1 chr1 979382 979382 1 + C T rs534519250 979382 + 979362 979402 41 AGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCGAGCAG AGACACAGATCGAGGAGGCCTGGGCAGGGCCGTGCGAGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979382 chr1:979382 nonsynonymous SNV 0.761 0 21 hm5C_associated_SNPs_1 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1 DeepMRMD:1;iRNA_m5C:1 2 chr1 1469874 1469874 1 + C G rs138599210 1469874 + 1469854 1469894 41 GCGCCTGCCAGGGCCAGACCCAGGTGGGGCAGCCTGAACCC GCGCCTGCCAGGGCCAGACCGAGGTGGGGCAGCCTGAACCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATAD3A ENSG00000197785 UTR3 Human protein_coding chr1:1469874 chr1:1469874 . . 0 21 hm5C_associated_SNPs_2 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_2 DeepMRMD:1;iRNA_m5C:1 3 chr1 2240448 2240448 1 + C T rs577306431 2240448 + 2240428 2240468 41 CTGCAGCTGCCAGGCCCGTGCGGTCAGTGGGACCCGGACGT CTGCAGCTGCCAGGCCCGTGTGGTCAGTGGGACCCGGACGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SKI ENSG00000157933 UTR3 Human protein_coding chr1:2240448 chr1:2240448 . . 0 21 hm5C_associated_SNPs_3 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_3 DeepMRMD:1;iRNA_m5C:1 4 chr1 6160034 6160034 1 + C T rs113497487 6160034 + 6160014 6160054 41 CCCAGGCTTTGCAGACCACGCGGGGCAGGGCTCCACTGAAG CCCAGGCTTTGCAGACCACGTGGGGCAGGGCTCCACTGAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCNAB2 ENSG00000069424 CDS Human protein_coding chr1:6160034 chr1:6160034 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_4 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_4 DeepMRMD:1;iRNA_m5C:1 5 chr1 7797503 7797503 1 + C G rs41278952 7797503 + 7797483 7797523 41 CAGGCTCAGCTGGGACAGAACCCCAGAATCCACTGTCCTGC CAGGCTCAGCTGGGACAGAAGCCCAGAATCCACTGTCCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7797503 chr1:7797503 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_5 1 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_5 DeepMRMD:1;iRNA_m5C:1 not specified not specified 6 chr1 12009955 12009955 1 + C T rs7529452 12009955 + 12009935 12009975 41 GAGGATCTGGTCATTCTCTTCGCAGACAGGTAGGTGGGTCA GAGGATCTGGTCATTCTCTTTGCAGACAGGTAGGTGGGTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12009955 chr1:12009955 synonymous SNV . 0 21 hm5C_associated_SNPs_6 2 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_6 DeepMRMD:1;iRNA_m5C:1 not specified not specified 7 chr1 17053782 17053782 1 + C A rs2419168 17053782 + 17053762 17053802 41 GGCCGTGGGTGTGTAGAGGCCTTGGTGGTGCAGTGGTAGAA GGCCGTGGGTGTGTAGAGGCATTGGTGGTGCAGTGGTAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053782 chr1:17053782 . . 0 21 hm5C_associated_SNPs_7 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_7 DeepMRMD:1;iRNA_m5C:1 8 chr1 17053816 17053816 1 + C A rs2419165 17053816 + 17053796 17053836 41 GGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTCAAT GGTAGAATTCTCGCCTCCCAAGTGGGAGACCCGGGTTCAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053816 chr1:17053816 . . 0 21 hm5C_associated_SNPs_8 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_8 DeepMRMD:1;iRNA_m5C:1 9 chr1 17186742 17186742 1 + C G rs139568199 17186742 + 17186722 17186762 41 GCTTCACATATGAAAGGTCTCTGGTTCGAGACTGCGTGGGA GCTTCACATATGAAAGGTCTGTGGTTCGAGACTGCGTGGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3675;LOC440570 ENSG00000230239 downstream Human lincRNA chr1:17186742 chr1:17186742 . . 0 21 hm5C_associated_SNPs_9 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_9 DeepMRMD:1;iRNA_m5C:1 10 chr1 17188446 17188446 1 + C A rs552484036 17188446 + 17188426 17188466 41 TTCAGTGGTAGAATTCTCGCCTCCCACGCGGGAGACCCGGG TTCAGTGGTAGAATTCTCGCATCCCACGCGGGAGACCCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188446 chr1:17188446 . . 0 21 hm5C_associated_SNPs_10 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_10 DeepMRMD:1;iRNA_m5C:1 11 chr1 17188454 17188454 1 + C A rs530559305 17188454 + 17188434 17188474 41 TAGAATTCTCGCCTCCCACGCGGGAGACCCGGGTTCAATTC TAGAATTCTCGCCTCCCACGAGGGAGACCCGGGTTCAATTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188454 chr1:17188454 . . 0 21 hm5C_associated_SNPs_11 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_11 DeepMRMD:1;iRNA_m5C:1 12 chr1 22331999 22331999 1 + C A rs60166197 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACGTGTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22331999 synonymous SNV . 0 21 hm5C_associated_SNPs_12 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_12 DeepMRMD:1;iRNA_m5C:1 13 chr1 22333431 22333431 1 + C T rs149331601 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333431 synonymous SNV . 0 21 hm5C_associated_SNPs_13 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_13 DeepMRMD:1;iRNA_m5C:1 14 chr1 22333954 22333954 1 + C T rs74062237 22333954 + 22333934 22333974 41 AGGTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGGT AGGTGGAACTGGTGGGGTTCTACCGTGAAGAAAACCATGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333954 chr1:22333954 synonymous SNV . 0 21 hm5C_associated_SNPs_14 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_14 DeepMRMD:1;iRNA_m5C:1 15 chr1 22336277 22336277 1 + C G rs3820285 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGACCAGCTTTGTTTCTGGCTTTGGCTGCAACTTCATCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336277 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_15 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_15 DeepMRMD:1;iRNA_m5C:1 16 chr1 22336305 22336305 1 + C T rs9187 22336305 + 22336285 22336325 41 TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTC TGCAACTTCATCTGGAAGCCTACGGTGTTCACTCGAGTCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336305 chr1:22336305 synonymous SNV . 0 21 hm5C_associated_SNPs_16 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_16 DeepMRMD:1;iRNA_m5C:1 17 chr1 24121411 24121411 1 + C G rs565797797 24121411 + 24121391 24121431 41 CTGGCCTTAGCCACCTGGCTCTGTCTGCAGCAGGGGCAGGC CTGGCCTTAGCCACCTGGCTGTGTCTGCAGCAGGGGCAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LYPLA2 ENSG00000011009 UTR3 Human protein_coding chr1:24121411 chr1:24121411 . . 0 21 hm5C_associated_SNPs_17 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_17 DeepMRMD:1;iRNA_m5C:1 18 chr1 26135615 26135615 1 + C T rs34177164 26135615 + 26135595 26135635 41 GCCTGCCTGACTGCCATCAGCGACTTCTACTACACTGTGAT GCCTGCCTGACTGCCATCAGTGACTTCTACTACACTGTGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26135615 chr1:26135615 synonymous SNV . 0 21 hm5C_associated_SNPs_18 1 0 1 0 2 unknown 1 0 1 1 hm5C_site_18 DeepMRMD:1;iRNA_m5C:1 not specified not specified 19 chr1 28975140 28975140 1 + C G rs112431178 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC CTTCTGTCGTGAGTGGCACAGGTAGGGCAACTCGATTGCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975140 . . 0 21 hm5C_associated_SNPs_19 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_19 DeepMRMD:1;iRNA_m5C:1 20 chr1 28975234 28975234 1 + C A rs181924966 28975234 + 28975214 28975254 41 GGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG GGCAGCTGGTGATCGTTGGTACCGGCGCCCTTTCTTTACTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975234 chr1:28975234 . . 0 21 hm5C_associated_SNPs_20 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_20 DeepMRMD:1;iRNA_m5C:1 21 chr1 28975243 28975243 1 + C A rs188285085 28975243 + 28975223 28975263 41 TGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATGTT TGATCGTTGGTCCCGGCGCCATTTCTTTACTGTTATATGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975243 chr1:28975243 . . 0 21 hm5C_associated_SNPs_21 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_21 DeepMRMD:1;iRNA_m5C:1 22 chr1 38174379 38174379 1 + C T rs41303419 38174379 + 38174359 38174399 41 CCTGCCTGCAGTTGAGGGGGCGAAGAAGAACCCTGTGTTCT CCTGCCTGCAGTTGAGGGGGTGAAGAAGAACCCTGTGTTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDCA8 ENSG00000134690 UTR3 Human protein_coding chr1:38174379 chr1:38174379 . . 0 21 hm5C_associated_SNPs_22 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_22 DeepMRMD:1;iRNA_m5C:1 23 chr1 39799556 39799556 1 + C T rs75090311 39799556 + 39799536 39799576 41 TCAACTCTTGGCTTGGTGGACGTTGCTGACCAGCCAGAACT TCAACTCTTGGCTTGGTGGATGTTGCTGACCAGCCAGAACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39799556 chr1:39799556 synonymous SNV . 0 21 hm5C_associated_SNPs_23 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_23 DeepMRMD:1;iRNA_m5C:1 24 chr1 43296173 43296173 1 + C T rs33950227 43296173 + 43296153 43296193 41 TCTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT TCTGGCTGCCTCATCCCTCTTGTCTTCCTCCGGCTGTCTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ERMAP ENSG00000164010 CDS Human protein_coding chr1:43296173 chr1:43296173 synonymous SNV . 0 21 hm5C_associated_SNPs_24 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_24 DeepMRMD:1;iRNA_m5C:1 25 chr1 45116470 45116470 1 + C T rs186111768 45116470 + 45116450 45116490 41 TATCTGCCCCAGGCAGGCCTCGCCTCCAGCAGCCCCACCTG TATCTGCCCCAGGCAGGCCTTGCCTCCAGCAGCCCCACCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45116470 chr1:45116470 . . 0 21 hm5C_associated_SNPs_25 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_25 DeepMRMD:1;iRNA_m5C:1 26 chr1 45242241 45242241 1 + C A rs377221663 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGAATTGTCATAGTTACACTGACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242241 . . 0 21 hm5C_associated_SNPs_26 0 0 1 6 0 unknown 1 0 1 1 hm5C_site_26 DeepMRMD:1;iRNA_m5C:1 27 chr1 55529491 55529491 1 + C T rs182138201 55529491 + 55529471 55529511 41 TGCCAGGAAGCTCCCTCCCTCACTGTGGGGCATTTCACCAT TGCCAGGAAGCTCCCTCCCTTACTGTGGGGCATTTCACCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCSK9 ENSG00000169174 UTR3 Human protein_coding chr1:55529491 chr1:55529491 . . 0 21 hm5C_associated_SNPs_27 2 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_27 DeepMRMD:1;iRNA_m5C:1 Familial hypobetalipoproteinemia Familial hypobetalipoproteinemia 28 chr1 57178968 57178968 1 + C G rs556106154 57178968 + 57178948 57178988 41 GCTGGGTCTAGAAGAGTTATCAGACTGTAGGCCTGTATTAA GCTGGGTCTAGAAGAGTTATGAGACTGTAGGCCTGTATTAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAA2 ENSG00000162409 UTR3 Human protein_coding chr1:57178968 chr1:57178968 . . 0 21 hm5C_associated_SNPs_28 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_28 DeepMRMD:1;iRNA_m5C:1 29 chr1 62627241 62627241 1 + C T rs12059368 62627241 + 62627221 62627261 41 GGCTGGTCTTGAACTTCTGACCTCAGGTGATCTGCCTGCCT GGCTGGTCTTGAACTTCTGATCTCAGGTGATCTGCCTGCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627241 chr1:62627241 . . 0 21 hm5C_associated_SNPs_29 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_29 DeepMRMD:1;iRNA_m5C:1 30 chr1 62628416 62628416 1 + C T rs540058706 62628416 + 62628396 62628436 41 GAATCATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATAT GAATCATGAGGTCAGGAGTTTGAGACCAGCCTGGCCAATAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628416 chr1:62628416 . . 0 21 hm5C_associated_SNPs_30 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_30 DeepMRMD:1;iRNA_m5C:1 31 chr1 62902820 62902820 1 + C A rs375113601 62902820 + 62902800 62902840 41 TGTTGCGCTCCTGGCTCTCCCGGGGCGGGCGCAGATGGGCG TGTTGCGCTCCTGGCTCTCCAGGGGCGGGCGCAGATGGGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control USP1 ENSG00000162607 UTR5 Human protein_coding chr1:62902820 chr1:62902820 . . 0 21 hm5C_associated_SNPs_31 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_31 DeepMRMD:1;iRNA_m5C:1 32 chr1 86048579 86048579 1 + C A rs9658587 86048579 + 86048559 86048599 41 TGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGG TGACCAGGACTGTGAAGATGAGGTTCCGCTGCGAAGATGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048579 chr1:86048579 synonymous SNV 1.000 0 21 hm5C_associated_SNPs_32 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_32 DeepMRMD:1;iRNA_m5C:1 33 chr1 93297617 93297617 1 + C G rs116168890 93297617 + 93297597 93297637 41 CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGGTCTCT CCTTTTCCCACCCCCTAGCGGCGCTGGGCCTGCAGGTCTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control RPL5 ENSG00000122406 UTR5 Human protein_coding chr1:93297617 chr1:93297617 . . 0 21 hm5C_associated_SNPs_33 1 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_33 DeepMRMD:1;iRNA_m5C:1 Diamond-Blackfan anemia Diamond-Blackfan anemia 34 chr1 94883995 94883995 1 + C A rs4148058 94883995 + 94883975 94884015 41 GTAGCCGCCGCCGCCGCCGCCGCCGCGTCCCCTCGCCGGCT GTAGCCGCCGCCGCCGCCGCAGCCGCGTCCCCTCGCCGGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCD3 ENSG00000117528 UTR5 Human protein_coding chr1:94883995 chr1:94883995 . . 0 21 hm5C_associated_SNPs_34 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_34 DeepMRMD:1;iRNA_m5C:1 35 chr1 107599880 107599880 1 + C A rs377462998 107599880 + 107599860 107599900 41 ACCAAGTGGCTGAAGGAGGGCGGTCTTCTCCTGCCGGCCTC ACCAAGTGGCTGAAGGAGGGAGGTCTTCTCCTGCCGGCCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRMT6 ENSG00000198890 CDS Human protein_coding chr1:107599880 chr1:107599880 synonymous SNV . 0 21 hm5C_associated_SNPs_35 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_35 DeepMRMD:1;iRNA_m5C:1 36 chr1 109806834 109806834 1 + C A rs6698843 109806834 + 109806814 109806854 41 CTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCCTT CTGGGAGCCAGCGGGGGGCCAGGCCATGCCATTCTGTCCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806834 chr1:109806834 synonymous SNV . 0 21 hm5C_associated_SNPs_36 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_36 DeepMRMD:1;iRNA_m5C:1 37 chr1 109811554 109811554 1 + C T rs368143806 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCTCGCTACGAGGCCCTGCGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811554 synonymous SNV . 0 21 hm5C_associated_SNPs_37 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_37 DeepMRMD:1;iRNA_m5C:1 38 chr1 111991768 111991768 1 + G A rs11548427 111991768 - 111991748 111991788 41 CGGAAGGAAACCCCACCCCCCCTAGTGCCCCCGGCGGCCCG CGGAAGGAAACCCCACCCCCTCTAGTGCCCCCGGCGGCCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR77 ENSG00000116455 CDS Human protein_coding chr1:111991768 chr1:111991768 synonymous SNV . 0 21 hm5C_associated_SNPs_38 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_38 DeepMRMD:1;iRNA_m5C:1 39 chr1 146731563 146731563 1 + C T rs200538213 146731563 + 146731543 146731583 41 AGCTCCCTGCTGCATAAGACCTTGTCAGAGGTAAACTTACA AGCTCCCTGCTGCATAAGACTTTGTCAGAGGTAAACTTACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD1L ENSG00000131778 CDS Human protein_coding chr1:146731563 chr1:146731563 synonymous SNV . 0 21 hm5C_associated_SNPs_39 0 0 1 2 2 Ribosome 1 0 1 1 hm5C_site_39 DeepMRMD:1;iRNA_m5C:1 40 chr1 148248187 148248187 1 + C A rs587657101 148248187 + 148248167 148248207 41 GGTTCGAGCCCACCCAGGGACGCCTCTTTGAGCTTTTAAAG GGTTCGAGCCCACCCAGGGAAGCCTCTTTGAGCTTTTAAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBPF19;NBPF26 ENSG00000236140 upstream Human lincRNA chr1:148248187 chr1:148248187 . . 0 21 hm5C_associated_SNPs_40 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_40 DeepMRMD:1;iRNA_m5C:1 41 chr1 151020378 151020378 1 + C T rs74856367 151020378 + 151020358 151020398 41 TGCTGCTGAATCTGGGTCCCCGGGCGGCGGGGGCCCAAGGC TGCTGCTGAATCTGGGTCCCTGGGCGGCGGGGGCCCAAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020378 chr1:151020378 nonsynonymous SNV 0.667 1 21 hm5C_associated_SNPs_41 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_41 DeepMRMD:1;iRNA_m5C:1 42 chr1 154975369 154975369 1 + C T rs538492632 154975369 + 154975349 154975389 41 TGGTGGGGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCA TGGTGGGGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975369 chr1:154975369 . . 0 21 hm5C_associated_SNPs_42 0 0 0 0 2 chromatin 1 0 1 1 hm5C_site_42 DeepMRMD:1;iRNA_m5C:1 43 chr1 160183407 160183407 1 + C T rs1049198 160183407 + 160183387 160183427 41 GTCCTAACCCCCTTACTGTGCGCGTGTGTGTGCGTGTGCGC GTCCTAACCCCCTTACTGTGTGCGTGTGTGTGCGTGTGCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PEA15 ENSG00000162734 UTR3 Human protein_coding chr1:160183407 chr1:160183407 . . 0 21 hm5C_associated_SNPs_43 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_43 DeepMRMD:1;iRNA_m5C:1 44 chr1 161130542 161130542 1 + C T rs544093165 161130542 + 161130522 161130562 41 CCAGGGCCCGCAGCAAGGAGCGCAGAAACCCAGCCTCTGGG CCAGGGCCCGCAGCAAGGAGTGCAGAAACCCAGCCTCTGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161130542 chr1:161130542 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_44 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_44 DeepMRMD:1;iRNA_m5C:1 45 chr1 161500937 161500937 1 + C T rs184807445 161500937 + 161500917 161500957 41 GTGGTGAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTC GTGGTGAGCATAGCTGCCTTTCAAGCAGTTGACCCGGGTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500937 chr1:161500937 . . 0 21 hm5C_associated_SNPs_45 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_45 DeepMRMD:1;iRNA_m5C:1 46 chr1 161500971 161500971 1 + C A rs189592997 161500971 + 161500951 161500991 41 CGGGTTCGATTCCCGGCCAACGCAAGGGTTTTTGTCTTTCC CGGGTTCGATTCCCGGCCAAAGCAAGGGTTTTTGTCTTTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500971 chr1:161500971 . . 0 21 hm5C_associated_SNPs_46 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_46 DeepMRMD:1;iRNA_m5C:1 47 chr1 161748056 161748056 1 + C A rs2070151 161748056 + 161748036 161748076 41 TCTGCTCTCTTTGCTGAACTCGGTTATTTCACAGACACTGA TCTGCTCTCTTTGCTGAACTAGGTTATTTCACAGACACTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161748056 chr1:161748056 synonymous SNV . 0 21 hm5C_associated_SNPs_47 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_47 DeepMRMD:1;iRNA_m5C:1 48 chr1 180064828 180064828 1 + C T rs149481021 180064828 + 180064808 180064848 41 AAAAATAAGGCAGAAGAAACCATTGTACCTCTAATGGCAGA AAAAATAAGGCAGAAGAAACTATTGTACCTCTAATGGCAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP350 ENSG00000135837 CDS Human protein_coding chr1:180064828 chr1:180064828 synonymous SNV . 0 21 hm5C_associated_SNPs_48 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_48 DeepMRMD:1;iRNA_m5C:1 49 chr1 200811203 200811203 1 + C T rs188044529 200811203 + 200811183 200811223 41 TTGTACAGCCTCGTGTTGTTCGTCCACAAGGAGGTAATCAA TTGTACAGCCTCGTGTTGTTTGTCCACAAGGAGGTAATCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200811203 chr1:200811203 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_49 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_49 DeepMRMD:1;iRNA_m5C:1 50 chr1 201185660 201185660 1 + C A rs563943429 201185660 + 201185640 201185680 41 CTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGGA CTGCCTCCGCTGGCGGCCCCAAAGGGACAATGGGGGCCGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185660 chr1:201185660 nonsynonymous SNV 0.309 5 21 hm5C_associated_SNPs_50 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_50 DeepMRMD:1;iRNA_m5C:1 51 chr1 201966541 201966541 1 + C T rs79980228 201966541 + 201966521 201966561 41 CCTGCCTGCTAGCTGGGGACCGCTCCTTGGCAGATGTCATC CCTGCCTGCTAGCTGGGGACTGCTCCTTGGCAGATGTCATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966541 chr1:201966541 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_51 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_51 DeepMRMD:1;iRNA_m5C:1 52 chr1 204524361 204524361 1 + C G rs533621807 204524361 + 204524341 204524381 41 GGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTC GGCGCGATCTCGGCTCACTGGAACCTCCGCCTCCCGGGTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524361 chr1:204524361 . . 0 21 hm5C_associated_SNPs_52 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_52 DeepMRMD:1;iRNA_m5C:1 53 chr1 206906889 206906889 1 + C G rs562213709 206906889 + 206906869 206906909 41 GGGAGGCAGAGAGGAGTGACCGGGCACTGGCACTGCGATCA GGGAGGCAGAGAGGAGTGACGGGGCACTGGCACTGCGATCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAPKAPK2 ENSG00000162889 UTR3 Human protein_coding chr1:206906889 chr1:206906889 . . 0 21 hm5C_associated_SNPs_53 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_53 DeepMRMD:1;iRNA_m5C:1 54 chr1 212619354 212619354 1 + C A rs561236925 212619354 + 212619334 212619374 41 AAGGATGAGTTCTGATGTTCCCCCTGCAGGAGCAGGTTCTT AAGGATGAGTTCTGATGTTCACCCTGCAGGAGCAGGTTCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NENF ENSG00000117691 UTR3 Human protein_coding chr1:212619354 chr1:212619354 . . 0 21 hm5C_associated_SNPs_54 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_54 DeepMRMD:1;iRNA_m5C:1 55 chr1 215740806 215740806 1 + C T rs540761081 215740806 + 215740786 215740826 41 AGGCCGCGAAAGGTGGAGGCCGGGCCGCCCTTGTGCACCGC AGGCCGCGAAAGGTGGAGGCTGGGCCGCCCTTGTGCACCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KCTD3 ENSG00000136636 UTR5 Human protein_coding chr1:215740806 chr1:215740806 . . 0 21 hm5C_associated_SNPs_55 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_55 DeepMRMD:1;iRNA_m5C:1 56 chr1 222638418 222638418 1 + C T rs189143488 222638418 + 222638398 222638438 41 AGTTCGATCCTCGCTGGGGCCTCCTGTTGGCTTACTTTTAT AGTTCGATCCTCGCTGGGGCTTCCTGTTGGCTTACTTTTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01655;HHIPL2 ENSG00000226643;ENSG00000234419 intergenic Human other chr1:222638418 chr1:222638418 . . 0 21 hm5C_associated_SNPs_56 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_56 DeepMRMD:1;iRNA_m5C:1 57 chr1 228526011 228526011 1 + C T rs11577699 228526011 + 228525991 228526031 41 CTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCC CTGTCACCTGAGTGGGGGGCTGCTGAGGCCCCTGAGTTCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526011 chr1:228526011 synonymous SNV . 0 21 hm5C_associated_SNPs_57 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_57 DeepMRMD:1;iRNA_m5C:1 58 chr1 228566484 228566484 1 + C T rs372336310 228566484 + 228566464 228566504 41 TACAAGAGGCACAACCTGGCCCAGGTGCGCTGAGGGTCGCC TACAAGAGGCACAACCTGGCTCAGGTGCGCTGAGGGTCGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228566484 chr1:228566484 synonymous SNV . 0 21 hm5C_associated_SNPs_58 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_58 DeepMRMD:1;iRNA_m5C:1 59 chr1 249168105 249168105 1 + C A rs191209788 249168105 + 249168085 249168125 41 ACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCTGGTCTCCG ACTCAAGGTAAGCACCTTGCATGCGGGCTTTCTGGTCTCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168105 chr1:249168105 . . 0 21 hm5C_associated_SNPs_59 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_59 DeepMRMD:1;iRNA_m5C:1 60 chr1 249168490 249168490 1 + C G rs552356830 249168490 + 249168470 249168510 41 ATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGG ATTCGGCGCTCTCACCGCCGGGGCCCGGGTTCGATTCCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168490 chr1:249168490 . . 0 21 hm5C_associated_SNPs_60 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_60 DeepMRMD:1;iRNA_m5C:1 61 chr2 20646860 20646860 1 + C G rs376654937 20646860 + 20646840 20646880 41 CCACCGCAGTCTGGTTGGAGCTGTTGTCTTGTATGCTCAGC CCACCGCAGTCTGGTTGGAGGTGTTGTCTTGTATGCTCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOB ENSG00000143878 UTR5 Human protein_coding chr2:20646860 chr2:20646860 . . 0 21 hm5C_associated_SNPs_61 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_61 DeepMRMD:1;iRNA_m5C:1 62 chr2 27157542 27157542 1 + C T rs151073506 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCGGCTGCCTATGTCATGGTGCCTCCCCTGAGACTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157542 nonsynonymous SNV 0.975 3 21 hm5C_associated_SNPs_62 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_62 DeepMRMD:1;iRNA_m5C:1 63 chr2 27273696 27273696 1 + C G rs186601168 27273696 + 27273676 27273716 41 GAGGACTGTAGTGGATAGGGCGTGGCAATCCTTAGGTCGCT GAGGACTGTAGTGGATAGGGGGTGGCAATCCTTAGGTCGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5;AGBL5-AS1 ENSG00000084693 intronic Human protein_coding chr2:27273696 chr2:27273696 . . 0 21 hm5C_associated_SNPs_63 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_63 DeepMRMD:1;iRNA_m5C:1 64 chr2 27274551 27274551 1 + C T rs562717893 27274551 + 27274531 27274571 41 CTGGCAGAGCGGGGTCCCGGCACCGCGGCGCTCGGGTGTTT CTGGCAGAGCGGGGTCCCGGTACCGCGGCGCTCGGGTGTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGBL5 ENSG00000084693 UTR5 Human protein_coding chr2:27274551 chr2:27274551 . . 0 21 hm5C_associated_SNPs_64 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_64 DeepMRMD:1;iRNA_m5C:1 65 chr2 32446353 32446353 1 + C T rs142581037 32446353 + 32446333 32446373 41 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC ATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SLC30A6 ENSG00000152683 UTR3 Human protein_coding chr2:32446353 chr2:32446353 . . 0 21 hm5C_associated_SNPs_65 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_65 DeepMRMD:1;iRNA_m5C:1 66 chr2 54858664 54858664 1 + C T rs2229503 54858664 + 54858644 54858684 41 CTCCACAAGATGTGGGAGAACAGACAAAATCTCCTATCCCA CTCCACAAGATGTGGGAGAATAGACAAAATCTCCTATCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858664 chr2:54858664 synonymous SNV . 0 21 hm5C_associated_SNPs_66 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_66 DeepMRMD:1;iRNA_m5C:1 67 chr2 64068312 64068312 1 + C T rs181097784 64068312 + 64068292 64068332 41 ACTTTCAGCCTGCGAGCCTTCTTCCCGGGGCGCCATAAACG ACTTTCAGCCTGCGAGCCTTTTTCCCGGGGCGCCATAAACG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UGP2 ENSG00000169764 UTR5 Human protein_coding chr2:64068312 chr2:64068312 . . 0 21 hm5C_associated_SNPs_67 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_67 DeepMRMD:1;iRNA_m5C:1 68 chr2 74328796 74328796 1 + C G rs115005250 74328796 + 74328776 74328816 41 GCGGTGAAGGAGGAGAAGGGCGGTGGTGGTGCGGAGGAGGA GCGGTGAAGGAGGAGAAGGGGGGTGGTGGTGCGGAGGAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74328796 chr2:74328796 synonymous SNV . 0 21 hm5C_associated_SNPs_68 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_68 DeepMRMD:1;iRNA_m5C:1 69 chr2 95848136 95848136 1 + C T rs150085215 95848136 + 95848116 95848156 41 TTGTCTGAGAACCTAGGCCCCAGGTATCACTGCACTTTAAG TTGTCTGAGAACCTAGGCCCTAGGTATCACTGCACTTTAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF2 ENSG00000163067 UTR3 Human other chr2:95848136 chr2:95848136 . . 0 21 hm5C_associated_SNPs_69 0 0 0 7 0 chromatin 1 0 1 1 hm5C_site_69 DeepMRMD:1;iRNA_m5C:1 70 chr2 99772851 99772851 1 + C G rs187804121 99772851 + 99772831 99772871 41 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGC ATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTACAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772851 chr2:99772851 . . 0 21 hm5C_associated_SNPs_70 0 0 0 0 2 chromatin 1 0 1 1 hm5C_site_70 DeepMRMD:1;iRNA_m5C:1 71 chr2 113286657 113286657 1 + C T rs73955229 113286657 + 113286637 113286677 41 CCTTCCCCTCTCCCCGGGAACGGCAGGGCACTGGGACCTCT CCTTCCCCTCTCCCCGGGAATGGCAGGGCACTGGGACCTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTL ENSG00000114999 UTR3 Human protein_coding chr2:113286657 chr2:113286657 . . 0 21 hm5C_associated_SNPs_71 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_71 DeepMRMD:1;iRNA_m5C:1 72 chr2 120125406 120125406 1 + C T rs8192502 120125406 + 120125386 120125426 41 CTGGCCCGGTGGTGGCCAGGCAGTTGGCCGCGCTGCTTCTC CTGGCCCGGTGGTGGCCAGGTAGTTGGCCGCGCTGCTTCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DBI ENSG00000155368 UTR5 Human protein_coding chr2:120125406 chr2:120125406 . . 0 21 hm5C_associated_SNPs_72 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_72 DeepMRMD:1;iRNA_m5C:1 73 chr2 122288513 122288513 1 + C G rs115435830 122288513 + 122288493 122288533 41 AGCGCATAGTGAGGGCAGTACTGCTAACGCCTGAACAACAC AGCGCATAGTGAGGGCAGTAGTGCTAACGCCTGAACAACAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288513 chr2:122288513 . . 0 21 hm5C_associated_SNPs_73 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_73 DeepMRMD:1;iRNA_m5C:1 74 chr2 131906250 131906250 1 + C G rs16856546 131906250 + 131906230 131906270 41 CCACGGGTCTGCTTTTCTCTCTGATCCTAGGGGACTTGTTG CCACGGGTCTGCTTTTCTCTGTGATCCTAGGGGACTTGTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906250 chr2:131906250 . . 0 21 hm5C_associated_SNPs_74 0 0 1 1 0 Ribosome 1 0 1 1 hm5C_site_74 DeepMRMD:1;iRNA_m5C:1 75 chr2 189156630 189156630 1 + C G rs10168305 189156630 + 189156610 189156650 41 CGGGAGCGACCCGGAGTCCCCAGCCCCGCGTCCCAGCTGCC CGGGAGCGACCCGGAGTCCCGAGCCCCGCGTCCCAGCTGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GULP1 ENSG00000144366 UTR5 Human protein_coding chr2:189156630 chr2:189156630 . . 0 21 hm5C_associated_SNPs_75 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_75 DeepMRMD:1;iRNA_m5C:1 76 chr2 204103736 204103736 1 + C G rs375917906 204103736 + 204103716 204103756 41 AATTGGGCCAGGCTGAGGCGCTGCTGCTGGAGCGGCCGATC AATTGGGCCAGGCTGAGGCGGTGCTGCTGGAGCGGCCGATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CYP20A1 ENSG00000119004 UTR5 Human protein_coding chr2:204103736 chr2:204103736 . . 0 21 hm5C_associated_SNPs_76 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_76 DeepMRMD:1;iRNA_m5C:1 77 chr2 207026649 207026649 1 + C A rs370161702 207026649 + 207026629 207026669 41 CACCATCTTTCGGCTGAGTTCGTGATGGATTTGCTTTTTTC CACCATCTTTCGGCTGAGTTAGTGATGGATTTGCTTTTTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD51 ENSG00000207047 ncRNA_exonic Human snoRNA chr2:207026649 chr2:207026649 . . 0 21 hm5C_associated_SNPs_77 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_77 DeepMRMD:1;iRNA_m5C:1 78 chr2 216190020 216190020 1 + C G rs2372536 216190020 + 216190000 216190040 41 AGTGGCTTCTCCAGGTGTAACTGTTGAGGAGGCTGTGGAGC AGTGGCTTCTCCAGGTGTAAGTGTTGAGGAGGCTGTGGAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216190020 chr2:216190020 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_78 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_78 DeepMRMD:1;iRNA_m5C:1 79 chr2 216960884 216960884 1 + C G rs148746587 216960884 + 216960864 216960904 41 GAGAAAACAGATGAGGAGCCCGGAGAATCAGAAGGTGGAGA GAGAAAACAGATGAGGAGCCGGGAGAATCAGAAGGTGGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM169 ENSG00000163449 CDS Human protein_coding chr2:216960884 chr2:216960884 synonymous SNV . 0 21 hm5C_associated_SNPs_79 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_79 DeepMRMD:1;iRNA_m5C:1 80 chr2 234197569 234197569 1 + C A rs547884745 234197569 + 234197549 234197589 41 TATCTGTGGCTATGATCTGCCTTGTTCAAGCTGAGACCTCT TATCTGTGGCTATGATCTGCATTGTTCAAGCTGAGACCTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA6 ENSG00000251791 ncRNA_exonic Human scaRNA chr2:234197569 chr2:234197569 . . 0 21 hm5C_associated_SNPs_80 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_80 DeepMRMD:1;iRNA_m5C:1 81 chr2 238688317 238688317 1 + C T rs142787144 238688317 + 238688297 238688337 41 GCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCCCAGG GCTTGGCGCTTAGGGGCTCCTGTGCCATGGCTCACCCCAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688317 chr2:238688317 . . 0 21 hm5C_associated_SNPs_81 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_81 DeepMRMD:1;iRNA_m5C:1 82 chr2 239041060 239041060 1 + C T rs556660436 239041060 + 239041040 239041080 41 CCTGGCCTAGTCGTGGGCCCCAGCAAGGCTGGAGAGCAGGG CCTGGCCTAGTCGTGGGCCCTAGCAAGGCTGGAGAGCAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ESPNL ENSG00000144488 UTR3 Human protein_coding chr2:239041060 chr2:239041060 . . 0 21 hm5C_associated_SNPs_82 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_82 DeepMRMD:1;iRNA_m5C:1 83 chr2 239359705 239359705 1 + C T rs113223463 239359705 + 239359685 239359725 41 ACCTCTCAGTGTGGAATGAACGCTCCAAACCCGAACCTCTC ACCTCTCAGTGTGGAATGAATGCTCCAAACCCGAACCTCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASB1 ENSG00000065802 UTR3 Human protein_coding chr2:239359705 chr2:239359705 . . 0 21 hm5C_associated_SNPs_83 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_83 DeepMRMD:1;iRNA_m5C:1 84 chr2 241406446 241406446 1 + C T rs116169272 241406446 + 241406426 241406466 41 GGAAGCTGGGCCCAAAGGCCCAGGGAGGCAGCGTGGGCTCT GGAAGCTGGGCCCAAAGGCCTAGGGAGGCAGCGTGGGCTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPC1 ENSG00000063660 UTR3 Human protein_coding chr2:241406446 chr2:241406446 . . 0 21 hm5C_associated_SNPs_84 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_84 DeepMRMD:1;iRNA_m5C:1 85 chr2 241406965 241406965 1 + C T rs3792212 241406965 + 241406945 241406985 41 CCTGTGCCCCAGCTGCCAGGCGGCCCTGGGGAGGGGTGGTG CCTGTGCCCCAGCTGCCAGGTGGCCCTGGGGAGGGGTGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPC1 ENSG00000063660 UTR3 Human protein_coding chr2:241406965 chr2:241406965 . . 0 21 hm5C_associated_SNPs_85 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_85 DeepMRMD:1;iRNA_m5C:1 86 chr3 5229643 5229643 1 + C T rs144177905 5229643 + 5229623 5229663 41 CGTCTGAGGAGCCCCGACGGCCCCGCGTCGCCCACCTCGGG CGTCTGAGGAGCCCCGACGGTCCCGCGTCGCCCACCTCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDEM1 ENSG00000134109;ENSG00000268509 CDS Human other chr3:5229643 chr3:5229643 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_86 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_86 DeepMRMD:1;iRNA_m5C:1 87 chr3 5229654 5229654 1 + C A rs556204754 5229654 + 5229634 5229674 41 CCCCGACGGCCCCGCGTCGCCCACCTCGGGGCCCGTGGGCC CCCCGACGGCCCCGCGTCGCACACCTCGGGGCCCGTGGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDEM1 ENSG00000134109;ENSG00000268509 CDS Human other chr3:5229654 chr3:5229654 nonsynonymous SNV 0.275 2 21 hm5C_associated_SNPs_87 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_87 DeepMRMD:1;iRNA_m5C:1 88 chr3 10143189 10143189 1 + C T rs552573592 10143189 + 10143169 10143209 41 AAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACGA AAGCGATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGACGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FANCD2 ENSG00000144554 UTR3 Human protein_coding chr3:10143189 chr3:10143189 . . 0 21 hm5C_associated_SNPs_88 0 0 1 1 0 Cytosol 1 0 1 1 hm5C_site_88 DeepMRMD:1;iRNA_m5C:1 89 chr3 10193789 10193789 1 + C T rs140614750 10193789 + 10193769 10193809 41 AGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTT AGGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10193789 chr3:10193789 . . 0 21 hm5C_associated_SNPs_89 1 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_89 DeepMRMD:1;iRNA_m5C:1 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 90 chr3 11303244 11303244 1 + C T rs115063631 11303244 + 11303224 11303264 41 CAAAAATGTGCCCTTTTGGCCGGGCATGGTAGCTCAAGCCT CAAAAATGTGCCCTTTTGGCTGGGCATGGTAGCTCAAGCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HRH1 ENSG00000196639 UTR3 Human protein_coding chr3:11303244 chr3:11303244 . . 0 21 hm5C_associated_SNPs_90 0 0 0 0 0 nucleus 1 0 1 1 hm5C_site_90 DeepMRMD:1;iRNA_m5C:1 91 chr3 12574481 12574481 1 + C T rs187627297 12574481 + 12574461 12574501 41 CTCTGGCGTCAGTCTTTTCCCTCATCCACTCACTGGGGAGA CTCTGGCGTCAGTCTTTTCCTTCATCCACTCACTGGGGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TSEN2 ENSG00000154743 UTR3 Human protein_coding chr3:12574481 chr3:12574481 . . 0 21 hm5C_associated_SNPs_91 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_91 DeepMRMD:1;iRNA_m5C:1 92 chr3 14487265 14487265 1 + C T rs2228585 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTTATTTTCCTGTTTGGGAGTGGCCTGCCTGTGTTTTTCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487265 synonymous SNV . 0 21 hm5C_associated_SNPs_92 0 0 1 1 2 Nucleus 1 0 1 1 hm5C_site_92 DeepMRMD:1;iRNA_m5C:1 93 chr3 40574890 40574890 1 + C G rs184243754 40574890 + 40574870 40574910 41 GATCCGCCTGCCTTGGCCCCCCAAAGTGCTGGGATTACAGG GATCCGCCTGCCTTGGCCCCGCAAAGTGCTGGGATTACAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40574890 chr3:40574890 . . 0 21 hm5C_associated_SNPs_93 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_93 DeepMRMD:1;iRNA_m5C:1 94 chr3 44903430 44903430 1 + C A rs559908499 44903430 + 44903410 44903450 41 AGGCAACATGGCCGAGAGGCCGGGGCCTCCGGGCGGCGCCG AGGCAACATGGCCGAGAGGCAGGGGCCTCCGGGCGGCGCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM42 ENSG00000169964 CDS Human protein_coding chr3:44903430 chr3:44903430 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_94 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_94 DeepMRMD:1;iRNA_m5C:1 95 chr3 45565503 45565503 1 + C T rs143838895 45565503 + 45565483 45565523 41 CCTTAGCAAGCCTCTCAGAGCGTCATTCTCCACAGCCCCGA CCTTAGCAAGCCTCTCAGAGTGTCATTCTCCACAGCCCCGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45565503 chr3:45565503 synonymous SNV . 0 21 hm5C_associated_SNPs_95 1 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_95 DeepMRMD:1;iRNA_m5C:1 not specified not specified 96 chr3 128631476 128631476 1 + C T rs373417322 128631476 + 128631456 128631496 41 GGGACAGTGTCCCCTGCTACCGCCCGCCCCTACCCATGGCC GGGACAGTGTCCCCTGCTACTGCCCGCCCCTACCCATGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACAD9 ENSG00000177646 UTR3 Human protein_coding chr3:128631476 chr3:128631476 . 0.000 0 21 hm5C_associated_SNPs_96 1 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_96 DeepMRMD:1;iRNA_m5C:1 Acyl-CoA dehydrogenase family, member 9, deficiency of Acyl-CoA dehydrogenase family, member 9, deficiency of 97 chr3 128998028 128998028 1 + C T rs563170047 128998028 + 128998008 128998048 41 CCGGGGAGCAGAGTCCGGAGCGGGATCCGCGGCCCACAGGT CCGGGGAGCAGAGTCCGGAGTGGGATCCGCGGCCCACAGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HMCES ENSG00000183624 UTR5 Human protein_coding chr3:128998028 chr3:128998028 . . 0 21 hm5C_associated_SNPs_97 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_97 DeepMRMD:1;iRNA_m5C:1 98 chr3 148562309 148562309 1 + C T rs147755306 148562309 + 148562289 148562329 41 ATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGT ATCCAAGTGACAGAGCTTCTTGACAAGTTAGACTTTTATGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562309 chr3:148562309 synonymous SNV . 0 21 hm5C_associated_SNPs_98 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_98 DeepMRMD:1;iRNA_m5C:1 99 chr3 169490055 169490055 1 + C G rs145973490 169490055 + 169490035 169490075 41 GTTATCACGTTCGCCTAACACGCGAAAGGTCCCCGGTTCGA GTTATCACGTTCGCCTAACAGGCGAAAGGTCCCCGGTTCGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490055 chr3:169490055 . . 0 21 hm5C_associated_SNPs_99 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_99 DeepMRMD:1;iRNA_m5C:1 100 chr3 169490083 169490083 1 + C A rs139959878 169490083 + 169490063 169490103 41 GTCCCCGGTTCGAAACCGGGCGGAAACACACTAAAAAATCC GTCCCCGGTTCGAAACCGGGAGGAAACACACTAAAAAATCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490083 chr3:169490083 . . 0 21 hm5C_associated_SNPs_100 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_100 DeepMRMD:1;iRNA_m5C:1 101 chr3 172470001 172470001 1 + C A rs549759531 172470001 + 172469981 172470021 41 ACGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAG ACGATCTCGGCTCACTGCAAACTCTGCCTCCCGGGTTCAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ECT2 ENSG00000114346 UTR5 Human protein_coding chr3:172470001 chr3:172470001 . . 0 21 hm5C_associated_SNPs_101 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_101 DeepMRMD:1;iRNA_m5C:1 102 chr3 179110165 179110165 1 + C G rs560382945 179110165 + 179110145 179110185 41 GATTCTGAAAAACTCTGCTTCCTGGCATCCAGGAGTTAGAG GATTCTGAAAAACTCTGCTTGCTGGCATCCAGGAGTTAGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFN1 ENSG00000171109 UTR3 Human protein_coding chr3:179110165 chr3:179110165 . . 0 21 hm5C_associated_SNPs_102 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_102 DeepMRMD:1;iRNA_m5C:1 103 chr3 183873345 183873345 1 + C G rs540238355 183873345 + 183873325 183873365 41 TGAGCCGCTGGGCCGCGCCGCGCGCCGCCGCCGTCTGGGAG TGAGCCGCTGGGCCGCGCCGGGCGCCGCCGCCGTCTGGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DVL3 ENSG00000161202 UTR5 Human protein_coding chr3:183873345 chr3:183873345 . . 0 21 hm5C_associated_SNPs_103 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_103 DeepMRMD:1;iRNA_m5C:1 104 chr3 188601290 188601290 1 + C A rs113366269 188601290 + 188601270 188601310 41 AGCACTTTGGGAGGCCGAGGCGAGCGGATCATGAGGTCAAG AGCACTTTGGGAGGCCGAGGAGAGCGGATCATGAGGTCAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601290 chr3:188601290 . . 0 21 hm5C_associated_SNPs_104 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_104 DeepMRMD:1;iRNA_m5C:1 105 chr3 188601294 188601294 1 + C T rs146135050 188601294 + 188601274 188601314 41 CTTTGGGAGGCCGAGGCGAGCGGATCATGAGGTCAAGAGAT CTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAAGAGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601294 chr3:188601294 . . 0 21 hm5C_associated_SNPs_105 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_105 DeepMRMD:1;iRNA_m5C:1 106 chr3 188601393 188601393 1 + C T rs553025745 188601393 + 188601373 188601413 41 TAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAACTACTT TAGCCGGGCGTGTTGGCGGGTGCCTGTAGTCCCAACTACTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601393 chr3:188601393 . . 0 21 hm5C_associated_SNPs_106 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_106 DeepMRMD:1;iRNA_m5C:1 107 chr3 193336676 193336676 1 + C T rs34307082 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGGAAGAAACGGTGTTTAGAGCAACAGATCGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336676 nonsynonymous SNV 0.973 1 21 hm5C_associated_SNPs_107 2 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_107 DeepMRMD:1;iRNA_m5C:1 not specified not specified 108 chr4 1809907 1809907 1 + C T rs185946582 1809907 + 1809887 1809927 41 GCATTTAGCTGGCCACATGGCGGAGAGTTTTAATTTTTAAC GCATTTAGCTGGCCACATGGTGGAGAGTTTTAATTTTTAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FGFR3 ENSG00000068078 UTR3 Human protein_coding chr4:1809907 chr4:1809907 . . 0 21 hm5C_associated_SNPs_108 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_108 DeepMRMD:1;iRNA_m5C:1 109 chr4 2066234 2066234 1 + C T rs547216464 2066234 + 2066214 2066254 41 TCCCGGGGCCAGGCTCCGGCCCCGCCTGCGGCCCCAGCGCC TCCCGGGGCCAGGCTCCGGCTCCGCCTGCGGCCCCAGCGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAT8L ENSG00000185818 UTR3 Human protein_coding chr4:2066234 chr4:2066234 . . 0 21 hm5C_associated_SNPs_109 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_109 DeepMRMD:1;iRNA_m5C:1 110 chr4 4861569 4861569 1 + C G rs560169358 4861569 + 4861549 4861589 41 GGCCGCGCTCCCAGCCCGCCCGGAGCCCATGCCCGGCGGCT GGCCGCGCTCCCAGCCCGCCGGGAGCCCATGCCCGGCGGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MSX1 ENSG00000163132 UTR5 Human protein_coding chr4:4861569 chr4:4861569 . . 0 21 hm5C_associated_SNPs_110 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_110 DeepMRMD:1;iRNA_m5C:1 111 chr4 6644273 6644273 1 + C G rs12695 6644273 + 6644253 6644293 41 CTTGAGGGGCTTGGGGATGACAGTATGGAACTGTCTGCATT CTTGAGGGGCTTGGGGATGAGAGTATGGAACTGTCTGCATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRFAP1 ENSG00000179010 UTR3 Human protein_coding chr4:6644273 chr4:6644273 . . 0 21 hm5C_associated_SNPs_111 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_111 DeepMRMD:1;iRNA_m5C:1 112 chr4 38945980 38945980 1 + C T rs1809657 38945980 + 38945960 38946000 41 GGATTACAGGCTTGAGCCACCGCGCCCGGCCGGTCATTCAT GGATTACAGGCTTGAGCCACTGCGCCCGGCCGGTCATTCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 UTR3 Human protein_coding chr4:38945980 chr4:38945980 . . 0 21 hm5C_associated_SNPs_112 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_112 DeepMRMD:1;iRNA_m5C:1 113 chr4 44680721 44680721 1 + C A rs371867418 44680721 + 44680701 44680741 41 GGGCCGCGCTTCTGGTGGCCCCGGGGCCCCGGTCCGCGCCG GGGCCGCGCTTCTGGTGGCCACGGGGCCCCGGTCCGCGCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680721 chr4:44680721 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_113 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_113 DeepMRMD:1;iRNA_m5C:1 114 chr4 75247458 75247458 1 + C A rs185909766 75247458 + 75247438 75247478 41 AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGGG AATCCCAGCACTTTGGGAGGACGAGGCGGGCGGATCACGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EREG ENSG00000124882 intronic Human protein_coding chr4:75247458 chr4:75247458 . . 0 21 hm5C_associated_SNPs_114 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_114 DeepMRMD:1;iRNA_m5C:1 115 chr4 79440589 79440589 1 + C A rs149604281 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCTCCTTGGAGCACCACACAGAGATGGAGTTTTCTTTCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440589 synonymous SNV . 0 21 hm5C_associated_SNPs_115 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_115 DeepMRMD:1;iRNA_m5C:1 116 chr4 114303470 114303470 1 + C T rs189421233 114303470 + 114303450 114303490 41 TGGCCAGCCATGGCTTAGGACTCCAACAGCCACTCTGAGGG TGGCCAGCCATGGCTTAGGATTCCAACAGCCACTCTGAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANK2 ENSG00000145362 UTR3 Human protein_coding chr4:114303470 chr4:114303470 . . 0 21 hm5C_associated_SNPs_116 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_116 DeepMRMD:1;iRNA_m5C:1 117 chr4 126238305 126238305 1 + C A rs191329848 126238305 + 126238285 126238325 41 TGCAAGACATTAATGACAACCCCCCGGTTTTTGGCAGTTCT TGCAAGACATTAATGACAACACCCCGGTTTTTGGCAGTTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126238305 chr4:126238305 nonsynonymous SNV 0.912 3 21 hm5C_associated_SNPs_117 1 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_117 DeepMRMD:1;iRNA_m5C:1 not specified not specified 118 chr4 126398352 126398352 1 + C G rs150804471 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTTACAGTTGGAGGTATGAGATCTCTAGAACCAATCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398352 nonsynonymous SNV 0.628 1 21 hm5C_associated_SNPs_118 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_118 DeepMRMD:1;iRNA_m5C:1 119 chr4 174243630 174243630 1 + C G rs73872561 174243630 + 174243610 174243650 41 TGGAAGTTGTGTAGCATTCACTCCCTTACCTACTGGCATTC TGGAAGTTGTGTAGCATTCAGTCCCTTACCTACTGGCATTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALNT7 ENSG00000248774 ncRNA_exonic Human antisense chr4:174243630 chr4:174243630 . . 0 21 hm5C_associated_SNPs_119 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_119 DeepMRMD:1;iRNA_m5C:1 120 chr4 177252884 177252884 1 + C T rs187746327 177252884 + 177252864 177252904 41 GGAGTAGCTGGGATTACAGGCGCCCGCCACCACGTCCGGCT GGAGTAGCTGGGATTACAGGTGCCCGCCACCACGTCCGGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPCS3 ENSG00000129128 UTR3 Human protein_coding chr4:177252884 chr4:177252884 . . 0 21 hm5C_associated_SNPs_120 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_120 DeepMRMD:1;iRNA_m5C:1 121 chr5 17275552 17275552 1 + C T rs3733748 17275552 + 17275532 17275572 41 GGAGGGCGAGAAGGACGCGGCGGCTGCCAAGGAGGAGGCCC GGAGGGCGAGAAGGACGCGGTGGCTGCCAAGGAGGAGGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275552 chr5:17275552 nonsynonymous SNV 0.432 1 21 hm5C_associated_SNPs_121 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_121 DeepMRMD:1;iRNA_m5C:1 122 chr5 21501804 21501804 1 + C A rs112772214 21501804 + 21501784 21501824 41 TTTGCCTTGAATCCCAGGATCCACCTTGATGTTCAGTGAAG TTTGCCTTGAATCCCAGGATACACCTTGATGTTCAGTGAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21501804 chr5:21501804 . . 0 21 hm5C_associated_SNPs_122 0 0 1 0 1 unknown 1 0 1 1 hm5C_site_122 DeepMRMD:1;iRNA_m5C:1 123 chr5 38934838 38934838 1 + C T rs182911527 38934838 + 38934818 38934858 41 GCTGGTCTCAAACTCCTGACCGCAGGTGATCCACCTGCCTC GCTGGTCTCAAACTCCTGACTGCAGGTGATCCACCTGCCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OSMR ENSG00000145623 UTR3 Human protein_coding chr5:38934838 chr5:38934838 . . 0 21 hm5C_associated_SNPs_123 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_123 DeepMRMD:1;iRNA_m5C:1 124 chr5 65350481 65350481 1 + C T rs3805466 65350481 + 65350461 65350501 41 ATCATACAGAGAGTTCCACTCAGCGGGAAGAACTCCTCCAA ATCATACAGAGAGTTCCACTTAGCGGGAAGAACTCCTCCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERBIN ENSG00000112851 CDS Human protein_coding chr5:65350481 chr5:65350481 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_124 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_124 DeepMRMD:1;iRNA_m5C:1 125 chr5 68851207 68851207 1 + C T rs556647974 68851207 + 68851187 68851227 41 TTCAAACAATTCTCCTGCCTCGGCCTCCCGAGTAGCTGGGA TTCAAACAATTCTCCTGCCTTGGCCTCCCGAGTAGCTGGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OCLN ENSG00000253203 ncRNA_intronic Human transcribed_unprocessed_pseudogene chr5:68851207 chr5:68851207 . . 0 21 hm5C_associated_SNPs_125 0 0 0 0 0 cytosol 1 0 1 1 hm5C_site_125 DeepMRMD:1;iRNA_m5C:1 126 chr5 131811491 131811491 1 + C T rs184865560 131811491 + 131811471 131811511 41 AGCATTCCCAGCAGAGGCATCGCCTGTGGACACCGCGTCTG AGCATTCCCAGCAGAGGCATTGCCTGTGGACACCGCGTCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C5orf56 ENSG00000197536 CDS Human protein_coding chr5:131811491 chr5:131811491 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_126 0 0 0 0 0 cytosol 1 0 1 1 hm5C_site_126 DeepMRMD:1;iRNA_m5C:1 127 chr5 148730879 148730879 1 + C T rs200331421 148730879 + 148730859 148730899 41 AACTGGATGTTCTCCCAGAGCGCAGTCACCTATGTTTCTTT AACTGGATGTTCTCCCAGAGTGCAGTCACCTATGTTTCTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRPEL2-AS1 ENSG00000253618 ncRNA_intronic Human antisense chr5:148730879 chr5:148730879 . . 0 21 hm5C_associated_SNPs_127 0 0 1 3 0 unknown 1 0 1 1 hm5C_site_127 DeepMRMD:1;iRNA_m5C:1 128 chr5 149228230 149228230 1 + C T rs559958278 149228230 + 149228210 149228250 41 TTTGATCCTGAGTGGTCCTGCGGTTTGTCTGTGCCTGTGGA TTTGATCCTGAGTGGTCCTGTGGTTTGTCTGTGCCTGTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPARGC1B ENSG00000155846 UTR3 Human protein_coding chr5:149228230 chr5:149228230 . . 0 21 hm5C_associated_SNPs_128 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_128 DeepMRMD:1;iRNA_m5C:1 129 chr5 149754325 149754325 1 + C T rs114326915 149754325 + 149754305 149754345 41 GGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGAAT GGGGAAGCGGGAGGAGGACTTGCAGAGCAGCAGCGAGGAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754325 chr5:149754325 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_129 1 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_129 DeepMRMD:1;iRNA_m5C:1 Treacher Collins Syndrome, Dominant Treacher Collins Syndrome, Dominant 130 chr5 159437621 159437621 1 + C G rs41275305 159437621 + 159437601 159437641 41 TACTCAGGAAGCCGAGTGTGCTGGCCCTCCAGTTCCTGATC TACTCAGGAAGCCGAGTGTGGTGGCCCTCCAGTTCCTGATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC1 ENSG00000113312 CDS Human protein_coding chr5:159437621 chr5:159437621 nonsynonymous SNV 0.061 0 21 hm5C_associated_SNPs_130 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_130 DeepMRMD:1;iRNA_m5C:1 131 chr5 170736570 170736570 1 + C A rs36095128 170736570 + 170736550 170736590 41 GCCTCCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGG GCCTCCTTTGCGGGCCTCGGAGCGCCCTTCGAGGACGCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736570 chr5:170736570 synonymous SNV . 0 21 hm5C_associated_SNPs_131 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_131 DeepMRMD:1;iRNA_m5C:1 132 chr5 174955207 174955207 1 + C A rs560486726 174955207 + 174955187 174955227 41 CAAGCGTGAGCCACCGCACCCGGCCTGAAAATATTTTCTAA CAAGCGTGAGCCACCGCACCAGGCCTGAAAATATTTTCTAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955207 chr5:174955207 . . 0 21 hm5C_associated_SNPs_132 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_132 DeepMRMD:1;iRNA_m5C:1 133 chr5 176085281 176085281 1 + C T rs115486549 176085281 + 176085261 176085301 41 AGCCTGTGCCTGCCTACTAGCGCTCTGGGGTTCGGAGAGTT AGCCTGTGCCTGCCTACTAGTGCTCTGGGGTTCGGAGAGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN17 ENSG00000048140 UTR3 Human protein_coding chr5:176085281 chr5:176085281 . . 0 21 hm5C_associated_SNPs_133 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_133 DeepMRMD:1;iRNA_m5C:1 134 chr5 177573228 177573228 1 + C A rs138696545 177573228 + 177573208 177573248 41 AGATCTGTGAGACCTTTACCCGGGACGCCTGTTCCCTGCTG AGATCTGTGAGACCTTTACCAGGGACGCCTGTTCCCTGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control RMND5B ENSG00000145916 CDS Human protein_coding chr5:177573228 chr5:177573228 synonymous SNV . 0 21 hm5C_associated_SNPs_134 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_134 DeepMRMD:1;iRNA_m5C:1 135 chr5 180614739 180614739 1 + C G rs150051789 180614739 + 180614719 180614759 41 TCTAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGGCGT TCTAAGGCGCTGGATTAAGGGTCCAGTCTCTTCGGGGGCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614739 chr5:180614739 . . 0 21 hm5C_associated_SNPs_135 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_135 DeepMRMD:1;iRNA_m5C:1 136 chr5 180614748 180614748 1 + C G rs571621440 180614748 + 180614728 180614768 41 CTGGATTAAGGCTCCAGTCTCTTCGGGGGCGTGGGTTCGAA CTGGATTAAGGCTCCAGTCTGTTCGGGGGCGTGGGTTCGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614748 chr5:180614748 . . 0 21 hm5C_associated_SNPs_136 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_136 DeepMRMD:1;iRNA_m5C:1 137 chr5 180614770 180614770 1 + C T rs569033796 180614770 + 180614750 180614790 41 TCGGGGGCGTGGGTTCGAATCCCACCGCTGCCAGTTTGTGG TCGGGGGCGTGGGTTCGAATTCCACCGCTGCCAGTTTGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614770 chr5:180614770 . . 0 21 hm5C_associated_SNPs_137 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_137 DeepMRMD:1;iRNA_m5C:1 138 chr5 180614775 180614775 1 + C A rs572539960 180614775 + 180614755 180614795 41 GGCGTGGGTTCGAATCCCACCGCTGCCAGTTTGTGGTAGTT GGCGTGGGTTCGAATCCCACAGCTGCCAGTTTGTGGTAGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614775 chr5:180614775 . . 0 21 hm5C_associated_SNPs_138 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_138 DeepMRMD:1;iRNA_m5C:1 139 chr5 180633932 180633932 1 + C T rs138838874 180633932 + 180633912 180633952 41 GCCCCGGGTTCGATCCCCGGCATCTCCAGTGTAGTTTTGCA GCCCCGGGTTCGATCCCCGGTATCTCCAGTGTAGTTTTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633932 chr5:180633932 . . 0 21 hm5C_associated_SNPs_139 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_139 DeepMRMD:1;iRNA_m5C:1 140 chr5 180634819 180634819 1 + C G rs181561952 180634819 + 180634799 180634839 41 GGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTGGTCGT GGTCGTGGGTTCGAGCCCCAGGTTGGGCGGCAACTGGTCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634819 chr5:180634819 . . 0 21 hm5C_associated_SNPs_140 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_140 DeepMRMD:1;iRNA_m5C:1 141 chr6 1313667 1313667 1 + C T rs557104756 1313667 + 1313647 1313687 41 CGCCGCCCCGCCGCCCGCGCCCGCCGCCCCGGCCTCGCCCC CGCCGCCCCGCCGCCCGCGCTCGCCGCCCCGGCCTCGCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXQ1 ENSG00000164379 CDS Human protein_coding chr6:1313667 chr6:1313667 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_141 0 0 1 0 0 exosome 1 0 1 1 hm5C_site_141 DeepMRMD:1;iRNA_m5C:1 142 chr6 1611569 1611569 1 + C T rs79691946 1611569 + 1611549 1611589 41 CCGCGCCGCCGCCGCCCGCGCCCTCCGCCCCGCCGCCGCAC CCGCGCCGCCGCCGCCCGCGTCCTCCGCCCCGCCGCCGCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXC1 ENSG00000054598 CDS Human protein_coding chr6:1611569 chr6:1611569 nonsynonymous SNV 0.012 1 21 hm5C_associated_SNPs_142 3 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_142 DeepMRMD:1;iRNA_m5C:1 Iridogoniodysgenesis type1 Iridogoniodysgenesis type1 143 chr6 21231911 21231911 1 + C T rs377601868 21231911 + 21231891 21231931 41 CTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGA CTCAAGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231911 chr6:21231911 . . 0 21 hm5C_associated_SNPs_143 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_143 DeepMRMD:1;iRNA_m5C:1 144 chr6 26328417 26328417 1 + C T rs6939540 26328417 + 26328397 26328437 41 GACTACGGATCAGAAGATTCCAGGTTCGACTCCTGGCTGGC GACTACGGATCAGAAGATTCTAGGTTCGACTCCTGGCTGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328417 chr6:26328417 . . 0 21 hm5C_associated_SNPs_144 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_144 DeepMRMD:1;iRNA_m5C:1 145 chr6 26328426 26328426 1 + C G rs146762816 26328426 + 26328406 26328446 41 TCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGAC TCAGAAGATTCCAGGTTCGAGTCCTGGCTGGCTCGTTCGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328426 chr6:26328426 . . 0 21 hm5C_associated_SNPs_145 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_145 DeepMRMD:1;iRNA_m5C:1 146 chr6 26521484 26521484 1 + C A rs189360088 26521484 + 26521464 26521504 41 TGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAA TGCGTTCAGGTCGCAGTCTCACCTGGAGGCGTGGGTTCGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521484 chr6:26521484 . . 0 21 hm5C_associated_SNPs_146 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_146 DeepMRMD:1;iRNA_m5C:1 147 chr6 26538287 26538287 1 + C G rs190949316 26538287 + 26538267 26538307 41 ATAAGCCCTTAGTGGGTTTCCGTAGTGTAGTGGTTATCACG ATAAGCCCTTAGTGGGTTTCGGTAGTGTAGTGGTTATCACG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538287 chr6:26538287 . . 0 21 hm5C_associated_SNPs_147 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_147 DeepMRMD:1;iRNA_m5C:1 148 chr6 26556784 26556784 1 + C T rs186106605 26556784 + 26556764 26556804 41 GTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGA GTTCGGGTGAGCCCGGCTAGTTCAGTCGGTAGAGCATGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556784 chr6:26556784 . . 0 21 hm5C_associated_SNPs_148 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_148 DeepMRMD:1;iRNA_m5C:1 149 chr6 26556790 26556790 1 + C A rs568173750 26556790 + 26556770 26556810 41 GTGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTA GTGAGCCCGGCTAGCTCAGTAGGTAGAGCATGAGACTCTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556790 chr6:26556790 . . 0 21 hm5C_associated_SNPs_149 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_149 DeepMRMD:1;iRNA_m5C:1 150 chr6 26556835 26556835 1 + C T rs149649999 26556835 + 26556815 26556855 41 CAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTCTGGTTT CAGGGTCGTGGGTTCGAGCCTCACGTTGGGCGCTCTGGTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556835 chr6:26556835 . . 0 21 hm5C_associated_SNPs_150 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_150 DeepMRMD:1;iRNA_m5C:1 151 chr6 26556845 26556845 1 + C A rs143390864 26556845 + 26556825 26556865 41 GGTTCGAGCCCCACGTTGGGCGCTCTGGTTTTCAATCCTAA GGTTCGAGCCCCACGTTGGGAGCTCTGGTTTTCAATCCTAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556845 chr6:26556845 . . 0 21 hm5C_associated_SNPs_151 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_151 DeepMRMD:1;iRNA_m5C:1 152 chr6 26569127 26569127 1 + C T rs192209980 26569127 + 26569107 26569147 41 GAGCGGAGGACTGTAGTTGGCTGTGTCCTTAGACATCCTTA GAGCGGAGGACTGTAGTTGGTTGTGTCCTTAGACATCCTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569127 chr6:26569127 . . 0 21 hm5C_associated_SNPs_152 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_152 DeepMRMD:1;iRNA_m5C:1 153 chr6 26569134 26569134 1 + C T rs111927231 26569134 + 26569114 26569154 41 GGACTGTAGTTGGCTGTGTCCTTAGACATCCTTAGGTCGCT GGACTGTAGTTGGCTGTGTCTTTAGACATCCTTAGGTCGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569134 chr6:26569134 . . 0 21 hm5C_associated_SNPs_153 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_153 DeepMRMD:1;iRNA_m5C:1 154 chr6 26577344 26577344 1 + C T rs569721137 26577344 + 26577324 26577364 41 TTCCGTGTCCTTCGATAGCTCAGTTGGTAGAGCGGAGGACT TTCCGTGTCCTTCGATAGCTTAGTTGGTAGAGCGGAGGACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577344 chr6:26577344 . . 0 21 hm5C_associated_SNPs_154 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_154 DeepMRMD:1;iRNA_m5C:1 155 chr6 26577370 26577370 1 + C T rs12663894 26577370 + 26577350 26577390 41 GTAGAGCGGAGGACTGTAGGCTCATTAAGCAAGGTATCCTT GTAGAGCGGAGGACTGTAGGTTCATTAAGCAAGGTATCCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577370 chr6:26577370 . . 0 21 hm5C_associated_SNPs_155 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_155 DeepMRMD:1;iRNA_m5C:1 156 chr6 26595117 26595117 1 + C A rs140030468 26595117 + 26595097 26595137 41 GACATCCTTCGATAGCTCAGCTGGTAGAGCGGAGGACTGTA GACATCCTTCGATAGCTCAGATGGTAGAGCGGAGGACTGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595117 chr6:26595117 . . 0 21 hm5C_associated_SNPs_156 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_156 DeepMRMD:1;iRNA_m5C:1 157 chr6 26701713 26701713 1 + C T rs367740197 26701713 + 26701693 26701733 41 TGCCCGAGCTCAACAGCAAGCCCTCTTAGCGCAGCTGGCAG TGCCCGAGCTCAACAGCAAGTCCTCTTAGCGCAGCTGGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701713 chr6:26701713 . . 0 21 hm5C_associated_SNPs_157 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_157 DeepMRMD:1;iRNA_m5C:1 158 chr6 26701772 26701772 1 + C T rs547971502 26701772 + 26701752 26701792 41 TGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTCT TGAAGGTCCTGAGTTCAAGCTTCAGAGAGGGCATCACTTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701772 chr6:26701772 . . 0 21 hm5C_associated_SNPs_158 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_158 DeepMRMD:1;iRNA_m5C:1 159 chr6 27059568 27059568 1 + C G rs370604102 27059568 + 27059548 27059588 41 CGCTTCGGGTGTGAGAGGTCCCGGGTTCAAATCCCGGACGA CGCTTCGGGTGTGAGAGGTCGCGGGTTCAAATCCCGGACGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27059568 chr6:27059568 . . 0 21 hm5C_associated_SNPs_159 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_159 DeepMRMD:1;iRNA_m5C:1 160 chr6 27065095 27065095 1 + C T rs185394001 27065095 + 27065075 27065115 41 GGGTTATCAAGACGAGGTGGCCGAGTGGTTAAGGCGATGGA GGGTTATCAAGACGAGGTGGTCGAGTGGTTAAGGCGATGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27065095 chr6:27065095 . . 0 21 hm5C_associated_SNPs_160 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_160 DeepMRMD:1;iRNA_m5C:1 161 chr6 27101054 27101054 1 + C T rs55867104 27101054 + 27101034 27101074 41 GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACAA GAGATCCTGGAACTGGCGGGTAACGCGGCCCGCGACAACAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101054 chr6:27101054 synonymous SNV . 0 21 hm5C_associated_SNPs_161 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_161 DeepMRMD:1;iRNA_m5C:1 162 chr6 27130075 27130075 1 + C T rs191548026 27130075 + 27130055 27130095 41 TGTGGCTTAGCTGGTCAAAGCGCCTGTCTAGTAAACAGGAG TGTGGCTTAGCTGGTCAAAGTGCCTGTCTAGTAAACAGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000265565;ENSG00000174572 intergenic Human other chr6:27130075 chr6:27130075 . . 0 21 hm5C_associated_SNPs_162 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_162 DeepMRMD:1;iRNA_m5C:1 163 chr6 27203319 27203319 1 + C A rs9468016 27203319 + 27203299 27203339 41 GTAGTGGTTATCACGTTTGCCTAACACGCGAAAGGTCCCCG GTAGTGGTTATCACGTTTGCATAACACGCGAAAGGTCCCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27203319 chr6:27203319 . . 0 21 hm5C_associated_SNPs_163 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_163 DeepMRMD:1;iRNA_m5C:1 164 chr6 27258410 27258410 1 + C T rs72839448 27258410 + 27258390 27258430 41 CAACGCAGCACACAGGTTTCCGTGGTGTAGTGGTTATCACA CAACGCAGCACACAGGTTTCTGTGGTGTAGTGGTTATCACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27258410 chr6:27258410 . . 0 21 hm5C_associated_SNPs_164 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_164 DeepMRMD:1;iRNA_m5C:1 165 chr6 27258429 27258429 1 + C T rs115729116 27258429 + 27258409 27258449 41 CCGTGGTGTAGTGGTTATCACATTCGCCTTACACGCGAAAG CCGTGGTGTAGTGGTTATCATATTCGCCTTACACGCGAAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27258429 chr6:27258429 . . 0 21 hm5C_associated_SNPs_165 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_165 DeepMRMD:1;iRNA_m5C:1 166 chr6 27261700 27261700 1 + C G rs7746841 27261700 + 27261680 27261720 41 GCTCAGTTGGTTAGAGCGTGCTGCTACTAATGCCAGGGTCG GCTCAGTTGGTTAGAGCGTGGTGCTACTAATGCCAGGGTCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261700 chr6:27261700 . . 0 21 hm5C_associated_SNPs_166 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_166 DeepMRMD:1;iRNA_m5C:1 167 chr6 27261713 27261713 1 + C T rs74715010 27261713 + 27261693 27261733 41 GAGCGTGCTGCTACTAATGCCAGGGTCGAGGTTTCGATCCC GAGCGTGCTGCTACTAATGCTAGGGTCGAGGTTTCGATCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261713 chr6:27261713 . . 0 21 hm5C_associated_SNPs_167 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_167 DeepMRMD:1;iRNA_m5C:1 168 chr6 27263252 27263252 1 + C T rs16897345 27263252 + 27263232 27263272 41 AGCACTCTGGACTCTGAATCCGGTAATCCGAGTTCAAATCT AGCACTCTGGACTCTGAATCTGGTAATCCGAGTTCAAATCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263252 chr6:27263252 . . 0 21 hm5C_associated_SNPs_168 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_168 DeepMRMD:1;iRNA_m5C:1 169 chr6 27265827 27265827 1 + C G rs62401095 27265827 + 27265807 27265847 41 TGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAATCCCA TGCTAATCCATTGTGCTCTGGACGCGTGGGTTCGAATCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265827 chr6:27265827 . . 0 21 hm5C_associated_SNPs_169 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_169 DeepMRMD:1;iRNA_m5C:1 170 chr6 27265855 27265855 1 + C T rs184865702 27265855 + 27265835 27265875 41 GGTTCGAATCCCACCTTCGTCGACCGTTTTCTTTAAGAGGG GGTTCGAATCCCACCTTCGTTGACCGTTTTCTTTAAGAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265855 chr6:27265855 . . 0 21 hm5C_associated_SNPs_170 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_170 DeepMRMD:1;iRNA_m5C:1 171 chr6 27487367 27487367 1 + C A rs6923016 27487367 + 27487347 27487387 41 CCAGCGATCCGAGTTCAAATCTCGGTGGAACCTGTCGTTTC CCAGCGATCCGAGTTCAAATATCGGTGGAACCTGTCGTTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487367 chr6:27487367 . . 0 21 hm5C_associated_SNPs_171 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_171 DeepMRMD:1;iRNA_m5C:1 172 chr6 27487377 27487377 1 + C G rs74776839 27487377 + 27487357 27487397 41 GAGTTCAAATCTCGGTGGAACCTGTCGTTTCTTCTTGCTTC GAGTTCAAATCTCGGTGGAAGCTGTCGTTTCTTCTTGCTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487377 chr6:27487377 . . 0 21 hm5C_associated_SNPs_172 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_172 DeepMRMD:1;iRNA_m5C:1 173 chr6 27487378 27487378 1 + C G rs185755837 27487378 + 27487358 27487398 41 AGTTCAAATCTCGGTGGAACCTGTCGTTTCTTCTTGCTTCC AGTTCAAATCTCGGTGGAACGTGTCGTTTCTTCTTGCTTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487378 chr6:27487378 . . 0 21 hm5C_associated_SNPs_173 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_173 DeepMRMD:1;iRNA_m5C:1 174 chr6 27586150 27586150 1 + C A rs61415880 27586150 + 27586130 27586170 41 ATCGTGGCCCTGTAGCTCAGCGGTTGGAGCGCTGGTCTCGT ATCGTGGCCCTGTAGCTCAGAGGTTGGAGCGCTGGTCTCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586150 chr6:27586150 . . 0 21 hm5C_associated_SNPs_174 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_174 DeepMRMD:1;iRNA_m5C:1 175 chr6 27586159 27586159 1 + C T rs145791158 27586159 + 27586139 27586179 41 CTGTAGCTCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGG CTGTAGCTCAGCGGTTGGAGTGCTGGTCTCGTAAACCTAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586159 chr6:27586159 . . 0 21 hm5C_associated_SNPs_175 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_175 DeepMRMD:1;iRNA_m5C:1 176 chr6 27636387 27636387 1 + C T rs149096466 27636387 + 27636367 27636407 41 GTTAGCTCAGTCGGCTAGAGCGTGGTGCTAATAACGCCAAG GTTAGCTCAGTCGGCTAGAGTGTGGTGCTAATAACGCCAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27636387 chr6:27636387 . . 0 21 hm5C_associated_SNPs_176 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_176 DeepMRMD:1;iRNA_m5C:1 177 chr6 27636410 27636410 1 + C A rs113533199 27636410 + 27636390 27636430 41 GGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACG GGTGCTAATAACGCCAAGGTAGCGGGTTCGATCCCCGTACG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27636410 chr6:27636410 . . 0 21 hm5C_associated_SNPs_177 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_177 DeepMRMD:1;iRNA_m5C:1 178 chr6 27694498 27694498 1 + C A rs547002854 27694498 + 27694478 27694518 41 CGTGGCTTAGCTGGTTAAAGCGCCTGTCTAGTAAACAGGAG CGTGGCTTAGCTGGTTAAAGAGCCTGTCTAGTAAACAGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01012;LOC100131289 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27694498 chr6:27694498 . . 0 21 hm5C_associated_SNPs_178 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_178 DeepMRMD:1;iRNA_m5C:1 179 chr6 27745718 27745718 1 + C G rs537629280 27745718 + 27745698 27745738 41 TAACCCAGAGGTCGATGGATCTAAACCATCCTCTGCTAAAG TAACCCAGAGGTCGATGGATGTAAACCATCCTCTGCTAAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745718 chr6:27745718 . . 0 21 hm5C_associated_SNPs_179 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_179 DeepMRMD:1;iRNA_m5C:1 180 chr6 28611269 28611269 1 + C A rs559361842 28611269 + 28611249 28611289 41 TGCTTTGCATGTATGAGGTCCCGGGTTCGATCCCCGGCATC TGCTTTGCATGTATGAGGTCACGGGTTCGATCCCCGGCATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9;LINC00533 ENSG00000271440;ENSG00000272278 intergenic Human other chr6:28611269 chr6:28611269 . . 0 21 hm5C_associated_SNPs_180 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_180 DeepMRMD:1;iRNA_m5C:1 181 chr6 28678406 28678406 1 + C G rs369829956 28678406 + 28678386 28678426 41 GAGCGCGTGCTTAGCATGCACGAGGCCCTGGGTTCAATCCC GAGCGCGTGCTTAGCATGCAGGAGGCCCTGGGTTCAATCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678406 chr6:28678406 . . 0 21 hm5C_associated_SNPs_181 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_181 DeepMRMD:1;iRNA_m5C:1 182 chr6 28693800 28693800 1 + C T rs145472571 28693800 + 28693780 28693820 41 AAAACAGTCTCCGTGGGCTCCGTAGCTTAGTTGGTTAAAGC AAAACAGTCTCCGTGGGCTCTGTAGCTTAGTTGGTTAAAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693800 chr6:28693800 . . 0 21 hm5C_associated_SNPs_182 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_182 DeepMRMD:1;iRNA_m5C:1 183 chr6 28693827 28693827 1 + C A rs572623484 28693827 + 28693807 28693847 41 TAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCCTGG TAGTTGGTTAAAGCGCCTGTATAGTAAACAGGAGATCCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693827 chr6:28693827 . . 0 21 hm5C_associated_SNPs_183 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_183 DeepMRMD:1;iRNA_m5C:1 184 chr6 28693844 28693844 1 + C T rs188401418 28693844 + 28693824 28693864 41 TGTCTAGTAAACAGGAGATCCTGGGTTCGACTCCCAGCGGG TGTCTAGTAAACAGGAGATCTTGGGTTCGACTCCCAGCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693844 chr6:28693844 . . 0 21 hm5C_associated_SNPs_184 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_184 DeepMRMD:1;iRNA_m5C:1 185 chr6 28715523 28715523 1 + C G rs369041602 28715523 + 28715503 28715543 41 GGGTTGCGTCTACCCAGGGCCTGGATAGCTCAGTTGGTAGA GGGTTGCGTCTACCCAGGGCGTGGATAGCTCAGTTGGTAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715523 chr6:28715523 . . 0 21 hm5C_associated_SNPs_185 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_185 DeepMRMD:1;iRNA_m5C:1 186 chr6 28715545 28715545 1 + C A rs7764775 28715545 + 28715525 28715565 41 GGATAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACG GGATAGCTCAGTTGGTAGAAAATCAGACTTTTAATCTGACG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715545 chr6:28715545 . . 0 21 hm5C_associated_SNPs_186 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_186 DeepMRMD:1;iRNA_m5C:1 187 chr6 28715548 28715548 1 + C A rs190921203 28715548 + 28715528 28715568 41 TAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTG TAGCTCAGTTGGTAGAACATAAGACTTTTAATCTGACGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715548 chr6:28715548 . . 0 21 hm5C_associated_SNPs_187 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_187 DeepMRMD:1;iRNA_m5C:1 188 chr6 28715564 28715564 1 + C A rs6929372 28715564 + 28715544 28715584 41 ACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCT ACATCAGACTTTTAATCTGAAGGTGCAGGGTTCAAGTCCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715564 chr6:28715564 . . 0 21 hm5C_associated_SNPs_188 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_188 DeepMRMD:1;iRNA_m5C:1 189 chr6 28908873 28908873 1 + C A rs115765101 28908873 + 28908853 28908893 41 GGCGCCAGACTCAAGCTTGGCTTCCTCGTGTTGAGGATTCT GGCGCCAGACTCAAGCTTGGATTCCTCGTGTTGAGGATTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908873 chr6:28908873 . . 0 21 hm5C_associated_SNPs_189 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_189 DeepMRMD:1;iRNA_m5C:1 190 chr6 28908909 28908909 1 + C G rs58800808 28908909 + 28908889 28908929 41 ATTCTGGTCTCCAATGGAGGCGTGGGTTCGAATCCCACTTC ATTCTGGTCTCCAATGGAGGGGTGGGTTCGAATCCCACTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908909 chr6:28908909 . . 0 21 hm5C_associated_SNPs_190 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_190 DeepMRMD:1;iRNA_m5C:1 191 chr6 28912399 28912399 1 + C T rs140736187 28912399 + 28912379 28912419 41 CAGTCTCATAATCTGAAGGTCCTGAGTTCGAACCTCAGAGG CAGTCTCATAATCTGAAGGTTCTGAGTTCGAACCTCAGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912399 chr6:28912399 . . 0 21 hm5C_associated_SNPs_191 0 1 1 0 0 unknown 1 0 1 1 hm5C_site_191 DeepMRMD:1;iRNA_m5C:1 Tonsillectomy 192 chr6 28918809 28918809 1 + C A rs182035589 28918809 + 28918789 28918829 41 GAAGGCTTTTGCAGGGAGCCCGGATAGCTCAGTCGGTAGAG GAAGGCTTTTGCAGGGAGCCAGGATAGCTCAGTCGGTAGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918809 chr6:28918809 . . 0 21 hm5C_associated_SNPs_192 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_192 DeepMRMD:1;iRNA_m5C:1 193 chr6 28918830 28918830 1 + C T rs376954407 28918830 + 28918810 28918850 41 GGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG GGATAGCTCAGTCGGTAGAGTATCAGACTTTTAATCTGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918830 chr6:28918830 . . 0 21 hm5C_associated_SNPs_193 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_193 DeepMRMD:1;iRNA_m5C:1 194 chr6 28918854 28918854 1 + C A rs115194890 28918854 + 28918834 28918874 41 AGACTTTTAATCTGAGGGTCCAGGGTTCAAGTCCCTGTTCG AGACTTTTAATCTGAGGGTCAAGGGTTCAAGTCCCTGTTCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918854 chr6:28918854 . . 0 21 hm5C_associated_SNPs_194 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_194 DeepMRMD:1;iRNA_m5C:1 195 chr6 28950013 28950013 1 + C A rs57071012 28950013 + 28949993 28950033 41 GTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGAT GTTAGGATTCGGCGCTCTCAACGCCGCGGCCCGGGTTCGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950013 chr6:28950013 . . 0 21 hm5C_associated_SNPs_195 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_195 DeepMRMD:1;iRNA_m5C:1 196 chr6 28950014 28950014 1 + C A rs546018964 28950014 + 28949994 28950034 41 TTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATT TTAGGATTCGGCGCTCTCACAGCCGCGGCCCGGGTTCGATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950014 chr6:28950014 . . 0 21 hm5C_associated_SNPs_196 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_196 DeepMRMD:1;iRNA_m5C:1 197 chr6 28950016 28950016 1 + C A rs192373984 28950016 + 28949996 28950036 41 AGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCC AGGATTCGGCGCTCTCACCGACGCGGCCCGGGTTCGATTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950016 chr6:28950016 . . 0 21 hm5C_associated_SNPs_197 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_197 DeepMRMD:1;iRNA_m5C:1 198 chr6 28950035 28950035 1 + C A rs184275668 28950035 + 28950015 28950055 41 GCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGAGGTTT GCCGCGGCCCGGGTTCGATTACCGGTCAGGGAATGAGGTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950035 chr6:28950035 . . 0 21 hm5C_associated_SNPs_198 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_198 DeepMRMD:1;iRNA_m5C:1 199 chr6 29910604 29910604 1 + C A rs12721675 29910604 + 29910584 29910624 41 GGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACAC GGGGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29910604 chr6:29910604 synonymous SNV . 0 21 hm5C_associated_SNPs_199 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_199 DeepMRMD:1;iRNA_m5C:1 200 chr6 29913374 29913374 1 + C G rs1061815 29913374 + 29913354 29913394 41 AATGTGAGGAGGTGGGGAGACCACCCCACCCCCATGTCCAC AATGTGAGGAGGTGGGGAGAGCACCCCACCCCCATGTCCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HLA-A ENSG00000206503 UTR3 Human protein_coding chr6:29913374 chr6:29913374 . . 0 21 hm5C_associated_SNPs_200 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_200 DeepMRMD:1;iRNA_m5C:1 201 chr6 29976024 29976024 1 + C G rs3765604 29976024 + 29976004 29976044 41 AACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACC AACATGAGGCATAACGAGGTGCTGGGTTCTGGGCTTCTACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976024 chr6:29976024 . . 0 21 hm5C_associated_SNPs_201 0 0 0 0 1 unknown 1 0 1 1 hm5C_site_201 DeepMRMD:1;iRNA_m5C:1 202 chr6 30887972 30887972 1 + C T rs2285319 30887972 + 30887952 30887992 41 GAGGATGGGACCATGACCTCCCTCTGCGGGGACTGGCTGCA GAGGATGGGACCATGACCTCTCTCTGCGGGGACTGGCTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30887972 chr6:30887972 synonymous SNV . 0 21 hm5C_associated_SNPs_202 1 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_202 DeepMRMD:1;iRNA_m5C:1 not specified not specified 203 chr6 31602074 31602074 1 + C G rs144034863 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGATA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602074 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_203 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_203 DeepMRMD:1;iRNA_m5C:1 204 chr6 31803074 31803074 1 + C T rs17201241 31803074 + 31803054 31803094 41 CAGGTAACTCTTGAGTGTGTCGCTGATGCCATCACCGCAGC CAGGTAACTCTTGAGTGTGTTGCTGATGCCATCACCGCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD48 ENSG00000201823 ncRNA_exonic Human snoRNA chr6:31803074 chr6:31803074 . . 0 21 hm5C_associated_SNPs_204 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_204 DeepMRMD:1;iRNA_m5C:1 205 chr6 33239873 33239873 1 + C G rs139139654 33239873 + 33239853 33239893 41 TCTCTTCCACAGGAGGCCTACACGCCGCCGCTTGTGCTGCA TCTCTTCCACAGGAGGCCTAGACGCCGCCGCTTGTGCTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS18 ENSG00000231500 UTR5 Human protein_coding chr6:33239873 chr6:33239873 . . 0 21 hm5C_associated_SNPs_205 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_205 DeepMRMD:1;iRNA_m5C:1 206 chr6 35047313 35047313 1 + C T rs138150663 35047313 + 35047293 35047333 41 GTGAAGGCTCTGGGTTATGACGGGAACAGCCCCCCTAGCGT GTGAAGGCTCTGGGTTATGATGGGAACAGCCCCCCTAGCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:35047313 chr6:35047313 synonymous SNV . 0 21 hm5C_associated_SNPs_206 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_206 DeepMRMD:1;iRNA_m5C:1 207 chr6 37787623 37787623 1 + C T rs182727321 37787623 + 37787603 37787643 41 CCTTCCCCCTCCCCCCGCCCCGAGCCCCCCGACGCCGCCGC CCTTCCCCCTCCCCCCGCCCTGAGCCCCCCGACGCCGCCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFAND3 ENSG00000156639 UTR5 Human protein_coding chr6:37787623 chr6:37787623 . . 0 21 hm5C_associated_SNPs_207 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_207 DeepMRMD:1;iRNA_m5C:1 208 chr6 41755410 41755410 1 + C G rs9471653 41755410 + 41755390 41755430 41 ACGCCGATACGGTTCCTCCACCGAGGCCCATGCGAAGCTTT ACGCCGATACGGTTCCTCCAGCGAGGCCCATGCGAAGCTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOMM6 ENSG00000214736;ENSG00000124593 UTR5;UTR3 Human other chr6:41755410 chr6:41755410 . . 0 21 hm5C_associated_SNPs_208 0 0 1 1 0 chromatin 1 0 1 1 hm5C_site_208 DeepMRMD:1;iRNA_m5C:1 209 chr6 42855945 42855945 1 + C G rs552431809 42855945 + 42855925 42855965 41 CCCTGTTGCCCAGGCTGGAGCGCAGTGGCATGATCTCAGCT CCCTGTTGCCCAGGCTGGAGGGCAGTGGCATGATCTCAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42855945 chr6:42855945 . . 0 21 hm5C_associated_SNPs_209 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_209 DeepMRMD:1;iRNA_m5C:1 210 chr6 43608407 43608407 1 + C T rs77559853 43608407 + 43608387 43608427 41 TCCTTCTGGTTGTCTGCCTCCCCTCAGATTTCCTGATAGGC TCCTTCTGGTTGTCTGCCTCTCCTCAGATTTCCTGATAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAD2L1BP ENSG00000124688 UTR3 Human protein_coding chr6:43608407 chr6:43608407 . . 0 21 hm5C_associated_SNPs_210 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_210 DeepMRMD:1;iRNA_m5C:1 211 chr6 44214838 44214838 1 + C G rs138561119 44214838 + 44214818 44214858 41 ACTTGGGGCACGCAGTAGCTCTCTCGAGTCACTCCGGCGCA ACTTGGGGCACGCAGTAGCTGTCTCGAGTCACTCCGGCGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSP90AB1 ENSG00000096384 UTR5 Human protein_coding chr6:44214838 chr6:44214838 . . 0 21 hm5C_associated_SNPs_211 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_211 DeepMRMD:1;iRNA_m5C:1 212 chr6 56955006 56955006 1 + C A rs550274742 56955006 + 56954986 56955026 41 ATTCGTGGCGACGGCGGCGGCAGGGACAGCAGGAGCAGTGG ATTCGTGGCGACGGCGGCGGAAGGGACAGCAGGAGCAGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF451 ENSG00000112200 UTR5 Human protein_coding chr6:56955006 chr6:56955006 . . 0 21 hm5C_associated_SNPs_212 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_212 DeepMRMD:1;iRNA_m5C:1 213 chr6 74493537 74493537 1 + C T rs138465270 74493537 + 74493517 74493557 41 GGGTCTTGGACTAACAACTACTCCAGTGGAGGTATTGTATT GGGTCTTGGACTAACAACTATTCCAGTGGAGGTATTGTATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CD109 ENSG00000156535 CDS Human protein_coding chr6:74493537 chr6:74493537 nonsynonymous SNV 0.082 0 21 hm5C_associated_SNPs_213 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_213 DeepMRMD:1;iRNA_m5C:1 214 chr6 88376924 88376924 1 + C A rs2307380 88376924 + 88376904 88376944 41 ATTTACATATATTAGAGGAGCCTGTTTTGTTGAGAAGATAA ATTTACATATATTAGAGGAGACTGTTTTGTTGAGAAGATAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ORC3 ENSG00000135336 UTR3 Human protein_coding chr6:88376924 chr6:88376924 . . 0 21 hm5C_associated_SNPs_214 0 0 1 1 0 Cytosol 1 0 1 1 hm5C_site_214 DeepMRMD:1;iRNA_m5C:1 215 chr6 90342271 90342271 1 + G A rs114545831 90342271 - 90342251 90342291 41 GGTGGCACACGCCTGTAGTCCCAAGCTACTTGCGAGGTTGA GGTGGCACACGCCTGTAGTCTCAAGCTACTTGCGAGGTTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANKRD6;LYRM2 ENSG00000083099;ENSG00000135299 UTR3 Human other chr6:90342271 chr6:90342271 . . 0 21 hm5C_associated_SNPs_215 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_215 DeepMRMD:1;iRNA_m5C:1 216 chr6 108487936 108487936 1 + C T rs17840265 108487936 + 108487916 108487956 41 GCCGGCCGGGACTCGGGCAGCGCCCACCAACCGCTCCGCCC GCCGGCCGGGACTCGGGCAGTGCCCACCAACCGCTCCGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR2E1 ENSG00000112333 UTR5 Human protein_coding chr6:108487936 chr6:108487936 . . 0 21 hm5C_associated_SNPs_216 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_216 DeepMRMD:1;iRNA_m5C:1 217 chr6 145503907 145503907 1 + C G rs117561287 145503907 + 145503887 145503927 41 GGGCTTTGAATCCAGCAATCCGAGTTCGAATCTTGGTGGGA GGGCTTTGAATCCAGCAATCGGAGTTCGAATCTTGGTGGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target UTRN;EPM2A ENSG00000152818;ENSG00000221796 intergenic Human other chr6:145503907 chr6:145503907 . . 0 21 hm5C_associated_SNPs_217 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_217 DeepMRMD:1;iRNA_m5C:1 218 chr6 151670287 151670287 1 + C T rs73780648 151670287 + 151670267 151670307 41 AAGCCACGCAGAAATTTCTCCCCCAGCCGAATCTGGCCAAG AAGCCACGCAGAAATTTCTCTCCCAGCCGAATCTGGCCAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151670287 chr6:151670287 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_218 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_218 DeepMRMD:1;iRNA_m5C:1 219 chr6 158492660 158492660 1 + C T rs146694394 158492660 + 158492640 158492680 41 AGCCATCGACACAGTGAAGACGGGCATGGGGGGCAAGGCGG AGCCATCGACACAGTGAAGATGGGCATGGGGGGCAAGGCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158492660 chr6:158492660 nonsynonymous SNV 0.972 4 21 hm5C_associated_SNPs_219 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_219 DeepMRMD:1;iRNA_m5C:1 220 chr6 159181716 159181716 1 + C G rs138798431 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAGAGCTGACAGTCCGGGCTAAGCTGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181716 synonymous SNV . 0 21 hm5C_associated_SNPs_220 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_220 DeepMRMD:1;iRNA_m5C:1 221 chr6 170176647 170176647 1 + C T rs4716399 170176647 + 170176627 170176667 41 CTGGTTGTGCTCCGAAGCATCAGCGAACAGTGCCGCCGTGT CTGGTTGTGCTCCGAAGCATTAGCGAACAGTGCCGCCGTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ERMARD ENSG00000130023 CDS Human protein_coding chr6:170176647 chr6:170176647 synonymous SNV . 0 21 hm5C_associated_SNPs_221 1 0 0 0 1 chromatin 1 0 1 1 hm5C_site_221 DeepMRMD:1;iRNA_m5C:1 not specified not specified 222 chr7 819711 819711 1 + C T rs140641290 819711 + 819691 819731 41 TCCTACTATCAGAGCAGTGTCCAGTACCTGTACCGAGAGTT TCCTACTATCAGAGCAGTGTTCAGTACCTGTACCGAGAGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:819711 chr7:819711 synonymous SNV . 0 21 hm5C_associated_SNPs_222 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_222 DeepMRMD:1;iRNA_m5C:1 223 chr7 1580589 1580589 1 + C T rs142847928 1580589 + 1580569 1580609 41 GTGATCCGCGTCTGCCTTAGCAGGGGCCTGCGTGAGTGGGC GTGATCCGCGTCTGCCTTAGTAGGGGCCTGCGTGAGTGGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MAFK ENSG00000256005 ncRNA_exonic Human other chr7:1580589 chr7:1580589 . . 0 21 hm5C_associated_SNPs_223 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_223 DeepMRMD:1;iRNA_m5C:1 224 chr7 2394991 2394991 1 + C T rs11551167 2394991 + 2394971 2395011 41 GAACCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCCCTC GAACCCCGGGCGCTGGAGAATGGCGACGCGGACGAGCCCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2394991 chr7:2394991 synonymous SNV . 0 21 hm5C_associated_SNPs_224 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_224 DeepMRMD:1;iRNA_m5C:1 225 chr7 2395008 2395008 1 + C T rs545964398 2395008 + 2394988 2395028 41 GAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGG GAACGGCGACGCGGACGAGCTCTCCTTCAGCGACCCCGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395008 chr7:2395008 nonsynonymous SNV 0.946 1 21 hm5C_associated_SNPs_225 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_225 DeepMRMD:1;iRNA_m5C:1 226 chr7 4306901 4306901 1 + C T rs192254914 4306901 + 4306881 4306921 41 CCTCCCTCCCTCCTTCCCTCCCTTCCTTCCTCTCTTTCCTC CCTCCCTCCCTCCTTCCCTCTCTTCCTTCCTCTCTTTCCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306901 chr7:4306901 . . 0 21 hm5C_associated_SNPs_226 0 0 0 0 0 cytosol 1 0 1 1 hm5C_site_226 DeepMRMD:1;iRNA_m5C:1 227 chr7 4306938 4306938 1 + C G rs151091785 4306938 + 4306918 4306958 41 CCTCCTTCCTTCCCTCCCTTCTTTCCCTCCCTCCCTTCCTC CCTCCTTCCTTCCCTCCCTTGTTTCCCTCCCTCCCTTCCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306938 chr7:4306938 . . 0 21 hm5C_associated_SNPs_227 0 0 1 0 0 cytosol 1 0 1 1 hm5C_site_227 DeepMRMD:1;iRNA_m5C:1 228 chr7 5230037 5230037 1 + C T rs542906466 5230037 + 5230017 5230057 41 TCCCCGGCCGGGCCCACTCGCCGCGCGCCCAGCCATGAACC TCCCCGGCCGGGCCCACTCGTCGCGCGCCCAGCCATGAACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 UTR5 Human protein_coding chr7:5230037 chr7:5230037 . . 0 21 hm5C_associated_SNPs_228 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_228 DeepMRMD:1;iRNA_m5C:1 229 chr7 5645521 5645521 1 + C T rs185458134 5645521 + 5645501 5645541 41 TCCCAGCCACCTCCTCCCAGCCCCCCAGGAGAGCTGGGCAC TCCCAGCCACCTCCTCCCAGTCCCCCAGGAGAGCTGGGCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 UTR3 Human protein_coding chr7:5645521 chr7:5645521 . . 0 21 hm5C_associated_SNPs_229 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_229 DeepMRMD:1;iRNA_m5C:1 230 chr7 30634661 30634661 1 + C A rs1049402 30634661 + 30634641 30634681 41 CCCTCAGCGCGGCCTCCTGCCCCCCGATCTCCTTGCCCGCC CCCTCAGCGCGGCCTCCTGCACCCCGATCTCCTTGCCCGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GARS ENSG00000106105 CDS Human protein_coding chr7:30634661 chr7:30634661 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_230 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_230 DeepMRMD:1;iRNA_m5C:1 231 chr7 38217965 38217965 1 + C T rs546943699 38217965 + 38217945 38217985 41 CCCTCAGGCCGGGGCGCGACCGCGGATCCGCAGTTCCCGGG CCCTCAGGCCGGGGCGCGACTGCGGATCCGCAGTTCCCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STARD3NL ENSG00000010270 UTR5 Human protein_coding chr7:38217965 chr7:38217965 . . 0 21 hm5C_associated_SNPs_231 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_231 DeepMRMD:1;iRNA_m5C:1 232 chr7 40135523 40135523 1 + C T rs536324642 40135523 + 40135503 40135543 41 AAAGAAAGGGAGTAGAACTGCAATCAGTACATATTGTTTGA AAAGAAAGGGAGTAGAACTGTAATCAGTACATATTGTTTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 UTR3 Human protein_coding chr7:40135523 chr7:40135523 . . 0 21 hm5C_associated_SNPs_232 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_232 DeepMRMD:1;iRNA_m5C:1 233 chr7 44084292 44084292 1 + C G rs4430012 44084292 + 44084272 44084312 41 GTCAAAGGGGCGGCCCGGCCCGGCCCGGAAGCTACAGCAGC GTCAAAGGGGCGGCCCGGCCGGGCCCGGAAGCTACAGCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DBNL ENSG00000136279 UTR5 Human protein_coding chr7:44084292 chr7:44084292 . . 0 21 hm5C_associated_SNPs_233 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_233 DeepMRMD:1;iRNA_m5C:1 234 chr7 56136260 56136260 1 + C A rs4245575 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCAGAGATGGTGAAGGGCCTGTGCGGGAGGCGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136260 nonsynonymous SNV 0.945 1 21 hm5C_associated_SNPs_234 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_234 DeepMRMD:1;iRNA_m5C:1 235 chr7 56147214 56147214 1 + C A rs143972395 56147214 + 56147194 56147234 41 GTCCTCTCTCCCCTTCTCTGCTGGCAGGATGGGCAACACTC GTCCTCTCTCCCCTTCTCTGATGGCAGGATGGGCAACACTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SUMF2 ENSG00000129103 UTR3 Human protein_coding chr7:56147214 chr7:56147214 . . 0 21 hm5C_associated_SNPs_235 0 0 1 1 0 Ribosome 1 0 1 1 hm5C_site_235 DeepMRMD:1;iRNA_m5C:1 236 chr7 72848854 72848854 1 + C T rs536929629 72848854 + 72848834 72848874 41 CCCACAAGGGCCTGGGCATGCTGCCCGTGGCGCCGCGGCCC CCCACAAGGGCCTGGGCATGTTGCCCGTGGCGCCGCGGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FZD9 ENSG00000188763 CDS Human protein_coding chr7:72848854 chr7:72848854 synonymous SNV . 0 21 hm5C_associated_SNPs_236 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_236 DeepMRMD:1;iRNA_m5C:1 237 chr7 73731906 73731906 1 + C T rs148561130 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCTGGCCGTGGGGGGAAGCACTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731906 synonymous SNV . 0 21 hm5C_associated_SNPs_237 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_237 DeepMRMD:1;iRNA_m5C:1 238 chr7 75933439 75933439 1 + C T rs528301561 75933439 + 75933419 75933459 41 GTCACCTTCGAGTCGCGGGCCCAGCTTGGGGGCCCAGAAGC GTCACCTTCGAGTCGCGGGCTCAGCTTGGGGGCCCAGAAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933439 chr7:75933439 synonymous SNV . 0 21 hm5C_associated_SNPs_238 1 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_238 DeepMRMD:1;iRNA_m5C:1 Charcot-Marie-Tooth disease type 2F Charcot-Marie-Tooth disease type 2F 239 chr7 77256319 77256319 1 + C T rs114128568 77256319 + 77256299 77256339 41 AGTTTTGAGATTAAGAAGGTCCCTCTCCAAGAGGGACCAAA AGTTTTGAGATTAAGAAGGTTCCTCTCCAAGAGGGACCAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256319 chr7:77256319 synonymous SNV . 0 21 hm5C_associated_SNPs_239 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_239 DeepMRMD:1;iRNA_m5C:1 240 chr7 90016542 90016542 1 + C G rs186044519 90016542 + 90016522 90016562 41 TGTCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA TGTCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAGGAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control GTPBP10 ENSG00000105793 UTR3 Human protein_coding chr7:90016542 chr7:90016542 . . 0 21 hm5C_associated_SNPs_240 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_240 DeepMRMD:1;iRNA_m5C:1 241 chr7 90837606 90837606 1 + C T rs150812728 90837606 + 90837586 90837626 41 AAGATGAAAAAGGGAATGGGCCAGCTTCCCTTACTCAAGGA AAGATGAAAAAGGGAATGGGTCAGCTTCCCTTACTCAAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK14 ENSG00000058091 UTR3 Human protein_coding chr7:90837606 chr7:90837606 . . 0 21 hm5C_associated_SNPs_241 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_241 DeepMRMD:1;iRNA_m5C:1 242 chr7 94043239 94043239 1 + C A rs42524 94043239 + 94043219 94043259 41 GAAAAGGTGAACAGGGTCCCCCTGGTCCTCCAGGCTTCCAG GAAAAGGTGAACAGGGTCCCACTGGTCCTCCAGGCTTCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94043239 chr7:94043239 nonsynonymous SNV 0.970 2 21 hm5C_associated_SNPs_242 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_242 DeepMRMD:1;iRNA_m5C:1 243 chr7 100303809 100303809 1 + C T rs78597009 100303809 + 100303789 100303829 41 AGCTGGCTGGCTGCTTGCACCCACATCCTTCTTTCTCTGGG AGCTGGCTGGCTGCTTGCACTCACATCCTTCTTTCTCTGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POP7 ENSG00000172336 UTR5 Human protein_coding chr7:100303809 chr7:100303809 . . 0 21 hm5C_associated_SNPs_243 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_243 DeepMRMD:1;iRNA_m5C:1 244 chr7 100861475 100861475 1 + C T rs10215517 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCTAATGGTGGAGAAGAAAACTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861475 chr7:100861475 . . 0 21 hm5C_associated_SNPs_244 0 0 1 4 1 Cytosol 1 0 1 1 hm5C_site_244 DeepMRMD:1;iRNA_m5C:1 245 chr7 101916646 101916646 1 + C G rs62001055 101916646 + 101916626 101916666 41 TTTGGCCACAGGACGCTGTGCAGAGCTGCAAGTCCGTATCA TTTGGCCACAGGACGCTGTGGAGAGCTGCAAGTCCGTATCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101916646 chr7:101916646 nonsynonymous SNV 0.964 0 21 hm5C_associated_SNPs_245 0 0 0 0 1 Exosome 1 0 1 1 hm5C_site_245 DeepMRMD:1;iRNA_m5C:1 246 chr7 128142851 128142851 1 + C T rs530534166 128142851 + 128142831 128142871 41 TAATCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTG TAATCCAGCTACTCGGGAGGTTGAGGCAGGAGAATCACTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control METTL2B ENSG00000165055 UTR3 Human protein_coding chr7:128142851 chr7:128142851 . . 0 21 hm5C_associated_SNPs_246 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_246 DeepMRMD:1;iRNA_m5C:1 247 chr7 128423508 128423508 1 + C T rs533242301 128423508 + 128423488 128423528 41 AGAGATAACTACCAGTGGCTCGTTGGTCTAGGGGTATGATT AGAGATAACTACCAGTGGCTTGTTGGTCTAGGGGTATGATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OPN1SW;CCDC136 ENSG00000128617;ENSG00000128596 intergenic Human other chr7:128423508 chr7:128423508 . . 0 21 hm5C_associated_SNPs_247 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_247 DeepMRMD:1;iRNA_m5C:1 248 chr7 128423552 128423552 1 + C T rs147868566 128423552 + 128423532 128423572 41 GCTTAGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAG GCTTAGGGTGCGAGAGGTCCTGGGTTCAAATCCCGGACGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OPN1SW;CCDC136 ENSG00000128617;ENSG00000128596 intergenic Human other chr7:128423552 chr7:128423552 . . 0 21 hm5C_associated_SNPs_248 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_248 DeepMRMD:1;iRNA_m5C:1 249 chr7 130145329 130145329 1 + C T rs190221868 130145329 + 130145309 130145349 41 GGGGGCTCCTTCCCTCTCCTCGAATGACGTTATGGGCACAT GGGGGCTCCTTCCCTCTCCTTGAATGACGTTATGGGCACAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEST ENSG00000106484 UTR3 Human protein_coding chr7:130145329 chr7:130145329 . . 0 21 hm5C_associated_SNPs_249 0 0 0 2 0 Ribosome 1 0 1 1 hm5C_site_249 DeepMRMD:1;iRNA_m5C:1 250 chr7 134215396 134215396 1 + C G rs138887023 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTGTCCTCTTGGCAAAGTGAAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215396 nonsynonymous SNV 0.018 2 21 hm5C_associated_SNPs_250 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_250 DeepMRMD:1;iRNA_m5C:1 251 chr7 139044963 139044963 1 + C A rs190082672 139044963 + 139044943 139044983 41 TCCCCCAGCCCAAAAGGGCCCGGTCTGCGCCCCACCCCCGC TCCCCCAGCCCAAAAGGGCCAGGTCTGCGCCCCACCCCCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LUC7L2 ENSG00000146963 UTR5 Human protein_coding chr7:139044963 chr7:139044963 . . 0 21 hm5C_associated_SNPs_251 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_251 DeepMRMD:1;iRNA_m5C:1 252 chr7 142458437 142458437 1 + C T rs372637371 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATTGTTGGGGGCTACAACTGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458437 synonymous SNV . 0 21 hm5C_associated_SNPs_252 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_252 DeepMRMD:1;iRNA_m5C:1 253 chr7 142459703 142459703 1 + C T rs139664510 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATTATCCGCCACCCCCAATACGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459703 synonymous SNV . 0 21 hm5C_associated_SNPs_253 1 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_253 DeepMRMD:1;iRNA_m5C:1 Hereditary pancreatitis Hereditary pancreatitis 254 chr7 142459841 142459841 1 + C A rs141847266 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACGAAGTGACTCATCTCTGGCTGGGGCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459841 stopgain 0.095 1 21 hm5C_associated_SNPs_254 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_254 DeepMRMD:1;iRNA_m5C:1 255 chr7 149007286 149007286 1 + C A rs112067002 149007286 + 149007266 149007306 41 AACATAATGGCAGCAGGGGGCATAGCTCAGTGGTAGAGCAT AACATAATGGCAGCAGGGGGAATAGCTCAGTGGTAGAGCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC155060;ZNF777 ENSG00000244560;ENSG00000231397 intergenic Human other chr7:149007286 chr7:149007286 . . 0 21 hm5C_associated_SNPs_255 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_255 DeepMRMD:1;iRNA_m5C:1 256 chr7 149404827 149404827 1 + C A rs73725557 149404827 + 149404807 149404847 41 CCTGGTTCAAATCCAGGTGCCCCCTGCTGTGTTCTTATTTT CCTGGTTCAAATCCAGGTGCACCCTGCTGTGTTCTTATTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF767P;KRBA1 ENSG00000133624;ENSG00000133619 intergenic Human other chr7:149404827 chr7:149404827 . . 0 21 hm5C_associated_SNPs_256 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_256 DeepMRMD:1;iRNA_m5C:1 257 chr7 150028118 150028118 1 + C A rs140450745 150028118 + 150028098 150028138 41 AGAATGAGACCGTTGGAGCCCAGGATGACCCCCTGGCTTAC AGAATGAGACCGTTGGAGCCAAGGATGACCCCCTGGCTTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBED6CL ENSG00000188707 CDS Human protein_coding chr7:150028118 chr7:150028118 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_257 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_257 DeepMRMD:1;iRNA_m5C:1 258 chr7 156931872 156931872 1 + C A rs551763590 156931872 + 156931852 156931892 41 CCTCGCTGCCCCGGGCCGGGCGGGCGGGCGCCGAGAGCCTC CCTCGCTGCCCCGGGCCGGGAGGGCGGGCGCCGAGAGCCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931872 chr7:156931872 . . 0 21 hm5C_associated_SNPs_258 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_258 DeepMRMD:1;iRNA_m5C:1 259 chr8 26223857 26223857 1 + C T rs34109536 26223857 + 26223837 26223877 41 GAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGA GAATACCTCAGAAGTAAACTTTGTTCACTGTATGAAAATGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223857 chr8:26223857 synonymous SNV . 0 21 hm5C_associated_SNPs_259 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_259 DeepMRMD:1;iRNA_m5C:1 260 chr8 42878102 42878102 1 + C T rs369108834 42878102 + 42878082 42878122 41 GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAG GCTCACGCCTGTAATCCCAGTACTTTGGGAGGCCAAGGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42878102 chr8:42878102 . . 0 21 hm5C_associated_SNPs_260 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_260 DeepMRMD:1;iRNA_m5C:1 261 chr8 59504837 59504837 1 + C A rs146029974 59504837 + 59504817 59504857 41 AGGATTTGGTGCTCTCACTGCAGCAGCCTGGGTTCATTTCT AGGATTTGGTGCTCTCACTGAAGCAGCCTGGGTTCATTTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NSMAF ENSG00000035681 intronic Human protein_coding chr8:59504837 chr8:59504837 . . 0 21 hm5C_associated_SNPs_261 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_261 DeepMRMD:1;iRNA_m5C:1 262 chr8 74893419 74893419 1 + C G rs61732273 74893419 + 74893399 74893439 41 GTTTCTCTTATTCTACGAGTCTGATTGGCCTTACATTTCTG GTTTCTCTTATTCTACGAGTGTGATTGGCCTTACATTTCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM70 ENSG00000175606 CDS Human protein_coding chr8:74893419 chr8:74893419 nonsynonymous SNV 0.313 0 21 hm5C_associated_SNPs_262 2 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_262 DeepMRMD:1;iRNA_m5C:1 not specified not specified 263 chr8 95804616 95804616 1 + C T rs181895243 95804616 + 95804596 95804636 41 CTCCGGAGTAGCTGGGATTACAGGCACCTGCCACCAAGCAC CTCCGGAGTAGCTGGGATTATAGGCACCTGCCACCAAGCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DPY19L4 ENSG00000254307 ncRNA_intronic Human antisense chr8:95804616 chr8:95804616 . . 0 21 hm5C_associated_SNPs_263 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_263 DeepMRMD:1;iRNA_m5C:1 264 chr8 101199471 101199471 1 + C T rs150007121 101199471 + 101199451 101199491 41 TTGGAGTTAGAACCTGGAAACGTAAAGGGTAAAAAATATTA TTGGAGTTAGAACCTGGAAATGTAAAGGGTAAAAAATATTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101199471 chr8:101199471 synonymous SNV . 0 21 hm5C_associated_SNPs_264 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_264 DeepMRMD:1;iRNA_m5C:1 265 chr8 104427354 104427354 1 + C A rs146475888 104427354 + 104427334 104427374 41 CTGAGGGGGCAAGAACGGGGCACAGACACTACGTCACGCCG CTGAGGGGGCAAGAACGGGGAACAGACACTACGTCACGCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104427354 chr8:104427354 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_265 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_265 DeepMRMD:1;iRNA_m5C:1 266 chr8 145166334 145166334 1 + C A rs143098563 145166334 + 145166314 145166354 41 TGTCCCTGTTTGCAGCGAGGCCTTGTCTCTCATCCATCGTC TGTCCCTGTTTGCAGCGAGGACTTGTCTCTCATCCATCGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166334 chr8:145166334 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_266 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_266 DeepMRMD:1;iRNA_m5C:1 267 chr8 145169204 145169204 1 + C T rs528202886 145169204 + 145169184 145169224 41 TACCCGGAGGCGGGCACGATCGAGGGCCTGGCCTCGCTGTT TACCCGGAGGCGGGCACGATTGAGGGCCTGGCCTCGCTGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145169204 chr8:145169204 synonymous SNV . 0 21 hm5C_associated_SNPs_267 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_267 DeepMRMD:1;iRNA_m5C:1 268 chr8 145736472 145736472 1 + C T rs144273718 145736472 + 145736452 145736492 41 GATGGGTTGGGGCCACATCCCTGCTTCTTGCTCCTGCTCAT GATGGGTTGGGGCCACATCCTTGCTTCTTGCTCCTGCTCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736472 chr8:145736472 synonymous SNV . 0 21 hm5C_associated_SNPs_268 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_268 DeepMRMD:1;iRNA_m5C:1 269 chr9 4490513 4490513 1 + C A rs12000219 4490513 + 4490493 4490533 41 GCGGGCGCGGTGCGCGATCCCGGGTGGCGGCGGCAACGGCG GCGGGCGCGGTGCGCGATCCAGGGTGGCGGCGGCAACGGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC1A1 ENSG00000106688 UTR5 Human protein_coding chr9:4490513 chr9:4490513 . . 0 21 hm5C_associated_SNPs_269 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_269 DeepMRMD:1;iRNA_m5C:1 270 chr9 6413403 6413403 1 + C T rs548460330 6413403 + 6413383 6413423 41 CTGCCGCTGAGGGCCCGAGCCGCAGGGAAAGCGGCGCGGGC CTGCCGCTGAGGGCCCGAGCTGCAGGGAAAGCGGCGCGGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UHRF2 ENSG00000147854 UTR5 Human protein_coding chr9:6413403 chr9:6413403 . . 0 21 hm5C_associated_SNPs_270 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_270 DeepMRMD:1;iRNA_m5C:1 271 chr9 7174666 7174666 1 + C T rs145856633 7174666 + 7174646 7174686 41 TTTAAGAATGAATATGTGGCCGACCCTGTATACCGCACTTT TTTAAGAATGAATATGTGGCTGACCCTGTATACCGCACTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4C ENSG00000107077 CDS Human protein_coding chr9:7174666 chr9:7174666 synonymous SNV . 0 21 hm5C_associated_SNPs_271 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_271 DeepMRMD:1;iRNA_m5C:1 272 chr9 20923667 20923667 1 + C A rs200166806 20923667 + 20923647 20923687 41 CCTTTTGAACAGGGAGAGTCCGGTAGTGAAAGGCAATGCGC CCTTTTGAACAGGGAGAGTCAGGTAGTGAAAGGCAATGCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20923667 chr9:20923667 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_272 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_272 DeepMRMD:1;iRNA_m5C:1 273 chr9 36163570 36163570 1 + C A rs11281 36163570 + 36163550 36163590 41 GCCCAAATGTTCCGGGGAGGCGGCCGGGGCAGGGGGCTTAG GCCCAAATGTTCCGGGGAGGAGGCCGGGGCAGGGGGCTTAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GLIPR2 ENSG00000122694 UTR3 Human protein_coding chr9:36163570 chr9:36163570 . . 0 21 hm5C_associated_SNPs_273 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_273 DeepMRMD:1;iRNA_m5C:1 274 chr9 96278291 96278291 1 + C T rs200536689 96278291 + 96278271 96278311 41 CAGGTGCCCAGCCCAGGGGGCGCCCCGGGCCAGGGTCCATA CAGGTGCCCAGCCCAGGGGGTGCCCCGGGCCAGGGTCCATA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM120A ENSG00000048828 CDS Human protein_coding chr9:96278291 chr9:96278291 synonymous SNV . 0 21 hm5C_associated_SNPs_274 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_274 DeepMRMD:1;iRNA_m5C:1 275 chr9 100128003 100128003 1 + C G rs148165882 100128003 + 100127983 100128023 41 CTCTGGGAGAGCAGTGAGAACCTGCTGACAGTCGCAGAGGT CTCTGGGAGAGCAGTGAGAAGCTGCTGACAGTCGCAGAGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100128003 chr9:100128003 nonsynonymous SNV 0.074 0 21 hm5C_associated_SNPs_275 0 0 0 1 2 chromatin 1 0 1 1 hm5C_site_275 DeepMRMD:1;iRNA_m5C:1 276 chr9 100773572 100773572 1 + C T rs553733827 100773572 + 100773552 100773592 41 GAAGGAGAAGATGAGGAAGACGAGGACGATGAGGATGGTGA GAAGGAGAAGATGAGGAAGATGAGGACGATGAGGATGGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773572 chr9:100773572 synonymous SNV . 0 21 hm5C_associated_SNPs_276 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_276 DeepMRMD:1;iRNA_m5C:1 277 chr9 100773578 100773578 1 + C T rs35618988 100773578 + 100773558 100773598 41 GAAGATGAGGAAGACGAGGACGATGAGGATGGTGAAGAAGA GAAGATGAGGAAGACGAGGATGATGAGGATGGTGAAGAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773578 chr9:100773578 synonymous SNV . 0 21 hm5C_associated_SNPs_277 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_277 DeepMRMD:1;iRNA_m5C:1 278 chr9 103002451 103002451 1 + C T rs2491097 103002451 + 103002431 103002471 41 CGTGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAA CGTGGTTGATGTCTTGACCTTATATGAAAGCTGCAATATAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103002451 chr9:103002451 nonsynonymous SNV 0.982 3 21 hm5C_associated_SNPs_278 2 0 1 0 1 chromatin 1 0 1 1 hm5C_site_278 DeepMRMD:1;iRNA_m5C:1 not specified not specified 279 chr9 103189607 103189607 1 + C T rs563275299 103189607 + 103189587 103189627 41 CCCTGCTTGCGAGAGGAGCCCAGGCCGCCCGCCCTCGCGCC CCCTGCTTGCGAGAGGAGCCTAGGCCGCCCGCCCTCGCGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSANTD3 ENSG00000066697 UTR5 Human protein_coding chr9:103189607 chr9:103189607 . . 0 21 hm5C_associated_SNPs_279 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_279 DeepMRMD:1;iRNA_m5C:1 280 chr9 117092203 117092203 1 + C T rs143336597 117092203 + 117092183 117092223 41 GTATGGCGCTGTCCTGGGTTCTTACAGTCCTGAGCCTCCTA GTATGGCGCTGTCCTGGGTTTTTACAGTCCTGAGCCTCCTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ORM2 ENSG00000228278 CDS Human protein_coding chr9:117092203 chr9:117092203 nonsynonymous SNV 0.006 2 21 hm5C_associated_SNPs_280 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_280 DeepMRMD:1;iRNA_m5C:1 281 chr9 131085127 131085127 1 + C A rs368877538 131085127 + 131085107 131085147 41 ACCCGCCCATCCTCCGCGGACGCCCGCTGCCATGGCGACTC ACCCGCCCATCCTCCGCGGAAGCCCGCTGCCATGGCGACTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COQ4 ENSG00000167113 UTR5 Human protein_coding chr9:131085127 chr9:131085127 . . 0 21 hm5C_associated_SNPs_281 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_281 DeepMRMD:1;iRNA_m5C:1 282 chr9 131193480 131193480 1 + C G rs59813556 131193480 + 131193460 131193500 41 AGCAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCCGGG AGCAGTGCCATCAGGAACCTGGGCGTAGACCTGCTCCCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131193480 chr9:131193480 synonymous SNV . 0 21 hm5C_associated_SNPs_282 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_282 DeepMRMD:1;iRNA_m5C:1 283 chr9 131769077 131769077 1 + C T rs371484037 131769077 + 131769057 131769097 41 ACCTCCTGTCACCCCCCTCCCGGAGTAGCCACGACTCCAGC ACCTCCTGTCACCCCCCTCCTGGAGTAGCCACGACTCCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP188 ENSG00000095319 UTR3 Human protein_coding chr9:131769077 chr9:131769077 . . 0 21 hm5C_associated_SNPs_283 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_283 DeepMRMD:1;iRNA_m5C:1 284 chr9 132265792 132265792 1 + C T rs146469064 132265792 + 132265772 132265812 41 TTCTGTAACTGGCTTCCTCTCGGCGGGCAGGCTCACACCCT TTCTGTAACTGGCTTCCTCTTGGCGGGCAGGCTCACACCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LINC00963 ENSG00000204054 ncRNA_exonic Human processed_transcript chr9:132265792 chr9:132265792 . . 0 21 hm5C_associated_SNPs_284 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_284 DeepMRMD:1;iRNA_m5C:1 285 chr9 132265871 132265871 1 + C T rs548617086 132265871 + 132265851 132265891 41 CCATTCCTCATGCAGGCCATCGATGGAAATGTCAGACAGTG CCATTCCTCATGCAGGCCATTGATGGAAATGTCAGACAGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control LINC00963 ENSG00000204054 ncRNA_exonic Human processed_transcript chr9:132265871 chr9:132265871 . . 0 21 hm5C_associated_SNPs_285 0 0 1 0 1 unknown 1 0 1 1 hm5C_site_285 DeepMRMD:1;iRNA_m5C:1 286 chr9 132898050 132898050 1 + C G rs12336580 132898050 + 132898030 132898070 41 CCCAGTGGTCTTCTTTCCAACAGGAAAAGAAGGCTGTGATG CCCAGTGGTCTTCTTTCCAAGAGGAAAAGAAGGCTGTGATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR107 ENSG00000148358 UTR3 Human protein_coding chr9:132898050 chr9:132898050 . . 0 21 hm5C_associated_SNPs_286 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_286 DeepMRMD:1;iRNA_m5C:1 287 chr9 133577577 133577577 1 + C G rs34120870 133577577 + 133577557 133577597 41 CTGGTGAAACGGCAGAAGACCCACTTTCATGATTTGCCATG CTGGTGAAACGGCAGAAGACGCACTTTCATGATTTGCCATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133577577 chr9:133577577 synonymous SNV . 0 21 hm5C_associated_SNPs_287 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_287 DeepMRMD:1;iRNA_m5C:1 288 chr9 135926282 135926282 1 + C T rs368903433 135926282 + 135926262 135926302 41 AGGATGAGGAGGTGCCCAAGCAGCCACTGGAGGCTGCAGCC AGGATGAGGAGGTGCCCAAGTAGCCACTGGAGGCTGCAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135926282 chr9:135926282 stopgain 0.003 0 21 hm5C_associated_SNPs_288 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_288 DeepMRMD:1;iRNA_m5C:1 289 chr9 135946626 135946626 1 + C G rs547508699 135946626 + 135946606 135946646 41 CCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGG CCCACGGGTGACTCCGAGACGGCCCCCGTGCCGCCCACGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946626 chr9:135946626 synonymous SNV . 0 21 hm5C_associated_SNPs_289 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_289 DeepMRMD:1;iRNA_m5C:1 290 chr9 135946995 135946995 1 + C A rs374403885 135946995 + 135946975 135947015 41 GGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGACTC GGTGACTCCGGGGCCCCCCCAGTGACCCCCACGGGTGACTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946995 chr9:135946995 synonymous SNV . 0 21 hm5C_associated_SNPs_290 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_290 DeepMRMD:1;iRNA_m5C:1 291 chr9 135947001 135947001 1 + C G rs550222823 135947001 + 135946981 135947021 41 TCCGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGAC TCCGGGGCCCCCCCCGTGACGCCCACGGGTGACTCCGAGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947001 chr9:135947001 synonymous SNV . 0 21 hm5C_associated_SNPs_291 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_291 DeepMRMD:1;iRNA_m5C:1 292 chr9 137024952 137024952 1 + C T rs536270237 137024952 + 137024932 137024972 41 TCAGTCTTGTTCTGGGGGGACGGCCCACTCCGGGGAGGGGG TCAGTCTTGTTCTGGGGGGATGGCCCACTCCGGGGAGGGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR5 ENSG00000196363 UTR3 Human protein_coding chr9:137024952 chr9:137024952 . . 0 21 hm5C_associated_SNPs_292 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_292 DeepMRMD:1;iRNA_m5C:1 293 chr9 140137636 140137636 1 + C T rs373363190 140137636 + 140137616 140137656 41 GTGTTCAGGGGCCGCATGTCCATGAAGGAGGTGGATGAGCA GTGTTCAGGGGCCGCATGTCTATGAAGGAGGTGGATGAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140137636 chr9:140137636 synonymous SNV . 0 21 hm5C_associated_SNPs_293 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_293 DeepMRMD:1;iRNA_m5C:1 294 chr9 140151380 140151380 1 + C T rs182592368 140151380 + 140151360 140151400 41 CAAGACAACCAGGCCCTCTTCGGGGACGAGGTTTCCCCACT CAAGACAACCAGGCCCTCTTTGGGGACGAGGTTTCCCCACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140151380 chr9:140151380 synonymous SNV . 0 21 hm5C_associated_SNPs_294 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_294 DeepMRMD:1;iRNA_m5C:1 295 chr10 17275861 17275861 1 + C T rs4903 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACGGCTGCCCTGCGTGATGTACGTCAGCAATATGAAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275861 synonymous SNV . 0 21 hm5C_associated_SNPs_295 0 0 1 1 2 Ribosome 1 0 1 1 hm5C_site_295 DeepMRMD:1;iRNA_m5C:1 296 chr10 43971248 43971248 1 + C G rs11816311 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCGGTACAGAGACATGATGCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971248 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_296 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_296 DeepMRMD:1;iRNA_m5C:1 297 chr10 75531699 75531699 1 + C T rs114029318 75531699 + 75531679 75531719 41 AGCTGGAGCGCCGTTCTCTCCTGCTGGGACACCGCTTGGGC AGCTGGAGCGCCGTTCTCTCTTGCTGGGACACCGCTTGGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC24C ENSG00000176986 UTR3 Human protein_coding chr10:75531699 chr10:75531699 . . 0 21 hm5C_associated_SNPs_297 0 0 1 1 0 Nucleus 1 0 1 1 hm5C_site_297 DeepMRMD:1;iRNA_m5C:1 298 chr10 79800374 79800374 1 + C G rs114512325 79800374 + 79800354 79800394 41 TCTTTCTCTTGATTCACAGCCGAAGGAGTAAAGGTGCTGCA TCTTTCTCTTGATTCACAGCGGAAGGAGTAAAGGTGCTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79800374 chr10:79800374 nonsynonymous SNV 0.023 1 21 hm5C_associated_SNPs_298 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_298 DeepMRMD:1;iRNA_m5C:1 299 chr10 81075062 81075062 1 + C T rs117137195 81075062 + 81075042 81075082 41 GAGGGAGGTGCAGAGGCATCCGGGGCGGGAGCAAGCCCCAG GAGGGAGGTGCAGAGGCATCTGGGGCGGGAGCAAGCCCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZMIZ1 ENSG00000108175 UTR3 Human protein_coding chr10:81075062 chr10:81075062 . . 0 21 hm5C_associated_SNPs_299 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_299 DeepMRMD:1;iRNA_m5C:1 300 chr10 93751991 93751991 1 + C T rs151057472 93751991 + 93751971 93752011 41 ACAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTCA ACAAGTAGGCGAGGTCCTACTCCCAAAGCAGTAAAAGCTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93751991 chr10:93751991 synonymous SNV . 0 21 hm5C_associated_SNPs_300 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_300 DeepMRMD:1;iRNA_m5C:1 301 chr10 95262980 95262980 1 + C T rs62642530 95262980 + 95262960 95263000 41 AAGGCCAGATATAGTACTACCACATTGCTTGAACAGCTGGA AAGGCCAGATATAGTACTACTACATTGCTTGAACAGCTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262980 chr10:95262980 synonymous SNV . 0 21 hm5C_associated_SNPs_301 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_301 DeepMRMD:1;iRNA_m5C:1 302 chr10 99382326 99382326 1 + C G rs45628739 99382326 + 99382306 99382346 41 GCCGGGTGTGGTGGTGCGTTCCTGTAGTCCCAGCTACTTGG GCCGGGTGTGGTGGTGCGTTGCTGTAGTCCCAGCTACTTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MORN4 ENSG00000155252;ENSG00000171160;ENSG00000249967 intronic Human other chr10:99382326 chr10:99382326 . . 0 21 hm5C_associated_SNPs_302 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_302 DeepMRMD:1;iRNA_m5C:1 303 chr10 102124120 102124120 1 + C A rs541916361 102124120 + 102124100 102124140 41 CTATAAGGTGCCTCAGTTTTCCTTCTGTTAAAATGGGGATA CTATAAGGTGCCTCAGTTTTACTTCTGTTAAAATGGGGATA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCD ENSG00000099194 UTR3 Human protein_coding chr10:102124120 chr10:102124120 . . 0 21 hm5C_associated_SNPs_303 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_303 DeepMRMD:1;iRNA_m5C:1 304 chr10 104404285 104404285 1 + C A rs139837778 104404285 + 104404265 104404305 41 GGCCGGCTGGGGCCGGAGCTCGGGGCTCGGTGGGCCTACAG GGCCGGCTGGGGCCGGAGCTAGGGGCTCGGTGGGCCTACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TRIM8 ENSG00000171206 UTR5 Human protein_coding chr10:104404285 chr10:104404285 . . 0 21 hm5C_associated_SNPs_304 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_304 DeepMRMD:1;iRNA_m5C:1 305 chr10 108729824 108729824 1 + C T rs10884395 108729824 + 108729804 108729844 41 CGTCCGTTCTCGTCTGATCTCGGAAGCTAAGCACGGTCGGG CGTCCGTTCTCGTCTGATCTTGGAAGCTAAGCACGGTCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SORCS1 ENSG00000200626 ncRNA_exonic Human rRNA chr10:108729824 chr10:108729824 . . 0 21 hm5C_associated_SNPs_305 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_305 DeepMRMD:1;iRNA_m5C:1 306 chr10 112631685 112631685 1 + C G rs116602666 112631685 + 112631665 112631705 41 ACAAACAGAGCGAGAAGGGCCAGAGACTCTCCGAGGCGGCG ACAAACAGAGCGAGAAGGGCGAGAGACTCTCCGAGGCGGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD4 ENSG00000203497 ncRNA_intronic Human antisense chr10:112631685 chr10:112631685 . . 0 21 hm5C_associated_SNPs_306 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_306 DeepMRMD:1;iRNA_m5C:1 307 chr10 118314919 118314919 1 + C T rs112464025 118314919 + 118314899 118314939 41 GGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTT GGGTTTGGAATGAGCCAAGTTGTGGGCCACCTAGATTTCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314919 chr10:118314919 synonymous SNV . 0 21 hm5C_associated_SNPs_307 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_307 DeepMRMD:1;iRNA_m5C:1 308 chr10 127452092 127452092 1 + C T rs140023483 127452092 + 127452072 127452112 41 CAGTGCCTTCAACACGGAGCCGGTTTGTTCATTCGGTGCTT CAGTGCCTTCAACACGGAGCTGGTTTGTTCATTCGGTGCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EDRF1 ENSG00000107938 UTR3 Human protein_coding chr10:127452092 chr10:127452092 . . 0 21 hm5C_associated_SNPs_308 0 0 0 1 1 Cytosol 1 0 1 1 hm5C_site_308 DeepMRMD:1;iRNA_m5C:1 309 chr11 289651 289651 1 + C T rs115270978 289651 + 289631 289671 41 CGAGCTCCTTTCCTGCGAGGCCCCGTCTAGGAGGGGCCTCA CGAGCTCCTTTCCTGCGAGGTCCCGTCTAGGAGGGGCCTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PGGHG ENSG00000142102 UTR5 Human protein_coding chr11:289651 chr11:289651 . . 0 21 hm5C_associated_SNPs_309 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_309 DeepMRMD:1;iRNA_m5C:1 310 chr11 289668 289668 1 + C G rs112058263 289668 + 289648 289688 41 AGGCCCCGTCTAGGAGGGGCCTCAGGAAAATCGGGGCTGCC AGGCCCCGTCTAGGAGGGGCGTCAGGAAAATCGGGGCTGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PGGHG ENSG00000142102 UTR5 Human protein_coding chr11:289668 chr11:289668 . . 0 21 hm5C_associated_SNPs_310 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_310 DeepMRMD:1;iRNA_m5C:1 311 chr11 823809 823809 1 + C A rs1135628 823809 + 823789 823829 41 GAGGATTACTCGCAGCTGCCCGGAGAAGATCACATCCTGGA GAGGATTACTCGCAGCTGCCAGGAGAAGATCACATCCTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA2 ENSG00000177666 CDS Human protein_coding chr11:823809 chr11:823809 synonymous SNV . 0 21 hm5C_associated_SNPs_311 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_311 DeepMRMD:1;iRNA_m5C:1 312 chr11 3846713 3846713 1 + C T rs371208237 3846713 + 3846693 3846733 41 TTCAGTCCTGCTTGGGAGGACGCAGCCCACTGCCCAGAAAC TTCAGTCCTGCTTGGGAGGATGCAGCCCACTGCCCAGAAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PGAP2 ENSG00000148985 UTR3 Human protein_coding chr11:3846713 chr11:3846713 . . 0 21 hm5C_associated_SNPs_312 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_312 DeepMRMD:1;iRNA_m5C:1 313 chr11 8707082 8707082 1 + C T rs372448230 8707082 + 8707062 8707102 41 GATTCACTGGTGGGGGCAGTCGGTGCCCCCGTTAGTGCCCA GATTCACTGGTGGGGGCAGTTGGTGCCCCCGTTAGTGCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707082 chr11:8707082 . . 0 21 hm5C_associated_SNPs_313 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_313 DeepMRMD:1;iRNA_m5C:1 314 chr11 9595768 9595768 1 + C T rs117347074 9595768 + 9595748 9595788 41 GAGGAGGACCTGTTGCTGCCCGGCGCCTGCCCGGGCGCGGA GAGGAGGACCTGTTGCTGCCTGGCGCCTGCCCGGGCGCGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WEE1 ENSG00000166483 CDS Human protein_coding chr11:9595768 chr11:9595768 synonymous SNV . 0 21 hm5C_associated_SNPs_314 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_314 DeepMRMD:1;iRNA_m5C:1 315 chr11 12183673 12183673 1 + C A rs188548541 12183673 + 12183653 12183693 41 CTGTTCACCTGTGTCCTCGCCGCACCACTGCCGCACACGAC CTGTTCACCTGTGTCCTCGCAGCACCACTGCCGCACACGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MICAL2 ENSG00000133816 UTR5 Human protein_coding chr11:12183673 chr11:12183673 . . 0 21 hm5C_associated_SNPs_315 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_315 DeepMRMD:1;iRNA_m5C:1 316 chr11 17393604 17393604 1 + C G rs557428928 17393604 + 17393584 17393624 41 CTCTCAAGTGCATTCTGAAACACTGGAACTCCTTTGACACT CTCTCAAGTGCATTCTGAAAGACTGGAACTCCTTTGACACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NCR3LG1 ENSG00000188211 CDS Human protein_coding chr11:17393604 chr11:17393604 nonsynonymous SNV 0.752 1 21 hm5C_associated_SNPs_316 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_316 DeepMRMD:1;iRNA_m5C:1 317 chr11 34969150 34969150 1 + C T rs34582941 34969150 + 34969130 34969170 41 GATGGAATCTTGGCCAAAATCGTGGTAAGTTTTTATTTTAA GATGGAATCTTGGCCAAAATTGTGGTAAGTTTTTATTTTAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969150 chr11:34969150 synonymous SNV . 0 21 hm5C_associated_SNPs_317 2 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_317 DeepMRMD:1;iRNA_m5C:1 not specified not specified 318 chr11 35251376 35251376 1 + C G rs78006686 35251376 + 35251356 35251396 41 ACATCTTCAACAGACCCCCTCTAGAAATTTTTCAGATGCTT ACATCTTCAACAGACCCCCTGTAGAAATTTTTCAGATGCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CD44 ENSG00000026508 UTR3 Human protein_coding chr11:35251376 chr11:35251376 . . 0 21 hm5C_associated_SNPs_318 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_318 DeepMRMD:1;iRNA_m5C:1 319 chr11 35828455 35828455 1 + C T rs182988466 35828455 + 35828435 35828475 41 ATTTGTGAAAATTGTGGTGCCATGAATTAAGATGGATGACT ATTTGTGAAAATTGTGGTGCTATGAATTAAGATGGATGACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM44 ENSG00000166326 UTR3 Human protein_coding chr11:35828455 chr11:35828455 . . 0 21 hm5C_associated_SNPs_319 0 0 1 1 0 Ribosome 1 0 1 1 hm5C_site_319 DeepMRMD:1;iRNA_m5C:1 320 chr11 46695365 46695365 1 + C T rs114393370 46695365 + 46695345 46695385 41 TCTACTCCATTCCTCCTGGCCCACCTGGGGCATTCACTGGC TCTACTCCATTCCTCCTGGCTCACCTGGGGCATTCACTGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATG13 ENSG00000175224 UTR3 Human protein_coding chr11:46695365 chr11:46695365 . . 0 21 hm5C_associated_SNPs_320 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_320 DeepMRMD:1;iRNA_m5C:1 321 chr11 47587171 47587171 1 + C G rs576084961 47587171 + 47587151 47587191 41 GGGTCGCCGCTGCGCCGGGCCGGGATGGCGGCCACCGCGCT GGGTCGCCGCTGCGCCGGGCGGGGATGGCGGCCACCGCGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPMT1 ENSG00000110536 UTR5 Human protein_coding chr11:47587171 chr11:47587171 . . 0 21 hm5C_associated_SNPs_321 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_321 DeepMRMD:1;iRNA_m5C:1 322 chr11 59323950 59323950 1 + C G rs7924849 59323950 + 59323930 59323970 41 AGACTTTTAATCTGAGGGTCCGGGGTTCAAGTCCCTGTTCG AGACTTTTAATCTGAGGGTCGGGGGTTCAAGTCCCTGTTCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323950 chr11:59323950 . . 0 21 hm5C_associated_SNPs_322 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_322 DeepMRMD:1;iRNA_m5C:1 323 chr11 60699530 60699530 1 + C A rs180839936 60699530 + 60699510 60699550 41 GTGCGCCTTGTCACTGTGGACGGCGGGGGGGCCTTGGTGGA GTGCGCCTTGTCACTGTGGAAGGCGGGGGGGCCTTGGTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699530 chr11:60699530 nonsynonymous SNV 0.089 0 21 hm5C_associated_SNPs_323 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_323 DeepMRMD:1;iRNA_m5C:1 324 chr11 61111346 61111346 1 + C G rs35723406 61111346 + 61111326 61111366 41 AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGGCTG AGATGCTGAAACCACTGCAGGAGCCTGGCCTAACGTGGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61111346 chr11:61111346 nonsynonymous SNV 0.688 1 21 hm5C_associated_SNPs_324 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_324 DeepMRMD:1;iRNA_m5C:1 325 chr11 61252163 61252163 1 + C T rs373143089 61252163 + 61252143 61252183 41 GCCCTTCTTCCTCCCAGGTCCGGAAGGTCCATTTCGACACC GCCCTTCTTCCTCCCAGGTCTGGAAGGTCCATTTCGACACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252163 chr11:61252163 nonsynonymous SNV 0.968 2 21 hm5C_associated_SNPs_325 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_325 DeepMRMD:1;iRNA_m5C:1 326 chr11 63971624 63971624 1 + C G rs201396024 63971624 + 63971604 63971644 41 TGTTCATCCCCCCTTCCCTTCGCCCTCATGTGGAAAGAGGA TGTTCATCCCCCCTTCCCTTGGCCCTCATGTGGAAAGAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STIP1 ENSG00000168439 UTR3 Human protein_coding chr11:63971624 chr11:63971624 . . 0 21 hm5C_associated_SNPs_326 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_326 DeepMRMD:1;iRNA_m5C:1 327 chr11 64084114 64084114 1 + C T rs572460127 64084114 + 64084094 64084134 41 CCAGGGCCCAGAGCCCTTGACTGTACAGAGACTCTATTTTA CCAGGGCCCAGAGCCCTTGATTGTACAGAGACTCTATTTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESRRA;TRMT112 ENSG00000173113;ENSG00000173153 UTR3 Human other chr11:64084114 chr11:64084114 . . 0 21 hm5C_associated_SNPs_327 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_327 DeepMRMD:1;iRNA_m5C:1 328 chr11 64693088 64693088 1 + C G rs563266633 64693088 + 64693068 64693108 41 GCCCAGGACTGTGGTTGTGCCCCCCCCCCAAAGGCCGGACA GCCCAGGACTGTGGTTGTGCGCCCCCCCCAAAGGCCGGACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R5B ENSG00000068971 UTR5 Human protein_coding chr11:64693088 chr11:64693088 . . 0 21 hm5C_associated_SNPs_328 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_328 DeepMRMD:1;iRNA_m5C:1 329 chr11 65190887 65190887 1 + C A rs79376422 65190887 + 65190867 65190907 41 CGCTCGGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGT CGCTCGGCCTGGGACGGGGCACAGGCCGGGCCCAGCCTGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190887 chr11:65190887 . . 0 21 hm5C_associated_SNPs_329 0 0 1 1 0 unknown 1 0 1 1 hm5C_site_329 DeepMRMD:1;iRNA_m5C:1 330 chr11 65198182 65198182 1 + C A rs78025628 65198182 + 65198162 65198202 41 ATTTAGTGTACACATGTATCCCCTGGAGTGGCATTGCCTCG ATTTAGTGTACACATGTATCACCTGGAGTGGCATTGCCTCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65198182 chr11:65198182 . . 0 21 hm5C_associated_SNPs_330 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_330 DeepMRMD:1;iRNA_m5C:1 331 chr11 65267331 65267331 1 + C A rs187923588 65267331 + 65267311 65267351 41 AGAAAATTGGAAGATAGAAACAAGATAGAAAATGAAAATAT AGAAAATTGGAAGATAGAAAAAAGATAGAAAATGAAAATAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267331 chr11:65267331 . . 0 21 hm5C_associated_SNPs_331 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_331 DeepMRMD:1;iRNA_m5C:1 332 chr11 65338930 65338930 1 + C A rs538598804 65338930 + 65338910 65338950 41 CCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGCGCCC CCTCAGCCTCAGAGCTCCCCATGGGCTCTCGACCTGCGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338930 chr11:65338930 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_332 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_332 DeepMRMD:1;iRNA_m5C:1 333 chr11 65658714 65658714 1 + C G rs148802656 65658714 + 65658694 65658734 41 AATGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGGGGGATCA AATGGGGCCCCCGCGGCGGCGCCAGCGGCGCCGGGGGATCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658714 chr11:65658714 nonsynonymous SNV 0.640 0 21 hm5C_associated_SNPs_333 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_333 DeepMRMD:1;iRNA_m5C:1 334 chr11 74329609 74329609 1 + C A rs148419916 74329609 + 74329589 74329629 41 GCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTGA GCTATACAATGTGCAGCTGCAGTCCCTAGAGCTCCTGCTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329609 chr11:74329609 synonymous SNV . 0 21 hm5C_associated_SNPs_334 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_334 DeepMRMD:1;iRNA_m5C:1 335 chr11 75110575 75110575 1 + C G rs17881757 75110575 + 75110555 75110595 41 GCCACTTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGG GCCACTTCCTTTCCTTTCAGGGGAGCGCGGCGGCAAGATGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110575 chr11:75110575 . . 0 21 hm5C_associated_SNPs_335 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_335 DeepMRMD:1;iRNA_m5C:1 336 chr11 75280006 75280006 1 + C T rs61733248 75280006 + 75279986 75280026 41 CTCTACAACTACTACGACGACGAGAAGGAAAAGCTGCAAAT CTCTACAACTACTACGACGATGAGAAGGAAAAGCTGCAAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75280006 chr11:75280006 synonymous SNV . 0 21 hm5C_associated_SNPs_336 2 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_336 DeepMRMD:1;iRNA_m5C:1 not specified not specified 337 chr11 108237839 108237839 1 + C T rs227091 108237839 + 108237819 108237859 41 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGC ATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108237839 chr11:108237839 . . 0 21 hm5C_associated_SNPs_337 1 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_337 DeepMRMD:1;iRNA_m5C:1 Ataxia-telangiectasia syndrome Ataxia-telangiectasia syndrome 338 chr11 117152351 117152351 1 + C T rs182447283 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGGAATGGAGCCAAGCTGAGCAGCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152351 synonymous SNV . 0 21 hm5C_associated_SNPs_338 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_338 DeepMRMD:1;iRNA_m5C:1 339 chr11 118307316 118307316 1 + C G rs9332745 118307316 + 118307296 118307336 41 GCGCCGGGGCCTAGGGGGCGCCCCGCGGCAACGCGTCCCGG GCGCCGGGGCCTAGGGGGCGGCCCGCGGCAACGCGTCCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2A ENSG00000118058 CDS Human protein_coding chr11:118307316 chr11:118307316 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_339 2 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_339 DeepMRMD:1;iRNA_m5C:1 not specified not specified 340 chr11 118307385 118307385 1 + C T rs9332747 118307385 + 118307365 118307405 41 CGGCGGTGGCGGCCCCGGGGCGCCCCCCTCCCCCCCGGCTG CGGCGGTGGCGGCCCCGGGGTGCCCCCCTCCCCCCCGGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118307385 chr11:118307385 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_340 1 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_340 DeepMRMD:1;iRNA_m5C:1 not specified not specified 341 chr11 118955679 118955679 1 + C T rs589925 118955679 + 118955659 118955699 41 GGTACTCGCCGGCCGGAGCCCCCGGCTTCCCGGGGCCGGGG GGTACTCGCCGGCCGGAGCCTCCGGCTTCCCGGGGCCGGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMBS ENSG00000256269 UTR5 Human protein_coding chr11:118955679 chr11:118955679 . . 0 21 hm5C_associated_SNPs_341 1 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_341 DeepMRMD:1;iRNA_m5C:1 Acute intermittent porphyria Acute intermittent porphyria 342 chr11 121323176 121323176 1 + C G rs200826396 121323176 + 121323156 121323196 41 GCGCGCCCTTGCCCCAGGACCGGGGCTTCCTCGTGGTGCAG GCGCGCCCTTGCCCCAGGACGGGGGCTTCCTCGTGGTGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SORL1 ENSG00000137642 CDS Human protein_coding chr11:121323176 chr11:121323176 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_342 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_342 DeepMRMD:1;iRNA_m5C:1 343 chr11 125439445 125439445 1 + C T rs569757100 125439445 + 125439425 125439465 41 CGGTGGGCTAGGGGCAGGGCCGGAGCCGCGGCGGCGGAGCT CGGTGGGCTAGGGGCAGGGCTGGAGCCGCGGCGGCGGAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EI24 ENSG00000149547 UTR5 Human protein_coding chr11:125439445 chr11:125439445 . . 0 21 hm5C_associated_SNPs_343 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_343 DeepMRMD:1;iRNA_m5C:1 344 chr11 134094791 134094791 1 + C A rs562136526 134094791 + 134094771 134094811 41 CTCCTCGGTGCATTGCTGCTCGGGCGCCGCAGCCCGCAGCC CTCCTCGGTGCATTGCTGCTAGGGCGCCGCAGCCCGCAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS26B ENSG00000151502 UTR5 Human protein_coding chr11:134094791 chr11:134094791 . . 0 21 hm5C_associated_SNPs_344 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_344 DeepMRMD:1;iRNA_m5C:1 345 chr12 6643991 6643991 1 + C G rs1136666 6643991 + 6643971 6644011 41 CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGA CGCAGCCGAGCCACATCGCTGAGACACCATGGGGAAGGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643991 chr12:6643991 . . 0 21 hm5C_associated_SNPs_345 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_345 DeepMRMD:1;iRNA_m5C:1 346 chr12 6647018 6647018 1 + C T rs528329572 6647018 + 6646998 6647038 41 CAAGAAGGTGGTGAAGCAGGCGTCGGAGGGCCCCCTCAAGG CAAGAAGGTGGTGAAGCAGGTGTCGGAGGGCCCCCTCAAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647018 chr12:6647018 nonsynonymous SNV 0.126 1 21 hm5C_associated_SNPs_346 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_346 DeepMRMD:1;iRNA_m5C:1 347 chr12 6647448 6647448 1 + C A rs141846451 6647448 + 6647428 6647468 41 CACTGAATCTCCCCTCCTCACAGTTGCCATGTAGACCCCTT CACTGAATCTCCCCTCCTCAAAGTTGCCATGTAGACCCCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647448 chr12:6647448 . . 0 21 hm5C_associated_SNPs_347 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_347 DeepMRMD:1;iRNA_m5C:1 348 chr12 6939910 6939910 1 + C T rs376887368 6939910 + 6939890 6939930 41 TCCTTCCCAACCAGCTGAGGCGGCTACATGAGGCCCATGCT TCCTTCCCAACCAGCTGAGGTGGCTACATGAGGCCCATGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6939910 chr12:6939910 nonsynonymous SNV 0.897 1 21 hm5C_associated_SNPs_348 0 0 0 0 0 membrane 1 0 1 1 hm5C_site_348 DeepMRMD:1;iRNA_m5C:1 349 chr12 6976702 6976702 1 + C G rs181882616 6976702 + 6976682 6976722 41 GCCGCGACTGCGCGCAGACACTGACCTTCAGCGCCTCGGCT GCCGCGACTGCGCGCAGACAGTGACCTTCAGCGCCTCGGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6976702 chr12:6976702 nonsynonymous SNV 0.573 0 21 hm5C_associated_SNPs_349 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_349 DeepMRMD:1;iRNA_m5C:1 350 chr12 31255405 31255405 1 + C T rs77340729 31255405 + 31255385 31255425 41 GTGACAGGGGCCCTGCTCCTCTCTGTGGTTGGAGGAAAGAT GTGACAGGGGCCCTGCTCCTTTCTGTGGTTGGAGGAAAGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31255405 chr12:31255405 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_350 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_350 DeepMRMD:1;iRNA_m5C:1 351 chr12 38715285 38715285 1 + C T rs190383954 38715285 + 38715265 38715305 41 CTCTCGTAATGTTGGCCCCTCACAAAGCTTGGGAATGTTTT CTCTCGTAATGTTGGCCCCTTACAAAGCTTGGGAATGTTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALG10B ENSG00000175548 UTR3 Human protein_coding chr12:38715285 chr12:38715285 . . 0 21 hm5C_associated_SNPs_351 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_351 DeepMRMD:1;iRNA_m5C:1 352 chr12 52631312 52631312 1 + C T rs184504813 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAAGATGAAATTAACTACCGCACAGCTGCTGAGAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631312 nonsynonymous SNV 0.160 1 21 hm5C_associated_SNPs_352 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_352 DeepMRMD:1;iRNA_m5C:1 353 chr12 53648076 53648076 1 + C T rs530727266 53648076 + 53648056 53648096 41 GTGACTGTCCTGTGGTTTCTCCTGCCATTGCTTTGTGTTTG GTGACTGTCCTGTGGTTTCTTCTGCCATTGCTTTGTGTTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFSD5 ENSG00000182544 UTR3 Human protein_coding chr12:53648076 chr12:53648076 . . 0 21 hm5C_associated_SNPs_353 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_353 DeepMRMD:1;iRNA_m5C:1 354 chr12 54379670 54379670 1 + C T rs4564384 54379670 + 54379650 54379690 41 AAGTCCGACAGCCAGACCCCCAGCCCCAATGAAATCAAGAC AAGTCCGACAGCCAGACCCCTAGCCCCAATGAAATCAAGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HOXC10 ENSG00000180818;ENSG00000273049 CDS Human other chr12:54379670 chr12:54379670 synonymous SNV . 0 21 hm5C_associated_SNPs_354 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_354 DeepMRMD:1;iRNA_m5C:1 355 chr12 56346679 56346679 1 + C T rs142280329 56346679 + 56346659 56346699 41 TTAGGTGCTACAGCTAAAGTCATCACCGACCCTGATATCCT TTAGGTGCTACAGCTAAAGTTATCACCGACCCTGATATCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56346679 chr12:56346679 synonymous SNV . 0 21 hm5C_associated_SNPs_355 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_355 DeepMRMD:1;iRNA_m5C:1 356 chr12 56388307 56388307 1 + C T rs187146028 56388307 + 56388287 56388327 41 TAGTTTTCTTTTGTTTATTTCCCAGCTCATTTTTTTCTTCT TAGTTTTCTTTTGTTTATTTTCCAGCTCATTTTTTTCTTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5B ENSG00000255990 ncRNA_exonic Human other chr12:56388307 chr12:56388307 . . 0 21 hm5C_associated_SNPs_356 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_356 DeepMRMD:1;iRNA_m5C:1 357 chr12 56664231 56664231 1 + C T rs77131854 56664231 + 56664211 56664251 41 CTGTTTCTCCTCTCAATTTCCCAGAAATTGGGTTCTATGCT CTGTTTCTCCTCTCAATTTCTCAGAAATTGGGTTCTATGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COQ10A ENSG00000135469 UTR3 Human protein_coding chr12:56664231 chr12:56664231 . . 0 21 hm5C_associated_SNPs_357 0 0 1 1 0 chromatin 1 0 1 1 hm5C_site_357 DeepMRMD:1;iRNA_m5C:1 358 chr12 57619359 57619359 1 + C T rs17854829 57619359 + 57619339 57619379 41 CACCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCAC CACCGACCGTGCCTGTACGATCCGTCGCAGGTGTGCTTCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619359 chr12:57619359 synonymous SNV . 0 21 hm5C_associated_SNPs_358 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_358 DeepMRMD:1;iRNA_m5C:1 359 chr12 57624701 57624701 1 + C G rs73338162 57624701 + 57624681 57624721 41 GACAGGCCAGGAGAGCCTGTCGGACAGTGATCCTGAGATGT GACAGGCCAGGAGAGCCTGTGGGACAGTGATCCTGAGATGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57624701 chr12:57624701 nonsynonymous SNV 0.761 1 21 hm5C_associated_SNPs_359 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_359 DeepMRMD:1;iRNA_m5C:1 360 chr12 64538767 64538767 1 + C T rs188383524 64538767 + 64538747 64538787 41 GATTACAGGCGCCACCACCACGCCCAGCTAATTTTTGTATT GATTACAGGCGCCACCACCATGCCCAGCTAATTTTTGTATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SRGAP1 ENSG00000196935 UTR3 Human protein_coding chr12:64538767 chr12:64538767 . . 0 21 hm5C_associated_SNPs_360 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_360 DeepMRMD:1;iRNA_m5C:1 361 chr12 72096321 72096321 1 + C T rs146291637 72096321 + 72096301 72096341 41 GGCTAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCC GGCTAGGCTGGTCTCGAACTTCTGACCTCAAGTGATCTGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM19 ENSG00000139291 UTR3 Human protein_coding chr12:72096321 chr12:72096321 . . 0 21 hm5C_associated_SNPs_361 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_361 DeepMRMD:1;iRNA_m5C:1 362 chr12 101780269 101780269 1 + C T rs3199856 101780269 + 101780249 101780289 41 CTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCCTGCTC CTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACCCTGCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780269 chr12:101780269 . . 0 21 hm5C_associated_SNPs_362 0 0 0 2 0 Cytosol 1 0 1 1 hm5C_site_362 DeepMRMD:1;iRNA_m5C:1 363 chr12 102091421 102091421 1 + C T rs11110965 102091421 + 102091401 102091441 41 CCCCTCCCCGAGGCCCCGCCCCACCCGCGAGCCGCAGCCGC CCCCTCCCCGAGGCCCCGCCTCACCCGCGAGCCGCAGCCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CHPT1 ENSG00000111666 UTR5 Human protein_coding chr12:102091421 chr12:102091421 . . 0 21 hm5C_associated_SNPs_363 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_363 DeepMRMD:1;iRNA_m5C:1 364 chr12 107713087 107713087 1 + C T rs377707357 107713087 + 107713067 107713107 41 GCCCGGCGGTCCCCGGCGGCCTGCCCAAGGACGCGCTGGCC GCCCGGCGGTCCCCGGCGGCTTGCCCAAGGACGCGCTGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BTBD11 ENSG00000151136 CDS Human protein_coding chr12:107713087 chr12:107713087 synonymous SNV . 0 21 hm5C_associated_SNPs_364 0 0 0 0 0 cytosol 1 0 1 1 hm5C_site_364 DeepMRMD:1;iRNA_m5C:1 365 chr12 111888006 111888006 1 + C A rs143381779 111888006 + 111887986 111888026 41 CAAAGTGCTGGGATTACAGGCGCGAGCCACCGCGCCCAGCC CAAAGTGCTGGGATTACAGGAGCGAGCCACCGCGCCCAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH2B3 ENSG00000111252 UTR3 Human protein_coding chr12:111888006 chr12:111888006 . . 0 21 hm5C_associated_SNPs_365 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_365 DeepMRMD:1;iRNA_m5C:1 366 chr12 112460375 112460375 1 + C T rs185294277 112460375 + 112460355 112460395 41 GAGAAGAACAAGATGAGTGACGGGAAGAAGGAGGAGCTCCA GAGAAGAACAAGATGAGTGATGGGAAGAAGGAGGAGCTCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ERP29 ENSG00000089248 CDS Human protein_coding chr12:112460375 chr12:112460375 synonymous SNV . 0 21 hm5C_associated_SNPs_366 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_366 DeepMRMD:1;iRNA_m5C:1 367 chr12 113867026 113867026 1 + C G rs61729438 113867026 + 113867006 113867046 41 CTGGGCATTCCTGCCACCATCGTGCTCCCCGAGAGCACCTC CTGGGCATTCCTGCCACCATGGTGCTCCCCGAGAGCACCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDSL ENSG00000139410 CDS Human protein_coding chr12:113867026 chr12:113867026 nonsynonymous SNV 0.874 5 21 hm5C_associated_SNPs_367 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_367 DeepMRMD:1;iRNA_m5C:1 368 chr12 120898045 120898045 1 + C A rs548201 120898045 + 120898025 120898065 41 TGGAAGACATTATTTATCTGCCTTTAACTCCCCCCAAAGGA TGGAAGACATTATTTATCTGACTTTAACTCCCCCCAAAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GATC ENSG00000257218 UTR3 Human protein_coding chr12:120898045 chr12:120898045 . . 0 21 hm5C_associated_SNPs_368 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_368 DeepMRMD:1;iRNA_m5C:1 369 chr12 122064537 122064537 1 + C T rs184479614 122064537 + 122064517 122064557 41 TCGACCTCGTCCTCCTCGTCCTGTGCGGCCGGCCGGGTGAG TCGACCTCGTCCTCCTCGTCTTGTGCGGCCGGCCGGGTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ORAI1 ENSG00000182500 UTR5 Human other chr12:122064537 chr12:122064537 . . 0 21 hm5C_associated_SNPs_369 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_369 DeepMRMD:1;iRNA_m5C:1 370 chr12 122627131 122627131 1 + C T rs139078759 122627131 + 122627111 122627151 41 GACTCAGCCCAGGGCCTTCTCGGATGTCACCTCACCGCTGT GACTCAGCCCAGGGCCTTCTTGGATGTCACCTCACCGCTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MLXIP ENSG00000175727 UTR3 Human protein_coding chr12:122627131 chr12:122627131 . . 0 21 hm5C_associated_SNPs_370 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_370 DeepMRMD:1;iRNA_m5C:1 371 chr12 123254202 123254202 1 + C A rs552159709 123254202 + 123254182 123254222 41 TAGGTGGGATTACAGGCGCCCGCCACCACGCCCAGCTAATT TAGGTGGGATTACAGGCGCCAGCCACCACGCCCAGCTAATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254202 chr12:123254202 . . 0 21 hm5C_associated_SNPs_371 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_371 DeepMRMD:1;iRNA_m5C:1 372 chr12 125424560 125424560 1 + C A rs184562645 125424560 + 125424540 125424580 41 GCTTTGCACGTATGAGGCCCCGGGTTCAATCCCCGGCATCT GCTTTGCACGTATGAGGCCCAGGGTTCAATCCCCGGCATCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424560 chr12:125424560 . . 0 21 hm5C_associated_SNPs_372 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_372 DeepMRMD:1;iRNA_m5C:1 373 chr12 125424566 125424566 1 + C T rs112048799 125424566 + 125424546 125424586 41 CACGTATGAGGCCCCGGGTTCAATCCCCGGCATCTCCAGAC CACGTATGAGGCCCCGGGTTTAATCCCCGGCATCTCCAGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424566 chr12:125424566 . . 0 21 hm5C_associated_SNPs_373 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_373 DeepMRMD:1;iRNA_m5C:1 374 chr12 132445592 132445592 1 + C T rs546918978 132445592 + 132445572 132445612 41 CACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAATG CACGCAGCCCAGTCCGGGGCTGGGGCAGGCCTTGCAGAATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132445592 chr12:132445592 nonsynonymous SNV 0.288 4 21 hm5C_associated_SNPs_374 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_374 DeepMRMD:1;iRNA_m5C:1 375 chr12 133298215 133298215 1 + C A rs11147017 133298215 + 133298195 133298235 41 ACGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAGTGGT ACGGAGTTTCACTCTTGTTGACCAGGCTGGAGTGCAGTGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PGAM5 ENSG00000247077 UTR3 Human protein_coding chr12:133298215 chr12:133298215 . . 0 21 hm5C_associated_SNPs_375 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_375 DeepMRMD:1;iRNA_m5C:1 376 chr12 133298217 133298217 1 + C G rs11147018 133298217 + 133298197 133298237 41 GGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAGTGGTGC GGAGTTTCACTCTTGTTGCCGAGGCTGGAGTGCAGTGGTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PGAM5 ENSG00000247077 UTR3 Human protein_coding chr12:133298217 chr12:133298217 . . 0 21 hm5C_associated_SNPs_376 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_376 DeepMRMD:1;iRNA_m5C:1 377 chr13 28494258 28494258 1 + C T rs193922351 28494258 + 28494238 28494278 41 GGCTCCCGGCTCCCGGTGCCCAATCCCGGGCCGCAGCCATG GGCTCCCGGCTCCCGGTGCCTAATCCCGGGCCGCAGCCATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDX1 ENSG00000247381 ncRNA_intronic Human antisense chr13:28494258 chr13:28494258 . . 0 21 hm5C_associated_SNPs_377 2 0 0 0 0 exosome 1 0 1 1 hm5C_site_377 DeepMRMD:1;iRNA_m5C:1 Maturity-onset diabetes of the young, type 4 Maturity-onset diabetes of the young, type 4 378 chr13 41950223 41950223 1 + C A rs558699124 41950223 + 41950203 41950243 41 ATCACCTGAGGTCAGGAGATCGAGATCAGCCTGGCCAACAT ATCACCTGAGGTCAGGAGATAGAGATCAGCCTGGCCAACAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAA16 ENSG00000172766 UTR3 Human protein_coding chr13:41950223 chr13:41950223 . . 0 21 hm5C_associated_SNPs_378 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_378 DeepMRMD:1;iRNA_m5C:1 379 chr13 96445995 96445995 1 + C A rs532697934 96445995 + 96445975 96446015 41 CAAAGTGTTGGGATTACAGGCGTGAGCCACTGCGCCTGGCC CAAAGTGTTGGGATTACAGGAGTGAGCCACTGCGCCTGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNAJC3 ENSG00000102580 UTR3 Human protein_coding chr13:96445995 chr13:96445995 . . 0 21 hm5C_associated_SNPs_379 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_379 DeepMRMD:1;iRNA_m5C:1 380 chr13 99858020 99858020 1 + C T rs371286261 99858020 + 99858000 99858040 41 ATTGATCGCCAGAGTTGATTCGGCTGATCTGGCTGGCTAGG ATTGATCGCCAGAGTTGATTTGGCTGATCTGGCTGGCTAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858020 chr13:99858020 . . 0 21 hm5C_associated_SNPs_380 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_380 DeepMRMD:1;iRNA_m5C:1 381 chr13 99858111 99858111 1 + C T rs137933235 99858111 + 99858091 99858131 41 GCGTGCTCGGTCGAAGAGGACGACCATCCCCGATAGAGGAG GCGTGCTCGGTCGAAGAGGATGACCATCCCCGATAGAGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858111 chr13:99858111 . . 0 21 hm5C_associated_SNPs_381 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_381 DeepMRMD:1;iRNA_m5C:1 382 chr13 99858156 99858156 1 + C G rs112488929 99858156 + 99858136 99858176 41 GGTCTTTGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGC GGTCTTTGGTCAAGGGTATAGGAGTAGCTGCGCTCCCCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858156 chr13:99858156 . . 0 21 hm5C_associated_SNPs_382 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_382 DeepMRMD:1;iRNA_m5C:1 383 chr13 113977378 113977378 1 + C A rs8001808 113977378 + 113977358 113977398 41 TTACAACAGTAGAGAGGGAACATCCTAAGACAGAGGAACTC TTACAACAGTAGAGAGGGAAAATCCTAAGACAGAGGAACTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMP1 ENSG00000185896 UTR3 Human protein_coding chr13:113977378 chr13:113977378 . . 0 21 hm5C_associated_SNPs_383 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_383 DeepMRMD:1;iRNA_m5C:1 384 chr14 21078296 21078296 1 + C G rs115267088 21078296 + 21078276 21078316 41 AACTGTTAGCCAGTAGGTAGCGTGGCCGAGCGGTCTAAGGC AACTGTTAGCCAGTAGGTAGGGTGGCCGAGCGGTCTAAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078296 chr14:21078296 . . 0 21 hm5C_associated_SNPs_384 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_384 DeepMRMD:1;iRNA_m5C:1 385 chr14 21078338 21078338 1 + C G rs144037355 21078338 + 21078318 21078358 41 CTGGATTAAGGCTCCAGTCTCTTCGGGGGCGTGGGTTCGAA CTGGATTAAGGCTCCAGTCTGTTCGGGGGCGTGGGTTCGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078338 chr14:21078338 . . 0 21 hm5C_associated_SNPs_385 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_385 DeepMRMD:1;iRNA_m5C:1 386 chr14 21151484 21151484 1 + C T rs115156442 21151484 + 21151464 21151504 41 TGTAGTACTTAATGTGTGGTCATCCTTAGGTCGCTGGTTCG TGTAGTACTTAATGTGTGGTTATCCTTAGGTCGCTGGTTCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151484 chr14:21151484 . . 0 21 hm5C_associated_SNPs_386 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_386 DeepMRMD:1;iRNA_m5C:1 387 chr14 21152235 21152235 1 + C G rs146849858 21152235 + 21152215 21152255 41 AGAGGTCCCGGGTTCAAATCCCGGACGAGCCCTCGTGGCTA AGAGGTCCCGGGTTCAAATCGCGGACGAGCCCTCGTGGCTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818;ENSG00000259171 upstream Human other chr14:21152235 chr14:21152235 . . 0 21 hm5C_associated_SNPs_387 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_387 DeepMRMD:1;iRNA_m5C:1 388 chr14 23341349 23341349 1 + C T rs56859206 23341349 + 23341329 23341369 41 CTCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCCTGGCAT CTCCCGGGCTGCCGCCGCCTTCCCGCCCCCAGCCCTGGCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP10 ENSG00000197324 UTR5 Human protein_coding chr14:23341349 chr14:23341349 . . 0 21 hm5C_associated_SNPs_388 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_388 DeepMRMD:1;iRNA_m5C:1 389 chr14 50053582 50053582 1 + C T rs531730938 50053582 + 50053562 50053602 41 CTCCAGCCTGGGCAACATAGCGAGACCCCGTCTCTTTTGAA CTCCAGCCTGGGCAACATAGTGAGACCCCGTCTCTTTTGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053582 chr14:50053582 . . 0 21 hm5C_associated_SNPs_389 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_389 DeepMRMD:1;iRNA_m5C:1 390 chr14 61263067 61263067 1 + C T rs113043441 61263067 + 61263047 61263087 41 GTTGACAAGGAGGTTGAGATCAGGAAAAAAGTGCTAAAGAT GTTGACAAGGAGGTTGAGATTAGGAAAAAAGTGCTAAAGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61263067 chr14:61263067 synonymous SNV . 0 21 hm5C_associated_SNPs_390 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_390 DeepMRMD:1;iRNA_m5C:1 391 chr14 75369890 75369890 1 + C G rs141856572 75369890 + 75369870 75369910 41 AGTGGGACCAAGCGTGGTCCCGAGGAAGGGCCAGAGCCTGG AGTGGGACCAAGCGTGGTCCGGAGGAAGGGCCAGAGCCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DLST ENSG00000119689 UTR3 Human protein_coding chr14:75369890 chr14:75369890 . . 0 21 hm5C_associated_SNPs_391 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_391 DeepMRMD:1;iRNA_m5C:1 392 chr14 100996330 100996330 1 + C T rs149360659 100996330 + 100996310 100996350 41 TATCACCCCGTGCTGCCCTCCGTCCTCGCCACCTGCTCCTG TATCACCCCGTGCTGCCCTCTGTCCTCGCCACCTGCTCCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100996330 chr14:100996330 synonymous SNV . 0 21 hm5C_associated_SNPs_392 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_392 DeepMRMD:1;iRNA_m5C:1 393 chr14 102499701 102499701 1 + C T rs75075497 102499701 + 102499681 102499721 41 GACAACCAGCAGAAGGCCAACGAGGTGGAGCAGATGATCCG GACAACCAGCAGAAGGCCAATGAGGTGGAGCAGATGATCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499701 chr14:102499701 synonymous SNV . 0 21 hm5C_associated_SNPs_393 2 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_393 DeepMRMD:1;iRNA_m5C:1 not specified not specified 394 chr14 105177427 105177427 1 + C T rs59751492 105177427 + 105177407 105177447 41 CCCTCCCAGGGCAGCCACACCGGTGACGCCGACGGCTTCAA CCCTCCCAGGGCAGCCACACTGGTGACGCCGACGGCTTCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105177427 chr14:105177427 synonymous SNV . 0 21 hm5C_associated_SNPs_394 2 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_394 DeepMRMD:1;iRNA_m5C:1 not specified not specified 395 chr15 28983179 28983179 1 + C T rs530145493 28983179 + 28983159 28983199 41 GCGGGCAGCTGGAGCGCTACCTGGGCGCGGCGGCCCACGGC GCGGGCAGCTGGAGCGCTACTTGGGCGCGGCGGCCCACGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WHAMMP2 ENSG00000248334 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28983179 chr15:28983179 . . 0 21 hm5C_associated_SNPs_395 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_395 DeepMRMD:1;iRNA_m5C:1 396 chr15 29346590 29346590 1 + C T rs148760039 29346590 + 29346570 29346610 41 AGACGGCCAACTGCCCATTCCGGAGGATGAGCCCTCCGTCC AGACGGCCAACTGCCCATTCTGGAGGATGAGCCCTCCGTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APBA2 ENSG00000034053 CDS Human protein_coding chr15:29346590 chr15:29346590 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_396 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_396 DeepMRMD:1;iRNA_m5C:1 397 chr15 31221493 31221493 1 + C T rs80120912 31221493 + 31221473 31221513 41 TGCAGCTGATTCATGATGCCCCCGAGGAGAGCCTGCGGGCC TGCAGCTGATTCATGATGCCTCCGAGGAGAGCCTGCGGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control FAN1 ENSG00000198690 CDS Human protein_coding chr15:31221493 chr15:31221493 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_397 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_397 DeepMRMD:1;iRNA_m5C:1 398 chr15 31669325 31669325 1 + C T rs570086684 31669325 + 31669305 31669345 41 TGGAAACCAGGTGTGTGAGCCGAATGCCTGCCAGGCCATGC TGGAAACCAGGTGTGTGAGCTGAATGCCTGCCAGGCCATGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLF13 ENSG00000169926 UTR3 Human protein_coding chr15:31669325 chr15:31669325 . . 0 21 hm5C_associated_SNPs_398 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_398 DeepMRMD:1;iRNA_m5C:1 399 chr15 36989578 36989578 1 + C A rs117638434 36989578 + 36989558 36989598 41 GACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA GACTTGCTTCTAGAGAAAAAACTGTCCTTCCTAGGTAAGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989578 chr15:36989578 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_399 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_399 DeepMRMD:1;iRNA_m5C:1 400 chr15 41854885 41854885 1 + C G rs56363203 41854885 + 41854865 41854905 41 ACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTTT ACTACGAAGATCGGGGGACCGGCTCCCTCTCCATCTGTTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854885 chr15:41854885 synonymous SNV . 0 21 hm5C_associated_SNPs_400 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_400 DeepMRMD:1;iRNA_m5C:1 401 chr15 43624189 43624189 1 + C T rs1549523 43624189 + 43624169 43624209 41 GGAACAGAAAAATGAGAAGACAACTCACTGGTAGAGTAACT GGAACAGAAAAATGAGAAGATAACTCACTGGTAGAGTAACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAL ENSG00000168803 UTR5 Human protein_coding chr15:43624189 chr15:43624189 . . 0 21 hm5C_associated_SNPs_401 0 0 0 0 2 chromatin 1 0 1 1 hm5C_site_401 DeepMRMD:1;iRNA_m5C:1 402 chr15 44159077 44159077 1 + C T rs145208595 44159077 + 44159057 44159097 41 CTCAGGTGATCTGCCCGCCTCGGCCTCCAAAAGTGCTGGAA CTCAGGTGATCTGCCCGCCTTGGCCTCCAAAAGTGCTGGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR76 ENSG00000092470 UTR3 Human protein_coding chr15:44159077 chr15:44159077 . . 0 21 hm5C_associated_SNPs_402 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_402 DeepMRMD:1;iRNA_m5C:1 403 chr15 44581338 44581338 1 + C G rs112768081 44581338 + 44581318 44581358 41 AACTACTGGAGCATCTCCTCCCGCCACGTCCTGCTTCAGGA AACTACTGGAGCATCTCCTCGCGCCACGTCCTGCTTCAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CASC4 ENSG00000166734 CDS Human protein_coding chr15:44581338 chr15:44581338 synonymous SNV . 0 21 hm5C_associated_SNPs_403 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_403 DeepMRMD:1;iRNA_m5C:1 404 chr15 59813520 59813520 1 + C T rs192486945 59813520 + 59813500 59813540 41 GAGGCCAAGATGAAGCTGGACAGGGACCAGCTACAGAAGCA GAGGCCAAGATGAAGCTGGATAGGGACCAGCTACAGAAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM81A ENSG00000157470 CDS Human protein_coding chr15:59813520 chr15:59813520 synonymous SNV . 0 21 hm5C_associated_SNPs_404 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_404 DeepMRMD:1;iRNA_m5C:1 405 chr15 64434067 64434067 1 + C T rs529664908 64434067 + 64434047 64434087 41 AGTTTCGGAACCACTGAGATCGGTCCTTGATTTGATGAGAG AGTTTCGGAACCACTGAGATTGGTCCTTGATTTGATGAGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX1 ENSG00000028528 UTR3 Human protein_coding chr15:64434067 chr15:64434067 . . 0 21 hm5C_associated_SNPs_405 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_405 DeepMRMD:1;iRNA_m5C:1 406 chr15 69652440 69652440 1 + C T rs146154864 69652440 + 69652420 69652460 41 ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCA ATGCTGAGCCTGAAGCTCCCTAGGCTGTTTAGCATAGACCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652440 chr15:69652440 synonymous SNV . 0 21 hm5C_associated_SNPs_406 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_406 DeepMRMD:1;iRNA_m5C:1 407 chr15 75631889 75631889 1 + C T rs111614145 75631889 + 75631869 75631909 41 GGGTGATCAGAACTGATTATCGGGCACCTGCCCTGTTCTGA GGGTGATCAGAACTGATTATTGGGCACCTGCCCTGTTCTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control COMMD4 ENSG00000140365 intronic Human protein_coding chr15:75631889 chr15:75631889 . . 0 21 hm5C_associated_SNPs_407 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_407 DeepMRMD:1;iRNA_m5C:1 408 chr15 78458638 78458638 1 + C T rs2304826 78458638 + 78458618 78458658 41 TGTTTTGCTACAATTAAGGACGGAAAGGTAACAGGAATCTT TGTTTTGCTACAATTAAGGATGGAAAGGTAACAGGAATCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IDH3A ENSG00000166411 CDS Human protein_coding chr15:78458638 chr15:78458638 synonymous SNV . 0 21 hm5C_associated_SNPs_408 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_408 DeepMRMD:1;iRNA_m5C:1 409 chr15 79152975 79152975 1 + C G rs117252182 79152975 + 79152955 79152995 41 GGTTCGAGCCCCACGTTGGGCGGGTTTGTTTTGCTTTCGTT GGTTCGAGCCCCACGTTGGGGGGGTTTGTTTTGCTTTCGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ADAMTS7;MORF4L1 ENSG00000185787 intronic Human protein_coding chr15:79152975 chr15:79152975 . . 0 21 hm5C_associated_SNPs_409 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_409 DeepMRMD:1;iRNA_m5C:1 410 chr15 80037068 80037068 1 + C G rs185560627 80037068 + 80037048 80037088 41 GGTTCAAATCCGGGTGCCCCCTGCCTGAAAGTTTTCTTACT GGTTCAAATCCGGGTGCCCCGTGCCTGAAAGTTTTCTTACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037068 chr15:80037068 . . 0 21 hm5C_associated_SNPs_410 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_410 DeepMRMD:1;iRNA_m5C:1 411 chr15 81294357 81294357 1 + C A rs185291823 81294357 + 81294337 81294377 41 CTGCAAGCCCTCTAGGAGGCCGAAAGCTGCAGCCCCTCCCC CTGCAAGCCCTCTAGGAGGCAGAAAGCTGCAGCCCCTCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TLNRD1 ENSG00000140406 UTR5 Human protein_coding chr15:81294357 chr15:81294357 . . 0 21 hm5C_associated_SNPs_411 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_411 DeepMRMD:1;iRNA_m5C:1 412 chr15 99671610 99671610 1 + C T rs192428760 99671610 + 99671590 99671630 41 GTGGATGCCGATCGGTTAGACCTGGAGGAGCTGAGCAAAGA GTGGATGCCGATCGGTTAGATCTGGAGGAGCTGAGCAAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99671610 chr15:99671610 synonymous SNV . 0 21 hm5C_associated_SNPs_412 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_412 DeepMRMD:1;iRNA_m5C:1 413 chr15 99674504 99674504 1 + C T rs547828967 99674504 + 99674484 99674524 41 GGCCTGGGGGGCGAGAAAGGCCCCCATGCTCATGGGCCGCG GGCCTGGGGGGCGAGAAAGGTCCCCATGCTCATGGGCCGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SYNM ENSG00000182253 UTR3 Human protein_coding chr15:99674504 chr15:99674504 . . 0 21 hm5C_associated_SNPs_413 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_413 DeepMRMD:1;iRNA_m5C:1 414 chr16 633706 633706 1 + C T rs1045283 633706 + 633686 633726 41 CAGCCTCAGTGTCAAGGGCCCGCCCACTGACCCAGCCGTAC CAGCCTCAGTGTCAAGGGCCTGCCCACTGACCCAGCCGTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGQ ENSG00000007541 UTR3 Human protein_coding chr16:633706 chr16:633706 . . 0 21 hm5C_associated_SNPs_414 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_414 DeepMRMD:1;iRNA_m5C:1 415 chr16 718514 718514 1 + C G rs7204542 718514 + 718494 718534 41 CCCCGCGCGGAGGAGATCACCATCCCCGCGGACGTCACCCC CCCCGCGCGGAGGAGATCACGATCCCCGCGGACGTCACCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:718514 chr16:718514 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_415 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_415 DeepMRMD:1;iRNA_m5C:1 416 chr16 2011269 2011269 1 + C T rs201009092 2011269 + 2011249 2011289 41 ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA ATCATGTGCATGTATGAAGCTGAAATGCAGTGGAAGAGGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011269 chr16:2011269 synonymous SNV . 0 21 hm5C_associated_SNPs_416 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_416 DeepMRMD:1;iRNA_m5C:1 417 chr16 2015256 2015256 1 + C T rs371847121 2015256 + 2015236 2015276 41 CGCCCAGAGCCCCCGGGGGCCTCAGCTCACCGCGCGCTGCC CGCCCAGAGCCCCCGGGGGCTTCAGCTCACCGCGCGCTGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015256 chr16:2015256 . . 0 21 hm5C_associated_SNPs_417 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_417 DeepMRMD:1;iRNA_m5C:1 418 chr16 2508439 2508439 1 + C T rs149900630 2508439 + 2508419 2508459 41 TTTTGTATTTTCGGTAGAGACGGGATTTCACCATGTTGGCC TTTTGTATTTTCGGTAGAGATGGGATTTCACCATGTTGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCNF ENSG00000260874 ncRNA_intronic Human lincRNA chr16:2508439 chr16:2508439 . . 0 21 hm5C_associated_SNPs_418 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_418 DeepMRMD:1;iRNA_m5C:1 419 chr16 3208961 3208961 1 + C A rs550170016 3208961 + 3208941 3208981 41 TATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAAT TATGATTCTCGCTTTGGGTGAGAGAGGTCCCGGGTTCAAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208961 chr16:3208961 . . 0 21 hm5C_associated_SNPs_419 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_419 DeepMRMD:1;iRNA_m5C:1 420 chr16 3222109 3222109 1 + C G rs150958924 3222109 + 3222089 3222129 41 AGAGGTCCCGGGTTCAAATCCCGGACGAGCCCTAGAAGTGG AGAGGTCCCGGGTTCAAATCGCGGACGAGCCCTAGAAGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222109 chr16:3222109 . . 0 21 hm5C_associated_SNPs_420 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_420 DeepMRMD:1;iRNA_m5C:1 421 chr16 3222110 3222110 1 + C T rs556784427 3222110 + 3222090 3222130 41 GAGGTCCCGGGTTCAAATCCCGGACGAGCCCTAGAAGTGGT GAGGTCCCGGGTTCAAATCCTGGACGAGCCCTAGAAGTGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222110 chr16:3222110 . . 0 21 hm5C_associated_SNPs_421 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_421 DeepMRMD:1;iRNA_m5C:1 422 chr16 3241503 3241503 1 + C A rs117373271 3241503 + 3241483 3241523 41 TAAAACGTTCCCAGGGAAGCCCGGCTAGCTCAGTCGGTAGA TAAAACGTTCCCAGGGAAGCACGGCTAGCTCAGTCGGTAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241503 chr16:3241503 . . 0 21 hm5C_associated_SNPs_422 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_422 DeepMRMD:1;iRNA_m5C:1 423 chr16 3242014 3242014 1 + C G rs533908867 3242014 + 3241994 3242034 41 GTTGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGT GTTGGTCTAGGGGTATGATTGTCGCTTAGGATGCGAGAGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242014 chr16:3242014 . . 0 21 hm5C_associated_SNPs_423 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_423 DeepMRMD:1;iRNA_m5C:1 424 chr16 3242049 3242049 1 + C A rs192567340 3242049 + 3242029 3242069 41 AGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTCTTCTTA AGAGGTCCCGGGTTCAAATCACGGACGAGCCCCTCTTCTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242049 chr16:3242049 . . 0 21 hm5C_associated_SNPs_424 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_424 DeepMRMD:1;iRNA_m5C:1 425 chr16 3242054 3242054 1 + C G rs570026290 3242054 + 3242034 3242074 41 TCCCGGGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTT TCCCGGGTTCAAATCCCGGAGGAGCCCCTCTTCTTATTTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242054 chr16:3242054 . . 0 21 hm5C_associated_SNPs_425 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_425 DeepMRMD:1;iRNA_m5C:1 426 chr16 5128001 5128001 1 + C G rs7195893 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ATGAAGCTGGGCAGCATGCAGTCTCCGTTCAGGGCCCGGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5128001 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_426 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_426 DeepMRMD:1;iRNA_m5C:1 427 chr16 14972674 14972674 1 + C T rs541333077 14972674 + 14972654 14972694 41 TGACCCAGGACAACGGCATTCTGACATTCTCAAACCTGGTA TGACCCAGGACAACGGCATTTTGACATTCTCAAACCTGGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972674 chr16:14972674 synonymous SNV . 0 21 hm5C_associated_SNPs_427 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_427 DeepMRMD:1;iRNA_m5C:1 428 chr16 14989626 14989626 1 + C T rs554946974 14989626 + 14989606 14989646 41 TCAGCCTGTGCTGCTGGGCCCGCACCCCATGTCCCTTGTCA TCAGCCTGTGCTGCTGGGCCTGCACCCCATGTCCCTTGTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NOMO1 ENSG00000103512 UTR3 Human protein_coding chr16:14989626 chr16:14989626 . . 0 21 hm5C_associated_SNPs_428 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_428 DeepMRMD:1;iRNA_m5C:1 429 chr16 22308511 22308511 1 + C T rs117203517 22308511 + 22308491 22308531 41 GATTAAGGCTCCAGTCTCTTCGGGGGCGTGGGTTCGAATCC GATTAAGGCTCCAGTCTCTTTGGGGGCGTGGGTTCGAATCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target POLR3E ENSG00000058600 upstream Human protein_coding chr16:22308511 chr16:22308511 . . 0 21 hm5C_associated_SNPs_429 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_429 DeepMRMD:1;iRNA_m5C:1 430 chr16 22580509 22580509 1 + C T rs546736623 22580509 + 22580489 22580529 41 GATTAACTAAGGCAGAGCTCCGGATGCTTGACAAGGATTTG GATTAACTAAGGCAGAGCTCTGGATGCTTGACAAGGATTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LOC653786 ENSG00000257838 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:22580509 chr16:22580509 . . 0 21 hm5C_associated_SNPs_430 0 0 0 0 2 unknown 1 0 1 1 hm5C_site_430 DeepMRMD:1;iRNA_m5C:1 431 chr16 27461195 27461195 1 + C T rs116214834 27461195 + 27461175 27461215 41 GGGAATGGCAATTTTTTGGGCGGCCCCTGGACGAAGGTCTG GGGAATGGCAATTTTTTGGGTGGCCCCTGGACGAAGGTCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IL21R-AS1 ENSG00000259954 ncRNA_intronic Human antisense chr16:27461195 chr16:27461195 . . 0 21 hm5C_associated_SNPs_431 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_431 DeepMRMD:1;iRNA_m5C:1 432 chr16 29706442 29706442 1 + C T rs200392225 29706442 + 29706422 29706462 41 GGGCTCCTGGTGGGCGGGGCCGCCTCGCACCGCTACGACCT GGGCTCCTGGTGGGCGGGGCTGCCTCGCACCGCTACGACCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29706442 chr16:29706442 synonymous SNV . 0 21 hm5C_associated_SNPs_432 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_432 DeepMRMD:1;iRNA_m5C:1 433 chr16 29706444 29706444 1 + C T rs2303255 29706444 + 29706424 29706464 41 GCTCCTGGTGGGCGGGGCCGCCTCGCACCGCTACGACCTGG GCTCCTGGTGGGCGGGGCCGTCTCGCACCGCTACGACCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29706444 chr16:29706444 nonsynonymous SNV 0.221 1 21 hm5C_associated_SNPs_433 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_433 DeepMRMD:1;iRNA_m5C:1 434 chr16 30976363 30976363 1 + C G rs201391072 30976363 + 30976343 30976383 41 CTCCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCT CTCCTGCCTCAGAGGCTCCAGCCCCGGAGCCTCCAGAACCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976363 chr16:30976363 nonsynonymous SNV 0.977 3 21 hm5C_associated_SNPs_434 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_434 DeepMRMD:1;iRNA_m5C:1 435 chr16 30990965 30990965 1 + C A rs150728823 30990965 + 30990945 30990985 41 ACAGAGACATCGGACGAGGCCGAGCGCCCTAGGCCCCTGCT ACAGAGACATCGGACGAGGCAGAGCGCCCTAGGCCCCTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30990965 chr16:30990965 synonymous SNV . 0 21 hm5C_associated_SNPs_435 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_435 DeepMRMD:1;iRNA_m5C:1 436 chr16 31194158 31194158 1 + C G rs185469113 31194158 + 31194138 31194178 41 AACGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTAC AACGATTCTCCTGCCTCAGCGTCCTGAGTAGCTGGGATTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FUS ENSG00000260304 ncRNA_exonic Human antisense chr16:31194158 chr16:31194158 . . 0 21 hm5C_associated_SNPs_436 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_436 DeepMRMD:1;iRNA_m5C:1 437 chr16 53524831 53524831 1 + C T rs28670961 53524831 + 53524811 53524851 41 GTGTGCAATGTCTGAGTGAACCTGTATAAGTGGAGGCACTT GTGTGCAATGTCTGAGTGAATCTGTATAAGTGGAGGCACTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBL2 ENSG00000103479 UTR3 Human protein_coding chr16:53524831 chr16:53524831 . . 0 21 hm5C_associated_SNPs_437 0 0 1 6 0 Ribosome 1 0 1 1 hm5C_site_437 DeepMRMD:1;iRNA_m5C:1 438 chr16 57333890 57333890 1 + C G rs184840621 57333890 + 57333870 57333910 41 TGGCCGAGCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTC TGGCCGAGCGGTCTAAGGCGGTGCGTTCAGGTCGCAGTCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333890 chr16:57333890 . . 0 21 hm5C_associated_SNPs_438 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_438 DeepMRMD:1;iRNA_m5C:1 439 chr16 57333911 57333911 1 + C A rs144318503 57333911 + 57333891 57333931 41 TGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAA TGCGTTCAGGTCGCAGTCTCACCTGGAGGCGTGGGTTCGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333911 chr16:57333911 . . 0 21 hm5C_associated_SNPs_439 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_439 DeepMRMD:1;iRNA_m5C:1 440 chr16 57714235 57714235 1 + C T rs141220380 57714235 + 57714215 57714255 41 GAGGTCAGACCTGAGGGGACCGTGTGCTGCTGTGACCACCT GAGGTCAGACCTGAGGGGACTGTGTGCTGCTGTGACCACCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714235 chr16:57714235 synonymous SNV . 0 21 hm5C_associated_SNPs_440 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_440 DeepMRMD:1;iRNA_m5C:1 441 chr16 67572606 67572606 1 + C T rs140402307 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCCGCCGGGGCCCTCACGGAAGCCCCCCGCGCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572606 nonsynonymous SNV 0.976 0 21 hm5C_associated_SNPs_441 0 0 0 0 2 unknown 1 0 1 1 hm5C_site_441 DeepMRMD:1;iRNA_m5C:1 442 chr16 69733124 69733124 1 + C A rs55719937 69733124 + 69733104 69733144 41 CTGCACTGTGGATGAAGTGGCGACTGGCTTGTGTGCTGACT CTGCACTGTGGATGAAGTGGAGACTGGCTTGTGTGCTGACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NFAT5 ENSG00000102908 UTR3 Human protein_coding chr16:69733124 chr16:69733124 . . 0 21 hm5C_associated_SNPs_442 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_442 DeepMRMD:1;iRNA_m5C:1 443 chr16 70194013 70194013 1 + C T rs142098932 70194013 + 70193993 70194033 41 CAAAGTATATTGGCCTCAAACGGAGACCCAGGGTTGCCAGT CAAAGTATATTGGCCTCAAATGGAGACCCAGGGTTGCCAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC400541 ENSG00000247228 ncRNA_intronic Human antisense chr16:70194013 chr16:70194013 . . 0 21 hm5C_associated_SNPs_443 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_443 DeepMRMD:1;iRNA_m5C:1 444 chr16 70822624 70822624 1 + C T rs115714969 70822624 + 70822604 70822644 41 TGGTTCAGTGGTAGAATTCTCGCCTGCCATGCGGGCGGCCG TGGTTCAGTGGTAGAATTCTTGCCTGCCATGCGGGCGGCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control VAC14 ENSG00000103043 intronic Human protein_coding chr16:70822624 chr16:70822624 . . 0 21 hm5C_associated_SNPs_444 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_444 DeepMRMD:1;iRNA_m5C:1 445 chr16 71460443 71460443 1 + C A rs552359940 71460443 + 71460423 71460463 41 CAGTCTCATAATCTGAAGGTCCTGAGTTCGAGCCTCAGAGA CAGTCTCATAATCTGAAGGTACTGAGTTCGAGCCTCAGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460443 chr16:71460443 . . 0 21 hm5C_associated_SNPs_445 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_445 DeepMRMD:1;iRNA_m5C:1 446 chr16 71460455 71460455 1 + C A rs375616702 71460455 + 71460435 71460475 41 CTGAAGGTCCTGAGTTCGAGCCTCAGAGAGGGCAGCTGTTT CTGAAGGTCCTGAGTTCGAGACTCAGAGAGGGCAGCTGTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460455 chr16:71460455 . . 0 21 hm5C_associated_SNPs_446 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_446 DeepMRMD:1;iRNA_m5C:1 447 chr16 81079241 81079241 1 + C T rs2278025 81079241 + 81079221 81079261 41 GATACCAGCATACAAGTGTACAGCACTTTACACACAAGAGG GATACCAGCATACAAGTGTATAGCACTTTACACACAAGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079241 chr16:81079241 . . 0 21 hm5C_associated_SNPs_447 0 0 0 19 0 Cytosol 1 0 1 1 hm5C_site_447 DeepMRMD:1;iRNA_m5C:1 448 chr16 83999000 83999000 1 + C A rs3743627 83999000 + 83998980 83999020 41 GAGCTGTCTGCCCTGGAGGCCGCCACAAGGGTGGGTGCGGT GAGCTGTCTGCCCTGGAGGCAGCCACAAGGGTGGGTGCGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83999000 chr16:83999000 synonymous SNV . 0 21 hm5C_associated_SNPs_448 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_448 DeepMRMD:1;iRNA_m5C:1 449 chr16 89627863 89627863 1 + C T rs575878848 89627863 + 89627843 89627883 41 GATGACATTCTCCGGAATCGCTGTACGGCCTTGATGAAAGC GATGACATTCTCCGGAATCGTTGTACGGCCTTGATGAAAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627863 chr16:89627863 . . 0 21 hm5C_associated_SNPs_449 0 0 1 0 1 unknown 1 0 1 1 hm5C_site_449 DeepMRMD:1;iRNA_m5C:1 450 chr16 89630613 89630613 1 + C T rs546979554 89630613 + 89630593 89630633 41 GGTGCCGGTATTGAGGCACCCAGGGAGCTGTTACTGGCGTG GGTGCCGGTATTGAGGCACCTAGGGAGCTGTTACTGGCGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89630613 chr16:89630613 . . 0 21 hm5C_associated_SNPs_450 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_450 DeepMRMD:1;iRNA_m5C:1 451 chr17 3629843 3629843 1 + C T rs190744073 3629843 + 3629823 3629863 41 TCTGAAAGAAGTAAACTAGCCGGGCACAGTGGCGTGCGCCT TCTGAAAGAAGTAAACTAGCTGGGCACAGTGGCGTGCGCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HASPIN ENSG00000177602 UTR3 Human protein_coding chr17:3629843 chr17:3629843 . . 0 21 hm5C_associated_SNPs_451 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_451 DeepMRMD:1;iRNA_m5C:1 452 chr17 4859364 4859364 1 + C T rs2230257 4859364 + 4859344 4859384 41 CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA CCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGGCCTGCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859364 chr17:4859364 synonymous SNV . 0 21 hm5C_associated_SNPs_452 2 0 1 0 2 nucleus 1 0 1 1 hm5C_site_452 DeepMRMD:1;iRNA_m5C:1 Glycogen storage disease type 13 Glycogen storage disease type 13 453 chr17 4901244 4901244 1 + C G rs566687755 4901244 + 4901224 4901264 41 CCCGCCCCTCGCTCCCGCCCCAGCTCGCGCTGCCCGGGCGG CCCGCCCCTCGCTCCCGCCCGAGCTCGCGCTGCCCGGGCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1C ENSG00000129250 UTR5 Human protein_coding chr17:4901244 chr17:4901244 . . 0 21 hm5C_associated_SNPs_453 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_453 DeepMRMD:1;iRNA_m5C:1 454 chr17 5029158 5029158 1 + C T rs578212292 5029158 + 5029138 5029178 41 TCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTC TCGGCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAATTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029158 chr17:5029158 . . 0 21 hm5C_associated_SNPs_454 0 0 0 0 2 cytosol 1 0 1 1 hm5C_site_454 DeepMRMD:1;iRNA_m5C:1 455 chr17 5333380 5333380 1 + C T rs8079643 5333380 + 5333360 5333400 41 TGCCTGTAATCTCAGCTACTCGGGAGGCTGGGGCAGGAGAA TGCCTGTAATCTCAGCTACTTGGGAGGCTGGGGCAGGAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPAIN ENSG00000263272 ncRNA_intronic Human antisense chr17:5333380 chr17:5333380 . . 0 21 hm5C_associated_SNPs_455 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_455 DeepMRMD:1;iRNA_m5C:1 456 chr17 7479892 7479892 1 + C T rs11078698 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACATGGGCGCCTCCTGTCATGCCTGTATCGGGGGCACCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479892 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_456 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_456 DeepMRMD:1;iRNA_m5C:1 457 chr17 7491331 7491331 1 + C T rs545206972 7491331 + 7491311 7491351 41 TGGGACTGTCTCCCGGACCCCAGTGCTGGGGTGGGGGAAGG TGGGACTGTCTCCCGGACCCTAGTGCTGGGGTGGGGGAAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MPDU1 ENSG00000129255 UTR3 Human protein_coding chr17:7491331 chr17:7491331 . . 0 21 hm5C_associated_SNPs_457 1 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_457 DeepMRMD:1;iRNA_m5C:1 Congenital disorder of glycosylation Congenital disorder of glycosylation 458 chr17 7810512 7810512 1 + C G rs139484082 7810512 + 7810492 7810532 41 AGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGCCAGAGAAG AGAAGGAGGAAGCTGAAAACGAGGAGGAAAAGCCAGAGAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810512 chr17:7810512 nonsynonymous SNV 0.910 1 21 hm5C_associated_SNPs_458 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_458 DeepMRMD:1;iRNA_m5C:1 459 chr17 8090563 8090563 1 + C T rs192993858 8090563 + 8090543 8090583 41 GCGGTGCCTCCGTGTTTCCCCCACGCTTTTGCCAACATTAA GCGGTGCCTCCGTGTTTCCCTCACGCTTTTGCCAACATTAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR4521 ENSG00000266638 ncRNA_exonic Human other chr17:8090563 chr17:8090563 . . 0 21 hm5C_associated_SNPs_459 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_459 DeepMRMD:1;iRNA_m5C:1 460 chr17 8090943 8090943 1 + C T rs187152371 8090943 + 8090923 8090963 41 CAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGG CAGTTGGTTAGAGCGTGGTGTTAATAACGCCAAGGTCGCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BORCS6;MIR4521 ENSG00000196544;ENSG00000266638 downstream Human other chr17:8090943 chr17:8090943 . . 0 21 hm5C_associated_SNPs_460 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_460 DeepMRMD:1;iRNA_m5C:1 461 chr17 8124912 8124912 1 + C A rs182964059 8124912 + 8124892 8124932 41 GCTGCCTTCCAAGCAGTTGACCCGGGTTCGATTCCCGGCCA GCTGCCTTCCAAGCAGTTGAACCGGGTTCGATTCCCGGCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124912 chr17:8124912 . . 0 21 hm5C_associated_SNPs_461 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_461 DeepMRMD:1;iRNA_m5C:1 462 chr17 15902823 15902823 1 + G C rs200004394 15902823 - 15902803 15902843 41 GAGCGCGCGAAGTACGGGACCGAGGTCGTGTGTGGCTGCGC GAGCGCGCGAAGTACGGGACGGAGGTCGTGTGTGGCTGCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295;ENSG00000214941 CDS Human other chr17:15902823 chr17:15902823 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_462 2 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_462 DeepMRMD:1;iRNA_m5C:1 not specified not specified 463 chr17 17080665 17080665 1 + C A rs200762157 17080665 + 17080645 17080685 41 AGCAGGTTGAAGGAGCAGCTCAAGGCTGCAACGGAAGCACT AGCAGGTTGAAGGAGCAGCTAAAGGCTGCAACGGAAGCACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17080665 chr17:17080665 synonymous SNV . 0 21 hm5C_associated_SNPs_463 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_463 DeepMRMD:1;iRNA_m5C:1 464 chr17 19239432 19239432 1 + C T rs1043809 19239432 + 19239412 19239452 41 ACTCATGCTGTTCCTGAGGCCGCCCTCTCCAGTCCCAGGAG ACTCATGCTGTTCCTGAGGCTGCCCTCTCCAGTCCCAGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control B9D1;EPN2 ENSG00000265263 ncRNA_exonic Human antisense chr17:19239432 chr17:19239432 . . 0 21 hm5C_associated_SNPs_464 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_464 DeepMRMD:1;iRNA_m5C:1 465 chr17 20217460 20217460 1 + C T rs191585744 20217460 + 20217440 20217480 41 ATTACTGTCCACTGACCCTGCTCTGCCCACCACCCAGCTGC ATTACTGTCCACTGACCCTGTTCTGCCCACCACCCAGCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPECC1 ENSG00000263494 ncRNA_intronic Human lincRNA chr17:20217460 chr17:20217460 . . 0 21 hm5C_associated_SNPs_465 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_465 DeepMRMD:1;iRNA_m5C:1 466 chr17 29877141 29877141 1 + C A rs575764901 29877141 + 29877121 29877161 41 GTCTCGTAAACCGAAGATCGCGGGTTCGAACCCCGTCCGTG GTCTCGTAAACCGAAGATCGAGGGTTCGAACCCCGTCCGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target RAB11FIP4;MIR193A ENSG00000131242;ENSG00000207614 intergenic Human other chr17:29877141 chr17:29877141 . . 0 21 hm5C_associated_SNPs_466 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_466 DeepMRMD:1;iRNA_m5C:1 467 chr17 30348583 30348583 1 + C T rs189879515 30348583 + 30348563 30348603 41 AGGTGGTTCCGCTTCTCAACCGGGATCAGAACCAGGCCCTA AGGTGGTTCCGCTTCTCAACTGGGATCAGAACCAGGCCCTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30348583 chr17:30348583 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_467 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_467 DeepMRMD:1;iRNA_m5C:1 468 chr17 34050874 34050874 1 + C T rs116786997 34050874 + 34050854 34050894 41 TGCTAACATTAGGGCACAACCTGTTGGATAGTTTTAGCTTC TGCTAACATTAGGGCACAACTTGTTGGATAGTTTTAGCTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34050874 chr17:34050874 . . 0 21 hm5C_associated_SNPs_468 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_468 DeepMRMD:1;iRNA_m5C:1 469 chr17 34052508 34052508 1 + C T rs114642173 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGTGGTCCCACAAAGCACTTTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052508 . . 0 21 hm5C_associated_SNPs_469 0 0 1 18 0 Cytosol 1 0 1 1 hm5C_site_469 DeepMRMD:1;iRNA_m5C:1 470 chr17 34070289 34070289 1 + C T rs117695737 34070289 + 34070269 34070309 41 AGGCACCTGGGGTGGGGGGGCGGAGCCCAGGCCTCTGGCTG AGGCACCTGGGGTGGGGGGGTGGAGCCCAGGCCTCTGGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RASL10B ENSG00000141150 UTR3 Human other chr17:34070289 chr17:34070289 . . 0 21 hm5C_associated_SNPs_470 0 0 1 0 0 insoluble cytoplasm 1 0 1 1 hm5C_site_470 DeepMRMD:1;iRNA_m5C:1 471 chr17 37023968 37023968 1 + C A rs182985889 37023968 + 37023948 37023988 41 GGTTCAAATCCGGGTGCCCCCTCGGGTTTCTTTAAGTTTTT GGTTCAAATCCGGGTGCCCCATCGGGTTTCTTTAAGTTTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target RPL23;LASP1 ENSG00000244086;ENSG00000002834 intergenic Human other chr17:37023968 chr17:37023968 . . 0 21 hm5C_associated_SNPs_471 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_471 DeepMRMD:1;iRNA_m5C:1 472 chr17 37358647 37358647 1 + C A rs2228666 37358647 + 37358627 37358667 41 TCCATTCCCGGGCTCGATGCCGGAAAAACACCTTGGCCCGC TCCATTCCCGGGCTCGATGCAGGAAAAACACCTTGGCCCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358647 chr17:37358647 synonymous SNV . 0 21 hm5C_associated_SNPs_472 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_472 DeepMRMD:1;iRNA_m5C:1 473 chr17 39978704 39978704 1 + C T rs372369060 39978704 + 39978684 39978724 41 TGAGACACAGAGGCCCACTGCGAGGGGGACAGTGGCGGTGG TGAGACACAGAGGCCCACTGTGAGGGGGACAGTGGCGGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP10 ENSG00000141756 UTR3 Human protein_coding chr17:39978704 chr17:39978704 . . 0 21 hm5C_associated_SNPs_473 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_473 DeepMRMD:1;iRNA_m5C:1 474 chr17 40169620 40169620 1 + G T rs35468867 40169620 - 40169600 40169640 41 ACAGCCCCTGGGCTCCCGCCCCGGCGCGGAGACCACCGTGG ACAGCCCCTGGGCTCCCGCCACGGCGCGGAGACCACCGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNAJC7;NKIRAS2 ENSG00000168256;ENSG00000168259 UTR5 Human other chr17:40169620 chr17:40169620 . . 0 21 hm5C_associated_SNPs_474 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_474 DeepMRMD:1;iRNA_m5C:1 475 chr17 43185023 43185023 1 + C A rs2269746 43185023 + 43185003 43185043 41 TCTTTCCTACCTTGGGGGAACCTGGAACTTGGAAAGGCTCC TCTTTCCTACCTTGGGGGAAACTGGAACTTGGAAAGGCTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NMT1 ENSG00000136448 UTR3 Human protein_coding chr17:43185023 chr17:43185023 . . 0 21 hm5C_associated_SNPs_475 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_475 DeepMRMD:1;iRNA_m5C:1 476 chr17 46052092 46052092 1 + C T rs186237369 46052092 + 46052072 46052112 41 ACCACTCACCTCTTGGTTAGCGGGAGTGTGCTGCCCCCACC ACCACTCACCTCTTGGTTAGTGGGAGTGTGCTGCCCCCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK5RAP3 ENSG00000108465 intronic Human protein_coding chr17:46052092 chr17:46052092 . . 0 21 hm5C_associated_SNPs_476 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_476 DeepMRMD:1;iRNA_m5C:1 477 chr17 59482065 59482065 1 + C A rs182290035 59482065 + 59482045 59482085 41 CTCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCT CTCGTCGTGCGACCCTCCCCACGCGCGGGAACCACCCACCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482065 chr17:59482065 nonsynonymous SNV 0.455 4 21 hm5C_associated_SNPs_477 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_477 DeepMRMD:1;iRNA_m5C:1 478 chr17 65822320 65822320 1 + C G rs73351760 65822320 + 65822300 65822340 41 GAGACCCAGGATTCTGAGGACGACGAGGAGGATGAGATGGA GAGACCCAGGATTCTGAGGAGGACGAGGAGGATGAGATGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BPTF ENSG00000171634 CDS Human protein_coding chr17:65822320 chr17:65822320 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_478 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_478 DeepMRMD:1;iRNA_m5C:1 479 chr17 74557777 74557777 1 + C G rs137955606 74557777 + 74557757 74557797 41 ACTGAGGGAAATAATCTATTCTGAGGCTTAAGGGTTTGGCT ACTGAGGGAAATAATCTATTGTGAGGCTTAAGGGTTTGGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD1A ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74557777 chr17:74557777 . . 0 21 hm5C_associated_SNPs_479 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_479 DeepMRMD:1;iRNA_m5C:1 480 chr17 75398205 75398205 1 + C G rs189537244 75398205 + 75398185 75398225 41 TCCACCCCACCCCGGAGGGTCCAGACTCCCCTACTCCGAGC TCCACCCCACCCCGGAGGGTGCAGACTCCCCTACTCCGAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 CDS Human protein_coding chr17:75398205 chr17:75398205 synonymous SNV . 0 21 hm5C_associated_SNPs_480 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_480 DeepMRMD:1;iRNA_m5C:1 481 chr17 76417755 76417755 1 + C T rs183641996 76417755 + 76417735 76417775 41 TCTGTTTGGAGAGAGGCTCTCGGTAAACAGAGTTCGCATTC TCTGTTTGGAGAGAGGCTCTTGGTAAACAGAGTTCGCATTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PGS1 ENSG00000087157 intronic Human protein_coding chr17:76417755 chr17:76417755 . . 0 21 hm5C_associated_SNPs_481 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_481 DeepMRMD:1;iRNA_m5C:1 482 chr17 80012377 80012377 1 + C G rs140038239 80012377 + 80012357 80012397 41 GCCATCCTGATGGCCAGGTCCTCTCTCAGGGAGCTGCAGAA GCCATCCTGATGGCCAGGTCGTCTCTCAGGGAGCTGCAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPS1 ENSG00000169727 CDS Human protein_coding chr17:80012377 chr17:80012377 synonymous SNV . 0 21 hm5C_associated_SNPs_482 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_482 DeepMRMD:1;iRNA_m5C:1 483 chr17 80559745 80559745 1 + C T rs112887170 80559745 + 80559725 80559765 41 GACGCGGGGGGAGCCATCCCCGCCGCCCTCACAGGACCCAC GACGCGGGGGGAGCCATCCCTGCCGCCCTCACAGGACCCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control FOXK2 ENSG00000141568 UTR3 Human protein_coding chr17:80559745 chr17:80559745 . . 0 21 hm5C_associated_SNPs_483 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_483 DeepMRMD:1;iRNA_m5C:1 484 chr17 80680760 80680760 1 + C A rs191683466 80680760 + 80680740 80680780 41 CGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGGCGTTTG CGTGCTGTGGATACCTCCCCAAGGTGAGTGCACGGCGTTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680760 chr17:80680760 nonsynonymous SNV 0.996 2 21 hm5C_associated_SNPs_484 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_484 DeepMRMD:1;iRNA_m5C:1 485 chr17 80887648 80887648 1 + C T rs112064048 80887648 + 80887628 80887668 41 TGGAGCTCCCAGCGTCCCCTCGGGGTTCAATCCTCCAGGAC TGGAGCTCCCAGCGTCCCCTTGGGGTTCAATCCTCCAGGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBCD ENSG00000141556 intronic Human protein_coding chr17:80887648 chr17:80887648 . . 0 21 hm5C_associated_SNPs_485 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_485 DeepMRMD:1;iRNA_m5C:1 486 chr18 9862005 9862005 1 + C A rs145436140 9862005 + 9861985 9862025 41 TTGAATATGACGTTACCTTGCAGACTAAAAGGTTGAAGGCC TTGAATATGACGTTACCTTGAAGACTAAAAGGTTGAAGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAB31 ENSG00000168461 UTR3 Human protein_coding chr18:9862005 chr18:9862005 . . 0 21 hm5C_associated_SNPs_486 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_486 DeepMRMD:1;iRNA_m5C:1 487 chr18 19209200 19209200 1 + C T rs142797517 19209200 + 19209180 19209220 41 AACATAAATGTGGGACAGAGCTGTCTATTTAGTATATCAAA AACATAAATGTGGGACAGAGTTGTCTATTTAGTATATCAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPD1 ENSG00000167088 UTR3 Human protein_coding chr18:19209200 chr18:19209200 . . 0 21 hm5C_associated_SNPs_487 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_487 DeepMRMD:1;iRNA_m5C:1 488 chr18 20513350 20513350 1 + C A rs142828641 20513350 + 20513330 20513370 41 CCGCCTCCGAGCCCGGCCGGCAGCCCCCGGCCTTAAAGCGC CCGCCTCCGAGCCCGGCCGGAAGCCCCCGGCCTTAAAGCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MIR4741 ENSG00000264817 ncRNA_exonic Human other chr18:20513350 chr18:20513350 . . 0 21 hm5C_associated_SNPs_488 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_488 DeepMRMD:1;iRNA_m5C:1 489 chr18 29671937 29671937 1 + C T rs183357442 29671937 + 29671917 29671957 41 GGCGCTCCCGCGTTCGGTGACGGCCGGGTAGGCTGTAGGCA GGCGCTCCCGCGTTCGGTGATGGCCGGGTAGGCTGTAGGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF138 ENSG00000265008 ncRNA_exonic Human antisense chr18:29671937 chr18:29671937 . . 0 21 hm5C_associated_SNPs_489 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_489 DeepMRMD:1;iRNA_m5C:1 490 chr18 72167184 72167184 1 + C A rs191869036 72167184 + 72167164 72167204 41 CTTCCAAGAACCTTCGAGATCTGCGGTCTGGGGTCTGGTTG CTTCCAAGAACCTTCGAGATATGCGGTCTGGGGTCTGGTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNDP2 ENSG00000133313 UTR5 Human protein_coding chr18:72167184 chr18:72167184 . . 0 21 hm5C_associated_SNPs_490 0 0 1 0 3 Ribosome 1 0 1 1 hm5C_site_490 DeepMRMD:1;iRNA_m5C:1 491 chr18 77730660 77730660 1 + C T rs116832047 77730660 + 77730640 77730680 41 AGAAATCACACGGACCAGCACCTTGATCTGGGACTTCCAGA AGAAATCACACGGACCAGCATCTTGATCTGGGACTTCCAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 UTR3 Human protein_coding chr18:77730660 chr18:77730660 . . 0 21 hm5C_associated_SNPs_491 0 0 1 2 0 Cytosol 1 0 1 1 hm5C_site_491 DeepMRMD:1;iRNA_m5C:1 492 chr19 681756 681756 1 + C T rs371259653 681756 + 681736 681776 41 CCCGAGGCCCCCCATCATCCCCTGTTATTTATTGCCACAGC CCCGAGGCCCCCCATCATCCTCTGTTATTTATTGCCACAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FSTL3 ENSG00000070404 UTR3 Human protein_coding chr19:681756 chr19:681756 . 0.200 0 21 hm5C_associated_SNPs_492 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_492 DeepMRMD:1;iRNA_m5C:1 493 chr19 806451 806451 1 + C T rs11549887 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCTATCCCCTCGGCGGCGGCGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806451 synonymous SNV . 0 21 hm5C_associated_SNPs_493 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_493 DeepMRMD:1;iRNA_m5C:1 494 chr19 808586 808586 1 + C G rs13169 808586 + 808566 808606 41 CACAAGCTGCACGGGAAGCCCATCCGCATCACGCTCTCGAA CACAAGCTGCACGGGAAGCCGATCCGCATCACGCTCTCGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808586 chr19:808586 synonymous SNV . 0 21 hm5C_associated_SNPs_494 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_494 DeepMRMD:1;iRNA_m5C:1 495 chr19 971936 971936 1 + C A rs138086881 971936 + 971916 971956 41 TCTGCTCCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAG TCTGCTCCCAACAAAGGAGGAGGCGGCGGCGGCGGCAGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3A ENSG00000116017 CDS Human protein_coding chr19:971936 chr19:971936 synonymous SNV . 0 21 hm5C_associated_SNPs_495 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_495 DeepMRMD:1;iRNA_m5C:1 496 chr19 1037857 1037857 1 + C T rs112701025 1037857 + 1037837 1037877 41 TGCCCGGACCCGGGGGAGGTCCCTGAATATCCCCCTTACTA TGCCCGGACCCGGGGGAGGTTCCTGAATATCCCCCTTACTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037857 chr19:1037857 synonymous SNV . 0 21 hm5C_associated_SNPs_496 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_496 DeepMRMD:1;iRNA_m5C:1 497 chr19 1241781 1241781 1 + C A rs564285599 1241781 + 1241761 1241801 41 CGCGTCGTCCTCCTCGCCCTCCAGGCCGCCCGCGCCGCGCC CGCGTCGTCCTCCTCGCCCTACAGGCCGCCCGCGCCGCGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5D ENSG00000099624 UTR5 Human protein_coding chr19:1241781 chr19:1241781 . . 0 21 hm5C_associated_SNPs_497 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_497 DeepMRMD:1;iRNA_m5C:1 498 chr19 1279105 1279105 1 + C T rs148703889 1279105 + 1279085 1279125 41 TGACTGTGACTTGTGCCTCTCTCCTGCCCCCGTGGGGACAT TGACTGTGACTTGTGCCTCTTTCCTGCCCCCGTGGGGACAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C19orf24 ENSG00000228300 CDS Human protein_coding chr19:1279105 chr19:1279105 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_498 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_498 DeepMRMD:1;iRNA_m5C:1 499 chr19 1438865 1438865 1 + C T rs7251165 1438865 + 1438845 1438885 41 TTCACCTACCGCGGCGTGGACCTCGACCAGCTGCTGGACAT TTCACCTACCGCGGCGTGGATCTCGACCAGCTGCTGGACAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1438865 chr19:1438865 synonymous SNV . 0 21 hm5C_associated_SNPs_499 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_499 DeepMRMD:1;iRNA_m5C:1 500 chr19 2413775 2413775 1 + C G rs10153477 2413775 + 2413755 2413795 41 GGCATCGTGAGCTGGGGAATCGGGTGTGCGGAAGCCCGGCG GGCATCGTGAGCTGGGGAATGGGGTGTGCGGAAGCCCGGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2413775 chr19:2413775 nonsynonymous SNV 0.030 3 21 hm5C_associated_SNPs_500 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_500 DeepMRMD:1;iRNA_m5C:1 501 chr19 3578644 3578644 1 + C G rs145971836 3578644 + 3578624 3578664 41 CATCCTGCACCTTGGGGGCTCCAGCCCCCCTAAAATTAAAT CATCCTGCACCTTGGGGGCTGCAGCCCCCCTAAAATTAAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HMG20B ENSG00000064961 UTR3 Human protein_coding chr19:3578644 chr19:3578644 . . 0 21 hm5C_associated_SNPs_501 0 0 0 1 0 Cytosol 1 0 1 1 hm5C_site_501 DeepMRMD:1;iRNA_m5C:1 502 chr19 3762698 3762698 1 + C A rs13960 3762698 + 3762678 3762718 41 GCAAGCTGCCCGCAATACGTCATGGCGACCAAACGCCTTTT GCAAGCTGCCCGCAATACGTAATGGCGACCAAACGCCTTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MIR1268A ENSG00000183617 UTR5 Human protein_coding chr19:3762698 chr19:3762698 . . 0 21 hm5C_associated_SNPs_502 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_502 DeepMRMD:1;iRNA_m5C:1 503 chr19 4724141 4724141 1 + C T rs553016069 4724141 + 4724121 4724161 41 CAGTTGACCCGGGTTCGATTCCCGGCCAACGCATGCGGTAC CAGTTGACCCGGGTTCGATTTCCGGCCAACGCATGCGGTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target DPP9 ENSG00000142002 intronic Human protein_coding chr19:4724141 chr19:4724141 . . 0 21 hm5C_associated_SNPs_503 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_503 DeepMRMD:1;iRNA_m5C:1 504 chr19 4954456 4954456 1 + C T rs374424470 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTCGTGTCCCCCAGGACGGGCAAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954456 . 0.000 0 21 hm5C_associated_SNPs_504 0 0 0 0 2 chromatin 1 0 1 1 hm5C_site_504 DeepMRMD:1;iRNA_m5C:1 505 chr19 5135388 5135388 1 + C T rs141692080 5135388 + 5135368 5135408 41 GAGGCACCCATAGCCTCCCTCGGAAAGGGCTGCCCGGCCAC GAGGCACCCATAGCCTCCCTTGGAAAGGGCTGCCCGGCCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5135388 chr19:5135388 synonymous SNV . 0 21 hm5C_associated_SNPs_505 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_505 DeepMRMD:1;iRNA_m5C:1 506 chr19 5690310 5690310 1 + C G rs568723208 5690310 + 5690290 5690330 41 TCCGCGCGGCGCCAGCCCTTCCGCCACGGCCGTCTCTGGAG TCCGCGCGGCGCCAGCCCTTGCGCCACGGCCGTCTCTGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690310 chr19:5690310 . . 0 21 hm5C_associated_SNPs_506 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_506 DeepMRMD:1;iRNA_m5C:1 507 chr19 5691641 5691641 1 + C G rs201621814 5691641 + 5691621 5691661 41 AAGAAAGACTGAGCCCCTCCCCTGCCCTCTCCCTGAAATAA AAGAAAGACTGAGCCCCTCCGCTGCCCTCTCCCTGAAATAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL36 ENSG00000130255 UTR3 Human protein_coding chr19:5691641 chr19:5691641 . . 0 21 hm5C_associated_SNPs_507 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_507 DeepMRMD:1;iRNA_m5C:1 508 chr19 7969347 7969347 1 + C G rs41284492 7969347 + 7969327 7969367 41 TCATCTCAGGGACTGTCTGGCGCCCCCCTCCCCCGGCCTGG TCATCTCAGGGACTGTCTGGGGCCCCCCTCCCCCGGCCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAP2K7 ENSG00000076984 intronic Human protein_coding chr19:7969347 chr19:7969347 . . 0 21 hm5C_associated_SNPs_508 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_508 DeepMRMD:1;iRNA_m5C:1 509 chr19 7979010 7979010 1 + C A rs183484324 7979010 + 7978990 7979030 41 TTGCATGGCTGGTCCCAGGGCCAGCACAGGCCCGAGGCCGG TTGCATGGCTGGTCCCAGGGACAGCACAGGCCCGAGGCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP2K7 ENSG00000076984 UTR3 Human protein_coding chr19:7979010 chr19:7979010 . . 0 21 hm5C_associated_SNPs_509 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_509 DeepMRMD:1;iRNA_m5C:1 510 chr19 8478291 8478291 1 + C T rs530839730 8478291 + 8478271 8478311 41 GCCTGTGCGGCCGCCCGGCCCGGCCGCGGATCAGGTAGGCA GCCTGTGCGGCCGCCCGGCCTGGCCGCGGATCAGGTAGGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MARCH2 ENSG00000099785 UTR5 Human protein_coding chr19:8478291 chr19:8478291 . . 0 21 hm5C_associated_SNPs_510 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_510 DeepMRMD:1;iRNA_m5C:1 511 chr19 10397133 10397133 1 + C T rs114170067 10397133 + 10397113 10397153 41 TGCAGTCTTGACCTTTTGGGCTCAAGTGATCCTCCCACCTC TGCAGTCTTGACCTTTTGGGTTCAAGTGATCCTCCCACCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ICAM1 ENSG00000267607 ncRNA_exonic Human antisense chr19:10397133 chr19:10397133 . . 0 21 hm5C_associated_SNPs_511 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_511 DeepMRMD:1;iRNA_m5C:1 512 chr19 10942324 10942324 1 + C T rs185820576 10942324 + 10942304 10942344 41 TAGGCCCGGAGCCGTTGGCCCGGGCCGGCCTTGCCCTATTC TAGGCCCGGAGCCGTTGGCCTGGGCCGGCCTTGCCCTATTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNM2 ENSG00000079805 UTR3 Human protein_coding chr19:10942324 chr19:10942324 . . 0 21 hm5C_associated_SNPs_512 2 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_512 DeepMRMD:1;iRNA_m5C:1 Charcot-Marie-Tooth, Intermediate Charcot-Marie-Tooth, Intermediate 513 chr19 10943338 10943338 1 + G A rs2075168 10943338 - 10943318 10943358 41 TGTGTTAGCGTTGCCTGGTGCGGGGCAGGGCCTAACAAGGA TGTGTTAGCGTTGCCTGGTGTGGGGCAGGGCCTAACAAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TMED1 ENSG00000099203 UTR3 Human protein_coding chr19:10943338 chr19:10943338 . . 0 21 hm5C_associated_SNPs_513 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_513 DeepMRMD:1;iRNA_m5C:1 514 chr19 11032439 11032439 1 + C T rs576714524 11032439 + 11032419 11032459 41 CACTACGGGAGCTAGGGGCCCGCCCCGCGGACTGACAGCAC CACTACGGGAGCTAGGGGCCTGCCCCGCGGACTGACAGCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11032439 chr19:11032439 . . 0 21 hm5C_associated_SNPs_514 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_514 DeepMRMD:1;iRNA_m5C:1 515 chr19 11032501 11032501 1 + C T rs564514650 11032501 + 11032481 11032521 41 TGCCCGCCGCCCCCGCCGGGCGGCTTTCCCCCTTGTACTGG TGCCCGCCGCCCCCGCCGGGTGGCTTTCCCCCTTGTACTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11032501 chr19:11032501 . . 0 21 hm5C_associated_SNPs_515 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_515 DeepMRMD:1;iRNA_m5C:1 516 chr19 11145691 11145691 1 + C T rs28997582 11145691 + 11145671 11145711 41 TCGTGGATCATCAAGGACGACGCGGAGGTGGAGCGGCTGAC TCGTGGATCATCAAGGACGATGCGGAGGTGGAGCGGCTGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145691 chr19:11145691 synonymous SNV . 0 21 hm5C_associated_SNPs_516 2 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_516 DeepMRMD:1;iRNA_m5C:1 not specified not specified 517 chr19 11243411 11243411 1 + C A rs55971831 11243411 + 11243391 11243431 41 TCCGTCTCAAAAAAAAAAAACAAAAAAAAACCATGCATGGT TCCGTCTCAAAAAAAAAAAAAAAAAAAAAACCATGCATGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control LDLR ENSG00000130164 UTR3 Human protein_coding chr19:11243411 chr19:11243411 . . 0 21 hm5C_associated_SNPs_517 1 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_517 DeepMRMD:1;iRNA_m5C:1 Familial hypercholesterolemia Familial hypercholesterolemia 518 chr19 13884080 13884080 1 + C G rs574897910 13884080 + 13884060 13884100 41 GATCCCCCTGCCTCAGCCTCCCAAAGTGCTGGGACTACAGG GATCCCCCTGCCTCAGCCTCGCAAAGTGCTGGGACTACAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_exonic Human antisense chr19:13884080 chr19:13884080 . . 0 21 hm5C_associated_SNPs_518 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_518 DeepMRMD:1;iRNA_m5C:1 519 chr19 13884586 13884586 1 + C G rs147089928 13884586 + 13884566 13884606 41 GGTTCAAGCGACTCTCCTGCCTCAGCCTCCCGAGTAGCTGG GGTTCAAGCGACTCTCCTGCGTCAGCCTCCCGAGTAGCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_intronic Human antisense chr19:13884586 chr19:13884586 . . 0 21 hm5C_associated_SNPs_519 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_519 DeepMRMD:1;iRNA_m5C:1 520 chr19 17322803 17322803 1 + C T rs184066363 17322803 + 17322783 17322823 41 AAGGCCGTCGTCCTTCGTAACGGTCAGAGTGAAGACCCCCC AAGGCCGTCGTCCTTCGTAATGGTCAGAGTGAAGACCCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17322803 chr19:17322803 nonsynonymous SNV 0.981 2 21 hm5C_associated_SNPs_520 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_520 DeepMRMD:1;iRNA_m5C:1 521 chr19 17692914 17692914 1 + C T rs530808814 17692914 + 17692894 17692934 41 TTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGT TTTTAGTAGAGACGGGGTTTTACCATGTTGGCCAGGCTGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17692914 chr19:17692914 . . 0 21 hm5C_associated_SNPs_521 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_521 DeepMRMD:1;iRNA_m5C:1 522 chr19 18046000 18046000 1 + C T rs548714784 18046000 + 18045980 18046020 41 CAAAGCACGGGGATTACAAACGTGAGTGATCGCACCCGGCC CAAAGCACGGGGATTACAAATGTGAGTGATCGCACCCGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC124 ENSG00000007080 UTR5 Human protein_coding chr19:18046000 chr19:18046000 . . 0 21 hm5C_associated_SNPs_522 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_522 DeepMRMD:1;iRNA_m5C:1 523 chr19 18054643 18054643 1 + C T rs1052564 18054643 + 18054623 18054663 41 GGGGCCAAGGCGCCGGGCCCCGGGGCCATGCTCTTATCACC GGGGCCAAGGCGCCGGGCCCTGGGGCCATGCTCTTATCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CCDC124 ENSG00000007080 UTR3 Human protein_coding chr19:18054643 chr19:18054643 . . 0 21 hm5C_associated_SNPs_523 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_523 DeepMRMD:1;iRNA_m5C:1 524 chr19 18530298 18530298 1 + C T rs539441578 18530298 + 18530278 18530318 41 AGCCGCCGCTGCCGCCGCCGCCGCGGCCGTCTGGAGCTCCC AGCCGCCGCTGCCGCCGCCGTCGCGGCCGTCTGGAGCTCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSBP4 ENSG00000130511 UTR5 Human protein_coding chr19:18530298 chr19:18530298 . . 0 21 hm5C_associated_SNPs_524 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_524 DeepMRMD:1;iRNA_m5C:1 525 chr19 18543841 18543841 1 + C T rs138143670 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATCGGGCAGGGCGCTGGCAGGGCTAATGTGAGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543841 synonymous SNV . 0 21 hm5C_associated_SNPs_525 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_525 DeepMRMD:1;iRNA_m5C:1 526 chr19 21300992 21300992 1 + C G rs144995791 21300992 + 21300972 21301012 41 TTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT TTCAGCAGGGCATGGTGGCTGATGCCTGTAATCCCAACACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300992 chr19:21300992 nonsynonymous SNV 0.030 0 21 hm5C_associated_SNPs_526 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_526 DeepMRMD:1;iRNA_m5C:1 527 chr19 24010071 24010071 1 + C A rs9305011 24010071 + 24010051 24010091 41 CTTGACTTCCAGATGGAACACTACATCTATAAAAGGAAAAG CTTGACTTCCAGATGGAACAATACATCTATAAAAGGAAAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout RPSAP58 ENSG00000205246 CDS Human other chr19:24010071 chr19:24010071 nonsynonymous SNV 0.957 0 21 hm5C_associated_SNPs_527 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_527 DeepMRMD:1;iRNA_m5C:1 528 chr19 33467675 33467675 1 + C T rs141881474 33467675 + 33467655 33467695 41 TAAAAACCAAGAGAATGGGCCGGGTGCACTGGCTCACGCCT TAAAAACCAAGAGAATGGGCTGGGTGCACTGGCTCACGCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FAAP24 ENSG00000131944 UTR3 Human protein_coding chr19:33467675 chr19:33467675 . . 0 21 hm5C_associated_SNPs_528 0 0 1 0 0 cytosol 1 0 1 1 hm5C_site_528 DeepMRMD:1;iRNA_m5C:1 529 chr19 34891856 34891856 1 + C T rs147161659 34891856 + 34891836 34891876 41 GGGCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCC GGGCAGGCTGGTCTTGAACTTCTGACCTCAGGTGATCTGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34891856 chr19:34891856 . . 0 21 hm5C_associated_SNPs_529 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_529 DeepMRMD:1;iRNA_m5C:1 530 chr19 34893009 34893009 1 + C T rs117782236 34893009 + 34892989 34893029 41 CAGGCGTGAGTCACCGCGCCCGGCTCATTTTAAAATTTTTG CAGGCGTGAGTCACCGCGCCTGGCTCATTTTAAAATTTTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893009 chr19:34893009 . . 0 21 hm5C_associated_SNPs_530 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_530 DeepMRMD:1;iRNA_m5C:1 531 chr19 38755406 38755406 1 + C G rs1046773 38755406 + 38755386 38755426 41 GGCTTTGGCACCTGGCGGACCCTCCCGGAGCGTCGGCACCT GGCTTTGGCACCTGGCGGACGCTCCCGGAGCGTCGGCACCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPINT2 ENSG00000167642 UTR5 Human protein_coding chr19:38755406 chr19:38755406 . . 0 21 hm5C_associated_SNPs_531 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_531 DeepMRMD:1;iRNA_m5C:1 532 chr19 39220561 39220561 1 + C T rs564893795 39220561 + 39220541 39220581 41 ACCCACCCAGCCCCTCTCCCCTCTCTGCTCCAGACTCACTT ACCCACCCAGCCCCTCTCCCTTCTCTGCTCCAGACTCACTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ACTN4 ENSG00000130402 UTR3 Human protein_coding chr19:39220561 chr19:39220561 . . 0 21 hm5C_associated_SNPs_532 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_532 DeepMRMD:1;iRNA_m5C:1 533 chr19 39601147 39601147 1 + C T rs555701273 39601147 + 39601127 39601167 41 CTTCCTCCTCTCCTGCCCACCTGGCAAGGGCATCGCCAGGT CTTCCTCCTCTCCTGCCCACTTGGCAAGGGCATCGCCAGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601147 chr19:39601147 . . 0 21 hm5C_associated_SNPs_533 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_533 DeepMRMD:1;iRNA_m5C:1 534 chr19 39948371 39948371 1 + C T rs199661076 39948371 + 39948351 39948391 41 AGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTGTGAG AGGATGGAGCAGAGGACATTTTAGAGAAAGGTGTGTGTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948371 chr19:39948371 synonymous SNV . 0 21 hm5C_associated_SNPs_534 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_534 DeepMRMD:1;iRNA_m5C:1 535 chr19 42731675 42731675 1 + C T rs536487597 42731675 + 42731655 42731695 41 AATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAG AATCCCAGCACTTTGGGAGGTCGAGGCGGGCAGATCACGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF526 ENSG00000167625 UTR3 Human protein_coding chr19:42731675 chr19:42731675 . . 0 21 hm5C_associated_SNPs_535 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_535 DeepMRMD:1;iRNA_m5C:1 536 chr19 46026006 46026006 1 + C T rs201980485 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026006 nonsynonymous SNV 0.119 0 21 hm5C_associated_SNPs_536 0 0 1 0 3 Ribosome 1 0 1 1 hm5C_site_536 DeepMRMD:1;iRNA_m5C:1 537 chr19 47506821 47506821 1 + C A rs139116656 47506821 + 47506801 47506841 41 TTGTGTCGCATACTGGGTGTCACGGCACACATTTACTCTGC TTGTGTCGCATACTGGGTGTAACGGCACACATTTACTCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGAP35 ENSG00000160007 UTR3 Human protein_coding chr19:47506821 chr19:47506821 . . 0 21 hm5C_associated_SNPs_537 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_537 DeepMRMD:1;iRNA_m5C:1 538 chr19 48259063 48259063 1 + C T rs115908259 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAGCTCGGAGCTGACAGACTTGCTCAGGACCCTGAAGGTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259063 nonsynonymous SNV 0.351 2 21 hm5C_associated_SNPs_538 0 0 1 0 2 unknown 1 0 1 1 hm5C_site_538 DeepMRMD:1;iRNA_m5C:1 539 chr19 48685964 48685964 1 + C T rs142099351 48685964 + 48685944 48685984 41 TACTGCAAGGGCCGCGACCACGGCGTCCTGGACGCCCTGCA TACTGCAAGGGCCGCGACCATGGCGTCCTGGACGCCCTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control C19orf68 ENSG00000185453 CDS Human protein_coding chr19:48685964 chr19:48685964 synonymous SNV . 0 21 hm5C_associated_SNPs_539 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_539 DeepMRMD:1;iRNA_m5C:1 540 chr19 48959021 48959021 1 + C T rs184790733 48959021 + 48959001 48959041 41 CAGCATTCCCCCTGGCACTGCGGGGGCCTGGCCAGCTCATG CAGCATTCCCCCTGGCACTGTGGGGGCCTGGCCAGCTCATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KCNJ14 ENSG00000182324;ENSG00000105447 UTR5;UTR3 Human other chr19:48959021 chr19:48959021 . . 0 21 hm5C_associated_SNPs_540 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_540 DeepMRMD:1;iRNA_m5C:1 541 chr19 49993254 49993254 1 + C G rs141468307 49993254 + 49993234 49993274 41 GAGCAACATTCACCATCTTTCGTTTGAGTCTCACGGCCATG GAGCAACATTCACCATCTTTGGTTTGAGTCTCACGGCCATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993254 chr19:49993254 . . 0 21 hm5C_associated_SNPs_541 0 0 1 1 0 unknown 1 0 1 1 hm5C_site_541 DeepMRMD:1;iRNA_m5C:1 542 chr19 49995430 49995430 1 + C A rs8113219 49995430 + 49995410 49995450 41 GTGCAAGCACTTGGGGACAGCATGAGCTTGCTGTTGTACAC GTGCAAGCACTTGGGGACAGAATGAGCTTGCTGTTGTACAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995430 chr19:49995430 . . 0 21 hm5C_associated_SNPs_542 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_542 DeepMRMD:1;iRNA_m5C:1 543 chr19 50029298 50029298 1 + C T rs34072018 50029298 + 50029278 50029318 41 TCCCTTCGTGGAGACGACACCGGGGTCCTCCTGCCCACCCC TCCCTTCGTGGAGACGACACTGGGGTCCTCCTGCCCACCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FCGRT ENSG00000104870 CDS Human protein_coding chr19:50029298 chr19:50029298 synonymous SNV . 0 21 hm5C_associated_SNPs_543 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_543 DeepMRMD:1;iRNA_m5C:1 544 chr19 50810310 50810310 1 + C T rs200485394 50810310 + 50810290 50810330 41 TCATCCCTCTCTTCAGAGAGCGCATCCTCTCTGGAAAGCTG TCATCCCTCTCTTCAGAGAGTGCATCCTCTCTGGAAAGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50810310 chr19:50810310 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_544 0 0 0 0 1 cytosol 1 0 1 1 hm5C_site_544 DeepMRMD:1;iRNA_m5C:1 545 chr19 50902141 50902141 1 + C A rs3218768 50902141 + 50902121 50902161 41 CGGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGGC CGGCGGCCAGGCCCAGGGCCAGGGGTGCCCCCAAAGCGGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902141 chr19:50902141 synonymous SNV . 0 21 hm5C_associated_SNPs_545 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_545 DeepMRMD:1;iRNA_m5C:1 546 chr19 53067494 53067494 1 + C T rs528021995 53067494 + 53067474 53067514 41 TGGGTCTATAAGGAATTGCACGTGAGATGGCACACATATTT TGGGTCTATAAGGAATTGCATGTGAGATGGCACACATATTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF808;ZNF701 ENSG00000198482 UTR3 Human protein_coding chr19:53067494 chr19:53067494 . . 0 21 hm5C_associated_SNPs_546 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_546 DeepMRMD:1;iRNA_m5C:1 547 chr19 54041425 54041425 1 + C T rs578138012 54041425 + 54041405 54041445 41 GCGTGGGAGTACGAGGCTGACGCGGCGGCCCTGTCCCCGTA GCGTGGGAGTACGAGGCTGATGCGGCGGCCCTGTCCCCGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF331 ENSG00000130844 UTR5 Human protein_coding chr19:54041425 chr19:54041425 . . 0 21 hm5C_associated_SNPs_547 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_547 DeepMRMD:1;iRNA_m5C:1 548 chr19 55897302 55897302 1 + C G rs116572311 55897302 + 55897282 55897322 41 GCCTCGCCCCTCGCCTTCCTCTTTCCGTCTCAGGTCGCCGC GCCTCGCCCCTCGCCTTCCTGTTTCCGTCTCAGGTCGCCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL28 ENSG00000108107 UTR5 Human protein_coding chr19:55897302 chr19:55897302 . . 0 21 hm5C_associated_SNPs_548 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_548 DeepMRMD:1;iRNA_m5C:1 549 chr19 58806365 58806365 1 + C T rs555389728 58806365 + 58806345 58806385 41 CACACCGAGGAGAGGCCCTACGAGTGTAACCACTGCGGGAA CACACCGAGGAGAGGCCCTATGAGTGTAACCACTGCGGGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF8 ENSG00000083842;ENSG00000273439 CDS Human other chr19:58806365 chr19:58806365 synonymous SNV . 0 21 hm5C_associated_SNPs_549 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_549 DeepMRMD:1;iRNA_m5C:1 550 chr20 2124902 2124902 1 + C A rs150150776 2124902 + 2124882 2124922 41 GGGTTTCTTCTGGAACGGGGCGTGAGGACACAAGGAGGCCT GGGTTTCTTCTGGAACGGGGAGTGAGGACACAAGGAGGCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK35 ENSG00000125834 UTR3 Human protein_coding chr20:2124902 chr20:2124902 . . 0 21 hm5C_associated_SNPs_550 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_550 DeepMRMD:1;iRNA_m5C:1 551 chr20 2635157 2635157 1 + C T rs144743768 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGCTGCAATACAGGAGGAGTTAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635157 synonymous SNV . 0 21 hm5C_associated_SNPs_551 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_551 DeepMRMD:1;iRNA_m5C:1 552 chr20 3849021 3849021 1 + C T rs183102846 3849021 + 3849001 3849041 41 GCCGAGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGG GCCGAGCGCAGTGGCTCACGTCTGTAATCCCAGCACTTTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAVS ENSG00000088888 UTR3 Human protein_coding chr20:3849021 chr20:3849021 . . 0 21 hm5C_associated_SNPs_552 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_552 DeepMRMD:1;iRNA_m5C:1 553 chr20 6749073 6749073 1 + C T rs535209432 6749073 + 6749053 6749093 41 CCCCGAGTCCCGGAGCCGGCCCCGCGCGGGGCCACGCGTCC CCCCGAGTCCCGGAGCCGGCTCCGCGCGGGGCCACGCGTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP2 ENSG00000125845 UTR5 Human protein_coding chr20:6749073 chr20:6749073 . . 0 21 hm5C_associated_SNPs_553 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_553 DeepMRMD:1;iRNA_m5C:1 554 chr20 33764041 33764041 1 + C T rs186899359 33764041 + 33764021 33764061 41 TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG TCTAGAGCCCATGTCTTCTTTGAAGTGGCTGTGAATGGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PROCR ENSG00000101000 CDS Human protein_coding chr20:33764041 chr20:33764041 synonymous SNV . 0 21 hm5C_associated_SNPs_554 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_554 DeepMRMD:1;iRNA_m5C:1 555 chr20 35220993 35220993 1 + C T rs556678847 35220993 + 35220973 35221013 41 AGCTTTTCCCACAATGGTGGCAGGAAACTTTGGGGAAAGCA AGCTTTTCCCACAATGGTGGTAGGAAACTTTGGGGAAAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TGIF2 ENSG00000259716 ncRNA_intronic Human other chr20:35220993 chr20:35220993 . . 0 21 hm5C_associated_SNPs_555 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_555 DeepMRMD:1;iRNA_m5C:1 556 chr20 44506564 44506564 1 + C G rs115265475 44506564 + 44506544 44506584 41 GCCACTGAAGTCCAAGAAGGCTTTTGGAATCTGTGGAGAGA GCCACTGAAGTCCAAGAAGGGTTTTGGAATCTGTGGAGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZSWIM3 ENSG00000132801 CDS Human protein_coding chr20:44506564 chr20:44506564 nonsynonymous SNV 0.039 0 21 hm5C_associated_SNPs_556 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_556 DeepMRMD:1;iRNA_m5C:1 557 chr20 44513048 44513048 1 + C T rs150692129 44513048 + 44513028 44513068 41 GTCTGTCTCCGTCACCCAGGCTGGAGTGCAGTGGCGCAATC GTCTGTCTCCGTCACCCAGGTTGGAGTGCAGTGGCGCAATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513048 chr20:44513048 . . 0 21 hm5C_associated_SNPs_557 0 0 1 0 0 nucleus 1 0 1 1 hm5C_site_557 DeepMRMD:1;iRNA_m5C:1 558 chr20 47895559 47895559 1 + C T rs140365533 47895559 + 47895539 47895579 41 TTTGCCAGTTAGTTCTGATACATCGGCCTCAAAAGGCCCGG TTTGCCAGTTAGTTCTGATATATCGGCCTCAAAAGGCCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895559 chr20:47895559 . . 0 21 hm5C_associated_SNPs_558 0 0 1 2 0 unknown 1 0 1 1 hm5C_site_558 DeepMRMD:1;iRNA_m5C:1 559 chr20 57466771 57466771 1 + C A rs571673520 57466771 + 57466751 57466791 41 CCGGCCGCGCCCCGCCGCCGCCGCCGCCGCCATGGGCTGCC CCGGCCGCGCCCCGCCGCCGACGCCGCCGCCATGGGCTGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNAS ENSG00000087460 UTR5 Human protein_coding chr20:57466771 chr20:57466771 . . 0 21 hm5C_associated_SNPs_559 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_559 DeepMRMD:1;iRNA_m5C:1 560 chr20 60882762 60882762 1 + C A rs200789814 60882762 + 60882742 60882782 41 AGCAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAG AGCAACTAGCCCGAGCCCCGAGCCCAGTTCCGGGAATGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882762 chr20:60882762 nonsynonymous SNV 0.194 1 21 hm5C_associated_SNPs_560 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_560 DeepMRMD:1;iRNA_m5C:1 561 chr20 62566991 62566991 1 + C A rs3810500 62566991 + 62566971 62567011 41 CCCTGTGCTGGCCCCGGGTCCGCCCCAGAGGAGTCCACACA CCCTGTGCTGGCCCCGGGTCAGCCCCAGAGGAGTCCACACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566991 chr20:62566991 . . 0 21 hm5C_associated_SNPs_561 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_561 DeepMRMD:1;iRNA_m5C:1 562 chr20 62567038 62567038 1 + C T rs11554630 62567038 + 62567018 62567058 41 CCTCCAGAAGGGGCTGGGCCCGGGGTCCTGCAGGCGGCACC CCTCCAGAAGGGGCTGGGCCTGGGGTCCTGCAGGCGGCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62567038 chr20:62567038 . . 0 21 hm5C_associated_SNPs_562 1 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_562 DeepMRMD:1;iRNA_m5C:1 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 563 chr20 62587762 62587762 1 + G T rs142269879 62587762 - 62587742 62587782 41 CTCCCGGCGGCCCATGCGCGCCGCCCGGCCAGGCCCGCAAA CTCCCGGCGGCCCATGCGCGACGCCCGGCCAGGCCCGCAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UCKL1-AS1 ENSG00000198276 UTR5 Human protein_coding chr20:62587762 chr20:62587762 . . 0 21 hm5C_associated_SNPs_563 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_563 DeepMRMD:1;iRNA_m5C:1 564 chr21 9825935 9825935 1 + C T rs547209479 9825935 + 9825915 9825955 41 GGCGGCGGTGAGGCCCCGCGCGTGTGTCCCGGCTGCGGTCG GGCGGCGGTGAGGCCCCGCGTGTGTGTCCCGGCTGCGGTCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825935 chr21:9825935 . . 0 21 hm5C_associated_SNPs_564 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_564 DeepMRMD:1;iRNA_m5C:1 565 chr21 9825985 9825985 1 + C G rs550039611 9825985 + 9825965 9826005 41 GAGGGGTCCCCGTGGCGTCCCCTTCCCCGCCGGCCGCCTTT GAGGGGTCCCCGTGGCGTCCGCTTCCCCGCCGGCCGCCTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825985 chr21:9825985 . . 0 21 hm5C_associated_SNPs_565 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_565 DeepMRMD:1;iRNA_m5C:1 566 chr21 9825999 9825999 1 + C A rs538400500 9825999 + 9825979 9826019 41 GCGTCCCCTTCCCCGCCGGCCGCCTTTCTCGCGCCTTCCCC GCGTCCCCTTCCCCGCCGGCAGCCTTTCTCGCGCCTTCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825999 chr21:9825999 . . 0 21 hm5C_associated_SNPs_566 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_566 DeepMRMD:1;iRNA_m5C:1 567 chr21 35474950 35474950 1 + C T rs563671687 35474950 + 35474930 35474970 41 AATTTGGTTACCTGGGTTCACAGCTTGCTTGAAGAGAAAGG AATTTGGTTACCTGGGTTCATAGCTTGCTTGAAGAGAAAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC5A3 ENSG00000272657 ncRNA_intronic Human processed_transcript chr21:35474950 chr21:35474950 . . 0 21 hm5C_associated_SNPs_567 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_567 DeepMRMD:1;iRNA_m5C:1 568 chr21 38568183 38568183 1 + C T rs147100615 38568183 + 38568163 38568203 41 CTCAGCTGACAGGGCCAAAACGGGCTGGCCAGGCAGCTCTG CTCAGCTGACAGGGCCAAAATGGGCTGGCCAGGCAGCTCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TTC3 ENSG00000182670 CDS Human protein_coding chr21:38568183 chr21:38568183 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_568 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_568 DeepMRMD:1;iRNA_m5C:1 569 chr21 44001185 44001185 1 + C T rs117081037 44001185 + 44001165 44001205 41 AAGTCACCGTCATCCCAGCCCCTGGCCTTCCTGCTGCCCTC AAGTCACCGTCATCCCAGCCTCTGGCCTTCCTGCTGCCCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC37A1 ENSG00000160190 UTR3 Human protein_coding chr21:44001185 chr21:44001185 . . 0 21 hm5C_associated_SNPs_569 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_569 DeepMRMD:1;iRNA_m5C:1 570 chr21 47988229 47988229 1 + C T rs9941876 47988229 + 47988209 47988249 41 AGATCACGAGGTCAGGAGACCGAGACCATCCTGGCTAACAT AGATCACGAGGTCAGGAGACTGAGACCATCCTGGCTAACAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIP2A ENSG00000160305 UTR3 Human protein_coding chr21:47988229 chr21:47988229 . . 0 21 hm5C_associated_SNPs_570 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_570 DeepMRMD:1;iRNA_m5C:1 571 chr22 17590500 17590500 1 + C T rs575142705 17590500 + 17590480 17590520 41 CAGTCTGACCAGGGCTACATCTCCAGGAGCTCCCCGCAGCC CAGTCTGACCAGGGCTACATTTCCAGGAGCTCCCCGCAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control IL17RA ENSG00000177663 CDS Human protein_coding chr22:17590500 chr22:17590500 synonymous SNV . 0 21 hm5C_associated_SNPs_571 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_571 DeepMRMD:1;iRNA_m5C:1 572 chr22 18572581 18572581 1 + C G rs139987168 18572581 + 18572561 18572601 41 GGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GGGTTCATGCCATTCTCCTGGCTCAGCCTCCCGAGTAGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572581 chr22:18572581 . . 0 21 hm5C_associated_SNPs_572 1 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_572 DeepMRMD:1;iRNA_m5C:1 Zellweger syndrome Zellweger syndrome 573 chr22 18893995 18893995 1 + C G rs409155 18893995 + 18893975 18894015 41 AGCCTGGTGAAGGAGTTGCCCAGGTACGCGGGCGGGGCGGG AGCCTGGTGAAGGAGTTGCCGAGGTACGCGGGCGGGGCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18893995 chr22:18893995 synonymous SNV . 0 21 hm5C_associated_SNPs_573 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_573 DeepMRMD:1;iRNA_m5C:1 574 chr22 19118608 19118608 1 + G A rs576399328 19118608 - 19118588 19118628 41 AGCCTGTCCCCAGGACAGGACTCTGGTGGCCCTGCTGCTGC AGCCTGTCCCCAGGACAGGATTCTGGTGGCCCTGCTGCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TSSK2;DGCR14 ENSG00000206203;ENSG00000100056 UTR5;UTR3 Human other chr22:19118608 chr22:19118608 . . 0 21 hm5C_associated_SNPs_574 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_574 DeepMRMD:1;iRNA_m5C:1 575 chr22 21213632 21213632 1 + C G rs144160898 21213632 + 21213612 21213652 41 AAGGTTGGGGTCGCCTCTTCCGAGGTGAGCCTGGGGCAGGG AAGGTTGGGGTCGCCTCTTCGGAGGTGAGCCTGGGGCAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNAP29 ENSG00000099940 CDS Human protein_coding chr22:21213632 chr22:21213632 synonymous SNV . 0 21 hm5C_associated_SNPs_575 1 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_575 DeepMRMD:1;iRNA_m5C:1 Cerebral dysgenesis, neuropathy, ichthyosis, and palmoplantar keratoderma syndrome Cerebral dysgenesis, neuropathy, ichthyosis, and palmoplantar keratoderma syndrome 576 chr22 21306194 21306194 1 + C T rs189274432 21306194 + 21306174 21306214 41 TTGCCAGTGAGAACGGTGACCGCCTCCTGCTCTGCACGGTC TTGCCAGTGAGAACGGTGACTGCCTCCTGCTCTGCACGGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRKL ENSG00000099942 UTR3 Human protein_coding chr22:21306194 chr22:21306194 . . 0 21 hm5C_associated_SNPs_576 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_576 DeepMRMD:1;iRNA_m5C:1 577 chr22 21996599 21996599 1 + C T rs367932168 21996599 + 21996579 21996619 41 GACGGAAGCGGCCCCTGGGCCCGAGGGGCTGGAGCCGGGCC GACGGAAGCGGCCCCTGGGCTCGAGGGGCTGGAGCCGGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDF2L1 ENSG00000128228 UTR5 Human protein_coding chr22:21996599 chr22:21996599 . . 0 21 hm5C_associated_SNPs_577 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_577 DeepMRMD:1;iRNA_m5C:1 578 chr22 22050296 22050296 1 + C A rs140258718 22050296 + 22050276 22050316 41 GTATATGTCTGGTTTTCTTACCCCTACTTCTGTCATCTTCT GTATATGTCTGGTTTTCTTAACCCTACTTCTGTCATCTTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPIL2 ENSG00000100023 UTR3 Human protein_coding chr22:22050296 chr22:22050296 . . 0 21 hm5C_associated_SNPs_578 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_578 DeepMRMD:1;iRNA_m5C:1 579 chr22 23523630 23523630 1 + C A rs5751602 23523630 + 23523610 23523650 41 AGGTCCAACTTCGAGCGGATCCGCAAGGGCCATGGCCAGCC AGGTCCAACTTCGAGCGGATACGCAAGGGCCATGGCCAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23523630 chr22:23523630 synonymous SNV . 0 21 hm5C_associated_SNPs_579 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_579 DeepMRMD:1;iRNA_m5C:1 580 chr22 26880006 26880006 1 + C T rs371251054 26880006 + 26879986 26880026 41 AGAGAGGCGGCGCCCCGGGGCCCCGAGGCGGAGTTCGAGTC AGAGAGGCGGCGCCCCGGGGTCCCGAGGCGGAGTTCGAGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRD ENSG00000100104 CDS Human protein_coding chr22:26880006 chr22:26880006 synonymous SNV . 0 21 hm5C_associated_SNPs_580 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_580 DeepMRMD:1;iRNA_m5C:1 581 chr22 29183406 29183406 1 + C T rs371153753 29183406 + 29183386 29183426 41 CAAAATGCTGGGATTACAGGCGTGAGCCACGGCACGCAGCC CAAAATGCTGGGATTACAGGTGTGAGCCACGGCACGCAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC117 ENSG00000159873 UTR3 Human protein_coding chr22:29183406 chr22:29183406 . . 0 21 hm5C_associated_SNPs_581 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_581 DeepMRMD:1;iRNA_m5C:1 582 chr22 36662722 36662722 1 + C T rs142061305 36662722 + 36662702 36662742 41 AGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGG AGCACTTTGGGAGGCCAAGGTGGGCGGATCACGAGGTCAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control APOL1 ENSG00000100342 UTR3 Human protein_coding chr22:36662722 chr22:36662722 . . 0 21 hm5C_associated_SNPs_582 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_582 DeepMRMD:1;iRNA_m5C:1 583 chr22 36662726 36662726 1 + C A rs191246295 36662726 + 36662706 36662746 41 CTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGAT CTTTGGGAGGCCAAGGCGGGAGGATCACGAGGTCAGGAGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control APOL1 ENSG00000100342 UTR3 Human protein_coding chr22:36662726 chr22:36662726 . . 0 21 hm5C_associated_SNPs_583 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_583 DeepMRMD:1;iRNA_m5C:1 584 chr22 37965214 37965214 1 + C T rs545907231 37965214 + 37965194 37965234 41 GTCTCACCTCCCAAAGGGACCGCCTGCCCCCAGCTCATCCC GTCTCACCTCCCAAAGGGACTGCCTGCCCCCAGCTCATCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC42EP1 ENSG00000128283 UTR3 Human protein_coding chr22:37965214 chr22:37965214 . . 0 21 hm5C_associated_SNPs_584 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_584 DeepMRMD:1;iRNA_m5C:1 585 chr22 38013172 38013172 1 + C T rs3817997 38013172 + 38013152 38013192 41 AAGGGTCCCACCACAGCCAGCGGGCTGGCCTCCCACCCCAG AAGGGTCCCACCACAGCCAGTGGGCTGGCCTCCCACCCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GGA1 ENSG00000100083 UTR3 Human protein_coding chr22:38013172 chr22:38013172 . . 0 21 hm5C_associated_SNPs_585 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_585 DeepMRMD:1;iRNA_m5C:1 586 chr22 46499106 46499106 1 + C G rs78060012 46499106 + 46499086 46499126 41 TCTGGATCGGCGGTCCCCATCAGAGGCCTGGGCTGAGTCCT TCTGGATCGGCGGTCCCCATGAGAGGCCTGGGCTGAGTCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MIRLET7BHG ENSG00000197182 CDS Human lincRNA chr22:46499106 chr22:46499106 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_586 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_586 DeepMRMD:1;iRNA_m5C:1 587 chrX 217645 217645 1 + C T rs755789308 217645 + 217625 217665 41 CTCCCAAAGTGCTGGGATGACAGGCATGAGCCACTGTGCCC CTCCCAAAGTGCTGGGATGATAGGCATGAGCCACTGTGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:217645 chrX:217645 . . 0 21 hm5C_associated_SNPs_587 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_587 DeepMRMD:1;iRNA_m5C:1 588 chrX 219500 219500 1 + C T rs181820684 219500 + 219480 219520 41 ATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAGGC ATCCACCCGCCTCGGCCTCCTAAAGTGCTGGGATGACAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219500 chrX:219500 . . 0 21 hm5C_associated_SNPs_588 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_588 DeepMRMD:1;iRNA_m5C:1 589 chrX 1720158 1720158 1 + C T rs137976911 1720158 + 1720138 1720178 41 ACCGGGAGCCCAGCAAGGGCCGGGGCCGGGCCACCGGAGAC ACCGGGAGCCCAGCAAGGGCTGGGGCCGGGCCACCGGAGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control AKAP17A ENSG00000197976 CDS Human protein_coding chrX:1720158 chrX:1720158 nonsynonymous SNV 0.002 3 21 hm5C_associated_SNPs_589 0 0 1 0 0 nucleolus 1 0 1 1 hm5C_site_589 DeepMRMD:1;iRNA_m5C:1 590 chrX 47431033 47431033 1 + C T rs112568375 47431033 + 47431013 47431053 41 TTCTGGAATTGGGGGACCCCCGCCAAAGACTGAGCCCCCTG TTCTGGAATTGGGGGACCCCTGCCAAAGACTGAGCCCCCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 UTR3 Human protein_coding chrX:47431033 chrX:47431033 . . 0 21 hm5C_associated_SNPs_590 0 0 1 1 0 Cytosol 1 0 1 1 hm5C_site_590 DeepMRMD:1;iRNA_m5C:1 591 chrX 49368274 49368274 1 + C T rs782181968 49368274 + 49368254 49368294 41 TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTGATAGCC TATTTTTTATTTTTAAGGGCTGAAGCCTGAAGCTGATAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GAGE1 ENSG00000205777 CDS Human protein_coding chrX:49368274 chrX:49368274 nonsynonymous SNV 0.008 1 21 hm5C_associated_SNPs_591 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_591 DeepMRMD:1;iRNA_m5C:1 592 chrX 68049341 68049341 1 + C G rs756470369 68049341 + 68049321 68049361 41 GATCACCCGGGGGCGCAGAGCCCCCGTCGCGCCTCGTGCGG GATCACCCGGGGGCGCAGAGGCCCCGTCGCGCCTCGTGCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNB1 ENSG00000090776 UTR5 Human protein_coding chrX:68049341 chrX:68049341 . . 0 21 hm5C_associated_SNPs_592 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_592 DeepMRMD:1;iRNA_m5C:1 593 chrX 73043297 73043297 1 + G A rs138595829 73043297 - 73043277 73043317 41 GAGATGAGGGCATTAGATCACTGACAGCTGAAGATAGAAGA GAGATGAGGGCATTAGATCATTGACAGCTGAAGATAGAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043297 chrX:73043297 . . 0 21 hm5C_associated_SNPs_593 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_593 DeepMRMD:1;iRNA_m5C:1 594 chrX 73045745 73045745 1 + G A rs41303699 73045745 - 73045725 73045765 41 GAGAACCTGGGACTGTTGAGCATGTTTAATACTTTCCTTGA GAGAACCTGGGACTGTTGAGTATGTTTAATACTTTCCTTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045745 chrX:73045745 . . 0 21 hm5C_associated_SNPs_594 0 0 1 1 0 unknown 1 0 1 1 hm5C_site_594 DeepMRMD:1;iRNA_m5C:1 595 chrX 73047076 73047076 1 + G A rs187945496 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTGATAGGTGCAGAATGTCGGCTATCAGAGCAAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047076 . . 0 21 hm5C_associated_SNPs_595 0 0 1 2 0 unknown 1 0 1 1 hm5C_site_595 DeepMRMD:1;iRNA_m5C:1 596 chrX 153658754 153658754 1 + C T rs59887267 153658754 + 153658734 153658774 41 GGATTACAGGCGTGAGCCACCGCGCCCGGCCTGTGAGGGGG GGATTACAGGCGTGAGCCACTGCGCCCGGCCTGTGAGGGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6AP1 ENSG00000071553 UTR3 Human protein_coding chrX:153658754 chrX:153658754 . . 0 21 hm5C_associated_SNPs_596 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_596 DeepMRMD:1;iRNA_m5C:1 597 chr3 49050657 49050657 1 + C A ACC 49050657 + 49050637 49050677 41 TGGGCCCAGTGTCTACCCTGCCCTCTCTGCACGGGAAGCAG TGGGCCCAGTGTCTACCCTGACCTCTCTGCACGGGAAGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR6 ENSG00000178252 CDS Human protein_coding chr3:49050657 chr3:49050657 nonsynonymous SNV 0.504 0 21 hm5C_associated_SNPs_597 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_597 DeepMRMD:1;iRNA_m5C:1 598 chr5 73981246 73981246 1 + C T ACC 73981246 + 73981226 73981266 41 CGTCTCGGCCAAGCCGGGGCCGGCGCTGTGGCCCCTGCCGC CGTCTCGGCCAAGCCGGGGCTGGCGCTGTGGCCCCTGCCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HEXB ENSG00000049860 CDS Human protein_coding chr5:73981246 chr5:73981246 nonsynonymous SNV 0.070 1 21 hm5C_associated_SNPs_598 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_598 DeepMRMD:1;iRNA_m5C:1 599 chrX 53112257 53112257 1 + C T ACC 53112257 + 53112237 53112277 41 GCAGGAGGCGGCGGCGGCGGCGGAGGAGGAAGCAGAGGAAG GCAGGAGGCGGCGGCGGCGGTGGAGGAGGAAGCAGAGGAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53112257 chrX:53112257 nonsynonymous SNV 0.613 2 21 hm5C_associated_SNPs_599 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_599 DeepMRMD:1;iRNA_m5C:1 600 chr11 118495742 118495742 1 + C T ACC 118495742 + 118495722 118495762 41 GCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTAC GCATGATTCCAGCAGGGGGCTGAGCCCCTGGGCCCCCCTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495742 chr11:118495742 stopgain 0.995 0 21 hm5C_associated_SNPs_600 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_600 DeepMRMD:1;iRNA_m5C:1 601 chr1 248039251 248039251 1 + C T ACC 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACTGCCGACCTGCGCAGTGTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039251 synonymous SNV . 0 21 hm5C_associated_SNPs_601 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_601 DeepMRMD:1;iRNA_m5C:1 602 chr12 56663999 56663999 1 + C G BLCA 56663999 + 56663979 56664019 41 ATGTTTTTTGATGAGGTTGTCAAACAGAATGTTGCTGCCTT ATGTTTTTTGATGAGGTTGTGAAACAGAATGTTGCTGCCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ10A ENSG00000135469 CDS Human protein_coding chr12:56663999 chr12:56663999 synonymous SNV . 0 21 hm5C_associated_SNPs_602 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_602 DeepMRMD:1;iRNA_m5C:1 603 chr11 68363567 68363567 1 + C T BLCA 68363567 + 68363547 68363587 41 GGTCTTGTTTTTCCTTAGCTCGGGGAGTACAGACAGTGAGG GGTCTTGTTTTTCCTTAGCTTGGGGAGTACAGACAGTGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363567 chr11:68363567 nonsynonymous SNV 0.938 3 21 hm5C_associated_SNPs_603 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_603 DeepMRMD:1;iRNA_m5C:1 604 chr8 104452461 104452461 1 + C T BLCA 104452461 + 104452441 104452481 41 GATCTGATGAAATGAACATTCGCCTGTGGAAAGCTAATGCT GATCTGATGAAATGAACATTTGCCTGTGGAAAGCTAATGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104452461 chr8:104452461 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_604 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_604 DeepMRMD:1;iRNA_m5C:1 605 chr2 32724730 32724730 1 + C T BLCA 32724730 + 32724710 32724750 41 TATTTCTGCCGTGATAGAATCGGTTACATTTTTAGTGCACC TATTTCTGCCGTGATAGAATTGGTTACATTTTTAGTGCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32724730 chr2:32724730 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_605 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_605 DeepMRMD:1;iRNA_m5C:1 606 chr4 154245282 154245282 1 + C T BLCA 154245282 + 154245262 154245302 41 GAGATTATTATTACAGATTTCCATAATCATTCTGTCAAGGT GAGATTATTATTACAGATTTTCATAATCATTCTGTCAAGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154245282 chr4:154245282 synonymous SNV . 0 21 hm5C_associated_SNPs_606 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_606 DeepMRMD:1;iRNA_m5C:1 607 chr1 22307567 22307567 1 + C T BLCA 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTATGACCGTGCTGTGAAGGAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307567 synonymous SNV . 0 21 hm5C_associated_SNPs_607 0 0 0 0 2 unknown 1 0 1 1 hm5C_site_607 DeepMRMD:1;iRNA_m5C:1 608 chr1 65895720 65895720 1 + C A BLCA 65895720 + 65895700 65895740 41 GATTTCCTGTTATTCTTGCTCGTGTGGCTGTGGTAAGTTTT GATTTCCTGTTATTCTTGCTAGTGTGGCTGTGGTAAGTTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LEPROT ENSG00000213625 CDS Human protein_coding chr1:65895720 chr1:65895720 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_608 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_608 DeepMRMD:1;iRNA_m5C:1 609 chr5 179151700 179151700 1 + C T BLCA 179151700 + 179151680 179151720 41 ATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAG ATAAGAAAACTGATGCACCTTAACCGGATGTGAAGGAAGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151700 chr5:179151700 stopgain 0.955 1 21 hm5C_associated_SNPs_609 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_609 DeepMRMD:1;iRNA_m5C:1 610 chr14 21556227 21556227 1 + C T BLCA 21556227 + 21556207 21556247 41 AGCAGCACTCCCACCCTGGCCAGTCGAGGGATCTTAGGGCT AGCAGCACTCCCACCCTGGCTAGTCGAGGGATCTTAGGGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21556227 chr14:21556227 synonymous SNV . 0 21 hm5C_associated_SNPs_610 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_610 DeepMRMD:1;iRNA_m5C:1 611 chrX 57515266 57515266 1 + C G BLCA 57515266 + 57515246 57515286 41 AAAGGACTCCCTTTAGGCATCCAGGTTGTGGCTGGACCCTT AAAGGACTCCCTTTAGGCATGCAGGTTGTGGCTGGACCCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57515266 chrX:57515266 nonsynonymous SNV 0.956 3 21 hm5C_associated_SNPs_611 0 0 0 0 1 nucleus 1 0 1 1 hm5C_site_611 DeepMRMD:1;iRNA_m5C:1 612 chr10 118314751 118314751 1 + C T BLCA 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCGATTGGACCCCAGTGATGCCAAATTTGTGGATGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314751 synonymous SNV . 0 21 hm5C_associated_SNPs_612 0 0 0 0 1 unknown 1 0 1 1 hm5C_site_612 DeepMRMD:1;iRNA_m5C:1 613 chr3 12616427 12616427 1 + C G BLCA 12616427 + 12616407 12616447 41 GAGGAGATTTGGGATTCTCTCCAATTGCAATCACACGTACT GAGGAGATTTGGGATTCTCTGCAATTGCAATCACACGTACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12616427 chr3:12616427 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_613 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_613 DeepMRMD:1;iRNA_m5C:1 614 chr3 33877665 33877665 1 + C T BLCA 33877665 + 33877645 33877685 41 ATGACTTCATTTATCATGATCGAGTTCCAGACCTTAAAGAT ATGACTTCATTTATCATGATTGAGTTCCAGACCTTAAAGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33877665 chr3:33877665 stopgain 0.998 1 21 hm5C_associated_SNPs_614 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_614 DeepMRMD:1;iRNA_m5C:1 615 chr22 42042976 42042976 1 + C T BLCA 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCTCTCAAGCCTTCTCCAATAAAGCTCTATCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042976 nonsynonymous SNV 0.227 0 21 hm5C_associated_SNPs_615 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_615 DeepMRMD:1;iRNA_m5C:1 616 chr11 67052451 67052451 1 + C T BLCA 67052451 + 67052431 67052471 41 TGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGG TGGCGGGGCGAGGGCGAGGCTCCGGTAAGGAGCCCGTGCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052451 chr11:67052451 synonymous SNV . 0 21 hm5C_associated_SNPs_616 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_616 DeepMRMD:1;iRNA_m5C:1 617 chr9 131198051 131198051 1 + C A BLCA 131198051 + 131198031 131198071 41 GCTCAGTGACACGGAGACATCCTCTCCATGGGATGATGACA GCTCAGTGACACGGAGACATACTCTCCATGGGATGATGACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131198051 chr9:131198051 nonsynonymous SNV 0.986 5 21 hm5C_associated_SNPs_617 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_617 DeepMRMD:1;iRNA_m5C:1 618 chr1 220921997 220921997 1 + C T BLCA 220921997 + 220921977 220922017 41 TGGGGACTGTCGCCTGGCGCCGCGCATGGCCCAGGCGGCGC TGGGGACTGTCGCCTGGCGCTGCGCATGGCCCAGGCGGCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220921997 chr1:220921997 nonsynonymous SNV 0.007 1 21 hm5C_associated_SNPs_618 0 0 0 0 0 nucleus 1 0 1 1 hm5C_site_618 DeepMRMD:1;iRNA_m5C:1 619 chr1 220970027 220970027 1 + C T BLCA 220970027 + 220970007 220970047 41 GGCAGGGACTGTGGCGAGGCCACCGCCCAGTGGATAACCAG GGCAGGGACTGTGGCGAGGCTACCGCCCAGTGGATAACCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970027 chr1:220970027 synonymous SNV . 0 21 hm5C_associated_SNPs_619 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_619 DeepMRMD:1;iRNA_m5C:1 620 chr19 56172438 56172438 1 + C T BLCA 56172438 + 56172418 56172458 41 CCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTCT CCAGCCACTGCTCTTCTCCCTACCATGACCCCTGACGGTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172438 chr19:56172438 synonymous SNV . 0 21 hm5C_associated_SNPs_620 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_620 DeepMRMD:1;iRNA_m5C:1 621 chr1 22336318 22336318 1 + C G BLCA 22336318 + 22336298 22336338 41 GGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGAC GGAAGCCCACGGTGTTCACTGGAGTCTCCGCCTTCATCGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336318 chr1:22336318 nonsynonymous SNV 0.141 3 21 hm5C_associated_SNPs_621 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_621 DeepMRMD:1;iRNA_m5C:1 622 chr7 100151721 100151721 1 + C T BLCA 100151721 + 100151701 100151741 41 TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCACGCTCGGAC TCCTTCTCCTCCAAGCCCGTTAGTCAGTCTCACGCTCGGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100151721 chr7:100151721 synonymous SNV . 0 21 hm5C_associated_SNPs_622 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_622 DeepMRMD:1;iRNA_m5C:1 623 chr11 404268 404268 1 + C T BLCA 404268 + 404248 404288 41 GAAGTCCTCCCGGGCAGCATCCAGCCTCCTGGCCAACCTGT GAAGTCCTCCCGGGCAGCATTCAGCCTCCTGGCCAACCTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:404268 chr11:404268 nonsynonymous SNV 0.981 2 21 hm5C_associated_SNPs_623 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_623 DeepMRMD:1;iRNA_m5C:1 624 chr11 61404261 61404261 1 + C G BLCA 61404261 + 61404241 61404281 41 GGGAGCAGACAATGTGAACTCCAAGCAGATGCAGCAGATCC GGGAGCAGACAATGTGAACTGCAAGCAGATGCAGCAGATCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404261 chr11:61404261 . . 0 21 hm5C_associated_SNPs_624 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_624 DeepMRMD:1;iRNA_m5C:1 625 chr11 111959637 111959637 1 + C T BLCA 111959637 + 111959617 111959657 41 TGGACTAGCGAGAGGGTTGTCAGTGTTTTGCTCCTGGGTCT TGGACTAGCGAGAGGGTTGTTAGTGTTTTGCTCCTGGGTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SDHD ENSG00000204370;ENSG00000255292 CDS Human other chr11:111959637 chr11:111959637 synonymous SNV . 0 21 hm5C_associated_SNPs_625 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_625 DeepMRMD:1;iRNA_m5C:1 626 chrX 153688732 153688732 1 + C T BLCA 153688732 + 153688712 153688752 41 GCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCT GCGGGCCCATGTCACGGGGCTCGTCGAGGACAACGCTCGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688732 chrX:153688732 nonsynonymous SNV 0.050 3 21 hm5C_associated_SNPs_626 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_626 DeepMRMD:1;iRNA_m5C:1 627 chr19 5691353 5691353 1 + C T BLCA 5691353 + 5691333 5691373 41 CTGACCAAACACACCAAGTTCGTGCGGGACATGATTCGGGA CTGACCAAACACACCAAGTTTGTGCGGGACATGATTCGGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691353 chr19:5691353 synonymous SNV . 0 21 hm5C_associated_SNPs_627 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_627 DeepMRMD:1;iRNA_m5C:1 628 chr10 17276805 17276805 1 + C T BLCA 17276805 + 17276785 17276825 41 CTCACCTGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC CTCACCTGTGAAGTGGATGCTCTTAAAGGAACCGTGAGTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276805 chr10:17276805 synonymous SNV . 0 21 hm5C_associated_SNPs_628 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_628 DeepMRMD:1;iRNA_m5C:1 629 chr1 22307603 22307603 1 + C T BLCA 22307603 + 22307583 22307623 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCT GAGGGCCCCGAGCAGGTGATTCCCATCAACTCTGGGGACCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307603 chr1:22307603 synonymous SNV . 0 21 hm5C_associated_SNPs_629 0 0 0 0 2 unknown 1 0 1 1 hm5C_site_629 DeepMRMD:1;iRNA_m5C:1 630 chr3 141163632 141163632 1 + C T BLCA 141163632 + 141163612 141163652 41 TGTTGCTGATCCTGGAGGATCACTGAGCAAAACCACAAATA TGTTGCTGATCCTGGAGGATTACTGAGCAAAACCACAAATA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZBTB38 ENSG00000177311 CDS Human protein_coding chr3:141163632 chr3:141163632 nonsynonymous SNV 0.090 2 21 hm5C_associated_SNPs_630 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_630 DeepMRMD:1;iRNA_m5C:1 631 chr14 39649941 39649941 1 + C T BLCA 39649941 + 39649921 39649961 41 GGAAGAGGAAAAGGAAATAGCGATTGTTCATAGTGATGCAG GGAAGAGGAAAAGGAAATAGTGATTGTTCATAGTGATGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39649941 chr14:39649941 nonsynonymous SNV 0.914 1 21 hm5C_associated_SNPs_631 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_631 DeepMRMD:1;iRNA_m5C:1 632 chrX 54838641 54838641 1 + C G BLCA 54838641 + 54838621 54838661 41 AGAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC AGAATGACCACTTGTACATTGTTCTCAGCACCTTAGAGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838641 chrX:54838641 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_632 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_632 DeepMRMD:1;iRNA_m5C:1 633 chr6 53785428 53785428 1 + C G BLCA 53785428 + 53785408 53785448 41 TCTTTGTCACTGCAGAGAATCTGCCTCGCTGTGGTGCACTG TCTTTGTCACTGCAGAGAATGTGCCTCGCTGTGGTGCACTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53785428 chr6:53785428 nonsynonymous SNV 0.975 1 21 hm5C_associated_SNPs_633 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_633 DeepMRMD:1;iRNA_m5C:1 634 chr6 7579653 7579653 1 + C T BLCA 7579653 + 7579633 7579673 41 CCAGTTCAAAGCGAAGCTTGCGAGCCTGGAGGAGCTGAAGA CCAGTTCAAAGCGAAGCTTGTGAGCCTGGAGGAGCTGAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579653 chr6:7579653 nonsynonymous SNV 0.781 0 21 hm5C_associated_SNPs_634 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_634 DeepMRMD:1;iRNA_m5C:1 635 chr15 45003787 45003787 1 + C G BLCA 45003787 + 45003767 45003807 41 CTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATC CTGTGCTCGCGCTACTCTCTGTTTCTGGCCTGGAGGCTATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B2M ENSG00000166710 CDS Human protein_coding chr15:45003787 chr15:45003787 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_635 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_635 DeepMRMD:1;iRNA_m5C:1 636 chrX 51488275 51488275 1 + C G BLCA 51488275 + 51488255 51488295 41 TCCTAGTAACCTCTGCCATTCTGGACGCACGTTTGATGTTC TCCTAGTAACCTCTGCCATTGTGGACGCACGTTTGATGTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSPT2 ENSG00000189369 CDS Human protein_coding chrX:51488275 chrX:51488275 nonsynonymous SNV 0.996 2 21 hm5C_associated_SNPs_636 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_636 DeepMRMD:1;iRNA_m5C:1 637 chr1 22333440 22333440 1 + C A BLCA 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333440 synonymous SNV . 0 21 hm5C_associated_SNPs_637 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_637 DeepMRMD:1;iRNA_m5C:1 638 chr16 28847774 28847774 1 + C T BLCA 28847774 + 28847754 28847794 41 CCCACTGCCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCT CCCACTGCCTCCCCAGCTCTTAGTGACCCCGACTGTCTCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847774 chr16:28847774 synonymous SNV . 0 21 hm5C_associated_SNPs_638 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_638 DeepMRMD:1;iRNA_m5C:1 639 chr17 40818472 40818472 1 + C G BLCA 40818472 + 40818452 40818492 41 GCCCACCGGGTCAGCGGGCTCATGATGGCCAACCACACCAG GCCCACCGGGTCAGCGGGCTGATGATGGCCAACCACACCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818472 chr17:40818472 synonymous SNV . 0 21 hm5C_associated_SNPs_639 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_639 DeepMRMD:1;iRNA_m5C:1 640 chrX 123190075 123190075 1 + C T BLCA 123190075 + 123190055 123190095 41 CAGTAGCAGCTGGAGAATTTCTCTACAAAAAGTAAATCTAT CAGTAGCAGCTGGAGAATTTTTCTACAAAAAGTAAATCTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123190075 chrX:123190075 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_640 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_640 DeepMRMD:1;iRNA_m5C:1 641 chr11 61404392 61404392 1 + C T BLCA 61404392 + 61404372 61404412 41 CTCTGGAGAAACTGCTGCCTCGCATCTGGGAGAATGTGGGC CTCTGGAGAAACTGCTGCCTTGCATCTGGGAGAATGTGGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404392 chr11:61404392 . . 0 21 hm5C_associated_SNPs_641 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_641 DeepMRMD:1;iRNA_m5C:1 642 chr6 7581110 7581110 1 + C G BLCA 7581110 + 7581090 7581130 41 TCACGCGGTTCCAGAACTCTCTGAAAGAGCTGCAGCTGCAG TCACGCGGTTCCAGAACTCTGTGAAAGAGCTGCAGCTGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581110 chr6:7581110 nonsynonymous SNV 0.936 0 21 hm5C_associated_SNPs_642 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_642 DeepMRMD:1;iRNA_m5C:1 643 chr1 984698 984698 1 + C T BLCA 984698 + 984678 984718 41 GGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCACC GGCACCGCCTGGAGCTGTCCTGGCACTGGCGCCGGGGCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984698 chr1:984698 nonsynonymous SNV 0.140 4 21 hm5C_associated_SNPs_643 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_643 DeepMRMD:1;iRNA_m5C:1 644 chr1 198231746 198231746 1 + C G BLCA 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTGCTGATTGCATGAAAGAAATAGATCTTCTTAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231746 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_644 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_644 DeepMRMD:1;iRNA_m5C:1 645 chr20 30898670 30898670 1 + C T BLCA 30898670 + 30898650 30898690 41 AATTCCAGGAAGAGATTGCTCGGCTCAAGGCCCAGCTGGAA AATTCCAGGAAGAGATTGCTTGGCTCAAGGCCCAGCTGGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898670 chr20:30898670 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_645 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_645 DeepMRMD:1;iRNA_m5C:1 646 chr7 44804952 44804952 1 + C T BLCA 44804952 + 44804932 44804972 41 AGCTCTGACTATGAGGAGATCACCATCGACCCCACGTGCAG AGCTCTGACTATGAGGAGATTACCATCGACCCCACGTGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44804952 chr7:44804952 synonymous SNV . 0 21 hm5C_associated_SNPs_646 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_646 DeepMRMD:1;iRNA_m5C:1 647 chr9 91930099 91930099 1 + C T BLCA 91930099 + 91930079 91930119 41 TAACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAG TAACAGGCATGTTATGTTACTCAGAGAACTTTCCAAACAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930099 chr9:91930099 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_647 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_647 DeepMRMD:1;iRNA_m5C:1 648 chr17 28788910 28788910 1 + C T BLCA 28788910 + 28788890 28788930 41 TTCAGGTTCACAAGGGAGTTCATGGATTTGTTAAAGATAAG TTCAGGTTCACAAGGGAGTTTATGGATTTGTTAAAGATAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28788910 chr17:28788910 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_648 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_648 DeepMRMD:1;iRNA_m5C:1 649 chr7 130021505 130021505 1 + C T BLCA 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021505 nonsynonymous SNV 0.248 0 21 hm5C_associated_SNPs_649 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_649 DeepMRMD:1;iRNA_m5C:1 650 chr6 26204978 26204978 1 + C T BLCA 26204978 + 26204958 26204998 41 GCATTACCAAGCCTGCCATCCGGCGCCTTGCTCGTCGCGGG GCATTACCAAGCCTGCCATCTGGCGCCTTGCTCGTCGCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIST1H4E ENSG00000198518 CDS Human other chr6:26204978 chr6:26204978 nonsynonymous SNV 0.019 0 21 hm5C_associated_SNPs_650 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_650 DeepMRMD:1;iRNA_m5C:1 651 chr14 101419750 101419750 1 + C T BLCA 101419750 + 101419730 101419770 41 AATACTACGTGTCTGAAACTCTGAGGTCCAACAGAAAACAT AATACTACGTGTCTGAAACTTTGAGGTCCAACAGAAAACAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419750 chr14:101419750 . . 0 21 hm5C_associated_SNPs_651 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_651 DeepMRMD:1;iRNA_m5C:1 652 chr10 101515429 101515429 1 + C G BLCA 101515429 + 101515409 101515449 41 ACTTTCTTGCTCAGAATATTCCCTAAAGGTAACAGATGTGA ACTTTCTTGCTCAGAATATTGCCTAAAGGTAACAGATGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515429 chr10:101515429 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_652 0 0 1 1 1 Ribosome 1 0 1 1 hm5C_site_652 DeepMRMD:1;iRNA_m5C:1 653 chr19 17450306 17450306 1 + C T BLCA 17450306 + 17450286 17450326 41 CCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTC CCGTGACGTGCTGGAGACCCTAGTCGACCTGGCCGGATTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450306 chr19:17450306 nonsynonymous SNV 0.911 0 21 hm5C_associated_SNPs_653 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_653 DeepMRMD:1;iRNA_m5C:1 654 chr5 132427046 132427046 1 + C T BLCA 132427046 + 132427026 132427066 41 AGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGGAAGAG AGGAGCCAATGGAAACAGATTAGAATGCAAAGGAGGAAGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427046 chr5:132427046 stopgain 0.999 1 21 hm5C_associated_SNPs_654 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_654 DeepMRMD:1;iRNA_m5C:1 655 chr19 42796593 42796593 1 + C T BLCA 42796593 + 42796573 42796613 41 TCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGCT TCGCTGGGGCCCAGCGGCCCTGCCTTCGTGCAGCCCCTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796593 chr19:42796593 synonymous SNV . 0 21 hm5C_associated_SNPs_655 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_655 DeepMRMD:1;iRNA_m5C:1 656 chr11 63996766 63996766 1 + C T BLCA 63996766 + 63996746 63996786 41 CAGCCCCTGCTGTTGGGCATCGCCCGAAATGAGACCAGTGC CAGCCCCTGCTGTTGGGCATTGCCCGAAATGAGACCAGTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996766 chr11:63996766 synonymous SNV . 0 21 hm5C_associated_SNPs_656 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_656 DeepMRMD:1;iRNA_m5C:1 657 chr6 44219877 44219877 1 + C G BLCA 44219877 + 44219857 44219897 41 TGATGGGAAGAGCCTGGTCTCAGTTACCAAGGAGGGTCTGG TGATGGGAAGAGCCTGGTCTGAGTTACCAAGGAGGGTCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219877 chr6:44219877 stopgain 0.994 0 21 hm5C_associated_SNPs_657 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_657 DeepMRMD:1;iRNA_m5C:1 658 chr3 179371085 179371085 1 + C T BLCA 179371085 + 179371065 179371105 41 AAGATGGCTGCAGGAGACATCGGCGAGCTGCTAGTGCCCCA AAGATGGCTGCAGGAGACATTGGCGAGCTGCTAGTGCCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179371085 chr3:179371085 synonymous SNV . 0 21 hm5C_associated_SNPs_658 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_658 DeepMRMD:1;iRNA_m5C:1 659 chr3 33906752 33906752 1 + C T BLCA 33906752 + 33906732 33906772 41 TAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACC TAGCCTACTAAGCCCCAGCCTCCAGCCAGGCCTCCACCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906752 chr3:33906752 synonymous SNV . 0 21 hm5C_associated_SNPs_659 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_659 DeepMRMD:1;iRNA_m5C:1 660 chr1 214819612 214819612 1 + C G BLCA 214819612 + 214819592 214819632 41 TCAGAACTAGACAAGTTACTCTCTTCATTTAAAAGTCTGTT TCAGAACTAGACAAGTTACTGTCTTCATTTAAAAGTCTGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214819612 chr1:214819612 synonymous SNV . 0 21 hm5C_associated_SNPs_660 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_660 DeepMRMD:1;iRNA_m5C:1 661 chr2 173352763 173352763 1 + C T BLCA 173352763 + 173352743 173352783 41 TGAACTGCTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA TGAACTGCTTTTATCGGTCTTGGGGTAAGTGTTTGTGTTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173352763 chr2:173352763 nonsynonymous SNV 0.952 1 21 hm5C_associated_SNPs_661 0 0 1 0 3 Nucleus 1 0 1 1 hm5C_site_661 DeepMRMD:1;iRNA_m5C:1 662 chr8 145697780 145697780 1 + C G BLCA 145697780 + 145697760 145697800 41 GGGCCTCCCGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG GGGCCTCCCGAGCGCCTGGCGGTGAGGCAGGGCCCAGAAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145697780 chr8:145697780 synonymous SNV . 0 21 hm5C_associated_SNPs_662 0 0 1 0 2 nucleolus 1 0 1 1 hm5C_site_662 DeepMRMD:1;iRNA_m5C:1 663 chr1 46073334 46073334 1 + C A BLCA 46073334 + 46073314 46073354 41 CAGTTTCTGGAACTGATGTCCAAGAAGAGTGCAGAGAAAAA CAGTTTCTGGAACTGATGTCAAAGAAGAGTGCAGAGAAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46073334 chr1:46073334 nonsynonymous SNV 0.005 2 21 hm5C_associated_SNPs_663 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_663 DeepMRMD:1;iRNA_m5C:1 664 chr1 153724860 153724860 1 + C T BLCA 153724860 + 153724840 153724880 41 AAGATATTATCCATAATCCTCAGGCCTTGAGTCCTCAGTTC AAGATATTATCCATAATCCTTAGGCCTTGAGTCCTCAGTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout INTS3 ENSG00000143624 CDS Human protein_coding chr1:153724860 chr1:153724860 stopgain 1.000 1 21 hm5C_associated_SNPs_664 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_664 DeepMRMD:1;iRNA_m5C:1 665 chr1 39898725 39898725 1 + C G BLCA 39898725 + 39898705 39898745 41 GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTCGACA GTTTACTTTTCAAAGGCTTTGTCCATTGACATTATTCGACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39898725 chr1:39898725 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_665 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_665 DeepMRMD:1;iRNA_m5C:1 666 chr16 89628100 89628100 1 + C T BLCA 89628100 + 89628080 89628120 41 TGCAGCGGCTGAAGGAGTACCGCTCCAAACTCATCCTCTTC TGCAGCGGCTGAAGGAGTACTGCTCCAAACTCATCCTCTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628100 chr16:89628100 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_666 0 0 1 0 3 Cytosol 1 0 1 1 hm5C_site_666 DeepMRMD:1;iRNA_m5C:1 667 chr14 75746726 75746726 1 + C T BLCA 75746726 + 75746706 75746746 41 ACCAGAGCCCCTCACCCTTTCGGAGTCCCCGCCCCCTCCGC ACCAGAGCCCCTCACCCTTTTGGAGTCCCCGCCCCCTCCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122269;BS-seq with improved protocol;Testis;Control FOS ENSG00000170345 CDS Human protein_coding chr14:75746726 chr14:75746726 nonsynonymous SNV 0.883 1 21 hm5C_associated_SNPs_667 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_667 DeepMRMD:1;iRNA_m5C:1 668 chr11 69462886 69462886 1 + C T BLCA 69462886 + 69462866 69462906 41 TACCGCCTCACACGCTTCCTCTCCAGAGTGATCAAGTGTGA TACCGCCTCACACGCTTCCTTTCCAGAGTGATCAAGTGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCND1 ENSG00000110092 CDS Human protein_coding chr11:69462886 chr11:69462886 synonymous SNV . 0 21 hm5C_associated_SNPs_668 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_668 DeepMRMD:1;iRNA_m5C:1 669 chr19 39208572 39208572 1 + C T BLCA 39208572 + 39208552 39208592 41 CCTGCCCTGCCCCAGGACATCAACAATGGCTGGCAGCACTT CCTGCCCTGCCCCAGGACATTAACAATGGCTGGCAGCACTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39208572 chr19:39208572 synonymous SNV . 0 21 hm5C_associated_SNPs_669 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_669 DeepMRMD:1;iRNA_m5C:1 670 chr1 9305294 9305294 1 + C T BLCA 9305294 + 9305274 9305314 41 ACTGTGCAGAGCACAAGGATCAGTTCCTGCAGCTGAGCCAG ACTGTGCAGAGCACAAGGATTAGTTCCTGCAGCTGAGCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control H6PD ENSG00000049239 CDS Human protein_coding chr1:9305294 chr1:9305294 stopgain 0.506 1 21 hm5C_associated_SNPs_670 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_670 DeepMRMD:1;iRNA_m5C:1 671 chr6 37280749 37280749 1 + C T BLCA 37280749 + 37280729 37280769 41 TCTCAAGACATGCTGCGAAGCATTGAGGCTGACAGCTTTTG TCTCAAGACATGCTGCGAAGTATTGAGGCTGACAGCTTTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37280749 chr6:37280749 synonymous SNV . 0 21 hm5C_associated_SNPs_671 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_671 DeepMRMD:1;iRNA_m5C:1 672 chr17 4859385 4859385 1 + C A BLCA 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA GTTGAGAAGAAGGCCTGCAAATGTCTGCTGCTGAAGGTCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859385 nonsynonymous SNV 0.973 2 21 hm5C_associated_SNPs_672 0 0 1 0 2 nucleus 1 0 1 1 hm5C_site_672 DeepMRMD:1;iRNA_m5C:1 673 chr15 22993125 22993125 1 + C T BLCA 22993125 + 22993105 22993145 41 CGGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGA CGGGAGGTGGGGAACGCCATTCTCTTCTGCCTGCTCATCGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993125 chr15:22993125 synonymous SNV . 0 21 hm5C_associated_SNPs_673 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_673 DeepMRMD:1;iRNA_m5C:1 674 chr6 33657075 33657075 1 + C T BLCA 33657075 + 33657055 33657095 41 CCTCATCTGCTTCTCCATCGCGGCCCTGTTCACCAAGCGCT CCTCATCTGCTTCTCCATCGTGGCCCTGTTCACCAAGCGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33657075 chr6:33657075 nonsynonymous SNV 0.239 1 21 hm5C_associated_SNPs_674 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_674 DeepMRMD:1;iRNA_m5C:1 675 chr10 118314780 118314780 1 + C T BLCA 118314780 + 118314760 118314800 41 ATTTGTGGATGTAATTCACACGGATGGTGCCCCCATAGTCC ATTTGTGGATGTAATTCACATGGATGGTGCCCCCATAGTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314780 chr10:118314780 nonsynonymous SNV 0.919 5 21 hm5C_associated_SNPs_675 1 0 0 0 1 unknown 1 0 1 1 hm5C_site_675 DeepMRMD:1;iRNA_m5C:1 Pancreatic lipase deficiency Pancreatic lipase deficiency 676 chr13 114541062 114541062 1 + G A BLCA 114541062 - 114541042 114541082 41 CAGCGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG CAGCGGCTTCGAGCTCTCCTTTGATGGCAGGACCTGCCAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541062 chr13:114541062 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_676 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_676 DeepMRMD:1;iRNA_m5C:1 677 chr5 172386963 172386963 1 + C T BLCA 172386963 + 172386943 172386983 41 TCACACGTGCGCAGGAAGATCATGTCATCCCCGCTCTCCAA TCACACGTGCGCAGGAAGATTATGTCATCCCCGCTCTCCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172386963 chr5:172386963 synonymous SNV . 0 21 hm5C_associated_SNPs_677 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_677 DeepMRMD:1;iRNA_m5C:1 678 chr4 5733343 5733343 1 + C T BLCA 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCAGCCGCACCTTTCTCCGGGTGAACGCCTTCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733343 synonymous SNV . 0 21 hm5C_associated_SNPs_678 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_678 DeepMRMD:1;iRNA_m5C:1 679 chr17 48153054 48153054 1 + C G BLCA 48153054 + 48153034 48153074 41 GCTGTCTTCCACGGCTTCTTCTCCATGCCCGAGATGCGCTG GCTGTCTTCCACGGCTTCTTGTCCATGCCCGAGATGCGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153054 chr17:48153054 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_679 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_679 DeepMRMD:1;iRNA_m5C:1 680 chr5 43649344 43649344 1 + C G BLCA 43649344 + 43649324 43649364 41 TGGCTGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACC TGGCTGGCATTGTGGGGTATGATACCGTCTGGGGAGTGACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43649344 chr5:43649344 nonsynonymous SNV 0.290 3 21 hm5C_associated_SNPs_680 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_680 DeepMRMD:1;iRNA_m5C:1 681 chr13 25670388 25670388 1 + C T BLCA 25670388 + 25670368 25670408 41 CCTCGCTCTACGTGGGGGACCTCCACCCCGACGTGACTGAG CCTCGCTCTACGTGGGGGACTTCCACCCCGACGTGACTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PABPC3 ENSG00000151846 CDS Human protein_coding chr13:25670388 chr13:25670388 nonsynonymous SNV 0.288 3 21 hm5C_associated_SNPs_681 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_681 DeepMRMD:1;iRNA_m5C:1 682 chr16 28950000 28950000 1 + C A BLCA 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTACCAGTCCTATGAGGATATGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950000 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_682 0 0 0 0 3 exosome 1 0 1 1 hm5C_site_682 DeepMRMD:1;iRNA_m5C:1 683 chr3 128973917 128973917 1 + C T BLCA 128973917 + 128973897 128973937 41 AGCTCTGCCCTCGTGTCTTCCTTGGTGTGTAGTTGCTGCTG AGCTCTGCCCTCGTGTCTTCTTTGGTGTGTAGTTGCTGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973917 chr3:128973917 synonymous SNV . 0 21 hm5C_associated_SNPs_683 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_683 DeepMRMD:1;iRNA_m5C:1 684 chr14 56119741 56119741 1 + C G BLCA 56119741 + 56119721 56119761 41 CTATTCTTTTTAAGGATCTTCAAGAAGAAAATGAATCTTTA CTATTCTTTTTAAGGATCTTGAAGAAGAAAATGAATCTTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56119741 chr14:56119741 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_684 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_684 DeepMRMD:1;iRNA_m5C:1 685 chr1 155029461 155029461 1 + C A BLCA 155029461 + 155029441 155029481 41 AGCATCCTGGGAGTCGCCTCCTCCATAGCCCATGAGTTGGG AGCATCCTGGGAGTCGCCTCATCCATAGCCCATGAGTTGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155029461 chr1:155029461 synonymous SNV . 0 21 hm5C_associated_SNPs_685 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_685 DeepMRMD:1;iRNA_m5C:1 686 chr1 90473035 90473035 1 + C A BLCA 90473035 + 90473015 90473055 41 TGGTGGTCGATTTGAGAGCTCCTACCGGAATAGCCTTGACT TGGTGGTCGATTTGAGAGCTACTACCGGAATAGCCTTGACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90473035 chr1:90473035 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_686 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_686 DeepMRMD:1;iRNA_m5C:1 687 chr19 39220041 39220041 1 + C G BLCA 39220041 + 39220021 39220061 41 CCTCGACTACAAGTCCTTCTCCACGGCCTTGTATGGCGAGA CCTCGACTACAAGTCCTTCTGCACGGCCTTGTATGGCGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39220041 chr19:39220041 nonsynonymous SNV 0.986 4 21 hm5C_associated_SNPs_687 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_687 DeepMRMD:1;iRNA_m5C:1 688 chr15 85189506 85189506 1 + G C BLCA 85189506 - 85189486 85189526 41 TGGCCTAGGGTGGCCGTCTTCTCCACATTGGCACCCGGAGT TGGCCTAGGGTGGCCGTCTTGTCCACATTGGCACCCGGAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR73 ENSG00000177082 CDS Human protein_coding chr15:85189506 chr15:85189506 nonsynonymous SNV 0.088 0 21 hm5C_associated_SNPs_688 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_688 DeepMRMD:1;iRNA_m5C:1 689 chr16 19184812 19184812 1 + C A BLCA 19184812 + 19184792 19184832 41 GGACCTGCCGGCACTGCTGTCAGAAGTGCTACGAGTCCAGC GGACCTGCCGGCACTGCTGTAAGAAGTGCTACGAGTCCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT17 ENSG00000103528 CDS Human protein_coding chr16:19184812 chr16:19184812 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_689 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_689 DeepMRMD:1;iRNA_m5C:1 690 chr16 84684521 84684521 1 + C T BLCA 84684521 + 84684501 84684541 41 GTGTCTCGGCCATACAAGATCAGCGAATCATCAAAGGTCTG GTGTCTCGGCCATACAAGATTAGCGAATCATCAAAGGTCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84684521 chr16:84684521 synonymous SNV . 0 21 hm5C_associated_SNPs_690 0 0 0 0 2 chromatin 1 0 1 1 hm5C_site_690 DeepMRMD:1;iRNA_m5C:1 691 chrX 153608140 153608140 1 + C G BLCA 153608140 + 153608120 153608160 41 CAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA CAGCTCGTCCGCCGCCTCCTGTTATAGCTTCTCTGGTGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608140 chrX:153608140 nonsynonymous SNV 0.023 2 21 hm5C_associated_SNPs_691 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_691 DeepMRMD:1;iRNA_m5C:1 692 chr19 7584339 7584339 1 + C A BLCA 7584339 + 7584319 7584359 41 TGGAGCCCGTCTCGGAGGATCTGGACCCCGACGCCGAAGCT TGGAGCCCGTCTCGGAGGATATGGACCCCGACGCCGAAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF358 ENSG00000198816 CDS Human protein_coding chr19:7584339 chr19:7584339 nonsynonymous SNV 0.298 1 21 hm5C_associated_SNPs_692 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_692 DeepMRMD:1;iRNA_m5C:1 693 chr12 57604652 57604652 1 + C G BLCA 57604652 + 57604632 57604672 41 CCCGGCTTCCTGGGCGACCGCTGCCAGTACCGTGAGTGAGC CCCGGCTTCCTGGGCGACCGGTGCCAGTACCGTGAGTGAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604652 chr12:57604652 synonymous SNV . 0 21 hm5C_associated_SNPs_693 0 0 1 0 1 Exosome 1 0 1 1 hm5C_site_693 DeepMRMD:1;iRNA_m5C:1 694 chr13 48936995 48936995 1 + C T BLCA 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTCACCTCGAACACCCAGGTGAGGTCAGAACAGGAGTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48936995 stopgain 0.957 1 21 hm5C_associated_SNPs_694 3 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_694 DeepMRMD:1;iRNA_m5C:1 Retinoblastoma Retinoblastoma 695 chr12 100995493 100995493 1 + C G BLCA 100995493 + 100995473 100995513 41 GTCAACTGATTGATGTTCTTCAAAACATGGTGAAAACATGC GTCAACTGATTGATGTTCTTGAAAACATGGTGAAAACATGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:100995493 chr12:100995493 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_695 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_695 DeepMRMD:1;iRNA_m5C:1 696 chr19 58352451 58352451 1 + C T BLCA 58352451 + 58352431 58352471 41 ATGACAGTGGAAACTTTCATCAGCACCAGAATGAGCACATT ATGACAGTGGAAACTTTCATTAGCACCAGAATGAGCACATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF587B ENSG00000269343 CDS Human protein_coding chr19:58352451 chr19:58352451 stopgain 0.042 0 21 hm5C_associated_SNPs_696 0 0 0 0 1 cytosol 1 0 1 1 hm5C_site_696 DeepMRMD:1;iRNA_m5C:1 697 chr22 32217507 32217507 1 + C G BLCA 32217507 + 32217487 32217527 41 GGGCCATCCGGAGAAGCCATCCAGATCCACCACCAGACCCG GGGCCATCCGGAGAAGCCATGCAGATCCACCACCAGACCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32217507 chr22:32217507 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_697 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_697 DeepMRMD:1;iRNA_m5C:1 698 chr12 113400499 113400499 1 + C G BLCA 113400499 + 113400479 113400519 41 AAGGACCAGCCCCTGCCTCTCTGCCCCCAGCCTATGCCCTG AAGGACCAGCCCCTGCCTCTGTGCCCCCAGCCTATGCCCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113400499 chr12:113400499 nonsynonymous SNV 0.497 3 21 hm5C_associated_SNPs_698 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_698 DeepMRMD:1;iRNA_m5C:1 699 chr14 103390064 103390064 1 + C T BLCA 103390064 + 103390044 103390084 41 CCAGCACTGACCCAGGCGGTCTCCAAACTCTGGGTCCCCAA CCAGCACTGACCCAGGCGGTTTCCAAACTCTGGGTCCCCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AMN ENSG00000166126 CDS Human protein_coding chr14:103390064 chr14:103390064 synonymous SNV . 0 21 hm5C_associated_SNPs_699 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_699 DeepMRMD:1;iRNA_m5C:1 700 chr9 95599746 95599746 1 + C T BRCA 95599746 + 95599726 95599766 41 TCCGCTGGGGCCGCTGGAGGCCCCGGGGCCTGAGTTTCCGG TCCGCTGGGGCCGCTGGAGGTCCCGGGGCCTGAGTTTCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599746 chr9:95599746 . . 0 21 hm5C_associated_SNPs_700 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_700 DeepMRMD:1;iRNA_m5C:1 701 chr3 63965690 63965690 1 + C T BRCA 63965690 + 63965670 63965710 41 CAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTCTT CAAAAGCAAAGGAGGCAGTGTAAGTGGAAGCAACCGTTCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63965690 chr3:63965690 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_701 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_701 DeepMRMD:1;iRNA_m5C:1 702 chr19 10200684 10200684 1 + C T BRCA 10200684 + 10200664 10200704 41 CAGTTTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCG CAGTTTGCCTGCTCCTCCTGTGACCACGTCTGGTGGCGCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200684 chr19:10200684 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_702 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_702 DeepMRMD:1;iRNA_m5C:1 703 chrX 105855830 105855830 1 + C T BRCA 105855830 + 105855810 105855850 41 CCTTCAGAAATAGAGCGCACCAGGAGAAACCAGAGAGGCCT CCTTCAGAAATAGAGCGCACTAGGAGAAACCAGAGAGGCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105855830 chrX:105855830 stopgain 0.968 0 21 hm5C_associated_SNPs_703 0 0 1 0 0 nucleus 1 0 1 1 hm5C_site_703 DeepMRMD:1;iRNA_m5C:1 704 chrY 10037867 10037867 1 + C T BRCA 10037867 + 10037847 10037887 41 TTGATCATCGACACTTCGAACGCACTTGCGGCCCGGGTTCC TTGATCATCGACACTTCGAATGCACTTGCGGCCCGGGTTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037867 chrY:10037867 . . 0 21 hm5C_associated_SNPs_704 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_704 DeepMRMD:1;iRNA_m5C:1 705 chr19 3151786 3151786 1 + C G BRCA 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCGCATGCCCACGACTGGCATCAACGAGTACTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151786 synonymous SNV . 0 21 hm5C_associated_SNPs_705 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_705 DeepMRMD:1;iRNA_m5C:1 706 chr12 105543489 105543489 1 + C T BRCA 105543489 + 105543469 105543509 41 CCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG CCAGATTGATTAAAGATATTTGATTTTTCAGGGAAATTAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105543489 chr12:105543489 stopgain 1.000 1 21 hm5C_associated_SNPs_706 0 0 1 0 2 unknown 1 0 1 1 hm5C_site_706 DeepMRMD:1;iRNA_m5C:1 707 chr17 66033483 66033483 1 + C T BRCA 66033483 + 66033463 66033503 41 CTTTTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAAT CTTTTCTCAAGGAAATGAGGTGTCGCAGAATAGAGGTCAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033483 chr17:66033483 nonsynonymous SNV 0.074 3 21 hm5C_associated_SNPs_707 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_707 DeepMRMD:1;iRNA_m5C:1 708 chr10 102763412 102763412 1 + C T BRCA 102763412 + 102763392 102763432 41 GACGCAGCTGTTTGGGGGCCCTGCCTCCTCCTCCTCCTCTT GACGCAGCTGTTTGGGGGCCTTGCCTCCTCCTCCTCCTCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102763412 chr10:102763412 nonsynonymous SNV 0.989 2 21 hm5C_associated_SNPs_708 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_708 DeepMRMD:1;iRNA_m5C:1 709 chr14 21967278 21967278 1 + G C BRCA 21967278 - 21967258 21967298 41 TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAACCA TAGTTTTTATTTCCTAGGTTGGTTCCACCAGTCATAAACCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control METTL3 ENSG00000165819 CDS Human protein_coding chr14:21967278 chr14:21967278 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_709 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_709 DeepMRMD:1;iRNA_m5C:1 710 chr17 43183002 43183002 1 + C T BRCA 43183002 + 43182982 43183022 41 CCTAGGTTGGACTGGTGCTACAATAACCAGTCACCAGTGCG CCTAGGTTGGACTGGTGCTATAATAACCAGTCACCAGTGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NMT1 ENSG00000136448 CDS Human protein_coding chr17:43183002 chr17:43183002 stopgain 0.993 1 21 hm5C_associated_SNPs_710 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_710 DeepMRMD:1;iRNA_m5C:1 711 chr7 142459748 142459748 1 + C T BRCA 142459748 + 142459728 142459768 41 AAGACTCTGAACAATGACATCATGTTAATCAAGCTCTCCTC AAGACTCTGAACAATGACATTATGTTAATCAAGCTCTCCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459748 chr7:142459748 synonymous SNV . 0 21 hm5C_associated_SNPs_711 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_711 DeepMRMD:1;iRNA_m5C:1 712 chr11 48164480 48164480 1 + C G BRCA 48164480 + 48164460 48164500 41 TTTTGTTTTAGATCCCCCTCCTCCAGATGGATCCCCTAATA TTTTGTTTTAGATCCCCCTCGTCCAGATGGATCCCCTAATA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48164480 chr11:48164480 nonsynonymous SNV 0.945 0 21 hm5C_associated_SNPs_712 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_712 DeepMRMD:1;iRNA_m5C:1 713 chr12 6619500 6619500 1 + C T BRCA 6619500 + 6619480 6619520 41 GATACAGAGTTATGTGTGTTCACTGTAAGGGCAGACCAACA GATACAGAGTTATGTGTGTTTACTGTAAGGGCAGACCAACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619500 chr12:6619500 . . 0 21 hm5C_associated_SNPs_713 0 0 1 1 0 unknown 1 0 1 1 hm5C_site_713 DeepMRMD:1;iRNA_m5C:1 714 chr15 44085898 44085898 1 + C G BRCA 44085898 + 44085878 44085918 41 CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGA CTCCCAGTGCCCCATCATCTGTACCCCCAGGGACTCGGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085898 chr15:44085898 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_714 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_714 DeepMRMD:1;iRNA_m5C:1 715 chr17 7481290 7481290 1 + C G BRCA 7481290 + 7481270 7481310 41 AGGATCCAAGGTGATTCCCTCTCCAAGGGGACATCAGTGCC AGGATCCAAGGTGATTCCCTGTCCAAGGGGACATCAGTGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA67 ENSG00000264772 ncRNA_exonic Human processed_transcript chr17:7481290 chr17:7481290 . . 0 21 hm5C_associated_SNPs_715 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_715 DeepMRMD:1;iRNA_m5C:1 716 chr19 49993282 49993282 1 + C T BRCA 49993282 + 49993262 49993302 41 TCTCACGGCCATGAGATCAACCCCATGCACCGCTCTGAGAC TCTCACGGCCATGAGATCAATCCCATGCACCGCTCTGAGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993282 chr19:49993282 . . 0 21 hm5C_associated_SNPs_716 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_716 DeepMRMD:1;iRNA_m5C:1 717 chr7 44047341 44047341 1 + G A BRCA 44047341 - 44047321 44047361 41 AAGGCGAGCGCGATCTCGCGCCCACACCCAGTGCTCTGGGT AAGGCGAGCGCGATCTCGCGTCCACACCCAGTGCTCTGGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDYE1 ENSG00000136206 CDS Human protein_coding chr7:44047341 chr7:44047341 nonsynonymous SNV 0.020 0 21 hm5C_associated_SNPs_717 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_717 DeepMRMD:1;iRNA_m5C:1 718 chrX 9661244 9661244 1 + C T BRCA 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG CGGTTTTGCAAGAATATGGATGGAAGATGGTGAGTTCTGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661244 nonsynonymous SNV 0.976 1 21 hm5C_associated_SNPs_718 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_718 DeepMRMD:1;iRNA_m5C:1 719 chr5 72187661 72187661 1 + C T BRCA 72187661 + 72187641 72187681 41 ATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAAC ATATTCAGATGCTAATGCCTTCACTGATCCAGAAATGGAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187661 chr5:72187661 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_719 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_719 DeepMRMD:1;iRNA_m5C:1 720 chr19 45406420 45406420 1 + C T BRCA 45406420 + 45406400 45406440 41 TGTGGCTTTGGCCTCACCATCGGCTGAGCCCTCCTGGCCCC TGTGGCTTTGGCCTCACCATTGGCTGAGCCCTCCTGGCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOMM40 ENSG00000130204 CDS Human protein_coding chr19:45406420 chr19:45406420 synonymous SNV . 0 21 hm5C_associated_SNPs_720 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_720 DeepMRMD:1;iRNA_m5C:1 721 chr15 91456118 91456118 1 + C A CESC 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACGTCCCAAAGGAGCCCCCCGTGCTGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456118 synonymous SNV . 0 21 hm5C_associated_SNPs_721 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_721 DeepMRMD:1;iRNA_m5C:1 722 chr6 7581095 7581095 1 + C T CESC 7581095 + 7581075 7581115 41 TGAAGGACCAGGATATCACGCGGTTCCAGAACTCTCTGAAA TGAAGGACCAGGATATCACGTGGTTCCAGAACTCTCTGAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581095 chr6:7581095 nonsynonymous SNV 0.012 2 21 hm5C_associated_SNPs_722 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_722 DeepMRMD:1;iRNA_m5C:1 723 chrX 73044044 73044044 1 + G A CESC 73044044 - 73044024 73044064 41 GTTATCTATTGTGTGCCAATCTCATTGCTAGGCATTGGGGA GTTATCTATTGTGTGCCAATTTCATTGCTAGGCATTGGGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044044 chrX:73044044 . . 0 21 hm5C_associated_SNPs_723 0 0 1 1 0 unknown 1 0 1 1 hm5C_site_723 DeepMRMD:1;iRNA_m5C:1 724 chr1 249142474 249142474 1 + C T CESC 249142474 + 249142454 249142494 41 CAAGCACCGGCGCACGCACACGGGCGAGAAGCCCTACCGCT CAAGCACCGGCGCACGCACATGGGCGAGAAGCCCTACCGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZNF672 ENSG00000171161 CDS Human protein_coding chr1:249142474 chr1:249142474 nonsynonymous SNV 0.866 3 21 hm5C_associated_SNPs_724 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_724 DeepMRMD:1;iRNA_m5C:1 725 chr7 22896271 22896271 1 + C T CESC 22896271 + 22896251 22896291 41 TAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAAGGA TAATCTGATTTTATGTGCTTTTGCTGTGATGGATTAAAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896271 chr7:22896271 . . 0 21 hm5C_associated_SNPs_725 0 0 1 1 0 unknown 1 0 1 1 hm5C_site_725 DeepMRMD:1;iRNA_m5C:1 726 chrX 73043746 73043746 1 + G A CESC 73043746 - 73043726 73043766 41 TGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGGAT TGATTACTTTCTGTGGGGCTTGGAACTACATGCCCTAGGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043746 chrX:73043746 . . 0 21 hm5C_associated_SNPs_726 0 0 1 2 0 unknown 1 0 1 1 hm5C_site_726 DeepMRMD:1;iRNA_m5C:1 727 chr5 132203226 132203226 1 + C T CESC 132203226 + 132203206 132203246 41 ACATGGGGGACTGAAGAGTTCGAGAGATCCAAGAGGAAGAA ACATGGGGGACTGAAGAGTTTGAGAGATCCAAGAGGAAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132203226 chr5:132203226 synonymous SNV . 0 21 hm5C_associated_SNPs_727 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_727 DeepMRMD:1;iRNA_m5C:1 728 chr12 52627214 52627214 1 + C G CESC 52627214 + 52627194 52627234 41 CCTCTACGGCCTCGGCGCCTCACGGCCGCGCGTGGCCGTGC CCTCTACGGCCTCGGCGCCTGACGGCCGCGCGTGGCCGTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52627214 chr12:52627214 stopgain 0.110 0 21 hm5C_associated_SNPs_728 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_728 DeepMRMD:1;iRNA_m5C:1 729 chr17 78318498 78318498 1 + C T CESC 78318498 + 78318478 78318518 41 CGTACACGTGTACCCCAGTTCAGTTTTCTTGACATCTTCCC CGTACACGTGTACCCCAGTTTAGTTTTCTTGACATCTTCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78318498 chr17:78318498 synonymous SNV . 0 21 hm5C_associated_SNPs_729 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_729 DeepMRMD:1;iRNA_m5C:1 730 chr5 73981268 73981268 1 + C T CESC 73981268 + 73981248 73981288 41 GCGCTGTGGCCCCTGCCGCTCTTGGTGAAGATGACCCCGAA GCGCTGTGGCCCCTGCCGCTTTTGGTGAAGATGACCCCGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HEXB ENSG00000049860 CDS Human protein_coding chr5:73981268 chr5:73981268 synonymous SNV . 0 21 hm5C_associated_SNPs_730 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_730 DeepMRMD:1;iRNA_m5C:1 731 chr6 7581100 7581100 1 + C A CESC 7581100 + 7581080 7581120 41 GACCAGGATATCACGCGGTTCCAGAACTCTCTGAAAGAGCT GACCAGGATATCACGCGGTTACAGAACTCTCTGAAAGAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581100 chr6:7581100 nonsynonymous SNV 0.799 0 21 hm5C_associated_SNPs_731 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_731 DeepMRMD:1;iRNA_m5C:1 732 chr7 100470816 100470816 1 + C T CESC 100470816 + 100470796 100470836 41 GTGTGGGCTGCTGCTCTCCTCTGAGGGCGAGTGTCAGGGCT GTGTGGGCTGCTGCTCTCCTTTGAGGGCGAGTGTCAGGGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100470816 chr7:100470816 nonsynonymous SNV 0.996 5 21 hm5C_associated_SNPs_732 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_732 DeepMRMD:1;iRNA_m5C:1 733 chr6 36564728 36564728 1 + C T CESC 36564728 + 36564708 36564748 41 CGAGATGCAGCTGATGCAGTCCGAGAGCTAGATGGAAGGTG CGAGATGCAGCTGATGCAGTTCGAGAGCTAGATGGAAGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36564728 chr6:36564728 synonymous SNV . 0 21 hm5C_associated_SNPs_733 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_733 DeepMRMD:1;iRNA_m5C:1 734 chr1 10165581 10165581 1 + C T CESC 10165581 + 10165561 10165601 41 GCCTTTCCAACAGTATTCTCCGATTTTAAGGACTTGATTGG GCCTTTCCAACAGTATTCTCTGATTTTAAGGACTTGATTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBE4B ENSG00000130939 CDS Human protein_coding chr1:10165581 chr1:10165581 synonymous SNV . 0 21 hm5C_associated_SNPs_734 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_734 DeepMRMD:1;iRNA_m5C:1 735 chr10 118314792 118314792 1 + C T CESC 118314792 + 118314772 118314812 41 AATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGTG AATTCACACGGATGGTGCCCTCATAGTCCCCAATTTGGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314792 chr10:118314792 nonsynonymous SNV 0.015 5 21 hm5C_associated_SNPs_735 0 0 0 0 1 unknown 1 0 1 1 hm5C_site_735 DeepMRMD:1;iRNA_m5C:1 736 chr6 7572161 7572161 1 + C G CESC 7572161 + 7572141 7572181 41 CCAACAGAGAAAATGACAAGCAAGAAACATGGATGCTGATG CCAACAGAGAAAATGACAAGGAAGAAACATGGATGCTGATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572161 chr6:7572161 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_736 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_736 DeepMRMD:1;iRNA_m5C:1 737 chr11 67052376 67052376 1 + C T CESC 67052376 + 67052356 67052396 41 ATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCG ATGTCCAAGATGGGCAACCCTTTCCTGACCCAGTGGCAGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052376 chr11:67052376 synonymous SNV . 0 21 hm5C_associated_SNPs_737 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_737 DeepMRMD:1;iRNA_m5C:1 738 chr3 184042681 184042681 1 + C T CESC 184042681 + 184042661 184042701 41 GGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAA GGCAGGCAGAGGAACGAGGATGCCTGAAGGAAGAGCTGGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042681 chr3:184042681 nonsynonymous SNV 0.978 4 21 hm5C_associated_SNPs_738 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_738 DeepMRMD:1;iRNA_m5C:1 739 chr11 65402802 65402802 1 + C T CESC 65402802 + 65402782 65402822 41 GGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCC GGTGACCCAGCATGGCGCAGTGCCATCCTCAGCAACACGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402802 chr11:65402802 synonymous SNV . 0 21 hm5C_associated_SNPs_739 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_739 DeepMRMD:1;iRNA_m5C:1 740 chr1 146742597 146742597 1 + C T CESC 146742597 + 146742577 146742617 41 TTCTTTTTCTTGCCAGGGGCCATCGGGTTTTACTTTTCTCC TTCTTTTTCTTGCCAGGGGCTATCGGGTTTTACTTTTCTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD1L ENSG00000131778 CDS Human protein_coding chr1:146742597 chr1:146742597 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_740 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_740 DeepMRMD:1;iRNA_m5C:1 741 chr12 21598304 21598304 1 + C T CESC 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TCTAAAATATTGGAAGAATTTGATGTTGAAGAACAATCAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598304 synonymous SNV . 0 21 hm5C_associated_SNPs_741 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_741 DeepMRMD:1;iRNA_m5C:1 742 chr3 31658471 31658471 1 + C T CESC 31658471 + 31658451 31658491 41 TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGAGTTC TCTTGCAGTATCTGAGAGACTGATTAACAAAACAAGAGTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31658471 chr3:31658471 stopgain 1.000 1 21 hm5C_associated_SNPs_742 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_742 DeepMRMD:1;iRNA_m5C:1 743 chr19 7528733 7528733 1 + C T CESC 7528733 + 7528713 7528753 41 TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC TCCAGAGCCTGATCTGCAGGTAGCTGGGCAGCGCCAACGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528733 chr19:7528733 stopgain 0.681 0 21 hm5C_associated_SNPs_743 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_743 DeepMRMD:1;iRNA_m5C:1 744 chr7 133682272 133682272 1 + C T CESC 133682272 + 133682252 133682292 41 TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAG TCCTGCTCAAGACAGCCACATGAACACGGATCTCCCCCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682272 chr7:133682272 nonsynonymous SNV 0.031 0 21 hm5C_associated_SNPs_744 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_744 DeepMRMD:1;iRNA_m5C:1 745 chr1 36028876 36028876 1 + C T CESC 36028876 + 36028856 36028896 41 TCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGTAT TCCTGATCAAGGAAGGGGCCTCCTCGCTTCTGTGCAAGTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028876 chr1:36028876 nonsynonymous SNV 0.984 1 21 hm5C_associated_SNPs_745 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_745 DeepMRMD:1;iRNA_m5C:1 746 chr18 60642776 60642776 1 + C T CESC 60642776 + 60642756 60642796 41 TCTCTGTCGAAATGGAAAGCCGCTGCCTCTGTCCAGATCTT TCTCTGTCGAAATGGAAAGCTGCTGCCTCTGTCCAGATCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60642776 chr18:60642776 nonsynonymous SNV 0.377 2 21 hm5C_associated_SNPs_746 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_746 DeepMRMD:1;iRNA_m5C:1 747 chr16 67319380 67319380 1 + C T CESC 67319380 + 67319360 67319400 41 TCCACTGCCACTTCTTCCTGCGTGAGCTGGAGGCTTGCACC TCCACTGCCACTTCTTCCTGTGTGAGCTGGAGGCTTGCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67319380 chr16:67319380 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_747 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_747 DeepMRMD:1;iRNA_m5C:1 748 chr11 61584165 61584165 1 + C T CESC 61584165 + 61584145 61584185 41 GAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGGT GAGCGCTGGGCCACCTCGTCTCAGGTGAAGTAGCGCGGGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584165 chr11:61584165 stopgain 0.984 0 21 hm5C_associated_SNPs_748 0 0 0 0 1 unknown 1 0 1 1 hm5C_site_748 DeepMRMD:1;iRNA_m5C:1 749 chr1 22329579 22329579 1 + C T CESC 22329579 + 22329559 22329599 41 TCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGCAGCT TCCCCTACAGCTGGCCCTGGTAGGTAAGAGCAATAGCAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329579 chr1:22329579 stopgain 1.000 0 21 hm5C_associated_SNPs_749 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_749 DeepMRMD:1;iRNA_m5C:1 750 chr19 50027862 50027862 1 + C T CESC 50027862 + 50027842 50027882 41 ACCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG ACCCTCCGGAGCTGCAACTTTGGTTCCTGCGGAATGGGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCGRT ENSG00000104870 CDS Human protein_coding chr19:50027862 chr19:50027862 nonsynonymous SNV 0.034 3 21 hm5C_associated_SNPs_750 0 0 1 1 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_750 DeepMRMD:1;iRNA_m5C:1 751 chr3 130712932 130712932 1 + C G CESC 130712932 + 130712912 130712952 41 TCCTAGTGGATGATGATTTTCAAACCATAATGTAAGCTTTG TCCTAGTGGATGATGATTTTGAAACCATAATGTAAGCTTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130712932 chr3:130712932 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_751 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_751 DeepMRMD:1;iRNA_m5C:1 752 chr6 160485837 160485837 1 + C T CESC 160485837 + 160485817 160485857 41 TGCCTCTTAACTTTTTTAGCCAGTATTTCTAAAGGAGACTT TGCCTCTTAACTTTTTTAGCTAGTATTTCTAAAGGAGACTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160485837 chr6:160485837 nonsynonymous SNV 0.331 3 21 hm5C_associated_SNPs_752 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_752 DeepMRMD:1;iRNA_m5C:1 753 chr22 18561178 18561178 1 + C T CESC 18561178 + 18561158 18561198 41 TCGACCTCTGCAGCCCCCCTCAGGGGGCTCGGGGGACCCCT TCGACCTCTGCAGCCCCCCTTAGGGGGCTCGGGGGACCCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PEX26 ENSG00000215193 CDS Human protein_coding chr22:18561178 chr22:18561178 synonymous SNV . 0 21 hm5C_associated_SNPs_753 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_753 DeepMRMD:1;iRNA_m5C:1 754 chr19 19466095 19466095 1 + C T CESC 19466095 + 19466075 19466115 41 CTGAATAAAGCCTGTGGGAACGCCATGGATGCCCATGAAGC CTGAATAAAGCCTGTGGGAATGCCATGGATGCCCATGAAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MAU2 ENSG00000129933 CDS Human protein_coding chr19:19466095 chr19:19466095 synonymous SNV . 0 21 hm5C_associated_SNPs_754 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_754 DeepMRMD:1;iRNA_m5C:1 755 chr3 129234393 129234393 1 + C T CESC 129234393 + 129234373 129234413 41 CTGCTCAACAACCTGGGCAACGTCTGCATCAACTGCCGCCA CTGCTCAACAACCTGGGCAATGTCTGCATCAACTGCCGCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFT122 ENSG00000163913 CDS Human protein_coding chr3:129234393 chr3:129234393 synonymous SNV . 0 21 hm5C_associated_SNPs_755 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_755 DeepMRMD:1;iRNA_m5C:1 756 chr17 4859382 4859382 1 + C T CESC 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCGTTGAGAAGAAGGCCTGTAACTGTCTGCTGCTGAAGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859382 synonymous SNV . 0 21 hm5C_associated_SNPs_756 0 0 1 0 2 nucleus 1 0 1 1 hm5C_site_756 DeepMRMD:1;iRNA_m5C:1 757 chr17 48768463 48768463 1 + C G CESC 48768463 + 48768443 48768483 41 TTTTGACTAGGGTCCTGGTCCTGGACAAAGGAGTAGTAGCT TTTTGACTAGGGTCCTGGTCGTGGACAAAGGAGTAGTAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48768463 chr17:48768463 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_757 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_757 DeepMRMD:1;iRNA_m5C:1 758 chr6 47577036 47577036 1 + C G CESC 47577036 + 47577016 47577056 41 TAGAAGCACTGAAAAAGGATCACGGGTAAGTAGCCCTTCTT TAGAAGCACTGAAAAAGGATGACGGGTAAGTAGCCCTTCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47577036 chr6:47577036 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_758 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_758 DeepMRMD:1;iRNA_m5C:1 759 chr7 127228576 127228576 1 + C G CESC 127228576 + 127228556 127228596 41 GGCCTCACCGTGTCCGCGCTCTTTTCGCGGATCTTCGGGAA GGCCTCACCGTGTCCGCGCTGTTTTCGCGGATCTTCGGGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARF5 ENSG00000004059 CDS Human protein_coding chr7:127228576 chr7:127228576 synonymous SNV . 0 21 hm5C_associated_SNPs_759 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_759 DeepMRMD:1;iRNA_m5C:1 760 chrX 41201855 41201855 1 + C G CESC 41201855 + 41201835 41201875 41 CAGTCGCTGGTGTGACAAATCAGATGAAGATGATTGGTCAA CAGTCGCTGGTGTGACAAATGAGATGAAGATGATTGGTCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201855 chrX:41201855 stopgain 1.000 0 21 hm5C_associated_SNPs_760 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_760 DeepMRMD:1;iRNA_m5C:1 761 chr9 139730261 139730261 1 + C T CESC 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCACGCTGGAGGAGCTGTTGGTGCAGCAGGAGACGGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730261 nonsynonymous SNV 0.991 2 21 hm5C_associated_SNPs_761 0 0 1 1 2 chromatin 1 0 1 1 hm5C_site_761 DeepMRMD:1;iRNA_m5C:1 762 chr12 57919806 57919806 1 + C T CESC 57919806 + 57919786 57919826 41 GCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATCAC GCCCCGTGCCCAGGCACCCTTAGCTTCCCACTCCTCATCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919806 chr12:57919806 nonsynonymous SNV 0.979 1 21 hm5C_associated_SNPs_762 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_762 DeepMRMD:1;iRNA_m5C:1 763 chr2 220346365 220346365 1 + C A CESC 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACATACCGCAGAAGAGACCCTAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346365 nonsynonymous SNV 0.690 3 21 hm5C_associated_SNPs_763 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_763 DeepMRMD:1;iRNA_m5C:1 764 chr1 206566160 206566160 1 + C T CESC 206566160 + 206566140 206566180 41 AATCGGTAAAGCAGGAGGACCGGCAGACCCCACGCTCCCCT AATCGGTAAAGCAGGAGGACTGGCAGACCCCACGCTCCCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SRGAP2 ENSG00000163486 CDS Human other chr1:206566160 chr1:206566160 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_764 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_764 DeepMRMD:1;iRNA_m5C:1 765 chr2 219526252 219526252 1 + C G CESC 219526252 + 219526232 219526272 41 ACTGACCGAAAGGTTTTCTTCAACATCCTGGAGGAAGGTGT ACTGACCGAAAGGTTTTCTTGAACATCCTGGAGGAAGGTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCS1L ENSG00000074582 CDS Human protein_coding chr2:219526252 chr2:219526252 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_765 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_765 DeepMRMD:1;iRNA_m5C:1 766 chr1 28862519 28862519 1 + C T CESC 28862519 + 28862499 28862539 41 CACGTGTACGGCTTCGGCCTCTCCAACTACCATCAGCTTGG CACGTGTACGGCTTCGGCCTTTCCAACTACCATCAGCTTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862519 chr1:28862519 synonymous SNV . 0 21 hm5C_associated_SNPs_766 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_766 DeepMRMD:1;iRNA_m5C:1 767 chr17 21319343 21319343 1 + C T CESC 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGTGCGCGTGCAGCTCATCAAGCCGCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319343 nonsynonymous SNV 0.976 4 21 hm5C_associated_SNPs_767 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_767 DeepMRMD:1;iRNA_m5C:1 768 chr17 33328374 33328374 1 + C T CESC 33328374 + 33328354 33328394 41 TTCCCTCGCTGCACCCGAATCCGAGATGATAAGGACTGGAA TTCCCTCGCTGCACCCGAATTCGAGATGATAAGGACTGGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33328374 chr17:33328374 synonymous SNV . 0 21 hm5C_associated_SNPs_768 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_768 DeepMRMD:1;iRNA_m5C:1 769 chr1 978683 978683 1 + C T CESC 978683 + 978663 978703 41 GCGACGTGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATG GCGACGTGTGCTGTGAAGAATGGGCAGGCAGCGTGTGAATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:978683 chr1:978683 synonymous SNV . 0 21 hm5C_associated_SNPs_769 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_769 DeepMRMD:1;iRNA_m5C:1 770 chr22 50960208 50960208 1 + C G CESC 50960208 + 50960188 50960228 41 CCCCCTGTGTGGAGGAGGCTCTGGGACAGAAGCGCAAGAGG CCCCCTGTGTGGAGGAGGCTGTGGGACAGAAGCGCAAGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960208 chr22:50960208 nonsynonymous SNV 0.972 0 21 hm5C_associated_SNPs_770 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_770 DeepMRMD:1;iRNA_m5C:1 771 chr19 3434306 3434306 1 + C T CESC 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGGAACAGGACCCAACTTTTCCCTGGGGGAGCTGCAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434306 synonymous SNV . 0 21 hm5C_associated_SNPs_771 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_771 DeepMRMD:1;iRNA_m5C:1 772 chr1 22333386 22333386 1 + C T CESC 22333386 + 22333366 22333406 41 CCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGC CCCAGCAATGACATCGCCCTTATCAAGCTCTCACGCAGCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333386 chr1:22333386 synonymous SNV . 0 21 hm5C_associated_SNPs_772 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_772 DeepMRMD:1;iRNA_m5C:1 773 chr19 810808 810808 1 + C G CESC 810808 + 810788 810828 41 CACCACCTGCGGGTCTCCTTCTCCAAGTCCACCATCTAGGG CACCACCTGCGGGTCTCCTTGTCCAAGTCCACCATCTAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:810808 chr19:810808 nonsynonymous SNV 0.988 4 21 hm5C_associated_SNPs_773 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_773 DeepMRMD:1;iRNA_m5C:1 774 chr6 37284604 37284604 1 + C T CESC 37284604 + 37284584 37284624 41 TCCGCCTGTGGGACACATATCAGGTAGGAGGGATTCCCCGG TCCGCCTGTGGGACACATATTAGGTAGGAGGGATTCCCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37284604 chr6:37284604 stopgain 0.909 1 21 hm5C_associated_SNPs_774 0 0 1 2 1 chromatin 1 0 1 1 hm5C_site_774 DeepMRMD:1;iRNA_m5C:1 775 chr9 110068756 110068756 1 + C T CESC 110068756 + 110068736 110068776 41 CCACCACCACAACTGTGGCTCAGGCTCCAACCCCTGTCCCT CCACCACCACAACTGTGGCTTAGGCTCCAACCCCTGTCCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110068756 chr9:110068756 stopgain 0.936 0 21 hm5C_associated_SNPs_775 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_775 DeepMRMD:1;iRNA_m5C:1 776 chr16 67283103 67283103 1 + C T CESC 67283103 + 67283083 67283123 41 GTGGCCAGTCTGGCCAAAATCGGTGAGTGCGTGTGTGCGTG GTGGCCAGTCTGGCCAAAATTGGTGAGTGCGTGTGTGCGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67283103 chr16:67283103 synonymous SNV . 0 21 hm5C_associated_SNPs_776 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_776 DeepMRMD:1;iRNA_m5C:1 777 chr19 5144297 5144297 1 + C T CESC 5144297 + 5144277 5144317 41 GTGTCCCTAGGCCAGGTGGTCATCACCAAGAACCGCAACGG GTGTCCCTAGGCCAGGTGGTTATCACCAAGAACCGCAACGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5144297 chr19:5144297 synonymous SNV . 0 21 hm5C_associated_SNPs_777 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_777 DeepMRMD:1;iRNA_m5C:1 778 chr1 24022845 24022845 1 + C T CESC 24022845 + 24022825 24022865 41 CTCTTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAAT CTCTTTCAGTATGATGGGATTATCCTTCCTGGCAAATAAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022845 chr1:24022845 synonymous SNV . 0 21 hm5C_associated_SNPs_778 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_778 DeepMRMD:1;iRNA_m5C:1 779 chr10 17278316 17278316 1 + C T CESC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCCTTTGGTTGATACCCACTCAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278316 synonymous SNV . 0 21 hm5C_associated_SNPs_779 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_779 DeepMRMD:1;iRNA_m5C:1 780 chr10 91532517 91532517 1 + C G CESC 91532517 + 91532497 91532537 41 CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAAACGG CAAGTAAAGAAAATGTGTCTGAACCAAAACGAGCCAAACGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91532517 chr10:91532517 nonsynonymous SNV 0.051 1 21 hm5C_associated_SNPs_780 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_780 DeepMRMD:1;iRNA_m5C:1 781 chr3 138329875 138329875 1 + C G CESC 138329875 + 138329855 138329895 41 TATCTCCGGACTCTGCCACTCTGAGGTTAGTGCCCTGCCCA TATCTCCGGACTCTGCCACTGTGAGGTTAGTGCCCTGCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138329875 chr3:138329875 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_781 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_781 DeepMRMD:1;iRNA_m5C:1 782 chrX 100880767 100880767 1 + C G CESC 100880767 + 100880747 100880787 41 AAACTTCAGGTTCTGAAACTCCTTTTGAATTTGGCTGAAAA AAACTTCAGGTTCTGAAACTGCTTTTGAATTTGGCTGAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880767 chrX:100880767 synonymous SNV . 0 21 hm5C_associated_SNPs_782 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_782 DeepMRMD:1;iRNA_m5C:1 783 chr1 44878382 44878382 1 + C G CESC 44878382 + 44878362 44878402 41 CCTCATCTAGCCCAGAGGATCGGAATGACAGATGTAAGTAC CCTCATCTAGCCCAGAGGATGGGAATGACAGATGTAAGTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878382 chr1:44878382 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_783 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_783 DeepMRMD:1;iRNA_m5C:1 784 chr16 1877400 1877400 1 + C T CESC 1877400 + 1877380 1877420 41 GGCCTACGCGCCCGAGGGCTCGCCCATCCTCATGCCCGCGT GGCCTACGCGCCCGAGGGCTTGCCCATCCTCATGCCCGCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FAHD1 ENSG00000180185 CDS Human protein_coding chr16:1877400 chr16:1877400 nonsynonymous SNV 0.477 0 21 hm5C_associated_SNPs_784 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_784 DeepMRMD:1;iRNA_m5C:1 785 chr2 29147999 29147999 1 + C T CESC 29147999 + 29147979 29148019 41 TTGTATATGGCAGTTGGTTTCAGCCTACTATTGAGCGAGTG TTGTATATGGCAGTTGGTTTTAGCCTACTATTGAGCGAGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR43 ENSG00000163811 CDS Human protein_coding chr2:29147999 chr2:29147999 stopgain 0.999 1 21 hm5C_associated_SNPs_785 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_785 DeepMRMD:1;iRNA_m5C:1 786 chr12 49720471 49720471 1 + C G CESC 49720471 + 49720451 49720491 41 GACTTCAGTGAGCCAGGCCTCAGGATTGCTCCTGGAGACCC GACTTCAGTGAGCCAGGCCTGAGGATTGCTCCTGGAGACCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TROAP ENSG00000135451 CDS Human protein_coding chr12:49720471 chr12:49720471 stopgain 0.993 0 21 hm5C_associated_SNPs_786 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_786 DeepMRMD:1;iRNA_m5C:1 787 chr20 44571747 44571747 1 + C T CESC 44571747 + 44571727 44571767 41 GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCGC GTCCTGCAGGCATTGAGCCTTCACGGGAGTCTTTCAACCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571747 chr20:44571747 nonsynonymous SNV 0.664 4 21 hm5C_associated_SNPs_787 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_787 DeepMRMD:1;iRNA_m5C:1 788 chr7 73609171 73609171 1 + C T CESC 73609171 + 73609151 73609191 41 TTCAGAGATGGCCCTCCCCTCCGTGGATCCAACATGGATTT TTCAGAGATGGCCCTCCCCTTCGTGGATCCAACATGGATTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73609171 chr7:73609171 synonymous SNV . 0 21 hm5C_associated_SNPs_788 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_788 DeepMRMD:1;iRNA_m5C:1 789 chr7 142458521 142458521 1 + C T CESC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTTATCAACGAACAGTGGGTGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458521 synonymous SNV . 0 21 hm5C_associated_SNPs_789 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_789 DeepMRMD:1;iRNA_m5C:1 790 chr20 39744076 39744076 1 + C G CESC 39744076 + 39744056 39744096 41 GATGATCTTTTTGATAGACTCAATGTGAGTAGATGAAGCAC GATGATCTTTTTGATAGACTGAATGTGAGTAGATGAAGCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOP1 ENSG00000198900 CDS Human protein_coding chr20:39744076 chr20:39744076 synonymous SNV . 0 21 hm5C_associated_SNPs_790 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_790 DeepMRMD:1;iRNA_m5C:1 791 chr20 62904609 62904609 1 + C T CESC 62904609 + 62904589 62904629 41 GCAGCCTCCAGGACTTGGCTCGCATCGCCATCCGGGGCACC GCAGCCTCCAGGACTTGGCTTGCATCGCCATCCGGGGCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62904609 chr20:62904609 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_791 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_791 DeepMRMD:1;iRNA_m5C:1 792 chr11 65271929 65271929 1 + C T CESC 65271929 + 65271909 65271949 41 GTATGATTAAAAGTTGTGTTCCCCAATGCTTGGAGTAGTGA GTATGATTAAAAGTTGTGTTTCCCAATGCTTGGAGTAGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271929 chr11:65271929 . . 0 21 hm5C_associated_SNPs_792 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_792 DeepMRMD:1;iRNA_m5C:1 793 chr16 22237252 22237252 1 + C T CHOL 22237252 + 22237232 22237272 41 GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTCC GCAACCTAACAAAAAGTGAGTGGTATAGCTCCAGCGGGTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22237252 chr16:22237252 nonsynonymous SNV 0.011 1 21 hm5C_associated_SNPs_793 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_793 DeepMRMD:1;iRNA_m5C:1 794 chr7 142459799 142459799 1 + C T COAD 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACGCCCGCGTGTCCACTATCTCTCTGCCCACCGCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459799 synonymous SNV . 0 21 hm5C_associated_SNPs_794 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_794 DeepMRMD:1;iRNA_m5C:1 795 chr14 102466397 102466397 1 + C T COAD 102466397 + 102466377 102466417 41 AAGTTTGGTAGGCTGAAGGACGACAGAGAGAAGTGTGCAAA AAGTTTGGTAGGCTGAAGGATGACAGAGAGAAGTGTGCAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466397 chr14:102466397 synonymous SNV . 0 21 hm5C_associated_SNPs_795 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_795 DeepMRMD:1;iRNA_m5C:1 796 chr1 206902135 206902135 1 + C T COAD 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATTGTGGATGTGTACGAGAATCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902135 synonymous SNV . 0 21 hm5C_associated_SNPs_796 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_796 DeepMRMD:1;iRNA_m5C:1 797 chr11 65402839 65402839 1 + C T COAD 65402839 + 65402819 65402859 41 CGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCC CGCCCTCCCTGCTGGCGCTGTGCCATGTCCTGGATGATGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402839 chr11:65402839 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_797 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_797 DeepMRMD:1;iRNA_m5C:1 798 chr3 185337187 185337187 1 + C A COAD 185337187 + 185337167 185337207 41 CTTCTATCCTAAATTAAAGTCTGGGGGTTACCAAGCAGTGA CTTCTATCCTAAATTAAAGTATGGGGGTTACCAAGCAGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SENP2 ENSG00000163904 CDS Human protein_coding chr3:185337187 chr3:185337187 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_798 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_798 DeepMRMD:1;iRNA_m5C:1 799 chr12 101680176 101680176 1 + C T COAD 101680176 + 101680156 101680196 41 GTTTTTTTTGACTATCACCTCGATCCTGGAGACTCAGGACA GTTTTTTTTGACTATCACCTTGATCCTGGAGACTCAGGACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101680176 chr12:101680176 nonsynonymous SNV 0.985 2 21 hm5C_associated_SNPs_799 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_799 DeepMRMD:1;iRNA_m5C:1 800 chr2 233128132 233128132 1 + C T COAD 233128132 + 233128112 233128152 41 CAGCAGCGCTTTGTGGACGGCGCACTTCGTTTGGATCAGGT CAGCAGCGCTTTGTGGACGGTGCACTTCGTTTGGATCAGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DIS3L2 ENSG00000144535 CDS Human protein_coding chr2:233128132 chr2:233128132 synonymous SNV . 0 21 hm5C_associated_SNPs_800 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_800 DeepMRMD:1;iRNA_m5C:1 801 chr11 10774310 10774310 1 + C A COAD 10774310 + 10774290 10774330 41 ACAACTGCACATATGGATTGCTTTGGCGGTCAGTATTCATG ACAACTGCACATATGGATTGATTTGGCGGTCAGTATTCATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774310 chr11:10774310 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_801 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_801 DeepMRMD:1;iRNA_m5C:1 802 chr10 103901206 103901206 1 + C T COAD 103901206 + 103901186 103901226 41 GTTCCACATGTACCTATGGGCCCTTGGGATGGGGCCCAGGG GTTCCACATGTACCTATGGGTCCTTGGGATGGGGCCCAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901206 chr10:103901206 nonsynonymous SNV 0.967 0 21 hm5C_associated_SNPs_802 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_802 DeepMRMD:1;iRNA_m5C:1 803 chrX 153663636 153663636 1 + C T COAD 153663636 + 153663616 153663656 41 CCAGGTTCATTCTGGCCAACCGCCTCTACCCAGTGTCTGCC CCAGGTTCATTCTGGCCAACTGCCTCTACCCAGTGTCTGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153663636 chrX:153663636 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_803 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_803 DeepMRMD:1;iRNA_m5C:1 804 chr22 26291140 26291140 1 + C T COAD 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGTGCTTCGACTGTGCTCAGATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291140 nonsynonymous SNV 0.893 4 21 hm5C_associated_SNPs_804 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_804 DeepMRMD:1;iRNA_m5C:1 805 chr9 117053104 117053104 1 + C T COAD 117053104 + 117053084 117053124 41 TAACAGGGGGAGCAGGGAGACGATGGGGACCCTGGCCCCAT TAACAGGGGGAGCAGGGAGATGATGGGGACCCTGGCCCCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117053104 chr9:117053104 synonymous SNV . 0 21 hm5C_associated_SNPs_805 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_805 DeepMRMD:1;iRNA_m5C:1 806 chr1 22332162 22332162 1 + C A COAD 22332162 + 22332142 22332182 41 CCTCTGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTG CCTCTGCCTGCAGGAGGGATATGACCTACCAGGTGGTGTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332162 chr1:22332162 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_806 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_806 DeepMRMD:1;iRNA_m5C:1 807 chr5 140182596 140182596 1 + C T COAD 140182596 + 140182576 140182616 41 TGCAGACTCAGGCTACAACGCGTGGCTTTCGTATGAGCTGC TGCAGACTCAGGCTACAACGTGTGGCTTTCGTATGAGCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PCDHA3 ENSG00000255408 CDS Human protein_coding chr5:140182596 chr5:140182596 nonsynonymous SNV 0.607 3 21 hm5C_associated_SNPs_807 0 0 0 0 0 insoluble cytoplasm 1 0 1 1 hm5C_site_807 DeepMRMD:1;iRNA_m5C:1 808 chr2 63834096 63834096 1 + C A COAD 63834096 + 63834076 63834116 41 GACAGAAGAAAAAGAAAGTGCTTTTGAATTTCTTTCCTCTG GACAGAAGAAAAAGAAAGTGATTTTGAATTTCTTTCCTCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MDH1 ENSG00000014641 CDS Human protein_coding chr2:63834096 chr2:63834096 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_808 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_808 DeepMRMD:1;iRNA_m5C:1 809 chr6 106555109 106555109 1 + C T COAD 106555109 + 106555089 106555129 41 AGTGACAATGCTGACCGGCTCGAGGACGTGGAGGATGACAT AGTGACAATGCTGACCGGCTTGAGGACGTGGAGGATGACAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106555109 chr6:106555109 synonymous SNV . 0 21 hm5C_associated_SNPs_809 0 0 0 0 0 cytosol 1 0 1 1 hm5C_site_809 DeepMRMD:1;iRNA_m5C:1 810 chr17 48696108 48696108 1 + C T COAD 48696108 + 48696088 48696128 41 TTCGTGCTGACGGCCCAGTTCGTGCTAGTCAACGTGGTGAT TTCGTGCTGACGGCCCAGTTTGTGCTAGTCAACGTGGTGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48696108 chr17:48696108 synonymous SNV . 0 21 hm5C_associated_SNPs_810 0 0 1 0 1 exosome 1 0 1 1 hm5C_site_810 DeepMRMD:1;iRNA_m5C:1 811 chr19 30498487 30498487 1 + C A COAD 30498487 + 30498467 30498507 41 ATTTGCTAGCTGATAAAGAACTGTGGGCTCGACTTGAAGAA ATTTGCTAGCTGATAAAGAAATGTGGGCTCGACTTGAAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30498487 chr19:30498487 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_811 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_811 DeepMRMD:1;iRNA_m5C:1 812 chr16 1551467 1551467 1 + C T COAD 1551467 + 1551447 1551487 41 GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCG GCTGCTGGCCTTGGCCTCCCTCCAGCCTGCGGGTGACGGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551467 chr16:1551467 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_812 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_812 DeepMRMD:1;iRNA_m5C:1 813 chr22 29439389 29439389 1 + C T COAD 29439389 + 29439369 29439409 41 TCAACAAGCAGAAAGTGGCTCGAGCAAGGATCCAGCACCGC TCAACAAGCAGAAAGTGGCTTGAGCAAGGATCCAGCACCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29439389 chr22:29439389 stopgain 0.996 1 21 hm5C_associated_SNPs_813 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_813 DeepMRMD:1;iRNA_m5C:1 814 chr7 128407566 128407566 1 + C T COAD 128407566 + 128407546 128407586 41 CAGAATGGGTAAAGACAGAGCGAGAGCAGTTTGTTGAGTTT CAGAATGGGTAAAGACAGAGTGAGAGCAGTTTGTTGAGTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALU ENSG00000128595 CDS Human protein_coding chr7:128407566 chr7:128407566 stopgain 0.998 1 21 hm5C_associated_SNPs_814 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_814 DeepMRMD:1;iRNA_m5C:1 815 chr10 75871762 75871762 1 + C T COAD 75871762 + 75871742 75871782 41 GTCCCCCCTGACATGGAAGACGATTACGAACCTGAGCTGCT GTCCCCCCTGACATGGAAGATGATTACGAACCTGAGCTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871762 chr10:75871762 synonymous SNV . 0 21 hm5C_associated_SNPs_815 2 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_815 DeepMRMD:1;iRNA_m5C:1 not specified not specified 816 chr7 130021519 130021519 1 + C T COAD 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTCCCCCATCGACGTCTGAGTGCCCTTCCCCAGCATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021519 stopgain 0.899 1 21 hm5C_associated_SNPs_816 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_816 DeepMRMD:1;iRNA_m5C:1 817 chr2 209218844 209218844 1 + C T COAD 209218844 + 209218824 209218864 41 ATTATTCTTTGCTGGTTGGGCGAGATGATACTAGCAATGAG ATTATTCTTTGCTGGTTGGGTGAGATGATACTAGCAATGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209218844 chr2:209218844 stopgain 1.000 1 21 hm5C_associated_SNPs_817 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_817 DeepMRMD:1;iRNA_m5C:1 818 chr7 27833973 27833973 1 + C T COAD 27833973 + 27833953 27833993 41 TAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA TAATGTCTTCACAAAGAAAATGGGGAATCAGCAGAAAGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833973 chr7:27833973 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_818 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_818 DeepMRMD:1;iRNA_m5C:1 819 chr16 1550684 1550684 1 + C T COAD 1550684 + 1550664 1550704 41 CCGGATCCACCCCGAGGGGCCTCCCCTGAAATTCCAGGTGA CCGGATCCACCCCGAGGGGCTTCCCCTGAAATTCCAGGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550684 chr16:1550684 nonsynonymous SNV 0.773 3 21 hm5C_associated_SNPs_819 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_819 DeepMRMD:1;iRNA_m5C:1 820 chr11 65396110 65396110 1 + C T COAD 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTCGTGCTGACCTACATTGCGCCCTGGCAGATCACCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396110 synonymous SNV . 0 21 hm5C_associated_SNPs_820 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_820 DeepMRMD:1;iRNA_m5C:1 821 chr3 38180279 38180279 1 + C T COAD 38180279 + 38180259 38180299 41 CTGCTCTCAACATGCGAGTGCGGCGCCGCCTGTCTCTGTTC CTGCTCTCAACATGCGAGTGTGGCGCCGCCTGTCTCTGTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYD88 ENSG00000172936 CDS Human protein_coding chr3:38180279 chr3:38180279 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_821 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_821 DeepMRMD:1;iRNA_m5C:1 822 chr3 184042675 184042675 1 + C T COAD 184042675 + 184042655 184042695 41 GTGAATGGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAG GTGAATGGCAGGCAGAGGAATGAGGACGCCTGAAGGAAGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042675 chr3:184042675 stopgain 0.991 0 21 hm5C_associated_SNPs_822 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_822 DeepMRMD:1;iRNA_m5C:1 823 chr13 100188911 100188911 1 + C G COAD 100188911 + 100188891 100188931 41 GTTACGATGTTGAAGATGGTCAGAGGTTCTGTAATCCTGGA GTTACGATGTTGAAGATGGTGAGAGGTTCTGTAATCCTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM9SF2 ENSG00000125304 CDS Human protein_coding chr13:100188911 chr13:100188911 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_823 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_823 DeepMRMD:1;iRNA_m5C:1 824 chr11 67815433 67815433 1 + C T COAD 67815433 + 67815413 67815453 41 GGACCCTACCCCTTTGGCATCGATCCTGTGAGTCCTGGGAT GGACCCTACCCCTTTGGCATTGATCCTGTGAGTCCTGGGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815433 chr11:67815433 synonymous SNV . 0 21 hm5C_associated_SNPs_824 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_824 DeepMRMD:1;iRNA_m5C:1 825 chr1 22835072 22835072 1 + C A COAD 22835072 + 22835052 22835092 41 TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAG TGGTTCAGGTGGTTTCAATTATCTGATATCAGCAGTTCTAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22835072 chr1:22835072 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_825 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_825 DeepMRMD:1;iRNA_m5C:1 826 chr12 101711340 101711340 1 + C T COAD 101711340 + 101711320 101711360 41 GGGATGGTGGCAGAGGAAATCGAAGAGGAACCTGCCGCAGG GGGATGGTGGCAGAGGAAATTGAAGAGGAACCTGCCGCAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711340 chr12:101711340 synonymous SNV . 0 21 hm5C_associated_SNPs_826 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_826 DeepMRMD:1;iRNA_m5C:1 827 chr5 133909449 133909449 1 + C T COAD 133909449 + 133909429 133909469 41 TTATTGAACAGGATCTGTGTCGAGGTAGGCGCCTTCCCCAC TTATTGAACAGGATCTGTGTTGAGGTAGGCGCCTTCCCCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JADE2 ENSG00000043143 CDS Human protein_coding chr5:133909449 chr5:133909449 stopgain 0.997 0 21 hm5C_associated_SNPs_827 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_827 DeepMRMD:1;iRNA_m5C:1 828 chr9 131455942 131455942 1 + C T COAD 131455942 + 131455922 131455962 41 GACGAAACGTTCGAGTCAAACGCAGAATAAAGCCAGCAGGA GACGAAACGTTCGAGTCAAATGCAGAATAAAGCCAGCAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455942 chr9:131455942 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_828 0 0 1 1 1 Ribosome 1 0 1 1 hm5C_site_828 DeepMRMD:1;iRNA_m5C:1 829 chr5 72187658 72187658 1 + C T COAD 72187658 + 72187638 72187678 41 AATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGG AATATATTCAGATGCTAATGTCTCCACTGATCCAGAAATGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187658 chr5:72187658 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_829 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_829 DeepMRMD:1;iRNA_m5C:1 830 chr20 37159852 37159852 1 + C A COAD 37159852 + 37159832 37159872 41 AGATTCAGCACTTTTGGAAGCCATTGGTTGCCAGATGGAGA AGATTCAGCACTTTTGGAAGACATTGGTTGCCAGATGGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37159852 chr20:37159852 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_830 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_830 DeepMRMD:1;iRNA_m5C:1 831 chr1 145663167 145663167 1 + C T COAD 145663167 + 145663147 145663187 41 GGTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTT GGTCTTTACTAGCTTTGGGGTCATTTGGATCACACGATGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663167 chr1:145663167 synonymous SNV . 0 21 hm5C_associated_SNPs_831 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_831 DeepMRMD:1;iRNA_m5C:1 832 chr14 73576075 73576075 1 + C T COAD 73576075 + 73576055 73576095 41 GTGCTCTTCAGAAAAGGTTGCGTGATAGAGAAAAGGAAATG GTGCTCTTCAGAAAAGGTTGTGTGATAGAGAAAAGGAAATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576075 chr14:73576075 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_832 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_832 DeepMRMD:1;iRNA_m5C:1 833 chr14 75746599 75746599 1 + C T COAD 75746599 + 75746579 75746619 41 GGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCA GGACTTCTGCACGGACCTGGTCGTCTCCAGTGCCAACTTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746599 chr14:75746599 nonsynonymous SNV 0.981 0 21 hm5C_associated_SNPs_833 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_833 DeepMRMD:1;iRNA_m5C:1 834 chr16 29998787 29998787 1 + C T COAD 29998787 + 29998767 29998807 41 ACCTCTGGTGGCTATGGCAGCGGGGGGCAGATGGGTGCGGC ACCTCTGGTGGCTATGGCAGTGGGGGGCAGATGGGTGCGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29998787 chr16:29998787 nonsynonymous SNV 0.996 2 21 hm5C_associated_SNPs_834 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_834 DeepMRMD:1;iRNA_m5C:1 835 chr15 74240213 74240213 1 + C T COAD 74240213 + 74240193 74240233 41 TGCCAGTGGATCGACATAACCGACGTGCAGCCTGGGAACTA TGCCAGTGGATCGACATAACTGACGTGCAGCCTGGGAACTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74240213 chr15:74240213 synonymous SNV . 0 21 hm5C_associated_SNPs_835 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_835 DeepMRMD:1;iRNA_m5C:1 836 chr11 9462007 9462007 1 + C T COAD 9462007 + 9461987 9462027 41 ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATGAT ATTATGACTTGGCAGAGGAATTGGGGAGTGATGAAGATGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462007 chr11:9462007 synonymous SNV . 0 21 hm5C_associated_SNPs_836 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_836 DeepMRMD:1;iRNA_m5C:1 837 chr20 43545459 43545459 1 + C T COAD 43545459 + 43545439 43545479 41 CATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC CATTTTGAGACCCATGAGGCTGCACAGCAGGCCATCAACAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545459 chr20:43545459 synonymous SNV . 0 21 hm5C_associated_SNPs_837 0 0 1 1 1 chromatin 1 0 1 1 hm5C_site_837 DeepMRMD:1;iRNA_m5C:1 838 chr13 24823790 24823790 1 + C T COAD 24823790 + 24823770 24823810 41 TCCTGAAGACTCGGTTGCTGCAGACCCCCAGAAGGAAGACC TCCTGAAGACTCGGTTGCTGTAGACCCCCAGAAGGAAGACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SPATA13 ENSG00000182957 CDS Human protein_coding chr13:24823790 chr13:24823790 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_838 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_838 DeepMRMD:1;iRNA_m5C:1 839 chr12 52380706 52380706 1 + C T COAD 52380706 + 52380686 52380726 41 GCTTGTATATTGGGAGATTGCTCGAAGATGCAATTCTGGAG GCTTGTATATTGGGAGATTGTTCGAAGATGCAATTCTGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52380706 chr12:52380706 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_839 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_839 DeepMRMD:1;iRNA_m5C:1 840 chr1 156255378 156255378 1 + C T COAD 156255378 + 156255358 156255398 41 CCGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT CCGAAGACGATGCCAACCTGTTGCCTGAGAAAGCGGCCCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255378 chr1:156255378 synonymous SNV . 0 21 hm5C_associated_SNPs_840 0 0 0 0 1 cytosol 1 0 1 1 hm5C_site_840 DeepMRMD:1;iRNA_m5C:1 841 chr3 15287176 15287176 1 + C T COAD 15287176 + 15287156 15287196 41 ACACAATCCATTACACGGTTCGGGTAAGTAAAACCAACACA ACACAATCCATTACACGGTTTGGGTAAGTAAAACCAACACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15287176 chr3:15287176 nonsynonymous SNV 0.926 4 21 hm5C_associated_SNPs_841 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_841 DeepMRMD:1;iRNA_m5C:1 842 chr6 36169261 36169261 1 + C T COAD 36169261 + 36169241 36169281 41 CCTACTGTGAGGCCCACTCGCCACCAGGTGCGGCCACTGCT CCTACTGTGAGGCCCACTCGTCACCAGGTGCGGCCACTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36169261 chr6:36169261 nonsynonymous SNV 0.101 4 21 hm5C_associated_SNPs_842 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_842 DeepMRMD:1;iRNA_m5C:1 843 chr11 73073732 73073732 1 + C T COAD 73073732 + 73073712 73073752 41 TTCGCCCAGCCCCTCGGGGACGCTGCAGAGCCAGGCCAGCC TTCGCCCAGCCCCTCGGGGATGCTGCAGAGCCAGGCCAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73073732 chr11:73073732 nonsynonymous SNV 0.941 4 21 hm5C_associated_SNPs_843 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_843 DeepMRMD:1;iRNA_m5C:1 844 chr11 125513698 125513698 1 + C T COAD 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513698 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_844 0 0 1 2 2 Ribosome 1 0 1 1 hm5C_site_844 DeepMRMD:1;iRNA_m5C:1 845 chr12 69044226 69044226 1 + C T COAD 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCCTATGATAGAAGATTCTTATAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044226 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_845 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_845 DeepMRMD:1;iRNA_m5C:1 846 chr1 109811555 109811555 1 + C T COAD 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGTGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811555 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_846 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_846 DeepMRMD:1;iRNA_m5C:1 847 chr19 42392911 42392911 1 + C T COAD 42392911 + 42392891 42392931 41 GGCCCTCCTGCAGCACGTGGCCCTGCAGTTTGAGCCAGGAC GGCCCTCCTGCAGCACGTGGTCCTGCAGTTTGAGCCAGGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392911 chr19:42392911 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_847 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_847 DeepMRMD:1;iRNA_m5C:1 848 chr6 146875716 146875716 1 + C T COAD 146875716 + 146875696 146875736 41 AGATCAAGAGACCTTGAGAGCAGAGAACAAATCCCAGTGTT AGATCAAGAGACCTTGAGAGTAGAGAACAAATCCCAGTGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAB32 ENSG00000118508 CDS Human protein_coding chr6:146875716 chr6:146875716 nonsynonymous SNV 0.472 1 21 hm5C_associated_SNPs_848 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_848 DeepMRMD:1;iRNA_m5C:1 849 chr10 118314737 118314737 1 + C T COAD 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGGCACACCTGAATTAGTCTGATTGGACCCCAGCGATGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314737 stopgain 0.993 1 21 hm5C_associated_SNPs_849 0 0 0 0 1 unknown 1 0 1 1 hm5C_site_849 DeepMRMD:1;iRNA_m5C:1 850 chr12 109547637 109547637 1 + C T COAD 109547637 + 109547617 109547657 41 TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTACAGACG TTCTTGATCTTTTTCAGAAGTGGCACCATGTACTACAGACG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547637 chr12:109547637 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_850 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_850 DeepMRMD:1;iRNA_m5C:1 851 chr4 77661609 77661609 1 + C T COAD 77661609 + 77661589 77661629 41 AGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGC AGTCTGGGCCGGAGGGGGCCTGGCCCAGGCAGCGCCTCGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661609 chr4:77661609 synonymous SNV . 0 21 hm5C_associated_SNPs_851 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_851 DeepMRMD:1;iRNA_m5C:1 852 chr1 22307561 22307561 1 + C T COAD 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGGTGTTGGGTGAGTACGACCGTGCTGTGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307561 synonymous SNV . 0 21 hm5C_associated_SNPs_852 0 0 0 0 1 unknown 1 0 1 1 hm5C_site_852 DeepMRMD:1;iRNA_m5C:1 853 chr7 77214878 77214878 1 + C T COAD 77214878 + 77214858 77214898 41 AGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAGG AGATCATTGTAATGGCCTGCTGAGAATTTGAGATGGGAAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214878 chr7:77214878 stopgain 1.000 1 21 hm5C_associated_SNPs_853 0 0 1 1 1 Ribosome 1 0 1 1 hm5C_site_853 DeepMRMD:1;iRNA_m5C:1 854 chr5 179146762 179146762 1 + C T COAD 179146762 + 179146742 179146782 41 GAGTACGTACCTGATCCAGACGCAGAGAAACCTGAGGATTG GAGTACGTACCTGATCCAGATGCAGAGAAACCTGAGGATTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146762 chr5:179146762 synonymous SNV . 0 21 hm5C_associated_SNPs_854 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_854 DeepMRMD:1;iRNA_m5C:1 855 chr15 34517761 34517761 1 + C T COAD 34517761 + 34517741 34517781 41 CGAAGTGACCGGGGCAGTGGCCAGGGAGACTCGCTCTACCC CGAAGTGACCGGGGCAGTGGTCAGGGAGACTCGCTCTACCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517761 chr15:34517761 synonymous SNV . 0 21 hm5C_associated_SNPs_855 0 0 1 1 2 Ribosome 1 0 1 1 hm5C_site_855 DeepMRMD:1;iRNA_m5C:1 856 chr20 35866808 35866808 1 + C T COAD 35866808 + 35866788 35866828 41 CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAGAGCAGTAG CCTCTTTCCTTTGGCAGGATTGCTGCAGAGCAGAGCAGTAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35866808 chr20:35866808 synonymous SNV . 0 21 hm5C_associated_SNPs_856 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_856 DeepMRMD:1;iRNA_m5C:1 857 chr21 45736382 45736382 1 + C T COAD 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGATGCCCTCTGCCTTCGACCGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736382 nonsynonymous SNV 0.394 4 21 hm5C_associated_SNPs_857 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_857 DeepMRMD:1;iRNA_m5C:1 858 chr12 6965312 6965312 1 + C T COAD 6965312 + 6965292 6965332 41 TGCCTGACATTGTCAGAGATCGGGTATGACTGCCCCCTATG TGCCTGACATTGTCAGAGATTGGGTATGACTGCCCCCTATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6965312 chr12:6965312 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_858 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_858 DeepMRMD:1;iRNA_m5C:1 859 chr9 131247109 131247109 1 + C T COAD 131247109 + 131247089 131247129 41 CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAG CCATCCGAGCCCAGAAGGAGTGAGCCGAGAAGAGCGAGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247109 chr9:131247109 stopgain 1.000 1 21 hm5C_associated_SNPs_859 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_859 DeepMRMD:1;iRNA_m5C:1 860 chr14 23794460 23794460 1 + C T COAD 23794460 + 23794440 23794480 41 TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATGG TCCTTCTTTCTTCCAGGGGCTGGGCTAGAGCGACATCATGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794460 chr14:23794460 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_860 0 0 1 0 1 unknown 1 0 1 1 hm5C_site_860 DeepMRMD:1;iRNA_m5C:1 861 chr21 47831434 47831434 1 + C A COAD 47831434 + 47831414 47831454 41 GGAGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGC GGAGCGCAGGCACAGCCAGGACCTGGAGGCCCTGCAGCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831434 chr21:47831434 nonsynonymous SNV 0.966 2 21 hm5C_associated_SNPs_861 0 0 0 0 0 Exosome 1 0 1 1 hm5C_site_861 DeepMRMD:1;iRNA_m5C:1 862 chr9 95599749 95599749 1 + C T COAD 95599749 + 95599729 95599769 41 GCTGGGGCCGCTGGAGGCCCCGGGGCCTGAGTTTCCGGCCA GCTGGGGCCGCTGGAGGCCCTGGGGCCTGAGTTTCCGGCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599749 chr9:95599749 . . 0 21 hm5C_associated_SNPs_862 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_862 DeepMRMD:1;iRNA_m5C:1 863 chr10 45477989 45477989 1 + C T COAD 45477989 + 45477969 45478009 41 GAAGAAGGGACTCTGATCATCGAGGGGCTCCTCAACATTGC GAAGAAGGGACTCTGATCATTGAGGGGCTCCTCAACATTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45477989 chr10:45477989 synonymous SNV . 0 21 hm5C_associated_SNPs_863 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_863 DeepMRMD:1;iRNA_m5C:1 864 chr2 32673990 32673990 1 + C A COAD 32673990 + 32673970 32674010 41 AAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTT AAATTGATTTATCAGATGTCATTTCAGGTAGTGATTTCTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673990 chr2:32673990 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_864 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_864 DeepMRMD:1;iRNA_m5C:1 865 chr9 104314845 104314845 1 + C T COAD 104314845 + 104314825 104314865 41 GGGATGAAGAAGAACGAGAACGAGAAAGGAGGGAGAAGGAG GGGATGAAGAAGAACGAGAATGAGAAAGGAGGGAGAAGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RNF20 ENSG00000155827 CDS Human protein_coding chr9:104314845 chr9:104314845 stopgain 0.997 0 21 hm5C_associated_SNPs_865 0 0 1 0 0 nucleus 1 0 1 1 hm5C_site_865 DeepMRMD:1;iRNA_m5C:1 866 chr19 4423372 4423372 1 + C T COAD 4423372 + 4423352 4423392 41 GGAAAAAGGAAGAAGAGAAACGGTTAAGAGAAGAAGAGAAG GGAAAAAGGAAGAAGAGAAATGGTTAAGAGAAGAAGAGAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4423372 chr19:4423372 nonsynonymous SNV 0.942 3 21 hm5C_associated_SNPs_866 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_866 DeepMRMD:1;iRNA_m5C:1 867 chr2 28002338 28002338 1 + C T COAD 28002338 + 28002318 28002358 41 TCGTGGAAAAGAAAAAAATACGCTCCCTTTAAACGGTGGAT TCGTGGAAAAGAAAAAAATATGCTCCCTTTAAACGGTGGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPL33 ENSG00000243147 CDS Human protein_coding chr2:28002338 chr2:28002338 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_867 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_867 DeepMRMD:1;iRNA_m5C:1 868 chr6 30692147 30692147 1 + C T COAD 30692147 + 30692127 30692167 41 GCAGAAGAGGAGGAGGATTTCGGTGAGGAGGCCGAAGAGGA GCAGAAGAGGAGGAGGATTTTGGTGAGGAGGCCGAAGAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TUBB ENSG00000196230 CDS Human protein_coding chr6:30692147 chr6:30692147 synonymous SNV . 0 21 hm5C_associated_SNPs_868 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_868 DeepMRMD:1;iRNA_m5C:1 869 chr20 30381750 30381750 1 + C A COAD 30381750 + 30381730 30381770 41 CAAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGA CAAGAACTGTGGAAATATGCACTTTCTCGTTTGATTCTCGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381750 chr20:30381750 nonsynonymous SNV 0.878 3 21 hm5C_associated_SNPs_869 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_869 DeepMRMD:1;iRNA_m5C:1 870 chr11 68204451 68204451 1 + C T COAD 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACGGCTCTGACGAGCTCATGTGTGGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204451 synonymous SNV . 0 21 hm5C_associated_SNPs_870 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_870 DeepMRMD:1;iRNA_m5C:1 871 chr19 42729206 42729206 1 + C T COAD 42729206 + 42729186 42729226 41 GAGTTCTTGGAGCATCAGGGCACCCACTTTGACTCCCTAGA GAGTTCTTGGAGCATCAGGGTACCCACTTTGACTCCCTAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF526 ENSG00000167625 CDS Human protein_coding chr19:42729206 chr19:42729206 synonymous SNV . 0 21 hm5C_associated_SNPs_871 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_871 DeepMRMD:1;iRNA_m5C:1 872 chr21 38853089 38853089 1 + C T COAD 38853089 + 38853069 38853109 41 GAAAAGTGGATGGATCGTTACGAAATTGACTCCTTGATAGG GAAAAGTGGATGGATCGTTATGAAATTGACTCCTTGATAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38853089 chr21:38853089 synonymous SNV . 0 21 hm5C_associated_SNPs_872 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_872 DeepMRMD:1;iRNA_m5C:1 873 chr2 176987600 176987600 1 + C T COAD 176987600 + 176987580 176987620 41 TGAGGGCGACGAGGTGTTCGCGGCGCGCTTCGGGCCGCCGG TGAGGGCGACGAGGTGTTCGTGGCGCGCTTCGGGCCGCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176987600 chr2:176987600 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_873 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_873 DeepMRMD:1;iRNA_m5C:1 874 chr10 103920362 103920362 1 + C T COAD 103920362 + 103920342 103920382 41 CGGTGGCCAGAAGCTTCTGACGAGAAAGGCTGACAGCAGCT CGGTGGCCAGAAGCTTCTGATGAGAAAGGCTGACAGCAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103920362 chr10:103920362 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_874 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_874 DeepMRMD:1;iRNA_m5C:1 875 chr2 175268839 175268839 1 + C T COAD 175268839 + 175268819 175268859 41 CTTTGAAAATAGAGGGAGTTCGTAATATTTCTAATCAACTT CTTTGAAAATAGAGGGAGTTTGTAATATTTCTAATCAACTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175268839 chr2:175268839 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_875 0 0 1 0 1 exosome 1 0 1 1 hm5C_site_875 DeepMRMD:1;iRNA_m5C:1 876 chr9 139749738 139749738 1 + C T COAD 139749738 + 139749718 139749758 41 GGGCAGACAGGCCCGGGGGGCGTCGTGGGTCTGGACGACCT GGGCAGACAGGCCCGGGGGGTGTCGTGGGTCTGGACGACCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139749738 chr9:139749738 synonymous SNV . 0 21 hm5C_associated_SNPs_876 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_876 DeepMRMD:1;iRNA_m5C:1 877 chr2 70122252 70122252 1 + C T COAD 70122252 + 70122232 70122272 41 GGCGTTCCCGGTCCACATCCCGGGAGAGAGAACGCAGGCGC GGCGTTCCCGGTCCACATCCTGGGAGAGAGAACGCAGGCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122252 chr2:70122252 nonsynonymous SNV 0.950 3 21 hm5C_associated_SNPs_877 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_877 DeepMRMD:1;iRNA_m5C:1 878 chr7 142459652 142459652 1 + C T COAD 142459652 + 142459632 142459672 41 CAGGTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGG CAGGTGAGACTGGGAGAGCATAACATCGAAGTCCTGGAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459652 chr7:142459652 synonymous SNV . 0 21 hm5C_associated_SNPs_878 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_878 DeepMRMD:1;iRNA_m5C:1 879 chr19 7620161 7620161 1 + C T COAD 7620161 + 7620141 7620181 41 CTCTACGAGAAGGTTTTCTCCAGGCGCGCGGACCGGCACAG CTCTACGAGAAGGTTTTCTCTAGGCGCGCGGACCGGCACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620161 chr19:7620161 synonymous SNV . 0 21 hm5C_associated_SNPs_879 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_879 DeepMRMD:1;iRNA_m5C:1 880 chr10 93695421 93695421 1 + C T COAD 93695421 + 93695401 93695441 41 TTTGTTATTTCAGGCTAGATCGCCTTTTTATTTTACTGGAT TTTGTTATTTCAGGCTAGATTGCCTTTTTATTTTACTGGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93695421 chr10:93695421 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_880 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_880 DeepMRMD:1;iRNA_m5C:1 881 chr5 122144038 122144038 1 + C T COAD 122144038 + 122144018 122144058 41 GTTTGTAGAAAAACGGAGAGCAGCTCTTGAAAGGTAATTCT GTTTGTAGAAAAACGGAGAGTAGCTCTTGAAAGGTAATTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122144038 chr5:122144038 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_881 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_881 DeepMRMD:1;iRNA_m5C:1 882 chr11 65632544 65632544 1 + C T COAD 65632544 + 65632524 65632564 41 GGGAACCCTGAATCAGGGGCCATGACCTCTCCAAACCCTCT GGGAACCCTGAATCAGGGGCTATGACCTCTCCAAACCCTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MUS81 ENSG00000172732 CDS Human protein_coding chr11:65632544 chr11:65632544 synonymous SNV . 0 21 hm5C_associated_SNPs_882 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_882 DeepMRMD:1;iRNA_m5C:1 883 chr19 49611242 49611242 1 + C T COAD 49611242 + 49611222 49611262 41 AGCGGAGCAAGGACAAGGACCGGGACCGGAAGCGGCGAAGC AGCGGAGCAAGGACAAGGACTGGGACCGGAAGCGGCGAAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49611242 chr19:49611242 nonsynonymous SNV 0.907 2 21 hm5C_associated_SNPs_883 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_883 DeepMRMD:1;iRNA_m5C:1 884 chr6 41566581 41566581 1 + C T COAD 41566581 + 41566561 41566601 41 GCAGAGGAAGACAGGCAGCCCGGGCCTCCCCTGGGCGCCCC GCAGAGGAAGACAGGCAGCCTGGGCCTCCCCTGGGCGCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41566581 chr6:41566581 synonymous SNV . 0 21 hm5C_associated_SNPs_884 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_884 DeepMRMD:1;iRNA_m5C:1 885 chr10 75551705 75551705 1 + C T COAD 75551705 + 75551685 75551725 41 AACACAAGAAGACGCTGGAGCGGCTCTTCCCCGGCTTCCGG AACACAAGAAGACGCTGGAGTGGCTCTTCCCCGGCTTCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75551705 chr10:75551705 nonsynonymous SNV 0.975 2 21 hm5C_associated_SNPs_885 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_885 DeepMRMD:1;iRNA_m5C:1 886 chr21 45534115 45534115 1 + C T COAD 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGCACCACTTCCATTTCAAGGGCTCTGTGCACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534115 synonymous SNV . 0 21 hm5C_associated_SNPs_886 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_886 DeepMRMD:1;iRNA_m5C:1 887 chr11 95561126 95561126 1 + C T COAD 95561126 + 95561106 95561146 41 GTAACACCTCCCTCCTCCAACGGTATTAATGAGGAGTTGTC GTAACACCTCCCTCCTCCAATGGTATTAATGAGGAGTTGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95561126 chr11:95561126 synonymous SNV . 0 21 hm5C_associated_SNPs_887 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_887 DeepMRMD:1;iRNA_m5C:1 888 chr16 30939906 30939906 1 + C A COAD 30939906 + 30939886 30939926 41 GGTTCTGAATCCGAGCCAGGCTTTCTCATCCTGCCACCCTG GGTTCTGAATCCGAGCCAGGATTTCTCATCCTGCCACCCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30939906 chr16:30939906 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_888 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_888 DeepMRMD:1;iRNA_m5C:1 889 chr15 99672066 99672066 1 + C A COAD 99672066 + 99672046 99672086 41 GCAGCGAGCCCGACCGGAGCCAGCCGGTCTGTGAGGCATGT GCAGCGAGCCCGACCGGAGCAAGCCGGTCTGTGAGGCATGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99672066 chr15:99672066 synonymous SNV . 0 21 hm5C_associated_SNPs_889 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_889 DeepMRMD:1;iRNA_m5C:1 890 chr19 14024290 14024290 1 + C T COAD 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCCGCCAGTGGTCATAGGAAAAGGCCCGGCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024290 nonsynonymous SNV 0.071 2 21 hm5C_associated_SNPs_890 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_890 DeepMRMD:1;iRNA_m5C:1 891 chr12 112229168 112229168 1 + C T COAD 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCACGGCTGGGGTCGCCATTGCCTCCCATGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229168 chr12:112229168 nonsynonymous SNV 0.169 2 21 hm5C_associated_SNPs_891 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_891 DeepMRMD:1;iRNA_m5C:1 892 chr10 73567716 73567716 1 + C T COAD 73567716 + 73567696 73567736 41 TTCTGGCCATCCACTACTTCCGGGCCCTTGCCAACGACTCT TTCTGGCCATCCACTACTTCTGGGCCCTTGCCAACGACTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73567716 chr10:73567716 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_892 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_892 DeepMRMD:1;iRNA_m5C:1 893 chr16 53338084 53338084 1 + C A COAD 53338084 + 53338064 53338104 41 GTGAAAACCTTAAAGAGGAGCCTCAGTCTTCTGAAGAAGAA GTGAAAACCTTAAAGAGGAGACTCAGTCTTCTGAAGAAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CHD9 ENSG00000177200 CDS Human protein_coding chr16:53338084 chr16:53338084 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_893 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_893 DeepMRMD:1;iRNA_m5C:1 894 chr7 4801817 4801817 1 + C A COAD 4801817 + 4801797 4801837 41 CTTCTTCCTCCACTCCAGCCCTCACCAGCCCTTTGCAGCTC CTTCTTCCTCCACTCCAGCCATCACCAGCCCTTTGCAGCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4801817 chr7:4801817 nonsynonymous SNV 0.991 3 21 hm5C_associated_SNPs_894 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_894 DeepMRMD:1;iRNA_m5C:1 895 chr17 17943131 17943131 1 + C T COAD 17943131 + 17943111 17943151 41 CACCCAGCAGCCCGGCGTGGCCACCAGCCTGCTCTACAGCG CACCCAGCAGCCCGGCGTGGTCACCAGCCTGCTCTACAGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GID4 ENSG00000141034 CDS Human protein_coding chr17:17943131 chr17:17943131 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_895 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_895 DeepMRMD:1;iRNA_m5C:1 896 chr12 112321465 112321465 1 + C T COAD 112321465 + 112321445 112321485 41 TTTTACTCCAAACACCACAGCCGGACTATCCCAAAGGATAT TTTTACTCCAAACACCACAGTCGGACTATCCCAAAGGATAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321465 chr12:112321465 synonymous SNV . 0 21 hm5C_associated_SNPs_896 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_896 DeepMRMD:1;iRNA_m5C:1 897 chr10 45486398 45486398 1 + C T COAD 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGTGGACAAAATTAAAAGACTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486398 nonsynonymous SNV 0.958 4 21 hm5C_associated_SNPs_897 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_897 DeepMRMD:1;iRNA_m5C:1 898 chr11 58959625 58959625 1 + C T COAD 58959625 + 58959605 58959645 41 CCTCAGGCTACAAGGGCCCGCAGCCTACGGTAAAACCTGAC CCTCAGGCTACAAGGGCCCGTAGCCTACGGTAAAACCTGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX4 ENSG00000110042 CDS Human protein_coding chr11:58959625 chr11:58959625 stopgain 0.921 0 21 hm5C_associated_SNPs_898 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_898 DeepMRMD:1;iRNA_m5C:1 899 chr11 65826382 65826382 1 + C T COAD 65826382 + 65826362 65826402 41 CCTCTGAGAGCTCTGGGGACCGGGAGAAAGACTCAACCCGG CCTCTGAGAGCTCTGGGGACTGGGAGAAAGACTCAACCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826382 chr11:65826382 nonsynonymous SNV 0.991 2 21 hm5C_associated_SNPs_899 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_899 DeepMRMD:1;iRNA_m5C:1 900 chr2 89028799 89028799 1 + C T COAD 89028799 + 89028779 89028819 41 TTCCCTGTCCTCCGCAGGCCCGCCAGCTCATCCTGCAGTAT TTCCCTGTCCTCCGCAGGCCTGCCAGCTCATCCTGCAGTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPIA ENSG00000153574 CDS Human protein_coding chr2:89028799 chr2:89028799 nonsynonymous SNV 0.813 4 21 hm5C_associated_SNPs_900 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_900 DeepMRMD:1;iRNA_m5C:1 901 chr7 139107012 139107012 1 + C T COAD 139107012 + 139106992 139107032 41 GAGATCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAAT GAGATCGGAAAGATAAGAAGTGGTCCTATGAGAGTGCTAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107012 chr7:139107012 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_901 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_901 DeepMRMD:1;iRNA_m5C:1 902 chr5 176522651 176522651 1 + C A COAD 176522651 + 176522631 176522671 41 TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGG TCCTCGGAGCAGTGAGGGGCAGCTCTCCTTCCCAGTCCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522651 chr5:176522651 nonsynonymous SNV 0.449 2 21 hm5C_associated_SNPs_902 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_902 DeepMRMD:1;iRNA_m5C:1 903 chr10 103827230 103827230 1 + C T COAD 103827230 + 103827210 103827250 41 GCCCCTCCAGTCCCCTGCTTCGAAGTGAAATCTTCAAACTG GCCCCTCCAGTCCCCTGCTTTGAAGTGAAATCTTCAAACTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control HPS6 ENSG00000166189 CDS Human protein_coding chr10:103827230 chr10:103827230 stopgain 0.816 0 21 hm5C_associated_SNPs_903 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_903 DeepMRMD:1;iRNA_m5C:1 904 chr5 159437849 159437849 1 + C T COAD 159437849 + 159437829 159437869 41 AGAACTGGAAAAAAACATGTCGGATGAAGAGAAACAGGTAA AGAACTGGAAAAAAACATGTTGGATGAAGAGAAACAGGTAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTC1 ENSG00000113312 CDS Human protein_coding chr5:159437849 chr5:159437849 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_904 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_904 DeepMRMD:1;iRNA_m5C:1 905 chr15 64448279 64448279 1 + G T COAD 64448279 - 64448259 64448299 41 AAACCCCTGAAGGATGTGATCATCGCAGACTGCGGCAAGAT AAACCCCTGAAGGATGTGATAATCGCAGACTGCGGCAAGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448279 chr15:64448279 synonymous SNV . 0 21 hm5C_associated_SNPs_905 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_905 DeepMRMD:1;iRNA_m5C:1 906 chr9 104314839 104314839 1 + C T COAD 104314839 + 104314819 104314859 41 CTAAACGGGATGAAGAAGAACGAGAACGAGAAAGGAGGGAG CTAAACGGGATGAAGAAGAATGAGAACGAGAAAGGAGGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RNF20 ENSG00000155827 CDS Human protein_coding chr9:104314839 chr9:104314839 stopgain 0.982 0 21 hm5C_associated_SNPs_906 0 0 1 0 0 nucleus 1 0 1 1 hm5C_site_906 DeepMRMD:1;iRNA_m5C:1 907 chr15 22955235 22955235 1 + C T COAD 22955235 + 22955215 22955255 41 AAGGACCCCAAGAGCGGCTTCGACATAAAAGTACCACGCCG AAGGACCCCAAGAGCGGCTTTGACATAAAAGTACCACGCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22955235 chr15:22955235 synonymous SNV . 0 21 hm5C_associated_SNPs_907 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_907 DeepMRMD:1;iRNA_m5C:1 908 chr8 124146369 124146369 1 + C T COAD 124146369 + 124146349 124146389 41 CATAGGTATATATGAGAGATCGAGAAATTGCTGCCACAGCC CATAGGTATATATGAGAGATTGAGAAATTGCTGCCACAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124146369 chr8:124146369 stopgain 0.987 0 21 hm5C_associated_SNPs_908 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_908 DeepMRMD:1;iRNA_m5C:1 909 chr7 142459804 142459804 1 + C A COAD 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCCCGCGTGTCCACCATCTATCTGCCCACCGCCCCTCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459804 nonsynonymous SNV 0.004 5 21 hm5C_associated_SNPs_909 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_909 DeepMRMD:1;iRNA_m5C:1 910 chr10 60549151 60549151 1 + C T COAD 60549151 + 60549131 60549171 41 TTTCAGTATCATTTAAACAGCGTTCCCGAATGTATGGTGCT TTTCAGTATCATTTAAACAGTGTTCCCGAATGTATGGTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60549151 chr10:60549151 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_910 0 0 1 0 1 nucleus 1 0 1 1 hm5C_site_910 DeepMRMD:1;iRNA_m5C:1 911 chr21 47929258 47929258 1 + C A COAD 47929258 + 47929238 47929278 41 CGCCCTCCACTGAAGGAGTTCTTTGTGGATGATTTTGAGGA CGCCCTCCACTGAAGGAGTTATTTGTGGATGATTTTGAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47929258 chr21:47929258 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_911 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_911 DeepMRMD:1;iRNA_m5C:1 912 chr15 78841245 78841245 1 + C T COAD 78841245 + 78841225 78841265 41 AAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAAGAA AAGAAGAAGCCAAAGCTGAGTGTGAGAAGAAAGAAAAAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78841245 chr15:78841245 nonsynonymous SNV 0.991 0 21 hm5C_associated_SNPs_912 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_912 DeepMRMD:1;iRNA_m5C:1 913 chr14 24886071 24886071 1 + C T COAD 24886071 + 24886051 24886091 41 CCCAGGTGGCCTCCCTGAGTCGGGACCTCCAGTTCCCCTGC CCCAGGTGGCCTCCCTGAGTTGGGACCTCCAGTTCCCCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24886071 chr14:24886071 nonsynonymous SNV 0.584 2 21 hm5C_associated_SNPs_913 0 0 1 0 0 Exosome 1 0 1 1 hm5C_site_913 DeepMRMD:1;iRNA_m5C:1 914 chr4 144390263 144390263 1 + C A COAD 144390263 + 144390243 144390283 41 TGACCAACAGAAGACCTTGGCTCTAAAGAGTACCCGGGAAG TGACCAACAGAAGACCTTGGATCTAAAGAGTACCCGGGAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144390263 chr4:144390263 nonsynonymous SNV 0.978 4 21 hm5C_associated_SNPs_914 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_914 DeepMRMD:1;iRNA_m5C:1 915 chr1 163310211 163310211 1 + C T COAD 163310211 + 163310191 163310231 41 ATATTTCAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT ATATTTCAGAGAAAACCAAGTGTTTGGTAAACATCTTTTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310211 chr1:163310211 nonsynonymous SNV 0.990 2 21 hm5C_associated_SNPs_915 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_915 DeepMRMD:1;iRNA_m5C:1 916 chr4 88967960 88967960 1 + C T COAD 88967960 + 88967940 88967980 41 TGGAAGAGATATTGGAAATTCGCATTCACAAACTACACTAT TGGAAGAGATATTGGAAATTTGCATTCACAAACTACACTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKD2 ENSG00000118762 CDS Human protein_coding chr4:88967960 chr4:88967960 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_916 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_916 DeepMRMD:1;iRNA_m5C:1 917 chr20 55088433 55088433 1 + C T COAD 55088433 + 55088413 55088453 41 GGCACCAAGGAGGATGTGGACGTGCTGAAGACAAGGATGGA GGCACCAAGGAGGATGTGGATGTGCTGAAGACAAGGATGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55088433 chr20:55088433 synonymous SNV . 0 21 hm5C_associated_SNPs_917 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_917 DeepMRMD:1;iRNA_m5C:1 918 chrX 105891593 105891593 1 + C T COAD 105891593 + 105891573 105891613 41 ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCA ACAAACAAAGGGAATTAAACTGGGCATGCCAAGCATCTTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891593 chrX:105891593 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_918 0 0 0 0 1 nucleus 1 0 1 1 hm5C_site_918 DeepMRMD:1;iRNA_m5C:1 919 chr2 38908437 38908437 1 + C T COAD 38908437 + 38908417 38908457 41 TCCAGGTGCTCTGGACCCCTCGGGTGCTGTCAAATGGCGTC TCCAGGTGCTCTGGACCCCTTGGGTGCTGTCAAATGGCGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908437 chr2:38908437 nonsynonymous SNV 0.332 1 21 hm5C_associated_SNPs_919 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_919 DeepMRMD:1;iRNA_m5C:1 920 chr1 22333994 22333994 1 + C T COAD 22333994 + 22333974 22334014 41 TGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGT TGTGTGCTGGAGGGTACATCTGCTCCGGCTGCAACGTGAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333994 chr1:22333994 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_920 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_920 DeepMRMD:1;iRNA_m5C:1 921 chr12 58109596 58109596 1 + C T COAD 58109596 + 58109576 58109616 41 GACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTA GACTACATCGATCGCGTGGATGAGCCCTTGTCCTGCTCTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58109596 chr12:58109596 synonymous SNV . 0 21 hm5C_associated_SNPs_921 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_921 DeepMRMD:1;iRNA_m5C:1 922 chr16 77232113 77232113 1 + C T COAD 77232113 + 77232093 77232133 41 GGGTGAAGAAAGAGGAGGACCGGCTCTTCATTCGTTACCCA GGGTGAAGAAAGAGGAGGACTGGCTCTTCATTCGTTACCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MON1B ENSG00000103111 CDS Human protein_coding chr16:77232113 chr16:77232113 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_922 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_922 DeepMRMD:1;iRNA_m5C:1 923 chr20 37662905 37662905 1 + C T COAD 37662905 + 37662885 37662925 41 CTACATGAGAGATGTGACTGCCATTGAATCGGCCTGGCTGT CTACATGAGAGATGTGACTGTCATTGAATCGGCCTGGCTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37662905 chr20:37662905 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_923 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_923 DeepMRMD:1;iRNA_m5C:1 924 chr20 2840990 2840990 1 + C T COAD 2840990 + 2840970 2841010 41 ATGGGCTTCATGGTGACTTCCGGAGACACTTCAGCATGGGC ATGGGCTTCATGGTGACTTCTGGAGACACTTCAGCATGGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840990 chr20:2840990 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_924 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_924 DeepMRMD:1;iRNA_m5C:1 925 chr11 65402797 65402797 1 + C T COAD 65402797 + 65402777 65402817 41 ATGAGGGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAAC ATGAGGGTGACCCAGCATGGTGCAGCGCCATCCTCAGCAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402797 chr11:65402797 nonsynonymous SNV 0.957 4 21 hm5C_associated_SNPs_925 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_925 DeepMRMD:1;iRNA_m5C:1 926 chr2 233681615 233681615 1 + C T COAD 233681615 + 233681595 233681635 41 AAGAGAGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGC AAGAGAGGCAGAAATGAGGGTAAAACGGGAAGAGGAAGAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681615 chr2:233681615 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_926 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_926 DeepMRMD:1;iRNA_m5C:1 927 chr20 39795148 39795148 1 + C T COAD 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGTTGAGCACATGCTAATGCGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795148 nonsynonymous SNV 0.844 5 21 hm5C_associated_SNPs_927 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_927 DeepMRMD:1;iRNA_m5C:1 928 chr9 135942539 135942539 1 + C T COAD 135942539 + 135942519 135942559 41 GGCCCAGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGC GGCCCAGTGTCTGAAGGTTATTGATCCCCGAGCCCTGACGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942539 chr9:135942539 nonsynonymous SNV 0.336 4 21 hm5C_associated_SNPs_928 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_928 DeepMRMD:1;iRNA_m5C:1 929 chr1 212792728 212792728 1 + C T COAD 212792728 + 212792708 212792748 41 GAAGCTGGAAAGTGTGAATGCTGAACTGAAGGCTCAGATTG GAAGCTGGAAAGTGTGAATGTTGAACTGAAGGCTCAGATTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ATF3 ENSG00000162772 CDS Human protein_coding chr1:212792728 chr1:212792728 nonsynonymous SNV 0.953 1 21 hm5C_associated_SNPs_929 0 0 1 0 1 Cytoplasm 1 0 1 1 hm5C_site_929 DeepMRMD:1;iRNA_m5C:1 930 chr4 184192371 184192371 1 + C T COAD 184192371 + 184192351 184192391 41 CTGTATTTCAACCAAACCAGCCGTTAGTAGATTCTATAGAC CTGTATTTCAACCAAACCAGTCGTTAGTAGATTCTATAGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184192371 chr4:184192371 nonsynonymous SNV 0.021 0 21 hm5C_associated_SNPs_930 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_930 DeepMRMD:1;iRNA_m5C:1 931 chr3 52245357 52245357 1 + C T COAD 52245357 + 52245337 52245377 41 ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGG ACGAGTTCTCTGATTGACACTGTACGGTCCTATGCTGCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245357 chr3:52245357 synonymous SNV . 0 21 hm5C_associated_SNPs_931 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_931 DeepMRMD:1;iRNA_m5C:1 932 chr18 7955226 7955226 1 + C T COAD 7955226 + 7955206 7955246 41 GGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACG GGGATGGGCCCATTGTGGCCTGAGAGGTGGAGTACTGCACG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955226 chr18:7955226 stopgain 0.987 1 21 hm5C_associated_SNPs_932 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_932 DeepMRMD:1;iRNA_m5C:1 933 chr15 68583512 68583512 1 + C T DLBC 68583512 + 68583492 68583532 41 GCCTGGCTGCCCGAGCAGTTCGGGCTAATGACATTAACTAC GCCTGGCTGCCCGAGCAGTTTGGGCTAATGACATTAACTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583512 chr15:68583512 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_933 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_933 DeepMRMD:1;iRNA_m5C:1 934 chr2 28550197 28550197 1 + C T DLBC 28550197 + 28550177 28550217 41 GGAGCAAGTCCTGGCCTTTGCAGTTGCAAAAACTGGCTGCA GGAGCAAGTCCTGGCCTTTGTAGTTGCAAAAACTGGCTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28550197 chr2:28550197 nonsynonymous SNV 0.267 1 21 hm5C_associated_SNPs_934 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_934 DeepMRMD:1;iRNA_m5C:1 935 chr2 74784099 74784099 1 + C T DLBC 74784099 + 74784079 74784119 41 AGCCTTCCCTGAACCTGGTACTGCAACTGGCAGTGGCATCA AGCCTTCCCTGAACCTGGTATTGCAACTGGCAGTGGCATCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOK1 ENSG00000115325 CDS Human protein_coding chr2:74784099 chr2:74784099 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_935 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_935 DeepMRMD:1;iRNA_m5C:1 936 chr22 38313800 38313800 1 + C T ESCA 38313800 + 38313780 38313820 41 TGGAACCAGAAGATGTGGCTCAGGTAGGCAGATACCTGGAG TGGAACCAGAAGATGTGGCTTAGGTAGGCAGATACCTGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38313800 chr22:38313800 stopgain 0.850 0 21 hm5C_associated_SNPs_936 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_936 DeepMRMD:1;iRNA_m5C:1 937 chr3 57293965 57293965 1 + C T ESCA 57293965 + 57293945 57293985 41 ATGTTGTTTATGAAACTATGCGCCAAATCTTAGCTGCCCGG ATGTTGTTTATGAAACTATGTGCCAAATCTTAGCTGCCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APPL1 ENSG00000157500 CDS Human protein_coding chr3:57293965 chr3:57293965 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_937 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_937 DeepMRMD:1;iRNA_m5C:1 938 chr1 46497074 46497074 1 + C T ESCA 46497074 + 46497054 46497094 41 GGCCTACAGCTATGGAGACCCGAGGCCGTGGGACCTCACAG GGCCTACAGCTATGGAGACCTGAGGCCGTGGGACCTCACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46497074 chr1:46497074 stopgain 0.945 0 21 hm5C_associated_SNPs_938 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_938 DeepMRMD:1;iRNA_m5C:1 939 chr16 12662432 12662432 1 + C T ESCA 12662432 + 12662412 12662452 41 TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC TCCCGCTTCCCCAAACTGTCTCGGGGTCAGCCCCGGGAGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662432 chr16:12662432 synonymous SNV . 0 21 hm5C_associated_SNPs_939 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_939 DeepMRMD:1;iRNA_m5C:1 940 chrX 70787359 70787359 1 + C T ESCA 70787359 + 70787339 70787379 41 CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGTGTACTC CCCTATTTTAGATTCTGAAGTGTGTTCCCAATAGTGTACTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70787359 chrX:70787359 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_940 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_940 DeepMRMD:1;iRNA_m5C:1 941 chr11 46392886 46392886 1 + C G ESCA 46392886 + 46392866 46392906 41 TTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATTGTGGC TTCCAGCAGAAGTTCACCTTGCACAGCAAGGAGATTGTGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46392886 chr11:46392886 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_941 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_941 DeepMRMD:1;iRNA_m5C:1 942 chr7 142457375 142457375 1 + C G ESCA 142457375 + 142457355 142457395 41 TTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGCCT TTACCTTTGTGGCAGCTGCTGGTGAGTATCATGCCCTGCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457375 chr7:142457375 nonsynonymous SNV 0.046 1 21 hm5C_associated_SNPs_942 0 0 0 1 1 Cytosol 1 0 1 1 hm5C_site_942 DeepMRMD:1;iRNA_m5C:1 943 chr9 130236144 130236144 1 + C A ESCA 130236144 + 130236124 130236164 41 ATTCTGGAGCAAGATGGAATCGAGAACTCTCGGGACAGCCC ATTCTGGAGCAAGATGGAATAGAGAACTCTCGGGACAGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130236144 chr9:130236144 synonymous SNV . 0 21 hm5C_associated_SNPs_943 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_943 DeepMRMD:1;iRNA_m5C:1 944 chr19 10812147 10812147 1 + C T ESCA 10812147 + 10812127 10812167 41 GACAGTCAAGATGGCGGGAGCAGCTACCCAGGCTTCCCTGG GACAGTCAAGATGGCGGGAGTAGCTACCCAGGCTTCCCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812147 chr19:10812147 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_944 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_944 DeepMRMD:1;iRNA_m5C:1 945 chr5 102611913 102611913 1 + C T ESCA 102611913 + 102611893 102611933 41 ACGCTCCAAACAGCTAGATGCAGGACTTGCCCGTTCCTCTC ACGCTCCAAACAGCTAGATGTAGGACTTGCCCGTTCCTCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C5orf30 ENSG00000181751 CDS Human protein_coding chr5:102611913 chr5:102611913 nonsynonymous SNV 0.236 0 21 hm5C_associated_SNPs_945 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_945 DeepMRMD:1;iRNA_m5C:1 946 chr2 74757418 74757418 1 + C A ESCA 74757418 + 74757398 74757438 41 GATACCAGGACCCGGGAGGCCTCAGAGAACTCTGGAACCCG GATACCAGGACCCGGGAGGCATCAGAGAACTCTGGAACCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control HTRA2 ENSG00000115317 CDS Human protein_coding chr2:74757418 chr2:74757418 synonymous SNV . 0 21 hm5C_associated_SNPs_946 0 0 1 0 0 exosome 1 0 1 1 hm5C_site_946 DeepMRMD:1;iRNA_m5C:1 947 chr10 74034859 74034859 1 + C T ESCA 74034859 + 74034839 74034879 41 TCTCCCTTCCTCCCTGGCTTCAGCCAGTCCCTGACGCTGAG TCTCCCTTCCTCCCTGGCTTTAGCCAGTCCCTGACGCTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDIT4 ENSG00000168209 CDS Human protein_coding chr10:74034859 chr10:74034859 synonymous SNV . 0 21 hm5C_associated_SNPs_947 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_947 DeepMRMD:1;iRNA_m5C:1 948 chr3 184102443 184102443 1 + C A ESCA 184102443 + 184102423 184102463 41 AGAGCTTCGGGGGCACGTGGCTGCCCTGCCCTACTGTGGGC AGAGCTTCGGGGGCACGTGGATGCCCTGCCCTACTGTGGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184102443 chr3:184102443 nonsynonymous SNV 0.985 0 21 hm5C_associated_SNPs_948 0 0 1 0 1 nucleus 1 0 1 1 hm5C_site_948 DeepMRMD:1;iRNA_m5C:1 949 chrX 53223826 53223826 1 + G A ESCA 53223826 - 53223806 53223846 41 GCCCAGTCCACTGGCATCATCGAGCACGGCCTCCTCTACAA GCCCAGTCCACTGGCATCATTGAGCACGGCCTCCTCTACAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM5C ENSG00000126012 CDS Human protein_coding chrX:53223826 chrX:53223826 nonsynonymous SNV 0.260 1 21 hm5C_associated_SNPs_949 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_949 DeepMRMD:1;iRNA_m5C:1 950 chr1 155583316 155583316 1 + C G ESCA 155583316 + 155583296 155583336 41 TGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACA TGTACCACTGGGGAAGAAATGTTGGCTCAGTATTTACAACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583316 chr1:155583316 nonsynonymous SNV 0.772 0 21 hm5C_associated_SNPs_950 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_950 DeepMRMD:1;iRNA_m5C:1 951 chr7 130021558 130021558 1 + C G ESCA 130021558 + 130021538 130021578 41 TCCAGGCGGTCAAGATCTTTCTGGAGTCCCACGGCATCAGC TCCAGGCGGTCAAGATCTTTGTGGAGTCCCACGGCATCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021558 chr7:130021558 nonsynonymous SNV 0.067 4 21 hm5C_associated_SNPs_951 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_951 DeepMRMD:1;iRNA_m5C:1 952 chr3 41278166 41278166 1 + C T ESCA 41278166 + 41278146 41278186 41 TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGCCAA TTCAGTTGAGCTGACCAGCTTTCTCTTCAGAACAGAGCCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41278166 chr3:41278166 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_952 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_952 DeepMRMD:1;iRNA_m5C:1 953 chr1 22333434 22333434 1 + C G ESCA 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333434 synonymous SNV . 0 21 hm5C_associated_SNPs_953 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_953 DeepMRMD:1;iRNA_m5C:1 954 chr2 74683272 74683272 1 + C G ESCA 74683272 + 74683252 74683292 41 CTCTCCACTTCGGGACCTATCAGGAGGGTTAGGGGGTCAGG CTCTCCACTTCGGGACCTATGAGGAGGGTTAGGGGGTCAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INO80B ENSG00000115274 CDS Human protein_coding chr2:74683272 chr2:74683272 stopgain 0.996 0 21 hm5C_associated_SNPs_954 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_954 DeepMRMD:1;iRNA_m5C:1 955 chr16 74339565 74339565 1 + C T GBM 74339565 + 74339545 74339585 41 AAAAAGGATAGGAAAGAGGACAAGGAGAAAGATAAAGATAA AAAAAGGATAGGAAAGAGGATAAGGAGAAAGATAAAGATAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74339565 chr16:74339565 synonymous SNV . 0 21 hm5C_associated_SNPs_955 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_955 DeepMRMD:1;iRNA_m5C:1 956 chr19 14150321 14150321 1 + C T GBM 14150321 + 14150301 14150341 41 CCCGCCTCTCTCCTCACAGCCGTTCCAACAAAACCCAGACT CCCGCCTCTCTCCTCACAGCTGTTCCAACAAAACCCAGACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14150321 chr19:14150321 nonsynonymous SNV 0.033 2 21 hm5C_associated_SNPs_956 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_956 DeepMRMD:1;iRNA_m5C:1 957 chr8 126194360 126194360 1 + C A GBM 126194360 + 126194340 126194380 41 CTTAGGTGAAAGAAGAACGTCCAGAAAAAATACCAGATTTA CTTAGGTGAAAGAAGAACGTACAGAAAAAATACCAGATTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSMCE2 ENSG00000156831 CDS Human protein_coding chr8:126194360 chr8:126194360 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_957 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_957 DeepMRMD:1;iRNA_m5C:1 958 chr17 40651020 40651020 1 + C T GBM 40651020 + 40651000 40651040 41 CTGTTATCCTTGGTATCATCCATATGCTGTTTGGAGTCAGC CTGTTATCCTTGGTATCATCTATATGCTGTTTGGAGTCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40651020 chr17:40651020 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_958 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_958 DeepMRMD:1;iRNA_m5C:1 959 chr19 47700626 47700626 1 + C A GBM 47700626 + 47700606 47700646 41 CCTGACCTGCTTCCTGAGGACTTTGTCAGGTTGGTGTCAGT CCTGACCTGCTTCCTGAGGAATTTGTCAGGTTGGTGTCAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SAE1 ENSG00000142230 CDS Human protein_coding chr19:47700626 chr19:47700626 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_959 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_959 DeepMRMD:1;iRNA_m5C:1 960 chr17 7476181 7476181 1 + C T GBM 7476181 + 7476161 7476201 41 TGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA TGTCTGCGAGCCAGGATTCCTGGTAAGAAAGGCATTTGCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476181 chr17:7476181 stopgain 0.996 0 21 hm5C_associated_SNPs_960 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_960 DeepMRMD:1;iRNA_m5C:1 961 chr6 31604122 31604122 1 + C A GBM 31604122 + 31604102 31604142 41 AGTTGCCGGCTGGAGGAGTTCTCTACCCTCCACCTTCCTTC AGTTGCCGGCTGGAGGAGTTATCTACCCTCCACCTTCCTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604122 chr6:31604122 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_961 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_961 DeepMRMD:1;iRNA_m5C:1 962 chr16 1817164 1817164 1 + C A GBM 1817164 + 1817144 1817184 41 CTCCAGATGGCCAGTGGGATCTGAGCAACTATCACCTAATG CTCCAGATGGCCAGTGGGATATGAGCAACTATCACCTAATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1817164 chr16:1817164 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_962 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_962 DeepMRMD:1;iRNA_m5C:1 963 chr7 133164812 133164812 1 + C T GBM 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTCGAATTGTCCTCCCATGCCATCAGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164812 nonsynonymous SNV 0.986 1 21 hm5C_associated_SNPs_963 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_963 DeepMRMD:1;iRNA_m5C:1 964 chr11 32953991 32953991 1 + C T GBM 32953991 + 32953971 32954011 41 TGCTCAGTCTTACTCATCTGCGATTCCATCATCAGGGTATC TGCTCAGTCTTACTCATCTGTGATTCCATCATCAGGGTATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QSER1 ENSG00000060749 CDS Human protein_coding chr11:32953991 chr11:32953991 nonsynonymous SNV 0.294 0 21 hm5C_associated_SNPs_964 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_964 DeepMRMD:1;iRNA_m5C:1 965 chrX 154005135 154005135 1 + C T GBM 154005135 + 154005115 154005155 41 AAAAGAGGTAGAATTGGTTTCTGAGTAGTGAAGGCCACTTG AAAAGAGGTAGAATTGGTTTTTGAGTAGTGAAGGCCACTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 CDS Human protein_coding chrX:154005135 chrX:154005135 nonsynonymous SNV 0.444 1 21 hm5C_associated_SNPs_965 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_965 DeepMRMD:1;iRNA_m5C:1 966 chr17 64783073 64783073 1 + C A GBM 64783073 + 64783053 64783093 41 AAAATCCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG AAAATCCTTGTCCAAGGAGGATGTTTCTGTCTGCAAAGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64783073 chr17:64783073 nonsynonymous SNV 0.978 4 21 hm5C_associated_SNPs_966 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_966 DeepMRMD:1;iRNA_m5C:1 967 chr4 53579475 53579475 1 + C A GBM 53579475 + 53579455 53579495 41 CACAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGA CACAGAAGGGTAAAGTAAGTATCCATAAAACCCAGAGAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579475 chr4:53579475 . . 0 21 hm5C_associated_SNPs_967 0 0 1 2 0 unknown 1 0 1 1 hm5C_site_967 DeepMRMD:1;iRNA_m5C:1 968 chr1 40922642 40922642 1 + C A GBM 40922642 + 40922622 40922662 41 GTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGG GTTAACCTTCAAGGACGTATATGTGGACTTCACTCAGGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZFP69B ENSG00000187801 CDS Human protein_coding chr1:40922642 chr1:40922642 nonsynonymous SNV 0.984 1 21 hm5C_associated_SNPs_968 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_968 DeepMRMD:1;iRNA_m5C:1 969 chr1 45270421 45270421 1 + C T GBM 45270421 + 45270401 45270441 41 CTGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCA CTGGGTATCCTGCGGTACTTTGCCTCCTACATGGAGCAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270421 chr1:45270421 synonymous SNV . 0 21 hm5C_associated_SNPs_969 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_969 DeepMRMD:1;iRNA_m5C:1 970 chr15 78838067 78838067 1 + C T GBM 78838067 + 78838047 78838087 41 AGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATG AGTGACCCTAGTGGAAATTATGGGGGATGGAAGGCCACATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78838067 chr15:78838067 synonymous SNV . 0 21 hm5C_associated_SNPs_970 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_970 DeepMRMD:1;iRNA_m5C:1 971 chr2 153494168 153494168 1 + C T GBM 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCTGTCTTTGTCTGGTTTGTGAAAGCATATAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494168 nonsynonymous SNV 0.987 4 21 hm5C_associated_SNPs_971 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_971 DeepMRMD:1;iRNA_m5C:1 972 chr1 12052619 12052619 1 + C G GBM 12052619 + 12052599 12052639 41 TCCCCACCTCCAGACACGTACAGGAATGCAGAACTGGACCC TCCCCACCTCCAGACACGTAGAGGAATGCAGAACTGGACCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12052619 chr1:12052619 stopgain 0.997 0 21 hm5C_associated_SNPs_972 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_972 DeepMRMD:1;iRNA_m5C:1 973 chr12 101711355 101711355 1 + C T GBM 101711355 + 101711335 101711375 41 GAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTT GAAATCGAAGAGGAACCTGCTGCAGGAGATGATGAAGAGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711355 chr12:101711355 synonymous SNV . 0 21 hm5C_associated_SNPs_973 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_973 DeepMRMD:1;iRNA_m5C:1 974 chr5 149755836 149755836 1 + C T GBM 149755836 + 149755816 149755856 41 CCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAGATAGTGA CCAGCAGAGGATTCTTCAAGTAGTGAGGAATCAGATAGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755836 chr5:149755836 synonymous SNV . 0 21 hm5C_associated_SNPs_974 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_974 DeepMRMD:1;iRNA_m5C:1 975 chr19 55817715 55817715 1 + C A GBM 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC GTCTTCCAAAAGCCCGTCCGATTCCAGGTGGACATCAGCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817715 synonymous SNV . 0 21 hm5C_associated_SNPs_975 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_975 DeepMRMD:1;iRNA_m5C:1 976 chr17 73997536 73997536 1 + C T GBM 73997536 + 73997516 73997556 41 TTCCAGAAGGTAGAGAAGATCGGAGAGGGCACCTATGGGGT TTCCAGAAGGTAGAGAAGATTGGAGAGGGCACCTATGGGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control CDK3 ENSG00000250506 CDS Human protein_coding chr17:73997536 chr17:73997536 synonymous SNV . 0 21 hm5C_associated_SNPs_976 0 0 0 0 2 cytosol 1 0 1 1 hm5C_site_976 DeepMRMD:1;iRNA_m5C:1 977 chr3 9489393 9489393 1 + C T GBM 9489393 + 9489373 9489413 41 ATTGCTGCAGAAAAACTAGTCCCCAAGCCACCTCCAGCAAA ATTGCTGCAGAAAAACTAGTTCCCAAGCCACCTCCAGCAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9489393 chr3:9489393 synonymous SNV . 0 21 hm5C_associated_SNPs_977 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_977 DeepMRMD:1;iRNA_m5C:1 978 chr3 148562321 148562321 1 + C A GBM 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTCGACAAGTTAGAATTTTATGTCCTGCCTGTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562321 nonsynonymous SNV 0.983 1 21 hm5C_associated_SNPs_978 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_978 DeepMRMD:1;iRNA_m5C:1 979 chr1 28600565 28600565 1 + C T GBM 28600565 + 28600545 28600585 41 CCTCAGCTGACATCCTGGAGCCCTCTCCACACCCAGACATG CCTCAGCTGACATCCTGGAGTCCTCTCCACACCCAGACATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600565 chr1:28600565 nonsynonymous SNV 0.975 0 21 hm5C_associated_SNPs_979 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_979 DeepMRMD:1;iRNA_m5C:1 980 chr1 22329556 22329556 1 + C T GBM 22329556 + 22329536 22329576 41 CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT CGTTGTCCATGGTGAGGATGTGGTCCCCTACAGCTGGCCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329556 chr1:22329556 nonsynonymous SNV 0.868 1 21 hm5C_associated_SNPs_980 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_980 DeepMRMD:1;iRNA_m5C:1 981 chr20 55968365 55968365 1 + C G GBM 55968365 + 55968345 55968385 41 TGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTT TGGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGGACTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968365 chr20:55968365 nonsynonymous SNV 0.982 4 21 hm5C_associated_SNPs_981 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_981 DeepMRMD:1;iRNA_m5C:1 982 chr5 17275370 17275370 1 + C T GBM 17275370 + 17275350 17275390 41 AAGAAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAA AAGAAGGGCTACAATGTGAATGACGAGAAAGCCAAGGAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275370 chr5:17275370 synonymous SNV . 0 21 hm5C_associated_SNPs_982 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_982 DeepMRMD:1;iRNA_m5C:1 983 chr14 105936268 105936268 1 + C T GBM 105936268 + 105936248 105936288 41 CCCTGCCCCCAGTCAAGCGGCGGCGGATGAACTGGATCGAC CCCTGCCCCCAGTCAAGCGGTGGCGGATGAACTGGATCGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936268 chr14:105936268 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_983 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_983 DeepMRMD:1;iRNA_m5C:1 984 chr7 142460295 142460295 1 + C T GBM 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGATGAGCTGCAGTGCCTGGATGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460295 synonymous SNV . 0 21 hm5C_associated_SNPs_984 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_984 DeepMRMD:1;iRNA_m5C:1 985 chr3 39152446 39152446 1 + C T GBM 39152446 + 39152426 39152466 41 TTTTCCTCTGGCTCATAGGCCGCCATGACAAGGCCAAAGAG TTTTCCTCTGGCTCATAGGCTGCCATGACAAGGCCAAAGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTC21A ENSG00000168026 CDS Human protein_coding chr3:39152446 chr3:39152446 nonsynonymous SNV 0.029 1 21 hm5C_associated_SNPs_985 0 0 0 0 1 nucleus 1 0 1 1 hm5C_site_985 DeepMRMD:1;iRNA_m5C:1 986 chr18 77474881 77474881 1 + C G HNSC 77474881 + 77474861 77474901 41 GAAGTCCTCCTCCTCCGCCTCTGATGGCGAAAGCGAGGGGA GAAGTCCTCCTCCTCCGCCTGTGATGGCGAAAGCGAGGGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77474881 chr18:77474881 nonsynonymous SNV 0.009 3 21 hm5C_associated_SNPs_986 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_986 DeepMRMD:1;iRNA_m5C:1 987 chr7 101813790 101813790 1 + C G HNSC 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GCTCTCATCGGCCAATCACTGCCTCCAGCTGGCCTCACAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813790 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_987 0 0 1 0 2 Exosome 1 0 1 1 hm5C_site_987 DeepMRMD:1;iRNA_m5C:1 988 chr1 198233296 198233296 1 + C T HNSC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTTATTGAAGATAATGAACTAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233296 synonymous SNV . 0 21 hm5C_associated_SNPs_988 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_988 DeepMRMD:1;iRNA_m5C:1 989 chr5 56526784 56526784 1 + C T HNSC 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTATTGGGTGTCCTAATGGAGGTAAAATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526784 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_989 0 0 1 1 1 Ribosome 1 0 1 1 hm5C_site_989 DeepMRMD:1;iRNA_m5C:1 990 chr19 30502098 30502098 1 + C G HNSC 30502098 + 30502078 30502118 41 CAGCACTGGCAGTGGCCACTCTGCCCAGGAGCTGCCGACCA CAGCACTGGCAGTGGCCACTGTGCCCAGGAGCTGCCGACCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30502098 chr19:30502098 nonsynonymous SNV 0.193 1 21 hm5C_associated_SNPs_990 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_990 DeepMRMD:1;iRNA_m5C:1 991 chr1 154313342 154313342 1 + C T HNSC 154313342 + 154313322 154313362 41 CTGTGCAGTGTGGAGGTCATCCGTCTGGGCCACAGCTACTT CTGTGCAGTGTGGAGGTCATTCGTCTGGGCCACAGCTACTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154313342 chr1:154313342 synonymous SNV . 0 21 hm5C_associated_SNPs_991 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_991 DeepMRMD:1;iRNA_m5C:1 992 chr7 65419170 65419170 1 + C G HNSC 65419170 + 65419150 65419190 41 TACTTTGTGCTGAAGGAGTTCTGCATCATCTGCATCGTCAC TACTTTGTGCTGAAGGAGTTGTGCATCATCTGCATCGTCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VKORC1L1 ENSG00000196715 CDS Human protein_coding chr7:65419170 chr7:65419170 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_992 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_992 DeepMRMD:1;iRNA_m5C:1 993 chr7 128407640 128407640 1 + C T HNSC 128407640 + 128407620 128407660 41 GAAGAGACCAAAGACTGGATCCTTCCCTCAGACTATGATCA GAAGAGACCAAAGACTGGATTCTTCCCTCAGACTATGATCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407640 chr7:128407640 synonymous SNV . 0 21 hm5C_associated_SNPs_993 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_993 DeepMRMD:1;iRNA_m5C:1 994 chr11 122817446 122817446 1 + C T HNSC 122817446 + 122817426 122817466 41 AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA AGCCGTAGCAATTCTGAAGGTTATCTGTTTCAACTGGAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817446 chr11:122817446 synonymous SNV . 0 21 hm5C_associated_SNPs_994 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_994 DeepMRMD:1;iRNA_m5C:1 995 chr1 117631430 117631430 1 + C G HNSC 117631430 + 117631410 117631450 41 GTGATTCTTCCAGGGCACCTCAACACCTTTGCTTCGAATAG GTGATTCTTCCAGGGCACCTGAACACCTTTGCTTCGAATAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117631430 chr1:117631430 stopgain 0.337 0 21 hm5C_associated_SNPs_995 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_995 DeepMRMD:1;iRNA_m5C:1 996 chr1 89298809 89298809 1 + C T HNSC 89298809 + 89298789 89298829 41 TGGGGCTAGCGAGAAAGATGCAGAGGATGTAAAAAAGCACC TGGGGCTAGCGAGAAAGATGTAGAGGATGTAAAAAAGCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKN2 ENSG00000065243 CDS Human protein_coding chr1:89298809 chr1:89298809 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_996 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_996 DeepMRMD:1;iRNA_m5C:1 997 chr16 2569563 2569563 1 + C T HNSC 2569563 + 2569543 2569583 41 AGCTTCCTCCAGCTGGGCGCCGGCCTGAGCGTGGGCCTGAG AGCTTCCTCCAGCTGGGCGCTGGCCTGAGCGTGGGCCTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569563 chr16:2569563 synonymous SNV . 0 21 hm5C_associated_SNPs_997 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_997 DeepMRMD:1;iRNA_m5C:1 998 chr8 98657027 98657027 1 + C T HNSC 98657027 + 98657007 98657047 41 GGCGGCGGCCGTGCCGGCCGCGGCCCCCGACGACCTGGCCT GGCGGCGGCCGTGCCGGCCGTGGCCCCCGACGACCTGGCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657027 chr8:98657027 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_998 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_998 DeepMRMD:1;iRNA_m5C:1 999 chr19 50905073 50905073 1 + C T HNSC 50905073 + 50905053 50905093 41 CTGGGGGGCCCCCACCATCCCGCGGCTCCGTGCCTGTGCTC CTGGGGGGCCCCCACCATCCTGCGGCTCCGTGCCTGTGCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905073 chr19:50905073 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_999 2 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_999 DeepMRMD:1;iRNA_m5C:1 Colorectal cancer 10 Colorectal cancer 10 1000 chr9 33917126 33917126 1 + C G HNSC 33917126 + 33917106 33917146 41 GCCTTCCAATGACAACAGCTCAGATTTGCTTTACGACGACT GCCTTCCAATGACAACAGCTGAGATTTGCTTTACGACGACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917126 chr9:33917126 stopgain 1.000 1 21 hm5C_associated_SNPs_1000 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1000 DeepMRMD:1;iRNA_m5C:1 1001 chrX 100880789 100880789 1 + C G HNSC 100880789 + 100880769 100880809 41 TTTTGAATTTGGCTGAAAATCCAGCCATGACTAGGGAACTG TTTTGAATTTGGCTGAAAATGCAGCCATGACTAGGGAACTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880789 chrX:100880789 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1001 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1001 DeepMRMD:1;iRNA_m5C:1 1002 chr12 57560805 57560805 1 + C G HNSC 57560805 + 57560785 57560825 41 TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTCG TGGATGACGACTGTGGGGACGGCTCTGATGAGTCTGCTTCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57560805 chr12:57560805 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_1002 0 0 1 0 2 Exosome 1 0 1 1 hm5C_site_1002 DeepMRMD:1;iRNA_m5C:1 1003 chrX 153008774 153008774 1 + C T HNSC 153008774 + 153008754 153008794 41 GACGCGGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTC GACGCGGGCATTGCCCTGCTTTCCATCACCCACCGGCCCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153008774 chrX:153008774 synonymous SNV . 0 21 hm5C_associated_SNPs_1003 0 0 1 0 2 nucleolus 1 0 1 1 hm5C_site_1003 DeepMRMD:1;iRNA_m5C:1 1004 chr6 114181119 114181119 1 + C T HNSC 114181119 + 114181099 114181139 41 GAGCCCGGCTCGCCCACGGCCGCGGAGGGAGAGGCCGCGTC GAGCCCGGCTCGCCCACGGCTGCGGAGGGAGAGGCCGCGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MARCKS ENSG00000155130 CDS Human other chr6:114181119 chr6:114181119 synonymous SNV . 0 21 hm5C_associated_SNPs_1004 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1004 DeepMRMD:1;iRNA_m5C:1 1005 chr10 16526619 16526619 1 + C G HNSC 16526619 + 16526599 16526639 41 ATTAAATCAGGAGACAGAAGCCATAAAGGAAGAACTGTTGT ATTAAATCAGGAGACAGAAGGCATAAAGGAAGAACTGTTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTER ENSG00000165983 CDS Human protein_coding chr10:16526619 chr10:16526619 nonsynonymous SNV 0.875 4 21 hm5C_associated_SNPs_1005 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_1005 DeepMRMD:1;iRNA_m5C:1 1006 chr6 33656530 33656530 1 + C G HNSC 33656530 + 33656510 33656550 41 AACATCATCATTGCCTTCTTCTACCCTTACATGGAGGGCGC AACATCATCATTGCCTTCTTGTACCCTTACATGGAGGGCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33656530 chr6:33656530 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_1006 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1006 DeepMRMD:1;iRNA_m5C:1 1007 chr1 22332233 22332233 1 + C G HNSC 22332233 + 22332213 22332253 41 CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT CCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCTGTTTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332233 chr1:22332233 nonsynonymous SNV 0.911 4 21 hm5C_associated_SNPs_1007 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1007 DeepMRMD:1;iRNA_m5C:1 1008 chr22 32498104 32498104 1 + C A HNSC 32498104 + 32498084 32498124 41 GGGAGCTGCATGGAGCCCAGCAACTGTCCCACGATTATCTG GGGAGCTGCATGGAGCCCAGAAACTGTCCCACGATTATCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32498104 chr22:32498104 nonsynonymous SNV 0.937 2 21 hm5C_associated_SNPs_1008 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1008 DeepMRMD:1;iRNA_m5C:1 1009 chr6 149691182 149691182 1 + C T HNSC 149691182 + 149691162 149691202 41 TTCAGGTTTTACATGACCTGCGACAAAAATTCCCTGAAGTA TTCAGGTTTTACATGACCTGTGACAAAAATTCCCTGAAGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAB2 ENSG00000055208 CDS Human protein_coding chr6:149691182 chr6:149691182 stopgain 1.000 1 21 hm5C_associated_SNPs_1009 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1009 DeepMRMD:1;iRNA_m5C:1 1010 chr16 3712055 3712055 1 + G A HNSC 3712055 - 3712035 3712075 41 CCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAG CCCGCCACTTCCTGCGCATGTAGCAGCTGGCCAAGACCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712055 chr16:3712055 stopgain 1.000 1 21 hm5C_associated_SNPs_1010 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1010 DeepMRMD:1;iRNA_m5C:1 1011 chr7 92987685 92987685 1 + C G HNSC 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATCCCATATGAATAAGAAAGCAAGACAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987685 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1011 0 0 0 1 1 Cytosol 1 0 1 1 hm5C_site_1011 DeepMRMD:1;iRNA_m5C:1 1012 chr2 220502432 220502432 1 + C T HNSC 220502432 + 220502412 220502452 41 GCCCCCCCAGCCCGAGGAACCAGCCCAATACGGCACTGCTC GCCCCCCCAGCCCGAGGAACTAGCCCAATACGGCACTGCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220502432 chr2:220502432 stopgain 0.959 1 21 hm5C_associated_SNPs_1012 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1012 DeepMRMD:1;iRNA_m5C:1 1013 chr11 58919321 58919321 1 + C T HNSC 58919321 + 58919301 58919341 41 AATACCCAGGCTCAAAGATTCCATTCACCTAAGAAAAATCC AATACCCAGGCTCAAAGATTTCATTCACCTAAGAAAAATCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM111A ENSG00000166801 CDS Human protein_coding chr11:58919321 chr11:58919321 synonymous SNV . 0 21 hm5C_associated_SNPs_1013 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1013 DeepMRMD:1;iRNA_m5C:1 1014 chr5 40979964 40979964 1 + C T HNSC 40979964 + 40979944 40979984 41 CAGCTGTACTCTGCCTGCCTCAGCTGAGAAAGCTTGTGGTG CAGCTGTACTCTGCCTGCCTTAGCTGAGAAAGCTTGTGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control C7 ENSG00000112936 CDS Human protein_coding chr5:40979964 chr5:40979964 nonsynonymous SNV 0.921 0 21 hm5C_associated_SNPs_1014 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1014 DeepMRMD:1;iRNA_m5C:1 1015 chrX 70776893 70776893 1 + C G HNSC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTATACGGGTGCCATCCAAATTAATCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776893 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_1015 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1015 DeepMRMD:1;iRNA_m5C:1 1016 chr1 200869306 200869306 1 + C T HNSC 200869306 + 200869286 200869326 41 CCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAAACTGGA CCCAAGGTTCGCCGCAGGATTGGAGCGGCTTACAAACTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869306 chr1:200869306 synonymous SNV . 0 21 hm5C_associated_SNPs_1016 0 0 0 0 2 cytosol 1 0 1 1 hm5C_site_1016 DeepMRMD:1;iRNA_m5C:1 1017 chr5 140741612 140741612 1 + C T HNSC 140741612 + 140741592 140741632 41 TGCCTTGGGCGACAGGGACGCGGCCCGCCAGCGCCTGCTGG TGCCTTGGGCGACAGGGACGTGGCCCGCCAGCGCCTGCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741612 chr5:140741612 nonsynonymous SNV 0.961 1 21 hm5C_associated_SNPs_1017 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1017 DeepMRMD:1;iRNA_m5C:1 1018 chr7 23339007 23339007 1 + C T HNSC 23339007 + 23338987 23339027 41 CGTGTGGCGCGGCTGCTCGCCCCACTAATGTGGCGCAGGGC CGTGTGGCGCGGCTGCTCGCTCCACTAATGTGGCGCAGGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALSU1 ENSG00000156928 CDS Human protein_coding chr7:23339007 chr7:23339007 synonymous SNV . 0 21 hm5C_associated_SNPs_1018 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1018 DeepMRMD:1;iRNA_m5C:1 1019 chr17 18220876 18220876 1 + C A HNSC 18220876 + 18220856 18220896 41 TGCTGTATTGGGAAGGAGAGCGATGGTCAGTTGGTGCTGCC TGCTGTATTGGGAAGGAGAGAGATGGTCAGTTGGTGCTGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMCR8 ENSG00000176994 CDS Human protein_coding chr17:18220876 chr17:18220876 nonsynonymous SNV 0.051 1 21 hm5C_associated_SNPs_1019 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_1019 DeepMRMD:1;iRNA_m5C:1 1020 chr15 89843066 89843066 1 + C T HNSC 89843066 + 89843046 89843086 41 ATACACTTCAATTCCTACTTCAGTGGAAGAGTCGGGAAAGA ATACACTTCAATTCCTACTTTAGTGGAAGAGTCGGGAAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89843066 chr15:89843066 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_1020 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1020 DeepMRMD:1;iRNA_m5C:1 1021 chr11 67047163 67047163 1 + C A HNSC 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGGTGCCTCCGGATATCTTCCAGGTGTGTGCCTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047163 nonsynonymous SNV 0.972 1 21 hm5C_associated_SNPs_1021 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1021 DeepMRMD:1;iRNA_m5C:1 1022 chr7 142458409 142458409 1 + C T HNSC 142458409 + 142458389 142458429 41 TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATG TCCCATCTCCACTCCAGTTGTTGCCCCCTTTGATGATGATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458409 chr7:142458409 nonsynonymous SNV 0.112 3 21 hm5C_associated_SNPs_1022 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1022 DeepMRMD:1;iRNA_m5C:1 1023 chr17 59482066 59482066 1 + C T HNSC 59482066 + 59482046 59482086 41 TCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCTC TCGTCGTGCGACCCTCCCCCTGCGCGGGAACCACCCACCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482066 chr17:59482066 synonymous SNV . 0 21 hm5C_associated_SNPs_1023 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1023 DeepMRMD:1;iRNA_m5C:1 1024 chr7 142459768 142459768 1 + C G HNSC 142459768 + 142459748 142459788 41 CATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCC CATGTTAATCAAGCTCTCCTGACGTGCAGTAATCAACGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459768 chr7:142459768 stopgain 0.000 0 21 hm5C_associated_SNPs_1024 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1024 DeepMRMD:1;iRNA_m5C:1 1025 chr4 186231908 186231908 1 + C A HNSC 186231908 + 186231888 186231928 41 GAATCCGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAG GAATCCGAATCCTGGGAGGCACTGCCTATGACCAGCAAGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX25 ENSG00000109762 CDS Human protein_coding chr4:186231908 chr4:186231908 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1025 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1025 DeepMRMD:1;iRNA_m5C:1 1026 chr1 22329569 22329569 1 + C T HNSC 22329569 + 22329549 22329589 41 GAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC GAGGATGCGGTCCCCTACAGTTGGCCCTGGCAGGTAAGAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329569 chr1:22329569 synonymous SNV . 0 21 hm5C_associated_SNPs_1026 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1026 DeepMRMD:1;iRNA_m5C:1 1027 chr7 100478967 100478967 1 + C T HNSC 100478967 + 100478947 100478987 41 ATCGGGACTATGACCGGAATCGGCGAGAGCGCTTCTCGCCA ATCGGGACTATGACCGGAATTGGCGAGAGCGCTTCTCGCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100478967 chr7:100478967 nonsynonymous SNV 0.887 3 21 hm5C_associated_SNPs_1027 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1027 DeepMRMD:1;iRNA_m5C:1 1028 chr6 28333342 28333342 1 + C T HNSC 28333342 + 28333322 28333362 41 GAAGCTGGTGAACAGGAGGGCAGGCTACAAAGAAAGCAGAA GAAGCTGGTGAACAGGAGGGTAGGCTACAAAGAAAGCAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28333342 chr6:28333342 synonymous SNV . 0 21 hm5C_associated_SNPs_1028 0 0 1 0 0 exosome 1 0 1 1 hm5C_site_1028 DeepMRMD:1;iRNA_m5C:1 1029 chr1 22332274 22332274 1 + C T HNSC 22332274 + 22332254 22332294 41 GCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGGTGAG GCATCCACTCTGGAACCGCTTGTGTGTGGCCTGTGGGTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332274 chr1:22332274 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_1029 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1029 DeepMRMD:1;iRNA_m5C:1 1030 chr16 68109341 68109341 1 + C T HNSC 68109341 + 68109321 68109361 41 CAGGCTCTCAGCCAAGACTTCAGAGCAGACAGGGGAGCCAG CAGGCTCTCAGCCAAGACTTTAGAGCAGACAGGGGAGCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68109341 chr16:68109341 nonsynonymous SNV 0.057 0 21 hm5C_associated_SNPs_1030 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_1030 DeepMRMD:1;iRNA_m5C:1 1031 chr9 139734271 139734271 1 + C T HNSC 139734271 + 139734251 139734291 41 AAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAGGAGGC AAGAATGACTCGGACCTCTTTGGGCTGGGGCTGGAGGAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734271 chr9:139734271 synonymous SNV . 0 21 hm5C_associated_SNPs_1031 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1031 DeepMRMD:1;iRNA_m5C:1 1032 chr10 79797023 79797023 1 + C T HNSC 79797023 + 79797003 79797043 41 AAGAACAGAATGAAGAAAGTCAGGGGGACTGCAAAGGCCAA AAGAACAGAATGAAGAAAGTTAGGGGGACTGCAAAGGCCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797023 chr10:79797023 synonymous SNV . 0 21 hm5C_associated_SNPs_1032 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1032 DeepMRMD:1;iRNA_m5C:1 1033 chr15 85164140 85164140 1 + C T HNSC 85164140 + 85164120 85164160 41 AGCCGGAAATCCCACCTCATCACACACGAGAGGACCCACAC AGCCGGAAATCCCACCTCATTACACACGAGAGGACCCACAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSCAN2 ENSG00000176371 CDS Human protein_coding chr15:85164140 chr15:85164140 synonymous SNV . 0 21 hm5C_associated_SNPs_1033 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1033 DeepMRMD:1;iRNA_m5C:1 1034 chr1 213414710 213414710 1 + C G HNSC 213414710 + 213414690 213414730 41 TAAAATCAGAACCTTTGAAACCATTCTTTACTCTTCCAGAT TAAAATCAGAACCTTTGAAAGCATTCTTTACTCTTCCAGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213414710 chr1:213414710 nonsynonymous SNV 0.968 0 21 hm5C_associated_SNPs_1034 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1034 DeepMRMD:1;iRNA_m5C:1 1035 chr2 173429352 173429352 1 + C G HNSC 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTCACCAGCCAGAATGTTGAGTACTTTTTGGATCGATTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429352 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1035 0 0 0 1 1 Ribosome 1 0 1 1 hm5C_site_1035 DeepMRMD:1;iRNA_m5C:1 1036 chr7 21631019 21631019 1 + C A HNSC 21631019 + 21630999 21631039 41 AGCACAGAGTTGAGCGCACACAGAAAAACGTGAAGGTGATC AGCACAGAGTTGAGCGCACAAAGAAAAACGTGAAGGTGATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21631019 chr7:21631019 nonsynonymous SNV 0.008 1 21 hm5C_associated_SNPs_1036 0 0 0 0 0 nucleolus 1 0 1 1 hm5C_site_1036 DeepMRMD:1;iRNA_m5C:1 1037 chr3 49011181 49011181 1 + C T HNSC 49011181 + 49011161 49011201 41 CCACAGACTGTGCCACAATCCGGAAATGGCTCACGAAGTGT CCACAGACTGTGCCACAATCTGGAAATGGCTCACGAAGTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49011181 chr3:49011181 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1037 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1037 DeepMRMD:1;iRNA_m5C:1 1038 chr19 38871607 38871607 1 + C T HNSC 38871607 + 38871587 38871627 41 ATCCCCGCCGAGAGCTACACCTTCTTCATTGACATCCTGCT ATCCCCGCCGAGAGCTACACTTTCTTCATTGACATCCTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38871607 chr19:38871607 synonymous SNV . 0 21 hm5C_associated_SNPs_1038 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1038 DeepMRMD:1;iRNA_m5C:1 1039 chr17 55194253 55194253 1 + C A HNSC 55194253 + 55194233 55194273 41 CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG CACCCTGCCGTTTCAGGGAGAAGAAGTCCTTCTGGACAGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194253 chr17:55194253 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1039 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1039 DeepMRMD:1;iRNA_m5C:1 1040 chr1 22332001 22332001 1 + C T HNSC 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG GTGTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22332001 nonsynonymous SNV 0.031 1 21 hm5C_associated_SNPs_1040 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1040 DeepMRMD:1;iRNA_m5C:1 1041 chr6 90331647 90331647 1 + C T HNSC 90331647 + 90331627 90331667 41 TTTGCCTCCTTCAGGTCTTGCGCTTCAGTCGTGGGCGAAGC TTTGCCTCCTTCAGGTCTTGTGCTTCAGTCGTGGGCGAAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKRD6 ENSG00000083099;ENSG00000135299 CDS Human other chr6:90331647 chr6:90331647 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1041 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_1041 DeepMRMD:1;iRNA_m5C:1 1042 chr19 50335577 50335577 1 + C T HNSC 50335577 + 50335557 50335597 41 TCCCGCAGACCACCCTGGGCCCTTTGTTCCGGAACTCAAGG TCCCGCAGACCACCCTGGGCTCTTTGTTCCGGAACTCAAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50335577 chr19:50335577 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1042 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1042 DeepMRMD:1;iRNA_m5C:1 1043 chr4 128811293 128811293 1 + C T HNSC 128811293 + 128811273 128811313 41 GCAAGACTAGGGGTATGGAGCCACCATGGGGTTATCAGAAT GCAAGACTAGGGGTATGGAGTCACCATGGGGTTATCAGAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK4 ENSG00000142731 CDS Human protein_coding chr4:128811293 chr4:128811293 nonsynonymous SNV 0.397 0 21 hm5C_associated_SNPs_1043 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1043 DeepMRMD:1;iRNA_m5C:1 1044 chr10 73767938 73767938 1 + C T KICH 73767938 + 73767918 73767958 41 GGGCCGCTGCAGAAGGCCCGCGAGATGTACCGCTTCGCCGG GGGCCGCTGCAGAAGGCCCGTGAGATGTACCGCTTCGCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CHST3 ENSG00000122863 CDS Human protein_coding chr10:73767938 chr10:73767938 synonymous SNV . 0 21 hm5C_associated_SNPs_1044 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_1044 DeepMRMD:1;iRNA_m5C:1 1045 chr7 142458497 142458497 1 + C A KIRC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGATACCACTTCTGTGGTGGCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458497 synonymous SNV . 0 21 hm5C_associated_SNPs_1045 0 0 0 0 3 Cytosol 1 0 1 1 hm5C_site_1045 DeepMRMD:1;iRNA_m5C:1 1046 chr17 66251944 66251944 1 + C A KIRC 66251944 + 66251924 66251964 41 GGAAGAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT GGAAGAAGCTGACCGGCGCCATCTAAACCTTTGCCCTATCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control AMZ2 ENSG00000196704 CDS Human protein_coding chr17:66251944 chr17:66251944 nonsynonymous SNV 0.956 3 21 hm5C_associated_SNPs_1046 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1046 DeepMRMD:1;iRNA_m5C:1 1047 chr2 27459284 27459284 1 + C T KIRC 27459284 + 27459264 27459304 41 CAATGCGTGGAGCTGGGGGCCGGCGTCTCTCTTCCTTTGTC CAATGCGTGGAGCTGGGGGCTGGCGTCTCTCTTCCTTTGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27459284 chr2:27459284 nonsynonymous SNV 0.993 5 21 hm5C_associated_SNPs_1047 0 0 1 0 0 Exosome 1 0 1 1 hm5C_site_1047 DeepMRMD:1;iRNA_m5C:1 1048 chr2 238005475 238005475 1 + C T KIRC 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCAGGGGCTCTGGATGTTTCCTTTAACAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005475 synonymous SNV . 0 21 hm5C_associated_SNPs_1048 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1048 DeepMRMD:1;iRNA_m5C:1 1049 chr15 64448267 64448267 1 + G A KIRC 64448267 - 64448247 64448287 41 GATGTGATCATCGCAGACTGCGGCAAGATCGAGGTGGAGAA GATGTGATCATCGCAGACTGTGGCAAGATCGAGGTGGAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448267 chr15:64448267 synonymous SNV . 0 21 hm5C_associated_SNPs_1049 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1049 DeepMRMD:1;iRNA_m5C:1 1050 chr7 142459716 142459716 1 + C A KIRC 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATCCGCCACCCCAAATACGACAGGAAGACTCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459716 nonsynonymous SNV 0.007 0 21 hm5C_associated_SNPs_1050 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1050 DeepMRMD:1;iRNA_m5C:1 1051 chr17 37360793 37360793 1 + C T KIRC 37360793 + 37360773 37360813 41 ACCAGTGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGA ACCAGTGACCAGGCTGAGGCTCGCAGGTCTAAGACCAAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360793 chr17:37360793 synonymous SNV . 0 21 hm5C_associated_SNPs_1051 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1051 DeepMRMD:1;iRNA_m5C:1 1052 chr17 37360846 37360846 1 + C T KIRC 37360846 + 37360826 37360866 41 CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCA CCGTGAAGAGCGCCTCCAGGTCAAGAAGGAGGAGATCATCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360846 chr17:37360846 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1052 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1052 DeepMRMD:1;iRNA_m5C:1 1053 chr7 130021569 130021569 1 + C T KIRC 130021569 + 130021549 130021589 41 AAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCAT AAGATCTTTCTGGAGTCCCATGGCATCAGCTATGAGACCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021569 chr7:130021569 synonymous SNV . 0 21 hm5C_associated_SNPs_1053 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1053 DeepMRMD:1;iRNA_m5C:1 1054 chrX 41088595 41088595 1 + C A KIRC 41088595 + 41088575 41088615 41 GAATCACTATCAAAAAAGAGCATACCAGTGTATAAAATGTA GAATCACTATCAAAAAAGAGAATACCAGTGTATAAAATGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41088595 chrX:41088595 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1054 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1054 DeepMRMD:1;iRNA_m5C:1 1055 chr7 142458551 142458551 1 + C T KIRC 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGTGGGTGGTATCAGCAGGTCACTGCTACAAGTCGTAAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458551 synonymous SNV . 0 21 hm5C_associated_SNPs_1055 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1055 DeepMRMD:1;iRNA_m5C:1 1056 chr20 55049773 55049773 1 + C A KIRC 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT GTCATTGAATTTCTCTTGGAAAAATCTGCAGAAAAGGCTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049773 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1056 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1056 DeepMRMD:1;iRNA_m5C:1 1057 chr7 103008447 103008447 1 + C T KIRC 103008447 + 103008427 103008467 41 TTGGAAGCTGTAAATAAGGTCATTAAGTCTTATGCCAAATT TTGGAAGCTGTAAATAAGGTTATTAAGTCTTATGCCAAATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103008447 chr7:103008447 synonymous SNV . 0 21 hm5C_associated_SNPs_1057 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1057 DeepMRMD:1;iRNA_m5C:1 1058 chr9 135946953 135946953 1 + C G KIRC 135946953 + 135946933 135946973 41 CCGCCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCAC CCGCCCACGGGTGACTCCGGGGCCCCCCCCGTGCCGCCCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946953 chr9:135946953 synonymous SNV . 0 21 hm5C_associated_SNPs_1058 1 0 0 0 0 exosome 1 0 1 1 hm5C_site_1058 DeepMRMD:1;iRNA_m5C:1 not specified not specified 1059 chr6 30692126 30692126 1 + C A KIRC 30692126 + 30692106 30692146 41 CAGCAGTACCAGGATGCCACCGCAGAAGAGGAGGAGGATTT CAGCAGTACCAGGATGCCACAGCAGAAGAGGAGGAGGATTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TUBB ENSG00000196230 CDS Human protein_coding chr6:30692126 chr6:30692126 synonymous SNV . 0 21 hm5C_associated_SNPs_1059 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1059 DeepMRMD:1;iRNA_m5C:1 1060 chr4 178262698 178262698 1 + C T KIRC 178262698 + 178262678 178262718 41 CGTCCTAATTGTGGTCAGTGCCACTGCAGAATAACTGTGTG CGTCCTAATTGTGGTCAGTGTCACTGCAGAATAACTGTGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262698 chr4:178262698 synonymous SNV . 0 21 hm5C_associated_SNPs_1060 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1060 DeepMRMD:1;iRNA_m5C:1 1061 chr17 37358657 37358657 1 + C T KIRP 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTCGATGCCGGAAAAACATCTTGGCCCGCCGGAAGGGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358657 nonsynonymous SNV 0.995 1 21 hm5C_associated_SNPs_1061 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1061 DeepMRMD:1;iRNA_m5C:1 1062 chr8 61775123 61775123 1 + C T KIRP 61775123 + 61775103 61775143 41 CCAGATGGGTGGAGCTATGGCGCCTCCAATGAAGGATCTAC CCAGATGGGTGGAGCTATGGTGCCTCCAATGAAGGATCTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD7 ENSG00000171316 CDS Human protein_coding chr8:61775123 chr8:61775123 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_1062 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1062 DeepMRMD:1;iRNA_m5C:1 1063 chr7 128407599 128407599 1 + C A KIRP 128407599 + 128407579 128407619 41 TTGAGTTTCGGGATAAGAACCGTGATGGGAAGATGGACAAG TTGAGTTTCGGGATAAGAACAGTGATGGGAAGATGGACAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALU ENSG00000128595 CDS Human protein_coding chr7:128407599 chr7:128407599 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_1063 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1063 DeepMRMD:1;iRNA_m5C:1 1064 chr18 7955215 7955215 1 + C T LGG 7955215 + 7955195 7955235 41 CTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGG CTCCATCAATGGGGATGGGCTCATTGTGGCCCGAGAGGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955215 chr18:7955215 nonsynonymous SNV 0.953 4 21 hm5C_associated_SNPs_1064 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1064 DeepMRMD:1;iRNA_m5C:1 1065 chr2 207175003 207175003 1 + C T LGG 207175003 + 207174983 207175023 41 GTGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGA GTGGCCTTAGATAAACCATGTCATCGTCATCCTCCAGCAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207175003 chr2:207175003 synonymous SNV . 0 21 hm5C_associated_SNPs_1065 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1065 DeepMRMD:1;iRNA_m5C:1 1066 chr12 93881384 93881384 1 + C A LGG 93881384 + 93881364 93881404 41 AGGAAGGACCTATGATAGAACAACTTAGCAAAATGTTCTTT AGGAAGGACCTATGATAGAAAAACTTAGCAAAATGTTCTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL42 ENSG00000198015 CDS Human protein_coding chr12:93881384 chr12:93881384 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_1066 0 0 1 1 1 Cytosol 1 0 1 1 hm5C_site_1066 DeepMRMD:1;iRNA_m5C:1 1067 chr8 28906544 28906544 1 + C T LGG 28906544 + 28906524 28906564 41 TCAAACAGTGATGATGTCGACGGGAATGACTACTCTGAGCA TCAAACAGTGATGATGTCGATGGGAATGACTACTCTGAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906544 chr8:28906544 synonymous SNV . 0 21 hm5C_associated_SNPs_1067 0 0 1 0 4 Nucleus 1 0 1 1 hm5C_site_1067 DeepMRMD:1;iRNA_m5C:1 1068 chr2 220473305 220473305 1 + C T LGG 220473305 + 220473285 220473325 41 TTCTCTTGGTCTCTCCACAGCGGAACTCTGTCGCCCCTTGT TTCTCTTGGTCTCTCCACAGTGGAACTCTGTCGCCCCTTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STK11IP ENSG00000144589 CDS Human protein_coding chr2:220473305 chr2:220473305 nonsynonymous SNV 0.961 0 21 hm5C_associated_SNPs_1068 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1068 DeepMRMD:1;iRNA_m5C:1 1069 chr13 77570092 77570092 1 + C T LGG 77570092 + 77570072 77570112 41 ATTAACTGGCAAGAACTACACAATGGAATGGTATGAACTTT ATTAACTGGCAAGAACTACATAATGGAATGGTATGAACTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570092 chr13:77570092 nonsynonymous SNV 0.967 5 21 hm5C_associated_SNPs_1069 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1069 DeepMRMD:1;iRNA_m5C:1 1070 chrX 12838861 12838861 1 + C T LGG 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCGCCTTTGAGGTTGTTGTCGTCACAAACACAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838861 nonsynonymous SNV 0.905 1 21 hm5C_associated_SNPs_1070 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1070 DeepMRMD:1;iRNA_m5C:1 1071 chr15 40509802 40509802 1 + C T LGG 40509802 + 40509782 40509822 41 CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT CTGGATGTTTTTACCCTCAGTGGCTTTCGGACTGTACAGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509802 chr15:40509802 synonymous SNV . 0 21 hm5C_associated_SNPs_1071 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1071 DeepMRMD:1;iRNA_m5C:1 1072 chr5 908507 908507 1 + C T LGG 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCCCGAAATGCCTGCAGGGTGGGCACCGAGCCATCAGATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908507 nonsynonymous SNV 0.346 5 21 hm5C_associated_SNPs_1072 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_1072 DeepMRMD:1;iRNA_m5C:1 1073 chr19 17424890 17424890 1 + C T LGG 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCGATTTCACGTGGACTCCGTGTGCAAAGCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424890 nonsynonymous SNV 0.431 1 21 hm5C_associated_SNPs_1073 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1073 DeepMRMD:1;iRNA_m5C:1 1074 chr19 18679431 18679431 1 + C T LGG 18679431 + 18679411 18679451 41 GACAGATGACGAGGAGATGACGGGCGAATAGCCCTGCTGCC GACAGATGACGAGGAGATGATGGGCGAATAGCCCTGCTGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KXD1 ENSG00000105700 CDS Human protein_coding chr19:18679431 chr19:18679431 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_1074 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1074 DeepMRMD:1;iRNA_m5C:1 1075 chr7 101891755 101891755 1 + C T LGG 101891755 + 101891735 101891775 41 GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGC GGGAGTCAGGGCCAGGCGGGTGCCAGCGACTCACCCTCGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891755 chr7:101891755 synonymous SNV . 0 21 hm5C_associated_SNPs_1075 0 0 1 0 1 Exosome 1 0 1 1 hm5C_site_1075 DeepMRMD:1;iRNA_m5C:1 1076 chr6 138576703 138576703 1 + C A LGG 138576703 + 138576683 138576723 41 CGTCTCCGGGAGTGTCTGACCACGGCCGAGGATCAGGCTGC CGTCTCCGGGAGTGTCTGACAACGGCCGAGGATCAGGCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 CDS Human protein_coding chr6:138576703 chr6:138576703 nonsynonymous SNV 0.358 1 21 hm5C_associated_SNPs_1076 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1076 DeepMRMD:1;iRNA_m5C:1 1077 chr1 230822730 230822730 1 + C A LGG 230822730 + 230822710 230822750 41 TCCCAAGGAGATCAAGAAACCTTTGGTAACTGGTAGCAAAG TCCCAAGGAGATCAAGAAACATTTGGTAACTGGTAGCAAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COG2 ENSG00000135775 CDS Human protein_coding chr1:230822730 chr1:230822730 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_1077 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1077 DeepMRMD:1;iRNA_m5C:1 1078 chr1 27269155 27269155 1 + C T LGG 27269155 + 27269135 27269175 41 CCCTGATTGTAAGCAGGATACTGAGGAAGATGAGGAGGAAG CCCTGATTGTAAGCAGGATATTGAGGAAGATGAGGAGGAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUDC ENSG00000090273 CDS Human protein_coding chr1:27269155 chr1:27269155 nonsynonymous SNV 0.409 1 21 hm5C_associated_SNPs_1078 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1078 DeepMRMD:1;iRNA_m5C:1 1079 chr11 74329667 74329667 1 + C A LGG 74329667 + 74329647 74329687 41 AAAAGTTTGAGCAGTCACATCTTCACATGTCAAGTGAGACA AAAAGTTTGAGCAGTCACATATTCACATGTCAAGTGAGACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329667 chr11:74329667 nonsynonymous SNV 0.846 0 21 hm5C_associated_SNPs_1079 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1079 DeepMRMD:1;iRNA_m5C:1 1080 chr11 380183 380183 1 + C T LGG 380183 + 380163 380203 41 GCGCTCCGCCGGGCTGCAGGCGGGAGTGGACGCGGTAGAGG GCGCTCCGCCGGGCTGCAGGTGGGAGTGGACGCGGTAGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:380183 chr11:380183 nonsynonymous SNV 0.468 0 21 hm5C_associated_SNPs_1080 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1080 DeepMRMD:1;iRNA_m5C:1 1081 chrX 149905115 149905115 1 + C T LGG 149905115 + 149905095 149905135 41 GTGCTTACCCAAATGCAGAACTTGTGTTCTTGGAGATCCAC GTGCTTACCCAAATGCAGAATTTGTGTTCTTGGAGATCCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905115 chrX:149905115 nonsynonymous SNV 0.361 3 21 hm5C_associated_SNPs_1081 0 0 1 1 1 Ribosome 1 0 1 1 hm5C_site_1081 DeepMRMD:1;iRNA_m5C:1 1082 chr17 27075049 27075049 1 + C A LGG 27075049 + 27075029 27075069 41 CACCAGGGCCACCTGAATACCTGCAGCTTCAATGTCATTCC CACCAGGGCCACCTGAATACATGCAGCTTCAATGTCATTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27075049 chr17:27075049 synonymous SNV . 0 21 hm5C_associated_SNPs_1082 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1082 DeepMRMD:1;iRNA_m5C:1 1083 chr19 13054427 13054427 1 + C T LGG 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGCAACGAGATGTGGGGCGTAACAAAGGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054427 nonsynonymous SNV 0.964 2 21 hm5C_associated_SNPs_1083 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1083 DeepMRMD:1;iRNA_m5C:1 1084 chr9 135929296 135929296 1 + C T LGG 135929296 + 135929276 135929316 41 ATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCCGTTGT ATGCCAAGATTTATCAAGTCTTCGATTTCCGAATCCGTTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929296 chr9:135929296 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1084 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1084 DeepMRMD:1;iRNA_m5C:1 1085 chr13 76395515 76395515 1 + C T LGG 76395515 + 76395495 76395535 41 CTTTTGCAAAAAGAGAGGACCGTGTAACAACTGAAATTCAG CTTTTGCAAAAAGAGAGGACTGTGTAACAACTGAAATTCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76395515 chr13:76395515 nonsynonymous SNV 0.013 1 21 hm5C_associated_SNPs_1085 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1085 DeepMRMD:1;iRNA_m5C:1 1086 chr2 233681620 233681620 1 + C T LGG 233681620 + 233681600 233681640 41 AGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGCGAAAG AGGCAGAAATGAGGGCAAAATGGGAAGAGGAAGAGCGAAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681620 chr2:233681620 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_1086 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1086 DeepMRMD:1;iRNA_m5C:1 1087 chr12 123286229 123286229 1 + C A LGG 123286229 + 123286209 123286249 41 GGCGAAAGTGGCATGTGTGACTCCAAGTGCTGCCACCCGAG GGCGAAAGTGGCATGTGTGAATCCAAGTGCTGCCACCCGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CCDC62 ENSG00000130783 CDS Human protein_coding chr12:123286229 chr12:123286229 nonsynonymous SNV 0.045 0 21 hm5C_associated_SNPs_1087 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_1087 DeepMRMD:1;iRNA_m5C:1 1088 chr1 36354031 36354031 1 + C T LGG 36354031 + 36354011 36354051 41 GCCTCTTTGTCTTGTAGCTGCGGGCGCTTACCTGCCCCCCC GCCTCTTTGTCTTGTAGCTGTGGGCGCTTACCTGCCCCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO1 ENSG00000092847 CDS Human protein_coding chr1:36354031 chr1:36354031 nonsynonymous SNV 0.973 0 21 hm5C_associated_SNPs_1088 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1088 DeepMRMD:1;iRNA_m5C:1 1089 chr21 44189185 44189185 1 + C T LGG 44189185 + 44189165 44189205 41 CTGTGGCACCGTTCATGGACCGAGACAAAGTGACCAAGGCC CTGTGGCACCGTTCATGGACTGAGACAAAGTGACCAAGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE9A ENSG00000160191 CDS Human protein_coding chr21:44189185 chr21:44189185 stopgain 1.000 1 21 hm5C_associated_SNPs_1089 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_1089 DeepMRMD:1;iRNA_m5C:1 1090 chr18 13056654 13056654 1 + C T LIHC 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTCTGTTGGTACAAATTGTGGAATTGAACCATGGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056654 synonymous SNV . 0 21 hm5C_associated_SNPs_1090 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1090 DeepMRMD:1;iRNA_m5C:1 1091 chr12 132546658 132546658 1 + C A LIHC 132546658 + 132546638 132546678 41 CTGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCCGCC CTGTTTGCCTTTTCTAGACGACGGGAGGCTCTGCTCCCGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546658 chr12:132546658 nonsynonymous SNV 0.235 2 21 hm5C_associated_SNPs_1091 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1091 DeepMRMD:1;iRNA_m5C:1 1092 chr7 149422538 149422538 1 + C A LIHC 149422538 + 149422518 149422558 41 CCAGCCAGGAGACTCTAGGTCTCAGAAGCCTGAACTGCAAC CCAGCCAGGAGACTCTAGGTATCAGAAGCCTGAACTGCAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149422538 chr7:149422538 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_1092 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1092 DeepMRMD:1;iRNA_m5C:1 1093 chr1 26142138 26142138 1 + C A LIHC 26142138 + 26142118 26142158 41 TCTCATCCACCTTTGAAGACCCGTCCACGGCCACCTACATG TCTCATCCACCTTTGAAGACACGTCCACGGCCACCTACATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26142138 chr1:26142138 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_1093 0 0 1 0 1 unknown 1 0 1 1 hm5C_site_1093 DeepMRMD:1;iRNA_m5C:1 1094 chr4 88767517 88767517 1 + C T LIHC 88767517 + 88767497 88767537 41 GGTAGACAACCCCATTCCAACAGGAGGTTTAGTTCCCGTAG GGTAGACAACCCCATTCCAATAGGAGGTTTAGTTCCCGTAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MEPE ENSG00000152595 CDS Human protein_coding chr4:88767517 chr4:88767517 synonymous SNV . 0 21 hm5C_associated_SNPs_1094 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1094 DeepMRMD:1;iRNA_m5C:1 1095 chr20 18462420 18462420 1 + C T LIHC 18462420 + 18462400 18462440 41 CAATCCAATCATCCCTCCCACAGGTTTGGTCCGGGCACCCT CAATCCAATCATCCCTCCCATAGGTTTGGTCCGGGCACCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462420 chr20:18462420 nonsynonymous SNV 0.687 2 21 hm5C_associated_SNPs_1095 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1095 DeepMRMD:1;iRNA_m5C:1 1096 chr3 4856235 4856235 1 + C A LIHC 4856235 + 4856215 4856255 41 TAGGAGATGTACTCAGGAAGCCGTCCAAAGAGGTAAATTAA TAGGAGATGTACTCAGGAAGACGTCCAAAGAGGTAAATTAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4856235 chr3:4856235 nonsynonymous SNV 0.988 5 21 hm5C_associated_SNPs_1096 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1096 DeepMRMD:1;iRNA_m5C:1 1097 chr3 184037534 184037534 1 + C G LIHC 184037534 + 184037514 184037554 41 TCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACCAGC TCCCACTGGCGTGGCCCCCAGCCCAGTTTTGATGAACCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037534 chr3:184037534 nonsynonymous SNV 0.972 0 21 hm5C_associated_SNPs_1097 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1097 DeepMRMD:1;iRNA_m5C:1 1098 chr11 67786067 67786067 1 + C T LIHC 67786067 + 67786047 67786087 41 CACCCTGGCCCTCAGGAACTCCGGGCCTGGATGAAGGACGA CACCCTGGCCCTCAGGAACTTCGGGCCTGGATGAAGGACGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH3B1 ENSG00000006534 splicing Human protein_coding chr11:67786067 chr11:67786067 . . 0 21 hm5C_associated_SNPs_1098 0 0 0 0 3 Ribosome 1 0 1 1 hm5C_site_1098 DeepMRMD:1;iRNA_m5C:1 1099 chr5 140347691 140347691 1 + C A LIHC 140347691 + 140347671 140347711 41 AGCCACAGATGGGGGAATACCGCAGCTCACATCCCTGCGTA AGCCACAGATGGGGGAATACAGCAGCTCACATCCCTGCGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCDHAC2 ENSG00000243232 CDS Human protein_coding chr5:140347691 chr5:140347691 nonsynonymous SNV 0.977 4 21 hm5C_associated_SNPs_1099 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1099 DeepMRMD:1;iRNA_m5C:1 1100 chr5 223682 223682 1 + C T LIHC 223682 + 223662 223702 41 ATCTGCTAAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGT ATCTGCTAAAGTTTCAGATTTCGTAAGTTCATGCTTTTTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:223682 chr5:223682 nonsynonymous SNV 0.923 0 21 hm5C_associated_SNPs_1100 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1100 DeepMRMD:1;iRNA_m5C:1 1101 chr1 94972193 94972193 1 + C A LIHC 94972193 + 94972173 94972213 41 GCTACATTTATAGTCATTGTCGAAAGGTAAGTACGCAGGTG GCTACATTTATAGTCATTGTAGAAAGGTAAGTACGCAGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94972193 chr1:94972193 synonymous SNV . 0 21 hm5C_associated_SNPs_1101 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1101 DeepMRMD:1;iRNA_m5C:1 1102 chr5 179263583 179263583 1 + C A LIHC 179263583 + 179263563 179263603 41 CCAGTATTCAAAGCATCCCCCGCCGTTGTGACCACTTTTGC CCAGTATTCAAAGCATCCCCAGCCGTTGTGACCACTTTTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SQSTM1 ENSG00000161011 CDS Human protein_coding chr5:179263583 chr5:179263583 nonsynonymous SNV 0.007 4 21 hm5C_associated_SNPs_1102 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1102 DeepMRMD:1;iRNA_m5C:1 1103 chr7 100454688 100454688 1 + C T LIHC 100454688 + 100454668 100454708 41 CAGTTTTGTGGCTGTGGGGCCGAGGGACATCCGCTTGACTC CAGTTTTGTGGCTGTGGGGCTGAGGGACATCCGCTTGACTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC12A9 ENSG00000146828 CDS Human protein_coding chr7:100454688 chr7:100454688 nonsynonymous SNV 0.482 3 21 hm5C_associated_SNPs_1103 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1103 DeepMRMD:1;iRNA_m5C:1 1104 chr9 98678714 98678714 1 + C A LIHC 98678714 + 98678694 98678734 41 AGTTGCCTAAGAAGGAAGACCGGGTAAGAACCGCATTTGTA AGTTGCCTAAGAAGGAAGACAGGGTAAGAACCGCATTTGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98678714 chr9:98678714 synonymous SNV . 0 21 hm5C_associated_SNPs_1104 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1104 DeepMRMD:1;iRNA_m5C:1 1105 chr13 28752020 28752020 1 + C A LIHC 28752020 + 28752000 28752040 41 AGATCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACT AGATCCTCTAACATCACCTGATTCATCCTTGTTTAATGACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752020 chr13:28752020 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1105 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1105 DeepMRMD:1;iRNA_m5C:1 1106 chr7 142460286 142460286 1 + C T LIHC 142460286 + 142460266 142460306 41 TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTG TTCCTGATCCTCACAGCCGATTACCCAGACGAGCTGCAGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460286 chr7:142460286 synonymous SNV . 0 21 hm5C_associated_SNPs_1106 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1106 DeepMRMD:1;iRNA_m5C:1 1107 chr7 12269401 12269401 1 + C T LIHC 12269401 + 12269381 12269421 41 AAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATT AAACAGTTATTGGAAAGGCATGCTTAAACAACATAACCATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM106B ENSG00000106460 CDS Human protein_coding chr7:12269401 chr7:12269401 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_1107 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1107 DeepMRMD:1;iRNA_m5C:1 1108 chr7 142459706 142459706 1 + C G LUAD 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATGCGCCACCCCCAATACGACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459706 nonsynonymous SNV 0.013 5 21 hm5C_associated_SNPs_1108 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1108 DeepMRMD:1;iRNA_m5C:1 1109 chr17 38991250 38991250 1 + C G LUAD 38991250 + 38991230 38991270 41 CTCAGCTCAGCAATCTCATGCCGGTTGGCAATTGTCAGCAG CTCAGCTCAGCAATCTCATGGCGGTTGGCAATTGTCAGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM99 ENSG00000167920 CDS Human protein_coding chr17:38991250 chr17:38991250 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_1109 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_1109 DeepMRMD:1;iRNA_m5C:1 1110 chr20 49458380 49458380 1 + C T LUAD 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCGGGACCATGGGGCTTTCCCTCAGGCCCTGCGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458380 synonymous SNV . 0 21 hm5C_associated_SNPs_1110 0 0 1 0 2 exosome 1 0 1 1 hm5C_site_1110 DeepMRMD:1;iRNA_m5C:1 1111 chr19 55993190 55993190 1 + C T LUAD 55993190 + 55993170 55993210 41 TTCCGCTGCCCGCTCTGCCCCAAGACCTTCACCCACTCCTC TTCCGCTGCCCGCTCTGCCCTAAGACCTTCACCCACTCCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZNF628 ENSG00000197483 CDS Human protein_coding chr19:55993190 chr19:55993190 synonymous SNV . 0 21 hm5C_associated_SNPs_1111 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1111 DeepMRMD:1;iRNA_m5C:1 1112 chr6 31713049 31713049 1 + C T LUAD 31713049 + 31713029 31713069 41 TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGCCAGTG TAAGAGTGAGTCTCACCCCTTAGTGTACAAAGTGGCCAGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31713049 chr6:31713049 nonsynonymous SNV 0.976 4 21 hm5C_associated_SNPs_1112 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1112 DeepMRMD:1;iRNA_m5C:1 1113 chr17 4905834 4905834 1 + C T LUAD 4905834 + 4905814 4905854 41 GTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGGC GTCGGGGTTCTCTGCGGGTCTGGGAGCACCCCATCCTGGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905834 chr17:4905834 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1113 1 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1113 DeepMRMD:1;iRNA_m5C:1 Ataxia, spastic, 2, autosomal recessive Ataxia, spastic, 2, autosomal recessive 1114 chr2 233671355 233671355 1 + C T LUAD 233671355 + 233671335 233671375 41 TTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTAC TTTTCTCCAGGTCCAGCTCCTCCTCCTCATATGGTAAGTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671355 chr2:233671355 synonymous SNV . 0 21 hm5C_associated_SNPs_1114 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1114 DeepMRMD:1;iRNA_m5C:1 1115 chr10 112361869 112361869 1 + C T LUAD 112361869 + 112361849 112361889 41 GTTAGATAGGGGTTACAAATCAATCATGGAACTGATGAATG GTTAGATAGGGGTTACAAATTAATCATGGAACTGATGAATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112361869 chr10:112361869 nonsynonymous SNV 0.839 3 21 hm5C_associated_SNPs_1115 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1115 DeepMRMD:1;iRNA_m5C:1 1116 chr11 73078683 73078683 1 + C T LUAD 73078683 + 73078663 73078703 41 CTCCCCTTGGCACCGAGGCCCCGCCCCTGCCAGGCCTAAAA CTCCCCTTGGCACCGAGGCCTCGCCCCTGCCAGGCCTAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73078683 chr11:73078683 nonsynonymous SNV 0.016 0 21 hm5C_associated_SNPs_1116 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1116 DeepMRMD:1;iRNA_m5C:1 1117 chr9 135947049 135947049 1 + C A LUAD 135947049 + 135947029 135947069 41 GTGCCGCCCACGGGTGACTCCGGGGCCCCCCCTGTGCCCCC GTGCCGCCCACGGGTGACTCAGGGGCCCCCCCTGTGCCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947049 chr9:135947049 synonymous SNV . 0 21 hm5C_associated_SNPs_1117 0 0 1 0 0 exosome 1 0 1 1 hm5C_site_1117 DeepMRMD:1;iRNA_m5C:1 1118 chr7 142459757 142459757 1 + C T LUAD 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATGACATCATGTTAATTAAGCTCTCCTCACGTGCAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459757 synonymous SNV . 0 21 hm5C_associated_SNPs_1118 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1118 DeepMRMD:1;iRNA_m5C:1 1119 chr7 142459819 142459819 1 + C A LUAD 142459819 + 142459799 142459839 41 CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT CATCTCTCTGCCCACCGCCCATCCAGCCACTGGCACGAAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459819 chr7:142459819 nonsynonymous SNV 0.000 3 21 hm5C_associated_SNPs_1119 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1119 DeepMRMD:1;iRNA_m5C:1 1120 chr7 130021012 130021012 1 + C T LUAD 130021012 + 130020992 130021032 41 AGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGG AGGAGCTGGAGGACCTGGAGTACCTGCAGGTCAGAAGAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021012 chr7:130021012 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_1120 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1120 DeepMRMD:1;iRNA_m5C:1 1121 chr3 184082795 184082795 1 + C G LUAD 184082795 + 184082775 184082815 41 GTGAATCTTTCAAGATGGATCTAATCTTAGATGTAAACATT GTGAATCTTTCAAGATGGATGTAATCTTAGATGTAAACATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2H ENSG00000163882 CDS Human protein_coding chr3:184082795 chr3:184082795 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_1121 0 0 1 1 1 Ribosome 1 0 1 1 hm5C_site_1121 DeepMRMD:1;iRNA_m5C:1 1122 chr7 142460411 142460411 1 + C T LUAD 142460411 + 142460391 142460431 41 CCTTGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA CCTTGAGGGAGGCAAGGATTTATGTCAGGTGATTTGACCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460411 chr7:142460411 nonsynonymous SNV 0.962 3 21 hm5C_associated_SNPs_1122 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1122 DeepMRMD:1;iRNA_m5C:1 1123 chr7 142460317 142460317 1 + C T LUAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTTCTGTGCTGAGCCAGGCTAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460317 nonsynonymous SNV 0.003 2 21 hm5C_associated_SNPs_1123 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1123 DeepMRMD:1;iRNA_m5C:1 1124 chr4 128816214 128816214 1 + C G LUAD 128816214 + 128816194 128816234 41 ATCAGCACAACTTTTGAAATCTGTTTTTGTGAAAAATGTTG ATCAGCACAACTTTTGAAATGTGTTTTTGTGAAAAATGTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK4 ENSG00000142731 CDS Human protein_coding chr4:128816214 chr4:128816214 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1124 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1124 DeepMRMD:1;iRNA_m5C:1 1125 chr14 24900790 24900790 1 + C T LUAD 24900790 + 24900770 24900810 41 CTGCCTGGCCTGGAGCACGTCAGCCCATCTGGTGCCCAGGG CTGCCTGGCCTGGAGCACGTTAGCCCATCTGGTGCCCAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KHNYN ENSG00000100441 CDS Human protein_coding chr14:24900790 chr14:24900790 nonsynonymous SNV 0.911 0 21 hm5C_associated_SNPs_1125 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1125 DeepMRMD:1;iRNA_m5C:1 1126 chr17 21731040 21731040 1 + C G LUAD 21731040 + 21731020 21731060 41 GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT GATAAAGAAGGCATCCCCCCGGACCAGCAGAGGCTCATCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731040 chr17:21731040 synonymous SNV . 0 21 hm5C_associated_SNPs_1126 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1126 DeepMRMD:1;iRNA_m5C:1 1127 chr2 71148413 71148413 1 + C T LUAD 71148413 + 71148393 71148433 41 AGCTGAACCTCTCCGAGACCCAGGTAAGAGACCAGGGCCAG AGCTGAACCTCTCCGAGACCTAGGTAAGAGACCAGGGCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VAX2 ENSG00000116035 CDS Human protein_coding chr2:71148413 chr2:71148413 stopgain 0.997 1 21 hm5C_associated_SNPs_1127 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1127 DeepMRMD:1;iRNA_m5C:1 1128 chr5 139947246 139947246 1 + C T LUAD 139947246 + 139947226 139947266 41 GCAGGGGGCCTTCAAGTTCCCGGGAACACCCTTCCCAGTCC GCAGGGGGCCTTCAAGTTCCTGGGAACACCCTTCCCAGTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC35A4 ENSG00000176087 CDS Human protein_coding chr5:139947246 chr5:139947246 synonymous SNV . 0 21 hm5C_associated_SNPs_1128 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1128 DeepMRMD:1;iRNA_m5C:1 1129 chr17 74554932 74554932 1 + C G LUAD 74554932 + 74554912 74554952 41 GGTATCTTTTGTGAGGAGGTCTGACTTGCTGAGGCTCAGCT GGTATCTTTTGTGAGGAGGTGTGACTTGCTGAGGCTCAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1C ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74554932 chr17:74554932 . . 0 21 hm5C_associated_SNPs_1129 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_1129 DeepMRMD:1;iRNA_m5C:1 1130 chr2 135883796 135883796 1 + C T LUAD 135883796 + 135883776 135883816 41 CCTCATCTGACCGAAGGGATCATTGTGGATAATGATGTTTA CCTCATCTGACCGAAGGGATTATTGTGGATAATGATGTTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883796 chr2:135883796 synonymous SNV . 0 21 hm5C_associated_SNPs_1130 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1130 DeepMRMD:1;iRNA_m5C:1 1131 chr9 135947032 135947032 1 + C A LUAD 135947032 + 135947012 135947052 41 ACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGG ACTCCGAGACCGCCCCCGTGACGCCCACGGGTGACTCCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947032 chr9:135947032 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_1131 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1131 DeepMRMD:1;iRNA_m5C:1 1132 chr13 94679996 94679996 1 + C A LUAD 94679996 + 94679976 94680016 41 TCTGCAGGTCAGCCCAACCCCAGGGTGTATCCGTGCCCTCA TCTGCAGGTCAGCCCAACCCAAGGGTGTATCCGTGCCCTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:94679996 chr13:94679996 nonsynonymous SNV 0.991 1 21 hm5C_associated_SNPs_1132 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1132 DeepMRMD:1;iRNA_m5C:1 1133 chr7 130021575 130021575 1 + C T LUAD 130021575 + 130021555 130021595 41 TTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGA TTTCTGGAGTCCCACGGCATTAGCTATGAGACCATGATCGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021575 chr7:130021575 synonymous SNV . 0 21 hm5C_associated_SNPs_1133 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1133 DeepMRMD:1;iRNA_m5C:1 1134 chr22 50277613 50277613 1 + C G LUAD 50277613 + 50277593 50277633 41 TACGACGTGGCCATGGAGGCCGTGACCCAGAGCCTCCTTTC TACGACGTGGCCATGGAGGCGGTGACCCAGAGCCTCCTTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBED4 ENSG00000100426 CDS Human protein_coding chr22:50277613 chr22:50277613 synonymous SNV . 0 21 hm5C_associated_SNPs_1134 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_1134 DeepMRMD:1;iRNA_m5C:1 1135 chrX 73045871 73045871 1 + G A LUAD 73045871 - 73045851 73045891 41 CCTGGGACAAAGCGAGGTCCCAAGGGGACAGCCTGAACTCC CCTGGGACAAAGCGAGGTCCTAAGGGGACAGCCTGAACTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045871 chrX:73045871 . . 0 21 hm5C_associated_SNPs_1135 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_1135 DeepMRMD:1;iRNA_m5C:1 1136 chrX 106884134 106884134 1 + C A LUAD 106884134 + 106884114 106884154 41 TTCCTCCCCTCCATTTAGAGCCGGGCGCCAATCTCAGCCAA TTCCTCCCCTCCATTTAGAGACGGGCGCCAATCTCAGCCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884134 chrX:106884134 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1136 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1136 DeepMRMD:1;iRNA_m5C:1 1137 chr7 101188641 101188641 1 + C A LUAD 101188641 + 101188621 101188661 41 CTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGAT CTCCTGGGGCCTCCAGGGCCACGTGGGCTTCCTGGAGAGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188641 chr7:101188641 synonymous SNV . 0 21 hm5C_associated_SNPs_1137 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1137 DeepMRMD:1;iRNA_m5C:1 1138 chr15 40269028 40269028 1 + C G LUAD 40269028 + 40269008 40269048 41 GAGGACGAGCACGGTGGCGTCTTCTCCCAGTCCTTCCTGTA GAGGACGAGCACGGTGGCGTGTTCTCCCAGTCCTTCCTGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40269028 chr15:40269028 synonymous SNV . 0 21 hm5C_associated_SNPs_1138 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1138 DeepMRMD:1;iRNA_m5C:1 1139 chr11 118344408 118344408 1 + C T LUAD 118344408 + 118344388 118344428 41 GTTTACCCCAGGCTCTCAGACTGAAAGAGGGAGAAATAAAG GTTTACCCCAGGCTCTCAGATTGAAAGAGGGAGAAATAAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118344408 chr11:118344408 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_1139 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1139 DeepMRMD:1;iRNA_m5C:1 1140 chr7 142460282 142460282 1 + C A LUAD 142460282 + 142460262 142460302 41 TCTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGC TCTCTTCCTGATCCTCACAGACGACTACCCAGACGAGCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460282 chr7:142460282 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_1140 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1140 DeepMRMD:1;iRNA_m5C:1 1141 chr5 37026368 37026368 1 + C G LUAD 37026368 + 37026348 37026388 41 ATTCCAGAAACTCTGGTTTACTCCAACTCCACACAATGACA ATTCCAGAAACTCTGGTTTAGTCCAACTCCACACAATGACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:37026368 chr5:37026368 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1141 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1141 DeepMRMD:1;iRNA_m5C:1 1142 chr7 94057032 94057032 1 + C A LUAD 94057032 + 94057012 94057052 41 GAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCT GAGACTTCTACAGGGCTGACAAGCCTCGCTCAGCACCTTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057032 chr7:94057032 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1142 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1142 DeepMRMD:1;iRNA_m5C:1 1143 chr7 142459828 142459828 1 + C A LUAD 142459828 + 142459808 142459848 41 GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCT GCCCACCGCCCCTCCAGCCAATGGCACGAAGTGCCTCATCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459828 chr7:142459828 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_1143 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1143 DeepMRMD:1;iRNA_m5C:1 1144 chr15 65152098 65152098 1 + C T LUAD 65152098 + 65152078 65152118 41 CCATCTTGCCCACAGGTCAGCGACATCAAATTCCAGGCACC CCATCTTGCCCACAGGTCAGTGACATCAAATTCCAGGCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65152098 chr15:65152098 synonymous SNV . 0 21 hm5C_associated_SNPs_1144 0 0 0 0 2 chromatin 1 0 1 1 hm5C_site_1144 DeepMRMD:1;iRNA_m5C:1 1145 chr19 3533341 3533341 1 + C T LUAD 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATCCTTGTCTGGAAGTACCTCTCCCTGACCCAGGTGGCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533341 nonsynonymous SNV 0.976 4 21 hm5C_associated_SNPs_1145 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1145 DeepMRMD:1;iRNA_m5C:1 1146 chr20 62187844 62187844 1 + C A LUAD 62187844 + 62187824 62187864 41 GTCCGAAACCTGCTGCCCAACCGATCCTATAAGTTCACCAT GTCCGAAACCTGCTGCCCAAACGATCCTATAAGTTCACCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FNDC11 ENSG00000125531 CDS Human protein_coding chr20:62187844 chr20:62187844 nonsynonymous SNV 0.892 1 21 hm5C_associated_SNPs_1146 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1146 DeepMRMD:1;iRNA_m5C:1 1147 chr11 65482191 65482191 1 + C G LUAD 65482191 + 65482171 65482211 41 GCCTCAAGTACGGCCGTAGTCTCAAGTGTCTTCAGCGTCAT GCCTCAAGTACGGCCGTAGTGTCAAGTGTCTTCAGCGTCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KAT5 ENSG00000172977 CDS Human protein_coding chr11:65482191 chr11:65482191 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1147 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1147 DeepMRMD:1;iRNA_m5C:1 1148 chr7 142459766 142459766 1 + C A LUAD 142459766 + 142459746 142459786 41 ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC ATCATGTTAATCAAGCTCTCATCACGTGCAGTAATCAACGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459766 chr7:142459766 synonymous SNV . 0 21 hm5C_associated_SNPs_1148 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1148 DeepMRMD:1;iRNA_m5C:1 1149 chr18 19209061 19209061 1 + C T LUAD 19209061 + 19209041 19209081 41 GAAGAGGAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGA GAAGAGGAAGAGGAAGAGGATGTGGCCGTGGCAGAGGAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209061 chr18:19209061 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1149 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1149 DeepMRMD:1;iRNA_m5C:1 1150 chr3 44815917 44815917 1 + C T LUAD 44815917 + 44815897 44815937 41 CAGCGTGACAAATGGTCAGTCTAACCAACCAAGGTAAGGAG CAGCGTGACAAATGGTCAGTTTAACCAACCAAGGTAAGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF15 ENSG00000163808 CDS Human protein_coding chr3:44815917 chr3:44815917 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1150 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1150 DeepMRMD:1;iRNA_m5C:1 1151 chr4 7691293 7691293 1 + C T LUAD 7691293 + 7691273 7691313 41 GTGCACACCAAGGACACCGCCCCAGGCCTCATCATGGGTGC GTGCACACCAAGGACACCGCTCCAGGCCTCATCATGGGTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7691293 chr4:7691293 synonymous SNV . 0 21 hm5C_associated_SNPs_1151 0 0 0 0 2 nucleus 1 0 1 1 hm5C_site_1151 DeepMRMD:1;iRNA_m5C:1 1152 chr7 142459867 142459867 1 + C A LUAD 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTCTGGCTGGGGCAACACTGAGAGCTCTGGCGGTGAGTGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459867 nonsynonymous SNV 0.023 1 21 hm5C_associated_SNPs_1152 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1152 DeepMRMD:1;iRNA_m5C:1 1153 chr6 160212138 160212138 1 + C T LUAD 160212138 + 160212118 160212158 41 GGCTGGCGGACGGTGTTTCCCTCCCGTGAGTTCTGGCACAG GGCTGGCGGACGGTGTTTCCTTCCCGTGAGTTCTGGCACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160212138 chr6:160212138 synonymous SNV . 0 21 hm5C_associated_SNPs_1153 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1153 DeepMRMD:1;iRNA_m5C:1 1154 chr5 95091260 95091260 1 + C T LUAD 95091260 + 95091240 95091280 41 TGCGCTGTAAGCCATGTTTTCATGCTGCTTTTCAATGTGAA TGCGCTGTAAGCCATGTTTTTATGCTGCTTTTCAATGTGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RHOBTB3 ENSG00000164292 CDS Human protein_coding chr5:95091260 chr5:95091260 synonymous SNV . 0 21 hm5C_associated_SNPs_1154 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1154 DeepMRMD:1;iRNA_m5C:1 1155 chr7 142458452 142458452 1 + C A LUAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAAATGTGAGGAGAATTCTGTCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458452 nonsynonymous SNV 0.033 2 21 hm5C_associated_SNPs_1155 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1155 DeepMRMD:1;iRNA_m5C:1 1156 chr10 7785208 7785208 1 + C G LUAD 7785208 + 7785188 7785228 41 AAAAATCCTCAACCTGGTTTCTGACCCAGAATCAGGTAAAA AAAAATCCTCAACCTGGTTTGTGACCCAGAATCAGGTAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7785208 chr10:7785208 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1156 0 0 1 0 2 cytosol 1 0 1 1 hm5C_site_1156 DeepMRMD:1;iRNA_m5C:1 1157 chr2 220503474 220503474 1 + C A LUAD 220503474 + 220503454 220503494 41 GACCTCTCCCGATAAGCGCTCGTGGTTCATCCCACCCCTGG GACCTCTCCCGATAAGCGCTAGTGGTTCATCCCACCCCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503474 chr2:220503474 stopgain 0.943 1 21 hm5C_associated_SNPs_1157 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1157 DeepMRMD:1;iRNA_m5C:1 1158 chr7 66773926 66773926 1 + C T LUAD 66773926 + 66773906 66773946 41 ATACATCCTTTTGTAGGACTCGGGGGACTATCCTCTGACAG ATACATCCTTTTGTAGGACTTGGGGGACTATCCTCTGACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control STAG3L4 ENSG00000106610 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:66773926 chr7:66773926 . . 0 21 hm5C_associated_SNPs_1158 0 0 1 0 1 unknown 1 0 1 1 hm5C_site_1158 DeepMRMD:1;iRNA_m5C:1 1159 chr7 142459714 142459714 1 + C G LUAD 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATCCGCCACCGCCAATACGACAGGAAGACTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459714 nonsynonymous SNV 0.015 5 21 hm5C_associated_SNPs_1159 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1159 DeepMRMD:1;iRNA_m5C:1 1160 chr12 6979504 6979504 1 + C A LUAD 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCCTTGTGGGTGGTGCTTACCTCAAGCCCGAATTCGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979504 nonsynonymous SNV 0.977 4 21 hm5C_associated_SNPs_1160 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1160 DeepMRMD:1;iRNA_m5C:1 1161 chr2 32673994 32673994 1 + C T LUAD 32673994 + 32673974 32674014 41 TGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTTTATT TGATTTATCAGATGTCCTTTTAGGTAGTGATTTCTTTTATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673994 chr2:32673994 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1161 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1161 DeepMRMD:1;iRNA_m5C:1 1162 chr7 5644976 5644976 1 + C A LUAD 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA GGCGACACTCCTGTGGACTTATTCTTCGAGTTCTGCGACTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644976 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1162 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1162 DeepMRMD:1;iRNA_m5C:1 1163 chr5 169020446 169020446 1 + C G LUAD 169020446 + 169020426 169020466 41 TCATCAGAAGGAACTCCTCTCTTGTAAATCAGAGGAACTGC TCATCAGAAGGAACTCCTCTGTTGTAAATCAGAGGAACTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169020446 chr5:169020446 nonsynonymous SNV 0.327 1 21 hm5C_associated_SNPs_1163 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1163 DeepMRMD:1;iRNA_m5C:1 1164 chr11 62656092 62656092 1 + C T LUAD 62656092 + 62656072 62656112 41 GCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAACGCC GCCAGGCCGTGAGGAGGGCTTCCCTCTTGAGCTGGAACGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62656092 chr11:62656092 nonsynonymous SNV 0.005 3 21 hm5C_associated_SNPs_1164 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1164 DeepMRMD:1;iRNA_m5C:1 1165 chr10 89505590 89505590 1 + C T LUAD 89505590 + 89505570 89505610 41 TGTTGCCACCCTGTAACAGGCACAATGAGTTTGACTTCATC TGTTGCCACCCTGTAACAGGTACAATGAGTTTGACTTCATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89505590 chr10:89505590 nonsynonymous SNV 0.995 3 21 hm5C_associated_SNPs_1165 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1165 DeepMRMD:1;iRNA_m5C:1 1166 chr7 142458527 142458527 1 + C A LUAD 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAAAGAACAGTGGGTGGTATCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458527 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_1166 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1166 DeepMRMD:1;iRNA_m5C:1 1167 chrX 118109183 118109183 1 + C A LUAD 118109183 + 118109163 118109203 41 GACGGGGGCCGCCGCGGCTGCGGCGGCCACCGAGGTGTGGG GACGGGGGCCGCCGCGGCTGAGGCGGCCACCGAGGTGTGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109183 chrX:118109183 nonsynonymous SNV 0.011 0 21 hm5C_associated_SNPs_1167 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_1167 DeepMRMD:1;iRNA_m5C:1 1168 chr6 20402610 20402610 1 + C T LUAD 20402610 + 20402590 20402630 41 GGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGC GGCTTCGCCGCCGCCGCCGCTGCTGCCGCCGCCCCGGGCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402610 chr6:20402610 synonymous SNV 0.188 0 21 hm5C_associated_SNPs_1168 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1168 DeepMRMD:1;iRNA_m5C:1 1169 chr7 142460308 142460308 1 + C A LUAD 142460308 + 142460288 142460328 41 ACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGC ACCCAGACGAGCTGCAGTGCATGGATGCTCCTGTGCTGAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460308 chr7:142460308 nonsynonymous SNV 0.028 5 21 hm5C_associated_SNPs_1169 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1169 DeepMRMD:1;iRNA_m5C:1 1170 chr6 33374114 33374114 1 + C T LUAD 33374114 + 33374094 33374134 41 GAGGCCTGCAGTGTGGGGCCCCCCTCAGTCTTGTGGACCTG GAGGCCTGCAGTGTGGGGCCTCCCTCAGTCTTGTGGACCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33374114 chr6:33374114 nonsynonymous SNV 0.729 0 21 hm5C_associated_SNPs_1170 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1170 DeepMRMD:1;iRNA_m5C:1 1171 chr8 104066182 104066182 1 + C T LUAD 104066182 + 104066162 104066202 41 TTGTTCTTGATTCAGAGTATCTCGTCACATTACTGGTAGTA TTGTTCTTGATTCAGAGTATTTCGTCACATTACTGGTAGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104066182 chr8:104066182 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_1171 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1171 DeepMRMD:1;iRNA_m5C:1 1172 chr7 23221741 23221741 1 + C T LUAD 23221741 + 23221721 23221761 41 TCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTGG TCTTCCTTCAAGGCCGGTGCTGCTTTGGAGATCGGTGCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221741 chr7:23221741 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1172 0 0 1 3 1 Cytosol 1 0 1 1 hm5C_site_1172 DeepMRMD:1;iRNA_m5C:1 1173 chr4 57180982 57180982 1 + C A LUAD 57180982 + 57180962 57181002 41 GACCAGGAACGCCTGAAACCCGAAGGACAAAGAGAACACTC GACCAGGAACGCCTGAAACCAGAAGGACAAAGAGAACACTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180982 chr4:57180982 synonymous SNV . 0 21 hm5C_associated_SNPs_1173 0 0 0 0 0 cytosol 1 0 1 1 hm5C_site_1173 DeepMRMD:1;iRNA_m5C:1 1174 chr10 118314708 118314708 1 + C A LUAD 118314708 + 118314688 118314728 41 AGGGTTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTG AGGGTTGGACCCAGCAGAACATTGCTTTCAGGGCACACCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314708 chr10:118314708 nonsynonymous SNV 0.941 5 21 hm5C_associated_SNPs_1174 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_1174 DeepMRMD:1;iRNA_m5C:1 1175 chr11 61106796 61106796 1 + C A LUAD 61106796 + 61106776 61106816 41 GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT GGCCTGGCCCGGGAGCAGGCACGGGCTGAAGGCATCCCGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106796 chr11:61106796 synonymous SNV . 0 21 hm5C_associated_SNPs_1175 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1175 DeepMRMD:1;iRNA_m5C:1 1176 chr10 31812931 31812931 1 + C T LUAD 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA GAATGACTCTGATTCTACACTGCCCAAAAAGAAAATGCGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812931 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_1176 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1176 DeepMRMD:1;iRNA_m5C:1 1177 chrX 107909782 107909782 1 + C A LUAD 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCGAAAAAGGCAAACCCGGTAAAGATGGTATTCCTGGACCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909782 nonsynonymous SNV 0.993 2 21 hm5C_associated_SNPs_1177 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1177 DeepMRMD:1;iRNA_m5C:1 1178 chr18 12725465 12725465 1 + C T LUAD 12725465 + 12725445 12725485 41 ACCCCACAGTATCTGCCTCACGGTGGAAAATACCAAGTTCT ACCCCACAGTATCTGCCTCATGGTGGAAAATACCAAGTTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12725465 chr18:12725465 nonsynonymous SNV 0.055 1 21 hm5C_associated_SNPs_1178 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1178 DeepMRMD:1;iRNA_m5C:1 1179 chr7 142459770 142459770 1 + C A LUAD 142459770 + 142459750 142459790 41 TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC TGTTAATCAAGCTCTCCTCAAGTGCAGTAATCAACGCCCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459770 chr7:142459770 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_1179 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1179 DeepMRMD:1;iRNA_m5C:1 1180 chr7 142459849 142459849 1 + C A LUAD 142459849 + 142459829 142459869 41 TGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGCGA TGGCACGAAGTGCCTCATCTATGGCTGGGGCAACACTGCGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459849 chr7:142459849 nonsynonymous SNV 0.146 5 21 hm5C_associated_SNPs_1180 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1180 DeepMRMD:1;iRNA_m5C:1 1181 chr11 66834276 66834276 1 + C T LUAD 66834276 + 66834256 66834296 41 AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG AGCGTCCTGCTGCTTTGCTTTGATGTCACCAGCCCGAACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66834276 chr11:66834276 synonymous SNV . 0 21 hm5C_associated_SNPs_1181 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1181 DeepMRMD:1;iRNA_m5C:1 1182 chr12 1755170 1755170 1 + C G LUAD 1755170 + 1755150 1755190 41 CCCAGCCCACCCCGGAGGACCTGGTCTATGTGGACCCCAGC CCCAGCCCACCCCGGAGGACGTGGTCTATGTGGACCCCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control WNT5B ENSG00000111186 CDS Human protein_coding chr12:1755170 chr12:1755170 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1182 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1182 DeepMRMD:1;iRNA_m5C:1 1183 chr10 75526854 75526854 1 + C G LUAD 75526854 + 75526834 75526874 41 TCTTTCTATTCCATACATCCCTGCCCATTGCAGAGGCCCCA TCTTTCTATTCCATACATCCGTGCCCATTGCAGAGGCCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526854 chr10:75526854 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_1183 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1183 DeepMRMD:1;iRNA_m5C:1 1184 chrX 107838784 107838784 1 + C T LUAD 107838784 + 107838764 107838804 41 CTGCATTGGAACTGGTATTTCAGGGCCTCCAGGTCAACCTG CTGCATTGGAACTGGTATTTTAGGGCCTCCAGGTCAACCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107838784 chrX:107838784 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1184 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1184 DeepMRMD:1;iRNA_m5C:1 1185 chr5 82834788 82834788 1 + C A LUAD 82834788 + 82834768 82834808 41 CATATCTGACTCAGAAGGACCCAGTAGCACCATGGTCAGCA CATATCTGACTCAGAAGGACACAGTAGCACCATGGTCAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82834788 chr5:82834788 nonsynonymous SNV 0.099 2 21 hm5C_associated_SNPs_1185 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1185 DeepMRMD:1;iRNA_m5C:1 1186 chr7 142458515 142458515 1 + C T LUAD 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGTTCCCTCATCAACGAACAGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458515 synonymous SNV . 0 21 hm5C_associated_SNPs_1186 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1186 DeepMRMD:1;iRNA_m5C:1 1187 chr16 3117519 3117519 1 + C T LUAD 3117519 + 3117499 3117539 41 GACCCTGGAGGGACAAGGATCCGGCCCTTTGGTGCCAACTC GACCCTGGAGGGACAAGGATTCGGCCCTTTGGTGCCAACTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IL32 ENSG00000008517 CDS Human protein_coding chr16:3117519 chr16:3117519 nonsynonymous SNV 0.016 1 21 hm5C_associated_SNPs_1187 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1187 DeepMRMD:1;iRNA_m5C:1 1188 chr9 135073628 135073628 1 + C A LUAD 135073628 + 135073608 135073648 41 AACGGGCGCACCTGGCAGCCCTACCAGTTCTACGCCGAGGA AACGGGCGCACCTGGCAGCCATACCAGTTCTACGCCGAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135073628 chr9:135073628 synonymous SNV . 0 21 hm5C_associated_SNPs_1188 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1188 DeepMRMD:1;iRNA_m5C:1 1189 chr16 87730243 87730243 1 + C A LUSC 87730243 + 87730223 87730263 41 TCAACATCGGAGTCGCCATTCTGTTTATTAACTTTTTCATC TCAACATCGGAGTCGCCATTATGTTTATTAACTTTTTCATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control JPH3 ENSG00000154118 CDS Human protein_coding chr16:87730243 chr16:87730243 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1189 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1189 DeepMRMD:1;iRNA_m5C:1 1190 chr17 29560175 29560175 1 + C T LUSC 29560175 + 29560155 29560195 41 TGGTCACAATGATGGGTGATCAAGGAGAACTCCCTATAGCG TGGTCACAATGATGGGTGATTAAGGAGAACTCCCTATAGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29560175 chr17:29560175 stopgain 0.999 1 21 hm5C_associated_SNPs_1190 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1190 DeepMRMD:1;iRNA_m5C:1 1191 chr19 7676663 7676663 1 + C T LUSC 7676663 + 7676643 7676683 41 GGAGACCCTGTGCTCCTCCGCTCTGTGAGCTCGGACAGCCT GGAGACCCTGTGCTCCTCCGTTCTGTGAGCTCGGACAGCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7676663 chr19:7676663 synonymous SNV . 0 21 hm5C_associated_SNPs_1191 0 0 1 0 1 nucleus 1 0 1 1 hm5C_site_1191 DeepMRMD:1;iRNA_m5C:1 1192 chr13 111111217 111111217 1 + C G LUSC 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGGCATCAACGGGGAGCGGGGGAGGAAAGGGGACAGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111217 nonsynonymous SNV 0.225 1 21 hm5C_associated_SNPs_1192 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1192 DeepMRMD:1;iRNA_m5C:1 1193 chr3 122419761 122419761 1 + C T LUSC 122419761 + 122419741 122419781 41 AATGAAGGAGGGAGGCAGCCCCGCTGGGCAGAAGTGCTTCT AATGAAGGAGGGAGGCAGCCTCGCTGGGCAGAAGTGCTTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARP14 ENSG00000173193 CDS Human protein_coding chr3:122419761 chr3:122419761 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_1193 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1193 DeepMRMD:1;iRNA_m5C:1 1194 chr10 17277176 17277176 1 + C A LUSC 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTCACTGGAACGCCAGATGCGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277176 synonymous SNV . 0 21 hm5C_associated_SNPs_1194 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1194 DeepMRMD:1;iRNA_m5C:1 1195 chr3 148562331 148562331 1 + C A LUSC 148562331 + 148562311 148562351 41 ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAT ACAAGTTAGACTTTTATGTCATGCCTGTGCTCAATATTGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562331 chr3:148562331 nonsynonymous SNV 0.993 2 21 hm5C_associated_SNPs_1195 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_1195 DeepMRMD:1;iRNA_m5C:1 1196 chr11 75508290 75508290 1 + C T LUSC 75508290 + 75508270 75508310 41 CATCATCGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCA CATCATCGTGGTCGGGGGTGTGGCTGAGTCTCTGAGCTCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508290 chr11:75508290 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_1196 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1196 DeepMRMD:1;iRNA_m5C:1 1197 chr16 89645265 89645265 1 + C T LUSC 89645265 + 89645245 89645285 41 CTGGGTTACGGCCTCCACAGCCAGCCCAAAAGTGGCTTCTG CTGGGTTACGGCCTCCACAGTCAGCCCAAAAGTGGCTTCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89645265 chr16:89645265 nonsynonymous SNV 0.014 0 21 hm5C_associated_SNPs_1197 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1197 DeepMRMD:1;iRNA_m5C:1 1198 chr7 897491 897491 1 + C A LUSC 897491 + 897471 897511 41 TGGTGAGCAGCTCCTGCCCACAGTCGAGCACCTCCAGCTGG TGGTGAGCAGCTCCTGCCCAAAGTCGAGCACCTCCAGCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:897491 chr7:897491 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1198 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1198 DeepMRMD:1;iRNA_m5C:1 1199 chr9 123917066 123917066 1 + C G LUSC 123917066 + 123917046 123917086 41 TAGAAAAATCACTCAAACATCATGAAGATATTGTAGATGAA TAGAAAAATCACTCAAACATGATGAAGATATTGTAGATGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123917066 chr9:123917066 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_1199 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1199 DeepMRMD:1;iRNA_m5C:1 1200 chr14 94568211 94568211 1 + C A LUSC 94568211 + 94568191 94568231 41 CAGTGCCATGGGCTTCACCTCAGTAGGAATCGCCGCATCCT CAGTGCCATGGGCTTCACCTAAGTAGGAATCGCCGCATCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568211 chr14:94568211 stopgain 0.000 0 21 hm5C_associated_SNPs_1200 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1200 DeepMRMD:1;iRNA_m5C:1 1201 chr20 34458925 34458925 1 + C G LUSC 34458925 + 34458905 34458945 41 AAACACTGACAAAGACTTATCGAGGAGACGTTCCTCCAGGC AAACACTGACAAAGACTTATGGAGGAGACGTTCCTCCAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PHF20 ENSG00000025293 CDS Human protein_coding chr20:34458925 chr20:34458925 nonsynonymous SNV 0.901 2 21 hm5C_associated_SNPs_1201 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1201 DeepMRMD:1;iRNA_m5C:1 1202 chr22 26400695 26400695 1 + C A LUSC 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGGATAACGTCTACATCCTCAGCTCCCAGCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400695 nonsynonymous SNV 0.887 4 21 hm5C_associated_SNPs_1202 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_1202 DeepMRMD:1;iRNA_m5C:1 1203 chr4 502758 502758 1 + C T LUSC 502758 + 502738 502778 41 TCTGCGTTTGAAAGGAAACCCGGTGAGAATTTAGGAATGTT TCTGCGTTTGAAAGGAAACCTGGTGAGAATTTAGGAATGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:502758 chr4:502758 synonymous SNV . 0 21 hm5C_associated_SNPs_1203 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1203 DeepMRMD:1;iRNA_m5C:1 1204 chr2 48033370 48033370 1 + C T LUSC 48033370 + 48033350 48033390 41 TACTGCAACATTTGATGGGACGGCAATAGCAAATGCAGTTG TACTGCAACATTTGATGGGATGGCAATAGCAAATGCAGTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSH6 ENSG00000116062 CDS Human protein_coding chr2:48033370 chr2:48033370 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_1204 4 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1204 DeepMRMD:1;iRNA_m5C:1 Lynch syndrome Lynch syndrome 1205 chr1 28159279 28159279 1 + C T LUSC 28159279 + 28159259 28159299 41 TTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGA TTTTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159279 chr1:28159279 synonymous SNV . 0 21 hm5C_associated_SNPs_1205 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1205 DeepMRMD:1;iRNA_m5C:1 1206 chr1 183091288 183091288 1 + C T LUSC 183091288 + 183091268 183091308 41 TTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTGTCCGT TTCAACTGCAGGCACCTCCTTCGATTGCCAACCCTGTCCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091288 chr1:183091288 nonsynonymous SNV 0.940 0 21 hm5C_associated_SNPs_1206 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1206 DeepMRMD:1;iRNA_m5C:1 1207 chr17 78321325 78321325 1 + C T LUSC 78321325 + 78321305 78321345 41 AGACATTCTTCGAGGGGGACCAGCAGCCGGAGATTATTTTT AGACATTCTTCGAGGGGGACTAGCAGCCGGAGATTATTTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78321325 chr17:78321325 stopgain 0.422 0 21 hm5C_associated_SNPs_1207 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1207 DeepMRMD:1;iRNA_m5C:1 1208 chr1 28159278 28159278 1 + C T LUSC 28159278 + 28159258 28159298 41 ATTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGG ATTTTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159278 chr1:28159278 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1208 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1208 DeepMRMD:1;iRNA_m5C:1 1209 chr7 128486405 128486405 1 + C T LUSC 128486405 + 128486385 128486425 41 AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC AGGTCGCTGTGCCCAAGAGCTCCTTCCGAGTGGGCGTGACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486405 chr7:128486405 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_1209 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1209 DeepMRMD:1;iRNA_m5C:1 1210 chr22 29695312 29695312 1 + C T LUSC 29695312 + 29695292 29695332 41 GCTTCCTCCCGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG GCTTCCTCCCGCCACCCTTTTCGCCCCCGGGTAGGTGCAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695312 chr22:29695312 nonsynonymous SNV 0.915 3 21 hm5C_associated_SNPs_1210 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1210 DeepMRMD:1;iRNA_m5C:1 1211 chr19 39215157 39215157 1 + C T LUSC 39215157 + 39215137 39215177 41 GAGCACCTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGT GAGCACCTGCGCCGCCAGTTTGCCAGCCAGGCCAATGTTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215157 chr19:39215157 synonymous SNV . 0 21 hm5C_associated_SNPs_1211 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1211 DeepMRMD:1;iRNA_m5C:1 1212 chr5 5462527 5462527 1 + C T LUSC 5462527 + 5462507 5462547 41 CTGTGGAGACACAGGGAGATCTGGTGGTGAGGCCCTGGCTG CTGTGGAGACACAGGGAGATTTGGTGGTGAGGCCCTGGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ICE1 ENSG00000164151 CDS Human protein_coding chr5:5462527 chr5:5462527 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_1212 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1212 DeepMRMD:1;iRNA_m5C:1 1213 chr7 87005024 87005024 1 + C T LUSC 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGTGAACTCGATGGGCTAAGGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005024 stopgain 0.998 1 21 hm5C_associated_SNPs_1213 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1213 DeepMRMD:1;iRNA_m5C:1 1214 chr7 142460742 142460742 1 + C A LUSC 142460742 + 142460722 142460762 41 GATTCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGG GATTCTGGTGGCCCTGTGGTATGCAATGGACAGCTCCAAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460742 chr7:142460742 synonymous SNV . 0 21 hm5C_associated_SNPs_1214 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1214 DeepMRMD:1;iRNA_m5C:1 1215 chr11 4091338 4091338 1 + C G LUSC 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTGCCTATATGCAGAACCGTTACTCCAAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091338 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1215 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1215 DeepMRMD:1;iRNA_m5C:1 1216 chr1 22336303 22336303 1 + C T LUSC 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCATCTGGAAGTCCACGGTGTTCACTCGAGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336303 nonsynonymous SNV 0.238 4 21 hm5C_associated_SNPs_1216 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1216 DeepMRMD:1;iRNA_m5C:1 1217 chr6 35285962 35285962 1 + C T LUSC 35285962 + 35285942 35285982 41 TTCGGCAGCCATCCAGATGGCGATCCGGCTGCAGGCCGAGG TTCGGCAGCCATCCAGATGGTGATCCGGCTGCAGGCCGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DEF6 ENSG00000023892 CDS Human protein_coding chr6:35285962 chr6:35285962 nonsynonymous SNV 0.981 3 21 hm5C_associated_SNPs_1217 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1217 DeepMRMD:1;iRNA_m5C:1 1218 chr1 47838719 47838719 1 + C G LUSC 47838719 + 47838699 47838739 41 GACAACCTTCAAGGATGGAACAAGACCATGGATGGGAAGGC GACAACCTTCAAGGATGGAAGAAGACCATGGATGGGAAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838719 chr1:47838719 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_1218 0 0 1 2 2 chromatin 1 0 1 1 hm5C_site_1218 DeepMRMD:1;iRNA_m5C:1 1219 chr19 39215195 39215195 1 + C A LUSC 39215195 + 39215175 39215215 41 TGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGGCACG TGTGGGGCCCTGGATCCAGAACAAGATGGAGGTGAGGCACG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215195 chr19:39215195 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_1219 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1219 DeepMRMD:1;iRNA_m5C:1 1220 chr12 111744769 111744769 1 + C T LUSC 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCGGGCCCTCGGCTGGAGGCTGCGCTGGCCTCCAAGGACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744769 synonymous SNV . 0 21 hm5C_associated_SNPs_1220 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1220 DeepMRMD:1;iRNA_m5C:1 1221 chr19 58906108 58906108 1 + C G LUSC 58906108 + 58906088 58906128 41 CTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTCCCAGCT CTGGAGCGTGTGGCCAAGTCGAACCGCTGATTTTCCCAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906108 chr19:58906108 synonymous SNV . 0 21 hm5C_associated_SNPs_1221 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1221 DeepMRMD:1;iRNA_m5C:1 1222 chr19 16339738 16339738 1 + C T LUSC 16339738 + 16339718 16339758 41 GTGGTCCATCAAGTCCTTCCCGGTGAGCACTCTGTCCAGAC GTGGTCCATCAAGTCCTTCCTGGTGAGCACTCTGTCCAGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16339738 chr19:16339738 nonsynonymous SNV 0.964 4 21 hm5C_associated_SNPs_1222 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1222 DeepMRMD:1;iRNA_m5C:1 1223 chr7 142459707 142459707 1 + C T LUSC 142459707 + 142459687 142459727 41 TCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGG TCAATGCAGCCAAGATCATCTGCCACCCCCAATACGACAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459707 chr7:142459707 nonsynonymous SNV 0.007 2 21 hm5C_associated_SNPs_1223 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1223 DeepMRMD:1;iRNA_m5C:1 1224 chr11 61404877 61404877 1 + C A LUSC 61404877 + 61404857 61404897 41 TCAGTGCCCCATTCTATCATCGACGGGTACAAACGAGTCCT TCAGTGCCCCATTCTATCATAGACGGGTACAAACGAGTCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404877 chr11:61404877 . . 0 21 hm5C_associated_SNPs_1224 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_1224 DeepMRMD:1;iRNA_m5C:1 1225 chr5 5457687 5457687 1 + C T LUSC 5457687 + 5457667 5457707 41 AGGTTTTAGTACAAAGTCATCGTGACGGTGGTAGTACTGAA AGGTTTTAGTACAAAGTCATTGTGACGGTGGTAGTACTGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ICE1 ENSG00000164151 CDS Human protein_coding chr5:5457687 chr5:5457687 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1225 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1225 DeepMRMD:1;iRNA_m5C:1 1226 chr1 41215344 41215344 1 + C T LUSC 41215344 + 41215324 41215364 41 TTCACACAGAAGATAACAAGCGCCGGACTCTACAGGTATTA TTCACACAGAAGATAACAAGTGCCGGACTCTACAGGTATTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFYC ENSG00000066136 CDS Human protein_coding chr1:41215344 chr1:41215344 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1226 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1226 DeepMRMD:1;iRNA_m5C:1 1227 chr14 95058452 95058452 1 + C A LUSC 95058452 + 95058432 95058472 41 AACCAGAGCAGCGGCAGCCACGGGGACAATATTCACTTTCA AACCAGAGCAGCGGCAGCCAAGGGGACAATATTCACTTTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control SERPINA5 ENSG00000188488;ENSG00000273259 CDS Human other chr14:95058452 chr14:95058452 nonsynonymous SNV 0.004 4 21 hm5C_associated_SNPs_1227 0 0 1 0 1 cytosol 1 0 1 1 hm5C_site_1227 DeepMRMD:1;iRNA_m5C:1 1228 chr8 146032912 146032912 1 + C T LUSC 146032912 + 146032892 146032932 41 CATCCACACCGGCGCCAAGCCCTTCCAGTGCACAGAGTGCG CATCCACACCGGCGCCAAGCTCTTCCAGTGCACAGAGTGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146032912 chr8:146032912 nonsynonymous SNV 0.993 0 21 hm5C_associated_SNPs_1228 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_1228 DeepMRMD:1;iRNA_m5C:1 1229 chr5 140856242 140856242 1 + C T LUSC 140856242 + 140856222 140856262 41 TTGCGCTTCGCGTGCAGACGCGGGAGGACAGCACCAAGTAC TTGCGCTTCGCGTGCAGACGTGGGAGGACAGCACCAAGTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHGC3 ENSG00000240184 CDS Human protein_coding chr5:140856242 chr5:140856242 nonsynonymous SNV 0.992 3 21 hm5C_associated_SNPs_1229 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1229 DeepMRMD:1;iRNA_m5C:1 1230 chr12 21205114 21205114 1 + C A LUSC 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGGAACCAGTCTGTGGAAACAATGGAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205114 synonymous SNV . 0 21 hm5C_associated_SNPs_1230 0 0 0 0 2 nucleus 1 0 1 1 hm5C_site_1230 DeepMRMD:1;iRNA_m5C:1 1231 chr4 41621300 41621300 1 + C T LUSC 41621300 + 41621280 41621320 41 GGCGGACTTCCCATGGTGAGCCGAAATCAGCAGTGCCTTTT GGCGGACTTCCCATGGTGAGTCGAAATCAGCAGTGCCTTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41621300 chr4:41621300 nonsynonymous SNV 0.294 2 21 hm5C_associated_SNPs_1231 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1231 DeepMRMD:1;iRNA_m5C:1 1232 chrX 135593020 135593020 1 + C A LUSC 135593020 + 135593000 135593040 41 CTGAGAGGATGGGAGGCTTTCCTCAATGCTCCTGAGGCCAA CTGAGAGGATGGGAGGCTTTACTCAATGCTCCTGAGGCCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593020 chrX:135593020 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1232 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1232 DeepMRMD:1;iRNA_m5C:1 1233 chr19 54711428 54711428 1 + C T LUSC 54711428 + 54711408 54711448 41 GGGGCTGGGGCTGGAGACGACGAGGAGGAGGATTAAGTCCA GGGGCTGGGGCTGGAGACGATGAGGAGGAGGATTAAGTCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711428 chr19:54711428 synonymous SNV . 0 21 hm5C_associated_SNPs_1233 0 0 1 1 0 Ribosome 1 0 1 1 hm5C_site_1233 DeepMRMD:1;iRNA_m5C:1 1234 chr1 26883509 26883509 1 + C G LUSC 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATACCGTCGTGAGATGAAGCCACCCTTCAAGCCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883509 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1234 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1234 DeepMRMD:1;iRNA_m5C:1 1235 chr20 62368988 62368988 1 + C T LUSC 62368988 + 62368968 62369008 41 CTCGCTGTGGGCGCTGTGCACAGCCTGCCGCAGGTAGGTCC CTCGCTGTGGGCGCTGTGCATAGCCTGCCGCAGGTAGGTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LIME1 ENSG00000203896 CDS Human protein_coding chr20:62368988 chr20:62368988 nonsynonymous SNV 0.340 2 21 hm5C_associated_SNPs_1235 0 0 1 0 1 exosome 1 0 1 1 hm5C_site_1235 DeepMRMD:1;iRNA_m5C:1 1236 chr3 10291194 10291194 1 + C T LUSC 10291194 + 10291174 10291214 41 CCTCCAAAGGCTGCCTGATTCGGAACACTCGGGGGTTCCTG CCTCCAAAGGCTGCCTGATTTGGAACACTCGGGGGTTCCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TATDN2 ENSG00000157014;ENSG00000272410 CDS Human other chr3:10291194 chr3:10291194 nonsynonymous SNV 0.169 2 21 hm5C_associated_SNPs_1236 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1236 DeepMRMD:1;iRNA_m5C:1 1237 chr1 55457683 55457683 1 + C G LUSC 55457683 + 55457663 55457703 41 CCACCCAGCTATGAGAGCATCAGCCTTGCTCTTGATGCCGT CCACCCAGCTATGAGAGCATGAGCCTTGCTCTTGATGCCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55457683 chr1:55457683 nonsynonymous SNV 0.112 1 21 hm5C_associated_SNPs_1237 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1237 DeepMRMD:1;iRNA_m5C:1 1238 chr15 36989588 36989588 1 + C A LUSC 36989588 + 36989568 36989608 41 TAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACAT TAGAGAAAAACCTGTCCTTCATAGGTAAGTATTATTCACAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989588 chr15:36989588 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_1238 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1238 DeepMRMD:1;iRNA_m5C:1 1239 chr1 22336335 22336335 1 + C T LUSC 22336335 + 22336315 22336355 41 ACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG ACTCGAGTCTCCGCCTTCATTGACTGGATTGAGGAGGTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336335 chr1:22336335 synonymous SNV . 0 21 hm5C_associated_SNPs_1239 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1239 DeepMRMD:1;iRNA_m5C:1 1240 chr7 77325886 77325886 1 + C T LUSC 77325886 + 77325866 77325906 41 GCAAGCTGCAACTCTCCTCCCGGGACCCTCCGGGTTCTCTG GCAAGCTGCAACTCTCCTCCTGGGACCCTCCGGGTTCTCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSBN1L ENSG00000187257 CDS Human protein_coding chr7:77325886 chr7:77325886 nonsynonymous SNV 0.406 2 21 hm5C_associated_SNPs_1240 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1240 DeepMRMD:1;iRNA_m5C:1 1241 chr5 134154670 134154670 1 + C T LUSC 134154670 + 134154650 134154690 41 AAGAACCCAAGGAAGGCGAGCGGAAGATTTACTTGGCAATT AAGAACCCAAGGAAGGCGAGTGGAAGATTTACTTGGCAATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134154670 chr5:134154670 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1241 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1241 DeepMRMD:1;iRNA_m5C:1 1242 chr1 110466216 110466216 1 + C T LUSC 110466216 + 110466196 110466236 41 CCCAAGGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGC CCCAAGGGACAGAGCTTTCCTCCTCCAGGCCAGGAGGGGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466216 chr1:110466216 nonsynonymous SNV 0.131 0 21 hm5C_associated_SNPs_1242 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_1242 DeepMRMD:1;iRNA_m5C:1 1243 chr2 233671354 233671354 1 + C T LUSC 233671354 + 233671334 233671374 41 CTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTA CTTTTCTCCAGGTCCAGCTCTCCCTCCTCATATGGTAAGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671354 chr2:233671354 nonsynonymous SNV 0.979 3 21 hm5C_associated_SNPs_1243 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1243 DeepMRMD:1;iRNA_m5C:1 1244 chr2 37458880 37458880 1 + C T LUSC 37458880 + 37458860 37458900 41 GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG GCTGAGGTCAGGTTTGGGGCTGTTGTGTGCCGTGGCGCGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458880 chr2:37458880 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1244 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1244 DeepMRMD:1;iRNA_m5C:1 1245 chr2 37475350 37475350 1 + C A LUSC 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATACAAAGAAGATGGGAGAGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475350 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_1245 0 0 1 2 1 chromatin 1 0 1 1 hm5C_site_1245 DeepMRMD:1;iRNA_m5C:1 1246 chr7 142457345 142457345 1 + C T LUSC 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATGAATCCATTCCTGATCCTTACCTTTGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457345 nonsynonymous SNV 0.422 1 21 hm5C_associated_SNPs_1246 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1246 DeepMRMD:1;iRNA_m5C:1 1247 chr20 54941160 54941160 1 + C T LUSC 54941160 + 54941140 54941180 41 CCTGCAATCCTGCTGAAACTCGGATTTAAAGAGTCCCTGGT CCTGCAATCCTGCTGAAACTTGGATTTAAAGAGTCCCTGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM210B ENSG00000124098 CDS Human protein_coding chr20:54941160 chr20:54941160 synonymous SNV . 0 21 hm5C_associated_SNPs_1247 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1247 DeepMRMD:1;iRNA_m5C:1 1248 chr19 18961004 18961004 1 + C T LUSC 18961004 + 18960984 18961024 41 TGTCGCAACGTCTTCCTCCTCGGCTTCATCCCGGCCAAAGC TGTCGCAACGTCTTCCTCCTTGGCTTCATCCCGGCCAAAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18961004 chr19:18961004 synonymous SNV . 0 21 hm5C_associated_SNPs_1248 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1248 DeepMRMD:1;iRNA_m5C:1 1249 chr19 39950220 39950220 1 + C G LUSC 39950220 + 39950200 39950240 41 GATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT GATCCCAATCTGTGGACTGTGAAATGTAAGGTATGTGCTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950220 chr19:39950220 synonymous SNV . 0 21 hm5C_associated_SNPs_1249 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1249 DeepMRMD:1;iRNA_m5C:1 1250 chr21 44450169 44450169 1 + C G LUSC 44450169 + 44450149 44450189 41 GGTGCCCTGGCCCCTGCCCACATCAGCGGGCTGGTCTTGGA GGTGCCCTGGCCCCTGCCCAGATCAGCGGGCTGGTCTTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44450169 chr21:44450169 nonsynonymous SNV 0.863 3 21 hm5C_associated_SNPs_1250 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1250 DeepMRMD:1;iRNA_m5C:1 1251 chr2 224824686 224824686 1 + C T LUSC 224824686 + 224824666 224824706 41 ATTGGAGCCCTGTTACAGAGCAGTGGACCTGAGAGGACTGC ATTGGAGCCCTGTTACAGAGTAGTGGACCTGAGAGGACTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824686 chr2:224824686 synonymous SNV . 0 21 hm5C_associated_SNPs_1251 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1251 DeepMRMD:1;iRNA_m5C:1 1252 chr5 177310768 177310768 1 + C A MESO 177310768 + 177310748 177310788 41 GCCTGTGATGACAAAGACGGCAAATATGACAGCAGCCGGGA GCCTGTGATGACAAAGACGGAAAATATGACAGCAGCCGGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC728554 ENSG00000170089 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:177310768 chr5:177310768 . . 0 21 hm5C_associated_SNPs_1252 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_1252 DeepMRMD:1;iRNA_m5C:1 1253 chr1 214813977 214813977 1 + C T MESO 214813977 + 214813957 214813997 41 AATATGAGAGCCTCAGGGATCTGCTAAAATCCAAAGATGCT AATATGAGAGCCTCAGGGATTTGCTAAAATCCAAAGATGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214813977 chr1:214813977 synonymous SNV . 0 21 hm5C_associated_SNPs_1253 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1253 DeepMRMD:1;iRNA_m5C:1 1254 chr20 55093270 55093270 1 + C G MESO 55093270 + 55093250 55093290 41 ACTCACAGCTCCGCCAAGCGCTCCAAGGAGGAGTCTGCCCA ACTCACAGCTCCGCCAAGCGGTCCAAGGAGGAGTCTGCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55093270 chr20:55093270 synonymous SNV . 0 21 hm5C_associated_SNPs_1254 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1254 DeepMRMD:1;iRNA_m5C:1 1255 chr1 22336262 22336262 1 + C T MESO 22336262 + 22336242 22336282 41 CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG CTGGCAGGTCCACGGTGTGATCAGCTTTGTTTCTGCCTTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336262 chr1:22336262 nonsynonymous SNV 0.977 4 21 hm5C_associated_SNPs_1255 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1255 DeepMRMD:1;iRNA_m5C:1 1256 chr6 42957366 42957366 1 + C G OV 42957366 + 42957346 42957386 41 CAGGAGCCCCCCAAGGTTGCCAAATGCACAGCCAAGCCTAG CAGGAGCCCCCCAAGGTTGCGAAATGCACAGCCAAGCCTAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42957366 chr6:42957366 synonymous SNV . 0 21 hm5C_associated_SNPs_1256 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1256 DeepMRMD:1;iRNA_m5C:1 1257 chr4 42020141 42020141 1 + C T OV 42020141 + 42020121 42020161 41 TTTACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACT TTTACAGCAGAAGGTATAGGTACAGAACTCAAAGCTCCACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020141 chr4:42020141 synonymous SNV . 0 21 hm5C_associated_SNPs_1257 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1257 DeepMRMD:1;iRNA_m5C:1 1258 chr20 62309512 62309512 1 + C G OV 62309512 + 62309492 62309532 41 GCCCAGGGCTGAACATGGAGCTGGAAGACATTGCAAAGCTG GCCCAGGGCTGAACATGGAGGTGGAAGACATTGCAAAGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62309512 chr20:62309512 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_1258 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1258 DeepMRMD:1;iRNA_m5C:1 1259 chr1 43911903 43911903 1 + C A OV 43911903 + 43911883 43911923 41 CAGCGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGC CAGCGGGCACTGCCTGGGGGAATCATCCTCATGGAACTGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911903 chr1:43911903 synonymous SNV . 0 21 hm5C_associated_SNPs_1259 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1259 DeepMRMD:1;iRNA_m5C:1 1260 chr2 32640607 32640607 1 + C A OV 32640607 + 32640587 32640627 41 TTCATTTGTTGGTAGGACTGCGGACATGCCCTGTTGAATCC TTCATTTGTTGGTAGGACTGAGGACATGCCCTGTTGAATCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32640607 chr2:32640607 synonymous SNV . 0 21 hm5C_associated_SNPs_1260 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1260 DeepMRMD:1;iRNA_m5C:1 1261 chr2 219269106 219269106 1 + C T OV 219269106 + 219269086 219269126 41 GAGCAACTCAGCCGTGTGGACGACGTGTACTCAGTGCTCAG GAGCAACTCAGCCGTGTGGATGACGTGTACTCAGTGCTCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219269106 chr2:219269106 synonymous SNV . 0 21 hm5C_associated_SNPs_1261 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1261 DeepMRMD:1;iRNA_m5C:1 1262 chr19 42854513 42854513 1 + C T OV 42854513 + 42854493 42854533 41 GCCCACTCTGCGAGGAGCATCGGGACTGCCACGCCTGCACC GCCCACTCTGCGAGGAGCATTGGGACTGCCACGCCTGCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42854513 chr19:42854513 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1262 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1262 DeepMRMD:1;iRNA_m5C:1 1263 chr15 81221505 81221505 1 + C A OV 81221505 + 81221485 81221525 41 ACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGTTTGC ACCATAGCGGAAGGACCCTCACTATAGGCCAGTAGGTTTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221505 chr15:81221505 nonsynonymous SNV 0.989 4 21 hm5C_associated_SNPs_1263 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1263 DeepMRMD:1;iRNA_m5C:1 1264 chr19 49377943 49377943 1 + C T OV 49377943 + 49377923 49377963 41 ACTTCAGGGGCTGGGGATATCGACCTGGAAAAGAGACAGAG ACTTCAGGGGCTGGGGATATTGACCTGGAAAAGAGACAGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377943 chr19:49377943 stopgain 0.001 0 21 hm5C_associated_SNPs_1264 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1264 DeepMRMD:1;iRNA_m5C:1 1265 chr19 14674819 14674819 1 + C T OV 14674819 + 14674799 14674839 41 CCTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCT CCTAACAGAGTACGCGGGGCTCCTTTTCATCTACCTGCTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674819 chr19:14674819 nonsynonymous SNV 0.988 4 21 hm5C_associated_SNPs_1265 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1265 DeepMRMD:1;iRNA_m5C:1 1266 chr14 75746612 75746612 1 + C A OV 75746612 + 75746592 75746632 41 GACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCAC GACCTGGCCGTCTCCAGTGCAAACTTCATTCCCACGGTCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746612 chr14:75746612 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1266 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1266 DeepMRMD:1;iRNA_m5C:1 1267 chr10 89487114 89487114 1 + C A OV 89487114 + 89487094 89487134 41 AAGACACGGCTGGAAGGGTGCAGCAAGTTTGTCCTGGCACA AAGACACGGCTGGAAGGGTGAAGCAAGTTTGTCCTGGCACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89487114 chr10:89487114 stopgain 0.996 0 21 hm5C_associated_SNPs_1267 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1267 DeepMRMD:1;iRNA_m5C:1 1268 chr1 3328714 3328714 1 + C T OV 3328714 + 3328694 3328734 41 GGCCAGCCCAAGTTTGGGGGCGGCTTGGCGCCCCCGGGGGC GGCCAGCCCAAGTTTGGGGGTGGCTTGGCGCCCCCGGGGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328714 chr1:3328714 synonymous SNV . 0 21 hm5C_associated_SNPs_1268 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_1268 DeepMRMD:1;iRNA_m5C:1 1269 chr1 53236907 53236907 1 + C T OV 53236907 + 53236887 53236927 41 ACAAATGGATCCAGCAGAATCTCCAGTGCCTGGTGCTGAAT ACAAATGGATCCAGCAGAATTTCCAGTGCCTGGTGCTGAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control ZYG11B ENSG00000162378 CDS Human protein_coding chr1:53236907 chr1:53236907 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1269 0 0 0 3 0 Ribosome 1 0 1 1 hm5C_site_1269 DeepMRMD:1;iRNA_m5C:1 1270 chr17 73486373 73486373 1 + C G OV 73486373 + 73486353 73486393 41 AGTCCTCTGGGTTCTGGCAACTGCCTGTGGAGAGGCCCGTG AGTCCTCTGGGTTCTGGCAAGTGCCTGTGGAGAGGCCCGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73486373 chr17:73486373 nonsynonymous SNV 0.962 1 21 hm5C_associated_SNPs_1270 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1270 DeepMRMD:1;iRNA_m5C:1 1271 chr3 61975349 61975349 1 + C T OV 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGTCAGCTGTGGGGGCTGTCACCAGTCTCCTATTGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975349 nonsynonymous SNV 0.407 1 21 hm5C_associated_SNPs_1271 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1271 DeepMRMD:1;iRNA_m5C:1 1272 chr17 35413929 35413929 1 + C G OV 35413929 + 35413909 35413949 41 TGTACCGCTCTCTTTTTGGCCAGCTCCACCCTCCCGACGAA TGTACCGCTCTCTTTTTGGCGAGCTCCACCCTCCCGACGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AATF ENSG00000108270 CDS Human other chr17:35413929 chr17:35413929 nonsynonymous SNV 0.858 0 21 hm5C_associated_SNPs_1272 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1272 DeepMRMD:1;iRNA_m5C:1 1273 chr1 65871792 65871792 1 + C T OV 65871792 + 65871772 65871812 41 TGCCTGGGGGCCAGAACGAACGTGGGAAAGGATCAAGTAAT TGCCTGGGGGCCAGAACGAATGTGGGAAAGGATCAAGTAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871792 chr1:65871792 nonsynonymous SNV 0.571 4 21 hm5C_associated_SNPs_1273 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1273 DeepMRMD:1;iRNA_m5C:1 1274 chr1 82372824 82372824 1 + C G OV 82372824 + 82372804 82372844 41 TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGT TTGAGAGCGCTAACTATGGTGGGACGGATGACAAGATTTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82372824 chr1:82372824 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1274 0 0 1 0 1 cytosol 1 0 1 1 hm5C_site_1274 DeepMRMD:1;iRNA_m5C:1 1275 chr6 31602076 31602076 1 + C A OV 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGATACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602076 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1275 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1275 DeepMRMD:1;iRNA_m5C:1 1276 chr7 76112193 76112193 1 + C T PAAD 76112193 + 76112173 76112213 41 GAACTGGCCCCGTGTCAGGCCGCTACCGCCACTCCATGACC GAACTGGCCCCGTGTCAGGCTGCTACCGCCACTCCATGACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76112193 chr7:76112193 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1276 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1276 DeepMRMD:1;iRNA_m5C:1 1277 chr17 7750213 7750213 1 + C T PAAD 7750213 + 7750193 7750233 41 ACCACCACCACCACCACCACCACCCCTGCCTGGCCTGGCTA ACCACCACCACCACCACCACTACCCCTGCCTGGCCTGGCTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750213 chr17:7750213 nonsynonymous SNV 0.923 2 21 hm5C_associated_SNPs_1277 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1277 DeepMRMD:1;iRNA_m5C:1 1278 chr3 186302256 186302256 1 + C T PAAD 186302256 + 186302236 186302276 41 TAAGATCACCAGGCCAGGAGCGAAGCTATGGAAGAAAGGGG TAAGATCACCAGGCCAGGAGTGAAGCTATGGAAGAAAGGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302256 chr3:186302256 nonsynonymous SNV 0.995 1 21 hm5C_associated_SNPs_1278 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1278 DeepMRMD:1;iRNA_m5C:1 1279 chr4 20568888 20568888 1 + C A PAAD 20568888 + 20568868 20568908 41 TTTGAATTAATTTTCAGGTCCTGTGGATGTCAATATTCTAG TTTGAATTAATTTTCAGGTCATGTGGATGTCAATATTCTAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568888 chr4:20568888 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_1279 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_1279 DeepMRMD:1;iRNA_m5C:1 1280 chr14 24567497 24567497 1 + C T PAAD 24567497 + 24567477 24567517 41 CTTCTCAGCGGGACACGGTACAACTCCCGCCTGGTGGGGCC CTTCTCAGCGGGACACGGTATAACTCCCGCCTGGTGGGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24567497 chr14:24567497 stopgain 0.741 0 21 hm5C_associated_SNPs_1280 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1280 DeepMRMD:1;iRNA_m5C:1 1281 chr17 48185696 48185696 1 + C T PAAD 48185696 + 48185676 48185716 41 TCCGCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGAGT TCCGCAGAATGCCATGAGGGTGACTGTGGAAAGCCATGAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185696 chr17:48185696 nonsynonymous SNV 0.987 4 21 hm5C_associated_SNPs_1281 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1281 DeepMRMD:1;iRNA_m5C:1 1282 chr19 971939 971939 1 + C T PAAD 971939 + 971919 971959 41 GCTCCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAGCAG GCTCCCAACAAAGGAGGCGGTGGCGGCGGCGGCAGCAGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3A ENSG00000116017 CDS Human protein_coding chr19:971939 chr19:971939 synonymous SNV . 0 21 hm5C_associated_SNPs_1282 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1282 DeepMRMD:1;iRNA_m5C:1 1283 chr9 135942552 135942552 1 + C T PAAD 135942552 + 135942532 135942572 41 AAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGT AAGGTTACTGATCCCCGAGCTCTGACGCTGGCCTATAAGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942552 chr9:135942552 synonymous SNV . 0 21 hm5C_associated_SNPs_1283 0 0 1 0 1 exosome 1 0 1 1 hm5C_site_1283 DeepMRMD:1;iRNA_m5C:1 1284 chr4 77661164 77661164 1 + C T PAAD 77661164 + 77661144 77661184 41 TCAGGCTCAGGCCTGGCAAGCGGGTGAAGACAAGAGATCTT TCAGGCTCAGGCCTGGCAAGTGGGTGAAGACAAGAGATCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661164 chr4:77661164 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_1284 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_1284 DeepMRMD:1;iRNA_m5C:1 1285 chr17 33900679 33900679 1 + C T PAAD 33900679 + 33900659 33900699 41 GGAGATGAAATGCAGCGATGCGATGATGAGTGAAGTAGAGC GGAGATGAAATGCAGCGATGTGATGATGAGTGAAGTAGAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD7 ENSG00000207297 ncRNA_exonic Human snoRNA chr17:33900679 chr17:33900679 . . 0 21 hm5C_associated_SNPs_1285 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_1285 DeepMRMD:1;iRNA_m5C:1 1286 chr6 52288769 52288769 1 + C T PAAD 52288769 + 52288749 52288789 41 AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCT AGCCTTCCACAGAAGTCAGATGCTGAGCTACAGGAACGGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288769 chr6:52288769 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_1286 1 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1286 DeepMRMD:1;iRNA_m5C:1 not specified not specified 1287 chr14 103805668 103805668 1 + C T PAAD 103805668 + 103805648 103805688 41 AATACAGGCGCCATTTCCTACGAGTAAGCAAAGTGCTCTGG AATACAGGCGCCATTTCCTATGAGTAAGCAAAGTGCTCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805668 chr14:103805668 stopgain 0.987 1 21 hm5C_associated_SNPs_1287 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1287 DeepMRMD:1;iRNA_m5C:1 1288 chr11 46387834 46387834 1 + C T PAAD 46387834 + 46387814 46387854 41 CTTTCTTTAGGAGACATTTCCGGGGGAAGGTGCCAGGCCCT CTTTCTTTAGGAGACATTTCTGGGGGAAGGTGCCAGGCCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46387834 chr11:46387834 nonsynonymous SNV 0.363 1 21 hm5C_associated_SNPs_1288 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1288 DeepMRMD:1;iRNA_m5C:1 1289 chr14 105179914 105179914 1 + C T PAAD 105179914 + 105179894 105179934 41 CGGGGGCAGCAAGGCAGCCTCCATGGATCCCCCAAGAGCCA CGGGGGCAGCAAGGCAGCCTTCATGGATCCCCCAAGAGCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105179914 chr14:105179914 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_1289 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1289 DeepMRMD:1;iRNA_m5C:1 1290 chr7 43590119 43590119 1 + C T PAAD 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAGTGCATGGTGAAGTGGCGGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590119 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1290 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1290 DeepMRMD:1;iRNA_m5C:1 1291 chr17 48545740 48545740 1 + C T PAAD 48545740 + 48545720 48545760 41 AAGATGAAGAGGTTGACCAGCGGGGAGAGCAACCCCCGGGG AAGATGAAGAGGTTGACCAGTGGGGAGAGCAACCCCCGGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHAD ENSG00000136457 CDS Human protein_coding chr17:48545740 chr17:48545740 synonymous SNV . 0 21 hm5C_associated_SNPs_1291 0 0 1 0 1 nucleus 1 0 1 1 hm5C_site_1291 DeepMRMD:1;iRNA_m5C:1 1292 chr7 44747498 44747498 1 + C T PAAD 44747498 + 44747478 44747518 41 GTATGCCGGCCGGGACCCAGCGGCTGCTCCAGCCACCGGCA GTATGCCGGCCGGGACCCAGTGGCTGCTCCAGCCACCGGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44747498 chr7:44747498 nonsynonymous SNV 0.983 3 21 hm5C_associated_SNPs_1292 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1292 DeepMRMD:1;iRNA_m5C:1 1293 chr19 13054419 13054419 1 + C T PAAD 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGTAACGAGACGTGGGGCGTAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054419 synonymous SNV . 0 21 hm5C_associated_SNPs_1293 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1293 DeepMRMD:1;iRNA_m5C:1 1294 chr1 236347193 236347193 1 + C A PAAD 236347193 + 236347173 236347213 41 TTTCTTCCGAGTTAGAAATCCTACAAAGGACCTTGTAAGTA TTTCTTCCGAGTTAGAAATCATACAAAGGACCTTGTAAGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPR137B ENSG00000077585 CDS Human protein_coding chr1:236347193 chr1:236347193 nonsynonymous SNV 0.602 3 21 hm5C_associated_SNPs_1294 0 0 0 1 1 Ribosome 1 0 1 1 hm5C_site_1294 DeepMRMD:1;iRNA_m5C:1 1295 chr5 121786604 121786604 1 + C T PAAD 121786604 + 121786584 121786624 41 ACTCCAACAACTCTGAGGACCCCAAGACTACCCCAGTGAGG ACTCCAACAACTCTGAGGACTCCAAGACTACCCCAGTGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786604 chr5:121786604 nonsynonymous SNV 0.981 1 21 hm5C_associated_SNPs_1295 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1295 DeepMRMD:1;iRNA_m5C:1 1296 chr2 158157419 158157419 1 + C G PAAD 158157419 + 158157399 158157439 41 ACCTCACCCAGCAAAGGGAGCTGCGAAAGAAACTGAAGTGC ACCTCACCCAGCAAAGGGAGGTGCGAAAGAAACTGAAGTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158157419 chr2:158157419 nonsynonymous SNV 0.974 3 21 hm5C_associated_SNPs_1296 0 0 0 0 1 Exosome 1 0 1 1 hm5C_site_1296 DeepMRMD:1;iRNA_m5C:1 1297 chr1 154207157 154207157 1 + C A PAAD 154207157 + 154207137 154207177 41 ATGAGGAAGGCAAAGAAAATCGAGACCGGGACAGAGACTAT ATGAGGAAGGCAAAGAAAATAGAGACCGGGACAGAGACTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207157 chr1:154207157 synonymous SNV . 0 21 hm5C_associated_SNPs_1297 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1297 DeepMRMD:1;iRNA_m5C:1 1298 chr15 39876541 39876541 1 + C T PAAD 39876541 + 39876521 39876561 41 GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG GGCCAATGAGCTGAGGCGGCTTCCCCTATGCTATCACAACG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876541 chr15:39876541 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1298 0 0 1 0 2 cytosol 1 0 1 1 hm5C_site_1298 DeepMRMD:1;iRNA_m5C:1 1299 chr2 231931688 231931688 1 + C A PCPG 231931688 + 231931668 231931708 41 TGCCTGAAGGAGAAAAAAAACCAATTGACCAGAGATTGGAA TGCCTGAAGGAGAAAAAAAAACAATTGACCAGAGATTGGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931688 chr2:231931688 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1299 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1299 DeepMRMD:1;iRNA_m5C:1 1300 chr15 92459355 92459355 1 + C T PRAD 92459355 + 92459335 92459375 41 ACTTCGGGGCACGCGGGCACCGGCCGCGCCTGATCGGCTGC ACTTCGGGGCACGCGGGCACTGGCCGCGCCTGATCGGCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92459355 chr15:92459355 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_1300 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_1300 DeepMRMD:1;iRNA_m5C:1 1301 chr19 17688792 17688792 1 + C T PRAD 17688792 + 17688772 17688812 41 GAACACCAGCCAGGTGGAGGCGCTGGGGATCCAGATGCTGC GAACACCAGCCAGGTGGAGGTGCTGGGGATCCAGATGCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17688792 chr19:17688792 nonsynonymous SNV 0.726 2 21 hm5C_associated_SNPs_1301 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1301 DeepMRMD:1;iRNA_m5C:1 1302 chr1 156105740 156105740 1 + C T PRAD 156105740 + 156105720 156105760 41 ACCTGGAGGACTCACTGGCCCGTGAGCGGGACACCAGCCGG ACCTGGAGGACTCACTGGCCTGTGAGCGGGACACCAGCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105740 chr1:156105740 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_1302 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1302 DeepMRMD:1;iRNA_m5C:1 1303 chr17 7612511 7612511 1 + C T PRAD 7612511 + 7612491 7612531 41 CCACCAGCAATGCAACCTCCCGGGGTGCTGAAGGCCCCCTG CCACCAGCAATGCAACCTCCTGGGGTGCTGAAGGCCCCCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7612511 chr17:7612511 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1303 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1303 DeepMRMD:1;iRNA_m5C:1 1304 chr16 72142736 72142736 1 + C A PRAD 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCGCACAGGGATGCACTGCCACTTGCACCCCACCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142736 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1304 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1304 DeepMRMD:1;iRNA_m5C:1 1305 chr17 72306164 72306164 1 + C T PRAD 72306164 + 72306144 72306184 41 CCCCTTCAATAGGTGTGTGACGAGGCCCTCTTCTGCCTCCG CCCCTTCAATAGGTGTGTGATGAGGCCCTCTTCTGCCTCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306164 chr17:72306164 synonymous SNV . 0 21 hm5C_associated_SNPs_1305 0 0 0 2 1 exosome 1 0 1 1 hm5C_site_1305 DeepMRMD:1;iRNA_m5C:1 1306 chr18 19348668 19348668 1 + C T PRAD 19348668 + 19348648 19348688 41 AGAGTGGTGCGAGGAGTGGACTGGCAGTGGGAAGATCAAGA AGAGTGGTGCGAGGAGTGGATTGGCAGTGGGAAGATCAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIB1 ENSG00000101752 CDS Human protein_coding chr18:19348668 chr18:19348668 synonymous SNV . 0 21 hm5C_associated_SNPs_1306 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1306 DeepMRMD:1;iRNA_m5C:1 1307 chr17 80895147 80895147 1 + C T PRAD 80895147 + 80895127 80895167 41 AGTGTGTGTTGTTCTTCCAGCCACCCCTTTGCTGTGAAGTT AGTGTGTGTTGTTCTTCCAGTCACCCCTTTGCTGTGAAGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBCD ENSG00000141556 CDS Human protein_coding chr17:80895147 chr17:80895147 synonymous SNV . 0 21 hm5C_associated_SNPs_1307 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1307 DeepMRMD:1;iRNA_m5C:1 1308 chr22 38352843 38352843 1 + C T PRAD 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGCTGAAGAGGTCAGTATTCAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352843 synonymous SNV . 0 21 hm5C_associated_SNPs_1308 0 0 1 0 3 Ribosome 1 0 1 1 hm5C_site_1308 DeepMRMD:1;iRNA_m5C:1 1309 chr11 581559 581559 1 + C T PRAD 581559 + 581539 581579 41 TGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCG TGTGGCCCGGAGCCCAGGGCTGGATGGACACCCACAGGTCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581559 chr11:581559 nonsynonymous SNV 0.019 2 21 hm5C_associated_SNPs_1309 0 0 1 0 3 Nucleus 1 0 1 1 hm5C_site_1309 DeepMRMD:1;iRNA_m5C:1 1310 chr6 30593484 30593484 1 + C T PRAD 30593484 + 30593464 30593504 41 CATCTCCAAGAAGAGAGTGGCCCCCCACCTGAGTCAATGCC CATCTCCAAGAAGAGAGTGGTCCCCCACCTGAGTCAATGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS18B ENSG00000204568 CDS Human protein_coding chr6:30593484 chr6:30593484 synonymous SNV . 0 21 hm5C_associated_SNPs_1310 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1310 DeepMRMD:1;iRNA_m5C:1 1311 chr15 75941791 75941791 1 + C T PRAD 75941791 + 75941771 75941811 41 GAGGAGGATGATGATGATGACTGGGATGACTGGGACGACGG GAGGAGGATGATGATGATGATTGGGATGACTGGGACGACGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNX33 ENSG00000173548 CDS Human protein_coding chr15:75941791 chr15:75941791 synonymous SNV . 0 21 hm5C_associated_SNPs_1311 0 0 0 0 0 membrane 1 0 1 1 hm5C_site_1311 DeepMRMD:1;iRNA_m5C:1 1312 chr7 101845118 101845118 1 + C T PRAD 101845118 + 101845098 101845138 41 GCCAAGGCCGAAGAAACGGGCGGCGGGAAAGAGAAGGGCAG GCCAAGGCCGAAGAAACGGGTGGCGGGAAAGAGAAGGGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101845118 chr7:101845118 synonymous SNV . 0 21 hm5C_associated_SNPs_1312 0 0 1 0 0 Exosome 1 0 1 1 hm5C_site_1312 DeepMRMD:1;iRNA_m5C:1 1313 chr12 56527593 56527593 1 + C T PRAD 56527593 + 56527573 56527613 41 GTGGAATTGGGGAGTCTCCTCTCGACCAGATCCCCCGTCAG GTGGAATTGGGGAGTCTCCTTTCGACCAGATCCCCCGTCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527593 chr12:56527593 nonsynonymous SNV 0.862 3 21 hm5C_associated_SNPs_1313 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1313 DeepMRMD:1;iRNA_m5C:1 1314 chr5 74069862 74069862 1 + C T PRAD 74069862 + 74069842 74069882 41 GAGCGAATTGGGCCTTGTGACACAAGGAGGCAAAGTTATTT GAGCGAATTGGGCCTTGTGATACAAGGAGGCAAAGTTATTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NSA2 ENSG00000164346 CDS Human protein_coding chr5:74069862 chr5:74069862 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_1314 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1314 DeepMRMD:1;iRNA_m5C:1 1315 chr11 107968473 107968473 1 + C T PRAD 107968473 + 107968453 107968493 41 TTCTCAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA TTCTCAGTGAACCAGGAGTTTAGTTTAATGTAAGCTCGTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968473 chr11:107968473 synonymous SNV . 0 21 hm5C_associated_SNPs_1315 0 0 1 2 1 Ribosome 1 0 1 1 hm5C_site_1315 DeepMRMD:1;iRNA_m5C:1 1316 chr5 90083965 90083965 1 + C T PRAD 90083965 + 90083945 90083985 41 GACATTGCAGACCCAGTGAGCGGGTTGTTCTATTTTGGAGA GACATTGCAGACCCAGTGAGTGGGTTGTTCTATTTTGGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ADGRV1 ENSG00000164199 CDS Human protein_coding chr5:90083965 chr5:90083965 synonymous SNV . 0 21 hm5C_associated_SNPs_1316 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1316 DeepMRMD:1;iRNA_m5C:1 1317 chr1 110561676 110561676 1 + C T READ 110561676 + 110561656 110561696 41 CTCTCTTACCTTTCCAGGGTCGTCTACTCAATTTGAGCTGC CTCTCTTACCTTTCCAGGGTTGTCTACTCAATTTGAGCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110561676 chr1:110561676 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_1317 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1317 DeepMRMD:1;iRNA_m5C:1 1318 chr3 184104655 184104655 1 + C T READ 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACGAACGGTGATCTGTGACCTGGTGGTGTGCCCACCGCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104655 nonsynonymous SNV 0.768 4 21 hm5C_associated_SNPs_1318 0 0 1 0 2 nucleus 1 0 1 1 hm5C_site_1318 DeepMRMD:1;iRNA_m5C:1 1319 chr16 57144699 57144699 1 + C T READ 57144699 + 57144679 57144719 41 GCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTG GCCCCAGCAGCGGGGGCAGCTCCCATGGGCCCCCAGTATTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144699 chr16:57144699 synonymous SNV . 0 21 hm5C_associated_SNPs_1319 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1319 DeepMRMD:1;iRNA_m5C:1 1320 chr5 34949743 34949743 1 + C T READ 34949743 + 34949723 34949763 41 GAGAGAAGAGATGGAGAGAGCGAGCACAAATGTGCCAAAAT GAGAGAAGAGATGGAGAGAGTGAGCACAAATGTGCCAAAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34949743 chr5:34949743 synonymous SNV . 0 21 hm5C_associated_SNPs_1320 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1320 DeepMRMD:1;iRNA_m5C:1 1321 chr17 39978062 39978062 1 + C T READ 39978062 + 39978042 39978082 41 CAAGGATGGCGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT CAAGGATGGCGAGGTCCCTCTGGAGGAGGTGGGTGAAGGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39978062 chr17:39978062 nonsynonymous SNV 0.256 0 21 hm5C_associated_SNPs_1321 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1321 DeepMRMD:1;iRNA_m5C:1 1322 chr18 77728106 77728106 1 + C T READ 77728106 + 77728086 77728126 41 TACTGGAAGAAATGGGAAATCGCATTGAGGACTTACAGAAG TACTGGAAGAAATGGGAAATTGCATTGAGGACTTACAGAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 CDS Human protein_coding chr18:77728106 chr18:77728106 nonsynonymous SNV 0.647 2 21 hm5C_associated_SNPs_1322 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1322 DeepMRMD:1;iRNA_m5C:1 1323 chr17 45757956 45757956 1 + C T READ 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGGTGGAGATCGAAGACTAACAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757956 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1323 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1323 DeepMRMD:1;iRNA_m5C:1 1324 chr5 141524180 141524180 1 + C T READ 141524180 + 141524160 141524200 41 TTATCAATTATGCAAAAGTTCGGAAGATGCCAGAAACTTTC TTATCAATTATGCAAAAGTTTGGAAGATGCCAGAAACTTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control NDFIP1 ENSG00000131507 CDS Human protein_coding chr5:141524180 chr5:141524180 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1324 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1324 DeepMRMD:1;iRNA_m5C:1 1325 chr2 11312065 11312065 1 + C A READ 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCTATGTACTTTAATCAGCGCGGCCAGTAAGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312065 nonsynonymous SNV 0.413 1 21 hm5C_associated_SNPs_1325 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_1325 DeepMRMD:1;iRNA_m5C:1 1326 chr17 20163528 20163528 1 + C T READ 20163528 + 20163508 20163548 41 GGAAAGAAAAGACCCTCTGGCAGCCTTGGCCCGGGAATACG GGAAAGAAAAGACCCTCTGGTAGCCTTGGCCCGGGAATACG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20163528 chr17:20163528 nonsynonymous SNV 0.986 1 21 hm5C_associated_SNPs_1326 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1326 DeepMRMD:1;iRNA_m5C:1 1327 chr22 43558927 43558927 1 + C T READ 43558927 + 43558907 43558947 41 CCTGGCCTGGCTGGCCTTCACGACCACACTCAACTACTGCG CCTGGCCTGGCTGGCCTTCATGACCACACTCAACTACTGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPO ENSG00000100300 CDS Human protein_coding chr22:43558927 chr22:43558927 nonsynonymous SNV 0.028 2 21 hm5C_associated_SNPs_1327 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1327 DeepMRMD:1;iRNA_m5C:1 1328 chr1 10221247 10221247 1 + C T READ 10221247 + 10221227 10221267 41 AAACATGTTGATAAACGACACGACGTTTTTGCTCGATGAAA AAACATGTTGATAAACGACATGACGTTTTTGCTCGATGAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10221247 chr1:10221247 nonsynonymous SNV 0.922 4 21 hm5C_associated_SNPs_1328 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1328 DeepMRMD:1;iRNA_m5C:1 1329 chr1 949655 949655 1 + C T SARC 949655 + 949635 949675 41 GCAGCAGCACCTACGAGGTACGGCTGACGCAGACCGTGGCC GCAGCAGCACCTACGAGGTATGGCTGACGCAGACCGTGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ISG15 ENSG00000187608 CDS Human protein_coding chr1:949655 chr1:949655 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1329 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1329 DeepMRMD:1;iRNA_m5C:1 1330 chr1 171763629 171763629 1 + C G SARC 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAATGTTTTCTACAGAAGGTTAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763629 nonsynonymous SNV 0.712 0 21 hm5C_associated_SNPs_1330 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1330 DeepMRMD:1;iRNA_m5C:1 1331 chr7 142459862 142459862 1 + C A SARC 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTCTGGCTGGGGCAAAACTGCGAGCTCTGGCGGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459862 nonsynonymous SNV 0.763 5 21 hm5C_associated_SNPs_1331 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1331 DeepMRMD:1;iRNA_m5C:1 1332 chr17 6547819 6547819 1 + G T SARC 6547819 - 6547799 6547839 41 TTCAGCAAGCCTTGGCAGAGCAGCAACAGCAAAATAACACA TTCAGCAAGCCTTGGCAGAGAAGCAACAGCAAAATAACACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED31 ENSG00000108590 CDS Human protein_coding chr17:6547819 chr17:6547819 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1332 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1332 DeepMRMD:1;iRNA_m5C:1 1333 chr16 56362604 56362604 1 + C T SARC 56362604 + 56362584 56362624 41 AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCATGA AGACACCGAGCCCTTCTCTGTAGAGCTGCTTTCTGCCATGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56362604 chr16:56362604 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1333 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1333 DeepMRMD:1;iRNA_m5C:1 1334 chr11 57575904 57575904 1 + C G SARC 57575904 + 57575884 57575924 41 CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC CTCTGCGTCAAGAGAAGGCTGTTTCTGCCATAGCTGACCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575904 chr11:57575904 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1334 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1334 DeepMRMD:1;iRNA_m5C:1 1335 chr2 27900703 27900703 1 + C A SARC 27900703 + 27900683 27900723 41 TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAGG TGTCCCGGAAGAAACTTCACATGAGAACTTTTGAACTGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900703 chr2:27900703 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1335 0 0 1 0 2 nucleoplasm 1 0 1 1 hm5C_site_1335 DeepMRMD:1;iRNA_m5C:1 1336 chr1 186106679 186106679 1 + C T SARC 186106679 + 186106659 186106699 41 TGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATCCAAAA TGGAGAGCCTGCAGTGTCACTTGTGGAAAAGGCATCCAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186106679 chr1:186106679 synonymous SNV . 0 21 hm5C_associated_SNPs_1336 0 0 0 0 1 nucleus 1 0 1 1 hm5C_site_1336 DeepMRMD:1;iRNA_m5C:1 1337 chr1 86048585 86048585 1 + C T SARC 86048585 + 86048565 86048605 41 GGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGACA GGACTGTGAAGATGCGGTTCTGCTGCGAAGATGGGGAGACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048585 chr1:86048585 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1337 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1337 DeepMRMD:1;iRNA_m5C:1 1338 chr12 94072703 94072703 1 + C A SARC 94072703 + 94072683 94072723 41 AATGCTCAAACCACAGGCCTCCGGAAAACAATGCTCCTGCT AATGCTCAAACCACAGGCCTACGGAAAACAATGCTCCTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRADD ENSG00000169372 CDS Human protein_coding chr12:94072703 chr12:94072703 synonymous SNV . 0 21 hm5C_associated_SNPs_1338 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1338 DeepMRMD:1;iRNA_m5C:1 1339 chr12 95693942 95693942 1 + C T SARC 95693942 + 95693922 95693962 41 TCTTTTTTTTTATTTGAAGCCGTGTTGAAATCCTTGTCTCC TCTTTTTTTTTATTTGAAGCTGTGTTGAAATCCTTGTCTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95693942 chr12:95693942 synonymous SNV . 0 21 hm5C_associated_SNPs_1339 0 0 1 3 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1339 DeepMRMD:1;iRNA_m5C:1 1340 chr2 10925152 10925152 1 + G T SARC 10925152 - 10925132 10925172 41 GTCATTTTTCCCTAAGGGAGCTCTCTTTTGGGCGTGGCTCC GTCATTTTTCCCTAAGGGAGATCTCTTTTGGGCGTGGCTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PDIA6 ENSG00000143870 CDS Human protein_coding chr2:10925152 chr2:10925152 nonsynonymous SNV 0.735 3 21 hm5C_associated_SNPs_1340 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1340 DeepMRMD:1;iRNA_m5C:1 1341 chr7 142458486 142458486 1 + C T SARC 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCTTGAATTCTGGCTACCACTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458486 synonymous SNV . 0 21 hm5C_associated_SNPs_1341 1 0 0 0 3 Cytosol 1 0 1 1 hm5C_site_1341 DeepMRMD:1;iRNA_m5C:1 Hereditary pancreatitis Hereditary pancreatitis 1342 chr9 4662858 4662858 1 + C T SARC 4662858 + 4662838 4662878 41 TGCAGGAGCGACAGCTGGGCCGGGCGCGAGGTGCTGATGAA TGCAGGAGCGACAGCTGGGCTGGGCGCGAGGTGCTGATGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PLPP6 ENSG00000205808 CDS Human protein_coding chr9:4662858 chr9:4662858 synonymous SNV . 0 21 hm5C_associated_SNPs_1342 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1342 DeepMRMD:1;iRNA_m5C:1 1343 chr7 142459626 142459626 1 + C T SARC 142459626 + 142459606 142459646 41 TGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGA TGCCTGCCCTGCCCATCAGCTGCATCCAGGTGAGACTGGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459626 chr7:142459626 nonsynonymous SNV 0.585 3 21 hm5C_associated_SNPs_1343 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1343 DeepMRMD:1;iRNA_m5C:1 1344 chr12 73012771 73012771 1 + C T SKCM 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCCGAGCTCTTTATTCTCTAGATAAATTACTGGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012771 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1344 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1344 DeepMRMD:1;iRNA_m5C:1 1345 chr12 62797974 62797974 1 + C T SKCM 62797974 + 62797954 62797994 41 ACATCCTTTGTTTTGACAGTCCAAAGCAGCATATGTACTCT ACATCCTTTGTTTTGACAGTTCAAAGCAGCATATGTACTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62797974 chr12:62797974 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1345 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_1345 DeepMRMD:1;iRNA_m5C:1 1346 chr1 22336293 22336293 1 + C T SKCM 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGGCTGCAACTTTATCTGGAAGCCCACGGTGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336293 synonymous SNV . 0 21 hm5C_associated_SNPs_1346 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1346 DeepMRMD:1;iRNA_m5C:1 1347 chr7 142459745 142459745 1 + C T SKCM 142459745 + 142459725 142459765 41 AGGAAGACTCTGAACAATGACATCATGTTAATCAAGCTCTC AGGAAGACTCTGAACAATGATATCATGTTAATCAAGCTCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459745 chr7:142459745 synonymous SNV . 0 21 hm5C_associated_SNPs_1347 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1347 DeepMRMD:1;iRNA_m5C:1 1348 chr7 142457353 142457353 1 + C T SKCM 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATGAATCCACTCCTGATTCTTACCTTTGTGGCAGCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457353 synonymous SNV . 0 21 hm5C_associated_SNPs_1348 0 0 0 1 1 Cytosol 1 0 1 1 hm5C_site_1348 DeepMRMD:1;iRNA_m5C:1 1349 chr5 14482854 14482854 1 + C T SKCM 14482854 + 14482834 14482874 41 AAAGAAGGGCTTCTCCATGCCGGGATTCCTGTTTAAGAACA AAAGAAGGGCTTCTCCATGCTGGGATTCCTGTTTAAGAACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14482854 chr5:14482854 nonsynonymous SNV 0.981 3 21 hm5C_associated_SNPs_1349 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1349 DeepMRMD:1;iRNA_m5C:1 1350 chr2 70096880 70096880 1 + C T SKCM 70096880 + 70096860 70096900 41 CGTTGGACAGGTTTTAACTTCGGCTTCGACCTACTTGTAAC CGTTGGACAGGTTTTAACTTTGGCTTCGACCTACTTGTAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096880 chr2:70096880 synonymous SNV . 0 21 hm5C_associated_SNPs_1350 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1350 DeepMRMD:1;iRNA_m5C:1 1351 chr6 76558070 76558070 1 + C T SKCM 76558070 + 76558050 76558090 41 TGTCTTCTTGTTTTGTAGTACCTTAAGGCAGGTTCTATGAA TGTCTTCTTGTTTTGTAGTATCTTAAGGCAGGTTCTATGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYO6 ENSG00000196586 CDS Human protein_coding chr6:76558070 chr6:76558070 synonymous SNV . 0 21 hm5C_associated_SNPs_1351 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1351 DeepMRMD:1;iRNA_m5C:1 1352 chr12 123102893 123102893 1 + C T SKCM 123102893 + 123102873 123102913 41 TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGCGTGG TGGACTTGTTTTCACAGGTTTCCTACTTCAGCAAAGCGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123102893 chr12:123102893 nonsynonymous SNV 0.733 2 21 hm5C_associated_SNPs_1352 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1352 DeepMRMD:1;iRNA_m5C:1 1353 chr1 32620246 32620246 1 + C T SKCM 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATGTTCTAAACCCTGAAGAAATGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620246 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1353 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1353 DeepMRMD:1;iRNA_m5C:1 1354 chr11 67052452 67052452 1 + C T SKCM 67052452 + 67052432 67052472 41 GGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG GGCGGGGCGAGGGCGAGGCCTCGGTAAGGAGCCCGTGCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052452 chr11:67052452 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_1354 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1354 DeepMRMD:1;iRNA_m5C:1 1355 chr6 7594068 7594068 1 + C A SKCM 7594068 + 7594048 7594088 41 TTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCATA TTGAGGAAAATGGGCTATACAAAAGAAGAAGAGGTACCATA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594068 chr6:7594068 synonymous SNV . 0 21 hm5C_associated_SNPs_1355 0 0 1 2 1 Ribosome 1 0 1 1 hm5C_site_1355 DeepMRMD:1;iRNA_m5C:1 1356 chr19 49993749 49993749 1 + C T SKCM 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCTTCCGCAAGCGGATGAACACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993749 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1356 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1356 DeepMRMD:1;iRNA_m5C:1 1357 chr7 142458473 142458473 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAATTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458473 synonymous SNV . 0 21 hm5C_associated_SNPs_1357 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1357 DeepMRMD:1;iRNA_m5C:1 1358 chr7 142458472 142458472 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458472 nonsynonymous SNV 0.950 5 21 hm5C_associated_SNPs_1358 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1358 DeepMRMD:1;iRNA_m5C:1 1359 chr16 29842365 29842365 1 + C T SKCM 29842365 + 29842345 29842385 41 GGCTGGCCCAGGACCCCTTCCCCCTGTACCCAGGGGAGGTG GGCTGGCCCAGGACCCCTTCTCCCTGTACCCAGGGGAGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29842365 chr16:29842365 nonsynonymous SNV 0.985 4 21 hm5C_associated_SNPs_1359 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1359 DeepMRMD:1;iRNA_m5C:1 1360 chr7 22896303 22896303 1 + C T SKCM 22896303 + 22896283 22896323 41 ATTAAAGGATTTACCTGAGGCCAAATTGGTATGCAGGAATT ATTAAAGGATTTACCTGAGGTCAAATTGGTATGCAGGAATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896303 chr7:22896303 . . 0 21 hm5C_associated_SNPs_1360 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_1360 DeepMRMD:1;iRNA_m5C:1 1361 chr5 179150759 179150759 1 + C T SKCM 179150759 + 179150739 179150779 41 CTTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA CTTCCTGTGTTCCTGGTTATTCTCTTCTGCTGTTCTGGAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150759 chr5:179150759 synonymous SNV . 0 21 hm5C_associated_SNPs_1361 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1361 DeepMRMD:1;iRNA_m5C:1 1362 chr2 29344282 29344282 1 + C T SKCM 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TAGAGGACCTTCCAGATTTTTCATTAGAAGGAAATCCTTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344282 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_1362 0 0 1 1 0 nucleus 1 0 1 1 hm5C_site_1362 DeepMRMD:1;iRNA_m5C:1 1363 chr11 57373926 57373926 1 + C T SKCM 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAAGAAAACCAGAATGGAACTCTTTCACTTCAAAAACTCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373926 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_1363 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1363 DeepMRMD:1;iRNA_m5C:1 1364 chr12 58001367 58001367 1 + C T SKCM 58001367 + 58001347 58001387 41 AGTACGGCACCATTGTCATCCAGTACGTCTTCCCGCCCGGT AGTACGGCACCATTGTCATCTAGTACGTCTTCCCGCCCGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DTX3 ENSG00000178498 CDS Human protein_coding chr12:58001367 chr12:58001367 stopgain 1.000 0 21 hm5C_associated_SNPs_1364 0 0 1 0 0 exosome 1 0 1 1 hm5C_site_1364 DeepMRMD:1;iRNA_m5C:1 1365 chr11 65481133 65481133 1 + C T SKCM 65481133 + 65481113 65481153 41 CAGCCCCGGCCTCGGTTTTTCCCCAGGTGAGTTCCCCAAAC CAGCCCCGGCCTCGGTTTTTTCCCAGGTGAGTTCCCCAAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KAT5 ENSG00000172977 CDS Human protein_coding chr11:65481133 chr11:65481133 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_1365 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1365 DeepMRMD:1;iRNA_m5C:1 1366 chr9 135946961 135946961 1 + C T SKCM 135946961 + 135946941 135946981 41 GGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACT GGGTGACTCCGGCGCCCCCCTCGTGCCGCCCACGGGTGACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946961 chr9:135946961 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_1366 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1366 DeepMRMD:1;iRNA_m5C:1 1367 chr16 29811295 29811295 1 + C T SKCM 29811295 + 29811275 29811315 41 CCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGA CCACCAGAGGCAAAGAGAGCTCGAGGCCCTGAGGAAGAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811295 chr16:29811295 synonymous SNV . 0 21 hm5C_associated_SNPs_1367 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1367 DeepMRMD:1;iRNA_m5C:1 1368 chr5 156816259 156816259 1 + C T SKCM 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCTATGTTCGAGGTCATCCTGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816259 synonymous SNV . 0 21 hm5C_associated_SNPs_1368 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1368 DeepMRMD:1;iRNA_m5C:1 1369 chr6 107100110 107100110 1 + C T SKCM 107100110 + 107100090 107100130 41 AGGATCAGATACAGGAGGATCGACCAGAAATCCTGCTGCCC AGGATCAGATACAGGAGGATTGACCAGAAATCCTGCTGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107100110 chr6:107100110 nonsynonymous SNV 0.992 5 21 hm5C_associated_SNPs_1369 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1369 DeepMRMD:1;iRNA_m5C:1 1370 chr7 142460771 142460771 1 + C T SKCM 142460771 + 142460751 142460791 41 ACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC ACAGCTCCAAGGAGTTGTCTTCTGGGGTGATGGCTGTGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460771 chr7:142460771 nonsynonymous SNV 0.233 5 21 hm5C_associated_SNPs_1370 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1370 DeepMRMD:1;iRNA_m5C:1 1371 chr19 46878977 46878977 1 + C T SKCM 46878977 + 46878957 46878997 41 GGCGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT GGCGACGAGCACAAGCGCTCTGTGGTGGACTCGCTGGACAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46878977 chr19:46878977 synonymous SNV . 0 21 hm5C_associated_SNPs_1371 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1371 DeepMRMD:1;iRNA_m5C:1 1372 chr9 125154756 125154756 1 + C T SKCM 125154756 + 125154736 125154776 41 CAAGACCTGTCCCTACGTTTCCTTCCGTGTGCCGGATGCCA CAAGACCTGTCCCTACGTTTTCTTCCGTGTGCCGGATGCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125154756 chr9:125154756 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1372 0 0 1 0 0 nucleolus 1 0 1 1 hm5C_site_1372 DeepMRMD:1;iRNA_m5C:1 1373 chr4 166405684 166405684 1 + C T SKCM 166405684 + 166405664 166405704 41 ACCCCAATCGGCCACCATGTCGCAAGAATGATGATGACAGC ACCCCAATCGGCCACCATGTTGCAAGAATGATGATGACAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPE ENSG00000109472 CDS Human protein_coding chr4:166405684 chr4:166405684 nonsynonymous SNV 0.921 4 21 hm5C_associated_SNPs_1373 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1373 DeepMRMD:1;iRNA_m5C:1 1374 chr3 47374698 47374698 1 + C T SKCM 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ACGACCGGGAGCAGAGGGGTTCCTACCTGCCTGAGCTGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374698 nonsynonymous SNV 0.991 0 21 hm5C_associated_SNPs_1374 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1374 DeepMRMD:1;iRNA_m5C:1 1375 chr12 46215264 46215264 1 + C T SKCM 46215264 + 46215244 46215284 41 GAGAAGACTGATAGAGACTTCGTTAAGGTAAATCATTTTAA GAGAAGACTGATAGAGACTTTGTTAAGGTAAATCATTTTAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID2 ENSG00000189079 CDS Human protein_coding chr12:46215264 chr12:46215264 synonymous SNV . 0 21 hm5C_associated_SNPs_1375 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1375 DeepMRMD:1;iRNA_m5C:1 1376 chr9 95797848 95797848 1 + C T SKCM 95797848 + 95797828 95797868 41 GGGCCCTGCAGCTTCAGGTCCCTATGGGCGCAGCTGCTCCG GGGCCCTGCAGCTTCAGGTCTCTATGGGCGCAGCTGCTCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGD3 ENSG00000127084 CDS Human protein_coding chr9:95797848 chr9:95797848 nonsynonymous SNV 0.044 1 21 hm5C_associated_SNPs_1376 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1376 DeepMRMD:1;iRNA_m5C:1 1377 chr7 142458565 142458565 1 + C T SKCM 142458565 + 142458545 142458585 41 AGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCCCCGAC AGCAGGCCACTGCTACAAGTTGTAAGTGTGGGGCCCCCGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458565 chr7:142458565 nonsynonymous SNV 0.553 2 21 hm5C_associated_SNPs_1377 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1377 DeepMRMD:1;iRNA_m5C:1 1378 chr11 20077463 20077463 1 + C T SKCM 20077463 + 20077443 20077483 41 CTGGATGAGAAGAGCAGAACCATGAGCCGTTCAGGCTCATT CTGGATGAGAAGAGCAGAACTATGAGCCGTTCAGGCTCATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20077463 chr11:20077463 synonymous SNV . 0 21 hm5C_associated_SNPs_1378 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1378 DeepMRMD:1;iRNA_m5C:1 1379 chr21 48068504 48068504 1 + C T SKCM 48068504 + 48068484 48068524 41 ACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCGGCC ACTGGGATCATCAGTCTCTTTTGTGCACACTATGCGCGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068504 chr21:48068504 synonymous SNV 0.885 0 21 hm5C_associated_SNPs_1379 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1379 DeepMRMD:1;iRNA_m5C:1 1380 chr21 38558073 38558073 1 + C T SKCM 38558073 + 38558053 38558093 41 CTGGATCAGTCCCTTGAAATCAGGCAAATTAAGCTTAAATT CTGGATCAGTCCCTTGAAATTAGGCAAATTAAGCTTAAATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC3 ENSG00000182670 CDS Human protein_coding chr21:38558073 chr21:38558073 synonymous SNV . 0 21 hm5C_associated_SNPs_1380 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1380 DeepMRMD:1;iRNA_m5C:1 1381 chr11 65267924 65267924 1 + C T SKCM 65267924 + 65267904 65267944 41 AGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGA AGACAGCAGCAGACAGGATTTCAGGAACCAGTGTTTGATGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267924 chr11:65267924 . . 0 21 hm5C_associated_SNPs_1381 0 0 1 2 0 unknown 1 0 1 1 hm5C_site_1381 DeepMRMD:1;iRNA_m5C:1 1382 chr2 189458714 189458714 1 + C T SKCM 189458714 + 189458694 189458734 41 GAAGGCACAGTATTTTGTCTCGACCCGTTAGACAGTAGGTG GAAGGCACAGTATTTTGTCTTGACCCGTTAGACAGTAGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458714 chr2:189458714 synonymous SNV . 0 21 hm5C_associated_SNPs_1382 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1382 DeepMRMD:1;iRNA_m5C:1 1383 chr1 162745469 162745469 1 + C T SKCM 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTCTTAAGGAGATAAAGATTATGTCTCGGCTCAAGGACCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745469 synonymous SNV . 0 21 hm5C_associated_SNPs_1383 0 0 0 0 1 nucleolus 1 0 1 1 hm5C_site_1383 DeepMRMD:1;iRNA_m5C:1 1384 chr13 27216450 27216450 1 + C A SKCM 27216450 + 27216430 27216470 41 TTGAGCCCCGGCACTTGTGCCGGGGAGCTCTGCCTGAAGGG TTGAGCCCCGGCACTTGTGCAGGGGAGCTCTGCCTGAAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216450 chr13:27216450 synonymous SNV . 0 21 hm5C_associated_SNPs_1384 0 0 1 0 2 cytosol 1 0 1 1 hm5C_site_1384 DeepMRMD:1;iRNA_m5C:1 1385 chr7 5643510 5643510 1 + C T SKCM 5643510 + 5643490 5643530 41 ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACCG ACAGGGGACTCAGAGCTCTTTCTCATGAAGCTCATCAACCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643510 chr7:5643510 synonymous SNV . 0 21 hm5C_associated_SNPs_1385 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1385 DeepMRMD:1;iRNA_m5C:1 1386 chrX 107842027 107842027 1 + C T SKCM 107842027 + 107842007 107842047 41 CCTATGGGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGG CCTATGGGTCCCCCTGGTTTTGGCCCTCCAGGCCCAGTAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107842027 chrX:107842027 synonymous SNV . 0 21 hm5C_associated_SNPs_1386 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1386 DeepMRMD:1;iRNA_m5C:1 1387 chr7 142459787 142459787 1 + C T SKCM 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTGCAGTAATCAACGCTCGCGTGTCCACCATCTCTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459787 synonymous SNV . 0 21 hm5C_associated_SNPs_1387 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1387 DeepMRMD:1;iRNA_m5C:1 1388 chr1 201966479 201966479 1 + C T SKCM 201966479 + 201966459 201966499 41 CTTCATGCCACCGTCCTTTCCATTTGGAGGAATGGAGAACC CTTCATGCCACCGTCCTTTCTATTTGGAGGAATGGAGAACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966479 chr1:201966479 nonsynonymous SNV 0.989 4 21 hm5C_associated_SNPs_1388 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1388 DeepMRMD:1;iRNA_m5C:1 1389 chr1 155691323 155691323 1 + C T SKCM 155691323 + 155691303 155691343 41 CCTAGGCCAAGCATGGGGATCAGCACGAGGGTCAGCACTAC CCTAGGCCAAGCATGGGGATTAGCACGAGGGTCAGCACTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAP3 ENSG00000132676 CDS Human protein_coding chr1:155691323 chr1:155691323 stopgain 0.958 1 21 hm5C_associated_SNPs_1389 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1389 DeepMRMD:1;iRNA_m5C:1 1390 chr4 141300277 141300277 1 + C T SKCM 141300277 + 141300257 141300297 41 GAATTTTTCTTATTGTAGACCATTCCTCAAGAATTTTGTAT GAATTTTTCTTATTGTAGACTATTCCTCAAGAATTTTGTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCOC ENSG00000153130 CDS Human protein_coding chr4:141300277 chr4:141300277 nonsynonymous SNV 0.807 0 21 hm5C_associated_SNPs_1390 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1390 DeepMRMD:1;iRNA_m5C:1 1391 chr8 48874104 48874104 1 + C T SKCM 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATCTCCTTCTCAGAGACGTAGAGGCGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874104 synonymous SNV . 0 21 hm5C_associated_SNPs_1391 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1391 DeepMRMD:1;iRNA_m5C:1 1392 chr4 146576316 146576316 1 + C T SKCM 146576316 + 146576296 146576336 41 TAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATCTC TAGGTAATTCGTATTTCTGCTCGAAGTGGAGAGGGGATCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMAA ENSG00000151611 CDS Human protein_coding chr4:146576316 chr4:146576316 synonymous SNV . 0 21 hm5C_associated_SNPs_1392 0 0 1 0 1 nucleoplasm 1 0 1 1 hm5C_site_1392 DeepMRMD:1;iRNA_m5C:1 1393 chr11 764334 764334 1 + C T SKCM 764334 + 764314 764354 41 CACCTGGATGAGAAGTCTTTCCGTTGGTTGCACAACGAGGA CACCTGGATGAGAAGTCTTTTCGTTGGTTGCACAACGAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:764334 chr11:764334 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_1393 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1393 DeepMRMD:1;iRNA_m5C:1 1394 chr1 228403514 228403514 1 + C T SKCM 228403514 + 228403494 228403534 41 AACGGCATTGAGAGCAGCATCCGGATGGAGGTCCGGGGTAG AACGGCATTGAGAGCAGCATTCGGATGGAGGTCCGGGGTAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OBSCN ENSG00000154358 CDS Human protein_coding chr1:228403514 chr1:228403514 synonymous SNV . 0 21 hm5C_associated_SNPs_1394 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_1394 DeepMRMD:1;iRNA_m5C:1 1395 chr19 24010418 24010418 1 + C T SKCM 24010418 + 24010398 24010438 41 TGCGCTGTGTAACACAGATTCTCCTCTGCGCTATGTGGACA TGCGCTGTGTAACACAGATTTTCCTCTGCGCTATGTGGACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010418 chr19:24010418 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_1395 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1395 DeepMRMD:1;iRNA_m5C:1 1396 chr19 42373208 42373208 1 + C T SKCM 42373208 + 42373188 42373228 41 TCATGCCCAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCC TCATGCCCAGCCACTTCAGCTGAGGCTCCAAGAGTGTGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373208 chr19:42373208 stopgain 0.999 1 21 hm5C_associated_SNPs_1396 2 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1396 DeepMRMD:1;iRNA_m5C:1 Diamond-Blackfan anemia 1 Diamond-Blackfan anemia 1 1397 chr3 184042684 184042684 1 + C T SKCM 184042684 + 184042664 184042704 41 AGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAAGAG AGGCAGAGGAACGAGGACGCTTGAAGGAAGAGCTGGAAGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042684 chr3:184042684 synonymous SNV . 0 21 hm5C_associated_SNPs_1397 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1397 DeepMRMD:1;iRNA_m5C:1 1398 chr22 31985558 31985558 1 + C T SKCM 31985558 + 31985538 31985578 41 AGTGCAAGAGCAACACGTTTCCACAGGTATGTTGCGCAGCT AGTGCAAGAGCAACACGTTTTCACAGGTATGTTGCGCAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SFI1 ENSG00000198089 CDS Human protein_coding chr22:31985558 chr22:31985558 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_1398 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1398 DeepMRMD:1;iRNA_m5C:1 1399 chr7 142460757 142460757 1 + C T SKCM 142460757 + 142460737 142460777 41 GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG GTGGTCTGCAATGGACAGCTTCAAGGAGTTGTCTCCTGGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460757 chr7:142460757 synonymous SNV . 0 21 hm5C_associated_SNPs_1399 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1399 DeepMRMD:1;iRNA_m5C:1 1400 chr16 1556245 1556245 1 + C T SKCM 1556245 + 1556225 1556265 41 GTTGTGTCTGGCAGGGTGGCCCGAGGCAGGGCCCGGCAGGC GTTGTGTCTGGCAGGGTGGCTCGAGGCAGGGCCCGGCAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1556245 chr16:1556245 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1400 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1400 DeepMRMD:1;iRNA_m5C:1 1401 chr1 55072914 55072914 1 + C T SKCM 55072914 + 55072894 55072934 41 GGACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA GGACTTCGTGATCCTGGCCTTGAGGCGGAAGCCTTGTGACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55072914 chr1:55072914 nonsynonymous SNV 0.922 4 21 hm5C_associated_SNPs_1401 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_1401 DeepMRMD:1;iRNA_m5C:1 1402 chr9 37424932 37424932 1 + C T SKCM 37424932 + 37424912 37424952 41 GCCCACGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAA GCCCACGGCCTGCTCTGCCTTCTCTCCGACCACGTGGACAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424932 chr9:37424932 synonymous SNV . 0 21 hm5C_associated_SNPs_1402 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1402 DeepMRMD:1;iRNA_m5C:1 1403 chr17 27064861 27064861 1 + C T SKCM 27064861 + 27064841 27064881 41 CCCCCGGGGACCTGTGAGGCCAGCCATCCCACCACCACTGT CCCCCGGGGACCTGTGAGGCTAGCCATCCCACCACCACTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064861 chr17:27064861 nonsynonymous SNV 0.150 0 21 hm5C_associated_SNPs_1403 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1403 DeepMRMD:1;iRNA_m5C:1 1404 chr1 180153184 180153184 1 + C T SKCM 180153184 + 180153164 180153204 41 CTGTTTGGAAATTGGCAGATCGGTAAGGCTACGCCTGGTTC CTGTTTGGAAATTGGCAGATTGGTAAGGCTACGCCTGGTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180153184 chr1:180153184 nonsynonymous SNV 0.152 3 21 hm5C_associated_SNPs_1404 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_1404 DeepMRMD:1;iRNA_m5C:1 1405 chr7 142458518 142458518 1 + C T SKCM 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCTCTCATCAACGAACAGTGGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458518 synonymous SNV . 0 21 hm5C_associated_SNPs_1405 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1405 DeepMRMD:1;iRNA_m5C:1 1406 chr16 67671679 67671679 1 + C T SKCM 67671679 + 67671659 67671699 41 AAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGA AAAGAGCCAGATGCTGAGCCTGCAGAGGGAGAGGAAGAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671679 chr16:67671679 synonymous SNV . 0 21 hm5C_associated_SNPs_1406 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1406 DeepMRMD:1;iRNA_m5C:1 1407 chr1 206653240 206653240 1 + C T SKCM 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGACGTCCCCAAGTTCGTCCTCAAAGTGGACCTGCAGGCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653240 nonsynonymous SNV 0.981 2 21 hm5C_associated_SNPs_1407 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1407 DeepMRMD:1;iRNA_m5C:1 1408 chr1 54666050 54666050 1 + C T SKCM 54666050 + 54666030 54666070 41 GCGGAAGTCGGAGCCTCCTCCCCTGGATAGGGTGTACGAGA GCGGAAGTCGGAGCCTCCTCTCCTGGATAGGGTGTACGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54666050 chr1:54666050 nonsynonymous SNV 0.987 0 21 hm5C_associated_SNPs_1408 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1408 DeepMRMD:1;iRNA_m5C:1 1409 chr2 128867287 128867287 1 + C T SKCM 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGATATCCTTGAGGCTCTTCTACTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867287 nonsynonymous SNV 0.188 1 21 hm5C_associated_SNPs_1409 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1409 DeepMRMD:1;iRNA_m5C:1 1410 chr17 54671848 54671848 1 + C T SKCM 54671848 + 54671828 54671868 41 TCGCCCCCCGAGGACCGGCCCGGCGGGGGCGGGGGTGCAGC TCGCCCCCCGAGGACCGGCCTGGCGGGGGCGGGGGTGCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOG ENSG00000183691 CDS Human protein_coding chr17:54671848 chr17:54671848 synonymous SNV . 0 21 hm5C_associated_SNPs_1410 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1410 DeepMRMD:1;iRNA_m5C:1 1411 chr17 26671537 26671537 1 + C T SKCM 26671537 + 26671517 26671557 41 AAGATGAGGAGACCTTTGAACTGCGGGACCGTGTCCGCCGC AAGATGAGGAGACCTTTGAATTGCGGGACCGTGTCCGCCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFAIP1 ENSG00000109079 CDS Human protein_coding chr17:26671537 chr17:26671537 synonymous SNV . 0 21 hm5C_associated_SNPs_1411 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1411 DeepMRMD:1;iRNA_m5C:1 1412 chr1 164789352 164789352 1 + C T SKCM 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTGTTTATGAGCGTGCAGTCACTCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789352 synonymous SNV . 0 21 hm5C_associated_SNPs_1412 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_1412 DeepMRMD:1;iRNA_m5C:1 1413 chr3 142840893 142840893 1 + C T SKCM 142840893 + 142840873 142840913 41 GCTGCAGACAGCCCTGCAGCCCCCTGACTGGCTGCAGGGCC GCTGCAGACAGCCCTGCAGCTCCCTGACTGGCTGCAGGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840893 chr3:142840893 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_1413 0 0 1 0 0 cytosol 1 0 1 1 hm5C_site_1413 DeepMRMD:1;iRNA_m5C:1 1414 chr3 157841665 157841665 1 + C T SKCM 157841665 + 157841645 157841685 41 TTTATTTCAGACGCAGGCATCGATCAAGCAGTAGCTCTTCT TTTATTTCAGACGCAGGCATTGATCAAGCAGTAGCTCTTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841665 chr3:157841665 stopgain 0.997 1 21 hm5C_associated_SNPs_1414 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1414 DeepMRMD:1;iRNA_m5C:1 1415 chr7 50607616 50607616 1 + G A SKCM 50607616 - 50607596 50607636 41 ATTGGCTGCATCGGCTTCTCCTGGGTGAGGGTCCGGATGCA ATTGGCTGCATCGGCTTCTCTTGGGTGAGGGTCCGGATGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DDC ENSG00000132437 CDS Human protein_coding chr7:50607616 chr7:50607616 synonymous SNV . 0 21 hm5C_associated_SNPs_1415 0 0 0 0 1 cytosol 1 0 1 1 hm5C_site_1415 DeepMRMD:1;iRNA_m5C:1 1416 chr7 44801091 44801091 1 + C A SKCM 44801091 + 44801071 44801111 41 CGGCTGACCTTCCCTGTGCGCGATGGGGTGGTCCTGGAGCC CGGCTGACCTTCCCTGTGCGAGATGGGGTGGTCCTGGAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801091 chr7:44801091 synonymous SNV . 0 21 hm5C_associated_SNPs_1416 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1416 DeepMRMD:1;iRNA_m5C:1 1417 chr21 45483598 45483598 1 + C T SKCM 45483598 + 45483578 45483618 41 TGCTGCTCTTCCTGCAGAGGCCGTGGGAGGTGGCCCAGCGC TGCTGCTCTTCCTGCAGAGGTCGTGGGAGGTGGCCCAGCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45483598 chr21:45483598 nonsynonymous SNV 0.985 4 21 hm5C_associated_SNPs_1417 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1417 DeepMRMD:1;iRNA_m5C:1 1418 chr16 27374351 27374351 1 + C T SKCM 27374351 + 27374331 27374371 41 TCCTCCGCCGAAATGTCCTCCAGCATGGGGCAGCTGCAGCC TCCTCCGCCGAAATGTCCTCTAGCATGGGGCAGCTGCAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IL4R ENSG00000077238 CDS Human protein_coding chr16:27374351 chr16:27374351 stopgain 0.177 0 21 hm5C_associated_SNPs_1418 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1418 DeepMRMD:1;iRNA_m5C:1 1419 chr2 242757827 242757827 1 + C T SKCM 242757827 + 242757807 242757847 41 GTCAGTGGGCCCCGGGAGTCCCCTCCAGCCTCCACTCCTCG GTCAGTGGGCCCCGGGAGTCTCCTCCAGCCTCCACTCCTCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NEU4 ENSG00000204099 CDS Human protein_coding chr2:242757827 chr2:242757827 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1419 0 0 1 0 0 cytosol 1 0 1 1 hm5C_site_1419 DeepMRMD:1;iRNA_m5C:1 1420 chr7 142459847 142459847 1 + C T SKCM 142459847 + 142459827 142459867 41 ACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACACTGC ACTGGCACGAAGTGCCTCATTTCTGGCTGGGGCAACACTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459847 chr7:142459847 synonymous SNV . 0 21 hm5C_associated_SNPs_1420 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1420 DeepMRMD:1;iRNA_m5C:1 1421 chr22 29445774 29445774 1 + C T SKCM 29445774 + 29445754 29445794 41 TTCAGCTGCTATCACGGCCACCGCTCGGTGTGCAGTGGCTA TTCAGCTGCTATCACGGCCATCGCTCGGTGTGCAGTGGCTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29445774 chr22:29445774 synonymous SNV . 0 21 hm5C_associated_SNPs_1421 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_1421 DeepMRMD:1;iRNA_m5C:1 1422 chr7 142458544 142458544 1 + C T SKCM 142458544 + 142458524 142458564 41 CAACGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGT CAACGAACAGTGGGTGGTATTAGCAGGCCACTGCTACAAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458544 chr7:142458544 nonsynonymous SNV 0.751 3 21 hm5C_associated_SNPs_1422 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1422 DeepMRMD:1;iRNA_m5C:1 1423 chr13 115091186 115091186 1 + C T SKCM 115091186 + 115091166 115091206 41 AAGAAGCTCAAGAAAGACAACCAAGAGAGCTCAGACGCTGA AAGAAGCTCAAGAAAGACAATCAAGAGAGCTCAGACGCTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115091186 chr13:115091186 synonymous SNV . 0 21 hm5C_associated_SNPs_1423 0 0 0 0 0 nucleus 1 0 1 1 hm5C_site_1423 DeepMRMD:1;iRNA_m5C:1 1424 chr4 79173606 79173606 1 + C T SKCM 79173606 + 79173586 79173626 41 CTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC CTTGCAATCATGGGGAAGTCTGATGTACCCCCCAACCATGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79173606 chr4:79173606 stopgain 0.134 0 21 hm5C_associated_SNPs_1424 1 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1424 DeepMRMD:1;iRNA_m5C:1 Cryptophthalmos syndrome Cryptophthalmos syndrome 1425 chr7 100205614 100205614 1 + C T SKCM 100205614 + 100205594 100205634 41 GAACAGAGGCCCCGTCCTTCCTCCAGAGAGCTTTGTGGTTC GAACAGAGGCCCCGTCCTTCTTCCAGAGAGCTTTGTGGTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100205614 chr7:100205614 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_1425 0 0 1 1 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1425 DeepMRMD:1;iRNA_m5C:1 1426 chrX 153678616 153678616 1 + C T SKCM 153678616 + 153678596 153678636 41 AAGAACAAGCACATCTTTCCCGCCAGCCGCTGGGAACCCTA AAGAACAAGCACATCTTTCCTGCCAGCCGCTGGGAACCCTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678616 chrX:153678616 synonymous SNV . 0 21 hm5C_associated_SNPs_1426 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1426 DeepMRMD:1;iRNA_m5C:1 1427 chr17 46135824 46135824 1 + C T SKCM 46135824 + 46135804 46135844 41 GACTTCTTACTCTTCAGCCCCGAGGTGGAAAGCCTGCCTGT GACTTCTTACTCTTCAGCCCTGAGGTGGAAAGCCTGCCTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46135824 chr17:46135824 synonymous SNV . 0 21 hm5C_associated_SNPs_1427 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1427 DeepMRMD:1;iRNA_m5C:1 1428 chr7 142458415 142458415 1 + C T SKCM 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGCTGCCCTCTTTGATGATGATGACAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458415 nonsynonymous SNV 0.006 3 21 hm5C_associated_SNPs_1428 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1428 DeepMRMD:1;iRNA_m5C:1 1429 chr7 56130745 56130745 1 + C T SKCM 56130745 + 56130725 56130765 41 ATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTC ATTCTCTTGGTTGATGAGATTATGCGAGCTGGAATGTCTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56130745 chr7:56130745 synonymous SNV . 0 21 hm5C_associated_SNPs_1429 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_1429 DeepMRMD:1;iRNA_m5C:1 1430 chr2 204082013 204082013 1 + C T SKCM 204082013 + 204081993 204082033 41 TTCTCGAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA TTCTCGAAAATTTTGGGGATTGAGCAAGCGGCTCAGCCAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204082013 chr2:204082013 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_1430 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1430 DeepMRMD:1;iRNA_m5C:1 1431 chr19 10893721 10893721 1 + C T SKCM 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGAAGTTTTTCCTCTCCCACCCGGCCTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893721 synonymous SNV . 0 21 hm5C_associated_SNPs_1431 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1431 DeepMRMD:1;iRNA_m5C:1 1432 chr1 44056841 44056841 1 + C T SKCM 44056841 + 44056821 44056861 41 TGGCGGCCTCAGCCCTTTCTCGGAATATGCCTTCCGCGTGC TGGCGGCCTCAGCCCTTTCTTGGAATATGCCTTCCGCGTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44056841 chr1:44056841 nonsynonymous SNV 0.946 3 21 hm5C_associated_SNPs_1432 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1432 DeepMRMD:1;iRNA_m5C:1 1433 chr17 7479910 7479910 1 + C T SKCM 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATCGGGGGCACTAACGTGCGTGCTGAGGTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479910 stopgain . 0 21 hm5C_associated_SNPs_1433 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1433 DeepMRMD:1;iRNA_m5C:1 1434 chr17 7479909 7479909 1 + C T SKCM 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATCGGGGGCATCAACGTGCGTGCTGAGGTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479909 nonsynonymous SNV 0.988 2 21 hm5C_associated_SNPs_1434 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1434 DeepMRMD:1;iRNA_m5C:1 1435 chr22 45822019 45822019 1 + C T SKCM 45822019 + 45821999 45822039 41 CAGGAGCAGCTGGAGCAGATCCGCCTAGTCCAGAAGCAGCA CAGGAGCAGCTGGAGCAGATTCGCCTAGTCCAGAAGCAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45822019 chr22:45822019 synonymous SNV . 0 21 hm5C_associated_SNPs_1435 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1435 DeepMRMD:1;iRNA_m5C:1 1436 chr22 17589371 17589371 1 + C T SKCM 17589371 + 17589351 17589391 41 GCTGGAAGAGCAGGCCATCTCGGAGGCAGGAGTCATGACCT GCTGGAAGAGCAGGCCATCTTGGAGGCAGGAGTCATGACCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IL17RA ENSG00000177663 CDS Human protein_coding chr22:17589371 chr22:17589371 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_1436 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1436 DeepMRMD:1;iRNA_m5C:1 1437 chr14 61201633 61201633 1 + C T SKCM 61201633 + 61201613 61201653 41 CACCAAATATCGGAACCCCTCCTTGAAGCTGATGGTGAATG CACCAAATATCGGAACCCCTTCTTGAAGCTGATGGTGAATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61201633 chr14:61201633 nonsynonymous SNV 0.800 3 21 hm5C_associated_SNPs_1437 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1437 DeepMRMD:1;iRNA_m5C:1 1438 chr11 65273607 65273607 1 + C T SKCM 65273607 + 65273587 65273627 41 AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTT AGATGCTGGTGGTTGGCACTTCTGGTTTCCAGGACGGGGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273607 chr11:65273607 . . 0 21 hm5C_associated_SNPs_1438 0 0 0 2 0 unknown 1 0 1 1 hm5C_site_1438 DeepMRMD:1;iRNA_m5C:1 1439 chr12 121660807 121660807 1 + C G SKCM 121660807 + 121660787 121660827 41 TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG TGTCAAGACGTGTGAGGTGGGGGCCTGGTGCCCGGTGGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660807 chr12:121660807 nonsynonymous SNV 0.934 0 21 hm5C_associated_SNPs_1439 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1439 DeepMRMD:1;iRNA_m5C:1 1440 chr15 25223433 25223433 1 + C T SKCM 25223433 + 25223413 25223453 41 GCCAATAGGCATGCCGCCTCCGGGAATGAGACCCCCTCCAC GCCAATAGGCATGCCGCCTCTGGGAATGAGACCCCCTCCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25223433 chr15:25223433 nonsynonymous SNV 0.926 3 21 hm5C_associated_SNPs_1440 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1440 DeepMRMD:1;iRNA_m5C:1 1441 chr7 142458477 142458477 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAATTCTGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458477 stopgain 0.997 1 21 hm5C_associated_SNPs_1441 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1441 DeepMRMD:1;iRNA_m5C:1 1442 chr2 27455031 27455031 1 + C T SKCM 27455031 + 27455011 27455051 41 GACAGCCTTTGCCGCCAGACCTGCTGCAACAGGCCAAGTGT GACAGCCTTTGCCGCCAGACTTGCTGCAACAGGCCAAGTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27455031 chr2:27455031 synonymous SNV . 0 21 hm5C_associated_SNPs_1442 0 0 1 0 1 Exosome 1 0 1 1 hm5C_site_1442 DeepMRMD:1;iRNA_m5C:1 1443 chr1 44446804 44446804 1 + C T SKCM 44446804 + 44446784 44446824 41 AGCAGCCGGATGCCCGGGCCCACTGGGCGGGCCAGTGGCCG AGCAGCCGGATGCCCGGGCCTACTGGGCGGGCCAGTGGCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control B4GALT2 ENSG00000117411 CDS Human protein_coding chr1:44446804 chr1:44446804 nonsynonymous SNV 0.986 1 21 hm5C_associated_SNPs_1443 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1443 DeepMRMD:1;iRNA_m5C:1 1444 chr17 30692381 30692381 1 + C T SKCM 30692381 + 30692361 30692401 41 CTGTTCCACGTCCTGGAATTCCTCCAATGACTCAAGCACAG CTGTTCCACGTCCTGGAATTTCTCCAATGACTCAAGCACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692381 chr17:30692381 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1444 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1444 DeepMRMD:1;iRNA_m5C:1 1445 chr10 129141980 129141980 1 + C T SKCM 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTGCAACTGGAGAATTTTTTAAGTGCCAAGAGAGCCAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141980 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1445 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1445 DeepMRMD:1;iRNA_m5C:1 1446 chrX 73041549 73041549 1 + G A SKCM 73041549 - 73041529 73041569 41 TGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACTCACAG TGGCTGGGCTTTGACCTTTTTCGTTTTTAAATCACTCACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041549 chrX:73041549 . . 0 21 hm5C_associated_SNPs_1446 0 0 1 2 0 unknown 1 0 1 1 hm5C_site_1446 DeepMRMD:1;iRNA_m5C:1 1447 chrX 152958983 152958983 1 + C T SKCM 152958983 + 152958963 152959003 41 GCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCATGGCTGC GCTGGCTTCGTGGTCTTCTCTATCCTGGGCTTCATGGCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958983 chrX:152958983 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1447 0 0 1 0 3 Ribosome 1 0 1 1 hm5C_site_1447 DeepMRMD:1;iRNA_m5C:1 1448 chr17 65735123 65735123 1 + C T SKCM 65735123 + 65735103 65735143 41 GACATCCCAGCACAGCATATCACGGTAAGTGTTCATACAAG GACATCCCAGCACAGCATATTACGGTAAGTGTTCATACAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735123 chr17:65735123 synonymous SNV . 0 21 hm5C_associated_SNPs_1448 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1448 DeepMRMD:1;iRNA_m5C:1 1449 chr16 88926153 88926153 1 + C T SKCM 88926153 + 88926133 88926173 41 CCCTTCGAGACAACGAAATTCGCAGCGTAAGTCAGGGAGTT CCCTTCGAGACAACGAAATTTGCAGCGTAAGTCAGGGAGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926153 chr16:88926153 nonsynonymous SNV 0.954 5 21 hm5C_associated_SNPs_1449 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_1449 DeepMRMD:1;iRNA_m5C:1 1450 chr3 148714596 148714596 1 + C T SKCM 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGACCCAGGGTGGCTTGACTGCTTCAATTCCGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714596 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1450 0 0 1 0 3 Cytosol 1 0 1 1 hm5C_site_1450 DeepMRMD:1;iRNA_m5C:1 1451 chr1 116929972 116929972 1 + C T SKCM 116929972 + 116929952 116929992 41 GGTCCCAACGCCCTCACTCCCCCTCCCACTACTCCTGAATG GGTCCCAACGCCCTCACTCCTCCTCCCACTACTCCTGAATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116929972 chr1:116929972 synonymous SNV . 0 21 hm5C_associated_SNPs_1451 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1451 DeepMRMD:1;iRNA_m5C:1 1452 chr18 48190637 48190637 1 + C T SKCM 48190637 + 48190617 48190657 41 AAGTTCAGCGTGGCGTACATCGTCCAGGAGTACATGGAGAC AAGTTCAGCGTGGCGTACATTGTCCAGGAGTACATGGAGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48190637 chr18:48190637 synonymous SNV . 0 21 hm5C_associated_SNPs_1452 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1452 DeepMRMD:1;iRNA_m5C:1 1453 chr7 142459658 142459658 1 + C T SKCM 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCACAACATTGAAGTCCTGGAGGGGAATGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459658 synonymous SNV 0.234 0 21 hm5C_associated_SNPs_1453 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1453 DeepMRMD:1;iRNA_m5C:1 1454 chr7 73731904 73731904 1 + C T SKCM 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCTCCGGCCGTGGGGGGAAGCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731904 nonsynonymous SNV 0.996 3 21 hm5C_associated_SNPs_1454 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_1454 DeepMRMD:1;iRNA_m5C:1 1455 chr1 150445130 150445130 1 + C T SKCM 150445130 + 150445110 150445150 41 GAGATGCACCCACTCATCTACCCTCTGTGGATCTTTCGAAC GAGATGCACCCACTCATCTATCCTCTGTGGATCTTTCGAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150445130 chr1:150445130 nonsynonymous SNV 0.978 0 21 hm5C_associated_SNPs_1455 0 0 1 2 0 Cytosol 1 0 1 1 hm5C_site_1455 DeepMRMD:1;iRNA_m5C:1 1456 chr2 74326589 74326589 1 + C T SKCM 74326589 + 74326569 74326609 41 TCCCCCGCGAGGTCCGACGCCTGCCCGAGCCTGCCAAGTCC TCCCCCGCGAGGTCCGACGCTTGCCCGAGCCTGCCAAGTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74326589 chr2:74326589 synonymous SNV . 0 21 hm5C_associated_SNPs_1456 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1456 DeepMRMD:1;iRNA_m5C:1 1457 chr20 37154672 37154672 1 + C T SKCM 37154672 + 37154652 37154692 41 GAAACGGACCCCAACAACACCCAAATGATATTAGGTTTGTA GAAACGGACCCCAACAACACTCAAATGATATTAGGTTTGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37154672 chr20:37154672 synonymous SNV . 0 21 hm5C_associated_SNPs_1457 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1457 DeepMRMD:1;iRNA_m5C:1 1458 chr7 128505545 128505545 1 + C T SKCM 128505545 + 128505525 128505565 41 ATCCCCGCTGTCCTGGAGATCCCCTCCAAGGAGCACCCATA ATCCCCGCTGTCCTGGAGATTCCCTCCAAGGAGCACCCATA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP6V1F ENSG00000128524 CDS Human protein_coding chr7:128505545 chr7:128505545 synonymous SNV . 0 21 hm5C_associated_SNPs_1458 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1458 DeepMRMD:1;iRNA_m5C:1 1459 chr22 31658771 31658771 1 + C T SKCM 31658771 + 31658751 31658791 41 GGGGACACTGAGGAGACGTTCCCTAAGGTGCCACCTCCCAC GGGGACACTGAGGAGACGTTTCCTAAGGTGCCACCTCCCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658771 chr22:31658771 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1459 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1459 DeepMRMD:1;iRNA_m5C:1 1460 chr2 220349085 220349085 1 + C T SKCM 220349085 + 220349065 220349105 41 GTGCCCTCAGCCGGGGGTCCCCCGGTGCTAGCCGAGAAAGC GTGCCCTCAGCCGGGGGTCCTCCGGTGCTAGCCGAGAAAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220349085 chr2:220349085 synonymous SNV . 0 21 hm5C_associated_SNPs_1460 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_1460 DeepMRMD:1;iRNA_m5C:1 1461 chr22 24573545 24573545 1 + C T SKCM 24573545 + 24573525 24573565 41 AGTGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAG AGTGAGACTCAGCCCCTGAGTTCTCCCCCAACAGCTGCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573545 chr22:24573545 synonymous SNV . 0 21 hm5C_associated_SNPs_1461 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1461 DeepMRMD:1;iRNA_m5C:1 1462 chr17 55183725 55183725 1 + C T SKCM 55183725 + 55183705 55183745 41 AAAGCCCAGGATAGAGGTGTCGAGGGAGAACTGGGCAATGA AAAGCCCAGGATAGAGGTGTTGAGGGAGAACTGGGCAATGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55183725 chr17:55183725 synonymous SNV . 0 21 hm5C_associated_SNPs_1462 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1462 DeepMRMD:1;iRNA_m5C:1 1463 chr7 129064943 129064943 1 + C T SKCM 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGCTCCTGAGGGTTGCTATAAGCAGGATGTCTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064943 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_1463 0 0 0 0 2 chromatin 1 0 1 1 hm5C_site_1463 DeepMRMD:1;iRNA_m5C:1 1464 chr1 874684 874684 1 + C T SKCM 874684 + 874664 874704 41 TGCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGAC TGCTGCCGCGGGAGCTGGGGTCCAGCATGGCCCCGGAGGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874684 chr1:874684 nonsynonymous SNV 0.013 0 21 hm5C_associated_SNPs_1464 0 0 0 0 1 nucleus 1 0 1 1 hm5C_site_1464 DeepMRMD:1;iRNA_m5C:1 1465 chr19 42839497 42839497 1 + C T SKCM 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCGTCCTATACAACTTCTTCGCCAACACCTGGGAGTCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839497 nonsynonymous SNV 0.749 2 21 hm5C_associated_SNPs_1465 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1465 DeepMRMD:1;iRNA_m5C:1 1466 chr2 170462562 170462562 1 + C T SKCM 170462562 + 170462542 170462582 41 TCTATAGGTGAAAAGGGGACCGGGAAATCAACTCAGAAACC TCTATAGGTGAAAAGGGGACTGGGAAATCAACTCAGAAACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIG ENSG00000138398 CDS Human protein_coding chr2:170462562 chr2:170462562 synonymous SNV . 0 21 hm5C_associated_SNPs_1466 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1466 DeepMRMD:1;iRNA_m5C:1 1467 chr3 49060174 49060174 1 + C T SKCM 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAAGACAGCTTTTCCTTCTTCTGGTTGCTGGAGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060174 nonsynonymous SNV 0.991 3 21 hm5C_associated_SNPs_1467 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1467 DeepMRMD:1;iRNA_m5C:1 1468 chr17 4859344 4859344 1 + C T SKCM 4859344 + 4859324 4859364 41 ATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCC ATGACTTGACAGTCACCAACTCCAAGAGGATTGCCCAGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859344 chr17:4859344 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1468 0 0 1 0 1 nucleus 1 0 1 1 hm5C_site_1468 DeepMRMD:1;iRNA_m5C:1 1469 chr8 145151587 145151587 1 + C T SKCM 145151587 + 145151567 145151607 41 TCTACTTCAACCCCTACTTTCCTGGCCAGGCCATTGCCATG TCTACTTCAACCCCTACTTTTCTGGCCAGGCCATTGCCATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151587 chr8:145151587 nonsynonymous SNV 0.971 1 21 hm5C_associated_SNPs_1469 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1469 DeepMRMD:1;iRNA_m5C:1 1470 chr17 38142926 38142926 1 + C T SKCM 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTATCTCCAACTCCTTGTGGTCATCTTCATGATGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142926 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_1470 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1470 DeepMRMD:1;iRNA_m5C:1 1471 chr11 75279855 75279855 1 + C T SKCM 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATACCGTGGGTGTTATGATGATGCACCGGACAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279855 synonymous SNV . 0 21 hm5C_associated_SNPs_1471 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1471 DeepMRMD:1;iRNA_m5C:1 1472 chr12 121660778 121660778 1 + C T SKCM 121660778 + 121660758 121660798 41 ACAGGCAGGTGCGTAGCTTTCAACGGGTCTGTCAAGACGTG ACAGGCAGGTGCGTAGCTTTTAACGGGTCTGTCAAGACGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660778 chr12:121660778 synonymous SNV . 0 21 hm5C_associated_SNPs_1472 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1472 DeepMRMD:1;iRNA_m5C:1 1473 chr15 93482839 93482839 1 + C T SKCM 93482839 + 93482819 93482859 41 AACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAG AACCTCGTGTTAAAAAGCAGTCGAAGACTCAGCGTGGAAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482839 chr15:93482839 nonsynonymous SNV 0.986 0 21 hm5C_associated_SNPs_1473 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1473 DeepMRMD:1;iRNA_m5C:1 1474 chr15 93482840 93482840 1 + C T SKCM 93482840 + 93482820 93482860 41 ACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGA ACCTCGTGTTAAAAAGCAGCTGAAGACTCAGCGTGGAAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482840 chr15:93482840 nonsynonymous SNV 0.987 0 21 hm5C_associated_SNPs_1474 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1474 DeepMRMD:1;iRNA_m5C:1 1475 chr17 685745 685745 1 + C T SKCM 685745 + 685725 685765 41 GCCCAGTGAAAGTGGTGTTTCCTTCCGGAGAGGTGGTGGAA GCCCAGTGAAAGTGGTGTTTTCTTCCGGAGAGGTGGTGGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRM3 ENSG00000171861 CDS Human protein_coding chr17:685745 chr17:685745 nonsynonymous SNV 0.779 3 21 hm5C_associated_SNPs_1475 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_1475 DeepMRMD:1;iRNA_m5C:1 1476 chr17 78082400 78082400 1 + C T SKCM 78082400 + 78082380 78082420 41 AACATGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGG AACATGACCAGGGCCCACTTTCCCCTGGTGAGTTGGGGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082400 chr17:78082400 synonymous SNV . 0 21 hm5C_associated_SNPs_1476 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1476 DeepMRMD:1;iRNA_m5C:1 1477 chr1 15978205 15978205 1 + C T SKCM 15978205 + 15978185 15978225 41 GTTTCTTTCTTCCAAGTGTTCCATCGACCTGAAGAAAAATG GTTTCTTTCTTCCAAGTGTTTCATCGACCTGAAGAAAAATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDI2 ENSG00000197312 CDS Human protein_coding chr1:15978205 chr1:15978205 nonsynonymous SNV 0.912 2 21 hm5C_associated_SNPs_1477 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1477 DeepMRMD:1;iRNA_m5C:1 1478 chr15 42059304 42059304 1 + C T SKCM 42059304 + 42059284 42059324 41 GATGCAGATGGTCAGAGTCTCAAGGTGATGCCTTGTTTGGC GATGCAGATGGTCAGAGTCTTAAGGTGATGCCTTGTTTGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42059304 chr15:42059304 synonymous SNV . 0 21 hm5C_associated_SNPs_1478 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1478 DeepMRMD:1;iRNA_m5C:1 1479 chr7 142458485 142458485 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCTCTGAATTCTGGCTACCACTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458485 synonymous SNV . 0 21 hm5C_associated_SNPs_1479 0 0 0 0 3 Cytosol 1 0 1 1 hm5C_site_1479 DeepMRMD:1;iRNA_m5C:1 1480 chr2 88405935 88405935 1 + C T SKCM 88405935 + 88405915 88405955 41 GCGGATGCTGAGCATTGTTTCGGAGGTCCTTTCCTACCTCC GCGGATGCTGAGCATTGTTTTGGAGGTCCTTTCCTACCTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88405935 chr2:88405935 nonsynonymous SNV 0.028 0 21 hm5C_associated_SNPs_1480 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_1480 DeepMRMD:1;iRNA_m5C:1 1481 chr5 64267545 64267545 1 + C T SKCM 64267545 + 64267525 64267565 41 TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGAAT TTTAGAGGAAGAAGCCCCTCTAGATGGTGCTGTTGCCGAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64267545 chr5:64267545 nonsynonymous SNV 0.908 0 21 hm5C_associated_SNPs_1481 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1481 DeepMRMD:1;iRNA_m5C:1 1482 chr1 22333383 22333383 1 + C T SKCM 22333383 + 22333363 22333403 41 CTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAG CTCCCCAGCAATGACATCGCTCTCATCAAGCTCTCACGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333383 chr1:22333383 synonymous SNV . 0 21 hm5C_associated_SNPs_1482 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1482 DeepMRMD:1;iRNA_m5C:1 1483 chr10 118314748 118314748 1 + C T SKCM 118314748 + 118314728 118314768 41 GAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGA GAATTAGTCCGATTGGACCCTAGCGATGCCAAATTTGTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314748 chr10:118314748 synonymous SNV . 0 21 hm5C_associated_SNPs_1483 0 0 0 0 1 unknown 1 0 1 1 hm5C_site_1483 DeepMRMD:1;iRNA_m5C:1 1484 chr20 62373328 62373328 1 + C T SKCM 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GACCTGGCCAGTGACCAGTCTTCTCCGTCCACCCCGTCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373328 synonymous SNV . 0 21 hm5C_associated_SNPs_1484 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1484 DeepMRMD:1;iRNA_m5C:1 1485 chr7 142459664 142459664 1 + C T SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTTCTGGAGGGGAATGAGCAGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459664 synonymous SNV . 0 21 hm5C_associated_SNPs_1485 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1485 DeepMRMD:1;iRNA_m5C:1 1486 chr8 38899581 38899581 1 + C T SKCM 38899581 + 38899561 38899601 41 TGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTGGTGG TGAAGCCTATAGTGCTCCCTTCTGTGGTAATAAGTTGGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899581 chr8:38899581 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_1486 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1486 DeepMRMD:1;iRNA_m5C:1 1487 chr12 52642524 52642524 1 + C T SKCM 52642524 + 52642504 52642544 41 TCCGGACCGCATCCGCCAGTCGCAGGAGTGCCCGCGACTGA TCCGGACCGCATCCGCCAGTTGCAGGAGTGCCCGCGACTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52642524 chr12:52642524 nonsynonymous SNV 0.002 2 21 hm5C_associated_SNPs_1487 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1487 DeepMRMD:1;iRNA_m5C:1 1488 chr19 39215191 39215191 1 + C T SKCM 39215191 + 39215171 39215211 41 ATGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGG ATGTTGTGGGGCCCTGGATCTAGACCAAGATGGAGGTGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215191 chr19:39215191 stopgain 1.000 1 21 hm5C_associated_SNPs_1488 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1488 DeepMRMD:1;iRNA_m5C:1 1489 chr1 16778415 16778415 1 + C T SKCM 16778415 + 16778395 16778435 41 GCTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCA GCTGAGCCTGCTTCCCCCTCTCCCAGGGGGGAAAACCTCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778415 chr1:16778415 nonsynonymous SNV 0.894 4 21 hm5C_associated_SNPs_1489 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_1489 DeepMRMD:1;iRNA_m5C:1 1490 chr21 37785214 37785214 1 + C A SKCM 37785214 + 37785194 37785234 41 TGCCTTCCTGGCCATTTCTTCCACGGACGGTTACTGCTCAT TGCCTTCCTGGCCATTTCTTACACGGACGGTTACTGCTCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37785214 chr21:37785214 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1490 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1490 DeepMRMD:1;iRNA_m5C:1 1491 chr5 121786629 121786629 1 + C T SKCM 121786629 + 121786609 121786649 41 GACTACCCCAGTGAGGAAGGCTGACCGACCAAGGCCGCAGC GACTACCCCAGTGAGGAAGGTTGACCGACCAAGGCCGCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786629 chr5:121786629 nonsynonymous SNV 0.847 0 21 hm5C_associated_SNPs_1491 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1491 DeepMRMD:1;iRNA_m5C:1 1492 chr10 93751949 93751949 1 + C T SKCM 93751949 + 93751929 93751969 41 ATAATTACACTCTACAGGCACCAGAAAGCTGCCTTTGCTAT ATAATTACACTCTACAGGCATCAGAAAGCTGCCTTTGCTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93751949 chr10:93751949 synonymous SNV . 0 21 hm5C_associated_SNPs_1492 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1492 DeepMRMD:1;iRNA_m5C:1 1493 chr14 75746585 75746585 1 + C T SKCM 75746585 + 75746565 75746605 41 TCTGTTTTGTTCTAGGACTTCTGCACGGACCTGGCCGTCTC TCTGTTTTGTTCTAGGACTTTTGCACGGACCTGGCCGTCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746585 chr14:75746585 synonymous SNV . 0 21 hm5C_associated_SNPs_1493 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1493 DeepMRMD:1;iRNA_m5C:1 1494 chr19 54965776 54965776 1 + C T SKCM 54965776 + 54965756 54965796 41 CAGCACAGCCAGGCGGGGCCCGCCACGGGCCAGGCCTATGG CAGCACAGCCAGGCGGGGCCTGCCACGGGCCAGGCCTATGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54965776 chr19:54965776 synonymous SNV . 0 21 hm5C_associated_SNPs_1494 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_1494 DeepMRMD:1;iRNA_m5C:1 1495 chr11 65824782 65824782 1 + C T SKCM 65824782 + 65824762 65824802 41 CCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC CCCCACTCCTACAGTTTTGCTCATGGGAGCCCCTGTTCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824782 chr11:65824782 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1495 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1495 DeepMRMD:1;iRNA_m5C:1 1496 chr2 153482014 153482014 1 + C T SKCM 153482014 + 153481994 153482034 41 CAGTGTTTAACTGGGTTGCTCTGAAGCCCAATCAGATCAAT CAGTGTTTAACTGGGTTGCTTTGAAGCCCAATCAGATCAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153482014 chr2:153482014 synonymous SNV . 0 21 hm5C_associated_SNPs_1496 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1496 DeepMRMD:1;iRNA_m5C:1 1497 chr3 30713566 30713566 1 + C T SKCM 30713566 + 30713546 30713586 41 AAGGACATCTTCTCAGACATCAATCTGAAGCATGAGAACAT AAGGACATCTTCTCAGACATTAATCTGAAGCATGAGAACAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30713566 chr3:30713566 synonymous SNV . 0 21 hm5C_associated_SNPs_1497 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1497 DeepMRMD:1;iRNA_m5C:1 1498 chr16 30976366 30976366 1 + C T SKCM 30976366 + 30976346 30976386 41 CTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTGGT CTGCCTCAGAGGCTCCACCCTCGGAGCCTCCAGAACCTGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976366 chr16:30976366 nonsynonymous SNV 0.947 2 21 hm5C_associated_SNPs_1498 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1498 DeepMRMD:1;iRNA_m5C:1 1499 chr3 138119379 138119379 1 + C T SKCM 138119379 + 138119359 138119399 41 TGAGCTTTGCCTTCCAGATTCCGTACATAGAAACCAGTGCC TGAGCTTTGCCTTCCAGATTTCGTACATAGAAACCAGTGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRAS ENSG00000158186 CDS Human protein_coding chr3:138119379 chr3:138119379 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_1499 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1499 DeepMRMD:1;iRNA_m5C:1 1500 chr19 14580207 14580207 1 + C T SKCM 14580207 + 14580187 14580227 41 ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG ACCAGTGCGGGACACCCCTTTCTGGTGAACCTCTTCGGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580207 chr19:14580207 synonymous SNV . 0 21 hm5C_associated_SNPs_1500 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1500 DeepMRMD:1;iRNA_m5C:1 1501 chr7 142458470 142458470 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458470 synonymous SNV . 0 21 hm5C_associated_SNPs_1501 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1501 DeepMRMD:1;iRNA_m5C:1 1502 chr7 91714867 91714867 1 + C T SKCM 91714867 + 91714847 91714887 41 GCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACC GCTTTCTCTCACTGAGTCTCTCTATAGTGATGGAGAGGACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714867 chr7:91714867 nonsynonymous SNV 0.393 0 21 hm5C_associated_SNPs_1502 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1502 DeepMRMD:1;iRNA_m5C:1 1503 chr14 72152246 72152246 1 + C T SKCM 72152246 + 72152226 72152266 41 GGTGCAGAGTCCCATGACCTCGCGGCTGAATGCTGGAAAAG GGTGCAGAGTCCCATGACCTTGCGGCTGAATGCTGGAAAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152246 chr14:72152246 nonsynonymous SNV 0.894 1 21 hm5C_associated_SNPs_1503 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1503 DeepMRMD:1;iRNA_m5C:1 1504 chr7 142459713 142459713 1 + C T SKCM 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATCATCCGCCACTCCCAATACGACAGGAAGACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459713 nonsynonymous SNV 0.015 3 21 hm5C_associated_SNPs_1504 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1504 DeepMRMD:1;iRNA_m5C:1 1505 chr17 59161840 59161840 1 + C T SKCM 59161840 + 59161820 59161860 41 CATTGCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCAT CATTGCAGGATCCAGCCAGTTCGCTCTGACCCCGTCAGCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59161840 chr17:59161840 synonymous SNV . 0 21 hm5C_associated_SNPs_1505 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1505 DeepMRMD:1;iRNA_m5C:1 1506 chr7 128407644 128407644 1 + C T SKCM 128407644 + 128407624 128407664 41 AGACCAAAGACTGGATCCTTCCCTCAGACTATGATCATGCA AGACCAAAGACTGGATCCTTTCCTCAGACTATGATCATGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407644 chr7:128407644 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1506 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1506 DeepMRMD:1;iRNA_m5C:1 1507 chr17 48628471 48628471 1 + C T SKCM 48628471 + 48628451 48628491 41 CGTGCGGACCTTGCTCAATTCAGGGCTGGAGAAGCTCTTCC CGTGCGGACCTTGCTCAATTTAGGGCTGGAGAAGCTCTTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48628471 chr17:48628471 nonsynonymous SNV 0.018 0 21 hm5C_associated_SNPs_1507 0 0 1 0 1 nucleus 1 0 1 1 hm5C_site_1507 DeepMRMD:1;iRNA_m5C:1 1508 chr16 90028230 90028230 1 + C T SKCM 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACGACCTGGCTGTGATTCCTGCACGCGTTGTACACAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028230 synonymous SNV . 0 21 hm5C_associated_SNPs_1508 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1508 DeepMRMD:1;iRNA_m5C:1 1509 chr20 42169585 42169585 1 + C T SKCM 42169585 + 42169565 42169605 41 CCCCACCAGGCAAGAATAGTCAGAGTGACCCATGTATCTGG CCCCACCAGGCAAGAATAGTTAGAGTGACCCATGTATCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42169585 chr20:42169585 synonymous SNV . 0 21 hm5C_associated_SNPs_1509 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1509 DeepMRMD:1;iRNA_m5C:1 1510 chr7 142458466 142458466 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458466 nonsynonymous SNV 0.733 4 21 hm5C_associated_SNPs_1510 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1510 DeepMRMD:1;iRNA_m5C:1 1511 chr19 1440440 1440440 1 + C T SKCM 1440440 + 1440420 1440460 41 ATCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTA ATCGGGGCCACCCACTCCTCTCGCTTCATCCCTCTCAAGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440440 chr19:1440440 synonymous SNV . 0 21 hm5C_associated_SNPs_1511 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1511 DeepMRMD:1;iRNA_m5C:1 1512 chr1 21771644 21771644 1 + C T SKCM 21771644 + 21771624 21771664 41 AGGCCCTGATGTAGAAACTTCCCCATTCGGTGCACCAAGAG AGGCCCTGATGTAGAAACTTTCCCATTCGGTGCACCAAGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21771644 chr1:21771644 nonsynonymous SNV 0.002 2 21 hm5C_associated_SNPs_1512 0 0 1 0 1 nucleus 1 0 1 1 hm5C_site_1512 DeepMRMD:1;iRNA_m5C:1 1513 chr19 58722937 58722937 1 + C A SKCM 58722937 + 58722917 58722957 41 ATGTTACAGGAGCCAGTGACCTTCCAGGATGTGGCTGTGGA ATGTTACAGGAGCCAGTGACATTCCAGGATGTGGCTGTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58722937 chr19:58722937 synonymous SNV . 0 21 hm5C_associated_SNPs_1513 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1513 DeepMRMD:1;iRNA_m5C:1 1514 chr12 132589002 132589002 1 + C T SKCM 132589002 + 132588982 132589022 41 GCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGCA GCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCCTCTGCAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589002 chr12:132589002 nonsynonymous SNV 0.436 3 21 hm5C_associated_SNPs_1514 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1514 DeepMRMD:1;iRNA_m5C:1 1515 chr19 11215952 11215952 1 + C T SKCM 11215952 + 11215932 11215972 41 ACGATGGGAAGTGCATCTCTCGGCAGTTCGTCTGTGACTCA ACGATGGGAAGTGCATCTCTTGGCAGTTCGTCTGTGACTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11215952 chr19:11215952 nonsynonymous SNV 0.002 3 21 hm5C_associated_SNPs_1515 2 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1515 DeepMRMD:1;iRNA_m5C:1 Familial hypercholesterolemia Familial hypercholesterolemia 1516 chr17 4926874 4926874 1 + C T SKCM 4926874 + 4926854 4926894 41 GCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGC GCATGCCGTCAGCCCGGCCCTCCTCGCCACCACTGTCAAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926874 chr17:4926874 nonsynonymous SNV 0.029 0 21 hm5C_associated_SNPs_1516 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1516 DeepMRMD:1;iRNA_m5C:1 1517 chr15 94841674 94841674 1 + C T SKCM 94841674 + 94841654 94841694 41 GATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCGGCC GATCTCCTGGAGGCTGAGGCTTTGGCCCCAGAGGGCCGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841674 chr15:94841674 synonymous SNV . 0 21 hm5C_associated_SNPs_1517 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1517 DeepMRMD:1;iRNA_m5C:1 1518 chr11 74329633 74329633 1 + C T SKCM 74329633 + 74329613 74329653 41 CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT CCTAGAGCTCCTGCTGAATCTTCTTCGTCTTCCAAAAAGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329633 chr11:74329633 synonymous SNV . 0 21 hm5C_associated_SNPs_1518 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1518 DeepMRMD:1;iRNA_m5C:1 1519 chr7 91714906 91714906 1 + C T SKCM 91714906 + 91714886 91714926 41 CCATTCTATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGA CCATTCTATTCAGCAGGTTTTAGAACCTTGGCTAGAAGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714906 chr7:91714906 nonsynonymous SNV 0.835 0 21 hm5C_associated_SNPs_1519 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1519 DeepMRMD:1;iRNA_m5C:1 1520 chr3 179341758 179341758 1 + C T SKCM 179341758 + 179341738 179341778 41 GCATGTGAGAGGAGATGGACCCTGGTATTACTATGAGACAA GCATGTGAGAGGAGATGGACTCTGGTATTACTATGAGACAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179341758 chr3:179341758 nonsynonymous SNV 0.681 3 21 hm5C_associated_SNPs_1520 0 0 1 3 0 Ribosome 1 0 1 1 hm5C_site_1520 DeepMRMD:1;iRNA_m5C:1 1521 chr7 73731903 73731903 1 + C T SKCM 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCTCCCGGCCGTGGGGGGAAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731903 synonymous SNV . 0 21 hm5C_associated_SNPs_1521 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_1521 DeepMRMD:1;iRNA_m5C:1 1522 chr8 68007774 68007774 1 + C T SKCM 68007774 + 68007754 68007794 41 AAGAAGTGGGCATTTCCAACCTAAAACATCAAAGGTTTGCA AAGAAGTGGGCATTTCCAACTTAAAACATCAAAGGTTTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68007774 chr8:68007774 synonymous SNV . 0 21 hm5C_associated_SNPs_1522 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1522 DeepMRMD:1;iRNA_m5C:1 1523 chr12 52695783 52695783 1 + C T SKCM 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA GCCCGGCCGCTGCTGCATCATCGCCGCCCCCTACCGTGGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695783 nonsynonymous SNV 0.097 2 21 hm5C_associated_SNPs_1523 0 0 0 0 1 nucleus 1 0 1 1 hm5C_site_1523 DeepMRMD:1;iRNA_m5C:1 1524 chr20 19981314 19981314 1 + C T SKCM 19981314 + 19981294 19981334 41 GTTGCACAGGAAAGACCCTCCTTGTGAGACCTTACATCACC GTTGCACAGGAAAGACCCTCTTTGTGAGACCTTACATCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19981314 chr20:19981314 nonsynonymous SNV 0.962 0 21 hm5C_associated_SNPs_1524 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1524 DeepMRMD:1;iRNA_m5C:1 1525 chr11 65338926 65338926 1 + C T SKCM 65338926 + 65338906 65338946 41 CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGC CTGGCCTCAGCCTCAGAGCTTCCCCTGGGCTCTCGACCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338926 chr11:65338926 synonymous SNV . 0 21 hm5C_associated_SNPs_1525 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1525 DeepMRMD:1;iRNA_m5C:1 1526 chr3 140140054 140140054 1 + C T SKCM 140140054 + 140140034 140140074 41 CTACGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG CTACGACTGTGGACAGAAGCTCGCTGCTCAGGACACCCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140140054 chr3:140140054 nonsynonymous SNV 0.847 1 21 hm5C_associated_SNPs_1526 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_1526 DeepMRMD:1;iRNA_m5C:1 1527 chr9 133761000 133761000 1 + C T SKCM 133761000 + 133760980 133761020 41 GGCGACAGCAGGCAGTGGTCCAGCGGCCACTCAGGACTTCA GGCGACAGCAGGCAGTGGTCTAGCGGCCACTCAGGACTTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133761000 chr9:133761000 nonsynonymous SNV 0.019 2 21 hm5C_associated_SNPs_1527 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1527 DeepMRMD:1;iRNA_m5C:1 1528 chr5 71648516 71648516 1 + C G SKCM 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACCTGATAAAGACTGTAAAAAATGCTGCAGAAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648516 nonsynonymous SNV 0.003 4 21 hm5C_associated_SNPs_1528 0 0 1 4 2 chromatin 1 0 1 1 hm5C_site_1528 DeepMRMD:1;iRNA_m5C:1 1529 chr1 22332214 22332214 1 + C T SKCM 22332214 + 22332194 22332234 41 CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCTTGCTGTGAAGGAGGGCCTCGAGCAGGTGATCCCCATCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332214 chr1:22332214 nonsynonymous SNV 0.944 1 21 hm5C_associated_SNPs_1529 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1529 DeepMRMD:1;iRNA_m5C:1 1530 chr20 44050042 44050042 1 + C T SKCM 44050042 + 44050022 44050062 41 GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACGT GAGGCCCCCCCAGTGCCCTTTCTGCATGCCCAGCGGTACGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44050042 chr20:44050042 synonymous SNV . 0 21 hm5C_associated_SNPs_1530 0 0 1 1 1 Ribosome 1 0 1 1 hm5C_site_1530 DeepMRMD:1;iRNA_m5C:1 1531 chr17 18143908 18143908 1 + C T SKCM 18143908 + 18143888 18143928 41 GCAGGGGCCCACCACGGGCCCACCATGTGGGCTGGCACCAA GCAGGGGCCCACCACGGGCCTACCATGTGGGCTGGCACCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143908 chr17:18143908 synonymous SNV . 0 21 hm5C_associated_SNPs_1531 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1531 DeepMRMD:1;iRNA_m5C:1 1532 chr8 145139185 145139185 1 + C T SKCM 145139185 + 145139165 145139205 41 CTTGACCTGCTCAATCTCTTCCAGACCTTCTGCCAGAAAGG CTTGACCTGCTCAATCTCTTTCAGACCTTCTGCCAGAAAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139185 chr8:145139185 synonymous SNV . 0 21 hm5C_associated_SNPs_1532 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1532 DeepMRMD:1;iRNA_m5C:1 1533 chr10 135000066 135000066 1 + C T SKCM 135000066 + 135000046 135000086 41 TTCACACCCCAGCCAGGGGCCAGCAGAGGCCCCTGCAGACC TTCACACCCCAGCCAGGGGCTAGCAGAGGCCCCTGCAGACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135000066 chr10:135000066 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_1533 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1533 DeepMRMD:1;iRNA_m5C:1 1534 chr14 102452896 102452896 1 + C T SKCM 102452896 + 102452876 102452916 41 AACCAGCTTTACCCGTTTGCCATCTCACTGATCGAGAGCGT AACCAGCTTTACCCGTTTGCTATCTCACTGATCGAGAGCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102452896 chr14:102452896 synonymous SNV . 0 21 hm5C_associated_SNPs_1534 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1534 DeepMRMD:1;iRNA_m5C:1 1535 chr3 183899730 183899730 1 + C T SKCM 183899730 + 183899710 183899750 41 ACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGT ACCAAGGACATCATCCTTCCTTTCCGGGTGATCCCGCTAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899730 chr3:183899730 synonymous SNV . 0 21 hm5C_associated_SNPs_1535 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1535 DeepMRMD:1;iRNA_m5C:1 1536 chr2 127453565 127453565 1 + C T SKCM 127453565 + 127453545 127453585 41 GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTACATGTA GTCCTAGTCTCCCTCCTCTTTGTCATGCTGCGCTACATGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GYPC ENSG00000136732 CDS Human protein_coding chr2:127453565 chr2:127453565 synonymous SNV . 0 21 hm5C_associated_SNPs_1536 0 0 1 2 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1536 DeepMRMD:1;iRNA_m5C:1 1537 chr7 142460392 142460392 1 + C T SKCM 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTCTGTGTGGGCTTCTTTGAGGGAGGCAAGGATTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460392 nonsynonymous SNV 0.068 5 21 hm5C_associated_SNPs_1537 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1537 DeepMRMD:1;iRNA_m5C:1 1538 chr15 79185883 79185883 1 + C T SKCM 79185883 + 79185863 79185903 41 ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCCAAGAA ATATTTTTGTCTTCATAGCTTTTTTATCTTCCTGCCAAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79185883 chr15:79185883 synonymous SNV . 0 21 hm5C_associated_SNPs_1538 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1538 DeepMRMD:1;iRNA_m5C:1 1539 chr14 65209911 65209911 1 + C T SKCM 65209911 + 65209891 65209931 41 ACCTTCAGCTGGCCCGACGTCCGTGAGCTCTGCTCCAAGTA ACCTTCAGCTGGCCCGACGTTCGTGAGCTCTGCTCCAAGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65209911 chr14:65209911 synonymous SNV . 0 21 hm5C_associated_SNPs_1539 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1539 DeepMRMD:1;iRNA_m5C:1 1540 chr8 145698760 145698760 1 + C T SKCM 145698760 + 145698740 145698780 41 GCTCTCGCGCCCGCAGAGGGCCTGCCCCTCTAGTCCTGGGT GCTCTCGCGCCCGCAGAGGGTCTGCCCCTCTAGTCCTGGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145698760 chr8:145698760 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_1540 0 0 0 0 0 nucleolus 1 0 1 1 hm5C_site_1540 DeepMRMD:1;iRNA_m5C:1 1541 chr19 10793360 10793360 1 + C T SKCM 10793360 + 10793340 10793380 41 CCACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAG CCACCCCTAGTGCGGCCTTTTCCTCAGATGCCACTGCCGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793360 chr19:10793360 nonsynonymous SNV 0.589 0 21 hm5C_associated_SNPs_1541 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1541 DeepMRMD:1;iRNA_m5C:1 1542 chrX 107834422 107834422 1 + C T SKCM 107834422 + 107834402 107834442 41 AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT AGCCTGGGGCTCCTGGGCTTTCAGGGCCTCCTGGCCCTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107834422 chrX:107834422 nonsynonymous SNV 0.982 2 21 hm5C_associated_SNPs_1542 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1542 DeepMRMD:1;iRNA_m5C:1 1543 chr1 104115858 104115858 1 + C T SKCM 104115858 + 104115838 104115878 41 AAAACTGGAAGTGGAGATATCGAGAACTACAATGATGCTAC AAAACTGGAAGTGGAGATATTGAGAACTACAATGATGCTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115858 chr1:104115858 synonymous SNV . 0 21 hm5C_associated_SNPs_1543 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1543 DeepMRMD:1;iRNA_m5C:1 1544 chr1 156756594 156756594 1 + C T SKCM 156756594 + 156756574 156756614 41 CCTGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTGC CCTGTTGTGGGCACCACAACTACCACTCCGTCGCCCTCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756594 chr1:156756594 synonymous SNV . 0 21 hm5C_associated_SNPs_1544 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1544 DeepMRMD:1;iRNA_m5C:1 1545 chr7 69583186 69583186 1 + C T SKCM 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTTCACCGGAGCAGCTCTCGGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583186 synonymous SNV . 0 21 hm5C_associated_SNPs_1545 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_1545 DeepMRMD:1;iRNA_m5C:1 1546 chr19 11145668 11145668 1 + C T SKCM 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TCATGGAGGAGGACGAGCTCTCCTCGTGGATCATCAAGGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145668 nonsynonymous SNV 0.260 5 21 hm5C_associated_SNPs_1546 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1546 DeepMRMD:1;iRNA_m5C:1 1547 chr10 73566026 73566026 1 + C T SKCM 73566026 + 73566006 73566046 41 GATGACAACGAACCCCTTTTCGTGAGGCCTCCAGTGAGCTT GATGACAACGAACCCCTTTTTGTGAGGCCTCCAGTGAGCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73566026 chr10:73566026 synonymous SNV . 0 21 hm5C_associated_SNPs_1547 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1547 DeepMRMD:1;iRNA_m5C:1 1548 chr1 156756596 156756596 1 + C T SKCM 156756596 + 156756576 156756616 41 TGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTGCTA TGTTGTGGGCACCACAACCATCACTCCGTCGCCCTCTGCTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756596 chr1:156756596 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1548 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1548 DeepMRMD:1;iRNA_m5C:1 1549 chr19 49404083 49404083 1 + C T SKCM 49404083 + 49404063 49404103 41 TCTGGGCCCCGAGGAACCCTCCTTCTGTTGCCGCTGCTGCT TCTGGGCCCCGAGGAACCCTTCTTCTGTTGCCGCTGCTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49404083 chr19:49404083 synonymous SNV . 0 21 hm5C_associated_SNPs_1549 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1549 DeepMRMD:1;iRNA_m5C:1 1550 chr1 44128686 44128686 1 + C T SKCM 44128686 + 44128666 44128706 41 CTTTGGCATGTGGAAGACATCCTTTGCTTGGCACACTGAAG CTTTGGCATGTGGAAGACATTCTTTGCTTGGCACACTGAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44128686 chr1:44128686 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1550 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1550 DeepMRMD:1;iRNA_m5C:1 1551 chr19 14030636 14030636 1 + C T SKCM 14030636 + 14030616 14030656 41 CGACTGGCCACCCAGGCTTCCCCCCAATCCAGGGCCTGGAG CGACTGGCCACCCAGGCTTCTCCCCAATCCAGGGCCTGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14030636 chr19:14030636 nonsynonymous SNV 0.960 4 21 hm5C_associated_SNPs_1551 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1551 DeepMRMD:1;iRNA_m5C:1 1552 chr1 109643093 109643093 1 + C T SKCM 109643093 + 109643073 109643113 41 GGGGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCT GGGGCGCTGTGCAGCGAGGCTCCTTAGGCGGCGGCCACGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643093 chr1:109643093 . . 0 21 hm5C_associated_SNPs_1552 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_1552 DeepMRMD:1;iRNA_m5C:1 1553 chr1 242030150 242030150 1 + C T SKCM 242030150 + 242030130 242030170 41 AGCCTGCCCATTCAAGAAGTCATAGTTGGGATGACAAAACA AGCCTGCCCATTCAAGAAGTTATAGTTGGGATGACAAAACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242030150 chr1:242030150 nonsynonymous SNV 0.939 0 21 hm5C_associated_SNPs_1553 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1553 DeepMRMD:1;iRNA_m5C:1 1554 chr20 330383 330383 1 + C T SKCM 330383 + 330363 330403 41 CGCTCCTACCTGCACCTCTTCTATGAGGACTGTGCAGGCAC CGCTCCTACCTGCACCTCTTTTATGAGGACTGTGCAGGCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330383 chr20:330383 synonymous SNV . 0 21 hm5C_associated_SNPs_1554 0 0 1 0 1 cytosol 1 0 1 1 hm5C_site_1554 DeepMRMD:1;iRNA_m5C:1 1555 chr10 129142002 129142002 1 + C T SKCM 129142002 + 129141982 129142022 41 AGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCAT AGTGCCAAGAGAGCCAAAATTCTTAACAAGTAAGTTCTCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129142002 chr10:129142002 synonymous SNV . 0 21 hm5C_associated_SNPs_1555 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_1555 DeepMRMD:1;iRNA_m5C:1 1556 chr7 150773192 150773192 1 + C T SKCM 150773192 + 150773172 150773212 41 TCCACAGCTGCCTCCCTGGCCTTCCCCTTCATCCTCATCCT TCCACAGCTGCCTCCCTGGCTTTCCCCTTCATCCTCATCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773192 chr7:150773192 synonymous SNV . 0 21 hm5C_associated_SNPs_1556 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1556 DeepMRMD:1;iRNA_m5C:1 1557 chr10 5963508 5963508 1 + C T SKCM 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CGGGTGACGGAAGGGGAATTTCCTTCAAGGATACATTTGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963508 synonymous SNV . 0 21 hm5C_associated_SNPs_1557 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1557 DeepMRMD:1;iRNA_m5C:1 1558 chr8 38899577 38899577 1 + C T SKCM 38899577 + 38899557 38899597 41 CTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG CTGATGAAGCCTATAGTGCTTCCTCCTGTGGTAATAAGTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899577 chr8:38899577 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1558 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1558 DeepMRMD:1;iRNA_m5C:1 1559 chr6 161470199 161470199 1 + C T SKCM 161470199 + 161470179 161470219 41 CAGATATTATTAATGAAATCCTTACTTTCAAAGTCGACTAT CAGATATTATTAATGAAATCTTTACTTTCAAAGTCGACTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161470199 chr6:161470199 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1559 0 0 1 1 0 Cytosol 1 0 1 1 hm5C_site_1559 DeepMRMD:1;iRNA_m5C:1 1560 chr19 42373237 42373237 1 + C T SKCM 42373237 + 42373217 42373257 41 AAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCT AAGAGTGTGGCCCGCCGGGTTCTCCAAGCCCTGGAGGGGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373237 chr19:42373237 synonymous SNV . 0 21 hm5C_associated_SNPs_1560 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1560 DeepMRMD:1;iRNA_m5C:1 1561 chr2 238944540 238944540 1 + C T SKCM 238944540 + 238944520 238944560 41 ATCTTTTGAATTTTGATGATCCACTGAATATTGAAGCTGCA ATCTTTTGAATTTTGATGATTCACTGAATATTGAAGCTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2F ENSG00000184182;ENSG00000258984 CDS Human other chr2:238944540 chr2:238944540 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1561 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1561 DeepMRMD:1;iRNA_m5C:1 1562 chr3 184039162 184039162 1 + C T SKCM 184039162 + 184039142 184039182 41 CCCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCA CCCAGCCTTCGTCGCCTTCTTCGACCCCATCACCATCCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039162 chr3:184039162 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1562 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1562 DeepMRMD:1;iRNA_m5C:1 1563 chr19 1037846 1037846 1 + C T SKCM 1037846 + 1037826 1037866 41 GCACCGGCGACTGCCCGGACCCGGGGGAGGTCCCTGAATAT GCACCGGCGACTGCCCGGACTCGGGGGAGGTCCCTGAATAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037846 chr19:1037846 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1563 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_1563 DeepMRMD:1;iRNA_m5C:1 1564 chr1 23236971 23236971 1 + C T SKCM 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACTGCAACCACCGGCCCAAGTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236971 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1564 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1564 DeepMRMD:1;iRNA_m5C:1 1565 chr3 45557701 45557701 1 + C T SKCM 45557701 + 45557681 45557721 41 GTTGTGGAGCAGTATGGGATCGACACGATTCGGCTCTACAT GTTGTGGAGCAGTATGGGATTGACACGATTCGGCTCTACAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45557701 chr3:45557701 synonymous SNV . 0 21 hm5C_associated_SNPs_1565 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1565 DeepMRMD:1;iRNA_m5C:1 1566 chr9 21859391 21859391 1 + C T SKCM 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATACCTCAGATAGGGTCTACAGAATGGTCAGAAACCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859391 synonymous SNV . 0 21 hm5C_associated_SNPs_1566 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1566 DeepMRMD:1;iRNA_m5C:1 1567 chr1 22332005 22332005 1 + C T SKCM 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTGCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22332005 synonymous SNV . 0 21 hm5C_associated_SNPs_1567 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1567 DeepMRMD:1;iRNA_m5C:1 1568 chr3 47041164 47041164 1 + C T SKCM 47041164 + 47041144 47041184 41 TGGCTGTGGTACAGCTGTCCCTCCAGGCTGACCTCAGCGTT TGGCTGTGGTACAGCTGTCCTTCCAGGCTGACCTCAGCGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041164 chr3:47041164 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_1568 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1568 DeepMRMD:1;iRNA_m5C:1 1569 chr7 154738116 154738116 1 + G A SKCM 154738116 - 154738096 154738136 41 GATGTTCACAATGCAGAGTTCGTTCTGACTGGAGTGCTCAC GATGTTCACAATGCAGAGTTTGTTCTGACTGGAGTGCTCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154738116 chr7:154738116 synonymous SNV . 0 21 hm5C_associated_SNPs_1569 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1569 DeepMRMD:1;iRNA_m5C:1 1570 chr22 39125543 39125543 1 + C T SKCM 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCGACGAAAAAGGGCCTCCTGACGAAACGAGACGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125543 nonsynonymous SNV 0.658 2 21 hm5C_associated_SNPs_1570 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1570 DeepMRMD:1;iRNA_m5C:1 1571 chr3 193361862 193361862 1 + C T SKCM 193361862 + 193361842 193361882 41 TCGTTTTGACCAAAGTAGACCTGGCAGAGAAAAATGTAGCC TCGTTTTGACCAAAGTAGACTTGGCAGAGAAAAATGTAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193361862 chr3:193361862 synonymous SNV . 0 21 hm5C_associated_SNPs_1571 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1571 DeepMRMD:1;iRNA_m5C:1 1572 chr7 157041160 157041160 1 + C T SKCM 157041160 + 157041140 157041180 41 GTGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA GTGGACATTCACCACCTCGCTTCCCTAGACCCTGAGGTGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157041160 chr7:157041160 synonymous SNV . 0 21 hm5C_associated_SNPs_1572 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1572 DeepMRMD:1;iRNA_m5C:1 1573 chr19 36216190 36216190 1 + C T SKCM 36216190 + 36216170 36216210 41 TCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG TCACCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216190 chr19:36216190 nonsynonymous SNV 0.837 4 21 hm5C_associated_SNPs_1573 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1573 DeepMRMD:1;iRNA_m5C:1 1574 chr17 73567066 73567066 1 + C T SKCM 73567066 + 73567046 73567086 41 GCCAAGGCTGAGCGGCCAGGCCTCCAGAACATGGAGCTGGC GCCAAGGCTGAGCGGCCAGGTCTCCAGAACATGGAGCTGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73567066 chr17:73567066 synonymous SNV . 0 21 hm5C_associated_SNPs_1574 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1574 DeepMRMD:1;iRNA_m5C:1 1575 chr5 132400719 132400719 1 + C T SKCM 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCGTTCAATTGGAGCAGCAGTTAAAAGCCAGGTAAAGTTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400719 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1575 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1575 DeepMRMD:1;iRNA_m5C:1 1576 chr11 67017891 67017891 1 + C T SKCM 67017891 + 67017871 67017911 41 GAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACGCTAC GAAAGCCAAGATCCGGGGATTGTACCTCACTGTCACGCTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67017891 chr11:67017891 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1576 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1576 DeepMRMD:1;iRNA_m5C:1 1577 chr3 127340602 127340602 1 + C T SKCM 127340602 + 127340582 127340622 41 ACCTGAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT ACCTGAAAAGGAAAATGATCTTGCAGCAGTTCTGAGGCCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127340602 chr3:127340602 synonymous SNV . 0 21 hm5C_associated_SNPs_1577 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1577 DeepMRMD:1;iRNA_m5C:1 1578 chr16 30081507 30081507 1 + C T SKCM 30081507 + 30081487 30081527 41 GGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCC GGGCTGCTGCCAGCGAGTCCTTCTTCGTCTCTAACCACGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081507 chr16:30081507 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1578 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1578 DeepMRMD:1;iRNA_m5C:1 1579 chr19 54652444 54652444 1 + C T SKCM 54652444 + 54652424 54652464 41 GCAGCCAGGCCTTGGGCCCCCCTTCCGGCCCCCACAACCCA GCAGCCAGGCCTTGGGCCCCTCTTCCGGCCCCCACAACCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54652444 chr19:54652444 nonsynonymous SNV 0.069 0 21 hm5C_associated_SNPs_1579 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1579 DeepMRMD:1;iRNA_m5C:1 1580 chr7 142459821 142459821 1 + C T SKCM 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTCTCTGCCCACCGCCCCTTCAGCCACTGGCACGAAGTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459821 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_1580 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1580 DeepMRMD:1;iRNA_m5C:1 1581 chr3 119198909 119198909 1 + C T SKCM 119198909 + 119198889 119198929 41 TTGTTGAAGACATCAGAGTACCATGATATCATGTATCCTGC TTGTTGAAGACATCAGAGTATCATGATATCATGTATCCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119198909 chr3:119198909 synonymous SNV . 0 21 hm5C_associated_SNPs_1581 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_1581 DeepMRMD:1;iRNA_m5C:1 1582 chr9 135942496 135942496 1 + C T SKCM 135942496 + 135942476 135942516 41 TGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGG TGGCTGAGAAGGTGGGTTGCTCTGTGGGTGATGCCGCCAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942496 chr9:135942496 nonsynonymous SNV 0.827 3 21 hm5C_associated_SNPs_1582 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1582 DeepMRMD:1;iRNA_m5C:1 1583 chr7 34125549 34125549 1 + C T SKCM 34125549 + 34125529 34125569 41 GAATCTTGGAGGGTGGAGTCCAATGAGTTCTGCAACAGACC GAATCTTGGAGGGTGGAGTCTAATGAGTTCTGCAACAGACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMPER ENSG00000164619 CDS Human protein_coding chr7:34125549 chr7:34125549 synonymous SNV . 0 21 hm5C_associated_SNPs_1583 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1583 DeepMRMD:1;iRNA_m5C:1 1584 chr12 109604784 109604784 1 + C T SKCM 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCACACGCTTTGGGGGGGATTGGGTCATCGAGAAGGTACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604784 nonsynonymous SNV 0.931 3 21 hm5C_associated_SNPs_1584 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1584 DeepMRMD:1;iRNA_m5C:1 1585 chr16 457472 457472 1 + C T SKCM 457472 + 457452 457492 41 GGCCGGCGCTGCCTCCCTCTCTCTATGGACGTCCGAGCGCC GGCCGGCGCTGCCTCCCTCTTTCTATGGACGTCCGAGCGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout DECR2 ENSG00000242612 CDS Human protein_coding chr16:457472 chr16:457472 synonymous SNV . 0 21 hm5C_associated_SNPs_1585 0 0 1 0 3 Cytosol 1 0 1 1 hm5C_site_1585 DeepMRMD:1;iRNA_m5C:1 1586 chr11 66812087 66812087 1 + C T SKCM 66812087 + 66812067 66812107 41 GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCT GCCGATGCTGTGGGGGAGATTCTGCTCTCCCTCAGCTACCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYT12 ENSG00000173227 CDS Human protein_coding chr11:66812087 chr11:66812087 synonymous SNV . 0 21 hm5C_associated_SNPs_1586 0 0 0 0 2 nucleolus 1 0 1 1 hm5C_site_1586 DeepMRMD:1;iRNA_m5C:1 1587 chr19 38572456 38572456 1 + C T SKCM 38572456 + 38572436 38572476 41 GGGCGTGCGCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGG GGGCGTGCGCGCAAGGGTGGTCGACTGGCCGCCCAAGCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572456 chr19:38572456 nonsynonymous SNV 0.910 5 21 hm5C_associated_SNPs_1587 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_1587 DeepMRMD:1;iRNA_m5C:1 1588 chr17 48562205 48562205 1 + C T SKCM 48562205 + 48562185 48562225 41 GGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACAA GGCAGCAGAGAACCCCCTCCTCTGTGCCAGGAGGATGACAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562205 chr17:48562205 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_1588 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_1588 DeepMRMD:1;iRNA_m5C:1 1589 chr4 154216623 154216623 1 + C T SKCM 154216623 + 154216603 154216643 41 AACGAGCTGGCCGACCAGGACTTCCCCTTGCACCCGCGGGA AACGAGCTGGCCGACCAGGATTTCCCCTTGCACCCGCGGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154216623 chr4:154216623 synonymous SNV . 0 21 hm5C_associated_SNPs_1589 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1589 DeepMRMD:1;iRNA_m5C:1 1590 chr3 124053164 124053164 1 + C T SKCM 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGGCCCCTGAGCCTTGGGAACTCCGAATCCCTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053164 nonsynonymous SNV 0.992 3 21 hm5C_associated_SNPs_1590 0 0 0 0 1 nucleoplasm 1 0 1 1 hm5C_site_1590 DeepMRMD:1;iRNA_m5C:1 1591 chr15 52356226 52356226 1 + C T SKCM 52356226 + 52356206 52356246 41 AAGAAGTACAAGTTGATCCCCGAAAATATTTGGATGGAGAT AAGAAGTACAAGTTGATCCCTGAAAATATTTGGATGGAGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356226 chr15:52356226 stopgain 1.000 1 21 hm5C_associated_SNPs_1591 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1591 DeepMRMD:1;iRNA_m5C:1 1592 chr5 139889228 139889228 1 + C G SKCM 139889228 + 139889208 139889248 41 ATTGGTTTAAACAGACGGGTCTTACCCCCTTGATGGAAGCA ATTGGTTTAAACAGACGGGTGTTACCCCCTTGATGGAAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139889228 chr5:139889228 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1592 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_1592 DeepMRMD:1;iRNA_m5C:1 1593 chr15 52356225 52356225 1 + C T SKCM 52356225 + 52356205 52356245 41 GAAGAAGTACAAGTTGATCCCCGAAAATATTTGGATGGAGA GAAGAAGTACAAGTTGATCCTCGAAAATATTTGGATGGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356225 chr15:52356225 synonymous SNV . 0 21 hm5C_associated_SNPs_1593 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1593 DeepMRMD:1;iRNA_m5C:1 1594 chr7 142458471 142458471 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458471 nonsynonymous SNV 0.908 4 21 hm5C_associated_SNPs_1594 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1594 DeepMRMD:1;iRNA_m5C:1 1595 chr17 4797353 4797353 1 + C T SKCM 4797353 + 4797333 4797373 41 AGGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACC AGGAGATCACCGGGACCCAGTCCCCATACGGGGGCGGCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797353 chr17:4797353 nonsynonymous SNV 0.958 0 21 hm5C_associated_SNPs_1595 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1595 DeepMRMD:1;iRNA_m5C:1 1596 chr5 54654434 54654434 1 + C G SKCM 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGTCTGGTGGTGCTGGAAGGAGAGGAATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654434 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_1596 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1596 DeepMRMD:1;iRNA_m5C:1 1597 chr15 44127344 44127344 1 + C A SKCM 44127344 + 44127324 44127364 41 TTTTGCTTCTCTTCAGTTGTCTGAGGTTTGTGTGGAGTCTA TTTTGCTTCTCTTCAGTTGTATGAGGTTTGTGTGGAGTCTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR76 ENSG00000092470 CDS Human protein_coding chr15:44127344 chr15:44127344 nonsynonymous SNV 0.990 0 21 hm5C_associated_SNPs_1597 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1597 DeepMRMD:1;iRNA_m5C:1 1598 chr1 153750649 153750649 1 + C T STAD 153750649 + 153750629 153750669 41 CATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTG CATCTCAGAGCAAGGCAGAATGTGGCCATAAGGTCCGGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750649 chr1:153750649 nonsynonymous SNV 0.125 0 21 hm5C_associated_SNPs_1598 0 0 0 0 1 nucleoplasm 1 0 1 1 hm5C_site_1598 DeepMRMD:1;iRNA_m5C:1 1599 chr12 53412624 53412624 1 + C T STAD 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATGACGATGTGTATAGGGTGCCTCCAATTGACCGTTCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412624 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_1599 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1599 DeepMRMD:1;iRNA_m5C:1 1600 chr7 73636001 73636001 1 + C T STAD 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGTGGTTCTCGAAGCCCCCAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636001 nonsynonymous SNV 0.028 0 21 hm5C_associated_SNPs_1600 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1600 DeepMRMD:1;iRNA_m5C:1 1601 chr20 25273229 25273229 1 + C T STAD 25273229 + 25273209 25273249 41 GGCCTGCGGGTGGAGGATGTCGAGGCCTTGGACCGGAAAGG GGCCTGCGGGTGGAGGATGTTGAGGCCTTGGACCGGAAAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PYGB ENSG00000100994 CDS Human protein_coding chr20:25273229 chr20:25273229 synonymous SNV . 0 21 hm5C_associated_SNPs_1601 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1601 DeepMRMD:1;iRNA_m5C:1 1602 chr15 63019352 63019352 1 + C T STAD 63019352 + 63019332 63019372 41 GCTCCTCCATGGCACAGCTGCTGACCTGTGCTGCTCAAGGC GCTCCTCCATGGCACAGCTGTTGACCTGTGCTGCTCAAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63019352 chr15:63019352 synonymous SNV . 0 21 hm5C_associated_SNPs_1602 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_1602 DeepMRMD:1;iRNA_m5C:1 1603 chr1 36028847 36028847 1 + C A STAD 36028847 + 36028827 36028867 41 CCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGG CCTGACCGTTGAAGATGGGCACCGGGAGATCCTGATCAAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028847 chr1:36028847 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1603 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1603 DeepMRMD:1;iRNA_m5C:1 1604 chr14 75265268 75265268 1 + C T STAD 75265268 + 75265248 75265288 41 TGGTGAGGCCTGGAAGCAGTCGGGAGAAAGTGCCAGGTGGT TGGTGAGGCCTGGAAGCAGTTGGGAGAAAGTGCCAGGTGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75265268 chr14:75265268 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1604 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1604 DeepMRMD:1;iRNA_m5C:1 1605 chr16 89783151 89783151 1 + C T STAD 89783151 + 89783131 89783171 41 GACCCACCAAGCTTGGCGGCCGTCGACTGGGCCCTCTCCAG GACCCACCAAGCTTGGCGGCTGTCGACTGGGCCCTCTCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS9D1 ENSG00000075399 CDS Human protein_coding chr16:89783151 chr16:89783151 synonymous SNV . 0 21 hm5C_associated_SNPs_1605 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1605 DeepMRMD:1;iRNA_m5C:1 1606 chr22 18209612 18209612 1 + C T STAD 18209612 + 18209592 18209632 41 GAGCTTACCTGTGTCACTGTCAGCTAGCCAGAGTTGGCACA GAGCTTACCTGTGTCACTGTTAGCTAGCCAGAGTTGGCACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCL2L13 ENSG00000099968 CDS Human protein_coding chr22:18209612 chr22:18209612 nonsynonymous SNV 0.871 4 21 hm5C_associated_SNPs_1606 0 0 1 1 0 Cytosol 1 0 1 1 hm5C_site_1606 DeepMRMD:1;iRNA_m5C:1 1607 chr4 54244047 54244047 1 + C T STAD 54244047 + 54244027 54244067 41 CGCCTAGTGTCGGAGCTGAGCGGCGGGACCGGAGGGGATGA CGCCTAGTGTCGGAGCTGAGTGGCGGGACCGGAGGGGATGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54244047 chr4:54244047 synonymous SNV . 0 21 hm5C_associated_SNPs_1607 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1607 DeepMRMD:1;iRNA_m5C:1 1608 chr1 158063221 158063221 1 + C T STAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACTGGCGCCGCAAAGGCAGTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063221 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_1608 0 0 1 0 2 cytosol 1 0 1 1 hm5C_site_1608 DeepMRMD:1;iRNA_m5C:1 1609 chr11 64802601 64802601 1 + C T STAD 64802601 + 64802581 64802621 41 GCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCC GCCACCCCCTCTGATCCCCATCCCGCCCCCTGATGACCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802601 chr11:64802601 nonsynonymous SNV 0.889 2 21 hm5C_associated_SNPs_1609 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1609 DeepMRMD:1;iRNA_m5C:1 1610 chr12 112229169 112229169 1 + C T STAD 112229169 + 112229149 112229189 41 TTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGA TTTGGCCCCACGGCTGGGGCTGCCATTGCCTCCCATGAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229169 chr12:112229169 synonymous SNV . 0 21 hm5C_associated_SNPs_1610 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1610 DeepMRMD:1;iRNA_m5C:1 1611 chr9 131830576 131830576 1 + C T STAD 131830576 + 131830556 131830596 41 CCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGAC CCTCGGTGCTCGCCGTCCTGTGGAACCGCTGGCTGTCAGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830576 chr9:131830576 nonsynonymous SNV 0.975 4 21 hm5C_associated_SNPs_1611 0 0 1 0 2 unknown 1 0 1 1 hm5C_site_1611 DeepMRMD:1;iRNA_m5C:1 1612 chrX 48759692 48759692 1 + C T STAD 48759692 + 48759672 48759712 41 AGAGAGAGCGAGACAGGGAACGGGATCGGGACCGCGGGTAT AGAGAGAGCGAGACAGGGAATGGGATCGGGACCGCGGGTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759692 chrX:48759692 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_1612 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1612 DeepMRMD:1;iRNA_m5C:1 1613 chr11 45948298 45948298 1 + C A STAD 45948298 + 45948278 45948318 41 CACAACTGGACGAGGAAGACCCCTGCTTTGAGTTCCGGCAG CACAACTGGACGAGGAAGACACCTGCTTTGAGTTCCGGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45948298 chr11:45948298 nonsynonymous SNV 0.038 0 21 hm5C_associated_SNPs_1613 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_1613 DeepMRMD:1;iRNA_m5C:1 1614 chr6 26045888 26045888 1 + C T STAD 26045888 + 26045868 26045908 41 AGGACTTCAAAACCGACCTGCGTTTCCAGAGCTCTGCGGTG AGGACTTCAAAACCGACCTGTGTTTCCAGAGCTCTGCGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H3C ENSG00000196532 CDS Human other chr6:26045888 chr6:26045888 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_1614 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1614 DeepMRMD:1;iRNA_m5C:1 1615 chr16 27761012 27761012 1 + C T STAD 27761012 + 27760992 27761032 41 GTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG GTGCCTTCGACCGCTCCCACTGGGGACGCATCTCCAACACG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27761012 chr16:27761012 nonsynonymous SNV 0.902 4 21 hm5C_associated_SNPs_1615 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_1615 DeepMRMD:1;iRNA_m5C:1 1616 chr11 64128952 64128952 1 + C A STAD 64128952 + 64128932 64128972 41 CCCTCCCAGAAAGAGCGGACCTTCTCCTTCTGTGGCACCAT CCCTCCCAGAAAGAGCGGACATTCTCCTTCTGTGGCACCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128952 chr11:64128952 synonymous SNV . 0 21 hm5C_associated_SNPs_1616 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1616 DeepMRMD:1;iRNA_m5C:1 1617 chr10 94822648 94822648 1 + C T STAD 94822648 + 94822628 94822668 41 CGCGCATCCTGCTGGGGTTGCGGCTGGACGAGGCGCAGTGC CGCGCATCCTGCTGGGGTTGTGGCTGGACGAGGCGCAGTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822648 chr10:94822648 nonsynonymous SNV 0.970 2 21 hm5C_associated_SNPs_1617 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1617 DeepMRMD:1;iRNA_m5C:1 1618 chr3 142422814 142422814 1 + C A STAD 142422814 + 142422794 142422834 41 GAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCT GAAGGGAATTCAACACTTACACTGGCATTGGTATGGCAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142422814 chr3:142422814 synonymous SNV . 0 21 hm5C_associated_SNPs_1618 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1618 DeepMRMD:1;iRNA_m5C:1 1619 chr1 180049727 180049727 1 + C G STAD 180049727 + 180049707 180049747 41 ATAGGACTGGAGGACAATGTCACCTGCCTATCAAGTCCCAT ATAGGACTGGAGGACAATGTGACCTGCCTATCAAGTCCCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180049727 chr1:180049727 nonsynonymous SNV 0.239 1 21 hm5C_associated_SNPs_1619 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1619 DeepMRMD:1;iRNA_m5C:1 1620 chr9 135942495 135942495 1 + C T STAD 135942495 + 135942475 135942515 41 GTGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAG GTGGCTGAGAAGGTGGGTTGTCCTGTGGGTGATGCCGCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942495 chr9:135942495 synonymous SNV . 0 21 hm5C_associated_SNPs_1620 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1620 DeepMRMD:1;iRNA_m5C:1 1621 chr7 87530094 87530094 1 + C T STAD 87530094 + 87530074 87530114 41 ATCAGAATCCAAACAGATGGCGATAAGTATGGTGGAACCTC ATCAGAATCCAAACAGATGGTGATAAGTATGGTGGAACCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530094 chr7:87530094 synonymous SNV . 0 21 hm5C_associated_SNPs_1621 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1621 DeepMRMD:1;iRNA_m5C:1 1622 chr21 45217944 45217944 1 + C T STAD 45217944 + 45217924 45217964 41 GAGGGTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTC GAGGGTGGTGAGCGTGGAGATGCGCTGTCCCAGAAGAGGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217944 chr21:45217944 synonymous SNV . 0 21 hm5C_associated_SNPs_1622 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1622 DeepMRMD:1;iRNA_m5C:1 1623 chr14 24707977 24707977 1 + C T STAD 24707977 + 24707957 24707997 41 GAATCCAATCTTCAGTGAGGCGTGCTAGACCTGAGCAGTTC GAATCCAATCTTCAGTGAGGTGTGCTAGACCTGAGCAGTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPR2 ENSG00000100938;ENSG00000100938 exonic;splicing Human other chr14:24707977 chr14:24707977 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_1623 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1623 DeepMRMD:1;iRNA_m5C:1 1624 chr16 89970558 89970558 1 + C T STAD 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCAGTGTGTGGCCCGACGCCAGCGTTTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970558 nonsynonymous SNV 0.134 4 21 hm5C_associated_SNPs_1624 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1624 DeepMRMD:1;iRNA_m5C:1 1625 chr3 33887074 33887074 1 + C T STAD 33887074 + 33887054 33887094 41 CCAGCAAAGACCATGCAGGGCAGTGAGGTAAGAAGGACACT CCAGCAAAGACCATGCAGGGTAGTGAGGTAAGAAGGACACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33887074 chr3:33887074 synonymous SNV . 0 21 hm5C_associated_SNPs_1625 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1625 DeepMRMD:1;iRNA_m5C:1 1626 chr9 103008902 103008902 1 + C T STAD 103008902 + 103008882 103008922 41 TCAAGTTTTCTTACAGGAAACGGTTAAAGTGTTTTTAAAAC TCAAGTTTTCTTACAGGAAATGGTTAAAGTGTTTTTAAAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103008902 chr9:103008902 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1626 0 0 0 0 2 chromatin 1 0 1 1 hm5C_site_1626 DeepMRMD:1;iRNA_m5C:1 1627 chr16 69352776 69352776 1 + C T STAD 69352776 + 69352756 69352796 41 GGTGGAACGACGTGGCCGGGCTGGAGGGGGCCAAGGAGGCC GGTGGAACGACGTGGCCGGGTTGGAGGGGGCCAAGGAGGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69352776 chr16:69352776 synonymous SNV . 0 21 hm5C_associated_SNPs_1627 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1627 DeepMRMD:1;iRNA_m5C:1 1628 chr20 42328453 42328453 1 + C T STAD 42328453 + 42328433 42328473 41 ACCATAAAGGAGGAGGAAAACAGTGAGGAGGAACTTGCAGC ACCATAAAGGAGGAGGAAAATAGTGAGGAGGAACTTGCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42328453 chr20:42328453 synonymous SNV . 0 21 hm5C_associated_SNPs_1628 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1628 DeepMRMD:1;iRNA_m5C:1 1629 chr5 71491945 71491945 1 + C T STAD 71491945 + 71491925 71491965 41 GTCGAGAAGCAGGGAGTAGACGACATTGAAAAATTTGAAGA GTCGAGAAGCAGGGAGTAGATGACATTGAAAAATTTGAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71491945 chr5:71491945 synonymous SNV . 0 21 hm5C_associated_SNPs_1629 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1629 DeepMRMD:1;iRNA_m5C:1 1630 chr17 79412070 79412070 1 + C T STAD 79412070 + 79412050 79412090 41 TGGACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGG TGGACCAGGCGTCACTGTGGTCCCCCATGTACGGGGGCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412070 chr17:79412070 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_1630 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_1630 DeepMRMD:1;iRNA_m5C:1 1631 chr19 15224376 15224376 1 + C T STAD 15224376 + 15224356 15224396 41 CCTGTCTCCCTTCAGATCCCCGCCTGCCCCGACAATCTCCA CCTGTCTCCCTTCAGATCCCTGCCTGCCCCGACAATCTCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15224376 chr19:15224376 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_1631 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1631 DeepMRMD:1;iRNA_m5C:1 1632 chr19 19605126 19605126 1 + C T STAD 19605126 + 19605106 19605146 41 ACAGGTTCTGTTGGGAGCACCGTGACCACCCCTCCCCCGCT ACAGGTTCTGTTGGGAGCACTGTGACCACCCCTCCCCCGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19605126 chr19:19605126 synonymous SNV . 0 21 hm5C_associated_SNPs_1632 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1632 DeepMRMD:1;iRNA_m5C:1 1633 chr12 121858092 121858092 1 + C T STAD 121858092 + 121858072 121858112 41 ACAGAAGATGATGATGACGACGATGATGAGGATGATGATGA ACAGAAGATGATGATGACGATGATGATGAGGATGATGATGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858092 chr12:121858092 synonymous SNV . 0 21 hm5C_associated_SNPs_1633 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1633 DeepMRMD:1;iRNA_m5C:1 1634 chr7 142460323 142460323 1 + C T STAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGTTGAGCCAGGCTAAGTGTGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460323 synonymous SNV . 0 21 hm5C_associated_SNPs_1634 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1634 DeepMRMD:1;iRNA_m5C:1 1635 chr2 132257787 132257787 1 + C T STAD 132257787 + 132257767 132257807 41 ATTGTTTCAGGAGCTGCACACCATCTTCCCATGGCTGGTAG ATTGTTTCAGGAGCTGCACATCATCTTCCCATGGCTGGTAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC150776 ENSG00000152117 ncRNA_exonic Human transcribed_processed_pseudogene chr2:132257787 chr2:132257787 . . 0 21 hm5C_associated_SNPs_1635 0 0 1 0 1 unknown 1 0 1 1 hm5C_site_1635 DeepMRMD:1;iRNA_m5C:1 1636 chr7 930607 930607 1 + C T STAD 930607 + 930587 930627 41 GTATCATTTTCTGCACTCAGCGGACGGGGAGGGCTGTGCCA GTATCATTTTCTGCACTCAGTGGACGGGGAGGGCTGTGCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GET4 ENSG00000239857 CDS Human protein_coding chr7:930607 chr7:930607 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_1636 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1636 DeepMRMD:1;iRNA_m5C:1 1637 chr12 132329865 132329865 1 + C T STAD 132329865 + 132329845 132329885 41 AGTACTTCTGGCGGCTGACGCGGGACCGGCACCTGGTGTCC AGTACTTCTGGCGGCTGACGTGGGACCGGCACCTGGTGTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132329865 chr12:132329865 nonsynonymous SNV 0.951 4 21 hm5C_associated_SNPs_1637 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1637 DeepMRMD:1;iRNA_m5C:1 1638 chr1 151020376 151020376 1 + C T STAD 151020376 + 151020356 151020396 41 CCTGCTGCTGAATCTGGGTCCCCGGGCGGCGGGGGCCCAAG CCTGCTGCTGAATCTGGGTCTCCGGGCGGCGGGGGCCCAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020376 chr1:151020376 nonsynonymous SNV 0.667 1 21 hm5C_associated_SNPs_1638 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1638 DeepMRMD:1;iRNA_m5C:1 1639 chr3 148559690 148559690 1 + C T STAD 148559690 + 148559670 148559710 41 GAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGA GAGTGGATTTCTCCTGCATTTTGCCAGTGGTTTGTAAGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559690 chr3:148559690 synonymous SNV . 0 21 hm5C_associated_SNPs_1639 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_1639 DeepMRMD:1;iRNA_m5C:1 1640 chr6 99283474 99283474 1 + C T STAD 99283474 + 99283454 99283494 41 ACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCGC ACACCAGCAGCCGCCGCCCCTGCCGCCCCCGCAGGGTCCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283474 chr6:99283474 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_1640 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1640 DeepMRMD:1;iRNA_m5C:1 1641 chr1 16261125 16261125 1 + C T STAD 16261125 + 16261105 16261145 41 GCCTGTGATCGACGATCGTCCGGCAGACGCGGGCTCAGGGG GCCTGTGATCGACGATCGTCTGGCAGACGCGGGCTCAGGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16261125 chr1:16261125 nonsynonymous SNV 0.070 1 21 hm5C_associated_SNPs_1641 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1641 DeepMRMD:1;iRNA_m5C:1 1642 chrX 70517705 70517705 1 + C T STAD 70517705 + 70517685 70517725 41 GGCAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGG GGCAGGAGGAAGAGCGCAGGTGCCGTGAAGAAGAGATGCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517705 chrX:70517705 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1642 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1642 DeepMRMD:1;iRNA_m5C:1 1643 chr10 115489196 115489196 1 + C T STAD 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGTCAGGCACTTTGAGTCTCAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489196 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1643 0 0 1 9 0 Ribosome 1 0 1 1 hm5C_site_1643 DeepMRMD:1;iRNA_m5C:1 1644 chr1 114483597 114483597 1 + C T STAD 114483597 + 114483577 114483617 41 AAGTCTTGGAGTTCCTAGGCCGGGGGACATTTGGACAGGTG AAGTCTTGGAGTTCCTAGGCTGGGGGACATTTGGACAGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114483597 chr1:114483597 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1644 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1644 DeepMRMD:1;iRNA_m5C:1 1645 chr19 10404989 10404989 1 + C T STAD 10404989 + 10404969 10405009 41 CAAAACAGTCGTCGTGAGCGCGGAGTGTGAGCGAGGCCCAG CAAAACAGTCGTCGTGAGCGTGGAGTGTGAGCGAGGCCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10404989 chr19:10404989 nonsynonymous SNV 0.988 0 21 hm5C_associated_SNPs_1645 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1645 DeepMRMD:1;iRNA_m5C:1 1646 chr15 99491899 99491899 1 + C T STAD 99491899 + 99491879 99491919 41 CTTCGCTTCGTCATGGAGGGCGGCCTTCTGGACAAGCCAGA CTTCGCTTCGTCATGGAGGGTGGCCTTCTGGACAAGCCAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491899 chr15:99491899 synonymous SNV . 0 21 hm5C_associated_SNPs_1646 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1646 DeepMRMD:1;iRNA_m5C:1 1647 chr22 32275660 32275660 1 + C T STAD 32275660 + 32275640 32275680 41 TCCTGCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGT TCCTGCCCTGGCTGCCTAGCTGGCCAGCCTCCTATGCAAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275660 chr22:32275660 nonsynonymous SNV 0.980 3 21 hm5C_associated_SNPs_1647 0 0 0 2 1 chromatin 1 0 1 1 hm5C_site_1647 DeepMRMD:1;iRNA_m5C:1 1648 chr8 143784759 143784759 1 + C T STAD 143784759 + 143784739 143784779 41 GCCATCCTCCTGCTGCTGGCCTCCATTGCAGCCGGCCTCAG GCCATCCTCCTGCTGCTGGCTTCCATTGCAGCCGGCCTCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143784759 chr8:143784759 synonymous SNV . 0 21 hm5C_associated_SNPs_1648 0 0 1 0 0 nucleus 1 0 1 1 hm5C_site_1648 DeepMRMD:1;iRNA_m5C:1 1649 chr1 228333243 228333243 1 + C T STAD 228333243 + 228333223 228333263 41 CCCAGGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAA CCCAGGCCTGTGGTGCTGAGTGGGCCTTCGGGAGCTGGGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333243 chr1:228333243 nonsynonymous SNV 0.320 0 21 hm5C_associated_SNPs_1649 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1649 DeepMRMD:1;iRNA_m5C:1 1650 chr17 41570095 41570095 1 + C T STAD 41570095 + 41570075 41570115 41 GTCGAAGCCGAGATCGAAACCGAGATCGAGACAGAGATAGG GTCGAAGCCGAGATCGAAACTGAGATCGAGACAGAGATAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570095 chr17:41570095 stopgain 0.634 1 21 hm5C_associated_SNPs_1650 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1650 DeepMRMD:1;iRNA_m5C:1 1651 chr5 177633848 177633848 1 + C A STAD 177633848 + 177633828 177633868 41 TGGGGGTCTGAATCCTGAAGCCACTGAGGAAAAGATCAGGG TGGGGGTCTGAATCCTGAAGACACTGAGGAAAAGATCAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633848 chr5:177633848 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1651 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1651 DeepMRMD:1;iRNA_m5C:1 1652 chr17 45748109 45748109 1 + C T STAD 45748109 + 45748089 45748129 41 GCTGCTTATGAAGCTGCAGACGTTGCTGATGATCAGGAAGA GCTGCTTATGAAGCTGCAGATGTTGCTGATGATCAGGAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45748109 chr17:45748109 synonymous SNV . 0 21 hm5C_associated_SNPs_1652 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1652 DeepMRMD:1;iRNA_m5C:1 1653 chr2 46607459 46607459 1 + C T STAD 46607459 + 46607439 46607479 41 GCCCCATCTGCCCCGAGGAGCGGCTCTTGGCGGAGAACCCA GCCCCATCTGCCCCGAGGAGTGGCTCTTGGCGGAGAACCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607459 chr2:46607459 nonsynonymous SNV 0.338 2 21 hm5C_associated_SNPs_1653 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1653 DeepMRMD:1;iRNA_m5C:1 1654 chr12 31244687 31244687 1 + C T STAD 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATCAGATGCTGCTGCATGTGGCCACTCGGCAGGCCGCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244687 nonsynonymous SNV 0.253 0 21 hm5C_associated_SNPs_1654 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1654 DeepMRMD:1;iRNA_m5C:1 1655 chr1 109642959 109642959 1 + C T STAD 109642959 + 109642939 109642979 41 GTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCCTC GTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642959 chr1:109642959 . . 0 21 hm5C_associated_SNPs_1655 0 0 1 4 0 unknown 1 0 1 1 hm5C_site_1655 DeepMRMD:1;iRNA_m5C:1 1656 chr5 68490522 68490522 1 + C T STAD 68490522 + 68490502 68490542 41 GCAAGAAAAGCAAATCGAAGCGTATGTTATATTTAAAAATT GCAAGAAAAGCAAATCGAAGTGTATGTTATATTTAAAAATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPH ENSG00000153044 CDS Human protein_coding chr5:68490522 chr5:68490522 nonsynonymous SNV 0.969 0 21 hm5C_associated_SNPs_1656 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_1656 DeepMRMD:1;iRNA_m5C:1 1657 chrX 129149555 129149555 1 + C T STAD 129149555 + 129149535 129149575 41 GACTGGGACCCTGGCACTGTCTGTTCAGCCTAGCGGTGGGG GACTGGGACCCTGGCACTGTTTGTTCAGCCTAGCGGTGGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129149555 chrX:129149555 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_1657 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1657 DeepMRMD:1;iRNA_m5C:1 1658 chr11 831623 831623 1 + C T STAD 831623 + 831603 831643 41 GGAAGGCTCTGACAACAGCCCGCCTGCCTGGGCCCACCTGC GGAAGGCTCTGACAACAGCCTGCCTGCCTGGGCCCACCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831623 chr11:831623 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_1658 0 0 1 1 1 Cytosol 1 0 1 1 hm5C_site_1658 DeepMRMD:1;iRNA_m5C:1 1659 chr5 139947624 139947624 1 + C T STAD 139947624 + 139947604 139947644 41 TCCTGCTCGCTGGTGGTCAACGCCGTGCTCTCAGCAGTCCT TCCTGCTCGCTGGTGGTCAATGCCGTGCTCTCAGCAGTCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC35A4 ENSG00000176087 CDS Human protein_coding chr5:139947624 chr5:139947624 synonymous SNV . 0 21 hm5C_associated_SNPs_1659 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1659 DeepMRMD:1;iRNA_m5C:1 1660 chr19 36216189 36216189 1 + C T STAD 36216189 + 36216169 36216209 41 CTCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT CTCACCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216189 chr19:36216189 synonymous SNV . 0 21 hm5C_associated_SNPs_1660 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1660 DeepMRMD:1;iRNA_m5C:1 1661 chr15 45353327 45353327 1 + C T STAD 45353327 + 45353307 45353347 41 ATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCC ATGAATTCTGCAAGATGGGCTGATACAATCTGTCACCTTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SORD ENSG00000140263 CDS Human protein_coding chr15:45353327 chr15:45353327 stopgain 0.933 1 21 hm5C_associated_SNPs_1661 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1661 DeepMRMD:1;iRNA_m5C:1 1662 chr11 14865490 14865490 1 + C T STAD 14865490 + 14865470 14865510 41 TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA TCCTGCATTAGAATTGATGGTTCTATACGTGGCAGCTGCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14865490 chr11:14865490 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1662 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1662 DeepMRMD:1;iRNA_m5C:1 1663 chr1 22307570 22307570 1 + C T STAD 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTACGATCGTGCTGTGAAGGAGGGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307570 synonymous SNV . 0 21 hm5C_associated_SNPs_1663 0 0 0 0 2 unknown 1 0 1 1 hm5C_site_1663 DeepMRMD:1;iRNA_m5C:1 1664 chr16 83948906 83948906 1 + C T STAD 83948906 + 83948886 83948926 41 AGAACGGGGCGGTGCTGTGGCGCATCAACTGGATGGCGGAT AGAACGGGGCGGTGCTGTGGTGCATCAACTGGATGGCGGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MLYCD ENSG00000103150 CDS Human protein_coding chr16:83948906 chr16:83948906 nonsynonymous SNV 0.975 5 21 hm5C_associated_SNPs_1664 0 0 0 0 0 nucleolus 1 0 1 1 hm5C_site_1664 DeepMRMD:1;iRNA_m5C:1 1665 chr6 4937916 4937916 1 + C T STAD 4937916 + 4937896 4937936 41 TTGACTTTATTTATTTTATACGACGTCTGACAGATGACAGG TTGACTTTATTTATTTTATATGACGTCTGACAGATGACAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4937916 chr6:4937916 stopgain 0.989 1 21 hm5C_associated_SNPs_1665 0 0 1 0 1 Cytoplasm 1 0 1 1 hm5C_site_1665 DeepMRMD:1;iRNA_m5C:1 1666 chr4 88036091 88036091 1 + C T STAD 88036091 + 88036071 88036111 41 GCGAAGGACAATGTGGAGGACAGGACCCCTGAGCACTTTGC GCGAAGGACAATGTGGAGGATAGGACCCCTGAGCACTTTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AFF1 ENSG00000172493 CDS Human protein_coding chr4:88036091 chr4:88036091 synonymous SNV . 0 21 hm5C_associated_SNPs_1666 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1666 DeepMRMD:1;iRNA_m5C:1 1667 chr7 2472943 2472943 1 + C T STAD 2472943 + 2472923 2472963 41 AACAAGTTCTGGCGCCGCTACGGGAAGCTCTCCCGCCACCT AACAAGTTCTGGCGCCGCTATGGGAAGCTCTCCCGCCACCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472943 chr7:2472943 synonymous SNV . 0 21 hm5C_associated_SNPs_1667 0 0 0 0 0 nucleolus 1 0 1 1 hm5C_site_1667 DeepMRMD:1;iRNA_m5C:1 1668 chr19 757482 757482 1 + C T STAD 757482 + 757462 757502 41 CCCCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGG CCCCGGCCCACCTCGGTCCATGCCCCTGGAGGAGAACGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757482 chr19:757482 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1668 0 0 0 0 0 nucleus 1 0 1 1 hm5C_site_1668 DeepMRMD:1;iRNA_m5C:1 1669 chrX 24086195 24086195 1 + C T STAD 24086195 + 24086175 24086215 41 TTTTTGCGGAGCATAATGATCTGCAATATGCTGCTCCAGGC TTTTTGCGGAGCATAATGATTTGCAATATGCTGCTCCAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EIF2S3 ENSG00000130741 CDS Human protein_coding chrX:24086195 chrX:24086195 synonymous SNV . 0 21 hm5C_associated_SNPs_1669 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1669 DeepMRMD:1;iRNA_m5C:1 1670 chr5 109155379 109155379 1 + C T STAD 109155379 + 109155359 109155399 41 ATCTTTTAAAGATCTCTTTTCGAGCACATATACCGCCATTG ATCTTTTAAAGATCTCTTTTTGAGCACATATACCGCCATTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109155379 chr5:109155379 stopgain 0.965 0 21 hm5C_associated_SNPs_1670 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1670 DeepMRMD:1;iRNA_m5C:1 1671 chr12 100732689 100732689 1 + C A STAD 100732689 + 100732669 100732709 41 ATGTCTGCCCTTAATAATCTCTTTGGCCCTCAGAAACCCAA ATGTCTGCCCTTAATAATCTATTTGGCCCTCAGAAACCCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732689 chr12:100732689 synonymous SNV . 0 21 hm5C_associated_SNPs_1671 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_1671 DeepMRMD:1;iRNA_m5C:1 1672 chrX 64936689 64936689 1 + C T STAD 64936689 + 64936669 64936709 41 TCTCATCCTAGATCAGTGTGCGTGTGACCACCATGGATGCA TCTCATCCTAGATCAGTGTGTGTGTGACCACCATGGATGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSN ENSG00000147065 CDS Human protein_coding chrX:64936689 chrX:64936689 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1672 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1672 DeepMRMD:1;iRNA_m5C:1 1673 chr10 75871668 75871668 1 + C T STAD 75871668 + 75871648 75871688 41 CTTCCCGCCATCGACAAAGCCGGGCATCCCAGCCGCTGAGG CTTCCCGCCATCGACAAAGCTGGGCATCCCAGCCGCTGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871668 chr10:75871668 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1673 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1673 DeepMRMD:1;iRNA_m5C:1 1674 chr14 93119189 93119189 1 + C T STAD 93119189 + 93119169 93119209 41 ACGCTTTCCTCTCCAACAACCGCAAGCTGTACAAGAAGGTG ACGCTTTCCTCTCCAACAACTGCAAGCTGTACAAGAAGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93119189 chr14:93119189 nonsynonymous SNV 0.697 4 21 hm5C_associated_SNPs_1674 0 0 1 0 0 cytosol 1 0 1 1 hm5C_site_1674 DeepMRMD:1;iRNA_m5C:1 1675 chr3 49212180 49212180 1 + C T STAD 49212180 + 49212160 49212200 41 CAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGTG CAATTCCATTGACAGGGGGCTGCCAGGGCAAGCTCCCGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212180 chr3:49212180 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1675 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1675 DeepMRMD:1;iRNA_m5C:1 1676 chr16 28884771 28884771 1 + C T STAD 28884771 + 28884751 28884791 41 TTACCATTCCTATCCAGAACCGACCACCTCCCATGACCCAC TTACCATTCCTATCCAGAACTGACCACCTCCCATGACCCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28884771 chr16:28884771 nonsynonymous SNV 0.982 0 21 hm5C_associated_SNPs_1676 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1676 DeepMRMD:1;iRNA_m5C:1 1677 chr6 29911960 29911960 1 + C A STAD 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAGGCCACCCTGAGGTGATGGGCCCTGGGCTTCTACCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911960 stopgain 0.096 0 21 hm5C_associated_SNPs_1677 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1677 DeepMRMD:1;iRNA_m5C:1 1678 chr11 61404325 61404325 1 + C T STAD 61404325 + 61404305 61404345 41 GTGGTGCTGATGGGCAAGAACGCCATGACGCGCAAGGCCAT GTGGTGCTGATGGGCAAGAATGCCATGACGCGCAAGGCCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404325 chr11:61404325 . . 0 21 hm5C_associated_SNPs_1678 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_1678 DeepMRMD:1;iRNA_m5C:1 1679 chr3 52011901 52011901 1 + C A STAD 52011901 + 52011881 52011921 41 CTCCAGACTGTGGTACAGACCTCCATGAGCCGGTCCCAGGT CTCCAGACTGTGGTACAGACATCCATGAGCCGGTCCCAGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control ABHD14A ENSG00000114786;ENSG00000248487 CDS Human other chr3:52011901 chr3:52011901 synonymous SNV . 0 21 hm5C_associated_SNPs_1679 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1679 DeepMRMD:1;iRNA_m5C:1 1680 chr10 17277192 17277192 1 + C T STAD 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTCCCTGGAACGCCAGATGTGTGAAATGGAAGAGAACTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277192 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_1680 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1680 DeepMRMD:1;iRNA_m5C:1 1681 chrX 53112245 53112245 1 + C T STAD 53112245 + 53112225 53112265 41 GTATGAGGAGCAGCAGGAGGCGGCGGCGGCGGCGGAGGAGG GTATGAGGAGCAGCAGGAGGTGGCGGCGGCGGCGGAGGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53112245 chrX:53112245 nonsynonymous SNV 0.384 2 21 hm5C_associated_SNPs_1681 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_1681 DeepMRMD:1;iRNA_m5C:1 1682 chr11 67018208 67018208 1 + C T STAD 67018208 + 67018188 67018228 41 AGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAGAGAA AGGTCTGGATGTCTGTCTTCTGCTACCTCAGCCGCAGAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67018208 chr11:67018208 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1682 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1682 DeepMRMD:1;iRNA_m5C:1 1683 chr17 7160303 7160303 1 + C A STAD 7160303 + 7160283 7160323 41 ACCCTGGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCT ACCCTGGGCGGTACCATGGGACAGGCCTCGGCCCACATCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160303 chr17:7160303 synonymous SNV . 0 21 hm5C_associated_SNPs_1683 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1683 DeepMRMD:1;iRNA_m5C:1 1684 chr19 55994334 55994334 1 + C T STAD 55994334 + 55994314 55994354 41 AGCGCGTGCACACGGGCGAGCGGCCCTTCCGCTGCCCGCTC AGCGCGTGCACACGGGCGAGTGGCCCTTCCGCTGCCCGCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF628 ENSG00000197483 CDS Human protein_coding chr19:55994334 chr19:55994334 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_1684 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1684 DeepMRMD:1;iRNA_m5C:1 1685 chr11 65978630 65978630 1 + C T STAD 65978630 + 65978610 65978650 41 TCATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGC TCATTTCCTTAAGCGAGATGTCAACAAGCTGCAGATCATGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978630 chr11:65978630 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1685 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1685 DeepMRMD:1;iRNA_m5C:1 1686 chr17 15929902 15929902 1 + C T STAD 15929902 + 15929882 15929922 41 CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATATT CTACCCTGGATGCACAGGGCTGCTTTGATGAGGCCTATATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15929902 chr17:15929902 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_1686 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1686 DeepMRMD:1;iRNA_m5C:1 1687 chr19 46519595 46519595 1 + C T STAD 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCGCTTTGACCCCACGGCCTTTGTGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519595 synonymous SNV . 0 21 hm5C_associated_SNPs_1687 0 0 0 0 2 chromatin 1 0 1 1 hm5C_site_1687 DeepMRMD:1;iRNA_m5C:1 1688 chr22 46681140 46681140 1 + C T STAD 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGTGAATATGAGGCCGCGCTGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681140 synonymous SNV . 0 21 hm5C_associated_SNPs_1688 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1688 DeepMRMD:1;iRNA_m5C:1 1689 chr11 45891339 45891339 1 + C T STAD 45891339 + 45891319 45891359 41 GCTTCCTGACCCGCGGGGACCTCTGGGTCAGCTGGGAGAGC GCTTCCTGACCCGCGGGGACTTCTGGGTCAGCTGGGAGAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45891339 chr11:45891339 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1689 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1689 DeepMRMD:1;iRNA_m5C:1 1690 chr9 114429191 114429191 1 + C T STAD 114429191 + 114429171 114429211 41 CAGCTGGAAGTAACCCCTTCCGGGAGCCTAGATCCTGTGCT CAGCTGGAAGTAACCCCTTCTGGGAGCCTAGATCCTGTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC25-GNG10;GNG10 ENSG00000059769;ENSG00000242616;ENSG00000244115 CDS Human other chr9:114429191 chr9:114429191 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1690 0 0 0 0 2 unknown 1 0 1 1 hm5C_site_1690 DeepMRMD:1;iRNA_m5C:1 1691 chr11 598413 598413 1 + C T STAD 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG GTCTTCCCTGCTGGATGAAGTCATCGAGGCTGTGGCGACTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598413 nonsynonymous SNV 0.042 0 21 hm5C_associated_SNPs_1691 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1691 DeepMRMD:1;iRNA_m5C:1 1692 chr18 19209067 19209067 1 + C T STAD 19209067 + 19209047 19209087 41 GAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGAGGGGGT GAAGAGGAAGAGGACGTGGCTGTGGCAGAGGAAGAGGGGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209067 chr18:19209067 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_1692 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1692 DeepMRMD:1;iRNA_m5C:1 1693 chr12 53428436 53428436 1 + C T STAD 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACGGGAATGGTCGAGGACAGGAAGTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428436 nonsynonymous SNV 0.993 3 21 hm5C_associated_SNPs_1693 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1693 DeepMRMD:1;iRNA_m5C:1 1694 chr6 116747964 116747964 1 + C T STAD 116747964 + 116747944 116747984 41 CAACTGTATGGCTTTGCTCACGGGAAGCCTAGTCCTGATGA CAACTGTATGGCTTTGCTCATGGGAAGCCTAGTCCTGATGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DSE ENSG00000111817 CDS Human protein_coding chr6:116747964 chr6:116747964 nonsynonymous SNV 0.822 3 21 hm5C_associated_SNPs_1694 0 0 1 0 0 nucleolus 1 0 1 1 hm5C_site_1694 DeepMRMD:1;iRNA_m5C:1 1695 chr8 9620699 9620699 1 + C T STAD 9620699 + 9620679 9620719 41 TCACTGTGTTAATCAGGGAACGATTTTGCTGGATCTTGCTC TCACTGTGTTAATCAGGGAATGATTTTGCTGGATCTTGCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9620699 chr8:9620699 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_1695 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1695 DeepMRMD:1;iRNA_m5C:1 1696 chr19 18966037 18966037 1 + C T STAD 18966037 + 18966017 18966057 41 ACCATCGTCTACCACCTGGCCCGGCAAGGCAACGGGTAGGG ACCATCGTCTACCACCTGGCTCGGCAAGGCAACGGGTAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966037 chr19:18966037 synonymous SNV . 0 21 hm5C_associated_SNPs_1696 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1696 DeepMRMD:1;iRNA_m5C:1 1697 chr8 9564436 9564436 1 + C T STAD 9564436 + 9564416 9564456 41 TAGCCATGGCGCTGATCCTACATTAGTCAACTGCCATGGCA TAGCCATGGCGCTGATCCTATATTAGTCAACTGCCATGGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9564436 chr8:9564436 nonsynonymous SNV 0.203 4 21 hm5C_associated_SNPs_1697 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1697 DeepMRMD:1;iRNA_m5C:1 1698 chr19 579629 579629 1 + C T STAD 579629 + 579609 579649 41 CGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG CGTGGTGCTGAAGGAGGACGTGCTGCCCGGCCAGAAAACGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579629 chr19:579629 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1698 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1698 DeepMRMD:1;iRNA_m5C:1 1699 chr17 37359334 37359334 1 + C T STAD 37359334 + 37359314 37359354 41 GCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGAT GCCGGCTGCTCAGAAGATACTGTGAATCTAAGAAGATCGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359334 chr17:37359334 nonsynonymous SNV 0.308 1 21 hm5C_associated_SNPs_1699 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1699 DeepMRMD:1;iRNA_m5C:1 1700 chr1 214794185 214794185 1 + C A STAD 214794185 + 214794165 214794205 41 TGGGGAACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAA TGGGGAACAAGAGGTGACTCAAAGTCGATCAACTTTGCAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794185 chr1:214794185 nonsynonymous SNV 0.009 3 21 hm5C_associated_SNPs_1700 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1700 DeepMRMD:1;iRNA_m5C:1 1701 chr17 4701676 4701676 1 + C T STAD 4701676 + 4701656 4701696 41 GGCAAGTACTTTTGGGAGACCAGATACCCAAATTCGCCGTT GGCAAGTACTTTTGGGAGACTAGATACCCAAATTCGCCGTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701676 chr17:4701676 stopgain 1.000 1 21 hm5C_associated_SNPs_1701 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1701 DeepMRMD:1;iRNA_m5C:1 1702 chr5 167719173 167719173 1 + C T TGCT 167719173 + 167719153 167719193 41 GGAAGATGCCCCGGCCGGAGCTGCCCCTGCCGGAGGGCTGG GGAAGATGCCCCGGCCGGAGTTGCCCCTGCCGGAGGGCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167719173 chr5:167719173 synonymous SNV . 0 21 hm5C_associated_SNPs_1702 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1702 DeepMRMD:1;iRNA_m5C:1 1703 chr9 135946966 135946966 1 + C A TGCT 135946966 + 135946946 135946986 41 ACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGG ACTCCGGCGCCCCCCCCGTGACGCCCACGGGTGACTCCGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946966 chr9:135946966 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_1703 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1703 DeepMRMD:1;iRNA_m5C:1 1704 chr8 145583775 145583775 1 + C A TGCT 145583775 + 145583755 145583795 41 TGCCCTTCTGGTCGCTTCAGCTGCTGCCTTCCAGGGTCTTC TGCCCTTCTGGTCGCTTCAGATGCTGCCTTCCAGGGTCTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145583775 chr8:145583775 nonsynonymous SNV 0.026 4 21 hm5C_associated_SNPs_1704 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1704 DeepMRMD:1;iRNA_m5C:1 1705 chr1 161326622 161326622 1 + C A THCA 161326622 + 161326602 161326642 41 ATCATACCTGGAATGGGATCCGACACTTGGTAAGTTAATTC ATCATACCTGGAATGGGATCAGACACTTGGTAAGTTAATTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHC ENSG00000143252 CDS Human protein_coding chr1:161326622 chr1:161326622 synonymous SNV . 0 21 hm5C_associated_SNPs_1705 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1705 DeepMRMD:1;iRNA_m5C:1 1706 chr16 81078069 81078069 1 + C G THCA 81078069 + 81078049 81078089 41 CTCAAACTGAAGAGAGTGAACTTAGCACCATGACCACCGAG CTCAAACTGAAGAGAGTGAAGTTAGCACCATGACCACCGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81078069 chr16:81078069 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1706 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1706 DeepMRMD:1;iRNA_m5C:1 1707 chrX 84502590 84502590 1 + C T THCA 84502590 + 84502570 84502610 41 TTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCA TTGCTAAGTATGGATTCAGGTGGTGGAAGTCTTGGATTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502590 chrX:84502590 synonymous SNV . 0 21 hm5C_associated_SNPs_1707 0 0 1 0 2 cytosol 1 0 1 1 hm5C_site_1707 DeepMRMD:1;iRNA_m5C:1 1708 chr5 134130604 134130604 1 + C A THCA 134130604 + 134130584 134130624 41 TATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGG TATGTTTTCAGCTACTTTCCACAGAGCTATGGAGGCTTTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130604 chr5:134130604 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1708 0 0 1 2 1 Cytosol 1 0 1 1 hm5C_site_1708 DeepMRMD:1;iRNA_m5C:1 1709 chr7 98501140 98501140 1 + C A THCA 98501140 + 98501120 98501160 41 TCACCACAGAGCTGAGAAACCGTACGTCCAGCCTGTCTTGT TCACCACAGAGCTGAGAAACAGTACGTCCAGCCTGTCTTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98501140 chr7:98501140 nonsynonymous SNV 0.964 1 21 hm5C_associated_SNPs_1709 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1709 DeepMRMD:1;iRNA_m5C:1 1710 chr1 163042250 163042250 1 + C A THCA 163042250 + 163042230 163042270 41 TGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA TGATTCCTGTGAACACAATTATTCCCACAACAAGAAGGACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RGS4 ENSG00000117152 CDS Human protein_coding chr1:163042250 chr1:163042250 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1710 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_1710 DeepMRMD:1;iRNA_m5C:1 1711 chr6 32135285 32135285 1 + C T THCA 32135285 + 32135265 32135305 41 TCTCTTCCTTTCTAGTGGGCCGGTCAGGCTGGGGCCTGGGT TCTCTTCCTTTCTAGTGGGCTGGTCAGGCTGGGGCCTGGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32135285 chr6:32135285 synonymous SNV . 0 21 hm5C_associated_SNPs_1711 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1711 DeepMRMD:1;iRNA_m5C:1 1712 chr13 27216438 27216438 1 + C A THCA 27216438 + 27216418 27216458 41 TGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCT TGAAGAGGAACATTGAGCCCAGGCACTTGTGCCGGGGAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216438 chr13:27216438 synonymous SNV . 0 21 hm5C_associated_SNPs_1712 0 0 1 0 1 cytosol 1 0 1 1 hm5C_site_1712 DeepMRMD:1;iRNA_m5C:1 1713 chr11 64055914 64055914 1 + C T THYM 64055914 + 64055894 64055934 41 CCCTGCTGGTGGGCTTCTTCCGGGTGCACCGGCCCCCACAG CCCTGCTGGTGGGCTTCTTCTGGGTGCACCGGCCCCCACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR137 ENSG00000173264 CDS Human protein_coding chr11:64055914 chr11:64055914 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_1713 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1713 DeepMRMD:1;iRNA_m5C:1 1714 chr10 134165250 134165250 1 + C T THYM 134165250 + 134165230 134165270 41 AGCAGGCTCTGATGGAGCAGCAGAGACGGTGAGTCCACACA AGCAGGCTCTGATGGAGCAGTAGAGACGGTGAGTCCACACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRRC27 ENSG00000148814 CDS Human protein_coding chr10:134165250 chr10:134165250 stopgain 0.074 0 21 hm5C_associated_SNPs_1714 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1714 DeepMRMD:1;iRNA_m5C:1 1715 chr15 93528742 93528742 1 + C T THYM 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCAGACAAATGATAGTGACTCTGACACTGAGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528742 synonymous SNV . 0 21 hm5C_associated_SNPs_1715 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1715 DeepMRMD:1;iRNA_m5C:1 1716 chr7 99047906 99047906 1 + C T THYM 99047906 + 99047886 99047926 41 AGTTTCCCTGCAGGGGAGTGCAGCAACAAGGAATGTCCCTT AGTTTCCCTGCAGGGGAGTGTAGCAACAAGGAATGTCCCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99047906 chr7:99047906 synonymous SNV . 0 21 hm5C_associated_SNPs_1716 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1716 DeepMRMD:1;iRNA_m5C:1 1717 chr3 40353054 40353054 1 + C A UCEC 40353054 + 40353034 40353074 41 GAAAAAACATCTGCCAGTTTCTCTTGGAGGTGAGTGATTGG GAAAAAACATCTGCCAGTTTATCTTGGAGGTGAGTGATTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF1B ENSG00000114784 CDS Human protein_coding chr3:40353054 chr3:40353054 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1717 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1717 DeepMRMD:1;iRNA_m5C:1 1718 chr12 6639957 6639957 1 + C T UCEC 6639957 + 6639937 6639977 41 CCAAGCAGGTAGCCAGAGAGCGCCATCAGCCAAGAAACCAT CCAAGCAGGTAGCCAGAGAGTGCCATCAGCCAAGAAACCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6639957 chr12:6639957 nonsynonymous SNV 0.186 1 21 hm5C_associated_SNPs_1718 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1718 DeepMRMD:1;iRNA_m5C:1 1719 chr17 57287568 57287568 1 + C A UCEC 57287568 + 57287548 57287588 41 GAGATCTGCGTTGTGGGAATCTTCGGCAAGACGGCTCTACG GAGATCTGCGTTGTGGGAATATTCGGCAAGACGGCTCTACG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMG8 ENSG00000167447 CDS Human protein_coding chr17:57287568 chr17:57287568 synonymous SNV . 0 21 hm5C_associated_SNPs_1719 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_1719 DeepMRMD:1;iRNA_m5C:1 1720 chr9 135946620 135946620 1 + C T UCEC 135946620 + 135946600 135946640 41 GTGCCCCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCC GTGCCCCCCACGGGTGACTCTGAGACCGCCCCCGTGCCGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946620 chr9:135946620 synonymous SNV . 0 21 hm5C_associated_SNPs_1720 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1720 DeepMRMD:1;iRNA_m5C:1 1721 chr2 177015070 177015070 1 + C T UCEC 177015070 + 177015050 177015090 41 CTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCGTA CTATATATACCCTGTAGAACTGAATTTGTGTGGTATCCGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015070 chr2:177015070 . . 0 21 hm5C_associated_SNPs_1721 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_1721 DeepMRMD:1;iRNA_m5C:1 1722 chr1 120286511 120286511 1 + C T UCEC 120286511 + 120286491 120286531 41 AGTTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTG AGTTTCTTCTATTTCCAGGCTTCCTGGCAGAGGCAGGCGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286511 chr1:120286511 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1722 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1722 DeepMRMD:1;iRNA_m5C:1 1723 chr10 118313334 118313334 1 + C A UCEC 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACAATTGGACGCATCACAGGTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313334 synonymous SNV . 0 21 hm5C_associated_SNPs_1723 0 0 0 0 2 unknown 1 0 1 1 hm5C_site_1723 DeepMRMD:1;iRNA_m5C:1 1724 chr20 43052674 43052674 1 + C T UCEC 43052674 + 43052654 43052694 41 GTAGATGCCAAGGGGCTGAGCGATCCAGGGAAGATCAAGCG GTAGATGCCAAGGGGCTGAGTGATCCAGGGAAGATCAAGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNF4A ENSG00000101076 CDS Human protein_coding chr20:43052674 chr20:43052674 synonymous SNV . 0 21 hm5C_associated_SNPs_1724 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1724 DeepMRMD:1;iRNA_m5C:1 1725 chr12 104378675 104378675 1 + C T UCEC 104378675 + 104378655 104378695 41 CGTTCAAGAGGTGCAATATACATTTGACCTACAGCTTGCCC CGTTCAAGAGGTGCAATATATATTTGACCTACAGCTTGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TDG ENSG00000139372 CDS Human protein_coding chr12:104378675 chr12:104378675 nonsynonymous SNV 0.985 3 21 hm5C_associated_SNPs_1725 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1725 DeepMRMD:1;iRNA_m5C:1 1726 chr1 154317162 154317162 1 + C T UCEC 154317162 + 154317142 154317182 41 TCATCCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA TCATCCCGCTCCGTAGGCAATGGCTTCACCTATCAGGACAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317162 chr1:154317162 synonymous SNV . 0 21 hm5C_associated_SNPs_1726 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1726 DeepMRMD:1;iRNA_m5C:1 1727 chr10 71146158 71146158 1 + C T UCEC 71146158 + 71146138 71146178 41 AGTCACCTTACTAAGGGATGCGATAAAAAGGAGAGAGGTAA AGTCACCTTACTAAGGGATGTGATAAAAAGGAGAGAGGTAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71146158 chr10:71146158 nonsynonymous SNV 0.509 5 21 hm5C_associated_SNPs_1727 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1727 DeepMRMD:1;iRNA_m5C:1 1728 chr11 108205739 108205739 1 + C A UCEC 108205739 + 108205719 108205759 41 AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTCGCT AAATCTGGTGACTATACAGTAATTTAAAGCAGAATTTCGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108205739 chr11:108205739 stopgain 0.987 1 21 hm5C_associated_SNPs_1728 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1728 DeepMRMD:1;iRNA_m5C:1 1729 chr1 150280549 150280549 1 + C T UCEC 150280549 + 150280529 150280569 41 ATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT ATTATGAGAAGCCATGCCGCTGGCGACAGAGGGAAAGCTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280549 chr1:150280549 nonsynonymous SNV 0.618 1 21 hm5C_associated_SNPs_1729 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1729 DeepMRMD:1;iRNA_m5C:1 1730 chr2 102441795 102441795 1 + C T UCEC 102441795 + 102441775 102441815 41 CTATAGCTTGTTATGGAGTTCTGTGGGGCTGGGTCCATTAC CTATAGCTTGTTATGGAGTTTTGTGGGGCTGGGTCCATTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102441795 chr2:102441795 synonymous SNV . 0 21 hm5C_associated_SNPs_1730 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1730 DeepMRMD:1;iRNA_m5C:1 1731 chrX 7171312 7171312 1 + C A UCEC 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAACATAATCCTGGTGATGGCTGACGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171312 synonymous SNV . 0 21 hm5C_associated_SNPs_1731 0 0 1 2 1 Cytosol 1 0 1 1 hm5C_site_1731 DeepMRMD:1;iRNA_m5C:1 1732 chr3 101311550 101311550 1 + C T UCEC 101311550 + 101311530 101311570 41 ATAACCAGAAGCTGTGGGAGCGAAATATAAAATCTCATCTT ATAACCAGAAGCTGTGGGAGTGAAATATAAAATCTCATCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNP ENSG00000081154 CDS Human protein_coding chr3:101311550 chr3:101311550 stopgain 1.000 1 21 hm5C_associated_SNPs_1732 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1732 DeepMRMD:1;iRNA_m5C:1 1733 chr19 49878063 49878063 1 + C A UCEC 49878063 + 49878043 49878083 41 CTCCATCCCCGGGTGGCCTTCTGGATCATTAAGCTGCCACG CTCCATCCCCGGGTGGCCTTATGGATCATTAAGCTGCCACG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49878063 chr19:49878063 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1733 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1733 DeepMRMD:1;iRNA_m5C:1 1734 chr19 48259803 48259803 1 + C T UCEC 48259803 + 48259783 48259823 41 AGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAGCTTC AGCCCGAGGGCAACATCCTTTGAGACCGGTTCAAGAGCTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259803 chr19:48259803 stopgain 0.513 0 21 hm5C_associated_SNPs_1734 0 0 1 0 2 unknown 1 0 1 1 hm5C_site_1734 DeepMRMD:1;iRNA_m5C:1 1735 chr14 65007630 65007630 1 + C T UCEC 65007630 + 65007610 65007650 41 ACCTATTCGTGCGTCGGGGTCTTCCAACATGGCAAGGTGGA ACCTATTCGTGCGTCGGGGTTTTCCAACATGGCAAGGTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65007630 chr14:65007630 synonymous SNV . 0 21 hm5C_associated_SNPs_1735 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1735 DeepMRMD:1;iRNA_m5C:1 1736 chr6 111288931 111288931 1 + C A UCEC 111288931 + 111288911 111288951 41 AAATAGAAGATTCTGGTCCTCTTATTGATATACCTTCTGAG AAATAGAAGATTCTGGTCCTATTATTGATATACCTTCTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF3C6 ENSG00000155115 CDS Human protein_coding chr6:111288931 chr6:111288931 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_1736 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1736 DeepMRMD:1;iRNA_m5C:1 1737 chr7 130021483 130021483 1 + C T UCEC 130021483 + 130021463 130021503 41 CTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGC CTCCCCAGCTGGACTTCTGGTGGGGGCCTGCCCACCCTGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021483 chr7:130021483 nonsynonymous SNV 0.896 3 21 hm5C_associated_SNPs_1737 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1737 DeepMRMD:1;iRNA_m5C:1 1738 chr20 2635125 2635125 1 + C A UCEC 2635125 + 2635105 2635145 41 CGTCCAAAAAGAAGAAAGTACTCTTGGGAGTTGGGGATCCC CGTCCAAAAAGAAGAAAGTAATCTTGGGAGTTGGGGATCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635125 chr20:2635125 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1738 0 0 1 1 2 Cytosol 1 0 1 1 hm5C_site_1738 DeepMRMD:1;iRNA_m5C:1 1739 chr12 95897859 95897859 1 + C T UCEC 95897859 + 95897839 95897879 41 AGTGTGCTGGAATTGATGTTCGTCTGTGTGATGTTGGTGAG AGTGTGCTGGAATTGATGTTTGTCTGTGTGATGTTGGTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95897859 chr12:95897859 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_1739 0 0 1 2 1 Ribosome 1 0 1 1 hm5C_site_1739 DeepMRMD:1;iRNA_m5C:1 1740 chr19 39870630 39870630 1 + C T UCEC 39870630 + 39870610 39870650 41 TCACGGAGACGCAGAAGAAACGGCTGCTATCCTGGAAACAG TCACGGAGACGCAGAAGAAATGGCTGCTATCCTGGAAACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39870630 chr19:39870630 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1740 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1740 DeepMRMD:1;iRNA_m5C:1 1741 chr10 43289408 43289408 1 + C T UCEC 43289408 + 43289388 43289428 41 CGCTGTTTTCTGATTCCAAGCCACTTGGGTCAGAGGATATA CGCTGTTTTCTGATTCCAAGTCACTTGGGTCAGAGGATATA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43289408 chr10:43289408 nonsynonymous SNV 0.529 1 21 hm5C_associated_SNPs_1741 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_1741 DeepMRMD:1;iRNA_m5C:1 1742 chrX 69370124 69370124 1 + C T UCEC 69370124 + 69370104 69370144 41 GTGACTGGTATGAGCAACATCGGAAATATGGAGCATTACCG GTGACTGGTATGAGCAACATTGGAAATATGGAGCATTACCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69370124 chrX:69370124 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_1742 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1742 DeepMRMD:1;iRNA_m5C:1 1743 chr12 21207493 21207493 1 + C T UCEC 21207493 + 21207473 21207513 41 GCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT GCTTGTACAAGGAAATCTTATGTTTATTTTGTAATTCAAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207493 chr12:21207493 synonymous SNV . 0 21 hm5C_associated_SNPs_1743 0 0 0 0 1 nucleus 1 0 1 1 hm5C_site_1743 DeepMRMD:1;iRNA_m5C:1 1744 chr1 249212364 249212364 1 + C A UCEC 249212364 + 249212344 249212384 41 GCCTGTGTGTATCTGGAGAGCAATGCTGACACAACATCTCA GCCTGTGTGTATCTGGAGAGAAATGCTGACACAACATCTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212364 chr1:249212364 nonsynonymous SNV 0.802 0 21 hm5C_associated_SNPs_1744 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1744 DeepMRMD:1;iRNA_m5C:1 1745 chr17 77755539 77755539 1 + C T UCEC 77755539 + 77755519 77755559 41 CCGGAAGAGAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGC CCGGAAGAGAGGCAAGAGGCTGAGAGGCCGGCCAAGGAAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755539 chr17:77755539 nonsynonymous SNV 0.852 4 21 hm5C_associated_SNPs_1745 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1745 DeepMRMD:1;iRNA_m5C:1 1746 chr11 25004826 25004826 1 + C T UCEC 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCCAGATGCAGTGGCCAAAAGCAAGGTACCTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004826 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_1746 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1746 DeepMRMD:1;iRNA_m5C:1 1747 chr5 72185767 72185767 1 + C T UCEC 72185767 + 72185747 72185787 41 CATTAGCAGATTCAGTAGGACATCATTTAAACAAACCAGTA CATTAGCAGATTCAGTAGGATATCATTTAAACAAACCAGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185767 chr5:72185767 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1747 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1747 DeepMRMD:1;iRNA_m5C:1 1748 chr3 141006161 141006161 1 + C T UCEC 141006161 + 141006141 141006181 41 CTATCATCTCTCTAGGAAACCGTATCACCCAAAACTGGAAG CTATCATCTCTCTAGGAAACTGTATCACCCAAAACTGGAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:141006161 chr3:141006161 nonsynonymous SNV 0.928 3 21 hm5C_associated_SNPs_1748 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_1748 DeepMRMD:1;iRNA_m5C:1 1749 chr16 57486774 57486774 1 + C T UCEC 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCACTGCATCCTGACGGCAGCCCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486774 nonsynonymous SNV 0.989 4 21 hm5C_associated_SNPs_1749 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1749 DeepMRMD:1;iRNA_m5C:1 1750 chr14 39650825 39650825 1 + C T UCEC 39650825 + 39650805 39650845 41 GTAGAAGTCGGAGTAGGGGCCGGGGACATAATAGAGATAGA GTAGAAGTCGGAGTAGGGGCTGGGGACATAATAGAGATAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39650825 chr14:39650825 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1750 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1750 DeepMRMD:1;iRNA_m5C:1 1751 chr7 65706154 65706154 1 + C T UCEC 65706154 + 65706134 65706174 41 AACTTGTCTTACATCCTGAACGGTGGATGAGAACACTCTTA AACTTGTCTTACATCCTGAATGGTGGATGAGAACACTCTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65706154 chr7:65706154 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1751 0 0 0 0 0 nucleoplasm 1 0 1 1 hm5C_site_1751 DeepMRMD:1;iRNA_m5C:1 1752 chr19 5908886 5908886 1 + C T UCEC 5908886 + 5908866 5908906 41 ACCTCAGAAGCCACTGTCCACAGCCTGCAGGCCACCGTGCA ACCTCAGAAGCCACTGTCCATAGCCTGCAGGCCACCGTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VMAC ENSG00000187650 CDS Human protein_coding chr19:5908886 chr19:5908886 synonymous SNV . 0 21 hm5C_associated_SNPs_1752 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1752 DeepMRMD:1;iRNA_m5C:1 1753 chr7 30640781 30640781 1 + C T UCEC 30640781 + 30640761 30640801 41 GAGGAACAGATCCTGGAGATCGATTGCACCATGCTCACCCC GAGGAACAGATCCTGGAGATTGATTGCACCATGCTCACCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GARS ENSG00000106105 CDS Human protein_coding chr7:30640781 chr7:30640781 synonymous SNV . 0 21 hm5C_associated_SNPs_1753 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1753 DeepMRMD:1;iRNA_m5C:1 1754 chr17 65735673 65735673 1 + C T UCEC 65735673 + 65735653 65735693 41 TTCCTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT TTCCTGTACCTGAAGTGTAGTGAAAATGCTACTATGACTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735673 chr17:65735673 synonymous SNV . 0 21 hm5C_associated_SNPs_1754 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1754 DeepMRMD:1;iRNA_m5C:1 1755 chr2 203157511 203157511 1 + C T UCEC 203157511 + 203157491 203157531 41 TTATACTAGGTGATTGAAATCTCTGAATATCGAACCCAGCT TTATACTAGGTGATTGAAATTTCTGAATATCGAACCCAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOP58 ENSG00000055044 CDS Human protein_coding chr2:203157511 chr2:203157511 synonymous SNV . 0 21 hm5C_associated_SNPs_1755 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1755 DeepMRMD:1;iRNA_m5C:1 1756 chr22 23438366 23438366 1 + C T UCEC 23438366 + 23438346 23438386 41 ACTACCTGAACGACCTGGAGCGCATCGCCGCAGCTGACTAT ACTACCTGAACGACCTGGAGTGCATCGCCGCAGCTGACTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438366 chr22:23438366 nonsynonymous SNV 0.988 1 21 hm5C_associated_SNPs_1756 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1756 DeepMRMD:1;iRNA_m5C:1 1757 chr16 2087970 2087970 1 + C A UCEC 2087970 + 2087950 2087990 41 TGGAACAGGAAGCGTGAAATCTTCAGCAACTTCTGAGCCCC TGGAACAGGAAGCGTGAAATATTCAGCAACTTCTGAGCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2087970 chr16:2087970 synonymous SNV . 0 21 hm5C_associated_SNPs_1757 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1757 DeepMRMD:1;iRNA_m5C:1 1758 chr19 45803093 45803093 1 + C T UCEC 45803093 + 45803073 45803113 41 GCAGACGAACCTGAGAGAATCGGGGGACCTGAGGTCACAAG GCAGACGAACCTGAGAGAATTGGGGGACCTGAGGTCACAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45803093 chr19:45803093 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1758 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1758 DeepMRMD:1;iRNA_m5C:1 1759 chr12 100732687 100732687 1 + C A UCEC 100732687 + 100732667 100732707 41 ATATGTCTGCCCTTAATAATCTCTTTGGCCCTCAGAAACCC ATATGTCTGCCCTTAATAATATCTTTGGCCCTCAGAAACCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732687 chr12:100732687 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1759 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_1759 DeepMRMD:1;iRNA_m5C:1 1760 chr5 9548965 9548965 1 + C A UCEC 9548965 + 9548945 9548985 41 CTTGGTGAAAATGATGAATTCTGGGGCGCTGATTCATGTGA CTTGGTGAAAATGATGAATTATGGGGCGCTGATTCATGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000239112 ncRNA_exonic Human snoRNA chr5:9548965 chr5:9548965 . . 0 21 hm5C_associated_SNPs_1760 0 0 0 0 0 unknown 1 0 1 1 hm5C_site_1760 DeepMRMD:1;iRNA_m5C:1 1761 chr9 131455929 131455929 1 + C T UCEC 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGACGAAATGTTCGAGTCAAACGCAGAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455929 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1761 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1761 DeepMRMD:1;iRNA_m5C:1 1762 chrX 53112254 53112254 1 + C T UCEC 53112254 + 53112234 53112274 41 GCAGCAGGAGGCGGCGGCGGCGGCGGAGGAGGAAGCAGAGG GCAGCAGGAGGCGGCGGCGGTGGCGGAGGAGGAAGCAGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53112254 chrX:53112254 nonsynonymous SNV 0.519 4 21 hm5C_associated_SNPs_1762 0 0 0 0 0 chromatin 1 0 1 1 hm5C_site_1762 DeepMRMD:1;iRNA_m5C:1 1763 chr15 63111780 63111780 1 + C T UCEC 63111780 + 63111760 63111800 41 TTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCA TTCTCCAAGCGAGTCGCCGGTGCTGTGACAGAGCTCATCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63111780 chr15:63111780 synonymous SNV . 0 21 hm5C_associated_SNPs_1763 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_1763 DeepMRMD:1;iRNA_m5C:1 1764 chr16 83251057 83251057 1 + C A UCEC 83251057 + 83251037 83251077 41 AATGAGAACACAGGGAGCGTCTCCGTGACACGGACCTTGGA AATGAGAACACAGGGAGCGTATCCGTGACACGGACCTTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:83251057 chr16:83251057 synonymous SNV . 0 21 hm5C_associated_SNPs_1764 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1764 DeepMRMD:1;iRNA_m5C:1 1765 chr7 131128390 131128390 1 + C T UCEC 131128390 + 131128370 131128410 41 GTCAAACCTGGAAACTTCTTCGAGAGGACTCCTGTAATGCT GTCAAACCTGGAAACTTCTTTGAGAGGACTCCTGTAATGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MKLN1 ENSG00000128585 CDS Human protein_coding chr7:131128390 chr7:131128390 stopgain 1.000 1 21 hm5C_associated_SNPs_1765 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1765 DeepMRMD:1;iRNA_m5C:1 1766 chr19 13010519 13010519 1 + C T UCEC 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCGTTTAGATGTGTTCCTTAAAAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010519 stopgain . 0 21 hm5C_associated_SNPs_1766 0 0 1 1 1 Ribosome 1 0 1 1 hm5C_site_1766 DeepMRMD:1;iRNA_m5C:1 1767 chr2 169622178 169622178 1 + C A UCEC 169622178 + 169622158 169622198 41 GGTGGGTTTTTAACCTACTGCTATTGCTAGTACAAGGGTTG GGTGGGTTTTTAACCTACTGATATTGCTAGTACAAGGGTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169622178 chr2:169622178 nonsynonymous SNV 0.677 5 21 hm5C_associated_SNPs_1767 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1767 DeepMRMD:1;iRNA_m5C:1 1768 chr12 49666983 49666983 1 + C T UCEC 49666983 + 49666963 49667003 41 GTTGGAGCAGATAGTGCTGACGGAGAGGATGAGGGTGAAGA GTTGGAGCAGATAGTGCTGATGGAGAGGATGAGGGTGAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TUBA1C ENSG00000167553 CDS Human protein_coding chr12:49666983 chr12:49666983 synonymous SNV . 0 21 hm5C_associated_SNPs_1768 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1768 DeepMRMD:1;iRNA_m5C:1 1769 chr6 26204977 26204977 1 + C T UCEC 26204977 + 26204957 26204997 41 GGCATTACCAAGCCTGCCATCCGGCGCCTTGCTCGTCGCGG GGCATTACCAAGCCTGCCATTCGGCGCCTTGCTCGTCGCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIST1H4E ENSG00000198518 CDS Human other chr6:26204977 chr6:26204977 synonymous SNV . 0 21 hm5C_associated_SNPs_1769 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1769 DeepMRMD:1;iRNA_m5C:1 1770 chr10 17271866 17271866 1 + C T UCEC 17271866 + 17271846 17271886 41 GCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCGG GCAAGTCGCGCCTGGGGGACTTCTACGAGGAGGAGATGCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271866 chr10:17271866 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1770 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1770 DeepMRMD:1;iRNA_m5C:1 1771 chr16 14041557 14041557 1 + C T UCEC 14041557 + 14041537 14041577 41 TTCCATCTCTGATCCATCGTCGGGGCATTGACATTGAACCC TTCCATCTCTGATCCATCGTTGGGGCATTGACATTGAACCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14041557 chr16:14041557 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1771 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1771 DeepMRMD:1;iRNA_m5C:1 1772 chr5 131973793 131973793 1 + C T UCEC 131973793 + 131973773 131973813 41 ATATTGAATACATAGAAATACGGTCTGATGCCGATGAAAAT ATATTGAATACATAGAAATATGGTCTGATGCCGATGAAAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131973793 chr5:131973793 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_1772 1 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1772 DeepMRMD:1;iRNA_m5C:1 Hereditary cancer-predisposing syndrome Hereditary cancer-predisposing syndrome 1773 chr17 57733217 57733217 1 + C T UCEC 57733217 + 57733197 57733237 41 TTGATTTTCTTTCTGTAGATCAGTGAAAAGCATGATGTGGT TTGATTTTCTTTCTGTAGATTAGTGAAAAGCATGATGTGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57733217 chr17:57733217 synonymous SNV . 0 21 hm5C_associated_SNPs_1773 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1773 DeepMRMD:1;iRNA_m5C:1 1774 chr7 142459721 142459721 1 + C T UCEC 142459721 + 142459701 142459741 41 ATCATCCGCCACCCCCAATACGACAGGAAGACTCTGAACAA ATCATCCGCCACCCCCAATATGACAGGAAGACTCTGAACAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459721 chr7:142459721 synonymous SNV . 0 21 hm5C_associated_SNPs_1774 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1774 DeepMRMD:1;iRNA_m5C:1 1775 chr20 9376240 9376240 1 + C T UCEC 9376240 + 9376220 9376260 41 CCAGCAAACATCTTAGAGGACGATAATGAAGAGGAGATCGA CCAGCAAACATCTTAGAGGATGATAATGAAGAGGAGATCGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9376240 chr20:9376240 synonymous SNV . 0 21 hm5C_associated_SNPs_1775 1 0 0 0 2 nucleolus 1 0 1 1 hm5C_site_1775 DeepMRMD:1;iRNA_m5C:1 Auriculocondylar syndrome Auriculocondylar syndrome 1776 chr11 129996710 129996710 1 + C T UCEC 129996710 + 129996690 129996730 41 CAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAA CAGCTGGAGATTCGGCACCGTAACCGAATGGACAGGGTAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:129996710 chr11:129996710 synonymous SNV . 0 21 hm5C_associated_SNPs_1776 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1776 DeepMRMD:1;iRNA_m5C:1 1777 chr6 43189429 43189429 1 + C A UCEC 43189429 + 43189409 43189449 41 AGCTTCCTCCATAGCATGACCTGTGCCAAATGTAACCATGG AGCTTCCTCCATAGCATGACATGTGCCAAATGTAACCATGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43189429 chr6:43189429 synonymous SNV . 0 21 hm5C_associated_SNPs_1777 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1777 DeepMRMD:1;iRNA_m5C:1 1778 chrX 135593877 135593877 1 + C T UCEC 135593877 + 135593857 135593897 41 AGATGAAAAGGGGCTTGAAGCTGCTGATAAAAAGGCGGAAG AGATGAAAAGGGGCTTGAAGTTGCTGATAAAAAGGCGGAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593877 chrX:135593877 nonsynonymous SNV 0.276 1 21 hm5C_associated_SNPs_1778 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1778 DeepMRMD:1;iRNA_m5C:1 1779 chr2 233681725 233681725 1 + C T UCEC 233681725 + 233681705 233681745 41 AAAGGCGAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGTA AAAGGCGAGAGGAAGAAGAATTTGCCCGAAGGAAACAGGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681725 chr2:233681725 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_1779 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1779 DeepMRMD:1;iRNA_m5C:1 1780 chr7 142458446 142458446 1 + C A UCEC 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGATACAACTGTGAGGAGAATTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458446 synonymous SNV . 0 21 hm5C_associated_SNPs_1780 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1780 DeepMRMD:1;iRNA_m5C:1 1781 chr19 19655244 19655244 1 + C T UCEC 19655244 + 19655224 19655264 41 GACCTGCGCTTCGTGGACAGCGACGGCGAGCTGGCTCCACT GACCTGCGCTTCGTGGACAGTGACGGCGAGCTGGCTCCACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19655244 chr19:19655244 synonymous SNV . 0 21 hm5C_associated_SNPs_1781 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1781 DeepMRMD:1;iRNA_m5C:1 1782 chr6 34823411 34823411 1 + C T UCEC 34823411 + 34823391 34823431 41 TAGGTGTCTCTGCCAACAGACTCATGGGTGGTGCCATGCAG TAGGTGTCTCTGCCAACAGATTCATGGGTGGTGCCATGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34823411 chr6:34823411 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1782 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1782 DeepMRMD:1;iRNA_m5C:1 1783 chr19 18254659 18254659 1 + C T UCEC 18254659 + 18254639 18254679 41 CAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC CAGCCCATCTCTCCTGAATATCATCAGCCTGGACACAATGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18254659 chr19:18254659 nonsynonymous SNV 0.034 0 21 hm5C_associated_SNPs_1783 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1783 DeepMRMD:1;iRNA_m5C:1 1784 chrX 153696537 153696537 1 + C T UCEC 153696537 + 153696517 153696557 41 CGCGTGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA CGCGTGCTCTTCCCGGGCATTGAGGCCCACCCGGTGCTCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696537 chrX:153696537 synonymous SNV . 0 21 hm5C_associated_SNPs_1784 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1784 DeepMRMD:1;iRNA_m5C:1 1785 chr1 200818115 200818115 1 + C T UCEC 200818115 + 200818095 200818135 41 AAACAGGGCTTCCACAGGGACGGGACACTACCCAGCTGTTG AAACAGGGCTTCCACAGGGATGGGACACTACCCAGCTGTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200818115 chr1:200818115 nonsynonymous SNV 0.931 3 21 hm5C_associated_SNPs_1785 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_1785 DeepMRMD:1;iRNA_m5C:1 1786 chr9 136224615 136224615 1 + C T UCEC 136224615 + 136224595 136224635 41 TGTTCTGCAAACTCACCCTGCGGCACATCAACAAGTGCCCA TGTTCTGCAAACTCACCCTGTGGCACATCAACAAGTGCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control SURF2 ENSG00000148291 CDS Human protein_coding chr9:136224615 chr9:136224615 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1786 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1786 DeepMRMD:1;iRNA_m5C:1 1787 chrX 16753431 16753431 1 + C T UCEC 16753431 + 16753411 16753451 41 AGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAG AGCACAAACAATAAAGAAATTCGTAGAAGAAGGAAAAATAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16753431 chrX:16753431 nonsynonymous SNV 0.868 3 21 hm5C_associated_SNPs_1787 0 0 1 0 3 Ribosome 1 0 1 1 hm5C_site_1787 DeepMRMD:1;iRNA_m5C:1 1788 chr1 214503545 214503545 1 + C T UCEC 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTCCTGTACCCAATGGAAGATAGAAATGACCGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503545 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1788 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1788 DeepMRMD:1;iRNA_m5C:1 1789 chr3 58109014 58109014 1 + C A UCEC 58109014 + 58108994 58109034 41 CCCACAAAACCCGGGGAGTACTTCGTCAACATCCTCTTTGA CCCACAAAACCCGGGGAGTAATTCGTCAACATCCTCTTTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58109014 chr3:58109014 stopgain 0.932 1 21 hm5C_associated_SNPs_1789 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1789 DeepMRMD:1;iRNA_m5C:1 1790 chr12 112227678 112227678 1 + C T UCEC 112227678 + 112227658 112227698 41 GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACAC GGGAAAACCATCCCCATTGATGGAGACTTCTTCAGCTACAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112227678 chr12:112227678 synonymous SNV . 0 21 hm5C_associated_SNPs_1790 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1790 DeepMRMD:1;iRNA_m5C:1 1791 chr8 21859735 21859735 1 + C T UCEC 21859735 + 21859715 21859755 41 ACACCCCTGAACCAGGAGAGCGACCGCTTTCTGCACATCAT ACACCCCTGAACCAGGAGAGTGACCGCTTTCTGCACATCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859735 chr8:21859735 synonymous SNV . 0 21 hm5C_associated_SNPs_1791 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1791 DeepMRMD:1;iRNA_m5C:1 1792 chr3 160122141 160122141 1 + C T UCEC 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGATTATGAAGTCATTCTTAACAGTAATTTCTATGTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122141 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1792 0 0 1 3 1 Nucleus 1 0 1 1 hm5C_site_1792 DeepMRMD:1;iRNA_m5C:1 1793 chr10 101715533 101715533 1 + G A UCEC 101715533 - 101715513 101715553 41 GAGAAGAGCTTGGCAGGGCCCGGCACAGAGCCAGATAAAAT GAGAAGAGCTTGGCAGGGCCTGGCACAGAGCCAGATAAAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNMBP ENSG00000107554 CDS Human protein_coding chr10:101715533 chr10:101715533 synonymous SNV . 0 21 hm5C_associated_SNPs_1793 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_1793 DeepMRMD:1;iRNA_m5C:1 1794 chr3 48506023 48506023 1 + C A UCEC 48506023 + 48506003 48506043 41 TTGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAAC TTGGTGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506023 chr3:48506023 nonsynonymous SNV 0.133 0 21 hm5C_associated_SNPs_1794 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1794 DeepMRMD:1;iRNA_m5C:1 1795 chrX 47092421 47092421 1 + C T UCEC 47092421 + 47092401 47092441 41 ATCTCGCACAGCTGCGTTGGCTGTAGAAGAGAACGGACGGC ATCTCGCACAGCTGCGTTGGTTGTAGAAGAGAACGGACGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47092421 chrX:47092421 synonymous SNV . 0 21 hm5C_associated_SNPs_1795 0 0 1 0 0 cytosol 1 0 1 1 hm5C_site_1795 DeepMRMD:1;iRNA_m5C:1 1796 chr12 53647877 53647877 1 + C T UCEC 53647877 + 53647857 53647897 41 CTGCTGTCATGGTGATGGCTCTGCTGGCAGTGGTGGGACTC CTGCTGTCATGGTGATGGCTTTGCTGGCAGTGGTGGGACTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFSD5 ENSG00000182544 CDS Human protein_coding chr12:53647877 chr12:53647877 synonymous SNV . 0 21 hm5C_associated_SNPs_1796 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1796 DeepMRMD:1;iRNA_m5C:1 1797 chr12 53515180 53515180 1 + C T UCEC 53515180 + 53515160 53515200 41 GCTACGTGTATCAGGATGGGCTGCGGGTATGGGCCCTGCAG GCTACGTGTATCAGGATGGGTTGCGGGTATGGGCCCTGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53515180 chr12:53515180 synonymous SNV . 0 21 hm5C_associated_SNPs_1797 0 0 1 0 2 cytosol 1 0 1 1 hm5C_site_1797 DeepMRMD:1;iRNA_m5C:1 1798 chr7 150765105 150765105 1 + C T UCEC 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACGTGGCCTCCCTCTCCTTCTGCAGTCTCCTGGAGCTCCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765105 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1798 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1798 DeepMRMD:1;iRNA_m5C:1 1799 chr11 63997328 63997328 1 + C T UCEC 63997328 + 63997308 63997348 41 TTGTCTCCCCACAGAACGTGCAGAGATTGCTCGAGACGGAG TTGTCTCCCCACAGAACGTGTAGAGATTGCTCGAGACGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997328 chr11:63997328 stopgain 0.009 0 21 hm5C_associated_SNPs_1799 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_1799 DeepMRMD:1;iRNA_m5C:1 1800 chr3 49742520 49742520 1 + C T UCEC 49742520 + 49742500 49742540 41 CAACCGCTTCCTCAGCACAGCGGCTGTGAGCCTCATGACCC CAACCGCTTCCTCAGCACAGTGGCTGTGAGCCTCATGACCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742520 chr3:49742520 nonsynonymous SNV 0.789 4 21 hm5C_associated_SNPs_1800 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1800 DeepMRMD:1;iRNA_m5C:1 1801 chr16 67671681 67671681 1 + C T UCEC 67671681 + 67671661 67671701 41 AGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGAGG AGAGCCAGATGCTGAGCCCGTAGAGGGAGAGGAAGAGGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671681 chr16:67671681 nonsynonymous SNV 0.099 0 21 hm5C_associated_SNPs_1801 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1801 DeepMRMD:1;iRNA_m5C:1 1802 chrX 69353952 69353952 1 + C T UCEC 69353952 + 69353932 69353972 41 CTTGGACCTCCTTGAGAAGGCTGCCGAAATGTTATCGCAGC CTTGGACCTCCTTGAGAAGGTTGCCGAAATGTTATCGCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69353952 chrX:69353952 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_1802 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1802 DeepMRMD:1;iRNA_m5C:1 1803 chr11 74329739 74329739 1 + C T UCEC 74329739 + 74329719 74329759 41 ATGGCCCACCTGCATCCAAGCAGGTTTCCCAGCAGCCCAAA ATGGCCCACCTGCATCCAAGTAGGTTTCCCAGCAGCCCAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329739 chr11:74329739 stopgain 0.971 0 21 hm5C_associated_SNPs_1803 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1803 DeepMRMD:1;iRNA_m5C:1 1804 chr7 142460370 142460370 1 + C T UCEC 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATTACCAGTAACATGTTCTGTGTGGGCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460370 synonymous SNV . 0 21 hm5C_associated_SNPs_1804 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1804 DeepMRMD:1;iRNA_m5C:1 1805 chr19 11145704 11145704 1 + C T UCEC 11145704 + 11145684 11145724 41 AGGACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG AGGACGACGCGGAGGTGGAGTGGCTGACCTGTGAGGAGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145704 chr19:11145704 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1805 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1805 DeepMRMD:1;iRNA_m5C:1 1806 chrX 41000586 41000586 1 + C T UCEC 41000586 + 41000566 41000606 41 TCAATGGAAAGATGAATGCACTGAATGAAGTTAATAAGGTG TCAATGGAAAGATGAATGCATTGAATGAAGTTAATAAGGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41000586 chrX:41000586 synonymous SNV . 0 21 hm5C_associated_SNPs_1806 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1806 DeepMRMD:1;iRNA_m5C:1 1807 chr10 94109496 94109496 1 + C T UCEC 94109496 + 94109476 94109516 41 CAGATCATGTCTCTGCTACTCGAATCTTGTGTGGAGCCCTT CAGATCATGTCTCTGCTACTTGAATCTTGTGTGGAGCCCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH5 ENSG00000198060 CDS Human protein_coding chr10:94109496 chr10:94109496 stopgain 0.997 1 21 hm5C_associated_SNPs_1807 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1807 DeepMRMD:1;iRNA_m5C:1 1808 chr19 58198728 58198728 1 + C A UCEC 58198728 + 58198708 58198748 41 AGTTCACACTGGAGAAAGGCCTTATGAATGTGGCGAGTGCG AGTTCACACTGGAGAAAGGCATTATGAATGTGGCGAGTGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF551 ENSG00000204519 CDS Human protein_coding chr19:58198728 chr19:58198728 nonsynonymous SNV 0.010 1 21 hm5C_associated_SNPs_1808 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1808 DeepMRMD:1;iRNA_m5C:1 1809 chr1 231386713 231386713 1 + C T UCEC 231386713 + 231386693 231386733 41 TGCCTTATCCACAGAAGGAGCTCAAAAAGTGGGATGAGTTT TGCCTTATCCACAGAAGGAGTTCAAAAAGTGGGATGAGTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231386713 chr1:231386713 nonsynonymous SNV 0.977 0 21 hm5C_associated_SNPs_1809 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1809 DeepMRMD:1;iRNA_m5C:1 1810 chr1 147091688 147091688 1 + C T UCEC 147091688 + 147091668 147091708 41 AAACTCTGAAATGGAAGGGCCGAATGTCCCCAACCCTGCAT AAACTCTGAAATGGAAGGGCTGAATGTCCCCAACCCTGCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCL9 ENSG00000116128 CDS Human protein_coding chr1:147091688 chr1:147091688 nonsynonymous SNV 0.775 2 21 hm5C_associated_SNPs_1810 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_1810 DeepMRMD:1;iRNA_m5C:1 1811 chr7 44806140 44806140 1 + C T UCEC 44806140 + 44806120 44806160 41 CAAACCCTCCCCCAGCGTCCCGGCAGTCCTTGGGCCAAGCG CAAACCCTCCCCCAGCGTCCTGGCAGTCCTTGGGCCAAGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806140 chr7:44806140 nonsynonymous SNV 0.990 4 21 hm5C_associated_SNPs_1811 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1811 DeepMRMD:1;iRNA_m5C:1 1812 chr11 66278678 66278678 1 + C A UCEC 66278678 + 66278658 66278698 41 GGCCCTTTTGTTTTCCAGCGCTGGCAGATTTACATGGGGAT GGCCCTTTTGTTTTCCAGCGATGGCAGATTTACATGGGGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66278678 chr11:66278678 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_1812 0 0 1 0 2 membrane 1 0 1 1 hm5C_site_1812 DeepMRMD:1;iRNA_m5C:1 1813 chr14 60591543 60591543 1 + C T UCEC 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTCTATTAGGATACCCTGTTGTTGACAAAGGAAAACAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591543 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_1813 0 0 1 3 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1813 DeepMRMD:1;iRNA_m5C:1 1814 chr1 151551199 151551199 1 + C T UCEC 151551199 + 151551179 151551219 41 TCTGGTCTTTATCCCCAGGGCTGCTACCCTGGAAAAGGAAG TCTGGTCTTTATCCCCAGGGTTGCTACCCTGGAAAAGGAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151551199 chr1:151551199 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_1814 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_1814 DeepMRMD:1;iRNA_m5C:1 1815 chr17 7479907 7479907 1 + C T UCEC 7479907 + 7479887 7479927 41 TGTCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT TGTCACGCCTGTATCGGGGGTACCAACGTGCGTGCTGAGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479907 chr17:7479907 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_1815 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1815 DeepMRMD:1;iRNA_m5C:1 1816 chr7 151818003 151818003 1 + C T UCEC 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCGCTCATCAGACCCGCCATGGCTCATGAAATGCCACGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151818003 nonsynonymous SNV 0.980 3 21 hm5C_associated_SNPs_1816 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1816 DeepMRMD:1;iRNA_m5C:1 1817 chr12 53664581 53664581 1 + C T UCEC 53664581 + 53664561 53664601 41 ACGGACCACATGGGGATGACCGGTTAGTGCCCTGGGTCCCA ACGGACCACATGGGGATGACTGGTTAGTGCCCTGGGTCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53664581 chr12:53664581 synonymous SNV . 0 21 hm5C_associated_SNPs_1817 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1817 DeepMRMD:1;iRNA_m5C:1 1818 chr13 103298646 103298646 1 + C T UCEC 103298646 + 103298626 103298666 41 GTAGTTTCCTCATTACAGCCCAGTGAGTGCAAAAACAAAAC GTAGTTTCCTCATTACAGCCTAGTGAGTGCAAAAACAAAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103298646 chr13:103298646 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_1818 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1818 DeepMRMD:1;iRNA_m5C:1 1819 chr9 37424938 37424938 1 + C T UCEC 37424938 + 37424918 37424958 41 GGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGAT GGCCTGCTCTGCCTCCTCTCTGACCACGTGGACAAGAGGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424938 chr9:37424938 synonymous SNV . 0 21 hm5C_associated_SNPs_1819 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1819 DeepMRMD:1;iRNA_m5C:1 1820 chr16 30779624 30779624 1 + C A UCEC 30779624 + 30779604 30779644 41 AAGAAGGAGGAGCTGGTCCCCTCTGAAGAGGACTTCCAGGG AAGAAGGAGGAGCTGGTCCCATCTGAAGAGGACTTCCAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30779624 chr16:30779624 synonymous SNV . 0 21 hm5C_associated_SNPs_1820 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1820 DeepMRMD:1;iRNA_m5C:1 1821 chr11 65273147 65273147 1 + C A UCEC 65273147 + 65273127 65273167 41 TTTCAAGGTAACGATGGTGTCGAGGTCTTTGGTGGGTTGAA TTTCAAGGTAACGATGGTGTAGAGGTCTTTGGTGGGTTGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273147 chr11:65273147 . . 0 21 hm5C_associated_SNPs_1821 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_1821 DeepMRMD:1;iRNA_m5C:1 1822 chr16 717579 717579 1 + C G UCEC 717579 + 717559 717599 41 GATCCTTGTGTGGGAGGTCCCCGGCCTCTGAGATGCAGCAG GATCCTTGTGTGGGAGGTCCGCGGCCTCTGAGATGCAGCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:717579 chr16:717579 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_1822 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1822 DeepMRMD:1;iRNA_m5C:1 1823 chr11 67052434 67052434 1 + C T UCEC 67052434 + 67052414 67052454 41 TCCCCAACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCG TCCCCAACCGCCTCGAGTGGTGGGGCGAGGGCGAGGCCCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052434 chr11:67052434 nonsynonymous SNV 0.983 3 21 hm5C_associated_SNPs_1823 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1823 DeepMRMD:1;iRNA_m5C:1 1824 chr12 19427793 19427793 1 + C T UCEC 19427793 + 19427773 19427813 41 CAGATCTTAGAGGTGGAAATCGCCCCAATACAGGGCCCTTA CAGATCTTAGAGGTGGAAATTGCCCCAATACAGGGCCCTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHA5 ENSG00000052126 CDS Human protein_coding chr12:19427793 chr12:19427793 nonsynonymous SNV 0.883 1 21 hm5C_associated_SNPs_1824 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1824 DeepMRMD:1;iRNA_m5C:1 1825 chr1 249212016 249212016 1 + C T UCEC 249212016 + 249211996 249212036 41 AGTGAGGAGATCATCGTGTGCCGCTGGCACGATAGCAGCGT AGTGAGGAGATCATCGTGTGTCGCTGGCACGATAGCAGCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212016 chr1:249212016 synonymous SNV . 0 21 hm5C_associated_SNPs_1825 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1825 DeepMRMD:1;iRNA_m5C:1 1826 chr15 36989526 36989526 1 + C T UCEC 36989526 + 36989506 36989546 41 TTAACTGAAACTTCCCAGTGCCATTGGTCATGAGCATGAGG TTAACTGAAACTTCCCAGTGTCATTGGTCATGAGCATGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989526 chr15:36989526 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1826 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1826 DeepMRMD:1;iRNA_m5C:1 1827 chr1 145325991 145325991 1 + C T UCEC 145325991 + 145325971 145326011 41 GATGAGAAAGGGCCTGAAGTCTTGCAAGACTCACTGGATAG GATGAGAAAGGGCCTGAAGTTTTGCAAGACTCACTGGATAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NBPF10 ENSG00000163386 CDS Human other chr1:145325991 chr1:145325991 synonymous SNV . 0 21 hm5C_associated_SNPs_1827 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_1827 DeepMRMD:1;iRNA_m5C:1 1828 chr14 103931971 103931971 1 + C T UCEC 103931971 + 103931951 103931991 41 AGCAATGAATTTACTGTTGGCGGTAAACTCGACACGTTTTG AGCAATGAATTTACTGTTGGTGGTAAACTCGACACGTTTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK3 ENSG00000075413 CDS Human protein_coding chr14:103931971 chr14:103931971 synonymous SNV . 0 21 hm5C_associated_SNPs_1828 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1828 DeepMRMD:1;iRNA_m5C:1 1829 chr14 21553984 21553984 1 + C A UCEC 21553984 + 21553964 21554004 41 CAAACTCAAGTGGACAAGTTCTATTGCCCAGCTGCTGTGGA CAAACTCAAGTGGACAAGTTATATTGCCCAGCTGCTGTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21553984 chr14:21553984 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_1829 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1829 DeepMRMD:1;iRNA_m5C:1 1830 chr11 9530377 9530377 1 + C A UCEC 9530377 + 9530357 9530397 41 GAGGAGGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTGA GAGGAGGAGCAGGAAGCCTTATTTGAGCCGCCCCCAGGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9530377 chr11:9530377 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1830 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1830 DeepMRMD:1;iRNA_m5C:1 1831 chr1 120286596 120286596 1 + C T UCEC 120286596 + 120286576 120286616 41 CTGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGG CTGGCACGTCATGGGCATCTTCTCCTTGCTGCCCAGCCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286596 chr1:120286596 nonsynonymous SNV 0.992 5 21 hm5C_associated_SNPs_1831 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1831 DeepMRMD:1;iRNA_m5C:1 1832 chr17 64785043 64785043 1 + C T UCEC 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCCGGAGGATTGACTGGGAAAAACTGGAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785043 synonymous SNV . 0 21 hm5C_associated_SNPs_1832 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1832 DeepMRMD:1;iRNA_m5C:1 1833 chr14 67786966 67786966 1 + C A UCEC 67786966 + 67786946 67786986 41 GATTATGACAACGAGGAGATCTTAACCTATGAGGAAATGTC GATTATGACAACGAGGAGATATTAACCTATGAGGAAATGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MPP5 ENSG00000072415 CDS Human protein_coding chr14:67786966 chr14:67786966 synonymous SNV . 0 21 hm5C_associated_SNPs_1833 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1833 DeepMRMD:1;iRNA_m5C:1 1834 chr1 87805775 87805775 1 + C T UCEC 87805775 + 87805755 87805795 41 ATCGCCTGGTCCCGGGAGATCGGTTTCACTACATCAATGGC ATCGCCTGGTCCCGGGAGATTGGTTTCACTACATCAATGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMO4 ENSG00000143013 CDS Human protein_coding chr1:87805775 chr1:87805775 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1834 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1834 DeepMRMD:1;iRNA_m5C:1 1835 chr7 142460772 142460772 1 + C A UCEC 142460772 + 142460752 142460792 41 CAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCCA CAGCTCCAAGGAGTTGTCTCATGGGGTGATGGCTGTGCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460772 chr7:142460772 synonymous SNV . 0 21 hm5C_associated_SNPs_1835 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1835 DeepMRMD:1;iRNA_m5C:1 1836 chrX 102632726 102632726 1 + C T UCEC 102632726 + 102632706 102632746 41 AGCTCTCTAATCACCATGACCATCATGATGAATTTTGCCTT AGCTCTCTAATCACCATGACTATCATGATGAATTTTGCCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632726 chrX:102632726 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1836 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1836 DeepMRMD:1;iRNA_m5C:1 1837 chr4 48384660 48384660 1 + C A UCEC 48384660 + 48384640 48384680 41 CAATTCTACAAGACGGGGTACTTTTAGTGATCAGGAACTTG CAATTCTACAAGACGGGGTAATTTTAGTGATCAGGAACTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48384660 chr4:48384660 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1837 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1837 DeepMRMD:1;iRNA_m5C:1 1838 chr12 104336862 104336862 1 + C A UCEC 104336862 + 104336842 104336882 41 AATTTTGTAGGCTGAATCTTCTCCATTTGTTGAGCGACTTC AATTTTGTAGGCTGAATCTTATCCATTTGTTGAGCGACTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104336862 chr12:104336862 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1838 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1838 DeepMRMD:1;iRNA_m5C:1 1839 chr1 28564465 28564465 1 + C T UCEC 28564465 + 28564445 28564485 41 GAGCGCCATAAGCAGAAGATCAAAATGCTAAAACATGATGA GAGCGCCATAAGCAGAAGATTAAAATGCTAAAACATGATGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATPIF1 ENSG00000130770 CDS Human protein_coding chr1:28564465 chr1:28564465 synonymous SNV . 0 21 hm5C_associated_SNPs_1839 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1839 DeepMRMD:1;iRNA_m5C:1 1840 chr19 38572457 38572457 1 + C T UCEC 38572457 + 38572437 38572477 41 GGCGTGCGCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGA GGCGTGCGCGCAAGGGTGGCTGACTGGCCGCCCAAGCGGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572457 chr19:38572457 synonymous SNV . 0 21 hm5C_associated_SNPs_1840 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_1840 DeepMRMD:1;iRNA_m5C:1 1841 chrX 21874808 21874808 1 + C T UCEC 21874808 + 21874788 21874828 41 GCAGCCGCTCTTCACGAACACGGGCTATGGCGACCACGACC GCAGCCGCTCTTCACGAACATGGGCTATGGCGACCACGACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YY2 ENSG00000230797 CDS Human protein_coding chrX:21874808 chrX:21874808 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_1841 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1841 DeepMRMD:1;iRNA_m5C:1 1842 chr10 118306831 118306831 1 + C T UCEC 118306831 + 118306811 118306851 41 GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC GAAGTTTGCTACGAAAGACTTGGCTGCTTCAGTGATGACTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306831 chr10:118306831 synonymous SNV . 0 21 hm5C_associated_SNPs_1842 0 0 0 0 1 unknown 1 0 1 1 hm5C_site_1842 DeepMRMD:1;iRNA_m5C:1 1843 chr20 44430647 44430647 1 + C T UCEC 44430647 + 44430627 44430667 41 TTTTGTGGCAGAGGAAAGGACGGCCTCCTGGACACATCCTG TTTTGTGGCAGAGGAAAGGATGGCCTCCTGGACACATCCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44430647 chr20:44430647 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1843 0 0 1 0 2 cytosol 1 0 1 1 hm5C_site_1843 DeepMRMD:1;iRNA_m5C:1 1844 chr11 110035730 110035730 1 + C T UCEC 110035730 + 110035710 110035750 41 TGTGGGAGCAGTGACTCCTACGTGGGTTACAATGACCGGTC TGTGGGAGCAGTGACTCCTATGTGGGTTACAATGACCGGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035730 chr11:110035730 synonymous SNV . 0 21 hm5C_associated_SNPs_1844 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1844 DeepMRMD:1;iRNA_m5C:1 1845 chr3 49728616 49728616 1 + C T UCEC 49728616 + 49728596 49728636 41 AGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCAA AGGATGGCATCCAAGGGGGCTGGCATGTCTTTCTCCCGCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49728616 chr3:49728616 synonymous SNV . 0 21 hm5C_associated_SNPs_1845 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1845 DeepMRMD:1;iRNA_m5C:1 1846 chr17 61489416 61489416 1 + C T UCEC 61489416 + 61489396 61489436 41 ACGTTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTG ACGTTGACTACAGTGGAATGTGCCCTTTGGATAGGGCAGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61489416 chr17:61489416 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1846 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1846 DeepMRMD:1;iRNA_m5C:1 1847 chr17 37070657 37070657 1 + C T UCEC 37070657 + 37070637 37070677 41 GGAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC GGAGCCAGAGCGTCGGGATTTACAGGACGGCAGCAGCTACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070657 chr17:37070657 nonsynonymous SNV 0.136 1 21 hm5C_associated_SNPs_1847 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1847 DeepMRMD:1;iRNA_m5C:1 1848 chr10 80968135 80968135 1 + C T UCEC 80968135 + 80968115 80968155 41 TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGCGGAGAC TCCACAATGCCGCCACGGAGTTGCTGGACTGGTGCGGAGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:80968135 chr10:80968135 synonymous SNV . 0 21 hm5C_associated_SNPs_1848 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1848 DeepMRMD:1;iRNA_m5C:1 1849 chr14 23240646 23240646 1 + C A UCEC 23240646 + 23240626 23240666 41 TTCTCTTCTCCCCTCAGGTCCTTTACGACAGACCTTTACCC TTCTCTTCTCCCCTCAGGTCATTTACGACAGACCTTTACCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240646 chr14:23240646 nonsynonymous SNV 0.866 4 21 hm5C_associated_SNPs_1849 0 0 1 1 1 Cytosol 1 0 1 1 hm5C_site_1849 DeepMRMD:1;iRNA_m5C:1 1850 chr17 73780936 73780936 1 + C T UCEC 73780936 + 73780916 73780956 41 ACTGAATAATAAAAGGGGAGCGGCGAAGAGGCAGGAAGACA ACTGAATAATAAAAGGGGAGTGGCGAAGAGGCAGGAAGACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73780936 chr17:73780936 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_1850 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1850 DeepMRMD:1;iRNA_m5C:1 1851 chr11 244747 244747 1 + C A UCEC 244747 + 244727 244767 41 TAAAATTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA TAAAATTAAACATCGGGGACATACAGGTTACAAAGGTGAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:244747 chr11:244747 nonsynonymous SNV 0.970 1 21 hm5C_associated_SNPs_1851 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1851 DeepMRMD:1;iRNA_m5C:1 1852 chr19 39215182 39215182 1 + C T UCEC 39215182 + 39215162 39215202 41 GCCAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATG GCCAGGCCAATGTTGTGGGGTCCTGGATCCAGACCAAGATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215182 chr19:39215182 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_1852 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1852 DeepMRMD:1;iRNA_m5C:1 1853 chr14 102478270 102478270 1 + C T UCEC 102478270 + 102478250 102478290 41 CCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGCATGG CCTGATGATGGTGGGGCCCTTGGGAAGTGGGAAGAGCATGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478270 chr14:102478270 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_1853 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1853 DeepMRMD:1;iRNA_m5C:1 1854 chr1 91980446 91980446 1 + C T UCEC 91980446 + 91980426 91980466 41 AAAAAAGAAGGCTATTTCTACAAAAGTTATGAATAGTGCTG AAAAAAGAAGGCTATTTCTATAAAAGTTATGAATAGTGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC7 ENSG00000097046 CDS Human protein_coding chr1:91980446 chr1:91980446 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_1854 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1854 DeepMRMD:1;iRNA_m5C:1 1855 chr1 120286594 120286594 1 + C A UCEC 120286594 + 120286574 120286614 41 ACCTGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCT ACCTGGCACGTCATGGGCATATCCTCCTTGCTGCCCAGCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286594 chr1:120286594 synonymous SNV . 0 21 hm5C_associated_SNPs_1855 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1855 DeepMRMD:1;iRNA_m5C:1 1856 chr18 8638254 8638254 1 + C A UCEC 8638254 + 8638234 8638274 41 CCAAGACCACATGTCCGATGCTGTTGATTTCCTACTTTGGA CCAAGACCACATGTCCGATGATGTTGATTTCCTACTTTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB12 ENSG00000206418 CDS Human protein_coding chr18:8638254 chr18:8638254 stopgain 0.999 0 21 hm5C_associated_SNPs_1856 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1856 DeepMRMD:1;iRNA_m5C:1 1857 chr20 2097414 2097414 1 + C T UCEC 2097414 + 2097394 2097434 41 GTATGTCCTGTCCCGGAGGCCAGACCCAGCCACCAACAAAA GTATGTCCTGTCCCGGAGGCTAGACCCAGCCACCAACAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STK35 ENSG00000125834 CDS Human protein_coding chr20:2097414 chr20:2097414 nonsynonymous SNV 0.884 1 21 hm5C_associated_SNPs_1857 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1857 DeepMRMD:1;iRNA_m5C:1 1858 chr11 9462065 9462065 1 + C A UCEC 9462065 + 9462045 9462085 41 AGAATATTTGGAGATTCTGGCTAAGCAGGCTGGTGAAGATG AGAATATTTGGAGATTCTGGATAAGCAGGCTGGTGAAGATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462065 chr11:9462065 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1858 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1858 DeepMRMD:1;iRNA_m5C:1 1859 chr22 24455824 24455824 1 + C A UCEC 24455824 + 24455804 24455844 41 CTCAGCCACATTCATGGAATCTGGTAGGAATCGAGCAGTGT CTCAGCCACATTCATGGAATATGGTAGGAATCGAGCAGTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24455824 chr22:24455824 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1859 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1859 DeepMRMD:1;iRNA_m5C:1 1860 chr15 50789404 50789404 1 + C T UCEC 50789404 + 50789384 50789424 41 AGAAATCTGGAAGTTACCACCTGTGCTTTTAGTGCATCTGA AGAAATCTGGAAGTTACCACTTGTGCTTTTAGTGCATCTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50789404 chr15:50789404 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_1860 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1860 DeepMRMD:1;iRNA_m5C:1 1861 chr16 2284212 2284212 1 + C T UCEC 2284212 + 2284192 2284232 41 GCGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCTCAA GCGCAGTGTGGCAAGGCCTTTCCCAAGGCCTACCTGCTCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284212 chr16:2284212 synonymous SNV . 0 21 hm5C_associated_SNPs_1861 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1861 DeepMRMD:1;iRNA_m5C:1 1862 chr1 44436760 44436760 1 + C A UCEC 44436760 + 44436740 44436780 41 CTTCGTGCTTCGTCAACGTTCTGTGGCCTTGGAGCTCTGTG CTTCGTGCTTCGTCAACGTTATGTGGCCTTGGAGCTCTGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPH2 ENSG00000132768 CDS Human protein_coding chr1:44436760 chr1:44436760 nonsynonymous SNV 0.004 1 21 hm5C_associated_SNPs_1862 0 0 1 0 0 nucleolus 1 0 1 1 hm5C_site_1862 DeepMRMD:1;iRNA_m5C:1 1863 chrX 49142948 49142948 1 + C A UCEC 49142948 + 49142928 49142968 41 GGACAGCCCCAAGGAATCGCCTCCAGAAATCCTCTCCGGGG GGACAGCCCCAAGGAATCGCATCCAGAAATCCTCTCCGGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control PPP1R3F ENSG00000049769 CDS Human protein_coding chrX:49142948 chrX:49142948 nonsynonymous SNV 0.996 3 21 hm5C_associated_SNPs_1863 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1863 DeepMRMD:1;iRNA_m5C:1 1864 chr1 223943292 223943292 1 + C T UCEC 223943292 + 223943272 223943312 41 TGGGGCTCATTCAGAAGCACCGACGGCGGCAGAGGAAGATG TGGGGCTCATTCAGAAGCACTGACGGCGGCAGAGGAAGATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943292 chr1:223943292 stopgain 1.000 1 21 hm5C_associated_SNPs_1864 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1864 DeepMRMD:1;iRNA_m5C:1 1865 chr1 32626288 32626288 1 + C T UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCTTTAATCCTTTGTTAACGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626288 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1865 0 0 1 0 3 Cytosol 1 0 1 1 hm5C_site_1865 DeepMRMD:1;iRNA_m5C:1 1866 chr5 150027743 150027743 1 + C T UCEC 150027743 + 150027723 150027763 41 AAGCCTCCCAGGCCATGCACCGGGGCTCAGCCTGAGTTCCA AAGCCTCCCAGGCCATGCACTGGGGCTCAGCCTGAGTTCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYNPO ENSG00000171992 CDS Human protein_coding chr5:150027743 chr5:150027743 nonsynonymous SNV 0.039 1 21 hm5C_associated_SNPs_1866 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1866 DeepMRMD:1;iRNA_m5C:1 1867 chr22 42301542 42301542 1 + C T UCEC 42301542 + 42301522 42301562 41 TCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGCCGAA TCCTCTCCTCCCCGGGCCAGTGGGCAGTGCTGCTGGCCGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42301542 chr22:42301542 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1867 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1867 DeepMRMD:1;iRNA_m5C:1 1868 chr19 42373186 42373186 1 + C T UCEC 42373186 + 42373166 42373206 41 GGGGGACGTCAGAGAAACGGCGTCATGCCCAGCCACTTCAG GGGGGACGTCAGAGAAACGGTGTCATGCCCAGCCACTTCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373186 chr19:42373186 nonsynonymous SNV 0.990 1 21 hm5C_associated_SNPs_1868 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1868 DeepMRMD:1;iRNA_m5C:1 1869 chr19 13054422 13054422 1 + C T UCEC 13054422 + 13054402 13054442 41 TACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAA TACGCTGAGGAGTTTGGCAATGAGACGTGGGGCGTAACAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054422 chr19:13054422 synonymous SNV . 0 21 hm5C_associated_SNPs_1869 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1869 DeepMRMD:1;iRNA_m5C:1 1870 chr10 75542205 75542205 1 + C G UCEC 75542205 + 75542185 75542225 41 GCCGCGAGGGCTCAGGTGACCGATGGCTCCTGGGGTGCTTT GCCGCGAGGGCTCAGGTGACGGATGGCTCCTGGGGTGCTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CHCHD1 ENSG00000172586 CDS Human protein_coding chr10:75542205 chr10:75542205 synonymous SNV . 0 21 hm5C_associated_SNPs_1870 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1870 DeepMRMD:1;iRNA_m5C:1 1871 chr11 12379996 12379996 1 + C A UCEC 12379996 + 12379976 12380016 41 CACTTTGAAAGCTTCGTATTCTCCAGAGGCTGTCAGCTGAG CACTTTGAAAGCTTCGTATTATCCAGAGGCTGTCAGCTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MICALCL ENSG00000133808 CDS Human protein_coding chr11:12379996 chr11:12379996 nonsynonymous SNV 0.754 0 21 hm5C_associated_SNPs_1871 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1871 DeepMRMD:1;iRNA_m5C:1 1872 chr7 4796801 4796801 1 + C T UCEC 4796801 + 4796781 4796821 41 TCCTGCTTCCGCACCCCCTTCGGGCCTCTGTCCTCAAGGTA TCCTGCTTCCGCACCCCCTTTGGGCCTCTGTCCTCAAGGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796801 chr7:4796801 synonymous SNV . 0 21 hm5C_associated_SNPs_1872 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1872 DeepMRMD:1;iRNA_m5C:1 1873 chr17 37359313 37359313 1 + C T UCEC 37359313 + 37359293 37359333 41 TGAGGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATAC TGAGGAGAATGAGGATTTTGTGCCGGCTGCTCAGAAGATAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359313 chr17:37359313 nonsynonymous SNV 0.621 1 21 hm5C_associated_SNPs_1873 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1873 DeepMRMD:1;iRNA_m5C:1 1874 chr15 43668796 43668796 1 + C T UCEC 43668796 + 43668776 43668816 41 TCTGTTTTGCAGCCTTATCGCCAAGCACTGCTTGATTTGGA TCTGTTTTGCAGCCTTATCGTCAAGCACTGCTTGATTTGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43668796 chr15:43668796 synonymous SNV . 0 21 hm5C_associated_SNPs_1874 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1874 DeepMRMD:1;iRNA_m5C:1 1875 chr15 41192202 41192202 1 + C T UCEC 41192202 + 41192182 41192222 41 ACCACGTGCAACGGGAGGCCCGAGATGTCTGGCGCACCTAT ACCACGTGCAACGGGAGGCCTGAGATGTCTGGCGCACCTAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192202 chr15:41192202 stopgain 0.996 1 21 hm5C_associated_SNPs_1875 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_1875 DeepMRMD:1;iRNA_m5C:1 1876 chr22 29695781 29695781 1 + C T UCEC 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGGCCCCCTGGACTTTTGATGGAACAGATGGGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695781 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1876 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1876 DeepMRMD:1;iRNA_m5C:1 1877 chr16 31196312 31196312 1 + C T UCEC 31196312 + 31196292 31196332 41 AGTGGTGGTGGCAGTGGTGGCGGTTATGGCAATCAAGACCA AGTGGTGGTGGCAGTGGTGGTGGTTATGGCAATCAAGACCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control FUS ENSG00000089280 CDS Human protein_coding chr16:31196312 chr16:31196312 synonymous SNV . 0 21 hm5C_associated_SNPs_1877 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1877 DeepMRMD:1;iRNA_m5C:1 1878 chr20 36662465 36662465 1 + C A UCEC 36662465 + 36662445 36662485 41 CCACCGCAAGCACGCGGGACCCATCGTCTCCGTGTGGCACC CCACCGCAAGCACGCGGGACACATCGTCTCCGTGTGGCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36662465 chr20:36662465 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1878 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1878 DeepMRMD:1;iRNA_m5C:1 1879 chr19 36510139 36510139 1 + C T UCEC 36510139 + 36510119 36510159 41 ATCGTTCTTGCCCTCAGGTTCGTCCAGCTCCACGCCCACCC ATCGTTCTTGCCCTCAGGTTTGTCCAGCTCCACGCCCACCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510139 chr19:36510139 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_1879 0 0 0 0 1 unknown 1 0 1 1 hm5C_site_1879 DeepMRMD:1;iRNA_m5C:1 1880 chr4 119200355 119200355 1 + C T UCEC 119200355 + 119200335 119200375 41 GATTGTGAATCTCCATGTATCTTTGGGACCTGTCAGCCGTG GATTGTGAATCTCCATGTATTTTTGGGACCTGTCAGCCGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200355 chr4:119200355 . . 0 21 hm5C_associated_SNPs_1880 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_1880 DeepMRMD:1;iRNA_m5C:1 1881 chr14 64909115 64909115 1 + C T UCEC 64909115 + 64909095 64909135 41 TCAAGATGCACGGGGGCGGCCCCACGGTGAGTGGTGGGTTG TCAAGATGCACGGGGGCGGCTCCACGGTGAGTGGTGGGTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64909115 chr14:64909115 nonsynonymous SNV 0.970 2 21 hm5C_associated_SNPs_1881 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1881 DeepMRMD:1;iRNA_m5C:1 1882 chr1 100740467 100740467 1 + C A UCEC 100740467 + 100740447 100740487 41 ATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATATGG ATAAATTTAACTGAGCGTGGATGTGTGACTAAGATATATGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100740467 chr1:100740467 synonymous SNV . 0 21 hm5C_associated_SNPs_1882 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1882 DeepMRMD:1;iRNA_m5C:1 1883 chr17 73058313 73058313 1 + C T UCEC 73058313 + 73058293 73058333 41 AATAATTCTACCAATGGCATCGTCATAGAGCCGAGCGAAAA AATAATTCTACCAATGGCATTGTCATAGAGCCGAGCGAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058313 chr17:73058313 synonymous SNV . 0 21 hm5C_associated_SNPs_1883 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1883 DeepMRMD:1;iRNA_m5C:1 1884 chr17 37360824 37360824 1 + C T UCEC 37360824 + 37360804 37360844 41 AGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCTCCAG AGACCAAGGAAGCACGCAAGTGCCGTGAAGAGCGCCTCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360824 chr17:37360824 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1884 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1884 DeepMRMD:1;iRNA_m5C:1 1885 chr7 16823094 16823094 1 + C T UCEC 16823094 + 16823074 16823114 41 GAACCAGAAAGACCCCCGCGCGAATCCTAGTGCATTCCTTT GAACCAGAAAGACCCCCGCGTGAATCCTAGTGCATTCCTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16823094 chr7:16823094 nonsynonymous SNV 0.925 2 21 hm5C_associated_SNPs_1885 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1885 DeepMRMD:1;iRNA_m5C:1 1886 chr17 40714704 40714704 1 + C T UCEC 40714704 + 40714684 40714724 41 TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCG TGGCCTCCCTAGCCCCTCGCTTGGCCTCCATCCTGACCTCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40714704 chr17:40714704 synonymous SNV . 0 21 hm5C_associated_SNPs_1886 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1886 DeepMRMD:1;iRNA_m5C:1 1887 chr5 71491927 71491927 1 + C T UCEC 71491927 + 71491907 71491947 41 CCTGAGGAGCTGGAGCCCGTCGAGAAGCAGGGAGTAGACGA CCTGAGGAGCTGGAGCCCGTTGAGAAGCAGGGAGTAGACGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71491927 chr5:71491927 synonymous SNV . 0 21 hm5C_associated_SNPs_1887 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1887 DeepMRMD:1;iRNA_m5C:1 1888 chr7 142460307 142460307 1 + C T UCEC 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGTCTGGATGCTCCTGTGCTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460307 synonymous SNV . 0 21 hm5C_associated_SNPs_1888 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1888 DeepMRMD:1;iRNA_m5C:1 1889 chr19 18542868 18542868 1 + C T UCEC 18542868 + 18542848 18542888 41 CCTCCTCGTGGCATGGCCAGCGTGGGGCCCCAGGTAAGAGT CCTCCTCGTGGCATGGCCAGTGTGGGGCCCCAGGTAAGAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18542868 chr19:18542868 synonymous SNV . 0 21 hm5C_associated_SNPs_1889 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1889 DeepMRMD:1;iRNA_m5C:1 1890 chr1 22332195 22332195 1 + C T UCEC 22332195 + 22332175 22332215 41 TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC TGGTGTTGGGTGAGTACAACTTTGCTGTGAAGGAGGGCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332195 chr1:22332195 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_1890 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1890 DeepMRMD:1;iRNA_m5C:1 1891 chr1 40878720 40878720 1 + C T UCEC 40878720 + 40878700 40878740 41 GACAAGTGGAAAAGAGGGAGCGAACCAGTTCCAGAAAAAAA GACAAGTGGAAAAGAGGGAGTGAACCAGTTCCAGAAAAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40878720 chr1:40878720 synonymous SNV . 0 21 hm5C_associated_SNPs_1891 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1891 DeepMRMD:1;iRNA_m5C:1 1892 chr2 32824931 32824931 1 + C T UCEC 32824931 + 32824911 32824951 41 GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCT GAGACAACTGGTGGTCATAGTGTGCGATTCAATCCAAACCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824931 chr2:32824931 synonymous SNV . 0 21 hm5C_associated_SNPs_1892 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1892 DeepMRMD:1;iRNA_m5C:1 1893 chr6 142758630 142758630 1 + C T UCEC 142758630 + 142758610 142758650 41 ATGTTCAGAAACAGTGGCGGCAGCATCTCTGCTGTGGTAGA ATGTTCAGAAACAGTGGCGGTAGCATCTCTGCTGTGGTAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142758630 chr6:142758630 stopgain 0.991 1 21 hm5C_associated_SNPs_1893 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1893 DeepMRMD:1;iRNA_m5C:1 1894 chr1 168154103 168154103 1 + C T UCEC 168154103 + 168154083 168154123 41 GGGAACCTTACTTGGAGAATCTCTTAAGTTAAAGGTAAATC GGGAACCTTACTTGGAGAATTTCTTAAGTTAAAGGTAAATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TIPRL ENSG00000143155 CDS Human protein_coding chr1:168154103 chr1:168154103 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1894 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1894 DeepMRMD:1;iRNA_m5C:1 1895 chr3 138341068 138341068 1 + C T UCEC 138341068 + 138341048 138341088 41 TGGATGTTCAAATTAGTGGGCAAAGAAACATTCTATGTTGG TGGATGTTCAAATTAGTGGGTAAAGAAACATTCTATGTTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138341068 chr3:138341068 synonymous SNV . 0 21 hm5C_associated_SNPs_1895 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1895 DeepMRMD:1;iRNA_m5C:1 1896 chr5 65105431 65105431 1 + C T UCEC 65105431 + 65105411 65105451 41 GAAAATTGGGTGTGGGACGTCGATTCCCTCCGAAGATTGTC GAAAATTGGGTGTGGGACGTTGATTCCCTCCGAAGATTGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65105431 chr5:65105431 synonymous SNV . 0 21 hm5C_associated_SNPs_1896 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1896 DeepMRMD:1;iRNA_m5C:1 1897 chr17 18638333 18638333 1 + C T UCEC 18638333 + 18638313 18638353 41 TCCTGCACTGGCGGCAGGTGCTGTCCCAGCAGAGTCTGTAC TCCTGCACTGGCGGCAGGTGTTGTCCCAGCAGAGTCTGTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18638333 chr17:18638333 synonymous SNV . 0 21 hm5C_associated_SNPs_1897 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_1897 DeepMRMD:1;iRNA_m5C:1 1898 chr10 115485145 115485145 1 + C T UCEC 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATACAAATGTCGCCTGCTTCGCCTGCATCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485145 nonsynonymous SNV 0.920 1 21 hm5C_associated_SNPs_1898 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_1898 DeepMRMD:1;iRNA_m5C:1 1899 chr10 104141008 104141008 1 + C A UCEC 104141008 + 104140988 104141028 41 ATTCCATCTGAGCTGGGGGCCTGTGGTGAGTCTCTCTAGCC ATTCCATCTGAGCTGGGGGCATGTGGTGAGTCTCTCTAGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104141008 chr10:104141008 synonymous SNV . 0 21 hm5C_associated_SNPs_1899 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1899 DeepMRMD:1;iRNA_m5C:1 1900 chr1 224380097 224380097 1 + C T UCEC 224380097 + 224380077 224380117 41 ACAATTCCTGGATAAAAGTACTGTATGATTTTGTGATGGAT ACAATTCCTGGATAAAAGTATTGTATGATTTTGTGATGGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEGS1 ENSG00000143753 CDS Human protein_coding chr1:224380097 chr1:224380097 synonymous SNV . 0 21 hm5C_associated_SNPs_1900 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1900 DeepMRMD:1;iRNA_m5C:1 1901 chr1 203821365 203821365 1 + C T UCEC 203821365 + 203821345 203821385 41 AGCATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAA AGCATGAAAACTCGCCGACTTAGCTCTGCCTCAACAGGAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203821365 chr1:203821365 synonymous SNV . 0 21 hm5C_associated_SNPs_1901 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1901 DeepMRMD:1;iRNA_m5C:1 1902 chr7 130021554 130021554 1 + C A UCEC 130021554 + 130021534 130021574 41 AGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCACGGCAT AGCATCCAGGCGGTCAAGATATTTCTGGAGTCCCACGGCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021554 chr7:130021554 synonymous SNV . 0 21 hm5C_associated_SNPs_1902 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1902 DeepMRMD:1;iRNA_m5C:1 1903 chr7 142460379 142460379 1 + C A UCEC 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGCAACATGTTATGTGTGGGCTTCCTTGAGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460379 nonsynonymous SNV 0.036 1 21 hm5C_associated_SNPs_1903 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1903 DeepMRMD:1;iRNA_m5C:1 1904 chr18 77096680 77096680 1 + C T UCEC 77096680 + 77096660 77096700 41 CCTCGTGGTTGCAAAGAAGGCGTTGACAGAGGAGCAGTACC CCTCGTGGTTGCAAAGAAGGTGTTGACAGAGGAGCAGTACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP9B ENSG00000166377 CDS Human protein_coding chr18:77096680 chr18:77096680 nonsynonymous SNV 0.041 0 21 hm5C_associated_SNPs_1904 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1904 DeepMRMD:1;iRNA_m5C:1 1905 chr3 50255191 50255191 1 + C T UCEC 50255191 + 50255171 50255211 41 AACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCT AACTTCAGCCACGTGGAGATTGTGAAGGAGAAGGTGCAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255191 chr3:50255191 . . 0 21 hm5C_associated_SNPs_1905 0 0 0 0 2 exosome 1 0 1 1 hm5C_site_1905 DeepMRMD:1;iRNA_m5C:1 1906 chr7 142459763 142459763 1 + C A UCEC 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA GACATCATGTTAATCAAGCTATCCTCACGTGCAGTAATCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459763 synonymous SNV . 0 21 hm5C_associated_SNPs_1906 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1906 DeepMRMD:1;iRNA_m5C:1 1907 chr2 217311766 217311766 1 + C T UCEC 217311766 + 217311746 217311786 41 CAAGAGGGTGATCCTGTTGTCGGGCACACCAGCCATGTCCC CAAGAGGGTGATCCTGTTGTTGGGCACACCAGCCATGTCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311766 chr2:217311766 nonsynonymous SNV 0.973 5 21 hm5C_associated_SNPs_1907 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_1907 DeepMRMD:1;iRNA_m5C:1 1908 chr7 98528424 98528424 1 + C A UCEC 98528424 + 98528404 98528444 41 AGACATTCCTGAAAGCACTTCTCTTTGTCATGATGGACTTA AGACATTCCTGAAAGCACTTATCTTTGTCATGATGGACTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528424 chr7:98528424 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_1908 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1908 DeepMRMD:1;iRNA_m5C:1 1909 chr3 186338682 186338682 1 + C A UCEC 186338682 + 186338662 186338702 41 TGCTGCTGGGCCAGTGGTTCCTCCATGTCCGGGGAGGATCA TGCTGCTGGGCCAGTGGTTCATCCATGTCCGGGGAGGATCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control AHSG ENSG00000145192 CDS Human protein_coding chr3:186338682 chr3:186338682 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_1909 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1909 DeepMRMD:1;iRNA_m5C:1 1910 chr20 4680555 4680555 1 + C T UCEC 4680555 + 4680535 4680575 41 GGCCTATTACCAGAGAGGATCGAGCATGGTCCTCTTCTCCT GGCCTATTACCAGAGAGGATTGAGCATGGTCCTCTTCTCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PRNP ENSG00000171867 CDS Human protein_coding chr20:4680555 chr20:4680555 nonsynonymous SNV 0.018 3 21 hm5C_associated_SNPs_1910 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1910 DeepMRMD:1;iRNA_m5C:1 1911 chr19 971942 971942 1 + C T UCEC 971942 + 971922 971962 41 CCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAGCAGCAA CCCAACAAAGGAGGCGGCGGTGGCGGCGGCAGCAGCAGCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3A ENSG00000116017 CDS Human protein_coding chr19:971942 chr19:971942 synonymous SNV . 0 21 hm5C_associated_SNPs_1911 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1911 DeepMRMD:1;iRNA_m5C:1 1912 chr17 17046982 17046982 1 + C T UCEC 17046982 + 17046962 17047002 41 GTCCACGGAGCCCTCCGTGACGGTGAGCCCAGGCGCCGCGT GTCCACGGAGCCCTCCGTGATGGTGAGCCCAGGCGCCGCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17046982 chr17:17046982 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1912 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1912 DeepMRMD:1;iRNA_m5C:1 1913 chrX 48457774 48457774 1 + C T UCEC 48457774 + 48457754 48457794 41 ATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGTC ATCCTCGGGCCCTGGGGGCCTGTGGGCACCGTCGTTCTGTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457774 chrX:48457774 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_1913 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1913 DeepMRMD:1;iRNA_m5C:1 1914 chr9 138378966 138378966 1 + C G UCEC 138378966 + 138378946 138378986 41 ACCGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCT ACCGCTCTTGGGACAGGGGGGCCAGCCAGGCCAGAGGTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378966 chr9:138378966 synonymous SNV . 0 21 hm5C_associated_SNPs_1914 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1914 DeepMRMD:1;iRNA_m5C:1 1915 chr19 19308370 19308370 1 + C T UCEC 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGACGAGCGCGGCTTCACTCCCCTCATCTGGGCCTCCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308370 synonymous SNV . 0 21 hm5C_associated_SNPs_1915 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1915 DeepMRMD:1;iRNA_m5C:1 1916 chr10 115804875 115804875 1 + C T UCEC 115804875 + 115804855 115804895 41 GCGCTCAAGACGCTGGGCATCATCATGGGCGTCTTCACGCT GCGCTCAAGACGCTGGGCATTATCATGGGCGTCTTCACGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADRB1 ENSG00000043591 CDS Human protein_coding chr10:115804875 chr10:115804875 synonymous SNV . 0 21 hm5C_associated_SNPs_1916 0 0 0 0 0 Nucleus 1 0 1 1 hm5C_site_1916 DeepMRMD:1;iRNA_m5C:1 1917 chr17 7254700 7254700 1 + C A UCEC 7254700 + 7254680 7254720 41 TGAGCCGTCGCAGTCATGACCTCCACACGCTGTGACCCGAG TGAGCCGTCGCAGTCATGACATCCACACGCTGTGACCCGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7254700 chr17:7254700 nonsynonymous SNV 0.489 0 21 hm5C_associated_SNPs_1917 0 0 0 0 1 nucleus 1 0 1 1 hm5C_site_1917 DeepMRMD:1;iRNA_m5C:1 1918 chr17 57644036 57644036 1 + C A UCEC 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACTACTCCAACTTTTCATATTCAGAAACAAAGAAAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644036 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1918 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1918 DeepMRMD:1;iRNA_m5C:1 1919 chr1 15655875 15655875 1 + C A UCEC 15655875 + 15655855 15655895 41 TATCCTGTTGCAGCCATGACCTGAAGAAGGAGGTCGACCTT TATCCTGTTGCAGCCATGACATGAAGAAGGAGGTCGACCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15655875 chr1:15655875 nonsynonymous SNV 0.147 5 21 hm5C_associated_SNPs_1919 0 0 0 0 1 cytosol 1 0 1 1 hm5C_site_1919 DeepMRMD:1;iRNA_m5C:1 1920 chr4 148786063 148786063 1 + C T UCEC 148786063 + 148786043 148786083 41 CTCTCGAGTATGTGTGTAAGCTGCAGGAAATCCAAGAAAGA CTCTCGAGTATGTGTGTAAGTTGCAGGAAATCCAAGAAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148786063 chr4:148786063 synonymous SNV . 0 21 hm5C_associated_SNPs_1920 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1920 DeepMRMD:1;iRNA_m5C:1 1921 chr19 7923125 7923125 1 + C T UCEC 7923125 + 7923105 7923145 41 AGGAGAACTACGTCATCAAGCGGGAGCTGGCGGTGGTGCGG AGGAGAACTACGTCATCAAGTGGGAGCTGGCGGTGGTGCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control EVI5L ENSG00000142459 CDS Human protein_coding chr19:7923125 chr19:7923125 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1921 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_1921 DeepMRMD:1;iRNA_m5C:1 1922 chr2 74315033 74315033 1 + C T UCEC 74315033 + 74315013 74315053 41 AGGCCACCACTGCCAGAACGCTGTGATCGTCATCCTCATCC AGGCCACCACTGCCAGAACGTTGTGATCGTCATCCTCATCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74315033 chr2:74315033 nonsynonymous SNV 0.881 3 21 hm5C_associated_SNPs_1922 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1922 DeepMRMD:1;iRNA_m5C:1 1923 chr19 7923165 7923165 1 + C T UCEC 7923165 + 7923145 7923185 41 GCAGCAGTGCAGCTCGGCGGCCGAGGACCTGCAGAAGGCAC GCAGCAGTGCAGCTCGGCGGTCGAGGACCTGCAGAAGGCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control EVI5L ENSG00000142459 CDS Human protein_coding chr19:7923165 chr19:7923165 nonsynonymous SNV 0.139 1 21 hm5C_associated_SNPs_1923 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_1923 DeepMRMD:1;iRNA_m5C:1 1924 chr16 3712061 3712061 1 + G A UCEC 3712061 - 3712041 3712081 41 GGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAG GGGCTGCCCGCCACTTCCTGTGCATGCAGCAGCTGGCCAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712061 chr16:3712061 nonsynonymous SNV 0.988 4 21 hm5C_associated_SNPs_1924 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1924 DeepMRMD:1;iRNA_m5C:1 1925 chr5 153760010 153760010 1 + C T UCEC 153760010 + 153759990 153760030 41 ATCTCTTGGCTTCTTCAGACCGCATTGCTCGGAACCGCAAG ATCTCTTGGCTTCTTCAGACTGCATTGCTCGGAACCGCAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760010 chr5:153760010 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_1925 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1925 DeepMRMD:1;iRNA_m5C:1 1926 chr11 830308 830308 1 + C T UCEC 830308 + 830288 830328 41 ACGAGGAGACGGAGCAGCTTCGGGAGCAGAGCCGGCGCCCG ACGAGGAGACGGAGCAGCTTTGGGAGCAGAGCCGGCGCCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830308 chr11:830308 nonsynonymous SNV 0.020 3 21 hm5C_associated_SNPs_1926 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_1926 DeepMRMD:1;iRNA_m5C:1 1927 chr7 44685003 44685003 1 + C T UCEC 44685003 + 44684983 44685023 41 CAGAGTCCCCTTCCCCTGAGCCGAGGCTCCCTGGCTGCTGT CAGAGTCCCCTTCCCCTGAGTCGAGGCTCCCTGGCTGCTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44685003 chr7:44685003 synonymous SNV . 0 21 hm5C_associated_SNPs_1927 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1927 DeepMRMD:1;iRNA_m5C:1 1928 chr7 79842156 79842156 1 + C A UCEC 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAAATCAAAAAGAGCCATCTCACTATATGCTATCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842156 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1928 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1928 DeepMRMD:1;iRNA_m5C:1 1929 chr9 107515213 107515213 1 + C T UCEC 107515213 + 107515193 107515233 41 TTGCTCATCGAACTGAAGTTCGGAAAGCCTTGGCCAAAGAT TTGCTCATCGAACTGAAGTTTGGAAAGCCTTGGCCAAAGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107515213 chr9:107515213 nonsynonymous SNV 0.925 4 21 hm5C_associated_SNPs_1929 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1929 DeepMRMD:1;iRNA_m5C:1 1930 chrX 47083814 47083814 1 + C A UCEC 47083814 + 47083794 47083834 41 CGAGGACTTGAAGATGGGGTCTGATGGGGAGAGTGACCAGG CGAGGACTTGAAGATGGGGTATGATGGGGAGAGTGACCAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CDK16 ENSG00000102225 CDS Human protein_coding chrX:47083814 chrX:47083814 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1930 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1930 DeepMRMD:1;iRNA_m5C:1 1931 chr9 123898159 123898159 1 + C A UCEC 123898159 + 123898139 123898179 41 TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAAGCTGAG TGCAGCAGACCCAGGGAGATATCAGTGCCTATGAAGCTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898159 chr9:123898159 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1931 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1931 DeepMRMD:1;iRNA_m5C:1 1932 chr5 7885875 7885875 1 + C A UCEC 7885875 + 7885855 7885895 41 GATCTGCCCTAACAGTGATTCTGAGGTACAAAGCCTACTCC GATCTGCCCTAACAGTGATTATGAGGTACAAAGCCTACTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885875 chr5:7885875 nonsynonymous SNV 0.802 1 21 hm5C_associated_SNPs_1932 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1932 DeepMRMD:1;iRNA_m5C:1 1933 chrX 46433942 46433942 1 + C A UCEC 46433942 + 46433922 46433962 41 AATCTTACCACGGCCGCCCTCTTCCGCTGGCGGACTAACAA AATCTTACCACGGCCGCCCTATTCCGCTGGCGGACTAACAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHST7 ENSG00000147119 CDS Human protein_coding chrX:46433942 chrX:46433942 synonymous SNV . 0 21 hm5C_associated_SNPs_1933 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1933 DeepMRMD:1;iRNA_m5C:1 1934 chr21 47986588 47986588 1 + C T UCEC 47986588 + 47986568 47986608 41 ATCCGAGCACACAGGAGCATCGCTGAGTGGTAAGAGCCCAG ATCCGAGCACACAGGAGCATTGCTGAGTGGTAAGAGCCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986588 chr21:47986588 synonymous SNV . 0 21 hm5C_associated_SNPs_1934 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1934 DeepMRMD:1;iRNA_m5C:1 1935 chr14 75360054 75360054 1 + C A UCEC 75360054 + 75360034 75360074 41 CCTCTTTTCATTTTCAGTGTCTGCAGTAAAACCCACTGTTG CCTCTTTTCATTTTCAGTGTATGCAGTAAAACCCACTGTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DLST ENSG00000119689 CDS Human protein_coding chr14:75360054 chr14:75360054 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_1935 0 0 0 1 1 Ribosome 1 0 1 1 hm5C_site_1935 DeepMRMD:1;iRNA_m5C:1 1936 chr14 102499719 102499719 1 + C T UCEC 102499719 + 102499699 102499739 41 AACGAGGTGGAGCAGATGATCCGAGACCTGGAAGCCAGCAT AACGAGGTGGAGCAGATGATTCGAGACCTGGAAGCCAGCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499719 chr14:102499719 synonymous SNV . 0 21 hm5C_associated_SNPs_1936 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1936 DeepMRMD:1;iRNA_m5C:1 1937 chr21 47771442 47771442 1 + C T UCEC 47771442 + 47771422 47771462 41 ATTCTGCCAGGACCAGTAGACAGGAATTGAGTGGTGAGGAA ATTCTGCCAGGACCAGTAGATAGGAATTGAGTGGTGAGGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47771442 chr21:47771442 stopgain 0.105 0 21 hm5C_associated_SNPs_1937 0 0 1 0 2 Exosome 1 0 1 1 hm5C_site_1937 DeepMRMD:1;iRNA_m5C:1 1938 chrX 110951614 110951614 1 + C T UCEC 110951614 + 110951594 110951634 41 TTGCCTCTTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAAC TTGCCTCTTTCGGGCCATTTTGGAGCAGGTAAAAGGAAAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110951614 chrX:110951614 nonsynonymous SNV 0.979 2 21 hm5C_associated_SNPs_1938 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1938 DeepMRMD:1;iRNA_m5C:1 1939 chr1 39927585 39927585 1 + C T UCEC 39927585 + 39927565 39927605 41 CACCAAGTTAGAGATGACTGCTGTGGCTGACATTTTCGACC CACCAAGTTAGAGATGACTGTTGTGGCTGACATTTTCGACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39927585 chr1:39927585 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_1939 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1939 DeepMRMD:1;iRNA_m5C:1 1940 chr11 93494810 93494810 1 + C T UCEC 93494810 + 93494790 93494830 41 TACCTGCAGAGTTTCTCTATCGCATTGATCAACCAAAAGAG TACCTGCAGAGTTTCTCTATTGCATTGATCAACCAAAAGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93494810 chr11:93494810 nonsynonymous SNV 0.931 4 21 hm5C_associated_SNPs_1940 0 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1940 DeepMRMD:1;iRNA_m5C:1 1941 chr10 76468126 76468126 1 + C T UCEC 76468126 + 76468106 76468146 41 AGCCTCTGACTGAATGTATCCGTGCTGGCCACTATGCAGCA AGCCTCTGACTGAATGTATCTGTGCTGGCCACTATGCAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADK ENSG00000156110 CDS Human protein_coding chr10:76468126 chr10:76468126 nonsynonymous SNV 0.996 2 21 hm5C_associated_SNPs_1941 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1941 DeepMRMD:1;iRNA_m5C:1 1942 chr9 108510356 108510356 1 + C A UCEC 108510356 + 108510336 108510376 41 AATGTGTTTTATTTTCAGCCCTGCCAAGGTAACCCTGCTGG AATGTGTTTTATTTTCAGCCATGCCAAGGTAACCCTGCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM38B ENSG00000095209 CDS Human protein_coding chr9:108510356 chr9:108510356 nonsynonymous SNV 0.981 4 21 hm5C_associated_SNPs_1942 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1942 DeepMRMD:1;iRNA_m5C:1 1943 chr11 66555709 66555709 1 + C T UCEC 66555709 + 66555689 66555729 41 CAGCTATTCTCAGGATATGACAGGGGTAACACCCTTCCAGA CAGCTATTCTCAGGATATGATAGGGGTAACACCCTTCCAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66555709 chr11:66555709 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_1943 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1943 DeepMRMD:1;iRNA_m5C:1 1944 chr2 74760068 74760068 1 + C T UCEC 74760068 + 74760048 74760088 41 CAGTGCAGATCCGGCGGGGACGAGAAACACTGACCTTATAT CAGTGCAGATCCGGCGGGGATGAGAAACACTGACCTTATAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control HTRA2 ENSG00000115317 CDS Human protein_coding chr2:74760068 chr2:74760068 stopgain 0.981 0 21 hm5C_associated_SNPs_1944 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_1944 DeepMRMD:1;iRNA_m5C:1 1945 chrX 16804649 16804649 1 + C T UCEC 16804649 + 16804629 16804669 41 GAGGCAGCGCGGGGAAGAGGCGGCGGCGCCGAAGAGGCGAC GAGGCAGCGCGGGGAAGAGGTGGCGGCGCCGAAGAGGCGAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TXLNG ENSG00000086712 CDS Human protein_coding chrX:16804649 chrX:16804649 synonymous SNV . 0 21 hm5C_associated_SNPs_1945 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1945 DeepMRMD:1;iRNA_m5C:1 1946 chr1 223943237 223943237 1 + C T UCEC 223943237 + 223943217 223943257 41 CTGGAGGAGGAGGATGAGGACGAGGAGGATGGGGAGAGCGG CTGGAGGAGGAGGATGAGGATGAGGAGGATGGGGAGAGCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943237 chr1:223943237 synonymous SNV . 0 21 hm5C_associated_SNPs_1946 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1946 DeepMRMD:1;iRNA_m5C:1 1947 chr19 50753062 50753062 1 + C T UCEC 50753062 + 50753042 50753082 41 CTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT CTCGACCTGCAGCCCTGCATTGACCTCATCGAGCGGCCGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753062 chr19:50753062 synonymous SNV . 0 21 hm5C_associated_SNPs_1947 0 0 0 0 1 cytosol 1 0 1 1 hm5C_site_1947 DeepMRMD:1;iRNA_m5C:1 1948 chr11 64802321 64802321 1 + C T UCEC 64802321 + 64802301 64802341 41 TTGTCCTGGGGGCCGTAGGCCGGTTTGAAGCCTCAGTGATC TTGTCCTGGGGGCCGTAGGCTGGTTTGAAGCCTCAGTGATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802321 chr11:64802321 nonsynonymous SNV 0.888 4 21 hm5C_associated_SNPs_1948 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1948 DeepMRMD:1;iRNA_m5C:1 1949 chrX 48564940 48564940 1 + C T UCEC 48564940 + 48564920 48564960 41 TCATAGACAACCTTGACGAGCGGCTGCCCCGCATCGCTTTC TCATAGACAACCTTGACGAGTGGCTGCCCCGCATCGCTTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564940 chrX:48564940 nonsynonymous SNV 0.045 4 21 hm5C_associated_SNPs_1949 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1949 DeepMRMD:1;iRNA_m5C:1 1950 chr20 54970762 54970762 1 + C T UCEC 54970762 + 54970742 54970782 41 CACCCTCGGAGCAGCTCCTGCATCTCATCAAACTCGGTAGA CACCCTCGGAGCAGCTCCTGTATCTCATCAAACTCGGTAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54970762 chr20:54970762 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1950 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1950 DeepMRMD:1;iRNA_m5C:1 1951 chr18 33780019 33780019 1 + C T UCEC 33780019 + 33779999 33780039 41 AGGTCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGG AGGTCAAGTCTGGGCGGTTGTACCCTGTGAGCACGCCTGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780019 chr18:33780019 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_1951 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1951 DeepMRMD:1;iRNA_m5C:1 1952 chr11 119142558 119142558 1 + C T UCEC 119142558 + 119142538 119142578 41 TCGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG TCGGATTACTAAAGCAGATGTTGCGGAATTTTGGAGAAAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119142558 chr11:119142558 nonsynonymous SNV 0.991 5 21 hm5C_associated_SNPs_1952 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1952 DeepMRMD:1;iRNA_m5C:1 1953 chr6 44219833 44219833 1 + C T UCEC 44219833 + 44219813 44219853 41 ACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGA ACCGAGCCCATTGACGAGTATTGTGTGCAGCAGCTCAAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219833 chr6:44219833 synonymous SNV . 0 21 hm5C_associated_SNPs_1953 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1953 DeepMRMD:1;iRNA_m5C:1 1954 chr20 62366054 62366054 1 + C T UCEC 62366054 + 62366034 62366074 41 TGCCCTCTGTCCGTCTCTTGCAGTGGTGGGGTCAGATGCTG TGCCCTCTGTCCGTCTCTTGTAGTGGTGGGGTCAGATGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZGPAT ENSG00000197114 CDS Human protein_coding chr20:62366054 chr20:62366054 nonsynonymous SNV 0.746 0 21 hm5C_associated_SNPs_1954 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1954 DeepMRMD:1;iRNA_m5C:1 1955 chr6 32942278 32942278 1 + C T UCEC 32942278 + 32942258 32942298 41 GCAGGGTTGCTGGGGCTGGGCCCAGAAGCAGCAGCACCAGG GCAGGGTTGCTGGGGCTGGGTCCAGAAGCAGCAGCACCAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32942278 chr6:32942278 synonymous SNV . 0 21 hm5C_associated_SNPs_1955 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1955 DeepMRMD:1;iRNA_m5C:1 1956 chr13 103297358 103297358 1 + C T UCEC 103297358 + 103297338 103297378 41 AGAACTGGGTCCAAACACTGCGGTATCATTCAATGTTTTAG AGAACTGGGTCCAAACACTGTGGTATCATTCAATGTTTTAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103297358 chr13:103297358 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_1956 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1956 DeepMRMD:1;iRNA_m5C:1 1957 chr16 57003897 57003897 1 + C A UCEC 57003897 + 57003877 57003917 41 TCCATAAGCTGCTCCTGCATCTCCAAGGGGAGCGAGAGTAA TCCATAAGCTGCTCCTGCATATCCAAGGGGAGCGAGAGTAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CETP ENSG00000087237 CDS Human protein_coding chr16:57003897 chr16:57003897 nonsynonymous SNV 0.357 2 21 hm5C_associated_SNPs_1957 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_1957 DeepMRMD:1;iRNA_m5C:1 1958 chr16 89620301 89620301 1 + C T UCEC 89620301 + 89620281 89620321 41 GCCCATCTCCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA GCCCATCTCCTTCCCTGAGGTGCAGGAGGGCCTCATGGGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89620301 chr16:89620301 nonsynonymous SNV 0.321 1 21 hm5C_associated_SNPs_1958 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_1958 DeepMRMD:1;iRNA_m5C:1 1959 chr7 91714912 91714912 1 + C A UCEC 91714912 + 91714892 91714932 41 TATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAG TATTCAGCAGGTTTCAGAACATTGGCTAGAAGAGAGAAAAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714912 chr7:91714912 nonsynonymous SNV 0.979 1 21 hm5C_associated_SNPs_1959 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1959 DeepMRMD:1;iRNA_m5C:1 1960 chr1 45242430 45242430 1 + C A UCEC 45242430 + 45242410 45242450 41 AGGTTGGACGTGGGGAATTTCTCCTGGGGCTCAGAGTGTGA AGGTTGGACGTGGGGAATTTATCCTGGGGCTCAGAGTGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45242430 chr1:45242430 nonsynonymous SNV 0.972 2 21 hm5C_associated_SNPs_1960 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1960 DeepMRMD:1;iRNA_m5C:1 1961 chr6 31727628 31727628 1 + C T UCEC 31727628 + 31727608 31727648 41 CACGAGCAGCTGTCTTAACCCGAGTATTGGACCTTGCCTCC CACGAGCAGCTGTCTTAACCTGAGTATTGGACCTTGCCTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31727628 chr6:31727628 stopgain 0.978 0 21 hm5C_associated_SNPs_1961 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1961 DeepMRMD:1;iRNA_m5C:1 1962 chrX 153688733 153688733 1 + C A UCEC 153688733 + 153688713 153688753 41 CGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCTG CGGGCCCATGTCACGGGGCCAGTCGAGGACAACGCTCGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688733 chrX:153688733 synonymous SNV . 0 21 hm5C_associated_SNPs_1962 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1962 DeepMRMD:1;iRNA_m5C:1 1963 chr12 56333039 56333039 1 + C G UCEC 56333039 + 56333019 56333059 41 TCTCTCAAGCTGAGTGGGTCCGGGCTGGGGCCACCACCGTG TCTCTCAAGCTGAGTGGGTCGGGGCTGGGGCCACCACCGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56333039 chr12:56333039 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_1963 0 0 0 0 2 Cytosol 1 0 1 1 hm5C_site_1963 DeepMRMD:1;iRNA_m5C:1 1964 chr14 53184802 53184802 1 + C G UCEC 53184802 + 53184782 53184822 41 TCTTTTGTCATTCTTAGGTACGGGAAAAACACTCTTGGCAC TCTTTTGTCATTCTTAGGTAGGGGAAAAACACTCTTGGCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53184802 chr14:53184802 nonsynonymous SNV 0.763 5 21 hm5C_associated_SNPs_1964 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1964 DeepMRMD:1;iRNA_m5C:1 1965 chr8 94717170 94717170 1 + C T UCEC 94717170 + 94717150 94717190 41 CAACACTCACAGCAAGGAATCGAGAAGCTAAGCAATTAACT CAACACTCACAGCAAGGAATTGAGAAGCTAAGCAATTAACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM92A ENSG00000188343 CDS Human protein_coding chr8:94717170 chr8:94717170 stopgain 0.999 1 21 hm5C_associated_SNPs_1965 0 0 0 1 1 unknown 1 0 1 1 hm5C_site_1965 DeepMRMD:1;iRNA_m5C:1 1966 chr4 148550753 148550753 1 + C A UCEC 148550753 + 148550733 148550773 41 ATTTTTACTATTTTTAGAATCTGTGAGCTGCTTGGTATATA ATTTTTACTATTTTTAGAATATGTGAGCTGCTTGGTATATA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM184C ENSG00000164168 CDS Human protein_coding chr4:148550753 chr4:148550753 synonymous SNV . 0 21 hm5C_associated_SNPs_1966 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_1966 DeepMRMD:1;iRNA_m5C:1 1967 chr1 155258172 155258172 1 + C T UCEC 155258172 + 155258152 155258192 41 CTCAGGGCTCCTGGCCAAACCTCCAAGGACAGCCCAGCCCC CTCAGGGCTCCTGGCCAAACTTCCAAGGACAGCCCAGCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout HCN3 ENSG00000143630 CDS Human protein_coding chr1:155258172 chr1:155258172 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_1967 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_1967 DeepMRMD:1;iRNA_m5C:1 1968 chr9 134382806 134382806 1 + C T UCEC 134382806 + 134382786 134382826 41 GCGCCTGCTGCCAGCACTCGCGGGGGCCTTGTCGGTCCCCA GCGCCTGCTGCCAGCACTCGTGGGGGCCTTGTCGGTCCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control POMT1 ENSG00000130714 CDS Human protein_coding chr9:134382806 chr9:134382806 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_1968 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1968 DeepMRMD:1;iRNA_m5C:1 1969 chr5 176710791 176710791 1 + C T UCEC 176710791 + 176710771 176710811 41 TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTCCC TTCTTTTGGAATTCTAGGACTGAATCATTGATGCTGGTCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176710791 chr5:176710791 stopgain 0.996 1 21 hm5C_associated_SNPs_1969 2 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1969 DeepMRMD:1;iRNA_m5C:1 Sotos syndrome 1 Sotos syndrome 1 1970 chr10 81036966 81036966 1 + C T UCEC 81036966 + 81036946 81036986 41 TCCTCCTGGTGCGAAGAGCTCGGCCGCCTGCTGCTGCTCCG TCCTCCTGGTGCGAAGAGCTTGGCCGCCTGCTGCTGCTCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:81036966 chr10:81036966 synonymous SNV . 0 21 hm5C_associated_SNPs_1970 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1970 DeepMRMD:1;iRNA_m5C:1 1971 chr7 5338900 5338900 1 + C T UCEC 5338900 + 5338880 5338920 41 TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCCGACATG TGCACCGCTACGTGGTGGCGTGGGTGATCTGGGCCGACATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338900 chr7:5338900 nonsynonymous SNV 0.821 2 21 hm5C_associated_SNPs_1971 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1971 DeepMRMD:1;iRNA_m5C:1 1972 chr12 52314578 52314578 1 + C T UCEC 52314578 + 52314558 52314598 41 GCTCAGATGATGCGGGAGTGCTGGTACCCAAACCCCTCTGC GCTCAGATGATGCGGGAGTGTTGGTACCCAAACCCCTCTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52314578 chr12:52314578 synonymous SNV . 0 21 hm5C_associated_SNPs_1972 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_1972 DeepMRMD:1;iRNA_m5C:1 1973 chr5 68425373 68425373 1 + C T UCEC 68425373 + 68425353 68425393 41 CTGGCCTAAGTACTGGATTTCATGATGTTCTGGCTATGACA CTGGCCTAAGTACTGGATTTTATGATGTTCTGGCTATGACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68425373 chr5:68425373 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_1973 0 0 1 1 1 Ribosome 1 0 1 1 hm5C_site_1973 DeepMRMD:1;iRNA_m5C:1 1974 chr10 60145389 60145389 1 + C T UCEC 60145389 + 60145369 60145409 41 TGTGCACCGGCTGTGGAAGTCGACTGCGCTCCCCCTTCAGG TGTGCACCGGCTGTGGAAGTTGACTGCGCTCCCCCTTCAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TFAM ENSG00000108064 CDS Human protein_coding chr10:60145389 chr10:60145389 stopgain 0.008 0 21 hm5C_associated_SNPs_1974 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1974 DeepMRMD:1;iRNA_m5C:1 1975 chr11 67782828 67782828 1 + C T UCEC 67782828 + 67782808 67782848 41 CCTTCCACGCGGGGCGCACGCGGCCAGCTGAGTTCCGGGCT CCTTCCACGCGGGGCGCACGTGGCCAGCTGAGTTCCGGGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67782828 chr11:67782828 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_1975 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_1975 DeepMRMD:1;iRNA_m5C:1 1976 chr1 112999446 112999446 1 + C T UCEC 112999446 + 112999426 112999466 41 TTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTA TTGGGGTCATCAGCTAGCAGTCCTGGCTACCAGTCATCGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999446 chr1:112999446 synonymous SNV . 0 21 hm5C_associated_SNPs_1976 0 0 0 0 0 Ribosome 1 0 1 1 hm5C_site_1976 DeepMRMD:1;iRNA_m5C:1 1977 chr17 7402808 7402808 1 + C T UCEC 7402808 + 7402788 7402828 41 AGAGAGACGTCTTCCTGGAGCGGGTGTGTGGTCCAAATGGA AGAGAGACGTCTTCCTGGAGTGGGTGTGTGGTCCAAATGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7402808 chr17:7402808 nonsynonymous SNV 0.982 3 21 hm5C_associated_SNPs_1977 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_1977 DeepMRMD:1;iRNA_m5C:1 1978 chr4 183609440 183609440 1 + C T UCEC 183609440 + 183609420 183609460 41 CACCCCCGCTGTGCCGAGCACGGGACCTGCAAGGATGGCAA CACCCCCGCTGTGCCGAGCATGGGACCTGCAAGGATGGCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183609440 chr4:183609440 synonymous SNV . 0 21 hm5C_associated_SNPs_1978 0 0 0 0 1 nucleus 1 0 1 1 hm5C_site_1978 DeepMRMD:1;iRNA_m5C:1 1979 chr14 29236650 29236650 1 + C T UCEC 29236650 + 29236630 29236670 41 CACCACCACCACCACCATCACCACCACCCGCCGCCGCCCGC CACCACCACCACCACCATCATCACCACCCGCCGCCGCCCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXG1 ENSG00000176165 CDS Human protein_coding chr14:29236650 chr14:29236650 synonymous SNV . 0 21 hm5C_associated_SNPs_1979 1 0 0 0 0 Cytosol 1 0 1 1 hm5C_site_1979 DeepMRMD:1;iRNA_m5C:1 not specified not specified 1980 chr1 109801322 109801322 1 + C T UCEC 109801322 + 109801302 109801342 41 GTGGGCCAGCCGCCAGGGCCCGGGGGCGGGCCGCCCTTCCT GTGGGCCAGCCGCCAGGGCCTGGGGGCGGGCCGCCCTTCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801322 chr1:109801322 synonymous SNV . 0 21 hm5C_associated_SNPs_1980 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1980 DeepMRMD:1;iRNA_m5C:1 1981 chr4 1729555 1729555 1 + C T UCEC 1729555 + 1729535 1729575 41 TTTGGGAGTGGCAGCTCCAGCGAGTCTGGCCCAGGTGCCCT TTTGGGAGTGGCAGCTCCAGTGAGTCTGGCCCAGGTGCCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1729555 chr4:1729555 synonymous SNV . 0 21 hm5C_associated_SNPs_1981 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_1981 DeepMRMD:1;iRNA_m5C:1 1982 chr1 180145092 180145092 1 + C T UCEC 180145092 + 180145072 180145112 41 GTGCTGACGTGCAGACACTGCGGGAGAGGCTCATTGACGCC GTGCTGACGTGCAGACACTGTGGGAGAGGCTCATTGACGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180145092 chr1:180145092 nonsynonymous SNV 0.715 4 21 hm5C_associated_SNPs_1982 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_1982 DeepMRMD:1;iRNA_m5C:1 1983 chr2 118579441 118579441 1 + C T UCEC 118579441 + 118579421 118579461 41 CCATATATCATTTTTAGGAACAGGAGTCCTTATTCTCTCAC CCATATATCATTTTTAGGAATAGGAGTCCTTATTCTCTCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579441 chr2:118579441 nonsynonymous SNV 0.973 2 21 hm5C_associated_SNPs_1983 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_1983 DeepMRMD:1;iRNA_m5C:1 1984 chr2 75104440 75104440 1 + C T UCEC 75104440 + 75104420 75104460 41 GAGACCAAAGACATCTCAGACATTGAAGGGTGAGCTTCTGG GAGACCAAAGACATCTCAGATATTGAAGGGTGAGCTTCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HK2 ENSG00000159399 CDS Human protein_coding chr2:75104440 chr2:75104440 synonymous SNV . 0 21 hm5C_associated_SNPs_1984 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1984 DeepMRMD:1;iRNA_m5C:1 1985 chr1 109643194 109643194 1 + C A UCEC 109643194 + 109643174 109643214 41 ATCAGATAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTA ATCAGATAGACGAGGCCGGGATTGTCCCCGGCCACTGATTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643194 chr1:109643194 . . 0 21 hm5C_associated_SNPs_1985 0 0 1 1 0 unknown 1 0 1 1 hm5C_site_1985 DeepMRMD:1;iRNA_m5C:1 1986 chr19 45649031 45649031 1 + C T UCEC 45649031 + 45649011 45649051 41 ACAAGGTGTTTGTGGTGACCCGGGTGGAGAGCCCGCCCGAG ACAAGGTGTTTGTGGTGACCTGGGTGGAGAGCCCGCCCGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control PPP1R37 ENSG00000104866 CDS Human protein_coding chr19:45649031 chr19:45649031 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_1986 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_1986 DeepMRMD:1;iRNA_m5C:1 1987 chr12 57919787 57919787 1 + C T UCEC 57919787 + 57919767 57919807 41 GCACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCA GCACTTTACAGGGCCGAAGGTCCCGTGCCCAGGCACCCTCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919787 chr12:57919787 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_1987 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_1987 DeepMRMD:1;iRNA_m5C:1 1988 chr2 220505284 220505284 1 + C T UCEC 220505284 + 220505264 220505304 41 TTTGTTGCTCATCCTCATGCCGGCAAAACACCATCCTGAGC TTTGTTGCTCATCCTCATGCTGGCAAAACACCATCCTGAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505284 chr2:220505284 nonsynonymous SNV 0.984 5 21 hm5C_associated_SNPs_1988 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1988 DeepMRMD:1;iRNA_m5C:1 1989 chr2 234354284 234354284 1 + C A UCEC 234354284 + 234354264 234354304 41 CTTAGTGTCAGCTGGGAGTGCTGCCGCTCGGCACAGGGAAC CTTAGTGTCAGCTGGGAGTGATGCCGCTCGGCACAGGGAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKD ENSG00000077044 CDS Human protein_coding chr2:234354284 chr2:234354284 nonsynonymous SNV 0.843 3 21 hm5C_associated_SNPs_1989 0 0 1 0 0 Nucleus 1 0 1 1 hm5C_site_1989 DeepMRMD:1;iRNA_m5C:1 1990 chr1 22332246 22332246 1 + C A UCEC 22332246 + 22332226 22332266 41 TCCCCATCAACTCTGAGGAGCTGTTTGTGCATCCACTCTGG TCCCCATCAACTCTGAGGAGATGTTTGTGCATCCACTCTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332246 chr1:22332246 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_1990 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_1990 DeepMRMD:1;iRNA_m5C:1 1991 chr21 45107407 45107407 1 + C A UCEC 45107407 + 45107387 45107427 41 GTCTTTTTAGGAAGCAGAGTCTTTTGTGTAGAGGAAGAGGA GTCTTTTTAGGAAGCAGAGTATTTTGTGTAGAGGAAGAGGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1B ENSG00000160208 CDS Human protein_coding chr21:45107407 chr21:45107407 synonymous SNV . 0 21 hm5C_associated_SNPs_1991 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_1991 DeepMRMD:1;iRNA_m5C:1 1992 chr20 3888598 3888598 1 + C T UCEC 3888598 + 3888578 3888618 41 CCATGGTTTGGACTGGATATCGGTGGAACTCTGGTCAAGCT CCATGGTTTGGACTGGATATTGGTGGAACTCTGGTCAAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PANK2 ENSG00000125779 CDS Human protein_coding chr20:3888598 chr20:3888598 synonymous SNV . 0 21 hm5C_associated_SNPs_1992 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_1992 DeepMRMD:1;iRNA_m5C:1 1993 chr11 93530714 93530714 1 + C T UCEC 93530714 + 93530694 93530734 41 TTGTTAGTTTCATAAACAGACCTTGAGTTCCATCATGATGC TTGTTAGTTTCATAAACAGATCTTGAGTTCCATCATGATGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED17 ENSG00000042429 CDS Human protein_coding chr11:93530714 chr11:93530714 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_1993 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1993 DeepMRMD:1;iRNA_m5C:1 1994 chr17 73750868 73750868 1 + C T UCEC 73750868 + 73750848 73750888 41 ACCACACTGCCCAGGGACTACTCCACCCTCACCTCCGTCTC ACCACACTGCCCAGGGACTATTCCACCCTCACCTCCGTCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73750868 chr17:73750868 synonymous SNV . 0 21 hm5C_associated_SNPs_1994 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_1994 DeepMRMD:1;iRNA_m5C:1 1995 chr6 72892697 72892697 1 + C A UCEC 72892697 + 72892677 72892717 41 GAGCTCAGACCAGTCCGAGTCGGTGCGGCCGTCCCCGCCCA GAGCTCAGACCAGTCCGAGTAGGTGCGGCCGTCCCCGCCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RIMS1 ENSG00000079841 CDS Human protein_coding chr6:72892697 chr6:72892697 stopgain 0.997 0 21 hm5C_associated_SNPs_1995 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_1995 DeepMRMD:1;iRNA_m5C:1 1996 chr11 58379202 58379202 1 + C A UCEC 58379202 + 58379182 58379222 41 AATTAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCA AATTAGAGAGGATGAGGAACATCCAAGGAAGTGAGTAGGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379202 chr11:58379202 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_1996 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_1996 DeepMRMD:1;iRNA_m5C:1 1997 chr16 70349955 70349955 1 + C T UCEC 70349955 + 70349935 70349975 41 ACCAAGTGGAAGTCCTGCAGCGGGATCCAAACTCCCCTCTG ACCAAGTGGAAGTCCTGCAGTGGGATCCAAACTCCCCTCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control DDX19B ENSG00000157349;ENSG00000260537 CDS Human other chr16:70349955 chr16:70349955 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_1997 0 0 1 0 2 chromatin 1 0 1 1 hm5C_site_1997 DeepMRMD:1;iRNA_m5C:1 1998 chr1 7845627 7845627 1 + C A UCEC 7845627 + 7845607 7845647 41 GCCCTCAACTATGCTCTCCGCTGTGTCCACAGCGTTCAAGG GCCCTCAACTATGCTCTCCGATGTGTCCACAGCGTTCAAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PER3 ENSG00000049246 CDS Human protein_coding chr1:7845627 chr1:7845627 synonymous SNV . 0 21 hm5C_associated_SNPs_1998 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_1998 DeepMRMD:1;iRNA_m5C:1 1999 chr22 24583360 24583360 1 + C T UCEC 24583360 + 24583340 24583380 41 GACGACTTCACCCTGCACAGCGGGCGCGTCCTGCCCCCAGG GACGACTTCACCCTGCACAGTGGGCGCGTCCTGCCCCCAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24583360 chr22:24583360 synonymous SNV . 0 21 hm5C_associated_SNPs_1999 0 0 0 0 1 Exosome 1 0 1 1 hm5C_site_1999 DeepMRMD:1;iRNA_m5C:1 2000 chrX 106046129 106046129 1 + C T UCEC 106046129 + 106046109 106046149 41 TTCTGAAAAATGCGCTGAAGCTGTGGCTGATGGAAAGGTCC TTCTGAAAAATGCGCTGAAGTTGTGGCTGATGGAAAGGTCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106046129 chrX:106046129 synonymous SNV . 0 21 hm5C_associated_SNPs_2000 0 0 1 0 1 exosome 1 0 1 1 hm5C_site_2000 DeepMRMD:1;iRNA_m5C:1 2001 chr10 94822661 94822661 1 + C T UCEC 94822661 + 94822641 94822681 41 GGGGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCC GGGGTTGCGGCTGGACGAGGTGCAGTGCGCCACGCTGGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822661 chr10:94822661 nonsynonymous SNV 0.467 0 21 hm5C_associated_SNPs_2001 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_2001 DeepMRMD:1;iRNA_m5C:1 2002 chr7 55466117 55466117 1 + C T UCEC 55466117 + 55466097 55466137 41 GGGTGGGAAATTATTCCAGGCATAGCCCTTTTGTACCTGCA GGGTGGGAAATTATTCCAGGTATAGCCCTTTTGTACCTGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55466117 chr7:55466117 synonymous SNV . 0 21 hm5C_associated_SNPs_2002 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_2002 DeepMRMD:1;iRNA_m5C:1 2003 chr13 114292034 114292034 1 + C A UCEC 114292034 + 114292014 114292054 41 TATCCGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGCG TATCCGGAAGCTTCTACAGCAGTCTGTCCTGTGGAACTGCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114292034 chr13:114292034 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_2003 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_2003 DeepMRMD:1;iRNA_m5C:1 2004 chr1 180010799 180010799 1 + C A UCEC 180010799 + 180010779 180010819 41 AACCCCTTTTATTTAAAGGTCCATGCAGAATCATTACAGCA AACCCCTTTTATTTAAAGGTACATGCAGAATCATTACAGCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP350 ENSG00000135837 CDS Human protein_coding chr1:180010799 chr1:180010799 synonymous SNV . 0 21 hm5C_associated_SNPs_2004 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_2004 DeepMRMD:1;iRNA_m5C:1 2005 chr7 130021497 130021497 1 + C T UCEC 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCGACGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021497 synonymous SNV . 0 21 hm5C_associated_SNPs_2005 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_2005 DeepMRMD:1;iRNA_m5C:1 2006 chr12 69115884 69115884 1 + C T UCEC 69115884 + 69115864 69115904 41 TCCCGTTGTTTCTTTTGAAGCTGGACGTTAGAAAAGGTTTT TCCCGTTGTTTCTTTTGAAGTTGGACGTTAGAAAAGGTTTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69115884 chr12:69115884 synonymous SNV . 0 21 hm5C_associated_SNPs_2006 0 0 0 0 2 chromatin 1 0 1 1 hm5C_site_2006 DeepMRMD:1;iRNA_m5C:1 2007 chr1 25679441 25679441 1 + C A UCEC 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTATGTGGATTATTTTTGGAGGTTATGTTGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679441 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_2007 0 0 1 1 2 Ribosome 1 0 1 1 hm5C_site_2007 DeepMRMD:1;iRNA_m5C:1 2008 chr3 124456785 124456785 1 + C T UCEC 124456785 + 124456765 124456805 41 GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGCC GCACCCAAAGAACTCAGCTTTGGTGCACGTGCAGAGCTGCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UMPS ENSG00000114491 CDS Human protein_coding chr3:124456785 chr3:124456785 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_2008 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_2008 DeepMRMD:1;iRNA_m5C:1 2009 chr11 34129866 34129866 1 + C T UCEC 34129866 + 34129846 34129886 41 TCTTTGTTGTAGTTGGGGATCGAGGAAAAGATCAGGTATGG TCTTTGTTGTAGTTGGGGATTGAGGAAAAGATCAGGTATGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129866 chr11:34129866 stopgain 0.950 1 21 hm5C_associated_SNPs_2009 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_2009 DeepMRMD:1;iRNA_m5C:1 2010 chr10 102762412 102762412 1 + C T UCEC 102762412 + 102762392 102762432 41 ATCTCAGGCCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCG ATCTCAGGCCGGCCCTGTCCTGGGGGGCCAGCTCCTCCCCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102762412 chr10:102762412 synonymous SNV . 0 21 hm5C_associated_SNPs_2010 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_2010 DeepMRMD:1;iRNA_m5C:1 2011 chr5 159344770 159344770 1 + C A UCEC 159344770 + 159344750 159344790 41 GCTGTCAAACTTTTTAAGTTCTCCAGGGAAAAGAAAGCAGC GCTGTCAAACTTTTTAAGTTATCCAGGGAAAAGAAAGCAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout ADRA1B ENSG00000170214 CDS Human protein_coding chr5:159344770 chr5:159344770 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_2011 0 0 0 0 1 exosome 1 0 1 1 hm5C_site_2011 DeepMRMD:1;iRNA_m5C:1 2012 chr17 47119679 47119679 1 + C T UCEC 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATCGAGAATTGTTGCAGGGCTGAGCAGGAAATAATGAAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119679 synonymous SNV . 0 21 hm5C_associated_SNPs_2012 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_2012 DeepMRMD:1;iRNA_m5C:1 2013 chr3 126736355 126736355 1 + C T UCEC 126736355 + 126736335 126736375 41 GCCCACCAGAGCTGGGGGAGCGGCCGGATGAGCTGGGCTTC GCCCACCAGAGCTGGGGGAGTGGCCGGATGAGCTGGGCTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126736355 chr3:126736355 nonsynonymous SNV 0.865 3 21 hm5C_associated_SNPs_2013 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_2013 DeepMRMD:1;iRNA_m5C:1 2014 chr7 77227168 77227168 1 + C A UCEC 77227168 + 77227148 77227188 41 TCTTTATTTAGGAGGATGAACAAGCAAGAACAGACTACTTC TCTTTATTTAGGAGGATGAAAAAGCAAGAACAGACTACTTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77227168 chr7:77227168 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_2014 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_2014 DeepMRMD:1;iRNA_m5C:1 2015 chr11 114272570 114272570 1 + C T UCEC 114272570 + 114272550 114272590 41 ATGGAAGGCCTATCAAAATTCAATTTAGATCAGGTAACTGC ATGGAAGGCCTATCAAAATTTAATTTAGATCAGGTAACTGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114272570 chr11:114272570 stopgain 0.999 1 21 hm5C_associated_SNPs_2015 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_2015 DeepMRMD:1;iRNA_m5C:1 2016 chr2 71780268 71780268 1 + C T UCEC 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTCGACATGATCTGCCTGCCGCTGGCCTCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780268 nonsynonymous SNV 0.992 3 21 hm5C_associated_SNPs_2016 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_2016 DeepMRMD:1;iRNA_m5C:1 2017 chr7 72397355 72397355 1 + C T UCEC 72397355 + 72397335 72397375 41 TGTAGACCAGAGCAGATAATCAGCTCAACACTGTCCTCACC TGTAGACCAGAGCAGATAATTAGCTCAACACTGTCCTCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72397355 chr7:72397355 synonymous SNV . 0 21 hm5C_associated_SNPs_2017 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_2017 DeepMRMD:1;iRNA_m5C:1 2018 chr12 132239012 132239012 1 + C T UCEC 132239012 + 132238992 132239032 41 GCCAGGAACGGCCTGAAGTTCGAGACCAGTGTTCGTGCCAA GCCAGGAACGGCCTGAAGTTTGAGACCAGTGTTCGTGCCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132239012 chr12:132239012 synonymous SNV . 0 21 hm5C_associated_SNPs_2018 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_2018 DeepMRMD:1;iRNA_m5C:1 2019 chr10 43292423 43292423 1 + C T UCEC 43292423 + 43292403 43292443 41 AAAGCAGCTCTCCCCACTTTCGATTCTGGGCATTGCACAGC AAAGCAGCTCTCCCCACTTTTGATTCTGGGCATTGCACAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292423 chr10:43292423 synonymous SNV . 0 21 hm5C_associated_SNPs_2019 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_2019 DeepMRMD:1;iRNA_m5C:1 2020 chr19 34959978 34959978 1 + C T UCEC 34959978 + 34959958 34959998 41 TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA TGACGTTCTCATAGTTGATTTAGATGAAGAAGATTCTTCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34959978 chr19:34959978 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_2020 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_2020 DeepMRMD:1;iRNA_m5C:1 2021 chr11 94800848 94800848 1 + C A UCEC 94800848 + 94800828 94800868 41 CCGATCTCGCTATAGGGGTTCTCGCTATAGCCGGTCTCCCT CCGATCTCGCTATAGGGGTTATCGCTATAGCCGGTCTCCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SRSF8 ENSG00000271885 CDS Human other chr11:94800848 chr11:94800848 unknown 0.001 0 21 hm5C_associated_SNPs_2021 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_2021 DeepMRMD:1;iRNA_m5C:1 2022 chr18 33289684 33289684 1 + C T UCEC 33289684 + 33289664 33289704 41 TTAGAGACTGCAATGGAAGTCGGTCCCAGCAGTGGCTTCTT TTAGAGACTGCAATGGAAGTTGGTCCCAGCAGTGGCTTCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT1 ENSG00000141429 CDS Human protein_coding chr18:33289684 chr18:33289684 nonsynonymous SNV 0.993 2 21 hm5C_associated_SNPs_2022 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_2022 DeepMRMD:1;iRNA_m5C:1 2023 chr1 173819569 173819569 1 + C T UCEC 173819569 + 173819549 173819589 41 TTAATCAGACTAATGGAGACCCAAGAGGAAGATGTGGTCCT TTAATCAGACTAATGGAGACTCAAGAGGAAGATGTGGTCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DARS2 ENSG00000117593 CDS Human protein_coding chr1:173819569 chr1:173819569 synonymous SNV . 0 21 hm5C_associated_SNPs_2023 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_2023 DeepMRMD:1;iRNA_m5C:1 2024 chr2 136537910 136537910 1 + C T UCEC 136537910 + 136537890 136537930 41 GACTTCAGTGAGAGTAACATCGTCAGAACCCCCAAACCCTG GACTTCAGTGAGAGTAACATTGTCAGAACCCCCAAACCCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136537910 chr2:136537910 nonsynonymous SNV 0.037 0 21 hm5C_associated_SNPs_2024 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_2024 DeepMRMD:1;iRNA_m5C:1 2025 chr19 49464798 49464798 1 + C A UCEC 49464798 + 49464778 49464818 41 CCTGTCTCCAGGACGGCCTCCTCTCCTACTTTGGGACGCCC CCTGTCTCCAGGACGGCCTCATCTCCTACTTTGGGACGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAX ENSG00000087088 CDS Human protein_coding chr19:49464798 chr19:49464798 nonsynonymous SNV 0.922 1 21 hm5C_associated_SNPs_2025 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_2025 DeepMRMD:1;iRNA_m5C:1 2026 chr16 87436562 87436562 1 + C G UCEC 87436562 + 87436542 87436582 41 CTCAATGCTAATCAGGCCTTCTTCCTGTTGGTGAACGGACA CTCAATGCTAATCAGGCCTTGTTCCTGTTGGTGAACGGACA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAP1LC3B ENSG00000140941 CDS Human protein_coding chr16:87436562 chr16:87436562 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_2026 0 0 0 0 2 Ribosome 1 0 1 1 hm5C_site_2026 DeepMRMD:1;iRNA_m5C:1 2027 chr20 61595023 61595023 1 + C T UCEC 61595023 + 61595003 61595043 41 TTCTTCGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGGGG TTCTTCGAGGAGACCTTCCCTGACGCCAAGGTGAGTCGGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61595023 chr20:61595023 synonymous SNV . 0 21 hm5C_associated_SNPs_2027 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_2027 DeepMRMD:1;iRNA_m5C:1 2028 chr17 27049885 27049885 1 + C T UCEC 27049885 + 27049865 27049905 41 GCTGTGAAGAAGCTGTATGACATTGATGTGGCCAAGGTCAA GCTGTGAAGAAGCTGTATGATATTGATGTGGCCAAGGTCAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL23A ENSG00000198242 CDS Human protein_coding chr17:27049885 chr17:27049885 synonymous SNV . 0 21 hm5C_associated_SNPs_2028 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_2028 DeepMRMD:1;iRNA_m5C:1 2029 chr3 10320677 10320677 1 + C T UCEC 10320677 + 10320657 10320697 41 CCCTCACCTTGGCTGCCTTGCGTGAGAACACCAGTCGCCTC CCCTCACCTTGGCTGCCTTGTGTGAGAACACCAGTCGCCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320677 chr3:10320677 nonsynonymous SNV 0.710 3 21 hm5C_associated_SNPs_2029 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_2029 DeepMRMD:1;iRNA_m5C:1 2030 chr11 45924592 45924592 1 + C T UCEC 45924592 + 45924572 45924612 41 CGTCTCCTCGCCCTATGAGTCGGCCATCGGAGAGGAATATG CGTCTCCTCGCCCTATGAGTTGGCCATCGGAGAGGAATATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924592 chr11:45924592 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_2030 0 0 0 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_2030 DeepMRMD:1;iRNA_m5C:1 2031 chr21 45560184 45560184 1 + C T UCEC 45560184 + 45560164 45560204 41 AGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCAC AGGTGAATAAAGAAGTGGAGTGTGTCCTGAAGGAGTTCCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560184 chr21:45560184 nonsynonymous SNV 0.028 4 21 hm5C_associated_SNPs_2031 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_2031 DeepMRMD:1;iRNA_m5C:1 2032 chr22 43558925 43558925 1 + C T UCEC 43558925 + 43558905 43558945 41 TACCTGGCCTGGCTGGCCTTCACGACCACACTCAACTACTG TACCTGGCCTGGCTGGCCTTTACGACCACACTCAACTACTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPO ENSG00000100300 CDS Human protein_coding chr22:43558925 chr22:43558925 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_2032 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_2032 DeepMRMD:1;iRNA_m5C:1 2033 chr1 40724018 40724018 1 + C A UCEC 40724018 + 40723998 40724038 41 ATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCT ATCTTCGGGGCCGTGCTGCTATTTTCCTGGACAGTGTATCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40724018 chr1:40724018 synonymous SNV . 0 21 hm5C_associated_SNPs_2033 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_2033 DeepMRMD:1;iRNA_m5C:1 2034 chr4 184205512 184205512 1 + C A UCEC 184205512 + 184205492 184205532 41 AGTGCGCTCACAGACCTTTTCTCCAGGAGAGCGGAACCAGT AGTGCGCTCACAGACCTTTTATCCAGGAGAGCGGAACCAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184205512 chr4:184205512 nonsynonymous SNV 0.555 4 21 hm5C_associated_SNPs_2034 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_2034 DeepMRMD:1;iRNA_m5C:1 2035 chr19 54942079 54942079 1 + C T UCEC 54942079 + 54942059 54942099 41 TGTGCCTCAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC TGTGCCTCAGTTCCCTTCAGTGCAGGTCGGTGGGTGGGCGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942079 chr19:54942079 nonsynonymous SNV 0.738 2 21 hm5C_associated_SNPs_2035 0 0 0 0 2 cytosol 1 0 1 1 hm5C_site_2035 DeepMRMD:1;iRNA_m5C:1 2036 chr8 124811871 124811871 1 + C T UCEC 124811871 + 124811851 124811891 41 TGTCCAAAGGTACAAGACTTCGAAAACTGCCAGATATATTT TGTCCAAAGGTACAAGACTTTGAAAACTGCCAGATATATTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124811871 chr8:124811871 stopgain 0.998 1 21 hm5C_associated_SNPs_2036 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_2036 DeepMRMD:1;iRNA_m5C:1 2037 chr6 144747498 144747498 1 + C T UCEC 144747498 + 144747478 144747518 41 AGATCCTGCTCAGCTGGGTGCGTCAGACCACCAGGCCCTAC AGATCCTGCTCAGCTGGGTGTGTCAGACCACCAGGCCCTAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144747498 chr6:144747498 nonsynonymous SNV 0.977 5 21 hm5C_associated_SNPs_2037 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_2037 DeepMRMD:1;iRNA_m5C:1 2038 chr2 27277595 27277595 1 + C T UCEC 27277595 + 27277575 27277615 41 TCACTTCCTGCCATGGGCTTCGAGAAGATCGAGAGCCCCGT TCACTTCCTGCCATGGGCTTTGAGAAGATCGAGAGCCCCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27277595 chr2:27277595 stopgain 0.999 0 21 hm5C_associated_SNPs_2038 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_2038 DeepMRMD:1;iRNA_m5C:1 2039 chr9 100773653 100773653 1 + C T UCEC 100773653 + 100773633 100773673 41 GTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT GTAGAAGGGGATGAGGACGATGATGAAGTCAGTGAGGAGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773653 chr9:100773653 synonymous SNV . 0 21 hm5C_associated_SNPs_2039 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_2039 DeepMRMD:1;iRNA_m5C:1 2040 chr1 27631567 27631567 1 + C T UCEC 27631567 + 27631547 27631587 41 AAGGAGACCACCAACCTGGTCCGTGTGCTCCAAGGGGATGA AAGGAGACCACCAACCTGGTTCGTGTGCTCCAAGGGGATGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27631567 chr1:27631567 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_2040 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_2040 DeepMRMD:1;iRNA_m5C:1 2041 chr11 10783524 10783524 1 + C A UCEC 10783524 + 10783504 10783544 41 TTAAAAATGGTGTCCAGCTTCTTTCCAGAGCCTATACTATT TTAAAAATGGTGTCCAGCTTATTTCCAGAGCCTATACTATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTR9 ENSG00000198730 CDS Human protein_coding chr11:10783524 chr11:10783524 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_2041 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_2041 DeepMRMD:1;iRNA_m5C:1 2042 chr11 65402834 65402834 1 + C T UCEC 65402834 + 65402814 65402854 41 CAACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATG CAACACGCCCTCCCTGCTGGTGCTGCGCCATGTCCTGGATG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402834 chr11:65402834 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_2042 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_2042 DeepMRMD:1;iRNA_m5C:1 2043 chr11 120099596 120099596 1 + C T UCEC 120099596 + 120099576 120099616 41 GGTGTGGACAGTTCTGTGTTCGAGGCTCTGCCCAAGGCCTC GGTGTGGACAGTTCTGTGTTTGAGGCTCTGCCCAAGGCCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099596 chr11:120099596 synonymous SNV . 0 21 hm5C_associated_SNPs_2043 0 0 1 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_2043 DeepMRMD:1;iRNA_m5C:1 2044 chr7 130021518 130021518 1 + C T UCEC 130021518 + 130021498 130021538 41 CCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT CCTGGCTCCCCCATCGACGTTCGAGTGCCCTTCCCCAGCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021518 chr7:130021518 synonymous SNV . 0 21 hm5C_associated_SNPs_2044 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_2044 DeepMRMD:1;iRNA_m5C:1 2045 chr21 34787311 34787311 1 + C T UCEC 34787311 + 34787291 34787331 41 GCACGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA GCACGAGGCCTGTTGTCTACTAAGTGCAGTTTAAATAGTAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787311 chr21:34787311 stopgain 0.341 0 21 hm5C_associated_SNPs_2045 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_2045 DeepMRMD:1;iRNA_m5C:1 2046 chr19 55899674 55899674 1 + C T UCEC 55899674 + 55899654 55899694 41 CTGTGATGGTGAAGAGGAAGCGGACCCGCCCCACCAAGAGC CTGTGATGGTGAAGAGGAAGTGGACCCGCCCCACCAAGAGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899674 chr19:55899674 nonsynonymous SNV 0.937 1 21 hm5C_associated_SNPs_2046 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_2046 DeepMRMD:1;iRNA_m5C:1 2047 chr3 40499425 40499425 1 + C A UCEC 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGCCGGGTGGCCTATGTCTCATTTGGACCTCATGCCGGAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499425 synonymous SNV . 0 21 hm5C_associated_SNPs_2047 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_2047 DeepMRMD:1;iRNA_m5C:1 2048 chr11 65348823 65348823 1 + C T UCEC 65348823 + 65348803 65348843 41 CCCTGAGGCCCCAAGGCCCCCGGAAACCTCACCAGAGATGA CCCTGAGGCCCCAAGGCCCCTGGAAACCTCACCAGAGATGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65348823 chr11:65348823 nonsynonymous SNV 0.560 0 21 hm5C_associated_SNPs_2048 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_2048 DeepMRMD:1;iRNA_m5C:1 2049 chr19 52206224 52206224 1 + C G UCEC 52206224 + 52206204 52206244 41 CTCAAATGGGCCAAGGGCCCCGGGCTTGGAAGGGCAGGTGG CTCAAATGGGCCAAGGGCCCGGGGCTTGGAAGGGCAGGTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPACA6 ENSG00000182310 ncRNA_exonic Human protein_coding chr19:52206224 chr19:52206224 . . 0 21 hm5C_associated_SNPs_2049 0 0 1 0 0 chromatin 1 0 1 1 hm5C_site_2049 DeepMRMD:1;iRNA_m5C:1 2050 chr19 45375183 45375183 1 + C A UCEC 45375183 + 45375163 45375203 41 ACGACAGTGGCCCTCTGCATCTCCAAAGAGGGCCGCCCACC ACGACAGTGGCCCTCTGCATATCCAAAGAGGGCCGCCCACC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45375183 chr19:45375183 synonymous SNV . 0 21 hm5C_associated_SNPs_2050 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_2050 DeepMRMD:1;iRNA_m5C:1 2051 chr12 102517803 102517803 1 + C A UCEC 102517803 + 102517783 102517823 41 GGCATTGCAGCTTTCTATGGCGGAGAACAACAAACAGGTTG GGCATTGCAGCTTTCTATGGAGGAGAACAACAAACAGGTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARPBP ENSG00000185480 CDS Human protein_coding chr12:102517803 chr12:102517803 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_2051 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_2051 DeepMRMD:1;iRNA_m5C:1 2052 chr9 124528993 124528993 1 + C A UCEC 124528993 + 124528973 124529013 41 TCGCCAAGGTCACCCAGAACCTGGCCAACTTTGCCAAGTGA TCGCCAAGGTCACCCAGAACATGGCCAACTTTGCCAAGTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124528993 chr9:124528993 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_2052 0 0 0 0 1 Ribosome 1 0 1 1 hm5C_site_2052 DeepMRMD:1;iRNA_m5C:1 2053 chrX 47426451 47426451 1 + C T UCEC 47426451 + 47426431 47426471 41 CAGCCCAGCCAGCGTGTCCTCGGGGAGGAAGTCCCCACATT CAGCCCAGCCAGCGTGTCCTTGGGGAGGAAGTCCCCACATT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ARAF ENSG00000078061 CDS Human protein_coding chrX:47426451 chrX:47426451 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_2053 0 0 1 2 2 Cytosol 1 0 1 1 hm5C_site_2053 DeepMRMD:1;iRNA_m5C:1 2054 chr15 69747822 69747822 1 + C T UCEC 69747822 + 69747802 69747842 41 TCCGAGGAGTCTGATGATGACATGGGCTTTGGTCTTTTTGA TCCGAGGAGTCTGATGATGATATGGGCTTTGGTCTTTTTGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747822 chr15:69747822 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_2054 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_2054 DeepMRMD:1;iRNA_m5C:1 2055 chr11 66411334 66411334 1 + C A UCEC 66411334 + 66411314 66411354 41 TCGATCCCTACGATAGACACCTGTTGCCGACCTCAGGAGCT TCGATCCCTACGATAGACACATGTTGCCGACCTCAGGAGCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66411334 chr11:66411334 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_2055 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_2055 DeepMRMD:1;iRNA_m5C:1 2056 chr1 171501758 171501758 1 + C T UCEC 171501758 + 171501738 171501778 41 AGGAAATTAGGGAAAGGGAGCGAGAAAAAGAACGGGAGCGT AGGAAATTAGGGAAAGGGAGTGAGAAAAAGAACGGGAGCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171501758 chr1:171501758 stopgain 0.921 0 21 hm5C_associated_SNPs_2056 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_2056 DeepMRMD:1;iRNA_m5C:1 2057 chr3 50220185 50220185 1 + C T UCEC 50220185 + 50220165 50220205 41 AGAGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCGGGC AGAGGCGCCGCAGAGCCCCGTGGTGTACGCCCGCATCGGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220185 chr3:50220185 nonsynonymous SNV 0.798 0 21 hm5C_associated_SNPs_2057 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_2057 DeepMRMD:1;iRNA_m5C:1 2058 chr1 145115809 145115809 1 + C T UCEC 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTACTTGAACATGTATTCCACTTATGCCAAACTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115809 . . 0 21 hm5C_associated_SNPs_2058 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_2058 DeepMRMD:1;iRNA_m5C:1 2059 chr13 111111172 111111172 1 + C T UCEC 111111172 + 111111152 111111192 41 CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAGG CGAAGCTATCAAAGGTCTTCTGGGACTGCCAGGACCCAAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111172 chr13:111111172 nonsynonymous SNV 0.040 4 21 hm5C_associated_SNPs_2059 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_2059 DeepMRMD:1;iRNA_m5C:1 2060 chr16 70589097 70589097 1 + C T UCEC 70589097 + 70589077 70589117 41 GGAGGAGAGCTGGTCTATTTCGAGATGGATCCTGTATGTTA GGAGGAGAGCTGGTCTATTTTGAGATGGATCCTGTATGTTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589097 chr16:70589097 synonymous SNV . 0 21 hm5C_associated_SNPs_2060 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_2060 DeepMRMD:1;iRNA_m5C:1 2061 chr5 149751759 149751759 1 + C A UCEC 149751759 + 149751739 149751779 41 AGAGAGTAGTGAGGAGGGATCTGAAAGTGAGGAGGAGGCCC AGAGAGTAGTGAGGAGGGATATGAAAGTGAGGAGGAGGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751759 chr5:149751759 nonsynonymous SNV 0.385 3 21 hm5C_associated_SNPs_2061 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_2061 DeepMRMD:1;iRNA_m5C:1 2062 chr7 150704202 150704202 1 + C T UCEC 150704202 + 150704182 150704222 41 CACCCCAGGTTCTGTGTGTTCGGGCTCGGCTCCCGGGCATA CACCCCAGGTTCTGTGTGTTTGGGCTCGGCTCCCGGGCATA Direct Loss 1 0 1 0 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704202 chr7:150704202 synonymous SNV . 0 21 hm5C_associated_SNPs_2062 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_2062 DeepMRMD:1;iRNA_m5C:1 2063 chrX 152959718 152959718 1 + C T UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCGATCTCTCCATGGTGATTGATGTGAGTGGGGTGGGGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959718 nonsynonymous SNV 0.995 3 21 hm5C_associated_SNPs_2063 0 0 1 3 1 Ribosome 1 0 1 1 hm5C_site_2063 DeepMRMD:1;iRNA_m5C:1 2064 chr16 67572572 67572572 1 + C T UCEC 67572572 + 67572552 67572592 41 TCTGAGGACAGCCTCTCCTTCAGGAGTTTCCCGGTCTTCAG TCTGAGGACAGCCTCTCCTTTAGGAGTTTCCCGGTCTTCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572572 chr16:67572572 synonymous SNV . 0 21 hm5C_associated_SNPs_2064 0 0 0 0 1 unknown 1 0 1 1 hm5C_site_2064 DeepMRMD:1;iRNA_m5C:1 2065 chr2 192141711 192141711 1 + C A UCEC 192141711 + 192141691 192141731 41 GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAGAA GAACCTCTCAATGAGGAGACATTCATCAACAACCTCAAGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141711 chr2:192141711 synonymous SNV . 0 21 hm5C_associated_SNPs_2065 0 0 1 0 2 Nucleus 1 0 1 1 hm5C_site_2065 DeepMRMD:1;iRNA_m5C:1 2066 chr22 39918059 39918059 1 + C A UCEC 39918059 + 39918039 39918079 41 TTCCCCTTTCCCCAGGGGTCCTGTCCTCCACTCCAGATCAT TTCCCCTTTCCCCAGGGGTCATGTCCTCCACTCCAGATCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ATF4 ENSG00000128272 CDS Human protein_coding chr22:39918059 chr22:39918059 nonsynonymous SNV 0.904 2 21 hm5C_associated_SNPs_2066 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_2066 DeepMRMD:1;iRNA_m5C:1 2067 chr10 14896127 14896127 1 + C A UCEC 14896127 + 14896107 14896147 41 CTATGTTTTTAATTTAGATCCTTCAAACATGATGTGAGAGG CTATGTTTTTAATTTAGATCATTCAAACATGATGTGAGAGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSPA14 ENSG00000187522 CDS Human protein_coding chr10:14896127 chr10:14896127 synonymous SNV . 0 21 hm5C_associated_SNPs_2067 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_2067 DeepMRMD:1;iRNA_m5C:1 2068 chr20 30753183 30753183 1 + C T UCEC 30753183 + 30753163 30753203 41 CTTCTGGCTGCTAACGGGTACCATCGGCTTCTATGCAGCCT CTTCTGGCTGCTAACGGGTATCATCGGCTTCTATGCAGCCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30753183 chr20:30753183 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_2068 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_2068 DeepMRMD:1;iRNA_m5C:1 2069 chr1 109643050 109643050 1 + C A UCEC 109643050 + 109643030 109643070 41 GGCCGACCCGAAATGAAAAGCTCTCCTCCTGCGAAGCCCCC GGCCGACCCGAAATGAAAAGATCTCCTCCTGCGAAGCCCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643050 chr1:109643050 . . 0 21 hm5C_associated_SNPs_2069 0 0 1 2 0 unknown 1 0 1 1 hm5C_site_2069 DeepMRMD:1;iRNA_m5C:1 2070 chr1 22331944 22331944 1 + C T UCEC 22331944 + 22331924 22331964 41 CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTG CCTCCTGGGCCACCAGGTTTTCCTGCAGTATGAGAAAAGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331944 chr1:22331944 nonsynonymous SNV 0.916 4 21 hm5C_associated_SNPs_2070 0 0 0 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_2070 DeepMRMD:1;iRNA_m5C:1 2071 chr19 34868408 34868408 1 + C T UCEC 34868408 + 34868388 34868428 41 CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGG CATCTTCGCCCCTGTGCCAGTGTGTCCGGAGCGGTGACTGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868408 chr19:34868408 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_2071 0 0 1 0 2 Ribosome 1 0 1 1 hm5C_site_2071 DeepMRMD:1;iRNA_m5C:1 2072 chr2 128184754 128184754 1 + C T UCEC 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTGACAGTGGCCCACTGCATGGATGAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184754 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_2072 0 0 1 0 2 nucleus 1 0 1 1 hm5C_site_2072 DeepMRMD:1;iRNA_m5C:1 2073 chr17 41177463 41177463 1 + C T UCEC 41177463 + 41177443 41177483 41 TTCGCCAAGGACGCCTATCCCGGGGTGAGGGACCTGCGTCT TTCGCCAAGGACGCCTATCCTGGGGTGAGGGACCTGCGTCT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RND2 ENSG00000108830 CDS Human protein_coding chr17:41177463 chr17:41177463 synonymous SNV . 0 21 hm5C_associated_SNPs_2073 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_2073 DeepMRMD:1;iRNA_m5C:1 2074 chr11 125513701 125513701 1 + C T UCEC 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513701 stopgain 0.996 0 21 hm5C_associated_SNPs_2074 0 0 1 3 2 Ribosome 1 0 1 1 hm5C_site_2074 DeepMRMD:1;iRNA_m5C:1 2075 chr17 60766960 60766960 1 + C T UCEC 60766960 + 60766940 60766980 41 CCTACCTCAACGGCACCTTCCGGCTGCTTCAGAAGCCGCTG CCTACCTCAACGGCACCTTCTGGCTGCTTCAGAAGCCGCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60766960 chr17:60766960 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_2075 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_2075 DeepMRMD:1;iRNA_m5C:1 2076 chr19 39013755 39013755 1 + C T UCEC 39013755 + 39013735 39013775 41 ATCTACTGGTCCAAGTCCCACGTGAGTGCCCACCCCAACCG ATCTACTGGTCCAAGTCCCATGTGAGTGCCCACCCCAACCG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RYR1 ENSG00000196218 CDS Human protein_coding chr19:39013755 chr19:39013755 synonymous SNV . 0 21 hm5C_associated_SNPs_2076 0 0 0 0 2 chromatin 1 0 1 1 hm5C_site_2076 DeepMRMD:1;iRNA_m5C:1 2077 chr15 89169857 89169857 1 + C T UCEC 89169857 + 89169837 89169877 41 TCCATTGTGAGCTACCATGGCAATGTCCTCTATGACAAGTA TCCATTGTGAGCTACCATGGTAATGTCCTCTATGACAAGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AEN ENSG00000181026 CDS Human protein_coding chr15:89169857 chr15:89169857 synonymous SNV . 0 21 hm5C_associated_SNPs_2077 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_2077 DeepMRMD:1;iRNA_m5C:1 2078 chr1 39853302 39853302 1 + C T UCEC 39853302 + 39853282 39853322 41 AAGCTAAGATGTCTGAGTTGCGAGTCACTCTGGATCCAGTG AAGCTAAGATGTCTGAGTTGTGAGTCACTCTGGATCCAGTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39853302 chr1:39853302 stopgain 0.930 0 21 hm5C_associated_SNPs_2078 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_2078 DeepMRMD:1;iRNA_m5C:1 2079 chr1 230384969 230384969 1 + C T UCEC 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTACATGATGCCTGAGCAGAGAAGGTCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384969 nonsynonymous SNV 0.990 3 21 hm5C_associated_SNPs_2079 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_2079 DeepMRMD:1;iRNA_m5C:1 2080 chr8 104342108 104342108 1 + C T UCEC 104342108 + 104342088 104342128 41 CAAGAAACTTTGACAGAAATCCAAACCTCACCAGAAACATC CAAGAAACTTTGACAGAAATTCAAACCTCACCAGAAACATC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104342108 chr8:104342108 synonymous SNV . 0 21 hm5C_associated_SNPs_2080 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_2080 DeepMRMD:1;iRNA_m5C:1 2081 chr7 79842035 79842035 1 + C T UCEC 79842035 + 79842015 79842055 41 ATTTTTTTCTATTACAGAACCGAATGCATGAAAGCATGAAA ATTTTTTTCTATTACAGAACTGAATGCATGAAAGCATGAAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842035 chr7:79842035 stopgain 0.998 1 21 hm5C_associated_SNPs_2081 0 0 0 0 1 Cytosol 1 0 1 1 hm5C_site_2081 DeepMRMD:1;iRNA_m5C:1 2082 chr6 168265414 168265414 1 + C T UCEC 168265414 + 168265394 168265434 41 AGTATTCACTCTATGAAGTGCATGTCAGCGGAGGTCAGTGT AGTATTCACTCTATGAAGTGTATGTCAGCGGAGGTCAGTGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168265414 chr6:168265414 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_2082 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_2082 DeepMRMD:1;iRNA_m5C:1 2083 chr17 4859438 4859438 1 + C T UCEC 4859438 + 4859418 4859458 41 GGTGACCGAATCGATCCAGGCGTGAGTGCCTCCTGACCCTG GGTGACCGAATCGATCCAGGTGTGAGTGCCTCCTGACCCTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859438 chr17:4859438 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_2083 0 0 1 0 2 nucleus 1 0 1 1 hm5C_site_2083 DeepMRMD:1;iRNA_m5C:1 2084 chr2 54872430 54872430 1 + C T UCEC 54872430 + 54872410 54872450 41 GCTCCAAAGCCAAGCCCAGGCCCTGAGTCAGGAAGGGAAGA GCTCCAAAGCCAAGCCCAGGTCCTGAGTCAGGAAGGGAAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872430 chr2:54872430 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_2084 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_2084 DeepMRMD:1;iRNA_m5C:1 2085 chr21 47805872 47805872 1 + C T UCEC 47805872 + 47805852 47805892 41 CTCCTCTCCATGCTCAAGGCCGACGTCAACCTGTCCCACAG CTCCTCTCCATGCTCAAGGCTGACGTCAACCTGTCCCACAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47805872 chr21:47805872 synonymous SNV . 0 21 hm5C_associated_SNPs_2085 0 0 0 0 1 Exosome 1 0 1 1 hm5C_site_2085 DeepMRMD:1;iRNA_m5C:1 2086 chr17 49247315 49247315 1 + C T UCEC 49247315 + 49247295 49247335 41 GAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCGAGT GAGGTCTGGGAGGGGCTGAATGTGGTGAAGACAGGCCGAGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247315 chr17:49247315 synonymous SNV . 0 21 hm5C_associated_SNPs_2086 0 0 1 0 2 unknown 1 0 1 1 hm5C_site_2086 DeepMRMD:1;iRNA_m5C:1 2087 chr11 63606987 63606987 1 + C T UCEC 63606987 + 63606967 63607007 41 GATACCGGCGCCATGTCCAGCGCTCGGACCCCCCTACCCAC GATACCGGCGCCATGTCCAGTGCTCGGACCCCCCTACCCAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK2 ENSG00000072518 CDS Human protein_coding chr11:63606987 chr11:63606987 synonymous SNV . 0 21 hm5C_associated_SNPs_2087 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_2087 DeepMRMD:1;iRNA_m5C:1 2088 chr1 164790815 164790815 1 + C T UCEC 164790815 + 164790795 164790835 41 ATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG ATCAGCCAGACAGGAGGATATAGTGATGGACTCGCAGCCAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790815 chr1:164790815 stopgain 1.000 0 21 hm5C_associated_SNPs_2088 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_2088 DeepMRMD:1;iRNA_m5C:1 2089 chr11 44129604 44129604 1 + C T UCEC 44129604 + 44129584 44129624 41 ATCTATGCTCTGAAAAAGTACGTGGATGACTTTGGCGTCTC ATCTATGCTCTGAAAAAGTATGTGGATGACTTTGGCGTCTC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129604 chr11:44129604 synonymous SNV . 0 21 hm5C_associated_SNPs_2089 0 0 1 0 0 Endoplasmic reticulum 1 0 1 1 hm5C_site_2089 DeepMRMD:1;iRNA_m5C:1 2090 chr6 151672255 151672255 1 + C A UCEC 151672255 + 151672235 151672275 41 TACCATTATTGAAGAAAGGTCTCCTTCTTGGATATCTGCTT TACCATTATTGAAGAAAGGTATCCTTCTTGGATATCTGCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151672255 chr6:151672255 nonsynonymous SNV 0.699 3 21 hm5C_associated_SNPs_2090 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_2090 DeepMRMD:1;iRNA_m5C:1 2091 chr19 50001175 50001175 1 + C T UCEC 50001175 + 50001155 50001195 41 GATCGGCCCCCGCTCCTAGGCGTGGTGACCAAGATGAAGAT GATCGGCCCCCGCTCCTAGGTGTGGTGACCAAGATGAAGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS11 ENSG00000142534 CDS Human protein_coding chr19:50001175 chr19:50001175 nonsynonymous SNV 0.506 0 21 hm5C_associated_SNPs_2091 0 0 1 0 1 chromatin 1 0 1 1 hm5C_site_2091 DeepMRMD:1;iRNA_m5C:1 2092 chr2 200824514 200824514 1 + C A UCEC 200824514 + 200824494 200824534 41 AGAAAAGGTTACTTCACTACCTGACAACCATAAAAATGCCC AGAAAAGGTTACTTCACTACATGACAACCATAAAAATGCCC Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824514 chr2:200824514 nonsynonymous SNV 0.993 2 21 hm5C_associated_SNPs_2092 0 0 1 0 2 unknown 1 0 1 1 hm5C_site_2092 DeepMRMD:1;iRNA_m5C:1 2093 chr7 6057450 6057450 1 + C T UCEC 6057450 + 6057430 6057470 41 TTGGTCTTTCCCCAGGATTACGGGGCGCTGAAAGACATCGT TTGGTCTTTCCCCAGGATTATGGGGCGCTGAAAGACATCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6057450 chr7:6057450 synonymous SNV . 0 21 hm5C_associated_SNPs_2093 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_2093 DeepMRMD:1;iRNA_m5C:1 2094 chr11 5624638 5624638 1 + C T UCEC 5624638 + 5624618 5624658 41 CTGAGCATAGACTGTGGCCACAGCTTCTGCCAAGCCTGCAT CTGAGCATAGACTGTGGCCATAGCTTCTGCCAAGCCTGCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5624638 chr11:5624638 synonymous SNV . 0 21 hm5C_associated_SNPs_2094 0 0 1 0 0 unknown 1 0 1 1 hm5C_site_2094 DeepMRMD:1;iRNA_m5C:1 2095 chr17 38320059 38320059 1 + C A UCEC 38320059 + 38320039 38320079 41 CAGAAGCAGATGCTCCAGTGCTTGGCAGTCCTGAGAAGGAA CAGAAGCAGATGCTCCAGTGATTGGCAGTCCTGAGAAGGAA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320059 chr17:38320059 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_2095 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_2095 DeepMRMD:1;iRNA_m5C:1 2096 chr19 1041933 1041933 1 + C T UCEC 1041933 + 1041913 1041953 41 TTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAG TTTCCGCAGCTGACACCGGGTGAGGAGCCCGGGCGCCTGAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041933 chr19:1041933 synonymous SNV . 0 21 hm5C_associated_SNPs_2096 0 0 0 0 1 Endoplasmic reticulum 1 0 1 1 hm5C_site_2096 DeepMRMD:1;iRNA_m5C:1 2097 chr5 140741124 140741124 1 + C A UCEC 140741124 + 140741104 140741144 41 GGCGCCTCTATCGCTCAAATCAGTGCCTCTGACCCTGACTT GGCGCCTCTATCGCTCAAATAAGTGCCTCTGACCCTGACTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741124 chr5:140741124 synonymous SNV . 0 21 hm5C_associated_SNPs_2097 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_2097 DeepMRMD:1;iRNA_m5C:1 2098 chr4 71555124 71555124 1 + C T UCEC 71555124 + 71555104 71555144 41 TGACAGAGGTTAAGGATGAGCTGGAGCCATTGTTAGAGTTG TGACAGAGGTTAAGGATGAGTTGGAGCCATTGTTAGAGTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UTP3 ENSG00000132467 CDS Human protein_coding chr4:71555124 chr4:71555124 synonymous SNV . 0 21 hm5C_associated_SNPs_2098 0 0 1 0 0 Cytosol 1 0 1 1 hm5C_site_2098 DeepMRMD:1;iRNA_m5C:1 2099 chr3 119133695 119133695 1 + C A UCEC 119133695 + 119133675 119133715 41 CTCGAGGTTCCCTCCTCCAGCAGCTGTGCTAATCTTGAAAC CTCGAGGTTCCCTCCTCCAGAAGCTGTGCTAATCTTGAAAC Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119133695 chr3:119133695 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_2099 0 0 0 0 0 cytosol 1 0 1 1 hm5C_site_2099 DeepMRMD:1;iRNA_m5C:1 2100 chrX 41089043 41089043 1 + C T UCEC 41089043 + 41089023 41089063 41 TCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG TCCAGAGGAGGTAAAAAAAGTCACCAGTGTGCAGCAGATAG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089043 chrX:41089043 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_2100 0 0 0 0 1 Nucleus 1 0 1 1 hm5C_site_2100 DeepMRMD:1;iRNA_m5C:1 2101 chr5 134099691 134099691 1 + C T UCEC 134099691 + 134099671 134099711 41 GTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGATAGA GTAAACGTGGAGATGACAGATGGTCTAGAAGTAGAGATAGA Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099691 chr5:134099691 nonsynonymous SNV 0.990 4 21 hm5C_associated_SNPs_2101 0 0 1 0 2 Cytosol 1 0 1 1 hm5C_site_2101 DeepMRMD:1;iRNA_m5C:1 2102 chrX 73044555 73044555 1 + G A UCS 73044555 - 73044535 73044575 41 GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAAT GTGAGATCCAGACCGAAAGTTACTTAATTCAGCTTGCGAAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044555 chrX:73044555 . . 0 21 hm5C_associated_SNPs_2102 0 0 1 2 0 unknown 1 0 1 1 hm5C_site_2102 DeepMRMD:1;iRNA_m5C:1 2103 chr19 1453536 1453536 1 + C T UCS 1453536 + 1453516 1453556 41 GGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTT GGCAGCCCAGTACACGGCTCTGGGCCCTCCAAGGACAGCTT Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453536 chr19:1453536 synonymous SNV . 0 21 hm5C_associated_SNPs_2103 0 0 0 0 1 nucleolus 1 0 1 1 hm5C_site_2103 DeepMRMD:1;iRNA_m5C:1 2104 chr1 198231762 198231762 1 + C A UCS 198231762 + 198231742 198231782 41 GCATCAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG GCATCAAAGAAATAGATCTTATTAAGGTAATTAATGAACTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231762 chr1:198231762 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_2104 0 0 0 0 2 Nucleus 1 0 1 1 hm5C_site_2104 DeepMRMD:1;iRNA_m5C:1 2105 chr7 2395011 2395011 1 + C G UCS 2395011 + 2394991 2395031 41 CGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACT CGGCGACGCGGACGAGCCCTGCTTCAGCGACCCCGAGGACT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395011 chr7:2395011 nonsynonymous SNV 0.982 3 21 hm5C_associated_SNPs_2105 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_2105 DeepMRMD:1;iRNA_m5C:1 2106 chr3 127335929 127335929 1 + C T UCS 127335929 + 127335909 127335949 41 GGGCCCTGGTTCTGGCTGACCGAGGAGTGTGTCTCATTGAT GGGCCCTGGTTCTGGCTGACTGAGGAGTGTGTCTCATTGAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127335929 chr3:127335929 stopgain 0.942 1 21 hm5C_associated_SNPs_2106 0 0 1 0 1 Cytosol 1 0 1 1 hm5C_site_2106 DeepMRMD:1;iRNA_m5C:1 2107 chr2 105472295 105472295 1 + C T UVM 105472295 + 105472275 105472315 41 CACGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCCGCCGT CACGCCGCCGCCGCCGCCGCTGCTGCCGCCGCCGCCGCCGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472295 chr2:105472295 synonymous SNV . 0 21 hm5C_associated_SNPs_2107 0 0 0 0 0 exosome 1 0 1 1 hm5C_site_2107 DeepMRMD:1;iRNA_m5C:1 2108 chr5 54641006 54641006 1 + C T LAML 54641006 + 54640986 54641026 41 CCAAAGGAGACCAGAAAGGGCGGAAAGGAGGAACAAAAGGT CCAAAGGAGACCAGAAAGGGTGGAAAGGAGGAACAAAAGGT Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54641006 chr5:54641006 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_2108 0 0 1 0 1 Nucleus 1 0 1 1 hm5C_site_2108 DeepMRMD:1;iRNA_m5C:1 2109 chr4 113298991 113298991 1 + C A LAML 113298991 + 113298971 113299011 41 AGTGCAAGCAAGTGCTGGATCAGCTCTTGTTGGAAGCGCCA AGTGCAAGCAAGTGCTGGATAAGCTCTTGTTGGAAGCGCCA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113298991 chr4:113298991 nonsynonymous SNV 0.951 0 21 hm5C_associated_SNPs_2109 0 0 0 1 1 chromatin 1 0 1 1 hm5C_site_2109 DeepMRMD:1;iRNA_m5C:1 2110 chr8 22054839 22054839 1 + C T LAML 22054839 + 22054819 22054859 41 TTCTGTGGTTCTGAGAAGCCCGAGGTCATCACCTCCCAGTA TTCTGTGGTTCTGAGAAGCCTGAGGTCATCACCTCCCAGTA Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054839 chr8:22054839 synonymous SNV . 0 21 hm5C_associated_SNPs_2110 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_2110 DeepMRMD:1;iRNA_m5C:1 2111 chr17 38320064 38320064 1 + C T LAML 38320064 + 38320044 38320084 41 GCAGATGCTCCAGTGCTTGGCAGTCCTGAGAAGGAAGAGGC GCAGATGCTCCAGTGCTTGGTAGTCCTGAGAAGGAAGAGGC Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320064 chr17:38320064 synonymous SNV . 0 21 hm5C_associated_SNPs_2111 0 0 1 0 0 Ribosome 1 0 1 1 hm5C_site_2111 DeepMRMD:1;iRNA_m5C:1 2112 chr17 46128919 46128919 1 + C T LAML 46128919 + 46128899 46128939 41 TGCGAGAAAGCGAAACGGAGCAGGGATTCGGTGAAGATTTG TGCGAGAAAGCGAAACGGAGTAGGGATTCGGTGAAGATTTG Direct Loss 1 0 1 0 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128919 chr17:46128919 stopgain 1.000 0 21 hm5C_associated_SNPs_2112 0 0 1 0 1 Ribosome 1 0 1 1 hm5C_site_2112 DeepMRMD:1;iRNA_m5C:1 2113 chr20 31374362 31374362 1 + C T LAML 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGAGAGGCACAGGCCTTCCTCACGTTCCACCCGAGGCCGG Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374362 nonsynonymous SNV 0.192 1 21 hm5C_associated_SNPs_2113 0 0 0 0 1 chromatin 1 0 1 1 hm5C_site_2113 DeepMRMD:1;iRNA_m5C:1 2114 chr4 26407834 26407834 1 + C T LAML 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGCGAGGGGATTAAACAGTACTTATTCTTCAT Direct Loss 1 0 1 0 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407834 stopgain 1.000 1 21 hm5C_associated_SNPs_2114 0 0 1 0 2 Endoplasmic reticulum 1 0 1 1 hm5C_site_2114 DeepMRMD:1;iRNA_m5C:1 2115 chr19 52954654 52954654 1 + C T CESC 52954654 + 52954634 52954674 41 GGCCGAGGCCACGGGACTCTCAGGGCCGGGCCCGCCCCTCG GGCCGAGGCCACGGGACTCTTAGGGCCGGGCCCGCCCCTCG Direct Loss 0.993645071091908 0 0.94090575 0 prediction 0.987290142183816 Functional Loss - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52954654 chr19:52954654 synonymous SNV . 0 21 hm5C_associated_SNPs_46795 0 0 0 0 0 exosome 0.500231643922393 0 0.8818115 0.000463287844785443 hm5C_site_2115 DeepMRMD:0.8818115;iRNA_m5C:0.000463287844785443 2116 chr6 112671190 112671190 1 + C T SKCM 112671190 + 112671170 112671210 41 GGGAGGAGCTCCGGCATTTTCGGGAGGATGTGACCCTGGAT GGGAGGAGCTCCGGCATTTTTGGGAGGATGTGACCCTGGAT Direct Loss 0.993252716496033 0 0.9407105 0 prediction 0.986505432992066 Functional Loss - RFPL4B ENSG00000251258 CDS Human protein_coding chr6:112671190 chr6:112671190 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_46796 0 0 0 0 0 unknown 0.50023164393798 0 0.881421 0.000463287875959839 hm5C_site_2116 DeepMRMD:0.881421;iRNA_m5C:0.000463287875959839 2117 chr14 52734663 52734663 1 + C A LUAD 52734663 + 52734643 52734683 41 CCTGGGGCTGCTGGCGCGCTCGGGGCTGGGGTGGTGCTCGC CCTGGGGCTGCTGGCGCGCTAGGGGCTGGGGTGGTGCTCGC Direct Loss 0.992941047341933 0 0.93642557 0 prediction 0.985882094683867 Functional Loss - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52734663 chr14:52734663 stopgain 0.989 1 21 hm5C_associated_SNPs_46797 0 0 0 0 0 exosome 0.500231643921091 0 0.87285114 0.00046328784218197 hm5C_site_2117 DeepMRMD:0.87285114;iRNA_m5C:0.00046328784218197 2118 chr13 77566118 77566118 1 + C G rs554937565 77566118 + 77566098 77566138 41 CCTGCGCTTGGGGCCAAGCTCTGGAGCTGACGCGCAGGGGC CCTGCGCTTGGGGCCAAGCTGTGGAGCTGACGCGCAGGGGC Direct Loss 0.992114011132524 0 0.7465449 0 prediction 0.984228022265049 Functional Loss - CLN5 ENSG00000102805 CDS Human protein_coding chr13:77566118 chr13:77566118 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_46798 0 0 0 0 0 Endoplasmic reticulum 0.500231938818318 0 0.4930898 0.000463877636636578 hm5C_site_2118 DeepMRMD:0.4930898;iRNA_m5C:0.000463877636636578 Metabolite levels 2119 chr13 114202762 114202762 1 + C T BRCA 114202762 + 114202742 114202782 41 GAAGAGCGGGCGTCATCTCTCGGGAGGTGAGTGGCTTCCCC GAAGAGCGGGCGTCATCTCTTGGGAGGTGAGTGGCTTCCCC Direct Loss 0.992066417294592 0 0.95954716 0 prediction 0.984132834589184 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114202762 chr13:114202762 nonsynonymous SNV 0.935 4 21 hm5C_associated_SNPs_46799 0 0 1 0 1 Ribosome 0.500231643921092 0 0.91909432 0.000463287842184856 hm5C_site_2119 DeepMRMD:0.91909432;iRNA_m5C:0.000463287842184856 2120 chr14 36003676 36003676 1 + C T BLCA 36003676 + 36003656 36003696 41 GGAGGCGGCCCGGGAACAGTCGGGGTCGCCATGTCGGGCGG GGAGGCGGCCCGGGAACAGTTGGGGTCGCCATGTCGGGCGG Direct Loss 0.991528914660666 0 0.93465686 0 prediction 0.983057829321331 Functional Loss - INSM2 ENSG00000168348 CDS Human protein_coding chr14:36003676 chr14:36003676 nonsynonymous SNV 0.890 0 21 hm5C_associated_SNPs_46800 0 0 0 0 0 unknown 0.500231643921092 0 0.86931372 0.000463287842184856 hm5C_site_2120 DeepMRMD:0.86931372;iRNA_m5C:0.000463287842184856 2121 chr3 147128283 147128283 1 + C T STAD 147128283 + 147128263 147128303 41 GCTGCATCGGCCGGGGGCTTCGGGGGCCCACACGGCCACAC GCTGCATCGGCCGGGGGCTTTGGGGGCCCACACGGCCACAC Direct Loss 0.991393459353042 0 0.9325503 0 prediction 0.982786918706083 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147128283 chr3:147128283 synonymous SNV . 0 21 hm5C_associated_SNPs_46801 0 0 0 0 0 exosome 0.500231643921092 0 0.8651006 0.000463287842184634 hm5C_site_2121 DeepMRMD:0.8651006;iRNA_m5C:0.000463287842184634 2122 chr9 22447180 22447180 1 + C T BLCA 22447180 + 22447160 22447200 41 CCCGGCGTTGCCGGTACCATCGGGGATGCAGGTTCCCCCAG CCCGGCGTTGCCGGTACCATTGGGGATGCAGGTTCCCCCAG Direct Loss 0.99124802457008 0 0.96056837 0 prediction 0.982496049140161 Functional Loss - DMRTA1 ENSG00000176399 CDS Human protein_coding chr9:22447180 chr9:22447180 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_46802 0 0 0 0 0 exosome 0.500231643921092 0 0.92113674 0.000463287842184634 hm5C_site_2122 DeepMRMD:0.92113674;iRNA_m5C:0.000463287842184634 2123 chr22 45826834 45826834 1 + C T GBM 45826834 + 45826814 45826854 41 ACTGGGACCGGCGGAGGATTCAGGGGGCTCGCGCCACCCTG ACTGGGACCGGCGGAGGATTTAGGGGGCTCGCGCCACCCTG Direct Loss 0.990388309504493 0 0.95217806 0 prediction 0.980776619008985 Functional Loss - RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45826834 chr22:45826834 stopgain 0.003 0 21 hm5C_associated_SNPs_46803 0 0 0 0 1 exosome 0.500231643921095 0 0.90435612 0.000463287842190852 hm5C_site_2123 DeepMRMD:0.90435612;iRNA_m5C:0.000463287842190852 2124 chr1 76262729 76262729 1 + C G LUAD 76262729 + 76262709 76262749 41 CCCGGCGGTTTCCCCGTCGTCGGGAGAAACCCGCTCACCTC CCCGGCGGTTTCCCCGTCGTGGGGAGAAACCCGCTCACCTC Direct Loss 0.990263775160639 0 0.92562765 0 prediction 0.980527550321279 Functional Loss - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76262729 chr1:76262729 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_46804 0 0 1 0 0 exosome 0.500231643615567 0 0.8512553 0.000463287231134757 hm5C_site_2124 DeepMRMD:0.8512553;iRNA_m5C:0.000463287231134757 2125 chr11 34937813 34937813 1 + G A rs2956114 34937813 - 34937793 34937833 41 CCATGTCTGGCTGTGATGCTCGGGAGGGAGACTGTTGTTCC CCATGTCTGGCTGTGATGCTTGGGAGGGAGACTGTTGTTCC Direct Loss 0.989941656927402 0 0.931221 0 prediction 0.979883313854804 Functional Loss - APIP ENSG00000149089 CDS Human protein_coding chr11:34937813 chr11:34937813 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_46805 1 0 1 0 1 Ribosome 0.500231643925732 0 0.862442 0.0004632878514641 hm5C_site_2125 DeepMRMD:0.862442;iRNA_m5C:0.0004632878514641 Pyruvate dehydrogenase complex deficiency Pyruvate dehydrogenase complex deficiency 2126 chr12 5153531 5153531 1 + C T STAD 5153531 + 5153511 5153551 41 CTTGCCTCCGCTGCCGGACCCGGGAGTGCGGCCCTTGCCTC CTTGCCTCCGCTGCCGGACCTGGGAGTGCGGCCCTTGCCTC Direct Loss 0.989844055926092 0 0.93416846 0 prediction 0.979688111852185 Functional Loss - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5153531 chr12:5153531 nonsynonymous SNV 0.113 2 21 hm5C_associated_SNPs_46806 0 0 0 0 0 exosome 0.500231643921078 0 0.86833692 0.000463287842155324 hm5C_site_2126 DeepMRMD:0.86833692;iRNA_m5C:0.000463287842155324 2127 chr2 45169356 45169356 1 + C T STAD 45169356 + 45169336 45169376 41 TAGCGGCGGCGGGAACGGTGCGGGAGGCGGCGGCGGCGCGG TAGCGGCGGCGGGAACGGTGTGGGAGGCGGCGGCGGCGCGG Direct Loss 0.989813763282765 0 0.9240831 0 prediction 0.97962752656553 Functional Loss - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45169356 chr2:45169356 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_46807 0 0 0 0 0 exosome 0.500231665806278 0 0.8481662 0.000463331612555296 hm5C_site_2127 DeepMRMD:0.8481662;iRNA_m5C:0.000463331612555296 2128 chr16 4846328 4846328 1 + C T rs185044021 4846328 + 4846308 4846348 41 CCCCGTCTGGGTGGGTGACGCGGGACTCGCCGCCCCACTCA CCCCGTCTGGGTGGGTGACGTGGGACTCGCCGCCCCACTCA Direct Loss 0.989699294294733 0 0.9538294 0 prediction 0.979398588589466 Functional Loss - SMIM22 ENSG00000267077 ncRNA_intronic Human antisense chr16:4846328 chr16:4846328 . . 0 21 hm5C_associated_SNPs_46808 0 0 0 0 0 Ribosome 0.500231643918102 0 0.9076588 0.000463287836203863 hm5C_site_2128 DeepMRMD:0.9076588;iRNA_m5C:0.000463287836203863 2129 chrX 51486806 51486806 1 + C T CESC 51486806 + 51486786 51486826 41 TCCCCGGGGTCGGCCCCGAGCGGGGATGGAGTCTCCTCTGC TCCCCGGGGTCGGCCCCGAGTGGGGATGGAGTCTCCTCTGC Direct Loss 0.989634540880758 0 0.9120835 0 prediction 0.979269081761516 Functional Loss - GSPT2 ENSG00000189369 CDS Human protein_coding chrX:51486806 chrX:51486806 synonymous SNV . 0 21 hm5C_associated_SNPs_46809 0 0 0 0 0 Cytosol 0.500231643925309 0 0.824167 0.000463287850618777 hm5C_site_2129 DeepMRMD:0.824167;iRNA_m5C:0.000463287850618777 2130 chr1 210406202 210406202 1 + C A rs539342126 210406202 + 210406182 210406222 41 GTCGCGGCGGCGGGACCTGCCGGGACCCTTGCCCGCCGCGC GTCGCGGCGGCGGGACCTGCAGGGACCCTTGCCCGCCGCGC Direct Loss 0.989615994569416 0 0.92797136 0 prediction 0.979231989138832 Functional Loss - SERTAD4-AS1 ENSG00000203706 ncRNA_exonic Human antisense chr1:210406202 chr1:210406202 . . 0 21 hm5C_associated_SNPs_46810 0 0 0 0 0 unknown 0.500231643798355 0 0.85594272 0.000463287596709661 hm5C_site_2130 DeepMRMD:0.85594272;iRNA_m5C:0.000463287596709661 2131 chr2 219232689 219232689 1 + C T rs557746936 219232689 + 219232669 219232709 41 CCGCTCGGGGGCGGCCTAAGCGGGGCCCAGGCCCGGACAGG CCGCTCGGGGGCGGCCTAAGTGGGGCCCAGGCCCGGACAGG Direct Loss 0.98951997856677 0 0.9512892 0 prediction 0.979039957133541 Functional Loss - CATIP ENSG00000158428 UTR3 Human protein_coding chr2:219232689 chr2:219232689 . . 0 21 hm5C_associated_SNPs_46811 0 0 0 0 0 exosome 0.500231643921092 0 0.9025784 0.00046328784218308 hm5C_site_2131 DeepMRMD:0.9025784;iRNA_m5C:0.00046328784218308 2132 chr7 42977090 42977090 1 + C T UCEC 42977090 + 42977070 42977110 41 AGAGACTGTGGTGCTGTACACGGGAGAGACACCGTCTGAAC AGAGACTGTGGTGCTGTACATGGGAGAGACACCGTCTGAAC Direct Loss 0.989382853953572 0 0.90061396 0 prediction 0.978765707907143 Functional Loss - MRPL32 ENSG00000106591 CDS Human protein_coding chr7:42977090 chr7:42977090 nonsynonymous SNV 0.955 1 21 hm5C_associated_SNPs_46812 0 0 1 0 0 Ribosome 0.500231637737797 0 0.80122792 0.00046327547559355 hm5C_site_2132 DeepMRMD:0.80122792;iRNA_m5C:0.00046327547559355 2133 chr15 43426123 43426123 1 + C G rs573311291 43426123 + 43426103 43426143 41 CTGCCGCGCCCCGCGCCCCCCAGGAGGCCGCACCCTGCGCC CTGCCGCGCCCCGCGCCCCCGAGGAGGCCGCACCCTGCGCC Direct Loss 0.989269045328455 0 0.9127227 0 prediction 0.978538090656911 Functional Loss - TMEM62 ENSG00000137842 CDS Human protein_coding chr15:43426123 chr15:43426123 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_46813 0 0 1 0 1 chromatin 0.500231643920994 0 0.8254454 0.000463287841987903 hm5C_site_2133 DeepMRMD:0.8254454;iRNA_m5C:0.000463287841987903 2134 chr6 1390431 1390431 1 + C A rs547098264 1390431 + 1390411 1390451 41 GGCGGCGGCGGCGCGGGCGCCGGGAGCGGGGGCGCCAAGAA GGCGGCGGCGGCGCGGGCGCAGGGAGCGGGGGCGCCAAGAA Direct Loss 0.98925224095422 0 0.9445144 0 prediction 0.978504481908441 Functional Loss - FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1390431 chr6:1390431 synonymous SNV . 0 21 hm5C_associated_SNPs_46814 0 0 0 0 0 exosome 0.500231643921092 0 0.8890288 0.000463287842184856 hm5C_site_2134 DeepMRMD:0.8890288;iRNA_m5C:0.000463287842184856 2135 chr12 48723506 48723506 1 + C A UCEC 48723506 + 48723486 48723526 41 GAGGAGGGCACGCGCGCTCCCTGGAGGACCCCAGCCGCGCC GAGGAGGGCACGCGCGCTCCATGGAGGACCCCAGCCGCGCC Direct Loss 0.989185683842897 0 0.89984703 0 prediction 0.978371367685794 Functional Loss - H1FNT ENSG00000187166 CDS Human protein_coding chr12:48723506 chr12:48723506 synonymous SNV . 0 21 hm5C_associated_SNPs_46815 0 0 0 0 0 exosome 0.500231643825634 0 0.79969406 0.000463287651267574 hm5C_site_2135 DeepMRMD:0.79969406;iRNA_m5C:0.000463287651267574 2136 chr11 1977651 1977651 1 + C A rs116624254 1977651 + 1977631 1977671 41 CCAGCTGGTTCGGGCTGTGACGGGGTGGCCAGCAGGGACGC CCAGCTGGTTCGGGCTGTGAAGGGGTGGCCAGCAGGGACGC Direct Loss 0.989107786593074 0 0.92758507 0 prediction 0.978215573186148 Functional Loss - MRPL23 ENSG00000214026 UTR3 Human protein_coding chr11:1977651 chr11:1977651 . . 0 21 hm5C_associated_SNPs_46816 0 0 1 0 0 Ribosome 0.500231643921093 0 0.85517014 0.000463287842185967 hm5C_site_2136 DeepMRMD:0.85517014;iRNA_m5C:0.000463287842185967 2137 chr11 118402921 118402921 1 + C T UCEC 118402921 + 118402901 118402941 41 CCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCC CCTGGGCTGAGCGGGCACTTTGGGAGAATGAACGCCACGCC Direct Loss 0.989065647766632 0 0.9249209 0 prediction 0.978131295533264 Functional Loss - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118402921 chr11:118402921 nonsynonymous SNV 0.052 4 21 hm5C_associated_SNPs_46817 0 0 1 0 1 Nucleus 0.500231643921092 0 0.8498418 0.000463287842184856 hm5C_site_2137 DeepMRMD:0.8498418;iRNA_m5C:0.000463287842184856 2138 chr10 112838901 112838901 1 + C T UCEC 112838901 + 112838881 112838921 41 GCTGGCGCGGGCGGCAGAACCGCGAGAAGCGCTTCACGTTC GCTGGCGCGGGCGGCAGAACTGCGAGAAGCGCTTCACGTTC Direct Loss 0.989037284149589 0 0.9161922 0 prediction 0.978074568299178 Functional Loss - ADRA2A ENSG00000150594 CDS Human protein_coding chr10:112838901 chr10:112838901 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_46818 0 0 0 0 0 exosome 0.500231643913893 0 0.8323844 0.000463287827785708 hm5C_site_2138 DeepMRMD:0.8323844;iRNA_m5C:0.000463287827785708 2139 chr8 65493498 65493498 1 + C T LUSC 65493498 + 65493478 65493518 41 TGTCCCTGGCGCCGCCGCCTCGGGAACGCCCGGCGTCCTCC TGTCCCTGGCGCCGCCGCCTTGGGAACGCCCGGCGTCCTCC Direct Loss 0.988991939307807 0 0.92984474 0 prediction 0.977983878615613 Functional Loss - BHLHE22 ENSG00000180828 CDS Human protein_coding chr8:65493498 chr8:65493498 nonsynonymous SNV 0.930 4 21 hm5C_associated_SNPs_46819 0 0 0 0 0 exosome 0.50023164434599 0 0.85968948 0.000463288691979757 hm5C_site_2139 DeepMRMD:0.85968948;iRNA_m5C:0.000463288691979757 2140 chr12 81110943 81110943 1 + C G LUSC 81110943 + 81110923 81110963 41 ATTTGGGGACGAGTTTGTGCCGCGAGTGGCTGCCTTCGGAG ATTTGGGGACGAGTTTGTGCGGCGAGTGGCTGCCTTCGGAG Direct Loss 0.988991754496539 0 0.9146632 0 prediction 0.977983508993079 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81110943 chr12:81110943 nonsynonymous SNV 0.126 2 21 hm5C_associated_SNPs_46820 0 0 0 0 0 unknown 0.500231647377725 0 0.8293264 0.000463294755450816 hm5C_site_2140 DeepMRMD:0.8293264;iRNA_m5C:0.000463294755450816 2141 chr19 8121127 8121127 1 + C T COAD 8121127 + 8121107 8121147 41 TACCGGATCCAGGAGGTGAGCGGGAGCTGCAATCTGCCTGC TACCGGATCCAGGAGGTGAGTGGGAGCTGCAATCTGCCTGC Direct Loss 0.988981490321969 0 0.92526495 0 prediction 0.977962980643939 Functional Loss - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8121127 chr19:8121127 synonymous SNV . 0 21 hm5C_associated_SNPs_46821 0 0 0 0 2 Cytosol 0.500231643885583 0 0.8505299 0.000463287771166776 hm5C_site_2141 DeepMRMD:0.8505299;iRNA_m5C:0.000463287771166776 2142 chr8 104153137 104153137 1 + C T rs3736043 104153137 + 104153117 104153157 41 CGCAGGAGGATGGGCTGCGGCGGGAGCCGGGCGGATGCCAT CGCAGGAGGATGGGCTGCGGTGGGAGCCGGGCGGATGCCAT Direct Loss 0.988604925631562 0 0.9076759 0 prediction 0.977209851263123 Functional Loss - BAALC ENSG00000164929 CDS Human protein_coding chr8:104153137 chr8:104153137 synonymous SNV . 0 21 hm5C_associated_SNPs_46822 0 0 0 0 0 exosome 0.500231643921086 0 0.8153518 0.000463287842172866 hm5C_site_2142 DeepMRMD:0.8153518;iRNA_m5C:0.000463287842172866 2143 chr19 57157105 57157105 1 + C T rs559534942 57157105 + 57157085 57157125 41 GGACCAAGACTCTGCTGCCTCGGGAGAGCCGGGCCTGGGAG GGACCAAGACTCTGCTGCCTTGGGAGAGCCGGGCCTGGGAG Direct Loss 0.988542526102923 0 0.9229962 0 prediction 0.977085052205846 Functional Loss - SMIM17 ENSG00000268182 CDS Human protein_coding chr19:57157105 chr19:57157105 nonsynonymous SNV 0.765 0 21 hm5C_associated_SNPs_46823 0 0 0 0 1 exosome 0.500231643921092 0 0.8459924 0.000463287842184856 hm5C_site_2143 DeepMRMD:0.8459924;iRNA_m5C:0.000463287842184856 2144 chr3 147128402 147128402 1 + C T STAD 147128402 + 147128382 147128422 41 GCAGATGAGGCTCGGCTTCTCGGGGGACATGTACCCGCGAC GCAGATGAGGCTCGGCTTCTTGGGGGACATGTACCCGCGAC Direct Loss 0.988445453687263 0 0.94759965 0 prediction 0.976890907374526 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147128402 chr3:147128402 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_46824 0 0 0 0 0 exosome 0.500231643921092 0 0.8951993 0.000463287842184856 hm5C_site_2144 DeepMRMD:0.8951993;iRNA_m5C:0.000463287842184856 2145 chr3 157155647 157155647 1 + C T rs112277608 157155647 + 157155627 157155667 41 GCTAGAGGAGCTGCGGCAGACGCGAGCCGACCTGCACGCGG GCTAGAGGAGCTGCGGCAGATGCGAGCCGACCTGCACGCGG Direct Loss 0.988383422978257 0 0.8362474 0 prediction 0.976766845956515 Functional Loss - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157155647 chr3:157155647 nonsynonymous SNV 0.581 1 21 hm5C_associated_SNPs_46825 0 0 1 0 1 exosome 0.500231643920592 0 0.6724948 0.000463287841184101 hm5C_site_2145 DeepMRMD:0.6724948;iRNA_m5C:0.000463287841184101 2146 chr8 128428414 128428414 1 + C T COAD 128428414 + 128428394 128428434 41 CCTGAGAGCGAAGCAGGAGTCGGGGTGGAGAGCAACTCCAA CCTGAGAGCGAAGCAGGAGTTGGGGTGGAGAGCAACTCCAA Direct Loss 0.988215204408955 0 0.95405483 0 prediction 0.976430408817909 Functional Loss - POU5F1B ENSG00000212993 CDS Human protein_coding chr8:128428414 chr8:128428414 synonymous SNV . 0 21 hm5C_associated_SNPs_46826 0 0 0 0 0 exosome 0.500231643921092 0 0.90810966 0.000463287842184856 hm5C_site_2146 DeepMRMD:0.90810966;iRNA_m5C:0.000463287842184856 2147 chr15 44829415 44829415 1 + C G TGCT 44829415 + 44829395 44829435 41 GGCGGCGGCGGCGGCGGCGGCGGGGGACTCGGACTCCTGGG GGCGGCGGCGGCGGCGGCGGGGGGGGACTCGGACTCCTGGG Direct Loss 0.988146885725435 0 0.93747044 0 prediction 0.976293771450871 Functional Loss - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44829415 chr15:44829415 nonsynonymous SNV 0.993 0 21 hm5C_associated_SNPs_46827 0 0 1 0 1 Ribosome 0.500231643921087 0 0.87494088 0.000463287842173532 hm5C_site_2147 DeepMRMD:0.87494088;iRNA_m5C:0.000463287842173532 2148 chr1 156028127 156028127 1 + C A KIRC 156028127 + 156028107 156028147 41 CCCAGGCTTTGGTGCAGTACCTGGAGGAGCCCCTCACCCAA CCCAGGCTTTGGTGCAGTACATGGAGGAGCCCCTCACCCAA Direct Loss 0.988047693352361 0 0.89530694 0 prediction 0.976095386704721 Functional Loss - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156028127 chr1:156028127 nonsynonymous SNV 0.995 3 21 hm5C_associated_SNPs_46828 0 0 1 0 1 Ribosome 0.500231643921092 0 0.79061388 0.000463287842184856 hm5C_site_2148 DeepMRMD:0.79061388;iRNA_m5C:0.000463287842184856 2149 chr16 1291188 1291188 1 + C T BRCA 1291188 + 1291168 1291208 41 CTGCAGCGAGTGGGCATCGTCGGGGGTCAGGAGGCCCCCAG CTGCAGCGAGTGGGCATCGTTGGGGGTCAGGAGGCCCCCAG Direct Loss 0.988013719210836 0 0.94843906 0 prediction 0.976027438421673 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291188 chr16:1291188 synonymous SNV . 0 21 hm5C_associated_SNPs_46829 0 0 0 0 0 exosome 0.500231643921094 0 0.89687812 0.000463287842188853 hm5C_site_2149 DeepMRMD:0.89687812;iRNA_m5C:0.000463287842188853 2150 chr14 23072431 23072431 1 + C T SKCM 23072431 + 23072411 23072451 41 TTTGGGGGCGGCGTGGGTCTCTGGATCCTCAACATGGACTC TTTGGGGGCGGCGTGGGTCTTTGGATCCTCAACATGGACTC Direct Loss 0.987966511147311 0 0.92754716 0 prediction 0.975933022294621 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23072431 chr14:23072431 synonymous SNV . 0 21 hm5C_associated_SNPs_46830 0 0 0 0 0 cytosol 0.500231643886488 0 0.85509432 0.000463287772975773 hm5C_site_2150 DeepMRMD:0.85509432;iRNA_m5C:0.000463287772975773 2151 chr22 38864307 38864307 1 + C G BLCA 38864307 + 38864287 38864327 41 ATCTTGCTGCTGGGGAAGATCTGGAGGTCCAAGTGCTGCAA ATCTTGCTGCTGGGGAAGATGTGGAGGTCCAAGTGCTGCAA Direct Loss 0.987760359730258 0 0.90357304 0 prediction 0.975520719460515 Functional Loss - KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38864307 chr22:38864307 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_46831 0 0 1 0 0 Ribosome 0.500231643803138 0 0.80714608 0.00046328760627623 hm5C_site_2151 DeepMRMD:0.80714608;iRNA_m5C:0.00046328760627623 2152 chr15 44829571 44829571 1 + C T TGCT 44829571 + 44829551 44829591 41 GTGCGGAAGGTGGGGGGCGGCGGCACTGCCGGCGGGGACCG GTGCGGAAGGTGGGGGGCGGTGGCACTGCCGGCGGGGACCG Direct Loss 0.987747830903681 0 0.89911187 0 prediction 0.975495661807363 Functional Loss - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44829571 chr15:44829571 synonymous SNV . 0 21 hm5C_associated_SNPs_46832 0 0 1 0 2 Ribosome 0.500231643921094 0 0.79822374 0.000463287842188409 hm5C_site_2152 DeepMRMD:0.79822374;iRNA_m5C:0.000463287842188409 2153 chr14 74825314 74825314 1 + C A LUSC 74825314 + 74825294 74825334 41 CTTCCAGAGAGGGGGCCCTGCAGGAGGGGGCCACAGCCCAG CTTCCAGAGAGGGGGCCCTGAAGGAGGGGGCCACAGCCCAG Direct Loss 0.987744392623741 0 0.83785576 0 prediction 0.975488785247483 Functional Loss - VRTN ENSG00000133980 CDS Human protein_coding chr14:74825314 chr14:74825314 nonsynonymous SNV 0.018 0 21 hm5C_associated_SNPs_46833 0 0 0 0 0 unknown 0.50023164392109 0 0.67571152 0.000463287842179305 hm5C_site_2153 DeepMRMD:0.67571152;iRNA_m5C:0.000463287842179305 2154 chr7 121944194 121944194 1 + G A SKCM 121944194 - 121944174 121944214 41 CCGAGCCGCGGAAGGCCAGTCTGGAGGCCCCGGCGGCGCCC CCGAGCCGCGGAAGGCCAGTTTGGAGGCCCCGGCGGCGCCC Direct Loss 0.987595674698985 0 0.83590484 0 prediction 0.97519134939797 Functional Loss - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121944194 chr7:121944194 synonymous SNV . 0 21 hm5C_associated_SNPs_46834 0 0 0 0 0 exosome 0.50023164391079 0 0.67180968 0.000463287821580449 hm5C_site_2154 DeepMRMD:0.67180968;iRNA_m5C:0.000463287821580449 2155 chr14 52735279 52735279 1 + C A LUSC 52735279 + 52735259 52735299 41 TGTGCCGAGCCGCGCGCGGACGGGAGGGAAGCGTCCCCTCA TGTGCCGAGCCGCGCGCGGAAGGGAGGGAAGCGTCCCCTCA Direct Loss 0.987512290126265 0 0.91696465 0 prediction 0.975024580252529 Functional Loss - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52735279 chr14:52735279 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_46835 0 0 0 0 1 exosome 0.500231626061431 0 0.8339293 0.000463252122861135 hm5C_site_2155 DeepMRMD:0.8339293;iRNA_m5C:0.000463252122861135 2156 chr4 174292541 174292541 1 + C A LUSC 174292541 + 174292521 174292561 41 CCGGGCAACTGTGCTGCCTGCGGGAGGATGGTGAGCGGTGC CCGGGCAACTGTGCTGCCTGAGGGAGGATGGTGAGCGGTGC Direct Loss 0.987373875528864 0 0.88206726 0 prediction 0.974747751057728 Functional Loss - SAP30 ENSG00000164105 CDS Human protein_coding chr4:174292541 chr4:174292541 synonymous SNV . 0 21 hm5C_associated_SNPs_46836 0 0 1 0 0 Cytosol 0.500231634877864 0 0.76413452 0.00046326975572808 hm5C_site_2156 DeepMRMD:0.76413452;iRNA_m5C:0.00046326975572808 2157 chr2 224822340 224822340 1 + C T LUAD 224822340 + 224822320 224822360 41 AGTTAGAGCGGCAGCGCCTTCTGCGGTGCCCGCCGCCGCCC AGTTAGAGCGGCAGCGCCTTTTGCGGTGCCCGCCGCCGCCC Direct Loss 0.987321598124226 0 0.55952376 0 prediction 0.974643196248452 Functional Loss - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224822340 chr2:224822340 synonymous SNV . 0 21 hm5C_associated_SNPs_46837 0 0 1 0 1 Ribosome 0.500231520121513 0 0.11904752 0.000463040243026347 hm5C_site_2157 DeepMRMD:0.11904752;iRNA_m5C:0.000463040243026347 2158 chr5 113698763 113698763 1 + C T DLBC 113698763 + 113698743 113698783 41 GGAGGAGGCGGCGGCGGTGGCGGGAGCGGGCACGGCAGCAG GGAGGAGGCGGCGGCGGTGGTGGGAGCGGGCACGGCAGCAG Direct Loss 0.987307703156463 0 0.91043496 0 prediction 0.974615406312927 Functional Loss - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113698763 chr5:113698763 synonymous SNV . 0 21 hm5C_associated_SNPs_46838 0 0 0 0 0 Cytosol 0.500231643921095 0 0.82086992 0.000463287842189963 hm5C_site_2158 DeepMRMD:0.82086992;iRNA_m5C:0.000463287842189963 2159 chr7 27194620 27194620 1 + C T BLCA 27194620 + 27194600 27194640 41 GGCAGAGGGCACGGCGCCCTCGGGAGCTGCGGCGGCAGTCG GGCAGAGGGCACGGCGCCCTTGGGAGCTGCGGCGGCAGTCG Direct Loss 0.987103496373646 0 0.9404119 0 prediction 0.974206992747293 Functional Loss - HOXA7 ENSG00000122592 CDS Human protein_coding chr7:27194620 chr7:27194620 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_46839 0 0 0 0 0 exosome 0.500231643921085 0 0.8808238 0.000463287842170423 hm5C_site_2159 DeepMRMD:0.8808238;iRNA_m5C:0.000463287842170423 2160 chr1 245133604 245133604 1 + C A rs560815700 245133604 + 245133584 245133624 41 GCCCAAGGGTCTTCCTCCCCCGGGATTCAGAGCGGCCCCTC GCCCAAGGGTCTTCCTCCCCAGGGATTCAGAGCGGCCCCTC Direct Loss 0.987069722113179 0 0.9290947 0 prediction 0.974139444226358 Functional Loss - LOC101928068 ENSG00000203666;ENSG00000272195 CDS Human other chr1:245133604 chr1:245133604 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_46840 0 0 0 0 0 unknown 0.500231643921092 0 0.8581894 0.000463287842184856 hm5C_site_2160 DeepMRMD:0.8581894;iRNA_m5C:0.000463287842184856 2161 chr19 34303788 34303788 1 + C T COAD 34303788 + 34303768 34303808 41 TCAGCGAGTATGTGCTTTGCCGGGAGGAGCGGCGGCCGCAG TCAGCGAGTATGTGCTTTGCTGGGAGGAGCGGCGGCCGCAG Direct Loss 0.987048044178036 0 0.90475833 0 prediction 0.974096088356072 Functional Loss - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34303788 chr19:34303788 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_46841 0 0 1 0 1 Cytosol 0.500231643921125 0 0.80951666 0.000463287842249027 hm5C_site_2161 DeepMRMD:0.80951666;iRNA_m5C:0.000463287842249027 2162 chr14 38678666 38678666 1 + C A LUAD 38678666 + 38678646 38678686 41 CCGGGCAGCTGCGGCGAAGGCGGCGGCAGCAGGGGCCCCGG CCGGGCAGCTGCGGCGAAGGAGGCGGCAGCAGGGGCCCCGG Direct Loss 0.986883129179985 0 0.91804767 0 prediction 0.973766258359969 Functional Loss - SSTR1 ENSG00000139874 CDS Human protein_coding chr14:38678666 chr14:38678666 synonymous SNV . 0 21 hm5C_associated_SNPs_46842 0 0 0 0 0 nucleus 0.500231643921092 0 0.83609534 0.000463287842184856 hm5C_site_2162 DeepMRMD:0.83609534;iRNA_m5C:0.000463287842184856 2163 chr4 16228443 16228443 1 + C T rs573491053 16228443 + 16228423 16228463 41 GGGACCCGGCAGGAGCGGGCCGGGGATGGCGGCGGCGGGCG GGGACCCGGCAGGAGCGGGCTGGGGATGGCGGCGGCGGGCG Direct Loss 0.986788077677914 0 0.9264009 0 prediction 0.973576155355828 Functional Loss - TAPT1-AS1 ENSG00000263327 ncRNA_exonic Human antisense chr4:16228443 chr4:16228443 . . 0 21 hm5C_associated_SNPs_46843 0 0 1 0 0 unknown 0.500231643921087 0 0.8528018 0.000463287842173088 hm5C_site_2163 DeepMRMD:0.8528018;iRNA_m5C:0.000463287842173088 2164 chr4 128651923 128651923 1 + C T UCEC 128651923 + 128651903 128651943 41 ACTGCCTGGTGCGGATTCCTCGCGAGCAGGGTGCGTCAAGG ACTGCCTGGTGCGGATTCCTTGCGAGCAGGGTGCGTCAAGG Direct Loss 0.98670977684479 0 0.23753557 0 prediction 0.973419553689581 Functional Loss - SLC25A31 ENSG00000151475 CDS Human protein_coding chr4:128651923 chr4:128651923 nonsynonymous SNV 0.002 3 21 hm5C_associated_SNPs_46844 0 0 0 0 0 unknown 0.500231643921151 0 0 0.00046328784230143 hm5C_site_2164 DeepMRMD:0;iRNA_m5C:0.00046328784230143 2165 chr5 1032303 1032303 1 + C T SKCM 1032303 + 1032283 1032323 41 ACCCCAAGGAGGGGCCTTTCCGGGAGGACCAGTGTCCCCTA ACCCCAAGGAGGGGCCTTTCTGGGAGGACCAGTGTCCCCTA Direct Loss 0.986603529329041 0 0.9281645 0 prediction 0.973207058658083 Functional Loss - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1032303 chr5:1032303 nonsynonymous SNV 0.162 0 21 hm5C_associated_SNPs_46845 0 0 0 0 1 exosome 0.500231643921092 0 0.856329 0.000463287842184856 hm5C_site_2165 DeepMRMD:0.856329;iRNA_m5C:0.000463287842184856 2166 chr3 196387622 196387622 1 + C A LUSC 196387622 + 196387602 196387642 41 GCCTGATGACGCTTCACATTCGGGAGCACGAGCCCCCCGGA GCCTGATGACGCTTCACATTAGGGAGCACGAGCCCCCCGGA Direct Loss 0.986243898703921 0 0.95055413 0 prediction 0.972487797407843 Functional Loss - NRROS ENSG00000174004 CDS Human protein_coding chr3:196387622 chr3:196387622 synonymous SNV . 0 21 hm5C_associated_SNPs_46846 0 0 0 0 0 chromatin 0.500231643921001 0 0.90110826 0.000463287842002336 hm5C_site_2166 DeepMRMD:0.90110826;iRNA_m5C:0.000463287842002336 2167 chr18 28991245 28991245 1 + C G LUAD 28991245 + 28991225 28991265 41 CACGGTGGAAGGAGGTGTATCGGGAGTGGAGCTCAACACAG CACGGTGGAAGGAGGTGTATGGGGAGTGGAGCTCAACACAG Direct Loss 0.986243408854958 0 0.92833924 0 prediction 0.972486817709916 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28991245 chr18:28991245 nonsynonymous SNV 0.988 3 21 hm5C_associated_SNPs_46847 0 0 0 0 1 exosome 0.500231643461522 0 0.85667848 0.000463286923044315 hm5C_site_2167 DeepMRMD:0.85667848;iRNA_m5C:0.000463286923044315 2168 chr1 155708115 155708115 1 + C G rs551652434 155708115 + 155708095 155708135 41 TGAGGAAGTCGGGCAGTACACAGGAAGAGGAGCCAGGCCCT TGAGGAAGTCGGGCAGTACAGAGGAAGAGGAGCCAGGCCCT Direct Loss 0.986215852553853 0 0.86608267 0 prediction 0.972431705107706 Functional Loss - DAP3 ENSG00000203761 ncRNA_intronic Human unprocessed_pseudogene chr1:155708115 chr1:155708115 . . 0 21 hm5C_associated_SNPs_46848 0 0 1 0 0 chromatin 0.500231643920308 0 0.73216534 0.000463287840616999 hm5C_site_2168 DeepMRMD:0.73216534;iRNA_m5C:0.000463287840616999 2169 chr6 393159 393159 1 + C G DLBC 393159 + 393139 393179 41 ACGGCACGCGGGGCATGAACCTGGAGGGCGGCGGCCGAGGC ACGGCACGCGGGGCATGAACGTGGAGGGCGGCGGCCGAGGC Direct Loss 0.986146732664153 0 0.8766281 0 prediction 0.972293465328306 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:393159 chr6:393159 nonsynonymous SNV 0.814 2 21 hm5C_associated_SNPs_46849 0 0 0 0 1 exosome 0.500142796685682 0 0.7532562 0.00028559337136369 hm5C_site_2169 DeepMRMD:0.7532562;iRNA_m5C:0.00028559337136369 2170 chr6 42989434 42989434 1 + C A rs564567932 42989434 + 42989414 42989454 41 GCCGGGGCCGGGGCCGGGGCCGGGGCCCGACGTCCCCGCGG GCCGGGGCCGGGGCCGGGGCAGGGGCCCGACGTCCCCGCGG Direct Loss 0.98614335802319 0 0.92904043 0 prediction 0.97228671604638 Functional Loss - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42989434 chr6:42989434 synonymous SNV . 0 21 hm5C_associated_SNPs_46850 0 0 1 0 1 Ribosome 0.500231643755027 0 0.85808086 0.000463287510053645 hm5C_site_2170 DeepMRMD:0.85808086;iRNA_m5C:0.000463287510053645 2171 chr2 24272645 24272645 1 + C T rs116520786 24272645 + 24272625 24272665 41 GAGGCGAGCCGGAGCGACGGCGGGGCTGGGGCCGGAGCCGA GAGGCGAGCCGGAGCGACGGTGGGGCTGGGGCCGGAGCCGA Direct Loss 0.986124624996033 0 0.8951442 0 prediction 0.972249249992065 Functional Loss - FKBP1B ENSG00000119782 UTR5 Human protein_coding chr2:24272645 chr2:24272645 . . 0 21 hm5C_associated_SNPs_46851 0 0 1 0 0 nucleoplasm 0.500231456734396 0 0.7902884 0.000462913468791237 hm5C_site_2171 DeepMRMD:0.7902884;iRNA_m5C:0.000462913468791237 2172 chrX 120181716 120181716 1 + C T UCEC 120181716 + 120181696 120181736 41 ACAGCGAGTTGGTGGCCGACCGCGAGGACGACCCCAACTTC ACAGCGAGTTGGTGGCCGACTGCGAGGACGACCCCAACTTC Direct Loss 0.98604390899862 0 0.4688815 0 prediction 0.97208781799724 Functional Loss - GLUD2 ENSG00000182890 CDS Human protein_coding chrX:120181716 chrX:120181716 nonsynonymous SNV 0.374 2 21 hm5C_associated_SNPs_46852 0 0 0 0 0 Ribosome 0.500231534101369 0 0 0.000463068202738892 hm5C_site_2172 DeepMRMD:0;iRNA_m5C:0.000463068202738892 2173 chr17 80674690 80674690 1 + C T BLCA 80674690 + 80674670 80674710 41 TGTCAGGGCCACGGGCCACTCGGGGGGCGGGTGCATCAGCC TGTCAGGGCCACGGGCCACTTGGGGGGCGGGTGCATCAGCC Direct Loss 0.985986053052232 0 0.93288743 0 prediction 0.971972106104465 Functional Loss - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80674690 chr17:80674690 nonsynonymous SNV 0.937 0 21 hm5C_associated_SNPs_46853 0 0 1 0 1 Ribosome 0.500231643921936 0 0.86577486 0.000463287843871507 hm5C_site_2173 DeepMRMD:0.86577486;iRNA_m5C:0.000463287843871507 2174 chr3 196295888 196295888 1 + C T rs576470291 196295888 + 196295868 196295908 41 GCCCCGGGGGCTGGGGCAGCCTCGGGCGGCGCTGGCTGTAG GCCCCGGGGGCTGGGGCAGCTTCGGGCGGCGCTGGCTGTAG Direct Loss 0.985872538991747 0 0.86739266 0 prediction 0.971745077983494 Functional Loss - FBXO45 ENSG00000174013 CDS Human protein_coding chr3:196295888 chr3:196295888 synonymous SNV . 0 21 hm5C_associated_SNPs_46854 0 0 1 0 0 Cytosol 0.500231643921093 0 0.73478532 0.000463287842185078 hm5C_site_2174 DeepMRMD:0.73478532;iRNA_m5C:0.000463287842185078 2175 chr1 101005307 101005307 1 + C G rs536647902 101005307 + 101005287 101005327 41 CCCCGGTGGCGCCGCGCACCCGGCGCAGGCCCAGCCCCTGC CCCCGGTGGCGCCGCGCACCGGGCGCAGGCCCAGCCCCTGC Direct Loss 0.98584316797169 0 0.86148965 0 prediction 0.971686335943379 Functional Loss - GPR88 ENSG00000181656 CDS Human protein_coding chr1:101005307 chr1:101005307 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_46855 0 0 0 0 0 exosome 0.500231643921089 0 0.7229793 0.000463287842178195 hm5C_site_2175 DeepMRMD:0.7229793;iRNA_m5C:0.000463287842178195 2176 chr3 24535932 24535932 1 + C A rs6798457 24535932 + 24535912 24535952 41 CGCCGCGCGGTGCCCGAACACGAGAGGGCACCTCCTCCCAG CGCCGCGCGGTGCCCGAACAAGAGAGGGCACCTCCTCCCAG Direct Loss 0.985813619453525 0 0.89250004 0 prediction 0.97162723890705 Functional Loss - THRB-AS1 ENSG00000228791 ncRNA_exonic Human processed_transcript chr3:24535932 chr3:24535932 . . 0 21 hm5C_associated_SNPs_46856 0 0 0 0 1 unknown 0.500231643921093 0 0.78500008 0.000463287842185078 hm5C_site_2176 DeepMRMD:0.78500008;iRNA_m5C:0.000463287842185078 2177 chr12 81111113 81111113 1 + C T UCEC 81111113 + 81111093 81111133 41 GGCGGAAGGCAGCCACTATGCGCGAGCGGAGGCGCCTGAAG GGCGGAAGGCAGCCACTATGTGCGAGCGGAGGCGCCTGAAG Direct Loss 0.985810392250075 0 0.18778458 0 prediction 0.971620784500149 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81111113 chr12:81111113 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_46857 0 0 0 0 0 unknown 0.500231643969568 0 0 0.000463287939136858 hm5C_site_2177 DeepMRMD:0;iRNA_m5C:0.000463287939136858 2178 chr17 28706011 28706011 1 + C A rs181199485 28706011 + 28705991 28706031 41 GCTGGAAGATGGCGAGCGGCCGGGACGAGCGGCCGCCTTGG GCTGGAAGATGGCGAGCGGCAGGGACGAGCGGCCGCCTTGG Direct Loss 0.985809666273004 0 0.8998376 0 prediction 0.971619332546007 Functional Loss - CPD ENSG00000108582 CDS Human protein_coding chr17:28706011 chr17:28706011 synonymous SNV . 0 21 hm5C_associated_SNPs_46858 0 0 1 0 0 Nucleus 0.500231644229349 0 0.7996752 0.000463288458698141 hm5C_site_2178 DeepMRMD:0.7996752;iRNA_m5C:0.000463288458698141 2179 chr4 157997590 157997590 1 + C G rs117062422 157997590 + 157997570 157997610 41 GAGGAGCACTGCGGCGTGCCCGGGAGGACGCGCGCTGCCCT GAGGAGCACTGCGGCGTGCCGGGGAGGACGCGCGCTGCCCT Direct Loss 0.985775538893905 0 0.9264368 0 prediction 0.971551077787809 Functional Loss - GLRB ENSG00000109738 UTR5 Human protein_coding chr4:157997590 chr4:157997590 . . 0 21 hm5C_associated_SNPs_46859 0 0 0 0 0 exosome 0.500231643921092 0 0.8528736 0.000463287842184856 hm5C_site_2179 DeepMRMD:0.8528736;iRNA_m5C:0.000463287842184856 2180 chr1 111862902 111862902 1 + C A HNSC 111862902 + 111862882 111862922 41 AGTGGCAGCGGGAACGGGAGCGGGAGTAGCAGCTCTGGAGG AGTGGCAGCGGGAACGGGAGAGGGAGTAGCAGCTCTGGAGG Direct Loss 0.985711515913912 0 0.9237833 0 prediction 0.971423031827823 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111862902 chr1:111862902 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_46860 0 0 0 0 1 exosome 0.50023164484689 0 0.8475666 0.000463289693780844 hm5C_site_2180 DeepMRMD:0.8475666;iRNA_m5C:0.000463289693780844 2181 chr18 21062398 21062398 1 + C T rs143333084 21062398 + 21062378 21062418 41 ACAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAGTG ACAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTG Direct Loss 0.985701643372385 0 0.9083924 0 prediction 0.97140328674477 Functional Loss - RIOK3 ENSG00000101782 UTR3 Human protein_coding chr18:21062398 chr18:21062398 . . 0 21 hm5C_associated_SNPs_46861 0 0 0 0 0 Ribosome 0.500231643924127 0 0.8167848 0.000463287848254001 hm5C_site_2181 DeepMRMD:0.8167848;iRNA_m5C:0.000463287848254001 2182 chr9 131038500 131038500 1 + C T SKCM 131038500 + 131038480 131038520 41 ACCGCTGTCCCCGCCCACCTCGGGAGAGGGGCGGGGCCGGC ACCGCTGTCCCCGCCCACCTTGGGAGAGGGGCGGGGCCGGC Direct Loss 0.985700680032179 0 0.9070771 0 prediction 0.971401360064358 Functional Loss - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131038500 chr9:131038500 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_46862 0 0 0 0 0 Ribosome 0.500231642250428 0 0.8141542 0.000463284500856753 hm5C_site_2182 DeepMRMD:0.8141542;iRNA_m5C:0.000463284500856753 2183 chr16 30199763 30199763 1 + C T UCEC 30199763 + 30199743 30199783 41 CTGAGGAGTGGCTGGGGGGTCGGGATGCTGGGCCCCTCCTC CTGAGGAGTGGCTGGGGGGTTGGGATGCTGGGCCCCTCCTC Direct Loss 0.985659532709563 0 0.94488597 0 prediction 0.971319065419125 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199763 chr16:30199763 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_46863 0 0 0 0 1 Cytosol 0.500231643920946 0 0.88977194 0.000463287841892424 hm5C_site_2183 DeepMRMD:0.88977194;iRNA_m5C:0.000463287841892424 2184 chr5 148206406 148206406 1 + C T PRAD 148206406 + 148206386 148206426 41 CTGCGCGCCATGGGGCAACCCGGGAACGGCAGCGCCTTCTT CTGCGCGCCATGGGGCAACCTGGGAACGGCAGCGCCTTCTT Direct Loss 0.985631610584641 0 0.9130714 0 prediction 0.971263221169282 Functional Loss - ADRB2 ENSG00000169252 CDS Human protein_coding chr5:148206406 chr5:148206406 synonymous SNV . 0 21 hm5C_associated_SNPs_46864 0 0 0 0 0 Cytoplasm 0.500231643921092 0 0.8261428 0.000463287842184856 hm5C_site_2184 DeepMRMD:0.8261428;iRNA_m5C:0.000463287842184856 2185 chr5 122181232 122181232 1 + C A rs142593222 122181232 + 122181212 122181252 41 TCGGGGCCCCGCGGGCGCAGCGGGGCGGGAGGCGGGGCGGC TCGGGGCCCCGCGGGCGCAGAGGGGCGGGAGGCGGGGCGGC Direct Loss 0.985591274959034 0 0.9255693 0 prediction 0.971182549918067 Functional Loss - SNX24 ENSG00000064652 UTR5 Human protein_coding chr5:122181232 chr5:122181232 . . 0 21 hm5C_associated_SNPs_46865 0 0 1 0 0 Cytosol 0.500231345965938 0 0.8511386 0.000462691931875314 hm5C_site_2185 DeepMRMD:0.8511386;iRNA_m5C:0.000462691931875314 2186 chr6 116600780 116600780 1 + G T CESC 116600780 - 116600760 116600800 41 CAGAGGAGGGGGGCGTACCCCAGGATGCCGCGGGCCGTGGC CAGAGGAGGGGGGCGTACCCAAGGATGCCGCGGGCCGTGGC Direct Loss 0.985581662629696 0 0.8982041 0 prediction 0.971163325259393 Functional Loss - TSPYL1 ENSG00000189241 CDS Human protein_coding chr6:116600780 chr6:116600780 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_46866 0 0 1 0 0 Ribosome 0.500231643917356 0 0.7964082 0.000463287834711279 hm5C_site_2186 DeepMRMD:0.7964082;iRNA_m5C:0.000463287834711279 2187 chrX 100807926 100807926 1 + C T COAD 100807926 + 100807906 100807946 41 GCTATACCATGGGCCGCACTCGGGAAGCTGGCTGCGTGGCC GCTATACCATGGGCCGCACTTGGGAAGCTGGCTGCGTGGCC Direct Loss 0.985528220681834 0 0.94327354 0 prediction 0.971056441363669 Functional Loss - ARMCX1 ENSG00000126947 CDS Human protein_coding chrX:100807926 chrX:100807926 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_46867 0 0 0 0 0 exosome 0.500231643921082 0 0.88654708 0.00046328784216465 hm5C_site_2187 DeepMRMD:0.88654708;iRNA_m5C:0.00046328784216465 2188 chr2 88991273 88991273 1 + C T LUSC 88991273 + 88991253 88991293 41 CGGGTCTTGGCCCCGCTGCCCGGGAGGGCCGGGGGCGCGGC CGGGTCTTGGCCCCGCTGCCTGGGAGGGCCGGGGGCGCGGC Direct Loss 0.985507840691809 0 0.92061675 0 prediction 0.971015681383618 Functional Loss - RPIA ENSG00000153574 CDS Human protein_coding chr2:88991273 chr2:88991273 synonymous SNV . 0 21 hm5C_associated_SNPs_46868 0 0 1 0 0 Cytosol 0.500231643921099 0 0.8412335 0.000463287842197069 hm5C_site_2188 DeepMRMD:0.8412335;iRNA_m5C:0.000463287842197069 2189 chr13 44453783 44453783 1 + G A rs3816311 44453783 - 44453763 44453803 41 GGTTCCCTCGTGCCAGCTGCCGGGAGGCGGGAGGGAGGTAG GGTTCCCTCGTGCCAGCTGCTGGGAGGCGGGAGGGAGGTAG Direct Loss 0.985327667563352 0 0.92530733 0 prediction 0.970655335126703 Functional Loss - CCDC122;LACC1 ENSG00000151773;ENSG00000179630 UTR5 Human other chr13:44453783 chr13:44453783 . . 0 21 hm5C_associated_SNPs_46869 0 0 0 0 1 unknown 0.500231643921092 0 0.85061466 0.000463287842184856 hm5C_site_2189 DeepMRMD:0.85061466;iRNA_m5C:0.000463287842184856 2190 chr12 69158960 69158960 1 + C T rs144195303 69158960 + 69158940 69158980 41 GCAGGAGAATCACTTGAACCCGGGAGGCGGCGGTTGCAGTG GCAGGAGAATCACTTGAACCTGGGAGGCGGCGGTTGCAGTG Direct Loss 0.98526954706468 0 0.9270221 0 prediction 0.970539094129361 Functional Loss - SLC35E3 ENSG00000175782 UTR3 Human protein_coding chr12:69158960 chr12:69158960 . . 0 21 hm5C_associated_SNPs_46870 0 0 0 0 0 nucleolus 0.500231643922164 0 0.8540442 0.000463287844328919 hm5C_site_2190 DeepMRMD:0.8540442;iRNA_m5C:0.000463287844328919 2191 chr9 32384709 32384709 1 + C T rs7854312 32384709 + 32384689 32384729 41 TGGGTCAGGTTCGCCGGTCGCGGGAGCCCCGCCGTGCAGTC TGGGTCAGGTTCGCCGGTCGTGGGAGCCCCGCCGTGCAGTC Direct Loss 0.985245666985128 0 0.9385574 0 prediction 0.970491333970256 Functional Loss - ACO1 ENSG00000122729 UTR5 Human protein_coding chr9:32384709 chr9:32384709 . . 0 21 hm5C_associated_SNPs_46871 0 0 1 0 1 Ribosome 0.500229365320196 0 0.8771148 0.000458730640391813 hm5C_site_2191 DeepMRMD:0.8771148;iRNA_m5C:0.000458730640391813 2192 chr13 28367956 28367956 1 + C T rs3742111 28367956 + 28367936 28367976 41 GGCGGGGGTGCCGGTGGTGGCGGGAGCGCACCGCAAGGCTG GGCGGGGGTGCCGGTGGTGGTGGGAGCGCACCGCAAGGCTG Direct Loss 0.985205074077961 0 0.91184413 0 prediction 0.970410148155921 Functional Loss - GSX1 ENSG00000169840 CDS Human protein_coding chr13:28367956 chr13:28367956 synonymous SNV . 0 21 hm5C_associated_SNPs_46872 0 0 0 0 0 unknown 0.500231643924172 0 0.82368826 0.000463287848344596 hm5C_site_2192 DeepMRMD:0.82368826;iRNA_m5C:0.000463287848344596 2193 chr9 34251890 34251890 1 + C T rs540835668 34251890 + 34251870 34251910 41 GAGGGGCTGGGGAGATGGGGCGGGAGGGCCAGACTCAGTGC GAGGGGCTGGGGAGATGGGGTGGGAGGGCCAGACTCAGTGC Direct Loss 0.985131074395146 0 0.9077896 0 prediction 0.970262148790291 Functional Loss - UBAP1 ENSG00000165006 UTR3 Human protein_coding chr9:34251890 chr9:34251890 . . 0 21 hm5C_associated_SNPs_46873 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8155792 0.000463287842184856 hm5C_site_2193 DeepMRMD:0.8155792;iRNA_m5C:0.000463287842184856 2194 chr8 38034611 38034611 1 + C T BLCA 38034611 + 38034591 38034631 41 AGGCGATGGCTACTATCCCTCGGGAGGCGCCTGGCCAGAGC AGGCGATGGCTACTATCCCTTGGGAGGCGCCTGGCCAGAGC Direct Loss 0.985129751668708 0 0.93192804 0 prediction 0.970259503337415 Functional Loss - BAG4 ENSG00000156735 CDS Human protein_coding chr8:38034611 chr8:38034611 nonsynonymous SNV 0.737 2 21 hm5C_associated_SNPs_46874 0 0 1 0 1 Ribosome 0.500231643962712 0 0.86385608 0.000463287925423383 hm5C_site_2194 DeepMRMD:0.86385608;iRNA_m5C:0.000463287925423383 2195 chr19 15794469 15794469 1 + C T UCEC 15794469 + 15794449 15794489 41 ACTTCACAGACGCTGTCATCCGGGAGCGGCGTCGCACCCTC ACTTCACAGACGCTGTCATCTGGGAGCGGCGTCGCACCCTC Direct Loss 0.985034312473786 0 0.8895975 0 prediction 0.970068624947571 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15794469 chr19:15794469 nonsynonymous SNV 0.226 2 21 hm5C_associated_SNPs_46875 0 0 1 0 0 exosome 0.500231665049684 0 0.779195 0.000463330099368831 hm5C_site_2195 DeepMRMD:0.779195;iRNA_m5C:0.000463330099368831 2196 chr17 74139352 74139352 1 + C G rs577279119 74139352 + 74139332 74139372 41 CGAGGAAGGACAGGGATCCTCAGGAAGGGGGTCCTGGCCAC CGAGGAAGGACAGGGATCCTGAGGAAGGGGGTCCTGGCCAC Direct Loss 0.984984264529078 0 0.8813623 0 prediction 0.969968529058156 Functional Loss - RNF157-AS1 ENSG00000267128 ncRNA_exonic Human antisense chr17:74139352 chr17:74139352 . . 0 21 hm5C_associated_SNPs_46876 0 0 0 0 2 unknown 0.500231642456831 0 0.7627246 0.000463284913661433 hm5C_site_2196 DeepMRMD:0.7627246;iRNA_m5C:0.000463284913661433 2197 chr21 45209442 45209442 1 + C G rs2276244 45209442 + 45209422 45209462 41 GGGCCAGGAGGAGGCGGGCGCAGGAGGCGCGTGCTCAGTGT GGGCCAGGAGGAGGCGGGCGGAGGAGGCGCGTGCTCAGTGT Direct Loss 0.984939030158188 0 0.94352937 0 prediction 0.969878060316376 Functional Loss - RRP1 ENSG00000160214 UTR5 Human protein_coding chr21:45209442 chr21:45209442 . . 0 21 hm5C_associated_SNPs_46877 0 0 1 0 0 Ribosome 0.500231643951591 0 0.88705874 0.000463287903182952 hm5C_site_2197 DeepMRMD:0.88705874;iRNA_m5C:0.000463287903182952 2198 chr2 187558968 187558968 1 + C A UCEC 187558968 + 187558948 187558988 41 GGCCGTGGTGCTGCTGAAAGCGCGGCTGGTCCCCGCGGCCG GGCCGTGGTGCTGCTGAAAGAGCGGCTGGTCCCCGCGGCCG Direct Loss 0.984885155701818 0 0.898875 0 prediction 0.969770311403636 Functional Loss - FAM171B ENSG00000144369 CDS Human protein_coding chr2:187558968 chr2:187558968 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_46878 0 0 1 0 0 nucleoplasm 0.500231643921092 0 0.79775 0.000463287842184856 hm5C_site_2198 DeepMRMD:0.79775;iRNA_m5C:0.000463287842184856 2199 chr11 76750707 76750707 1 + C A BLCA 76750707 + 76750687 76750727 41 TCCAGGCGCCAAGGTCCCCGCGGGAGGAGAGGTCCCCGCAG TCCAGGCGCCAAGGTCCCCGAGGGAGGAGAGGTCCCCGCAG Direct Loss 0.984878004661096 0 0.9353027 0 prediction 0.969756009322192 Functional Loss - B3GNT6 ENSG00000198488 CDS Human protein_coding chr11:76750707 chr11:76750707 synonymous SNV . 0 21 hm5C_associated_SNPs_46879 0 0 0 0 0 exosome 0.500231643921092 0 0.8706054 0.000463287842184856 hm5C_site_2199 DeepMRMD:0.8706054;iRNA_m5C:0.000463287842184856 2200 chr19 39691388 39691388 1 + C T LGG 39691388 + 39691368 39691408 41 CCTCCGTGTCTGTGCAGCTCCGGGAGTGACTGGCTGGCTCC CCTCCGTGTCTGTGCAGCTCTGGGAGTGACTGGCTGGCTCC Direct Loss 0.984844143970736 0 0.9387305 0 prediction 0.969688287941471 Functional Loss - NCCRP1 ENSG00000188505 CDS Human protein_coding chr19:39691388 chr19:39691388 nonsynonymous SNV 0.988 2 21 hm5C_associated_SNPs_46880 0 0 0 0 0 exosome 0.500231641600098 0 0.877461 0.000463283200195841 hm5C_site_2200 DeepMRMD:0.877461;iRNA_m5C:0.000463283200195841 2201 chr6 66498003 66498003 1 + C T rs114882532 66498003 + 66497983 66498023 41 CGCGCAAGGGGCCCTGTTTCCGGGGAGACTGATTTCGGCCT CGCGCAAGGGGCCCTGTTTCTGGGGAGACTGATTTCGGCCT Direct Loss 0.984828798157266 0 0.9537271 0 prediction 0.969657596314533 Functional Loss - SLC25A51P1 ENSG00000220483 upstream Human processed_pseudogene chr6:66498003 chr6:66498003 . . 0 21 hm5C_associated_SNPs_46881 0 0 0 0 0 unknown 0.500231643917081 0 0.9074542 0.000463287834161275 hm5C_site_2201 DeepMRMD:0.9074542;iRNA_m5C:0.000463287834161275 2202 chr8 65493764 65493764 1 + C T SKCM 65493764 + 65493744 65493784 41 GCGAGCCGGGGCTCGGTGGCCGAGAGCAGCGGCGGCGAGCA GCGAGCCGGGGCTCGGTGGCTGAGAGCAGCGGCGGCGAGCA Direct Loss 0.984781669300064 0 0.8983774 0 prediction 0.969563338600129 Functional Loss - BHLHE22 ENSG00000180828 CDS Human protein_coding chr8:65493764 chr8:65493764 synonymous SNV . 0 21 hm5C_associated_SNPs_46882 0 0 0 0 0 exosome 0.500231643959737 0 0.7967548 0.000463287919474586 hm5C_site_2202 DeepMRMD:0.7967548;iRNA_m5C:0.000463287919474586 2203 chr1 75602801 75602801 1 + C T rs141641179 75602801 + 75602781 75602821 41 GCAGGTGAGCCCCGAGGGAGCGGGGGACGAGGACTCGTGCT GCAGGTGAGCCCCGAGGGAGTGGGGGACGAGGACTCGTGCT Direct Loss 0.984760471148729 0 0.9448949 0 prediction 0.969520942297457 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602801 chr1:75602801 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_46883 0 0 0 0 2 exosome 0.500231643986896 0 0.8897898 0.00046328797379247 hm5C_site_2203 DeepMRMD:0.8897898;iRNA_m5C:0.00046328797379247 2204 chr10 81892284 81892284 1 + C G rs546227396 81892284 + 81892264 81892304 41 TCGGGGGGCGGCCCCTTCCTCGGGAGGCGCCCAGGTGGCAC TCGGGGGGCGGCCCCTTCCTGGGGAGGCGCCCAGGTGGCAC Direct Loss 0.98471951262788 0 0.9443151 0 prediction 0.96943902525576 Functional Loss - PLAC9 ENSG00000189129 intronic Human protein_coding chr10:81892284 chr10:81892284 . . 0 21 hm5C_associated_SNPs_46884 0 0 0 0 0 exosome 0.500231643921093 0 0.8886302 0.0004632878421853 hm5C_site_2204 DeepMRMD:0.8886302;iRNA_m5C:0.0004632878421853 2205 chr21 45563186 45563186 1 + C T UCEC 45563186 + 45563166 45563206 41 GGTGGCAAGTGGCCTTATGCCGGGACCGCAGAGGCCATCAA GGTGGCAAGTGGCCTTATGCTGGGACCGCAGAGGCCATCAA Direct Loss 0.984629374961499 0 0.9166472 0 prediction 0.969258749922999 Functional Loss - C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45563186 chr21:45563186 synonymous SNV . 0 21 hm5C_associated_SNPs_46885 0 0 1 0 1 Ribosome 0.500231643921092 0 0.8332944 0.000463287842184856 hm5C_site_2205 DeepMRMD:0.8332944;iRNA_m5C:0.000463287842184856 2206 chr2 109302699 109302699 1 + C G rs826592 109302699 + 109302679 109302719 41 GCAGGAGAATGGTGGGAACCCGGGAGGCAGAGCTTGCAGTG GCAGGAGAATGGTGGGAACCGGGGAGGCAGAGCTTGCAGTG Direct Loss 0.984552221726106 0 0.9205606 0 prediction 0.969104443452211 Functional Loss - LIMS1 ENSG00000169756 UTR3 Human protein_coding chr2:109302699 chr2:109302699 . . 0 21 hm5C_associated_SNPs_46886 0 0 0 0 0 Cytosol 0.500231643921129 0 0.8411212 0.000463287842258353 hm5C_site_2206 DeepMRMD:0.8411212;iRNA_m5C:0.000463287842258353 2207 chrX 123044642 123044642 1 + C G rs28382746 123044642 + 123044622 123044662 41 GCAGGAGAATGGTGTGAACCCGGGAGGCAGAGCTTGCAGTG GCAGGAGAATGGTGTGAACCGGGGAGGCAGAGCTTGCAGTG Direct Loss 0.984439606171767 0 0.91014737 0 prediction 0.968879212343534 Functional Loss - XIAP ENSG00000101966 UTR3 Human protein_coding chrX:123044642 chrX:123044642 . . 0 21 hm5C_associated_SNPs_46887 0 0 0 0 0 Cytosol 0.500231643919388 0 0.82029474 0.000463287838776916 hm5C_site_2207 DeepMRMD:0.82029474;iRNA_m5C:0.000463287838776916 2208 chr15 43690268 43690268 1 + C T COAD 43690268 + 43690248 43690288 41 AGGCAAGAGAAGGGCCTTCTCGGGAAACTTCTCCCCGGGAA AGGCAAGAGAAGGGCCTTCTTGGGAAACTTCTCCCCGGGAA Direct Loss 0.984404958982379 0 0.90878 0 prediction 0.968809917964759 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690268 chr15:43690268 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_46888 1 0 1 0 2 Ribosome 0.500231643921065 0 0.81756 0.000463287842129789 hm5C_site_2208 DeepMRMD:0.81756;iRNA_m5C:0.000463287842129789 not specified not specified 2209 chr14 23511762 23511762 1 + C T STAD 23511762 + 23511742 23511782 41 CCTGGTATCGGGTATTACAGCGGGAGCTGCGGCTTCGGGAA CCTGGTATCGGGTATTACAGTGGGAGCTGCGGCTTCGGGAA Direct Loss 0.984316681981122 0 0.9399924 0 prediction 0.968633363962244 Functional Loss - PSMB11 ENSG00000222028 CDS Human protein_coding chr14:23511762 chr14:23511762 nonsynonymous SNV 0.968 4 21 hm5C_associated_SNPs_46889 0 0 0 0 0 exosome 0.500231643919292 0 0.8799848 0.000463287838584181 hm5C_site_2209 DeepMRMD:0.8799848;iRNA_m5C:0.000463287838584181 2210 chr2 242122122 242122122 1 + C A PAAD 242122122 + 242122102 242122142 41 AGCTGAAGGGAGCCAGGAGCCTGGAGACAGTGTACCTGGAG AGCTGAAGGGAGCCAGGAGCATGGAGACAGTGTACCTGGAG Direct Loss 0.984300564447642 0 0.76675296 0 prediction 0.968601128895283 Functional Loss - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242122122 chr2:242122122 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_46890 0 0 0 0 1 Ribosome 0.500231643921092 0 0.53350592 0.000463287842184856 hm5C_site_2210 DeepMRMD:0.53350592;iRNA_m5C:0.000463287842184856 2211 chr1 234367230 234367230 1 + C A SKCM 234367230 + 234367210 234367250 41 CCGGCCGGGGTGGAGGCCGGCGGGAGAGCGAGTCGCCGCTG CCGGCCGGGGTGGAGGCCGGAGGGAGAGCGAGTCGCCGCTG Direct Loss 0.984280504922745 0 0.9078573 0 prediction 0.968561009845491 Functional Loss - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234367230 chr1:234367230 synonymous SNV . 0 21 hm5C_associated_SNPs_46891 0 0 0 0 1 nucleoplasm 0.50023175500517 0 0.8157146 0.000463510010339396 hm5C_site_2211 DeepMRMD:0.8157146;iRNA_m5C:0.000463510010339396 2212 chr17 56247077 56247077 1 + C T rs116853619 56247077 + 56247057 56247097 41 TCCTGGGGCTCTCGCAGACTCGGGAGCTCCAGCGTTTCCTG TCCTGGGGCTCTCGCAGACTTGGGAGCTCCAGCGTTTCCTG Direct Loss 0.984277476194879 0 0.94975376 0 prediction 0.968554952389758 Functional Loss - OR4D2 ENSG00000255713 CDS Human protein_coding chr17:56247077 chr17:56247077 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_46892 0 0 0 0 0 unknown 0.500231643921095 0 0.89950752 0.000463287842190185 hm5C_site_2212 DeepMRMD:0.89950752;iRNA_m5C:0.000463287842190185 2213 chr1 202976569 202976569 1 + C T rs145403258 202976569 + 202976549 202976589 41 CGGAGCTGGCTTGCGGCTCCCGGGGCCGGCTCTCCGGCCGG CGGAGCTGGCTTGCGGCTCCTGGGGCCGGCTCTCCGGCCGG Direct Loss 0.984263962448592 0 0.9327642 0 prediction 0.968527924897184 Functional Loss - TMEM183A;TMEM183B ENSG00000163444 UTR5 Human protein_coding chr1:202976569 chr1:202976569 . . 0 21 hm5C_associated_SNPs_46893 0 0 1 0 0 unknown 0.500231643921092 0 0.8655284 0.000463287842184856 hm5C_site_2213 DeepMRMD:0.8655284;iRNA_m5C:0.000463287842184856 2214 chrX 54836335 54836335 1 + C T LUSC 54836335 + 54836315 54836355 41 TCTCAAAGACCCCAGAGGCTCGGGAGGCACCTGCCACCCAG TCTCAAAGACCCCAGAGGCTTGGGAGGCACCTGCCACCCAG Direct Loss 0.98425352980049 0 0.9212214 0 prediction 0.968507059600979 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54836335 chrX:54836335 nonsynonymous SNV 0.918 1 21 hm5C_associated_SNPs_46894 0 0 1 0 0 chromatin 0.500231643486445 0 0.8424428 0.000463286972889332 hm5C_site_2214 DeepMRMD:0.8424428;iRNA_m5C:0.000463286972889332 2215 chr20 45353912 45353912 1 + C T COAD 45353912 + 45353892 45353932 41 GGCAGGAAGCAAGCCATCCTCGGGAGCAACTTGGTGCTGCT GGCAGGAAGCAAGCCATCCTTGGGAGCAACTTGGTGCTGCT Direct Loss 0.984231171774653 0 0.93585396 0 prediction 0.968462343549305 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45353912 chr20:45353912 synonymous SNV . 0 21 hm5C_associated_SNPs_46895 2 0 1 0 0 Nucleus 0.500231643921093 0 0.87170792 0.000463287842185078 hm5C_site_2215 DeepMRMD:0.87170792;iRNA_m5C:0.000463287842185078 not specified not specified 2216 chr19 42354555 42354555 1 + C T GBM 42354555 + 42354535 42354575 41 ACTTAGAGGGTGGGCAGAAGCGGGGGTTCCCAGTCTGCTTG ACTTAGAGGGTGGGCAGAAGTGGGGGTTCCCAGTCTGCTTG Direct Loss 0.984200732496864 0 0.95552015 0 prediction 0.968401464993727 Functional Loss - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42354555 chr19:42354555 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_46896 0 0 0 0 0 exosome 0.500231716521694 0 0.9110403 0.000463433043387251 hm5C_site_2216 DeepMRMD:0.9110403;iRNA_m5C:0.000463433043387251 2217 chr19 35850303 35850303 1 + C T SKCM 35850303 + 35850283 35850323 41 GCACCAATGGGACCTGCTACCTGGAGTTCCGGAAGGACCAG GCACCAATGGGACCTGCTACTTGGAGTTCCGGAAGGACCAG Direct Loss 0.984168087890171 0 0.5246978 0 prediction 0.968336175780342 Functional Loss - FFAR3 ENSG00000185897 CDS Human protein_coding chr19:35850303 chr19:35850303 synonymous SNV . 0 21 hm5C_associated_SNPs_46897 0 0 0 0 0 exosome 0.500231643921906 0 0.0493956 0.000463287843811999 hm5C_site_2217 DeepMRMD:0.0493956;iRNA_m5C:0.000463287843811999 2218 chr2 5833151 5833151 1 + C T COAD 5833151 + 5833131 5833171 41 GCGAGAAGATCCCGTTCATCCGGGAGGCGGAGCGGCTGCGG GCGAGAAGATCCCGTTCATCTGGGAGGCGGAGCGGCTGCGG Direct Loss 0.984112765942175 0 0.9085276 0 prediction 0.968225531884351 Functional Loss - SOX11 ENSG00000176887 CDS Human protein_coding chr2:5833151 chr2:5833151 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_46898 0 0 0 0 0 exosome 0.500231643115201 0 0.8170552 0.000463286230401039 hm5C_site_2218 DeepMRMD:0.8170552;iRNA_m5C:0.000463286230401039 2219 chr2 45169387 45169387 1 + C T ESCA 45169387 + 45169367 45169407 41 GGCGGCGCGGGAGGCGGCAGCGGCGGCGGGAACGGTGCGGG GGCGGCGCGGGAGGCGGCAGTGGCGGCGGGAACGGTGCGGG Direct Loss 0.984033447348805 0 0.9120139 0 prediction 0.968066894697611 Functional Loss - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45169387 chr2:45169387 synonymous SNV . 0 21 hm5C_associated_SNPs_46899 0 0 0 0 0 exosome 0.500238985121959 0 0.8240278 0.000477970243917492 hm5C_site_2219 DeepMRMD:0.8240278;iRNA_m5C:0.000477970243917492 2220 chr3 50230579 50230579 1 + C T UCEC 50230579 + 50230559 50230599 41 CTTTCAGGTGCCGGTGAGTCCGGGAAGAGCACCATCGTCAA CTTTCAGGTGCCGGTGAGTCTGGGAAGAGCACCATCGTCAA Direct Loss 0.984025815961146 0 0.8825494 0 prediction 0.968051631922292 Functional Loss - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50230579 chr3:50230579 synonymous SNV . 0 21 hm5C_associated_SNPs_46900 0 0 0 0 2 exosome 0.500231643921093 0 0.7650988 0.000463287842186633 hm5C_site_2220 DeepMRMD:0.7650988;iRNA_m5C:0.000463287842186633 2221 chr18 21083604 21083604 1 + C G rs143953070 21083604 + 21083584 21083624 41 TGGGCGAGGAGGACTACTATCTGGAGCTGTGCGAGCGGCCG TGGGCGAGGAGGACTACTATGTGGAGCTGTGCGAGCGGCCG Direct Loss 0.983975084419589 0 0.38255358 0 prediction 0.967950168839177 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21083604 chr18:21083604 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_46901 0 0 1 0 1 Ribosome 0.50023164101299 0 0 0.000463282025980005 hm5C_site_2221 DeepMRMD:0;iRNA_m5C:0.000463282025980005 2222 chr11 118889933 118889933 1 + C A LGG 118889933 + 118889913 118889953 41 GGAAAGAGGTGCTGGAGTATCTGGGTAACCCTGCTAATTAC GGAAAGAGGTGCTGGAGTATATGGGTAACCCTGCTAATTAC Direct Loss 0.983908738818619 0 0.85874474 0 prediction 0.967817477637237 Functional Loss - TRAPPC4 ENSG00000196655 CDS Human protein_coding chr11:118889933 chr11:118889933 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_46902 0 0 1 0 2 Ribosome 0.500232743127325 0 0.71748948 0.000465486254649816 hm5C_site_2222 DeepMRMD:0.71748948;iRNA_m5C:0.000465486254649816 2223 chr5 140554552 140554552 1 + C G PAAD 140554552 + 140554532 140554572 41 TTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCCC TTCGTGGCGGTGCGGCTGTGGAGGAGGAGCAGGGCGGCCCC Direct Loss 0.983907263946333 0 0.9077309 0 prediction 0.967814527892666 Functional Loss - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140554552 chr5:140554552 nonsynonymous SNV 0.593 2 21 hm5C_associated_SNPs_46903 0 0 0 0 0 exosome 0.500231643921093 0 0.8154618 0.000463287842185967 hm5C_site_2223 DeepMRMD:0.8154618;iRNA_m5C:0.000463287842185967 2224 chr11 114569243 114569243 1 + C T BLCA 114569243 + 114569223 114569263 41 AGTGAAGGGGTATCAGCTCTCTGGAGGGCAAGGAACCAAGG AGTGAAGGGGTATCAGCTCTTTGGAGGGCAAGGAACCAAGG Direct Loss 0.983851164654134 0 0.71765924 0 prediction 0.967702329308267 Functional Loss - NXPE2 ENSG00000204361 CDS Human protein_coding chr11:114569243 chr11:114569243 synonymous SNV . 0 21 hm5C_associated_SNPs_46904 0 0 0 0 0 exosome 0.500231643921092 0 0.43531848 0.000463287842184856 hm5C_site_2224 DeepMRMD:0.43531848;iRNA_m5C:0.000463287842184856 2225 chr12 56863200 56863200 1 + C T UCEC 56863200 + 56863180 56863220 41 CAGAGAAGGTGGGGCTGTTGCTGGAGTATGAGGCCCAGAAG CAGAGAAGGTGGGGCTGTTGTTGGAGTATGAGGCCCAGAAG Direct Loss 0.98381953014478 0 0.90196925 0 prediction 0.96763906028956 Functional Loss - SPRYD4 ENSG00000176422 CDS Human protein_coding chr12:56863200 chr12:56863200 synonymous SNV . 0 21 hm5C_associated_SNPs_46905 0 0 1 0 0 Cytosol 0.500231643935118 0 0.8039385 0.000463287870235307 hm5C_site_2225 DeepMRMD:0.8039385;iRNA_m5C:0.000463287870235307 2226 chrX 117861658 117861658 1 + C G MESO 117861658 + 117861638 117861678 41 CTGCTGCTCTGCGCCGGCGGCGGGGGCGGGGGCGGGGGCGC CTGCTGCTCTGCGCCGGCGGGGGGGGCGGGGGCGGGGGCGC Direct Loss 0.983680742881803 0 0.94085145 0 prediction 0.967361485763607 Functional Loss - IL13RA1 ENSG00000131724 CDS Human protein_coding chrX:117861658 chrX:117861658 synonymous SNV . 0 21 hm5C_associated_SNPs_46906 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0 0.8817029 0.000463287842184856 hm5C_site_2226 DeepMRMD:0.8817029;iRNA_m5C:0.000463287842184856 2227 chrX 105855399 105855399 1 + C T COAD 105855399 + 105855379 105855419 41 GAGGAATCGGGCTGGGGTCCCGGGAGGGGTGATCCGAAGAG GAGGAATCGGGCTGGGGTCCTGGGAGGGGTGATCCGAAGAG Direct Loss 0.983675219602312 0 0.9094378 0 prediction 0.967350439204623 Functional Loss - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105855399 chrX:105855399 nonsynonymous SNV 0.874 0 21 hm5C_associated_SNPs_46907 0 0 1 0 0 nucleus 0.500231643921042 0 0.8188756 0.000463287842084048 hm5C_site_2227 DeepMRMD:0.8188756;iRNA_m5C:0.000463287842084048 2228 chr21 38390441 38390441 1 + C A rs542725845 38390441 + 38390421 38390461 41 TCCTCAGGAGGGGGTGACCACTGGGGGGAGGGTCCGCTCCC TCCTCAGGAGGGGGTGACCAATGGGGGGAGGGTCCGCTCCC Direct Loss 0.983635810754696 0 0.9329087 0 prediction 0.967271621509391 Functional Loss - RIPPLY3 ENSG00000183145 CDS Human protein_coding chr21:38390441 chr21:38390441 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_46908 0 0 1 0 0 Nucleus 0.500231643921092 0 0.8658174 0.000463287842184856 hm5C_site_2228 DeepMRMD:0.8658174;iRNA_m5C:0.000463287842184856 2229 chr19 30935046 30935046 1 + C T COAD 30935046 + 30935026 30935066 41 GCAAGGGGCGTGGGCGTGTGCGCGAGGAGAACCGCCTGCTG GCAAGGGGCGTGGGCGTGTGTGCGAGGAGAACCGCCTGCTG Direct Loss 0.983590925035815 0 0.74820673 0 prediction 0.96718185007163 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935046 chr19:30935046 nonsynonymous SNV 0.961 4 21 hm5C_associated_SNPs_46909 0 0 0 0 0 exosome 0.500231643921092 0 0.49641346 0.000463287842184856 hm5C_site_2229 DeepMRMD:0.49641346;iRNA_m5C:0.000463287842184856 2230 chr7 37960546 37960546 1 + C A STAD 37960546 + 37960526 37960566 41 GGGAAGGCTGACCGCGATGCCAGGACGCGCTCCCCTCCGCA GGGAAGGCTGACCGCGATGCAAGGACGCGCTCCCCTCCGCA Direct Loss 0.983584340605658 0 0.90816677 0 prediction 0.967168681211317 Functional Loss - EPDR1 ENSG00000086289 CDS Human protein_coding chr7:37960546 chr7:37960546 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_46910 0 0 1 0 0 Ribosome 0.500231642224452 0 0.81633354 0.000463284448904311 hm5C_site_2230 DeepMRMD:0.81633354;iRNA_m5C:0.000463284448904311 2231 chr2 45169423 45169423 1 + C T STAD 45169423 + 45169403 45169443 41 GCGGGAGGCGGCGGTGCTGGCGGAGCAGGCGGCGGCGGCGG GCGGGAGGCGGCGGTGCTGGTGGAGCAGGCGGCGGCGGCGG Direct Loss 0.983565654249088 0 0.92121685 0 prediction 0.967131308498176 Functional Loss - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45169423 chr2:45169423 synonymous SNV . 0 21 hm5C_associated_SNPs_46911 1 0 0 0 0 exosome 0.500231643921092 0 0.8424337 0.000463287842184856 hm5C_site_2231 DeepMRMD:0.8424337;iRNA_m5C:0.000463287842184856 not specified not specified 2232 chr11 70279300 70279300 1 + C T UCEC 70279300 + 70279280 70279320 41 GCATGGAGGCCGCTGACTACCGAGAGGCCAGCAGCCAGCAG GCATGGAGGCCGCTGACTACTGAGAGGCCAGCAGCCAGCAG Direct Loss 0.983557820850445 0 0.9361471 0 prediction 0.96711564170089 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70279300 chr11:70279300 stopgain 0.001 0 21 hm5C_associated_SNPs_46912 0 0 1 0 2 Ribosome 0.50023164422761 0 0.8722942 0.000463288455220701 hm5C_site_2232 DeepMRMD:0.8722942;iRNA_m5C:0.000463288455220701 2233 chr15 45249121 45249121 1 + C G rs11638723 45249121 + 45249101 45249141 41 AGGGGGAACGATCAGTGACCCGCGAGCCGCCGACTTCTTGT AGGGGGAACGATCAGTGACCGGCGAGCCGCCGACTTCTTGT Direct Loss 0.983542117845353 0 0.6874921 0 prediction 0.967084235690705 Functional Loss - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45249121 chr15:45249121 nonsynonymous SNV 0.036 0 21 hm5C_associated_SNPs_46913 0 0 0 0 2 unknown 0.500231643907914 0 0.3749842 0.000463287815827496 hm5C_site_2233 DeepMRMD:0.3749842;iRNA_m5C:0.000463287815827496 2234 chr13 99853006 99853006 1 + G A rs182889692 99853006 - 99852986 99853026 41 GCACCCGGCGCATGCGCAGTCAGGGGCGTGCGCCCGCTGGG GCACCCGGCGCATGCGCAGTTAGGGGCGTGCGCCCGCTGGG Direct Loss 0.983532368878589 0 0.9495447 0 prediction 0.967064737757178 Functional Loss - UBAC2-AS1 ENSG00000134882;ENSG00000228889 upstream Human other chr13:99853006 chr13:99853006 . . 0 21 hm5C_associated_SNPs_46914 0 0 0 0 0 unknown 0.500230168553809 0 0.8990894 0.000460337107618614 hm5C_site_2234 DeepMRMD:0.8990894;iRNA_m5C:0.000460337107618614 2235 chr15 72767217 72767217 1 + C T STAD 72767217 + 72767197 72767237 41 GCTCTGGGGCCCGGCGGTGGCGGCGGCGGCGGCGGCGGCGG GCTCTGGGGCCCGGCGGTGGTGGCGGCGGCGGCGGCGGCGG Direct Loss 0.983531289185263 0 0.9140323 0 prediction 0.967062578370527 Functional Loss - ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72767217 chr15:72767217 synonymous SNV . 0 21 hm5C_associated_SNPs_46915 0 0 1 0 0 Cytosol 0.500231643920319 0 0.8280646 0.000463287840638538 hm5C_site_2235 DeepMRMD:0.8280646;iRNA_m5C:0.000463287840638538 2236 chrX 120181632 120181632 1 + C A rs113931041 120181632 + 120181612 120181652 41 ACTCGGCCGCGTTGCTGGGCCGGGGCCGCGGACAGCCCGCC ACTCGGCCGCGTTGCTGGGCAGGGGCCGCGGACAGCCCGCC Direct Loss 0.983507210626814 0 0.85943335 0 prediction 0.967014421253628 Functional Loss - GLUD2 ENSG00000182890 CDS Human protein_coding chrX:120181632 chrX:120181632 synonymous SNV . 0 21 hm5C_associated_SNPs_46916 0 0 0 0 0 Ribosome 0.500231643921092 0 0.7188667 0.000463287842184856 hm5C_site_2236 DeepMRMD:0.7188667;iRNA_m5C:0.000463287842184856 2237 chr3 57542432 57542432 1 + C T BLCA 57542432 + 57542412 57542452 41 TAGCGGCGGTGCGGCCTGTTCAGGGCCGGGGCCTGAGCCGG TAGCGGCGGTGCGGCCTGTTTAGGGCCGGGGCCTGAGCCGG Direct Loss 0.983480252983619 0 0.91607815 0 prediction 0.966960505967238 Functional Loss - PDE12 ENSG00000174840 CDS Human protein_coding chr3:57542432 chr3:57542432 nonsynonymous SNV 0.084 0 21 hm5C_associated_SNPs_46917 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8321563 0.000463287842184856 hm5C_site_2237 DeepMRMD:0.8321563;iRNA_m5C:0.000463287842184856 2238 chr15 65369317 65369317 1 + C T STAD 65369317 + 65369297 65369337 41 GCGCCTGGGCGTTCTGAGCGCGGGAGGTTTCCGCGCCACGC GCGCCTGGGCGTTCTGAGCGTGGGAGGTTTCCGCGCCACGC Direct Loss 0.983427939685013 0 0.92981756 0 prediction 0.966855879370026 Functional Loss - KBTBD13 ENSG00000234438 CDS Human protein_coding chr15:65369317 chr15:65369317 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_46918 0 0 0 0 0 unknown 0.500231644135892 0 0.85963512 0.000463288271784768 hm5C_site_2238 DeepMRMD:0.85963512;iRNA_m5C:0.000463288271784768 2239 chr8 128429025 128429025 1 + C T CESC 128429025 + 128429005 128429045 41 GGCTGCTGGGTCTCCTTTCTCAGGGGGACCAGTGTCCTTTC GGCTGCTGGGTCTCCTTTCTTAGGGGGACCAGTGTCCTTTC Direct Loss 0.983406043910241 0 0.9656045 0 prediction 0.966812087820482 Functional Loss - POU5F1B ENSG00000212993 CDS Human protein_coding chr8:128429025 chr8:128429025 nonsynonymous SNV 0.977 1 21 hm5C_associated_SNPs_46919 0 0 0 0 0 exosome 0.500231643921092 0 0.931209 0.000463287842184856 hm5C_site_2239 DeepMRMD:0.931209;iRNA_m5C:0.000463287842184856 2240 chr1 20005562 20005562 1 + C G BLCA 20005562 + 20005542 20005582 41 TGCCATGTCCACGCTGTCCCCGGGAGCGCCAGGCCAGCCTG TGCCATGTCCACGCTGTCCCGGGGAGCGCCAGGCCAGCCTG Direct Loss 0.983297458929371 0 0.9133593 0 prediction 0.966594917858742 Functional Loss - HTR6 ENSG00000158748 CDS Human protein_coding chr1:20005562 chr1:20005562 nonsynonymous SNV 0.045 0 21 hm5C_associated_SNPs_46920 0 0 0 0 0 Cytosol 0.50023164454202 0 0.8267186 0.000463289084039031 hm5C_site_2240 DeepMRMD:0.8267186;iRNA_m5C:0.000463289084039031 2241 chr2 74687554 74687554 1 + C T CESC 74687554 + 74687534 74687574 41 ACCAGAGTGCCCCCCCTCATCAGGAGGGTGAGCCCGGGGCA ACCAGAGTGCCCCCCCTCATTAGGAGGGTGAGCCCGGGGCA Direct Loss 0.983251253321866 0 0.93424684 0 prediction 0.966502506643732 Functional Loss - WBP1 ENSG00000239779 CDS Human protein_coding chr2:74687554 chr2:74687554 stopgain 0.961 0 21 hm5C_associated_SNPs_46921 0 0 1 0 0 cytosol 0.50023164392253 0 0.86849368 0.000463287845059668 hm5C_site_2241 DeepMRMD:0.86849368;iRNA_m5C:0.000463287845059668 2242 chr20 44751647 44751647 1 + C T rs147301204 44751647 + 44751627 44751667 41 TGTCGGGGGCAGTACCACATCGGGGGAAGAGTGCTCAAGGC TGTCGGGGGCAGTACCACATTGGGGGAAGAGTGCTCAAGGC Direct Loss 0.983194258374932 0 0.9302131 0 prediction 0.966388516749864 Functional Loss - CD40 ENSG00000101017 intronic Human protein_coding chr20:44751647 chr20:44751647 . . 0 21 hm5C_associated_SNPs_46922 0 0 0 0 0 Endoplasmic reticulum 0.500231643921093 0 0.8604262 0.000463287842185522 hm5C_site_2242 DeepMRMD:0.8604262;iRNA_m5C:0.000463287842185522 2243 chr11 252841 252841 1 + C T rs3817635 252841 + 252821 252861 41 TCTCAGGGTCTTAGGTGATACGGGAGAGAAAGAACGTGCCA TCTCAGGGTCTTAGGTGATATGGGAGAGAAAGAACGTGCCA Direct Loss 0.983061419723017 0 0.814682 0 prediction 0.966122839446034 Functional Loss - PSMD13 ENSG00000185627 UTR3 Human protein_coding chr11:252841 chr11:252841 . . 0 21 hm5C_associated_SNPs_46923 0 0 1 0 1 Ribosome 0.500231643922843 0 0.629364 0.0004632878456865 hm5C_site_2243 DeepMRMD:0.629364;iRNA_m5C:0.0004632878456865 2244 chr4 72897782 72897782 1 + C T STAD 72897782 + 72897762 72897802 41 GGAGTGGAGCAGGCAGTCCGCGGGGGACAGACGTCGGCTGG GGAGTGGAGCAGGCAGTCCGTGGGGGACAGACGTCGGCTGG Direct Loss 0.982985793519801 0 0.92901915 0 prediction 0.965971587039602 Functional Loss - NPFFR2 ENSG00000056291 CDS Human protein_coding chr4:72897782 chr4:72897782 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_46924 0 0 0 0 0 nucleoplasm 0.500231647005118 0 0.8580383 0.000463294010236481 hm5C_site_2244 DeepMRMD:0.8580383;iRNA_m5C:0.000463294010236481 Systolic blood pressure 2245 chr12 90103979 90103979 1 + C T rs565871215 90103979 + 90103959 90103999 41 CCGGTCGGGTCCGCAAACACCGGGGATCCCAGCTGCGGCGC CCGGTCGGGTCCGCAAACACTGGGGATCCCAGCTGCGGCGC Direct Loss 0.982905862905881 0 0.93313813 0 prediction 0.965811725811761 Functional Loss - ATP2B1-AS1 ENSG00000271614 ncRNA_exonic Human lincRNA chr12:90103979 chr12:90103979 . . 0 21 hm5C_associated_SNPs_46925 0 0 0 0 0 unknown 0.500231643921092 0 0.86627626 0.000463287842183968 hm5C_site_2245 DeepMRMD:0.86627626;iRNA_m5C:0.000463287842183968 2246 chr1 171116864 171116864 1 + C T SARC 171116864 + 171116844 171116884 41 CGTGATTGGTCTGGGGAATTCGGGATCTGACATTGCTGTTG CGTGATTGGTCTGGGGAATTTGGGATCTGACATTGCTGTTG Direct Loss 0.9828855020932 0 0.8975138 0 prediction 0.9657710041864 Functional Loss - FMO6P ENSG00000117507 CDS Human transcribed_unitary_pseudogene chr1:171116864 chr1:171116864 nonsynonymous SNV 0.273 3 21 hm5C_associated_SNPs_46926 0 0 0 0 2 unknown 0.500231643921635 0 0.7950276 0.000463287843269322 hm5C_site_2246 DeepMRMD:0.7950276;iRNA_m5C:0.000463287843269322 2247 chr12 81111214 81111214 1 + C G BLCA 81111214 + 81111194 81111234 41 CTGCCCAAGGTGGAGATCCTCAGGAATGCCATCCGCTACAT CTGCCCAAGGTGGAGATCCTGAGGAATGCCATCCGCTACAT Direct Loss 0.982838650616388 0 0.9433174 0 prediction 0.965677301232776 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81111214 chr12:81111214 synonymous SNV . 0 21 hm5C_associated_SNPs_46927 0 0 0 0 0 unknown 0.500229159458698 0 0.8866348 0.000458318917395006 hm5C_site_2247 DeepMRMD:0.8866348;iRNA_m5C:0.000458318917395006 2248 chr16 72146635 72146635 1 + C T rs536082272 72146635 + 72146615 72146655 41 CCGAGGTGCTGCCGGGGCAGCGGGAGGTGGCTGGACCCATC CCGAGGTGCTGCCGGGGCAGTGGGAGGTGGCTGGACCCATC Direct Loss 0.982832892181402 0 0.902234 0 prediction 0.965665784362803 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72146635 chr16:72146635 nonsynonymous SNV 0.014 0 21 hm5C_associated_SNPs_46928 0 0 1 0 0 Cytosol 0.500231643921092 0 0.804468 0.000463287842184856 hm5C_site_2248 DeepMRMD:0.804468;iRNA_m5C:0.000463287842184856 2249 chr1 110882488 110882488 1 + C T OV 110882488 + 110882468 110882508 41 AGGCGGGGAGTCACGTTCCTCTGGGGCCGCCTCCTCAGCTC AGGCGGGGAGTCACGTTCCTTTGGGGCCGCCTCCTCAGCTC Direct Loss 0.982825659409056 0 0.92665505 0 prediction 0.965651318818111 Functional Loss - RBM15 ENSG00000162775 CDS Human protein_coding chr1:110882488 chr1:110882488 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_46929 0 0 1 0 0 Nucleus 0.500231643917174 0 0.8533101 0.000463287834348458 hm5C_site_2249 DeepMRMD:0.8533101;iRNA_m5C:0.000463287834348458 2250 chr7 107302129 107302129 1 + G A CESC 107302129 - 107302109 107302149 41 CATGTAGCTGCAGCTGTACTCGGGGAGCTGCGGCGGCTCCG CATGTAGCTGCAGCTGTACTTGGGGAGCTGCGGCGGCTCCG Direct Loss 0.982811604889946 0 0.95306826 0 prediction 0.965623209779892 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107302129 chr7:107302129 nonsynonymous SNV 0.757 1 21 hm5C_associated_SNPs_46930 0 0 0 0 1 Nucleus 0.500231643921093 0 0.90613652 0.000463287842186189 hm5C_site_2250 DeepMRMD:0.90613652;iRNA_m5C:0.000463287842186189 2251 chr6 28327544 28327544 1 + C T CESC 28327544 + 28327524 28327564 41 ACCCGGAGGCTGCAGGCCCCCGCGAGGCGCTGAGTCGGCTC ACCCGGAGGCTGCAGGCCCCTGCGAGGCGCTGAGTCGGCTC Direct Loss 0.982810100129142 0 0.8751546 0 prediction 0.965620200258284 Functional Loss - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28327544 chr6:28327544 nonsynonymous SNV 0.018 3 21 hm5C_associated_SNPs_46931 0 0 0 0 0 exosome 0.500231636465122 0 0.7503092 0.000463272930244285 hm5C_site_2251 DeepMRMD:0.7503092;iRNA_m5C:0.000463272930244285 2252 chrX 72667461 72667461 1 + C T UCEC 72667461 + 72667441 72667481 41 CCTGTGGGCGGTGGAACTAGCGGCAGCAGCCTACCAGGCCA CCTGTGGGCGGTGGAACTAGTGGCAGCAGCCTACCAGGCCA Direct Loss 0.98279378309147 0 0.91077125 0 prediction 0.96558756618294 Functional Loss - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72667461 chrX:72667461 synonymous SNV . 0 21 hm5C_associated_SNPs_46932 0 0 0 0 0 exosome 0.500231643921092 0 0.8215425 0.000463287842184856 hm5C_site_2252 DeepMRMD:0.8215425;iRNA_m5C:0.000463287842184856 2253 chrX 51486790 51486790 1 + C T rs147103223 51486790 + 51486770 51486810 41 CCAGGTGGACATGGAATCCCCGGGGTCGGCCCCGAGCGGGG CCAGGTGGACATGGAATCCCTGGGGTCGGCCCCGAGCGGGG Direct Loss 0.982711632813668 0 0.9064553 0 prediction 0.965423265627335 Functional Loss - GSPT2 ENSG00000189369 CDS Human protein_coding chrX:51486790 chrX:51486790 nonsynonymous SNV 0.679 1 21 hm5C_associated_SNPs_46933 0 0 1 0 0 Cytosol 0.500231643919226 0 0.8129106 0.000463287838452064 hm5C_site_2253 DeepMRMD:0.8129106;iRNA_m5C:0.000463287838452064 2254 chr22 25627692 25627692 1 + C T STAD 25627692 + 25627672 25627712 41 TGCAGTCCGTGCGCCGTATCCGCGACATGCAGTGGCACCAA TGCAGTCCGTGCGCCGTATCTGCGACATGCAGTGGCACCAA Direct Loss 0.982700650244645 0 0.84506875 0 prediction 0.96540130048929 Functional Loss - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25627692 chr22:25627692 nonsynonymous SNV 0.958 4 21 hm5C_associated_SNPs_46934 0 0 0 0 0 exosome 0.500231643710946 0 0.6901375 0.000463287421891501 hm5C_site_2254 DeepMRMD:0.6901375;iRNA_m5C:0.000463287421891501 2255 chr12 110206866 110206866 1 + C T SKCM 110206866 + 110206846 110206886 41 AGCTGGGGCCGGGGGCAGCCCGGGAGCTGGCTGGGCCCCCT AGCTGGGGCCGGGGGCAGCCTGGGAGCTGGCTGGGCCCCCT Direct Loss 0.98269099051968 0 0.9102643 0 prediction 0.96538198103936 Functional Loss - FAM222A ENSG00000139438 CDS Human protein_coding chr12:110206866 chr12:110206866 nonsynonymous SNV 0.524 4 21 hm5C_associated_SNPs_46935 0 0 0 0 0 exosome 0.500231643921092 0 0.8205286 0.000463287842184856 hm5C_site_2255 DeepMRMD:0.8205286;iRNA_m5C:0.000463287842184856 2256 chr16 2732597 2732597 1 + C T CESC 2732597 + 2732577 2732617 41 TCGCCGGCCCGGGGCGGCATCGGGGCGGGGCTGGGGGGCGG TCGCCGGCCCGGGGCGGCATTGGGGCGGGGCTGGGGGGCGG Direct Loss 0.982656813176235 0 0.93718964 0 prediction 0.96531362635247 Functional Loss - KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2732597 chr16:2732597 synonymous SNV . 0 21 hm5C_associated_SNPs_46936 0 0 1 0 0 Ribosome 0.500231643293277 0 0.87437928 0.000463286586553036 hm5C_site_2256 DeepMRMD:0.87437928;iRNA_m5C:0.000463286586553036 2257 chr13 46039243 46039243 1 + C G UCEC 46039243 + 46039223 46039263 41 GCTAGGGAAAAGCTGGCTCTCTGGGATCGGAGACCGGACAC GCTAGGGAAAAGCTGGCTCTGTGGGATCGGAGACCGGACAC Direct Loss 0.982614531435905 0 0.85474145 0 prediction 0.96522906287181 Functional Loss - COG3 ENSG00000136152 CDS Human protein_coding chr13:46039243 chr13:46039243 synonymous SNV . 0 21 hm5C_associated_SNPs_46937 0 0 1 0 0 Nucleus 0.500231643921092 0 0.7094829 0.000463287842184856 hm5C_site_2257 DeepMRMD:0.7094829;iRNA_m5C:0.000463287842184856 2258 chrX 129546778 129546778 1 + C T UCEC 129546778 + 129546758 129546798 41 ATAAAAGGGCCCGACGCTCCCGGGAGCGGGAGTCTTCGAAT ATAAAAGGGCCCGACGCTCCTGGGAGCGGGAGTCTTCGAAT Direct Loss 0.982550524239328 0 0.9420513 0 prediction 0.965101048478656 Functional Loss - RBMX2 ENSG00000134597 CDS Human protein_coding chrX:129546778 chrX:129546778 nonsynonymous SNV 0.115 0 21 hm5C_associated_SNPs_46938 0 0 1 0 0 exosome 0.500231643921666 0 0.8841026 0.000463287843332605 hm5C_site_2258 DeepMRMD:0.8841026;iRNA_m5C:0.000463287843332605 2259 chr1 47904154 47904154 1 + C T CESC 47904154 + 47904134 47904174 41 GCCCGGGCCGGGACCGCCGTCGGGGGGCGCGGCGACGCGGA GCCCGGGCCGGGACCGCCGTTGGGGGGCGCGGCGACGCGGA Direct Loss 0.982540562196428 0 0.9448406 0 prediction 0.965081124392857 Functional Loss - FOXD2 ENSG00000186564 CDS Human protein_coding chr1:47904154 chr1:47904154 nonsynonymous SNV 0.141 2 21 hm5C_associated_SNPs_46939 0 0 0 0 0 chromatin 0.500232173810252 0 0.8896812 0.000464347620503291 hm5C_site_2259 DeepMRMD:0.8896812;iRNA_m5C:0.000464347620503291 2260 chr7 53103781 53103781 1 + C T BLCA 53103781 + 53103761 53103801 41 ACCTGGAGCCCGGTGACCATCGGGATCGCGCCCCCTGAGCG ACCTGGAGCCCGGTGACCATTGGGATCGCGCCCCCTGAGCG Direct Loss 0.982487001186974 0 0.94109964 0 prediction 0.964974002373947 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103781 chr7:53103781 synonymous SNV . 0 21 hm5C_associated_SNPs_46940 0 0 0 0 0 unknown 0.500231643922689 0 0.88219928 0.000463287845377192 hm5C_site_2260 DeepMRMD:0.88219928;iRNA_m5C:0.000463287845377192 2261 chr11 70281715 70281715 1 + C A UCEC 70281715 + 70281695 70281735 41 TCCCAGACGAGGGGCTTCCTCTAGAGTCTCACTGCTGGGGA TCCCAGACGAGGGGCTTCCTATAGAGTCTCACTGCTGGGGA Direct Loss 0.982429013921615 0 0.5007759 0 prediction 0.964858027843231 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70281715 chr11:70281715 nonsynonymous SNV 0.009 2 21 hm5C_associated_SNPs_46941 0 0 1 0 0 Ribosome 0.500231643921092 0 0.0015518000000001 0.000463287842184856 hm5C_site_2261 DeepMRMD:0.0015518000000001;iRNA_m5C:0.000463287842184856 2262 chr11 92702959 92702959 1 + C A KIRC 92702959 + 92702939 92702979 41 GGCAGTGCGCCCGGGCTGGTCGGGGGCTGGCAGCGCGCGGC GGCAGTGCGCCCGGGCTGGTAGGGGGCTGGCAGCGCGCGGC Direct Loss 0.982409331046462 0 0.938676 0 prediction 0.964818662092925 Functional Loss - MTNR1B ENSG00000134640 CDS Human protein_coding chr11:92702959 chr11:92702959 stopgain 0.006 0 21 hm5C_associated_SNPs_46942 0 0 0 0 0 unknown 0.500231644215762 0 0.877352 0.000463288431524767 hm5C_site_2262 DeepMRMD:0.877352;iRNA_m5C:0.000463288431524767 2263 chrX 103294711 103294711 1 + C T rs184243088 103294711 + 103294691 103294731 41 AACCGCCGTGGGGACAGCTTCGGGGACAGCTTCACCCCCTA AACCGCCGTGGGGACAGCTTTGGGGACAGCTTCACCCCCTA Direct Loss 0.982404403473061 0 0.948877 0 prediction 0.964808806946123 Functional Loss - H2BFM ENSG00000101812 CDS Human protein_coding chrX:103294711 chrX:103294711 synonymous SNV . 0 21 hm5C_associated_SNPs_46943 0 0 0 0 0 unknown 0.500231643921105 0 0.897754 0.000463287842209503 hm5C_site_2263 DeepMRMD:0.897754;iRNA_m5C:0.000463287842209503 2264 chr20 3870266 3870266 1 + C G rs71647829 3870266 + 3870246 3870286 41 GCGAGCAGCGCGTCGGTGCCCGCGGTCGGGGCCTCGGCTGA GCGAGCAGCGCGTCGGTGCCGGCGGTCGGGGCCTCGGCTGA Direct Loss 0.982346864710986 0 0.910763 0 prediction 0.964693729421972 Functional Loss - PANK2 ENSG00000125779 CDS Human protein_coding chr20:3870266 chr20:3870266 synonymous SNV . 0 21 hm5C_associated_SNPs_46944 1 0 1 0 0 Ribosome 0.500231643921384 0 0.821526 0.000463287842768612 hm5C_site_2264 DeepMRMD:0.821526;iRNA_m5C:0.000463287842768612 Pigmentary pallidal degeneration Pigmentary pallidal degeneration 2265 chr17 3119791 3119791 1 + C T SKCM 3119791 + 3119771 3119811 41 TCATCTACAGTCTGAGAAATCGGGACATGAAGGCTGCCCTG TCATCTACAGTCTGAGAAATTGGGACATGAAGGCTGCCCTG Direct Loss 0.982329335881802 0 0.9314021 0 prediction 0.964658671763604 Functional Loss - OR1A1 ENSG00000172146 CDS Human protein_coding chr17:3119791 chr17:3119791 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_46945 0 0 0 0 0 unknown 0.500231643932654 0 0.8628042 0.000463287865307915 hm5C_site_2265 DeepMRMD:0.8628042;iRNA_m5C:0.000463287865307915 2266 chr2 70506840 70506840 1 + C T rs192786189 70506840 + 70506820 70506860 41 GGCAGGAGAATTGCCTCAACCGGGAGGCGGAGGTTGCAGTG GGCAGGAGAATTGCCTCAACTGGGAGGCGGAGGTTGCAGTG Direct Loss 0.982318404955139 0 0.93751335 0 prediction 0.964636809910278 Functional Loss - PCYOX1 ENSG00000116005 UTR3 Human protein_coding chr2:70506840 chr2:70506840 . . 0 21 hm5C_associated_SNPs_46946 0 0 0 0 0 Ribosome 0.500231643921093 0 0.8750267 0.000463287842185078 hm5C_site_2266 DeepMRMD:0.8750267;iRNA_m5C:0.000463287842185078 2267 chrX 57618511 57618511 1 + C T CESC 57618511 + 57618491 57618531 41 CCGAAGCTGCTCCCGGCTCGCGGGACACTACAGGGCGGCGG CCGAAGCTGCTCCCGGCTCGTGGGACACTACAGGGCGGCGG Direct Loss 0.982240714458519 0 0.91635406 0 prediction 0.964481428917037 Functional Loss - ZXDB ENSG00000198455 CDS Human protein_coding chrX:57618511 chrX:57618511 synonymous SNV . 0 21 hm5C_associated_SNPs_46947 0 0 0 0 0 Cytosol 0.500231643921154 0 0.83270812 0.000463287842307869 hm5C_site_2267 DeepMRMD:0.83270812;iRNA_m5C:0.000463287842307869 2268 chr11 109294695 109294695 1 + C T PRAD 109294695 + 109294675 109294715 41 TGCAGCGGCAGCCGCGGTGGCGGGGGGCTGCCCCGACCTGG TGCAGCGGCAGCCGCGGTGGTGGGGGGCTGCCCCGACCTGG Direct Loss 0.982181993802482 0 0.9300498 0 prediction 0.964363987604963 Functional Loss - C11orf87 ENSG00000185742 CDS Human protein_coding chr11:109294695 chr11:109294695 synonymous SNV . 0 21 hm5C_associated_SNPs_46948 0 0 0 0 0 exosome 0.499971440546684 0 0.8600996 0 hm5C_site_2268 DeepMRMD:0.8600996;iRNA_m5C:0 2269 chr3 159706691 159706691 1 + C G rs55734218 159706691 + 159706671 159706711 41 ACGGCTGCGGCCGGGCACCCCGGGAGTTAATCCGAAAGCGC ACGGCTGCGGCCGGGCACCCGGGGAGTTAATCCGAAAGCGC Direct Loss 0.98217995526802 0 0.89632225 0 prediction 0.96435991053604 Functional Loss - IL12A-AS1 ENSG00000244040 ncRNA_intronic Human antisense chr3:159706691 chr3:159706691 . . 0 21 hm5C_associated_SNPs_46949 0 0 0 0 0 unknown 0.500231643921092 0 0.7926445 0.000463287842184856 hm5C_site_2269 DeepMRMD:0.7926445;iRNA_m5C:0.000463287842184856 2270 chr3 122514153 122514153 1 + C G LUSC 122514153 + 122514133 122514173 41 GCGGCGGCGGCGGCGCTGCCCGCGGCGGTCCCGGGTCCCGG GCGGCGGCGGCGGCGCTGCCGGCGGCGGTCCCGGGTCCCGG Direct Loss 0.982165339045297 0 0.78365064 0 prediction 0.964330678090595 Functional Loss - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122514153 chr3:122514153 synonymous SNV . 0 21 hm5C_associated_SNPs_46950 0 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0 0.56730128 0.000463287842186633 hm5C_site_2270 DeepMRMD:0.56730128;iRNA_m5C:0.000463287842186633 2271 chr5 121187759 121187759 1 + C T SKCM 121187759 + 121187739 121187779 41 GCTCCCGCTGCGTTGGGCCCCGGGGCGCCCCTTGGACCCCA GCTCCCGCTGCGTTGGGCCCTGGGGCGCCCCTTGGACCCCA Direct Loss 0.982153345563749 0 0.8998507 0 prediction 0.964306691127497 Functional Loss - FTMT ENSG00000181867 CDS Human protein_coding chr5:121187759 chr5:121187759 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_46951 0 0 0 0 0 unknown 0.500231643921093 0 0.7997014 0.000463287842186633 hm5C_site_2271 DeepMRMD:0.7997014;iRNA_m5C:0.000463287842186633 2272 chr10 82192186 82192186 1 + C T rs114611572 82192186 + 82192166 82192206 41 GTGAGCAAGTCACTTGAGGTCGGGAGTTCGAGACCAGCCTG GTGAGCAAGTCACTTGAGGTTGGGAGTTCGAGACCAGCCTG Direct Loss 0.982066929005323 0 0.9272814 0 prediction 0.964133858010645 Functional Loss - FAM213A ENSG00000122378 UTR3 Human protein_coding chr10:82192186 chr10:82192186 . . 0 21 hm5C_associated_SNPs_46952 0 0 1 0 0 Ribosome 0.50023164392561 0 0.8545628 0.000463287851220073 hm5C_site_2272 DeepMRMD:0.8545628;iRNA_m5C:0.000463287851220073 2273 chr11 20385620 20385620 1 + C T rs79794774 20385620 + 20385600 20385640 41 GCTCAGGTGCGGGCGATGGCCGGGGAGCCGCGCCCCGCACG GCTCAGGTGCGGGCGATGGCTGGGGAGCCGCGCCCCGCACG Direct Loss 0.982043919029926 0 0.9416456 0 prediction 0.964087838059852 Functional Loss - HTATIP2 ENSG00000109854 UTR5 Human protein_coding chr11:20385620 chr11:20385620 . . 0 21 hm5C_associated_SNPs_46953 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8832912 0.000463287842184856 hm5C_site_2273 DeepMRMD:0.8832912;iRNA_m5C:0.000463287842184856 2274 chr16 56510989 56510989 1 + C T rs112571594 56510989 + 56510969 56511009 41 AGGCGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTC AGGCGGAGGTTGCAGTGAGCTGAGATTGTGCCACTGCACTC Direct Loss 0.982031824783488 0 0.89336485 0 prediction 0.964063649566977 Functional Loss - OGFOD1 ENSG00000087263 UTR3 Human protein_coding chr16:56510989 chr16:56510989 . . 0 21 hm5C_associated_SNPs_46954 0 0 0 0 0 Ribosome 0.500102136720866 0 0.7867297 0.000204273441731795 hm5C_site_2274 DeepMRMD:0.7867297;iRNA_m5C:0.000204273441731795 Idiopathic dilated cardiomyopathy 2275 chr11 126873447 126873447 1 + C G rs563833598 126873447 + 126873427 126873467 41 TCGCGTCCGGGGGCGGCGCGCGGGGGAAGGGGTCTCTGGAC TCGCGTCCGGGGGCGGCGCGGGGGGGAAGGGGTCTCTGGAC Direct Loss 0.981929388829562 0 0.94156325 0 prediction 0.963858777659125 Functional Loss - KIRREL3-AS3 ENSG00000218109;ENSG00000256527 ncRNA_exonic Human other chr11:126873447 chr11:126873447 . . 0 21 hm5C_associated_SNPs_46955 0 0 0 0 0 unknown 0.500232176271133 0 0.8831265 0.000464352542266289 hm5C_site_2275 DeepMRMD:0.8831265;iRNA_m5C:0.000464352542266289 2276 chr17 30696710 30696710 1 + C T SKCM 30696710 + 30696690 30696730 41 CGCCAATGGTGCCCCCTTACCAGGGTGGGCCTCCTCGACCT CGCCAATGGTGCCCCCTTACTAGGGTGGGCCTCCTCGACCT Direct Loss 0.981825694856874 0 0.95262486 0 prediction 0.963651389713748 Functional Loss - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30696710 chr17:30696710 stopgain 1.000 1 21 hm5C_associated_SNPs_46956 0 0 1 0 3 Ribosome 0.500231643920979 0 0.90524972 0.000463287841957705 hm5C_site_2276 DeepMRMD:0.90524972;iRNA_m5C:0.000463287841957705 2277 chr10 22541670 22541670 1 + C T rs528507523 22541670 + 22541650 22541690 41 AGGGCGCACGCTGCGGGTACCGGGGCTTGGGGGCGCTCCTG AGGGCGCACGCTGCGGGTACTGGGGCTTGGGGGCGCTCCTG Direct Loss 0.981817954926497 0 0.9462541 0 prediction 0.963635909852994 Functional Loss - LOC100130992 ENSG00000227462;ENSG00000261671 intergenic Human other chr10:22541670 chr10:22541670 . . 0 21 hm5C_associated_SNPs_46957 0 0 0 0 0 unknown 0.500231652848669 0 0.8925082 0.00046330569733799 hm5C_site_2277 DeepMRMD:0.8925082;iRNA_m5C:0.00046330569733799 2278 chr12 72332824 72332824 1 + C A STAD 72332824 + 72332804 72332844 41 GGGCACGGAGAGGGTTTTCCCTGGATTCAGCAGTGCCCGAA GGGCACGGAGAGGGTTTTCCATGGATTCAGCAGTGCCCGAA Direct Loss 0.98170310410522 0 0.83255863 0 prediction 0.96340620821044 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72332824 chr12:72332824 nonsynonymous SNV 0.629 3 21 hm5C_associated_SNPs_46958 0 0 0 0 1 exosome 0.500231643921092 0 0.66511726 0.000463287842184856 hm5C_site_2278 DeepMRMD:0.66511726;iRNA_m5C:0.000463287842184856 2279 chr4 17616306 17616306 1 + C T THYM 17616306 + 17616286 17616326 41 TCCACTAGGGGGTATGTTTTCTGGGCAGCCACCCGGTCCCC TCCACTAGGGGGTATGTTTTTTGGGCAGCCACCCGGTCCCC Direct Loss 0.981697294888956 0 0.92512304 0 prediction 0.963394589777911 Functional Loss - MED28 ENSG00000118579 CDS Human protein_coding chr4:17616306 chr4:17616306 nonsynonymous SNV 0.828 1 21 hm5C_associated_SNPs_46959 0 0 1 0 0 Ribosome 0.500231643921092 0 0.85024608 0.000463287842184856 hm5C_site_2279 DeepMRMD:0.85024608;iRNA_m5C:0.000463287842184856 2280 chrX 144337575 144337575 1 + C A rs4827781 144337575 + 144337555 144337595 41 ACTTACCTGAAGGATCTTCACAGGAGGATAAAGACGTAGAA ACTTACCTGAAGGATCTTCAAAGGAGGATAAAGACGTAGAA Direct Loss 0.981660089925665 0 0.8421746 0 prediction 0.96332017985133 Functional Loss - SPANXN1 ENSG00000203923 UTR3 Human protein_coding chrX:144337575 chrX:144337575 . . 0 21 hm5C_associated_SNPs_46960 0 0 0 0 0 unknown 0.500231642758705 0 0.6843492 0.000463285517410261 hm5C_site_2280 DeepMRMD:0.6843492;iRNA_m5C:0.000463285517410261 2281 chr17 79202840 79202840 1 + G A OV 79202840 - 79202820 79202860 41 GGTGGGGGCTGGGGCTGCTGCGGGAGAGTCCTGTCCTGATG GGTGGGGGCTGGGGCTGCTGTGGGAGAGTCCTGTCCTGATG Direct Loss 0.981651183453229 0 0.9278548 0 prediction 0.963302366906458 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79202840 chr17:79202840 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_46961 0 0 0 0 0 chromatin 0.500231643921137 0 0.8557096 0.000463287842273008 hm5C_site_2281 DeepMRMD:0.8557096;iRNA_m5C:0.000463287842273008 2282 chr16 67208152 67208152 1 + C T BLCA 67208152 + 67208132 67208172 41 CGAGACGCTGCAGGCGGACTCGGGACTGCTGTTGGACGCGC CGAGACGCTGCAGGCGGACTTGGGACTGCTGTTGGACGCGC Direct Loss 0.981634209834134 0 0.9073533 0 prediction 0.963268419668268 Functional Loss - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208152 chr16:67208152 nonsynonymous SNV 0.765 3 21 hm5C_associated_SNPs_46962 0 0 1 0 1 Ribosome 0.500231643921023 0 0.8147066 0.000463287842045856 hm5C_site_2282 DeepMRMD:0.8147066;iRNA_m5C:0.000463287842045856 2283 chr5 178287106 178287106 1 + C T rs554080483 178287106 + 178287086 178287126 41 TGCGGCGGGGAGGCGCGGCCCGGGAACGCGGGATCCTGGGG TGCGGCGGGGAGGCGCGGCCTGGGAACGCGGGATCCTGGGG Direct Loss 0.981520176863049 0 0.9077889 0 prediction 0.963040353726098 Functional Loss - ZNF354B ENSG00000178338 UTR5 Human protein_coding chr5:178287106 chr5:178287106 . . 0 21 hm5C_associated_SNPs_46963 0 0 1 0 1 nucleoplasm 0.50023164392273 0 0.8155778 0.000463287845459126 hm5C_site_2283 DeepMRMD:0.8155778;iRNA_m5C:0.000463287845459126 2284 chr9 12694255 12694255 1 + C A rs34509359 12694255 + 12694235 12694275 41 CCCATGATGGCAGAGATGATCGGGAGGTCTGGCCCTTGCGC CCCATGATGGCAGAGATGATAGGGAGGTCTGGCCCTTGCGC Direct Loss 0.981514239205673 0 0.9549323 0 prediction 0.963028478411345 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12694255 chr9:12694255 synonymous SNV . 0 21 hm5C_associated_SNPs_46964 2 0 0 0 0 exosome 0.500231657937385 0 0.9098646 0.000463315874769998 hm5C_site_2284 DeepMRMD:0.9098646;iRNA_m5C:0.000463315874769998 not specified not specified 2285 chr1 231474181 231474181 1 + C G rs143523668 231474181 + 231474161 231474201 41 TTCAGGAGGAGTGGAACTTGCAGGAGGCGGAGCGCGATCAT TTCAGGAGGAGTGGAACTTGGAGGAGGCGGAGCGCGATCAT Direct Loss 0.981496383411783 0 0.92410874 0 prediction 0.962992766823566 Functional Loss - SPRTN ENSG00000010072 CDS Human protein_coding chr1:231474181 chr1:231474181 nonsynonymous SNV 0.620 0 21 hm5C_associated_SNPs_46965 0 0 1 0 0 nucleoplasm 0.500248282781262 0 0.84821748 0.000496565562524864 hm5C_site_2285 DeepMRMD:0.84821748;iRNA_m5C:0.000496565562524864 2286 chr1 160340766 160340766 1 + C T STAD 160340766 + 160340746 160340786 41 GTACCGCACGGCCCACGCCACGCGAGAACGCATCCGCGTGG GTACCGCACGGCCCACGCCATGCGAGAACGCATCCGCGTGG Direct Loss 0.981479252497679 0 0.38945442 0 prediction 0.962958504995359 Functional Loss - NHLH1 ENSG00000171786 CDS Human protein_coding chr1:160340766 chr1:160340766 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_46966 0 0 1 0 0 Cytosol 0.500220337244923 0 0 0.000440674489845083 hm5C_site_2286 DeepMRMD:0;iRNA_m5C:0.000440674489845083 2287 chr20 61443707 61443707 1 + C T UCEC 61443707 + 61443687 61443727 41 GCTGGTGCGGCGGGAGCTGCCGGGGGTGCGGCAGAGTGCCC GCTGGTGCGGCGGGAGCTGCTGGGGGTGCGGCAGAGTGCCC Direct Loss 0.981424624005847 0 0.94408274 0 prediction 0.962849248011694 Functional Loss - OGFR ENSG00000060491 CDS Human protein_coding chr20:61443707 chr20:61443707 nonsynonymous SNV 0.067 3 21 hm5C_associated_SNPs_46967 0 0 1 0 0 Ribosome 0.500231644209953 0 0.88816548 0.000463288419905616 hm5C_site_2287 DeepMRMD:0.88816548;iRNA_m5C:0.000463288419905616 2288 chr15 41227207 41227207 1 + C T BRCA 41227207 + 41227187 41227227 41 GCTTCAATGGGGGCTCCTGCCGGGAGCGCAACCAGGGGGCC GCTTCAATGGGGGCTCCTGCTGGGAGCGCAACCAGGGGGCC Direct Loss 0.981416639314373 0 0.91413856 0 prediction 0.962833278628746 Functional Loss - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41227207 chr15:41227207 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_46968 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.82827712 0.000463287842184856 hm5C_site_2288 DeepMRMD:0.82827712;iRNA_m5C:0.000463287842184856 2289 chr19 36120454 36120454 1 + C G LUAD 36120454 + 36120434 36120474 41 AGTTCTGGGGGCTCCAGTACCTGGAATCCCAACTGCTGTGC AGTTCTGGGGGCTCCAGTACGTGGAATCCCAACTGCTGTGC Direct Loss 0.981404835678171 0 0.8686094 0 prediction 0.962809671356342 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36120454 chr19:36120454 nonsynonymous SNV 0.980 1 21 hm5C_associated_SNPs_46969 0 0 1 0 1 Ribosome 0.500231741599903 0 0.7372188 0.000463483199806936 hm5C_site_2289 DeepMRMD:0.7372188;iRNA_m5C:0.000463483199806936 2290 chr16 216068 216068 1 + C T HNSC 216068 + 216048 216088 41 GCGGGCCACGAGGCGCAATTCGGGGCGGAGCTGCTGCTCAG GCGGGCCACGAGGCGCAATTTGGGGCGGAGCTGCTGCTCAG Direct Loss 0.981346095676295 0 0.95800126 0 prediction 0.962692191352591 Functional Loss - HBM ENSG00000206177 CDS Human protein_coding chr16:216068 chr16:216068 synonymous SNV . 0 21 hm5C_associated_SNPs_46970 0 0 0 0 1 exosome 0.500231643401056 0 0.91600252 0.000463286802112384 hm5C_site_2290 DeepMRMD:0.91600252;iRNA_m5C:0.000463286802112384 2291 chr6 151773706 151773706 1 + C T LUSC 151773706 + 151773686 151773726 41 TGTCGTCCCGGCGTCTCTCTCAGGACAGGACGTGGGGTTAG TGTCGTCCCGGCGTCTCTCTTAGGACAGGACGTGGGGTTAG Direct Loss 0.981336433302633 0 0.92392755 0 prediction 0.962672866605266 Functional Loss - ARMT1 ENSG00000146476 CDS Human protein_coding chr6:151773706 chr6:151773706 nonsynonymous SNV 0.037 1 21 hm5C_associated_SNPs_46971 0 0 1 0 1 Ribosome 0.500231643196761 0 0.8478551 0.000463286393521001 hm5C_site_2291 DeepMRMD:0.8478551;iRNA_m5C:0.000463286393521001 2292 chr4 144480745 144480745 1 + C T COAD 144480745 + 144480725 144480765 41 ACCCAAGAGAGAGGCCGTCGCGGGAGCGGAAGAAGCTGGAC ACCCAAGAGAGAGGCCGTCGTGGGAGCGGAAGAAGCTGGAC Direct Loss 0.981241210079472 0 0.909353 0 prediction 0.962482420158944 Functional Loss - GUSBP5 ENSG00000236296 ncRNA_exonic Human transcribed_processed_pseudogene chr4:144480745 chr4:144480745 . . 0 21 hm5C_associated_SNPs_46972 0 0 0 0 0 unknown 0.50023164394733 0 0.818706 0.000463287894659103 hm5C_site_2292 DeepMRMD:0.818706;iRNA_m5C:0.000463287894659103 2293 chr16 732385 732385 1 + G A UCEC 732385 - 732365 732405 41 GGTCAGGGGGCTCCGGGTCACGGGGTCAAAATGACCCACAC GGTCAGGGGGCTCCGGGTCATGGGGTCAAAATGACCCACAC Direct Loss 0.981181425038265 0 0.9301066 0 prediction 0.962362850076531 Functional Loss - STUB1 ENSG00000103266 CDS Human protein_coding chr16:732385 chr16:732385 nonsynonymous SNV 0.992 3 21 hm5C_associated_SNPs_46973 0 0 1 0 0 Endoplasmic reticulum 0.500231643921112 0 0.8602132 0.000463287842223048 hm5C_site_2293 DeepMRMD:0.8602132;iRNA_m5C:0.000463287842223048 2294 chr1 34330054 34330054 1 + C G SKCM 34330054 + 34330034 34330074 41 AGAGGAAGAAACGGAGAAAGCGGGATCCCCAGGAACCCAGA AGAGGAAGAAACGGAGAAAGGGGGATCCCCAGGAACCCAGA Direct Loss 0.981124592252951 0 0.91642594 0 prediction 0.962249184505901 Functional Loss - HMGB4 ENSG00000176256 CDS Human protein_coding chr1:34330054 chr1:34330054 nonsynonymous SNV 0.882 3 21 hm5C_associated_SNPs_46974 0 0 0 0 0 unknown 0.500231643921092 0 0.83285188 0.000463287842184856 hm5C_site_2294 DeepMRMD:0.83285188;iRNA_m5C:0.000463287842184856 2295 chr17 46628488 46628488 1 + G A PRAD 46628488 - 46628468 46628508 41 GGCGGAGGCAGTGGTGGCAGCGGGGGCGGTGGCGGCGGCGG GGCGGAGGCAGTGGTGGCAGTGGGGGCGGTGGCGGCGGCGG Direct Loss 0.981109730642014 0 0.925731 0 prediction 0.962219461284029 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628488 chr17:46628488 synonymous SNV . 0 21 hm5C_associated_SNPs_46975 0 0 1 0 1 Nucleus 0.500231638886879 0 0.851462 0.000463277773758319 hm5C_site_2295 DeepMRMD:0.851462;iRNA_m5C:0.000463277773758319 2296 chr6 110300509 110300509 1 + C T STAD 110300509 + 110300489 110300529 41 GCAGCTGTCGGCTGGGCCACCGGGACTCCTGCTGCCAGCGG GCAGCTGTCGGCTGGGCCACTGGGACTCCTGCTGCCAGCGG Direct Loss 0.981092177280154 0 0.8958171 0 prediction 0.962184354560308 Functional Loss - GPR6 ENSG00000146360 CDS Human protein_coding chr6:110300509 chr6:110300509 nonsynonymous SNV 0.661 0 21 hm5C_associated_SNPs_46976 0 0 0 0 0 unknown 0.500231643921092 0 0.7916342 0.000463287842184856 hm5C_site_2296 DeepMRMD:0.7916342;iRNA_m5C:0.000463287842184856 2297 chr1 101004868 101004868 1 + C T COAD 101004868 + 101004848 101004888 41 GGGGCAGCTACCGCCTGCTACGGGGTGGGCTGCTGGGCCTC GGGGCAGCTACCGCCTGCTATGGGGTGGGCTGCTGGGCCTC Direct Loss 0.981050429167813 0 0.92772985 0 prediction 0.962100858335627 Functional Loss - GPR88 ENSG00000181656 CDS Human protein_coding chr1:101004868 chr1:101004868 nonsynonymous SNV 0.834 1 21 hm5C_associated_SNPs_46977 0 0 0 0 0 exosome 0.500231643921093 0 0.8554597 0.000463287842185522 hm5C_site_2297 DeepMRMD:0.8554597;iRNA_m5C:0.000463287842185522 2298 chr5 140564276 140564276 1 + C T LUAD 140564276 + 140564256 140564296 41 TTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTC TTCGTGGCGGTGCGGCTGTGTAGGAGGAGCAGGGCGGCCTC Direct Loss 0.981030946851037 0 0.9092616 0 prediction 0.962061893702073 Functional Loss - PCDHB16 ENSG00000196963 CDS Human other chr5:140564276 chr5:140564276 synonymous SNV . 0 21 hm5C_associated_SNPs_46978 0 0 0 0 0 Nucleus 0.500231643921217 0 0.8185232 0.000463287842433324 hm5C_site_2298 DeepMRMD:0.8185232;iRNA_m5C:0.000463287842433324 2299 chr8 109482115 109482115 1 + C T LUSC 109482115 + 109482095 109482135 41 GGAAAAATGTGGAGGCCATTCGGGAGCTGAATGAGTATCTG GGAAAAATGTGGAGGCCATTTGGGAGCTGAATGAGTATCTG Direct Loss 0.98101368179923 0 0.9046985 0 prediction 0.962027363598461 Functional Loss - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109482115 chr8:109482115 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_46979 0 0 1 0 2 Cytosol 0.500231643921093 0 0.809397 0.000463287842185078 hm5C_site_2299 DeepMRMD:0.809397;iRNA_m5C:0.000463287842185078 2300 chr3 196439449 196439449 1 + C T rs10855 196439449 + 196439429 196439469 41 GGGCGGCCGCCTGGCTGCTCCTCGGGGCGGCGACCGGGCTC GGGCGGCCGCCTGGCTGCTCTTCGGGGCGGCGACCGGGCTC Direct Loss 0.980998106007384 0 0.9258696 0 prediction 0.961996212014769 Functional Loss - PIGX ENSG00000163964 CDS Human protein_coding chr3:196439449 chr3:196439449 nonsynonymous SNV 0.289 1 21 hm5C_associated_SNPs_46980 0 0 1 0 1 Ribosome 0.50023214076746 0 0.8517392 0.000464281534919841 hm5C_site_2300 DeepMRMD:0.8517392;iRNA_m5C:0.000464281534919841 2301 chr19 41950079 41950079 1 + C A LUAD 41950079 + 41950059 41950099 41 GGAAGCAGGAGGAGGAACACCTGGAGGCCTGCCCAGCCCCA GGAAGCAGGAGGAGGAACACATGGAGGCCTGCCCAGCCCCA Direct Loss 0.980949308428542 0 0.9101789 0 prediction 0.961898616857084 Functional Loss - ERICH4 ENSG00000204978 CDS Human protein_coding chr19:41950079 chr19:41950079 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_46981 0 0 0 0 0 exosome 0.500231644474912 0 0.8203578 0.000463288949823504 hm5C_site_2301 DeepMRMD:0.8203578;iRNA_m5C:0.000463288949823504 2302 chrX 100807961 100807961 1 + C T SKCM 100807961 + 100807941 100807981 41 GTGGCCGCTGGTGTGGTTATCGGGGCTGGTGCCTGCTACTG GTGGCCGCTGGTGTGGTTATTGGGGCTGGTGCCTGCTACTG Direct Loss 0.980917238832404 0 0.9502611 0 prediction 0.961834477664807 Functional Loss - ARMCX1 ENSG00000126947 CDS Human protein_coding chrX:100807961 chrX:100807961 synonymous SNV . 0 21 hm5C_associated_SNPs_46982 0 0 0 0 0 exosome 0.500231643921093 0 0.9005222 0.000463287842185744 hm5C_site_2302 DeepMRMD:0.9005222;iRNA_m5C:0.000463287842185744 2303 chr20 35507482 35507482 1 + C T UCEC 35507482 + 35507462 35507502 41 CCAAGAGTCACCGGCCATCCCTGGAGTCTGGTCTTCTGCAC CCAAGAGTCACCGGCCATCCTTGGAGTCTGGTCTTCTGCAC Direct Loss 0.980911535222132 0 0.40549916 0 prediction 0.961823070444264 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507482 chr20:35507482 synonymous SNV . 0 21 hm5C_associated_SNPs_46983 0 0 0 0 1 membrane 0.50023164392615 0 0 0.000463287852299876 hm5C_site_2303 DeepMRMD:0;iRNA_m5C:0.000463287852299876 2304 chr11 55032734 55032734 1 + C G CESC 55032734 + 55032714 55032754 41 GTTTGCTGTGCTCCAGCTCTCAGGAGCACCGGTATCACAGA GTTTGCTGTGCTCCAGCTCTGAGGAGCACCGGTATCACAGA Direct Loss 0.980906659820384 0 0.9242609 0 prediction 0.961813319640767 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55032734 chr11:55032734 nonsynonymous SNV 0.088 1 21 hm5C_associated_SNPs_46984 0 0 0 0 1 unknown 0.500249535360324 0 0.8485218 0.000499070720648032 hm5C_site_2304 DeepMRMD:0.8485218;iRNA_m5C:0.000499070720648032 2305 chr9 130425628 130425628 1 + C T SKCM 130425628 + 130425608 130425648 41 AGTACCCGGCTGTGCGGTATCGGGGGTAAGGCAGTGCACCA AGTACCCGGCTGTGCGGTATTGGGGGTAAGGCAGTGCACCA Direct Loss 0.980889869901452 0 0.9642918 0 prediction 0.961779739802905 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130425628 chr9:130425628 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_46985 0 0 0 0 1 Cytosol 0.500231706925207 0 0.9285836 0.000463413850413819 hm5C_site_2305 DeepMRMD:0.9285836;iRNA_m5C:0.000463413850413819 2306 chr6 139094938 139094938 1 + C T LUSC 139094938 + 139094918 139094958 41 AGCTGCGGAGGAGCGGGTCCCGGGATGTGACCGGGGCTCTG AGCTGCGGAGGAGCGGGTCCTGGGATGTGACCGGGGCTCTG Direct Loss 0.980870260542162 0 0.9183726 0 prediction 0.961740521084324 Functional Loss - CCDC28A ENSG00000024862 CDS Human protein_coding chr6:139094938 chr6:139094938 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_46986 0 0 1 0 0 Ribosome 0.500231643919069 0 0.8367452 0.000463287838138982 hm5C_site_2306 DeepMRMD:0.8367452;iRNA_m5C:0.000463287838138982 2307 chr9 79635269 79635269 1 + C T rs181219493 79635269 + 79635249 79635289 41 GCGGCGGCGGCCGCGGCAGCCGCGGTGGGCAGCGTGGGACG GCGGCGGCGGCCGCGGCAGCTGCGGTGGGCAGCGTGGGACG Direct Loss 0.980695872517546 0 0.9121125 0 prediction 0.961391745035092 Functional Loss - FOXB2 ENSG00000204612 CDS Human protein_coding chr9:79635269 chr9:79635269 synonymous SNV . 0 21 hm5C_associated_SNPs_46987 0 0 0 0 0 unknown 0.500231643921092 0 0.824225 0.000463287842184856 hm5C_site_2307 DeepMRMD:0.824225;iRNA_m5C:0.000463287842184856 2308 chr12 54379166 54379166 1 + C T COAD 54379166 + 54379146 54379186 41 TCTGGGAGTGACTTCAATTGCGGGGTGATGAGGGGCTGCGG TCTGGGAGTGACTTCAATTGTGGGGTGATGAGGGGCTGCGG Direct Loss 0.980503714995987 0 0.9474348 0 prediction 0.961007429991973 Functional Loss - HOXC10 ENSG00000180818 CDS Human protein_coding chr12:54379166 chr12:54379166 synonymous SNV . 0 21 hm5C_associated_SNPs_46988 0 0 1 0 0 exosome 0.500231643921092 0 0.8948696 0.000463287842184856 hm5C_site_2308 DeepMRMD:0.8948696;iRNA_m5C:0.000463287842184856 2309 chr10 119014801 119014801 1 + C T STAD 119014801 + 119014781 119014821 41 CCTGCAGTGGGCCCCCCCTTCGGGAGTGTGCTCTATGAGTT CCTGCAGTGGGCCCCCCCTTTGGGAGTGTGCTCTATGAGTT Direct Loss 0.980480270665838 0 0.90448153 0 prediction 0.960960541331677 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119014801 chr10:119014801 synonymous SNV . 0 21 hm5C_associated_SNPs_46989 0 0 0 0 2 nucleus 0.500231643920903 0 0.80896306 0.000463287841805382 hm5C_site_2309 DeepMRMD:0.80896306;iRNA_m5C:0.000463287841805382 2310 chr18 22007038 22007038 1 + C G rs73943449 22007038 + 22007018 22007058 41 TCTGGGCCGAAGGCAAAAACCGGGGTTTCGATCCCCACCCT TCTGGGCCGAAGGCAAAAACGGGGGTTTCGATCCCCACCCT Direct Loss 0.980477649808968 0 0.9516746 0 prediction 0.960955299617937 Functional Loss - IMPACT ENSG00000154059 intronic Human protein_coding chr18:22007038 chr18:22007038 . . 0 21 hm5C_associated_SNPs_46990 0 0 1 0 0 Ribosome 0.500231643921092 0 0.9033492 0.000463287842184856 hm5C_site_2310 DeepMRMD:0.9033492;iRNA_m5C:0.000463287842184856 2311 chr21 38390361 38390361 1 + C T SKCM 38390361 + 38390341 38390381 41 TGCCCCAGGAGGTGGGAGGTCGGCAGGAAAATGGCCCAGGG TGCCCCAGGAGGTGGGAGGTTGGCAGGAAAATGGCCCAGGG Direct Loss 0.980409934027372 0 0.89333147 0 prediction 0.960819868054743 Functional Loss - RIPPLY3 ENSG00000183145 CDS Human protein_coding chr21:38390361 chr21:38390361 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_46991 0 0 0 0 0 Nucleus 0.500231736545271 0 0.78666294 0.000463473090541511 hm5C_site_2311 DeepMRMD:0.78666294;iRNA_m5C:0.000463473090541511 2312 chr16 67237481 67237481 1 + C T STAD 67237481 + 67237461 67237501 41 ACTTCATTGCCCCCTCCAAGCGGGAGGTGAGTGTCCGCCAG ACTTCATTGCCCCCTCCAAGTGGGAGGTGAGTGTCCGCCAG Direct Loss 0.980376662245793 0 0.947871 0 prediction 0.960753324491585 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67237481 chr16:67237481 nonsynonymous SNV 0.980 2 21 hm5C_associated_SNPs_46992 0 0 1 0 2 Cytosol 0.500231643921092 0 0.895742 0.000463287842184856 hm5C_site_2312 DeepMRMD:0.895742;iRNA_m5C:0.000463287842184856 2313 chr1 18808470 18808470 1 + C T CESC 18808470 + 18808450 18808490 41 CCTGGGAACAGGGGCTGCCTCGGGAGGCCAAGCCGGTGACA CCTGGGAACAGGGGCTGCCTTGGGAGGCCAAGCCGGTGACA Direct Loss 0.980337133424379 0 0.9414055 0 prediction 0.960674266848758 Functional Loss - KLHDC7A ENSG00000179023 CDS Human protein_coding chr1:18808470 chr1:18808470 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_46993 0 0 0 0 0 Cytosol 0.500231643921092 0 0.882811 0.000463287842184856 hm5C_site_2313 DeepMRMD:0.882811;iRNA_m5C:0.000463287842184856 2314 chr1 78511862 78511862 1 + C A LUSC 78511862 + 78511842 78511882 41 GGCGAGCCGACGGGCGCGGGCGGCGGGAGCCTCTCAGCGTC GGCGAGCCGACGGGCGCGGGAGGCGGGAGCCTCTCAGCGTC Direct Loss 0.980319507261822 0 0.9208216 0 prediction 0.960639014523644 Functional Loss - GIPC2 ENSG00000137960 CDS Human protein_coding chr1:78511862 chr1:78511862 synonymous SNV . 0 21 hm5C_associated_SNPs_46994 0 0 1 0 0 nucleus 0.49988356592505 0 0.8416432 0 hm5C_site_2314 DeepMRMD:0.8416432;iRNA_m5C:0 2315 chr17 54912400 54912400 1 + C A HNSC 54912400 + 54912380 54912420 41 GCGTGTGCGCGCAGCACATTCTGCAGGGCGCCTTCTGCGAC GCGTGTGCGCGCAGCACATTATGCAGGGCGCCTTCTGCGAC Direct Loss 0.980311793154603 0 0.28026792 0 prediction 0.960623586309205 Functional Loss - DGKE ENSG00000153933 CDS Human protein_coding chr17:54912400 chr17:54912400 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_46995 0 0 1 0 0 Ribosome 0.500227497360039 0 0 0.000454994720077373 hm5C_site_2315 DeepMRMD:0;iRNA_m5C:0.000454994720077373 2316 chr19 13873793 13873793 1 + C A rs138278370 13873793 + 13873773 13873813 41 TGTCGCCAGCAGGCTCCTCCCAGGAGGCAGCTGACACCCCC TGTCGCCAGCAGGCTCCTCCAAGGAGGCAGCTGACACCCCC Direct Loss 0.980230113422381 0 0.8885556 0 prediction 0.960460226844762 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13873793 chr19:13873793 nonsynonymous SNV 0.289 0 21 hm5C_associated_SNPs_46996 0 0 0 0 0 Cytosol 0.50023243184955 0 0.7771112 0.000464863699099594 hm5C_site_2316 DeepMRMD:0.7771112;iRNA_m5C:0.000464863699099594 2317 chr7 26678910 26678910 1 + C G rs111516571 26678910 + 26678890 26678930 41 CAAGCCAGGGAGAGGGGCCTCGGGGAAGCCAACCCTGCCTA CAAGCCAGGGAGAGGGGCCTGGGGGAAGCCAACCCTGCCTA Direct Loss 0.980212142420348 0 0.9344511 0 prediction 0.960424284840695 Functional Loss - C7orf71 ENSG00000222004 CDS Human lincRNA chr7:26678910 chr7:26678910 synonymous SNV . 0 21 hm5C_associated_SNPs_46997 0 0 0 0 1 unknown 0.500231643921093 0 0.8689022 0.000463287842186189 hm5C_site_2317 DeepMRMD:0.8689022;iRNA_m5C:0.000463287842186189 2318 chr19 17379674 17379674 1 + C T COAD 17379674 + 17379654 17379694 41 GGAGGAGGAAGAGGAGCACTCGGCAGAGCCTCGGCCCCGCA GGAGGAGGAAGAGGAGCACTTGGCAGAGCCTCGGCCCCGCA Direct Loss 0.98016103459001 0 0.8937466 0 prediction 0.960322069180021 Functional Loss - BABAM1 ENSG00000105393 CDS Human protein_coding chr19:17379674 chr19:17379674 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_46998 0 0 1 0 1 Ribosome 0.500231643921104 0 0.7874932 0.000463287842208171 hm5C_site_2318 DeepMRMD:0.7874932;iRNA_m5C:0.000463287842208171 2319 chr10 97803177 97803177 1 + C A rs557299977 97803177 + 97803157 97803197 41 GGATGCTGACCGTACCCAGGCGGGAGCCGCCGCGCCGCCGC GGATGCTGACCGTACCCAGGAGGGAGCCGCCGCGCCGCCGC Direct Loss 0.980160903185784 0 0.92229015 0 prediction 0.960321806371568 Functional Loss - ENTPD1-AS1 ENSG00000226688 ncRNA_intronic Human antisense chr10:97803177 chr10:97803177 . . 0 21 hm5C_associated_SNPs_46999 0 0 0 0 0 unknown 0.500231643921212 0 0.8445803 0.000463287842424442 hm5C_site_2319 DeepMRMD:0.8445803;iRNA_m5C:0.000463287842424442 2320 chr10 124909209 124909209 1 + C T SARC 124909209 + 124909189 124909229 41 GCCCGCGGGCTCGCCCTCGCCGGGGTCCGAGCGGCCGCGGG GCCCGCGGGCTCGCCCTCGCTGGGGTCCGAGCGGCCGCGGG Direct Loss 0.980119544110691 0 0.90123737 0 prediction 0.960239088221382 Functional Loss - HMX2 ENSG00000188816 CDS Human protein_coding chr10:124909209 chr10:124909209 nonsynonymous SNV 0.110 2 21 hm5C_associated_SNPs_47000 0 0 0 0 0 exosome 0.500231643922256 0 0.80247474 0.000463287844512772 hm5C_site_2320 DeepMRMD:0.80247474;iRNA_m5C:0.000463287844512772 2321 chr9 135866411 135866411 1 + C T LUSC 135866411 + 135866391 135866431 41 AGGTGGACCTGCGGCGGCACCGCGAGAGCCAGCACAATCTC AGGTGGACCTGCGGCGGCACTGCGAGAGCCAGCACAATCTC Direct Loss 0.980108262871606 0 0.42483845 0 prediction 0.960216525743212 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135866411 chr9:135866411 nonsynonymous SNV 0.718 4 21 hm5C_associated_SNPs_47001 0 0 1 0 0 chromatin 0.500231643538791 0 0 0.000463287077582253 hm5C_site_2321 DeepMRMD:0;iRNA_m5C:0.000463287077582253 2322 chr12 5154210 5154210 1 + C T COAD 5154210 + 5154190 5154230 41 GCGCCCGCCCCTGGGGCCAACGGCAGCGGGGTCATGGCCCC GCGCCCGCCCCTGGGGCCAATGGCAGCGGGGTCATGGCCCC Direct Loss 0.980085593684687 0 0.9070554 0 prediction 0.960171187369375 Functional Loss - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5154210 chr12:5154210 synonymous SNV . 0 21 hm5C_associated_SNPs_47002 0 0 0 0 0 exosome 0.50023164411678 0 0.8141108 0.000463288233559345 hm5C_site_2322 DeepMRMD:0.8141108;iRNA_m5C:0.000463288233559345 2323 chr1 42922314 42922314 1 + C T BLCA 42922314 + 42922294 42922334 41 GCTGAGGTTATGGCTCGCTTCGCGGCCAGGCTGGGCGCGCA GCTGAGGTTATGGCTCGCTTTGCGGCCAGGCTGGGCGCGCA Direct Loss 0.980068003213181 0 0.42140725 0 prediction 0.960136006426363 Functional Loss - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922314 chr1:42922314 synonymous SNV . 0 21 hm5C_associated_SNPs_47003 0 0 1 0 0 Ribosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_2323 DeepMRMD:0;iRNA_m5C:0.000463287842184856 2324 chr16 86544587 86544587 1 + C T LUAD 86544587 + 86544567 86544607 41 TGTTCGAGGAGGGCTCCTTTCGGCGGCGGCCGCGCGGCTTC TGTTCGAGGAGGGCTCCTTTTGGCGGCGGCCGCGCGGCTTC Direct Loss 0.980062523814079 0 0.9120133 0 prediction 0.960125047628158 Functional Loss - FOXF1 ENSG00000103241 CDS Human protein_coding chr16:86544587 chr16:86544587 nonsynonymous SNV 0.105 4 21 hm5C_associated_SNPs_47004 0 0 0 0 0 Cytoplasm 0.500231643921092 0 0.8240266 0.000463287842184856 hm5C_site_2324 DeepMRMD:0.8240266;iRNA_m5C:0.000463287842184856 2325 chr7 98951655 98951655 1 + C T rs73710441 98951655 + 98951635 98951675 41 GGCACTGGTGGCTGGGTCCACGGGGTAAGCTTCTCTGCCAG GGCACTGGTGGCTGGGTCCATGGGGTAAGCTTCTCTGCCAG Direct Loss 0.980048768988812 0 0.9114163 0 prediction 0.960097537977624 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98951655 chr7:98951655 synonymous SNV . 0 21 hm5C_associated_SNPs_47005 0 0 1 0 1 Cytosol 0.500231643921092 0 0.8228326 0.000463287842184856 hm5C_site_2325 DeepMRMD:0.8228326;iRNA_m5C:0.000463287842184856 2326 chr9 21802922 21802922 1 + C A rs117769854 21802922 + 21802902 21802942 41 AGGGACTGGGGCGCGGCACTCGGGACTCACTTGCCGCGCGA AGGGACTGGGGCGCGGCACTAGGGACTCACTTGCCGCGCGA Direct Loss 0.980045199774626 0 0.9543278 0 prediction 0.960090399549252 Functional Loss - MTAP ENSG00000099810 CDS Human protein_coding chr9:21802922 chr9:21802922 synonymous SNV . 0 21 hm5C_associated_SNPs_47006 0 0 1 0 0 Ribosome 0.500231643921092 0 0.9086556 0.000463287842184856 hm5C_site_2326 DeepMRMD:0.9086556;iRNA_m5C:0.000463287842184856 2327 chr5 140431241 140431241 1 + C T COAD 140431241 + 140431221 140431261 41 GTAGGGAAGCTGGCTGCGCGCGGGGCGCGGCTGGTTTCCGA GTAGGGAAGCTGGCTGCGCGTGGGGCGCGGCTGGTTTCCGA Direct Loss 0.980032051842912 0 0.92763054 0 prediction 0.960064103685823 Functional Loss - PCDHB1 ENSG00000171815 CDS Human protein_coding chr5:140431241 chr5:140431241 synonymous SNV . 0 21 hm5C_associated_SNPs_47007 0 0 0 0 0 unknown 0.500231643922228 0 0.85526108 0.000463287844455929 hm5C_site_2327 DeepMRMD:0.85526108;iRNA_m5C:0.000463287844455929 2328 chr9 12694344 12694344 1 + C A UCEC 12694344 + 12694324 12694364 41 TGTGGGACGTGCCGTCCTGGCTGGAGAGGAGCTGCCTGTGA TGTGGGACGTGCCGTCCTGGATGGAGAGGAGCTGCCTGTGA Direct Loss 0.979989330504212 0 0.3078984 0 prediction 0.959978661008424 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12694344 chr9:12694344 synonymous SNV . 0 21 hm5C_associated_SNPs_47008 0 0 0 0 1 exosome 0.50023166724044 0 0 0.000463334480879984 hm5C_site_2328 DeepMRMD:0;iRNA_m5C:0.000463334480879984 2329 chr2 103121867 103121867 1 + C T SKCM 103121867 + 103121847 103121887 41 TGTCCACTGTGGGCAAGAATCACGAGTGGAACTGGGCCTTC TGTCCACTGTGGGCAAGAATTACGAGTGGAACTGGGCCTTC Direct Loss 0.979930329864953 0 0.54390645 0 prediction 0.959860659729906 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103121867 chr2:103121867 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_47009 0 0 0 0 1 exosome 0.500231643921077 0 0.0878129000000001 0.000463287842154214 hm5C_site_2329 DeepMRMD:0.0878129000000001;iRNA_m5C:0.000463287842154214 2330 chr4 94750827 94750827 1 + C A LUAD 94750827 + 94750807 94750847 41 TATGAAGGGGGCGCGGGCAACGCGACCGCAGCTGGGGCTCA TATGAAGGGGGCGCGGGCAAAGCGACCGCAGCTGGGGCTCA Direct Loss 0.979925045003627 0 0.7484698 0 prediction 0.959850090007253 Functional Loss - ATOH1 ENSG00000172238 CDS Human protein_coding chr4:94750827 chr4:94750827 nonsynonymous SNV 0.002 2 21 hm5C_associated_SNPs_47010 0 0 0 0 0 unknown 0.500231643921092 0 0.4969396 0.000463287842184856 hm5C_site_2330 DeepMRMD:0.4969396;iRNA_m5C:0.000463287842184856 2331 chr13 28494600 28494600 1 + C A LUSC 28494600 + 28494580 28494620 41 AGGGAGCCGAGCCGGGCGTCCTGGAGGAGCCCAACCGCGTC AGGGAGCCGAGCCGGGCGTCATGGAGGAGCCCAACCGCGTC Direct Loss 0.97990857676243 0 0.91268694 0 prediction 0.959817153524861 Functional Loss - PDX1 ENSG00000139515 CDS Human protein_coding chr13:28494600 chr13:28494600 nonsynonymous SNV 0.133 1 21 hm5C_associated_SNPs_47011 0 0 1 0 1 exosome 0.500231643919587 0 0.82537388 0.000463287839173931 hm5C_site_2331 DeepMRMD:0.82537388;iRNA_m5C:0.000463287839173931 2332 chr11 5411355 5411355 1 + C A SKCM 5411355 + 5411335 5411375 41 CAGTAGCAGGCCTGGCCTCCCAAGAGGAGCAGCGCCGTGCC CAGTAGCAGGCCTGGCCTCCAAAGAGGAGCAGCGCCGTGCC Direct Loss 0.979883806398054 0 0.82179725 0 prediction 0.959767612796109 Functional Loss - OR51M1 ENSG00000184698 CDS Human protein_coding chr11:5411355 chr11:5411355 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_47012 0 0 0 0 0 nucleoplasm 0.500231643921092 0 0.6435945 0.000463287842184856 hm5C_site_2332 DeepMRMD:0.6435945;iRNA_m5C:0.000463287842184856 2333 chr12 111375074 111375074 1 + C A UCEC 111375074 + 111375054 111375094 41 CCAGCAGGGGGCGGTGCTACCTCGGCTCCGCGCAGCCACGG CCAGCAGGGGGCGGTGCTACATCGGCTCCGCGCAGCCACGG Direct Loss 0.979882506082582 0 0.28431112 0 prediction 0.959765012165164 Functional Loss - LINC01405 ENSG00000185847 ncRNA_exonic Human lincRNA chr12:111375074 chr12:111375074 . . 0 21 hm5C_associated_SNPs_47013 0 0 0 0 1 unknown 0.500231643921092 0 0 0.000463287842184856 hm5C_site_2333 DeepMRMD:0;iRNA_m5C:0.000463287842184856 2334 chr2 39944451 39944451 1 + C G rs182711713 39944451 + 39944431 39944471 41 GAGGGGAACAGCGCGGAGTTCAGGAGTCCAAGCACAAAGCG GAGGGGAACAGCGCGGAGTTGAGGAGTCCAAGCACAAAGCG Direct Loss 0.979879590088077 0 0.88381904 0 prediction 0.959759180176154 Functional Loss - TMEM178A ENSG00000152154 UTR3 Human protein_coding chr2:39944451 chr2:39944451 . . 0 21 hm5C_associated_SNPs_47014 0 0 0 2 0 exosome 0.500231643921094 0 0.76763808 0.000463287842187965 hm5C_site_2334 DeepMRMD:0.76763808;iRNA_m5C:0.000463287842187965 2335 chr19 45593559 45593559 1 + C T HNSC 45593559 + 45593539 45593579 41 AGCGGGCACGAGCCGCCCTTCGGGAGCGTTACCTCCGCAGC AGCGGGCACGAGCCGCCCTTTGGGAGCGTTACCTCCGCAGC Direct Loss 0.9798779639916 0 0.9302945 0 prediction 0.9597559279832 Functional Loss - GEMIN7 ENSG00000142252 CDS Human protein_coding chr19:45593559 chr19:45593559 nonsynonymous SNV 0.701 4 21 hm5C_associated_SNPs_47015 0 0 1 0 0 Ribosome 0.500231643921093 0 0.860589 0.000463287842185078 hm5C_site_2335 DeepMRMD:0.860589;iRNA_m5C:0.000463287842185078 2336 chr22 40801207 40801207 1 + C T rs150525363 40801207 + 40801187 40801227 41 TTCGCCAGCATGGGTAGCATCGGGGTGCCCCGCCTGCGCAG TTCGCCAGCATGGGTAGCATTGGGGTGCCCCGCCTGCGCAG Direct Loss 0.979864138533346 0 0.9704379 0 prediction 0.959728277066691 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40801207 chr22:40801207 synonymous SNV . 0 21 hm5C_associated_SNPs_47016 0 0 1 0 2 Cytosol 0.500231643921092 0 0.9408758 0.000463287842184856 hm5C_site_2336 DeepMRMD:0.9408758;iRNA_m5C:0.000463287842184856 2337 chr19 10224918 10224918 1 + C A LUSC 10224918 + 10224898 10224938 41 AGCGTATAGCCTGGTGCTGGCGGGGTTGGGCTGCGGCCTGC AGCGTATAGCCTGGTGCTGGAGGGGTTGGGCTGCGGCCTGC Direct Loss 0.979846499708329 0 0.9281094 0 prediction 0.959692999416659 Functional Loss - P2RY11;PPAN-P2RY11 ENSG00000130810;ENSG00000243207;ENSG00000244165 CDS Human other chr19:10224918 chr19:10224918 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_47017 0 0 1 0 0 unknown 0.500231643921026 0 0.8562188 0.000463287842051185 hm5C_site_2337 DeepMRMD:0.8562188;iRNA_m5C:0.000463287842051185 2338 chr16 1544556 1544556 1 + C T rs569479774 1544556 + 1544536 1544576 41 AGCTGTGGGCCAGCTTCTTCCTGGAGGGCCCGGCGGACCAA AGCTGTGGGCCAGCTTCTTCTTGGAGGGCCCGGCGGACCAA Direct Loss 0.979832765562228 0 0.8797982 0 prediction 0.959665531124455 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1544556 chr16:1544556 synonymous SNV . 0 21 hm5C_associated_SNPs_47018 0 0 1 0 1 Cytosol 0.500231643921092 0 0.7595964 0.000463287842184856 hm5C_site_2338 DeepMRMD:0.7595964;iRNA_m5C:0.000463287842184856 2339 chr3 186299202 186299202 1 + C T COAD 186299202 + 186299182 186299222 41 CAAGGCAGGCTCCTGGCAAACGGAAGTGCAATTGTCGGCAA CAAGGCAGGCTCCTGGCAAATGGAAGTGCAATTGTCGGCAA Direct Loss 0.979815674035748 0 0.5550258 0 prediction 0.959631348071497 Functional Loss - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186299202 chr3:186299202 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_47019 0 0 1 0 1 Ribosome 0.50023170689421 0 0.1100516 0.000463413788420075 hm5C_site_2339 DeepMRMD:0.1100516;iRNA_m5C:0.000463413788420075 2340 chr5 170736513 170736513 1 + C A KIRC 170736513 + 170736493 170736533 41 AGCTACCTGGGAGGGCCCCCCGGGGGCCGTCCGGGCGCCAC AGCTACCTGGGAGGGCCCCCAGGGGGCCGTCCGGGCGCCAC Direct Loss 0.9797132311503 0 0.93607247 0 prediction 0.9594264623006 Functional Loss - TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736513 chr5:170736513 synonymous SNV . 0 21 hm5C_associated_SNPs_47020 0 0 0 0 0 exosome 0.500231644264455 0 0.87214494 0.000463288528909978 hm5C_site_2340 DeepMRMD:0.87214494;iRNA_m5C:0.000463288528909978 2341 chr1 152882808 152882808 1 + C G rs7520592 152882808 + 152882788 152882828 41 AGCTGAAGCACCCGGAGCAGCAGGAGGGGCAGCTGGAGCTC AGCTGAAGCACCCGGAGCAGGAGGAGGGGCAGCTGGAGCTC Direct Loss 0.979671136072185 0 0.89351225 0 prediction 0.95934227214437 Functional Loss - IVL ENSG00000163207 CDS Human protein_coding chr1:152882808 chr1:152882808 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_47021 0 0 0 0 0 unknown 0.500231643845347 0 0.7870245 0.000463287690693592 hm5C_site_2341 DeepMRMD:0.7870245;iRNA_m5C:0.000463287690693592 2342 chr19 1434829 1434829 1 + C T BLCA 1434829 + 1434809 1434849 41 GGGTCCCTCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCG GGGTCCCTCCGTGCCAGGGTTGGGGGGCCCCCCCGCCGGCG Direct Loss 0.979644076165926 0 0.96609354 0 prediction 0.959288152331851 Functional Loss - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434829 chr19:1434829 nonsynonymous SNV 0.955 1 21 hm5C_associated_SNPs_47022 0 0 1 0 1 chromatin 0.500231729385819 0 0.93218708 0.000463458771638114 hm5C_site_2342 DeepMRMD:0.93218708;iRNA_m5C:0.000463458771638114 2343 chr1 248028136 248028136 1 + C T PAAD 248028136 + 248028116 248028156 41 GAGCGACGCTGCAGAGACTGCGGGAGAGCAAGAGCCGGCTG GAGCGACGCTGCAGAGACTGTGGGAGAGCAAGAGCCGGCTG Direct Loss 0.979631944527364 0 0.9154866 0 prediction 0.959263889054729 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248028136 chr1:248028136 nonsynonymous SNV 0.103 2 21 hm5C_associated_SNPs_47023 0 0 1 0 0 Cytosol 0.500231656001695 0 0.8309732 0.000463312003389449 hm5C_site_2343 DeepMRMD:0.8309732;iRNA_m5C:0.000463312003389449 2344 chr16 19079036 19079036 1 + C G rs529955941 19079036 + 19079016 19079056 41 CCGCCTTTGGCGGCTGCGCCCGGGGGCCCGGCGGTCCCTCT CCGCCTTTGGCGGCTGCGCCGGGGGGCCCGGCGGTCCCTCT Direct Loss 0.979596635722276 0 0.93233323 0 prediction 0.959193271444553 Functional Loss - COQ7 ENSG00000167186 CDS Human protein_coding chr16:19079036 chr16:19079036 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47024 0 0 1 0 1 Ribosome 0.500231643959902 0 0.86466646 0.000463287919803212 hm5C_site_2344 DeepMRMD:0.86466646;iRNA_m5C:0.000463287919803212 2345 chr16 29825686 29825686 1 + C T CESC 29825686 + 29825666 29825706 41 CTGCAGCAGGGGGACGTGGACGGGGCCCAGCGTCTGGGCCG CTGCAGCAGGGGGACGTGGATGGGGCCCAGCGTCTGGGCCG Direct Loss 0.979578574175664 0 0.9137206 0 prediction 0.959157148351329 Functional Loss - PRRT2 ENSG00000167371 CDS Human protein_coding chr16:29825686 chr16:29825686 synonymous SNV . 0 21 hm5C_associated_SNPs_47025 1 0 0 0 1 nucleoplasm 0.500231643921092 0 0.8274412 0.000463287842184856 hm5C_site_2345 DeepMRMD:0.8274412;iRNA_m5C:0.000463287842184856 not specified not specified 2346 chr14 102027895 102027895 1 + C T UCEC 102027895 + 102027875 102027915 41 CGAGGGGTCCCAGGGGGCTTCGGGGCCTGCAGCCACCATGC CGAGGGGTCCCAGGGGGCTTTGGGGCCTGCAGCCACCATGC Direct Loss 0.979564779104739 0 0.9365457 0 prediction 0.959129558209478 Functional Loss - DIO3 ENSG00000197406 CDS Human protein_coding chr14:102027895 chr14:102027895 unknown 0.960 0 21 hm5C_associated_SNPs_47026 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8730914 0.000463287842184856 hm5C_site_2346 DeepMRMD:0.8730914;iRNA_m5C:0.000463287842184856 2347 chr1 228346668 228346668 1 + C A BLCA 228346668 + 228346648 228346688 41 GCTACCTCTGCGGGCACTGTCGGGGAGCAGGGCCGGCCCGG GCTACCTCTGCGGGCACTGTAGGGGAGCAGGGCCGGCCCGG Direct Loss 0.979558886440462 0 0.9506788 0 prediction 0.959117772880925 Functional Loss - GJC2 ENSG00000198835 CDS Human protein_coding chr1:228346668 chr1:228346668 synonymous SNV . 0 21 hm5C_associated_SNPs_47027 0 0 0 0 0 chromatin 0.500231643921092 0 0.9013576 0.000463287842184856 hm5C_site_2347 DeepMRMD:0.9013576;iRNA_m5C:0.000463287842184856 2348 chr1 22987455 22987455 1 + C T UCEC 22987455 + 22987435 22987475 41 CCCAGGCCCCAAAGGTGAATCGGGAGACTACAAGGCCACCC CCCAGGCCCCAAAGGTGAATTGGGAGACTACAAGGCCACCC Direct Loss 0.97954236003056 0 0.9290838 0 prediction 0.959084720061119 Functional Loss - C1QB ENSG00000173369 CDS Human protein_coding chr1:22987455 chr1:22987455 nonsynonymous SNV 0.275 3 21 hm5C_associated_SNPs_47028 0 0 0 0 0 exosome 0.500231643923106 0 0.8581676 0.000463287846211857 hm5C_site_2348 DeepMRMD:0.8581676;iRNA_m5C:0.000463287846211857 2349 chr12 58014803 58014803 1 + C T UCEC 58014803 + 58014783 58014823 41 GTGGGGAATCTGAGCGGAATCGAGAAGGAGCAGCTGGACGC GTGGGGAATCTGAGCGGAATTGAGAAGGAGCAGCTGGACGC Direct Loss 0.979541186107107 0 0.88353765 0 prediction 0.959082372214213 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58014803 chr12:58014803 synonymous SNV . 0 21 hm5C_associated_SNPs_47029 0 0 1 0 2 chromatin 0.50023164392116 0 0.7670753 0.000463287842319193 hm5C_site_2349 DeepMRMD:0.7670753;iRNA_m5C:0.000463287842319193 2350 chr6 144508147 144508147 1 + C T SKCM 144508147 + 144508127 144508167 41 CTCGGCAGTGGCGCGCATTTCGCGGGCGCAGTACAACGCGC CTCGGCAGTGGCGCGCATTTTGCGGGCGCAGTACAACGCGC Direct Loss 0.979528629243667 0 0.95111597 0 prediction 0.959057258487333 Functional Loss - STX11 ENSG00000135604 CDS Human protein_coding chr6:144508147 chr6:144508147 nonsynonymous SNV 0.271 1 21 hm5C_associated_SNPs_47030 0 0 0 0 0 Nucleus 0.500231712545431 0 0.90223194 0.000463425090862613 hm5C_site_2350 DeepMRMD:0.90223194;iRNA_m5C:0.000463425090862613 2351 chr1 1848649 1848649 1 + C T rs200134594 1848649 + 1848629 1848669 41 GTAGGTGCAGCTGCCGCAGCCGGGGGAGGCCTGCCCGGGAA GTAGGTGCAGCTGCCGCAGCTGGGGGAGGCCTGCCCGGGAA Direct Loss 0.979502233618866 0 0.94129074 0 prediction 0.959004467237733 Functional Loss - CALML6 ENSG00000169885 UTR3 Human protein_coding chr1:1848649 chr1:1848649 . . 0 21 hm5C_associated_SNPs_47031 0 0 0 0 0 exosome 0.500231643921092 0 0.88258148 0.000463287842184856 hm5C_site_2351 DeepMRMD:0.88258148;iRNA_m5C:0.000463287842184856 2352 chr2 232262919 232262919 1 + C T rs555697041 232262919 + 232262899 232262939 41 TGGGGCCGCGAGCGGCAGTCCGCGGGTGGGGGCCGAGGCGC TGGGGCCGCGAGCGGCAGTCTGCGGGTGGGGGCCGAGGCGC Direct Loss 0.97948338155825 0 0.91467226 0 prediction 0.958966763116501 Functional Loss - B3GNT7 ENSG00000156966 CDS Human protein_coding chr2:232262919 chr2:232262919 synonymous SNV . 0 21 hm5C_associated_SNPs_47032 0 0 0 0 0 exosome 0.500231643921092 0 0.82934452 0.000463287842184856 hm5C_site_2352 DeepMRMD:0.82934452;iRNA_m5C:0.000463287842184856 2353 chr15 29409706 29409706 1 + C T rs62007245 29409706 + 29409686 29409726 41 CCTCCGAGGGACGCGGCTCCCGGGGCAGGGCAGCCGTCACC CCTCCGAGGGACGCGGCTCCTGGGGCAGGGCAGCCGTCACC Direct Loss 0.979445711709408 0 0.92957294 0 prediction 0.958891423418816 Functional Loss - APBA2 ENSG00000034053 UTR3 Human protein_coding chr15:29409706 chr15:29409706 . . 0 21 hm5C_associated_SNPs_47033 0 0 1 0 0 Cytosol 0.500231643921092 0 0.85914588 0.000463287842184856 hm5C_site_2353 DeepMRMD:0.85914588;iRNA_m5C:0.000463287842184856 2354 chr6 28227220 28227220 1 + C T SKCM 28227220 + 28227200 28227240 41 GAGAAGGCGACGCAGCTCCTCGGGGAGCCCACCATCCCCGC GAGAAGGCGACGCAGCTCCTTGGGGAGCCCACCATCCCCGC Direct Loss 0.979423646097721 0 0.94117296 0 prediction 0.958847292195442 Functional Loss - NKAPL ENSG00000189134 CDS Human protein_coding chr6:28227220 chr6:28227220 nonsynonymous SNV 0.030 1 21 hm5C_associated_SNPs_47034 0 0 0 0 0 exosome 0.500231643921093 0 0.88234592 0.000463287842185078 hm5C_site_2354 DeepMRMD:0.88234592;iRNA_m5C:0.000463287842185078 2355 chr5 23527469 23527469 1 + C A rs112501567 23527469 + 23527449 23527489 41 GGGAGTGTGGGCGGGGCTTTCGCGATAAGTCACACCTCCTC GGGAGTGTGGGCGGGGCTTTAGCGATAAGTCACACCTCCTC Direct Loss 0.979383753495843 0 0.9317788 0 prediction 0.958767506991685 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23527469 chr5:23527469 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_47035 0 0 1 0 0 unknown 0.500231643921092 0 0.8635576 0.000463287842184856 hm5C_site_2355 DeepMRMD:0.8635576;iRNA_m5C:0.000463287842184856 2356 chr20 21695332 21695332 1 + C A LUAD 21695332 + 21695312 21695352 41 GGAGGAAGCCAGTGCCGGCCCGCGGGGTGCACGCCCAGCCA GGAGGAAGCCAGTGCCGGCCAGCGGGGTGCACGCCCAGCCA Direct Loss 0.979343557885831 0 0.89707255 0 prediction 0.958687115771661 Functional Loss - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21695332 chr20:21695332 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_47036 0 0 0 0 0 unknown 0.500231643921092 0 0.7941451 0.000463287842184856 hm5C_site_2356 DeepMRMD:0.7941451;iRNA_m5C:0.000463287842184856 2357 chr1 36752451 36752451 1 + C A LGG 36752451 + 36752431 36752471 41 GGCCAAGGAGCAGACATTCTCTGGAGGCACCTCTCAAGATA GGCCAAGGAGCAGACATTCTATGGAGGCACCTCTCAAGATA Direct Loss 0.979315053411353 0 0.86678374 0 prediction 0.958630106822706 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36752451 chr1:36752451 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_47037 0 0 1 0 0 Nucleus 0.500231643921092 0 0.73356748 0.000463287842184856 hm5C_site_2357 DeepMRMD:0.73356748;iRNA_m5C:0.000463287842184856 2358 chr20 61450608 61450608 1 + C T SKCM 61450608 + 61450588 61450628 41 CCCAGGAAAGCCGGGGAAACCAGGAGAGGCTGGGCTGCCGG CCCAGGAAAGCCGGGGAAACTAGGAGAGGCTGGGCTGCCGG Direct Loss 0.979307502886258 0 0.9299726 0 prediction 0.958615005772517 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450608 chr20:61450608 nonsynonymous SNV 0.888 2 21 hm5C_associated_SNPs_47038 0 0 1 0 2 Cytosol 0.500231643921092 0 0.8599452 0.000463287842184856 hm5C_site_2358 DeepMRMD:0.8599452;iRNA_m5C:0.000463287842184856 2359 chr17 21075445 21075445 1 + C T LUSC 21075445 + 21075425 21075465 41 CGGCTGCTGCAGTGGGTGCGCGGGAAGGCCTACCTGCGGAA CGGCTGCTGCAGTGGGTGCGTGGGAAGGCCTACCTGCGGAA Direct Loss 0.979299453591796 0 0.88836193 0 prediction 0.958598907183592 Functional Loss - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21075445 chr17:21075445 synonymous SNV . 0 21 hm5C_associated_SNPs_47039 0 0 1 0 1 Endoplasmic reticulum 0.500231645166105 0 0.77672386 0.000463290332210375 hm5C_site_2359 DeepMRMD:0.77672386;iRNA_m5C:0.000463290332210375 2360 chr1 201952238 201952238 1 + C G MESO 201952238 + 201952218 201952258 41 TACCGCGTCGGGGAGGGACCCGGGGTGAGTGCGCCCCAGAC TACCGCGTCGGGGAGGGACCGGGGGTGAGTGCGCCCCAGAC Direct Loss 0.979259666462971 0 0.96095574 0 prediction 0.958519332925942 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201952238 chr1:201952238 synonymous SNV . 0 21 hm5C_associated_SNPs_47040 0 0 1 0 1 Ribosome 0.500231643921092 0 0.92191148 0.000463287842184856 hm5C_site_2360 DeepMRMD:0.92191148;iRNA_m5C:0.000463287842184856 2361 chr12 53497419 53497419 1 + C T ACC 53497419 + 53497399 53497439 41 CAGAAGGGCTGGGAGGGGAGCGGGAGCGCCAACCCTGTGGA CAGAAGGGCTGGGAGGGGAGTGGGAGCGCCAACCCTGTGGA Direct Loss 0.979251661933163 0 0.92067736 0 prediction 0.958503323866325 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53497419 chr12:53497419 nonsynonymous SNV 0.038 0 21 hm5C_associated_SNPs_47041 0 0 1 0 1 cytosol 0.500231644907222 0 0.84135472 0.000463289814443657 hm5C_site_2361 DeepMRMD:0.84135472;iRNA_m5C:0.000463289814443657 2362 chr1 112298218 112298218 1 + C A rs370244042 112298218 + 112298198 112298238 41 CGGCGAGAGGGCGGTGGCGCCGGGGGCACGGCTGGGCGGCT CGGCGAGAGGGCGGTGGCGCAGGGGGCACGGCTGGGCGGCT Direct Loss 0.979218757841726 0 0.91525006 0 prediction 0.958437515683452 Functional Loss - DDX20 ENSG00000064703 UTR5 Human protein_coding chr1:112298218 chr1:112298218 . . 0 21 hm5C_associated_SNPs_47042 0 0 0 0 0 Ribosome 0.50023164392109 0 0.83050012 0.000463287842180859 hm5C_site_2362 DeepMRMD:0.83050012;iRNA_m5C:0.000463287842180859 2363 chr12 65564324 65564324 1 + C T rs183253527 65564324 + 65564304 65564344 41 GTTCAGGGAGGGGGAGGACTCGCGATGAATGACAGGGCGGC GTTCAGGGAGGGGGAGGACTTGCGATGAATGACAGGGCGGC Direct Loss 0.979205880967971 0 0.8868239 0 prediction 0.958411761935942 Functional Loss - LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65564324 chr12:65564324 synonymous SNV . 0 21 hm5C_associated_SNPs_47043 1 0 1 0 0 Endoplasmic reticulum 0.500231643923527 0 0.7736478 0.000463287847054072 hm5C_site_2363 DeepMRMD:0.7736478;iRNA_m5C:0.000463287847054072 Dermatofibrosis lenticularis disseminata Dermatofibrosis lenticularis disseminata 2364 chr19 52954474 52954474 1 + C T rs373983368 52954474 + 52954454 52954494 41 GCCTGGGACGCGCGCGTCTTCAGGGTGGAAGCCTGGCGCGC GCCTGGGACGCGCGCGTCTTTAGGGTGGAAGCCTGGCGCGC Direct Loss 0.979152545235025 0 0.9201597 0 prediction 0.958305090470051 Functional Loss - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52954474 chr19:52954474 synonymous SNV . 0 21 hm5C_associated_SNPs_47044 0 0 0 0 1 exosome 0.500230798223126 0 0.8403194 0.000461596446251544 hm5C_site_2364 DeepMRMD:0.8403194;iRNA_m5C:0.000461596446251544 2365 chr14 74823625 74823625 1 + C A LUAD 74823625 + 74823605 74823645 41 CCTTCACTCTCCCCACCTGCCGGGAGGGAGGCCCTGGCCTC CCTTCACTCTCCCCACCTGCAGGGAGGGAGGCCCTGGCCTC Direct Loss 0.979083409319252 0 0.92181695 0 prediction 0.958166818638504 Functional Loss - VRTN ENSG00000133980 CDS Human protein_coding chr14:74823625 chr14:74823625 synonymous SNV . 0 21 hm5C_associated_SNPs_47045 0 0 0 0 0 unknown 0.500231643921092 0 0.8436339 0.000463287842184856 hm5C_site_2365 DeepMRMD:0.8436339;iRNA_m5C:0.000463287842184856 2366 chr12 31812123 31812123 1 + C A rs534923638 31812123 + 31812103 31812143 41 GCTGGGAAAAAGGGCGGGGCCGCGAGGGGCCGCCGTCCGTC GCTGGGAAAAAGGGCGGGGCAGCGAGGGGCCGCCGTCCGTC Direct Loss 0.979021584074242 0 0.8740796 0 prediction 0.958043168148484 Functional Loss - ETFBKMT ENSG00000139160 UTR5 Human protein_coding chr12:31812123 chr12:31812123 . . 0 21 hm5C_associated_SNPs_47046 0 0 0 0 0 nucleoplasm 0.500231643922336 0 0.7481592 0.000463287844672422 hm5C_site_2366 DeepMRMD:0.7481592;iRNA_m5C:0.000463287844672422 2367 chr1 161696531 161696531 1 + C A rs202042884 161696531 + 161696511 161696551 41 TGCTGAGGGTGATGGGTCCGCGGGAGGCCCGCGGCGCGGCG TGCTGAGGGTGATGGGTCCGAGGGAGGCCCGCGGCGCGGCG Direct Loss 0.979018578652839 0 0.9040906 0 prediction 0.958037157305678 Functional Loss - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161696531 chr1:161696531 synonymous SNV . 0 21 hm5C_associated_SNPs_47047 0 0 0 0 1 Endoplasmic reticulum 0.500231551329623 0 0.8081812 0.000463102659246983 hm5C_site_2367 DeepMRMD:0.8081812;iRNA_m5C:0.000463102659246983 2368 chr16 28943738 28943738 1 + C T SKCM 28943738 + 28943718 28943758 41 CTCAGCAGCTGACCTGGTCTCGGGAGTCCCCGCTTAAACCC CTCAGCAGCTGACCTGGTCTTGGGAGTCCCCGCTTAAACCC Direct Loss 0.979016357808389 0 0.9625019 0 prediction 0.958032715616778 Functional Loss - CD19 ENSG00000177455 CDS Human protein_coding chr16:28943738 chr16:28943738 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_47048 0 0 0 0 1 exosome 0.500231643921092 0 0.9250038 0.000463287842184856 hm5C_site_2368 DeepMRMD:0.9250038;iRNA_m5C:0.000463287842184856 2369 chr19 50386145 50386145 1 + C T SKCM 50386145 + 50386125 50386165 41 GCTGAAGAACCGGATCTTCTCGGGGGTGAGTGCCAGGACAG GCTGAAGAACCGGATCTTCTTGGGGGTGAGTGCCAGGACAG Direct Loss 0.978996271806404 0 0.9524003 0 prediction 0.957992543612808 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386145 chr19:50386145 nonsynonymous SNV 0.434 1 21 hm5C_associated_SNPs_47049 0 0 1 0 2 membrane 0.500231643921109 0 0.9048006 0.000463287842218829 hm5C_site_2369 DeepMRMD:0.9048006;iRNA_m5C:0.000463287842218829 2370 chr20 62521229 62521229 1 + C T COAD 62521229 + 62521209 62521249 41 GTTGTGGGTGACAGAGAGAACGGCAGTGACAACCTCCCTTC GTTGTGGGTGACAGAGAGAATGGCAGTGACAACCTCCCTTC Direct Loss 0.97898914017372 0 0.44184285 0 prediction 0.95797828034744 Functional Loss - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62521229 chr20:62521229 synonymous SNV 0.971 0 21 hm5C_associated_SNPs_47050 0 0 1 0 1 Ribosome 0.50023164392113 0 0 0.000463287842260129 hm5C_site_2370 DeepMRMD:0;iRNA_m5C:0.000463287842260129 2371 chr5 170883681 170883681 1 + C T LUSC 170883681 + 170883661 170883701 41 CGCGGAAGGGCCCCAAGACCCGGGAGAACCAGCAGGACGTG CGCGGAAGGGCCCCAAGACCTGGGAGAACCAGCAGGACGTG Direct Loss 0.978939795031835 0 0.900341 0 prediction 0.957879590063671 Functional Loss - FGF18 ENSG00000156427 CDS Human protein_coding chr5:170883681 chr5:170883681 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_47051 0 0 1 0 0 nucleolus 0.500231639141673 0 0.800682 0.000463278283345359 hm5C_site_2371 DeepMRMD:0.800682;iRNA_m5C:0.000463278283345359 2372 chr1 247752366 247752366 1 + C T SARC 247752366 + 247752346 247752386 41 TTGAGGATTAAGTCAGCTACCAGGAGACAGAAAGCATTCGG TTGAGGATTAAGTCAGCTACTAGGAGACAGAAAGCATTCGG Direct Loss 0.978908304038363 0 0.91781104 0 prediction 0.957816608076726 Functional Loss - OR2G2 ENSG00000177489 CDS Human protein_coding chr1:247752366 chr1:247752366 synonymous SNV . 0 21 hm5C_associated_SNPs_47052 0 0 0 0 0 unknown 0.500232433541842 0 0.83562208 0.00046486708368465 hm5C_site_2372 DeepMRMD:0.83562208;iRNA_m5C:0.00046486708368465 2373 chr3 142840733 142840733 1 + C A UCEC 142840733 + 142840713 142840753 41 GCCTACAGGTGGTGCGCAGCCGAGACCCGCGAGCTCACCGC GCCTACAGGTGGTGCGCAGCAGAGACCCGCGAGCTCACCGC Direct Loss 0.978857011443898 0 0.4690698 0 prediction 0.957714022887796 Functional Loss - CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840733 chr3:142840733 synonymous SNV . 0 21 hm5C_associated_SNPs_47053 0 0 0 0 0 cytosol 0.500231643827042 0 0 0.0004632876540831 hm5C_site_2373 DeepMRMD:0;iRNA_m5C:0.0004632876540831 2374 chr17 6929827 6929827 1 + C T GBM 6929827 + 6929807 6929847 41 GGCTGTGGCAGGGTGCTCATCGGGGCTGGACTCCTTGGTTC GGCTGTGGCAGGGTGCTCATTGGGGCTGGACTCCTTGGTTC Direct Loss 0.97878206617716 0 0.9520149 0 prediction 0.95756413235432 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6929827 chr17:6929827 nonsynonymous SNV 0.334 0 21 hm5C_associated_SNPs_47054 0 0 0 0 1 Endoplasmic reticulum 0.500231498392241 0 0.9040298 0.000462996784481584 hm5C_site_2374 DeepMRMD:0.9040298;iRNA_m5C:0.000462996784481584 2375 chr12 107349600 107349600 1 + C T rs554325297 107349600 + 107349580 107349620 41 ACTGGAGCCGCGGGAGGAGGCGGGAGCTGAGGAGGCGGCGG ACTGGAGCCGCGGGAGGAGGTGGGAGCTGAGGAGGCGGCGG Direct Loss 0.978778871920198 0 0.92836416 0 prediction 0.957557743840397 Functional Loss - TMEM263 ENSG00000151135 UTR5 Human protein_coding chr12:107349600 chr12:107349600 . . 0 21 hm5C_associated_SNPs_47055 0 0 0 0 0 Ribosome 0.500231643921004 0 0.85672832 0.000463287842008331 hm5C_site_2375 DeepMRMD:0.85672832;iRNA_m5C:0.000463287842008331 2376 chr20 35507522 35507522 1 + C A CESC 35507522 + 35507502 35507542 41 CGTCAAGGGACGGTTTCAGCCTGCAGAGCCTGTACCGGCGG CGTCAAGGGACGGTTTCAGCATGCAGAGCCTGTACCGGCGG Direct Loss 0.978777512900441 0 0.07250008 0 prediction 0.957555025800882 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507522 chr20:35507522 nonsynonymous SNV 0.968 4 21 hm5C_associated_SNPs_47056 0 0 0 0 2 membrane 0.500297553737622 0 0 0.000595107475243717 hm5C_site_2376 DeepMRMD:0;iRNA_m5C:0.000595107475243717 2377 chr17 56233200 56233200 1 + C T STAD 56233200 + 56233180 56233220 41 GGTGATGCTGAGGTCCCACTCGGGAAAGGCAAGGAGGAAGG GGTGATGCTGAGGTCCCACTTGGGAAAGGCAAGGAGGAAGG Direct Loss 0.97874973486293 0 0.8957839 0 prediction 0.95749946972586 Functional Loss - OR4D1 ENSG00000141194 CDS Human protein_coding chr17:56233200 chr17:56233200 nonsynonymous SNV 0.981 3 21 hm5C_associated_SNPs_47057 0 0 0 0 0 unknown 0.500231643921092 0 0.7915678 0.000463287842184856 hm5C_site_2377 DeepMRMD:0.7915678;iRNA_m5C:0.000463287842184856 2378 chr12 48358151 48358151 1 + C T LUAD 48358151 + 48358131 48358171 41 TTCCCATATGTGGAATTCACCGGGAGAGATAGCATCACCTG TTCCCATATGTGGAATTCACTGGGAGAGATAGCATCACCTG Direct Loss 0.978741400762873 0 0.92626846 0 prediction 0.957482801525746 Functional Loss - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48358151 chr12:48358151 synonymous SNV . 0 21 hm5C_associated_SNPs_47058 0 0 1 0 1 Ribosome 0.500231645414485 0 0.85253692 0.000463290828969454 hm5C_site_2378 DeepMRMD:0.85253692;iRNA_m5C:0.000463290828969454 2379 chr19 51274590 51274590 1 + C T UCEC 51274590 + 51274570 51274610 41 TCATCCGGGCCAAGCTCTTGCGGGAGGGCTGGGTCCATGCC TCATCCGGGCCAAGCTCTTGTGGGAGGGCTGGGTCCATGCC Direct Loss 0.978741314711226 0 0.91840315 0 prediction 0.957482629422451 Functional Loss - GPR32 ENSG00000142511 CDS Human protein_coding chr19:51274590 chr19:51274590 nonsynonymous SNV 0.000 3 21 hm5C_associated_SNPs_47059 0 0 0 0 0 unknown 0.500231643939121 0 0.8368063 0.00046328787824268 hm5C_site_2379 DeepMRMD:0.8368063;iRNA_m5C:0.00046328787824268 2380 chr5 169533280 169533280 1 + C A UCEC 169533280 + 169533260 169533300 41 CGGGGCTTGGGGGGAGCGACCTGGGCTGGCTGCCCATCCCC CGGGGCTTGGGGGGAGCGACATGGGCTGGCTGCCCATCCCC Direct Loss 0.978736478261912 0 0.93790495 0 prediction 0.957472956523824 Functional Loss - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169533280 chr5:169533280 nonsynonymous SNV 0.979 4 21 hm5C_associated_SNPs_47060 0 0 0 0 0 exosome 0.500231643921356 0 0.8758099 0.00046328784271199 hm5C_site_2380 DeepMRMD:0.8758099;iRNA_m5C:0.00046328784271199 2381 chr13 112722089 112722089 1 + C T UCEC 112722089 + 112722069 112722109 41 GGCGGAGGCGGGGGCGGCGGCGGCGGCGGGGGCGCCAAGGC GGCGGAGGCGGGGGCGGCGGTGGCGGCGGGGGCGCCAAGGC Direct Loss 0.978716931059155 0 0.94220906 0 prediction 0.95743386211831 Functional Loss - SOX1 ENSG00000182968 CDS Human protein_coding chr13:112722089 chr13:112722089 synonymous SNV . 0 21 hm5C_associated_SNPs_47061 0 0 0 0 0 unknown 0.500231543808153 0 0.88441812 0.000463087616305202 hm5C_site_2381 DeepMRMD:0.88441812;iRNA_m5C:0.000463087616305202 2382 chr20 43945628 43945628 1 + C G rs60565951 43945628 + 43945608 43945648 41 GGTAGCCCCGGCTGCCCACCCTGGAGGGCTGCGCCCGCGCC GGTAGCCCCGGCTGCCCACCGTGGAGGGCTGCGCCCGCGCC Direct Loss 0.97871551584111 0 0.54630846 0 prediction 0.957431031682219 Functional Loss - RBPJL ENSG00000124232 UTR3 Human protein_coding chr20:43945628 chr20:43945628 . . 0 21 hm5C_associated_SNPs_47062 0 0 0 0 0 unknown 0.500231643921092 0 0.09261692 0.000463287842184856 hm5C_site_2382 DeepMRMD:0.09261692;iRNA_m5C:0.000463287842184856 2383 chr15 33023098 33023098 1 + C G rs2280738 33023098 + 33023078 33023118 41 GGGCGGGGCACTGCCATGCCCGGGGAGGAGGTGCTGGAGTC GGGCGGGGCACTGCCATGCCGGGGGAGGAGGTGCTGGAGTC Direct Loss 0.978715291560165 0 0.90000707 0 prediction 0.957430583120329 Functional Loss - GREM1 ENSG00000166923 CDS Human protein_coding chr15:33023098 chr15:33023098 synonymous SNV . 0 21 hm5C_associated_SNPs_47063 1 0 0 0 0 exosome 0.500231643921101 0 0.80001414 0.000463287842201066 hm5C_site_2383 DeepMRMD:0.80001414;iRNA_m5C:0.000463287842201066 not specified not specified 2384 chr4 147560460 147560460 1 + C T STAD 147560460 + 147560440 147560480 41 TCGAGCAACGCTGGTGGTGGCGGCGGCGGCGGCGGCGGCGG TCGAGCAACGCTGGTGGTGGTGGCGGCGGCGGCGGCGGCGG Direct Loss 0.978690180079974 0 0.9286472 0 prediction 0.957380360159947 Functional Loss - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147560460 chr4:147560460 synonymous SNV . 0 21 hm5C_associated_SNPs_47064 0 0 0 0 0 unknown 0.500231644162146 0 0.8572944 0.000463288324292099 hm5C_site_2384 DeepMRMD:0.8572944;iRNA_m5C:0.000463288324292099 2385 chr6 4021934 4021934 1 + C T rs540317183 4021934 + 4021914 4021954 41 CCTGCCGCGCGTCGTTGCCCCGGGAGGCGTAGGCGCGAGCG CCTGCCGCGCGTCGTTGCCCTGGGAGGCGTAGGCGCGAGCG Direct Loss 0.978630779761356 0 0.9263034 0 prediction 0.957261559522713 Functional Loss - PRPF4B ENSG00000112739 UTR5 Human protein_coding chr6:4021934 chr6:4021934 . . 0 21 hm5C_associated_SNPs_47065 0 0 1 0 0 Nucleus 0.500231643921308 0 0.8526068 0.000463287842615401 hm5C_site_2385 DeepMRMD:0.8526068;iRNA_m5C:0.000463287842615401 2386 chr1 32671824 32671824 1 + C G OV 32671824 + 32671804 32671844 41 CTGAGTATGAGGCGATTGTACGAGAGGTCGAGGGCGACCTG CTGAGTATGAGGCGATTGTAGGAGAGGTCGAGGGCGACCTG Direct Loss 0.978599204038639 0 0.9079529 0 prediction 0.957198408077279 Functional Loss - IQCC ENSG00000160051 CDS Human protein_coding chr1:32671824 chr1:32671824 nonsynonymous SNV 0.982 0 21 hm5C_associated_SNPs_47066 0 0 0 0 2 chromatin 0.500232744768727 0 0.8159058 0.000465489537453623 hm5C_site_2386 DeepMRMD:0.8159058;iRNA_m5C:0.000465489537453623 2387 chr8 117950593 117950593 1 + C T STAD 117950593 + 117950573 117950613 41 CGTCCCGCGTGCGACTTCTTCGGGGACGGCAGGAGCACGGA CGTCCCGCGTGCGACTTCTTTGGGGACGGCAGGAGCACGGA Direct Loss 0.978596166912868 0 0.93754673 0 prediction 0.957192333825737 Functional Loss - AARD ENSG00000205002 CDS Human protein_coding chr8:117950593 chr8:117950593 synonymous SNV . 0 21 hm5C_associated_SNPs_47067 0 0 0 0 0 exosome 0.500231644086938 0 0.87509346 0.000463288173875309 hm5C_site_2387 DeepMRMD:0.87509346;iRNA_m5C:0.000463288173875309 2388 chr11 400063 400063 1 + C T CESC 400063 + 400043 400083 41 CCTGGTGTTGAGCCCCCTGTCGGGGGCTGGGGGTCCCCCCC CCTGGTGTTGAGCCCCCTGTTGGGGGCTGGGGGTCCCCCCC Direct Loss 0.978576053665659 0 0.9604398 0 prediction 0.957152107331318 Functional Loss - PKP3 ENSG00000184363 CDS Human protein_coding chr11:400063 chr11:400063 nonsynonymous SNV 0.358 4 21 hm5C_associated_SNPs_47068 0 0 1 0 2 Ribosome 0.500231643921092 0 0.9208796 0.000463287842184856 hm5C_site_2388 DeepMRMD:0.9208796;iRNA_m5C:0.000463287842184856 2389 chr20 25388436 25388436 1 + C T rs549010664 25388436 + 25388416 25388456 41 GCTGGTGGTTGGCAAGGCCGCGGGAGTGGGAAGCGTCCGCC GCTGGTGGTTGGCAAGGCCGTGGGAGTGGGAAGCGTCCGCC Direct Loss 0.978553834659012 0 0.9061183 0 prediction 0.957107669318023 Functional Loss - GINS1 ENSG00000101003 UTR5 Human protein_coding chr20:25388436 chr20:25388436 . . 0 21 hm5C_associated_SNPs_47069 0 0 1 0 1 Ribosome 0.5002316370196 0 0.8122366 0.000463274039200101 hm5C_site_2389 DeepMRMD:0.8122366;iRNA_m5C:0.000463274039200101 2390 chr14 29237347 29237347 1 + C A LUAD 29237347 + 29237327 29237367 41 GGGCCAAGCTGGCCTTCAAGCGCGGTGCGCGCCTCACCTCC GGGCCAAGCTGGCCTTCAAGAGCGGTGCGCGCCTCACCTCC Direct Loss 0.978531847131805 0 0.9174524 0 prediction 0.95706369426361 Functional Loss - FOXG1 ENSG00000176165 CDS Human protein_coding chr14:29237347 chr14:29237347 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47070 0 0 0 0 0 Cytosol 0.500231643921092 0 0.8349048 0.000463287842184856 hm5C_site_2390 DeepMRMD:0.8349048;iRNA_m5C:0.000463287842184856 2391 chrX 69282423 69282423 1 + C T COAD 69282423 + 69282403 69282443 41 GCATACTGCGCCGCCACCAACGCGAGAGGCAGGAGCTGCAG GCATACTGCGCCGCCACCAATGCGAGAGGCAGGAGCTGCAG Direct Loss 0.97850178049766 0 0.9119504 0 prediction 0.957003560995319 Functional Loss - OTUD6A ENSG00000189401 CDS Human protein_coding chrX:69282423 chrX:69282423 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_47071 0 0 0 0 0 unknown 0.500231643922934 0 0.8239008 0.000463287845867688 hm5C_site_2391 DeepMRMD:0.8239008;iRNA_m5C:0.000463287845867688 2392 chr7 107303845 107303845 1 + C T BLCA 107303845 + 107303825 107303865 41 GCTGCTTAGTGACGTCATTTCGGGAGTTAGTACTGGGCTAG GCTGCTTAGTGACGTCATTTTGGGAGTTAGTACTGGGCTAG Direct Loss 0.978501453748082 0 0.9200477 0 prediction 0.957002907496163 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107303845 chr7:107303845 nonsynonymous SNV 0.686 5 21 hm5C_associated_SNPs_47072 1 0 0 0 1 Nucleus 0.500231727972661 0 0.8400954 0.0004634559453216 hm5C_site_2392 DeepMRMD:0.8400954;iRNA_m5C:0.0004634559453216 Pendred's syndrome Pendred's syndrome 2393 chr10 112258061 112258061 1 + C A BLCA 112258061 + 112258041 112258081 41 GGCCCGGGGCGGCGCGGTGTCGGCGCGCTACGTGCTGCCCG GGCCCGGGGCGGCGCGGTGTAGGCGCGCTACGTGCTGCCCG Direct Loss 0.978461959869915 0 0.9089618 0 prediction 0.956923919739831 Functional Loss - DUSP5 ENSG00000138166 CDS Human protein_coding chr10:112258061 chr10:112258061 stopgain 0.994 0 21 hm5C_associated_SNPs_47073 0 0 0 0 0 Cytosol 0.500247112653502 0 0.8179236 0.000494225307004381 hm5C_site_2393 DeepMRMD:0.8179236;iRNA_m5C:0.000494225307004381 2394 chrX 46433887 46433887 1 + C T BLCA 46433887 + 46433867 46433907 41 GCTGCGGCTGTACGCGCCGCCGGGGGACCCCGCTGCGCGCG GCTGCGGCTGTACGCGCCGCTGGGGGACCCCGCTGCGCGCG Direct Loss 0.978438445534203 0 0.932565 0 prediction 0.956876891068407 Functional Loss - CHST7 ENSG00000147119 CDS Human protein_coding chrX:46433887 chrX:46433887 nonsynonymous SNV 0.917 2 21 hm5C_associated_SNPs_47074 0 0 1 0 0 Endoplasmic reticulum 0.500231645947859 0 0.86513 0.000463291895718365 hm5C_site_2394 DeepMRMD:0.86513;iRNA_m5C:0.000463291895718365 2395 chr20 43374695 43374695 1 + C T SKCM 43374695 + 43374675 43374715 41 GTCCAGAAGCGGGGCGCTCTCCGGAGGAAGTTCGGCTTCTC GTCCAGAAGCGGGGCGCTCTTCGGAGGAAGTTCGGCTTCTC Direct Loss 0.978428306999197 0 0.9306811 0 prediction 0.956856613998394 Functional Loss - KCNK15 ENSG00000124249 CDS Human protein_coding chr20:43374695 chr20:43374695 synonymous SNV . 0 21 hm5C_associated_SNPs_47075 0 0 0 0 0 Nucleus 0.500231643921092 0 0.8613622 0.000463287842184856 hm5C_site_2395 DeepMRMD:0.8613622;iRNA_m5C:0.000463287842184856 2396 chr1 152573450 152573450 1 + C T COAD 152573450 + 152573430 152573470 41 AGGGGCAGTGGTCAGCAAGGCGGGGGCTCCTGCCGTGGCCA AGGGGCAGTGGTCAGCAAGGTGGGGGCTCCTGCCGTGGCCA Direct Loss 0.978424598404787 0 0.9129604 0 prediction 0.956849196809573 Functional Loss - LCE3C ENSG00000244057 CDS Human protein_coding chr1:152573450 chr1:152573450 synonymous SNV . 0 21 hm5C_associated_SNPs_47076 0 0 0 0 0 unknown 0.500231643916207 0 0.8259208 0.000463287832414006 hm5C_site_2396 DeepMRMD:0.8259208;iRNA_m5C:0.000463287832414006 2397 chr19 30934659 30934659 1 + C T SKCM 30934659 + 30934639 30934679 41 AGGAGAAGCCCCCCGCATCCCTGGAGGAGAAGGCCCACGTG AGGAGAAGCCCCCCGCATCCTTGGAGGAGAAGGCCCACGTG Direct Loss 0.978383498698976 0 0.5231172 0 prediction 0.956766997397952 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934659 chr19:30934659 synonymous SNV . 0 21 hm5C_associated_SNPs_47077 0 0 0 0 0 exosome 0.500231643921092 0 0.0462343999999999 0.000463287842184856 hm5C_site_2397 DeepMRMD:0.0462343999999999;iRNA_m5C:0.000463287842184856 2398 chr20 21687284 21687284 1 + C A LUSC 21687284 + 21687264 21687304 41 TCCATTCTGCCCGGGGCCATCGGGGGGAGCAAGCCCCGCGT TCCATTCTGCCCGGGGCCATAGGGGGGAGCAAGCCCCGCGT Direct Loss 0.978366756969284 0 0.9649943 0 prediction 0.956733513938569 Functional Loss - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21687284 chr20:21687284 synonymous SNV . 0 21 hm5C_associated_SNPs_47078 0 0 0 0 0 unknown 0.500231643921092 0 0.9299886 0.000463287842184856 hm5C_site_2398 DeepMRMD:0.9299886;iRNA_m5C:0.000463287842184856 2399 chr7 99661928 99661928 1 + C T CESC 99661928 + 99661908 99661948 41 GATTGTGGCAAGGCTTTCAGCGGGAAAGGCAGCCTCATTCG GATTGTGGCAAGGCTTTCAGTGGGAAAGGCAGCCTCATTCG Direct Loss 0.978352678138404 0 0.88746345 0 prediction 0.956705356276808 Functional Loss - ZSCAN21 ENSG00000166529 CDS Human protein_coding chr7:99661928 chr7:99661928 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_47079 0 0 0 0 0 chromatin 0.500231653684162 0 0.7749269 0.000463307368324894 hm5C_site_2399 DeepMRMD:0.7749269;iRNA_m5C:0.000463307368324894 2400 chrX 7811752 7811752 1 + C A LUAD 7811752 + 7811732 7811772 41 CCCAGCACGACCCCCTGAGTCAGGAGGCCGAGCTGGAGGAA CCCAGCACGACCCCCTGAGTAAGGAGGCCGAGCTGGAGGAA Direct Loss 0.978303107975279 0 0.9300345 0 prediction 0.956606215950558 Functional Loss - VCX ENSG00000182583 CDS Human protein_coding chrX:7811752 chrX:7811752 nonsynonymous SNV 0.013 0 21 hm5C_associated_SNPs_47080 0 0 0 0 0 unknown 0.500231647158007 0 0.860069 0.000463294316013663 hm5C_site_2400 DeepMRMD:0.860069;iRNA_m5C:0.000463294316013663 2401 chr1 150484918 150484918 1 + C T UCEC 150484918 + 150484898 150484938 41 GCCACCCTCCCAGCCCTACTCGGGATGAGTGCTTTGCCCGT GCCACCCTCCCAGCCCTACTTGGGATGAGTGCTTTGCCCGT Direct Loss 0.978278404809617 0 0.9517625 0 prediction 0.956556809619235 Functional Loss - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150484918 chr1:150484918 nonsynonymous SNV 0.721 5 21 hm5C_associated_SNPs_47081 0 0 1 0 1 Endoplasmic reticulum 0.50023164392109 0 0.903525 0.000463287842180415 hm5C_site_2401 DeepMRMD:0.903525;iRNA_m5C:0.000463287842180415 2402 chr11 123811011 123811011 1 + C T GBM 123811011 + 123810991 123811031 41 TCATGCTCCGAAGCCACTCACGGGAGGGCCGCAGCAAGGCC TCATGCTCCGAAGCCACTCATGGGAGGGCCGCAGCAAGGCC Direct Loss 0.978253410186317 0 0.9452017 0 prediction 0.956506820372633 Functional Loss - OR4D5 ENSG00000171014 CDS Human protein_coding chr11:123811011 chr11:123811011 nonsynonymous SNV 0.023 2 21 hm5C_associated_SNPs_47082 0 0 0 0 0 exosome 0.500231643930303 0 0.8904034 0.000463287860606787 hm5C_site_2402 DeepMRMD:0.8904034;iRNA_m5C:0.000463287860606787 2403 chr14 31091549 31091549 1 + C T UCEC 31091549 + 31091529 31091569 41 GCTCGTGGGAGCCAAGATGGCGGCGGCGGCGGCAGCGACAG GCTCGTGGGAGCCAAGATGGTGGCGGCGGCGGCAGCGACAG Direct Loss 0.97824011233897 0 0.8966569 0 prediction 0.95648022467794 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31091549 chr14:31091549 nonsynonymous SNV 0.522 2 21 hm5C_associated_SNPs_47083 0 0 1 0 1 Cytosol 0.500231645231881 0 0.7933138 0.000463290463762034 hm5C_site_2403 DeepMRMD:0.7933138;iRNA_m5C:0.000463290463762034 2404 chr21 44592355 44592355 1 + C T LGG 44592355 + 44592335 44592375 41 AGCGAGCCATCCCCGTGTCGCGGGAGGAGAAGCCCACCTCG AGCGAGCCATCCCCGTGTCGTGGGAGGAGAAGCCCACCTCG Direct Loss 0.978238276054658 0 0.9403678 0 prediction 0.956476552109315 Functional Loss - CRYAA;LOC102724652 ENSG00000160202 CDS Human protein_coding chr21:44592355 chr21:44592355 nonsynonymous SNV 0.907 4 21 hm5C_associated_SNPs_47084 0 0 0 0 0 unknown 0.500231643920743 0 0.8807356 0.000463287841486748 hm5C_site_2404 DeepMRMD:0.8807356;iRNA_m5C:0.000463287841486748 2405 chr14 24607790 24607790 1 + C T UCEC 24607790 + 24607770 24607810 41 GTGAGGAGGCAAGGGCAGGGCAGGGGTGGGCAGAGGCAGCT GTGAGGAGGCAAGGGCAGGGTAGGGGTGGGCAGAGGCAGCT Direct Loss 0.978231680226304 0 0.87082887 0 prediction 0.956463360452608 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607790 chr14:24607790 synonymous SNV . 0 21 hm5C_associated_SNPs_47085 0 0 1 0 0 Ribosome 0.500231643916184 0 0.74165774 0.000463287832368486 hm5C_site_2405 DeepMRMD:0.74165774;iRNA_m5C:0.000463287832368486 2406 chr7 39247040 39247040 1 + C T UCEC 39247040 + 39247020 39247060 41 TGCTGTGGCCGGCGTGATGCCGGGAGGCCCCCCAGCCCTCA TGCTGTGGCCGGCGTGATGCTGGGAGGCCCCCCAGCCCTCA Direct Loss 0.978222187411487 0 0.9092413 0 prediction 0.956444374822973 Functional Loss - POU6F2 ENSG00000106536 CDS Human protein_coding chr7:39247040 chr7:39247040 nonsynonymous SNV 0.954 2 21 hm5C_associated_SNPs_47086 0 0 0 0 1 chromatin 0.500231643921093 0 0.8184826 0.000463287842185078 hm5C_site_2406 DeepMRMD:0.8184826;iRNA_m5C:0.000463287842185078 2407 chr6 109762007 109762007 1 + C T rs150353891 109762007 + 109761987 109762027 41 GAGCTTGGAGGAAAAGGAACCGGGAGCCGCCCACCCGGGGG GAGCTTGGAGGAAAAGGAACTGGGAGCCGCCCACCCGGGGG Direct Loss 0.978182335444195 0 0.9385464 0 prediction 0.956364670888391 Functional Loss - PPIL6;SMPD2 ENSG00000135587;ENSG00000185250 UTR5 Human other chr6:109762007 chr6:109762007 . . 0 21 hm5C_associated_SNPs_47087 0 0 0 0 0 unknown 0.500231644107214 0 0.8770928 0.000463288214427982 hm5C_site_2407 DeepMRMD:0.8770928;iRNA_m5C:0.000463288214427982 2408 chr5 60241095 60241095 1 + C T BLCA 60241095 + 60241075 60241115 41 TGGACGGCATGGGTTGGTCTCAGGATTTGTTCCGCGCCTTG TGGACGGCATGGGTTGGTCTTAGGATTTGTTCCGCGCCTTG Direct Loss 0.978172340164845 0 0.92262685 0 prediction 0.956344680329689 Functional Loss - NDUFAF2 ENSG00000164182 CDS Human protein_coding chr5:60241095 chr5:60241095 stopgain 0.003 0 21 hm5C_associated_SNPs_47088 0 0 1 0 0 Ribosome 0.500231644471392 0 0.8452537 0.000463288942783135 hm5C_site_2408 DeepMRMD:0.8452537;iRNA_m5C:0.000463288942783135 2409 chr19 13873592 13873592 1 + C T CESC 13873592 + 13873572 13873612 41 GCATCGTGCGGCGGAGGTCTCGGGACGTCCCGGAGAGCCCC GCATCGTGCGGCGGAGGTCTTGGGACGTCCCGGAGAGCCCC Direct Loss 0.978165092797443 0 0.94934756 0 prediction 0.956330185594885 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13873592 chr19:13873592 nonsynonymous SNV 0.009 2 21 hm5C_associated_SNPs_47089 0 0 1 0 0 Cytosol 0.500231483217677 0 0.89869512 0.000462966435353263 hm5C_site_2409 DeepMRMD:0.89869512;iRNA_m5C:0.000462966435353263 2410 chr15 24921102 24921102 1 + C T SKCM 24921102 + 24921082 24921122 41 GCGCCCCCGCTCCCCTGTCCCGGGACGCCTCCCCGCCCGGT GCGCCCCCGCTCCCCTGTCCTGGGACGCCTCCCCGCCCGGT Direct Loss 0.978163249587058 0 0.95791835 0 prediction 0.956326499174116 Functional Loss - NPAP1 ENSG00000185823 CDS Human protein_coding chr15:24921102 chr15:24921102 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_47090 0 0 0 0 0 Nucleus 0.500231644006585 0 0.9158367 0.000463288013169638 hm5C_site_2410 DeepMRMD:0.9158367;iRNA_m5C:0.000463288013169638 2411 chr5 128797332 128797332 1 + C A UCEC 128797332 + 128797312 128797352 41 AAATCCCGGCCCCGGCCCCACGGGGGCAGCATCCGCCCCGC AAATCCCGGCCCCGGCCCCAAGGGGGCAGCATCCGCCCCGC Direct Loss 0.97806630356656 0 0.9278725 0 prediction 0.956132607133119 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128797332 chr5:128797332 nonsynonymous SNV 0.541 0 21 hm5C_associated_SNPs_47091 0 0 0 0 0 exosome 0.500231643924637 0 0.855745 0.000463287849273186 hm5C_site_2411 DeepMRMD:0.855745;iRNA_m5C:0.000463287849273186 2412 chr19 16337279 16337279 1 + C T BLCA 16337279 + 16337259 16337299 41 AGCGAGATCGTGGGCTCCATCAAGATGCGAGTCTTCCTCTC AGCGAGATCGTGGGCTCCATTAAGATGCGAGTCTTCCTCTC Direct Loss 0.978028280411795 0 0.9091754 0 prediction 0.956056560823591 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16337279 chr19:16337279 synonymous SNV . 0 21 hm5C_associated_SNPs_47092 0 0 1 0 2 Ribosome 0.500231639649756 0 0.8183508 0.000463279299511399 hm5C_site_2412 DeepMRMD:0.8183508;iRNA_m5C:0.000463279299511399 2413 chrX 49645301 49645301 1 + C T SARC 49645301 + 49645281 49645321 41 GTGAGATGTCGTCGCTGTTTCGGGAGTTGTATTCTGGAAAC GTGAGATGTCGTCGCTGTTTTGGGAGTTGTATTCTGGAAAC Direct Loss 0.97800135206701 0 0.94540346 0 prediction 0.956002704134021 Functional Loss - USP27X ENSG00000242013 CDS Human other chrX:49645301 chrX:49645301 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_47093 0 0 1 0 0 exosome 0.500230406603856 0 0.89080692 0.000460813207711963 hm5C_site_2413 DeepMRMD:0.89080692;iRNA_m5C:0.000460813207711963 2414 chr16 204410 204410 1 + C G rs111716204 204410 + 204390 204430 41 GTACCGCTGAGCGCCGCCTCCGGGACCCCCAGGACAGGCTG GTACCGCTGAGCGCCGCCTCGGGGACCCCCAGGACAGGCTG Direct Loss 0.977996972112922 0 0.90747106 0 prediction 0.955993944225844 Functional Loss - HBZ ENSG00000130656 UTR3 Human protein_coding chr16:204410 chr16:204410 . . 0 21 hm5C_associated_SNPs_47094 0 0 1 0 0 nucleus 0.500231643921092 0 0.81494212 0.000463287842183302 hm5C_site_2414 DeepMRMD:0.81494212;iRNA_m5C:0.000463287842183302 2415 chr6 34738120 34738120 1 + C T SKCM 34738120 + 34738100 34738140 41 CCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGGCCC CCCCATATGGGGGGCCCTCCTATGATGCCAATGATGGGCCC Direct Loss 0.977989730846176 0 0.3695476 0 prediction 0.955979461692352 Functional Loss - SNRPC ENSG00000124562 CDS Human protein_coding chr6:34738120 chr6:34738120 synonymous SNV . 0 21 hm5C_associated_SNPs_47095 0 0 1 0 2 Ribosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_2415 DeepMRMD:0;iRNA_m5C:0.000463287842184856 2416 chr1 111862916 111862916 1 + C A LUSC 111862916 + 111862896 111862936 41 CGGGAGCGGGAGTAGCAGCTCTGGAGGCAGCTCGGGAGGCA CGGGAGCGGGAGTAGCAGCTATGGAGGCAGCTCGGGAGGCA Direct Loss 0.97797134782985 0 0.59235525 0 prediction 0.955942695659701 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111862916 chr1:111862916 nonsynonymous SNV 0.715 1 21 hm5C_associated_SNPs_47096 0 0 0 0 1 exosome 0.500231643921093 0 0.1847105 0.000463287842185967 hm5C_site_2416 DeepMRMD:0.1847105;iRNA_m5C:0.000463287842185967 2417 chr6 28053448 28053448 1 + C A rs544657964 28053448 + 28053428 28053468 41 ACCAGGATTCTCCTGGACCTCGCGAGGCACTGAGCCGCCTC ACCAGGATTCTCCTGGACCTAGCGAGGCACTGAGCCGCCTC Direct Loss 0.977958189130874 0 0.8914157 0 prediction 0.955916378261748 Functional Loss - ZNF165 ENSG00000197279 CDS Human protein_coding chr6:28053448 chr6:28053448 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47097 0 0 0 0 0 Endoplasmic reticulum 0.500210088209548 0 0.7828314 0.000420176419096974 hm5C_site_2417 DeepMRMD:0.7828314;iRNA_m5C:0.000420176419096974 2418 chr1 152882868 152882868 1 + C G KIRP 152882868 + 152882848 152882888 41 AGCTGGAGCTCCCAGAGCAGCAGGAGGGGCAGCTGGAGCTC AGCTGGAGCTCCCAGAGCAGGAGGAGGGGCAGCTGGAGCTC Direct Loss 0.977923724681134 0 0.89152026 0 prediction 0.955847449362269 Functional Loss - IVL ENSG00000163207 CDS Human protein_coding chr1:152882868 chr1:152882868 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_47098 0 0 0 0 0 unknown 0.500231643916959 0 0.78304052 0.000463287833917247 hm5C_site_2418 DeepMRMD:0.78304052;iRNA_m5C:0.000463287833917247 2419 chr19 18977553 18977553 1 + C A rs567906682 18977553 + 18977533 18977573 41 GCGGAGGAGGGGCCGGCCCGCGGGAGCCGCGGCCACCAGGA GCGGAGGAGGGGCCGGCCCGAGGGAGCCGCGGCCACCAGGA Direct Loss 0.977906249802185 0 0.9467242 0 prediction 0.955812499604371 Functional Loss - UPF1 ENSG00000005007 UTR3 Human protein_coding chr19:18977553 chr19:18977553 . . 0 21 hm5C_associated_SNPs_47099 0 0 1 0 0 Nucleus 0.500231643921092 0 0.8934484 0.000463287842184856 hm5C_site_2419 DeepMRMD:0.8934484;iRNA_m5C:0.000463287842184856 2420 chr12 4919281 4919281 1 + C T STAD 4919281 + 4919261 4919301 41 GGAGGGAGAGCAACAGGATGCGGGAGACTTCCCGGAGGCCG GGAGGGAGAGCAACAGGATGTGGGAGACTTCCCGGAGGCCG Direct Loss 0.977820899469437 0 0.9219891 0 prediction 0.955641798938873 Functional Loss - KCNA6 ENSG00000151079 CDS Human protein_coding chr12:4919281 chr12:4919281 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_47100 0 0 0 0 0 exosome 0.500231643921092 0 0.8439782 0.000463287842184856 hm5C_site_2420 DeepMRMD:0.8439782;iRNA_m5C:0.000463287842184856 2421 chr5 1244750 1244750 1 + C T rs562326695 1244750 + 1244730 1244770 41 GATGACATTGCGTGGATGACCGGGAGGCGGCCCAGCCCCTA GATGACATTGCGTGGATGACTGGGAGGCGGCCCAGCCCCTA Direct Loss 0.977791068808437 0 0.9174863 0 prediction 0.955582137616874 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1244750 chr5:1244750 synonymous SNV . 0 21 hm5C_associated_SNPs_47101 0 0 0 0 1 unknown 0.500231643920878 0 0.8349726 0.000463287841756088 hm5C_site_2421 DeepMRMD:0.8349726;iRNA_m5C:0.000463287841756088 2422 chr7 64498737 64498737 1 + C A BLCA 64498737 + 64498717 64498757 41 GAGGCGGAGGGAGGCGGTGGCGGCGGCGGCAGGATGGCGAC GAGGCGGAGGGAGGCGGTGGAGGCGGCGGCAGGATGGCGAC Direct Loss 0.977743043206504 0 0.9226102 0 prediction 0.955486086413009 Functional Loss - CCT6P3 ENSG00000234585 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64498737 chr7:64498737 . . 0 21 hm5C_associated_SNPs_47102 0 0 1 0 0 unknown 0.500213447985541 0 0.8452204 0.000426895971082031 hm5C_site_2422 DeepMRMD:0.8452204;iRNA_m5C:0.000426895971082031 2423 chr16 2848595 2848595 1 + C T COAD 2848595 + 2848575 2848615 41 ACCGGGGGCAGCGAGGAGGCCGGGAGGTGGAGGCCGCGAGG ACCGGGGGCAGCGAGGAGGCTGGGAGGTGGAGGCCGCGAGG Direct Loss 0.977740678382892 0 0.9082874 0 prediction 0.955481356765784 Functional Loss - PRSS41 ENSG00000215148 ncRNA_exonic Human protein_coding chr16:2848595 chr16:2848595 . . 0 21 hm5C_associated_SNPs_47103 0 0 0 0 0 unknown 0.500231643915016 0 0.8165748 0.000463287830032133 hm5C_site_2423 DeepMRMD:0.8165748;iRNA_m5C:0.000463287830032133 2424 chr16 88706307 88706307 1 + C A LUSC 88706307 + 88706287 88706327 41 GTATCGATGCACGGACGGGCCGCGAGACAGCTGCGCTCAAC GTATCGATGCACGGACGGGCAGCGAGACAGCTGCGCTCAAC Direct Loss 0.977618508167714 0 0.54262924 0 prediction 0.955237016335429 Functional Loss - IL17C ENSG00000124391 CDS Human protein_coding chr16:88706307 chr16:88706307 nonsynonymous SNV 0.047 2 21 hm5C_associated_SNPs_47104 0 0 0 0 0 exosome 0.500264091215775 0 0.08525848 0.000528182431549284 hm5C_site_2424 DeepMRMD:0.08525848;iRNA_m5C:0.000528182431549284 2425 chr3 183888241 183888241 1 + C T HNSC 183888241 + 183888221 183888261 41 GCAGCAGCCTGCGGGGGCCGCGGGAGCGGGCGCCCAGCGAG GCAGCAGCCTGCGGGGGCCGTGGGAGCGGGCGCCCAGCGAG Direct Loss 0.97760660711299 0 0.9361565 0 prediction 0.955213214225981 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183888241 chr3:183888241 nonsynonymous SNV 0.925 1 21 hm5C_associated_SNPs_47105 0 0 0 0 0 Cytosol 0.500231643921738 0 0.872313 0.00046328784347649 hm5C_site_2425 DeepMRMD:0.872313;iRNA_m5C:0.00046328784347649 2426 chr7 1889453 1889453 1 + C A rs555299717 1889453 + 1889433 1889473 41 AGTGGCAGCGGCAGCGGAAGCAGGACGGCGCGGTGCCCGAC AGTGGCAGCGGCAGCGGAAGAAGGACGGCGCGGTGCCCGAC Direct Loss 0.977600526141332 0 0.9048369 0 prediction 0.955201052282665 Functional Loss - MAD1L1 ENSG00000176349 UTR3 Human antisense chr7:1889453 chr7:1889453 . . 0 21 hm5C_associated_SNPs_47106 0 0 0 0 0 Cytosol 0.50023164433786 0 0.8096738 0.000463288675719431 hm5C_site_2426 DeepMRMD:0.8096738;iRNA_m5C:0.000463288675719431 2427 chr21 41143078 41143078 1 + C A HNSC 41143078 + 41143058 41143098 41 ACTTTGACTTGCGTGGCTACCTGGAAGAGCCTGAAGGCCCG ACTTTGACTTGCGTGGCTACATGGAAGAGCCTGAAGGCCCG Direct Loss 0.977568170766164 0 0.38945884 0 prediction 0.955136341532328 Functional Loss - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41143078 chr21:41143078 synonymous SNV . 0 21 hm5C_associated_SNPs_47107 0 0 0 0 1 exosome 0.500205084203234 0 0 0.000410168406467681 hm5C_site_2427 DeepMRMD:0;iRNA_m5C:0.000410168406467681 2428 chr10 129537088 129537088 1 + C T SKCM 129537088 + 129537068 129537108 41 CTGGCGGGCGACTTTTCTTTCGGGAGGCGGCCACCGACAGT CTGGCGGGCGACTTTTCTTTTGGGAGGCGGCCACCGACAGT Direct Loss 0.977535234953646 0 0.9644313 0 prediction 0.955070469907291 Functional Loss - FOXI2 ENSG00000186766 CDS Human protein_coding chr10:129537088 chr10:129537088 synonymous SNV . 0 21 hm5C_associated_SNPs_47108 0 0 0 0 0 exosome 0.500231643921094 0 0.9288626 0.000463287842187077 hm5C_site_2428 DeepMRMD:0.9288626;iRNA_m5C:0.000463287842187077 2429 chr6 26045786 26045786 1 + C T LUAD 26045786 + 26045766 26045806 41 GCCCGGGCACCGTGGCCTTGCGCGAAATCCGTCGCTACCAG GCCCGGGCACCGTGGCCTTGTGCGAAATCCGTCGCTACCAG Direct Loss 0.977528256331639 0 0.5652851 0 prediction 0.955056512663279 Functional Loss - HIST1H3C ENSG00000196532 CDS Human other chr6:26045786 chr6:26045786 nonsynonymous SNV 0.485 0 21 hm5C_associated_SNPs_47109 0 0 1 0 0 exosome 0.500231644836081 0 0.1305702 0.000463289672162803 hm5C_site_2429 DeepMRMD:0.1305702;iRNA_m5C:0.000463289672162803 2430 chr2 130737709 130737709 1 + C A KIRC 130737709 + 130737689 130737729 41 ATGTCCGCGGGCGGAGACTTCGGGAATCCGCTGAGGAAATT ATGTCCGCGGGCGGAGACTTAGGGAATCCGCTGAGGAAATT Direct Loss 0.97752633475375 0 0.90927213 0 prediction 0.955052669507501 Functional Loss - RAB6C ENSG00000222014 CDS Human protein_coding chr2:130737709 chr2:130737709 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_47110 0 0 0 0 0 exosome 0.500231643922869 0 0.81854426 0.00046328784573868 hm5C_site_2430 DeepMRMD:0.81854426;iRNA_m5C:0.00046328784573868 2431 chr19 16790859 16790859 1 + C T rs730120 16790859 + 16790839 16790879 41 TGCGCCATGCTGCATTGCTTCGGGAGCTACATCCTGGCTGA TGCGCCATGCTGCATTGCTTTGGGAGCTACATCCTGGCTGA Direct Loss 0.977482950798535 0 0.93341464 0 prediction 0.95496590159707 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16790859 chr19:16790859 synonymous SNV . 0 21 hm5C_associated_SNPs_47111 0 0 1 0 2 Ribosome 0.500231643920776 0 0.86682928 0.000463287841551141 hm5C_site_2431 DeepMRMD:0.86682928;iRNA_m5C:0.000463287841551141 2432 chr18 12308377 12308377 1 + C A rs8086993 12308377 + 12308357 12308397 41 GGCGCGGTGCAGGGCCTCTCCGCGGGTCGGCTGCTGGCGGG GGCGCGGTGCAGGGCCTCTCAGCGGGTCGGCTGCTGGCGGG Direct Loss 0.977475898256891 0 0.9328667 0 prediction 0.954951796513782 Functional Loss - TUBB6 ENSG00000176014 intronic Human protein_coding chr18:12308377 chr18:12308377 . . 0 21 hm5C_associated_SNPs_47112 0 0 0 0 0 Endoplasmic reticulum 0.500231643910363 0 0.8657334 0.000463287820725578 hm5C_site_2432 DeepMRMD:0.8657334;iRNA_m5C:0.000463287820725578 2433 chr2 191745945 191745945 1 + C A rs551795825 191745945 + 191745925 191745965 41 CGAGGCGGGGGACGGCCGGCCGCGGGCCCGGCTGCCGCCGC CGAGGCGGGGGACGGCCGGCAGCGGGCCCGGCTGCCGCCGC Direct Loss 0.977471869028026 0 0.9092448 0 prediction 0.954943738056051 Functional Loss - GLS ENSG00000115419 CDS Human protein_coding chr2:191745945 chr2:191745945 synonymous SNV . 0 21 hm5C_associated_SNPs_47113 0 0 1 0 0 Endoplasmic reticulum 0.500231643921478 0 0.8184896 0.000463287842956905 hm5C_site_2433 DeepMRMD:0.8184896;iRNA_m5C:0.000463287842956905 2434 chr6 36929690 36929690 1 + C T SKCM 36929690 + 36929670 36929710 41 TGAAGGGGAAACGGCCCTACCAGGAGGGGACTCCGTGCTCC TGAAGGGGAAACGGCCCTACTAGGAGGGGACTCCGTGCTCC Direct Loss 0.977463324165266 0 0.9200773 0 prediction 0.954926648330532 Functional Loss - PI16 ENSG00000164530 CDS Human protein_coding chr6:36929690 chr6:36929690 stopgain 0.960 0 21 hm5C_associated_SNPs_47114 0 0 0 0 2 exosome 0.500231643921093 0 0.8401546 0.000463287842186189 hm5C_site_2434 DeepMRMD:0.8401546;iRNA_m5C:0.000463287842186189 2435 chr19 52084728 52084728 1 + C T COAD 52084728 + 52084708 52084748 41 CTGCCCAGAGATGCCTGTACCGGGATGTGATGCTGGAGCTC CTGCCCAGAGATGCCTGTACTGGGATGTGATGCTGGAGCTC Direct Loss 0.977437978614431 0 0.9411011 0 prediction 0.954875957228862 Functional Loss - ZNF175 ENSG00000105497 CDS Human protein_coding chr19:52084728 chr19:52084728 nonsynonymous SNV 0.501 0 21 hm5C_associated_SNPs_47115 0 0 1 0 2 chromatin 0.50023173046335 0 0.8822022 0.000463460926700909 hm5C_site_2435 DeepMRMD:0.8822022;iRNA_m5C:0.000463460926700909 2436 chr22 50615953 50615953 1 + C T COAD 50615953 + 50615933 50615973 41 CCCGGACGGGGCGGCAGGTGCGGGGCCCGCGGTGCGCGTGA CCCGGACGGGGCGGCAGGTGTGGGGCCCGCGGTGCGCGTGA Direct Loss 0.977393762488646 0 0.9273281 0 prediction 0.954787524977292 Functional Loss - PANX2 ENSG00000073150 CDS Human protein_coding chr22:50615953 chr22:50615953 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_47116 0 0 1 0 0 Endoplasmic reticulum 0.500231644164315 0 0.8546562 0.000463288328630407 hm5C_site_2436 DeepMRMD:0.8546562;iRNA_m5C:0.000463288328630407 2437 chr10 50835788 50835788 1 + C T STAD 50835788 + 50835768 50835808 41 ATTGGCCTGCTGACGTCTGACGGGAGGAGCGAGTGGGCCGA ATTGGCCTGCTGACGTCTGATGGGAGGAGCGAGTGGGCCGA Direct Loss 0.977384469864197 0 0.90716696 0 prediction 0.954768939728393 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50835788 chr10:50835788 synonymous SNV . 0 21 hm5C_associated_SNPs_47117 0 0 0 0 1 unknown 0.500203718359202 0 0.81433392 0.000407436718404153 hm5C_site_2437 DeepMRMD:0.81433392;iRNA_m5C:0.000407436718404153 2438 chr6 109274522 109274522 1 + C T CESC 109274522 + 109274502 109274542 41 CCCGGTGCTGGCCGCCAACCCGGGGATAGTGGGCCTGCTCC CCCGGTGCTGGCCGCCAACCTGGGGATAGTGGGCCTGCTCC Direct Loss 0.977352491445955 0 0.9480864 0 prediction 0.95470498289191 Functional Loss - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109274522 chr6:109274522 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47118 0 0 0 0 1 exosome 0.500231643921092 0 0.8961728 0.000463287842183968 hm5C_site_2438 DeepMRMD:0.8961728;iRNA_m5C:0.000463287842183968 2439 chr13 46287911 46287911 1 + C G rs143200378 46287911 + 46287891 46287931 41 ACAGCACCCTGCAGCTCCTCCGGGAGGAGAATCGCGCGCTG ACAGCACCCTGCAGCTCCTCGGGGAGGAGAATCGCGCGCTG Direct Loss 0.977285201024013 0 0.90387547 0 prediction 0.954570402048025 Functional Loss - SPERT ENSG00000174015 CDS Human protein_coding chr13:46287911 chr13:46287911 nonsynonymous SNV 0.162 3 21 hm5C_associated_SNPs_47119 0 0 0 0 0 exosome 0.500231643922478 0 0.80775094 0.000463287844956639 hm5C_site_2439 DeepMRMD:0.80775094;iRNA_m5C:0.000463287844956639 2440 chr18 74962540 74962540 1 + C T LUAD 74962540 + 74962520 74962560 41 GGGAACCTCAGCGAGGGCAACGCGAGCTGGCCGGAGCCCCC GGGAACCTCAGCGAGGGCAATGCGAGCTGGCCGGAGCCCCC Direct Loss 0.977279960705661 0 0.8629814 0 prediction 0.954559921411322 Functional Loss - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74962540 chr18:74962540 synonymous SNV . 0 21 hm5C_associated_SNPs_47120 0 0 0 0 0 exosome 0.500231623482399 0 0.7259628 0.000463246964798492 hm5C_site_2440 DeepMRMD:0.7259628;iRNA_m5C:0.000463246964798492 2441 chr3 143691520 143691520 1 + C T BLCA 143691520 + 143691500 143691540 41 TCAAGCGCCTCGGCTCGCAGCGCGAGCTGGCGCAGCTCGAC TCAAGCGCCTCGGCTCGCAGTGCGAGCTGGCGCAGCTCGAC Direct Loss 0.977245002468738 0 0.4040208 0 prediction 0.954490004937475 Functional Loss - C3orf58 ENSG00000181744 CDS Human protein_coding chr3:143691520 chr3:143691520 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_47121 0 0 1 0 0 Ribosome 0.500231849860016 0 0 0.00046369972003113 hm5C_site_2441 DeepMRMD:0;iRNA_m5C:0.00046369972003113 2442 chr3 101572133 101572133 1 + C T LAML 101572133 + 101572113 101572153 41 GCTCCCCCGCAGAGCAGTGTCAGGACTTCCATGGAGGGCAG GCTCCCCCGCAGAGCAGTGTTAGGACTTCCATGGAGGGCAG Direct Loss 0.977200818469622 0 0.5085975 0 prediction 0.954401636939244 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101572133 chr3:101572133 stopgain 0.805 0 21 hm5C_associated_SNPs_47122 0 0 1 0 0 Endoplasmic reticulum 0.500232136713797 0 0.0171950000000001 0.000464273427594808 hm5C_site_2442 DeepMRMD:0.0171950000000001;iRNA_m5C:0.000464273427594808 2443 chr1 4772487 4772487 1 + C T LIHC 4772487 + 4772467 4772507 41 GTTCATCGCCTGGGGGCCCACGGGGGACGAGGAGGCCCTGG GTTCATCGCCTGGGGGCCCATGGGGGACGAGGAGGCCCTGG Direct Loss 0.977170903360167 0 0.92509043 0 prediction 0.954341806720335 Functional Loss - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4772487 chr1:4772487 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_47123 0 0 0 0 0 exosome 0.500231644381135 0 0.85018086 0.000463288762269531 hm5C_site_2443 DeepMRMD:0.85018086;iRNA_m5C:0.000463288762269531 2444 chr10 79686573 79686573 1 + C G rs572356267 79686573 + 79686553 79686593 41 GCGGAGGTGGGGACGGCGGCCGGGGCGCGCCCCGAGGCCGG GCGGAGGTGGGGACGGCGGCGGGGGCGCGCCCCGAGGCCGG Direct Loss 0.97715167939272 0 0.8951654 0 prediction 0.95430335878544 Functional Loss - DLG5-AS1 ENSG00000151208;ENSG00000233871 upstream Human other chr10:79686573 chr10:79686573 . . 0 21 hm5C_associated_SNPs_47124 0 0 0 0 0 unknown 0.500231644002553 0 0.7903308 0.000463288005105866 hm5C_site_2444 DeepMRMD:0.7903308;iRNA_m5C:0.000463288005105866 2445 chr18 22058551 22058551 1 + C G rs45572832 22058551 + 22058531 22058571 41 TGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAA TGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGGGAA Direct Loss 0.977140689847102 0 0.9371302 0 prediction 0.954281379694203 Functional Loss - HRH4 ENSG00000134489 UTR3 Human protein_coding chr18:22058551 chr18:22058551 . . 0 21 hm5C_associated_SNPs_47125 0 0 0 0 0 exosome 0.500231643921092 0 0.8742604 0.000463287842184856 hm5C_site_2445 DeepMRMD:0.8742604;iRNA_m5C:0.000463287842184856 2446 chr7 89748992 89748992 1 + C T UCEC 89748992 + 89748972 89749012 41 GTGGAAAAGTCGGCCCTAGGCGGCGGGAGGTCCTTCCGGCG GTGGAAAAGTCGGCCCTAGGTGGCGGGAGGTCCTTCCGGCG Direct Loss 0.977118886875965 0 0.88821214 0 prediction 0.954237773751931 Functional Loss - DPY19L2P4 ENSG00000235436 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:89748992 chr7:89748992 . . 0 21 hm5C_associated_SNPs_47126 0 0 0 0 0 unknown 0.500231643921092 0 0.77642428 0.000463287842184856 hm5C_site_2446 DeepMRMD:0.77642428;iRNA_m5C:0.000463287842184856 2447 chr1 152659474 152659474 1 + C G HNSC 152659474 + 152659454 152659494 41 TTCTTGCTGTGGTCCCATCTCTGGGGGCTGCTGTGGTCCCA TTCTTGCTGTGGTCCCATCTGTGGGGGCTGCTGTGGTCCCA Direct Loss 0.977097425729947 0 0.93854994 0 prediction 0.954194851459895 Functional Loss - LCE2B ENSG00000159455 CDS Human protein_coding chr1:152659474 chr1:152659474 nonsynonymous SNV 0.364 3 21 hm5C_associated_SNPs_47127 0 0 0 0 0 unknown 0.500231643921097 0 0.87709988 0.000463287842193738 hm5C_site_2447 DeepMRMD:0.87709988;iRNA_m5C:0.000463287842193738 2448 chr2 71211870 71211870 1 + C T rs553847186 71211870 + 71211850 71211890 41 TCTCCAAGACCCCAGAGCAACGGGAATCGCAGCGTTCCAGG TCTCCAAGACCCCAGAGCAATGGGAATCGCAGCGTTCCAGG Direct Loss 0.977057062654863 0 0.91009825 0 prediction 0.954114125309725 Functional Loss - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71211870 chr2:71211870 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_47128 0 0 0 0 0 exosome 0.500231470181682 0 0.8201965 0.000462940363364028 hm5C_site_2448 DeepMRMD:0.8201965;iRNA_m5C:0.000462940363364028 2449 chr17 62076394 62076394 1 + C T UCEC 62076394 + 62076374 62076414 41 GCTGCTGAGTCGCCTGGTGGCTGGAGCGCTGCAGCCCCGGC GCTGCTGAGTCGCCTGGTGGTTGGAGCGCTGCAGCCCCGGC Direct Loss 0.977033001338467 0 0.51868296 0 prediction 0.954066002676935 Functional Loss - PRR29 ENSG00000224383 CDS Human protein_coding chr17:62076394 chr17:62076394 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_47129 0 0 0 0 2 exosome 0.500231613525757 0 0.0373659200000001 0.000463227051514137 hm5C_site_2449 DeepMRMD:0.0373659200000001;iRNA_m5C:0.000463227051514137 2450 chr16 30409298 30409298 1 + C T HNSC 30409298 + 30409278 30409318 41 TCAAGCACCAGCGGACACACCGGGGGGAGCAGCCCCCCCGA TCAAGCACCAGCGGACACACTGGGGGGAGCAGCCCCCCCGA Direct Loss 0.977029484688797 0 0.9394685 0 prediction 0.954058969377594 Functional Loss - ZNF48 ENSG00000180035 CDS Human protein_coding chr16:30409298 chr16:30409298 nonsynonymous SNV 0.375 3 21 hm5C_associated_SNPs_47130 0 0 1 0 0 Ribosome 0.500231643934407 0 0.878937 0.000463287868813556 hm5C_site_2450 DeepMRMD:0.878937;iRNA_m5C:0.000463287868813556 2451 chr1 201951974 201951974 1 + C T rs533182047 201951974 + 201951954 201951994 41 GCAGGGAGCCGGGGGCTGAGCGGCACCGCGGTCCTGGACCT GCAGGGAGCCGGGGGCTGAGTGGCACCGCGGTCCTGGACCT Direct Loss 0.97700386085545 0 0.87518954 0 prediction 0.9540077217109 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201951974 chr1:201951974 synonymous SNV . 0 21 hm5C_associated_SNPs_47131 0 0 1 0 0 Ribosome 0.500231643921093 0 0.75037908 0.000463287842185078 hm5C_site_2451 DeepMRMD:0.75037908;iRNA_m5C:0.000463287842185078 2452 chr9 21409239 21409239 1 + C T CESC 21409239 + 21409219 21409259 41 GCTACAAGTCATTCAGCTCTCTGGGCTGTGATCTGCCTCAG GCTACAAGTCATTCAGCTCTTTGGGCTGTGATCTGCCTCAG Direct Loss 0.977002013104482 0 0.89824593 0 prediction 0.954004026208964 Functional Loss - IFNA8 ENSG00000120242 CDS Human protein_coding chr9:21409239 chr9:21409239 synonymous SNV . 0 21 hm5C_associated_SNPs_47132 0 0 0 0 0 unknown 0.500231642686103 0 0.79649186 0.000463285372206856 hm5C_site_2452 DeepMRMD:0.79649186;iRNA_m5C:0.000463285372206856 2453 chr4 81952673 81952673 1 + C T GBM 81952673 + 81952653 81952693 41 CGGCCCGGACACCGGGCTCCCTGGAGGGAGGCTCGCAGCCC CGGCCCGGACACCGGGCTCCTTGGAGGGAGGCTCGCAGCCC Direct Loss 0.976990776227003 0 0.88262635 0 prediction 0.953981552454006 Functional Loss - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81952673 chr4:81952673 synonymous SNV . 0 21 hm5C_associated_SNPs_47133 0 0 0 0 1 Nucleus 0.500231643921392 0 0.7652527 0.000463287842783044 hm5C_site_2453 DeepMRMD:0.7652527;iRNA_m5C:0.000463287842783044 2454 chr9 140120453 140120453 1 + G A UCEC 140120453 - 140120433 140120473 41 GGCAGAAGGGGGGGCAGTGGCAGCAGTGGCAGCAGGGGCAG GGCAGAAGGGGGGGCAGTGGTAGCAGTGGCAGCAGGGGCAG Direct Loss 0.976979623578753 0 0.90148467 0 prediction 0.953959247157506 Functional Loss - CYSRT1 ENSG00000197191 CDS Human protein_coding chr9:140120453 chr9:140120453 nonsynonymous SNV 0.537 3 21 hm5C_associated_SNPs_47134 0 0 0 0 0 Ribosome 0.500231643921092 0 0.80296934 0.000463287842184856 hm5C_site_2454 DeepMRMD:0.80296934;iRNA_m5C:0.000463287842184856 2455 chr9 131581004 131581004 1 + C A rs558558430 131581004 + 131580984 131581024 41 CCTGACCCTGGCGTCGGGCGCGGGGCTGGGTGCGGTCGTCG CCTGACCCTGGCGTCGGGCGAGGGGCTGGGTGCGGTCGTCG Direct Loss 0.976962088966472 0 0.91556466 0 prediction 0.953924177932944 Functional Loss - ENDOG ENSG00000167136 CDS Human protein_coding chr9:131581004 chr9:131581004 nonsynonymous SNV 0.993 0 21 hm5C_associated_SNPs_47135 0 0 1 0 0 Cytosol 0.500231617815249 0 0.83112932 0.000463235630498993 hm5C_site_2455 DeepMRMD:0.83112932;iRNA_m5C:0.000463235630498993 2456 chr20 21686412 21686412 1 + C T CESC 21686412 + 21686392 21686432 41 GTCCTGGGAGGGGGCAGCAGCGGCGGCGGCAGGCCCTGGAG GTCCTGGGAGGGGGCAGCAGTGGCGGCGGCAGGCCCTGGAG Direct Loss 0.9769593614351 0 0.91436046 0 prediction 0.9539187228702 Functional Loss - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21686412 chr20:21686412 nonsynonymous SNV 0.330 2 21 hm5C_associated_SNPs_47136 0 0 0 0 0 unknown 0.500231643921092 0 0.82872092 0.000463287842184856 hm5C_site_2456 DeepMRMD:0.82872092;iRNA_m5C:0.000463287842184856 2457 chr13 37580090 37580090 1 + C A rs140108815 37580090 + 37580070 37580110 41 TCTACCACCCCTGTGTTCATCGAGATTCCGGTCTGGACCTC TCTACCACCCCTGTGTTCATAGAGATTCCGGTCTGGACCTC Direct Loss 0.97694656376672 0 0.87946653 0 prediction 0.953893127533441 Functional Loss - EXOSC8 ENSG00000120699 CDS Human protein_coding chr13:37580090 chr13:37580090 stopgain 0.993 1 21 hm5C_associated_SNPs_47137 0 0 1 0 2 Ribosome 0.500231643921088 0 0.75893306 0.000463287842175086 hm5C_site_2457 DeepMRMD:0.75893306;iRNA_m5C:0.000463287842175086 2458 chr12 96350685 96350685 1 + C T HNSC 96350685 + 96350665 96350705 41 GCGTGATTGAGCGCGCCCGGCGGGAGCTGGACATCGGCATC GCGTGATTGAGCGCGCCCGGTGGGAGCTGGACATCGGCATC Direct Loss 0.97691370052111 0 0.8683318 0 prediction 0.95382740104222 Functional Loss - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96350685 chr12:96350685 nonsynonymous SNV 0.230 3 21 hm5C_associated_SNPs_47138 0 0 1 0 1 Cytosol 0.50023074342312 0 0.7366636 0.000461486846240922 hm5C_site_2458 DeepMRMD:0.7366636;iRNA_m5C:0.000461486846240922 2459 chr17 46628467 46628467 1 + G C LUSC 46628467 - 46628447 46628487 41 GGGGGCGGTGGCGGCGGCGGCGGGGGAGGGGACAAGAGCCC GGGGGCGGTGGCGGCGGCGGGGGGGGAGGGGACAAGAGCCC Direct Loss 0.976905826305231 0 0.93517935 0 prediction 0.953811652610463 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628467 chr17:46628467 synonymous SNV . 0 21 hm5C_associated_SNPs_47139 0 0 1 0 1 Nucleus 0.50023164392128 0 0.8703587 0.00046328784255989 hm5C_site_2459 DeepMRMD:0.8703587;iRNA_m5C:0.00046328784255989 2460 chr1 170136764 170136764 1 + C G UCEC 170136764 + 170136744 170136784 41 TCTCTGACAGCAGTGTGACTCGGGACATGGACATCCTCCGG TCTCTGACAGCAGTGTGACTGGGGACATGGACATCCTCCGG Direct Loss 0.976839347343574 0 0.9257574 0 prediction 0.953678694687147 Functional Loss - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170136764 chr1:170136764 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47140 0 0 0 0 0 unknown 0.50026162491395 0 0.8515148 0.000523249827899086 hm5C_site_2460 DeepMRMD:0.8515148;iRNA_m5C:0.000523249827899086 2461 chr2 88991300 88991300 1 + C T rs549384459 88991300 + 88991280 88991320 41 GCCGGGGGCGCGGCCTCCGGCGGAGGAGGGAACAGCTGGGA GCCGGGGGCGCGGCCTCCGGTGGAGGAGGGAACAGCTGGGA Direct Loss 0.976793867857734 0 0.9369191 0 prediction 0.953587735715468 Functional Loss - RPIA ENSG00000153574 CDS Human protein_coding chr2:88991300 chr2:88991300 synonymous SNV . 0 21 hm5C_associated_SNPs_47141 0 0 1 0 0 Cytosol 0.500231643921093 0 0.8738382 0.000463287842185078 hm5C_site_2461 DeepMRMD:0.8738382;iRNA_m5C:0.000463287842185078 2462 chr11 102218165 102218165 1 + C A rs35407100 102218165 + 102218145 102218185 41 CGGGTGGGGACGCGAGGGCCCGCGGGGGCCCACTTCCCTGA CGGGTGGGGACGCGAGGGCCAGCGGGGGCCCACTTCCCTGA Direct Loss 0.976787359740707 0 0.90589714 0 prediction 0.953574719481414 Functional Loss - BIRC2 ENSG00000110330 intronic Human protein_coding chr11:102218165 chr11:102218165 . . 0 21 hm5C_associated_SNPs_47142 0 0 1 0 0 Cytosol 0.500231643921093 0 0.81179428 0.000463287842185522 hm5C_site_2462 DeepMRMD:0.81179428;iRNA_m5C:0.000463287842185522 Body mass index 2463 chr11 396945 396945 1 + C T rs576402184 396945 + 396925 396965 41 GCCTTTGGGGCCGCTGGGTACGGGGGTGCCCAGCCCACCCC GCCTTTGGGGCCGCTGGGTATGGGGGTGCCCAGCCCACCCC Direct Loss 0.976768569990205 0 0.96386933 0 prediction 0.953537139980411 Functional Loss - PKP3 ENSG00000184363 CDS Human protein_coding chr11:396945 chr11:396945 synonymous SNV . 0 21 hm5C_associated_SNPs_47143 0 0 1 0 0 Ribosome 0.500231643921092 0 0.92773866 0.000463287842184856 hm5C_site_2463 DeepMRMD:0.92773866;iRNA_m5C:0.000463287842184856 2464 chr19 18499151 18499151 1 + C T rs1059022 18499151 + 18499131 18499171 41 ATCTCTCGGGCCGCCCTTCCCGAGGGGCTCCCCGAGGCCTC ATCTCTCGGGCCGCCCTTCCTGAGGGGCTCCCCGAGGCCTC Direct Loss 0.976751981544077 0 0.9654386 0 prediction 0.953503963088154 Functional Loss - GDF15 ENSG00000130513 CDS Human protein_coding chr19:18499151 chr19:18499151 synonymous SNV . 0 21 hm5C_associated_SNPs_47144 0 0 1 0 1 Ribosome 0.500231643921106 0 0.9308772 0.000463287842211724 hm5C_site_2464 DeepMRMD:0.9308772;iRNA_m5C:0.000463287842211724 2465 chrX 79277874 79277874 1 + C T CESC 79277874 + 79277854 79277894 41 AGGCGGAGCAGCCTGAGCTGCGGGAGAAAAAGGGCGGAGAG AGGCGGAGCAGCCTGAGCTGTGGGAGAAAAAGGGCGGAGAG Direct Loss 0.976750156818991 0 0.9087479 0 prediction 0.953500313637982 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79277874 chrX:79277874 nonsynonymous SNV 0.503 1 21 hm5C_associated_SNPs_47145 0 0 0 0 1 unknown 0.500231643921093 0 0.8174958 0.0004632878421853 hm5C_site_2465 DeepMRMD:0.8174958;iRNA_m5C:0.0004632878421853 2466 chr16 57416244 57416244 1 + C T SKCM 57416244 + 57416224 57416264 41 GACGGGCGTGACTGGTTCCTCAGGGACCAGGCTCCCCCCGA GACGGGCGTGACTGGTTCCTTAGGGACCAGGCTCCCCCCGA Direct Loss 0.976711008793964 0 0.9341136 0 prediction 0.953422017587927 Functional Loss - CX3CL1 ENSG00000006210 CDS Human protein_coding chr16:57416244 chr16:57416244 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47146 0 0 1 0 0 nucleus 0.50023163164401 0 0.8682272 0.000463263288020155 hm5C_site_2466 DeepMRMD:0.8682272;iRNA_m5C:0.000463263288020155 2467 chr6 393188 393188 1 + C T UCEC 393188 + 393168 393208 41 GGCGGCCGAGGCGGAGAGTTCGGCATGAGCGCGGTGAGCTG GGCGGCCGAGGCGGAGAGTTTGGCATGAGCGCGGTGAGCTG Direct Loss 0.976710891255296 0 0.88545525 0 prediction 0.953421782510592 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:393188 chr6:393188 synonymous SNV . 0 21 hm5C_associated_SNPs_47147 0 0 0 0 1 exosome 0.500231643996249 0 0.7709105 0.000463287992498618 hm5C_site_2467 DeepMRMD:0.7709105;iRNA_m5C:0.000463287992498618 2468 chr11 67256782 67256782 1 + C T SKCM 67256782 + 67256762 67256802 41 GCCAAGAGTCTCCGCAACATCGCGGTGGGCAAGGACCCCCT GCCAAGAGTCTCCGCAACATTGCGGTGGGCAAGGACCCCCT Direct Loss 0.976702882291994 0 0.89253604 0 prediction 0.953405764583988 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67256782 chr11:67256782 synonymous SNV . 0 21 hm5C_associated_SNPs_47148 0 0 1 0 1 Ribosome 0.500231643878768 0 0.78507208 0.000463287757536346 hm5C_site_2468 DeepMRMD:0.78507208;iRNA_m5C:0.000463287757536346 2469 chr17 45811206 45811206 1 + C T UCEC 45811206 + 45811186 45811226 41 TGAGGACTACGCGCTACCCGCGGGACTGGAGGTGTCGGGGA TGAGGACTACGCGCTACCCGTGGGACTGGAGGTGTCGGGGA Direct Loss 0.976699203632521 0 0.8876953 0 prediction 0.953398407265043 Functional Loss - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45811206 chr17:45811206 nonsynonymous SNV 0.934 2 21 hm5C_associated_SNPs_47149 0 0 0 0 0 exosome 0.500231640775952 0 0.7753906 0.000463281551903671 hm5C_site_2469 DeepMRMD:0.7753906;iRNA_m5C:0.000463281551903671 2470 chr10 8100451 8100451 1 + C T HNSC 8100451 + 8100431 8100471 41 GGCCTCGTCCTCCTCCTTGTCGGGGGGCCACGCCAGCCCGC GGCCTCGTCCTCCTCCTTGTTGGGGGGCCACGCCAGCCCGC Direct Loss 0.976690122746978 0 0.9697511 0 prediction 0.953380245493956 Functional Loss - GATA3 ENSG00000107485 CDS Human protein_coding chr10:8100451 chr10:8100451 nonsynonymous SNV 0.548 1 21 hm5C_associated_SNPs_47150 0 0 1 0 0 Cytosol 0.500231643921347 0 0.9395022 0.000463287842693338 hm5C_site_2470 DeepMRMD:0.9395022;iRNA_m5C:0.000463287842693338 2471 chr20 61442882 61442882 1 + C T UCEC 61442882 + 61442862 61442902 41 GAGCTCATGCTGGGCTTCTACGGGATCCGGCTGGAGGACCG GAGCTCATGCTGGGCTTCTATGGGATCCGGCTGGAGGACCG Direct Loss 0.976679901581202 0 0.8800378 0 prediction 0.953359803162404 Functional Loss - OGFR ENSG00000060491 CDS Human protein_coding chr20:61442882 chr20:61442882 synonymous SNV . 0 21 hm5C_associated_SNPs_47151 0 0 1 0 2 Ribosome 0.500231359674679 0 0.7600756 0.000462719349357821 hm5C_site_2471 DeepMRMD:0.7600756;iRNA_m5C:0.000462719349357821 2472 chr20 5903645 5903645 1 + C T UCEC 5903645 + 5903625 5903665 41 ACGAGGCCCAGACACCACCACGGGAGGAGCAGGCCCGACAG ACGAGGCCCAGACACCACCATGGGAGGAGCAGGCCCGACAG Direct Loss 0.976672322848054 0 0.92225015 0 prediction 0.953344645696109 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5903645 chr20:5903645 synonymous SNV . 0 21 hm5C_associated_SNPs_47152 0 0 0 0 0 exosome 0.500231637145696 0 0.8445003 0.000463274291392146 hm5C_site_2472 DeepMRMD:0.8445003;iRNA_m5C:0.000463274291392146 2473 chr19 1535363 1535363 1 + C A rs56073142 1535363 + 1535343 1535383 41 GGGGAGGGCTGGGGGGCACACGGGAGGTGGGTTCTTGCCTT GGGGAGGGCTGGGGGGCACAAGGGAGGTGGGTTCTTGCCTT Direct Loss 0.976661190455802 0 0.92732346 0 prediction 0.953322380911605 Functional Loss - PLK5 ENSG00000185988 UTR3 Human protein_coding chr19:1535363 chr19:1535363 . . 0 21 hm5C_associated_SNPs_47153 0 0 0 1 0 exosome 0.500231643921092 0 0.85464692 0.000463287842184856 hm5C_site_2473 DeepMRMD:0.85464692;iRNA_m5C:0.000463287842184856 2474 chr14 74058778 74058778 1 + C T rs544932409 74058778 + 74058758 74058798 41 TTACGCTGCGCGCGTCCCTGCGCGACGAGAAGGGCGCGCTC TTACGCTGCGCGCGTCCCTGTGCGACGAGAAGGGCGCGCTC Direct Loss 0.976654101838489 0 0.9185897 0 prediction 0.953308203676978 Functional Loss - ACOT4 ENSG00000177465 CDS Human protein_coding chr14:74058778 chr14:74058778 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_47154 0 0 0 0 0 exosome 0.500231643920175 0 0.8371794 0.000463287840349214 hm5C_site_2474 DeepMRMD:0.8371794;iRNA_m5C:0.000463287840349214 2475 chr6 22146924 22146924 1 + G A ESCA 22146924 - 22146904 22146944 41 GGCGAAGCCCAGGCGGGAGACGGCAGGAGCAGCTCAGGTAA GGCGAAGCCCAGGCGGGAGATGGCAGGAGCAGCTCAGGTAA Direct Loss 0.976552556847725 0 0.74352705 0 prediction 0.953105113695451 Functional Loss - NBAT1 ENSG00000260455;ENSG00000272168 ncRNA_exonic Human other chr6:22146924 chr6:22146924 . . 0 21 hm5C_associated_SNPs_47155 0 0 0 0 2 unknown 0.500231643923261 0 0.4870541 0.000463287846521832 hm5C_site_2475 DeepMRMD:0.4870541;iRNA_m5C:0.000463287846521832 2476 chrX 147063036 147063036 1 + C T COAD 147063036 + 147063016 147063056 41 GCGGCAACTGAGTCGAATCCCGAGAGCAGCCATCCTGGATA GCGGCAACTGAGTCGAATCCTGAGAGCAGCCATCCTGGATA Direct Loss 0.97653868916419 0 0.8846521 0 prediction 0.953077378328379 Functional Loss - FMR1NB ENSG00000176988 CDS Human protein_coding chrX:147063036 chrX:147063036 synonymous SNV . 0 21 hm5C_associated_SNPs_47156 0 0 0 0 0 exosome 0.500231643921083 0 0.7693042 0.000463287842165316 hm5C_site_2476 DeepMRMD:0.7693042;iRNA_m5C:0.000463287842165316 2477 chr7 119914737 119914737 1 + C T SKCM 119914737 + 119914717 119914757 41 TTTGCAAGGGCAGCGGCTATCGGGTGGATGCCTGTGGCCTC TTTGCAAGGGCAGCGGCTATTGGGTGGATGCCTGTGGCCTC Direct Loss 0.976526057494082 0 0.95320696 0 prediction 0.953052114988164 Functional Loss - KCND2 ENSG00000184408 CDS Human protein_coding chr7:119914737 chr7:119914737 synonymous SNV . 0 21 hm5C_associated_SNPs_47157 0 0 0 0 0 exosome 0.500231647356282 0 0.90641392 0.000463294712564011 hm5C_site_2477 DeepMRMD:0.90641392;iRNA_m5C:0.000463294712564011 2478 chr1 158325689 158325689 1 + C T HNSC 158325689 + 158325669 158325709 41 GCAGCTTGTGTGCCATGTCTCAGGATTCTACCCAAAGCCCG GCAGCTTGTGTGCCATGTCTTAGGATTCTACCCAAAGCCCG Direct Loss 0.976524789369344 0 0.9167497 0 prediction 0.953049578738689 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325689 chr1:158325689 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_47158 0 0 0 0 1 exosome 0.500231643921092 0 0.8334994 0.000463287842184856 hm5C_site_2478 DeepMRMD:0.8334994;iRNA_m5C:0.000463287842184856 2479 chr17 78219973 78219973 1 + C T UCEC 78219973 + 78219953 78219993 41 GACAGCCGTGAACGCTCAGTCGGGGGTGTGCACCCCGGCGG GACAGCCGTGAACGCTCAGTTGGGGGTGTGCACCCCGGCGG Direct Loss 0.976487499772932 0 0.9553478 0 prediction 0.952974999545865 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219973 chr17:78219973 nonsynonymous SNV 0.594 4 21 hm5C_associated_SNPs_47159 0 0 1 0 2 chromatin 0.500255823134379 0 0.9106956 0.000511646268757326 hm5C_site_2479 DeepMRMD:0.9106956;iRNA_m5C:0.000511646268757326 2480 chr19 8550572 8550572 1 + C T rs76937953 8550572 + 8550552 8550592 41 GCCGGCATGGAGCGCATGGGCGCGGGCCTGGGCCACGGCAT GCCGGCATGGAGCGCATGGGTGCGGGCCTGGGCCACGGCAT Direct Loss 0.97645637566316 0 0.87091684 0 prediction 0.952912751326321 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8550572 chr19:8550572 synonymous SNV . 0 21 hm5C_associated_SNPs_47160 0 0 1 0 1 Nucleus 0.500231643921093 0 0.74183368 0.000463287842186855 hm5C_site_2480 DeepMRMD:0.74183368;iRNA_m5C:0.000463287842186855 2481 chr13 49794672 49794672 1 + C T COAD 49794672 + 49794652 49794692 41 TGATGCTGATCGGGCGCTACCGGGACATGCGGACCACCACC TGATGCTGATCGGGCGCTACTGGGACATGCGGACCACCACC Direct Loss 0.976450595418196 0 0.9517601 0 prediction 0.952901190836392 Functional Loss - MLNR ENSG00000102539 CDS Human protein_coding chr13:49794672 chr13:49794672 nonsynonymous SNV 0.984 3 21 hm5C_associated_SNPs_47161 0 0 0 0 0 exosome 0.500231643920853 0 0.9035202 0.000463287841706572 hm5C_site_2481 DeepMRMD:0.9035202;iRNA_m5C:0.000463287841706572 2482 chr11 118889911 118889911 1 + C T rs139864805 118889911 + 118889891 118889931 41 AATGGCAGGTACACGGCCGACGGGAAAGAGGTGCTGGAGTA AATGGCAGGTACACGGCCGATGGGAAAGAGGTGCTGGAGTA Direct Loss 0.976426119146266 0 0.8759381 0 prediction 0.952852238292531 Functional Loss - TRAPPC4 ENSG00000196655 CDS Human protein_coding chr11:118889911 chr11:118889911 synonymous SNV . 0 21 hm5C_associated_SNPs_47162 0 0 1 0 2 Ribosome 0.500231643921092 0 0.7518762 0.000463287842184856 hm5C_site_2482 DeepMRMD:0.7518762;iRNA_m5C:0.000463287842184856 2483 chr2 26467653 26467653 1 + C T rs72809668 26467653 + 26467633 26467673 41 GGCCGAAAGGTCGTATTCTCCGGGGGAGGACGGGGGCCCGG GGCCGAAAGGTCGTATTCTCTGGGGGAGGACGGGGGCCCGG Direct Loss 0.976388704378061 0 0.92465925 0 prediction 0.952777408756122 Functional Loss - HADHB ENSG00000138029 intronic Human protein_coding chr2:26467653 chr2:26467653 . . 0 21 hm5C_associated_SNPs_47163 2 0 0 0 0 Ribosome 0.500207222594643 0 0.8493185 0.000414445189285573 hm5C_site_2483 DeepMRMD:0.8493185;iRNA_m5C:0.000414445189285573 Mitochondrial trifunctional protein deficiency Mitochondrial trifunctional protein deficiency 2484 chr21 38390425 38390425 1 + C T rs147162537 38390425 + 38390405 38390445 41 CAACCAAGGGCAGCGATCCTCAGGAGGGGGTGACCACTGGG CAACCAAGGGCAGCGATCCTTAGGAGGGGGTGACCACTGGG Direct Loss 0.976381236834761 0 0.94316304 0 prediction 0.952762473669521 Functional Loss - RIPPLY3 ENSG00000183145 CDS Human protein_coding chr21:38390425 chr21:38390425 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47164 0 0 1 0 0 Nucleus 0.500231643920834 0 0.88632608 0.000463287841667492 hm5C_site_2484 DeepMRMD:0.88632608;iRNA_m5C:0.000463287841667492 2485 chr18 56887555 56887555 1 + C T UCEC 56887555 + 56887535 56887575 41 TGGTCCTCTGCCTGGCGCCCCGGGGGCGAGCGGTCCCGCTG TGGTCCTCTGCCTGGCGCCCTGGGGGCGAGCGGTCCCGCTG Direct Loss 0.976371785421021 0 0.917357 0 prediction 0.952743570842041 Functional Loss - GRP ENSG00000134443 CDS Human protein_coding chr18:56887555 chr18:56887555 nonsynonymous SNV 0.933 2 21 hm5C_associated_SNPs_47165 0 0 0 0 1 unknown 0.500231643921091 0 0.834714 0.000463287842182414 hm5C_site_2485 DeepMRMD:0.834714;iRNA_m5C:0.000463287842182414 2486 chr16 23197757 23197757 1 + C T BLCA 23197757 + 23197737 23197777 41 GGCCGTCTGCGCCGCCTCCTCTGGATCGGGTTCACACTGAC GGCCGTCTGCGCCGCCTCCTTTGGATCGGGTTCACACTGAC Direct Loss 0.976358507513026 0 0.52537966 0 prediction 0.952717015026052 Functional Loss - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23197757 chr16:23197757 synonymous SNV . 0 21 hm5C_associated_SNPs_47166 0 0 0 0 0 exosome 0.500231643806379 0 0.0507593200000001 0.000463287612758601 hm5C_site_2486 DeepMRMD:0.0507593200000001;iRNA_m5C:0.000463287612758601 Red cell distribution width 2487 chr6 150070908 150070908 1 + C G rs575924664 150070908 + 150070888 150070928 41 AGCGGCGGCGACGGCAGTAACAGCGGCAGCTACAGCGGGGA AGCGGCGGCGACGGCAGTAAGAGCGGCAGCTACAGCGGGGA Direct Loss 0.976315887124942 0 0.8988038 0 prediction 0.952631774249885 Functional Loss - PCMT1 ENSG00000120265 CDS Human protein_coding chr6:150070908 chr6:150070908 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_47167 0 0 1 0 0 Ribosome 0.500231643914043 0 0.7976076 0.000463287828086356 hm5C_site_2487 DeepMRMD:0.7976076;iRNA_m5C:0.000463287828086356 2488 chr19 53719129 53719129 1 + C T rs141088965 53719129 + 53719109 53719149 41 AGGGGAAAATCACTTGAACCCGGGAGACGGAGGTTGCAGTG AGGGGAAAATCACTTGAACCTGGGAGACGGAGGTTGCAGTG Direct Loss 0.976301606834686 0 0.9164152 0 prediction 0.952603213669372 Functional Loss - ZNF818P ENSG00000269001;ENSG00000267809 intergenic Human other chr19:53719129 chr19:53719129 . . 0 21 hm5C_associated_SNPs_47168 0 0 0 0 0 unknown 0.500231643921092 0 0.8328304 0.000463287842184856 hm5C_site_2488 DeepMRMD:0.8328304;iRNA_m5C:0.000463287842184856 2489 chr15 84909433 84909433 1 + C T UCEC 84909433 + 84909413 84909453 41 TGCAGGAGCTGGAGAGGCTGCGGGAGCTGGAGAGGCTGCGG TGCAGGAGCTGGAGAGGCTGTGGGAGCTGGAGAGGCTGCGG Direct Loss 0.976293835012894 0 0.9130931 0 prediction 0.952587670025787 Functional Loss - GOLGA6L4 ENSG00000184206 CDS Human protein_coding chr15:84909433 chr15:84909433 nonsynonymous SNV 0.207 1 21 hm5C_associated_SNPs_47169 0 0 0 0 1 exosome 0.500231643921093 0 0.8261862 0.0004632878421853 hm5C_site_2489 DeepMRMD:0.8261862;iRNA_m5C:0.0004632878421853 2490 chr10 54074385 54074385 1 + C A LUAD 54074385 + 54074365 54074405 41 CTCTGCAGTCAGCGCCGCGCCGGGAATCCTGTACCCGGGCG CTCTGCAGTCAGCGCCGCGCAGGGAATCCTGTACCCGGGCG Direct Loss 0.976233316631566 0 0.879871 0 prediction 0.952466633263133 Functional Loss - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074385 chr10:54074385 nonsynonymous SNV 0.330 2 21 hm5C_associated_SNPs_47170 0 0 1 0 1 exosome 0.500231643804975 0 0.759742 0.000463287609949514 hm5C_site_2490 DeepMRMD:0.759742;iRNA_m5C:0.000463287609949514 2491 chr7 121944152 121944152 1 + C T SARC 121944152 + 121944132 121944172 41 CAGGTCGCTGCAGCTGAATGCGGGAGCCGAGGGCACCGCCG CAGGTCGCTGCAGCTGAATGTGGGAGCCGAGGGCACCGCCG Direct Loss 0.976219877170371 0 0.94667494 0 prediction 0.952439754340743 Functional Loss - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121944152 chr7:121944152 nonsynonymous SNV 0.473 0 21 hm5C_associated_SNPs_47171 0 0 0 0 0 exosome 0.500215223461854 0 0.89334988 0.000430446923707084 hm5C_site_2491 DeepMRMD:0.89334988;iRNA_m5C:0.000430446923707084 2492 chr14 53019946 53019946 1 + C T rs112566626 53019946 + 53019926 53019966 41 TCCACGCCCGGCGGGGGCAGCGGAGGCGGAGGCGCCGTCGC TCCACGCCCGGCGGGGGCAGTGGAGGCGGAGGCGCCGTCGC Direct Loss 0.976212554339658 0 0.9369713 0 prediction 0.952425108679317 Functional Loss - GPR137C ENSG00000180998 CDS Human protein_coding chr14:53019946 chr14:53019946 synonymous SNV . 0 21 hm5C_associated_SNPs_47172 0 0 0 0 0 chromatin 0.500231643906353 0 0.8739426 0.000463287812705993 hm5C_site_2492 DeepMRMD:0.8739426;iRNA_m5C:0.000463287812705993 2493 chr8 8559933 8559933 1 + C T LUSC 8559933 + 8559913 8559953 41 GGACGCCGGTGGTGATGACGCTGGGCATGGTGTTGGCGCCC GGACGCCGGTGGTGATGACGTTGGGCATGGTGTTGGCGCCC Direct Loss 0.976197353553158 0 0.8966755 0 prediction 0.952394707106317 Functional Loss - CLDN23 ENSG00000253958 CDS Human protein_coding chr8:8559933 chr8:8559933 synonymous SNV . 0 21 hm5C_associated_SNPs_47173 0 0 0 0 0 Endoplasmic reticulum 0.500231670907447 0 0.793351 0.000463341814894713 hm5C_site_2493 DeepMRMD:0.793351;iRNA_m5C:0.000463341814894713 2494 chr16 4382351 4382351 1 + C A rs34543395 4382351 + 4382331 4382371 41 TCCGGGCGGCAAGAGAGAAGCGGGAGAGGACGCTGGGTGTG TCCGGGCGGCAAGAGAGAAGAGGGAGAGGACGCTGGGTGTG Direct Loss 0.976171988014598 0 0.89743274 0 prediction 0.952343976029197 Functional Loss - GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4382351 chr16:4382351 synonymous SNV . 0 21 hm5C_associated_SNPs_47174 2 0 1 0 0 Endoplasmic reticulum 0.500231714894969 0 0.79486548 0.000463429789937742 hm5C_site_2494 DeepMRMD:0.79486548;iRNA_m5C:0.000463429789937742 Nephronophthisis Nephronophthisis 2495 chr6 27777959 27777959 1 + C T BLCA 27777959 + 27777939 27777979 41 GCTCCGGCCACCGGCGGTGTCAAGAAGCCCCATCGCTATCG GCTCCGGCCACCGGCGGTGTTAAGAAGCCCCATCGCTATCG Direct Loss 0.976170523755748 0 0.889964 0 prediction 0.952341047511496 Functional Loss - HIST1H3H ENSG00000203813 CDS Human other chr6:27777959 chr6:27777959 synonymous SNV . 0 21 hm5C_associated_SNPs_47175 0 0 1 0 0 cytosol 0.500231645260332 0 0.779928 0.000463290520663628 hm5C_site_2495 DeepMRMD:0.779928;iRNA_m5C:0.000463290520663628 2496 chr15 68119245 68119245 1 + C A rs202009740 68119245 + 68119225 68119265 41 AGCTAGTGGCCCGGCGGGCCCAGGAGGGCCCGGTGGCGGCG AGCTAGTGGCCCGGCGGGCCAAGGAGGGCCCGGTGGCGGCG Direct Loss 0.976162872008897 0 0.90281117 0 prediction 0.952325744017795 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68119245 chr15:68119245 nonsynonymous SNV 0.224 3 21 hm5C_associated_SNPs_47176 0 0 0 0 1 exosome 0.500231643921092 0 0.80562234 0.000463287842184412 hm5C_site_2496 DeepMRMD:0.80562234;iRNA_m5C:0.000463287842184412 2497 chr13 28367938 28367938 1 + C G LUSC 28367938 + 28367918 28367958 41 AACCATCGTGGCGGCGGCGGCGGGGGTGCCGGTGGTGGCGG AACCATCGTGGCGGCGGCGGGGGGGGTGCCGGTGGTGGCGG Direct Loss 0.976089578189558 0 0.92212075 0 prediction 0.952179156379116 Functional Loss - GSX1 ENSG00000169840 CDS Human protein_coding chr13:28367938 chr13:28367938 synonymous SNV . 0 21 hm5C_associated_SNPs_47177 0 0 0 0 0 unknown 0.500231646733826 0 0.8442415 0.000463293467651171 hm5C_site_2497 DeepMRMD:0.8442415;iRNA_m5C:0.000463293467651171 2498 chr22 32756489 32756489 1 + G A UCEC 32756489 - 32756469 32756509 41 AATCCAAGCTCTGTGGTCAGCTGGATCTTCCCTTTGCAGTG AATCCAAGCTCTGTGGTCAGTTGGATCTTCCCTTTGCAGTG Direct Loss 0.976069244691556 0 0.1484057 0 prediction 0.952138489383111 Functional Loss - RFPL3 ENSG00000128276 CDS Human protein_coding chr22:32756489 chr22:32756489 synonymous SNV . 0 21 hm5C_associated_SNPs_47178 0 0 0 0 0 exosome 0.50023186617123 0 0 0.000463732342459888 hm5C_site_2498 DeepMRMD:0;iRNA_m5C:0.000463732342459888 2499 chr1 156703888 156703888 1 + C T rs73000801 156703888 + 156703868 156703908 41 GTGAGGAGCTTCTGCTTCCACTGGAGAACCCGTGTCAGGGC GTGAGGAGCTTCTGCTTCCATTGGAGAACCCGTGTCAGGGC Direct Loss 0.976048407862913 0 0.24450949 0 prediction 0.952096815725825 Functional Loss - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156703888 chr1:156703888 synonymous SNV . 0 21 hm5C_associated_SNPs_47179 0 0 1 0 1 chromatin 0.500231644220366 0 0 0.000463288440731846 hm5C_site_2499 DeepMRMD:0;iRNA_m5C:0.000463288440731846 2500 chr3 122296630 122296630 1 + C T CESC 122296630 + 122296610 122296650 41 AGCCGGACGAGATCGGGAGGCGGGGAGCGTGCTGCCGGCCG AGCCGGACGAGATCGGGAGGTGGGGAGCGTGCTGCCGGCCG Direct Loss 0.976045095107556 0 0.9059739 0 prediction 0.952090190215111 Functional Loss - PARP15 ENSG00000173200 CDS Human protein_coding chr3:122296630 chr3:122296630 nonsynonymous SNV 0.025 0 21 hm5C_associated_SNPs_47180 0 0 0 0 1 exosome 0.50023164392075 0 0.8119478 0.000463287841499849 hm5C_site_2500 DeepMRMD:0.8119478;iRNA_m5C:0.000463287841499849 2501 chr2 177036741 177036741 1 + C T COAD 177036741 + 177036721 177036761 41 GCGAGCAACGGCGGCGGCTTCGCCAGCGCCAACTTGCAGGG GCGAGCAACGGCGGCGGCTTTGCCAGCGCCAACTTGCAGGG Direct Loss 0.976026067057093 0 0.6263797 0 prediction 0.952052134114186 Functional Loss - HOXD3 ENSG00000128652 CDS Human protein_coding chr2:177036741 chr2:177036741 synonymous SNV . 0 21 hm5C_associated_SNPs_47181 0 0 0 0 0 exosome 0.500231643354662 0 0.2527594 0.000463286709323718 hm5C_site_2501 DeepMRMD:0.2527594;iRNA_m5C:0.000463286709323718 2502 chr5 2755291 2755291 1 + C T PRAD 2755291 + 2755271 2755311 41 ACTGAGAAGGCCGGGGCGCTCGCCGGGCGCGGCGCCGTCCT ACTGAGAAGGCCGGGGCGCTTGCCGGGCGCGGCGCCGTCCT Direct Loss 0.975993626047902 0 0.8922839 0 prediction 0.951987252095805 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2755291 chr5:2755291 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_47182 0 0 0 0 0 exosome 0.500231643921093 0 0.7845678 0.000463287842185078 hm5C_site_2502 DeepMRMD:0.7845678;iRNA_m5C:0.000463287842185078 2503 chr2 150187042 150187042 1 + C A rs572600209 150187042 + 150187022 150187062 41 GGGCGGCGGCCAGTGCCCGGCGCGAGTGGGAGTGGCGCGCG GGGCGGCGGCCAGTGCCCGGAGCGAGTGGGAGTGGCGCGCG Direct Loss 0.97592169224181 0 0.78597176 0 prediction 0.951843384483621 Functional Loss - LYPD6 ENSG00000187123 intronic Human protein_coding chr2:150187042 chr2:150187042 . . 0 21 hm5C_associated_SNPs_47183 0 0 0 0 0 Cytosol 0.500324171941739 0 0.57194352 0.000648343883477454 hm5C_site_2503 DeepMRMD:0.57194352;iRNA_m5C:0.000648343883477454 2504 chr19 58117412 58117412 1 + C T rs143267609 58117412 + 58117392 58117432 41 CCCTTCACGTTTGGGGAAGTCGGGAGGGACTTTTCAGCCAC CCCTTCACGTTTGGGGAAGTTGGGAGGGACTTTTCAGCCAC Direct Loss 0.975911661980596 0 0.9242685 0 prediction 0.951823323961192 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58117412 chr19:58117412 synonymous SNV . 0 21 hm5C_associated_SNPs_47184 0 0 1 0 0 Nucleus 0.50023164393488 0 0.848537 0.000463287869760132 hm5C_site_2504 DeepMRMD:0.848537;iRNA_m5C:0.000463287869760132 2505 chr20 2375157 2375157 1 + C A LUAD 2375157 + 2375137 2375177 41 ATGGCGCTGCCCACCACACCCAGGAGTACCCCTGCCCTGAG ATGGCGCTGCCCACCACACCAAGGAGTACCCCTGCCCTGAG Direct Loss 0.97586583376286 0 0.9494692 0 prediction 0.95173166752572 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2375157 chr20:2375157 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_47185 0 0 0 0 1 exosome 0.500231642087351 0 0.8989384 0.000463284174702316 hm5C_site_2505 DeepMRMD:0.8989384;iRNA_m5C:0.000463284174702316 2506 chr1 44437346 44437346 1 + C G BLCA 44437346 + 44437326 44437366 41 GTCCAGATACAGGGAAGACTCAGGATGAGGGTGCCCGGGCT GTCCAGATACAGGGAAGACTGAGGATGAGGGTGCCCGGGCT Direct Loss 0.975858048175525 0 0.90060437 0 prediction 0.95171609635105 Functional Loss - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44437346 chr1:44437346 nonsynonymous SNV 0.184 1 21 hm5C_associated_SNPs_47186 0 0 1 0 0 nucleolus 0.500231643921092 0 0.80120874 0.000463287842184856 hm5C_site_2506 DeepMRMD:0.80120874;iRNA_m5C:0.000463287842184856 2507 chr16 84328610 84328610 1 + C T CESC 84328610 + 84328590 84328630 41 GGCGTGGGGCCGGGCAGCTGCAGGAGGCAGATCATCCGGGC GGCGTGGGGCCGGGCAGCTGTAGGAGGCAGATCATCCGGGC Direct Loss 0.975844338100045 0 0.94090116 0 prediction 0.95168867620009 Functional Loss - WFDC1 ENSG00000103175 CDS Human protein_coding chr16:84328610 chr16:84328610 synonymous SNV . 0 21 hm5C_associated_SNPs_47187 0 0 0 0 0 exosome 0.500231643921092 0 0.88180232 0.000463287842184856 hm5C_site_2507 DeepMRMD:0.88180232;iRNA_m5C:0.000463287842184856 2508 chr8 22447179 22447179 1 + C A UCEC 22447179 + 22447159 22447199 41 TCAAGATGCTGCAGGAAAATCGCGAGGGACGGGCGGCCCCC TCAAGATGCTGCAGGAAAATAGCGAGGGACGGGCGGCCCCC Direct Loss 0.975837184235461 0 0.8981024 0 prediction 0.951674368470923 Functional Loss - PDLIM2 ENSG00000120913;ENSG00000248235 CDS Human other chr8:22447179 chr8:22447179 nonsynonymous SNV 0.944 0 21 hm5C_associated_SNPs_47188 0 0 1 0 2 Nucleus 0.500231643921529 0 0.7962048 0.000463287843057492 hm5C_site_2508 DeepMRMD:0.7962048;iRNA_m5C:0.000463287843057492 2509 chr1 26607289 26607289 1 + C A PAAD 26607289 + 26607269 26607309 41 AGAGCGAGGTGACCCGAATCCTGGATGGGAAGCGCATCCAA AGAGCGAGGTGACCCGAATCATGGATGGGAAGCGCATCCAA Direct Loss 0.975825604535047 0 0.39125675 0 prediction 0.951651209070094 Functional Loss - SH3BGRL3 ENSG00000142669 CDS Human protein_coding chr1:26607289 chr1:26607289 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_47189 0 0 1 0 1 Ribosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_2509 DeepMRMD:0;iRNA_m5C:0.000463287842184856 2510 chr20 30193328 30193328 1 + C G BLCA 30193328 + 30193308 30193348 41 GTGGCCATCTCGCGCTGCGCCGGGGGCGCCGGGGCGCGCCT GTGGCCATCTCGCGCTGCGCGGGGGGCGCCGGGGCGCGCCT Direct Loss 0.975766551318449 0 0.93958485 0 prediction 0.951533102636897 Functional Loss - ID1 ENSG00000125968 CDS Human protein_coding chr20:30193328 chr20:30193328 synonymous SNV . 0 21 hm5C_associated_SNPs_47190 0 0 1 0 0 Endoplasmic reticulum 0.500231643921043 0 0.8791697 0.000463287842086713 hm5C_site_2510 DeepMRMD:0.8791697;iRNA_m5C:0.000463287842086713 2511 chrX 124454138 124454138 1 + C A rs760758732 124454138 + 124454118 124454158 41 TCGGGCCATTGTGGCCGACCCGCGGGTGCCCCGTGCCATTA TCGGGCCATTGTGGCCGACCAGCGGGTGCCCCGTGCCATTA Direct Loss 0.975766550135168 0 0.907854 0 prediction 0.951533100270336 Functional Loss - TEX13C ENSG00000263886;ENSG00000213489 intergenic Human other chrX:124454138 chrX:124454138 . . 0 21 hm5C_associated_SNPs_47191 0 0 0 0 0 unknown 0.500231643921045 0 0.815708 0.000463287842090931 hm5C_site_2511 DeepMRMD:0.815708;iRNA_m5C:0.000463287842090931 2512 chr17 72368512 72368512 1 + C T rs143741049 72368512 + 72368492 72368532 41 TGTACGTGGCCCCTGTCCACCGGGACTGGAGGGTCCACCTG TGTACGTGGCCCCTGTCCACTGGGACTGGAGGGTCCACCTG Direct Loss 0.975762736727453 0 0.8913716 0 prediction 0.951525473454905 Functional Loss - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72368512 chr17:72368512 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_47192 0 0 0 0 0 exosome 0.500231643921092 0 0.7827432 0.000463287842184412 hm5C_site_2512 DeepMRMD:0.7827432;iRNA_m5C:0.000463287842184412 2513 chr5 172110833 172110833 1 + C A rs142447086 172110833 + 172110813 172110853 41 CTTCGTGGAGGTGGGCCGTCCGGGGCTGGCGGCGCCCGGCG CTTCGTGGAGGTGGGCCGTCAGGGGCTGGCGGCGCCCGGCG Direct Loss 0.975744240654164 0 0.9251553 0 prediction 0.951488481308328 Functional Loss - NEURL1B ENSG00000214357 CDS Human protein_coding chr5:172110833 chr5:172110833 nonsynonymous SNV 0.340 0 21 hm5C_associated_SNPs_47193 0 0 1 0 0 nucleus 0.500231643921092 0 0.8503106 0.000463287842184856 hm5C_site_2513 DeepMRMD:0.8503106;iRNA_m5C:0.000463287842184856 2514 chr5 121187857 121187857 1 + C T LUAD 121187857 + 121187837 121187877 41 GGCCCGCCGCCGGCCCCTCTCGGGTGCGCCAGAACTTCCAC GGCCCGCCGCCGGCCCCTCTTGGGTGCGCCAGAACTTCCAC Direct Loss 0.975737748858561 0 0.9656241 0 prediction 0.951475497717122 Functional Loss - FTMT ENSG00000181867 CDS Human protein_coding chr5:121187857 chr5:121187857 nonsynonymous SNV 0.145 3 21 hm5C_associated_SNPs_47194 0 0 1 0 0 unknown 0.500232091484926 0 0.9312482 0.000464182969851956 hm5C_site_2514 DeepMRMD:0.9312482;iRNA_m5C:0.000464182969851956 2515 chr16 56966267 56966267 1 + C G CESC 56966267 + 56966247 56966287 41 GGCTGGAGTGTGGGCCACCTCAAGGCCCACCTGAGCCGCGT GGCTGGAGTGTGGGCCACCTGAAGGCCCACCTGAGCCGCGT Direct Loss 0.975706690020904 0 0.86656773 0 prediction 0.951413380041807 Functional Loss - HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966267 chr16:56966267 synonymous SNV . 0 21 hm5C_associated_SNPs_47195 0 0 1 0 1 Ribosome 0.500231643921126 0 0.73313546 0.000463287842251692 hm5C_site_2515 DeepMRMD:0.73313546;iRNA_m5C:0.000463287842251692 2516 chr5 23526883 23526883 1 + C A UCEC 23526883 + 23526863 23526903 41 GAGTGTGGGCGGGGCTTTAGCTGGAAGTCACACCTCCTCAT GAGTGTGGGCGGGGCTTTAGATGGAAGTCACACCTCCTCAT Direct Loss 0.975639765816042 0 0.8590312 0 prediction 0.951279531632085 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23526883 chr5:23526883 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47196 0 0 0 0 0 unknown 0.500231637749099 0 0.7180624 0.000463275498197246 hm5C_site_2516 DeepMRMD:0.7180624;iRNA_m5C:0.000463275498197246 2517 chr11 9492905 9492905 1 + C T SKCM 9492905 + 9492885 9492925 41 TCAGGGAATGACAGAGTTTCCTGGAGGAGGGATGGAGGCGC TCAGGGAATGACAGAGTTTCTTGGAGGAGGGATGGAGGCGC Direct Loss 0.975595427859115 0 0.74227977 0 prediction 0.95119085571823 Functional Loss - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9492905 chr11:9492905 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_47197 0 0 1 0 2 chromatin 0.500231643921094 0 0.48455954 0.000463287842188409 hm5C_site_2517 DeepMRMD:0.48455954;iRNA_m5C:0.000463287842188409 2518 chr9 86238047 86238047 1 + C T rs116949863 86238047 + 86238027 86238067 41 GCCGGGTAGGCCGGGGCCGGCGGGGCCCGGAAGGCGACGGG GCCGGGTAGGCCGGGGCCGGTGGGGCCCGGAAGGCGACGGG Direct Loss 0.975589437123235 0 0.9036675 0 prediction 0.95117887424647 Functional Loss - IDNK ENSG00000148057 UTR5 Human protein_coding chr9:86238047 chr9:86238047 . . 0 21 hm5C_associated_SNPs_47198 0 0 0 0 2 Nucleus 0.500231643921044 0 0.807335 0.000463287842088933 hm5C_site_2518 DeepMRMD:0.807335;iRNA_m5C:0.000463287842088933 2519 chr2 220100508 220100508 1 + C T UCEC 220100508 + 220100488 220100528 41 AGAAGGCAGCCCGGCGGCAACGGGAGGAACAGCAGCAGAGG AGAAGGCAGCCCGGCGGCAATGGGAGGAACAGCAGCAGAGG Direct Loss 0.975546826638443 0 0.9076017 0 prediction 0.951093653276886 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220100508 chr2:220100508 nonsynonymous SNV 0.893 2 21 hm5C_associated_SNPs_47199 0 0 1 0 2 chromatin 0.500231643921099 0 0.8152034 0.000463287842198845 hm5C_site_2519 DeepMRMD:0.8152034;iRNA_m5C:0.000463287842198845 2520 chr6 26502012 26502012 1 + C A rs61732157 26502012 + 26501992 26502032 41 CCGAGCAGATGCCCGAGTACCGCGGGCGGGCGACGCTGGTC CCGAGCAGATGCCCGAGTACAGCGGGCGGGCGACGCTGGTC Direct Loss 0.975536636094988 0 0.8980372 0 prediction 0.951073272189976 Functional Loss - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26502012 chr6:26502012 nonsynonymous SNV 0.023 1 21 hm5C_associated_SNPs_47200 0 0 0 0 0 nucleoplasm 0.500231643921315 0 0.7960744 0.000463287842629168 hm5C_site_2520 DeepMRMD:0.7960744;iRNA_m5C:0.000463287842629168 2521 chr18 12224119 12224119 1 + C T rs544742093 12224119 + 12224099 12224139 41 AGGCGGACGTTGCGGTAAGCCGGGATCGCACCATTGCACTC AGGCGGACGTTGCGGTAAGCTGGGATCGCACCATTGCACTC Direct Loss 0.975534798494927 0 0.8387323 0 prediction 0.951069596989855 Functional Loss - C18orf61 ENSG00000267733 downstream Human transcribed_processed_pseudogene chr18:12224119 chr18:12224119 . . 0 21 hm5C_associated_SNPs_47201 0 0 0 0 0 unknown 0.500231643921092 0 0.6774646 0.000463287842184856 hm5C_site_2521 DeepMRMD:0.6774646;iRNA_m5C:0.000463287842184856 2522 chr6 114181329 114181329 1 + C A rs45535333 114181329 + 114181309 114181349 41 GAGGCGCCCGCTGCCGAAGGCGGCAAGGACGAGGCCGCCGG GAGGCGCCCGCTGCCGAAGGAGGCAAGGACGAGGCCGCCGG Direct Loss 0.975469697146344 0 0.8853813 0 prediction 0.950939394292688 Functional Loss - MARCKS ENSG00000155130 CDS Human other chr6:114181329 chr6:114181329 synonymous SNV . 0 21 hm5C_associated_SNPs_47202 0 0 1 0 0 Ribosome 0.500231757274755 0 0.7707626 0.000463514549510213 hm5C_site_2522 DeepMRMD:0.7707626;iRNA_m5C:0.000463514549510213 2523 chr11 27016314 27016314 1 + C A LUSC 27016314 + 27016294 27016334 41 GCCTGCTGAGCCTCACCCTGCGGGAGGAGTTCACCGTGCTG GCCTGCTGAGCCTCACCCTGAGGGAGGAGTTCACCGTGCTG Direct Loss 0.97544507513164 0 0.9089205 0 prediction 0.95089015026328 Functional Loss - FIBIN ENSG00000176971 CDS Human protein_coding chr11:27016314 chr11:27016314 synonymous SNV . 0 21 hm5C_associated_SNPs_47203 0 0 0 0 0 exosome 0.50023164405792 0 0.817841 0.000463288115840843 hm5C_site_2523 DeepMRMD:0.817841;iRNA_m5C:0.000463288115840843 2524 chr5 176863445 176863445 1 + C T UCEC 176863445 + 176863425 176863465 41 GGTGTCGTGGGGGCAGTGCCCGCGAGGTGAAGGAGCACCCC GGTGTCGTGGGGGCAGTGCCTGCGAGGTGAAGGAGCACCCC Direct Loss 0.975444767760867 0 0.76375663 0 prediction 0.950889535521733 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863445 chr5:176863445 nonsynonymous SNV 0.349 1 21 hm5C_associated_SNPs_47204 0 0 1 0 2 Cytosol 0.500231643643327 0 0.52751326 0.00046328728665368 hm5C_site_2524 DeepMRMD:0.52751326;iRNA_m5C:0.00046328728665368 2525 chrX 51075949 51075949 1 + C G HNSC 51075949 + 51075929 51075969 41 AGCAGCCGGTACCCGGACCGCTGGATCGTGCCGGGCGGGGG AGCAGCCGGTACCCGGACCGGTGGATCGTGCCGGGCGGGGG Direct Loss 0.975438312900423 0 0.16298693 0 prediction 0.950876625800845 Functional Loss - NUDT10 ENSG00000122824 CDS Human protein_coding chrX:51075949 chrX:51075949 synonymous SNV . 0 21 hm5C_associated_SNPs_47205 0 0 0 0 0 exosome 0.500231584150622 0 0 0.000463168301244599 hm5C_site_2525 DeepMRMD:0;iRNA_m5C:0.000463168301244599 2526 chr3 5024628 5024628 1 + C T SKCM 5024628 + 5024608 5024648 41 TGGCCAAGCACGAGAACACTCGGGACCTGAAGTCTTCGCAG TGGCCAAGCACGAGAACACTTGGGACCTGAAGTCTTCGCAG Direct Loss 0.975436493763851 0 0.9466542 0 prediction 0.950872987527702 Functional Loss - BHLHE40 ENSG00000134107 CDS Human protein_coding chr3:5024628 chr3:5024628 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_47206 0 0 1 0 0 chromatin 0.500231643921094 0 0.8933084 0.000463287842187743 hm5C_site_2526 DeepMRMD:0.8933084;iRNA_m5C:0.000463287842187743 2527 chr1 156255142 156255142 1 + C T rs79735386 156255142 + 156255122 156255162 41 GGAAGGTGGGGCCGAATCCCCGGGAGCTGAGTCCCTCAGAG GGAAGGTGGGGCCGAATCCCTGGGAGCTGAGTCCCTCAGAG Direct Loss 0.975384818964718 0 0.90044045 0 prediction 0.950769637929436 Functional Loss - TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255142 chr1:156255142 nonsynonymous SNV 0.021 0 21 hm5C_associated_SNPs_47207 0 0 1 0 0 cytosol 0.500231643921092 0 0.8008809 0.000463287842184856 hm5C_site_2527 DeepMRMD:0.8008809;iRNA_m5C:0.000463287842184856 2528 chr11 109294765 109294765 1 + C T HNSC 109294765 + 109294745 109294785 41 CCCGGCTGGAGAGGCAGCCCCGGGACTCTCCCTTCTGCGCC CCCGGCTGGAGAGGCAGCCCTGGGACTCTCCCTTCTGCGCC Direct Loss 0.975382944234485 0 0.9350612 0 prediction 0.95076588846897 Functional Loss - C11orf87 ENSG00000185742 CDS Human protein_coding chr11:109294765 chr11:109294765 nonsynonymous SNV 0.987 1 21 hm5C_associated_SNPs_47208 0 0 0 0 0 exosome 0.500231643920783 0 0.8701224 0.000463287841565796 hm5C_site_2528 DeepMRMD:0.8701224;iRNA_m5C:0.000463287841565796 2529 chr18 657919 657919 1 + C T PAAD 657919 + 657899 657939 41 ACCGGCACCCTGTCGGTATTCGGCATGCAGGCGCGCTACAG ACCGGCACCCTGTCGGTATTTGGCATGCAGGCGCGCTACAG Direct Loss 0.975353783908018 0 0.5150913 0 prediction 0.950707567816035 Functional Loss - TYMS;TYMSOS ENSG00000176890;ENSG00000176912 CDS Human other chr18:657919 chr18:657919 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_47209 0 0 1 0 1 unknown 0.500231643921092 0 0.0301826000000001 0.00046328784218419 hm5C_site_2529 DeepMRMD:0.0301826000000001;iRNA_m5C:0.00046328784218419 2530 chr5 149563163 149563163 1 + C A LUAD 149563163 + 149563143 149563183 41 CCACCCCAGCCGGGCCATCCCTGGGGGGCCTGTGTCCCAGC CCACCCCAGCCGGGCCATCCATGGGGGGCCTGTGTCCCAGC Direct Loss 0.97535297649662 0 0.55033827 0 prediction 0.95070595299324 Functional Loss - CDX1 ENSG00000113722 CDS Human protein_coding chr5:149563163 chr5:149563163 nonsynonymous SNV 0.068 1 21 hm5C_associated_SNPs_47210 0 0 0 0 0 Ribosome 0.500231645469775 0 0.10067654 0.000463290939549443 hm5C_site_2530 DeepMRMD:0.10067654;iRNA_m5C:0.000463290939549443 2531 chr1 158325727 158325727 1 + C A LUSC 158325727 + 158325707 158325747 41 CCGTGTGGGTGATGTGGATGCGGGGTGAGCAGGAGCAGCGG CCGTGTGGGTGATGTGGATGAGGGGTGAGCAGGAGCAGCGG Direct Loss 0.975344983424681 0 0.91479135 0 prediction 0.950689966849361 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325727 chr1:158325727 synonymous SNV . 0 21 hm5C_associated_SNPs_47211 0 0 0 0 2 exosome 0.500231600584156 0 0.8295827 0.000463201168312111 hm5C_site_2531 DeepMRMD:0.8295827;iRNA_m5C:0.000463201168312111 2532 chr6 166401262 166401262 1 + C T CESC 166401262 + 166401242 166401282 41 TTCCAAAGGCTTGGGGCACTCTGGGGTGCGCGCCGATCTTC TTCCAAAGGCTTGGGGCACTTTGGGGTGCGCGCCGATCTTC Direct Loss 0.975310456915484 0 0.90968454 0 prediction 0.950620913830968 Functional Loss - LINC00473;LINC00602 ENSG00000223414 ncRNA_exonic Human lincRNA chr6:166401262 chr6:166401262 . . 0 21 hm5C_associated_SNPs_47212 0 0 0 0 0 unknown 0.500231643921092 0 0.81936908 0.000463287842184856 hm5C_site_2532 DeepMRMD:0.81936908;iRNA_m5C:0.000463287842184856 2533 chr1 101004651 101004651 1 + C A ESCA 101004651 + 101004631 101004671 41 CTGTATTCGGGCCTGGCCATCGGGGGCACGCTGGCCAACGG CTGTATTCGGGCCTGGCCATAGGGGGCACGCTGGCCAACGG Direct Loss 0.975293801542579 0 0.96093297 0 prediction 0.950587603085158 Functional Loss - GPR88 ENSG00000181656 CDS Human protein_coding chr1:101004651 chr1:101004651 synonymous SNV . 0 21 hm5C_associated_SNPs_47213 0 0 0 0 0 exosome 0.500231643920955 0 0.92186594 0.000463287841909743 hm5C_site_2533 DeepMRMD:0.92186594;iRNA_m5C:0.000463287841909743 2534 chr9 130868675 130868675 1 + C T BRCA 130868675 + 130868655 130868695 41 GCGGAAGACAGGCCAGTACTCAGGAATGCTGGACTGCGCCA GCGGAAGACAGGCCAGTACTTAGGAATGCTGGACTGCGCCA Direct Loss 0.975291156718893 0 0.90385044 0 prediction 0.950582313437787 Functional Loss - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130868675 chr9:130868675 nonsynonymous SNV 0.957 0 21 hm5C_associated_SNPs_47214 0 0 1 0 1 Ribosome 0.500231569902799 0 0.80770088 0.000463139805597201 hm5C_site_2534 DeepMRMD:0.80770088;iRNA_m5C:0.000463139805597201 2535 chr20 306839 306839 1 + C T BLCA 306839 + 306819 306859 41 CGGAGAAGATCCCGTTCGTGCGGGAGGCGGAGCGGCTGCGG CGGAGAAGATCCCGTTCGTGTGGGAGGCGGAGCGGCTGCGG Direct Loss 0.975247933838653 0 0.9041736 0 prediction 0.950495867677306 Functional Loss - SOX12 ENSG00000177732 CDS Human protein_coding chr20:306839 chr20:306839 nonsynonymous SNV 0.995 2 21 hm5C_associated_SNPs_47215 0 0 1 0 0 Ribosome 0.500231588656146 0 0.8083472 0.000463177312292729 hm5C_site_2535 DeepMRMD:0.8083472;iRNA_m5C:0.000463177312292729 2536 chr20 60868966 60868966 1 + C G rs115390538 60868966 + 60868946 60868986 41 GCCTGGAGGGGCCTGGGGCCCGGGACCGGAGGCTGACGAGG GCCTGGAGGGGCCTGGGGCCGGGGACCGGAGGCTGACGAGG Direct Loss 0.975226554504031 0 0.9109963 0 prediction 0.950453109008061 Functional Loss - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60868966 chr20:60868966 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_47216 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8219926 0.000463287842184856 hm5C_site_2536 DeepMRMD:0.8219926;iRNA_m5C:0.000463287842184856 2537 chr6 114181338 114181338 1 + C T STAD 114181338 + 114181318 114181358 41 GCTGCCGAAGGCGGCAAGGACGAGGCCGCCGGGGGCGCAGC GCTGCCGAAGGCGGCAAGGATGAGGCCGCCGGGGGCGCAGC Direct Loss 0.975204720831032 0 0.9087191 0 prediction 0.950409441662063 Functional Loss - MARCKS ENSG00000155130 CDS Human other chr6:114181338 chr6:114181338 synonymous SNV . 0 21 hm5C_associated_SNPs_47217 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8174382 0.000463287842184856 hm5C_site_2537 DeepMRMD:0.8174382;iRNA_m5C:0.000463287842184856 2538 chr6 43607888 43607888 1 + C T UCEC 43607888 + 43607868 43607908 41 CTTTGCACGGACACTAGTACCGCGAGTGCTGATTCTCCTTG CTTTGCACGGACACTAGTACTGCGAGTGCTGATTCTCCTTG Direct Loss 0.975190942853864 0 0.8605511 0 prediction 0.950381885707727 Functional Loss - MAD2L1BP ENSG00000124688 CDS Human protein_coding chr6:43607888 chr6:43607888 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_47218 0 0 1 0 0 Ribosome 0.500231579586139 0 0.7211022 0.000463159172278793 hm5C_site_2538 DeepMRMD:0.7211022;iRNA_m5C:0.000463159172278793 2539 chr6 74073495 74073495 1 + C T UCEC 74073495 + 74073475 74073515 41 TCTCCAGGCTGCCAACAAGTCGGGGACCCAGCGATCCCCCG TCTCCAGGCTGCCAACAAGTTGGGGACCCAGCGATCCCCCG Direct Loss 0.975153058790588 0 0.92975223 0 prediction 0.950306117581176 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74073495 chr6:74073495 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47219 0 0 0 0 0 unknown 0.500231643918836 0 0.85950446 0.000463287837672688 hm5C_site_2539 DeepMRMD:0.85950446;iRNA_m5C:0.000463287837672688 2540 chr7 53103825 53103825 1 + C A LUSC 53103825 + 53103805 53103845 41 GGAGAGCCCCTGGAGATCCCCTGGACAGAGAGCCCGCCCCG GGAGAGCCCCTGGAGATCCCATGGACAGAGAGCCCGCCCCG Direct Loss 0.975099136696185 0 0.8964225 0 prediction 0.950198273392371 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103825 chr7:53103825 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_47220 0 0 0 0 0 unknown 0.500231643921093 0 0.792845 0.000463287842185744 hm5C_site_2540 DeepMRMD:0.792845;iRNA_m5C:0.000463287842185744 2541 chr12 90103229 90103229 1 + C A rs576511566 90103229 + 90103209 90103249 41 GACCGGGACTGGGAGCTGAGCGGCACTGGGAGGGCGTTTAA GACCGGGACTGGGAGCTGAGAGGCACTGGGAGGGCGTTTAA Direct Loss 0.97509649749109 0 0.8995733 0 prediction 0.950192994982179 Functional Loss - ATP2B1-AS1 ENSG00000271614 ncRNA_exonic Human lincRNA chr12:90103229 chr12:90103229 . . 0 21 hm5C_associated_SNPs_47221 0 0 0 0 0 unknown 0.500231643921092 0 0.7991466 0.000463287842184856 hm5C_site_2541 DeepMRMD:0.7991466;iRNA_m5C:0.000463287842184856 2542 chr17 7612678 7612678 1 + C T rs199520559 7612678 + 7612658 7612698 41 CACCCTGGTCCTGGCTCCTTCGGGAGGGGAGGGTCTCTGGG CACCCTGGTCCTGGCTCCTTTGGGAGGGGAGGGTCTCTGGG Direct Loss 0.975095804896535 0 0.946969 0 prediction 0.95019160979307 Functional Loss - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7612678 chr17:7612678 synonymous SNV . 0 21 hm5C_associated_SNPs_47222 0 0 0 0 0 exosome 0.500231643921092 0 0.893938 0.000463287842184856 hm5C_site_2542 DeepMRMD:0.893938;iRNA_m5C:0.000463287842184856 2543 chr2 219501314 219501314 1 + C T rs150976760 219501314 + 219501294 219501334 41 GTCCTGAGGTGGGCATTTCACGGGAAGGGTTGGTGTGCTGG GTCCTGAGGTGGGCATTTCATGGGAAGGGTTGGTGTGCTGG Direct Loss 0.975083001385435 0 0.9080663 0 prediction 0.95016600277087 Functional Loss - PLCD4 ENSG00000115556 UTR3 Human protein_coding chr2:219501314 chr2:219501314 . . 0 21 hm5C_associated_SNPs_47223 0 0 0 1 0 chromatin 0.500231643921092 0 0.8161326 0.000463287842184856 hm5C_site_2543 DeepMRMD:0.8161326;iRNA_m5C:0.000463287842184856 2544 chr10 94452138 94452138 1 + C G LUAD 94452138 + 94452118 94452158 41 CTCGCAGGCAAACCTCTACTCTGGAGCCCCTTCTTGCAGAG CTCGCAGGCAAACCTCTACTGTGGAGCCCCTTCTTGCAGAG Direct Loss 0.975080490998085 0 0.76719326 0 prediction 0.950160981996171 Functional Loss - HHEX ENSG00000152804 CDS Human protein_coding chr10:94452138 chr10:94452138 synonymous SNV . 0 21 hm5C_associated_SNPs_47224 0 0 1 0 1 cytosol 0.500231644331249 0 0.53438652 0.000463288662498007 hm5C_site_2544 DeepMRMD:0.53438652;iRNA_m5C:0.000463288662498007 2545 chr7 140389471 140389471 1 + C A STAD 140389471 + 140389451 140389491 41 GACGTGGAGGGGTTCAAAACCGAGATGGCCATGCTGGTGAC GACGTGGAGGGGTTCAAAACAGAGATGGCCATGCTGGTGAC Direct Loss 0.975072937007822 0 0.85232544 0 prediction 0.950145874015645 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140389471 chr7:140389471 synonymous SNV . 0 21 hm5C_associated_SNPs_47225 0 0 1 0 2 Ribosome 0.500231644331175 0 0.70465088 0.000463288662349237 hm5C_site_2545 DeepMRMD:0.70465088;iRNA_m5C:0.000463288662349237 2546 chr11 107799382 107799382 1 + C A LIHC 107799382 + 107799362 107799402 41 GCCTCCTGCACCGCTTCACCCAGGGCCGCTTCCCCGGGCTG GCCTCCTGCACCGCTTCACCAAGGGCCGCTTCCCCGGGCTG Direct Loss 0.975066914367367 0 0.962747 0 prediction 0.950133828734734 Functional Loss - RAB39A ENSG00000179331 CDS Human protein_coding chr11:107799382 chr11:107799382 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_47226 0 0 1 0 0 Nucleus 0.500231643921092 0 0.925494 0.000463287842184856 hm5C_site_2546 DeepMRMD:0.925494;iRNA_m5C:0.000463287842184856 2547 chr19 53088568 53088568 1 + C T rs329936 53088568 + 53088548 53088588 41 CAGCGCTGCAGCCCCACTCCCGGGAAGGCCGCGTCCTCTGC CAGCGCTGCAGCCCCACTCCTGGGAAGGCCGCGTCCTCTGC Direct Loss 0.975043209664025 0 0.9233434 0 prediction 0.95008641932805 Functional Loss - ZNF701 ENSG00000268886 ncRNA_exonic Human antisense chr19:53088568 chr19:53088568 . . 0 21 hm5C_associated_SNPs_47227 0 0 0 0 0 nucleolus 0.500231643921142 0 0.8466868 0.000463287842283222 hm5C_site_2547 DeepMRMD:0.8466868;iRNA_m5C:0.000463287842283222 2548 chr17 74523791 74523791 1 + C A rs8189 74523791 + 74523771 74523811 41 GCCCAGCAGCCCGGATCCCCCGGGGCTGCCCTGGTGGCCAA GCCCAGCAGCCCGGATCCCCAGGGGCTGCCCTGGTGGCCAA Direct Loss 0.975025927062406 0 0.9278084 0 prediction 0.950051854124812 Functional Loss - CYGB ENSG00000161544 UTR3 Human protein_coding chr17:74523791 chr17:74523791 . . 0 21 hm5C_associated_SNPs_47228 0 0 0 0 0 Cytosol 0.500231643921277 0 0.8556168 0.000463287842553006 hm5C_site_2548 DeepMRMD:0.8556168;iRNA_m5C:0.000463287842553006 2549 chr19 41265470 41265470 1 + C T COAD 41265470 + 41265450 41265490 41 ACCAAGAAGGCTGTGCAAGGCGGGGGAGCCACCCCCGTGGT ACCAAGAAGGCTGTGCAAGGTGGGGGAGCCACCCCCGTGGT Direct Loss 0.975005460791204 0 0.9182533 0 prediction 0.950010921582408 Functional Loss - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41265470 chr19:41265470 synonymous SNV . 0 21 hm5C_associated_SNPs_47229 0 0 1 0 1 Ribosome 0.500231643941075 0 0.8365066 0.000463287882149555 hm5C_site_2549 DeepMRMD:0.8365066;iRNA_m5C:0.000463287882149555 2550 chr19 30018153 30018153 1 + C T UCEC 30018153 + 30018133 30018173 41 TCCCCAAAGATGTGACAGTACGGGAGGGAGACGACATCGAA TCCCCAAAGATGTGACAGTATGGGAGGGAGACGACATCGAA Direct Loss 0.975000646969507 0 0.66268444 0 prediction 0.950001293939013 Functional Loss - VSTM2B ENSG00000187135 CDS Human protein_coding chr19:30018153 chr19:30018153 nonsynonymous SNV 0.985 3 21 hm5C_associated_SNPs_47230 0 0 0 0 1 exosome 0.500231643921094 0 0.32536888 0.000463287842187521 hm5C_site_2550 DeepMRMD:0.32536888;iRNA_m5C:0.000463287842187521 2551 chr1 94057826 94057826 1 + C T LGG 94057826 + 94057806 94057846 41 GGACAAGACCAGGTACCTGTCGGGGGATGCGGCCGTGGTAC GGACAAGACCAGGTACCTGTTGGGGGATGCGGCCGTGGTAC Direct Loss 0.974955084440826 0 0.9553522 0 prediction 0.949910168881652 Functional Loss - BCAR3 ENSG00000137936 CDS Human protein_coding chr1:94057826 chr1:94057826 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_47231 0 0 1 0 0 Nucleus 0.5002316438641 0 0.9107044 0.000463287728199147 hm5C_site_2551 DeepMRMD:0.9107044;iRNA_m5C:0.000463287728199147 2552 chr1 233497811 233497811 1 + C T COAD 233497811 + 233497791 233497831 41 TGTCGCAGGAGCTGCGATCCCGGGAAGAGGAGCTGACTCGG TGTCGCAGGAGCTGCGATCCTGGGAAGAGGAGCTGACTCGG Direct Loss 0.974948965613985 0 0.9050766 0 prediction 0.94989793122797 Functional Loss - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233497811 chr1:233497811 nonsynonymous SNV 0.985 1 21 hm5C_associated_SNPs_47232 0 0 1 0 1 unknown 0.500231643932652 0 0.8101532 0.000463287865304141 hm5C_site_2552 DeepMRMD:0.8101532;iRNA_m5C:0.000463287865304141 2553 chr20 55033762 55033762 1 + C A UCEC 55033762 + 55033742 55033782 41 TCCAGGCGGAGGCTGAGAAGCTGGAGCAACACACGCGGCAG TCCAGGCGGAGGCTGAGAAGATGGAGCAACACACGCGGCAG Direct Loss 0.974931883636751 0 0.9021666 0 prediction 0.949863767273503 Functional Loss - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55033762 chr20:55033762 nonsynonymous SNV 0.224 4 21 hm5C_associated_SNPs_47233 0 0 0 0 0 chromatin 0.500231618560376 0 0.8043332 0.000463237120751137 hm5C_site_2553 DeepMRMD:0.8043332;iRNA_m5C:0.000463237120751137 2554 chr21 37507579 37507579 1 + C T HNSC 37507579 + 37507559 37507599 41 CGAACTGTGCCGACAGTTCTCTGGGGATGTGGTGCTCACCG CGAACTGTGCCGACAGTTCTTTGGGGATGTGGTGCTCACCG Direct Loss 0.974927402746488 0 0.9111743 0 prediction 0.949854805492976 Functional Loss - CBR3 ENSG00000159231 CDS Human protein_coding chr21:37507579 chr21:37507579 nonsynonymous SNV 0.982 1 21 hm5C_associated_SNPs_47234 0 0 1 0 0 exosome 0.500231169500007 0 0.8223486 0.000462339000013801 hm5C_site_2554 DeepMRMD:0.8223486;iRNA_m5C:0.000462339000013801 2555 chrX 26211978 26211978 1 + C T STAD 26211978 + 26211958 26211998 41 GCCATCATGCCTCGGGGTCACAAGAGTAAGCTCCGTACCTG GCCATCATGCCTCGGGGTCATAAGAGTAAGCTCCGTACCTG Direct Loss 0.974906581665197 0 0.86367214 0 prediction 0.949813163330395 Functional Loss - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26211978 chrX:26211978 synonymous SNV . 0 21 hm5C_associated_SNPs_47235 0 0 0 0 1 unknown 0.500224368938168 0 0.72734428 0.00044873787633648 hm5C_site_2555 DeepMRMD:0.72734428;iRNA_m5C:0.00044873787633648 2556 chr9 127055259 127055259 1 + C T rs534681996 127055259 + 127055239 127055279 41 GCTGGGAGGCAGCTCATTTCCGGCAGGAGGAGCAGAGCCTG GCTGGGAGGCAGCTCATTTCTGGCAGGAGGAGCAGAGCCTG Direct Loss 0.974900515107783 0 0.762229 0 prediction 0.949801030215566 Functional Loss - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127055259 chr9:127055259 nonsynonymous SNV 0.006 2 21 hm5C_associated_SNPs_47236 0 0 0 0 1 Cytosol 0.500231643921093 0 0.524458 0.000463287842185078 hm5C_site_2556 DeepMRMD:0.524458;iRNA_m5C:0.000463287842185078 2557 chr12 96350699 96350699 1 + C T COAD 96350699 + 96350679 96350719 41 GCCCGGCGGGAGCTGGACATCGGCATCTCGGCTACCTACTG GCCCGGCGGGAGCTGGACATTGGCATCTCGGCTACCTACTG Direct Loss 0.974843300048791 0 0.68952197 0 prediction 0.949686600097581 Functional Loss - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96350699 chr12:96350699 synonymous SNV . 0 21 hm5C_associated_SNPs_47237 0 0 1 0 1 Cytosol 0.500231634120043 0 0.37904394 0.000463268240085135 hm5C_site_2557 DeepMRMD:0.37904394;iRNA_m5C:0.000463268240085135 2558 chr2 198418062 198418062 1 + C T rs192832194 198418062 + 198418042 198418082 41 GCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCGGTG GCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCGGTG Direct Loss 0.974841981091377 0 0.9167557 0 prediction 0.949683962182754 Functional Loss - HSPE1-MOB4;MOB4 ENSG00000115540 UTR3 Human protein_coding chr2:198418062 chr2:198418062 . . 0 21 hm5C_associated_SNPs_47238 0 0 0 0 0 unknown 0.500231643921222 0 0.8335114 0.000463287842443538 hm5C_site_2558 DeepMRMD:0.8335114;iRNA_m5C:0.000463287842443538 2559 chr19 41743883 41743883 1 + C T BRCA 41743883 + 41743863 41743903 41 CGATGGGATGGGCATCCAGGCGGGAGAACCAGACCCCCCAG CGATGGGATGGGCATCCAGGTGGGAGAACCAGACCCCCCAG Direct Loss 0.974837554923686 0 0.91474104 0 prediction 0.949675109847371 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41743883 chr19:41743883 nonsynonymous SNV 0.009 0 21 hm5C_associated_SNPs_47239 0 0 0 0 1 Nucleus 0.500231643919121 0 0.82948208 0.000463287838241566 hm5C_site_2559 DeepMRMD:0.82948208;iRNA_m5C:0.000463287838241566 2560 chr2 68385189 68385189 1 + C T GBM 68385189 + 68385169 68385209 41 CTGTCCGCAGCAGGAGAGGGCGGGGATGCGGGCCGCATGGA CTGTCCGCAGCAGGAGAGGGTGGGGATGCGGGCCGCATGGA Direct Loss 0.974835429843852 0 0.9127034 0 prediction 0.949670859687703 Functional Loss - PNO1 ENSG00000115946;ENSG00000273398 CDS Human other chr2:68385189 chr2:68385189 synonymous SNV . 0 21 hm5C_associated_SNPs_47240 0 0 1 0 1 Ribosome 0.500231643921092 0 0.8254068 0.000463287842184856 hm5C_site_2560 DeepMRMD:0.8254068;iRNA_m5C:0.000463287842184856 2561 chr7 152161688 152161688 1 + C G rs10238425 152161688 + 152161668 152161708 41 AGTGGGGAGCCGGGAGGAACCTGGCGCCGGCACCCACCCGC AGTGGGGAGCCGGGAGGAACGTGGCGCCGGCACCCACCCGC Direct Loss 0.974811553306041 0 0.8976393 0 prediction 0.949623106612081 Functional Loss - LINC01003 ENSG00000261455 ncRNA_exonic Human lincRNA chr7:152161688 chr7:152161688 . . 0 21 hm5C_associated_SNPs_47241 0 0 1 0 0 unknown 0.500231656061351 0 0.7952786 0.000463312122701565 hm5C_site_2561 DeepMRMD:0.7952786;iRNA_m5C:0.000463312122701565 2562 chr7 53103646 53103646 1 + C T LUAD 53103646 + 53103626 53103666 41 AAGCCGCAGCGGGTGGTCTCCGAGGGCTGGAGGCGCCCTGC AAGCCGCAGCGGGTGGTCTCTGAGGGCTGGAGGCGCCCTGC Direct Loss 0.974806050149312 0 0.9526267 0 prediction 0.949612100298624 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103646 chr7:53103646 synonymous SNV . 0 21 hm5C_associated_SNPs_47242 0 0 0 0 0 unknown 0.500231643845546 0 0.9052534 0.000463287691091718 hm5C_site_2562 DeepMRMD:0.9052534;iRNA_m5C:0.000463287691091718 2563 chr14 59113436 59113436 1 + C T PRAD 59113436 + 59113416 59113456 41 GGAGGGCCCGGCGCGGTCGCCGGGAGAATGTGGGGCTGTAC GGAGGGCCCGGCGCGGTCGCTGGGAGAATGTGGGGCTGTAC Direct Loss 0.974797761054681 0 0.9277697 0 prediction 0.949595522109361 Functional Loss - DACT1 ENSG00000165617 CDS Human protein_coding chr14:59113436 chr14:59113436 nonsynonymous SNV 0.440 3 21 hm5C_associated_SNPs_47243 0 0 0 0 0 exosome 0.500231643914166 0 0.8555394 0.000463287828331493 hm5C_site_2563 DeepMRMD:0.8555394;iRNA_m5C:0.000463287828331493 2564 chr6 110300475 110300475 1 + C G LUSC 110300475 + 110300455 110300495 41 GCGGCGGAGCTAATGGGTCTCTGGAGCTGTCCTCGCAGCTG GCGGCGGAGCTAATGGGTCTGTGGAGCTGTCCTCGCAGCTG Direct Loss 0.974747738732996 0 0.8706404 0 prediction 0.949495477465992 Functional Loss - GPR6 ENSG00000146360 CDS Human protein_coding chr6:110300475 chr6:110300475 nonsynonymous SNV 0.319 1 21 hm5C_associated_SNPs_47244 0 0 0 0 0 unknown 0.500231198885509 0 0.7412808 0.000462397771018308 hm5C_site_2564 DeepMRMD:0.7412808;iRNA_m5C:0.000462397771018308 2565 chr17 7360560 7360560 1 + C T rs190725123 7360560 + 7360540 7360580 41 GCAGGAGAATCACTCGAACCCGGGAGGCAGAGGTTGCAGTG GCAGGAGAATCACTCGAACCTGGGAGGCAGAGGTTGCAGTG Direct Loss 0.974741101093131 0 0.925493 0 prediction 0.949482202186262 Functional Loss - CHRNB1 ENSG00000170175 UTR3 Human protein_coding chr17:7360560 chr17:7360560 . . 0 21 hm5C_associated_SNPs_47245 0 0 0 0 0 chromatin 0.500231643921092 0 0.850986 0.000463287842184856 hm5C_site_2565 DeepMRMD:0.850986;iRNA_m5C:0.000463287842184856 2566 chr3 139063000 139063000 1 + C G CESC 139063000 + 139062980 139063020 41 CAACCGCTACCTTGCTCTTTCGAGATGGGGCTGCCACGCCG CAACCGCTACCTTGCTCTTTGGAGATGGGGCTGCCACGCCG Direct Loss 0.974729744703731 0 0.95111316 0 prediction 0.949459489407461 Functional Loss - MRPS22 ENSG00000175110 CDS Human protein_coding chr3:139063000 chr3:139063000 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_47246 0 0 1 0 1 Ribosome 0.500122803748793 0 0.90222632 0.000245607497586509 hm5C_site_2566 DeepMRMD:0.90222632;iRNA_m5C:0.000245607497586509 2567 chr1 147380445 147380445 1 + C T GBM 147380445 + 147380425 147380465 41 GGCCAGCAGGCGGGGACTAACGGCGGCCCGGACCAGGGCAG GGCCAGCAGGCGGGGACTAATGGCGGCCCGGACCAGGGCAG Direct Loss 0.97471851968408 0 0.9042355 0 prediction 0.949437039368161 Functional Loss - GJA8 ENSG00000121634 CDS Human protein_coding chr1:147380445 chr1:147380445 synonymous SNV . 0 21 hm5C_associated_SNPs_47247 0 0 0 0 0 unknown 0.500231643921092 0 0.808471 0.000463287842184856 hm5C_site_2567 DeepMRMD:0.808471;iRNA_m5C:0.000463287842184856 2568 chr19 8550545 8550545 1 + C T UCEC 8550545 + 8550525 8550565 41 GGTCCTGGCATTGACCGCCTCGGGGGTGCCGGCATGGAGCG GGTCCTGGCATTGACCGCCTTGGGGGTGCCGGCATGGAGCG Direct Loss 0.974692939598518 0 0.9320346 0 prediction 0.949385879197036 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8550545 chr19:8550545 synonymous SNV . 0 21 hm5C_associated_SNPs_47248 0 0 1 0 1 Nucleus 0.500231643921092 0 0.8640692 0.000463287842184856 hm5C_site_2568 DeepMRMD:0.8640692;iRNA_m5C:0.000463287842184856 2569 chr2 239010690 239010690 1 + C A rs34878344 239010690 + 239010670 239010710 41 ACTCGGCCACGCTAGAGACCCGGGAGGGAGCCCGGCCGCTG ACTCGGCCACGCTAGAGACCAGGGAGGGAGCCCGGCCGCTG Direct Loss 0.974679202568514 0 0.9418125 0 prediction 0.949358405137028 Functional Loss - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239010690 chr2:239010690 synonymous SNV . 0 21 hm5C_associated_SNPs_47249 0 0 0 0 1 exosome 0.500231643921088 0 0.883625 0.000463287842175308 hm5C_site_2569 DeepMRMD:0.883625;iRNA_m5C:0.000463287842175308 2570 chr1 235597533 235597533 1 + C T UCEC 235597533 + 235597513 235597553 41 TTCCAGGTGCTGCGGTGTGTCGCGGGGTGCCCAGGCCTGGA TTCCAGGTGCTGCGGTGTGTTGCGGGGTGCCCAGGCCTGGA Direct Loss 0.974678476999388 0 0.91008073 0 prediction 0.949356953998776 Functional Loss - TBCE ENSG00000116957 CDS Human protein_coding chr1:235597533 chr1:235597533 synonymous SNV . 0 21 hm5C_associated_SNPs_47250 0 0 1 0 2 chromatin 0.500231606315186 0 0.82016146 0.000463212630371412 hm5C_site_2570 DeepMRMD:0.82016146;iRNA_m5C:0.000463212630371412 2571 chr1 154296202 154296202 1 + C T STAD 154296202 + 154296182 154296222 41 TTATCCATGGGTGCCAACTGCGGGATTCCACTCAACCCTGC TTATCCATGGGTGCCAACTGTGGGATTCCACTCAACCCTGC Direct Loss 0.974672466811784 0 0.91197467 0 prediction 0.949344933623568 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296202 chr1:154296202 synonymous SNV . 0 21 hm5C_associated_SNPs_47251 0 0 1 0 1 Ribosome 0.500231643920289 0 0.82394934 0.000463287840577031 hm5C_site_2571 DeepMRMD:0.82394934;iRNA_m5C:0.000463287840577031 2572 chr19 35850542 35850542 1 + C T GBM 35850542 + 35850522 35850562 41 TCCCATGTCGTGGGCTATATCTGCGGTGAAAGCCCGGCGTG TCCCATGTCGTGGGCTATATTTGCGGTGAAAGCCCGGCGTG Direct Loss 0.974625741584549 0 0.94427085 0 prediction 0.949251483169097 Functional Loss - FFAR3 ENSG00000185897 CDS Human protein_coding chr19:35850542 chr19:35850542 synonymous SNV . 0 21 hm5C_associated_SNPs_47252 0 0 0 0 0 exosome 0.500231643204984 0 0.8885417 0.000463286409967623 hm5C_site_2572 DeepMRMD:0.8885417;iRNA_m5C:0.000463286409967623 2573 chr14 21500154 21500154 1 + C A HNSC 21500154 + 21500134 21500174 41 TGGCAAGGGCAAGGGCATTGCGGGACGGGAAGAGATGACTG TGGCAAGGGCAAGGGCATTGAGGGACGGGAAGAGATGACTG Direct Loss 0.974609388170103 0 0.893574 0 prediction 0.949218776340206 Functional Loss - TPPP2 ENSG00000179636 CDS Human protein_coding chr14:21500154 chr14:21500154 nonsynonymous SNV 0.604 0 21 hm5C_associated_SNPs_47253 0 0 0 0 0 exosome 0.500231643921093 0 0.787148 0.000463287842185078 hm5C_site_2573 DeepMRMD:0.787148;iRNA_m5C:0.000463287842185078 2574 chr8 11184403 11184403 1 + C A rs536520846 11184403 + 11184383 11184423 41 GCAGGAGAATGGTGTGAACCCGGGAGGCAGAGCTTGCAGTG GCAGGAGAATGGTGTGAACCAGGGAGGCAGAGCTTGCAGTG Direct Loss 0.974605737475368 0 0.9049982 0 prediction 0.949211474950736 Functional Loss - MTMR9 ENSG00000104643 UTR3 Human protein_coding chr8:11184403 chr8:11184403 . . 0 21 hm5C_associated_SNPs_47254 0 0 0 0 0 Ribosome 0.500231643919388 0 0.8099964 0.000463287838776916 hm5C_site_2574 DeepMRMD:0.8099964;iRNA_m5C:0.000463287838776916 2575 chr11 62382160 62382160 1 + C T UCEC 62382160 + 62382140 62382180 41 GCTTGGAGGGGTCATTGATGCGGGAGGAGAGACCCAGGGCT GCTTGGAGGGGTCATTGATGTGGGAGGAGAGACCCAGGGCT Direct Loss 0.974592955320085 0 0.93269813 0 prediction 0.949185910640171 Functional Loss - ROM1 ENSG00000149489 CDS Human protein_coding chr11:62382160 chr11:62382160 nonsynonymous SNV 0.976 0 21 hm5C_associated_SNPs_47255 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0 0.86539626 0.000463287842184856 hm5C_site_2575 DeepMRMD:0.86539626;iRNA_m5C:0.000463287842184856 2576 chr11 45949777 45949777 1 + C T STAD 45949777 + 45949757 45949797 41 CCACAGACTATGCCCGCTGGCGGGAGGCTCAGGCCCCGTAC CCACAGACTATGCCCGCTGGTGGGAGGCTCAGGCCCCGTAC Direct Loss 0.974562652938415 0 0.9422135 0 prediction 0.94912530587683 Functional Loss - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949777 chr11:45949777 nonsynonymous SNV 0.951 4 21 hm5C_associated_SNPs_47256 0 0 1 0 1 chromatin 0.500231643921092 0 0.884427 0.000463287842184856 hm5C_site_2576 DeepMRMD:0.884427;iRNA_m5C:0.000463287842184856 2577 chr6 137243952 137243952 1 + C T COAD 137243952 + 137243932 137243972 41 GCTCAAGAACGGCGCGCCCTCGCCAGGGGTGCTGGCGGCGG GCTCAAGAACGGCGCGCCCTTGCCAGGGGTGCTGGCGGCGG Direct Loss 0.974556742163109 0 0.61605376 0 prediction 0.949113484326218 Functional Loss - SLC35D3 ENSG00000182747 CDS Human protein_coding chr6:137243952 chr6:137243952 nonsynonymous SNV 0.977 3 21 hm5C_associated_SNPs_47257 0 0 0 0 1 exosome 0.500231643922746 0 0.23210752 0.000463287845492211 hm5C_site_2577 DeepMRMD:0.23210752;iRNA_m5C:0.000463287845492211 2578 chrX 102632525 102632525 1 + C T SKCM 102632525 + 102632505 102632545 41 GCCACCAGCCTGCAGGAAATCGACGGGGACAGGCTCGCCGA GCCACCAGCCTGCAGGAAATTGACGGGGACAGGCTCGCCGA Direct Loss 0.974555216832713 0 0.8654676 0 prediction 0.949110433665427 Functional Loss - BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632525 chrX:102632525 stopgain 0.927 1 21 hm5C_associated_SNPs_47258 0 0 1 0 1 Cytosol 0.500231643921092 0 0.7309352 0.000463287842184856 hm5C_site_2578 DeepMRMD:0.7309352;iRNA_m5C:0.000463287842184856 2579 chr2 17997998 17997998 1 + C T UCEC 17997998 + 17997978 17998018 41 GCTGGGCTGCCCTGTGAGCACGGCGGGGCCAGCAGTGGGGG GCTGGGCTGCCCTGTGAGCATGGCGGGGCCAGCAGTGGGGG Direct Loss 0.974547114127161 0 0.73562926 0 prediction 0.949094228254321 Functional Loss - MSGN1 ENSG00000151379 CDS Human protein_coding chr2:17997998 chr2:17997998 synonymous SNV . 0 21 hm5C_associated_SNPs_47259 0 0 0 0 0 exosome 0.500231643921092 0 0.47125852 0.000463287842184856 hm5C_site_2579 DeepMRMD:0.47125852;iRNA_m5C:0.000463287842184856 2580 chrX 68049093 68049093 1 + C T rs751999363 68049093 + 68049073 68049113 41 GCTGTCCGGGGGCGCGTAGCCCGGAGTCCCAGTGTGGCCCG GCTGTCCGGGGGCGCGTAGCTCGGAGTCCCAGTGTGGCCCG Direct Loss 0.974535343649604 0 0.9163495 0 prediction 0.949070687299209 Functional Loss - EFNB1 ENSG00000090776 UTR5 Human protein_coding chrX:68049093 chrX:68049093 . . 0 21 hm5C_associated_SNPs_47260 0 0 1 0 0 Endoplasmic reticulum 0.500231643920553 0 0.832699 0.000463287841105942 hm5C_site_2580 DeepMRMD:0.832699;iRNA_m5C:0.000463287841105942 2581 chr7 53103417 53103417 1 + C T LUSC 53103417 + 53103397 53103437 41 CCTCGGGAACTTCTGGAAGGCGGGAGAACCCCTGCTGCAAG CCTCGGGAACTTCTGGAAGGTGGGAGAACCCCTGCTGCAAG Direct Loss 0.974529987786779 0 0.9223768 0 prediction 0.949059975573558 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103417 chr7:53103417 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47261 0 0 0 0 0 unknown 0.500231643921092 0 0.8447536 0.000463287842184856 hm5C_site_2581 DeepMRMD:0.8447536;iRNA_m5C:0.000463287842184856 2582 chr6 114181358 114181358 1 + C T rs374780311 114181358 + 114181338 114181378 41 CGAGGCCGCCGGGGGCGCAGCTGCGGCCGCCGCCGAGGCGG CGAGGCCGCCGGGGGCGCAGTTGCGGCCGCCGCCGAGGCGG Direct Loss 0.974488208503351 0 0.7408581 0 prediction 0.948976417006702 Functional Loss - MARCKS ENSG00000155130 CDS Human other chr6:114181358 chr6:114181358 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_47262 0 0 1 0 0 Ribosome 0.500231643921093 0 0.4817162 0.0004632878421853 hm5C_site_2582 DeepMRMD:0.4817162;iRNA_m5C:0.0004632878421853 2583 chr3 98001790 98001790 1 + C T UCEC 98001790 + 98001770 98001810 41 GCTGACAGAGTTTGTTCTCACAGGACTTACATATCAGCCAG GCTGACAGAGTTTGTTCTCATAGGACTTACATATCAGCCAG Direct Loss 0.974474711509974 0 0.86680496 0 prediction 0.948949423019949 Functional Loss - OR5H2 ENSG00000197938 CDS Human protein_coding chr3:98001790 chr3:98001790 nonsynonymous SNV 0.984 0 21 hm5C_associated_SNPs_47263 0 0 0 0 0 unknown 0.500231644164025 0 0.73360992 0.000463288328049094 hm5C_site_2583 DeepMRMD:0.73360992;iRNA_m5C:0.000463288328049094 2584 chr9 91150599 91150599 1 + C A LUAD 91150599 + 91150579 91150619 41 AGGAGATGCTGGACTTCATGCGCGAGCTGCATGGCGCCTGG AGGAGATGCTGGACTTCATGAGCGAGCTGCATGGCGCCTGG Direct Loss 0.974473973222179 0 0.7781161 0 prediction 0.948947946444357 Functional Loss - NXNL2 ENSG00000130045 CDS Human protein_coding chr9:91150599 chr9:91150599 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_47264 0 0 0 0 1 Nucleus 0.500231578633574 0 0.5562322 0.000463157267147851 hm5C_site_2584 DeepMRMD:0.5562322;iRNA_m5C:0.000463157267147851 2585 chr17 77709121 77709121 1 + C T PRAD 77709121 + 77709101 77709141 41 ACCGGACCGTGGGCTACCTCCGGGAGAGCATCGCGCGCAAC ACCGGACCGTGGGCTACCTCTGGGAGAGCATCGCGCGCAAC Direct Loss 0.974468194564869 0 0.9214728 0 prediction 0.948936389129738 Functional Loss - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77709121 chr17:77709121 nonsynonymous SNV 0.761 4 21 hm5C_associated_SNPs_47265 0 0 0 0 0 exosome 0.50023163713275 0 0.8429456 0.000463274265500191 hm5C_site_2585 DeepMRMD:0.8429456;iRNA_m5C:0.000463274265500191 2586 chr8 39786144 39786144 1 + C A rs191858087 39786144 + 39786124 39786164 41 CACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA CACCTGTAGTCCCAGCTACTAGGGAGGCTGAGGCAGGAGAA Direct Loss 0.974461445841924 0 0.91708916 0 prediction 0.948922891683849 Functional Loss - IDO1 ENSG00000253939 ncRNA_intronic Human antisense chr8:39786144 chr8:39786144 . . 0 21 hm5C_associated_SNPs_47266 0 0 0 0 0 Cytosol 0.500231643921092 0 0.83417832 0.000463287842184856 hm5C_site_2586 DeepMRMD:0.83417832;iRNA_m5C:0.000463287842184856 2587 chr18 22006711 22006711 1 + C T rs369080399 22006711 + 22006691 22006731 41 CGGCGGCTGCAGGGCAGGTCCAGGGGCCACATGGCTGAGGG CGGCGGCTGCAGGGCAGGTCTAGGGGCCACATGGCTGAGGG Direct Loss 0.974452626649645 0 0.901204 0 prediction 0.94890525329929 Functional Loss - IMPACT ENSG00000154059 UTR5 Human protein_coding chr18:22006711 chr18:22006711 . . 0 21 hm5C_associated_SNPs_47267 0 0 1 0 1 Ribosome 0.500231643915544 0 0.802408 0.000463287831087733 hm5C_site_2587 DeepMRMD:0.802408;iRNA_m5C:0.000463287831087733 2588 chr11 35684686 35684686 1 + C T LUSC 35684686 + 35684666 35684706 41 TCTGGAGTGGGCGCGGCCTTCGAGGAACTGCCTCACGACGG TCTGGAGTGGGCGCGGCCTTTGAGGAACTGCCTCACGACGG Direct Loss 0.97438337725322 0 0.887131 0 prediction 0.948766754506441 Functional Loss - TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684686 chr11:35684686 synonymous SNV . 0 21 hm5C_associated_SNPs_47268 0 0 1 0 0 Ribosome 0.500231643921456 0 0.774262 0.000463287842912719 hm5C_site_2588 DeepMRMD:0.774262;iRNA_m5C:0.000463287842912719 2589 chr14 73570071 73570071 1 + C T COAD 73570071 + 73570051 73570091 41 AACGGGAGCGGGAACGAGAACGGGATAGGGACCGTGACCGG AACGGGAGCGGGAACGAGAATGGGATAGGGACCGTGACCGG Direct Loss 0.97436441343017 0 0.868242 0 prediction 0.94872882686034 Functional Loss - RBM25 ENSG00000119707 CDS Human protein_coding chr14:73570071 chr14:73570071 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47269 0 0 1 0 0 Nucleus 0.500231643921092 0 0.736484 0.000463287842184856 hm5C_site_2589 DeepMRMD:0.736484;iRNA_m5C:0.000463287842184856 2590 chrX 30237469 30237469 1 + C A UCEC 30237469 + 30237449 30237489 41 ATCTGGTGCAGGAAAAATATCTGGAGTACAAGCAGGTGCCC ATCTGGTGCAGGAAAAATATATGGAGTACAAGCAGGTGCCC Direct Loss 0.974340124688677 0 0.5419228 0 prediction 0.948680249377354 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30237469 chrX:30237469 nonsynonymous SNV 0.384 4 21 hm5C_associated_SNPs_47270 0 0 1 0 0 exosome 0.500231643784706 0 0.0838456000000001 0.000463287569411053 hm5C_site_2590 DeepMRMD:0.0838456000000001;iRNA_m5C:0.000463287569411053 2591 chr13 111371617 111371617 1 + C T UCEC 111371617 + 111371597 111371637 41 AGTGCTACGAGCGCTTCAGTCGCGAGACAGACGGGGCGCAG AGTGCTACGAGCGCTTCAGTTGCGAGACAGACGGGGCGCAG Direct Loss 0.974329734788571 0 0.86141366 0 prediction 0.948659469577142 Functional Loss - ING1 ENSG00000153487 CDS Human protein_coding chr13:111371617 chr13:111371617 nonsynonymous SNV 0.022 4 21 hm5C_associated_SNPs_47271 0 0 1 0 1 Endoplasmic reticulum 0.500232915066316 0 0.72282732 0.000465830132632794 hm5C_site_2591 DeepMRMD:0.72282732;iRNA_m5C:0.000465830132632794 2592 chr7 106508995 106508995 1 + C T rs62001906 106508995 + 106508975 106509015 41 GCCACTGGTGGATGACTGCACGGGAGTCACCGGCTACCATG GCCACTGGTGGATGACTGCATGGGAGTCACCGGCTACCATG Direct Loss 0.974323801276984 0 0.8244891 0 prediction 0.948647602553968 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508995 chr7:106508995 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_47272 0 0 1 0 0 Cytosol 0.500229407362621 0 0.6489782 0.000458814725242007 hm5C_site_2592 DeepMRMD:0.6489782;iRNA_m5C:0.000458814725242007 2593 chr2 20647241 20647241 1 + C T rs7043 20647241 + 20647221 20647261 41 CCGCTCATGGCGGCCATCCGCAAGAAGCTGGTGGTGGTGGG CCGCTCATGGCGGCCATCCGTAAGAAGCTGGTGGTGGTGGG Direct Loss 0.974323396369654 0 0.84615445 0 prediction 0.948646792739309 Functional Loss - RHOB ENSG00000143878 CDS Human protein_coding chr2:20647241 chr2:20647241 synonymous SNV . 0 21 hm5C_associated_SNPs_47273 0 0 1 0 0 Cytosol 0.500231643921854 0 0.6923089 0.000463287843708304 hm5C_site_2593 DeepMRMD:0.6923089;iRNA_m5C:0.000463287843708304 2594 chr19 17873655 17873655 1 + C T UCEC 17873655 + 17873635 17873675 41 AGGAGCTGGCGGACTTCATCCGGGAGAGGTGAGGTCCCCAA AGGAGCTGGCGGACTTCATCTGGGAGAGGTGAGGTCCCCAA Direct Loss 0.974319891454648 0 0.9373492 0 prediction 0.948639782909295 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17873655 chr19:17873655 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_47274 0 0 1 0 2 Cytosol 0.500231643921092 0 0.8746984 0.000463287842184856 hm5C_site_2594 DeepMRMD:0.8746984;iRNA_m5C:0.000463287842184856 2595 chr1 158151354 158151354 1 + C T HNSC 158151354 + 158151334 158151374 41 GGGGAGCTGCAGACGCACAGCTGGAGCAACGACTCGGACAC GGGGAGCTGCAGACGCACAGTTGGAGCAACGACTCGGACAC Direct Loss 0.974310149163669 0 0.37745094 0 prediction 0.948620298327339 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151354 chr1:158151354 synonymous SNV . 0 21 hm5C_associated_SNPs_47275 0 0 0 0 1 Endoplasmic reticulum 0.500231645435106 0 0 0.00046329087021113 hm5C_site_2595 DeepMRMD:0;iRNA_m5C:0.00046329087021113 2596 chr2 7023639 7023639 1 + C T COAD 7023639 + 7023619 7023659 41 TGAGCAATGGAAGCCTGATCCGGGAGAGGTGGTTCCAGAAT TGAGCAATGGAAGCCTGATCTGGGAGAGGTGGTTCCAGAAT Direct Loss 0.974301412645742 0 0.91621846 0 prediction 0.948602825291484 Functional Loss - RSAD2 ENSG00000134321 CDS Human protein_coding chr2:7023639 chr2:7023639 nonsynonymous SNV 0.985 2 21 hm5C_associated_SNPs_47276 0 0 0 0 1 exosome 0.500233424195681 0 0.83243692 0.000466848391361907 hm5C_site_2596 DeepMRMD:0.83243692;iRNA_m5C:0.000466848391361907 2597 chr8 128428407 128428407 1 + C G STAD 128428407 + 128428387 128428427 41 CTCTCAGCCTGAGAGCGAAGCAGGAGTCGGGGTGGAGAGCA CTCTCAGCCTGAGAGCGAAGGAGGAGTCGGGGTGGAGAGCA Direct Loss 0.9742932100687 0 0.92278457 0 prediction 0.948586420137399 Functional Loss - POU5F1B ENSG00000212993 CDS Human protein_coding chr8:128428407 chr8:128428407 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_47277 0 0 0 0 0 exosome 0.500231648858966 0 0.84556914 0.000463297717931743 hm5C_site_2597 DeepMRMD:0.84556914;iRNA_m5C:0.000463297717931743 2598 chr4 1809378 1809378 1 + C A rs551739335 1809378 + 1809358 1809398 41 CTTTGCACCACGGGACATCACAGGGTGGGCCTCGGCCCCTC CTTTGCACCACGGGACATCAAAGGGTGGGCCTCGGCCCCTC Direct Loss 0.974273397637176 0 0.9406085 0 prediction 0.948546795274352 Functional Loss - FGFR3 ENSG00000068078 UTR3 Human protein_coding chr4:1809378 chr4:1809378 . . 0 21 hm5C_associated_SNPs_47278 0 0 1 0 0 Ribosome 0.500231643921119 0 0.881217 0.000463287842237925 hm5C_site_2598 DeepMRMD:0.881217;iRNA_m5C:0.000463287842237925 2599 chr4 38690545 38690545 1 + C T STAD 38690545 + 38690525 38690565 41 TGATGGCAGCTGCCCTCTCGCGGCATGGAATACGGAGCCCG TGATGGCAGCTGCCCTCTCGTGGCATGGAATACGGAGCCCG Direct Loss 0.974265984699178 0 0.90423584 0 prediction 0.948531969398356 Functional Loss - KLF3 ENSG00000109787 CDS Human protein_coding chr4:38690545 chr4:38690545 nonsynonymous SNV 0.038 3 21 hm5C_associated_SNPs_47279 0 0 1 0 0 Cytosol 0.500231643921093 0 0.80847168 0.000463287842186855 hm5C_site_2599 DeepMRMD:0.80847168;iRNA_m5C:0.000463287842186855 2600 chr15 89193571 89193571 1 + C T rs558899233 89193571 + 89193551 89193591 41 GGGAGGCGAGGCGAGGAACGCGGGGCTGGGGCAGTCACAGC GGGAGGCGAGGCGAGGAACGTGGGGCTGGGGCAGTCACAGC Direct Loss 0.974254406774745 0 0.92151994 0 prediction 0.948508813549489 Functional Loss - ISG20 ENSG00000172183 UTR3 Human protein_coding chr15:89193571 chr15:89193571 . . 0 21 hm5C_associated_SNPs_47280 0 0 0 0 0 Cytosol 0.500231643921231 0 0.84303988 0.000463287842461524 hm5C_site_2600 DeepMRMD:0.84303988;iRNA_m5C:0.000463287842461524 2601 chr5 76171199 76171199 1 + C T BLCA 76171199 + 76171179 76171219 41 GCCGACATGCCCACCCAGCTCGAGATGGCCATGGACACCAT GCCGACATGCCCACCCAGCTTGAGATGGCCATGGACACCAT Direct Loss 0.974250145138617 0 0.6975753 0 prediction 0.948500290277233 Functional Loss - S100Z ENSG00000171643 CDS Human protein_coding chr5:76171199 chr5:76171199 synonymous SNV . 0 21 hm5C_associated_SNPs_47281 0 0 0 0 0 exosome 0.500231554822788 0 0.3951506 0.000463109645575388 hm5C_site_2601 DeepMRMD:0.3951506;iRNA_m5C:0.000463109645575388 2602 chr16 84691083 84691083 1 + C T COAD 84691083 + 84691063 84691103 41 GGCTGACGCAGCAGCCCGAGCGCGAGGCCCACGCCCGCCAG GGCTGACGCAGCAGCCCGAGTGCGAGGCCCACGCCCGCCAG Direct Loss 0.97422536811381 0 0.93329656 0 prediction 0.948450736227619 Functional Loss - KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84691083 chr16:84691083 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_47282 0 0 1 0 0 chromatin 0.500231643826598 0 0.86659312 0.000463287653195144 hm5C_site_2602 DeepMRMD:0.86659312;iRNA_m5C:0.000463287653195144 2603 chr20 30672339 30672339 1 + C T COAD 30672339 + 30672319 30672359 41 GCTGGGCAGTTTGGGGAAGTCTGGATGGGTAAGGACCCAGG GCTGGGCAGTTTGGGGAAGTTTGGATGGGTAAGGACCCAGG Direct Loss 0.974210083285874 0 0.8894346 0 prediction 0.948420166571748 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30672339 chr20:30672339 synonymous SNV . 0 21 hm5C_associated_SNPs_47283 0 0 0 0 1 Nucleus 0.500231643921092 0 0.7788692 0.000463287842184856 hm5C_site_2603 DeepMRMD:0.7788692;iRNA_m5C:0.000463287842184856 2604 chr17 61907223 61907223 1 + C T LUSC 61907223 + 61907203 61907243 41 GCCATCTAGTTCGCCTATTGCGGGAGGAGCTACAGCTGCTG GCCATCTAGTTCGCCTATTGTGGGAGGAGCTACAGCTGCTG Direct Loss 0.974172512499803 0 0.92593396 0 prediction 0.948345024999605 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907223 chr17:61907223 nonsynonymous SNV 0.996 3 21 hm5C_associated_SNPs_47284 0 0 1 0 2 Ribosome 0.500231643967525 0 0.85186792 0.000463287935049683 hm5C_site_2604 DeepMRMD:0.85186792;iRNA_m5C:0.000463287935049683 2605 chr7 142962141 142962141 1 + C A CESC 142962141 + 142962121 142962161 41 ACTTGGAGCATCCAGAGATGCTGGAGAAAGCGTCCCGGGAG ACTTGGAGCATCCAGAGATGATGGAGAAAGCGTCCCGGGAG Direct Loss 0.974165811422641 0 0.8282771 0 prediction 0.948331622845281 Functional Loss - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142962141 chr7:142962141 nonsynonymous SNV 0.962 3 21 hm5C_associated_SNPs_47285 0 0 1 0 1 Endoplasmic reticulum 0.500231643907627 0 0.6565542 0.000463287815254176 hm5C_site_2605 DeepMRMD:0.6565542;iRNA_m5C:0.000463287815254176 2606 chr1 4715381 4715381 1 + C A rs534409884 4715381 + 4715361 4715401 41 GGCGGCGGGAGGCGGCGGACCGAGAGCCGGAGACCGGCGCC GGCGGCGGGAGGCGGCGGACAGAGAGCCGGAGACCGGCGCC Direct Loss 0.974149718463884 0 0.89732933 0 prediction 0.948299436927768 Functional Loss - AJAP1 ENSG00000196581 UTR5 Human protein_coding chr1:4715381 chr1:4715381 . . 0 21 hm5C_associated_SNPs_47286 0 0 0 0 0 exosome 0.500231665700607 0 0.79465866 0.000463331401213019 hm5C_site_2606 DeepMRMD:0.79465866;iRNA_m5C:0.000463331401213019 2607 chr22 45258386 45258386 1 + C T UCEC 45258386 + 45258366 45258406 41 GGAGCAGGGCAGCCCCTTTGCAGGAGGCTGTGCCACGGACA GGAGCAGGGCAGCCCCTTTGTAGGAGGCTGTGCCACGGACA Direct Loss 0.974138541598518 0 0.91815126 0 prediction 0.948277083197035 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45258386 chr22:45258386 stopgain 0.001 0 21 hm5C_associated_SNPs_47287 0 0 0 0 0 unknown 0.500231643921092 0 0.83630252 0.000463287842184856 hm5C_site_2607 DeepMRMD:0.83630252;iRNA_m5C:0.000463287842184856 2608 chr18 13826433 13826433 1 + C G LUAD 13826433 + 13826413 13826453 41 AAGCGGATCGCGGCTCTGCCCGGGGCCAGCTCTGCGCGGCA AAGCGGATCGCGGCTCTGCCGGGGGCCAGCTCTGCGCGGCA Direct Loss 0.974098488991308 0 0.91181386 0 prediction 0.948196977982616 Functional Loss - MC5R ENSG00000176136 CDS Human protein_coding chr18:13826433 chr18:13826433 synonymous SNV . 0 21 hm5C_associated_SNPs_47288 0 0 0 0 0 unknown 0.500231643921084 0 0.82362772 0.000463287842168869 hm5C_site_2608 DeepMRMD:0.82362772;iRNA_m5C:0.000463287842168869 2609 chr14 105865714 105865714 1 + C T CESC 105865714 + 105865694 105865734 41 TGTCCCCCCGGGGGAAGAAGCTGGAGTCGCACCTCTCCCAA TGTCCCCCCGGGGGAAGAAGTTGGAGTCGCACCTCTCCCAA Direct Loss 0.974089918900938 0 0.9321873 0 prediction 0.948179837801875 Functional Loss - TEX22 ENSG00000226174 CDS Human protein_coding chr14:105865714 chr14:105865714 synonymous SNV . 0 21 hm5C_associated_SNPs_47289 0 0 0 0 1 chromatin 0.500231643921092 0 0.8643746 0.000463287842184856 hm5C_site_2609 DeepMRMD:0.8643746;iRNA_m5C:0.000463287842184856 2610 chr2 114257044 114257044 1 + C T COAD 114257044 + 114257024 114257064 41 GGGGCGGGGTTGCGCTTCCCCGAGAGCACATCGAGGGCGGC GGGGCGGGGTTGCGCTTCCCTGAGAGCACATCGAGGGCGGC Direct Loss 0.974063655466016 0 0.8712445 0 prediction 0.948127310932032 Functional Loss - FOXD4L1 ENSG00000184492 CDS Human protein_coding chr2:114257044 chr2:114257044 stopgain 0.006 0 21 hm5C_associated_SNPs_47290 0 0 0 0 0 exosome 0.500231643875517 0 0.742489 0.000463287751034214 hm5C_site_2610 DeepMRMD:0.742489;iRNA_m5C:0.000463287751034214 2611 chr17 29036762 29036762 1 + C A rs577422641 29036762 + 29036742 29036782 41 GCTCCGGGAGATGTGCCGGGCGGGGGGCCCGGGTTCGCCGA GCTCCGGGAGATGTGCCGGGAGGGGGGCCCGGGTTCGCCGA Direct Loss 0.974059147096645 0 0.9272777 0 prediction 0.94811829419329 Functional Loss - SUZ12P1 ENSG00000264538 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:29036762 chr17:29036762 . . 0 21 hm5C_associated_SNPs_47291 0 0 0 0 1 unknown 0.500235590183687 0 0.8545554 0.000471180367374924 hm5C_site_2611 DeepMRMD:0.8545554;iRNA_m5C:0.000471180367374924 2612 chr6 114181628 114181628 1 + C T STAD 114181628 + 114181608 114181648 41 CGCCGGGCCCGGCGCGCCCCCGGAGCAGGAGGCAGCCCCCG CGCCGGGCCCGGCGCGCCCCTGGAGCAGGAGGCAGCCCCCG Direct Loss 0.974057382281234 0 0.9118534 0 prediction 0.948114764562469 Functional Loss - MARCKS ENSG00000155130 CDS Human other chr6:114181628 chr6:114181628 nonsynonymous SNV 0.064 0 21 hm5C_associated_SNPs_47292 0 0 1 0 0 Ribosome 0.500231643679053 0 0.8237068 0.000463287358105857 hm5C_site_2612 DeepMRMD:0.8237068;iRNA_m5C:0.000463287358105857 2613 chr1 71513137 71513137 1 + C T rs115304201 71513137 + 71513117 71513157 41 TCCGCAATCCTCGCCAGACCCTGGAGGGCGCGTGAGGTTGC TCCGCAATCCTCGCCAGACCTTGGAGGGCGCGTGAGGTTGC Direct Loss 0.974044302830704 0 0.5691967 0 prediction 0.948088605661408 Functional Loss - PTGER3 ENSG00000050628 CDS Human protein_coding chr1:71513137 chr1:71513137 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_47293 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.1383934 0.000463287842184856 hm5C_site_2613 DeepMRMD:0.1383934;iRNA_m5C:0.000463287842184856 2614 chr17 6927479 6927479 1 + C T STAD 6927479 + 6927459 6927499 41 TCTGCCCGGGGGTCCCGAAGCGAGAGGCTTCGCCCCTCTAT TCTGCCCGGGGGTCCCGAAGTGAGAGGCTTCGCCCCTCTAT Direct Loss 0.974002035392102 0 0.95813954 0 prediction 0.948004070784203 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927479 chr17:6927479 nonsynonymous SNV 0.975 1 21 hm5C_associated_SNPs_47294 0 0 0 0 1 Endoplasmic reticulum 0.5002238373318 0 0.91627908 0.000447674663599074 hm5C_site_2614 DeepMRMD:0.91627908;iRNA_m5C:0.000447674663599074 2615 chr7 142562446 142562446 1 + C T PRAD 142562446 + 142562426 142562466 41 GGCAAGTGGATGGTAGCTGTCGGGGGCTGCCGCTGCCAGCC GGCAAGTGGATGGTAGCTGTTGGGGGCTGCCGCTGCCAGCC Direct Loss 0.97400118569389 0 0.97486657 0 prediction 0.94800237138778 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142562446 chr7:142562446 synonymous SNV . 0 21 hm5C_associated_SNPs_47295 0 0 0 0 1 Endoplasmic reticulum 0.500231454596523 0 0.94973314 0.00046290919304548 hm5C_site_2615 DeepMRMD:0.94973314;iRNA_m5C:0.00046290919304548 2616 chr19 38755600 38755600 1 + C G CESC 38755600 + 38755580 38755620 41 GCTGGGATCGCTGCTCCTCTCTGGGGTCCTGGCGGCCGACC GCTGGGATCGCTGCTCCTCTGTGGGGTCCTGGCGGCCGACC Direct Loss 0.973979440832467 0 0.9000498 0 prediction 0.947958881664933 Functional Loss - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38755600 chr19:38755600 nonsynonymous SNV 0.384 0 21 hm5C_associated_SNPs_47296 0 0 1 0 1 Ribosome 0.500231642461093 0 0.8000996 0.000463284922185947 hm5C_site_2616 DeepMRMD:0.8000996;iRNA_m5C:0.000463284922185947 2617 chr4 94750450 94750450 1 + C T STAD 94750450 + 94750430 94750470 41 GCCCCGGGCCGGTGAAAGTGCGGGAACAGCTGTGCAAGCTG GCCCCGGGCCGGTGAAAGTGTGGGAACAGCTGTGCAAGCTG Direct Loss 0.973979378879425 0 0.8406939 0 prediction 0.947958757758849 Functional Loss - ATOH1 ENSG00000172238 CDS Human protein_coding chr4:94750450 chr4:94750450 nonsynonymous SNV 0.957 5 21 hm5C_associated_SNPs_47297 0 0 0 0 0 unknown 0.500231643765601 0 0.6813878 0.000463287531201173 hm5C_site_2617 DeepMRMD:0.6813878;iRNA_m5C:0.000463287531201173 2618 chr5 178391781 178391781 1 + C T UCEC 178391781 + 178391761 178391801 41 ACTGGAAGTGTGCTAGCCTGCTGGAGTGGCAATGTGGAGGC ACTGGAAGTGTGCTAGCCTGTTGGAGTGGCAATGTGGAGGC Direct Loss 0.973925959434032 0 0.29132915 0 prediction 0.947851918868065 Functional Loss - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178391781 chr5:178391781 synonymous SNV . 0 21 hm5C_associated_SNPs_47298 0 0 0 0 0 exosome 0.500231430030166 0 0 0.000462860060332915 hm5C_site_2618 DeepMRMD:0;iRNA_m5C:0.000462860060332915 2619 chr3 101498475 101498475 1 + C T rs547354485 101498475 + 101498455 101498495 41 GGGGCGGGGCGGGGCGGGGCCGGGAGCGAGCATCTCCATCC GGGGCGGGGCGGGGCGGGGCTGGGAGCGAGCATCTCCATCC Direct Loss 0.973920132244059 0 0.93650866 0 prediction 0.947840264488117 Functional Loss - NXPE3 ENSG00000144815 UTR5 Human protein_coding chr3:101498475 chr3:101498475 . . 0 21 hm5C_associated_SNPs_47299 0 0 0 0 0 Ribosome 0.500232951363915 0 0.87301732 0.000465902727830869 hm5C_site_2619 DeepMRMD:0.87301732;iRNA_m5C:0.000465902727830869 2620 chr4 17608478 17608478 1 + C T CESC 17608478 + 17608458 17608498 41 ATTGAAACAGGGGACCGTGTCTGGAGGATGCCTCTCTTCGA ATTGAAACAGGGGACCGTGTTTGGAGGATGCCTCTCTTCGA Direct Loss 0.973916756834835 0 0.8468182 0 prediction 0.947833513669669 Functional Loss - LAP3 ENSG00000002549 CDS Human protein_coding chr4:17608478 chr4:17608478 synonymous SNV . 0 21 hm5C_associated_SNPs_47300 0 0 1 0 2 Ribosome 0.50023164392109 0 0.6936364 0.000463287842180859 hm5C_site_2620 DeepMRMD:0.6936364;iRNA_m5C:0.000463287842180859 2621 chr19 50155936 50155936 1 + C T UCEC 50155936 + 50155916 50155956 41 CCTCCTCCTCCTCCTCTTCCCGGGAGAAGGGGTCTCGTCGG CCTCCTCCTCCTCCTCTTCCTGGGAGAAGGGGTCTCGTCGG Direct Loss 0.97389567672418 0 0.9342061 0 prediction 0.94779135344836 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50155936 chr19:50155936 nonsynonymous SNV 0.364 3 21 hm5C_associated_SNPs_47301 0 0 1 0 0 Cytosol 0.500231643644105 0 0.8684122 0.000463287288210434 hm5C_site_2621 DeepMRMD:0.8684122;iRNA_m5C:0.000463287288210434 2622 chr19 15164633 15164633 1 + C A KIRC 15164633 + 15164613 15164653 41 TTCGTGGTACTCATGGCTCACGGGAGGGAAGGCTTCCTCAA TTCGTGGTACTCATGGCTCAAGGGAGGGAAGGCTTCCTCAA Direct Loss 0.973891825139544 0 0.90381515 0 prediction 0.947783650279087 Functional Loss - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164633 chr19:15164633 nonsynonymous SNV 0.573 4 21 hm5C_associated_SNPs_47302 0 0 0 0 1 exosome 0.500231643921093 0 0.8076303 0.000463287842185967 hm5C_site_2622 DeepMRMD:0.8076303;iRNA_m5C:0.000463287842185967 2623 chr3 137484157 137484157 1 + C T COAD 137484157 + 137484137 137484177 41 GGCTACCAGAACGGCGCCTTCGGCAGCCTCAGCTGCCCCAG GGCTACCAGAACGGCGCCTTTGGCAGCCTCAGCTGCCCCAG Direct Loss 0.973877090700189 0 0.9272829 0 prediction 0.947754181400378 Functional Loss - SOX14 ENSG00000168875 CDS Human protein_coding chr3:137484157 chr3:137484157 synonymous SNV . 0 21 hm5C_associated_SNPs_47303 0 0 0 0 0 exosome 0.500231643920913 0 0.8545658 0.000463287841826254 hm5C_site_2623 DeepMRMD:0.8545658;iRNA_m5C:0.000463287841826254 2624 chr1 110996681 110996681 1 + C T COAD 110996681 + 110996661 110996701 41 ACCCCGCTGGGGCGGGAAGGCGAGGAGTGCCACCCCGGCAG ACCCCGCTGGGGCGGGAAGGTGAGGAGTGCCACCCCGGCAG Direct Loss 0.973854347813544 0 0.93184114 0 prediction 0.947708695627089 Functional Loss - PROK1 ENSG00000143125 CDS Human protein_coding chr1:110996681 chr1:110996681 synonymous SNV . 0 21 hm5C_associated_SNPs_47304 0 0 0 0 2 exosome 0.500231643921093 0 0.86368228 0.000463287842185078 hm5C_site_2624 DeepMRMD:0.86368228;iRNA_m5C:0.000463287842185078 2625 chr16 842518 842518 1 + C T rs35387463 842518 + 842498 842538 41 ACAGGGCCCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCC ACAGGGCCCGGCTGTGCCTTTGGGAGGCGGCCGACGGCGCC Direct Loss 0.973840611474947 0 0.9126345 0 prediction 0.947681222949894 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842518 chr16:842518 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47305 0 0 1 0 2 Nucleus 0.500231639213369 0 0.825269 0.000463278426737768 hm5C_site_2625 DeepMRMD:0.825269;iRNA_m5C:0.000463278426737768 2626 chr15 40675518 40675518 1 + C T LUAD 40675518 + 40675498 40675538 41 TGCGCTGAGCGGCGGCCAGCCGGCAGGTGAGGGTCCAAGCC TGCGCTGAGCGGCGGCCAGCTGGCAGGTGAGGGTCCAAGCC Direct Loss 0.973840439697852 0 0.91110885 0 prediction 0.947680879395704 Functional Loss - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40675518 chr15:40675518 nonsynonymous SNV 0.641 1 21 hm5C_associated_SNPs_47306 0 0 1 0 1 Ribosome 0.500231643921092 0 0.8222177 0.000463287842184856 hm5C_site_2626 DeepMRMD:0.8222177;iRNA_m5C:0.000463287842184856 2627 chrX 30269198 30269198 1 + C A LUSC 30269198 + 30269178 30269218 41 AGCAATGATTGGGACTTTCCCAGGAATGGGCTTCTGATGCC AGCAATGATTGGGACTTTCCAAGGAATGGGCTTCTGATGCC Direct Loss 0.973794635432424 0 0.9203357 0 prediction 0.947589270864849 Functional Loss - MAGEB1 ENSG00000214107 CDS Human protein_coding chrX:30269198 chrX:30269198 synonymous SNV . 0 21 hm5C_associated_SNPs_47307 0 0 0 0 0 nucleolus 0.500231643921092 0 0.8406714 0.000463287842184856 hm5C_site_2627 DeepMRMD:0.8406714;iRNA_m5C:0.000463287842184856 2628 chrX 149013213 149013213 1 + C A UCEC 149013213 + 149013193 149013233 41 CCTTGAGGAGGTGACTGATTCTGGGTCACCAAGTCCTCCCC CCTTGAGGAGGTGACTGATTATGGGTCACCAAGTCCTCCCC Direct Loss 0.973710849748776 0 0.9063053 0 prediction 0.947421699497552 Functional Loss - MAGEA8 ENSG00000156009 CDS Human protein_coding chrX:149013213 chrX:149013213 nonsynonymous SNV 0.004 2 21 hm5C_associated_SNPs_47308 0 0 0 0 0 exosome 0.500231643921092 0 0.8126106 0.000463287842184856 hm5C_site_2628 DeepMRMD:0.8126106;iRNA_m5C:0.000463287842184856 2629 chr2 216960749 216960749 1 + C T LUAD 216960749 + 216960729 216960769 41 AGCCCCCACCAGGGCTCTCTCAGGAAGGCTGTGGCTGCTGC AGCCCCCACCAGGGCTCTCTTAGGAAGGCTGTGGCTGCTGC Direct Loss 0.973667922172736 0 0.9200397 0 prediction 0.947335844345473 Functional Loss - TMEM169 ENSG00000163449 CDS Human protein_coding chr2:216960749 chr2:216960749 synonymous SNV . 0 21 hm5C_associated_SNPs_47309 0 0 0 0 0 Nucleus 0.500231643922772 0 0.8400794 0.000463287845543503 hm5C_site_2629 DeepMRMD:0.8400794;iRNA_m5C:0.000463287845543503 2630 chr5 141019656 141019656 1 + G A BLCA 141019656 - 141019636 141019676 41 GACCTGGGGCTGTGGCCTCTCAGGGGGCAGCCTCTCCATGG GACCTGGGGCTGTGGCCTCTTAGGGGGCAGCCTCTCCATGG Direct Loss 0.973662502720032 0 0.9668021 0 prediction 0.947325005440065 Functional Loss - RELL2 ENSG00000164620 CDS Human protein_coding chr5:141019656 chr5:141019656 nonsynonymous SNV 0.176 1 21 hm5C_associated_SNPs_47310 0 0 0 2 0 chromatin 0.50023163907631 0 0.9336042 0.000463278152620816 hm5C_site_2630 DeepMRMD:0.9336042;iRNA_m5C:0.000463278152620816 2631 chr13 79980452 79980452 1 + C G rs74100220 79980452 + 79980432 79980472 41 CGTAAGGTCGGCGGAGAATGCGCGGGTCGAGTGCTGTAGTT CGTAAGGTCGGCGGAGAATGGGCGGGTCGAGTGCTGTAGTT Direct Loss 0.973651201852928 0 0.87189436 0 prediction 0.947302403705855 Functional Loss - RBM26-AS1 ENSG00000227354 ncRNA_exonic Human antisense chr13:79980452 chr13:79980452 . . 0 21 hm5C_associated_SNPs_47311 0 0 1 0 0 unknown 0.500231639320096 0 0.74378872 0.000463278640191689 hm5C_site_2631 DeepMRMD:0.74378872;iRNA_m5C:0.000463278640191689 2632 chr8 28827820 28827820 1 + C T COAD 28827820 + 28827800 28827840 41 TTCCACACAGACGCAGCATTCGGGAATGTCCCCGTCACCTA TTCCACACAGACGCAGCATTTGGGAATGTCCCCGTCACCTA Direct Loss 0.97363128986867 0 0.90028286 0 prediction 0.94726257973734 Functional Loss - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28827820 chr8:28827820 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_47312 0 0 1 0 0 Nucleus 0.500231644063052 0 0.80056572 0.000463288126104855 hm5C_site_2632 DeepMRMD:0.80056572;iRNA_m5C:0.000463288126104855 2633 chr10 124907997 124907997 1 + C T UCEC 124907997 + 124907977 124908017 41 GGGGCCCCTCGGAGGCACCGCGGGAGCCCGTCGGCTGGCCA GGGGCCCCTCGGAGGCACCGTGGGAGCCCGTCGGCTGGCCA Direct Loss 0.973621235053647 0 0.9068464 0 prediction 0.947242470107293 Functional Loss - HMX2 ENSG00000188816 CDS Human protein_coding chr10:124907997 chr10:124907997 nonsynonymous SNV 0.953 4 21 hm5C_associated_SNPs_47313 0 0 0 0 0 exosome 0.50023164392109 0 0.8136928 0.000463287842179971 hm5C_site_2633 DeepMRMD:0.8136928;iRNA_m5C:0.000463287842179971 2634 chr8 26372040 26372040 1 + C A rs560053256 26372040 + 26372020 26372060 41 GCTCGGGGCAGGTGGTGGCTCAGCAGCGGGACGTCGCCCAC GCTCGGGGCAGGTGGTGGCTAAGCAGCGGGACGTCGCCCAC Direct Loss 0.973617243593192 0 0.6765007 0 prediction 0.947234487186384 Functional Loss - DPYSL2 ENSG00000092964 UTR5 Human protein_coding chr8:26372040 chr8:26372040 . . 0 21 hm5C_associated_SNPs_47314 0 0 0 0 0 Nucleus 0.500231643921163 0 0.3530014 0.000463287842326521 hm5C_site_2634 DeepMRMD:0.3530014;iRNA_m5C:0.000463287842326521 2635 chr14 31091558 31091558 1 + C T KIRP 31091558 + 31091538 31091578 41 AGCCAAGATGGCGGCGGCGGCGGCAGCGACAGCAGCAGCAG AGCCAAGATGGCGGCGGCGGTGGCAGCGACAGCAGCAGCAG Direct Loss 0.973614439922611 0 0.8906857 0 prediction 0.947228879845222 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31091558 chr14:31091558 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_47315 0 0 1 0 1 Cytosol 0.500231643904003 0 0.7813714 0.000463287808006418 hm5C_site_2635 DeepMRMD:0.7813714;iRNA_m5C:0.000463287808006418 Ischemic stroke 2636 chr7 99956578 99956578 1 + C T LUSC 99956578 + 99956558 99956598 41 GGTCAGGAGAGCGGCTTCCTCAGGATCTCAAACCTGCGGAA GGTCAGGAGAGCGGCTTCCTTAGGATCTCAAACCTGCGGAA Direct Loss 0.973580755682638 0 0.88887286 0 prediction 0.947161511365275 Functional Loss - PILRB ENSG00000121716 CDS Human protein_coding chr7:99956578 chr7:99956578 stopgain 0.022 0 21 hm5C_associated_SNPs_47316 0 0 1 0 0 Cytosol 0.500231643921084 0 0.77774572 0.000463287842167759 hm5C_site_2636 DeepMRMD:0.77774572;iRNA_m5C:0.000463287842167759 2637 chr1 158226686 158226686 1 + C T COAD 158226686 + 158226666 158226706 41 CCGTGTGGGTGATGTGGATGCGGGGTGAGCAGGAGCAGCAG CCGTGTGGGTGATGTGGATGTGGGGTGAGCAGGAGCAGCAG Direct Loss 0.973564856140744 0 0.9150205 0 prediction 0.947129712281488 Functional Loss - CD1A ENSG00000158477 CDS Human protein_coding chr1:158226686 chr1:158226686 nonsynonymous SNV 0.486 1 21 hm5C_associated_SNPs_47317 0 0 0 0 0 exosome 0.50023164357066 0 0.830041 0.000463287141319269 hm5C_site_2637 DeepMRMD:0.830041;iRNA_m5C:0.000463287141319269 2638 chr3 142840375 142840375 1 + C T COAD 142840375 + 142840355 142840395 41 TTGTATAGCCCCGCGGGCAGCGGGGGGCGCAACCTCACCAC TTGTATAGCCCCGCGGGCAGTGGGGGGCGCAACCTCACCAC Direct Loss 0.973549393532218 0 0.9397428 0 prediction 0.947098787064436 Functional Loss - CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840375 chr3:142840375 synonymous SNV . 0 21 hm5C_associated_SNPs_47318 0 0 1 0 0 cytosol 0.500231643921092 0 0.8794856 0.000463287842184856 hm5C_site_2638 DeepMRMD:0.8794856;iRNA_m5C:0.000463287842184856 2639 chrX 26212038 26212038 1 + C T STAD 26212038 + 26212018 26212058 41 AATGGTCAGCCACAGGGTCTCACGGGTCCCCAGGCCACTGC AATGGTCAGCCACAGGGTCTTACGGGTCCCCAGGCCACTGC Direct Loss 0.973532198637144 0 0.8956641 0 prediction 0.947064397274287 Functional Loss - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26212038 chrX:26212038 synonymous SNV . 0 21 hm5C_associated_SNPs_47319 0 0 0 0 0 unknown 0.500231643719886 0 0.7913282 0.000463287439772531 hm5C_site_2639 DeepMRMD:0.7913282;iRNA_m5C:0.000463287439772531 2640 chr4 165878186 165878186 1 + C T UCEC 165878186 + 165878166 165878206 41 CCACAGTGGATGGAAGGATGCGCGGTGCGGCGGGGCAGCTG CCACAGTGGATGGAAGGATGTGCGGTGCGGCGGGGCAGCTG Direct Loss 0.973517645813845 0 0.4963063 0 prediction 0.947035291627691 Functional Loss - FAM218A ENSG00000250486 CDS Human protein_coding chr4:165878186 chr4:165878186 synonymous SNV . 0 21 hm5C_associated_SNPs_47320 0 0 0 0 0 exosome 0.500231643920207 0 0 0.000463287840413606 hm5C_site_2640 DeepMRMD:0;iRNA_m5C:0.000463287840413606 2641 chr6 114181346 114181346 1 + C A LUAD 114181346 + 114181326 114181366 41 AGGCGGCAAGGACGAGGCCGCCGGGGGCGCAGCTGCGGCCG AGGCGGCAAGGACGAGGCCGACGGGGGCGCAGCTGCGGCCG Direct Loss 0.973517355719096 0 0.9136657 0 prediction 0.947034711438192 Functional Loss - MARCKS ENSG00000155130 CDS Human other chr6:114181346 chr6:114181346 nonsynonymous SNV 0.774 0 21 hm5C_associated_SNPs_47321 0 0 1 0 0 Ribosome 0.500231643920417 0 0.8273314 0.000463287840833271 hm5C_site_2641 DeepMRMD:0.8273314;iRNA_m5C:0.000463287840833271 2642 chr15 63893654 63893654 1 + C G rs369845869 63893654 + 63893634 63893674 41 GGGGCCAGGGCTGCCGCGCGCAGGGGTCTGGGGAGCCTCCG GGGGCCAGGGCTGCCGCGCGGAGGGGTCTGGGGAGCCTCCG Direct Loss 0.973509392100569 0 0.9374641 0 prediction 0.947018784201138 Functional Loss - FBXL22 ENSG00000197361 CDS Human protein_coding chr15:63893654 chr15:63893654 synonymous SNV . 0 21 hm5C_associated_SNPs_47322 0 0 0 0 0 Nucleus 0.500231643920994 0 0.8749282 0.000463287841988791 hm5C_site_2642 DeepMRMD:0.8749282;iRNA_m5C:0.000463287841988791 2643 chrX 3002622 3002622 1 + C T UCEC 3002622 + 3002602 3002642 41 ACTGGGACTGCCTCCTCATGCGGGGGCACGAGATCACGGAG ACTGGGACTGCCTCCTCATGTGGGGGCACGAGATCACGGAG Direct Loss 0.973496546133029 0 0.9493048 0 prediction 0.946993092266057 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3002622 chrX:3002622 nonsynonymous SNV 0.238 4 21 hm5C_associated_SNPs_47323 0 0 0 0 1 unknown 0.500178955885102 0 0.8986096 0.000357911770204611 hm5C_site_2643 DeepMRMD:0.8986096;iRNA_m5C:0.000357911770204611 2644 chr15 22743113 22743113 1 + C T rs565989121 22743113 + 22743093 22743133 41 AGGAGGAGAAGGTGTGGAGGCAGGAGGAGAAGATGCACGAC AGGAGGAGAAGGTGTGGAGGTAGGAGGAGAAGATGCACGAC Direct Loss 0.973485578392259 0 0.9038186 0 prediction 0.946971156784518 Functional Loss - GOLGA6L1;GOLGA6L22 ENSG00000197414 CDS Human other chr15:22743113 chr15:22743113 stopgain 0.001 0 21 hm5C_associated_SNPs_47324 0 0 0 0 0 unknown 0.500231643921092 0 0.8076372 0.000463287842184856 hm5C_site_2644 DeepMRMD:0.8076372;iRNA_m5C:0.000463287842184856 2645 chr15 63569813 63569813 1 + C A rs189409411 63569813 + 63569793 63569833 41 CGGGCCCCCGGGTCGGTTTCCGCGGTGGCCATGACTGCGGC CGGGCCCCCGGGTCGGTTTCAGCGGTGGCCATGACTGCGGC Direct Loss 0.973474160695232 0 0.92168427 0 prediction 0.946948321390463 Functional Loss - APH1B ENSG00000138613 UTR5 Human protein_coding chr15:63569813 chr15:63569813 . . 0 21 hm5C_associated_SNPs_47325 0 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0 0.84336854 0.000463287842185078 hm5C_site_2645 DeepMRMD:0.84336854;iRNA_m5C:0.000463287842185078 2646 chr6 26157013 26157013 1 + C T UCEC 26157013 + 26156993 26157033 41 GGCCAAGGCCAAGAAGCCAGCAGGAGCGGCGAAGAAGCCCA GGCCAAGGCCAAGAAGCCAGTAGGAGCGGCGAAGAAGCCCA Direct Loss 0.973468244075002 0 0.7430124 0 prediction 0.946936488150003 Functional Loss - HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26157013 chr6:26157013 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_47326 0 0 1 0 0 Ribosome 0.500231643921092 0 0.4860248 0.000463287842184856 hm5C_site_2646 DeepMRMD:0.4860248;iRNA_m5C:0.000463287842184856 2647 chr2 113763586 113763586 1 + C A BLCA 113763586 + 113763566 113763606 41 CACCTCAGCAGGGGAGCATTCAGGATATCAATCATCGGGTG CACCTCAGCAGGGGAGCATTAAGGATATCAATCATCGGGTG Direct Loss 0.973464330926358 0 0.917101 0 prediction 0.946928661852716 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763586 chr2:113763586 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_47327 0 0 0 0 2 exosome 0.500231643921092 0 0.834202 0.000463287842184856 hm5C_site_2647 DeepMRMD:0.834202;iRNA_m5C:0.000463287842184856 2648 chr19 49379062 49379062 1 + C G HNSC 49379062 + 49379042 49379082 41 GCCAGAGCCTGGGCACGCCTCAGGAACCCACCTTTAGCCCC GCCAGAGCCTGGGCACGCCTGAGGAACCCACCTTTAGCCCC Direct Loss 0.973447199204842 0 0.91650105 0 prediction 0.946894398409684 Functional Loss - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49379062 chr19:49379062 synonymous SNV . 0 21 hm5C_associated_SNPs_47328 0 0 1 0 0 Cytosol 0.500231643921095 0 0.8330021 0.000463287842190407 hm5C_site_2648 DeepMRMD:0.8330021;iRNA_m5C:0.000463287842190407 2649 chr8 117950739 117950739 1 + C A rs369425409 117950739 + 117950719 117950759 41 GCAGGAGGCGGCGGCGGCGGCGGCGGCGCGGGAGGAGCAGA GCAGGAGGCGGCGGCGGCGGAGGCGGCGCGGGAGGAGCAGA Direct Loss 0.973433464782719 0 0.93811333 0 prediction 0.946866929565438 Functional Loss - AARD ENSG00000205002 CDS Human protein_coding chr8:117950739 chr8:117950739 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_47329 0 0 0 0 1 exosome 0.500231643921092 0 0.87622666 0.000463287842184856 hm5C_site_2649 DeepMRMD:0.87622666;iRNA_m5C:0.000463287842184856 2650 chr3 4345184 4345184 1 + C T rs60314351 4345184 + 4345164 4345204 41 TGCCGGTGGGCGCGTGGCCCCCGGGGGCCGCGCCGGCGCCC TGCCGGTGGGCGCGTGGCCCTCGGGGGCCGCGCCGGCGCCC Direct Loss 0.973426654094664 0 0.9031975 0 prediction 0.946853308189328 Functional Loss - SETMAR ENSG00000170364 CDS Human protein_coding chr3:4345184 chr3:4345184 nonsynonymous SNV 0.028 0 21 hm5C_associated_SNPs_47330 0 0 1 0 1 Cytosol 0.500231643921104 0 0.806395 0.000463287842208615 hm5C_site_2650 DeepMRMD:0.806395;iRNA_m5C:0.000463287842208615 2651 chrX 38664370 38664370 1 + C T CESC 38664370 + 38664350 38664390 41 GATGTTGGCGTGGAGGTAGGCGGCAGTGGCGGCTGCCTGGA GATGTTGGCGTGGAGGTAGGTGGCAGTGGCGGCTGCCTGGA Direct Loss 0.973420129377384 0 0.90392286 0 prediction 0.946840258754767 Functional Loss - MID1IP1 ENSG00000165175 CDS Human protein_coding chrX:38664370 chrX:38664370 synonymous SNV . 0 21 hm5C_associated_SNPs_47331 0 0 1 0 0 cytosol 0.500231643921092 0 0.80784572 0.000463287842184856 hm5C_site_2651 DeepMRMD:0.80784572;iRNA_m5C:0.000463287842184856 2652 chr11 5443489 5443489 1 + C T LAML 5443489 + 5443469 5443509 41 CTTCATCCTCACGGACATCCCTGGATTTGAGGCCTCCCACA CTTCATCCTCACGGACATCCTTGGATTTGAGGCCTCCCACA Direct Loss 0.973417951305581 0 0.19559127 0 prediction 0.946835902611161 Functional Loss - OR51Q1 ENSG00000167360 CDS Human protein_coding chr11:5443489 chr11:5443489 nonsynonymous SNV 0.780 4 21 hm5C_associated_SNPs_47332 0 0 0 0 0 chromatin 0.500231643974133 0 0 0.000463287948266 hm5C_site_2652 DeepMRMD:0;iRNA_m5C:0.000463287948266 2653 chr3 49842192 49842192 1 + C T ACC 49842192 + 49842172 49842212 41 ACAGGGAGTGAAGGGGGTGACGGAGGTGGGCACCGTGCCCG ACAGGGAGTGAAGGGGGTGATGGAGGTGGGCACCGTGCCCG Direct Loss 0.973413595477739 0 0.9408171 0 prediction 0.946827190955478 Functional Loss - FAM212A ENSG00000185614 CDS Human protein_coding chr3:49842192 chr3:49842192 synonymous SNV . 0 21 hm5C_associated_SNPs_47333 0 0 0 0 0 exosome 0.500231561686882 0 0.8816342 0.000463123373763308 hm5C_site_2653 DeepMRMD:0.8816342;iRNA_m5C:0.000463123373763308 2654 chr7 154863195 154863195 1 + C T UCEC 154863195 + 154863175 154863215 41 GCGAGGAGTGCCAGGTAAGCCGCGAGCCTTCCTACGCCGTG GCGAGGAGTGCCAGGTAAGCTGCGAGCCTTCCTACGCCGTG Direct Loss 0.973389063661883 0 0.8300966 0 prediction 0.946778127323766 Functional Loss - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154863195 chr7:154863195 nonsynonymous SNV 0.972 4 21 hm5C_associated_SNPs_47334 0 0 0 0 0 exosome 0.50023162817109 0 0.6601932 0.000463256342180474 hm5C_site_2654 DeepMRMD:0.6601932;iRNA_m5C:0.000463256342180474 2655 chr17 51900872 51900872 1 + C T GBM 51900872 + 51900852 51900892 41 TCCAGAAACTGCAGGAGCAGCGGGAAAAGCGCAGGCGGCTG TCCAGAAACTGCAGGAGCAGTGGGAAAAGCGCAGGCGGCTG Direct Loss 0.973371508319962 0 0.8678413 0 prediction 0.946743016639923 Functional Loss - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51900872 chr17:51900872 nonsynonymous SNV 0.878 3 21 hm5C_associated_SNPs_47335 0 0 0 0 0 exosome 0.500237963873653 0 0.7356826 0.000475927747305205 hm5C_site_2655 DeepMRMD:0.7356826;iRNA_m5C:0.000475927747305205 2656 chrX 51486942 51486942 1 + C T UCEC 51486942 + 51486922 51486962 41 AGTTCGTGCCGTCCTTCCTGCGGGGCCCGACTCAGCCGCCC AGTTCGTGCCGTCCTTCCTGTGGGGCCCGACTCAGCCGCCC Direct Loss 0.973363023582199 0 0.8830043 0 prediction 0.946726047164398 Functional Loss - GSPT2 ENSG00000189369 CDS Human protein_coding chrX:51486942 chrX:51486942 nonsynonymous SNV 0.622 2 21 hm5C_associated_SNPs_47336 0 0 0 0 0 Cytosol 0.500231643921092 0 0.7660086 0.000463287842184856 hm5C_site_2656 DeepMRMD:0.7660086;iRNA_m5C:0.000463287842184856 2657 chr16 3707055 3707055 1 + C T STAD 3707055 + 3707035 3707075 41 GCCCCGGGGGACGCAGTAGCCGAGATCGACGCTCTCTATGA GCCCCGGGGGACGCAGTAGCTGAGATCGACGCTCTCTATGA Direct Loss 0.973355789794742 0 0.74687356 0 prediction 0.946711579589485 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707055 chr16:3707055 synonymous SNV . 0 21 hm5C_associated_SNPs_47337 0 0 0 0 2 Cytosol 0.500231643921237 0 0.49374712 0.00046328784247307 hm5C_site_2657 DeepMRMD:0.49374712;iRNA_m5C:0.00046328784247307 2658 chr20 39978986 39978986 1 + C G BLCA 39978986 + 39978966 39979006 41 AGTCATGGAGCTGGGCCACTCTGGAGGTTCCAGTTCCCACC AGTCATGGAGCTGGGCCACTGTGGAGGTTCCAGTTCCCACC Direct Loss 0.973340537639205 0 0.80138016 0 prediction 0.94668107527841 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39978986 chr20:39978986 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_47338 0 0 0 0 1 Nucleus 0.500231643921092 0 0.60276032 0.000463287842184856 hm5C_site_2658 DeepMRMD:0.60276032;iRNA_m5C:0.000463287842184856 2659 chr10 73115851 73115851 1 + C T CESC 73115851 + 73115831 73115871 41 TCTGCAGGAGGAGCCATGGGCGGGACGGTCAGCGCCGTGGC TCTGCAGGAGGAGCCATGGGTGGGACGGTCAGCGCCGTGGC Direct Loss 0.973339163092229 0 0.8938432 0 prediction 0.946678326184458 Functional Loss - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115851 chr10:73115851 synonymous SNV . 0 21 hm5C_associated_SNPs_47339 0 0 0 0 1 chromatin 0.500231634822207 0 0.7876864 0.000463269644414677 hm5C_site_2659 DeepMRMD:0.7876864;iRNA_m5C:0.000463269644414677 2660 chr4 151504852 151504852 1 + C T COAD 151504852 + 151504832 151504872 41 GCTGACCGGCAAGCAGAGCTCGGCAGAGAGCGACGCCTGGG GCTGACCGGCAAGCAGAGCTTGGCAGAGAGCGACGCCTGGG Direct Loss 0.973326204793019 0 0.8834141 0 prediction 0.946652409586038 Functional Loss - MAB21L2 ENSG00000181541 CDS Human protein_coding chr4:151504852 chr4:151504852 nonsynonymous SNV 0.987 2 21 hm5C_associated_SNPs_47340 0 0 1 0 0 nucleus 0.500231643920945 0 0.7668282 0.000463287841890203 hm5C_site_2660 DeepMRMD:0.7668282;iRNA_m5C:0.000463287841890203 2661 chr16 67183868 67183868 1 + G A UCEC 67183868 - 67183848 67183888 41 CGACGAAGTTGGGGAGGGCGCGCGAACCCACTGGCGCGCCC CGACGAAGTTGGGGAGGGCGTGCGAACCCACTGGCGCGCCC Direct Loss 0.973323358271481 0 0.89729595 0 prediction 0.946646716542963 Functional Loss - B3GNT9 ENSG00000237172 CDS Human protein_coding chr16:67183868 chr16:67183868 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47341 0 0 0 0 0 Ribosome 0.500231643900531 0 0.7945919 0.00046328780106264 hm5C_site_2661 DeepMRMD:0.7945919;iRNA_m5C:0.00046328780106264 2662 chr11 109294455 109294455 1 + C A LUAD 109294455 + 109294435 109294475 41 AACGCCAGCGGCAGCGGCAACACGGGTGCCCGCGGCCCAGG AACGCCAGCGGCAGCGGCAAAACGGGTGCCCGCGGCCCAGG Direct Loss 0.973316307904807 0 0.87356794 0 prediction 0.946632615809615 Functional Loss - C11orf87 ENSG00000185742 CDS Human protein_coding chr11:109294455 chr11:109294455 nonsynonymous SNV 0.051 1 21 hm5C_associated_SNPs_47342 0 0 0 0 0 exosome 0.500231643921092 0 0.74713588 0.000463287842184856 hm5C_site_2662 DeepMRMD:0.74713588;iRNA_m5C:0.000463287842184856 2663 chrX 7811724 7811724 1 + C A LUAD 7811724 + 7811704 7811744 41 CCGCCGGAGGAGCCAGTGAGCGAGGGGACCCAGCACGACCC CCGCCGGAGGAGCCAGTGAGAGAGGGGACCCAGCACGACCC Direct Loss 0.97328480045746 0 0.928406 0 prediction 0.946569600914921 Functional Loss - VCX ENSG00000182583 CDS Human protein_coding chrX:7811724 chrX:7811724 nonsynonymous SNV 0.007 0 21 hm5C_associated_SNPs_47343 0 0 0 0 0 unknown 0.500231643921092 0 0.856812 0.000463287842184856 hm5C_site_2663 DeepMRMD:0.856812;iRNA_m5C:0.000463287842184856 2664 chr22 42475829 42475829 1 + C T BLCA 42475829 + 42475809 42475849 41 CCCGTCAGGTCCGGGGCTCTCCGGAGCGGGCCTAGCTTGAG CCCGTCAGGTCCGGGGCTCTTCGGAGCGGGCCTAGCTTGAG Direct Loss 0.973283517820029 0 0.86649185 0 prediction 0.946567035640058 Functional Loss - SMDT1 ENSG00000183172 CDS Human protein_coding chr22:42475829 chr22:42475829 synonymous SNV . 0 21 hm5C_associated_SNPs_47344 0 0 1 0 0 Cytosol 0.500231643598803 0 0.7329837 0.00046328719760691 hm5C_site_2664 DeepMRMD:0.7329837;iRNA_m5C:0.00046328719760691 2665 chr20 57598917 57598917 1 + C T COAD 57598917 + 57598897 57598937 41 CTGGGCGGGGGCACAGGCTCCGGGATGGGCACTCTGCTCAT CTGGGCGGGGGCACAGGCTCTGGGATGGGCACTCTGCTCAT Direct Loss 0.973276904972915 0 0.9003008 0 prediction 0.94655380994583 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598917 chr20:57598917 synonymous SNV . 0 21 hm5C_associated_SNPs_47345 0 0 1 0 0 Cytosol 0.500231643921094 0 0.8006016 0.000463287842187077 hm5C_site_2665 DeepMRMD:0.8006016;iRNA_m5C:0.000463287842187077 2666 chr7 99662422 99662422 1 + C T BRCA 99662422 + 99662402 99662442 41 AGGAGGTCCTCAGAAGGTGTCAGGAGGTTCCACACTCGCCA AGGAGGTCCTCAGAAGGTGTTAGGAGGTTCCACACTCGCCA Direct Loss 0.973268879497037 0 0.90583694 0 prediction 0.946537758994073 Functional Loss - ZNF3 ENSG00000166526 CDS Human protein_coding chr7:99662422 chr7:99662422 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47346 0 0 0 0 0 Nucleus 0.500231644848355 0 0.81167388 0.000463289696709834 hm5C_site_2666 DeepMRMD:0.81167388;iRNA_m5C:0.000463289696709834 2667 chrX 30236764 30236764 1 + C T OV 30236764 + 30236744 30236784 41 GCAAGGCCCGAGATGAGACCCGGGGTCTCAATGTTCCTCAG GCAAGGCCCGAGATGAGACCTGGGGTCTCAATGTTCCTCAG Direct Loss 0.973263593746409 0 0.89051163 0 prediction 0.946527187492819 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236764 chrX:30236764 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_47347 0 0 0 0 1 exosome 0.500231643589216 0 0.78102326 0.000463287178431804 hm5C_site_2667 DeepMRMD:0.78102326;iRNA_m5C:0.000463287178431804 2668 chr5 179264579 179264579 1 + C A UCEC 179264579 + 179264559 179264599 41 GGCCCGAGGAAGCTGGACAGCGGCAGTGGGCCTGCTGAGGC GGCCCGAGGAAGCTGGACAGAGGCAGTGGGCCTGCTGAGGC Direct Loss 0.973249562104679 0 0.8732004 0 prediction 0.946499124209358 Functional Loss - MRNIP ENSG00000161010 CDS Human protein_coding chr5:179264579 chr5:179264579 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47348 0 0 1 0 0 unknown 0.500231641370652 0 0.7464008 0.000463282741303139 hm5C_site_2668 DeepMRMD:0.7464008;iRNA_m5C:0.000463282741303139 2669 chr15 65157203 65157203 1 + C T rs192226449 65157203 + 65157183 65157223 41 ATGTCAGTGAAGCCCAACCTCGGGAGACACCCCGGCCCCTC ATGTCAGTGAAGCCCAACCTTGGGAGACACCCCGGCCCCTC Direct Loss 0.97324189923325 0 0.94105595 0 prediction 0.946483798466499 Functional Loss - PLEKHO2 ENSG00000241839 CDS Human protein_coding chr15:65157203 chr15:65157203 nonsynonymous SNV 0.198 1 21 hm5C_associated_SNPs_47349 0 0 0 0 0 chromatin 0.500231645038155 0 0.8821119 0.000463290076309741 hm5C_site_2669 DeepMRMD:0.8821119;iRNA_m5C:0.000463290076309741 2670 chr9 841979 841979 1 + C T STAD 841979 + 841959 841999 41 GCGGCCAGCGGCTCGAGCGCCGGGGGCAGCAGCAGAGGAGG GCGGCCAGCGGCTCGAGCGCTGGGGGCAGCAGCAGAGGAGG Direct Loss 0.973238722342792 0 0.9249723 0 prediction 0.946477444685583 Functional Loss - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:841979 chr9:841979 synonymous SNV . 0 21 hm5C_associated_SNPs_47350 0 0 0 0 0 unknown 0.500231643952559 0 0.8499446 0.000463287905118293 hm5C_site_2670 DeepMRMD:0.8499446;iRNA_m5C:0.000463287905118293 2671 chr19 1440079 1440079 1 + C T UCEC 1440079 + 1440059 1440099 41 GGCTGAACCGGGGCCTGCGGCGGAAGCAGCACTCCCTGCTG GGCTGAACCGGGGCCTGCGGTGGAAGCAGCACTCCCTGCTG Direct Loss 0.973212564780408 0 0.9181402 0 prediction 0.946425129560817 Functional Loss - RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440079 chr19:1440079 nonsynonymous SNV 0.968 0 21 hm5C_associated_SNPs_47351 0 0 1 0 1 Ribosome 0.500238733161187 0 0.8362804 0.000477466322373665 hm5C_site_2671 DeepMRMD:0.8362804;iRNA_m5C:0.000477466322373665 2672 chr7 155090019 155090019 1 + C T BLCA 155090019 + 155089999 155090039 41 CCCAGATTGCACGACCACTTCTGGAGCTGCTCCTGTGCGCA CCCAGATTGCACGACCACTTTTGGAGCTGCTCCTGTGCGCA Direct Loss 0.973199543669681 0 0.59157985 0 prediction 0.946399087339362 Functional Loss - INSIG1 ENSG00000186480 CDS Human protein_coding chr7:155090019 chr7:155090019 synonymous SNV . 0 21 hm5C_associated_SNPs_47352 0 0 1 0 1 Endoplasmic reticulum 0.50023155707593 0 0.1831597 0.000463114151859179 hm5C_site_2672 DeepMRMD:0.1831597;iRNA_m5C:0.000463114151859179 2673 chr15 91500425 91500425 1 + C T CESC 91500425 + 91500405 91500445 41 TGGGCCTCGGAGGGGCTCCTCGCGGTGCTGCGCGCCGGGCC TGGGCCTCGGAGGGGCTCCTTGCGGTGCTGCGCGCCGGGCC Direct Loss 0.973196086294514 0 0.8895544 0 prediction 0.946392172589028 Functional Loss - RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91500425 chr15:91500425 synonymous SNV . 0 21 hm5C_associated_SNPs_47353 0 0 1 0 1 Ribosome 0.500231643921121 0 0.7791088 0.000463287842241256 hm5C_site_2673 DeepMRMD:0.7791088;iRNA_m5C:0.000463287842241256 2674 chr1 1431369 1431369 1 + C T rs140821046 1431369 + 1431349 1431389 41 GGCAGAAGGAGTGGGGCAGGCGGGGTCTTTGTTCTCGGCTC GGCAGAAGGAGTGGGGCAGGTGGGGTCTTTGTTCTCGGCTC Direct Loss 0.973189254303562 0 0.90885556 0 prediction 0.946378508607124 Functional Loss - ATAD3B ENSG00000160072 UTR3 Human protein_coding chr1:1431369 chr1:1431369 . . 0 21 hm5C_associated_SNPs_47354 0 0 1 0 0 Ribosome 0.500231643921065 0 0.81771112 0.000463287842129123 hm5C_site_2674 DeepMRMD:0.81771112;iRNA_m5C:0.000463287842129123 2675 chr15 23810997 23810997 1 + C T LUAD 23810997 + 23810977 23811017 41 CCAGGCAGGTGCTGAGGCAGCAAGGGAGGGTGTGTCTGGGC CCAGGCAGGTGCTGAGGCAGTAAGGGAGGGTGTGTCTGGGC Direct Loss 0.973185966082125 0 0.9051418 0 prediction 0.94637193216425 Functional Loss - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23810997 chr15:23810997 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_47355 0 0 0 0 0 chromatin 0.500231643870373 0 0.8102836 0.000463287740745555 hm5C_site_2675 DeepMRMD:0.8102836;iRNA_m5C:0.000463287740745555 2676 chr8 56015173 56015173 1 + C T STAD 56015173 + 56015153 56015193 41 TCCAGGCTTGCCGTCGGGGTCGGGAGCCGAGGACGAGGAGG TCCAGGCTTGCCGTCGGGGTTGGGAGCCGAGGACGAGGAGG Direct Loss 0.973178783203768 0 0.9332441 0 prediction 0.946357566407536 Functional Loss - XKR4 ENSG00000206579 CDS Human protein_coding chr8:56015173 chr8:56015173 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_47356 0 0 0 0 0 exosome 0.500231643913432 0 0.8664882 0.000463287826864667 hm5C_site_2676 DeepMRMD:0.8664882;iRNA_m5C:0.000463287826864667 2677 chr3 100148673 100148673 1 + C T SKCM 100148673 + 100148653 100148693 41 AGGAGGATCAGAGAGGACTCCGGGAACGCCACCGACTGCAA AGGAGGATCAGAGAGGACTCTGGGAACGCCACCGACTGCAA Direct Loss 0.973156913720589 0 0.90628135 0 prediction 0.946313827441179 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100148673 chr3:100148673 nonsynonymous SNV 0.738 3 21 hm5C_associated_SNPs_47357 0 0 0 1 1 chromatin 0.500231643926972 0 0.8125627 0.000463287853944783 hm5C_site_2677 DeepMRMD:0.8125627;iRNA_m5C:0.000463287853944783 2678 chr14 24838937 24838937 1 + C T rs55651033 24838937 + 24838917 24838957 41 GCTGGGGGTGGCCGTGTTCTCGAGTGTCCCAGCATCCGCAT GCTGGGGGTGGCCGTGTTCTTGAGTGTCCCAGCATCCGCAT Direct Loss 0.973139441249037 0 0.93642044 0 prediction 0.946278882498074 Functional Loss - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24838937 chr14:24838937 synonymous SNV . 0 21 hm5C_associated_SNPs_47358 0 0 0 0 0 cytosol 0.500231645251733 0 0.87284088 0.000463290503465386 hm5C_site_2678 DeepMRMD:0.87284088;iRNA_m5C:0.000463290503465386 2679 chrX 13588040 13588040 1 + C T SKCM 13588040 + 13588020 13588060 41 TCCTGGGTGGCAGGTGGTTTCGGGAACGCGGCCAGGTGAGT TCCTGGGTGGCAGGTGGTTTTGGGAACGCGGCCAGGTGAGT Direct Loss 0.973134268368691 0 0.9186139 0 prediction 0.946268536737382 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13588040 chrX:13588040 synonymous SNV . 0 21 hm5C_associated_SNPs_47359 0 0 0 0 1 exosome 0.500231643921089 0 0.8372278 0.000463287842177973 hm5C_site_2679 DeepMRMD:0.8372278;iRNA_m5C:0.000463287842177973 2680 chr3 112064109 112064109 1 + C T BLCA 112064109 + 112064089 112064129 41 CTTTGGTTTTGGGAAGATCTCAGGAACGGCCTGCCTCACCG CTTTGGTTTTGGGAAGATCTTAGGAACGGCCTGCCTCACCG Direct Loss 0.973128604170581 0 0.9077031 0 prediction 0.946257208341162 Functional Loss - CD200 ENSG00000091972 CDS Human protein_coding chr3:112064109 chr3:112064109 nonsynonymous SNV 0.964 4 21 hm5C_associated_SNPs_47360 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0 0.8154062 0.000463287842184856 hm5C_site_2680 DeepMRMD:0.8154062;iRNA_m5C:0.000463287842184856 2681 chrX 82763567 82763567 1 + C A LUAD 82763567 + 82763547 82763587 41 CCACCAGCCCCCTGGACCAGCAGGACGTGAAGCCCGGGCGC CCACCAGCCCCCTGGACCAGAAGGACGTGAAGCCCGGGCGC Direct Loss 0.973111858689369 0 0.9124768 0 prediction 0.946223717378737 Functional Loss - POU3F4 ENSG00000196767 CDS Human protein_coding chrX:82763567 chrX:82763567 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_47361 0 0 0 0 0 unknown 0.500231643921092 0 0.8249536 0.000463287842184856 hm5C_site_2681 DeepMRMD:0.8249536;iRNA_m5C:0.000463287842184856 2682 chr8 146278000 146278000 1 + C T rs139779460 146278000 + 146277980 146278020 41 ACATCTTGCTGGGGAGGCAGCGGCGGCCCCAGGCCCGGGTA ACATCTTGCTGGGGAGGCAGTGGCGGCCCCAGGCCCGGGTA Direct Loss 0.973105147019839 0 0.93848634 0 prediction 0.946210294039679 Functional Loss - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278000 chr8:146278000 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_47362 0 0 1 0 1 Ribosome 0.500231643921093 0 0.87697268 0.0004632878421853 hm5C_site_2682 DeepMRMD:0.87697268;iRNA_m5C:0.0004632878421853 2683 chr3 50614558 50614558 1 + C G CESC 50614558 + 50614538 50614578 41 CCCCAGGCAGCCCCCTCATTCTGGAGGTGGGCTGCGGATCA CCCCAGGCAGCCCCCTCATTGTGGAGGTGGGCTGCGGATCA Direct Loss 0.973104239171425 0 0.88173425 0 prediction 0.94620847834285 Functional Loss - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614558 chr3:50614558 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_47363 0 0 0 0 2 Ribosome 0.500231643921092 0 0.7634685 0.000463287842184856 hm5C_site_2683 DeepMRMD:0.7634685;iRNA_m5C:0.000463287842184856 2684 chr15 71300833 71300833 1 + C T SKCM 71300833 + 71300813 71300853 41 GCTCAGGAGCACTGGAATCTCTGGATAGGAATTGGAGTGTT GCTCAGGAGCACTGGAATCTTTGGATAGGAATTGGAGTGTT Direct Loss 0.973095279044159 0 0.40877476 0 prediction 0.946190558088318 Functional Loss - LRRC49 ENSG00000137821 CDS Human protein_coding chr15:71300833 chr15:71300833 synonymous SNV . 0 21 hm5C_associated_SNPs_47364 0 0 1 0 0 nucleus 0.500231643921092 0 0 0.000463287842184856 hm5C_site_2684 DeepMRMD:0;iRNA_m5C:0.000463287842184856 2685 chr1 11808642 11808642 1 + C T COAD 11808642 + 11808622 11808662 41 TACCACATGTACCGGGAGCGCGGGGGTGAGCTCCTGGTCCA TACCACATGTACCGGGAGCGTGGGGGTGAGCTCCTGGTCCA Direct Loss 0.973082691188369 0 0.94610596 0 prediction 0.946165382376737 Functional Loss - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808642 chr1:11808642 nonsynonymous SNV 0.878 1 21 hm5C_associated_SNPs_47365 0 0 1 0 2 Ribosome 0.500231644520633 0 0.89221192 0.000463289041265913 hm5C_site_2685 DeepMRMD:0.89221192;iRNA_m5C:0.000463289041265913 2686 chr1 7845005 7845005 1 + C T UCEC 7845005 + 7844985 7845025 41 CGAGGCCCTGGGCGAAGAATCGGGGGAGCGGTGGAGCCCCG CGAGGCCCTGGGCGAAGAATTGGGGGAGCGGTGGAGCCCCG Direct Loss 0.973063160529104 0 0.9434857 0 prediction 0.946126321058209 Functional Loss - PER3 ENSG00000049246 CDS Human protein_coding chr1:7845005 chr1:7845005 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47366 0 0 0 0 1 chromatin 0.500231643850038 0 0.8869714 0.000463287700075199 hm5C_site_2686 DeepMRMD:0.8869714;iRNA_m5C:0.000463287700075199 2687 chr4 134073362 134073362 1 + C T STAD 134073362 + 134073342 134073382 41 GTGGAGCCCCAGGGCGGGGGCGGGAGCGGAGGCGGAGGGTC GTGGAGCCCCAGGGCGGGGGTGGGAGCGGAGGCGGAGGGTC Direct Loss 0.97306238477891 0 0.9113558 0 prediction 0.94612476955782 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134073362 chr4:134073362 synonymous SNV . 0 21 hm5C_associated_SNPs_47367 0 0 0 0 0 cytosol 0.500231643921092 0 0.8227116 0.000463287842184856 hm5C_site_2687 DeepMRMD:0.8227116;iRNA_m5C:0.000463287842184856 2688 chr19 41949983 41949983 1 + C T rs111840261 41949983 + 41949963 41950003 41 GGCTGGAGATGGGGGCGCTGCGGGAGGAACTGGTCACCATA GGCTGGAGATGGGGGCGCTGTGGGAGGAACTGGTCACCATA Direct Loss 0.973061117140514 0 0.90869874 0 prediction 0.946122234281029 Functional Loss - ERICH4 ENSG00000204978 CDS Human protein_coding chr19:41949983 chr19:41949983 nonsynonymous SNV 0.034 2 21 hm5C_associated_SNPs_47368 0 0 0 0 1 exosome 0.500231643921092 0 0.81739748 0.000463287842184856 hm5C_site_2688 DeepMRMD:0.81739748;iRNA_m5C:0.000463287842184856 2689 chr8 20054936 20054936 1 + C G PAAD 20054936 + 20054916 20054956 41 AGATGGCGCTGCGGGCGATGCGGGGGATTGTCAACGGGGCC AGATGGCGCTGCGGGCGATGGGGGGGATTGTCAACGGGGCC Direct Loss 0.973053864824503 0 0.90690804 0 prediction 0.946107729649007 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20054936 chr8:20054936 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_47369 0 0 1 0 0 Ribosome 0.50023164392149 0 0.81381608 0.000463287842979998 hm5C_site_2689 DeepMRMD:0.81381608;iRNA_m5C:0.000463287842979998 2690 chr3 128780696 128780696 1 + C T STAD 128780696 + 128780676 128780716 41 ATGGGGCTGTGGGTGGACTGCAGGGGCCACGGACTCACGGC ATGGGGCTGTGGGTGGACTGTAGGGGCCACGGACTCACGGC Direct Loss 0.973047517160577 0 0.9445727 0 prediction 0.946095034321155 Functional Loss - GP9 ENSG00000169704 CDS Human protein_coding chr3:128780696 chr3:128780696 synonymous SNV . 0 21 hm5C_associated_SNPs_47370 0 0 0 0 0 Endoplasmic reticulum 0.500231644202209 0 0.8891454 0.000463288404418671 hm5C_site_2690 DeepMRMD:0.8891454;iRNA_m5C:0.000463288404418671 2691 chr19 51769091 51769091 1 + C T COAD 51769091 + 51769071 51769111 41 GATCCAGGGTGCTATCTATGCGGGAATTGTAATTGCGCTGC GATCCAGGGTGCTATCTATGTGGGAATTGTAATTGCGCTGC Direct Loss 0.97304248473441 0 0.8020841 0 prediction 0.946084969468821 Functional Loss - SIGLECL1 ENSG00000179213 CDS Human protein_coding chr19:51769091 chr19:51769091 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47371 0 0 0 1 2 unknown 0.500232279576019 0 0.6041682 0.000464559152038913 hm5C_site_2691 DeepMRMD:0.6041682;iRNA_m5C:0.000464559152038913 2692 chr8 24771385 24771385 1 + G A STAD 24771385 - 24771365 24771405 41 ACTGGACGGGGAGCCGCTGACGCGGCTGAAGCTCGAGCGGG ACTGGACGGGGAGCCGCTGATGCGGCTGAAGCTCGAGCGGG Direct Loss 0.973038311223973 0 0.8592838 0 prediction 0.946076622447946 Functional Loss - NEFM ENSG00000104722 CDS Human protein_coding chr8:24771385 chr8:24771385 nonsynonymous SNV 0.393 2 21 hm5C_associated_SNPs_47372 0 0 0 0 0 exosome 0.500231643910782 0 0.7185676 0.000463287821564906 hm5C_site_2692 DeepMRMD:0.7185676;iRNA_m5C:0.000463287821564906 2693 chr19 35842700 35842700 1 + C T SKCM 35842700 + 35842680 35842720 41 GCCTCGCTGTGCCCCGTCTTCGCGGTGGCCCACTTCTTCCC GCCTCGCTGTGCCCCGTCTTTGCGGTGGCCCACTTCTTCCC Direct Loss 0.973021387922494 0 0.8792083 0 prediction 0.946042775844989 Functional Loss - FFAR1 ENSG00000126266 CDS Human protein_coding chr19:35842700 chr19:35842700 synonymous SNV . 0 21 hm5C_associated_SNPs_47373 0 0 0 0 0 exosome 0.500231643921584 0 0.7584166 0.000463287843168736 hm5C_site_2693 DeepMRMD:0.7584166;iRNA_m5C:0.000463287843168736 2694 chr3 129023621 129023621 1 + C A READ 129023621 + 129023601 129023641 41 TCCTAGAGCAATGGCTGAAGCGGGAGAAGGAGGAGGAACCT TCCTAGAGCAATGGCTGAAGAGGGAGAAGGAGGAGGAACCT Direct Loss 0.973019638472425 0 0.91565895 0 prediction 0.94603927694485 Functional Loss - HMCES ENSG00000183624 CDS Human protein_coding chr3:129023621 chr3:129023621 synonymous SNV . 0 21 hm5C_associated_SNPs_47374 0 0 1 0 0 Ribosome 0.500231661572089 0 0.8313179 0.000463323144177741 hm5C_site_2694 DeepMRMD:0.8313179;iRNA_m5C:0.000463323144177741 2695 chr6 74073416 74073416 1 + C A UCEC 74073416 + 74073396 74073436 41 CCCAGCGTTCGGTGGAAGTCCAGGAGGTCGGGACACAGGGT CCCAGCGTTCGGTGGAAGTCAAGGAGGTCGGGACACAGGGT Direct Loss 0.972997313516622 0 0.90124047 0 prediction 0.945994627033244 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74073416 chr6:74073416 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_47375 0 0 0 0 0 unknown 0.500231643838532 0 0.80248094 0.000463287677063606 hm5C_site_2695 DeepMRMD:0.80248094;iRNA_m5C:0.000463287677063606 2696 chr19 1434806 1434806 1 + C T STAD 1434806 + 1434786 1434826 41 AGCCAGCAGCCTCCTTCCTACGGGGGTCCCTCCGTGCCAGG AGCCAGCAGCCTCCTTCCTATGGGGGTCCCTCCGTGCCAGG Direct Loss 0.972986176483532 0 0.93506676 0 prediction 0.945972352967065 Functional Loss - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434806 chr19:1434806 synonymous SNV . 0 21 hm5C_associated_SNPs_47376 0 0 1 0 1 chromatin 0.500231643921092 0 0.87013352 0.000463287842184856 hm5C_site_2696 DeepMRMD:0.87013352;iRNA_m5C:0.000463287842184856 2697 chrX 118708868 118708868 1 + C T DLBC 118708868 + 118708848 118708888 41 GTCTGTCTTCCCGAAGGTTGCAGGAGGATCCTCCAGCCGGA GTCTGTCTTCCCGAAGGTTGTAGGAGGATCCTCCAGCCGGA Direct Loss 0.972918815761479 0 0.9427378 0 prediction 0.945837631522958 Functional Loss - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118708868 chrX:118708868 stopgain 0.988 1 21 hm5C_associated_SNPs_47377 0 0 1 0 2 Ribosome 0.500231643924044 0 0.8854756 0.00046328784808769 hm5C_site_2697 DeepMRMD:0.8854756;iRNA_m5C:0.00046328784808769 2698 chr8 65494391 65494391 1 + G A STAD 65494391 - 65494371 65494411 41 GGGGGCAGTCCGGCGCTGAACGGGTAGCCGGCTGCCTGCTC GGGGGCAGTCCGGCGCTGAATGGGTAGCCGGCTGCCTGCTC Direct Loss 0.972911359822918 0 0.90526354 0 prediction 0.945822719645836 Functional Loss - BHLHE22 ENSG00000180828 CDS Human protein_coding chr8:65494391 chr8:65494391 synonymous SNV . 0 21 hm5C_associated_SNPs_47378 0 0 0 0 0 exosome 0.500231643921092 0 0.81052708 0.000463287842184856 hm5C_site_2698 DeepMRMD:0.81052708;iRNA_m5C:0.000463287842184856 2699 chr7 150267004 150267004 1 + C G OV 150267004 + 150266984 150267024 41 GCGACAATGGCAGCCCAATACGGCAGTATGAGCTTCAACCC GCGACAATGGCAGCCCAATAGGGCAGTATGAGCTTCAACCC Direct Loss 0.972864158756895 0 0.18480253 0 prediction 0.94572831751379 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267004 chr7:150267004 stopgain 0.000 0 21 hm5C_associated_SNPs_47379 0 0 0 0 3 exosome 0.50023164391206 0 0 0.000463287824120862 hm5C_site_2699 DeepMRMD:0;iRNA_m5C:0.000463287824120862 2700 chr2 74757166 74757166 1 + C A GBM 74757166 + 74757146 74757186 41 AGGGCGGGGCGGGGTGCAGGCTGGAGCCTTCGGGCATGGCG AGGGCGGGGCGGGGTGCAGGATGGAGCCTTCGGGCATGGCG Direct Loss 0.972852370562461 0 0.66574836 0 prediction 0.945704741124921 Functional Loss - HTRA2 ENSG00000115317 CDS Human protein_coding chr2:74757166 chr2:74757166 synonymous SNV . 0 21 hm5C_associated_SNPs_47380 0 0 1 0 0 exosome 0.500231643921091 0 0.33149672 0.000463287842182192 hm5C_site_2700 DeepMRMD:0.33149672;iRNA_m5C:0.000463287842182192 2701 chr14 23303981 23303981 1 + C T rs61608320 23303981 + 23303961 23304001 41 GCAGGAGAATCGCTTAAACTCGGGAGGTAGAGGTTGCAGTG GCAGGAGAATCGCTTAAACTTGGGAGGTAGAGGTTGCAGTG Direct Loss 0.97283743549098 0 0.95022804 0 prediction 0.945674870981959 Functional Loss - MRPL52 ENSG00000172590 UTR3 Human protein_coding chr14:23303981 chr14:23303981 . . 0 21 hm5C_associated_SNPs_47381 0 0 1 0 0 Ribosome 0.500231643921092 0 0.90045608 0.000463287842184856 hm5C_site_2701 DeepMRMD:0.90045608;iRNA_m5C:0.000463287842184856 2702 chr15 44829397 44829397 1 + C A LUAD 44829397 + 44829377 44829417 41 TCACACCCGGCTCGAGATGGCGGCGGCGGCGGCGGCGGCGG TCACACCCGGCTCGAGATGGAGGCGGCGGCGGCGGCGGCGG Direct Loss 0.972815703367696 0 0.8988979 0 prediction 0.945631406735392 Functional Loss - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44829397 chr15:44829397 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_47382 0 0 1 0 1 Ribosome 0.50023164698363 0 0.7977958 0.00046329396725997 hm5C_site_2702 DeepMRMD:0.7977958;iRNA_m5C:0.00046329396725997 2703 chrX 102632528 102632528 1 + C A HNSC 102632528 + 102632508 102632548 41 ACCAGCCTGCAGGAAATCGACGGGGACAGGCTCGCCGACTT ACCAGCCTGCAGGAAATCGAAGGGGACAGGCTCGCCGACTT Direct Loss 0.972800670619791 0 0.9271346 0 prediction 0.945601341239583 Functional Loss - BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632528 chrX:102632528 synonymous SNV . 0 21 hm5C_associated_SNPs_47383 0 0 1 0 1 Cytosol 0.500231651380217 0 0.8542692 0.000463302760433937 hm5C_site_2703 DeepMRMD:0.8542692;iRNA_m5C:0.000463302760433937 2704 chr6 74073548 74073548 1 + C T KIRC 74073548 + 74073528 74073568 41 AGGCAGTGACCCAGCGGTTTCGCGAGGATGCCCGGGACCCA AGGCAGTGACCCAGCGGTTTTGCGAGGATGCCCGGGACCCA Direct Loss 0.972782917751671 0 0.8735865 0 prediction 0.945565835503343 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74073548 chr6:74073548 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_47384 0 0 0 0 0 unknown 0.50023162419892 0 0.747173 0.000463248397839955 hm5C_site_2704 DeepMRMD:0.747173;iRNA_m5C:0.000463248397839955 2705 chr15 75047255 75047255 1 + C T GBM 75047255 + 75047235 75047275 41 ATGGGCAAGCGCCGGTGTATCGGGGAAGTCCTGGCCAAGTG ATGGGCAAGCGCCGGTGTATTGGGGAAGTCCTGGCCAAGTG Direct Loss 0.972780918752559 0 0.9344603 0 prediction 0.945561837505117 Functional Loss - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75047255 chr15:75047255 synonymous SNV . 0 21 hm5C_associated_SNPs_47385 0 0 0 0 0 Nucleus 0.500231643922789 0 0.8689206 0.000463287845578586 hm5C_site_2705 DeepMRMD:0.8689206;iRNA_m5C:0.000463287845578586 2706 chr7 150034401 150034401 1 + C T UCEC 150034401 + 150034381 150034421 41 CCTCCTACTGGGCTGCAGTCCGGGAGCTGCTGCCTGGCCTG CCTCCTACTGGGCTGCAGTCTGGGAGCTGCTGCCTGGCCTG Direct Loss 0.972764044499755 0 0.92169744 0 prediction 0.945528088999511 Functional Loss - LRRC61 ENSG00000127399 CDS Human protein_coding chr7:150034401 chr7:150034401 nonsynonymous SNV 0.943 0 21 hm5C_associated_SNPs_47386 0 0 1 0 0 Cytosol 0.500231643920663 0 0.84339488 0.00046328784132621 hm5C_site_2706 DeepMRMD:0.84339488;iRNA_m5C:0.00046328784132621 2707 chr22 45691472 45691472 1 + C G BLCA 45691472 + 45691452 45691492 41 GTTCTGATGGGGAAACGACTCACGACTCCCAAATCACTCAG GTTCTGATGGGGAAACGACTGACGACTCCCAAATCACTCAG Direct Loss 0.972743861255828 0 0.031202823 0 prediction 0.945487722511656 Functional Loss - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45691472 chr22:45691472 nonsynonymous SNV 0.791 4 21 hm5C_associated_SNPs_47387 0 0 0 0 1 exosome 0.500231643201652 0 0 0.00046328640330362 hm5C_site_2707 DeepMRMD:0;iRNA_m5C:0.00046328640330362 2708 chr6 28227198 28227198 1 + C T COAD 28227198 + 28227178 28227218 41 CCGAGGACATCGTGGGCTCTCGGAGAAGGCGACGCAGCTCC CCGAGGACATCGTGGGCTCTTGGAGAAGGCGACGCAGCTCC Direct Loss 0.972740470225663 0 0.9341468 0 prediction 0.945480940451325 Functional Loss - NKAPL ENSG00000189134 CDS Human protein_coding chr6:28227198 chr6:28227198 nonsynonymous SNV 0.004 2 21 hm5C_associated_SNPs_47388 0 0 0 0 0 exosome 0.500231643705093 0 0.8682936 0.000463287410186197 hm5C_site_2708 DeepMRMD:0.8682936;iRNA_m5C:0.000463287410186197 2709 chr22 43678119 43678119 1 + C T rs567944105 43678119 + 43678099 43678139 41 GTTGAGAAGGGCACCGGGGACGGGAGAGGCAGTGGCCCCAG GTTGAGAAGGGCACCGGGGATGGGAGAGGCAGTGGCCCCAG Direct Loss 0.972727920300078 0 0.9254354 0 prediction 0.945455840600155 Functional Loss - LOC101927447 ENSG00000203527 ncRNA_exonic Human antisense chr22:43678119 chr22:43678119 . . 0 21 hm5C_associated_SNPs_47389 0 0 0 0 0 unknown 0.500231808432663 0 0.8508708 0.000463616865325145 hm5C_site_2709 DeepMRMD:0.8508708;iRNA_m5C:0.000463616865325145 2710 chr1 247752384 247752384 1 + C T BRCA 247752384 + 247752364 247752404 41 ACCAGGAGACAGAAAGCATTCGGGACCTGCTTCTCCCACCT ACCAGGAGACAGAAAGCATTTGGGACCTGCTTCTCCCACCT Direct Loss 0.972717981185105 0 0.8915423 0 prediction 0.945435962370211 Functional Loss - OR2G2 ENSG00000177489 CDS Human protein_coding chr1:247752384 chr1:247752384 synonymous SNV . 0 21 hm5C_associated_SNPs_47390 0 0 0 0 0 unknown 0.500231643921093 0 0.7830846 0.000463287842185078 hm5C_site_2710 DeepMRMD:0.7830846;iRNA_m5C:0.000463287842185078 2711 chr1 234509472 234509472 1 + C T SKCM 234509472 + 234509452 234509492 41 GCGCGCGTGGACTATGGGCCCGGGAGGTCCCTTACTGTCCC GCGCGCGTGGACTATGGGCCTGGGAGGTCCCTTACTGTCCC Direct Loss 0.972706202139089 0 0.8994763 0 prediction 0.945412404278178 Functional Loss - COA6 ENSG00000168275 CDS Human protein_coding chr1:234509472 chr1:234509472 nonsynonymous SNV 0.120 1 21 hm5C_associated_SNPs_47391 0 0 1 0 0 Cytosol 0.500231643945667 0 0.7989526 0.000463287891334874 hm5C_site_2711 DeepMRMD:0.7989526;iRNA_m5C:0.000463287891334874 2712 chr3 101395563 101395563 1 + G A rs61735374 101395563 - 101395543 101395583 41 TCGCGGAGCTGGAGGTGGTGCTGCAGCCGGAGCGACGCCGG TCGCGGAGCTGGAGGTGGTGTTGCAGCCGGAGCGACGCCGG Direct Loss 0.972673127693836 0 0.70829564 0 prediction 0.945346255387672 Functional Loss - ZBTB11 ENSG00000066422 CDS Human protein_coding chr3:101395563 chr3:101395563 synonymous SNV . 0 21 hm5C_associated_SNPs_47392 0 0 1 0 0 Nucleus 0.500231696154376 0 0.41659128 0.000463392308752697 hm5C_site_2712 DeepMRMD:0.41659128;iRNA_m5C:0.000463392308752697 2713 chr11 60689539 60689539 1 + C T UCEC 60689539 + 60689519 60689559 41 CCCGAGCCTCTGGGGCCCAACTCGAGGCCAAGGTGCGAGGG CCCGAGCCTCTGGGGCCCAATTCGAGGCCAAGGTGCGAGGG Direct Loss 0.972660471443829 0 0.92435086 0 prediction 0.945320942887659 Functional Loss - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60689539 chr11:60689539 nonsynonymous SNV 0.183 3 21 hm5C_associated_SNPs_47393 0 0 1 0 0 Ribosome 0.500231643921092 0 0.84870172 0.000463287842184856 hm5C_site_2713 DeepMRMD:0.84870172;iRNA_m5C:0.000463287842184856 2714 chr7 150069696 150069696 1 + G A CESC 150069696 - 150069676 150069716 41 GGGACACACGAAGGGCCGATCGGGGGCGTGGTCGCGCCGAT GGGACACACGAAGGGCCGATTGGGGGCGTGGTCGCGCCGAT Direct Loss 0.972617484198629 0 0.9551923 0 prediction 0.945234968397257 Functional Loss - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150069696 chr7:150069696 nonsynonymous SNV 0.295 1 21 hm5C_associated_SNPs_47394 0 0 0 0 0 Endoplasmic reticulum 0.500231644002471 0 0.9103846 0.000463288004941331 hm5C_site_2714 DeepMRMD:0.9103846;iRNA_m5C:0.000463288004941331 2715 chr1 152883138 152883138 1 + C G SARC 152883138 + 152883118 152883158 41 AGCTGAAGTACCTGGAACAGCAGGAGGGGCAGCTGAAGCAC AGCTGAAGTACCTGGAACAGGAGGAGGGGCAGCTGAAGCAC Direct Loss 0.972580269693774 0 0.8765683 0 prediction 0.945160539387548 Functional Loss - IVL ENSG00000163207 CDS Human protein_coding chr1:152883138 chr1:152883138 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_47395 0 0 0 0 0 unknown 0.500231101479944 0 0.7531366 0.000462202959887081 hm5C_site_2715 DeepMRMD:0.7531366;iRNA_m5C:0.000462202959887081 2716 chr19 51981876 51981876 1 + C A UCEC 51981876 + 51981856 51981896 41 CTCTGGAGGGACCCCTCCTCCTGGAGGACCCCAGGCAGCTC CTCTGGAGGGACCCCTCCTCATGGAGGACCCCAGGCAGCTC Direct Loss 0.972559885954878 0 0.83147985 0 prediction 0.945119771909755 Functional Loss - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51981876 chr19:51981876 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_47396 0 0 0 0 1 unknown 0.500231643850332 0 0.6629597 0.000463287700664061 hm5C_site_2716 DeepMRMD:0.6629597;iRNA_m5C:0.000463287700664061 2717 chr7 102715804 102715804 1 + C T rs7798381 102715804 + 102715784 102715824 41 ACTGCATTTACAGGCTGACCCGGGGTCGGCGGCGGGGCGAC ACTGCATTTACAGGCTGACCTGGGGTCGGCGGCGGGGCGAC Direct Loss 0.972556929264679 0 0.93472475 0 prediction 0.945113858529358 Functional Loss - ARMC10 ENSG00000170632 CDS Human protein_coding chr7:102715804 chr7:102715804 nonsynonymous SNV 0.021 2 21 hm5C_associated_SNPs_47397 0 0 0 0 1 Ribosome 0.500231643921093 0 0.8694495 0.000463287842185744 hm5C_site_2717 DeepMRMD:0.8694495;iRNA_m5C:0.000463287842185744 2718 chrX 30268663 30268663 1 + C T CESC 30268663 + 30268643 30268683 41 TCGTGAGAAACGCCGCAAGGCGCGAGAGGAGACCCAGGGTC TCGTGAGAAACGCCGCAAGGTGCGAGAGGAGACCCAGGGTC Direct Loss 0.972554741888997 0 0.32021523 0 prediction 0.945109483777993 Functional Loss - MAGEB1 ENSG00000214107 CDS Human protein_coding chrX:30268663 chrX:30268663 nonsynonymous SNV 0.162 0 21 hm5C_associated_SNPs_47398 0 0 0 0 0 nucleolus 0.500231643921092 0 0 0.000463287842184856 hm5C_site_2718 DeepMRMD:0;iRNA_m5C:0.000463287842184856 2719 chr2 70122303 70122303 1 + C T UCEC 70122303 + 70122283 70122323 41 CCAGGTCTCGGGAGAGAGATCGGAGAAGGAGCCGCTCGCGA CCAGGTCTCGGGAGAGAGATTGGAGAAGGAGCCGCTCGCGA Direct Loss 0.972538949755274 0 0.9272214 0 prediction 0.945077899510548 Functional Loss - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122303 chr2:70122303 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_47399 0 0 1 0 2 Ribosome 0.500231643921092 0 0.8544428 0.000463287842184856 hm5C_site_2719 DeepMRMD:0.8544428;iRNA_m5C:0.000463287842184856 2720 chr8 72756371 72756371 1 + G A PRAD 72756371 - 72756351 72756391 41 ATCCGGAGGAGATGGAGCTTCGGGGGCTGCAGCGGGAGTAC ATCCGGAGGAGATGGAGCTTTGGGGGCTGCAGCGGGAGTAC Direct Loss 0.97252323195066 0 0.91862863 0 prediction 0.945046463901321 Functional Loss - MSC ENSG00000178860 CDS Human protein_coding chr8:72756371 chr8:72756371 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_47400 0 0 0 0 0 exosome 0.500231643922554 0 0.83725726 0.000463287845108296 hm5C_site_2720 DeepMRMD:0.83725726;iRNA_m5C:0.000463287845108296 2721 chrX 34961603 34961603 1 + C T COAD 34961603 + 34961583 34961623 41 GCCCAGAGCCTCCCAAGACTCGGGTGTCCAGTCTCCGCCCA GCCCAGAGCCTCCCAAGACTTGGGTGTCCAGTCTCCGCCCA Direct Loss 0.972521086287849 0 0.92754996 0 prediction 0.945042172575699 Functional Loss - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961603 chrX:34961603 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_47401 0 0 0 0 0 unknown 0.500231643921602 0 0.85509992 0.000463287843203597 hm5C_site_2721 DeepMRMD:0.85509992;iRNA_m5C:0.000463287843203597 2722 chr5 121187902 121187902 1 + C A UCEC 121187902 + 121187882 121187922 41 ACTCCGAGGCTGCCATCAACCGCCAGATCAACCTCGAGCTC ACTCCGAGGCTGCCATCAACAGCCAGATCAACCTCGAGCTC Direct Loss 0.972506036138276 0 0.58003205 0 prediction 0.945012072276552 Functional Loss - FTMT ENSG00000181867 CDS Human protein_coding chr5:121187902 chr5:121187902 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_47402 0 0 0 0 0 unknown 0.500231884354091 0 0.1600641 0.000463768708182544 hm5C_site_2722 DeepMRMD:0.1600641;iRNA_m5C:0.000463768708182544 2723 chr19 42828914 42828914 1 + C T UCEC 42828914 + 42828894 42828934 41 GCCCCGAGCGGCGCCGGATTCTGGGCTCCCGCTGTTCCGTG GCCCCGAGCGGCGCCGGATTTTGGGCTCCCGCTGTTCCGTG Direct Loss 0.972489062874034 0 0.8867361 0 prediction 0.944978125748068 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42828914 chr19:42828914 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_47403 0 0 1 0 1 nucleoplasm 0.500231643918469 0 0.7734722 0.000463287836938608 hm5C_site_2723 DeepMRMD:0.7734722;iRNA_m5C:0.000463287836938608 2724 chr19 39423210 39423210 1 + C A MESO 39423210 + 39423190 39423230 41 CGAGGCCGTCTGCTTCATCCCTGGGGAGGGCCACACCCTGC CGAGGCCGTCTGCTTCATCCATGGGGAGGGCCACACCCTGC Direct Loss 0.972446648575381 0 0.32987934 0 prediction 0.944893297150762 Functional Loss - MRPS12 ENSG00000128626 CDS Human protein_coding chr19:39423210 chr19:39423210 nonsynonymous SNV 0.980 4 21 hm5C_associated_SNPs_47404 0 0 1 0 0 Ribosome 0.500231643921093 0 0 0.000463287842186855 hm5C_site_2724 DeepMRMD:0;iRNA_m5C:0.000463287842186855 2725 chr1 62677585 62677585 1 + C T rs191202337 62677585 + 62677565 62677605 41 AGGCGGAGCTTGCAGTGAGCCGAGATCACACCACTGCACTC AGGCGGAGCTTGCAGTGAGCTGAGATCACACCACTGCACTC Direct Loss 0.972415428782162 0 0.89514726 0 prediction 0.944830857564324 Functional Loss - L1TD1 ENSG00000240563 UTR3 Human protein_coding chr1:62677585 chr1:62677585 . . 0 21 hm5C_associated_SNPs_47405 0 0 0 0 0 Nucleus 0.500231739211471 0 0.79029452 0.00046347842294181 hm5C_site_2725 DeepMRMD:0.79029452;iRNA_m5C:0.00046347842294181 2726 chr1 4715217 4715217 1 + C G rs529023924 4715217 + 4715197 4715237 41 GTGCCGCCGGCGGAGGGGGCCGCGAGCCCCGCGCCCCGGCC GTGCCGCCGGCGGAGGGGGCGGCGAGCCCCGCGCCCCGGCC Direct Loss 0.972400714117523 0 0.908901 0 prediction 0.944801428235047 Functional Loss - AJAP1 ENSG00000196581 UTR5 Human protein_coding chr1:4715217 chr1:4715217 . . 0 21 hm5C_associated_SNPs_47406 0 0 0 0 0 exosome 0.500231643921135 0 0.817802 0.000463287842270121 hm5C_site_2726 DeepMRMD:0.817802;iRNA_m5C:0.000463287842270121 2727 chr1 210012275 210012275 1 + C T LUSC 210012275 + 210012255 210012295 41 TACTGATAGTGGTGCCATTCCGGGAAGCTGCTTTGCGGGTG TACTGATAGTGGTGCCATTCTGGGAAGCTGCTTTGCGGGTG Direct Loss 0.972392447334246 0 0.88177466 0 prediction 0.944784894668492 Functional Loss - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210012275 chr1:210012275 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_47407 0 0 1 0 1 Cytosol 0.500231643921092 0 0.76354932 0.000463287842184856 hm5C_site_2727 DeepMRMD:0.76354932;iRNA_m5C:0.000463287842184856 2728 chrX 118370488 118370488 1 + C T UCEC 118370488 + 118370468 118370508 41 GGGGACCAGCCGGCGGCCAGCGGCGACAGCGACGACGACGA GGGGACCAGCCGGCGGCCAGTGGCGACAGCGACGACGACGA Direct Loss 0.972387721159858 0 0.42606422 0 prediction 0.944775442319715 Functional Loss - PGRMC1 ENSG00000101856 CDS Human protein_coding chrX:118370488 chrX:118370488 synonymous SNV . 0 21 hm5C_associated_SNPs_47408 0 0 1 0 0 Ribosome 0.500231644496984 0 0 0.000463288993968636 hm5C_site_2728 DeepMRMD:0;iRNA_m5C:0.000463288993968636 2729 chr22 20760082 20760082 1 + C T UCEC 20760082 + 20760062 20760102 41 GAGTTCGTGTGCGGCGAGTGCGGGAAGGCGTTCCGCCAGAG GAGTTCGTGTGCGGCGAGTGTGGGAAGGCGTTCCGCCAGAG Direct Loss 0.972379830426827 0 0.90034866 0 prediction 0.944759660853653 Functional Loss - ZNF74 ENSG00000185252 CDS Human protein_coding chr22:20760082 chr22:20760082 synonymous SNV . 0 21 hm5C_associated_SNPs_47409 0 0 1 0 0 Cytosol 0.500231643915281 0 0.80069732 0.00046328783056282 hm5C_site_2729 DeepMRMD:0.80069732;iRNA_m5C:0.00046328783056282 2730 chr6 80341034 80341034 1 + C T rs531750767 80341034 + 80341014 80341054 41 GCTTTTATCTGCGGACCCGCCGGGAGGGAGCCAGATCCCAG GCTTTTATCTGCGGACCCGCTGGGAGGGAGCCAGATCCCAG Direct Loss 0.972379736635011 0 0.81323224 0 prediction 0.944759473270022 Functional Loss - SH3BGRL2 ENSG00000198478 UTR5 Human protein_coding chr6:80341034 chr6:80341034 . . 0 21 hm5C_associated_SNPs_47410 0 0 1 0 0 Ribosome 0.500231643922938 0 0.62646448 0.000463287845875904 hm5C_site_2730 DeepMRMD:0.62646448;iRNA_m5C:0.000463287845875904 2731 chr7 100779051 100779051 1 + C T PAAD 100779051 + 100779031 100779071 41 AAAGTGAAGATCGAGGTGAACGAGAGTGGCACGGTGGCCTC AAAGTGAAGATCGAGGTGAATGAGAGTGGCACGGTGGCCTC Direct Loss 0.972370570690026 0 0.86948127 0 prediction 0.944741141380051 Functional Loss - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100779051 chr7:100779051 synonymous SNV . 0 21 hm5C_associated_SNPs_47411 0 0 1 0 2 Ribosome 0.500231642866731 0 0.73896254 0.000463285733462993 hm5C_site_2731 DeepMRMD:0.73896254;iRNA_m5C:0.000463285733462993 2732 chr1 99469999 99469999 1 + C T STAD 99469999 + 99469979 99470019 41 CCCCGGGCTTACCACGAGCACGGGGACCCCGGCGGCCAGCG CCCCGGGCTTACCACGAGCATGGGGACCCCGGCGGCCAGCG Direct Loss 0.972364898294705 0 0.91064984 0 prediction 0.944729796589411 Functional Loss - PLPPR5 ENSG00000117598 CDS Human protein_coding chr1:99469999 chr1:99469999 nonsynonymous SNV 0.960 3 21 hm5C_associated_SNPs_47412 0 0 0 0 0 unknown 0.500231643921092 0 0.82129968 0.000463287842184856 hm5C_site_2732 DeepMRMD:0.82129968;iRNA_m5C:0.000463287842184856 2733 chr5 33937052 33937052 1 + C T UCS 33937052 + 33937032 33937072 41 GGACATCCCCCGGGCAGCGGCGGGGCAGAGAGCGCGGACAC GGACATCCCCCGGGCAGCGGTGGGGCAGAGAGCGCGGACAC Direct Loss 0.972335548215098 0 0.8594427 0 prediction 0.944671096430197 Functional Loss - RXFP3 ENSG00000182631 CDS Human protein_coding chr5:33937052 chr5:33937052 synonymous SNV . 0 21 hm5C_associated_SNPs_47413 0 0 0 0 0 unknown 0.500231606418287 0 0.7188854 0.000463212836573801 hm5C_site_2733 DeepMRMD:0.7188854;iRNA_m5C:0.000463212836573801 2734 chr16 30094990 30094990 1 + C T COAD 30094990 + 30094970 30095010 41 CTGTAGATCTTCTGCGTGCACGGGGGCCTCTCCCCCTCCAT CTGTAGATCTTCTGCGTGCATGGGGGCCTCTCCCCCTCCAT Direct Loss 0.9723350042542 0 0.95154905 0 prediction 0.944670008508401 Functional Loss - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30094990 chr16:30094990 synonymous SNV . 0 21 hm5C_associated_SNPs_47414 0 0 1 0 1 Ribosome 0.500231643914298 0 0.9030981 0.00046328782859506 hm5C_site_2734 DeepMRMD:0.9030981;iRNA_m5C:0.00046328782859506 2735 chr19 58966705 58966705 1 + C T BLCA 58966705 + 58966685 58966725 41 AACCGGGTGCCTCCCCATCTCAGGAGAGAAAACCCACGGGG AACCGGGTGCCTCCCCATCTTAGGAGAGAAAACCCACGGGG Direct Loss 0.972331976486932 0 0.93371606 0 prediction 0.944663952973864 Functional Loss - ZNF324B ENSG00000249471 CDS Human protein_coding chr19:58966705 chr19:58966705 stopgain 0.010 0 21 hm5C_associated_SNPs_47415 0 0 0 0 0 exosome 0.500231643921092 0 0.86743212 0.000463287842184856 hm5C_site_2735 DeepMRMD:0.86743212;iRNA_m5C:0.000463287842184856 2736 chr12 117187928 117187928 1 + C A rs182109617 117187928 + 117187908 117187948 41 TTCCACCATGGCGGCCACCGCGGGGGCTCCCTGCTGCAGCA TTCCACCATGGCGGCCACCGAGGGGGCTCCCTGCTGCAGCA Direct Loss 0.972326783365553 0 0.93613505 0 prediction 0.944653566731107 Functional Loss - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117187928 chr12:117187928 synonymous SNV . 0 21 hm5C_associated_SNPs_47416 0 0 0 0 0 Ribosome 0.500231643921102 0 0.8722701 0.000463287842204618 hm5C_site_2736 DeepMRMD:0.8722701;iRNA_m5C:0.000463287842204618 2737 chr17 20224654 20224654 1 + C T COAD 20224654 + 20224634 20224674 41 TCTCCTGGGGTGGAGAAAAGCGGGGAGGGGCTGAGGGGTCT TCTCCTGGGGTGGAGAAAAGTGGGGAGGGGCTGAGGGGTCT Direct Loss 0.972313507325446 0 0.9200926 0 prediction 0.944627014650892 Functional Loss - CCDC144CP ENSG00000154898 ncRNA_exonic Human transcribed_processed_pseudogene chr17:20224654 chr17:20224654 . . 0 21 hm5C_associated_SNPs_47417 0 0 0 0 0 unknown 0.500231643921092 0 0.8401852 0.000463287842184856 hm5C_site_2737 DeepMRMD:0.8401852;iRNA_m5C:0.000463287842184856 2738 chr12 56515350 56515350 1 + C T COAD 56515350 + 56515330 56515370 41 GCAAGAACTGGTGGCCCCTGCTGGAGCTCCAGCTGCTCCCC GCAAGAACTGGTGGCCCCTGTTGGAGCTCCAGCTGCTCCCC Direct Loss 0.972308218582211 0 0.9086814 0 prediction 0.944616437164422 Functional Loss - ZC3H10 ENSG00000135482 CDS Human protein_coding chr12:56515350 chr12:56515350 nonsynonymous SNV 0.987 1 21 hm5C_associated_SNPs_47418 0 0 0 0 0 Ribosome 0.500231645124372 0 0.8173628 0.000463290248743586 hm5C_site_2738 DeepMRMD:0.8173628;iRNA_m5C:0.000463290248743586 2739 chr2 182322430 182322430 1 + C T STAD 182322430 + 182322410 182322450 41 GCCCCCGAAGGGCCGCCGTCCGGGAGACGGTGATGCTGTTG GCCCCCGAAGGGCCGCCGTCTGGGAGACGGTGATGCTGTTG Direct Loss 0.972291694408109 0 0.9120514 0 prediction 0.944583388816217 Functional Loss - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182322430 chr2:182322430 nonsynonymous SNV 0.092 1 21 hm5C_associated_SNPs_47419 0 0 0 0 0 exosome 0.500231645792042 0 0.8241028 0.000463291584084979 hm5C_site_2739 DeepMRMD:0.8241028;iRNA_m5C:0.000463291584084979 2740 chr1 152648670 152648670 1 + C A UCEC 152648670 + 152648650 152648690 41 GAGCTGCTGTGGTCCCAGCTCTGGGGGCTGCTGCAGCTCTG GAGCTGCTGTGGTCCCAGCTATGGGGGCTGCTGCAGCTCTG Direct Loss 0.972227212075497 0 0.90613246 0 prediction 0.944454424150993 Functional Loss - LCE2C ENSG00000187180 CDS Human protein_coding chr1:152648670 chr1:152648670 nonsynonymous SNV 0.902 2 21 hm5C_associated_SNPs_47420 0 0 0 0 0 exosome 0.500231643921196 0 0.81226492 0.000463287842392912 hm5C_site_2740 DeepMRMD:0.81226492;iRNA_m5C:0.000463287842392912 2741 chr16 1751952 1751952 1 + C T rs191084488 1751952 + 1751932 1751972 41 ACTCGGGAGGCTGAGTGAGGCAGGAGGATCACTTGAGACCA ACTCGGGAGGCTGAGTGAGGTAGGAGGATCACTTGAGACCA Direct Loss 0.972224961545849 0 0.9189067 0 prediction 0.944449923091699 Functional Loss - JPT2 ENSG00000206053 UTR3 Human protein_coding chr16:1751952 chr16:1751952 . . 0 21 hm5C_associated_SNPs_47421 0 0 1 0 0 unknown 0.50023164425025 0 0.8378134 0.00046328850049937 hm5C_site_2741 DeepMRMD:0.8378134;iRNA_m5C:0.00046328850049937 2742 chr2 85843346 85843346 1 + C G ESCA 85843346 + 85843326 85843366 41 GCCGGTCTAAGCGGGAGTCTCGCGGTTCCACTCGCGGGAAG GCCGGTCTAAGCGGGAGTCTGGCGGTTCCACTCGCGGGAAG Direct Loss 0.972223223553743 0 0.9042136 0 prediction 0.944446447107486 Functional Loss - USP39 ENSG00000168883 CDS Human protein_coding chr2:85843346 chr2:85843346 nonsynonymous SNV 0.932 0 21 hm5C_associated_SNPs_47422 0 0 1 0 0 Cytosol 0.500231643918577 0 0.8084272 0.000463287837153326 hm5C_site_2742 DeepMRMD:0.8084272;iRNA_m5C:0.000463287837153326 2743 chr12 56115585 56115585 1 + C A rs3138142 56115585 + 56115565 56115605 41 GTGAACACAATGGGTCCCATCGGGGTCACCCTTGCCCTGCT GTGAACACAATGGGTCCCATAGGGGTCACCCTTGCCCTGCT Direct Loss 0.972213113812505 0 0.9503387 0 prediction 0.94442622762501 Functional Loss - RDH5 ENSG00000135437 CDS Human protein_coding chr12:56115585 chr12:56115585 synonymous SNV . 0 21 hm5C_associated_SNPs_47423 0 1 0 0 0 Cytosol 0.500231643921104 0 0.9006774 0.000463287842208171 hm5C_site_2743 DeepMRMD:0.9006774;iRNA_m5C:0.000463287842208171 2744 chr11 134336466 134336466 1 + C G rs184868892 134336466 + 134336446 134336486 41 CTCAGCACGGGGCTGCAGGACAGGAGTGAGCGAGGGGCTGC CTCAGCACGGGGCTGCAGGAGAGGAGTGAGCGAGGGGCTGC Direct Loss 0.972204059630127 0 0.6728617 0 prediction 0.944408119260254 Functional Loss - LOC283177 ENSG00000255545 ncRNA_exonic Human processed_transcript chr11:134336466 chr11:134336466 . . 0 21 hm5C_associated_SNPs_47424 0 0 0 0 0 unknown 0.500231643920903 0 0.3457234 0.000463287841805382 hm5C_site_2744 DeepMRMD:0.3457234;iRNA_m5C:0.000463287841805382 2745 chr14 24772341 24772341 1 + C G rs201976440 24772341 + 24772321 24772361 41 TGTATTGGCCCAGGGCCACCCAGGGGTAGTCATTGCCCTGG TGTATTGGCCCAGGGCCACCGAGGGGTAGTCATTGCCCTGG Direct Loss 0.972197083770563 0 0.9539491 0 prediction 0.944394167541126 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24772341 chr14:24772341 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_47425 0 0 1 0 2 Nucleus 0.500231643921092 0 0.9078982 0.000463287842184856 hm5C_site_2745 DeepMRMD:0.9078982;iRNA_m5C:0.000463287842184856 2746 chr19 35512707 35512707 1 + C T rs138099889 35512707 + 35512687 35512727 41 CCCCTGAGCTGGCGGGCTCACGGGGACGGGCCCCAGCACCC CCCCTGAGCTGGCGGGCTCATGGGGACGGGCCCCAGCACCC Direct Loss 0.972194432370862 0 0.9340384 0 prediction 0.944388864741724 Functional Loss - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35512707 chr19:35512707 synonymous SNV . 0 21 hm5C_associated_SNPs_47426 0 0 1 0 1 Endoplasmic reticulum 0.500231643921093 0 0.8680768 0.000463287842185078 hm5C_site_2746 DeepMRMD:0.8680768;iRNA_m5C:0.000463287842185078 2747 chr13 113974779 113974779 1 + C T UCEC 113974779 + 113974759 113974799 41 ACCGTCCTGCTCTTCCAGTTCGGGATGGTGAGGCTGGGGCG ACCGTCCTGCTCTTCCAGTTTGGGATGGTGAGGCTGGGGCG Direct Loss 0.972188346510689 0 0.92905855 0 prediction 0.944376693021377 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113974779 chr13:113974779 synonymous SNV . 0 21 hm5C_associated_SNPs_47427 0 0 1 0 1 Cytosol 0.50023164390106 0 0.8581171 0.000463287802120016 hm5C_site_2747 DeepMRMD:0.8581171;iRNA_m5C:0.000463287802120016 2748 chr19 57050434 57050434 1 + C G rs181108606 57050434 + 57050414 57050454 41 CCGCGAGCCGACGCCGCTCCCGGGTAGAGGCGCCCCCCGCA CCGCGAGCCGACGCCGCTCCGGGGTAGAGGCGCCCCCCGCA Direct Loss 0.972171237465644 0 0.901332 0 prediction 0.944342474931287 Functional Loss - ZFP28 ENSG00000196867 CDS Human protein_coding chr19:57050434 chr19:57050434 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47428 0 0 1 0 0 exosome 0.500231643921092 0 0.802664 0.000463287842184856 hm5C_site_2748 DeepMRMD:0.802664;iRNA_m5C:0.000463287842184856 2749 chr18 580537 580537 1 + C T COAD 580537 + 580517 580557 41 TTTGACCTCTTCGACGTGGACGGAAGTGGGACCATCGACGC TTTGACCTCTTCGACGTGGATGGAAGTGGGACCATCGACGC Direct Loss 0.97216876092637 0 0.83514315 0 prediction 0.94433752185274 Functional Loss - CETN1 ENSG00000177143 CDS Human protein_coding chr18:580537 chr18:580537 synonymous SNV . 0 21 hm5C_associated_SNPs_47429 0 0 0 0 0 unknown 0.500231643920779 0 0.6702863 0.000463287841558913 hm5C_site_2749 DeepMRMD:0.6702863;iRNA_m5C:0.000463287841558913 2750 chr15 78833102 78833102 1 + C T rs116931950 78833102 + 78833082 78833122 41 CAAGCCTGGACGCCGGGGCCCGCGAGGGGGCGGGCTGAGGG CAAGCCTGGACGCCGGGGCCTGCGAGGGGGCGGGCTGAGGG Direct Loss 0.972130312801433 0 0.8535586 0 prediction 0.944260625602866 Functional Loss - PSMA4 ENSG00000041357 UTR5 Human protein_coding chr15:78833102 chr15:78833102 . . 0 21 hm5C_associated_SNPs_47430 0 0 0 0 0 Ribosome 0.500231643706754 0 0.7071172 0.000463287413508873 hm5C_site_2750 DeepMRMD:0.7071172;iRNA_m5C:0.000463287413508873 2751 chr16 2512522 2512522 1 + C T SKCM 2512522 + 2512502 2512542 41 GCGCATGAGGGAGGAGCTCTCGGCAGGTCAGTGGGTCCTGG GCGCATGAGGGAGGAGCTCTTGGCAGGTCAGTGGGTCCTGG Direct Loss 0.972119725099873 0 0.93187034 0 prediction 0.944239450199746 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2512522 chr16:2512522 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_47431 0 0 1 0 1 Ribosome 0.5002316439211 0 0.86374068 0.000463287842199289 hm5C_site_2751 DeepMRMD:0.86374068;iRNA_m5C:0.000463287842199289 2752 chr16 9185931 9185931 1 + C T rs375834133 9185931 + 9185911 9185951 41 CGGAAGGAGGAGGGCGAGGCCGAGATCCAGGAGCACGGGCC CGGAAGGAGGAGGGCGAGGCTGAGATCCAGGAGCACGGGCC Direct Loss 0.972112623520458 0 0.91758424 0 prediction 0.944225247040915 Functional Loss - C16orf72 ENSG00000182831 CDS Human protein_coding chr16:9185931 chr16:9185931 synonymous SNV . 0 21 hm5C_associated_SNPs_47432 0 0 1 0 0 Cytosol 0.500231643756281 0 0.83516848 0.000463287512561417 hm5C_site_2752 DeepMRMD:0.83516848;iRNA_m5C:0.000463287512561417 2753 chr19 37960203 37960203 1 + C T rs561251259 37960203 + 37960183 37960223 41 ACGTTTCCCAGCGGACCCCGCGGGAGTTGGGCCGGCGGCCC ACGTTTCCCAGCGGACCCCGTGGGAGTTGGGCCGGCGGCCC Direct Loss 0.972089986259693 0 0.92470706 0 prediction 0.944179972519386 Functional Loss - ZNF570 ENSG00000171827 UTR5 Human protein_coding chr19:37960203 chr19:37960203 . . 0 21 hm5C_associated_SNPs_47433 0 0 0 0 0 exosome 0.5002313431493 0 0.84941412 0.000462686298600357 hm5C_site_2753 DeepMRMD:0.84941412;iRNA_m5C:0.000462686298600357 2754 chr2 136499449 136499449 1 + C T rs373447948 136499449 + 136499429 136499469 41 ACGGAGGGCGGAGCCGGCTTCGGGACTGCGGAGACTACACA ACGGAGGGCGGAGCCGGCTTTGGGACTGCGGAGACTACACA Direct Loss 0.972075232266577 0 0.9169917 0 prediction 0.944150464533154 Functional Loss - UBXN4 ENSG00000144224 UTR5 Human protein_coding chr2:136499449 chr2:136499449 . . 0 21 hm5C_associated_SNPs_47434 0 0 1 0 0 Endoplasmic reticulum 0.500231643921296 0 0.8339834 0.000463287842591198 hm5C_site_2754 DeepMRMD:0.8339834;iRNA_m5C:0.000463287842591198 Hair color 2755 chr16 2571030 2571030 1 + C T UCEC 2571030 + 2571010 2571050 41 AGCCACGGAGGACGTGGGTTCGGGGGTTGCCCTCGTGGCCC AGCCACGGAGGACGTGGGTTTGGGGGTTGCCCTCGTGGCCC Direct Loss 0.972062928097555 0 0.9386984 0 prediction 0.944125856195111 Functional Loss - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2571030 chr16:2571030 nonsynonymous SNV 0.949 0 21 hm5C_associated_SNPs_47435 0 0 1 0 2 Ribosome 0.500231643962087 0 0.8773968 0.000463287924174161 hm5C_site_2755 DeepMRMD:0.8773968;iRNA_m5C:0.000463287924174161 2756 chr14 52734683 52734683 1 + C T LUAD 52734683 + 52734663 52734703 41 CGGGGCTGGGGTGGTGCTCGCGGCGTCCACTGCGCCCGCTG CGGGGCTGGGGTGGTGCTCGTGGCGTCCACTGCGCCCGCTG Direct Loss 0.97203363176316 0 0.9415587 0 prediction 0.94406726352632 Functional Loss - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52734683 chr14:52734683 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_47436 0 0 0 0 0 exosome 0.500231659494113 0 0.8831174 0.00046331898822638 hm5C_site_2756 DeepMRMD:0.8831174;iRNA_m5C:0.00046331898822638 2757 chr1 120906266 120906266 1 + C T BLCA 120906266 + 120906246 120906286 41 CGACATCTTCGAGCGCATCGCGGGAGAGGCGTCCCGCCTGG CGACATCTTCGAGCGCATCGTGGGAGAGGCGTCCCGCCTGG Direct Loss 0.972027642842054 0 0.9269395 0 prediction 0.944055285684109 Functional Loss - HIST2H2BA ENSG00000223345 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:120906266 chr1:120906266 . . 0 21 hm5C_associated_SNPs_47437 0 0 0 0 0 unknown 0.500230769425923 0 0.853879 0.000461538851845189 hm5C_site_2757 DeepMRMD:0.853879;iRNA_m5C:0.000461538851845189 2758 chr1 152692608 152692608 1 + C T COAD 152692608 + 152692588 152692628 41 ATCTGGCTGCTGTGAGAATTCGGGAAGCTCTGGATGCTGTG ATCTGGCTGCTGTGAGAATTTGGGAAGCTCTGGATGCTGTG Direct Loss 0.972019937353146 0 0.9076562 0 prediction 0.944039874706291 Functional Loss - C1orf68 ENSG00000198854 CDS Human protein_coding chr1:152692608 chr1:152692608 nonsynonymous SNV 0.384 2 21 hm5C_associated_SNPs_47438 0 0 0 0 0 exosome 0.500231643906846 0 0.8153124 0.000463287813691871 hm5C_site_2758 DeepMRMD:0.8153124;iRNA_m5C:0.000463287813691871 2759 chr2 233409177 233409177 1 + C A LUAD 233409177 + 233409157 233409197 41 CCGGCTACAGAATGGCTCCTCGGGATGGTCGATCACAACTG CCGGCTACAGAATGGCTCCTAGGGATGGTCGATCACAACTG Direct Loss 0.972018803218558 0 0.9013694 0 prediction 0.944037606437116 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233409177 chr2:233409177 stopgain 0.005 0 21 hm5C_associated_SNPs_47439 0 0 0 0 0 chromatin 0.500231643925085 0 0.8027388 0.000463287850169136 hm5C_site_2759 DeepMRMD:0.8027388;iRNA_m5C:0.000463287850169136 2760 chr22 29694821 29694821 1 + C T UCEC 29694821 + 29694801 29694841 41 CAAGAGGACCCCGGGGTTCCCGAGGGAACCCCTCTGGAGGA CAAGAGGACCCCGGGGTTCCTGAGGGAACCCCTCTGGAGGA Direct Loss 0.972015755560479 0 0.93270147 0 prediction 0.944031511120959 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29694821 chr22:29694821 stopgain 0.947 0 21 hm5C_associated_SNPs_47440 0 0 1 0 2 Cytosol 0.500231643921092 0 0.86540294 0.000463287842184856 hm5C_site_2760 DeepMRMD:0.86540294;iRNA_m5C:0.000463287842184856 2761 chr4 9784920 9784920 1 + C T COAD 9784920 + 9784900 9784940 41 ACGCCGTTACCCCCGGCAACCGGGAGGTGGACAACGACGAG ACGCCGTTACCCCCGGCAACTGGGAGGTGGACAACGACGAG Direct Loss 0.972003218078352 0 0.9239298 0 prediction 0.944006436156704 Functional Loss - DRD5 ENSG00000169676 CDS Human protein_coding chr4:9784920 chr4:9784920 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47441 0 0 0 0 0 unknown 0.500231643921092 0 0.8478596 0.000463287842183968 hm5C_site_2761 DeepMRMD:0.8478596;iRNA_m5C:0.000463287842183968 2762 chr17 59560453 59560453 1 + C G rs140662248 59560453 + 59560433 59560473 41 GCCCGAGATTGCCGGGGTGTCTGGGGTGGACGACCTGCCCC GCCCGAGATTGCCGGGGTGTGTGGGGTGGACGACCTGCCCC Direct Loss 0.9719649943585 0 0.9326982 0 prediction 0.943929988716999 Functional Loss - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59560453 chr17:59560453 nonsynonymous SNV 0.909 2 21 hm5C_associated_SNPs_47442 1 0 0 0 0 exosome 0.500231643814584 0 0.8653964 0.000463287629168141 hm5C_site_2762 DeepMRMD:0.8653964;iRNA_m5C:0.000463287629168141 Ischiopatellar dysplasia Ischiopatellar dysplasia 2763 chr9 140510167 140510167 1 + G C HNSC 140510167 - 140510147 140510187 41 CCACGCGCCAGCGGGTTTCTCAGCAGGGGAGGTCCACACCA CCACGCGCCAGCGGGTTTCTGAGCAGGGGAGGTCCACACCA Direct Loss 0.971955114623458 0 0.8981758 0 prediction 0.943910229246917 Functional Loss - ARRDC1-AS1 ENSG00000203993 CDS Human antisense chr9:140510167 chr9:140510167 stopgain . 0 21 hm5C_associated_SNPs_47443 0 0 1 0 0 unknown 0.500231643923949 0 0.7963516 0.00046328784789762 hm5C_site_2763 DeepMRMD:0.7963516;iRNA_m5C:0.00046328784789762 2764 chr6 26463515 26463515 1 + C T rs145913124 26463515 + 26463495 26463535 41 TCAATGAGGGGCCATGAAGACGGGGGCATCCGGCTGGAGTG TCAATGAGGGGCCATGAAGATGGGGGCATCCGGCTGGAGTG Direct Loss 0.971915132267697 0 0.9076489 0 prediction 0.943830264535395 Functional Loss - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26463515 chr6:26463515 synonymous SNV . 0 21 hm5C_associated_SNPs_47444 0 0 1 0 1 Endoplasmic reticulum 0.500231643925265 0 0.8152978 0.000463287850529071 hm5C_site_2764 DeepMRMD:0.8152978;iRNA_m5C:0.000463287850529071 2765 chr19 6746083 6746083 1 + C T rs552901206 6746083 + 6746063 6746103 41 CCTGGGGGGCCCCGTACCCTCGGCATTGCCTAACGGACCCC CCTGGGGGGCCCCGTACCCTTGGCATTGCCTAACGGACCCC Direct Loss 0.971909756092228 0 0.5099475 0 prediction 0.943819512184457 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6746083 chr19:6746083 nonsynonymous SNV 0.209 2 21 hm5C_associated_SNPs_47445 0 0 1 0 1 Ribosome 0.500231643921092 0 0.019895 0.000463287842184856 hm5C_site_2765 DeepMRMD:0.019895;iRNA_m5C:0.000463287842184856 2766 chrX 54841892 54841892 1 + C T GBM 54841892 + 54841872 54841912 41 GGCCAAAGCCCGGATCCAGGCGGGAGCAGAAGCTAAAGCCA GGCCAAAGCCCGGATCCAGGTGGGAGCAGAAGCTAAAGCCA Direct Loss 0.971890400681356 0 0.9017875 0 prediction 0.943780801362712 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54841892 chrX:54841892 nonsynonymous SNV 0.983 0 21 hm5C_associated_SNPs_47446 0 0 1 0 0 chromatin 0.500231643921092 0 0.803575 0.000463287842184856 hm5C_site_2766 DeepMRMD:0.803575;iRNA_m5C:0.000463287842184856 2767 chrX 136649760 136649760 1 + C T COAD 136649760 + 136649740 136649780 41 GCTACTGGGAGGAGTGCCCCCGGGAGGGCAAGTCTTTCAAG GCTACTGGGAGGAGTGCCCCTGGGAGGGCAAGTCTTTCAAG Direct Loss 0.97188377847946 0 0.9052286 0 prediction 0.94376755695892 Functional Loss - ZIC3 ENSG00000156925 CDS Human protein_coding chrX:136649760 chrX:136649760 nonsynonymous SNV 0.993 5 21 hm5C_associated_SNPs_47447 0 0 1 0 0 exosome 0.500231643921096 0 0.8104572 0.00046328784219285 hm5C_site_2767 DeepMRMD:0.8104572;iRNA_m5C:0.00046328784219285 2768 chr1 152785131 152785131 1 + C A UCEC 152785131 + 152785111 152785151 41 CTCTGGGGGTTGCTGCAGTTCTGGGGGAGGTGGCTGCTGCC CTCTGGGGGTTGCTGCAGTTATGGGGGAGGTGGCTGCTGCC Direct Loss 0.97188255010598 0 0.8894056 0 prediction 0.94376510021196 Functional Loss - LCE1B ENSG00000196734 CDS Human protein_coding chr1:152785131 chr1:152785131 nonsynonymous SNV 0.962 2 21 hm5C_associated_SNPs_47448 0 0 0 0 0 unknown 0.500231643921092 0 0.7788112 0.000463287842184856 hm5C_site_2768 DeepMRMD:0.7788112;iRNA_m5C:0.000463287842184856 2769 chr18 56887580 56887580 1 + C T UCEC 56887580 + 56887560 56887600 41 GCGAGCGGTCCCGCTGCCTGCGGGCGGAGGGACCGTGCTGA GCGAGCGGTCCCGCTGCCTGTGGGCGGAGGGACCGTGCTGA Direct Loss 0.971851892887489 0 0.9016596 0 prediction 0.943703785774978 Functional Loss - GRP ENSG00000134443 CDS Human protein_coding chr18:56887580 chr18:56887580 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_47449 0 0 0 0 1 unknown 0.500231643920769 0 0.8033192 0.000463287841537152 hm5C_site_2769 DeepMRMD:0.8033192;iRNA_m5C:0.000463287841537152 2770 chr12 58335497 58335497 1 + C A BLCA 58335497 + 58335477 58335517 41 CGGGAGGCATGGCGGGAGCTCCGGACGAGCGCCGGCGGGGC CGGGAGGCATGGCGGGAGCTACGGACGAGCGCCGGCGGGGC Direct Loss 0.971850936546902 0 0.90468466 0 prediction 0.943701873093803 Functional Loss - ATP23 ENSG00000166896 CDS Human protein_coding chr12:58335497 chr12:58335497 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_47450 0 0 1 0 0 Cytosol 0.500231645785155 0 0.80936932 0.000463291570309776 hm5C_site_2770 DeepMRMD:0.80936932;iRNA_m5C:0.000463291570309776 2771 chrX 118109165 118109165 1 + C T BLCA 118109165 + 118109145 118109185 41 CACCGTGGCGGCGGAAGAGACGGGGGCCGCCGCGGCTGCGG CACCGTGGCGGCGGAAGAGATGGGGGCCGCCGCGGCTGCGG Direct Loss 0.971848730577872 0 0.9190891 0 prediction 0.943697461155743 Functional Loss - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109165 chrX:118109165 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_47451 0 0 0 0 0 chromatin 0.500231643953382 0 0.8381782 0.000463287906764975 hm5C_site_2771 DeepMRMD:0.8381782;iRNA_m5C:0.000463287906764975 2772 chr1 231298872 231298872 1 + C T UCEC 231298872 + 231298852 231298892 41 CCCAGCCGCTCCTGCTTTCCCGGGGATCGGGGCTGCAGGCG CCCAGCCGCTCCTGCTTTCCTGGGGATCGGGGCTGCAGGCG Direct Loss 0.971843481148813 0 0.9301955 0 prediction 0.943686962297627 Functional Loss - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231298872 chr1:231298872 nonsynonymous SNV 0.416 2 21 hm5C_associated_SNPs_47452 0 0 0 0 0 exosome 0.50023164392217 0 0.860391 0.000463287844340465 hm5C_site_2772 DeepMRMD:0.860391;iRNA_m5C:0.000463287844340465 2773 chr11 94277900 94277900 1 + C G rs553674609 94277900 + 94277880 94277920 41 GGTGGGAGCCCTTCGGGGGGCGCGATAGCGCCCCGAGGCCG GGTGGGAGCCCTTCGGGGGGGGCGATAGCGCCCCGAGGCCG Direct Loss 0.971828137267004 0 0.853173 0 prediction 0.943656274534009 Functional Loss - FUT4 ENSG00000196371 CDS Human protein_coding chr11:94277900 chr11:94277900 nonsynonymous SNV 0.082 1 21 hm5C_associated_SNPs_47453 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.706346 0.000463287842184856 hm5C_site_2773 DeepMRMD:0.706346;iRNA_m5C:0.000463287842184856 2774 chr19 51359599 51359599 1 + C T COAD 51359599 + 51359579 51359619 41 TCTCGTGGCAGGGCAGTCTGCGGCGGTGTTCTGGTGCACCC TCTCGTGGCAGGGCAGTCTGTGGCGGTGTTCTGGTGCACCC Direct Loss 0.971813725698901 0 0.89988166 0 prediction 0.943627451397802 Functional Loss - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51359599 chr19:51359599 synonymous SNV . 0 21 hm5C_associated_SNPs_47454 0 0 0 0 1 Cytosol 0.500231610307055 0 0.79976332 0.000463220614109527 hm5C_site_2774 DeepMRMD:0.79976332;iRNA_m5C:0.000463220614109527 2775 chr12 132636059 132636059 1 + C T rs368698447 132636059 + 132636039 132636079 41 GCCTACCTGGTGGCCGCCTTCGCCAAGCGGCTGGCCCGCCT GCCTACCTGGTGGCCGCCTTTGCCAAGCGGCTGGCCCGCCT Direct Loss 0.97179293756036 0 0.943596 0 prediction 0.94358587512072 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636059 chr12:132636059 synonymous SNV . 0 21 hm5C_associated_SNPs_47455 0 0 1 0 1 Ribosome 0.500231643921093 0 0.887192 0.000463287842185078 hm5C_site_2775 DeepMRMD:0.887192;iRNA_m5C:0.000463287842185078 2776 chr20 62505086 62505086 1 + C G BLCA 62505086 + 62505066 62505106 41 GAGAGGCACTGTGGAGAGCTCAAGAGGAGGCTGGGCCTCTC GAGAGGCACTGTGGAGAGCTGAAGAGGAGGCTGGGCCTCTC Direct Loss 0.97177459466637 0 0.9263997 0 prediction 0.943549189332739 Functional Loss - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62505086 chr20:62505086 synonymous SNV . 0 21 hm5C_associated_SNPs_47456 0 0 1 0 2 Ribosome 0.500231644078866 0 0.8527994 0.000463288157732 hm5C_site_2776 DeepMRMD:0.8527994;iRNA_m5C:0.000463288157732 2777 chr3 44906642 44906642 1 + C T SKCM 44906642 + 44906622 44906662 41 CACAGGAAGCTCCCACCCACCTGGAAGCCCCTTCCACACAA CACAGGAAGCTCCCACCCACTTGGAAGCCCCTTCCACACAA Direct Loss 0.971774476864642 0 0.18539363 0 prediction 0.943548953729284 Functional Loss - TMEM42 ENSG00000169964 CDS Human protein_coding chr3:44906642 chr3:44906642 synonymous SNV . 0 21 hm5C_associated_SNPs_47457 0 0 1 0 0 exosome 0.500231641262236 0 0 0.000463282524471698 hm5C_site_2777 DeepMRMD:0;iRNA_m5C:0.000463282524471698 2778 chr11 64889873 64889873 1 + C T KICH 64889873 + 64889853 64889893 41 GATGGAGAACCGGTGTCCAGCGGGGCTGCGGGCTACGGCTG GATGGAGAACCGGTGTCCAGTGGGGCTGCGGGCTACGGCTG Direct Loss 0.971757374910272 0 0.9188273 0 prediction 0.943514749820545 Functional Loss - MRPL49 ENSG00000149792 CDS Human protein_coding chr11:64889873 chr11:64889873 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47458 0 0 1 0 1 Ribosome 0.500231643921172 0 0.8376546 0.000463287842343618 hm5C_site_2778 DeepMRMD:0.8376546;iRNA_m5C:0.000463287842343618 2779 chr6 107349446 107349446 1 + C G rs562503506 107349446 + 107349426 107349466 41 GCCTGCAGTCCGCGCGGCCGCGGGGAGGGACGAGAGGGCCT GCCTGCAGTCCGCGCGGCCGGGGGGAGGGACGAGAGGGCCT Direct Loss 0.97172164227888 0 0.88493574 0 prediction 0.94344328455776 Functional Loss - C6orf203 ENSG00000130349 UTR5 Human protein_coding chr6:107349446 chr6:107349446 . . 0 21 hm5C_associated_SNPs_47459 0 0 1 0 1 Cytosol 0.500231628317468 0 0.76987148 0.000463256634935627 hm5C_site_2779 DeepMRMD:0.76987148;iRNA_m5C:0.000463256634935627 2780 chr1 906350 906350 1 + C T SKCM 906350 + 906330 906370 41 GAGAAGCAGACGGCCCTCCTCGGGGGGCCGCGGCGCTGCCA GAGAAGCAGACGGCCCTCCTTGGGGGGCCGCGGCGCTGCCA Direct Loss 0.971720634679971 0 0.9598491 0 prediction 0.943441269359942 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906350 chr1:906350 synonymous SNV . 0 21 hm5C_associated_SNPs_47460 0 0 0 0 2 chromatin 0.500231643920963 0 0.9196982 0.000463287841925508 hm5C_site_2780 DeepMRMD:0.9196982;iRNA_m5C:0.000463287841925508 2781 chr9 93639979 93639979 1 + C T LUSC 93639979 + 93639959 93639999 41 CCGTACATCGTGCGGATGATCGGGATATGCGAGGCCGAGTC CCGTACATCGTGCGGATGATTGGGATATGCGAGGCCGAGTC Direct Loss 0.971705542490711 0 0.93012595 0 prediction 0.943411084981422 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93639979 chr9:93639979 synonymous SNV . 0 21 hm5C_associated_SNPs_47461 0 0 0 0 1 Cytosol 0.500231641767866 0 0.8602519 0.000463283535731218 hm5C_site_2781 DeepMRMD:0.8602519;iRNA_m5C:0.000463283535731218 2782 chr3 147128338 147128338 1 + C A LUSC 147128338 + 147128318 147128358 41 ACCTCCTCTTCCCCGGGCTTCACGAGCAGGCTGCCGGCCAC ACCTCCTCTTCCCCGGGCTTAACGAGCAGGCTGCCGGCCAC Direct Loss 0.971705308374205 0 0.45715323 0 prediction 0.943410616748409 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147128338 chr3:147128338 nonsynonymous SNV 0.993 3 21 hm5C_associated_SNPs_47462 0 0 0 0 0 exosome 0.500231643921961 0 0 0.000463287843922133 hm5C_site_2782 DeepMRMD:0;iRNA_m5C:0.000463287843922133 2783 chr12 56514379 56514379 1 + C T UCEC 56514379 + 56514359 56514399 41 GACAGCTATGCCAACGGTACCGGGAGCAGCGGTGGAGGCCC GACAGCTATGCCAACGGTACTGGGAGCAGCGGTGGAGGCCC Direct Loss 0.971684390886985 0 0.9140585 0 prediction 0.94336878177397 Functional Loss - ZC3H10 ENSG00000135482 CDS Human protein_coding chr12:56514379 chr12:56514379 synonymous SNV . 0 21 hm5C_associated_SNPs_47463 0 0 0 0 1 Ribosome 0.500231643921084 0 0.828117 0.000463287842168203 hm5C_site_2783 DeepMRMD:0.828117;iRNA_m5C:0.000463287842168203 2784 chr13 76447803 76447803 1 + C T CESC 76447803 + 76447783 76447823 41 GGATAAAAAGACCGCAGTTTCGGGAATGATGATTTCGCTGG GGATAAAAAGACCGCAGTTTTGGGAATGATGATTTCGCTGG Direct Loss 0.971665297772754 0 0.9054364 0 prediction 0.943330595545508 Functional Loss - LMO7DN ENSG00000178734 CDS Human protein_coding chr13:76447803 chr13:76447803 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47464 0 0 0 0 2 exosome 0.500231642531402 0 0.8108728 0.000463285062803465 hm5C_site_2784 DeepMRMD:0.8108728;iRNA_m5C:0.000463285062803465 2785 chr17 73106432 73106432 1 + C T rs74697881 73106432 + 73106412 73106452 41 ACGTCGGGCGGCTGGGATACCTGCAGGCGCTGGTCACGGAA ACGTCGGGCGGCTGGGATACTTGCAGGCGCTGGTCACGGAA Direct Loss 0.971662523429305 0 0.83928806 0 prediction 0.94332504685861 Functional Loss - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73106432 chr17:73106432 synonymous SNV . 0 21 hm5C_associated_SNPs_47465 0 0 1 0 1 Cytosol 0.50024065724048 0 0.67857612 0.000481314480960116 hm5C_site_2785 DeepMRMD:0.67857612;iRNA_m5C:0.000481314480960116 2786 chr17 41477292 41477292 1 + C T BLCA 41477292 + 41477272 41477312 41 GAGAAGATCCGGGTGCCCCTCGGGGGATCGCGTGGCATCAC GAGAAGATCCGGGTGCCCCTTGGGGGATCGCGTGGCATCAC Direct Loss 0.971654972917713 0 0.9429087 0 prediction 0.943309945835425 Functional Loss - ARL4D ENSG00000175906 CDS Human protein_coding chr17:41477292 chr17:41477292 synonymous SNV . 0 21 hm5C_associated_SNPs_47466 0 0 0 0 0 Cytosol 0.500231660139789 0 0.8858174 0.000463320279578516 hm5C_site_2786 DeepMRMD:0.8858174;iRNA_m5C:0.000463320279578516 2787 chr12 57167691 57167691 1 + C G rs146006697 57167691 + 57167671 57167711 41 ACTACCTTCTGCACTGGTACCGGGAGAGGCAGGTGGTGAGC ACTACCTTCTGCACTGGTACGGGGAGAGGCAGGTGGTGAGC Direct Loss 0.971645267759547 0 0.94020915 0 prediction 0.943290535519095 Functional Loss - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57167691 chr12:57167691 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_47467 0 0 0 0 1 Endoplasmic reticulum 0.500231643921096 0 0.8804183 0.000463287842192184 hm5C_site_2787 DeepMRMD:0.8804183;iRNA_m5C:0.000463287842192184 2788 chr14 29236587 29236587 1 + C T COAD 29236587 + 29236567 29236607 41 GTCCAGAACGACAACCACCACGCGAGCCACGGCCACCACAA GTCCAGAACGACAACCACCATGCGAGCCACGGCCACCACAA Direct Loss 0.971640663378562 0 0.41620964 0 prediction 0.943281326757124 Functional Loss - FOXG1 ENSG00000176165 CDS Human protein_coding chr14:29236587 chr14:29236587 synonymous SNV . 0 21 hm5C_associated_SNPs_47468 0 0 0 0 0 Cytosol 0.500231643921092 0 0 0.000463287842184856 hm5C_site_2788 DeepMRMD:0;iRNA_m5C:0.000463287842184856 2789 chr19 34919421 34919421 1 + C T BLCA 34919421 + 34919401 34919441 41 GTGGTGGGGGCGGGCGGCATCGGCTGCGAGCTCCTCAAGAA GTGGTGGGGGCGGGCGGCATTGGCTGCGAGCTCCTCAAGAA Direct Loss 0.971629158014334 0 0.8523549 0 prediction 0.943258316028668 Functional Loss - UBA2 ENSG00000126261 CDS Human protein_coding chr19:34919421 chr19:34919421 synonymous SNV . 0 21 hm5C_associated_SNPs_47469 0 0 1 0 1 Cytosol 0.500231643921081 0 0.7047098 0.00046328784216132 hm5C_site_2789 DeepMRMD:0.7047098;iRNA_m5C:0.00046328784216132 2790 chr12 1748923 1748923 1 + C T STAD 1748923 + 1748903 1748943 41 GCCATCAGCCGGGCCTGCCGCGAGGGCGAGCTCTCCACCTG GCCATCAGCCGGGCCTGCCGTGAGGGCGAGCTCTCCACCTG Direct Loss 0.971629046442403 0 0.9124005 0 prediction 0.943258092884805 Functional Loss - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1748923 chr12:1748923 synonymous SNV . 0 21 hm5C_associated_SNPs_47470 0 0 0 0 1 Endoplasmic reticulum 0.500231643921168 0 0.824801 0.000463287842335847 hm5C_site_2790 DeepMRMD:0.824801;iRNA_m5C:0.000463287842335847 2791 chr11 71249121 71249121 1 + C G LIHC 71249121 + 71249101 71249141 41 CATGGGCTGCTGTGGCTGCTCTGGAGGCTGTGGCTCCGGCT CATGGGCTGCTGTGGCTGCTGTGGAGGCTGTGGCTCCGGCT Direct Loss 0.971613556334204 0 0.78438824 0 prediction 0.943227112668407 Functional Loss - KRTAP5-8 ENSG00000241233 CDS Human protein_coding chr11:71249121 chr11:71249121 nonsynonymous SNV 0.850 1 21 hm5C_associated_SNPs_47471 0 0 0 0 0 unknown 0.500231643921092 0 0.56877648 0.000463287842184856 hm5C_site_2791 DeepMRMD:0.56877648;iRNA_m5C:0.000463287842184856 2792 chr16 85689974 85689974 1 + C T LUSC 85689974 + 85689954 85689994 41 AGATGGACGAGGAGCTAAGGCGGGAGAGGGAGCGCGAGCGC AGATGGACGAGGAGCTAAGGTGGGAGAGGGAGCGCGAGCGC Direct Loss 0.97160649902597 0 0.8879895 0 prediction 0.94321299805194 Functional Loss - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85689974 chr16:85689974 nonsynonymous SNV 0.351 4 21 hm5C_associated_SNPs_47472 0 0 1 0 1 Cytosol 0.500231643921092 0 0.775979 0.000463287842184856 hm5C_site_2792 DeepMRMD:0.775979;iRNA_m5C:0.000463287842184856 2793 chr19 50979855 50979855 1 + G C rs371934738 50979855 - 50979835 50979875 41 GCTCGACTGGGCGCTGCTACCGCCATCAGCAAGAGCAGGAG GCTCGACTGGGCGCTGCTACGGCCATCAGCAAGAGCAGGAG Direct Loss 0.971590318039874 0 0.8609755 0 prediction 0.943180636079747 Functional Loss - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50979855 chr19:50979855 synonymous SNV . 0 21 hm5C_associated_SNPs_47473 0 0 0 0 0 Cytosol 0.500231596379105 0 0.721951 0.000463192758209274 hm5C_site_2793 DeepMRMD:0.721951;iRNA_m5C:0.000463192758209274 2794 chr20 52835653 52835653 1 + C T SKCM 52835653 + 52835633 52835673 41 GTTCAGTTGTATGCAAAATTCGGGAGCAACATAAACCTTGA GTTCAGTTGTATGCAAAATTTGGGAGCAACATAAACCTTGA Direct Loss 0.971578962340727 0 0.90103066 0 prediction 0.943157924681454 Functional Loss - PFDN4 ENSG00000101132 CDS Human protein_coding chr20:52835653 chr20:52835653 synonymous SNV . 0 21 hm5C_associated_SNPs_47474 0 0 1 0 1 Ribosome 0.500231598651669 0 0.80206132 0.000463197303337992 hm5C_site_2794 DeepMRMD:0.80206132;iRNA_m5C:0.000463197303337992 2795 chr11 125617637 125617637 1 + C T GBM 125617637 + 125617617 125617657 41 GATGTGCCACCTCCAGTTCCCAGGAGAAAAGTGCTCCAGAG GATGTGCCACCTCCAGTTCCTAGGAGAAAAGTGCTCCAGAG Direct Loss 0.971553309008659 0 0.9222683 0 prediction 0.943106618017318 Functional Loss - PATE1 ENSG00000171053 CDS Human protein_coding chr11:125617637 chr11:125617637 nonsynonymous SNV 0.770 3 21 hm5C_associated_SNPs_47475 0 0 0 0 2 unknown 0.500231643921092 0 0.8445366 0.000463287842184856 hm5C_site_2795 DeepMRMD:0.8445366;iRNA_m5C:0.000463287842184856 2796 chr1 248569959 248569959 1 + C T rs140441913 248569959 + 248569939 248569979 41 GCTTTCCCTTCTGCAATTCCCGGGAGATTAACCACTTCTTC GCTTTCCCTTCTGCAATTCCTGGGAGATTAACCACTTCTTC Direct Loss 0.971543790919067 0 0.93550956 0 prediction 0.943087581838135 Functional Loss - OR2T1 ENSG00000175143 CDS Human protein_coding chr1:248569959 chr1:248569959 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_47476 0 0 0 0 0 unknown 0.500231643921092 0 0.87101912 0.000463287842184856 hm5C_site_2796 DeepMRMD:0.87101912;iRNA_m5C:0.000463287842184856 2797 chr9 91150578 91150578 1 + C T BLCA 91150578 + 91150558 91150598 41 TGTCAGCCGACGGCAGCTCCCAGGAGATGCTGGACTTCATG TGTCAGCCGACGGCAGCTCCTAGGAGATGCTGGACTTCATG Direct Loss 0.971532629536851 0 0.90092385 0 prediction 0.943065259073702 Functional Loss - NXNL2 ENSG00000130045 CDS Human protein_coding chr9:91150578 chr9:91150578 stopgain 0.700 0 21 hm5C_associated_SNPs_47477 0 0 0 0 1 Nucleus 0.500231643916904 0 0.8018477 0.000463287833807335 hm5C_site_2797 DeepMRMD:0.8018477;iRNA_m5C:0.000463287833807335 2798 chr4 24801354 24801354 1 + C T rs8192291 24801354 + 24801334 24801374 41 AGGTGCAGCCGTCGGCCACGCTGGACGCCGCGCAGCCCCGG AGGTGCAGCCGTCGGCCACGTTGGACGCCGCGCAGCCCCGG Direct Loss 0.9715053868721 0 0.81554407 0 prediction 0.943010773744201 Functional Loss - SOD3 ENSG00000109610 CDS Human protein_coding chr4:24801354 chr4:24801354 synonymous SNV . 0 21 hm5C_associated_SNPs_47478 0 0 0 0 0 Endoplasmic reticulum 0.500231643920986 0 0.63108814 0.000463287841971249 hm5C_site_2798 DeepMRMD:0.63108814;iRNA_m5C:0.000463287841971249 2799 chr1 6694732 6694732 1 + C T CHOL 6694732 + 6694712 6694752 41 GGTCCTAGCTCCGCTGCATTCTGCATCCCAAGTGGGCACGT GGTCCTAGCTCCGCTGCATTTTGCATCCCAAGTGGGCACGT Direct Loss 0.971500080771829 0 0.42766118 0 prediction 0.943000161543658 Functional Loss - DNAJC11;THAP3 ENSG00000007923 CDS Human protein_coding chr1:6694732 chr1:6694732 nonsynonymous SNV 0.152 1 21 hm5C_associated_SNPs_47479 0 0 0 0 0 unknown 0.500231643921089 0 0 0.000463287842178861 hm5C_site_2799 DeepMRMD:0;iRNA_m5C:0.000463287842178861 2800 chr1 203452396 203452396 1 + C T COAD 203452396 + 203452376 203452416 41 CCAACAAGACGACCAAGACCCGGGACTGGGCCCGGGCGCAG CCAACAAGACGACCAAGACCTGGGACTGGGCCCGGGCGCAG Direct Loss 0.971436089517157 0 0.877247 0 prediction 0.942872179034313 Functional Loss - PRELP ENSG00000188783 CDS Human protein_coding chr1:203452396 chr1:203452396 synonymous SNV . 0 21 hm5C_associated_SNPs_47480 0 0 0 0 1 exosome 0.500231643922155 0 0.754494 0.000463287844309379 hm5C_site_2800 DeepMRMD:0.754494;iRNA_m5C:0.000463287844309379 2801 chr1 6694826 6694826 1 + C T rs149431964 6694826 + 6694806 6694846 41 GGACGCTGGACCTGCAGGAGCGGGGAGCTGCAGTGCCACCT GGACGCTGGACCTGCAGGAGTGGGGAGCTGCAGTGCCACCT Direct Loss 0.971379323657827 0 0.9127252 0 prediction 0.942758647315654 Functional Loss - DNAJC11;THAP3 ENSG00000007923 CDS Human protein_coding chr1:6694826 chr1:6694826 synonymous SNV . 0 21 hm5C_associated_SNPs_47481 0 0 0 0 0 unknown 0.500231643979866 0 0.8254504 0.000463287959731273 hm5C_site_2801 DeepMRMD:0.8254504;iRNA_m5C:0.000463287959731273 2802 chr12 13154146 13154146 1 + C A rs188660901 13154146 + 13154126 13154166 41 CCGAGCCCCGCCGGAGCGCCCGAGAGCCCGCGCGTCCCGGG CCGAGCCCCGCCGGAGCGCCAGAGAGCCCGCGCGTCCCGGG Direct Loss 0.971338818327864 0 0.92055786 0 prediction 0.942677636655727 Functional Loss - HTR7P1 ENSG00000183935 ncRNA_exonic Human transcribed_processed_pseudogene chr12:13154146 chr12:13154146 . . 0 21 hm5C_associated_SNPs_47482 0 0 0 0 0 unknown 0.500231643978127 0 0.84111572 0.000463287956254499 hm5C_site_2802 DeepMRMD:0.84111572;iRNA_m5C:0.000463287956254499 2803 chr12 6948245 6948245 1 + C T BLCA 6948245 + 6948225 6948265 41 ATGGGGTGTGGGCCGTGACTCGGGGACGGCGCTGTGCCCTG ATGGGGTGTGGGCCGTGACTTGGGGACGGCGCTGTGCCCTG Direct Loss 0.971328236200804 0 0.9446006 0 prediction 0.942656472401607 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6948245 chr12:6948245 nonsynonymous SNV 0.959 2 21 hm5C_associated_SNPs_47483 0 0 1 0 2 membrane 0.500226753742958 0 0.8892012 0.000453507485916882 hm5C_site_2803 DeepMRMD:0.8892012;iRNA_m5C:0.000453507485916882 2804 chr14 24607728 24607728 1 + C A LUSC 24607728 + 24607708 24607748 41 AGCTGGATGAGGCAGAGTACCGGGACATCCGGCTGATGGTC AGCTGGATGAGGCAGAGTACAGGGACATCCGGCTGATGGTC Direct Loss 0.971302025514078 0 0.9030776 0 prediction 0.942604051028157 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607728 chr14:24607728 synonymous SNV . 0 21 hm5C_associated_SNPs_47484 0 0 1 0 1 Ribosome 0.50023164392026 0 0.8061552 0.000463287840520854 hm5C_site_2804 DeepMRMD:0.8061552;iRNA_m5C:0.000463287840520854 2805 chr11 134123521 134123521 1 + C T LUSC 134123521 + 134123501 134123541 41 TGGAGCGGCTGCCGGCGTTTCGGGGCGCGCCTCGGCTGCCT TGGAGCGGCTGCCGGCGTTTTGGGGCGCGCCTCGGCTGCCT Direct Loss 0.971289456933385 0 0.95048 0 prediction 0.942578913866771 Functional Loss - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134123521 chr11:134123521 synonymous SNV . 0 21 hm5C_associated_SNPs_47485 0 0 1 0 1 Cytosol 0.500231643921163 0 0.90096 0.000463287842326743 hm5C_site_2805 DeepMRMD:0.90096;iRNA_m5C:0.000463287842326743 2806 chr10 115804636 115804636 1 + C T HNSC 115804636 + 115804616 115804656 41 TCGTGTACCTGCGGGTGTTCCGCGAGGCCCAGAAGCAGGTG TCGTGTACCTGCGGGTGTTCTGCGAGGCCCAGAAGCAGGTG Direct Loss 0.971285397213022 0 0.90905 0 prediction 0.942570794426044 Functional Loss - ADRB1 ENSG00000043591 CDS Human protein_coding chr10:115804636 chr10:115804636 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_47486 0 0 0 0 0 Nucleus 0.500231643996234 0 0.8181 0.000463287992467531 hm5C_site_2806 DeepMRMD:0.8181;iRNA_m5C:0.000463287992467531 2807 chr21 46387037 46387037 1 + C T BLCA 46387037 + 46387017 46387057 41 GTGGGGGACCTGCACCCTCTCAGGGATGCCCTGCCCGAGCT GTGGGGGACCTGCACCCTCTTAGGGATGCCCTGCCCGAGCT Direct Loss 0.97127178865199 0 0.94482815 0 prediction 0.942543577303979 Functional Loss - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46387037 chr21:46387037 synonymous SNV . 0 21 hm5C_associated_SNPs_47487 0 0 1 0 2 Ribosome 0.500231643921092 0 0.8896563 0.000463287842184856 hm5C_site_2807 DeepMRMD:0.8896563;iRNA_m5C:0.000463287842184856 2808 chr3 37061906 37061906 1 + C T LUSC 37061906 + 37061886 37061926 41 GAGCGGGTGCAGCAGCACATCGAGAGCAAGCTCCTGGGCTC GAGCGGGTGCAGCAGCACATTGAGAGCAAGCTCCTGGGCTC Direct Loss 0.971255204557059 0 0.89611363 0 prediction 0.942510409114119 Functional Loss - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37061906 chr3:37061906 synonymous SNV . 0 21 hm5C_associated_SNPs_47488 0 0 0 0 1 Cytosol 0.500231644478415 0 0.79222726 0.000463288956830565 hm5C_site_2808 DeepMRMD:0.79222726;iRNA_m5C:0.000463288956830565 2809 chr15 29034372 29034372 1 + C T rs529983589 29034372 + 29034352 29034392 41 GCGCCCGGGTCGCGGCCCACCTGGACGCACTGGGCCCCCTG GCGCCCGGGTCGCGGCCCACTTGGACGCACTGGGCCCCCTG Direct Loss 0.971246539731426 0 0.3656202 0 prediction 0.942493079462853 Functional Loss - LOC100289656 ENSG00000232431;ENSG00000256951 ncRNA_exonic Human other chr15:29034372 chr15:29034372 . . 0 21 hm5C_associated_SNPs_47489 0 0 0 0 0 unknown 0.500231643778741 0 0 0.000463287557481928 hm5C_site_2809 DeepMRMD:0;iRNA_m5C:0.000463287557481928 2810 chr19 30935727 30935727 1 + C A COAD 30935727 + 30935707 30935747 41 TGCCCATGGGCGGCATGTCCCAGGAGGCCCACGCCAACCTG TGCCCATGGGCGGCATGTCCAAGGAGGCCCACGCCAACCTG Direct Loss 0.971223999696763 0 0.93387604 0 prediction 0.942447999393526 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935727 chr19:30935727 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_47490 0 0 0 0 0 exosome 0.500231643921094 0 0.86775208 0.000463287842188187 hm5C_site_2810 DeepMRMD:0.86775208;iRNA_m5C:0.000463287842188187 2811 chr3 14861903 14861903 1 + C A LUAD 14861903 + 14861883 14861923 41 CCTGCCCGGTCAGGCGGCCCCTGGAGAAGGAGGGCAGGCTG CCTGCCCGGTCAGGCGGCCCATGGAGAAGGAGGGCAGGCTG Direct Loss 0.971160118844704 0 0.90264916 0 prediction 0.942320237689409 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14861903 chr3:14861903 nonsynonymous SNV 0.158 0 21 hm5C_associated_SNPs_47491 0 0 0 0 0 Cytosol 0.500231642016298 0 0.80529832 0.000463284032596434 hm5C_site_2811 DeepMRMD:0.80529832;iRNA_m5C:0.000463284032596434 2812 chr12 90103606 90103606 1 + C G ESCA 90103606 + 90103586 90103626 41 GCGCGGGGCCGGGCCGCTGCCGCGACGTGTGGAGGCAGGAG GCGCGGGGCCGGGCCGCTGCGGCGACGTGTGGAGGCAGGAG Direct Loss 0.97115624608979 0 0.3417682 0 prediction 0.942312492179581 Functional Loss - ATP2B1-AS1 ENSG00000271614 ncRNA_exonic Human lincRNA chr12:90103606 chr12:90103606 . . 0 21 hm5C_associated_SNPs_47492 0 0 0 0 0 unknown 0.500231643828809 0 0 0.000463287657617384 hm5C_site_2812 DeepMRMD:0;iRNA_m5C:0.000463287657617384 2813 chr13 50204648 50204648 1 + C A rs147389782 50204648 + 50204628 50204668 41 GGTGATGATGGGCCTGGACTCGGCGGGCAAGACCACGCTCC GGTGATGATGGGCCTGGACTAGGCGGGCAAGACCACGCTCC Direct Loss 0.971154070400392 0 0.9285948 0 prediction 0.942308140800784 Functional Loss - ARL11 ENSG00000152213 CDS Human protein_coding chr13:50204648 chr13:50204648 stopgain 0.071 0 21 hm5C_associated_SNPs_47493 0 0 0 0 1 Nucleus 0.500230606833737 0 0.8571896 0.000461213667474647 hm5C_site_2813 DeepMRMD:0.8571896;iRNA_m5C:0.000461213667474647 2814 chr2 27375674 27375674 1 + C A LUAD 27375674 + 27375654 27375694 41 AGAGGTGGGGTCCCAAGTCCCTGGAGAGGCAGATGCTCTCC AGAGGTGGGGTCCCAAGTCCATGGAGAGGCAGATGCTCTCC Direct Loss 0.971139673031614 0 0.614345 0 prediction 0.942279346063229 Functional Loss - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27375674 chr2:27375674 nonsynonymous SNV 0.021 2 21 hm5C_associated_SNPs_47494 0 0 0 0 0 exosome 0.500231643921123 0 0.22869 0.000463287842246807 hm5C_site_2814 DeepMRMD:0.22869;iRNA_m5C:0.000463287842246807 2815 chr16 863601 863601 1 + C G BLCA 863601 + 863581 863621 41 CGGGGGACGCTGGCCGGCATCTGGAGACGTCTGTGATCTCC CGGGGGACGCTGGCCGGCATGTGGAGACGTCTGTGATCTCC Direct Loss 0.971107618373482 0 0.8949697 0 prediction 0.942215236746963 Functional Loss - PRR25 ENSG00000167945 CDS Human protein_coding chr16:863601 chr16:863601 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_47495 0 0 0 0 0 exosome 0.500231647561175 0 0.7899394 0.000463295122349772 hm5C_site_2815 DeepMRMD:0.7899394;iRNA_m5C:0.000463295122349772 2816 chr12 51203301 51203301 1 + C A GBM 51203301 + 51203281 51203321 41 AAAAGGAGACGGAGAAAATTCTGGAGTTTCTGCTGCTGTCA AAAAGGAGACGGAGAAAATTATGGAGTTTCTGCTGCTGTCA Direct Loss 0.971101882430352 0 0.8634237 0 prediction 0.942203764860704 Functional Loss - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51203301 chr12:51203301 nonsynonymous SNV 0.956 1 21 hm5C_associated_SNPs_47496 0 0 1 0 2 Cytosol 0.500231643920768 0 0.7268474 0.00046328784153693 hm5C_site_2816 DeepMRMD:0.7268474;iRNA_m5C:0.00046328784153693 2817 chr5 140572729 140572729 1 + C A rs189437073 140572729 + 140572709 140572749 41 TGTTGGACAAAGCACTGGATCGGGAGGAGCAGGGAGAGCTC TGTTGGACAAAGCACTGGATAGGGAGGAGCAGGGAGAGCTC Direct Loss 0.97109988102202 0 0.9305537 0 prediction 0.94219976204404 Functional Loss - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140572729 chr5:140572729 synonymous SNV . 0 21 hm5C_associated_SNPs_47497 0 0 0 0 0 exosome 0.500231719696641 0 0.8611074 0.000463439393282084 hm5C_site_2817 DeepMRMD:0.8611074;iRNA_m5C:0.000463439393282084 2818 chr8 10555444 10555444 1 + C T COAD 10555444 + 10555424 10555464 41 AAGAGGCGCTGCGCCTGGAGCGGGAGAACTCGCTGCAGAAG AAGAGGCGCTGCGCCTGGAGTGGGAGAACTCGCTGCAGAAG Direct Loss 0.971087014491576 0 0.9274168 0 prediction 0.942174028983152 Functional Loss - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555444 chr8:10555444 nonsynonymous SNV 0.003 2 21 hm5C_associated_SNPs_47498 0 0 0 0 1 unknown 0.500231643925539 0 0.8548336 0.000463287851078187 hm5C_site_2818 DeepMRMD:0.8548336;iRNA_m5C:0.000463287851078187 2819 chr19 50154733 50154733 1 + C T BLCA 50154733 + 50154713 50154753 41 GGACCGAGGCAGAGGCTTGTCGGGAAGGCAAGGTCTCGGTG GGACCGAGGCAGAGGCTTGTTGGGAAGGCAAGGTCTCGGTG Direct Loss 0.971076541306575 0 0.8974346 0 prediction 0.94215308261315 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50154733 chr19:50154733 nonsynonymous SNV 0.865 2 21 hm5C_associated_SNPs_47499 0 0 1 0 0 Cytosol 0.500231228048294 0 0.7948692 0.000462456096588237 hm5C_site_2819 DeepMRMD:0.7948692;iRNA_m5C:0.000462456096588237 2820 chr9 140137946 140137946 1 + C G LUSC 140137946 + 140137926 140137966 41 TGTCCGAGTACCAGCAGTACCAGGATGCCACAGCCGAGGAG TGTCCGAGTACCAGCAGTACGAGGATGCCACAGCCGAGGAG Direct Loss 0.971069492625947 0 0.86866814 0 prediction 0.942138985251894 Functional Loss - TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140137946 chr9:140137946 nonsynonymous SNV 0.996 3 21 hm5C_associated_SNPs_47500 0 0 1 0 0 Cytosol 0.500231643907986 0 0.73733628 0.000463287815971158 hm5C_site_2820 DeepMRMD:0.73733628;iRNA_m5C:0.000463287815971158 2821 chr1 16070745 16070745 1 + C T UCEC 16070745 + 16070725 16070765 41 CCTGTGGCCTGAGCTTCCTGCAGGAGGGCGCCCCTCACCGC CCTGTGGCCTGAGCTTCCTGTAGGAGGGCGCCCCTCACCGC Direct Loss 0.971054846128577 0 0.8929008 0 prediction 0.942109692257154 Functional Loss - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16070745 chr1:16070745 stopgain 0.998 0 21 hm5C_associated_SNPs_47501 0 0 0 0 1 exosome 0.500231643921092 0 0.7858016 0.000463287842184856 hm5C_site_2821 DeepMRMD:0.7858016;iRNA_m5C:0.000463287842184856 2822 chr2 241569742 241569742 1 + C A rs34778053 241569742 + 241569722 241569762 41 TGCGGCACCCGCTGCGTGCCCGCGGGCTGCGGTCCCCCAGG TGCGGCACCCGCTGCGTGCCAGCGGGCTGCGGTCCCCCAGG Direct Loss 0.971028339003305 0 0.8973658 0 prediction 0.942056678006609 Functional Loss - GPR35 ENSG00000178623 CDS Human protein_coding chr2:241569742 chr2:241569742 nonsynonymous SNV 0.004 4 21 hm5C_associated_SNPs_47502 0 0 1 0 0 Ribosome 0.500231643921093 0 0.7947316 0.000463287842185078 hm5C_site_2822 DeepMRMD:0.7947316;iRNA_m5C:0.000463287842185078 2823 chr20 35517691 35517691 1 + C T rs148426788 35517691 + 35517671 35517711 41 GGTTGGATGGAGACTTGTTCCGCGGGGGAAGCTCCCCTTGC GGTTGGATGGAGACTTGTTCTGCGGGGGAAGCTCCCCTTGC Direct Loss 0.971012545396227 0 0.9299403 0 prediction 0.942025090792453 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35517691 chr20:35517691 nonsynonymous SNV 0.174 2 21 hm5C_associated_SNPs_47503 0 0 0 0 1 membrane 0.500231641807236 0 0.8598806 0.00046328361447201 hm5C_site_2823 DeepMRMD:0.8598806;iRNA_m5C:0.00046328361447201 2824 chr5 129240924 129240924 1 + C G rs556180521 129240924 + 129240904 129240944 41 CCAGCGGCCGAGGGGGAGCCCGAGGAGGAGGACGGGGGCGC CCAGCGGCCGAGGGGGAGCCGGAGGAGGAGGACGGGGGCGC Direct Loss 0.970994522663675 0 0.9043968 0 prediction 0.941989045327349 Functional Loss - CHSY3 ENSG00000198108 CDS Human protein_coding chr5:129240924 chr5:129240924 synonymous SNV . 0 21 hm5C_associated_SNPs_47504 0 0 0 0 0 exosome 0.500231643928251 0 0.8087936 0.000463287856502737 hm5C_site_2824 DeepMRMD:0.8087936;iRNA_m5C:0.000463287856502737 2825 chr16 85952315 85952315 1 + C T rs61995933 85952315 + 85952295 85952335 41 CTGTGCCAGGGCCGCGTGTTCTGCAGCGGCAACGCCGTGGT CTGTGCCAGGGCCGCGTGTTTTGCAGCGGCAACGCCGTGGT Direct Loss 0.970992802760151 0 0.39237204 0 prediction 0.941985605520302 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85952315 chr16:85952315 synonymous SNV . 0 21 hm5C_associated_SNPs_47505 0 0 0 0 1 Endoplasmic reticulum 0.500231641929411 0 0 0.000463283858822772 hm5C_site_2825 DeepMRMD:0;iRNA_m5C:0.000463283858822772 2826 chr1 229771163 229771163 1 + C T STAD 229771163 + 229771143 229771183 41 GCAGCAAGGGGATGTGAAGACGGGAGCCATGAAGAACCTTC GCAGCAAGGGGATGTGAAGATGGGAGCCATGAAGAACCTTC Direct Loss 0.970989880852527 0 0.32632652 0 prediction 0.941979761705055 Functional Loss - URB2 ENSG00000135763 CDS Human protein_coding chr1:229771163 chr1:229771163 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47506 0 0 1 0 0 Nucleus 0.500231642453833 0 0 0.00046328490766645 hm5C_site_2826 DeepMRMD:0;iRNA_m5C:0.00046328490766645 2827 chr1 173454569 173454569 1 + C T BLCA 173454569 + 173454549 173454589 41 CCATCATCGATGATAGGAATCGGGAGCTTGCCATCCTGTTG CCATCATCGATGATAGGAATTGGGAGCTTGCCATCCTGTTG Direct Loss 0.970977565666125 0 0.9118811 0 prediction 0.941955131332251 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454569 chr1:173454569 nonsynonymous SNV 0.398 3 21 hm5C_associated_SNPs_47507 0 0 1 0 2 Ribosome 0.500231643794009 0 0.8237622 0.000463287588017058 hm5C_site_2827 DeepMRMD:0.8237622;iRNA_m5C:0.000463287588017058 2828 chr17 76134132 76134132 1 + C T LGG 76134132 + 76134112 76134152 41 GGTTCTGGGCCTGGCTGGAACGGGAGGAGTTCCTGGTCCCC GGTTCTGGGCCTGGCTGGAATGGGAGGAGTTCCTGGTCCCC Direct Loss 0.970971550756946 0 0.93560326 0 prediction 0.941943101513892 Functional Loss - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76134132 chr17:76134132 nonsynonymous SNV 0.993 3 21 hm5C_associated_SNPs_47508 0 0 1 0 1 chromatin 0.500231643921092 0 0.87120652 0.000463287842184856 hm5C_site_2828 DeepMRMD:0.87120652;iRNA_m5C:0.000463287842184856 2829 chr20 62493445 62493445 1 + C T READ 62493445 + 62493425 62493465 41 GAAGGCAACGCGGGCTTCTACGAGATGGGCTGTCTGTCTGC GAAGGCAACGCGGGCTTCTATGAGATGGGCTGTCTGTCTGC Direct Loss 0.970970871025533 0 0.91801155 0 prediction 0.941941742051067 Functional Loss - ABHD16B ENSG00000183260 CDS Human protein_coding chr20:62493445 chr20:62493445 synonymous SNV . 0 21 hm5C_associated_SNPs_47509 0 0 0 0 0 exosome 0.500231643919518 0 0.8360231 0.000463287839036264 hm5C_site_2829 DeepMRMD:0.8360231;iRNA_m5C:0.000463287839036264 2830 chr15 95399667 95399667 1 + C A rs567683681 95399667 + 95399647 95399687 41 GGGCCGGAGGCTGGGGATGCCGAGGTCTGTCCCACGCCCAC GGGCCGGAGGCTGGGGATGCAGAGGTCTGTCCCACGCCCAC Direct Loss 0.970909169371746 0 0.9320911 0 prediction 0.941818338743491 Functional Loss - LOC440311 ENSG00000260521 ncRNA_exonic Human processed_pseudogene chr15:95399667 chr15:95399667 . . 0 21 hm5C_associated_SNPs_47510 0 0 1 0 0 unknown 0.500231643783865 0 0.8641822 0.000463287567730841 hm5C_site_2830 DeepMRMD:0.8641822;iRNA_m5C:0.000463287567730841 2831 chr14 20924986 20924986 1 + C T HNSC 20924986 + 20924966 20925006 41 GTGGCGTGGGCCTGCTTTCCCGCCAGTGCCCACTCAAAGTT GTGGCGTGGGCCTGCTTTCCTGCCAGTGCCCACTCAAAGTT Direct Loss 0.970886058098691 0 0.16893655 0 prediction 0.941772116197382 Functional Loss - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20924986 chr14:20924986 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47511 0 0 1 0 1 Cytosol 0.500231642435963 0 0 0.000463284871925707 hm5C_site_2831 DeepMRMD:0;iRNA_m5C:0.000463284871925707 2832 chr18 47919628 47919628 1 + C T rs189155432 47919628 + 47919608 47919648 41 AGGTGGAGGTTGCAGTGAGCCGAGATCGTGCCACTGCACTC AGGTGGAGGTTGCAGTGAGCTGAGATCGTGCCACTGCACTC Direct Loss 0.97087528318506 0 0.86861885 0 prediction 0.941750566370119 Functional Loss - SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47919628 chr18:47919628 . . 0 21 hm5C_associated_SNPs_47512 0 0 1 0 0 Cytosol 0.500232636816602 0 0.7372377 0.000465273633204921 hm5C_site_2832 DeepMRMD:0.7372377;iRNA_m5C:0.000465273633204921 2833 chr14 50088216 50088216 1 + C T LUSC 50088216 + 50088196 50088236 41 GTCGGCGGCTTCCCTGGTCCCGGCGGTCCCCCAGCCCGAGG GTCGGCGGCTTCCCTGGTCCTGGCGGTCCCCCAGCCCGAGG Direct Loss 0.97085660561325 0 0.87931687 0 prediction 0.9417132112265 Functional Loss - MGAT2 ENSG00000168282 CDS Human protein_coding chr14:50088216 chr14:50088216 nonsynonymous SNV 0.010 1 21 hm5C_associated_SNPs_47513 0 0 1 0 0 Endoplasmic reticulum 0.500231640467375 0 0.75863374 0.000463280934749788 hm5C_site_2833 DeepMRMD:0.75863374;iRNA_m5C:0.000463280934749788 2834 chr14 20248925 20248925 1 + C A UCEC 20248925 + 20248905 20248945 41 TGTATCCTGGTGGCTCTCTCCTGGATGGGGGGCTTCATTCA TGTATCCTGGTGGCTCTCTCATGGATGGGGGGCTTCATTCA Direct Loss 0.970845637736576 0 0.8154774 0 prediction 0.941691275473153 Functional Loss - OR4M1 ENSG00000176299 CDS Human protein_coding chr14:20248925 chr14:20248925 synonymous SNV . 0 21 hm5C_associated_SNPs_47514 0 0 0 0 0 unknown 0.500231039933028 0 0.6309548 0.000462079866056397 hm5C_site_2834 DeepMRMD:0.6309548;iRNA_m5C:0.000462079866056397 2835 chr17 6927092 6927092 1 + C T CESC 6927092 + 6927072 6927112 41 CTCAACGAGCTGCGCCTGCGCGGGATCCTCACTGACGTCAC CTCAACGAGCTGCGCCTGCGTGGGATCCTCACTGACGTCAC Direct Loss 0.970828432661515 0 0.8290272 0 prediction 0.941656865323031 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927092 chr17:6927092 synonymous SNV . 0 21 hm5C_associated_SNPs_47515 0 0 0 0 1 Endoplasmic reticulum 0.500231603633914 0 0.6580544 0.000463207267828114 hm5C_site_2835 DeepMRMD:0.6580544;iRNA_m5C:0.000463207267828114 2836 chr5 139189358 139189358 1 + C T SKCM 139189358 + 139189338 139189378 41 GCAGAGGGGGACAATGCTTCCAGGAGCCTCTACCCAGATGC GCAGAGGGGGACAATGCTTCTAGGAGCCTCTACCCAGATGC Direct Loss 0.970787771491918 0 0.90379393 0 prediction 0.941575542983835 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139189358 chr5:139189358 synonymous SNV . 0 21 hm5C_associated_SNPs_47516 0 0 0 0 1 exosome 0.500231643907815 0 0.80758786 0.000463287815630098 hm5C_site_2836 DeepMRMD:0.80758786;iRNA_m5C:0.000463287815630098 2837 chr10 5567552 5567552 1 + C T rs185046336 5567552 + 5567532 5567572 41 CGGCCCACAGGGCAAGAACCCGGGGCCTCCCGCCTCCTCCC CGGCCCACAGGGCAAGAACCTGGGGCCTCCCGCCTCCTCCC Direct Loss 0.970779382846484 0 0.9601115 0 prediction 0.941558765692968 Functional Loss - CALML3-AS1 ENSG00000205488;ENSG00000256462 ncRNA_intronic Human other chr10:5567552 chr10:5567552 . . 0 21 hm5C_associated_SNPs_47517 0 0 0 0 0 unknown 0.500231653390945 0 0.920223 0.000463306781890882 hm5C_site_2837 DeepMRMD:0.920223;iRNA_m5C:0.000463306781890882 2838 chr11 32610244 32610244 1 + C T SKCM 32610244 + 32610224 32610264 41 GTGAAAAGCTGGTCAAATTTCGCGAAGGTGAACGCCCGTCT GTGAAAAGCTGGTCAAATTTTGCGAAGGTGAACGCCCGTCT Direct Loss 0.970762339235932 0 0.56807196 0 prediction 0.941524678471864 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32610244 chr11:32610244 nonsynonymous SNV 0.986 2 21 hm5C_associated_SNPs_47518 0 0 1 0 1 Cytosol 0.50023164622995 0 0.13614392 0.000463292459900178 hm5C_site_2838 DeepMRMD:0.13614392;iRNA_m5C:0.000463292459900178 2839 chr1 152785089 152785089 1 + C G CESC 152785089 + 152785069 152785109 41 AGGCTGCTGTGGCTCCAGCTCTGGGGGAAGCTGTGGCTCCA AGGCTGCTGTGGCTCCAGCTGTGGGGGAAGCTGTGGCTCCA Direct Loss 0.970756124933792 0 0.9153625 0 prediction 0.941512249867584 Functional Loss - LCE1B ENSG00000196734 CDS Human protein_coding chr1:152785089 chr1:152785089 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_47519 0 0 0 0 0 unknown 0.500230911987646 0 0.830725 0.00046182397529293 hm5C_site_2839 DeepMRMD:0.830725;iRNA_m5C:0.00046182397529293 2840 chr1 32751144 32751144 1 + C G LUAD 32751144 + 32751124 32751164 41 ACCCGGAGGTGATTCAGAACCTGGAGCGAGGCTACCGCATG ACCCGGAGGTGATTCAGAACGTGGAGCGAGGCTACCGCATG Direct Loss 0.970724665584964 0 0.2902942 0 prediction 0.941449331169929 Functional Loss - LCK ENSG00000182866 CDS Human protein_coding chr1:32751144 chr1:32751144 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_47520 0 0 0 0 1 Cytosol 0.500231532693613 0 0 0.000463065387225514 hm5C_site_2840 DeepMRMD:0;iRNA_m5C:0.000463065387225514 2841 chr5 110560256 110560256 1 + C G BLCA 110560256 + 110560236 110560276 41 GCCAGTGCGGCCCCGGGGACCGCGAGCCTCGTCCCGGATTA GCCAGTGCGGCCCCGGGGACGGCGAGCCTCGTCCCGGATTA Direct Loss 0.970686240930806 0 0.5596501 0 prediction 0.941372481861612 Functional Loss - CAMK4 ENSG00000152495 CDS Human protein_coding chr5:110560256 chr5:110560256 synonymous SNV . 0 21 hm5C_associated_SNPs_47521 0 0 0 0 1 chromatin 0.500231643921092 0 0.1193002 0.000463287842184856 hm5C_site_2841 DeepMRMD:0.1193002;iRNA_m5C:0.000463287842184856 2842 chr1 206808901 206808901 1 + C T rs201102051 206808901 + 206808881 206808921 41 ACTTCCCAGCCGGGGCCAGTCGGGAGCGAAAGTGCGCTGAG ACTTCCCAGCCGGGGCCAGTTGGGAGCGAAAGTGCGCTGAG Direct Loss 0.970677012880231 0 0.91759753 0 prediction 0.941354025760462 Functional Loss - DYRK3 ENSG00000237605 ncRNA_intronic Human antisense chr1:206808901 chr1:206808901 . . 0 21 hm5C_associated_SNPs_47522 0 0 1 0 0 Cytosol 0.500226981487002 0 0.83519506 0.000453962974003019 hm5C_site_2842 DeepMRMD:0.83519506;iRNA_m5C:0.000453962974003019 2843 chr19 47844503 47844503 1 + C T OV 47844503 + 47844483 47844523 41 TCTACGGTTCAGCGGGCGTGCGGGGTGCAGGTGGCCTGTGG TCTACGGTTCAGCGGGCGTGTGGGGTGCAGGTGGCCTGTGG Direct Loss 0.970673208224533 0 0.93722975 0 prediction 0.941346416449065 Functional Loss - C5AR2 ENSG00000134830 CDS Human protein_coding chr19:47844503 chr19:47844503 synonymous SNV . 0 21 hm5C_associated_SNPs_47523 0 0 0 0 0 exosome 0.500231643920996 0 0.8744595 0.000463287841991677 hm5C_site_2843 DeepMRMD:0.8744595;iRNA_m5C:0.000463287841991677 2844 chr7 150068940 150068940 1 + C A PAAD 150068940 + 150068920 150068960 41 GGGTGCACGTAGCTGAGGCCCTGGAGGAGGCCGCAGCCAAG GGGTGCACGTAGCTGAGGCCATGGAGGAGGCCGCAGCCAAG Direct Loss 0.970667504368087 0 0.8974895 0 prediction 0.941335008736175 Functional Loss - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150068940 chr7:150068940 nonsynonymous SNV 0.991 2 21 hm5C_associated_SNPs_47524 0 0 1 0 0 Endoplasmic reticulum 0.500231643921521 0 0.794979 0.000463287843042393 hm5C_site_2844 DeepMRMD:0.794979;iRNA_m5C:0.000463287843042393 2845 chr3 41275738 41275738 1 + C T SKCM 41275738 + 41275718 41275758 41 AGTTGCTTGTTCGTGCACATCAGGATACCCAGCGCCGTACG AGTTGCTTGTTCGTGCACATTAGGATACCCAGCGCCGTACG Direct Loss 0.970646181438238 0 0.8894489 0 prediction 0.941292362876477 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275738 chr3:41275738 stopgain 0.586 1 21 hm5C_associated_SNPs_47525 0 0 1 1 1 Nucleus 0.50023164125845 0 0.7788978 0.000463282516899755 hm5C_site_2845 DeepMRMD:0.7788978;iRNA_m5C:0.000463282516899755 2846 chr17 9536293 9536293 1 + C T rs187332485 9536293 + 9536273 9536313 41 GCTCACAGGATCGGCGTCACCGCCATCGCCACCACCAGTGA GCTCACAGGATCGGCGTCACTGCCATCGCCACCACCAGTGA Direct Loss 0.970638863765524 0 0.12227112 0 prediction 0.941277727531048 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9536293 chr17:9536293 synonymous SNV . 0 21 hm5C_associated_SNPs_47526 0 0 0 0 2 nucleus 0.500237723984869 0 0 0.00047544796973753 hm5C_site_2846 DeepMRMD:0;iRNA_m5C:0.00047544796973753 2847 chr17 45369787 45369787 1 + C T STAD 45369787 + 45369767 45369807 41 AGCAGGACGAATGCAGCCCCCGGGAGGGTCAGCCCGTCTGC AGCAGGACGAATGCAGCCCCTGGGAGGGTCAGCCCGTCTGC Direct Loss 0.970634359667735 0 0.90051985 0 prediction 0.941268719335471 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45369787 chr17:45369787 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_47527 0 0 0 0 0 cytosol 0.500231643921092 0 0.8010397 0.000463287842183968 hm5C_site_2847 DeepMRMD:0.8010397;iRNA_m5C:0.000463287842183968 2848 chr16 68328627 68328627 1 + C T CESC 68328627 + 68328607 68328647 41 GGTTGTTCTTCGTGGGCTCCCGGGAGGGCCACCTACCGGAC GGTTGTTCTTCGTGGGCTCCTGGGAGGGCCACCTACCGGAC Direct Loss 0.970631125091982 0 0.9503205 0 prediction 0.941262250183964 Functional Loss - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68328627 chr16:68328627 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_47528 0 0 1 0 2 Ribosome 0.500231643920623 0 0.900641 0.000463287841245164 hm5C_site_2848 DeepMRMD:0.900641;iRNA_m5C:0.000463287841245164 2849 chr10 35897387 35897387 1 + C A rs370286081 35897387 + 35897367 35897407 41 AGCCCCGGGGCAGGCCCCACCGAGAGGCCGCCCAGGACCCC AGCCCCGGGGCAGGCCCCACAGAGAGGCCGCCCAGGACCCC Direct Loss 0.970630833377807 0 0.8768258 0 prediction 0.941261666755614 Functional Loss - GJD4 ENSG00000177291 CDS Human protein_coding chr10:35897387 chr10:35897387 synonymous SNV . 0 21 hm5C_associated_SNPs_47529 0 0 0 0 0 exosome 0.500231643798539 0 0.7536516 0.000463287597078921 hm5C_site_2849 DeepMRMD:0.7536516;iRNA_m5C:0.000463287597078921 2850 chr12 107168503 107168503 1 + G C rs368458606 107168503 - 107168483 107168523 41 GGCCGCAGGTGCGGGGGAGCCGCGGCCGCTCTGCGCGCCCA GGCCGCAGGTGCGGGGGAGCGGCGGCCGCTCTGCGCGCCCA Direct Loss 0.970623960904588 0 0.91854024 0 prediction 0.941247921809175 Functional Loss - LOC100287944 ENSG00000111785;ENSG00000257545 CDS Human other chr12:107168503 chr12:107168503 synonymous SNV . 0 21 hm5C_associated_SNPs_47530 0 0 0 0 1 unknown 0.500231643921092 0 0.83708048 0.000463287842184856 hm5C_site_2850 DeepMRMD:0.83708048;iRNA_m5C:0.000463287842184856 2851 chr2 62449557 62449557 1 + C T PAAD 62449557 + 62449537 62449577 41 GAGAGCAAGAGAAGCTGAACCGGCAGTACAACCCCATCCTG GAGAGCAAGAGAAGCTGAACTGGCAGTACAACCCCATCCTG Direct Loss 0.970578099603634 0 0.9066824 0 prediction 0.941156199207269 Functional Loss - B3GNT2 ENSG00000170340 CDS Human protein_coding chr2:62449557 chr2:62449557 nonsynonymous SNV 0.970 0 21 hm5C_associated_SNPs_47531 0 0 1 0 0 Ribosome 0.50024334870491 0 0.8133648 0.000486697409820769 hm5C_site_2851 DeepMRMD:0.8133648;iRNA_m5C:0.000486697409820769 2852 chr19 55420752 55420752 1 + C A LUAD 55420752 + 55420732 55420772 41 AGCCACGTACAGCGCGGATACGGGAAGGTCCAGGCGGAGTT AGCCACGTACAGCGCGGATAAGGGAAGGTCCAGGCGGAGTT Direct Loss 0.970548392898997 0 0.86160934 0 prediction 0.941096785797993 Functional Loss - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55420752 chr19:55420752 stopgain 0.000 0 21 hm5C_associated_SNPs_47532 0 0 0 0 0 exosome 0.500231643921092 0 0.72321868 0.000463287842184856 hm5C_site_2852 DeepMRMD:0.72321868;iRNA_m5C:0.000463287842184856 2853 chr19 45563845 45563845 1 + C T UCEC 45563845 + 45563825 45563865 41 GACGCCAGCGGAGAGAGTTTCGGGAGAAGCGGCTGAGGGGT GACGCCAGCGGAGAGAGTTTTGGGAGAAGCGGCTGAGGGGT Direct Loss 0.970521338241946 0 0.9603206 0 prediction 0.941042676483892 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45563845 chr19:45563845 nonsynonymous SNV 0.993 3 21 hm5C_associated_SNPs_47533 0 0 1 0 2 chromatin 0.500231644058425 0 0.9206412 0.000463288116849814 hm5C_site_2853 DeepMRMD:0.9206412;iRNA_m5C:0.000463288116849814 2854 chr16 50583388 50583388 1 + C T KIRC 50583388 + 50583368 50583408 41 AAGGGCATCGAGGAGTGGATCGGGAGACAGCGCTGCCCGGG AAGGGCATCGAGGAGTGGATTGGGAGACAGCGCTGCCCGGG Direct Loss 0.970513800130353 0 0.9401869 0 prediction 0.941027600260707 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50583388 chr16:50583388 synonymous SNV . 0 21 hm5C_associated_SNPs_47534 0 0 1 0 2 chromatin 0.50023164392249 0 0.8803738 0.000463287844979732 hm5C_site_2854 DeepMRMD:0.8803738;iRNA_m5C:0.000463287844979732 2855 chr1 112298676 112298676 1 + C G LUAD 112298676 + 112298656 112298696 41 TGAGGATCCTGCGGACCGCTCAGGATCTCAGCAGCCCGCGG TGAGGATCCTGCGGACCGCTGAGGATCTCAGCAGCCCGCGG Direct Loss 0.970498576891335 0 0.9109211 0 prediction 0.94099715378267 Functional Loss - DDX20 ENSG00000064703 CDS Human protein_coding chr1:112298676 chr1:112298676 nonsynonymous SNV 0.318 1 21 hm5C_associated_SNPs_47535 0 0 1 0 0 Ribosome 0.500185073643317 0 0.8218422 0.000370147286633093 hm5C_site_2855 DeepMRMD:0.8218422;iRNA_m5C:0.000370147286633093 2856 chrX 153674213 153674213 1 + C T UCEC 153674213 + 153674193 153674233 41 AGGAGGCTCTGGTGAAGGAGCGGGAGAAGCAGCTGGCCAAG AGGAGGCTCTGGTGAAGGAGTGGGAGAAGCAGCTGGCCAAG Direct Loss 0.97049016622576 0 0.9069275 0 prediction 0.94098033245152 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153674213 chrX:153674213 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47536 0 0 1 0 2 Ribosome 0.500231644731603 0 0.813855 0.000463289463206173 hm5C_site_2856 DeepMRMD:0.813855;iRNA_m5C:0.000463289463206173 2857 chr4 25314443 25314443 1 + C T SKCM 25314443 + 25314423 25314463 41 GGCGGGAAGATGGCGGCCTCCAGGAATGGGTTTGAAGCCGT GGCGGGAAGATGGCGGCCTCTAGGAATGGGTTTGAAGCCGT Direct Loss 0.970488487908232 0 0.81437135 0 prediction 0.940976975816463 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25314443 chr4:25314443 synonymous SNV . 0 21 hm5C_associated_SNPs_47537 0 0 1 0 0 chromatin 0.500231643899251 0 0.6287427 0.000463287798502465 hm5C_site_2857 DeepMRMD:0.6287427;iRNA_m5C:0.000463287798502465 2858 chr1 248525492 248525492 1 + C T COAD 248525492 + 248525472 248525512 41 CCTTCCCCTTCCGTGGATCCCGGGAGATTCATCATTTCTTC CCTTCCCCTTCCGTGGATCCTGGGAGATTCATCATTTCTTC Direct Loss 0.970488236623398 0 0.8899338 0 prediction 0.940976473246796 Functional Loss - OR2T4 ENSG00000196944 CDS Human protein_coding chr1:248525492 chr1:248525492 nonsynonymous SNV 0.057 1 21 hm5C_associated_SNPs_47538 0 0 0 0 0 unknown 0.500231643921093 0 0.7798676 0.000463287842185967 hm5C_site_2858 DeepMRMD:0.7798676;iRNA_m5C:0.000463287842185967 2859 chr14 50360229 50360229 1 + C G rs112017635 50360229 + 50360209 50360249 41 GGCGGCTCCCAGCGCAGTCTCAGGGCCCGGGTGGCGGCGGC GGCGGCTCCCAGCGCAGTCTGAGGGCCCGGGTGGCGGCGGC Direct Loss 0.970467674484129 0 0.9362254 0 prediction 0.940935348968257 Functional Loss - ARF6 ENSG00000165527 UTR5 Human protein_coding chr14:50360229 chr14:50360229 . . 0 21 hm5C_associated_SNPs_47539 0 0 1 0 0 Cytosol 0.500231643907538 0 0.8724508 0.000463287815075208 hm5C_site_2859 DeepMRMD:0.8724508;iRNA_m5C:0.000463287815075208 2860 chr9 77703431 77703431 1 + C T rs73544571 77703431 + 77703411 77703451 41 CCGCGGGGCGGGGCGGAGCACTCGGCGGAGCCGCTCTGCCT CCGCGGGGCGGGGCGGAGCATTCGGCGGAGCCGCTCTGCCT Direct Loss 0.970462264717287 0 0.8272756 0 prediction 0.940924529434575 Functional Loss - OSTF1 ENSG00000106733;ENSG00000134996 upstream Human other chr9:77703431 chr9:77703431 . . 0 21 hm5C_associated_SNPs_47540 0 0 1 0 0 Cytosol 0.500231643921127 0 0.6545512 0.000463287842253246 hm5C_site_2860 DeepMRMD:0.6545512;iRNA_m5C:0.000463287842253246 2861 chr14 57857978 57857978 1 + C G HNSC 57857978 + 57857958 57857998 41 CTCCGGGCGGCCGCCTCCCTCAAGAGCAAGGTCCTGAGCGT CTCCGGGCGGCCGCCTCCCTGAAGAGCAAGGTCCTGAGCGT Direct Loss 0.970448051235131 0 0.9118923 0 prediction 0.940896102470262 Functional Loss - NAA30 ENSG00000139977 CDS Human protein_coding chr14:57857978 chr14:57857978 synonymous SNV . 0 21 hm5C_associated_SNPs_47541 0 0 0 0 0 Ribosome 0.500231643921092 0 0.8237846 0.000463287842184856 hm5C_site_2861 DeepMRMD:0.8237846;iRNA_m5C:0.000463287842184856 2862 chr1 22970642 22970642 1 + C T rs15940 22970642 + 22970622 22970662 41 CCAGGGATGCCCGGCCTGCCCGGGGCACCAGGGAAGGATGG CCAGGGATGCCCGGCCTGCCTGGGGCACCAGGGAAGGATGG Direct Loss 0.970443876644383 0 0.91175693 0 prediction 0.940887753288767 Functional Loss - C1QC ENSG00000159189 CDS Human protein_coding chr1:22970642 chr1:22970642 synonymous SNV . 0 21 hm5C_associated_SNPs_47542 0 0 0 0 1 Cytosol 0.500231643921092 0 0.82351386 0.000463287842184856 hm5C_site_2862 DeepMRMD:0.82351386;iRNA_m5C:0.000463287842184856 2863 chr15 34355212 34355212 1 + C T STAD 34355212 + 34355192 34355232 41 CTCATGGGACGCTGGGCTCTCGGGAGTCTGGCTTGTGACCT CTCATGGGACGCTGGGCTCTTGGGAGTCTGGCTTGTGACCT Direct Loss 0.970437416733233 0 0.951264 0 prediction 0.940874833466466 Functional Loss - CHRM5 ENSG00000184984 CDS Human protein_coding chr15:34355212 chr15:34355212 synonymous SNV . 0 21 hm5C_associated_SNPs_47543 0 0 0 0 0 cytosol 0.500231643915223 0 0.902528 0.000463287830445802 hm5C_site_2863 DeepMRMD:0.902528;iRNA_m5C:0.000463287830445802 2864 chr4 48863493 48863493 1 + C G rs115452191 48863493 + 48863473 48863513 41 GTGGGAGGATTGCATGAGTCCAGGAGTTTGAGACCAGCCTG GTGGGAGGATTGCATGAGTCGAGGAGTTTGAGACCAGCCTG Direct Loss 0.970415016963167 0 0.8930348 0 prediction 0.940830033926334 Functional Loss - OCIAD1 ENSG00000109180 UTR3 Human protein_coding chr4:48863493 chr4:48863493 . . 0 21 hm5C_associated_SNPs_47544 0 0 0 1 0 Ribosome 0.500231651189545 0 0.7860696 0.000463302379090536 hm5C_site_2864 DeepMRMD:0.7860696;iRNA_m5C:0.000463302379090536 Systolic blood pressure 2865 chr3 98073149 98073149 1 + C T SKCM 98073149 + 98073129 98073169 41 GACCACAGGGGCCTTCAAAGCTGGAAACCTGCATTCCATGA GACCACAGGGGCCTTCAAAGTTGGAAACCTGCATTCCATGA Direct Loss 0.970401834848217 0 0.4921445 0 prediction 0.940803669696435 Functional Loss - OR5K4 ENSG00000196098 CDS Human protein_coding chr3:98073149 chr3:98073149 nonsynonymous SNV 0.923 0 21 hm5C_associated_SNPs_47545 0 0 0 0 0 unknown 0.500231643921088 0 0 0.000463287842176641 hm5C_site_2865 DeepMRMD:0;iRNA_m5C:0.000463287842176641 2866 chr8 11142166 11142166 1 + C A rs562455672 11142166 + 11142146 11142186 41 GCCTGGTGAACCGCGCGGTGCGGGAGAGGCGCTTGGGCCTC GCCTGGTGAACCGCGCGGTGAGGGAGAGGCGCTTGGGCCTC Direct Loss 0.970389113416442 0 0.89088714 0 prediction 0.940778226832885 Functional Loss - MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142166 chr8:11142166 . . 0 21 hm5C_associated_SNPs_47546 0 0 1 0 0 Ribosome 0.500231655698814 0 0.78177428 0.000463311397627564 hm5C_site_2866 DeepMRMD:0.78177428;iRNA_m5C:0.000463311397627564 2867 chr10 82331305 82331305 1 + C T SKCM 82331305 + 82331285 82331325 41 ACCGCAAGGCTGCCAAAGTCCTGGAGGAACGCATCCACGAG ACCGCAAGGCTGCCAAAGTCTTGGAGGAACGCATCCACGAG Direct Loss 0.9703667497936 0 0.30961114 0 prediction 0.940733499587201 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82331305 chr10:82331305 synonymous SNV . 0 21 hm5C_associated_SNPs_47547 0 0 0 0 1 exosome 0.500231643921091 0 0 0.000463287842182858 hm5C_site_2867 DeepMRMD:0;iRNA_m5C:0.000463287842182858 2868 chr8 57358431 57358431 1 + G A LUAD 57358431 - 57358411 57358451 41 CCGTGCGGGCCGAATGCAGCCAGGATTGCGCGACGTGCAGC CCGTGCGGGCCGAATGCAGCTAGGATTGCGCGACGTGCAGC Direct Loss 0.970360369907086 0 0.88641644 0 prediction 0.940720739814172 Functional Loss - PENK ENSG00000181195 CDS Human protein_coding chr8:57358431 chr8:57358431 stopgain 0.983 1 21 hm5C_associated_SNPs_47548 0 0 0 0 2 exosome 0.500231738979279 0 0.77283288 0.000463477958557279 hm5C_site_2868 DeepMRMD:0.77283288;iRNA_m5C:0.000463477958557279 2869 chr11 4903210 4903210 1 + C G rs73405010 4903210 + 4903190 4903230 41 GGGCTGGAATGTGCTCATGTCTGGATCTCCATTCCAGTCTG GGGCTGGAATGTGCTCATGTGTGGATCTCCATTCCAGTCTG Direct Loss 0.970340749535329 0 0.13703033 0 prediction 0.940681499070658 Functional Loss - OR51T1 ENSG00000176900 CDS Human protein_coding chr11:4903210 chr11:4903210 synonymous SNV . 0 21 hm5C_associated_SNPs_47549 0 0 0 0 0 unknown 0.500170596562227 0 0 0.000341193124454131 hm5C_site_2869 DeepMRMD:0;iRNA_m5C:0.000341193124454131 Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy) 2870 chr7 19184911 19184911 1 + C T UCEC 19184911 + 19184891 19184931 41 TCGCAGAGGAGAGGGCGTCTCGGGGAGGCCAGGGACAGGTC TCGCAGAGGAGAGGGCGTCTTGGGGAGGCCAGGGACAGGTC Direct Loss 0.970328780648879 0 0.942817 0 prediction 0.940657561297758 Functional Loss - FERD3L ENSG00000146618 CDS Human protein_coding chr7:19184911 chr7:19184911 synonymous SNV . 0 21 hm5C_associated_SNPs_47550 0 0 0 0 0 unknown 0.500231643921077 0 0.885634 0.000463287842154214 hm5C_site_2870 DeepMRMD:0.885634;iRNA_m5C:0.000463287842154214 2871 chrX 136648925 136648925 1 + C T UCEC 136648925 + 136648905 136648945 41 TTCGGCGCGCCGCGCCACCACGAGATGCCCAACCGTGAGCC TTCGGCGCGCCGCGCCACCATGAGATGCCCAACCGTGAGCC Direct Loss 0.970317722412228 0 0.80004597 0 prediction 0.940635444824456 Functional Loss - ZIC3 ENSG00000156925 CDS Human protein_coding chrX:136648925 chrX:136648925 synonymous SNV . 0 21 hm5C_associated_SNPs_47551 0 0 0 0 0 exosome 0.500231632810698 0 0.60009194 0.000463265621396536 hm5C_site_2871 DeepMRMD:0.60009194;iRNA_m5C:0.000463265621396536 2872 chr19 51363345 51363345 1 + C T LUSC 51363345 + 51363325 51363365 41 ACACCAAGGTGGTGCATTACCGGAAGTGGATCAAGGACACC ACACCAAGGTGGTGCATTACTGGAAGTGGATCAAGGACACC Direct Loss 0.97031101698239 0 0.8871434 0 prediction 0.94062203396478 Functional Loss - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51363345 chr19:51363345 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47552 0 0 0 0 0 Cytosol 0.500231583545535 0 0.7742868 0.000463167091069971 hm5C_site_2872 DeepMRMD:0.7742868;iRNA_m5C:0.000463167091069971 2873 chr16 31139397 31139397 1 + C T LUSC 31139397 + 31139377 31139417 41 TGCCAGTGGCGGCAGCCCCCCGGGAAAGAGATCTACCGCAA TGCCAGTGGCGGCAGCCCCCTGGGAAAGAGATCTACCGCAA Direct Loss 0.970309295314741 0 0.8535193 0 prediction 0.940618590629482 Functional Loss - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31139397 chr16:31139397 synonymous SNV . 0 21 hm5C_associated_SNPs_47553 0 0 1 0 1 Ribosome 0.500231643925853 0 0.7070386 0.000463287851705019 hm5C_site_2873 DeepMRMD:0.7070386;iRNA_m5C:0.000463287851705019 2874 chr5 72794607 72794607 1 + C T CESC 72794607 + 72794587 72794627 41 CTCCACCTCGCGGCGGAACCCGAGGACAGGAGCCTCAGGTA CTCCACCTCGCGGCGGAACCTGAGGACAGGAGCCTCAGGTA Direct Loss 0.97030106078264 0 0.91641665 0 prediction 0.940602121565279 Functional Loss - BTF3 ENSG00000145741 CDS Human protein_coding chr5:72794607 chr5:72794607 stopgain 0.999 0 21 hm5C_associated_SNPs_47554 0 0 0 0 1 Ribosome 0.500231643884485 0 0.8328333 0.000463287768970977 hm5C_site_2874 DeepMRMD:0.8328333;iRNA_m5C:0.000463287768970977 2875 chr19 15905273 15905273 1 + C T ACC 15905273 + 15905253 15905293 41 ACAACGTGCTCATGAGCCTGCGGGGCTGCACCTGCCGGGTG ACAACGTGCTCATGAGCCTGTGGGGCTGCACCTGCCGGGTG Direct Loss 0.970300100655937 0 0.8755874 0 prediction 0.940600201311873 Functional Loss - OR10H5 ENSG00000172519 CDS Human protein_coding chr19:15905273 chr19:15905273 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_47555 0 0 0 0 0 unknown 0.500231643925051 0 0.7511748 0.000463287850102745 hm5C_site_2875 DeepMRMD:0.7511748;iRNA_m5C:0.000463287850102745 2876 chr3 142840292 142840292 1 + C T rs72551382 142840292 + 142840272 142840312 41 ATCCGGGGGACGCCGTTTCCCTGCAGGGGGCAGCGCGGGAC ATCCGGGGGACGCCGTTTCCTTGCAGGGGGCAGCGCGGGAC Direct Loss 0.970298817606731 0 0.38381076 0 prediction 0.940597635213463 Functional Loss - CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840292 chr3:142840292 synonymous SNV . 0 21 hm5C_associated_SNPs_47556 0 0 1 0 0 cytosol 0.500231651296405 0 0 0.000463302592810688 hm5C_site_2876 DeepMRMD:0;iRNA_m5C:0.000463302592810688 2877 chr9 132565593 132565593 1 + C T CESC 132565593 + 132565573 132565613 41 ATCACCGTGGGCCTAGCCATCGGGGCCGCGTCGGCCATCAC ATCACCGTGGGCCTAGCCATTGGGGCCGCGTCGGCCATCAC Direct Loss 0.970293021095289 0 0.94967747 0 prediction 0.940586042190579 Functional Loss - TOR1B ENSG00000136816 CDS Human protein_coding chr9:132565593 chr9:132565593 synonymous SNV . 0 21 hm5C_associated_SNPs_47557 0 0 1 0 1 Endoplasmic reticulum 0.500231643921093 0 0.89935494 0.000463287842185078 hm5C_site_2877 DeepMRMD:0.89935494;iRNA_m5C:0.000463287842185078 2878 chr6 28227179 28227179 1 + C A BRCA 28227179 + 28227159 28227199 41 GTATCCCGGTCCAGCTATTCCGAGGACATCGTGGGCTCTCG GTATCCCGGTCCAGCTATTCAGAGGACATCGTGGGCTCTCG Direct Loss 0.970263137755309 0 0.91122437 0 prediction 0.940526275510619 Functional Loss - NKAPL ENSG00000189134 CDS Human protein_coding chr6:28227179 chr6:28227179 synonymous SNV . 0 21 hm5C_associated_SNPs_47558 0 0 1 0 0 exosome 0.500230614451435 0 0.82244874 0.000461228902870037 hm5C_site_2878 DeepMRMD:0.82244874;iRNA_m5C:0.000461228902870037 2879 chr7 134613548 134613548 1 + C T UCEC 134613548 + 134613528 134613568 41 ATGATGAAGAGGAGGCAGCCCGGGAACGGCGCCGCCGAGCC ATGATGAAGAGGAGGCAGCCTGGGAACGGCGCCGCCGAGCC Direct Loss 0.970262252724573 0 0.8617248 0 prediction 0.940524505449146 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134613548 chr7:134613548 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_47559 0 0 1 0 1 Ribosome 0.500231643921092 0 0.7234496 0.000463287842184856 hm5C_site_2879 DeepMRMD:0.7234496;iRNA_m5C:0.000463287842184856 2880 chr9 101602409 101602409 1 + C T UCEC 101602409 + 101602389 101602429 41 GAGGACAGGCCTGGCTTCTTCGGGATGGTGAGTGAGGGTGG GAGGACAGGCCTGGCTTCTTTGGGATGGTGAGTGAGGGTGG Direct Loss 0.970231121570914 0 0.8700966 0 prediction 0.940462243141829 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101602409 chr9:101602409 synonymous SNV . 0 21 hm5C_associated_SNPs_47560 0 0 1 0 1 Ribosome 0.500215098957767 0 0.7401932 0.000430197915533004 hm5C_site_2880 DeepMRMD:0.7401932;iRNA_m5C:0.000430197915533004 2881 chr3 10219626 10219626 1 + C T UCEC 10219626 + 10219606 10219646 41 TGCTGTGGTGGTGGGGCATGCGGCAGGCCACCGTCCAGCAA TGCTGTGGTGGTGGGGCATGTGGCAGGCCACCGTCCAGCAA Direct Loss 0.970220388246081 0 0.8998384 0 prediction 0.940440776492162 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10219626 chr3:10219626 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_47561 0 0 1 0 1 Nucleus 0.500231637582287 0 0.7996768 0.000463275164574783 hm5C_site_2881 DeepMRMD:0.7996768;iRNA_m5C:0.000463275164574783 2882 chr1 16378708 16378708 1 + C T HNSC 16378708 + 16378688 16378728 41 TGCAGGGGCTGCAGCCTTCTCAGGGGCTGTGACCCACACCA TGCAGGGGCTGCAGCCTTCTTAGGGGCTGTGACCCACACCA Direct Loss 0.970201085391803 0 0.9664159 0 prediction 0.940402170783606 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16378708 chr1:16378708 nonsynonymous SNV 0.990 5 21 hm5C_associated_SNPs_47562 0 0 0 0 1 exosome 0.500231643921092 0 0.9328318 0.000463287842184856 hm5C_site_2882 DeepMRMD:0.9328318;iRNA_m5C:0.000463287842184856 2883 chr11 113650550 113650550 1 + C T UCEC 113650550 + 113650530 113650570 41 TTCCGTGCAAAAGTCCAGCTCGGGGGGCTACTTCTCTCCCT TTCCGTGCAAAAGTCCAGCTTGGGGGGCTACTTCTCTCCCT Direct Loss 0.970195207155348 0 0.9636222 0 prediction 0.940390414310697 Functional Loss - CLDN25 ENSG00000228607 CDS Human protein_coding chr11:113650550 chr11:113650550 synonymous SNV . 0 21 hm5C_associated_SNPs_47563 0 0 0 0 0 unknown 0.500231643996149 0 0.9272444 0.000463287992297445 hm5C_site_2883 DeepMRMD:0.9272444;iRNA_m5C:0.000463287992297445 2884 chr16 55703563 55703563 1 + C T READ 55703563 + 55703543 55703583 41 TGGCTCTGGGACAGTACAACCGGGAGGGGGCTGCCACCGTT TGGCTCTGGGACAGTACAACTGGGAGGGGGCTGCCACCGTT Direct Loss 0.970193050040009 0 0.9087085 0 prediction 0.940386100080018 Functional Loss - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55703563 chr16:55703563 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47564 0 0 0 0 2 exosome 0.500231642866159 0 0.817417 0.000463285732317686 hm5C_site_2884 DeepMRMD:0.817417;iRNA_m5C:0.000463285732317686 2885 chr12 118577301 118577301 1 + C A HNSC 118577301 + 118577281 118577321 41 AACATGAAGGGCAATGACATCAGCAGTGGCACAGTCCTCTC AACATGAAGGGCAATGACATAAGCAGTGGCACAGTCCTCTC Direct Loss 0.970170445050231 0 0.43033987 0 prediction 0.940340890100463 Functional Loss - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118577301 chr12:118577301 synonymous SNV . 0 21 hm5C_associated_SNPs_47565 0 0 1 0 2 Ribosome 0.500231642743017 0 0 0.000463285486034914 hm5C_site_2885 DeepMRMD:0;iRNA_m5C:0.000463285486034914 2886 chr14 100402444 100402444 1 + C T UCEC 100402444 + 100402424 100402464 41 TGACAACGGGAGGAAGTACACGCGAGTGGGCAAGTGCTCGG TGACAACGGGAGGAAGTACATGCGAGTGGGCAAGTGCTCGG Direct Loss 0.970148036510959 0 0.6682222 0 prediction 0.940296073021917 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100402444 chr14:100402444 nonsynonymous SNV 0.013 1 21 hm5C_associated_SNPs_47566 0 0 0 0 2 Nucleus 0.500231643921092 0 0.3364444 0.000463287842184856 hm5C_site_2886 DeepMRMD:0.3364444;iRNA_m5C:0.000463287842184856 2887 chr1 153633723 153633723 1 + C T UCEC 153633723 + 153633703 153633743 41 GTTGCCAAGGAAACAGCCCGCAGGAGAGCAATGCTGGATTC GTTGCCAAGGAAACAGCCCGTAGGAGAGCAATGCTGGATTC Direct Loss 0.970096598347583 0 0.8784754 0 prediction 0.940193196695166 Functional Loss - SNAPIN ENSG00000143553 CDS Human protein_coding chr1:153633723 chr1:153633723 synonymous SNV . 0 21 hm5C_associated_SNPs_47567 0 0 1 0 1 Cytosol 0.500231645387902 0 0.7569508 0.00046329077580487 hm5C_site_2887 DeepMRMD:0.7569508;iRNA_m5C:0.00046329077580487 2888 chr15 75185571 75185571 1 + C T BLCA 75185571 + 75185551 75185591 41 CCCAGGCTGTGGCCTCCTCTCTGCAGAGCTGTTTCTCCCAC CCCAGGCTGTGGCCTCCTCTTTGCAGAGCTGTTTCTCCCAC Direct Loss 0.970079068449433 0 0.22425348 0 prediction 0.940158136898867 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75185571 chr15:75185571 synonymous SNV . 0 21 hm5C_associated_SNPs_47568 0 0 1 0 2 Ribosome 0.500231643922411 0 0 0.000463287844821414 hm5C_site_2888 DeepMRMD:0;iRNA_m5C:0.000463287844821414 2889 chr19 9204181 9204181 1 + C T rs111953002 9204181 + 9204161 9204201 41 ATGCTGGTGAGCCTTCAAACCGGGAGCAAGGCCATCTCTTA ATGCTGGTGAGCCTTCAAACTGGGAGCAAGGCCATCTCTTA Direct Loss 0.97007891729139 0 0.9010322 0 prediction 0.94015783458278 Functional Loss - OR1M1 ENSG00000170929 CDS Human protein_coding chr19:9204181 chr19:9204181 synonymous SNV . 0 21 hm5C_associated_SNPs_47569 0 0 0 0 0 unknown 0.500231643966773 0 0.8020644 0.000463287933545775 hm5C_site_2889 DeepMRMD:0.8020644;iRNA_m5C:0.000463287933545775 2890 chr15 72954808 72954808 1 + C T HNSC 72954808 + 72954788 72954828 41 AGCAGGAGGTGCAGAGAGTGCGGGAGCAGGAGAGACTGTGT AGCAGGAGGTGCAGAGAGTGTGGGAGCAGGAGAGACTGTGT Direct Loss 0.970053446982151 0 0.8738263 0 prediction 0.940106893964302 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72954808 chr15:72954808 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47570 0 0 0 0 0 exosome 0.500231640224874 0 0.7476526 0.000463280449747083 hm5C_site_2890 DeepMRMD:0.7476526;iRNA_m5C:0.000463280449747083 2891 chr2 119739064 119739064 1 + C T SKCM 119739064 + 119739044 119739084 41 CAGGGGAGTAAAGGTGACTTCGGGAGGCCAGGCCCACCAGG CAGGGGAGTAAAGGTGACTTTGGGAGGCCAGGCCCACCAGG Direct Loss 0.970041157477435 0 0.9533216 0 prediction 0.94008231495487 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739064 chr2:119739064 synonymous SNV . 0 21 hm5C_associated_SNPs_47571 0 0 0 0 2 exosome 0.500231643921092 0 0.9066432 0.000463287842184856 hm5C_site_2891 DeepMRMD:0.9066432;iRNA_m5C:0.000463287842184856 2892 chr7 53103673 53103673 1 + C A rs1184320 53103673 + 53103653 53103693 41 TGGAGGCGCCCTGCCCTTCCCGGGGAGACCGCTCTGGGGCG TGGAGGCGCCCTGCCCTTCCAGGGGAGACCGCTCTGGGGCG Direct Loss 0.970030230528559 0 0.95224464 0 prediction 0.940060461057118 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103673 chr7:53103673 synonymous SNV . 0 21 hm5C_associated_SNPs_47572 0 0 0 0 0 unknown 0.500231643921092 0 0.90448928 0.000463287842184856 hm5C_site_2892 DeepMRMD:0.90448928;iRNA_m5C:0.000463287842184856 2893 chr1 155533168 155533168 1 + C T rs571018572 155533168 + 155533148 155533188 41 GTACCGCTGAGGGAAAGGAGCGGGACTCCGGACCTCCAGGA GTACCGCTGAGGGAAAGGAGTGGGACTCCGGACCTCCAGGA Direct Loss 0.970020849183232 0 0.9115498 0 prediction 0.940041698366465 Functional Loss - ASH1L-AS1 ENSG00000235919 ncRNA_exonic Human antisense chr1:155533168 chr1:155533168 . . 0 21 hm5C_associated_SNPs_47573 0 0 0 0 0 unknown 0.500231643921092 0 0.8230996 0.000463287842184856 hm5C_site_2893 DeepMRMD:0.8230996;iRNA_m5C:0.000463287842184856 2894 chr12 6554653 6554653 1 + C T UCEC 6554653 + 6554633 6554673 41 TCAGTGTGATCCTTGCATACCGGGGGTCTCCTTCTCTCCTG TCAGTGTGATCCTTGCATACTGGGGGTCTCCTTCTCTCCTG Direct Loss 0.970013461503128 0 0.93322194 0 prediction 0.940026923006256 Functional Loss - CD27 ENSG00000139193 CDS Human protein_coding chr12:6554653 chr12:6554653 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_47574 0 0 0 0 2 exosome 0.500231644329614 0 0.86644388 0.00046328865922729 hm5C_site_2894 DeepMRMD:0.86644388;iRNA_m5C:0.00046328865922729 2895 chr3 119445030 119445030 1 + C T LUAD 119445030 + 119445010 119445050 41 TCCTGCAGGTCGGGGTCTCCCAGCAGGACAAGCTGAGGTGG TCCTGCAGGTCGGGGTCTCCTAGCAGGACAAGCTGAGGTGG Direct Loss 0.970005150145327 0 0.7232758 0 prediction 0.940010300290655 Functional Loss - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119445030 chr3:119445030 nonsynonymous SNV 0.946 4 21 hm5C_associated_SNPs_47575 0 0 0 0 1 exosome 0.500231643921097 0 0.4465516 0.000463287842194404 hm5C_site_2895 DeepMRMD:0.4465516;iRNA_m5C:0.000463287842194404 2896 chr16 86613189 86613189 1 + C A UCEC 86613189 + 86613169 86613209 41 ACTCCTAGGGGGTGCCAAGCCTGGGCCCGGCGGCCGTCTGG ACTCCTAGGGGGTGCCAAGCATGGGCCCGGCGGCCGTCTGG Direct Loss 0.969999383131898 0 0.8959619 0 prediction 0.939998766263796 Functional Loss - FOXL1 ENSG00000176678 CDS Human protein_coding chr16:86613189 chr16:86613189 nonsynonymous SNV 0.073 1 21 hm5C_associated_SNPs_47576 0 0 0 0 0 exosome 0.500231643921092 0 0.7919238 0.000463287842184412 hm5C_site_2896 DeepMRMD:0.7919238;iRNA_m5C:0.000463287842184412 2897 chr19 55106616 55106616 1 + C T rs138781448 55106616 + 55106596 55106636 41 ACCCAGCCCTGTGGTGACCTCAGGAGGGAACGTGACCCTCC ACCCAGCCCTGTGGTGACCTTAGGAGGGAACGTGACCCTCC Direct Loss 0.969995049209458 0 0.94612455 0 prediction 0.939990098418916 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106616 chr19:55106616 nonsynonymous SNV 0.016 0 21 hm5C_associated_SNPs_47577 0 0 0 0 1 exosome 0.500231643937439 0 0.8922491 0.000463287874878482 hm5C_site_2897 DeepMRMD:0.8922491;iRNA_m5C:0.000463287874878482 2898 chr2 233899296 233899296 1 + C A PAAD 233899296 + 233899276 233899316 41 GAGTGCCAGGTGGCCGAAGTCGAGACTGGGGAGCAGAGGGT GAGTGCCAGGTGGCCGAAGTAGAGACTGGGGAGCAGAGGGT Direct Loss 0.969992044577894 0 0.9072672 0 prediction 0.939984089155788 Functional Loss - NEU2 ENSG00000115488 CDS Human protein_coding chr2:233899296 chr2:233899296 synonymous SNV . 0 21 hm5C_associated_SNPs_47578 0 0 0 0 0 exosome 0.500231643969185 0 0.8145344 0.000463287938370582 hm5C_site_2898 DeepMRMD:0.8145344;iRNA_m5C:0.000463287938370582 2899 chr13 114469185 114469185 1 + C T UCEC 114469185 + 114469165 114469205 41 GTCGGGCTGGCTGCCACCACCAGGACGGAGAATGTGACCGT GTCGGGCTGGCTGCCACCACTAGGACGGAGAATGTGACCGT Direct Loss 0.969991763427034 0 0.9234885 0 prediction 0.939983526854067 Functional Loss - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114469185 chr13:114469185 synonymous SNV . 0 21 hm5C_associated_SNPs_47579 0 0 0 0 2 exosome 0.500231644476401 0 0.846977 0.000463288952802898 hm5C_site_2899 DeepMRMD:0.846977;iRNA_m5C:0.000463288952802898 2900 chr7 100803860 100803860 1 + C T rs372487377 100803860 + 100803840 100803880 41 TGGCATAGCCCCTGCTGGGCCGGGGTGTGGCGATGGGGTCC TGGCATAGCCCCTGCTGGGCTGGGGTGTGGCGATGGGGTCC Direct Loss 0.969964245063261 0 0.85479903 0 prediction 0.939928490126521 Functional Loss - AP1S1 ENSG00000106367 UTR3 Human protein_coding chr7:100803860 chr7:100803860 . . 0 21 hm5C_associated_SNPs_47580 0 0 1 0 1 Ribosome 0.500231643921092 0 0.70959806 0.000463287842184856 hm5C_site_2900 DeepMRMD:0.70959806;iRNA_m5C:0.000463287842184856 2901 chr4 56290754 56290754 1 + C T COAD 56290754 + 56290734 56290774 41 TGTGGGGCACTGCCTGTGCACGGGATTGGCAGTAATTGGAG TGTGGGGCACTGCCTGTGCATGGGATTGGCAGTAATTGGAG Direct Loss 0.969955928317845 0 0.8452783 0 prediction 0.93991185663569 Functional Loss - TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56290754 chr4:56290754 nonsynonymous SNV 0.386 5 21 hm5C_associated_SNPs_47581 0 0 1 0 2 Ribosome 0.500231643921092 0 0.6905566 0.000463287842184856 hm5C_site_2901 DeepMRMD:0.6905566;iRNA_m5C:0.000463287842184856 2902 chr6 74104763 74104763 1 + C T OV 74104763 + 74104743 74104783 41 GGTCCTGAGGGATATAGTGTCGGCAGAGGTGGTCGCTGGAG GGTCCTGAGGGATATAGTGTTGGCAGAGGTGGTCGCTGGAG Direct Loss 0.969941704506972 0 0.8819647 0 prediction 0.939883409013944 Functional Loss - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74104763 chr6:74104763 synonymous SNV . 0 21 hm5C_associated_SNPs_47582 0 0 0 0 0 exosome 0.500231653644342 0 0.7639294 0.000463307288684156 hm5C_site_2902 DeepMRMD:0.7639294;iRNA_m5C:0.000463307288684156 2903 chr5 72419638 72419638 1 + C T UCEC 72419638 + 72419618 72419658 41 TGGGCGCAGGAACCGCTAAACGAGACAGACACTGGCGACTC TGGGCGCAGGAACCGCTAAATGAGACAGACACTGGCGACTC Direct Loss 0.969939984964852 0 0.83327717 0 prediction 0.939879969929704 Functional Loss - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72419638 chr5:72419638 synonymous SNV . 0 21 hm5C_associated_SNPs_47583 0 0 0 0 0 Ribosome 0.500231643921093 0 0.66655434 0.000463287842186633 hm5C_site_2903 DeepMRMD:0.66655434;iRNA_m5C:0.000463287842186633 2904 chr13 114290941 114290941 1 + C T UCEC 114290941 + 114290921 114290961 41 CATGGCTTGCGGGCTGGAGTCGGGGAGCTGCTCTGCCGAAG CATGGCTTGCGGGCTGGAGTTGGGGAGCTGCTCTGCCGAAG Direct Loss 0.96993916384082 0 0.93483436 0 prediction 0.93987832768164 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290941 chr13:114290941 nonsynonymous SNV 0.222 3 21 hm5C_associated_SNPs_47584 0 0 1 0 2 Cytosol 0.500231671886503 0 0.86966872 0.00046334377300572 hm5C_site_2904 DeepMRMD:0.86966872;iRNA_m5C:0.00046334377300572 2905 chr14 52471323 52471323 1 + C T rs192664435 52471323 + 52471303 52471343 41 AAATCAAAATGTCACATTCTCGGGGGAGGAAGCCCAGAAAA AAATCAAAATGTCACATTCTTGGGGGAGGAAGCCCAGAAAA Direct Loss 0.969931537858564 0 0.9556433 0 prediction 0.939863075717129 Functional Loss - C14orf166 ENSG00000087302 UTR3 Human protein_coding chr14:52471323 chr14:52471323 . . 0 21 hm5C_associated_SNPs_47585 0 0 1 0 0 Ribosome 0.500231643921092 0 0.9112866 0.000463287842184856 hm5C_site_2905 DeepMRMD:0.9112866;iRNA_m5C:0.000463287842184856 2906 chr5 140503797 140503797 1 + C T MESO 140503797 + 140503777 140503817 41 GGGCATCTGGTGGACGTAAGCGGCACCGGGACCCTGTCCCA GGGCATCTGGTGGACGTAAGTGGCACCGGGACCCTGTCCCA Direct Loss 0.969919947237718 0 0.70536345 0 prediction 0.939839894475436 Functional Loss - PCDHB4 ENSG00000081818 CDS Human protein_coding chr5:140503797 chr5:140503797 synonymous SNV . 0 21 hm5C_associated_SNPs_47586 0 0 0 0 0 exosome 0.500231643921086 0 0.4107269 0.0004632878421722 hm5C_site_2906 DeepMRMD:0.4107269;iRNA_m5C:0.0004632878421722 2907 chr1 32671349 32671349 1 + C A UCEC 32671349 + 32671329 32671369 41 GGGGGCGGGCGCGGGGTTCACAGGATTTTTCCTTTAGGGAA GGGGGCGGGCGCGGGGTTCAAAGGATTTTTCCTTTAGGGAA Direct Loss 0.969916633569873 0 0.9107542 0 prediction 0.939833267139747 Functional Loss - IQCC ENSG00000160051 CDS Human protein_coding chr1:32671349 chr1:32671349 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_47587 0 0 1 0 0 chromatin 0.500231643921092 0 0.8215084 0.000463287842184856 hm5C_site_2907 DeepMRMD:0.8215084;iRNA_m5C:0.000463287842184856 2908 chrX 129546493 129546493 1 + C T LUAD 129546493 + 129546473 129546513 41 GCAAGAACTCAGAGAGAGCTCAGAAGTCAGAGCCCAGGGAG GCAAGAACTCAGAGAGAGCTTAGAAGTCAGAGCCCAGGGAG Direct Loss 0.969883862734091 0 0.2980836 0 prediction 0.939767725468181 Functional Loss - RBMX2 ENSG00000134597 CDS Human protein_coding chrX:129546493 chrX:129546493 stopgain 0.079 0 21 hm5C_associated_SNPs_47588 0 0 1 0 0 exosome 0.500231643915726 0 0 0.00046328783145233 hm5C_site_2908 DeepMRMD:0;iRNA_m5C:0.00046328783145233 2909 chr4 25677972 25677972 1 + C T COAD 25677972 + 25677952 25677992 41 TGGCGGGTGCTGGTTGGTGTCGGGGTTCCCGTCGTCTTCAT TGGCGGGTGCTGGTTGGTGTTGGGGTTCCCGTCGTCTTCAT Direct Loss 0.969873515122565 0 0.94005454 0 prediction 0.93974703024513 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25677972 chr4:25677972 synonymous SNV . 0 21 hm5C_associated_SNPs_47589 0 0 0 0 0 nucleus 0.500231643977296 0 0.88010908 0.000463287954591607 hm5C_site_2909 DeepMRMD:0.88010908;iRNA_m5C:0.000463287954591607 2910 chr6 3017194 3017194 1 + C T UCEC 3017194 + 3017174 3017214 41 GACAGGAGTCAATGGAGATTCTCGATACTTCCTGTGGCCAC GACAGGAGTCAATGGAGATTTTCGATACTTCCTGTGGCCAC Direct Loss 0.969855149497673 0 0.91008085 0 prediction 0.939710298995346 Functional Loss - NQO2 ENSG00000124588 CDS Human protein_coding chr6:3017194 chr6:3017194 nonsynonymous SNV 0.374 0 21 hm5C_associated_SNPs_47590 0 0 1 0 1 Ribosome 0.500231643921101 0 0.8201617 0.000463287842202842 hm5C_site_2910 DeepMRMD:0.8201617;iRNA_m5C:0.000463287842202842 2911 chr10 91597560 91597560 1 + C T rs147841810 91597560 + 91597540 91597580 41 ACCCGGTTGGGCCGCATTTCCGGGGCCGTCACCTGTCGGGC ACCCGGTTGGGCCGCATTTCTGGGGCCGTCACCTGTCGGGC Direct Loss 0.96983045077481 0 0.9654417 0 prediction 0.93966090154962 Functional Loss - LINC00865 ENSG00000232229;ENSG00000270670 ncRNA_exonic Human other chr10:91597560 chr10:91597560 . . 0 21 hm5C_associated_SNPs_47591 0 0 0 0 0 unknown 0.50023164861378 0 0.9308834 0.000463297227560888 hm5C_site_2911 DeepMRMD:0.9308834;iRNA_m5C:0.000463297227560888 2912 chr5 148725156 148725156 1 + C A UCEC 148725156 + 148725136 148725176 41 CGGGTGCAGCGCCTACTGGCCTGGAGTGCCGCGTGGGAGAG CGGGTGCAGCGCCTACTGGCATGGAGTGCCGCGTGGGAGAG Direct Loss 0.969823562748665 0 0.2529443 0 prediction 0.93964712549733 Functional Loss - GRPEL2 ENSG00000164284 CDS Human protein_coding chr5:148725156 chr5:148725156 synonymous SNV . 0 21 hm5C_associated_SNPs_47592 0 0 1 0 1 Cytosol 0.500231671423093 0 0 0.000463342846186654 hm5C_site_2912 DeepMRMD:0;iRNA_m5C:0.000463342846186654 2913 chr17 38100794 38100794 1 + C T rs149957840 38100794 + 38100774 38100814 41 GGAGGAAGAGCTGTGTGGGTCGGGGTGGGGTGGGGCCCGGA GGAGGAAGAGCTGTGTGGGTTGGGGTGGGGTGGGGCCCGGA Direct Loss 0.969816543176179 0 0.923696 0 prediction 0.939633086352358 Functional Loss - LRRC3C ENSG00000204913 CDS Human protein_coding chr17:38100794 chr17:38100794 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_47593 0 0 0 0 0 exosome 0.500231643923118 0 0.847392 0.000463287846236726 hm5C_site_2913 DeepMRMD:0.847392;iRNA_m5C:0.000463287846236726 2914 chr19 54140031 54140031 1 + C T COAD 54140031 + 54140011 54140051 41 CCCGATCGGCCTGGTGTACACGGGTCATCGAGTCCCCTCAT CCCGATCGGCCTGGTGTACATGGGTCATCGAGTCCCCTCAT Direct Loss 0.96980272514845 0 0.36722225 0 prediction 0.939605450296901 Functional Loss - DPRX ENSG00000204595 CDS Human protein_coding chr19:54140031 chr19:54140031 nonsynonymous SNV 0.000 3 21 hm5C_associated_SNPs_47594 0 0 0 0 0 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_2914 DeepMRMD:0;iRNA_m5C:0.000463287842184856 2915 chr1 227935805 227935805 1 + C T UCEC 227935805 + 227935785 227935825 41 GACCCGGGGCGAGGAGCTGACGGGACTCATGGCTGGATCCC GACCCGGGGCGAGGAGCTGATGGGACTCATGGCTGGATCCC Direct Loss 0.969795198155313 0 0.8428881 0 prediction 0.939590396310625 Functional Loss - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227935805 chr1:227935805 nonsynonymous SNV 0.013 0 21 hm5C_associated_SNPs_47595 0 0 1 0 0 Ribosome 0.500231657727022 0 0.6857762 0.000463315454043434 hm5C_site_2915 DeepMRMD:0.6857762;iRNA_m5C:0.000463315454043434 2916 chr1 64059644 64059644 1 + C G rs217490 64059644 + 64059624 64059664 41 TCGCCTGACTCCCGGGGCGCCGGGAGGTGCGGGCGCGGAGC TCGCCTGACTCCCGGGGCGCGGGGAGGTGCGGGCGCGGAGC Direct Loss 0.96975385730256 0 0.9231168 0 prediction 0.93950771460512 Functional Loss - PGM1 ENSG00000079739 UTR5 Human protein_coding chr1:64059644 chr1:64059644 . . 0 21 hm5C_associated_SNPs_47596 0 0 0 0 0 Ribosome 0.500231643921099 0 0.8462336 0.000463287842198401 hm5C_site_2916 DeepMRMD:0.8462336;iRNA_m5C:0.000463287842198401 2917 chr12 5154984 5154984 1 + C T STAD 5154984 + 5154964 5155004 41 GGAGTCCAGCGGAAGGTCAGCGGGAGCAGGGGATCCTTCTG GGAGTCCAGCGGAAGGTCAGTGGGAGCAGGGGATCCTTCTG Direct Loss 0.969748728649732 0 0.9074192 0 prediction 0.939497457299464 Functional Loss - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5154984 chr12:5154984 synonymous SNV . 0 21 hm5C_associated_SNPs_47597 0 0 0 0 0 exosome 0.500231644084642 0 0.8148384 0.000463288169284537 hm5C_site_2917 DeepMRMD:0.8148384;iRNA_m5C:0.000463288169284537 2918 chr6 27783160 27783160 1 + C G LUSC 27783160 + 27783140 27783180 41 TTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCCGTCAC TTGGCCAAGCACGCCGTGTCGGAGGGCACCAAGGCCGTCAC Direct Loss 0.969724722605132 0 0.9068239 0 prediction 0.939449445210264 Functional Loss - HIST1H2BM ENSG00000196374 CDS Human other chr6:27783160 chr6:27783160 synonymous SNV . 0 21 hm5C_associated_SNPs_47598 0 0 1 0 0 nucleus 0.500231668009288 0 0.8136478 0.000463336018575067 hm5C_site_2918 DeepMRMD:0.8136478;iRNA_m5C:0.000463336018575067 2919 chr19 58565264 58565264 1 + C T STAD 58565264 + 58565244 58565284 41 CCCCCCGGAGCAAGGGCCCCCGGGAGTCCGTCCCACCCAGG CCCCCCGGAGCAAGGGCCCCTGGGAGTCCGTCCCACCCAGG Direct Loss 0.969704677374867 0 0.9339559 0 prediction 0.939409354749735 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58565264 chr19:58565264 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_47599 0 0 0 0 0 exosome 0.500231643921092 0 0.8679118 0.000463287842184856 hm5C_site_2919 DeepMRMD:0.8679118;iRNA_m5C:0.000463287842184856 2920 chr16 77822729 77822729 1 + C T COAD 77822729 + 77822709 77822749 41 GCGGTGGTGCTGGCTGGCTTCGGGGGGCTCAACAAGCTGCG GCGGTGGTGCTGGCTGGCTTTGGGGGGCTCAACAAGCTGCG Direct Loss 0.969689369901816 0 0.93307483 0 prediction 0.939378739803633 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77822729 chr16:77822729 synonymous SNV . 0 21 hm5C_associated_SNPs_47600 0 0 0 0 1 Endoplasmic reticulum 0.500231646989905 0 0.86614966 0.000463293979810819 hm5C_site_2920 DeepMRMD:0.86614966;iRNA_m5C:0.000463293979810819 Systolic blood pressure 2921 chr5 74065137 74065137 1 + C T BLCA 74065137 + 74065117 74065157 41 GCTGGACAGAGAGGGACAATCTCGAGCTAAAGTACTTTCCA GCTGGACAGAGAGGGACAATTTCGAGCTAAAGTACTTTCCA Direct Loss 0.969676902495501 0 0.7351163 0 prediction 0.939353804991003 Functional Loss - NSA2 ENSG00000164346 CDS Human protein_coding chr5:74065137 chr5:74065137 nonsynonymous SNV 0.851 1 21 hm5C_associated_SNPs_47601 0 0 1 0 2 Cytosol 0.500231652395003 0 0.4702326 0.000463304790006891 hm5C_site_2921 DeepMRMD:0.4702326;iRNA_m5C:0.000463304790006891 2922 chr9 35853728 35853728 1 + C T BLCA 35853728 + 35853708 35853748 41 GACTGACCACGGGGTCCCATCTGGAGCCCGGGCCCGGGGCT GACTGACCACGGGGTCCCATTTGGAGCCCGGGCCCGGGGCT Direct Loss 0.969676082962333 0 0.7123867 0 prediction 0.939352165924665 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35853728 chr9:35853728 nonsynonymous SNV 0.868 1 21 hm5C_associated_SNPs_47602 0 0 0 0 0 cytosol 0.500231661472288 0 0.4247734 0.000463322944576738 hm5C_site_2922 DeepMRMD:0.4247734;iRNA_m5C:0.000463322944576738 2923 chr1 152883228 152883228 1 + C T UCEC 152883228 + 152883208 152883248 41 AGCTGAAGCACCTGGAGCAGCAGGAGGGGCAGCCTAAGCAT AGCTGAAGCACCTGGAGCAGTAGGAGGGGCAGCCTAAGCAT Direct Loss 0.969671632922029 0 0.8516131 0 prediction 0.939343265844058 Functional Loss - IVL ENSG00000163207 CDS Human protein_coding chr1:152883228 chr1:152883228 stopgain 0.002 0 21 hm5C_associated_SNPs_47603 0 0 0 0 0 unknown 0.500231643920366 0 0.7032262 0.000463287840731352 hm5C_site_2923 DeepMRMD:0.7032262;iRNA_m5C:0.000463287840731352 2924 chr2 232262911 232262911 1 + C T HNSC 232262911 + 232262891 232262931 41 GCCAGACCTGGGGCCGCGAGCGGCAGTCCGCGGGTGGGGGC GCCAGACCTGGGGCCGCGAGTGGCAGTCCGCGGGTGGGGGC Direct Loss 0.969649712675739 0 0.915746 0 prediction 0.939299425351478 Functional Loss - B3GNT7 ENSG00000156966 CDS Human protein_coding chr2:232262911 chr2:232262911 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_47604 0 0 0 0 0 exosome 0.50023164396149 0 0.831492 0.000463287922980893 hm5C_site_2924 DeepMRMD:0.831492;iRNA_m5C:0.000463287922980893 2925 chr5 76326729 76326729 1 + C T BLCA 76326729 + 76326709 76326749 41 AAGCGGCAGGTGCGGGAGATCGAGAAGCTGCTGCATCACAC AAGCGGCAGGTGCGGGAGATTGAGAAGCTGCTGCATCACAC Direct Loss 0.969616698408893 0 0.9096962 0 prediction 0.939233396817785 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76326729 chr5:76326729 synonymous SNV . 0 21 hm5C_associated_SNPs_47605 0 0 0 0 1 Ribosome 0.500231649096466 0 0.8193924 0.000463298192932227 hm5C_site_2925 DeepMRMD:0.8193924;iRNA_m5C:0.000463298192932227 2926 chr22 39884906 39884906 1 + C G rs202126201 39884906 + 39884886 39884926 41 GGGTGGCGCCACAGGGGTCCCGAGGGAAGGCCGCCCGCCCG GGGTGGCGCCACAGGGGTCCGGAGGGAAGGCCGCCCGCCCG Direct Loss 0.969611158395225 0 0.9053849 0 prediction 0.93922231679045 Functional Loss - MGAT3 ENSG00000128268 CDS Human protein_coding chr22:39884906 chr22:39884906 synonymous SNV . 0 21 hm5C_associated_SNPs_47606 0 0 0 0 0 Endoplasmic reticulum 0.500231643921009 0 0.8107698 0.000463287842018767 hm5C_site_2926 DeepMRMD:0.8107698;iRNA_m5C:0.000463287842018767 2927 chr15 29034097 29034097 1 + C A rs80308609 29034097 + 29034077 29034117 41 CGGGCAGCCGCCGGCCACTTCAGGGGGGCCCGCCACTTCAG CGGGCAGCCGCCGGCCACTTAAGGGGGGCCCGCCACTTCAG Direct Loss 0.969608049748562 0 0.93974125 0 prediction 0.939216099497124 Functional Loss - LOC100289656 ENSG00000232431 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:29034097 chr15:29034097 . . 0 21 hm5C_associated_SNPs_47607 0 0 0 0 0 unknown 0.500231643921092 0 0.8794825 0.000463287842184856 hm5C_site_2927 DeepMRMD:0.8794825;iRNA_m5C:0.000463287842184856 2928 chr19 808629 808629 1 + C T STAD 808629 + 808609 808649 41 ACCAGAACGTGCAGCTGCCCCGCGAGGGCCAGGAGGACCAG ACCAGAACGTGCAGCTGCCCTGCGAGGGCCAGGAGGACCAG Direct Loss 0.969594591383018 0 0.50358313 0 prediction 0.939189182766036 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808629 chr19:808629 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_47608 0 0 1 0 1 Cytosol 0.500231643910723 0 0.00716625999999998 0.000463287821445224 hm5C_site_2928 DeepMRMD:0.00716625999999998;iRNA_m5C:0.000463287821445224 2929 chr19 52327441 52327441 1 + C G rs61736493 52327441 + 52327421 52327461 41 TCTGGCCAAGAGGGTGATGACGGGACTCTGGATTTTCACCA TCTGGCCAAGAGGGTGATGAGGGGACTCTGGATTTTCACCA Direct Loss 0.969580838676546 0 0.9074247 0 prediction 0.939161677353092 Functional Loss - FPR3 ENSG00000187474 CDS Human protein_coding chr19:52327441 chr19:52327441 nonsynonymous SNV 0.020 1 21 hm5C_associated_SNPs_47609 0 0 0 0 0 cytosol 0.500231643973602 0 0.8148494 0.000463287947204627 hm5C_site_2929 DeepMRMD:0.8148494;iRNA_m5C:0.000463287947204627 2930 chr19 57883207 57883207 1 + C G LUSC 57883207 + 57883187 57883227 41 CCCAGGAGGAGTGGGGGCATCTCGATGAGGCTCAGAGATTG CCCAGGAGGAGTGGGGGCATGTCGATGAGGCTCAGAGATTG Direct Loss 0.969551457085359 0 0.9104708 0 prediction 0.939102914170719 Functional Loss - ZNF547 ENSG00000152433;ENSG00000268133 CDS Human other chr19:57883207 chr19:57883207 nonsynonymous SNV 0.970 3 21 hm5C_associated_SNPs_47610 0 0 0 0 1 exosome 0.500231882021127 0 0.8209416 0.000463764042253345 hm5C_site_2930 DeepMRMD:0.8209416;iRNA_m5C:0.000463764042253345 2931 chr20 4705236 4705236 1 + C G LUAD 4705236 + 4705216 4705256 41 TGGTGGTGGCTGGCCACTGTCTGCATGCTGCTCTTCAGCCA TGGTGGTGGCTGGCCACTGTGTGCATGCTGCTCTTCAGCCA Direct Loss 0.969550489440135 0 0.34567872 0 prediction 0.93910097888027 Functional Loss - PRND ENSG00000171864 CDS Human protein_coding chr20:4705236 chr20:4705236 synonymous SNV . 0 21 hm5C_associated_SNPs_47611 0 0 0 0 1 Nucleus 0.500748647991971 0 0 0.00149729598394233 hm5C_site_2931 DeepMRMD:0;iRNA_m5C:0.00149729598394233 2932 chr18 909477 909477 1 + C T HNSC 909477 + 909457 909497 41 GGCGGCGGCGCGGGGGACGACGCGGAGCCGCTCTCCAAGCG GGCGGCGGCGCGGGGGACGATGCGGAGCCGCTCTCCAAGCG Direct Loss 0.969549490228681 0 0.91723084 0 prediction 0.939098980457361 Functional Loss - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:909477 chr18:909477 synonymous SNV . 0 21 hm5C_associated_SNPs_47612 0 0 0 0 1 exosome 0.500231643925302 0 0.83446168 0.000463287850603455 hm5C_site_2932 DeepMRMD:0.83446168;iRNA_m5C:0.000463287850603455 2933 chr3 197687151 197687151 1 + C T BLCA 197687151 + 197687131 197687171 41 GGGCGGAGGAGTGGGTTACTCGGGCTCAGGCCCGGGCCGGA GGGCGGAGGAGTGGGTTACTTGGGCTCAGGCCCGGGCCGGA Direct Loss 0.969536261105219 0 0.90362114 0 prediction 0.939072522210437 Functional Loss - LMLN ENSG00000185621 CDS Human protein_coding chr3:197687151 chr3:197687151 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47613 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0 0.80724228 0.000463287842184856 hm5C_site_2933 DeepMRMD:0.80724228;iRNA_m5C:0.000463287842184856 2934 chr16 723543 723543 1 + C T BLCA 723543 + 723523 723563 41 CGGGGGCTGCTGGGGGTTGTCGGGGCCGCCGTGGCCGCAGT CGGGGGCTGCTGGGGGTTGTTGGGGCCGCCGTGGCCGCAGT Direct Loss 0.969531157430176 0 0.9539249 0 prediction 0.939062314860351 Functional Loss - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:723543 chr16:723543 synonymous SNV . 0 21 hm5C_associated_SNPs_47614 0 0 1 0 1 Ribosome 0.500231643921092 0 0.9078498 0.000463287842184856 hm5C_site_2934 DeepMRMD:0.9078498;iRNA_m5C:0.000463287842184856 2935 chr4 15704793 15704793 1 + C G CESC 15704793 + 15704773 15704813 41 GGCCCAGGGGTGCGCGGCATCGCGGCTGCTCCAGCTGCTGC GGCCCAGGGGTGCGCGGCATGGCGGCTGCTCCAGCTGCTGC Direct Loss 0.969518369340146 0 0.91387594 0 prediction 0.939036738680292 Functional Loss - BST1 ENSG00000109743 CDS Human protein_coding chr4:15704793 chr4:15704793 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_47615 0 0 0 0 0 Nucleus 0.500231643921076 0 0.82775188 0.000463287842152216 hm5C_site_2935 DeepMRMD:0.82775188;iRNA_m5C:0.000463287842152216 2936 chr18 12222924 12222924 1 + C T rs540172575 12222924 + 12222904 12222944 41 GGGAACAGCTGCCGGACTCACCGGAGAGGCCTCCTGGAGCA GGGAACAGCTGCCGGACTCATCGGAGAGGCCTCCTGGAGCA Direct Loss 0.969507161099619 0 0.9168979 0 prediction 0.939014322199238 Functional Loss - C18orf61 ENSG00000267733 ncRNA_exonic Human transcribed_processed_pseudogene chr18:12222924 chr18:12222924 . . 0 21 hm5C_associated_SNPs_47616 0 0 0 0 0 unknown 0.500231643921084 0 0.8337958 0.000463287842168869 hm5C_site_2936 DeepMRMD:0.8337958;iRNA_m5C:0.000463287842168869 2937 chr18 29054174 29054174 1 + C A LUAD 29054174 + 29054154 29054194 41 GCTTGGAGCAGCCACTGAATCTGGAGGTGCTGCAGGCTTTG GCTTGGAGCAGCCACTGAATATGGAGGTGCTGCAGGCTTTG Direct Loss 0.969499892967056 0 0.68528575 0 prediction 0.938999785934111 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29054174 chr18:29054174 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_47617 0 0 0 0 1 Nucleus 0.500231656139425 0 0.3705715 0.000463312278849326 hm5C_site_2937 DeepMRMD:0.3705715;iRNA_m5C:0.000463312278849326 2938 chr11 67258381 67258381 1 + C T UCEC 67258381 + 67258361 67258401 41 CCCTGGCGCCTGTGGTGAGCCGAGAGCTGCAGGCCCTGGAG CCCTGGCGCCTGTGGTGAGCTGAGAGCTGCAGGCCCTGGAG Direct Loss 0.969467827965014 0 0.85270226 0 prediction 0.938935655930028 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67258381 chr11:67258381 stopgain 0.972 0 21 hm5C_associated_SNPs_47618 1 0 1 0 0 Ribosome 0.500231643921092 0 0.70540452 0.000463287842184856 hm5C_site_2938 DeepMRMD:0.70540452;iRNA_m5C:0.000463287842184856 Somatotroph adenoma Somatotroph adenoma 2939 chr7 150417615 150417615 1 + C T COAD 150417615 + 150417595 150417635 41 ACACAGAGAACCGGGCCTTGCGCGAGCTGGTGGCCGAGTGC ACACAGAGAACCGGGCCTTGTGCGAGCTGGTGGCCGAGTGC Direct Loss 0.969443831936665 0 0.8219195 0 prediction 0.93888766387333 Functional Loss - GIMAP1 ENSG00000213203 CDS Human protein_coding chr7:150417615 chr7:150417615 nonsynonymous SNV 0.919 0 21 hm5C_associated_SNPs_47619 0 0 0 0 0 exosome 0.500231643922764 0 0.643839 0.000463287845527516 hm5C_site_2939 DeepMRMD:0.643839;iRNA_m5C:0.000463287845527516 2940 chr10 79814382 79814382 1 + C T rs375150364 79814382 + 79814362 79814402 41 ACTCGAAGGCAAGAGAAAGCCGGGGGGTTGTGTGGCAGGTA ACTCGAAGGCAAGAGAAAGCTGGGGGGTTGTGTGGCAGGTA Direct Loss 0.969443378632279 0 0.90019906 0 prediction 0.938886757264558 Functional Loss - RPS24 ENSG00000138326 CDS Human protein_coding chr10:79814382 chr10:79814382 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47620 0 0 0 0 1 chromatin 0.500231643921093 0 0.80039812 0.000463287842185078 hm5C_site_2940 DeepMRMD:0.80039812;iRNA_m5C:0.000463287842185078 2941 chr15 91489871 91489871 1 + C T rs200344405 91489871 + 91489851 91489891 41 TTTGAGGGCCAAGGGCTGGCCGGGAAGCTACGGGCCATCCA TTTGAGGGCCAAGGGCTGGCTGGGAAGCTACGGGCCATCCA Direct Loss 0.969434281347957 0 0.93053067 0 prediction 0.938868562695914 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91489871 chr15:91489871 synonymous SNV . 0 21 hm5C_associated_SNPs_47621 0 0 1 0 1 Nucleus 0.500231643921125 0 0.86106134 0.000463287842250582 hm5C_site_2941 DeepMRMD:0.86106134;iRNA_m5C:0.000463287842250582 2942 chr12 3121375 3121375 1 + C T SKCM 3121375 + 3121355 3121395 41 TGCTGGCTCGTCGCAAAGCTCGCGAGATCCAGGCCAAGCTA TGCTGGCTCGTCGCAAAGCTTGCGAGATCCAGGCCAAGCTA Direct Loss 0.969426650975704 0 0.90746886 0 prediction 0.938853301951407 Functional Loss - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3121375 chr12:3121375 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_47622 0 0 1 0 2 Cytosol 0.500231640485473 0 0.81493772 0.000463280970946833 hm5C_site_2942 DeepMRMD:0.81493772;iRNA_m5C:0.000463280970946833 2943 chr20 10279979 10279979 1 + C T UCEC 10279979 + 10279959 10279999 41 GAGCAGGTGAGCGGCATCATCGGGAACCTCCGTCACATGGC GAGCAGGTGAGCGGCATCATTGGGAACCTCCGTCACATGGC Direct Loss 0.96940677393666 0 0.9308528 0 prediction 0.93881354787332 Functional Loss - SNAP25 ENSG00000132639 CDS Human protein_coding chr20:10279979 chr20:10279979 synonymous SNV . 0 21 hm5C_associated_SNPs_47623 0 0 0 0 1 Cytosol 0.500231654448406 0 0.8617056 0.000463308896811343 hm5C_site_2943 DeepMRMD:0.8617056;iRNA_m5C:0.000463308896811343 2944 chr20 57597926 57597926 1 + C T rs35505670 57597926 + 57597906 57597946 41 GAGATGATTGGTGAGGAACACGGGATCGACTTGGCTGGGAG GAGATGATTGGTGAGGAACATGGGATCGACTTGGCTGGGAG Direct Loss 0.969403587625194 0 0.90122294 0 prediction 0.938807175250387 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57597926 chr20:57597926 synonymous SNV . 0 21 hm5C_associated_SNPs_47624 0 0 1 0 2 Cytosol 0.500231648068077 0 0.80244588 0.000463296136154367 hm5C_site_2944 DeepMRMD:0.80244588;iRNA_m5C:0.000463296136154367 2945 chr11 124746210 124746210 1 + C A rs560399997 124746210 + 124746190 124746230 41 GCCCGGGCTGGAGGTGGGCGCGGGGCTGGCGGTGCGGCTGG GCCCGGGCTGGAGGTGGGCGAGGGGCTGGCGGTGCGGCTGG Direct Loss 0.969393936785114 0 0.92969924 0 prediction 0.938787873570228 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124746210 chr11:124746210 nonsynonymous SNV 0.044 0 21 hm5C_associated_SNPs_47625 0 0 0 0 0 exosome 0.500231643921086 0 0.85939848 0.000463287842172644 hm5C_site_2945 DeepMRMD:0.85939848;iRNA_m5C:0.000463287842172644 2946 chr1 38027169 38027169 1 + C T SKCM 38027169 + 38027149 38027189 41 CATTGGAAGATGAGTTGATCCGGGAGGTCACCATCAACTGT CATTGGAAGATGAGTTGATCTGGGAGGTCACCATCAACTGT Direct Loss 0.969389677385007 0 0.92039204 0 prediction 0.938779354770013 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38027169 chr1:38027169 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_47626 0 0 0 0 1 Cytosol 0.500231812180013 0 0.84078408 0.000463624360026449 hm5C_site_2946 DeepMRMD:0.84078408;iRNA_m5C:0.000463624360026449 2947 chr2 71212130 71212130 1 + C T rs61732224 71212130 + 71212110 71212150 41 GAGGTGAGGCCTGATGGGCACGGCGGTGCGCGGCTGCACAC GAGGTGAGGCCTGATGGGCATGGCGGTGCGCGGCTGCACAC Direct Loss 0.969389054815 0 0.7813293 0 prediction 0.93877810963 Functional Loss - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71212130 chr2:71212130 synonymous SNV . 0 21 hm5C_associated_SNPs_47627 0 0 0 0 0 exosome 0.5002316446205 0 0.5626586 0.000463289240999032 hm5C_site_2947 DeepMRMD:0.5626586;iRNA_m5C:0.000463289240999032 2948 chr16 56921848 56921848 1 + C T rs150692587 56921848 + 56921828 56921868 41 CCCTGGCAGGCCGCAGGTCTCGGGAGAATGAAGCCCAACAT CCCTGGCAGGCCGCAGGTCTTGGGAGAATGAAGCCCAACAT Direct Loss 0.969383065590357 0 0.948397 0 prediction 0.938766131180714 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56921848 chr16:56921848 synonymous SNV . 0 21 hm5C_associated_SNPs_47628 0 0 0 0 2 nucleus 0.500231643921092 0 0.896794 0.000463287842184856 hm5C_site_2948 DeepMRMD:0.896794;iRNA_m5C:0.000463287842184856 2949 chr11 19735466 19735466 1 + G T LUAD 19735466 - 19735446 19735486 41 ACCGAGCCGCTCTTCCGCAGCGGGAGCCCCTCCCCCGCTGG ACCGAGCCGCTCTTCCGCAGAGGGAGCCCCTCCCCCGCTGG Direct Loss 0.969380615336429 0 0.9031738 0 prediction 0.938761230672859 Functional Loss - NAV2 ENSG00000166833 CDS Human protein_coding chr11:19735466 chr11:19735466 synonymous SNV . 0 21 hm5C_associated_SNPs_47629 0 0 0 0 0 Nucleus 0.500231643920543 0 0.8063476 0.000463287841085958 hm5C_site_2949 DeepMRMD:0.8063476;iRNA_m5C:0.000463287841085958 2950 chr14 31344034 31344034 1 + C G rs530652156 31344034 + 31344014 31344054 41 TCTCTCCTCTGCGCCGCGCCCGGGGATCCGAAGGGTGCGGG TCTCTCCTCTGCGCCGCGCCGGGGGATCCGAAGGGTGCGGG Direct Loss 0.969379599742343 0 0.9305508 0 prediction 0.938759199484686 Functional Loss - COCH ENSG00000100473 UTR5 Human protein_coding chr14:31344034 chr14:31344034 . . 0 21 hm5C_associated_SNPs_47630 0 0 1 0 0 Cytosol 0.500231643724217 0 0.8611016 0.000463287448434269 hm5C_site_2950 DeepMRMD:0.8611016;iRNA_m5C:0.000463287448434269 2951 chr13 31513891 31513891 1 + C T LUAD 31513891 + 31513871 31513911 41 GACTGCATTCACGCCTAAAACAGGAGCAGTGCCTGCCTTAA GACTGCATTCACGCCTAAAATAGGAGCAGTGCCTGCCTTAA Direct Loss 0.969376564341585 0 0.903331 0 prediction 0.938753128683171 Functional Loss - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31513891 chr13:31513891 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47631 0 0 0 0 2 exosome 0.500231643925111 0 0.806662 0.000463287850222649 hm5C_site_2951 DeepMRMD:0.806662;iRNA_m5C:0.000463287850222649 2952 chr1 151015529 151015529 1 + C T UCEC 151015529 + 151015509 151015549 41 ACTGGAGAAGATGGACATCACTGGAGGGTGTTCCGAATGGG ACTGGAGAAGATGGACATCATTGGAGGGTGTTCCGAATGGG Direct Loss 0.969365456713838 0 0.44541085 0 prediction 0.938730913427677 Functional Loss - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151015529 chr1:151015529 synonymous SNV . 0 21 hm5C_associated_SNPs_47632 0 0 0 0 2 Nucleus 0.500231643976139 0 0 0.00046328795227768 hm5C_site_2952 DeepMRMD:0;iRNA_m5C:0.00046328795227768 2953 chr21 47362118 47362118 1 + C T rs114577716 47362118 + 47362098 47362138 41 CCCAGGTTGTGTGCTGGAATCGGGGGGTGGCTCTCCTGCCA CCCAGGTTGTGTGCTGGAATTGGGGGGTGGCTCTCCTGCCA Direct Loss 0.969358958083204 0 0.965799 0 prediction 0.938717916166408 Functional Loss - PCBP3 ENSG00000183570 UTR3 Human protein_coding chr21:47362118 chr21:47362118 . . 0 21 hm5C_associated_SNPs_47633 0 0 0 0 0 nucleoplasm 0.500231643920537 0 0.931598 0.000463287841073523 hm5C_site_2953 DeepMRMD:0.931598;iRNA_m5C:0.000463287841073523 2954 chr1 228346075 228346075 1 + C T STAD 228346075 + 228346055 228346095 41 ATGGGCGGAGGCGCATCCAGCGGGAGGGCCTGATGCGCGTG ATGGGCGGAGGCGCATCCAGTGGGAGGGCCTGATGCGCGTG Direct Loss 0.969337710432438 0 0.9019063 0 prediction 0.938675420864876 Functional Loss - GJC2 ENSG00000198835 CDS Human protein_coding chr1:228346075 chr1:228346075 nonsynonymous SNV 0.984 4 21 hm5C_associated_SNPs_47634 0 0 0 0 0 chromatin 0.500231643926606 0 0.8038126 0.000463287853212702 hm5C_site_2954 DeepMRMD:0.8038126;iRNA_m5C:0.000463287853212702 2955 chr8 16884924 16884924 1 + C T COAD 16884924 + 16884904 16884944 41 CTGGCCGGCCCTTCTCCTCCCGAGAGGATGAGGAGAGGGCT CTGGCCGGCCCTTCTCCTCCTGAGAGGATGAGGAGAGGGCT Direct Loss 0.969332095936557 0 0.8900579 0 prediction 0.938664191873113 Functional Loss - MICU3 ENSG00000155970 CDS Human protein_coding chr8:16884924 chr8:16884924 stopgain 0.915 0 21 hm5C_associated_SNPs_47635 0 0 0 0 0 cytosol 0.500231643921092 0 0.7801158 0.000463287842184856 hm5C_site_2955 DeepMRMD:0.7801158;iRNA_m5C:0.000463287842184856 2956 chr9 100616607 100616607 1 + C T UCEC 100616607 + 100616587 100616627 41 CCCAACGCGGAGGACATGTTCGAGAGCGGCAGCTTCCTGCG CCCAACGCGGAGGACATGTTTGAGAGCGGCAGCTTCCTGCG Direct Loss 0.969281573316411 0 0.90290433 0 prediction 0.938563146632822 Functional Loss - FOXE1 ENSG00000178919 CDS Human protein_coding chr9:100616607 chr9:100616607 synonymous SNV . 0 21 hm5C_associated_SNPs_47636 0 0 0 0 0 exosome 0.500231643921093 0 0.80580866 0.000463287842186189 hm5C_site_2956 DeepMRMD:0.80580866;iRNA_m5C:0.000463287842186189 2957 chr2 234627611 234627611 1 + C G rs182680267 234627611 + 234627591 234627631 41 TCAGCATGCGGGAGGCCTTGCGGGAGCTCCATGCCAGAGGC TCAGCATGCGGGAGGCCTTGGGGGAGCTCCATGCCAGAGGC Direct Loss 0.969272731610264 0 0.91086626 0 prediction 0.938545463220528 Functional Loss - UGT1A4 ENSG00000244474 CDS Human protein_coding chr2:234627611 chr2:234627611 nonsynonymous SNV 0.023 3 21 hm5C_associated_SNPs_47637 0 0 0 0 0 exosome 0.500231643905625 0 0.82173252 0.00046328781125049 hm5C_site_2957 DeepMRMD:0.82173252;iRNA_m5C:0.00046328781125049 2958 chr2 20870740 20870740 1 + C A LUSC 20870740 + 20870720 20870760 41 CTCAGAGCCGCTGCCCGACCCAGGAACCGGCACCGCGTCGC CTCAGAGCCGCTGCCCGACCAAGGAACCGGCACCGCGTCGC Direct Loss 0.96925896722929 0 0.923943 0 prediction 0.93851793445858 Functional Loss - GDF7 ENSG00000143869 CDS Human protein_coding chr2:20870740 chr2:20870740 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_47638 0 0 0 0 0 exosome 0.500231618356359 0 0.847886 0.000463236712717308 hm5C_site_2958 DeepMRMD:0.847886;iRNA_m5C:0.000463236712717308 2959 chr6 153043007 153043007 1 + C G HNSC 153043007 + 153042987 153043027 41 ATCTCACAGTGGAGTTCAAGCAGGAGATCTAGGTCTTCTTA ATCTCACAGTGGAGTTCAAGGAGGAGATCTAGGTCTTCTTA Direct Loss 0.96925283774686 0 0.93115556 0 prediction 0.93850567549372 Functional Loss - MYCT1 ENSG00000120279 CDS Human protein_coding chr6:153043007 chr6:153043007 nonsynonymous SNV 0.788 0 21 hm5C_associated_SNPs_47639 0 0 0 0 0 Cytosol 0.500231769430915 0 0.86231112 0.000463538861829704 hm5C_site_2959 DeepMRMD:0.86231112;iRNA_m5C:0.000463538861829704 2960 chr15 65869710 65869710 1 + C T rs181723777 65869710 + 65869690 65869730 41 AGGTCAAGGCTGCAGTGAGCCGAGATTGTGCCACTGCACTG AGGTCAAGGCTGCAGTGAGCTGAGATTGTGCCACTGCACTG Direct Loss 0.969234398141332 0 0.73865914 0 prediction 0.938468796282663 Functional Loss - HACD3 ENSG00000074696 UTR3 Human protein_coding chr15:65869710 chr15:65869710 . . 0 21 hm5C_associated_SNPs_47640 0 0 1 0 0 Ribosome 0.500283713570714 0 0.47731828 0.000567427141428434 hm5C_site_2960 DeepMRMD:0.47731828;iRNA_m5C:0.000567427141428434 2961 chr19 39898462 39898462 1 + C T CESC 39898462 + 39898442 39898482 41 CAGCCCAGGCTGGGGCTCCTCGGGACCCTGGAGCCTGAGCC CAGCCCAGGCTGGGGCTCCTTGGGACCCTGGAGCCTGAGCC Direct Loss 0.96921919594185 0 0.9081626 0 prediction 0.938438391883701 Functional Loss - ZFP36 ENSG00000128016 CDS Human protein_coding chr19:39898462 chr19:39898462 nonsynonymous SNV 0.039 0 21 hm5C_associated_SNPs_47641 0 0 0 0 1 nucleus 0.500231643921092 0 0.8163252 0.000463287842184856 hm5C_site_2961 DeepMRMD:0.8163252;iRNA_m5C:0.000463287842184856 2962 chr7 72413471 72413471 1 + C T SKCM 72413471 + 72413451 72413491 41 GGCCGCTGAGGGGCAGCCACCGGGGGCCGCCAAGCCGGCCC GGCCGCTGAGGGGCAGCCACTGGGGGCCGCCAAGCCGGCCC Direct Loss 0.969217396326739 0 0.9526052 0 prediction 0.938434792653478 Functional Loss - POM121 ENSG00000196313 CDS Human protein_coding chr7:72413471 chr7:72413471 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_47642 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0 0.9052104 0.000463287842184856 hm5C_site_2962 DeepMRMD:0.9052104;iRNA_m5C:0.000463287842184856 2963 chr9 140130619 140130619 1 + C T BLCA 140130619 + 140130599 140130639 41 GGCATGGAGCTGGCCGCTGTCGGGGGTCCCCTGGTGGGGCT GGCATGGAGCTGGCCGCTGTTGGGGGTCCCCTGGTGGGGCT Direct Loss 0.96919823694185 0 0.9682249 0 prediction 0.9383964738837 Functional Loss - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140130619 chr9:140130619 synonymous SNV . 0 21 hm5C_associated_SNPs_47643 0 0 0 0 0 exosome 0.500231643921092 0 0.9364498 0.000463287842184856 hm5C_site_2963 DeepMRMD:0.9364498;iRNA_m5C:0.000463287842184856 2964 chr1 114524038 114524038 1 + C T UCEC 114524038 + 114524018 114524058 41 TTTGGGCTGTCTATGCCACCCGGGAGGATGACAGGCACTTG TTTGGGCTGTCTATGCCACCTGGGAGGATGACAGGCACTTG Direct Loss 0.969198094863337 0 0.8809551 0 prediction 0.938396189726675 Functional Loss - OLFML3 ENSG00000116774 CDS Human protein_coding chr1:114524038 chr1:114524038 nonsynonymous SNV 0.125 3 21 hm5C_associated_SNPs_47644 0 0 1 0 0 exosome 0.500231643921092 0 0.7619102 0.000463287842184856 hm5C_site_2964 DeepMRMD:0.7619102;iRNA_m5C:0.000463287842184856 2965 chr1 12919682 12919682 1 + C T rs17038667 12919682 + 12919662 12919702 41 AGCAGAGGACTGTCCAAGGACGGGAGAGCACCAGCCCTTAA AGCAGAGGACTGTCCAAGGATGGGAGAGCACCAGCCCTTAA Direct Loss 0.96917054383809 0 0.6148684 0 prediction 0.93834108767618 Functional Loss - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12919682 chr1:12919682 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47645 0 0 0 0 0 unknown 0.50023164386935 0 0.2297368 0.000463287738700302 hm5C_site_2965 DeepMRMD:0.2297368;iRNA_m5C:0.000463287738700302 2966 chr16 2848539 2848539 1 + C T rs145634372 2848539 + 2848519 2848559 41 CTGCTGGCTCGGGCTGGACTCGGGAAGCCGGGTGAGCTCGG CTGCTGGCTCGGGCTGGACTTGGGAAGCCGGGTGAGCTCGG Direct Loss 0.969158034435167 0 0.9406991 0 prediction 0.938316068870334 Functional Loss - PRSS41 ENSG00000215148 ncRNA_exonic Human protein_coding chr16:2848539 chr16:2848539 . . 0 21 hm5C_associated_SNPs_47646 0 0 0 0 0 unknown 0.500231643921092 0 0.8813982 0.000463287842184856 hm5C_site_2966 DeepMRMD:0.8813982;iRNA_m5C:0.000463287842184856 2967 chr6 25726539 25726539 1 + C T LGG 25726539 + 25726519 25726559 41 AATGCGAGTTTTTTTGTTATCGCGAGACGCATTGCCTGCCA AATGCGAGTTTTTTTGTTATTGCGAGACGCATTGCCTGCCA Direct Loss 0.969155890692666 0 0.9458219 0 prediction 0.938311781385331 Functional Loss - HIST1H2AA ENSG00000164508 CDS Human protein_coding chr6:25726539 chr6:25726539 nonsynonymous SNV 0.008 2 21 hm5C_associated_SNPs_47647 0 0 0 0 0 unknown 0.500231716652568 0 0.8916438 0.00046343330513654 hm5C_site_2967 DeepMRMD:0.8916438;iRNA_m5C:0.00046343330513654 2968 chr14 96730467 96730467 1 + C T GBM 96730467 + 96730447 96730487 41 TGGCCAGCCGGAGGCAGCAGCGGCGGAGGCAGGCCCGGGTC TGGCCAGCCGGAGGCAGCAGTGGCGGAGGCAGGCCCGGGTC Direct Loss 0.969154659736507 0 0.91117203 0 prediction 0.938309319473013 Functional Loss - BDKRB1 ENSG00000100739 CDS Human protein_coding chr14:96730467 chr14:96730467 nonsynonymous SNV 0.241 3 21 hm5C_associated_SNPs_47648 0 0 0 0 0 nucleus 0.500231660451454 0 0.82234406 0.000463320902907238 hm5C_site_2968 DeepMRMD:0.82234406;iRNA_m5C:0.000463320902907238 2969 chr11 65338137 65338137 1 + C T HNSC 65338137 + 65338117 65338157 41 CGAAGGTGCTGCAGGCGCGACGGGAGCGGCAAGATCGCATC CGAAGGTGCTGCAGGCGCGATGGGAGCGGCAAGATCGCATC Direct Loss 0.96913727780294 0 0.7718675 0 prediction 0.93827455560588 Functional Loss - SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338137 chr11:65338137 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_47649 0 0 0 0 2 Cytosol 0.500231616492406 0 0.543735 0.000463232984811768 hm5C_site_2969 DeepMRMD:0.543735;iRNA_m5C:0.000463232984811768 2970 chrX 35821008 35821008 1 + C T DLBC 35821008 + 35820988 35821028 41 CTGGGAAGTGCTGAATTTGACGGGAGTATATTCTGGGAAGA CTGGGAAGTGCTGAATTTGATGGGAGTATATTCTGGGAAGA Direct Loss 0.969134438113253 0 0.8896538 0 prediction 0.938268876226505 Functional Loss - MAGEB16 ENSG00000189023 CDS Human protein_coding chrX:35821008 chrX:35821008 nonsynonymous SNV 0.022 0 21 hm5C_associated_SNPs_47650 0 0 0 0 0 exosome 0.50023164867738 0 0.7793076 0.000463297354759362 hm5C_site_2970 DeepMRMD:0.7793076;iRNA_m5C:0.000463297354759362 2971 chr19 19651071 19651071 1 + C T COAD 19651071 + 19651051 19651091 41 CCCGGAGGCGACGGCGACTTCGAGAGCCTGGCTGCCATCCG CCCGGAGGCGACGGCGACTTTGAGAGCCTGGCTGCCATCCG Direct Loss 0.969129655929118 0 0.92085016 0 prediction 0.938259311858237 Functional Loss - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19651071 chr19:19651071 synonymous SNV . 0 21 hm5C_associated_SNPs_47651 0 0 0 0 2 exosome 0.500231643920672 0 0.84170032 0.000463287841344862 hm5C_site_2971 DeepMRMD:0.84170032;iRNA_m5C:0.000463287841344862 2972 chr21 35772119 35772119 1 + C T COAD 35772119 + 35772099 35772139 41 GACAAGGAAGGAAGGACAATCGGGAGGAGGGAGTCTTGCTT GACAAGGAAGGAAGGACAATTGGGAGGAGGGAGTCTTGCTT Direct Loss 0.96911699770601 0 0.94314826 0 prediction 0.938233995412019 Functional Loss - C21orf140 ENSG00000205670 CDS Human protein_coding chr21:35772119 chr21:35772119 synonymous SNV . 0 21 hm5C_associated_SNPs_47652 0 0 1 0 1 exosome 0.500231643921092 0 0.88629652 0.000463287842184856 hm5C_site_2972 DeepMRMD:0.88629652;iRNA_m5C:0.000463287842184856 2973 chr2 88991297 88991297 1 + C T CESC 88991297 + 88991277 88991317 41 AGGGCCGGGGGCGCGGCCTCCGGCGGAGGAGGGAACAGCTG AGGGCCGGGGGCGCGGCCTCTGGCGGAGGAGGGAACAGCTG Direct Loss 0.969101038582456 0 0.9164014 0 prediction 0.938202077164913 Functional Loss - RPIA ENSG00000153574 CDS Human protein_coding chr2:88991297 chr2:88991297 synonymous SNV . 0 21 hm5C_associated_SNPs_47653 0 0 1 0 0 Cytosol 0.500231650106986 0 0.8328028 0.000463300213971118 hm5C_site_2973 DeepMRMD:0.8328028;iRNA_m5C:0.000463300213971118 2974 chr5 173416508 173416508 1 + C G rs115473626 173416508 + 173416488 173416528 41 GCTCAGGGTCCCCACGACCCCTGGTGTGGAGGCTGCGGCCT GCTCAGGGTCCCCACGACCCGTGGTGTGGAGGCTGCGGCCT Direct Loss 0.969087311594789 0 0.41289333 0 prediction 0.938174623189578 Functional Loss - C5orf47 ENSG00000185056 CDS Human protein_coding chr5:173416508 chr5:173416508 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_47654 0 0 0 0 1 exosome 0.500231643921087 0 0 0.000463287842174642 hm5C_site_2974 DeepMRMD:0;iRNA_m5C:0.000463287842174642 2975 chr4 189060943 189060943 1 + C T GBM 189060943 + 189060923 189060963 41 CTGGGGAGGCTGGCCAGCATCGCCAGGCAGCTCCGGTCCCA CTGGGGAGGCTGGCCAGCATTGCCAGGCAGCTCCGGTCCCA Direct Loss 0.969070299511153 0 0.8604763 0 prediction 0.938140599022307 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189060943 chr4:189060943 synonymous SNV . 0 21 hm5C_associated_SNPs_47655 0 0 0 0 0 nucleus 0.500231641898253 0 0.7209526 0.000463283796505731 hm5C_site_2975 DeepMRMD:0.7209526;iRNA_m5C:0.000463283796505731 Menarche (age at onset) 2976 chr14 71109141 71109141 1 + C T PAAD 71109141 + 71109121 71109161 41 CGCCCCCCGGGGAACGGGAGCGGGACTCGCGCCCGGCCTCC CGCCCCCCGGGGAACGGGAGTGGGACTCGCGCCCGGCCTCC Direct Loss 0.969060381314981 0 0.9372045 0 prediction 0.938120762629962 Functional Loss - TTC9 ENSG00000133985 CDS Human protein_coding chr14:71109141 chr14:71109141 nonsynonymous SNV 0.109 2 21 hm5C_associated_SNPs_47656 0 0 0 0 0 exosome 0.50023164334242 0 0.874409 0.000463286684839304 hm5C_site_2976 DeepMRMD:0.874409;iRNA_m5C:0.000463286684839304 2977 chr5 132149600 132149600 1 + C A rs376888433 132149600 + 132149580 132149620 41 GCCCGCACCCTTCGGCCCCCCGGGGGCAGCGGCCCAGCCGT GCCCGCACCCTTCGGCCCCCAGGGGGCAGCGGCCCAGCCGT Direct Loss 0.969046956575356 0 0.9201715 0 prediction 0.938093913150711 Functional Loss - SOWAHA ENSG00000198944 CDS Human protein_coding chr5:132149600 chr5:132149600 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47657 0 0 0 0 0 exosome 0.500231643921092 0 0.840343 0.000463287842184856 hm5C_site_2977 DeepMRMD:0.840343;iRNA_m5C:0.000463287842184856 2978 chrX 7811586 7811586 1 + C T rs150071100 7811586 + 7811566 7811606 41 GCAGTTCGTAGAGGGAGACGCGGGAAGAAAGGGGCTGCGAC GCAGTTCGTAGAGGGAGACGTGGGAAGAAAGGGGCTGCGAC Direct Loss 0.96899163430637 0 0.9115659 0 prediction 0.937983268612741 Functional Loss - VCX ENSG00000182583 CDS Human protein_coding chrX:7811586 chrX:7811586 synonymous SNV . 0 21 hm5C_associated_SNPs_47658 0 0 0 0 1 unknown 0.500231643921092 0 0.8231318 0.000463287842184856 hm5C_site_2978 DeepMRMD:0.8231318;iRNA_m5C:0.000463287842184856 2979 chr11 1902750 1902750 1 + C T UCEC 1902750 + 1902730 1902770 41 GGCCAGAGCAGCGGCAGCAGCACGAGGGGGCGCAGGGCGCC GGCCAGAGCAGCGGCAGCAGTACGAGGGGGCGCAGGGCGCC Direct Loss 0.968965046431096 0 0.7837639 0 prediction 0.937930092862193 Functional Loss - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1902750 chr11:1902750 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47659 0 0 0 0 2 exosome 0.500231643921092 0 0.5675278 0.000463287842184856 hm5C_site_2979 DeepMRMD:0.5675278;iRNA_m5C:0.000463287842184856 2980 chr7 5266847 5266847 1 + C T COAD 5266847 + 5266827 5266867 41 ACCACCTGGACCGGGTACTTCGGGAAAGTGCTCATGGCCTC ACCACCTGGACCGGGTACTTTGGGAAAGTGCTCATGGCCTC Direct Loss 0.96894671665645 0 0.92705464 0 prediction 0.937893433312901 Functional Loss - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5266847 chr7:5266847 synonymous SNV . 0 21 hm5C_associated_SNPs_47660 0 0 1 0 1 Cytosol 0.500231638371457 0 0.85410928 0.000463276742914021 hm5C_site_2980 DeepMRMD:0.85410928;iRNA_m5C:0.000463276742914021 2981 chr18 77806613 77806613 1 + C T rs148151854 77806613 + 77806593 77806633 41 GCTGGGCTGGCACGTGGCGCCGGGGGCTCCATCCCTGGGGC GCTGGGCTGGCACGTGGCGCTGGGGGCTCCATCCCTGGGGC Direct Loss 0.968943051240314 0 0.93360656 0 prediction 0.937886102480629 Functional Loss - RBFA ENSG00000267127 intronic Human protein_coding chr18:77806613 chr18:77806613 . . 0 21 hm5C_associated_SNPs_47661 0 0 1 0 0 Ribosome 0.500231643920906 0 0.86721312 0.00046328784181271 hm5C_site_2981 DeepMRMD:0.86721312;iRNA_m5C:0.00046328784181271 2982 chr21 41137664 41137664 1 + C A rs145170006 41137664 + 41137644 41137684 41 TCTCAGAGGTACGACCAGGGCGGGAACTTCACCTCGGAGAT TCTCAGAGGTACGACCAGGGAGGGAACTTCACCTCGGAGAT Direct Loss 0.968937836961773 0 0.4689885 0 prediction 0.937875673923546 Functional Loss - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41137664 chr21:41137664 synonymous SNV . 0 21 hm5C_associated_SNPs_47662 0 0 0 0 0 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_2982 DeepMRMD:0;iRNA_m5C:0.000463287842184856 2983 chrX 49106657 49106657 1 + C T UCEC 49106657 + 49106637 49106677 41 TCAGCAACCTGGAGAAGATCCGGGAGGACTACCGAGCCCTC TCAGCAACCTGGAGAAGATCTGGGAGGACTACCGAGCCCTC Direct Loss 0.968900537555901 0 0.91725284 0 prediction 0.937801075111802 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49106657 chrX:49106657 nonsynonymous SNV 0.975 1 21 hm5C_associated_SNPs_47663 0 0 1 0 1 Cytosol 0.500231643921086 0 0.83450568 0.000463287842171756 hm5C_site_2983 DeepMRMD:0.83450568;iRNA_m5C:0.000463287842171756 2984 chr2 220110309 220110309 1 + C T rs375414817 220110309 + 220110289 220110329 41 TAGACCGGGGTGGGCCCTGCCAGGAGTGGGCCTGAGCCTCG TAGACCGGGGTGGGCCCTGCTAGGAGTGGGCCTGAGCCTCG Direct Loss 0.968900447345101 0 0.9128994 0 prediction 0.937800894690201 Functional Loss - STK16 ENSG00000115661 UTR5 Human protein_coding chr2:220110309 chr2:220110309 . . 0 21 hm5C_associated_SNPs_47664 0 0 1 0 0 Ribosome 0.500231643921095 0 0.8257988 0.000463287842189519 hm5C_site_2984 DeepMRMD:0.8257988;iRNA_m5C:0.000463287842189519 2985 chr6 17421817 17421817 1 + C G LGG 17421817 + 17421797 17421837 41 TGCAGGGACTGGTGGAAAGACTGGAACGAGCTGTCAGCCGC TGCAGGGACTGGTGGAAAGAGTGGAACGAGCTGTCAGCCGC Direct Loss 0.96888999343492 0 0.44256115 0 prediction 0.93777998686984 Functional Loss - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17421817 chr6:17421817 nonsynonymous SNV 0.626 4 21 hm5C_associated_SNPs_47665 0 0 1 0 2 exosome 0.500231643262439 0 0 0.000463286524877482 hm5C_site_2985 DeepMRMD:0;iRNA_m5C:0.000463286524877482 2986 chr5 140574398 140574398 1 + C T STAD 140574398 + 140574378 140574418 41 CCAGTATGAGGTGTGTCTGACGGGAGGCCCCGGGACCAGTG CCAGTATGAGGTGTGTCTGATGGGAGGCCCCGGGACCAGTG Direct Loss 0.968876207857111 0 0.91340494 0 prediction 0.937752415714222 Functional Loss - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140574398 chr5:140574398 nonsynonymous SNV 0.815 0 21 hm5C_associated_SNPs_47666 0 0 0 0 0 exosome 0.500231643921092 0 0.82680988 0.000463287842184856 hm5C_site_2986 DeepMRMD:0.82680988;iRNA_m5C:0.000463287842184856 2987 chr16 50744734 50744734 1 + C A LUAD 50744734 + 50744714 50744754 41 GTGGGTGAGGCGGGCAGTGGCAAGAGCACGCTCCTGCAGCG GTGGGTGAGGCGGGCAGTGGAAAGAGCACGCTCCTGCAGCG Direct Loss 0.968868578074744 0 0.8693186 0 prediction 0.937737156149488 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50744734 chr16:50744734 synonymous SNV . 0 21 hm5C_associated_SNPs_47667 0 0 0 0 0 exosome 0.500231644219999 0 0.7386372 0.0004632884399971 hm5C_site_2987 DeepMRMD:0.7386372;iRNA_m5C:0.0004632884399971 2988 chr12 121078593 121078593 1 + C T rs541559696 121078593 + 121078573 121078613 41 GAGCCCCGTTCTCTGCCCGCCGGGGGCCCCGCGCCGCGCCG GAGCCCCGTTCTCTGCCCGCTGGGGGCCCCGCGCCGCGCCG Direct Loss 0.968803756293354 0 0.93642914 0 prediction 0.937607512586709 Functional Loss - CABP1 ENSG00000157782 CDS Human protein_coding chr12:121078593 chr12:121078593 synonymous SNV . 0 21 hm5C_associated_SNPs_47668 0 0 0 0 0 Nucleus 0.500231643921092 0 0.87285828 0.000463287842184856 hm5C_site_2988 DeepMRMD:0.87285828;iRNA_m5C:0.000463287842184856 2989 chr12 124144076 124144076 1 + C T COAD 124144076 + 124144056 124144096 41 CTTGCAGGCTTGTGACATCACGGGAGGACTGTACCTGAAGG CTTGCAGGCTTGTGACATCATGGGAGGACTGTACCTGAAGG Direct Loss 0.968772441390272 0 0.9200134 0 prediction 0.937544882780543 Functional Loss - GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144076 chr12:124144076 nonsynonymous SNV 0.936 4 21 hm5C_associated_SNPs_47669 0 0 1 0 2 Cytosol 0.500231643914705 0 0.8400268 0.000463287829410852 hm5C_site_2989 DeepMRMD:0.8400268;iRNA_m5C:0.000463287829410852 2990 chr14 96157121 96157121 1 + C T LUAD 96157121 + 96157101 96157141 41 GGCAGATGGCAGTGCATACCCGGGAGCTACTCTCCTCCGGC GGCAGATGGCAGTGCATACCTGGGAGCTACTCTCCTCCGGC Direct Loss 0.968746089920097 0 0.93462557 0 prediction 0.937492179840195 Functional Loss - TCL1B ENSG00000213231 CDS Human protein_coding chr14:96157121 chr14:96157121 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47670 0 0 0 0 1 exosome 0.500231643921092 0 0.86925114 0.000463287842184856 hm5C_site_2990 DeepMRMD:0.86925114;iRNA_m5C:0.000463287842184856 2991 chr12 5153647 5153647 1 + C T BRCA 5153647 + 5153627 5153667 41 GCACGGTGGAGGACCAGGCTCTGGGCACGGCGTCCCTGCAC GCACGGTGGAGGACCAGGCTTTGGGCACGGCGTCCCTGCAC Direct Loss 0.968738311800283 0 0.8677495 0 prediction 0.937476623600565 Functional Loss - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5153647 chr12:5153647 synonymous SNV . 0 21 hm5C_associated_SNPs_47671 0 0 0 0 0 exosome 0.500231643921062 0 0.735499 0.000463287842123572 hm5C_site_2991 DeepMRMD:0.735499;iRNA_m5C:0.000463287842123572 2992 chr8 22224787 22224787 1 + C T rs149891032 22224787 + 22224767 22224807 41 GCCGGGCATGCGCGCGGTGCCGGGGCCCGGACGCAGTGAGG GCCGGGCATGCGCGCGGTGCTGGGGCCCGGACGCAGTGAGG Direct Loss 0.968736096872543 0 0.9109478 0 prediction 0.937472193745085 Functional Loss - SLC39A14 ENSG00000104635 UTR5 Human protein_coding chr8:22224787 chr8:22224787 . . 0 21 hm5C_associated_SNPs_47672 0 0 0 0 0 Endoplasmic reticulum 0.500259652744044 0 0.8218956 0.000519305488087207 hm5C_site_2992 DeepMRMD:0.8218956;iRNA_m5C:0.000519305488087207 2993 chr5 14665063 14665063 1 + C G rs552866272 14665063 + 14665043 14665083 41 GCCAGCGGGCAGCCGCGGCCCGAGATGCAGTGCCCGGCCGA GCCAGCGGGCAGCCGCGGCCGGAGATGCAGTGCCCGGCCGA Direct Loss 0.968731083609208 0 0.7533667 0 prediction 0.937462167218417 Functional Loss - OTULIN ENSG00000154124 CDS Human protein_coding chr5:14665063 chr5:14665063 synonymous SNV . 0 21 hm5C_associated_SNPs_47673 0 0 1 0 1 Ribosome 0.500231644034632 0 0.5067334 0.000463288069263657 hm5C_site_2993 DeepMRMD:0.5067334;iRNA_m5C:0.000463288069263657 2994 chr6 27833315 27833315 1 + C G rs41269275 27833315 + 27833295 27833335 41 GTGCTGGAGTACCTGACTGCCGAGATCCTGGAGCTGGCGGG GTGCTGGAGTACCTGACTGCGGAGATCCTGGAGCTGGCGGG Direct Loss 0.968730230251037 0 0.8968317 0 prediction 0.937460460502075 Functional Loss - HIST1H2AL ENSG00000198374 CDS Human other chr6:27833315 chr6:27833315 synonymous SNV . 0 21 hm5C_associated_SNPs_47674 0 0 1 0 0 exosome 0.500231643827419 0 0.7936634 0.00046328765483783 hm5C_site_2994 DeepMRMD:0.7936634;iRNA_m5C:0.00046328765483783 2995 chr5 79950719 79950719 1 + C T rs201149584 79950719 + 79950699 79950739 41 TGCAGCGGCTGCAGCGGCCGCAGCGGCCGCAGCGCCCCCAG TGCAGCGGCTGCAGCGGCCGTAGCGGCCGCAGCGCCCCCAG Direct Loss 0.968726920753712 0 0.9090061 0 prediction 0.937453841507424 Functional Loss - MSH3 ENSG00000113318 CDS Human protein_coding chr5:79950719 chr5:79950719 nonsynonymous SNV 0.091 1 21 hm5C_associated_SNPs_47675 0 0 1 0 1 chromatin 0.500231642716785 0 0.8180122 0.000463285433570881 hm5C_site_2995 DeepMRMD:0.8180122;iRNA_m5C:0.000463285433570881 2996 chr16 25232874 25232874 1 + C T STAD 25232874 + 25232854 25232894 41 TACTGGGTCTCACAGCTGCTCGGGGGGATGCTCGGGGCTGC TACTGGGTCTCACAGCTGCTTGGGGGGATGCTCGGGGCTGC Direct Loss 0.968713832309356 0 0.92259467 0 prediction 0.937427664618713 Functional Loss - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25232874 chr16:25232874 synonymous SNV . 0 21 hm5C_associated_SNPs_47676 0 0 0 0 2 Ribosome 0.500231643921098 0 0.84518934 0.000463287842196403 hm5C_site_2996 DeepMRMD:0.84518934;iRNA_m5C:0.000463287842196403 Blood protein levels 2997 chr1 197889149 197889149 1 + C T UCEC 197889149 + 197889129 197889169 41 CCCGCCCTGTGCGCCGGCTGCGGGGGCAAGATCTCGGACAG CCCGCCCTGTGCGCCGGCTGTGGGGGCAAGATCTCGGACAG Direct Loss 0.968697973754403 0 0.93805957 0 prediction 0.937395947508807 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197889149 chr1:197889149 synonymous SNV . 0 21 hm5C_associated_SNPs_47677 0 0 0 0 1 exosome 0.500231643920354 0 0.87611914 0.000463287840707372 hm5C_site_2997 DeepMRMD:0.87611914;iRNA_m5C:0.000463287840707372 2998 chr6 43096852 43096852 1 + C T SKCM 43096852 + 43096832 43096872 41 TGCTCGATGGGGCCCCTGTCCAGGACACGGAGCGGCGTTTC TGCTCGATGGGGCCCCTGTCTAGGACACGGAGCGGCGTTTC Direct Loss 0.968689209922813 0 0.8989989 0 prediction 0.937378419845626 Functional Loss - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43096852 chr6:43096852 stopgain 0.971 0 21 hm5C_associated_SNPs_47678 0 0 1 0 0 Endoplasmic reticulum 0.50023162791397 0 0.7979978 0.000463255827939157 hm5C_site_2998 DeepMRMD:0.7979978;iRNA_m5C:0.000463255827939157 2999 chr13 64311713 64311713 1 + C T rs535310477 64311713 + 64311693 64311733 41 GGCTGTCAGTCCCCGCCTCCCGGGGGGTGCCTCCCGCCCCT GGCTGTCAGTCCCCGCCTCCTGGGGGGTGCCTCCCGCCCCT Direct Loss 0.968669828032937 0 0.9621079 0 prediction 0.937339656065875 Functional Loss - OR7E156P ENSG00000231061 ncRNA_intronic Human antisense chr13:64311713 chr13:64311713 . . 0 21 hm5C_associated_SNPs_47679 0 0 0 0 0 unknown 0.500231643697111 0 0.9242158 0.00046328739422119 hm5C_site_2999 DeepMRMD:0.9242158;iRNA_m5C:0.00046328739422119 3000 chrX 118708942 118708942 1 + C T SKCM 118708942 + 118708922 118708962 41 GTGTGGAACGCGGTCATTTTCGGGTGAGTCTGCGTTCGTGG GTGTGGAACGCGGTCATTTTTGGGTGAGTCTGCGTTCGTGG Direct Loss 0.968668154234737 0 0.9257392 0 prediction 0.937336308469473 Functional Loss - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118708942 chrX:118708942 synonymous SNV . 0 21 hm5C_associated_SNPs_47680 0 0 1 0 2 Ribosome 0.500231646471469 0 0.8514784 0.000463292942937787 hm5C_site_3000 DeepMRMD:0.8514784;iRNA_m5C:0.000463292942937787 3001 chr3 196295871 196295871 1 + C G rs558273863 196295871 + 196295851 196295891 41 AGGCGATGGCGGCGCCGGCCCCGGGGGCTGGGGCAGCCTCG AGGCGATGGCGGCGCCGGCCGCGGGGGCTGGGGCAGCCTCG Direct Loss 0.96866537567335 0 0.9201385 0 prediction 0.9373307513467 Functional Loss - FBXO45 ENSG00000174013 CDS Human protein_coding chr3:196295871 chr3:196295871 nonsynonymous SNV 0.479 1 21 hm5C_associated_SNPs_47681 0 0 1 0 0 Cytosol 0.500231643921092 0 0.840277 0.000463287842184856 hm5C_site_3001 DeepMRMD:0.840277;iRNA_m5C:0.000463287842184856 3002 chrX 102192795 102192795 1 + C T UCEC 102192795 + 102192775 102192815 41 CGGCACAGGTTGAACTGGCTCGGGAGGCCGAGCAAGGTACT CGGCACAGGTTGAACTGGCTTGGGAGGCCGAGCAAGGTACT Direct Loss 0.96864735096549 0 0.89605665 0 prediction 0.93729470193098 Functional Loss - RAB40AL ENSG00000102128 CDS Human protein_coding chrX:102192795 chrX:102192795 synonymous SNV . 0 21 hm5C_associated_SNPs_47682 0 0 0 0 0 exosome 0.500231643921092 0 0.7921133 0.000463287842184412 hm5C_site_3002 DeepMRMD:0.7921133;iRNA_m5C:0.000463287842184412 3003 chr3 138669284 138669284 1 + C T UCEC 138669284 + 138669264 138669304 41 TCCGCTGTCCCCTTTCCTAGCGGGACCCCGAAACACCCGGC TCCGCTGTCCCCTTTCCTAGTGGGACCCCGAAACACCCGGC Direct Loss 0.968632398118524 0 0.92041624 0 prediction 0.937264796237048 Functional Loss - FOXL2NB ENSG00000206262 CDS Human protein_coding chr3:138669284 chr3:138669284 nonsynonymous SNV 0.004 1 21 hm5C_associated_SNPs_47683 0 0 1 0 0 Nucleus 0.500231643921088 0 0.84083248 0.00046328784217553 hm5C_site_3003 DeepMRMD:0.84083248;iRNA_m5C:0.00046328784217553 3004 chr13 21751268 21751268 1 + C T LUSC 21751268 + 21751248 21751288 41 GTGCGCAGGAGGGAGGCCTTCGAGGCCATAAAGGCGGCCGC GTGCGCAGGAGGGAGGCCTTTGAGGCCATAAAGGCGGCCGC Direct Loss 0.968628790637064 0 0.91109717 0 prediction 0.937257581274127 Functional Loss - MRPL57 ENSG00000173141 CDS Human protein_coding chr13:21751268 chr13:21751268 synonymous SNV . 0 21 hm5C_associated_SNPs_47684 0 0 1 0 0 Ribosome 0.500231643921102 0 0.82219434 0.000463287842204396 hm5C_site_3004 DeepMRMD:0.82219434;iRNA_m5C:0.000463287842204396 3005 chr22 27026389 27026389 1 + C T STAD 27026389 + 27026369 27026409 41 CCGGTGACTACAAACATTTCCGGGAGTGGGGCTCTCATGCC CCGGTGACTACAAACATTTCTGGGAGTGGGGCTCTCATGCC Direct Loss 0.968617758530142 0 0.90649694 0 prediction 0.937235517060284 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27026389 chr22:27026389 nonsynonymous SNV 0.978 2 21 hm5C_associated_SNPs_47685 0 0 0 0 1 Cytosol 0.500231643921092 0 0.81299388 0.000463287842184856 hm5C_site_3005 DeepMRMD:0.81299388;iRNA_m5C:0.000463287842184856 3006 chr19 1272363 1272363 1 + C A BLCA 1272363 + 1272343 1272383 41 GCCGCGCCCTGGTCTGGCCTCTGGGGTGAAGCTGCCTCTTG GCCGCGCCCTGGTCTGGCCTATGGGGTGAAGCTGCCTCTTG Direct Loss 0.968605228080771 0 0.90190655 0 prediction 0.937210456161541 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272363 chr19:1272363 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_47686 0 0 1 1 0 Ribosome 0.500231643937109 0 0.8038131 0.000463287874218121 hm5C_site_3006 DeepMRMD:0.8038131;iRNA_m5C:0.000463287874218121 3007 chr13 46287406 46287406 1 + C T UCEC 46287406 + 46287386 46287426 41 GCCCTGCCCCGGCTGAGCCGCAGGATGGCGAGCCAGCACTC GCCCTGCCCCGGCTGAGCCGTAGGATGGCGAGCCAGCACTC Direct Loss 0.968600888520306 0 0.9012944 0 prediction 0.937201777040613 Functional Loss - SPERT ENSG00000174015 CDS Human protein_coding chr13:46287406 chr13:46287406 synonymous SNV . 0 21 hm5C_associated_SNPs_47687 0 0 0 0 1 exosome 0.500315903876274 0 0.8025888 0.000631807752547564 hm5C_site_3007 DeepMRMD:0.8025888;iRNA_m5C:0.000631807752547564 3008 chr12 88442981 88442981 1 + C T BRCA 88442981 + 88442961 88443001 41 TTAGTAAATGGGGAAATTAACAGGACTTTCTTCTTCATCTT TTAGTAAATGGGGAAATTAATAGGACTTTCTTCTTCATCTT Direct Loss 0.968591941844513 0 0.92108667 0 prediction 0.937183883689025 Functional Loss - CEP290 ENSG00000198707 CDS Human protein_coding chr12:88442981 chr12:88442981 nonsynonymous SNV 0.979 0 21 hm5C_associated_SNPs_47688 0 0 1 0 0 Ribosome 0.500231641724547 0 0.84217334 0.000463283449094742 hm5C_site_3008 DeepMRMD:0.84217334;iRNA_m5C:0.000463283449094742 3009 chr11 61897770 61897770 1 + C A KIRC 61897770 + 61897750 61897790 41 GGGCGGTCTGCGTCTAAGCTCAGGATTGCGCAGGTCTCCCC GGGCGGTCTGCGTCTAAGCTAAGGATTGCGCAGGTCTCCCC Direct Loss 0.968518846700319 0 0.8660767 0 prediction 0.937037693400638 Functional Loss - INCENP ENSG00000149503 CDS Human protein_coding chr11:61897770 chr11:61897770 synonymous SNV . 0 21 hm5C_associated_SNPs_47689 0 0 1 0 0 chromatin 0.500231643946029 0 0.7321534 0.000463287892057629 hm5C_site_3009 DeepMRMD:0.7321534;iRNA_m5C:0.000463287892057629 3010 chr6 2766027 2766027 1 + C T rs186673310 2766027 + 2766007 2766047 41 GCGGCCGGGTCGCACCGCGCCGGGGAGCGGGCCAAGGGGCC GCGGCCGGGTCGCACCGCGCTGGGGAGCGGGCCAAGGGGCC Direct Loss 0.968513156390863 0 0.90994966 0 prediction 0.937026312781727 Functional Loss - WRNIP1 ENSG00000124535 CDS Human protein_coding chr6:2766027 chr6:2766027 synonymous SNV . 0 21 hm5C_associated_SNPs_47690 0 0 1 0 0 Ribosome 0.500231643920858 0 0.81989932 0.000463287841715232 hm5C_site_3010 DeepMRMD:0.81989932;iRNA_m5C:0.000463287841715232 3011 chr19 10531609 10531609 1 + C A rs201432982 10531609 + 10531589 10531629 41 ACAGCGCGGAGCGCGCCGAGCGGGAGCGGCAGCCGCACCGG ACAGCGCGGAGCGCGCCGAGAGGGAGCGGCAGCCGCACCGG Direct Loss 0.968506546177991 0 0.92080843 0 prediction 0.937013092355982 Functional Loss - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10531609 chr19:10531609 synonymous SNV . 0 21 hm5C_associated_SNPs_47691 0 0 0 0 0 chromatin 0.50023164392519 0 0.84161686 0.000463287850380523 hm5C_site_3011 DeepMRMD:0.84161686;iRNA_m5C:0.000463287850380523 3012 chr8 28196832 28196832 1 + C T rs189594057 28196832 + 28196812 28196852 41 AAGAGATTTGGGGGCTTCACCGGGGCCCGGAAGTCGGCCAG AAGAGATTTGGGGGCTTCACTGGGGCCCGGAAGTCGGCCAG Direct Loss 0.96847128225106 0 0.9305299 0 prediction 0.936942564502119 Functional Loss - PNOC ENSG00000168081 CDS Human protein_coding chr8:28196832 chr8:28196832 synonymous SNV . 0 21 hm5C_associated_SNPs_47692 0 0 0 0 0 exosome 0.500231643920951 0 0.8610598 0.000463287841901749 hm5C_site_3012 DeepMRMD:0.8610598;iRNA_m5C:0.000463287841901749 3013 chr3 182511351 182511351 1 + C G rs10222374 182511351 + 182511331 182511371 41 GCGCCGGGCGGGGGCGGCGCCGGGGCCGCGCCTGTAGGACT GCGCCGGGCGGGGGCGGCGCGGGGGCCGCGCCTGTAGGACT Direct Loss 0.968379674955888 0 0.9271661 0 prediction 0.936759349911776 Functional Loss - ATP11B ENSG00000058063 UTR5 Human protein_coding chr3:182511351 chr3:182511351 . . 0 21 hm5C_associated_SNPs_47693 0 0 1 0 0 Endoplasmic reticulum 0.500231643921499 0 0.8543322 0.00046328784299865 hm5C_site_3013 DeepMRMD:0.8543322;iRNA_m5C:0.00046328784299865 3014 chr1 3390014 3390014 1 + C T COAD 3390014 + 3389994 3390034 41 ATTGAGAGGCGGCCGGCGTGCGGGGGCCTGCCCATGCTCTC ATTGAGAGGCGGCCGGCGTGTGGGGGCCTGCCCATGCTCTC Direct Loss 0.968377062993365 0 0.94782174 0 prediction 0.936754125986731 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3390014 chr1:3390014 synonymous SNV . 0 21 hm5C_associated_SNPs_47694 0 0 1 0 2 Ribosome 0.500231643921092 0 0.89564348 0.000463287842184856 hm5C_site_3014 DeepMRMD:0.89564348;iRNA_m5C:0.000463287842184856 3015 chr17 79991921 79991921 1 + C A rs184321106 79991921 + 79991901 79991941 41 CCCTGGCCCCCGCCGGAGGCCGGGAGGGAGCAGGGTCTCCC CCCTGGCCCCCGCCGGAGGCAGGGAGGGAGCAGGGTCTCCC Direct Loss 0.96836241051178 0 0.922652 0 prediction 0.936724821023559 Functional Loss - RAC3 ENSG00000169750 UTR3 Human protein_coding chr17:79991921 chr17:79991921 . . 0 21 hm5C_associated_SNPs_47695 0 0 1 0 0 Ribosome 0.500231643941411 0 0.845304 0.000463287882822572 hm5C_site_3015 DeepMRMD:0.845304;iRNA_m5C:0.000463287882822572 3016 chr16 75681685 75681685 1 + C T rs568180789 75681685 + 75681665 75681705 41 AGGCCCAGTGCTGCGCTTCGCGGCAGAGGCGTCTGCGGTGA AGGCCCAGTGCTGCGCTTCGTGGCAGAGGCGTCTGCGGTGA Direct Loss 0.96835559555579 0 0.8521874 0 prediction 0.93671119111158 Functional Loss - TERF2IP ENSG00000166848 UTR5 Human protein_coding chr16:75681685 chr16:75681685 . . 0 21 hm5C_associated_SNPs_47696 0 0 1 0 0 Ribosome 0.500231641160517 0 0.7043748 0.000463282321033986 hm5C_site_3016 DeepMRMD:0.7043748;iRNA_m5C:0.000463282321033986 3017 chr17 79991820 79991820 1 + C G rs116150248 79991820 + 79991800 79991840 41 GGGGAGCGGTGGGGGTGGGCCGGGGGGAAGCATGGGGATGA GGGGAGCGGTGGGGGTGGGCGGGGGGGAAGCATGGGGATGA Direct Loss 0.9683480938038 0 0.91276056 0 prediction 0.936696187607601 Functional Loss - RAC3 ENSG00000169750 UTR3 Human protein_coding chr17:79991820 chr17:79991820 . . 0 21 hm5C_associated_SNPs_47697 0 0 1 0 0 Ribosome 0.500231661236447 0 0.82552112 0.000463322472894934 hm5C_site_3017 DeepMRMD:0.82552112;iRNA_m5C:0.000463322472894934 3018 chr9 131679232 131679232 1 + C T rs547486309 131679232 + 131679212 131679252 41 GGGCTCTGCGGTGCGGTCCACGGGAGAGCAGGCCTCCAGCT GGGCTCTGCGGTGCGGTCCATGGGAGAGCAGGCCTCCAGCT Direct Loss 0.968333067740777 0 0.88987947 0 prediction 0.936666135481555 Functional Loss - LRRC8A ENSG00000136802 UTR3 Human protein_coding chr9:131679232 chr9:131679232 . . 0 21 hm5C_associated_SNPs_47698 0 0 1 0 0 Endoplasmic reticulum 0.500231643921046 0 0.77975894 0.00046328784209293 hm5C_site_3018 DeepMRMD:0.77975894;iRNA_m5C:0.00046328784209293 3019 chr1 152759984 152759984 1 + C A LIHC 152759984 + 152759964 152760004 41 CTCTGGGGGCTGCTGCAGCTCTGGGGGAGGTGGCTGCTGCC CTCTGGGGGCTGCTGCAGCTATGGGGGAGGTGGCTGCTGCC Direct Loss 0.96833097614896 0 0.8829341 0 prediction 0.93666195229792 Functional Loss - LCE1E ENSG00000186226 CDS Human protein_coding chr1:152759984 chr1:152759984 nonsynonymous SNV 0.915 2 21 hm5C_associated_SNPs_47699 0 0 0 0 0 unknown 0.500231643921092 0 0.7658682 0.000463287842184856 hm5C_site_3019 DeepMRMD:0.7658682;iRNA_m5C:0.000463287842184856 3020 chr17 79633801 79633801 1 + C T KICH 79633801 + 79633781 79633821 41 GCCTCCCGGCGTGGAGATGGCGGGAGCTGGTCGCGGAGCAG GCCTCCCGGCGTGGAGATGGTGGGAGCTGGTCGCGGAGCAG Direct Loss 0.968328266363272 0 0.8902472 0 prediction 0.936656532726544 Functional Loss - CCDC137 ENSG00000185298 CDS Human protein_coding chr17:79633801 chr17:79633801 nonsynonymous SNV 0.015 2 21 hm5C_associated_SNPs_47700 0 0 1 0 0 Ribosome 0.500231643269208 0 0.7804944 0.000463286538416652 hm5C_site_3020 DeepMRMD:0.7804944;iRNA_m5C:0.000463286538416652 3021 chr14 94395378 94395378 1 + C A LUAD 94395378 + 94395358 94395398 41 AGGAAGAGCCCAGCCTTTCCCGGGGAGCTGGCGCACCTCTG AGGAAGAGCCCAGCCTTTCCAGGGGAGCTGGCGCACCTCTG Direct Loss 0.968299862252957 0 0.9516112 0 prediction 0.936599724505913 Functional Loss - FAM181A ENSG00000140067 CDS Human protein_coding chr14:94395378 chr14:94395378 synonymous SNV . 0 21 hm5C_associated_SNPs_47701 0 0 0 0 0 exosome 0.500231643921092 0 0.9032224 0.000463287842184856 hm5C_site_3021 DeepMRMD:0.9032224;iRNA_m5C:0.000463287842184856 3022 chr1 167086612 167086612 1 + C T CESC 167086612 + 167086592 167086632 41 ACGCAGAGTGTCCAGGCATGCTGGAGTCTGCTGAACAGCTG ACGCAGAGTGTCCAGGCATGTTGGAGTCTGCTGAACAGCTG Direct Loss 0.968290932024203 0 0.4902104 0 prediction 0.936581864048405 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167086612 chr1:167086612 synonymous SNV . 0 21 hm5C_associated_SNPs_47702 0 0 0 0 1 Endoplasmic reticulum 0.500240781881327 0 0 0.000481563762653625 hm5C_site_3022 DeepMRMD:0;iRNA_m5C:0.000481563762653625 3023 chr19 14150702 14150702 1 + C T BLCA 14150702 + 14150682 14150722 41 AGTTCCACTACCGAAGATGTCAGGAGGCGGCCTGGACCCTG AGTTCCACTACCGAAGATGTTAGGAGGCGGCCTGGACCCTG Direct Loss 0.968276567737391 0 0.90528584 0 prediction 0.936553135474781 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14150702 chr19:14150702 stopgain 0.201 0 21 hm5C_associated_SNPs_47703 0 0 0 0 1 chromatin 0.500231643921042 0 0.81057168 0.000463287842084048 hm5C_site_3023 DeepMRMD:0.81057168;iRNA_m5C:0.000463287842084048 3024 chr12 57858597 57858597 1 + C T UCEC 57858597 + 57858577 57858617 41 CCTCGTAGCTTTCATCAACTCGCGATGCACATCTCCAGGAG CCTCGTAGCTTTCATCAACTTGCGATGCACATCTCCAGGAG Direct Loss 0.968266346543426 0 0.285864 0 prediction 0.936532693086852 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57858597 chr12:57858597 nonsynonymous SNV 0.843 3 21 hm5C_associated_SNPs_47704 0 0 0 0 0 nucleoplasm 0.500231662626603 0 0 0.000463325253205582 hm5C_site_3024 DeepMRMD:0;iRNA_m5C:0.000463325253205582 3025 chr2 219824667 219824667 1 + C G rs200705478 219824667 + 219824647 219824687 41 GCTGGGGGGCTACGGGGCGCCGCCAGTGGGCAAGGGCGGCA GCTGGGGGGCTACGGGGCGCGGCCAGTGGGCAAGGGCGGCA Direct Loss 0.968265412817829 0 0.90183556 0 prediction 0.936530825635657 Functional Loss - CDK5R2 ENSG00000171450 CDS Human protein_coding chr2:219824667 chr2:219824667 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_47705 0 0 0 0 0 Cytosol 0.500231643921092 0 0.80367112 0.000463287842184856 hm5C_site_3025 DeepMRMD:0.80367112;iRNA_m5C:0.000463287842184856 3026 chr5 179023632 179023632 1 + C T UCEC 179023632 + 179023612 179023652 41 AAGCTGCAGCAGGAGCTGGGCGGGAGGATCGGCGCCCTGCA AAGCTGCAGCAGGAGCTGGGTGGGAGGATCGGCGCCCTGCA Direct Loss 0.968264472543972 0 0.9333644 0 prediction 0.936528945087944 Functional Loss - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179023632 chr5:179023632 synonymous SNV . 0 21 hm5C_associated_SNPs_47706 0 0 1 0 2 Ribosome 0.500231643921093 0 0.8667288 0.000463287842186633 hm5C_site_3026 DeepMRMD:0.8667288;iRNA_m5C:0.000463287842186633 Clostridium difficile infection in multiple myeloma 3027 chr22 43435856 43435856 1 + G T KIRC 43435856 - 43435836 43435876 41 ACCGGGAGCTGAGAAGCCGTCAGGGTCAGTCTCTGGGGCCC ACCGGGAGCTGAGAAGCCGTAAGGGTCAGTCTCTGGGGCCC Direct Loss 0.968230952425538 0 0.90366316 0 prediction 0.936461904851076 Functional Loss - TTLL1 ENSG00000100271 CDS Human protein_coding chr22:43435856 chr22:43435856 nonsynonymous SNV 0.011 0 21 hm5C_associated_SNPs_47707 0 0 0 0 1 Nucleus 0.500231643921092 0 0.80732632 0.000463287842184856 hm5C_site_3027 DeepMRMD:0.80732632;iRNA_m5C:0.000463287842184856 3028 chr11 59225307 59225307 1 + C A LUAD 59225307 + 59225287 59225327 41 TCATCTATTCCCTGAGAAATCAAGAGATGAAGTCAGCCATG TCATCTATTCCCTGAGAAATAAAGAGATGAAGTCAGCCATG Direct Loss 0.968229247594909 0 0.89236754 0 prediction 0.936458495189818 Functional Loss - OR4D6 ENSG00000166884 CDS Human protein_coding chr11:59225307 chr11:59225307 nonsynonymous SNV 0.676 0 21 hm5C_associated_SNPs_47708 0 0 0 0 0 unknown 0.50023164452216 0 0.78473508 0.000463289044319026 hm5C_site_3028 DeepMRMD:0.78473508;iRNA_m5C:0.000463289044319026 3029 chr14 105715170 105715170 1 + C G rs186857534 105715170 + 105715150 105715190 41 GGCGCGGGGCGCGGCGTCCACAGGCGCCGAGGCTGCCCCCG GGCGCGGGGCGCGGCGTCCAGAGGCGCCGAGGCTGCCCCCG Direct Loss 0.968224677906665 0 0.90759575 0 prediction 0.936449355813331 Functional Loss - BTBD6 ENSG00000184887;ENSG00000185024 UTR5 Human other chr14:105715170 chr14:105715170 . . 0 21 hm5C_associated_SNPs_47709 0 0 1 0 1 Cytosol 0.500231641160599 0 0.8151915 0.000463282321197189 hm5C_site_3029 DeepMRMD:0.8151915;iRNA_m5C:0.000463282321197189 3030 chrX 120181613 120181613 1 + C G rs576178181 120181613 + 120181593 120181633 41 CTGGGCTCCGCGGCCAACCACTCGGCCGCGTTGCTGGGCCG CTGGGCTCCGCGGCCAACCAGTCGGCCGCGTTGCTGGGCCG Direct Loss 0.968223701525594 0 0.7170706 0 prediction 0.936447403051187 Functional Loss - GLUD2 ENSG00000182890 CDS Human protein_coding chrX:120181613 chrX:120181613 nonsynonymous SNV 0.010 1 21 hm5C_associated_SNPs_47710 0 0 0 0 0 Ribosome 0.500231634446363 0 0.4341412 0.000463268892726632 hm5C_site_3030 DeepMRMD:0.4341412;iRNA_m5C:0.000463268892726632 3031 chr2 97039157 97039157 1 + C T rs550147117 97039157 + 97039137 97039177 41 TGCCGGGACATCCCCAGTCTCGGGGGAAGAAGATGCCATGG TGCCGGGACATCCCCAGTCTTGGGGGAAGAAGATGCCATGG Direct Loss 0.968208912803513 0 0.96572936 0 prediction 0.936417825607027 Functional Loss - NCAPH ENSG00000121152 UTR3 Human protein_coding chr2:97039157 chr2:97039157 . . 0 21 hm5C_associated_SNPs_47711 0 0 0 0 0 Cytosol 0.500231643921086 0 0.93145872 0.000463287842172644 hm5C_site_3031 DeepMRMD:0.93145872;iRNA_m5C:0.000463287842172644 3032 chrX 138529207 138529207 1 + C T rs767320948 138529207 + 138529187 138529227 41 CAGCCGCAGGCTCCGAGTGCCGGCGCGGGCCACCCGGGTGG CAGCCGCAGGCTCCGAGTGCTGGCGCGGGCCACCCGGGTGG Direct Loss 0.968191335759643 0 0.79947186 0 prediction 0.936382671519285 Functional Loss - SRD5A1P1 ENSG00000232549 ncRNA_exonic Human processed_pseudogene chrX:138529207 chrX:138529207 . . 0 21 hm5C_associated_SNPs_47712 0 0 0 0 0 unknown 0.500231643040155 0 0.59894372 0.000463286080310432 hm5C_site_3032 DeepMRMD:0.59894372;iRNA_m5C:0.000463286080310432 3033 chr2 198570427 198570427 1 + C G BLCA 198570427 + 198570407 198570447 41 ACGAGCACGGGCTGAAGATTCAGCAGGCAGCAGCTACCGCG ACGAGCACGGGCTGAAGATTGAGCAGGCAGCAGCTACCGCG Direct Loss 0.968179289201592 0 0.6070964 0 prediction 0.936358578403185 Functional Loss - MARS2 ENSG00000247626 CDS Human protein_coding chr2:198570427 chr2:198570427 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_47713 0 0 1 0 0 Ribosome 0.500231641897866 0 0.2141928 0.000463283795732794 hm5C_site_3033 DeepMRMD:0.2141928;iRNA_m5C:0.000463283795732794 3034 chr17 37819335 37819335 1 + C G rs15968 37819335 + 37819315 37819355 41 GCAGGCTGTGGGGTGGAGCACTGGACTCCGGGGCCCCACTG GCAGGCTGTGGGGTGGAGCAGTGGACTCCGGGGCCCCACTG Direct Loss 0.968172081505746 0 0.87729406 0 prediction 0.936344163011491 Functional Loss - STARD3 ENSG00000131748 UTR3 Human protein_coding chr17:37819335 chr17:37819335 . . 0 21 hm5C_associated_SNPs_47714 0 0 1 0 0 Ribosome 0.500231643921092 0 0.75458812 0.000463287842184856 hm5C_site_3034 DeepMRMD:0.75458812;iRNA_m5C:0.000463287842184856 3035 chr22 38271929 38271929 1 + C T SKCM 38271929 + 38271909 38271949 41 ATTTGATGATGCGTCGTTACCAGGATGCCATCCGGGTCTTC ATTTGATGATGCGTCGTTACTAGGATGCCATCCGGGTCTTC Direct Loss 0.96815196396298 0 0.9182489 0 prediction 0.93630392792596 Functional Loss - EIF3L ENSG00000100129 CDS Human protein_coding chr22:38271929 chr22:38271929 stopgain 1.000 1 21 hm5C_associated_SNPs_47715 0 0 1 0 1 Cytosol 0.500231643229311 0 0.8364978 0.000463286458622258 hm5C_site_3035 DeepMRMD:0.8364978;iRNA_m5C:0.000463286458622258 3036 chr10 12198980 12198980 1 + C T CESC 12198980 + 12198960 12199000 41 CGGACAAAGTCCGAGCTTTACGGGAGGCTTTTTATCGGCAG CGGACAAAGTCCGAGCTTTATGGGAGGCTTTTTATCGGCAG Direct Loss 0.968143585757668 0 0.84664744 0 prediction 0.936287171515335 Functional Loss - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12198980 chr10:12198980 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_47716 0 0 1 0 2 Ribosome 0.500231643921092 0 0.69329488 0.000463287842184856 hm5C_site_3036 DeepMRMD:0.69329488;iRNA_m5C:0.000463287842184856 3037 chr8 24254921 24254921 1 + C T GBM 24254921 + 24254901 24254941 41 TGTGGTGTGAAGAGCACTGACGGGAAACAAGGCCCAATTCG TGTGGTGTGAAGAGCACTGATGGGAAACAAGGCCCAATTCG Direct Loss 0.968136028874867 0 0.7991785 0 prediction 0.936272057749734 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24254921 chr8:24254921 synonymous SNV . 0 21 hm5C_associated_SNPs_47717 0 0 0 0 1 exosome 0.500231643321688 0 0.598357 0.000463286643376914 hm5C_site_3037 DeepMRMD:0.598357;iRNA_m5C:0.000463286643376914 3038 chr3 196387064 196387064 1 + C T BLCA 196387064 + 196387044 196387084 41 TCGAGGGCCTGGAGCGTCTCCGGGAGCTGGATCTGCAGAGG TCGAGGGCCTGGAGCGTCTCTGGGAGCTGGATCTGCAGAGG Direct Loss 0.968117045099444 0 0.9319275 0 prediction 0.936234090198888 Functional Loss - NRROS ENSG00000174004 CDS Human protein_coding chr3:196387064 chr3:196387064 nonsynonymous SNV 0.075 0 21 hm5C_associated_SNPs_47718 0 0 0 0 0 chromatin 0.500231643950554 0 0.863855 0.000463287901108833 hm5C_site_3038 DeepMRMD:0.863855;iRNA_m5C:0.000463287901108833 3039 chr22 50962655 50962655 1 + C A STAD 50962655 + 50962635 50962675 41 GCCCCGAACAGGCCTGTGATCAGCAGCCGGGTTCGAAGCCC GCCCCGAACAGGCCTGTGATAAGCAGCCGGGTTCGAAGCCC Direct Loss 0.96810294596689 0 0.6453997 0 prediction 0.93620589193378 Functional Loss - SCO2 ENSG00000130489 CDS Human protein_coding chr22:50962655 chr22:50962655 synonymous SNV . 0 21 hm5C_associated_SNPs_47719 0 0 0 0 0 Ribosome 0.50023164374198 0 0.2907994 0.000463287483960295 hm5C_site_3039 DeepMRMD:0.2907994;iRNA_m5C:0.000463287483960295 3040 chrX 153609453 153609453 1 + C T COAD 153609453 + 153609433 153609473 41 GGGCTGGGCTGGGCCAGGATCGCCAGGTCCCGCTCTGGGGC GGGCTGGGCTGGGCCAGGATTGCCAGGTCCCGCTCTGGGGC Direct Loss 0.968101705125364 0 0.89506334 0 prediction 0.936203410250728 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153609453 chrX:153609453 nonsynonymous SNV 0.973 4 21 hm5C_associated_SNPs_47720 0 0 1 0 0 Ribosome 0.500231643921092 0 0.79012668 0.000463287842184856 hm5C_site_3040 DeepMRMD:0.79012668;iRNA_m5C:0.000463287842184856 3041 chr18 580859 580859 1 + C T HNSC 580859 + 580839 580879 41 AGATGATCGACGAAGCTGATCGGGATGGGGACGGCGAAGTG AGATGATCGACGAAGCTGATTGGGATGGGGACGGCGAAGTG Direct Loss 0.968097403550155 0 0.8549859 0 prediction 0.936194807100311 Functional Loss - CETN1 ENSG00000177143 CDS Human protein_coding chr18:580859 chr18:580859 nonsynonymous SNV 0.982 4 21 hm5C_associated_SNPs_47721 0 0 0 0 0 unknown 0.500231476314748 0 0.7099718 0.00046295262949636 hm5C_site_3041 DeepMRMD:0.7099718;iRNA_m5C:0.00046295262949636 3042 chr13 49795333 49795333 1 + C T CESC 49795333 + 49795313 49795353 41 GCTGCGAGGCCCGGCCGCCTCGGGGCGGGAGAGAGGCCACC GCTGCGAGGCCCGGCCGCCTTGGGGCGGGAGAGAGGCCACC Direct Loss 0.968053960130161 0 0.91273534 0 prediction 0.936107920260323 Functional Loss - MLNR ENSG00000102539 CDS Human protein_coding chr13:49795333 chr13:49795333 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47722 0 0 0 0 1 exosome 0.500231643921092 0 0.82547068 0.000463287842184856 hm5C_site_3042 DeepMRMD:0.82547068;iRNA_m5C:0.000463287842184856 3043 chr5 112043282 112043282 1 + C A rs79896135 112043282 + 112043262 112043302 41 CCGGAAGCCTAGCCGCTGCTCGGGGGGGACCTGCGGGCTCA CCGGAAGCCTAGCCGCTGCTAGGGGGGGACCTGCGGGCTCA Direct Loss 0.968029318873886 0 0.94723713 0 prediction 0.936058637747773 Functional Loss - APC ENSG00000134982 UTR5 Human protein_coding chr5:112043282 chr5:112043282 . . 0 21 hm5C_associated_SNPs_47723 0 0 0 0 0 Cytosol 0.500231643921092 0 0.89447426 0.000463287842184856 hm5C_site_3043 DeepMRMD:0.89447426;iRNA_m5C:0.000463287842184856 3044 chr3 152880648 152880648 1 + C T LUAD 152880648 + 152880628 152880668 41 CGCCGTCGGTGCTGGAGATCCTGGATACGGCGGGCACCGAG CGCCGTCGGTGCTGGAGATCTTGGATACGGCGGGCACCGAG Direct Loss 0.968024005283 0 0.59661657 0 prediction 0.936048010566001 Functional Loss - RAP2B ENSG00000181467 CDS Human protein_coding chr3:152880648 chr3:152880648 synonymous SNV . 0 21 hm5C_associated_SNPs_47724 0 0 1 0 0 Ribosome 0.500231642234442 0 0.19323314 0.000463284468883884 hm5C_site_3044 DeepMRMD:0.19323314;iRNA_m5C:0.000463284468883884 3045 chr8 18079746 18079746 1 + C T rs56379106 18079746 + 18079726 18079766 41 ATCAAGTTGTGAGAAGAAATCGGGGTGGATGGTGTCTCCAG ATCAAGTTGTGAGAAGAAATTGGGGTGGATGGTGTCTCCAG Direct Loss 0.968005932538882 0 0.94527566 0 prediction 0.936011865077765 Functional Loss - NAT1 ENSG00000171428 CDS Human protein_coding chr8:18079746 chr8:18079746 nonsynonymous SNV 0.046 4 21 hm5C_associated_SNPs_47725 1 0 1 0 0 Cytosol 0.500231643921096 0 0.89055132 0.000463287842191518 hm5C_site_3045 DeepMRMD:0.89055132;iRNA_m5C:0.000463287842191518 not specified not specified 3046 chr19 36166854 36166854 1 + C T COAD 36166854 + 36166834 36166874 41 CCCACTGTGCTGTCGCCGGACGGGAAACTTCATCCCCCTCA CCCACTGTGCTGTCGCCGGATGGGAAACTTCATCCCCCTCA Direct Loss 0.968002074061759 0 0.43032098 0 prediction 0.936004148123518 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36166854 chr19:36166854 nonsynonymous SNV 0.885 2 21 hm5C_associated_SNPs_47726 0 0 0 0 1 exosome 0.500231643921093 0 0 0.000463287842185078 hm5C_site_3046 DeepMRMD:0;iRNA_m5C:0.000463287842185078 3047 chr16 77760618 77760618 1 + C G rs545413751 77760618 + 77760598 77760638 41 GCAGGAGAAACACTTGAAACCAGGAGGCGGAGGTTGCAGTG GCAGGAGAAACACTTGAAACGAGGAGGCGGAGGTTGCAGTG Direct Loss 0.967989985626951 0 0.8979807 0 prediction 0.935979971253903 Functional Loss - NUDT7 ENSG00000140876 intronic Human protein_coding chr16:77760618 chr16:77760618 . . 0 21 hm5C_associated_SNPs_47727 0 0 0 0 0 nucleoplasm 0.500231643461026 0 0.7959614 0.000463286922051331 hm5C_site_3047 DeepMRMD:0.7959614;iRNA_m5C:0.000463286922051331 3048 chr2 238990408 238990408 1 + C T COAD 238990408 + 238990388 238990428 41 GCAGAGGTGGACGACATCCTCGCGGCAGTCCGCCCGACCAC GCAGAGGTGGACGACATCCTTGCGGCAGTCCGCCCGACCAC Direct Loss 0.967971466645873 0 0.89466614 0 prediction 0.935942933291746 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990408 chr2:238990408 synonymous SNV . 0 21 hm5C_associated_SNPs_47728 0 0 1 0 2 Ribosome 0.500231684958785 0 0.78933228 0.000463369917569345 hm5C_site_3048 DeepMRMD:0.78933228;iRNA_m5C:0.000463369917569345 3049 chr21 34602261 34602261 1 + C T rs17860248 34602261 + 34602241 34602281 41 CCGTATCGCTCCTCGTAGGCCGGGGCTCGGCGCGCGCACCC CCGTATCGCTCCTCGTAGGCTGGGGCTCGGCGCGCGCACCC Direct Loss 0.967969592127387 0 0.9194429 0 prediction 0.935939184254774 Functional Loss - IFNAR2 ENSG00000159110 UTR5 Human protein_coding chr21:34602261 chr21:34602261 . . 0 21 hm5C_associated_SNPs_47729 0 0 1 0 0 Ribosome 0.500233497043948 0 0.8388858 0.000466994087896744 hm5C_site_3049 DeepMRMD:0.8388858;iRNA_m5C:0.000466994087896744 3050 chr4 111397731 111397731 1 + C T ESCA 111397731 + 111397711 111397751 41 GGACGGCGGGCCGGGCACTGCGCCAGCTCCTTCCCACCTGC GGACGGCGGGCCGGGCACTGTGCCAGCTCCTTCCCACCTGC Direct Loss 0.967941535614624 0 0.7366205 0 prediction 0.935883071229248 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111397731 chr4:111397731 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_47730 0 0 0 0 0 exosome 0.50023164426436 0 0.473241 0.000463288528719019 hm5C_site_3050 DeepMRMD:0.473241;iRNA_m5C:0.000463288528719019 3051 chr1 156348012 156348012 1 + C T STAD 156348012 + 156347992 156348032 41 CAGGAGCGTGGGGGTGGGGGCGGGGTGCTGCCTCTCACCCC CAGGAGCGTGGGGGTGGGGGTGGGGTGCTGCCTCTCACCCC Direct Loss 0.9679273209569 0 0.9194089 0 prediction 0.935854641913801 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348012 chr1:156348012 synonymous SNV . 0 21 hm5C_associated_SNPs_47731 0 0 1 0 0 Cytosol 0.500231643921092 0 0.8388178 0.000463287842184856 hm5C_site_3051 DeepMRMD:0.8388178;iRNA_m5C:0.000463287842184856 3052 chr19 35556910 35556910 1 + C T UCEC 35556910 + 35556890 35556930 41 ACACCAAAGTCAGTGACTTCCGGGAGTGGATCTTCCAGGCC ACACCAAAGTCAGTGACTTCTGGGAGTGGATCTTCCAGGCC Direct Loss 0.96792572229882 0 0.915477 0 prediction 0.93585144459764 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35556910 chr19:35556910 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_47732 0 0 0 0 1 cytosol 0.500048361232734 0 0.830954 9.67224654686571e-05 hm5C_site_3052 DeepMRMD:0.830954;iRNA_m5C:9.67224654686571e-05 3053 chr4 111397979 111397979 1 + C T COAD 111397979 + 111397959 111397999 41 GGTACCTGTGGCTGCACCTCCGGGAGACCAGGATCACCCGG GGTACCTGTGGCTGCACCTCTGGGAGACCAGGATCACCCGG Direct Loss 0.967920903690264 0 0.9558375 0 prediction 0.935841807380528 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111397979 chr4:111397979 nonsynonymous SNV 0.394 3 21 hm5C_associated_SNPs_47733 0 0 0 0 0 exosome 0.50023164389486 0 0.911675 0.000463287789720379 hm5C_site_3053 DeepMRMD:0.911675;iRNA_m5C:0.000463287789720379 3054 chr8 143558811 143558811 1 + C T STAD 143558811 + 143558791 143558831 41 GCACCTGTGGCCGTGGCTTTCGGGATCGCACGCGCACCTGC GCACCTGTGGCCGTGGCTTTTGGGATCGCACGCGCACCTGC Direct Loss 0.96791377463536 0 0.94154143 0 prediction 0.93582754927072 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143558811 chr8:143558811 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_47734 0 0 0 0 2 Nucleus 0.500231650762109 0 0.88308286 0.00046330152421703 hm5C_site_3054 DeepMRMD:0.88308286;iRNA_m5C:0.00046330152421703 3055 chr7 44240649 44240649 1 + C T rs534339905 44240649 + 44240629 44240669 41 GCTGAGAGGCCGGTAGGCGGCGGCGGTCCCGAGGGGCGGCG GCTGAGAGGCCGGTAGGCGGTGGCGGTCCCGAGGGGCGGCG Direct Loss 0.96788926997891 0 0.9110213 0 prediction 0.93577853995782 Functional Loss - YKT6 ENSG00000106636 UTR5 Human protein_coding chr7:44240649 chr7:44240649 . . 0 21 hm5C_associated_SNPs_47735 0 0 1 0 0 Ribosome 0.500231716144024 0 0.8220426 0.000463432288048571 hm5C_site_3055 DeepMRMD:0.8220426;iRNA_m5C:0.000463432288048571 3056 chr17 18088053 18088053 1 + G A BLCA 18088053 - 18088033 18088073 41 CACCAGCTGGTGCACCCACTCGGGGATCTCGTCCACGTCGC CACCAGCTGGTGCACCCACTTGGGGATCTCGTCCACGTCGC Direct Loss 0.967876011787528 0 0.9510463 0 prediction 0.935752023575055 Functional Loss - ALKBH5 ENSG00000091542 CDS Human protein_coding chr17:18088053 chr17:18088053 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_47736 0 0 0 0 0 Cytosol 0.500231643921092 0 0.9020926 0.000463287842184856 hm5C_site_3056 DeepMRMD:0.9020926;iRNA_m5C:0.000463287842184856 3057 chr1 84764244 84764244 1 + C T LGG 84764244 + 84764224 84764264 41 AACCTCCCGGCGCGGCCATGCGGGGAGGTAAGTGATCTGCC AACCTCCCGGCGCGGCCATGTGGGGAGGTAAGTGATCTGCC Direct Loss 0.967871343326046 0 0.938321 0 prediction 0.935742686652092 Functional Loss - SAMD13 ENSG00000203943 CDS Human protein_coding chr1:84764244 chr1:84764244 nonsynonymous SNV 0.689 2 21 hm5C_associated_SNPs_47737 0 0 0 0 1 nucleus 0.500231643921062 0 0.876642 0.000463287842124238 hm5C_site_3057 DeepMRMD:0.876642;iRNA_m5C:0.000463287842124238 3058 chr10 115804689 115804689 1 + C T STAD 115804689 + 115804669 115804709 41 AGCTGCGAGCGCCGTTTCCTCGGCGGCCCAGCGCGGCCGCC AGCTGCGAGCGCCGTTTCCTTGGCGGCCCAGCGCGGCCGCC Direct Loss 0.967866839057317 0 0.90591276 0 prediction 0.935733678114634 Functional Loss - ADRB1 ENSG00000043591 CDS Human protein_coding chr10:115804689 chr10:115804689 synonymous SNV . 0 21 hm5C_associated_SNPs_47738 0 0 0 0 0 Nucleus 0.500231649340175 0 0.81182552 0.000463298680349666 hm5C_site_3058 DeepMRMD:0.81182552;iRNA_m5C:0.000463298680349666 3059 chr19 35551628 35551628 1 + C G KIRC 35551628 + 35551608 35551648 41 GGGTGCAGGCTGTGGTCTACCACGGGGGCTATCTTCCCTTT GGGTGCAGGCTGTGGTCTACGACGGGGGCTATCTTCCCTTT Direct Loss 0.967852325614617 0 0.83634514 0 prediction 0.935704651229234 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35551628 chr19:35551628 nonsynonymous SNV 0.789 5 21 hm5C_associated_SNPs_47739 0 0 1 0 2 cytosol 0.500231643921093 0 0.67269028 0.000463287842185078 hm5C_site_3059 DeepMRMD:0.67269028;iRNA_m5C:0.000463287842185078 3060 chr6 146865253 146865253 1 + C T KIRC 146865253 + 146865233 146865273 41 CGCCTGCAGCTGTGGGACATCGCGGGTAAGCGCGGCCGCGA CGCCTGCAGCTGTGGGACATTGCGGGTAAGCGCGGCCGCGA Direct Loss 0.967845075839029 0 0.92915285 0 prediction 0.935690151678058 Functional Loss - RAB32 ENSG00000118508 CDS Human protein_coding chr6:146865253 chr6:146865253 synonymous SNV . 0 21 hm5C_associated_SNPs_47740 0 0 1 0 1 Ribosome 0.500231643921331 0 0.8583057 0.000463287842661142 hm5C_site_3060 DeepMRMD:0.8583057;iRNA_m5C:0.000463287842661142 3061 chr6 150070893 150070893 1 + C T UCEC 150070893 + 150070873 150070913 41 GCGCGCAGTGGCGGCAGCGGCGGCGACGGCAGTAACAGCGG GCGCGCAGTGGCGGCAGCGGTGGCGACGGCAGTAACAGCGG Direct Loss 0.967827641101029 0 0.8902774 0 prediction 0.935655282202059 Functional Loss - PCMT1 ENSG00000120265 CDS Human protein_coding chr6:150070893 chr6:150070893 synonymous SNV . 0 21 hm5C_associated_SNPs_47741 0 0 1 0 0 Ribosome 0.500231643915238 0 0.7805548 0.000463287830476 hm5C_site_3061 DeepMRMD:0.7805548;iRNA_m5C:0.000463287830476 3062 chr5 140616268 140616268 1 + C T rs200357162 140616268 + 140616248 140616288 41 TTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTC TTCGTGGCGGTGCGGCTGTGTAGGAGGAGCAGGGCGGCCTC Direct Loss 0.967808606735453 0 0.9110083 0 prediction 0.935617213470906 Functional Loss - PCDHB18P ENSG00000146001 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:140616268 chr5:140616268 . . 0 21 hm5C_associated_SNPs_47742 0 0 0 0 0 unknown 0.500231643921217 0 0.8220166 0.000463287842433324 hm5C_site_3062 DeepMRMD:0.8220166;iRNA_m5C:0.000463287842433324 3063 chr21 45223708 45223708 1 + C T rs73906621 45223708 + 45223688 45223728 41 GCCAGGCCTCGCTTGCACCGCGGGACGAGGCTGACCGGGCT GCCAGGCCTCGCTTGCACCGTGGGACGAGGCTGACCGGGCT Direct Loss 0.967806145065469 0 0.89355356 0 prediction 0.935612290130939 Functional Loss - RRP1 ENSG00000160214 UTR3 Human protein_coding chr21:45223708 chr21:45223708 . . 0 21 hm5C_associated_SNPs_47743 0 0 1 0 0 Ribosome 0.500231643920936 0 0.78710712 0.000463287841872662 hm5C_site_3063 DeepMRMD:0.78710712;iRNA_m5C:0.000463287841872662 3064 chr16 50745443 50745443 1 + C T SKCM 50745443 + 50745423 50745463 41 GTCTGGGACCCAGTCTTCTTCGGGGCCGCCTCCCCACCCTC GTCTGGGACCCAGTCTTCTTTGGGGCCGCCTCCCCACCCTC Direct Loss 0.967799316316787 0 0.9588161 0 prediction 0.935598632633574 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50745443 chr16:50745443 nonsynonymous SNV 0.010 2 21 hm5C_associated_SNPs_47744 0 0 0 0 0 exosome 0.500231643921092 0 0.9176322 0.000463287842184856 hm5C_site_3064 DeepMRMD:0.9176322;iRNA_m5C:0.000463287842184856 3065 chr8 55371779 55371779 1 + C T COAD 55371779 + 55371759 55371799 41 GGGTGGAGGGCGGCTTCCTGCACGGCCTGGCTGAGCCGCAG GGGTGGAGGGCGGCTTCCTGTACGGCCTGGCTGAGCCGCAG Direct Loss 0.967794391497465 0 0.38313165 0 prediction 0.93558878299493 Functional Loss - SOX17 ENSG00000164736 CDS Human protein_coding chr8:55371779 chr8:55371779 nonsynonymous SNV 0.979 4 21 hm5C_associated_SNPs_47745 0 0 0 0 0 Cytosol 0.500231643924868 0 0 0.000463287849735261 hm5C_site_3065 DeepMRMD:0;iRNA_m5C:0.000463287849735261 3066 chr11 114310284 114310284 1 + C T UCEC 114310284 + 114310264 114310304 41 CCCTGGGCTCCAGGCTGTTGCGGGGTGTAGGTGGGAGTCAC CCCTGGGCTCCAGGCTGTTGTGGGGTGTAGGTGGGAGTCAC Direct Loss 0.967786310456087 0 0.92789716 0 prediction 0.935572620912173 Functional Loss - REXO2 ENSG00000076043 CDS Human protein_coding chr11:114310284 chr11:114310284 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_47746 0 0 1 0 0 Ribosome 0.500231643921092 0 0.85579432 0.000463287842184856 hm5C_site_3066 DeepMRMD:0.85579432;iRNA_m5C:0.000463287842184856 3067 chr19 54695795 54695795 1 + C T BRCA 54695795 + 54695775 54695815 41 GACCAGTGATGGCCAGGCTTCGGGAGAGCAGGAGGAAGCTG GACCAGTGATGGCCAGGCTTTGGGAGAGCAGGAGGAAGCTG Direct Loss 0.967763946696483 0 0.9018655 0 prediction 0.935527893392967 Functional Loss - TSEN34 ENSG00000170892 CDS Human protein_coding chr19:54695795 chr19:54695795 nonsynonymous SNV 0.960 0 21 hm5C_associated_SNPs_47747 0 0 1 0 1 Ribosome 0.500231643921092 0 0.803731 0.000463287842184856 hm5C_site_3067 DeepMRMD:0.803731;iRNA_m5C:0.000463287842184856 3068 chr7 53103753 53103753 1 + C A LUAD 53103753 + 53103733 53103773 41 GCTGTGTCGTGCCTGGAACCCAGGACGGACCTGGAGCCCGG GCTGTGTCGTGCCTGGAACCAAGGACGGACCTGGAGCCCGG Direct Loss 0.967753883243179 0 0.7733666 0 prediction 0.935507766486359 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103753 chr7:53103753 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_47748 0 0 0 0 0 unknown 0.500231641932143 0 0.5467332 0.000463283864286179 hm5C_site_3068 DeepMRMD:0.5467332;iRNA_m5C:0.000463283864286179 3069 chr8 8860644 8860644 1 + C G rs61736769 8860644 + 8860624 8860664 41 GCTGCTGGAGTCGCCGCGGCCGGAGGGCGGGGAGGAGCCGC GCTGCTGGAGTCGCCGCGGCGGGAGGGCGGGGAGGAGCCGC Direct Loss 0.967746922105595 0 0.92206955 0 prediction 0.93549384421119 Functional Loss - ERI1 ENSG00000104626 CDS Human protein_coding chr8:8860644 chr8:8860644 nonsynonymous SNV 0.008 1 21 hm5C_associated_SNPs_47749 0 0 1 0 1 Ribosome 0.500231643921092 0 0.8441391 0.000463287842184856 hm5C_site_3069 DeepMRMD:0.8441391;iRNA_m5C:0.000463287842184856 3070 chr6 139095001 139095001 1 + C T PRAD 139095001 + 139094981 139095021 41 CTGAGGCTGTCGGGTCTTTGCGGGTTGCGGAAGGGGGCCCC CTGAGGCTGTCGGGTCTTTGTGGGTTGCGGAAGGGGGCCCC Direct Loss 0.967711505962842 0 0.9098538 0 prediction 0.935423011925684 Functional Loss - CCDC28A ENSG00000024862 CDS Human protein_coding chr6:139095001 chr6:139095001 nonsynonymous SNV 0.017 2 21 hm5C_associated_SNPs_47750 0 0 1 0 1 Ribosome 0.500231643910655 0 0.8197076 0.000463287821309777 hm5C_site_3070 DeepMRMD:0.8197076;iRNA_m5C:0.000463287821309777 3071 chr12 75875739 75875739 1 + C T LGG 75875739 + 75875719 75875759 41 ACTTCACTGGGAGAGAACATCTGGACTGGGTCTGTGCCCAT ACTTCACTGGGAGAGAACATTTGGACTGGGTCTGTGCCCAT Direct Loss 0.967710832688253 0 0.60345936 0 prediction 0.935421665376506 Functional Loss - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75875739 chr12:75875739 synonymous SNV . 0 21 hm5C_associated_SNPs_47751 0 0 0 0 0 Endoplasmic reticulum 0.500231642991981 0 0.20691872 0.000463285983961281 hm5C_site_3071 DeepMRMD:0.20691872;iRNA_m5C:0.000463285983961281 3072 chr17 40673115 40673115 1 + C T UCEC 40673115 + 40673095 40673135 41 CCTTCTCCTTCGAGCATATTCGGGAAGGGAAGTTTGAAGAG CCTTCTCCTTCGAGCATATTTGGGAAGGGAAGTTTGAAGAG Direct Loss 0.967702525881944 0 0.9185106 0 prediction 0.935405051763887 Functional Loss - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40673115 chr17:40673115 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_47752 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8370212 0.000463287842184856 hm5C_site_3072 DeepMRMD:0.8370212;iRNA_m5C:0.000463287842184856 3073 chr2 232262921 232262921 1 + C T PRAD 232262921 + 232262901 232262941 41 GGGCCGCGAGCGGCAGTCCGCGGGTGGGGGCCGAGGCGCCG GGGCCGCGAGCGGCAGTCCGTGGGTGGGGGCCGAGGCGCCG Direct Loss 0.967696189781551 0 0.9202059 0 prediction 0.935392379563101 Functional Loss - B3GNT7 ENSG00000156966 CDS Human protein_coding chr2:232262921 chr2:232262921 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47753 0 0 0 0 0 exosome 0.500231643921067 0 0.8404118 0.00046328784213423 hm5C_site_3073 DeepMRMD:0.8404118;iRNA_m5C:0.00046328784213423 3074 chr1 47279175 47279175 1 + C T rs4646487 47279175 + 47279155 47279195 41 ACAAGTGGGAAGAGAAAGCTCGGGAGGGTAAGTCCTTTGAC ACAAGTGGGAAGAGAAAGCTTGGGAGGGTAAGTCCTTTGAC Direct Loss 0.967693078614088 0 0.90651417 0 prediction 0.935386157228176 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47279175 chr1:47279175 nonsynonymous SNV 0.361 2 21 hm5C_associated_SNPs_47754 0 0 0 0 1 exosome 0.500231643921092 0 0.81302834 0.000463287842184856 hm5C_site_3074 DeepMRMD:0.81302834;iRNA_m5C:0.000463287842184856 3075 chr19 5778644 5778644 1 + C T UCEC 5778644 + 5778624 5778664 41 CAGGGCAGGCACAGAGCCCCCGGGACGCCACCGCACTCCTC CAGGGCAGGCACAGAGCCCCTGGGACGCCACCGCACTCCTC Direct Loss 0.967654647452597 0 0.9071871 0 prediction 0.935309294905193 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5778644 chr19:5778644 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47755 0 0 0 0 0 nucleus 0.50023164391239 0 0.8143742 0.00046328782477989 hm5C_site_3075 DeepMRMD:0.8143742;iRNA_m5C:0.00046328782477989 3076 chr1 109777925 109777925 1 + C T UCEC 109777925 + 109777905 109777945 41 AGCCCATTGCTGCCCTGCACCGGGATGAGTGGCTCCGGCCG AGCCCATTGCTGCCCTGCACTGGGATGAGTGGCTCCGGCCG Direct Loss 0.967645923475711 0 0.93627787 0 prediction 0.935291846951422 Functional Loss - SARS ENSG00000031698 CDS Human protein_coding chr1:109777925 chr1:109777925 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_47756 0 0 1 0 1 Ribosome 0.500231643920369 0 0.87255574 0.000463287840737348 hm5C_site_3076 DeepMRMD:0.87255574;iRNA_m5C:0.000463287840737348 3077 chr9 12775777 12775777 1 + C T STAD 12775777 + 12775757 12775797 41 AAGCTGGGGCGCAAAGTACCCGAGAGTCTAGTGCGCTCTCT AAGCTGGGGCGCAAAGTACCTGAGAGTCTAGTGCGCTCTCT Direct Loss 0.967616850483226 0 0.85194874 0 prediction 0.935233700966452 Functional Loss - LURAP1L ENSG00000153714 CDS Human protein_coding chr9:12775777 chr9:12775777 synonymous SNV . 0 21 hm5C_associated_SNPs_47757 0 0 0 0 0 nucleus 0.50023164392108 0 0.70389748 0.000463287842159543 hm5C_site_3077 DeepMRMD:0.70389748;iRNA_m5C:0.000463287842159543 3078 chr1 100731936 100731936 1 + C T UCEC 100731936 + 100731916 100731956 41 CCCCAGGGTGTCCCCCATGGCGGGGCCGCGGGTGGAGGTCG CCCCAGGGTGTCCCCCATGGTGGGGCCGCGGGTGGAGGTCG Direct Loss 0.967610013080136 0 0.9056907 0 prediction 0.935220026160272 Functional Loss - RTCA ENSG00000137996 CDS Human protein_coding chr1:100731936 chr1:100731936 nonsynonymous SNV 0.797 0 21 hm5C_associated_SNPs_47758 0 0 1 0 1 Ribosome 0.500231642800896 0 0.8113814 0.000463285601792096 hm5C_site_3078 DeepMRMD:0.8113814;iRNA_m5C:0.000463285601792096 3079 chr4 1347003 1347003 1 + C T PRAD 1347003 + 1346983 1347023 41 GGTCTGGCACCCCTGACCCCCGGGACGGGGAGCAGCCCTGC GGTCTGGCACCCCTGACCCCTGGGACGGGGAGCAGCCCTGC Direct Loss 0.967600830677726 0 0.80388415 0 prediction 0.935201661355452 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1347003 chr4:1347003 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47759 0 0 1 0 0 Nucleus 0.500231643921093 0 0.6077683 0.000463287842186411 hm5C_site_3079 DeepMRMD:0.6077683;iRNA_m5C:0.000463287842186411 3080 chr8 48921026 48921026 1 + C T CESC 48921026 + 48921006 48921046 41 CAGGAGAAGATGGCGGTCTCCACAGGTCGGTTCCCGGGCCG CAGGAGAAGATGGCGGTCTCTACAGGTCGGTTCCCGGGCCG Direct Loss 0.967599847781369 0 0.82052445 0 prediction 0.935199695562739 Functional Loss - UBE2V2 ENSG00000169139 CDS Human protein_coding chr8:48921026 chr8:48921026 synonymous SNV . 0 21 hm5C_associated_SNPs_47760 0 0 1 0 1 Ribosome 0.500231643920897 0 0.6410489 0.000463287841793836 hm5C_site_3080 DeepMRMD:0.6410489;iRNA_m5C:0.000463287841793836 3081 chr17 68171276 68171276 1 + C T rs67120636 68171276 + 68171256 68171296 41 GTTGCAAATGGCTTTGGGAACGGGAAGAGTAAAGTCCACAC GTTGCAAATGGCTTTGGGAATGGGAAGAGTAAAGTCCACAC Direct Loss 0.967580686574182 0 0.8034754 0 prediction 0.935161373148365 Functional Loss - KCNJ2 ENSG00000123700 CDS Human protein_coding chr17:68171276 chr17:68171276 synonymous SNV . 0 21 hm5C_associated_SNPs_47761 2 0 0 0 0 exosome 0.500231643921092 0 0.6069508 0.000463287842184856 hm5C_site_3081 DeepMRMD:0.6069508;iRNA_m5C:0.000463287842184856 Andersen Tawil syndrome Andersen Tawil syndrome 3082 chr18 13826449 13826449 1 + C A HNSC 13826449 + 13826429 13826469 41 TGCCCGGGGCCAGCTCTGCGCGGCAGAGGACCAGCATGCAG TGCCCGGGGCCAGCTCTGCGAGGCAGAGGACCAGCATGCAG Direct Loss 0.9675543233319 0 0.59151614 0 prediction 0.935108646663799 Functional Loss - MC5R ENSG00000176136 CDS Human protein_coding chr18:13826449 chr18:13826449 synonymous SNV . 0 21 hm5C_associated_SNPs_47762 0 0 0 0 0 unknown 0.500231635701031 0 0.18303228 0.000463271402062926 hm5C_site_3082 DeepMRMD:0.18303228;iRNA_m5C:0.000463271402062926 3083 chr19 50357725 50357725 1 + C T LUSC 50357725 + 50357705 50357745 41 TCCTCACCTGGGCTCACCCTCGGGGGTCTGGCCGTGAGCGA TCCTCACCTGGGCTCACCCTTGGGGGTCTGGCCGTGAGCGA Direct Loss 0.967553858930426 0 0.9589544 0 prediction 0.935107717860852 Functional Loss - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50357725 chr19:50357725 synonymous SNV . 0 21 hm5C_associated_SNPs_47763 0 0 1 0 2 Ribosome 0.50023164392109 0 0.9179088 0.000463287842179527 hm5C_site_3083 DeepMRMD:0.9179088;iRNA_m5C:0.000463287842179527 3084 chr9 137979825 137979825 1 + C T rs536307807 137979825 + 137979805 137979845 41 GGAGCGGGCGCTGGAGGCAGCTCGAGGCGCGATGTCGGTGC GGAGCGGGCGCTGGAGGCAGTTCGAGGCGCGATGTCGGTGC Direct Loss 0.967546395961679 0 0.90753067 0 prediction 0.935092791923358 Functional Loss - OLFM1 ENSG00000130558 UTR5 Human protein_coding chr9:137979825 chr9:137979825 . . 0 21 hm5C_associated_SNPs_47764 0 0 0 0 0 Endoplasmic reticulum 0.500231643920595 0 0.81506134 0.000463287841189874 hm5C_site_3084 DeepMRMD:0.81506134;iRNA_m5C:0.000463287841189874 3085 chr17 42249535 42249535 1 + C T ESCA 42249535 + 42249515 42249555 41 GCTGAGCTGGATGCCCGTGTCGGGGGTCGCGCTGCCTTGCA GCTGAGCTGGATGCCCGTGTTGGGGGTCGCGCTGCCTTGCA Direct Loss 0.967544279449797 0 0.95540833 0 prediction 0.935088558899593 Functional Loss - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42249535 chr17:42249535 synonymous SNV . 0 21 hm5C_associated_SNPs_47765 0 0 0 0 0 Nucleus 0.500231643921092 0 0.91081666 0.000463287842184856 hm5C_site_3085 DeepMRMD:0.91081666;iRNA_m5C:0.000463287842184856 3086 chr6 27777950 27777950 1 + C T BLCA 27777950 + 27777930 27777970 41 CGGAAGAGCGCTCCGGCCACCGGCGGTGTCAAGAAGCCCCA CGGAAGAGCGCTCCGGCCACTGGCGGTGTCAAGAAGCCCCA Direct Loss 0.967539353494425 0 0.89591014 0 prediction 0.935078706988849 Functional Loss - HIST1H3H ENSG00000203813 CDS Human other chr6:27777950 chr6:27777950 synonymous SNV . 0 21 hm5C_associated_SNPs_47766 0 0 1 0 0 cytosol 0.500231643920308 0 0.79182028 0.000463287840616111 hm5C_site_3086 DeepMRMD:0.79182028;iRNA_m5C:0.000463287840616111 3087 chr22 42473682 42473682 1 + C A PRAD 42473682 + 42473662 42473702 41 GCTACATGCGCCTGGTGGTACGCGAGTTGGAGAGCCAGTTG GCTACATGCGCCTGGTGGTAAGCGAGTTGGAGAGCCAGTTG Direct Loss 0.967504284121257 0 0.8850802 0 prediction 0.935008568242514 Functional Loss - FAM109B ENSG00000177096 CDS Human protein_coding chr22:42473682 chr22:42473682 nonsynonymous SNV 0.601 1 21 hm5C_associated_SNPs_47767 0 0 1 0 0 exosome 0.500231643661177 0 0.7701604 0.000463287322353567 hm5C_site_3087 DeepMRMD:0.7701604;iRNA_m5C:0.000463287322353567 3088 chr15 74336594 74336594 1 + C T rs142900813 74336594 + 74336574 74336614 41 GCCAGCTGGCTGCGGTGAACCGGGAAAGCAAGTTCCGCGTG GCCAGCTGGCTGCGGTGAACTGGGAAAGCAAGTTCCGCGTG Direct Loss 0.967494101698051 0 0.8941435 0 prediction 0.934988203396101 Functional Loss - PML ENSG00000140464 CDS Human protein_coding chr15:74336594 chr15:74336594 nonsynonymous SNV 0.399 1 21 hm5C_associated_SNPs_47768 0 0 0 0 1 Cytosol 0.500232176302371 0 0.788287 0.000464352604742757 hm5C_site_3088 DeepMRMD:0.788287;iRNA_m5C:0.000464352604742757 3089 chr20 5904028 5904028 1 + C T rs742710 5904028 + 5904008 5904048 41 GGAAGAGAGGGGCCTTGAGCCGGGAAAGGGACGCCATCACA GGAAGAGAGGGGCCTTGAGCTGGGAAAGGGACGCCATCACA Direct Loss 0.967487532431404 0 0.8933696 0 prediction 0.934975064862808 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5904028 chr20:5904028 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_47769 0 0 0 0 0 exosome 0.500231643921092 0 0.7867392 0.00046328784218419 hm5C_site_3089 DeepMRMD:0.7867392;iRNA_m5C:0.00046328784218419 3090 chr14 20665758 20665758 1 + C A LUSC 20665758 + 20665738 20665778 41 TCCATCATCTGTGCTGTGCACTGGGATCAGAGACTCCACGC TCCATCATCTGTGCTGTGCAATGGGATCAGAGACTCCACGC Direct Loss 0.967485688160865 0 0.5403725 0 prediction 0.934971376321729 Functional Loss - OR11G2 ENSG00000196832 CDS Human protein_coding chr14:20665758 chr14:20665758 nonsynonymous SNV 0.979 0 21 hm5C_associated_SNPs_47770 0 0 0 0 0 unknown 0.496912675715077 0 0.0807450000000001 0 hm5C_site_3090 DeepMRMD:0.0807450000000001;iRNA_m5C:0 3091 chr1 11779762 11779762 1 + C T rs12117076 11779762 + 11779742 11779782 41 ATCAACGTCTAGCGGCCCCGCGGGACTGGGGACTGAGCCCA ATCAACGTCTAGCGGCCCCGTGGGACTGGGGACTGAGCCCA Direct Loss 0.967462123389243 0 0.86297053 0 prediction 0.934924246778485 Functional Loss - DRAXIN ENSG00000162490 UTR3 Human protein_coding chr1:11779762 chr1:11779762 . . 0 21 hm5C_associated_SNPs_47771 0 0 0 0 0 exosome 0.500231643919125 0 0.72594106 0.00046328783825067 hm5C_site_3091 DeepMRMD:0.72594106;iRNA_m5C:0.00046328783825067 3092 chr6 43029098 43029098 1 + C T COAD 43029098 + 43029078 43029118 41 CAGGCCTGGTGTTGGGGCAGCGGGATGAGCCTGCAGGCCAC CAGGCCTGGTGTTGGGGCAGTGGGATGAGCCTGCAGGCCAC Direct Loss 0.967460765544236 0 0.91505027 0 prediction 0.934921531088472 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43029098 chr6:43029098 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_47772 0 0 1 0 1 Cytosol 0.500231643921088 0 0.83010054 0.000463287842175752 hm5C_site_3092 DeepMRMD:0.83010054;iRNA_m5C:0.000463287842175752 3093 chr12 5603588 5603588 1 + C A LUAD 5603588 + 5603568 5603608 41 TGCCCAAAGCTGAGGCTCCCCGAGAGCCGGAGCGGGGAGGG TGCCCAAAGCTGAGGCTCCCAGAGAGCCGGAGCGGGGAGGG Direct Loss 0.967453365689446 0 0.87266535 0 prediction 0.934906731378893 Functional Loss - NTF3 ENSG00000185652 CDS Human protein_coding chr12:5603588 chr12:5603588 synonymous SNV . 0 21 hm5C_associated_SNPs_47773 0 0 0 0 0 exosome 0.500231643339871 0 0.7453307 0.000463286679741381 hm5C_site_3093 DeepMRMD:0.7453307;iRNA_m5C:0.000463286679741381 3094 chr5 141305002 141305002 1 + C T COAD 141305002 + 141304982 141305022 41 CCCCATGGCCCAGGCACGAGCGGGGGTCCAAGGTCCCATGG CCCCATGGCCCAGGCACGAGTGGGGGTCCAAGGTCCCATGG Direct Loss 0.967430617532664 0 0.9459433 0 prediction 0.934861235065328 Functional Loss - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141305002 chr5:141305002 synonymous SNV . 0 21 hm5C_associated_SNPs_47774 0 0 1 0 2 Ribosome 0.500231643921025 0 0.8918866 0.000463287842049631 hm5C_site_3094 DeepMRMD:0.8918866;iRNA_m5C:0.000463287842049631 3095 chr2 171573716 171573716 1 + C T rs147780061 171573716 + 171573696 171573736 41 GTGTGCAACTGGCTCTTCTGCGGGAAGAGCTTCACGCGCTC GTGTGCAACTGGCTCTTCTGTGGGAAGAGCTTCACGCGCTC Direct Loss 0.967405017439365 0 0.89699 0 prediction 0.934810034878731 Functional Loss - SP5 ENSG00000204335 CDS Human protein_coding chr2:171573716 chr2:171573716 synonymous SNV . 0 21 hm5C_associated_SNPs_47775 0 0 0 0 0 insoluble cytoplasm 0.500231640089605 0 0.79398 0.000463280179210601 hm5C_site_3095 DeepMRMD:0.79398;iRNA_m5C:0.000463280179210601 3096 chr5 38409153 38409153 1 + C T LIHC 38409153 + 38409133 38409173 41 TACTGTGGGGAGAACGAACACGGGAGGGGGGATTTCATGTC TACTGTGGGGAGAACGAACATGGGAGGGGGGATTTCATGTC Direct Loss 0.967382916321403 0 0.9182516 0 prediction 0.934765832642805 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38409153 chr5:38409153 synonymous SNV . 0 21 hm5C_associated_SNPs_47776 0 0 0 0 2 Cytosol 0.500231643921093 0 0.8365032 0.000463287842185522 hm5C_site_3096 DeepMRMD:0.8365032;iRNA_m5C:0.000463287842185522 3097 chr6 17601213 17601213 1 + C T rs61736671 17601213 + 17601193 17601233 41 CCTGACCCGCGGACAGCTGCCGGCATCAGCACCCCTGCTCC CCTGACCCGCGGACAGCTGCTGGCATCAGCACCCCTGCTCC Direct Loss 0.967342992765964 0 0.9127804 0 prediction 0.934685985531928 Functional Loss - FAM8A1 ENSG00000137414 CDS Human protein_coding chr6:17601213 chr6:17601213 synonymous SNV . 0 21 hm5C_associated_SNPs_47777 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8255608 0.000463287842184856 hm5C_site_3097 DeepMRMD:0.8255608;iRNA_m5C:0.000463287842184856 3098 chr14 93399101 93399101 1 + C T rs729940 93399101 + 93399081 93399121 41 GAGGCTGGAGGCCATCCTCCCGGGAGGACAGCCTTGAGGCG GAGGCTGGAGGCCATCCTCCTGGGAGGACAGCCTTGAGGCG Direct Loss 0.967341565721014 0 0.95911026 0 prediction 0.934683131442029 Functional Loss - CHGA ENSG00000100604 CDS Human protein_coding chr14:93399101 chr14:93399101 nonsynonymous SNV 0.620 2 21 hm5C_associated_SNPs_47778 0 0 0 0 1 exosome 0.500231643921092 0 0.91822052 0.000463287842184856 hm5C_site_3098 DeepMRMD:0.91822052;iRNA_m5C:0.000463287842184856 3099 chr11 120196015 120196015 1 + C G rs80100651 120196015 + 120195995 120196035 41 GCTCCTCCGCTTCCTGTTGCCGCGATCCGGGCCGGGAGCTG GCTCCTCCGCTTCCTGTTGCGGCGATCCGGGCCGGGAGCTG Direct Loss 0.967323636371671 0 0.8801122 0 prediction 0.934647272743342 Functional Loss - TMEM136 ENSG00000181264 UTR5 Human protein_coding chr11:120196015 chr11:120196015 . . 0 21 hm5C_associated_SNPs_47779 0 0 1 0 1 Endoplasmic reticulum 0.500231643921113 0 0.7602244 0.000463287842225046 hm5C_site_3099 DeepMRMD:0.7602244;iRNA_m5C:0.000463287842225046 3100 chr19 15905302 15905302 1 + C T SKCM 15905302 + 15905282 15905322 41 ACCTGCCGGGTGGGCTGCTCCTGGGCTGGTGGCTTGGTCAT ACCTGCCGGGTGGGCTGCTCTTGGGCTGGTGGCTTGGTCAT Direct Loss 0.967275936404799 0 0.8785083 0 prediction 0.934551872809597 Functional Loss - OR10H5 ENSG00000172519 CDS Human protein_coding chr19:15905302 chr19:15905302 synonymous SNV . 0 21 hm5C_associated_SNPs_47780 0 0 0 0 0 unknown 0.500231643916889 0 0.7570166 0.00046328783377847 hm5C_site_3100 DeepMRMD:0.7570166;iRNA_m5C:0.00046328783377847 3101 chr11 63990890 63990890 1 + C A COAD 63990890 + 63990870 63990910 41 GCTACATTTTCCTGTCGACGCGGGAGCGGGCCCGTGGGGAG GCTACATTTTCCTGTCGACGAGGGAGCGGGCCCGTGGGGAG Direct Loss 0.967271544272271 0 0.56105316 0 prediction 0.934543088544542 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63990890 chr11:63990890 synonymous SNV . 0 21 hm5C_associated_SNPs_47781 0 0 1 0 0 Cytosol 0.500231643921092 0 0.12210632 0.000463287842184634 hm5C_site_3101 DeepMRMD:0.12210632;iRNA_m5C:0.000463287842184634 3102 chr4 17625374 17625374 1 + C T LGG 17625374 + 17625354 17625394 41 CTCAGGGCTCCTTGGCCTACCTGGAGCAGGCATCTGCCAAC CTCAGGGCTCCTTGGCCTACTTGGAGCAGGCATCTGCCAAC Direct Loss 0.967267906442078 0 0.4140194 0 prediction 0.934535812884157 Functional Loss - MED28 ENSG00000118579 CDS Human protein_coding chr4:17625374 chr4:17625374 synonymous SNV . 0 21 hm5C_associated_SNPs_47782 0 0 1 1 1 Ribosome 0.500231625072689 0 0 0.000463250145377181 hm5C_site_3102 DeepMRMD:0;iRNA_m5C:0.000463250145377181 3103 chr2 237489738 237489738 1 + C T rs146961395 237489738 + 237489718 237489758 41 AGCATCAAGGAGTGGCTGATCGGCATGGAGCTGGTCTCCGT AGCATCAAGGAGTGGCTGATTGGCATGGAGCTGGTCTCCGT Direct Loss 0.967235313311058 0 0.6264726 0 prediction 0.934470626622115 Functional Loss - ACKR3 ENSG00000144476 CDS Human protein_coding chr2:237489738 chr2:237489738 synonymous SNV . 0 21 hm5C_associated_SNPs_47783 0 0 0 0 0 Nucleus 0.500231643934778 0 0.2529452 0.000463287869556961 hm5C_site_3103 DeepMRMD:0.2529452;iRNA_m5C:0.000463287869556961 3104 chr2 114256885 114256885 1 + C T UCEC 114256885 + 114256865 114256905 41 CCACACCGCAGCGCAGCCTCCGGGACTCCGATGGGGAAGAC CCACACCGCAGCGCAGCCTCTGGGACTCCGATGGGGAAGAC Direct Loss 0.967229452534626 0 0.79112935 0 prediction 0.934458905069252 Functional Loss - FOXD4L1 ENSG00000184492 CDS Human protein_coding chr2:114256885 chr2:114256885 nonsynonymous SNV 0.001 4 21 hm5C_associated_SNPs_47784 0 0 0 0 0 exosome 0.500231643921415 0 0.5822587 0.000463287842829452 hm5C_site_3104 DeepMRMD:0.5822587;iRNA_m5C:0.000463287842829452 3105 chr5 135388723 135388723 1 + C T UCEC 135388723 + 135388703 135388743 41 GGGGACATGCTCACTATCAACGGGAAGGCGATCATCTCCAA GGGGACATGCTCACTATCAATGGGAAGGCGATCATCTCCAA Direct Loss 0.967222465050119 0 0.82915485 0 prediction 0.934444930100238 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135388723 chr5:135388723 synonymous SNV . 0 21 hm5C_associated_SNPs_47785 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0 0.6583097 0.000463287842184856 hm5C_site_3105 DeepMRMD:0.6583097;iRNA_m5C:0.000463287842184856 3106 chr22 39918236 39918236 1 + C G CESC 39918236 + 39918216 39918256 41 GTATGAGCCCAGAGTCCTATCTGGGGTCTCCTCAGCACAGC GTATGAGCCCAGAGTCCTATGTGGGGTCTCCTCAGCACAGC Direct Loss 0.967194608797349 0 0.61099195 0 prediction 0.934389217594699 Functional Loss - ATF4 ENSG00000128272 CDS Human protein_coding chr22:39918236 chr22:39918236 nonsynonymous SNV 0.091 0 21 hm5C_associated_SNPs_47786 0 0 1 0 0 Ribosome 0.500231643922474 0 0.2219839 0.000463287844948645 hm5C_site_3106 DeepMRMD:0.2219839;iRNA_m5C:0.000463287844948645 3107 chr22 35730359 35730359 1 + C A UCEC 35730359 + 35730339 35730379 41 TGAGAGCTGGCCTGCAGTCTCTGGAGGCCTCTGGTCGACTG TGAGAGCTGGCCTGCAGTCTATGGAGGCCTCTGGTCGACTG Direct Loss 0.967192873281422 0 0.8663692 0 prediction 0.934385746562844 Functional Loss - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35730359 chr22:35730359 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_47787 0 0 1 0 1 Cytosol 0.500231644232484 0 0.7327384 0.000463288464968237 hm5C_site_3107 DeepMRMD:0.7327384;iRNA_m5C:0.000463288464968237 3108 chrX 117959353 117959353 1 + C T UCEC 117959353 + 117959333 117959373 41 CAGAAACATGAAGTTGTTCTCGGGGAGGGTGGTGCCAGCCC CAGAAACATGAAGTTGTTCTTGGGGAGGGTGGTGCCAGCCC Direct Loss 0.967170502520035 0 0.93644875 0 prediction 0.93434100504007 Functional Loss - ZCCHC12 ENSG00000174460 CDS Human protein_coding chrX:117959353 chrX:117959353 nonsynonymous SNV 0.940 3 21 hm5C_associated_SNPs_47788 0 0 0 0 0 exosome 0.500231917693775 0 0.8728975 0.000463835387549683 hm5C_site_3108 DeepMRMD:0.8728975;iRNA_m5C:0.000463835387549683 3109 chr6 49518617 49518617 1 + C A rs536392892 49518617 + 49518597 49518637 41 CTTTTCCGCGGGAGGTAGGGCGCGGGGCTCCGCTAGCTCCG CTTTTCCGCGGGAGGTAGGGAGCGGGGCTCCGCTAGCTCCG Direct Loss 0.967165064109568 0 0.91604185 0 prediction 0.934330128219136 Functional Loss - C6orf141 ENSG00000197261 CDS Human protein_coding chr6:49518617 chr6:49518617 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_47789 0 0 0 0 0 exosome 0.50023164392109 0 0.8320837 0.000463287842179305 hm5C_site_3109 DeepMRMD:0.8320837;iRNA_m5C:0.000463287842179305 3110 chr2 47596298 47596298 1 + C G CESC 47596298 + 47596278 47596318 41 CCGCGCCCCAACTGCAGCGCCGGGGCTGGGGGAGGGGAGCC CCGCGCCCCAACTGCAGCGCGGGGGCTGGGGGAGGGGAGCC Direct Loss 0.967149884423332 0 0.87030154 0 prediction 0.934299768846664 Functional Loss - EPCAM ENSG00000119888 CDS Human protein_coding chr2:47596298 chr2:47596298 synonymous SNV . 0 21 hm5C_associated_SNPs_47790 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.74060308 0.000463287842184856 hm5C_site_3110 DeepMRMD:0.74060308;iRNA_m5C:0.000463287842184856 3111 chr12 125550167 125550167 1 + C A UCEC 125550167 + 125550147 125550187 41 GCCCCGGTCGGGAGGAGATCCTGGAGTGCCAGGTGATGTGG GCCCCGGTCGGGAGGAGATCATGGAGTGCCAGGTGATGTGG Direct Loss 0.967147782501211 0 0.90147865 0 prediction 0.934295565002422 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125550167 chr12:125550167 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_47791 0 0 1 3 1 Ribosome 0.500231643920216 0 0.8029573 0.000463287840432924 hm5C_site_3111 DeepMRMD:0.8029573;iRNA_m5C:0.000463287840432924 3112 chr14 24108151 24108151 1 + C A rs142650346 24108151 + 24108131 24108171 41 TCTGTGAGGATGAGCAGCACCGGGATAGACAGGAAGGGCGT TCTGTGAGGATGAGCAGCACAGGGATAGACAGGAAGGGCGT Direct Loss 0.967124781535611 0 0.87418497 0 prediction 0.934249563071222 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108151 chr14:24108151 synonymous SNV . 0 21 hm5C_associated_SNPs_47792 0 0 1 0 1 Ribosome 0.500231644062596 0 0.74836994 0.000463288125192696 hm5C_site_3112 DeepMRMD:0.74836994;iRNA_m5C:0.000463288125192696 3113 chr8 103573001 103573001 1 + C A rs3018445 103573001 + 103572981 103573021 41 CCTTGCAGCCCCTGCAGCCCCTGCAGCCCCTGCAACCCCTG CCTTGCAGCCCCTGCAGCCCATGCAGCCCCTGCAACCCCTG Direct Loss 0.967119689226505 0 0.42507428 0 prediction 0.934239378453011 Functional Loss - ODF1 ENSG00000155087 CDS Human protein_coding chr8:103573001 chr8:103573001 synonymous SNV . 0 21 hm5C_associated_SNPs_47793 0 0 0 0 0 unknown 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3113 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3114 chr11 65479743 65479743 1 + C T COAD 65479743 + 65479723 65479763 41 AGTGGAGGGAGGGAAGATGGCGGAGGTGGTGAGTCCGGTGC AGTGGAGGGAGGGAAGATGGTGGAGGTGGTGAGTCCGGTGC Direct Loss 0.967093842517747 0 0.8885646 0 prediction 0.934187685035494 Functional Loss - KAT5 ENSG00000172977 CDS Human protein_coding chr11:65479743 chr11:65479743 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47794 0 0 1 0 1 Cytosol 0.500231643921093 0 0.7771292 0.000463287842185967 hm5C_site_3114 DeepMRMD:0.7771292;iRNA_m5C:0.000463287842185967 3115 chr4 147560466 147560466 1 + C T HNSC 147560466 + 147560446 147560486 41 AACGCTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGG AACGCTGGTGGTGGCGGCGGTGGCGGCGGCGGCGGCGGCGG Direct Loss 0.96709228927349 0 0.93459636 0 prediction 0.93418457854698 Functional Loss - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147560466 chr4:147560466 synonymous SNV . 0 21 hm5C_associated_SNPs_47795 0 0 0 0 0 unknown 0.500231643920203 0 0.86919272 0.000463287840406279 hm5C_site_3115 DeepMRMD:0.86919272;iRNA_m5C:0.000463287840406279 3116 chr2 238536246 238536246 1 + C A rs28364855 238536246 + 238536226 238536266 41 GGCCGGGGCGGCGCGAGCGGCTGGAGCAACGGGCCCCGCGG GGCCGGGGCGGCGCGAGCGGATGGAGCAACGGGCCCCGCGG Direct Loss 0.96707805062499 0 0.9047159 0 prediction 0.934156101249981 Functional Loss - LRRFIP1 ENSG00000124831 UTR5 Human protein_coding chr2:238536246 chr2:238536246 . . 0 21 hm5C_associated_SNPs_47796 0 0 0 0 0 Ribosome 0.500231643921092 0 0.8094318 0.000463287842184412 hm5C_site_3116 DeepMRMD:0.8094318;iRNA_m5C:0.000463287842184412 3117 chr16 3706696 3706696 1 + C T UCEC 3706696 + 3706676 3706716 41 GATGATGGCTGCGAGCCCTGCGGGAACGACACCTTCAACCG GATGATGGCTGCGAGCCCTGTGGGAACGACACCTTCAACCG Direct Loss 0.967070788223803 0 0.8930246 0 prediction 0.934141576447605 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3706696 chr16:3706696 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_47797 0 0 0 0 2 Cytosol 0.500231659696325 0 0.7860492 0.000463319392649764 hm5C_site_3117 DeepMRMD:0.7860492;iRNA_m5C:0.000463319392649764 3118 chr4 1219224 1219224 1 + C T CESC 1219224 + 1219204 1219244 41 TCGCGGATCTGCTCGACGCTCTGGACTCGTGTGCCCTCCCG TCGCGGATCTGCTCGACGCTTTGGACTCGTGTGCCCTCCCG Direct Loss 0.967043087016094 0 0.44390154 0 prediction 0.934086174032187 Functional Loss - CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1219224 chr4:1219224 synonymous SNV . 0 21 hm5C_associated_SNPs_47798 0 0 0 0 0 Ribosome 0.500231807057306 0 0 0.00046361411461282 hm5C_site_3118 DeepMRMD:0;iRNA_m5C:0.00046361411461282 3119 chr6 138725715 138725715 1 + C G rs377430480 138725715 + 138725695 138725735 41 GACGCCGGGCTGGAAGGCCCCGGAGGACGCCGGCCCCCAGG GACGCCGGGCTGGAAGGCCCGGGAGGACGCCGGCCCCCAGG Direct Loss 0.967037748596254 0 0.9050224 0 prediction 0.934075497192507 Functional Loss - HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138725715 chr6:138725715 nonsynonymous SNV 0.060 0 21 hm5C_associated_SNPs_47799 0 0 1 0 1 Cytosol 0.500231643921584 0 0.8100448 0.000463287843167404 hm5C_site_3119 DeepMRMD:0.8100448;iRNA_m5C:0.000463287843167404 3120 chr1 160340708 160340708 1 + C T UCEC 160340708 + 160340688 160340728 41 AAGACCTGCAGCATCTGAGCCGCGAGGAGCGCCGGCGCCGG AAGACCTGCAGCATCTGAGCTGCGAGGAGCGCCGGCGCCGG Direct Loss 0.96702984469174 0 0.38763544 0 prediction 0.934059689383479 Functional Loss - NHLH1 ENSG00000171786 CDS Human protein_coding chr1:160340708 chr1:160340708 nonsynonymous SNV 0.895 3 21 hm5C_associated_SNPs_47800 0 0 0 0 0 Cytosol 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3120 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3121 chr8 23429144 23429144 1 + C A LUAD 23429144 + 23429124 23429164 41 GTAAGACCCTTCTGAACACTCAGGAGAACGTGGCCCTCTCG GTAAGACCCTTCTGAACACTAAGGAGAACGTGGCCCTCTCG Direct Loss 0.966984083342991 0 0.9351804 0 prediction 0.933968166685981 Functional Loss - SLC25A37 ENSG00000147454 CDS Human protein_coding chr8:23429144 chr8:23429144 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_47801 0 0 1 0 0 Ribosome 0.500231643921101 0 0.8703608 0.000463287842201954 hm5C_site_3121 DeepMRMD:0.8703608;iRNA_m5C:0.000463287842201954 3122 chr12 48358029 48358029 1 + C A BLCA 48358029 + 48358009 48358049 41 ATATCACGGCCATGGGGTCTCAGCATTCCGCTGCTGCTCGC ATATCACGGCCATGGGGTCTAAGCATTCCGCTGCTGCTCGC Direct Loss 0.966977199124646 0 0.51229465 0 prediction 0.933954398249292 Functional Loss - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48358029 chr12:48358029 nonsynonymous SNV 0.993 0 21 hm5C_associated_SNPs_47802 0 0 1 0 1 Ribosome 0.500231643921539 0 0.0245892999999999 0.000463287843077254 hm5C_site_3122 DeepMRMD:0.0245892999999999;iRNA_m5C:0.000463287843077254 3123 chr19 33794536 33794536 1 + C T rs568248679 33794536 + 33794516 33794556 41 TCGCCGGGCGCTGTAGTCCCCGGGATCCTAGGGACCGAGGC TCGCCGGGCGCTGTAGTCCCTGGGATCCTAGGGACCGAGGC Direct Loss 0.966955977150268 0 0.92633325 0 prediction 0.933911954300536 Functional Loss - CEBPA-AS1 ENSG00000178863;ENSG00000267296 ncRNA_exonic Human other chr19:33794536 chr19:33794536 . . 0 21 hm5C_associated_SNPs_47803 0 0 0 0 0 unknown 0.50022838022765 0 0.8526665 0.00045676045530052 hm5C_site_3123 DeepMRMD:0.8526665;iRNA_m5C:0.00045676045530052 3124 chr15 23811081 23811081 1 + C A HNSC 23811081 + 23811061 23811101 41 AGATTCAGCCCTGCCACATGCGGCAAGGGGCTGGGCCCCCT AGATTCAGCCCTGCCACATGAGGCAAGGGGCTGGGCCCCCT Direct Loss 0.966932740498435 0 0.31653956 0 prediction 0.933865480996871 Functional Loss - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811081 chr15:23811081 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47804 0 0 0 0 0 chromatin 0.50023164392103 0 0 0.000463287842059845 hm5C_site_3124 DeepMRMD:0;iRNA_m5C:0.000463287842059845 3125 chr2 30480394 30480394 1 + C T COAD 30480394 + 30480374 30480414 41 ACAGAAGGGGAGGTGGAGAGCGGGGAGCTCCGGTGGCCCCC ACAGAAGGGGAGGTGGAGAGTGGGGAGCTCCGGTGGCCCCC Direct Loss 0.966932430949463 0 0.9376465 0 prediction 0.933864861898926 Functional Loss - LBH ENSG00000213626 CDS Human protein_coding chr2:30480394 chr2:30480394 synonymous SNV . 0 21 hm5C_associated_SNPs_47805 0 0 0 0 1 Nucleus 0.500231643921092 0 0.875293 0.000463287842184856 hm5C_site_3125 DeepMRMD:0.875293;iRNA_m5C:0.000463287842184856 3126 chr11 65771217 65771217 1 + C T GBM 65771217 + 65771197 65771237 41 GGGACTGCTTCGGATGCCTTCGAGAGTGGTGCGACGCCTTC GGGACTGCTTCGGATGCCTTTGAGAGTGGTGCGACGCCTTC Direct Loss 0.966931358472495 0 0.9095167 0 prediction 0.933862716944991 Functional Loss - BANF1 ENSG00000175334 CDS Human protein_coding chr11:65771217 chr11:65771217 stopgain 1.000 1 21 hm5C_associated_SNPs_47806 0 0 1 0 0 Ribosome 0.500231644212446 0 0.8190334 0.000463288424892294 hm5C_site_3126 DeepMRMD:0.8190334;iRNA_m5C:0.000463288424892294 3127 chr11 17741678 17741678 1 + C T COAD 17741678 + 17741658 17741698 41 GCCGCAAGGCCGCCACCATGCGCGAGCGGCGCCGCCTGAGC GCCGCAAGGCCGCCACCATGTGCGAGCGGCGCCGCCTGAGC Direct Loss 0.966919928181489 0 0.2176004 0 prediction 0.933839856362978 Functional Loss - MYOD1 ENSG00000129152 CDS Human protein_coding chr11:17741678 chr11:17741678 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_47807 0 0 0 0 0 unknown 0.500231645213712 0 0 0.00046329042742399 hm5C_site_3127 DeepMRMD:0;iRNA_m5C:0.00046329042742399 3128 chrX 48458940 48458940 1 + C T CESC 48458940 + 48458920 48458960 41 CTGAGGATGGTCGCTGCATCCGAGAGATCCCTGACCCCGAT CTGAGGATGGTCGCTGCATCTGAGAGATCCCTGACCCCGAT Direct Loss 0.966917815564358 0 0.72561944 0 prediction 0.933835631128716 Functional Loss - WDR13 ENSG00000101940 CDS Human protein_coding chrX:48458940 chrX:48458940 stopgain 1.000 1 21 hm5C_associated_SNPs_47808 0 0 1 0 1 Ribosome 0.500246213322281 0 0.45123888 0.000492426644562283 hm5C_site_3128 DeepMRMD:0.45123888;iRNA_m5C:0.000492426644562283 3129 chr11 7110979 7110979 1 + C T UCEC 7110979 + 7110959 7110999 41 GCGACCCCTACCTGGGCCCGCGGGATGAGGGCTACTCGTCC GCGACCCCTACCTGGGCCCGTGGGATGAGGGCTACTCGTCC Direct Loss 0.966890713690582 0 0.9294276 0 prediction 0.933781427381164 Functional Loss - RBMXL2 ENSG00000170748 CDS Human protein_coding chr11:7110979 chr11:7110979 nonsynonymous SNV 0.108 1 21 hm5C_associated_SNPs_47809 0 0 0 0 0 exosome 0.50023164392175 0 0.8588552 0.00046328784349936 hm5C_site_3129 DeepMRMD:0.8588552;iRNA_m5C:0.00046328784349936 3130 chr9 100616283 100616283 1 + C T rs187644329 100616283 + 100616263 100616303 41 GGCGAGACGGCAGCAGGGGCCGGGGTCCCAGGGGAGGCCAC GGCGAGACGGCAGCAGGGGCTGGGGTCCCAGGGGAGGCCAC Direct Loss 0.96687417872781 0 0.9109295 0 prediction 0.93374835745562 Functional Loss - FOXE1 ENSG00000178919 CDS Human protein_coding chr9:100616283 chr9:100616283 synonymous SNV . 0 21 hm5C_associated_SNPs_47810 0 0 0 0 0 exosome 0.500231643933608 0 0.821859 0.000463287867216833 hm5C_site_3130 DeepMRMD:0.821859;iRNA_m5C:0.000463287867216833 3131 chr19 42813884 42813884 1 + C T LUAD 42813884 + 42813864 42813904 41 ACGATCCTCCTGTGGCCATTCGGGATCCACCTGTGGTCCCT ACGATCCTCCTGTGGCCATTTGGGATCCACCTGTGGTCCCT Direct Loss 0.966831786752256 0 0.937465 0 prediction 0.933663573504512 Functional Loss - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42813884 chr19:42813884 nonsynonymous SNV 0.043 2 21 hm5C_associated_SNPs_47811 0 0 0 0 0 exosome 0.500231643960507 0 0.87493 0.000463287921014466 hm5C_site_3131 DeepMRMD:0.87493;iRNA_m5C:0.000463287921014466 3132 chr7 6639964 6639964 1 + C G BLCA 6639964 + 6639944 6639984 41 TCTGCAGGTGGCCATGGCCTCAGGAGCTCTGCTGTGCACGA TCTGCAGGTGGCCATGGCCTGAGGAGCTCTGCTGTGCACGA Direct Loss 0.966824113203439 0 0.91982234 0 prediction 0.933648226406878 Functional Loss - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6639964 chr7:6639964 stopgain 0.870 1 21 hm5C_associated_SNPs_47812 0 0 0 0 1 chromatin 0.500231886302834 0 0.83964468 0.000463772605668877 hm5C_site_3132 DeepMRMD:0.83964468;iRNA_m5C:0.000463772605668877 3133 chr19 7964794 7964794 1 + C G LUSC 7964794 + 7964774 7964814 41 TGTCACAGCTGGTGCACTTGCAGGAGCTCAGCTTGCTCCAC TGTCACAGCTGGTGCACTTGGAGGAGCTCAGCTTGCTCCAC Direct Loss 0.966812196339442 0 0.94441926 0 prediction 0.933624392678885 Functional Loss - LRRC8E ENSG00000171017;ENSG00000214248 CDS Human other chr19:7964794 chr19:7964794 nonsynonymous SNV 0.962 1 21 hm5C_associated_SNPs_47813 0 0 0 0 0 chromatin 0.5002316535322 0 0.88883852 0.000463307064400009 hm5C_site_3133 DeepMRMD:0.88883852;iRNA_m5C:0.000463307064400009 3134 chr2 113343594 113343594 1 + C A UCEC 113343594 + 113343574 113343614 41 CTCGCTACTGTGGCCGGGAGCTGGAGCAGTATGGCCAGTGT CTCGCTACTGTGGCCGGGAGATGGAGCAGTATGGCCAGTGT Direct Loss 0.96680998546016 0 0.89926326 0 prediction 0.93361997092032 Functional Loss - CHCHD5 ENSG00000125611 CDS Human protein_coding chr2:113343594 chr2:113343594 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_47814 0 0 1 0 2 Ribosome 0.500343942769802 0 0.79852652 0.000687885539603972 hm5C_site_3134 DeepMRMD:0.79852652;iRNA_m5C:0.000687885539603972 3135 chrX 102192642 102192642 1 + C T LUAD 102192642 + 102192622 102192662 41 AATCGCCTACATCTGGCATTCAAGAGGCAGGTGCCCAGGGA AATCGCCTACATCTGGCATTTAAGAGGCAGGTGCCCAGGGA Direct Loss 0.966804900226308 0 0.82434714 0 prediction 0.933609800452616 Functional Loss - RAB40AL ENSG00000102128 CDS Human protein_coding chrX:102192642 chrX:102192642 synonymous SNV . 0 21 hm5C_associated_SNPs_47815 0 0 0 0 0 exosome 0.500231643935337 0 0.64869428 0.000463287870673401 hm5C_site_3135 DeepMRMD:0.64869428;iRNA_m5C:0.000463287870673401 3136 chr19 35491265 35491265 1 + C T rs565580041 35491265 + 35491245 35491285 41 GGTCGGGTGGGGGCGGCGGCCGCGGAAGGCCAGGCCGGTGC GGTCGGGTGGGGGCGGCGGCTGCGGAAGGCCAGGCCGGTGC Direct Loss 0.966802958226028 0 0.9213314 0 prediction 0.933605916452056 Functional Loss - GRAMD1A ENSG00000089351 UTR5 Human protein_coding chr19:35491265 chr19:35491265 . . 0 21 hm5C_associated_SNPs_47816 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8426628 0.000463287842184856 hm5C_site_3136 DeepMRMD:0.8426628;iRNA_m5C:0.000463287842184856 3137 chr17 32597347 32597347 1 + C T UCEC 32597347 + 32597327 32597367 41 ACTTCTGTGTCTGCTGCTCACAGCAGCTGCTTTCAGCCCCC ACTTCTGTGTCTGCTGCTCATAGCAGCTGCTTTCAGCCCCC Direct Loss 0.966800985221931 0 0.85751164 0 prediction 0.933601970443863 Functional Loss - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32597347 chr17:32597347 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_47817 0 0 0 0 1 unknown 0.500232205367237 0 0.71502328 0.00046441073447312 hm5C_site_3137 DeepMRMD:0.71502328;iRNA_m5C:0.00046441073447312 3138 chr9 138441743 138441743 1 + C T SARC 138441743 + 138441723 138441763 41 AGACACAGAGCCCGGACCACCTGGACCTACCCTCCAGCCAT AGACACAGAGCCCGGACCACTTGGACCTACCCTCCAGCCAT Direct Loss 0.966798160242393 0 0.17259642 0 prediction 0.933596320484786 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138441743 chr9:138441743 synonymous SNV 0.013 0 21 hm5C_associated_SNPs_47818 0 0 0 2 1 unknown 0.500231643921093 0 0 0.000463287842185522 hm5C_site_3138 DeepMRMD:0;iRNA_m5C:0.000463287842185522 3139 chr6 74073391 74073391 1 + C T LGG 74073391 + 74073371 74073411 41 TCGGTGGAGGTCCGGGAGGCCGGGACCCAGCGTTCGGTGGA TCGGTGGAGGTCCGGGAGGCTGGGACCCAGCGTTCGGTGGA Direct Loss 0.966791197453846 0 0.9056345 0 prediction 0.933582394907692 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74073391 chr6:74073391 synonymous SNV . 0 21 hm5C_associated_SNPs_47819 0 0 0 0 0 unknown 0.500232183833352 0 0.811269 0.000464367666704435 hm5C_site_3139 DeepMRMD:0.811269;iRNA_m5C:0.000464367666704435 3140 chr17 58234821 58234821 1 + C T BLCA 58234821 + 58234801 58234841 41 GGAGAACAAGGCCAGCATTTCTGGAGGAGGACTGCCTGCCC GGAGAACAAGGCCAGCATTTTTGGAGGAGGACTGCCTGCCC Direct Loss 0.966776303976778 0 0.9022023 0 prediction 0.933552607953557 Functional Loss - CA4 ENSG00000167434 CDS Human protein_coding chr17:58234821 chr17:58234821 nonsynonymous SNV 0.026 0 21 hm5C_associated_SNPs_47820 0 0 0 0 1 exosome 0.500231643921202 0 0.8044046 0.00046328784240468 hm5C_site_3140 DeepMRMD:0.8044046;iRNA_m5C:0.00046328784240468 3141 chr11 56128132 56128132 1 + C T SKCM 56128132 + 56128112 56128152 41 GCTGTACATGGTGGTGGTGTCTCGGCGGCTCTGCCTCCTGC GCTGTACATGGTGGTGGTGTTTCGGCGGCTCTGCCTCCTGC Direct Loss 0.966769233087621 0 0.8672745 0 prediction 0.933538466175241 Functional Loss - OR8J1 ENSG00000172487 CDS Human protein_coding chr11:56128132 chr11:56128132 nonsynonymous SNV 0.242 4 21 hm5C_associated_SNPs_47821 0 0 0 0 0 unknown 0.500231643921093 0 0.734549 0.000463287842185967 hm5C_site_3141 DeepMRMD:0.734549;iRNA_m5C:0.000463287842185967 3142 chr8 120429131 120429131 1 + C T STAD 120429131 + 120429111 120429151 41 GTGGCGAGAGCTGCTCAGATCTGGAGCCATGCGACGAGAGC GTGGCGAGAGCTGCTCAGATTTGGAGCCATGCGACGAGAGC Direct Loss 0.966763063160925 0 0.43905297 0 prediction 0.933526126321851 Functional Loss - NOV ENSG00000136999 CDS Human protein_coding chr8:120429131 chr8:120429131 synonymous SNV . 0 21 hm5C_associated_SNPs_47822 0 0 0 0 1 exosome 0.50023184694254 0 0 0.000463693885080163 hm5C_site_3142 DeepMRMD:0;iRNA_m5C:0.000463693885080163 3143 chr22 46685380 46685380 1 + C T rs11705624 46685380 + 46685360 46685400 41 GCCCTGGTGGAGGCTGAGGACGGGAACCCTGACCGCGTCCT GCCCTGGTGGAGGCTGAGGATGGGAACCCTGACCGCGTCCT Direct Loss 0.966747792811256 0 0.8909798 0 prediction 0.933495585622513 Functional Loss - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46685380 chr22:46685380 synonymous SNV . 0 21 hm5C_associated_SNPs_47823 0 0 1 0 2 Ribosome 0.500231160592211 0 0.7819596 0.000462321184421022 hm5C_site_3143 DeepMRMD:0.7819596;iRNA_m5C:0.000462321184421022 3144 chr11 117870050 117870050 1 + C T UCEC 117870050 + 117870030 117870070 41 GATGGCCTTGGCCCCAAATTCGGGAGATGCCTGGTTGATGA GATGGCCTTGGCCCCAAATTTGGGAGATGCCTGGTTGATGA Direct Loss 0.966747727604472 0 0.942239 0 prediction 0.933495455208945 Functional Loss - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117870050 chr11:117870050 synonymous SNV . 0 21 hm5C_associated_SNPs_47824 0 0 0 0 0 nucleoplasm 0.5002316439211 0 0.884478 0.000463287842199289 hm5C_site_3144 DeepMRMD:0.884478;iRNA_m5C:0.000463287842199289 3145 chr8 75276514 75276514 1 + C T COAD 75276514 + 75276494 75276534 41 CCTTGTGGTTGGTTTGCTTGCAGGAGTGGGATATTTTGCTT CCTTGTGGTTGGTTTGCTTGTAGGAGTGGGATATTTTGCTT Direct Loss 0.966737630059023 0 0.89315045 0 prediction 0.933475260118045 Functional Loss - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75276514 chr8:75276514 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_47825 0 0 1 0 0 nucleus 0.500231643921094 0 0.7863009 0.000463287842188409 hm5C_site_3145 DeepMRMD:0.7863009;iRNA_m5C:0.000463287842188409 3146 chrX 70384090 70384090 1 + C T UCEC 70384090 + 70384070 70384110 41 AGCGAGAATATTGCCTTCTTCGGGGGAGACCCCCGCCGGAT AGCGAGAATATTGCCTTCTTTGGGGGAGACCCCCGCCGGAT Direct Loss 0.966734147977596 0 0.9634896 0 prediction 0.933468295955192 Functional Loss - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70384090 chrX:70384090 synonymous SNV . 0 21 hm5C_associated_SNPs_47826 0 0 0 0 1 exosome 0.500231643921092 0 0.9269792 0.000463287842184856 hm5C_site_3146 DeepMRMD:0.9269792;iRNA_m5C:0.000463287842184856 3147 chr1 152882748 152882748 1 + C G rs115821967 152882748 + 152882728 152882768 41 TGTTGGAGCTCCCAGAGCAGCAGGAGGGGCACCTGAAGCAC TGTTGGAGCTCCCAGAGCAGGAGGAGGGGCACCTGAAGCAC Direct Loss 0.966727271587531 0 0.894171 0 prediction 0.933454543175063 Functional Loss - IVL ENSG00000163207 CDS Human protein_coding chr1:152882748 chr1:152882748 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_47827 0 0 0 0 0 unknown 0.500231643921133 0 0.788342 0.000463287842266125 hm5C_site_3147 DeepMRMD:0.788342;iRNA_m5C:0.000463287842266125 3148 chrX 89177587 89177587 1 + C A LUAD 89177587 + 89177567 89177607 41 CTTGCCAAAGGGCCAGATGTCAAGAGAGAAGCAACCAGATC CTTGCCAAAGGGCCAGATGTAAAGAGAGAAGCAACCAGATC Direct Loss 0.966726043914582 0 0.84915423 0 prediction 0.933452087829163 Functional Loss - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177587 chrX:89177587 stopgain 0.006 0 21 hm5C_associated_SNPs_47828 0 0 0 0 0 exosome 0.500231643921092 0 0.69830846 0.000463287842184856 hm5C_site_3148 DeepMRMD:0.69830846;iRNA_m5C:0.000463287842184856 3149 chr16 54965196 54965196 1 + C T BLCA 54965196 + 54965176 54965216 41 GTACAGCACCAGCGTCATTTCGGGGCCCCGCACGGATGAGC GTACAGCACCAGCGTCATTTTGGGGCCCCGCACGGATGAGC Direct Loss 0.966720822598218 0 0.9331278 0 prediction 0.933441645196437 Functional Loss - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54965196 chr16:54965196 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_47829 0 0 0 0 0 exosome 0.500231636491735 0 0.8662556 0.000463272983469265 hm5C_site_3149 DeepMRMD:0.8662556;iRNA_m5C:0.000463272983469265 3150 chr11 7111361 7111361 1 + C T PAAD 7111361 + 7111341 7111381 41 TGGCCGGAGCGACCGCTACTCGAGGGGCCGACACCGGGTGG TGGCCGGAGCGACCGCTACTTGAGGGGCCGACACCGGGTGG Direct Loss 0.966717117627045 0 0.93033874 0 prediction 0.933434235254091 Functional Loss - RBMXL2 ENSG00000170748 CDS Human protein_coding chr11:7111361 chr11:7111361 nonsynonymous SNV 0.860 2 21 hm5C_associated_SNPs_47830 0 0 0 0 0 exosome 0.50023164442673 0 0.86067748 0.000463288853460586 hm5C_site_3150 DeepMRMD:0.86067748;iRNA_m5C:0.000463288853460586 3151 chr12 58152517 58152517 1 + C G CESC 58152517 + 58152497 58152537 41 CTCACGGACGGGCCCCACCTCTGGGGCCACGAGCCGCCCCC CTCACGGACGGGCCCCACCTGTGGGGCCACGAGCCGCCCCC Direct Loss 0.966711774976613 0 0.9006715 0 prediction 0.933423549953226 Functional Loss - MARCH9 ENSG00000139266 CDS Human protein_coding chr12:58152517 chr12:58152517 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_47831 0 0 1 0 0 Ribosome 0.500231643921093 0 0.801343 0.000463287842185078 hm5C_site_3151 DeepMRMD:0.801343;iRNA_m5C:0.000463287842185078 3152 chr16 27459902 27459902 1 + C T UCEC 27459902 + 27459882 27459922 41 TCCAGCCTGGAGCTGGGACCCTGGAGCCCAGAGGTGCCCTC TCCAGCCTGGAGCTGGGACCTTGGAGCCCAGAGGTGCCCTC Direct Loss 0.966709203879204 0 0.7213758 0 prediction 0.933418407758407 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27459902 chr16:27459902 synonymous SNV . 0 21 hm5C_associated_SNPs_47832 0 0 0 0 1 nucleus 0.500231643921093 0 0.4427516 0.000463287842185078 hm5C_site_3152 DeepMRMD:0.4427516;iRNA_m5C:0.000463287842185078 3153 chr11 65562573 65562573 1 + C T BLCA 65562573 + 65562553 65562593 41 CCTTCACGCAGCGCTGCTCTCTGGAGTCTCACCTCAAGAAG CCTTCACGCAGCGCTGCTCTTTGGAGTCTCACCTCAAGAAG Direct Loss 0.966694089265173 0 0.73657924 0 prediction 0.933388178530345 Functional Loss - OVOL1 ENSG00000172818 CDS Human protein_coding chr11:65562573 chr11:65562573 synonymous SNV . 0 21 hm5C_associated_SNPs_47833 0 0 0 0 1 exosome 0.500231643934839 0 0.47315848 0.000463287869677753 hm5C_site_3153 DeepMRMD:0.47315848;iRNA_m5C:0.000463287869677753 3154 chr20 43547605 43547605 1 + C T LUSC 43547605 + 43547585 43547625 41 CGGAGCTGGGGGCGCGGGCCCTGGAGTTCACCAACATCTAC CGGAGCTGGGGGCGCGGGCCTTGGAGTTCACCAACATCTAC Direct Loss 0.966689712015549 0 0.71608555 0 prediction 0.933379424031097 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43547605 chr20:43547605 synonymous SNV . 0 21 hm5C_associated_SNPs_47834 0 0 1 0 2 chromatin 0.500231745615029 0 0.4321711 0.000463491230058288 hm5C_site_3154 DeepMRMD:0.4321711;iRNA_m5C:0.000463491230058288 3155 chrX 130678425 130678425 1 + C T SKCM 130678425 + 130678405 130678445 41 TATGACCGTGTGGTTGCTATCAGCAATCCCCTGCGTTATTC TATGACCGTGTGGTTGCTATTAGCAATCCCCTGCGTTATTC Direct Loss 0.966683724105972 0 0.7726066 0 prediction 0.933367448211944 Functional Loss - OR13H1 ENSG00000171054 CDS Human protein_coding chrX:130678425 chrX:130678425 synonymous SNV . 0 21 hm5C_associated_SNPs_47835 0 0 0 0 0 exosome 0.50023160160259 0 0.5452132 0.000463203205179896 hm5C_site_3155 DeepMRMD:0.5452132;iRNA_m5C:0.000463203205179896 3156 chr5 150051173 150051173 1 + C A LUSC 150051173 + 150051153 150051193 41 TCCCAGATGCTGGCCGGAAGCGCCAGGAGGAAGGTGACTGG TCCCAGATGCTGGCCGGAAGAGCCAGGAGGAAGGTGACTGG Direct Loss 0.966679566942362 0 0.85019803 0 prediction 0.933359133884725 Functional Loss - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150051173 chr5:150051173 nonsynonymous SNV 0.081 0 21 hm5C_associated_SNPs_47836 0 0 0 0 2 exosome 0.500231643921028 0 0.70039606 0.000463287842056292 hm5C_site_3156 DeepMRMD:0.70039606;iRNA_m5C:0.000463287842056292 3157 chrX 51486939 51486939 1 + C T SKCM 51486939 + 51486919 51486959 41 CGGAGTTCGTGCCGTCCTTCCTGCGGGGCCCGACTCAGCCG CGGAGTTCGTGCCGTCCTTCTTGCGGGGCCCGACTCAGCCG Direct Loss 0.966653184230082 0 0.15517133 0 prediction 0.933306368460163 Functional Loss - GSPT2 ENSG00000189369 CDS Human protein_coding chrX:51486939 chrX:51486939 synonymous SNV . 0 21 hm5C_associated_SNPs_47837 0 0 0 0 0 Cytosol 0.500231647340462 0 0 0.000463294680923987 hm5C_site_3157 DeepMRMD:0;iRNA_m5C:0.000463294680923987 3158 chr1 109419670 109419670 1 + C G rs115082541 109419670 + 109419650 109419690 41 TAGGTGGCGGAGGGACGCTCCGGGAAAGCGAGGGGCGCTAC TAGGTGGCGGAGGGACGCTCGGGGAAAGCGAGGGGCGCTAC Direct Loss 0.966628785527331 0 0.90364087 0 prediction 0.933257571054662 Functional Loss - GPSM2 ENSG00000121957 UTR5 Human protein_coding chr1:109419670 chr1:109419670 . . 0 21 hm5C_associated_SNPs_47838 0 0 1 0 0 Endoplasmic reticulum 0.500231643920952 0 0.80728174 0.000463287841904192 hm5C_site_3158 DeepMRMD:0.80728174;iRNA_m5C:0.000463287841904192 3159 chr7 64170292 64170292 1 + C G rs534511350 64170292 + 64170272 64170312 41 GTGGGTGGATCACCTGAGGGCAGGAGTCTGAGACCAGCCTG GTGGGTGGATCACCTGAGGGGAGGAGTCTGAGACCAGCCTG Direct Loss 0.966598859219162 0 0.8944535 0 prediction 0.933197718438323 Functional Loss - ZNF107 ENSG00000196247 UTR3 Human protein_coding chr7:64170292 chr7:64170292 . . 0 21 hm5C_associated_SNPs_47839 0 0 0 0 0 Nucleus 0.500231643921108 0 0.788907 0.000463287842215943 hm5C_site_3159 DeepMRMD:0.788907;iRNA_m5C:0.000463287842215943 3160 chr1 248637368 248637368 1 + C T CESC 248637368 + 248637348 248637388 41 ATGAATTCTGCCGCCGGCCACAGGAAGGCCTTGGCCACCTG ATGAATTCTGCCGCCGGCCATAGGAAGGCCTTGGCCACCTG Direct Loss 0.966596235465991 0 0.5855375 0 prediction 0.933192470931982 Functional Loss - OR2T3 ENSG00000196539 CDS Human protein_coding chr1:248637368 chr1:248637368 synonymous SNV . 0 21 hm5C_associated_SNPs_47840 0 0 0 0 0 unknown 0.500231797220181 0 0.171075 0.000463594440362591 hm5C_site_3160 DeepMRMD:0.171075;iRNA_m5C:0.000463594440362591 3161 chr16 23200920 23200920 1 + C T UCEC 23200920 + 23200900 23200940 41 ACAGGGAGGAAGCGGAAAGTCGGCGGTAGCATCATTCACAA ACAGGGAGGAAGCGGAAAGTTGGCGGTAGCATCATTCACAA Direct Loss 0.966583860193378 0 0.6884077 0 prediction 0.933167720386756 Functional Loss - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23200920 chr16:23200920 synonymous SNV . 0 21 hm5C_associated_SNPs_47841 0 0 0 0 1 exosome 0.500231644028865 0 0.3768154 0.000463288057730882 hm5C_site_3161 DeepMRMD:0.3768154;iRNA_m5C:0.000463288057730882 3162 chr17 60526060 60526060 1 + C A OV 60526060 + 60526040 60526080 41 GTTTGGATTCAGTGCAAATACTGCAAGCCCCTTCTGTCCAG GTTTGGATTCAGTGCAAATAATGCAAGCCCCTTCTGTCCAG Direct Loss 0.966570006265657 0 0.1996085 0 prediction 0.933140012531314 Functional Loss - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60526060 chr17:60526060 stopgain 0.913 1 21 hm5C_associated_SNPs_47842 0 0 0 0 0 Ribosome 0.50023164392621 0 0 0.000463287852420224 hm5C_site_3162 DeepMRMD:0;iRNA_m5C:0.000463287852420224 3163 chr10 74034073 74034073 1 + C T rs11539947 74034073 + 74034053 74034093 41 GATCGGCCGCCGCGCTCAGCCTGGGGGTCGGCGACCCGGGA GATCGGCCGCCGCGCTCAGCTTGGGGGTCGGCGACCCGGGA Direct Loss 0.966565422786509 0 0.9063225 0 prediction 0.933130845573018 Functional Loss - DDIT4 ENSG00000168209 CDS Human protein_coding chr10:74034073 chr10:74034073 synonymous SNV . 0 21 hm5C_associated_SNPs_47843 0 0 1 0 0 Ribosome 0.500231643912368 0 0.812645 0.000463287824735703 hm5C_site_3163 DeepMRMD:0.812645;iRNA_m5C:0.000463287824735703 3164 chr17 7608955 7608955 1 + C T SKCM 7608955 + 7608935 7608975 41 GGGCCGGGGGGCGTGCGAGTCGGGGCCCTGCTGCTGCTGGG GGGCCGGGGGGCGTGCGAGTTGGGGCCCTGCTGCTGCTGGG Direct Loss 0.966546567898528 0 0.9297886 0 prediction 0.933093135797056 Functional Loss - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7608955 chr17:7608955 synonymous SNV . 0 21 hm5C_associated_SNPs_47844 0 0 0 0 1 exosome 0.500231644036011 0 0.8595772 0.000463288072022561 hm5C_site_3164 DeepMRMD:0.8595772;iRNA_m5C:0.000463288072022561 3165 chr19 7986398 7986398 1 + C T rs199650219 7986398 + 7986378 7986418 41 GCCTTCAGGGACCAAGGCGCCGGGAGGCACAGCCCCCAGCC GCCTTCAGGGACCAAGGCGCTGGGAGGCACAGCCCCCAGCC Direct Loss 0.966540794393635 0 0.9150927 0 prediction 0.933081588787271 Functional Loss - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986398 chr19:7986398 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_47845 0 0 0 0 2 Ribosome 0.500231643921067 0 0.8301854 0.000463287842134008 hm5C_site_3165 DeepMRMD:0.8301854;iRNA_m5C:0.000463287842134008 3166 chr2 3727534 3727534 1 + C T COAD 3727534 + 3727514 3727554 41 CGTGGACGTTTCTTACTTCACGGGAGATTACGCTCCTCGAG CGTGGACGTTTCTTACTTCATGGGAGATTACGCTCCTCGAG Direct Loss 0.966536612223779 0 0.9307258 0 prediction 0.933073224447558 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3727534 chr2:3727534 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_47846 0 0 0 0 2 unknown 0.50022901702947 0 0.8614516 0.00045803405893996 hm5C_site_3166 DeepMRMD:0.8614516;iRNA_m5C:0.00045803405893996 3167 chr12 69651614 69651614 1 + C T SKCM 69651614 + 69651594 69651634 41 TAGAGGACGGGGCCGTTTTCCAGGGGCTGTTCCTGGTGGGG TAGAGGACGGGGCCGTTTTCTAGGGGCTGTTCCTGGTGGGG Direct Loss 0.966530009072595 0 0.95940006 0 prediction 0.933060018145189 Functional Loss - CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69651614 chr12:69651614 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_47847 0 0 1 0 1 Nucleus 0.500231643858681 0 0.91880012 0.000463287717361816 hm5C_site_3167 DeepMRMD:0.91880012;iRNA_m5C:0.000463287717361816 3168 chrX 47032563 47032563 1 + C T UCEC 47032563 + 47032543 47032583 41 AGTCGCACGGCGTGCAAGCACGGGAGGTTCGGCTGATGCGG AGTCGCACGGCGTGCAAGCATGGGAGGTTCGGCTGATGCGG Direct Loss 0.966520508728313 0 0.9065907 0 prediction 0.933041017456627 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47032563 chrX:47032563 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47848 0 0 1 0 2 Ribosome 0.500231367914104 0 0.8131814 0.000462735828208327 hm5C_site_3168 DeepMRMD:0.8131814;iRNA_m5C:0.000462735828208327 3169 chr10 122216821 122216821 1 + C T UCEC 122216821 + 122216801 122216841 41 GCTGCTCCGGCCGCACCATGCGGGAGCTGGCCATTGAGATC GCTGCTCCGGCCGCACCATGTGGGAGCTGGCCATTGAGATC Direct Loss 0.966515149443843 0 0.9391763 0 prediction 0.933030298887687 Functional Loss - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122216821 chr10:122216821 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_47849 0 0 0 0 1 Cytosol 0.500231643921048 0 0.8783526 0.000463287842095816 hm5C_site_3169 DeepMRMD:0.8783526;iRNA_m5C:0.000463287842095816 3170 chr1 153233697 153233697 1 + C G rs533773105 153233697 + 153233677 153233717 41 CGGTGGGAGCGTCAAGTACTCCGGAGGCGGCGGCTCCTCCG CGGTGGGAGCGTCAAGTACTGCGGAGGCGGCGGCTCCTCCG Direct Loss 0.966508944716292 0 0.9222656 0 prediction 0.933017889432584 Functional Loss - LOR ENSG00000203782 CDS Human protein_coding chr1:153233697 chr1:153233697 nonsynonymous SNV 0.197 1 21 hm5C_associated_SNPs_47850 0 0 0 0 0 exosome 0.500231674581508 0 0.8445312 0.00046334916301638 hm5C_site_3170 DeepMRMD:0.8445312;iRNA_m5C:0.00046334916301638 3171 chr2 27373035 27373035 1 + C A BLCA 27373035 + 27373015 27373055 41 GCGCGGGAGCGGAGCCGGGTCAGGACGCTGCGCCAGGCCTT GCGCGGGAGCGGAGCCGGGTAAGGACGCTGCGCCAGGCCTT Direct Loss 0.966471971709635 0 0.8930559 0 prediction 0.932943943419269 Functional Loss - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373035 chr2:27373035 synonymous SNV . 0 21 hm5C_associated_SNPs_47851 0 0 0 0 1 exosome 0.500231643921092 0 0.7861118 0.000463287842184856 hm5C_site_3171 DeepMRMD:0.7861118;iRNA_m5C:0.000463287842184856 3172 chr6 28327526 28327526 1 + C T SKCM 28327526 + 28327506 28327546 41 GCTTCCGAGGCTTCCGCTACCCGGAGGCTGCAGGCCCCCGC GCTTCCGAGGCTTCCGCTACTCGGAGGCTGCAGGCCCCCGC Direct Loss 0.966458183431367 0 0.9406064 0 prediction 0.932916366862734 Functional Loss - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28327526 chr6:28327526 nonsynonymous SNV 0.008 2 21 hm5C_associated_SNPs_47852 0 0 0 0 0 exosome 0.500231643921098 0 0.8812128 0.000463287842196403 hm5C_site_3172 DeepMRMD:0.8812128;iRNA_m5C:0.000463287842196403 3173 chr20 35177948 35177948 1 + C T rs187425725 35177948 + 35177928 35177968 41 ACCAAGGGAAGGCCCCATTCCGGGGCTGTTCCCCGAGGAGG ACCAAGGGAAGGCCCCATTCTGGGGCTGTTCCCCGAGGAGG Direct Loss 0.966439070917847 0 0.92593783 0 prediction 0.932878141835694 Functional Loss - DLGAP4-AS1 ENSG00000259716 ncRNA_exonic Human other chr20:35177948 chr20:35177948 . . 0 21 hm5C_associated_SNPs_47853 0 0 0 0 0 unknown 0.500231643921092 0 0.85187566 0.000463287842184856 hm5C_site_3173 DeepMRMD:0.85187566;iRNA_m5C:0.000463287842184856 3174 chr10 129875949 129875949 1 + C T SKCM 129875949 + 129875929 129875969 41 TTCCACGGCTGGCCTGAGATCGGGATTCCCGCCGAGGGCAA TTCCACGGCTGGCCTGAGATTGGGATTCCCGCCGAGGGCAA Direct Loss 0.966415988878342 0 0.9202667 0 prediction 0.932831977756683 Functional Loss - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129875949 chr10:129875949 synonymous SNV . 0 21 hm5C_associated_SNPs_47854 0 0 0 0 2 Ribosome 0.500231643921092 0 0.8405334 0.000463287842184856 hm5C_site_3174 DeepMRMD:0.8405334;iRNA_m5C:0.000463287842184856 3175 chr15 48413289 48413289 1 + C T STAD 48413289 + 48413269 48413309 41 GCGAGAAGGGCTCTGTTGCTCGGCATCCTGTGGGCCACTGC GCGAGAAGGGCTCTGTTGCTTGGCATCCTGTGGGCCACTGC Direct Loss 0.96640663477643 0 0.3572976 0 prediction 0.932813269552859 Functional Loss - SLC24A5 ENSG00000188467 CDS Human protein_coding chr15:48413289 chr15:48413289 synonymous SNV . 0 21 hm5C_associated_SNPs_47855 0 0 0 0 1 exosome 0.500231643910454 0 0 0.000463287820908098 hm5C_site_3175 DeepMRMD:0;iRNA_m5C:0.000463287820908098 3176 chr5 78532658 78532658 1 + C G rs3733893 78532658 + 78532638 78532678 41 GAGCGGCTCCCGGGAGCAAGCGGGGGCGCGAGGGGGCGCCG GAGCGGCTCCCGGGAGCAAGGGGGGGCGCGAGGGGGCGCCG Direct Loss 0.966397115467384 0 0.95301956 0 prediction 0.932794230934768 Functional Loss - JMY ENSG00000152409 CDS Human protein_coding chr5:78532658 chr5:78532658 nonsynonymous SNV 0.988 0 21 hm5C_associated_SNPs_47856 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0 0.90603912 0.000463287842184856 hm5C_site_3176 DeepMRMD:0.90603912;iRNA_m5C:0.000463287842184856 3177 chr2 220099691 220099691 1 + C A HNSC 220099691 + 220099671 220099711 41 AGAAGGAGAAAAGCCGAGACCAGGAGGCTGGGGCACATCGG AGAAGGAGAAAAGCCGAGACAAGGAGGCTGGGGCACATCGG Direct Loss 0.966374846493136 0 0.91407263 0 prediction 0.932749692986272 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220099691 chr2:220099691 nonsynonymous SNV 0.032 0 21 hm5C_associated_SNPs_47857 0 0 1 1 0 chromatin 0.500231643921092 0 0.82814526 0.000463287842184856 hm5C_site_3177 DeepMRMD:0.82814526;iRNA_m5C:0.000463287842184856 3178 chrX 30268665 30268665 1 + C A LUSC 30268665 + 30268645 30268685 41 GTGAGAAACGCCGCAAGGCGCGAGAGGAGACCCAGGGTCTC GTGAGAAACGCCGCAAGGCGAGAGAGGAGACCCAGGGTCTC Direct Loss 0.966371138571312 0 0.7528156 0 prediction 0.932742277142624 Functional Loss - MAGEB1 ENSG00000214107 CDS Human protein_coding chrX:30268665 chrX:30268665 synonymous SNV . 0 21 hm5C_associated_SNPs_47858 0 0 0 0 0 nucleolus 0.500231643921092 0 0.5056312 0.000463287842184856 hm5C_site_3178 DeepMRMD:0.5056312;iRNA_m5C:0.000463287842184856 3179 chr9 79634932 79634932 1 + C T GBM 79634932 + 79634912 79634952 41 CGACCATACTCACTTGCACGCGGGAAGCACCAAGAGCGCGC CGACCATACTCACTTGCACGTGGGAAGCACCAAGAGCGCGC Direct Loss 0.966359204765414 0 0.89693034 0 prediction 0.932718409530828 Functional Loss - FOXB2 ENSG00000204612 CDS Human protein_coding chr9:79634932 chr9:79634932 nonsynonymous SNV 0.921 1 21 hm5C_associated_SNPs_47859 0 0 0 0 0 unknown 0.500231653358217 0 0.79386068 0.000463306716434575 hm5C_site_3179 DeepMRMD:0.79386068;iRNA_m5C:0.000463306716434575 3180 chr19 33072102 33072102 1 + C G rs75928255 33072102 + 33072082 33072122 41 GCGAGCGCCTGCGCAGTGGTCAAGGCCGCGCTCGCGCCGAG GCGAGCGCCTGCGCAGTGGTGAAGGCCGCGCTCGCGCCGAG Direct Loss 0.966343901024946 0 0.897685 0 prediction 0.932687802049891 Functional Loss - PDCD5 ENSG00000105185 UTR5 Human protein_coding chr19:33072102 chr19:33072102 . . 0 21 hm5C_associated_SNPs_47860 0 0 1 0 0 Ribosome 0.500232656363529 0 0.79537 0.000465312727058409 hm5C_site_3180 DeepMRMD:0.79537;iRNA_m5C:0.000465312727058409 3181 chr17 76134191 76134191 1 + C T SKCM 76134191 + 76134171 76134211 41 GTGGCGGGGCAGACGGTCACCTGGATGGGCCTCTTCTACTG GTGGCGGGGCAGACGGTCACTTGGATGGGCCTCTTCTACTG Direct Loss 0.966327579661039 0 0.5340781 0 prediction 0.932655159322078 Functional Loss - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76134191 chr17:76134191 synonymous SNV . 0 21 hm5C_associated_SNPs_47861 0 0 1 0 0 chromatin 0.500231643921092 0 0.0681562 0.000463287842184856 hm5C_site_3181 DeepMRMD:0.0681562;iRNA_m5C:0.000463287842184856 3182 chr3 10157440 10157440 1 + C T BRCA 10157440 + 10157420 10157460 41 TTCACCAGGACTGGGCTAACCGGGAGTACATTGAGATAATC TTCACCAGGACTGGGCTAACTGGGAGTACATTGAGATAATC Direct Loss 0.966324746928973 0 0.89549077 0 prediction 0.932649493857945 Functional Loss - BRK1 ENSG00000254999 CDS Human protein_coding chr3:10157440 chr3:10157440 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_47862 0 0 1 0 1 Ribosome 0.50023164392109 0 0.79098154 0.000463287842180859 hm5C_site_3182 DeepMRMD:0.79098154;iRNA_m5C:0.000463287842180859 3183 chr1 44137428 44137428 1 + C T LUAD 44137428 + 44137408 44137448 41 CTGCCGAGCCCAAGGGCAAACGGGAGTTCTCACTGTGCACA CTGCCGAGCCCAAGGGCAAATGGGAGTTCTCACTGTGCACA Direct Loss 0.966304037593188 0 0.88177574 0 prediction 0.932608075186377 Functional Loss - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44137428 chr1:44137428 nonsynonymous SNV 0.659 1 21 hm5C_associated_SNPs_47863 0 0 0 0 0 Nucleus 0.500231643880463 0 0.76355148 0.000463287760925413 hm5C_site_3183 DeepMRMD:0.76355148;iRNA_m5C:0.000463287760925413 3184 chr11 57958226 57958226 1 + C T DLBC 57958226 + 57958206 57958246 41 CTGGCTGTGCTGTGGGAGCACGGCACAACCATCTCCCAGGC CTGGCTGTGCTGTGGGAGCATGGCACAACCATCTCCCAGGC Direct Loss 0.966297134725786 0 0.24413022 0 prediction 0.932594269451573 Functional Loss - OR9Q2 ENSG00000186513 CDS Human protein_coding chr11:57958226 chr11:57958226 synonymous SNV . 0 21 hm5C_associated_SNPs_47864 0 0 0 0 0 unknown 0.500231644610909 0 0 0.000463289221818597 hm5C_site_3184 DeepMRMD:0;iRNA_m5C:0.000463289221818597 3185 chr8 39836622 39836622 1 + C T LUSC 39836622 + 39836602 39836642 41 GCCAGTTCCTGAAGGGTCACCGGGAGCAGCGCCTGGCCCAC GCCAGTTCCTGAAGGGTCACTGGGAGCAGCGCCTGGCCCAC Direct Loss 0.966288511620133 0 0.92608756 0 prediction 0.932577023240266 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39836622 chr8:39836622 nonsynonymous SNV 0.908 3 21 hm5C_associated_SNPs_47865 0 0 0 0 2 exosome 0.500231643685903 0 0.85217512 0.000463287371805343 hm5C_site_3185 DeepMRMD:0.85217512;iRNA_m5C:0.000463287371805343 3186 chr22 38212245 38212245 1 + C T STAD 38212245 + 38212225 38212265 41 AGCTGCTGGCTTCACTATCTCGGGAGCCAGTCACCCCATCT AGCTGCTGGCTTCACTATCTTGGGAGCCAGTCACCCCATCT Direct Loss 0.966276979637283 0 0.9491142 0 prediction 0.932553959274566 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212245 chr22:38212245 nonsynonymous SNV 0.341 1 21 hm5C_associated_SNPs_47866 0 0 0 0 2 Cytosol 0.500231643939437 0 0.8982284 0.000463287878874175 hm5C_site_3186 DeepMRMD:0.8982284;iRNA_m5C:0.000463287878874175 3187 chr8 55370866 55370866 1 + C T STAD 55370866 + 55370846 55370886 41 GCGAACAGCGGAGCACCGGCCGGGGCCGCGGGCCGAGCCAA GCGAACAGCGGAGCACCGGCTGGGGCCGCGGGCCGAGCCAA Direct Loss 0.96627612353005 0 0.8992045 0 prediction 0.9325522470601 Functional Loss - SOX17 ENSG00000164736 CDS Human protein_coding chr8:55370866 chr8:55370866 synonymous SNV . 0 21 hm5C_associated_SNPs_47867 0 0 0 0 0 Cytosol 0.500231643921291 0 0.798409 0.000463287842582316 hm5C_site_3187 DeepMRMD:0.798409;iRNA_m5C:0.000463287842582316 3188 chr6 134210745 134210745 1 + C T UCEC 134210745 + 134210725 134210765 41 ACCAAGAAGAGCCCCCTGAGCGGGGTCAGCCAGGAGGGGAA ACCAAGAAGAGCCCCCTGAGTGGGGTCAGCCAGGAGGGGAA Direct Loss 0.966270770079655 0 0.91506803 0 prediction 0.932541540159311 Functional Loss - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134210745 chr6:134210745 synonymous SNV . 0 21 hm5C_associated_SNPs_47868 0 0 0 0 0 exosome 0.500231643921092 0 0.83013606 0.000463287842184856 hm5C_site_3188 DeepMRMD:0.83013606;iRNA_m5C:0.000463287842184856 3189 chr19 518957 518957 1 + C A rs117112129 518957 + 518937 518977 41 CGGCGGGCGCAGGAAGAGGCCGGGGCTGGACGGGCGCACCT CGGCGGGCGCAGGAAGAGGCAGGGGCTGGACGGGCGCACCT Direct Loss 0.966264653774862 0 0.90415 0 prediction 0.932529307549725 Functional Loss - TPGS1 ENSG00000141933 CDS Human protein_coding chr19:518957 chr19:518957 nonsynonymous SNV 0.975 1 21 hm5C_associated_SNPs_47869 0 0 1 0 1 exosome 0.500231645305324 0 0.8083 0.000463290610647205 hm5C_site_3189 DeepMRMD:0.8083;iRNA_m5C:0.000463290610647205 3190 chr15 102358672 102358672 1 + C T COAD 102358672 + 102358652 102358692 41 AGCACAAGGCCATCTCCTTTCGGGGATGTATTACTCAGATC AGCACAAGGCCATCTCCTTTTGGGGATGTATTACTCAGATC Direct Loss 0.96625962732539 0 0.93442285 0 prediction 0.932519254650779 Functional Loss - OR4F15 ENSG00000182854 CDS Human protein_coding chr15:102358672 chr15:102358672 nonsynonymous SNV 0.942 0 21 hm5C_associated_SNPs_47870 0 0 0 0 0 unknown 0.500231643921093 0 0.8688457 0.0004632878421853 hm5C_site_3190 DeepMRMD:0.8688457;iRNA_m5C:0.0004632878421853 3191 chr2 219222364 219222364 1 + C T KIRP 219222364 + 219222344 219222384 41 AGGTGCAGAGAGGGAAATACCAGGAAAAACTCGGCATGCTG AGGTGCAGAGAGGGAAATACTAGGAAAAACTCGGCATGCTG Direct Loss 0.966246730842784 0 0.88941205 0 prediction 0.932493461685569 Functional Loss - CATIP ENSG00000158428 CDS Human protein_coding chr2:219222364 chr2:219222364 stopgain 0.045 0 21 hm5C_associated_SNPs_47871 0 0 0 0 1 exosome 0.500231643921187 0 0.7788241 0.00046328784237426 hm5C_site_3191 DeepMRMD:0.7788241;iRNA_m5C:0.00046328784237426 3192 chr11 88242027 88242027 1 + C G rs569668690 88242027 + 88242007 88242047 41 GCCGCGGGCTGCGCGCCTCCCGTGACTTCGATGGCCGGCAG GCCGCGGGCTGCGCGCCTCCGGTGACTTCGATGGCCGGCAG Direct Loss 0.966234264037354 0 0.6309047 0 prediction 0.932468528074708 Functional Loss - GRM5 ENSG00000168959 CDS Human protein_coding chr11:88242027 chr11:88242027 synonymous SNV . 0 21 hm5C_associated_SNPs_47872 0 0 0 0 1 Cytosol 0.50023163714106 0 0.2618094 0.000463274282120896 hm5C_site_3192 DeepMRMD:0.2618094;iRNA_m5C:0.000463274282120896 3193 chr10 29580889 29580889 1 + C A UCEC 29580889 + 29580869 29580909 41 TGCAAACTGGCAAAAATATTCTCGAGGGCTGGCCTGGACAA TGCAAACTGGCAAAAATATTATCGAGGGCTGGCCTGGACAA Direct Loss 0.96622743969463 0 0.5413528 0 prediction 0.93245487938926 Functional Loss - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29580889 chr10:29580889 nonsynonymous SNV 0.356 1 21 hm5C_associated_SNPs_47873 0 0 0 0 1 unknown 0.500231643921011 0 0.0827055999999999 0.000463287842021654 hm5C_site_3193 DeepMRMD:0.0827055999999999;iRNA_m5C:0.000463287842021654 3194 chr8 134237661 134237661 1 + C T STAD 134237661 + 134237641 134237681 41 GGTGAGGTGGAGGCATGGCACAGGAACTGCATAGCCTACAC GGTGAGGTGGAGGCATGGCATAGGAACTGCATAGCCTACAC Direct Loss 0.966216772738007 0 0.77422273 0 prediction 0.932433545476015 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134237661 chr8:134237661 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_47874 0 0 0 0 1 nucleus 0.500231643919052 0 0.54844546 0.00046328783810301 hm5C_site_3194 DeepMRMD:0.54844546;iRNA_m5C:0.00046328783810301 3195 chr12 108956450 108956450 1 + C A rs142514490 108956450 + 108956430 108956470 41 GGGCGGCATCGGCTCTGCTGCTGCGGAGCCCCCGCCTGCCC GGGCGGCATCGGCTCTGCTGATGCGGAGCCCCCGCCTGCCC Direct Loss 0.966210075395606 0 0.8571076 0 prediction 0.932420150791212 Functional Loss - ISCU ENSG00000136003 CDS Human protein_coding chr12:108956450 chr12:108956450 nonsynonymous SNV 0.844 1 21 hm5C_associated_SNPs_47875 1 0 1 0 1 Cytosol 0.500231642111985 0 0.7142152 0.000463284223970906 hm5C_site_3195 DeepMRMD:0.7142152;iRNA_m5C:0.000463284223970906 not specified not specified 3196 chr16 89650455 89650455 1 + C T BLCA 89650455 + 89650435 89650475 41 GGTGATCGCCGAGGACATCTCGGGGAACAACGGCTACGTGG GGTGATCGCCGAGGACATCTTGGGGAACAACGGCTACGTGG Direct Loss 0.96620958615539 0 0.9470296 0 prediction 0.93241917231078 Functional Loss - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89650455 chr16:89650455 nonsynonymous SNV 0.971 2 21 hm5C_associated_SNPs_47876 0 0 1 0 2 Nucleus 0.500231643905017 0 0.8940592 0.000463287810034574 hm5C_site_3196 DeepMRMD:0.8940592;iRNA_m5C:0.000463287810034574 3197 chr8 54852169 54852169 1 + C A THCA 54852169 + 54852149 54852189 41 AGCGGATGGAGATGCGGAAGCGGCAGATGCCCGCCGCCCAG AGCGGATGGAGATGCGGAAGAGGCAGATGCCCGCCGCCCAG Direct Loss 0.966205907454641 0 0.8993614 0 prediction 0.932411814909282 Functional Loss - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54852169 chr8:54852169 synonymous SNV . 0 21 hm5C_associated_SNPs_47877 0 0 0 0 1 chromatin 0.500231643854512 0 0.7987228 0.000463287709023152 hm5C_site_3197 DeepMRMD:0.7987228;iRNA_m5C:0.000463287709023152 3198 chr21 41137504 41137504 1 + C A SARC 41137504 + 41137484 41137524 41 CATAGAAGGCCCCCAAAATGCAAGAGTCCTGAAGGGCTCCC CATAGAAGGCCCCCAAAATGAAAGAGTCCTGAAGGGCTCCC Direct Loss 0.966202281189705 0 0.45026574 0 prediction 0.93240456237941 Functional Loss - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41137504 chr21:41137504 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47878 0 0 0 0 1 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3198 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3199 chr3 160395613 160395613 1 + C G BLCA 160395613 + 160395593 160395633 41 GCAACCCTGCTGTGCCCTCACAGGGGAGGGGCTGGCCCAGG GCAACCCTGCTGTGCCCTCAGAGGGGAGGGGCTGGCCCAGG Direct Loss 0.966191072254672 0 0.93555236 0 prediction 0.932382144509344 Functional Loss - ARL14 ENSG00000179674 CDS Human protein_coding chr3:160395613 chr3:160395613 nonsynonymous SNV 0.047 4 21 hm5C_associated_SNPs_47879 0 0 0 0 0 exosome 0.500231643921092 0 0.87110472 0.000463287842184856 hm5C_site_3199 DeepMRMD:0.87110472;iRNA_m5C:0.000463287842184856 3200 chr17 16593739 16593739 1 + C T UCEC 16593739 + 16593719 16593759 41 CCTCCTGGGGTGGAGAAAAGCGGGGAGGGGCTGAGGGGTCT CCTCCTGGGGTGGAGAAAAGTGGGGAGGGGCTGAGGGGTCT Direct Loss 0.966178449771152 0 0.9230677 0 prediction 0.932356899542305 Functional Loss - CCDC144A ENSG00000170160;ENSG00000266302 CDS Human other chr17:16593739 chr17:16593739 nonsynonymous SNV 0.012 1 21 hm5C_associated_SNPs_47880 0 0 0 0 0 exosome 0.500231643921092 0 0.8461354 0.000463287842184856 hm5C_site_3200 DeepMRMD:0.8461354;iRNA_m5C:0.000463287842184856 3201 chr8 37963121 37963121 1 + C G rs199684478 37963121 + 37963101 37963141 41 AGCGGGTGCCGGGCCTGGCCCAGGAGCGGTCGCAAATGCAA AGCGGGTGCCGGGCCTGGCCGAGGAGCGGTCGCAAATGCAA Direct Loss 0.966174978138186 0 0.6034286 0 prediction 0.932349956276371 Functional Loss - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37963121 chr8:37963121 nonsynonymous SNV 0.020 1 21 hm5C_associated_SNPs_47881 0 0 1 0 0 chromatin 0.500231643921092 0 0.2068572 0.000463287842184856 hm5C_site_3201 DeepMRMD:0.2068572;iRNA_m5C:0.000463287842184856 3202 chr22 42666026 42666026 1 + C T rs187166731 42666026 + 42666006 42666046 41 CACCCAAGGCCTCGCGCGACCAGCAGGTAGACCTTCCCTCC CACCCAAGGCCTCGCGCGACTAGCAGGTAGACCTTCCCTCC Direct Loss 0.966170881584307 0 0.7547095 0 prediction 0.932341763168614 Functional Loss - OGFRP1 ENSG00000182057 ncRNA_exonic Human lincRNA chr22:42666026 chr22:42666026 . . 0 21 hm5C_associated_SNPs_47882 0 1 0 1 1 unknown 0.500231643921092 0 0.509419 0.000463287842184856 hm5C_site_3202 DeepMRMD:0.509419;iRNA_m5C:0.000463287842184856 3203 chr2 29258406 29258406 1 + C T HNSC 29258406 + 29258386 29258426 41 GGGAGATGGTGGAGCAGCTACGGGAGCTGACACGGCTGCTG GGGAGATGGTGGAGCAGCTATGGGAGCTGACACGGCTGCTG Direct Loss 0.9661590375565 0 0.89267063 0 prediction 0.932318075112999 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29258406 chr2:29258406 nonsynonymous SNV 0.360 3 21 hm5C_associated_SNPs_47883 0 0 0 0 1 unknown 0.500231643921091 0 0.78534126 0.000463287842182192 hm5C_site_3203 DeepMRMD:0.78534126;iRNA_m5C:0.000463287842182192 3204 chr8 22298611 22298611 1 + C T rs182378967 22298611 + 22298591 22298631 41 GCGTGCACGAGGGCCCGGGCCGCGAGCAGCCGCGGCCGTCC GCGTGCACGAGGGCCCGGGCTGCGAGCAGCCGCGGCCGTCC Direct Loss 0.966140595875115 0 0.6078217 0 prediction 0.932281191750229 Functional Loss - PPP3CC ENSG00000120910 UTR5 Human protein_coding chr8:22298611 chr8:22298611 . . 0 21 hm5C_associated_SNPs_47884 0 0 0 0 0 Cytosol 0.500231643920569 0 0.2156434 0.000463287841137694 hm5C_site_3204 DeepMRMD:0.2156434;iRNA_m5C:0.000463287841137694 3205 chr3 127788409 127788409 1 + C T rs147269024 127788409 + 127788389 127788429 41 GGCGCCATTGGGTCTGGAACCGGGATCCTGCTCGCAGTCAC GGCGCCATTGGGTCTGGAACTGGGATCCTGCTCGCAGTCAC Direct Loss 0.96610345369286 0 0.9072597 0 prediction 0.93220690738572 Functional Loss - SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127788409 chr3:127788409 synonymous SNV . 0 21 hm5C_associated_SNPs_47885 0 0 1 0 1 Ribosome 0.500231654195319 0 0.8145194 0.000463308390637573 hm5C_site_3205 DeepMRMD:0.8145194;iRNA_m5C:0.000463308390637573 3206 chr10 74034674 74034674 1 + C T UCEC 74034674 + 74034654 74034694 41 ACAGCGAGCCGTGCGGCCTGCGGGGGGCGCTGCTGGACGTC ACAGCGAGCCGTGCGGCCTGTGGGGGGCGCTGCTGGACGTC Direct Loss 0.966091359576394 0 0.9264111 0 prediction 0.932182719152789 Functional Loss - DDIT4 ENSG00000168209 CDS Human protein_coding chr10:74034674 chr10:74034674 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47886 0 0 1 0 0 Ribosome 0.500229822597997 0 0.8528222 0.000459645195994396 hm5C_site_3206 DeepMRMD:0.8528222;iRNA_m5C:0.000459645195994396 3207 chr1 248020615 248020615 1 + C T SKCM 248020615 + 248020595 248020635 41 GCCCGGTGTGCCTGGATTTCCTGCAGGAGCCGGTCAGCGTG GCCCGGTGTGCCTGGATTTCTTGCAGGAGCCGGTCAGCGTG Direct Loss 0.966085168917317 0 0.36701778 0 prediction 0.932170337834633 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248020615 chr1:248020615 synonymous SNV . 0 21 hm5C_associated_SNPs_47887 0 0 1 0 0 Cytosol 0.500231650552477 0 0 0.000463301104953517 hm5C_site_3207 DeepMRMD:0;iRNA_m5C:0.000463301104953517 3208 chr4 83978134 83978134 1 + C T BLCA 83978134 + 83978114 83978154 41 TGAAGATTGCTAGGCTATATCTGGAGGATGATGATCCAGTC TGAAGATTGCTAGGCTATATTTGGAGGATGATGATCCAGTC Direct Loss 0.966074206614877 0 0.9077805 0 prediction 0.932148413229755 Functional Loss - COPS4 ENSG00000138663 CDS Human protein_coding chr4:83978134 chr4:83978134 synonymous SNV . 0 21 hm5C_associated_SNPs_47888 0 0 1 0 2 Ribosome 0.500231644674961 0 0.815561 0.000463289349921681 hm5C_site_3208 DeepMRMD:0.815561;iRNA_m5C:0.000463289349921681 3209 chr7 130002336 130002336 1 + C T COAD 130002336 + 130002316 130002356 41 TTGACACTGGAATTCACTCCCGGGAGTGGATCACCCATGCC TTGACACTGGAATTCACTCCTGGGAGTGGATCACCCATGCC Direct Loss 0.966071442383387 0 0.9050261 0 prediction 0.932142884766773 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002336 chr7:130002336 nonsynonymous SNV 0.986 4 21 hm5C_associated_SNPs_47889 0 0 0 0 2 exosome 0.500231643921092 0 0.8100522 0.000463287842184856 hm5C_site_3209 DeepMRMD:0.8100522;iRNA_m5C:0.000463287842184856 3210 chr19 11998756 11998756 1 + C T rs3810315 11998756 + 11998736 11998776 41 GCTATGCCCTGCTGTAGTCACAGGAGGTGTAGAGAGGACCC GCTATGCCCTGCTGTAGTCATAGGAGGTGTAGAGAGGACCC Direct Loss 0.966067600614944 0 0.8922601 0 prediction 0.932135201229887 Functional Loss - ZNF69 ENSG00000198429 CDS Human protein_coding chr19:11998756 chr19:11998756 synonymous SNV . 0 21 hm5C_associated_SNPs_47890 0 0 1 0 1 Nucleus 0.500231643594096 0 0.7845202 0.000463287188191774 hm5C_site_3210 DeepMRMD:0.7845202;iRNA_m5C:0.000463287188191774 3211 chr19 757829 757829 1 + C T UCEC 757829 + 757809 757849 41 CCAAGGAGACGCCCATCGAGCGGGAGATCCGTCTGGCTCAG CCAAGGAGACGCCCATCGAGTGGGAGATCCGTCTGGCTCAG Direct Loss 0.966063455123311 0 0.909583 0 prediction 0.932126910246622 Functional Loss - MISP ENSG00000099812 CDS Human protein_coding chr19:757829 chr19:757829 nonsynonymous SNV 0.893 4 21 hm5C_associated_SNPs_47891 0 0 0 0 0 nucleus 0.50023164392137 0 0.819166 0.000463287842739524 hm5C_site_3211 DeepMRMD:0.819166;iRNA_m5C:0.000463287842739524 3212 chr12 95228587 95228587 1 + C T PAAD 95228587 + 95228567 95228607 41 GCTGGACTGAGGAACTGAACCAGGAGGTCACTGGCCACATA GCTGGACTGAGGAACTGAACTAGGAGGTCACTGGCCACATA Direct Loss 0.966059886395803 0 0.9154813 0 prediction 0.932119772791606 Functional Loss - KRT19P2 ENSG00000216306 ncRNA_exonic Human transcribed_processed_pseudogene chr12:95228587 chr12:95228587 . . 0 21 hm5C_associated_SNPs_47892 0 0 0 0 0 unknown 0.500231643951984 0 0.8309626 0.000463287903968546 hm5C_site_3212 DeepMRMD:0.8309626;iRNA_m5C:0.000463287903968546 3213 chr1 100489455 100489455 1 + C G rs200769234 100489455 + 100489435 100489475 41 CACCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAA CACCTGTAGTCCCAGCTACTGGGGAGACTGAGGCAGGAGAA Direct Loss 0.966052948562308 0 0.9385382 0 prediction 0.932105897124616 Functional Loss - SLC35A3 ENSG00000117620 UTR3 Human protein_coding chr1:100489455 chr1:100489455 . . 0 21 hm5C_associated_SNPs_47893 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8770764 0.000463287842184856 hm5C_site_3213 DeepMRMD:0.8770764;iRNA_m5C:0.000463287842184856 3214 chr7 150069801 150069801 1 + G T ESCA 150069801 - 150069781 150069821 41 GCTGAAGGCTTTGCCGCAGTCGGGGCAGACGTAGGGCTTCT GCTGAAGGCTTTGCCGCAGTAGGGGCAGACGTAGGGCTTCT Direct Loss 0.966048314039791 0 0.9184339 0 prediction 0.932096628079582 Functional Loss - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150069801 chr7:150069801 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_47894 0 0 0 0 0 Endoplasmic reticulum 0.500231643921083 0 0.8368678 0.000463287842165983 hm5C_site_3214 DeepMRMD:0.8368678;iRNA_m5C:0.000463287842165983 3215 chr11 134147714 134147714 1 + C T UCEC 134147714 + 134147694 134147734 41 GGCCACAAGTTCCTGATCTTCGGGGGCTCCATCCACTATTT GGCCACAAGTTCCTGATCTTTGGGGGCTCCATCCACTATTT Direct Loss 0.966046753735109 0 0.9340498 0 prediction 0.932093507470218 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134147714 chr11:134147714 synonymous SNV . 0 21 hm5C_associated_SNPs_47895 0 0 0 0 1 Nucleus 0.500231643921088 0 0.8680996 0.000463287842176863 hm5C_site_3215 DeepMRMD:0.8680996;iRNA_m5C:0.000463287842176863 3216 chr7 75609790 75609790 1 + C T COAD 75609790 + 75609770 75609810 41 GGAGACAGACGTGGATCTCTCTGGGGTCAAGTTCGCGGTGA GGAGACAGACGTGGATCTCTTTGGGGTCAAGTTCGCGGTGA Direct Loss 0.966043421476211 0 0.930301 0 prediction 0.932086842952422 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75609790 chr7:75609790 nonsynonymous SNV 0.542 3 21 hm5C_associated_SNPs_47896 0 0 1 0 0 Nucleus 0.500231700260937 0 0.860602 0.000463400521873325 hm5C_site_3216 DeepMRMD:0.860602;iRNA_m5C:0.000463400521873325 3217 chr19 17379780 17379780 1 + C T rs144376330 17379780 + 17379760 17379800 41 AGCGAGGGTGAGGGTGAGGCCGCCAGTGCTGATGATGGGAG AGCGAGGGTGAGGGTGAGGCTGCCAGTGCTGATGATGGGAG Direct Loss 0.966012589667583 0 0.73461425 0 prediction 0.932025179335166 Functional Loss - BABAM1 ENSG00000105393 CDS Human protein_coding chr19:17379780 chr19:17379780 synonymous SNV . 0 21 hm5C_associated_SNPs_47897 0 0 1 0 0 Ribosome 0.500231641530195 0 0.4692285 0.00046328306038923 hm5C_site_3217 DeepMRMD:0.4692285;iRNA_m5C:0.00046328306038923 3218 chr7 6661703 6661703 1 + C T rs555355114 6661703 + 6661683 6661723 41 AGCGGCAGCTGCAGCTCAAACTGCAGGAGGAGCTGCAGCAG AGCGGCAGCTGCAGCTCAAATTGCAGGAGGAGCTGCAGCAG Direct Loss 0.966008239184718 0 0.45734015 0 prediction 0.932016478369437 Functional Loss - ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6661703 chr7:6661703 synonymous SNV . 0 21 hm5C_associated_SNPs_47898 0 0 1 0 0 exosome 0.500226966474787 0 0 0.000453932949573188 hm5C_site_3218 DeepMRMD:0;iRNA_m5C:0.000453932949573188 3219 chr1 112298569 112298569 1 + C T BLCA 112298569 + 112298549 112298589 41 GGCGGCGGCATTTGAAGCCTCGGGAGCCTTAGCAGCAGTGG GGCGGCGGCATTTGAAGCCTTGGGAGCCTTAGCAGCAGTGG Direct Loss 0.965998076933988 0 0.92873335 0 prediction 0.931996153867975 Functional Loss - DDX20 ENSG00000064703 CDS Human protein_coding chr1:112298569 chr1:112298569 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_47899 0 0 1 0 0 Ribosome 0.500231643921093 0 0.8574667 0.000463287842185078 hm5C_site_3219 DeepMRMD:0.8574667;iRNA_m5C:0.000463287842185078 3220 chr6 167753656 167753656 1 + C T COAD 167753656 + 167753636 167753676 41 TCTTGAAGCCGCTGGTTTTTCGCGTTGACGAGACCACCCCG TCTTGAAGCCGCTGGTTTTTTGCGTTGACGAGACCACCCCG Direct Loss 0.965965021643718 0 0.7602011 0 prediction 0.931930043287436 Functional Loss - TTLL2 ENSG00000120440 CDS Human protein_coding chr6:167753656 chr6:167753656 nonsynonymous SNV 0.003 3 21 hm5C_associated_SNPs_47900 0 0 0 0 1 Exosome 0.500231643491194 0 0.5204022 0.000463286982388178 hm5C_site_3220 DeepMRMD:0.5204022;iRNA_m5C:0.000463286982388178 3221 chr1 154207205 154207205 1 + C T COAD 154207205 + 154207185 154207225 41 GACGTGGTGGGCCACCAAGACGGGGGAGAGGTGCCAGCCGT GACGTGGTGGGCCACCAAGATGGGGGAGAGGTGCCAGCCGT Direct Loss 0.965927953496966 0 0.8993958 0 prediction 0.931855906993932 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207205 chr1:154207205 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47901 0 0 1 0 1 Nucleus 0.500231643861359 0 0.7987916 0.000463287722718198 hm5C_site_3221 DeepMRMD:0.7987916;iRNA_m5C:0.000463287722718198 3222 chr5 178454513 178454513 1 + C A STAD 178454513 + 178454493 178454533 41 ATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCACCTG ATGTGGCCGTGTTCTTCAGCAAGGACGAGTGGTTGCACCTG Direct Loss 0.965883562094254 0 0.8829112 0 prediction 0.931767124188508 Functional Loss - ZNF879 ENSG00000234284 CDS Human protein_coding chr5:178454513 chr5:178454513 nonsynonymous SNV 0.963 0 21 hm5C_associated_SNPs_47902 0 0 0 0 2 exosome 0.500151358069541 0 0.7658224 0.000302716139082282 hm5C_site_3222 DeepMRMD:0.7658224;iRNA_m5C:0.000302716139082282 3223 chr17 42266703 42266703 1 + C T UCEC 42266703 + 42266683 42266723 41 CTGAAGAGGCGGGTGAAGGTCGGGGAGACTCCACTGGGGAG CTGAAGAGGCGGGTGAAGGTTGGGGAGACTCCACTGGGGAG Direct Loss 0.965873607916141 0 0.9378562 0 prediction 0.931747215832282 Functional Loss - TMUB2 ENSG00000168591 CDS Human protein_coding chr17:42266703 chr17:42266703 nonsynonymous SNV 0.971 1 21 hm5C_associated_SNPs_47903 0 0 1 0 1 Endoplasmic reticulum 0.500231643921102 0 0.8757124 0.000463287842203952 hm5C_site_3223 DeepMRMD:0.8757124;iRNA_m5C:0.000463287842203952 3224 chr11 120099657 120099657 1 + C T UCEC 120099657 + 120099637 120099677 41 GCTGCAGGCAGGTGGGGGACCACGGGAAGCCCTGCGTCTGC GCTGCAGGCAGGTGGGGGACTACGGGAAGCCCTGCGTCTGC Direct Loss 0.965867176907241 0 0.9068586 0 prediction 0.931734353814482 Functional Loss - OAF ENSG00000184232 CDS Human protein_coding chr11:120099657 chr11:120099657 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47904 0 0 0 0 1 Endoplasmic reticulum 0.500231643921083 0 0.8137172 0.000463287842166205 hm5C_site_3224 DeepMRMD:0.8137172;iRNA_m5C:0.000463287842166205 3225 chr11 65338937 65338937 1 + C G UCEC 65338937 + 65338917 65338957 41 CTCAGAGCTCCCCCTGGGCTCTCGACCTGCGCCCCAGCCCC CTCAGAGCTCCCCCTGGGCTGTCGACCTGCGCCCCAGCCCC Direct Loss 0.96586614350897 0 0.20474201 0 prediction 0.931732287017939 Functional Loss - SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338937 chr11:65338937 nonsynonymous SNV 0.072 1 21 hm5C_associated_SNPs_47905 0 0 0 0 1 Cytosol 0.500231643921104 0 0 0.000463287842207727 hm5C_site_3225 DeepMRMD:0;iRNA_m5C:0.000463287842207727 3226 chr15 63414143 63414143 1 + C A rs34297800 63414143 + 63414123 63414163 41 TGGCCTCAAGCTGCGGACGACGCGGGGTCCATCAGCGCGCC TGGCCTCAAGCTGCGGACGAAGCGGGGTCCATCAGCGCGCC Direct Loss 0.965825980427377 0 0.9161247 0 prediction 0.931651960854754 Functional Loss - LACTB ENSG00000103642 CDS Human protein_coding chr15:63414143 chr15:63414143 nonsynonymous SNV 0.027 3 21 hm5C_associated_SNPs_47906 0 0 0 0 0 Endoplasmic reticulum 0.500231658863342 0 0.8322494 0.000463317726683954 hm5C_site_3226 DeepMRMD:0.8322494;iRNA_m5C:0.000463317726683954 3227 chrX 152915772 152915772 1 + C T rs570349306 152915772 + 152915752 152915792 41 CCCACCTAGGGCCCCGTGGCCGGCAGGCCGGCCCCTGCCCC CCCACCTAGGGCCCCGTGGCTGGCAGGCCGGCCCCTGCCCC Direct Loss 0.965812029498178 0 0.90377617 0 prediction 0.931624058996356 Functional Loss - DUSP9 ENSG00000130829 UTR3 Human protein_coding chrX:152915772 chrX:152915772 . . 0 21 hm5C_associated_SNPs_47907 0 0 1 0 0 cytosol 0.500231643921092 0 0.80755234 0.000463287842184856 hm5C_site_3227 DeepMRMD:0.80755234;iRNA_m5C:0.000463287842184856 3228 chr2 27372094 27372094 1 + C T UCEC 27372094 + 27372074 27372114 41 CGGTTGCTGCCAGGCGCTGACAGGAAGAGGAGCCGCCTCAG CGGTTGCTGCCAGGCGCTGATAGGAAGAGGAGCCGCCTCAG Direct Loss 0.965811921388141 0 0.89278483 0 prediction 0.931623842776283 Functional Loss - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27372094 chr2:27372094 synonymous SNV . 0 21 hm5C_associated_SNPs_47908 0 0 0 0 0 exosome 0.500231728612183 0 0.78556966 0.000463457224366914 hm5C_site_3228 DeepMRMD:0.78556966;iRNA_m5C:0.000463457224366914 3229 chr9 91616635 91616635 1 + C T BRCA 91616635 + 91616615 91616655 41 CGCTGGGCGCCCTGCCCATTCTGGGCTGGAACTGCCTGCAC CGCTGGGCGCCCTGCCCATTTTGGGCTGGAACTGCCTGCAC Direct Loss 0.965805967095842 0 0.77873516 0 prediction 0.931611934191683 Functional Loss - S1PR3 ENSG00000213694 CDS Human protein_coding chr9:91616635 chr9:91616635 synonymous SNV . 0 21 hm5C_associated_SNPs_47909 0 0 1 0 0 cytosol 0.500231643921092 0 0.55747032 0.000463287842184856 hm5C_site_3229 DeepMRMD:0.55747032;iRNA_m5C:0.000463287842184856 3230 chr21 33785228 33785228 1 + C A rs146014823 33785228 + 33785208 33785248 41 TGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGCCGCCGGGG TGCAGCATCCCGGCCTCCGCAGGCAGGTAGAGCCGCCGGGG Direct Loss 0.965796024058037 0 0.62745905 0 prediction 0.931592048116073 Functional Loss - EVA1C ENSG00000166979 CDS Human protein_coding chr21:33785228 chr21:33785228 synonymous SNV . 0 21 hm5C_associated_SNPs_47910 0 0 0 0 1 Ribosome 0.50023164392109 0 0.2549181 0.000463287842180637 hm5C_site_3230 DeepMRMD:0.2549181;iRNA_m5C:0.000463287842180637 3231 chr7 154863098 154863098 1 + G A COAD 154863098 - 154863078 154863118 41 GCGGAGAGTGCCCAGGTGAGCGCGATCATGACGTTGGAGAC GCGGAGAGTGCCCAGGTGAGTGCGATCATGACGTTGGAGAC Direct Loss 0.965788571117202 0 0.27585524 0 prediction 0.931577142234404 Functional Loss - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154863098 chr7:154863098 synonymous SNV . 0 21 hm5C_associated_SNPs_47911 0 0 0 0 0 exosome 0.500231643921256 0 0 0.00046328784251215 hm5C_site_3231 DeepMRMD:0;iRNA_m5C:0.00046328784251215 3232 chr10 134016186 134016186 1 + C T CESC 134016186 + 134016166 134016206 41 TCTTCGAGGGAGTGGAGTGCCGGGGAGCGCCTGCCGTGGTC TCTTCGAGGGAGTGGAGTGCTGGGGAGCGCCTGCCGTGGTC Direct Loss 0.965764918091182 0 0.8753948 0 prediction 0.931529836182364 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016186 chr10:134016186 nonsynonymous SNV 0.934 3 21 hm5C_associated_SNPs_47912 0 0 1 0 1 Endoplasmic reticulum 0.500231643808234 0 0.7507896 0.000463287616468522 hm5C_site_3232 DeepMRMD:0.7507896;iRNA_m5C:0.000463287616468522 3233 chr7 143748183 143748183 1 + C A LUAD 143748183 + 143748163 143748203 41 GGCCATCTTGAGGATCCAGTCTGGGGAGGGCCGCAGAAAGG GGCCATCTTGAGGATCCAGTATGGGGAGGGCCGCAGAAAGG Direct Loss 0.965763120394021 0 0.52279323 0 prediction 0.931526240788043 Functional Loss - OR2A5 ENSG00000221836 CDS Human protein_coding chr7:143748183 chr7:143748183 nonsynonymous SNV 0.890 3 21 hm5C_associated_SNPs_47913 0 0 0 0 0 unknown 0.500231643921093 0 0.04558646 0.000463287842185078 hm5C_site_3233 DeepMRMD:0.04558646;iRNA_m5C:0.000463287842185078 3234 chr11 46723130 46723130 1 + C T UCEC 46723130 + 46723110 46723150 41 CGCTTGGGGGTCTGGTGTGTCGGGGACCCCCTGCAGCCCGG CGCTTGGGGGTCTGGTGTGTTGGGGACCCCCTGCAGCCCGG Direct Loss 0.965747402649483 0 0.93315995 0 prediction 0.931494805298966 Functional Loss - ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46723130 chr11:46723130 synonymous SNV . 0 21 hm5C_associated_SNPs_47914 0 0 0 0 1 cytosol 0.500231643921092 0 0.8663199 0.000463287842183746 hm5C_site_3234 DeepMRMD:0.8663199;iRNA_m5C:0.000463287842183746 3235 chr1 2938819 2938819 1 + C T UCEC 2938819 + 2938799 2938839 41 CGTGGCGGGCAGGGACATCACGGAGCTCCTCATGCAGCTGC CGTGGCGGGCAGGGACATCATGGAGCTCCTCATGCAGCTGC Direct Loss 0.965746171106111 0 0.93562543 0 prediction 0.931492342212221 Functional Loss - ACTRT2 ENSG00000169717 CDS Human protein_coding chr1:2938819 chr1:2938819 nonsynonymous SNV 0.874 4 21 hm5C_associated_SNPs_47915 0 0 0 0 0 unknown 0.500231643920609 0 0.87125086 0.000463287841217408 hm5C_site_3235 DeepMRMD:0.87125086;iRNA_m5C:0.000463287841217408 3236 chr19 50910642 50910642 1 + C T UCEC 50910642 + 50910622 50910662 41 AGAGGGCGGCGAGGACTACACGGGAGCCACTGTCATCGAGC AGAGGGCGGCGAGGACTACATGGGAGCCACTGTCATCGAGC Direct Loss 0.965743586095847 0 0.87045753 0 prediction 0.931487172191695 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50910642 chr19:50910642 nonsynonymous SNV 0.995 2 21 hm5C_associated_SNPs_47916 1 0 0 0 1 Nucleus 0.500231643921092 0 0.74091506 0.000463287842184856 hm5C_site_3236 DeepMRMD:0.74091506;iRNA_m5C:0.000463287842184856 Colorectal cancer 10 Colorectal cancer 10 3237 chr22 50928372 50928372 1 + C G rs2232888 50928372 + 50928352 50928392 41 CCTGGGCAAACAGCCGCCATCAGGGTTCACCTCGGTGGGGG CCTGGGCAAACAGCCGCCATGAGGGTTCACCTCGGTGGGGG Direct Loss 0.965735678112137 0 0.95503175 0 prediction 0.931471356224273 Functional Loss - MIOX ENSG00000100253 UTR3 Human protein_coding chr22:50928372 chr22:50928372 . . 0 21 hm5C_associated_SNPs_47917 0 0 0 0 0 exosome 0.500231643919278 0 0.9100635 0.000463287838555093 hm5C_site_3237 DeepMRMD:0.9100635;iRNA_m5C:0.000463287838555093 3238 chr6 52268150 52268150 1 + C A STAD 52268150 + 52268130 52268170 41 CGGATGTGCCCCAGCTCTTCCGGGAGCCTTACATCCGCACC CGGATGTGCCCCAGCTCTTCAGGGAGCCTTACATCCGCACC Direct Loss 0.965730434456658 0 0.93154156 0 prediction 0.931460868913316 Functional Loss - PAQR8 ENSG00000170915 CDS Human protein_coding chr6:52268150 chr6:52268150 synonymous SNV . 0 21 hm5C_associated_SNPs_47918 0 0 1 0 0 Ribosome 0.500231643921081 0 0.86308312 0.000463287842162874 hm5C_site_3238 DeepMRMD:0.86308312;iRNA_m5C:0.000463287842162874 3239 chr14 23311716 23311716 1 + C T GBM 23311716 + 23311696 23311736 41 GTGCCACACCACTGCGCTTCCGCGAGGTGCCCTATGCCTAC GTGCCACACCACTGCGCTTCTGCGAGGTGCCCTATGCCTAC Direct Loss 0.965725075828092 0 0.58818024 0 prediction 0.931450151656184 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311716 chr14:23311716 nonsynonymous SNV 0.987 4 21 hm5C_associated_SNPs_47919 0 0 0 0 1 cytosol 0.500231644066273 0 0.17636048 0.000463288132546813 hm5C_site_3239 DeepMRMD:0.17636048;iRNA_m5C:0.000463288132546813 3240 chr4 40245451 40245451 1 + C A LAML 40245451 + 40245431 40245471 41 ATGTCAGAGCCAAGGGCTACCTGGAGTGCTCAGCCCTTAGC ATGTCAGAGCCAAGGGCTACATGGAGTGCTCAGCCCTTAGC Direct Loss 0.965696301510628 0 0.8866416 0 prediction 0.931392603021256 Functional Loss - RHOH ENSG00000168421 CDS Human protein_coding chr4:40245451 chr4:40245451 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_47920 0 0 0 0 0 Cytosol 0.500231637997053 0 0.7732832 0.000463275994106338 hm5C_site_3240 DeepMRMD:0.7732832;iRNA_m5C:0.000463275994106338 3241 chr7 73279446 73279446 1 + C A COAD 73279446 + 73279426 73279466 41 ACTGGCAGGCCCACCTACCCCTGGGAGCTGCAGCCTGCCCC ACTGGCAGGCCCACCTACCCATGGGAGCTGCAGCCTGCCCC Direct Loss 0.965695530231412 0 0.21392849 0 prediction 0.931391060462824 Functional Loss - TMEM270 ENSG00000175877 CDS Human protein_coding chr7:73279446 chr7:73279446 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47921 0 0 0 0 0 unknown 0.500231679744599 0 0 0.000463359489198067 hm5C_site_3241 DeepMRMD:0;iRNA_m5C:0.000463359489198067 3242 chr19 57133984 57133984 1 + C T LUSC 57133984 + 57133964 57134004 41 CCGTACAGGTGCGGCCAGTGCGGGAAGTCCTTCATCAAGAA CCGTACAGGTGCGGCCAGTGTGGGAAGTCCTTCATCAAGAA Direct Loss 0.96568779701305 0 0.87317294 0 prediction 0.931375594026099 Functional Loss - ZNF71 ENSG00000197951 CDS Human protein_coding chr19:57133984 chr19:57133984 synonymous SNV . 0 21 hm5C_associated_SNPs_47922 0 0 0 0 0 exosome 0.500231644074593 0 0.74634588 0.000463288149186614 hm5C_site_3242 DeepMRMD:0.74634588;iRNA_m5C:0.000463288149186614 3243 chr4 56225636 56225636 1 + C T UCEC 56225636 + 56225616 56225656 41 CATGGTTTGCTCAGAATTCTCGGGGCGGCACAGTTCCAGGG CATGGTTTGCTCAGAATTCTTGGGGCGGCACAGTTCCAGGG Direct Loss 0.965685001985404 0 0.95766675 0 prediction 0.931370003970808 Functional Loss - SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56225636 chr4:56225636 synonymous SNV . 0 21 hm5C_associated_SNPs_47923 0 0 1 0 0 Ribosome 0.500231643920745 0 0.9153335 0.000463287841490523 hm5C_site_3243 DeepMRMD:0.9153335;iRNA_m5C:0.000463287841490523 3244 chr1 117618146 117618146 1 + C G ACC 117618146 + 117618126 117618166 41 GCCTGCCTCAGGGGCATTTCCAAGAGCGGCCGGAGACCCAC GCCTGCCTCAGGGGCATTTCGAAGAGCGGCCGGAGACCCAC Direct Loss 0.965683421427975 0 0.9349298 0 prediction 0.93136684285595 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117618146 chr1:117618146 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47924 0 0 1 0 0 Nucleus 0.500231643921104 0 0.8698596 0.000463287842207505 hm5C_site_3244 DeepMRMD:0.8698596;iRNA_m5C:0.000463287842207505 3245 chr19 49378882 49378882 1 + C T UCEC 49378882 + 49378862 49378902 41 TGCCCGCAGGTGCGCTTCTCCGAGAAGGTCACTGTCCATTT TGCCCGCAGGTGCGCTTCTCTGAGAAGGTCACTGTCCATTT Direct Loss 0.965645598564806 0 0.84391236 0 prediction 0.931291197129613 Functional Loss - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49378882 chr19:49378882 synonymous SNV . 0 21 hm5C_associated_SNPs_47925 0 0 1 0 1 Cytosol 0.500231643920477 0 0.68782472 0.000463287840953397 hm5C_site_3245 DeepMRMD:0.68782472;iRNA_m5C:0.000463287840953397 3246 chr12 69652480 69652480 1 + C A GBM 69652480 + 69652460 69652500 41 CTCTAGCTGGGCCTCCTAATCGAGGAGATCGCCCTCCACCA CTCTAGCTGGGCCTCCTAATAGAGGAGATCGCCCTCCACCA Direct Loss 0.965636610738544 0 0.93917674 0 prediction 0.931273221477088 Functional Loss - CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69652480 chr12:69652480 synonymous SNV . 0 21 hm5C_associated_SNPs_47926 0 0 1 0 0 Nucleus 0.500231643921092 0 0.87835348 0.000463287842184856 hm5C_site_3246 DeepMRMD:0.87835348;iRNA_m5C:0.000463287842184856 3247 chr2 168726189 168726189 1 + C A rs144099662 168726189 + 168726169 168726209 41 TCATTAATGGAGGACCGATTCGGGATGTCCGCAGTAAGTGG TCATTAATGGAGGACCGATTAGGGATGTCCGCAGTAAGTGG Direct Loss 0.965621875161895 0 0.9212537 0 prediction 0.931243750323789 Functional Loss - B3GALT1 ENSG00000172318 CDS Human protein_coding chr2:168726189 chr2:168726189 synonymous SNV . 0 21 hm5C_associated_SNPs_47927 0 0 0 0 0 chromatin 0.500231643921093 0 0.8425074 0.000463287842185078 hm5C_site_3247 DeepMRMD:0.8425074;iRNA_m5C:0.000463287842185078 3248 chr1 147381031 147381031 1 + C G LUAD 147381031 + 147381011 147381051 41 GGGACTTGTCCCGGGGCTACCAAGAGACACTGCCTTCCTAC GGGACTTGTCCCGGGGCTACGAAGAGACACTGCCTTCCTAC Direct Loss 0.965592035295291 0 0.93522835 0 prediction 0.931184070590581 Functional Loss - GJA8 ENSG00000121634 CDS Human protein_coding chr1:147381031 chr1:147381031 nonsynonymous SNV 0.977 0 21 hm5C_associated_SNPs_47928 0 0 0 0 0 unknown 0.500231643921107 0 0.8704567 0.0004632878422135 hm5C_site_3248 DeepMRMD:0.8704567;iRNA_m5C:0.0004632878422135 3249 chr1 153233506 153233506 1 + C T STAD 153233506 + 153233486 153233526 41 GGCGGCGGTGGCGGTGGCGGCGGCAGCGGCGGTGGTGGCTG GGCGGCGGTGGCGGTGGCGGTGGCAGCGGCGGTGGTGGCTG Direct Loss 0.965590558006568 0 0.8920895 0 prediction 0.931181116013136 Functional Loss - LOR ENSG00000203782 CDS Human protein_coding chr1:153233506 chr1:153233506 synonymous SNV . 0 21 hm5C_associated_SNPs_47929 0 0 0 0 0 exosome 0.500231643921092 0 0.784179 0.000463287842184856 hm5C_site_3249 DeepMRMD:0.784179;iRNA_m5C:0.000463287842184856 3250 chr1 236908011 236908011 1 + C T COAD 236908011 + 236907991 236908031 41 CTGCGGAAGCACGAGGCGTTCGAGAGCGACCTGGCAGCGCA CTGCGGAAGCACGAGGCGTTTGAGAGCGACCTGGCAGCGCA Direct Loss 0.965587805204145 0 0.8985809 0 prediction 0.93117561040829 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236908011 chr1:236908011 synonymous SNV . 0 21 hm5C_associated_SNPs_47930 4 0 0 0 2 chromatin 0.500231641597955 0 0.7971618 0.000463283195910158 hm5C_site_3250 DeepMRMD:0.7971618;iRNA_m5C:0.000463283195910158 not specified not specified 3251 chr16 56711062 56711062 1 + C A rs117028388 56711062 + 56711042 56711082 41 TCCCTGGGAATCGCAGGGAGCGGGGGTGCTGGGCTGAGTCA TCCCTGGGAATCGCAGGGAGAGGGGGTGCTGGGCTGAGTCA Direct Loss 0.965586201103154 0 0.93287885 0 prediction 0.931172402206309 Functional Loss - MT1IP ENSG00000205358;ENSG00000187193 intergenic Human other chr16:56711062 chr16:56711062 . . 0 21 hm5C_associated_SNPs_47931 0 0 0 0 1 unknown 0.50023164400895 0 0.8657577 0.000463288017899188 hm5C_site_3251 DeepMRMD:0.8657577;iRNA_m5C:0.000463288017899188 3252 chr7 142563789 142563789 1 + C T SKCM 142563789 + 142563769 142563809 41 TGCTACACTGGCGCCTGCCTCGGGAGCTGGGGGGTCGAGGG TGCTACACTGGCGCCTGCCTTGGGAGCTGGGGGGTCGAGGG Direct Loss 0.965569120613678 0 0.95104957 0 prediction 0.931138241227356 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142563789 chr7:142563789 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_47932 0 0 0 0 1 Endoplasmic reticulum 0.500231643641972 0 0.90209914 0.000463287283943847 hm5C_site_3252 DeepMRMD:0.90209914;iRNA_m5C:0.000463287283943847 3253 chr17 7479901 7479901 1 + C A rs550885428 7479901 + 7479881 7479921 41 GCCTCCTGTCACGCCTGTATCGGGGGCACCAACGTGCGTGC GCCTCCTGTCACGCCTGTATAGGGGGCACCAACGTGCGTGC Direct Loss 0.965519518154885 0 0.9779754 0 prediction 0.931039036309771 Functional Loss - EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479901 chr17:7479901 synonymous SNV . 0 21 hm5C_associated_SNPs_47933 0 0 1 0 1 Cytosol 0.500231650270758 0 0.9559508 0.000463300541515332 hm5C_site_3253 DeepMRMD:0.9559508;iRNA_m5C:0.000463300541515332 3254 chr8 141521631 141521631 1 + C A HNSC 141521631 + 141521611 141521651 41 GTCGTGGGTAAAGACAAGGGCGGGGAGCAGCGGCTCATCTC GTCGTGGGTAAAGACAAGGGAGGGGAGCAGCGGCTCATCTC Direct Loss 0.965518859538723 0 0.89414346 0 prediction 0.931037719077446 Functional Loss - CHRAC1 ENSG00000104472 CDS Human protein_coding chr8:141521631 chr8:141521631 synonymous SNV . 0 21 hm5C_associated_SNPs_47934 0 0 1 0 0 Cytosol 0.500231643928798 0 0.78828692 0.000463287857596972 hm5C_site_3254 DeepMRMD:0.78828692;iRNA_m5C:0.000463287857596972 3255 chr4 96761674 96761674 1 + C A LUAD 96761674 + 96761654 96761694 41 CTCATGGTGTGTGCTATACTCGGGGACTTTCTGTCCGATCC CTCATGGTGTGTGCTATACTAGGGGACTTTCTGTCCGATCC Direct Loss 0.965511826973162 0 0.94848335 0 prediction 0.931023653946324 Functional Loss - PDHA2 ENSG00000163114 CDS Human protein_coding chr4:96761674 chr4:96761674 synonymous SNV . 0 21 hm5C_associated_SNPs_47935 0 0 0 0 0 unknown 0.500231643933391 0 0.8969667 0.000463287866782069 hm5C_site_3255 DeepMRMD:0.8969667;iRNA_m5C:0.000463287866782069 3256 chr7 44796724 44796724 1 + C T SKCM 44796724 + 44796704 44796744 41 GTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTTCACCA GTACAGCCGCGGGGGCTACCTTGGGGCCCCCGGCTTCACCA Direct Loss 0.965491663775921 0 0.93932307 0 prediction 0.930983327551843 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796724 chr7:44796724 nonsynonymous SNV 0.942 4 21 hm5C_associated_SNPs_47936 0 0 1 0 2 Cytosol 0.500231643921092 0 0.87864614 0.000463287842184856 hm5C_site_3256 DeepMRMD:0.87864614;iRNA_m5C:0.000463287842184856 3257 chr1 156594421 156594421 1 + C T STAD 156594421 + 156594401 156594441 41 GAGGGTCTGGACTGGTGTAACGCGGGCTGGCTGCTCGAGGG GAGGGTCTGGACTGGTGTAATGCGGGCTGGCTGCTCGAGGG Direct Loss 0.965472845137854 0 0.9193157 0 prediction 0.930945690275708 Functional Loss - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156594421 chr1:156594421 synonymous SNV . 0 21 hm5C_associated_SNPs_47937 0 0 1 0 1 exosome 0.500231643381106 0 0.8386314 0.000463286762211856 hm5C_site_3257 DeepMRMD:0.8386314;iRNA_m5C:0.000463286762211856 3258 chr22 39883741 39883741 1 + C T COAD 39883741 + 39883721 39883761 41 GATGCTGGAGAGGCCGCCCCCGGGACGGCCGGAGGAGAAGC GATGCTGGAGAGGCCGCCCCTGGGACGGCCGGAGGAGAAGC Direct Loss 0.965463894652084 0 0.9034638 0 prediction 0.930927789304169 Functional Loss - MGAT3 ENSG00000128268 CDS Human protein_coding chr22:39883741 chr22:39883741 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_47938 0 0 0 0 0 Endoplasmic reticulum 0.500231643926497 0 0.8069276 0.000463287852993544 hm5C_site_3258 DeepMRMD:0.8069276;iRNA_m5C:0.000463287852993544 3259 chr12 98909870 98909870 1 + G A rs59027673 98909870 - 98909850 98909890 41 GCGGCCCCAGAGCCGAGGACCGGGGTGGGCTCGCGCTCTTC GCGGCCCCAGAGCCGAGGACTGGGGTGGGCTCGCGCTCTTC Direct Loss 0.965462399393607 0 0.9417124 0 prediction 0.930924798787214 Functional Loss - TMPO ENSG00000120802 CDS Human protein_coding chr12:98909870 chr12:98909870 synonymous SNV . 0 21 hm5C_associated_SNPs_47939 2 0 1 0 0 Ribosome 0.500231643792536 0 0.8834248 0.000463287585072525 hm5C_site_3259 DeepMRMD:0.8834248;iRNA_m5C:0.000463287585072525 not specified not specified 3260 chr1 6694574 6694574 1 + G A rs6804 6694574 - 6694554 6694594 41 GGTGGCTGAGACAGCTGGCGCGGGGGGCCCCAAGCTGCGCC GGTGGCTGAGACAGCTGGCGTGGGGGGCCCCAAGCTGCGCC Direct Loss 0.965452357523543 0 0.93604076 0 prediction 0.930904715047085 Functional Loss - DNAJC11;THAP3 ENSG00000007923;ENSG00000041988 UTR3 Human other chr1:6694574 chr1:6694574 . . 0 21 hm5C_associated_SNPs_47940 0 0 1 0 0 unknown 0.500231643921092 0 0.87208152 0.000463287842184856 hm5C_site_3260 DeepMRMD:0.87208152;iRNA_m5C:0.000463287842184856 3261 chr19 17654224 17654224 1 + C T STAD 17654224 + 17654204 17654244 41 GCCCAGAGGCTGGAGAGAGTCAGGGGGCGCGTGCTGAAGGT GCCCAGAGGCTGGAGAGAGTTAGGGGGCGCGTGCTGAAGGT Direct Loss 0.965436804989592 0 0.91356885 0 prediction 0.930873609979184 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17654224 chr19:17654224 synonymous SNV . 0 21 hm5C_associated_SNPs_47941 0 0 0 0 2 exosome 0.500231643921359 0 0.8271377 0.000463287842718874 hm5C_site_3261 DeepMRMD:0.8271377;iRNA_m5C:0.000463287842718874 3262 chr1 206224525 206224525 1 + C T COAD 206224525 + 206224505 206224545 41 CCACAACACCCTGGCTGGGCCGGGATGAGGAGCTGGCCAAG CCACAACACCCTGGCTGGGCTGGGATGAGGAGCTGGCCAAG Direct Loss 0.965427692187818 0 0.8783275 0 prediction 0.930855384375636 Functional Loss - AVPR1B ENSG00000198049 CDS Human protein_coding chr1:206224525 chr1:206224525 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_47942 0 0 0 0 0 unknown 0.500231643921093 0 0.756655 0.000463287842186855 hm5C_site_3262 DeepMRMD:0.756655;iRNA_m5C:0.000463287842186855 3263 chr15 23261918 23261918 1 + C T SKCM 23261918 + 23261898 23261938 41 GGGGACAAGAAGAGAGGATTCGGGAGCAGGAAGAGAGGCTT GGGGACAAGAAGAGAGGATTTGGGAGCAGGAAGAGAGGCTT Direct Loss 0.965426262988715 0 0.8897903 0 prediction 0.930852525977431 Functional Loss - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261918 chr15:23261918 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_47943 0 0 0 0 0 unknown 0.500231643921092 0 0.7795806 0.000463287842184856 hm5C_site_3263 DeepMRMD:0.7795806;iRNA_m5C:0.000463287842184856 3264 chr7 53103863 53103863 1 + C T BLCA 53103863 + 53103843 53103883 41 CCGCAGGCCGCCCCGCCGCCCAGGAGCTCCTGGACCCCTGC CCGCAGGCCGCCCCGCCGCCTAGGAGCTCCTGGACCCCTGC Direct Loss 0.96542428514201 0 0.92380965 0 prediction 0.930848570284021 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103863 chr7:53103863 stopgain 0.000 0 21 hm5C_associated_SNPs_47944 0 0 0 0 0 unknown 0.500231643921093 0 0.8476193 0.0004632878421853 hm5C_site_3264 DeepMRMD:0.8476193;iRNA_m5C:0.0004632878421853 3265 chr3 3168667 3168667 1 + C T rs541567431 3168667 + 3168647 3168687 41 GGTGGCGGCTGCGGCAACAGCGGGGCCGGTAAGCGGGCGCG GGTGGCGGCTGCGGCAACAGTGGGGCCGGTAAGCGGGCGCG Direct Loss 0.965414090733148 0 0.9103639 0 prediction 0.930828181466296 Functional Loss - TRNT1 ENSG00000072756 UTR5 Human protein_coding chr3:3168667 chr3:3168667 . . 0 21 hm5C_associated_SNPs_47945 0 0 1 0 1 Cytosol 0.500231643921093 0 0.8207278 0.000463287842185078 hm5C_site_3265 DeepMRMD:0.8207278;iRNA_m5C:0.000463287842185078 3266 chr17 16593767 16593767 1 + C T rs371265519 16593767 + 16593747 16593787 41 GGCTGAGGGGTCTCCGAAGCCGGCAGTCTACGCCACGAGGA GGCTGAGGGGTCTCCGAAGCTGGCAGTCTACGCCACGAGGA Direct Loss 0.965410955017796 0 0.9147763 0 prediction 0.930821910035591 Functional Loss - CCDC144A ENSG00000170160;ENSG00000266302 CDS Human other chr17:16593767 chr17:16593767 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47946 0 0 0 0 0 exosome 0.500231643921239 0 0.8295526 0.000463287842477955 hm5C_site_3266 DeepMRMD:0.8295526;iRNA_m5C:0.000463287842477955 3267 chr3 5229442 5229442 1 + C A COAD 5229442 + 5229422 5229462 41 GCGCGGGGTGCGGTGGTCGGCGGGGAGGCCCCCGCGCTTTA GCGCGGGGTGCGGTGGTCGGAGGGGAGGCCCCCGCGCTTTA Direct Loss 0.96539736601891 0 0.91229284 0 prediction 0.930794732037819 Functional Loss - EDEM1 ENSG00000268509 CDS Human antisense chr3:5229442 chr3:5229442 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_47947 0 0 1 0 0 Ribosome 0.500231643921092 0 0.82458568 0.000463287842184856 hm5C_site_3267 DeepMRMD:0.82458568;iRNA_m5C:0.000463287842184856 3268 chr7 92158209 92158209 1 + C T BLCA 92158209 + 92158189 92158229 41 GCGACACACGGGCCAAATATCGAGAGGGACGACGGCCTCGT GCGACACACGGGCCAAATATTGAGAGGGACGACGGCCTCGT Direct Loss 0.965393103869212 0 0.9360253 0 prediction 0.930786207738425 Functional Loss - RBM48 ENSG00000127993 CDS Human protein_coding chr7:92158209 chr7:92158209 stopgain 0.913 1 21 hm5C_associated_SNPs_47948 0 0 1 0 1 Nucleus 0.500231992131033 0 0.8720506 0.000463984262065287 hm5C_site_3268 DeepMRMD:0.8720506;iRNA_m5C:0.000463984262065287 3269 chr4 41259498 41259498 1 + C T rs112409507 41259498 + 41259478 41259518 41 CCCGGGTGGGGGTGGCAGGGCGGGACTGGGGCTCCTCCCAG CCCGGGTGGGGGTGGCAGGGTGGGACTGGGGCTCCTCCCAG Direct Loss 0.965369902248389 0 0.92377174 0 prediction 0.930739804496779 Functional Loss - UCHL1 ENSG00000154277 intronic Human protein_coding chr4:41259498 chr4:41259498 . . 0 21 hm5C_associated_SNPs_47949 0 0 0 0 0 Ribosome 0.50023164392096 0 0.84754348 0.000463287841919513 hm5C_site_3269 DeepMRMD:0.84754348;iRNA_m5C:0.000463287841919513 3270 chr11 123777516 123777516 1 + C A LUAD 123777516 + 123777496 123777536 41 TGCGATCGCTACGTGGCCATCTGCAGCCCACTGCTCTACAG TGCGATCGCTACGTGGCCATATGCAGCCCACTGCTCTACAG Direct Loss 0.965365899518218 0 0.3665743 0 prediction 0.930731799036435 Functional Loss - OR8D4 ENSG00000181518 CDS Human protein_coding chr11:123777516 chr11:123777516 synonymous SNV . 0 21 hm5C_associated_SNPs_47950 0 0 0 0 0 unknown 0.500231647888245 0 0 0.000463295776489403 hm5C_site_3270 DeepMRMD:0;iRNA_m5C:0.000463295776489403 3271 chr1 159799702 159799702 1 + C T STAD 159799702 + 159799682 159799722 41 GCCCAAGTGCTGAGCAAAGTCGGGGGCTCGGTGCTGCTGGT GCCCAAGTGCTGAGCAAAGTTGGGGGCTCGGTGCTGCTGGT Direct Loss 0.965337686586923 0 0.93824863 0 prediction 0.930675373173846 Functional Loss - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159799702 chr1:159799702 synonymous SNV . 0 21 hm5C_associated_SNPs_47951 0 0 0 0 1 exosome 0.500231643919317 0 0.87649726 0.000463287838633475 hm5C_site_3271 DeepMRMD:0.87649726;iRNA_m5C:0.000463287838633475 3272 chr4 40245475 40245475 1 + C T UCEC 40245475 + 40245455 40245495 41 AGTGCTCAGCCCTTAGCAATCGGGGAGTACAGCAGGTGTTT AGTGCTCAGCCCTTAGCAATTGGGGAGTACAGCAGGTGTTT Direct Loss 0.96533694087204 0 0.94422525 0 prediction 0.930673881744079 Functional Loss - RHOH ENSG00000168421 CDS Human protein_coding chr4:40245475 chr4:40245475 nonsynonymous SNV 0.967 4 21 hm5C_associated_SNPs_47952 0 0 0 0 0 Cytosol 0.500231643889281 0 0.8884505 0.00046328777856175 hm5C_site_3272 DeepMRMD:0.8884505;iRNA_m5C:0.00046328777856175 3273 chr9 990464 990464 1 + C T UCEC 990464 + 990444 990484 41 GTCCAGCCGATCCTCAGTCACGGGAGCAGAGCGAACTTCCG GTCCAGCCGATCCTCAGTCATGGGAGCAGAGCGAACTTCCG Direct Loss 0.965324942760159 0 0.9063015 0 prediction 0.930649885520319 Functional Loss - DMRT3 ENSG00000064218 CDS Human protein_coding chr9:990464 chr9:990464 nonsynonymous SNV 0.013 0 21 hm5C_associated_SNPs_47953 0 0 0 0 0 unknown 0.500231812445359 0 0.812603 0.000463624890718828 hm5C_site_3273 DeepMRMD:0.812603;iRNA_m5C:0.000463624890718828 3274 chr7 150069137 150069137 1 + C T UCEC 150069137 + 150069117 150069157 41 CCCCACCAGTGCCCCGAGTGCGGGAAGCGCTTTACCAATAA CCCCACCAGTGCCCCGAGTGTGGGAAGCGCTTTACCAATAA Direct Loss 0.965313593366052 0 0.904675 0 prediction 0.930627186732104 Functional Loss - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150069137 chr7:150069137 synonymous SNV . 0 21 hm5C_associated_SNPs_47954 0 0 1 0 0 Endoplasmic reticulum 0.500231654963471 0 0.80935 0.00046330992694199 hm5C_site_3274 DeepMRMD:0.80935;iRNA_m5C:0.00046330992694199 3275 chr12 52284397 52284397 1 + C T UCEC 52284397 + 52284377 52284417 41 TGACAGCAGTGGACCCTGTTCGGGGCAAGACGGCCCTGGAA TGACAGCAGTGGACCCTGTTTGGGGCAAGACGGCCCTGGAA Direct Loss 0.965300201188768 0 0.9435091 0 prediction 0.930600402377535 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52284397 chr12:52284397 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_47955 0 0 0 0 1 unknown 0.50023164254714 0 0.8870182 0.00046328509427962 hm5C_site_3275 DeepMRMD:0.8870182;iRNA_m5C:0.00046328509427962 3276 chr2 190539281 190539281 1 + C T rs535335664 190539281 + 190539261 190539301 41 GAGGAGCAGCCCAGCCACCCCAGGGCCCGGAGGACCAACCG GAGGAGCAGCCCAGCCACCCTAGGGCCCGGAGGACCAACCG Direct Loss 0.965295741843157 0 0.8382697 0 prediction 0.930591483686315 Functional Loss - ASNSD1;ANKAR ENSG00000151687 UTR5 Human protein_coding chr2:190539281 chr2:190539281 . . 0 21 hm5C_associated_SNPs_47956 0 0 0 0 0 unknown 0.500231643921092 0 0.6765394 0.000463287842184856 hm5C_site_3276 DeepMRMD:0.6765394;iRNA_m5C:0.000463287842184856 3277 chr3 186302231 186302231 1 + C T UCEC 186302231 + 186302211 186302251 41 TTTTCTAGGTACATATTTCCCGGGATAAGATCACCAGGCCA TTTTCTAGGTACATATTTCCTGGGATAAGATCACCAGGCCA Direct Loss 0.965292701640617 0 0.8826175 0 prediction 0.930585403281234 Functional Loss - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302231 chr3:186302231 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_47957 0 0 1 0 1 Ribosome 0.500231643921093 0 0.765235 0.000463287842186633 hm5C_site_3277 DeepMRMD:0.765235;iRNA_m5C:0.000463287842186633 3278 chr2 71206278 71206278 1 + C T COAD 71206278 + 71206258 71206298 41 AGTGCGCAGGCGACTGCCCTCGCCAGGCCGCGCCGCCCTGC AGTGCGCAGGCGACTGCCCTTGCCAGGCCGCGCCGCCCTGC Direct Loss 0.965292288183388 0 0.90618026 0 prediction 0.930584576366776 Functional Loss - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71206278 chr2:71206278 synonymous SNV . 0 21 hm5C_associated_SNPs_47958 0 0 0 0 1 exosome 0.500231441898083 0 0.81236052 0.000462883796165769 hm5C_site_3278 DeepMRMD:0.81236052;iRNA_m5C:0.000462883796165769 3279 chr19 54445413 54445413 1 + C T rs149102515 54445413 + 54445393 54445433 41 CCGACTACTCGGGCCAGTTCCTGCAGCCCGAGGCGTGGCGC CCGACTACTCGGGCCAGTTCTTGCAGCCCGAGGCGTGGCGC Direct Loss 0.965256472365934 0 0.58436495 0 prediction 0.930512944731869 Functional Loss - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54445413 chr19:54445413 synonymous SNV . 0 21 hm5C_associated_SNPs_47959 0 0 0 0 0 unknown 0.50023162867926 0 0.1687299 0.000463257358519265 hm5C_site_3279 DeepMRMD:0.1687299;iRNA_m5C:0.000463257358519265 3280 chr22 50632869 50632869 1 + C T rs4838813 50632869 + 50632849 50632889 41 ACCCAGTTGGTGGCTGAGGACGGGAGCAGGGTGTACGTGGT ACCCAGTTGGTGGCTGAGGATGGGAGCAGGGTGTACGTGGT Direct Loss 0.965256196996907 0 0.90731406 0 prediction 0.930512393993815 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50632869 chr22:50632869 synonymous SNV . 0 21 hm5C_associated_SNPs_47960 0 0 1 0 1 Ribosome 0.500231643921092 0 0.81462812 0.000463287842184856 hm5C_site_3280 DeepMRMD:0.81462812;iRNA_m5C:0.000463287842184856 3281 chr17 78395733 78395733 1 + C G rs549246635 78395733 + 78395713 78395753 41 TGGAGCTGGTGCAGCAGCTGCGGGAGAAGGAGCCGGGCCTC TGGAGCTGGTGCAGCAGCTGGGGGAGAAGGAGCCGGGCCTC Direct Loss 0.965255542051184 0 0.9195222 0 prediction 0.930511084102369 Functional Loss - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78395733 chr17:78395733 nonsynonymous SNV 0.569 1 21 hm5C_associated_SNPs_47961 0 0 0 0 0 Ribosome 0.500231643948801 0 0.8390444 0.000463287897601417 hm5C_site_3281 DeepMRMD:0.8390444;iRNA_m5C:0.000463287897601417 3282 chr1 17603340 17603340 1 + C T rs34177351 17603340 + 17603320 17603360 41 GAAAAGCAGAAGTGTGGCCACGGGAGGGCCCTCCTGTTCCA GAAAAGCAGAAGTGTGGCCATGGGAGGGCCCTCCTGTTCCA Direct Loss 0.965240242354117 0 0.90826195 0 prediction 0.930480484708234 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17603340 chr1:17603340 synonymous SNV . 0 21 hm5C_associated_SNPs_47962 0 0 0 0 2 unknown 0.500231643940973 0 0.8165239 0.000463287881946384 hm5C_site_3282 DeepMRMD:0.8165239;iRNA_m5C:0.000463287881946384 3283 chr11 47600859 47600859 1 + C T THYM 47600859 + 47600839 47600879 41 TTCTGTTGCTGCCGGTGAGGCGGGAGAGCGCCGGGGCCGAC TTCTGTTGCTGCCGGTGAGGTGGGAGAGCGCCGGGGCCGAC Direct Loss 0.965233818176743 0 0.91577643 0 prediction 0.930467636353487 Functional Loss - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600859 chr11:47600859 nonsynonymous SNV 0.824 1 21 hm5C_associated_SNPs_47963 0 0 1 0 2 Ribosome 0.500231699041457 0 0.83155286 0.000463398082913402 hm5C_site_3283 DeepMRMD:0.83155286;iRNA_m5C:0.000463398082913402 3284 chr12 125576036 125576036 1 + C G LUAD 125576036 + 125576016 125576056 41 GCGGCAAGCATTGGTGCCATCTGGAGCTCCACGTCCCCGGA GCGGCAAGCATTGGTGCCATGTGGAGCTCCACGTCCCCGGA Direct Loss 0.965221383209155 0 0.9018222 0 prediction 0.93044276641831 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125576036 chr12:125576036 nonsynonymous SNV 0.957 3 21 hm5C_associated_SNPs_47964 0 0 1 1 2 Ribosome 0.500231643921955 0 0.8036444 0.000463287843910143 hm5C_site_3284 DeepMRMD:0.8036444;iRNA_m5C:0.000463287843910143 3285 chr9 139880028 139880028 1 + C A rs369530757 139880028 + 139880008 139880048 41 GCCGCAGCAGCCTGGGGAACCGCGGGGCTGCGCGTCGGGAG GCCGCAGCAGCCTGGGGAACAGCGGGGCTGCGCGTCGGGAG Direct Loss 0.965217310369716 0 0.8919568 0 prediction 0.930434620739431 Functional Loss - LCNL1 ENSG00000214402 UTR3 Human protein_coding chr9:139880028 chr9:139880028 . . 0 21 hm5C_associated_SNPs_47965 0 0 0 0 0 exosome 0.500231643921183 0 0.7839136 0.000463287842365601 hm5C_site_3285 DeepMRMD:0.7839136;iRNA_m5C:0.000463287842365601 3286 chr2 181845428 181845428 1 + C G rs191441558 181845428 + 181845408 181845448 41 CCGCGTCCCCTCCGCCTCGCCGGGAGCTCGCGCCCTCGCCC CCGCGTCCCCTCCGCCTCGCGGGGAGCTCGCGCCCTCGCCC Direct Loss 0.965213912231209 0 0.92377114 0 prediction 0.930427824462418 Functional Loss - UBE2E3 ENSG00000170035 UTR5 Human protein_coding chr2:181845428 chr2:181845428 . . 0 21 hm5C_associated_SNPs_47966 0 0 1 0 0 Cytosol 0.500231643818695 0 0.84754228 0.000463287637390675 hm5C_site_3286 DeepMRMD:0.84754228;iRNA_m5C:0.000463287637390675 3287 chr19 41630672 41630672 1 + C A LUSC 41630672 + 41630652 41630692 41 GGTGGGACGCGCGCGGCTGCCGGCGCTGAAGGACCGCGCGG GGTGGGACGCGCGCGGCTGCAGGCGCTGAAGGACCGCGCGG Direct Loss 0.965208279642407 0 0.903034 0 prediction 0.930416559284813 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630672 chr19:41630672 nonsynonymous SNV 0.006 3 21 hm5C_associated_SNPs_47967 0 0 0 0 1 exosome 0.500231643904046 0 0.806068 0.000463287808092128 hm5C_site_3287 DeepMRMD:0.806068;iRNA_m5C:0.000463287808092128 3288 chr11 101954671 101954671 1 + C T rs191069862 101954671 + 101954651 101954691 41 GCAAGAGAATCACTTGAACCCGGGAAGTGAGGTTGCAGTGA GCAAGAGAATCACTTGAACCTGGGAAGTGAGGTTGCAGTGA Direct Loss 0.96517618187172 0 0.9071144 0 prediction 0.93035236374344 Functional Loss - C11orf70 ENSG00000137691 UTR3 Human protein_coding chr11:101954671 chr11:101954671 . . 0 21 hm5C_associated_SNPs_47968 0 0 0 0 0 exosome 0.500231643920951 0 0.8142288 0.000463287841902416 hm5C_site_3288 DeepMRMD:0.8142288;iRNA_m5C:0.000463287841902416 3289 chr19 49439407 49439407 1 + C T UCEC 49439407 + 49439387 49439427 41 GTGAACGCGGCGGAAGTTCGCGAGATGGTCGCGGAGGCCCG GTGAACGCGGCGGAAGTTCGTGAGATGGTCGCGGAGGCCCG Direct Loss 0.965159840400404 0 0.90458757 0 prediction 0.930319680800807 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49439407 chr19:49439407 synonymous SNV . 0 21 hm5C_associated_SNPs_47969 0 0 0 0 1 cytosol 0.500231664530876 0 0.80917514 0.000463329061751283 hm5C_site_3289 DeepMRMD:0.80917514;iRNA_m5C:0.000463329061751283 3290 chr3 183858428 183858428 1 + C T LUSC 183858428 + 183858408 183858448 41 GCCTGGGCCATGGCAGCATCCTAGAGGAAAATGTGCTCCTG GCCTGGGCCATGGCAGCATCTTAGAGGAAAATGTGCTCCTG Direct Loss 0.965146023566752 0 0.49987882 0 prediction 0.930292047133504 Functional Loss - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183858428 chr3:183858428 synonymous SNV . 0 21 hm5C_associated_SNPs_47970 0 0 1 0 1 Ribosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3290 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3291 chr6 168445589 168445589 1 + C T SKCM 168445589 + 168445569 168445609 41 ACGTTGCAGGGCCTGGGTTTCGGGATCCGAGCTCGGCAAGT ACGTTGCAGGGCCTGGGTTTTGGGATCCGAGCTCGGCAAGT Direct Loss 0.965137106615411 0 0.93796396 0 prediction 0.930274213230822 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168445589 chr6:168445589 synonymous SNV . 0 21 hm5C_associated_SNPs_47971 0 0 0 0 1 exosome 0.500231551121202 0 0.87592792 0.000463102242403313 hm5C_site_3291 DeepMRMD:0.87592792;iRNA_m5C:0.000463102242403313 3292 chr1 99470041 99470041 1 + C A LUSC 99470041 + 99470021 99470061 41 GTAGAGGAGCACGGGGGGCACGGCGCTGCTGTCCTCCGGGC GTAGAGGAGCACGGGGGGCAAGGCGCTGCTGTCCTCCGGGC Direct Loss 0.965098150732492 0 0.86720186 0 prediction 0.930196301464985 Functional Loss - PLPPR5 ENSG00000117598 CDS Human protein_coding chr1:99470041 chr1:99470041 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_47972 0 0 0 0 0 unknown 0.500231643921092 0 0.73440372 0.000463287842184856 hm5C_site_3292 DeepMRMD:0.73440372;iRNA_m5C:0.000463287842184856 3293 chr2 233899244 233899244 1 + C T LUSC 233899244 + 233899224 233899264 41 TGACCATGGGCGCACGTGGGCGCGAGGGCACTTTGTGGCCC TGACCATGGGCGCACGTGGGTGCGAGGGCACTTTGTGGCCC Direct Loss 0.965087808952313 0 0.53416055 0 prediction 0.930175617904626 Functional Loss - NEU2 ENSG00000115488 CDS Human protein_coding chr2:233899244 chr2:233899244 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_47973 0 0 0 0 0 exosome 0.500231643921108 0 0.0683210999999999 0.000463287842215498 hm5C_site_3293 DeepMRMD:0.0683210999999999;iRNA_m5C:0.000463287842215498 3294 chr7 29606289 29606289 1 + C T CESC 29606289 + 29606269 29606309 41 CCCGGAGGCGGGCAGGTCCCCGGAGGAGGCAGGCTTTCCTG CCCGGAGGCGGGCAGGTCCCTGGAGGAGGCAGGCTTTCCTG Direct Loss 0.965076479672577 0 0.9406128 0 prediction 0.930152959345155 Functional Loss - PRR15 ENSG00000176532 CDS Human protein_coding chr7:29606289 chr7:29606289 nonsynonymous SNV 0.195 0 21 hm5C_associated_SNPs_47974 0 0 0 0 0 Cytosol 0.500231643921092 0 0.8812256 0.00046328784218419 hm5C_site_3294 DeepMRMD:0.8812256;iRNA_m5C:0.00046328784218419 3295 chr15 74174054 74174054 1 + C T SKCM 74174054 + 74174034 74174074 41 ACTTCTCATGGCAGAGTTCCCAGGATGAGCGGCTCACGGTG ACTTCTCATGGCAGAGTTCCTAGGATGAGCGGCTCACGGTG Direct Loss 0.965054882169109 0 0.9410997 0 prediction 0.930109764338218 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74174054 chr15:74174054 stopgain 0.998 0 21 hm5C_associated_SNPs_47975 0 0 0 0 1 exosome 0.500231644017505 0 0.8821994 0.000463288035009501 hm5C_site_3295 DeepMRMD:0.8821994;iRNA_m5C:0.000463288035009501 3296 chr14 96730713 96730713 1 + C T CESC 96730713 + 96730693 96730733 41 TCCTGGCCTCCCTGCGAACGCGGGAGGAGGTCAGCAGGACA TCCTGGCCTCCCTGCGAACGTGGGAGGAGGTCAGCAGGACA Direct Loss 0.965049998925559 0 0.90921235 0 prediction 0.930099997851117 Functional Loss - BDKRB1 ENSG00000100739 CDS Human protein_coding chr14:96730713 chr14:96730713 nonsynonymous SNV 0.006 3 21 hm5C_associated_SNPs_47976 0 0 0 0 0 nucleus 0.500231643921092 0 0.8184247 0.000463287842184856 hm5C_site_3296 DeepMRMD:0.8184247;iRNA_m5C:0.000463287842184856 3297 chr1 219347257 219347257 1 + C T SKCM 219347257 + 219347237 219347277 41 CGGCTGCGTCGGGGTCGGTTCTGCAGCGCTGTATCGTGTCG CGGCTGCGTCGGGGTCGGTTTTGCAGCGCTGTATCGTGTCG Direct Loss 0.965043890439235 0 0.7265045 0 prediction 0.93008778087847 Functional Loss - LYPLAL1 ENSG00000143353 CDS Human protein_coding chr1:219347257 chr1:219347257 synonymous SNV . 0 21 hm5C_associated_SNPs_47977 0 0 1 0 1 Ribosome 0.50023164392167 0 0.453009 0.000463287843340821 hm5C_site_3297 DeepMRMD:0.453009;iRNA_m5C:0.000463287843340821 3298 chr10 76940219 76940219 1 + C T rs185048015 76940219 + 76940199 76940239 41 TGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGAAGAA TGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGAAGAA Direct Loss 0.965043720279419 0 0.92661196 0 prediction 0.930087440558837 Functional Loss - SAMD8 ENSG00000156671 UTR3 Human protein_coding chr10:76940219 chr10:76940219 . . 0 21 hm5C_associated_SNPs_47978 0 0 0 0 0 chromatin 0.500231643921092 0 0.85322392 0.000463287842184856 hm5C_site_3298 DeepMRMD:0.85322392;iRNA_m5C:0.000463287842184856 3299 chr11 60689590 60689590 1 + C T CESC 60689590 + 60689570 60689610 41 AGGTGGAGGAGCTGCGCTGGCGCCAGAGGCGAGCGGCCAAG AGGTGGAGGAGCTGCGCTGGTGCCAGAGGCGAGCGGCCAAG Direct Loss 0.965035451054698 0 0.5256658 0 prediction 0.930070902109396 Functional Loss - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60689590 chr11:60689590 nonsynonymous SNV 0.996 3 21 hm5C_associated_SNPs_47979 0 0 1 0 0 Ribosome 0.500231644099339 0 0.0513315999999999 0.000463288198677025 hm5C_site_3299 DeepMRMD:0.0513315999999999;iRNA_m5C:0.000463288198677025 3300 chr22 25603066 25603066 1 + C T ESCA 25603066 + 25603046 25603086 41 GGCGCCAGTACGTGTTTGAGCGGGGCGAGTACCGCCACTGG GGCGCCAGTACGTGTTTGAGTGGGGCGAGTACCGCCACTGG Direct Loss 0.965032590658809 0 0.9365438 0 prediction 0.930065181317618 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25603066 chr22:25603066 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_47980 0 0 0 0 1 exosome 0.500231643921092 0 0.8730876 0.000463287842184856 hm5C_site_3300 DeepMRMD:0.8730876;iRNA_m5C:0.000463287842184856 3301 chr8 37963254 37963254 1 + C A STAD 37963254 + 37963234 37963274 41 AGTTCCGGGGAGGCTGAAGGCGGGTAAGAGGTCCTGCCGCC AGTTCCGGGGAGGCTGAAGGAGGGTAAGAGGTCCTGCCGCC Direct Loss 0.965013261020719 0 0.89299864 0 prediction 0.930026522041438 Functional Loss - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37963254 chr8:37963254 synonymous SNV . 0 21 hm5C_associated_SNPs_47981 0 0 1 0 1 chromatin 0.500231643921092 0 0.78599728 0.000463287842184856 hm5C_site_3301 DeepMRMD:0.78599728;iRNA_m5C:0.000463287842184856 3302 chr14 105958539 105958539 1 + C T COAD 105958539 + 105958519 105958559 41 AGGATGGCTCGCAGGGCAGTCGGGAGCTGCTGCTGGCTCTG AGGATGGCTCGCAGGGCAGTTGGGAGCTGCTGCTGGCTCTG Direct Loss 0.965011010477307 0 0.8941003 0 prediction 0.930022020954615 Functional Loss - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105958539 chr14:105958539 nonsynonymous SNV 0.841 4 21 hm5C_associated_SNPs_47982 0 0 1 0 0 Ribosome 0.500231615934608 0 0.7882006 0.000463231869216818 hm5C_site_3302 DeepMRMD:0.7882006;iRNA_m5C:0.000463231869216818 3303 chr11 65088649 65088649 1 + C T PAAD 65088649 + 65088629 65088669 41 GCACCGCCACCGTGTGTGGGCGGGAGCTCCCGGACGGCCCA GCACCGCCACCGTGTGTGGGTGGGAGCTCCCGGACGGCCCA Direct Loss 0.965002892417388 0 0.91769785 0 prediction 0.930005784834776 Functional Loss - CDC42EP2 ENSG00000149798 CDS Human protein_coding chr11:65088649 chr11:65088649 nonsynonymous SNV 0.987 1 21 hm5C_associated_SNPs_47983 0 0 1 0 0 Cytosol 0.500231643815359 0 0.8353957 0.00046328763071779 hm5C_site_3303 DeepMRMD:0.8353957;iRNA_m5C:0.00046328763071779 3304 chr16 2011826 2011826 1 + C A COAD 2011826 + 2011806 2011846 41 CTGGGGGCCTACAGTTCTGCCAGGAAGTGCCTGGCCAAACA CTGGGGGCCTACAGTTCTGCAAGGAAGTGCCTGGCCAAACA Direct Loss 0.964990044939402 0 0.7042792 0 prediction 0.929980089878804 Functional Loss - NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011826 chr16:2011826 nonsynonymous SNV 0.890 1 21 hm5C_associated_SNPs_47984 0 0 1 0 1 Ribosome 0.500231643922388 0 0.4085584 0.000463287844776783 hm5C_site_3304 DeepMRMD:0.4085584;iRNA_m5C:0.000463287844776783 3305 chr3 120499981 120499981 1 + C T rs115958474 120499981 + 120499961 120500001 41 ATGCGAGCACTGCTCATTCACGAGAAAAAGACTTCCTCTGC ATGCGAGCACTGCTCATTCATGAGAAAAAGACTTCCTCTGC Direct Loss 0.964976652227801 0 0.8958101 0 prediction 0.929953304455601 Functional Loss - GTF2E1 ENSG00000153767 CDS Human protein_coding chr3:120499981 chr3:120499981 synonymous SNV . 0 21 hm5C_associated_SNPs_47985 0 0 1 0 1 Cytosol 0.500231612662104 0 0.7916202 0.000463225324207617 hm5C_site_3305 DeepMRMD:0.7916202;iRNA_m5C:0.000463225324207617 3306 chr13 25264599 25264599 1 + C T LUAD 25264599 + 25264579 25264619 41 ACATCAGGGTGCTGTCTTCTCAGGGGTGTCGGGTAAGCGGC ACATCAGGGTGCTGTCTTCTTAGGGGTGTCGGGTAAGCGGC Direct Loss 0.964968594083426 0 0.93618613 0 prediction 0.929937188166852 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264599 chr13:25264599 stopgain 0.053 1 21 hm5C_associated_SNPs_47986 0 0 0 0 1 Nucleus 0.500231643921092 0 0.87237226 0.000463287842184856 hm5C_site_3306 DeepMRMD:0.87237226;iRNA_m5C:0.000463287842184856 3307 chr12 130822471 130822471 1 + C T rs35997018 130822471 + 130822451 130822491 41 ACAGACACGAGGCCGGCGCCCGGGAGGCGGTGTTCATCCGC ACAGACACGAGGCCGGCGCCTGGGAGGCGGTGTTCATCCGC Direct Loss 0.964958094338269 0 0.91771924 0 prediction 0.929916188676537 Functional Loss - PIWIL1 ENSG00000125207 UTR5 Human protein_coding chr12:130822471 chr12:130822471 . . 0 21 hm5C_associated_SNPs_47987 0 0 0 0 0 Nucleus 0.5002337051616 0 0.83543848 0.000467410323200745 hm5C_site_3307 DeepMRMD:0.83543848;iRNA_m5C:0.000467410323200745 3308 chr8 120886125 120886125 1 + C T LUSC 120886125 + 120886105 120886145 41 ACTGGCAGTGCTGGCAGTGACAGCAGCACCAGCGGGAGTGG ACTGGCAGTGCTGGCAGTGATAGCAGCACCAGCGGGAGTGG Direct Loss 0.964916522202253 0 0.6934326 0 prediction 0.929833044404505 Functional Loss - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:120886125 chr8:120886125 synonymous SNV . 0 21 hm5C_associated_SNPs_47988 0 0 0 0 1 exosome 0.500232623351178 0 0.3868652 0.000465246702355149 hm5C_site_3308 DeepMRMD:0.3868652;iRNA_m5C:0.000465246702355149 3309 chrX 30236752 30236752 1 + C T UCS 30236752 + 30236732 30236772 41 GTGAGAAACGCCGCAAGGCCCGAGATGAGACCCGGGGTCTC GTGAGAAACGCCGCAAGGCCTGAGATGAGACCCGGGGTCTC Direct Loss 0.964912420243159 0 0.5911511 0 prediction 0.929824840486317 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236752 chrX:30236752 stopgain 0.001 0 21 hm5C_associated_SNPs_47989 0 0 1 0 1 exosome 0.500231643921092 0 0.1823022 0.000463287842184856 hm5C_site_3309 DeepMRMD:0.1823022;iRNA_m5C:0.000463287842184856 3310 chr1 152882982 152882982 1 + C G rs7520711 152882982 + 152882962 152883002 41 AGGGGCAGCTGGAGCTCCCACAGCAGCAGGAGGGGCAGCTG AGGGGCAGCTGGAGCTCCCAGAGCAGCAGGAGGGGCAGCTG Direct Loss 0.964910636593925 0 0.48150817 0 prediction 0.92982127318785 Functional Loss - IVL ENSG00000163207 CDS Human protein_coding chr1:152882982 chr1:152882982 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_47990 0 0 0 0 0 unknown 0.500231643921093 0 0 0.000463287842185744 hm5C_site_3310 DeepMRMD:0;iRNA_m5C:0.000463287842185744 3311 chr8 91013751 91013751 1 + C T BLCA 91013751 + 91013731 91013771 41 CGGCCAGGGTTTTCTTTACTCTGGGGTCCCGGCTGCCCTGT CGGCCAGGGTTTTCTTTACTTTGGGGTCCCGGCTGCCCTGT Direct Loss 0.964907680036095 0 0.8448915 0 prediction 0.92981536007219 Functional Loss - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91013751 chr8:91013751 synonymous SNV . 0 21 hm5C_associated_SNPs_47991 0 0 1 0 0 Cytosol 0.50023195269498 0 0.689783 0.000463905389960217 hm5C_site_3311 DeepMRMD:0.689783;iRNA_m5C:0.000463905389960217 3312 chr8 145534897 145534897 1 + C T GBM 145534897 + 145534877 145534917 41 GGCGGGAGGTGGCCAGCCTTCGGCAGAAGCATGCCCAGCAA GGCGGGAGGTGGCCAGCCTTTGGCAGAAGCATGCCCAGCAA Direct Loss 0.964906967577747 0 0.900554 0 prediction 0.929813935155494 Functional Loss - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145534897 chr8:145534897 nonsynonymous SNV 0.980 2 21 hm5C_associated_SNPs_47992 0 0 1 0 2 chromatin 0.500231643921092 0 0.801108 0.000463287842184856 hm5C_site_3312 DeepMRMD:0.801108;iRNA_m5C:0.000463287842184856 3313 chr11 45921711 45921711 1 + C T rs560597368 45921711 + 45921691 45921731 41 CCCGCGCGCCGGGCTGCTCTCTGCGGGCGGCGGCGGCGCGG CCCGCGCGCCGGGCTGCTCTTTGCGGGCGGCGGCGGCGCGG Direct Loss 0.964878115079582 0 0.90864813 0 prediction 0.929756230159164 Functional Loss - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45921711 chr11:45921711 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_47993 0 0 0 0 1 Endoplasmic reticulum 0.500231644014304 0 0.81729626 0.000463288028607289 hm5C_site_3313 DeepMRMD:0.81729626;iRNA_m5C:0.000463288028607289 3314 chr19 17425177 17425177 1 + C A THCA 17425177 + 17425157 17425197 41 CCTCAGTCTACCTGCCTACCCGCGAGTACCCGTCTGAACAG CCTCAGTCTACCTGCCTACCAGCGAGTACCCGTCTGAACAG Direct Loss 0.964853869792291 0 0.6003982 0 prediction 0.929707739584582 Functional Loss - DDA1 ENSG00000130311 CDS Human protein_coding chr19:17425177 chr19:17425177 nonsynonymous SNV 0.805 1 21 hm5C_associated_SNPs_47994 0 0 0 0 1 Ribosome 0.500231559595409 0 0.2007964 0.00046311919081865 hm5C_site_3314 DeepMRMD:0.2007964;iRNA_m5C:0.00046311919081865 3315 chr11 103907855 103907855 1 + C A LUAD 103907855 + 103907835 103907875 41 CTTCAGTGGCATTGCGGTGCCTGGGACGTCCAGCTCCCGTC CTTCAGTGGCATTGCGGTGCATGGGACGTCCAGCTCCCGTC Direct Loss 0.964844657425617 0 0.5391518 0 prediction 0.929689314851234 Functional Loss - DDI1 ENSG00000170967 CDS Human protein_coding chr11:103907855 chr11:103907855 nonsynonymous SNV 0.051 4 21 hm5C_associated_SNPs_47995 0 0 0 0 0 exosome 0.500231643896209 0 0.0783035999999999 0.000463287792417333 hm5C_site_3315 DeepMRMD:0.0783035999999999;iRNA_m5C:0.000463287792417333 3316 chr11 113650686 113650686 1 + C T BLCA 113650686 + 113650666 113650706 41 TTTGGGAGGTCTGCGTGGATCGAGAGGAAGTCGCCACTGTG TTTGGGAGGTCTGCGTGGATTGAGAGGAAGTCGCCACTGTG Direct Loss 0.9648309398322 0 0.9231905 0 prediction 0.929661879664399 Functional Loss - CLDN25 ENSG00000228607 CDS Human protein_coding chr11:113650686 chr11:113650686 stopgain 0.993 0 21 hm5C_associated_SNPs_47996 0 0 0 0 0 unknown 0.500231643284811 0 0.846381 0.000463286569621246 hm5C_site_3316 DeepMRMD:0.846381;iRNA_m5C:0.000463286569621246 3317 chr20 44642908 44642908 1 + C T rs202160464 44642908 + 44642888 44642928 41 CTGTTCAGCGGGCGGCGCCTCTGGAGGTGAGCGCCGCCGCG CTGTTCAGCGGGCGGCGCCTTTGGAGGTGAGCGCCGCCGCG Direct Loss 0.964825279474904 0 0.773298 0 prediction 0.929650558949807 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642908 chr20:44642908 synonymous SNV . 0 21 hm5C_associated_SNPs_47997 1 0 0 0 1 Endoplasmic reticulum 0.500231643921093 0 0.546596 0.0004632878421853 hm5C_site_3317 DeepMRMD:0.546596;iRNA_m5C:0.0004632878421853 not specified not specified 3318 chr18 670782 670782 1 + C A LUAD 670782 + 670762 670802 41 CTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTCGGTG CTGCCAGCTGTACCAGAGATAGGGAGACATGGGCCTCGGTG Direct Loss 0.964820857456718 0 0.9552013 0 prediction 0.929641714913437 Functional Loss - TYMS ENSG00000176890 CDS Human protein_coding chr18:670782 chr18:670782 stopgain 0.988 1 21 hm5C_associated_SNPs_47998 0 0 1 0 2 Ribosome 0.500231603090736 0 0.9104026 0.000463206181471554 hm5C_site_3318 DeepMRMD:0.9104026;iRNA_m5C:0.000463206181471554 3319 chr15 63335907 63335907 1 + C G rs201720832 63335907 + 63335887 63335927 41 GCCCGCCGCTGCCCCCAGCTCGAGGAGGACATCGCGGCCAA GCCCGCCGCTGCCCCCAGCTGGAGGAGGACATCGCGGCCAA Direct Loss 0.96478626476062 0 0.9311687 0 prediction 0.92957252952124 Functional Loss - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63335907 chr15:63335907 synonymous SNV . 0 21 hm5C_associated_SNPs_47999 1 0 1 0 1 Ribosome 0.500231643921092 0 0.8623374 0.000463287842184856 hm5C_site_3319 DeepMRMD:0.8623374;iRNA_m5C:0.000463287842184856 not specified not specified 3320 chr11 27016451 27016451 1 + C T SKCM 27016451 + 27016431 27016471 41 CGGCGGGAGTCCCACCAGATCGGGGATGCCTACTCCAACTC CGGCGGGAGTCCCACCAGATTGGGGATGCCTACTCCAACTC Direct Loss 0.964775172606053 0 0.93214643 0 prediction 0.929550345212106 Functional Loss - FIBIN ENSG00000176971 CDS Human protein_coding chr11:27016451 chr11:27016451 synonymous SNV . 0 21 hm5C_associated_SNPs_48000 0 0 0 0 0 exosome 0.500231638361032 0 0.86429286 0.000463276722064032 hm5C_site_3320 DeepMRMD:0.86429286;iRNA_m5C:0.000463276722064032 3321 chr4 40245367 40245367 1 + C T UCEC 40245367 + 40245347 40245387 41 TGGCCACCCAGACTGACCAGCGGGAGATGGGGCCCCACAGG TGGCCACCCAGACTGACCAGTGGGAGATGGGGCCCCACAGG Direct Loss 0.964769703724197 0 0.9504847 0 prediction 0.929539407448393 Functional Loss - RHOH ENSG00000168421 CDS Human protein_coding chr4:40245367 chr4:40245367 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_48001 0 0 0 0 0 Cytosol 0.500231644306517 0 0.9009694 0.000463288613034685 hm5C_site_3321 DeepMRMD:0.9009694;iRNA_m5C:0.000463288613034685 3322 chr15 45564553 45564553 1 + C A LUAD 45564553 + 45564533 45564573 41 TGTGGTCAGGGCCCTCTTCACAGGGGCCTGTGTATCCCTTA TGTGGTCAGGGCCCTCTTCAAAGGGGCCTGTGTATCCCTTA Direct Loss 0.964757226192719 0 0.93459415 0 prediction 0.929514452385437 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45564553 chr15:45564553 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_48002 0 0 0 0 2 Nucleus 0.500231643921088 0 0.8691883 0.000463287842176863 hm5C_site_3322 DeepMRMD:0.8691883;iRNA_m5C:0.000463287842176863 3323 chr20 4705364 4705364 1 + C A rs35453518 4705364 + 4705344 4705384 41 CCAGGTGGCTGAGAACCGCCCGGGAGCCTTCATCAAGCAAG CCAGGTGGCTGAGAACCGCCAGGGAGCCTTCATCAAGCAAG Direct Loss 0.964755641625645 0 0.41439557 0 prediction 0.929511283251289 Functional Loss - PRND ENSG00000171864 CDS Human protein_coding chr20:4705364 chr20:4705364 nonsynonymous SNV 0.579 2 21 hm5C_associated_SNPs_48003 0 0 0 0 0 Nucleus 0.500231647106829 0 0 0.000463294213657317 hm5C_site_3323 DeepMRMD:0;iRNA_m5C:0.000463294213657317 3324 chr11 57135570 57135570 1 + C T rs200102602 57135570 + 57135550 57135590 41 CGCTTCGACGTGCTGGTATACGGGAATGTGAGTCCATGGGC CGCTTCGACGTGCTGGTATATGGGAATGTGAGTCCATGGGC Direct Loss 0.964753870598917 0 0.80274355 0 prediction 0.929507741197835 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57135570 chr11:57135570 synonymous SNV 0.985 0 21 hm5C_associated_SNPs_48004 0 0 0 0 2 exosome 0.500231643150516 0 0.6054871 0.000463286301032317 hm5C_site_3324 DeepMRMD:0.6054871;iRNA_m5C:0.000463286301032317 3325 chr19 44339668 44339668 1 + C A LGG 44339668 + 44339648 44339688 41 CCTCCCCAGTTCTGGCTTTTCTGGATTCTGTGCTTCACCAA CCTCCCCAGTTCTGGCTTTTATGGATTCTGTGCTTCACCAA Direct Loss 0.96475068952175 0 0.47196302 0 prediction 0.929501379043501 Functional Loss - ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44339668 chr19:44339668 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_48005 0 0 1 0 2 Nucleus 0.500231645739048 0 0 0.00046329147809554 hm5C_site_3325 DeepMRMD:0;iRNA_m5C:0.00046329147809554 3326 chr19 49671280 49671280 1 + C T rs201410152 49671280 + 49671260 49671300 41 GGTGTCAGTGCTGGGGGGATCGGGGGGCCCCGTCCTCCAGA GGTGTCAGTGCTGGGGGGATTGGGGGGCCCCGTCCTCCAGA Direct Loss 0.964736420364399 0 0.97050846 0 prediction 0.929472840728798 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671280 chr19:49671280 nonsynonymous SNV 0.693 2 21 hm5C_associated_SNPs_48006 0 0 1 0 1 chromatin 0.500231643921109 0 0.94101692 0.000463287842218163 hm5C_site_3326 DeepMRMD:0.94101692;iRNA_m5C:0.000463287842218163 3327 chr19 843363 843363 1 + C A rs562312874 843363 + 843343 843383 41 GCACTGACCGGGTTGCAGATCGGGAGACGGAGGCTCGGAGA GCACTGACCGGGTTGCAGATAGGGAGACGGAGGCTCGGAGA Direct Loss 0.964699514773442 0 0.94149125 0 prediction 0.929399029546883 Functional Loss - PRTN3 ENSG00000196415 UTR5 Human protein_coding chr19:843363 chr19:843363 . . 0 21 hm5C_associated_SNPs_48007 0 0 0 0 0 exosome 0.5002315259082 0 0.8829825 0.000463051816400828 hm5C_site_3327 DeepMRMD:0.8829825;iRNA_m5C:0.000463051816400828 3328 chr19 35850463 35850463 1 + C T LUAD 35850463 + 35850443 35850483 41 CCGCCGGCAGAGGAGGGTGGCGGGGCTGTTGGCGGCCACGC CCGCCGGCAGAGGAGGGTGGTGGGGCTGTTGGCGGCCACGC Direct Loss 0.964692557908252 0 0.91850054 0 prediction 0.929385115816504 Functional Loss - FFAR3 ENSG00000185897 CDS Human protein_coding chr19:35850463 chr19:35850463 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48008 0 0 0 0 0 exosome 0.500231643921092 0 0.83700108 0.000463287842184856 hm5C_site_3328 DeepMRMD:0.83700108;iRNA_m5C:0.000463287842184856 3329 chr18 29099859 29099859 1 + C T OV 29099859 + 29099839 29099879 41 TCACCGCCCCCGTGGCTCTTCGGGAGGGAGAGGATCTGTCC TCACCGCCCCCGTGGCTCTTTGGGAGGGAGAGGATCTGTCC Direct Loss 0.964688456240517 0 0.90064585 0 prediction 0.929376912481034 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29099859 chr18:29099859 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_48009 0 0 1 0 2 Endoplasmic reticulum 0.500231644970925 0 0.8012917 0.000463289941849299 hm5C_site_3329 DeepMRMD:0.8012917;iRNA_m5C:0.000463289941849299 3330 chr10 35897422 35897422 1 + C T rs371212610 35897422 + 35897402 35897442 41 GACCCCAGGGGCTCAGGATCCGAGGAGCAGCCCTCAGCAGC GACCCCAGGGGCTCAGGATCTGAGGAGCAGCCCTCAGCAGC Direct Loss 0.964686928443861 0 0.9227782 0 prediction 0.929373856887721 Functional Loss - GJD4 ENSG00000177291 CDS Human protein_coding chr10:35897422 chr10:35897422 synonymous SNV . 0 21 hm5C_associated_SNPs_48010 0 0 0 0 0 exosome 0.500231643921092 0 0.8455564 0.000463287842183302 hm5C_site_3330 DeepMRMD:0.8455564;iRNA_m5C:0.000463287842183302 3331 chr1 156028163 156028163 1 + C T COAD 156028163 + 156028143 156028183 41 CCCAAGTGGCGGCATCTTAACGGCATTGGTGGAAGCTGGGG CCCAAGTGGCGGCATCTTAATGGCATTGGTGGAAGCTGGGG Direct Loss 0.964685293162286 0 0.5891903 0 prediction 0.929370586324572 Functional Loss - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156028163 chr1:156028163 nonsynonymous SNV 0.046 1 21 hm5C_associated_SNPs_48011 0 0 1 0 1 Ribosome 0.500231643921092 0 0.1783806 0.000463287842184856 hm5C_site_3331 DeepMRMD:0.1783806;iRNA_m5C:0.000463287842184856 3332 chr1 36788238 36788238 1 + C A rs542369630 36788238 + 36788218 36788258 41 GGCCGCGGGCGGGGCGCCCACGAGATGCTGATGACGAGCAG GGCCGCGGGCGGGGCGCCCAAGAGATGCTGATGACGAGCAG Direct Loss 0.964679441973519 0 0.8900056 0 prediction 0.929358883947038 Functional Loss - EVA1B ENSG00000142694 CDS Human protein_coding chr1:36788238 chr1:36788238 synonymous SNV . 0 21 hm5C_associated_SNPs_48012 0 0 1 0 0 exosome 0.500231644495524 0 0.7800112 0.000463288991047195 hm5C_site_3332 DeepMRMD:0.7800112;iRNA_m5C:0.000463288991047195 3333 chr5 140482431 140482431 1 + C T rs201086790 140482431 + 140482411 140482451 41 GGTGCCCGAGGGCCCCTTTCCAGGGCAGATGGTGGACGTGA GGTGCCCGAGGGCCCCTTTCTAGGGCAGATGGTGGACGTGA Direct Loss 0.964665732120397 0 0.9415521 0 prediction 0.929331464240794 Functional Loss - PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140482431 chr5:140482431 nonsynonymous SNV 0.050 2 21 hm5C_associated_SNPs_48013 0 0 0 0 0 exosome 0.500231535699861 0 0.8831042 0.000463071399721349 hm5C_site_3333 DeepMRMD:0.8831042;iRNA_m5C:0.000463071399721349 3334 chr12 54676893 54676893 1 + C G LIHC 54676893 + 54676873 54676913 41 AGGAGGCGGCCCTGGTTACTCTGGAGGAAGCAGAGGCTATG AGGAGGCGGCCCTGGTTACTGTGGAGGAAGCAGAGGCTATG Direct Loss 0.964665361662888 0 0.5360369 0 prediction 0.929330723325775 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54676893 chr12:54676893 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_48014 0 0 1 1 1 Cytosol 0.500231643921093 0 0.0720738000000001 0.0004632878421853 hm5C_site_3334 DeepMRMD:0.0720738000000001;iRNA_m5C:0.0004632878421853 3335 chr11 55798158 55798158 1 + C T SKCM 55798158 + 55798138 55798178 41 CTGGCAAACTTCTTGGCATCCAGGAAAAGCATCTCTCCTTA CTGGCAAACTTCTTGGCATCTAGGAAAAGCATCTCTCCTTA Direct Loss 0.964659591068231 0 0.6120404 0 prediction 0.929319182136462 Functional Loss - OR5AS1 ENSG00000181785 CDS Human protein_coding chr11:55798158 chr11:55798158 synonymous SNV . 0 21 hm5C_associated_SNPs_48015 0 0 0 0 0 unknown 0.500231643924357 0 0.2240808 0.0004632878487143 hm5C_site_3335 DeepMRMD:0.2240808;iRNA_m5C:0.0004632878487143 3336 chr12 81112735 81112735 1 + C A HNSC 81112735 + 81112715 81112755 41 AGCAACCTGGGTTGCCTCTCCAGGATCTGGCTTCTCTCTCT AGCAACCTGGGTTGCCTCTCAAGGATCTGGCTTCTCTCTCT Direct Loss 0.964647273465386 0 0.91257405 0 prediction 0.929294546930771 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81112735 chr12:81112735 nonsynonymous SNV 0.797 2 21 hm5C_associated_SNPs_48016 0 0 0 0 1 unknown 0.500231563001297 0 0.8251481 0.00046312600259335 hm5C_site_3336 DeepMRMD:0.8251481;iRNA_m5C:0.00046312600259335 3337 chrX 46434198 46434198 1 + C T CESC 46434198 + 46434178 46434218 41 TGAAGGTGGTGCAGCTTTTCCGCGACCCGAGGGCGGTGCAC TGAAGGTGGTGCAGCTTTTCTGCGACCCGAGGGCGGTGCAC Direct Loss 0.964642678084707 0 0.8697576 0 prediction 0.929285356169415 Functional Loss - CHST7 ENSG00000147119 CDS Human protein_coding chrX:46434198 chrX:46434198 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_48017 0 0 1 0 0 Endoplasmic reticulum 0.500231652906078 0 0.7395152 0.000463305812156367 hm5C_site_3337 DeepMRMD:0.7395152;iRNA_m5C:0.000463305812156367 3338 chr8 1765429 1765429 1 + C T SKCM 1765429 + 1765409 1765449 41 CCGAAGCCTGCCCGGCTCCTCGGGAACCTGCCTCCCGCATG CCGAAGCCTGCCCGGCTCCTTGGGAACCTGCCTCCCGCATG Direct Loss 0.964636852132315 0 0.9341214 0 prediction 0.929273704264631 Functional Loss - MIR596 ENSG00000207826 ncRNA_exonic Human miRNA chr8:1765429 chr8:1765429 . . 0 21 hm5C_associated_SNPs_48018 0 0 0 0 0 unknown 0.500231643921092 0 0.8682428 0.000463287842184856 hm5C_site_3338 DeepMRMD:0.8682428;iRNA_m5C:0.000463287842184856 3339 chr19 6739716 6739716 1 + C G rs564768719 6739716 + 6739696 6739736 41 TCCCCGGGGAGGGCGGCGGGCGGCGGGCGGCGGGGACCGGG TCCCCGGGGAGGGCGGCGGGGGGCGGGCGGCGGGGACCGGG Direct Loss 0.964624501262189 0 0.90066236 0 prediction 0.929249002524378 Functional Loss - TRIP10 ENSG00000125733 UTR5 Human protein_coding chr19:6739716 chr19:6739716 . . 0 21 hm5C_associated_SNPs_48019 0 0 1 0 1 Ribosome 0.500178906595455 0 0.80132472 0.000357813190909662 hm5C_site_3339 DeepMRMD:0.80132472;iRNA_m5C:0.000357813190909662 3340 chr3 32933231 32933231 1 + C T BLCA 32933231 + 32933211 32933251 41 GGGCAGATGGACCGCCCTTCCGGCATCGCCATCACCCCCGA GGGCAGATGGACCGCCCTTCTGGCATCGCCATCACCCCCGA Direct Loss 0.964611645469662 0 0.7894708 0 prediction 0.929223290939325 Functional Loss - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32933231 chr3:32933231 synonymous SNV . 0 21 hm5C_associated_SNPs_48020 0 0 1 0 0 cytosol 0.500231643280213 0 0.5789416 0.000463286560425269 hm5C_site_3340 DeepMRMD:0.5789416;iRNA_m5C:0.000463286560425269 3341 chr2 239359541 239359541 1 + G A rs576908219 239359541 - 239359521 239359561 41 GCCGGTAGGGATCCAGGCCCCGGGAGGCCAGGCCTGCTTGC GCCGGTAGGGATCCAGGCCCTGGGAGGCCAGGCCTGCTTGC Direct Loss 0.96461037081988 0 0.92659605 0 prediction 0.929220741639761 Functional Loss - ASB1 ENSG00000065802 UTR3 Human protein_coding chr2:239359541 chr2:239359541 . . 0 21 hm5C_associated_SNPs_48021 0 0 0 0 0 Ribosome 0.500231643921076 0 0.8531921 0.000463287842152882 hm5C_site_3341 DeepMRMD:0.8531921;iRNA_m5C:0.000463287842152882 3342 chr1 167095230 167095230 1 + C A LUSC 167095230 + 167095210 167095250 41 AGAGAGAAGAGGACTATGGCCGGGAGGGGGGATCAGCTGAG AGAGAGAAGAGGACTATGGCAGGGAGGGGGGATCAGCTGAG Direct Loss 0.964602591254144 0 0.88571537 0 prediction 0.929205182508288 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167095230 chr1:167095230 synonymous SNV . 0 21 hm5C_associated_SNPs_48022 0 0 0 0 0 Endoplasmic reticulum 0.500231643921091 0 0.77143074 0.000463287842182858 hm5C_site_3342 DeepMRMD:0.77143074;iRNA_m5C:0.000463287842182858 3343 chr2 127454072 127454072 1 + C T rs564342506 127454072 + 127454052 127454092 41 TGAGGGGGTGCTGGGGTACCCGGGGGCTGGGGAAGCAAGGA TGAGGGGGTGCTGGGGTACCTGGGGGCTGGGGAAGCAAGGA Direct Loss 0.96457431077784 0 0.91071284 0 prediction 0.92914862155568 Functional Loss - GYPC ENSG00000136732 UTR3 Human protein_coding chr2:127454072 chr2:127454072 . . 0 21 hm5C_associated_SNPs_48023 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0 0.82142568 0.000463287842184856 hm5C_site_3343 DeepMRMD:0.82142568;iRNA_m5C:0.000463287842184856 3344 chrX 47038780 47038780 1 + C T STAD 47038780 + 47038760 47038800 41 AGACACTGCCACTGGGTGGCCGGGAGCTGAGCCAGGGCCTG AGACACTGCCACTGGGTGGCTGGGAGCTGAGCCAGGGCCTG Direct Loss 0.964568564927663 0 0.90946305 0 prediction 0.929137129855327 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47038780 chrX:47038780 nonsynonymous SNV 0.989 2 21 hm5C_associated_SNPs_48024 0 0 1 0 1 Ribosome 0.500231643921013 0 0.8189261 0.000463287842025206 hm5C_site_3344 DeepMRMD:0.8189261;iRNA_m5C:0.000463287842025206 3345 chr11 118764479 118764479 1 + C T UCEC 118764479 + 118764459 118764499 41 ACGTCCTGGTGCTGGTGATCCTGGAGCGGCACCGGCAGACA ACGTCCTGGTGCTGGTGATCTTGGAGCGGCACCGGCAGACA Direct Loss 0.964564624695241 0 0.42708194 0 prediction 0.929129249390481 Functional Loss - CXCR5 ENSG00000160683 CDS Human protein_coding chr11:118764479 chr11:118764479 synonymous SNV . 0 21 hm5C_associated_SNPs_48025 0 0 0 0 0 chromatin 0.500231644123932 0 0 0.000463288247863236 hm5C_site_3345 DeepMRMD:0;iRNA_m5C:0.000463288247863236 Depressive symptoms 3346 chr19 17417054 17417054 1 + C A BLCA 17417054 + 17417034 17417074 41 AGCAGGCCCGGGGCAAGGCTCGCGGGAATGAGTATCAGCCG AGCAGGCCCGGGGCAAGGCTAGCGGGAATGAGTATCAGCCG Direct Loss 0.964564350870275 0 0.90752083 0 prediction 0.929128701740549 Functional Loss - MRPL34 ENSG00000130312 CDS Human protein_coding chr19:17417054 chr19:17417054 nonsynonymous SNV 0.350 4 21 hm5C_associated_SNPs_48026 0 0 1 0 1 Ribosome 0.500231643921067 0 0.81504166 0.000463287842134896 hm5C_site_3346 DeepMRMD:0.81504166;iRNA_m5C:0.000463287842134896 3347 chr1 209849324 209849324 1 + C T HNSC 209849324 + 209849304 209849344 41 GCGGCCGGGCCCTGTCCAACCGGCAGCACGCCTCCTAGGAA GCGGCCGGGCCCTGTCCAACTGGCAGCACGCCTCCTAGGAA Direct Loss 0.96455053949756 0 0.6476032 0 prediction 0.92910107899512 Functional Loss - G0S2 ENSG00000123689 CDS Human protein_coding chr1:209849324 chr1:209849324 nonsynonymous SNV 0.103 3 21 hm5C_associated_SNPs_48027 0 0 1 0 0 exosome 0.500231643921092 0 0.2952064 0.000463287842184856 hm5C_site_3347 DeepMRMD:0.2952064;iRNA_m5C:0.000463287842184856 3348 chr7 141408858 141408858 1 + C G rs200952105 141408858 + 141408838 141408878 41 ACACCAGCCCAACCAGACAGCAGGAGCAAGCTGCTGCCCAG ACACCAGCCCAACCAGACAGGAGGAGCAAGCTGCTGCCCAG Direct Loss 0.964548404405547 0 0.84108734 0 prediction 0.929096808811095 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141408858 chr7:141408858 nonsynonymous SNV 0.007 0 21 hm5C_associated_SNPs_48028 0 0 0 0 1 exosome 0.500231642698721 0 0.68217468 0.00046328539744267 hm5C_site_3348 DeepMRMD:0.68217468;iRNA_m5C:0.00046328539744267 3349 chr19 45912960 45912960 1 + C G LUAD 45912960 + 45912940 45912980 41 ACTTTCAAGAAGGGCTCGTGCAGGACATCAAACAGCCTCCG ACTTTCAAGAAGGGCTCGTGGAGGACATCAAACAGCCTCCG Direct Loss 0.964536268307899 0 0.47409666 0 prediction 0.929072536615797 Functional Loss - ERCC1 ENSG00000012061 CDS Human protein_coding chr19:45912960 chr19:45912960 nonsynonymous SNV 0.786 0 21 hm5C_associated_SNPs_48029 0 0 1 1 0 Cytosol 0.500231643913364 0 0 0.000463287826727665 hm5C_site_3349 DeepMRMD:0;iRNA_m5C:0.000463287826727665 3350 chr16 56839443 56839443 1 + C T UCEC 56839443 + 56839423 56839463 41 GCATGGCTGAGGAGTACCATCGGGAGTCAATGTTGGTTGAG GCATGGCTGAGGAGTACCATTGGGAGTCAATGTTGGTTGAG Direct Loss 0.964534062443646 0 0.9134739 0 prediction 0.929068124887293 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56839443 chr16:56839443 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_48030 0 0 1 0 1 Nucleus 0.500231653175915 0 0.8269478 0.000463306351830006 hm5C_site_3350 DeepMRMD:0.8269478;iRNA_m5C:0.000463306351830006 3351 chr19 17452077 17452077 1 + C T UCEC 17452077 + 17452057 17452097 41 CCTGCTGCTGTCCTGTCTGACGGGAGAGGGGCTGGACGGCC CCTGCTGCTGTCCTGTCTGATGGGAGAGGGGCTGGACGGCC Direct Loss 0.96453061776216 0 0.9210428 0 prediction 0.92906123552432 Functional Loss - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17452077 chr19:17452077 nonsynonymous SNV 0.006 4 21 hm5C_associated_SNPs_48031 0 0 1 0 0 Ribosome 0.500231643921099 0 0.8420856 0.000463287842198845 hm5C_site_3351 DeepMRMD:0.8420856;iRNA_m5C:0.000463287842198845 3352 chrX 153666940 153666940 1 + C T STAD 153666940 + 153666920 153666960 41 ATGGACCGGAACCCCTACTACGGGGGCGAGAGCTCCTCCAT ATGGACCGGAACCCCTACTATGGGGGCGAGAGCTCCTCCAT Direct Loss 0.964504745330332 0 0.9348258 0 prediction 0.929009490660665 Functional Loss - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153666940 chrX:153666940 synonymous SNV . 0 21 hm5C_associated_SNPs_48032 0 0 1 0 2 Cytosol 0.500231643894768 0 0.8696516 0.00046328778953586 hm5C_site_3352 DeepMRMD:0.8696516;iRNA_m5C:0.00046328778953586 3353 chr7 99654807 99654807 1 + C T PAAD 99654807 + 99654787 99654827 41 ACCATGATACCCCTGGACCCCGAGAGGCCCTGAGCCAACTC ACCATGATACCCCTGGACCCTGAGAGGCCCTGAGCCAACTC Direct Loss 0.96450416870122 0 0.88221824 0 prediction 0.92900833740244 Functional Loss - ZSCAN21 ENSG00000166529 CDS Human protein_coding chr7:99654807 chr7:99654807 stopgain 0.139 0 21 hm5C_associated_SNPs_48033 0 0 0 0 0 chromatin 0.500285716786704 0 0.76443648 0.000571433573408608 hm5C_site_3353 DeepMRMD:0.76443648;iRNA_m5C:0.000571433573408608 3354 chr6 144507918 144507918 1 + C T SKCM 144507918 + 144507898 144507938 41 ACCGAGACATCCGGGACATTCAGGATGAAAACCAGCTGCTG ACCGAGACATCCGGGACATTTAGGATGAAAACCAGCTGCTG Direct Loss 0.964490588189177 0 0.91359985 0 prediction 0.928981176378354 Functional Loss - STX11 ENSG00000135604 CDS Human protein_coding chr6:144507918 chr6:144507918 stopgain 0.986 0 21 hm5C_associated_SNPs_48034 0 0 0 0 0 Nucleus 0.500235516418999 0 0.8271997 0.000471032837998431 hm5C_site_3354 DeepMRMD:0.8271997;iRNA_m5C:0.000471032837998431 3355 chr16 57597817 57597817 1 + C T GBM 57597817 + 57597797 57597837 41 AGTTCCCCGCCGAGCTGACCCGGGACGCCTGCAAGACCCGC AGTTCCCCGCCGAGCTGACCTGGGACGCCTGCAAGACCCGC Direct Loss 0.96448518761249 0 0.73082733 0 prediction 0.928970375224981 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597817 chr16:57597817 nonsynonymous SNV 0.017 2 21 hm5C_associated_SNPs_48035 0 0 0 0 2 Ribosome 0.500231643841939 0 0.46165466 0.000463287683878599 hm5C_site_3355 DeepMRMD:0.46165466;iRNA_m5C:0.000463287683878599 3356 chrX 18646646 18646646 1 + C T UCEC 18646646 + 18646626 18646666 41 CCCCTGAGCCAGGCCTCTGGCGGGAGCAGCAACATCCGGCA CCCCTGAGCCAGGCCTCTGGTGGGAGCAGCAACATCCGGCA Direct Loss 0.964471539920922 0 0.9112915 0 prediction 0.928943079841844 Functional Loss - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18646646 chrX:18646646 synonymous SNV . 0 21 hm5C_associated_SNPs_48036 0 0 0 0 1 Endoplasmic reticulum 0.500231643921091 0 0.822583 0.000463287842181526 hm5C_site_3356 DeepMRMD:0.822583;iRNA_m5C:0.000463287842181526 3357 chr3 111718443 111718443 1 + C T rs34554755 111718443 + 111718423 111718463 41 TTTCAGAAATGGTTAATGGACGGGACGGTAAGGCCGGCAGC TTTCAGAAATGGTTAATGGATGGGACGGTAAGGCCGGCAGC Direct Loss 0.964459849868519 0 0.3355837 0 prediction 0.928919699737038 Functional Loss - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111718443 chr3:111718443 synonymous SNV . 0 21 hm5C_associated_SNPs_48037 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3357 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3358 chr8 123966079 123966079 1 + C T UCEC 123966079 + 123966059 123966099 41 ACCGGTCAGAGGGCAGCAGCCGGGACGGCCAGGGTAGCGAC ACCGGTCAGAGGGCAGCAGCTGGGACGGCCAGGGTAGCGAC Direct Loss 0.964455981024009 0 0.87089044 0 prediction 0.928911962048018 Functional Loss - ZHX2 ENSG00000178764 CDS Human protein_coding chr8:123966079 chr8:123966079 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_48038 0 0 0 0 0 Nucleus 0.500231643679619 0 0.74178088 0.000463287359238285 hm5C_site_3358 DeepMRMD:0.74178088;iRNA_m5C:0.000463287359238285 3359 chr19 6751236 6751236 1 + C T rs202066006 6751236 + 6751216 6751256 41 CAATTGAACCCTGCCAGAGACGGGAAGAGGGGGGCTGTCGG CAATTGAACCCTGCCAGAGATGGGAAGAGGGGGGCTGTCGG Direct Loss 0.964448915590025 0 0.91455626 0 prediction 0.928897831180049 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751236 chr19:6751236 nonsynonymous SNV 0.019 0 21 hm5C_associated_SNPs_48039 0 0 1 0 0 Ribosome 0.500231643921092 0 0.82911252 0.000463287842184856 hm5C_site_3359 DeepMRMD:0.82911252;iRNA_m5C:0.000463287842184856 3360 chr19 35758446 35758446 1 + C T LUSC 35758446 + 35758426 35758466 41 ACCACCGTACCCGGGACCCTCGGGACAACGGCTCCAGGTCC ACCACCGTACCCGGGACCCTTGGGACAACGGCTCCAGGTCC Direct Loss 0.964418447378243 0 0.91661465 0 prediction 0.928836894756486 Functional Loss - LSR ENSG00000105699 CDS Human protein_coding chr19:35758446 chr19:35758446 nonsynonymous SNV 0.392 3 21 hm5C_associated_SNPs_48040 0 0 1 0 0 chromatin 0.500231643921092 0 0.8332293 0.000463287842184856 hm5C_site_3360 DeepMRMD:0.8332293;iRNA_m5C:0.000463287842184856 3361 chr10 75675065 75675065 1 + C T COAD 75675065 + 75675045 75675085 41 TTGTGAAGCTGATTTCCCACCGGGAGTGTCAGCAGCCCCAC TTGTGAAGCTGATTTCCCACTGGGAGTGTCAGCAGCCCCAC Direct Loss 0.964405333884591 0 0.8687883 0 prediction 0.928810667769183 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75675065 chr10:75675065 nonsynonymous SNV 0.072 3 21 hm5C_associated_SNPs_48041 0 0 0 0 2 Endoplasmic reticulum 0.500231643919744 0 0.7375766 0.000463287839487903 hm5C_site_3361 DeepMRMD:0.7375766;iRNA_m5C:0.000463287839487903 3362 chr3 122103141 122103141 1 + C T rs140995238 122103141 + 122103121 122103161 41 CCTCAGCGGTCTGCGCCTGGCAGCAGGTGAGACGCCGGTCG CCTCAGCGGTCTGCGCCTGGTAGCAGGTGAGACGCCGGTCG Direct Loss 0.964395601646905 0 0.82964826 0 prediction 0.92879120329381 Functional Loss - FAM162A ENSG00000114023 CDS Human protein_coding chr3:122103141 chr3:122103141 nonsynonymous SNV 0.014 0 21 hm5C_associated_SNPs_48042 0 0 1 0 1 Ribosome 0.500231643918426 0 0.65929652 0.000463287836852011 hm5C_site_3362 DeepMRMD:0.65929652;iRNA_m5C:0.000463287836852011 3363 chr2 3391659 3391659 1 + C T COAD 3391659 + 3391639 3391679 41 CGGGCGACCTGGGCCGAGTGCGGGACGAAGCTGAGCCCGGA CGGGCGACCTGGGCCGAGTGTGGGACGAAGCTGAGCCCGGA Direct Loss 0.964394994599723 0 0.9064289 0 prediction 0.928789989199447 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3391659 chr2:3391659 nonsynonymous SNV 0.012 1 21 hm5C_associated_SNPs_48043 0 0 0 0 0 Ribosome 0.500231643920228 0 0.8128578 0.000463287840455129 hm5C_site_3363 DeepMRMD:0.8128578;iRNA_m5C:0.000463287840455129 3364 chr19 16772042 16772042 1 + C T rs141700561 16772042 + 16772022 16772062 41 GGGCGCCATGGAGCTGCTCTCGGCGCTGAGCCTGGGCGAAC GGGCGCCATGGAGCTGCTCTTGGCGCTGAGCCTGGGCGAAC Direct Loss 0.96435993542067 0 0.9396845 0 prediction 0.92871987084134 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16772042 chr19:16772042 nonsynonymous SNV 0.990 0 21 hm5C_associated_SNPs_48044 0 0 0 0 0 Ribosome 0.500231643921109 0 0.879369 0.000463287842217275 hm5C_site_3364 DeepMRMD:0.879369;iRNA_m5C:0.000463287842217275 3365 chr17 38318390 38318390 1 + C T STAD 38318390 + 38318370 38318410 41 ATGATCTTCGAGGGCAAACTCAGGAGGAGGAAGTCAGGTAA ATGATCTTCGAGGGCAAACTTAGGAGGAGGAAGTCAGGTAA Direct Loss 0.964348372456133 0 0.91682875 0 prediction 0.928696744912265 Functional Loss - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318390 chr17:38318390 stopgain 1.000 1 21 hm5C_associated_SNPs_48045 0 0 1 0 1 Ribosome 0.500231643921092 0 0.8336575 0.000463287842184856 hm5C_site_3365 DeepMRMD:0.8336575;iRNA_m5C:0.000463287842184856 3366 chr1 228334618 228334618 1 + C T GBM 228334618 + 228334598 228334638 41 CATCGAGCATGCCGAGTTCTCGGGGAACCTGTATGGCACGA CATCGAGCATGCCGAGTTCTTGGGGAACCTGTATGGCACGA Direct Loss 0.964340224317347 0 0.9469098 0 prediction 0.928680448634695 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228334618 chr1:228334618 nonsynonymous SNV 0.780 3 21 hm5C_associated_SNPs_48046 0 0 1 0 2 Endoplasmic reticulum 0.500231643964599 0 0.8938196 0.000463287929197698 hm5C_site_3366 DeepMRMD:0.8938196;iRNA_m5C:0.000463287929197698 3367 chr12 52285057 52285057 1 + C T UCEC 52285057 + 52285037 52285077 41 TCAGGATAGAGAAGAGGAAACAGGAGGAGGAGGCCAGAATG TCAGGATAGAGAAGAGGAAATAGGAGGAGGAGGCCAGAATG Direct Loss 0.964338744771562 0 0.8923476 0 prediction 0.928677489543124 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52285057 chr12:52285057 stopgain 0.818 1 21 hm5C_associated_SNPs_48047 0 0 0 1 1 unknown 0.500231643921093 0 0.7846952 0.000463287842186189 hm5C_site_3367 DeepMRMD:0.7846952;iRNA_m5C:0.000463287842186189 3368 chr12 58015609 58015609 1 + C A OV 58015609 + 58015589 58015629 41 CCGGCTACCCACGCCGATCCCGGGGGAAGTCGTCTTGGTGA CCGGCTACCCACGCCGATCCAGGGGGAAGTCGTCTTGGTGA Direct Loss 0.964335552316864 0 0.942259 0 prediction 0.928671104633727 Functional Loss - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58015609 chr12:58015609 nonsynonymous SNV 0.476 4 21 hm5C_associated_SNPs_48048 0 0 1 1 1 chromatin 0.500231643921079 0 0.884518 0.000463287842157545 hm5C_site_3368 DeepMRMD:0.884518;iRNA_m5C:0.000463287842157545 3369 chr17 48614455 48614455 1 + C A LIHC 48614455 + 48614435 48614475 41 GCGAGGACTACAGCCGCTCCCGGGGCTCCCCGTCCTCCTAC GCGAGGACTACAGCCGCTCCAGGGGCTCCCCGTCCTCCTAC Direct Loss 0.964323265297151 0 0.9492041 0 prediction 0.928646530594301 Functional Loss - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48614455 chr17:48614455 synonymous SNV . 0 21 hm5C_associated_SNPs_48049 0 0 0 0 1 Nucleus 0.500231643921282 0 0.8984082 0.000463287842564553 hm5C_site_3369 DeepMRMD:0.8984082;iRNA_m5C:0.000463287842564553 3370 chr19 7965363 7965363 1 + C A UCEC 7965363 + 7965343 7965383 41 CCTGAGCACGTGCGGAAGCTCAGGAGCCTGGAGCAGCTCTA CCTGAGCACGTGCGGAAGCTAAGGAGCCTGGAGCAGCTCTA Direct Loss 0.964322298178176 0 0.92584264 0 prediction 0.928644596356352 Functional Loss - LRRC8E ENSG00000171017 CDS Human protein_coding chr19:7965363 chr19:7965363 synonymous SNV . 0 21 hm5C_associated_SNPs_48050 0 0 0 0 0 chromatin 0.500231643346557 0 0.85168528 0.000463286693113352 hm5C_site_3370 DeepMRMD:0.85168528;iRNA_m5C:0.000463286693113352 3371 chr4 15780168 15780168 1 + C T COAD 15780168 + 15780148 15780188 41 GGTGCTCGCGGTGGTCGTCCCGAGGTGGCGCCAGCAGTGGA GGTGCTCGCGGTGGTCGTCCTGAGGTGGCGCCAGCAGTGGA Direct Loss 0.964320382250804 0 0.9014169 0 prediction 0.928640764501609 Functional Loss - CD38 ENSG00000004468 CDS Human protein_coding chr4:15780168 chr4:15780168 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48051 0 0 0 0 0 exosome 0.500231643971255 0 0.8028338 0.00046328794251016 hm5C_site_3371 DeepMRMD:0.8028338;iRNA_m5C:0.00046328794251016 3372 chr6 100061181 100061181 1 + C T COAD 100061181 + 100061161 100061201 41 CAGTTCAGGCCTGCGGTGCGCGGGAGGGCATCAAGCGCGAG CAGTTCAGGCCTGCGGTGCGTGGGAGGGCATCAAGCGCGAG Direct Loss 0.96431222216103 0 0.7313145 0 prediction 0.928624444322059 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100061181 chr6:100061181 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_48052 0 0 0 0 0 exosome 0.500231643945286 0 0.462629 0.000463287890571928 hm5C_site_3372 DeepMRMD:0.462629;iRNA_m5C:0.000463287890571928 3373 chr5 195111 195111 1 + C A BLCA 195111 + 195091 195131 41 CTGCGCCAGCTCAAGTTCCTCGGGAACCCGCTGTCGGCCCG CTGCGCCAGCTCAAGTTCCTAGGGAACCCGCTGTCGGCCCG Direct Loss 0.964311532956712 0 0.92143965 0 prediction 0.928623065913424 Functional Loss - LRRC14B ENSG00000185028 CDS Human protein_coding chr5:195111 chr5:195111 synonymous SNV . 0 21 hm5C_associated_SNPs_48053 0 0 0 0 0 exosome 0.500231643828396 0 0.8428793 0.000463287656791156 hm5C_site_3373 DeepMRMD:0.8428793;iRNA_m5C:0.000463287656791156 3374 chr2 10282461 10282461 1 + C T UCEC 10282461 + 10282441 10282481 41 TCTGCGTGTCAGGTGTTACTCGGGGTGCGCCAGTGGAAGCG TCTGCGTGTCAGGTGTTACTTGGGGTGCGCCAGTGGAAGCG Direct Loss 0.964311191076013 0 0.9469559 0 prediction 0.928622382152027 Functional Loss - C2orf48 ENSG00000163009 CDS Human lincRNA chr2:10282461 chr2:10282461 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_48054 0 0 1 0 2 unknown 0.500231643953038 0 0.8939118 0.000463287906075527 hm5C_site_3374 DeepMRMD:0.8939118;iRNA_m5C:0.000463287906075527 3375 chr1 20879540 20879540 1 + C T SKCM 20879540 + 20879520 20879560 41 CAAGGCGAAGAGCCTGAGTCCGGGGCTCGCCTACACGTCGC CAAGGCGAAGAGCCTGAGTCTGGGGCTCGCCTACACGTCGC Direct Loss 0.964310935993348 0 0.9253061 0 prediction 0.928621871986697 Functional Loss - FAM43B ENSG00000183114 CDS Human protein_coding chr1:20879540 chr1:20879540 nonsynonymous SNV 0.948 0 21 hm5C_associated_SNPs_48055 0 0 0 0 0 exosome 0.500231643921092 0 0.8506122 0.000463287842184856 hm5C_site_3375 DeepMRMD:0.8506122;iRNA_m5C:0.000463287842184856 3376 chr16 12061644 12061644 1 + C A LUSC 12061644 + 12061624 12061664 41 ACGAAAACGAATGACTATTGCAAGAGCCTGCCAGCTGCTTT ACGAAAACGAATGACTATTGAAAGAGCCTGCCAGCTGCTTT Direct Loss 0.964283829120123 0 0.35745782 0 prediction 0.928567658240246 Functional Loss - TNFRSF17 ENSG00000048462 CDS Human protein_coding chr16:12061644 chr16:12061644 stopgain 0.026 0 21 hm5C_associated_SNPs_48056 0 0 0 0 0 exosome 0.500240761803062 0 0 0.000481523606124634 hm5C_site_3376 DeepMRMD:0;iRNA_m5C:0.000481523606124634 3377 chr9 129455497 129455497 1 + C T COAD 129455497 + 129455477 129455517 41 AGCAAGGGCAGCGGGGATGACGGGAAGGACCCGCGGAGGCC AGCAAGGGCAGCGGGGATGATGGGAAGGACCCGCGGAGGCC Direct Loss 0.964247887131016 0 0.8632425 0 prediction 0.928495774262031 Functional Loss - LMX1B ENSG00000136944 CDS Human protein_coding chr9:129455497 chr9:129455497 synonymous SNV . 0 21 hm5C_associated_SNPs_48057 0 0 0 0 1 Endoplasmic reticulum 0.500231643921108 0 0.726485 0.000463287842215276 hm5C_site_3377 DeepMRMD:0.726485;iRNA_m5C:0.000463287842215276 3378 chr5 140019433 140019433 1 + C A rs558148339 140019433 + 140019413 140019453 41 GCTGCGATCCTCGGGGAAACCGAGGTGAGGGGGCAAGGTAG GCTGCGATCCTCGGGGAAACAGAGGTGAGGGGGCAAGGTAG Direct Loss 0.964220610597229 0 0.91104186 0 prediction 0.928441221194457 Functional Loss - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140019433 chr5:140019433 synonymous SNV . 0 21 hm5C_associated_SNPs_48058 0 0 1 0 1 chromatin 0.500231643921094 0 0.82208372 0.000463287842187521 hm5C_site_3378 DeepMRMD:0.82208372;iRNA_m5C:0.000463287842187521 3379 chr8 8560258 8560258 1 + C T GBM 8560258 + 8560238 8560278 41 CTTCGTGCTGGCAGGGCTCTCGGGCGTCGTGCTCTTCGTCG CTTCGTGCTGGCAGGGCTCTTGGGCGTCGTGCTCTTCGTCG Direct Loss 0.964210887850694 0 0.940255 0 prediction 0.928421775701388 Functional Loss - CLDN23 ENSG00000253958 CDS Human protein_coding chr8:8560258 chr8:8560258 nonsynonymous SNV 0.007 2 21 hm5C_associated_SNPs_48059 0 0 0 0 0 Endoplasmic reticulum 0.500231642707022 0 0.88051 0.000463285414044945 hm5C_site_3379 DeepMRMD:0.88051;iRNA_m5C:0.000463285414044945 3380 chr16 67916623 67916623 1 + C T COAD 67916623 + 67916603 67916643 41 ACATGAAGAGCCGGAAGGCACGGGAACAGGAGGCCAGGGAG ACATGAAGAGCCGGAAGGCATGGGAACAGGAGGCCAGGGAG Direct Loss 0.964207532268031 0 0.89348125 0 prediction 0.928415064536062 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67916623 chr16:67916623 nonsynonymous SNV 0.961 3 21 hm5C_associated_SNPs_48060 0 0 1 1 1 Cytosol 0.500231643921092 0 0.7869625 0.000463287842184856 hm5C_site_3380 DeepMRMD:0.7869625;iRNA_m5C:0.000463287842184856 3381 chrX 56590349 56590349 1 + C T UCEC 56590349 + 56590329 56590369 41 GCGGCCCCCCGCGCCCCTCCCGCGGCCCTGCTGCGGCCCAA GCGGCCCCCCGCGCCCCTCCTGCGGCCCTGCTGCGGCCCAA Direct Loss 0.964190773063116 0 0.89382243 0 prediction 0.928381546126232 Functional Loss - UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56590349 chrX:56590349 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_48061 0 0 1 0 0 nucleus 0.500231643717911 0 0.78764486 0.000463287435822579 hm5C_site_3381 DeepMRMD:0.78764486;iRNA_m5C:0.000463287435822579 3382 chr6 26463541 26463541 1 + C G BRCA 26463541 + 26463521 26463561 41 CATCCGGCTGGAGTGCATATCTAGAGGGTGGTACCCAAAGC CATCCGGCTGGAGTGCATATGTAGAGGGTGGTACCCAAAGC Direct Loss 0.964190408529441 0 0.4486128 0 prediction 0.928380817058882 Functional Loss - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26463541 chr6:26463541 nonsynonymous SNV 0.379 5 21 hm5C_associated_SNPs_48062 0 0 1 0 1 Endoplasmic reticulum 0.500230227991196 0 0 0.000460455982392416 hm5C_site_3382 DeepMRMD:0;iRNA_m5C:0.000460455982392416 3383 chr19 17450401 17450401 1 + C T BRCA 17450401 + 17450381 17450421 41 AGGAGGGCGTGCGGCGCGCCCGGGAGAGGTGGGCGGACAGG AGGAGGGCGTGCGGCGCGCCTGGGAGAGGTGGGCGGACAGG Direct Loss 0.964128375539475 0 0.90899897 0 prediction 0.928256751078949 Functional Loss - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450401 chr19:17450401 nonsynonymous SNV 0.047 1 21 hm5C_associated_SNPs_48063 0 0 1 0 0 Ribosome 0.500231636049011 0 0.81799794 0.000463272098021328 hm5C_site_3383 DeepMRMD:0.81799794;iRNA_m5C:0.000463272098021328 3384 chr1 227923081 227923081 1 + G A READ 227923081 - 227923061 227923101 41 CCCGGAGCCCCAGGCGCTGGCGGGGCAGAAACGCGGCGCCC CCCGGAGCCCCAGGCGCTGGTGGGGCAGAAACGCGGCGCCC Direct Loss 0.964079230675592 0 0.96112674 0 prediction 0.928158461351184 Functional Loss - JMJD4 ENSG00000081692 CDS Human protein_coding chr1:227923081 chr1:227923081 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48064 0 0 0 0 0 Ribosome 0.500231643921092 0 0.92225348 0.000463287842184856 hm5C_site_3384 DeepMRMD:0.92225348;iRNA_m5C:0.000463287842184856 3385 chr17 33482447 33482447 1 + C T COAD 33482447 + 33482427 33482467 41 CCTTGTCTGGGGAGGACAAGCGGGAGCATCGAGGGAAGGAG CCTTGTCTGGGGAGGACAAGTGGGAGCATCGAGGGAAGGAG Direct Loss 0.964064076969998 0 0.92631763 0 prediction 0.928128153939996 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33482447 chr17:33482447 nonsynonymous SNV 0.458 2 21 hm5C_associated_SNPs_48065 0 0 0 0 1 Nucleus 0.500231643921092 0 0.85263526 0.000463287842184856 hm5C_site_3385 DeepMRMD:0.85263526;iRNA_m5C:0.000463287842184856 3386 chr16 30012816 30012816 1 + C T COAD 30012816 + 30012796 30012836 41 CCAGTCCCCTGAGGCCCAAGCGGGAGAAACGGCCCCGCCTG CCAGTCCCCTGAGGCCCAAGTGGGAGAAACGGCCCCGCCTG Direct Loss 0.964063323937881 0 0.9578383 0 prediction 0.928126647875762 Functional Loss - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012816 chr16:30012816 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48066 0 0 1 0 2 Cytosol 0.500231643787921 0 0.9156766 0.000463287575842131 hm5C_site_3386 DeepMRMD:0.9156766;iRNA_m5C:0.000463287575842131 3387 chrX 130217839 130217839 1 + C T CESC 130217839 + 130217819 130217859 41 GTCAGGCTGCGGGCCGTCGTCGGGGAAACGTGGTGCGAAGG GTCAGGCTGCGGGCCGTCGTTGGGGAAACGTGGTGCGAAGG Direct Loss 0.964046781584313 0 0.92160875 0 prediction 0.928093563168626 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130217839 chrX:130217839 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_48067 0 0 0 0 0 unknown 0.500231643921092 0 0.8432175 0.000463287842184856 hm5C_site_3387 DeepMRMD:0.8432175;iRNA_m5C:0.000463287842184856 3388 chr1 205561360 205561360 1 + C T BLCA 205561360 + 205561340 205561380 41 GCAAGCCTGGGCCTGTTTCTCAGCAGCACCTTCCCCAGCAT GCAAGCCTGGGCCTGTTTCTTAGCAGCACCTTCCCCAGCAT Direct Loss 0.964026473446559 0 0.90852034 0 prediction 0.928052946893118 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205561360 chr1:205561360 synonymous SNV . 0 21 hm5C_associated_SNPs_48068 0 0 0 2 2 Nucleus 0.500231643842613 0 0.81704068 0.00046328768522641 hm5C_site_3388 DeepMRMD:0.81704068;iRNA_m5C:0.00046328768522641 3389 chr19 52794904 52794904 1 + C T rs143035362 52794904 + 52794884 52794924 41 TGCCTGCAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA TGCCTGCAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA Direct Loss 0.964021041076158 0 0.9228524 0 prediction 0.928042082152317 Functional Loss - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52794904 chr19:52794904 . . 0 21 hm5C_associated_SNPs_48069 0 0 0 0 0 chromatin 0.500231643921092 0 0.8457048 0.000463287842184856 hm5C_site_3389 DeepMRMD:0.8457048;iRNA_m5C:0.000463287842184856 3390 chr7 31009493 31009493 1 + C T UCEC 31009493 + 31009473 31009513 41 GCCTCCCAGGGGCTGTGAAACGGGATTGTACTATCACTGGC GCCTCCCAGGGGCTGTGAAATGGGATTGTACTATCACTGGC Direct Loss 0.964020344443959 0 0.89462566 0 prediction 0.928040688887917 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31009493 chr7:31009493 nonsynonymous SNV 0.137 3 21 hm5C_associated_SNPs_48070 0 0 0 0 2 unknown 0.500231643921092 0 0.78925132 0.000463287842184856 hm5C_site_3390 DeepMRMD:0.78925132;iRNA_m5C:0.000463287842184856 3391 chrX 78010852 78010852 1 + C A UCEC 78010852 + 78010832 78010872 41 GCCATTGTGTGTGCTGGTGTCTGGATCCTAGTCCTCAGTGG GCCATTGTGTGTGCTGGTGTATGGATCCTAGTCCTCAGTGG Direct Loss 0.963995269792773 0 0.3987625 0 prediction 0.927990539585545 Functional Loss - LPAR4 ENSG00000147145 CDS Human protein_coding chrX:78010852 chrX:78010852 synonymous SNV . 0 21 hm5C_associated_SNPs_48071 0 0 0 0 0 exosome 0.50023142656925 0 0 0.000462853138499586 hm5C_site_3391 DeepMRMD:0;iRNA_m5C:0.000462853138499586 3392 chr16 27459912 27459912 1 + G T GBM 27459912 - 27459892 27459932 41 CTCCAGGGTGGAGGGCACCTCTGGGCTCCAGGGTCCCAGCT CTCCAGGGTGGAGGGCACCTATGGGCTCCAGGGTCCCAGCT Direct Loss 0.963990604653396 0 0.82805765 0 prediction 0.927981209306792 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27459912 chr16:27459912 stopgain 0.001 0 21 hm5C_associated_SNPs_48072 0 0 1 0 0 nucleus 0.500231643921092 0 0.6561153 0.000463287842184856 hm5C_site_3392 DeepMRMD:0.6561153;iRNA_m5C:0.000463287842184856 3393 chr12 4385287 4385287 1 + C G CESC 4385287 + 4385267 4385307 41 CTGCAACTCCTGGGTGCTGTCTGCATGTTCCTGGCCTCCAA CTGCAACTCCTGGGTGCTGTGTGCATGTTCCTGGCCTCCAA Direct Loss 0.963986072283189 0 0.5167302 0 prediction 0.927972144566379 Functional Loss - CCND2 ENSG00000118971 CDS Human protein_coding chr12:4385287 chr12:4385287 synonymous SNV . 0 21 hm5C_associated_SNPs_48073 0 0 0 0 1 Ribosome 0.500231643951141 0 0.0334604000000001 0.000463287902282117 hm5C_site_3393 DeepMRMD:0.0334604000000001;iRNA_m5C:0.000463287902282117 3394 chr11 1977613 1977613 1 + C T SKCM 1977613 + 1977593 1977633 41 GCAGAGGCAGAGCAGCGACCCGCGGCGGGGCGGCGTCCCCA GCAGAGGCAGAGCAGCGACCTGCGGCGGGGCGGCGTCCCCA Direct Loss 0.963981649049732 0 0.799291 0 prediction 0.927963298099465 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1977613 chr11:1977613 nonsynonymous SNV 0.036 0 21 hm5C_associated_SNPs_48074 0 0 1 0 0 Ribosome 0.500231643921092 0 0.598582 0.00046328784218419 hm5C_site_3394 DeepMRMD:0.598582;iRNA_m5C:0.00046328784218419 3395 chrX 76709692 76709692 1 + C T SKCM 76709692 + 76709672 76709712 41 CTGTGGGGCTGATCAGCATCCGGGGAGTGGACTCTGGCCTG CTGTGGGGCTGATCAGCATCTGGGGAGTGGACTCTGGCCTG Direct Loss 0.963980249098876 0 0.9337157 0 prediction 0.927960498197751 Functional Loss - FGF16 ENSG00000196468 CDS Human protein_coding chrX:76709692 chrX:76709692 unknown 0.994 1 21 hm5C_associated_SNPs_48075 0 0 0 0 1 exosome 0.500231643921092 0 0.8674314 0.000463287842184856 hm5C_site_3395 DeepMRMD:0.8674314;iRNA_m5C:0.000463287842184856 3396 chr11 607679 607679 1 + C A UCEC 607679 + 607659 607699 41 AGCAGGGTGCCCCGGGAGCCCGGGGTGCACACGGGCAGCTC AGCAGGGTGCCCCGGGAGCCAGGGGTGCACACGGGCAGCTC Direct Loss 0.963975072772452 0 0.9208334 0 prediction 0.927950145544903 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:607679 chr11:607679 synonymous SNV . 0 21 hm5C_associated_SNPs_48076 0 0 1 0 0 Nucleus 0.50023162638042 0 0.8416668 0.000463252760840582 hm5C_site_3396 DeepMRMD:0.8416668;iRNA_m5C:0.000463252760840582 3397 chr19 49102469 49102469 1 + C A rs61748775 49102469 + 49102449 49102489 41 GTGCCTACCGCAAGCAGATGCGGGGGATGCCGACCTTCCCC GTGCCTACCGCAAGCAGATGAGGGGGATGCCGACCTTCCCC Direct Loss 0.963970465275426 0 0.9527432 0 prediction 0.927940930550851 Functional Loss - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49102469 chr19:49102469 synonymous SNV . 0 21 hm5C_associated_SNPs_48077 0 0 0 0 1 exosome 0.500231643921093 0 0.9054864 0.000463287842185967 hm5C_site_3397 DeepMRMD:0.9054864;iRNA_m5C:0.000463287842185967 3398 chr2 176994728 176994728 1 + C A rs141068157 176994728 + 176994708 176994748 41 AGAGGAAACAGTGGAGGCAGCGGGGCAGGTCGCCTGGGGCG AGAGGAAACAGTGGAGGCAGAGGGGCAGGTCGCCTGGGGCG Direct Loss 0.963922463096632 0 0.9043616 0 prediction 0.927844926193264 Functional Loss - HOXD8 ENSG00000237380 ncRNA_intronic Human antisense chr2:176994728 chr2:176994728 . . 0 21 hm5C_associated_SNPs_48078 0 0 0 0 0 Cytosol 0.500231643921092 0 0.8087232 0.000463287842184856 hm5C_site_3398 DeepMRMD:0.8087232;iRNA_m5C:0.000463287842184856 3399 chr2 31489204 31489204 1 + C T COAD 31489204 + 31489184 31489224 41 ATGGTGAAGGGCGGAGCGTTCGAGGGCACCCTGCACGGCCC ATGGTGAAGGGCGGAGCGTTTGAGGGCACCCTGCACGGCCC Direct Loss 0.963912073863161 0 0.92934686 0 prediction 0.927824147726323 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489204 chr2:31489204 synonymous SNV . 0 21 hm5C_associated_SNPs_48079 0 0 0 0 0 exosome 0.500231643860491 0 0.85869372 0.000463287720982253 hm5C_site_3399 DeepMRMD:0.85869372;iRNA_m5C:0.000463287720982253 3400 chr10 45496299 45496299 1 + C A BLCA 45496299 + 45496279 45496319 41 ACAACGCTTTCGGGTGGGCCCGGGACCATAGAGGGTCGCTC ACAACGCTTTCGGGTGGGCCAGGGACCATAGAGGGTCGCTC Direct Loss 0.963903818799424 0 0.9146832 0 prediction 0.927807637598847 Functional Loss - C10orf25 ENSG00000165511 CDS Human antisense chr10:45496299 chr10:45496299 synonymous SNV . 0 21 hm5C_associated_SNPs_48080 0 0 0 0 0 unknown 0.500231643921092 0 0.8293664 0.000463287842184856 hm5C_site_3400 DeepMRMD:0.8293664;iRNA_m5C:0.000463287842184856 3401 chr21 47361602 47361602 1 + C T COAD 47361602 + 47361582 47361622 41 AGGCTGACGTCCGAGGTCACCGGGATGGGCACGCTGTAATC AGGCTGACGTCCGAGGTCACTGGGATGGGCACGCTGTAATC Direct Loss 0.963903404821407 0 0.92151725 0 prediction 0.927806809642814 Functional Loss - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47361602 chr21:47361602 synonymous SNV . 0 21 hm5C_associated_SNPs_48081 0 0 0 0 1 nucleoplasm 0.500231643982357 0 0.8430345 0.00046328796471351 hm5C_site_3401 DeepMRMD:0.8430345;iRNA_m5C:0.00046328796471351 3402 chr16 29828032 29828032 1 + C T STAD 29828032 + 29828012 29828052 41 GAGACCGAGCGTGAGGGGTCCGGGGGCGAGGAGGCGCAGGG GAGACCGAGCGTGAGGGGTCTGGGGGCGAGGAGGCGCAGGG Direct Loss 0.963835130776166 0 0.9052937 0 prediction 0.927670261552333 Functional Loss - PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828032 chr16:29828032 synonymous SNV . 0 21 hm5C_associated_SNPs_48082 0 0 1 0 0 Ribosome 0.500231643921243 0 0.8105874 0.000463287842485505 hm5C_site_3402 DeepMRMD:0.8105874;iRNA_m5C:0.000463287842485505 3403 chr4 78808420 78808420 1 + C T DLBC 78808420 + 78808400 78808440 41 AGAAAATGGAGCTGCATTTGCAGGAGGCACTAGTCTGATAC AGAAAATGGAGCTGCATTTGTAGGAGGCACTAGTCTGATAC Direct Loss 0.963830370849588 0 0.8764535 0 prediction 0.927660741699176 Functional Loss - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78808420 chr4:78808420 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_48083 0 0 1 0 2 Ribosome 0.500231643844055 0 0.752907 0.000463287688109881 hm5C_site_3403 DeepMRMD:0.752907;iRNA_m5C:0.000463287688109881 3404 chr19 45206715 45206715 1 + C T GBM 45206715 + 45206695 45206735 41 GCTGGTCGTCCATGGGCTTTCGGGGGAACTGCTCGCCTACA GCTGGTCGTCCATGGGCTTTTGGGGGAACTGCTCGCCTACA Direct Loss 0.963827454043201 0 0.9692088 0 prediction 0.927654908086402 Functional Loss - CEACAM16 ENSG00000213892 CDS Human protein_coding chr19:45206715 chr19:45206715 nonsynonymous SNV 0.637 0 21 hm5C_associated_SNPs_48084 0 0 0 0 1 exosome 0.500231118431346 0 0.9384176 0.000462236862692533 hm5C_site_3404 DeepMRMD:0.9384176;iRNA_m5C:0.000462236862692533 3405 chr9 133346226 133346226 1 + C T rs10901072 133346226 + 133346206 133346246 41 GTCTCTTTCCTGCAGCAACACGGGATTCCCATCCCGGTCAC GTCTCTTTCCTGCAGCAACATGGGATTCCCATCCCGGTCAC Direct Loss 0.963816161378662 0 0.88999665 0 prediction 0.927632322757325 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133346226 chr9:133346226 synonymous SNV . 0 21 hm5C_associated_SNPs_48085 2 0 1 0 2 Ribosome 0.500231643921092 0 0.7799933 0.000463287842184856 hm5C_site_3405 DeepMRMD:0.7799933;iRNA_m5C:0.000463287842184856 not specified not specified 3406 chr19 1274244 1274244 1 + C T rs142436314 1274244 + 1274224 1274264 41 GTGGCTGTTTCCGGGGAGGCCGGGAGGGGCAGCTGTGAGCC GTGGCTGTTTCCGGGGAGGCTGGGAGGGGCAGCTGTGAGCC Direct Loss 0.963811360269934 0 0.91886735 0 prediction 0.927622720539867 Functional Loss - CIRBP ENSG00000099622 UTR3 Human protein_coding chr19:1274244 chr19:1274244 . . 0 21 hm5C_associated_SNPs_48086 0 0 1 0 0 Ribosome 0.500231643859144 0 0.8377347 0.00046328771828863 hm5C_site_3406 DeepMRMD:0.8377347;iRNA_m5C:0.00046328771828863 3407 chr22 42967270 42967270 1 + C T rs147107302 42967270 + 42967250 42967290 41 ACATGGGCGCCAGGAATCTCCGGGAGGGGGCCCTGGCATGA ACATGGGCGCCAGGAATCTCTGGGAGGGGGCCCTGGCATGA Direct Loss 0.963800025352734 0 0.9186199 0 prediction 0.927600050705467 Functional Loss - SERHL2 ENSG00000182841 ncRNA_intronic Human transcribed_unprocessed_pseudogene chr22:42967270 chr22:42967270 . . 0 21 hm5C_associated_SNPs_48087 0 0 1 0 0 chromatin 0.500231643971605 0 0.8372398 0.000463287943209156 hm5C_site_3407 DeepMRMD:0.8372398;iRNA_m5C:0.000463287943209156 3408 chr14 24525547 24525547 1 + C T COAD 24525547 + 24525527 24525567 41 GCCGGGGTGTTTGGGGAGAACGGGAGCTGTGTGCTGCATGC GCCGGGGTGTTTGGGGAGAATGGGAGCTGTGTGCTGCATGC Direct Loss 0.96378855158823 0 0.91380215 0 prediction 0.92757710317646 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24525547 chr14:24525547 synonymous SNV . 0 21 hm5C_associated_SNPs_48088 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0 0.8276043 0.000463287842184856 hm5C_site_3408 DeepMRMD:0.8276043;iRNA_m5C:0.000463287842184856 3409 chr11 18159677 18159677 1 + C A THYM 18159677 + 18159657 18159697 41 AAGGTGGAGGGTGGCTTCCTCAGGAAACCCTGGAGCTGTCG AAGGTGGAGGGTGGCTTCCTAAGGAAACCCTGGAGCTGTCG Direct Loss 0.963779415733155 0 0.9058621 0 prediction 0.92755883146631 Functional Loss - MRGPRX3 ENSG00000179826 CDS Human protein_coding chr11:18159677 chr11:18159677 nonsynonymous SNV 0.004 1 21 hm5C_associated_SNPs_48089 0 0 0 0 0 exosome 0.500231643921092 0 0.8117242 0.000463287842184856 hm5C_site_3409 DeepMRMD:0.8117242;iRNA_m5C:0.000463287842184856 3410 chr17 4701595 4701595 1 + C T UCEC 4701595 + 4701575 4701615 41 CTCTCGCTTTGGCCATGGAGCGGGATGGCTCCAGTGGAGGA CTCTCGCTTTGGCCATGGAGTGGGATGGCTCCAGTGGAGGA Direct Loss 0.963777676845898 0 0.8924098 0 prediction 0.927555353691796 Functional Loss - PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701595 chr17:4701595 nonsynonymous SNV 0.992 3 21 hm5C_associated_SNPs_48090 0 0 1 0 2 Ribosome 0.500231643921089 0 0.7848196 0.000463287842178195 hm5C_site_3410 DeepMRMD:0.7848196;iRNA_m5C:0.000463287842178195 3411 chr1 99470051 99470051 1 + G A COAD 99470051 - 99470031 99470071 41 CCCTACCCGGGCCCGGAGGACAGCAGCGCCGTGCCCCCCGT CCCTACCCGGGCCCGGAGGATAGCAGCGCCGTGCCCCCCGT Direct Loss 0.963730385542055 0 0.82906103 0 prediction 0.92746077108411 Functional Loss - PLPPR5 ENSG00000117598 CDS Human protein_coding chr1:99470051 chr1:99470051 synonymous SNV . 0 21 hm5C_associated_SNPs_48091 0 0 0 0 1 unknown 0.500231643921092 0 0.65812206 0.000463287842184856 hm5C_site_3411 DeepMRMD:0.65812206;iRNA_m5C:0.000463287842184856 3412 chr17 4927255 4927255 1 + C T SKCM 4927255 + 4927235 4927275 41 TGGATGGAGGGGGCCGATCCCGGGGAGCGGGTTCTGCACAG TGGATGGAGGGGGCCGATCCTGGGGAGCGGGTTCTGCACAG Direct Loss 0.963721214698796 0 0.94984996 0 prediction 0.927442429397592 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4927255 chr17:4927255 nonsynonymous SNV 0.929 2 21 hm5C_associated_SNPs_48092 0 0 1 0 0 Ribosome 0.500231643921091 0 0.89969992 0.000463287842182192 hm5C_site_3412 DeepMRMD:0.89969992;iRNA_m5C:0.000463287842182192 3413 chr19 36038288 36038288 1 + C T PRAD 36038288 + 36038268 36038308 41 ACTGGCCCGAGCAGTGGTAACGGGGCTGCTGGCCCTCAGCA ACTGGCCCGAGCAGTGGTAATGGGGCTGCTGGCCCTCAGCA Direct Loss 0.963706837598271 0 0.93211854 0 prediction 0.927413675196542 Functional Loss - TMEM147 ENSG00000105677 CDS Human protein_coding chr19:36038288 chr19:36038288 nonsynonymous SNV 0.883 4 21 hm5C_associated_SNPs_48093 0 0 1 0 1 Endoplasmic reticulum 0.500231643921021 0 0.86423708 0.00046328784204186 hm5C_site_3413 DeepMRMD:0.86423708;iRNA_m5C:0.00046328784204186 3414 chr9 100174394 100174394 1 + C G rs10982012 100174394 + 100174374 100174414 41 GCTTGAGGTGATTCCCAAGCCGCGGGGCGGCTCCGGTGGTG GCTTGAGGTGATTCCCAAGCGGCGGGGCGGCTCCGGTGGTG Direct Loss 0.963683117855502 0 0.8726951 0 prediction 0.927366235711004 Functional Loss - TDRD7 ENSG00000196116 UTR5 Human protein_coding chr9:100174394 chr9:100174394 . . 0 21 hm5C_associated_SNPs_48094 1 0 0 0 0 Ribosome 0.500231115933698 0 0.7453902 0.000462231867395024 hm5C_site_3414 DeepMRMD:0.7453902;iRNA_m5C:0.000462231867395024 Congenital cataract Congenital cataract 3415 chr12 57998636 57998636 1 + C T rs542850386 57998636 + 57998616 57998656 41 ACCGGCAATGGCGGCGCTGACGAGAGGTAGGTGAGCCCGGC ACCGGCAATGGCGGCGCTGATGAGAGGTAGGTGAGCCCGGC Direct Loss 0.963671979390417 0 0.9067304 0 prediction 0.927343958780835 Functional Loss - DTX3 ENSG00000178498 UTR5 Human protein_coding chr12:57998636 chr12:57998636 . . 0 21 hm5C_associated_SNPs_48095 0 0 1 0 1 exosome 0.500231643934091 0 0.8134608 0.000463287868182949 hm5C_site_3415 DeepMRMD:0.8134608;iRNA_m5C:0.000463287868182949 3416 chr10 54074296 54074296 1 + C T UCEC 54074296 + 54074276 54074316 41 GGAGTGAGCGCCACCTTGAACTCGGTTCTCAATTCCAACGC GGAGTGAGCGCCACCTTGAATTCGGTTCTCAATTCCAACGC Direct Loss 0.963651147821434 0 0.16203657 0 prediction 0.927302295642869 Functional Loss - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074296 chr10:54074296 synonymous SNV . 0 21 hm5C_associated_SNPs_48096 0 0 1 0 0 exosome 0.500231643921097 0 0 0.000463287842193516 hm5C_site_3416 DeepMRMD:0;iRNA_m5C:0.000463287842193516 3417 chr1 36396889 36396889 1 + C T rs540604358 36396889 + 36396869 36396909 41 GCTTTCGGAGTGCGGTTGCTCAGGGGAAGCCGTCGCCGCCC GCTTTCGGAGTGCGGTTGCTTAGGGGAAGCCGTCGCCGCCC Direct Loss 0.963647588514866 0 0.9619298 0 prediction 0.927295177029732 Functional Loss - AGO3 ENSG00000126070 UTR5 Human protein_coding chr1:36396889 chr1:36396889 . . 0 21 hm5C_associated_SNPs_48097 0 0 1 0 1 Nucleus 0.500231643921092 0 0.9238596 0.000463287842184856 hm5C_site_3417 DeepMRMD:0.9238596;iRNA_m5C:0.000463287842184856 3418 chr20 43379293 43379293 1 + C T CESC 43379293 + 43379273 43379313 41 CCGCGCCCCCCGGGGGCGCCCGAGAGCCGTGGCCTCTGGCT CCGCGCCCCCCGGGGGCGCCTGAGAGCCGTGGCCTCTGGCT Direct Loss 0.963637264304012 0 0.94586027 0 prediction 0.927274528608024 Functional Loss - KCNK15 ENSG00000124249 CDS Human protein_coding chr20:43379293 chr20:43379293 synonymous SNV . 0 21 hm5C_associated_SNPs_48098 0 0 0 0 0 Nucleus 0.500231643921093 0 0.89172054 0.000463287842185078 hm5C_site_3418 DeepMRMD:0.89172054;iRNA_m5C:0.000463287842185078 3419 chr8 99440324 99440324 1 + C T UCEC 99440324 + 99440304 99440344 41 CACACGCTGCTGCGCTTCCCCGAGACGCGCCTGGGCCGCTT CACACGCTGCTGCGCTTCCCTGAGACGCGCCTGGGCCGCTT Direct Loss 0.963622031643524 0 0.90819013 0 prediction 0.927244063287047 Functional Loss - KCNS2 ENSG00000156486 CDS Human protein_coding chr8:99440324 chr8:99440324 synonymous SNV . 0 21 hm5C_associated_SNPs_48099 0 0 0 0 0 exosome 0.500231643922452 0 0.81638026 0.000463287844904459 hm5C_site_3419 DeepMRMD:0.81638026;iRNA_m5C:0.000463287844904459 3420 chr20 61870912 61870912 1 + C T SKCM 61870912 + 61870892 61870932 41 GGCCTGCAGCTGTGCCCCATCTGCAGAGCCCCCGTCCGCAG GGCCTGCAGCTGTGCCCCATTTGCAGAGCCCCCGTCCGCAG Direct Loss 0.963605420023297 0 0.22128236 0 prediction 0.927210840046593 Functional Loss - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61870912 chr20:61870912 synonymous SNV . 0 21 hm5C_associated_SNPs_48100 0 0 1 0 1 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3420 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3421 chr3 183887875 183887875 1 + C T COAD 183887875 + 183887855 183887895 41 ACTGGCCCCTTTGCCGCACCCGGGGGCCGCCCCTTGGCCCA ACTGGCCCCTTTGCCGCACCTGGGGGCCGCCCCTTGGCCCA Direct Loss 0.96360153682201 0 0.95906967 0 prediction 0.92720307364402 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183887875 chr3:183887875 nonsynonymous SNV 0.934 4 21 hm5C_associated_SNPs_48101 0 0 1 0 1 Cytosol 0.500231643921092 0 0.91813934 0.000463287842184856 hm5C_site_3421 DeepMRMD:0.91813934;iRNA_m5C:0.000463287842184856 3422 chr10 102822540 102822540 1 + C T BLCA 102822540 + 102822520 102822560 41 GCCAGAAGAGTGCGCCGCGCCGCGGGGCTGCCTGGCGGGCA GCCAGAAGAGTGCGCCGCGCTGCGGGGCTGCCTGGCGGGCA Direct Loss 0.963598022649974 0 0.8574426 0 prediction 0.927196045299947 Functional Loss - KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822540 chr10:102822540 nonsynonymous SNV 0.977 1 21 hm5C_associated_SNPs_48102 0 0 1 0 0 nucleus 0.500231643921092 0 0.7148852 0.000463287842184856 hm5C_site_3422 DeepMRMD:0.7148852;iRNA_m5C:0.000463287842184856 3423 chr10 13214675 13214675 1 + C T SKCM 13214675 + 13214655 13214695 41 AGAGGAGAGTTCAGAGAATTCAGGAGTCAACATGCTTTTCT AGAGGAGAGTTCAGAGAATTTAGGAGTCAACATGCTTTTCT Direct Loss 0.963596696464195 0 0.8880956 0 prediction 0.927193392928389 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214675 chr10:13214675 stopgain 0.970 0 21 hm5C_associated_SNPs_48103 0 0 1 0 3 Nucleus 0.500231643921102 0 0.7761912 0.00046328784220373 hm5C_site_3423 DeepMRMD:0.7761912;iRNA_m5C:0.00046328784220373 3424 chr11 70049728 70049728 1 + C A CESC 70049728 + 70049708 70049748 41 TGCTGCTGGAGCAGAACGACCTGGAGCCCGGGCACACCGAG TGCTGCTGGAGCAGAACGACATGGAGCCCGGGCACACCGAG Direct Loss 0.963594340274216 0 0.19338399 0 prediction 0.927188680548433 Functional Loss - FADD ENSG00000168040 CDS Human protein_coding chr11:70049728 chr11:70049728 nonsynonymous SNV 0.966 4 21 hm5C_associated_SNPs_48104 0 0 1 0 0 Ribosome 0.500231908396073 0 0 0.000463816792145133 hm5C_site_3424 DeepMRMD:0;iRNA_m5C:0.000463816792145133 3425 chr12 55714515 55714515 1 + C A LUSC 55714515 + 55714495 55714535 41 ACTGGGAACCTGACCCTTATCACAATTACCCTGCTGGATTC ACTGGGAACCTGACCCTTATAACAATTACCCTGCTGGATTC Direct Loss 0.963592494372419 0 0.15880051 0 prediction 0.927184988744838 Functional Loss - OR6C1 ENSG00000205330 CDS Human protein_coding chr12:55714515 chr12:55714515 synonymous SNV . 0 21 hm5C_associated_SNPs_48105 0 0 0 0 0 unknown 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3425 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3426 chr7 66703660 66703660 1 + C T rs558475858 66703660 + 66703640 66703680 41 AGGCAGTAAACATGGAGACACGGGGGACAGCGTCCACACTC AGGCAGTAAACATGGAGACATGGGGGACAGCGTCCACACTC Direct Loss 0.963584091194192 0 0.910689 0 prediction 0.927168182388385 Functional Loss - TYW1 ENSG00000198874 UTR3 Human protein_coding chr7:66703660 chr7:66703660 . . 0 21 hm5C_associated_SNPs_48106 0 0 0 0 0 Endoplasmic reticulum 0.500231643921251 0 0.821378 0.00046328784250127 hm5C_site_3426 DeepMRMD:0.821378;iRNA_m5C:0.00046328784250127 3427 chr5 177022271 177022271 1 + C T PRAD 177022271 + 177022251 177022291 41 CTTATATTCCCCTGCAGTGGCGAGAGGAGCGCTTCCGGCAG CTTATATTCCCCTGCAGTGGTGAGAGGAGCGCTTCCGGCAG Direct Loss 0.963577385374666 0 0.86600363 0 prediction 0.927154770749333 Functional Loss - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177022271 chr5:177022271 stopgain 1.000 1 21 hm5C_associated_SNPs_48107 0 0 1 0 1 Ribosome 0.500231643921092 0 0.73200726 0.000463287842184856 hm5C_site_3427 DeepMRMD:0.73200726;iRNA_m5C:0.000463287842184856 3428 chr20 43160617 43160617 1 + C A rs73611738 43160617 + 43160597 43160637 41 ACGGAGAGGCGGCGAGACCGCAGGTGAGCAGGAGCCGGGCG ACGGAGAGGCGGCGAGACCGAAGGTGAGCAGGAGCCGGGCG Direct Loss 0.963557435044371 0 0.86551845 0 prediction 0.927114870088741 Functional Loss - PKIG ENSG00000168734 UTR5 Human protein_coding chr20:43160617 chr20:43160617 . . 0 21 hm5C_associated_SNPs_48108 0 0 1 0 1 Ribosome 0.500231638096056 0 0.7310369 0.000463276192111506 hm5C_site_3428 DeepMRMD:0.7310369;iRNA_m5C:0.000463276192111506 3429 chr12 132425944 132425944 1 + C G HNSC 132425944 + 132425924 132425964 41 CGCACAAGGACCGGGACGTTCAGGATGAGACCTACCGCCTG CGCACAAGGACCGGGACGTTGAGGATGAGACCTACCGCCTG Direct Loss 0.963554055176671 0 0.9330288 0 prediction 0.927108110353342 Functional Loss - PUS1 ENSG00000177192 CDS Human protein_coding chr12:132425944 chr12:132425944 nonsynonymous SNV 0.254 0 21 hm5C_associated_SNPs_48109 0 0 1 0 0 Cytosol 0.500231643918189 0 0.8660576 0.000463287836377502 hm5C_site_3429 DeepMRMD:0.8660576;iRNA_m5C:0.000463287836377502 3430 chr11 7535114 7535114 1 + C T rs117105713 7535114 + 7535094 7535134 41 GTGGTCCCTGTGGCAGGTCCCGGGGTGGGGGCGCGGCGCTC GTGGTCCCTGTGGCAGGTCCTGGGGTGGGGGCGCGGCGCTC Direct Loss 0.963532364414789 0 0.9384825 0 prediction 0.927064728829577 Functional Loss - PPFIBP2 ENSG00000166387 UTR5 Human protein_coding chr11:7535114 chr11:7535114 . . 0 21 hm5C_associated_SNPs_48110 0 0 0 0 0 Cytosol 0.500231643920756 0 0.876965 0.000463287841511173 hm5C_site_3430 DeepMRMD:0.876965;iRNA_m5C:0.000463287841511173 3431 chr19 38881095 38881095 1 + C T rs370701407 38881095 + 38881075 38881115 41 CAGGGGCACTACGTCATCCACGGGGAACGCCTCCGGGACCA CAGGGGCACTACGTCATCCATGGGGAACGCCTCCGGGACCA Direct Loss 0.963519289336188 0 0.9198582 0 prediction 0.927038578672376 Functional Loss - SPRED3 ENSG00000188766 CDS Human protein_coding chr19:38881095 chr19:38881095 synonymous SNV . 0 21 hm5C_associated_SNPs_48111 0 0 0 0 1 chromatin 0.500231643920772 0 0.8397164 0.00046328784154448 hm5C_site_3431 DeepMRMD:0.8397164;iRNA_m5C:0.00046328784154448 3432 chr17 64873462 64873462 1 + C T STAD 64873462 + 64873442 64873482 41 TCCAGGAAGATGAGTGCCTGCGGGAGGAAGGCCCTGACCCT TCCAGGAAGATGAGTGCCTGTGGGAGGAAGGCCCTGACCCT Direct Loss 0.963516451928245 0 0.9105367 0 prediction 0.927032903856491 Functional Loss - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64873462 chr17:64873462 synonymous SNV . 0 21 hm5C_associated_SNPs_48112 0 0 0 0 0 unknown 0.500231643921092 0 0.8210734 0.000463287842184856 hm5C_site_3432 DeepMRMD:0.8210734;iRNA_m5C:0.000463287842184856 3433 chr9 131583051 131583051 1 + C A COAD 131583051 + 131583031 131583071 41 ACCAGAATGCCTGGAACAACCTGGAGAAATATAGCCGCAGC ACCAGAATGCCTGGAACAACATGGAGAAATATAGCCGCAGC Direct Loss 0.963481524562825 0 0.66779786 0 prediction 0.926963049125651 Functional Loss - ENDOG ENSG00000167136 CDS Human protein_coding chr9:131583051 chr9:131583051 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_48113 0 0 0 0 2 Cytosol 0.50023158179936 0 0.33559572 0.000463163598719118 hm5C_site_3433 DeepMRMD:0.33559572;iRNA_m5C:0.000463163598719118 3434 chr4 53728800 53728800 1 + C T CESC 53728800 + 53728780 53728820 41 ATCGCCGTGGTGGGCGCCAGCGGCGTGGGCAAGACCGGTGA ATCGCCGTGGTGGGCGCCAGTGGCGTGGGCAAGACCGGTGA Direct Loss 0.963476248553421 0 0.9044983 0 prediction 0.926952497106842 Functional Loss - RASL11B ENSG00000128045 CDS Human protein_coding chr4:53728800 chr4:53728800 synonymous SNV . 0 21 hm5C_associated_SNPs_48114 0 0 0 0 1 exosome 0.500229332836713 0 0.8089966 0.000458665673426228 hm5C_site_3434 DeepMRMD:0.8089966;iRNA_m5C:0.000458665673426228 3435 chr14 24607692 24607692 1 + C T BLCA 24607692 + 24607672 24607712 41 GCTTCCCACAGGGTGATTATCGGCAGCTGGTGCACGAGCTG GCTTCCCACAGGGTGATTATTGGCAGCTGGTGCACGAGCTG Direct Loss 0.963460889693382 0 0.92055404 0 prediction 0.926921779386763 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607692 chr14:24607692 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48115 0 0 1 0 1 Ribosome 0.500231643921391 0 0.84110808 0.000463287842781934 hm5C_site_3435 DeepMRMD:0.84110808;iRNA_m5C:0.000463287842781934 3436 chr9 132571891 132571891 1 + C G rs78173949 132571891 + 132571871 132571911 41 CCAGATGGGGTAGGAGACAGCTGGGAGGCTCCGCACGCCAG CCAGATGGGGTAGGAGACAGGTGGGAGGCTCCGCACGCCAG Direct Loss 0.963453192761062 0 0.88834083 0 prediction 0.926906385522124 Functional Loss - TOR1B ENSG00000136816 UTR3 Human protein_coding chr9:132571891 chr9:132571891 . . 0 21 hm5C_associated_SNPs_48116 0 0 1 0 0 Endoplasmic reticulum 0.500231643921193 0 0.77668166 0.000463287842386029 hm5C_site_3436 DeepMRMD:0.77668166;iRNA_m5C:0.000463287842386029 3437 chr1 28176693 28176693 1 + C T THCA 28176693 + 28176673 28176713 41 GCCTTCAGCGGAGGACTCTACGGGGGCCTGCCCCCCACACA GCCTTCAGCGGAGGACTCTATGGGGGCCTGCCCCCCACACA Direct Loss 0.963444495618368 0 0.9248425 0 prediction 0.926888991236735 Functional Loss - PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28176693 chr1:28176693 synonymous SNV . 0 21 hm5C_associated_SNPs_48117 0 0 1 0 1 Ribosome 0.500231643921083 0 0.849685 0.000463287842166649 hm5C_site_3437 DeepMRMD:0.849685;iRNA_m5C:0.000463287842166649 3438 chr21 31768792 31768792 1 + C A UCEC 31768792 + 31768772 31768812 41 GGTCCAGTGGCTTCAGATCCCTGGGTTATGGAGGCTGTGGC GGTCCAGTGGCTTCAGATCCATGGGTTATGGAGGCTGTGGC Direct Loss 0.963408893823012 0 0.74463135 0 prediction 0.926817787646024 Functional Loss - KRTAP13-1 ENSG00000198390 CDS Human protein_coding chr21:31768792 chr21:31768792 nonsynonymous SNV 0.429 2 21 hm5C_associated_SNPs_48118 0 0 0 0 0 unknown 0.50023164389569 0 0.4892627 0.000463287791380829 hm5C_site_3438 DeepMRMD:0.4892627;iRNA_m5C:0.000463287791380829 3439 chr6 41754370 41754370 1 + C A rs10947987 41754370 + 41754350 41754390 41 GGGACCCTGGCGAGGACTCTCGGCGGCGGCGGCGGCGCGCA GGGACCCTGGCGAGGACTCTAGGCGGCGGCGGCGGCGCGCA Direct Loss 0.963400872969236 0 0.93409264 0 prediction 0.926801745938473 Functional Loss - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41754370 chr6:41754370 stopgain 0.074 0 21 hm5C_associated_SNPs_48119 0 0 0 0 0 nucleolus 0.500231643624256 0 0.86818528 0.000463287248511524 hm5C_site_3439 DeepMRMD:0.86818528;iRNA_m5C:0.000463287248511524 3440 chr19 49259613 49259613 1 + C T GBM 49259613 + 49259593 49259633 41 TCCAGTCCTCTCCTGCAATTCGGGGGCCAAGTCCGGCAGCG TCCAGTCCTCTCCTGCAATTTGGGGGCCAAGTCCGGCAGCG Direct Loss 0.963397847161241 0 0.9533532 0 prediction 0.926795694322482 Functional Loss - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49259613 chr19:49259613 synonymous SNV . 0 21 hm5C_associated_SNPs_48120 0 0 0 0 0 unknown 0.500231643920906 0 0.9067064 0.000463287841811599 hm5C_site_3440 DeepMRMD:0.9067064;iRNA_m5C:0.000463287841811599 3441 chr20 31671642 31671642 1 + C T UCEC 31671642 + 31671622 31671662 41 GGTGTCCTGGGCGTGCTCGGCGAGGGTGGCATCCTCAGCAC GGTGTCCTGGGCGTGCTCGGTGAGGGTGGCATCCTCAGCAC Direct Loss 0.963397201205733 0 0.902794 0 prediction 0.926794402411467 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31671642 chr20:31671642 synonymous SNV . 0 21 hm5C_associated_SNPs_48121 0 0 0 0 1 exosome 0.500231643921092 0 0.805588 0.000463287842184856 hm5C_site_3441 DeepMRMD:0.805588;iRNA_m5C:0.000463287842184856 3442 chr6 159086557 159086557 1 + C T ACC 159086557 + 159086537 159086577 41 TGCACCGGGGCGCCGTGTGCCGGGGCTGCAGCCACCGCGTG TGCACCGGGGCGCCGTGTGCTGGGGCTGCAGCCACCGCGTG Direct Loss 0.963377101494287 0 0.9149418 0 prediction 0.926754202988574 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086557 chr6:159086557 nonsynonymous SNV 0.945 2 21 hm5C_associated_SNPs_48122 0 0 0 0 1 exosome 0.500231643921098 0 0.8298836 0.000463287842196847 hm5C_site_3442 DeepMRMD:0.8298836;iRNA_m5C:0.000463287842196847 3443 chrX 16779131 16779131 1 + C T rs191579859 16779131 + 16779111 16779151 41 GGCCGAGGTGGGCAGATCACCGGAGGTCAGGAGTTCGAGAC GGCCGAGGTGGGCAGATCACTGGAGGTCAGGAGTTCGAGAC Direct Loss 0.963361037973123 0 0.9342295 0 prediction 0.926722075946247 Functional Loss - SYAP1 ENSG00000169895 UTR3 Human protein_coding chrX:16779131 chrX:16779131 . . 0 21 hm5C_associated_SNPs_48123 0 0 0 0 0 Ribosome 0.500231643921093 0 0.868459 0.0004632878421853 hm5C_site_3443 DeepMRMD:0.868459;iRNA_m5C:0.0004632878421853 3444 chr5 132083357 132083357 1 + C T rs182050188 132083357 + 132083337 132083377 41 AAGCAACCGGAGCAGGTGCCCTGGGACCCGCCAGCCCGGAG AAGCAACCGGAGCAGGTGCCTTGGGACCCGCCAGCCCGGAG Direct Loss 0.963352725775203 0 0.38703158 0 prediction 0.926705451550406 Functional Loss - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132083357 chr5:132083357 nonsynonymous SNV 0.015 1 21 hm5C_associated_SNPs_48124 0 0 0 0 0 nucleus 0.500231643921083 0 0 0.000463287842165538 hm5C_site_3444 DeepMRMD:0;iRNA_m5C:0.000463287842165538 3445 chr19 45515237 45515237 1 + C T COAD 45515237 + 45515217 45515257 41 GAGAACGGCTTCGGCCTGGACGGGGGACAGCCGGGCCCGGG GAGAACGGCTTCGGCCTGGATGGGGGACAGCCGGGCCCGGG Direct Loss 0.963333364266452 0 0.90330786 0 prediction 0.926666728532903 Functional Loss - RELB ENSG00000104856 CDS Human protein_coding chr19:45515237 chr19:45515237 synonymous SNV . 0 21 hm5C_associated_SNPs_48125 0 0 1 0 1 Cytosol 0.500231602926543 0 0.80661572 0.000463205853086013 hm5C_site_3445 DeepMRMD:0.80661572;iRNA_m5C:0.000463205853086013 3446 chr4 184931994 184931994 1 + C T SKCM 184931994 + 184931974 184932014 41 GGGTGGGGGCCCCGCTGCTTCGGGAGGAGTGGCTGAAGGGA GGGTGGGGGCCCCGCTGCTTTGGGAGGAGTGGCTGAAGGGA Direct Loss 0.963306368698826 0 0.93887734 0 prediction 0.926612737397653 Functional Loss - STOX2 ENSG00000173320 CDS Human protein_coding chr4:184931994 chr4:184931994 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_48126 0 0 0 0 0 exosome 0.500231643923562 0 0.87775468 0.000463287847124016 hm5C_site_3446 DeepMRMD:0.87775468;iRNA_m5C:0.000463287847124016 3447 chr7 100866997 100866997 1 + C T BLCA 100866997 + 100866977 100867017 41 TAACTACCTGACGGCCTGTGCGGGACCCCCATCGCGGCCCC TAACTACCTGACGGCCTGTGTGGGACCCCCATCGCGGCCCC Direct Loss 0.963281330407554 0 0.8811275 0 prediction 0.926562660815107 Functional Loss - ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100866997 chr7:100866997 nonsynonymous SNV 0.646 1 21 hm5C_associated_SNPs_48127 0 0 1 0 1 Cytosol 0.500231643813127 0 0.762255 0.000463287626254694 hm5C_site_3447 DeepMRMD:0.762255;iRNA_m5C:0.000463287626254694 3448 chr8 26240990 26240990 1 + C A rs535612138 26240990 + 26240970 26241010 41 GGCTCGCGGTCCGGGAGCGGCGCGGGTAGCGCGGATCCCCC GGCTCGCGGTCCGGGAGCGGAGCGGGTAGCGCGGATCCCCC Direct Loss 0.963278219033657 0 0.89022386 0 prediction 0.926556438067314 Functional Loss - BNIP3L ENSG00000104765 UTR5 Human protein_coding chr8:26240990 chr8:26240990 . . 0 21 hm5C_associated_SNPs_48128 0 0 0 0 1 Ribosome 0.500231622403536 0 0.78044772 0.000463244807071161 hm5C_site_3448 DeepMRMD:0.78044772;iRNA_m5C:0.000463244807071161 3449 chr15 49170685 49170685 1 + C A UCEC 49170685 + 49170665 49170705 41 GAGGGCGAGGAATTTGATGACTGGGAGGACGACTACGACTA GAGGGCGAGGAATTTGATGAATGGGAGGACGACTACGACTA Direct Loss 0.963270568409304 0 0.2806232 0 prediction 0.926541136818607 Functional Loss - EID1 ENSG00000255302 CDS Human protein_coding chr15:49170685 chr15:49170685 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48129 0 0 1 0 0 Ribosome 0.500231660456907 0 0 0.000463320913814735 hm5C_site_3449 DeepMRMD:0;iRNA_m5C:0.000463320913814735 3450 chr10 124909514 124909514 1 + C T UCEC 124909514 + 124909494 124909534 41 TGAGCATGCCGCTGGTGTTCCGGGACAGTTCGCTGCTGCGC TGAGCATGCCGCTGGTGTTCTGGGACAGTTCGCTGCTGCGC Direct Loss 0.9632687348863 0 0.9033452 0 prediction 0.9265374697726 Functional Loss - HMX2 ENSG00000188816 CDS Human protein_coding chr10:124909514 chr10:124909514 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_48130 0 0 0 0 0 exosome 0.500231599886712 0 0.8066904 0.000463199773423906 hm5C_site_3450 DeepMRMD:0.8066904;iRNA_m5C:0.000463199773423906 3451 chr3 20082033 20082033 1 + C T rs567728419 20082033 + 20082013 20082053 41 GAGCCGGGGCAGGGGCCGGGCCCGGGGCGCTGCCCCCGCAG GAGCCGGGGCAGGGGCCGGGTCCGGGGCGCTGCCCCCGCAG Direct Loss 0.96326687873351 0 0.9026995 0 prediction 0.926533757467021 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20082033 chr3:20082033 nonsynonymous SNV 0.040 0 21 hm5C_associated_SNPs_48131 0 0 0 0 0 Cytosol 0.500231643921106 0 0.805399 0.00046328784221239 hm5C_site_3451 DeepMRMD:0.805399;iRNA_m5C:0.00046328784221239 3452 chr17 37074968 37074968 1 + C T UCEC 37074968 + 37074948 37074988 41 ATCGACGACGGCTGGATGTACGGGACGGTGGAGCGCACCGG ATCGACGACGGCTGGATGTATGGGACGGTGGAGCGCACCGG Direct Loss 0.963257887410904 0 0.6352817 0 prediction 0.926515774821809 Functional Loss - LASP1 ENSG00000002834 CDS Human protein_coding chr17:37074968 chr17:37074968 synonymous SNV . 0 21 hm5C_associated_SNPs_48132 0 0 1 0 0 Cytosol 0.500207607593225 0 0.2705634 0.000415215186450713 hm5C_site_3452 DeepMRMD:0.2705634;iRNA_m5C:0.000415215186450713 3453 chr19 2878012 2878012 1 + C T UCEC 2878012 + 2877992 2878032 41 GGCAGCGTGGGAAAGTCTTCCGCGAGGCCTCGCCCCTCCAC GGCAGCGTGGGAAAGTCTTCTGCGAGGCCTCGCCCCTCCAC Direct Loss 0.963202604380858 0 0.8782742 0 prediction 0.926405208761715 Functional Loss - ZNF556 ENSG00000172000 CDS Human protein_coding chr19:2878012 chr19:2878012 synonymous SNV . 0 21 hm5C_associated_SNPs_48133 0 0 0 0 0 exosome 0.500231643921092 0 0.7565484 0.000463287842184856 hm5C_site_3453 DeepMRMD:0.7565484;iRNA_m5C:0.000463287842184856 3454 chr9 82187518 82187518 1 + C G rs367992343 82187518 + 82187498 82187538 41 ATGCGGAGCGGCCCGGCAGCCGGCACCCAGCCGCCGCCGCG ATGCGGAGCGGCCCGGCAGCGGGCACCCAGCCGCCGCCGCG Direct Loss 0.963201190057357 0 0.84570956 0 prediction 0.926402380114714 Functional Loss - TLE4 ENSG00000106829 UTR5 Human protein_coding chr9:82187518 chr9:82187518 . . 0 21 hm5C_associated_SNPs_48134 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.69141912 0.000463287842184856 hm5C_site_3454 DeepMRMD:0.69141912;iRNA_m5C:0.000463287842184856 3455 chr1 215256769 215256769 1 + C A COAD 215256769 + 215256749 215256789 41 GGAGAGACCCGGCTATAGAGCAGGAGGTGAGACCCCCCCTC GGAGAGACCCGGCTATAGAGAAGGAGGTGAGACCCCCCCTC Direct Loss 0.963198492516942 0 0.9177921 0 prediction 0.926396985033884 Functional Loss - KCNK2 ENSG00000082482 CDS Human protein_coding chr1:215256769 chr1:215256769 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_48135 0 0 0 0 1 exosome 0.500231643921092 0 0.8355842 0.000463287842184856 hm5C_site_3455 DeepMRMD:0.8355842;iRNA_m5C:0.000463287842184856 3456 chr17 46628473 46628473 1 + G A UCEC 46628473 - 46628453 46628493 41 GGCAGCGGGGGCGGTGGCGGCGGCGGCGGGGGAGGGGACAA GGCAGCGGGGGCGGTGGCGGTGGCGGCGGGGGAGGGGACAA Direct Loss 0.963193185443015 0 0.92899096 0 prediction 0.926386370886031 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628473 chr17:46628473 synonymous SNV . 0 21 hm5C_associated_SNPs_48136 0 0 1 0 1 Nucleus 0.500231643921092 0 0.85798192 0.000463287842184856 hm5C_site_3456 DeepMRMD:0.85798192;iRNA_m5C:0.000463287842184856 3457 chr11 22363206 22363206 1 + C T COAD 22363206 + 22363186 22363226 41 CTGCCCCGCCGCTACATTATCGCCATCATGAGCGGCCTGGG CTGCCCCGCCGCTACATTATTGCCATCATGAGCGGCCTGGG Direct Loss 0.963192538747763 0 0.25271773 0 prediction 0.926385077495525 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363206 chr11:22363206 synonymous SNV . 0 21 hm5C_associated_SNPs_48137 0 0 0 0 0 unknown 0.500231646681036 0 0 0.00046329336207207 hm5C_site_3457 DeepMRMD:0;iRNA_m5C:0.00046329336207207 3458 chr19 16296555 16296555 1 + C T CESC 16296555 + 16296535 16296575 41 ACCCCGGCCCAGGCGGCCTTCGAGAAAATGCAGGAGAAGCG ACCCCGGCCCAGGCGGCCTTTGAGAAAATGCAGGAGAAGCG Direct Loss 0.963184810862962 0 0.8249736 0 prediction 0.926369621725924 Functional Loss - FAM32A ENSG00000105058 CDS Human protein_coding chr19:16296555 chr19:16296555 synonymous SNV . 0 21 hm5C_associated_SNPs_48138 0 0 1 0 1 Ribosome 0.500231643921092 0 0.6499472 0.000463287842184856 hm5C_site_3458 DeepMRMD:0.6499472;iRNA_m5C:0.000463287842184856 3459 chr2 220100553 220100553 1 + C A rs150402081 220100553 + 220100533 220100573 41 AGGAGCAGGAGGAGCGTGAACGAGAAGAGCAGCGGCGATTT AGGAGCAGGAGGAGCGTGAAAGAGAAGAGCAGCGGCGATTT Direct Loss 0.963180579326849 0 0.8682332 0 prediction 0.926361158653698 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220100553 chr2:220100553 synonymous SNV . 0 21 hm5C_associated_SNPs_48139 0 0 1 0 1 chromatin 0.500231643933893 0 0.7364664 0.000463287867785711 hm5C_site_3459 DeepMRMD:0.7364664;iRNA_m5C:0.000463287867785711 3460 chr1 232941346 232941346 1 + C T UCEC 232941346 + 232941326 232941366 41 AGGGGGAGGCCTCGTCGCCGCGCGGTCTGTGCCCCGCCGTG AGGGGGAGGCCTCGTCGCCGTGCGGTCTGTGCCCCGCCGTG Direct Loss 0.963175723106945 0 0.88388205 0 prediction 0.926351446213889 Functional Loss - MAP10 ENSG00000212916 CDS Human protein_coding chr1:232941346 chr1:232941346 nonsynonymous SNV 0.013 1 21 hm5C_associated_SNPs_48140 0 0 0 0 0 exosome 0.500231643920979 0 0.7677641 0.000463287841957039 hm5C_site_3460 DeepMRMD:0.7677641;iRNA_m5C:0.000463287841957039 3461 chr1 149858692 149858692 1 + C G BLCA 149858692 + 149858672 149858712 41 GTCTACATGGCGGCGGTCCTCGAGTACCTGACCGCCGAGAT GTCTACATGGCGGCGGTCCTGGAGTACCTGACCGCCGAGAT Direct Loss 0.963170356427252 0 0.907712 0 prediction 0.926340712854504 Functional Loss - HIST2H2AC ENSG00000184260 CDS Human protein_coding chr1:149858692 chr1:149858692 synonymous SNV . 0 21 hm5C_associated_SNPs_48141 0 0 1 0 0 Ribosome 0.500231643525815 0 0.815424 0.000463287051630568 hm5C_site_3461 DeepMRMD:0.815424;iRNA_m5C:0.000463287051630568 3462 chr7 111846811 111846811 1 + C A LIHC 111846811 + 111846791 111846831 41 AGGGGGCTGTCGCCCGAATGCAGGAAGACCGTGATGGGAGC AGGGGGCTGTCGCCCGAATGAAGGAAGACCGTGATGGGAGC Direct Loss 0.963155490975416 0 0.69206 0 prediction 0.926310981950832 Functional Loss - ZNF277 ENSG00000198839 CDS Human protein_coding chr7:111846811 chr7:111846811 nonsynonymous SNV 0.009 0 21 hm5C_associated_SNPs_48142 0 0 1 0 1 chromatin 0.500231645533313 0 0.38412 0.000463291066625127 hm5C_site_3462 DeepMRMD:0.38412;iRNA_m5C:0.000463291066625127 3463 chr2 136499512 136499512 1 + C T LUSC 136499512 + 136499492 136499532 41 AGGGAGCGATGCTGTGGTTCCAGGGCGCCATTCCGGCCGCC AGGGAGCGATGCTGTGGTTCTAGGGCGCCATTCCGGCCGCC Direct Loss 0.963140312912855 0 0.9151069 0 prediction 0.926280625825709 Functional Loss - UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136499512 chr2:136499512 stopgain 0.998 0 21 hm5C_associated_SNPs_48143 0 0 1 0 1 Endoplasmic reticulum 0.500231643921094 0 0.8302138 0.000463287842188631 hm5C_site_3463 DeepMRMD:0.8302138;iRNA_m5C:0.000463287842188631 3464 chr10 73122283 73122283 1 + C T UCEC 73122283 + 73122263 73122303 41 CAGGGAGCTGGCTGAGGCCACGGGAGTGGTGATGTCCTTTT CAGGGAGCTGGCTGAGGCCATGGGAGTGGTGATGTCCTTTT Direct Loss 0.963131261272556 0 0.82356244 0 prediction 0.926262522545113 Functional Loss - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73122283 chr10:73122283 nonsynonymous SNV 0.670 4 21 hm5C_associated_SNPs_48144 0 0 1 1 0 chromatin 0.500231643920818 0 0.64712488 0.000463287841636184 hm5C_site_3464 DeepMRMD:0.64712488;iRNA_m5C:0.000463287841636184 3465 chr11 109294687 109294687 1 + C A LUSC 109294687 + 109294667 109294707 41 GGGATCACTGCAGCGGCAGCCGCGGTGGCGGGGGGCTGCCC GGGATCACTGCAGCGGCAGCAGCGGTGGCGGGGGGCTGCCC Direct Loss 0.963107317639274 0 0.90668607 0 prediction 0.926214635278549 Functional Loss - C11orf87 ENSG00000185742 CDS Human protein_coding chr11:109294687 chr11:109294687 nonsynonymous SNV 0.692 0 21 hm5C_associated_SNPs_48145 0 0 0 0 0 exosome 0.500231643921015 0 0.81337214 0.000463287842029425 hm5C_site_3465 DeepMRMD:0.81337214;iRNA_m5C:0.000463287842029425 3466 chr12 103352446 103352446 1 + C T COAD 103352446 + 103352426 103352466 41 ACCTGGGCTTTGCCACCCTTCGGGAGCACGTCCCCAACGGC ACCTGGGCTTTGCCACCCTTTGGGAGCACGTCCCCAACGGC Direct Loss 0.963092280326577 0 0.9263491 0 prediction 0.926184560653155 Functional Loss - ASCL1 ENSG00000139352 CDS Human protein_coding chr12:103352446 chr12:103352446 nonsynonymous SNV 0.964 4 21 hm5C_associated_SNPs_48146 0 0 0 0 0 Cytosol 0.500231643921092 0 0.8526982 0.000463287842184856 hm5C_site_3466 DeepMRMD:0.8526982;iRNA_m5C:0.000463287842184856 3467 chr8 54792045 54792045 1 + C A rs61754068 54792045 + 54792025 54792065 41 GGCCGCCTCTCGCTCCTGCTCGGGGCGGCGCTGGCACTGCC GGCCGCCTCTCGCTCCTGCTAGGGGCGGCGCTGGCACTGCC Direct Loss 0.963088018183553 0 0.96788466 0 prediction 0.926176036367105 Functional Loss - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54792045 chr8:54792045 synonymous SNV . 0 21 hm5C_associated_SNPs_48147 0 0 0 0 0 chromatin 0.500231647151538 0 0.93576932 0.000463294303076678 hm5C_site_3467 DeepMRMD:0.93576932;iRNA_m5C:0.000463294303076678 3468 chr12 110152337 110152337 1 + C G rs191257919 110152337 + 110152317 110152357 41 GCGCGGGCGGAGAGGGCGCCCTGGGAGCGGCGCGGGCCGAG GCGCGGGCGGAGAGGGCGCCGTGGGAGCGGCGCGGGCCGAG Direct Loss 0.963069042632787 0 0.9052832 0 prediction 0.926138085265574 Functional Loss - FAM222A ENSG00000139438 UTR5 Human protein_coding chr12:110152337 chr12:110152337 . . 0 21 hm5C_associated_SNPs_48148 0 0 1 0 0 exosome 0.500231643921092 0 0.8105664 0.000463287842184856 hm5C_site_3468 DeepMRMD:0.8105664;iRNA_m5C:0.000463287842184856 3469 chr17 16335395 16335395 1 + C A CESC 16335395 + 16335375 16335415 41 GAGGGCAACGGGGCCCAGTACAGGGGTATCCTGGAAGCCTC GAGGGCAACGGGGCCCAGTAAAGGGGTATCCTGGAAGCCTC Direct Loss 0.96305763612803 0 0.91717565 0 prediction 0.926115272256061 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16335395 chr17:16335395 stopgain 0.000 1 21 hm5C_associated_SNPs_48149 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8343513 0.000463287842184856 hm5C_site_3469 DeepMRMD:0.8343513;iRNA_m5C:0.000463287842184856 3470 chr1 89990533 89990533 1 + C A rs116042160 89990533 + 89990513 89990553 41 CCTGCCCGCCCGGAGCGGCCCAGGAGCACGCCGCGGGGAGC CCTGCCCGCCCGGAGCGGCCAAGGAGCACGCCGCGGGGAGC Direct Loss 0.963043580170405 0 0.9087002 0 prediction 0.926087160340811 Functional Loss - LRRC8B ENSG00000197147 UTR5 Human protein_coding chr1:89990533 chr1:89990533 . . 0 21 hm5C_associated_SNPs_48150 0 0 1 0 1 Endoplasmic reticulum 0.50023164392109 0 0.8174004 0.000463287842179971 hm5C_site_3470 DeepMRMD:0.8174004;iRNA_m5C:0.000463287842179971 3471 chr19 48967632 48967632 1 + C T UCEC 48967632 + 48967612 48967652 41 TTTGAGCTGGTGGTCATTCTCGAGGGGATGGTTGAGGCCAC TTTGAGCTGGTGGTCATTCTTGAGGGGATGGTTGAGGCCAC Direct Loss 0.963034952688812 0 0.964314 0 prediction 0.926069905377623 Functional Loss - KCNJ14 ENSG00000182324 CDS Human protein_coding chr19:48967632 chr19:48967632 synonymous SNV . 0 21 hm5C_associated_SNPs_48151 0 0 1 0 0 chromatin 0.500231643921092 0 0.928628 0.000463287842184856 hm5C_site_3471 DeepMRMD:0.928628;iRNA_m5C:0.000463287842184856 3472 chr11 47282934 47282934 1 + C T SKCM 47282934 + 47282914 47282954 41 CCGGAACAACTGGGCATGATCGAGAAGCTCGTCGCTGCCCA CCGGAACAACTGGGCATGATTGAGAAGCTCGTCGCTGCCCA Direct Loss 0.963017317038346 0 0.90020525 0 prediction 0.926034634076692 Functional Loss - NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47282934 chr11:47282934 synonymous SNV . 0 21 hm5C_associated_SNPs_48152 0 0 0 0 1 Ribosome 0.50023164882049 0 0.8004105 0.000463297640979077 hm5C_site_3472 DeepMRMD:0.8004105;iRNA_m5C:0.000463297640979077 3473 chr9 140137978 140137978 1 + C T SKCM 140137978 + 140137958 140137998 41 GCCGAGGAGGAGGGCGAGTTCGAGGAGGAGGCTGAGGAGGA GCCGAGGAGGAGGGCGAGTTTGAGGAGGAGGCTGAGGAGGA Direct Loss 0.962993636948487 0 0.8967469 0 prediction 0.925987273896975 Functional Loss - TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140137978 chr9:140137978 synonymous SNV . 0 21 hm5C_associated_SNPs_48153 0 0 1 0 0 Cytosol 0.500231643921092 0 0.7934938 0.000463287842184856 hm5C_site_3473 DeepMRMD:0.7934938;iRNA_m5C:0.000463287842184856 3474 chr7 142983078 142983078 1 + C A LUSC 142983078 + 142983058 142983098 41 CAATGCACTTACTGGGGAGACTGGAGAAGCCGCTTCTCCTC CAATGCACTTACTGGGGAGAATGGAGAAGCCGCTTCTCCTC Direct Loss 0.962978181847924 0 0.7951233 0 prediction 0.925956363695848 Functional Loss - TMEM139 ENSG00000178826 CDS Human protein_coding chr7:142983078 chr7:142983078 nonsynonymous SNV 0.895 3 21 hm5C_associated_SNPs_48154 0 0 0 0 1 Ribosome 0.500231643918956 0 0.5902466 0.000463287837912718 hm5C_site_3474 DeepMRMD:0.5902466;iRNA_m5C:0.000463287837912718 3475 chr1 17607199 17607199 1 + C T rs140482516 17607199 + 17607179 17607219 41 GGAACCGTGAGGTGCTGAAGCGGGAGCTGGGCCTGGCAGAG GGAACCGTGAGGTGCTGAAGTGGGAGCTGGGCCTGGCAGAG Direct Loss 0.962977940163812 0 0.8960041 0 prediction 0.925955880327625 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17607199 chr1:17607199 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48155 0 0 0 0 2 unknown 0.500231643921092 0 0.7920082 0.000463287842184856 hm5C_site_3475 DeepMRMD:0.7920082;iRNA_m5C:0.000463287842184856 3476 chr19 16060264 16060264 1 + C T SKCM 16060264 + 16060244 16060284 41 GCCCATCTTGTGGCCTGTACCTGGGCTGGTGGCTCAGTCAT GCCCATCTTGTGGCCTGTACTTGGGCTGGTGGCTCAGTCAT Direct Loss 0.962970267176705 0 0.901013 0 prediction 0.92594053435341 Functional Loss - OR10H4 ENSG00000176231 CDS Human protein_coding chr19:16060264 chr19:16060264 synonymous SNV . 0 21 hm5C_associated_SNPs_48156 0 0 0 0 0 unknown 0.50023165817529 0 0.802026 0.000463316350579612 hm5C_site_3476 DeepMRMD:0.802026;iRNA_m5C:0.000463316350579612 3477 chr16 1129641 1129641 1 + C T CESC 1129641 + 1129621 1129661 41 GGTGGTGGTGCTGGTGTTTGCGGGATGTTGGCTGCCCTTCT GGTGGTGGTGCTGGTGTTTGTGGGATGTTGGCTGCCCTTCT Direct Loss 0.962953559366886 0 0.93429196 0 prediction 0.925907118733772 Functional Loss - SSTR5 ENSG00000162009 CDS Human protein_coding chr16:1129641 chr16:1129641 nonsynonymous SNV 0.283 0 21 hm5C_associated_SNPs_48157 0 0 0 0 0 exosome 0.500231643921092 0 0.86858392 0.000463287842184856 hm5C_site_3477 DeepMRMD:0.86858392;iRNA_m5C:0.000463287842184856 3478 chr20 61472005 61472005 1 + C T STAD 61472005 + 61471985 61472025 41 CATTGGGGCCCAGGGGACACCGGGGATCTGCGACACCTCAG CATTGGGGCCCAGGGGACACTGGGGATCTGCGACACCTCAG Direct Loss 0.962934460720127 0 0.91313887 0 prediction 0.925868921440253 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61472005 chr20:61472005 nonsynonymous SNV 0.175 5 21 hm5C_associated_SNPs_48158 0 0 1 0 0 Cytosol 0.500231643921092 0 0.82627774 0.000463287842184856 hm5C_site_3478 DeepMRMD:0.82627774;iRNA_m5C:0.000463287842184856 3479 chr5 112228594 112228594 1 + C T STAD 112228594 + 112228574 112228614 41 ACAAACGCACATCAAAGAGTCGGGAGAGGCACAATTCACCA ACAAACGCACATCAAAGAGTTGGGAGAGGCACAATTCACCA Direct Loss 0.962931441390236 0 0.7872585 0 prediction 0.925862882780472 Functional Loss - SRP19 ENSG00000212643 CDS Human protein_coding chr5:112228594 chr5:112228594 nonsynonymous SNV 0.012 2 21 hm5C_associated_SNPs_48159 0 0 0 0 0 Ribosome 0.500231405034976 0 0.574517 0.000462810069951081 hm5C_site_3479 DeepMRMD:0.574517;iRNA_m5C:0.000462810069951081 3480 chr9 131847514 131847514 1 + C T UCEC 131847514 + 131847494 131847534 41 ACAGCAGTGGGCACCAAGTACGGGATGCCCTCCAGCCATTC ACAGCAGTGGGCACCAAGTATGGGATGCCCTCCAGCCATTC Direct Loss 0.962928514218697 0 0.91022825 0 prediction 0.925857028437394 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847514 chr9:131847514 synonymous SNV . 0 21 hm5C_associated_SNPs_48160 0 0 0 1 2 Ribosome 0.500231643921092 0 0.8204565 0.000463287842184856 hm5C_site_3480 DeepMRMD:0.8204565;iRNA_m5C:0.000463287842184856 3481 chr8 145086777 145086777 1 + C T rs192803282 145086777 + 145086757 145086797 41 AGAAGTTGGTGCGGCTCATTCGGGAGAATCACGAGCTCAAG AGAAGTTGGTGCGGCTCATTTGGGAGAATCACGAGCTCAAG Direct Loss 0.962924640103721 0 0.94346285 0 prediction 0.925849280207443 Functional Loss - SPATC1 ENSG00000186583 CDS Human protein_coding chr8:145086777 chr8:145086777 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_48161 0 0 0 0 0 chromatin 0.500229449382402 0 0.8869257 0.000458898764804205 hm5C_site_3481 DeepMRMD:0.8869257;iRNA_m5C:0.000458898764804205 3482 chr19 16980352 16980352 1 + C T SKCM 16980352 + 16980332 16980372 41 TGTACGAGGACCGGCAGATCCTGGAGGACGCAGCAGCGCTC TGTACGAGGACCGGCAGATCTTGGAGGACGCAGCAGCGCTC Direct Loss 0.962890271403224 0 0.92711747 0 prediction 0.925780542806448 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16980352 chr19:16980352 synonymous SNV . 0 21 hm5C_associated_SNPs_48162 0 0 1 0 1 Cytosol 0.500231643921054 0 0.85423494 0.000463287842107585 hm5C_site_3482 DeepMRMD:0.85423494;iRNA_m5C:0.000463287842107585 3483 chr16 29831039 29831039 1 + C A BLCA 29831039 + 29831019 29831059 41 AGCCCCCCACTCCGATCCTCCGGGAGTAGTCTCTTCCCTCG AGCCCCCCACTCCGATCCTCAGGGAGTAGTCTCTTCCCTCG Direct Loss 0.962884434593669 0 0.91825294 0 prediction 0.925768869187338 Functional Loss - PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29831039 chr16:29831039 synonymous SNV . 0 21 hm5C_associated_SNPs_48163 0 0 1 0 0 Ribosome 0.500231635224621 0 0.83650588 0.000463270449242215 hm5C_site_3483 DeepMRMD:0.83650588;iRNA_m5C:0.000463270449242215 3484 chr16 333338 333338 1 + C A rs199805826 333338 + 333318 333358 41 ACACCCTGGGCCTGGCCCTGCGGGAGCACCCTGCCCTGCTG ACACCCTGGGCCTGGCCCTGAGGGAGCACCCTGCCCTGCTG Direct Loss 0.962858091522375 0 0.8955679 0 prediction 0.925716183044749 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:333338 chr16:333338 synonymous SNV . 0 21 hm5C_associated_SNPs_48164 0 0 0 0 0 nucleolus 0.500231643921092 0 0.7911358 0.000463287842184856 hm5C_site_3484 DeepMRMD:0.7911358;iRNA_m5C:0.000463287842184856 3485 chr14 29237592 29237592 1 + C T STAD 29237592 + 29237572 29237612 41 AGCGTGGACCGGCTGGTCAACGGGGAGATCCCGTACGCCAC AGCGTGGACCGGCTGGTCAATGGGGAGATCCCGTACGCCAC Direct Loss 0.962852074096524 0 0.94247806 0 prediction 0.925704148193049 Functional Loss - FOXG1 ENSG00000176165 CDS Human protein_coding chr14:29237592 chr14:29237592 synonymous SNV . 0 21 hm5C_associated_SNPs_48165 0 0 0 0 0 Cytosol 0.500231643921092 0 0.88495612 0.000463287842184856 hm5C_site_3485 DeepMRMD:0.88495612;iRNA_m5C:0.000463287842184856 3486 chr8 8560185 8560185 1 + C T SKCM 8560185 + 8560165 8560205 41 CCTCGCTGGCCGCCACGGTCCTGGGGCTTCTGCTGGCGTCG CCTCGCTGGCCGCCACGGTCTTGGGGCTTCTGCTGGCGTCG Direct Loss 0.962840875574498 0 0.88907856 0 prediction 0.925681751148997 Functional Loss - CLDN23 ENSG00000253958 CDS Human protein_coding chr8:8560185 chr8:8560185 synonymous SNV . 0 21 hm5C_associated_SNPs_48166 0 0 0 0 0 Endoplasmic reticulum 0.50023169064638 0 0.77815712 0.000463381292760801 hm5C_site_3486 DeepMRMD:0.77815712;iRNA_m5C:0.000463381292760801 3487 chr15 68099074 68099074 1 + C G rs187760642 68099074 + 68099054 68099094 41 TGGAGGAGAGGCGGAGCCAGCAGGGGCCCCCGTGAGGCTGC TGGAGGAGAGGCGGAGCCAGGAGGGGCCCCCGTGAGGCTGC Direct Loss 0.962831057845601 0 0.92198837 0 prediction 0.925662115691202 Functional Loss - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:68099074 chr15:68099074 nonsynonymous SNV 0.984 0 21 hm5C_associated_SNPs_48167 0 0 1 0 1 Cytosol 0.500231643917464 0 0.84397674 0.000463287834928883 hm5C_site_3487 DeepMRMD:0.84397674;iRNA_m5C:0.000463287834928883 3488 chr1 90098783 90098783 1 + C G rs545116633 90098783 + 90098763 90098803 41 CAAGCCATGAGCAGCGACCCCGCGGGCGACGCCGCCGTCCC CAAGCCATGAGCAGCGACCCGGCGGGCGACGCCGCCGTCCC Direct Loss 0.962824962421113 0 0.84443223 0 prediction 0.925649924842227 Functional Loss - LRRC8C ENSG00000230735 ncRNA_intronic Human sense_intronic chr1:90098783 chr1:90098783 . . 0 21 hm5C_associated_SNPs_48168 0 0 1 0 1 Endoplasmic reticulum 0.500231643915392 0 0.68886446 0.000463287830784864 hm5C_site_3488 DeepMRMD:0.68886446;iRNA_m5C:0.000463287830784864 3489 chr2 170550995 170550995 1 + C T rs201743910 170550995 + 170550975 170551015 41 TGCTGCAGTTGGCGGTCGGGCTAGAGAAGAGAGGCGCCTGC TGCTGCAGTTGGCGGTCGGGTTAGAGAAGAGAGGCGCCTGC Direct Loss 0.962819574616356 0 0.79420733 0 prediction 0.925639149232711 Functional Loss - PHOSPHO2;PHOSPHO2-KLHL23 ENSG00000144362 UTR5 Human protein_coding chr2:170550995 chr2:170550995 . . 0 21 hm5C_associated_SNPs_48169 0 0 1 0 1 unknown 0.500231643921091 0 0.58841466 0.000463287842182636 hm5C_site_3489 DeepMRMD:0.58841466;iRNA_m5C:0.000463287842182636 3490 chr20 61443915 61443915 1 + C T UCEC 61443915 + 61443895 61443935 41 GTGGAGGAGGAAGGAAGCCCCGGGGACCCCGACCACGAGGC GTGGAGGAGGAAGGAAGCCCTGGGGACCCCGACCACGAGGC Direct Loss 0.962803132329117 0 0.909351 0 prediction 0.925606264658234 Functional Loss - OGFR ENSG00000060491 CDS Human protein_coding chr20:61443915 chr20:61443915 synonymous SNV . 0 21 hm5C_associated_SNPs_48170 0 0 1 0 0 Ribosome 0.500231643973151 0 0.818702 0.00046328794630246 hm5C_site_3490 DeepMRMD:0.818702;iRNA_m5C:0.00046328794630246 3491 chr22 37329987 37329987 1 + C T BLCA 37329987 + 37329967 37330007 41 ACCTCCCGCACCGGCTACAACGGGATCTGGAGCGAGTGGAG ACCTCCCGCACCGGCTACAATGGGATCTGGAGCGAGTGGAG Direct Loss 0.96277149689241 0 0.7069436 0 prediction 0.92554299378482 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37329987 chr22:37329987 synonymous SNV . 0 21 hm5C_associated_SNPs_48171 0 0 0 0 1 Endoplasmic reticulum 0.500231643921093 0 0.4138872 0.000463287842185522 hm5C_site_3491 DeepMRMD:0.4138872;iRNA_m5C:0.000463287842185522 3492 chr19 8841975 8841975 1 + C A COAD 8841975 + 8841955 8841995 41 TGTGCAGATACCTGTGCCTACGAGATGGCGCTGTCCACCTC TGTGCAGATACCTGTGCCTAAGAGATGGCGCTGTCCACCTC Direct Loss 0.962770667990135 0 0.63386744 0 prediction 0.92554133598027 Functional Loss - OR2Z1 ENSG00000181733 CDS Human protein_coding chr19:8841975 chr19:8841975 stopgain 0.006 1 21 hm5C_associated_SNPs_48172 0 0 0 0 0 unknown 0.500231643834623 0 0.26773488 0.000463287669246082 hm5C_site_3492 DeepMRMD:0.26773488;iRNA_m5C:0.000463287669246082 3493 chr14 94582172 94582172 1 + C G GBM 94582172 + 94582152 94582192 41 TGCCATGGGCTTCACTGCGGCGGGAATCGCCTCGTCCTCCA TGCCATGGGCTTCACTGCGGGGGGAATCGCCTCGTCCTCCA Direct Loss 0.962762128581527 0 0.8964958 0 prediction 0.925524257163055 Functional Loss - IFI27 ENSG00000165949 CDS Human protein_coding chr14:94582172 chr14:94582172 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48173 0 0 0 0 1 Endoplasmic reticulum 0.500231643921039 0 0.7929916 0.000463287842078497 hm5C_site_3493 DeepMRMD:0.7929916;iRNA_m5C:0.000463287842078497 3494 chr17 72367986 72367986 1 + C T COAD 72367986 + 72367966 72368006 41 ATCCAGGTGGTCATCGTGTTCGCGGGCTTCCTCCTGCAGGG ATCCAGGTGGTCATCGTGTTTGCGGGCTTCCTCCTGCAGGG Direct Loss 0.962746095165639 0 0.48368734 0 prediction 0.925492190331278 Functional Loss - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72367986 chr17:72367986 synonymous SNV . 0 21 hm5C_associated_SNPs_48174 0 0 0 0 0 exosome 0.500231643892041 0 0 0.000463287784082222 hm5C_site_3494 DeepMRMD:0;iRNA_m5C:0.000463287784082222 3495 chr9 138237838 138237838 1 + C T rs570629031 138237838 + 138237818 138237858 41 GCCTGCAGGAGGGCTGTGGGCGACAGTGTGGGCGCCCACCA GCCTGCAGGAGGGCTGTGGGTGACAGTGTGGGCGCCCACCA Direct Loss 0.962745613817017 0 0.87952834 0 prediction 0.925491227634034 Functional Loss - C9orf62 ENSG00000178243 UTR3 Human lincRNA chr9:138237838 chr9:138237838 . . 0 21 hm5C_associated_SNPs_48175 0 0 0 0 0 unknown 0.500231644206597 0 0.75905668 0.000463288413193652 hm5C_site_3495 DeepMRMD:0.75905668;iRNA_m5C:0.000463288413193652 3496 chr19 3938612 3938612 1 + C T BLCA 3938612 + 3938592 3938632 41 TTTCCCCAGTGCTGGAGTCTCTGGACATGGAGGCCATGCTG TTTCCCCAGTGCTGGAGTCTTTGGACATGGAGGCCATGCTG Direct Loss 0.962742087035508 0 0.43532827 0 prediction 0.925484174071015 Functional Loss - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3938612 chr19:3938612 synonymous SNV . 0 21 hm5C_associated_SNPs_48176 0 0 0 0 1 exosome 0.50023164921013 0 0 0.000463298420260383 hm5C_site_3496 DeepMRMD:0;iRNA_m5C:0.000463298420260383 3497 chr6 35287768 35287768 1 + C T CESC 35287768 + 35287748 35287788 41 TGGAGGAGGTGCGGCAGAACCGGCAGAGGGCTGACGAGGAT TGGAGGAGGTGCGGCAGAACTGGCAGAGGGCTGACGAGGAT Direct Loss 0.962732315487693 0 0.78937703 0 prediction 0.925464630975386 Functional Loss - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35287768 chr6:35287768 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_48177 0 0 0 0 1 Ribosome 0.500231608210824 0 0.57875406 0.000463216421648482 hm5C_site_3497 DeepMRMD:0.57875406;iRNA_m5C:0.000463216421648482 3498 chr22 45683261 45683261 1 + C T COAD 45683261 + 45683241 45683281 41 CTGGTCAGGGTGGGTGCCAACGGGACCTGCCTGTGGGATCC CTGGTCAGGGTGGGTGCCAATGGGACCTGCCTGTGGGATCC Direct Loss 0.962722174724212 0 0.90895283 0 prediction 0.925444349448425 Functional Loss - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45683261 chr22:45683261 synonymous SNV . 0 21 hm5C_associated_SNPs_48178 0 0 0 0 1 exosome 0.500231625160173 0 0.81790566 0.000463250320345221 hm5C_site_3498 DeepMRMD:0.81790566;iRNA_m5C:0.000463250320345221 3499 chr17 46000522 46000522 1 + C T UCEC 46000522 + 46000502 46000542 41 CTGCCAAAGATTGCCCCAGCCGGGAGCATCATCAGCCTGAA CTGCCAAAGATTGCCCCAGCTGGGAGCATCATCAGCCTGAA Direct Loss 0.962712808693981 0 0.8797356 0 prediction 0.925425617387962 Functional Loss - SP2 ENSG00000167182 CDS Human protein_coding chr17:46000522 chr17:46000522 synonymous SNV . 0 21 hm5C_associated_SNPs_48179 0 0 0 0 0 Cytosol 0.500231643912966 0 0.7594712 0.000463287825931857 hm5C_site_3499 DeepMRMD:0.7594712;iRNA_m5C:0.000463287825931857 3500 chr9 126129551 126129551 1 + C T rs147047443 126129551 + 126129531 126129571 41 CGCTCTGACCCGGCCCTCTACGGGGGTGTCCAGGCCGCCTT CGCTCTGACCCGGCCCTCTATGGGGGTGTCCAGGCCGCCTT Direct Loss 0.962703947259137 0 0.9533391 0 prediction 0.925407894518274 Functional Loss - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126129551 chr9:126129551 synonymous SNV . 0 21 hm5C_associated_SNPs_48180 0 0 0 0 0 exosome 0.500231643921092 0 0.9066782 0.000463287842184856 hm5C_site_3500 DeepMRMD:0.9066782;iRNA_m5C:0.000463287842184856 3501 chr11 6631462 6631462 1 + C T UCEC 6631462 + 6631442 6631482 41 TTCTGTGGGAACTGGTGACACGGGAGGTACCCTTTGCTGAC TTCTGTGGGAACTGGTGACATGGGAGGTACCCTTTGCTGAC Direct Loss 0.962684565144229 0 0.89518034 0 prediction 0.925369130288459 Functional Loss - ILK ENSG00000166333 CDS Human protein_coding chr11:6631462 chr11:6631462 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_48181 0 0 1 0 2 Endoplasmic reticulum 0.500231644005235 0 0.79036068 0.000463288010470908 hm5C_site_3501 DeepMRMD:0.79036068;iRNA_m5C:0.000463288010470908 3502 chr5 180377116 180377116 1 + C T UCEC 180377116 + 180377096 180377136 41 GGTGGCGCGTGGGAGTGTGCCGGGATGATGTGGACAGGAGG GGTGGCGCGTGGGAGTGTGCTGGGATGATGTGGACAGGAGG Direct Loss 0.962674351414329 0 0.8682126 0 prediction 0.925348702828658 Functional Loss - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180377116 chr5:180377116 nonsynonymous SNV 0.044 3 21 hm5C_associated_SNPs_48182 0 0 0 0 0 chromatin 0.500231643972803 0 0.7364252 0.000463287945606572 hm5C_site_3502 DeepMRMD:0.7364252;iRNA_m5C:0.000463287945606572 3503 chr22 50633335 50633335 1 + C A OV 50633335 + 50633315 50633355 41 TGTGGCTGTTGCAGACCATCCGGGAGGTGCAGCCTGACGTG TGTGGCTGTTGCAGACCATCAGGGAGGTGCAGCCTGACGTG Direct Loss 0.962658049440365 0 0.9259219 0 prediction 0.925316098880729 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50633335 chr22:50633335 synonymous SNV . 0 21 hm5C_associated_SNPs_48183 0 0 1 0 1 Ribosome 0.500231643948435 0 0.8518438 0.000463287896869558 hm5C_site_3503 DeepMRMD:0.8518438;iRNA_m5C:0.000463287896869558 3504 chr8 27348608 27348608 1 + C T rs567156447 27348608 + 27348588 27348628 41 AAGGGGGTGTGGGGAGGAGGCGGGGCCAGGGCAGGGGCGGG AAGGGGGTGTGGGGAGGAGGTGGGGCCAGGGCAGGGGCGGG Direct Loss 0.962652462010225 0 0.91701794 0 prediction 0.925304924020449 Functional Loss - EPHX2 ENSG00000120915 UTR5 Human protein_coding chr8:27348608 chr8:27348608 . . 0 21 hm5C_associated_SNPs_48184 0 0 0 0 0 Cytosol 0.500231639886114 0 0.83403588 0.00046327977222882 hm5C_site_3504 DeepMRMD:0.83403588;iRNA_m5C:0.00046327977222882 3505 chr17 7909801 7909801 1 + C A COAD 7909801 + 7909781 7909821 41 CAGCTGTGGCCCGCCACATCCGGGATGCGCAGGTCCCTGGC CAGCTGTGGCCCGCCACATCAGGGATGCGCAGGTCCCTGGC Direct Loss 0.962639643803487 0 0.93395543 0 prediction 0.925279287606974 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7909801 chr17:7909801 synonymous SNV . 0 21 hm5C_associated_SNPs_48185 0 0 0 0 0 exosome 0.500231643921092 0 0.86791086 0.000463287842184856 hm5C_site_3505 DeepMRMD:0.86791086;iRNA_m5C:0.000463287842184856 3506 chr7 63796694 63796694 1 + C A COAD 63796694 + 63796674 63796714 41 CCCCAGAAGAGTGGGAATGCCTGGACTCTGCTCAGCAGCGT CCCCAGAAGAGTGGGAATGCATGGACTCTGCTCAGCAGCGT Direct Loss 0.962622701024021 0 0.17619687 0 prediction 0.925245402048042 Functional Loss - ZNF736 ENSG00000234444 CDS Human protein_coding chr7:63796694 chr7:63796694 nonsynonymous SNV 0.437 3 21 hm5C_associated_SNPs_48186 0 0 1 0 2 nucleus 0.50023196360133 0 0 0.000463927202659864 hm5C_site_3506 DeepMRMD:0;iRNA_m5C:0.000463927202659864 3507 chr16 28509522 28509522 1 + C G COAD 28509522 + 28509502 28509542 41 GGACTCCGGCCTGGGAGCAGCAGGAGGAGCCCCCAGCCCCC GGACTCCGGCCTGGGAGCAGGAGGAGGAGCCCCCAGCCCCC Direct Loss 0.962620352331014 0 0.90269923 0 prediction 0.925240704662028 Functional Loss - APOBR ENSG00000184730 CDS Human protein_coding chr16:28509522 chr16:28509522 nonsynonymous SNV 0.007 1 21 hm5C_associated_SNPs_48187 0 0 0 0 0 exosome 0.500231643921092 0 0.80539846 0.000463287842184856 hm5C_site_3507 DeepMRMD:0.80539846;iRNA_m5C:0.000463287842184856 3508 chrX 73524150 73524150 1 + C T UCEC 73524150 + 73524130 73524170 41 GACACTCTGGCCATTGGGCTCGGGGATGCCCTAGAGGAGGA GACACTCTGGCCATTGGGCTTGGGGATGCCCTAGAGGAGGA Direct Loss 0.962582650202828 0 0.91187 0 prediction 0.925165300405655 Functional Loss - ZCCHC13 ENSG00000187969 CDS Human protein_coding chrX:73524150 chrX:73524150 nonsynonymous SNV 0.041 2 21 hm5C_associated_SNPs_48188 0 0 0 0 0 unknown 0.500231643921092 0 0.82374 0.000463287842184856 hm5C_site_3508 DeepMRMD:0.82374;iRNA_m5C:0.000463287842184856 3509 chr15 22742891 22742891 1 + C A UCEC 22742891 + 22742871 22742911 41 GGAGGCAGGAGGAGAAGATACGGGAGCAGGAAGAGAAGATA GGAGGCAGGAGGAGAAGATAAGGGAGCAGGAAGAGAAGATA Direct Loss 0.962574361915309 0 0.8531703 0 prediction 0.925148723830618 Functional Loss - GOLGA6L1;GOLGA6L22 ENSG00000197414 CDS Human other chr15:22742891 chr15:22742891 synonymous SNV . 0 21 hm5C_associated_SNPs_48189 0 0 0 0 0 unknown 0.500231643921092 0 0.7063406 0.000463287842184856 hm5C_site_3509 DeepMRMD:0.7063406;iRNA_m5C:0.000463287842184856 3510 chr6 74073358 74073358 1 + C A UCEC 74073358 + 74073338 74073378 41 TCAATAGAAGTCCGGGAGGCCGGGACGCAGCGTTCGGTGGA TCAATAGAAGTCCGGGAGGCAGGGACGCAGCGTTCGGTGGA Direct Loss 0.962553963034323 0 0.89321387 0 prediction 0.925107926068646 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74073358 chr6:74073358 synonymous SNV . 0 21 hm5C_associated_SNPs_48190 0 0 0 0 1 unknown 0.500231471685937 0 0.78642774 0.000462943371874802 hm5C_site_3510 DeepMRMD:0.78642774;iRNA_m5C:0.000462943371874802 3511 chr17 77709291 77709291 1 + C T STAD 77709291 + 77709271 77709311 41 CTCCTGGACTACGGACCAAACGGGATGCTGCTCCCTAAAGA CTCCTGGACTACGGACCAAATGGGATGCTGCTCCCTAAAGA Direct Loss 0.962539607355733 0 0.8940945 0 prediction 0.925079214711466 Functional Loss - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77709291 chr17:77709291 synonymous SNV . 0 21 hm5C_associated_SNPs_48191 0 0 0 0 0 exosome 0.500231643921092 0 0.788189 0.000463287842184856 hm5C_site_3511 DeepMRMD:0.788189;iRNA_m5C:0.000463287842184856 3512 chrX 136003774 136003774 1 + C G rs770475038 136003774 + 136003754 136003794 41 CCTCCCTGTGGGGCAGGGCTCGGGACCTGCAGCCCGCCATG CCTCCCTGTGGGGCAGGGCTGGGGACCTGCAGCCCGCCATG Direct Loss 0.962532303749221 0 0.9499761 0 prediction 0.925064607498443 Functional Loss - RBMX;GPR101 ENSG00000234062 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:136003774 chrX:136003774 . . 0 21 hm5C_associated_SNPs_48192 0 0 0 0 0 unknown 0.500231643921092 0 0.8999522 0.000463287842184856 hm5C_site_3512 DeepMRMD:0.8999522;iRNA_m5C:0.000463287842184856 3513 chr7 134925358 134925358 1 + C T UCEC 134925358 + 134925338 134925378 41 AGCTGCAGGAGCTTGAGCATCGGGTGGCCCGGAGACGGCTG AGCTGCAGGAGCTTGAGCATTGGGTGGCCCGGAGACGGCTG Direct Loss 0.962528900858096 0 0.9087876 0 prediction 0.925057801716193 Functional Loss - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134925358 chr7:134925358 nonsynonymous SNV 0.405 4 21 hm5C_associated_SNPs_48193 0 0 0 0 1 exosome 0.500231643921097 0 0.8175752 0.000463287842193294 hm5C_site_3513 DeepMRMD:0.8175752;iRNA_m5C:0.000463287842193294 3514 chr1 207867882 207867882 1 + C A UCEC 207867882 + 207867862 207867902 41 AAAGATGATCAAGTGGGCATCTGGAGTGGCCCAGCCCCTCA AAAGATGATCAAGTGGGCATATGGAGTGGCCCAGCCCCTCA Direct Loss 0.962513891090849 0 0.3649909 0 prediction 0.925027782181698 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207867882 chr1:207867882 synonymous SNV . 0 21 hm5C_associated_SNPs_48194 0 0 0 0 0 Endoplasmic reticulum 0.500231643530964 0 0 0.000463287061927886 hm5C_site_3514 DeepMRMD:0;iRNA_m5C:0.000463287061927886 3515 chr12 130648572 130648572 1 + C T CESC 130648572 + 130648552 130648592 41 CCTGGCAGCCTGGGCCATCCCGGCGGTGAAGACCATCCTGA CCTGGCAGCCTGGGCCATCCTGGCGGTGAAGACCATCCTGA Direct Loss 0.962510943691291 0 0.90457463 0 prediction 0.925021887382583 Functional Loss - FZD10 ENSG00000111432 CDS Human protein_coding chr12:130648572 chr12:130648572 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_48195 0 0 0 0 0 exosome 0.500231643920752 0 0.80914926 0.000463287841504512 hm5C_site_3515 DeepMRMD:0.80914926;iRNA_m5C:0.000463287841504512 Height 3516 chr19 3543663 3543663 1 + C T UCEC 3543663 + 3543643 3543683 41 TGTGGAAAGACAGGCCAATCCGGGGCAAGGAATACGGTGAG TGTGGAAAGACAGGCCAATCTGGGGCAAGGAATACGGTGAG Direct Loss 0.962508987751345 0 0.8934171 0 prediction 0.925017975502689 Functional Loss - C19orf71 ENSG00000183397 CDS Human protein_coding chr19:3543663 chr19:3543663 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_48196 0 0 0 0 1 nucleolus 0.500231643110594 0 0.7868342 0.000463286221188186 hm5C_site_3516 DeepMRMD:0.7868342;iRNA_m5C:0.000463286221188186 3517 chr6 7390256 7390256 1 + C T rs112923583 7390256 + 7390236 7390276 41 ATGGACTACCGGCGGCTTCTCATGAGCCGGGTGGTCCCCGG ATGGACTACCGGCGGCTTCTTATGAGCCGGGTGGTCCCCGG Direct Loss 0.962494474375758 0 0.859353 0 prediction 0.924988948751517 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7390256 chr6:7390256 synonymous SNV . 0 21 hm5C_associated_SNPs_48197 0 0 1 0 1 Ribosome 0.500231643882172 0 0.718706 0.000463287764344678 hm5C_site_3517 DeepMRMD:0.718706;iRNA_m5C:0.000463287764344678 3518 chr15 22742753 22742753 1 + C T COAD 22742753 + 22742733 22742773 41 GGGAGAAGGAGGAGAAGATACGGGAGCTGGAAGAGAAGATG GGGAGAAGGAGGAGAAGATATGGGAGCTGGAAGAGAAGATG Direct Loss 0.962454145720976 0 0.8564706 0 prediction 0.924908291441952 Functional Loss - GOLGA6L1;GOLGA6L22 ENSG00000197414 CDS Human other chr15:22742753 chr15:22742753 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48198 0 0 0 0 0 unknown 0.500231643921092 0 0.7129412 0.000463287842184856 hm5C_site_3518 DeepMRMD:0.7129412;iRNA_m5C:0.000463287842184856 3519 chr3 9989099 9989099 1 + G A BLCA 9989099 - 9989079 9989119 41 GTGCATGGTGTAGGGTTGCTCGCGACAGACCTGCTGTCCAC GTGCATGGTGTAGGGTTGCTTGCGACAGACCTGCTGTCCAC Direct Loss 0.96242974345799 0 0.9005108 0 prediction 0.924859486915981 Functional Loss - PRRT3 ENSG00000163704 CDS Human protein_coding chr3:9989099 chr3:9989099 synonymous SNV . 0 21 hm5C_associated_SNPs_48199 0 0 1 0 0 nucleolus 0.500231643921079 0 0.8010216 0.000463287842158877 hm5C_site_3519 DeepMRMD:0.8010216;iRNA_m5C:0.000463287842158877 3520 chr12 108912413 108912413 1 + C A LIHC 108912413 + 108912393 108912433 41 ATGAGAAAGCACTGGTCAACCGCGATCGGACACTGCCTCTT ATGAGAAAGCACTGGTCAACAGCGATCGGACACTGCCTCTT Direct Loss 0.962424852805579 0 0.36941147 0 prediction 0.924849705611158 Functional Loss - FICD ENSG00000198855 CDS Human protein_coding chr12:108912413 chr12:108912413 nonsynonymous SNV 0.935 1 21 hm5C_associated_SNPs_48200 0 0 0 0 0 chromatin 0.500231596475901 0 0 0.000463192951802416 hm5C_site_3520 DeepMRMD:0;iRNA_m5C:0.000463192951802416 3521 chr1 26515860 26515860 1 + C T rs17163640 26515860 + 26515840 26515880 41 GCCAGTGGAAGGAGCAGAACCGGGAGCTGTACTCAGAGGGC GCCAGTGGAAGGAGCAGAACTGGGAGCTGTACTCAGAGGGC Direct Loss 0.962419814071286 0 0.90221274 0 prediction 0.924839628142571 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26515860 chr1:26515860 nonsynonymous SNV 0.984 0 21 hm5C_associated_SNPs_48201 0 0 0 0 1 Cytosol 0.500231643921184 0 0.80442548 0.000463287842367821 hm5C_site_3521 DeepMRMD:0.80442548;iRNA_m5C:0.000463287842367821 3522 chr3 147127928 147127928 1 + C A LUSC 147127928 + 147127908 147127948 41 GGACGCCGGCCCCCAGTACCCAGCGATCGGCGTGACCACCT GGACGCCGGCCCCCAGTACCAAGCGATCGGCGTGACCACCT Direct Loss 0.962407944921919 0 0.3411129 0 prediction 0.924815889843838 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147127928 chr3:147127928 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_48202 0 0 0 0 0 exosome 0.500231643921092 0 0 0.000463287842184634 hm5C_site_3522 DeepMRMD:0;iRNA_m5C:0.000463287842184634 3523 chr11 7586921 7586921 1 + C T BLCA 7586921 + 7586901 7586941 41 TGGAGATGCTGGAGCTTCCTCAGGAGAGAGCAGCCCTCCTG TGGAGATGCTGGAGCTTCCTTAGGAGAGAGCAGCCCTCCTG Direct Loss 0.962407093476356 0 0.9317409 0 prediction 0.924814186952711 Functional Loss - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7586921 chr11:7586921 stopgain 1.000 0 21 hm5C_associated_SNPs_48203 0 0 1 0 1 Cytosol 0.500231643905382 0 0.8634818 0.000463287810763768 hm5C_site_3523 DeepMRMD:0.8634818;iRNA_m5C:0.000463287810763768 3524 chr2 177053951 177053951 1 + C T STAD 177053951 + 177053931 177053971 41 CGCCACCTCGGCCGTCTTCTCGGGCGGCGGCTCTTTCCTCC CGCCACCTCGGCCGTCTTCTTGGGCGGCGGCTCTTTCCTCC Direct Loss 0.962400611301317 0 0.95256984 0 prediction 0.924801222602635 Functional Loss - HOXD1 ENSG00000128645 CDS Human protein_coding chr2:177053951 chr2:177053951 nonsynonymous SNV 0.977 3 21 hm5C_associated_SNPs_48204 0 0 0 0 0 exosome 0.500231643212302 0 0.90513968 0.000463286424604137 hm5C_site_3524 DeepMRMD:0.90513968;iRNA_m5C:0.000463286424604137 3525 chr2 239229372 239229372 1 + C A rs13398676 239229372 + 239229352 239229392 41 ATTCGGAGGCCGCCGCTGACCGAGAAGCTGCTGAGCAAGCC ATTCGGAGGCCGCCGCTGACAGAGAAGCTGCTGAGCAAGCC Direct Loss 0.962389769455571 0 0.76680976 0 prediction 0.924779538911141 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239229372 chr2:239229372 synonymous SNV . 0 21 hm5C_associated_SNPs_48205 0 0 1 0 1 Ribosome 0.500231643921075 0 0.53361952 0.000463287842149551 hm5C_site_3525 DeepMRMD:0.53361952;iRNA_m5C:0.000463287842149551 3526 chr19 7964965 7964965 1 + C T HNSC 7964965 + 7964945 7964985 41 ACCTGGAGGGGCTTTTCCCCCAGGAGCTAGCTCGGGCAGCC ACCTGGAGGGGCTTTTCCCCTAGGAGCTAGCTCGGGCAGCC Direct Loss 0.96238297781025 0 0.89838284 0 prediction 0.9247659556205 Functional Loss - LRRC8E ENSG00000171017;ENSG00000214248 CDS Human other chr19:7964965 chr19:7964965 stopgain 0.855 0 21 hm5C_associated_SNPs_48206 0 0 1 0 0 chromatin 0.500231643921093 0 0.79676568 0.000463287842185522 hm5C_site_3526 DeepMRMD:0.79676568;iRNA_m5C:0.000463287842185522 3527 chr1 22964233 22964233 1 + C T STAD 22964233 + 22964213 22964253 41 AGGCAGGAAGACCTGGCAGACGGGGGCGGCCAGGCCTCAAG AGGCAGGAAGACCTGGCAGATGGGGGCGGCCAGGCCTCAAG Direct Loss 0.96237664626024 0 0.90903026 0 prediction 0.92475329252048 Functional Loss - C1QA ENSG00000173372 CDS Human protein_coding chr1:22964233 chr1:22964233 nonsynonymous SNV 0.016 2 21 hm5C_associated_SNPs_48207 0 0 0 0 1 exosome 0.500231643921092 0 0.81806052 0.000463287842184856 hm5C_site_3527 DeepMRMD:0.81806052;iRNA_m5C:0.000463287842184856 3528 chr4 71024325 71024325 1 + C T SKCM 71024325 + 71024305 71024345 41 CCCTCCTTCAAGGTTTTTTTCAGCAGCTGCAGCACCCGCTG CCCTCCTTCAAGGTTTTTTTTAGCAGCTGCAGCACCCGCTG Direct Loss 0.962376553978049 0 0.924749 0 prediction 0.924753107956098 Functional Loss - PRR27 ENSG00000187533 CDS Human protein_coding chr4:71024325 chr4:71024325 nonsynonymous SNV 0.023 0 21 hm5C_associated_SNPs_48208 0 0 0 0 0 unknown 0.500231643921103 0 0.849498 0.000463287842206839 hm5C_site_3528 DeepMRMD:0.849498;iRNA_m5C:0.000463287842206839 3529 chr6 54214608 54214608 1 + C T BRCA 54214608 + 54214588 54214628 41 GGTCTGATGGGCGAGGAAAACGGCATGCCACGAAGCCATGT GGTCTGATGGGCGAGGAAAATGGCATGCCACGAAGCCATGT Direct Loss 0.962376483859732 0 0.4924996 0 prediction 0.924752967719464 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54214608 chr6:54214608 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_48209 0 0 0 2 2 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3529 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3530 chr21 42807886 42807886 1 + C T SKCM 42807886 + 42807866 42807906 41 CTGCCAGCCATCGCCGTCATCGGGGACCAGAGCTCGGGCAA CTGCCAGCCATCGCCGTCATTGGGGACCAGAGCTCGGGCAA Direct Loss 0.962372611427836 0 0.9531386 0 prediction 0.924745222855672 Functional Loss - MX1 ENSG00000157601 CDS Human protein_coding chr21:42807886 chr21:42807886 synonymous SNV . 0 21 hm5C_associated_SNPs_48210 0 0 0 0 1 exosome 0.500227331111314 0 0.9062772 0.000454662222628022 hm5C_site_3530 DeepMRMD:0.9062772;iRNA_m5C:0.000454662222628022 3531 chr12 14927594 14927594 1 + C G KIRP 14927594 + 14927574 14927614 41 AGTACCTTACGGCGGAGATCCTGGAGCTGGCTGGCAACGCC AGTACCTTACGGCGGAGATCGTGGAGCTGGCTGGCAACGCC Direct Loss 0.962341233899497 0 0.91050744 0 prediction 0.924682467798994 Functional Loss - H2AFJ ENSG00000246705 CDS Human protein_coding chr12:14927594 chr12:14927594 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_48211 0 0 1 0 0 Ribosome 0.500231644755217 0 0.82101488 0.000463289510434839 hm5C_site_3531 DeepMRMD:0.82101488;iRNA_m5C:0.000463289510434839 3532 chr16 86612695 86612695 1 + C T rs546754065 86612695 + 86612675 86612715 41 CGGCCGGGCAAGGGCAGCTACTGGACGCTGGACCCCCGCTG CGGCCGGGCAAGGGCAGCTATTGGACGCTGGACCCCCGCTG Direct Loss 0.96233637968391 0 0.9117072 0 prediction 0.924672759367819 Functional Loss - FOXL1 ENSG00000176678 CDS Human protein_coding chr16:86612695 chr16:86612695 synonymous SNV . 0 21 hm5C_associated_SNPs_48212 0 0 0 0 0 exosome 0.500231643921092 0 0.8234144 0.000463287842184856 hm5C_site_3532 DeepMRMD:0.8234144;iRNA_m5C:0.000463287842184856 3533 chr19 57133365 57133365 1 + C T STAD 57133365 + 57133345 57133385 41 CCAGCACGAGCGGATCCACACGGGGGAGAAGCCCTACGCGT CCAGCACGAGCGGATCCACATGGGGGAGAAGCCCTACGCGT Direct Loss 0.962313050763511 0 0.93869126 0 prediction 0.924626101527022 Functional Loss - ZNF71 ENSG00000197951 CDS Human protein_coding chr19:57133365 chr19:57133365 nonsynonymous SNV 0.038 3 21 hm5C_associated_SNPs_48213 0 0 0 0 0 exosome 0.500231469479851 0 0.87738252 0.000462938959702397 hm5C_site_3533 DeepMRMD:0.87738252;iRNA_m5C:0.000462938959702397 3534 chr16 68941412 68941412 1 + C T LUAD 68941412 + 68941392 68941432 41 CAGGGCCGGGTGGAGCATCTCGGGGACTTGCTGTCCCACTG CAGGGCCGGGTGGAGCATCTTGGGGACTTGCTGTCCCACTG Direct Loss 0.962304108695033 0 0.9534515 0 prediction 0.924608217390065 Functional Loss - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68941412 chr16:68941412 synonymous SNV . 0 21 hm5C_associated_SNPs_48214 0 0 0 0 2 Nucleus 0.500231643921176 0 0.906903 0.000463287842352056 hm5C_site_3534 DeepMRMD:0.906903;iRNA_m5C:0.000463287842352056 3535 chrX 47083076 47083076 1 + C T STAD 47083076 + 47083056 47083096 41 GATGAGAGTGGTGGTGGTGGCGGCAGTGACCCTGGAGAGGC GATGAGAGTGGTGGTGGTGGTGGCAGTGACCCTGGAGAGGC Direct Loss 0.96229933572443 0 0.5938233 0 prediction 0.924598671448859 Functional Loss - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47083076 chrX:47083076 synonymous SNV . 0 21 hm5C_associated_SNPs_48215 0 0 1 0 1 Ribosome 0.500231643943088 0 0.1876466 0.000463287886176111 hm5C_site_3535 DeepMRMD:0.1876466;iRNA_m5C:0.000463287886176111 3536 chrX 136648907 136648907 1 + C T UCEC 136648907 + 136648887 136648927 41 GGGCTGGGAGTGGGCAGCTTCGGCGCGCCGCGCCACCACGA GGGCTGGGAGTGGGCAGCTTTGGCGCGCCGCGCCACCACGA Direct Loss 0.962298719546978 0 0.906101 0 prediction 0.924597439093955 Functional Loss - ZIC3 ENSG00000156925 CDS Human protein_coding chrX:136648907 chrX:136648907 synonymous SNV . 0 21 hm5C_associated_SNPs_48216 0 0 0 0 0 exosome 0.500231643921092 0 0.812202 0.000463287842184856 hm5C_site_3536 DeepMRMD:0.812202;iRNA_m5C:0.000463287842184856 3537 chr15 24921425 24921425 1 + C T SKCM 24921425 + 24921405 24921445 41 CGTGAGCCGGCGGTCAAGGCCAGGAAGCCCATCCCAGCCAC CGTGAGCCGGCGGTCAAGGCTAGGAAGCCCATCCCAGCCAC Direct Loss 0.962298011149781 0 0.8861487 0 prediction 0.924596022299563 Functional Loss - NPAP1 ENSG00000185823 CDS Human protein_coding chr15:24921425 chr15:24921425 synonymous SNV . 0 21 hm5C_associated_SNPs_48217 0 0 0 0 0 Nucleus 0.500231645704607 0 0.7722974 0.000463291409214639 hm5C_site_3537 DeepMRMD:0.7722974;iRNA_m5C:0.000463291409214639 3538 chrX 13621517 13621517 1 + C T LUSC 13621517 + 13621497 13621537 41 ACAGTGCCTGTGTCCATCCTCAGGACTCCGCCTGGCCCCAA ACAGTGCCTGTGTCCATCCTTAGGACTCCGCCTGGCCCCAA Direct Loss 0.962294296293172 0 0.89852476 0 prediction 0.924588592586344 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13621517 chrX:13621517 nonsynonymous SNV 0.420 1 21 hm5C_associated_SNPs_48218 0 0 0 0 2 exosome 0.500231643921092 0 0.79704952 0.000463287842184856 hm5C_site_3538 DeepMRMD:0.79704952;iRNA_m5C:0.000463287842184856 3539 chr7 8008678 8008678 1 + C T rs144431436 8008678 + 8008658 8008698 41 TTGCCCTGTCAGCACGATGCCTGGAGCGGTGGCGGCGGCGG TTGCCCTGTCAGCACGATGCTTGGAGCGGTGGCGGCGGCGG Direct Loss 0.962284193820075 0 0.4568522 0 prediction 0.924568387640151 Functional Loss - GLCCI1 ENSG00000233108 ncRNA_intronic Human antisense chr7:8008678 chr7:8008678 . . 0 21 hm5C_associated_SNPs_48219 0 0 1 0 0 Ribosome 0.500231638507718 0 0 0.000463277015436248 hm5C_site_3539 DeepMRMD:0;iRNA_m5C:0.000463277015436248 3540 chrX 30260295 30260295 1 + C T LGG 30260295 + 30260275 30260315 41 AGCTCCGTGCCCGTGAGAAACGCCAGCGGACCCGTGGTCAG AGCTCCGTGCCCGTGAGAAATGCCAGCGGACCCGTGGTCAG Direct Loss 0.962275794774575 0 0.80336964 0 prediction 0.92455158954915 Functional Loss - MAGEB4 ENSG00000120289 CDS Human protein_coding chrX:30260295 chrX:30260295 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_48220 0 0 0 0 0 Nucleus 0.500231643921093 0 0.60673928 0.000463287842186633 hm5C_site_3540 DeepMRMD:0.60673928;iRNA_m5C:0.000463287842186633 3541 chr11 7110655 7110655 1 + C T STAD 7110655 + 7110635 7110675 41 GCCCGCCGCCTCCCCGCAGCCGCGGTCGCCCGAGGTTCCTG GCCCGCCGCCTCCCCGCAGCTGCGGTCGCCCGAGGTTCCTG Direct Loss 0.962273337737239 0 0.5982407 0 prediction 0.924546675474478 Functional Loss - RBMXL2 ENSG00000170748 CDS Human protein_coding chr11:7110655 chr11:7110655 nonsynonymous SNV 0.011 1 21 hm5C_associated_SNPs_48221 0 0 0 0 0 exosome 0.500231625343145 0 0.1964814 0.000463250686290051 hm5C_site_3541 DeepMRMD:0.1964814;iRNA_m5C:0.000463250686290051 3542 chr12 105724454 105724454 1 + C G rs561328243 105724454 + 105724434 105724474 41 CGGGCGGGGCGGGGCCGGGGCGAGGGGTGCCGGGTGGTTTC CGGGCGGGGCGGGGCCGGGGGGAGGGGTGCCGGGTGGTTTC Direct Loss 0.962263889645858 0 0.92443454 0 prediction 0.924527779291716 Functional Loss - C12orf75 ENSG00000235162 UTR5 Human protein_coding chr12:105724454 chr12:105724454 . . 0 21 hm5C_associated_SNPs_48222 0 0 0 0 0 Cytosol 0.500231730312016 0 0.84886908 0.000463460624032574 hm5C_site_3542 DeepMRMD:0.84886908;iRNA_m5C:0.000463460624032574 3543 chr9 91150635 91150635 1 + C T rs577696896 91150635 + 91150615 91150655 41 CCTGGCTGGCGCTGCCCTTCCACGACCCCTACCGGCAGTGA CCTGGCTGGCGCTGCCCTTCTACGACCCCTACCGGCAGTGA Direct Loss 0.962261558583896 0 0.23245716 0 prediction 0.924523117167791 Functional Loss - NXNL2 ENSG00000130045 CDS Human protein_coding chr9:91150635 chr9:91150635 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_48223 0 0 0 0 1 Nucleus 0.500229254051719 0 0 0.000458508103437172 hm5C_site_3543 DeepMRMD:0;iRNA_m5C:0.000458508103437172 3544 chr11 67186589 67186589 1 + C T UCEC 67186589 + 67186569 67186609 41 ACAAGCCGCCGGGGCTGCTGCGGGGAGGGGATGCCAGCCTA ACAAGCCGCCGGGGCTGCTGTGGGGAGGGGATGCCAGCCTA Direct Loss 0.962247355030981 0 0.9073011 0 prediction 0.924494710061962 Functional Loss - CARNS1 ENSG00000172508 CDS Human protein_coding chr11:67186589 chr11:67186589 nonsynonymous SNV 0.178 0 21 hm5C_associated_SNPs_48224 0 0 0 0 0 exosome 0.500231643921092 0 0.8146022 0.000463287842184856 hm5C_site_3544 DeepMRMD:0.8146022;iRNA_m5C:0.000463287842184856 3545 chr17 7324499 7324499 1 + C T COAD 7324499 + 7324479 7324519 41 GGACCTGGGTTCCCTGGTCTCAGGATGCCCCAGAGTCCCCT GGACCTGGGTTCCCTGGTCTTAGGATGCCCCAGAGTCCCCT Direct Loss 0.962236552046364 0 0.95357674 0 prediction 0.924473104092728 Functional Loss - SPEM1 ENSG00000181323 CDS Human protein_coding chr17:7324499 chr17:7324499 stopgain 0.023 0 21 hm5C_associated_SNPs_48225 0 0 1 0 0 exosome 0.500231894648914 0 0.90715348 0.000463789297827644 hm5C_site_3545 DeepMRMD:0.90715348;iRNA_m5C:0.000463789297827644 3546 chr16 76668909 76668909 1 + C T rs13334653 76668909 + 76668889 76668929 41 GGCCACAAAGCGCTTGCAGCCGGGAGCTGCGCGGCCGCGCT GGCCACAAAGCGCTTGCAGCTGGGAGCTGCGCGGCCGCGCT Direct Loss 0.962222379632751 0 0.92475533 0 prediction 0.924444759265503 Functional Loss - LINC02125 ENSG00000250514 ncRNA_exonic Human lincRNA chr16:76668909 chr16:76668909 . . 0 21 hm5C_associated_SNPs_48226 0 0 0 0 0 unknown 0.500231643921219 0 0.84951066 0.000463287842437987 hm5C_site_3546 DeepMRMD:0.84951066;iRNA_m5C:0.000463287842437987 3547 chr9 91150520 91150520 1 + C T STAD 91150520 + 91150500 91150540 41 TTCTATACGGCGCTGGTGGCCGAGGCGCGGCGGCCCGCGCC TTCTATACGGCGCTGGTGGCTGAGGCGCGGCGGCCCGCGCC Direct Loss 0.962217826869939 0 0.8937367 0 prediction 0.924435653739879 Functional Loss - NXNL2 ENSG00000130045 CDS Human protein_coding chr9:91150520 chr9:91150520 synonymous SNV . 0 21 hm5C_associated_SNPs_48227 0 0 0 0 0 Nucleus 0.500231643921033 0 0.7874734 0.00046328784206584 hm5C_site_3547 DeepMRMD:0.7874734;iRNA_m5C:0.00046328784206584 3548 chr14 101341414 101341414 1 + C T SKCM 101341414 + 101341394 101341434 41 ACCCAGGACTCTTTCATGACCAGGAGGCTGAGGCCCCTCAC ACCCAGGACTCTTTCATGACTAGGAGGCTGAGGCCCCTCAC Direct Loss 0.962214182985319 0 0.86068326 0 prediction 0.924428365970638 Functional Loss - MIR665 ENSG00000272291 ncRNA_exonic Human other chr14:101341414 chr14:101341414 . . 0 21 hm5C_associated_SNPs_48228 0 0 1 0 0 unknown 0.500231643921093 0 0.72136652 0.000463287842185744 hm5C_site_3548 DeepMRMD:0.72136652;iRNA_m5C:0.000463287842185744 3549 chr8 103572819 103572819 1 + C T BRCA 103572819 + 103572799 103572839 41 AGGTATGTGTGTCGGCTGAGCGGGAGAACAGGTACGACTGC AGGTATGTGTGTCGGCTGAGTGGGAGAACAGGTACGACTGC Direct Loss 0.962205304879812 0 0.9301508 0 prediction 0.924410609759624 Functional Loss - ODF1 ENSG00000155087 CDS Human protein_coding chr8:103572819 chr8:103572819 nonsynonymous SNV 0.950 5 21 hm5C_associated_SNPs_48229 0 0 0 0 0 unknown 0.500230103674509 0 0.8603016 0.000460207349018527 hm5C_site_3549 DeepMRMD:0.8603016;iRNA_m5C:0.000460207349018527 3550 chr11 92702974 92702974 1 + C T UCEC 92702974 + 92702954 92702994 41 CTGGTCGGGGGCTGGCAGCGCGCGGCCCTCCAGGACCCCTC CTGGTCGGGGGCTGGCAGCGTGCGGCCCTCCAGGACCCCTC Direct Loss 0.962194455694681 0 0.8858055 0 prediction 0.924388911389361 Functional Loss - MTNR1B ENSG00000134640 CDS Human protein_coding chr11:92702974 chr11:92702974 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48230 0 0 0 0 0 unknown 0.500231643921148 0 0.771611 0.000463287842296545 hm5C_site_3550 DeepMRMD:0.771611;iRNA_m5C:0.000463287842296545 3551 chr10 82363484 82363484 1 + C T STAD 82363484 + 82363464 82363504 41 AGCTTGGCCAGAGCCATGAGCAGGAGGCAAGACTCTACCAC AGCTTGGCCAGAGCCATGAGTAGGAGGCAAGACTCTACCAC Direct Loss 0.962193225656853 0 0.9123554 0 prediction 0.924386451313706 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82363484 chr10:82363484 stopgain 0.519 0 21 hm5C_associated_SNPs_48231 0 0 0 0 1 exosome 0.500231643690489 0 0.8247108 0.000463287380977784 hm5C_site_3551 DeepMRMD:0.8247108;iRNA_m5C:0.000463287380977784 3552 chr16 5128804 5128804 1 + C T CESC 5128804 + 5128784 5128824 41 AGCGGTCGGCCTTCACGGAGCGGGATGCTGGGAGCGGGCTG AGCGGTCGGCCTTCACGGAGTGGGATGCTGGGAGCGGGCTG Direct Loss 0.962185902116323 0 0.89709693 0 prediction 0.924371804232645 Functional Loss - ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128804 chr16:5128804 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_48232 0 0 1 0 2 Ribosome 0.500231643566358 0 0.79419386 0.00046328713271615 hm5C_site_3552 DeepMRMD:0.79419386;iRNA_m5C:0.00046328713271615 3553 chr8 59059312 59059312 1 + C T UCEC 59059312 + 59059292 59059332 41 CGCAGGGCCGCAGGAGCCCGCAGGAGGGCGGCTCCCACGTG CGCAGGGCCGCAGGAGCCCGTAGGAGGGCGGCTCCCACGTG Direct Loss 0.962181816766147 0 0.8919362 0 prediction 0.924363633532295 Functional Loss - FAM110B ENSG00000169122 CDS Human protein_coding chr8:59059312 chr8:59059312 stopgain 0.995 0 21 hm5C_associated_SNPs_48233 0 0 0 0 0 Cytosol 0.500231643921095 0 0.7838724 0.000463287842189297 hm5C_site_3553 DeepMRMD:0.7838724;iRNA_m5C:0.000463287842189297 3554 chr16 74339290 74339290 1 + C A UCEC 74339290 + 74339270 74339310 41 TTCTGGATATCAGGAGCTACCTGGAAAAAGTCGCCACAGGC TTCTGGATATCAGGAGCTACATGGAAAAAGTCGCCACAGGC Direct Loss 0.962180695490449 0 0.52190477 0 prediction 0.924361390980897 Functional Loss - PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74339290 chr16:74339290 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_48234 0 0 1 0 0 Ribosome 0.500231640250496 0 0.04380954 0.000463280500992758 hm5C_site_3554 DeepMRMD:0.04380954;iRNA_m5C:0.000463280500992758 3555 chr2 114257055 114257055 1 + C T SKCM 114257055 + 114257035 114257075 41 GCGCTTCCCCGAGAGCACATCGAGGGCGGCGGCCCGAGCGA GCGCTTCCCCGAGAGCACATTGAGGGCGGCGGCCCGAGCGA Direct Loss 0.962146650095644 0 0.9386301 0 prediction 0.924293300191287 Functional Loss - FOXD4L1 ENSG00000184492 CDS Human protein_coding chr2:114257055 chr2:114257055 synonymous SNV . 0 21 hm5C_associated_SNPs_48235 0 0 0 0 0 exosome 0.500231645037305 0 0.8772602 0.000463290074610212 hm5C_site_3555 DeepMRMD:0.8772602;iRNA_m5C:0.000463290074610212 3556 chr10 64564963 64564963 1 + C T HNSC 64564963 + 64564943 64564983 41 CCGATGCAGCCGGGCTTCCCCGAGAACCTGAGCAAGCTGAA CCGATGCAGCCGGGCTTCCCTGAGAACCTGAGCAAGCTGAA Direct Loss 0.962106649938472 0 0.8751986 0 prediction 0.924213299876943 Functional Loss - ADO ENSG00000181915 CDS Human protein_coding chr10:64564963 chr10:64564963 synonymous SNV . 0 21 hm5C_associated_SNPs_48236 0 0 1 0 0 exosome 0.500231643921092 0 0.7503972 0.000463287842184856 hm5C_site_3556 DeepMRMD:0.7503972;iRNA_m5C:0.000463287842184856 3557 chr7 129096476 129096476 1 + C T SKCM 129096476 + 129096456 129096496 41 GCTGCGAGGCCGCCGTGGCTCTCGAAGGGTATGGACTGAAG GCTGCGAGGCCGCCGTGGCTTTCGAAGGGTATGGACTGAAG Direct Loss 0.962097090831395 0 0.9035437 0 prediction 0.924194181662791 Functional Loss - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129096476 chr7:129096476 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48237 0 0 1 0 0 Nucleus 0.500231643921092 0 0.8070874 0.000463287842184856 hm5C_site_3557 DeepMRMD:0.8070874;iRNA_m5C:0.000463287842184856 3558 chr5 50685493 50685493 1 + C T SKCM 50685493 + 50685473 50685513 41 CCCGCAGCGGAGCCCATCTCCGCCAGGCAGCCAGCCCTGCG CCCGCAGCGGAGCCCATCTCTGCCAGGCAGCCAGCCCTGCG Direct Loss 0.96209643595621 0 0.6730525 0 prediction 0.92419287191242 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685493 chr5:50685493 synonymous SNV . 0 21 hm5C_associated_SNPs_48238 0 0 0 0 1 exosome 0.500231643921092 0 0.346105 0.000463287842184856 hm5C_site_3558 DeepMRMD:0.346105;iRNA_m5C:0.000463287842184856 3559 chr19 16791316 16791316 1 + C T SKCM 16791316 + 16791296 16791336 41 GTGGTGCGAGTCCGCAAGATCGCGGTGGGCATCCATCACGC GTGGTGCGAGTCCGCAAGATTGCGGTGGGCATCCATCACGC Direct Loss 0.962090704406356 0 0.8948993 0 prediction 0.924181408812711 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16791316 chr19:16791316 synonymous SNV . 0 21 hm5C_associated_SNPs_48239 0 0 1 0 1 Ribosome 0.500231644043659 0 0.7897986 0.000463288087317437 hm5C_site_3559 DeepMRMD:0.7897986;iRNA_m5C:0.000463288087317437 3560 chr1 32092459 32092459 1 + C G BRCA 32092459 + 32092439 32092479 41 GCCTGGGTCCCTGCGGCTCTCTGAAGGCCCCTAGTCCCCGC GCCTGGGTCCCTGCGGCTCTGTGAAGGCCCCTAGTCCCCGC Direct Loss 0.962082629051317 0 0.562256 0 prediction 0.924165258102633 Functional Loss - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32092459 chr1:32092459 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_48240 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0 0.124512 0.000463287842184856 hm5C_site_3560 DeepMRMD:0.124512;iRNA_m5C:0.000463287842184856 3561 chrX 82763671 82763671 1 + C T LUSC 82763671 + 82763651 82763691 41 CACACTAACCACCCCAACGCCTGGGGGGCCAGCCCGGCACC CACACTAACCACCCCAACGCTTGGGGGGCCAGCCCGGCACC Direct Loss 0.96207596143018 0 0.9079254 0 prediction 0.924151922860359 Functional Loss - POU3F4 ENSG00000196767 CDS Human protein_coding chrX:82763671 chrX:82763671 synonymous SNV . 0 21 hm5C_associated_SNPs_48241 0 0 0 0 0 unknown 0.500231643921092 0 0.8158508 0.000463287842184856 hm5C_site_3561 DeepMRMD:0.8158508;iRNA_m5C:0.000463287842184856 3562 chr6 7404697 7404697 1 + C T PAAD 7404697 + 7404677 7404717 41 AGTTATCAGAATCCAAGGCTCGGGAGTTGTACCTGCAGGTC AGTTATCAGAATCCAAGGCTTGGGAGTTGTACCTGCAGGTC Direct Loss 0.96206530092788 0 0.9155021 0 prediction 0.924130601855759 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7404697 chr6:7404697 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_48242 0 0 1 0 2 Ribosome 0.500231641849632 0 0.8310042 0.000463283699264627 hm5C_site_3562 DeepMRMD:0.8310042;iRNA_m5C:0.000463283699264627 3563 chr11 63283815 63283815 1 + C T BLCA 63283815 + 63283795 63283835 41 AGCAGGCCCTGGAGCAGCTGCGGGAGCTCCGGATCAGTGGA AGCAGGCCCTGGAGCAGCTGTGGGAGCTCCGGATCAGTGGA Direct Loss 0.962063710431899 0 0.92589694 0 prediction 0.924127420863797 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63283815 chr11:63283815 nonsynonymous SNV 0.985 3 21 hm5C_associated_SNPs_48243 0 0 0 0 1 exosome 0.500231655533594 0 0.85179388 0.000463311067187888 hm5C_site_3563 DeepMRMD:0.85179388;iRNA_m5C:0.000463311067187888 3564 chr5 2755256 2755256 1 + C A BLCA 2755256 + 2755236 2755276 41 GGCTCGGGCTCGGGGTCTCCCCGGGGACGCGGCCGACTGAG GGCTCGGGCTCGGGGTCTCCACGGGGACGCGGCCGACTGAG Direct Loss 0.962059095062334 0 0.9455204 0 prediction 0.924118190124667 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2755256 chr5:2755256 synonymous SNV . 0 21 hm5C_associated_SNPs_48244 0 0 0 0 0 exosome 0.500231485940345 0 0.8910408 0.000462971880690777 hm5C_site_3564 DeepMRMD:0.8910408;iRNA_m5C:0.000462971880690777 3565 chr15 76075376 76075376 1 + C T rs189205250 76075376 + 76075356 76075396 41 AGCAGGAGGAGTGGAGGGTGCGGGAGCAGGAGAGACTGTGT AGCAGGAGGAGTGGAGGGTGTGGGAGCAGGAGAGACTGTGT Direct Loss 0.962051771604373 0 0.901454 0 prediction 0.924103543208745 Functional Loss - MIR4313;UBE2Q2 ENSG00000187812 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:76075376 chr15:76075376 . . 0 21 hm5C_associated_SNPs_48245 0 0 0 0 0 unknown 0.500231643841224 0 0.802908 0.000463287682447966 hm5C_site_3565 DeepMRMD:0.802908;iRNA_m5C:0.000463287682447966 3566 chr1 41483484 41483484 1 + C A UCEC 41483484 + 41483464 41483504 41 AGGCCGCTGTCCTCTACTCCCACGAGCAGGCTGCCGCCCTC AGGCCGCTGTCCTCTACTCCAACGAGCAGGCTGCCGCCCTC Direct Loss 0.962045425983213 0 0.6069005 0 prediction 0.924090851966425 Functional Loss - SLFNL1 ENSG00000171790 CDS Human protein_coding chr1:41483484 chr1:41483484 synonymous SNV . 0 21 hm5C_associated_SNPs_48246 0 0 1 0 0 Endoplasmic reticulum 0.500231643925765 0 0.213801 0.000463287851529604 hm5C_site_3566 DeepMRMD:0.213801;iRNA_m5C:0.000463287851529604 3567 chr8 146278037 146278037 1 + C T UCEC 146278037 + 146278017 146278057 41 GGTACTCCCTGCGCGTCCCGCGGAGCCCGGCTTCCCGGCCC GGTACTCCCTGCGCGTCCCGTGGAGCCCGGCTTCCCGGCCC Direct Loss 0.962015283798507 0 0.92782533 0 prediction 0.924030567597014 Functional Loss - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278037 chr8:146278037 synonymous SNV . 0 21 hm5C_associated_SNPs_48247 0 0 1 0 1 Ribosome 0.500231643921092 0 0.85565066 0.000463287842184856 hm5C_site_3567 DeepMRMD:0.85565066;iRNA_m5C:0.000463287842184856 3568 chr3 16254142 16254142 1 + C T SKCM 16254142 + 16254122 16254162 41 TAGGACACATCTACCAAAATCAGGATTCCCATTCCCCCCTC TAGGACACATCTACCAAAATTAGGATTCCCATTCCCCCCTC Direct Loss 0.962010810547334 0 0.933649 0 prediction 0.924021621094668 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16254142 chr3:16254142 stopgain 0.006 0 21 hm5C_associated_SNPs_48248 0 0 0 0 1 exosome 0.500231643923892 0 0.867298 0.000463287847784599 hm5C_site_3568 DeepMRMD:0.867298;iRNA_m5C:0.000463287847784599 3569 chr20 36932679 36932679 1 + C T OV 36932679 + 36932659 36932699 41 GCGTCCCTGATGGTGCTGGTCGCCATAGGCACCGCCGTGAC GCGTCCCTGATGGTGCTGGTTGCCATAGGCACCGCCGTGAC Direct Loss 0.962008673228826 0 0.89912975 0 prediction 0.924017346457652 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36932679 chr20:36932679 synonymous SNV . 0 21 hm5C_associated_SNPs_48249 0 0 0 0 1 Nucleus 0.500231643909933 0 0.7982595 0.000463287819866487 hm5C_site_3569 DeepMRMD:0.7982595;iRNA_m5C:0.000463287819866487 3570 chr12 4919215 4919215 1 + C T CESC 4919215 + 4919195 4919235 41 CCTCCGAGGGGGCATGAGATCGGAGAAATCCCTTACGCTGG CCTCCGAGGGGGCATGAGATTGGAGAAATCCCTTACGCTGG Direct Loss 0.962007321878239 0 0.8931546 0 prediction 0.924014643756477 Functional Loss - KCNA6 ENSG00000151079 CDS Human protein_coding chr12:4919215 chr12:4919215 nonsynonymous SNV 0.967 2 21 hm5C_associated_SNPs_48250 0 0 0 0 0 exosome 0.500231643921092 0 0.7863092 0.000463287842184856 hm5C_site_3570 DeepMRMD:0.7863092;iRNA_m5C:0.000463287842184856 3571 chr6 24423221 24423221 1 + C T COAD 24423221 + 24423201 24423241 41 TTCATGGGAAGTGGCCTCATCTGGAGGCGCCTGCTTTCATT TTCATGGGAAGTGGCCTCATTTGGAGGCGCCTGCTTTCATT Direct Loss 0.961998448278465 0 0.8809952 0 prediction 0.923996896556931 Functional Loss - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423221 chr6:24423221 synonymous SNV . 0 21 hm5C_associated_SNPs_48251 0 0 1 0 2 Ribosome 0.500231643921093 0 0.7619904 0.0004632878421853 hm5C_site_3571 DeepMRMD:0.7619904;iRNA_m5C:0.0004632878421853 3572 chr11 6292339 6292339 1 + C A STAD 6292339 + 6292319 6292359 41 TTCCACGTTCCCGGCCTGCCCTGGAGCTGACGGCGCTGACG TTCCACGTTCCCGGCCTGCCATGGAGCTGACGGCGCTGACG Direct Loss 0.961989521041258 0 0.8463511 0 prediction 0.923979042082515 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292339 chr11:6292339 nonsynonymous SNV 0.015 0 21 hm5C_associated_SNPs_48252 0 0 0 0 1 unknown 0.500231645844893 0 0.6927022 0.000463291689786427 hm5C_site_3572 DeepMRMD:0.6927022;iRNA_m5C:0.000463291689786427 3573 chr7 73609590 73609590 1 + C T CESC 73609590 + 73609570 73609610 41 AATCCCAACTCTGCTATCTTCGGGGGTGCCAGGCCTAGAGA AATCCCAACTCTGCTATCTTTGGGGGTGCCAGGCCTAGAGA Direct Loss 0.961976766045304 0 0.96414495 0 prediction 0.923953532090608 Functional Loss - EIF4H ENSG00000106682 CDS Human protein_coding chr7:73609590 chr7:73609590 synonymous SNV . 0 21 hm5C_associated_SNPs_48253 0 0 1 0 1 Ribosome 0.500231661186945 0 0.9282899 0.000463322373890573 hm5C_site_3573 DeepMRMD:0.9282899;iRNA_m5C:0.000463322373890573 3574 chr12 81101735 81101735 1 + C T OV 81101735 + 81101715 81101755 41 TGCCCCGGCCAGTGTCTGATCTGGGCTTGCAAGACCTGCAA TGCCCCGGCCAGTGTCTGATTTGGGCTTGCAAGACCTGCAA Direct Loss 0.961965382352467 0 0.39500323 0 prediction 0.923930764704934 Functional Loss - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81101735 chr12:81101735 synonymous SNV . 0 21 hm5C_associated_SNPs_48254 0 0 0 0 0 unknown 0.500231643921229 0 0 0.000463287842458415 hm5C_site_3574 DeepMRMD:0;iRNA_m5C:0.000463287842458415 3575 chr19 50979695 50979695 1 + C T rs373779997 50979695 + 50979675 50979715 41 GGGTGCCAGTGCGCAGGTGCCGGGGCCCAGCGCAGGCGCAC GGGTGCCAGTGCGCAGGTGCTGGGGCCCAGCGCAGGCGCAC Direct Loss 0.961957446562364 0 0.8984674 0 prediction 0.923914893124729 Functional Loss - FAM71E1 ENSG00000142530;ENSG00000161671 UTR5 Human other chr19:50979695 chr19:50979695 . . 0 21 hm5C_associated_SNPs_48255 0 0 0 0 0 exosome 0.500231560849812 0 0.7969348 0.000463121699623592 hm5C_site_3575 DeepMRMD:0.7969348;iRNA_m5C:0.000463121699623592 3576 chr16 55360387 55360387 1 + C T HNSC 55360387 + 55360367 55360407 41 ACTGCTGGGCAGTGCGCGACCGGAGCTGGGCGCCGCCTTGG ACTGCTGGGCAGTGCGCGACTGGAGCTGGGCGCCGCCTTGG Direct Loss 0.961955183619516 0 0.91675186 0 prediction 0.923910367239031 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360387 chr16:55360387 nonsynonymous SNV 0.630 3 21 hm5C_associated_SNPs_48256 0 0 0 0 0 exosome 0.500231643921092 0 0.83350372 0.000463287842184856 hm5C_site_3576 DeepMRMD:0.83350372;iRNA_m5C:0.000463287842184856 3577 chr22 29694812 29694812 1 + C T BLCA 29694812 + 29694792 29694832 41 GCTTCCCTCCAAGAGGACCCCGGGGTTCCCGAGGGAACCCC GCTTCCCTCCAAGAGGACCCTGGGGTTCCCGAGGGAACCCC Direct Loss 0.961946068381485 0 0.86720204 0 prediction 0.92389213676297 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29694812 chr22:29694812 nonsynonymous SNV 0.846 3 21 hm5C_associated_SNPs_48257 0 0 1 0 2 Cytosol 0.500231643921092 0 0.73440408 0.000463287842184856 hm5C_site_3577 DeepMRMD:0.73440408;iRNA_m5C:0.000463287842184856 3578 chr9 79635212 79635212 1 + C T GBM 79635212 + 79635192 79635232 41 CCTCAGCAGCCGTCTCACCCCGGCAAGATGCAGGAGGCGGC CCTCAGCAGCCGTCTCACCCTGGCAAGATGCAGGAGGCGGC Direct Loss 0.961944863916149 0 0.38312608 0 prediction 0.923889727832298 Functional Loss - FOXB2 ENSG00000204612 CDS Human protein_coding chr9:79635212 chr9:79635212 synonymous SNV . 0 21 hm5C_associated_SNPs_48258 0 0 0 0 0 unknown 0.500231643936677 0 0 0.000463287873353924 hm5C_site_3578 DeepMRMD:0;iRNA_m5C:0.000463287873353924 3579 chr4 3446132 3446132 1 + C G rs1987546 3446132 + 3446112 3446152 41 GTGGAACAGTGCGAGTGCTTCGGGGGCCGGACCTGGTGCGA GTGGAACAGTGCGAGTGCTTGGGGGGCCGGACCTGGTGCGA Direct Loss 0.961937183689968 0 0.9261302 0 prediction 0.923874367379936 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446132 chr4:3446132 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48259 0 0 1 0 2 cytosol 0.500231643920876 0 0.8522604 0.000463287841751203 hm5C_site_3579 DeepMRMD:0.8522604;iRNA_m5C:0.000463287841751203 3580 chr7 45928356 45928356 1 + C A LUSC 45928356 + 45928336 45928376 41 CAGTGCGCGCCCTGCTCCGCCGAGAAGCTCGCGCTCTGCCC CAGTGCGCGCCCTGCTCCGCAGAGAAGCTCGCGCTCTGCCC Direct Loss 0.961914794703468 0 0.58907515 0 prediction 0.923829589406936 Functional Loss - IGFBP1 ENSG00000146678 CDS Human protein_coding chr7:45928356 chr7:45928356 synonymous SNV . 0 21 hm5C_associated_SNPs_48260 0 0 1 0 0 nucleus 0.50023164391996 0 0.1781503 0.000463287839919779 hm5C_site_3580 DeepMRMD:0.1781503;iRNA_m5C:0.000463287839919779 3581 chr3 113344967 113344967 1 + C T GBM 113344967 + 113344947 113344987 41 AGGGAACTCCGGCCGAATCCCGGGAGAAGAACCGCGAGTGC AGGGAACTCCGGCCGAATCCTGGGAGAAGAACCGCGAGTGC Direct Loss 0.961905903148444 0 0.93156517 0 prediction 0.923811806296888 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113344967 chr3:113344967 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_48261 0 0 0 0 2 exosome 0.50023164393016 0 0.86313034 0.000463287860320127 hm5C_site_3581 DeepMRMD:0.86313034;iRNA_m5C:0.000463287860320127 3582 chr3 128628943 128628943 1 + C T ESCA 128628943 + 128628923 128628963 41 TGGCATGACGGCCGTGCTGTCGCGGGCCAGCCGCTCCATCC TGGCATGACGGCCGTGCTGTTGCGGGCCAGCCGCTCCATCC Direct Loss 0.961870478312577 0 0.9345932 0 prediction 0.923740956625155 Functional Loss - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128628943 chr3:128628943 nonsynonymous SNV 0.042 5 21 hm5C_associated_SNPs_48262 0 0 0 0 2 Endoplasmic reticulum 0.500231643913017 0 0.8691864 0.00046328782603311 hm5C_site_3582 DeepMRMD:0.8691864;iRNA_m5C:0.00046328782603311 3583 chr9 35736451 35736451 1 + C A UCEC 35736451 + 35736431 35736471 41 ACCAGCTGGAGCTGCCTGCCCTGCAGTCAGAAGTGCCGAAA ACCAGCTGGAGCTGCCTGCCATGCAGTCAGAAGTGCCGAAA Direct Loss 0.961859084592168 0 0.16481301 0 prediction 0.923718169184335 Functional Loss - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35736451 chr9:35736451 nonsynonymous SNV 0.516 2 21 hm5C_associated_SNPs_48263 0 0 1 0 0 Endoplasmic reticulum 0.500232364745312 0 0 0.000464729490623927 hm5C_site_3583 DeepMRMD:0;iRNA_m5C:0.000464729490623927 3584 chrX 55478845 55478845 1 + C T ESCA 55478845 + 55478825 55478865 41 GAGTCGGCGCCGCCGTAATGCGAGAGCCGCAGAAGAGAACC GAGTCGGCGCCGCCGTAATGTGAGAGCCGCAGAAGAGAACC Direct Loss 0.961850165460235 0 0.8188763 0 prediction 0.92370033092047 Functional Loss - MAGEH1 ENSG00000187601 CDS Human protein_coding chrX:55478845 chrX:55478845 nonsynonymous SNV 0.681 2 21 hm5C_associated_SNPs_48264 0 0 0 0 0 exosome 0.50023163943718 0 0.6377526 0.000463278874359707 hm5C_site_3584 DeepMRMD:0.6377526;iRNA_m5C:0.000463278874359707 3585 chr2 158115029 158115029 1 + C T rs150509830 158115029 + 158115009 158115049 41 CCTAACAAGCAGAAGACAGACGGGAGAGGCACCAAACCTGA CCTAACAAGCAGAAGACAGATGGGAGAGGCACCAAACCTGA Direct Loss 0.961832715781637 0 0.66576123 0 prediction 0.923665431563274 Functional Loss - GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158115029 chr2:158115029 synonymous SNV . 0 21 hm5C_associated_SNPs_48265 0 0 1 0 0 Exosome 0.500231643921092 0 0.33152246 0.000463287842184856 hm5C_site_3585 DeepMRMD:0.33152246;iRNA_m5C:0.000463287842184856 3586 chr12 7067094 7067094 1 + C T UCEC 7067094 + 7067074 7067114 41 CGGCTTAGGGAGACCTGATTCGGGAGATCTGGCATTACCAG CGGCTTAGGGAGACCTGATTTGGGAGATCTGGCATTACCAG Direct Loss 0.961825136482369 0 0.96406525 0 prediction 0.923650272964737 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7067094 chr12:7067094 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_48266 0 0 0 0 1 chromatin 0.500231643921491 0 0.9281305 0.000463287842981774 hm5C_site_3586 DeepMRMD:0.9281305;iRNA_m5C:0.000463287842981774 3587 chr13 28498646 28498646 1 + C T SKCM 28498646 + 28498626 28498666 41 GCTGTCGGGGGTGGCGGGGTCGCGGAGCCTGAGCAGGACTG GCTGTCGGGGGTGGCGGGGTTGCGGAGCCTGAGCAGGACTG Direct Loss 0.961821190743235 0 0.89899004 0 prediction 0.92364238148647 Functional Loss - PDX1 ENSG00000139515 CDS Human protein_coding chr13:28498646 chr13:28498646 synonymous SNV . 0 21 hm5C_associated_SNPs_48267 0 0 0 0 0 exosome 0.500231578829101 0 0.79798008 0.000463157658202151 hm5C_site_3587 DeepMRMD:0.79798008;iRNA_m5C:0.000463157658202151 3588 chr19 46998642 46998642 1 + C A LUSC 46998642 + 46998622 46998662 41 TCTGCCTGCTCCAGGCCCTCCGGGATGCCGGTGACCAGCAG TCTGCCTGCTCCAGGCCCTCAGGGATGCCGGTGACCAGCAG Direct Loss 0.961809850256173 0 0.8973832 0 prediction 0.923619700512346 Functional Loss - PNMA8B ENSG00000204851 CDS Human protein_coding chr19:46998642 chr19:46998642 synonymous SNV . 0 21 hm5C_associated_SNPs_48268 0 0 0 0 0 unknown 0.500231643921098 0 0.7947664 0.00046328784219507 hm5C_site_3588 DeepMRMD:0.7947664;iRNA_m5C:0.00046328784219507 3589 chr17 72346991 72346991 1 + C T rs184071429 72346991 + 72346971 72347011 41 CACCCGAGGTGGCCGCAGCCCGGGAGAGCATTGCAGCCCTG CACCCGAGGTGGCCGCAGCCTGGGAGAGCATTGCAGCCCTG Direct Loss 0.961807562820101 0 0.89705795 0 prediction 0.923615125640202 Functional Loss - KIF19 ENSG00000196169;ENSG00000268626 CDS Human other chr17:72346991 chr17:72346991 nonsynonymous SNV 0.162 0 21 hm5C_associated_SNPs_48269 0 0 0 0 1 exosome 0.500231643570737 0 0.7941159 0.000463287141474256 hm5C_site_3589 DeepMRMD:0.7941159;iRNA_m5C:0.000463287141474256 3590 chr11 22363146 22363146 1 + C T LGG 22363146 + 22363126 22363166 41 GGGAAGCCCCTAGAGGTGCCCGAGAGGAAGGCGCCGCTGTG GGGAAGCCCCTAGAGGTGCCTGAGAGGAAGGCGCCGCTGTG Direct Loss 0.96180411110799 0 0.87898713 0 prediction 0.92360822221598 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363146 chr11:22363146 synonymous SNV . 0 21 hm5C_associated_SNPs_48270 0 0 0 0 0 unknown 0.500231643908932 0 0.75797426 0.000463287817864089 hm5C_site_3590 DeepMRMD:0.75797426;iRNA_m5C:0.000463287817864089 3591 chr16 57758610 57758610 1 + C T UCEC 57758610 + 57758590 57758630 41 GTGTGGATGGCCTGATGAAGCGGGAGGAGACACCCAGGACA GTGTGGATGGCCTGATGAAGTGGGAGGAGACACCCAGGACA Direct Loss 0.961802737684623 0 0.9124189 0 prediction 0.923605475369246 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57758610 chr16:57758610 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_48271 0 0 0 0 1 cytosol 0.500231644092203 0 0.8248378 0.000463288184406885 hm5C_site_3591 DeepMRMD:0.8248378;iRNA_m5C:0.000463288184406885 3592 chrX 15693873 15693873 1 + C T rs190788254 15693873 + 15693853 15693893 41 CGTGCGGGATCCTCGGGTACCGGGAGCGAACGAGGAGGTTC CGTGCGGGATCCTCGGGTACTGGGAGCGAACGAGGAGGTTC Direct Loss 0.961801166467661 0 0.92021734 0 prediction 0.923602332935321 Functional Loss - CA5BP1 ENSG00000186312 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:15693873 chrX:15693873 . . 0 21 hm5C_associated_SNPs_48272 0 0 1 0 2 unknown 0.500351707877314 0 0.84043468 0.000703415754628844 hm5C_site_3592 DeepMRMD:0.84043468;iRNA_m5C:0.000703415754628844 3593 chr13 113976660 113976660 1 + C T UCEC 113976660 + 113976640 113976680 41 CGCTGTGGGTGGTGCCCTGGCGGGGCTGGTCCTCATCGTCC CGCTGTGGGTGGTGCCCTGGTGGGGCTGGTCCTCATCGTCC Direct Loss 0.961800918318583 0 0.92941344 0 prediction 0.923601836637165 Functional Loss - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113976660 chr13:113976660 nonsynonymous SNV 0.983 3 21 hm5C_associated_SNPs_48273 0 0 1 0 1 Cytosol 0.500223279559221 0 0.85882688 0.000446559118442824 hm5C_site_3593 DeepMRMD:0.85882688;iRNA_m5C:0.000446559118442824 3594 chr16 90097731 90097731 1 + C A UCEC 90097731 + 90097711 90097751 41 AGGAGCATGTCAGCCGCATCCGGGAGGAGCTGGACCGCGAG AGGAGCATGTCAGCCGCATCAGGGAGGAGCTGGACCGCGAG Direct Loss 0.961798726076807 0 0.9236071 0 prediction 0.923597452153615 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90097731 chr16:90097731 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_48274 0 0 1 0 1 Ribosome 0.500231664234432 0 0.8472142 0.000463328468863322 hm5C_site_3594 DeepMRMD:0.8472142;iRNA_m5C:0.000463328468863322 3595 chr17 57643053 57643053 1 + C G HNSC 57643053 + 57643033 57643073 41 ATGTCCCGGTTTCCCGCAGTCGCGGGCAGGGCGCCAAGGCG ATGTCCCGGTTTCCCGCAGTGGCGGGCAGGGCGCCAAGGCG Direct Loss 0.961795542189457 0 0.68484676 0 prediction 0.923591084378914 Functional Loss - DHX40 ENSG00000108406 CDS Human protein_coding chr17:57643053 chr17:57643053 synonymous SNV . 0 21 hm5C_associated_SNPs_48275 0 0 1 0 1 Ribosome 0.500231643921092 0 0.36969352 0.000463287842184856 hm5C_site_3595 DeepMRMD:0.36969352;iRNA_m5C:0.000463287842184856 3596 chr1 226027611 226027611 1 + C T GBM 226027611 + 226027591 226027631 41 CTCCTCCTGGGACAGCGTTTCGGGAGGTTTCTTGGCCTCAC CTCCTCCTGGGACAGCGTTTTGGGAGGTTTCTTGGCCTCAC Direct Loss 0.961794499046137 0 0.955202 0 prediction 0.923588998092275 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226027611 chr1:226027611 synonymous SNV . 0 21 hm5C_associated_SNPs_48276 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0 0.910404 0.000463287842184856 hm5C_site_3596 DeepMRMD:0.910404;iRNA_m5C:0.000463287842184856 3597 chr16 81774135 81774135 1 + C G rs189270362 81774135 + 81774115 81774155 41 GCAGGCAGATCGCCTGAAGTCGGGAGTTTGAGACCAGCCTG GCAGGCAGATCGCCTGAAGTGGGGAGTTTGAGACCAGCCTG Direct Loss 0.961789652274458 0 0.9288429 0 prediction 0.923579304548916 Functional Loss - CMIP;PLCG2 ENSG00000261218 ncRNA_exonic Human lincRNA chr16:81774135 chr16:81774135 . . 0 21 hm5C_associated_SNPs_48277 0 0 0 0 1 unknown 0.500231643923332 0 0.8576858 0.00046328784666394 hm5C_site_3597 DeepMRMD:0.8576858;iRNA_m5C:0.00046328784666394 3598 chr14 105398121 105398121 1 + C T PRAD 105398121 + 105398101 105398141 41 TCTGTCCCCAGGGCCGCACCCGGGACCTGGAGGCGCTGCTG TCTGTCCCCAGGGCCGCACCTGGGACCTGGAGGCGCTGCTG Direct Loss 0.961778771815727 0 0.93154407 0 prediction 0.923557543631454 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105398121 chr14:105398121 nonsynonymous SNV 0.338 0 21 hm5C_associated_SNPs_48278 0 0 0 0 1 exosome 0.500231678774372 0 0.86308814 0.00046335754874316 hm5C_site_3598 DeepMRMD:0.86308814;iRNA_m5C:0.00046335754874316 3599 chr5 176085109 176085109 1 + C A rs565552232 176085109 + 176085089 176085129 41 GCTGGAAGCCATGGGACTGGCGGGAGCCTGTTTGGGGGATC GCTGGAAGCCATGGGACTGGAGGGAGCCTGTTTGGGGGATC Direct Loss 0.961772198056672 0 0.89615846 0 prediction 0.923544396113344 Functional Loss - TSPAN17 ENSG00000048140 UTR3 Human protein_coding chr5:176085109 chr5:176085109 . . 0 21 hm5C_associated_SNPs_48279 0 0 1 0 0 Endoplasmic reticulum 0.500231640269213 0 0.79231692 0.000463280538425259 hm5C_site_3599 DeepMRMD:0.79231692;iRNA_m5C:0.000463280538425259 3600 chr9 140130499 140130499 1 + C T UCEC 140130499 + 140130479 140130519 41 ATCCCGCTGGCCAGGCACTTCGGGGTGGTGACCGCCCGTTA ATCCCGCTGGCCAGGCACTTTGGGGTGGTGACCGCCCGTTA Direct Loss 0.961749805253121 0 0.9369482 0 prediction 0.923499610506241 Functional Loss - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140130499 chr9:140130499 synonymous SNV . 0 21 hm5C_associated_SNPs_48280 0 0 0 0 1 exosome 0.500231643921092 0 0.8738964 0.000463287842184856 hm5C_site_3600 DeepMRMD:0.8738964;iRNA_m5C:0.000463287842184856 3601 chr15 41102889 41102889 1 + C A rs533156538 41102889 + 41102869 41102909 41 GGACCCAAGCCCAGCAGACACAGGATCTGCTAACGCAGCTG GGACCCAAGCCCAGCAGACAAAGGATCTGCTAACGCAGCTG Direct Loss 0.961724510614416 0 0.79883146 0 prediction 0.923449021228832 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41102889 chr15:41102889 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_48281 0 0 1 0 2 Ribosome 0.500235856085806 0 0.59766292 0.000471712171612237 hm5C_site_3601 DeepMRMD:0.59766292;iRNA_m5C:0.000471712171612237 3602 chr11 77301362 77301362 1 + C T STAD 77301362 + 77301342 77301382 41 GCGTGATGATGCAGATGATGCTGGGGGGCATGTCCCCCGAG GCGTGATGATGCAGATGATGTTGGGGGGCATGTCCCCCGAG Direct Loss 0.961686145508006 0 0.90601414 0 prediction 0.923372291016012 Functional Loss - AQP11 ENSG00000178301 CDS Human protein_coding chr11:77301362 chr11:77301362 synonymous SNV . 0 21 hm5C_associated_SNPs_48282 0 0 1 0 0 Ribosome 0.500231643915555 0 0.81202828 0.000463287831109938 hm5C_site_3602 DeepMRMD:0.81202828;iRNA_m5C:0.000463287831109938 3603 chr14 70924319 70924319 1 + C A SKCM 70924319 + 70924299 70924339 41 ACTGTCAGGCTGGGCCCTCCCAGCATTTCACTTCCCCGGAA ACTGTCAGGCTGGGCCCTCCAAGCATTTCACTTCCCCGGAA Direct Loss 0.961685968989414 0 0.25350925 0 prediction 0.923371937978828 Functional Loss - ADAM21 ENSG00000139985 CDS Human protein_coding chr14:70924319 chr14:70924319 nonsynonymous SNV 0.015 0 21 hm5C_associated_SNPs_48283 0 0 0 0 0 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3603 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3604 chr17 80439027 80439027 1 + C T BLCA 80439027 + 80439007 80439047 41 ACAAGAAGCTGGAGGCTCTTCAGGAAAGCCTTCCCCCTGCT ACAAGAAGCTGGAGGCTCTTTAGGAAAGCCTTCCCCCTGCT Direct Loss 0.96167984681341 0 0.88317907 0 prediction 0.923359693626819 Functional Loss - NARF ENSG00000141562 CDS Human protein_coding chr17:80439027 chr17:80439027 stopgain 0.894 1 21 hm5C_associated_SNPs_48284 0 0 1 0 1 Cytosol 0.500231643920953 0 0.76635814 0.000463287841906856 hm5C_site_3604 DeepMRMD:0.76635814;iRNA_m5C:0.000463287841906856 3605 chrX 30260327 30260327 1 + C T rs140958735 30260327 + 30260307 30260347 41 CGTGGTCAGACCCAGGATCTCAAGGTTGGTCAGCCTACTGC CGTGGTCAGACCCAGGATCTTAAGGTTGGTCAGCCTACTGC Direct Loss 0.961678916205031 0 0.9015244 0 prediction 0.923357832410062 Functional Loss - MAGEB4 ENSG00000120289 CDS Human protein_coding chrX:30260327 chrX:30260327 synonymous SNV . 0 21 hm5C_associated_SNPs_48285 0 0 0 0 0 Nucleus 0.500231643921092 0 0.8030488 0.000463287842184856 hm5C_site_3605 DeepMRMD:0.8030488;iRNA_m5C:0.000463287842184856 3606 chr2 177016507 177016507 1 + C T COAD 177016507 + 177016487 177016527 41 GGGCGCAGACTTCCAGCCCCCGGGGCTCTACCCACGGCCCG GGGCGCAGACTTCCAGCCCCTGGGGCTCTACCCACGGCCCG Direct Loss 0.961667788965196 0 0.9208581 0 prediction 0.923335577930391 Functional Loss - HOXD4 ENSG00000170166 CDS Human protein_coding chr2:177016507 chr2:177016507 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_48286 0 0 1 0 0 exosome 0.500231643921051 0 0.8417162 0.000463287842102922 hm5C_site_3606 DeepMRMD:0.8417162;iRNA_m5C:0.000463287842102922 3607 chr20 49197851 49197851 1 + C T UCEC 49197851 + 49197831 49197871 41 GGGTCGTGGGGGGAAGTCTTCGAGGTGCCCAGGCTGCCTCC GGGTCGTGGGGGGAAGTCTTTGAGGTGCCCAGGCTGCCTCC Direct Loss 0.961666969267383 0 0.933569 0 prediction 0.923333938534766 Functional Loss - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49197851 chr20:49197851 stopgain 0.004 0 21 hm5C_associated_SNPs_48287 0 0 1 0 1 Ribosome 0.500231643917066 0 0.867138 0.000463287834132631 hm5C_site_3607 DeepMRMD:0.867138;iRNA_m5C:0.000463287834132631 3608 chr10 112838845 112838845 1 + C T STAD 112838845 + 112838825 112838865 41 CGGGACGCCGGCTGCAGGGCCGGGGGAGGAGCGCGTCGGGG CGGGACGCCGGCTGCAGGGCTGGGGGAGGAGCGCGTCGGGG Direct Loss 0.961662888522258 0 0.9141265 0 prediction 0.923325777044516 Functional Loss - ADRA2A ENSG00000150594 CDS Human protein_coding chr10:112838845 chr10:112838845 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48288 0 0 0 0 0 exosome 0.500231672628161 0 0.828253 0.000463345256322523 hm5C_site_3608 DeepMRMD:0.828253;iRNA_m5C:0.000463345256322523 3609 chr2 177017848 177017848 1 + C G rs1063656 177017848 + 177017828 177017868 41 GGGCAGCCCCCTCCCTAGAGCGGGATGGGGATGGGAGGGGG GGGCAGCCCCCTCCCTAGAGGGGGATGGGGATGGGAGGGGG Direct Loss 0.961659409406509 0 0.9006264 0 prediction 0.923318818813017 Functional Loss - HOXD4 ENSG00000170166 UTR3 Human protein_coding chr2:177017848 chr2:177017848 . . 0 21 hm5C_associated_SNPs_48289 0 0 1 0 0 exosome 0.500231643921092 0 0.8012528 0.000463287842184856 hm5C_site_3609 DeepMRMD:0.8012528;iRNA_m5C:0.000463287842184856 3610 chr17 46628524 46628524 1 + G A STAD 46628524 - 46628504 46628544 41 GCAGAGGGCTGTGGTGGCGGCGGCGGTGGCGGCGGCGGCGG GCAGAGGGCTGTGGTGGCGGTGGCGGTGGCGGCGGCGGCGG Direct Loss 0.961651676595876 0 0.9302905 0 prediction 0.923303353191753 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628524 chr17:46628524 synonymous SNV . 0 21 hm5C_associated_SNPs_48290 0 0 0 0 1 Nucleus 0.500231643921092 0 0.860581 0.000463287842184856 hm5C_site_3610 DeepMRMD:0.860581;iRNA_m5C:0.000463287842184856 3611 chr7 154863213 154863213 1 + G A COAD 154863213 - 154863193 154863233 41 GGCGCCTACGGTGGAGAACACGGCGTAGGAAGGCTCGCGGC GGCGCCTACGGTGGAGAACATGGCGTAGGAAGGCTCGCGGC Direct Loss 0.961648336077673 0 0.88763356 0 prediction 0.923296672155345 Functional Loss - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154863213 chr7:154863213 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_48291 0 0 0 0 0 exosome 0.500231643921092 0 0.77526712 0.000463287842184856 hm5C_site_3611 DeepMRMD:0.77526712;iRNA_m5C:0.000463287842184856 3612 chr17 48917397 48917397 1 + C T STAD 48917397 + 48917377 48917417 41 GGGAGAAGCAGTTGGAGGATCGGGAGAATGTGGTCATGCGG GGGAGAAGCAGTTGGAGGATTGGGAGAATGTGGTCATGCGG Direct Loss 0.961626822164608 0 0.9222752 0 prediction 0.923253644329216 Functional Loss - WFIKKN2 ENSG00000173714 CDS Human protein_coding chr17:48917397 chr17:48917397 nonsynonymous SNV 0.912 3 21 hm5C_associated_SNPs_48292 0 0 0 0 0 exosome 0.500247675630764 0 0.8445504 0.000495351261527555 hm5C_site_3612 DeepMRMD:0.8445504;iRNA_m5C:0.000495351261527555 3613 chr19 17972938 17972938 1 + C T UCEC 17972938 + 17972918 17972958 41 CCCCTGCGGGTGAAGAACTTCGGGATCTGGCTGCGCTATGA CCCCTGCGGGTGAAGAACTTTGGGATCTGGCTGCGCTATGA Direct Loss 0.961620774508801 0 0.91427135 0 prediction 0.923241549017603 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972938 chr19:17972938 synonymous SNV . 0 21 hm5C_associated_SNPs_48293 0 0 1 0 2 Cytosol 0.500231643890306 0 0.8285427 0.000463287780612109 hm5C_site_3613 DeepMRMD:0.8285427;iRNA_m5C:0.000463287780612109 3614 chr3 161221606 161221606 1 + C T LAML 161221606 + 161221586 161221626 41 CGTCATCTTGAAATTAAGTGCAGGAGACCAAGTCTGGCTTG CGTCATCTTGAAATTAAGTGTAGGAGACCAAGTCTGGCTTG Direct Loss 0.961606694846166 0 0.9067116 0 prediction 0.923213389692332 Functional Loss - OTOL1 ENSG00000182447 CDS Human protein_coding chr3:161221606 chr3:161221606 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_48294 0 0 0 0 0 exosome 0.500231643918394 0 0.8134232 0.000463287836788284 hm5C_site_3614 DeepMRMD:0.8134232;iRNA_m5C:0.000463287836788284 3615 chr19 36616652 36616652 1 + C T SKCM 36616652 + 36616632 36616672 41 TCGTGACGGTGGGGGACTTCCCGGAGGAGGACTACGGGTTG TCGTGACGGTGGGGGACTTCTCGGAGGAGGACTACGGGTTG Direct Loss 0.961606353800141 0 0.92760265 0 prediction 0.923212707600283 Functional Loss - TBCB ENSG00000105254 CDS Human protein_coding chr19:36616652 chr19:36616652 nonsynonymous SNV 0.764 5 21 hm5C_associated_SNPs_48295 0 0 1 0 0 Ribosome 0.500231643921124 0 0.8552053 0.000463287842248805 hm5C_site_3615 DeepMRMD:0.8552053;iRNA_m5C:0.000463287842248805 3616 chr9 6413449 6413449 1 + C G rs201234807 6413449 + 6413429 6413469 41 GGGGCGCGGCGCCCAGAGCTCAGGGGGAGACAAAGGGGACC GGGGCGCGGCGCCCAGAGCTGAGGGGGAGACAAAGGGGACC Direct Loss 0.961599680393341 0 0.9231361 0 prediction 0.923199360786682 Functional Loss - UHRF2 ENSG00000147854 UTR5 Human protein_coding chr9:6413449 chr9:6413449 . . 0 21 hm5C_associated_SNPs_48296 0 0 1 0 0 Nucleus 0.500231643921092 0 0.8462722 0.000463287842184856 hm5C_site_3616 DeepMRMD:0.8462722;iRNA_m5C:0.000463287842184856 3617 chr18 71825498 71825498 1 + C T UCEC 71825498 + 71825478 71825518 41 GAAGCAAGGAACGGTGTATGCGCAAGTGAAAGAGGTGTGGG GAAGCAAGGAACGGTGTATGTGCAAGTGAAAGAGGTGTGGG Direct Loss 0.961594504543667 0 0.82438874 0 prediction 0.923189009087333 Functional Loss - TIMM21 ENSG00000075336 CDS Human protein_coding chr18:71825498 chr18:71825498 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48297 0 0 1 0 2 Endoplasmic reticulum 0.500231643553709 0 0.64877748 0.000463287107418831 hm5C_site_3617 DeepMRMD:0.64877748;iRNA_m5C:0.000463287107418831 3618 chr4 4861844 4861844 1 + C T rs201156596 4861844 + 4861824 4861864 41 CATGGCCGACCACAGGAAGCCGGGGGCCAAGGAGAGCGCCC CATGGCCGACCACAGGAAGCTGGGGGCCAAGGAGAGCGCCC Direct Loss 0.961592919961587 0 0.90507686 0 prediction 0.923185839923175 Functional Loss - MSX1 ENSG00000163132 CDS Human protein_coding chr4:4861844 chr4:4861844 nonsynonymous SNV 0.982 4 21 hm5C_associated_SNPs_48298 0 0 0 0 0 Cytosol 0.500231643920861 0 0.81015372 0.000463287841721005 hm5C_site_3618 DeepMRMD:0.81015372;iRNA_m5C:0.000463287841721005 3619 chr15 52497266 52497266 1 + C T BRCA 52497266 + 52497246 52497286 41 AGCCGTCCGTGTCGTCTATGCTAGAGGAGCGCTTCCGGAAG AGCCGTCCGTGTCGTCTATGTTAGAGGAGCGCTTCCGGAAG Direct Loss 0.961552376304688 0 0.8480867 0 prediction 0.923104752609377 Functional Loss - MYO5C ENSG00000128833 CDS Human protein_coding chr15:52497266 chr15:52497266 nonsynonymous SNV 0.965 5 21 hm5C_associated_SNPs_48299 0 0 0 0 0 Nucleus 0.500231643919082 0 0.6961734 0.000463287838163184 hm5C_site_3619 DeepMRMD:0.6961734;iRNA_m5C:0.000463287838163184 3620 chr12 6933744 6933744 1 + C T UCEC 6933744 + 6933724 6933764 41 GGGTGGTGGGGGGACCAAAGCGGGTGGGCCAGGGGCCTTGG GGGTGGTGGGGGGACCAAAGTGGGTGGGCCAGGGGCCTTGG Direct Loss 0.961550753922829 0 0.9247277 0 prediction 0.923101507845657 Functional Loss - GPR162 ENSG00000250510 CDS Human protein_coding chr12:6933744 chr12:6933744 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48300 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8494554 0.000463287842184856 hm5C_site_3620 DeepMRMD:0.8494554;iRNA_m5C:0.000463287842184856 3621 chrX 30254096 30254096 1 + C A LUAD 30254096 + 30254076 30254116 41 GTGAGAAACGCCAGCAGACCCGGGGTCAGACCCAGGATCAC GTGAGAAACGCCAGCAGACCAGGGGTCAGACCCAGGATCAC Direct Loss 0.961546562709697 0 0.91531473 0 prediction 0.923093125419393 Functional Loss - MAGEB3 ENSG00000198798 CDS Human protein_coding chrX:30254096 chrX:30254096 synonymous SNV . 0 21 hm5C_associated_SNPs_48301 0 0 0 0 0 unknown 0.500231643902479 0 0.83062946 0.000463287804957746 hm5C_site_3621 DeepMRMD:0.83062946;iRNA_m5C:0.000463287804957746 3622 chr1 152785222 152785222 1 + C A rs200529644 152785222 + 152785202 152785242 41 GGCTGCTGCAGCCAGCCCTCCGGGGGCTCCAGCTGCTGTGG GGCTGCTGCAGCCAGCCCTCAGGGGGCTCCAGCTGCTGTGG Direct Loss 0.961542826323552 0 0.91650784 0 prediction 0.923085652647104 Functional Loss - LCE1B ENSG00000196734 CDS Human protein_coding chr1:152785222 chr1:152785222 synonymous SNV . 0 21 hm5C_associated_SNPs_48302 0 0 0 0 0 unknown 0.500231643921092 0 0.83301568 0.000463287842184856 hm5C_site_3622 DeepMRMD:0.83301568;iRNA_m5C:0.000463287842184856 3623 chrX 147063086 147063086 1 + C A UCEC 147063086 + 147063066 147063106 41 CATGGCTGACAGGCCTCAGCCAGGATGGCGGGAATCTCTAA CATGGCTGACAGGCCTCAGCAAGGATGGCGGGAATCTCTAA Direct Loss 0.961530915640504 0 0.79703933 0 prediction 0.923061831281008 Functional Loss - FMR1NB ENSG00000176988 CDS Human protein_coding chrX:147063086 chrX:147063086 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_48303 0 0 0 0 0 exosome 0.500385597331811 0 0.59407866 0.000771194663621966 hm5C_site_3623 DeepMRMD:0.59407866;iRNA_m5C:0.000771194663621966 3624 chr20 45354005 45354005 1 + C T BLCA 45354005 + 45353985 45354025 41 GGCCGCGCTGTGGTTGGCTTCGCCATTTCCCTCTCCTCCAT GGCCGCGCTGTGGTTGGCTTTGCCATTTCCCTCTCCTCCAT Direct Loss 0.961527323056089 0 0.30954993 0 prediction 0.923054646112178 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45354005 chr20:45354005 synonymous SNV . 0 21 hm5C_associated_SNPs_48304 2 0 1 0 0 Nucleus 0.500233764760137 0 0 0.000467529520274068 hm5C_site_3624 DeepMRMD:0;iRNA_m5C:0.000467529520274068 Arterial tortuosity syndrome Arterial tortuosity syndrome 3625 chr14 103568719 103568719 1 + C A rs563565267 103568719 + 103568699 103568739 41 GCTGGCCCGCGTGGTGAGCGCGGAGGAGGAAGCCCACCCTT GCTGGCCCGCGTGGTGAGCGAGGAGGAGGAAGCCCACCCTT Direct Loss 0.961525510591388 0 0.9075422 0 prediction 0.923051021182776 Functional Loss - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103568719 chr14:103568719 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48305 0 0 1 0 0 cytosol 0.500231643921092 0 0.8150844 0.000463287842184856 hm5C_site_3625 DeepMRMD:0.8150844;iRNA_m5C:0.000463287842184856 3626 chr7 87258169 87258169 1 + C G rs201345739 87258169 + 87258149 87258189 41 CGGAGCCTGGGGGGCCTGAGCGGGATCCGCGGCGGTGGCGG CGGAGCCTGGGGGGCCTGAGGGGGATCCGCGGCGGTGGCGG Direct Loss 0.961507683149913 0 0.9292712 0 prediction 0.923015366299826 Functional Loss - RUNDC3B ENSG00000105784 CDS Human protein_coding chr7:87258169 chr7:87258169 nonsynonymous SNV 0.955 0 21 hm5C_associated_SNPs_48306 0 0 0 0 1 chromatin 0.500231650457735 0 0.8585424 0.000463300915469311 hm5C_site_3626 DeepMRMD:0.8585424;iRNA_m5C:0.000463300915469311 3627 chr2 70315374 70315374 1 + C A READ 70315374 + 70315354 70315394 41 AGCAGATTTGCCTGGTCATGCTGGAGACGCTCTCCCAGTCT AGCAGATTTGCCTGGTCATGATGGAGACGCTCTCCCAGTCT Direct Loss 0.961498453157001 0 0.8797827 0 prediction 0.922996906314002 Functional Loss - PCBP1 ENSG00000169564 CDS Human protein_coding chr2:70315374 chr2:70315374 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48307 0 0 1 0 0 Cytosol 0.500233269592356 0 0.7595654 0.000466539184712289 hm5C_site_3627 DeepMRMD:0.7595654;iRNA_m5C:0.000466539184712289 3628 chr1 207297548 207297548 1 + C T BLCA 207297548 + 207297528 207297568 41 TGTAAGCCTCCTCCAGACATCAGGAATGGAAGGCACAGCGG TGTAAGCCTCCTCCAGACATTAGGAATGGAAGGCACAGCGG Direct Loss 0.961497011885482 0 0.5600424 0 prediction 0.922994023770963 Functional Loss - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207297548 chr1:207297548 synonymous SNV . 0 21 hm5C_associated_SNPs_48308 0 0 0 0 1 Endoplasmic reticulum 0.500231643920964 0 0.1200848 0.000463287841927285 hm5C_site_3628 DeepMRMD:0.1200848;iRNA_m5C:0.000463287841927285 3629 chr5 140590630 140590630 1 + C A LUSC 140590630 + 140590610 140590650 41 GTGCGGCTGTGCAGGAGGAGCAGGGCGGCCCCGGTCGGTCG GTGCGGCTGTGCAGGAGGAGAAGGGCGGCCCCGGTCGGTCG Direct Loss 0.961494974389604 0 0.9228071 0 prediction 0.922989948779208 Functional Loss - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140590630 chr5:140590630 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48309 0 0 0 0 0 exosome 0.50023165025086 0 0.8456142 0.000463300501719166 hm5C_site_3629 DeepMRMD:0.8456142;iRNA_m5C:0.000463300501719166 3630 chr1 223943283 223943283 1 + C G HNSC 223943283 + 223943263 223943303 41 CCTTCCTGGTGGGGCTCATTCAGAAGCACCGACGGCGGCAG CCTTCCTGGTGGGGCTCATTGAGAAGCACCGACGGCGGCAG Direct Loss 0.961482840675793 0 0.9006562 0 prediction 0.922965681351585 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943283 chr1:223943283 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_48310 0 0 1 0 1 Ribosome 0.500231643919058 0 0.8013124 0.000463287838116111 hm5C_site_3630 DeepMRMD:0.8013124;iRNA_m5C:0.000463287838116111 Multiple complex diseases 3631 chr9 21409548 21409548 1 + C T STAD 21409548 + 21409528 21409568 41 ACCTGGAGTCCTGTGTGATGCAGGAAGTGGGGGTGATAGAG ACCTGGAGTCCTGTGTGATGTAGGAAGTGGGGGTGATAGAG Direct Loss 0.961479949430753 0 0.862052 0 prediction 0.922959898861506 Functional Loss - IFNA8 ENSG00000120242 CDS Human protein_coding chr9:21409548 chr9:21409548 stopgain 0.028 0 21 hm5C_associated_SNPs_48311 0 0 0 0 0 unknown 0.500231638466946 0 0.724104 0.000463276933892365 hm5C_site_3631 DeepMRMD:0.724104;iRNA_m5C:0.000463276933892365 3632 chr15 85164374 85164374 1 + C T BRCA 85164374 + 85164354 85164394 41 GAGTGTGGCAAGAGCTTCAGCAGGAGTCCCAACCTCATTGC GAGTGTGGCAAGAGCTTCAGTAGGAGTCCCAACCTCATTGC Direct Loss 0.961475440040621 0 0.9166477 0 prediction 0.922950880081243 Functional Loss - ZSCAN2 ENSG00000176371 CDS Human protein_coding chr15:85164374 chr15:85164374 synonymous SNV . 0 21 hm5C_associated_SNPs_48312 0 0 0 0 0 Nucleus 0.500231644156468 0 0.8332954 0.000463288312935184 hm5C_site_3632 DeepMRMD:0.8332954;iRNA_m5C:0.000463288312935184 3633 chr7 100198307 100198307 1 + C T COAD 100198307 + 100198287 100198327 41 GCCTGGGGGCCAGAGCACCCCAGGACCCCGGGGGGATGGCC GCCTGGGGGCCAGAGCACCCTAGGACCCCGGGGGGATGGCC Direct Loss 0.961472230264459 0 0.90446424 0 prediction 0.922944460528918 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100198307 chr7:100198307 stopgain 0.936 0 21 hm5C_associated_SNPs_48313 0 0 0 0 0 exosome 0.500231643921092 0 0.80892848 0.000463287842184856 hm5C_site_3633 DeepMRMD:0.80892848;iRNA_m5C:0.000463287842184856 3634 chr15 76430211 76430211 1 + C T COAD 76430211 + 76430191 76430231 41 GCTCGCAGCTCCTGTCAAATCTGGACGAAGATTACCAAAGA GCTCGCAGCTCCTGTCAAATTTGGACGAAGATTACCAAAGA Direct Loss 0.961469390084964 0 0.6961022 0 prediction 0.922938780169927 Functional Loss - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76430211 chr15:76430211 synonymous SNV . 0 21 hm5C_associated_SNPs_48314 0 0 0 0 0 Nucleus 0.500181690298957 0 0.3922044 0.000363380597913965 hm5C_site_3634 DeepMRMD:0.3922044;iRNA_m5C:0.000363380597913965 3635 chr2 242814152 242814152 1 + C A LUAD 242814152 + 242814132 242814172 41 GCTGCTGTGAGGCCTGTGAGCTGGGGGTCTGCTTCCTCCAG GCTGCTGTGAGGCCTGTGAGATGGGGGTCTGCTTCCTCCAG Direct Loss 0.961430382598449 0 0.933756 0 prediction 0.922860765196898 Functional Loss - RTP5 ENSG00000188011 CDS Human protein_coding chr2:242814152 chr2:242814152 nonsynonymous SNV 0.006 3 21 hm5C_associated_SNPs_48315 0 0 0 0 0 exosome 0.500231643921096 0 0.867512 0.000463287842191074 hm5C_site_3635 DeepMRMD:0.867512;iRNA_m5C:0.000463287842191074 3636 chr1 204042559 204042559 1 + C T rs560201357 204042559 + 204042539 204042579 41 GGGCAGAGAGCGGCCTGGCTCGGCGGAGAGGGCGCCGCCCG GGGCAGAGAGCGGCCTGGCTTGGCGGAGAGGGCGCCGCCCG Direct Loss 0.961429217168165 0 0.91939986 0 prediction 0.92285843433633 Functional Loss - SOX13 ENSG00000143842 upstream Human protein_coding chr1:204042559 chr1:204042559 . . 0 21 hm5C_associated_SNPs_48316 0 0 0 0 0 nucleus 0.500231645467303 0 0.83879972 0.000463290934605176 hm5C_site_3636 DeepMRMD:0.83879972;iRNA_m5C:0.000463290934605176 3637 chr3 98109943 98109943 1 + C T UCEC 98109943 + 98109923 98109963 41 GACACTCTGCATTCAGATGACTGCAGGAGCCTACCTAGCTG GACACTCTGCATTCAGATGATTGCAGGAGCCTACCTAGCTG Direct Loss 0.961427945400626 0 0.31523943 0 prediction 0.922855890801252 Functional Loss - OR5K3 ENSG00000206536 CDS Human protein_coding chr3:98109943 chr3:98109943 nonsynonymous SNV 0.942 0 21 hm5C_associated_SNPs_48317 0 0 0 0 0 unknown 0.500231643837907 0 0 0.000463287675814827 hm5C_site_3637 DeepMRMD:0;iRNA_m5C:0.000463287675814827 3638 chr12 72148896 72148896 1 + C A rs190327770 72148896 + 72148876 72148916 41 GACACTCGGGCTCGGGCGGCCGGGAAGCGACGGGATGGCTG GACACTCGGGCTCGGGCGGCAGGGAAGCGACGGGATGGCTG Direct Loss 0.961409580456603 0 0.92897785 0 prediction 0.922819160913206 Functional Loss - RAB21 ENSG00000080371 UTR5 Human protein_coding chr12:72148896 chr12:72148896 . . 0 21 hm5C_associated_SNPs_48318 0 0 1 0 0 Ribosome 0.500231614050212 0 0.8579557 0.000463228100423763 hm5C_site_3638 DeepMRMD:0.8579557;iRNA_m5C:0.000463228100423763 3639 chr2 96934237 96934237 1 + C T UCEC 96934237 + 96934217 96934257 41 ATGACACAGTGAAGCTGTACCGGGAGGAAGAGGATGACTGG ATGACACAGTGAAGCTGTACTGGGAGGAAGAGGATGACTGG Direct Loss 0.961408562337819 0 0.9360867 0 prediction 0.922817124675638 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96934237 chr2:96934237 nonsynonymous SNV 0.976 2 21 hm5C_associated_SNPs_48319 0 0 1 0 1 Ribosome 0.500231643922396 0 0.8721734 0.000463287844792992 hm5C_site_3639 DeepMRMD:0.8721734;iRNA_m5C:0.000463287844792992 3640 chr5 157098766 157098766 1 + C T UCEC 157098766 + 157098746 157098786 41 CTCGGCCGCCGCCCAGAAATCGGCGTAGGGGGTCAGCCGCA CTCGGCCGCCGCCCAGAAATTGGCGTAGGGGGTCAGCCGCA Direct Loss 0.961404520184278 0 0.9312324 0 prediction 0.922809040368557 Functional Loss - C5orf52 ENSG00000187658 CDS Human protein_coding chr5:157098766 chr5:157098766 synonymous SNV . 0 21 hm5C_associated_SNPs_48320 0 0 0 0 1 unknown 0.500231643921092 0 0.8624648 0.000463287842184856 hm5C_site_3640 DeepMRMD:0.8624648;iRNA_m5C:0.000463287842184856 3641 chr11 65292585 65292585 1 + C G rs376947297 65292585 + 65292565 65292605 41 GCTCGGGCGGCCGGAGGACCCGGAGCTAAGGCGCCCGAACC GCTCGGGCGGCCGGAGGACCGGGAGCTAAGGCGCCCGAACC Direct Loss 0.961402224652254 0 0.9152256 0 prediction 0.922804449304508 Functional Loss - SCYL1 ENSG00000142186 UTR5 Human protein_coding chr11:65292585 chr11:65292585 . . 0 21 hm5C_associated_SNPs_48321 0 0 1 0 0 Ribosome 0.500231643921093 0 0.8304512 0.000463287842185078 hm5C_site_3641 DeepMRMD:0.8304512;iRNA_m5C:0.000463287842185078 3642 chr5 140615699 140615699 1 + C T UCEC 140615699 + 140615679 140615719 41 CTTTGGACTACGAGGCCCTGCAGGAGTTCGGGTTTCGCGTG CTTTGGACTACGAGGCCCTGTAGGAGTTCGGGTTTCGCGTG Direct Loss 0.961400873517614 0 0.92289996 0 prediction 0.922801747035229 Functional Loss - PCDHB18P ENSG00000146001 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:140615699 chr5:140615699 . . 0 21 hm5C_associated_SNPs_48322 0 0 0 0 0 unknown 0.500231643921092 0 0.84579992 0.000463287842184856 hm5C_site_3642 DeepMRMD:0.84579992;iRNA_m5C:0.000463287842184856 3643 chr11 18158884 18158884 1 + C T LUSC 18158884 + 18158864 18158904 41 CTTGTCGCGCTGACAGGAAACGCGGTTGTGCTCTGGCTCCT CTTGTCGCGCTGACAGGAAATGCGGTTGTGCTCTGGCTCCT Direct Loss 0.96139321393579 0 0.86462057 0 prediction 0.922786427871581 Functional Loss - MRGPRX3 ENSG00000179826 CDS Human protein_coding chr11:18158884 chr11:18158884 synonymous SNV . 0 21 hm5C_associated_SNPs_48323 0 0 0 0 0 exosome 0.500231608162467 0 0.72924114 0.000463216324934734 hm5C_site_3643 DeepMRMD:0.72924114;iRNA_m5C:0.000463216324934734 3644 chr14 24909598 24909598 1 + G T UCEC 24909598 - 24909578 24909618 41 TCAGGCCACCAATTCTTCCCCTGGATACACATCGGGGACCT TCAGGCCACCAATTCTTCCCATGGATACACATCGGGGACCT Direct Loss 0.961390504002417 0 0.18440661 0 prediction 0.922781008004833 Functional Loss - SDR39U1 ENSG00000100445 CDS Human protein_coding chr14:24909598 chr14:24909598 synonymous SNV . 0 21 hm5C_associated_SNPs_48324 0 0 1 0 0 nucleolus 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3644 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3645 chr19 17972996 17972996 1 + C T SKCM 17972996 + 17972976 17973016 41 ACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGC ACAACATGTACCGGGAATACTGGGACCTGACCACCGCAGGC Direct Loss 0.961380541496904 0 0.91992056 0 prediction 0.922761082993809 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972996 chr19:17972996 nonsynonymous SNV 0.989 2 21 hm5C_associated_SNPs_48325 0 0 1 0 2 Cytosol 0.50023164476762 0 0.83984112 0.000463289535240108 hm5C_site_3645 DeepMRMD:0.83984112;iRNA_m5C:0.000463289535240108 3646 chr19 747245 747245 1 + C T rs113424036 747245 + 747225 747265 41 CCAGAGAGGGCCCCGGGAGCCGGGGGTGGGTACTGAGGCCT CCAGAGAGGGCCCCGGGAGCTGGGGGTGGGTACTGAGGCCT Direct Loss 0.961372268517334 0 0.93783295 0 prediction 0.922744537034669 Functional Loss - PALM ENSG00000099864 UTR3 Human protein_coding chr19:747245 chr19:747245 . . 0 21 hm5C_associated_SNPs_48326 0 0 1 0 0 Cytosol 0.500231643921033 0 0.8756659 0.000463287842066062 hm5C_site_3646 DeepMRMD:0.8756659;iRNA_m5C:0.000463287842066062 3647 chr8 75756241 75756241 1 + C T COAD 75756241 + 75756221 75756261 41 GGATGAAAATCTTGCAAAATCGGCAGAGGCTTGGGCGGCTA GGATGAAAATCTTGCAAAATTGGCAGAGGCTTGGGCGGCTA Direct Loss 0.961367852731117 0 0.74296063 0 prediction 0.922735705462234 Functional Loss - PI15 ENSG00000137558 CDS Human protein_coding chr8:75756241 chr8:75756241 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_48327 0 0 1 0 2 exosome 0.500231643915241 0 0.48592126 0.000463287830481107 hm5C_site_3647 DeepMRMD:0.48592126;iRNA_m5C:0.000463287830481107 3648 chr2 135621039 135621039 1 + C T SKCM 135621039 + 135621019 135621059 41 AGCACCGTTGTGAGCTACCCCAGGAGGTTCGTGGGTCTGGG AGCACCGTTGTGAGCTACCCTAGGAGGTTCGTGGGTCTGGG Direct Loss 0.961366277697795 0 0.87548333 0 prediction 0.922732555395591 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135621039 chr2:135621039 synonymous SNV . 0 21 hm5C_associated_SNPs_48328 0 0 0 0 1 nucleus 0.500231643921093 0 0.75096666 0.000463287842185078 hm5C_site_3648 DeepMRMD:0.75096666;iRNA_m5C:0.000463287842185078 3649 chr16 57503125 57503125 1 + C T SKCM 57503125 + 57503105 57503145 41 AGTGCTCGGTGGAGTTCACCCTCGATGTGCGGTGCAATGAA AGTGCTCGGTGGAGTTCACCTTCGATGTGCGGTGCAATGAA Direct Loss 0.961357669032423 0 0.9109592 0 prediction 0.922715338064846 Functional Loss - POLR2C ENSG00000102978 CDS Human protein_coding chr16:57503125 chr16:57503125 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_48329 0 0 1 0 2 Ribosome 0.500231643991387 0 0.8219184 0.000463287982773286 hm5C_site_3649 DeepMRMD:0.8219184;iRNA_m5C:0.000463287982773286 3650 chr14 100705962 100705962 1 + C T CESC 100705962 + 100705942 100705982 41 CTGCGCGCCGAGGACGGCTTCGAGGATCAGATTCTCATCCC CTGCGCGCCGAGGACGGCTTTGAGGATCAGATTCTCATCCC Direct Loss 0.961356275002542 0 0.8964246 0 prediction 0.922712550005085 Functional Loss - YY1 ENSG00000100811 CDS Human protein_coding chr14:100705962 chr14:100705962 synonymous SNV . 0 21 hm5C_associated_SNPs_48330 0 0 1 0 0 Ribosome 0.500231643921086 0 0.7928492 0.000463287842172644 hm5C_site_3650 DeepMRMD:0.7928492;iRNA_m5C:0.000463287842172644 3651 chr3 97983220 97983220 1 + C T STAD 97983220 + 97983200 97983240 41 GCTGACAGAGTTTGTTCTCACAGGATTTTTACATCAACCTG GCTGACAGAGTTTGTTCTCATAGGATTTTTACATCAACCTG Direct Loss 0.961337969758236 0 0.82955265 0 prediction 0.922675939516473 Functional Loss - OR5H6 ENSG00000230301 CDS Human protein_coding chr3:97983220 chr3:97983220 nonsynonymous SNV 0.939 0 21 hm5C_associated_SNPs_48331 0 0 0 0 0 unknown 0.500231648254754 0 0.6591053 0.000463296509507938 hm5C_site_3651 DeepMRMD:0.6591053;iRNA_m5C:0.000463296509507938 3652 chr3 49049964 49049964 1 + C T LUAD 49049964 + 49049944 49049984 41 ACTTGGTAGGGCGTGGGTACCGGGGATTGGGGGTCTCGGCT ACTTGGTAGGGCGTGGGTACTGGGGATTGGGGGTCTCGGCT Direct Loss 0.961337628020181 0 0.9395237 0 prediction 0.922675256040363 Functional Loss - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49049964 chr3:49049964 nonsynonymous SNV 0.088 2 21 hm5C_associated_SNPs_48332 0 0 1 0 0 Nucleus 0.500231643917141 0 0.8790474 0.000463287834282067 hm5C_site_3652 DeepMRMD:0.8790474;iRNA_m5C:0.000463287834282067 Systemic lupus erythematosus 3653 chr4 81123265 81123265 1 + C G LUAD 81123265 + 81123245 81123285 41 AAGACCAGCAGCAGCAGCAGCAGGAGGCACCTTTAGGCCCG AAGACCAGCAGCAGCAGCAGGAGGAGGCACCTTTAGGCCCG Direct Loss 0.961335484275043 0 0.9075123 0 prediction 0.922670968550086 Functional Loss - PRDM8 ENSG00000152784 CDS Human protein_coding chr4:81123265 chr4:81123265 nonsynonymous SNV 0.766 0 21 hm5C_associated_SNPs_48333 0 0 0 0 0 exosome 0.500231643921373 0 0.8150246 0.000463287842746851 hm5C_site_3653 DeepMRMD:0.8150246;iRNA_m5C:0.000463287842746851 3654 chr14 37132628 37132628 1 + C T rs373446060 37132628 + 37132608 37132648 41 GCCAAGGTGCCCACGCCACCCGGGGTGCCTGCCATCCCCGG GCCAAGGTGCCCACGCCACCTGGGGTGCCTGCCATCCCCGG Direct Loss 0.961322063293681 0 0.9396744 0 prediction 0.922644126587361 Functional Loss - PAX9 ENSG00000198807 CDS Human protein_coding chr14:37132628 chr14:37132628 synonymous SNV . 0 21 hm5C_associated_SNPs_48334 0 0 1 0 0 chromatin 0.500231643921092 0 0.8793488 0.000463287842184856 hm5C_site_3654 DeepMRMD:0.8793488;iRNA_m5C:0.000463287842184856 3655 chr1 77987593 77987593 1 + C T UCEC 77987593 + 77987573 77987613 41 TCCTGATTGACGGCTATCCTCGGGAGGTGAAGCAAGGGGAA TCCTGATTGACGGCTATCCTTGGGAGGTGAAGCAAGGGGAA Direct Loss 0.961317512096695 0 0.9313928 0 prediction 0.92263502419339 Functional Loss - AK5 ENSG00000154027 CDS Human protein_coding chr1:77987593 chr1:77987593 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_48335 0 0 0 0 1 Nucleus 0.500231643921092 0 0.8627856 0.000463287842184856 hm5C_site_3655 DeepMRMD:0.8627856;iRNA_m5C:0.000463287842184856 3656 chr5 111755616 111755616 1 + C T rs373413661 111755616 + 111755596 111755636 41 CTTCAGGACATTCAGCAAAGCGGGGAGGCGGGGACCTGCGG CTTCAGGACATTCAGCAAAGTGGGGAGGCGGGGACCTGCGG Direct Loss 0.961311694694175 0 0.8917068 0 prediction 0.92262338938835 Functional Loss - EPB41L4A-AS2 ENSG00000268358 CDS Human other chr5:111755616 chr5:111755616 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_48336 0 0 0 0 0 unknown 0.500231643921092 0 0.7834136 0.000463287842184856 hm5C_site_3656 DeepMRMD:0.7834136;iRNA_m5C:0.000463287842184856 3657 chr12 130648614 130648614 1 + C T UCEC 130648614 + 130648594 130648634 41 CCTGGTCATGCGCAGGGTGGCGGGGGACGAGCTCACCGGGG CCTGGTCATGCGCAGGGTGGTGGGGGACGAGCTCACCGGGG Direct Loss 0.961296175073426 0 0.9426467 0 prediction 0.922592350146851 Functional Loss - FZD10 ENSG00000111432 CDS Human protein_coding chr12:130648614 chr12:130648614 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_48337 0 0 0 0 0 exosome 0.500231643921092 0 0.8852934 0.000463287842184856 hm5C_site_3657 DeepMRMD:0.8852934;iRNA_m5C:0.000463287842184856 3658 chr19 8953670 8953670 1 + C A UCEC 8953670 + 8953650 8953690 41 GTTACACAGGTGGATCTCTGCTGGAGGATCTTGCCAGTGGT GTTACACAGGTGGATCTCTGATGGAGGATCTTGCCAGTGGT Direct Loss 0.961288074101747 0 0.8436347 0 prediction 0.922576148203494 Functional Loss - MBD3L1 ENSG00000170948 CDS Human protein_coding chr19:8953670 chr19:8953670 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48338 0 0 0 0 0 nucleus 0.500231654376492 0 0.6872694 0.000463308752984393 hm5C_site_3658 DeepMRMD:0.6872694;iRNA_m5C:0.000463308752984393 3659 chr11 111411631 111411631 1 + C T COAD 111411631 + 111411611 111411651 41 CTGCTGGTGGGGCTGCGGGCCGCGACGGGTCGCCTGCTGAG CTGCTGGTGGGGCTGCGGGCTGCGACGGGTCGCCTGCTGAG Direct Loss 0.961281778104537 0 0.4717675 0 prediction 0.922563556209074 Functional Loss - LAYN ENSG00000204381 CDS Human protein_coding chr11:111411631 chr11:111411631 synonymous SNV . 0 21 hm5C_associated_SNPs_48339 0 0 0 0 1 exosome 0.500231643923446 0 0 0.000463287846891758 hm5C_site_3659 DeepMRMD:0;iRNA_m5C:0.000463287846891758 3660 chr6 74073424 74073424 1 + C T READ 74073424 + 74073404 74073444 41 TCGGTGGAAGTCCAGGAGGTCGGGACACAGGGTTCTCCGGT TCGGTGGAAGTCCAGGAGGTTGGGACACAGGGTTCTCCGGT Direct Loss 0.961254462901249 0 0.9067028 0 prediction 0.922508925802497 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74073424 chr6:74073424 synonymous SNV . 0 21 hm5C_associated_SNPs_48340 0 0 0 0 0 unknown 0.500231643460565 0 0.8134056 0.000463286921130956 hm5C_site_3660 DeepMRMD:0.8134056;iRNA_m5C:0.000463286921130956 3661 chr6 110301179 110301179 1 + C A BLCA 110301179 + 110301159 110301199 41 GCTGTGGTGCTGGGCACTTTCGGCGCCAGCTGGCTGCCCTT GCTGTGGTGCTGGGCACTTTAGGCGCCAGCTGGCTGCCCTT Direct Loss 0.961240086443462 0 0.9386337 0 prediction 0.922480172886924 Functional Loss - GPR6 ENSG00000146360 CDS Human protein_coding chr6:110301179 chr6:110301179 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_48341 0 0 0 0 0 unknown 0.500231643262551 0 0.8772674 0.000463286525101081 hm5C_site_3661 DeepMRMD:0.8772674;iRNA_m5C:0.000463286525101081 3662 chr10 54074743 54074743 1 + C T OV 54074743 + 54074723 54074763 41 AGTACTGCGCTAGTCCCACCCGCGGAGGGGACGCAGGCGTG AGTACTGCGCTAGTCCCACCTGCGGAGGGGACGCAGGCGTG Direct Loss 0.961236283466084 0 0.68537784 0 prediction 0.922472566932167 Functional Loss - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074743 chr10:54074743 nonsynonymous SNV 0.556 2 21 hm5C_associated_SNPs_48342 0 0 1 0 1 exosome 0.50023164392111 0 0.37075568 0.000463287842219273 hm5C_site_3662 DeepMRMD:0.37075568;iRNA_m5C:0.000463287842219273 3663 chr17 38975353 38975353 1 + G A SKCM 38975353 - 38975333 38975373 41 GGCTACGGCGGCGGAAGCTCCGGCGGCGGAAGCTCCGGCGG GGCTACGGCGGCGGAAGCTCTGGCGGCGGAAGCTCCGGCGG Direct Loss 0.96123405279446 0 0.9177871 0 prediction 0.92246810558892 Functional Loss - KRT10 ENSG00000186395 CDS Human protein_coding chr17:38975353 chr17:38975353 synonymous SNV . 0 21 hm5C_associated_SNPs_48343 0 0 0 0 1 Ribosome 0.500231643921092 0 0.8355742 0.000463287842184856 hm5C_site_3663 DeepMRMD:0.8355742;iRNA_m5C:0.000463287842184856 3664 chrX 51075979 51075979 1 + C T COAD 51075979 + 51075959 51075999 41 CCGGGCGGGGGCATGGAGCCCGAGGAGGAGCCGGGCGGTGC CCGGGCGGGGGCATGGAGCCTGAGGAGGAGCCGGGCGGTGC Direct Loss 0.961228144088791 0 0.8706148 0 prediction 0.922456288177581 Functional Loss - NUDT10 ENSG00000122824 CDS Human protein_coding chrX:51075979 chrX:51075979 synonymous SNV . 0 21 hm5C_associated_SNPs_48344 0 0 0 0 0 exosome 0.500231644156458 0 0.7412296 0.00046328831291631 hm5C_site_3664 DeepMRMD:0.7412296;iRNA_m5C:0.00046328831291631 3665 chr4 73012903 73012903 1 + C A LUAD 73012903 + 73012883 73012923 41 GCCGGGAAGACTGGCCAAATCAGGAAATGAGGAAGATCTAC GCCGGGAAGACTGGCCAAATAAGGAAATGAGGAAGATCTAC Direct Loss 0.961223475584246 0 0.9223455 0 prediction 0.922446951168492 Functional Loss - NPFFR2 ENSG00000056291 CDS Human protein_coding chr4:73012903 chr4:73012903 nonsynonymous SNV 0.009 0 21 hm5C_associated_SNPs_48345 0 0 0 0 0 nucleoplasm 0.500231643920992 0 0.844691 0.000463287841984794 hm5C_site_3665 DeepMRMD:0.844691;iRNA_m5C:0.000463287841984794 3666 chr1 27657266 27657266 1 + C T UCEC 27657266 + 27657246 27657286 41 GCACATCCACAGGAGTCATTCGGGACTTCGCGGGCCCCTAC GCACATCCACAGGAGTCATTTGGGACTTCGCGGGCCCCTAC Direct Loss 0.961206744944379 0 0.93953514 0 prediction 0.922413489888759 Functional Loss - TMEM222 ENSG00000186501 CDS Human protein_coding chr1:27657266 chr1:27657266 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_48346 0 0 1 0 2 Ribosome 0.500231643921062 0 0.87907028 0.000463287842123572 hm5C_site_3666 DeepMRMD:0.87907028;iRNA_m5C:0.000463287842123572 3667 chr10 122216841 122216841 1 + C T rs192701942 122216841 + 122216821 122216861 41 CGGGAGCTGGCCATTGAGATCGGGGTGCGAGCCCTGCTCTT CGGGAGCTGGCCATTGAGATTGGGGTGCGAGCCCTGCTCTT Direct Loss 0.961203144847127 0 0.95472896 0 prediction 0.922406289694254 Functional Loss - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122216841 chr10:122216841 synonymous SNV . 0 21 hm5C_associated_SNPs_48347 0 0 0 0 1 Cytosol 0.500231643921037 0 0.90945792 0.000463287842073168 hm5C_site_3667 DeepMRMD:0.90945792;iRNA_m5C:0.000463287842073168 3668 chr19 52954615 52954615 1 + C T COAD 52954615 + 52954595 52954635 41 TCGCTTGGCGATGCAAAACGCGCGAGGCTCACGGCAGAGGG TCGCTTGGCGATGCAAAACGTGCGAGGCTCACGGCAGAGGG Direct Loss 0.961194143296047 0 0.344742 0 prediction 0.922388286592094 Functional Loss - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52954615 chr19:52954615 synonymous SNV . 0 21 hm5C_associated_SNPs_48348 0 0 0 0 0 exosome 0.500231643921076 0 0 0.00046328784215155 hm5C_site_3668 DeepMRMD:0;iRNA_m5C:0.00046328784215155 3669 chr14 59105188 59105188 1 + C T rs2003021 59105188 + 59105168 59105208 41 CGCCCCGCGCTGGGGAGCTACTGGGGGAGGCGGCGCAGCGC CGCCCCGCGCTGGGGAGCTATTGGGGGAGGCGGCGCAGCGC Direct Loss 0.961176507650474 0 0.9360118 0 prediction 0.922353015300947 Functional Loss - DACT1 ENSG00000165617 CDS Human protein_coding chr14:59105188 chr14:59105188 synonymous SNV . 0 21 hm5C_associated_SNPs_48349 0 0 0 0 1 exosome 0.500231643921092 0 0.8720236 0.000463287842184856 hm5C_site_3669 DeepMRMD:0.8720236;iRNA_m5C:0.000463287842184856 3670 chr19 36631958 36631958 1 + C G LGG 36631958 + 36631938 36631978 41 AAGGGCGGCGGCGGCGGCGGCGGGGGAGGCGGGGGCCTGGG AAGGGCGGCGGCGGCGGCGGGGGGGGAGGCGGGGGCCTGGG Direct Loss 0.961176138066778 0 0.93225265 0 prediction 0.922352276133556 Functional Loss - CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36631958 chr19:36631958 synonymous SNV . 0 21 hm5C_associated_SNPs_48350 0 0 1 0 2 Ribosome 0.500231643916375 0 0.8645053 0.000463287832750181 hm5C_site_3670 DeepMRMD:0.8645053;iRNA_m5C:0.000463287832750181 3671 chr17 6927434 6927434 1 + C T UCEC 6927434 + 6927414 6927454 41 TTCAATTTTCCGGGGCCGTGCGGGAGTCGGGGTGGACGTGC TTCAATTTTCCGGGGCCGTGTGGGAGTCGGGGTGGACGTGC Direct Loss 0.961171044903228 0 0.9395505 0 prediction 0.922342089806457 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927434 chr17:6927434 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_48351 0 0 0 0 1 Endoplasmic reticulum 0.500231648367064 0 0.879101 0.000463296734128704 hm5C_site_3671 DeepMRMD:0.879101;iRNA_m5C:0.000463296734128704 3672 chr19 17430861 17430861 1 + C T rs144729786 17430861 + 17430841 17430881 41 CCGGGCGACAGGGGCGGGCCCGGGGTGGCCTGACCTACCAG CCGGGCGACAGGGGCGGGCCTGGGGTGGCCTGACCTACCAG Direct Loss 0.961164200480412 0 0.92058885 0 prediction 0.922328400960825 Functional Loss - DDA1 ENSG00000130311 UTR3 Human protein_coding chr19:17430861 chr19:17430861 . . 0 21 hm5C_associated_SNPs_48352 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8411777 0.000463287842184856 hm5C_site_3672 DeepMRMD:0.8411777;iRNA_m5C:0.000463287842184856 3673 chr19 50926238 50926238 1 + C A TGCT 50926238 + 50926218 50926258 41 ACCTCGAACTGGCCCCCAGCCTGGAGGCCCCGGGGCCTGGC ACCTCGAACTGGCCCCCAGCATGGAGGCCCCGGGGCCTGGC Direct Loss 0.961161747225406 0 0.67590624 0 prediction 0.922323494450812 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926238 chr19:50926238 nonsynonymous SNV 0.886 0 21 hm5C_associated_SNPs_48353 0 0 0 0 1 Endoplasmic reticulum 0.500231643921097 0 0.35181248 0.000463287842194182 hm5C_site_3673 DeepMRMD:0.35181248;iRNA_m5C:0.000463287842194182 3674 chr19 38795292 38795292 1 + G A UCEC 38795292 - 38795272 38795312 41 CCGAATCGCTGGAGCTGCTGCTGGAGTCGGAAGAGCTGTGG CCGAATCGCTGGAGCTGCTGTTGGAGTCGGAAGAGCTGTGG Direct Loss 0.961159887926041 0 0.6015922 0 prediction 0.922319775852081 Functional Loss - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795292 chr19:38795292 nonsynonymous SNV 0.995 2 21 hm5C_associated_SNPs_48354 0 0 0 0 0 Ribosome 0.500231643377461 0 0.2031844 0.000463286754922798 hm5C_site_3674 DeepMRMD:0.2031844;iRNA_m5C:0.000463286754922798 3675 chr16 77760642 77760642 1 + C T rs150066529 77760642 + 77760622 77760662 41 AGGCGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCGCTC AGGCGGAGGTTGCAGTGAGCTGAGATTGTGCCACTGCGCTC Direct Loss 0.961145592992493 0 0.8836526 0 prediction 0.922291185984985 Functional Loss - NUDT7 ENSG00000140876 intronic Human protein_coding chr16:77760642 chr16:77760642 . . 0 21 hm5C_associated_SNPs_48355 0 0 0 0 0 nucleoplasm 0.499833804563212 0 0.7673052 0 hm5C_site_3675 DeepMRMD:0.7673052;iRNA_m5C:0 3676 chr12 53663123 53663123 1 + C T BLCA 53663123 + 53663103 53663143 41 CCTGCTTGGTGCAGTGCTCTCGCGAGGCTGCTCCCCAGGAC CCTGCTTGGTGCAGTGCTCTTGCGAGGCTGCTCCCCAGGAC Direct Loss 0.961134295703414 0 0.9590254 0 prediction 0.922268591406829 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663123 chr12:53663123 nonsynonymous SNV 0.913 1 21 hm5C_associated_SNPs_48356 0 0 1 0 0 Nucleus 0.500231643927788 0 0.9180508 0.000463287855576144 hm5C_site_3676 DeepMRMD:0.9180508;iRNA_m5C:0.000463287855576144 3677 chr16 633554 633554 1 + G A COAD 633554 - 633534 633574 41 GGGCCCGGGCCCGCTGGGGACGGGGGTCAGCGACTGCTTCA GGGCCCGGGCCCGCTGGGGATGGGGGTCAGCGACTGCTTCA Direct Loss 0.961128399026942 0 0.91747886 0 prediction 0.922256798053883 Functional Loss - PIGQ ENSG00000007541 CDS Human protein_coding chr16:633554 chr16:633554 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48357 0 0 0 0 0 Ribosome 0.500231643921133 0 0.83495772 0.000463287842266791 hm5C_site_3677 DeepMRMD:0.83495772;iRNA_m5C:0.000463287842266791 3678 chr5 50683330 50683330 1 + C T LUSC 50683330 + 50683310 50683350 41 CCTCCCCCGCACAGGTTGTACGGGATCAAATGCGCCAAGTG CCTCCCCCGCACAGGTTGTATGGGATCAAATGCGCCAAGTG Direct Loss 0.961115229903259 0 0.86295384 0 prediction 0.922230459806518 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683330 chr5:50683330 synonymous SNV . 0 21 hm5C_associated_SNPs_48358 0 0 0 0 1 exosome 0.50023164392108 0 0.72590768 0.000463287842159765 hm5C_site_3678 DeepMRMD:0.72590768;iRNA_m5C:0.000463287842159765 3679 chr1 231701418 231701418 1 + C T rs192468128 231701418 + 231701398 231701438 41 AGGCAGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACTC AGGCAGAGGTTGCAGTGAGCTGAGATTGCGCCACTGCACTC Direct Loss 0.961114138673545 0 0.9126911 0 prediction 0.92222827734709 Functional Loss - TSNAX-DISC1 ENSG00000116918 UTR3 Human protein_coding chr1:231701418 chr1:231701418 . . 0 21 hm5C_associated_SNPs_48359 0 0 0 0 0 exosome 0.500243865334535 0 0.8253822 0.000487730669069375 hm5C_site_3679 DeepMRMD:0.8253822;iRNA_m5C:0.000487730669069375 3680 chr11 7110628 7110628 1 + C T HNSC 7110628 + 7110608 7110648 41 AACCGGCGTTCGAGAGCAGCCGGCGGGGCCCGCCGCCTCCC AACCGGCGTTCGAGAGCAGCTGGCGGGGCCCGCCGCCTCCC Direct Loss 0.961092534318035 0 0.8983622 0 prediction 0.92218506863607 Functional Loss - RBMXL2 ENSG00000170748 CDS Human protein_coding chr11:7110628 chr11:7110628 nonsynonymous SNV 0.226 2 21 hm5C_associated_SNPs_48360 0 0 0 0 0 exosome 0.500231643921092 0 0.7967244 0.000463287842184856 hm5C_site_3680 DeepMRMD:0.7967244;iRNA_m5C:0.000463287842184856 3681 chr1 101705224 101705224 1 + C A UCEC 101705224 + 101705204 101705244 41 TGCAGAATCTACTCCTTGGTCAGGACTCGGAGCCGCCGCCT TGCAGAATCTACTCCTTGGTAAGGACTCGGAGCCGCCGCCT Direct Loss 0.961092054899928 0 0.5725045 0 prediction 0.922184109799856 Functional Loss - S1PR1 ENSG00000170989 CDS Human protein_coding chr1:101705224 chr1:101705224 synonymous SNV . 0 21 hm5C_associated_SNPs_48361 0 0 0 0 0 Endoplasmic reticulum 0.500231643370083 0 0.145009 0.000463286740165714 hm5C_site_3681 DeepMRMD:0.145009;iRNA_m5C:0.000463286740165714 3682 chr7 129950826 129950826 1 + C T rs147568416 129950826 + 129950806 129950846 41 GCCCCAGATGCCGAGGAACTCGTGAGTCACAGCTGCCTCCC GCCCCAGATGCCGAGGAACTTGTGAGTCACAGCTGCCTCCC Direct Loss 0.961089449006185 0 0.881426 0 prediction 0.922178898012369 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950826 chr7:129950826 synonymous SNV . 0 21 hm5C_associated_SNPs_48362 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0 0.762852 0.00046328784218308 hm5C_site_3682 DeepMRMD:0.762852;iRNA_m5C:0.00046328784218308 3683 chr16 1130927 1130927 1 + C T rs116550527 1130927 + 1130907 1130947 41 TTGGGGCAGGGGCTCTGGCCCGGGAGAGGGAACGGGGACAG TTGGGGCAGGGGCTCTGGCCTGGGAGAGGGAACGGGGACAG Direct Loss 0.961087379784224 0 0.9071643 0 prediction 0.922174759568448 Functional Loss - SSTR5 ENSG00000162009 UTR3 Human protein_coding chr16:1130927 chr16:1130927 . . 0 21 hm5C_associated_SNPs_48363 0 0 0 0 0 exosome 0.500231643921092 0 0.8143286 0.000463287842184856 hm5C_site_3683 DeepMRMD:0.8143286;iRNA_m5C:0.000463287842184856 3684 chr19 35940868 35940868 1 + C A LUAD 35940868 + 35940848 35940888 41 CCCAAGGTCGTCTGCGCCCTCACGAGTTTTGGCTTCTACAG CCCAAGGTCGTCTGCGCCCTAACGAGTTTTGGCTTCTACAG Direct Loss 0.961071189342334 0 0.50976664 0 prediction 0.922142378684667 Functional Loss - FFAR2 ENSG00000126262 CDS Human protein_coding chr19:35940868 chr19:35940868 synonymous SNV . 0 21 hm5C_associated_SNPs_48364 0 0 0 0 0 exosome 0.500231643896384 0 0.0195332800000001 0.000463287792768607 hm5C_site_3684 DeepMRMD:0.0195332800000001;iRNA_m5C:0.000463287792768607 3685 chr10 81904064 81904064 1 + C T rs115786338 81904064 + 81904044 81904084 41 GCTGGCCTGGAACCTGCCCCCGGGACCCTTCAGCCCCGCTC GCTGGCCTGGAACCTGCCCCTGGGACCCTTCAGCCCCGCTC Direct Loss 0.961056925632688 0 0.9098424 0 prediction 0.922113851265377 Functional Loss - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81904064 chr10:81904064 nonsynonymous SNV 0.859 0 21 hm5C_associated_SNPs_48365 0 0 0 0 2 exosome 0.500231643921092 0 0.8196848 0.000463287842184856 hm5C_site_3685 DeepMRMD:0.8196848;iRNA_m5C:0.000463287842184856 3686 chr18 7231198 7231198 1 + C T UCEC 7231198 + 7231178 7231218 41 CCCCAAGAGGATGCTGTTCACGGGGAGGAGACAGAAGTTTT CCCCAAGAGGATGCTGTTCATGGGGAGGAGACAGAAGTTTT Direct Loss 0.961033387102258 0 0.89619195 0 prediction 0.922066774204516 Functional Loss - LRRC30 ENSG00000206422 CDS Human protein_coding chr18:7231198 chr18:7231198 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48366 0 0 0 0 0 unknown 0.500231643921092 0 0.7923839 0.000463287842184856 hm5C_site_3686 DeepMRMD:0.7923839;iRNA_m5C:0.000463287842184856 3687 chr1 36752564 36752564 1 + C G rs187894311 36752564 + 36752544 36752584 41 CAGTTTCTGAGCTGAGTCCTCGGGAGCGAAGCCCAGCTCTC CAGTTTCTGAGCTGAGTCCTGGGGAGCGAAGCCCAGCTCTC Direct Loss 0.961031741761096 0 0.92025733 0 prediction 0.922063483522191 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36752564 chr1:36752564 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_48367 0 0 1 0 0 Nucleus 0.50023163360126 0 0.84051466 0.00046326720251999 hm5C_site_3687 DeepMRMD:0.84051466;iRNA_m5C:0.00046326720251999 3688 chr20 44576281 44576281 1 + C T OV 44576281 + 44576261 44576301 41 AGGAGCTGAGTGCTGCCTACCGGCAGTCAGGCCGCAGCCAC AGGAGCTGAGTGCTGCCTACTGGCAGTCAGGCCGCAGCCAC Direct Loss 0.961013650187814 0 0.85957503 0 prediction 0.922027300375627 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44576281 chr20:44576281 nonsynonymous SNV 0.977 2 21 hm5C_associated_SNPs_48368 0 0 0 0 0 chromatin 0.5002316433175 0 0.71915006 0.000463286635000948 hm5C_site_3688 DeepMRMD:0.71915006;iRNA_m5C:0.000463286635000948 3689 chr8 99168559 99168559 1 + C T LUSC 99168559 + 99168539 99168579 41 GGATGCAGGGTGTCAAGAATCGGCAGGGCCTGAGAGGATCA GGATGCAGGGTGTCAAGAATTGGCAGGGCCTGAGAGGATCA Direct Loss 0.960996673160801 0 0.8741702 0 prediction 0.921993346321602 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99168559 chr8:99168559 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48369 0 0 0 0 1 Mitochondrion 0.500231643921094 0 0.7483404 0.000463287842188631 hm5C_site_3689 DeepMRMD:0.7483404;iRNA_m5C:0.000463287842188631 3690 chr5 76624876 76624876 1 + C T COAD 76624876 + 76624856 76624896 41 GGTGATCCTCGCAGTGGTTTCGCGAGTGTAAGTGCACCTCC GGTGATCCTCGCAGTGGTTTTGCGAGTGTAAGTGCACCTCC Direct Loss 0.960995857505193 0 0.22147793 0 prediction 0.921991715010386 Functional Loss - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76624876 chr5:76624876 nonsynonymous SNV 0.956 1 21 hm5C_associated_SNPs_48370 0 0 0 0 1 Nucleus 0.500232053361595 0 0 0.000464106723189195 hm5C_site_3690 DeepMRMD:0;iRNA_m5C:0.000464106723189195 3691 chr11 51515438 51515438 1 + C A rs142892443 51515438 + 51515418 51515458 41 CCATCACTGCCAGCCCATCACTGGGGTCCCCCATGTACCTT CCATCACTGCCAGCCCATCAATGGGGTCCCCCATGTACCTT Direct Loss 0.960992096752225 0 0.60274994 0 prediction 0.921984193504449 Functional Loss - OR4C46 ENSG00000185926 CDS Human protein_coding chr11:51515438 chr11:51515438 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_48371 0 0 0 0 0 unknown 0.500231643921092 0 0.20549988 0.000463287842184856 hm5C_site_3691 DeepMRMD:0.20549988;iRNA_m5C:0.000463287842184856 3692 chr2 74375226 74375226 1 + C T rs183837710 74375226 + 74375206 74375246 41 ACTGCAGCGCCTGCCGACCTCGGGGCCCCGCCCTCTGCCTT ACTGCAGCGCCTGCCGACCTTGGGGCCCCGCCCTCTGCCTT Direct Loss 0.960951562205957 0 0.95037615 0 prediction 0.921903124411913 Functional Loss - BOLA3-AS1 ENSG00000225439 ncRNA_exonic Human antisense chr2:74375226 chr2:74375226 . . 0 21 hm5C_associated_SNPs_48372 0 0 0 0 0 unknown 0.500231643921092 0 0.9007523 0.000463287842184856 hm5C_site_3692 DeepMRMD:0.9007523;iRNA_m5C:0.000463287842184856 3693 chr17 45401215 45401215 1 + C T rs58611856 45401215 + 45401195 45401235 41 CTGGGCGGTGGCGGTGGCCGCGGCAGCACCGGCTCGACAGC CTGGGCGGTGGCGGTGGCCGTGGCAGCACCGGCTCGACAGC Direct Loss 0.960932991196407 0 0.8877347 0 prediction 0.921865982392814 Functional Loss - THCAT158 ENSG00000178852 UTR5 Human protein_coding chr17:45401215 chr17:45401215 . . 0 21 hm5C_associated_SNPs_48373 0 0 0 0 1 unknown 0.500224879002932 0 0.7754694 0.00044975800586422 hm5C_site_3693 DeepMRMD:0.7754694;iRNA_m5C:0.00044975800586422 3694 chr4 44691392 44691392 1 + C T UCEC 44691392 + 44691372 44691412 41 ATTCCAGTGTGACCGTTCATCGGGATAGTAGCCTTGCTCTG ATTCCAGTGTGACCGTTCATTGGGATAGTAGCCTTGCTCTG Direct Loss 0.960917221936244 0 0.9275303 0 prediction 0.921834443872488 Functional Loss - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44691392 chr4:44691392 nonsynonymous SNV 0.986 3 21 hm5C_associated_SNPs_48374 0 0 1 1 1 Ribosome 0.500231643941887 0 0.8550606 0.000463287883773589 hm5C_site_3694 DeepMRMD:0.8550606;iRNA_m5C:0.000463287883773589 3695 chr3 44637309 44637309 1 + C G rs141493347 44637309 + 44637289 44637329 41 GCATTTAGCAGCAGTGGAACCGCGAGCAAGTCCCTTCCTTT GCATTTAGCAGCAGTGGAACGGCGAGCAAGTCCCTTCCTTT Direct Loss 0.960914002253445 0 0.40139842 0 prediction 0.921828004506891 Functional Loss - ZNF660 ENSG00000236869 ncRNA_intronic Human antisense chr3:44637309 chr3:44637309 . . 0 21 hm5C_associated_SNPs_48375 0 0 0 0 0 exosome 0.500231636290457 0 0 0.000463272580914387 hm5C_site_3695 DeepMRMD:0;iRNA_m5C:0.000463272580914387 3696 chr6 43970539 43970539 1 + C T rs540635474 43970539 + 43970519 43970559 41 GCGGCGGCGGCGGGAGGAGACGCAGGTCACGCCCCCTTCCC GCGGCGGCGGCGGGAGGAGATGCAGGTCACGCCCCCTTCCC Direct Loss 0.960905539321376 0 0.90606105 0 prediction 0.921811078642752 Functional Loss - C6orf223 ENSG00000181577 CDS Human protein_coding chr6:43970539 chr6:43970539 synonymous SNV . 0 21 hm5C_associated_SNPs_48376 0 0 0 0 0 nucleus 0.500231644017106 0 0.8121221 0.000463288034212139 hm5C_site_3696 DeepMRMD:0.8121221;iRNA_m5C:0.000463288034212139 3697 chr10 135053794 135053794 1 + C T COAD 135053794 + 135053774 135053814 41 CCTGTGTGCTATGCCACAGACGGGGGATGCATTTTGAGGAG CCTGTGTGCTATGCCACAGATGGGGGATGCATTTTGAGGAG Direct Loss 0.960886313537257 0 0.92961967 0 prediction 0.921772627074513 Functional Loss - VENTX ENSG00000151650 CDS Human protein_coding chr10:135053794 chr10:135053794 nonsynonymous SNV 0.000 4 21 hm5C_associated_SNPs_48377 0 0 0 0 0 Nucleus 0.500231641586834 0 0.85923934 0.000463283173667728 hm5C_site_3697 DeepMRMD:0.85923934;iRNA_m5C:0.000463283173667728 3698 chr19 4792857 4792857 1 + C T BLCA 4792857 + 4792837 4792877 41 GGGCCATGGAGCTGCGTCACCAGGGGGGCGAGTACCTGCCC GGGCCATGGAGCTGCGTCACTAGGGGGGCGAGTACCTGCCC Direct Loss 0.960881197198653 0 0.9374386 0 prediction 0.921762394397305 Functional Loss - FEM1A ENSG00000141965 CDS Human protein_coding chr19:4792857 chr19:4792857 stopgain 0.992 0 21 hm5C_associated_SNPs_48378 0 0 0 0 0 Ribosome 0.50023164392109 0 0.8748772 0.000463287842180415 hm5C_site_3698 DeepMRMD:0.8748772;iRNA_m5C:0.000463287842180415 3699 chr6 146864948 146864948 1 + C A rs543942735 146864948 + 146864928 146864968 41 CCGGGGGCGCGGCGGCAGAGCGCGAGGCCGGGCAGGGGGCC CCGGGGGCGCGGCGGCAGAGAGCGAGGCCGGGCAGGGGGCC Direct Loss 0.960872383521199 0 0.9116194 0 prediction 0.921744767042397 Functional Loss - RAB32 ENSG00000118508 UTR5 Human protein_coding chr6:146864948 chr6:146864948 . . 0 21 hm5C_associated_SNPs_48379 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8232388 0.000463287842184856 hm5C_site_3699 DeepMRMD:0.8232388;iRNA_m5C:0.000463287842184856 3700 chr11 6292141 6292141 1 + C G UCEC 6292141 + 6292121 6292161 41 AGGTGAGGGTGAGAAGGAAGCTGGAAATGGAGTTGAGCTGG AGGTGAGGGTGAGAAGGAAGGTGGAAATGGAGTTGAGCTGG Direct Loss 0.960854486105197 0 0.46865332 0 prediction 0.921708972210393 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292141 chr11:6292141 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_48380 0 0 0 0 0 unknown 0.500231643611105 0 0 0.000463287222210562 hm5C_site_3700 DeepMRMD:0;iRNA_m5C:0.000463287222210562 3701 chr19 863170 863170 1 + C A rs564333282 863170 + 863150 863190 41 GCTCGCGCGTTTGCGGCAACCGCAAGAAGCCCGGGATCTAC GCTCGCGCGTTTGCGGCAACAGCAAGAAGCCCGGGATCTAC Direct Loss 0.960836554802502 0 0.9005059 0 prediction 0.921673109605004 Functional Loss - CFD ENSG00000197766 CDS Human protein_coding chr19:863170 chr19:863170 nonsynonymous SNV 0.480 1 21 hm5C_associated_SNPs_48381 0 0 1 0 0 Cytosol 0.500231679865029 0 0.8010118 0.0004633597300574 hm5C_site_3701 DeepMRMD:0.8010118;iRNA_m5C:0.0004633597300574 Heel bone mineral density 3702 chr17 73703316 73703316 1 + C G rs149170453 73703316 + 73703296 73703336 41 TGCCCGGTGAGCGCAGCCAGCAGGAGCTGAGCAGCGGGGGA TGCCCGGTGAGCGCAGCCAGGAGGAGCTGAGCAGCGGGGGA Direct Loss 0.960823580479809 0 0.90408576 0 prediction 0.921647160959618 Functional Loss - SAP30BP ENSG00000161526 UTR3 Human protein_coding chr17:73703316 chr17:73703316 . . 0 21 hm5C_associated_SNPs_48382 0 0 1 0 0 Cytosol 0.500231643839561 0 0.80817152 0.000463287679121294 hm5C_site_3702 DeepMRMD:0.80817152;iRNA_m5C:0.000463287679121294 3703 chr11 67376990 67376990 1 + C T UCEC 67376990 + 67376970 67377010 41 GCAAGGACCGGGAGATCTTACGCCATGATCCTCACAAGCTG GCAAGGACCGGGAGATCTTATGCCATGATCCTCACAAGCTG Direct Loss 0.960809322890659 0 0.32188147 0 prediction 0.921618645781318 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376990 chr11:67376990 nonsynonymous SNV 0.996 5 21 hm5C_associated_SNPs_48383 0 0 1 0 1 Ribosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3703 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3704 chr19 41725315 41725315 1 + C T COAD 41725315 + 41725295 41725335 41 CCCATGGCGTGGCGGTGCCCCAGGATGGGCAGGGTCCCGCT CCCATGGCGTGGCGGTGCCCTAGGATGGGCAGGGTCCCGCT Direct Loss 0.96080338209827 0 0.8522833 0 prediction 0.92160676419654 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41725315 chr19:41725315 synonymous SNV . 0 21 hm5C_associated_SNPs_48384 0 0 1 0 1 Nucleus 0.500231643921098 0 0.7045666 0.000463287842196181 hm5C_site_3704 DeepMRMD:0.7045666;iRNA_m5C:0.000463287842196181 3705 chr15 59910702 59910702 1 + C A LUSC 59910702 + 59910682 59910722 41 TTCAGGCTATTCTGAATAACCTGGAGGTCAAGAAGAAGCGA TTCAGGCTATTCTGAATAACATGGAGGTCAAGAAGAAGCGA Direct Loss 0.96079227692459 0 0.17890713 0 prediction 0.92158455384918 Functional Loss - GCNT3 ENSG00000140297 CDS Human protein_coding chr15:59910702 chr15:59910702 nonsynonymous SNV 0.921 2 21 hm5C_associated_SNPs_48385 0 0 0 0 0 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3705 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3706 chr20 43160615 43160615 1 + C A rs555325390 43160615 + 43160595 43160635 41 GCACGGAGAGGCGGCGAGACCGCAGGTGAGCAGGAGCCGGG GCACGGAGAGGCGGCGAGACAGCAGGTGAGCAGGAGCCGGG Direct Loss 0.960790343521024 0 0.4713434 0 prediction 0.921580687042047 Functional Loss - PKIG ENSG00000168734 UTR5 Human protein_coding chr20:43160615 chr20:43160615 . . 0 21 hm5C_associated_SNPs_48386 0 0 1 0 1 Ribosome 0.500231643922295 0 0 0.000463287844589599 hm5C_site_3706 DeepMRMD:0;iRNA_m5C:0.000463287844589599 3707 chr2 241500186 241500186 1 + G C rs553554660 241500186 - 241500166 241500206 41 GCCCGCGGCTCGCGCGCTCCCGAGGAAGAGTGAGGGCGCGA GCCCGCGGCTCGCGCGCTCCGGAGGAAGAGTGAGGGCGCGA Direct Loss 0.960775675503262 0 0.9117082 0 prediction 0.921551351006523 Functional Loss - ANKMY1;DUSP28 ENSG00000144504;ENSG00000188542 CDS Human other chr2:241500186 chr2:241500186 nonsynonymous SNV 0.048 4 21 hm5C_associated_SNPs_48387 0 0 0 0 1 unknown 0.500231643921093 0 0.8234164 0.000463287842185078 hm5C_site_3707 DeepMRMD:0.8234164;iRNA_m5C:0.000463287842185078 3708 chr11 76751733 76751733 1 + C T UCEC 76751733 + 76751713 76751753 41 GCCCCGCGCTCAGCTGTGACCGGGGACACCGGGTCTCCTGA GCCCCGCGCTCAGCTGTGACTGGGGACACCGGGTCTCCTGA Direct Loss 0.9607735908818 0 0.9256911 0 prediction 0.9215471817636 Functional Loss - B3GNT6 ENSG00000198488 CDS Human protein_coding chr11:76751733 chr11:76751733 nonsynonymous SNV 0.017 1 21 hm5C_associated_SNPs_48388 0 0 0 0 0 exosome 0.500231644094726 0 0.8513822 0.000463288189451516 hm5C_site_3708 DeepMRMD:0.8513822;iRNA_m5C:0.000463288189451516 3709 chr7 29606288 29606288 1 + C T rs10271996 29606288 + 29606268 29606308 41 TCCCGGAGGCGGGCAGGTCCCCGGAGGAGGCAGGCTTTCCT TCCCGGAGGCGGGCAGGTCCTCGGAGGAGGCAGGCTTTCCT Direct Loss 0.960769802283143 0 0.92332566 0 prediction 0.921539604566285 Functional Loss - PRR15 ENSG00000176532 CDS Human protein_coding chr7:29606288 chr7:29606288 nonsynonymous SNV 0.154 0 21 hm5C_associated_SNPs_48389 0 0 0 0 0 Cytosol 0.500231643921093 0 0.84665132 0.000463287842185078 hm5C_site_3709 DeepMRMD:0.84665132;iRNA_m5C:0.000463287842185078 3710 chrX 69282425 69282425 1 + C T CESC 69282425 + 69282405 69282445 41 ATACTGCGCCGCCACCAACGCGAGAGGCAGGAGCTGCAGGC ATACTGCGCCGCCACCAACGTGAGAGGCAGGAGCTGCAGGC Direct Loss 0.96076829382625 0 0.92522466 0 prediction 0.921536587652499 Functional Loss - OTUD6A ENSG00000189401 CDS Human protein_coding chrX:69282425 chrX:69282425 synonymous SNV . 0 21 hm5C_associated_SNPs_48390 0 0 0 0 0 unknown 0.500231643968371 0 0.85044932 0.000463287936741663 hm5C_site_3710 DeepMRMD:0.85044932;iRNA_m5C:0.000463287936741663 3711 chr14 102028247 102028247 1 + C T GBM 102028247 + 102028227 102028267 41 GGCGGTCCGGCGCCCAACTCCGAGGTGGTTCTGCCCGACGG GGCGGTCCGGCGCCCAACTCTGAGGTGGTTCTGCCCGACGG Direct Loss 0.960761621577228 0 0.9397284 0 prediction 0.921523243154455 Functional Loss - DIO3 ENSG00000197406 CDS Human protein_coding chr14:102028247 chr14:102028247 unknown . 0 21 hm5C_associated_SNPs_48391 0 0 0 0 0 Endoplasmic reticulum 0.500243630690847 0 0.8794568 0.000487261381693527 hm5C_site_3711 DeepMRMD:0.8794568;iRNA_m5C:0.000487261381693527 3712 chr7 29724845 29724845 1 + G C rs140627398 29724845 - 29724825 29724865 41 GCTCCTGCCTTCTTGGCTCTCGGGGCACAGCGCGCGGCCCG GCTCCTGCCTTCTTGGCTCTGGGGGCACAGCGCGCGGCCCG Direct Loss 0.960753075496362 0 0.95907664 0 prediction 0.921506150992723 Functional Loss - DPY19L2P3;ZNRF2P2 ENSG00000225264;ENSG00000227855 ncRNA_exonic Human other chr7:29724845 chr7:29724845 . . 0 21 hm5C_associated_SNPs_48392 0 0 1 0 0 unknown 0.50023164392152 0 0.91815328 0.000463287843039728 hm5C_site_3712 DeepMRMD:0.91815328;iRNA_m5C:0.000463287843039728 3713 chr9 135117313 135117313 1 + C A rs557587464 135117313 + 135117293 135117333 41 GCCAGAACGGAGGCACCTGCCTGCAGAACCAGCGCTGCGCC GCCAGAACGGAGGCACCTGCATGCAGAACCAGCGCTGCGCC Direct Loss 0.960745994912013 0 0.8976649 0 prediction 0.921491989824026 Functional Loss - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135117313 chr9:135117313 nonsynonymous SNV 0.995 1 21 hm5C_associated_SNPs_48393 0 0 0 0 1 exosome 0.500231810533371 0 0.7953298 0.000463621066741915 hm5C_site_3713 DeepMRMD:0.7953298;iRNA_m5C:0.000463621066741915 3714 chr8 99440406 99440406 1 + C T UCEC 99440406 + 99440386 99440426 41 ATGACTACGACGACGTCCAGCGGGAGTTCTACTTCGACCGC ATGACTACGACGACGTCCAGTGGGAGTTCTACTTCGACCGC Direct Loss 0.960741969113913 0 0.91432226 0 prediction 0.921483938227825 Functional Loss - KCNS2 ENSG00000156486 CDS Human protein_coding chr8:99440406 chr8:99440406 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_48394 0 0 0 0 0 exosome 0.500231633248849 0 0.82864452 0.000463266497698234 hm5C_site_3714 DeepMRMD:0.82864452;iRNA_m5C:0.000463266497698234 3715 chr17 79205672 79205672 1 + G A rs61745844 79205672 - 79205652 79205692 41 ACAGCCATTCAGGGGCCAGCCGGGAGCCGGGTGACCTGGCA ACAGCCATTCAGGGGCCAGCTGGGAGCCGGGTGACCTGGCA Direct Loss 0.96074162693967 0 0.93870735 0 prediction 0.92148325387934 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79205672 chr17:79205672 nonsynonymous SNV 0.294 1 21 hm5C_associated_SNPs_48395 0 0 1 0 1 chromatin 0.500231643921092 0 0.8774147 0.000463287842184856 hm5C_site_3715 DeepMRMD:0.8774147;iRNA_m5C:0.000463287842184856 3716 chr20 57598821 57598821 1 + C T COAD 57598821 + 57598801 57598841 41 ACGGAGGGAGCCGAGCTGATCGAGAATGTCCTAGAGGTGGT ACGGAGGGAGCCGAGCTGATTGAGAATGTCCTAGAGGTGGT Direct Loss 0.960736954894817 0 0.8884016 0 prediction 0.921473909789634 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598821 chr20:57598821 synonymous SNV . 0 21 hm5C_associated_SNPs_48396 0 0 0 0 1 Cytosol 0.500231643229279 0 0.7768032 0.000463286458558976 hm5C_site_3716 DeepMRMD:0.7768032;iRNA_m5C:0.000463286458558976 3717 chr19 39398245 39398245 1 + C G rs35941401 39398245 + 39398225 39398265 41 CCTGAGCCCGAGGGCGAGGACGAGAAATCCGGCCCCTGCAG CCTGAGCCCGAGGGCGAGGAGGAGAAATCCGGCCCCTGCAG Direct Loss 0.96073017519952 0 0.8979036 0 prediction 0.92146035039904 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39398245 chr19:39398245 nonsynonymous SNV 0.755 0 21 hm5C_associated_SNPs_48397 0 0 1 0 1 Ribosome 0.500231643921092 0 0.7958072 0.000463287842184856 hm5C_site_3717 DeepMRMD:0.7958072;iRNA_m5C:0.000463287842184856 3718 chr11 6292370 6292370 1 + C A LUAD 6292370 + 6292350 6292390 41 GGCGCTGACGGCTCCTGGGCCGGGATCCGGCTCCCGGCCCA GGCGCTGACGGCTCCTGGGCAGGGATCCGGCTCCCGGCCCA Direct Loss 0.960720726745059 0 0.9209415 0 prediction 0.921441453490119 Functional Loss - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292370 chr11:6292370 nonsynonymous SNV 0.084 0 21 hm5C_associated_SNPs_48398 0 0 0 0 0 unknown 0.500231643925834 0 0.841883 0.000463287851667049 hm5C_site_3718 DeepMRMD:0.841883;iRNA_m5C:0.000463287851667049 3719 chr1 152749091 152749091 1 + C A rs41268480 152749091 + 152749071 152749111 41 GTTGCCTGAGCCACCACAGACGGCGTAGGTCCCACCGCCAC GTTGCCTGAGCCACCACAGAAGGCGTAGGTCCCACCGCCAC Direct Loss 0.960707379135001 0 0.8952063 0 prediction 0.921414758270001 Functional Loss - LCE1F ENSG00000240386 CDS Human protein_coding chr1:152749091 chr1:152749091 synonymous SNV . 0 21 hm5C_associated_SNPs_48399 0 0 0 0 0 unknown 0.500231643921092 0 0.7904126 0.000463287842184856 hm5C_site_3719 DeepMRMD:0.7904126;iRNA_m5C:0.000463287842184856 3720 chr9 40702830 40702830 1 + C G HNSC 40702830 + 40702810 40702850 41 ATCCTCAAGCCAAGCATCCTCAGGATCTGGCCTCCACCCCA ATCCTCAAGCCAAGCATCCTGAGGATCTGGCCTCCACCCCA Direct Loss 0.96070648381693 0 0.7903401 0 prediction 0.92141296763386 Functional Loss - SPATA31A3 ENSG00000147926 CDS Human other chr9:40702830 chr9:40702830 nonsynonymous SNV 0.037 0 21 hm5C_associated_SNPs_48400 0 0 0 0 0 unknown 0.500231643916704 0 0.5806802 0.000463287833407877 hm5C_site_3720 DeepMRMD:0.5806802;iRNA_m5C:0.000463287833407877 3721 chr2 176988179 176988179 1 + C T STAD 176988179 + 176988159 176988199 41 GGGGGGAACCGGGCCTGGGGCAGGGATCGGGGCCGCGACTG GGGGGGAACCGGGCCTGGGGTAGGGATCGGGGCCGCGACTG Direct Loss 0.960702155786063 0 0.9080303 0 prediction 0.921404311572126 Functional Loss - HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176988179 chr2:176988179 nonsynonymous SNV 0.358 1 21 hm5C_associated_SNPs_48401 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8160606 0.000463287842184856 hm5C_site_3721 DeepMRMD:0.8160606;iRNA_m5C:0.000463287842184856 3722 chr1 181018307 181018307 1 + C T SKCM 181018307 + 181018287 181018327 41 CCACATATGACAGTGTCACTCGGCAGAAGGAGCCACGGGCC CCACATATGACAGTGTCACTTGGCAGAAGGAGCCACGGGCC Direct Loss 0.960683685277497 0 0.90648675 0 prediction 0.921367370554993 Functional Loss - MR1 ENSG00000153029 CDS Human protein_coding chr1:181018307 chr1:181018307 nonsynonymous SNV 0.095 3 21 hm5C_associated_SNPs_48402 0 0 1 0 0 Endoplasmic reticulum 0.500231640692542 0 0.8129735 0.000463281385083558 hm5C_site_3722 DeepMRMD:0.8129735;iRNA_m5C:0.000463281385083558 3723 chr20 25656432 25656432 1 + G A UCEC 25656432 - 25656412 25656452 41 GGGAGTGTGGGCGAAGGTTTCGGGATAAGTCCTCCTATAAC GGGAGTGTGGGCGAAGGTTTTGGGATAAGTCCTCCTATAAC Direct Loss 0.960677670830234 0 0.94451165 0 prediction 0.921355341660468 Functional Loss - ZNF337 ENSG00000130684 CDS Human protein_coding chr20:25656432 chr20:25656432 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_48403 0 0 1 0 0 Cytosol 0.500231643921092 0 0.8890233 0.000463287842184856 hm5C_site_3723 DeepMRMD:0.8890233;iRNA_m5C:0.000463287842184856 3724 chr17 39240563 39240563 1 + C A rs193005959 39240563 + 39240543 39240583 41 TGCTGTCAGACCACCTGTTGCAGGACCACCTGCTACCGCCC TGCTGTCAGACCACCTGTTGAAGGACCACCTGCTACCGCCC Direct Loss 0.960642576755502 0 0.8973295 0 prediction 0.921285153511005 Functional Loss - KRTAP4-7 ENSG00000240871 CDS Human protein_coding chr17:39240563 chr17:39240563 stopgain 0.958 0 21 hm5C_associated_SNPs_48404 0 0 0 0 0 unknown 0.500231643921087 0 0.794659 0.000463287842174198 hm5C_site_3724 DeepMRMD:0.794659;iRNA_m5C:0.000463287842174198 3725 chr1 849927 849927 1 + C G rs530197896 849927 + 849907 849947 41 CGTGGGGACCCAGGTGTGTTCAGGGGTCTCCTTCAGGGAAG CGTGGGGACCCAGGTGTGTTGAGGGGTCTCCTTCAGGGAAG Direct Loss 0.960636507634596 0 0.8929384 0 prediction 0.921273015269191 Functional Loss - FAM41C;LOC100130417 ENSG00000230699 ncRNA_exonic Human lincRNA chr1:849927 chr1:849927 . . 0 21 hm5C_associated_SNPs_48405 0 0 0 0 0 unknown 0.50023164388613 0 0.7858768 0.000463287772260568 hm5C_site_3725 DeepMRMD:0.7858768;iRNA_m5C:0.000463287772260568 3726 chr14 68118141 68118141 1 + C T KIRP 68118141 + 68118121 68118161 41 TTGTAGTAAACCAGGCCTCCCAGGATGGCGAGCTCCAGTAA TTGTAGTAAACCAGGCCTCCTAGGATGGCGAGCTCCAGTAA Direct Loss 0.960607809666636 0 0.87284887 0 prediction 0.921215619333272 Functional Loss - VTI1B ENSG00000100568 CDS Human protein_coding chr14:68118141 chr14:68118141 synonymous SNV . 0 21 hm5C_associated_SNPs_48406 0 0 0 0 0 Cytosol 0.500231643948699 0 0.74569774 0.000463287897398468 hm5C_site_3726 DeepMRMD:0.74569774;iRNA_m5C:0.000463287897398468 3727 chr15 49170590 49170590 1 + C T UCEC 49170590 + 49170570 49170610 41 TGGCGGCGCCAGAGGGGAAACGGAGCCTTGCTAACGGGCCC TGGCGGCGCCAGAGGGGAAATGGAGCCTTGCTAACGGGCCC Direct Loss 0.960600948612391 0 0.91630125 0 prediction 0.921201897224782 Functional Loss - EID1 ENSG00000255302 CDS Human protein_coding chr15:49170590 chr15:49170590 nonsynonymous SNV 0.003 2 21 hm5C_associated_SNPs_48407 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8326025 0.000463287842184856 hm5C_site_3727 DeepMRMD:0.8326025;iRNA_m5C:0.000463287842184856 3728 chr1 54423865 54423865 1 + C T COAD 54423865 + 54423845 54423885 41 TTGAGGAGATTAAGTCTTTCCGGGAGCTGACCTGCCTGGAT TTGAGGAGATTAAGTCTTTCTGGGAGCTGACCTGCCTGGAT Direct Loss 0.960558203706263 0 0.92428243 0 prediction 0.921116407412526 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54423865 chr1:54423865 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48408 0 0 0 0 2 Ribosome 0.500231643921092 0 0.84856486 0.000463287842184856 hm5C_site_3728 DeepMRMD:0.84856486;iRNA_m5C:0.000463287842184856 3729 chrX 7811645 7811645 1 + C A rs6639946 7811645 + 7811625 7811665 41 GGCACCTGAGGCGGAGAGCGCGCCAGCGGCACCCGGCCCCA GGCACCTGAGGCGGAGAGCGAGCCAGCGGCACCCGGCCCCA Direct Loss 0.960546870587906 0 0.75682867 0 prediction 0.921093741175811 Functional Loss - VCX ENSG00000182583 CDS Human protein_coding chrX:7811645 chrX:7811645 nonsynonymous SNV 0.004 1 21 hm5C_associated_SNPs_48409 0 0 0 0 0 unknown 0.500231643806666 0 0.51365734 0.000463287613332364 hm5C_site_3729 DeepMRMD:0.51365734;iRNA_m5C:0.000463287613332364 3730 chr20 2413155 2413155 1 + C T BLCA 2413155 + 2413135 2413175 41 GCGTGCCTACCCTGGAGCCTCAGGAGAGGGCCTCAGTCCAG GCGTGCCTACCCTGGAGCCTTAGGAGAGGGCCTCAGTCCAG Direct Loss 0.960542386412501 0 0.9096135 0 prediction 0.921084772825001 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2413155 chr20:2413155 stopgain 0.920 0 21 hm5C_associated_SNPs_48410 0 0 0 0 0 exosome 0.500231665343638 0 0.819227 0.000463330687275665 hm5C_site_3730 DeepMRMD:0.819227;iRNA_m5C:0.000463330687275665 3731 chr14 74824462 74824462 1 + C T COAD 74824462 + 74824442 74824482 41 TCCTGCAGGACAGCTTCCACCGGGGGGGCGTCGTGCCACTT TCCTGCAGGACAGCTTCCACTGGGGGGGCGTCGTGCCACTT Direct Loss 0.960532614191351 0 0.96616685 0 prediction 0.921065228382702 Functional Loss - VRTN ENSG00000133980 CDS Human protein_coding chr14:74824462 chr14:74824462 nonsynonymous SNV 0.021 2 21 hm5C_associated_SNPs_48411 0 0 0 0 0 unknown 0.500231588067064 0 0.9323337 0.00046317613412894 hm5C_site_3731 DeepMRMD:0.9323337;iRNA_m5C:0.00046317613412894 3732 chr3 183756631 183756631 1 + C T OV 183756631 + 183756611 183756651 41 ACAAGGGCCCAGCGGGAACACGAGGCCCAGAAGCAGCACTC ACAAGGGCCCAGCGGGAACATGAGGCCCAGAAGCAGCACTC Direct Loss 0.960510164849578 0 0.8962849 0 prediction 0.921020329699156 Functional Loss - HTR3D ENSG00000186090 CDS Human protein_coding chr3:183756631 chr3:183756631 synonymous SNV . 0 21 hm5C_associated_SNPs_48412 0 0 0 0 1 unknown 0.50023164392109 0 0.7925698 0.000463287842180859 hm5C_site_3732 DeepMRMD:0.7925698;iRNA_m5C:0.000463287842180859 3733 chr6 100061036 100061036 1 + C T STAD 100061036 + 100061016 100061056 41 GCCTTCCTGCACCACGAACACGCGGCTCGCCAAGGCGCCGT GCCTTCCTGCACCACGAACATGCGGCTCGCCAAGGCGCCGT Direct Loss 0.960493050520915 0 0.38065904 0 prediction 0.92098610104183 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100061036 chr6:100061036 synonymous SNV . 0 21 hm5C_associated_SNPs_48413 0 0 0 0 0 exosome 0.500231643921093 0 0 0.000463287842185078 hm5C_site_3733 DeepMRMD:0;iRNA_m5C:0.000463287842185078 3734 chr20 48604577 48604577 1 + C T BLCA 48604577 + 48604557 48604597 41 GCACCAAGAGTCCGGCTGCTCAGGATGTCCCCGCTGACCCT GCACCAAGAGTCCGGCTGCTTAGGATGTCCCCGCTGACCCT Direct Loss 0.960478797066471 0 0.93070626 0 prediction 0.920957594132942 Functional Loss - SNAI1 ENSG00000124216 CDS Human protein_coding chr20:48604577 chr20:48604577 nonsynonymous SNV 0.736 1 21 hm5C_associated_SNPs_48414 0 0 0 0 0 Cytosol 0.500231777813353 0 0.86141252 0.000463555626705636 hm5C_site_3734 DeepMRMD:0.86141252;iRNA_m5C:0.000463555626705636 3735 chr12 27933870 27933870 1 + C T rs551232636 27933870 + 27933850 27933890 41 TCGTGGCCCTCGGGGACTTCCTGGGGGGACCCCTGGCCCCT TCGTGGCCCTCGGGGACTTCTTGGGGGGACCCCTGGCCCCT Direct Loss 0.960475636880024 0 0.9607967 0 prediction 0.920951273760049 Functional Loss - KLHL42 ENSG00000087448 CDS Human protein_coding chr12:27933870 chr12:27933870 synonymous SNV . 0 21 hm5C_associated_SNPs_48415 0 0 1 0 0 Ribosome 0.500231643914596 0 0.9215934 0.000463287829192582 hm5C_site_3735 DeepMRMD:0.9215934;iRNA_m5C:0.000463287829192582 3736 chr3 143691549 143691549 1 + C A BLCA 143691549 + 143691529 143691569 41 GCGCAGCTCGACCAGAGCATCTGCAAGCGGGCCACCGGCCG GCGCAGCTCGACCAGAGCATATGCAAGCGGGCCACCGGCCG Direct Loss 0.960459289501849 0 0.9060895 0 prediction 0.920918579003698 Functional Loss - C3orf58 ENSG00000181744 CDS Human protein_coding chr3:143691549 chr3:143691549 synonymous SNV . 0 21 hm5C_associated_SNPs_48416 0 0 1 0 0 Ribosome 0.50023164394103 0 0.812179 0.000463287882059626 hm5C_site_3736 DeepMRMD:0.812179;iRNA_m5C:0.000463287882059626 3737 chr19 808577 808577 1 + C T rs148751202 808577 + 808557 808597 41 CTGAACGGGCACAAGCTGCACGGGAAGCCCATCCGCATCAC CTGAACGGGCACAAGCTGCATGGGAAGCCCATCCGCATCAC Direct Loss 0.960454839751485 0 0.52815485 0 prediction 0.92090967950297 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808577 chr19:808577 synonymous SNV . 0 21 hm5C_associated_SNPs_48417 0 0 1 0 1 Cytosol 0.500231957880417 0 0.0563096999999999 0.000463915760833045 hm5C_site_3737 DeepMRMD:0.0563096999999999;iRNA_m5C:0.000463915760833045 3738 chr19 44223154 44223154 1 + C T SKCM 44223154 + 44223134 44223174 41 CCCCGCCGCTGCGGGGCCGTCGAGACCCGCCTGGCCGCTGA CCCCGCCGCTGCGGGGCCGTTGAGACCCGCCTGGCCGCTGA Direct Loss 0.960453650376033 0 0.6376475 0 prediction 0.920907300752066 Functional Loss - IRGC ENSG00000124449 CDS Human protein_coding chr19:44223154 chr19:44223154 synonymous SNV . 0 21 hm5C_associated_SNPs_48418 0 0 0 0 0 unknown 0.500231643903062 0 0.275295 0.000463287806124146 hm5C_site_3738 DeepMRMD:0.275295;iRNA_m5C:0.000463287806124146 3739 chr4 128651929 128651929 1 + C T CESC 128651929 + 128651909 128651949 41 TGGTGCGGATTCCTCGCGAGCAGGGTGCGTCAAGGCAGGCC TGGTGCGGATTCCTCGCGAGTAGGGTGCGTCAAGGCAGGCC Direct Loss 0.960452473822833 0 0.9126996 0 prediction 0.920904947645665 Functional Loss - SLC25A31 ENSG00000151475 CDS Human protein_coding chr4:128651929 chr4:128651929 stopgain 0.311 1 21 hm5C_associated_SNPs_48419 0 0 0 0 0 unknown 0.500231644007931 0 0.8253992 0.000463288015862817 hm5C_site_3739 DeepMRMD:0.8253992;iRNA_m5C:0.000463288015862817 3740 chr10 116049170 116049170 1 + C T rs74157580 116049170 + 116049150 116049190 41 TGCGGAGGCTTGCAGGTCCCCGGGATTCCCTGATCCACGTG TGCGGAGGCTTGCAGGTCCCTGGGATTCCCTGATCCACGTG Direct Loss 0.960451641570175 0 0.9175511 0 prediction 0.920903283140351 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116049170 chr10:116049170 nonsynonymous SNV 0.878 1 21 hm5C_associated_SNPs_48420 0 0 0 0 1 exosome 0.500231642996273 0 0.8351022 0.000463285992546636 hm5C_site_3740 DeepMRMD:0.8351022;iRNA_m5C:0.000463285992546636 3741 chr19 41822663 41822663 1 + C T STAD 41822663 + 41822643 41822683 41 TCTACTGTGCTGAGGTGGCCCGGCAGGGCACTGCCCGGCCC TCTACTGTGCTGAGGTGGCCTGGCAGGGCACTGCCCGGCCC Direct Loss 0.960448815291402 0 0.3324064 0 prediction 0.920897630582803 Functional Loss - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41822663 chr19:41822663 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_48421 0 0 1 0 1 chromatin 0.500231644021205 0 0 0.000463288042409804 hm5C_site_3741 DeepMRMD:0;iRNA_m5C:0.000463288042409804 3742 chr2 216176960 216176960 1 + C T rs113290372 216176960 + 216176940 216176980 41 CCCGCCTTGGCGGCGGCCGGCGGGACCCGGCACTGCAGGGG CCCGCCTTGGCGGCGGCCGGTGGGACCCGGCACTGCAGGGG Direct Loss 0.960445527675502 0 0.88390505 0 prediction 0.920891055351003 Functional Loss - ATIC ENSG00000138363 CDS Human protein_coding chr2:216176960 chr2:216176960 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_48422 0 0 1 0 0 chromatin 0.500231643921126 0 0.7678101 0.000463287842251026 hm5C_site_3742 DeepMRMD:0.7678101;iRNA_m5C:0.000463287842251026 3743 chr6 88757688 88757688 1 + C T UCEC 88757688 + 88757668 88757708 41 TGTCGGCTGGCTGCTTCTGGCGGGCCTCCAGTCCGCGCGCG TGTCGGCTGGCTGCTTCTGGTGGGCCTCCAGTCCGCGCGCG Direct Loss 0.960439926279325 0 0.8931763 0 prediction 0.920879852558649 Functional Loss - SPACA1 ENSG00000118434 CDS Human protein_coding chr6:88757688 chr6:88757688 nonsynonymous SNV 0.443 0 21 hm5C_associated_SNPs_48423 0 0 0 0 0 unknown 0.500231661607407 0 0.7863526 0.00046332321481346 hm5C_site_3743 DeepMRMD:0.7863526;iRNA_m5C:0.00046332321481346 3744 chr11 67191044 67191044 1 + C A KIRC 67191044 + 67191024 67191064 41 TGCTCACAGCCCTGCTCTGCCAGGAGCTAGGTCTGCCCTGC TGCTCACAGCCCTGCTCTGCAAGGAGCTAGGTCTGCCCTGC Direct Loss 0.960439401871003 0 0.9021785 0 prediction 0.920878803742006 Functional Loss - CARNS1 ENSG00000172508 CDS Human protein_coding chr11:67191044 chr11:67191044 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_48424 0 0 0 0 0 exosome 0.500231643784884 0 0.804357 0.000463287569767434 hm5C_site_3744 DeepMRMD:0.804357;iRNA_m5C:0.000463287569767434 3745 chr2 39187231 39187231 1 + G A UCEC 39187231 - 39187211 39187251 41 AGGAGCTCGGCCGGGGCGCGCAGGGAGCGCTCCACGTTGCC AGGAGCTCGGCCGGGGCGCGTAGGGAGCGCTCCACGTTGCC Direct Loss 0.960435657506302 0 0.88904583 0 prediction 0.920871315012605 Functional Loss - ARHGEF33 ENSG00000214694;ENSG00000269210 CDS Human other chr2:39187231 chr2:39187231 stopgain . 0 21 hm5C_associated_SNPs_48425 0 0 0 0 0 exosome 0.500231622458477 0 0.77809166 0.000463244916953487 hm5C_site_3745 DeepMRMD:0.77809166;iRNA_m5C:0.000463244916953487 3746 chr14 69970332 69970332 1 + C T rs368383728 69970332 + 69970312 69970352 41 GCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTG GCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTG Direct Loss 0.960414981671789 0 0.92622066 0 prediction 0.920829963343578 Functional Loss - PLEKHD1 ENSG00000175985 intronic Human protein_coding chr14:69970332 chr14:69970332 . . 0 21 hm5C_associated_SNPs_48426 0 0 0 0 0 exosome 0.500231643921162 0 0.85244132 0.00046328784232319 hm5C_site_3746 DeepMRMD:0.85244132;iRNA_m5C:0.00046328784232319 3747 chr1 236925788 236925788 1 + C T LUAD 236925788 + 236925768 236925808 41 TCCTGGCGGAGGAGCTGCGTCGGGAGCTGCCCCCGGATCAG TCCTGGCGGAGGAGCTGCGTTGGGAGCTGCCCCCGGATCAG Direct Loss 0.960408875657846 0 0.9024092 0 prediction 0.920817751315693 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236925788 chr1:236925788 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_48427 0 0 0 0 1 chromatin 0.500231644002262 0 0.8048184 0.000463288004523443 hm5C_site_3747 DeepMRMD:0.8048184;iRNA_m5C:0.000463288004523443 3748 chr17 8225715 8225715 1 + C T rs373197054 8225715 + 8225695 8225735 41 TGCAGGAGGCACAGGGACTCCGGGAGACTCAGAGGGCGAAG TGCAGGAGGCACAGGGACTCTGGGAGACTCAGAGGGCGAAG Direct Loss 0.960404713739016 0 0.9205948 0 prediction 0.920809427478032 Functional Loss - ARHGEF15 ENSG00000198844 UTR3 Human protein_coding chr17:8225715 chr17:8225715 . . 0 21 hm5C_associated_SNPs_48428 0 0 0 0 0 exosome 0.500231928330567 0 0.8411896 0.000463856661133688 hm5C_site_3748 DeepMRMD:0.8411896;iRNA_m5C:0.000463856661133688 3749 chr20 31647768 31647768 1 + C G BLCA 31647768 + 31647748 31647788 41 GGTGGCGCTGGCCGTGAGCTCAAGGGGCACACCCATCCTTA GGTGGCGCTGGCCGTGAGCTGAAGGGGCACACCCATCCTTA Direct Loss 0.960404702101156 0 0.9298408 0 prediction 0.920809404202311 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31647768 chr20:31647768 stopgain 0.048 0 21 hm5C_associated_SNPs_48429 0 0 0 0 1 exosome 0.500231643920729 0 0.8596816 0.000463287841457438 hm5C_site_3749 DeepMRMD:0.8596816;iRNA_m5C:0.000463287841457438 3750 chr12 54396248 54396248 1 + C A HNSC 54396248 + 54396228 54396268 41 AACTGGATTCACGCCCGCTCCACGAGGAAGAAGCGCTGCCC AACTGGATTCACGCCCGCTCAACGAGGAAGAAGCGCTGCCC Direct Loss 0.960404434238175 0 0.28164172 0 prediction 0.92080886847635 Functional Loss - HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54396248 chr12:54396248 synonymous SNV . 0 21 hm5C_associated_SNPs_48430 0 0 1 0 1 chromatin 0.500231643925458 0 0 0.000463287850916538 hm5C_site_3750 DeepMRMD:0;iRNA_m5C:0.000463287850916538 3751 chr16 88781140 88781140 1 + C T rs2340976 88781140 + 88781120 88781160 41 CGCTGTGGCCAGGGGGCCTGCAGGAGGTGAGTCCCTGTCCC CGCTGTGGCCAGGGGGCCTGTAGGAGGTGAGTCCCTGTCCC Direct Loss 0.96039852005539 0 0.9140213 0 prediction 0.92079704011078 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781140 chr16:88781140 synonymous SNV . 0 21 hm5C_associated_SNPs_48431 0 0 1 0 1 Cytosol 0.500231643919543 0 0.8280426 0.000463287839085336 hm5C_site_3751 DeepMRMD:0.8280426;iRNA_m5C:0.000463287839085336 3752 chr18 7231560 7231560 1 + C T COAD 7231560 + 7231540 7231580 41 AGCTGAGCTTGTGCCGAAAGCTGGAGGTCCTGAGCTTGTCG AGCTGAGCTTGTGCCGAAAGTTGGAGGTCCTGAGCTTGTCG Direct Loss 0.960378726621875 0 0.87721884 0 prediction 0.92075745324375 Functional Loss - LRRC30 ENSG00000206422 CDS Human protein_coding chr18:7231560 chr18:7231560 synonymous SNV . 0 21 hm5C_associated_SNPs_48432 0 0 0 0 0 unknown 0.500231647355453 0 0.75443768 0.000463294710905338 hm5C_site_3752 DeepMRMD:0.75443768;iRNA_m5C:0.000463294710905338 3753 chr1 149871843 149871843 1 + C T COAD 149871843 + 149871823 149871863 41 GCTGTGGTGAGCTCTCGTTTCGAGGGACTGAGCCCCCTACA GCTGTGGTGAGCTCTCGTTTTGAGGGACTGAGCCCCCTACA Direct Loss 0.960372894773818 0 0.9552723 0 prediction 0.920745789547635 Functional Loss - BOLA1 ENSG00000178096 CDS Human protein_coding chr1:149871843 chr1:149871843 synonymous SNV . 0 21 hm5C_associated_SNPs_48433 0 0 1 0 0 Ribosome 0.500231643141789 0 0.9105446 0.000463286283578279 hm5C_site_3753 DeepMRMD:0.9105446;iRNA_m5C:0.000463286283578279 3754 chr1 114523943 114523943 1 + C T SKCM 114523943 + 114523923 114523963 41 GGTGGACAGCTCAGTATTCCCAGCAGAGGGGCTGATCCCCC GGTGGACAGCTCAGTATTCCTAGCAGAGGGGCTGATCCCCC Direct Loss 0.960345121789253 0 0.6892163 0 prediction 0.920690243578506 Functional Loss - OLFML3 ENSG00000116774 CDS Human protein_coding chr1:114523943 chr1:114523943 nonsynonymous SNV 0.962 5 21 hm5C_associated_SNPs_48434 0 0 1 0 0 exosome 0.500231643921092 0 0.3784326 0.000463287842184856 hm5C_site_3754 DeepMRMD:0.3784326;iRNA_m5C:0.000463287842184856 3755 chr8 9192395 9192395 1 + C G rs77410003 9192395 + 9192375 9192415 41 GGTAATGAGGGTGGAGTTCTCAGGAATAGGATTGGTGCTCT GGTAATGAGGGTGGAGTTCTGAGGAATAGGATTGGTGCTCT Direct Loss 0.960331643229051 0 0.9200472 0 prediction 0.920663286458102 Functional Loss - LOC157273 ENSG00000254235 ncRNA_exonic Human lincRNA chr8:9192395 chr8:9192395 . . 0 21 hm5C_associated_SNPs_48435 0 0 0 3 0 unknown 0.500231641794389 0 0.8400944 0.000463283588777896 hm5C_site_3755 DeepMRMD:0.8400944;iRNA_m5C:0.000463283588777896 3756 chr1 41289853 41289853 1 + C T rs571352655 41289853 + 41289833 41289873 41 GTGCGGCGGGCGCCGGTACCCGACGGAGCACCCTCCCGTTA GTGCGGCGGGCGCCGGTACCTGACGGAGCACCCTCCCGTTA Direct Loss 0.960325734607776 0 0.71561736 0 prediction 0.920651469215553 Functional Loss - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41289853 chr1:41289853 synonymous SNV . 0 21 hm5C_associated_SNPs_48436 0 0 0 0 2 chromatin 0.50023691245204 0 0.43123472 0.000473824904079656 hm5C_site_3756 DeepMRMD:0.43123472;iRNA_m5C:0.000473824904079656 3757 chr3 122296663 122296663 1 + C G rs59971113 122296663 + 122296643 122296683 41 GCCGGCCGGGAACCGTGGGGCGCGGAAGGCCTCCCGGCGCT GCCGGCCGGGAACCGTGGGGGGCGGAAGGCCTCCCGGCGCT Direct Loss 0.960323906732378 0 0.8780037 0 prediction 0.920647813464756 Functional Loss - PARP15 ENSG00000173200 CDS Human protein_coding chr3:122296663 chr3:122296663 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48437 0 0 0 0 1 exosome 0.500231643921425 0 0.7560074 0.000463287842850546 hm5C_site_3757 DeepMRMD:0.7560074;iRNA_m5C:0.000463287842850546 3758 chrX 30237294 30237294 1 + C T SKCM 30237294 + 30237274 30237314 41 CTCAGTTCCTGGGACTTTCCCAGGAGAAAGCTTCTGATGCC CTCAGTTCCTGGGACTTTCCTAGGAGAAAGCTTCTGATGCC Direct Loss 0.960323846322632 0 0.9367428 0 prediction 0.920647692645264 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30237294 chrX:30237294 synonymous SNV . 0 21 hm5C_associated_SNPs_48438 0 0 1 0 0 exosome 0.500231643920467 0 0.8734856 0.000463287840933857 hm5C_site_3758 DeepMRMD:0.8734856;iRNA_m5C:0.000463287840933857 3759 chr5 40692393 40692393 1 + C T BRCA 40692393 + 40692373 40692413 41 GTGGATGAGGCTGGTGGGAGCGGCAGGGCTGGGCCTGCCCC GTGGATGAGGCTGGTGGGAGTGGCAGGGCTGGGCCTGCCCC Direct Loss 0.960308821477407 0 0.902203 0 prediction 0.920617642954814 Functional Loss - PTGER4 ENSG00000171522 CDS Human protein_coding chr5:40692393 chr5:40692393 synonymous SNV . 0 21 hm5C_associated_SNPs_48439 0 0 0 0 0 Cytosol 0.500231630400883 0 0.804406 0.000463260801766729 hm5C_site_3759 DeepMRMD:0.804406;iRNA_m5C:0.000463260801766729 3760 chr6 45390482 45390482 1 + C G CESC 45390482 + 45390462 45390502 41 AGCAACAGCAGCAGCAGCAGCAGGAGGCGGCGGCGGCGGCT AGCAACAGCAGCAGCAGCAGGAGGAGGCGGCGGCGGCGGCT Direct Loss 0.960305171611413 0 0.8964023 0 prediction 0.920610343222827 Functional Loss - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45390482 chr6:45390482 nonsynonymous SNV 0.993 0 21 hm5C_associated_SNPs_48440 0 0 0 0 0 Cytosol 0.500231643921092 0 0.7928046 0.000463287842184856 hm5C_site_3760 DeepMRMD:0.7928046;iRNA_m5C:0.000463287842184856 3761 chr17 59489603 59489603 1 + C T HNSC 59489603 + 59489583 59489623 41 GGGTCTCCTGGGCACCCTCCCGGGAGCGCCTTCGGGGTGGA GGGTCTCCTGGGCACCCTCCTGGGAGCGCCTTCGGGGTGGA Direct Loss 0.960292609503627 0 0.92742956 0 prediction 0.920585219007253 Functional Loss - C17orf82 ENSG00000187013 CDS Human lincRNA chr17:59489603 chr17:59489603 synonymous SNV . 0 21 hm5C_associated_SNPs_48441 0 0 0 0 0 unknown 0.500231643921092 0 0.85485912 0.000463287842184856 hm5C_site_3761 DeepMRMD:0.85485912;iRNA_m5C:0.000463287842184856 3762 chr1 248059443 248059443 1 + C T SKCM 248059443 + 248059423 248059463 41 CGTGAGATGCCCGCCCTGATCCGGATGGCCTGCGTCAGCAC CGTGAGATGCCCGCCCTGATTCGGATGGCCTGCGTCAGCAC Direct Loss 0.960283335727742 0 0.9113544 0 prediction 0.920566671455484 Functional Loss - OR2W3 ENSG00000238243 CDS Human protein_coding chr1:248059443 chr1:248059443 synonymous SNV . 0 21 hm5C_associated_SNPs_48442 0 0 0 0 0 exosome 0.500231640069486 0 0.8227088 0.000463280138972566 hm5C_site_3762 DeepMRMD:0.8227088;iRNA_m5C:0.000463280138972566 3763 chr12 52369191 52369191 1 + C T rs114638064 52369191 + 52369171 52369211 41 AAAGTGGAGCTGGTCCCTGCCGGGAAGCCCTTCTACTGCCT AAAGTGGAGCTGGTCCCTGCTGGGAAGCCCTTCTACTGCCT Direct Loss 0.960273141815256 0 0.9164226 0 prediction 0.920546283630512 Functional Loss - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52369191 chr12:52369191 synonymous SNV . 0 21 hm5C_associated_SNPs_48443 0 0 0 0 1 Endoplasmic reticulum 0.500231643921093 0 0.8328452 0.000463287842185522 hm5C_site_3763 DeepMRMD:0.8328452;iRNA_m5C:0.000463287842185522 3764 chr5 132150010 132150010 1 + C T rs541082078 132150010 + 132149990 132150030 41 CCCCCGCCACGCTCCGCCTCCGGGCGGAGGAGCCCGGCCTG CCCCCGCCACGCTCCGCCTCTGGGCGGAGGAGCCCGGCCTG Direct Loss 0.960268536063562 0 0.9310119 0 prediction 0.920537072127124 Functional Loss - SOWAHA ENSG00000198944 CDS Human protein_coding chr5:132150010 chr5:132150010 nonsynonymous SNV 0.444 3 21 hm5C_associated_SNPs_48444 0 0 0 0 0 exosome 0.500231643921002 0 0.8620238 0.000463287842003002 hm5C_site_3764 DeepMRMD:0.8620238;iRNA_m5C:0.000463287842003002 3765 chr19 10202240 10202240 1 + C A UCEC 10202240 + 10202220 10202260 41 TCCTCCCCCCGCGCTGGGACCGGGACCCGGATCGCCGCAGC TCCTCCCCCCGCGCTGGGACAGGGACCCGGATCGCCGCAGC Direct Loss 0.960261535818349 0 0.89797914 0 prediction 0.920523071636698 Functional Loss - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10202240 chr19:10202240 synonymous SNV . 0 21 hm5C_associated_SNPs_48445 0 0 0 0 2 Ribosome 0.500231638233214 0 0.79595828 0.000463276466427187 hm5C_site_3765 DeepMRMD:0.79595828;iRNA_m5C:0.000463276466427187 3766 chr14 102027875 102027875 1 + C T UCEC 102027875 + 102027855 102027895 41 CGGTTGGTGGTCGGAGAGGGCGAGGGGTCCCAGGGGGCTTC CGGTTGGTGGTCGGAGAGGGTGAGGGGTCCCAGGGGGCTTC Direct Loss 0.960256256968773 0 0.92570305 0 prediction 0.920512513937547 Functional Loss - DIO3 ENSG00000197406 CDS Human protein_coding chr14:102027875 chr14:102027875 unknown . 0 21 hm5C_associated_SNPs_48446 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8514061 0.000463287842184856 hm5C_site_3766 DeepMRMD:0.8514061;iRNA_m5C:0.000463287842184856 3767 chr10 104392069 104392069 1 + C T rs181690906 104392069 + 104392049 104392089 41 TCTGGGGGAGCAGGGTAAGGCAGGAGGAAGTGGGTGAGCTC TCTGGGGGAGCAGGGTAAGGTAGGAGGAAGTGGGTGAGCTC Direct Loss 0.960240211220427 0 0.90075177 0 prediction 0.920480422440854 Functional Loss - SUFU ENSG00000107882 UTR3 Human protein_coding chr10:104392069 chr10:104392069 . . 0 21 hm5C_associated_SNPs_48447 1 0 1 0 0 chromatin 0.500231643921092 0 0.80150354 0.000463287842184856 hm5C_site_3767 DeepMRMD:0.80150354;iRNA_m5C:0.000463287842184856 Medulloblastoma Medulloblastoma 3768 chr8 13425059 13425059 1 + C G rs182017068 13425059 + 13425039 13425079 41 ACATGAGGACAACGCCAAAACAGGAGGCAGCAGCTAAGCAA ACATGAGGACAACGCCAAAAGAGGAGGCAGCAGCTAAGCAA Direct Loss 0.960236129517598 0 0.6353488 0 prediction 0.920472259035195 Functional Loss - C8orf48 ENSG00000164743 CDS Human protein_coding chr8:13425059 chr8:13425059 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48448 0 0 0 0 0 exosome 0.500231643921092 0 0.2706976 0.000463287842183302 hm5C_site_3768 DeepMRMD:0.2706976;iRNA_m5C:0.000463287842183302 3769 chr9 96438029 96438029 1 + C T STAD 96438029 + 96438009 96438049 41 GGTACACGGGTGGCTTCCATCGAGACCGGGCTGGCGGCTGC GGTACACGGGTGGCTTCCATTGAGACCGGGCTGGCGGCTGC Direct Loss 0.960235871031175 0 0.91880834 0 prediction 0.92047174206235 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96438029 chr9:96438029 synonymous SNV . 0 21 hm5C_associated_SNPs_48449 0 0 1 0 2 chromatin 0.500231643921093 0 0.83761668 0.000463287842185078 hm5C_site_3769 DeepMRMD:0.83761668;iRNA_m5C:0.000463287842185078 3770 chr19 9204616 9204616 1 + C T BLCA 9204616 + 9204596 9204636 41 ATGAAGGTCCCCTCTGCAGGCGGCAGGAAGAAAGCCTTCTC ATGAAGGTCCCCTCTGCAGGTGGCAGGAAGAAAGCCTTCTC Direct Loss 0.960230531955302 0 0.32964244 0 prediction 0.920461063910604 Functional Loss - OR1M1 ENSG00000170929 CDS Human protein_coding chr19:9204616 chr19:9204616 synonymous SNV . 0 21 hm5C_associated_SNPs_48450 0 0 0 0 0 unknown 0.500231347304812 0 0 0.00046269460962356 hm5C_site_3770 DeepMRMD:0;iRNA_m5C:0.00046269460962356 3771 chr7 100320333 100320333 1 + C T STAD 100320333 + 100320313 100320353 41 GCAGGGCCTGGCCCTGCTGTCGGAAGCTGTCCTGCGGGGCC GCAGGGCCTGGCCCTGCTGTTGGAAGCTGTCCTGCGGGGCC Direct Loss 0.960230274921956 0 0.93218327 0 prediction 0.920460549843912 Functional Loss - EPO ENSG00000130427 CDS Human protein_coding chr7:100320333 chr7:100320333 nonsynonymous SNV 0.984 0 21 hm5C_associated_SNPs_48451 0 0 0 0 1 exosome 0.500231643921092 0 0.86436654 0.000463287842184856 hm5C_site_3771 DeepMRMD:0.86436654;iRNA_m5C:0.000463287842184856 3772 chrX 139866504 139866504 1 + G A SKCM 139866504 - 139866484 139866524 41 GGTTGGAAGACGTGGATTTTCTGGAAGACGTACCTTTGTTG GGTTGGAAGACGTGGATTTTTTGGAAGACGTACCTTTGTTG Direct Loss 0.960225679712035 0 0.3570029 0 prediction 0.920451359424069 Functional Loss - CDR1 ENSG00000184258 CDS Human protein_coding chrX:139866504 chrX:139866504 synonymous SNV . 0 21 hm5C_associated_SNPs_48452 0 0 0 0 0 exosome 0.500231642664804 0 0 0.000463285329607599 hm5C_site_3772 DeepMRMD:0;iRNA_m5C:0.000463285329607599 3773 chr16 614874 614874 1 + C A LUSC 614874 + 614854 614894 41 CCTGGGACAGTTGGGGCCCGCGGGGGGCCTGGCCCCGAGAC CCTGGGACAGTTGGGGCCCGAGGGGGGCCTGGCCCCGAGAC Direct Loss 0.960206480476231 0 0.9340953 0 prediction 0.920412960952462 Functional Loss - PRR35 ENSG00000161992 CDS Human protein_coding chr16:614874 chr16:614874 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48453 0 0 0 0 0 exosome 0.500231643921092 0 0.8681906 0.000463287842184856 hm5C_site_3773 DeepMRMD:0.8681906;iRNA_m5C:0.000463287842184856 3774 chr18 61225678 61225678 1 + C G CESC 61225678 + 61225658 61225698 41 AAGTGCTGGCTGACAGCTCTCTGGAGGGGCAGAAAAAAACG AAGTGCTGGCTGACAGCTCTGTGGAGGGGCAGAAAAAAACG Direct Loss 0.960205581130882 0 0.43347168 0 prediction 0.920411162261763 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61225678 chr18:61225678 nonsynonymous SNV 0.960 1 21 hm5C_associated_SNPs_48454 0 0 0 0 2 exosome 0.500231643921132 0 0 0.000463287842263904 hm5C_site_3774 DeepMRMD:0;iRNA_m5C:0.000463287842263904 3775 chr19 50983930 50983930 1 + C G rs10409679 50983930 + 50983910 50983950 41 GTGTCGGTGGTGACGCACCCCGGGGGCTGCCGGGGCCATGA GTGTCGGTGGTGACGCACCCGGGGGGCTGCCGGGGCCATGA Direct Loss 0.960197819207812 0 0.89786804 0 prediction 0.920395638415624 Functional Loss - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983930 chr19:50983930 synonymous SNV . 0 21 hm5C_associated_SNPs_48455 0 0 0 0 1 Cytosol 0.500231643921174 0 0.79573608 0.000463287842348281 hm5C_site_3775 DeepMRMD:0.79573608;iRNA_m5C:0.000463287842348281 3776 chr10 17271484 17271484 1 + G A SKCM 17271484 - 17271464 17271504 41 CGGCTGGAGCTCGGCCGGCTCGCGGTGCCCGGGCCGCCGAA CGGCTGGAGCTCGGCCGGCTTGCGGTGCCCGGGCCGCCGAA Direct Loss 0.960190313819487 0 0.88845855 0 prediction 0.920380627638973 Functional Loss - VIM ENSG00000026025 CDS Human protein_coding chr10:17271484 chr10:17271484 synonymous SNV . 0 21 hm5C_associated_SNPs_48456 0 0 1 0 0 Ribosome 0.500231643921092 0 0.7769171 0.000463287842184856 hm5C_site_3776 DeepMRMD:0.7769171;iRNA_m5C:0.000463287842184856 3777 chr15 45879699 45879699 1 + C A UCEC 45879699 + 45879679 45879719 41 TGACACGGCCACCCTACTGCCTGGAGGCCGGGGAGCCGACG TGACACGGCCACCCTACTGCATGGAGGCCGGGGAGCCGACG Direct Loss 0.960186750790382 0 0.66525745 0 prediction 0.920373501580764 Functional Loss - BLOC1S6 ENSG00000104164 CDS Human protein_coding chr15:45879699 chr15:45879699 nonsynonymous SNV 0.053 1 21 hm5C_associated_SNPs_48457 0 0 1 0 1 Cytosol 0.500231643915987 0 0.3305149 0.000463287831973025 hm5C_site_3777 DeepMRMD:0.3305149;iRNA_m5C:0.000463287831973025 3778 chrX 55478977 55478977 1 + C A LUAD 55478977 + 55478957 55478997 41 CCCCGAGGAAGACCCGAGCACTCCAGAGGAGGCCTCTACCA CCCCGAGGAAGACCCGAGCAATCCAGAGGAGGCCTCTACCA Direct Loss 0.960178182313771 0 0.9409703 0 prediction 0.920356364627543 Functional Loss - MAGEH1 ENSG00000187601 CDS Human protein_coding chrX:55478977 chrX:55478977 nonsynonymous SNV 0.168 1 21 hm5C_associated_SNPs_48458 0 0 0 0 0 exosome 0.50023164392139 0 0.8819406 0.00046328784278038 hm5C_site_3778 DeepMRMD:0.8819406;iRNA_m5C:0.00046328784278038 3779 chr1 101198104 101198104 1 + C T PRAD 101198104 + 101198084 101198124 41 TGGAGCAGGCAGCTCCCTAACGGGGAGCTACAGCCTCTTTC TGGAGCAGGCAGCTCCCTAATGGGGAGCTACAGCCTCTTTC Direct Loss 0.960148599877567 0 0.9426242 0 prediction 0.920297199755135 Functional Loss - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101198104 chr1:101198104 synonymous SNV . 0 21 hm5C_associated_SNPs_48459 0 0 0 0 0 exosome 0.500231643921092 0 0.8852484 0.000463287842184856 hm5C_site_3779 DeepMRMD:0.8852484;iRNA_m5C:0.000463287842184856 3780 chr13 49281679 49281679 1 + C G rs61735169 49281679 + 49281659 49281699 41 TCGGGGCTGCGGGTTTCTCACAGGAAGGCACTGACCACCAT TCGGGGCTGCGGGTTTCTCAGAGGAAGGCACTGACCACCAT Direct Loss 0.960147981688411 0 0.7872611 0 prediction 0.920295963376822 Functional Loss - CYSLTR2 ENSG00000152207 CDS Human protein_coding chr13:49281679 chr13:49281679 nonsynonymous SNV 0.634 0 21 hm5C_associated_SNPs_48460 0 0 0 0 0 exosome 0.500231643918515 0 0.5745222 0.000463287837030091 hm5C_site_3780 DeepMRMD:0.5745222;iRNA_m5C:0.000463287837030091 3781 chr20 45354882 45354882 1 + C T BRCA 45354882 + 45354862 45354902 41 CTGGGCCCCCTCTGCCCGCTCGGGGGCATGCACTGCTGCGC CTGGGCCCCCTCTGCCCGCTTGGGGGCATGCACTGCTGCGC Direct Loss 0.960144313746701 0 0.9563393 0 prediction 0.920288627493401 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45354882 chr20:45354882 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_48461 0 0 0 0 1 Nucleus 0.500231609697102 0 0.9126786 0.000463219394203795 hm5C_site_3781 DeepMRMD:0.9126786;iRNA_m5C:0.000463219394203795 3782 chr8 87111268 87111268 1 + C T LGG 87111268 + 87111248 87111288 41 GCTACCTGGAGGGCCTGGTTCGAGGATGCAAGGCCAGCCTC GCTACCTGGAGGGCCTGGTTTGAGGATGCAAGGCCAGCCTC Direct Loss 0.9601329490198 0 0.9489823 0 prediction 0.920265898039599 Functional Loss - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87111268 chr8:87111268 stopgain 0.966 1 21 hm5C_associated_SNPs_48462 0 0 0 0 1 Cytosol 0.500231643921092 0 0.8979646 0.000463287842184856 hm5C_site_3782 DeepMRMD:0.8979646;iRNA_m5C:0.000463287842184856 3783 chr1 156594436 156594436 1 + C A LUSC 156594436 + 156594416 156594456 41 TGTAACGCGGGCTGGCTGCTCGAGGGCTCCGTGCGCTACCC TGTAACGCGGGCTGGCTGCTAGAGGGCTCCGTGCGCTACCC Direct Loss 0.960128012905199 0 0.90910363 0 prediction 0.920256025810399 Functional Loss - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156594436 chr1:156594436 synonymous SNV . 0 21 hm5C_associated_SNPs_48463 0 0 1 0 1 exosome 0.500231643916801 0 0.81820726 0.000463287833601944 hm5C_site_3783 DeepMRMD:0.81820726;iRNA_m5C:0.000463287833601944 3784 chr16 28507373 28507373 1 + C T LUSC 28507373 + 28507353 28507393 41 GCCTCGGGAGGGGAGGAGGCCGGGATAGCCTCAGGCGGGGA GCCTCGGGAGGGGAGGAGGCTGGGATAGCCTCAGGCGGGGA Direct Loss 0.960122471126063 0 0.8953401 0 prediction 0.920244942252126 Functional Loss - APOBR ENSG00000184730 CDS Human protein_coding chr16:28507373 chr16:28507373 synonymous SNV . 0 21 hm5C_associated_SNPs_48464 0 0 1 0 0 exosome 0.50023164392225 0 0.7906802 0.000463287844499449 hm5C_site_3784 DeepMRMD:0.7906802;iRNA_m5C:0.000463287844499449 3785 chr20 20350277 20350277 1 + C G CESC 20350277 + 20350257 20350297 41 CGTTCGCCAGCAAGGGCGCTCAGGAGCGCCACCTGCGCCTG CGTTCGCCAGCAAGGGCGCTGAGGAGCGCCACCTGCGCCTG Direct Loss 0.960116368739771 0 0.93923575 0 prediction 0.920232737479542 Functional Loss - INSM1 ENSG00000173404 CDS Human protein_coding chr20:20350277 chr20:20350277 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_48465 0 0 0 0 0 Endoplasmic reticulum 0.500231643919216 0 0.8784715 0.000463287838432525 hm5C_site_3785 DeepMRMD:0.8784715;iRNA_m5C:0.000463287838432525 3786 chr15 64426932 64426932 1 + C T CESC 64426932 + 64426912 64426952 41 AAGCCACACTGCAGAAGAAGCGGGAGGCCGAGGCTCGGCTG AAGCCACACTGCAGAAGAAGTGGGAGGCCGAGGCTCGGCTG Direct Loss 0.960116099518747 0 0.94016707 0 prediction 0.920232199037495 Functional Loss - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64426932 chr15:64426932 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_48466 0 0 1 0 2 Ribosome 0.500231643921092 0 0.88033414 0.000463287842184856 hm5C_site_3786 DeepMRMD:0.88033414;iRNA_m5C:0.000463287842184856 3787 chr12 81101955 81101955 1 + C T BLCA 81101955 + 81101935 81101975 41 ACCTGCTGCACCGGCTGGATCAGCAGGAGAAGATGCAGGAG ACCTGCTGCACCGGCTGGATTAGCAGGAGAAGATGCAGGAG Direct Loss 0.960099941035948 0 0.9000593 0 prediction 0.920199882071896 Functional Loss - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81101955 chr12:81101955 stopgain 1.000 1 21 hm5C_associated_SNPs_48467 0 0 0 0 1 unknown 0.500231643921092 0 0.8001186 0.000463287842184856 hm5C_site_3787 DeepMRMD:0.8001186;iRNA_m5C:0.000463287842184856 3788 chr11 13031288 13031288 1 + C T rs61879069 13031288 + 13031268 13031308 41 AGCCGGCGGCTGGGGTCGGCCGGCGACCCGCATGGCCCGGG AGCCGGCGGCTGGGGTCGGCTGGCGACCCGCATGGCCCGGG Direct Loss 0.960071662821961 0 0.74893963 0 prediction 0.920143325643922 Functional Loss - RASSF10 ENSG00000189431 ncRNA_exonic Human protein_coding chr11:13031288 chr11:13031288 . . 0 21 hm5C_associated_SNPs_48468 0 0 0 0 0 exosome 0.500231643922476 0 0.49787926 0.000463287844952864 hm5C_site_3788 DeepMRMD:0.49787926;iRNA_m5C:0.000463287844952864 3789 chr12 122361822 122361822 1 + C T UCEC 122361822 + 122361802 122361842 41 AGTCCAAAGCAGGGATCTCCCGGGAGTCACTGGTGTCCAGC AGTCCAAAGCAGGGATCTCCTGGGAGTCACTGGTGTCCAGC Direct Loss 0.960068569961167 0 0.937261 0 prediction 0.920137139922333 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122361822 chr12:122361822 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_48469 0 0 0 0 1 chromatin 0.500231643921093 0 0.874522 0.000463287842185744 hm5C_site_3789 DeepMRMD:0.874522;iRNA_m5C:0.000463287842185744 3790 chr21 46047329 46047329 1 + C A LUSC 46047329 + 46047309 46047349 41 CCTGCACGCCCTCGTGCTGCCAGCAGTCTAGCTGCCAGCCG CCTGCACGCCCTCGTGCTGCAAGCAGTCTAGCTGCCAGCCG Direct Loss 0.960064508508846 0 0.47413525 0 prediction 0.920129017017691 Functional Loss - KRTAP10-9 ENSG00000221837 CDS Human protein_coding chr21:46047329 chr21:46047329 nonsynonymous SNV 0.926 0 21 hm5C_associated_SNPs_48470 0 0 0 0 0 unknown 0.500375504280207 0 0 0.000751008560414768 hm5C_site_3790 DeepMRMD:0;iRNA_m5C:0.000751008560414768 3791 chr4 3495341 3495341 1 + C G rs549711473 3495341 + 3495321 3495361 41 CTGTGTTCTGTGGGAGGGACCGGGGGTCTCCCGGAGAGGGG CTGTGTTCTGTGGGAGGGACGGGGGGTCTCCCGGAGAGGGG Direct Loss 0.960062790212823 0 0.9323253 0 prediction 0.920125580425645 Functional Loss - DOK7 ENSG00000175920 UTR3 Human protein_coding chr4:3495341 chr4:3495341 . . 0 21 hm5C_associated_SNPs_48471 0 0 1 0 0 nucleus 0.500231576802855 0 0.8646506 0.000463153605709143 hm5C_site_3791 DeepMRMD:0.8646506;iRNA_m5C:0.000463153605709143 3792 chr1 212799391 212799391 1 + C T LUAD 212799391 + 212799371 212799411 41 AGCAGACATGGATGCAGCAGCGGGACCTCCCGTCTCCACCC AGCAGACATGGATGCAGCAGTGGGACCTCCCGTCTCCACCC Direct Loss 0.96006150304801 0 0.8978318 0 prediction 0.920123006096021 Functional Loss - FAM71A ENSG00000162771 CDS Human protein_coding chr1:212799391 chr1:212799391 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48472 0 0 0 0 0 exosome 0.500231644700294 0 0.7956636 0.000463289400587596 hm5C_site_3792 DeepMRMD:0.7956636;iRNA_m5C:0.000463289400587596 3793 chr6 3850118 3850118 1 + C T KICH 3850118 + 3850098 3850138 41 TCAAGAAGCGCGAAAGGCAGCGGGAGCAGATGGAGGTGCTG TCAAGAAGCGCGAAAGGCAGTGGGAGCAGATGGAGGTGCTG Direct Loss 0.960025756689201 0 0.89729077 0 prediction 0.920051513378401 Functional Loss - FAM50B ENSG00000145945 CDS Human protein_coding chr6:3850118 chr6:3850118 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_48473 0 0 0 0 1 exosome 0.500231644077025 0 0.79458154 0.000463288154050945 hm5C_site_3793 DeepMRMD:0.79458154;iRNA_m5C:0.000463288154050945 3794 chr1 1447693 1447693 1 + C T rs541906634 1447693 + 1447673 1447713 41 AAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTT AAGGGCCCCAAGGGTGAAGGTGCGGGGCCGCCGCCGCCTTT Direct Loss 0.960022297088157 0 0.90658 0 prediction 0.920044594176314 Functional Loss - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1447693 chr1:1447693 synonymous SNV . 0 21 hm5C_associated_SNPs_48474 0 0 1 0 0 Ribosome 0.500231643921092 0 0.81316 0.000463287842184856 hm5C_site_3794 DeepMRMD:0.81316;iRNA_m5C:0.000463287842184856 3795 chr19 39788886 39788886 1 + C A LUSC 39788886 + 39788866 39788906 41 CCACAGCAGGGCCCAGGCCCCGGGGCCGCCTCCACCACTGG CCACAGCAGGGCCCAGGCCCAGGGGCCGCCTCCACCACTGG Direct Loss 0.960020427796099 0 0.9360911 0 prediction 0.920040855592198 Functional Loss - IFNL1 ENSG00000182393 CDS Human protein_coding chr19:39788886 chr19:39788886 synonymous SNV . 0 21 hm5C_associated_SNPs_48475 0 0 0 0 2 exosome 0.500231643921093 0 0.8721822 0.000463287842185078 hm5C_site_3795 DeepMRMD:0.8721822;iRNA_m5C:0.000463287842185078 3796 chr16 68772218 68772218 1 + C T BRCA 68772218 + 68772198 68772238 41 AGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGCCCTGCCAC AGGTCTCCTCTTGGCTCTGCTAGGAGCCGGAGCCCTGCCAC Direct Loss 0.960008924777461 0 0.9262074 0 prediction 0.920017849554923 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68772218 chr16:68772218 stopgain 0.645 0 21 hm5C_associated_SNPs_48476 0 0 1 0 2 Nucleus 0.500231643920107 0 0.8524148 0.000463287840214432 hm5C_site_3796 DeepMRMD:0.8524148;iRNA_m5C:0.000463287840214432 3797 chr16 19127313 19127313 1 + C T KIRC 19127313 + 19127293 19127333 41 CCCCAGCTTCTCCGGGCCTACGGGGGTCCCCGCTACCTTGC CCCCAGCTTCTCCGGGCCTATGGGGGTCCCCGCTACCTTGC Direct Loss 0.959988727566583 0 0.93048346 0 prediction 0.919977455133166 Functional Loss - ITPRIPL2 ENSG00000205730 CDS Human protein_coding chr16:19127313 chr16:19127313 synonymous SNV . 0 21 hm5C_associated_SNPs_48477 0 0 1 0 0 Ribosome 0.500231643921092 0 0.86096692 0.000463287842184856 hm5C_site_3797 DeepMRMD:0.86096692;iRNA_m5C:0.000463287842184856 3798 chr1 223566955 223566955 1 + C T READ 223566955 + 223566935 223566975 41 TCCACCGCGTGCTCCCGGGCCGGGACTCCGGGTGCGGAGAG TCCACCGCGTGCTCCCGGGCTGGGACTCCGGGTGCGGAGAG Direct Loss 0.959971929089952 0 0.88720304 0 prediction 0.919943858179905 Functional Loss - CCDC185 ENSG00000178395 CDS Human protein_coding chr1:223566955 chr1:223566955 synonymous SNV . 0 21 hm5C_associated_SNPs_48478 0 0 0 0 0 unknown 0.500231643966091 0 0.77440608 0.000463287932181089 hm5C_site_3798 DeepMRMD:0.77440608;iRNA_m5C:0.000463287932181089 3799 chr3 52828887 52828887 1 + C T rs528961799 52828887 + 52828867 52828907 41 CTTGGCAGCCTCTGGCTTCCCGAGAAGCCCCTTTCGGCTGC CTTGGCAGCCTCTGGCTTCCTGAGAAGCCCCTTTCGGCTGC Direct Loss 0.959970200436658 0 0.8497339 0 prediction 0.919940400873316 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52828887 chr3:52828887 nonsynonymous SNV 0.143 0 21 hm5C_associated_SNPs_48479 0 0 1 0 1 cytosol 0.500231643921303 0 0.6994678 0.000463287842605853 hm5C_site_3799 DeepMRMD:0.6994678;iRNA_m5C:0.000463287842605853 3800 chr3 32409378 32409378 1 + C T rs138983063 32409378 + 32409358 32409398 41 CCCCAGGGCCTGTGCTTTAACGGCAGTGCCTTCGTCTTGTA CCCCAGGGCCTGTGCTTTAATGGCAGTGCCTTCGTCTTGTA Direct Loss 0.959958898248572 0 0.8751643 0 prediction 0.919917796497145 Functional Loss - CMTM8 ENSG00000170293 CDS Human protein_coding chr3:32409378 chr3:32409378 synonymous SNV . 0 21 hm5C_associated_SNPs_48480 0 0 0 0 1 Nucleus 0.500231644015884 0 0.7503286 0.000463288031768538 hm5C_site_3800 DeepMRMD:0.7503286;iRNA_m5C:0.000463288031768538 3801 chr1 9781865 9781865 1 + C A STAD 9781865 + 9781845 9781885 41 CCCTGCGCTTCGGCCTCATCCTGGAGGCCTACTGCAGGGGC CCCTGCGCTTCGGCCTCATCATGGAGGCCTACTGCAGGGGC Direct Loss 0.959947305376095 0 0.8953382 0 prediction 0.919894610752189 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781865 chr1:9781865 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_48481 0 0 0 0 2 Nucleus 0.50023163266388 0 0.7906764 0.000463265327760753 hm5C_site_3801 DeepMRMD:0.7906764;iRNA_m5C:0.000463265327760753 3802 chr11 65721175 65721175 1 + C T LUAD 65721175 + 65721155 65721195 41 ACCCAGAGGGAGCCGGGGCCCTGGGGCGGCCCAGCGCAAGC ACCCAGAGGGAGCCGGGGCCTTGGGGCGGCCCAGCGCAAGC Direct Loss 0.959942682722676 0 0.8230033 0 prediction 0.919885365445351 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65721175 chr11:65721175 unknown 0.001 0 21 hm5C_associated_SNPs_48482 0 0 0 0 1 exosome 0.500231643921093 0 0.6460066 0.000463287842185078 hm5C_site_3802 DeepMRMD:0.6460066;iRNA_m5C:0.000463287842185078 3803 chr7 141833932 141833932 1 + C T CESC 141833932 + 141833912 141833952 41 AGACTTGGCCCATCTTCACCCGGGACGCTACCCCCACCGAG AGACTTGGCCCATCTTCACCTGGGACGCTACCCCCACCGAG Direct Loss 0.959924769565681 0 0.9289865 0 prediction 0.919849539131361 Functional Loss - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141833932 chr7:141833932 nonsynonymous SNV 0.233 4 21 hm5C_associated_SNPs_48483 0 0 0 0 1 exosome 0.500231643921092 0 0.857973 0.000463287842184856 hm5C_site_3803 DeepMRMD:0.857973;iRNA_m5C:0.000463287842184856 3804 chr4 186064443 186064443 1 + C A rs183128370 186064443 + 186064423 186064463 41 CCCCTAGCGTCGCGCAGGGTCGGGGACTGCGCGGCGGTGCC CCCCTAGCGTCGCGCAGGGTAGGGGACTGCGCGGCGGTGCC Direct Loss 0.959909740382968 0 0.91533744 0 prediction 0.919819480765935 Functional Loss - SLC25A4 ENSG00000151729 UTR5 Human protein_coding chr4:186064443 chr4:186064443 . . 0 21 hm5C_associated_SNPs_48484 1 0 1 0 0 Cytosol 0.500231784271076 0 0.83067488 0.00046356854215257 hm5C_site_3804 DeepMRMD:0.83067488;iRNA_m5C:0.00046356854215257 Progressive External Ophthalmoplegia with Mitochondrial DNA Deletions Progressive External Ophthalmoplegia with Mitochondrial DNA Deletions 3805 chr1 12855945 12855945 1 + C T SKCM 12855945 + 12855925 12855965 41 GTGGGCTGAGCAAGTTAAGCCTGGAGACGTATCCTGCCCCT GTGGGCTGAGCAAGTTAAGCTTGGAGACGTATCCTGCCCCT Direct Loss 0.959892147142335 0 0.7904266 0 prediction 0.919784294284669 Functional Loss - PRAMEF1 ENSG00000116721 CDS Human protein_coding chr1:12855945 chr1:12855945 synonymous SNV . 0 21 hm5C_associated_SNPs_48485 0 0 0 0 0 unknown 0.500292234256821 0 0.5808532 0.000584468513641356 hm5C_site_3805 DeepMRMD:0.5808532;iRNA_m5C:0.000584468513641356 3806 chr7 5112676 5112676 1 + C T COAD 5112676 + 5112656 5112696 41 GGGAGGAAGACCTGCGGTTCCGTGAGAGGCGTCCAGGGCTG GGGAGGAAGACCTGCGGTTCTGTGAGAGGCGTCCAGGGCTG Direct Loss 0.959870096829513 0 0.8509597 0 prediction 0.919740193659025 Functional Loss - RBAKDN ENSG00000272968 CDS Human protein_coding chr7:5112676 chr7:5112676 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48486 0 0 0 0 0 unknown 0.500230073786701 0 0.7019194 0.00046014757340207 hm5C_site_3806 DeepMRMD:0.7019194;iRNA_m5C:0.00046014757340207 3807 chr16 103923 103923 1 + C G rs2562145 103923 + 103903 103943 41 GCCCTGGAGGAGACGGAGGCCGCGGGTGGGCCCGAGGCGCA GCCCTGGAGGAGACGGAGGCGGCGGGTGGGCCCGAGGCGCA Direct Loss 0.959869754876689 0 0.8977585 0 prediction 0.919739509753378 Functional Loss - SNRNP25 ENSG00000161981 UTR5 Human protein_coding chr16:103923 chr16:103923 . . 0 21 hm5C_associated_SNPs_48487 0 0 1 0 0 Ribosome 0.500231643921055 0 0.795517 0.000463287842110915 hm5C_site_3807 DeepMRMD:0.795517;iRNA_m5C:0.000463287842110915 3808 chr19 36616653 36616653 1 + C A LUSC 36616653 + 36616633 36616673 41 CGTGACGGTGGGGGACTTCCCGGAGGAGGACTACGGGTTGG CGTGACGGTGGGGGACTTCCAGGAGGAGGACTACGGGTTGG Direct Loss 0.959857839296254 0 0.9287205 0 prediction 0.919715678592507 Functional Loss - TBCB ENSG00000105254 CDS Human protein_coding chr19:36616653 chr19:36616653 nonsynonymous SNV 0.755 5 21 hm5C_associated_SNPs_48488 0 0 1 0 0 Ribosome 0.500231643921092 0 0.857441 0.000463287842184856 hm5C_site_3808 DeepMRMD:0.857441;iRNA_m5C:0.000463287842184856 3809 chr20 34828396 34828396 1 + C T rs149423857 34828396 + 34828376 34828416 41 CCAGAGATGAAGCCCAGAGCCGGGACAGAGATCCGCTTCTC CCAGAGATGAAGCCCAGAGCTGGGACAGAGATCCGCTTCTC Direct Loss 0.959836480105766 0 0.8616395 0 prediction 0.919672960211532 Functional Loss - AAR2 ENSG00000131043 CDS Human protein_coding chr20:34828396 chr20:34828396 synonymous SNV . 0 21 hm5C_associated_SNPs_48489 0 0 1 0 0 Ribosome 0.500231625213959 0 0.723279 0.000463250427918505 hm5C_site_3809 DeepMRMD:0.723279;iRNA_m5C:0.000463250427918505 3810 chr6 2766012 2766012 1 + C T rs200851664 2766012 + 2765992 2766032 41 GGGCACGCGGAGCCCGCGGCCGGGTCGCACCGCGCCGGGGA GGGCACGCGGAGCCCGCGGCTGGGTCGCACCGCGCCGGGGA Direct Loss 0.95982853085164 0 0.9245298 0 prediction 0.91965706170328 Functional Loss - WRNIP1 ENSG00000124535 CDS Human protein_coding chr6:2766012 chr6:2766012 synonymous SNV . 0 21 hm5C_associated_SNPs_48490 0 0 1 0 0 Ribosome 0.500231643832745 0 0.8490596 0.000463287665490197 hm5C_site_3810 DeepMRMD:0.8490596;iRNA_m5C:0.000463287665490197 3811 chr10 134000422 134000422 1 + C T rs61865793 134000422 + 134000402 134000442 41 GGGCCCAGCGGGGGCGGGACCGGAACGGAGCCGTGCGGCCC GGGCCCAGCGGGGGCGGGACTGGAACGGAGCCGTGCGGCCC Direct Loss 0.959826983427917 0 0.9042211 0 prediction 0.919653966855835 Functional Loss - DPYSL4 ENSG00000151640 UTR5 Human protein_coding chr10:134000422 chr10:134000422 . . 0 21 hm5C_associated_SNPs_48491 0 0 0 0 0 Endoplasmic reticulum 0.500231643899658 0 0.8084422 0.000463287799315593 hm5C_site_3811 DeepMRMD:0.8084422;iRNA_m5C:0.000463287799315593 3812 chr1 16356971 16356971 1 + C T rs375233250 16356971 + 16356951 16356991 41 GGCAGGGGCTGCAGCCTTCTCAGGGGCTGTGACCCACACCA GGCAGGGGCTGCAGCCTTCTTAGGGGCTGTGACCCACACCA Direct Loss 0.959820857796434 0 0.9639883 0 prediction 0.919641715592868 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16356971 chr1:16356971 nonsynonymous SNV 0.971 5 21 hm5C_associated_SNPs_48492 0 0 0 0 1 Endoplasmic reticulum 0.50023164391854 0 0.9279766 0.000463287837079385 hm5C_site_3812 DeepMRMD:0.9279766;iRNA_m5C:0.000463287837079385 3813 chr3 16343237 16343237 1 + C T COAD 16343237 + 16343217 16343257 41 GTGTTGATTGCAGGAGGAGTCGGAATTAACCCTCTGCTTTC GTGTTGATTGCAGGAGGAGTTGGAATTAACCCTCTGCTTTC Direct Loss 0.959816722292023 0 0.90560335 0 prediction 0.919633444584045 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16343237 chr3:16343237 synonymous SNV . 0 21 hm5C_associated_SNPs_48493 0 0 1 0 0 Ribosome 0.500228910229579 0 0.8112067 0.000457820459158986 hm5C_site_3813 DeepMRMD:0.8112067;iRNA_m5C:0.000457820459158986 3814 chr8 38065106 38065106 1 + C G BLCA 38065106 + 38065086 38065126 41 GGCAAATACTGCCTCATACTCAGGGGCTTATTATGCACCTG GGCAAATACTGCCTCATACTGAGGGGCTTATTATGCACCTG Direct Loss 0.959813917071012 0 0.9706514 0 prediction 0.919627834142025 Functional Loss - BAG4 ENSG00000156735 CDS Human protein_coding chr8:38065106 chr8:38065106 stopgain 0.997 0 21 hm5C_associated_SNPs_48494 0 0 1 0 0 Ribosome 0.500231643182689 0 0.9413028 0.000463286365378623 hm5C_site_3814 DeepMRMD:0.9413028;iRNA_m5C:0.000463286365378623 3815 chr20 49493110 49493110 1 + C T SKCM 49493110 + 49493090 49493130 41 CTGTGGACGCCGGGGAAGCACAGCACCACCCCCGCACCTGC CTGTGGACGCCGGGGAAGCATAGCACCACCCCCGCACCTGC Direct Loss 0.959803759888686 0 0.30062598 0 prediction 0.919607519777373 Functional Loss - BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49493110 chr20:49493110 stopgain 0.000 0 21 hm5C_associated_SNPs_48495 0 0 0 0 1 exosome 0.500231643921111 0 0 0.00046328784222216 hm5C_site_3815 DeepMRMD:0;iRNA_m5C:0.00046328784222216 3816 chrX 129546565 129546565 1 + C A COAD 129546565 + 129546545 129546585 41 ACTCTGGTGGAGCAGAGGACCTAGAGAGGGAGCTGAAGAAG ACTCTGGTGGAGCAGAGGACATAGAGAGGGAGCTGAAGAAG Direct Loss 0.959777219657985 0 0.44622222 0 prediction 0.91955443931597 Functional Loss - RBMX2 ENSG00000134597 CDS Human protein_coding chrX:129546565 chrX:129546565 nonsynonymous SNV 0.010 0 21 hm5C_associated_SNPs_48496 0 0 1 0 0 exosome 0.5002316437887 0 0 0.00046328757740044 hm5C_site_3816 DeepMRMD:0;iRNA_m5C:0.00046328757740044 3817 chr16 818657 818657 1 + C A rs143023160 818657 + 818637 818677 41 TCTCTCTGTAGAGGCCCTCTCGGGGACGCCCTGCCTCCTAG TCTCTCTGTAGAGGCCCTCTAGGGGACGCCCTGCCTCCTAG Direct Loss 0.959753865898411 0 0.95915246 0 prediction 0.919507731796823 Functional Loss - MSLN ENSG00000102854 CDS Human protein_coding chr16:818657 chr16:818657 stopgain 0.113 0 21 hm5C_associated_SNPs_48497 0 0 0 0 1 nucleus 0.500231643921092 0 0.91830492 0.000463287842184856 hm5C_site_3817 DeepMRMD:0.91830492;iRNA_m5C:0.000463287842184856 3818 chr1 2939155 2939155 1 + C T COAD 2939155 + 2939135 2939175 41 CTTTGGGGAGATTGTGCTGTCGGGGGGCACTACCCTGTTCC CTTTGGGGAGATTGTGCTGTTGGGGGGCACTACCCTGTTCC Direct Loss 0.959737618654686 0 0.9453381 0 prediction 0.919475237309372 Functional Loss - ACTRT2 ENSG00000169717 CDS Human protein_coding chr1:2939155 chr1:2939155 nonsynonymous SNV 0.229 4 21 hm5C_associated_SNPs_48498 0 0 0 0 0 unknown 0.500231643921092 0 0.8906762 0.00046328784218419 hm5C_site_3818 DeepMRMD:0.8906762;iRNA_m5C:0.00046328784218419 3819 chr14 21152553 21152553 1 + C G rs113950902 21152553 + 21152533 21152573 41 GGGTCCAGCTGAGGAAGGAGCGCGGATCCCAGGCTCGTTCT GGGTCCAGCTGAGGAAGGAGGGCGGATCCCAGGCTCGTTCT Direct Loss 0.959735053910361 0 0.8957015 0 prediction 0.919470107820722 Functional Loss - ANG;RNASE4 ENSG00000214274;ENSG00000258818 UTR5 Human other chr14:21152553 chr14:21152553 . . 0 21 hm5C_associated_SNPs_48499 1 0 0 0 0 unknown 0.500231643921091 0 0.791403 0.00046328784218197 hm5C_site_3819 DeepMRMD:0.791403;iRNA_m5C:0.00046328784218197 Amyotrophic Lateral Sclerosis, Dominant Amyotrophic Lateral Sclerosis, Dominant 3820 chr14 59951446 59951446 1 + C T rs80087397 59951446 + 59951426 59951466 41 GCCCCTTGACCCCGCCCGCCCTCGGGCCGGGCTCCGCACTC GCCCCTTGACCCCGCCCGCCTTCGGGCCGGGCTCCGCACTC Direct Loss 0.959719523210388 0 0.21408701 0 prediction 0.919439046420776 Functional Loss - JKAMP ENSG00000258782 ncRNA_intronic Human processed_transcript chr14:59951446 chr14:59951446 . . 0 21 hm5C_associated_SNPs_48500 0 0 1 0 0 Ribosome 0.500231643813669 0 0 0.000463287627338715 hm5C_site_3820 DeepMRMD:0;iRNA_m5C:0.000463287627338715 3821 chr9 125551979 125551979 1 + C A rs534083874 125551979 + 125551959 125551999 41 ACAGCCGTGGCCATGATGTACGGGACACTCATTTTCATGTA ACAGCCGTGGCCATGATGTAAGGGACACTCATTTTCATGTA Direct Loss 0.959719116377322 0 0.031383097 0 prediction 0.919438232754645 Functional Loss - OR5C1 ENSG00000148215 CDS Human protein_coding chr9:125551979 chr9:125551979 stopgain 0.652 0 21 hm5C_associated_SNPs_48501 0 0 0 0 0 unknown 0.500231643936525 0 0 0.000463287873050611 hm5C_site_3821 DeepMRMD:0;iRNA_m5C:0.000463287873050611 3822 chr11 2424541 2424541 1 + C G rs2234279 2424541 + 2424521 2424561 41 CGAGGGGTCGAAGCCAGACACGAGAGGAAGAGGGTCCTGGG CGAGGGGTCGAAGCCAGACAGGAGAGGAAGAGGGTCCTGGG Direct Loss 0.959701786472749 0 0.88772786 0 prediction 0.919403572945498 Functional Loss - TSSC4 ENSG00000184281 CDS Human protein_coding chr11:2424541 chr11:2424541 nonsynonymous SNV 0.011 0 21 hm5C_associated_SNPs_48502 0 0 1 0 0 Ribosome 0.500231641140591 0 0.77545572 0.000463282281181199 hm5C_site_3822 DeepMRMD:0.77545572;iRNA_m5C:0.000463282281181199 3823 chr17 78210832 78210832 1 + C A UCEC 78210832 + 78210812 78210852 41 GGAGACAGCTGAGGGGCTCCCTCCAGTCCGGATCCCGCCCT GGAGACAGCTGAGGGGCTCCATCCAGTCCGGATCCCGCCCT Direct Loss 0.959690295388649 0 0.96435654 0 prediction 0.919380590777299 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210832 chr17:78210832 nonsynonymous SNV 0.796 5 21 hm5C_associated_SNPs_48503 0 0 1 0 1 chromatin 0.500231643921109 0 0.92871308 0.000463287842217053 hm5C_site_3823 DeepMRMD:0.92871308;iRNA_m5C:0.000463287842217053 3824 chr4 109088791 109088791 1 + C T LUAD 109088791 + 109088771 109088811 41 AGCTAAATCGCCTTCCTCTTCGGGATGACTGATCTCGGCGA AGCTAAATCGCCTTCCTCTTTGGGATGACTGATCTCGGCGA Direct Loss 0.959687355652721 0 0.8834496 0 prediction 0.919374711305443 Functional Loss - LEF1 ENSG00000138795 CDS Human protein_coding chr4:109088791 chr4:109088791 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_48504 1 0 0 0 0 Cytosol 0.50023180186589 0 0.7668992 0.00046360373177956 hm5C_site_3824 DeepMRMD:0.7668992;iRNA_m5C:0.00046360373177956 Sebaceous tumors, somatic Sebaceous tumors, somatic 3825 chr9 125563200 125563200 1 + C T UCEC 125563200 + 125563180 125563220 41 ACTTCCAGGCCACATCCCGACGCGAGGCAGAGTGGGGCCGT ACTTCCAGGCCACATCCCGATGCGAGGCAGAGTGGGGCCGT Direct Loss 0.95968506309224 0 0.5849062 0 prediction 0.91937012618448 Functional Loss - OR1K1 ENSG00000165204 CDS Human protein_coding chr9:125563200 chr9:125563200 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48505 0 0 0 0 0 unknown 0.500231643921481 0 0.1698124 0.000463287842961124 hm5C_site_3825 DeepMRMD:0.1698124;iRNA_m5C:0.000463287842961124 3826 chrX 30268685 30268685 1 + C G BRCA 30268685 + 30268665 30268705 41 CGAGAGGAGACCCAGGGTCTCAAGGTTGCTCACGCCACTGC CGAGAGGAGACCCAGGGTCTGAAGGTTGCTCACGCCACTGC Direct Loss 0.959684648789978 0 0.9045869 0 prediction 0.919369297579956 Functional Loss - MAGEB1 ENSG00000214107 CDS Human protein_coding chrX:30268685 chrX:30268685 synonymous SNV . 0 21 hm5C_associated_SNPs_48506 0 0 0 0 0 nucleolus 0.50023149834907 0 0.8091738 0.000462996698140206 hm5C_site_3826 DeepMRMD:0.8091738;iRNA_m5C:0.000462996698140206 3827 chr3 46667789 46667789 1 + C T rs141881993 46667789 + 46667769 46667809 41 GGAATCCGGGAGTGGCCAACCGGGAGTTTCATACCTTAATT GGAATCCGGGAGTGGCCAACTGGGAGTTTCATACCTTAATT Direct Loss 0.959667402804708 0 0.89492536 0 prediction 0.919334805609417 Functional Loss - FAM240A ENSG00000256354 downstream Human other chr3:46667789 chr3:46667789 . . 0 21 hm5C_associated_SNPs_48507 0 0 0 0 0 unknown 0.500231643921092 0 0.78985072 0.000463287842184856 hm5C_site_3827 DeepMRMD:0.78985072;iRNA_m5C:0.000463287842184856 3828 chr4 85927698 85927698 1 + C T rs531384179 85927698 + 85927678 85927718 41 TGCCTGCAGGCCCAGCTACACGGGAGGCCAAGGCAGGAGGA TGCCTGCAGGCCCAGCTACATGGGAGGCCAAGGCAGGAGGA Direct Loss 0.959662653559131 0 0.89046156 0 prediction 0.919325307118262 Functional Loss - WDFY3-AS2 ENSG00000180769 ncRNA_exonic Human processed_transcript chr4:85927698 chr4:85927698 . . 0 21 hm5C_associated_SNPs_48508 0 0 0 0 0 unknown 0.50023164123449 0 0.78092312 0.000463282468979864 hm5C_site_3828 DeepMRMD:0.78092312;iRNA_m5C:0.000463282468979864 3829 chr1 57378088 57378088 1 + C T DLBC 57378088 + 57378068 57378108 41 GCCCACAGATGCAGCCTATCCACGAGGTGCTGCGGCACACA GCCCACAGATGCAGCCTATCTACGAGGTGCTGCGGCACACA Direct Loss 0.959662019312632 0 0.6218725 0 prediction 0.919324038625265 Functional Loss - C8A ENSG00000157131 CDS Human protein_coding chr1:57378088 chr1:57378088 nonsynonymous SNV 0.011 1 21 hm5C_associated_SNPs_48509 0 0 1 0 1 cytosol 0.500231644169194 0 0.243745 0.000463288338388379 hm5C_site_3829 DeepMRMD:0.243745;iRNA_m5C:0.000463288338388379 3830 chr17 8219200 8219200 1 + C T BLCA 8219200 + 8219180 8219220 41 ATGTGCGGAACCAGCAGTATCAGGAGGAGACCTACAGCCGC ATGTGCGGAACCAGCAGTATTAGGAGGAGACCTACAGCCGC Direct Loss 0.959655245031081 0 0.9312905 0 prediction 0.919310490062163 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8219200 chr17:8219200 stopgain 0.999 1 21 hm5C_associated_SNPs_48510 0 0 0 0 1 exosome 0.500231643921092 0 0.862581 0.000463287842184634 hm5C_site_3830 DeepMRMD:0.862581;iRNA_m5C:0.000463287842184634 3831 chr19 17392763 17392763 1 + C T rs112925678 17392763 + 17392743 17392783 41 CCCGCCTGGCTCGCAGGTTGCGGGATGCGCTGCGGGAGGAG CCCGCCTGGCTCGCAGGTTGTGGGATGCGCTGCGGGAGGAG Direct Loss 0.959653661430521 0 0.9265677 0 prediction 0.919307322861042 Functional Loss - ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392763 chr19:17392763 nonsynonymous SNV 0.003 2 21 hm5C_associated_SNPs_48511 0 0 0 0 1 chromatin 0.500231644027301 0 0.8531354 0.000463288054601163 hm5C_site_3831 DeepMRMD:0.8531354;iRNA_m5C:0.000463288054601163 3832 chr16 66436749 66436749 1 + C T SKCM 66436749 + 66436729 66436769 41 CCAAGCCCCCGCGGCCCGCGCTGGACGCCCGGCCTTCCCTC CCAAGCCCCCGCGGCCCGCGTTGGACGCCCGGCCTTCCCTC Direct Loss 0.959619587472619 0 0.89019656 0 prediction 0.919239174945238 Functional Loss - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66436749 chr16:66436749 synonymous SNV . 0 21 hm5C_associated_SNPs_48512 0 0 0 0 0 Cytosol 0.500231643922281 0 0.78039312 0.00046328784456251 hm5C_site_3832 DeepMRMD:0.78039312;iRNA_m5C:0.00046328784456251 3833 chr19 16631020 16631020 1 + C T CESC 16631020 + 16631000 16631040 41 CTGGGGAGTACGACTTGGACCGGGACCGCGACTGGGACCGG CTGGGGAGTACGACTTGGACTGGGACCGCGACTGGGACCGG Direct Loss 0.959613874708014 0 0.81205356 0 prediction 0.919227749416028 Functional Loss - CHERP ENSG00000085872 CDS Human protein_coding chr19:16631020 chr19:16631020 nonsynonymous SNV 0.558 1 21 hm5C_associated_SNPs_48513 0 0 0 0 0 Ribosome 0.500231643906044 0 0.62410712 0.000463287812088486 hm5C_site_3833 DeepMRMD:0.62410712;iRNA_m5C:0.000463287812088486 3834 chr1 234509333 234509333 1 + C G BLCA 234509333 + 234509313 234509353 41 GACCCTGCAGTGGCAGGACTCGGCACCGCGCCCTCCACCGC GACCCTGCAGTGGCAGGACTGGGCACCGCGCCCTCCACCGC Direct Loss 0.959602669592451 0 0.9069902 0 prediction 0.919205339184902 Functional Loss - COA6 ENSG00000168275 CDS Human protein_coding chr1:234509333 chr1:234509333 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_48514 0 0 1 0 1 Cytosol 0.500231643921078 0 0.8139804 0.000463287842155102 hm5C_site_3834 DeepMRMD:0.8139804;iRNA_m5C:0.000463287842155102 3835 chr19 35842894 35842894 1 + C T SKCM 35842894 + 35842874 35842914 41 GGTCTTTGGGTTGGAGGCTCCAGGAGGCTGGCTGGACCACA GGTCTTTGGGTTGGAGGCTCTAGGAGGCTGGCTGGACCACA Direct Loss 0.959602160886993 0 0.90358806 0 prediction 0.919204321773987 Functional Loss - FFAR1 ENSG00000126266 CDS Human protein_coding chr19:35842894 chr19:35842894 nonsynonymous SNV 0.848 0 21 hm5C_associated_SNPs_48515 0 0 0 0 0 exosome 0.500231643921092 0 0.80717612 0.000463287842184856 hm5C_site_3835 DeepMRMD:0.80717612;iRNA_m5C:0.000463287842184856 3836 chr5 112227458 112227458 1 + C T COAD 112227458 + 112227438 112227478 41 GAAACGTCGGCAGGAACTTGCTCGACTGAGAGACTCAGGAC GAAACGTCGGCAGGAACTTGTTCGACTGAGAGACTCAGGAC Direct Loss 0.959600341627748 0 0.48332313 0 prediction 0.919200683255496 Functional Loss - SRP19 ENSG00000212643 CDS Human protein_coding chr5:112227458 chr5:112227458 nonsynonymous SNV 0.986 2 21 hm5C_associated_SNPs_48516 0 0 0 0 0 Ribosome 0.500231644034444 0 0 0.000463288068888179 hm5C_site_3836 DeepMRMD:0;iRNA_m5C:0.000463288068888179 3837 chr19 49878129 49878129 1 + C T PAAD 49878129 + 49878109 49878149 41 GAGGGCGGCCACTGGCTCAGCGAGAAGCGACACCGCCTGCA GAGGGCGGCCACTGGCTCAGTGAGAAGCGACACCGCCTGCA Direct Loss 0.959596196661236 0 0.8749177 0 prediction 0.919192393322472 Functional Loss - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49878129 chr19:49878129 synonymous SNV . 0 21 hm5C_associated_SNPs_48517 0 0 0 0 0 exosome 0.500231648059461 0 0.7498354 0.000463296118922374 hm5C_site_3837 DeepMRMD:0.7498354;iRNA_m5C:0.000463296118922374 3838 chr14 96157186 96157186 1 + C T OV 96157186 + 96157166 96157206 41 GCCGTGTGGCAGCTCTACCCCGGGAGGAAGTACCGAGCAGC GCCGTGTGGCAGCTCTACCCTGGGAGGAAGTACCGAGCAGC Direct Loss 0.959578559455234 0 0.87439823 0 prediction 0.919157118910467 Functional Loss - TCL1B ENSG00000213231 CDS Human protein_coding chr14:96157186 chr14:96157186 synonymous SNV . 0 21 hm5C_associated_SNPs_48518 0 0 0 0 0 exosome 0.50023164391475 0 0.74879646 0.000463287829499226 hm5C_site_3838 DeepMRMD:0.74879646;iRNA_m5C:0.000463287829499226 3839 chr3 98188840 98188840 1 + C T HNSC 98188840 + 98188820 98188860 41 ATCATGATGTCCAAGAAACTCTGCATTCAGATGACCACAGG ATCATGATGTCCAAGAAACTTTGCATTCAGATGACCACAGG Direct Loss 0.959572645220136 0 0.35709262 0 prediction 0.919145290440272 Functional Loss - OR5K1 ENSG00000232382 CDS Human protein_coding chr3:98188840 chr3:98188840 synonymous SNV . 0 21 hm5C_associated_SNPs_48519 0 0 0 0 0 unknown 0.500231544290431 0 0 0.000463088580862747 hm5C_site_3839 DeepMRMD:0;iRNA_m5C:0.000463088580862747 3840 chr7 79082417 79082417 1 + C T COAD 79082417 + 79082397 79082437 41 CCTGATGGTGAGCCCCGCCACGGGGGTCTCGTTCACCTCCA CCTGATGGTGAGCCCCGCCATGGGGGTCTCGTTCACCTCCA Direct Loss 0.959557581082333 0 0.9438541 0 prediction 0.919115162164665 Functional Loss - MAGI2 ENSG00000187391 CDS Human protein_coding chr7:79082417 chr7:79082417 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48520 0 0 1 0 1 cytosol 0.500231643921092 0 0.8877082 0.000463287842184856 hm5C_site_3840 DeepMRMD:0.8877082;iRNA_m5C:0.000463287842184856 3841 chr11 64940257 64940257 1 + C A rs149911369 64940257 + 64940237 64940277 41 AGGTCCCTGTTCGCCTTCCCCGGGGCCCTGGCCTCTCGCCG AGGTCCCTGTTCGCCTTCCCAGGGGCCCTGGCCTCTCGCCG Direct Loss 0.959545482710299 0 0.93810976 0 prediction 0.919090965420598 Functional Loss - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64940257 chr11:64940257 synonymous SNV . 0 21 hm5C_associated_SNPs_48521 0 0 1 0 0 nucleolus 0.500231643921724 0 0.87621952 0.000463287843448956 hm5C_site_3841 DeepMRMD:0.87621952;iRNA_m5C:0.000463287843448956 3842 chr4 189065255 189065255 1 + C T GBM 189065255 + 189065235 189065275 41 GCTGAGTCTGTGCCGCATCACGGGAATGAAGGAGATGCTAA GCTGAGTCTGTGCCGCATCATGGGAATGAAGGAGATGCTAA Direct Loss 0.959543666872606 0 0.5273786 0 prediction 0.919087333745213 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189065255 chr4:189065255 nonsynonymous SNV 0.981 3 21 hm5C_associated_SNPs_48522 0 0 0 0 2 nucleus 0.50023164392112 0 0.0547572000000001 0.000463287842240367 hm5C_site_3842 DeepMRMD:0.0547572000000001;iRNA_m5C:0.000463287842240367 3843 chr5 140772654 140772654 1 + C T UCEC 140772654 + 140772634 140772674 41 TCACCGCGGGCAGGATAGATCGGGAGGAGCTCTGCGCTCAG TCACCGCGGGCAGGATAGATTGGGAGGAGCTCTGCGCTCAG Direct Loss 0.959524341912589 0 0.917784 0 prediction 0.919048683825179 Functional Loss - PCDHGA8 ENSG00000253767 CDS Human protein_coding chr5:140772654 chr5:140772654 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_48523 0 0 0 0 0 exosome 0.500231643920854 0 0.835568 0.00046328784170746 hm5C_site_3843 DeepMRMD:0.835568;iRNA_m5C:0.00046328784170746 3844 chr8 58174213 58174213 1 + C G rs149356502 58174213 + 58174193 58174233 41 CCTACAAGAAGAACATGTGTCGGGAACTGCGGGCTGTGGGC CCTACAAGAAGAACATGTGTGGGGAACTGCGGGCTGTGGGC Direct Loss 0.95952417039087 0 0.90412354 0 prediction 0.91904834078174 Functional Loss - LOC286177 ENSG00000253614 ncRNA_exonic Human lincRNA chr8:58174213 chr8:58174213 . . 0 21 hm5C_associated_SNPs_48524 0 0 0 0 0 unknown 0.500399558627984 0 0.80824708 0.000799117255967596 hm5C_site_3844 DeepMRMD:0.80824708;iRNA_m5C:0.000799117255967596 3845 chr16 1545435 1545435 1 + C T UCEC 1545435 + 1545415 1545455 41 TGCTGATGGAGGCGCAGTGTCGGCAGCAGACGCAGCCCGGC TGCTGATGGAGGCGCAGTGTTGGCAGCAGACGCAGCCCGGC Direct Loss 0.959518828334268 0 0.89558035 0 prediction 0.919037656668536 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545435 chr16:1545435 nonsynonymous SNV 0.021 1 21 hm5C_associated_SNPs_48525 0 0 0 0 1 Cytosol 0.50023094389277 0 0.7911607 0.000461887785539572 hm5C_site_3845 DeepMRMD:0.7911607;iRNA_m5C:0.000461887785539572 3846 chr5 173416274 173416274 1 + C T COAD 173416274 + 173416254 173416294 41 GACTGAGGCTGCGATGGCGGCGGCAGGCCGGGGTCGGGAGC GACTGAGGCTGCGATGGCGGTGGCAGGCCGGGGTCGGGAGC Direct Loss 0.959517949942052 0 0.818545 0 prediction 0.919035899884104 Functional Loss - C5orf47 ENSG00000185056 CDS Human protein_coding chr5:173416274 chr5:173416274 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48526 0 0 0 0 0 exosome 0.500231643921092 0 0.63709 0.000463287842184856 hm5C_site_3846 DeepMRMD:0.63709;iRNA_m5C:0.000463287842184856 3847 chr12 7045116 7045116 1 + C G BLCA 7045116 + 7045096 7045136 41 GGGCACTGGTGGAGTTTTGTCTGGACCCCCAATGGGTCCCA GGGCACTGGTGGAGTTTTGTGTGGACCCCCAATGGGTCCCA Direct Loss 0.959505882740403 0 0.41125622 0 prediction 0.919011765480807 Functional Loss - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7045116 chr12:7045116 nonsynonymous SNV 0.927 2 21 hm5C_associated_SNPs_48527 0 0 1 0 0 Endoplasmic reticulum 0.500231643985497 0 0 0.000463287970994264 hm5C_site_3847 DeepMRMD:0;iRNA_m5C:0.000463287970994264 3848 chr22 50615969 50615969 1 + C T CESC 50615969 + 50615949 50615989 41 GGTGCGGGGCCCGCGGTGCGCGTGAGCTGCAAGCTCCCGTC GGTGCGGGGCCCGCGGTGCGTGTGAGCTGCAAGCTCCCGTC Direct Loss 0.959500540695965 0 0.3905502 0 prediction 0.91900108139193 Functional Loss - PANX2 ENSG00000073150 CDS Human protein_coding chr22:50615969 chr22:50615969 synonymous SNV . 0 21 hm5C_associated_SNPs_48528 0 0 0 0 0 Endoplasmic reticulum 0.500231643848924 0 0 0.00046328769784898 hm5C_site_3848 DeepMRMD:0;iRNA_m5C:0.00046328769784898 3849 chr22 50962640 50962640 1 + G A GBM 50962640 - 50962620 50962660 41 CTGCTGATCACAGGCCTGTTCGGGGCTGGACTCGGTGGGGC CTGCTGATCACAGGCCTGTTTGGGGCTGGACTCGGTGGGGC Direct Loss 0.959497687106758 0 0.93562067 0 prediction 0.918995374213516 Functional Loss - SCO2 ENSG00000130489 CDS Human protein_coding chr22:50962640 chr22:50962640 synonymous SNV . 0 21 hm5C_associated_SNPs_48529 4 0 1 0 0 Ribosome 0.500231643921092 0 0.87124134 0.000463287842183968 hm5C_site_3849 DeepMRMD:0.87124134;iRNA_m5C:0.000463287842183968 not specified not specified 3850 chr1 207073657 207073657 1 + C A LUSC 207073657 + 207073637 207073677 41 AAGCAAGCTCAGGATAACATCACGAGTGCCCGGCTGCTGCA AAGCAAGCTCAGGATAACATAACGAGTGCCCGGCTGCTGCA Direct Loss 0.959491630370429 0 0.7545736 0 prediction 0.918983260740857 Functional Loss - IL24 ENSG00000162892 CDS Human protein_coding chr1:207073657 chr1:207073657 stopgain 0.428 0 21 hm5C_associated_SNPs_48530 0 0 0 0 2 Cytosol 0.50023188769169 0 0.5091472 0.000463775383380716 hm5C_site_3850 DeepMRMD:0.5091472;iRNA_m5C:0.000463775383380716 3851 chrX 152991181 152991181 1 + C A UCEC 152991181 + 152991161 152991201 41 TCAACAGTGCCATCCGTTACCTGGAGGGCCAACTGGCCCTG TCAACAGTGCCATCCGTTACATGGAGGGCCAACTGGCCCTG Direct Loss 0.959466507245116 0 0.6198528 0 prediction 0.918933014490231 Functional Loss - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:152991181 chrX:152991181 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_48531 0 0 0 0 0 nucleolus 0.500231640061361 0 0.2397056 0.000463280122722232 hm5C_site_3851 DeepMRMD:0.2397056;iRNA_m5C:0.000463280122722232 3852 chr3 194501824 194501824 1 + C T rs114777869 194501824 + 194501804 194501844 41 CTTCCCACATGGAGCACTCTCGGGATTAGCCATCACCGGAA CTTCCCACATGGAGCACTCTTGGGATTAGCCATCACCGGAA Direct Loss 0.959465891071318 0 0.9376196 0 prediction 0.918931782142635 Functional Loss - LINC01968 ENSG00000237222 ncRNA_exonic Human lincRNA chr3:194501824 chr3:194501824 . . 0 21 hm5C_associated_SNPs_48532 0 0 0 0 0 unknown 0.500231643921093 0 0.8752392 0.000463287842185078 hm5C_site_3852 DeepMRMD:0.8752392;iRNA_m5C:0.000463287842185078 3853 chr17 48944210 48944210 1 + C T rs556311785 48944210 + 48944190 48944230 41 CCCAGAAAGTGCCCTCTCCGCGGGGGTCTGCGGCCAAGGAG CCCAGAAAGTGCCCTCTCCGTGGGGGTCTGCGGCCAAGGAG Direct Loss 0.959463749218495 0 0.8940836 0 prediction 0.91892749843699 Functional Loss - TOB1-AS1 ENSG00000229980 ncRNA_exonic Human processed_transcript chr17:48944210 chr17:48944210 . . 0 21 hm5C_associated_SNPs_48533 0 0 1 0 0 unknown 0.500231485976053 0 0.7881672 0.000462971952106983 hm5C_site_3853 DeepMRMD:0.7881672;iRNA_m5C:0.000462971952106983 3854 chr2 233740979 233740979 1 + C G HNSC 233740979 + 233740959 233740999 41 TCGCTGGGGCCCGGCGCTATCGCGGCCATCGTGATCGCCGC TCGCTGGGGCCCGGCGCTATGGCGGCCATCGTGATCGCCGC Direct Loss 0.959462561281987 0 0.9344821 0 prediction 0.918925122563975 Functional Loss - C2orf82 ENSG00000182600 CDS Human protein_coding chr2:233740979 chr2:233740979 nonsynonymous SNV 0.958 3 21 hm5C_associated_SNPs_48534 0 0 1 0 0 cytosol 0.500231642892566 0 0.8689642 0.00046328578513144 hm5C_site_3854 DeepMRMD:0.8689642;iRNA_m5C:0.00046328578513144 3855 chr16 28909674 28909674 1 + C T ESCA 28909674 + 28909654 28909694 41 TCAAGGAGTGGGGCACTGGCCGGGACACCCTGCGCTGCTTG TCAAGGAGTGGGGCACTGGCTGGGACACCCTGCGCTGCTTG Direct Loss 0.9594539462473 0 0.9220687 0 prediction 0.9189078924946 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28909674 chr16:28909674 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_48535 0 0 1 0 1 chromatin 0.500231643910225 0 0.8441374 0.00046328782045002 hm5C_site_3855 DeepMRMD:0.8441374;iRNA_m5C:0.00046328782045002 3856 chr1 248023976 248023976 1 + C A LUSC 248023976 + 248023956 248023996 41 AGTTGGAGGACGCCTTGACTCAGGAGGCCAACGTGGGGAAA AGTTGGAGGACGCCTTGACTAAGGAGGCCAACGTGGGGAAA Direct Loss 0.959448095601011 0 0.9043453 0 prediction 0.918896191202022 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248023976 chr1:248023976 nonsynonymous SNV 0.180 0 21 hm5C_associated_SNPs_48536 0 0 0 0 2 Cytosol 0.50023164392109 0 0.8086906 0.000463287842180859 hm5C_site_3856 DeepMRMD:0.8086906;iRNA_m5C:0.000463287842180859 3857 chr10 64564934 64564934 1 + C G rs10995311 64564934 + 64564914 64564954 41 ATCGCGACGCGGCTTCTGGCCCGGAGGCGCCGATGCAGCCG ATCGCGACGCGGCTTCTGGCGCGGAGGCGCCGATGCAGCCG Direct Loss 0.959441839032229 0 0.86088735 0 prediction 0.918883678064458 Functional Loss - ADO ENSG00000181915 CDS Human protein_coding chr10:64564934 chr10:64564934 nonsynonymous SNV 0.800 0 21 hm5C_associated_SNPs_48537 0 1 1 0 0 exosome 0.500231673109775 0 0.7217747 0.000463346219550909 hm5C_site_3857 DeepMRMD:0.7217747;iRNA_m5C:0.000463346219550909 3858 chr4 48492546 48492546 1 + C A rs73144650 48492546 + 48492526 48492566 41 AGTACTTCGACAGCTACCAGCGGGAGCGGCTCATGGCTCTC AGTACTTCGACAGCTACCAGAGGGAGCGGCTCATGGCTCTC Direct Loss 0.959440326075411 0 0.8878113 0 prediction 0.918880652150821 Functional Loss - ZAR1 ENSG00000182223 CDS Human protein_coding chr4:48492546 chr4:48492546 synonymous SNV . 0 21 hm5C_associated_SNPs_48538 0 0 0 0 0 unknown 0.500231644031186 0 0.7756226 0.000463288062372058 hm5C_site_3858 DeepMRMD:0.7756226;iRNA_m5C:0.000463288062372058 3859 chr14 105398391 105398391 1 + C T BLCA 105398391 + 105398371 105398411 41 GCGCTGCGGGCGGCAGCCTTCGGCAAGGGCGTGCGCGTGCG GCGCTGCGGGCGGCAGCCTTTGGCAAGGGCGTGCGCGTGCG Direct Loss 0.959438244513566 0 0.85332894 0 prediction 0.918876489027131 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105398391 chr14:105398391 synonymous SNV . 0 21 hm5C_associated_SNPs_48539 0 0 0 0 1 exosome 0.500231644631821 0 0.70665788 0.000463289263641586 hm5C_site_3859 DeepMRMD:0.70665788;iRNA_m5C:0.000463289263641586 3860 chr6 28227361 28227361 1 + C T COAD 28227361 + 28227341 28227381 41 CCCCTTTAGTCGCTCTGGGTCGCGAGGGCGGCTCCCAAGAT CCCCTTTAGTCGCTCTGGGTTGCGAGGGCGGCTCCCAAGAT Direct Loss 0.959402170322328 0 0.79515696 0 prediction 0.918804340644657 Functional Loss - NKAPL ENSG00000189134 CDS Human protein_coding chr6:28227361 chr6:28227361 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_48540 0 0 0 0 0 exosome 0.500231643921092 0 0.59031392 0.000463287842184856 hm5C_site_3860 DeepMRMD:0.59031392;iRNA_m5C:0.000463287842184856 3861 chr9 990228 990228 1 + C G LUSC 990228 + 990208 990248 41 CAGAAAAACGGAGGCAACCCCGAGAGCCGCCCTGACAGCCC CAGAAAAACGGAGGCAACCCGGAGAGCCGCCCTGACAGCCC Direct Loss 0.959383789835908 0 0.8864765 0 prediction 0.918767579671816 Functional Loss - DMRT3 ENSG00000064218 CDS Human protein_coding chr9:990228 chr9:990228 synonymous SNV . 0 21 hm5C_associated_SNPs_48541 0 0 0 0 0 unknown 0.500231643921092 0 0.772953 0.000463287842184856 hm5C_site_3861 DeepMRMD:0.772953;iRNA_m5C:0.000463287842184856 3862 chr19 4652152 4652152 1 + C T CESC 4652152 + 4652132 4652172 41 TGGCGCTGCTGCGGCGCTTCCGCCACCGGGCGCGCTGCCTG TGGCGCTGCTGCGGCGCTTCTGCCACCGGGCGCGCTGCCTG Direct Loss 0.959373707066061 0 0.20917907 0 prediction 0.918747414132121 Functional Loss - TNFAIP8L1 ENSG00000185361 CDS Human protein_coding chr19:4652152 chr19:4652152 nonsynonymous SNV 0.011 4 21 hm5C_associated_SNPs_48542 0 0 0 0 0 Cytosol 0.500231587495573 0 0 0.00046317499114501 hm5C_site_3862 DeepMRMD:0;iRNA_m5C:0.00046317499114501 3863 chr19 11032986 11032986 1 + C T rs529371765 11032986 + 11032966 11033006 41 CCCTAGACTCAGAGGCGCCGCGGGGAGGGGTGGCCCCGCCG CCCTAGACTCAGAGGCGCCGTGGGGAGGGGTGGCCCCGCCG Direct Loss 0.959372936338973 0 0.90517664 0 prediction 0.918745872677946 Functional Loss - CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11032986 chr19:11032986 . . 0 21 hm5C_associated_SNPs_48543 0 0 1 0 0 Ribosome 0.500231643917616 0 0.81035328 0.000463287835231752 hm5C_site_3863 DeepMRMD:0.81035328;iRNA_m5C:0.000463287835231752 3864 chr2 113763616 113763616 1 + C T BLCA 113763616 + 113763596 113763636 41 ATCATCGGGTGTGGGTTCTTCAGGACCAGACGCTCATAGCA ATCATCGGGTGTGGGTTCTTTAGGACCAGACGCTCATAGCA Direct Loss 0.959349975092673 0 0.8326637 0 prediction 0.918699950185345 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763616 chr2:113763616 stopgain 0.032 0 21 hm5C_associated_SNPs_48544 0 0 0 0 2 exosome 0.500231682280922 0 0.6653274 0.00046336456184326 hm5C_site_3864 DeepMRMD:0.6653274;iRNA_m5C:0.00046336456184326 3865 chr16 29857200 29857200 1 + C A UCEC 29857200 + 29857180 29857220 41 CCAGGCATGAGGCTCAGAGACTGGAGCAGGAAGCCCGCGGC CCAGGCATGAGGCTCAGAGAATGGAGCAGGAAGCCCGCGGC Direct Loss 0.959349005403135 0 0.853075 0 prediction 0.918698010806269 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29857200 chr16:29857200 nonsynonymous SNV 0.973 4 21 hm5C_associated_SNPs_48545 0 0 0 0 1 Nucleus 0.500231631988666 0 0.70615 0.000463263977331874 hm5C_site_3865 DeepMRMD:0.70615;iRNA_m5C:0.000463263977331874 3866 chr17 4644276 4644276 1 + C T UCEC 4644276 + 4644256 4644296 41 AGGTGGAACCAGAGGAGGACCGGGAGCTAGCCCCTACCAGC AGGTGGAACCAGAGGAGGACTGGGAGCTAGCCCCTACCAGC Direct Loss 0.95934564136539 0 0.9054735 0 prediction 0.91869128273078 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4644276 chr17:4644276 nonsynonymous SNV 0.010 2 21 hm5C_associated_SNPs_48546 0 0 0 0 0 Cytosol 0.500231643920597 0 0.810947 0.000463287841193427 hm5C_site_3866 DeepMRMD:0.810947;iRNA_m5C:0.000463287841193427 3867 chr1 153233880 153233880 1 + C T ESCA 153233880 + 153233860 153233900 41 CTCCGGCGGCGGCGGCTTCTCGGGCCAGGCGGTCCAGTGCC CTCCGGCGGCGGCGGCTTCTTGGGCCAGGCGGTCCAGTGCC Direct Loss 0.95933825560449 0 0.9203857 0 prediction 0.918676511208979 Functional Loss - LOR ENSG00000203782 CDS Human protein_coding chr1:153233880 chr1:153233880 nonsynonymous SNV 0.015 1 21 hm5C_associated_SNPs_48547 0 0 0 0 0 exosome 0.500231643921091 0 0.8407714 0.000463287842182414 hm5C_site_3867 DeepMRMD:0.8407714;iRNA_m5C:0.000463287842182414 3868 chr9 34251665 34251665 1 + C T rs553917728 34251665 + 34251645 34251685 41 GGTCAGGTGTGGAGACTGCTCGCCAGTCTCTGTGAGCCTAG GGTCAGGTGTGGAGACTGCTTGCCAGTCTCTGTGAGCCTAG Direct Loss 0.959334424344641 0 0.33202413 0 prediction 0.918668848689283 Functional Loss - UBAP1 ENSG00000165006 UTR3 Human protein_coding chr9:34251665 chr9:34251665 . . 0 21 hm5C_associated_SNPs_48548 0 0 1 0 0 Ribosome 0.500231647170993 0 0 0.000463294341985332 hm5C_site_3868 DeepMRMD:0;iRNA_m5C:0.000463294341985332 3869 chr14 89029403 89029403 1 + C T rs536567004 89029403 + 89029383 89029423 41 AGGCGGTGGTGTCCCGGCTGCGGGGTAGGAGTCCGCGGCAG AGGCGGTGGTGTCCCGGCTGTGGGGTAGGAGTCCGCGGCAG Direct Loss 0.959313789820836 0 0.91914284 0 prediction 0.918627579641672 Functional Loss - ZC3H14 ENSG00000100722 UTR5 Human protein_coding chr14:89029403 chr14:89029403 . . 0 21 hm5C_associated_SNPs_48549 0 0 1 0 0 Nucleus 0.50023164441682 0 0.83828568 0.000463288833640219 hm5C_site_3869 DeepMRMD:0.83828568;iRNA_m5C:0.000463288833640219 3870 chr10 99330178 99330178 1 + C T rs557318746 99330178 + 99330158 99330198 41 TGGCAGCGGTGGTTCTTCTCCGGGAAGCTGCTCACAGACCG TGGCAGCGGTGGTTCTTCTCTGGGAAGCTGCTCACAGACCG Direct Loss 0.959294395240356 0 0.84283113 0 prediction 0.918588790480713 Functional Loss - UBTD1 ENSG00000165886 CDS Human protein_coding chr10:99330178 chr10:99330178 synonymous SNV . 0 21 hm5C_associated_SNPs_48550 0 0 1 0 0 Cytosol 0.50023164454025 0 0.68566226 0.000463289080500306 hm5C_site_3870 DeepMRMD:0.68566226;iRNA_m5C:0.000463289080500306 3871 chr12 81111064 81111064 1 + C T BLCA 81111064 + 81111044 81111084 41 CTCATGTGGGCCTGCAAAGCCTGCAAGAGGAAGTCCACCAC CTCATGTGGGCCTGCAAAGCTTGCAAGAGGAAGTCCACCAC Direct Loss 0.959278348097708 0 0.40688 0 prediction 0.918556696195415 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81111064 chr12:81111064 synonymous SNV . 0 21 hm5C_associated_SNPs_48551 0 0 0 0 0 unknown 0.500231635212613 0 0 0.000463270425225426 hm5C_site_3871 DeepMRMD:0;iRNA_m5C:0.000463270425225426 3872 chr20 56140815 56140815 1 + C T UCEC 56140815 + 56140795 56140835 41 GCCGACCTCCCCTGTGAAATCGAGAGAGAGATCCTTGCCTT GCCGACCTCCCCTGTGAAATTGAGAGAGAGATCCTTGCCTT Direct Loss 0.959274897876169 0 0.8902345 0 prediction 0.918549795752339 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56140815 chr20:56140815 synonymous SNV . 0 21 hm5C_associated_SNPs_48552 0 0 1 0 0 exosome 0.50023164424094 0 0.780469 0.000463288481880264 hm5C_site_3872 DeepMRMD:0.780469;iRNA_m5C:0.000463288481880264 3873 chr16 55361540 55361540 1 + C T rs146664655 55361540 + 55361520 55361560 41 GGCGCCGGTCGCCGAAAGAACGCGACCCGGGAGACCACCAG GGCGCCGGTCGCCGAAAGAATGCGACCCGGGAGACCACCAG Direct Loss 0.959255066048972 0 0.7361946 0 prediction 0.918510132097945 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361540 chr16:55361540 synonymous SNV . 0 21 hm5C_associated_SNPs_48553 0 0 0 0 1 exosome 0.50023164392109 0 0.4723892 0.000463287842179083 hm5C_site_3873 DeepMRMD:0.4723892;iRNA_m5C:0.000463287842179083 3874 chr13 21752500 21752500 1 + C T rs547920283 21752500 + 21752480 21752520 41 GCAGGAGAATCGCTTGCACCCAGGAGGTGGAGGCTGCAGTA GCAGGAGAATCGCTTGCACCTAGGAGGTGGAGGCTGCAGTA Direct Loss 0.959240937607498 0 0.9158088 0 prediction 0.918481875214996 Functional Loss - MRPL57 ENSG00000173141 UTR3 Human protein_coding chr13:21752500 chr13:21752500 . . 0 21 hm5C_associated_SNPs_48554 0 0 0 0 0 Ribosome 0.500231629811935 0 0.8316176 0.000463259623870504 hm5C_site_3874 DeepMRMD:0.8316176;iRNA_m5C:0.000463259623870504 3875 chr7 139102372 139102372 1 + C T UCEC 139102372 + 139102352 139102392 41 GATCCAAATCTCGGGAGAAACGCCATCGCCACAGGTCCCGC GATCCAAATCTCGGGAGAAATGCCATCGCCACAGGTCCCGC Direct Loss 0.959228638104912 0 0.29788548 0 prediction 0.918457276209824 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139102372 chr7:139102372 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_48555 0 0 1 0 1 unknown 0.500231643921092 0 0 0.000463287842184634 hm5C_site_3875 DeepMRMD:0;iRNA_m5C:0.000463287842184634 3876 chr2 139307793 139307793 1 + C T UCEC 139307793 + 139307773 139307813 41 ACAATAAAGTGGTGATGTCTCGGGAACCCACCCCACCTCTA ACAATAAAGTGGTGATGTCTTGGGAACCCACCCCACCTCTA Direct Loss 0.959213243262516 0 0.9524543 0 prediction 0.918426486525032 Functional Loss - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139307793 chr2:139307793 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_48556 0 0 1 0 2 chromatin 0.500231643921095 0 0.9049086 0.000463287842190407 hm5C_site_3876 DeepMRMD:0.9049086;iRNA_m5C:0.000463287842190407 3877 chr4 74702569 74702569 1 + C G LGG 74702569 + 74702549 74702589 41 CTGACGCCGCCGGGGCCCCTCGCCAGCGGTGAGAGCTCCTG CTGACGCCGCCGGGGCCCCTGGCCAGCGGTGAGAGCTCCTG Direct Loss 0.959211688398519 0 0.87288976 0 prediction 0.918423376797037 Functional Loss - CXCL6 ENSG00000124875 CDS Human protein_coding chr4:74702569 chr4:74702569 synonymous SNV . 0 21 hm5C_associated_SNPs_48557 0 0 0 0 1 exosome 0.500231643921093 0 0.74577952 0.000463287842185078 hm5C_site_3877 DeepMRMD:0.74577952;iRNA_m5C:0.000463287842185078 3878 chr12 57859426 57859426 1 + C T SKCM 57859426 + 57859406 57859446 41 ACATGCTGGTTGGCAAGTGCCGGGAGGAACCCTTGGAAGGT ACATGCTGGTTGGCAAGTGCTGGGAGGAACCCTTGGAAGGT Direct Loss 0.959210599247557 0 0.940043 0 prediction 0.918421198495114 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57859426 chr12:57859426 nonsynonymous SNV 0.940 1 21 hm5C_associated_SNPs_48558 0 0 0 0 2 nucleoplasm 0.500231643912925 0 0.880086 0.000463287825849479 hm5C_site_3878 DeepMRMD:0.880086;iRNA_m5C:0.000463287825849479 3879 chr2 5833285 5833285 1 + C T COAD 5833285 + 5833265 5833305 41 CCAGAGAAGAGCGCGGCCGGCGGCGGCGGCGGGAGCGCGGG CCAGAGAAGAGCGCGGCCGGTGGCGGCGGCGGGAGCGCGGG Direct Loss 0.959199678401674 0 0.9075929 0 prediction 0.918399356803348 Functional Loss - SOX11 ENSG00000176887 CDS Human protein_coding chr2:5833285 chr2:5833285 synonymous SNV . 0 21 hm5C_associated_SNPs_48559 0 0 0 0 0 exosome 0.500231643921084 0 0.8151858 0.000463287842168869 hm5C_site_3879 DeepMRMD:0.8151858;iRNA_m5C:0.000463287842168869 3880 chr20 57876598 57876598 1 + C T SKCM 57876598 + 57876578 57876618 41 GAGACTGTGGCTGGCCCTGGCGAGGGGACTGTGGCCCCGAC GAGACTGTGGCTGGCCCTGGTGAGGGGACTGTGGCCCCGAC Direct Loss 0.95919099047738 0 0.9330028 0 prediction 0.91838198095476 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57876598 chr20:57876598 synonymous SNV . 0 21 hm5C_associated_SNPs_48560 0 0 0 0 0 exosome 0.500231644494963 0 0.8660056 0.000463288989925426 hm5C_site_3880 DeepMRMD:0.8660056;iRNA_m5C:0.000463288989925426 3881 chr11 113860273 113860273 1 + C T CESC 113860273 + 113860253 113860293 41 GTAGCCCTCCCCCACCACCTCGGGAGGCCTCGCTGGCGGTG GTAGCCCTCCCCCACCACCTTGGGAGGCCTCGCTGGCGGTG Direct Loss 0.959167552353601 0 0.9460927 0 prediction 0.918335104707201 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113860273 chr11:113860273 nonsynonymous SNV 0.007 2 21 hm5C_associated_SNPs_48561 0 0 0 0 1 Cytosol 0.500231643921092 0 0.8921854 0.000463287842184856 hm5C_site_3881 DeepMRMD:0.8921854;iRNA_m5C:0.000463287842184856 3882 chr1 54432012 54432012 1 + C A THYM 54432012 + 54431992 54432032 41 GACTGCGGAAGCTGTGAAGCCACGGGAGACCTCGGAGCCTA GACTGCGGAAGCTGTGAAGCAACGGGAGACCTCGGAGCCTA Direct Loss 0.959166216790094 0 0.85189617 0 prediction 0.918332433580187 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54432012 chr1:54432012 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_48562 0 0 1 0 2 Ribosome 0.500231643921085 0 0.70379234 0.000463287842170201 hm5C_site_3882 DeepMRMD:0.70379234;iRNA_m5C:0.000463287842170201 3883 chr14 77844554 77844554 1 + C A LUSC 77844554 + 77844534 77844574 41 AGCAGGCTAGACTGGAATTTCTGGAGAAGGAACCAAGAAAG AGCAGGCTAGACTGGAATTTATGGAGAAGGAACCAAGAAAG Direct Loss 0.95916515101425 0 0.30500817 0 prediction 0.918330302028499 Functional Loss - SAMD15 ENSG00000100583 CDS Human protein_coding chr14:77844554 chr14:77844554 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48563 0 0 1 0 0 exosome 0.500231594737252 0 0 0.000463189474504411 hm5C_site_3883 DeepMRMD:0;iRNA_m5C:0.000463189474504411 3884 chr19 56206250 56206250 1 + C A UCEC 56206250 + 56206230 56206270 41 GGAAGACGCCGGAGTCATTCCTGGGGCCCAATGCAGCCCTC GGAAGACGCCGGAGTCATTCATGGGGCCCAATGCAGCCCTC Direct Loss 0.95914683548942 0 0.91301835 0 prediction 0.918293670978841 Functional Loss - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56206250 chr19:56206250 nonsynonymous SNV 0.954 3 21 hm5C_associated_SNPs_48564 0 0 1 0 1 chromatin 0.500231643872147 0 0.8260367 0.000463287744294716 hm5C_site_3884 DeepMRMD:0.8260367;iRNA_m5C:0.000463287744294716 3885 chr12 108589970 108589970 1 + C T LUSC 108589970 + 108589950 108589990 41 CCCTCAAGGGGAGGGTTGTCCGGGAGAAGGAGGAAGAGCGA CCCTCAAGGGGAGGGTTGTCTGGGAGAAGGAGGAAGAGCGA Direct Loss 0.959140113830741 0 0.90838826 0 prediction 0.918280227661482 Functional Loss - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108589970 chr12:108589970 nonsynonymous SNV 0.993 2 21 hm5C_associated_SNPs_48565 0 0 0 0 1 Endoplasmic reticulum 0.500231643932543 0 0.81677652 0.000463287865085205 hm5C_site_3885 DeepMRMD:0.81677652;iRNA_m5C:0.000463287865085205 3886 chr16 1291206 1291206 1 + C G ESCA 1291206 + 1291186 1291226 41 GTCGGGGGTCAGGAGGCCCCCAGGAGCAAGTGGCCCTGGCA GTCGGGGGTCAGGAGGCCCCGAGGAGCAAGTGGCCCTGGCA Direct Loss 0.959137194952957 0 0.9153361 0 prediction 0.918274389905914 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291206 chr16:1291206 synonymous SNV . 0 21 hm5C_associated_SNPs_48566 0 0 0 0 0 exosome 0.500231643921092 0 0.8306722 0.000463287842184634 hm5C_site_3886 DeepMRMD:0.8306722;iRNA_m5C:0.000463287842184634 3887 chr16 84230520 84230520 1 + G A SKCM 84230520 - 84230500 84230540 41 GCCCCCAGGCCCTGCTGGTCCAGGAGGAGAGACAGCTGCCT GCCCCCAGGCCCTGCTGGTCTAGGAGGAGAGACAGCTGCCT Direct Loss 0.959113763346037 0 0.7907722 0 prediction 0.918227526692075 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84230520 chr16:84230520 synonymous SNV . 0 21 hm5C_associated_SNPs_48567 0 0 0 0 1 exosome 0.500231643921092 0 0.5815444 0.000463287842184856 hm5C_site_3887 DeepMRMD:0.5815444;iRNA_m5C:0.000463287842184856 3888 chr7 42977137 42977137 1 + C T rs142529352 42977137 + 42977117 42977157 41 AGGGCAAGAGGATCATTGAACGAGACAGAAAGCGACCATCC AGGGCAAGAGGATCATTGAATGAGACAGAAAGCGACCATCC Direct Loss 0.95909989154824 0 0.5006675 0 prediction 0.91819978309648 Functional Loss - MRPL32 ENSG00000106591 CDS Human protein_coding chr7:42977137 chr7:42977137 stopgain 0.972 0 21 hm5C_associated_SNPs_48568 0 0 1 0 0 Ribosome 0.500231816618779 0 0.00133500000000009 0.00046363323755827 hm5C_site_3888 DeepMRMD:0.00133500000000009;iRNA_m5C:0.00046363323755827 3889 chr14 101347428 101347428 1 + C T SKCM 101347428 + 101347408 101347448 41 GGTCGTCTTGCAGGGCTTCTCGCAAGACGACATCCTCATCA GGTCGTCTTGCAGGGCTTCTTGCAAGACGACATCCTCATCA Direct Loss 0.959099444503601 0 0.46206188 0 prediction 0.918198889007201 Functional Loss - RTL1 ENSG00000254656 CDS Human protein_coding chr14:101347428 chr14:101347428 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48569 0 0 0 0 0 exosome 0.50023158698886 0 0 0.000463173977720999 hm5C_site_3889 DeepMRMD:0;iRNA_m5C:0.000463173977720999 3890 chr5 154396849 154396849 1 + C T SKCM 154396849 + 154396829 154396869 41 ATTCCGAAGGCTCCTTCAAACTGGAGGATCCTACCGAGGTG ATTCCGAAGGCTCCTTCAAATTGGAGGATCCTACCGAGGTG Direct Loss 0.959098296170502 0 0.8075471 0 prediction 0.918196592341004 Functional Loss - KIF4B ENSG00000226650 CDS Human protein_coding chr5:154396849 chr5:154396849 synonymous SNV . 0 21 hm5C_associated_SNPs_48570 0 0 0 0 0 exosome 0.500231643921092 0 0.6150942 0.000463287842184856 hm5C_site_3890 DeepMRMD:0.6150942;iRNA_m5C:0.000463287842184856 3891 chrX 44703471 44703471 1 + C T BLCA 44703471 + 44703451 44703491 41 ATAACCAGAAGCTTGTTTCTCAGCAATGGTGTGGCCGCCAA ATAACCAGAAGCTTGTTTCTTAGCAATGGTGTGGCCGCCAA Direct Loss 0.959095834881255 0 0.1416212 0 prediction 0.918191669762509 Functional Loss - DUSP21 ENSG00000189037 CDS Human protein_coding chrX:44703471 chrX:44703471 synonymous SNV . 0 21 hm5C_associated_SNPs_48571 0 0 0 0 0 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3891 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3892 chr16 1291269 1291269 1 + C T LIHC 1291269 + 1291249 1291289 41 CCATACTGGATGCACTTCTGCGGGGGCTCCCTCATCCACCC CCATACTGGATGCACTTCTGTGGGGGCTCCCTCATCCACCC Direct Loss 0.95909106460306 0 0.92833626 0 prediction 0.91818212920612 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291269 chr16:1291269 synonymous SNV . 0 21 hm5C_associated_SNPs_48572 0 0 0 0 1 exosome 0.50023158125662 0 0.85667252 0.000463162513240523 hm5C_site_3892 DeepMRMD:0.85667252;iRNA_m5C:0.000463162513240523 3893 chr3 183778056 183778056 1 + C T UCEC 183778056 + 183778036 183778076 41 CTGTGGGTGCAGTTCAGCCACGCGATGGACACCCTGCTCTT CTGTGGGTGCAGTTCAGCCATGCGATGGACACCCTGCTCTT Direct Loss 0.959069507785166 0 0.58287364 0 prediction 0.918139015570333 Functional Loss - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183778056 chr3:183778056 synonymous SNV . 0 21 hm5C_associated_SNPs_48573 0 0 0 0 0 exosome 0.500567047381732 0 0.16574728 0.00113409476346416 hm5C_site_3893 DeepMRMD:0.16574728;iRNA_m5C:0.00113409476346416 3894 chr1 28150497 28150497 1 + C T rs75197843 28150497 + 28150477 28150517 41 AACACTTTGGAAGGCTGAGGCGGGAGGATCAGTATATCGGT AACACTTTGGAAGGCTGAGGTGGGAGGATCAGTATATCGGT Direct Loss 0.959065876560393 0 0.9323021 0 prediction 0.918131753120786 Functional Loss - STX12 ENSG00000117758 UTR3 Human protein_coding chr1:28150497 chr1:28150497 . . 0 21 hm5C_associated_SNPs_48574 0 0 0 0 0 Ribosome 0.500231643921094 0 0.8646042 0.000463287842187965 hm5C_site_3894 DeepMRMD:0.8646042;iRNA_m5C:0.000463287842187965 3895 chr4 169099069 169099069 1 + C T BLCA 169099069 + 169099049 169099089 41 GGAAGCCTGTCAGCAGAAGACGGGGGAGCACAAAACCATGC GGAAGCCTGTCAGCAGAAGATGGGGGAGCACAAAACCATGC Direct Loss 0.959059538543509 0 0.8642544 0 prediction 0.918119077087017 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169099069 chr4:169099069 nonsynonymous SNV 0.984 4 21 hm5C_associated_SNPs_48575 0 0 0 0 2 exosome 0.500231643845327 0 0.7285088 0.00046328769065429 hm5C_site_3895 DeepMRMD:0.7285088;iRNA_m5C:0.00046328769065429 3896 chr2 11300785 11300785 1 + C T STAD 11300785 + 11300765 11300805 41 CTCTGTATCTTTCATTTTAACGGGAACGTGAAGCAGGCCAC CTCTGTATCTTTCATTTTAATGGGAACGTGAAGCAGGCCAC Direct Loss 0.959054934236366 0 0.8678481 0 prediction 0.918109868472732 Functional Loss - PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300785 chr2:11300785 synonymous SNV . 0 21 hm5C_associated_SNPs_48576 0 0 1 0 2 Ribosome 0.500231643921092 0 0.7356962 0.000463287842184856 hm5C_site_3896 DeepMRMD:0.7356962;iRNA_m5C:0.000463287842184856 3897 chr2 39893487 39893487 1 + C T STAD 39893487 + 39893467 39893507 41 GCTACTTCCTGGGCATCGACCGGGACATCGACACCCTCATC GCTACTTCCTGGGCATCGACTGGGACATCGACACCCTCATC Direct Loss 0.959038397064036 0 0.9037959 0 prediction 0.918076794128072 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39893487 chr2:39893487 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48577 0 0 0 0 1 exosome 0.500231650219846 0 0.8075918 0.000463300439692116 hm5C_site_3897 DeepMRMD:0.8075918;iRNA_m5C:0.000463300439692116 3898 chr19 19655479 19655479 1 + C T LUSC 19655479 + 19655459 19655499 41 CCTCGGGCCCCCGGGTGCGCCGGGAGGAGCGCGTCTTCCTG CCTCGGGCCCCCGGGTGCGCTGGGAGGAGCGCGTCTTCCTG Direct Loss 0.959038221160815 0 0.9255654 0 prediction 0.91807644232163 Functional Loss - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19655479 chr19:19655479 nonsynonymous SNV 0.407 4 21 hm5C_associated_SNPs_48578 0 0 0 0 0 exosome 0.500231643921092 0 0.8511308 0.000463287842184856 hm5C_site_3898 DeepMRMD:0.8511308;iRNA_m5C:0.000463287842184856 3899 chr22 17083013 17083013 1 + C T ACC 17083013 + 17082993 17083033 41 GCCACCACCCCCCGAGGAGCCTGGAGCCCCGGCCCCGAGCC GCCACCACCCCCCGAGGAGCTTGGAGCCCCGGCCCCGAGCC Direct Loss 0.959030790412687 0 0.8409485 0 prediction 0.918061580825374 Functional Loss - TPTEP1 ENSG00000100181 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17083013 chr22:17083013 . . 0 21 hm5C_associated_SNPs_48579 0 0 0 0 1 unknown 0.500231643921766 0 0.681897 0.000463287843531335 hm5C_site_3899 DeepMRMD:0.681897;iRNA_m5C:0.000463287843531335 3900 chr10 42972764 42972764 1 + C G rs149054476 42972764 + 42972744 42972784 41 AGGCAGTGACGCAGCAACAGCGCGAGGCGACTTTGGAGCGG AGGCAGTGACGCAGCAACAGGGCGAGGCGACTTTGGAGCGG Direct Loss 0.959028545053475 0 0.48944637 0 prediction 0.918057090106949 Functional Loss - LINC00839 ENSG00000185904 ncRNA_exonic Human lincRNA chr10:42972764 chr10:42972764 . . 0 21 hm5C_associated_SNPs_48580 0 0 0 2 1 unknown 0.500231651203258 0 0 0.000463302406515043 hm5C_site_3900 DeepMRMD:0;iRNA_m5C:0.000463302406515043 3901 chr14 60976318 60976318 1 + C A LUAD 60976318 + 60976298 60976338 41 CCTTTCACGGTGGCAACTACCGCGAGCTCTATCATATCCTG CCTTTCACGGTGGCAACTACAGCGAGCTCTATCATATCCTG Direct Loss 0.959023375468642 0 0.47673735 0 prediction 0.918046750937284 Functional Loss - SIX6 ENSG00000184302 CDS Human protein_coding chr14:60976318 chr14:60976318 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48581 0 0 0 0 0 unknown 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3901 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3902 chr10 5248279 5248279 1 + C T SKCM 5248279 + 5248259 5248299 41 GCAGGATTGGCCAAGTCCATCGGGGTGTCAAACTTCAACTG GCAGGATTGGCCAAGTCCATTGGGGTGTCAAACTTCAACTG Direct Loss 0.959012104902761 0 0.9135605 0 prediction 0.918024209805521 Functional Loss - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5248279 chr10:5248279 synonymous SNV . 0 21 hm5C_associated_SNPs_48582 0 0 0 0 2 exosome 0.500231643921163 0 0.827121 0.000463287842326299 hm5C_site_3902 DeepMRMD:0.827121;iRNA_m5C:0.000463287842326299 3903 chr15 24921296 24921296 1 + C T SKCM 24921296 + 24921276 24921316 41 GTGGGTTGGGGGCTGGCCATCAGGAAGACACCCATGCTGCC GTGGGTTGGGGGCTGGCCATTAGGAAGACACCCATGCTGCC Direct Loss 0.959011681462988 0 0.9237128 0 prediction 0.918023362925976 Functional Loss - NPAP1 ENSG00000185823 CDS Human protein_coding chr15:24921296 chr15:24921296 synonymous SNV . 0 21 hm5C_associated_SNPs_48583 0 0 0 0 0 Nucleus 0.500231643921092 0 0.8474256 0.000463287842184856 hm5C_site_3903 DeepMRMD:0.8474256;iRNA_m5C:0.000463287842184856 3904 chr4 3443769 3443769 1 + C A rs150750289 3443769 + 3443749 3443789 41 CCCCAGCCCCTGGCCCCCACCGGGGCTGGGCCCCTTCCTCC CCCCAGCCCCTGGCCCCCACAGGGGCTGGGCCCCTTCCTCC Direct Loss 0.959006003602768 0 0.9390899 0 prediction 0.918012007205536 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3443769 chr4:3443769 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48584 0 0 0 0 1 cytosol 0.500231643921093 0 0.8781798 0.000463287842185967 hm5C_site_3904 DeepMRMD:0.8781798;iRNA_m5C:0.000463287842185967 3905 chr16 2009583 2009583 1 + C A rs191861939 2009583 + 2009563 2009603 41 ACCCGGACGGAGGTAGAGGCCAGGGCAGCGCGTCCGGGAGC ACCCGGACGGAGGTAGAGGCAAGGGCAGCGCGTCCGGGAGC Direct Loss 0.959001806189275 0 0.8855019 0 prediction 0.91800361237855 Functional Loss - NDUFB10 ENSG00000140990 UTR5 Human protein_coding chr16:2009583 chr16:2009583 . . 0 21 hm5C_associated_SNPs_48585 0 0 1 0 0 Ribosome 0.500231643921953 0 0.7710038 0.000463287843905036 hm5C_site_3905 DeepMRMD:0.7710038;iRNA_m5C:0.000463287843905036 3906 chr6 42893099 42893099 1 + C T LUAD 42893099 + 42893079 42893119 41 TGCAGCTGCCTGTGCGACCCCGCGGGCCCGCTGCCTTCCCC TGCAGCTGCCTGTGCGACCCTGCGGGCCCGCTGCCTTCCCC Direct Loss 0.958993626726572 0 0.8622186 0 prediction 0.917987253453144 Functional Loss - PTCRA ENSG00000171611 CDS Human protein_coding chr6:42893099 chr6:42893099 synonymous SNV . 0 21 hm5C_associated_SNPs_48586 0 0 0 0 0 exosome 0.500232262780546 0 0.7244372 0.000464525561091556 hm5C_site_3906 DeepMRMD:0.7244372;iRNA_m5C:0.000464525561091556 3907 chr1 32052520 32052520 1 + C T UCEC 32052520 + 32052500 32052540 41 GGCGTCAATGAGTGCGACATCGAGAGCTTCGTGCTGGGCGT GGCGTCAATGAGTGCGACATTGAGAGCTTCGTGCTGGGCGT Direct Loss 0.958968367799903 0 0.8343508 0 prediction 0.917936735599806 Functional Loss - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32052520 chr1:32052520 synonymous SNV . 0 21 hm5C_associated_SNPs_48587 0 0 1 0 1 Ribosome 0.500231643921094 0 0.6687016 0.000463287842188409 hm5C_site_3907 DeepMRMD:0.6687016;iRNA_m5C:0.000463287842188409 3908 chr8 27516105 27516105 1 + C T SKCM 27516105 + 27516085 27516125 41 AGGAGGAGCTGGAGGGAATTCAGAAGCTGCTTCTGGCCCAG AGGAGGAGCTGGAGGGAATTTAGAAGCTGCTTCTGGCCCAG Direct Loss 0.958964265465601 0 0.863467 0 prediction 0.917928530931202 Functional Loss - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27516105 chr8:27516105 stopgain 0.999 1 21 hm5C_associated_SNPs_48588 0 0 0 0 1 Cytosol 0.500231643921088 0 0.726934 0.000463287842176641 hm5C_site_3908 DeepMRMD:0.726934;iRNA_m5C:0.000463287842176641 3909 chr19 56466869 56466869 1 + C T COAD 56466869 + 56466849 56466889 41 GGAAGCCAAGCTGGATCAGACGGGAGTCACCGCCTTCCTTG GGAAGCCAAGCTGGATCAGATGGGAGTCACCGCCTTCCTTG Direct Loss 0.958953420647405 0 0.8785285 0 prediction 0.91790684129481 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56466869 chr19:56466869 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48589 0 0 0 0 0 unknown 0.500231643921092 0 0.757057 0.000463287842184856 hm5C_site_3909 DeepMRMD:0.757057;iRNA_m5C:0.000463287842184856 3910 chr3 44686087 44686087 1 + C T rs9865162 44686087 + 44686067 44686107 41 GTTGCAGTGAGCCAGGATCGCGCCATTGCACTCCAGCCTGG GTTGCAGTGAGCCAGGATCGTGCCATTGCACTCCAGCCTGG Direct Loss 0.958938132743805 0 0.71717995 0 prediction 0.91787626548761 Functional Loss - ZNF197;ZNF660-ZNF197 ENSG00000236869 ncRNA_intronic Human antisense chr3:44686087 chr3:44686087 . . 0 21 hm5C_associated_SNPs_48590 0 0 1 0 0 unknown 0.50023164240255 0 0.4343599 0.000463284805099384 hm5C_site_3910 DeepMRMD:0.4343599;iRNA_m5C:0.000463284805099384 3911 chrX 8433833 8433833 1 + C T BRCA 8433833 + 8433813 8433853 41 GCAGTTCGTAGAGGGAGACGCGGGAAGAAAGGGGCTGCGAC GCAGTTCGTAGAGGGAGACGTGGGAAGAAAGGGGCTGCGAC Direct Loss 0.958914982156366 0 0.9115659 0 prediction 0.917829964312733 Functional Loss - VCX3B ENSG00000205642 CDS Human protein_coding chrX:8433833 chrX:8433833 synonymous SNV . 0 21 hm5C_associated_SNPs_48591 0 0 0 0 1 exosome 0.500231643921092 0 0.8231318 0.000463287842184856 hm5C_site_3911 DeepMRMD:0.8231318;iRNA_m5C:0.000463287842184856 3912 chr22 29837589 29837589 1 + C A LUAD 29837589 + 29837569 29837609 41 CTCCTCATTTCTGACGACCTCAGGAGCGTCCGAAGTGGGTG CTCCTCATTTCTGACGACCTAAGGAGCGTCCGAAGTGGGTG Direct Loss 0.958909323339697 0 0.76409125 0 prediction 0.917818646679394 Functional Loss - RFPL1 ENSG00000128250 CDS Human protein_coding chr22:29837589 chr22:29837589 synonymous SNV . 0 21 hm5C_associated_SNPs_48592 0 0 0 0 1 exosome 0.500231643921197 0 0.5281825 0.000463287842394688 hm5C_site_3912 DeepMRMD:0.5281825;iRNA_m5C:0.000463287842394688 3913 chr16 2201750 2201750 1 + C T STAD 2201750 + 2201730 2201770 41 GTGTTACCCATGCCTACTACCGGGATGCTCATGGTGAGCCC GTGTTACCCATGCCTACTACTGGGATGCTCATGGTGAGCCC Direct Loss 0.958897923431974 0 0.8949059 0 prediction 0.917795846863947 Functional Loss - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2201750 chr16:2201750 nonsynonymous SNV 0.806 5 21 hm5C_associated_SNPs_48593 0 0 0 0 2 chromatin 0.500231646044504 0 0.7898118 0.00046329208900886 hm5C_site_3913 DeepMRMD:0.7898118;iRNA_m5C:0.00046329208900886 3914 chr1 179051362 179051362 1 + C T rs368872192 179051362 + 179051342 179051382 41 TCCAGGCCGTGGGAGGGAACCGACGAGCCGGGCTCGGCCTG TCCAGGCCGTGGGAGGGAACTGACGAGCCGGGCTCGGCCTG Direct Loss 0.958897139652876 0 0.89684427 0 prediction 0.917794279305752 Functional Loss - TOR3A ENSG00000186283 CDS Human protein_coding chr1:179051362 chr1:179051362 synonymous SNV . 0 21 hm5C_associated_SNPs_48594 0 0 1 0 0 Ribosome 0.500231635661945 0 0.79368854 0.00046327132388968 hm5C_site_3914 DeepMRMD:0.79368854;iRNA_m5C:0.00046327132388968 3915 chr20 30584986 30584986 1 + C T BLCA 30584986 + 30584966 30585006 41 TGAGCGGGATGGGGCCTCGGCGGGAGAGCGTGCAGGGACCC TGAGCGGGATGGGGCCTCGGTGGGAGAGCGTGCAGGGACCC Direct Loss 0.958872730434961 0 0.88297606 0 prediction 0.917745460869922 Functional Loss - XKR7 ENSG00000260903 CDS Human protein_coding chr20:30584986 chr20:30584986 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_48595 0 0 0 0 0 exosome 0.500231643903423 0 0.76595212 0.000463287806845347 hm5C_site_3915 DeepMRMD:0.76595212;iRNA_m5C:0.000463287806845347 3916 chr12 94853870 94853870 1 + C T rs182615130 94853870 + 94853850 94853890 41 GCCACGGGTGACAGCGGCAGCGGCGGGGCCGGGCTGCGCTC GCCACGGGTGACAGCGGCAGTGGCGGGGCCGGGCTGCGCTC Direct Loss 0.958869594198298 0 0.8966949 0 prediction 0.917739188396597 Functional Loss - CEP83-AS1 ENSG00000173588 upstream Human protein_coding chr12:94853870 chr12:94853870 . . 0 21 hm5C_associated_SNPs_48596 0 0 0 0 0 unknown 0.500231643921093 0 0.7933898 0.000463287842186189 hm5C_site_3916 DeepMRMD:0.7933898;iRNA_m5C:0.000463287842186189 3917 chr22 21799889 21799889 1 + C T rs139749703 21799889 + 21799869 21799909 41 GGCTGCAGCAGCAGCACCAACGGGAGCAGCGGGGGCTGCGA GGCTGCAGCAGCAGCACCAATGGGAGCAGCGGGGGCTGCGA Direct Loss 0.958862997279096 0 0.9147774 0 prediction 0.917725994558193 Functional Loss - HIC2 ENSG00000169635 CDS Human protein_coding chr22:21799889 chr22:21799889 synonymous SNV . 0 21 hm5C_associated_SNPs_48597 0 0 1 0 0 chromatin 0.500231643921106 0 0.8295548 0.000463287842211724 hm5C_site_3917 DeepMRMD:0.8295548;iRNA_m5C:0.000463287842211724 3918 chr1 150477121 150477121 1 + C A UCEC 150477121 + 150477101 150477141 41 TTTCAAGGCAGGCGGGTGCCCTGGAGCGTCCAGTCCTCATT TTTCAAGGCAGGCGGGTGCCATGGAGCGTCCAGTCCTCATT Direct Loss 0.958856695221653 0 0.84497607 0 prediction 0.917713390443306 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477121 chr1:150477121 nonsynonymous SNV 0.186 0 21 hm5C_associated_SNPs_48598 0 0 1 0 2 Ribosome 0.500231643921088 0 0.68995214 0.000463287842176863 hm5C_site_3918 DeepMRMD:0.68995214;iRNA_m5C:0.000463287842176863 3919 chr11 66366699 66366699 1 + C G CESC 66366699 + 66366679 66366719 41 ACGGGGCGGCAGGCGGTACTCAAGGGCATGGGCAGCGGCCA ACGGGGCGGCAGGCGGTACTGAAGGGCATGGGCAGCGGCCA Direct Loss 0.958851535600897 0 0.90298325 0 prediction 0.917703071201794 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66366699 chr11:66366699 synonymous SNV . 0 21 hm5C_associated_SNPs_48599 0 0 1 0 1 Ribosome 0.500231643921093 0 0.8059665 0.0004632878421853 hm5C_site_3919 DeepMRMD:0.8059665;iRNA_m5C:0.0004632878421853 3920 chr17 61895420 61895420 1 + C T BRCA 61895420 + 61895400 61895440 41 GTCACGGAGAGACTGGCAATCGGCATAGCGATAGTCCACGT GTCACGGAGAGACTGGCAATTGGCATAGCGATAGTCCACGT Direct Loss 0.958832872809391 0 0.74773794 0 prediction 0.917665745618782 Functional Loss - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61895420 chr17:61895420 nonsynonymous SNV 0.993 3 21 hm5C_associated_SNPs_48600 0 0 1 0 0 chromatin 0.500231643657231 0 0.49547588 0.000463287314462324 hm5C_site_3920 DeepMRMD:0.49547588;iRNA_m5C:0.000463287314462324 3921 chr1 119923811 119923811 1 + C T UCEC 119923811 + 119923791 119923831 41 GAGCAGATGACAGCATCACGCGGGATGACAACATTGCAGCA GAGCAGATGACAGCATCACGTGGGATGACAACATTGCAGCA Direct Loss 0.958832675597534 0 0.92955506 0 prediction 0.917665351195068 Functional Loss - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119923811 chr1:119923811 nonsynonymous SNV 0.004 2 21 hm5C_associated_SNPs_48601 0 0 0 0 1 cytosol 0.500231667172355 0 0.85911012 0.000463334344710908 hm5C_site_3921 DeepMRMD:0.85911012;iRNA_m5C:0.000463334344710908 3922 chr17 41570223 41570223 1 + C T OV 41570223 + 41570203 41570243 41 TCTAGATATCGGTCCAGGAGCAGGAGTCAGAGTCCCCCCAA TCTAGATATCGGTCCAGGAGTAGGAGTCAGAGTCCCCCCAA Direct Loss 0.958815514497118 0 0.88666654 0 prediction 0.917631028994237 Functional Loss - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570223 chr17:41570223 synonymous SNV . 0 21 hm5C_associated_SNPs_48602 0 0 1 0 0 Cytosol 0.500231643921092 0 0.77333308 0.000463287842184856 hm5C_site_3922 DeepMRMD:0.77333308;iRNA_m5C:0.000463287842184856 3923 chr21 37518645 37518645 1 + G T LUAD 37518645 - 37518625 37518665 41 GGTCCTGGGCAGCACGCATTCACCAGAATCCTGTCAGCTTT GGTCCTGGGCAGCACGCATTAACCAGAATCCTGTCAGCTTT Direct Loss 0.958806116064593 0 0.17834887 0 prediction 0.917612232129186 Functional Loss - CBR3 ENSG00000159231 CDS Human protein_coding chr21:37518645 chr21:37518645 synonymous SNV . 0 21 hm5C_associated_SNPs_48603 0 0 0 0 2 exosome 0.500231643921112 0 0 0.000463287842223936 hm5C_site_3923 DeepMRMD:0;iRNA_m5C:0.000463287842223936 3924 chr1 220267580 220267580 1 + C T BLCA 220267580 + 220267560 220267600 41 TGCGTTGGGGGCTGCGCCCTCGCGGGCCGGGCGCGGCCGCC TGCGTTGGGGGCTGCGCCCTTGCGGGCCGGGCGCGGCCGCC Direct Loss 0.958798585772726 0 0.8941289 0 prediction 0.917597171545452 Functional Loss - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220267580 chr1:220267580 nonsynonymous SNV 0.285 0 21 hm5C_associated_SNPs_48604 0 0 1 0 0 Ribosome 0.500231643921093 0 0.7882578 0.0004632878421853 hm5C_site_3924 DeepMRMD:0.7882578;iRNA_m5C:0.0004632878421853 3925 chr12 47629084 47629084 1 + C T SKCM 47629084 + 47629064 47629104 41 GCCTTAACTACCGTGAGGTCCGCGAGTTCCGCTCCGACCAC GCCTTAACTACCGTGAGGTCTGCGAGTTCCGCTCCGACCAC Direct Loss 0.958794962342987 0 0.51588 0 prediction 0.917589924685974 Functional Loss - PCED1B ENSG00000179715 CDS Human protein_coding chr12:47629084 chr12:47629084 nonsynonymous SNV 0.770 4 21 hm5C_associated_SNPs_48605 0 0 0 0 0 Nucleus 0.500231644548896 0 0.03176 0.000463289097792252 hm5C_site_3925 DeepMRMD:0.03176;iRNA_m5C:0.000463289097792252 3926 chr22 35815961 35815961 1 + C T COAD 35815961 + 35815941 35815981 41 CGGAGCGGGGCCCGTCAGCACGAGAGGGACAGTGACCGCCG CGGAGCGGGGCCCGTCAGCATGAGAGGGACAGTGACCGCCG Direct Loss 0.958785210803823 0 0.8971424 0 prediction 0.917570421607647 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35815961 chr22:35815961 synonymous SNV . 0 21 hm5C_associated_SNPs_48606 0 0 1 0 2 Cytosol 0.500231223190262 0 0.7942848 0.000462446380524506 hm5C_site_3926 DeepMRMD:0.7942848;iRNA_m5C:0.000462446380524506 3927 chr6 3224994 3224994 1 + G A COAD 3224994 - 3224974 3225014 41 GAGGAGGAGGAGGGCGAGGACGAGGCGTAGATGCCCCCGCG GAGGAGGAGGAGGGCGAGGATGAGGCGTAGATGCCCCCGCG Direct Loss 0.958773641859828 0 0.9044007 0 prediction 0.917547283719656 Functional Loss - TUBB2B ENSG00000137285 CDS Human protein_coding chr6:3224994 chr6:3224994 synonymous SNV . 0 21 hm5C_associated_SNPs_48607 0 0 1 0 0 exosome 0.500231643921092 0 0.8088014 0.000463287842184856 hm5C_site_3927 DeepMRMD:0.8088014;iRNA_m5C:0.000463287842184856 3928 chr1 22987644 22987644 1 + C G LUSC 22987644 + 22987624 22987664 41 CTTCACCTACCACGCCAGCTCTCGAGGGAACCTGTGCGTGA CTTCACCTACCACGCCAGCTGTCGAGGGAACCTGTGCGTGA Direct Loss 0.958773423483197 0 0.25034326 0 prediction 0.917546846966395 Functional Loss - C1QB ENSG00000173369 CDS Human protein_coding chr1:22987644 chr1:22987644 nonsynonymous SNV 0.943 4 21 hm5C_associated_SNPs_48608 0 0 0 0 0 exosome 0.500231644517302 0 0 0.000463289034603243 hm5C_site_3928 DeepMRMD:0;iRNA_m5C:0.000463289034603243 3929 chr2 15732011 15732011 1 + C A rs199677503 15732011 + 15731991 15732031 41 CACTGCCACGCCGTGTCAGTCGGGAGGGAGGGAGCGAGCAG CACTGCCACGCCGTGTCAGTAGGGAGGGAGGGAGCGAGCAG Direct Loss 0.958771515623336 0 0.92572856 0 prediction 0.917543031246673 Functional Loss - DDX1 ENSG00000079785 UTR5 Human protein_coding chr2:15732011 chr2:15732011 . . 0 21 hm5C_associated_SNPs_48609 0 0 1 0 1 Cytosol 0.500231644026113 0 0.85145712 0.000463288052225952 hm5C_site_3929 DeepMRMD:0.85145712;iRNA_m5C:0.000463288052225952 3930 chr4 9213918 9213918 1 + C A rs187608883 9213918 + 9213898 9213938 41 GCTTCCCTACGAGGGAGGACCAGGAGATCCAAAGGGAAGAA GCTTCCCTACGAGGGAGGACAAGGAGATCCAAAGGGAAGAA Direct Loss 0.958760218897938 0 0.9034058 0 prediction 0.917520437795875 Functional Loss - USP17L10 ENSG00000231396 CDS Human protein_coding chr4:9213918 chr4:9213918 synonymous SNV . 0 21 hm5C_associated_SNPs_48610 0 0 0 0 0 unknown 0.500231643698442 0 0.8068116 0.000463287396883727 hm5C_site_3930 DeepMRMD:0.8068116;iRNA_m5C:0.000463287396883727 3931 chr7 106508577 106508577 1 + C A LUSC 106508577 + 106508557 106508597 41 GCATGGCGGAGGTGGCCAGCCGCGACCCCAAGCTCTACGCC GCATGGCGGAGGTGGCCAGCAGCGACCCCAAGCTCTACGCC Direct Loss 0.958759502922523 0 0.43665993 0 prediction 0.917519005845046 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508577 chr7:106508577 nonsynonymous SNV 0.096 2 21 hm5C_associated_SNPs_48611 0 0 1 0 0 Cytosol 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3931 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3932 chr13 76123641 76123641 1 + C G rs7995889 76123641 + 76123621 76123661 41 ATGCGTAGAACGCGAGCGCTCGGCAAGGCTCGGCTCGGAAG ATGCGTAGAACGCGAGCGCTGGGCAAGGCTCGGCTCGGAAG Direct Loss 0.95874567465399 0 0.3357816 0 prediction 0.917491349307979 Functional Loss - UCHL3 ENSG00000118939;ENSG00000261553 upstream Human other chr13:76123641 chr13:76123641 . . 0 21 hm5C_associated_SNPs_48612 0 0 0 0 0 Ribosome 0.500231657463039 0 0 0.000463314926078651 hm5C_site_3932 DeepMRMD:0;iRNA_m5C:0.000463314926078651 3933 chr7 138487709 138487709 1 + C T SKCM 138487709 + 138487689 138487729 41 GTGGACGAGTACGGCTGGATCGCGGCAGCTGTTGGCTGGAG GTGGACGAGTACGGCTGGATTGCGGCAGCTGTTGGCTGGAG Direct Loss 0.95872604397891 0 0.88205576 0 prediction 0.91745208795782 Functional Loss - TMEM213 ENSG00000214128 CDS Human protein_coding chr7:138487709 chr7:138487709 synonymous SNV . 0 21 hm5C_associated_SNPs_48613 0 0 0 0 1 nucleus 0.500231643921092 0 0.76411152 0.000463287842184856 hm5C_site_3933 DeepMRMD:0.76411152;iRNA_m5C:0.000463287842184856 3934 chrX 46943850 46943850 1 + C T STAD 46943850 + 46943830 46943870 41 CTCCGTGGCTCTTCGCCAGTCGGGAGGCTATGTTGCCACCA CTCCGTGGCTCTTCGCCAGTTGGGAGGCTATGTTGCCACCA Direct Loss 0.958712168762014 0 0.9181793 0 prediction 0.917424337524028 Functional Loss - RGN ENSG00000130988 CDS Human protein_coding chrX:46943850 chrX:46943850 nonsynonymous SNV 0.323 0 21 hm5C_associated_SNPs_48614 0 0 0 0 1 Cytosol 0.500231519951376 0 0.8363586 0.00046303990275165 hm5C_site_3934 DeepMRMD:0.8363586;iRNA_m5C:0.00046303990275165 3935 chr13 114193755 114193755 1 + C T UCEC 114193755 + 114193735 114193775 41 TCTCAGGGCCCCGTGGTCACCGAGGAGATCGCCACCTCCAT TCTCAGGGCCCCGTGGTCACTGAGGAGATCGCCACCTCCAT Direct Loss 0.958705781586358 0 0.9222038 0 prediction 0.917411563172717 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114193755 chr13:114193755 synonymous SNV . 0 21 hm5C_associated_SNPs_48615 0 0 1 0 2 Ribosome 0.50023163603768 0 0.8444076 0.000463272075360788 hm5C_site_3935 DeepMRMD:0.8444076;iRNA_m5C:0.000463272075360788 3936 chr19 5828164 5828164 1 + C T MESO 5828164 + 5828144 5828184 41 CGGTGCACGAGCTGTCGGCGCGCGAGTGCGCCTGCGTGTGA CGGTGCACGAGCTGTCGGCGTGCGAGTGCGCCTGCGTGTGA Direct Loss 0.958702382939968 0 0.663176 0 prediction 0.917404765879937 Functional Loss - NRTN ENSG00000171119 CDS Human protein_coding chr19:5828164 chr19:5828164 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_48616 0 0 1 0 0 Ribosome 0.500231642546708 0 0.326352 0.000463285093416976 hm5C_site_3936 DeepMRMD:0.326352;iRNA_m5C:0.000463285093416976 3937 chr3 46940284 46940284 1 + C A rs201016660 46940284 + 46940264 46940304 41 GATGAGGCTGAGCGCCTCACCGAGGAGGAGCTGCGCGCCAT GATGAGGCTGAGCGCCTCACAGAGGAGGAGCTGCGCGCCAT Direct Loss 0.958685035305505 0 0.90773857 0 prediction 0.91737007061101 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46940284 chr3:46940284 synonymous SNV . 0 21 hm5C_associated_SNPs_48617 0 0 0 0 1 exosome 0.500231645152357 0 0.81547714 0.00046329030471326 hm5C_site_3937 DeepMRMD:0.81547714;iRNA_m5C:0.00046329030471326 3938 chr22 24325115 24325115 1 + C G rs548564711 24325115 + 24325095 24325135 41 AAGGAGAAGGTGGAACGCAACAGGACTGCCATGGACCAGGC AAGGAGAAGGTGGAACGCAAGAGGACTGCCATGGACCAGGC Direct Loss 0.958670189469686 0 0.7993092 0 prediction 0.917340378939373 Functional Loss - GSTT2;GSTT2B ENSG00000099984 CDS Human polymorphic_pseudogene chr22:24325115 chr22:24325115 nonsynonymous SNV 0.307 2 21 hm5C_associated_SNPs_48618 0 0 0 0 2 unknown 0.500231643921095 0 0.5986184 0.000463287842189297 hm5C_site_3938 DeepMRMD:0.5986184;iRNA_m5C:0.000463287842189297 3939 chr8 36768464 36768464 1 + C T SKCM 36768464 + 36768444 36768484 41 TTAGGGATGTGCACTTTATTCTGGAGACCTCCATGCGGCCA TTAGGGATGTGCACTTTATTTTGGAGACCTCCATGCGGCCA Direct Loss 0.958661712732702 0 0.39269143 0 prediction 0.917323425465403 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36768464 chr8:36768464 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48619 0 0 0 0 1 unknown 0.500231643921092 0 0 0.000463287842184856 hm5C_site_3939 DeepMRMD:0;iRNA_m5C:0.000463287842184856 3940 chr20 61273845 61273845 1 + C A rs530768092 61273845 + 61273825 61273865 41 ATGAAGCGGCGCGTGGCTGCCGGGGAGGCCAGAGCGTGGAG ATGAAGCGGCGCGTGGCTGCAGGGGAGGCCAGAGCGTGGAG Direct Loss 0.958657300848247 0 0.9172805 0 prediction 0.917314601696493 Functional Loss - SLCO4A1 ENSG00000101187 UTR5 Human protein_coding chr20:61273845 chr20:61273845 . . 0 21 hm5C_associated_SNPs_48620 0 0 1 0 1 Endoplasmic reticulum 0.500231643786911 0 0.834561 0.000463287573821969 hm5C_site_3940 DeepMRMD:0.834561;iRNA_m5C:0.000463287573821969 3941 chr16 843165 843165 1 + C T COAD 843165 + 843145 843185 41 TCCTGTACAGCCGGGGCCAGCGGGAGCTGAGCGTGCGGGAC TCCTGTACAGCCGGGGCCAGTGGGAGCTGAGCGTGCGGGAC Direct Loss 0.958656041904082 0 0.9199438 0 prediction 0.917312083808163 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:843165 chr16:843165 nonsynonymous SNV 0.198 1 21 hm5C_associated_SNPs_48621 0 0 1 0 1 Nucleus 0.500231643921092 0 0.8398876 0.000463287842184856 hm5C_site_3941 DeepMRMD:0.8398876;iRNA_m5C:0.000463287842184856 Multiple continuous traits in DGI samples 3942 chr3 186917604 186917604 1 + C T GBM 186917604 + 186917584 186917624 41 ACCGCATCCACGTGGCCAGCCGCCAGGACAACCGGCGGCAC ACCGCATCCACGTGGCCAGCTGCCAGGACAACCGGCGGCAC Direct Loss 0.958636033476744 0 0.43173447 0 prediction 0.917272066953489 Functional Loss - RTP1 ENSG00000175077 CDS Human protein_coding chr3:186917604 chr3:186917604 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_48622 0 0 0 0 0 exosome 0.500231635702868 0 0 0.000463271405736654 hm5C_site_3942 DeepMRMD:0;iRNA_m5C:0.000463271405736654 3943 chr22 32754215 32754215 1 + C T LUAD 32754215 + 32754195 32754235 41 ATCTGGAAAAACCAATGTCCCTGGAGTGTGGATGCACCGTC ATCTGGAAAAACCAATGTCCTTGGAGTGTGGATGCACCGTC Direct Loss 0.958629069694417 0 0.18999198 0 prediction 0.917258139388834 Functional Loss - RFPL3 ENSG00000128276 CDS Human protein_coding chr22:32754215 chr22:32754215 synonymous SNV . 0 21 hm5C_associated_SNPs_48623 0 0 0 0 1 exosome 0.500223469017137 0 0 0.000446938034273092 hm5C_site_3943 DeepMRMD:0;iRNA_m5C:0.000446938034273092 3944 chr17 9549174 9549174 1 + C G rs552978792 9549174 + 9549154 9549194 41 CCAGCGGCCCCCGGGAGCCCCGGGGAGGAACGCCCGCCCGG CCAGCGGCCCCCGGGAGCCCGGGGGAGGAACGCCCGCCCGG Direct Loss 0.958625290537923 0 0.94174135 0 prediction 0.917250581075845 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9549174 chr17:9549174 synonymous SNV . 0 21 hm5C_associated_SNPs_48624 0 0 0 0 0 cytosol 0.500231643885567 0 0.8834827 0.00046328777113458 hm5C_site_3944 DeepMRMD:0.8834827;iRNA_m5C:0.00046328777113458 3945 chr13 27998816 27998816 1 + C T rs185665072 27998816 + 27998796 27998836 41 GGGCCGGGCGCGCCGGTTCCCGGCACGTGTCTCGGCACGTG GGGCCGGGCGCGCCGGTTCCTGGCACGTGTCTCGGCACGTG Direct Loss 0.958625244276156 0 0.8803742 0 prediction 0.917250488552312 Functional Loss - GTF3A ENSG00000122034 UTR5 Human protein_coding chr13:27998816 chr13:27998816 . 0.000 0 21 hm5C_associated_SNPs_48625 0 0 1 0 0 Cytosol 0.500231643958951 0 0.7607484 0.000463287917902067 hm5C_site_3945 DeepMRMD:0.7607484;iRNA_m5C:0.000463287917902067 3946 chr5 159437650 159437650 1 + C A HNSC 159437650 + 159437630 159437670 41 CAGTTCCTGATCCCAAAAATCAGCATTCCCAGAGTAAGCTG CAGTTCCTGATCCCAAAAATAAGCATTCCCAGAGTAAGCTG Direct Loss 0.958613747406579 0 0.15364322 0 prediction 0.917227494813159 Functional Loss - TTC1 ENSG00000113312 CDS Human protein_coding chr5:159437650 chr5:159437650 nonsynonymous SNV 0.094 0 21 hm5C_associated_SNPs_48626 0 0 1 0 0 Ribosome 0.500231644227737 0 0 0.000463288455473609 hm5C_site_3946 DeepMRMD:0;iRNA_m5C:0.000463288455473609 3947 chr14 65016722 65016722 1 + C T DLBC 65016722 + 65016702 65016742 41 TCCAGGGCGAGGCCATGTACCGGGTGCCCGAGTTTTATGCG TCCAGGGCGAGGCCATGTACTGGGTGCCCGAGTTTTATGCG Direct Loss 0.958611318317365 0 0.8973683 0 prediction 0.917222636634729 Functional Loss - PPP1R36 ENSG00000165807 CDS Human protein_coding chr14:65016722 chr14:65016722 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48627 0 0 0 0 1 exosome 0.500231618345524 0 0.7947366 0.000463236691048863 hm5C_site_3947 DeepMRMD:0.7947366;iRNA_m5C:0.000463236691048863 3948 chr20 826309 826309 1 + C T UCEC 826309 + 826289 826329 41 TGTATGGGCTAAGGCAGGCTCGGGAGAGCCCAGCAGCTGAA TGTATGGGCTAAGGCAGGCTTGGGAGAGCCCAGCAGCTGAA Direct Loss 0.958608341196692 0 0.92949545 0 prediction 0.917216682393384 Functional Loss - FAM110A ENSG00000125898 CDS Human protein_coding chr20:826309 chr20:826309 nonsynonymous SNV 0.119 4 21 hm5C_associated_SNPs_48628 0 0 0 0 0 Cytosol 0.500231643921093 0 0.8589909 0.000463287842185744 hm5C_site_3948 DeepMRMD:0.8589909;iRNA_m5C:0.000463287842185744 3949 chr10 96039597 96039597 1 + G A rs2274224 96039597 - 96039577 96039617 41 CTTCCTCATTATTGGCAGGTCGGGGGTTGGCATTCCCACCA CTTCCTCATTATTGGCAGGTTGGGGGTTGGCATTCCCACCA Direct Loss 0.958604385636722 0 0.9098773 0 prediction 0.917208771273443 Functional Loss - PLCE1 ENSG00000138193 CDS Human protein_coding chr10:96039597 chr10:96039597 nonsynonymous SNV 0.741 0 21 hm5C_associated_SNPs_48629 0 1 0 0 0 nucleoplasm 0.500231643922456 0 0.8197546 0.000463287844912008 hm5C_site_3949 DeepMRMD:0.8197546;iRNA_m5C:0.000463287844912008 3950 chr1 109241848 109241848 1 + C T GBM 109241848 + 109241828 109241868 41 CAAGAAGTAGAAGTCATCATCGGGAGGGCCATGGGTCTTCT CAAGAAGTAGAAGTCATCATTGGGAGGGCCATGGGTCTTCT Direct Loss 0.958593039745361 0 0.9308535 0 prediction 0.917186079490722 Functional Loss - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109241848 chr1:109241848 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_48630 0 0 1 0 1 Nucleus 0.50023164140132 0 0.861707 0.000463282802640741 hm5C_site_3950 DeepMRMD:0.861707;iRNA_m5C:0.000463282802640741 3951 chr6 155577967 155577967 1 + G A rs113400640 155577967 - 155577947 155577987 41 GGGCCAGGCTGCTGCTCAGCCTCGGGGTGAACGTCTGGGTC GGGCCAGGCTGCTGCTCAGCTTCGGGGTGAACGTCTGGGTC Direct Loss 0.958585849094485 0 0.22802266 0 prediction 0.91717169818897 Functional Loss - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155577967 chr6:155577967 synonymous SNV . 0 21 hm5C_associated_SNPs_48631 0 0 0 0 0 Cytosol 0.500231643916786 0 0 0.000463287833571302 hm5C_site_3951 DeepMRMD:0;iRNA_m5C:0.000463287833571302 3952 chr4 41984425 41984425 1 + C T BLCA 41984425 + 41984405 41984445 41 GCTTTAGTGCAGGCTTGTCTCAGCAGGTCCTGTTGACCAGC GCTTTAGTGCAGGCTTGTCTTAGCAGGTCCTGTTGACCAGC Direct Loss 0.958578637596005 0 0.84998393 0 prediction 0.917157275192009 Functional Loss - DCAF4L1 ENSG00000182308 CDS Human protein_coding chr4:41984425 chr4:41984425 stopgain 0.420 1 21 hm5C_associated_SNPs_48632 0 0 0 0 0 Nucleus 0.500231642413851 0 0.69996786 0.000463284827702859 hm5C_site_3952 DeepMRMD:0.69996786;iRNA_m5C:0.000463284827702859 3953 chr16 30594036 30594036 1 + G T TGCT 30594036 - 30594016 30594056 41 GCTTCAAGCGCAAGACCGCCCTGGAAGCCCATCGGTGGATC GCTTCAAGCGCAAGACCGCCATGGAAGCCCATCGGTGGATC Direct Loss 0.958571181216424 0 0.3840354 0 prediction 0.917142362432848 Functional Loss - ZNF785 ENSG00000197162 CDS Human protein_coding chr16:30594036 chr16:30594036 nonsynonymous SNV 0.009 2 21 hm5C_associated_SNPs_48633 0 0 1 0 0 Nucleus 0.500231646291634 0 0 0.000463292583268604 hm5C_site_3953 DeepMRMD:0;iRNA_m5C:0.000463292583268604 3954 chr19 10398421 10398421 1 + C A MESO 10398421 + 10398401 10398441 41 ACGAGTTTGCTGCTGGACCCCGCGACTTCTGGCAGCCCGTG ACGAGTTTGCTGCTGGACCCAGCGACTTCTGGCAGCCCGTG Direct Loss 0.958567927417889 0 0.16484383 0 prediction 0.917135854835778 Functional Loss - ICAM4 ENSG00000105371 CDS Human protein_coding chr19:10398421 chr19:10398421 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48634 0 0 1 0 1 Endoplasmic reticulum 0.500231644477135 0 0 0.000463288954269725 hm5C_site_3954 DeepMRMD:0;iRNA_m5C:0.000463288954269725 3955 chrX 130217917 130217917 1 + C T COAD 130217917 + 130217897 130217937 41 GGAATGAGCCCACCTTGCCCCGGGAGTTCACTCGCCGTGGG GGAATGAGCCCACCTTGCCCTGGGAGTTCACTCGCCGTGGG Direct Loss 0.958560201639084 0 0.91207844 0 prediction 0.917120403278167 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130217917 chrX:130217917 nonsynonymous SNV 0.590 2 21 hm5C_associated_SNPs_48635 0 0 0 0 1 unknown 0.500231643921093 0 0.82415688 0.000463287842185078 hm5C_site_3955 DeepMRMD:0.82415688;iRNA_m5C:0.000463287842185078 3956 chr17 6909884 6909884 1 + C T UCEC 6909884 + 6909864 6909904 41 CTGAGCTGCAGGCCTGGTGTCGGGAGATCACGGAGGTGGGG CTGAGCTGCAGGCCTGGTGTTGGGAGATCACGGAGGTGGGG Direct Loss 0.9585489770314 0 0.94082737 0 prediction 0.917097954062799 Functional Loss - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6909884 chr17:6909884 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_48636 0 0 0 0 2 Cytosol 0.500231614980152 0 0.88165474 0.000463229960304457 hm5C_site_3956 DeepMRMD:0.88165474;iRNA_m5C:0.000463229960304457 3957 chr12 67663389 67663389 1 + C G rs527636310 67663389 + 67663369 67663409 41 TCGCGCTGCGACCCTGGAAGCGGGAGCCGCCGCGAGCGAGA TCGCGCTGCGACCCTGGAAGGGGGAGCCGCCGCGAGCGAGA Direct Loss 0.958545668768215 0 0.9263208 0 prediction 0.91709133753643 Functional Loss - CAND1 ENSG00000111530 UTR5 Human protein_coding chr12:67663389 chr12:67663389 . . 0 21 hm5C_associated_SNPs_48637 0 0 1 0 0 Nucleus 0.500231663059167 0 0.8526416 0.000463326118333995 hm5C_site_3957 DeepMRMD:0.8526416;iRNA_m5C:0.000463326118333995 3958 chr1 248366520 248366520 1 + C G LUAD 248366520 + 248366500 248366540 41 TCATGGTTCTCCTCATCTACCTGGACACCCAGCTCCACACC TCATGGTTCTCCTCATCTACGTGGACACCCAGCTCCACACC Direct Loss 0.958534352846002 0 0.11714557 0 prediction 0.917068705692004 Functional Loss - OR2M3 ENSG00000228198 CDS Human protein_coding chr1:248366520 chr1:248366520 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48638 0 0 0 0 0 exosome 0.500231643983449 0 0 0.000463287966897097 hm5C_site_3958 DeepMRMD:0;iRNA_m5C:0.000463287966897097 3959 chr16 2871110 2871110 1 + C T COAD 2871110 + 2871090 2871130 41 GGCGGGAAGGATGCCTGCTTCGTGAGTGTCCTTGCCACCAC GGCGGGAAGGATGCCTGCTTTGTGAGTGTCCTTGCCACCAC Direct Loss 0.958531220118763 0 0.45330283 0 prediction 0.917062440237525 Functional Loss - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2871110 chr16:2871110 synonymous SNV . 0 21 hm5C_associated_SNPs_48639 0 0 1 0 1 chromatin 0.500231954489773 0 0 0.000463908979546623 hm5C_site_3959 DeepMRMD:0;iRNA_m5C:0.000463908979546623 3960 chr6 5004171 5004171 1 + G A CESC 5004171 - 5004151 5004191 41 GTTTGCGAGAAATCCAACTTCGGCAACCACAAGTCGCGCCA GTTTGCGAGAAATCCAACTTTGGCAACCACAAGTCGCGCCA Direct Loss 0.958529084265638 0 0.61901146 0 prediction 0.917058168531276 Functional Loss - RPP40 ENSG00000124787 CDS Human protein_coding chr6:5004171 chr6:5004171 synonymous SNV . 0 21 hm5C_associated_SNPs_48640 0 0 1 0 0 Ribosome 0.500242248361086 0 0.23802292 0.000484496722172212 hm5C_site_3960 DeepMRMD:0.23802292;iRNA_m5C:0.000484496722172212 3961 chr1 46871356 46871356 1 + C T LUAD 46871356 + 46871336 46871376 41 GGGGGTGAAGGGGCCCTCATCGGGTCTGGAGGCTCCCCCCT GGGGGTGAAGGGGCCCTCATTGGGTCTGGAGGCTCCCCCCT Direct Loss 0.958525247866833 0 0.9462521 0 prediction 0.917050495733665 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871356 chr1:46871356 synonymous SNV . 0 21 hm5C_associated_SNPs_48641 0 0 0 0 0 Ribosome 0.500231643921099 0 0.8925042 0.000463287842197957 hm5C_site_3961 DeepMRMD:0.8925042;iRNA_m5C:0.000463287842197957 3962 chr17 46628509 46628509 1 + G A LUAD 46628509 - 46628489 46628529 41 GGCGGCGGCGGTGGCGGCGGCGGCGGAGGCAGTGGTGGCAG GGCGGCGGCGGTGGCGGCGGTGGCGGAGGCAGTGGTGGCAG Direct Loss 0.958521257141137 0 0.9259921 0 prediction 0.917042514282274 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628509 chr17:46628509 synonymous SNV . 0 21 hm5C_associated_SNPs_48642 0 0 0 0 1 Nucleus 0.500231643921091 0 0.8519842 0.000463287842181526 hm5C_site_3962 DeepMRMD:0.8519842;iRNA_m5C:0.000463287842181526 3963 chr1 2938393 2938393 1 + C T BLCA 2938393 + 2938373 2938413 41 CCTGAAATTCCAGGCTCCCTCAGCAGAGGCCAACCAGAAGA CCTGAAATTCCAGGCTCCCTTAGCAGAGGCCAACCAGAAGA Direct Loss 0.958516532142629 0 0.8369304 0 prediction 0.917033064285258 Functional Loss - ACTRT2 ENSG00000169717 CDS Human protein_coding chr1:2938393 chr1:2938393 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48643 0 0 0 0 0 unknown 0.500231643921092 0 0.6738608 0.000463287842184856 hm5C_site_3963 DeepMRMD:0.6738608;iRNA_m5C:0.000463287842184856 3964 chr10 94352911 94352911 1 + C G rs149291890 94352911 + 94352891 94352931 41 TCTGGGGATTCGGGCGGAGACGAGATTAGTGATTTGGCGGC TCTGGGGATTCGGGCGGAGAGGAGATTAGTGATTTGGCGGC Direct Loss 0.958514604474146 0 0.9024297 0 prediction 0.917029208948293 Functional Loss - KIF11 ENSG00000138160 upstream Human protein_coding chr10:94352911 chr10:94352911 . . 0 21 hm5C_associated_SNPs_48644 0 0 1 0 0 Cytosol 0.500231691388015 0 0.8048594 0.000463382776030308 hm5C_site_3964 DeepMRMD:0.8048594;iRNA_m5C:0.000463382776030308 3965 chr13 114150035 114150035 1 + C T BRCA 114150035 + 114150015 114150055 41 GGGTGGCTGCCATGCAGAGCCGGCAGTGGGTCCGGGACAGC GGGTGGCTGCCATGCAGAGCTGGCAGTGGGTCCGGGACAGC Direct Loss 0.958513545077262 0 0.73433584 0 prediction 0.917027090154524 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114150035 chr13:114150035 nonsynonymous SNV 0.030 2 21 hm5C_associated_SNPs_48645 0 0 1 0 0 Ribosome 0.500231643921084 0 0.46867168 0.000463287842167981 hm5C_site_3965 DeepMRMD:0.46867168;iRNA_m5C:0.000463287842167981 3966 chr7 90042176 90042176 1 + C T rs17862175 90042176 + 90042156 90042196 41 GTGAAATGTGCCCGGTATGACGGGAGCAGTGACTGCCTGAT GTGAAATGTGCCCGGTATGATGGGAGCAGTGACTGCCTGAT Direct Loss 0.958507638720853 0 0.8380296 0 prediction 0.917015277441706 Functional Loss - CLDN12 ENSG00000157224 CDS Human protein_coding chr7:90042176 chr7:90042176 synonymous SNV . 0 21 hm5C_associated_SNPs_48646 0 0 1 0 0 Ribosome 0.500231646444928 0 0.6760592 0.000463292889856692 hm5C_site_3966 DeepMRMD:0.6760592;iRNA_m5C:0.000463292889856692 3967 chr19 3179151 3179151 1 + C T LGG 3179151 + 3179131 3179171 41 CGCCCGCCCAGTGGTTCCTACGGGAGGGCCTGCTCTTCACC CGCCCGCCCAGTGGTTCCTATGGGAGGGCCTGCTCTTCACC Direct Loss 0.95849667973475 0 0.9417274 0 prediction 0.916993359469501 Functional Loss - S1PR4 ENSG00000125910 CDS Human protein_coding chr19:3179151 chr19:3179151 nonsynonymous SNV 0.990 4 21 hm5C_associated_SNPs_48647 0 0 0 0 0 exosome 0.500231643921088 0 0.8834548 0.00046328784217553 hm5C_site_3967 DeepMRMD:0.8834548;iRNA_m5C:0.00046328784217553 3968 chr6 21596141 21596141 1 + C G BLCA 21596141 + 21596121 21596161 41 CGAGGTGAGCGAGATGATCTCGGGAGACTGGCTCGAGTCCA CGAGGTGAGCGAGATGATCTGGGGAGACTGGCTCGAGTCCA Direct Loss 0.958494372360159 0 0.95927393 0 prediction 0.916988744720319 Functional Loss - SOX4 ENSG00000124766 CDS Human protein_coding chr6:21596141 chr6:21596141 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_48648 0 0 1 0 0 Nucleus 0.500231643921094 0 0.91854786 0.000463287842188631 hm5C_site_3968 DeepMRMD:0.91854786;iRNA_m5C:0.000463287842188631 3969 chr1 160389022 160389022 1 + C T BRCA 160389022 + 160389002 160389042 41 CGGGAGGAGCTGGAGCCTTGCGGGACGGCCTGCGAGGGCCT CGGGAGGAGCTGGAGCCTTGTGGGACGGCCTGCGAGGGCCT Direct Loss 0.958487861302572 0 0.9134257 0 prediction 0.916975722605144 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160389022 chr1:160389022 synonymous SNV . 0 21 hm5C_associated_SNPs_48649 0 0 1 0 0 exosome 0.500291617487208 0 0.8268514 0.000583234974415703 hm5C_site_3969 DeepMRMD:0.8268514;iRNA_m5C:0.000583234974415703 3970 chr14 20585719 20585719 1 + C T SKCM 20585719 + 20585699 20585739 41 TGCTGGGACTGACCAGCTCCCAGGATGTAGAGTTTCTTCTC TGCTGGGACTGACCAGCTCCTAGGATGTAGAGTTTCTTCTC Direct Loss 0.958481574028165 0 0.90086997 0 prediction 0.91696314805633 Functional Loss - OR4K17 ENSG00000176230 CDS Human protein_coding chr14:20585719 chr14:20585719 stopgain 0.482 0 21 hm5C_associated_SNPs_48650 0 0 0 0 0 unknown 0.500231643921092 0 0.80173994 0.000463287842184856 hm5C_site_3970 DeepMRMD:0.80173994;iRNA_m5C:0.000463287842184856 3971 chr14 52734613 52734613 1 + C A CESC 52734613 + 52734593 52734633 41 GTGATGGGCGGGGTGCTCTTCAGCACCGGCCTCCTGGGCAA GTGATGGGCGGGGTGCTCTTAAGCACCGGCCTCCTGGGCAA Direct Loss 0.958468772844901 0 0.6588241 0 prediction 0.916937545689801 Functional Loss - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52734613 chr14:52734613 nonsynonymous SNV 0.748 4 21 hm5C_associated_SNPs_48651 0 0 0 0 0 exosome 0.500231643921092 0 0.3176482 0.000463287842184856 hm5C_site_3971 DeepMRMD:0.3176482;iRNA_m5C:0.000463287842184856 3972 chr10 96447642 96447642 1 + C T SKCM 96447642 + 96447622 96447662 41 TGATCATGGAGAGGAGTTTTCTGGAAGAGGAAGTTTTCCAG TGATCATGGAGAGGAGTTTTTTGGAAGAGGAAGTTTTCCAG Direct Loss 0.958465935399798 0 0.79314816 0 prediction 0.916931870799596 Functional Loss - CYP2C18 ENSG00000108242 CDS Human protein_coding chr10:96447642 chr10:96447642 nonsynonymous SNV 0.933 3 21 hm5C_associated_SNPs_48652 0 0 1 0 1 exosome 0.500231643463731 0 0.58629632 0.000463286927461448 hm5C_site_3972 DeepMRMD:0.58629632;iRNA_m5C:0.000463286927461448 3973 chr10 45939199 45939199 1 + C T COAD 45939199 + 45939179 45939219 41 TCCCCAAGTCGGTCAAGAGCCGGGAGCAGCTGTCGGAGTAC TCCCCAAGTCGGTCAAGAGCTGGGAGCAGCTGTCGGAGTAC Direct Loss 0.958444677067476 0 0.89927053 0 prediction 0.916889354134953 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45939199 chr10:45939199 nonsynonymous SNV 0.940 1 21 hm5C_associated_SNPs_48653 0 0 0 0 2 Cytosol 0.500232224548185 0 0.79854106 0.000464449096369224 hm5C_site_3973 DeepMRMD:0.79854106;iRNA_m5C:0.000464449096369224 3974 chr6 110300411 110300411 1 + C A LUSC 110300411 + 110300391 110300431 41 ACAGCAGCAGGGGGGCCGGACACGGGCGAATGGGGACCCCC ACAGCAGCAGGGGGGCCGGAAACGGGCGAATGGGGACCCCC Direct Loss 0.958430579935822 0 0.5789403 0 prediction 0.916861159871643 Functional Loss - GPR6 ENSG00000146360 CDS Human protein_coding chr6:110300411 chr6:110300411 nonsynonymous SNV 0.016 0 21 hm5C_associated_SNPs_48654 0 0 0 0 0 unknown 0.500231693558335 0 0.1578806 0.000463387116670599 hm5C_site_3974 DeepMRMD:0.1578806;iRNA_m5C:0.000463387116670599 3975 chr5 140531213 140531213 1 + C T COAD 140531213 + 140531193 140531233 41 CCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCCCGCC CCTCCTACACCCTGTTCGTCTGCGAGAACAACAGCCCCGCC Direct Loss 0.958415916953963 0 0.1448454 0 prediction 0.916831833907926 Functional Loss - PCDHB6 ENSG00000113211 CDS Human protein_coding chr5:140531213 chr5:140531213 nonsynonymous SNV 0.741 3 21 hm5C_associated_SNPs_48655 0 0 0 0 0 exosome 0.500231643921082 0 0 0.00046328784216465 hm5C_site_3975 DeepMRMD:0;iRNA_m5C:0.00046328784216465 3976 chr1 200868717 200868717 1 + C T rs552128674 200868717 + 200868697 200868737 41 AGCTGAGGAGACTCTGCCTTCGGGAAGCGGTGAGGCCCCAG AGCTGAGGAGACTCTGCCTTTGGGAAGCGGTGAGGCCCCAG Direct Loss 0.958415472149121 0 0.8770673 0 prediction 0.916830944298242 Functional Loss - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200868717 chr1:200868717 nonsynonymous SNV 0.978 4 21 hm5C_associated_SNPs_48656 0 0 1 0 1 cytosol 0.50023164509146 0 0.7541346 0.00046329018292024 hm5C_site_3976 DeepMRMD:0.7541346;iRNA_m5C:0.00046329018292024 3977 chr7 43548591 43548591 1 + G A COAD 43548591 - 43548571 43548611 41 ACAGAAGGAAGAAGAACTCCCGCGAGGGGCCACTGTAGTCC ACAGAAGGAAGAAGAACTCCTGCGAGGGGCCACTGTAGTCC Direct Loss 0.958394555764287 0 0.3152843 0 prediction 0.916789111528574 Functional Loss - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43548591 chr7:43548591 nonsynonymous SNV 0.339 4 21 hm5C_associated_SNPs_48657 0 0 0 0 0 Cytosol 0.500231643914786 0 0 0.000463287829572945 hm5C_site_3977 DeepMRMD:0;iRNA_m5C:0.000463287829572945 3978 chrX 73749107 73749107 1 + C T UCEC 73749107 + 73749087 73749127 41 ATTCCCCTGTGCCGGGACTTCGGGGGCCTTATCGTCGTCTG ATTCCCCTGTGCCGGGACTTTGGGGGCCTTATCGTCGTCTG Direct Loss 0.958394518437052 0 0.9298521 0 prediction 0.916789036874104 Functional Loss - SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73749107 chrX:73749107 synonymous SNV . 0 21 hm5C_associated_SNPs_48658 0 0 0 0 1 Ribosome 0.500231643921254 0 0.8597042 0.000463287842508597 hm5C_site_3978 DeepMRMD:0.8597042;iRNA_m5C:0.000463287842508597 3979 chr11 2416744 2416744 1 + C T rs146021958 2416744 + 2416724 2416764 41 GCTGTGGTGAAGACCTTCCACGAGACGGTGCGGCCCCGGGG GCTGTGGTGAAGACCTTCCATGAGACGGTGCGGCCCCGGGG Direct Loss 0.958386715980672 0 0.24186513 0 prediction 0.916773431961343 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2416744 chr11:2416744 synonymous SNV . 0 21 hm5C_associated_SNPs_48659 0 0 1 0 2 Ribosome 0.500231643948208 0 0 0.000463287896415254 hm5C_site_3979 DeepMRMD:0;iRNA_m5C:0.000463287896415254 3980 chr11 128786602 128786602 1 + C T SKCM 128786602 + 128786582 128786622 41 CCCAAGGGGCTGGGTGGGTCCAGGGAGGCCAGGGGCTCGGT CCCAAGGGGCTGGGTGGGTCTAGGGAGGCCAGGGGCTCGGT Direct Loss 0.958374751466741 0 0.9172981 0 prediction 0.916749502933483 Functional Loss - KCNJ5 ENSG00000120457 CDS Human protein_coding chr11:128786602 chr11:128786602 synonymous SNV . 0 21 hm5C_associated_SNPs_48660 0 0 0 0 0 Ribosome 0.500231643631831 0 0.8345962 0.000463287263661627 hm5C_site_3980 DeepMRMD:0.8345962;iRNA_m5C:0.000463287263661627 3981 chr6 44120386 44120386 1 + C T SKCM 44120386 + 44120366 44120406 41 GCCTGGATGATGTGCGTCTTCACGGTGGTCATGACCTACAG GCCTGGATGATGTGCGTCTTTACGGTGGTCATGACCTACAG Direct Loss 0.958364744460137 0 0.39487922 0 prediction 0.916729488920273 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44120386 chr6:44120386 synonymous SNV . 0 21 hm5C_associated_SNPs_48661 0 0 1 0 2 Ribosome 0.50024100725922 0 0 0.000482014518440765 hm5C_site_3981 DeepMRMD:0;iRNA_m5C:0.000482014518440765 3982 chr10 101556999 101556999 1 + C T COAD 101556999 + 101556979 101557019 41 CCAGGCGGGCACTCCAGAGACGGCAGGAGAAGAGCTCCCAG CCAGGCGGGCACTCCAGAGATGGCAGGAGAAGAGCTCCCAG Direct Loss 0.958353383031385 0 0.8910206 0 prediction 0.916706766062769 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101556999 chr10:101556999 nonsynonymous SNV 0.028 3 21 hm5C_associated_SNPs_48662 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0 0.7820412 0.000463287842184856 hm5C_site_3982 DeepMRMD:0.7820412;iRNA_m5C:0.000463287842184856 3983 chrX 101381908 101381908 1 + C G BRCA 101381908 + 101381888 101381928 41 AGCCAGAAGTAGCTTGTATTCTGGAAGACAAGAAGTTAGAA AGCCAGAAGTAGCTTGTATTGTGGAAGACAAGAAGTTAGAA Direct Loss 0.958350972618621 0 0.87932026 0 prediction 0.916701945237242 Functional Loss - TCEAL2 ENSG00000184905 CDS Human protein_coding chrX:101381908 chrX:101381908 nonsynonymous SNV 0.141 0 21 hm5C_associated_SNPs_48663 0 0 0 0 0 exosome 0.500231644053929 0 0.75864052 0.000463288107857007 hm5C_site_3983 DeepMRMD:0.75864052;iRNA_m5C:0.000463288107857007 3984 chr11 65820149 65820149 1 + C T LUSC 65820149 + 65820129 65820169 41 TACTTTGCCCTGCAGGTAATCGCGAGGAGCTGGTGGAGCGG TACTTTGCCCTGCAGGTAATTGCGAGGAGCTGGTGGAGCGG Direct Loss 0.958347679029457 0 0.9075857 0 prediction 0.916695358058915 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65820149 chr11:65820149 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_48664 0 0 1 0 2 Nucleus 0.500231643921092 0 0.8151714 0.000463287842184856 hm5C_site_3984 DeepMRMD:0.8151714;iRNA_m5C:0.000463287842184856 3985 chr1 18808925 18808925 1 + C A UCEC 18808925 + 18808905 18808945 41 GGGCAGAGCGCGAGCTGATCCTGCAGCGCCGGCTCCGGGGC GGGCAGAGCGCGAGCTGATCATGCAGCGCCGGCTCCGGGGC Direct Loss 0.958346319964167 0 0.6266823 0 prediction 0.916692639928335 Functional Loss - KLHDC7A ENSG00000179023 CDS Human protein_coding chr1:18808925 chr1:18808925 nonsynonymous SNV 0.908 4 21 hm5C_associated_SNPs_48665 0 0 0 0 0 Cytosol 0.500231643844525 0 0.2533646 0.000463287689050684 hm5C_site_3985 DeepMRMD:0.2533646;iRNA_m5C:0.000463287689050684 3986 chr8 55372161 55372161 1 + C T ESCA 55372161 + 55372141 55372181 41 GCCCGCGGGTCCCTCGATTCCGGGCCTCCTGGCGCCACCCA GCCCGCGGGTCCCTCGATTCTGGGCCTCCTGGCGCCACCCA Direct Loss 0.958335507842981 0 0.9465841 0 prediction 0.916671015685962 Functional Loss - SOX17 ENSG00000164736 CDS Human protein_coding chr8:55372161 chr8:55372161 nonsynonymous SNV 0.546 1 21 hm5C_associated_SNPs_48666 0 0 0 0 0 Cytosol 0.500231643965996 0 0.8931682 0.000463287931991907 hm5C_site_3986 DeepMRMD:0.8931682;iRNA_m5C:0.000463287931991907 3987 chr16 2512476 2512476 1 + C G rs555287901 2512476 + 2512456 2512496 41 AGGCGGAGGCGGGGCGCCTGCGGAAGGCCTGCTCGCTGCTG AGGCGGAGGCGGGGCGCCTGGGGAAGGCCTGCTCGCTGCTG Direct Loss 0.958334490390355 0 0.92586267 0 prediction 0.916668980780709 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2512476 chr16:2512476 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48667 0 0 1 0 2 Ribosome 0.500231643921092 0 0.85172534 0.000463287842184856 hm5C_site_3987 DeepMRMD:0.85172534;iRNA_m5C:0.000463287842184856 3988 chr8 48921025 48921025 1 + C T LUAD 48921025 + 48921005 48921045 41 GCAGGAGAAGATGGCGGTCTCCACAGGTCGGTTCCCGGGCC GCAGGAGAAGATGGCGGTCTTCACAGGTCGGTTCCCGGGCC Direct Loss 0.958325102028005 0 0.86477995 0 prediction 0.916650204056009 Functional Loss - UBE2V2 ENSG00000169139 CDS Human protein_coding chr8:48921025 chr8:48921025 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_48668 0 0 1 0 1 Ribosome 0.500231643919991 0 0.7295599 0.000463287839981286 hm5C_site_3988 DeepMRMD:0.7295599;iRNA_m5C:0.000463287839981286 3989 chr10 124671216 124671216 1 + C T STAD 124671216 + 124671196 124671236 41 GGAAGCAGCTTACTGGTTGCCGCGATGGTGCTCCTAAGTGT GGAAGCAGCTTACTGGTTGCTGCGATGGTGCTCCTAAGTGT Direct Loss 0.958310753209673 0 0.20515427 0 prediction 0.916621506419346 Functional Loss - FAM24A ENSG00000203795 CDS Human protein_coding chr10:124671216 chr10:124671216 synonymous SNV . 0 21 hm5C_associated_SNPs_48669 0 0 0 0 2 unknown 0.500231644131263 0 0 0.000463288262526618 hm5C_site_3989 DeepMRMD:0;iRNA_m5C:0.000463288262526618 3990 chrX 152227935 152227935 1 + C T rs192053077 152227935 + 152227915 152227955 41 GTCCCCCAACTCACCGTTCCCGGGACAGGCTGCCCCCTGTT GTCCCCCAACTCACCGTTCCTGGGACAGGCTGCCCCCTGTT Direct Loss 0.95828985659091 0 0.9223978 0 prediction 0.91657971318182 Functional Loss - PNMA3 ENSG00000183837 UTR3 Human protein_coding chrX:152227935 chrX:152227935 . . 0 21 hm5C_associated_SNPs_48670 0 0 0 0 0 exosome 0.500231643921077 0 0.8447956 0.000463287842153104 hm5C_site_3990 DeepMRMD:0.8447956;iRNA_m5C:0.000463287842153104 3991 chr1 87797776 87797776 1 + C T TGCT 87797776 + 87797756 87797796 41 TGGAAGCGGTGCGCAGGCTGCGGGGGCAAGATTGCGGACCG TGGAAGCGGTGCGCAGGCTGTGGGGGCAAGATTGCGGACCG Direct Loss 0.958285970215323 0 0.935693 0 prediction 0.916571940430646 Functional Loss - LMO4 ENSG00000143013 CDS Human protein_coding chr1:87797776 chr1:87797776 synonymous SNV . 0 21 hm5C_associated_SNPs_48671 0 0 1 0 1 Ribosome 0.50023164256735 0 0.871386 0.000463285134700619 hm5C_site_3991 DeepMRMD:0.871386;iRNA_m5C:0.000463285134700619 3992 chr15 76630126 76630126 1 + C T COAD 76630126 + 76630106 76630146 41 CCTTCCCCGGCAGAGAAGCCCGGGACGGCCATGTGCGTGGG CCTTCCCCGGCAGAGAAGCCTGGGACGGCCATGTGCGTGGG Direct Loss 0.958283585021346 0 0.9043125 0 prediction 0.916567170042691 Functional Loss - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630126 chr15:76630126 synonymous SNV . 0 21 hm5C_associated_SNPs_48672 0 0 1 0 1 Cytosol 0.500231643696113 0 0.808625 0.000463287392225897 hm5C_site_3992 DeepMRMD:0.808625;iRNA_m5C:0.000463287392225897 3993 chr5 115298524 115298524 1 + G A STAD 115298524 - 115298504 115298544 41 TCGCGTGCACTGCTGGGTTTCGGGGTTGGCGTCGGCTTCTG TCGCGTGCACTGCTGGGTTTTGGGGTTGGCGTCGGCTTCTG Direct Loss 0.958276309185416 0 0.9448389 0 prediction 0.916552618370832 Functional Loss - LVRN ENSG00000172901 CDS Human protein_coding chr5:115298524 chr5:115298524 synonymous SNV . 0 21 hm5C_associated_SNPs_48673 0 0 0 0 0 Cytosol 0.500231643921102 0 0.8896778 0.00046328784220373 hm5C_site_3993 DeepMRMD:0.8896778;iRNA_m5C:0.00046328784220373 3994 chr15 22742954 22742954 1 + C T UCEC 22742954 + 22742934 22742974 41 GGAGGCAGGAGGAGAAGATTCACGAGCAGGAGAAGATACGG GGAGGCAGGAGGAGAAGATTTACGAGCAGGAGAAGATACGG Direct Loss 0.95827577680936 0 0.18757227 0 prediction 0.916551553618719 Functional Loss - GOLGA6L1;GOLGA6L22 ENSG00000197414 CDS Human other chr15:22742954 chr15:22742954 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48674 0 0 0 0 0 unknown 0.500231643790138 0 0 0.000463287580275473 hm5C_site_3994 DeepMRMD:0;iRNA_m5C:0.000463287580275473 3995 chr11 103907968 103907968 1 + C A COAD 103907968 + 103907948 103907988 41 AGGTGGCCGGCCTGCAAGGTCTGGGCAGCCCCGCCCTGATC AGGTGGCCGGCCTGCAAGGTATGGGCAGCCCCGCCCTGATC Direct Loss 0.95826875916114 0 0.6716757 0 prediction 0.91653751832228 Functional Loss - DDI1 ENSG00000170967 CDS Human protein_coding chr11:103907968 chr11:103907968 nonsynonymous SNV 0.349 0 21 hm5C_associated_SNPs_48675 0 0 0 0 0 exosome 0.500231643418974 0 0.3433514 0.000463286837947052 hm5C_site_3995 DeepMRMD:0.3433514;iRNA_m5C:0.000463286837947052 3996 chr5 139781720 139781720 1 + C T BLCA 139781720 + 139781700 139781740 41 GCCGGGCCAGCGTCGGGAGTCGGCAGCAGCGGCGGCGGCGG GCCGGGCCAGCGTCGGGAGTTGGCAGCAGCGGCGGCGGCGG Direct Loss 0.958268376525287 0 0.9108557 0 prediction 0.916536753050573 Functional Loss - ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139781720 chr5:139781720 synonymous SNV . 0 21 hm5C_associated_SNPs_48676 0 0 1 0 0 unknown 0.50023164246686 0 0.8217114 0.000463284933719166 hm5C_site_3996 DeepMRMD:0.8217114;iRNA_m5C:0.000463284933719166 3997 chr1 43166659 43166659 1 + C T LUSC 43166659 + 43166639 43166679 41 GCTGAGAATTCGTCCGCTCCCGAGGCTGAGCAGGGCGGGGC GCTGAGAATTCGTCCGCTCCTGAGGCTGAGCAGGGCGGGGC Direct Loss 0.958261802733863 0 0.927819 0 prediction 0.916523605467726 Functional Loss - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43166659 chr1:43166659 synonymous SNV . 0 21 hm5C_associated_SNPs_48677 0 0 1 0 1 Cytosol 0.500231643921021 0 0.855638 0.000463287842041638 hm5C_site_3997 DeepMRMD:0.855638;iRNA_m5C:0.000463287842041638 3998 chr18 59221631 59221631 1 + C A LUAD 59221631 + 59221611 59221651 41 ACGCGGCAGGACATGCTGCCCGAGATCGAGAGCCTCTCCCG ACGCGGCAGGACATGCTGCCAGAGATCGAGAGCCTCTCCCG Direct Loss 0.958250639353762 0 0.7956493 0 prediction 0.916501278707524 Functional Loss - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59221631 chr18:59221631 synonymous SNV . 0 21 hm5C_associated_SNPs_48678 0 0 0 0 0 nucleus 0.500234633610494 0 0.5912986 0.000469267220988279 hm5C_site_3998 DeepMRMD:0.5912986;iRNA_m5C:0.000469267220988279 3999 chr15 40751214 40751214 1 + C A UCEC 40751214 + 40751194 40751234 41 AGGAGGAAGTCGGGACCTGTCTCCAGAGCCAGCACCCGATG AGGAGGAAGTCGGGACCTGTATCCAGAGCCAGCACCCGATG Direct Loss 0.958247514697297 0 0.9501362 0 prediction 0.916495029394594 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40751214 chr15:40751214 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48679 0 0 1 0 0 chromatin 0.500231401920048 0 0.9002724 0.000462803840096004 hm5C_site_3999 DeepMRMD:0.9002724;iRNA_m5C:0.000462803840096004 4000 chr5 177031312 177031312 1 + C T GBM 177031312 + 177031292 177031332 41 GGGGACGTGGCCCGGGCAGTCAGGGGACAAGGGCAGGAGAC GGGGACGTGGCCCGGGCAGTTAGGGGACAAGGGCAGGAGAC Direct Loss 0.958247499981613 0 0.94085425 0 prediction 0.916494999963225 Functional Loss - B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177031312 chr5:177031312 synonymous SNV . 0 21 hm5C_associated_SNPs_48680 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8817085 0.000463287842184856 hm5C_site_4000 DeepMRMD:0.8817085;iRNA_m5C:0.000463287842184856 4001 chr4 69978250 69978250 1 + C T LUAD 69978250 + 69978230 69978270 41 CCCCTGGATCGAGCAGTCTTCTGGATTGAATTTGTCATGCG CCCCTGGATCGAGCAGTCTTTTGGATTGAATTTGTCATGCG Direct Loss 0.958236187480215 0 0.17762643 0 prediction 0.91647237496043 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69978250 chr4:69978250 synonymous SNV . 0 21 hm5C_associated_SNPs_48681 0 0 0 0 1 Endoplasmic reticulum 0.500231652205585 0 0 0.000463304411169929 hm5C_site_4001 DeepMRMD:0;iRNA_m5C:0.000463304411169929 4002 chr11 114569031 114569031 1 + C A UCEC 114569031 + 114569011 114569051 41 GGGATCAGCTGGACATCCTTCTGGAGGTGAGGGACCACTTG GGGATCAGCTGGACATCCTTATGGAGGTGAGGGACCACTTG Direct Loss 0.95823480479891 0 0.2360278 0 prediction 0.91646960959782 Functional Loss - NXPE2 ENSG00000204361 CDS Human protein_coding chr11:114569031 chr11:114569031 nonsynonymous SNV 0.041 3 21 hm5C_associated_SNPs_48682 0 0 0 0 0 exosome 0.500231643920822 0 0 0.000463287841643956 hm5C_site_4002 DeepMRMD:0;iRNA_m5C:0.000463287841643956 4003 chr11 66325263 66325263 1 + C T BLCA 66325263 + 66325243 66325283 41 AGCGCAAACTAGAGGACTTTCGGGACTACCGGCGTCTGCAC AGCGCAAACTAGAGGACTTTTGGGACTACCGGCGTCTGCAC Direct Loss 0.958197829675129 0 0.9203166 0 prediction 0.916395659350257 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325263 chr11:66325263 unknown 0.997 2 21 hm5C_associated_SNPs_48683 0 0 0 0 1 Cytosol 0.500231616905118 0 0.8406332 0.000463233810236607 hm5C_site_4003 DeepMRMD:0.8406332;iRNA_m5C:0.000463233810236607 4004 chr2 173292122 173292122 1 + C T rs556066382 173292122 + 173292102 173292142 41 GCGCAGTGGGGCTGCTTCGCCGCGAGCTCGCCTCCGGGGCT GCGCAGTGGGGCTGCTTCGCTGCGAGCTCGCCTCCGGGGCT Direct Loss 0.958186331393771 0 0.8478553 0 prediction 0.916372662787541 Functional Loss - ITGA6 ENSG00000091409 UTR5 Human protein_coding chr2:173292122 chr2:173292122 . . 0 21 hm5C_associated_SNPs_48684 0 0 0 0 1 Nucleus 0.500231617217449 0 0.6957106 0.000463234434898485 hm5C_site_4004 DeepMRMD:0.6957106;iRNA_m5C:0.000463234434898485 4005 chr4 941568 941568 1 + C G rs148512239 941568 + 941548 941588 41 AGAGCAGGCACTGGATACACCGGGGGACTGCCCCCCAGGCA AGAGCAGGCACTGGATACACGGGGGGACTGCCCCCCAGGCA Direct Loss 0.958165920961486 0 0.9355941 0 prediction 0.916331841922972 Functional Loss - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:941568 chr4:941568 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48685 0 0 1 0 1 chromatin 0.50023164598828 0 0.8711882 0.000463291976560143 hm5C_site_4005 DeepMRMD:0.8711882;iRNA_m5C:0.000463291976560143 4006 chr10 21805459 21805459 1 + G C rs553562521 21805459 - 21805439 21805479 41 GAGGAGGAGGAGGGGGGCAGCGGGGCCTCGGATTCCAGTGA GAGGAGGAGGAGGGGGGCAGGGGGGCCTCGGATTCCAGTGA Direct Loss 0.958161112958879 0 0.9163847 0 prediction 0.916322225917758 Functional Loss - SKIDA1 ENSG00000180592 CDS Human protein_coding chr10:21805459 chr10:21805459 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_48686 0 0 0 0 0 Nucleus 0.500231940551207 0 0.8327694 0.000463881102413577 hm5C_site_4006 DeepMRMD:0.8327694;iRNA_m5C:0.000463881102413577 4007 chrX 153247741 153247741 1 + C T SKCM 153247741 + 153247721 153247761 41 TCGTGGCTGCACAGGGGCGGCGCGATGGGGCTGGGTCCCCG TCGTGGCTGCACAGGGGCGGTGCGATGGGGCTGGGTCCCCG Direct Loss 0.958156542582943 0 0.86828864 0 prediction 0.916313085165885 Functional Loss - TMEM187 ENSG00000177854 CDS Human protein_coding chrX:153247741 chrX:153247741 synonymous SNV . 0 21 hm5C_associated_SNPs_48687 0 0 0 0 0 Endoplasmic reticulum 0.500231643120524 0 0.73657728 0.0004632862410483 hm5C_site_4007 DeepMRMD:0.73657728;iRNA_m5C:0.0004632862410483 4008 chr11 7111237 7111237 1 + C T COAD 7111237 + 7111217 7111257 41 TGCGCGGCGCCGCCCCAGGACGGGGGACACCGCCATCTTAC TGCGCGGCGCCGCCCCAGGATGGGGGACACCGCCATCTTAC Direct Loss 0.95814322132238 0 0.90766567 0 prediction 0.91628644264476 Functional Loss - RBMXL2 ENSG00000170748 CDS Human protein_coding chr11:7111237 chr11:7111237 nonsynonymous SNV 0.069 2 21 hm5C_associated_SNPs_48688 0 0 0 0 0 exosome 0.500231643921265 0 0.81533134 0.000463287842529692 hm5C_site_4008 DeepMRMD:0.81533134;iRNA_m5C:0.000463287842529692 4009 chr16 31230715 31230715 1 + C T LGG 31230715 + 31230695 31230735 41 ACCGCGAGGCAGAGCGTGTACGGGGTGAGGCAGGGGTCGCC ACCGCGAGGCAGAGCGTGTATGGGGTGAGGCAGGGGTCGCC Direct Loss 0.958142965806091 0 0.91224825 0 prediction 0.916285931612183 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31230715 chr16:31230715 nonsynonymous SNV 0.036 0 21 hm5C_associated_SNPs_48689 0 0 0 0 0 exosome 0.500231643921278 0 0.8244965 0.000463287842555893 hm5C_site_4009 DeepMRMD:0.8244965;iRNA_m5C:0.000463287842555893 4010 chr20 30193226 30193226 1 + C G rs11545368 30193226 + 30193206 30193246 41 GGCAGCACCGCCACCGCCGCCGCGGGCCCCAGCTGCGCGCT GGCAGCACCGCCACCGCCGCGGCGGGCCCCAGCTGCGCGCT Direct Loss 0.958126231782517 0 0.89190936 0 prediction 0.916252463565034 Functional Loss - ID1 ENSG00000125968 CDS Human protein_coding chr20:30193226 chr20:30193226 synonymous SNV . 0 21 hm5C_associated_SNPs_48690 0 0 1 0 0 Endoplasmic reticulum 0.500231920790019 0 0.78381872 0.000463841580037316 hm5C_site_4010 DeepMRMD:0.78381872;iRNA_m5C:0.000463841580037316 4011 chr20 25199209 25199209 1 + C T COAD 25199209 + 25199189 25199229 41 CCTCGGGCTCGGGCTGATGTCGGCACGCCTGGCGATCCTGG CCTCGGGCTCGGGCTGATGTTGGCACGCCTGGCGATCCTGG Direct Loss 0.958124761841726 0 0.910556 0 prediction 0.916249523683451 Functional Loss - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25199209 chr20:25199209 nonsynonymous SNV 0.951 3 21 hm5C_associated_SNPs_48691 0 0 1 0 2 Endoplasmic reticulum 0.500228862061829 0 0.821112 0.000457724123658299 hm5C_site_4011 DeepMRMD:0.821112;iRNA_m5C:0.000457724123658299 4012 chr19 8841995 8841995 1 + C A LGG 8841995 + 8841975 8842015 41 CGAGATGGCGCTGTCCACCTCAGGGGTGCTGATCCTAATGC CGAGATGGCGCTGTCCACCTAAGGGGTGCTGATCCTAATGC Direct Loss 0.958121741279247 0 0.94483227 0 prediction 0.916243482558494 Functional Loss - OR2Z1 ENSG00000181733 CDS Human protein_coding chr19:8841995 chr19:8841995 stopgain 0.007 0 21 hm5C_associated_SNPs_48692 0 0 0 0 0 unknown 0.500231643921092 0 0.88966454 0.000463287842184856 hm5C_site_4012 DeepMRMD:0.88966454;iRNA_m5C:0.000463287842184856 4013 chr1 38261455 38261455 1 + C T STAD 38261455 + 38261435 38261475 41 CCTGGCATGGCTGATGATAACGGGGAGCCCTCAGATGACCT CCTGGCATGGCTGATGATAATGGGGAGCCCTCAGATGACCT Direct Loss 0.958119888621627 0 0.8861102 0 prediction 0.916239777243254 Functional Loss - MANEAL ENSG00000185090 CDS Human protein_coding chr1:38261455 chr1:38261455 nonsynonymous SNV 0.807 0 21 hm5C_associated_SNPs_48693 0 0 1 0 2 Ribosome 0.50023164392109 0 0.7722204 0.000463287842179083 hm5C_site_4013 DeepMRMD:0.7722204;iRNA_m5C:0.000463287842179083 4014 chr11 74204591 74204591 1 + G A rs60455691 74204591 - 74204571 74204611 41 GCTCCTGCTCTGCGAGCCCGCGGGGCCCGTGTATACGGCCG GCTCCTGCTCTGCGAGCCCGTGGGGCCCGTGTATACGGCCG Direct Loss 0.958119491585572 0 0.9096806 0 prediction 0.916238983171143 Functional Loss - LIPT2 ENSG00000175536 CDS Human protein_coding chr11:74204591 chr11:74204591 nonsynonymous SNV 0.988 1 21 hm5C_associated_SNPs_48694 1 0 0 0 0 exosome 0.500231643918241 0 0.8193612 0.000463287836482751 hm5C_site_4014 DeepMRMD:0.8193612;iRNA_m5C:0.000463287836482751 not specified not specified 4015 chr16 31539977 31539977 1 + C G LUSC 31539977 + 31539957 31539997 41 ACAGGGACTTCCTGAAGTCTCATGAGCTCCCGAGTCACCCA ACAGGGACTTCCTGAAGTCTGATGAGCTCCCGAGTCACCCA Direct Loss 0.958113284179066 0 0.39983863 0 prediction 0.916226568358131 Functional Loss - AHSP ENSG00000169877 CDS Human protein_coding chr16:31539977 chr16:31539977 nonsynonymous SNV 0.004 1 21 hm5C_associated_SNPs_48695 0 0 0 0 0 Cytosol 0.500231643921063 0 0 0.00046328784212557 hm5C_site_4015 DeepMRMD:0;iRNA_m5C:0.00046328784212557 4016 chr20 36361374 36361374 1 + C T BRCA 36361374 + 36361354 36361394 41 CTCGAGAACGCGGCCGCTATCGGGAAGAAGAAATGACTGTG CTCGAGAACGCGGCCGCTATTGGGAAGAAGAAATGACTGTG Direct Loss 0.958110561932265 0 0.93251157 0 prediction 0.91622112386453 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36361374 chr20:36361374 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_48696 0 0 1 0 2 Cytosol 0.500236214186664 0 0.86502314 0.000472428373327505 hm5C_site_4016 DeepMRMD:0.86502314;iRNA_m5C:0.000472428373327505 4017 chr2 11052649 11052649 1 + C T UCEC 11052649 + 11052629 11052669 41 TCGTCAACGTGGGGGGCGTGCGGCAGGTGCTGTACGGGGAC TCGTCAACGTGGGGGGCGTGTGGCAGGTGCTGTACGGGGAC Direct Loss 0.958101357937654 0 0.8867909 0 prediction 0.916202715875309 Functional Loss - KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11052649 chr2:11052649 nonsynonymous SNV 0.995 5 21 hm5C_associated_SNPs_48697 0 0 0 0 0 exosome 0.500231643922954 0 0.7735818 0.000463287845908766 hm5C_site_4017 DeepMRMD:0.7735818;iRNA_m5C:0.000463287845908766 4018 chrX 73524172 73524172 1 + C T UCEC 73524172 + 73524152 73524192 41 GGGATGCCCTAGAGGAGGAGCTGGAGGGCGAAGAGGTGGAG GGGATGCCCTAGAGGAGGAGTTGGAGGGCGAAGAGGTGGAG Direct Loss 0.958084179795052 0 0.86863935 0 prediction 0.916168359590104 Functional Loss - ZCCHC13 ENSG00000187969 CDS Human protein_coding chrX:73524172 chrX:73524172 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_48698 0 0 0 0 0 unknown 0.500231646511555 0 0.7372787 0.000463293023109879 hm5C_site_4018 DeepMRMD:0.7372787;iRNA_m5C:0.000463293023109879 4019 chrX 152227516 152227516 1 + C T rs781978788 152227516 + 152227496 152227536 41 CAGCAGGGGTACTGGGTACCCGGCAGGCCAGTGCCCTCACA CAGCAGGGGTACTGGGTACCTGGCAGGCCAGTGCCCTCACA Direct Loss 0.958079562506924 0 0.19654638 0 prediction 0.916159125013847 Functional Loss - PNMA3 ENSG00000183837 UTR3 Human protein_coding chrX:152227516 chrX:152227516 . . 0 21 hm5C_associated_SNPs_48699 0 0 0 0 0 exosome 0.500231643921092 0 0 0.000463287842184634 hm5C_site_4019 DeepMRMD:0;iRNA_m5C:0.000463287842184634 4020 chr14 52781978 52781978 1 + C A UCEC 52781978 + 52781958 52781998 41 GAAGCCGCTGCGGACCTTCCCTGGGCAGTGGCCGGGGCGGC GAAGCCGCTGCGGACCTTCCATGGGCAGTGGCCGGGGCGGC Direct Loss 0.958030445473769 0 0.3838415 0 prediction 0.916060890947539 Functional Loss - PTGER2 ENSG00000125384 CDS Human protein_coding chr14:52781978 chr14:52781978 nonsynonymous SNV 0.022 1 21 hm5C_associated_SNPs_48700 0 0 0 0 0 exosome 0.500231643916814 0 0 0.000463287833628589 hm5C_site_4020 DeepMRMD:0;iRNA_m5C:0.000463287833628589 4021 chr5 140751754 140751754 1 + C T UCEC 140751754 + 140751734 140751774 41 GGTGGCGGTGGACGCAGACTCGGGATACAACGCCTGGCTGT GGTGGCGGTGGACGCAGACTTGGGATACAACGCCTGGCTGT Direct Loss 0.958025158988965 0 0.95107996 0 prediction 0.91605031797793 Functional Loss - PCDHGB3 ENSG00000262209 CDS Human protein_coding chr5:140751754 chr5:140751754 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_48701 0 0 0 0 0 exosome 0.500231794409236 0 0.90215992 0.000463588818472083 hm5C_site_4021 DeepMRMD:0.90215992;iRNA_m5C:0.000463588818472083 4022 chr9 98231176 98231176 1 + C T COAD 98231176 + 98231156 98231196 41 CCTTGTGGAGCTGGTGCTCTCTGGGCTCTGGCAGCTGAGGG CCTTGTGGAGCTGGTGCTCTTTGGGCTCTGGCAGCTGAGGG Direct Loss 0.958009252966085 0 0.79484767 0 prediction 0.916018505932169 Functional Loss - PTCH1 ENSG00000185920 CDS Human protein_coding chr9:98231176 chr9:98231176 nonsynonymous SNV 0.953 2 21 hm5C_associated_SNPs_48702 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.58969534 0.000463287842184856 hm5C_site_4022 DeepMRMD:0.58969534;iRNA_m5C:0.000463287842184856 4023 chr6 105406005 105406005 1 + C A LUSC 105406005 + 105405985 105406025 41 AAAGGTGGTGGAGAAGAGCCCGGGAAGCTGCCGGAGCCGGC AAAGGTGGTGGAGAAGAGCCAGGGAAGCTGCCGGAGCCGGC Direct Loss 0.957992279135463 0 0.8600671 0 prediction 0.915984558270926 Functional Loss - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105406005 chr6:105406005 synonymous SNV . 0 21 hm5C_associated_SNPs_48703 0 0 1 0 0 chromatin 0.500231643921092 0 0.7201342 0.000463287842183968 hm5C_site_4023 DeepMRMD:0.7201342;iRNA_m5C:0.000463287842183968 4024 chr19 55593851 55593851 1 + C T UCEC 55593851 + 55593831 55593871 41 ACGTCGGGGGGGCCGGAGTTCGCGAGCAGTGTGCGGCGGCC ACGTCGGGGGGGCCGGAGTTTGCGAGCAGTGTGCGGCGGCC Direct Loss 0.957977098801732 0 0.7563412 0 prediction 0.915954197603463 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55593851 chr19:55593851 synonymous SNV . 0 21 hm5C_associated_SNPs_48704 0 0 1 0 1 Cytosol 0.500231643921093 0 0.5126824 0.000463287842185078 hm5C_site_4024 DeepMRMD:0.5126824;iRNA_m5C:0.000463287842185078 4025 chr1 87797878 87797878 1 + C A LUAD 87797878 + 87797858 87797898 41 CAGGCGCAGCTGGGCGACATCGGCACGTCCTGTTACACCAA CAGGCGCAGCTGGGCGACATAGGCACGTCCTGTTACACCAA Direct Loss 0.957975499557594 0 0.812232 0 prediction 0.915950999115189 Functional Loss - LMO4 ENSG00000143013 CDS Human protein_coding chr1:87797878 chr1:87797878 synonymous SNV . 0 21 hm5C_associated_SNPs_48705 0 0 1 0 1 Ribosome 0.500231643920173 0 0.624464 0.000463287840345883 hm5C_site_4025 DeepMRMD:0.624464;iRNA_m5C:0.000463287840345883 4026 chr7 143807095 143807095 1 + C A LUSC 143807095 + 143807075 143807115 41 ATCATGAGCTGGAGAGTGTGCACGATCCTGGTTCTCACGTC ATCATGAGCTGGAGAGTGTGAACGATCCTGGTTCTCACGTC Direct Loss 0.957970755267887 0 0.107417256 0 prediction 0.915941510535775 Functional Loss - OR2A2 ENSG00000221989 CDS Human protein_coding chr7:143807095 chr7:143807095 stopgain 0.010 0 21 hm5C_associated_SNPs_48706 0 0 0 0 0 unknown 0.500231605514155 0 0 0.000463211028310706 hm5C_site_4026 DeepMRMD:0;iRNA_m5C:0.000463211028310706 4027 chr17 80559729 80559729 1 + C T rs149691901 80559729 + 80559709 80559749 41 CAAGACTAGGCCTCAGGACGCGGGGGGAGCCATCCCCGCCG CAAGACTAGGCCTCAGGACGTGGGGGGAGCCATCCCCGCCG Direct Loss 0.957965768313497 0 0.9513935 0 prediction 0.915931536626994 Functional Loss - FOXK2 ENSG00000141568 UTR3 Human protein_coding chr17:80559729 chr17:80559729 . . 0 21 hm5C_associated_SNPs_48707 0 0 1 0 0 Cytosol 0.500231643921204 0 0.902787 0.000463287842408455 hm5C_site_4027 DeepMRMD:0.902787;iRNA_m5C:0.000463287842408455 4028 chr11 94277535 94277535 1 + C T MESO 94277535 + 94277515 94277555 41 GGGCCCGCGGCCTTTGCATTCTGGGACCGCCCCCTTCCATT GGGCCCGCGGCCTTTGCATTTTGGGACCGCCCCCTTCCATT Direct Loss 0.957961954133056 0 0.86382926 0 prediction 0.915923908266111 Functional Loss - FUT4 ENSG00000196371 CDS Human protein_coding chr11:94277535 chr11:94277535 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_48708 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0 0.72765852 0.000463287842184856 hm5C_site_4028 DeepMRMD:0.72765852;iRNA_m5C:0.000463287842184856 4029 chr10 99338335 99338335 1 + C T UCEC 99338335 + 99338315 99338355 41 ATTGAGAAGTTCCTGGCTGACGGGGGGTCAGCCGACACGTG ATTGAGAAGTTCCTGGCTGATGGGGGGTCAGCCGACACGTG Direct Loss 0.957960723609989 0 0.93261176 0 prediction 0.915921447219977 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99338335 chr10:99338335 synonymous SNV . 0 21 hm5C_associated_SNPs_48709 0 0 0 0 2 exosome 0.500231674036849 0 0.86522352 0.000463348073698633 hm5C_site_4029 DeepMRMD:0.86522352;iRNA_m5C:0.000463348073698633 4030 chr8 1949415 1949415 1 + C T rs534350763 1949415 + 1949395 1949435 41 GGGACTGAGCCCGGGGCTGCCGGGGAGAGCGAGAGCGAGGG GGGACTGAGCCCGGGGCTGCTGGGGAGAGCGAGAGCGAGGG Direct Loss 0.957959423726057 0 0.9211391 0 prediction 0.915918847452114 Functional Loss - KBTBD11 ENSG00000176595 CDS Human protein_coding chr8:1949415 chr8:1949415 synonymous SNV . 0 21 hm5C_associated_SNPs_48710 0 0 0 0 0 exosome 0.500231644233116 0 0.8422782 0.000463288466231671 hm5C_site_4030 DeepMRMD:0.8422782;iRNA_m5C:0.000463288466231671 4031 chr14 73957662 73957662 1 + C T rs144108591 73957662 + 73957642 73957682 41 TGCACCGCAGCCGCTGCATTCAGGAACCGCTTTAGCTTCGC TGCACCGCAGCCGCTGCATTTAGGAACCGCTTTAGCTTCGC Direct Loss 0.957952392869414 0 0.9234556 0 prediction 0.915904785738828 Functional Loss - RIOX1 ENSG00000170468 ncRNA_exonic Human protein_coding chr14:73957662 chr14:73957662 . . 0 21 hm5C_associated_SNPs_48711 0 0 0 0 0 unknown 0.500231643838043 0 0.8469112 0.000463287676085722 hm5C_site_4031 DeepMRMD:0.8469112;iRNA_m5C:0.000463287676085722 4032 chr12 110341913 110341913 1 + C G rs140383594 110341913 + 110341893 110341933 41 AGAAGAATCCGGGAGCAGCACGGGAAGCTGAAATCAGCCAA AGAAGAATCCGGGAGCAGCAGGGGAAGCTGAAATCAGCCAA Direct Loss 0.957947204452951 0 0.8348043 0 prediction 0.915894408905902 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110341913 chr12:110341913 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_48712 0 0 1 0 1 Cytosol 0.500231643921092 0 0.6696086 0.000463287842184856 hm5C_site_4032 DeepMRMD:0.6696086;iRNA_m5C:0.000463287842184856 4033 chr20 307308 307308 1 + C T CESC 307308 + 307288 307328 41 TGAAGAGGAGACGGTGGCGTCGGGGGAGGAGTCGCTGGGCT TGAAGAGGAGACGGTGGCGTTGGGGGAGGAGTCGCTGGGCT Direct Loss 0.957920853445058 0 0.93955755 0 prediction 0.915841706890116 Functional Loss - SOX12 ENSG00000177732 CDS Human protein_coding chr20:307308 chr20:307308 nonsynonymous SNV 0.983 2 21 hm5C_associated_SNPs_48713 0 0 1 0 0 Ribosome 0.500231643919973 0 0.8791151 0.000463287839946869 hm5C_site_4033 DeepMRMD:0.8791151;iRNA_m5C:0.000463287839946869 4034 chr12 72179446 72179446 1 + C T rs61754230 72179446 + 72179426 72179466 41 TGGTGGAGGGTGCTGTTCTTCTGGATAACTGTTCACGCCTA TGGTGGAGGGTGCTGTTCTTTTGGATAACTGTTCACGCCTA Direct Loss 0.957919988953672 0 0.40885073 0 prediction 0.915839977907345 Functional Loss - RAB21 ENSG00000080371 CDS Human protein_coding chr12:72179446 chr12:72179446 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_48714 0 1 1 0 0 Ribosome 0.500231643921096 0 0 0.000463287842192184 hm5C_site_4034 DeepMRMD:0;iRNA_m5C:0.000463287842192184 4035 chr9 129642636 129642636 1 + C T KICH 129642636 + 129642616 129642656 41 GGTCCATGCTGAGCTGTTTCCGAGGAGGGCGTGCCCGCCAG GGTCCATGCTGAGCTGTTTCTGAGGAGGGCGTGCCCGCCAG Direct Loss 0.957911285000507 0 0.9162824 0 prediction 0.915822570001015 Functional Loss - ZBTB34 ENSG00000177125 CDS Human protein_coding chr9:129642636 chr9:129642636 stopgain 0.998 1 21 hm5C_associated_SNPs_48715 0 0 1 0 0 nucleoplasm 0.500231643939745 0 0.8325648 0.000463287879489238 hm5C_site_4035 DeepMRMD:0.8325648;iRNA_m5C:0.000463287879489238 4036 chr9 138415805 138415805 1 + C T rs545463441 138415805 + 138415785 138415825 41 TACTGTGAGGGCGAGCTGCACGGGAAGCCGGTCCGAGGGGT TACTGTGAGGGCGAGCTGCATGGGAAGCCGGTCCGAGGGGT Direct Loss 0.957897825318918 0 0.8442463 0 prediction 0.915795650637836 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415805 chr9:138415805 synonymous SNV . 0 21 hm5C_associated_SNPs_48716 0 0 0 0 3 Nucleus 0.500231605927799 0 0.6884926 0.0004632118555985 hm5C_site_4036 DeepMRMD:0.6884926;iRNA_m5C:0.0004632118555985 4037 chr19 52095243 52095243 1 + G A rs62113347 52095243 - 52095223 52095263 41 GGATCACGAGGTCAGGAGATCGAGACCATCCTGGCCAACAC GGATCACGAGGTCAGGAGATTGAGACCATCCTGGCCAACAC Direct Loss 0.957878880014517 0 0.81791675 0 prediction 0.915757760029034 Functional Loss - LINC01530 ENSG00000167765 UTR3 Human other chr19:52095243 chr19:52095243 . . 0 21 hm5C_associated_SNPs_48717 0 0 0 0 0 unknown 0.500231643840024 0 0.6358335 0.000463287680048552 hm5C_site_4037 DeepMRMD:0.6358335;iRNA_m5C:0.000463287680048552 4038 chr5 23526506 23526506 1 + C T SKCM 23526506 + 23526486 23526526 41 CCTGCCCAGGGGATCAGAATCAGGAGCAGCAATATCCAGAT CCTGCCCAGGGGATCAGAATTAGGAGCAGCAATATCCAGAT Direct Loss 0.957868294237559 0 0.94072723 0 prediction 0.915736588475118 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23526506 chr5:23526506 stopgain 0.009 0 21 hm5C_associated_SNPs_48718 0 0 0 0 0 unknown 0.50023176174519 0 0.88145446 0.000463523490379369 hm5C_site_4038 DeepMRMD:0.88145446;iRNA_m5C:0.000463523490379369 4039 chr4 186320890 186320890 1 + G A rs144479244 186320890 - 186320870 186320910 41 ACTGGTATTTTCTACACTTCCGAGACTCCGTTTCTGTCTGA ACTGGTATTTTCTACACTTCTGAGACTCCGTTTCTGTCTGA Direct Loss 0.957856161504542 0 0.43488464 0 prediction 0.915712323009083 Functional Loss - ANKRD37 ENSG00000186352 CDS Human protein_coding chr4:186320890 chr4:186320890 nonsynonymous SNV 0.433 0 21 hm5C_associated_SNPs_48719 0 0 1 2 0 chromatin 0.500231643920984 0 0 0.000463287841967697 hm5C_site_4039 DeepMRMD:0;iRNA_m5C:0.000463287841967697 4040 chr11 27016220 27016220 1 + C T SKCM 27016220 + 27016200 27016240 41 TATGAGGAGAACGATGACCCCGAGAAGTGCCAGCTGCTCTT TATGAGGAGAACGATGACCCTGAGAAGTGCCAGCTGCTCTT Direct Loss 0.957855579579972 0 0.89135075 0 prediction 0.915711159159944 Functional Loss - FIBIN ENSG00000176971 CDS Human protein_coding chr11:27016220 chr11:27016220 synonymous SNV . 0 21 hm5C_associated_SNPs_48720 0 0 0 0 0 exosome 0.500231654997283 0 0.7827015 0.000463309994566785 hm5C_site_4040 DeepMRMD:0.7827015;iRNA_m5C:0.000463309994566785 4041 chr5 110406136 110406136 1 + C A rs191607411 110406136 + 110406116 110406156 41 GGGGTGAGGGGTGCGATGGACGGGGGAGCGGAAGGGAAAGA GGGGTGAGGGGTGCGATGGAAGGGGGAGCGGAAGGGAAAGA Direct Loss 0.95785408443606 0 0.891473 0 prediction 0.91570816887212 Functional Loss - SLC25A46;TSLP ENSG00000145777 UTR5 Human protein_coding chr5:110406136 chr5:110406136 . . 0 21 hm5C_associated_SNPs_48721 0 0 0 0 0 unknown 0.500231643921093 0 0.782946 0.000463287842185078 hm5C_site_4041 DeepMRMD:0.782946;iRNA_m5C:0.000463287842185078 4042 chr5 5303423 5303423 1 + C T CESC 5303423 + 5303403 5303443 41 GCCTGCAGTCGGACGTGTGGCGGGGGTGCCCAGAGCCGCCC GCCTGCAGTCGGACGTGTGGTGGGGGTGCCCAGAGCCGCCC Direct Loss 0.957853431240709 0 0.91225994 0 prediction 0.915706862481418 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303423 chr5:5303423 synonymous SNV . 0 21 hm5C_associated_SNPs_48722 0 0 0 0 1 exosome 0.500231659946058 0 0.82451988 0.00046331989211601 hm5C_site_4042 DeepMRMD:0.82451988;iRNA_m5C:0.00046331989211601 4043 chr5 133727424 133727424 1 + C T rs181009937 133727424 + 133727404 133727444 41 AGCACTTTGGGAGGCAAAGGCGGGAGGATCACTTGAGGCCA AGCACTTTGGGAGGCAAAGGTGGGAGGATCACTTGAGGCCA Direct Loss 0.957841624312908 0 0.93803 0 prediction 0.915683248625816 Functional Loss - UBE2B ENSG00000119048 UTR3 Human protein_coding chr5:133727424 chr5:133727424 . . 0 21 hm5C_associated_SNPs_48723 0 0 1 1 0 Cytosol 0.500231643921147 0 0.87606 0.000463287842294546 hm5C_site_4043 DeepMRMD:0.87606;iRNA_m5C:0.000463287842294546 4044 chr17 20224682 20224682 1 + C T GBM 20224682 + 20224662 20224702 41 GGCTGAGGGGTCTCCGAAGCCGGCAGTCTACGCCACGAGGA GGCTGAGGGGTCTCCGAAGCTGGCAGTCTACGCCACGAGGA Direct Loss 0.957839996259692 0 0.91533864 0 prediction 0.915679992519385 Functional Loss - CCDC144CP ENSG00000154898 ncRNA_exonic Human transcribed_processed_pseudogene chr17:20224682 chr17:20224682 . . 0 21 hm5C_associated_SNPs_48724 0 0 0 0 0 unknown 0.500231643921239 0 0.83067728 0.000463287842477955 hm5C_site_4044 DeepMRMD:0.83067728;iRNA_m5C:0.000463287842477955 4045 chr3 44906624 44906624 1 + C T UCEC 44906624 + 44906604 44906644 41 TGCGGACTCACCCTAATCCACAGGAAGCTCCCACCCACCTG TGCGGACTCACCCTAATCCATAGGAAGCTCCCACCCACCTG Direct Loss 0.957837825345585 0 0.2823915 0 prediction 0.91567565069117 Functional Loss - TMEM42 ENSG00000169964 CDS Human protein_coding chr3:44906624 chr3:44906624 synonymous SNV . 0 21 hm5C_associated_SNPs_48725 0 0 1 0 1 exosome 0.500231643921087 0 0 0.000463287842173532 hm5C_site_4045 DeepMRMD:0;iRNA_m5C:0.000463287842173532 4046 chr3 127396598 127396598 1 + C T CESC 127396598 + 127396578 127396618 41 GAGCGAGGAGCCAGCGACCTCAGGGGGCCCCCCAGCCGTCA GAGCGAGGAGCCAGCGACCTTAGGGGGCCCCCCAGCCGTCA Direct Loss 0.957835828936571 0 0.94104683 0 prediction 0.915671657873143 Functional Loss - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396598 chr3:127396598 nonsynonymous SNV 0.029 0 21 hm5C_associated_SNPs_48726 0 0 0 0 2 exosome 0.500231643921146 0 0.88209366 0.000463287842291216 hm5C_site_4046 DeepMRMD:0.88209366;iRNA_m5C:0.000463287842291216 4047 chr13 31506870 31506870 1 + C A LUAD 31506870 + 31506850 31506890 41 AGAATGGAACAGCCTGGGCCCAGGGCTCCGGATCCCTCTCT AGAATGGAACAGCCTGGGCCAAGGGCTCCGGATCCCTCTCT Direct Loss 0.957823719050199 0 0.90836316 0 prediction 0.915647438100399 Functional Loss - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31506870 chr13:31506870 synonymous SNV . 0 21 hm5C_associated_SNPs_48727 0 0 0 0 1 exosome 0.500231643921094 0 0.81672632 0.000463287842188853 hm5C_site_4047 DeepMRMD:0.81672632;iRNA_m5C:0.000463287842188853 4048 chr22 41783378 41783378 1 + C G LUSC 41783378 + 41783358 41783398 41 AGGAAAAGGGGAAGGAAAAGCTGGAGGAGGACGAGGCCGCA AGGAAAAGGGGAAGGAAAAGGTGGAGGAGGACGAGGCCGCA Direct Loss 0.957810934902459 0 0.45964748 0 prediction 0.915621869804918 Functional Loss - TEF ENSG00000167074 CDS Human protein_coding chr22:41783378 chr22:41783378 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_48728 0 0 0 0 2 cytosol 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4048 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4049 chr14 20344870 20344870 1 + C A HNSC 20344870 + 20344850 20344890 41 GTTGCTCTCGTGGTGGCTTCCTGGATTATGGGAGTTATGCA GTTGCTCTCGTGGTGGCTTCATGGATTATGGGAGTTATGCA Direct Loss 0.957805871612018 0 0.3694892 0 prediction 0.915611743224037 Functional Loss - OR4K2 ENSG00000165762 CDS Human protein_coding chr14:20344870 chr14:20344870 synonymous SNV . 0 21 hm5C_associated_SNPs_48729 0 0 0 0 0 unknown 0.500231641793642 0 0 0.000463283587284868 hm5C_site_4049 DeepMRMD:0;iRNA_m5C:0.000463283587284868 4050 chr11 1857719 1857719 1 + C T SKCM 1857719 + 1857699 1857739 41 TTTCAACTTCAAGCGCTTCTCGGGGCATGAGCCCCTGGGTG TTTCAACTTCAAGCGCTTCTTGGGGCATGAGCCCCTGGGTG Direct Loss 0.957777470928918 0 0.9607042 0 prediction 0.915554941857836 Functional Loss - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1857719 chr11:1857719 nonsynonymous SNV 0.011 1 21 hm5C_associated_SNPs_48730 0 0 0 0 1 exosome 0.500231643917167 0 0.9214084 0.000463287834333359 hm5C_site_4050 DeepMRMD:0.9214084;iRNA_m5C:0.000463287834333359 4051 chr11 13984492 13984492 1 + C A rs143217870 13984492 + 13984472 13984512 41 CCTGAAGCTGAGCCGGACTCCGGCACTGCTGGCCCTGGCGC CCTGAAGCTGAGCCGGACTCAGGCACTGCTGGCCCTGGCGC Direct Loss 0.957773117530493 0 0.63154936 0 prediction 0.915546235060986 Functional Loss - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:13984492 chr11:13984492 . 0.298 0 21 hm5C_associated_SNPs_48731 0 0 0 0 0 chromatin 0.500231643921092 0 0.26309872 0.000463287842184856 hm5C_site_4051 DeepMRMD:0.26309872;iRNA_m5C:0.000463287842184856 4052 chr11 36250800 36250800 1 + C T UCEC 36250800 + 36250780 36250820 41 CCCCCCTACCGCTCCCGGTCCGGGAGTGCCAACAGTGCCAG CCCCCCTACCGCTCCCGGTCTGGGAGTGCCAACAGTGCCAG Direct Loss 0.957748002053269 0 0.78275836 0 prediction 0.915496004106538 Functional Loss - LDLRAD3 ENSG00000179241 CDS Human protein_coding chr11:36250800 chr11:36250800 synonymous SNV . 0 21 hm5C_associated_SNPs_48732 0 0 0 0 1 Nucleus 0.500231643922132 0 0.56551672 0.000463287844264082 hm5C_site_4052 DeepMRMD:0.56551672;iRNA_m5C:0.000463287844264082 4053 chr11 63990865 63990865 1 + C G rs142025489 63990865 + 63990845 63990885 41 CGAATTGTACACGAGTATATCGGGGGCTACATTTTCCTGTC CGAATTGTACACGAGTATATGGGGGGCTACATTTTCCTGTC Direct Loss 0.957745694809832 0 0.96332836 0 prediction 0.915491389619664 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63990865 chr11:63990865 nonsynonymous SNV 0.904 5 21 hm5C_associated_SNPs_48733 0 0 0 0 1 Cytosol 0.500231643921093 0 0.92665672 0.000463287842185078 hm5C_site_4053 DeepMRMD:0.92665672;iRNA_m5C:0.000463287842185078 4054 chr12 58001106 58001106 1 + C T UCEC 58001106 + 58001086 58001126 41 CACCTCTTCCTCCTCGCCTTCGGGAGGAGGCAGAAGAGCAG CACCTCTTCCTCCTCGCCTTTGGGAGGAGGCAGAAGAGCAG Direct Loss 0.957744572291109 0 0.917422 0 prediction 0.915489144582218 Functional Loss - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58001106 chr12:58001106 nonsynonymous SNV 0.987 2 21 hm5C_associated_SNPs_48734 0 0 0 0 0 exosome 0.500231643921092 0 0.834844 0.000463287842184634 hm5C_site_4054 DeepMRMD:0.834844;iRNA_m5C:0.000463287842184634 4055 chr12 9720311 9720311 1 + C T rs565073979 9720311 + 9720291 9720331 41 GGCTCTCAGTCCCCGCCTCGCGGGGGGTGCCTCCCCCCTCT GGCTCTCAGTCCCCGCCTCGTGGGGGGTGCCTCCCCCCTCT Direct Loss 0.957736335949134 0 0.96240604 0 prediction 0.915472671898268 Functional Loss - DDX12P;KLRB1 ENSG00000214776 ncRNA_exonic Human protein_coding chr12:9720311 chr12:9720311 . . 0 21 hm5C_associated_SNPs_48735 0 0 0 0 0 unknown 0.500231643921092 0 0.92481208 0.000463287842184856 hm5C_site_4055 DeepMRMD:0.92481208;iRNA_m5C:0.000463287842184856 4056 chr20 37555035 37555035 1 + C A LUSC 37555035 + 37555015 37555055 41 TTCAAAGGTTGCCTATAAAGCGGGACTGCACGCCGGTTTTT TTCAAAGGTTGCCTATAAAGAGGGACTGCACGCCGGTTTTT Direct Loss 0.957720457330268 0 0.91497695 0 prediction 0.915440914660537 Functional Loss - FAM83D ENSG00000101447 CDS Human protein_coding chr20:37555035 chr20:37555035 synonymous SNV . 0 21 hm5C_associated_SNPs_48736 0 0 0 0 0 Ribosome 0.500231648264795 0 0.8299539 0.00046329652958943 hm5C_site_4056 DeepMRMD:0.8299539;iRNA_m5C:0.00046329652958943 4057 chrX 100880257 100880257 1 + C A ACC 100880257 + 100880237 100880277 41 GCTAGGGCCAGGGCAAGGGCCAGGGCTACCCGGGCACGTCG GCTAGGGCCAGGGCAAGGGCAAGGGCTACCCGGGCACGTCG Direct Loss 0.957703598422672 0 0.9133131 0 prediction 0.915407196845344 Functional Loss - ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880257 chrX:100880257 synonymous SNV . 0 21 hm5C_associated_SNPs_48737 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8266262 0.000463287842184856 hm5C_site_4057 DeepMRMD:0.8266262;iRNA_m5C:0.000463287842184856 4058 chr12 56863068 56863068 1 + C T rs117958275 56863068 + 56863048 56863088 41 TGGCAGATGTGGACATGTCCCGGGATAGCTGCATTGGTGTT TGGCAGATGTGGACATGTCCTGGGATAGCTGCATTGGTGTT Direct Loss 0.957694428456829 0 0.8305094 0 prediction 0.915388856913657 Functional Loss - SPRYD4 ENSG00000176422 CDS Human protein_coding chr12:56863068 chr12:56863068 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_48738 0 0 1 0 1 Cytosol 0.50023164391958 0 0.6610188 0.000463287839159499 hm5C_site_4058 DeepMRMD:0.6610188;iRNA_m5C:0.000463287839159499 4059 chr17 40996995 40996995 1 + C T ESCA 40996995 + 40996975 40997015 41 GGGGGAGCCCCCCACCTGCCCGGGAGGCACTGGCCATCGTC GGGGGAGCCCCCCACCTGCCTGGGAGGCACTGGCCATCGTC Direct Loss 0.957683995230102 0 0.921579 0 prediction 0.915367990460204 Functional Loss - AOC2 ENSG00000131480 CDS Human protein_coding chr17:40996995 chr17:40996995 nonsynonymous SNV 0.876 4 21 hm5C_associated_SNPs_48739 0 0 0 0 0 exosome 0.500231674571978 0 0.843158 0.000463349143956737 hm5C_site_4059 DeepMRMD:0.843158;iRNA_m5C:0.000463349143956737 4060 chr16 2871396 2871396 1 + C G UCEC 2871396 + 2871376 2871416 41 GGTGGACCCTTGGCCTGTAACAAGAATGGACTGTGGTATCA GGTGGACCCTTGGCCTGTAAGAAGAATGGACTGTGGTATCA Direct Loss 0.95767381810142 0 0.8244866 0 prediction 0.91534763620284 Functional Loss - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2871396 chr16:2871396 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48740 0 0 1 0 0 chromatin 0.500231643937104 0 0.6489732 0.000463287874207463 hm5C_site_4060 DeepMRMD:0.6489732;iRNA_m5C:0.000463287874207463 4061 chr19 39215092 39215092 1 + C T HNSC 39215092 + 39215072 39215112 41 TGCAGCAGCTGGTGCCAAAACGGGACCATGCCCTCCTGGAG TGCAGCAGCTGGTGCCAAAATGGGACCATGCCCTCCTGGAG Direct Loss 0.957658884889474 0 0.90992206 0 prediction 0.915317769778947 Functional Loss - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215092 chr19:39215092 nonsynonymous SNV 0.978 4 21 hm5C_associated_SNPs_48741 0 0 1 0 1 Nucleus 0.500231643921092 0 0.81984412 0.000463287842184856 hm5C_site_4061 DeepMRMD:0.81984412;iRNA_m5C:0.000463287842184856 4062 chr5 6449328 6449328 1 + C T COAD 6449328 + 6449308 6449348 41 ACACCGTGGAGGCCGTCATGCGCCAGTTCGCAGCCAGCCTG ACACCGTGGAGGCCGTCATGTGCCAGTTCGCAGCCAGCCTG Direct Loss 0.957656628770365 0 0.13549328 0 prediction 0.915313257540729 Functional Loss - UBE2QL1 ENSG00000215218 CDS Human protein_coding chr5:6449328 chr5:6449328 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48742 0 0 0 0 1 exosome 0.500223035059226 0 0 0.000446070118451436 hm5C_site_4062 DeepMRMD:0;iRNA_m5C:0.000446070118451436 4063 chr19 50961953 50961953 1 + C G CESC 50961953 + 50961933 50961973 41 CGAGTAGTTGGGGTCAACATCGCGGGGCGCAGCGAGCCGGC CGAGTAGTTGGGGTCAACATGGCGGGGCGCAGCGAGCCGGC Direct Loss 0.957652286613578 0 0.9366548 0 prediction 0.915304573227157 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50961953 chr19:50961953 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_48743 0 0 0 0 1 exosome 0.500229720111169 0 0.8733096 0.000459440222337681 hm5C_site_4063 DeepMRMD:0.8733096;iRNA_m5C:0.000459440222337681 4064 chr2 220098090 220098090 1 + C T COAD 220098090 + 220098070 220098110 41 CCCAGGGGCTTCGGGATGCCCGAGGTGGGCCATCACACTCT CCCAGGGGCTTCGGGATGCCTGAGGTGGGCCATCACACTCT Direct Loss 0.957647515428477 0 0.8912562 0 prediction 0.915295030856953 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220098090 chr2:220098090 stopgain 0.646 1 21 hm5C_associated_SNPs_48744 0 0 1 0 2 chromatin 0.500231688682049 0 0.7825124 0.000463377364098738 hm5C_site_4064 DeepMRMD:0.7825124;iRNA_m5C:0.000463377364098738 4065 chr20 43514380 43514380 1 + C G rs139992012 43514380 + 43514360 43514400 41 CGCCACCGCCGCCGCCGATTCCGGAGCCGGGGTAGTCGCCG CGCCACCGCCGCCGCCGATTGCGGAGCCGGGGTAGTCGCCG Direct Loss 0.957646705593368 0 0.9257288 0 prediction 0.915293411186735 Functional Loss - YWHAB ENSG00000166913 UTR5 Human protein_coding chr20:43514380 chr20:43514380 . . 0 21 hm5C_associated_SNPs_48745 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8514576 0.000463287842184856 hm5C_site_4065 DeepMRMD:0.8514576;iRNA_m5C:0.000463287842184856 4066 chr11 1973375 1973375 1 + C T BLCA 1973375 + 1973355 1973395 41 AGAATGACAAGGGTGGACCTCAGGAATTACCTCGAGGGCAT AGAATGACAAGGGTGGACCTTAGGAATTACCTCGAGGGCAT Direct Loss 0.957642863190945 0 0.4510627 0 prediction 0.91528572638189 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1973375 chr11:1973375 synonymous SNV . 0 21 hm5C_associated_SNPs_48746 0 0 1 0 2 Ribosome 0.500231718223532 0 0 0.000463436447064369 hm5C_site_4066 DeepMRMD:0;iRNA_m5C:0.000463436447064369 4067 chr12 121837909 121837909 1 + C G rs560471513 121837909 + 121837889 121837929 41 TCCGGACGCTCGGTCGCCTCCCGGGGCGCGGTAATCACCGC TCCGGACGCTCGGTCGCCTCGCGGGGCGCGGTAATCACCGC Direct Loss 0.95763753511656 0 0.9240333 0 prediction 0.915275070233121 Functional Loss - RNF34 ENSG00000170633 UTR5 Human protein_coding chr12:121837909 chr12:121837909 . . 0 21 hm5C_associated_SNPs_48747 0 0 0 0 0 chromatin 0.500231594581018 0 0.8480666 0.000463189162035027 hm5C_site_4067 DeepMRMD:0.8480666;iRNA_m5C:0.000463189162035027 4068 chr15 99671776 99671776 1 + C T rs567669558 99671776 + 99671756 99671796 41 GCTTTAGGCGTTGGGCCACCCGGGAGCTGTACATCCCTTCA GCTTTAGGCGTTGGGCCACCTGGGAGCTGTACATCCCTTCA Direct Loss 0.957633832186026 0 0.909722 0 prediction 0.915267664372052 Functional Loss - SYNM ENSG00000182253 CDS Human protein_coding chr15:99671776 chr15:99671776 nonsynonymous SNV 0.919 2 21 hm5C_associated_SNPs_48748 0 0 1 0 0 exosome 0.500231643921092 0 0.819444 0.000463287842184856 hm5C_site_4068 DeepMRMD:0.819444;iRNA_m5C:0.000463287842184856 4069 chr19 45851959 45851959 1 + C T UCEC 45851959 + 45851939 45851979 41 TCCATGATGCCCTGCAGATCCGGGAGCAGACGCTGGGCCCT TCCATGATGCCCTGCAGATCTGGGAGCAGACGCTGGGCCCT Direct Loss 0.957631605154157 0 0.9304091 0 prediction 0.915263210308314 Functional Loss - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851959 chr19:45851959 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_48749 0 0 0 0 2 nucleolus 0.500231637930135 0 0.8608182 0.000463275860270285 hm5C_site_4069 DeepMRMD:0.8608182;iRNA_m5C:0.000463275860270285 4070 chr17 28706195 28706195 1 + C T COAD 28706195 + 28706175 28706215 41 CCACGAAGAGGAGTTGGAGTCGGCGCTGAGGGAGGCGGCGG CCACGAAGAGGAGTTGGAGTTGGCGCTGAGGGAGGCGGCGG Direct Loss 0.95762549740055 0 0.9210558 0 prediction 0.915250994801101 Functional Loss - CPD ENSG00000108582 CDS Human protein_coding chr17:28706195 chr17:28706195 nonsynonymous SNV 0.562 0 21 hm5C_associated_SNPs_48750 0 0 1 0 0 Nucleus 0.500231643927235 0 0.8421116 0.00046328785447014 hm5C_site_4070 DeepMRMD:0.8421116;iRNA_m5C:0.00046328785447014 4071 chr9 125563287 125563287 1 + C A LUAD 125563287 + 125563267 125563307 41 TCATCTACAGCCTCTGGAATCGCGATGTACAGGGGGCACTC TCATCTACAGCCTCTGGAATAGCGATGTACAGGGGGCACTC Direct Loss 0.957624985869238 0 0.92601085 0 prediction 0.915249971738476 Functional Loss - OR1K1 ENSG00000165204 CDS Human protein_coding chr9:125563287 chr9:125563287 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48751 0 0 0 0 0 unknown 0.500231643671849 0 0.8520217 0.000463287343698937 hm5C_site_4071 DeepMRMD:0.8520217;iRNA_m5C:0.000463287343698937 4072 chr15 29034198 29034198 1 + C T rs192864602 29034198 + 29034178 29034218 41 GGGGGTCGGGGCGCATTTGCCAGGGGACATCTGGAGCCCGG GGGGGTCGGGGCGCATTTGCTAGGGGACATCTGGAGCCCGG Direct Loss 0.957611916191972 0 0.96054363 0 prediction 0.915223832383943 Functional Loss - LOC100289656 ENSG00000232431 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:29034198 chr15:29034198 . . 0 21 hm5C_associated_SNPs_48752 0 0 0 0 0 unknown 0.500231643921201 0 0.92108726 0.000463287842402016 hm5C_site_4072 DeepMRMD:0.92108726;iRNA_m5C:0.000463287842402016 4073 chr6 106554930 106554930 1 + C A LUSC 106554930 + 106554910 106554950 41 TGCACAAGCGTCTGCACACCCGGGAGCGGCCCCACAAGTGC TGCACAAGCGTCTGCACACCAGGGAGCGGCCCCACAAGTGC Direct Loss 0.957605022311076 0 0.88118315 0 prediction 0.915210044622152 Functional Loss - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106554930 chr6:106554930 synonymous SNV . 0 21 hm5C_associated_SNPs_48753 0 0 0 0 0 cytosol 0.500231702884109 0 0.7623663 0.000463405768218461 hm5C_site_4073 DeepMRMD:0.7623663;iRNA_m5C:0.000463405768218461 4074 chr1 45271330 45271330 1 + C T UCEC 45271330 + 45271310 45271350 41 GCTATGCTCTGCGCCTGCTCCGGGACCGCAGCCCAGCCTAG GCTATGCTCTGCGCCTGCTCTGGGACCGCAGCCCAGCCTAG Direct Loss 0.957595130432669 0 0.91834414 0 prediction 0.915190260865338 Functional Loss - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45271330 chr1:45271330 nonsynonymous SNV 0.928 2 21 hm5C_associated_SNPs_48754 0 0 0 0 0 Cytosol 0.500231644002547 0 0.83668828 0.000463288005094764 hm5C_site_4074 DeepMRMD:0.83668828;iRNA_m5C:0.000463288005094764 4075 chr2 96933066 96933066 1 + C T UCEC 96933066 + 96933046 96933086 41 GCTCCGCCTTTAGGTGACAGCTGGATCTGCAAGTCTGTCCT GCTCCGCCTTTAGGTGACAGTTGGATCTGCAAGTCTGTCCT Direct Loss 0.957588419431266 0 0.59647006 0 prediction 0.915176838862532 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933066 chr2:96933066 synonymous SNV . 0 21 hm5C_associated_SNPs_48755 0 0 1 0 1 Ribosome 0.500231643921087 0 0.19294012 0.000463287842173754 hm5C_site_4075 DeepMRMD:0.19294012;iRNA_m5C:0.000463287842173754 4076 chr20 36500368 36500368 1 + C T STAD 36500368 + 36500348 36500388 41 ACGGCCGGAGCCCGGAGTTCCGGGAGAACGAGCAAAAGCGC ACGGCCGGAGCCCGGAGTTCTGGGAGAACGAGCAAAAGCGC Direct Loss 0.957577691198604 0 0.9196942 0 prediction 0.915155382397209 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36500368 chr20:36500368 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48756 0 0 1 0 0 Cytosol 0.500231643921099 0 0.8393884 0.000463287842198401 hm5C_site_4076 DeepMRMD:0.8393884;iRNA_m5C:0.000463287842198401 4077 chr20 17550613 17550613 1 + C G rs560313690 17550613 + 17550593 17550633 41 AGATGAGGGAAGCTCCCCTCCGAGACTCTGGATAGCCGCCG AGATGAGGGAAGCTCCCCTCGGAGACTCTGGATAGCCGCCG Direct Loss 0.95756716610585 0 0.82678705 0 prediction 0.9151343322117 Functional Loss - DSTN ENSG00000125868 UTR5 Human protein_coding chr20:17550613 chr20:17550613 . . 0 21 hm5C_associated_SNPs_48757 0 0 1 0 0 Ribosome 0.500231643921093 0 0.6535741 0.000463287842185078 hm5C_site_4077 DeepMRMD:0.6535741;iRNA_m5C:0.000463287842185078 4078 chr13 96743244 96743244 1 + C T COAD 96743244 + 96743224 96743264 41 CTTCGGGGAGCAGCCCCGCGCGGGGGAGGCCGGCCCGCCCG CTTCGGGGAGCAGCCCCGCGTGGGGGAGGCCGGCCCGCCCG Direct Loss 0.957559865669687 0 0.9386586 0 prediction 0.915119731339373 Functional Loss - HS6ST3 ENSG00000185352 CDS Human protein_coding chr13:96743244 chr13:96743244 nonsynonymous SNV 0.983 2 21 hm5C_associated_SNPs_48758 0 0 0 0 0 exosome 0.50023164392119 0 0.8773172 0.000463287842380034 hm5C_site_4078 DeepMRMD:0.8773172;iRNA_m5C:0.000463287842380034 4079 chr1 173455477 173455477 1 + C T BLCA 173455477 + 173455457 173455497 41 AGGAACTTTGATGAGATTCTCAGGGTAGTCATCTCTCTCCA AGGAACTTTGATGAGATTCTTAGGGTAGTCATCTCTCTCCA Direct Loss 0.957556036318795 0 0.93605226 0 prediction 0.915112072637589 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173455477 chr1:173455477 synonymous SNV . 0 21 hm5C_associated_SNPs_48759 0 0 1 0 2 Ribosome 0.500231643756703 0 0.87210452 0.00046328751340674 hm5C_site_4079 DeepMRMD:0.87210452;iRNA_m5C:0.00046328751340674 4080 chr2 176972320 176972320 1 + C A LUAD 176972320 + 176972300 176972340 41 TGGCCGTACCGCGGCGGCGGCGGCGGCGGCAGCGCGGGGGG TGGCCGTACCGCGGCGGCGGAGGCGGCGGCAGCGCGGGGGG Direct Loss 0.957546935831585 0 0.8917809 0 prediction 0.915093871663169 Functional Loss - HOXD11 ENSG00000128713 CDS Human protein_coding chr2:176972320 chr2:176972320 synonymous SNV . 0 21 hm5C_associated_SNPs_48760 0 0 0 0 0 exosome 0.500231643413303 0 0.7835618 0.000463286826606346 hm5C_site_4080 DeepMRMD:0.7835618;iRNA_m5C:0.000463286826606346 4081 chr8 24256516 24256516 1 + C T SKCM 24256516 + 24256496 24256536 41 TGAGATGGCACAGTTCTAACCTGGGGAAAAAGATCCACGAC TGAGATGGCACAGTTCTAACTTGGGGAAAAAGATCCACGAC Direct Loss 0.957544916076506 0 0.7460475 0 prediction 0.915089832153012 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256516 chr8:24256516 synonymous SNV . 0 21 hm5C_associated_SNPs_48761 0 0 0 0 1 exosome 0.500224868519099 0 0.492095 0.000449737038197728 hm5C_site_4081 DeepMRMD:0.492095;iRNA_m5C:0.000449737038197728 4082 chr1 197887022 197887022 1 + C T PCPG 197887022 + 197887002 197887042 41 CCCCCAGCCATGCTCTTTCACGGGATCTCCGGAGGCCACAT CCCCCAGCCATGCTCTTTCATGGGATCTCCGGAGGCCACAT Direct Loss 0.957542643556443 0 0.9143644 0 prediction 0.915085287112885 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197887022 chr1:197887022 synonymous SNV . 0 21 hm5C_associated_SNPs_48762 0 0 0 1 1 exosome 0.500231643921091 0 0.8287288 0.000463287842182636 hm5C_site_4082 DeepMRMD:0.8287288;iRNA_m5C:0.000463287842182636 4083 chr2 234243696 234243696 1 + C T SKCM 234243696 + 234243676 234243716 41 GAGAAAGGAGAGGCATTGCCCTGGATGGGAAAATCAAGCAC GAGAAAGGAGAGGCATTGCCTTGGATGGGAAAATCAAGCAC Direct Loss 0.957534226380319 0 0.12375894 0 prediction 0.915068452760638 Functional Loss - SAG ENSG00000130561 CDS Human protein_coding chr2:234243696 chr2:234243696 synonymous SNV . 0 21 hm5C_associated_SNPs_48763 0 0 0 0 2 Endoplasmic reticulum 0.500231643921093 0 0 0.000463287842186411 hm5C_site_4083 DeepMRMD:0;iRNA_m5C:0.000463287842186411 4084 chrX 140994898 140994898 1 + C T CESC 140994898 + 140994878 140994918 41 ACTTTCCTCAGAGCCCTCCTCAGGGGGAGGACTCCCTGTCT ACTTTCCTCAGAGCCCTCCTTAGGGGGAGGACTCCCTGTCT Direct Loss 0.957529368431461 0 0.9517319 0 prediction 0.915058736862921 Functional Loss - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140994898 chrX:140994898 stopgain 0.002 0 21 hm5C_associated_SNPs_48764 0 0 0 0 0 exosome 0.500231654070741 0 0.9034638 0.000463308141482877 hm5C_site_4084 DeepMRMD:0.9034638;iRNA_m5C:0.000463308141482877 4085 chr20 31763324 31763324 1 + C T UCEC 31763324 + 31763304 31763344 41 GTTGCCGTCCTGGGAGAATGCGCCAGTGACCCAACCAGCAT GTTGCCGTCCTGGGAGAATGTGCCAGTGACCCAACCAGCAT Direct Loss 0.957523012859743 0 0.34764335 0 prediction 0.915046025719487 Functional Loss - BPIFA2 ENSG00000131050 CDS Human protein_coding chr20:31763324 chr20:31763324 synonymous SNV . 0 21 hm5C_associated_SNPs_48765 0 0 0 0 1 exosome 0.500231643920837 0 0 0.00046328784167371 hm5C_site_4085 DeepMRMD:0;iRNA_m5C:0.00046328784167371 4086 chr8 8560124 8560124 1 + C T COAD 8560124 + 8560104 8560144 41 ACGGACCAGTGGGGCTACTTCGAGGCCCAGCCCGTGCTGGT ACGGACCAGTGGGGCTACTTTGAGGCCCAGCCCGTGCTGGT Direct Loss 0.957513904114085 0 0.92575336 0 prediction 0.915027808228169 Functional Loss - CLDN23 ENSG00000253958 CDS Human protein_coding chr8:8560124 chr8:8560124 synonymous SNV . 0 21 hm5C_associated_SNPs_48766 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.85150672 0.000463287842184856 hm5C_site_4086 DeepMRMD:0.85150672;iRNA_m5C:0.000463287842184856 4087 chr19 4422713 4422713 1 + C T COAD 4422713 + 4422693 4422733 41 AAAAGGAGAGGCGGGAGAAGCGGGAGAAGGATGAGAAGGAG AAAAGGAGAGGCGGGAGAAGTGGGAGAAGGATGAGAAGGAG Direct Loss 0.957498644985486 0 0.8969395 0 prediction 0.914997289970971 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4422713 chr19:4422713 nonsynonymous SNV 0.963 3 21 hm5C_associated_SNPs_48767 0 0 1 0 1 Nucleus 0.500231643921092 0 0.793879 0.000463287842184856 hm5C_site_4087 DeepMRMD:0.793879;iRNA_m5C:0.000463287842184856 4088 chr14 76013025 76013025 1 + C T rs201256366 76013025 + 76013005 76013045 41 CCAGCCCTGAGCTTCCGATGCGGGGAGAGCAGAGCCTCGGG CCAGCCCTGAGCTTCCGATGTGGGGAGAGCAGAGCCTCGGG Direct Loss 0.957498159075695 0 0.9169612 0 prediction 0.91499631815139 Functional Loss - BATF ENSG00000156127 UTR3 Human protein_coding chr14:76013025 chr14:76013025 . . 0 21 hm5C_associated_SNPs_48768 0 0 0 0 0 exosome 0.500231643921092 0 0.8339224 0.000463287842184856 hm5C_site_4088 DeepMRMD:0.8339224;iRNA_m5C:0.000463287842184856 4089 chr4 151504776 151504776 1 + C T CESC 151504776 + 151504756 151504796 41 TCCCTTGGCCCGGCCCCAATCGGGTGGCCGAGGTCAAGGCC TCCCTTGGCCCGGCCCCAATTGGGTGGCCGAGGTCAAGGCC Direct Loss 0.957482351928775 0 0.9577992 0 prediction 0.914964703857551 Functional Loss - MAB21L2 ENSG00000181541 CDS Human protein_coding chr4:151504776 chr4:151504776 nonsynonymous SNV 0.981 3 21 hm5C_associated_SNPs_48769 0 0 0 0 0 nucleus 0.500231643921088 0 0.9155984 0.000463287842175752 hm5C_site_4089 DeepMRMD:0.9155984;iRNA_m5C:0.000463287842175752 4090 chr11 6891831 6891831 1 + C T rs149178905 6891831 + 6891811 6891851 41 ATCTACAGCCTGAGAAATAACGAGGTGAAGAATGCCCTCAG ATCTACAGCCTGAGAAATAATGAGGTGAAGAATGCCCTCAG Direct Loss 0.957482104709359 0 0.9397906 0 prediction 0.914964209418717 Functional Loss - OR10A2 ENSG00000170790 CDS Human protein_coding chr11:6891831 chr11:6891831 synonymous SNV . 0 21 hm5C_associated_SNPs_48770 0 0 0 0 0 unknown 0.500231643921092 0 0.8795812 0.000463287842184856 hm5C_site_4090 DeepMRMD:0.8795812;iRNA_m5C:0.000463287842184856 4091 chr10 135051581 135051581 1 + C A LUAD 135051581 + 135051561 135051601 41 CAGGCCAGACATCCGGCGCCCGGGAGCCCCCTCAGGCCGTC CAGGCCAGACATCCGGCGCCAGGGAGCCCCCTCAGGCCGTC Direct Loss 0.957471830177406 0 0.8495214 0 prediction 0.914943660354811 Functional Loss - VENTX ENSG00000151650 CDS Human protein_coding chr10:135051581 chr10:135051581 synonymous SNV . 0 21 hm5C_associated_SNPs_48771 0 0 0 0 1 Nucleus 0.500231643921092 0 0.6990428 0.000463287842184856 hm5C_site_4091 DeepMRMD:0.6990428;iRNA_m5C:0.000463287842184856 4092 chr10 122334704 122334704 1 + C T UCEC 122334704 + 122334684 122334724 41 GGCAAGCTGCACTGCTTCACCGAGAGTGGGCGGGGAAAGAG GGCAAGCTGCACTGCTTCACTGAGAGTGGGCGGGGAAAGAG Direct Loss 0.957462031389961 0 0.8437458 0 prediction 0.914924062779921 Functional Loss - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122334704 chr10:122334704 synonymous SNV . 0 21 hm5C_associated_SNPs_48772 0 0 0 0 1 Cytosol 0.500231643921103 0 0.6874916 0.000463287842205728 hm5C_site_4092 DeepMRMD:0.6874916;iRNA_m5C:0.000463287842205728 4093 chr9 99227685 99227685 1 + C T rs34274515 99227685 + 99227665 99227705 41 GGCCCGAGAGGGGGTATGCGCGGCAGAGGCAGAGGTGGCCC GGCCCGAGAGGGGGTATGCGTGGCAGAGGCAGAGGTGGCCC Direct Loss 0.957454866084419 0 0.8951394 0 prediction 0.914909732168837 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99227685 chr9:99227685 synonymous SNV . 0 21 hm5C_associated_SNPs_48773 0 0 1 0 2 chromatin 0.500231643921101 0 0.7902788 0.000463287842201732 hm5C_site_4093 DeepMRMD:0.7902788;iRNA_m5C:0.000463287842201732 4094 chr4 1801486 1801486 1 + C T HNSC 1801486 + 1801466 1801506 41 CCTTGCAGACGCTCCATCCTCGGGAGATGACGAAGACGGGG CCTTGCAGACGCTCCATCCTTGGGAGATGACGAAGACGGGG Direct Loss 0.957435226712887 0 0.93405694 0 prediction 0.914870453425773 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1801486 chr4:1801486 nonsynonymous SNV 0.818 4 21 hm5C_associated_SNPs_48774 0 0 1 0 2 Ribosome 0.500231471711441 0 0.86811388 0.000462943422881112 hm5C_site_4094 DeepMRMD:0.86811388;iRNA_m5C:0.000462943422881112 4095 chr4 184366145 184366145 1 + C T rs11539203 184366145 + 184366125 184366165 41 GAAGCTGCCGACGCCGAGAGCGGGACCCGAAACCGGCAGCT GAAGCTGCCGACGCCGAGAGTGGGACCCGAAACCGGCAGCT Direct Loss 0.957430152010645 0 0.937333 0 prediction 0.91486030402129 Functional Loss - CDKN2AIP ENSG00000168564 CDS Human protein_coding chr4:184366145 chr4:184366145 synonymous SNV . 0 21 hm5C_associated_SNPs_48775 0 0 0 0 1 Cytosol 0.500231643921107 0 0.874666 0.0004632878422135 hm5C_site_4095 DeepMRMD:0.874666;iRNA_m5C:0.0004632878422135 4096 chr5 3596413 3596413 1 + C T STAD 3596413 + 3596393 3596433 41 CTCGGTGCTGGGCATGTACGCGGCGGCGGGGCCGTACGCGG CTCGGTGCTGGGCATGTACGTGGCGGCGGGGCCGTACGCGG Direct Loss 0.957429361614692 0 0.9173899 0 prediction 0.914858723229385 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3596413 chr5:3596413 nonsynonymous SNV 0.982 1 21 hm5C_associated_SNPs_48776 0 0 0 0 1 exosome 0.500231643921098 0 0.8347798 0.000463287842195959 hm5C_site_4096 DeepMRMD:0.8347798;iRNA_m5C:0.000463287842195959 4097 chr20 43561765 43561765 1 + C T BLCA 43561765 + 43561745 43561785 41 CGGCGCCCCCCGGCCCACATCAGCAGTGTCAGGCAGGCCTC CGGCGCCCCCCGGCCCACATTAGCAGTGTCAGGCAGGCCTC Direct Loss 0.957429023197428 0 0.91937625 0 prediction 0.914858046394857 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43561765 chr20:43561765 synonymous SNV . 0 21 hm5C_associated_SNPs_48777 0 0 1 0 3 chromatin 0.500231643921123 0 0.8387525 0.00046328784224503 hm5C_site_4097 DeepMRMD:0.8387525;iRNA_m5C:0.00046328784224503 4098 chr4 187209614 187209614 1 + C T BLCA 187209614 + 187209594 187209634 41 CCCCTCGTTCTAGGGAGATTCGGGAGGCCCTCTGTCCTGCA CCCCTCGTTCTAGGGAGATTTGGGAGGCCCTCTGTCCTGCA Direct Loss 0.95742615680314 0 0.9196402 0 prediction 0.91485231360628 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187209614 chr4:187209614 nonsynonymous SNV 0.229 5 21 hm5C_associated_SNPs_48778 2 0 1 0 1 cytosol 0.500231643921092 0 0.8392804 0.000463287842184856 hm5C_site_4098 DeepMRMD:0.8392804;iRNA_m5C:0.000463287842184856 not provided not provided 4099 chr6 41621387 41621387 1 + C T rs74973041 41621387 + 41621367 41621407 41 CCTCTGAGTGGGGCCAGGCCCAGGACTGTCACACAAGGCTT CCTCTGAGTGGGGCCAGGCCTAGGACTGTCACACAAGGCTT Direct Loss 0.957403636978271 0 0.76495624 0 prediction 0.914807273956542 Functional Loss - MDFI ENSG00000112559 UTR3 Human protein_coding chr6:41621387 chr6:41621387 . . 0 21 hm5C_associated_SNPs_48779 0 0 0 1 0 Cytosol 0.500231530281216 0 0.52991248 0.000463060562432061 hm5C_site_4099 DeepMRMD:0.52991248;iRNA_m5C:0.000463060562432061 4100 chr17 1202156 1202156 1 + C A rs115690245 1202156 + 1202136 1202176 41 CCTGTGGGGGGTGCAGCTCCCGGGAAGGAGGCAACTGCCTC CCTGTGGGGGGTGCAGCTCCAGGGAAGGAGGCAACTGCCTC Direct Loss 0.957402854168786 0 0.9195932 0 prediction 0.914805708337571 Functional Loss - TUSC5 ENSG00000184811 UTR3 Human protein_coding chr17:1202156 chr17:1202156 . . 0 21 hm5C_associated_SNPs_48780 0 0 0 0 0 exosome 0.500231643921098 0 0.8391864 0.000463287842196625 hm5C_site_4100 DeepMRMD:0.8391864;iRNA_m5C:0.000463287842196625 4101 chr2 17998001 17998001 1 + C A rs201149255 17998001 + 17997981 17998021 41 GGGCTGCCCTGTGAGCACGGCGGGGCCAGCAGTGGGGGCAG GGGCTGCCCTGTGAGCACGGAGGGGCCAGCAGTGGGGGCAG Direct Loss 0.957394492403657 0 0.9038316 0 prediction 0.914788984807314 Functional Loss - MSGN1 ENSG00000151379 CDS Human protein_coding chr2:17998001 chr2:17998001 synonymous SNV . 0 21 hm5C_associated_SNPs_48781 0 0 0 0 0 exosome 0.500231643965411 0 0.8076632 0.000463287930822842 hm5C_site_4101 DeepMRMD:0.8076632;iRNA_m5C:0.000463287930822842 4102 chr19 39423095 39423095 1 + C T UCEC 39423095 + 39423075 39423115 41 CCACGGAAGGCCGGCCGCAGCTGAAGGGTGTGGTCCTGTGC CCACGGAAGGCCGGCCGCAGTTGAAGGGTGTGGTCCTGTGC Direct Loss 0.957358400617906 0 0.5384562 0 prediction 0.914716801235812 Functional Loss - MRPS12 ENSG00000128626 CDS Human protein_coding chr19:39423095 chr19:39423095 synonymous SNV . 0 21 hm5C_associated_SNPs_48782 0 0 1 0 0 Ribosome 0.500231643921092 0 0.0769124000000001 0.000463287842184856 hm5C_site_4102 DeepMRMD:0.0769124000000001;iRNA_m5C:0.000463287842184856 4103 chr7 148952336 148952336 1 + C T rs138956229 148952336 + 148952316 148952356 41 GTCTGGGACTTGCGGTGTCTCGGCATACCCCTCTCCTCTTC GTCTGGGACTTGCGGTGTCTTGGCATACCCCTCTCCTCTTC Direct Loss 0.957358020296124 0 0.7641474 0 prediction 0.914716040592248 Functional Loss - ZNF212 ENSG00000170260 UTR3 Human protein_coding chr7:148952336 chr7:148952336 . . 0 21 hm5C_associated_SNPs_48783 0 0 1 0 0 Cytosol 0.500231643921092 0 0.5282948 0.000463287842184634 hm5C_site_4103 DeepMRMD:0.5282948;iRNA_m5C:0.000463287842184634 4104 chr1 152648680 152648680 1 + C T UCEC 152648680 + 152648660 152648700 41 GGTCCCAGCTCTGGGGGCTGCTGCAGCTCTGGGGCTGGTGG GGTCCCAGCTCTGGGGGCTGTTGCAGCTCTGGGGCTGGTGG Direct Loss 0.9573530424097 0 0.81294537 0 prediction 0.9147060848194 Functional Loss - LCE2C ENSG00000187180 CDS Human protein_coding chr1:152648680 chr1:152648680 synonymous SNV . 0 21 hm5C_associated_SNPs_48784 0 0 0 0 0 exosome 0.500231643910055 0 0.62589074 0.000463287820109182 hm5C_site_4104 DeepMRMD:0.62589074;iRNA_m5C:0.000463287820109182 4105 chr3 110791191 110791191 1 + C A rs77345660 110791191 + 110791171 110791211 41 GCCGCGCCCGGGGCGAGGCCCTGGAAGGGCCAGGCCAGCGA GCCGCGCCCGGGGCGAGGCCATGGAAGGGCCAGGCCAGCGA Direct Loss 0.957342659302269 0 0.43506485 0 prediction 0.914685318604538 Functional Loss - NECTIN3 ENSG00000177707 UTR5 Human protein_coding chr3:110791191 chr3:110791191 . . 0 21 hm5C_associated_SNPs_48785 0 0 0 0 0 Ribosome 0.500231646708877 0 0 0.000463293417753308 hm5C_site_4105 DeepMRMD:0;iRNA_m5C:0.000463293417753308 4106 chr9 37740469 37740469 1 + C T LUSC 37740469 + 37740449 37740489 41 GACAGCCAGGAGGAGAGAAGCGGGATTGAAACCAGTGGCTT GACAGCCAGGAGGAGAGAAGTGGGATTGAAACCAGTGGCTT Direct Loss 0.9573328864415 0 0.89820623 0 prediction 0.914665772882999 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37740469 chr9:37740469 synonymous SNV . 0 21 hm5C_associated_SNPs_48786 0 0 0 0 0 exosome 0.500231643873029 0 0.79641246 0.000463287746057084 hm5C_site_4106 DeepMRMD:0.79641246;iRNA_m5C:0.000463287746057084 4107 chr15 59499228 59499228 1 + C G rs3809529 59499228 + 59499208 59499248 41 CCTGGGGATGGCCCTGTGTCCGCGTCAAGCAACGCGCATCC CCTGGGGATGGCCCTGTGTCGGCGTCAAGCAACGCGCATCC Direct Loss 0.957325140525543 0 0.4367097 0 prediction 0.914650281051086 Functional Loss - LDHAL6B ENSG00000171989 CDS Human protein_coding chr15:59499228 chr15:59499228 nonsynonymous SNV 0.008 1 21 hm5C_associated_SNPs_48787 0 0 0 0 0 unknown 0.500189434720771 0 0 0.000378869441542751 hm5C_site_4107 DeepMRMD:0;iRNA_m5C:0.000378869441542751 4108 chr19 4258395 4258395 1 + C G UCEC 4258395 + 4258375 4258415 41 AGGAGCGGCGGAGGCAGCAGCAGGAGGAGGACGAGCAGGAG AGGAGCGGCGGAGGCAGCAGGAGGAGGAGGACGAGCAGGAG Direct Loss 0.957323368344069 0 0.9236536 0 prediction 0.914646736688138 Functional Loss - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4258395 chr19:4258395 nonsynonymous SNV 0.057 0 21 hm5C_associated_SNPs_48788 0 0 1 0 1 Ribosome 0.500231643921092 0 0.8473072 0.000463287842184856 hm5C_site_4108 DeepMRMD:0.8473072;iRNA_m5C:0.000463287842184856 4109 chr5 140615858 140615858 1 + C T SKCM 140615858 + 140615838 140615878 41 CCTGCACCGAGCTGGTACCTCGGGCGGCCGAGCCGGGCTAC CCTGCACCGAGCTGGTACCTTGGGCGGCCGAGCCGGGCTAC Direct Loss 0.957312734597795 0 0.9136923 0 prediction 0.91462546919559 Functional Loss - PCDHB18P ENSG00000146001 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:140615858 chr5:140615858 . . 0 21 hm5C_associated_SNPs_48789 0 0 0 0 0 unknown 0.500231643928449 0 0.8273846 0.000463287856897088 hm5C_site_4109 DeepMRMD:0.8273846;iRNA_m5C:0.000463287856897088 4110 chr16 77769815 77769815 1 + C A LUSC 77769815 + 77769795 77769835 41 CCACAGCTCTCCGGGAAGCCCAGGAGGAAGTGGGTCTCCGT CCACAGCTCTCCGGGAAGCCAAGGAGGAAGTGGGTCTCCGT Direct Loss 0.957311280591482 0 0.9116816 0 prediction 0.914622561182965 Functional Loss - NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77769815 chr16:77769815 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_48790 0 0 0 0 2 nucleoplasm 0.500231643921092 0 0.8233632 0.000463287842184856 hm5C_site_4110 DeepMRMD:0.8233632;iRNA_m5C:0.000463287842184856 4111 chr7 150772487 150772487 1 + G A OV 150772487 - 150772467 150772507 41 CATGACAGTGAGCGCGTTGGCGTGAGTGACAGAGCGGACAG CATGACAGTGAGCGCGTTGGTGTGAGTGACAGAGCGGACAG Direct Loss 0.957310003728137 0 0.30421045 0 prediction 0.914620007456274 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150772487 chr7:150772487 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_48791 0 0 1 0 1 Ribosome 0.500239640822749 0 0 0.000479281645497487 hm5C_site_4111 DeepMRMD:0;iRNA_m5C:0.000479281645497487 4112 chrX 72667179 72667179 1 + C T LGG 72667179 + 72667159 72667199 41 GACGGCACAGCTGGGACAGGCGGCACAGGGGGCGGTGGGAG GACGGCACAGCTGGGACAGGTGGCACAGGGGGCGGTGGGAG Direct Loss 0.957287672504456 0 0.68393666 0 prediction 0.914575345008912 Functional Loss - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72667179 chrX:72667179 synonymous SNV . 0 21 hm5C_associated_SNPs_48792 0 0 0 0 0 exosome 0.500231643762782 0 0.36787332 0.000463287525564793 hm5C_site_4112 DeepMRMD:0.36787332;iRNA_m5C:0.000463287525564793 4113 chr2 219268015 219268015 1 + C T BLCA 219268015 + 219267995 219268035 41 CCTTCCGGGCCCGGCTGTTTCGAGAGTCCTGCGTCTTCCAC CCTTCCGGGCCCGGCTGTTTTGAGAGTCCTGCGTCTTCCAC Direct Loss 0.957285534341953 0 0.9502516 0 prediction 0.914571068683906 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219268015 chr2:219268015 stopgain 0.997 1 21 hm5C_associated_SNPs_48793 0 0 1 0 1 Cytosol 0.500231643921092 0 0.9005032 0.000463287842184856 hm5C_site_4113 DeepMRMD:0.9005032;iRNA_m5C:0.000463287842184856 4114 chr3 49842153 49842153 1 + C T PRAD 49842153 + 49842133 49842173 41 TTTGCTGACTTGGTGCACAACTGGATGGAGCTGCCTGAGAC TTTGCTGACTTGGTGCACAATTGGATGGAGCTGCCTGAGAC Direct Loss 0.95727638922064 0 0.39123416 0 prediction 0.914552778441281 Functional Loss - FAM212A ENSG00000185614 CDS Human protein_coding chr3:49842153 chr3:49842153 synonymous SNV . 0 21 hm5C_associated_SNPs_48794 0 0 0 0 0 exosome 0.500231798001763 0 0 0.00046359600352508 hm5C_site_4114 DeepMRMD:0;iRNA_m5C:0.00046359600352508 4115 chr2 242814595 242814595 1 + C T BLCA 242814595 + 242814575 242814615 41 TTCAAAGGCCGGGGCTCCCTCTGCAGCCCGGTTGGCGTGGC TTCAAAGGCCGGGGCTCCCTTTGCAGCCCGGTTGGCGTGGC Direct Loss 0.957262802470583 0 0.25384834 0 prediction 0.914525604941167 Functional Loss - RTP5 ENSG00000188011 CDS Human protein_coding chr2:242814595 chr2:242814595 synonymous SNV . 0 21 hm5C_associated_SNPs_48795 0 0 0 0 0 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4115 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4116 chr11 77775039 77775039 1 + C T LUSC 77775039 + 77775019 77775059 41 TGATGATCCCCAGCCTTCTGCGGGACGTGCAGCTGAGTGGG TGATGATCCCCAGCCTTCTGTGGGACGTGCAGCTGAGTGGG Direct Loss 0.957256076089775 0 0.9153924 0 prediction 0.91451215217955 Functional Loss - THRSP ENSG00000151365 CDS Human protein_coding chr11:77775039 chr11:77775039 nonsynonymous SNV 0.400 1 21 hm5C_associated_SNPs_48796 0 0 0 0 0 nucleolus 0.500240350258647 0 0.8307848 0.000480700517293098 hm5C_site_4116 DeepMRMD:0.8307848;iRNA_m5C:0.000480700517293098 4117 chr22 37261048 37261048 1 + C T STAD 37261048 + 37261028 37261068 41 TCCATGCTTTGCAGAGCAAGCTGGAGGAGCGCTTCGGGCCA TCCATGCTTTGCAGAGCAAGTTGGAGGAGCGCTTCGGGCCA Direct Loss 0.95724586581618 0 0.86102086 0 prediction 0.91449173163236 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37261048 chr22:37261048 synonymous SNV . 0 21 hm5C_associated_SNPs_48797 0 0 0 0 2 exosome 0.500231648735715 0 0.72204172 0.000463297471430701 hm5C_site_4117 DeepMRMD:0.72204172;iRNA_m5C:0.000463297471430701 4118 chr3 9960070 9960070 1 + C T rs708567 9960070 + 9960050 9960090 41 GTTTGGAGGAGCAGCTGACTCAGGGGTGGAGGAGCCTAGGA GTTTGGAGGAGCAGCTGACTTAGGGGTGGAGGAGCCTAGGA Direct Loss 0.957238882344985 0 0.93523467 0 prediction 0.914477764689971 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9960070 chr3:9960070 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_48798 0 0 1 2 2 Ribosome 0.500231643921092 0 0.87046934 0.000463287842184856 hm5C_site_4118 DeepMRMD:0.87046934;iRNA_m5C:0.000463287842184856 4119 chr16 31768545 31768545 1 + C A rs544980641 31768545 + 31768525 31768565 41 CGCCGGTAATCCCAGCATTTCGGGAGGCTGAGGCAGGAGGA CGCCGGTAATCCCAGCATTTAGGGAGGCTGAGGCAGGAGGA Direct Loss 0.957238506237381 0 0.9329045 0 prediction 0.914477012474762 Functional Loss - ZNF720 ENSG00000197302 UTR3 Human protein_coding chr16:31768545 chr16:31768545 . . 0 21 hm5C_associated_SNPs_48799 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.865809 0.000463287842184856 hm5C_site_4119 DeepMRMD:0.865809;iRNA_m5C:0.000463287842184856 4120 chr17 34901624 34901624 1 + C T UCEC 34901624 + 34901604 34901644 41 GGGGAGGAGGAGTTCCCCTTCGAGAGGAGGCAGATTCCCCT GGGGAGGAGGAGTTCCCCTTTGAGAGGAGGCAGATTCCCCT Direct Loss 0.95722882161572 0 0.91082513 0 prediction 0.914457643231441 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34901624 chr17:34901624 synonymous SNV . 0 21 hm5C_associated_SNPs_48800 0 0 1 0 1 Nucleus 0.500231643921092 0 0.82165026 0.000463287842184856 hm5C_site_4120 DeepMRMD:0.82165026;iRNA_m5C:0.000463287842184856 4121 chr1 152883741 152883741 1 + C A COAD 152883741 + 152883721 152883761 41 TGGAGAAGCAGGAGGCACAGCTGGAGCTCCCAGAGCAGCAG TGGAGAAGCAGGAGGCACAGATGGAGCTCCCAGAGCAGCAG Direct Loss 0.957228601256646 0 0.4611514 0 prediction 0.914457202513291 Functional Loss - IVL ENSG00000163207 CDS Human protein_coding chr1:152883741 chr1:152883741 nonsynonymous SNV 0.007 1 21 hm5C_associated_SNPs_48801 0 0 0 0 0 unknown 0.500231643923212 0 0 0.000463287846424132 hm5C_site_4121 DeepMRMD:0;iRNA_m5C:0.000463287846424132 4122 chr18 12094049 12094049 1 + C G UCEC 12094049 + 12094029 12094069 41 GGGTCGTTCCTGGCGGCCTGCAGGAGACGCATGGCTACCTG GGGTCGTTCCTGGCGGCCTGGAGGAGACGCATGGCTACCTG Direct Loss 0.957228552727461 0 0.8918214 0 prediction 0.914457105454923 Functional Loss - ANKRD62 ENSG00000181626 CDS Human protein_coding chr18:12094049 chr18:12094049 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_48802 0 0 0 0 0 exosome 0.500231641947124 0 0.7836428 0.000463283894248656 hm5C_site_4122 DeepMRMD:0.7836428;iRNA_m5C:0.000463283894248656 4123 chr15 72104192 72104192 1 + C T UCEC 72104192 + 72104172 72104212 41 GCTGAAGAAGTGCCTGCAGGCGGGGATGAACCAGGACGGTG GCTGAAGAAGTGCCTGCAGGTGGGGATGAACCAGGACGGTG Direct Loss 0.95722819721398 0 0.9134007 0 prediction 0.91445639442796 Functional Loss - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72104192 chr15:72104192 . 0.978 1 21 hm5C_associated_SNPs_48803 2 0 0 0 2 nucleus 0.500231643921744 0 0.8268014 0.000463287843487592 hm5C_site_4123 DeepMRMD:0.8268014;iRNA_m5C:0.000463287843487592 Retinitis Pigmentosa, Recessive Retinitis Pigmentosa, Recessive 4124 chr6 27806769 27806769 1 + C T LUSC 27806769 + 27806749 27806789 41 CCAGGGGAGCTGGCCAAGCACGCGGTGTCGGAGGGCACCAA CCAGGGGAGCTGGCCAAGCATGCGGTGTCGGAGGGCACCAA Direct Loss 0.957228165919104 0 0.9151159 0 prediction 0.914456331838207 Functional Loss - HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806769 chr6:27806769 synonymous SNV . 0 21 hm5C_associated_SNPs_48804 0 0 1 0 2 Ribosome 0.500231643921092 0 0.8302318 0.000463287842184856 hm5C_site_4124 DeepMRMD:0.8302318;iRNA_m5C:0.000463287842184856 4125 chr10 7763735 7763735 1 + C A ACC 7763735 + 7763715 7763755 41 GAGAAGAGAAGGCTGGTGAACTGGAGGTGAGTGCACACCGG GAGAAGAGAAGGCTGGTGAAATGGAGGTGAGTGCACACCGG Direct Loss 0.957217448256903 0 0.89233816 0 prediction 0.914434896513805 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7763735 chr10:7763735 nonsynonymous SNV 0.239 4 21 hm5C_associated_SNPs_48805 0 0 1 0 1 cytosol 0.500231643921092 0 0.78467632 0.000463287842184856 hm5C_site_4125 DeepMRMD:0.78467632;iRNA_m5C:0.000463287842184856 4126 chr5 96237351 96237351 1 + C T SKCM 96237351 + 96237331 96237371 41 GCTTCCTCCAGGGGGTTTTCCAGGAAGACCCTGAATGGAGG GCTTCCTCCAGGGGGTTTTCTAGGAAGACCCTGAATGGAGG Direct Loss 0.957209382009708 0 0.9088402 0 prediction 0.914418764019415 Functional Loss - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96237351 chr5:96237351 stopgain 0.894 0 21 hm5C_associated_SNPs_48806 0 0 0 0 1 exosome 0.500231643921133 0 0.8176804 0.000463287842266125 hm5C_site_4126 DeepMRMD:0.8176804;iRNA_m5C:0.000463287842266125 4127 chr9 119461858 119461858 1 + C T SKCM 119461858 + 119461838 119461878 41 GGGGCTATAGTGTCCTTATTCGAGAGGGACTTACCTGTCCG GGGGCTATAGTGTCCTTATTTGAGAGGGACTTACCTGTCCG Direct Loss 0.957194065692224 0 0.89496267 0 prediction 0.914388131384448 Functional Loss - TRIM32 ENSG00000119401 CDS Human protein_coding chr9:119461858 chr9:119461858 stopgain 0.996 0 21 hm5C_associated_SNPs_48807 0 0 1 0 0 chromatin 0.500231643921093 0 0.78992534 0.0004632878421853 hm5C_site_4127 DeepMRMD:0.78992534;iRNA_m5C:0.0004632878421853 4128 chr9 33750558 33750558 1 + C G UCEC 33750558 + 33750538 33750578 41 CCCCGCACGCTGGCCGGGACCGGGAAGGGCGGTCAAGTGTG CCCCGCACGCTGGCCGGGACGGGGAAGGGCGGTCAAGTGTG Direct Loss 0.957190551229983 0 0.8759166 0 prediction 0.914381102459966 Functional Loss - PRSS3 ENSG00000010438 CDS Human protein_coding chr9:33750558 chr9:33750558 nonsynonymous SNV 0.046 2 21 hm5C_associated_SNPs_48808 0 0 0 0 0 Ribosome 0.500231661038271 0 0.7518332 0.000463322076541761 hm5C_site_4128 DeepMRMD:0.7518332;iRNA_m5C:0.000463322076541761 4129 chr11 65123734 65123734 1 + C T rs139835463 65123734 + 65123714 65123754 41 CCCCCCTGAGCCACCTCCCCCGGGGCTCACATCCCAGGCTC CCCCCCTGAGCCACCTCCCCTGGGGCTCACATCCCAGGCTC Direct Loss 0.95718346693314 0 0.9391078 0 prediction 0.914366933866281 Functional Loss - TIGD3 ENSG00000173825 CDS Human protein_coding chr11:65123734 chr11:65123734 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_48809 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8782156 0.000463287842184856 hm5C_site_4129 DeepMRMD:0.8782156;iRNA_m5C:0.000463287842184856 4130 chr3 63898895 63898895 1 + C A COAD 63898895 + 63898875 63898915 41 GCGAAGTCATGGGGCTCTGTCGGGAAGGTGAGTCCAGCCCC GCGAAGTCATGGGGCTCTGTAGGGAAGGTGAGTCCAGCCCC Direct Loss 0.957167392225647 0 0.9262108 0 prediction 0.914334784451293 Functional Loss - ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63898895 chr3:63898895 synonymous SNV . 0 21 hm5C_associated_SNPs_48810 0 0 1 0 2 Cytosol 0.500231643619051 0 0.8524216 0.000463287238102739 hm5C_site_4130 DeepMRMD:0.8524216;iRNA_m5C:0.000463287238102739 4131 chr17 58506771 58506771 1 + C A LUAD 58506771 + 58506751 58506791 41 AGAGGTCCTTGCTGGCCGACCGGGAAGACAGTCTGCCCAAG AGAGGTCCTTGCTGGCCGACAGGGAAGACAGTCTGCCCAAG Direct Loss 0.957163816129615 0 0.90348184 0 prediction 0.914327632259229 Functional Loss - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58506771 chr17:58506771 synonymous SNV . 0 21 hm5C_associated_SNPs_48811 0 0 0 0 1 exosome 0.500231643920791 0 0.80696368 0.000463287841581339 hm5C_site_4131 DeepMRMD:0.80696368;iRNA_m5C:0.000463287841581339 4132 chrX 37028251 37028251 1 + C T PRAD 37028251 + 37028231 37028271 41 GCCCAGAGCCTCCCAAGACTCGGGTGTCCAGTCTCCCCCCG GCCCAGAGCCTCCCAAGACTTGGGTGTCCAGTCTCCCCCCG Direct Loss 0.957151937432175 0 0.92067015 0 prediction 0.914303874864351 Functional Loss - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37028251 chrX:37028251 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_48812 0 0 0 0 0 unknown 0.500231643921092 0 0.8413403 0.000463287842184856 hm5C_site_4132 DeepMRMD:0.8413403;iRNA_m5C:0.000463287842184856 4133 chr15 79165480 79165480 1 + C T rs555391005 79165480 + 79165460 79165500 41 GGTGATTGAGGCTTGAGGGCCGGGGGCGGCGCGGGCTGCGC GGTGATTGAGGCTTGAGGGCTGGGGGCGGCGCGGGCTGCGC Direct Loss 0.95714608202257 0 0.9017401 0 prediction 0.91429216404514 Functional Loss - MORF4L1 ENSG00000185787 UTR5 Human protein_coding chr15:79165480 chr15:79165480 . . 0 21 hm5C_associated_SNPs_48813 0 0 1 0 2 Nucleus 0.500231643921092 0 0.8034802 0.000463287842184856 hm5C_site_4133 DeepMRMD:0.8034802;iRNA_m5C:0.000463287842184856 4134 chr12 57167880 57167880 1 + C G BRCA 57167880 + 57167860 57167900 41 ACAGGCTGGAGACGGTGACCCTGGATGTTACCAAGATGGAG ACAGGCTGGAGACGGTGACCGTGGATGTTACCAAGATGGAG Direct Loss 0.95714152528592 0 0.11085892 0 prediction 0.914283050571839 Functional Loss - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57167880 chr12:57167880 nonsynonymous SNV 0.945 5 21 hm5C_associated_SNPs_48814 0 0 0 0 1 Endoplasmic reticulum 0.500231643001751 0 0 0.000463286003502761 hm5C_site_4134 DeepMRMD:0;iRNA_m5C:0.000463286003502761 4135 chr2 176982051 176982051 1 + C A SKCM 176982051 + 176982031 176982071 41 CCTACGCCACCGGGAAAACCCAAGAGTACAATAATAGCCCC CCTACGCCACCGGGAAAACCAAAGAGTACAATAATAGCCCC Direct Loss 0.957131769772385 0 0.8768984 0 prediction 0.91426353954477 Functional Loss - HOXD10 ENSG00000128710 CDS Human protein_coding chr2:176982051 chr2:176982051 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_48815 0 0 1 0 0 exosome 0.500231643921092 0 0.7537968 0.000463287842184856 hm5C_site_4135 DeepMRMD:0.7537968;iRNA_m5C:0.000463287842184856 4136 chr6 26156698 26156698 1 + C T STAD 26156698 + 26156678 26156718 41 GAAGAAGAAGGCCCGCAAGTCTGCAGGTGCGGCCAAGCGCA GAAGAAGAAGGCCCGCAAGTTTGCAGGTGCGGCCAAGCGCA Direct Loss 0.957113766709912 0 0.38239533 0 prediction 0.914227533419824 Functional Loss - HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26156698 chr6:26156698 nonsynonymous SNV 0.760 1 21 hm5C_associated_SNPs_48816 0 0 1 0 0 Ribosome 0.500231643920789 0 0 0.000463287841577564 hm5C_site_4136 DeepMRMD:0;iRNA_m5C:0.000463287841577564 4137 chr7 6193722 6193722 1 + C T rs200010499 6193722 + 6193702 6193742 41 CGCGGAGGGCCCGCGGGACTCGGCGTTGGCGGAAGCCCCGG CGCGGAGGGCCCGCGGGACTTGGCGTTGGCGGAAGCCCCGG Direct Loss 0.957104294448795 0 0.90759766 0 prediction 0.914208588897591 Functional Loss - USP42 ENSG00000106346 CDS Human protein_coding chr7:6193722 chr7:6193722 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48817 0 0 1 0 0 Ribosome 0.500231644384381 0 0.81519532 0.000463288768762338 hm5C_site_4137 DeepMRMD:0.81519532;iRNA_m5C:0.000463288768762338 4138 chr19 47260141 47260141 1 + C T UCS 47260141 + 47260121 47260161 41 AAGTTCGGGCCCGGGGTCATCGAGAACCCCCAGTACCCCAA AAGTTCGGGCCCGGGGTCATTGAGAACCCCCAGTACCCCAA Direct Loss 0.957101960625319 0 0.8801867 0 prediction 0.914203921250637 Functional Loss - FKRP ENSG00000181027 CDS Human protein_coding chr19:47260141 chr19:47260141 synonymous SNV . 0 21 hm5C_associated_SNPs_48818 0 0 0 0 0 Nucleus 0.500231643921092 0 0.7603734 0.000463287842183302 hm5C_site_4138 DeepMRMD:0.7603734;iRNA_m5C:0.000463287842183302 4139 chr19 19655449 19655449 1 + C T LGG 19655449 + 19655429 19655469 41 AGGAGGAGAGCGGCTTCCGGCGCGAGGGGTCCTCGGGCCCC AGGAGGAGAGCGGCTTCCGGTGCGAGGGGTCCTCGGGCCCC Direct Loss 0.957096955753584 0 0.886404 0 prediction 0.914193911507168 Functional Loss - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19655449 chr19:19655449 nonsynonymous SNV 0.115 0 21 hm5C_associated_SNPs_48819 0 0 0 0 0 exosome 0.500231641481323 0 0.772808 0.000463282962646971 hm5C_site_4139 DeepMRMD:0.772808;iRNA_m5C:0.000463282962646971 4140 chr16 129665 129665 1 + C T UCEC 129665 + 129645 129685 41 GTTGGAGTTCTTCGACCAGCCGGCAGTCCCCCTGGCCCGGG GTTGGAGTTCTTCGACCAGCTGGCAGTCCCCCTGGCCCGGG Direct Loss 0.95709202958593 0 0.49002105 0 prediction 0.91418405917186 Functional Loss - MPG ENSG00000103152 CDS Human protein_coding chr16:129665 chr16:129665 nonsynonymous SNV 0.184 4 21 hm5C_associated_SNPs_48820 0 0 1 0 1 Ribosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4140 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4141 chr11 31805009 31805009 1 + C T LGG 31805009 + 31804989 31805029 41 AAAATGGATCTGGCAGAATCCGCCAAGCGGCTGGGCCCAGG AAAATGGATCTGGCAGAATCTGCCAAGCGGCTGGGCCCAGG Direct Loss 0.957056593894434 0 0.7751546 0 prediction 0.914113187788868 Functional Loss - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31805009 chr11:31805009 nonsynonymous SNV 0.473 1 21 hm5C_associated_SNPs_48821 0 0 0 0 1 Nucleus 0.500231643921141 0 0.5503092 0.00046328784228189 hm5C_site_4141 DeepMRMD:0.5503092;iRNA_m5C:0.00046328784228189 4142 chr19 14674683 14674683 1 + C T UCEC 14674683 + 14674663 14674703 41 CCACGGCCACACTGTACTTCCGGGACCTGGGGGCCCAGATC CCACGGCCACACTGTACTTCTGGGACCTGGGGGCCCAGATC Direct Loss 0.957056117695414 0 0.90441895 0 prediction 0.914112235390828 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14674683 chr19:14674683 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48822 0 0 1 0 2 Ribosome 0.500231643917725 0 0.8088379 0.000463287835449133 hm5C_site_4142 DeepMRMD:0.8088379;iRNA_m5C:0.000463287835449133 4143 chr2 3691501 3691501 1 + C T OV 3691501 + 3691481 3691521 41 GGCCTGGCCCGTGTCTTCATCGGCATCAACGACCTGGAGAA GGCCTGGCCCGTGTCTTCATTGGCATCAACGACCTGGAGAA Direct Loss 0.957054970605566 0 0.78168297 0 prediction 0.914109941211131 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3691501 chr2:3691501 synonymous SNV . 0 21 hm5C_associated_SNPs_48823 0 0 0 0 0 membrane 0.499955471703927 0 0.56336594 0 hm5C_site_4143 DeepMRMD:0.56336594;iRNA_m5C:0 4144 chr1 1222549 1222549 1 + C T SKCM 1222549 + 1222529 1222569 41 CGTCAGGCGTGGCGGCTGTCCAGGACTGGTACCACTTCCAC CGTCAGGCGTGGCGGCTGTCTAGGACTGGTACCACTTCCAC Direct Loss 0.957054821775934 0 0.9267926 0 prediction 0.914109643551868 Functional Loss - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222549 chr1:1222549 stopgain 0.000 0 21 hm5C_associated_SNPs_48824 0 0 0 0 1 exosome 0.500231643921093 0 0.8535852 0.000463287842186855 hm5C_site_4144 DeepMRMD:0.8535852;iRNA_m5C:0.000463287842186855 4145 chr19 40097939 40097939 1 + C T UCEC 40097939 + 40097919 40097959 41 TGTGAAGATGGTGCAAGTGTCGAGAGATATCTCCCTGACCT TGTGAAGATGGTGCAAGTGTTGAGAGATATCTCCCTGACCT Direct Loss 0.957048368423574 0 0.9301419 0 prediction 0.914096736847147 Functional Loss - LGALS13 ENSG00000105198 CDS Human protein_coding chr19:40097939 chr19:40097939 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48825 0 0 0 0 1 unknown 0.500231640600419 0 0.8602838 0.000463281200838717 hm5C_site_4145 DeepMRMD:0.8602838;iRNA_m5C:0.000463281200838717 4146 chr19 19638863 19638863 1 + C T STAD 19638863 + 19638843 19638883 41 CGCTGGGTGCCCCCCTTGATCGGGGAGCTGTACGGGCTGCG CGCTGGGTGCCCCCCTTGATTGGGGAGCTGTACGGGCTGCG Direct Loss 0.957042752976342 0 0.9637331 0 prediction 0.914085505952685 Functional Loss - NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638863 chr19:19638863 synonymous SNV . 0 21 hm5C_associated_SNPs_48826 0 0 1 0 2 Endoplasmic reticulum 0.500231643080895 0 0.9274662 0.000463286161790144 hm5C_site_4146 DeepMRMD:0.9274662;iRNA_m5C:0.000463286161790144 4147 chr17 78388983 78388983 1 + C A rs374446721 78388983 + 78388963 78389003 41 TGACGTGCGGAAGGGGTGCCCGGGACGAAGCCATGGCCCTG TGACGTGCGGAAGGGGTGCCAGGGACGAAGCCATGGCCCTG Direct Loss 0.9570397804017 0 0.8855996 0 prediction 0.9140795608034 Functional Loss - ENDOV ENSG00000173818 UTR5 Human protein_coding chr17:78388983 chr17:78388983 . . 0 21 hm5C_associated_SNPs_48827 0 0 0 0 1 Ribosome 0.500231643921092 0 0.7711992 0.000463287842184856 hm5C_site_4147 DeepMRMD:0.7711992;iRNA_m5C:0.000463287842184856 4148 chr15 79045594 79045594 1 + C T UCEC 79045594 + 79045574 79045614 41 GTGAGGACTTCCTGCATGAGCGGGACACCAGCCCTGACAAG GTGAGGACTTCCTGCATGAGTGGGACACCAGCCCTGACAAG Direct Loss 0.95703900174257 0 0.8936074 0 prediction 0.91407800348514 Functional Loss - LOC646938 ENSG00000238166 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:79045594 chr15:79045594 . . 0 21 hm5C_associated_SNPs_48828 0 0 0 1 0 unknown 0.500231643921093 0 0.7872148 0.000463287842185078 hm5C_site_4148 DeepMRMD:0.7872148;iRNA_m5C:0.000463287842185078 4149 chr1 71512937 71512937 1 + C G rs148227847 71512937 + 71512917 71512957 41 AGGTACACGACGATGACGACCGGGGTGGTGAGAAGCTGCCC AGGTACACGACGATGACGACGGGGGTGGTGAGAAGCTGCCC Direct Loss 0.957037293511396 0 0.9346616 0 prediction 0.914074587022792 Functional Loss - PTGER3 ENSG00000050628 CDS Human protein_coding chr1:71512937 chr1:71512937 synonymous SNV . 0 21 hm5C_associated_SNPs_48829 0 0 0 0 0 Endoplasmic reticulum 0.500436670216973 0 0.8693232 0.000873340433946934 hm5C_site_4149 DeepMRMD:0.8693232;iRNA_m5C:0.000873340433946934 4150 chr20 54824625 54824625 1 + C A UCEC 54824625 + 54824605 54824645 41 TCATGCATGAAGGGGGCAGTCACCATCACCATTCTCCTGGG TCATGCATGAAGGGGGCAGTAACCATCACCATTCTCCTGGG Direct Loss 0.957035197779415 0 0.64335394 0 prediction 0.91407039555883 Functional Loss - MC3R ENSG00000124089 CDS Human protein_coding chr20:54824625 chr20:54824625 synonymous SNV . 0 21 hm5C_associated_SNPs_48830 0 0 0 0 0 unknown 0.500231644893279 0 0.28670788 0.000463289786557075 hm5C_site_4150 DeepMRMD:0.28670788;iRNA_m5C:0.000463289786557075 4151 chr19 7985294 7985294 1 + C G HNSC 7985294 + 7985274 7985314 41 GAGCGGCCCCGGCGCGCTATCTGGGCGAGGTGACCGGTCCC GAGCGGCCCCGGCGCGCTATGTGGGCGAGGTGACCGGTCCC Direct Loss 0.957029580333823 0 0.9335259 0 prediction 0.914059160667646 Functional Loss - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7985294 chr19:7985294 nonsynonymous SNV 0.553 0 21 hm5C_associated_SNPs_48831 0 0 1 0 0 Ribosome 0.500231644127941 0 0.8670518 0.000463288255882155 hm5C_site_4151 DeepMRMD:0.8670518;iRNA_m5C:0.000463288255882155 4152 chr19 49464847 49464847 1 + C T STAD 49464847 + 49464827 49464867 41 GACCGTGACCATCTTTGTGGCGGGAGTGCTCACCGCCTCAC GACCGTGACCATCTTTGTGGTGGGAGTGCTCACCGCCTCAC Direct Loss 0.957027088637573 0 0.8792026 0 prediction 0.914054177275146 Functional Loss - BAX ENSG00000087088 CDS Human protein_coding chr19:49464847 chr19:49464847 nonsynonymous SNV 0.916 2 21 hm5C_associated_SNPs_48832 0 0 1 0 2 Cytosol 0.50023164335967 0 0.7584052 0.000463286719339706 hm5C_site_4152 DeepMRMD:0.7584052;iRNA_m5C:0.000463286719339706 4153 chr5 633995 633995 1 + C T CESC 633995 + 633975 634015 41 GCAGAGTGCGAGTGGGACCTCGGCAGGCCTCCCGGGAGCAC GCAGAGTGCGAGTGGGACCTTGGCAGGCCTCCCGGGAGCAC Direct Loss 0.95702570808283 0 0.59633654 0 prediction 0.914051416165659 Functional Loss - CEP72 ENSG00000112877 CDS Human protein_coding chr5:633995 chr5:633995 synonymous SNV . 0 21 hm5C_associated_SNPs_48833 0 0 1 0 1 chromatin 0.500231643921239 0 0.19267308 0.000463287842478177 hm5C_site_4153 DeepMRMD:0.19267308;iRNA_m5C:0.000463287842478177 4154 chr1 161494936 161494936 1 + C T COAD 161494936 + 161494916 161494956 41 GCGCCAGGCCACCAAGGACGCGGGGGCCATCGCGGGGCTCA GCGCCAGGCCACCAAGGACGTGGGGGCCATCGCGGGGCTCA Direct Loss 0.957024342286704 0 0.92773867 0 prediction 0.914048684573408 Functional Loss - HSPA6 ENSG00000173110 CDS Human protein_coding chr1:161494936 chr1:161494936 nonsynonymous SNV 0.284 2 21 hm5C_associated_SNPs_48834 0 0 0 0 0 exosome 0.500231643921092 0 0.85547734 0.000463287842184856 hm5C_site_4154 DeepMRMD:0.85547734;iRNA_m5C:0.000463287842184856 4155 chr22 25016351 25016351 1 + C T COAD 25016351 + 25016331 25016371 41 GCTATGAGCTGGCACACCAGCGGCATGGGCGGCTGCCCTGG GCTATGAGCTGGCACACCAGTGGCATGGGCGGCTGCCCTGG Direct Loss 0.957015824413312 0 0.8391727 0 prediction 0.914031648826625 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25016351 chr22:25016351 nonsynonymous SNV 0.019 3 21 hm5C_associated_SNPs_48835 0 0 0 0 1 exosome 0.500231643921113 0 0.6783454 0.00046328784222549 hm5C_site_4155 DeepMRMD:0.6783454;iRNA_m5C:0.00046328784222549 4156 chr10 60028871 60028871 1 + C G rs570784890 60028871 + 60028851 60028891 41 CACGCATGCTCAGCACCTACCAGGGTCGAGCTCACACACGT CACGCATGCTCAGCACCTACGAGGGTCGAGCTCACACACGT Direct Loss 0.957008884114476 0 0.93417513 0 prediction 0.914017768228953 Functional Loss - CISD1 ENSG00000122873 UTR5 Human protein_coding chr10:60028871 chr10:60028871 . . 0 21 hm5C_associated_SNPs_48836 0 0 0 0 0 Ribosome 0.50023166908721 0 0.86835026 0.000463338174419237 hm5C_site_4156 DeepMRMD:0.86835026;iRNA_m5C:0.000463338174419237 4157 chr22 50987960 50987960 1 + C A LUAD 50987960 + 50987940 50987980 41 CGTGGGGACATCTACGTCACCGGGGGTCACCTCTTCTACCG CGTGGGGACATCTACGTCACAGGGGGTCACCTCTTCTACCG Direct Loss 0.956991637732394 0 0.93621975 0 prediction 0.913983275464788 Functional Loss - KLHDC7B ENSG00000130487 CDS Human protein_coding chr22:50987960 chr22:50987960 synonymous SNV . 0 21 hm5C_associated_SNPs_48837 0 0 0 0 0 nucleolus 0.500231644133534 0 0.8724395 0.00046328826706743 hm5C_site_4157 DeepMRMD:0.8724395;iRNA_m5C:0.00046328826706743 4158 chr20 61919072 61919072 1 + C T BLCA 61919072 + 61919052 61919092 41 ACGTGCGCGGACACCTCCACCGAGAGGAGGAGCTCGGACAG ACGTGCGCGGACACCTCCACTGAGAGGAGGAGCTCGGACAG Direct Loss 0.956939856543037 0 0.94407237 0 prediction 0.913879713086073 Functional Loss - ARFGAP1 ENSG00000101199 CDS Human protein_coding chr20:61919072 chr20:61919072 synonymous SNV . 0 21 hm5C_associated_SNPs_48838 0 0 1 0 0 Nucleus 0.500231643928162 0 0.88814474 0.000463287856323547 hm5C_site_4158 DeepMRMD:0.88814474;iRNA_m5C:0.000463287856323547 4159 chr2 176995385 176995385 1 + C T rs150245338 176995385 + 176995365 176995405 41 CAGGAGTACTTCCACCCCGGCGGGGGCAGCCCGGCCGCTGC CAGGAGTACTTCCACCCCGGTGGGGGCAGCCCGGCCGCTGC Direct Loss 0.956938014507626 0 0.93280464 0 prediction 0.913876029015251 Functional Loss - HOXD8 ENSG00000175879 CDS Human protein_coding chr2:176995385 chr2:176995385 synonymous SNV . 0 21 hm5C_associated_SNPs_48839 0 0 0 0 0 Cytosol 0.500231643921092 0 0.86560928 0.000463287842184856 hm5C_site_4159 DeepMRMD:0.86560928;iRNA_m5C:0.000463287842184856 4160 chr15 29346518 29346518 1 + C T rs144066720 29346518 + 29346498 29346538 41 GGTGGAGGAGTGGACGGACTCGGCGGGCCCGCACCCCCACG GGTGGAGGAGTGGACGGACTTGGCGGGCCCGCACCCCCACG Direct Loss 0.956931774460508 0 0.9122436 0 prediction 0.913863548921016 Functional Loss - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29346518 chr15:29346518 nonsynonymous SNV 0.114 1 21 hm5C_associated_SNPs_48840 0 0 1 0 0 Cytosol 0.500231648241745 0 0.8244872 0.000463296483490749 hm5C_site_4160 DeepMRMD:0.8244872;iRNA_m5C:0.000463296483490749 4161 chr8 122652154 122652154 1 + C G rs111529237 122652154 + 122652134 122652174 41 CCGTTCATCGGCTGGGCGCTCGAGACGGCGCCCCCAGATCT CCGTTCATCGGCTGGGCGCTGGAGACGGCGCCCCCAGATCT Direct Loss 0.956927560472447 0 0.84293693 0 prediction 0.913855120944895 Functional Loss - HAS2-AS1 ENSG00000248690 ncRNA_exonic Human antisense chr8:122652154 chr8:122652154 . . 0 21 hm5C_associated_SNPs_48841 0 0 1 0 0 unknown 0.50023164391625 0 0.68587386 0.000463287832500381 hm5C_site_4161 DeepMRMD:0.68587386;iRNA_m5C:0.000463287832500381 4162 chr11 113857672 113857672 1 + C A UCEC 113857672 + 113857652 113857692 41 CTTGGCTGCGTCACCTGGTTCTGGAGAGAATCGCCTGGCTA CTTGGCTGCGTCACCTGGTTATGGAGAGAATCGCCTGGCTA Direct Loss 0.956927532349521 0 0.6045874 0 prediction 0.913855064699042 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113857672 chr11:113857672 nonsynonymous SNV 0.181 4 21 hm5C_associated_SNPs_48842 0 0 0 0 1 Cytosol 0.500260382615166 0 0.2091748 0.000520765230331399 hm5C_site_4162 DeepMRMD:0.2091748;iRNA_m5C:0.000520765230331399 4163 chr17 46628442 46628442 1 + C A PRAD 46628442 + 46628422 46628462 41 CCGCTTGGACGCCGCCGACCCCGGGGGGCTCTTGTCCCCTC CCGCTTGGACGCCGCCGACCACGGGGGGCTCTTGTCCCCTC Direct Loss 0.956927483176346 0 0.9330416 0 prediction 0.913854966352692 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628442 chr17:46628442 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_48843 0 0 1 0 1 Nucleus 0.500231643989884 0 0.8660832 0.000463287979768356 hm5C_site_4163 DeepMRMD:0.8660832;iRNA_m5C:0.000463287979768356 4164 chr2 234637917 234637917 1 + C G rs45595237 234637917 + 234637897 234637937 41 TCAGCATGCGGGAGGTCTTGCGGGAGCTCCATGCCAGAGGC TCAGCATGCGGGAGGTCTTGGGGGAGCTCCATGCCAGAGGC Direct Loss 0.956919497291151 0 0.9150311 0 prediction 0.913838994582302 Functional Loss - UGT1A3 ENSG00000241635;ENSG00000243135 CDS Human other chr2:234637917 chr2:234637917 nonsynonymous SNV 0.014 1 21 hm5C_associated_SNPs_48844 0 0 0 0 0 exosome 0.500231643921116 0 0.8300622 0.00046328784223193 hm5C_site_4164 DeepMRMD:0.8300622;iRNA_m5C:0.00046328784223193 4165 chr10 11894170 11894170 1 + C T KIRC 11894170 + 11894150 11894190 41 CCTTCAGCAGAGGCGGCAGCCTGGAGAGTCGAAGCAGCAGC CCTTCAGCAGAGGCGGCAGCTTGGAGAGTCGAAGCAGCAGC Direct Loss 0.956911141266053 0 0.59735334 0 prediction 0.913822282532105 Functional Loss - PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11894170 chr10:11894170 synonymous SNV . 0 21 hm5C_associated_SNPs_48845 0 0 1 0 1 chromatin 0.500231645425249 0 0.19470668 0.000463290850497344 hm5C_site_4165 DeepMRMD:0.19470668;iRNA_m5C:0.000463290850497344 4166 chr19 58549328 58549328 1 + C T SKCM 58549328 + 58549308 58549348 41 AAGCCCAGCGTCTGCGCTTCCGGCAGTTCCAGTACCACGTG AAGCCCAGCGTCTGCGCTTCTGGCAGTTCCAGTACCACGTG Direct Loss 0.956893562962652 0 0.9072499 0 prediction 0.913787125925304 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58549328 chr19:58549328 nonsynonymous SNV 0.000 3 21 hm5C_associated_SNPs_48846 0 0 0 0 0 exosome 0.500231644117493 0 0.8144998 0.000463288234986869 hm5C_site_4166 DeepMRMD:0.8144998;iRNA_m5C:0.000463288234986869 4167 chr19 49536340 49536340 1 + C T UCEC 49536340 + 49536320 49536360 41 CGCCGCAGCACCACTGACTGCGGGGGTCCCAAGGACCACCC CGCCGCAGCACCACTGACTGTGGGGGTCCCAAGGACCACCC Direct Loss 0.956893132653517 0 0.92462593 0 prediction 0.913786265307035 Functional Loss - CGB2 ENSG00000104818 CDS Human protein_coding chr19:49536340 chr19:49536340 synonymous SNV . 0 21 hm5C_associated_SNPs_48847 0 0 0 0 0 unknown 0.500275673686195 0 0.84925186 0.000551347372389044 hm5C_site_4167 DeepMRMD:0.84925186;iRNA_m5C:0.000551347372389044 4168 chr11 47260392 47260392 1 + C T UCEC 47260392 + 47260372 47260412 41 GCCAGGAGGAAGCCAGGACACGGAAGTGAGAGACACTAAAG GCCAGGAGGAAGCCAGGACATGGAAGTGAGAGACACTAAAG Direct Loss 0.956891978462007 0 0.8232244 0 prediction 0.913783956924014 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47260392 chr11:47260392 nonsynonymous SNV 0.105 2 21 hm5C_associated_SNPs_48848 0 0 1 0 1 Cytosol 0.500231643914414 0 0.6464488 0.000463287828827763 hm5C_site_4168 DeepMRMD:0.6464488;iRNA_m5C:0.000463287828827763 4169 chr5 140481614 140481614 1 + C T LUAD 140481614 + 140481594 140481634 41 TCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCCCGCC TCTCCTACACCCTGTTCGTCTGCGAGAACAACAGCCCCGCC Direct Loss 0.956888224073086 0 0.20070165 0 prediction 0.913776448146172 Functional Loss - PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140481614 chr5:140481614 nonsynonymous SNV 0.805 3 21 hm5C_associated_SNPs_48849 0 0 0 0 0 exosome 0.500231643920834 0 0 0.000463287841667048 hm5C_site_4169 DeepMRMD:0;iRNA_m5C:0.000463287841667048 4170 chr21 33678970 33678970 1 + C A UCEC 33678970 + 33678950 33678990 41 GATTCCATCGTGATCGCATTCTGGGTGAGCCTGGCTGCCTT GATTCCATCGTGATCGCATTATGGGTGAGCCTGGCTGCCTT Direct Loss 0.95687664551271 0 0.9099957 0 prediction 0.91375329102542 Functional Loss - MRAP ENSG00000170262 CDS Human protein_coding chr21:33678970 chr21:33678970 nonsynonymous SNV 0.499 1 21 hm5C_associated_SNPs_48850 0 0 0 0 2 chromatin 0.500231643920995 0 0.8199914 0.000463287841989679 hm5C_site_4170 DeepMRMD:0.8199914;iRNA_m5C:0.000463287841989679 4171 chr1 171761191 171761191 1 + C G rs2232822 171761191 + 171761171 171761211 41 TTGTTGGTGGTAGGCCTGGGCGGGGGCAGCCTCCCCCTCTT TTGTTGGTGGTAGGCCTGGGGGGGGGCAGCCTCCCCCTCTT Direct Loss 0.956861471080915 0 0.93745095 0 prediction 0.91372294216183 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171761191 chr1:171761191 synonymous SNV . 0 21 hm5C_associated_SNPs_48851 0 0 1 0 1 Ribosome 0.500231643921092 0 0.8749019 0.000463287842184856 hm5C_site_4171 DeepMRMD:0.8749019;iRNA_m5C:0.000463287842184856 4172 chr19 10132662 10132662 1 + C T rs2287801 10132662 + 10132642 10132682 41 TTGGCCTGGGAAGCCCAGAGCAGGAAGCCACAGCTGTCTCT TTGGCCTGGGAAGCCCAGAGTAGGAAGCCACAGCTGTCTCT Direct Loss 0.956858026239344 0 0.7179259 0 prediction 0.913716052478689 Functional Loss - RDH8 ENSG00000080511 UTR3 Human protein_coding chr19:10132662 chr19:10132662 . . 0 21 hm5C_associated_SNPs_48852 0 0 0 1 0 unknown 0.500231643921087 0 0.4358518 0.00046328784217331 hm5C_site_4172 DeepMRMD:0.4358518;iRNA_m5C:0.00046328784217331 4173 chr19 9949194 9949194 1 + C T PAAD 9949194 + 9949174 9949214 41 AGCAGCAGTGGTGGCAAAAACGGGCAGGGGGAGCCTGCCAG AGCAGCAGTGGTGGCAAAAATGGGCAGGGGGAGCCTGCCAG Direct Loss 0.956849249313487 0 0.86725086 0 prediction 0.913698498626974 Functional Loss - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9949194 chr19:9949194 synonymous SNV . 0 21 hm5C_associated_SNPs_48853 0 0 1 0 1 Ribosome 0.500231643921092 0 0.73450172 0.000463287842184856 hm5C_site_4173 DeepMRMD:0.73450172;iRNA_m5C:0.000463287842184856 4174 chr10 94828206 94828206 1 + C T CESC 94828206 + 94828186 94828226 41 GCGCAGCGCGCGAAGATTCCCGGGGCGCCTCCAGCCGCTTC GCGCAGCGCGCGAAGATTCCTGGGGCGCCTCCAGCCGCTTC Direct Loss 0.956844544086177 0 0.93980056 0 prediction 0.913689088172355 Functional Loss - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94828206 chr10:94828206 nonsynonymous SNV 0.002 2 21 hm5C_associated_SNPs_48854 0 0 0 0 0 exosome 0.500231644006885 0 0.87960112 0.000463288013770491 hm5C_site_4174 DeepMRMD:0.87960112;iRNA_m5C:0.000463288013770491 4175 chr12 108169133 108169133 1 + C A LUSC 108169133 + 108169113 108169153 41 CTGCGTCTGGACGCCGCGTGCTGGGAGTGGGCGCGCAGCGG CTGCGTCTGGACGCCGCGTGATGGGAGTGGGCGCGCAGCGG Direct Loss 0.956842751577578 0 0.8811758 0 prediction 0.913685503155156 Functional Loss - ASCL4 ENSG00000187855 CDS Human protein_coding chr12:108169133 chr12:108169133 stopgain 0.224 0 21 hm5C_associated_SNPs_48855 0 0 0 0 0 exosome 0.500231646553724 0 0.7623516 0.000463293107447305 hm5C_site_4175 DeepMRMD:0.7623516;iRNA_m5C:0.000463293107447305 4176 chr19 12923992 12923992 1 + C T SKCM 12923992 + 12923972 12924012 41 GGCGCACGGCCCAGACCATCCTGGAGAAAGAGGCGGAAGAT GGCGCACGGCCCAGACCATCTTGGAGAAAGAGGCGGAAGAT Direct Loss 0.956838393831019 0 0.7332769 0 prediction 0.913676787662037 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12923992 chr19:12923992 synonymous SNV . 0 21 hm5C_associated_SNPs_48856 0 0 1 0 2 Ribosome 0.500231611931815 0 0.4665538 0.000463223863630402 hm5C_site_4176 DeepMRMD:0.4665538;iRNA_m5C:0.000463223863630402 4177 chr11 67379625 67379625 1 + C T SKCM 67379625 + 67379605 67379645 41 AACAAGGTGATGGCACGTTTCGTGAGGGGGGATGCCCGGCC AACAAGGTGATGGCACGTTTTGTGAGGGGGGATGCCCGGCC Direct Loss 0.956835556212302 0 0.90863454 0 prediction 0.913671112424605 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67379625 chr11:67379625 synonymous SNV . 0 21 hm5C_associated_SNPs_48857 0 0 1 0 1 Ribosome 0.500231643921092 0 0.81726908 0.000463287842184412 hm5C_site_4177 DeepMRMD:0.81726908;iRNA_m5C:0.000463287842184412 4178 chr12 109288102 109288102 1 + C T BRCA 109288102 + 109288082 109288122 41 TATGGGCTGGGGCGCTACAACGAGACCCCCTGCTGCAGCCA TATGGGCTGGGGCGCTACAATGAGACCCCCTGCTGCAGCCA Direct Loss 0.956834860671401 0 0.88252616 0 prediction 0.913669721342803 Functional Loss - DAO ENSG00000110887 CDS Human protein_coding chr12:109288102 chr12:109288102 stopgain 0.080 1 21 hm5C_associated_SNPs_48858 0 0 0 0 2 Endoplasmic reticulum 0.500231643921188 0 0.76505232 0.000463287842376703 hm5C_site_4178 DeepMRMD:0.76505232;iRNA_m5C:0.000463287842376703 4179 chr1 64102039 64102039 1 + C T OV 64102039 + 64102019 64102059 41 GGCTTTGCACGGAGCATGCCCACGAGTGGTGCTCTGGACCG GGCTTTGCACGGAGCATGCCTACGAGTGGTGCTCTGGACCG Direct Loss 0.956834029235167 0 0.8159325 0 prediction 0.913668058470334 Functional Loss - PGM1 ENSG00000079739 CDS Human protein_coding chr1:64102039 chr1:64102039 synonymous SNV . 0 21 hm5C_associated_SNPs_48859 0 0 1 0 1 Ribosome 0.500231643929621 0 0.631865 0.000463287859242101 hm5C_site_4179 DeepMRMD:0.631865;iRNA_m5C:0.000463287859242101 4180 chrX 129546548 129546548 1 + C G LUAD 129546548 + 129546528 129546568 41 CAAATCCAGGACGGCCTACTCTGGTGGAGCAGAGGACCTAG CAAATCCAGGACGGCCTACTGTGGTGGAGCAGAGGACCTAG Direct Loss 0.956832639682175 0 0.8462782 0 prediction 0.913665279364351 Functional Loss - RBMX2 ENSG00000134597 CDS Human protein_coding chrX:129546548 chrX:129546548 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48860 0 0 1 0 0 exosome 0.500231643921092 0 0.6925564 0.000463287842184856 hm5C_site_4180 DeepMRMD:0.6925564;iRNA_m5C:0.000463287842184856 4181 chr10 35897114 35897114 1 + C T UCEC 35897114 + 35897094 35897134 41 GCAGCCTGCGGCGGCGGATGCGCAGGAGGCCGGGACCCCCC GCAGCCTGCGGCGGCGGATGTGCAGGAGGCCGGGACCCCCC Direct Loss 0.9568321313082 0 0.8584002 0 prediction 0.9136642626164 Functional Loss - GJD4 ENSG00000177291 CDS Human protein_coding chr10:35897114 chr10:35897114 nonsynonymous SNV 0.036 2 21 hm5C_associated_SNPs_48861 0 0 0 0 0 exosome 0.500231690424397 0 0.7168004 0.000463380848793049 hm5C_site_4181 DeepMRMD:0.7168004;iRNA_m5C:0.000463380848793049 4182 chr3 51733461 51733461 1 + C T STAD 51733461 + 51733441 51733481 41 ATCCTCGGCTGGAGATCTACCAGGAAGACCAGATCCATTTC ATCCTCGGCTGGAGATCTACTAGGAAGACCAGATCCATTTC Direct Loss 0.956821736279662 0 0.8891429 0 prediction 0.913643472559325 Functional Loss - TEX264 ENSG00000164081 CDS Human protein_coding chr3:51733461 chr3:51733461 stopgain 0.994 0 21 hm5C_associated_SNPs_48862 0 0 1 0 1 Ribosome 0.500231643921092 0 0.7782858 0.000463287842184856 hm5C_site_4182 DeepMRMD:0.7782858;iRNA_m5C:0.000463287842184856 4183 chr17 16593801 16593801 1 + C T OV 16593801 + 16593781 16593821 41 ACGAGGAAGACCCCTAGCGTCGGGAGCCAGGGGGACCAGTG ACGAGGAAGACCCCTAGCGTTGGGAGCCAGGGGGACCAGTG Direct Loss 0.956812285123788 0 0.9086629 0 prediction 0.913624570247576 Functional Loss - CCDC144A ENSG00000170160;ENSG00000266302 CDS Human other chr17:16593801 chr17:16593801 synonymous SNV . 0 21 hm5C_associated_SNPs_48863 0 0 0 0 0 exosome 0.50023164392109 0 0.8173258 0.000463287842180637 hm5C_site_4183 DeepMRMD:0.8173258;iRNA_m5C:0.000463287842180637 4184 chr2 3691331 3691331 1 + C A LUAD 3691331 + 3691311 3691351 41 CCACAGCTGTCGCCGGTGTGCGCGAGACGGAGAGCAAGATC CCACAGCTGTCGCCGGTGTGAGCGAGACGGAGAGCAAGATC Direct Loss 0.956808578013933 0 0.8774905 0 prediction 0.913617156027867 Functional Loss - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3691331 chr2:3691331 nonsynonymous SNV 0.093 4 21 hm5C_associated_SNPs_48864 0 0 0 0 1 membrane 0.500231643921193 0 0.754981 0.000463287842386029 hm5C_site_4184 DeepMRMD:0.754981;iRNA_m5C:0.000463287842386029 4185 chr6 30314294 30314294 1 + C A OV 30314294 + 30314274 30314314 41 AATGATCCCGGGCATTTACTCTGGGGAGACAGGCCTGAGGC AATGATCCCGGGCATTTACTATGGGGAGACAGGCCTGAGGC Direct Loss 0.95680468845236 0 0.88767797 0 prediction 0.913609376904719 Functional Loss - RPP21;TRIM39-RPP21 ENSG00000241370;ENSG00000248167 CDS Human other chr6:30314294 chr6:30314294 synonymous SNV . 0 21 hm5C_associated_SNPs_48865 0 0 1 0 3 unknown 0.500231643921092 0 0.77535594 0.000463287842184856 hm5C_site_4185 DeepMRMD:0.77535594;iRNA_m5C:0.000463287842184856 4186 chr20 17462523 17462523 1 + C A LUSC 17462523 + 17462503 17462543 41 ACCCTGGAGCTGGGATTTGTCGGCAGCGCCCCGCAGAAGGG ACCCTGGAGCTGGGATTTGTAGGCAGCGCCCCGCAGAAGGG Direct Loss 0.956804008572956 0 0.81536126 0 prediction 0.913608017145913 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17462523 chr20:17462523 synonymous SNV . 0 21 hm5C_associated_SNPs_48866 0 0 0 0 0 Endoplasmic reticulum 0.50023164393404 0 0.63072252 0.000463287868080808 hm5C_site_4186 DeepMRMD:0.63072252;iRNA_m5C:0.000463287868080808 4187 chr19 1106674 1106674 1 + C T rs113282777 1106674 + 1106654 1106694 41 ACCTGCTGGTGGGGCAGACCCGAAAATCCAGCGTGCACCCC ACCTGCTGGTGGGGCAGACCTGAAAATCCAGCGTGCACCCC Direct Loss 0.956792342793394 0 0.8979721 0 prediction 0.913584685586789 Functional Loss - GPX4 ENSG00000167468 CDS Human protein_coding chr19:1106674 chr19:1106674 stopgain 0.012 0 21 hm5C_associated_SNPs_48867 0 0 1 0 0 Cytosol 0.500231581383097 0 0.7959442 0.000463162766193959 hm5C_site_4187 DeepMRMD:0.7959442;iRNA_m5C:0.000463162766193959 4188 chr22 50278356 50278356 1 + C T COAD 50278356 + 50278336 50278376 41 GAACGGGGGCACGGGCATCCCGCCACTGTACTCCACCCCTC GAACGGGGGCACGGGCATCCTGCCACTGTACTCCACCCCTC Direct Loss 0.956773787182509 0 0.29904783 0 prediction 0.913547574365018 Functional Loss - ZBED4 ENSG00000100426 CDS Human protein_coding chr22:50278356 chr22:50278356 nonsynonymous SNV 0.019 4 21 hm5C_associated_SNPs_48868 0 0 1 0 0 chromatin 0.50023145277569 0 0 0.000462905551379178 hm5C_site_4188 DeepMRMD:0;iRNA_m5C:0.000462905551379178 4189 chr12 5021032 5021032 1 + C T UCEC 5021032 + 5021012 5021052 41 CTTCGAGTACCCCGAGAGCTCGGGGCCCGCCAGGGTCATCG CTTCGAGTACCCCGAGAGCTTGGGGCCCGCCAGGGTCATCG Direct Loss 0.956772182701115 0 0.9285704 0 prediction 0.913544365402231 Functional Loss - KCNA1 ENSG00000111262 CDS Human protein_coding chr12:5021032 chr12:5021032 nonsynonymous SNV 0.975 4 21 hm5C_associated_SNPs_48869 0 0 0 0 0 unknown 0.500231643914514 0 0.8571408 0.000463287829027381 hm5C_site_4189 DeepMRMD:0.8571408;iRNA_m5C:0.000463287829027381 4190 chr15 41105019 41105019 1 + C T UCEC 41105019 + 41104999 41105039 41 CTGAGGCAGCACTTGAGTTGCGGGAGGAGAACACGAGGCAG CTGAGGCAGCACTTGAGTTGTGGGAGGAGAACACGAGGCAG Direct Loss 0.956768126011055 0 0.9169669 0 prediction 0.91353625202211 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105019 chr15:41105019 nonsynonymous SNV 0.870 3 21 hm5C_associated_SNPs_48870 0 0 0 0 1 Ribosome 0.500231645703885 0 0.8339338 0.000463291407769129 hm5C_site_4190 DeepMRMD:0.8339338;iRNA_m5C:0.000463291407769129 4191 chr20 45717954 45717954 1 + C A rs866937 45717954 + 45717934 45717974 41 AGGCCGCACCGGGCCTCCGACGGGAAGCTCCGAGGCCGGTC AGGCCGCACCGGGCCTCCGAAGGGAAGCTCCGAGGCCGGTC Direct Loss 0.956767579236474 0 0.8832531 0 prediction 0.913535158472947 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45717954 chr20:45717954 nonsynonymous SNV 0.865 1 21 hm5C_associated_SNPs_48871 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0 0.7665062 0.000463287842184856 hm5C_site_4191 DeepMRMD:0.7665062;iRNA_m5C:0.000463287842184856 4192 chr1 9017275 9017275 1 + C A LUSC 9017275 + 9017255 9017295 41 GCCCAGCAGATGCACTTTCACTGGGGAGGTGCGTCCTCGGA GCCCAGCAGATGCACTTTCAATGGGGAGGTGCGTCCTCGGA Direct Loss 0.956765525793666 0 0.5184872 0 prediction 0.913531051587332 Functional Loss - CA6 ENSG00000131686 CDS Human protein_coding chr1:9017275 chr1:9017275 nonsynonymous SNV 0.622 4 21 hm5C_associated_SNPs_48872 0 0 0 0 2 exosome 0.500239438626833 0 0.0369744000000001 0.000478877253665466 hm5C_site_4192 DeepMRMD:0.0369744000000001;iRNA_m5C:0.000478877253665466 4193 chr1 51439912 51439912 1 + C T rs2500450 51439912 + 51439892 51439932 41 GTTAGCCTGATGCAGGCAAACGGGGCTGGGGGAGCCACAAA GTTAGCCTGATGCAGGCAAATGGGGCTGGGGGAGCCACAAA Direct Loss 0.956758056140057 0 0.8991387 0 prediction 0.913516112280114 Functional Loss - CDKN2C ENSG00000123080 CDS Human protein_coding chr1:51439912 chr1:51439912 synonymous SNV . 0 21 hm5C_associated_SNPs_48873 0 0 1 0 0 Cytosol 0.500231643921092 0 0.7982774 0.000463287842184856 hm5C_site_4193 DeepMRMD:0.7982774;iRNA_m5C:0.000463287842184856 4194 chr16 29827954 29827954 1 + C T LGG 29827954 + 29827934 29827974 41 GCTCTGGCCGTGGAGGATACCGGAGGCCCCTCTGCCTCGGC GCTCTGGCCGTGGAGGATACTGGAGGCCCCTCTGCCTCGGC Direct Loss 0.95674857396678 0 0.9380291 0 prediction 0.91349714793356 Functional Loss - PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29827954 chr16:29827954 synonymous SNV . 0 21 hm5C_associated_SNPs_48874 0 0 1 0 0 Ribosome 0.500231644028417 0 0.8760582 0.00046328805683471 hm5C_site_4194 DeepMRMD:0.8760582;iRNA_m5C:0.00046328805683471 4195 chr6 26502044 26502044 1 + C T BLCA 26502044 + 26502024 26502064 41 ACGCTGGTCCAGGACGGCATCGCCAAGGGGCGCGTGGCCTT ACGCTGGTCCAGGACGGCATTGCCAAGGGGCGCGTGGCCTT Direct Loss 0.956721981470887 0 0.8817445 0 prediction 0.913443962941774 Functional Loss - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26502044 chr6:26502044 synonymous SNV . 0 21 hm5C_associated_SNPs_48875 0 0 0 0 0 nucleoplasm 0.500231643922116 0 0.763489 0.000463287844232774 hm5C_site_4195 DeepMRMD:0.763489;iRNA_m5C:0.000463287844232774 4196 chr15 32460293 32460293 1 + C T CESC 32460293 + 32460273 32460313 41 GCGCCGCCGCCCGCCAGCAACGGGAACCTGCTGTACATCGG GCGCCGCCGCCCGCCAGCAATGGGAACCTGCTGTACATCGG Direct Loss 0.956712137198707 0 0.8014902 0 prediction 0.913424274397415 Functional Loss - CHRNA7 ENSG00000175344 CDS Human protein_coding chr15:32460293 chr15:32460293 synonymous SNV . 0 21 hm5C_associated_SNPs_48876 0 0 0 0 0 Nucleus 0.500231643933432 0 0.6029804 0.000463287866864004 hm5C_site_4196 DeepMRMD:0.6029804;iRNA_m5C:0.000463287866864004 4197 chr7 150069682 150069682 1 + G A HNSC 150069682 - 150069662 150069702 41 GCCGATCGGGGGCGTGGTCGCGCCGATGCGCCGCCAGATGG GCCGATCGGGGGCGTGGTCGTGCCGATGCGCCGCCAGATGG Direct Loss 0.956706285365326 0 0.6603575 0 prediction 0.913412570730653 Functional Loss - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150069682 chr7:150069682 nonsynonymous SNV 0.983 3 21 hm5C_associated_SNPs_48877 0 0 0 0 0 Endoplasmic reticulum 0.500231641183761 0 0.320715 0.000463282367522133 hm5C_site_4197 DeepMRMD:0.320715;iRNA_m5C:0.000463282367522133 4198 chr7 150439867 150439867 1 + C T COAD 150439867 + 150439847 150439887 41 TTGAGAGGCTGGGGAGGGAGCGAGAGGGCTCCTTCCACAGC TTGAGAGGCTGGGGAGGGAGTGAGAGGGCTCCTTCCACAGC Direct Loss 0.956688261717223 0 0.9034322 0 prediction 0.913376523434446 Functional Loss - GIMAP1-GIMAP5;GIMAP5 ENSG00000196329 CDS Human protein_coding chr7:150439867 chr7:150439867 stopgain 0.000 0 21 hm5C_associated_SNPs_48878 0 0 0 0 0 unknown 0.500231664130361 0 0.8068644 0.00046332826072204 hm5C_site_4198 DeepMRMD:0.8068644;iRNA_m5C:0.00046332826072204 4199 chr1 32502610 32502610 1 + C T UCEC 32502610 + 32502590 32502630 41 GTGGGGTGCCAGTGAGAGGCCGGGGAGCTGCACCTCCTCCA GTGGGGTGCCAGTGAGAGGCTGGGGAGCTGCACCTCCTCCA Direct Loss 0.956677568381281 0 0.94082344 0 prediction 0.913355136762563 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502610 chr1:32502610 nonsynonymous SNV 0.954 1 21 hm5C_associated_SNPs_48879 0 0 1 0 2 Nucleus 0.500231643921612 0 0.88164688 0.000463287843224913 hm5C_site_4199 DeepMRMD:0.88164688;iRNA_m5C:0.000463287843224913 4200 chr1 22973914 22973914 1 + C T UCEC 22973914 + 22973894 22973934 41 AGTCAGTGTTCACGGTCACTCGGCAGACCCACCAGCCCCCT AGTCAGTGTTCACGGTCACTTGGCAGACCCACCAGCCCCCT Direct Loss 0.95667404410113 0 0.8977308 0 prediction 0.91334808820226 Functional Loss - C1QC ENSG00000159189 CDS Human protein_coding chr1:22973914 chr1:22973914 nonsynonymous SNV 0.348 4 21 hm5C_associated_SNPs_48880 0 0 0 0 0 Cytosol 0.500231643921092 0 0.7954616 0.000463287842184856 hm5C_site_4200 DeepMRMD:0.7954616;iRNA_m5C:0.000463287842184856 4201 chr20 36965602 36965602 1 + C T rs376454204 36965602 + 36965582 36965622 41 AATGAAGGCACCAGGGGTGCCGGGGGCTGTCAGCCACACCT AATGAAGGCACCAGGGGTGCTGGGGGCTGTCAGCCACACCT Direct Loss 0.956669230989982 0 0.90513706 0 prediction 0.913338461979964 Functional Loss - BPI ENSG00000101425 UTR3 Human protein_coding chr20:36965602 chr20:36965602 . . 0 21 hm5C_associated_SNPs_48881 0 0 0 0 1 Nucleus 0.500231643921092 0 0.81027412 0.000463287842184856 hm5C_site_4201 DeepMRMD:0.81027412;iRNA_m5C:0.000463287842184856 4202 chr19 17973794 17973794 1 + C G rs141247185 17973794 + 17973774 17973814 41 ATCATGAAGGTGGAGGAGATCGCGGCCAGCAAGTGCCGCCG ATCATGAAGGTGGAGGAGATGGCGGCCAGCAAGTGCCGCCG Direct Loss 0.956665339365865 0 0.90580285 0 prediction 0.91333067873173 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17973794 chr19:17973794 nonsynonymous SNV 0.942 2 21 hm5C_associated_SNPs_48882 0 0 0 0 2 Cytosol 0.500231643921093 0 0.8116057 0.000463287842185078 hm5C_site_4202 DeepMRMD:0.8116057;iRNA_m5C:0.000463287842185078 4203 chrX 151909281 151909281 1 + C G rs2515849 151909281 + 151909261 151909301 41 GCCACTCTGACCAGCCGAACCAGGAACTCAATCAAAATGCG GCCACTCTGACCAGCCGAACGAGGAACTCAATCAAAATGCG Direct Loss 0.956661517231225 0 0.87057036 0 prediction 0.91332303446245 Functional Loss - CSAG1 ENSG00000198930 UTR3 Human protein_coding chrX:151909281 chrX:151909281 . . 0 21 hm5C_associated_SNPs_48883 0 0 0 0 0 Ribosome 0.500231643907046 0 0.74114072 0.000463287814091995 hm5C_site_4203 DeepMRMD:0.74114072;iRNA_m5C:0.000463287814091995 4204 chr19 3613305 3613305 1 + C T HNSC 3613305 + 3613285 3613325 41 GCCGTCCACCTCGGCCTCCGCGGGGCCGCCCTCCGAGGAGG GCCGTCCACCTCGGCCTCCGTGGGGCCGCCCTCCGAGGAGG Direct Loss 0.956639833974763 0 0.945313 0 prediction 0.913279667949526 Functional Loss - CACTIN ENSG00000105298 CDS Human protein_coding chr19:3613305 chr19:3613305 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48884 0 0 0 0 0 Ribosome 0.500231643863035 0 0.890626 0.000463287726069961 hm5C_site_4204 DeepMRMD:0.890626;iRNA_m5C:0.000463287726069961 4205 chr7 134925343 134925343 1 + C T LUAD 134925343 + 134925323 134925363 41 CCCAGCTGCCAGCACAGCTGCAGGAGCTTGAGCATCGGGTG CCCAGCTGCCAGCACAGCTGTAGGAGCTTGAGCATCGGGTG Direct Loss 0.95663702047099 0 0.8906667 0 prediction 0.913274040941979 Functional Loss - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134925343 chr7:134925343 stopgain 0.169 0 21 hm5C_associated_SNPs_48885 0 0 0 0 1 exosome 0.500229535433139 0 0.7813334 0.000459070866278166 hm5C_site_4205 DeepMRMD:0.7813334;iRNA_m5C:0.000459070866278166 4206 chr16 30594387 30594387 1 + G T GBM 30594387 - 30594367 30594407 41 CCGACTGCGGGCGCCGCTTCCGCCAGAGGGGTTCCCTGGCT CCGACTGCGGGCGCCGCTTCAGCCAGAGGGGTTCCCTGGCT Direct Loss 0.956614640732778 0 0.90596604 0 prediction 0.913229281465556 Functional Loss - ZNF785 ENSG00000197162 CDS Human protein_coding chr16:30594387 chr16:30594387 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_48886 0 0 0 0 0 Nucleus 0.500231643921072 0 0.81193208 0.000463287842144888 hm5C_site_4206 DeepMRMD:0.81193208;iRNA_m5C:0.000463287842144888 4207 chr4 187074851 187074851 1 + C A BRCA 187074851 + 187074831 187074871 41 ACAAAGGCGTCCAGCATTTCCAGGGCAGCACTCCTGCCTCC ACAAAGGCGTCCAGCATTTCAAGGGCAGCACTCCTGCCTCC Direct Loss 0.956606031268541 0 0.9189499 0 prediction 0.913212062537083 Functional Loss - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187074851 chr4:187074851 nonsynonymous SNV 0.495 1 21 hm5C_associated_SNPs_48887 0 0 0 0 0 Cytosol 0.500231643921812 0 0.8378998 0.000463287843623261 hm5C_site_4207 DeepMRMD:0.8378998;iRNA_m5C:0.000463287843623261 4208 chr17 7465479 7465479 1 + C T rs543387051 7465479 + 7465459 7465499 41 ACGGCTGCGCCTAAAGACAGCAGGAGTGGCGGGGCCGCCGC ACGGCTGCGCCTAAAGACAGTAGGAGTGGCGGGGCCGCCGC Direct Loss 0.956601962013024 0 0.87484217 0 prediction 0.913203924026049 Functional Loss - SENP3-EIF4A1 ENSG00000161956 UTR5 Human protein_coding chr17:7465479 chr17:7465479 . . 0 21 hm5C_associated_SNPs_48888 0 0 1 0 0 exosome 0.500231643921096 0 0.74968434 0.00046328784219285 hm5C_site_4208 DeepMRMD:0.74968434;iRNA_m5C:0.00046328784219285 4209 chr8 24771772 24771772 1 + G A STAD 24771772 - 24771752 24771792 41 CTCCAGGGTGGCGCGCAGCTCGCGGATCTCCTGGTCGTACG CTCCAGGGTGGCGCGCAGCTTGCGGATCTCCTGGTCGTACG Direct Loss 0.956598003086699 0 0.9131174 0 prediction 0.913196006173399 Functional Loss - NEFM ENSG00000104722 CDS Human protein_coding chr8:24771772 chr8:24771772 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_48889 0 0 0 0 0 exosome 0.500231643921095 0 0.8262348 0.000463287842189297 hm5C_site_4209 DeepMRMD:0.8262348;iRNA_m5C:0.000463287842189297 4210 chr7 53103409 53103409 1 + C T SKCM 53103409 + 53103389 53103429 41 TCCGCAGACCTCGGGAACTTCTGGAAGGCGGGAGAACCCCT TCCGCAGACCTCGGGAACTTTTGGAAGGCGGGAGAACCCCT Direct Loss 0.956578471370939 0 0.8990307 0 prediction 0.913156942741879 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103409 chr7:53103409 synonymous SNV . 0 21 hm5C_associated_SNPs_48890 0 0 0 0 0 unknown 0.500231643921107 0 0.7980614 0.0004632878422135 hm5C_site_4210 DeepMRMD:0.7980614;iRNA_m5C:0.0004632878422135 4211 chr7 143807186 143807186 1 + C G rs73728207 143807186 + 143807166 143807206 41 GGTTGCCCTTCTGTGGGCCCCGGGATGTGAACCACCTCTTC GGTTGCCCTTCTGTGGGCCCGGGGATGTGAACCACCTCTTC Direct Loss 0.956556058036886 0 0.87871 0 prediction 0.913112116073772 Functional Loss - OR2A2 ENSG00000221989 CDS Human protein_coding chr7:143807186 chr7:143807186 nonsynonymous SNV 0.024 1 21 hm5C_associated_SNPs_48891 0 0 0 0 0 unknown 0.50023164634391 0 0.75742 0.000463292687820305 hm5C_site_4211 DeepMRMD:0.75742;iRNA_m5C:0.000463292687820305 4212 chr22 24837262 24837262 1 + C T rs4991 24837262 + 24837242 24837282 41 CCGCCAGGAGTGTGGGCCAACGGCAGTGCTCCCCACCCTGA CCGCCAGGAGTGTGGGCCAATGGCAGTGCTCCCCACCCTGA Direct Loss 0.956555068122539 0 0.74430084 0 prediction 0.913110136245078 Functional Loss - ADORA2A ENSG00000128271 CDS Human protein_coding chr22:24837262 chr22:24837262 synonymous SNV . 0 21 hm5C_associated_SNPs_48892 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.48860168 0.000463287842184856 hm5C_site_4212 DeepMRMD:0.48860168;iRNA_m5C:0.000463287842184856 4213 chr3 5229991 5229991 1 + C T rs201295523 5229991 + 5229971 5230011 41 CGCGGCCGTGGGCCCGACCGCGGGGACCCGTGAGTAGCCCC CGCGGCCGTGGGCCCGACCGTGGGGACCCGTGAGTAGCCCC Direct Loss 0.956553999316456 0 0.90144837 0 prediction 0.913107998632912 Functional Loss - EDEM1 ENSG00000134109 CDS Human protein_coding chr3:5229991 chr3:5229991 synonymous SNV . 0 21 hm5C_associated_SNPs_48893 0 0 1 0 1 Ribosome 0.500194193477677 0 0.80289674 0.000388386955354703 hm5C_site_4213 DeepMRMD:0.80289674;iRNA_m5C:0.000388386955354703 4214 chr2 45169453 45169453 1 + C T HNSC 45169453 + 45169433 45169473 41 GGCGGCGGCGGCGGCGGCTCCAGGGCCCCCCCGGAAGAGTT GGCGGCGGCGGCGGCGGCTCTAGGGCCCCCCCGGAAGAGTT Direct Loss 0.956545937385226 0 0.9147743 0 prediction 0.913091874770452 Functional Loss - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45169453 chr2:45169453 synonymous SNV . 0 21 hm5C_associated_SNPs_48894 0 0 0 0 0 exosome 0.500231643921092 0 0.8295486 0.000463287842184856 hm5C_site_4214 DeepMRMD:0.8295486;iRNA_m5C:0.000463287842184856 4215 chr22 50655822 50655822 1 + C T rs2272853 50655822 + 50655802 50655842 41 CCTCGGCACGCTCCACACCCCTGGAGTCTCCCGAGGCCCCC CCTCGGCACGCTCCACACCCTTGGAGTCTCCCGAGGCCCCC Direct Loss 0.956543707880731 0 0.19153452 0 prediction 0.913087415761463 Functional Loss - SELENOO ENSG00000073169 UTR3 Human protein_coding chr22:50655822 chr22:50655822 . . 0 21 hm5C_associated_SNPs_48895 0 0 1 0 0 Nucleus 0.500220978085293 0 0 0.000441956170585955 hm5C_site_4215 DeepMRMD:0;iRNA_m5C:0.000441956170585955 4216 chr21 45877172 45877172 1 + C T SKCM 45877172 + 45877152 45877192 41 GTCACCATGTTCGGCTGGTTCGCCATGGTGATCGCCTACGT GTCACCATGTTCGGCTGGTTTGCCATGGTGATCGCCTACGT Direct Loss 0.956538109076752 0 0.1760078 0 prediction 0.913076218153504 Functional Loss - LRRC3 ENSG00000160233 CDS Human protein_coding chr21:45877172 chr21:45877172 synonymous SNV . 0 21 hm5C_associated_SNPs_48896 0 0 0 0 0 exosome 0.500232574693577 0 0 0.000465149387154362 hm5C_site_4216 DeepMRMD:0;iRNA_m5C:0.000465149387154362 4217 chr2 233899475 233899475 1 + C T CESC 233899475 + 233899455 233899495 41 CAGCTTCCCCAGCCCCCGCTCGGGGCCTGGCTCCCCAGCCC CAGCTTCCCCAGCCCCCGCTTGGGGCCTGGCTCCCCAGCCC Direct Loss 0.956536723910209 0 0.96675277 0 prediction 0.913073447820418 Functional Loss - NEU2 ENSG00000115488 CDS Human protein_coding chr2:233899475 chr2:233899475 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_48897 0 0 0 0 0 exosome 0.500231643921092 0 0.93350554 0.000463287842184856 hm5C_site_4217 DeepMRMD:0.93350554;iRNA_m5C:0.000463287842184856 4218 chr19 7832468 7832468 1 + C T SKCM 7832468 + 7832448 7832488 41 TGGGACTTTCAGACCTAAATCAGGAAGGCACGTGGCAATGG TGGGACTTTCAGACCTAAATTAGGAAGGCACGTGGCAATGG Direct Loss 0.956530354688514 0 0.8867755 0 prediction 0.913060709377029 Functional Loss - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7832468 chr19:7832468 stopgain 0.004 0 21 hm5C_associated_SNPs_48898 0 0 0 0 2 exosome 0.500231643921092 0 0.773551 0.000463287842184856 hm5C_site_4218 DeepMRMD:0.773551;iRNA_m5C:0.000463287842184856 4219 chr19 49983704 49983704 1 + C T rs368101323 49983704 + 49983684 49983724 41 GCCTGCACTGGCAGAGGACGCGGCGGAGGACACCCCGCCCT GCCTGCACTGGCAGAGGACGTGGCGGAGGACACCCCGCCCT Direct Loss 0.956527122903945 0 0.92287064 0 prediction 0.91305424580789 Functional Loss - FLT3LG ENSG00000090554 CDS Human protein_coding chr19:49983704 chr19:49983704 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48899 0 0 1 0 1 Endoplasmic reticulum 0.500231644149342 0 0.84574128 0.000463288298684361 hm5C_site_4219 DeepMRMD:0.84574128;iRNA_m5C:0.000463288298684361 4220 chr1 114455768 114455768 1 + C T rs536400357 114455768 + 114455748 114455788 41 GAGACCAAGGAGCCAGCTGGCGGGAAGGGGTGGGGGTGTGC GAGACCAAGGAGCCAGCTGGTGGGAAGGGGTGGGGGTGTGC Direct Loss 0.956522479526898 0 0.83333933 0 prediction 0.913044959053796 Functional Loss - DCLRE1B ENSG00000118655 UTR3 Human protein_coding chr1:114455768 chr1:114455768 . . 0 21 hm5C_associated_SNPs_48900 0 0 1 0 0 chromatin 0.500231644446858 0 0.66667866 0.000463288893715941 hm5C_site_4220 DeepMRMD:0.66667866;iRNA_m5C:0.000463288893715941 4221 chrX 152036194 152036194 1 + C T BRCA 152036194 + 152036174 152036214 41 TGGCGGCAGAGCAGCTCTCCCGAGACTCGACACTGGGTGGG TGGCGGCAGAGCAGCTCTCCTGAGACTCGACACTGGGTGGG Direct Loss 0.956521449878214 0 0.834633 0 prediction 0.913042899756428 Functional Loss - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152036194 chrX:152036194 stopgain 0.243 0 21 hm5C_associated_SNPs_48901 0 0 1 0 2 Ribosome 0.500231640432463 0 0.669266 0.000463280864926974 hm5C_site_4221 DeepMRMD:0.669266;iRNA_m5C:0.000463280864926974 4222 chr1 152671682 152671682 1 + C T SKCM 152671682 + 152671662 152671702 41 CTCTGGCTGCTGCCACAGCTCTGGGGACTGCTGCTGACCAG CTCTGGCTGCTGCCACAGCTTTGGGGACTGCTGCTGACCAG Direct Loss 0.956519823294836 0 0.8975377 0 prediction 0.913039646589672 Functional Loss - LCE2A ENSG00000187173 CDS Human protein_coding chr1:152671682 chr1:152671682 nonsynonymous SNV 0.807 3 21 hm5C_associated_SNPs_48902 0 0 0 0 0 unknown 0.500231643921063 0 0.7950754 0.000463287842126014 hm5C_site_4222 DeepMRMD:0.7950754;iRNA_m5C:0.000463287842126014 4223 chr19 44740715 44740715 1 + C T STAD 44740715 + 44740695 44740735 41 CCATCATCAGAGGGTCCACACGGGAGAGAAACCCCATATAT CCATCATCAGAGGGTCCACATGGGAGAGAAACCCCATATAT Direct Loss 0.956501689010436 0 0.8836077 0 prediction 0.913003378020873 Functional Loss - ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44740715 chr19:44740715 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_48903 0 0 1 0 0 cytosol 0.500231643899983 0 0.7672154 0.000463287799965961 hm5C_site_4223 DeepMRMD:0.7672154;iRNA_m5C:0.000463287799965961 4224 chr20 31017811 31017811 1 + C T BLCA 31017811 + 31017791 31017831 41 GTGGCCAGGCCGAGGTCACCCAGGACCCTGCCCCGCTCCTG GTGGCCAGGCCGAGGTCACCTAGGACCCTGCCCCGCTCCTG Direct Loss 0.956495262081284 0 0.88383317 0 prediction 0.912990524162567 Functional Loss - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31017811 chr20:31017811 stopgain 0.992 0 21 hm5C_associated_SNPs_48904 0 0 1 0 1 Nucleus 0.500231643921093 0 0.76766634 0.000463287842185078 hm5C_site_4224 DeepMRMD:0.76766634;iRNA_m5C:0.000463287842185078 4225 chr7 2472599 2472599 1 + C A rs17132395 2472599 + 2472579 2472619 41 GAGGCTACGACTGGTCCCCGCGCGACGCCCGGCGCAGCCCA GAGGCTACGACTGGTCCCCGAGCGACGCCCGGCGCAGCCCA Direct Loss 0.956494511604107 0 0.6652822 0 prediction 0.912989023208214 Functional Loss - CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472599 chr7:2472599 nonsynonymous SNV 0.035 0 21 hm5C_associated_SNPs_48905 0 0 0 0 0 nucleolus 0.500231643921098 0 0.3305644 0.000463287842196625 hm5C_site_4225 DeepMRMD:0.3305644;iRNA_m5C:0.000463287842196625 4226 chr9 130965893 130965893 1 + C G LUAD 130965893 + 130965873 130965913 41 GCCGGCAAGAGCTCGGTGCTCGAGAATTTCGTAGGCAGGTA GCCGGCAAGAGCTCGGTGCTGGAGAATTTCGTAGGCAGGTA Direct Loss 0.956489584886111 0 0.86215866 0 prediction 0.912979169772223 Functional Loss - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130965893 chr9:130965893 synonymous SNV . 0 21 hm5C_associated_SNPs_48906 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0 0.72431732 0.000463287842184856 hm5C_site_4226 DeepMRMD:0.72431732;iRNA_m5C:0.000463287842184856 4227 chr15 41523608 41523608 1 + C T PRAD 41523608 + 41523588 41523628 41 CTCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAG CTCGGGCCTCCACGTTACTGTGGGACGAAGAGCTCGAGGAG Direct Loss 0.956474725851944 0 0.89975286 0 prediction 0.912949451703888 Functional Loss - CHP1 ENSG00000187446 CDS Human protein_coding chr15:41523608 chr15:41523608 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48907 0 0 1 0 1 Ribosome 0.500231643921092 0 0.79950572 0.000463287842184856 hm5C_site_4227 DeepMRMD:0.79950572;iRNA_m5C:0.000463287842184856 4228 chr22 44392333 44392333 1 + C T rs115108392 44392333 + 44392313 44392353 41 CCATGCCACACACCGTCTCTCGAGGAAACGCGGTTCAGCGA CCATGCCACACACCGTCTCTTGAGGAAACGCGGTTCAGCGA Direct Loss 0.956472834136074 0 0.91290915 0 prediction 0.912945668272147 Functional Loss - SAMM50 ENSG00000100347 UTR3 Human protein_coding chr22:44392333 chr22:44392333 . . 0 21 hm5C_associated_SNPs_48908 0 0 1 0 0 Cytosol 0.500231643942864 0 0.8258183 0.000463287885727803 hm5C_site_4228 DeepMRMD:0.8258183;iRNA_m5C:0.000463287885727803 4229 chrX 2951149 2951149 1 + C A STAD 2951149 + 2951129 2951169 41 GAGTGGAATATGTTCATGTTCGGGGGATGTAACCTACCACG GAGTGGAATATGTTCATGTTAGGGGGATGTAACCTACCACG Direct Loss 0.956465898231392 0 0.9500754 0 prediction 0.912931796462783 Functional Loss - ARSH ENSG00000205667 CDS Human protein_coding chrX:2951149 chrX:2951149 stopgain 0.003 0 21 hm5C_associated_SNPs_48909 0 0 0 0 1 exosome 0.500231643921092 0 0.9001508 0.000463287842184856 hm5C_site_4229 DeepMRMD:0.9001508;iRNA_m5C:0.000463287842184856 4230 chr11 67376950 67376950 1 + C T rs199702939 67376950 + 67376930 67376970 41 TATCTGGTGGTGAACGCAGACGAGGGGGAGCCGGGCACCTG TATCTGGTGGTGAACGCAGATGAGGGGGAGCCGGGCACCTG Direct Loss 0.956438039497226 0 0.8799412 0 prediction 0.912876078994452 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376950 chr11:67376950 synonymous SNV . 0 21 hm5C_associated_SNPs_48910 1 0 1 0 1 Ribosome 0.500231647514549 0 0.7598824 0.000463295029097921 hm5C_site_4230 DeepMRMD:0.7598824;iRNA_m5C:0.000463295029097921 not specified not specified 4231 chr4 48485965 48485965 1 + C T BLCA 48485965 + 48485945 48485985 41 ACGGTGGACGTGAACCACTTCGGGGCGCACGTCCGTCGGCC ACGGTGGACGTGAACCACTTTGGGGCGCACGTCCGTCGGCC Direct Loss 0.956437554156153 0 0.90172255 0 prediction 0.912875108312306 Functional Loss - SLC10A4 ENSG00000145248 CDS Human protein_coding chr4:48485965 chr4:48485965 synonymous SNV . 0 21 hm5C_associated_SNPs_48911 0 0 0 0 0 exosome 0.500231643920699 0 0.8034451 0.000463287841398152 hm5C_site_4231 DeepMRMD:0.8034451;iRNA_m5C:0.000463287841398152 4232 chr17 12693074 12693074 1 + C T rs564646579 12693074 + 12693054 12693094 41 GTCGCCCGGGAGGCTCCGCGCGGGAGCCATGTAACCCTGCG GTCGCCCGGGAGGCTCCGCGTGGGAGCCATGTAACCCTGCG Direct Loss 0.956411241270054 0 0.90361387 0 prediction 0.912822482540108 Functional Loss - LOC100128006 ENSG00000265489 ncRNA_intronic Human antisense chr17:12693074 chr17:12693074 . . 0 21 hm5C_associated_SNPs_48912 0 0 0 0 0 unknown 0.500231644413966 0 0.80722774 0.000463288827931452 hm5C_site_4232 DeepMRMD:0.80722774;iRNA_m5C:0.000463288827931452 4233 chr20 4680289 4680289 1 + C T COAD 4680289 + 4680269 4680309 41 AGCAGGCCCATCATACATTTCGGCAGTGACTATGAGGACCG AGCAGGCCCATCATACATTTTGGCAGTGACTATGAGGACCG Direct Loss 0.956392261630081 0 0.2364712 0 prediction 0.912784523260162 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680289 chr20:4680289 synonymous SNV . 0 21 hm5C_associated_SNPs_48913 0 0 1 0 1 Ribosome 0.500231684332874 0 0 0.000463368665747588 hm5C_site_4233 DeepMRMD:0;iRNA_m5C:0.000463368665747588 4234 chr7 29725037 29725037 1 + C T rs535498682 29725037 + 29725017 29725057 41 GCGCGGGAGACGAGGAGACGCGGAGAAGAAGGTGTCCCGGC GCGCGGGAGACGAGGAGACGTGGAGAAGAAGGTGTCCCGGC Direct Loss 0.956382230928216 0 0.9237969 0 prediction 0.912764461856432 Functional Loss - DPY19L2P3;ZNRF2P2 ENSG00000227855 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:29725037 chr7:29725037 . . 0 21 hm5C_associated_SNPs_48914 0 0 0 0 0 unknown 0.500231644272148 0 0.8475938 0.000463288544295892 hm5C_site_4234 DeepMRMD:0.8475938;iRNA_m5C:0.000463288544295892 4235 chr17 7612771 7612771 1 + C T THCA 7612771 + 7612751 7612791 41 GGGATAGCTCTGCGGGGTGGCGGGGCTGCAGATCCCCCCTT GGGATAGCTCTGCGGGGTGGTGGGGCTGCAGATCCCCCCTT Direct Loss 0.956372420554902 0 0.9313972 0 prediction 0.912744841109803 Functional Loss - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7612771 chr17:7612771 synonymous SNV . 0 21 hm5C_associated_SNPs_48915 0 0 1 0 0 exosome 0.500231643921092 0 0.8627944 0.000463287842184856 hm5C_site_4235 DeepMRMD:0.8627944;iRNA_m5C:0.000463287842184856 4236 chr17 77685585 77685585 1 + C G rs567133637 77685585 + 77685565 77685605 41 GCTTCCATTTGCAGGAGACACGGGGCGAGGCGACACCACAG GCTTCCATTTGCAGGAGACAGGGGGCGAGGCGACACCACAG Direct Loss 0.95637059037415 0 0.9373691 0 prediction 0.912741180748301 Functional Loss - LINC02078 ENSG00000214105 ncRNA_exonic Human other chr17:77685585 chr17:77685585 . . 0 21 hm5C_associated_SNPs_48916 0 0 0 0 0 unknown 0.500231623295176 0 0.8747382 0.000463246590352462 hm5C_site_4236 DeepMRMD:0.8747382;iRNA_m5C:0.000463246590352462 4237 chr7 50468294 50468294 1 + C T UCEC 50468294 + 50468274 50468314 41 CGAGTTCTCGTCGCACATAACGCGAGGGGAGCACCGCTTCC CGAGTTCTCGTCGCACATAATGCGAGGGGAGCACCGCTTCC Direct Loss 0.956363388436483 0 0.6655287 0 prediction 0.912726776872966 Functional Loss - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50468294 chr7:50468294 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_48917 0 0 0 0 0 Cytosol 0.500231643921092 0 0.3310574 0.000463287842184856 hm5C_site_4237 DeepMRMD:0.3310574;iRNA_m5C:0.000463287842184856 4238 chr8 38110280 38110280 1 + C T LIHC 38110280 + 38110260 38110300 41 GATTGAACCAATGGTGGTCCCAGGAGTGGAATTTGAGCCAA GATTGAACCAATGGTGGTCCTAGGAGTGGAATTTGAGCCAA Direct Loss 0.95634218816937 0 0.89144003 0 prediction 0.91268437633874 Functional Loss - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38110280 chr8:38110280 nonsynonymous SNV 0.936 3 21 hm5C_associated_SNPs_48918 0 0 1 0 2 chromatin 0.500231643665773 0 0.78288006 0.000463287331546658 hm5C_site_4238 DeepMRMD:0.78288006;iRNA_m5C:0.000463287331546658 4239 chr13 50571301 50571301 1 + C G rs28411370 50571301 + 50571281 50571321 41 ACCCGCCGCCCGGCTCCTCTCGGGAAAGCGGGGTGGTCCTC ACCCGCCGCCCGGCTCCTCTGGGGAAAGCGGGGTGGTCCTC Direct Loss 0.956334076751363 0 0.94218785 0 prediction 0.912668153502725 Functional Loss - DLEU2 ENSG00000204977 UTR5 Human protein_coding chr13:50571301 chr13:50571301 . . 0 21 hm5C_associated_SNPs_48919 0 0 1 0 1 unknown 0.500231644032606 0 0.8843757 0.000463288065211565 hm5C_site_4239 DeepMRMD:0.8843757;iRNA_m5C:0.000463288065211565 4240 chr7 156433520 156433520 1 + C T rs549516244 156433520 + 156433500 156433540 41 GTCGAGGCACGGAGAGGCTTCGGGGGAGGGACGGAAAGAAG GTCGAGGCACGGAGAGGCTTTGGGGGAGGGACGGAAAGAAG Direct Loss 0.95631960056023 0 0.91621923 0 prediction 0.912639201120461 Functional Loss - RNF32 ENSG00000105982 UTR5 Human protein_coding chr7:156433520 chr7:156433520 . . 0 21 hm5C_associated_SNPs_48920 0 0 0 0 0 Cytosol 0.500231643950629 0 0.83243846 0.000463287901257159 hm5C_site_4240 DeepMRMD:0.83243846;iRNA_m5C:0.000463287901257159 4241 chr6 147830172 147830172 1 + C A rs373282999 147830172 + 147830152 147830192 41 CTGGAGGTGTGCAAGCAGATCGGGGACCCGGACCTGGATGC CTGGAGGTGTGCAAGCAGATAGGGGACCCGGACCTGGATGC Direct Loss 0.956312618265035 0 0.92151445 0 prediction 0.91262523653007 Functional Loss - SAMD5 ENSG00000203727 CDS Human protein_coding chr6:147830172 chr6:147830172 synonymous SNV . 0 21 hm5C_associated_SNPs_48921 0 0 0 0 0 Ribosome 0.500231643921107 0 0.8430289 0.000463287842213944 hm5C_site_4241 DeepMRMD:0.8430289;iRNA_m5C:0.000463287842213944 4242 chr22 37333860 37333860 1 + C T COAD 37333860 + 37333840 37333880 41 GGGAGTCCCTCCCTGGAGTCCGGGGGAGGCCCTGCCCCTCC GGGAGTCCCTCCCTGGAGTCTGGGGGAGGCCCTGCCCCTCC Direct Loss 0.956307730408518 0 0.94505197 0 prediction 0.912615460817036 Functional Loss - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37333860 chr22:37333860 synonymous SNV . 0 21 hm5C_associated_SNPs_48922 0 0 0 0 0 Endoplasmic reticulum 0.500231643917246 0 0.89010394 0.000463287834492343 hm5C_site_4242 DeepMRMD:0.89010394;iRNA_m5C:0.000463287834492343 4243 chrX 48336460 48336460 1 + C T GBM 48336460 + 48336440 48336480 41 GACGGACGTCAAAGGACAAGCGGGATGTCTACTACCGCCTG GACGGACGTCAAAGGACAAGTGGGATGTCTACTACCGCCTG Direct Loss 0.95630702948708 0 0.90979826 0 prediction 0.91261405897416 Functional Loss - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48336460 chrX:48336460 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_48923 0 0 1 0 1 Ribosome 0.50023164392112 0 0.81959652 0.000463287842239701 hm5C_site_4243 DeepMRMD:0.81959652;iRNA_m5C:0.000463287842239701 4244 chr17 78395694 78395694 1 + C A rs35171431 78395694 + 78395674 78395714 41 TGTCGGGCTTCCTGGCCTTCCGAGAGGTGCCCTTCTTGCTG TGTCGGGCTTCCTGGCCTTCAGAGAGGTGCCCTTCTTGCTG Direct Loss 0.956305310018367 0 0.91320443 0 prediction 0.912610620036733 Functional Loss - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78395694 chr17:78395694 synonymous SNV . 0 21 hm5C_associated_SNPs_48924 0 0 0 0 1 Ribosome 0.500231643921129 0 0.82640886 0.000463287842257465 hm5C_site_4244 DeepMRMD:0.82640886;iRNA_m5C:0.000463287842257465 4245 chr5 115177767 115177767 1 + C T LGG 115177767 + 115177747 115177787 41 ATCCTAATCTTCAACAACCACGGGAAGCCGCGGCTCTCCAA ATCCTAATCTTCAACAACCATGGGAAGCCGCGGCTCTCCAA Direct Loss 0.956295989576071 0 0.8335494 0 prediction 0.912591979152142 Functional Loss - AP3S1 ENSG00000177879 CDS Human protein_coding chr5:115177767 chr5:115177767 synonymous SNV . 0 21 hm5C_associated_SNPs_48925 0 0 1 0 1 Ribosome 0.500231643921092 0 0.6670988 0.000463287842184856 hm5C_site_4245 DeepMRMD:0.6670988;iRNA_m5C:0.000463287842184856 Hypertension 4246 chr11 73103295 73103295 1 + C T UCEC 73103295 + 73103275 73103315 41 ACGTGGCGTGGAGGTGGCAGCAGGGGCCAGCAGCGGTGGTG ACGTGGCGTGGAGGTGGCAGTAGGGGCCAGCAGCGGTGGTG Direct Loss 0.956269923274073 0 0.9018526 0 prediction 0.912539846548147 Functional Loss - RELT ENSG00000054967 CDS Human protein_coding chr11:73103295 chr11:73103295 nonsynonymous SNV 0.870 0 21 hm5C_associated_SNPs_48926 0 0 1 0 0 chromatin 0.500231895544592 0 0.8037052 0.000463791089184928 hm5C_site_4246 DeepMRMD:0.8037052;iRNA_m5C:0.000463791089184928 4247 chrX 591771 591771 1 + C A THCA 591771 + 591751 591791 41 AGAGCGGACTGGCGCGCTCCCGGGAGCTGGGGACGTCGGAT AGAGCGGACTGGCGCGCTCCAGGGAGCTGGGGACGTCGGAT Direct Loss 0.956269689469258 0 0.9349221 0 prediction 0.912539378938516 Functional Loss - SHOX ENSG00000185960 CDS Human protein_coding chrX:591771 chrX:591771 synonymous SNV . 0 21 hm5C_associated_SNPs_48927 0 0 0 0 0 Nucleus 0.500231645186759 0 0.8698442 0.000463290373518666 hm5C_site_4247 DeepMRMD:0.8698442;iRNA_m5C:0.000463290373518666 4248 chr17 80320300 80320300 1 + C T UCEC 80320300 + 80320280 80320320 41 AGAGCCCAGGACAGCCTGTGCAGGGGGGCTCTGAGGCATGG AGAGCCCAGGACAGCCTGTGTAGGGGGGCTCTGAGGCATGG Direct Loss 0.956249055947415 0 0.84953994 0 prediction 0.91249811189483 Functional Loss - TEX19 ENSG00000182459 CDS Human protein_coding chr17:80320300 chr17:80320300 stopgain 0.002 0 21 hm5C_associated_SNPs_48928 0 0 0 0 0 exosome 0.500231643921092 0 0.69907988 0.000463287842184856 hm5C_site_4248 DeepMRMD:0.69907988;iRNA_m5C:0.000463287842184856 4249 chr20 4667168 4667168 1 + C A rs559032383 4667168 + 4667148 4667188 41 GACCGAGGCAGGTAAACGCCCGGGGTGGGAGGAACGCGGGC GACCGAGGCAGGTAAACGCCAGGGGTGGGAGGAACGCGGGC Direct Loss 0.956242094885591 0 0.90674376 0 prediction 0.912484189771182 Functional Loss - PRNP ENSG00000171867 intronic Human protein_coding chr20:4667168 chr20:4667168 . . 0 21 hm5C_associated_SNPs_48929 0 0 1 0 0 Ribosome 0.500231643921092 0 0.81348752 0.000463287842184856 hm5C_site_4249 DeepMRMD:0.81348752;iRNA_m5C:0.000463287842184856 4250 chr11 7111189 7111189 1 + C T UCEC 7111189 + 7111169 7111209 41 ATCTGAGCAGAGGCTCCCATCGAGAGCCCTTTGAGAGCTAC ATCTGAGCAGAGGCTCCCATTGAGAGCCCTTTGAGAGCTAC Direct Loss 0.95623772376679 0 0.8820575 0 prediction 0.91247544753358 Functional Loss - RBMXL2 ENSG00000170748 CDS Human protein_coding chr11:7111189 chr11:7111189 stopgain 0.844 0 21 hm5C_associated_SNPs_48930 0 0 0 0 0 exosome 0.500231643432355 0 0.764115 0.000463286864709422 hm5C_site_4250 DeepMRMD:0.764115;iRNA_m5C:0.000463286864709422 4251 chr7 102574474 102574474 1 + C T STAD 102574474 + 102574454 102574494 41 CATGGCCGGGCGGGTGGAGGCCGGAGAGGCTCCAACCCGGT CATGGCCGGGCGGGTGGAGGTCGGAGAGGCTCCAACCCGGT Direct Loss 0.956228249629231 0 0.9089161 0 prediction 0.912456499258462 Functional Loss - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102574474 chr7:102574474 synonymous SNV . 0 21 hm5C_associated_SNPs_48931 0 0 0 0 0 Cytosol 0.500231642662268 0 0.8178322 0.000463285324536766 hm5C_site_4251 DeepMRMD:0.8178322;iRNA_m5C:0.000463285324536766 4252 chr19 17898527 17898527 1 + C T LIHC 17898527 + 17898507 17898547 41 TGCCAGCTGGGAGCCGCTCTCAGGGCCCAGCACACCCAGCC TGCCAGCTGGGAGCCGCTCTTAGGGCCCAGCACACCCAGCC Direct Loss 0.956227499996172 0 0.96257704 0 prediction 0.912454999992343 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17898527 chr19:17898527 nonsynonymous SNV 0.010 1 21 hm5C_associated_SNPs_48932 0 0 0 0 1 Cytosol 0.500231643914373 0 0.92515408 0.000463287828746495 hm5C_site_4252 DeepMRMD:0.92515408;iRNA_m5C:0.000463287828746495 4253 chr20 4680058 4680058 1 + C G LUAD 4680058 + 4680038 4680078 41 GGGCAGCCTCATGGTGGTGGCTGGGGGCAGCCTCATGGTGG GGGCAGCCTCATGGTGGTGGGTGGGGGCAGCCTCATGGTGG Direct Loss 0.95622453281474 0 0.8786253 0 prediction 0.91244906562948 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680058 chr20:4680058 synonymous SNV . 0 21 hm5C_associated_SNPs_48933 0 0 1 0 1 Ribosome 0.500231643921094 0 0.7572506 0.000463287842188187 hm5C_site_4253 DeepMRMD:0.7572506;iRNA_m5C:0.000463287842188187 4254 chrX 150869254 150869254 1 + C T STAD 150869254 + 150869234 150869274 41 AAGGGGAGCCTTCTGGGCACCGAGAGGCAGCGAACAGCCCC AAGGGGAGCCTTCTGGGCACTGAGAGGCAGCGAACAGCCCC Direct Loss 0.956219077128556 0 0.66703594 0 prediction 0.912438154257113 Functional Loss - PRRG3 ENSG00000130032 CDS Human protein_coding chrX:150869254 chrX:150869254 stopgain 0.991 0 21 hm5C_associated_SNPs_48934 0 0 0 0 0 exosome 0.500231643921092 0 0.33407188 0.000463287842184856 hm5C_site_4254 DeepMRMD:0.33407188;iRNA_m5C:0.000463287842184856 4255 chr8 22864481 22864481 1 + G A STAD 22864481 - 22864461 22864501 41 GGGTCGGGCACCACGATGATCGGGGGCGGTGGCTTGGGGGG GGGTCGGGCACCACGATGATTGGGGGCGGTGGCTTGGGGGG Direct Loss 0.956206178950409 0 0.94349825 0 prediction 0.912412357900817 Functional Loss - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22864481 chr8:22864481 synonymous SNV . 0 21 hm5C_associated_SNPs_48935 0 0 0 0 0 cytosol 0.500231643921405 0 0.8869965 0.000463287842810356 hm5C_site_4255 DeepMRMD:0.8869965;iRNA_m5C:0.000463287842810356 4256 chr17 1944907 1944907 1 + C A LUSC 1944907 + 1944887 1944927 41 ACGCCCCGGGCCGGCCCGCGCGGGGGAAGGTAGGCGGGGGC ACGCCCCGGGCCGGCCCGCGAGGGGGAAGGTAGGCGGGGGC Direct Loss 0.956191444549748 0 0.9377328 0 prediction 0.912382889099496 Functional Loss - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1944907 chr17:1944907 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_48936 0 0 1 0 1 Endoplasmic reticulum 0.500231598761512 0 0.8754656 0.000463197523024261 hm5C_site_4256 DeepMRMD:0.8754656;iRNA_m5C:0.000463197523024261 4257 chr1 55075352 55075352 1 + G A rs138880093 55075352 - 55075332 55075372 41 GTTGGGGCCAAAATCTCCCACGGGAGTTTTTCGGTCCCCGG GTTGGGGCCAAAATCTCCCATGGGAGTTTTTCGGTCCCCGG Direct Loss 0.956189886044376 0 0.9015924 0 prediction 0.912379772088751 Functional Loss - FAM151A ENSG00000162391 CDS Human protein_coding chr1:55075352 chr1:55075352 synonymous SNV . 0 21 hm5C_associated_SNPs_48937 0 0 0 0 0 exosome 0.500231643921093 0 0.8031848 0.000463287842186189 hm5C_site_4257 DeepMRMD:0.8031848;iRNA_m5C:0.000463287842186189 4258 chr12 50480064 50480064 1 + C A SARC 50480064 + 50480044 50480084 41 AGTCAGGGATGGATCAGTCCCGCAAGAGACCTGCCCCTCAG AGTCAGGGATGGATCAGTCCAGCAAGAGACCTGCCCCTCAG Direct Loss 0.956189168212024 0 0.4241529 0 prediction 0.912378336424048 Functional Loss - SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50480064 chr12:50480064 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_48938 0 0 1 0 1 Cytosol 0.500231644299418 0 0 0.000463288598836042 hm5C_site_4258 DeepMRMD:0;iRNA_m5C:0.000463288598836042 4259 chr5 179126070 179126070 1 + C T rs185536392 179126070 + 179126050 179126090 41 GGTGTGCGGGCGGGAAGGGGCACGGGCACCCCCGCGGTCCC GGTGTGCGGGCGGGAAGGGGTACGGGCACCCCCGCGGTCCC Direct Loss 0.956184552934784 0 0.88651615 0 prediction 0.912369105869568 Functional Loss - CANX ENSG00000127022 CDS Human protein_coding chr5:179126070 chr5:179126070 unknown . 0 21 hm5C_associated_SNPs_48939 0 0 1 0 1 Nucleus 0.500231643919381 0 0.7730323 0.000463287838761373 hm5C_site_4259 DeepMRMD:0.7730323;iRNA_m5C:0.000463287838761373 4260 chr22 37273767 37273767 1 + C T UCEC 37273767 + 37273747 37273787 41 AGGACGTAGCGCTCATGGTGCGGCAGGCTCGTGGCCTCCCC AGGACGTAGCGCTCATGGTGTGGCAGGCTCGTGGCCTCCCC Direct Loss 0.95618416292269 0 0.82225573 0 prediction 0.912368325845381 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37273767 chr22:37273767 nonsynonymous SNV 0.063 2 21 hm5C_associated_SNPs_48940 0 0 0 0 1 exosome 0.500231643566194 0 0.64451146 0.00046328713238708 hm5C_site_4260 DeepMRMD:0.64451146;iRNA_m5C:0.00046328713238708 4261 chr11 1995122 1995122 1 + C T rs528227411 1995122 + 1995102 1995142 41 CAGGGTGGTGGGGGGCAGCCCGGGGGGGCTCCTGAGGATGC CAGGGTGGTGGGGGGCAGCCTGGGGGGGCTCCTGAGGATGC Direct Loss 0.956174561839705 0 0.9285318 0 prediction 0.91234912367941 Functional Loss - MRPL23;MRPL23-AS1 ENSG00000214026 intronic Human protein_coding chr11:1995122 chr11:1995122 . . 0 21 hm5C_associated_SNPs_48941 0 0 0 0 0 unknown 0.500231643921092 0 0.8570636 0.00046328784218419 hm5C_site_4261 DeepMRMD:0.8570636;iRNA_m5C:0.00046328784218419 4262 chrX 118708894 118708894 1 + C T UCEC 118708894 + 118708874 118708914 41 GATCCTCCAGCCGGAGTCAGCGGGGCTCCGTCCGAGAACAA GATCCTCCAGCCGGAGTCAGTGGGGCTCCGTCCGAGAACAA Direct Loss 0.956173214688604 0 0.92455745 0 prediction 0.912346429377209 Functional Loss - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118708894 chrX:118708894 synonymous SNV . 0 21 hm5C_associated_SNPs_48942 0 0 1 0 2 Ribosome 0.500231643921092 0 0.8491149 0.000463287842184856 hm5C_site_4262 DeepMRMD:0.8491149;iRNA_m5C:0.000463287842184856 4263 chr2 113482994 113482994 1 + C T UCEC 113482994 + 113482974 113483014 41 TGTGCGAGCTGCTTGGGGTTCGGGGGATGGACATCCTGTAC TGTGCGAGCTGCTTGGGGTTTGGGGGATGGACATCCTGTAC Direct Loss 0.956170205838784 0 0.9336442 0 prediction 0.912340411677568 Functional Loss - NT5DC4 ENSG00000144130 CDS Human protein_coding chr2:113482994 chr2:113482994 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_48943 0 0 0 0 1 chromatin 0.500231643921091 0 0.8672884 0.000463287842182636 hm5C_site_4263 DeepMRMD:0.8672884;iRNA_m5C:0.000463287842182636 4264 chr17 47287932 47287932 1 + G A rs73338394 47287932 - 47287912 47287952 41 AAGGGCAGGCATGCTCATTCCGGGACAAGAGGAAGTCAGTC AAGGGCAGGCATGCTCATTCTGGGACAAGAGGAAGTCAGTC Direct Loss 0.9561689096319 0 0.88966376 0 prediction 0.912337819263801 Functional Loss - ABI3;GNGT2 ENSG00000108798;ENSG00000167083 UTR5 Human other chr17:47287932 chr17:47287932 . . 0 21 hm5C_associated_SNPs_48944 0 0 0 0 0 unknown 0.500231644112314 0 0.77932752 0.0004632882246276 hm5C_site_4264 DeepMRMD:0.77932752;iRNA_m5C:0.0004632882246276 4265 chr5 176306351 176306351 1 + C T rs79316355 176306351 + 176306331 176306371 41 GCTGGCTCTGGAGAGTGAAGCGGGGGTCCCAGCCCTGGTGG GCTGGCTCTGGAGAGTGAAGTGGGGGTCCCAGCCCTGGTGG Direct Loss 0.956164602347801 0 0.9682635 0 prediction 0.912329204695602 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176306351 chr5:176306351 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_48945 0 0 0 0 1 exosome 0.500234361167671 0 0.936527 0.000468722335341676 hm5C_site_4265 DeepMRMD:0.936527;iRNA_m5C:0.000468722335341676 4266 chr7 143771460 143771460 1 + C A LUAD 143771460 + 143771440 143771480 41 CAATCCTGGGGCTCATCTCACTGGACTCCAGACTCCACACC CAATCCTGGGGCTCATCTCAATGGACTCCAGACTCCACACC Direct Loss 0.956153720235617 0 0.13377914 0 prediction 0.912307440471233 Functional Loss - OR2A25 ENSG00000221933 CDS Human protein_coding chr7:143771460 chr7:143771460 nonsynonymous SNV 0.298 2 21 hm5C_associated_SNPs_48946 0 0 0 0 0 unknown 0.50023164262525 0 0 0.000463285250500656 hm5C_site_4266 DeepMRMD:0;iRNA_m5C:0.000463285250500656 4267 chr11 2424652 2424652 1 + C T SKCM 2424652 + 2424632 2424672 41 CTGGCCCATCTGGCCGGGCCCGGGAGCCCAGAGGCTGAGGA CTGGCCCATCTGGCCGGGCCTGGGAGCCCAGAGGCTGAGGA Direct Loss 0.956145377239422 0 0.88565075 0 prediction 0.912290754478844 Functional Loss - TSSC4 ENSG00000184281 CDS Human protein_coding chr11:2424652 chr11:2424652 synonymous SNV . 0 21 hm5C_associated_SNPs_48947 0 0 0 0 0 Ribosome 0.50023164392107 0 0.7713015 0.000463287842140891 hm5C_site_4267 DeepMRMD:0.7713015;iRNA_m5C:0.000463287842140891 4268 chr20 43243338 43243338 1 + C T STAD 43243338 + 43243318 43243358 41 GACATGGGCGAGCTGGCACTCGAGGGGGCAGGTTAGAGCCA GACATGGGCGAGCTGGCACTTGAGGGGGCAGGTTAGAGCCA Direct Loss 0.956144751862484 0 0.9333665 0 prediction 0.912289503724969 Functional Loss - PKIG ENSG00000168734 CDS Human protein_coding chr20:43243338 chr20:43243338 synonymous SNV . 0 21 hm5C_associated_SNPs_48948 0 0 1 0 1 Ribosome 0.500231643921088 0 0.866733 0.000463287842176863 hm5C_site_4268 DeepMRMD:0.866733;iRNA_m5C:0.000463287842176863 4269 chr13 31891810 31891810 1 + C T DLBC 31891810 + 31891790 31891830 41 TGGTGGCTACAGCTACATCACGGGAGGAGGAGGGTAACTAT TGGTGGCTACAGCTACATCATGGGAGGAGGAGGGTAACTAT Direct Loss 0.956127688831845 0 0.90674365 0 prediction 0.912255377663691 Functional Loss - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31891810 chr13:31891810 nonsynonymous SNV 0.587 4 21 hm5C_associated_SNPs_48949 0 0 0 0 0 Ribosome 0.50023164400216 0 0.8134873 0.000463288004320495 hm5C_site_4269 DeepMRMD:0.8134873;iRNA_m5C:0.000463288004320495 4270 chr5 132149705 132149705 1 + C T rs186130812 132149705 + 132149685 132149725 41 GGTGCCGCGGCCAGTGGAGCCGCCAGGGGACCTGGGTCTGC GGTGCCGCGGCCAGTGGAGCTGCCAGGGGACCTGGGTCTGC Direct Loss 0.956120410436977 0 0.912271 0 prediction 0.912240820873955 Functional Loss - SOWAHA ENSG00000198944 CDS Human protein_coding chr5:132149705 chr5:132149705 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_48950 0 0 0 0 0 exosome 0.500231643921092 0 0.824542 0.000463287842184856 hm5C_site_4270 DeepMRMD:0.824542;iRNA_m5C:0.000463287842184856 4271 chr17 18638554 18638554 1 + C G CESC 18638554 + 18638534 18638574 41 CCACTCAAAGCTGGCCCTTTCTGGAGGCTCGGGGTCTATAT CCACTCAAAGCTGGCCCTTTGTGGAGGCTCGGGGTCTATAT Direct Loss 0.956092760278707 0 0.9271232 0 prediction 0.912185520557415 Functional Loss - TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18638554 chr17:18638554 nonsynonymous SNV 0.436 0 21 hm5C_associated_SNPs_48951 0 0 1 1 0 Nucleus 0.500231643921092 0 0.8542464 0.000463287842184856 hm5C_site_4271 DeepMRMD:0.8542464;iRNA_m5C:0.000463287842184856 4272 chr19 41626322 41626322 1 + C T BLCA 41626322 + 41626302 41626342 41 ATCCAGATTCTACGGAATTTCGGGATGGGGAAGAGAAGCAT ATCCAGATTCTACGGAATTTTGGGATGGGGAAGAGAAGCAT Direct Loss 0.956087982994345 0 0.91383183 0 prediction 0.91217596598869 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41626322 chr19:41626322 synonymous SNV . 0 21 hm5C_associated_SNPs_48952 0 0 0 0 2 exosome 0.500231641936484 0 0.82766366 0.000463283872968123 hm5C_site_4272 DeepMRMD:0.82766366;iRNA_m5C:0.000463283872968123 4273 chr19 12800885 12800885 1 + C A UCEC 12800885 + 12800865 12800905 41 CCAGCAGGGTCAGCACGGGTCTGGAGTGTAGTTGCTGGTGC CCAGCAGGGTCAGCACGGGTATGGAGTGTAGTTGCTGGTGC Direct Loss 0.95607284766647 0 0.42254725 0 prediction 0.912145695332941 Functional Loss - FBXW9 ENSG00000132004 CDS Human protein_coding chr19:12800885 chr19:12800885 nonsynonymous SNV 0.093 2 21 hm5C_associated_SNPs_48953 0 0 0 0 0 Cytosol 0.500232124327557 0 0 0.000464248655114741 hm5C_site_4273 DeepMRMD:0;iRNA_m5C:0.000464248655114741 4274 chr19 53989969 53989969 1 + C T UCEC 53989969 + 53989949 53989989 41 CCTGCTCAGAGGACTCTATACAGGGACGTGATGCTGGAGAA CCTGCTCAGAGGACTCTATATAGGGACGTGATGCTGGAGAA Direct Loss 0.956071104773278 0 0.93609375 0 prediction 0.912142209546555 Functional Loss - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53989969 chr19:53989969 synonymous SNV . 0 21 hm5C_associated_SNPs_48954 0 0 0 1 1 nucleolus 0.500231643921092 0 0.8721875 0.000463287842184856 hm5C_site_4274 DeepMRMD:0.8721875;iRNA_m5C:0.000463287842184856 4275 chr4 134072763 134072763 1 + C A STAD 134072763 + 134072743 134072783 41 ACGCGGTGAGCGCCACCGACCGGGATGAGGGCGCCAACGCC ACGCGGTGAGCGCCACCGACAGGGATGAGGGCGCCAACGCC Direct Loss 0.956055333039771 0 0.94618165 0 prediction 0.912110666079541 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134072763 chr4:134072763 synonymous SNV . 0 21 hm5C_associated_SNPs_48955 0 0 0 0 0 cytosol 0.500231643921093 0 0.8923633 0.000463287842185967 hm5C_site_4275 DeepMRMD:0.8923633;iRNA_m5C:0.000463287842185967 4276 chr15 74180059 74180059 1 + C T UCEC 74180059 + 74180039 74180079 41 GTGCTGCAGGAAAGCATGGGCGGGGATGACATCCTCCTGGT GTGCTGCAGGAAAGCATGGGTGGGGATGACATCCTCCTGGT Direct Loss 0.956049859817854 0 0.9201305 0 prediction 0.912099719635708 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74180059 chr15:74180059 synonymous SNV . 0 21 hm5C_associated_SNPs_48956 0 0 0 0 2 exosome 0.500231619939469 0 0.840261 0.000463239878937483 hm5C_site_4276 DeepMRMD:0.840261;iRNA_m5C:0.000463239878937483 4277 chr19 34262922 34262922 1 + C A rs149660944 34262922 + 34262902 34262942 41 AACCCACAGAGAGGGTCACTCGGGACTTATCCAGTGGGGCC AACCCACAGAGAGGGTCACTAGGGACTTATCCAGTGGGGCC Direct Loss 0.956048014375203 0 0.9432882 0 prediction 0.912096028750407 Functional Loss - CHST8 ENSG00000124302 CDS Human protein_coding chr19:34262922 chr19:34262922 synonymous SNV . 0 21 hm5C_associated_SNPs_48957 0 0 1 0 1 exosome 0.50023161012707 0 0.8865764 0.000463220254139474 hm5C_site_4277 DeepMRMD:0.8865764;iRNA_m5C:0.000463220254139474 4278 chr3 8787358 8787358 1 + C A UCEC 8787358 + 8787338 8787378 41 GGCGTCCCACTGGCCCTGCTCTGGGGCTTCCTGTTCGCCTG GGCGTCCCACTGGCCCTGCTATGGGGCTTCCTGTTCGCCTG Direct Loss 0.9560421729447 0 0.8628937 0 prediction 0.912084345889399 Functional Loss - CAV3 ENSG00000182533 CDS Human protein_coding chr3:8787358 chr3:8787358 synonymous SNV . 0 21 hm5C_associated_SNPs_48958 0 0 0 0 0 exosome 0.500231633387722 0 0.7257874 0.00046326677544406 hm5C_site_4278 DeepMRMD:0.7257874;iRNA_m5C:0.00046326677544406 4279 chr5 3596419 3596419 1 + C T BLCA 3596419 + 3596399 3596439 41 GCTGGGCATGTACGCGGCGGCGGGGCCGTACGCGGGCGCGC GCTGGGCATGTACGCGGCGGTGGGGCCGTACGCGGGCGCGC Direct Loss 0.956033182417577 0 0.90036553 0 prediction 0.912066364835154 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3596419 chr5:3596419 nonsynonymous SNV 0.988 1 21 hm5C_associated_SNPs_48959 0 0 0 0 1 exosome 0.500231643123396 0 0.80073106 0.000463286246791927 hm5C_site_4279 DeepMRMD:0.80073106;iRNA_m5C:0.000463286246791927 4280 chr22 50615944 50615944 1 + C T UCEC 50615944 + 50615924 50615964 41 GGGCGCGTCCCCGGACGGGGCGGCAGGTGCGGGGCCCGCGG GGGCGCGTCCCCGGACGGGGTGGCAGGTGCGGGGCCCGCGG Direct Loss 0.956032107723373 0 0.91133624 0 prediction 0.912064215446746 Functional Loss - PANX2 ENSG00000073150 CDS Human protein_coding chr22:50615944 chr22:50615944 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_48960 0 0 1 0 0 Endoplasmic reticulum 0.500229387955865 0 0.82267248 0.000458775911729381 hm5C_site_4280 DeepMRMD:0.82267248;iRNA_m5C:0.000458775911729381 4281 chr11 67352180 67352180 1 + C T STAD 67352180 + 67352160 67352200 41 ACGGGCAGCTCCCCAAGTTCCAGGACGGAGACCTCACCCTG ACGGGCAGCTCCCCAAGTTCTAGGACGGAGACCTCACCCTG Direct Loss 0.956027453058788 0 0.7689973 0 prediction 0.912054906117575 Functional Loss - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67352180 chr11:67352180 stopgain 0.997 0 21 hm5C_associated_SNPs_48961 0 0 1 0 2 Cytosol 0.500231391671391 0 0.5379946 0.000462783342781936 hm5C_site_4281 DeepMRMD:0.5379946;iRNA_m5C:0.000462783342781936 4282 chr12 52306960 52306960 1 + C T COAD 52306960 + 52306940 52306980 41 ATTGCAAGGGGCCTACCTGCCGGGGGGCCTGGTGCACAGTA ATTGCAAGGGGCCTACCTGCTGGGGGGCCTGGTGCACAGTA Direct Loss 0.956020188537178 0 0.93224514 0 prediction 0.912040377074355 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52306960 chr12:52306960 nonsynonymous SNV 0.580 1 21 hm5C_associated_SNPs_48962 0 0 0 0 1 Endoplasmic reticulum 0.500231643921595 0 0.86449028 0.000463287843190496 hm5C_site_4282 DeepMRMD:0.86449028;iRNA_m5C:0.000463287843190496 4283 chr18 641413 641413 1 + C A UCEC 641413 + 641393 641433 41 ATCAGCAGTATGGCCAGATTCTCCAGATGACCCGGAAGCAC ATCAGCAGTATGGCCAGATTATCCAGATGACCCGGAAGCAC Direct Loss 0.956005701747106 0 0.9378384 0 prediction 0.912011403494213 Functional Loss - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641413 chr18:641413 nonsynonymous SNV 0.574 1 21 hm5C_associated_SNPs_48963 0 0 0 0 1 cytosol 0.500231511400324 0 0.8756768 0.000463022800648805 hm5C_site_4283 DeepMRMD:0.8756768;iRNA_m5C:0.000463022800648805 4284 chr14 88480354 88480354 1 + C G rs5014612 88480354 + 88480334 88480374 41 TCCAGAAGAGCGGAGGAACCCAGGATAATATTTTGTCAACC TCCAGAAGAGCGGAGGAACCGAGGATAATATTTTGTCAACC Direct Loss 0.956005042707321 0 0.87748116 0 prediction 0.912010085414642 Functional Loss - GPR65 ENSG00000258407 ncRNA_intronic Human antisense chr14:88480354 chr14:88480354 . . 0 21 hm5C_associated_SNPs_48964 0 0 0 0 0 exosome 0.500231643841295 0 0.75496232 0.000463287682590519 hm5C_site_4284 DeepMRMD:0.75496232;iRNA_m5C:0.000463287682590519 4285 chr5 3596411 3596411 1 + C T STAD 3596411 + 3596391 3596431 41 ACCTCGGTGCTGGGCATGTACGCGGCGGCGGGGCCGTACGC ACCTCGGTGCTGGGCATGTATGCGGCGGCGGGGCCGTACGC Direct Loss 0.956003330888295 0 0.91297054 0 prediction 0.91200666177659 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3596411 chr5:3596411 synonymous SNV . 0 21 hm5C_associated_SNPs_48965 0 0 0 0 1 exosome 0.500231643934043 0 0.82594108 0.000463287868086359 hm5C_site_4285 DeepMRMD:0.82594108;iRNA_m5C:0.000463287868086359 4286 chr1 3397035 3397035 1 + C T SKCM 3397035 + 3397015 3397055 41 GGCTCTATGGCGAGAGGCTCCGGGACGGAGAGACGGGATGG GGCTCTATGGCGAGAGGCTCTGGGACGGAGAGACGGGATGG Direct Loss 0.956000315097122 0 0.95153993 0 prediction 0.912000630194244 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3397035 chr1:3397035 nonsynonymous SNV 0.222 4 21 hm5C_associated_SNPs_48966 0 0 1 0 0 Ribosome 0.500231644325163 0 0.90307986 0.000463288650326632 hm5C_site_4286 DeepMRMD:0.90307986;iRNA_m5C:0.000463288650326632 Multiple complex diseases 4287 chr6 43267740 43267740 1 + C T STAD 43267740 + 43267720 43267760 41 CACTGGTTGGGTACCTGATACGGGACTGGCGATGGCTTCTG CACTGGTTGGGTACCTGATATGGGACTGGCGATGGCTTCTG Direct Loss 0.955991233358183 0 0.8766626 0 prediction 0.911982466716365 Functional Loss - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43267740 chr6:43267740 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_48967 0 0 0 0 1 cytosol 0.500231643921092 0 0.7533252 0.000463287842184856 hm5C_site_4287 DeepMRMD:0.7533252;iRNA_m5C:0.000463287842184856 4288 chr5 177548655 177548655 1 + C A LUAD 177548655 + 177548635 177548675 41 GCGAGGCTGTGCGCAGCCTGCAGGAGCAGGCCCCTCGGGAG GCGAGGCTGTGCGCAGCCTGAAGGAGCAGGCCCCTCGGGAG Direct Loss 0.955990930457305 0 0.9044008 0 prediction 0.911981860914611 Functional Loss - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177548655 chr5:177548655 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_48968 0 0 0 0 0 chromatin 0.500231643921092 0 0.8088016 0.000463287842184856 hm5C_site_4288 DeepMRMD:0.8088016;iRNA_m5C:0.000463287842184856 4289 chr15 93426649 93426649 1 + C A rs2304654 93426649 + 93426629 93426669 41 CGGGGCCCCGCTGCAGAGCCCGCGGGCGGCAGGTGGGCGGG CGGGGCCCCGCTGCAGAGCCAGCGGGCGGCAGGTGGGCGGG Direct Loss 0.955982362100709 0 0.8950418 0 prediction 0.911964724201418 Functional Loss - LINC01578 ENSG00000272888 ncRNA_intronic Human processed_transcript chr15:93426649 chr15:93426649 . . 0 21 hm5C_associated_SNPs_48969 0 0 1 0 0 unknown 0.500231643921092 0 0.7900836 0.000463287842184856 hm5C_site_4289 DeepMRMD:0.7900836;iRNA_m5C:0.000463287842184856 4290 chr19 5688095 5688095 1 + C A rs190801974 5688095 + 5688075 5688115 41 TCAAGACAGAAAAGCAAAACCGAGAAAAACGACGGGCACCT TCAAGACAGAAAAGCAAAACAGAGAAAAACGACGGGCACCT Direct Loss 0.955966694571334 0 0.8340359 0 prediction 0.911933389142669 Functional Loss - HSD11B1L ENSG00000167733 CDS Human protein_coding chr19:5688095 chr19:5688095 synonymous SNV . 0 21 hm5C_associated_SNPs_48970 0 0 0 0 0 exosome 0.500231643921092 0 0.6680718 0.000463287842184856 hm5C_site_4290 DeepMRMD:0.6680718;iRNA_m5C:0.000463287842184856 4291 chr16 1751935 1751935 1 + C T rs1136070 1751935 + 1751915 1751955 41 TGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGTGAGGCAGG TGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGTGAGGCAGG Direct Loss 0.9559629035834 0 0.92999077 0 prediction 0.911925807166799 Functional Loss - JPT2 ENSG00000206053 UTR3 Human protein_coding chr16:1751935 chr16:1751935 . . 0 21 hm5C_associated_SNPs_48971 0 0 1 0 0 unknown 0.500231643920887 0 0.85998154 0.00046328784177363 hm5C_site_4291 DeepMRMD:0.85998154;iRNA_m5C:0.00046328784177363 4292 chr7 89866428 89866428 1 + C T rs17866173 89866428 + 89866408 89866448 41 TGCTGGGATTGTGGATATAACAGGAGCCCTGGCAGCTGTCT TGCTGGGATTGTGGATATAATAGGAGCCCTGGCAGCTGTCT Direct Loss 0.955956134370255 0 0.45869863 0 prediction 0.91191226874051 Functional Loss - STEAP2 ENSG00000157214 UTR3 Human protein_coding chr7:89866428 chr7:89866428 . . 0 21 hm5C_associated_SNPs_48972 0 0 1 1 0 Nucleus 0.500231642836368 0 0 0.000463285672735569 hm5C_site_4292 DeepMRMD:0;iRNA_m5C:0.000463285672735569 4293 chr11 45949534 45949534 1 + C T rs939105 45949534 + 45949514 45949554 41 GCACTGGTGGTGCCGGCATTCGAGACCCTGCGCTACCGCTT GCACTGGTGGTGCCGGCATTTGAGACCCTGCGCTACCGCTT Direct Loss 0.955949897640125 0 0.91229033 0 prediction 0.911899795280249 Functional Loss - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949534 chr11:45949534 synonymous SNV . 0 21 hm5C_associated_SNPs_48973 0 1 0 0 2 chromatin 0.500231643926554 0 0.82458066 0.000463287853107452 hm5C_site_4293 DeepMRMD:0.82458066;iRNA_m5C:0.000463287853107452 4294 chr3 39433446 39433446 1 + C T COAD 39433446 + 39433426 39433466 41 GCCTGACAGCAACTCTCCTTCGAGATGCGCCCTTCTCAGGA GCCTGACAGCAACTCTCCTTTGAGATGCGCCCTTCTCAGGA Direct Loss 0.955940774331834 0 0.9440303 0 prediction 0.911881548663668 Functional Loss - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39433446 chr3:39433446 stopgain 0.985 1 21 hm5C_associated_SNPs_48974 0 0 1 0 1 Ribosome 0.500231643921092 0 0.8880606 0.000463287842184856 hm5C_site_4294 DeepMRMD:0.8880606;iRNA_m5C:0.000463287842184856 4295 chr19 39760411 39760411 1 + C T UCEC 39760411 + 39760391 39760431 41 CCACGGCAGGGCCCAGGACCCGGGGCCGCCTCCACCATTGG CCACGGCAGGGCCCAGGACCTGGGGCCGCCTCCACCATTGG Direct Loss 0.955940093965079 0 0.94134367 0 prediction 0.911880187930158 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760411 chr19:39760411 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_48975 0 0 0 0 2 exosome 0.500231643978139 0 0.88268734 0.000463287956278258 hm5C_site_4295 DeepMRMD:0.88268734;iRNA_m5C:0.000463287956278258 4296 chr1 29069012 29069012 1 + C T STAD 29069012 + 29068992 29069032 41 GGGTGAAGCTGCTTGGTCTACGGGGGGTGACACAGCCATGC GGGTGAAGCTGCTTGGTCTATGGGGGGTGACACAGCCATGC Direct Loss 0.955939816298306 0 0.94872105 0 prediction 0.911879632596613 Functional Loss - YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069012 chr1:29069012 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_48976 0 0 1 0 1 Cytosol 0.500231643921092 0 0.8974421 0.000463287842184856 hm5C_site_4296 DeepMRMD:0.8974421;iRNA_m5C:0.000463287842184856 4297 chr5 2755246 2755246 1 + C T HNSC 2755246 + 2755226 2755266 41 CGGCCCCGGAGGCTCGGGCTCGGGGTCTCCCCGGGGACGCG CGGCCCCGGAGGCTCGGGCTTGGGGTCTCCCCGGGGACGCG Direct Loss 0.955939543537558 0 0.9386004 0 prediction 0.911879087075117 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2755246 chr5:2755246 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48977 0 0 0 0 0 exosome 0.500231643921112 0 0.8772008 0.000463287842223936 hm5C_site_4297 DeepMRMD:0.8772008;iRNA_m5C:0.000463287842223936 4298 chr17 40091945 40091945 1 + C A BRCA 40091945 + 40091925 40091965 41 GCTACAAGCTGAGGCCTGATCGGGAATTCAGAGTTGGCATT GCTACAAGCTGAGGCCTGATAGGGAATTCAGAGTTGGCATT Direct Loss 0.955934980270539 0 0.92381746 0 prediction 0.911869960541078 Functional Loss - TTC25 ENSG00000204815 ncRNA_exonic Human protein_coding chr17:40091945 chr17:40091945 . . 0 21 hm5C_associated_SNPs_48978 0 0 0 0 2 nucleolus 0.500231643921092 0 0.84763492 0.000463287842184856 hm5C_site_4298 DeepMRMD:0.84763492;iRNA_m5C:0.000463287842184856 4299 chr14 52781855 52781855 1 + C T CESC 52781855 + 52781835 52781875 41 GGCACGGGCGGACCGCTTACCTGCAGCTGTACGCCACCCTG GGCACGGGCGGACCGCTTACTTGCAGCTGTACGCCACCCTG Direct Loss 0.95591365449853 0 0.44177154 0 prediction 0.91182730899706 Functional Loss - PTGER2 ENSG00000125384 CDS Human protein_coding chr14:52781855 chr14:52781855 synonymous SNV . 0 21 hm5C_associated_SNPs_48979 0 0 0 0 0 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4299 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4300 chr11 309045 309045 1 + C T LUAD 309045 + 309025 309065 41 AAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCCTC AAGATGGTTGGCGACGTGACTGGGGCCCAGGCCTATGCCTC Direct Loss 0.955912402941479 0 0.93784183 0 prediction 0.911824805882957 Functional Loss - IFITM2 ENSG00000185201 CDS Human protein_coding chr11:309045 chr11:309045 synonymous SNV . 0 21 hm5C_associated_SNPs_48980 0 0 0 0 1 Endoplasmic reticulum 0.500231643693048 0 0.87568366 0.000463287386095912 hm5C_site_4300 DeepMRMD:0.87568366;iRNA_m5C:0.000463287386095912 4301 chr16 31342551 31342551 1 + C T UCEC 31342551 + 31342531 31342571 41 CTCATCGTGGGCAGCTCTGTCGGGGGACTGCTGCTCCTGGC CTCATCGTGGGCAGCTCTGTTGGGGGACTGCTGCTCCTGGC Direct Loss 0.955909675117572 0 0.957783 0 prediction 0.911819350235144 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31342551 chr16:31342551 synonymous SNV . 0 21 hm5C_associated_SNPs_48981 0 0 0 0 2 Endoplasmic reticulum 0.500231643921093 0 0.915566 0.000463287842185967 hm5C_site_4301 DeepMRMD:0.915566;iRNA_m5C:0.000463287842185967 4302 chr3 14989286 14989286 1 + G A rs547567795 14989286 - 14989266 14989306 41 GATGGCGGGAGCCCGGGGGCCGCGGGCTCGCGGGGCAGCGG GATGGCGGGAGCCCGGGGGCTGCGGGCTCGCGGGGCAGCGG Direct Loss 0.955904987417867 0 0.93200505 0 prediction 0.911809974835733 Functional Loss - FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989286 chr3:14989286 . . 0 21 hm5C_associated_SNPs_48982 0 0 1 0 1 unknown 0.500231643921092 0 0.8640101 0.000463287842184856 hm5C_site_4302 DeepMRMD:0.8640101;iRNA_m5C:0.000463287842184856 4303 chr4 185940787 185940787 1 + C T HNSC 185940787 + 185940767 185940807 41 CCTGAGCGCAGGGCGAACCTCAGGAGGCTCTGGCGCAGATC CCTGAGCGCAGGGCGAACCTTAGGAGGCTCTGGCGCAGATC Direct Loss 0.955901388404345 0 0.90964913 0 prediction 0.91180277680869 Functional Loss - HELT ENSG00000187821 CDS Human protein_coding chr4:185940787 chr4:185940787 stopgain 0.000 0 21 hm5C_associated_SNPs_48983 0 0 0 0 1 exosome 0.500231643916004 0 0.81929826 0.00046328783200722 hm5C_site_4303 DeepMRMD:0.81929826;iRNA_m5C:0.00046328783200722 4304 chr11 47283128 47283128 1 + C T COAD 47283128 + 47283108 47283148 41 TGGCACCAGATCCCCATAGCCGGGAGGCCCGTCAGCAGCGC TGGCACCAGATCCCCATAGCTGGGAGGCCCGTCAGCAGCGC Direct Loss 0.955888092362071 0 0.8949062 0 prediction 0.911776184724141 Functional Loss - NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47283128 chr11:47283128 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_48984 0 0 1 0 1 Ribosome 0.500231644015184 0 0.7898124 0.000463288030367215 hm5C_site_4304 DeepMRMD:0.7898124;iRNA_m5C:0.000463288030367215 4305 chr13 24466010 24466010 1 + G A UCEC 24466010 - 24465990 24466030 41 GGTCCTGAGGGGCCAAGGGGCAACATTGGGCCTTTGGGCCC GGTCCTGAGGGGCCAAGGGGTAACATTGGGCCTTTGGGCCC Direct Loss 0.955876078422653 0 0.73797774 0 prediction 0.911752156845305 Functional Loss - C1QTNF9B;PCOTH ENSG00000205863 CDS Human protein_coding chr13:24466010 chr13:24466010 synonymous SNV . 0 21 hm5C_associated_SNPs_48985 0 0 0 0 0 unknown 0.500231643921092 0 0.47595548 0.000463287842184856 hm5C_site_4305 DeepMRMD:0.47595548;iRNA_m5C:0.000463287842184856 Photic sneeze reflex 4306 chr16 31089217 31089217 1 + C T LUAD 31089217 + 31089197 31089237 41 GCTCGCCGAAGTGCAGACATCGGGGCTGAGGGTGCCCCCAG GCTCGCCGAAGTGCAGACATTGGGGCTGAGGGTGCCCCCAG Direct Loss 0.955872244022956 0 0.9531558 0 prediction 0.911744488045911 Functional Loss - ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31089217 chr16:31089217 synonymous SNV . 0 21 hm5C_associated_SNPs_48986 0 0 0 0 0 Endoplasmic reticulum 0.500231644243935 0 0.9063116 0.000463288487870805 hm5C_site_4306 DeepMRMD:0.9063116;iRNA_m5C:0.000463288487870805 4307 chrX 49099393 49099393 1 + C T UCEC 49099393 + 49099373 49099413 41 GGGCCATTGGGAGCCAAATTCGGGACCAGCTGGCACTGCCT GGGCCATTGGGAGCCAAATTTGGGACCAGCTGGCACTGCCT Direct Loss 0.955865449667654 0 0.94399893 0 prediction 0.911730899335309 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49099393 chrX:49099393 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_48987 0 0 0 0 2 Cytosol 0.500231643921092 0 0.88799786 0.000463287842184856 hm5C_site_4307 DeepMRMD:0.88799786;iRNA_m5C:0.000463287842184856 4308 chr1 111862928 111862928 1 + C T GBM 111862928 + 111862908 111862948 41 TAGCAGCTCTGGAGGCAGCTCGGGAGGCAGTGGATTCTGTG TAGCAGCTCTGGAGGCAGCTTGGGAGGCAGTGGATTCTGTG Direct Loss 0.955856437357149 0 0.9149374 0 prediction 0.911712874714298 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111862928 chr1:111862928 nonsynonymous SNV 0.371 0 21 hm5C_associated_SNPs_48988 0 0 0 0 1 exosome 0.500231643922514 0 0.8298748 0.000463287845028804 hm5C_site_4308 DeepMRMD:0.8298748;iRNA_m5C:0.000463287845028804 4309 chr13 31506863 31506863 1 + C A UCEC 31506863 + 31506843 31506883 41 CTGGGGCAGAATGGAACAGCCTGGGCCCAGGGCTCCGGATC CTGGGGCAGAATGGAACAGCATGGGCCCAGGGCTCCGGATC Direct Loss 0.95584883930471 0 0.77758855 0 prediction 0.911697678609419 Functional Loss - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31506863 chr13:31506863 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_48989 0 0 0 0 1 exosome 0.500231628608126 0 0.5551771 0.000463257216252844 hm5C_site_4309 DeepMRMD:0.5551771;iRNA_m5C:0.000463257216252844 4310 chr7 53103475 53103475 1 + C T LIHC 53103475 + 53103455 53103495 41 GCTCCCATGAGCAGGTCACCCAGCACGCCCCAGACCACGCC GCTCCCATGAGCAGGTCACCTAGCACGCCCCAGACCACGCC Direct Loss 0.95583489425416 0 0.39560172 0 prediction 0.911669788508319 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103475 chr7:53103475 synonymous SNV . 0 21 hm5C_associated_SNPs_48990 0 0 0 0 0 unknown 0.500231643921111 0 0 0.000463287842221716 hm5C_site_4310 DeepMRMD:0;iRNA_m5C:0.000463287842221716 4311 chr13 24466084 24466084 1 + C T SKCM 24466084 + 24466064 24466104 41 CCCCTGAGGCCCAGTCTCTCCTCGGAGGCCTTTCTCTCCCA CCCCTGAGGCCCAGTCTCTCTTCGGAGGCCTTTCTCTCCCA Direct Loss 0.955822092523957 0 0.63655174 0 prediction 0.911644185047913 Functional Loss - C1QTNF9B ENSG00000205863 CDS Human protein_coding chr13:24466084 chr13:24466084 nonsynonymous SNV 0.320 5 21 hm5C_associated_SNPs_48991 0 0 1 2 0 exosome 0.500231643734982 0 0.27310348 0.00046328746996438 hm5C_site_4311 DeepMRMD:0.27310348;iRNA_m5C:0.00046328746996438 4312 chr19 50093927 50093927 1 + C G rs537563181 50093927 + 50093907 50093947 41 GCCCCCGTGGTAGGCAGACGCGCGGGGAAATTCGGACCCAG GCCCCCGTGGTAGGCAGACGGGCGGGGAAATTCGGACCCAG Direct Loss 0.955820554643091 0 0.9009348 0 prediction 0.911641109286182 Functional Loss - PRRG2 ENSG00000126460 UTR3 Human protein_coding chr19:50093927 chr19:50093927 . . 0 21 hm5C_associated_SNPs_48992 0 0 0 0 0 Ribosome 0.500231643921092 0 0.8018696 0.000463287842184856 hm5C_site_4312 DeepMRMD:0.8018696;iRNA_m5C:0.000463287842184856 4313 chr22 35948035 35948035 1 + C T LUSC 35948035 + 35948015 35948055 41 ACATCAAGGCCAAGGTCCTTCGGGAAGGCCAGGCCCGTGAG ACATCAAGGCCAAGGTCCTTTGGGAAGGCCAGGCCCGTGAG Direct Loss 0.955816453889698 0 0.9061758 0 prediction 0.911632907779395 Functional Loss - RASD2 ENSG00000100302 CDS Human protein_coding chr22:35948035 chr22:35948035 nonsynonymous SNV 0.995 3 21 hm5C_associated_SNPs_48993 0 0 0 0 0 exosome 0.50023158985968 0 0.8123516 0.000463179719360163 hm5C_site_4313 DeepMRMD:0.8123516;iRNA_m5C:0.000463179719360163 4314 chr15 91488154 91488154 1 + C G LUSC 91488154 + 91488134 91488174 41 TTTTGGAAGTGGGGGGCTCTCTACAGGACCCTCCTGGGGAG TTTTGGAAGTGGGGGGCTCTGTACAGGACCCTCCTGGGGAG Direct Loss 0.955815165366794 0 0.87424767 0 prediction 0.911630330733588 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91488154 chr15:91488154 nonsynonymous SNV 0.452 0 21 hm5C_associated_SNPs_48994 0 0 1 0 1 Nucleus 0.500231643921092 0 0.74849534 0.000463287842184856 hm5C_site_4314 DeepMRMD:0.74849534;iRNA_m5C:0.000463287842184856 4315 chr6 17292121 17292121 1 + C A OV 17292121 + 17292101 17292141 41 AGCTGCATACGCACAATACTCAGCAGCTGCTGCTGCTGCCG AGCTGCATACGCACAATACTAAGCAGCTGCTGCTGCTGCCG Direct Loss 0.955809038321062 0 0.8562543 0 prediction 0.911618076642124 Functional Loss - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292121 chr6:17292121 stopgain 0.602 1 21 hm5C_associated_SNPs_48995 0 0 0 1 0 cytosol 0.500231592263384 0 0.7125086 0.00046318452676819 hm5C_site_4315 DeepMRMD:0.7125086;iRNA_m5C:0.00046318452676819 4316 chr6 146865181 146865181 1 + C A rs142273767 146865181 + 146865161 146865201 41 CAGCACTACCGGGCCACCATCGGGGTGGACTTCGCCCTCAA CAGCACTACCGGGCCACCATAGGGGTGGACTTCGCCCTCAA Direct Loss 0.955796112491224 0 0.96535325 0 prediction 0.911592224982449 Functional Loss - RAB32 ENSG00000118508 CDS Human protein_coding chr6:146865181 chr6:146865181 synonymous SNV . 0 21 hm5C_associated_SNPs_48996 0 0 1 0 1 Ribosome 0.500231643720168 0 0.9307065 0.00046328744033608 hm5C_site_4316 DeepMRMD:0.9307065;iRNA_m5C:0.00046328744033608 4317 chr10 4873008 4873008 1 + C T GBM 4873008 + 4872988 4873028 41 TCAAGGAAGGCGCTGTAAGACGGGAGGATCTGTTCATTGCC TCAAGGAAGGCGCTGTAAGATGGGAGGATCTGTTCATTGCC Direct Loss 0.955792125540493 0 0.48148486 0 prediction 0.911584251080985 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4873008 chr10:4873008 nonsynonymous SNV 0.021 4 21 hm5C_associated_SNPs_48997 0 0 0 1 1 chromatin 0.500231643921101 0 0 0.000463287842201066 hm5C_site_4317 DeepMRMD:0;iRNA_m5C:0.000463287842201066 4318 chr16 31092914 31092914 1 + C T LUAD 31092914 + 31092894 31092934 41 ACGGGCGGGTCCATGCACCCCGGGAGGGGCCTTTCACCTGC ACGGGCGGGTCCATGCACCCTGGGAGGGGCCTTTCACCTGC Direct Loss 0.955788555878164 0 0.8643452 0 prediction 0.911577111756329 Functional Loss - ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31092914 chr16:31092914 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_48998 0 0 0 0 0 Endoplasmic reticulum 0.500231652708084 0 0.7286904 0.000463305416168458 hm5C_site_4318 DeepMRMD:0.7286904;iRNA_m5C:0.000463305416168458 4319 chr2 232262533 232262533 1 + C A UCEC 232262533 + 232262513 232262553 41 GTCTCACCCCTGGTCAGTTTCTGCAGGAGCCTCCGCCACCC GTCTCACCCCTGGTCAGTTTATGCAGGAGCCTCCGCCACCC Direct Loss 0.955787118792827 0 0.7561976 0 prediction 0.911574237585654 Functional Loss - B3GNT7 ENSG00000156966 CDS Human protein_coding chr2:232262533 chr2:232262533 nonsynonymous SNV 0.075 0 21 hm5C_associated_SNPs_48999 0 0 0 0 1 exosome 0.500231738821945 0 0.5123952 0.000463477643889432 hm5C_site_4319 DeepMRMD:0.5123952;iRNA_m5C:0.000463477643889432 4320 chr13 21722190 21722190 1 + C A rs1046530 21722190 + 21722170 21722210 41 TGAAGGAGGAATCTTAAGACCGAGGGAGAAGAGCCAAGGAC TGAAGGAGGAATCTTAAGACAGAGGGAGAAGAGCCAAGGAC Direct Loss 0.955786982073622 0 0.8844899 0 prediction 0.911573964147245 Functional Loss - SAP18 ENSG00000150459 UTR3 Human protein_coding chr13:21722190 chr13:21722190 . . 0 21 hm5C_associated_SNPs_49000 0 0 1 0 0 Cytosol 0.500231643921077 0 0.7689798 0.000463287842154658 hm5C_site_4320 DeepMRMD:0.7689798;iRNA_m5C:0.000463287842154658 4321 chr3 129695958 129695958 1 + C T LUSC 129695958 + 129695938 129695978 41 ATGGTCAAGCGGGCCTTCTGCTGGGGCTCCTGGATGACCTG ATGGTCAAGCGGGCCTTCTGTTGGGGCTCCTGGATGACCTG Direct Loss 0.95577467262675 0 0.8835881 0 prediction 0.911549345253499 Functional Loss - TRH ENSG00000170893 CDS Human protein_coding chr3:129695958 chr3:129695958 synonymous SNV . 0 21 hm5C_associated_SNPs_49001 0 0 0 0 0 Cytosol 0.500231644088669 0 0.7671762 0.000463288177337207 hm5C_site_4321 DeepMRMD:0.7671762;iRNA_m5C:0.000463288177337207 4322 chr3 183824060 183824060 1 + C T COAD 183824060 + 183824040 183824080 41 GCTGCTCCACTGCAACAGCCCGGGGAGATGCTGTCCCACTG GCTGCTCCACTGCAACAGCCTGGGGAGATGCTGTCCCACTG Direct Loss 0.955766666974545 0 0.9053171 0 prediction 0.911533333949091 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183824060 chr3:183824060 nonsynonymous SNV 0.310 1 21 hm5C_associated_SNPs_49002 0 0 0 0 1 unknown 0.500231643921092 0 0.8106342 0.000463287842184856 hm5C_site_4322 DeepMRMD:0.8106342;iRNA_m5C:0.000463287842184856 4323 chr7 99972028 99972028 1 + C T rs139606576 99972028 + 99972008 99972048 41 AGGCAGCAGTGGCAGTCCATCGAGGGGACCAAACTCTCCAT AGGCAGCAGTGGCAGTCCATTGAGGGGACCAAACTCTCCAT Direct Loss 0.95574052204289 0 0.949695 0 prediction 0.91148104408578 Functional Loss - PILRA ENSG00000085514 CDS Human protein_coding chr7:99972028 chr7:99972028 synonymous SNV . 0 21 hm5C_associated_SNPs_49003 0 0 0 0 0 Nucleus 0.500231643921092 0 0.89939 0.000463287842184856 hm5C_site_4323 DeepMRMD:0.89939;iRNA_m5C:0.000463287842184856 4324 chr1 197889240 197889240 1 + C A LUAD 197889240 + 197889220 197889260 41 GCTGTGAATGTAAGCTGGCCCTCGAGTCCGAGCTCACCTGC GCTGTGAATGTAAGCTGGCCATCGAGTCCGAGCTCACCTGC Direct Loss 0.955737275067203 0 0.40344328 0 prediction 0.911474550134406 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197889240 chr1:197889240 nonsynonymous SNV 0.989 5 21 hm5C_associated_SNPs_49004 0 0 0 0 1 exosome 0.500231644112465 0 0 0.000463288224930025 hm5C_site_4324 DeepMRMD:0;iRNA_m5C:0.000463288224930025 4325 chr1 173743555 173743555 1 + C T ESCA 173743555 + 173743535 173743575 41 TATGCTGTAGGTGGCTCTGACGGGACATCTCCTCTCAACAC TATGCTGTAGGTGGCTCTGATGGGACATCTCCTCTCAACAC Direct Loss 0.955725831932484 0 0.88981116 0 prediction 0.911451663864967 Functional Loss - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173743555 chr1:173743555 synonymous SNV . 0 21 hm5C_associated_SNPs_49005 0 0 0 0 1 Cytosol 0.500231643922966 0 0.77962232 0.000463287845932969 hm5C_site_4325 DeepMRMD:0.77962232;iRNA_m5C:0.000463287845932969 4326 chr17 61851588 61851588 1 + C G rs9913551 61851588 + 61851568 61851608 41 GGCGGTGGTGGCGGTGGCGGCGGCGGTGGTGGTGGTGGCGG GGCGGTGGTGGCGGTGGCGGGGGCGGTGGTGGTGGTGGCGG Direct Loss 0.955724872654451 0 0.88129187 0 prediction 0.911449745308901 Functional Loss - DDX42 ENSG00000198231 UTR5 Human protein_coding chr17:61851588 chr17:61851588 . . 0 21 hm5C_associated_SNPs_49006 0 0 1 0 0 chromatin 0.500231643921092 0 0.76258374 0.000463287842184856 hm5C_site_4326 DeepMRMD:0.76258374;iRNA_m5C:0.000463287842184856 4327 chr6 3850301 3850301 1 + C T STAD 3850301 + 3850281 3850321 41 CCCTGGTCAGGGAGCGCGAGCGGCAGCTGGCCAAGCGCCAG CCCTGGTCAGGGAGCGCGAGTGGCAGCTGGCCAAGCGCCAG Direct Loss 0.955724366854333 0 0.8938812 0 prediction 0.911448733708665 Functional Loss - FAM50B ENSG00000145945 CDS Human protein_coding chr6:3850301 chr6:3850301 nonsynonymous SNV 0.967 2 21 hm5C_associated_SNPs_49007 0 0 0 0 0 exosome 0.500231643921092 0 0.7877624 0.000463287842184856 hm5C_site_4327 DeepMRMD:0.7877624;iRNA_m5C:0.000463287842184856 4328 chr15 77941245 77941245 1 + C G rs12324340 77941245 + 77941225 77941265 41 GTTCCCAAAGAGAGAGACAACAGGAACCCAGGCCTTGGTCT GTTCCCAAAGAGAGAGACAAGAGGAACCCAGGCCTTGGTCT Direct Loss 0.955714573187006 0 0.11387381 0 prediction 0.911429146374013 Functional Loss - LINGO1-AS1 ENSG00000259666 ncRNA_exonic Human antisense chr15:77941245 chr15:77941245 . . 0 21 hm5C_associated_SNPs_49008 0 0 0 0 0 unknown 0.500231643957403 0 0 0.000463287914806987 hm5C_site_4328 DeepMRMD:0;iRNA_m5C:0.000463287914806987 4329 chr11 60482498 60482498 1 + C T LUAD 60482498 + 60482478 60482518 41 TCTGCTCTGCCTACAGAACCCTGGAATGGCGATTTCTGGCG TCTGCTCTGCCTACAGAACCTTGGAATGGCGATTTCTGGCG Direct Loss 0.955704022348589 0 0.33960533 0 prediction 0.911408044697179 Functional Loss - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60482498 chr11:60482498 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49009 0 0 0 0 1 Cytosol 0.500231643920081 0 0 0.000463287840161364 hm5C_site_4329 DeepMRMD:0;iRNA_m5C:0.000463287840161364 Metabolic traits 4330 chr16 81069793 81069793 1 + C T GBM 81069793 + 81069773 81069813 41 GCGCTCAACATGCACCTAGTCAAGAGCCACCGCCTGCAGGT GCGCTCAACATGCACCTAGTTAAGAGCCACCGCCTGCAGGT Direct Loss 0.955686844846738 0 0.7506854 0 prediction 0.911373689693477 Functional Loss - ATMIN ENSG00000166454 CDS Human protein_coding chr16:81069793 chr16:81069793 synonymous SNV . 0 21 hm5C_associated_SNPs_49010 0 0 1 0 1 Cytosol 0.500231643980693 0 0.5013708 0.000463287961385728 hm5C_site_4330 DeepMRMD:0.5013708;iRNA_m5C:0.000463287961385728 4331 chr19 10395489 10395489 1 + C G rs112301533 10395489 + 10395469 10395509 41 ACTGGACGAGAGGGATTGTCCGGGAAACTGGACGTGGCCAG ACTGGACGAGAGGGATTGTCGGGGAAACTGGACGTGGCCAG Direct Loss 0.955684158503989 0 0.88924444 0 prediction 0.911368317007978 Functional Loss - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10395489 chr19:10395489 nonsynonymous SNV 0.024 3 21 hm5C_associated_SNPs_49011 0 0 1 0 1 Nucleus 0.500231643921092 0 0.77848888 0.000463287842184856 hm5C_site_4331 DeepMRMD:0.77848888;iRNA_m5C:0.000463287842184856 4332 chr6 26225530 26225530 1 + C T UCEC 26225530 + 26225510 26225550 41 GCCCTGGCACCGTGGCTCTGCGCGAGATCCGTCGCTACCAG GCCCTGGCACCGTGGCTCTGTGCGAGATCCGTCGCTACCAG Direct Loss 0.955675688088751 0 0.72729295 0 prediction 0.911351376177501 Functional Loss - HIST1H3E ENSG00000196966 CDS Human other chr6:26225530 chr6:26225530 nonsynonymous SNV 0.900 0 21 hm5C_associated_SNPs_49012 0 0 0 0 0 exosome 0.500231643696485 0 0.4545859 0.000463287392969969 hm5C_site_4332 DeepMRMD:0.4545859;iRNA_m5C:0.000463287392969969 Urinary metabolites (H-NMR features) 4333 chr19 30312684 30312684 1 + C A OV 30312684 + 30312664 30312704 41 TGTGACAGATGGAGCTTGTTCAGGAGATGAAATTCTCACCA TGTGACAGATGGAGCTTGTTAAGGAGATGAAATTCTCACCA Direct Loss 0.955667914476989 0 0.89169204 0 prediction 0.911335828953978 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30312684 chr19:30312684 stopgain 0.995 1 21 hm5C_associated_SNPs_49013 0 0 1 0 2 Ribosome 0.50023164390636 0 0.78338408 0.000463287812719315 hm5C_site_4333 DeepMRMD:0.78338408;iRNA_m5C:0.000463287812719315 Gamma glutamyl transferase levels 4334 chr15 65369624 65369624 1 + C G rs550724858 65369624 + 65369604 65369644 41 GCCCTGCGGCCCAGCAGCTACGCGGCCGTGAGCACGCACAC GCCCTGCGGCCCAGCAGCTAGGCGGCCGTGAGCACGCACAC Direct Loss 0.955667060278076 0 0.8350582 0 prediction 0.911334120556153 Functional Loss - KBTBD13 ENSG00000234438 CDS Human protein_coding chr15:65369624 chr15:65369624 stopgain 0.584 0 21 hm5C_associated_SNPs_49014 0 0 0 0 0 unknown 0.500231644003318 0 0.6701164 0.00046328800663531 hm5C_site_4334 DeepMRMD:0.6701164;iRNA_m5C:0.00046328800663531 4335 chr15 68118635 68118635 1 + C T LUSC 68118635 + 68118615 68118655 41 GCTGCGGCATGATCACTAAGCGAGAGGCCGAACGCCTGTGC GCTGCGGCATGATCACTAAGTGAGAGGCCGAACGCCTGTGC Direct Loss 0.955667016205464 0 0.8765587 0 prediction 0.911334032410928 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68118635 chr15:68118635 stopgain 0.984 1 21 hm5C_associated_SNPs_49015 0 0 0 0 0 exosome 0.50023164392181 0 0.7531174 0.000463287843619931 hm5C_site_4335 DeepMRMD:0.7531174;iRNA_m5C:0.000463287843619931 4336 chr6 27100982 27100982 1 + C T BRCA 27100982 + 27100962 27101002 41 GGCAACTATGCCGAGCGGGTCGGGGCCGGCGCGCCGGTGTA GGCAACTATGCCGAGCGGGTTGGGGCCGGCGCGCCGGTGTA Direct Loss 0.955665591741814 0 0.9222009 0 prediction 0.911331183483628 Functional Loss - HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27100982 chr6:27100982 synonymous SNV . 0 21 hm5C_associated_SNPs_49016 0 0 1 0 0 Ribosome 0.500231643999169 0 0.8444018 0.000463287998337503 hm5C_site_4336 DeepMRMD:0.8444018;iRNA_m5C:0.000463287998337503 4337 chrX 30254084 30254084 1 + C T UCEC 30254084 + 30254064 30254104 41 CGCTCCATGCACGTGAGAAACGCCAGCAGACCCGGGGTCAG CGCTCCATGCACGTGAGAAATGCCAGCAGACCCGGGGTCAG Direct Loss 0.955664599630594 0 0.82383657 0 prediction 0.911329199261188 Functional Loss - MAGEB3 ENSG00000198798 CDS Human protein_coding chrX:30254084 chrX:30254084 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49017 0 0 0 0 0 unknown 0.500231641310059 0 0.64767314 0.000463282620118299 hm5C_site_4337 DeepMRMD:0.64767314;iRNA_m5C:0.000463282620118299 4338 chr16 3063471 3063471 1 + C T HNSC 3063471 + 3063451 3063491 41 TGGAAGGTGACCGCCTTCATCGGCAACAGCATCGTGGTGGC TGGAAGGTGACCGCCTTCATTGGCAACAGCATCGTGGTGGC Direct Loss 0.95565043401088 0 0.87483305 0 prediction 0.911300868021761 Functional Loss - CLDN9 ENSG00000213937 CDS Human protein_coding chr16:3063471 chr16:3063471 synonymous SNV . 0 21 hm5C_associated_SNPs_49018 0 0 0 0 0 exosome 0.500231643921091 0 0.7496661 0.000463287842182414 hm5C_site_4338 DeepMRMD:0.7496661;iRNA_m5C:0.000463287842182414 4339 chr6 43413574 43413574 1 + C T COAD 43413574 + 43413554 43413594 41 GCCACTACAGGGCCTCCTCACGGGAGCTGCGGCGCCTGGGC GCCACTACAGGGCCTCCTCATGGGAGCTGCGGCGCCTGGGC Direct Loss 0.955648442610919 0 0.9546937 0 prediction 0.911296885221838 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43413574 chr6:43413574 nonsynonymous SNV 0.984 5 21 hm5C_associated_SNPs_49019 0 0 0 0 0 chromatin 0.500231643921584 0 0.9093874 0.000463287843168958 hm5C_site_4339 DeepMRMD:0.9093874;iRNA_m5C:0.000463287843168958 4340 chr5 140573506 140573506 1 + C T KIRC 140573506 + 140573486 140573526 41 CCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCCCGCC CCTCCTACACCCTGTTCGTCTGCGAGAACAACAGCCCCGCC Direct Loss 0.955640790175682 0 0.15521574 0 prediction 0.911281580351364 Functional Loss - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573506 chr5:140573506 nonsynonymous SNV 0.948 1 21 hm5C_associated_SNPs_49020 0 0 0 0 0 exosome 0.500231643921082 0 0 0.00046328784216465 hm5C_site_4340 DeepMRMD:0;iRNA_m5C:0.00046328784216465 4341 chr2 242098754 242098754 1 + C T UCEC 242098754 + 242098734 242098774 41 ATCTGGAGGCGCTAACAGAGCTGGAGTGAGTCATGAGACCC ATCTGGAGGCGCTAACAGAGTTGGAGTGAGTCATGAGACCC Direct Loss 0.955628734933226 0 0.2381233 0 prediction 0.911257469866452 Functional Loss - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242098754 chr2:242098754 synonymous SNV . 0 21 hm5C_associated_SNPs_49021 0 0 1 0 1 Ribosome 0.500231641767275 0 0 0.000463283534550163 hm5C_site_4341 DeepMRMD:0;iRNA_m5C:0.000463283534550163 4342 chr8 55371845 55371845 1 + C A rs547235715 55371845 + 55371825 55371865 41 GCCGCGTGGCCATGGACGGCCTGGGCCTCCAGTTCCCCGAG GCCGCGTGGCCATGGACGGCATGGGCCTCCAGTTCCCCGAG Direct Loss 0.95562811914488 0 0.8622403 0 prediction 0.91125623828976 Functional Loss - SOX17 ENSG00000164736 CDS Human protein_coding chr8:55371845 chr8:55371845 nonsynonymous SNV 0.910 1 21 hm5C_associated_SNPs_49022 0 0 0 0 0 Cytosol 0.500231643921094 0 0.7244806 0.000463287842188409 hm5C_site_4342 DeepMRMD:0.7244806;iRNA_m5C:0.000463287842188409 4343 chr19 4432135 4432135 1 + C T SKCM 4432135 + 4432115 4432155 41 AGCAGTTCGCAGCCTGCTTCCTGGAGACCCTGCCGGCCCAG AGCAGTTCGCAGCCTGCTTCTTGGAGACCCTGCCGGCCCAG Direct Loss 0.955607043766655 0 0.8119687 0 prediction 0.911214087533309 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4432135 chr19:4432135 synonymous SNV . 0 21 hm5C_associated_SNPs_49023 0 0 1 0 0 Nucleus 0.500231643920901 0 0.6239374 0.000463287841801163 hm5C_site_4343 DeepMRMD:0.6239374;iRNA_m5C:0.000463287841801163 4344 chr19 7712143 7712143 1 + C A rs139200597 7712143 + 7712123 7712163 41 GCCGCTGTCAGGTGAGGCCCCGGGGCCGCCCCCGCCCACGC GCCGCTGTCAGGTGAGGCCCAGGGGCCGCCCCCGCCCACGC Direct Loss 0.955589638463621 0 0.9142838 0 prediction 0.911179276927243 Functional Loss - STXBP2 ENSG00000076944 intronic Human protein_coding chr19:7712143 chr19:7712143 . . 0 21 hm5C_associated_SNPs_49024 0 0 1 0 1 chromatin 0.500231643911787 0 0.8285676 0.00046328782357441 hm5C_site_4344 DeepMRMD:0.8285676;iRNA_m5C:0.00046328782357441 4345 chr10 131565221 131565221 1 + C T GBM 131565221 + 131565201 131565241 41 AGGGGCCTGGCTCAAGGGAGCGGGAGCTACCTCGGGCTCCC AGGGGCCTGGCTCAAGGGAGTGGGAGCTACCTCGGGCTCCC Direct Loss 0.955571903686587 0 0.9237703 0 prediction 0.911143807373173 Functional Loss - MGMT ENSG00000170430 CDS Human protein_coding chr10:131565221 chr10:131565221 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49025 0 0 1 0 0 Ribosome 0.500231643921133 0 0.8475406 0.000463287842265236 hm5C_site_4345 DeepMRMD:0.8475406;iRNA_m5C:0.000463287842265236 4346 chr19 11560163 11560163 1 + C T PRAD 11560163 + 11560143 11560183 41 GTACCTCATGGAGCTGATGACGCCAGCCGCCTGCCCGGAGC GTACCTCATGGAGCTGATGATGCCAGCCGCCTGCCCGGAGC Direct Loss 0.955544002979396 0 0.86918855 0 prediction 0.911088005958793 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11560163 chr19:11560163 nonsynonymous SNV 0.927 4 21 hm5C_associated_SNPs_49026 0 0 1 0 2 Nucleus 0.500195688842371 0 0.7383771 0.000391377684742844 hm5C_site_4346 DeepMRMD:0.7383771;iRNA_m5C:0.000391377684742844 4347 chr16 3063859 3063859 1 + C T CESC 3063859 + 3063839 3063879 41 AGCTGGGGGCCTCCCTCTACCTGGGCTGGGCGGCGGCTGCA AGCTGGGGGCCTCCCTCTACTTGGGCTGGGCGGCGGCTGCA Direct Loss 0.955524251656026 0 0.892907 0 prediction 0.911048503312051 Functional Loss - CLDN9 ENSG00000213937 CDS Human protein_coding chr16:3063859 chr16:3063859 synonymous SNV . 0 21 hm5C_associated_SNPs_49027 0 0 0 0 0 exosome 0.500231643927791 0 0.785814 0.000463287855581918 hm5C_site_4347 DeepMRMD:0.785814;iRNA_m5C:0.000463287855581918 4348 chr22 44340642 44340642 1 + C G rs144730517 44340642 + 44340622 44340662 41 GGTGACCTCACAGGTGTTCACTCGAGTGCTGATGTGTCTGC GGTGACCTCACAGGTGTTCAGTCGAGTGCTGATGTGTCTGC Direct Loss 0.955513984180592 0 0.5086182 0 prediction 0.911027968361185 Functional Loss - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44340642 chr22:44340642 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49028 0 0 1 0 2 cytosol 0.500231643924461 0 0.0172364 0.000463287848922134 hm5C_site_4348 DeepMRMD:0.0172364;iRNA_m5C:0.000463287848922134 4349 chr19 46375466 46375466 1 + C G UCEC 46375466 + 46375446 46375486 41 CTCAGGACCCCTGGCACCCCCAGCACCTGCAGCCCCCCTGG CTCAGGACCCCTGGCACCCCGAGCACCTGCAGCCCCCCTGG Direct Loss 0.955501068035351 0 0.72395205 0 prediction 0.911002136070701 Functional Loss - FOXA3 ENSG00000170608 CDS Human protein_coding chr19:46375466 chr19:46375466 nonsynonymous SNV 0.664 1 21 hm5C_associated_SNPs_49029 0 0 1 0 0 Cytosol 0.500231643921092 0 0.4479041 0.000463287842184856 hm5C_site_4349 DeepMRMD:0.4479041;iRNA_m5C:0.000463287842184856 4350 chr9 71395167 71395167 1 + C G PRAD 71395167 + 71395147 71395187 41 GGCGGTGGCAGCGGCGGCGGCGGGGGCCTCAGGAGGTCTAA GGCGGTGGCAGCGGCGGCGGGGGGGGCCTCAGGAGGTCTAA Direct Loss 0.955499062131047 0 0.9326935 0 prediction 0.910998124262094 Functional Loss - FAM122A ENSG00000187866 CDS Human protein_coding chr9:71395167 chr9:71395167 synonymous SNV . 0 21 hm5C_associated_SNPs_49030 0 0 1 0 0 chromatin 0.500231229180452 0 0.865387 0.000462458360903195 hm5C_site_4350 DeepMRMD:0.865387;iRNA_m5C:0.000462458360903195 4351 chr19 30303617 30303617 1 + C A rs139551337 30303617 + 30303597 30303637 41 GATGCGAAGGAGCGGGACACCATGAAGGAGGACGGCGGCGC GATGCGAAGGAGCGGGACACAATGAAGGAGGACGGCGGCGC Direct Loss 0.955497994187855 0 0.29913273 0 prediction 0.91099598837571 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30303617 chr19:30303617 synonymous SNV . 0 21 hm5C_associated_SNPs_49031 0 0 1 0 2 Ribosome 0.500231635172149 0 0 0.000463270344297939 hm5C_site_4351 DeepMRMD:0;iRNA_m5C:0.000463270344297939 4352 chr20 61167787 61167787 1 + C T rs149173911 61167787 + 61167767 61167807 41 GTGTGAAGGGCAACAGCTGACGGGGAAGTTCAGCACATCTG GTGTGAAGGGCAACAGCTGATGGGGAAGTTCAGCACATCTG Direct Loss 0.955486573115564 0 0.8726816 0 prediction 0.910973146231129 Functional Loss - MIR1-1HG ENSG00000174407 CDS Human antisense chr20:61167787 chr20:61167787 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49032 0 0 0 0 0 unknown 0.500233166597209 0 0.7453632 0.000466333194418356 hm5C_site_4352 DeepMRMD:0.7453632;iRNA_m5C:0.000466333194418356 Plateletcrit 4353 chr6 26240776 26240776 1 + C T CESC 26240776 + 26240756 26240796 41 ATCCGTCGCTTGGCCCGACGCGGCGGCGTGAAACGCATTTC ATCCGTCGCTTGGCCCGACGTGGCGGCGTGAAACGCATTTC Direct Loss 0.955484080368314 0 0.7345301 0 prediction 0.910968160736628 Functional Loss - HIST1H4F ENSG00000198327 CDS Human other chr6:26240776 chr6:26240776 synonymous SNV . 0 21 hm5C_associated_SNPs_49033 0 0 0 0 0 exosome 0.500231610101076 0 0.4690602 0.000463220202152836 hm5C_site_4353 DeepMRMD:0.4690602;iRNA_m5C:0.000463220202152836 4354 chr9 131486769 131486769 1 + C T rs111925909 131486769 + 131486749 131486789 41 CCAGCGGCTTGCTGTGAGTCCGGGAGGCAAAATTGTACCCA CCAGCGGCTTGCTGTGAGTCTGGGAGGCAAAATTGTACCCA Direct Loss 0.955482723902852 0 0.8704754 0 prediction 0.910965447805703 Functional Loss - LOC100506100 ENSG00000223478 ncRNA_exonic Human antisense chr9:131486769 chr9:131486769 . . 0 21 hm5C_associated_SNPs_49034 0 0 1 0 0 unknown 0.500231643921092 0 0.7409508 0.000463287842184856 hm5C_site_4354 DeepMRMD:0.7409508;iRNA_m5C:0.000463287842184856 4355 chr6 401609 401609 1 + C A UCEC 401609 + 401589 401629 41 TTGAGAAGCTGCTGAGCCACCTGGAGAGGGGCGTGGTCCTC TTGAGAAGCTGCTGAGCCACATGGAGAGGGGCGTGGTCCTC Direct Loss 0.955482286006297 0 0.7792759 0 prediction 0.910964572012595 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:401609 chr6:401609 nonsynonymous SNV 0.993 5 21 hm5C_associated_SNPs_49035 0 0 0 0 0 exosome 0.500231643921122 0 0.5585518 0.000463287842243476 hm5C_site_4355 DeepMRMD:0.5585518;iRNA_m5C:0.000463287842243476 4356 chr6 108497812 108497812 1 + C T CESC 108497812 + 108497792 108497832 41 GGCCGCCGCGCACTTTCCCTCGGCGGCGCTCCCTGCGCCGG GGCCGCCGCGCACTTTCCCTTGGCGGCGCTCCCTGCGCCGG Direct Loss 0.955477617881843 0 0.938745 0 prediction 0.910955235763686 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108497812 chr6:108497812 nonsynonymous SNV 0.656 1 21 hm5C_associated_SNPs_49036 0 0 0 0 0 exosome 0.50023164391967 0 0.87749 0.000463287839340465 hm5C_site_4356 DeepMRMD:0.87749;iRNA_m5C:0.000463287839340465 4357 chr1 47138637 47138637 1 + C T rs142885686 47138637 + 47138617 47138657 41 ACTGGAGGAAGAACTTGAGGCGGGAAGAGCATGCCCAGCAG ACTGGAGGAAGAACTTGAGGTGGGAAGAGCATGCCCAGCAG Direct Loss 0.955470287290911 0 0.8516177 0 prediction 0.910940574581823 Functional Loss - TEX38 ENSG00000186118 CDS Human protein_coding chr1:47138637 chr1:47138637 nonsynonymous SNV 0.139 3 21 hm5C_associated_SNPs_49037 0 0 0 0 0 nucleus 0.500231643921092 0 0.7032354 0.00046328784218419 hm5C_site_4357 DeepMRMD:0.7032354;iRNA_m5C:0.00046328784218419 4358 chr17 2278872 2278872 1 + C G rs61739394 2278872 + 2278852 2278892 41 CCTGAGCAGGAAGCAGGACCCGGGACTCCGGGCACCGCCGT CCTGAGCAGGAAGCAGGACCGGGGACTCCGGGCACCGCCGT Direct Loss 0.955453438728171 0 0.9101465 0 prediction 0.910906877456342 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2278872 chr17:2278872 synonymous SNV . 0 21 hm5C_associated_SNPs_49038 0 0 1 0 1 Cytosol 0.500231643921092 0 0.820293 0.000463287842184856 hm5C_site_4358 DeepMRMD:0.820293;iRNA_m5C:0.000463287842184856 4359 chr7 300063 300063 1 + C G rs139509186 300063 + 300043 300083 41 AGGACGGGATCATCCGGAGTCGGGAGCTGCTGCCACAGGAG AGGACGGGATCATCCGGAGTGGGGAGCTGCTGCCACAGGAG Direct Loss 0.955448674398498 0 0.92275554 0 prediction 0.910897348796996 Functional Loss - FAM20C ENSG00000177706 UTR3 Human protein_coding chr7:300063 chr7:300063 . . 0 21 hm5C_associated_SNPs_49039 0 0 1 0 0 Ribosome 0.500233524149965 0 0.84551108 0.000467048299929829 hm5C_site_4359 DeepMRMD:0.84551108;iRNA_m5C:0.000467048299929829 4360 chr17 62223780 62223780 1 + C A KIRP 62223780 + 62223760 62223800 41 GAGCATGTGCTTGCGCATAACTGGGGCCGCCTGGCCTCCCG GAGCATGTGCTTGCGCATAAATGGGGCCGCCTGGCCTCCCG Direct Loss 0.955441084949492 0 0.9405995 0 prediction 0.910882169898985 Functional Loss - SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223780 chr17:62223780 . . 0 21 hm5C_associated_SNPs_49040 0 0 1 0 0 unknown 0.500232053679747 0 0.881199 0.000464107359494204 hm5C_site_4360 DeepMRMD:0.881199;iRNA_m5C:0.000464107359494204 4361 chr5 161524751 161524751 1 + C A LUSC 161524751 + 161524731 161524771 41 AGCAACATGGTGGGGAAAATCTGGATTCCAGACACTTTCTT AGCAACATGGTGGGGAAAATATGGATTCCAGACACTTTCTT Direct Loss 0.9554402459327 0 0.29249552 0 prediction 0.910880491865401 Functional Loss - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161524751 chr5:161524751 synonymous SNV . 0 21 hm5C_associated_SNPs_49041 0 0 0 0 0 exosome 0.500231643921092 0 0 0.00046328784218419 hm5C_site_4361 DeepMRMD:0;iRNA_m5C:0.00046328784218419 4362 chr16 230481 230481 1 + C A rs1005364 230481 + 230461 230501 41 GGGCGCGGCGGGTTCCAGCGCGGGGATGGCGCTGTCCGCGG GGGCGCGGCGGGTTCCAGCGAGGGGATGGCGCTGTCCGCGG Direct Loss 0.955439363693921 0 0.9085981 0 prediction 0.910878727387842 Functional Loss - HBQ1 ENSG00000086506 UTR5 Human protein_coding chr16:230481 chr16:230481 . . 0 21 hm5C_associated_SNPs_49042 0 0 1 0 1 exosome 0.500231643921092 0 0.8171962 0.000463287842184856 hm5C_site_4362 DeepMRMD:0.8171962;iRNA_m5C:0.000463287842184856 4363 chr1 209849252 209849252 1 + C T SARC 209849252 + 209849232 209849272 41 CCGCCCTGGAGCGACAGGCTCTCCAGAAGCAAGCCCTGCAG CCGCCCTGGAGCGACAGGCTTTCCAGAAGCAAGCCCTGCAG Direct Loss 0.955433730529157 0 0.94455093 0 prediction 0.910867461058315 Functional Loss - G0S2 ENSG00000123689 CDS Human protein_coding chr1:209849252 chr1:209849252 nonsynonymous SNV 0.166 1 21 hm5C_associated_SNPs_49043 0 0 0 0 0 exosome 0.500231643921092 0 0.88910186 0.000463287842184856 hm5C_site_4363 DeepMRMD:0.88910186;iRNA_m5C:0.000463287842184856 4364 chr6 137245579 137245579 1 + C T UCEC 137245579 + 137245559 137245599 41 AGTGGAGACCAGCTGCCGTTCGTGATGGAGGAGCTGCCCGG AGTGGAGACCAGCTGCCGTTTGTGATGGAGGAGCTGCCCGG Direct Loss 0.955433028064977 0 0.46729854 0 prediction 0.910866056129954 Functional Loss - SLC35D3 ENSG00000182747 CDS Human protein_coding chr6:137245579 chr6:137245579 synonymous SNV . 0 21 hm5C_associated_SNPs_49044 0 0 0 0 0 exosome 0.500231643921091 0 0 0.000463287842181748 hm5C_site_4364 DeepMRMD:0;iRNA_m5C:0.000463287842181748 4365 chr6 84563453 84563453 1 + C A LUSC 84563453 + 84563433 84563473 41 CCCTGGGTGGACGCCGGAGGCAAGAAAGAAGAGGAGACGCC CCCTGGGTGGACGCCGGAGGAAAGAAAGAAGAGGAGACGCC Direct Loss 0.955415780838583 0 0.545624 0 prediction 0.910831561677165 Functional Loss - RIPPLY2 ENSG00000203877 CDS Human protein_coding chr6:84563453 chr6:84563453 synonymous SNV . 0 21 hm5C_associated_SNPs_49045 0 0 0 0 2 exosome 0.500231643895396 0 0.091248 0.000463287790792188 hm5C_site_4365 DeepMRMD:0.091248;iRNA_m5C:0.000463287790792188 4366 chr11 113659978 113659978 1 + C T STAD 113659978 + 113659958 113659998 41 CCGGGAGGGAGGTTCGGCGGCGGGAGGCAGCATGTAGGTTG CCGGGAGGGAGGTTCGGCGGTGGGAGGCAGCATGTAGGTTG Direct Loss 0.955411191919537 0 0.9042194 0 prediction 0.910822383839074 Functional Loss - CLDN25;USP28 ENSG00000255870;ENSG00000256167 ncRNA_exonic Human other chr11:113659978 chr11:113659978 . . 0 21 hm5C_associated_SNPs_49046 0 0 0 0 0 unknown 0.500231957914289 0 0.8084388 0.000463915828577077 hm5C_site_4366 DeepMRMD:0.8084388;iRNA_m5C:0.000463915828577077 4367 chr20 2312766 2312766 1 + C T rs149539401 2312766 + 2312746 2312786 41 GAACAGGAGCCCAGCATCATCGGGAAGCTGAAGGTCGCTGG GAACAGGAGCCCAGCATCATTGGGAAGCTGAAGGTCGCTGG Direct Loss 0.955408615110319 0 0.9185189 0 prediction 0.910817230220638 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2312766 chr20:2312766 synonymous SNV . 0 21 hm5C_associated_SNPs_49047 0 0 0 0 0 exosome 0.500231648092363 0 0.8370378 0.000463296184725737 hm5C_site_4367 DeepMRMD:0.8370378;iRNA_m5C:0.000463296184725737 4368 chr11 70282413 70282413 1 + C T PRAD 70282413 + 70282393 70282433 41 TCATCTCCTTCCTGAGGAGCCGGGAGGCTGGACCAGTCCCG TCATCTCCTTCCTGAGGAGCTGGGAGGCTGGACCAGTCCCG Direct Loss 0.955402649698935 0 0.9003925 0 prediction 0.910805299397869 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70282413 chr11:70282413 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_49048 0 0 1 0 1 Ribosome 0.500231643921092 0 0.800785 0.000463287842184856 hm5C_site_4368 DeepMRMD:0.800785;iRNA_m5C:0.000463287842184856 4369 chr17 53345347 53345347 1 + C A OV 53345347 + 53345327 53345367 41 CCTGGGCTGCAGCCAGCTTCCTCGGCTGCCCCCTCGGTCAT CCTGGGCTGCAGCCAGCTTCATCGGCTGCCCCCTCGGTCAT Direct Loss 0.95539911592154 0 0.08707076 0 prediction 0.91079823184308 Functional Loss - HLF ENSG00000108924 CDS Human protein_coding chr17:53345347 chr17:53345347 synonymous SNV . 0 21 hm5C_associated_SNPs_49049 0 0 0 0 0 cytosol 0.50023164405201 0 0 0.000463288104019188 hm5C_site_4369 DeepMRMD:0;iRNA_m5C:0.000463288104019188 4370 chr12 72092833 72092833 1 + C T SKCM 72092833 + 72092813 72092853 41 TATTGCATTTGGTGGTTTAGCTGGATTACTAGGATCAATTG TATTGCATTTGGTGGTTTAGTTGGATTACTAGGATCAATTG Direct Loss 0.955394787540805 0 0.86698234 0 prediction 0.910789575081611 Functional Loss - TMEM19 ENSG00000139291 CDS Human protein_coding chr12:72092833 chr12:72092833 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49050 0 0 1 0 1 Endoplasmic reticulum 0.500231643923389 0 0.73396468 0.000463287846778959 hm5C_site_4370 DeepMRMD:0.73396468;iRNA_m5C:0.000463287846778959 4371 chr7 53103400 53103400 1 + C T UCEC 53103400 + 53103380 53103420 41 CCGGCCGAGTCCGCAGACCTCGGGAACTTCTGGAAGGCGGG CCGGCCGAGTCCGCAGACCTTGGGAACTTCTGGAAGGCGGG Direct Loss 0.955381574585964 0 0.91649497 0 prediction 0.910763149171928 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103400 chr7:53103400 synonymous SNV . 0 21 hm5C_associated_SNPs_49051 0 0 0 0 0 unknown 0.500231643926338 0 0.83298994 0.000463287852676908 hm5C_site_4371 DeepMRMD:0.83298994;iRNA_m5C:0.000463287852676908 4372 chr10 21805188 21805188 1 + G T UCEC 21805188 - 21805168 21805208 41 AGTCGCCGGCGGAGTGGAATCTGCAGAGCTGGGCCCCCAAA AGTCGCCGGCGGAGTGGAATATGCAGAGCTGGGCCCCCAAA Direct Loss 0.955361870060635 0 0.8511739 0 prediction 0.910723740121269 Functional Loss - SKIDA1 ENSG00000180592 CDS Human protein_coding chr10:21805188 chr10:21805188 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_49052 0 0 0 0 0 Nucleus 0.50023164366029 0 0.7023478 0.000463287320580319 hm5C_site_4372 DeepMRMD:0.7023478;iRNA_m5C:0.000463287320580319 4373 chr9 101589132 101589132 1 + C A LUSC 101589132 + 101589112 101589152 41 GCCTGGTGCGAGCCCGGCTGCTGGGGGCGTCTGCGGCGAGG GCCTGGTGCGAGCCCGGCTGATGGGGGCGTCTGCGGCGAGG Direct Loss 0.955357678400997 0 0.88972294 0 prediction 0.910715356801994 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101589132 chr9:101589132 nonsynonymous SNV 0.666 4 21 hm5C_associated_SNPs_49053 0 0 0 0 2 Ribosome 0.500231643861567 0 0.77944588 0.000463287723134309 hm5C_site_4373 DeepMRMD:0.77944588;iRNA_m5C:0.000463287723134309 4374 chr1 248084827 248084827 1 + C A HNSC 248084827 + 248084807 248084847 41 GCTTCCCATATTGCGGTGCACACGAGATCGATCACTTCTTC GCTTCCCATATTGCGGTGCAAACGAGATCGATCACTTCTTC Direct Loss 0.955354574635427 0 0.2993408 0 prediction 0.910709149270853 Functional Loss - OR2T8 ENSG00000177462 CDS Human protein_coding chr1:248084827 chr1:248084827 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49054 0 0 0 0 0 exosome 0.500231644007497 0 0 0.000463288014993735 hm5C_site_4374 DeepMRMD:0;iRNA_m5C:0.000463288014993735 4375 chr1 152692617 152692617 1 + C G CESC 152692617 + 152692597 152692637 41 CTGTGAGAATTCGGGAAGCTCTGGATGCTGTGGTTCTGGGG CTGTGAGAATTCGGGAAGCTGTGGATGCTGTGGTTCTGGGG Direct Loss 0.955351879897465 0 0.8848077 0 prediction 0.91070375979493 Functional Loss - C1orf68 ENSG00000198854 CDS Human protein_coding chr1:152692617 chr1:152692617 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_49055 0 0 0 0 0 exosome 0.500231642076193 0 0.7696154 0.00046328415238639 hm5C_site_4375 DeepMRMD:0.7696154;iRNA_m5C:0.00046328415238639 4376 chr17 62079162 62079162 1 + C A UCEC 62079162 + 62079142 62079182 41 AACTGCACCAGCTTCCTGCTCTGGATACAGCCCCGGAGCCG AACTGCACCAGCTTCCTGCTATGGATACAGCCCCGGAGCCG Direct Loss 0.955326598131779 0 0.5043719 0 prediction 0.910653196263559 Functional Loss - PRR29 ENSG00000224383 CDS Human protein_coding chr17:62079162 chr17:62079162 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49056 0 0 0 0 1 exosome 0.500231643921011 0 0.00874379999999997 0.000463287842022542 hm5C_site_4376 DeepMRMD:0.00874379999999997;iRNA_m5C:0.000463287842022542 4377 chr8 24771483 24771483 1 + G A COAD 24771483 - 24771463 24771503 41 GCCGAGCTGTAAGCGAGGCGCGGGGCGAGCATGCTGCGCTT GCCGAGCTGTAAGCGAGGCGTGGGGCGAGCATGCTGCGCTT Direct Loss 0.955319282852399 0 0.9419694 0 prediction 0.910638565704798 Functional Loss - NEFM ENSG00000104722 CDS Human protein_coding chr8:24771483 chr8:24771483 synonymous SNV . 0 21 hm5C_associated_SNPs_49057 0 0 0 0 0 exosome 0.500231643921094 0 0.8839388 0.000463287842188187 hm5C_site_4377 DeepMRMD:0.8839388;iRNA_m5C:0.000463287842188187 4378 chrX 46719498 46719498 1 + C T rs1805147 46719498 + 46719478 46719518 41 AGGATGCTCAAAGGGTTTTTCGGGAAAAAGCACCTGACTTC AGGATGCTCAAAGGGTTTTTTGGGAAAAAGCACCTGACTTC Direct Loss 0.955319215573084 0 0.9083562 0 prediction 0.910638431146167 Functional Loss - RP2 ENSG00000102218 CDS Human protein_coding chrX:46719498 chrX:46719498 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_49058 2 0 1 0 2 Ribosome 0.500231642745578 0 0.8167124 0.000463285491155263 hm5C_site_4378 DeepMRMD:0.8167124;iRNA_m5C:0.000463285491155263 not specified not specified 4379 chr3 184297566 184297566 1 + C T COAD 184297566 + 184297546 184297586 41 ACGCTGAAGGTGGGCTACACCGAGAGGCAGCGGCGGGACTT ACGCTGAAGGTGGGCTACACTGAGAGGCAGCGGCGGGACTT Direct Loss 0.955299543519475 0 0.91116714 0 prediction 0.910599087038951 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184297566 chr3:184297566 synonymous SNV . 0 21 hm5C_associated_SNPs_49059 0 0 0 0 1 Endoplasmic reticulum 0.500231643921101 0 0.82233428 0.000463287842201288 hm5C_site_4379 DeepMRMD:0.82233428;iRNA_m5C:0.000463287842201288 4380 chr3 111732374 111732374 1 + C T LGG 111732374 + 111732354 111732394 41 CAGGCGGGCATGACAGGGTACGGGATGCCCAGGCAGATCAT CAGGCGGGCATGACAGGGTATGGGATGCCCAGGCAGATCAT Direct Loss 0.955281374071117 0 0.9090522 0 prediction 0.910562748142234 Functional Loss - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111732374 chr3:111732374 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_49060 0 0 0 0 0 Endoplasmic reticulum 0.500231643921093 0 0.8181044 0.000463287842185967 hm5C_site_4380 DeepMRMD:0.8181044;iRNA_m5C:0.000463287842185967 4381 chr1 229438681 229438681 1 + C T UCEC 229438681 + 229438661 229438701 41 CTTGAGACAGCTGAGGTCACCGCGGCGCGCACAGGCCCCGA CTTGAGACAGCTGAGGTCACTGCGGCGCGCACAGGCCCCGA Direct Loss 0.955275313245357 0 0.45121974 0 prediction 0.910550626490713 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438681 chr1:229438681 nonsynonymous SNV 0.407 1 21 hm5C_associated_SNPs_49061 0 0 1 0 2 Ribosome 0.500231643921099 0 0 0.000463287842198401 hm5C_site_4381 DeepMRMD:0;iRNA_m5C:0.000463287842198401 4382 chr20 31876618 31876618 1 + C T HNSC 31876618 + 31876598 31876638 41 TGCCGCTGCTCAGTGCCATGCGGGAAAAGCCAGCCGGAGGC TGCCGCTGCTCAGTGCCATGTGGGAAAAGCCAGCCGGAGGC Direct Loss 0.955273808569685 0 0.8980782 0 prediction 0.91054761713937 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31876618 chr20:31876618 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_49062 0 0 0 0 2 exosome 0.50023394004914 0 0.7961564 0.000467880098279805 hm5C_site_4382 DeepMRMD:0.7961564;iRNA_m5C:0.000467880098279805 4383 chr11 56949896 56949896 1 + C T SKCM 56949896 + 56949876 56949916 41 ATGTGCCAGCCGACATGTTCCAGGAGGCCCATGGGCTAGTC ATGTGCCAGCCGACATGTTCTAGGAGGCCCATGGGCTAGTC Direct Loss 0.955236938201302 0 0.4243719 0 prediction 0.910473876402604 Functional Loss - LRRC55 ENSG00000183908 CDS Human protein_coding chr11:56949896 chr11:56949896 stopgain 0.967 0 21 hm5C_associated_SNPs_49063 0 0 0 0 0 exosome 0.500232164167852 0 0 0.000464328335704867 hm5C_site_4383 DeepMRMD:0;iRNA_m5C:0.000464328335704867 4384 chr4 8308395 8308395 1 + C G rs15987 8308395 + 8308375 8308415 41 CATCTGATCCCTTTGGGGTGCGGGGGTGGGGTCCAGCCCAG CATCTGATCCCTTTGGGGTGGGGGGGTGGGGTCCAGCCCAG Direct Loss 0.955234177243999 0 0.9121089 0 prediction 0.910468354487999 Functional Loss - HTRA3 ENSG00000170801 UTR3 Human protein_coding chr4:8308395 chr4:8308395 . . 0 21 hm5C_associated_SNPs_49064 0 0 0 0 0 exosome 0.500231643921092 0 0.8242178 0.000463287842184856 hm5C_site_4384 DeepMRMD:0.8242178;iRNA_m5C:0.000463287842184856 4385 chr12 124146392 124146392 1 + C T rs188194137 124146392 + 124146372 124146412 41 AGCTCTGTCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCC AGCTCTGTCTCCTGGGTTCATGCCATTCTCCTGCCTCAGCC Direct Loss 0.955230822851343 0 0.26455516 0 prediction 0.910461645702686 Functional Loss - GTF2H3 ENSG00000111358 UTR3 Human protein_coding chr12:124146392 chr12:124146392 . . 0 21 hm5C_associated_SNPs_49065 0 0 1 0 0 Cytosol 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4385 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4386 chr19 48345763 48345763 1 + C T rs146417527 48345763 + 48345743 48345783 41 GCAGGAGAATTGCTGGAACCCGGGAGGCGGAGGTTGAAGAG GCAGGAGAATTGCTGGAACCTGGGAGGCGGAGGTTGAAGAG Direct Loss 0.955226157439301 0 0.91371894 0 prediction 0.910452314878601 Functional Loss - CRX ENSG00000105392 UTR3 Human protein_coding chr19:48345763 chr19:48345763 . . 0 21 hm5C_associated_SNPs_49066 3 0 0 0 0 Nucleus 0.500231643921092 0 0.82743788 0.000463287842184856 hm5C_site_4386 DeepMRMD:0.82743788;iRNA_m5C:0.000463287842184856 Leber congenital amaurosis Leber congenital amaurosis 4387 chr19 12781095 12781095 1 + C T UCEC 12781095 + 12781075 12781115 41 GCGCAAATTCCGGGGCCACGCAGGGGTGAGTGAAAGCCTGG GCGCAAATTCCGGGGCCACGTAGGGGTGAGTGAAAGCCTGG Direct Loss 0.955223987808624 0 0.9361658 0 prediction 0.910447975617249 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12781095 chr19:12781095 nonsynonymous SNV 0.987 0 21 hm5C_associated_SNPs_49067 0 0 1 0 1 chromatin 0.500231643921096 0 0.8723316 0.000463287842192406 hm5C_site_4387 DeepMRMD:0.8723316;iRNA_m5C:0.000463287842192406 4388 chr3 195954608 195954608 1 + C T BLCA 195954608 + 195954588 195954628 41 GGTGGAAATGACCATCACCTCGTGAGTGCCCTGCCTCGCCC GGTGGAAATGACCATCACCTTGTGAGTGCCCTGCCTCGCCC Direct Loss 0.955221716027233 0 0.91856563 0 prediction 0.910443432054466 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195954608 chr3:195954608 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_49068 0 0 0 0 2 exosome 0.500232934143621 0 0.83713126 0.000465868287242932 hm5C_site_4388 DeepMRMD:0.83713126;iRNA_m5C:0.000465868287242932 4389 chr13 49281660 49281660 1 + C T rs61735175 49281660 + 49281640 49281680 41 AAAAGTGGAGGTCCCAGAATCGGGGCTGCGGGTTTCTCACA AAAAGTGGAGGTCCCAGAATTGGGGCTGCGGGTTTCTCACA Direct Loss 0.95521347525605 0 0.9511231 0 prediction 0.910426950512099 Functional Loss - CYSLTR2 ENSG00000152207 CDS Human protein_coding chr13:49281660 chr13:49281660 nonsynonymous SNV 0.095 0 21 hm5C_associated_SNPs_49069 0 0 0 0 0 exosome 0.500231643921092 0 0.9022462 0.000463287842184856 hm5C_site_4389 DeepMRMD:0.9022462;iRNA_m5C:0.000463287842184856 4390 chr5 6739866 6739866 1 + C T UCEC 6739866 + 6739846 6739886 41 GACATAGACCTGGTGGTCTTCGGGAAATGGGAGCGTCCTCC GACATAGACCTGGTGGTCTTTGGGAAATGGGAGCGTCCTCC Direct Loss 0.955200510094158 0 0.89711154 0 prediction 0.910401020188315 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6739866 chr5:6739866 synonymous SNV . 0 21 hm5C_associated_SNPs_49070 0 0 1 0 2 Nucleus 0.500231643921092 0 0.79422308 0.000463287842184856 hm5C_site_4390 DeepMRMD:0.79422308;iRNA_m5C:0.000463287842184856 4391 chr1 158325754 158325754 1 + C T CESC 158325754 + 158325734 158325774 41 AGCAGGAGCAGCGGGGCACTCAGCGAGGGGACGTCCTGCCT AGCAGGAGCAGCGGGGCACTTAGCGAGGGGACGTCCTGCCT Direct Loss 0.955183787653089 0 0.8839894 0 prediction 0.910367575306177 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325754 chr1:158325754 stopgain 0.561 0 21 hm5C_associated_SNPs_49071 0 0 0 0 1 exosome 0.500231624458516 0 0.7679788 0.000463248917032644 hm5C_site_4391 DeepMRMD:0.7679788;iRNA_m5C:0.000463248917032644 4392 chr16 20803630 20803630 1 + C T UCEC 20803630 + 20803610 20803650 41 GTTGCAGAGTCAGCTGTTGTCAGCAGCCCAGACCCCATCAG GTTGCAGAGTCAGCTGTTGTTAGCAGCCCAGACCCCATCAG Direct Loss 0.955177762437103 0 0.88599944 0 prediction 0.910355524874206 Functional Loss - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20803630 chr16:20803630 synonymous SNV . 0 21 hm5C_associated_SNPs_49072 0 0 1 0 2 Endoplasmic reticulum 0.500229791842348 0 0.77199888 0.000459583684696341 hm5C_site_4392 DeepMRMD:0.77199888;iRNA_m5C:0.000459583684696341 4393 chr12 56625219 56625219 1 + C A BRCA 56625219 + 56625199 56625239 41 CGGCGAGAATGGGACGCTGACTGCAGGGGGCTTGGCGCGGC CGGCGAGAATGGGACGCTGAATGCAGGGGGCTTGGCGCGGC Direct Loss 0.955177417079127 0 0.82016516 0 prediction 0.910354834158255 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625219 chr12:56625219 nonsynonymous SNV 0.995 2 21 hm5C_associated_SNPs_49073 0 0 1 0 0 cytosol 0.50023164388945 0 0.64033032 0.00046328777890059 hm5C_site_4393 DeepMRMD:0.64033032;iRNA_m5C:0.00046328777890059 4394 chr2 171573184 171573184 1 + C T STAD 171573184 + 171573164 171573204 41 CGCGGCGCAGGCCGCGCTGCCGCCAGGCTACTCCAACCTGC CGCGGCGCAGGCCGCGCTGCTGCCAGGCTACTCCAACCTGC Direct Loss 0.955167703320621 0 0.28748697 0 prediction 0.910335406641241 Functional Loss - SP5 ENSG00000204335 CDS Human protein_coding chr2:171573184 chr2:171573184 nonsynonymous SNV 0.145 1 21 hm5C_associated_SNPs_49074 0 0 0 0 0 insoluble cytoplasm 0.500231646474338 0 0 0.000463292948675642 hm5C_site_4394 DeepMRMD:0;iRNA_m5C:0.000463292948675642 4395 chr1 151536461 151536461 1 + C T SKCM 151536461 + 151536441 151536481 41 AGAGTGAGGTCCAGTACATCCAGGAGGTGGGCACCCCTTAC AGAGTGAGGTCCAGTACATCTAGGAGGTGGGCACCCCTTAC Direct Loss 0.955166921385963 0 0.8811412 0 prediction 0.910333842771927 Functional Loss - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151536461 chr1:151536461 stopgain 0.999 1 21 hm5C_associated_SNPs_49075 0 0 1 0 2 Ribosome 0.500231644569094 0 0.7622824 0.000463289138187939 hm5C_site_4395 DeepMRMD:0.7622824;iRNA_m5C:0.000463289138187939 4396 chr1 156144970 156144970 1 + C T LAML 156144970 + 156144950 156144990 41 GTGTGGACTGTGTCCTTGCCCGGGACCCCCACTGTGCCTGG GTGTGGACTGTGTCCTTGCCTGGGACCCCCACTGTGCCTGG Direct Loss 0.955158963369592 0 0.86498845 0 prediction 0.910317926739185 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156144970 chr1:156144970 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_49076 1 0 0 0 1 exosome 0.500231643921092 0 0.7299769 0.000463287842184856 hm5C_site_4396 DeepMRMD:0.7299769;iRNA_m5C:0.000463287842184856 not provided not provided 4397 chr19 33464178 33464178 1 + C T COAD 33464178 + 33464158 33464198 41 TTGTGGCCAATGAGAAATGGCGCGGGTCACAGCTGGCGCAG TTGTGGCCAATGAGAAATGGTGCGGGTCACAGCTGGCGCAG Direct Loss 0.955141194791771 0 0.86334044 0 prediction 0.910282389583541 Functional Loss - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33464178 chr19:33464178 nonsynonymous SNV 0.909 2 21 hm5C_associated_SNPs_49077 0 0 0 0 2 cytosol 0.500231643921207 0 0.72668088 0.00046328784241334 hm5C_site_4397 DeepMRMD:0.72668088;iRNA_m5C:0.00046328784241334 4398 chr19 5455862 5455862 1 + C T SKCM 5455862 + 5455842 5455882 41 GCGGATCTGCCGGCGCTGTTCGGCGTCCCCCTGGCCCCCGA GCGGATCTGCCGGCGCTGTTTGGCGTCCCCCTGGCCCCCGA Direct Loss 0.955133051538416 0 0.9160121 0 prediction 0.910266103076832 Functional Loss - ZNRF4 ENSG00000105428 CDS Human protein_coding chr19:5455862 chr19:5455862 synonymous SNV . 0 21 hm5C_associated_SNPs_49078 0 0 0 0 0 unknown 0.500231643912058 0 0.8320242 0.000463287824115755 hm5C_site_4398 DeepMRMD:0.8320242;iRNA_m5C:0.000463287824115755 4399 chr12 56554431 56554431 1 + C T UCEC 56554431 + 56554411 56554451 41 GTTTGTGAGGCATATCCTGTCGGGGTGACGGGCCCATGGGG GTTTGTGAGGCATATCCTGTTGGGGTGACGGGCCCATGGGG Direct Loss 0.955118143376996 0 0.9440298 0 prediction 0.910236286753992 Functional Loss - MYL6 ENSG00000092841 CDS Human protein_coding chr12:56554431 chr12:56554431 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_49079 0 0 1 0 2 Ribosome 0.500231640762378 0 0.8880596 0.000463281524756942 hm5C_site_4399 DeepMRMD:0.8880596;iRNA_m5C:0.000463281524756942 4400 chr19 49261307 49261307 1 + C T UCEC 49261307 + 49261287 49261327 41 CAGGGAACAAGTCCCCACACCGGGACCCTGCACCCCGAGGA CAGGGAACAAGTCCCCACACTGGGACCCTGCACCCCGAGGA Direct Loss 0.955111969402354 0 0.86718345 0 prediction 0.910223938804707 Functional Loss - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49261307 chr19:49261307 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_49080 0 0 0 0 0 unknown 0.500231643849583 0 0.7343669 0.000463287699165704 hm5C_site_4400 DeepMRMD:0.7343669;iRNA_m5C:0.000463287699165704 4401 chr8 145150838 145150838 1 + C G LUAD 145150838 + 145150818 145150858 41 GTGCGGGGCTGGCCATGGCTCTGCATTCGGCTGTGAGTGCC GTGCGGGGCTGGCCATGGCTGTGCATTCGGCTGTGAGTGCC Direct Loss 0.955105599395956 0 0.36680928 0 prediction 0.910211198791912 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150838 chr8:145150838 nonsynonymous SNV 0.868 1 21 hm5C_associated_SNPs_49081 0 0 1 0 1 Ribosome 0.500232067800144 0 0 0.000464135600288573 hm5C_site_4401 DeepMRMD:0;iRNA_m5C:0.000464135600288573 4402 chr1 164761845 164761845 1 + C T UCEC 164761845 + 164761825 164761865 41 TGAGAAGGGCGGAGGGTCGGCGGCAGCGGCGGCAGCGGCGG TGAGAAGGGCGGAGGGTCGGTGGCAGCGGCGGCAGCGGCGG Direct Loss 0.955100032305085 0 0.90680313 0 prediction 0.91020006461017 Functional Loss - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164761845 chr1:164761845 nonsynonymous SNV 0.032 4 21 hm5C_associated_SNPs_49082 0 0 0 0 0 Ribosome 0.500231643921092 0 0.81360626 0.000463287842184856 hm5C_site_4402 DeepMRMD:0.81360626;iRNA_m5C:0.000463287842184856 4403 chr6 126080424 126080424 1 + C T COAD 126080424 + 126080404 126080444 41 TCAGCACTTGCGCCACCCAGCGGGAGGCGGCGGCCATGACA TCAGCACTTGCGCCACCCAGTGGGAGGCGGCGGCCATGACA Direct Loss 0.955097965228099 0 0.93546474 0 prediction 0.910195930456198 Functional Loss - HEY2 ENSG00000135547 CDS Human protein_coding chr6:126080424 chr6:126080424 nonsynonymous SNV 0.963 3 21 hm5C_associated_SNPs_49083 0 0 1 0 0 exosome 0.50023164392107 0 0.87092948 0.000463287842140669 hm5C_site_4403 DeepMRMD:0.87092948;iRNA_m5C:0.000463287842140669 4404 chr2 231742802 231742802 1 + C T UCEC 231742802 + 231742782 231742822 41 GTGGTGGAGACGCTCATCTGCGGGGTGGTGTGAGGCCCTCC GTGGTGGAGACGCTCATCTGTGGGGTGGTGTGAGGCCCTCC Direct Loss 0.955096837382498 0 0.9238541 0 prediction 0.910193674764995 Functional Loss - ITM2C ENSG00000135916 CDS Human protein_coding chr2:231742802 chr2:231742802 synonymous SNV . 0 21 hm5C_associated_SNPs_49084 0 0 1 0 1 Ribosome 0.500231510206097 0 0.8477082 0.000463020412194037 hm5C_site_4404 DeepMRMD:0.8477082;iRNA_m5C:0.000463020412194037 4405 chr1 101004982 101004982 1 + C T BLCA 101004982 + 101004962 101005002 41 CCACCTACCAGGCGCTGTACCAGAGGCGCCACACGGCGGGC CCACCTACCAGGCGCTGTACTAGAGGCGCCACACGGCGGGC Direct Loss 0.955090828649532 0 0.94416225 0 prediction 0.910181657299064 Functional Loss - GPR88 ENSG00000181656 CDS Human protein_coding chr1:101004982 chr1:101004982 stopgain 0.993 0 21 hm5C_associated_SNPs_49085 0 0 0 0 0 exosome 0.500221750565791 0 0.8883245 0.000443501131581758 hm5C_site_4405 DeepMRMD:0.8883245;iRNA_m5C:0.000443501131581758 4406 chr4 128651778 128651778 1 + C T UCEC 128651778 + 128651758 128651798 41 TTCGGGAAGGACCTTCTGGCCGGCGGAGTCGCGGCAGCTGT TTCGGGAAGGACCTTCTGGCTGGCGGAGTCGCGGCAGCTGT Direct Loss 0.955086222774046 0 0.72586936 0 prediction 0.910172445548091 Functional Loss - SLC25A31 ENSG00000151475 CDS Human protein_coding chr4:128651778 chr4:128651778 synonymous SNV . 0 21 hm5C_associated_SNPs_49086 0 0 0 0 0 unknown 0.500231643921093 0 0.45173872 0.000463287842185078 hm5C_site_4406 DeepMRMD:0.45173872;iRNA_m5C:0.000463287842185078 4407 chr2 17998175 17998175 1 + C T COAD 17998175 + 17998155 17998195 41 CAGCGGAGGCGGAAAGCCAGCGAGAGGGAGAAGCTCAGGAT CAGCGGAGGCGGAAAGCCAGTGAGAGGGAGAAGCTCAGGAT Direct Loss 0.955085748859002 0 0.91981244 0 prediction 0.910171497718004 Functional Loss - MSGN1 ENSG00000151379 CDS Human protein_coding chr2:17998175 chr2:17998175 synonymous SNV . 0 21 hm5C_associated_SNPs_49087 0 0 0 0 0 exosome 0.500231643921092 0 0.83962488 0.000463287842184856 hm5C_site_4407 DeepMRMD:0.83962488;iRNA_m5C:0.000463287842184856 4408 chr1 228336416 228336416 1 + C T rs182734829 228336416 + 228336396 228336436 41 TGAGGCTTGCTGTCTGTTCTCGGCACCCCGGGCCCATACAG TGAGGCTTGCTGTCTGTTCTTGGCACCCCGGGCCCATACAG Direct Loss 0.955084724926761 0 0.9071627 0 prediction 0.910169449853522 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228336416 chr1:228336416 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49088 0 0 1 0 1 Endoplasmic reticulum 0.500231643921093 0 0.8143254 0.0004632878421853 hm5C_site_4408 DeepMRMD:0.8143254;iRNA_m5C:0.0004632878421853 4409 chrX 79281207 79281207 1 + C A UCEC 79281207 + 79281187 79281227 41 TCACCCTGCTCGGGAGAGACCTGGATGCGGCAGATCATCAG TCACCCTGCTCGGGAGAGACATGGATGCGGCAGATCATCAG Direct Loss 0.955082048789679 0 0.70909417 0 prediction 0.910164097579357 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79281207 chrX:79281207 synonymous SNV . 0 21 hm5C_associated_SNPs_49089 0 0 0 0 1 unknown 0.500231628750743 0 0.41818834 0.000463257501486458 hm5C_site_4409 DeepMRMD:0.41818834;iRNA_m5C:0.000463257501486458 4410 chr2 231860991 231860991 1 + C T UCEC 231860991 + 231860971 231861011 41 GGTCAGAGGCCAGACGCCACCGAGACTCCACCTCCCAGCAT GGTCAGAGGCCAGACGCCACTGAGACTCCACCTCCCAGCAT Direct Loss 0.955079779111985 0 0.39102805 0 prediction 0.91015955822397 Functional Loss - SPATA3 ENSG00000173699 CDS Human protein_coding chr2:231860991 chr2:231860991 stopgain 0.002 0 21 hm5C_associated_SNPs_49090 0 0 0 0 0 unknown 0.500231645113165 0 0 0.00046329022632996 hm5C_site_4410 DeepMRMD:0;iRNA_m5C:0.00046329022632996 4411 chr22 32870769 32870769 1 + C T rs2072814 32870769 + 32870749 32870789 41 CCAGCTCTCGGGGTCGGCTCCAGGAGGCGCCCTCAGGAGAG CCAGCTCTCGGGGTCGGCTCTAGGAGGCGCCCTCAGGAGAG Direct Loss 0.955073526974166 0 0.94321644 0 prediction 0.910147053948331 Functional Loss - FBXO7 ENSG00000100225 UTR5 Human protein_coding chr22:32870769 chr22:32870769 . . 0 21 hm5C_associated_SNPs_49091 1 0 1 0 0 chromatin 0.500231643981585 0 0.88643288 0.000463287963170966 hm5C_site_4411 DeepMRMD:0.88643288;iRNA_m5C:0.000463287963170966 Parkinson Disease, Recessive Parkinson Disease, Recessive 4412 chr20 31805357 31805357 1 + C T BLCA 31805357 + 31805337 31805377 41 GACCCTATGATGTGTCCACTCTGGAGGCTCCTCATCTTCCT GACCCTATGATGTGTCCACTTTGGAGGCTCCTCATCTTCCT Direct Loss 0.955068293788857 0 0.38136238 0 prediction 0.910136587577714 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31805357 chr20:31805357 synonymous SNV . 0 21 hm5C_associated_SNPs_49092 0 0 0 0 0 unknown 0.500231643832469 0 0 0.000463287664938639 hm5C_site_4412 DeepMRMD:0;iRNA_m5C:0.000463287664938639 4413 chr17 33475325 33475325 1 + C T SARC 33475325 + 33475305 33475345 41 AGCTGAAGGAGGAAGGAAACCGGCATTTCCAGCTCCAGGAC AGCTGAAGGAGGAAGGAAACTGGCATTTCCAGCTCCAGGAC Direct Loss 0.955063721247735 0 0.5441266 0 prediction 0.91012744249547 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33475325 chr17:33475325 nonsynonymous SNV 0.976 1 21 hm5C_associated_SNPs_49093 0 0 0 0 1 Nucleus 0.500231643921094 0 0.0882532 0.000463287842187077 hm5C_site_4413 DeepMRMD:0.0882532;iRNA_m5C:0.000463287842187077 4414 chr12 27654998 27654998 1 + C T rs61734420 27654998 + 27654978 27655018 41 GCCGCACCACATGGGACCTACGGGAGATGAGAGAGCCTTTC GCCGCACCACATGGGACCTATGGGAGATGAGAGAGCCTTTC Direct Loss 0.955055321448107 0 0.6516817 0 prediction 0.910110642896215 Functional Loss - SMCO2 ENSG00000165935 CDS Human protein_coding chr12:27654998 chr12:27654998 nonsynonymous SNV 0.008 1 21 hm5C_associated_SNPs_49094 0 0 1 0 0 exosome 0.500231643921092 0 0.3033634 0.000463287842184856 hm5C_site_4414 DeepMRMD:0.3033634;iRNA_m5C:0.000463287842184856 4415 chr11 60561526 60561526 1 + C A LUSC 60561526 + 60561506 60561546 41 TCATCTCCAAGGATCTCTTTCTGGAGAGCCCATTTGAGTCC TCATCTCCAAGGATCTCTTTATGGAGAGCCCATTTGAGTCC Direct Loss 0.955049149879414 0 0.19212204 0 prediction 0.910098299758827 Functional Loss - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60561526 chr11:60561526 nonsynonymous SNV 0.978 2 21 hm5C_associated_SNPs_49095 0 0 0 0 2 Nucleus 0.500231650418127 0 0 0.000463300836253122 hm5C_site_4415 DeepMRMD:0;iRNA_m5C:0.000463300836253122 4416 chr17 27064895 27064895 1 + C A STAD 27064895 + 27064875 27064915 41 CCACTGTCGTCAGTGTATGCCTGGGGTGGTGGGCTGGGCAC CCACTGTCGTCAGTGTATGCATGGGGTGGTGGGCTGGGCAC Direct Loss 0.955048655541022 0 0.7608298 0 prediction 0.910097311082044 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064895 chr17:27064895 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49096 0 0 1 0 1 Nucleus 0.500231642054003 0 0.5216596 0.000463284108006112 hm5C_site_4416 DeepMRMD:0.5216596;iRNA_m5C:0.000463284108006112 4417 chr1 8030993 8030993 1 + C T UCEC 8030993 + 8030973 8031013 41 TACTGAAGGAGCAGGAAAACCGGAAGGGCCTGATAGCCGCC TACTGAAGGAGCAGGAAAACTGGAAGGGCCTGATAGCCGCC Direct Loss 0.955046473476421 0 0.7869038 0 prediction 0.910092946952843 Functional Loss - PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030993 chr1:8030993 nonsynonymous SNV 0.093 3 21 hm5C_associated_SNPs_49097 0 0 1 0 2 Ribosome 0.500231643908243 0 0.5738076 0.000463287816486746 hm5C_site_4417 DeepMRMD:0.5738076;iRNA_m5C:0.000463287816486746 4418 chr16 5047036 5047036 1 + C A OV 5047036 + 5047016 5047056 41 ATGCAGGGGGCTGGCATTACCAGGACATAGGTGCGTGCCTC ATGCAGGGGGCTGGCATTACAAGGACATAGGTGCGTGCCTC Direct Loss 0.95503599219616 0 0.9415797 0 prediction 0.91007198439232 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5047036 chr16:5047036 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_49098 0 0 0 0 1 exosome 0.500231647505338 0 0.8831594 0.000463295010675546 hm5C_site_4418 DeepMRMD:0.8831594;iRNA_m5C:0.000463295010675546 4419 chr17 4857058 4857058 1 + C T LGG 4857058 + 4857038 4857078 41 GTCCTTGGCCGTGTGTAAGGCGGGAGCAGCTGAGAAGGGGG GTCCTTGGCCGTGTGTAAGGTGGGAGCAGCTGAGAAGGGGG Direct Loss 0.955033156479508 0 0.89553136 0 prediction 0.910066312959017 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4857058 chr17:4857058 nonsynonymous SNV 0.975 1 21 hm5C_associated_SNPs_49099 0 0 1 0 1 nucleus 0.500231673933223 0 0.79106272 0.000463347866446195 hm5C_site_4419 DeepMRMD:0.79106272;iRNA_m5C:0.000463347866446195 4420 chr1 248570338 248570338 1 + C T UCEC 248570338 + 248570318 248570358 41 CCTTAGAAACAAGGATGTGACTGGAGCTCTGAAGAGGGCCT CCTTAGAAACAAGGATGTGATTGGAGCTCTGAAGAGGGCCT Direct Loss 0.95503277312583 0 0.4267445 0 prediction 0.91006554625166 Functional Loss - OR2T1 ENSG00000175143 CDS Human protein_coding chr1:248570338 chr1:248570338 nonsynonymous SNV 0.353 0 21 hm5C_associated_SNPs_49100 0 0 0 0 0 unknown 0.500227809566528 0 0 0.000455619133056695 hm5C_site_4420 DeepMRMD:0;iRNA_m5C:0.000455619133056695 4421 chr15 40987350 40987350 1 + C T rs541126881 40987350 + 40987330 40987370 41 ACGTCGACGCGGGCGTGACCCTGGGCGAGAGGGTTTGGCGG ACGTCGACGCGGGCGTGACCTTGGGCGAGAGGGTTTGGCGG Direct Loss 0.955029502738813 0 0.8965132 0 prediction 0.910059005477627 Functional Loss - RAD51 ENSG00000051180 UTR5 Human protein_coding chr15:40987350 chr15:40987350 . . 0 21 hm5C_associated_SNPs_49101 0 0 0 0 0 Cytosol 0.500231643921093 0 0.7930264 0.000463287842185522 hm5C_site_4421 DeepMRMD:0.7930264;iRNA_m5C:0.000463287842185522 4422 chr17 72759559 72759559 1 + C T LUAD 72759559 + 72759539 72759579 41 GGGGACGTGGTGTCCGCCATCAGGGCTGGCGGGGACGAGAC GGGGACGTGGTGTCCGCCATTAGGGCTGGCGGGGACGAGAC Direct Loss 0.955028572926615 0 0.9138777 0 prediction 0.910057145853229 Functional Loss - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72759559 chr17:72759559 synonymous SNV . 0 21 hm5C_associated_SNPs_49102 0 0 1 0 1 Ribosome 0.500231643920083 0 0.8277554 0.000463287840165583 hm5C_site_4422 DeepMRMD:0.8277554;iRNA_m5C:0.000463287840165583 4423 chr2 219110212 219110212 1 + C G BLCA 219110212 + 219110192 219110232 41 TTAGCCACAGGGAACCTCCTCTGGAGCTGAAAGACACAGAC TTAGCCACAGGGAACCTCCTGTGGAGCTGAAAGACACAGAC Direct Loss 0.955009749465162 0 0.27741283 0 prediction 0.910019498930323 Functional Loss - ARPC2 ENSG00000163466 CDS Human protein_coding chr2:219110212 chr2:219110212 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49103 0 0 1 0 2 Cytosol 0.500231643921085 0 0 0.000463287842169535 hm5C_site_4423 DeepMRMD:0;iRNA_m5C:0.000463287842169535 4424 chr5 135188504 135188504 1 + C T UCEC 135188504 + 135188484 135188524 41 AGATGCAGACACAACCGTTTCGGGACGGTAAGAGGCCAGGG AGATGCAGACACAACCGTTTTGGGACGGTAAGAGGCCAGGG Direct Loss 0.955001271054881 0 0.907148 0 prediction 0.910002542109762 Functional Loss - SLC25A48 ENSG00000145832 CDS Human protein_coding chr5:135188504 chr5:135188504 nonsynonymous SNV 0.916 1 21 hm5C_associated_SNPs_49104 0 0 0 0 1 Cytosol 0.500231643921092 0 0.814296 0.000463287842183746 hm5C_site_4424 DeepMRMD:0.814296;iRNA_m5C:0.000463287842183746 4425 chr1 152648708 152648708 1 + C G ESCA 152648708 + 152648688 152648728 41 CTGGGGCTGGTGGCTGCTCCCTGAGCCACCACAGGCCCCGT CTGGGGCTGGTGGCTGCTCCGTGAGCCACCACAGGCCCCGT Direct Loss 0.954992161332289 0 0.15288094 0 prediction 0.909984322664578 Functional Loss - LCE2C ENSG00000187180 CDS Human protein_coding chr1:152648708 chr1:152648708 nonsynonymous SNV 0.974 0 21 hm5C_associated_SNPs_49105 0 0 0 0 0 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4425 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4426 chr5 14713064 14713064 1 + C T LIHC 14713064 + 14713044 14713084 41 GCCAGGAGGGAGCCCACGCCCAGGGTCGCACCGTGCACCCT GCCAGGAGGGAGCCCACGCCTAGGGTCGCACCGTGCACCCT Direct Loss 0.954966138114899 0 0.9206176 0 prediction 0.909932276229798 Functional Loss - ANKH ENSG00000154122 CDS Human protein_coding chr5:14713064 chr5:14713064 synonymous SNV . 0 21 hm5C_associated_SNPs_49106 0 0 0 0 0 Cytosol 0.500231643921092 0 0.8412352 0.000463287842184856 hm5C_site_4426 DeepMRMD:0.8412352;iRNA_m5C:0.000463287842184856 4427 chr7 54612434 54612434 1 + C T BLCA 54612434 + 54612414 54612454 41 AGATCCAATGGTGGTTCCTGCGGGGGCCGGAGGACCTGGAT AGATCCAATGGTGGTTCCTGTGGGGGCCGGAGGACCTGGAT Direct Loss 0.954959502627636 0 0.93136704 0 prediction 0.909919005255271 Functional Loss - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54612434 chr7:54612434 nonsynonymous SNV 0.393 3 21 hm5C_associated_SNPs_49107 0 0 0 0 1 exosome 0.500231643921298 0 0.86273408 0.000463287842595195 hm5C_site_4427 DeepMRMD:0.86273408;iRNA_m5C:0.000463287842595195 4428 chr12 112460165 112460165 1 + C T rs140081978 112460165 + 112460145 112460185 41 CCTGTATACGACGCCCTGGCCGGGGAGTTCATCAGGGCCTC CCTGTATACGACGCCCTGGCTGGGGAGTTCATCAGGGCCTC Direct Loss 0.954958823354343 0 0.91717577 0 prediction 0.909917646708686 Functional Loss - ERP29 ENSG00000089248 CDS Human protein_coding chr12:112460165 chr12:112460165 synonymous SNV . 0 21 hm5C_associated_SNPs_49108 0 0 1 0 0 Ribosome 0.500231643921092 0 0.83435154 0.000463287842184856 hm5C_site_4428 DeepMRMD:0.83435154;iRNA_m5C:0.000463287842184856 4429 chr19 41726666 41726666 1 + C T SKCM 41726666 + 41726646 41726686 41 CCCCCGAGGTACATTGGCTTCGGGATGGACAGATCCTGGAG CCCCCGAGGTACATTGGCTTTGGGATGGACAGATCCTGGAG Direct Loss 0.954948795447306 0 0.91285646 0 prediction 0.909897590894611 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41726666 chr19:41726666 nonsynonymous SNV 0.513 3 21 hm5C_associated_SNPs_49109 0 0 0 0 1 Nucleus 0.50023164392108 0 0.82571292 0.000463287842160431 hm5C_site_4429 DeepMRMD:0.82571292;iRNA_m5C:0.000463287842160431 4430 chr7 19184661 19184661 1 + G A BRCA 19184661 - 19184641 19184681 41 AGCGCCAGGCCGCCAACATCCGCGAAAGGAAGCGGATGTTC AGCGCCAGGCCGCCAACATCTGCGAAAGGAAGCGGATGTTC Direct Loss 0.954911199726147 0 0.8065063 0 prediction 0.909822399452295 Functional Loss - FERD3L ENSG00000146618 CDS Human protein_coding chr7:19184661 chr7:19184661 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49110 0 0 0 0 0 unknown 0.500231643921092 0 0.6130126 0.000463287842184412 hm5C_site_4430 DeepMRMD:0.6130126;iRNA_m5C:0.000463287842184412 4431 chr6 2766123 2766123 1 + C T rs534747373 2766123 + 2766103 2766143 41 CCAGCCACCCCGACGGCAGCCGAGAGCAGCGAGGGCGAGGG CCAGCCACCCCGACGGCAGCTGAGAGCAGCGAGGGCGAGGG Direct Loss 0.954904963743777 0 0.7100922 0 prediction 0.909809927487555 Functional Loss - WRNIP1 ENSG00000124535 CDS Human protein_coding chr6:2766123 chr6:2766123 synonymous SNV . 0 21 hm5C_associated_SNPs_49111 0 0 0 0 0 Ribosome 0.500231643916456 0 0.4201844 0.000463287832911163 hm5C_site_4431 DeepMRMD:0.4201844;iRNA_m5C:0.000463287832911163 4432 chr16 57741439 57741439 1 + C G LUAD 57741439 + 57741419 57741459 41 CTCCTGGGTCCTTGTGCTATCGGGGAAGCGCGAGGTGCCTG CTCCTGGGTCCTTGTGCTATGGGGGAAGCGCGAGGTGCCTG Direct Loss 0.954887373112753 0 0.93809175 0 prediction 0.909774746225505 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57741439 chr16:57741439 nonsynonymous SNV 0.238 3 21 hm5C_associated_SNPs_49112 0 0 0 0 1 cytosol 0.500231643921049 0 0.8761835 0.000463287842097815 hm5C_site_4432 DeepMRMD:0.8761835;iRNA_m5C:0.000463287842097815 4433 chr17 41142894 41142894 1 + C T HNSC 41142894 + 41142874 41142914 41 CAGAGGATGTGAAGAAAGTCCGGGAGACGGGGCTGCACCTG CAGAGGATGTGAAGAAAGTCTGGGAGACGGGGCTGCACCTG Direct Loss 0.954882986922784 0 0.9077599 0 prediction 0.909765973845567 Functional Loss - RUNDC1 ENSG00000198863 CDS Human protein_coding chr17:41142894 chr17:41142894 nonsynonymous SNV 0.924 2 21 hm5C_associated_SNPs_49113 0 0 0 0 1 exosome 0.500231643921306 0 0.8155198 0.000463287842612736 hm5C_site_4433 DeepMRMD:0.8155198;iRNA_m5C:0.000463287842612736 4434 chr1 158815411 158815411 1 + C T UCEC 158815411 + 158815391 158815431 41 GGCCCAACGGCAGGTGGATGCAAGAAGAAATGTTCCCCAAA GGCCCAACGGCAGGTGGATGTAAGAAGAAATGTTCCCCAAA Direct Loss 0.95487304823547 0 0.9004765 0 prediction 0.90974609647094 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158815411 chr1:158815411 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49114 0 0 0 0 1 exosome 0.50023172753335 0 0.800953 0.00046345506669998 hm5C_site_4434 DeepMRMD:0.800953;iRNA_m5C:0.00046345506669998 4435 chr19 17531136 17531136 1 + C G BLCA 17531136 + 17531116 17531156 41 CGGTAGATCTCCTGCACCGTCGAGGGGGCACCCGCCAGCTT CGGTAGATCTCCTGCACCGTGGAGGGGGCACCCGCCAGCTT Direct Loss 0.954862596318485 0 0.9239116 0 prediction 0.90972519263697 Functional Loss - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17531136 chr19:17531136 synonymous SNV . 0 21 hm5C_associated_SNPs_49115 0 0 1 0 2 Ribosome 0.50023164397551 0 0.8478232 0.000463287951019353 hm5C_site_4435 DeepMRMD:0.8478232;iRNA_m5C:0.000463287951019353 4436 chrX 37028467 37028467 1 + C A LUAD 37028467 + 37028447 37028487 41 GCCCAGAGCCTCCCAAGACTCGGGTGTCCAGTCTCCCCCCG GCCCAGAGCCTCCCAAGACTAGGGTGTCCAGTCTCCCCCCG Direct Loss 0.954856109378341 0 0.9238143 0 prediction 0.909712218756682 Functional Loss - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37028467 chrX:37028467 synonymous SNV . 0 21 hm5C_associated_SNPs_49116 0 0 0 0 0 unknown 0.500231643921092 0 0.8476286 0.000463287842184856 hm5C_site_4436 DeepMRMD:0.8476286;iRNA_m5C:0.000463287842184856 4437 chrX 68749788 68749788 1 + C T HNSC 68749788 + 68749768 68749808 41 CCCTAGAGGAGGGCCTGACACGGGAAGAGTGACAGTAGGGA CCCTAGAGGAGGGCCTGACATGGGAAGAGTGACAGTAGGGA Direct Loss 0.95485230877096 0 0.85608447 0 prediction 0.909704617541921 Functional Loss - FAM155B ENSG00000130054 CDS Human protein_coding chrX:68749788 chrX:68749788 nonsynonymous SNV 0.990 1 21 hm5C_associated_SNPs_49117 0 0 0 0 0 exosome 0.500231643921092 0 0.71216894 0.000463287842184856 hm5C_site_4437 DeepMRMD:0.71216894;iRNA_m5C:0.000463287842184856 4438 chr18 29049253 29049253 1 + C T SKCM 29049253 + 29049233 29049273 41 CAGGTATGGCAGGCCGCACTCAGGGAGGCTGGGGCCTGCCG CAGGTATGGCAGGCCGCACTTAGGGAGGCTGGGGCCTGCCG Direct Loss 0.954850164639393 0 0.94856286 0 prediction 0.909700329278786 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29049253 chr18:29049253 nonsynonymous SNV 0.034 0 21 hm5C_associated_SNPs_49118 0 0 0 0 1 Nucleus 0.500231643921092 0 0.89712572 0.000463287842184856 hm5C_site_4438 DeepMRMD:0.89712572;iRNA_m5C:0.000463287842184856 4439 chr3 136708404 136708404 1 + C T UCEC 136708404 + 136708384 136708424 41 TGGAGGAGGGAGCCTGGTGCCGAGGTGAGACTCCAGCCTTG TGGAGGAGGGAGCCTGGTGCTGAGGTGAGACTCCAGCCTTG Direct Loss 0.954835899022723 0 0.9230541 0 prediction 0.909671798045445 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136708404 chr3:136708404 synonymous SNV . 0 21 hm5C_associated_SNPs_49119 0 0 0 1 1 nucleoplasm 0.500231594929308 0 0.8461082 0.000463189858615598 hm5C_site_4439 DeepMRMD:0.8461082;iRNA_m5C:0.000463189858615598 4440 chr8 66992750 66992750 1 + C T GBM 66992750 + 66992730 66992770 41 TCTATGTGTCCCCAGAGGATCTGGAGGAGCAGATCAAGTCT TCTATGTGTCCCCAGAGGATTTGGAGGAGCAGATCAAGTCT Direct Loss 0.954832282173903 0 0.8050928 0 prediction 0.909664564347805 Functional Loss - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66992750 chr8:66992750 synonymous SNV . 0 21 hm5C_associated_SNPs_49120 0 0 0 0 1 exosome 0.500231643920075 0 0.6101856 0.000463287840150262 hm5C_site_4440 DeepMRMD:0.6101856;iRNA_m5C:0.000463287840150262 4441 chr7 23221584 23221584 1 + C G rs148267472 23221584 + 23221564 23221604 41 CGGAAAAAGGCCTTCCCAGGCGCGAGAAGATGACGTCACAG CGGAAAAAGGCCTTCCCAGGGGCGAGAAGATGACGTCACAG Direct Loss 0.954805465885825 0 0.33214003 0 prediction 0.909610931771651 Functional Loss - NUPL2 ENSG00000136243 UTR5 Human protein_coding chr7:23221584 chr7:23221584 . . 0 21 hm5C_associated_SNPs_49121 0 0 0 0 0 Cytosol 0.500231479483099 0 0 0.000462958966198412 hm5C_site_4441 DeepMRMD:0;iRNA_m5C:0.000462958966198412 4442 chr8 65494196 65494196 1 + C T COAD 65494196 + 65494176 65494216 41 GTGCGAAAGCTCTCCAAGATCGCCACGCTGCTGCTCGCCAA GTGCGAAAGCTCTCCAAGATTGCCACGCTGCTGCTCGCCAA Direct Loss 0.954801958406739 0 0.80321014 0 prediction 0.909603916813478 Functional Loss - BHLHE22 ENSG00000180828 CDS Human protein_coding chr8:65494196 chr8:65494196 synonymous SNV . 0 21 hm5C_associated_SNPs_49122 0 0 0 0 0 exosome 0.500231643744964 0 0.60642028 0.000463287489927744 hm5C_site_4442 DeepMRMD:0.60642028;iRNA_m5C:0.000463287489927744 4443 chr1 71512493 71512493 1 + C T ACC 71512493 + 71512473 71512513 41 TTGGCCCGGCAGCGGGACACCAGGGCCTTAATGGTGGCCAG TTGGCCCGGCAGCGGGACACTAGGGCCTTAATGGTGGCCAG Direct Loss 0.954801205817666 0 0.90473384 0 prediction 0.909602411635333 Functional Loss - PTGER3 ENSG00000050628 CDS Human protein_coding chr1:71512493 chr1:71512493 synonymous SNV . 0 21 hm5C_associated_SNPs_49123 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.80946768 0.000463287842184856 hm5C_site_4443 DeepMRMD:0.80946768;iRNA_m5C:0.000463287842184856 4444 chr19 51631240 51631240 1 + C T LUSC 51631240 + 51631220 51631260 41 GGAGTGACTCAGGGGGTGGTCGGGGGAGCTGGAGCCACAGC GGAGTGACTCAGGGGGTGGTTGGGGGAGCTGGAGCCACAGC Direct Loss 0.954798464121636 0 0.95642686 0 prediction 0.909596928243271 Functional Loss - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51631240 chr19:51631240 synonymous SNV . 0 21 hm5C_associated_SNPs_49124 0 0 0 0 2 exosome 0.500231643609649 0 0.91285372 0.000463287219298669 hm5C_site_4444 DeepMRMD:0.91285372;iRNA_m5C:0.000463287219298669 4445 chr9 977054 977054 1 + C A rs116052222 977054 + 977034 977074 41 GGGCGGCCCGGTGTCGCAGCCGCCACGGGCGCCCCTGCAGC GGGCGGCCCGGTGTCGCAGCAGCCACGGGCGCCCCTGCAGC Direct Loss 0.954796841831518 0 0.88626266 0 prediction 0.909593683663037 Functional Loss - DMRT3 ENSG00000064218 CDS Human protein_coding chr9:977054 chr9:977054 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_49125 0 0 0 0 0 unknown 0.500230252779736 0 0.77252532 0.000460505559471969 hm5C_site_4445 DeepMRMD:0.77252532;iRNA_m5C:0.000460505559471969 4446 chr20 55209275 55209275 1 + C T UCEC 55209275 + 55209255 55209295 41 ATTGGGTTGAATCTTCCGGCCGGGAGGCGGAAAGCCGCTCA ATTGGGTTGAATCTTCCGGCTGGGAGGCGGAAAGCCGCTCA Direct Loss 0.95479105574939 0 0.40225273 0 prediction 0.90958211149878 Functional Loss - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55209275 chr20:55209275 synonymous SNV . 0 21 hm5C_associated_SNPs_49126 0 0 1 0 2 Cytosol 0.50023166113573 0 0 0.000463322271460509 hm5C_site_4446 DeepMRMD:0;iRNA_m5C:0.000463322271460509 4447 chr18 8786015 8786015 1 + C T ESCA 8786015 + 8785995 8786035 41 GCCTGCGCCTCCGAGCCGCGCGGGAGCTGCACCGCCGCGCA GCCTGCGCCTCCGAGCCGCGTGGGAGCTGCACCGCCGCGCA Direct Loss 0.954786747404478 0 0.9299259 0 prediction 0.909573494808956 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8786015 chr18:8786015 nonsynonymous SNV 0.266 1 21 hm5C_associated_SNPs_49127 0 0 1 0 2 Nucleus 0.50023164471114 0 0.8598518 0.00046328942228091 hm5C_site_4447 DeepMRMD:0.8598518;iRNA_m5C:0.00046328942228091 4448 chr7 2565141 2565141 1 + C T BLCA 2565141 + 2565121 2565161 41 CACACGCGGGACGTCTACGTCGGCAAGCCCAGCCTGGACAG CACACGCGGGACGTCTACGTTGGCAAGCCCAGCCTGGACAG Direct Loss 0.954783364997484 0 0.87449586 0 prediction 0.909566729994968 Functional Loss - LFNG ENSG00000106003 CDS Human protein_coding chr7:2565141 chr7:2565141 synonymous SNV . 0 21 hm5C_associated_SNPs_49128 0 0 0 0 2 Ribosome 0.500231644027999 0 0.74899172 0.000463288055997602 hm5C_site_4448 DeepMRMD:0.74899172;iRNA_m5C:0.000463288055997602 4449 chr3 196388068 196388068 1 + C T HNSC 196388068 + 196388048 196388088 41 ATGTTACAGGTCCTGTCTCTCAGGAACATGGGCCTCCACTC ATGTTACAGGTCCTGTCTCTTAGGAACATGGGCCTCCACTC Direct Loss 0.954777833319316 0 0.9259888 0 prediction 0.909555666638633 Functional Loss - NRROS ENSG00000174004 CDS Human protein_coding chr3:196388068 chr3:196388068 synonymous SNV . 0 21 hm5C_associated_SNPs_49129 0 0 0 0 0 chromatin 0.500231436106114 0 0.8519776 0.000462872212228627 hm5C_site_4449 DeepMRMD:0.8519776;iRNA_m5C:0.000462872212228627 4450 chrX 34961413 34961413 1 + C A SARC 34961413 + 34961393 34961433 41 GTGCTGAAACAGCTGGATCCCGAGAGGAAGCTGGAGGACGC GTGCTGAAACAGCTGGATCCAGAGAGGAAGCTGGAGGACGC Direct Loss 0.954773715144158 0 0.92786485 0 prediction 0.909547430288315 Functional Loss - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961413 chrX:34961413 synonymous SNV . 0 21 hm5C_associated_SNPs_49130 0 0 0 0 0 unknown 0.500231643921098 0 0.8557297 0.000463287842196181 hm5C_site_4450 DeepMRMD:0.8557297;iRNA_m5C:0.000463287842196181 4451 chr14 24773726 24773726 1 + C T rs558942777 24773726 + 24773706 24773746 41 ATGTGGCTCTGGCCTGTAGTCGCCATGGCAGCCGTGTGCTA ATGTGGCTCTGGCCTGTAGTTGCCATGGCAGCCGTGTGCTA Direct Loss 0.954770762829112 0 0.8126834 0 prediction 0.909541525658224 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24773726 chr14:24773726 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49131 0 0 1 0 2 Nucleus 0.500231643921055 0 0.6253668 0.000463287842110471 hm5C_site_4451 DeepMRMD:0.6253668;iRNA_m5C:0.000463287842110471 4452 chr20 44333159 44333159 1 + C T UCEC 44333159 + 44333139 44333179 41 TGTACAATGCAGGAAGATTGCGAGAAAGGATTTCAGTGCTG TGTACAATGCAGGAAGATTGTGAGAAAGGATTTCAGTGCTG Direct Loss 0.95476813038226 0 0.8609636 0 prediction 0.90953626076452 Functional Loss - WFDC10B;WFDC13 ENSG00000168634;ENSG00000182931 CDS Human other chr20:44333159 chr20:44333159 nonsynonymous SNV 0.056 1 21 hm5C_associated_SNPs_49132 0 0 0 0 1 unknown 0.500260778047981 0 0.7219272 0.000521556095961495 hm5C_site_4452 DeepMRMD:0.7219272;iRNA_m5C:0.000521556095961495 4453 chr5 167956719 167956719 1 + C A rs111777993 167956719 + 167956699 167956739 41 CGGGGGCGCGGCGGCGGCGACGGCAAGGATCGCGGCGGCGG CGGGGGCGCGGCGGCGGCGAAGGCAAGGATCGCGGCGGCGG Direct Loss 0.954763342422781 0 0.8718153 0 prediction 0.909526684845562 Functional Loss - FBLL1 ENSG00000188573 CDS Human protein_coding chr5:167956719 chr5:167956719 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_49133 0 0 0 0 0 exosome 0.500231636187298 0 0.7436306 0.000463272374595647 hm5C_site_4453 DeepMRMD:0.7436306;iRNA_m5C:0.000463272374595647 4454 chr16 3187610 3187610 1 + C T STAD 3187610 + 3187590 3187630 41 CTGGGTGCGTGAGCAGCACCCGGGAAGCGGTGAGGAGGCTG CTGGGTGCGTGAGCAGCACCTGGGAAGCGGTGAGGAGGCTG Direct Loss 0.95475298264642 0 0.88978624 0 prediction 0.909505965292841 Functional Loss - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3187610 chr16:3187610 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_49134 0 0 0 0 1 chromatin 0.500231644012911 0 0.77957248 0.00046328802582174 hm5C_site_4454 DeepMRMD:0.77957248;iRNA_m5C:0.00046328802582174 4455 chr19 18700384 18700384 1 + C T BLCA 18700384 + 18700364 18700404 41 CCAGGCCTTCGCCGCCGCCTCGCGGGAGGTGCTGGCGGTGG CCAGGCCTTCGCCGCCGCCTTGCGGGAGGTGCTGGCGGTGG Direct Loss 0.954751919588555 0 0.60516876 0 prediction 0.90950383917711 Functional Loss - C19orf60 ENSG00000006015 CDS Human protein_coding chr19:18700384 chr19:18700384 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_49135 0 0 1 0 1 Ribosome 0.500231638375036 0 0.21033752 0.000463276750071184 hm5C_site_4455 DeepMRMD:0.21033752;iRNA_m5C:0.000463276750071184 4456 chr5 132086633 132086633 1 + C T COAD 132086633 + 132086613 132086653 41 TGAGGATGGAGCTGGCTATTCTGGACAGACTGCACTGGGAC TGAGGATGGAGCTGGCTATTTTGGACAGACTGCACTGGGAC Direct Loss 0.954747204575339 0 0.5715482 0 prediction 0.909494409150678 Functional Loss - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132086633 chr5:132086633 synonymous SNV . 0 21 hm5C_associated_SNPs_49136 0 0 0 0 2 nucleus 0.500231654582909 0 0.1430964 0.000463309165817716 hm5C_site_4456 DeepMRMD:0.1430964;iRNA_m5C:0.000463309165817716 4457 chr6 27114968 27114968 1 + C G LUAD 27114968 + 27114948 27114988 41 AGGCCAAGACCCGCTCTTCTCGGGCTGGGCTTCAGTTCCCC AGGCCAAGACCCGCTCTTCTGGGGCTGGGCTTCAGTTCCCC Direct Loss 0.954721905734316 0 0.9298307 0 prediction 0.909443811468632 Functional Loss - HIST1H2AH ENSG00000184825 CDS Human other chr6:27114968 chr6:27114968 nonsynonymous SNV 0.010 2 21 hm5C_associated_SNPs_49137 0 0 1 0 0 cytosol 0.500231643921092 0 0.8596614 0.000463287842184856 hm5C_site_4457 DeepMRMD:0.8596614;iRNA_m5C:0.000463287842184856 4458 chr1 75602868 75602868 1 + C T LUAD 75602868 + 75602848 75602888 41 TCCTCGCCCCGGTCCATGGCCTCGGGCTCCGGCTGCCCTCC TCCTCGCCCCGGTCCATGGCTTCGGGCTCCGGCTGCCCTCC Direct Loss 0.954720246657347 0 0.26653564 0 prediction 0.909440493314693 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602868 chr1:75602868 synonymous SNV . 0 21 hm5C_associated_SNPs_49138 0 0 0 0 3 exosome 0.500231643921085 0 0 0.000463287842169313 hm5C_site_4458 DeepMRMD:0;iRNA_m5C:0.000463287842169313 4459 chr5 131705668 131705668 1 + C T TGCT 131705668 + 131705648 131705688 41 GGGCCTCTGAGGGCGGCATGCGGGACTACGACGAGGTGACC GGGCCTCTGAGGGCGGCATGTGGGACTACGACGAGGTGACC Direct Loss 0.954718753209092 0 0.8919252 0 prediction 0.909437506418184 Functional Loss - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131705668 chr5:131705668 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_49139 0 0 1 0 0 chromatin 0.500231507195409 0 0.7838504 0.000463014390818195 hm5C_site_4459 DeepMRMD:0.7838504;iRNA_m5C:0.000463014390818195 4460 chr8 144680316 144680316 1 + C T BLCA 144680316 + 144680296 144680336 41 GCCAGTGTGTGCCGCGACTTCGGCGTGCCGGGCGGGACGCT GCCAGTGTGTGCCGCGACTTTGGCGTGCCGGGCGGGACGCT Direct Loss 0.954718686299224 0 0.9032726 0 prediction 0.909437372598448 Functional Loss - TIGD5 ENSG00000179886 CDS Human protein_coding chr8:144680316 chr8:144680316 synonymous SNV . 0 21 hm5C_associated_SNPs_49140 0 0 1 0 0 Ribosome 0.500231636051034 0 0.8065452 0.000463272102067647 hm5C_site_4460 DeepMRMD:0.8065452;iRNA_m5C:0.000463272102067647 4461 chr17 38240916 38240916 1 + C T UCEC 38240916 + 38240896 38240936 41 GTAAGCTGATTGAGCAGAACCGGGAGCGGCGGCGGAAGGAG GTAAGCTGATTGAGCAGAACTGGGAGCGGCGGCGGAAGGAG Direct Loss 0.954716799164554 0 0.8949206 0 prediction 0.909433598329107 Functional Loss - THRA ENSG00000126351 CDS Human protein_coding chr17:38240916 chr17:38240916 nonsynonymous SNV 0.995 5 21 hm5C_associated_SNPs_49141 0 0 1 0 1 Ribosome 0.500231643501817 0 0.7898412 0.000463287003633406 hm5C_site_4461 DeepMRMD:0.7898412;iRNA_m5C:0.000463287003633406 4462 chr17 49338121 49338121 1 + C G rs568030637 49338121 + 49338101 49338141 41 CCGGCCGAGCGCGGCGGCCGCTGCGATTGCAGTCGCGGCGG CCGGCCGAGCGCGGCGGCCGGTGCGATTGCAGTCGCGGCGG Direct Loss 0.954716341777271 0 0.76265824 0 prediction 0.909432683554542 Functional Loss - UTP18 ENSG00000011260 CDS Human protein_coding chr17:49338121 chr17:49338121 nonsynonymous SNV 0.018 0 21 hm5C_associated_SNPs_49142 0 0 1 0 0 Ribosome 0.500231909784006 0 0.52531648 0.000463819568012003 hm5C_site_4462 DeepMRMD:0.52531648;iRNA_m5C:0.000463819568012003 4463 chr8 24771433 24771433 1 + G A UCEC 24771433 - 24771413 24771453 41 GGACACGGTGCTGGGCGAGCCGCGGGACCACGACTGCGAGC GGACACGGTGCTGGGCGAGCTGCGGGACCACGACTGCGAGC Direct Loss 0.954710916062407 0 0.61740315 0 prediction 0.909421832124814 Functional Loss - NEFM ENSG00000104722 CDS Human protein_coding chr8:24771433 chr8:24771433 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_49143 0 0 0 0 0 exosome 0.500244062445344 0 0.2348063 0.000488124890687613 hm5C_site_4463 DeepMRMD:0.2348063;iRNA_m5C:0.000488124890687613 4464 chr1 239550151 239550151 1 + C G rs575580162 239550151 + 239550131 239550171 41 GTGCAGGGGAGCACAGGGCGCGGGGGCGGCACTGCCGAGCC GTGCAGGGGAGCACAGGGCGGGGGGGCGGCACTGCCGAGCC Direct Loss 0.954704681125262 0 0.9052346 0 prediction 0.909409362250524 Functional Loss - CHRM3 ENSG00000227185;NONE intergenic Human other chr1:239550151 chr1:239550151 . . 0 21 hm5C_associated_SNPs_49144 0 0 0 0 0 exosome 0.50023578352572 0 0.8104692 0.000471567051440802 hm5C_site_4464 DeepMRMD:0.8104692;iRNA_m5C:0.000471567051440802 4465 chr19 38795285 38795285 1 + G A STAD 38795285 - 38795265 38795305 41 GCTGGAGCTGCTGCTGGAGTCGGAAGAGCTGTGGTGTCCTT GCTGGAGCTGCTGCTGGAGTTGGAAGAGCTGTGGTGTCCTT Direct Loss 0.954703496089079 0 0.87913966 0 prediction 0.909406992178159 Functional Loss - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795285 chr19:38795285 nonsynonymous SNV 0.591 1 21 hm5C_associated_SNPs_49145 0 0 0 0 0 Ribosome 0.500231661590129 0 0.75827932 0.000463323180258435 hm5C_site_4465 DeepMRMD:0.75827932;iRNA_m5C:0.000463323180258435 4466 chr5 94956089 94956089 1 + C G BLCA 94956089 + 94956069 94956109 41 GGGGCAAGGAGCCCCTGCCTCTGGGCCGCCCAGCCGCCGCG GGGGCAAGGAGCCCCTGCCTGTGGGCCGCCCAGCCGCCGCG Direct Loss 0.954686079861152 0 0.919981 0 prediction 0.909372159722305 Functional Loss - GPR150 ENSG00000178015 CDS Human protein_coding chr5:94956089 chr5:94956089 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_49146 0 0 0 0 0 exosome 0.500231643921092 0 0.839962 0.000463287842184856 hm5C_site_4466 DeepMRMD:0.839962;iRNA_m5C:0.000463287842184856 4467 chr1 10471519 10471519 1 + C T COAD 10471519 + 10471499 10471539 41 TTCGTGAAGATGGTGCACAACGGGATAGAGTATGGGGACAT TTCGTGAAGATGGTGCACAATGGGATAGAGTATGGGGACAT Direct Loss 0.954683902618828 0 0.51110625 0 prediction 0.909367805237657 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10471519 chr1:10471519 synonymous SNV . 0 21 hm5C_associated_SNPs_49147 0 0 1 0 2 Cytosol 0.500231643920511 0 0.0222125 0.000463287841022453 hm5C_site_4467 DeepMRMD:0.0222125;iRNA_m5C:0.000463287841022453 4468 chr22 40800334 40800334 1 + C T KIRP 40800334 + 40800314 40800354 41 GGCTGCGGTGGCAGGCCCACCTGGAGTTCACCCATAACCAC GGCTGCGGTGGCAGGCCCACTTGGAGTTCACCCATAACCAC Direct Loss 0.954681984241521 0 0.40253395 0 prediction 0.909363968483041 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40800334 chr22:40800334 synonymous SNV . 0 21 hm5C_associated_SNPs_49148 0 0 1 0 2 Cytosol 0.500276541936063 0 0 0.000553083872125937 hm5C_site_4468 DeepMRMD:0;iRNA_m5C:0.000553083872125937 4469 chr22 37962530 37962530 1 + C T SKCM 37962530 + 37962510 37962550 41 GGCCGTGGCGGGGATGTCTTCGGGGACACGTCCTTCCTCAG GGCCGTGGCGGGGATGTCTTTGGGGACACGTCCTTCCTCAG Direct Loss 0.954651370596209 0 0.9542614 0 prediction 0.909302741192418 Functional Loss - CDC42EP1 ENSG00000128283 CDS Human protein_coding chr22:37962530 chr22:37962530 synonymous SNV . 0 21 hm5C_associated_SNPs_49149 0 0 1 0 0 Ribosome 0.500231643921092 0 0.9085228 0.000463287842184856 hm5C_site_4469 DeepMRMD:0.9085228;iRNA_m5C:0.000463287842184856 4470 chr16 85948094 85948094 1 + C T COAD 85948094 + 85948074 85948114 41 TGCAGGCGTGCCGCTGGTGACGGGGTACACCACCTACGACG TGCAGGCGTGCCGCTGGTGATGGGGTACACCACCTACGACG Direct Loss 0.954624842416116 0 0.93813753 0 prediction 0.909249684832232 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85948094 chr16:85948094 nonsynonymous SNV 0.086 1 21 hm5C_associated_SNPs_49150 0 0 0 0 2 Endoplasmic reticulum 0.500231643888649 0 0.87627506 0.00046328777729876 hm5C_site_4470 DeepMRMD:0.87627506;iRNA_m5C:0.00046328777729876 4471 chr5 29172371 29172371 1 + C A rs563988887 29172371 + 29172351 29172391 41 AGCTACCCGGGAGGCTGAGGCGGGAGAATGGCGCGAACCTG AGCTACCCGGGAGGCTGAGGAGGGAGAATGGCGCGAACCTG Direct Loss 0.954607427862086 0 0.93021524 0 prediction 0.909214855724172 Functional Loss - LINC02109 ENSG00000259786 ncRNA_exonic Human lincRNA chr5:29172371 chr5:29172371 . . 0 21 hm5C_associated_SNPs_49151 0 0 0 0 0 unknown 0.500231643827328 0 0.86043048 0.000463287654655531 hm5C_site_4471 DeepMRMD:0.86043048;iRNA_m5C:0.000463287654655531 4472 chr20 25656453 25656453 1 + G A UCEC 25656453 - 25656433 25656473 41 AGGAGAAGCCTTATGGATGTCGGGAGTGTGGGCGAAGGTTT AGGAGAAGCCTTATGGATGTTGGGAGTGTGGGCGAAGGTTT Direct Loss 0.954587476583975 0 0.27405804 0 prediction 0.909174953167951 Functional Loss - ZNF337 ENSG00000130684 CDS Human protein_coding chr20:25656453 chr20:25656453 nonsynonymous SNV 0.065 2 21 hm5C_associated_SNPs_49152 0 0 1 0 0 Cytosol 0.50023164392112 0 0 0.000463287842239701 hm5C_site_4472 DeepMRMD:0;iRNA_m5C:0.000463287842239701 4473 chr6 46803091 46803091 1 + C T SKCM 46803091 + 46803071 46803111 41 GCAGGTCTCCGAAGAAGGTTCGGGAAAGGCCATGTTAGAGG GCAGGTCTCCGAAGAAGGTTTGGGAAAGGCCATGTTAGAGG Direct Loss 0.954584108163425 0 0.6076315 0 prediction 0.90916821632685 Functional Loss - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46803091 chr6:46803091 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49153 0 0 0 0 0 cytosol 0.500231643921092 0 0.215263 0.000463287842184856 hm5C_site_4473 DeepMRMD:0.215263;iRNA_m5C:0.000463287842184856 4474 chr10 116048956 116048956 1 + C T UCEC 116048956 + 116048936 116048976 41 CTAGGTGGGGTGGGCTCAGCCGGCACCGCCCTGCTGCACAT CTAGGTGGGGTGGGCTCAGCTGGCACCGCCCTGCTGCACAT Direct Loss 0.954583712055046 0 0.44974777 0 prediction 0.909167424110092 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116048956 chr10:116048956 synonymous SNV . 0 21 hm5C_associated_SNPs_49154 0 0 0 0 0 exosome 0.500231643921076 0 0 0.000463287842152882 hm5C_site_4474 DeepMRMD:0;iRNA_m5C:0.000463287842152882 4475 chr7 138487711 138487711 1 + C T STAD 138487711 + 138487691 138487731 41 GGACGAGTACGGCTGGATCGCGGCAGCTGTTGGCTGGAGCC GGACGAGTACGGCTGGATCGTGGCAGCTGTTGGCTGGAGCC Direct Loss 0.95458104475363 0 0.8940798 0 prediction 0.90916208950726 Functional Loss - TMEM213 ENSG00000214128 CDS Human protein_coding chr7:138487711 chr7:138487711 nonsynonymous SNV 0.981 2 21 hm5C_associated_SNPs_49155 0 0 0 0 1 nucleus 0.500231643921092 0 0.7881596 0.000463287842184856 hm5C_site_4475 DeepMRMD:0.7881596;iRNA_m5C:0.000463287842184856 4476 chr12 13154331 13154331 1 + C T rs556742246 13154331 + 13154311 13154351 41 TGGGCCGGGCGGAGGGGAACCGGCGAGTTGAAGCCCCGGGG TGGGCCGGGCGGAGGGGAACTGGCGAGTTGAAGCCCCGGGG Direct Loss 0.954579502739079 0 0.905558 0 prediction 0.909159005478158 Functional Loss - HTR7P1 ENSG00000183935 ncRNA_exonic Human transcribed_processed_pseudogene chr12:13154331 chr12:13154331 . . 0 21 hm5C_associated_SNPs_49156 0 0 0 0 0 unknown 0.500231643921092 0 0.811116 0.000463287842184856 hm5C_site_4476 DeepMRMD:0.811116;iRNA_m5C:0.000463287842184856 4477 chr19 7711139 7711139 1 + C T COAD 7711139 + 7711119 7711159 41 CCTGCCCTGCCTGTAGGGCTCGGGGACCTCCAGCCGGCTGG CCTGCCCTGCCTGTAGGGCTTGGGGACCTCCAGCCGGCTGG Direct Loss 0.954563744309038 0 0.9452714 0 prediction 0.909127488618076 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711139 chr19:7711139 nonsynonymous SNV 0.042 0 21 hm5C_associated_SNPs_49157 0 0 1 0 2 chromatin 0.500231643921092 0 0.8905428 0.000463287842184856 hm5C_site_4477 DeepMRMD:0.8905428;iRNA_m5C:0.000463287842184856 4478 chr19 50028001 50028001 1 + C T COAD 50028001 + 50027981 50028021 41 CTGCTGCATTGTGCAGCACGCGGGGCTGGCGCAGCCCCTCA CTGCTGCATTGTGCAGCACGTGGGGCTGGCGCAGCCCCTCA Direct Loss 0.954541347230819 0 0.9146395 0 prediction 0.909082694461639 Functional Loss - FCGRT ENSG00000104870 CDS Human protein_coding chr19:50028001 chr19:50028001 nonsynonymous SNV 0.333 1 21 hm5C_associated_SNPs_49158 0 0 1 0 1 Endoplasmic reticulum 0.500231643921093 0 0.829279 0.000463287842185078 hm5C_site_4478 DeepMRMD:0.829279;iRNA_m5C:0.000463287842185078 4479 chr17 40719147 40719147 1 + C G ESCA 40719147 + 40719127 40719167 41 GTCCGGTGGGTACAAGATGACGGAGCCGGGCGCCTCTCCCG GTCCGGTGGGTACAAGATGAGGGAGCCGGGCGCCTCTCCCG Direct Loss 0.954526869096699 0 0.8873218 0 prediction 0.909053738193397 Functional Loss - MLX ENSG00000108788 CDS Human protein_coding chr17:40719147 chr17:40719147 nonsynonymous SNV 0.940 3 21 hm5C_associated_SNPs_49159 0 0 1 0 0 Ribosome 0.500231643921092 0 0.7746436 0.000463287842184856 hm5C_site_4479 DeepMRMD:0.7746436;iRNA_m5C:0.000463287842184856 4480 chr2 39934241 39934241 1 + C T HNSC 39934241 + 39934221 39934261 41 ATGGCCGTAGCCGTCCTTCTCTGCGGCTGCATTGTGGCCAC ATGGCCGTAGCCGTCCTTCTTTGCGGCTGCATTGTGGCCAC Direct Loss 0.954507700871843 0 0.9067687 0 prediction 0.909015401743685 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39934241 chr2:39934241 synonymous SNV . 0 21 hm5C_associated_SNPs_49160 0 0 0 0 2 exosome 0.500231643925691 0 0.8135374 0.0004632878513815 hm5C_site_4480 DeepMRMD:0.8135374;iRNA_m5C:0.0004632878513815 4481 chr11 120097696 120097696 1 + C T UCEC 120097696 + 120097676 120097716 41 AGGAGGATGTCCGGTTCTGGCTGGAGCAAGGTCAGCTGGGA AGGAGGATGTCCGGTTCTGGTTGGAGCAAGGTCAGCTGGGA Direct Loss 0.954500278573324 0 0.553793 0 prediction 0.909000557146649 Functional Loss - OAF ENSG00000184232 CDS Human protein_coding chr11:120097696 chr11:120097696 synonymous SNV . 0 21 hm5C_associated_SNPs_49161 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0 0.107586 0.000463287842184856 hm5C_site_4481 DeepMRMD:0.107586;iRNA_m5C:0.000463287842184856 4482 chr19 50436176 50436176 1 + C T CESC 50436176 + 50436156 50436196 41 AGTCGGCGGCTCTGAGGTACCGCCAGCGGAAGCGGGCAGAG AGTCGGCGGCTCTGAGGTACTGCCAGCGGAAGCGGGCAGAG Direct Loss 0.954493972212877 0 0.4223617 0 prediction 0.908987944425754 Functional Loss - ATF5 ENSG00000169136 CDS Human protein_coding chr19:50436176 chr19:50436176 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49162 0 0 1 0 0 Cytosol 0.500231643565704 0 0 0.000463287131407863 hm5C_site_4482 DeepMRMD:0;iRNA_m5C:0.000463287131407863 4483 chr1 154246309 154246309 1 + C T HNSC 154246309 + 154246289 154246329 41 TACGGGAGGGACAGACACTTCGGGACTCAATGCTTAAGTAT TACGGGAGGGACAGACACTTTGGGACTCAATGCTTAAGTAT Direct Loss 0.954483257232931 0 0.7559672 0 prediction 0.908966514465861 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154246309 chr1:154246309 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_49163 0 0 1 0 2 Cytosol 0.500231643157638 0 0.5119344 0.000463286315276479 hm5C_site_4483 DeepMRMD:0.5119344;iRNA_m5C:0.000463286315276479 4484 chrX 66766412 66766412 1 + C T rs200390780 66766412 + 66766392 66766432 41 CGGCGGCGGCGGCGGCGAGGCGGGAGCTGTAGCCCCCTACG CGGCGGCGGCGGCGGCGAGGTGGGAGCTGTAGCCCCCTACG Direct Loss 0.954469492654496 0 0.95114154 0 prediction 0.908938985308992 Functional Loss - AR ENSG00000169083 CDS Human protein_coding chrX:66766412 chrX:66766412 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_49164 0 0 0 0 0 Endoplasmic reticulum 0.500231643920634 0 0.90228308 0.000463287841267368 hm5C_site_4484 DeepMRMD:0.90228308;iRNA_m5C:0.000463287841267368 4485 chr15 40751318 40751318 1 + C T GBM 40751318 + 40751298 40751338 41 TCCTAAAACTGAGCCAGGAGCGGGAGCTACCCCTGCGGCTG TCCTAAAACTGAGCCAGGAGTGGGAGCTACCCCTGCGGCTG Direct Loss 0.954433020241663 0 0.93062973 0 prediction 0.908866040483327 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40751318 chr15:40751318 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49165 0 0 1 0 0 chromatin 0.500231657174309 0 0.86125946 0.000463314348618571 hm5C_site_4485 DeepMRMD:0.86125946;iRNA_m5C:0.000463314348618571 4486 chrX 54837536 54837536 1 + C T UCEC 54837536 + 54837516 54837556 41 AGCCTGAAGCACCACCACCTCGGGATGTGGCCCTTTTGCAA AGCCTGAAGCACCACCACCTTGGGATGTGGCCCTTTTGCAA Direct Loss 0.954423012615012 0 0.8981379 0 prediction 0.908846025230023 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54837536 chrX:54837536 nonsynonymous SNV 0.945 3 21 hm5C_associated_SNPs_49166 0 0 1 0 1 chromatin 0.500231643104182 0 0.7962758 0.000463286208363334 hm5C_site_4486 DeepMRMD:0.7962758;iRNA_m5C:0.000463286208363334 4487 chr1 1848604 1848604 1 + C T UCEC 1848604 + 1848584 1848624 41 AGAGTTTGTGGCCATGATGACGGGGGAGTCCTTCAAGCTGA AGAGTTTGTGGCCATGATGATGGGGGAGTCCTTCAAGCTGA Direct Loss 0.954416960817801 0 0.91686356 0 prediction 0.908833921635602 Functional Loss - CALML6 ENSG00000169885 CDS Human protein_coding chr1:1848604 chr1:1848604 nonsynonymous SNV 0.989 2 21 hm5C_associated_SNPs_49167 0 0 0 0 1 exosome 0.500231643921093 0 0.83372712 0.000463287842185078 hm5C_site_4487 DeepMRMD:0.83372712;iRNA_m5C:0.000463287842185078 4488 chr19 32971419 32971419 1 + C T PAAD 32971419 + 32971399 32971439 41 GCTACGAGCGGAGGCACCGCCGGGGCTGCCGACTCCGGGAC GCTACGAGCGGAGGCACCGCTGGGGCTGCCGACTCCGGGAC Direct Loss 0.954415570173377 0 0.9319376 0 prediction 0.908831140346755 Functional Loss - DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32971419 chr19:32971419 nonsynonymous SNV 0.862 4 21 hm5C_associated_SNPs_49168 0 0 1 0 1 cytosol 0.500231641319512 0 0.8638752 0.000463282639024953 hm5C_site_4488 DeepMRMD:0.8638752;iRNA_m5C:0.000463282639024953 4489 chr5 33461093 33461093 1 + C A OV 33461093 + 33461073 33461113 41 ACTTCATAGGAACGAGCTGTCTGGAGCACTCACAGGACTCA ACTTCATAGGAACGAGCTGTATGGAGCACTCACAGGACTCA Direct Loss 0.954409830400828 0 0.3296374 0 prediction 0.908819660801657 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33461093 chr5:33461093 nonsynonymous SNV 0.937 4 21 hm5C_associated_SNPs_49169 0 0 1 0 2 Nucleus 0.500231613667403 0 0 0.000463227334806415 hm5C_site_4489 DeepMRMD:0;iRNA_m5C:0.000463227334806415 4490 chr9 124072978 124072978 1 + C T UCEC 124072978 + 124072958 124072998 41 ACAGAAAGGAGGTGTGGCATCAGGATTCAAGCACGTGGTAC ACAGAAAGGAGGTGTGGCATTAGGATTCAAGCACGTGGTAC Direct Loss 0.954401905086673 0 0.9044943 0 prediction 0.908803810173347 Functional Loss - GSN ENSG00000148180 CDS Human protein_coding chr9:124072978 chr9:124072978 nonsynonymous SNV 0.973 4 21 hm5C_associated_SNPs_49170 0 0 1 0 1 Cytosol 0.500231208698889 0 0.8089886 0.000462417397778081 hm5C_site_4490 DeepMRMD:0.8089886;iRNA_m5C:0.000462417397778081 4491 chr16 5083833 5083833 1 + G A rs74952829 5083833 - 5083813 5083853 41 AGCGTCCGGCGGCCTCGACTCGGGGTGAGTGCAGCTCCCTG AGCGTCCGGCGGCCTCGACTTGGGGTGAGTGCAGCTCCCTG Direct Loss 0.954380227223502 0 0.9522877 0 prediction 0.908760454447003 Functional Loss - NAGPA ENSG00000103174 CDS Human protein_coding chr16:5083833 chr16:5083833 nonsynonymous SNV 0.248 0 21 hm5C_associated_SNPs_49171 0 0 1 0 1 cytosol 0.500231034115185 0 0.9045754 0.000462068230369539 hm5C_site_4491 DeepMRMD:0.9045754;iRNA_m5C:0.000462068230369539 4492 chr17 8167548 8167548 1 + C T SKCM 8167548 + 8167528 8167568 41 AGATAGTGCTGGTGGACGATCGGGAGTGTCCTGTCAGAAGA AGATAGTGCTGGTGGACGATTGGGAGTGTCCTGTCAGAAGA Direct Loss 0.95437402994805 0 0.9264729 0 prediction 0.908748059896099 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8167548 chr17:8167548 nonsynonymous SNV 0.752 3 21 hm5C_associated_SNPs_49172 0 0 1 0 1 Nucleus 0.500231643921085 0 0.8529458 0.000463287842170867 hm5C_site_4492 DeepMRMD:0.8529458;iRNA_m5C:0.000463287842170867 4493 chr7 121943977 121943977 1 + G A LAML 121943977 - 121943957 121943997 41 AGGTGACGGCCCATGCCACCCGGCAGCCGGCGTGAACATCC AGGTGACGGCCCATGCCACCTGGCAGCCGGCGTGAACATCC Direct Loss 0.954370063373638 0 0.16974041 0 prediction 0.908740126747275 Functional Loss - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121943977 chr7:121943977 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_49173 0 0 0 0 0 exosome 0.500231642255702 0 0 0.000463284511404538 hm5C_site_4493 DeepMRMD:0;iRNA_m5C:0.000463284511404538 4494 chr16 68289235 68289235 1 + C T UCEC 68289235 + 68289215 68289255 41 TTGTGGGCTGGGGCTACACACGGGGTGAGGATGTCCGAGGG TTGTGGGCTGGGGCTACACATGGGGTGAGGATGTCCGAGGG Direct Loss 0.954366851062743 0 0.9572647 0 prediction 0.908733702125487 Functional Loss - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68289235 chr16:68289235 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49174 0 0 0 0 2 Ribosome 0.500231643921074 0 0.9145294 0.000463287842147109 hm5C_site_4494 DeepMRMD:0.9145294;iRNA_m5C:0.000463287842147109 4495 chr7 27282909 27282909 1 + C T rs546856629 27282909 + 27282889 27282929 41 GGGCGCCGAGCCCCAGGTAGCTGGGGCGGCCATGCTCGGCC GGGCGCCGAGCCCCAGGTAGTTGGGGCGGCCATGCTCGGCC Direct Loss 0.95436521900784 0 0.91446126 0 prediction 0.90873043801568 Functional Loss - EVX1 ENSG00000106038 CDS Human protein_coding chr7:27282909 chr7:27282909 nonsynonymous SNV 0.055 1 21 hm5C_associated_SNPs_49175 0 0 0 0 0 unknown 0.500231643921093 0 0.82892252 0.000463287842185078 hm5C_site_4495 DeepMRMD:0.82892252;iRNA_m5C:0.000463287842185078 4496 chr1 248525097 248525097 1 + C A COAD 248525097 + 248525077 248525117 41 GGTTTTCCTGATGGCGTTGTCTGGAAATGCTGTCCTGATCC GGTTTTCCTGATGGCGTTGTATGGAAATGCTGTCCTGATCC Direct Loss 0.954347739016162 0 0.44131213 0 prediction 0.908695478032324 Functional Loss - OR2T4 ENSG00000196944 CDS Human protein_coding chr1:248525097 chr1:248525097 nonsynonymous SNV 0.155 1 21 hm5C_associated_SNPs_49176 0 0 0 0 0 unknown 0.500231643921422 0 0 0.000463287842844107 hm5C_site_4496 DeepMRMD:0;iRNA_m5C:0.000463287842844107 4497 chr1 165624631 165624631 1 + C A UCEC 165624631 + 165624611 165624651 41 GCAAGCGTAGTCGAGGAGCCCTGGGGTCCATCGCCCTCCTG GCAAGCGTAGTCGAGGAGCCATGGGGTCCATCGCCCTCCTG Direct Loss 0.954346113958062 0 0.9171835 0 prediction 0.908692227916124 Functional Loss - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165624631 chr1:165624631 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_49177 0 0 1 0 1 Ribosome 0.500231643921091 0 0.834367 0.000463287842182192 hm5C_site_4497 DeepMRMD:0.834367;iRNA_m5C:0.000463287842182192 4498 chr6 160218495 160218495 1 + C T UCEC 160218495 + 160218475 160218515 41 GGCACAGAGATGCTTAGAGGCGGGAATCAACTTCATGGTCT GGCACAGAGATGCTTAGAGGTGGGAATCAACTTCATGGTCT Direct Loss 0.954320842593123 0 0.8593527 0 prediction 0.908641685186245 Functional Loss - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218495 chr6:160218495 nonsynonymous SNV 0.960 4 21 hm5C_associated_SNPs_49178 0 0 1 0 1 Cytosol 0.500231643908956 0 0.7187054 0.000463287817912716 hm5C_site_4498 DeepMRMD:0.7187054;iRNA_m5C:0.000463287817912716 4499 chr3 140401620 140401620 1 + C A LUSC 140401620 + 140401600 140401640 41 GTCTCACCAAGCGCTACATGCAGGAGCACGGCTACCTCAAG GTCTCACCAAGCGCTACATGAAGGAGCACGGCTACCTCAAG Direct Loss 0.954314804008885 0 0.93136525 0 prediction 0.90862960801777 Functional Loss - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140401620 chr3:140401620 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_49179 0 0 0 0 0 exosome 0.500231643922788 0 0.8627305 0.000463287845575922 hm5C_site_4499 DeepMRMD:0.8627305;iRNA_m5C:0.000463287845575922 4500 chr1 228675246 228675246 1 + C A rs536308340 228675246 + 228675226 228675266 41 GCCCTGTGCCAGCGCGCGCCCCGGGAACCGGTGCGCGCCGA GCCCTGTGCCAGCGCGCGCCACGGGAACCGGTGCGCGCCGA Direct Loss 0.954310545475778 0 0.91466415 0 prediction 0.908621090951556 Functional Loss - RNF187 ENSG00000168159 UTR5 Human protein_coding chr1:228675246 chr1:228675246 . . 0 21 hm5C_associated_SNPs_49180 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8293283 0.000463287842184856 hm5C_site_4500 DeepMRMD:0.8293283;iRNA_m5C:0.000463287842184856 4501 chr10 88414554 88414554 1 + C T rs143330369 88414554 + 88414534 88414574 41 ACTCAGGATGAACCCTCCTTCGGGGCCAAGAGTCCCGCCCA ACTCAGGATGAACCCTCCTTTGGGGCCAAGAGTCCCGCCCA Direct Loss 0.954273543905026 0 0.9438384 0 prediction 0.908547087810051 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88414554 chr10:88414554 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_49181 0 0 0 0 0 exosome 0.500231643921092 0 0.8876768 0.000463287842184856 hm5C_site_4501 DeepMRMD:0.8876768;iRNA_m5C:0.000463287842184856 4502 chr2 119739044 119739044 1 + C A CHOL 119739044 + 119739024 119739064 41 TCATGGGGCCTCCTGGAGCCCAGGGGAGTAAAGGTGACTTC TCATGGGGCCTCCTGGAGCCAAGGGGAGTAAAGGTGACTTC Direct Loss 0.954264976268796 0 0.90067226 0 prediction 0.908529952537592 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739044 chr2:119739044 nonsynonymous SNV 0.976 1 21 hm5C_associated_SNPs_49182 0 0 0 0 2 exosome 0.500231643920483 0 0.80134452 0.000463287840965165 hm5C_site_4502 DeepMRMD:0.80134452;iRNA_m5C:0.000463287840965165 4503 chrX 49022668 49022668 1 + C T UCEC 49022668 + 49022648 49022688 41 GCCCAGCGAGGAACGGCTCTCGCGGGCCCTAGGGGTCCGGG GCCCAGCGAGGAACGGCTCTTGCGGGCCCTAGGGGTCCGGG Direct Loss 0.954262399793103 0 0.9377847 0 prediction 0.908524799586206 Functional Loss - MAGIX ENSG00000017621 CDS Human other chrX:49022668 chrX:49022668 nonsynonymous SNV 0.050 2 21 hm5C_associated_SNPs_49183 0 0 0 0 0 nucleus 0.500231643921092 0 0.8755694 0.000463287842184856 hm5C_site_4503 DeepMRMD:0.8755694;iRNA_m5C:0.000463287842184856 4504 chr19 17638174 17638174 1 + C T rs201383126 17638174 + 17638154 17638194 41 GTGGGCGGCCTTCGAGCCCTCTGGACAAGCAGCAGCGGCAG GTGGGCGGCCTTCGAGCCCTTTGGACAAGCAGCAGCGGCAG Direct Loss 0.954260265264906 0 0.7188091 0 prediction 0.908520530529811 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17638174 chr19:17638174 synonymous SNV . 0 21 hm5C_associated_SNPs_49184 0 0 0 0 1 exosome 0.500231643926144 0 0.4376182 0.000463287852288996 hm5C_site_4504 DeepMRMD:0.4376182;iRNA_m5C:0.000463287852288996 4505 chr11 397293 397293 1 + C T BLCA 397293 + 397273 397313 41 CACCGGAGCCGCGGGGTAGGCGGGGCAGTGCCGGGGGCCGT CACCGGAGCCGCGGGGTAGGTGGGGCAGTGCCGGGGGCCGT Direct Loss 0.954257511729184 0 0.91346335 0 prediction 0.908515023458369 Functional Loss - PKP3 ENSG00000184363 CDS Human protein_coding chr11:397293 chr11:397293 synonymous SNV . 0 21 hm5C_associated_SNPs_49185 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8269267 0.000463287842184856 hm5C_site_4505 DeepMRMD:0.8269267;iRNA_m5C:0.000463287842184856 4506 chr1 168260509 168260509 1 + C T UCEC 168260509 + 168260489 168260529 41 CACCGCTGGAAGTACGTCAACGGGGAATGGGTGCCCGCTGG CACCGCTGGAAGTACGTCAATGGGGAATGGGTGCCCGCTGG Direct Loss 0.954248322402166 0 0.9239499 0 prediction 0.908496644804332 Functional Loss - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168260509 chr1:168260509 synonymous SNV . 0 21 hm5C_associated_SNPs_49186 1 0 0 0 0 cytosol 0.500231643921092 0 0.8478998 0.000463287842184856 hm5C_site_4506 DeepMRMD:0.8478998;iRNA_m5C:0.000463287842184856 ACTH deficiency ACTH deficiency 4507 chr3 179298935 179298935 1 + C A HNSC 179298935 + 179298915 179298955 41 TCTTTTGTTGTAGGGGTTATCAGGAAACACAATGTTAGGAG TCTTTTGTTGTAGGGGTTATAAGGAAACACAATGTTAGGAG Direct Loss 0.954247047397211 0 0.9256835 0 prediction 0.908494094794423 Functional Loss - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179298935 chr3:179298935 stopgain 0.734 1 21 hm5C_associated_SNPs_49187 0 0 1 0 2 Ribosome 0.500231643921092 0 0.851367 0.000463287842184856 hm5C_site_4507 DeepMRMD:0.851367;iRNA_m5C:0.000463287842184856 4508 chr1 113616068 113616068 1 + C T UCEC 113616068 + 113616048 113616088 41 GCGTCCCGGAGGAGCAGTTGCTGGGGTGTCGATCTAGAGTG GCGTCCCGGAGGAGCAGTTGTTGGGGTGTCGATCTAGAGTG Direct Loss 0.954239049508079 0 0.92437345 0 prediction 0.908478099016159 Functional Loss - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113616068 chr1:113616068 synonymous SNV . 0 21 hm5C_associated_SNPs_49188 0 0 1 0 0 Nucleus 0.500231643920953 0 0.8487469 0.000463287841905746 hm5C_site_4508 DeepMRMD:0.8487469;iRNA_m5C:0.000463287841905746 4509 chr6 35995941 35995941 1 + C T SKCM 35995941 + 35995921 35995961 41 GCTGCCGCTGGAAAATGTCTCAGGAGAGGCCCACGTTCTAC GCTGCCGCTGGAAAATGTCTTAGGAGAGGCCCACGTTCTAC Direct Loss 0.954236648155624 0 0.9263092 0 prediction 0.908473296311247 Functional Loss - MAPK14 ENSG00000112062 CDS Human protein_coding chr6:35995941 chr6:35995941 stopgain 0.998 1 21 hm5C_associated_SNPs_49189 0 0 1 0 0 Ribosome 0.500231643927689 0 0.8526184 0.000463287855377859 hm5C_site_4509 DeepMRMD:0.8526184;iRNA_m5C:0.000463287855377859 4510 chr3 45077404 45077404 1 + C A LUAD 45077404 + 45077384 45077424 41 CTGCCCTACATCTGCCAGTTCGGGATCGTGTAGCCGGCGGG CTGCCCTACATCTGCCAGTTAGGGATCGTGTAGCCGGCGGG Direct Loss 0.954214249679554 0 0.7788553 0 prediction 0.908428499359107 Functional Loss - CLEC3B ENSG00000163815 CDS Human protein_coding chr3:45077404 chr3:45077404 nonsynonymous SNV 0.601 4 21 hm5C_associated_SNPs_49190 0 0 0 0 0 Cytosol 0.500231643921092 0 0.5577106 0.000463287842184856 hm5C_site_4510 DeepMRMD:0.5577106;iRNA_m5C:0.000463287842184856 4511 chr11 8710545 8710545 1 + C T rs550389180 8710545 + 8710525 8710565 41 CCGGTGAGTAGCTTCTACTTCCGGAGACGATGACTCCCCCG CCGGTGAGTAGCTTCTACTTTCGGAGACGATGACTCCCCCG Direct Loss 0.954190818660269 0 0.8839724 0 prediction 0.908381637320538 Functional Loss - RPL27A ENSG00000166441 UTR3 Human protein_coding chr11:8710545 chr11:8710545 . . 0 21 hm5C_associated_SNPs_49191 0 0 1 0 0 Cytosol 0.500231643921139 0 0.7679448 0.000463287842278559 hm5C_site_4511 DeepMRMD:0.7679448;iRNA_m5C:0.000463287842278559 4512 chr2 202899847 202899847 1 + C T UCEC 202899847 + 202899827 202899867 41 GTGCACGGTGCGGGCGAGATCTGCGTGGGCCAGAACACGTC GTGCACGGTGCGGGCGAGATTTGCGTGGGCCAGAACACGTC Direct Loss 0.954186860050772 0 0.36999953 0 prediction 0.908373720101544 Functional Loss - FZD7 ENSG00000155760 CDS Human protein_coding chr2:202899847 chr2:202899847 synonymous SNV . 0 21 hm5C_associated_SNPs_49192 0 0 1 0 0 Endoplasmic reticulum 0.500231643920154 0 0 0.000463287840307913 hm5C_site_4512 DeepMRMD:0;iRNA_m5C:0.000463287840307913 4513 chr2 121104187 121104187 1 + C T LUAD 121104187 + 121104167 121104207 41 GACGGCCAGGAGCGCGTTTCCGAAATCATCAGCTTCGCCGA GACGGCCAGGAGCGCGTTTCTGAAATCATCAGCTTCGCCGA Direct Loss 0.95417763018183 0 0.87037826 0 prediction 0.90835526036366 Functional Loss - INHBB ENSG00000163083 CDS Human protein_coding chr2:121104187 chr2:121104187 synonymous SNV . 0 21 hm5C_associated_SNPs_49193 0 0 0 0 1 Endoplasmic reticulum 0.500231643921097 0 0.74075652 0.00046328784219396 hm5C_site_4513 DeepMRMD:0.74075652;iRNA_m5C:0.00046328784219396 4514 chr9 72006645 72006645 1 + C T ESCA 72006645 + 72006625 72006665 41 CCAGCGGGGAGGCCCCGAGCCGAGAGGAGGCCCCGGCGAGT CCAGCGGGGAGGCCCCGAGCTGAGAGGAGGCCCCGGCGAGT Direct Loss 0.954177488493879 0 0.83293146 0 prediction 0.908354976987758 Functional Loss - FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:72006645 chr9:72006645 synonymous SNV . 0 21 hm5C_associated_SNPs_49194 0 0 0 0 0 cytosol 0.500231599922509 0 0.66586292 0.000463199845017082 hm5C_site_4514 DeepMRMD:0.66586292;iRNA_m5C:0.000463199845017082 4515 chr1 20005098 20005098 1 + C T PCPG 20005098 + 20005078 20005118 41 CCAGGGGTGGAGTCTGCTGACAGCAGGCGTCTAGCCACGAA CCAGGGGTGGAGTCTGCTGATAGCAGGCGTCTAGCCACGAA Direct Loss 0.954175617886691 0 0.2614057 0 prediction 0.908351235773383 Functional Loss - HTR6 ENSG00000158748 CDS Human protein_coding chr1:20005098 chr1:20005098 synonymous SNV . 0 21 hm5C_associated_SNPs_49195 0 0 0 0 1 Cytosol 0.500231643914016 0 0 0.000463287828031955 hm5C_site_4515 DeepMRMD:0;iRNA_m5C:0.000463287828031955 4516 chr2 105472706 105472706 1 + C G rs537665161 105472706 + 105472686 105472726 41 CCCGGCGGCGGCGGCGGCGGCGCGGGCGGTGGAGCCCAGAG CCCGGCGGCGGCGGCGGCGGGGCGGGCGGTGGAGCCCAGAG Direct Loss 0.954175048076052 0 0.9182712 0 prediction 0.908350096152105 Functional Loss - POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472706 chr2:105472706 synonymous SNV . 0 21 hm5C_associated_SNPs_49196 0 0 0 0 0 exosome 0.500231643920953 0 0.8365424 0.00046328784190508 hm5C_site_4516 DeepMRMD:0.8365424;iRNA_m5C:0.00046328784190508 4517 chr17 51900757 51900757 1 + G A SKCM 51900757 - 51900737 51900777 41 CCTGAGGCTGTTTGGTTTTTCTGGGGGATCATCGCAACCCA CCTGAGGCTGTTTGGTTTTTTTGGGGGATCATCGCAACCCA Direct Loss 0.954154326016729 0 0.901546 0 prediction 0.908308652033458 Functional Loss - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51900757 chr17:51900757 synonymous SNV . 0 21 hm5C_associated_SNPs_49197 0 0 0 0 0 exosome 0.500231643925737 0 0.803092 0.00046328785147387 hm5C_site_4517 DeepMRMD:0.803092;iRNA_m5C:0.00046328785147387 4518 chr2 85843360 85843360 1 + C G rs200244374 85843360 + 85843340 85843380 41 GAGTCTCGCGGTTCCACTCGCGGGAAGCGAGAGTCTGAGTC GAGTCTCGCGGTTCCACTCGGGGGAAGCGAGAGTCTGAGTC Direct Loss 0.954150803231453 0 0.92863125 0 prediction 0.908301606462905 Functional Loss - USP39 ENSG00000168883 CDS Human protein_coding chr2:85843360 chr2:85843360 synonymous SNV . 0 21 hm5C_associated_SNPs_49198 0 0 1 0 0 Cytosol 0.500231643924099 0 0.8572625 0.00046328784819849 hm5C_site_4518 DeepMRMD:0.8572625;iRNA_m5C:0.00046328784819849 4519 chr17 34171650 34171650 1 + C T rs145295353 34171650 + 34171630 34171670 41 GGGGGCGGCTATGGTGGAGACAGAAGTGGGGGTGGCTATGG GGGGGCGGCTATGGTGGAGATAGAAGTGGGGGTGGCTATGG Direct Loss 0.954148402765446 0 0.88185686 0 prediction 0.908296805530892 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34171650 chr17:34171650 synonymous SNV . 0 21 hm5C_associated_SNPs_49199 0 0 1 0 0 Cytosol 0.500231643921114 0 0.76371372 0.000463287842228377 hm5C_site_4519 DeepMRMD:0.76371372;iRNA_m5C:0.000463287842228377 4520 chr15 60297453 60297453 1 + C G LUAD 60297453 + 60297433 60297473 41 CCAAGCTGCGGGGACATGTTCGAGAACGGCAGCTTCCTGCG CCAAGCTGCGGGGACATGTTGGAGAACGGCAGCTTCCTGCG Direct Loss 0.9541387468395 0 0.90806043 0 prediction 0.908277493679001 Functional Loss - FOXB1 ENSG00000171956 CDS Human protein_coding chr15:60297453 chr15:60297453 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_49200 0 0 0 0 0 exosome 0.500231643921093 0 0.81612086 0.000463287842185967 hm5C_site_4520 DeepMRMD:0.81612086;iRNA_m5C:0.000463287842185967 4521 chr16 2867279 2867279 1 + C T STAD 2867279 + 2867259 2867299 41 GAGAGGAGGCCATGGGCGCGCGCGGGGCGCTGCTGCTGGCG GAGAGGAGGCCATGGGCGCGTGCGGGGCGCTGCTGCTGGCG Direct Loss 0.95412849013704 0 0.8856368 0 prediction 0.908256980274079 Functional Loss - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2867279 chr16:2867279 nonsynonymous SNV 0.000 3 21 hm5C_associated_SNPs_49201 0 0 1 0 1 chromatin 0.500231643912911 0 0.7712736 0.000463287825822611 hm5C_site_4521 DeepMRMD:0.7712736;iRNA_m5C:0.000463287825822611 4522 chr3 150127834 150127834 1 + C T UCEC 150127834 + 150127814 150127854 41 TGGTAGTAGTGGCCTCCATGCAGGGGGCGCACGGGCCCGAG TGGTAGTAGTGGCCTCCATGTAGGGGGCGCACGGGCCCGAG Direct Loss 0.954127991485889 0 0.94474983 0 prediction 0.908255982971778 Functional Loss - TSC22D2 ENSG00000196428 CDS Human protein_coding chr3:150127834 chr3:150127834 stopgain 0.999 0 21 hm5C_associated_SNPs_49202 0 0 1 0 0 Ribosome 0.500231643921092 0 0.88949966 0.000463287842184856 hm5C_site_4522 DeepMRMD:0.88949966;iRNA_m5C:0.000463287842184856 4523 chr6 34741226 34741226 1 + C A UCEC 34741226 + 34741206 34741246 41 TTTGTTTTGTCCTGCAGCTCCTGGAATGAGGCCGCCCATGG TTTGTTTTGTCCTGCAGCTCATGGAATGAGGCCGCCCATGG Direct Loss 0.954120859849744 0 0.40960467 0 prediction 0.908241719699487 Functional Loss - SNRPC ENSG00000124562 CDS Human protein_coding chr6:34741226 chr6:34741226 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49203 0 0 1 0 1 Ribosome 0.500231643921088 0 0 0.000463287842175752 hm5C_site_4523 DeepMRMD:0;iRNA_m5C:0.000463287842175752 4524 chr19 1434842 1434842 1 + C T rs61735591 1434842 + 1434822 1434862 41 CCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCTTTGG CCAGGGTCGGGGGGCCCCCCTGCCGGCGGCAGCGGCTTTGG Direct Loss 0.954109643873185 0 0.41153884 0 prediction 0.90821928774637 Functional Loss - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434842 chr19:1434842 synonymous SNV . 0 21 hm5C_associated_SNPs_49204 0 0 1 0 0 chromatin 0.50023164392119 0 0 0.000463287842380478 hm5C_site_4524 DeepMRMD:0;iRNA_m5C:0.000463287842380478 4525 chr1 156900370 156900370 1 + C T UCEC 156900370 + 156900350 156900390 41 AGGGCAAAAGGGATCAAGATCGGGAGCAGAGAGAAGCGCAG AGGGCAAAAGGGATCAAGATTGGGAGCAGAGAGAAGCGCAG Direct Loss 0.954104062524568 0 0.9285269 0 prediction 0.908208125049135 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156900370 chr1:156900370 synonymous SNV . 0 21 hm5C_associated_SNPs_49205 0 0 0 0 2 exosome 0.500231643921092 0 0.8570538 0.000463287842184856 hm5C_site_4525 DeepMRMD:0.8570538;iRNA_m5C:0.000463287842184856 4526 chr6 147525628 147525628 1 + G A rs551986141 147525628 - 147525608 147525648 41 GCAGCCCGGGAGGGGAGGCACAGGGGGTCCCCGGGCGGGGG GCAGCCCGGGAGGGGAGGCATAGGGGGTCCCCGGGCGGGGG Direct Loss 0.954096329470685 0 0.9327417 0 prediction 0.908192658941369 Functional Loss - STXBP5-AS1 ENSG00000233452 ncRNA_exonic Human antisense chr6:147525628 chr6:147525628 . . 0 21 hm5C_associated_SNPs_49206 0 0 0 0 0 unknown 0.500231643848337 0 0.8654834 0.000463287696673254 hm5C_site_4526 DeepMRMD:0.8654834;iRNA_m5C:0.000463287696673254 4527 chr1 247655475 247655475 1 + C T rs148569848 247655475 + 247655455 247655495 41 TATTCAAGGAGTAGAGTGAACGCGGGTGGGAAAATGCTTTC TATTCAAGGAGTAGAGTGAATGCGGGTGGGAAAATGCTTTC Direct Loss 0.954084186588493 0 0.66704273 0 prediction 0.908168373176987 Functional Loss - OR2W5 ENSG00000203664 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:247655475 chr1:247655475 . . 0 21 hm5C_associated_SNPs_49207 0 0 0 0 0 unknown 0.500231643921092 0 0.33408546 0.000463287842184856 hm5C_site_4527 DeepMRMD:0.33408546;iRNA_m5C:0.000463287842184856 4528 chr17 55752363 55752363 1 + C G BLCA 55752363 + 55752343 55752383 41 GGCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGAC GGCGCGGCCCGGAGGCTTCCGGGGGGCCAACAGCCCAGGAC Direct Loss 0.95407611439294 0 0.9379586 0 prediction 0.908152228785879 Functional Loss - MSI2 ENSG00000153944 CDS Human protein_coding chr17:55752363 chr17:55752363 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49208 0 0 1 0 2 Nucleus 0.500231643921092 0 0.8759172 0.000463287842184856 hm5C_site_4528 DeepMRMD:0.8759172;iRNA_m5C:0.000463287842184856 4529 chr1 223567300 223567300 1 + C T SKCM 223567300 + 223567280 223567320 41 ACTCCCCTGAGTGGCACATTCAGGGTAGAAAAGGCACAGGG ACTCCCCTGAGTGGCACATTTAGGGTAGAAAAGGCACAGGG Direct Loss 0.954074710614085 0 0.91441274 0 prediction 0.908149421228171 Functional Loss - CCDC185 ENSG00000178395 CDS Human protein_coding chr1:223567300 chr1:223567300 synonymous SNV . 0 21 hm5C_associated_SNPs_49209 0 0 0 0 0 unknown 0.500231643921031 0 0.82882548 0.000463287842062066 hm5C_site_4529 DeepMRMD:0.82882548;iRNA_m5C:0.000463287842062066 4530 chr1 184020849 184020849 1 + C A rs61738771 184020849 + 184020829 184020869 41 CGCCGCTGCTTCTGGCCGGGCGCGGGTCGTGGTGCACCACG CGCCGCTGCTTCTGGCCGGGAGCGGGTCGTGGTGCACCACG Direct Loss 0.954060452016604 0 0.8855232 0 prediction 0.908120904033207 Functional Loss - TSEN15 ENSG00000198860 UTR5 Human protein_coding chr1:184020849 chr1:184020849 . . 0 21 hm5C_associated_SNPs_49210 0 0 1 0 0 Ribosome 0.500231645123246 0 0.7710464 0.000463290246491832 hm5C_site_4530 DeepMRMD:0.7710464;iRNA_m5C:0.000463290246491832 4531 chr9 139840170 139840170 1 + C A UCEC 139840170 + 139840150 139840190 41 ACCGGGCCGAGGCCACCACACTGCATGTGGCTCCCCAGGGC ACCGGGCCGAGGCCACCACAATGCATGTGGCTCCCCAGGGC Direct Loss 0.954055565053166 0 0.2397613 0 prediction 0.908111130106332 Functional Loss - C8G ENSG00000176919 CDS Human protein_coding chr9:139840170 chr9:139840170 nonsynonymous SNV 0.052 0 21 hm5C_associated_SNPs_49211 0 0 1 0 2 exosome 0.500231643919633 0 0 0.000463287839266302 hm5C_site_4531 DeepMRMD:0;iRNA_m5C:0.000463287839266302 4532 chr8 17104777 17104777 1 + C G rs146098391 17104777 + 17104757 17104797 41 AGCTGGCTTTTTCCCCTGACCAAGAGCGCCTCCTCCTCCGC AGCTGGCTTTTTCCCCTGACGAAGAGCGCCTCCTCCTCCGC Direct Loss 0.954054005997179 0 0.9044572 0 prediction 0.908108011994359 Functional Loss - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17104777 chr8:17104777 synonymous SNV . 0 21 hm5C_associated_SNPs_49212 0 0 1 0 0 chromatin 0.500231643921092 0 0.8089144 0.000463287842184856 hm5C_site_4532 DeepMRMD:0.8089144;iRNA_m5C:0.000463287842184856 4533 chr11 107536580 107536580 1 + C T rs113400390 107536580 + 107536560 107536600 41 TGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA TGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA Direct Loss 0.954046449965268 0 0.9350183 0 prediction 0.908092899930535 Functional Loss - ELMOD1 ENSG00000110675 UTR3 Human protein_coding chr11:107536580 chr11:107536580 . . 0 21 hm5C_associated_SNPs_49213 0 0 0 0 0 exosome 0.500231643921092 0 0.8700366 0.000463287842184856 hm5C_site_4533 DeepMRMD:0.8700366;iRNA_m5C:0.000463287842184856 4534 chr15 65134149 65134149 1 + C G rs187639034 65134149 + 65134129 65134169 41 GCCGCCTGGCCGGGCGTAGACGCGGTGGCAGAGCCCGCGCG GCCGCCTGGCCGGGCGTAGAGGCGGTGGCAGAGCCCGCGCG Direct Loss 0.954044516633369 0 0.91390437 0 prediction 0.908089033266738 Functional Loss - PLEKHO2 ENSG00000241839;ENSG00000249240 UTR5 Human other chr15:65134149 chr15:65134149 . . 0 21 hm5C_associated_SNPs_49214 0 0 1 0 1 chromatin 0.500231643921092 0 0.82780874 0.000463287842184634 hm5C_site_4534 DeepMRMD:0.82780874;iRNA_m5C:0.000463287842184634 4535 chrX 78010707 78010707 1 + C G HNSC 78010707 + 78010687 78010727 41 TGACACCCTCTGCAAGATCTCTGGAACTGCATTCCTTACCA TGACACCCTCTGCAAGATCTGTGGAACTGCATTCCTTACCA Direct Loss 0.954044127124525 0 0.2703514 0 prediction 0.908088254249051 Functional Loss - LPAR4 ENSG00000147145 CDS Human protein_coding chrX:78010707 chrX:78010707 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_49215 0 0 0 0 0 exosome 0.500231643581367 0 0 0.00046328716273436 hm5C_site_4535 DeepMRMD:0;iRNA_m5C:0.00046328716273436 4536 chr5 54405888 54405888 1 + C T UCEC 54405888 + 54405868 54405908 41 TGTTGTGCGAGGGTGTTTTCCGAGGGGTCACTTCCTTTGGC TGTTGTGCGAGGGTGTTTTCTGAGGGGTCACTTCCTTTGGC Direct Loss 0.954037793604024 0 0.95930207 0 prediction 0.908075587208048 Functional Loss - GZMA ENSG00000145649 CDS Human protein_coding chr5:54405888 chr5:54405888 stopgain 0.015 0 21 hm5C_associated_SNPs_49216 0 0 0 0 1 exosome 0.500231643921081 0 0.91860414 0.000463287842161542 hm5C_site_4536 DeepMRMD:0.91860414;iRNA_m5C:0.000463287842161542 4537 chr7 134632364 134632364 1 + C T UCEC 134632364 + 134632344 134632384 41 CGTCGTCGTCGCGGGGAGACCGAGAGCGAAGAGTTCGAGAA CGTCGTCGTCGCGGGGAGACTGAGAGCGAAGAGTTCGAGAA Direct Loss 0.954021271141794 0 0.8759097 0 prediction 0.908042542283588 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134632364 chr7:134632364 synonymous SNV . 0 21 hm5C_associated_SNPs_49217 0 0 1 0 0 Ribosome 0.500231643920352 0 0.7518194 0.000463287840703153 hm5C_site_4537 DeepMRMD:0.7518194;iRNA_m5C:0.000463287840703153 4538 chr17 61772050 61772050 1 + C G rs15637 61772050 + 61772030 61772070 41 GGGGAGATGGACGACACGGTCGGGGCATCTGGCCTGGCCAG GGGGAGATGGACGACACGGTGGGGGCATCTGGCCTGGCCAG Direct Loss 0.954020872181423 0 0.9357115 0 prediction 0.908041744362846 Functional Loss - MAP3K3 ENSG00000198909 UTR3 Human protein_coding chr17:61772050 chr17:61772050 . . 0 21 hm5C_associated_SNPs_49218 0 0 0 0 0 Cytosol 0.50023164301842 0 0.871423 0.000463286036839872 hm5C_site_4538 DeepMRMD:0.871423;iRNA_m5C:0.000463286036839872 4539 chr8 22438966 22438966 1 + C T UCEC 22438966 + 22438946 22438986 41 GTGGCCATCAACGGGGAAAGCGCGGAGGGCATGCTGCATGC GTGGCCATCAACGGGGAAAGTGCGGAGGGCATGCTGCATGC Direct Loss 0.954016883062022 0 0.90171516 0 prediction 0.908033766124045 Functional Loss - PDLIM2 ENSG00000120913 CDS Human protein_coding chr8:22438966 chr8:22438966 synonymous SNV . 0 21 hm5C_associated_SNPs_49219 0 0 1 0 2 Nucleus 0.500231643920133 0 0.80343032 0.000463287840265947 hm5C_site_4539 DeepMRMD:0.80343032;iRNA_m5C:0.000463287840265947 4540 chr1 248059583 248059583 1 + C T LUSC 248059583 + 248059563 248059603 41 GTTACAAATTCGGTCAGCATCAGGAAGGCAGAAGGCCTTCG GTTACAAATTCGGTCAGCATTAGGAAGGCAGAAGGCCTTCG Direct Loss 0.954012409766083 0 0.89620805 0 prediction 0.908024819532166 Functional Loss - OR2W3 ENSG00000238243 CDS Human protein_coding chr1:248059583 chr1:248059583 nonsynonymous SNV 0.038 1 21 hm5C_associated_SNPs_49220 0 0 0 0 0 exosome 0.500231645156841 0 0.7924161 0.000463290313682974 hm5C_site_4540 DeepMRMD:0.7924161;iRNA_m5C:0.000463290313682974 4541 chr10 35897248 35897248 1 + C T CESC 35897248 + 35897228 35897268 41 CCGGCGCCCCCGGGTGCACGCGCCGGAGGGGAGGGGGCTGG CCGGCGCCCCCGGGTGCACGTGCCGGAGGGGAGGGGGCTGG Direct Loss 0.954012007668716 0 0.8343874 0 prediction 0.908024015337431 Functional Loss - GJD4 ENSG00000177291 CDS Human protein_coding chr10:35897248 chr10:35897248 synonymous SNV . 0 21 hm5C_associated_SNPs_49221 0 0 0 0 0 exosome 0.500231643921272 0 0.6687748 0.000463287842544791 hm5C_site_4541 DeepMRMD:0.6687748;iRNA_m5C:0.000463287842544791 4542 chr10 81372171 81372171 1 + C T UCEC 81372171 + 81372151 81372191 41 GGAGAGAAGGGGGAGCCTGGCGAGAGGGGCCCTCCAGGTGA GGAGAGAAGGGGGAGCCTGGTGAGAGGGGCCCTCCAGGTGA Direct Loss 0.95400911337728 0 0.8983475 0 prediction 0.90801822675456 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81372171 chr10:81372171 synonymous SNV . 0 21 hm5C_associated_SNPs_49222 0 0 0 0 2 unknown 0.500231643120965 0 0.796695 0.000463286241930039 hm5C_site_4542 DeepMRMD:0.796695;iRNA_m5C:0.000463286241930039 4543 chr17 59533881 59533881 1 + C T CESC 59533881 + 59533861 59533901 41 GATAAGGGCCTGTCCGAGAGCGAGGAGGCCTTCCGGGCCCC GATAAGGGCCTGTCCGAGAGTGAGGAGGCCTTCCGGGCCCC Direct Loss 0.954004727344195 0 0.89843714 0 prediction 0.908009454688391 Functional Loss - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59533881 chr17:59533881 synonymous SNV . 0 21 hm5C_associated_SNPs_49223 0 0 0 0 1 exosome 0.500231643921092 0 0.79687428 0.000463287842184856 hm5C_site_4543 DeepMRMD:0.79687428;iRNA_m5C:0.000463287842184856 4544 chr21 36156950 36156950 1 + C T rs573428779 36156950 + 36156930 36156970 41 AGGCTGAGGCGGGCAGATCACGAGGTCAGGAGTTCGAGACC AGGCTGAGGCGGGCAGATCATGAGGTCAGGAGTTCGAGACC Direct Loss 0.954004023971981 0 0.9436396 0 prediction 0.908008047943962 Functional Loss - LINC01426 ENSG00000234380 ncRNA_exonic Human antisense chr21:36156950 chr21:36156950 . . 0 21 hm5C_associated_SNPs_49224 0 0 0 0 0 unknown 0.50023164619496 0 0.8872792 0.000463292389920822 hm5C_site_4544 DeepMRMD:0.8872792;iRNA_m5C:0.000463292389920822 4545 chr1 152733045 152733045 1 + C T SKCM 152733045 + 152733025 152733065 41 CGTGGCCCCAAGTGCCGAATCGAGATTTCCTCCCCGTGCTG CGTGGCCCCAAGTGCCGAATTGAGATTTCCTCCCCGTGCTG Direct Loss 0.954002576823282 0 0.8798816 0 prediction 0.908005153646564 Functional Loss - KPRP ENSG00000203786 CDS Human protein_coding chr1:152733045 chr1:152733045 synonymous SNV . 0 21 hm5C_associated_SNPs_49225 0 0 0 0 0 exosome 0.500231643918987 0 0.7597632 0.000463287837974669 hm5C_site_4545 DeepMRMD:0.7597632;iRNA_m5C:0.000463287837974669 4546 chr1 43316994 43316994 1 + C T COAD 43316994 + 43316974 43317014 41 TGAATGTGGCAAGAGCTTCTCGAGAAGCTCCAACCGCATCC TGAATGTGGCAAGAGCTTCTTGAGAAGCTCCAACCGCATCC Direct Loss 0.954001584238551 0 0.896824 0 prediction 0.908003168477103 Functional Loss - ZNF691 ENSG00000164011 CDS Human protein_coding chr1:43316994 chr1:43316994 nonsynonymous SNV 0.953 4 21 hm5C_associated_SNPs_49226 0 0 0 0 0 Cytosol 0.500231643926972 0 0.793648 0.000463287853943228 hm5C_site_4546 DeepMRMD:0.793648;iRNA_m5C:0.000463287853943228 4547 chr1 11887200 11887200 1 + C T LUSC 11887200 + 11887180 11887220 41 GCTGGAGTTGCTGCAGCTTTCGGGGCGCCAATCGGGGGTAC GCTGGAGTTGCTGCAGCTTTTGGGGCGCCAATCGGGGGTAC Direct Loss 0.95399788051194 0 0.93585443 0 prediction 0.907995761023881 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11887200 chr1:11887200 synonymous SNV . 0 21 hm5C_associated_SNPs_49227 0 0 1 0 3 Endoplasmic reticulum 0.500231654264793 0 0.87170886 0.000463308529585538 hm5C_site_4547 DeepMRMD:0.87170886;iRNA_m5C:0.000463308529585538 4548 chr13 114150069 114150069 1 + C T BLCA 114150069 + 114150049 114150089 41 GGACAGCTGCAGGAAGCTCTCAGGGCTTCTCCGCCAGAAGA GGACAGCTGCAGGAAGCTCTTAGGGCTTCTCCGCCAGAAGA Direct Loss 0.953989943515479 0 0.94861805 0 prediction 0.907979887030959 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114150069 chr13:114150069 nonsynonymous SNV 0.255 1 21 hm5C_associated_SNPs_49228 0 0 1 0 0 Ribosome 0.500231643933625 0 0.8972361 0.000463287867249695 hm5C_site_4548 DeepMRMD:0.8972361;iRNA_m5C:0.000463287867249695 4549 chr3 52457282 52457282 1 + C T rs145224435 52457282 + 52457262 52457302 41 CGTGGCAGGAGGAGCTACTCCTGGAGGTCCAAGGGTGTCAG CGTGGCAGGAGGAGCTACTCTTGGAGGTCCAAGGGTGTCAG Direct Loss 0.953988604414157 0 0.8871436 0 prediction 0.907977208828314 Functional Loss - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52457282 chr3:52457282 synonymous SNV . 0 21 hm5C_associated_SNPs_49229 0 0 0 0 0 cytosol 0.500231643921119 0 0.7742872 0.000463287842237703 hm5C_site_4549 DeepMRMD:0.7742872;iRNA_m5C:0.000463287842237703 4550 chr11 65123572 65123572 1 + C T CESC 65123572 + 65123552 65123592 41 GGCCAAGGCCTGGGACGTGACGGGGCCCATGCTGCTCCACA GGCCAAGGCCTGGGACGTGATGGGGCCCATGCTGCTCCACA Direct Loss 0.953974351916783 0 0.92336714 0 prediction 0.907948703833565 Functional Loss - TIGD3 ENSG00000173825 CDS Human protein_coding chr11:65123572 chr11:65123572 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_49230 0 0 1 0 0 Endoplasmic reticulum 0.500231640730552 0 0.84673428 0.000463281461104303 hm5C_site_4550 DeepMRMD:0.84673428;iRNA_m5C:0.000463281461104303 4551 chr12 117187926 117187926 1 + C T STAD 117187926 + 117187906 117187946 41 ATTTCCACCATGGCGGCCACCGCGGGGGCTCCCTGCTGCAG ATTTCCACCATGGCGGCCACTGCGGGGGCTCCCTGCTGCAG Direct Loss 0.953961034199001 0 0.93720084 0 prediction 0.907922068398002 Functional Loss - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117187926 chr12:117187926 nonsynonymous SNV 0.868 2 21 hm5C_associated_SNPs_49231 0 0 0 0 0 Ribosome 0.500231644036409 0 0.87440168 0.000463288072818147 hm5C_site_4551 DeepMRMD:0.87440168;iRNA_m5C:0.000463288072818147 4552 chr11 118184576 118184576 1 + C A rs2231447 118184576 + 118184556 118184596 41 ACACGAGGAGCGGGTGCTGGCGGCAGGCAAAGGGGTAAGGC ACACGAGGAGCGGGTGCTGGAGGCAGGCAAAGGGGTAAGGC Direct Loss 0.953959932704284 0 0.89337116 0 prediction 0.907919865408567 Functional Loss - CD3E ENSG00000198851 CDS Human protein_coding chr11:118184576 chr11:118184576 synonymous SNV . 0 21 hm5C_associated_SNPs_49232 0 0 0 0 1 exosome 0.500231643921092 0 0.78674232 0.000463287842184856 hm5C_site_4552 DeepMRMD:0.78674232;iRNA_m5C:0.000463287842184856 4553 chr8 38034195 38034195 1 + G A rs113937856 38034195 - 38034175 38034215 41 GGTCAGTGACTCTGGGGTCTCGGGAACCCGGAGACGAAGGA GGTCAGTGACTCTGGGGTCTTGGGAACCCGGAGACGAAGGA Direct Loss 0.953958449227558 0 0.9069984 0 prediction 0.907916898455116 Functional Loss - BAG4;LSM1 ENSG00000156735;ENSG00000175324 UTR5 Human other chr8:38034195 chr8:38034195 . . 0 21 hm5C_associated_SNPs_49233 0 0 1 0 0 unknown 0.500231643803324 0 0.8139968 0.000463287606647267 hm5C_site_4553 DeepMRMD:0.8139968;iRNA_m5C:0.000463287606647267 4554 chr2 220098072 220098072 1 + C T SKCM 220098072 + 220098052 220098092 41 GGGCCAAGCGGGGCACAGCCCAGGGGCTTCGGGATGCCCGA GGGCCAAGCGGGGCACAGCCTAGGGGCTTCGGGATGCCCGA Direct Loss 0.953954795275855 0 0.9208814 0 prediction 0.907909590551709 Functional Loss - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220098072 chr2:220098072 stopgain 0.998 1 21 hm5C_associated_SNPs_49234 0 0 1 0 2 chromatin 0.500231643921092 0 0.8417628 0.000463287842184856 hm5C_site_4554 DeepMRMD:0.8417628;iRNA_m5C:0.000463287842184856 4555 chr2 232458633 232458633 1 + C T CESC 232458633 + 232458613 232458653 41 GGCAGACCTGCTGCACAGCTCGGGGCCCAGCTTGCGCTCGG GGCAGACCTGCTGCACAGCTTGGGGCCCAGCTTGCGCTCGG Direct Loss 0.953952118875614 0 0.9432806 0 prediction 0.907904237751227 Functional Loss - TEX44 ENSG00000177673 CDS Human protein_coding chr2:232458633 chr2:232458633 nonsynonymous SNV 0.055 0 21 hm5C_associated_SNPs_49235 0 0 0 0 0 unknown 0.500231643921093 0 0.8865612 0.000463287842185078 hm5C_site_4555 DeepMRMD:0.8865612;iRNA_m5C:0.000463287842185078 4556 chr20 61431347 61431347 1 + C T rs569739887 61431347 + 61431327 61431367 41 GCATTTGGGATCCAGGCTACCTAGAGGGGCATCGGGCCAGG GCATTTGGGATCCAGGCTACTTAGAGGGGCATCGGGCCAGG Direct Loss 0.953951579808386 0 0.43681657 0 prediction 0.907903159616773 Functional Loss - MRGBP ENSG00000101189 UTR3 Human protein_coding chr20:61431347 chr20:61431347 . . 0 21 hm5C_associated_SNPs_49236 0 0 1 0 0 Ribosome 0.500231643915848 0 0 0.000463287831695913 hm5C_site_4556 DeepMRMD:0;iRNA_m5C:0.000463287831695913 4557 chr11 61544867 61544867 1 + C A LUAD 61544867 + 61544847 61544887 41 GATGAGGCGCTGGTTGTGCACGGGAATGTCAAGGTCATGGG GATGAGGCGCTGGTTGTGCAAGGGAATGTCAAGGTCATGGG Direct Loss 0.953937609912043 0 0.55203396 0 prediction 0.907875219824085 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61544867 chr11:61544867 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_49237 0 0 1 0 1 chromatin 0.50023167677481 0 0.10406792 0.000463353549620349 hm5C_site_4557 DeepMRMD:0.10406792;iRNA_m5C:0.000463353549620349 4558 chrX 152914879 152914879 1 + C T UCEC 152914879 + 152914859 152914899 41 CATGAGCTGTGGCCTGGATTCGGAGGGTGCCACACCCCCAC CATGAGCTGTGGCCTGGATTTGGAGGGTGCCACACCCCCAC Direct Loss 0.953923456538715 0 0.9700316 0 prediction 0.90784691307743 Functional Loss - DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152914879 chrX:152914879 nonsynonymous SNV 0.787 2 21 hm5C_associated_SNPs_49238 0 0 1 0 0 cytosol 0.500231643917379 0 0.9400632 0.000463287834758574 hm5C_site_4558 DeepMRMD:0.9400632;iRNA_m5C:0.000463287834758574 4559 chr19 42582913 42582913 1 + C T SKCM 42582913 + 42582893 42582933 41 GCTGGTGGGCGTGGCTGATCCCGGAGTCACTGTGGCCACAG GCTGGTGGGCGTGGCTGATCTCGGAGTCACTGTGGCCACAG Direct Loss 0.953918922799961 0 0.9392347 0 prediction 0.907837845599923 Functional Loss - ZNF574 ENSG00000105732 CDS Human protein_coding chr19:42582913 chr19:42582913 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_49239 0 0 1 0 0 Cytosol 0.500231643899202 0 0.8784694 0.000463287798404988 hm5C_site_4559 DeepMRMD:0.8784694;iRNA_m5C:0.000463287798404988 4560 chr11 64137784 64137784 1 + C T PRAD 64137784 + 64137764 64137804 41 CCGAGATCATGTGCAAAATCCGCGAGGGGCGCTTCTCCCTT CCGAGATCATGTGCAAAATCTGCGAGGGGCGCTTCTCCCTT Direct Loss 0.953911697361212 0 0.859695 0 prediction 0.907823394722424 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137784 chr11:64137784 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_49240 0 0 0 0 3 chromatin 0.500231643921093 0 0.71939 0.0004632878421853 hm5C_site_4560 DeepMRMD:0.71939;iRNA_m5C:0.0004632878421853 4561 chr19 54606438 54606438 1 + C A CESC 54606438 + 54606418 54606458 41 TCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGACAAGGA TCAGGAGTCGGCGCCTTCCTAAAGAATGCCTGGGACAAGGA Direct Loss 0.953900734049029 0 0.8774168 0 prediction 0.907801468098058 Functional Loss - NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606438 chr19:54606438 nonsynonymous SNV 0.964 0 21 hm5C_associated_SNPs_49241 0 0 1 0 2 Ribosome 0.500231643923406 0 0.7548336 0.000463287846812044 hm5C_site_4561 DeepMRMD:0.7548336;iRNA_m5C:0.000463287846812044 4562 chr12 9219147 9219147 1 + C T rs138746182 9219147 + 9219127 9219167 41 GTCTCAATCTCCCTTGGATCCGGGATCCAGGTTGGTAGCAA GTCTCAATCTCCCTTGGATCTGGGATCCAGGTTGGTAGCAA Direct Loss 0.953890444466468 0 0.89448893 0 prediction 0.907780888932936 Functional Loss - A2M-AS1 ENSG00000245105 ncRNA_exonic Human antisense chr12:9219147 chr12:9219147 . . 0 21 hm5C_associated_SNPs_49242 0 0 0 1 0 unknown 0.500231643921092 0 0.78897786 0.000463287842184856 hm5C_site_4562 DeepMRMD:0.78897786;iRNA_m5C:0.000463287842184856 4563 chr17 4859297 4859297 1 + C T SKCM 4859297 + 4859277 4859317 41 CACTTGGACCTCCTTCCTCTCGGGGGTGAACATCCAGATTG CACTTGGACCTCCTTCCTCTTGGGGGTGAACATCCAGATTG Direct Loss 0.953886179002386 0 0.9634296 0 prediction 0.907772358004772 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859297 chr17:4859297 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_49243 0 0 1 0 2 nucleus 0.500235698242233 0 0.9268592 0.000471396484466258 hm5C_site_4563 DeepMRMD:0.9268592;iRNA_m5C:0.000471396484466258 4564 chr5 21459805 21459805 1 + C T BLCA 21459805 + 21459785 21459825 41 AGTGACAGGCTCAGACGCATCGGGACCGGACCCGCAGCTTG AGTGACAGGCTCAGACGCATTGGGACCGGACCCGCAGCTTG Direct Loss 0.953874921045537 0 0.87718797 0 prediction 0.907749842091074 Functional Loss - GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21459805 chr5:21459805 . . 0 21 hm5C_associated_SNPs_49244 0 0 0 0 2 unknown 0.500231643921092 0 0.75437594 0.000463287842184856 hm5C_site_4564 DeepMRMD:0.75437594;iRNA_m5C:0.000463287842184856 4565 chr7 73474279 73474279 1 + C T KIRP 73474279 + 73474259 73474299 41 TCCTGGTGTCGGTGTGGCTCCTGGAGTTGGCTTGGCTCCTG TCCTGGTGTCGGTGTGGCTCTTGGAGTTGGCTTGGCTCCTG Direct Loss 0.953874785645196 0 0.87476796 0 prediction 0.907749571290393 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73474279 chr7:73474279 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_49245 0 0 0 0 3 exosome 0.500231643921084 0 0.74953592 0.000463287842168869 hm5C_site_4565 DeepMRMD:0.74953592;iRNA_m5C:0.000463287842168869 4566 chrX 30739014 30739014 1 + C T CESC 30739014 + 30738994 30739034 41 TGCACTGGGTGCGGCTATGGCGGCAGGGGCTGCAGAAGGAG TGCACTGGGTGCGGCTATGGTGGCAGGGGCTGCAGAAGGAG Direct Loss 0.953866918841368 0 0.4999799 0 prediction 0.907733837682735 Functional Loss - GK ENSG00000198814 CDS Human protein_coding chrX:30739014 chrX:30739014 nonsynonymous SNV 0.972 3 21 hm5C_associated_SNPs_49246 0 0 1 0 1 chromatin 0.500231643902502 0 0 0.000463287805004819 hm5C_site_4566 DeepMRMD:0;iRNA_m5C:0.000463287805004819 4567 chr13 77566266 77566266 1 + C G LUSC 77566266 + 77566246 77566286 41 GTAGACACGGCACAGGGCGCCGAGATGCGGCGGGGCGCGGG GTAGACACGGCACAGGGCGCGGAGATGCGGCGGGGCGCGGG Direct Loss 0.953861018646713 0 0.70074016 0 prediction 0.907722037293425 Functional Loss - CLN5 ENSG00000102805 CDS Human protein_coding chr13:77566266 chr13:77566266 synonymous SNV . 0 21 hm5C_associated_SNPs_49247 0 0 0 0 0 Endoplasmic reticulum 0.500231732241636 0 0.40148032 0.000463464483272169 hm5C_site_4567 DeepMRMD:0.40148032;iRNA_m5C:0.000463464483272169 4568 chr21 47548853 47548853 1 + C G rs115833459 47548853 + 47548833 47548873 41 TTTGTGCTGAAAGGTTTTCTCGGGGTCCGTGGTGTCCCCCA TTTGTGCTGAAAGGTTTTCTGGGGGTCCGTGGTGTCCCCCA Direct Loss 0.953849748569896 0 0.9542763 0 prediction 0.907699497139792 Functional Loss - COL6A2 ENSG00000142173 UTR3 Human protein_coding chr21:47548853 chr21:47548853 . . 0 21 hm5C_associated_SNPs_49248 0 0 0 0 1 Cytosol 0.500231643921092 0 0.9085526 0.000463287842184856 hm5C_site_4568 DeepMRMD:0.9085526;iRNA_m5C:0.000463287842184856 4569 chr1 161495216 161495216 1 + C T COAD 161495216 + 161495196 161495236 41 AAGCATGGGAAGGACCTGAGCGGGAACAAGCGTGCCCTGCG AAGCATGGGAAGGACCTGAGTGGGAACAAGCGTGCCCTGCG Direct Loss 0.953847880658683 0 0.8852727 0 prediction 0.907695761317367 Functional Loss - HSPA6 ENSG00000173110 CDS Human protein_coding chr1:161495216 chr1:161495216 synonymous SNV . 0 21 hm5C_associated_SNPs_49249 0 0 0 0 0 exosome 0.500231644043234 0 0.7705454 0.000463288086467895 hm5C_site_4569 DeepMRMD:0.7705454;iRNA_m5C:0.000463288086467895 4570 chr7 133868553 133868553 1 + C T CESC 133868553 + 133868533 133868573 41 GTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTC GTCCTGAAGCTTGTGGGAAATGAGAGCTTGCCCATCGCCTC Direct Loss 0.953842698685126 0 0.52067006 0 prediction 0.907685397370252 Functional Loss - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133868553 chr7:133868553 stopgain 0.996 1 21 hm5C_associated_SNPs_49250 0 0 0 0 2 cytosol 0.500231643935384 0 0.0413401200000001 0.000463287870767104 hm5C_site_4570 DeepMRMD:0.0413401200000001;iRNA_m5C:0.000463287870767104 4571 chr10 45499408 45499408 1 + C T UCEC 45499408 + 45499388 45499428 41 AAGAGAAGCCTCGTAAAACCCGGGGCAAAAATATCAGGGTG AAGAGAAGCCTCGTAAAACCTGGGGCAAAAATATCAGGGTG Direct Loss 0.953834841887784 0 0.96324635 0 prediction 0.907669683775568 Functional Loss - ZNF22 ENSG00000165512 CDS Human protein_coding chr10:45499408 chr10:45499408 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_49251 0 0 0 0 0 exosome 0.500231643921092 0 0.9264927 0.000463287842184856 hm5C_site_4571 DeepMRMD:0.9264927;iRNA_m5C:0.000463287842184856 4572 chr2 110373255 110373255 1 + C A UCEC 110373255 + 110373235 110373275 41 TCAAGAACCTGGTGGGAGCCCTGGACGAGGGTGACGGGGAA TCAAGAACCTGGTGGGAGCCATGGACGAGGGTGACGGGGAA Direct Loss 0.953832827625317 0 0.623413 0 prediction 0.907665655250635 Functional Loss - SOWAHC ENSG00000198142 CDS Human protein_coding chr2:110373255 chr2:110373255 nonsynonymous SNV 0.982 2 21 hm5C_associated_SNPs_49252 0 0 1 0 0 Ribosome 0.500231643921092 0 0.246826 0.000463287842184856 hm5C_site_4572 DeepMRMD:0.246826;iRNA_m5C:0.000463287842184856 4573 chr11 67177168 67177168 1 + C G HNSC 67177168 + 67177148 67177188 41 CGGGCCCGGGGCCCCCCCATCGAGGGGCCCCCCAGGCCCCA CGGGCCCGGGGCCCCCCCATGGAGGGGCCCCCCAGGCCCCA Direct Loss 0.953825660741117 0 0.95835185 0 prediction 0.907651321482233 Functional Loss - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67177168 chr11:67177168 nonsynonymous SNV 0.065 0 21 hm5C_associated_SNPs_49253 0 0 0 0 0 nucleus 0.500236289476435 0 0.9167037 0.000472578952870117 hm5C_site_4573 DeepMRMD:0.9167037;iRNA_m5C:0.000472578952870117 4574 chr1 35227147 35227147 1 + C T SKCM 35227147 + 35227127 35227167 41 TGGTCATGCACGTGGCCTACCGCGAGGAACGCGAGCGCAAG TGGTCATGCACGTGGCCTACTGCGAGGAACGCGAGCGCAAG Direct Loss 0.953816961543711 0 0.20366961 0 prediction 0.907633923087422 Functional Loss - GJB4 ENSG00000189433 CDS Human protein_coding chr1:35227147 chr1:35227147 nonsynonymous SNV 0.735 4 21 hm5C_associated_SNPs_49254 0 0 0 0 0 exosome 0.500232968834538 0 0 0.000465937669075434 hm5C_site_4574 DeepMRMD:0;iRNA_m5C:0.000465937669075434 4575 chr3 157155332 157155332 1 + C T BLCA 157155332 + 157155312 157155352 41 CGCCTGCGGTCAGGAGCACTCGGAATGGGACAAGCTCTTCA CGCCTGCGGTCAGGAGCACTTGGAATGGGACAAGCTCTTCA Direct Loss 0.953815448363762 0 0.9099455 0 prediction 0.907630896727525 Functional Loss - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157155332 chr3:157155332 nonsynonymous SNV 0.012 1 21 hm5C_associated_SNPs_49255 0 0 0 0 1 exosome 0.500231643921079 0 0.819891 0.000463287842158211 hm5C_site_4575 DeepMRMD:0.819891;iRNA_m5C:0.000463287842158211 4576 chr17 21904161 21904161 1 + C T BRCA 21904161 + 21904141 21904181 41 AGGAAACCACAGGCGGAGTCCGGGGGAAGCAGCGTGGCATC AGGAAACCACAGGCGGAGTCTGGGGGAAGCAGCGTGGCATC Direct Loss 0.953812246066701 0 0.9132762 0 prediction 0.907624492133401 Functional Loss - FLJ36000 ENSG00000266172 ncRNA_exonic Human other chr17:21904161 chr17:21904161 . . 0 21 hm5C_associated_SNPs_49256 0 0 0 0 1 unknown 0.500231631077147 0 0.8265524 0.000463262154294375 hm5C_site_4576 DeepMRMD:0.8265524;iRNA_m5C:0.000463262154294375 4577 chr2 37571883 37571883 1 + C A rs114110819 37571883 + 37571863 37571903 41 AGACTCGGAGAGATGGCAGGCGGAAGACACCGGCGCGTCGT AGACTCGGAGAGATGGCAGGAGGAAGACACCGGCGCGTCGT Direct Loss 0.953801939594206 0 0.89618075 0 prediction 0.907603879188412 Functional Loss - QPCT ENSG00000115828 CDS Human protein_coding chr2:37571883 chr2:37571883 synonymous SNV . 0 21 hm5C_associated_SNPs_49257 0 0 0 0 0 exosome 0.500231643920942 0 0.7923615 0.00046328784188443 hm5C_site_4577 DeepMRMD:0.7923615;iRNA_m5C:0.00046328784188443 4578 chr10 95372708 95372708 1 + C T SKCM 95372708 + 95372688 95372728 41 TGCAGGAGGAGGGGGGCACCCCAGAGCAGGGGGTTCACAGG TGCAGGAGGAGGGGGGCACCTCAGAGCAGGGGGTTCACAGG Direct Loss 0.953795721573164 0 0.8992952 0 prediction 0.907591443146328 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95372708 chr10:95372708 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49258 0 0 0 0 0 Nucleus 0.500231643437657 0 0.7985904 0.000463286875314273 hm5C_site_4578 DeepMRMD:0.7985904;iRNA_m5C:0.000463286875314273 4579 chr19 2877916 2877916 1 + C T STAD 2877916 + 2877896 2877936 41 CCCTATAAGTGTGGAAAATGCGGGAAAGCATTCGGTTGGCC CCCTATAAGTGTGGAAAATGTGGGAAAGCATTCGGTTGGCC Direct Loss 0.953794565189843 0 0.78244376 0 prediction 0.907589130379687 Functional Loss - ZNF556 ENSG00000172000 CDS Human protein_coding chr19:2877916 chr19:2877916 synonymous SNV . 0 21 hm5C_associated_SNPs_49259 0 0 1 0 0 exosome 0.500231643921092 0 0.56488752 0.000463287842184856 hm5C_site_4579 DeepMRMD:0.56488752;iRNA_m5C:0.000463287842184856 4580 chr14 76012817 76012817 1 + C T THCA 76012817 + 76012797 76012837 41 CCCTACAGGAGAGCGAAGACCTGGAGAAACAGAACGCGGCT CCCTACAGGAGAGCGAAGACTTGGAGAAACAGAACGCGGCT Direct Loss 0.953792764885885 0 0.55883694 0 prediction 0.90758552977177 Functional Loss - BATF ENSG00000156127 CDS Human protein_coding chr14:76012817 chr14:76012817 synonymous SNV . 0 21 hm5C_associated_SNPs_49260 0 0 0 0 1 exosome 0.500231627658107 0 0.11767388 0.000463255316214051 hm5C_site_4580 DeepMRMD:0.11767388;iRNA_m5C:0.000463255316214051 4581 chr5 140604458 140604458 1 + C A COAD 140604458 + 140604438 140604478 41 CCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCCCGCC CCTCCTACACCCTGTTCGTCAGCGAGAACAACAGCCCCGCC Direct Loss 0.953791731871875 0 0.1458556 0 prediction 0.907583463743751 Functional Loss - PCDHB14 ENSG00000120327 CDS Human protein_coding chr5:140604458 chr5:140604458 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_49261 0 0 0 0 0 exosome 0.500231643921082 0 0 0.00046328784216465 hm5C_site_4581 DeepMRMD:0;iRNA_m5C:0.00046328784216465 4582 chr16 19079057 19079057 1 + C T LUAD 19079057 + 19079037 19079077 41 GGGGGCCCGGCGGTCCCTCTCAGGTAAAAGGAGGCGCGCAG GGGGGCCCGGCGGTCCCTCTTAGGTAAAAGGAGGCGCGCAG Direct Loss 0.953759191216943 0 0.9233158 0 prediction 0.907518382433886 Functional Loss - COQ7 ENSG00000167186 CDS Human protein_coding chr16:19079057 chr16:19079057 nonsynonymous SNV 0.478 0 21 hm5C_associated_SNPs_49262 0 0 1 0 1 Ribosome 0.500231643921092 0 0.8466316 0.000463287842184856 hm5C_site_4582 DeepMRMD:0.8466316;iRNA_m5C:0.000463287842184856 4583 chr10 50818990 50818990 1 + C T COAD 50818990 + 50818970 50819010 41 GCCCACATGCGCGGGGGCGGCGAGGGCCCCACCCGGACTCC GCCCACATGCGCGGGGGCGGTGAGGGCCCCACCCGGACTCC Direct Loss 0.953750403285047 0 0.90873694 0 prediction 0.907500806570093 Functional Loss - SLC18A3 ENSG00000187714 CDS Human protein_coding chr10:50818990 chr10:50818990 synonymous SNV . 0 21 hm5C_associated_SNPs_49263 0 0 0 0 0 exosome 0.500231643921129 0 0.81747388 0.000463287842257909 hm5C_site_4583 DeepMRMD:0.81747388;iRNA_m5C:0.000463287842257909 4584 chr1 34662946 34662946 1 + C T rs368428091 34662946 + 34662926 34662966 41 TCTGGGGAGCTGGAGGTACCCGGCAGCTCTCCCGAGGGGAC TCTGGGGAGCTGGAGGTACCTGGCAGCTCTCCCGAGGGGAC Direct Loss 0.953737813097601 0 0.88381255 0 prediction 0.907475626195203 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34662946 chr1:34662946 synonymous SNV . 0 21 hm5C_associated_SNPs_49264 0 0 0 0 0 unknown 0.500231643921059 0 0.7676251 0.000463287842117133 hm5C_site_4584 DeepMRMD:0.7676251;iRNA_m5C:0.000463287842117133 4585 chr5 156738736 156738736 1 + C T STAD 156738736 + 156738716 156738756 41 GCGAGCAGATGGTTCAGATCCGGGATGACCACATCCGCTTC GCGAGCAGATGGTTCAGATCTGGGATGACCACATCCGCTTC Direct Loss 0.953737015181885 0 0.93277025 0 prediction 0.907474030363771 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156738736 chr5:156738736 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49265 0 0 1 0 2 Cytosol 0.500231328882483 0 0.8655405 0.000462657764966012 hm5C_site_4585 DeepMRMD:0.8655405;iRNA_m5C:0.000462657764966012 4586 chr2 54014410 54014410 1 + C T THCA 54014410 + 54014390 54014430 41 GGGCCGGTGTTACTGGTCCTCTGCGGCCTCCTGGAGGCGTC GGGCCGGTGTTACTGGTCCTTTGCGGCCTCCTGGAGGCGTC Direct Loss 0.953705562332953 0 0.4218989 0 prediction 0.907411124665906 Functional Loss - ERLEC1 ENSG00000068912 CDS Human protein_coding chr2:54014410 chr2:54014410 synonymous SNV . 0 21 hm5C_associated_SNPs_49266 0 0 1 0 1 Endoplasmic reticulum 0.500231643827798 0 0 0.000463287655596334 hm5C_site_4586 DeepMRMD:0;iRNA_m5C:0.000463287655596334 4587 chr14 19553664 19553664 1 + C T SKCM 19553664 + 19553644 19553684 41 CAAGAGCAACGTGGGCACTTCTGGAGACCACGACGACTCTG CAAGAGCAACGTGGGCACTTTTGGAGACCACGACGACTCTG Direct Loss 0.953669948692155 0 0.5894393 0 prediction 0.907339897384311 Functional Loss - POTEG ENSG00000222036 CDS Human protein_coding chr14:19553664 chr14:19553664 nonsynonymous SNV 0.011 3 21 hm5C_associated_SNPs_49267 0 0 0 0 0 exosome 0.500231643743402 0 0.1788786 0.000463287486804909 hm5C_site_4587 DeepMRMD:0.1788786;iRNA_m5C:0.000463287486804909 4588 chr1 65886400 65886400 1 + C T rs189950527 65886400 + 65886380 65886420 41 AAGCAGCCGCGGCCCCAGTTCGGGAGACATGGCGGGCGTTA AAGCAGCCGCGGCCCCAGTTTGGGAGACATGGCGGGCGTTA Direct Loss 0.953669920975001 0 0.9348383 0 prediction 0.907339841950003 Functional Loss - LEPR;LEPROT ENSG00000116678;ENSG00000213625 UTR5 Human other chr1:65886400 chr1:65886400 . . 0 21 hm5C_associated_SNPs_49268 2 0 1 0 1 unknown 0.500231643875071 0 0.8696766 0.000463287750141594 hm5C_site_4588 DeepMRMD:0.8696766;iRNA_m5C:0.000463287750141594 Monogenic Non-Syndromic Obesity Monogenic Non-Syndromic Obesity 4589 chr1 162531332 162531332 1 + C A rs182950062 162531332 + 162531312 162531352 41 CGCGTCGTCGTCTGTGCTCCCGGCGCTGACGTGTCTGGGCG CGCGTCGTCGTCTGTGCTCCAGGCGCTGACGTGTCTGGGCG Direct Loss 0.953640596935831 0 0.8862896 0 prediction 0.907281193871661 Functional Loss - UAP1 ENSG00000117143 UTR5 Human protein_coding chr1:162531332 chr1:162531332 . . 0 21 hm5C_associated_SNPs_49269 0 0 1 0 0 Ribosome 0.500230879059416 0 0.7725792 0.000461758118832201 hm5C_site_4589 DeepMRMD:0.7725792;iRNA_m5C:0.000461758118832201 4590 chr7 27192102 27192102 1 + C T rs181042387 27192102 + 27192082 27192122 41 GCCGCCAGGCCTGGCCTGGCCGGGGCTTCCCTTCGCTCGCC GCCGCCAGGCCTGGCCTGGCTGGGGCTTCCCTTCGCTCGCC Direct Loss 0.953639850618037 0 0.92401314 0 prediction 0.907279701236074 Functional Loss - HOXA-AS3 ENSG00000254369;ENSG00000272801;ENSG00000273433 ncRNA_exonic Human other chr7:27192102 chr7:27192102 . . 0 21 hm5C_associated_SNPs_49270 0 0 0 0 0 unknown 0.500231643920995 0 0.84802628 0.000463287841990789 hm5C_site_4590 DeepMRMD:0.84802628;iRNA_m5C:0.000463287841990789 4591 chr4 47427841 47427841 1 + C G LUAD 47427841 + 47427821 47427861 41 ACCGCAAGCCCCTGAGCAGCCGCGAGGCCTACGGGCGCGCC ACCGCAAGCCCCTGAGCAGCGGCGAGGCCTACGGGCGCGCC Direct Loss 0.953635072718736 0 0.3836948 0 prediction 0.907270145437473 Functional Loss - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47427841 chr4:47427841 nonsynonymous SNV 0.882 1 21 hm5C_associated_SNPs_49271 0 0 0 0 0 Cytosol 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4591 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4592 chr20 34021838 34021838 1 + C A LUSC 34021838 + 34021818 34021858 41 GCAGGTGGGTGGTGTGGACTCGGGGTCCATGGAGTTCATCA GCAGGTGGGTGGTGTGGACTAGGGGTCCATGGAGTTCATCA Direct Loss 0.953623123322989 0 0.91231346 0 prediction 0.907246246645979 Functional Loss - GDF5;GDF5OS ENSG00000125965 CDS Human protein_coding chr20:34021838 chr20:34021838 stopgain 0.995 1 21 hm5C_associated_SNPs_49272 0 0 0 0 0 unknown 0.500231643921238 0 0.82462692 0.000463287842476401 hm5C_site_4592 DeepMRMD:0.82462692;iRNA_m5C:0.000463287842476401 4593 chr19 52327145 52327145 1 + C A SKCM 52327145 + 52327125 52327165 41 CTGGGCAATGGGCTTGTGATCTGGGTGGCTGGATTCCGGAT CTGGGCAATGGGCTTGTGATATGGGTGGCTGGATTCCGGAT Direct Loss 0.95361304998535 0 0.89627343 0 prediction 0.907226099970699 Functional Loss - FPR3 ENSG00000187474 CDS Human protein_coding chr19:52327145 chr19:52327145 synonymous SNV . 0 21 hm5C_associated_SNPs_49273 0 0 0 0 0 cytosol 0.500231643933818 0 0.79254686 0.000463287867636275 hm5C_site_4593 DeepMRMD:0.79254686;iRNA_m5C:0.000463287867636275 4594 chr1 183212320 183212320 1 + C A rs587281 183212320 + 183212300 183212340 41 ATGAAGAGGGGCTGGTCTTACTGGAGCAGAAGCTTTCCCGA ATGAAGAGGGGCTGGTCTTAATGGAGCAGAAGCTTTCCCGA Direct Loss 0.953610164340115 0 0.79941 0 prediction 0.907220328680231 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183212320 chr1:183212320 nonsynonymous SNV 0.022 5 21 hm5C_associated_SNPs_49274 0 0 0 0 1 exosome 0.500231643904597 0 0.59882 0.000463287809193913 hm5C_site_4594 DeepMRMD:0.59882;iRNA_m5C:0.000463287809193913 4595 chr11 66299434 66299434 1 + C T UCEC 66299434 + 66299414 66299454 41 CTCCATAGGTGCTGGTGCTTCGAGAAGGCCAAAGTGCACCC CTCCATAGGTGCTGGTGCTTTGAGAAGGCCAAAGTGCACCC Direct Loss 0.953604703622475 0 0.8377579 0 prediction 0.907209407244949 Functional Loss - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66299434 chr11:66299434 stopgain 0.987 0 21 hm5C_associated_SNPs_49275 0 0 0 0 1 membrane 0.500231619052389 0 0.6755158 0.000463238104778219 hm5C_site_4595 DeepMRMD:0.6755158;iRNA_m5C:0.000463238104778219 4596 chr19 51920617 51920617 1 + C G rs75355870 51920617 + 51920597 51920637 41 TAGACCCTGTCCAGTCCTGTCGGGGGTAGGAGAAAGAGCAG TAGACCCTGTCCAGTCCTGTGGGGGGTAGGAGAAAGAGCAG Direct Loss 0.953601856037424 0 0.9199096 0 prediction 0.907203712074848 Functional Loss - SIGLEC10 ENSG00000142512 CDS Human protein_coding chr19:51920617 chr19:51920617 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49276 0 0 0 0 0 exosome 0.500231643809177 0 0.8398192 0.000463287618354569 hm5C_site_4596 DeepMRMD:0.8398192;iRNA_m5C:0.000463287618354569 4597 chr19 17392775 17392775 1 + C T rs566303446 17392775 + 17392755 17392795 41 GCAGGTTGCGGGATGCGCTGCGGGAGGAGGAGCCGTGGTGA GCAGGTTGCGGGATGCGCTGTGGGAGGAGGAGCCGTGGTGA Direct Loss 0.953600712116186 0 0.9035123 0 prediction 0.907201424232371 Functional Loss - ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392775 chr19:17392775 nonsynonymous SNV 0.467 0 21 hm5C_associated_SNPs_49277 0 0 0 0 1 chromatin 0.500231643757081 0 0.8070246 0.000463287514161026 hm5C_site_4597 DeepMRMD:0.8070246;iRNA_m5C:0.000463287514161026 4598 chr17 58227428 58227428 1 + C T DLBC 58227428 + 58227408 58227448 41 CTGGCGCTCCTGGCCCTCTCCGCGGCGCGGCCATCGGCCAG CTGGCGCTCCTGGCCCTCTCTGCGGCGCGGCCATCGGCCAG Direct Loss 0.9535919553266 0 0.90035385 0 prediction 0.907183910653201 Functional Loss - CA4 ENSG00000167434 CDS Human protein_coding chr17:58227428 chr17:58227428 synonymous SNV . 0 21 hm5C_associated_SNPs_49278 0 0 0 0 1 exosome 0.500231643921195 0 0.8007077 0.000463287842390248 hm5C_site_4598 DeepMRMD:0.8007077;iRNA_m5C:0.000463287842390248 4599 chr22 42394846 42394846 1 + C T BLCA 42394846 + 42394826 42394866 41 GCGGTGAATCAGAGCCACACCGAGAACCGCCGCGGAGCCCT GCGGTGAATCAGAGCCACACTGAGAACCGCCGCGGAGCCCT Direct Loss 0.953558548208327 0 0.44236308 0 prediction 0.907117096416654 Functional Loss - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42394846 chr22:42394846 synonymous SNV . 0 21 hm5C_associated_SNPs_49279 0 0 0 0 1 exosome 0.500231643911036 0 0 0.00046328782207139 hm5C_site_4599 DeepMRMD:0;iRNA_m5C:0.00046328782207139 4600 chr19 12783866 12783866 1 + C T COAD 12783866 + 12783846 12783886 41 GCCGGGATGGGCAGTGCACCCTGGTGTCCAGCCTGGACTCC GCCGGGATGGGCAGTGCACCTTGGTGTCCAGCCTGGACTCC Direct Loss 0.953551733240291 0 0.40774935 0 prediction 0.907103466480581 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12783866 chr19:12783866 synonymous SNV . 0 21 hm5C_associated_SNPs_49280 0 0 1 0 2 chromatin 0.500231688690939 0 0 0.000463377381878738 hm5C_site_4600 DeepMRMD:0;iRNA_m5C:0.000463377381878738 4601 chr14 35409476 35409476 1 + C T UCEC 35409476 + 35409456 35409496 41 AACAAACACTCTACAGAGTTCGGGAGTGGGATGACTGGAAG AACAAACACTCTACAGAGTTTGGGAGTGGGATGACTGGAAG Direct Loss 0.953547957780206 0 0.82618654 0 prediction 0.907095915560412 Functional Loss - IGBP1P1 ENSG00000226677 ncRNA_exonic Human processed_pseudogene chr14:35409476 chr14:35409476 . . 0 21 hm5C_associated_SNPs_49281 0 0 0 0 0 unknown 0.500231644624332 0 0.65237308 0.000463289248664234 hm5C_site_4601 DeepMRMD:0.65237308;iRNA_m5C:0.000463289248664234 4602 chr19 49206625 49206625 1 + C T rs1800022 49206625 + 49206605 49206645 41 ACTGGATGGAGGAGGAATACCGCCACATCCCGGGGGAGTAC ACTGGATGGAGGAGGAATACTGCCACATCCCGGGGGAGTAC Direct Loss 0.953535716529414 0 0.80132335 0 prediction 0.907071433058829 Functional Loss - FUT2 ENSG00000176920 CDS Human protein_coding chr19:49206625 chr19:49206625 nonsynonymous SNV 0.291 4 21 hm5C_associated_SNPs_49282 0 0 0 0 0 Nucleus 0.500231653999018 0 0.6026467 0.000463307998036289 hm5C_site_4602 DeepMRMD:0.6026467;iRNA_m5C:0.000463307998036289 4603 chr6 52268302 52268302 1 + C T BLCA 52268302 + 52268282 52268322 41 TTGCGATTCTGGGCCTTTGCCGAGGCTGAGGCCTTGCCATG TTGCGATTCTGGGCCTTTGCTGAGGCTGAGGCCTTGCCATG Direct Loss 0.953531786525286 0 0.93981034 0 prediction 0.907063573050571 Functional Loss - PAQR8 ENSG00000170915 CDS Human protein_coding chr6:52268302 chr6:52268302 synonymous SNV . 0 21 hm5C_associated_SNPs_49283 0 0 1 0 0 Ribosome 0.500231643921092 0 0.87962068 0.000463287842184856 hm5C_site_4603 DeepMRMD:0.87962068;iRNA_m5C:0.000463287842184856 4604 chr5 76249874 76249874 1 + C T SKCM 76249874 + 76249854 76249894 41 GGTGCCTGGACATGCTGAGCCTCCAGGGCCAGTTCACCTTC GGTGCCTGGACATGCTGAGCTTCCAGGGCCAGTTCACCTTC Direct Loss 0.95353018182845 0 0.9627571 0 prediction 0.907060363656901 Functional Loss - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249874 chr5:76249874 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_49284 0 0 0 0 0 Cytosol 0.500232029544479 0 0.9255142 0.000464059088958857 hm5C_site_4604 DeepMRMD:0.9255142;iRNA_m5C:0.000464059088958857 4605 chrX 118370491 118370491 1 + C T UCEC 118370491 + 118370471 118370511 41 GACCAGCCGGCGGCCAGCGGCGACAGCGACGACGACGAGCC GACCAGCCGGCGGCCAGCGGTGACAGCGACGACGACGAGCC Direct Loss 0.95352654818533 0 0.32303503 0 prediction 0.90705309637066 Functional Loss - PGRMC1 ENSG00000101856 CDS Human protein_coding chrX:118370491 chrX:118370491 synonymous SNV . 0 21 hm5C_associated_SNPs_49285 0 0 1 0 0 Ribosome 0.500231644338238 0 0 0.000463288676476603 hm5C_site_4605 DeepMRMD:0;iRNA_m5C:0.000463288676476603 4606 chr19 9271086 9271086 1 + C A OV 9271086 + 9271066 9271106 41 CCTTACGAGTGCAGCGACTGCGGGAAAGCCTTCAACGACCC CCTTACGAGTGCAGCGACTGAGGGAAAGCCTTCAACGACCC Direct Loss 0.953516928737299 0 0.8938693 0 prediction 0.907033857474597 Functional Loss - ZNF317 ENSG00000130803 CDS Human protein_coding chr19:9271086 chr19:9271086 stopgain 0.226 1 21 hm5C_associated_SNPs_49286 0 0 1 0 0 Nucleus 0.500231644666728 0 0.7877386 0.000463289333455741 hm5C_site_4606 DeepMRMD:0.7877386;iRNA_m5C:0.000463289333455741 4607 chr10 71849844 71849844 1 + C T rs114922371 71849844 + 71849824 71849864 41 CTAGAATTGGCCGGCAATGCCGCGAGGGACAACAAGAAGGC CTAGAATTGGCCGGCAATGCTGCGAGGGACAACAAGAAGGC Direct Loss 0.953511347293006 0 0.48365065 0 prediction 0.907022694586012 Functional Loss - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71849844 chr10:71849844 synonymous SNV . 0 21 hm5C_associated_SNPs_49287 0 0 1 0 2 Ribosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4607 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4608 chr14 101530900 101530900 1 + C T SKCM 101530900 + 101530880 101530920 41 ATGGGTGGTGGGCACAGAATCTGGACTCTGCTTGTGGCATC ATGGGTGGTGGGCACAGAATTTGGACTCTGCTTGTGGCATC Direct Loss 0.953498411852845 0 0.6503342 0 prediction 0.906996823705689 Functional Loss - MIR541 ENSG00000216179 ncRNA_exonic Human miRNA chr14:101530900 chr14:101530900 . . 0 21 hm5C_associated_SNPs_49288 0 0 0 0 0 unknown 0.50023164391912 0 0.3006684 0.0004632878382409 hm5C_site_4608 DeepMRMD:0.3006684;iRNA_m5C:0.0004632878382409 4609 chr4 109088926 109088926 1 + C G rs190386439 109088926 + 109088906 109088946 41 TCCGGAGAGTTGGGGCATCCCGGCGGCTCTGTAATCTCCGC TCCGGAGAGTTGGGGCATCCGGGCGGCTCTGTAATCTCCGC Direct Loss 0.953488757057567 0 0.8935393 0 prediction 0.906977514115133 Functional Loss - LEF1-AS1 ENSG00000232021 ncRNA_exonic Human processed_transcript chr4:109088926 chr4:109088926 . . 0 21 hm5C_associated_SNPs_49289 0 0 0 0 1 unknown 0.500232083663837 0 0.7870786 0.000464167327674181 hm5C_site_4609 DeepMRMD:0.7870786;iRNA_m5C:0.000464167327674181 4610 chrX 119293171 119293171 1 + C T UCEC 119293171 + 119293151 119293191 41 GTTGAGGACAGCGACCAGAGCGAGAAGGAACCTGGGCAGCA GTTGAGGACAGCGACCAGAGTGAGAAGGAACCTGGGCAGCA Direct Loss 0.953479430676645 0 0.775276 0 prediction 0.90695886135329 Functional Loss - RHOXF2;RHOXF2B ENSG00000131721 CDS Human protein_coding chrX:119293171 chrX:119293171 synonymous SNV . 0 21 hm5C_associated_SNPs_49290 0 0 0 0 0 unknown 0.500231634907039 0 0.550552 0.000463269814077627 hm5C_site_4610 DeepMRMD:0.550552;iRNA_m5C:0.000463269814077627 4611 chr19 38795511 38795511 1 + C A rs7248001 38795511 + 38795491 38795531 41 GCTGCTGGCTCCAAGCAGCACGAGAGCATCCCGGGCAAGGC GCTGCTGGCTCCAAGCAGCAAGAGAGCATCCCGGGCAAGGC Direct Loss 0.953477984613006 0 0.5494275 0 prediction 0.906955969226011 Functional Loss - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795511 chr19:38795511 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49291 0 0 0 0 1 Ribosome 0.500231643598595 0 0.0988549999999999 0.000463287197189022 hm5C_site_4611 DeepMRMD:0.0988549999999999;iRNA_m5C:0.000463287197189022 4612 chr22 43678065 43678065 1 + C G rs116484013 43678065 + 43678045 43678085 41 TGAAGGAGGCACCCAGGCATCGGGAGCAGCTGGACGGTCAA TGAAGGAGGCACCCAGGCATGGGGAGCAGCTGGACGGTCAA Direct Loss 0.953468459134234 0 0.8975698 0 prediction 0.906936918268467 Functional Loss - LOC101927447 ENSG00000203527 ncRNA_exonic Human antisense chr22:43678065 chr22:43678065 . . 0 21 hm5C_associated_SNPs_49292 0 0 0 0 0 unknown 0.500231643883555 0 0.7951396 0.000463287767109799 hm5C_site_4612 DeepMRMD:0.7951396;iRNA_m5C:0.000463287767109799 4613 chr1 227171527 227171527 1 + C T READ 227171527 + 227171507 227171547 41 CCCTGGAGTGTGACTACCAGCGAGAGGCCGCCTGTGCCCGC CCCTGGAGTGTGACTACCAGTGAGAGGCCGCCTGTGCCCGC Direct Loss 0.953464125918072 0 0.8869479 0 prediction 0.906928251836145 Functional Loss - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171527 chr1:227171527 stopgain 0.477 1 21 hm5C_associated_SNPs_49293 1 0 1 0 2 Nucleus 0.500231643921092 0 0.7738958 0.000463287842184856 hm5C_site_4613 DeepMRMD:0.7738958;iRNA_m5C:0.000463287842184856 not provided not provided 4614 chr8 86158082 86158082 1 + C T rs200216745 86158082 + 86158062 86158102 41 CGAGGCTCAGCTGGGGATACCGCGAGCACAACGGTGAGCGC CGAGGCTCAGCTGGGGATACTGCGAGCACAACGGTGAGCGC Direct Loss 0.953453897200275 0 0.6466016 0 prediction 0.906907794400549 Functional Loss - CA13 ENSG00000185015 CDS Human protein_coding chr8:86158082 chr8:86158082 nonsynonymous SNV 0.984 1 21 hm5C_associated_SNPs_49294 0 0 1 0 1 Cytosol 0.500228604078903 0 0.2932032 0.000457208157806255 hm5C_site_4614 DeepMRMD:0.2932032;iRNA_m5C:0.000457208157806255 4615 chr13 51825749 51825749 1 + C T ESCA 51825749 + 51825729 51825769 41 CTCCCGCTGTTCCGGGTGTCCGAGAGGCGGGCGTCCCGGCG CTCCCGCTGTTCCGGGTGTCTGAGAGGCGGGCGTCCCGGCG Direct Loss 0.95345138049618 0 0.9269651 0 prediction 0.90690276099236 Functional Loss - FAM124A ENSG00000150510 CDS Human protein_coding chr13:51825749 chr13:51825749 synonymous SNV . 0 21 hm5C_associated_SNPs_49295 0 0 0 0 0 exosome 0.500231660688841 0 0.8539302 0.000463321377682346 hm5C_site_4615 DeepMRMD:0.8539302;iRNA_m5C:0.000463321377682346 4616 chr3 51696597 51696597 1 + C T COAD 51696597 + 51696577 51696617 41 ATGCAGATGTGGCTGCTGCCCGGGAATCCCGTCAGAGCTCC ATGCAGATGTGGCTGCTGCCTGGGAATCCCGTCAGAGCTCC Direct Loss 0.95344973425494 0 0.55480826 0 prediction 0.90689946850988 Functional Loss - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51696597 chr3:51696597 nonsynonymous SNV 0.996 3 21 hm5C_associated_SNPs_49296 0 0 0 0 0 chromatin 0.500231643929575 0 0.10961652 0.000463287859150618 hm5C_site_4616 DeepMRMD:0.10961652;iRNA_m5C:0.000463287859150618 4617 chr19 41595962 41595962 1 + C T BRCA 41595962 + 41595942 41595982 41 ACCTCCCCAGGCGTGGCGTTCAGCAACGGGGAGCGCGCCAA ACCTCCCCAGGCGTGGCGTTTAGCAACGGGGAGCGCGCCAA Direct Loss 0.953446888758135 0 0.49880278 0 prediction 0.90689377751627 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41595962 chr19:41595962 synonymous SNV . 0 21 hm5C_associated_SNPs_49297 0 0 0 0 1 unknown 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4617 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4618 chr7 154862792 154862792 1 + G T LUSC 154862792 - 154862772 154862812 41 ACACGGAGGATGGTCGCCAGCACCAGCAGGTTCCAGGCGAA ACACGGAGGATGGTCGCCAGAACCAGCAGGTTCCAGGCGAA Direct Loss 0.95342722392926 0 0.30788267 0 prediction 0.906854447858519 Functional Loss - HTR5A ENSG00000157219;ENSG00000220575 CDS Human other chr7:154862792 chr7:154862792 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49298 0 0 0 0 1 exosome 0.500231622432921 0 0 0.000463244865841705 hm5C_site_4618 DeepMRMD:0;iRNA_m5C:0.000463244865841705 4619 chr22 21998365 21998365 1 + C T GBM 21998365 + 21998345 21998385 41 CGTGGGCAGCATGAGGTCCACGGCATGCCCAGTGCCAACAC CGTGGGCAGCATGAGGTCCATGGCATGCCCAGTGCCAACAC Direct Loss 0.953423624975567 0 0.40203673 0 prediction 0.906847249951133 Functional Loss - SDF2L1 ENSG00000128228 CDS Human protein_coding chr22:21998365 chr22:21998365 synonymous SNV . 0 21 hm5C_associated_SNPs_49299 0 0 1 0 0 Endoplasmic reticulum 0.500231649821691 0 0 0.000463299643381099 hm5C_site_4619 DeepMRMD:0;iRNA_m5C:0.000463299643381099 4620 chr2 114257061 114257061 1 + C T CESC 114257061 + 114257041 114257081 41 CCCCGAGAGCACATCGAGGGCGGCGGCCCGAGCGACCCCTC CCCCGAGAGCACATCGAGGGTGGCGGCCCGAGCGACCCCTC Direct Loss 0.953414292856029 0 0.9079008 0 prediction 0.906828585712057 Functional Loss - FOXD4L1 ENSG00000184492 CDS Human protein_coding chr2:114257061 chr2:114257061 synonymous SNV . 0 21 hm5C_associated_SNPs_49300 0 0 0 0 0 exosome 0.500231643920908 0 0.8158016 0.000463287841816262 hm5C_site_4620 DeepMRMD:0.8158016;iRNA_m5C:0.000463287841816262 4621 chr19 13910684 13910684 1 + C A UCEC 13910684 + 13910664 13910704 41 ATGCCCGGGTGCCCTTTACCCGCGGGCTGCACCTGCTCCAG ATGCCCGGGTGCCCTTTACCAGCGGGCTGCACCTGCTCCAG Direct Loss 0.953402187470621 0 0.9263706 0 prediction 0.906804374941242 Functional Loss - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13910684 chr19:13910684 nonsynonymous SNV 0.763 1 21 hm5C_associated_SNPs_49301 0 0 0 0 1 chromatin 0.500231643921092 0 0.8527412 0.000463287842184856 hm5C_site_4621 DeepMRMD:0.8527412;iRNA_m5C:0.000463287842184856 4622 chr1 109271412 109271412 1 + C T STAD 109271412 + 109271392 109271432 41 CAGGAGAGTCCTGCACCATGCGGGGCTTGCCCTGTGGCTCA CAGGAGAGTCCTGCACCATGTGGGGCTTGCCCTGTGGCTCA Direct Loss 0.953388008549684 0 0.93067414 0 prediction 0.906776017099368 Functional Loss - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109271412 chr1:109271412 nonsynonymous SNV 0.012 1 21 hm5C_associated_SNPs_49302 0 0 0 0 1 exosome 0.500231643921092 0 0.86134828 0.000463287842184856 hm5C_site_4622 DeepMRMD:0.86134828;iRNA_m5C:0.000463287842184856 4623 chr1 18808229 18808229 1 + C G rs115859684 18808229 + 18808209 18808249 41 TTGACCTGACCCTGCATCAGCAGGAGGGCGCCCCCAACTCC TTGACCTGACCCTGCATCAGGAGGAGGGCGCCCCCAACTCC Direct Loss 0.953361034365512 0 0.72626704 0 prediction 0.906722068731023 Functional Loss - KLHDC7A ENSG00000179023 CDS Human protein_coding chr1:18808229 chr1:18808229 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_49303 0 0 0 0 0 Cytosol 0.500231643921092 0 0.45253408 0.000463287842184856 hm5C_site_4623 DeepMRMD:0.45253408;iRNA_m5C:0.000463287842184856 Placental abruption 4624 chr5 140515200 140515200 1 + C T BLCA 140515200 + 140515180 140515220 41 GGGTGGGGGAACTGGCCACTCGGGGCGCGCGAATGCATTAC GGGTGGGGGAACTGGCCACTTGGGGCGCGCGAATGCATTAC Direct Loss 0.953352873310631 0 0.9087126 0 prediction 0.906705746621262 Functional Loss - PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140515200 chr5:140515200 nonsynonymous SNV 0.346 3 21 hm5C_associated_SNPs_49304 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8174252 0.000463287842184856 hm5C_site_4624 DeepMRMD:0.8174252;iRNA_m5C:0.000463287842184856 4625 chr16 88926359 88926359 1 + C A THCA 88926359 + 88926339 88926379 41 GTGCAACCCCTTCTACAACCCGGGGGACCGCATCCAGTCCA GTGCAACCCCTTCTACAACCAGGGGGACCGCATCCAGTCCA Direct Loss 0.953349773723957 0 0.9152378 0 prediction 0.906699547447914 Functional Loss - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926359 chr16:88926359 nonsynonymous SNV 0.945 5 21 hm5C_associated_SNPs_49305 0 0 1 0 2 Ribosome 0.50023164392109 0 0.8304756 0.000463287842180859 hm5C_site_4625 DeepMRMD:0.8304756;iRNA_m5C:0.000463287842180859 4626 chr14 20612052 20612052 1 + C A LUSC 20612052 + 20612032 20612072 41 TTTCACCATAAAGTCAGACCCTGGGCTCACAGCCCCCCTCT TTTCACCATAAAGTCAGACCATGGGCTCACAGCCCCCCTCT Direct Loss 0.953340711187042 0 0.72961485 0 prediction 0.906681422374084 Functional Loss - OR4N5 ENSG00000184394 CDS Human protein_coding chr14:20612052 chr14:20612052 nonsynonymous SNV 0.019 0 21 hm5C_associated_SNPs_49306 0 0 0 0 0 unknown 0.500234721773041 0 0.4592297 0.000469443546081916 hm5C_site_4626 DeepMRMD:0.4592297;iRNA_m5C:0.000469443546081916 4627 chr2 9614758 9614758 1 + C T rs571487863 9614758 + 9614738 9614778 41 TGGCCTCGCTTGTTGCTCTTCGGGGACTCCATCACCCAGGT TGGCCTCGCTTGTTGCTCTTTGGGGACTCCATCACCCAGGT Direct Loss 0.953339407975593 0 0.9419068 0 prediction 0.906678815951187 Functional Loss - IAH1 ENSG00000134330 CDS Human protein_coding chr2:9614758 chr2:9614758 synonymous SNV . 0 21 hm5C_associated_SNPs_49307 0 0 1 0 1 Ribosome 0.500231643942937 0 0.8838136 0.000463287885873687 hm5C_site_4627 DeepMRMD:0.8838136;iRNA_m5C:0.000463287885873687 4628 chr1 47610366 47610366 1 + C T PRAD 47610366 + 47610346 47610386 41 CCAAGCATCAGGAGAGGTGCCGGGAGGAGATCCATGGCCTC CCAAGCATCAGGAGAGGTGCTGGGAGGAGATCCATGGCCTC Direct Loss 0.953325116970185 0 0.69420075 0 prediction 0.90665023394037 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610366 chr1:47610366 nonsynonymous SNV 0.006 4 21 hm5C_associated_SNPs_49308 0 0 0 0 1 exosome 0.500231643986966 0 0.3884015 0.000463287973931914 hm5C_site_4628 DeepMRMD:0.3884015;iRNA_m5C:0.000463287973931914 4629 chr4 174292510 174292510 1 + C T SKCM 174292510 + 174292490 174292530 41 GCTGGGCCCCCGGGGGCGGCCGGGCCGGGCCCCGGGCAACT GCTGGGCCCCCGGGGGCGGCTGGGCCGGGCCCCGGGCAACT Direct Loss 0.953315348026505 0 0.88990283 0 prediction 0.906630696053011 Functional Loss - SAP30 ENSG00000164105 CDS Human protein_coding chr4:174292510 chr4:174292510 synonymous SNV . 0 21 hm5C_associated_SNPs_49309 0 0 1 0 0 Cytosol 0.500231643921093 0 0.77980566 0.000463287842185078 hm5C_site_4629 DeepMRMD:0.77980566;iRNA_m5C:0.000463287842185078 4630 chr8 18257916 18257916 1 + C G rs12720065 18257916 + 18257896 18257936 41 CCTCCCAGATGTGGCAGCCTCTAGAATTAATTTCTGGGAAG CCTCCCAGATGTGGCAGCCTGTAGAATTAATTTCTGGGAAG Direct Loss 0.95331019154447 0 0.35945922 0 prediction 0.90662038308894 Functional Loss - NAT2 ENSG00000156006 CDS Human protein_coding chr8:18257916 chr8:18257916 nonsynonymous SNV 0.641 0 21 hm5C_associated_SNPs_49310 0 0 0 0 0 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4630 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4631 chr16 66613524 66613524 1 + C T UCEC 66613524 + 66613504 66613544 41 GTCAGTCATGGCACCTAAGGCGGCAAAGGGGGCCAAGCCAG GTCAGTCATGGCACCTAAGGTGGCAAAGGGGGCCAAGCCAG Direct Loss 0.953308766805043 0 0.90128535 0 prediction 0.906617533610085 Functional Loss - CMTM2 ENSG00000140932 CDS Human protein_coding chr16:66613524 chr16:66613524 nonsynonymous SNV 0.002 2 21 hm5C_associated_SNPs_49311 0 0 0 0 0 nucleoplasm 0.500231643921084 0 0.8025707 0.000463287842167093 hm5C_site_4631 DeepMRMD:0.8025707;iRNA_m5C:0.000463287842167093 4632 chr20 31825902 31825902 1 + C A COAD 31825902 + 31825882 31825922 41 CTGGGGGCCTGTTGGGCATTCTGGAAAACCTTCCGCTCCTG CTGGGGGCCTGTTGGGCATTATGGAAAACCTTCCGCTCCTG Direct Loss 0.953297492377393 0 0.67712975 0 prediction 0.906594984754785 Functional Loss - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31825902 chr20:31825902 nonsynonymous SNV 0.858 3 21 hm5C_associated_SNPs_49312 0 0 0 0 1 unknown 0.500231642962477 0 0.3542595 0.00046328592495315 hm5C_site_4632 DeepMRMD:0.3542595;iRNA_m5C:0.00046328592495315 4633 chrX 102192458 102192458 1 + C T UCEC 102192458 + 102192438 102192478 41 GCTGAAGCTCTGGGATACGTCGGGGCAGGGAAGATTTTGTA GCTGAAGCTCTGGGATACGTTGGGGCAGGGAAGATTTTGTA Direct Loss 0.953296800265918 0 0.94063365 0 prediction 0.906593600531836 Functional Loss - RAB40AL ENSG00000102128 CDS Human protein_coding chrX:102192458 chrX:102192458 nonsynonymous SNV 0.976 2 21 hm5C_associated_SNPs_49313 0 0 0 0 0 exosome 0.500231643921089 0 0.8812673 0.000463287842178639 hm5C_site_4633 DeepMRMD:0.8812673;iRNA_m5C:0.000463287842178639 4634 chr1 177226391 177226391 1 + C T UCEC 177226391 + 177226371 177226411 41 ACAGGAGGTGCCTCTATAATCGGGGGCAGTGGGAACAGCAC ACAGGAGGTGCCTCTATAATTGGGGGCAGTGGGAACAGCAC Direct Loss 0.953296153592373 0 0.9632229 0 prediction 0.906592307184745 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177226391 chr1:177226391 synonymous SNV . 0 21 hm5C_associated_SNPs_49314 0 0 0 0 1 Nucleus 0.500231643919829 0 0.9264458 0.000463287839657545 hm5C_site_4634 DeepMRMD:0.9264458;iRNA_m5C:0.000463287839657545 4635 chr19 50979798 50979798 1 + C G rs201542780 50979798 + 50979778 50979818 41 CTTCGCTGGTGGGAAGAAGCCGAGATGGCGGCAGCCAGCGC CTTCGCTGGTGGGAAGAAGCGGAGATGGCGGCAGCCAGCGC Direct Loss 0.953295367005453 0 0.87793124 0 prediction 0.906590734010907 Functional Loss - EMC10;FAM71E1 ENSG00000142530;ENSG00000161671 UTR5 Human other chr19:50979798 chr19:50979798 . . 0 21 hm5C_associated_SNPs_49315 0 0 1 0 0 unknown 0.500231640984431 0 0.75586248 0.000463281968861695 hm5C_site_4635 DeepMRMD:0.75586248;iRNA_m5C:0.000463281968861695 4636 chr7 137802721 137802721 1 + C T rs536684636 137802721 + 137802701 137802741 41 CTTGCAGTGAGCCGAGATAGCGCCACTGCAGTCCGGCCTGG CTTGCAGTGAGCCGAGATAGTGCCACTGCAGTCCGGCCTGG Direct Loss 0.953287476252732 0 0.34715247 0 prediction 0.906574952505464 Functional Loss - AKR1D1 ENSG00000122787 UTR3 Human protein_coding chr7:137802721 chr7:137802721 . . 0 21 hm5C_associated_SNPs_49316 0 0 0 0 0 cytosol 0.500232339836733 0 0 0.000464679673465751 hm5C_site_4636 DeepMRMD:0;iRNA_m5C:0.000464679673465751 4637 chr20 57876505 57876505 1 + C T UCEC 57876505 + 57876485 57876525 41 TCTGGGGATGCTGGCAGGCGCGGCGTGTCCCAGGCCCCCAC TCTGGGGATGCTGGCAGGCGTGGCGTGTCCCAGGCCCCCAC Direct Loss 0.953287162182968 0 0.885536 0 prediction 0.906574324365936 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57876505 chr20:57876505 synonymous SNV . 0 21 hm5C_associated_SNPs_49317 0 0 0 0 1 exosome 0.50023164392109 0 0.771072 0.000463287842180193 hm5C_site_4637 DeepMRMD:0.771072;iRNA_m5C:0.000463287842180193 4638 chr19 2989188 2989188 1 + C T UCEC 2989188 + 2989168 2989208 41 GCACACGGGGAGCTCGTGCTCGCCACGGCCATCAGCAGCTT GCACACGGGGAGCTCGTGCTTGCCACGGCCATCAGCAGCTT Direct Loss 0.953284489562982 0 0.39802366 0 prediction 0.906568979125964 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2989188 chr19:2989188 synonymous SNV . 0 21 hm5C_associated_SNPs_49318 0 0 0 0 0 exosome 0.500231923114711 0 0 0.000463846229422638 hm5C_site_4638 DeepMRMD:0;iRNA_m5C:0.000463846229422638 4639 chr17 6683452 6683452 1 + C G LUAD 6683452 + 6683432 6683472 41 TTAAGAAGTTTGGTCGTTATCTGGAGCACCTGGAGGTCAAA TTAAGAAGTTTGGTCGTTATGTGGAGCACCTGGAGGTCAAA Direct Loss 0.953275326039402 0 0.89819527 0 prediction 0.906550652078805 Functional Loss - FBXO39 ENSG00000177294 CDS Human protein_coding chr17:6683452 chr17:6683452 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_49319 0 0 0 0 0 exosome 0.500231587427114 0 0.79639054 0.000463174854227422 hm5C_site_4639 DeepMRMD:0.79639054;iRNA_m5C:0.000463174854227422 4640 chr1 159175698 159175698 1 + C A HNSC 159175698 + 159175678 159175718 41 ATGCCTCCCTGGGCCACAGACTGGGTGCAGGCCAGGTCCCA ATGCCTCCCTGGGCCACAGAATGGGTGCAGGCCAGGTCCCA Direct Loss 0.953260487005726 0 0.84987485 0 prediction 0.906520974011452 Functional Loss - ACKR1 ENSG00000213088 CDS Human protein_coding chr1:159175698 chr1:159175698 nonsynonymous SNV 0.003 2 21 hm5C_associated_SNPs_49320 0 0 0 0 0 Endoplasmic reticulum 0.500231643921027 0 0.6997497 0.000463287842054738 hm5C_site_4640 DeepMRMD:0.6997497;iRNA_m5C:0.000463287842054738 4641 chr17 40706929 40706929 1 + C T rs149530547 40706929 + 40706909 40706949 41 GCGGTGGGGGACCCTGAGCTCGGCGATCCTCCGGCCGCCCC GCGGTGGGGGACCCTGAGCTTGGCGATCCTCCGGCCGCCCC Direct Loss 0.953252853660494 0 0.8773729 0 prediction 0.906505707320988 Functional Loss - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40706929 chr17:40706929 synonymous SNV . 0 21 hm5C_associated_SNPs_49321 0 0 0 0 0 chromatin 0.500231643972963 0 0.7547458 0.000463287945925428 hm5C_site_4641 DeepMRMD:0.7547458;iRNA_m5C:0.000463287945925428 4642 chrX 51075910 51075910 1 + C T UCEC 51075910 + 51075890 51075930 41 TTCCGGAGCGAGCGCGAGGACGAGGTCCTGTTAGTGAGTAG TTCCGGAGCGAGCGCGAGGATGAGGTCCTGTTAGTGAGTAG Direct Loss 0.95325102173963 0 0.83914906 0 prediction 0.906502043479261 Functional Loss - NUDT10 ENSG00000122824 CDS Human protein_coding chrX:51075910 chrX:51075910 synonymous SNV . 0 21 hm5C_associated_SNPs_49322 0 0 0 0 0 exosome 0.500231643921034 0 0.67829812 0.000463287842067617 hm5C_site_4642 DeepMRMD:0.67829812;iRNA_m5C:0.000463287842067617 4643 chr2 171572854 171572854 1 + C A UCEC 171572854 + 171572834 171572874 41 CTGTAGCCGCATCGGCCAGCCGGGCGCGGCGGCGCCCCCGG CTGTAGCCGCATCGGCCAGCAGGGCGCGGCGGCGCCCCCGG Direct Loss 0.953248538289639 0 0.8860187 0 prediction 0.906497076579277 Functional Loss - SP5 ENSG00000204335 CDS Human protein_coding chr2:171572854 chr2:171572854 nonsynonymous SNV 0.633 0 21 hm5C_associated_SNPs_49323 0 0 1 0 1 insoluble cytoplasm 0.500231643922157 0 0.7720374 0.000463287844314042 hm5C_site_4643 DeepMRMD:0.7720374;iRNA_m5C:0.000463287844314042 4644 chr14 96730739 96730739 1 + C T STAD 96730739 + 96730719 96730759 41 GAGGTCAGCAGGACAAGGTGCGGGGGCCGCAAGGATAGCAA GAGGTCAGCAGGACAAGGTGTGGGGGCCGCAAGGATAGCAA Direct Loss 0.953235805373502 0 0.90282655 0 prediction 0.906471610747004 Functional Loss - BDKRB1 ENSG00000100739 CDS Human protein_coding chr14:96730739 chr14:96730739 synonymous SNV . 0 21 hm5C_associated_SNPs_49324 0 0 0 0 0 nucleus 0.500231643921069 0 0.8056531 0.000463287842137339 hm5C_site_4644 DeepMRMD:0.8056531;iRNA_m5C:0.000463287842137339 4645 chr4 3251096 3251096 1 + C A rs147328965 3251096 + 3251076 3251116 41 GCCCGCAACTGGACGGACGCCGAGATGCGCGGCCTCATGCT GCCCGCAACTGGACGGACGCAGAGATGCGCGGCCTCATGCT Direct Loss 0.953232107167463 0 0.47762436 0 prediction 0.906464214334925 Functional Loss - MSANTD1 ENSG00000188981 CDS Human protein_coding chr4:3251096 chr4:3251096 synonymous SNV . 0 21 hm5C_associated_SNPs_49325 0 0 0 0 0 chromatin 0.500231585932906 0 0 0.000463171865812351 hm5C_site_4645 DeepMRMD:0;iRNA_m5C:0.000463171865812351 4646 chr19 37095814 37095814 1 + C A rs565969667 37095814 + 37095794 37095834 41 GTGCACACCCCCCGCCCCCCCGGGACCATCACAGGCGCGCC GTGCACACCCCCCGCCCCCCAGGGACCATCACAGGCGCGCC Direct Loss 0.953230796269568 0 0.53554296 0 prediction 0.906461592539137 Functional Loss - ZNF529 ENSG00000161298 UTR5 Human protein_coding chr19:37095814 chr19:37095814 . . 0 21 hm5C_associated_SNPs_49326 0 0 0 0 0 Nucleus 0.500231642824858 0 0.07108592 0.000463285649715983 hm5C_site_4646 DeepMRMD:0.07108592;iRNA_m5C:0.000463285649715983 4647 chr19 46195970 46195970 1 + C G STAD 46195970 + 46195950 46195990 41 GGCAAAGCGGCCATGCGTTCCGGGGGCCGCGGGCGACCCCG GGCAAAGCGGCCATGCGTTCGGGGGGCCGCGGGCGACCCCG Direct Loss 0.953211492569364 0 0.9344562 0 prediction 0.906422985138727 Functional Loss - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46195970 chr19:46195970 synonymous SNV . 0 21 hm5C_associated_SNPs_49327 0 0 1 0 0 chromatin 0.500231643924797 0 0.8689124 0.000463287849594929 hm5C_site_4647 DeepMRMD:0.8689124;iRNA_m5C:0.000463287849594929 4648 chrX 150869215 150869215 1 + C T COAD 150869215 + 150869195 150869235 41 TCCCCCGGGTCATGGTGTACCGGGGTACTGTGCATAGCCAA TCCCCCGGGTCATGGTGTACTGGGGTACTGTGCATAGCCAA Direct Loss 0.953181046379026 0 0.92047787 0 prediction 0.906362092758051 Functional Loss - PRRG3 ENSG00000130032 CDS Human protein_coding chrX:150869215 chrX:150869215 nonsynonymous SNV 0.942 5 21 hm5C_associated_SNPs_49328 0 0 0 0 0 exosome 0.50023164392291 0 0.84095574 0.000463287845820615 hm5C_site_4648 DeepMRMD:0.84095574;iRNA_m5C:0.000463287845820615 4649 chr11 111156491 111156491 1 + C T BLCA 111156491 + 111156471 111156511 41 TGCCTCTCCCAGCTTGAGTCCGGGAGCATCGCCCAGCACAG TGCCTCTCCCAGCTTGAGTCTGGGAGCATCGCCCAGCACAG Direct Loss 0.953175419960582 0 0.93383634 0 prediction 0.906350839921165 Functional Loss - C11orf53 ENSG00000150750 CDS Human protein_coding chr11:111156491 chr11:111156491 synonymous SNV . 0 21 hm5C_associated_SNPs_49329 0 0 0 0 0 Ribosome 0.500231634269579 0 0.86767268 0.000463268539157458 hm5C_site_4649 DeepMRMD:0.86767268;iRNA_m5C:0.000463268539157458 4650 chr18 47095827 47095827 1 + C T KIRC 47095827 + 47095807 47095847 41 GAGAAGGACGATTTTTCTCTCGGGAATGTCCACTTGATCGG GAGAAGGACGATTTTTCTCTTGGGAATGTCCACTTGATCGG Direct Loss 0.953175208528189 0 0.9126377 0 prediction 0.906350417056378 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47095827 chr18:47095827 synonymous SNV . 0 21 hm5C_associated_SNPs_49330 0 0 0 0 2 Nucleus 0.500231643966461 0 0.8252754 0.00046328793292183 hm5C_site_4650 DeepMRMD:0.8252754;iRNA_m5C:0.00046328793292183 4651 chr18 21083465 21083465 1 + C T rs558313002 21083465 + 21083445 21083485 41 GCACCAGGAAGCGGCGTCCGCGCCGGGCCCAGAGCCGCAGC GCACCAGGAAGCGGCGTCCGTGCCGGGCCCAGAGCCGCAGC Direct Loss 0.953174769844993 0 0.6124287 0 prediction 0.906349539689985 Functional Loss - C18orf8 ENSG00000141452 upstream Human protein_coding chr18:21083465 chr18:21083465 . . 0 21 hm5C_associated_SNPs_49331 0 0 0 0 0 Ribosome 0.500232332291291 0 0.2248574 0.000464664582582985 hm5C_site_4651 DeepMRMD:0.2248574;iRNA_m5C:0.000464664582582985 4652 chr17 7612694 7612694 1 + C T OV 7612694 + 7612674 7612714 41 CCTTCGGGAGGGGAGGGTCTCTGGGCCTGGGGGGTGGAGGT CCTTCGGGAGGGGAGGGTCTTTGGGCCTGGGGGGTGGAGGT Direct Loss 0.953159993111667 0 0.917333 0 prediction 0.906319986223335 Functional Loss - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7612694 chr17:7612694 synonymous SNV . 0 21 hm5C_associated_SNPs_49332 0 0 0 0 0 exosome 0.500231643921092 0 0.834666 0.000463287842184856 hm5C_site_4652 DeepMRMD:0.834666;iRNA_m5C:0.000463287842184856 4653 chr1 203276287 203276287 1 + C G DLBC 203276287 + 203276267 203276307 41 TCCAAGGGCTCCGGCTACCGCTGCATTCGCATCAACCACAA TCCAAGGGCTCCGGCTACCGGTGCATTCGCATCAACCACAA Direct Loss 0.953149356392262 0 0.16315198 0 prediction 0.906298712784523 Functional Loss - BTG2 ENSG00000159388 CDS Human protein_coding chr1:203276287 chr1:203276287 synonymous SNV . 0 21 hm5C_associated_SNPs_49333 0 0 1 0 1 exosome 0.500231643867206 0 0 0.000463287734411955 hm5C_site_4653 DeepMRMD:0;iRNA_m5C:0.000463287734411955 4654 chr10 94834685 94834685 1 + C T UCEC 94834685 + 94834665 94834705 41 AAGCGCCTCATGTTCCGAATCGCCATGCGCATCCTACTGGG AAGCGCCTCATGTTCCGAATTGCCATGCGCATCCTACTGGG Direct Loss 0.953148040083518 0 0.92935246 0 prediction 0.906296080167036 Functional Loss - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94834685 chr10:94834685 synonymous SNV . 0 21 hm5C_associated_SNPs_49334 0 0 0 0 0 Endoplasmic reticulum 0.500231650267422 0 0.85870492 0.000463300534844002 hm5C_site_4654 DeepMRMD:0.85870492;iRNA_m5C:0.000463300534844002 4655 chr13 113826319 113826319 1 + C T PAAD 113826319 + 113826299 113826339 41 CAGAGGCTCCTGGTTTCTCACGGGGGTCCTGGGCTCGCAGC CAGAGGCTCCTGGTTTCTCATGGGGGTCCTGGGCTCGCAGC Direct Loss 0.953143733030605 0 0.9542683 0 prediction 0.90628746606121 Functional Loss - PROZ ENSG00000126231 CDS Human protein_coding chr13:113826319 chr13:113826319 nonsynonymous SNV 0.781 3 21 hm5C_associated_SNPs_49335 0 0 0 0 0 exosome 0.500231643921092 0 0.9085366 0.000463287842184856 hm5C_site_4655 DeepMRMD:0.9085366;iRNA_m5C:0.000463287842184856 4656 chr1 236902695 236902695 1 + C T UCEC 236902695 + 236902675 236902715 41 AGAAGAAGCTGGAGGACTTCCGGGATTACCGCCGGAAGCAC AGAAGAAGCTGGAGGACTTCTGGGATTACCGCCGGAAGCAC Direct Loss 0.95314347673835 0 0.89189667 0 prediction 0.9062869534767 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236902695 chr1:236902695 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49336 1 0 0 0 1 chromatin 0.500231643921092 0 0.78379334 0.000463287842184856 hm5C_site_4656 DeepMRMD:0.78379334;iRNA_m5C:0.000463287842184856 not specified not specified 4657 chr3 128445096 128445096 1 + C T rs374777610 128445096 + 128445076 128445116 41 GGAGAGCTCGGGAGAGTTCCCTGGAACCAGAACTTGGACCT GGAGAGCTCGGGAGAGTTCCTTGGAACCAGAACTTGGACCT Direct Loss 0.953139938825357 0 0.9139247 0 prediction 0.906279877650713 Functional Loss - RAB7A ENSG00000075785 UTR5 Human protein_coding chr3:128445096 chr3:128445096 . . 0 21 hm5C_associated_SNPs_49337 1 0 1 0 0 Ribosome 0.500231643921091 0 0.8278494 0.000463287842182636 hm5C_site_4657 DeepMRMD:0.8278494;iRNA_m5C:0.000463287842182636 Charcot-Marie-Tooth, Type 2 Charcot-Marie-Tooth, Type 2 4658 chr6 134273404 134273404 1 + C T rs146710523 134273404 + 134273384 134273424 41 CCCCAGGGCGACGGTTCAAACGGGCCATTGTGCGCCCCCGG CCCCAGGGCGACGGTTCAAATGGGCCATTGTGCGCCCCCGG Direct Loss 0.953132741744722 0 0.93481827 0 prediction 0.906265483489444 Functional Loss - TBPL1 ENSG00000028839 UTR5 Human protein_coding chr6:134273404 chr6:134273404 . . 0 21 hm5C_associated_SNPs_49338 0 0 0 0 0 Ribosome 0.500231643921081 0 0.86963654 0.000463287842161986 hm5C_site_4658 DeepMRMD:0.86963654;iRNA_m5C:0.000463287842161986 4659 chr5 150158263 150158263 1 + C A rs372195838 150158263 + 150158243 150158283 41 ACGCTGGAGGAGGAGCTGAGCTGGAGTTGCCGGGGCCCCGG ACGCTGGAGGAGGAGCTGAGATGGAGTTGCCGGGGCCCCGG Direct Loss 0.953127502417778 0 0.9067054 0 prediction 0.906255004835556 Functional Loss - SMIM3 ENSG00000269636 CDS Human other chr5:150158263 chr5:150158263 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49339 0 0 0 0 0 chromatin 0.500231643921528 0 0.8134108 0.000463287843055937 hm5C_site_4659 DeepMRMD:0.8134108;iRNA_m5C:0.000463287843055937 4660 chr9 140510182 140510182 1 + G A COAD 140510182 - 140510162 140510202 41 CCTGGGCAAGCCCCTCCACGCGCCAGCGGGTTTCTCAGCAG CCTGGGCAAGCCCCTCCACGTGCCAGCGGGTTTCTCAGCAG Direct Loss 0.953122262667527 0 0.17018932 0 prediction 0.906244525335054 Functional Loss - ARRDC1-AS1 ENSG00000203993 CDS Human antisense chr9:140510182 chr9:140510182 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49340 0 0 1 0 0 unknown 0.500231643921165 0 0 0.00046328784233074 hm5C_site_4660 DeepMRMD:0;iRNA_m5C:0.00046328784233074 4661 chr13 88329590 88329590 1 + C T UCEC 88329590 + 88329570 88329610 41 TTGAATAGCACCGGGGCCCCCGCGAGCTTGGGCGCAGGCGG TTGAATAGCACCGGGGCCCCTGCGAGCTTGGGCGCAGGCGG Direct Loss 0.953120218934492 0 0.89928645 0 prediction 0.906240437868985 Functional Loss - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88329590 chr13:88329590 synonymous SNV . 0 21 hm5C_associated_SNPs_49341 0 0 0 0 0 nucleus 0.500231643835486 0 0.7985729 0.000463287670971146 hm5C_site_4661 DeepMRMD:0.7985729;iRNA_m5C:0.000463287670971146 4662 chr20 35060244 35060244 1 + C T LUAD 35060244 + 35060224 35060264 41 CGCCCACGGAGGCCTTCGCCCGCGAGGCCCGCTTCCCCGGG CGCCCACGGAGGCCTTCGCCTGCGAGGCCCGCTTCCCCGGG Direct Loss 0.953119315345748 0 0.88637453 0 prediction 0.906238630691496 Functional Loss - DLGAP4 ENSG00000080845 CDS Human protein_coding chr20:35060244 chr20:35060244 nonsynonymous SNV 0.633 1 21 hm5C_associated_SNPs_49342 0 0 0 0 0 Cytosol 0.500231643921092 0 0.77274906 0.000463287842184856 hm5C_site_4662 DeepMRMD:0.77274906;iRNA_m5C:0.000463287842184856 4663 chr8 98943558 98943558 1 + C T HNSC 98943558 + 98943538 98943578 41 TCGTGACAGATGGGAGACCTCAGGACTCCGTGGCCGAGGTG TCGTGACAGATGGGAGACCTTAGGACTCCGTGGCCGAGGTG Direct Loss 0.953118915615299 0 0.87614197 0 prediction 0.906237831230599 Functional Loss - MATN2 ENSG00000132561 CDS Human protein_coding chr8:98943558 chr8:98943558 stopgain 0.972 1 21 hm5C_associated_SNPs_49343 0 0 0 0 0 Cytosol 0.500231643921093 0 0.75228394 0.000463287842185078 hm5C_site_4663 DeepMRMD:0.75228394;iRNA_m5C:0.000463287842185078 4664 chr17 79077474 79077474 1 + C T SKCM 79077474 + 79077454 79077494 41 GGTCATTTCCGACCCCATTCCGGGGGCCAAGCCCCTGCCGG GGTCATTTCCGACCCCATTCTGGGGGCCAAGCCCCTGCCGG Direct Loss 0.953106174193191 0 0.95557845 0 prediction 0.906212348386381 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79077474 chr17:79077474 nonsynonymous SNV 0.931 4 21 hm5C_associated_SNPs_49344 0 0 0 0 1 Cytosol 0.500231643902647 0 0.9111569 0.000463287805293477 hm5C_site_4664 DeepMRMD:0.9111569;iRNA_m5C:0.000463287805293477 4665 chr20 30556082 30556082 1 + C A rs6061066 30556082 + 30556062 30556102 41 CGGGCGCGGGGAGGCGGCGGCGGCGGCCGGGCCCCCGGGGG CGGGCGCGGGGAGGCGGCGGAGGCGGCCGGGCCCCCGGGGG Direct Loss 0.953096690595986 0 0.93485177 0 prediction 0.906193381191972 Functional Loss - XKR7 ENSG00000260903 CDS Human protein_coding chr20:30556082 chr20:30556082 nonsynonymous SNV 0.617 0 21 hm5C_associated_SNPs_49345 0 0 0 0 0 exosome 0.500231634839883 0 0.86970354 0.00046326967976662 hm5C_site_4665 DeepMRMD:0.86970354;iRNA_m5C:0.00046326967976662 4666 chr19 3585802 3585802 1 + C G CESC 3585802 + 3585782 3585822 41 GCCAAGATCGCCGAAGCCTTCGGGATCGCGCCCACCGAGGT GCCAAGATCGCCGAAGCCTTGGGGATCGCGCCCACCGAGGT Direct Loss 0.953095463243741 0 0.89830685 0 prediction 0.906190926487483 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3585802 chr19:3585802 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_49346 0 0 0 0 1 exosome 0.500231644772711 0 0.7966137 0.000463289545421519 hm5C_site_4666 DeepMRMD:0.7966137;iRNA_m5C:0.000463289545421519 4667 chr12 2930756 2930756 1 + C G LUAD 2930756 + 2930736 2930776 41 GCCTCTTTGCCCTGTGCACCCTGGATGGTGAGCAATGCTAG GCCTCTTTGCCCTGTGCACCGTGGATGGTGAGCAATGCTAG Direct Loss 0.953089200410656 0 0.28694913 0 prediction 0.906178400821312 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930756 chr12:2930756 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_49347 0 0 1 0 2 nucleoplasm 0.500231480466589 0 0 0.000462960933177881 hm5C_site_4667 DeepMRMD:0;iRNA_m5C:0.000462960933177881 4668 chrX 7811258 7811258 1 + C T UCS 7811258 + 7811238 7811278 41 GCGGAAGATGAGTCCAAAGCCGAGAGCCTCGGGACCTCCGG GCGGAAGATGAGTCCAAAGCTGAGAGCCTCGGGACCTCCGG Direct Loss 0.953074872482392 0 0.90612084 0 prediction 0.906149744964785 Functional Loss - VCX ENSG00000182583 CDS Human protein_coding chrX:7811258 chrX:7811258 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_49348 0 0 0 0 1 unknown 0.50023164390658 0 0.81224168 0.000463287813159186 hm5C_site_4668 DeepMRMD:0.81224168;iRNA_m5C:0.000463287813159186 4669 chr19 3179784 3179784 1 + C T STAD 3179784 + 3179764 3179804 41 GGTGTCTCCGGCTGGGCATGCGAGGGCCCGGGGACTGCCTG GGTGTCTCCGGCTGGGCATGTGAGGGCCCGGGGACTGCCTG Direct Loss 0.953073034862834 0 0.93782926 0 prediction 0.906146069725669 Functional Loss - S1PR4 ENSG00000125910 CDS Human protein_coding chr19:3179784 chr19:3179784 stopgain 0.027 0 21 hm5C_associated_SNPs_49349 0 0 0 0 0 exosome 0.500231643921092 0 0.87565852 0.000463287842184856 hm5C_site_4669 DeepMRMD:0.87565852;iRNA_m5C:0.000463287842184856 4670 chr11 71276711 71276711 1 + C T rs570855626 71276711 + 71276691 71276731 41 GGCTGTGGGGGCTGTGGCTCCGGCTGTGGGGGCTATGGCTC GGCTGTGGGGGCTGTGGCTCTGGCTGTGGGGGCTATGGCTC Direct Loss 0.953072262481514 0 0.9062835 0 prediction 0.906144524963029 Functional Loss - KRTAP5-10 ENSG00000204572 CDS Human protein_coding chr11:71276711 chr11:71276711 synonymous SNV . 0 21 hm5C_associated_SNPs_49350 0 0 0 0 0 unknown 0.500231643921093 0 0.812567 0.000463287842185078 hm5C_site_4670 DeepMRMD:0.812567;iRNA_m5C:0.000463287842185078 4671 chr19 3543943 3543943 1 + C T KIRP 3543943 + 3543923 3543963 41 AGAACTACCGGGAGTGGGTCCTGGAACCATACTGCCCCTCC AGAACTACCGGGAGTGGGTCTTGGAACCATACTGCCCCTCC Direct Loss 0.953051245077536 0 0.4024743 0 prediction 0.906102490155072 Functional Loss - C19orf71 ENSG00000183397 CDS Human protein_coding chr19:3543943 chr19:3543943 synonymous SNV . 0 21 hm5C_associated_SNPs_49351 0 0 0 0 0 nucleolus 0.500231643730205 0 0 0.000463287460410022 hm5C_site_4671 DeepMRMD:0;iRNA_m5C:0.000463287460410022 4672 chr1 149858827 149858827 1 + C T BLCA 149858827 + 149858807 149858847 41 AACAAGCTGCTGGGCAAAGTCACCATCGCCCAGGGCGGCGT AACAAGCTGCTGGGCAAAGTTACCATCGCCCAGGGCGGCGT Direct Loss 0.953042563712991 0 0.44852227 0 prediction 0.906085127425983 Functional Loss - HIST2H2AC ENSG00000184260 CDS Human protein_coding chr1:149858827 chr1:149858827 synonymous SNV . 0 21 hm5C_associated_SNPs_49352 0 0 1 0 0 Ribosome 0.500231643969122 0 0 0.000463287938243573 hm5C_site_4672 DeepMRMD:0;iRNA_m5C:0.000463287938243573 4673 chrX 128922467 128922467 1 + C T UCEC 128922467 + 128922447 128922487 41 CTGGGAAGAGTGGCAAAAAGCTGGGGAAGAAGTGGAGGGCA CTGGGAAGAGTGGCAAAAAGTTGGGGAAGAAGTGGAGGGCA Direct Loss 0.953035962473974 0 0.81568694 0 prediction 0.906071924947948 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128922467 chrX:128922467 synonymous SNV . 0 21 hm5C_associated_SNPs_49353 0 0 0 0 2 exosome 0.500231642928745 0 0.63137388 0.000463285857490447 hm5C_site_4673 DeepMRMD:0.63137388;iRNA_m5C:0.000463285857490447 4674 chr14 73570053 73570053 1 + C T UCEC 73570053 + 73570033 73570073 41 AACGAGAAAAGGAGAAAGAACGGGAGCGGGAACGAGAACGG AACGAGAAAAGGAGAAAGAATGGGAGCGGGAACGAGAACGG Direct Loss 0.953026556584805 0 0.85386264 0 prediction 0.906053113169609 Functional Loss - RBM25 ENSG00000119707 CDS Human protein_coding chr14:73570053 chr14:73570053 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49354 0 0 1 0 0 Nucleus 0.500231643921092 0 0.70772528 0.000463287842184856 hm5C_site_4674 DeepMRMD:0.70772528;iRNA_m5C:0.000463287842184856 4675 chr2 133402909 133402909 1 + G A COAD 133402909 - 133402889 133402929 41 TCGTGGTTGGCGTGCTGCAGCGACAGGCGGCAGCACAGCAC TCGTGGTTGGCGTGCTGCAGTGACAGGCGGCAGCACAGCAC Direct Loss 0.953024761684277 0 0.8530296 0 prediction 0.906049523368554 Functional Loss - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133402909 chr2:133402909 synonymous SNV . 0 21 hm5C_associated_SNPs_49355 0 0 0 0 0 nucleus 0.500231643921296 0 0.7060592 0.000463287842591864 hm5C_site_4675 DeepMRMD:0.7060592;iRNA_m5C:0.000463287842591864 4676 chr6 35280183 35280183 1 + C T rs35395160 35280183 + 35280163 35280203 41 GCCCAGGTGGCCCAGACCACCGGGGGGCTCAGCGTCTGGCA GCCCAGGTGGCCCAGACCACTGGGGGGCTCAGCGTCTGGCA Direct Loss 0.95302319569971 0 0.95475817 0 prediction 0.906046391399419 Functional Loss - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35280183 chr6:35280183 synonymous SNV . 0 21 hm5C_associated_SNPs_49356 0 0 0 0 0 Ribosome 0.500231643921093 0 0.90951634 0.0004632878421853 hm5C_site_4676 DeepMRMD:0.90951634;iRNA_m5C:0.0004632878421853 4677 chr6 41889409 41889409 1 + C A rs3763273 41889409 + 41889389 41889429 41 GGGCGGGGGTCCGGGAGAAGCGGCGGGGTCGCGGGACAGGA GGGCGGGGGTCCGGGAGAAGAGGCGGGGTCGCGGGACAGGA Direct Loss 0.953009429542477 0 0.9054537 0 prediction 0.906018859084954 Functional Loss - BYSL ENSG00000112578 CDS Human protein_coding chr6:41889409 chr6:41889409 synonymous SNV . 0 21 hm5C_associated_SNPs_49357 0 0 1 0 0 Ribosome 0.500229674841959 0 0.8109074 0.000459349683917809 hm5C_site_4677 DeepMRMD:0.8109074;iRNA_m5C:0.000459349683917809 4678 chr6 26505209 26505209 1 + C A UCEC 26505209 + 26505189 26505229 41 AAGAGAATGGAGAAATCTGTCTGGAGTGCACCTCAGTGGGA AAGAGAATGGAGAAATCTGTATGGAGTGCACCTCAGTGGGA Direct Loss 0.952998823181317 0 0.79673445 0 prediction 0.905997646362634 Functional Loss - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26505209 chr6:26505209 nonsynonymous SNV 0.487 4 21 hm5C_associated_SNPs_49358 0 0 0 0 1 nucleoplasm 0.500231658342562 0 0.5934689 0.000463316685124449 hm5C_site_4678 DeepMRMD:0.5934689;iRNA_m5C:0.000463316685124449 4679 chr3 122296665 122296665 1 + C T COAD 122296665 + 122296645 122296685 41 CGGCCGGGAACCGTGGGGCGCGGAAGGCCTCCCGGCGCTCT CGGCCGGGAACCGTGGGGCGTGGAAGGCCTCCCGGCGCTCT Direct Loss 0.952998456646734 0 0.87356627 0 prediction 0.905996913293468 Functional Loss - PARP15 ENSG00000173200 CDS Human protein_coding chr3:122296665 chr3:122296665 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_49359 0 0 0 0 1 exosome 0.500231643921149 0 0.74713254 0.000463287842297877 hm5C_site_4679 DeepMRMD:0.74713254;iRNA_m5C:0.000463287842297877 4680 chr3 9743591 9743591 1 + C T UVM 9743591 + 9743571 9743611 41 CCCAGTCCTTCCGGTGCCATCGGGGGCCTGCTGGAGCAATT CCCAGTCCTTCCGGTGCCATTGGGGGCCTGCTGGAGCAATT Direct Loss 0.952982841782562 0 0.94222164 0 prediction 0.905965683565125 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9743591 chr3:9743591 synonymous SNV . 0 21 hm5C_associated_SNPs_49360 0 0 1 1 0 Ribosome 0.500231643921092 0 0.88444328 0.000463287842184856 hm5C_site_4680 DeepMRMD:0.88444328;iRNA_m5C:0.000463287842184856 4681 chr6 21594847 21594847 1 + C G rs140231408 21594847 + 21594827 21594867 41 ACTCGGGCGCCGGCCTCGAGCTGGGAATCGCCTCCTCCCCC ACTCGGGCGCCGGCCTCGAGGTGGGAATCGCCTCCTCCCCC Direct Loss 0.952982765891216 0 0.91377723 0 prediction 0.905965531782432 Functional Loss - SOX4 ENSG00000124766 CDS Human protein_coding chr6:21594847 chr6:21594847 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49361 0 0 1 0 0 Nucleus 0.500231644228734 0 0.82755446 0.000463288457468236 hm5C_site_4681 DeepMRMD:0.82755446;iRNA_m5C:0.000463288457468236 4682 chr20 58342339 58342339 1 + C A LUAD 58342339 + 58342319 58342359 41 CCTTAGCTGGGGCTGACTCCCTGGACAGTCCTCCCAGACCT CCTTAGCTGGGGCTGACTCCATGGACAGTCCTCCCAGACCT Direct Loss 0.95298175160285 0 0.6823357 0 prediction 0.905963503205701 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58342339 chr20:58342339 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_49362 0 0 0 0 1 exosome 0.500231643921092 0 0.3646714 0.000463287842184856 hm5C_site_4682 DeepMRMD:0.3646714;iRNA_m5C:0.000463287842184856 4683 chr16 67577057 67577057 1 + C T UCEC 67577057 + 67577037 67577077 41 GAGGGTCTGGGGACAGGAGCCTGGAGGAGGCACTGGGGGCC GAGGGTCTGGGGACAGGAGCTTGGAGGAGGCACTGGGGGCC Direct Loss 0.952976932414213 0 0.89165866 0 prediction 0.905953864828426 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67577057 chr16:67577057 synonymous SNV . 0 21 hm5C_associated_SNPs_49363 0 0 0 0 0 unknown 0.500231643511635 0 0.78331732 0.00046328702326992 hm5C_site_4683 DeepMRMD:0.78331732;iRNA_m5C:0.00046328702326992 4684 chr1 3397025 3397025 1 + C A COAD 3397025 + 3397005 3397045 41 GGTTCAGGGTGGCTCTATGGCGAGAGGCTCCGGGACGGAGA GGTTCAGGGTGGCTCTATGGAGAGAGGCTCCGGGACGGAGA Direct Loss 0.952976930167239 0 0.948173 0 prediction 0.905953860334477 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3397025 chr1:3397025 synonymous SNV . 0 21 hm5C_associated_SNPs_49364 0 0 1 0 0 Ribosome 0.500231643921089 0 0.896346 0.000463287842178195 hm5C_site_4684 DeepMRMD:0.896346;iRNA_m5C:0.000463287842178195 4685 chr17 7606722 7606722 1 + C A rs7640 7606722 + 7606702 7606742 41 GCTCTGGTGGTGTGGGGGGGCGCCAGACTCCAGCATCCCTG GCTCTGGTGGTGTGGGGGGGAGCCAGACTCCAGCATCCCTG Direct Loss 0.952967652109511 0 0.9044945 0 prediction 0.905935304219022 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606722 chr17:7606722 nonsynonymous SNV 0.009 1 21 hm5C_associated_SNPs_49365 0 1 0 0 0 Ribosome 0.500231643920905 0 0.808989 0.000463287841810267 hm5C_site_4685 DeepMRMD:0.808989;iRNA_m5C:0.000463287841810267 4686 chr7 150417936 150417936 1 + C T LUSC 150417936 + 150417916 150417956 41 GGCTGGGCCTGGCCCTGCTGCTGGGGGGCGCGCTCCTGTTC GGCTGGGCCTGGCCCTGCTGTTGGGGGGCGCGCTCCTGTTC Direct Loss 0.952964129751309 0 0.8645535 0 prediction 0.905928259502618 Functional Loss - GIMAP1 ENSG00000213203 CDS Human protein_coding chr7:150417936 chr7:150417936 synonymous SNV . 0 21 hm5C_associated_SNPs_49366 0 0 0 0 0 exosome 0.500231643921121 0 0.729107 0.000463287842242366 hm5C_site_4686 DeepMRMD:0.729107;iRNA_m5C:0.000463287842242366 4687 chr11 6867160 6867160 1 + C T LUAD 6867160 + 6867140 6867180 41 TAGTCATTGTGCCCAAAATGCTGGGGACCCTGCTTGCCCAG TAGTCATTGTGCCCAAAATGTTGGGGACCCTGCTTGCCCAG Direct Loss 0.952963044170065 0 0.86410475 0 prediction 0.90592608834013 Functional Loss - OR10A5 ENSG00000166363 CDS Human protein_coding chr11:6867160 chr11:6867160 synonymous SNV . 0 21 hm5C_associated_SNPs_49367 0 0 0 0 0 unknown 0.500231643921092 0 0.7282095 0.000463287842184856 hm5C_site_4687 DeepMRMD:0.7282095;iRNA_m5C:0.000463287842184856 4688 chr20 6750872 6750872 1 + C T ESCA 6750872 + 6750852 6750892 41 GAGCTGGGCCGCAGGAAGTTCGCGGCGGCGTCGTCGGGCCG GAGCTGGGCCGCAGGAAGTTTGCGGCGGCGTCGTCGGGCCG Direct Loss 0.952956139240007 0 0.9191811 0 prediction 0.905912278480014 Functional Loss - BMP2 ENSG00000125845 CDS Human protein_coding chr20:6750872 chr20:6750872 synonymous SNV . 0 21 hm5C_associated_SNPs_49368 0 0 0 0 0 Ribosome 0.500231643921091 0 0.8383622 0.000463287842182414 hm5C_site_4688 DeepMRMD:0.8383622;iRNA_m5C:0.000463287842182414 4689 chr3 50005234 50005234 1 + C T COAD 50005234 + 50005214 50005254 41 ACATACATTCTGGGGATTTTCGGGATAGAGAAGGACCACCT ACATACATTCTGGGGATTTTTGGGATAGAGAAGGACCACCT Direct Loss 0.952940150213748 0 0.9090967 0 prediction 0.905880300427496 Functional Loss - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005234 chr3:50005234 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49369 0 0 1 0 0 Nucleus 0.500231643921092 0 0.8181934 0.000463287842184856 hm5C_site_4689 DeepMRMD:0.8181934;iRNA_m5C:0.000463287842184856 4690 chr1 110009695 110009695 1 + C G rs545789101 110009695 + 110009675 110009715 41 CCGCAGGTGGACCGCCTACTCGTGGGGCTGCGCTGGCGGCG CCGCAGGTGGACCGCCTACTGGTGGGGCTGCGCTGGCGGCG Direct Loss 0.952930780161952 0 0.92111486 0 prediction 0.905861560323904 Functional Loss - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110009695 chr1:110009695 synonymous SNV . 0 21 hm5C_associated_SNPs_49370 0 0 0 0 2 exosome 0.500231643921092 0 0.84222972 0.000463287842184856 hm5C_site_4690 DeepMRMD:0.84222972;iRNA_m5C:0.000463287842184856 4691 chr5 76115011 76115011 1 + C A rs61749608 76115011 + 76114991 76115031 41 TCGGGGCTTCCAGGAGGATGCGGAGCCCCAGCGCGGCGTGG TCGGGGCTTCCAGGAGGATGAGGAGCCCCAGCGCGGCGTGG Direct Loss 0.95292985279288 0 0.93534315 0 prediction 0.90585970558576 Functional Loss - F2RL1 ENSG00000164251 CDS Human protein_coding chr5:76115011 chr5:76115011 synonymous SNV . 0 21 hm5C_associated_SNPs_49371 0 0 1 0 1 Ribosome 0.500231657202477 0 0.8706863 0.000463314404954396 hm5C_site_4691 DeepMRMD:0.8706863;iRNA_m5C:0.000463314404954396 4692 chr16 67683016 67683016 1 + C A BLCA 67683016 + 67682996 67683036 41 GTGACTCTGGTGCTGGCCATCGGGAGAAGCCGGTCCCTGAG GTGACTCTGGTGCTGGCCATAGGGAGAAGCCGGTCCCTGAG Direct Loss 0.952928890174489 0 0.9614115 0 prediction 0.905857780348977 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67683016 chr16:67683016 synonymous SNV . 0 21 hm5C_associated_SNPs_49372 0 0 0 0 2 chromatin 0.500231643921039 0 0.922823 0.000463287842077609 hm5C_site_4692 DeepMRMD:0.922823;iRNA_m5C:0.000463287842077609 4693 chr15 93426125 93426125 1 + C T rs528765589 93426125 + 93426105 93426145 41 CAGGCGTTCCGCCGCGGCCGCGAGGCCCGCCGGCCGGCGGG CAGGCGTTCCGCCGCGGCCGTGAGGCCCGCCGGCCGGCGGG Direct Loss 0.952923277006584 0 0.90980464 0 prediction 0.905846554013168 Functional Loss - LINC01578 ENSG00000272888 ncRNA_exonic Human processed_transcript chr15:93426125 chr15:93426125 . . 0 21 hm5C_associated_SNPs_49373 0 0 1 0 0 unknown 0.500231634432995 0 0.81960928 0.000463268865990685 hm5C_site_4693 DeepMRMD:0.81960928;iRNA_m5C:0.000463268865990685 4694 chr17 42152399 42152399 1 + C T SKCM 42152399 + 42152379 42152419 41 CCTTTTGGCGGTTGGCTTGTCGCGAATCTTCATCTTAGCAC CCTTTTGGCGGTTGGCTTGTTGCGAATCTTCATCTTAGCAC Direct Loss 0.952911764844439 0 0.38462868 0 prediction 0.905823529688879 Functional Loss - G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42152399 chr17:42152399 nonsynonymous SNV 0.810 5 21 hm5C_associated_SNPs_49374 0 0 1 0 2 Ribosome 0.500231644046744 0 0 0.000463288093487613 hm5C_site_4694 DeepMRMD:0;iRNA_m5C:0.000463288093487613 4695 chr3 16242184 16242184 1 + C T COAD 16242184 + 16242164 16242204 41 CTGGAGGGGGTGAAGTTACTCAGGAGCAACAAGAGGCTGGG CTGGAGGGGGTGAAGTTACTTAGGAGCAACAAGAGGCTGGG Direct Loss 0.952908069325911 0 0.909642 0 prediction 0.905816138651822 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16242184 chr3:16242184 stopgain . 0 21 hm5C_associated_SNPs_49375 0 0 0 0 1 exosome 0.500231643921783 0 0.819284 0.00046328784356553 hm5C_site_4695 DeepMRMD:0.819284;iRNA_m5C:0.00046328784356553 4696 chr6 3850153 3850153 1 + C T COAD 3850153 + 3850133 3850173 41 GTGCTGAAGCAGCGCATCGCCGAGGAGACCATCCTCAAGTC GTGCTGAAGCAGCGCATCGCTGAGGAGACCATCCTCAAGTC Direct Loss 0.952886621835173 0 0.90571356 0 prediction 0.905773243670345 Functional Loss - FAM50B ENSG00000145945 CDS Human protein_coding chr6:3850153 chr6:3850153 synonymous SNV . 0 21 hm5C_associated_SNPs_49376 0 0 0 0 0 exosome 0.500231655707968 0 0.81142712 0.000463311415935808 hm5C_site_4696 DeepMRMD:0.81142712;iRNA_m5C:0.000463311415935808 4697 chr11 209728 209728 1 + C T UCEC 209728 + 209708 209748 41 CAGAGCGTGTGGGGCTGTACCGTGAGAGGAGCTTCCCCCAC CAGAGCGTGTGGGGCTGTACTGTGAGAGGAGCTTCCCCCAC Direct Loss 0.952883802741402 0 0.87482005 0 prediction 0.905767605482804 Functional Loss - RIC8A ENSG00000177963 CDS Human protein_coding chr11:209728 chr11:209728 nonsynonymous SNV 0.271 2 21 hm5C_associated_SNPs_49377 0 0 1 0 0 Ribosome 0.500231643921092 0 0.7496401 0.000463287842184856 hm5C_site_4697 DeepMRMD:0.7496401;iRNA_m5C:0.000463287842184856 4698 chr22 30163499 30163499 1 + C T BLCA 30163499 + 30163479 30163519 41 TCTTCGAGCGCGCCTTCGATCAAGGCGCGGACGCTATCTAC TCTTCGAGCGCGCCTTCGATTAAGGCGCGGACGCTATCTAC Direct Loss 0.95287533038516 0 0.9199492 0 prediction 0.90575066077032 Functional Loss - UQCR10 ENSG00000184076 CDS Human protein_coding chr22:30163499 chr22:30163499 stopgain 0.999 0 21 hm5C_associated_SNPs_49378 0 0 1 0 2 Cytosol 0.500231643921011 0 0.8398984 0.000463287842021209 hm5C_site_4698 DeepMRMD:0.8398984;iRNA_m5C:0.000463287842021209 4699 chr8 37963239 37963239 1 + C T rs2073351 37963239 + 37963219 37963259 41 CCGACAGTTGAGCCCAGTTCCGGGGAGGCTGAAGGCGGGTA CCGACAGTTGAGCCCAGTTCTGGGGAGGCTGAAGGCGGGTA Direct Loss 0.952871945377899 0 0.90964437 0 prediction 0.905743890755798 Functional Loss - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37963239 chr8:37963239 synonymous SNV . 0 21 hm5C_associated_SNPs_49379 0 0 1 0 1 chromatin 0.500231643921092 0 0.81928874 0.000463287842184856 hm5C_site_4699 DeepMRMD:0.81928874;iRNA_m5C:0.000463287842184856 4700 chr5 170222290 170222290 1 + C G CESC 170222290 + 170222270 170222310 41 AAGGCAACAAGAGCTTCACTCTGGATGCCCGCCTCGTGGAG AAGGCAACAAGAGCTTCACTGTGGATGCCCGCCTCGTGGAG Direct Loss 0.952870694043291 0 0.52826244 0 prediction 0.905741388086582 Functional Loss - GABRP ENSG00000094755 CDS Human protein_coding chr5:170222290 chr5:170222290 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_49380 0 0 0 0 1 Cytosol 0.500231643921092 0 0.05652488 0.000463287842184856 hm5C_site_4700 DeepMRMD:0.05652488;iRNA_m5C:0.000463287842184856 4701 chr17 42148507 42148507 1 + C T BLCA 42148507 + 42148487 42148527 41 CGTGTGGGCATCGCGGTGCTCTGGATCAGCCTCATCACCGA CGTGTGGGCATCGCGGTGCTTTGGATCAGCCTCATCACCGA Direct Loss 0.952864170633791 0 0.3461992 0 prediction 0.905728341267582 Functional Loss - G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42148507 chr17:42148507 synonymous SNV . 0 21 hm5C_associated_SNPs_49381 0 0 1 0 1 Ribosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4701 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4702 chr21 43531325 43531325 1 + C T rs114358105 43531325 + 43531305 43531345 41 CCAGCCAGGGGAGCCTCAGACAGGAGAGTACCAGCCAGGCG CCAGCCAGGGGAGCCTCAGATAGGAGAGTACCAGCCAGGCG Direct Loss 0.952852111080748 0 0.93630695 0 prediction 0.905704222161497 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43531325 chr21:43531325 stopgain 0.002 0 21 hm5C_associated_SNPs_49382 0 0 0 0 0 exosome 0.500230513284015 0 0.8726139 0.000461026568029599 hm5C_site_4702 DeepMRMD:0.8726139;iRNA_m5C:0.000461026568029599 4703 chr1 156108491 156108491 1 + C A rs117939448 156108491 + 156108471 156108511 41 GGCAGTGGGGGTGGCAGCTTCGGGGACAATCTGGTCACCCG GGCAGTGGGGGTGGCAGCTTAGGGGACAATCTGGTCACCCG Direct Loss 0.952849889406576 0 0.93482685 0 prediction 0.905699778813152 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156108491 chr1:156108491 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_49383 0 0 1 2 0 Cytosol 0.500231643921092 0 0.8696537 0.000463287842184856 hm5C_site_4703 DeepMRMD:0.8696537;iRNA_m5C:0.000463287842184856 4704 chr19 39395976 39395976 1 + C T UCEC 39395976 + 39395956 39395996 41 GCCTGCCGTGTGGGGGCACACGCCTGTGCCCGTGCCCTGCT GCCTGCCGTGTGGGGGCACATGCCTGTGCCCGTGCCCTGCT Direct Loss 0.952832684766672 0 0.18674746 0 prediction 0.905665369533345 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395976 chr19:39395976 synonymous SNV . 0 21 hm5C_associated_SNPs_49384 0 0 1 0 0 Ribosome 0.500231671657519 0 0 0.000463343315038056 hm5C_site_4704 DeepMRMD:0;iRNA_m5C:0.000463343315038056 4705 chr4 147561099 147561099 1 + C T UCEC 147561099 + 147561079 147561119 41 GTGGACATCGTCTCCCAGAGCAAGAGCCACCACCACCATCC GTGGACATCGTCTCCCAGAGTAAGAGCCACCACCACCATCC Direct Loss 0.952827510579338 0 0.4564409 0 prediction 0.905655021158677 Functional Loss - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147561099 chr4:147561099 synonymous SNV . 0 21 hm5C_associated_SNPs_49385 0 0 0 0 1 unknown 0.500231643921055 0 0 0.000463287842109139 hm5C_site_4705 DeepMRMD:0;iRNA_m5C:0.000463287842109139 4706 chr7 74197366 74197366 1 + C T HNSC 74197366 + 74197346 74197386 41 CTCCGAGATGGCTCTGTCCACGGGGGACGTGGTGGAGGTCG CTCCGAGATGGCTCTGTCCATGGGGGACGTGGTGGAGGTCG Direct Loss 0.952824541704158 0 0.8888846 0 prediction 0.905649083408316 Functional Loss - NCF1 ENSG00000158517 CDS Human protein_coding chr7:74197366 chr7:74197366 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49386 0 0 0 0 2 exosome 0.500231641761161 0 0.7777692 0.000463283522321056 hm5C_site_4706 DeepMRMD:0.7777692;iRNA_m5C:0.000463283522321056 4707 chr1 109241968 109241968 1 + C T UCEC 109241968 + 109241948 109241988 41 GAAGATCCCGAAGTATTGACCGGGGGTTAGAACGCAGGCGC GAAGATCCCGAAGTATTGACTGGGGGTTAGAACGCAGGCGC Direct Loss 0.952808680084426 0 0.9417686 0 prediction 0.905617360168852 Functional Loss - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109241968 chr1:109241968 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_49387 0 0 1 0 0 Nucleus 0.500231643921092 0 0.8835372 0.000463287842183968 hm5C_site_4707 DeepMRMD:0.8835372;iRNA_m5C:0.000463287842183968 4708 chr6 32613376 32613376 1 + C T rs9273187 32613376 + 32613356 32613396 41 GGCCCGGGGGTTGGGGACCTCTGGGATACCTCTGCACCTTC GGCCCGGGGGTTGGGGACCTTTGGGATACCTCTGCACCTTC Direct Loss 0.952795860955849 0 0.9065246 0 prediction 0.905591721911698 Functional Loss - HLA-DQA1;HLA-DQB1 ENSG00000196735;ENSG00000179344 intergenic Human other chr6:32613376 chr6:32613376 . . 0 21 hm5C_associated_SNPs_49388 0 0 0 0 0 unknown 0.500231646090423 0 0.8130492 0.000463292180846731 hm5C_site_4708 DeepMRMD:0.8130492;iRNA_m5C:0.000463292180846731 4709 chr2 86439855 86439855 1 + C T rs370852770 86439855 + 86439835 86439875 41 GCTGACAGGCACATAACTTACGGGAAAGGGAATTTCATACA GCTGACAGGCACATAACTTATGGGAAAGGGAATTTCATACA Direct Loss 0.952790707271706 0 0.8113618 0 prediction 0.905581414543412 Functional Loss - MRPL35 ENSG00000132313 UTR3 Human protein_coding chr2:86439855 chr2:86439855 . . 0 21 hm5C_associated_SNPs_49389 0 0 1 2 0 Ribosome 0.500231644217231 0 0.6227236 0.000463288434462861 hm5C_site_4709 DeepMRMD:0.6227236;iRNA_m5C:0.000463288434462861 4710 chr11 101786106 101786106 1 + C T STAD 101786106 + 101786086 101786126 41 ACAGAGCCCCCCTCGGCCCTCGGGAGAGCGGCGGGCATCAC ACAGAGCCCCCCTCGGCCCTTGGGAGAGCGGCGGGCATCAC Direct Loss 0.952789398793719 0 0.9255496 0 prediction 0.905578797587438 Functional Loss - CEP126 ENSG00000110318 CDS Human protein_coding chr11:101786106 chr11:101786106 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_49390 0 0 0 0 1 exosome 0.500231643920293 0 0.8510992 0.000463287840585691 hm5C_site_4710 DeepMRMD:0.8510992;iRNA_m5C:0.000463287840585691 4711 chr15 69325543 69325543 1 + C A UCEC 69325543 + 69325523 69325563 41 GGCTGGCGGCCAGCGCGCACCGGGACCTCGGCGCCAGCGTC GGCTGGCGGCCAGCGCGCACAGGGACCTCGGCGCCAGCGTC Direct Loss 0.952788777391125 0 0.8937932 0 prediction 0.90557755478225 Functional Loss - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69325543 chr15:69325543 synonymous SNV . 0 21 hm5C_associated_SNPs_49391 0 0 0 0 1 nucleus 0.500231620628329 0 0.7875864 0.000463241256657643 hm5C_site_4711 DeepMRMD:0.7875864;iRNA_m5C:0.000463241256657643 4712 chr4 41983834 41983834 1 + C T UCEC 41983834 + 41983814 41983854 41 AGGCTGAAAGGCTGCGACTCCTCGAGGAAGAGGCCAAGCTG AGGCTGAAAGGCTGCGACTCTTCGAGGAAGAGGCCAAGCTG Direct Loss 0.95277374219654 0 0.57069826 0 prediction 0.90554748439308 Functional Loss - DCAF4L1 ENSG00000182308 CDS Human protein_coding chr4:41983834 chr4:41983834 nonsynonymous SNV 0.778 3 21 hm5C_associated_SNPs_49392 0 0 0 0 0 Nucleus 0.500231765575671 0 0.14139652 0.000463531151342567 hm5C_site_4712 DeepMRMD:0.14139652;iRNA_m5C:0.000463531151342567 4713 chr2 179209024 179209024 1 + C A UCEC 179209024 + 179209004 179209044 41 CACCGTCAGGAAGGGCCACCCGCGAAGGGCCAGTTCAGCAC CACCGTCAGGAAGGGCCACCAGCGAAGGGCCAGTTCAGCAC Direct Loss 0.952773182774081 0 0.44366562 0 prediction 0.905546365548161 Functional Loss - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179209024 chr2:179209024 synonymous SNV . 0 21 hm5C_associated_SNPs_49393 0 0 0 0 2 Cytosol 0.5002316439211 0 0 0.000463287842199067 hm5C_site_4713 DeepMRMD:0;iRNA_m5C:0.000463287842199067 4714 chr3 147127935 147127935 1 + C T STAD 147127935 + 147127915 147127955 41 GGCCCCCAGTACCCAGCGATCGGCGTGACCACCTTTGGCGC GGCCCCCAGTACCCAGCGATTGGCGTGACCACCTTTGGCGC Direct Loss 0.95276797628316 0 0.93405795 0 prediction 0.905535952566319 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147127935 chr3:147127935 synonymous SNV . 0 21 hm5C_associated_SNPs_49394 0 0 0 0 0 exosome 0.5002316966867 0 0.8681159 0.000463393373399512 hm5C_site_4714 DeepMRMD:0.8681159;iRNA_m5C:0.000463393373399512 4715 chr17 40818365 40818365 1 + C T SKCM 40818365 + 40818345 40818385 41 ACAAGAGCCTGCAGAGGATCCGGGAACGGAAGTTGGCCAAC ACAAGAGCCTGCAGAGGATCTGGGAACGGAAGTTGGCCAAC Direct Loss 0.952765384942294 0 0.8833325 0 prediction 0.905530769884589 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818365 chr17:40818365 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49395 0 0 1 0 1 Cytosol 0.500231643958159 0 0.766665 0.000463287916318444 hm5C_site_4715 DeepMRMD:0.766665;iRNA_m5C:0.000463287916318444 4716 chr15 65242076 65242076 1 + C G BLCA 65242076 + 65242056 65242096 41 TCTCAGGCACCAGGAGCTATCAGGAGCACGGCCACCGAATG TCTCAGGCACCAGGAGCTATGAGGAGCACGGCCACCGAATG Direct Loss 0.952751460387068 0 0.9406097 0 prediction 0.905502920774135 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65242076 chr15:65242076 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49396 0 0 0 0 1 nucleoplasm 0.500231861235196 0 0.8812194 0.000463722470391836 hm5C_site_4716 DeepMRMD:0.8812194;iRNA_m5C:0.000463722470391836 4717 chr5 180420041 180420041 1 + C T DLBC 180420041 + 180420021 180420061 41 GTTTGTGAAGGACTCCATTGCAGGGGGGCGTGTCTCTCTAA GTTTGTGAAGGACTCCATTGTAGGGGGGCGTGTCTCTCTAA Direct Loss 0.952741670551035 0 0.9653225 0 prediction 0.90548334110207 Functional Loss - BTNL3 ENSG00000168903 CDS Human protein_coding chr5:180420041 chr5:180420041 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49397 0 0 0 0 0 nucleus 0.500231643940481 0 0.930645 0.00046328788096206 hm5C_site_4717 DeepMRMD:0.930645;iRNA_m5C:0.00046328788096206 4718 chr1 200880683 200880683 1 + C T LGG 200880683 + 200880663 200880703 41 GTGCCAGATTCCTGCTTTCCCGCGACCAAGCCCCCGCTGCC GTGCCAGATTCCTGCTTTCCTGCGACCAAGCCCCCGCTGCC Direct Loss 0.9527346190168 0 0.26092058 0 prediction 0.905469238033601 Functional Loss - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200880683 chr1:200880683 synonymous SNV . 0 21 hm5C_associated_SNPs_49398 0 0 0 0 0 cytosol 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4718 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4719 chr19 14142711 14142711 1 + C T BLCA 14142711 + 14142691 14142731 41 GGAGGCAGGGGCGCCCCTTTCTGGCTGTGGCCGCTGCCCAA GGAGGCAGGGGCGCCCCTTTTTGGCTGTGGCCGCTGCCCAA Direct Loss 0.952732901773516 0 0.88447595 0 prediction 0.905465803547032 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14142711 chr19:14142711 synonymous SNV . 0 21 hm5C_associated_SNPs_49399 0 0 1 0 0 chromatin 0.500231643920697 0 0.7689519 0.0004632878413946 hm5C_site_4719 DeepMRMD:0.7689519;iRNA_m5C:0.0004632878413946 4720 chr16 66997261 66997261 1 + C T UCEC 66997261 + 66997241 66997281 41 CACAGCCCTGGGAGGGTGTGCGGGATGCCAGCACTGCGCCC CACAGCCCTGGGAGGGTGTGTGGGATGCCAGCACTGCGCCC Direct Loss 0.952718301806189 0 0.9258838 0 prediction 0.905436603612379 Functional Loss - CES3 ENSG00000172828 CDS Human protein_coding chr16:66997261 chr16:66997261 nonsynonymous SNV 0.067 1 21 hm5C_associated_SNPs_49400 0 0 1 0 1 nucleolus 0.500231643923247 0 0.8517676 0.000463287846494964 hm5C_site_4720 DeepMRMD:0.8517676;iRNA_m5C:0.000463287846494964 Diastolic blood pressure 4721 chr10 74034579 74034579 1 + C G rs143474945 74034579 + 74034559 74034599 41 GGCCCAGGCGCGGCTGGGCTCTCGACGCCCTGCGCGCCTGC GGCCCAGGCGCGGCTGGGCTGTCGACGCCCTGCGCGCCTGC Direct Loss 0.952714066519251 0 0.91605145 0 prediction 0.905428133038502 Functional Loss - DDIT4 ENSG00000168209 CDS Human protein_coding chr10:74034579 chr10:74034579 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_49401 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8321029 0.000463287842184856 hm5C_site_4721 DeepMRMD:0.8321029;iRNA_m5C:0.000463287842184856 4722 chr2 28615879 28615879 1 + C G rs189740937 28615879 + 28615859 28615899 41 GCCCGTCCGGGAGCGGGCTCCGGGGAAGGGGTGCGGGTCTG GCCCGTCCGGGAGCGGGCTCGGGGGAAGGGGTGCGGGTCTG Direct Loss 0.952713464871926 0 0.9260952 0 prediction 0.905426929743852 Functional Loss - FLJ31356 ENSG00000229951 ncRNA_intronic Human antisense chr2:28615879 chr2:28615879 . . 0 21 hm5C_associated_SNPs_49402 0 0 1 0 0 unknown 0.500231643921092 0 0.8521904 0.000463287842184856 hm5C_site_4722 DeepMRMD:0.8521904;iRNA_m5C:0.000463287842184856 4723 chr9 114423992 114423992 1 + C A READ 114423992 + 114423972 114424012 41 GAGGCTGGCGTGGAGAGGATCAAGGTGCGGGCCCCGGGTAC GAGGCTGGCGTGGAGAGGATAAAGGTGCGGGCCCCGGGTAC Direct Loss 0.952699362880811 0 0.90110314 0 prediction 0.905398725761622 Functional Loss - GNG10 ENSG00000242616 CDS Human protein_coding chr9:114423992 chr9:114423992 synonymous SNV . 0 21 hm5C_associated_SNPs_49403 0 0 1 1 1 Cytosol 0.500231643946133 0 0.80220628 0.000463287892266795 hm5C_site_4723 DeepMRMD:0.80220628;iRNA_m5C:0.000463287892266795 4724 chr6 22570050 22570050 1 + C T SKCM 22570050 + 22570030 22570070 41 AGCGCGGGGCTGTGGGAAATCGAGAACAACCCCACGGTCCA AGCGCGGGGCTGTGGGAAATTGAGAACAACCCCACGGTCCA Direct Loss 0.952699107652259 0 0.6090591 0 prediction 0.905398215304518 Functional Loss - HDGFL1 ENSG00000112273 CDS Human protein_coding chr6:22570050 chr6:22570050 synonymous SNV . 0 21 hm5C_associated_SNPs_49404 0 0 0 0 0 unknown 0.500231643921051 0 0.2181182 0.00046328784210159 hm5C_site_4724 DeepMRMD:0.2181182;iRNA_m5C:0.00046328784210159 4725 chr5 140559173 140559173 1 + C T COAD 140559173 + 140559153 140559193 41 ACCTGTTCGCCCTCAGGTCGCTGGACTACGAGGCCCTGCAG ACCTGTTCGCCCTCAGGTCGTTGGACTACGAGGCCCTGCAG Direct Loss 0.952693090540978 0 0.56688046 0 prediction 0.905386181081957 Functional Loss - PCDHB8 ENSG00000120322 CDS Human protein_coding chr5:140559173 chr5:140559173 synonymous SNV . 0 21 hm5C_associated_SNPs_49405 0 0 0 0 0 exosome 0.500231643609719 0 0.13376092 0.000463287219437225 hm5C_site_4725 DeepMRMD:0.13376092;iRNA_m5C:0.000463287219437225 4726 chr1 153391769 153391769 1 + C T SKCM 153391769 + 153391749 153391789 41 CCATGGAGCGGCGCCCTGTTCTGGGGGAAGCCAGTGATCCA CCATGGAGCGGCGCCCTGTTTTGGGGGAAGCCAGTGATCCA Direct Loss 0.952689592160301 0 0.90528864 0 prediction 0.905379184320601 Functional Loss - S100A7A ENSG00000184330 CDS Human protein_coding chr1:153391769 chr1:153391769 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49406 0 0 0 0 0 unknown 0.500231643921094 0 0.81057728 0.000463287842188853 hm5C_site_4726 DeepMRMD:0.81057728;iRNA_m5C:0.000463287842188853 4727 chr19 13879421 13879421 1 + C A KIRC 13879421 + 13879401 13879441 41 GGCCGCCTGGAGCATGCCTTCTGCACAGAGACCCGGCCCTA GGCCGCCTGGAGCATGCCTTATGCACAGAGACCCGGCCCTA Direct Loss 0.952681152244231 0 0.51572114 0 prediction 0.905362304488461 Functional Loss - MRI1 ENSG00000037757 CDS Human protein_coding chr19:13879421 chr19:13879421 nonsynonymous SNV 0.575 2 21 hm5C_associated_SNPs_49407 0 0 1 0 1 Ribosome 0.5002316377994 0 0.03144228 0.00046327559879944 hm5C_site_4727 DeepMRMD:0.03144228;iRNA_m5C:0.00046327559879944 4728 chr7 94293511 94293511 1 + C T BLCA 94293511 + 94293491 94293531 41 AGGGCCTCAGCGACCACATTCAGGAGGAGCTCTCCCACCTC AGGGCCTCAGCGACCACATTTAGGAGGAGCTCTCCCACCTC Direct Loss 0.952659093873974 0 0.9312309 0 prediction 0.905318187747949 Functional Loss - PEG10 ENSG00000242265 CDS Human protein_coding chr7:94293511 chr7:94293511 stopgain 0.029 0 21 hm5C_associated_SNPs_49408 0 0 1 0 0 Endoplasmic reticulum 0.50023164392114 0 0.8624618 0.000463287842279891 hm5C_site_4728 DeepMRMD:0.8624618;iRNA_m5C:0.000463287842279891 4729 chr17 43226680 43226680 1 + C A LUAD 43226680 + 43226660 43226700 41 GGCGCGGAGGAGCGGGTGCCCGAGGAGGACAGTAGGTGGCA GGCGCGGAGGAGCGGGTGCCAGAGGAGGACAGTAGGTGGCA Direct Loss 0.952650427347786 0 0.9057614 0 prediction 0.905300854695573 Functional Loss - HEXIM1 ENSG00000186834 CDS Human protein_coding chr17:43226680 chr17:43226680 synonymous SNV . 0 21 hm5C_associated_SNPs_49409 0 0 1 0 0 Ribosome 0.50023164392104 0 0.8115228 0.000463287842080273 hm5C_site_4729 DeepMRMD:0.8115228;iRNA_m5C:0.000463287842080273 4730 chr14 56585347 56585347 1 + C A rs552449620 56585347 + 56585327 56585367 41 CGCGGCGGAGGCGGCGGCGTCGGCGGCGGCGTCGGCGGCCG CGCGGCGGAGGCGGCGGCGTAGGCGGCGGCGTCGGCGGCCG Direct Loss 0.952645031595306 0 0.93135685 0 prediction 0.905290063190613 Functional Loss - PELI2 ENSG00000139946 UTR5 Human protein_coding chr14:56585347 chr14:56585347 . . 0 21 hm5C_associated_SNPs_49410 0 0 0 0 0 nucleus 0.500231643920956 0 0.8627137 0.000463287841911297 hm5C_site_4730 DeepMRMD:0.8627137;iRNA_m5C:0.000463287841911297 4731 chr1 209849270 209849270 1 + C A STAD 209849270 + 209849250 209849290 41 CTCTCCAGAAGCAAGCCCTGCAGGAGAAAGGCAAGCAGCAG CTCTCCAGAAGCAAGCCCTGAAGGAGAAAGGCAAGCAGCAG Direct Loss 0.952640086152304 0 0.87789047 0 prediction 0.905280172304608 Functional Loss - G0S2 ENSG00000123689 CDS Human protein_coding chr1:209849270 chr1:209849270 nonsynonymous SNV 0.111 0 21 hm5C_associated_SNPs_49411 0 0 0 0 0 exosome 0.500231643921092 0 0.75578094 0.000463287842184856 hm5C_site_4731 DeepMRMD:0.75578094;iRNA_m5C:0.000463287842184856 4732 chr16 2042137 2042137 1 + C T GBM 2042137 + 2042117 2042157 41 CCTGCGCCGCCTTCCTGCTGCTCGATGTGCGCTTCCAGCAA CCTGCGCCGCCTTCCTGCTGTTCGATGTGCGCTTCCAGCAA Direct Loss 0.952635939939465 0 0.0900127 0 prediction 0.905271879878931 Functional Loss - SYNGR3 ENSG00000127561 CDS Human protein_coding chr16:2042137 chr16:2042137 nonsynonymous SNV 0.364 0 21 hm5C_associated_SNPs_49412 0 0 0 0 1 Endoplasmic reticulum 0.500231643718025 0 0 0.000463287436049065 hm5C_site_4732 DeepMRMD:0;iRNA_m5C:0.000463287436049065 4733 chr1 15755221 15755221 1 + C G rs77815160 15755221 + 15755201 15755241 41 TGCAGTCCACCTTTAAGTAGCGGGGGCTGCAGCCGACCGCC TGCAGTCCACCTTTAAGTAGGGGGGGCTGCAGCCGACCGCC Direct Loss 0.952627579700969 0 0.9406198 0 prediction 0.905255159401938 Functional Loss - EFHD2 ENSG00000142634 UTR3 Human protein_coding chr1:15755221 chr1:15755221 . . 0 21 hm5C_associated_SNPs_49413 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8812396 0.000463287842184856 hm5C_site_4733 DeepMRMD:0.8812396;iRNA_m5C:0.000463287842184856 4734 chr7 55955369 55955369 1 + C G rs539438506 55955369 + 55955349 55955389 41 GCCGAAGCGCCCTTTGTCTGCGGAGGTGAGTGCGCGCCGGG GCCGAAGCGCCCTTTGTCTGGGGAGGTGAGTGCGCGCCGGG Direct Loss 0.952627576091873 0 0.9102074 0 prediction 0.905255152183746 Functional Loss - ZNF713 ENSG00000178665;ENSG00000249773 UTR5 Human other chr7:55955369 chr7:55955369 . . 0 21 hm5C_associated_SNPs_49414 0 0 0 0 1 Nucleus 0.500231640162542 0 0.8204148 0.000463280325083693 hm5C_site_4734 DeepMRMD:0.8204148;iRNA_m5C:0.000463280325083693 4735 chr1 78511898 78511898 1 + C A rs201220553 78511898 + 78511878 78511918 41 GCGTCCCGGGCTCCCGCACGCAGGCTGGTCTTCCACGCGCA GCGTCCCGGGCTCCCGCACGAAGGCTGGTCTTCCACGCGCA Direct Loss 0.952621521471592 0 0.9212289 0 prediction 0.905243042943184 Functional Loss - GIPC2 ENSG00000137960 CDS Human protein_coding chr1:78511898 chr1:78511898 synonymous SNV . 0 21 hm5C_associated_SNPs_49415 0 0 1 0 0 nucleus 0.500231644284718 0 0.8424578 0.000463288569436671 hm5C_site_4735 DeepMRMD:0.8424578;iRNA_m5C:0.000463288569436671 4736 chr2 128186330 128186330 1 + C T LUSC 128186330 + 128186310 128186350 41 GGGGACCGGCAGGATGCCTGCGAGGGCGACAGTGGGGGGCC GGGGACCGGCAGGATGCCTGTGAGGGCGACAGTGGGGGGCC Direct Loss 0.952605441257348 0 0.91779745 0 prediction 0.905210882514696 Functional Loss - PROC ENSG00000115718 CDS Human protein_coding chr2:128186330 chr2:128186330 synonymous SNV . 0 21 hm5C_associated_SNPs_49416 0 0 1 0 0 nucleus 0.500231643936393 0 0.8355949 0.000463287872786378 hm5C_site_4736 DeepMRMD:0.8355949;iRNA_m5C:0.000463287872786378 4737 chr2 37319356 37319356 1 + C G BLCA 37319356 + 37319336 37319376 41 ATGAAGCTAGAAGGAGATCTCAGAAGAAGCCAGCGAGCCTG ATGAAGCTAGAAGGAGATCTGAGAAGAAGCCAGCGAGCCTG Direct Loss 0.952597902163821 0 0.8417088 0 prediction 0.905195804327642 Functional Loss - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319356 chr2:37319356 synonymous SNV . 0 21 hm5C_associated_SNPs_49417 0 0 1 0 2 chromatin 0.500231643921092 0 0.6834176 0.000463287842184856 hm5C_site_4737 DeepMRMD:0.6834176;iRNA_m5C:0.000463287842184856 4738 chr6 167585764 167585764 1 + C G rs186539787 167585764 + 167585744 167585784 41 CCCAGGGAGGACAGCAATGCCGGGGAGATGCCGGTGAGCTG CCCAGGGAGGACAGCAATGCGGGGGAGATGCCGGTGAGCTG Direct Loss 0.952597480398975 0 0.9154911 0 prediction 0.90519496079795 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167585764 chr6:167585764 synonymous SNV . 0 21 hm5C_associated_SNPs_49418 0 0 0 0 1 exosome 0.500228980169242 0 0.8309822 0.00045796033848422 hm5C_site_4738 DeepMRMD:0.8309822;iRNA_m5C:0.00045796033848422 4739 chr14 21458675 21458675 1 + C T UCEC 21458675 + 21458655 21458695 41 CAAACACTGACCAGTTATCTCTGGAGCAGACATTTGCCTGT CAAACACTGACCAGTTATCTTTGGAGCAGACATTTGCCTGT Direct Loss 0.952595325667133 0 0.51840645 0 prediction 0.905190651334265 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21458675 chr14:21458675 synonymous SNV . 0 21 hm5C_associated_SNPs_49419 0 0 1 0 2 Ribosome 0.500231882778342 0 0.0368128999999999 0.00046376555668326 hm5C_site_4739 DeepMRMD:0.0368128999999999;iRNA_m5C:0.00046376555668326 4740 chr20 3087649 3087649 1 + C T rs147121855 3087649 + 3087629 3087669 41 GGCCTCAAGCTGGAGAGCTACGGGGGAAGCAGGGCAGGTGT GGCCTCAAGCTGGAGAGCTATGGGGGAAGCAGGGCAGGTGT Direct Loss 0.952590788596056 0 0.9151335 0 prediction 0.905181577192111 Functional Loss - UBOX5-AS1 ENSG00000235958 ncRNA_exonic Human antisense chr20:3087649 chr20:3087649 . . 0 21 hm5C_associated_SNPs_49420 0 0 0 0 0 unknown 0.500231643921085 0 0.830267 0.000463287842169979 hm5C_site_4740 DeepMRMD:0.830267;iRNA_m5C:0.000463287842169979 4741 chr18 76755234 76755234 1 + C T PRAD 76755234 + 76755214 76755254 41 GGCGAGGGTCCCCCGCTGCCCGCGGGCGTCCAGGTCCCCGC GGCGAGGGTCCCCCGCTGCCTGCGGGCGTCCAGGTCCCCGC Direct Loss 0.952586064659461 0 0.87750983 0 prediction 0.905172129318921 Functional Loss - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76755234 chr18:76755234 synonymous SNV . 0 21 hm5C_associated_SNPs_49421 0 0 0 0 0 exosome 0.500231643925016 0 0.75501966 0.000463287850031247 hm5C_site_4741 DeepMRMD:0.75501966;iRNA_m5C:0.000463287850031247 4742 chr17 60814474 60814474 1 + G A COAD 60814474 - 60814454 60814494 41 TCAAGTATTGAGTGAGTTCTCGGGGCCACCACTCACACCCA TCAAGTATTGAGTGAGTTCTTGGGGCCACCACTCACACCCA Direct Loss 0.952585936651227 0 0.952123 0 prediction 0.905171873302454 Functional Loss - MARCH10 ENSG00000173838 CDS Human protein_coding chr17:60814474 chr17:60814474 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_49422 0 0 0 0 0 nucleus 0.500231643921092 0 0.904246 0.000463287842184856 hm5C_site_4742 DeepMRMD:0.904246;iRNA_m5C:0.000463287842184856 4743 chr1 18960982 18960982 1 + C G LUAD 18960982 + 18960962 18961002 41 CCAAGATTCTTTGCCGCTACCAGGAGACCGGGTCCATCCGG CCAAGATTCTTTGCCGCTACGAGGAGACCGGGTCCATCCGG Direct Loss 0.952582304979679 0 0.9489993 0 prediction 0.905164609959359 Functional Loss - PAX7 ENSG00000009709 CDS Human protein_coding chr1:18960982 chr1:18960982 nonsynonymous SNV 0.990 5 21 hm5C_associated_SNPs_49423 0 0 0 0 0 exosome 0.500231643921092 0 0.8979986 0.000463287842184856 hm5C_site_4743 DeepMRMD:0.8979986;iRNA_m5C:0.000463287842184856 4744 chr3 16346702 16346702 1 + C T rs114879427 16346702 + 16346682 16346722 41 TAACTGGTGAAGGCAGTCTGCGGGGGAGGACACCTAAAGGT TAACTGGTGAAGGCAGTCTGTGGGGGAGGACACCTAAAGGT Direct Loss 0.952576874062315 0 0.9115735 0 prediction 0.90515374812463 Functional Loss - OXNAD1 ENSG00000154814 UTR3 Human protein_coding chr3:16346702 chr3:16346702 . . 0 21 hm5C_associated_SNPs_49424 0 0 1 0 0 Ribosome 0.500231643921059 0 0.823147 0.000463287842118687 hm5C_site_4744 DeepMRMD:0.823147;iRNA_m5C:0.000463287842118687 4745 chr5 157161639 157161639 1 + C T UCEC 157161639 + 157161619 157161659 41 CCAGCTATGTGTTTTATTGGCGGGATTACTTTGAGGACCAG CCAGCTATGTGTTTTATTGGTGGGATTACTTTGAGGACCAG Direct Loss 0.95256028825452 0 0.89987636 0 prediction 0.90512057650904 Functional Loss - THG1L ENSG00000113272;ENSG00000268432 CDS Human other chr5:157161639 chr5:157161639 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49425 0 0 1 0 1 Nucleus 0.500231643921075 0 0.79975272 0.000463287842149551 hm5C_site_4745 DeepMRMD:0.79975272;iRNA_m5C:0.000463287842149551 4746 chrX 101382207 101382207 1 + C A LUAD 101382207 + 101382187 101382227 41 CCAGCTGAGGATGATATACCCAGGAAAGCCAAAAGAAAAAC CCAGCTGAGGATGATATACCAAGGAAAGCCAAAAGAAAAAC Direct Loss 0.952555626100135 0 0.8872366 0 prediction 0.90511125220027 Functional Loss - TCEAL2 ENSG00000184905 CDS Human protein_coding chrX:101382207 chrX:101382207 synonymous SNV . 0 21 hm5C_associated_SNPs_49426 0 0 1 0 0 exosome 0.500231643920348 0 0.7744732 0.000463287840695825 hm5C_site_4746 DeepMRMD:0.7744732;iRNA_m5C:0.000463287840695825 4747 chr4 175896737 175896737 1 + C A BLCA 175896737 + 175896717 175896757 41 TGTCCTGTTCTGGACACATCCAGGATGAGCACCCCCAATAT TGTCCTGTTCTGGACACATCAAGGATGAGCACCCCCAATAT Direct Loss 0.952550661883353 0 0.7641957 0 prediction 0.905101323766705 Functional Loss - ADAM29 ENSG00000168594 CDS Human protein_coding chr4:175896737 chr4:175896737 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49427 0 0 0 0 0 exosome 0.500236356183892 0 0.5283914 0.000472712367784789 hm5C_site_4747 DeepMRMD:0.5283914;iRNA_m5C:0.000472712367784789 4748 chr14 104199060 104199060 1 + C T STAD 104199060 + 104199040 104199080 41 GTGGAGGACGTGACTGTGGGCAGGAGGCAGGCGGTGGCGTG GTGGAGGACGTGACTGTGGGTAGGAGGCAGGCGGTGGCGTG Direct Loss 0.952521343892261 0 0.8819536 0 prediction 0.905042687784521 Functional Loss - ZFYVE21 ENSG00000100711 CDS Human protein_coding chr14:104199060 chr14:104199060 synonymous SNV . 0 21 hm5C_associated_SNPs_49428 0 0 1 0 1 Ribosome 0.500231643921092 0 0.7639072 0.000463287842184856 hm5C_site_4748 DeepMRMD:0.7639072;iRNA_m5C:0.000463287842184856 4749 chr13 88329002 88329002 1 + C T BLCA 88329002 + 88328982 88329022 41 ATGATCCAGGACCGCGCTTTCGGGGATCTCACCAACCTGAG ATGATCCAGGACCGCGCTTTTGGGGATCTCACCAACCTGAG Direct Loss 0.952520603962522 0 0.9586992 0 prediction 0.905041207925043 Functional Loss - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88329002 chr13:88329002 synonymous SNV . 0 21 hm5C_associated_SNPs_49429 0 0 1 0 0 nucleus 0.500231643923105 0 0.9173984 0.000463287846210969 hm5C_site_4749 DeepMRMD:0.9173984;iRNA_m5C:0.000463287846210969 4750 chr16 30199820 30199820 1 + C T HNSC 30199820 + 30199800 30199840 41 GCTACGTACCCCCAAAGAGCCGGGAGCTGAGGGTCAACCGG GCTACGTACCCCCAAAGAGCTGGGAGCTGAGGGTCAACCGG Direct Loss 0.952518665128641 0 0.95748377 0 prediction 0.905037330257282 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199820 chr16:30199820 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_49430 0 0 0 0 1 Cytosol 0.500231643921092 0 0.91496754 0.000463287842184856 hm5C_site_4750 DeepMRMD:0.91496754;iRNA_m5C:0.000463287842184856 4751 chr12 49745462 49745462 1 + C T rs368793002 49745462 + 49745442 49745482 41 AGGCCGAGGCGGGCAGATCACGAGGTCAGGAGTTCGAGACC AGGCCGAGGCGGGCAGATCATGAGGTCAGGAGTTCGAGACC Direct Loss 0.952515386440014 0 0.94129175 0 prediction 0.905030772880027 Functional Loss - DNAJC22 ENSG00000178401 UTR3 Human protein_coding chr12:49745462 chr12:49745462 . . 0 21 hm5C_associated_SNPs_49431 0 0 0 1 0 Ribosome 0.500231643692819 0 0.8825835 0.0004632873856385 hm5C_site_4751 DeepMRMD:0.8825835;iRNA_m5C:0.0004632873856385 4752 chr12 52284460 52284460 1 + C T COAD 52284460 + 52284440 52284480 41 TCGACACCGTGTGGAGGATTCGGCAGCTGCTGAGGCGGCCC TCGACACCGTGTGGAGGATTTGGCAGCTGCTGAGGCGGCCC Direct Loss 0.95249608935212 0 0.7721658 0 prediction 0.90499217870424 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52284460 chr12:52284460 nonsynonymous SNV 0.881 4 21 hm5C_associated_SNPs_49432 0 0 0 0 1 unknown 0.500231546977599 0 0.5443316 0.000463093955197058 hm5C_site_4752 DeepMRMD:0.5443316;iRNA_m5C:0.000463093955197058 4753 chr15 22743302 22743302 1 + C T UCEC 22743302 + 22743282 22743322 41 AGGAAGAGAAGATGCAAGAACAGGAGAAGATGCGGAGGCAG AGGAAGAGAAGATGCAAGAATAGGAGAAGATGCGGAGGCAG Direct Loss 0.9524720695227 0 0.90173554 0 prediction 0.904944139045399 Functional Loss - GOLGA6L1;GOLGA6L22 ENSG00000197414 CDS Human other chr15:22743302 chr15:22743302 stopgain 0.000 0 21 hm5C_associated_SNPs_49433 0 0 0 0 0 unknown 0.500231625057991 0 0.80347108 0.000463250115982028 hm5C_site_4753 DeepMRMD:0.80347108;iRNA_m5C:0.000463250115982028 4754 chr19 855638 855638 1 + C A rs146878885 855638 + 855618 855658 41 CAGGGACGCCGCCTGGGCAACGGGGTGCAGTGCCTGGCCAT CAGGGACGCCGCCTGGGCAAAGGGGTGCAGTGCCTGGCCAT Direct Loss 0.952453279964861 0 0.9143367 0 prediction 0.904906559929723 Functional Loss - ELANE ENSG00000197561 CDS Human protein_coding chr19:855638 chr19:855638 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49434 0 0 0 0 1 exosome 0.500231643921092 0 0.8286734 0.000463287842184856 hm5C_site_4754 DeepMRMD:0.8286734;iRNA_m5C:0.000463287842184856 4755 chr2 242814085 242814085 1 + C T GBM 242814085 + 242814065 242814105 41 CACATCCTGCAGGACTGCTACGGGGATGGCCCCGGCCCAGC CACATCCTGCAGGACTGCTATGGGGATGGCCCCGGCCCAGC Direct Loss 0.952448846263962 0 0.91438055 0 prediction 0.904897692527924 Functional Loss - RTP5 ENSG00000188011 CDS Human protein_coding chr2:242814085 chr2:242814085 synonymous SNV . 0 21 hm5C_associated_SNPs_49435 0 0 0 0 0 exosome 0.500231643921092 0 0.8287611 0.000463287842184856 hm5C_site_4755 DeepMRMD:0.8287611;iRNA_m5C:0.000463287842184856 4756 chr5 131705431 131705431 1 + C G rs4646300 131705431 + 131705411 131705451 41 GGCGCCGCTCTGCCTGCCAGCGGGGCGCGCCTTGCGGCCCA GGCGCCGCTCTGCCTGCCAGGGGGGCGCGCCTTGCGGCCCA Direct Loss 0.952442515650497 0 0.9472631 0 prediction 0.904885031300994 Functional Loss - MIR3936HG ENSG00000233006 ncRNA_intronic Human processed_transcript chr5:131705431 chr5:131705431 . . 0 21 hm5C_associated_SNPs_49436 0 0 0 0 0 unknown 0.50023164392085 0 0.8945262 0.000463287841700355 hm5C_site_4756 DeepMRMD:0.8945262;iRNA_m5C:0.000463287841700355 4757 chr5 140517233 140517233 1 + C T PAAD 140517233 + 140517213 140517253 41 GGGCATCTGGTGGACGTGAGCGGCACCGGGACCCTATCCCA GGGCATCTGGTGGACGTGAGTGGCACCGGGACCCTATCCCA Direct Loss 0.952438844388734 0 0.8620783 0 prediction 0.904877688777469 Functional Loss - PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140517233 chr5:140517233 synonymous SNV . 0 21 hm5C_associated_SNPs_49437 0 0 0 0 0 Endoplasmic reticulum 0.500231643921087 0 0.7241566 0.000463287842174642 hm5C_site_4757 DeepMRMD:0.7241566;iRNA_m5C:0.000463287842174642 4758 chr13 40229938 40229938 1 + C T UCEC 40229938 + 40229918 40229958 41 GGCCTCAACAATGGGGCAGGCGGGACCTCGGCGACGACCTG GGCCTCAACAATGGGGCAGGTGGGACCTCGGCGACGACCTG Direct Loss 0.95243481492759 0 0.90435684 0 prediction 0.904869629855179 Functional Loss - COG6 ENSG00000133103 CDS Human protein_coding chr13:40229938 chr13:40229938 synonymous SNV . 0 21 hm5C_associated_SNPs_49438 0 0 1 0 1 chromatin 0.500231641996583 0 0.80871368 0.000463283993166863 hm5C_site_4758 DeepMRMD:0.80871368;iRNA_m5C:0.000463283993166863 4759 chr3 3168838 3168838 1 + C T rs533520859 3168838 + 3168818 3168858 41 TGGGCAAAATAGCCCCGACGCGGAGGTCGTGTCCCCGCCAC TGGGCAAAATAGCCCCGACGTGGAGGTCGTGTCCCCGCCAC Direct Loss 0.952432604469604 0 0.90770495 0 prediction 0.904865208939208 Functional Loss - TRNT1 ENSG00000072756 UTR5 Human protein_coding chr3:3168838 chr3:3168838 . . 0 21 hm5C_associated_SNPs_49439 0 0 0 0 0 Cytosol 0.500231643921092 0 0.8154099 0.000463287842184856 hm5C_site_4759 DeepMRMD:0.8154099;iRNA_m5C:0.000463287842184856 4760 chr5 109221144 109221144 1 + C T rs538804688 109221144 + 109221124 109221164 41 CCTCAGCACCTGCTGGATCCCGGGGCCGCCCGCTCCCGCTC CCTCAGCACCTGCTGGATCCTGGGGCCGCCCGCTCCCGCTC Direct Loss 0.952429058861877 0 0.9259995 0 prediction 0.904858117723755 Functional Loss - LINC01848 ENSG00000253224;ENSG00000254106 upstream;downstream Human other chr5:109221144 chr5:109221144 . . 0 21 hm5C_associated_SNPs_49440 0 0 0 0 0 unknown 0.500231643920053 0 0.851999 0.000463287840106963 hm5C_site_4760 DeepMRMD:0.851999;iRNA_m5C:0.000463287840106963 4761 chr11 123777504 123777504 1 + C G LUSC 123777504 + 123777484 123777524 41 GCAGCCATGGCCTGCGATCGCTACGTGGCCATCTGCAGCCC GCAGCCATGGCCTGCGATCGGTACGTGGCCATCTGCAGCCC Direct Loss 0.952428075413521 0 0.078658104 0 prediction 0.904856150827043 Functional Loss - OR8D4 ENSG00000181518 CDS Human protein_coding chr11:123777504 chr11:123777504 synonymous SNV . 0 21 hm5C_associated_SNPs_49441 0 0 0 0 0 unknown 0.500231648203279 0 0 0.000463296406558289 hm5C_site_4761 DeepMRMD:0;iRNA_m5C:0.000463296406558289 4762 chr1 32050855 32050855 1 + C T CESC 32050855 + 32050835 32050875 41 GAGCCATGGGTCGGGGCAAGCGCCAGGCCACTGCCCACTGC GAGCCATGGGTCGGGGCAAGTGCCAGGCCACTGCCCACTGC Direct Loss 0.952419571673798 0 0.51428634 0 prediction 0.904839143347595 Functional Loss - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32050855 chr1:32050855 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49442 0 0 1 0 1 Ribosome 0.500231643922577 0 0.0285726799999999 0.000463287845153149 hm5C_site_4762 DeepMRMD:0.0285726799999999;iRNA_m5C:0.000463287845153149 4763 chr19 39589701 39589701 1 + C A STAD 39589701 + 39589681 39589721 41 GTCTGGCTGTGTTTGGAGACCTGGGGGCTGACAACCCGAAG GTCTGGCTGTGTTTGGAGACATGGGGGCTGACAACCCGAAG Direct Loss 0.95241613212144 0 0.87216306 0 prediction 0.90483226424288 Functional Loss - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39589701 chr19:39589701 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_49443 0 0 0 0 1 exosome 0.500231643921093 0 0.74432612 0.000463287842185078 hm5C_site_4763 DeepMRMD:0.74432612;iRNA_m5C:0.000463287842185078 4764 chr11 64068310 64068310 1 + C T rs2286614 64068310 + 64068290 64068330 41 GACCCGCGGGTGGCACAGCCCGGGGCGGGGCTCGTTGGACG GACCCGCGGGTGGCACAGCCTGGGGCGGGGCTCGTTGGACG Direct Loss 0.952382733657945 0 0.9112422 0 prediction 0.904765467315891 Functional Loss - CATSPERZ ENSG00000219435 CDS Human protein_coding chr11:64068310 chr11:64068310 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49444 0 0 0 0 0 unknown 0.500231645252127 0 0.8224844 0.000463290504253422 hm5C_site_4764 DeepMRMD:0.8224844;iRNA_m5C:0.000463290504253422 4765 chr2 85981598 85981598 1 + C A STAD 85981598 + 85981578 85981618 41 GCACGGACACAGCCGGGGAGCGCGGGGGCTCTCGGGCGCCC GCACGGACACAGCCGGGGAGAGCGGGGGCTCTCGGGCGCCC Direct Loss 0.952381947830427 0 0.9138055 0 prediction 0.904763895660855 Functional Loss - ATOH8 ENSG00000168874 CDS Human protein_coding chr2:85981598 chr2:85981598 nonsynonymous SNV 0.011 1 21 hm5C_associated_SNPs_49445 0 0 0 0 0 nucleus 0.500231643921123 0 0.827611 0.000463287842245919 hm5C_site_4765 DeepMRMD:0.827611;iRNA_m5C:0.000463287842245919 4766 chr22 19119087 19119087 1 + C T UCEC 19119087 + 19119067 19119107 41 TTGTGGAGAGATTCCTTCCTCGGGAGATGGACATCCTGGCA TTGTGGAGAGATTCCTTCCTTGGGAGATGGACATCCTGGCA Direct Loss 0.952375704541234 0 0.9273015 0 prediction 0.904751409082468 Functional Loss - TSSK2 ENSG00000206203 CDS Human protein_coding chr22:19119087 chr22:19119087 nonsynonymous SNV 0.982 5 21 hm5C_associated_SNPs_49446 0 0 0 0 0 exosome 0.500231644165885 0 0.854603 0.000463288331769007 hm5C_site_4766 DeepMRMD:0.854603;iRNA_m5C:0.000463288331769007 4767 chr19 55494485 55494485 1 + C T UCEC 55494485 + 55494465 55494505 41 CGAGAGGATCTGGAAAGGCTCGGGGTGCAGGAGTCCGACCT CGAGAGGATCTGGAAAGGCTTGGGGTGCAGGAGTCCGACCT Direct Loss 0.952369241721748 0 0.9310595 0 prediction 0.904738483443495 Functional Loss - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55494485 chr19:55494485 synonymous SNV . 0 21 hm5C_associated_SNPs_49447 0 0 0 0 0 Cytosol 0.500231643921092 0 0.862119 0.000463287842184856 hm5C_site_4767 DeepMRMD:0.862119;iRNA_m5C:0.000463287842184856 4768 chr2 223917638 223917638 1 + C A LUAD 223917638 + 223917618 223917658 41 CGTGCGGCCGGCGGCGGCAGCGGCAATGGCAACGAGTACTT CGTGCGGCCGGCGGCGGCAGAGGCAATGGCAACGAGTACTT Direct Loss 0.952359308699065 0 0.88027287 0 prediction 0.904718617398129 Functional Loss - KCNE4 ENSG00000152049 CDS Human protein_coding chr2:223917638 chr2:223917638 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49448 0 0 0 0 0 Nucleus 0.50023163748912 0 0.76054574 0.000463274978239392 hm5C_site_4768 DeepMRMD:0.76054574;iRNA_m5C:0.000463274978239392 4769 chr16 28962631 28962631 1 + C T rs564246714 28962631 + 28962611 28962651 41 AGGGGAGGACAGGCGGCCCGCAGGACCCCCGCGGGAGCCGG AGGGGAGGACAGGCGGCCCGTAGGACCCCCGCGGGAGCCGG Direct Loss 0.952345309236073 0 0.76679325 0 prediction 0.904690618472146 Functional Loss - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28962631 chr16:28962631 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_49449 0 0 1 0 1 Ribosome 0.500231643923495 0 0.5335865 0.000463287846989235 hm5C_site_4769 DeepMRMD:0.5335865;iRNA_m5C:0.000463287846989235 4770 chrX 120181839 120181839 1 + C T LUSC 120181839 + 120181819 120181859 41 GCGAGGAGCAGAAGCGGAACCGGGTGCGCGGCATCCTGCGG GCGAGGAGCAGAAGCGGAACTGGGTGCGCGGCATCCTGCGG Direct Loss 0.95233446212989 0 0.8926985 0 prediction 0.904668924259779 Functional Loss - GLUD2 ENSG00000182890 CDS Human protein_coding chrX:120181839 chrX:120181839 nonsynonymous SNV 0.401 3 21 hm5C_associated_SNPs_49450 0 0 0 0 0 Ribosome 0.500231643894028 0 0.785397 0.000463287788056599 hm5C_site_4770 DeepMRMD:0.785397;iRNA_m5C:0.000463287788056599 4771 chr15 75044539 75044539 1 + C A STAD 75044539 + 75044519 75044559 41 CCTACTTGGAGGCCTTCATCCTGGAGACCTTCCGACACTCC CCTACTTGGAGGCCTTCATCATGGAGACCTTCCGACACTCC Direct Loss 0.952332465530539 0 0.83441114 0 prediction 0.904664931061078 Functional Loss - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75044539 chr15:75044539 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49451 0 0 0 0 2 Nucleus 0.500231643921094 0 0.66882228 0.000463287842187965 hm5C_site_4771 DeepMRMD:0.66882228;iRNA_m5C:0.000463287842187965 4772 chr10 104678851 104678851 1 + C G LUSC 104678851 + 104678831 104678871 41 CGCCCTGGGCGCCGGCGGCTCGGGGTCCACGGGTGGCGCCG CGCCCTGGGCGCCGGCGGCTGGGGGTCCACGGGTGGCGCCG Direct Loss 0.952327109843535 0 0.9405045 0 prediction 0.90465421968707 Functional Loss - CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104678851 chr10:104678851 nonsynonymous SNV 0.754 1 21 hm5C_associated_SNPs_49452 0 0 0 0 0 Ribosome 0.500231643921351 0 0.881009 0.000463287842702664 hm5C_site_4772 DeepMRMD:0.881009;iRNA_m5C:0.000463287842702664 4773 chr11 71932097 71932097 1 + C T SKCM 71932097 + 71932077 71932117 41 CCAACCTGGGGCCCTGGATCCAGCAGGTAGGGTGTCTCCCC CCAACCTGGGGCCCTGGATCTAGCAGGTAGGGTGTCTCCCC Direct Loss 0.952325742787654 0 0.81651413 0 prediction 0.904651485575307 Functional Loss - FOLR2 ENSG00000165457 CDS Human protein_coding chr11:71932097 chr11:71932097 stopgain 0.955 0 21 hm5C_associated_SNPs_49453 0 0 0 0 1 Cytosol 0.500231643921092 0 0.63302826 0.000463287842184856 hm5C_site_4773 DeepMRMD:0.63302826;iRNA_m5C:0.000463287842184856 4774 chr1 22965844 22965844 1 + C T LUSC 22965844 + 22965824 22965864 41 CCAAAAAGGGTCACATTTACCAGGGCTCTGAGGCCGACAGC CCAAAAAGGGTCACATTTACTAGGGCTCTGAGGCCGACAGC Direct Loss 0.952317573397577 0 0.9241625 0 prediction 0.904635146795155 Functional Loss - C1QA ENSG00000173372 CDS Human protein_coding chr1:22965844 chr1:22965844 stopgain 0.537 0 21 hm5C_associated_SNPs_49454 0 0 0 0 0 exosome 0.500231643923919 0 0.848325 0.000463287847837446 hm5C_site_4774 DeepMRMD:0.848325;iRNA_m5C:0.000463287847837446 4775 chrX 79286015 79286015 1 + C T HNSC 79286015 + 79285995 79286035 41 AGGTGGAAGCAGTGGCTCATCTCCAGTGACCTCTAGTGGAG AGGTGGAAGCAGTGGCTCATTTCCAGTGACCTCTAGTGGAG Direct Loss 0.952307905840423 0 0.954785 0 prediction 0.904615811680847 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79286015 chrX:79286015 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_49455 0 0 0 0 1 unknown 0.500231644144222 0 0.90957 0.00046328828844433 hm5C_site_4775 DeepMRMD:0.90957;iRNA_m5C:0.00046328828844433 4776 chr1 32655677 32655677 1 + C T UCEC 32655677 + 32655657 32655697 41 AAGAAGGTGTGCAGCGGGCCCGGGAGGAGGAGGAGAAGCGC AAGAAGGTGTGCAGCGGGCCTGGGAGGAGGAGGAGAAGCGC Direct Loss 0.952295045406061 0 0.90292776 0 prediction 0.904590090812123 Functional Loss - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32655677 chr1:32655677 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_49456 0 0 1 0 1 Nucleus 0.500231670900998 0 0.80585552 0.000463341801996142 hm5C_site_4776 DeepMRMD:0.80585552;iRNA_m5C:0.000463341801996142 4777 chr19 4685757 4685757 1 + C A UCEC 4685757 + 4685737 4685777 41 CGTGTGGAAATGGAAGATCTCTGGAGGAACATAATCCGGGG CGTGTGGAAATGGAAGATCTATGGAGGAACATAATCCGGGG Direct Loss 0.95228063510891 0 0.9359808 0 prediction 0.90456127021782 Functional Loss - DPP9 ENSG00000142002 CDS Human protein_coding chr19:4685757 chr19:4685757 stopgain 0.632 1 21 hm5C_associated_SNPs_49457 0 0 0 0 0 Cytosol 0.500231643763007 0 0.8719616 0.000463287526014877 hm5C_site_4777 DeepMRMD:0.8719616;iRNA_m5C:0.000463287526014877 4778 chr7 140380866 140380866 1 + C T ESCA 140380866 + 140380846 140380886 41 GTGTGCCTGTGTCCAGTTACCAGCAGGCAGGAATTCCCGTG GTGTGCCTGTGTCCAGTTACTAGCAGGCAGGAATTCCCGTG Direct Loss 0.952275030482351 0 0.43636814 0 prediction 0.904550060964702 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140380866 chr7:140380866 stopgain 1.000 1 21 hm5C_associated_SNPs_49458 0 0 1 0 2 Ribosome 0.500231643921104 0 0 0.000463287842207727 hm5C_site_4778 DeepMRMD:0;iRNA_m5C:0.000463287842207727 4779 chr16 25043329 25043329 1 + C T rs538752041 25043329 + 25043309 25043349 41 CAAGAAGCGCCTGTCGGGCGCGGGATTCGGGGCTGGCATCT CAAGAAGCGCCTGTCGGGCGTGGGATTCGGGGCTGGCATCT Direct Loss 0.952255753152383 0 0.93146 0 prediction 0.904511506304766 Functional Loss - LOC554206 ENSG00000262587 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:25043329 chr16:25043329 . . 0 21 hm5C_associated_SNPs_49459 0 0 0 0 0 unknown 0.500231643921093 0 0.86292 0.000463287842185078 hm5C_site_4779 DeepMRMD:0.86292;iRNA_m5C:0.000463287842185078 4780 chr17 80525974 80525974 1 + C A BLCA 80525974 + 80525954 80525994 41 CCCCCGGGGAGCGGGGTCTTCAGGGTACAAGGTGGGCCGAG CCCCCGGGGAGCGGGGTCTTAAGGGTACAAGGTGGGCCGAG Direct Loss 0.952250688719019 0 0.9392226 0 prediction 0.904501377438038 Functional Loss - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80525974 chr17:80525974 stopgain 0.998 1 21 hm5C_associated_SNPs_49460 0 0 1 0 1 Cytosol 0.500231643921092 0 0.8784452 0.000463287842184856 hm5C_site_4780 DeepMRMD:0.8784452;iRNA_m5C:0.000463287842184856 4781 chr22 43435822 43435822 1 + G A LUSC 43435822 - 43435802 43435842 41 GGGGCCCAGAGCAGGCCGATCGAGAGACTCGGGGAGAGCGG GGGGCCCAGAGCAGGCCGATTGAGAGACTCGGGGAGAGCGG Direct Loss 0.952233830513521 0 0.9216577 0 prediction 0.904467661027041 Functional Loss - TTLL1 ENSG00000100271 CDS Human protein_coding chr22:43435822 chr22:43435822 nonsynonymous SNV 0.030 0 21 hm5C_associated_SNPs_49461 0 0 0 0 1 Nucleus 0.500231646373412 0 0.8433154 0.00046329274682444 hm5C_site_4781 DeepMRMD:0.8433154;iRNA_m5C:0.00046329274682444 4782 chr1 152748869 152748869 1 + C A LIHC 152748869 + 152748849 152748889 41 TGTCTTGCCAGCAGAGCCAGCAGCAGTGCCAGCCCCCTCCC TGTCTTGCCAGCAGAGCCAGAAGCAGTGCCAGCCCCCTCCC Direct Loss 0.952228220244184 0 0.43804398 0 prediction 0.904456440488369 Functional Loss - LCE1F ENSG00000240386 CDS Human protein_coding chr1:152748869 chr1:152748869 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_49462 0 0 0 0 0 unknown 0.50023164392361 0 0 0.000463287847219496 hm5C_site_4782 DeepMRMD:0;iRNA_m5C:0.000463287847219496 4783 chr5 129243933 129243933 1 + C T SKCM 129243933 + 129243913 129243953 41 ATCTTTAGCCGAGAAGTTCTCAGGAGGATGGTGCCACATAT ATCTTTAGCCGAGAAGTTCTTAGGAGGATGGTGCCACATAT Direct Loss 0.952227625276561 0 0.9246464 0 prediction 0.904455250553122 Functional Loss - CHSY3 ENSG00000198108 CDS Human protein_coding chr5:129243933 chr5:129243933 synonymous SNV . 0 21 hm5C_associated_SNPs_49463 0 0 0 0 0 exosome 0.500231643921639 0 0.8492928 0.000463287843278426 hm5C_site_4783 DeepMRMD:0.8492928;iRNA_m5C:0.000463287843278426 4784 chr17 21075495 21075495 1 + C G LUAD 21075495 + 21075475 21075515 41 GGTGATCACAGGCGCCACCTCAGGGCTGGGCAAAGGTGGGT GGTGATCACAGGCGCCACCTGAGGGCTGGGCAAAGGTGGGT Direct Loss 0.952225873008509 0 0.9105354 0 prediction 0.904451746017018 Functional Loss - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21075495 chr17:21075495 stopgain 0.870 1 21 hm5C_associated_SNPs_49464 0 0 1 0 1 Endoplasmic reticulum 0.500231643921093 0 0.8210708 0.000463287842185522 hm5C_site_4784 DeepMRMD:0.8210708;iRNA_m5C:0.000463287842185522 4785 chr6 117246757 117246757 1 + C A LUAD 117246757 + 117246737 117246777 41 CCCTCTGCCATCCAGTCAACCTGGAGGCCTAGGCCCTGCTC CCCTCTGCCATCCAGTCAACATGGAGGCCTAGGCCCTGCTC Direct Loss 0.952222037353852 0 0.8027566 0 prediction 0.904444074707705 Functional Loss - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117246757 chr6:117246757 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_49465 0 0 0 0 1 membrane 0.500231809508173 0 0.6055132 0.000463619016346506 hm5C_site_4785 DeepMRMD:0.6055132;iRNA_m5C:0.000463619016346506 4786 chr22 18604277 18604277 1 + C T UCEC 18604277 + 18604257 18604297 41 ATCAGTCCACGTGGGCCAAGCGGGAGTTCAGATTGGCAATG ATCAGTCCACGTGGGCCAAGTGGGAGTTCAGATTGGCAATG Direct Loss 0.95221875904921 0 0.89238745 0 prediction 0.904437518098421 Functional Loss - TUBA8 ENSG00000183785;ENSG00000215193 CDS Human other chr22:18604277 chr22:18604277 nonsynonymous SNV 0.978 4 21 hm5C_associated_SNPs_49466 0 0 0 0 1 exosome 0.50030542000932 0 0.7847749 0.000610840018640646 hm5C_site_4786 DeepMRMD:0.7847749;iRNA_m5C:0.000610840018640646 4787 chr1 32090604 32090604 1 + C A COAD 32090604 + 32090584 32090624 41 CACCCTGGGCCTAGGGTGTTCGGGATGTTCCGCCAAGCCAG CACCCTGGGCCTAGGGTGTTAGGGATGTTCCGCCAAGCCAG Direct Loss 0.952180679411374 0 0.92694265 0 prediction 0.904361358822748 Functional Loss - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32090604 chr1:32090604 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_49467 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8538853 0.000463287842184856 hm5C_site_4787 DeepMRMD:0.8538853;iRNA_m5C:0.000463287842184856 4788 chr17 7324787 7324787 1 + C T SKCM 7324787 + 7324767 7324807 41 GCCGAATAGTGTATGATGCCCGGGACATGAGACGGCGGCTT GCCGAATAGTGTATGATGCCTGGGACATGAGACGGCGGCTT Direct Loss 0.952170647129482 0 0.72661334 0 prediction 0.904341294258963 Functional Loss - SPEM1 ENSG00000181323 CDS Human protein_coding chr17:7324787 chr17:7324787 nonsynonymous SNV 0.783 1 21 hm5C_associated_SNPs_49468 0 0 0 0 0 exosome 0.500231643950045 0 0.45322668 0.000463287900089204 hm5C_site_4788 DeepMRMD:0.45322668;iRNA_m5C:0.000463287900089204 4789 chr14 23848306 23848306 1 + C A STAD 23848306 + 23848286 23848326 41 CCTTTGCAGCTGTGACCTCCCGGGACGGAGCTGCCATTGCT CCTTTGCAGCTGTGACCTCCAGGGACGGAGCTGCCATTGCT Direct Loss 0.952170063192491 0 0.92807007 0 prediction 0.904340126384982 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848306 chr14:23848306 synonymous SNV . 0 21 hm5C_associated_SNPs_49469 0 0 0 0 2 exosome 0.500231643921093 0 0.85614014 0.000463287842185078 hm5C_site_4789 DeepMRMD:0.85614014;iRNA_m5C:0.000463287842185078 4790 chr3 150127539 150127539 1 + C G rs61734436 150127539 + 150127519 150127559 41 GCCCCCGCCCCCGGAGCACCCGGCGGCCCCCAGCTCGCGGG GCCCCCGCCCCCGGAGCACCGGGCGGCCCCCAGCTCGCGGG Direct Loss 0.952161830596648 0 0.5668564 0 prediction 0.904323661193295 Functional Loss - TSC22D2 ENSG00000196428 CDS Human protein_coding chr3:150127539 chr3:150127539 synonymous SNV . 0 21 hm5C_associated_SNPs_49470 0 0 1 0 0 Ribosome 0.500231643921092 0 0.1337128 0.000463287842184856 hm5C_site_4790 DeepMRMD:0.1337128;iRNA_m5C:0.000463287842184856 4791 chr11 59860922 59860922 1 + C T rs35033981 59860922 + 59860902 59860942 41 CAGCAGCATAGCTGGGGGAACGGGAATTACCATCCTGATCA CAGCAGCATAGCTGGGGGAATGGGAATTACCATCCTGATCA Direct Loss 0.952157540465749 0 0.8988538 0 prediction 0.904315080931499 Functional Loss - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59860922 chr11:59860922 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49471 0 0 0 0 1 exosome 0.500231642566565 0 0.7977076 0.000463285133129654 hm5C_site_4791 DeepMRMD:0.7977076;iRNA_m5C:0.000463285133129654 4792 chrX 55102526 55102526 1 + C A UCEC 55102526 + 55102506 55102546 41 CCTCAGAAAGAGGAAATGACCAAGAGTCTTCCCAGCCAGTT CCTCAGAAAGAGGAAATGACAAAGAGTCTTCCCAGCCAGTT Direct Loss 0.952157526174247 0 0.4449398 0 prediction 0.904315052348494 Functional Loss - PAGE2B ENSG00000238269 CDS Human protein_coding chrX:55102526 chrX:55102526 nonsynonymous SNV 0.013 0 21 hm5C_associated_SNPs_49472 0 0 0 0 1 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4792 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4793 chr21 45213238 45213238 1 + C T HNSC 45213238 + 45213218 45213258 41 CCTTCTGGCAGACCATGAATCGCGAGTGGACGGGCATTGAC CCTTCTGGCAGACCATGAATTGCGAGTGGACGGGCATTGAC Direct Loss 0.952134512165486 0 0.9246253 0 prediction 0.904269024330971 Functional Loss - RRP1 ENSG00000160214 CDS Human protein_coding chr21:45213238 chr21:45213238 nonsynonymous SNV 0.409 3 21 hm5C_associated_SNPs_49473 0 0 1 0 2 Ribosome 0.499431512565461 0 0.8492506 0 hm5C_site_4793 DeepMRMD:0.8492506;iRNA_m5C:0 4794 chr1 47904553 47904553 1 + C T COAD 47904553 + 47904533 47904573 41 GCTGCGTGGCGGGGCCGCGGCGGCGGGGGATCCCGGCGCTT GCTGCGTGGCGGGGCCGCGGTGGCGGGGGATCCCGGCGCTT Direct Loss 0.95212990956605 0 0.93355596 0 prediction 0.9042598191321 Functional Loss - FOXD2 ENSG00000186564 CDS Human protein_coding chr1:47904553 chr1:47904553 nonsynonymous SNV 0.983 2 21 hm5C_associated_SNPs_49474 0 0 0 0 0 chromatin 0.500231643922249 0 0.86711192 0.000463287844498561 hm5C_site_4794 DeepMRMD:0.86711192;iRNA_m5C:0.000463287844498561 4795 chr7 99817846 99817846 1 + C T rs28444266 99817846 + 99817826 99817866 41 ATCTCCCTGGTGACTGTGAGCTGGGGGGGCCCCAACGGTGC ATCTCCCTGGTGACTGTGAGTTGGGGGGGCCCCAACGGTGC Direct Loss 0.952127942957319 0 0.91895455 0 prediction 0.904255885914637 Functional Loss - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99817846 chr7:99817846 synonymous SNV . 0 21 hm5C_associated_SNPs_49475 0 0 0 0 0 exosome 0.500231643921086 0 0.8379091 0.000463287842171756 hm5C_site_4795 DeepMRMD:0.8379091;iRNA_m5C:0.000463287842171756 4796 chr13 46287686 46287686 1 + C T THYM 46287686 + 46287666 46287706 41 AGGAGGAGAACAAGTCTCTGCGGGAGGAGAACAAGGCCCTG AGGAGGAGAACAAGTCTCTGTGGGAGGAGAACAAGGCCCTG Direct Loss 0.95211855202698 0 0.89713395 0 prediction 0.904237104053959 Functional Loss - SPERT ENSG00000174015 CDS Human protein_coding chr13:46287686 chr13:46287686 nonsynonymous SNV 0.816 2 21 hm5C_associated_SNPs_49476 0 0 0 0 0 exosome 0.500231643921093 0 0.7942679 0.000463287842185078 hm5C_site_4796 DeepMRMD:0.7942679;iRNA_m5C:0.000463287842185078 4797 chr11 61249334 61249334 1 + C T UCEC 61249334 + 61249314 61249354 41 CCCTTATGTGAAGATGAGTTCGGGGGGCTACACGGACCCCC CCCTTATGTGAAGATGAGTTTGGGGGGCTACACGGACCCCC Direct Loss 0.95211692380144 0 0.94674057 0 prediction 0.904233847602881 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249334 chr11:61249334 nonsynonymous SNV 0.979 2 21 hm5C_associated_SNPs_49477 0 0 0 0 2 exosome 0.500231643921092 0 0.89348114 0.000463287842184856 hm5C_site_4797 DeepMRMD:0.89348114;iRNA_m5C:0.000463287842184856 4798 chr2 170607585 170607585 1 + C G rs538169308 170607585 + 170607565 170607605 41 ACTGCAAATCACAGACAGGCCTAGATACAGATCCCCTCACC ACTGCAAATCACAGACAGGCGTAGATACAGATCCCCTCACC Direct Loss 0.95211223656933 0 0.14025396 0 prediction 0.904224473138659 Functional Loss - KLHL23;PHOSPHO2-KLHL23 ENSG00000213160 UTR3 Human protein_coding chr2:170607585 chr2:170607585 . . 0 21 hm5C_associated_SNPs_49478 0 0 1 0 0 unknown 0.50023166237031 0 0 0.000463324740620275 hm5C_site_4798 DeepMRMD:0;iRNA_m5C:0.000463324740620275 4799 chr5 132150192 132150192 1 + C G rs562266890 132150192 + 132150172 132150212 41 CGTCTGCTGAGCCCTGACGCCGAGGAGTTGCCCGCCGCGCC CGTCTGCTGAGCCCTGACGCGGAGGAGTTGCCCGCCGCGCC Direct Loss 0.952094412054169 0 0.9246446 0 prediction 0.904188824108338 Functional Loss - SOWAHA ENSG00000198944 CDS Human protein_coding chr5:132150192 chr5:132150192 synonymous SNV . 0 21 hm5C_associated_SNPs_49479 0 0 0 0 0 exosome 0.500231644738727 0 0.8492892 0.00046328947745411 hm5C_site_4799 DeepMRMD:0.8492892;iRNA_m5C:0.00046328947745411 4800 chr16 67861873 67861873 1 + C G HNSC 67861873 + 67861853 67861893 41 ACATCAGGCGTGTGGGACCTCGAGAGCCAGAGCCTGCAAGC ACATCAGGCGTGTGGGACCTGGAGAGCCAGAGCCTGCAAGC Direct Loss 0.952093098000511 0 0.84765375 0 prediction 0.904186196001022 Functional Loss - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67861873 chr16:67861873 nonsynonymous SNV 0.356 3 21 hm5C_associated_SNPs_49480 0 0 0 1 0 exosome 0.500229302364256 0 0.6953075 0.000458604728512002 hm5C_site_4800 DeepMRMD:0.6953075;iRNA_m5C:0.000458604728512002 4801 chr1 26517266 26517266 1 + C T SKCM 26517266 + 26517246 26517286 41 CTCCCCTGCAGAGTACCATTCACGAGTCCTACGGTCGGCCA CTCCCCTGCAGAGTACCATTTACGAGTCCTACGGTCGGCCA Direct Loss 0.952089232315166 0 0.53232974 0 prediction 0.904178464630331 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26517266 chr1:26517266 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_49481 0 0 0 0 1 exosome 0.500231629003114 0 0.06465948 0.000463258006227374 hm5C_site_4801 DeepMRMD:0.06465948;iRNA_m5C:0.000463258006227374 4802 chr6 160328630 160328630 1 + C T rs373003570 160328630 + 160328610 160328650 41 CCATCTTGGTCGTGAAGATCCGGAAGAACACGTGGGCTTCC CCATCTTGGTCGTGAAGATCTGGAAGAACACGTGGGCTTCC Direct Loss 0.952079953837648 0 0.9096676 0 prediction 0.904159907675296 Functional Loss - MAS1 ENSG00000130368 CDS Human protein_coding chr6:160328630 chr6:160328630 nonsynonymous SNV 0.983 0 21 hm5C_associated_SNPs_49482 0 0 0 0 0 exosome 0.50023164505533 0 0.8193352 0.000463290110660486 hm5C_site_4802 DeepMRMD:0.8193352;iRNA_m5C:0.000463290110660486 4803 chr5 121187822 121187822 1 + C T SKCM 121187822 + 121187802 121187842 41 CCTGGCCGCAGCCGCCTCCTCCCGGGACCCTACCGGGCCCG CCTGGCCGCAGCCGCCTCCTTCCGGGACCCTACCGGGCCCG Direct Loss 0.952073475750899 0 0.9143568 0 prediction 0.904146951501797 Functional Loss - FTMT ENSG00000181867 CDS Human protein_coding chr5:121187822 chr5:121187822 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49483 0 0 0 0 0 unknown 0.500231643912894 0 0.8287136 0.000463287825787972 hm5C_site_4803 DeepMRMD:0.8287136;iRNA_m5C:0.000463287825787972 4804 chr19 39691093 39691093 1 + C T SKCM 39691093 + 39691073 39691113 41 CCACGTGGCCCCCCGAACTTCTGGGAGAGGACCCCCTGGCC CCACGTGGCCCCCCGAACTTTTGGGAGAGGACCCCCTGGCC Direct Loss 0.952063864779536 0 0.8354922 0 prediction 0.904127729559071 Functional Loss - NCCRP1 ENSG00000188505 CDS Human protein_coding chr19:39691093 chr19:39691093 nonsynonymous SNV 0.080 0 21 hm5C_associated_SNPs_49484 0 0 0 0 1 exosome 0.500231643921092 0 0.6709844 0.000463287842184634 hm5C_site_4804 DeepMRMD:0.6709844;iRNA_m5C:0.000463287842184634 4805 chr2 219000421 219000421 1 + C T HNSC 219000421 + 219000401 219000441 41 GACCGGGCTCTGGATGCCACCGAGATTCTGGGCATCCTTCA GACCGGGCTCTGGATGCCACTGAGATTCTGGGCATCCTTCA Direct Loss 0.952057631116897 0 0.28856164 0 prediction 0.904115262233793 Functional Loss - CXCR2 ENSG00000180871 CDS Human protein_coding chr2:219000421 chr2:219000421 synonymous SNV . 0 21 hm5C_associated_SNPs_49485 0 0 0 0 0 exosome 0.500231643921001 0 0 0.00046328784200167 hm5C_site_4805 DeepMRMD:0;iRNA_m5C:0.00046328784200167 4806 chrX 153994567 153994567 1 + C T UCEC 153994567 + 153994547 153994587 41 CCTGGATTCGACGGATACTTCGGGTGGAGAAGACAGGGCAC CCTGGATTCGACGGATACTTTGGGTGGAGAAGACAGGGCAC Direct Loss 0.952055747006441 0 0.92825544 0 prediction 0.904111494012881 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:153994567 chrX:153994567 nonsynonymous SNV 0.722 5 21 hm5C_associated_SNPs_49486 0 0 1 0 1 Cytosol 0.500231643921092 0 0.85651088 0.000463287842184856 hm5C_site_4806 DeepMRMD:0.85651088;iRNA_m5C:0.000463287842184856 Multiple complex diseases 4807 chr19 42813971 42813971 1 + C A LUSC 42813971 + 42813951 42813991 41 AGCACCGGGGTCTCTTCAACCACGAGGTGAAATCCCTAGAT AGCACCGGGGTCTCTTCAACAACGAGGTGAAATCCCTAGAT Direct Loss 0.952052788644016 0 0.8781276 0 prediction 0.904105577288033 Functional Loss - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42813971 chr19:42813971 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_49487 0 0 0 0 0 exosome 0.500231643921092 0 0.7562552 0.000463287842184856 hm5C_site_4807 DeepMRMD:0.7562552;iRNA_m5C:0.000463287842184856 4808 chr11 7110571 7110571 1 + C T COAD 7110571 + 7110551 7110591 41 GAGACATGAACGGCAAGTCCCTGGATGGTAAGGCCATCAAG GAGACATGAACGGCAAGTCCTTGGATGGTAAGGCCATCAAG Direct Loss 0.952045160437004 0 0.7012522 0 prediction 0.904090320874008 Functional Loss - RBMXL2 ENSG00000170748 CDS Human protein_coding chr11:7110571 chr11:7110571 synonymous SNV . 0 21 hm5C_associated_SNPs_49488 0 0 0 0 0 exosome 0.500231642613228 0 0.4025044 0.000463285226457 hm5C_site_4808 DeepMRMD:0.4025044;iRNA_m5C:0.000463285226457 4809 chr18 8783852 8783852 1 + C T UCEC 8783852 + 8783832 8783872 41 ACATGCGGGGCCAGCAGGAGCGGGAGGGCCCGGGTCGGGAC ACATGCGGGGCCAGCAGGAGTGGGAGGGCCCGGGTCGGGAC Direct Loss 0.952043614708724 0 0.92084706 0 prediction 0.904087229417448 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8783852 chr18:8783852 nonsynonymous SNV 0.015 3 21 hm5C_associated_SNPs_49489 0 0 1 0 0 Nucleus 0.500231643886753 0 0.84169412 0.000463287773505794 hm5C_site_4809 DeepMRMD:0.84169412;iRNA_m5C:0.000463287773505794 4810 chr13 64313474 64313474 1 + C A rs532370988 64313474 + 64313454 64313494 41 GGCTCTCAATCCCCGCCTCGCGGGGGTGCCTCCCCCAGGTG GGCTCTCAATCCCCGCCTCGAGGGGGTGCCTCCCCCAGGTG Direct Loss 0.95203478602388 0 0.96236193 0 prediction 0.904069572047759 Functional Loss - OR7E156P ENSG00000231061;ENSG00000215430 intergenic Human other chr13:64313474 chr13:64313474 . . 0 21 hm5C_associated_SNPs_49490 0 0 0 0 0 unknown 0.500231643921092 0 0.92472386 0.000463287842184856 hm5C_site_4810 DeepMRMD:0.92472386;iRNA_m5C:0.000463287842184856 4811 chr7 150069766 150069766 1 + G A PRAD 150069766 - 150069746 150069786 41 GCTTCTCGCCGGTGTGGATGCGCCGGTGCGCCGCCAGGTAG GCTTCTCGCCGGTGTGGATGTGCCGGTGCGCCGCCAGGTAG Direct Loss 0.952016710124616 0 0.35699207 0 prediction 0.904033420249232 Functional Loss - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150069766 chr7:150069766 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_49491 0 0 0 0 0 Endoplasmic reticulum 0.500231592000373 0 0 0.000463184000746519 hm5C_site_4811 DeepMRMD:0;iRNA_m5C:0.000463184000746519 4812 chr2 106497816 106497816 1 + C T UCEC 106497816 + 106497796 106497836 41 CGCGCAGGAAGACCAGCGCGCGGGATGCGTCCCCCACGCCC CGCGCAGGAAGACCAGCGCGTGGGATGCGTCCCCCACGCCC Direct Loss 0.95199663577078 0 0.9540899 0 prediction 0.90399327154156 Functional Loss - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106497816 chr2:106497816 nonsynonymous SNV 0.596 3 21 hm5C_associated_SNPs_49492 0 0 0 0 1 Ribosome 0.500231643160618 0 0.9081798 0.000463286321236378 hm5C_site_4812 DeepMRMD:0.9081798;iRNA_m5C:0.000463286321236378 4813 chr15 102345981 102345981 1 + C T COAD 102345981 + 102345961 102346001 41 GTTCCTGGGACTCTCTGACTCGCGGAAGATCCAGCTCCTCC GTTCCTGGGACTCTCTGACTTGCGGAAGATCCAGCTCCTCC Direct Loss 0.951984157326437 0 0.36881894 0 prediction 0.903968314652875 Functional Loss - OR4F6 ENSG00000184140 CDS Human protein_coding chr15:102345981 chr15:102345981 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_49493 0 0 0 0 0 unknown 0.500231642669918 0 0 0.000463285339835862 hm5C_site_4813 DeepMRMD:0;iRNA_m5C:0.000463285339835862 4814 chr15 102345983 102345983 1 + C T BRCA 102345983 + 102345963 102346003 41 TCCTGGGACTCTCTGACTCGCGGAAGATCCAGCTCCTCCTC TCCTGGGACTCTCTGACTCGTGGAAGATCCAGCTCCTCCTC Direct Loss 0.951978940943303 0 0.929855 0 prediction 0.903957881886605 Functional Loss - OR4F6 ENSG00000184140 CDS Human protein_coding chr15:102345983 chr15:102345983 nonsynonymous SNV 0.154 0 21 hm5C_associated_SNPs_49494 0 0 0 0 0 unknown 0.500231643921179 0 0.85971 0.000463287842357163 hm5C_site_4814 DeepMRMD:0.85971;iRNA_m5C:0.000463287842357163 4815 chr2 238475717 238475717 1 + C T UCEC 238475717 + 238475697 238475737 41 GGCCTGTGGGCCGCTTCGGTCGGAGGAGGGCAACCCTGGGG GGCCTGTGGGCCGCTTCGGTTGGAGGAGGGCAACCCTGGGG Direct Loss 0.951966149649258 0 0.9479769 0 prediction 0.903932299298515 Functional Loss - PRLH ENSG00000071677 CDS Human protein_coding chr2:238475717 chr2:238475717 nonsynonymous SNV 0.921 3 21 hm5C_associated_SNPs_49495 0 0 0 0 1 unknown 0.500231643920997 0 0.8959538 0.000463287841993232 hm5C_site_4815 DeepMRMD:0.8959538;iRNA_m5C:0.000463287841993232 4816 chr13 108870813 108870813 1 + C T rs146810093 108870813 + 108870793 108870833 41 GAGCCGGCGGGGGCATTTGCCGGCGACACCCGAGCGGGGGC GAGCCGGCGGGGGCATTTGCTGGCGACACCCGAGCGGGGGC Direct Loss 0.951955029007029 0 0.92983645 0 prediction 0.903910058014057 Functional Loss - ABHD13 ENSG00000139826 UTR5 Human protein_coding chr13:108870813 chr13:108870813 . . 0 21 hm5C_associated_SNPs_49496 0 0 0 0 0 Cytosol 0.500231706887226 0 0.8596729 0.000463413774452803 hm5C_site_4816 DeepMRMD:0.8596729;iRNA_m5C:0.000463413774452803 4817 chr19 15793238 15793238 1 + C T rs144258147 15793238 + 15793218 15793258 41 CCTCAGAGGGCAGCAGTTGTCTGGACATGTTTGAGCACATC CCTCAGAGGGCAGCAGTTGTTTGGACATGTTTGAGCACATC Direct Loss 0.951951877674127 0 0.19307059 0 prediction 0.903903755348255 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15793238 chr19:15793238 synonymous SNV . 0 21 hm5C_associated_SNPs_49497 0 0 0 0 2 exosome 0.499073806818083 0 0 0 hm5C_site_4817 DeepMRMD:0;iRNA_m5C:0 4818 chr2 67624799 67624799 1 + C G rs76623705 67624799 + 67624779 67624819 41 CTGTGCAGTAAAAGTAACCCCGAGGGTGAGACGTCGGCAGC CTGTGCAGTAAAAGTAACCCGGAGGGTGAGACGTCGGCAGC Direct Loss 0.951942545927117 0 0.8947583 0 prediction 0.903885091854233 Functional Loss - ETAA1 ENSG00000143971 CDS Human protein_coding chr2:67624799 chr2:67624799 synonymous SNV . 0 21 hm5C_associated_SNPs_49498 0 0 1 0 0 nucleolus 0.500231643921092 0 0.7895166 0.000463287842184856 hm5C_site_4818 DeepMRMD:0.7895166;iRNA_m5C:0.000463287842184856 4819 chr9 22447589 22447589 1 + C G HNSC 22447589 + 22447569 22447609 41 GGTGGTCGGGCATCCGGGGGCGGCGGCAGAGCCGAGAATCC GGTGGTCGGGCATCCGGGGGGGGCGGCAGAGCCGAGAATCC Direct Loss 0.951928590367787 0 0.9117808 0 prediction 0.903857180735574 Functional Loss - DMRTA1 ENSG00000176399 CDS Human protein_coding chr9:22447589 chr9:22447589 synonymous SNV . 0 21 hm5C_associated_SNPs_49499 0 0 0 0 0 exosome 0.500231643964739 0 0.8235616 0.000463287929478584 hm5C_site_4819 DeepMRMD:0.8235616;iRNA_m5C:0.000463287929478584 4820 chr19 33635774 33635774 1 + C A LUAD 33635774 + 33635754 33635794 41 CGGTGGACGGTTCTGTGGTTCGCGATTTTGAGCACAGGCCC CGGTGGACGGTTCTGTGGTTAGCGATTTTGAGCACAGGCCC Direct Loss 0.951923377691791 0 0.20534402 0 prediction 0.903846755383583 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33635774 chr19:33635774 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_49500 0 0 0 0 2 exosome 0.500231643912671 0 0 0.000463287825341663 hm5C_site_4820 DeepMRMD:0;iRNA_m5C:0.000463287825341663 4821 chr11 6265537 6265537 1 + C T LIHC 6265537 + 6265517 6265557 41 ACTCGAGAGTGGCCAATGCCCGAGGACCTGGCTGAGGCTGA ACTCGAGAGTGGCCAATGCCTGAGGACCTGGCTGAGGCTGA Direct Loss 0.95191260300352 0 0.8743257 0 prediction 0.903825206007039 Functional Loss - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6265537 chr11:6265537 synonymous SNV . 0 21 hm5C_associated_SNPs_49501 0 0 0 0 0 exosome 0.500231644013025 0 0.7486514 0.000463288026050668 hm5C_site_4821 DeepMRMD:0.7486514;iRNA_m5C:0.000463288026050668 4822 chr20 30064324 30064324 1 + C T UCEC 30064324 + 30064304 30064344 41 CCCCACTGCCCCTGTCCCCACGGGGCCACCAGCCTGGCCGC CCCCACTGCCCCTGTCCCCATGGGGCCACCAGCCTGGCCGC Direct Loss 0.951898591261057 0 0.92378026 0 prediction 0.903797182522114 Functional Loss - REM1 ENSG00000088320 CDS Human protein_coding chr20:30064324 chr20:30064324 nonsynonymous SNV 0.015 2 21 hm5C_associated_SNPs_49502 0 0 0 0 0 exosome 0.500231643921135 0 0.84756052 0.000463287842270343 hm5C_site_4822 DeepMRMD:0.84756052;iRNA_m5C:0.000463287842270343 4823 chr7 86415996 86415996 1 + C A HNSC 86415996 + 86415976 86416016 41 CGCGCCAATGCCTCCTTCACCTGGGTGGCCAGCGACGGCTG CGCGCCAATGCCTCCTTCACATGGGTGGCCAGCGACGGCTG Direct Loss 0.951898300601024 0 0.8788715 0 prediction 0.903796601202048 Functional Loss - GRM3 ENSG00000198822 CDS Human protein_coding chr7:86415996 chr7:86415996 synonymous SNV . 0 21 hm5C_associated_SNPs_49503 0 0 0 0 0 Endoplasmic reticulum 0.500230842421928 0 0.757743 0.000461684843855226 hm5C_site_4823 DeepMRMD:0.757743;iRNA_m5C:0.000461684843855226 4824 chrX 140994850 140994850 1 + C A LUSC 140994850 + 140994830 140994870 41 ACTTTCCTCAGAGCCCTCCTCAGGGGGAGGACTCCCTATCT ACTTTCCTCAGAGCCCTCCTAAGGGGGAGGACTCCCTATCT Direct Loss 0.951881856426554 0 0.9472229 0 prediction 0.903763712853108 Functional Loss - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140994850 chrX:140994850 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49504 0 0 0 0 0 exosome 0.500231641742837 0 0.8944458 0.000463283485673482 hm5C_site_4824 DeepMRMD:0.8944458;iRNA_m5C:0.000463283485673482 4825 chr11 65733926 65733926 1 + C A LUAD 65733926 + 65733906 65733946 41 CGGCTGATGGCCTGCGGGAGCGGGAGCTGGAGGAGATCCGG CGGCTGATGGCCTGCGGGAGAGGGAGCTGGAGGAGATCCGG Direct Loss 0.951867215255406 0 0.9300845 0 prediction 0.903734430510812 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65733926 chr11:65733926 synonymous SNV . 0 21 hm5C_associated_SNPs_49505 0 0 1 0 0 Cytosol 0.500231643923118 0 0.860169 0.000463287846236282 hm5C_site_4825 DeepMRMD:0.860169;iRNA_m5C:0.000463287846236282 4826 chr5 131607069 131607069 1 + C T UCEC 131607069 + 131607049 131607089 41 GCTCCGAGGTGTACAGGATGCTGCGGGAGCCAGCCGAGCCC GCTCCGAGGTGTACAGGATGTTGCGGGAGCCAGCCGAGCCC Direct Loss 0.951847911212691 0 0.4672003 0 prediction 0.903695822425382 Functional Loss - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607069 chr5:131607069 synonymous SNV . 0 21 hm5C_associated_SNPs_49506 0 0 1 0 2 chromatin 0.500231643921787 0 0 0.000463287843573523 hm5C_site_4826 DeepMRMD:0;iRNA_m5C:0.000463287843573523 4827 chr22 29627634 29627634 1 + C T UCEC 29627634 + 29627614 29627654 41 ACCGGCCCCAAGGGAGATGCCGGCAGTCGGGGCCCAATGGG ACCGGCCCCAAGGGAGATGCTGGCAGTCGGGGCCCAATGGG Direct Loss 0.951844328022634 0 0.9119241 0 prediction 0.903688656045267 Functional Loss - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29627634 chr22:29627634 synonymous SNV . 0 21 hm5C_associated_SNPs_49507 0 0 1 0 2 chromatin 0.500231643921091 0 0.8238482 0.000463287842182858 hm5C_site_4827 DeepMRMD:0.8238482;iRNA_m5C:0.000463287842182858 4828 chr12 118464799 118464799 1 + C G BLCA 118464799 + 118464779 118464819 41 TCCTGGACTGGATGTTGAATCAAGATTTCACCACAGCCTAC TCCTGGACTGGATGTTGAATGAAGATTTCACCACAGCCTAC Direct Loss 0.951836661071418 0 0.5828427 0 prediction 0.903673322142836 Functional Loss - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118464799 chr12:118464799 nonsynonymous SNV 0.991 0 21 hm5C_associated_SNPs_49508 0 0 1 0 1 Ribosome 0.500231542219883 0 0.1656854 0.000463084439766392 hm5C_site_4828 DeepMRMD:0.1656854;iRNA_m5C:0.000463084439766392 4829 chr10 48370731 48370731 1 + C T UCEC 48370731 + 48370711 48370751 41 CTGCTGTGGGCAGGGCGGGCCGGGATGTGGGCAGTGCGGAG CTGCTGTGGGCAGGGCGGGCTGGGATGTGGGCAGTGCGGAG Direct Loss 0.951829438708746 0 0.8985978 0 prediction 0.903658877417491 Functional Loss - ZNF488 ENSG00000165388 CDS Human other chr10:48370731 chr10:48370731 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49509 0 0 0 0 0 exosome 0.50023140504856 0 0.7971956 0.000462810097120681 hm5C_site_4829 DeepMRMD:0.7971956;iRNA_m5C:0.000462810097120681 4830 chr19 44768478 44768478 1 + C A HNSC 44768478 + 44768458 44768498 41 TTTTCCCAGTTCTGCCTTCCCAGGACCCTGCCCTTCCCCAG TTTTCCCAGTTCTGCCTTCCAAGGACCCTGCCCTTCCCCAG Direct Loss 0.951829324301319 0 0.70116216 0 prediction 0.903658648602639 Functional Loss - ZNF233 ENSG00000159915 CDS Human protein_coding chr19:44768478 chr19:44768478 nonsynonymous SNV 0.009 0 21 hm5C_associated_SNPs_49510 0 0 1 0 2 chromatin 0.500231643921092 0 0.40232432 0.000463287842184856 hm5C_site_4830 DeepMRMD:0.40232432;iRNA_m5C:0.000463287842184856 4831 chrX 151092242 151092242 1 + C T UCEC 151092242 + 151092222 151092262 41 AGGCTCCTACTACTGAGGAGCAGGAGGCTGCTGTCTCCTCC AGGCTCCTACTACTGAGGAGTAGGAGGCTGCTGTCTCCTCC Direct Loss 0.951825632443506 0 0.8966387 0 prediction 0.903651264887012 Functional Loss - MAGEA4 ENSG00000147381 CDS Human protein_coding chrX:151092242 chrX:151092242 stopgain 0.000 0 21 hm5C_associated_SNPs_49511 0 0 0 0 0 unknown 0.500231643921091 0 0.7932774 0.000463287842182414 hm5C_site_4831 DeepMRMD:0.7932774;iRNA_m5C:0.000463287842182414 4832 chr15 84237393 84237393 1 + C T COAD 84237393 + 84237373 84237413 41 GGGGACTGTATGCTGAAATACGGGAAGGAGCTCGGGGAAGA GGGGACTGTATGCTGAAATATGGGAAGGAGCTCGGGGAAGA Direct Loss 0.951818862756509 0 0.47587302 0 prediction 0.903637725513018 Functional Loss - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84237393 chr15:84237393 synonymous SNV . 0 21 hm5C_associated_SNPs_49512 0 0 1 0 1 Ribosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4832 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4833 chr15 41063244 41063244 1 + C G rs1866170 41063244 + 41063224 41063264 41 GGGGTGAGGGTGGGCAAAGCCGGGGTGACTGGAAGATCCAG GGGGTGAGGGTGGGCAAAGCGGGGGTGACTGGAAGATCCAG Direct Loss 0.951808241957298 0 0.9084232 0 prediction 0.903616483914595 Functional Loss - C15orf62 ENSG00000188277 UTR3 Human protein_coding chr15:41063244 chr15:41063244 . . 0 21 hm5C_associated_SNPs_49513 0 0 0 2 0 exosome 0.500231660071412 0 0.8168464 0.000463320142824131 hm5C_site_4833 DeepMRMD:0.8168464;iRNA_m5C:0.000463320142824131 4834 chr13 77566090 77566090 1 + C A rs77416795 77566090 + 77566070 77566110 41 GGGCGCGGGGAGGTGTCATGCGCCGGAACCTGCGCTTGGGG GGGCGCGGGGAGGTGTCATGAGCCGGAACCTGCGCTTGGGG Direct Loss 0.951806473163312 0 0.816541 0 prediction 0.903612946326624 Functional Loss - CLN5 ENSG00000102805 CDS Human protein_coding chr13:77566090 chr13:77566090 nonsynonymous SNV 0.130 1 21 hm5C_associated_SNPs_49514 0 0 0 0 0 Endoplasmic reticulum 0.500231643926327 0 0.633082 0.000463287852654037 hm5C_site_4834 DeepMRMD:0.633082;iRNA_m5C:0.000463287852654037 4835 chr5 140475031 140475031 1 + C T BLCA 140475031 + 140475011 140475051 41 ACCCTCACAGCGCTAGATGGCGGGAGTCCACCCAGGTCCGG ACCCTCACAGCGCTAGATGGTGGGAGTCCACCCAGGTCCGG Direct Loss 0.951805610878511 0 0.91667455 0 prediction 0.903611221757022 Functional Loss - PCDHB2 ENSG00000112852 CDS Human protein_coding chr5:140475031 chr5:140475031 synonymous SNV . 0 21 hm5C_associated_SNPs_49515 0 0 1 0 0 exosome 0.500231644421937 0 0.8333491 0.000463288843874921 hm5C_site_4835 DeepMRMD:0.8333491;iRNA_m5C:0.000463288843874921 4836 chr10 94452231 94452231 1 + C T STAD 94452231 + 94452211 94452251 41 ATCGAGCTGGAGAAGAAATTCGAGACGCAGAAATATCTCTC ATCGAGCTGGAGAAGAAATTTGAGACGCAGAAATATCTCTC Direct Loss 0.951798819348346 0 0.2635951 0 prediction 0.903597638696693 Functional Loss - HHEX ENSG00000152804 CDS Human protein_coding chr10:94452231 chr10:94452231 synonymous SNV . 0 21 hm5C_associated_SNPs_49516 0 0 1 0 1 cytosol 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4836 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4837 chr19 58115732 58115732 1 + C T LUSC 58115732 + 58115712 58115752 41 AGATGCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAAC AGATGCAGAGGCTCCTGTACTGCGATGTGATGCTGGAGAAC Direct Loss 0.951782786608319 0 0.62997526 0 prediction 0.903565573216638 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58115732 chr19:58115732 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49517 0 0 0 1 2 Nucleus 0.50025798672808 0 0.25995052 0.000515973456159946 hm5C_site_4837 DeepMRMD:0.25995052;iRNA_m5C:0.000515973456159946 4838 chr4 47034468 47034468 1 + C T UCEC 47034468 + 47034448 47034488 41 GTTGGGATGCGGATCGATGTCGCCAGCATAGACATGGTCTC GTTGGGATGCGGATCGATGTTGCCAGCATAGACATGGTCTC Direct Loss 0.951781444567402 0 0.16553083 0 prediction 0.903562889134804 Functional Loss - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47034468 chr4:47034468 synonymous SNV . 0 21 hm5C_associated_SNPs_49518 0 0 0 1 2 Cytosol 0.500235886753422 0 0 0.000471773506844908 hm5C_site_4838 DeepMRMD:0;iRNA_m5C:0.000471773506844908 4839 chr17 8215940 8215940 1 + C T SKCM 8215940 + 8215920 8215960 41 CCCTCACCGGGAGTGGGTCCCAGGAGAACGGTGCTCCAGGT CCCTCACCGGGAGTGGGTCCTAGGAGAACGGTGCTCCAGGT Direct Loss 0.951781234735257 0 0.9281728 0 prediction 0.903562469470514 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8215940 chr17:8215940 stopgain 0.996 0 21 hm5C_associated_SNPs_49519 0 0 0 0 1 exosome 0.500232980351144 0 0.8563456 0.000465960702287216 hm5C_site_4839 DeepMRMD:0.8563456;iRNA_m5C:0.000465960702287216 4840 chr10 101090071 101090071 1 + C T UCEC 101090071 + 101090051 101090091 41 ACCTCGCTGCCGCCGGGCTTCGGGGGCACCGGGGAAGACTA ACCTCGCTGCCGCCGGGCTTTGGGGGCACCGGGGAAGACTA Direct Loss 0.951775161283781 0 0.94278586 0 prediction 0.903550322567563 Functional Loss - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101090071 chr10:101090071 synonymous SNV . 0 21 hm5C_associated_SNPs_49520 0 0 0 0 0 cytosol 0.500231643921733 0 0.88557172 0.00046328784346561 hm5C_site_4840 DeepMRMD:0.88557172;iRNA_m5C:0.00046328784346561 4841 chr10 12131171 12131171 1 + C T LIHC 12131171 + 12131151 12131191 41 CCGTGGCCGTGGGCAAAACTCGCGGCAGGCAGCAGTCTCGC CCGTGGCCGTGGGCAAAACTTGCGGCAGGCAGCAGTCTCGC Direct Loss 0.951771811296643 0 0.92130756 0 prediction 0.903543622593286 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12131171 chr10:12131171 nonsynonymous SNV 0.945 4 21 hm5C_associated_SNPs_49521 0 0 1 0 1 Endoplasmic reticulum 0.500231643921422 0 0.84261512 0.000463287842843663 hm5C_site_4841 DeepMRMD:0.84261512;iRNA_m5C:0.000463287842843663 4842 chr18 44497724 44497724 1 + C G rs4890707 44497724 + 44497704 44497744 41 GTTATCCGCGGGCCTGGCCTCGGGAAGTGGCGGGGAGGAAG GTTATCCGCGGGCCTGGCCTGGGGAAGTGGCGGGGAGGAAG Direct Loss 0.951771482428095 0 0.9219111 0 prediction 0.903542964856189 Functional Loss - PIAS2 ENSG00000167216 UTR5 Human protein_coding chr18:44497724 chr18:44497724 . . 0 21 hm5C_associated_SNPs_49522 0 0 0 0 0 Cytosol 0.500231643921092 0 0.8438222 0.000463287842184856 hm5C_site_4842 DeepMRMD:0.8438222;iRNA_m5C:0.000463287842184856 4843 chr2 223918016 223918016 1 + C T BLCA 223918016 + 223917996 223918036 41 ACCTCGGAGACGCCCCTCAACGAGAGCAGCGAAGGGTCCTC ACCTCGGAGACGCCCCTCAATGAGAGCAGCGAAGGGTCCTC Direct Loss 0.951758203995217 0 0.7736478 0 prediction 0.903516407990435 Functional Loss - KCNE4 ENSG00000152049 CDS Human protein_coding chr2:223918016 chr2:223918016 synonymous SNV . 0 21 hm5C_associated_SNPs_49523 0 0 0 0 0 Nucleus 0.500231643890546 0 0.5472956 0.00046328778109106 hm5C_site_4843 DeepMRMD:0.5472956;iRNA_m5C:0.00046328778109106 4844 chr1 1417625 1417625 1 + C T STAD 1417625 + 1417605 1417645 41 GGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAG GGGAGAATGCAGACATCATCTGCGAGCAGATCCGCCTGAAG Direct Loss 0.951743800719173 0 0.37296292 0 prediction 0.903487601438345 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1417625 chr1:1417625 nonsynonymous SNV 0.673 4 21 hm5C_associated_SNPs_49524 0 0 1 0 1 Ribosome 0.500231644161468 0 0 0.000463288322936517 hm5C_site_4844 DeepMRMD:0;iRNA_m5C:0.000463288322936517 4845 chrX 154444803 154444803 1 + C T UCEC 154444803 + 154444783 154444823 41 TGGCAAAGGAGAAATGGCCACAGGGAATGGGCGGCGGCTCC TGGCAAAGGAGAAATGGCCATAGGGAATGGGCGGCGGCTCC Direct Loss 0.951736689316311 0 0.8698938 0 prediction 0.903473378632622 Functional Loss - VBP1 ENSG00000155959 CDS Human protein_coding chrX:154444803 chrX:154444803 nonsynonymous SNV 0.053 0 21 hm5C_associated_SNPs_49525 0 0 1 0 1 Ribosome 0.500231643921092 0 0.7397876 0.000463287842184856 hm5C_site_4845 DeepMRMD:0.7397876;iRNA_m5C:0.000463287842184856 4846 chr1 31191784 31191784 1 + G T LUAD 31191784 - 31191764 31191804 41 GTGGTCATCGTGGTGACAGACGGGAGGCCCCAGGACAGCGT GTGGTCATCGTGGTGACAGAAGGGAGGCCCCAGGACAGCGT Direct Loss 0.951728527755547 0 0.83073604 0 prediction 0.903457055511093 Functional Loss - MATN1 ENSG00000162510 CDS Human protein_coding chr1:31191784 chr1:31191784 nonsynonymous SNV 0.965 4 21 hm5C_associated_SNPs_49526 0 0 0 0 1 chromatin 0.500230999222253 0 0.66147208 0.000461998444505118 hm5C_site_4846 DeepMRMD:0.66147208;iRNA_m5C:0.000461998444505118 4847 chrX 129306052 129306052 1 + C G rs11542874 129306052 + 129306032 129306072 41 GGGAGATGGCGCAGCCCATCCTGGGCCATGGGAGCCTGCAG GGGAGATGGCGCAGCCCATCGTGGGCCATGGGAGCCTGCAG Direct Loss 0.951719768328736 0 0.7479529 0 prediction 0.903439536657473 Functional Loss - RAB33A ENSG00000134594 CDS Human protein_coding chrX:129306052 chrX:129306052 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_49527 0 0 0 0 0 exosome 0.500230041802995 0 0.4959058 0.000460083605990702 hm5C_site_4847 DeepMRMD:0.4959058;iRNA_m5C:0.000460083605990702 4848 chrX 11783862 11783862 1 + C T CESC 11783862 + 11783842 11783882 41 GAAAAGAGTAGGTTCATTCTCGGGTGCCCCAGGCCGGGGAG GAAAAGAGTAGGTTCATTCTTGGGTGCCCCAGGCCGGGGAG Direct Loss 0.951706411334102 0 0.94497395 0 prediction 0.903412822668205 Functional Loss - MSL3 ENSG00000005302 CDS Human protein_coding chrX:11783862 chrX:11783862 synonymous SNV . 0 21 hm5C_associated_SNPs_49528 0 0 1 0 1 Cytosol 0.500231643921092 0 0.8899479 0.000463287842184856 hm5C_site_4848 DeepMRMD:0.8899479;iRNA_m5C:0.000463287842184856 4849 chr20 31625415 31625415 1 + C T rs77537428 31625415 + 31625395 31625435 41 ACCATCAAGCTTGCTGATGCCGGGGAGGCCCTCACGTTCCC ACCATCAAGCTTGCTGATGCTGGGGAGGCCCTCACGTTCCC Direct Loss 0.95170616436416 0 0.91942626 0 prediction 0.903412328728319 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31625415 chr20:31625415 synonymous SNV . 0 21 hm5C_associated_SNPs_49529 0 0 0 0 1 unknown 0.500231643206678 0 0.83885252 0.000463286413356689 hm5C_site_4849 DeepMRMD:0.83885252;iRNA_m5C:0.000463286413356689 4850 chr13 113826454 113826454 1 + C T rs3024775 113826454 + 113826434 113826474 41 GCCAGAATGAACAACACAACCGGAAGCGGGATTCCAAGCTG GCCAGAATGAACAACACAACTGGAAGCGGGATTCCAAGCTG Direct Loss 0.951705163292507 0 0.5604983 0 prediction 0.903410326585014 Functional Loss - PROZ ENSG00000126231 UTR3 Human protein_coding chr13:113826454 chr13:113826454 . . 0 21 hm5C_associated_SNPs_49530 0 0 0 0 0 exosome 0.500231643665011 0 0.1209966 0.000463287330022766 hm5C_site_4850 DeepMRMD:0.1209966;iRNA_m5C:0.000463287330022766 4851 chr8 99956684 99956684 1 + C G rs181731116 99956684 + 99956664 99956704 41 TGGGGCAGCCTGGGGAGGGACGCGGGCGGGGACGGAGCTCG TGGGGCAGCCTGGGGAGGGAGGCGGGCGGGGACGGAGCTCG Direct Loss 0.951694991614978 0 0.8980335 0 prediction 0.903389983229955 Functional Loss - OSR2 ENSG00000164920 UTR5 Human protein_coding chr8:99956684 chr8:99956684 . . 0 21 hm5C_associated_SNPs_49531 0 0 1 0 0 exosome 0.500231643921093 0 0.796067 0.0004632878421853 hm5C_site_4851 DeepMRMD:0.796067;iRNA_m5C:0.0004632878421853 4852 chr7 106797680 106797680 1 + C T SKCM 106797680 + 106797660 106797700 41 AGTAGAAATCGCTCGATGCTCGCGGGGACAGTACTTTGGAG AGTAGAAATCGCTCGATGCTTGCGGGGACAGTACTTTGGAG Direct Loss 0.951694699630625 0 0.9339063 0 prediction 0.90338939926125 Functional Loss - PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797680 chr7:106797680 nonsynonymous SNV 0.516 1 21 hm5C_associated_SNPs_49532 0 0 1 0 1 Ribosome 0.500231643214833 0 0.8678126 0.000463286429665644 hm5C_site_4852 DeepMRMD:0.8678126;iRNA_m5C:0.000463286429665644 4853 chr1 160313209 160313209 1 + C T LUSC 160313209 + 160313189 160313229 41 GGCTACGGCAGGGGGTGGCTCTGGGGCTGACCCGGGAAGTC GGCTACGGCAGGGGGTGGCTTTGGGGCTGACCCGGGAAGTC Direct Loss 0.951691320435559 0 0.89533967 0 prediction 0.903382640871118 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160313209 chr1:160313209 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_49533 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0 0.79067934 0.000463287842184856 hm5C_site_4853 DeepMRMD:0.79067934;iRNA_m5C:0.000463287842184856 4854 chr14 102028530 102028530 1 + C T COAD 102028530 + 102028510 102028550 41 TCAGCGCAGCGAGGGTACTGCAGCAAGGTGCACCCGGCTGC TCAGCGCAGCGAGGGTACTGTAGCAAGGTGCACCCGGCTGC Direct Loss 0.951681816430575 0 0.31657818 0 prediction 0.903363632861151 Functional Loss - DIO3 ENSG00000197406 CDS Human protein_coding chr14:102028530 chr14:102028530 unknown 0.142 0 21 hm5C_associated_SNPs_49534 0 0 0 0 0 Endoplasmic reticulum 0.500253428113649 0 0 0.000506856227298735 hm5C_site_4854 DeepMRMD:0;iRNA_m5C:0.000506856227298735 4855 chr7 28848921 28848921 1 + C A READ 28848921 + 28848901 28848941 41 ACGAGAGGCGGCGGAAATTTCTGGAACGGAACCGGGCAGCT ACGAGAGGCGGCGGAAATTTATGGAACGGAACCGGGCAGCT Direct Loss 0.951667386447733 0 0.7281864 0 prediction 0.903334772895466 Functional Loss - CREB5 ENSG00000146592 CDS Human protein_coding chr7:28848921 chr7:28848921 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49535 0 0 0 0 0 Cytosol 0.500231643921092 0 0.4563728 0.000463287842184856 hm5C_site_4855 DeepMRMD:0.4563728;iRNA_m5C:0.000463287842184856 4856 chr9 136516770 136516770 1 + C A rs143743431 136516770 + 136516750 136516790 41 CCACAGGCACTGCCTCCCTCCGGGATCCACATCTTCGCCTC CCACAGGCACTGCCTCCCTCAGGGATCCACATCTTCGCCTC Direct Loss 0.951664787026484 0 0.8162476 0 prediction 0.903329574052969 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136516770 chr9:136516770 synonymous SNV . 0 21 hm5C_associated_SNPs_49536 0 0 0 0 1 cytosol 0.500190023055181 0 0.6324952 0.000380046110362464 hm5C_site_4856 DeepMRMD:0.6324952;iRNA_m5C:0.000380046110362464 4857 chr4 39448254 39448254 1 + C T COAD 39448254 + 39448234 39448274 41 GGGCTGAAGCTTGGCATCTCCGCGATGGTCACCCTGTATTA GGGCTGAAGCTTGGCATCTCTGCGATGGTCACCCTGTATTA Direct Loss 0.951657016593081 0 0.4991654 0 prediction 0.903314033186162 Functional Loss - KLB ENSG00000134962 CDS Human protein_coding chr4:39448254 chr4:39448254 synonymous SNV . 0 21 hm5C_associated_SNPs_49537 0 0 1 0 0 Cytosol 0.500231643921091 0 0 0.000463287842182636 hm5C_site_4857 DeepMRMD:0;iRNA_m5C:0.000463287842182636 4858 chr6 137143735 137143735 1 + C G rs528948146 137143735 + 137143715 137143755 41 CTGCCTGGTCTCTCTAACCGCGCCAGTGTGCCTCCGACTCG CTGCCTGGTCTCTCTAACCGGGCCAGTGTGCCTCCGACTCG Direct Loss 0.951655448868236 0 0.8983344 0 prediction 0.903310897736473 Functional Loss - PEX7 ENSG00000112357 UTR5 Human protein_coding chr6:137143735 chr6:137143735 . . 0 21 hm5C_associated_SNPs_49538 0 0 1 0 0 Ribosome 0.500231664741601 0 0.7966688 0.000463329483202157 hm5C_site_4858 DeepMRMD:0.7966688;iRNA_m5C:0.000463329483202157 4859 chr3 143691673 143691673 1 + C T rs6798911 143691673 + 143691653 143691693 41 CGGTGGAGGGCTGGTCGGACCTGGTGCACTGCCCCTCGCAG CGGTGGAGGGCTGGTCGGACTTGGTGCACTGCCCCTCGCAG Direct Loss 0.951651324176435 0 0.5568649 0 prediction 0.90330264835287 Functional Loss - C3orf58 ENSG00000181744 CDS Human protein_coding chr3:143691673 chr3:143691673 synonymous SNV . 0 21 hm5C_associated_SNPs_49539 0 0 1 0 0 Ribosome 0.500231643921092 0 0.1137298 0.000463287842184856 hm5C_site_4859 DeepMRMD:0.1137298;iRNA_m5C:0.000463287842184856 4860 chr2 88825182 88825182 1 + C T STAD 88825182 + 88825162 88825202 41 CATGGCAGGTGTGAAATACCCGGGACAGGTGAGTGATGTGG CATGGCAGGTGTGAAATACCTGGGACAGGTGAGTGATGTGG Direct Loss 0.951631801835537 0 0.49025458 0 prediction 0.903263603671074 Functional Loss - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88825182 chr2:88825182 nonsynonymous SNV 0.029 3 21 hm5C_associated_SNPs_49540 0 0 0 0 2 unknown 0.50023164379897 0 0 0.00046328759794001 hm5C_site_4860 DeepMRMD:0;iRNA_m5C:0.00046328759794001 4861 chr1 182758612 182758612 1 + C T rs57842896 182758612 + 182758592 182758632 41 GGCAGGGGGAGGTTTGCACTCGGCGTGGCGCGGGTGAGCCG GGCAGGGGGAGGTTTGCACTTGGCGTGGCGCGGGTGAGCCG Direct Loss 0.951627879922042 0 0.90551513 0 prediction 0.903255759844084 Functional Loss - NPL ENSG00000135838 upstream Human protein_coding chr1:182758612 chr1:182758612 . . 0 21 hm5C_associated_SNPs_49541 0 0 0 0 0 Cytosol 0.500231643921102 0 0.81103026 0.000463287842203508 hm5C_site_4861 DeepMRMD:0.81103026;iRNA_m5C:0.000463287842203508 4862 chr11 10794137 10794137 1 + C T COAD 10794137 + 10794117 10794157 41 GCAAACAAGATGAAGAAGAGCGGGAGCTGCGGGCCAAGCAA GCAAACAAGATGAAGAAGAGTGGGAGCTGCGGGCCAAGCAA Direct Loss 0.951608778870491 0 0.92072594 0 prediction 0.903217557740981 Functional Loss - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10794137 chr11:10794137 nonsynonymous SNV 0.961 3 21 hm5C_associated_SNPs_49542 0 0 1 0 2 Cytosol 0.500231643921094 0 0.84145188 0.000463287842188631 hm5C_site_4862 DeepMRMD:0.84145188;iRNA_m5C:0.000463287842188631 4863 chr12 81111245 81111245 1 + C T LUSC 81111245 + 81111225 81111265 41 TCCGCTACATCGAGAGCCTGCAGGAGTTGCTGAGAGAGCAG TCCGCTACATCGAGAGCCTGTAGGAGTTGCTGAGAGAGCAG Direct Loss 0.951603465603382 0 0.91234624 0 prediction 0.903206931206764 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81111245 chr12:81111245 stopgain 0.998 1 21 hm5C_associated_SNPs_49543 0 0 0 0 1 unknown 0.500231643921073 0 0.82469248 0.000463287842146221 hm5C_site_4863 DeepMRMD:0.82469248;iRNA_m5C:0.000463287842146221 4864 chr18 47093864 47093864 1 + C T rs2000813 47093864 + 47093844 47093884 41 ACTCGTGTCAGCCCTGCACACAAGAGAGAAAGACGCCAATG ACTCGTGTCAGCCCTGCACATAAGAGAGAAAGACGCCAATG Direct Loss 0.951596163908035 0 0.40027243 0 prediction 0.90319232781607 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47093864 chr18:47093864 nonsynonymous SNV 0.037 1 21 hm5C_associated_SNPs_49544 0 1 0 0 1 Nucleus 0.500231640217512 0 0 0.000463280435023972 hm5C_site_4864 DeepMRMD:0;iRNA_m5C:0.000463280435023972 4865 chr3 196730634 196730634 1 + C A rs529093598 196730634 + 196730614 196730654 41 CCTCCTGGCCAAAATCCTCCCGGGACACCCCACCTGGACTG CCTCCTGGCCAAAATCCTCCAGGGACACCCCACCTGGACTG Direct Loss 0.951596009887988 0 0.84722376 0 prediction 0.903192019775975 Functional Loss - MELTF-AS1 ENSG00000228109 ncRNA_exonic Human antisense chr3:196730634 chr3:196730634 . . 0 21 hm5C_associated_SNPs_49545 0 0 0 0 0 unknown 0.500231643921092 0 0.69444752 0.000463287842184856 hm5C_site_4865 DeepMRMD:0.69444752;iRNA_m5C:0.000463287842184856 4866 chr11 48328183 48328183 1 + C A LUAD 48328183 + 48328163 48328203 41 ACACAGCCATCATGGATTGCCGGAAGTGTGGCCTGCTAGCG ACACAGCCATCATGGATTGCAGGAAGTGTGGCCTGCTAGCG Direct Loss 0.951595873369959 0 0.8741745 0 prediction 0.903191746739918 Functional Loss - OR4S1 ENSG00000176555 CDS Human protein_coding chr11:48328183 chr11:48328183 synonymous SNV . 0 21 hm5C_associated_SNPs_49546 0 0 0 0 0 unknown 0.500231655381647 0 0.748349 0.000463310763294311 hm5C_site_4866 DeepMRMD:0.748349;iRNA_m5C:0.000463310763294311 4867 chr7 133812132 133812132 1 + C G LUSC 133812132 + 133812112 133812152 41 CTAAACAAGATGGCGACCTCCGAGAGGGCTCTCCTGAGGAC CTAAACAAGATGGCGACCTCGGAGAGGGCTCTCCTGAGGAC Direct Loss 0.951590826427026 0 0.92486334 0 prediction 0.903181652854051 Functional Loss - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133812132 chr7:133812132 synonymous SNV . 0 21 hm5C_associated_SNPs_49547 0 0 0 0 0 cytosol 0.500231643926423 0 0.84972668 0.00046328785284655 hm5C_site_4867 DeepMRMD:0.84972668;iRNA_m5C:0.00046328785284655 4868 chr3 122514265 122514265 1 + C T BLCA 122514265 + 122514245 122514285 41 GGAACACCTGGGGTCCCATCCAGAACTCGGCGCGCCAGGCC GGAACACCTGGGGTCCCATCTAGAACTCGGCGCGCCAGGCC Direct Loss 0.951583971528921 0 0.549358 0 prediction 0.903167943057843 Functional Loss - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122514265 chr3:122514265 stopgain 1.000 1 21 hm5C_associated_SNPs_49548 0 0 0 0 0 Endoplasmic reticulum 0.500231645267367 0 0.098716 0.000463290534734151 hm5C_site_4868 DeepMRMD:0.098716;iRNA_m5C:0.000463290534734151 4869 chr8 145747933 145747933 1 + C T BLCA 145747933 + 145747913 145747953 41 CCCCTGTTCCGGGCCGCAGTCAGCGGGCGCCTCCGCCGGAC CCCCTGTTCCGGGCCGCAGTTAGCGGGCGCCTCCGCCGGAC Direct Loss 0.951575403539164 0 0.92702234 0 prediction 0.903150807078329 Functional Loss - LRRC24 ENSG00000254402 CDS Human protein_coding chr8:145747933 chr8:145747933 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49549 0 0 0 0 0 chromatin 0.500231643908482 0 0.85404468 0.000463287816964142 hm5C_site_4869 DeepMRMD:0.85404468;iRNA_m5C:0.000463287816964142 4870 chr21 37518699 37518699 1 + C A KIRC 37518699 + 37518679 37518719 41 ATGGATGGGAAAGACAGCATCAGGACTGTGGAGGAGGGGGC ATGGATGGGAAAGACAGCATAAGGACTGTGGAGGAGGGGGC Direct Loss 0.951564950297685 0 0.85358375 0 prediction 0.90312990059537 Functional Loss - CBR3 ENSG00000159231 CDS Human protein_coding chr21:37518699 chr21:37518699 synonymous SNV . 0 21 hm5C_associated_SNPs_49550 0 0 1 0 0 exosome 0.500231643944927 0 0.7071675 0.00046328788985317 hm5C_site_4870 DeepMRMD:0.7071675;iRNA_m5C:0.00046328788985317 4871 chr19 13906510 13906510 1 + C G rs570678207 13906510 + 13906490 13906530 41 CGGGGCTGCCCCGCGGGACCCGAGGAGCGCGATGCCGGGGC CGGGGCTGCCCCGCGGGACCGGAGGAGCGCGATGCCGGGGC Direct Loss 0.951555798166699 0 0.91371226 0 prediction 0.903111596333398 Functional Loss - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13906510 chr19:13906510 synonymous SNV . 0 21 hm5C_associated_SNPs_49551 0 0 0 0 0 chromatin 0.500231643936495 0 0.82742452 0.000463287872989326 hm5C_site_4871 DeepMRMD:0.82742452;iRNA_m5C:0.000463287872989326 4872 chr8 122652280 122652280 1 + C G rs534134027 122652280 + 122652260 122652300 41 GCAGCTGCCGAAGCGCAGCGCGCGGTCCCCACGCACGCCCT GCAGCTGCCGAAGCGCAGCGGGCGGTCCCCACGCACGCCCT Direct Loss 0.951555176938807 0 0.9096439 0 prediction 0.903110353877613 Functional Loss - HAS2-AS1 ENSG00000248690 ncRNA_exonic Human antisense chr8:122652280 chr8:122652280 . . 0 21 hm5C_associated_SNPs_49552 0 0 0 0 0 unknown 0.500231643921714 0 0.8192878 0.00046328784342875 hm5C_site_4872 DeepMRMD:0.8192878;iRNA_m5C:0.00046328784342875 4873 chr17 41570293 41570293 1 + C T COAD 41570293 + 41570273 41570313 41 AGCGGAATCTGGATAGATGGCGGGATAAGCATGTGGACCGC AGCGGAATCTGGATAGATGGTGGGATAAGCATGTGGACCGC Direct Loss 0.951553656469453 0 0.88701785 0 prediction 0.903107312938907 Functional Loss - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570293 chr17:41570293 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49553 0 0 1 0 0 Cytosol 0.500231643921093 0 0.7740357 0.000463287842185967 hm5C_site_4873 DeepMRMD:0.7740357;iRNA_m5C:0.000463287842185967 4874 chr14 50360887 50360887 1 + C T CESC 50360887 + 50360867 50360907 41 AACTGGGCCTGACCCGGATTCGGGACAGGAACTGGTATGTG AACTGGGCCTGACCCGGATTTGGGACAGGAACTGGTATGTG Direct Loss 0.951549803375771 0 0.9334934 0 prediction 0.903099606751541 Functional Loss - ARF6 ENSG00000165527 CDS Human protein_coding chr14:50360887 chr14:50360887 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49554 0 0 1 0 0 Cytosol 0.500231643921092 0 0.8669868 0.000463287842184856 hm5C_site_4874 DeepMRMD:0.8669868;iRNA_m5C:0.000463287842184856 4875 chr11 3423884 3423884 1 + C T SARC 3423884 + 3423864 3423904 41 AGCGGTCGGCCTTCATGGAGCGGGATGCTGGGAGCGGGCTG AGCGGTCGGCCTTCATGGAGTGGGATGCTGGGAGCGGGCTG Direct Loss 0.951548427231155 0 0.901356 0 prediction 0.90309685446231 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423884 chr11:3423884 . . 0 21 hm5C_associated_SNPs_49555 0 0 0 0 2 unknown 0.500231643918744 0 0.802712 0.000463287837487503 hm5C_site_4875 DeepMRMD:0.802712;iRNA_m5C:0.000463287837487503 4876 chr11 64329843 64329843 1 + C T ESCA 64329843 + 64329823 64329863 41 GCGGCCTGGCCTTTGCCCTGCGGGACTGGAGGACTCTCCAG GCGGCCTGGCCTTTGCCCTGTGGGACTGGAGGACTCTCCAG Direct Loss 0.951536506235383 0 0.89845407 0 prediction 0.903073012470766 Functional Loss - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64329843 chr11:64329843 nonsynonymous SNV 0.450 3 21 hm5C_associated_SNPs_49556 0 0 0 0 1 nucleoplasm 0.500231643921092 0 0.79690814 0.000463287842184856 hm5C_site_4876 DeepMRMD:0.79690814;iRNA_m5C:0.000463287842184856 4877 chr17 46972581 46972581 1 + C T GBM 46972581 + 46972561 46972601 41 TCCAGACCAGTGTTGTCTCCCGGGACATTGACACAGCAGCC TCCAGACCAGTGTTGTCTCCTGGGACATTGACACAGCAGCC Direct Loss 0.951510808938926 0 0.8530924 0 prediction 0.903021617877851 Functional Loss - ATP5G1 ENSG00000159199 CDS Human protein_coding chr17:46972581 chr17:46972581 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_49557 0 0 1 0 1 Ribosome 0.500231643944413 0 0.7061848 0.000463287888825326 hm5C_site_4877 DeepMRMD:0.7061848;iRNA_m5C:0.000463287888825326 4878 chr21 46363700 46363700 1 + C T BLCA 46363700 + 46363680 46363720 41 GTGAGGAGTGTCACTTCCGTCAGGAGAGGTGAGGCAGGCTC GTGAGGAGTGTCACTTCCGTTAGGAGAGGTGAGGCAGGCTC Direct Loss 0.951507038345524 0 0.9074169 0 prediction 0.903014076691047 Functional Loss - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46363700 chr21:46363700 synonymous SNV . 0 21 hm5C_associated_SNPs_49558 0 0 1 0 2 Ribosome 0.500231621254219 0 0.8148338 0.0004632425084381 hm5C_site_4878 DeepMRMD:0.8148338;iRNA_m5C:0.0004632425084381 4879 chr8 54852163 54852163 1 + C T COAD 54852163 + 54852143 54852183 41 GATCAGAGCGGATGGAGATGCGGAAGCGGCAGATGCCCGCC GATCAGAGCGGATGGAGATGTGGAAGCGGCAGATGCCCGCC Direct Loss 0.951499310710255 0 0.88998914 0 prediction 0.90299862142051 Functional Loss - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54852163 chr8:54852163 nonsynonymous SNV 0.761 3 21 hm5C_associated_SNPs_49559 0 0 0 0 1 chromatin 0.500231642267613 0 0.77997828 0.000463284535226371 hm5C_site_4879 DeepMRMD:0.77997828;iRNA_m5C:0.000463284535226371 4880 chr2 208576731 208576731 1 + C T rs61747448 208576731 + 208576711 208576751 41 GACATCTACGAGGCGGTGTCCGGGGACGCGGTGGCGGTAGC GACATCTACGAGGCGGTGTCTGGGGACGCGGTGGCGGTAGC Direct Loss 0.951498791208365 0 0.92299867 0 prediction 0.90299758241673 Functional Loss - CCNYL1 ENSG00000163249 CDS Human protein_coding chr2:208576731 chr2:208576731 synonymous SNV . 0 21 hm5C_associated_SNPs_49560 0 0 0 0 1 Cytosol 0.500231643921092 0 0.84599734 0.000463287842184856 hm5C_site_4880 DeepMRMD:0.84599734;iRNA_m5C:0.000463287842184856 4881 chr17 4803625 4803625 1 + C T rs79009580 4803625 + 4803605 4803645 41 ATCCGGGTGCAGCGCTGAGCCGGGTAGCCCAAGCCGCAGGG ATCCGGGTGCAGCGCTGAGCTGGGTAGCCCAAGCCGCAGGG Direct Loss 0.951494583966538 0 0.8745786 0 prediction 0.902989167933075 Functional Loss - C17orf107 ENSG00000205710 CDS Human protein_coding chr17:4803625 chr17:4803625 nonsynonymous SNV 0.004 3 21 hm5C_associated_SNPs_49561 0 0 0 0 1 exosome 0.500231643921034 0 0.7491572 0.000463287842067395 hm5C_site_4881 DeepMRMD:0.7491572;iRNA_m5C:0.000463287842067395 4882 chr19 45540995 45540995 1 + C T COAD 45540995 + 45540975 45541015 41 ACATGTTCCCCAATCATTACCGCGAGGCGGCCTTTGGGGGC ACATGTTCCCCAATCATTACTGCGAGGCGGCCTTTGGGGGC Direct Loss 0.951487309586426 0 0.87746406 0 prediction 0.902974619172852 Functional Loss - RELB ENSG00000104856 CDS Human protein_coding chr19:45540995 chr19:45540995 nonsynonymous SNV 0.966 2 21 hm5C_associated_SNPs_49562 0 0 0 0 0 Cytosol 0.500231643981254 0 0.75492812 0.000463287962507497 hm5C_site_4882 DeepMRMD:0.75492812;iRNA_m5C:0.000463287962507497 4883 chr14 23315028 23315028 1 + C T LUAD 23315028 + 23315008 23315048 41 GGACTGGATGGGCTGCCCATCGGGAGGCCGGCCGGATGAGG GGACTGGATGGGCTGCCCATTGGGAGGCCGGCCGGATGAGG Direct Loss 0.951484089622926 0 0.9176537 0 prediction 0.902968179245852 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23315028 chr14:23315028 nonsynonymous SNV 0.388 0 21 hm5C_associated_SNPs_49563 0 0 1 0 0 cytosol 0.500231652276565 0 0.8353074 0.000463304553129262 hm5C_site_4883 DeepMRMD:0.8353074;iRNA_m5C:0.000463304553129262 4884 chr19 52272055 52272055 1 + C G LUAD 52272055 + 52272035 52272075 41 CTGGGCAATGGGCTTGTGATCTGGGTGGCTGGATTCCGGAT CTGGGCAATGGGCTTGTGATGTGGGTGGCTGGATTCCGGAT Direct Loss 0.951461564705645 0 0.9070296 0 prediction 0.902923129411289 Functional Loss - FPR2 ENSG00000171049 CDS Human protein_coding chr19:52272055 chr19:52272055 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_49564 0 0 0 0 0 exosome 0.500231643933818 0 0.8140592 0.000463287867636275 hm5C_site_4884 DeepMRMD:0.8140592;iRNA_m5C:0.000463287867636275 4885 chr9 80923441 80923441 1 + C T UCEC 80923441 + 80923421 80923461 41 TCCGAGAGTGCCCCTCGGTCCTGGAATACAAGGTGCAGGCT TCCGAGAGTGCCCCTCGGTCTTGGAATACAAGGTGCAGGCT Direct Loss 0.951456191658403 0 0.21483475 0 prediction 0.902912383316805 Functional Loss - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80923441 chr9:80923441 synonymous SNV . 0 21 hm5C_associated_SNPs_49565 0 0 1 0 1 Ribosome 0.500231643920408 0 0 0.000463287840816173 hm5C_site_4885 DeepMRMD:0;iRNA_m5C:0.000463287840816173 4886 chr12 110019245 110019245 1 + C T UCEC 110019245 + 110019225 110019265 41 GTGTGGTCGGAGCTGCCCCCCGGGGCGGGCTTGGGCTCCAG GTGTGGTCGGAGCTGCCCCCTGGGGCGGGCTTGGGCTCCAG Direct Loss 0.951447780166307 0 0.9096056 0 prediction 0.902895560332615 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110019245 chr12:110019245 synonymous SNV . 0 21 hm5C_associated_SNPs_49566 0 0 1 0 1 Ribosome 0.500231643921092 0 0.8192112 0.000463287842184634 hm5C_site_4886 DeepMRMD:0.8192112;iRNA_m5C:0.000463287842184634 4887 chr1 47505158 47505158 1 + C T PRAD 47505158 + 47505138 47505178 41 CTGAGCATCAAGAGAGATGCCGGGAGGAGGTCAGGGGCATC CTGAGCATCAAGAGAGATGCTGGGAGGAGGTCAGGGGCATC Direct Loss 0.951439448495289 0 0.8477952 0 prediction 0.902878896990577 Functional Loss - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47505158 chr1:47505158 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_49567 0 0 0 0 1 Ribosome 0.500231643921091 0 0.6955904 0.000463287842181748 hm5C_site_4887 DeepMRMD:0.6955904;iRNA_m5C:0.000463287842181748 4888 chr22 21088058 21088058 1 + C T COAD 21088058 + 21088038 21088078 41 GGCAGTGGAGTAGATCTTCTCGCGAAGCACATTGCGGATGG GGCAGTGGAGTAGATCTTCTTGCGAAGCACATTGCGGATGG Direct Loss 0.951429705455209 0 0.8973067 0 prediction 0.902859410910417 Functional Loss - PI4KA ENSG00000241973 CDS Human protein_coding chr22:21088058 chr22:21088058 nonsynonymous SNV 0.962 2 21 hm5C_associated_SNPs_49568 0 0 0 0 0 Cytosol 0.500231643921088 0 0.7946134 0.000463287842175086 hm5C_site_4888 DeepMRMD:0.7946134;iRNA_m5C:0.000463287842175086 4889 chr20 61593988 61593988 1 + C T LUSC 61593988 + 61593968 61594008 41 CTTTGCAGGACGCTGCTGACCGGGGCGGTGGGCTCCCTGCT CTTTGCAGGACGCTGCTGACTGGGGCGGTGGGCTCCCTGCT Direct Loss 0.9514263686192 0 0.93150795 0 prediction 0.9028527372384 Functional Loss - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61593988 chr20:61593988 synonymous SNV . 0 21 hm5C_associated_SNPs_49569 0 0 1 0 1 Ribosome 0.500231643921092 0 0.8630159 0.000463287842183746 hm5C_site_4889 DeepMRMD:0.8630159;iRNA_m5C:0.000463287842183746 4890 chr10 135053761 135053761 1 + C T COAD 135053761 + 135053741 135053781 41 GCTGGGACCAGCCCTGTCCACGGGGCCCCGGGGCCTGTGTG GCTGGGACCAGCCCTGTCCATGGGGCCCCGGGGCCTGTGTG Direct Loss 0.951421595384312 0 0.91553795 0 prediction 0.902843190768623 Functional Loss - VENTX ENSG00000151650 CDS Human protein_coding chr10:135053761 chr10:135053761 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49570 0 0 0 0 0 Nucleus 0.500231643921092 0 0.8310759 0.000463287842184856 hm5C_site_4890 DeepMRMD:0.8310759;iRNA_m5C:0.000463287842184856 4891 chr16 31422130 31422130 1 + C T SKCM 31422130 + 31422110 31422150 41 GCCCCCCGCTACCAGCATACCGGGAAGGCTGTCATCTTCAC GCCCCCCGCTACCAGCATACTGGGAAGGCTGTCATCTTCAC Direct Loss 0.951405091720147 0 0.88495076 0 prediction 0.902810183440294 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422130 chr16:31422130 synonymous SNV . 0 21 hm5C_associated_SNPs_49571 0 0 0 0 2 nucleolus 0.500231643951697 0 0.76990152 0.000463287903393894 hm5C_site_4891 DeepMRMD:0.76990152;iRNA_m5C:0.000463287903393894 4892 chr1 26738031 26738031 1 + C T COAD 26738031 + 26738011 26738051 41 CTGTCCATGACCGCCCGCGCCGGGGTCGCGCTCGACCCCCC CTGTCCATGACCGCCCGCGCTGGGGTCGCGCTCGACCCCCC Direct Loss 0.951396593779411 0 0.90360594 0 prediction 0.902793187558822 Functional Loss - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26738031 chr1:26738031 synonymous SNV . 0 21 hm5C_associated_SNPs_49572 0 0 0 0 1 Nucleus 0.500231643886029 0 0.80721188 0.000463287772058507 hm5C_site_4892 DeepMRMD:0.80721188;iRNA_m5C:0.000463287772058507 4893 chr5 72419385 72419385 1 + C T STAD 72419385 + 72419365 72419405 41 CCCCATGGTGCTCAAGGTGGCGGGGCCTGCATGTGCCGTGG CCCCATGGTGCTCAAGGTGGTGGGGCCTGCATGTGCCGTGG Direct Loss 0.951381690742568 0 0.934555 0 prediction 0.902763381485136 Functional Loss - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72419385 chr5:72419385 nonsynonymous SNV 0.257 0 21 hm5C_associated_SNPs_49573 0 0 0 0 0 Ribosome 0.500231643921092 0 0.86911 0.000463287842184856 hm5C_site_4893 DeepMRMD:0.86911;iRNA_m5C:0.000463287842184856 4894 chr12 6884485 6884485 1 + C T LUSC 6884485 + 6884465 6884505 41 GTGTACGCTGGAGCAGGTTCCAGGGTGGGGCTGCCCTGCCG GTGTACGCTGGAGCAGGTTCTAGGGTGGGGCTGCCCTGCCG Direct Loss 0.951381596413221 0 0.9389186 0 prediction 0.902763192826441 Functional Loss - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6884485 chr12:6884485 synonymous SNV . 0 21 hm5C_associated_SNPs_49574 0 0 0 0 1 exosome 0.500231661164832 0 0.8778372 0.000463322329663951 hm5C_site_4894 DeepMRMD:0.8778372;iRNA_m5C:0.000463322329663951 4895 chr7 5112640 5112640 1 + C T LUAD 5112640 + 5112620 5112660 41 TGATGGGGCTGTGGTGGCCACGCGACCAGAAAGCCGGGGAG TGATGGGGCTGTGGTGGCCATGCGACCAGAAAGCCGGGGAG Direct Loss 0.951379567331778 0 0.8349507 0 prediction 0.902759134663556 Functional Loss - RBAKDN ENSG00000272968 CDS Human protein_coding chr7:5112640 chr7:5112640 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49575 0 0 0 0 1 unknown 0.500231643921092 0 0.6699014 0.000463287842184856 hm5C_site_4895 DeepMRMD:0.6699014;iRNA_m5C:0.000463287842184856 4896 chr19 39423062 39423062 1 + C T LUAD 39423062 + 39423042 39423082 41 GGCCCCCCAAGCGGCCGCCTCGGAAGCTGGGCCCCACGGAA GGCCCCCCAAGCGGCCGCCTTGGAAGCTGGGCCCCACGGAA Direct Loss 0.951354155377201 0 0.90272844 0 prediction 0.902708310754403 Functional Loss - MRPS12 ENSG00000128626 CDS Human protein_coding chr19:39423062 chr19:39423062 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_49576 0 0 1 0 1 Ribosome 0.500231643921092 0 0.80545688 0.000463287842184856 hm5C_site_4896 DeepMRMD:0.80545688;iRNA_m5C:0.000463287842184856 4897 chr5 140562796 140562796 1 + C A LUAD 140562796 + 140562776 140562816 41 GCTGGATGGTGGCTCTCCACCGCGATCTGGAACTGCTCAGG GCTGGATGGTGGCTCTCCACAGCGATCTGGAACTGCTCAGG Direct Loss 0.951342832061209 0 0.5662649 0 prediction 0.902685664122418 Functional Loss - PCDHB16 ENSG00000196963 CDS Human other chr5:140562796 chr5:140562796 nonsynonymous SNV 0.008 2 21 hm5C_associated_SNPs_49577 0 0 0 0 0 Nucleus 0.500231643921123 0 0.1325298 0.000463287842245697 hm5C_site_4897 DeepMRMD:0.1325298;iRNA_m5C:0.000463287842245697 4898 chr5 180258216 180258216 1 + C A rs111462360 180258216 + 180258196 180258236 41 CGCCGCCTCGGGGACCTTTGCGGGGAGGCCTCAGGTCAGCG CGCCGCCTCGGGGACCTTTGAGGGGAGGCCTCAGGTCAGCG Direct Loss 0.951328446766755 0 0.9327692 0 prediction 0.90265689353351 Functional Loss - HEIH;LINC00847 ENSG00000245060 ncRNA_exonic Human lincRNA chr5:180258216 chr5:180258216 . . 0 21 hm5C_associated_SNPs_49578 0 0 0 0 1 unknown 0.500231643921092 0 0.8655384 0.000463287842184856 hm5C_site_4898 DeepMRMD:0.8655384;iRNA_m5C:0.000463287842184856 4899 chr14 52781362 52781362 1 + C A UCEC 52781362 + 52781342 52781382 41 GCCATCAGCTCCGTCATGTTCTCGGCCGGGGTGCTGGGGAA GCCATCAGCTCCGTCATGTTATCGGCCGGGGTGCTGGGGAA Direct Loss 0.951326438767952 0 0.35301074 0 prediction 0.902652877535904 Functional Loss - PTGER2 ENSG00000125384 CDS Human protein_coding chr14:52781362 chr14:52781362 nonsynonymous SNV 0.802 2 21 hm5C_associated_SNPs_49579 0 0 0 0 0 exosome 0.500231643913707 0 0 0.000463287827413339 hm5C_site_4899 DeepMRMD:0;iRNA_m5C:0.000463287827413339 4900 chr6 27115050 27115050 1 + C T HNSC 27115050 + 27115030 27115070 41 CGAGCGGGTTGGAGCCGGCGCGCCAGTGTACCTGGCTGCGG CGAGCGGGTTGGAGCCGGCGTGCCAGTGTACCTGGCTGCGG Direct Loss 0.951317423438683 0 0.52916193 0 prediction 0.902634846877366 Functional Loss - HIST1H2AH ENSG00000184825 CDS Human other chr6:27115050 chr6:27115050 nonsynonymous SNV 0.185 3 21 hm5C_associated_SNPs_49580 0 0 1 0 0 cytosol 0.500231643922232 0 0.05832386 0.0004632878444637 hm5C_site_4900 DeepMRMD:0.05832386;iRNA_m5C:0.0004632878444637 4901 chrX 77359778 77359778 1 + C T rs192936390 77359778 + 77359758 77359798 41 CAAGCCTCCGGAGCGCACGTCGGCAGTCGGCTCCCTCGTTG CAAGCCTCCGGAGCGCACGTTGGCAGTCGGCTCCCTCGTTG Direct Loss 0.951311146211357 0 0.8177844 0 prediction 0.902622292422715 Functional Loss - PGK1 ENSG00000102144 UTR5 Human protein_coding chrX:77359778 chrX:77359778 . . 0 21 hm5C_associated_SNPs_49581 0 0 1 0 0 Ribosome 0.500231643637955 0 0.6355688 0.000463287275910051 hm5C_site_4901 DeepMRMD:0.6355688;iRNA_m5C:0.000463287275910051 4902 chr2 25042458 25042458 1 + G A rs112196584 25042458 - 25042438 25042478 41 GCCTTTGCCGCTGGGCTTTCCGGGACTGTGGAGGGAGCACA GCCTTTGCCGCTGGGCTTTCTGGGACTGTGGAGGGAGCACA Direct Loss 0.95130076177104 0 0.90368927 0 prediction 0.90260152354208 Functional Loss - ADCY3;CENPO ENSG00000138031;ENSG00000138092 UTR3 Human other chr2:25042458 chr2:25042458 . . 0 21 hm5C_associated_SNPs_49582 0 0 1 0 0 unknown 0.500231643921092 0 0.80737854 0.000463287842184412 hm5C_site_4902 DeepMRMD:0.80737854;iRNA_m5C:0.000463287842184412 4903 chrX 70444364 70444364 1 + C T KIRP 70444364 + 70444344 70444384 41 CTGCGCCGCAGCCCTGGCACCGGGGCTGGGCTGGCTGAAAA CTGCGCCGCAGCCCTGGCACTGGGGCTGGGCTGGCTGAAAA Direct Loss 0.951291511931614 0 0.89936996 0 prediction 0.902583023863228 Functional Loss - GJB1 ENSG00000169562 CDS Human protein_coding chrX:70444364 chrX:70444364 synonymous SNV . 0 21 hm5C_associated_SNPs_49583 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0 0.79873992 0.000463287842183746 hm5C_site_4903 DeepMRMD:0.79873992;iRNA_m5C:0.000463287842183746 4904 chr1 109289353 109289353 1 + C A rs1124427 109289353 + 109289333 109289373 41 TGGCTGCTGCTCCGCAGTGTCGGGAAGATGGCGCCGCCGGT TGGCTGCTGCTCCGCAGTGTAGGGAAGATGGCGCCGCCGGT Direct Loss 0.951287398807654 0 0.9114386 0 prediction 0.902574797615307 Functional Loss - STXBP3 ENSG00000116266 UTR5 Human protein_coding chr1:109289353 chr1:109289353 . . 0 21 hm5C_associated_SNPs_49584 0 0 1 0 0 Nucleus 0.50023164555583 0 0.8228772 0.000463291111659547 hm5C_site_4904 DeepMRMD:0.8228772;iRNA_m5C:0.000463291111659547 4905 chr9 4793123 4793123 1 + C G UCEC 4793123 + 4793103 4793143 41 GGCGCACTCCCTCAGCTACGCAGGGTGCAACTTCTTGCGCC GGCGCACTCCCTCAGCTACGGAGGGTGCAACTTCTTGCGCC Direct Loss 0.951273032905622 0 0.9341271 0 prediction 0.902546065811244 Functional Loss - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4793123 chr9:4793123 nonsynonymous SNV 0.960 0 21 hm5C_associated_SNPs_49585 0 0 1 0 0 Cytosol 0.500231643929125 0 0.8682542 0.000463287858249783 hm5C_site_4905 DeepMRMD:0.8682542;iRNA_m5C:0.000463287858249783 4906 chr16 31718407 31718407 1 + C A rs565961747 31718407 + 31718387 31718427 41 GGGAGAGAAGTGAGGGAAGCCGGCAGTCCCAGCCCTGTCAG GGGAGAGAAGTGAGGGAAGCAGGCAGTCCCAGCCCTGTCAG Direct Loss 0.951257439600286 0 0.9153917 0 prediction 0.902514879200572 Functional Loss - CLUHP3 ENSG00000131797 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:31718407 chr16:31718407 . . 0 21 hm5C_associated_SNPs_49586 0 0 1 0 0 unknown 0.500231643917836 0 0.8307834 0.000463287835672954 hm5C_site_4906 DeepMRMD:0.8307834;iRNA_m5C:0.000463287835672954 4907 chr2 62228006 62228006 1 + C T LUSC 62228006 + 62227986 62228026 41 AACCAGAGCCGCTGGAATAGCGGGCTTCGGGGCCTGAGCTG AACCAGAGCCGCTGGAATAGTGGGCTTCGGGGCCTGAGCTG Direct Loss 0.951255777280601 0 0.9010864 0 prediction 0.902511554561201 Functional Loss - COMMD1 ENSG00000173163 CDS Human protein_coding chr2:62228006 chr2:62228006 synonymous SNV . 0 21 hm5C_associated_SNPs_49587 0 0 0 0 0 Cytosol 0.500231643921092 0 0.8021728 0.000463287842184856 hm5C_site_4907 DeepMRMD:0.8021728;iRNA_m5C:0.000463287842184856 4908 chr19 11040133 11040133 1 + C T SARC 11040133 + 11040113 11040153 41 GGGTGCTGGGGGCCTGGATGCGCGACTGCGACATCAACGAC GGGTGCTGGGGGCCTGGATGTGCGACTGCGACATCAACGAC Direct Loss 0.95124525532643 0 0.34704983 0 prediction 0.90249051065286 Functional Loss - TIMM29 ENSG00000142444 CDS Human protein_coding chr19:11040133 chr19:11040133 nonsynonymous SNV 0.164 2 21 hm5C_associated_SNPs_49588 0 0 1 0 0 unknown 0.500231643639601 0 0 0.000463287279201419 hm5C_site_4908 DeepMRMD:0;iRNA_m5C:0.000463287279201419 4909 chr5 140431659 140431659 1 + C T HNSC 140431659 + 140431639 140431679 41 TGCTGAACAAACCCCTGGACCGAGAGGAGCAGCCTGAAGTC TGCTGAACAAACCCCTGGACTGAGAGGAGCAGCCTGAAGTC Direct Loss 0.951244318400502 0 0.8959511 0 prediction 0.902488636801005 Functional Loss - PCDHB1 ENSG00000171815 CDS Human protein_coding chr5:140431659 chr5:140431659 stopgain 0.987 1 21 hm5C_associated_SNPs_49589 0 0 0 0 0 unknown 0.500231617391976 0 0.7919022 0.000463234783952604 hm5C_site_4909 DeepMRMD:0.7919022;iRNA_m5C:0.000463234783952604 4910 chr16 2255222 2255222 1 + C A rs27425 2255222 + 2255202 2255242 41 AACAGCGCGACCCGACAGCCCGGGAAACGGACAGCCGTGTC AACAGCGCGACCCGACAGCCAGGGAAACGGACAGCCGTGTC Direct Loss 0.95123893799436 0 0.82648873 0 prediction 0.90247787598872 Functional Loss - MLST8 ENSG00000167965 UTR5 Human protein_coding chr16:2255222 chr16:2255222 . . 0 21 hm5C_associated_SNPs_49590 0 0 0 0 0 chromatin 0.500231648866929 0 0.65297746 0.000463297733857004 hm5C_site_4910 DeepMRMD:0.65297746;iRNA_m5C:0.000463297733857004 4911 chr2 177017871 177017871 1 + C G rs1063657 177017871 + 177017851 177017891 41 GATGGGGATGGGAGGGGGGGCGGGATTCTCTCTCTAAGTAT GATGGGGATGGGAGGGGGGGGGGGATTCTCTCTCTAAGTAT Direct Loss 0.951215739833494 0 0.90341794 0 prediction 0.902431479666987 Functional Loss - HOXD4 ENSG00000170166 UTR3 Human protein_coding chr2:177017871 chr2:177017871 . . 0 21 hm5C_associated_SNPs_49591 0 0 1 0 0 exosome 0.500231643921092 0 0.80683588 0.000463287842184856 hm5C_site_4911 DeepMRMD:0.80683588;iRNA_m5C:0.000463287842184856 4912 chr1 150121864 150121864 1 + C A rs587680782 150121864 + 150121844 150121884 41 CCACTGGGCCCCGGGGCGGCCGGCGGCCGGGTCTCTCGGGC CCACTGGGCCCCGGGGCGGCAGGCGGCCGGGTCTCTCGGGC Direct Loss 0.95121342032709 0 0.8753573 0 prediction 0.90242684065418 Functional Loss - PLEKHO1 ENSG00000023902 UTR5 Human protein_coding chr1:150121864 chr1:150121864 . . 0 21 hm5C_associated_SNPs_49592 0 0 0 0 0 Ribosome 0.500231643919739 0 0.7507146 0.000463287839478799 hm5C_site_4912 DeepMRMD:0.7507146;iRNA_m5C:0.000463287839478799 4913 chr13 111160490 111160490 1 + G T LUAD 111160490 - 111160470 111160510 41 GAGACATCCTGACTGTGGACCGCGATGGCGATGGCCGGGGC GAGACATCCTGACTGTGGACAGCGATGGCGATGGCCGGGGC Direct Loss 0.951213306929498 0 0.63151795 0 prediction 0.902426613858996 Functional Loss - COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111160490 chr13:111160490 synonymous SNV . 0 21 hm5C_associated_SNPs_49593 0 0 0 0 1 Cytosol 0.500231644641549 0 0.2630359 0.000463289283097357 hm5C_site_4913 DeepMRMD:0.2630359;iRNA_m5C:0.000463289283097357 4914 chr14 100182183 100182183 1 + C T STAD 100182183 + 100182163 100182203 41 GGAAGCAGCTCCGGGAGGTCCGGGAGAGCATTCGCTTCCTG GGAAGCAGCTCCGGGAGGTCTGGGAGAGCATTCGCTTCCTG Direct Loss 0.951177990003852 0 0.9177474 0 prediction 0.902355980007704 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100182183 chr14:100182183 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_49594 0 0 1 0 1 exosome 0.500231643921095 0 0.8354948 0.000463287842189963 hm5C_site_4914 DeepMRMD:0.8354948;iRNA_m5C:0.000463287842189963 4915 chr1 45267308 45267308 1 + C T BLCA 45267308 + 45267288 45267328 41 CTGCAGTCCCTGGCCCACATCTGGAAGGCCCGGCACACCCT CTGCAGTCCCTGGCCCACATTTGGAAGGCCCGGCACACCCT Direct Loss 0.951173566421995 0 0.86879706 0 prediction 0.90234713284399 Functional Loss - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267308 chr1:45267308 synonymous SNV . 0 21 hm5C_associated_SNPs_49595 0 0 1 0 1 Cytosol 0.500231643944698 0 0.73759412 0.000463287889395536 hm5C_site_4915 DeepMRMD:0.73759412;iRNA_m5C:0.000463287889395536 4916 chr5 162896698 162896698 1 + C T UCEC 162896698 + 162896678 162896718 41 AGGACAGGCGGATCCAGGATCTGGAAACTGAGTTGGAAAAG AGGACAGGCGGATCCAGGATTTGGAAACTGAGTTGGAAAAG Direct Loss 0.951160264218072 0 0.8599122 0 prediction 0.902320528436144 Functional Loss - HMMR ENSG00000072571 CDS Human protein_coding chr5:162896698 chr5:162896698 synonymous SNV . 0 21 hm5C_associated_SNPs_49596 0 0 1 0 1 Cytosol 0.500231644758014 0 0.7198244 0.000463289516028809 hm5C_site_4916 DeepMRMD:0.7198244;iRNA_m5C:0.000463289516028809 4917 chr11 49053515 49053515 1 + C T PAAD 49053515 + 49053495 49053535 41 GCTCCAGCTCTCAGGAGCACCGGGATCACAGACACTGTCCC GCTCCAGCTCTCAGGAGCACTGGGATCACAGACACTGTCCC Direct Loss 0.951141327871058 0 0.87448835 0 prediction 0.902282655742116 Functional Loss - TRIM49B ENSG00000182053 CDS Human protein_coding chr11:49053515 chr11:49053515 nonsynonymous SNV 0.101 1 21 hm5C_associated_SNPs_49597 0 0 0 0 1 unknown 0.50023161576044 0 0.7489767 0.000463231520879015 hm5C_site_4917 DeepMRMD:0.7489767;iRNA_m5C:0.000463231520879015 4918 chr11 123886677 123886677 1 + C A LUSC 123886677 + 123886657 123886697 41 AGTTACCCGCTCAGGTACACCAGCATGATGAGTGGGAGCAG AGTTACCCGCTCAGGTACACAAGCATGATGAGTGGGAGCAG Direct Loss 0.951136103708009 0 0.24824756 0 prediction 0.902272207416019 Functional Loss - OR10G4 ENSG00000254737 CDS Human protein_coding chr11:123886677 chr11:123886677 synonymous SNV . 0 21 hm5C_associated_SNPs_49598 0 0 0 0 0 unknown 0.50023156420111 0 0 0.000463128402220736 hm5C_site_4918 DeepMRMD:0;iRNA_m5C:0.000463128402220736 4919 chr1 4484516 4484516 1 + C T rs114754671 4484516 + 4484496 4484536 41 GCCAGGTGGCAAGGGGTTCTCGGAGAAACTCCAGCCGGCCT GCCAGGTGGCAAGGGGTTCTTGGAGAAACTCCAGCCGGCCT Direct Loss 0.951133373473901 0 0.9559133 0 prediction 0.902266746947803 Functional Loss - LINC01777 ENSG00000235054 ncRNA_exonic Human lincRNA chr1:4484516 chr1:4484516 . . 0 21 hm5C_associated_SNPs_49599 0 0 0 0 0 unknown 0.500231643921092 0 0.9118266 0.000463287842184856 hm5C_site_4919 DeepMRMD:0.9118266;iRNA_m5C:0.000463287842184856 4920 chr16 69963428 69963428 1 + C T HNSC 69963428 + 69963408 69963448 41 AGTGGGAGGATCCCCGGACCCAGGGGTAAGGACTTGGGCTG AGTGGGAGGATCCCCGGACCTAGGGGTAAGGACTTGGGCTG Direct Loss 0.951124492602401 0 0.9362266 0 prediction 0.902248985204801 Functional Loss - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69963428 chr16:69963428 stopgain 0.978 1 21 hm5C_associated_SNPs_49600 0 0 1 0 2 Ribosome 0.500231643921092 0 0.8724532 0.000463287842184856 hm5C_site_4920 DeepMRMD:0.8724532;iRNA_m5C:0.000463287842184856 4921 chr7 48081094 48081094 1 + C T BLCA 48081094 + 48081074 48081114 41 GATTCGGAATATGTGAAGCTCGCGAAACAAGGTGGCAGGCC GATTCGGAATATGTGAAGCTTGCGAAACAAGGTGGCAGGCC Direct Loss 0.951100937215168 0 0.85387546 0 prediction 0.902201874430337 Functional Loss - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48081094 chr7:48081094 synonymous SNV . 0 21 hm5C_associated_SNPs_49601 0 0 0 0 1 exosome 0.500231643921092 0 0.70775092 0.000463287842184412 hm5C_site_4921 DeepMRMD:0.70775092;iRNA_m5C:0.000463287842184412 4922 chr1 244218085 244218085 1 + C T LUSC 244218085 + 244218065 244218105 41 CGGTCTTGAGGGAGCTGGACCGGGAGGACAAAGCCAGTGAT CGGTCTTGAGGGAGCTGGACTGGGAGGACAAAGCCAGTGAT Direct Loss 0.95103191137855 0 0.86574876 0 prediction 0.9020638227571 Functional Loss - ZBTB18 ENSG00000179456 CDS Human protein_coding chr1:244218085 chr1:244218085 nonsynonymous SNV 0.986 3 21 hm5C_associated_SNPs_49602 0 0 1 0 0 Cytosol 0.500231643864098 0 0.73149752 0.00046328772819515 hm5C_site_4922 DeepMRMD:0.73149752;iRNA_m5C:0.00046328772819515 4923 chr16 3063894 3063894 1 + C T BLCA 3063894 + 3063874 3063914 41 GCTGCACTGCTTATGCTGGGCGGGGGGCTCCTCTGCTGCAC GCTGCACTGCTTATGCTGGGTGGGGGGCTCCTCTGCTGCAC Direct Loss 0.951031520002206 0 0.928161 0 prediction 0.902063040004411 Functional Loss - CLDN9 ENSG00000213937 CDS Human protein_coding chr16:3063894 chr16:3063894 synonymous SNV . 0 21 hm5C_associated_SNPs_49603 0 0 0 0 0 exosome 0.500231643921092 0 0.856322 0.000463287842184856 hm5C_site_4923 DeepMRMD:0.856322;iRNA_m5C:0.000463287842184856 4924 chr3 46539601 46539601 1 + C T STAD 46539601 + 46539581 46539621 41 AAATGTTTCAGGAGTTAATGCGGGAGGTGAAGCCATGGCAC AAATGTTTCAGGAGTTAATGTGGGAGGTGAAGCCATGGCAC Direct Loss 0.951024866465782 0 0.92100924 0 prediction 0.902049732931565 Functional Loss - RTP3 ENSG00000163825 CDS Human protein_coding chr3:46539601 chr3:46539601 nonsynonymous SNV 0.023 1 21 hm5C_associated_SNPs_49604 0 0 0 0 0 exosome 0.500231641410942 0 0.84201848 0.000463282821884459 hm5C_site_4924 DeepMRMD:0.84201848;iRNA_m5C:0.000463282821884459 4925 chr1 101704999 101704999 1 + C T UCEC 101704999 + 101704979 101705019 41 CTGAAAATGAAACTCCACAACGGGAGCAATAACTTCCGCCT CTGAAAATGAAACTCCACAATGGGAGCAATAACTTCCGCCT Direct Loss 0.951023368209246 0 0.9354294 0 prediction 0.902046736418493 Functional Loss - S1PR1 ENSG00000170989 CDS Human protein_coding chr1:101704999 chr1:101704999 synonymous SNV . 0 21 hm5C_associated_SNPs_49605 0 0 0 0 0 Endoplasmic reticulum 0.500231643921505 0 0.8708588 0.000463287843009086 hm5C_site_4925 DeepMRMD:0.8708588;iRNA_m5C:0.000463287843009086 4926 chr22 44370668 44370668 1 + C T rs73434653 44370668 + 44370648 44370688 41 ACCCACAGTGGTCGGGCTCCCGGGAGCTTAGCCACCCTTCT ACCCACAGTGGTCGGGCTCCTGGGAGCTTAGCCACCCTTCT Direct Loss 0.951011930972714 0 0.9441681 0 prediction 0.902023861945428 Functional Loss - SAMM50 ENSG00000100347 intronic Human protein_coding chr22:44370668 chr22:44370668 . . 0 21 hm5C_associated_SNPs_49606 0 0 1 0 0 Cytosol 0.500231643921092 0 0.8883362 0.000463287842184856 hm5C_site_4926 DeepMRMD:0.8883362;iRNA_m5C:0.000463287842184856 4927 chr1 162762467 162762467 1 + C A CESC 162762467 + 162762447 162762487 41 AGTGGCATTGGCCTGGCCCTCTGCAAGCGGCTGCTGGCGGA AGTGGCATTGGCCTGGCCCTATGCAAGCGGCTGCTGGCGGA Direct Loss 0.951011258241569 0 0.3871622 0 prediction 0.902022516483139 Functional Loss - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162762467 chr1:162762467 synonymous SNV . 0 21 hm5C_associated_SNPs_49607 0 0 1 0 1 Endoplasmic reticulum 0.500231643921405 0 0 0.000463287842809468 hm5C_site_4927 DeepMRMD:0;iRNA_m5C:0.000463287842809468 4928 chr3 12858210 12858210 1 + C A COAD 12858210 + 12858190 12858230 41 GTGAAGGAGCGGGCCATTTCCTGCATGGGCCACCTTGTAGG GTGAAGGAGCGGGCCATTTCATGCATGGGCCACCTTGTAGG Direct Loss 0.950990533368321 0 0.87561285 0 prediction 0.901981066736643 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12858210 chr3:12858210 synonymous SNV . 0 21 hm5C_associated_SNPs_49608 0 0 0 0 0 chromatin 0.500231643921092 0 0.7512257 0.000463287842184856 hm5C_site_4928 DeepMRMD:0.7512257;iRNA_m5C:0.000463287842184856 4929 chr2 233394711 233394711 1 + C T CESC 233394711 + 233394691 233394731 41 ACGTGGACCCCAGAGCCCCTCTGGACAGCCCCAGCCGCCAG ACGTGGACCCCAGAGCCCCTTTGGACAGCCCCAGCCGCCAG Direct Loss 0.950988937862671 0 0.2535199 0 prediction 0.901977875725341 Functional Loss - CHRND ENSG00000135902 CDS Human protein_coding chr2:233394711 chr2:233394711 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49609 0 0 0 0 1 unknown 0.500231643921093 0 0 0.0004632878421853 hm5C_site_4929 DeepMRMD:0;iRNA_m5C:0.0004632878421853 4930 chr22 17983959 17983959 1 + C T COAD 17983959 + 17983939 17983979 41 GACAGGTCACCGAGAGTTTTCGCGAGAGGACCTCCCTTCGA GACAGGTCACCGAGAGTTTTTGCGAGAGGACCTCCCTTCGA Direct Loss 0.950976672052574 0 0.90664196 0 prediction 0.901953344105147 Functional Loss - CECR2 ENSG00000099954 CDS Human protein_coding chr22:17983959 chr22:17983959 nonsynonymous SNV 0.902 4 21 hm5C_associated_SNPs_49610 0 0 1 0 1 nucleoplasm 0.500231643921092 0 0.81328392 0.000463287842184856 hm5C_site_4930 DeepMRMD:0.81328392;iRNA_m5C:0.000463287842184856 4931 chr6 3850194 3850194 1 + C T UCEC 3850194 + 3850174 3850214 41 GCAGGTGGACAAGAGGTTCTCGGCGCATTACGACGCCGTGG GCAGGTGGACAAGAGGTTCTTGGCGCATTACGACGCCGTGG Direct Loss 0.950970345865168 0 0.9236522 0 prediction 0.901940691730336 Functional Loss - FAM50B ENSG00000145945 CDS Human protein_coding chr6:3850194 chr6:3850194 nonsynonymous SNV 0.922 1 21 hm5C_associated_SNPs_49611 0 0 0 0 0 exosome 0.500231643921092 0 0.8473044 0.000463287842184856 hm5C_site_4931 DeepMRMD:0.8473044;iRNA_m5C:0.000463287842184856 4932 chr4 103790183 103790183 1 + C A rs548270434 103790183 + 103790163 103790203 41 GCTTCCGCTCCCGGCGCAGGCGCGGCAGCTTGGCCAGAGCG GCTTCCGCTCCCGGCGCAGGAGCGGCAGCTTGGCCAGAGCG Direct Loss 0.950963740786999 0 0.8822123 0 prediction 0.901927481573998 Functional Loss - CISD2 ENSG00000145354 UTR5 Human protein_coding chr4:103790183 chr4:103790183 . . 0 21 hm5C_associated_SNPs_49612 0 0 1 0 0 Ribosome 0.500231643921092 0 0.7644246 0.000463287842184856 hm5C_site_4932 DeepMRMD:0.7644246;iRNA_m5C:0.000463287842184856 4933 chr16 77859314 77859314 1 + C G LUSC 77859314 + 77859294 77859334 41 TGTTTGAAGTTGCCAACCTCCGGGAAGGGATGTCTGTGCTC TGTTTGAAGTTGCCAACCTCGGGGAAGGGATGTCTGTGCTC Direct Loss 0.950959774111647 0 0.44467834 0 prediction 0.901919548223294 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77859314 chr16:77859314 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49613 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4933 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4934 chr19 56203242 56203242 1 + C T SKCM 56203242 + 56203222 56203262 41 GCTGCCCCCACCTCGGACCCCTGGGGCGGCCCCCCTGTCCC GCTGCCCCCACCTCGGACCCTTGGGGCGGCCCCCCTGTCCC Direct Loss 0.950958773069961 0 0.9170138 0 prediction 0.901917546139921 Functional Loss - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56203242 chr19:56203242 synonymous SNV . 0 21 hm5C_associated_SNPs_49614 0 0 1 0 0 chromatin 0.500231628681449 0 0.8340276 0.000463257362897096 hm5C_site_4934 DeepMRMD:0.8340276;iRNA_m5C:0.000463257362897096 4935 chr1 247588117 247588117 1 + C A LUAD 247588117 + 247588097 247588137 41 TGCAGCCCCGGGGAGGGAGCCAGGAGCACGGCCTCTGCGCC TGCAGCCCCGGGGAGGGAGCAAGGAGCACGGCCTCTGCGCC Direct Loss 0.950942864672033 0 0.93486154 0 prediction 0.901885729344065 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247588117 chr1:247588117 nonsynonymous SNV 0.007 1 21 hm5C_associated_SNPs_49615 0 0 0 0 0 Nucleus 0.500231643921158 0 0.86972308 0.000463287842315863 hm5C_site_4935 DeepMRMD:0.86972308;iRNA_m5C:0.000463287842315863 4936 chr5 140625750 140625750 1 + C T SKCM 140625750 + 140625730 140625770 41 TGCTGGACACAGAACTGGATCGCGAGGAGCAGGCCGAGCTC TGCTGGACACAGAACTGGATTGCGAGGAGCAGGCCGAGCTC Direct Loss 0.950940934999058 0 0.83531725 0 prediction 0.901881869998116 Functional Loss - PCDHB15 ENSG00000113248 CDS Human protein_coding chr5:140625750 chr5:140625750 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_49616 0 0 0 0 0 exosome 0.500231643921088 0 0.6706345 0.000463287842175308 hm5C_site_4936 DeepMRMD:0.6706345;iRNA_m5C:0.000463287842175308 4937 chr1 1269065 1269065 1 + C T HNSC 1269065 + 1269045 1269085 41 TGGGGCTGTTCGTTCACCATCGGGACAGCCCACTGGTTCAG TGGGGCTGTTCGTTCACCATTGGGACAGCCCACTGGTTCAG Direct Loss 0.950933227233103 0 0.9206808 0 prediction 0.901866454466207 Functional Loss - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1269065 chr1:1269065 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_49617 0 0 0 0 0 chromatin 0.500231643921421 0 0.8413616 0.000463287842841664 hm5C_site_4937 DeepMRMD:0.8413616;iRNA_m5C:0.000463287842841664 4938 chr13 113765066 113765066 1 + C A UCEC 113765066 + 113765046 113765086 41 GCCGGCGCGCCAACGCGTTCCTGGAGGAGCTGCGGCCGGGC GCCGGCGCGCCAACGCGTTCATGGAGGAGCTGCGGCCGGGC Direct Loss 0.950931757681112 0 0.8799926 0 prediction 0.901863515362225 Functional Loss - F7 ENSG00000057593 CDS Human protein_coding chr13:113765066 chr13:113765066 nonsynonymous SNV 0.474 2 21 hm5C_associated_SNPs_49618 0 0 1 0 2 insoluble cytoplasm 0.500231648467638 0 0.7599852 0.000463296935275137 hm5C_site_4938 DeepMRMD:0.7599852;iRNA_m5C:0.000463296935275137 4939 chr8 128750803 128750803 1 + C T DLBC 128750803 + 128750783 128750823 41 GCTTCTCCACGGCCGACCAGCTGGAGATGGTGACCGAGCTG GCTTCTCCACGGCCGACCAGTTGGAGATGGTGACCGAGCTG Direct Loss 0.95092246554177 0 0.8872478 0 prediction 0.90184493108354 Functional Loss - MYC ENSG00000136997 CDS Human protein_coding chr8:128750803 chr8:128750803 synonymous SNV . 0 21 hm5C_associated_SNPs_49619 0 0 1 0 0 Cytosol 0.500231643921169 0 0.7744956 0.000463287842338511 hm5C_site_4939 DeepMRMD:0.7744956;iRNA_m5C:0.000463287842338511 4940 chr8 145745377 145745377 1 + C A STAD 145745377 + 145745357 145745397 41 AGAGCATGCAGGCTGTTATCCTGGGGCTGACTGCCCGGCTC AGAGCATGCAGGCTGTTATCATGGGGCTGACTGCCCGGCTC Direct Loss 0.950918882663841 0 0.9423547 0 prediction 0.901837765327682 Functional Loss - LRRC14 ENSG00000160959 CDS Human protein_coding chr8:145745377 chr8:145745377 nonsynonymous SNV 0.990 1 21 hm5C_associated_SNPs_49620 0 0 1 0 1 chromatin 0.500231643607021 0 0.8847094 0.000463287214041097 hm5C_site_4940 DeepMRMD:0.8847094;iRNA_m5C:0.000463287214041097 4941 chr3 113666878 113666878 1 + C T rs538204217 113666878 + 113666858 113666898 41 TCACAGGTGGGCGGCTGCGGCGAGGGAGCGGCCGAGCGGAG TCACAGGTGGGCGGCTGCGGTGAGGGAGCGGCCGAGCGGAG Direct Loss 0.950915998650089 0 0.8882663 0 prediction 0.901831997300178 Functional Loss - ZDHHC23 ENSG00000184307 UTR5 Human protein_coding chr3:113666878 chr3:113666878 . . 0 21 hm5C_associated_SNPs_49621 0 0 1 0 0 Nucleus 0.500231643921005 0 0.7765326 0.000463287842010995 hm5C_site_4941 DeepMRMD:0.7765326;iRNA_m5C:0.000463287842010995 4942 chr7 24324937 24324937 1 + C T COAD 24324937 + 24324917 24324957 41 GTGTGCCTGGGTGCGCTGGCCGAGGCGTACCCCTCCAAGCC GTGTGCCTGGGTGCGCTGGCTGAGGCGTACCCCTCCAAGCC Direct Loss 0.950912351802425 0 0.89863366 0 prediction 0.901824703604849 Functional Loss - NPY ENSG00000122585 CDS Human protein_coding chr7:24324937 chr7:24324937 synonymous SNV . 0 21 hm5C_associated_SNPs_49622 0 0 0 0 1 exosome 0.500231643921092 0 0.79726732 0.000463287842184856 hm5C_site_4942 DeepMRMD:0.79726732;iRNA_m5C:0.000463287842184856 4943 chr3 13612278 13612278 1 + C T STAD 13612278 + 13612258 13612298 41 GGCCAGGTGGGCTGCGTCCACGCGGGCCACAAGTACGCCGC GGCCAGGTGGGCTGCGTCCATGCGGGCCACAAGTACGCCGC Direct Loss 0.950905371181536 0 0.88746727 0 prediction 0.901810742363071 Functional Loss - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13612278 chr3:13612278 synonymous SNV . 0 21 hm5C_associated_SNPs_49623 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.77493454 0.000463287842184856 hm5C_site_4943 DeepMRMD:0.77493454;iRNA_m5C:0.000463287842184856 4944 chr10 50534364 50534364 1 + C T rs577902200 50534364 + 50534344 50534384 41 GAGCCTGTCGGGAGGCGGCCCGGGGGCCCCCAGTCCCTCAC GAGCCTGTCGGGAGGCGGCCTGGGGGCCCCCAGTCCCTCAC Direct Loss 0.950901536254566 0 0.9363859 0 prediction 0.901803072509133 Functional Loss - C10orf71 ENSG00000177354 CDS Human protein_coding chr10:50534364 chr10:50534364 synonymous SNV . 0 21 hm5C_associated_SNPs_49624 0 0 0 0 0 chromatin 0.500231643921097 0 0.8727718 0.000463287842193072 hm5C_site_4944 DeepMRMD:0.8727718;iRNA_m5C:0.000463287842193072 4945 chr22 39482371 39482371 1 + C G rs17496046 39482371 + 39482351 39482391 41 TTTGGAAGCTGGACCTGGACCAGGACTACAGGGTTACCTGC TTTGGAAGCTGGACCTGGACGAGGACTACAGGGTTACCTGC Direct Loss 0.950898479328336 0 0.4621124 0 prediction 0.901796958656672 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39482371 chr22:39482371 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_49625 0 0 0 0 1 Cytosol 0.500231643921093 0 0 0.000463287842185078 hm5C_site_4945 DeepMRMD:0;iRNA_m5C:0.000463287842185078 4946 chr3 196386885 196386885 1 + C T UCEC 196386885 + 196386865 196386905 41 CTCAGAGAACTACGAAGAGACGGCAGCCGCCCTCCACGCCC CTCAGAGAACTACGAAGAGATGGCAGCCGCCCTCCACGCCC Direct Loss 0.950885604272451 0 0.28060555 0 prediction 0.901771208544902 Functional Loss - NRROS ENSG00000174004 CDS Human protein_coding chr3:196386885 chr3:196386885 nonsynonymous SNV 0.003 2 21 hm5C_associated_SNPs_49626 0 0 0 0 0 chromatin 0.500231643921088 0 0 0.000463287842176641 hm5C_site_4946 DeepMRMD:0;iRNA_m5C:0.000463287842176641 4947 chr20 45700876 45700876 1 + C T UCEC 45700876 + 45700856 45700896 41 CTGGGCAACGCAGCCGGTTTCGGGAGTGTGCACCAGGTAGA CTGGGCAACGCAGCCGGTTTTGGGAGTGTGCACCAGGTAGA Direct Loss 0.950880158136193 0 0.93914956 0 prediction 0.901760316272387 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45700876 chr20:45700876 synonymous SNV . 0 21 hm5C_associated_SNPs_49627 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0 0.87829912 0.000463287842184856 hm5C_site_4947 DeepMRMD:0.87829912;iRNA_m5C:0.000463287842184856 4948 chr6 41029194 41029194 1 + C A HNSC 41029194 + 41029174 41029214 41 GGGGCCAAGTGCAGGCATCTCGGGGATACCTAGAGGATGAG GGGGCCAAGTGCAGGCATCTAGGGGATACCTAGAGGATGAG Direct Loss 0.950867947688572 0 0.9116868 0 prediction 0.901735895377143 Functional Loss - APOBEC2 ENSG00000124701 CDS Human protein_coding chr6:41029194 chr6:41029194 synonymous SNV . 0 21 hm5C_associated_SNPs_49628 0 0 0 0 0 chromatin 0.500231643921096 0 0.8233736 0.000463287842191518 hm5C_site_4948 DeepMRMD:0.8233736;iRNA_m5C:0.000463287842191518 4949 chr20 55099997 55099997 1 + C T UCEC 55099997 + 55099977 55100017 41 ACGGAGAGCACTTTCGGATTCGGCAGAATCTACCAGAGCAC ACGGAGAGCACTTTCGGATTTGGCAGAATCTACCAGAGCAC Direct Loss 0.950862641624788 0 0.69729114 0 prediction 0.901725283249576 Functional Loss - FAM209A ENSG00000124103 CDS Human protein_coding chr20:55099997 chr20:55099997 nonsynonymous SNV 0.010 3 21 hm5C_associated_SNPs_49629 0 0 1 0 0 exosome 0.500231628086386 0 0.39458228 0.000463256172772208 hm5C_site_4949 DeepMRMD:0.39458228;iRNA_m5C:0.000463256172772208 4950 chr11 1959713 1959713 1 + C T UCEC 1959713 + 1959693 1959733 41 AAGGGCAAAGTCGGCGGGCGCTGGAAGTAGAGAGGCCAGAA AAGGGCAAAGTCGGCGGGCGTTGGAAGTAGAGAGGCCAGAA Direct Loss 0.950853081199275 0 0.7810682 0 prediction 0.901706162398551 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1959713 chr11:1959713 synonymous SNV . 0 21 hm5C_associated_SNPs_49630 0 0 0 0 1 exosome 0.500231643921092 0 0.5621364 0.000463287842184856 hm5C_site_4950 DeepMRMD:0.5621364;iRNA_m5C:0.000463287842184856 4951 chrX 73524122 73524122 1 + C T CESC 73524122 + 73524102 73524142 41 ATGAGCAGTAAGGATTTCTTCGCGTGTGGACACTCTGGCCA ATGAGCAGTAAGGATTTCTTTGCGTGTGGACACTCTGGCCA Direct Loss 0.950851945125644 0 0.29447877 0 prediction 0.901703890251287 Functional Loss - ZCCHC13 ENSG00000187969 CDS Human protein_coding chrX:73524122 chrX:73524122 synonymous SNV . 0 21 hm5C_associated_SNPs_49631 0 0 0 0 0 unknown 0.500231644025843 0 0 0.000463288051686384 hm5C_site_4951 DeepMRMD:0;iRNA_m5C:0.000463288051686384 4952 chr15 90610585 90610585 1 + C T GBM 90610585 + 90610565 90610605 41 GTCTACCAGCTGGCCTGCAACGGGAGGGCCTTGGAGGAGCC GTCTACCAGCTGGCCTGCAATGGGAGGGCCTTGGAGGAGCC Direct Loss 0.950845286024423 0 0.9148462 0 prediction 0.901690572048846 Functional Loss - ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90610585 chr15:90610585 synonymous SNV . 0 21 hm5C_associated_SNPs_49632 0 0 0 0 0 Endoplasmic reticulum 0.500231643850658 0 0.8296924 0.000463287701315984 hm5C_site_4952 DeepMRMD:0.8296924;iRNA_m5C:0.000463287701315984 4953 chr18 12254395 12254395 1 + C A rs141822984 12254395 + 12254375 12254415 41 TCCGCGCCATGGAGGCCGCCCGGGACTATGCAGGAGCCCTC TCCGCGCCATGGAGGCCGCCAGGGACTATGCAGGAGCCCTC Direct Loss 0.950842615528848 0 0.86951 0 prediction 0.901685231057697 Functional Loss - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12254395 chr18:12254395 synonymous SNV . 0 21 hm5C_associated_SNPs_49633 0 0 0 0 0 unknown 0.500231652535359 0 0.73902 0.000463305070718789 hm5C_site_4953 DeepMRMD:0.73902;iRNA_m5C:0.000463305070718789 4954 chr19 8841649 8841649 1 + C T HNSC 8841649 + 8841629 8841669 41 AGATGGCATCAGACTTTCTGCGGGGAGAAGGTGCCACCTCC AGATGGCATCAGACTTTCTGTGGGGAGAAGGTGCCACCTCC Direct Loss 0.950836433670727 0 0.90199393 0 prediction 0.901672867341454 Functional Loss - OR2Z1 ENSG00000181733 CDS Human protein_coding chr19:8841649 chr19:8841649 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49634 0 0 0 0 0 unknown 0.500231643921093 0 0.80398786 0.000463287842185078 hm5C_site_4954 DeepMRMD:0.80398786;iRNA_m5C:0.000463287842185078 4955 chr10 95326931 95326931 1 + C T UCEC 95326931 + 95326911 95326951 41 GCGGCGTGCGGGGTCCTGGGCGGCGGGCGCGGGCAGTGCTG GCGGCGTGCGGGGTCCTGGGTGGCGGGCGCGGGCAGTGCTG Direct Loss 0.950829995613304 0 0.90563095 0 prediction 0.901659991226608 Functional Loss - FFAR4 ENSG00000186188 CDS Human protein_coding chr10:95326931 chr10:95326931 nonsynonymous SNV 0.009 1 21 hm5C_associated_SNPs_49635 0 0 0 0 0 cytosol 0.5002316438989 0 0.8112619 0.000463287797800582 hm5C_site_4955 DeepMRMD:0.8112619;iRNA_m5C:0.000463287797800582 4956 chr12 56631000 56631000 1 + C T CESC 56631000 + 56630980 56631020 41 GCTGCTGCTGAGCCTCGTGTCTGGAGCCCTGGGATTGGGGG GCTGCTGCTGAGCCTCGTGTTTGGAGCCCTGGGATTGGGGG Direct Loss 0.950825075078229 0 0.32556024 0 prediction 0.901650150156459 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56631000 chr12:56631000 nonsynonymous SNV 0.981 4 21 hm5C_associated_SNPs_49636 0 0 0 0 1 cytosol 0.500229903851935 0 0 0.00045980770386933 hm5C_site_4956 DeepMRMD:0;iRNA_m5C:0.00045980770386933 4957 chr17 34948363 34948363 1 + C T rs551715766 34948363 + 34948343 34948383 41 AAGCAGGTCGGCGGCGGCGGCAGGAGAGCGGCCGGGCGTCA AAGCAGGTCGGCGGCGGCGGTAGGAGAGCGGCCGGGCGTCA Direct Loss 0.950821011322831 0 0.90644944 0 prediction 0.901642022645662 Functional Loss - DHRS11 ENSG00000108272 UTR5 Human other chr17:34948363 chr17:34948363 . . 0 21 hm5C_associated_SNPs_49637 0 0 1 0 0 Cytosol 0.500231644556422 0 0.81289888 0.000463289112843102 hm5C_site_4957 DeepMRMD:0.81289888;iRNA_m5C:0.000463289112843102 4958 chr20 42695404 42695404 1 + C T rs149010935 42695404 + 42695384 42695424 41 CTCTGAGTTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCC CTCTGAGTTCCCCAGCAGCTTGGGATCCTGCTCACCTGGCC Direct Loss 0.950819375350944 0 0.916584 0 prediction 0.901638750701889 Functional Loss - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695404 chr20:42695404 nonsynonymous SNV 0.573 0 21 hm5C_associated_SNPs_49638 0 0 1 0 2 exosome 0.500231643921092 0 0.833168 0.000463287842184856 hm5C_site_4958 DeepMRMD:0.833168;iRNA_m5C:0.000463287842184856 4959 chr2 10564143 10564143 1 + C A rs186778465 10564143 + 10564123 10564163 41 GCAGGAGAATGGTGTGAACCCGGGAGGCAGAGCTTGCAGTG GCAGGAGAATGGTGTGAACCAGGGAGGCAGAGCTTGCAGTG Direct Loss 0.950819143544558 0 0.90707016 0 prediction 0.901638287089117 Functional Loss - HPCAL1 ENSG00000115756 UTR3 Human protein_coding chr2:10564143 chr2:10564143 . . 0 21 hm5C_associated_SNPs_49639 0 0 0 0 0 Ribosome 0.500231643919388 0 0.81414032 0.000463287838776916 hm5C_site_4959 DeepMRMD:0.81414032;iRNA_m5C:0.000463287838776916 4960 chr11 30344725 30344725 1 + C T rs4071559 30344725 + 30344705 30344745 41 ACTCGCATCTTGCCCGAAGCCGGGCGGAGGAGAGCTCAAGC ACTCGCATCTTGCCCGAAGCTGGGCGGAGGAGAGCTCAAGC Direct Loss 0.95081909280178 0 0.76104295 0 prediction 0.90163818560356 Functional Loss - ARL14EP ENSG00000152219 UTR5 Human protein_coding chr11:30344725 chr11:30344725 . . 0 21 hm5C_associated_SNPs_49640 0 0 1 0 1 chromatin 0.500231643905273 0 0.5220859 0.000463287810545054 hm5C_site_4960 DeepMRMD:0.5220859;iRNA_m5C:0.000463287810545054 4961 chr7 75508359 75508359 1 + C T rs186561790 75508359 + 75508339 75508379 41 AGGCGGAAGGAGCAGAGGACCGGCAGCCGGCGTCGAGGCGG AGGCGGAAGGAGCAGAGGACTGGCAGCCGGCGTCGAGGCGG Direct Loss 0.950812970362416 0 0.41730773 0 prediction 0.901625940724832 Functional Loss - RHBDD2 ENSG00000005486 UTR5 Human protein_coding chr7:75508359 chr7:75508359 . . 0 21 hm5C_associated_SNPs_49641 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4961 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4962 chr5 1222988 1222988 1 + C A rs57559350 1222988 + 1222968 1223008 41 CTGCACGTGCCCGGGGGAAGCGGAAGCTGCAGCTGGGGTGG CTGCACGTGCCCGGGGGAAGAGGAAGCTGCAGCTGGGGTGG Direct Loss 0.950812330402255 0 0.93565345 0 prediction 0.901624660804511 Functional Loss - SLC6A19 ENSG00000174358 UTR3 Human protein_coding chr5:1222988 chr5:1222988 . . 0 21 hm5C_associated_SNPs_49642 0 0 0 0 0 cytosol 0.50023164391933 0 0.8713069 0.000463287838659898 hm5C_site_4962 DeepMRMD:0.8713069;iRNA_m5C:0.000463287838659898 4963 chr16 31213960 31213960 1 + C A LUSC 31213960 + 31213940 31213980 41 CTTGAACTTCTTGAGCTCCTCGGCGGTCAGGTTCTCCAGCG CTTGAACTTCTTGAGCTCCTAGGCGGTCAGGTTCTCCAGCG Direct Loss 0.950804110529141 0 0.78648925 0 prediction 0.901608221058281 Functional Loss - PYCARD ENSG00000103490;ENSG00000261359 CDS Human other chr16:31213960 chr16:31213960 stopgain 0.058 0 21 hm5C_associated_SNPs_49643 0 0 1 0 0 Ribosome 0.500231643778078 0 0.5729785 0.000463287556155212 hm5C_site_4963 DeepMRMD:0.5729785;iRNA_m5C:0.000463287556155212 4964 chr16 3085468 3085468 1 + C T BLCA 3085468 + 3085448 3085488 41 CCCCCTGAGAGCGGCCCGGACGGGAAGCTGGGCCCATCTGG CCCCCTGAGAGCGGCCCGGATGGGAAGCTGGGCCCATCTGG Direct Loss 0.950798716546902 0 0.83461714 0 prediction 0.901597433093804 Functional Loss - BICDL2 ENSG00000162069 CDS Human protein_coding chr16:3085468 chr16:3085468 synonymous SNV . 0 21 hm5C_associated_SNPs_49644 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0 0.66923428 0.000463287842184856 hm5C_site_4964 DeepMRMD:0.66923428;iRNA_m5C:0.000463287842184856 4965 chr11 637451 637451 1 + C T rs192669730 637451 + 637431 637471 41 CTGCTCATCGGCGCGGTGCTCGCGGGGAACTCGCTCGTGTG CTGCTCATCGGCGCGGTGCTTGCGGGGAACTCGCTCGTGTG Direct Loss 0.950798475195897 0 0.9538235 0 prediction 0.901596950391794 Functional Loss - DRD4 ENSG00000069696 CDS Human protein_coding chr11:637451 chr11:637451 synonymous SNV . 0 21 hm5C_associated_SNPs_49645 0 0 1 0 0 exosome 0.500231647485176 0 0.907647 0.00046329497035269 hm5C_site_4965 DeepMRMD:0.907647;iRNA_m5C:0.00046329497035269 4966 chr3 127682121 127682121 1 + C T rs138448623 127682121 + 127682101 127682141 41 ACCCAGATGGGGACTTTTGGCGAGAGGGCCCTCCCATGCCA ACCCAGATGGGGACTTTTGGTGAGAGGGCCCTCCCATGCCA Direct Loss 0.950791635593159 0 0.8686254 0 prediction 0.901583271186317 Functional Loss - KBTBD12 ENSG00000187715 CDS Human protein_coding chr3:127682121 chr3:127682121 stopgain 0.992 1 21 hm5C_associated_SNPs_49646 0 0 0 0 1 exosome 0.500231643919738 0 0.7372508 0.000463287839475246 hm5C_site_4966 DeepMRMD:0.7372508;iRNA_m5C:0.000463287839475246 4967 chr17 57287809 57287809 1 + C T HNSC 57287809 + 57287789 57287829 41 ACCGAACTGAGGCAGGCTCCCAGGACTACAGCCTTCTGCAG ACCGAACTGAGGCAGGCTCCTAGGACTACAGCCTTCTGCAG Direct Loss 0.950773449595697 0 0.9043062 0 prediction 0.901546899191395 Functional Loss - SMG8 ENSG00000167447 CDS Human protein_coding chr17:57287809 chr17:57287809 stopgain 0.973 0 21 hm5C_associated_SNPs_49647 0 0 1 0 0 chromatin 0.500231643921092 0 0.8086124 0.000463287842184856 hm5C_site_4967 DeepMRMD:0.8086124;iRNA_m5C:0.000463287842184856 4968 chr12 122684846 122684846 1 + C T LUSC 122684846 + 122684826 122684866 41 ACTGAAGGCCTTCCTGCTGGCGGGGACCACCGTGACCATCG ACTGAAGGCCTTCCTGCTGGTGGGGACCACCGTGACCATCG Direct Loss 0.950759745276408 0 0.8985461 0 prediction 0.901519490552815 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122684846 chr12:122684846 nonsynonymous SNV 0.473 1 21 hm5C_associated_SNPs_49648 0 0 0 0 1 cytosol 0.500231643921092 0 0.7970922 0.000463287842184856 hm5C_site_4968 DeepMRMD:0.7970922;iRNA_m5C:0.000463287842184856 4969 chr15 59499328 59499328 1 + C A COAD 59499328 + 59499308 59499348 41 CTTATTGAGCGTTTCACTTCCGAGAAGCCCGTTCATCACAG CTTATTGAGCGTTTCACTTCAGAGAAGCCCGTTCATCACAG Direct Loss 0.9507292920145 0 0.31641775 0 prediction 0.901458584029 Functional Loss - LDHAL6B ENSG00000171989 CDS Human protein_coding chr15:59499328 chr15:59499328 synonymous SNV . 0 21 hm5C_associated_SNPs_49649 0 0 0 0 0 unknown 0.500231643907078 0 0 0.00046328781415661 hm5C_site_4969 DeepMRMD:0;iRNA_m5C:0.00046328781415661 4970 chr17 26370108 26370108 1 + C T UCEC 26370108 + 26370088 26370128 41 TGTACAGCAGCACACCTCTTCGGCAGCTGCGGCAGCCGCAG TGTACAGCAGCACACCTCTTTGGCAGCTGCGGCAGCCGCAG Direct Loss 0.950719344189809 0 0.890396 0 prediction 0.901438688379619 Functional Loss - NLK ENSG00000087095 CDS Human protein_coding chr17:26370108 chr17:26370108 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49650 0 0 1 0 0 Ribosome 0.500231661789996 0 0.780792 0.000463323579991792 hm5C_site_4970 DeepMRMD:0.780792;iRNA_m5C:0.000463323579991792 4971 chr22 21272283 21272283 1 + C T BLCA 21272283 + 21272263 21272303 41 GGTATATGGGGCCGGTGTCTCGCCAGGAGGCGCAGACCCGG GGTATATGGGGCCGGTGTCTTGCCAGGAGGCGCAGACCCGG Direct Loss 0.950710796166559 0 0.88951117 0 prediction 0.901421592333117 Functional Loss - CRKL ENSG00000099942 CDS Human protein_coding chr22:21272283 chr22:21272283 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_49651 0 0 1 0 0 Nucleus 0.500231643921092 0 0.77902234 0.000463287842184856 hm5C_site_4971 DeepMRMD:0.77902234;iRNA_m5C:0.000463287842184856 4972 chr7 64363631 64363631 1 + C T rs545109735 64363631 + 64363611 64363651 41 GGAGCGGACAGGACGGCTTCCGGGATTTGGCGGGGCCTTTG GGAGCGGACAGGACGGCTTCTGGGATTTGGCGGGGCCTTTG Direct Loss 0.950706438560926 0 0.9380188 0 prediction 0.901412877121853 Functional Loss - ZNF273 ENSG00000198039 UTR5 Human protein_coding chr7:64363631 chr7:64363631 . . 0 21 hm5C_associated_SNPs_49652 0 0 0 0 0 Cytosol 0.500231643921092 0 0.8760376 0.000463287842184856 hm5C_site_4972 DeepMRMD:0.8760376;iRNA_m5C:0.000463287842184856 4973 chr8 67405866 67405866 1 + C T rs2555584 67405866 + 67405846 67405886 41 CCTCCAGTTCCCAGGCACTTCGGGAAGAGGAGGCTGAAATG CCTCCAGTTCCCAGGCACTTTGGGAAGAGGAGGCTGAAATG Direct Loss 0.950695470085682 0 0.8781288 0 prediction 0.901390940171365 Functional Loss - C8orf46 ENSG00000169085 UTR5 Human protein_coding chr8:67405866 chr8:67405866 . . 0 21 hm5C_associated_SNPs_49653 0 0 0 0 0 exosome 0.500231643921092 0 0.7562576 0.000463287842184856 hm5C_site_4973 DeepMRMD:0.7562576;iRNA_m5C:0.000463287842184856 4974 chr19 15905288 15905288 1 + C G rs577671423 15905288 + 15905268 15905308 41 GCCTGCGGGGCTGCACCTGCCGGGTGGGCTGCTCCTGGGCT GCCTGCGGGGCTGCACCTGCGGGGTGGGCTGCTCCTGGGCT Direct Loss 0.950676071468915 0 0.90421015 0 prediction 0.901352142937831 Functional Loss - OR10H5 ENSG00000172519 CDS Human protein_coding chr19:15905288 chr19:15905288 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_49654 0 0 0 0 0 unknown 0.500231643921092 0 0.8084203 0.000463287842184856 hm5C_site_4974 DeepMRMD:0.8084203;iRNA_m5C:0.000463287842184856 4975 chr16 87730632 87730632 1 + C T rs562154806 87730632 + 87730612 87730652 41 GGTGTGGATGGAGGGCAGCCCGGGGCAGAGCCTCAGCCCCG GGTGTGGATGGAGGGCAGCCTGGGGCAGAGCCTCAGCCCCG Direct Loss 0.950675103041588 0 0.9317491 0 prediction 0.901350206083176 Functional Loss - JPH3 ENSG00000154118 UTR3 Human protein_coding chr16:87730632 chr16:87730632 . . 0 21 hm5C_associated_SNPs_49655 0 0 0 0 0 chromatin 0.500231646835025 0 0.8634982 0.000463293670049048 hm5C_site_4975 DeepMRMD:0.8634982;iRNA_m5C:0.000463293670049048 4976 chr19 17612097 17612097 1 + C A LUAD 17612097 + 17612077 17612117 41 TCCAGGAGTGGAGGGTAAGGCAGGGATGGCGGCCGTCGCAG TCCAGGAGTGGAGGGTAAGGAAGGGATGGCGGCCGTCGCAG Direct Loss 0.950672674024193 0 0.93192863 0 prediction 0.901345348048387 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17612097 chr19:17612097 nonsynonymous SNV 0.915 3 21 hm5C_associated_SNPs_49656 0 0 1 0 1 Endoplasmic reticulum 0.500231643924318 0 0.86385726 0.000463287848636584 hm5C_site_4976 DeepMRMD:0.86385726;iRNA_m5C:0.000463287848636584 4977 chr11 13032905 13032905 1 + C T rs114447292 13032905 + 13032885 13032925 41 GGAGGCAAGAACCCCCTATACTGGAAAACAAACAACCCAAG GGAGGCAAGAACCCCCTATATTGGAAAACAAACAACCCAAG Direct Loss 0.950658033821347 0 0.19451317 0 prediction 0.901316067642693 Functional Loss - RASSF10 ENSG00000189431 downstream Human protein_coding chr11:13032905 chr11:13032905 . . 0 21 hm5C_associated_SNPs_49657 0 0 0 0 0 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4977 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4978 chr3 196387246 196387246 1 + C G UCEC 196387246 + 196387226 196387266 41 CTGGAGTGGTTCCTCGCGACCGGGGGAGAGGCTGCCTTCGA CTGGAGTGGTTCCTCGCGACGGGGGGAGAGGCTGCCTTCGA Direct Loss 0.950648035355518 0 0.9523739 0 prediction 0.901296070711036 Functional Loss - NRROS ENSG00000174004 CDS Human protein_coding chr3:196387246 chr3:196387246 synonymous SNV . 0 21 hm5C_associated_SNPs_49658 0 0 0 0 0 chromatin 0.500231643921015 0 0.9047478 0.000463287842030757 hm5C_site_4978 DeepMRMD:0.9047478;iRNA_m5C:0.000463287842030757 4979 chr20 19955883 19955883 1 + C G BLCA 19955883 + 19955863 19955903 41 GGCCCCGCCTGAGGCCGCCCCGGGGGATTGCACAAGGGCCC GGCCCCGCCTGAGGCCGCCCGGGGGGATTGCACAAGGGCCC Direct Loss 0.950626186860656 0 0.9199604 0 prediction 0.901252373721311 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19955883 chr20:19955883 nonsynonymous SNV 0.640 0 21 hm5C_associated_SNPs_49659 0 0 0 0 0 Nucleus 0.500231643921092 0 0.8399208 0.000463287842184856 hm5C_site_4979 DeepMRMD:0.8399208;iRNA_m5C:0.000463287842184856 4980 chrX 123480537 123480537 1 + C T CESC 123480537 + 123480517 123480557 41 GGCAAAATCAGCAGGGAAACCGGCGAGAAGCTCCTGCTTGC GGCAAAATCAGCAGGGAAACTGGCGAGAAGCTCCTGCTTGC Direct Loss 0.950624410187316 0 0.89299375 0 prediction 0.901248820374633 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480537 chrX:123480537 synonymous SNV . 0 21 hm5C_associated_SNPs_49660 0 0 0 2 1 exosome 0.500231643965062 0 0.7859875 0.000463287930124068 hm5C_site_4980 DeepMRMD:0.7859875;iRNA_m5C:0.000463287930124068 4981 chr3 148601438 148601438 1 + C T UCEC 148601438 + 148601418 148601458 41 ACCCATGTGCAGATAACTATCGGGGCTCTGCACCAGAGTCC ACCCATGTGCAGATAACTATTGGGGCTCTGCACCAGAGTCC Direct Loss 0.95061988205916 0 0.959978 0 prediction 0.90123976411832 Functional Loss - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148601438 chr3:148601438 nonsynonymous SNV 0.006 2 21 hm5C_associated_SNPs_49661 0 0 0 0 1 Endoplasmic reticulum 0.500231643921105 0 0.919956 0.000463287842209281 hm5C_site_4981 DeepMRMD:0.919956;iRNA_m5C:0.000463287842209281 4982 chr16 31230697 31230697 1 + C A rs115885262 31230697 + 31230677 31230717 41 CACTGGAGGGCTCCTTGGACCGCGAGGCAGAGCGTGTACGG CACTGGAGGGCTCCTTGGACAGCGAGGCAGAGCGTGTACGG Direct Loss 0.950617724089367 0 0.45109516 0 prediction 0.901235448178735 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31230697 chr16:31230697 nonsynonymous SNV 0.340 0 21 hm5C_associated_SNPs_49662 0 0 1 0 1 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4982 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4983 chr6 131602737 131602737 1 + C T UCEC 131602737 + 131602717 131602757 41 AGTAAGAGGCTGGTGGAGAACGCGGTGCTCAAGGCTGTCCA AGTAAGAGGCTGGTGGAGAATGCGGTGCTCAAGGCTGTCCA Direct Loss 0.95061548891879 0 0.8984257 0 prediction 0.901230977837579 Functional Loss - AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131602737 chr6:131602737 synonymous SNV . 0 21 hm5C_associated_SNPs_49663 0 0 0 0 1 cytosol 0.500231622349187 0 0.7968514 0.00046324469837411 hm5C_site_4983 DeepMRMD:0.7968514;iRNA_m5C:0.00046324469837411 4984 chr3 128997702 128997702 1 + C A rs116769111 128997702 + 128997682 128997722 41 GTGGCCAAAGCGGAGCGGAGCGGGGGTGAGGAGAGTCGAGG GTGGCCAAAGCGGAGCGGAGAGGGGGTGAGGAGAGTCGAGG Direct Loss 0.950610480535679 0 0.9100498 0 prediction 0.901220961071358 Functional Loss - HMCES ENSG00000183624 UTR5 Human protein_coding chr3:128997702 chr3:128997702 . . 0 21 hm5C_associated_SNPs_49664 0 0 1 0 1 Ribosome 0.500231643921088 0 0.8200996 0.000463287842176419 hm5C_site_4984 DeepMRMD:0.8200996;iRNA_m5C:0.000463287842176419 4985 chr17 7214723 7214723 1 + C T HNSC 7214723 + 7214703 7214743 41 TCCAGGACAGCGGGGAGGTACGAGAGGACCTTCGTCTCCCT TCCAGGACAGCGGGGAGGTATGAGAGGACCTTCGTCTCCCT Direct Loss 0.950599362513809 0 0.9076462 0 prediction 0.901198725027617 Functional Loss - EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214723 chr17:7214723 stopgain 0.999 1 21 hm5C_associated_SNPs_49665 0 0 1 0 2 Ribosome 0.500231643921092 0 0.8152924 0.000463287842184856 hm5C_site_4985 DeepMRMD:0.8152924;iRNA_m5C:0.000463287842184856 4986 chr14 73572661 73572661 1 + C A LUSC 73572661 + 73572641 73572681 41 AACGGGAGCGAGAGAGAGAGCGAGAGAGGGAACGGGAGCGA AACGGGAGCGAGAGAGAGAGAGAGAGAGGGAACGGGAGCGA Direct Loss 0.950586405952123 0 0.82105386 0 prediction 0.901172811904246 Functional Loss - RBM25 ENSG00000119707 CDS Human protein_coding chr14:73572661 chr14:73572661 synonymous SNV . 0 21 hm5C_associated_SNPs_49666 0 0 1 0 1 Nucleus 0.500231643921092 0 0.64210772 0.000463287842184856 hm5C_site_4986 DeepMRMD:0.64210772;iRNA_m5C:0.000463287842184856 4987 chr22 39421279 39421279 1 + C T UCEC 39421279 + 39421259 39421299 41 CCGCCCGCCTCTACTACTACCGGGATAGAGATTGGCGGTGG CCGCCCGCCTCTACTACTACTGGGATAGAGATTGGCGGTGG Direct Loss 0.950581052140923 0 0.87795424 0 prediction 0.901162104281847 Functional Loss - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39421279 chr22:39421279 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49667 0 0 0 0 1 Nucleus 0.500231643656713 0 0.75590848 0.000463287313425154 hm5C_site_4987 DeepMRMD:0.75590848;iRNA_m5C:0.000463287313425154 4988 chr15 40565079 40565079 1 + C A rs201655600 40565079 + 40565059 40565099 41 GCCCCCAGGTGGTGATCATGCGGGACTACCAGCACTTCAAC GCCCCCAGGTGGTGATCATGAGGGACTACCAGCACTTCAAC Direct Loss 0.950580422225982 0 0.90437424 0 prediction 0.901160844451965 Functional Loss - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40565079 chr15:40565079 synonymous SNV . 0 21 hm5C_associated_SNPs_49668 0 0 0 0 1 unknown 0.500231643921092 0 0.80874848 0.000463287842184856 hm5C_site_4988 DeepMRMD:0.80874848;iRNA_m5C:0.000463287842184856 4989 chr12 53819644 53819644 1 + C T COAD 53819644 + 53819624 53819664 41 TCCGATTTATCACTGCCAGCCGGGGGGGTCCTGGCCGCCTG TCCGATTTATCACTGCCAGCTGGGGGGGTCCTGGCCGCCTG Direct Loss 0.950574513166302 0 0.946712 0 prediction 0.901149026332605 Functional Loss - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819644 chr12:53819644 nonsynonymous SNV 0.066 1 21 hm5C_associated_SNPs_49669 0 0 0 0 1 exosome 0.500231643921348 0 0.893424 0.000463287842695781 hm5C_site_4989 DeepMRMD:0.893424;iRNA_m5C:0.000463287842695781 4990 chr14 94568272 94568272 1 + C T READ 94568272 + 94568252 94568292 41 TCTACAGCAGCCATTGCCAACGGGGGCGGAGTTGCTGCTGG TCTACAGCAGCCATTGCCAATGGGGGCGGAGTTGCTGCTGG Direct Loss 0.950570014275043 0 0.9371587 0 prediction 0.901140028550086 Functional Loss - IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568272 chr14:94568272 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49670 0 0 1 0 1 Ribosome 0.500231643921092 0 0.8743174 0.000463287842184856 hm5C_site_4990 DeepMRMD:0.8743174;iRNA_m5C:0.000463287842184856 4991 chrX 99917344 99917344 1 + C T SKCM 99917344 + 99917324 99917364 41 CCTGCCAAGCCGTCGTTGGTCTGGAACTGCCTACTGCAGGC CCTGCCAAGCCGTCGTTGGTTTGGAACTGCCTACTGCAGGC Direct Loss 0.950565153636318 0 0.32167953 0 prediction 0.901130307272635 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99917344 chrX:99917344 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_49671 0 0 1 0 1 nucleus 0.500231454820539 0 0 0.000462909641077536 hm5C_site_4991 DeepMRMD:0;iRNA_m5C:0.000462909641077536 4992 chr20 826051 826051 1 + C G BLCA 826051 + 826031 826071 41 TTTCTAGGGCAGCCGCTGATCTCGAGCGCTTTTTTAACTTC TTTCTAGGGCAGCCGCTGATGTCGAGCGCTTTTTTAACTTC Direct Loss 0.950558012909562 0 0.30776265 0 prediction 0.901116025819124 Functional Loss - FAM110A ENSG00000125898 CDS Human protein_coding chr20:826051 chr20:826051 nonsynonymous SNV 0.889 1 21 hm5C_associated_SNPs_49672 0 0 0 0 0 Cytosol 0.500236958017954 0 0 0.000473916035907518 hm5C_site_4992 DeepMRMD:0;iRNA_m5C:0.000473916035907518 4993 chr11 33090282 33090282 1 + C G STAD 33090282 + 33090262 33090302 41 CCATCGGGGAGAAGGTGTGCCTGGAGGTGAGCAGCTGCCTC CCATCGGGGAGAAGGTGTGCGTGGAGGTGAGCAGCTGCCTC Direct Loss 0.950554807898008 0 0.43852496 0 prediction 0.901109615796016 Functional Loss - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33090282 chr11:33090282 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_49673 0 0 1 0 1 Ribosome 0.500231645389591 0 0 0.000463290779181058 hm5C_site_4993 DeepMRMD:0;iRNA_m5C:0.000463290779181058 4994 chr19 36120554 36120554 1 + C G HNSC 36120554 + 36120534 36120574 41 CCTGTGATCCGCCCAATTATCGCGACCAACACATACCAGCA CCTGTGATCCGCCCAATTATGGCGACCAACACATACCAGCA Direct Loss 0.950552234463621 0 0.8757111 0 prediction 0.901104468927243 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36120554 chr19:36120554 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_49674 0 0 1 0 1 Ribosome 0.500231643921092 0 0.7514222 0.000463287842184856 hm5C_site_4994 DeepMRMD:0.7514222;iRNA_m5C:0.000463287842184856 4995 chr15 44751319 44751319 1 + C G LUAD 44751319 + 44751299 44751339 41 GGTTGATGATAGCCTGCCTTCAGGAGGAGAAAAACCATCGA GGTTGATGATAGCCTGCCTTGAGGAGGAGAAAAACCATCGA Direct Loss 0.950548668225979 0 0.8774259 0 prediction 0.901097336451959 Functional Loss - CTDSPL2 ENSG00000137770 CDS Human protein_coding chr15:44751319 chr15:44751319 stopgain 1.000 0 21 hm5C_associated_SNPs_49675 0 0 1 0 1 Nucleus 0.500231643921092 0 0.7548518 0.000463287842184856 hm5C_site_4995 DeepMRMD:0.7548518;iRNA_m5C:0.000463287842184856 4996 chr6 167591961 167591961 1 + C T UCEC 167591961 + 167591941 167591981 41 CCTCCCGGGAGACGTCAAGACAGAAGTCCAGCACCCACTGG CCTCCCGGGAGACGTCAAGATAGAAGTCCAGCACCCACTGG Direct Loss 0.950536795509342 0 0.4518894 0 prediction 0.901073591018683 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167591961 chr6:167591961 synonymous SNV . 0 21 hm5C_associated_SNPs_49676 0 0 0 0 2 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_4996 DeepMRMD:0;iRNA_m5C:0.000463287842184856 4997 chr11 75480099 75480099 1 + C T SARC 75480099 + 75480079 75480119 41 GAGCGTCAGGCCGAGGCTGACCGGAGCCAGCGCTCTCACGG GAGCGTCAGGCCGAGGCTGATCGGAGCCAGCGCTCTCACGG Direct Loss 0.950508085100902 0 0.9180788 0 prediction 0.901016170201804 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75480099 chr11:75480099 synonymous SNV . 0 21 hm5C_associated_SNPs_49677 0 0 1 0 1 Ribosome 0.500231654808193 0 0.8361576 0.000463309616385299 hm5C_site_4997 DeepMRMD:0.8361576;iRNA_m5C:0.000463309616385299 4998 chr8 143763547 143763547 1 + C A rs1045531 143763547 + 143763527 143763567 41 CTCTGGGGACCCGGCCAGCTCTAGGCTCTGGGGGGCCCCGC CTCTGGGGACCCGGCCAGCTATAGGCTCTGGGGGGCCCCGC Direct Loss 0.950506597445657 0 0.89444196 0 prediction 0.901013194891315 Functional Loss - PSCA ENSG00000167653 CDS Human protein_coding chr8:143763547 chr8:143763547 synonymous SNV . 0 21 hm5C_associated_SNPs_49678 0 0 0 0 0 exosome 0.500231643921092 0 0.78888392 0.000463287842184856 hm5C_site_4998 DeepMRMD:0.78888392;iRNA_m5C:0.000463287842184856 4999 chr6 116600781 116600781 1 + G A PAAD 116600781 - 116600761 116600801 41 TCAGAGGAGGGGGGCGTACCCCAGGATGCCGCGGGCCGTGG TCAGAGGAGGGGGGCGTACCTCAGGATGCCGCGGGCCGTGG Direct Loss 0.950502610103358 0 0.8852904 0 prediction 0.901005220206716 Functional Loss - TSPYL1 ENSG00000189241 CDS Human protein_coding chr6:116600781 chr6:116600781 synonymous SNV . 0 21 hm5C_associated_SNPs_49679 0 0 1 0 0 Ribosome 0.500231643921095 0 0.7705808 0.000463287842190629 hm5C_site_4999 DeepMRMD:0.7705808;iRNA_m5C:0.000463287842190629 5000 chr5 76714121 76714121 1 + C T UCEC 76714121 + 76714101 76714141 41 AGTCCATGACGTGGATCACCCGGGAAGGACCAACTCTTTCC AGTCCATGACGTGGATCACCTGGGAAGGACCAACTCTTTCC Direct Loss 0.950500217676715 0 0.87701654 0 prediction 0.901000435353429 Functional Loss - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76714121 chr5:76714121 nonsynonymous SNV 0.922 4 21 hm5C_associated_SNPs_49680 0 0 1 0 1 Nucleus 0.500231643921092 0 0.75403308 0.000463287842184856 hm5C_site_5000 DeepMRMD:0.75403308;iRNA_m5C:0.000463287842184856 5001 chr5 140482020 140482020 1 + C T BLCA 140482020 + 140482000 140482040 41 GGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGT GGTGGCGGTGGACGGCGACTTGGGCCAGAACGCCTGGCTGT Direct Loss 0.950499990934515 0 0.9269775 0 prediction 0.90099998186903 Functional Loss - PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140482020 chr5:140482020 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_49681 0 0 0 0 0 exosome 0.500231643928099 0 0.853955 0.000463287856198979 hm5C_site_5001 DeepMRMD:0.853955;iRNA_m5C:0.000463287856198979 5002 chrX 128888527 128888527 1 + C T rs61733002 128888527 + 128888507 128888547 41 AGGCACAGTGGATGAGTTCTCGGGGGCAGAGATCGTGGACA AGGCACAGTGGATGAGTTCTTGGGGGCAGAGATCGTGGACA Direct Loss 0.950496721104453 0 0.9536911 0 prediction 0.900993442208907 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128888527 chrX:128888527 nonsynonymous SNV 0.390 2 21 hm5C_associated_SNPs_49682 0 0 0 0 1 exosome 0.50023164392093 0 0.9073822 0.000463287841860449 hm5C_site_5002 DeepMRMD:0.9073822;iRNA_m5C:0.000463287841860449 5003 chr3 137729133 137729133 1 + C T CESC 137729133 + 137729113 137729153 41 CTGGGGCTGGCCGGCTGCATCGCGGCCACCGGGATGGACAT CTGGGGCTGGCCGGCTGCATTGCGGCCACCGGGATGGACAT Direct Loss 0.950495033938517 0 0.91401565 0 prediction 0.900990067877035 Functional Loss - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137729133 chr3:137729133 synonymous SNV . 0 21 hm5C_associated_SNPs_49683 0 0 0 0 0 Endoplasmic reticulum 0.500231646112771 0 0.8280313 0.000463292225541867 hm5C_site_5003 DeepMRMD:0.8280313;iRNA_m5C:0.000463292225541867 5004 chr15 25457063 25457063 1 + C A CESC 25457063 + 25457043 25457083 41 GGAGGAGGATGCTGGGATCCCGAGATTTCCGGCAGGGCCAC GGAGGAGGATGCTGGGATCCAGAGATTTCCGGCAGGGCCAC Direct Loss 0.950494801949991 0 0.866472 0 prediction 0.900989603899982 Functional Loss - PWAR4 ENSG00000224078 ncRNA_intronic Human processed_transcript chr15:25457063 chr15:25457063 . . 0 21 hm5C_associated_SNPs_49684 0 0 0 0 0 unknown 0.500237071993834 0 0.732944 0.000474143987668096 hm5C_site_5004 DeepMRMD:0.732944;iRNA_m5C:0.000474143987668096 5005 chr1 249211618 249211618 1 + C T rs141953668 249211618 + 249211598 249211638 41 TGTGTGAGTACTTTGGGCACCGGGGGTCCAAGCAGCTGCAC TGTGTGAGTACTTTGGGCACTGGGGGTCCAAGCAGCTGCAC Direct Loss 0.950467646384411 0 0.9132219 0 prediction 0.900935292768822 Functional Loss - PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249211618 chr1:249211618 nonsynonymous SNV 0.875 3 21 hm5C_associated_SNPs_49685 0 0 1 0 0 Cytosol 0.500231643921092 0 0.8264438 0.000463287842184856 hm5C_site_5005 DeepMRMD:0.8264438;iRNA_m5C:0.000463287842184856 5006 chrX 37545270 37545270 1 + C G COAD 37545270 + 37545250 37545290 41 CCTGTTCGTGGCCGAGACAACGGCGGCGCTCAGCCTGAGCA CCTGTTCGTGGCCGAGACAAGGGCGGCGCTCAGCCTGAGCA Direct Loss 0.950461263918944 0 0.83861595 0 prediction 0.900922527837889 Functional Loss - XK ENSG00000047597 CDS Human protein_coding chrX:37545270 chrX:37545270 nonsynonymous SNV 0.945 1 21 hm5C_associated_SNPs_49686 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0 0.6772319 0.000463287842184856 hm5C_site_5006 DeepMRMD:0.6772319;iRNA_m5C:0.000463287842184856 5007 chr5 140530019 140530019 1 + C T HNSC 140530019 + 140529999 140530039 41 GGGTGGGGGAGCTGGCTTCGCGGGGCGCTCGGGTTGTTTTC GGGTGGGGGAGCTGGCTTCGTGGGGCGCTCGGGTTGTTTTC Direct Loss 0.950449387074271 0 0.9124813 0 prediction 0.900898774148542 Functional Loss - PCDHB6 ENSG00000113211 CDS Human protein_coding chr5:140530019 chr5:140530019 nonsynonymous SNV 0.007 3 21 hm5C_associated_SNPs_49687 0 0 0 0 0 exosome 0.500231643921093 0 0.8249626 0.0004632878421853 hm5C_site_5007 DeepMRMD:0.8249626;iRNA_m5C:0.0004632878421853 5008 chr19 46029421 46029421 1 + C T UCEC 46029421 + 46029401 46029441 41 TCGTCCAGGAGCTGAGGAAGCGGGGTTCTCCCTGACCACAG TCGTCCAGGAGCTGAGGAAGTGGGGTTCTCCCTGACCACAG Direct Loss 0.95044533344468 0 0.9531014 0 prediction 0.90089066688936 Functional Loss - VASP ENSG00000125753 CDS Human protein_coding chr19:46029421 chr19:46029421 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49688 0 0 1 0 1 Ribosome 0.500231643921092 0 0.9062028 0.000463287842184856 hm5C_site_5008 DeepMRMD:0.9062028;iRNA_m5C:0.000463287842184856 5009 chr19 8436164 8436164 1 + C T rs1044250 8436164 + 8436144 8436184 41 GGAGAAGGTGCATAGCATCACGGGGGACCGCAACAGCCGCC GGAGAAGGTGCATAGCATCATGGGGGACCGCAACAGCCGCC Direct Loss 0.950443561101092 0 0.922273 0 prediction 0.900887122202183 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8436164 chr19:8436164 nonsynonymous SNV 0.022 0 21 hm5C_associated_SNPs_49689 0 0 1 0 1 Cytosol 0.500231643921092 0 0.844546 0.000463287842184856 hm5C_site_5009 DeepMRMD:0.844546;iRNA_m5C:0.000463287842184856 5010 chr7 89874756 89874756 1 + C G LUAD 89874756 + 89874736 89874776 41 GCCATGTGGACAGAGGAAGCCGGGGCGACCGCCGAGGCCCA GCCATGTGGACAGAGGAAGCGGGGGCGACCGCCGAGGCCCA Direct Loss 0.950438582360621 0 0.8889625 0 prediction 0.900877164721242 Functional Loss - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89874756 chr7:89874756 synonymous SNV . 0 21 hm5C_associated_SNPs_49690 0 0 0 0 0 cytosol 0.50023164392111 0 0.777925 0.000463287842220383 hm5C_site_5010 DeepMRMD:0.777925;iRNA_m5C:0.000463287842220383 5011 chr19 50357680 50357680 1 + C T UCEC 50357680 + 50357660 50357700 41 CAGGAAGGTGCTCGGGTCTTCGGGGCACTGGGTCCCATCGG CAGGAAGGTGCTCGGGTCTTTGGGGCACTGGGTCCCATCGG Direct Loss 0.950435514329158 0 0.96452713 0 prediction 0.900871028658317 Functional Loss - PTOV1 ENSG00000104960 CDS Human protein_coding chr19:50357680 chr19:50357680 synonymous SNV . 0 21 hm5C_associated_SNPs_49691 0 0 1 0 1 Ribosome 0.500231643921092 0 0.92905426 0.000463287842184856 hm5C_site_5011 DeepMRMD:0.92905426;iRNA_m5C:0.000463287842184856 5012 chr9 100745613 100745613 1 + C T rs116897480 100745613 + 100745593 100745633 41 GTAGTGAGCCCAGCGCTGCGCTCCAGCCCCCTTTTCCCTCC GTAGTGAGCCCAGCGCTGCGTTCCAGCCCCCTTTTCCCTCC Direct Loss 0.950429397705803 0 0.6551487 0 prediction 0.900858795411606 Functional Loss - ANP32B ENSG00000136938 upstream Human protein_coding chr9:100745613 chr9:100745613 . . 0 21 hm5C_associated_SNPs_49692 0 0 1 0 0 Cytosol 0.500231643921091 0 0.3102974 0.000463287842181082 hm5C_site_5012 DeepMRMD:0.3102974;iRNA_m5C:0.000463287842181082 5013 chr1 24669202 24669202 1 + C T BRCA 24669202 + 24669182 24669222 41 AGGGAGCTGAGAGGAAGATGCGCGATGACGAGCGGAAGCAG AGGGAGCTGAGAGGAAGATGTGCGATGACGAGCGGAAGCAG Direct Loss 0.950414439500506 0 0.31788003 0 prediction 0.900828879001011 Functional Loss - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24669202 chr1:24669202 nonsynonymous SNV 0.988 4 21 hm5C_associated_SNPs_49693 0 0 0 0 2 Nucleus 0.500231643921086 0 0 0.000463287842172644 hm5C_site_5013 DeepMRMD:0;iRNA_m5C:0.000463287842172644 5014 chr9 131580998 131580998 1 + C T rs2293969 131580998 + 131580978 131581018 41 GGCCGGCCTGACCCTGGCGTCGGGCGCGGGGCTGGGTGCGG GGCCGGCCTGACCCTGGCGTTGGGCGCGGGGCTGGGTGCGG Direct Loss 0.950407874061708 0 0.90398264 0 prediction 0.900815748123415 Functional Loss - ENDOG ENSG00000167136 CDS Human protein_coding chr9:131580998 chr9:131580998 nonsynonymous SNV 0.872 0 21 hm5C_associated_SNPs_49694 0 0 1 0 0 Cytosol 0.50023164389037 0 0.80796528 0.000463287780740229 hm5C_site_5014 DeepMRMD:0.80796528;iRNA_m5C:0.000463287780740229 5015 chr19 21242305 21242305 1 + C G rs373043220 21242305 + 21242285 21242325 41 AGTGCAGTGAACTGAAATTGCGCCATTGCACTCCAGCCTGG AGTGCAGTGAACTGAAATTGGGCCATTGCACTCCAGCCTGG Direct Loss 0.950406570038216 0 0.13749692 0 prediction 0.900813140076431 Functional Loss - ZNF430 ENSG00000118620 UTR3 Human protein_coding chr19:21242305 chr19:21242305 . . 0 21 hm5C_associated_SNPs_49695 0 0 0 0 0 Nucleus 0.500255581453178 0 0 0.000511162906355445 hm5C_site_5015 DeepMRMD:0;iRNA_m5C:0.000511162906355445 5016 chrY 9195478 9195478 1 + C T SKCM 9195478 + 9195458 9195498 41 CCTGAGGGCTCGCTGACCTACTGGGTGCCAGAGAGGCTGCG CCTGAGGGCTCGCTGACCTATTGGGTGCCAGAGAGGCTGCG Direct Loss 0.950406462604999 0 0.19520283 0 prediction 0.900812925209997 Functional Loss - TSPY4;TSPY8 ENSG00000229549 CDS Human protein_coding chrY:9195478 chrY:9195478 synonymous SNV . 0 21 hm5C_associated_SNPs_49696 0 0 0 0 0 unknown 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5016 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5017 chr2 231902428 231902428 1 + C A rs138198063 231902428 + 231902408 231902448 41 AACAGAGCCGCGCGCTGCTGCGGGACTTCGCACGGGCGGTG AACAGAGCCGCGCGCTGCTGAGGGACTTCGCACGGGCGGTG Direct Loss 0.950405384629341 0 0.8951502 0 prediction 0.900810769258681 Functional Loss - C2orf72 ENSG00000204128 CDS Human protein_coding chr2:231902428 chr2:231902428 synonymous SNV . 0 21 hm5C_associated_SNPs_49697 0 0 1 0 0 Ribosome 0.500231652362046 0 0.7903004 0.00046330472409184 hm5C_site_5017 DeepMRMD:0.7903004;iRNA_m5C:0.00046330472409184 5018 chr9 107331796 107331796 1 + C A LUAD 107331796 + 107331776 107331816 41 ACGGAGTGCATGATCTTAGGCACGATGGCACTGGACCGCTA ACGGAGTGCATGATCTTAGGAACGATGGCACTGGACCGCTA Direct Loss 0.950403845563517 0 0.30154926 0 prediction 0.900807691127034 Functional Loss - OR13C8 ENSG00000186943 CDS Human protein_coding chr9:107331796 chr9:107331796 synonymous SNV . 0 21 hm5C_associated_SNPs_49698 0 0 0 0 0 unknown 0.500231601128145 0 0 0.000463202256290929 hm5C_site_5018 DeepMRMD:0;iRNA_m5C:0.000463202256290929 5019 chr3 122545733 122545733 1 + C G CESC 122545733 + 122545713 122545753 41 TCTCTCTACGACGTGGTTTTCTGCAGATGAAAGGGCCACAG TCTCTCTACGACGTGGTTTTGTGCAGATGAAAGGGCCACAG Direct Loss 0.950403271402209 0 0.22167113 0 prediction 0.900806542804419 Functional Loss - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122545733 chr3:122545733 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49699 0 0 0 1 1 Endoplasmic reticulum 0.500231643921878 0 0 0.000463287843756266 hm5C_site_5019 DeepMRMD:0;iRNA_m5C:0.000463287843756266 5020 chr16 14397837 14397837 1 + C T PRAD 14397837 + 14397817 14397857 41 GGAGGCTGTGGTCTCAGAATCGGGGTTTTGAGGGCGAGATG GGAGGCTGTGGTCTCAGAATTGGGGTTTTGAGGGCGAGATG Direct Loss 0.950400536342186 0 0.94905585 0 prediction 0.900801072684373 Functional Loss - MIR193B ENSG00000207639 ncRNA_exonic Human miRNA chr16:14397837 chr16:14397837 . . 0 21 hm5C_associated_SNPs_49700 0 0 1 0 0 unknown 0.500231640618966 0 0.8981117 0.0004632812379326 hm5C_site_5020 DeepMRMD:0.8981117;iRNA_m5C:0.0004632812379326 5021 chr11 109294666 109294666 1 + C T COAD 109294666 + 109294646 109294686 41 GGGCTCAGGAGGAATATGAGCGGGATCACTGCAGCGGCAGC GGGCTCAGGAGGAATATGAGTGGGATCACTGCAGCGGCAGC Direct Loss 0.950395555299704 0 0.89781475 0 prediction 0.900791110599408 Functional Loss - C11orf87 ENSG00000185742 CDS Human protein_coding chr11:109294666 chr11:109294666 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49701 0 0 0 0 0 exosome 0.500231644624595 0 0.7956295 0.000463289249189813 hm5C_site_5021 DeepMRMD:0.7956295;iRNA_m5C:0.000463289249189813 5022 chr11 5626756 5626756 1 + C T BLCA 5626756 + 5626736 5626776 41 TGCGAGAGCTCATCTCGGATCTGGAGCGTCGATGTCAGGGG TGCGAGAGCTCATCTCGGATTTGGAGCGTCGATGTCAGGGG Direct Loss 0.95037878576859 0 0.2365706 0 prediction 0.900757571537181 Functional Loss - TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5626756 chr11:5626756 synonymous SNV . 0 21 hm5C_associated_SNPs_49702 0 0 0 0 1 unknown 0.50023189682908 0 0 0.000463793658160183 hm5C_site_5022 DeepMRMD:0;iRNA_m5C:0.000463793658160183 5023 chr6 73978859 73978859 1 + C A rs113622559 73978859 + 73978839 73978879 41 GTGCTAAGCCCCTCATTGCCCGGGGCCAGCAGGGCCGGCCG GTGCTAAGCCCCTCATTGCCAGGGGCCAGCAGGGCCGGCCG Direct Loss 0.950375514830287 0 0.9350769 0 prediction 0.900751029660575 Functional Loss - KHDC1 ENSG00000229852 ncRNA_exonic Human antisense chr6:73978859 chr6:73978859 . . 0 21 hm5C_associated_SNPs_49703 0 0 0 0 0 Cytosol 0.500231643921094 0 0.8701538 0.000463287842187743 hm5C_site_5023 DeepMRMD:0.8701538;iRNA_m5C:0.000463287842187743 5024 chrX 88008565 88008565 1 + C A HNSC 88008565 + 88008545 88008585 41 GTAGAAACCAACCCAATAAACAGGGAGCCAGGCACAGCAAC GTAGAAACCAACCCAATAAAAAGGGAGCCAGGCACAGCAAC Direct Loss 0.950360401444432 0 0.93473744 0 prediction 0.900720802888865 Functional Loss - CPXCR1 ENSG00000147183 CDS Human protein_coding chrX:88008565 chrX:88008565 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49704 0 0 0 0 0 unknown 0.500231643921298 0 0.86947488 0.000463287842596083 hm5C_site_5024 DeepMRMD:0.86947488;iRNA_m5C:0.000463287842596083 5025 chr1 77334339 77334339 1 + C T LUAD 77334339 + 77334319 77334359 41 GGCCACCGGCAGCTCGCAGCCGGCGGCGGAGAGCAGCACCC GGCCACCGGCAGCTCGCAGCTGGCGGCGGAGAGCAGCACCC Direct Loss 0.950353368343093 0 0.89306426 0 prediction 0.900706736686187 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77334339 chr1:77334339 nonsynonymous SNV 0.059 1 21 hm5C_associated_SNPs_49705 0 0 0 0 1 exosome 0.500231643921092 0 0.78612852 0.000463287842184856 hm5C_site_5025 DeepMRMD:0.78612852;iRNA_m5C:0.000463287842184856 Stroke 5026 chr19 35758631 35758631 1 + C G BLCA 35758631 + 35758611 35758651 41 GCGTCCCGAGAGCGCAGGCTCAAGAAGGTGAGGGCCGCCCT GCGTCCCGAGAGCGCAGGCTGAAGAAGGTGAGGGCCGCCCT Direct Loss 0.950353130204209 0 0.8440366 0 prediction 0.900706260408418 Functional Loss - LSR ENSG00000105699 CDS Human protein_coding chr19:35758631 chr19:35758631 synonymous SNV . 0 21 hm5C_associated_SNPs_49706 0 0 1 0 1 chromatin 0.500231644205763 0 0.6880732 0.000463288411526319 hm5C_site_5026 DeepMRMD:0.6880732;iRNA_m5C:0.000463288411526319 5027 chr11 63885079 63885079 1 + C T GBM 63885079 + 63885059 63885099 41 CATCCACGTGAAGGCCCTGACGGCAGACTCCATCCGCATCA CATCCACGTGAAGGCCCTGATGGCAGACTCCATCCGCATCA Direct Loss 0.950352445818333 0 0.90405035 0 prediction 0.900704891636666 Functional Loss - FLRT1 ENSG00000126500 CDS Human protein_coding chr11:63885079 chr11:63885079 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_49707 0 0 0 0 0 chromatin 0.500231643917112 0 0.8081007 0.000463287834223447 hm5C_site_5027 DeepMRMD:0.8081007;iRNA_m5C:0.000463287834223447 5028 chr12 112580035 112580035 1 + C T rs146374447 112580035 + 112580015 112580055 41 AGTGTGGCAGAGCAGGACTTCTGGAGGGCCGTATGTGAGGC AGTGTGGCAGAGCAGGACTTTTGGAGGGCCGTATGTGAGGC Direct Loss 0.950347656684473 0 0.5724004 0 prediction 0.900695313368946 Functional Loss - TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112580035 chr12:112580035 synonymous SNV . 0 21 hm5C_associated_SNPs_49708 0 0 1 0 0 Cytosol 0.500231644100346 0 0.1448008 0.000463288200692302 hm5C_site_5028 DeepMRMD:0.1448008;iRNA_m5C:0.000463288200692302 5029 chr5 132149781 132149781 1 + C T rs376732803 132149781 + 132149761 132149801 41 TCCGAGCCCGCTCAGCCGCCCGGGGAGCGGTCCGCCGACCC TCCGAGCCCGCTCAGCCGCCTGGGGAGCGGTCCGCCGACCC Direct Loss 0.950343711817338 0 0.92819846 0 prediction 0.900687423634675 Functional Loss - SOWAHA ENSG00000198944 CDS Human protein_coding chr5:132149781 chr5:132149781 synonymous SNV . 0 21 hm5C_associated_SNPs_49709 0 0 0 0 0 exosome 0.500231558995902 0 0.85639692 0.000463117991803319 hm5C_site_5029 DeepMRMD:0.85639692;iRNA_m5C:0.000463117991803319 5030 chr7 193399 193399 1 + C A rs538469200 193399 + 193379 193419 41 GGCCCAGGTTCGGGGCCGCCCCGGGGAGCCCCCGGCCGCCT GGCCCAGGTTCGGGGCCGCCACGGGGAGCCCCCGGCCGCCT Direct Loss 0.950342979644361 0 0.9417852 0 prediction 0.900685959288722 Functional Loss - FAM20C ENSG00000177706 CDS Human protein_coding chr7:193399 chr7:193399 nonsynonymous SNV 0.109 2 21 hm5C_associated_SNPs_49710 1 0 0 0 0 Ribosome 0.500231643921093 0 0.8835704 0.000463287842185078 hm5C_site_5030 DeepMRMD:0.8835704;iRNA_m5C:0.000463287842185078 not specified not specified 5031 chr5 40681884 40681884 1 + C T BLCA 40681884 + 40681864 40681904 41 CGCCGGAGCTTCCGCCGCATCGCGGGCGCCGAGATCCAGAT CGCCGGAGCTTCCGCCGCATTGCGGGCGCCGAGATCCAGAT Direct Loss 0.950341578003269 0 0.9037733 0 prediction 0.900683156006538 Functional Loss - PTGER4 ENSG00000171522 CDS Human protein_coding chr5:40681884 chr5:40681884 synonymous SNV . 0 21 hm5C_associated_SNPs_49711 0 0 0 0 1 Cytosol 0.500231643921089 0 0.8075466 0.000463287842177307 hm5C_site_5031 DeepMRMD:0.8075466;iRNA_m5C:0.000463287842177307 5032 chr3 147128137 147128137 1 + C A DLBC 147128137 + 147128117 147128157 41 CTGCTGCGGCCCTGGGCCATCACCATCACCCGGGCCACGTC CTGCTGCGGCCCTGGGCCATAACCATCACCCGGGCCACGTC Direct Loss 0.950312869768855 0 0.28394789 0 prediction 0.90062573953771 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147128137 chr3:147128137 nonsynonymous SNV 0.991 5 21 hm5C_associated_SNPs_49712 0 0 0 0 0 exosome 0.500231645073515 0 0 0.00046329014703006 hm5C_site_5032 DeepMRMD:0;iRNA_m5C:0.00046329014703006 5033 chr6 27833137 27833137 1 + C A rs201871635 27833137 + 27833117 27833157 41 TTATCGTTTCTTCGTCATGTCGGGACGCGGCAAGCAGGGAG TTATCGTTTCTTCGTCATGTAGGGACGCGGCAAGCAGGGAG Direct Loss 0.950302382881616 0 0.8609066 0 prediction 0.900604765763231 Functional Loss - HIST1H2AL ENSG00000198374 CDS Human other chr6:27833137 chr6:27833137 stopgain 0.025 0 21 hm5C_associated_SNPs_49713 0 0 1 0 0 exosome 0.500231643924491 0 0.7218132 0.00046328784898142 hm5C_site_5033 DeepMRMD:0.7218132;iRNA_m5C:0.00046328784898142 5034 chr6 167709603 167709603 1 + C T rs34631973 167709603 + 167709583 167709623 41 GTGCACATACCTCACGATCACGGGAAACACACATGCAGAGA GTGCACATACCTCACGATCATGGGAAACACACATGCAGAGA Direct Loss 0.950301299446155 0 0.88291824 0 prediction 0.900602598892311 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167709603 chr6:167709603 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_49714 0 0 0 0 1 cytosol 0.500319557473203 0 0.76583648 0.000639114946405783 hm5C_site_5034 DeepMRMD:0.76583648;iRNA_m5C:0.000639114946405783 5035 chr6 74073460 74073460 1 + C A rs61746688 74073460 + 74073440 74073480 41 CCGGTGGAGGTGCAGGAGGCCGGGACCCAGCAGTCTCTCCA CCGGTGGAGGTGCAGGAGGCAGGGACCCAGCAGTCTCTCCA Direct Loss 0.950296672678317 0 0.93594587 0 prediction 0.900593345356635 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74073460 chr6:74073460 synonymous SNV . 0 21 hm5C_associated_SNPs_49715 0 0 0 0 0 unknown 0.500228282151697 0 0.87189174 0.000456564303393137 hm5C_site_5035 DeepMRMD:0.87189174;iRNA_m5C:0.000456564303393137 5036 chr16 28884870 28884870 1 + C T CESC 28884870 + 28884850 28884890 41 GTCGAGGGCGCCAGAAGTGGCGGCAGCAGCAGCCGCAGCAG GTCGAGGGCGCCAGAAGTGGTGGCAGCAGCAGCCGCAGCAG Direct Loss 0.950289870873101 0 0.893003 0 prediction 0.900579741746201 Functional Loss - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28884870 chr16:28884870 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_49716 0 0 1 0 0 Cytosol 0.500231643981668 0 0.786006 0.000463287963335723 hm5C_site_5036 DeepMRMD:0.786006;iRNA_m5C:0.000463287963335723 5037 chr10 88719858 88719858 1 + C T CESC 88719858 + 88719838 88719878 41 GTGGAGGAGGCGGAGAACATCGCGGTCACCTCCGGGGTGGT GTGGAGGAGGCGGAGAACATTGCGGTCACCTCCGGGGTGGT Direct Loss 0.950287662013875 0 0.89732814 0 prediction 0.90057532402775 Functional Loss - SNCG ENSG00000173267 CDS Human protein_coding chr10:88719858 chr10:88719858 nonsynonymous SNV 0.730 2 21 hm5C_associated_SNPs_49717 0 0 1 0 1 Cytosol 0.500231643844763 0 0.79465628 0.00046328768952697 hm5C_site_5037 DeepMRMD:0.79465628;iRNA_m5C:0.00046328768952697 5038 chr17 1650447 1650447 1 + C A UCEC 1650447 + 1650427 1650467 41 GACTGGCTGCCAGGATGTACCTGCAGAAAGGTAGGCGCTGA GACTGGCTGCCAGGATGTACATGCAGAAAGGTAGGCGCTGA Direct Loss 0.950286923265312 0 0.43205547 0 prediction 0.900573846530624 Functional Loss - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1650447 chr17:1650447 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_49718 0 0 0 0 1 Endoplasmic reticulum 0.500231643921048 0 0 0.000463287842096705 hm5C_site_5038 DeepMRMD:0;iRNA_m5C:0.000463287842096705 5039 chr11 66610994 66610994 1 + C G LUSC 66610994 + 66610974 66611014 41 GCCGGAGCGGCCGCCCGAGTCGGCGGCGCTGGGCGGCCTGG GCCGGAGCGGCCGCCCGAGTGGGCGGCGCTGGGCGGCCTGG Direct Loss 0.950283185916795 0 0.9215016 0 prediction 0.900566371833589 Functional Loss - RCE1 ENSG00000173653 CDS Human protein_coding chr11:66610994 chr11:66610994 nonsynonymous SNV 0.499 2 21 hm5C_associated_SNPs_49719 0 0 1 0 0 Ribosome 0.500231640660581 0 0.8430032 0.000463281321162023 hm5C_site_5039 DeepMRMD:0.8430032;iRNA_m5C:0.000463281321162023 5040 chr2 241500227 241500227 1 + C G rs571769896 241500227 + 241500207 241500247 41 GCGGAGGAGCAGCTGGCGCGCGCGGGAGTCACGCTGTGCGT GCGGAGGAGCAGCTGGCGCGGGCGGGAGTCACGCTGTGCGT Direct Loss 0.950278747406796 0 0.8874477 0 prediction 0.900557494813591 Functional Loss - ANKMY1;DUSP28 ENSG00000144504;ENSG00000188542 CDS Human other chr2:241500227 chr2:241500227 synonymous SNV . 0 21 hm5C_associated_SNPs_49720 0 0 0 0 0 unknown 0.500232803123714 0 0.7748954 0.000465606247427086 hm5C_site_5040 DeepMRMD:0.7748954;iRNA_m5C:0.000465606247427086 5041 chr17 61619769 61619769 1 + C T PRAD 61619769 + 61619749 61619789 41 CGGAGAGCTTCTGGAGTAAGCTGGAGGTCACCTTCAACCTG CGGAGAGCTTCTGGAGTAAGTTGGAGGTCACCTTCAACCTG Direct Loss 0.950270578695781 0 0.85948217 0 prediction 0.900541157391561 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61619769 chr17:61619769 synonymous SNV . 0 21 hm5C_associated_SNPs_49721 0 0 0 0 1 unknown 0.500231643922641 0 0.71896434 0.000463287845282601 hm5C_site_5041 DeepMRMD:0.71896434;iRNA_m5C:0.000463287845282601 5042 chr22 29837967 29837967 1 + C T BLCA 29837967 + 29837947 29837987 41 GGTTCCCATGTCTATACATTCAGGAGTGTCTCTGCTGAGGA GGTTCCCATGTCTATACATTTAGGAGTGTCTCTGCTGAGGA Direct Loss 0.95026672152835 0 0.88862777 0 prediction 0.900533443056699 Functional Loss - RFPL1 ENSG00000128250 CDS Human protein_coding chr22:29837967 chr22:29837967 synonymous SNV . 0 21 hm5C_associated_SNPs_49722 0 0 0 0 0 exosome 0.500231647243375 0 0.77725554 0.000463294486749311 hm5C_site_5042 DeepMRMD:0.77725554;iRNA_m5C:0.000463294486749311 5043 chr18 74962981 74962981 1 + C G LUSC 74962981 + 74962961 74963001 41 CTGCTGGGCGTGGGCTGCATCTGGGCGCTGTCCATTGCCAT CTGCTGGGCGTGGGCTGCATGTGGGCGCTGTCCATTGCCAT Direct Loss 0.950265676884046 0 0.9207156 0 prediction 0.900531353768091 Functional Loss - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74962981 chr18:74962981 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_49723 0 0 0 0 0 exosome 0.500231640528919 0 0.8414312 0.000463281057838216 hm5C_site_5043 DeepMRMD:0.8414312;iRNA_m5C:0.000463281057838216 5044 chr21 46021934 46021934 1 + C T rs398680 46021934 + 46021914 46021954 41 TAGCCCGGTGTGGGGAGAAACGAGGGTAGACACGTACCAAC TAGCCCGGTGTGGGGAGAAATGAGGGTAGACACGTACCAAC Direct Loss 0.950265359134234 0 0.93252414 0 prediction 0.900530718268469 Functional Loss - KRTAP10-7 ENSG00000205441 UTR3 Human other chr21:46021934 chr21:46021934 . . 0 21 hm5C_associated_SNPs_49724 0 0 0 2 0 unknown 0.500231643921092 0 0.86504828 0.000463287842184856 hm5C_site_5044 DeepMRMD:0.86504828;iRNA_m5C:0.000463287842184856 5045 chr17 54671875 54671875 1 + C A BLCA 54671875 + 54671855 54671895 41 GGCGGGGGTGCAGCTGGGGGCGCGGAGGACCTGGCGGAGCT GGCGGGGGTGCAGCTGGGGGAGCGGAGGACCTGGCGGAGCT Direct Loss 0.950256395243916 0 0.88071114 0 prediction 0.900512790487832 Functional Loss - NOG ENSG00000183691 CDS Human protein_coding chr17:54671875 chr17:54671875 synonymous SNV . 0 21 hm5C_associated_SNPs_49725 0 0 1 0 0 exosome 0.500231643921092 0 0.76142228 0.000463287842184856 hm5C_site_5045 DeepMRMD:0.76142228;iRNA_m5C:0.000463287842184856 5046 chr1 2939273 2939273 1 + C A HNSC 2939273 + 2939253 2939293 41 CCCGACCGGTGGTTCTCCACCTGGATTGGAGCCTCCATCGT CCCGACCGGTGGTTCTCCACATGGATTGGAGCCTCCATCGT Direct Loss 0.950247768512266 0 0.09966004 0 prediction 0.900495537024531 Functional Loss - ACTRT2 ENSG00000169717 CDS Human protein_coding chr1:2939273 chr1:2939273 synonymous SNV . 0 21 hm5C_associated_SNPs_49726 0 0 0 0 0 unknown 0.500231643930449 0 0 0.000463287860898776 hm5C_site_5046 DeepMRMD:0;iRNA_m5C:0.000463287860898776 5047 chr3 51982479 51982479 1 + C T COAD 51982479 + 51982459 51982499 41 AGTGTCGCCTGCGCTACCTGCTGGAGGTCCACCTCTGAGTG AGTGTCGCCTGCGCTACCTGTTGGAGGTCCACCTCTGAGTG Direct Loss 0.950235845621477 0 0.89101183 0 prediction 0.900471691242954 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51982479 chr3:51982479 synonymous SNV . 0 21 hm5C_associated_SNPs_49727 0 0 0 0 0 nucleus 0.50023164392132 0 0.78202366 0.000463287842639826 hm5C_site_5047 DeepMRMD:0.78202366;iRNA_m5C:0.000463287842639826 5048 chr2 206950423 206950423 1 + C G rs566703635 206950423 + 206950403 206950443 41 GTCGCCGCCCGCGGGCGCCCCGGAGGCCCTCAGGCCCCCGG GTCGCCGCCCGCGGGCGCCCGGGAGGCCCTCAGGCCCCCGG Direct Loss 0.950226439877089 0 0.9290092 0 prediction 0.900452879754177 Functional Loss - INO80D ENSG00000227946 ncRNA_exonic Human lincRNA chr2:206950423 chr2:206950423 . . 0 21 hm5C_associated_SNPs_49728 0 0 1 0 0 chromatin 0.500231643921082 0 0.8580184 0.00046328784216354 hm5C_site_5048 DeepMRMD:0.8580184;iRNA_m5C:0.00046328784216354 5049 chr10 1046670 1046670 1 + C T BLCA 1046670 + 1046650 1046690 41 CTGGAGGATAGGAACACCATCGAGATGCAGGCCATCACTGC CTGGAGGATAGGAACACCATTGAGATGCAGGCCATCACTGC Direct Loss 0.950224706568835 0 0.7582443 0 prediction 0.90044941313767 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1046670 chr10:1046670 synonymous SNV . 0 21 hm5C_associated_SNPs_49729 0 0 1 1 1 Cytosol 0.500231643921092 0 0.5164886 0.000463287842184634 hm5C_site_5049 DeepMRMD:0.5164886;iRNA_m5C:0.000463287842184634 5050 chr1 152770592 152770592 1 + C A LUAD 152770592 + 152770572 152770612 41 GCTGCGGTGGGGGCAGCAGCCAGCACTCTGGAGGCTGCTGC GCTGCGGTGGGGGCAGCAGCAAGCACTCTGGAGGCTGCTGC Direct Loss 0.950212489395469 0 0.7663325 0 prediction 0.900424978790938 Functional Loss - LCE1D ENSG00000172155 CDS Human protein_coding chr1:152770592 chr1:152770592 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_49730 0 0 0 0 0 unknown 0.500231643570447 0 0.532665 0.000463287140894941 hm5C_site_5050 DeepMRMD:0.532665;iRNA_m5C:0.000463287140894941 5051 chr15 20496644 20496644 1 + C T PAAD 20496644 + 20496624 20496664 41 GAAGGGGAAGCCGAGGGTGCCGAGACCACAAAGCGCCCGGC GAAGGGGAAGCCGAGGGTGCTGAGACCACAAAGCGCCCGGC Direct Loss 0.950196646000069 0 0.8341701 0 prediction 0.900393292000139 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20496644 chr15:20496644 . . 0 21 hm5C_associated_SNPs_49731 0 0 0 0 1 unknown 0.500231643921294 0 0.6683402 0.000463287842588755 hm5C_site_5051 DeepMRMD:0.6683402;iRNA_m5C:0.000463287842588755 5052 chr6 114181089 114181089 1 + C G rs547521790 114181089 + 114181069 114181109 41 AAGGAGGCCCCCGCGGAAGGCGAGGCTGCCGAGCCCGGCTC AAGGAGGCCCCCGCGGAAGGGGAGGCTGCCGAGCCCGGCTC Direct Loss 0.950188679930452 0 0.9104751 0 prediction 0.900377359860903 Functional Loss - MARCKS ENSG00000155130 CDS Human other chr6:114181089 chr6:114181089 synonymous SNV . 0 21 hm5C_associated_SNPs_49732 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8209502 0.000463287842184856 hm5C_site_5052 DeepMRMD:0.8209502;iRNA_m5C:0.000463287842184856 5053 chr6 123319253 123319253 1 + C G CESC 123319253 + 123319233 123319273 41 TCCCTGGGGGCCTGGCCAATCTGGACCACTATGGCAGGAAG TCCCTGGGGGCCTGGCCAATGTGGACCACTATGGCAGGAAG Direct Loss 0.950183284071818 0 0.38277894 0 prediction 0.900366568143637 Functional Loss - CLVS2 ENSG00000146352 CDS Human protein_coding chr6:123319253 chr6:123319253 nonsynonymous SNV 0.989 1 21 hm5C_associated_SNPs_49733 0 0 0 0 1 exosome 0.500231643921099 0 0 0.000463287842198845 hm5C_site_5053 DeepMRMD:0;iRNA_m5C:0.000463287842198845 5054 chr10 115805333 115805333 1 + C A rs55637433 115805333 + 115805313 115805353 41 ATCCAAGGTGTAGGGCCCGGCGCGGGGCGCGGACTCCGGGC ATCCAAGGTGTAGGGCCCGGAGCGGGGCGCGGACTCCGGGC Direct Loss 0.95018093784312 0 0.9255679 0 prediction 0.900361875686241 Functional Loss - ADRB1 ENSG00000043591 UTR3 Human protein_coding chr10:115805333 chr10:115805333 . . 0 21 hm5C_associated_SNPs_49734 0 0 0 0 0 Nucleus 0.500231643921092 0 0.8511358 0.000463287842184856 hm5C_site_5054 DeepMRMD:0.8511358;iRNA_m5C:0.000463287842184856 5055 chr4 140375451 140375451 1 + C T BLCA 140375451 + 140375431 140375471 41 CCTGCCCGCTCCCGCATCTTCAAGATAATCGTGATCGGCGA CCTGCCCGCTCCCGCATCTTTAAGATAATCGTGATCGGCGA Direct Loss 0.950167268640356 0 0.145489 0 prediction 0.900334537280712 Functional Loss - RAB33B ENSG00000172007 CDS Human protein_coding chr4:140375451 chr4:140375451 synonymous SNV . 0 21 hm5C_associated_SNPs_49735 0 0 1 0 0 Nucleus 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5055 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5056 chr15 65153755 65153755 1 + C T SARC 65153755 + 65153735 65153775 41 CCAGCGACGCCGGCCACCAACGAGAGTCCACCTGAAGGAGG CCAGCGACGCCGGCCACCAATGAGAGTCCACCTGAAGGAGG Direct Loss 0.950166956443287 0 0.89666104 0 prediction 0.900333912886574 Functional Loss - PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65153755 chr15:65153755 nonsynonymous SNV 0.454 4 21 hm5C_associated_SNPs_49736 0 0 0 0 2 chromatin 0.500231643921092 0 0.79332208 0.000463287842184856 hm5C_site_5056 DeepMRMD:0.79332208;iRNA_m5C:0.000463287842184856 5057 chr16 30199403 30199403 1 + C T UCEC 30199403 + 30199383 30199423 41 GAGGTGAACAAGTGTGAGATCGCCAGGTGACTGACCCCCGG GAGGTGAACAAGTGTGAGATTGCCAGGTGACTGACCCCCGG Direct Loss 0.950161742858057 0 0.9409602 0 prediction 0.900323485716114 Functional Loss - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199403 chr16:30199403 synonymous SNV . 0 21 hm5C_associated_SNPs_49737 0 0 0 0 1 Cytosol 0.500231643808086 0 0.8819204 0.000463287616171204 hm5C_site_5057 DeepMRMD:0.8819204;iRNA_m5C:0.000463287616171204 5058 chr8 146230423 146230423 1 + C T rs151236779 146230423 + 146230403 146230443 41 TTACGGAAGTATGAGGGAGTCGCGAGGCCGGAGATAAGCTT TTACGGAAGTATGAGGGAGTTGCGAGGCCGGAGATAAGCTT Direct Loss 0.950161116467535 0 0.90335727 0 prediction 0.90032223293507 Functional Loss - ZNF252P-AS1 ENSG00000255559 ncRNA_exonic Human antisense chr8:146230423 chr8:146230423 . . 0 21 hm5C_associated_SNPs_49738 0 0 1 0 0 unknown 0.500231069730235 0 0.80671454 0.000462139460470024 hm5C_site_5058 DeepMRMD:0.80671454;iRNA_m5C:0.000462139460470024 5059 chr11 63678382 63678382 1 + C T rs538278494 63678382 + 63678362 63678402 41 TCCCAAAGGGGGTAGGGGCCCGGGGCACCCAGGCAAGGTGG TCCCAAAGGGGGTAGGGGCCTGGGGCACCCAGGCAAGGTGG Direct Loss 0.950156724853257 0 0.9137553 0 prediction 0.900313449706515 Functional Loss - MARK2 ENSG00000072518 UTR3 Human protein_coding chr11:63678382 chr11:63678382 . . 0 21 hm5C_associated_SNPs_49739 0 0 1 0 0 Nucleus 0.500231643921092 0 0.8275106 0.000463287842184856 hm5C_site_5059 DeepMRMD:0.8275106;iRNA_m5C:0.000463287842184856 5060 chr9 34251714 34251714 1 + C T rs79550209 34251714 + 34251694 34251734 41 CTGGGGAGGTGGGGAAGATTCGGGCATGTGAGTGCCCCCAG CTGGGGAGGTGGGGAAGATTTGGGCATGTGAGTGCCCCCAG Direct Loss 0.950136122669088 0 0.9068338 0 prediction 0.900272245338176 Functional Loss - UBAP1 ENSG00000165006 UTR3 Human protein_coding chr9:34251714 chr9:34251714 . . 0 21 hm5C_associated_SNPs_49740 0 0 1 0 0 Ribosome 0.500231643921093 0 0.8136676 0.000463287842185078 hm5C_site_5060 DeepMRMD:0.8136676;iRNA_m5C:0.000463287842185078 Educational attainment (MTAG) 5061 chr16 2522609 2522609 1 + C T COAD 2522609 + 2522589 2522629 41 CATGGCAGCGGGCCACTGCCCGGGAATCCCACGCCTGCCTC CATGGCAGCGGGCCACTGCCTGGGAATCCCACGCCTGCCTC Direct Loss 0.950130399518422 0 0.9076062 0 prediction 0.900260799036843 Functional Loss - NTN3 ENSG00000162068 CDS Human protein_coding chr16:2522609 chr16:2522609 nonsynonymous SNV 0.924 3 21 hm5C_associated_SNPs_49741 0 0 0 0 1 exosome 0.500291165156909 0 0.8152124 0.000582330313818602 hm5C_site_5061 DeepMRMD:0.8152124;iRNA_m5C:0.000582330313818602 5062 chr7 45216936 45216936 1 + C T rs145890722 45216936 + 45216916 45216956 41 CCCAGAGCAGGCGGCTGCAACGAGACAGGCATGTTGGAGAG CCCAGAGCAGGCGGCTGCAATGAGACAGGCATGTTGGAGAG Direct Loss 0.950129259047941 0 0.6767709 0 prediction 0.900258518095882 Functional Loss - RAMP3 ENSG00000122679 CDS Human protein_coding chr7:45216936 chr7:45216936 synonymous SNV . 0 21 hm5C_associated_SNPs_49742 0 0 0 0 1 exosome 0.500231643906852 0 0.3535418 0.000463287813704305 hm5C_site_5062 DeepMRMD:0.3535418;iRNA_m5C:0.000463287813704305 5063 chr8 21904138 21904138 1 + C T UCEC 21904138 + 21904118 21904158 41 AACAAGAGGGGCAAGCTCATCGGGAAGGTGAGGCTGGGAGA AACAAGAGGGGCAAGCTCATTGGGAAGGTGAGGCTGGGAGA Direct Loss 0.950120831288582 0 0.9124335 0 prediction 0.900241662577164 Functional Loss - FGF17 ENSG00000158815 CDS Human protein_coding chr8:21904138 chr8:21904138 synonymous SNV . 0 21 hm5C_associated_SNPs_49743 0 0 0 0 1 chromatin 0.500234077424331 0 0.824867 0.00046815484866114 hm5C_site_5063 DeepMRMD:0.824867;iRNA_m5C:0.00046815484866114 5064 chr6 111279824 111279824 1 + C G rs3798364 111279824 + 111279804 111279844 41 CGCCCGCCGGAAGCCGACATCTCGAGTTCTGGCAGAAGCAA CGCCCGCCGGAAGCCGACATGTCGAGTTCTGGCAGAAGCAA Direct Loss 0.950114868021121 0 0.857925 0 prediction 0.900229736042242 Functional Loss - GTF3C6 ENSG00000155115 UTR5 Human protein_coding chr6:111279824 chr6:111279824 . . 0 21 hm5C_associated_SNPs_49744 0 0 0 0 0 Ribosome 0.50023164392805 0 0.71585 0.000463287856099504 hm5C_site_5064 DeepMRMD:0.71585;iRNA_m5C:0.000463287856099504 5065 chr12 132855171 132855171 1 + C A rs370968551 132855171 + 132855151 132855191 41 GGAGGCTGAGTGGCCCTCCCCGGGGCTGGGGCCCGCCGTCT GGAGGCTGAGTGGCCCTCCCAGGGGCTGGGGCCCGCCGTCT Direct Loss 0.950101154374323 0 0.93933916 0 prediction 0.900202308748646 Functional Loss - LOC100130238 ENSG00000256542 ncRNA_exonic Human antisense chr12:132855171 chr12:132855171 . . 0 21 hm5C_associated_SNPs_49745 0 0 0 0 0 unknown 0.500231643921092 0 0.87867832 0.000463287842184856 hm5C_site_5065 DeepMRMD:0.87867832;iRNA_m5C:0.000463287842184856 5066 chr11 118272366 118272366 1 + C T CESC 118272366 + 118272346 118272386 41 GCGGTTCGGGGCGACGGACTCTCCATTCCAGAACCATGGCC GCGGTTCGGGGCGACGGACTTTCCATTCCAGAACCATGGCC Direct Loss 0.950074039994337 0 0.9565594 0 prediction 0.900148079988675 Functional Loss - LOC100131626 ENSG00000254873 CDS Human antisense chr11:118272366 chr11:118272366 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49746 0 0 1 0 1 unknown 0.500231643921092 0 0.9131188 0.000463287842184856 hm5C_site_5066 DeepMRMD:0.9131188;iRNA_m5C:0.000463287842184856 5067 chr2 91969034 91969034 1 + C G rs187809531 91969034 + 91969014 91969054 41 GCCCCAGTGAGGTGTTCTGCCGGGATAGAAAGGTGCTTTGG GCCCCAGTGAGGTGTTCTGCGGGGATAGAAAGGTGCTTTGG Direct Loss 0.950072247751503 0 0.913359 0 prediction 0.900144495503006 Functional Loss - GGT8P ENSG00000236969 ncRNA_exonic Human unprocessed_pseudogene chr2:91969034 chr2:91969034 . . 0 21 hm5C_associated_SNPs_49747 0 0 0 0 0 unknown 0.500231643921092 0 0.826718 0.000463287842184856 hm5C_site_5067 DeepMRMD:0.826718;iRNA_m5C:0.000463287842184856 5068 chr10 43597981 43597981 1 + C T READ 43597981 + 43597961 43598001 41 CAAGGCCCTCCTTCCGCATTCGGGAGAACCGACCCCCAGGC CAAGGCCCTCCTTCCGCATTTGGGAGAACCGACCCCCAGGC Direct Loss 0.95006146948919 0 0.9503663 0 prediction 0.900122938978381 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43597981 chr10:43597981 nonsynonymous SNV 0.632 3 21 hm5C_associated_SNPs_49748 1 0 0 0 0 Cytosol 0.500231643923193 0 0.9007326 0.000463287846385496 hm5C_site_5068 DeepMRMD:0.9007326;iRNA_m5C:0.000463287846385496 Multiple endocrine neoplasia, type 2 Multiple endocrine neoplasia, type 2 5069 chr1 35223223 35223223 1 + C T UCEC 35223223 + 35223203 35223243 41 TGGTCATGCACGTGGCCTACCGGGAGGTTCAGGAGAAGAGG TGGTCATGCACGTGGCCTACTGGGAGGTTCAGGAGAAGAGG Direct Loss 0.950056172149193 0 0.92726195 0 prediction 0.900112344298386 Functional Loss - GJB5 ENSG00000189280 CDS Human protein_coding chr1:35223223 chr1:35223223 nonsynonymous SNV 0.861 5 21 hm5C_associated_SNPs_49749 0 0 0 0 0 Ribosome 0.500231644413457 0 0.8545239 0.000463288826914043 hm5C_site_5069 DeepMRMD:0.8545239;iRNA_m5C:0.000463288826914043 5070 chr20 34203837 34203837 1 + C T rs531947092 34203837 + 34203817 34203857 41 CGCAGGGTCCGTGGGGTCCCCGCGGCGCGCAGCGGCTGAAG CGCAGGGTCCGTGGGGTCCCTGCGGCGCGCAGCGGCTGAAG Direct Loss 0.950014830276149 0 0.5220767 0 prediction 0.900029660552298 Functional Loss - SPAG4 ENSG00000061656 UTR5 Human protein_coding chr20:34203837 chr20:34203837 . . 0 21 hm5C_associated_SNPs_49750 0 0 0 0 0 chromatin 0.500231643921093 0 0.0441533999999999 0.000463287842185522 hm5C_site_5070 DeepMRMD:0.0441533999999999;iRNA_m5C:0.000463287842185522 5071 chr5 172410873 172410873 1 + C G BRCA 172410873 + 172410853 172410893 41 AGGCGGCGACCATGGCGTATCACGGCCTCACTGTGCCTCTC AGGCGGCGACCATGGCGTATGACGGCCTCACTGTGCCTCTC Direct Loss 0.949993317151188 0 0.8222252 0 prediction 0.899986634302375 Functional Loss - ATP6V0E1 ENSG00000113732 CDS Human protein_coding chr5:172410873 chr5:172410873 nonsynonymous SNV 0.965 0 21 hm5C_associated_SNPs_49751 0 0 1 0 1 Ribosome 0.500231643641191 0 0.6444504 0.000463287282382874 hm5C_site_5071 DeepMRMD:0.6444504;iRNA_m5C:0.000463287282382874 5072 chr1 9670738 9670738 1 + C A rs114072438 9670738 + 9670718 9670758 41 GCTGCTGTTCCCGTCACCCCCTGGAGAGGCCCCCACCACGC GCTGCTGTTCCCGTCACCCCATGGAGAGGCCCCCACCACGC Direct Loss 0.949983748687035 0 0.92673725 0 prediction 0.899967497374069 Functional Loss - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9670738 chr1:9670738 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_49752 0 0 1 0 0 Ribosome 0.500231658222271 0 0.8534745 0.000463316444542672 hm5C_site_5072 DeepMRMD:0.8534745;iRNA_m5C:0.000463316444542672 5073 chr9 137777212 137777212 1 + C T BLCA 137777212 + 137777192 137777232 41 ACGGACGGAGGGGGCTGGACCGTGAGTGTGGGGCTGGGCAG ACGGACGGAGGGGGCTGGACTGTGAGTGTGGGGCTGGGCAG Direct Loss 0.949973862035393 0 0.38503146 0 prediction 0.899947724070786 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777212 chr9:137777212 synonymous SNV . 0 21 hm5C_associated_SNPs_49753 0 0 0 0 1 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5073 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5074 chr3 51982335 51982335 1 + C T rs78218556 51982335 + 51982315 51982355 41 TGTGCCCTGCAGATCCGACCCAGGACACTGAGTTGGAGCTG TGTGCCCTGCAGATCCGACCTAGGACACTGAGTTGGAGCTG Direct Loss 0.949957285720709 0 0.89087784 0 prediction 0.899914571441419 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51982335 chr3:51982335 stopgain 0.873 0 21 hm5C_associated_SNPs_49754 0 0 0 0 1 nucleus 0.500231560610317 0 0.78175568 0.000463121220634521 hm5C_site_5074 DeepMRMD:0.78175568;iRNA_m5C:0.000463121220634521 5075 chr10 127530826 127530826 1 + C A rs148228542 127530826 + 127530806 127530846 41 TCCAGGGAGACTAAGGTGGCCGGAACTCGCGGTCACAGTAC TCCAGGGAGACTAAGGTGGCAGGAACTCGCGGTCACAGTAC Direct Loss 0.949955817494924 0 0.6766867 0 prediction 0.899911634989849 Functional Loss - BCCIP ENSG00000107949 UTR3 Human protein_coding chr10:127530826 chr10:127530826 . . 0 21 hm5C_associated_SNPs_49755 0 0 1 0 0 Ribosome 0.500261629884992 0 0.3533734 0.000523259769984907 hm5C_site_5075 DeepMRMD:0.3533734;iRNA_m5C:0.000523259769984907 5076 chr6 26452478 26452478 1 + C G OV 26452478 + 26452458 26452498 41 ACCTAGTGCCTGATCATTCCCTGGAGACACCACTGACCCCG ACCTAGTGCCTGATCATTCCGTGGAGACACCACTGACCCCG Direct Loss 0.94992257830766 0 0.74616927 0 prediction 0.89984515661532 Functional Loss - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26452478 chr6:26452478 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_49756 0 0 0 0 0 Endoplasmic reticulum 0.500231645296212 0 0.49233854 0.000463290592423116 hm5C_site_5076 DeepMRMD:0.49233854;iRNA_m5C:0.000463290592423116 5077 chr19 9361856 9361856 1 + C T UCEC 9361856 + 9361836 9361876 41 AGAACTGCAGCCGGTCCTCGCTGGGCTGTTCCTGTCCATGT AGAACTGCAGCCGGTCCTCGTTGGGCTGTTCCTGTCCATGT Direct Loss 0.949913880161778 0 0.90375894 0 prediction 0.899827760323555 Functional Loss - OR7E24 ENSG00000237521 CDS Human protein_coding chr19:9361856 chr19:9361856 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_49757 0 0 0 0 0 unknown 0.500231454293184 0 0.80751788 0.000462908586368549 hm5C_site_5077 DeepMRMD:0.80751788;iRNA_m5C:0.000462908586368549 5078 chrX 30237647 30237647 1 + C T LGG 30237647 + 30237627 30237667 41 TTTGAAAGATGAAGAGAAAGCCGGAGTCTGAGCCAGAGTTG TTTGAAAGATGAAGAGAAAGTCGGAGTCTGAGCCAGAGTTG Direct Loss 0.949910141451381 0 0.88212895 0 prediction 0.899820282902762 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30237647 chrX:30237647 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_49758 0 0 1 0 0 exosome 0.500231642999235 0 0.7642579 0.00046328599847012 hm5C_site_5078 DeepMRMD:0.7642579;iRNA_m5C:0.00046328599847012 5079 chr14 75469786 75469786 1 + C T BLCA 75469786 + 75469766 75469806 41 GGTGGTGGGCCGCGCAGCTCCGAGGAAATGGCTCGGGAGAC GGTGGTGGGCCGCGCAGCTCTGAGGAAATGGCTCGGGAGAC Direct Loss 0.949907846861164 0 0.86844885 0 prediction 0.899815693722329 Functional Loss - EIF2B2 ENSG00000119718 CDS Human protein_coding chr14:75469786 chr14:75469786 synonymous SNV . 0 21 hm5C_associated_SNPs_49759 0 0 0 0 1 Ribosome 0.500231643921093 0 0.7368977 0.000463287842185078 hm5C_site_5079 DeepMRMD:0.7368977;iRNA_m5C:0.000463287842185078 5080 chr1 158152778 158152778 1 + C T HNSC 158152778 + 158152758 158152798 41 CTGTATGGGTGAAGTGGATGCGGGGTGAGCAGGAGCAGCAG CTGTATGGGTGAAGTGGATGTGGGGTGAGCAGGAGCAGCAG Direct Loss 0.949900958995143 0 0.9275665 0 prediction 0.899801917990287 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152778 chr1:158152778 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_49760 0 0 0 0 0 Endoplasmic reticulum 0.500231643918037 0 0.855133 0.000463287836073079 hm5C_site_5080 DeepMRMD:0.855133;iRNA_m5C:0.000463287836073079 5081 chr15 23260862 23260862 1 + C T UCEC 23260862 + 23260842 23260882 41 GGAAGTTAGAGCAGTCCATGCGGGAGGAGGCACTACTGAAA GGAAGTTAGAGCAGTCCATGTGGGAGGAGGCACTACTGAAA Direct Loss 0.949873239968058 0 0.8896972 0 prediction 0.899746479936116 Functional Loss - GOLGA8IP ENSG00000153666 CDS Human other chr15:23260862 chr15:23260862 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49761 0 0 0 0 2 unknown 0.500231643921092 0 0.7793944 0.000463287842184856 hm5C_site_5081 DeepMRMD:0.7793944;iRNA_m5C:0.000463287842184856 5082 chr19 55177294 55177294 1 + C T SKCM 55177294 + 55177274 55177314 41 AGGCACTGGGAGGTACTGATCGGGGTCTTGGTGGTCTCCAT AGGCACTGGGAGGTACTGATTGGGGTCTTGGTGGTCTCCAT Direct Loss 0.94984472092405 0 0.9678597 0 prediction 0.8996894418481 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177294 chr19:55177294 synonymous SNV . 0 21 hm5C_associated_SNPs_49762 0 0 0 0 2 exosome 0.500231643756691 0 0.9357194 0.000463287513381871 hm5C_site_5082 DeepMRMD:0.9357194;iRNA_m5C:0.000463287513381871 5083 chr17 28512552 28512552 1 + C G OV 28512552 + 28512532 28512572 41 GGCAAGAGAAGGGTAAAGAACAAGAGAGACCACCTGAGGCA GGCAAGAGAAGGGTAAAGAAGAAGAGAGACCACCTGAGGCA Direct Loss 0.949840749660161 0 0.88880354 0 prediction 0.899681499320321 Functional Loss - NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28512552 chr17:28512552 nonsynonymous SNV 0.106 1 21 hm5C_associated_SNPs_49763 0 0 0 0 0 Cytosol 0.500231643913375 0 0.77760708 0.000463287826749648 hm5C_site_5083 DeepMRMD:0.77760708;iRNA_m5C:0.000463287826749648 5084 chr19 49439416 49439416 1 + C T UCEC 49439416 + 49439396 49439436 41 GCGGAAGTTCGCGAGATGGTCGCGGAGGCCCGATCCCGAGC GCGGAAGTTCGCGAGATGGTTGCGGAGGCCCGATCCCGAGC Direct Loss 0.949838433944794 0 0.901459 0 prediction 0.899676867889588 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49439416 chr19:49439416 synonymous SNV . 0 21 hm5C_associated_SNPs_49764 0 0 0 0 1 cytosol 0.500227353504222 0 0.802918 0.000454707008444855 hm5C_site_5084 DeepMRMD:0.802918;iRNA_m5C:0.000454707008444855 5085 chr17 18345569 18345569 1 + C T rs531898090 18345569 + 18345549 18345589 41 GTGAGATGGAGCAGCAGAGCCGGGAGTACCAGATCTTGCTG GTGAGATGGAGCAGCAGAGCTGGGAGTACCAGATCTTGCTG Direct Loss 0.949832293297595 0 0.9164357 0 prediction 0.899664586595191 Functional Loss - KRT16P1 ENSG00000214856 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18345569 chr17:18345569 . . 0 21 hm5C_associated_SNPs_49765 0 0 0 0 1 unknown 0.50023214915019 0 0.8328714 0.000464298300379973 hm5C_site_5085 DeepMRMD:0.8328714;iRNA_m5C:0.000464298300379973 5086 chr14 65008507 65008507 1 + C T UCEC 65008507 + 65008487 65008527 41 AGCTCAATGCCGACCTCTTTCGCGGGACCCTGGAGCCGGTG AGCTCAATGCCGACCTCTTTTGCGGGACCCTGGAGCCGGTG Direct Loss 0.94981388321357 0 0.9234295 0 prediction 0.89962776642714 Functional Loss - HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65008507 chr14:65008507 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_49766 0 0 0 0 0 Cytosol 0.500231643921026 0 0.846859 0.00046328784205274 hm5C_site_5086 DeepMRMD:0.846859;iRNA_m5C:0.00046328784205274 5087 chr1 99730142 99730142 1 + C T UCEC 99730142 + 99730122 99730162 41 AGGACGCAGACCCGGGCAGGCGGCAGGGATGTCGGCGAAGG AGGACGCAGACCCGGGCAGGTGGCAGGGATGTCGGCGAAGG Direct Loss 0.949813674899601 0 0.6686874 0 prediction 0.899627349799202 Functional Loss - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99730142 chr1:99730142 nonsynonymous SNV 0.976 0 21 hm5C_associated_SNPs_49767 0 0 0 0 1 exosome 0.500233744247193 0 0.3373748 0.000467488494385826 hm5C_site_5087 DeepMRMD:0.3373748;iRNA_m5C:0.000467488494385826 5088 chr19 50905323 50905323 1 + C T COAD 50905323 + 50905303 50905343 41 GCCATCAGCCGGGACAGTCGCGGGGGGAGGGAGCTGACTGG GCCATCAGCCGGGACAGTCGTGGGGGGAGGGAGCTGACTGG Direct Loss 0.949808772014576 0 0.9447633 0 prediction 0.899617544029152 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905323 chr19:50905323 synonymous SNV . 0 21 hm5C_associated_SNPs_49768 1 0 1 0 1 Nucleus 0.500231644163316 0 0.8895266 0.000463288326631117 hm5C_site_5088 DeepMRMD:0.8895266;iRNA_m5C:0.000463288326631117 Colorectal cancer 10 Colorectal cancer 10 5089 chr16 75256679 75256679 1 + C T STAD 75256679 + 75256659 75256699 41 CCCCCAGGCTGCGGGGTCCCCGCCATCCACCCTGTGCTCAG CCCCCAGGCTGCGGGGTCCCTGCCATCCACCCTGTGCTCAG Direct Loss 0.949806484472754 0 0.09059769 0 prediction 0.899612968945507 Functional Loss - CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256679 chr16:75256679 synonymous SNV . 0 21 hm5C_associated_SNPs_49769 0 0 0 0 2 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5089 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5090 chr22 38471196 38471196 1 + C T rs182411306 38471196 + 38471176 38471216 41 GGGAGGACGGAGCCTGGGAGCGGGGCGGGGCCGCCGCGCAA GGGAGGACGGAGCCTGGGAGTGGGGCGGGGCCGCCGCGCAA Direct Loss 0.949804503033737 0 0.91000134 0 prediction 0.899609006067473 Functional Loss - PICK1 ENSG00000100151 UTR3 Human protein_coding chr22:38471196 chr22:38471196 . . 0 21 hm5C_associated_SNPs_49770 0 0 1 0 0 Ribosome 0.500231643919559 0 0.82000268 0.000463287839117088 hm5C_site_5090 DeepMRMD:0.82000268;iRNA_m5C:0.000463287839117088 5091 chr12 113875765 113875765 1 + C A rs146573098 113875765 + 113875745 113875785 41 ACTCAGGCCTCCTGCGGAGGCTCCAGGCCGAGGGCTGCCTG ACTCAGGCCTCCTGCGGAGGATCCAGGCCGAGGGCTGCCTG Direct Loss 0.949803276783287 0 0.9261711 0 prediction 0.899606553566574 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113875765 chr12:113875765 nonsynonymous SNV 0.655 5 21 hm5C_associated_SNPs_49771 0 0 0 0 1 Nucleus 0.500235509581752 0 0.8523422 0.000471019163503783 hm5C_site_5091 DeepMRMD:0.8523422;iRNA_m5C:0.000471019163503783 5092 chr16 2577803 2577803 1 + C T STAD 2577803 + 2577783 2577823 41 TGGAGGGCCCCTTCATCAGCCGGGAGAAGCGGGGCGCGCAC TGGAGGGCCCCTTCATCAGCTGGGAGAAGCGGGGCGCGCAC Direct Loss 0.949802876535509 0 0.9261349 0 prediction 0.899605753071018 Functional Loss - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577803 chr16:2577803 nonsynonymous SNV 0.973 3 21 hm5C_associated_SNPs_49772 0 0 1 0 1 Ribosome 0.500727530389835 0 0.8522698 0.00145506077966928 hm5C_site_5092 DeepMRMD:0.8522698;iRNA_m5C:0.00145506077966928 5093 chr19 45281354 45281354 1 + C T SKCM 45281354 + 45281334 45281374 41 CCCGCACAGCGCAGCTGCTTCGAGAGGTGGCCCATTCTCGG CCCGCACAGCGCAGCTGCTTTGAGAGGTGGCCCATTCTCGG Direct Loss 0.949792229374263 0 0.93311507 0 prediction 0.899584458748526 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45281354 chr19:45281354 stopgain 0.901 0 21 hm5C_associated_SNPs_49773 0 0 0 0 0 Ribosome 0.500231643956414 0 0.86623014 0.000463287912827015 hm5C_site_5093 DeepMRMD:0.86623014;iRNA_m5C:0.000463287912827015 5094 chr6 26045867 26045867 1 + C A SKCM 26045867 + 26045847 26045887 41 GCCTGGTGCGAGAAATCGCCCAGGACTTCAAAACCGACCTG GCCTGGTGCGAGAAATCGCCAAGGACTTCAAAACCGACCTG Direct Loss 0.949788624304766 0 0.84349275 0 prediction 0.899577248609532 Functional Loss - HIST1H3C ENSG00000196532 CDS Human other chr6:26045867 chr6:26045867 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_49774 0 0 1 0 0 exosome 0.500231643921092 0 0.6869855 0.000463287842184856 hm5C_site_5094 DeepMRMD:0.6869855;iRNA_m5C:0.000463287842184856 5095 chr7 92087399 92087399 1 + C T rs182671831 92087399 + 92087379 92087419 41 AGGTGGAGATTGCAGTAAGCCGAGATCGTGCCACTGCACTC AGGTGGAGATTGCAGTAAGCTGAGATCGTGCCACTGCACTC Direct Loss 0.949778609400276 0 0.89198124 0 prediction 0.899557218800553 Functional Loss - GATAD1 ENSG00000244055 ncRNA_intronic Human antisense chr7:92087399 chr7:92087399 . . 0 21 hm5C_associated_SNPs_49775 0 0 0 0 0 Ribosome 0.500231646214682 0 0.78396248 0.000463292429364159 hm5C_site_5095 DeepMRMD:0.78396248;iRNA_m5C:0.000463292429364159 5096 chr18 7231272 7231272 1 + C T PAAD 7231272 + 7231252 7231292 41 ACCCGCGGTCCCTGCTGAAGCGGGGCATGCACCACGTCAGC ACCCGCGGTCCCTGCTGAAGTGGGGCATGCACCACGTCAGC Direct Loss 0.949773032333608 0 0.9398995 0 prediction 0.899546064667216 Functional Loss - LRRC30 ENSG00000206422 CDS Human protein_coding chr18:7231272 chr18:7231272 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_49776 0 0 0 0 0 unknown 0.50023164392305 0 0.879799 0.000463287846099503 hm5C_site_5096 DeepMRMD:0.879799;iRNA_m5C:0.000463287846099503 5097 chr19 13869757 13869757 1 + C A rs10425445 13869757 + 13869737 13869777 41 GCCAACTGCGACTACGTGATCGTGAGTGGCGCCCAGCGCAA GCCAACTGCGACTACGTGATAGTGAGTGGCGCCCAGCGCAA Direct Loss 0.949768759293967 0 0.6141389 0 prediction 0.899537518587935 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869757 chr19:13869757 synonymous SNV . 0 21 hm5C_associated_SNPs_49777 0 0 1 0 2 Cytosol 0.500231653311781 0 0.2282778 0.00046330662356131 hm5C_site_5097 DeepMRMD:0.2282778;iRNA_m5C:0.00046330662356131 5098 chr11 65124899 65124899 1 + C T rs7102371 65124899 + 65124879 65124919 41 GAGCTCTAAAGATGGGGCTTCGGGGGTAGGAATCCAGGATG GAGCTCTAAAGATGGGGCTTTGGGGGTAGGAATCCAGGATG Direct Loss 0.949755980611133 0 0.91671836 0 prediction 0.899511961222266 Functional Loss - TIGD3 ENSG00000173825 UTR3 Human protein_coding chr11:65124899 chr11:65124899 . . 0 21 hm5C_associated_SNPs_49778 0 0 0 0 0 Endoplasmic reticulum 0.500231642603618 0 0.83343672 0.000463285207235042 hm5C_site_5098 DeepMRMD:0.83343672;iRNA_m5C:0.000463285207235042 5099 chr2 96936907 96936907 1 + C T SKCM 96936907 + 96936887 96936927 41 ATGACGCGATCCGCGTGTTTCAGGAGGATCCCAACTCGGAT ATGACGCGATCCGCGTGTTTTAGGAGGATCCCAACTCGGAT Direct Loss 0.949741645480601 0 0.9472948 0 prediction 0.899483290961201 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96936907 chr2:96936907 stopgain 0.997 1 21 hm5C_associated_SNPs_49779 0 0 1 0 1 Ribosome 0.500229858368481 0 0.8945896 0.000459716736961324 hm5C_site_5099 DeepMRMD:0.8945896;iRNA_m5C:0.000459716736961324 5100 chr3 186917516 186917516 1 + C T CESC 186917516 + 186917496 186917536 41 AGCATGCTGGAGGAGAACATCGAGGGCCTGGTGGACAACCT AGCATGCTGGAGGAGAACATTGAGGGCCTGGTGGACAACCT Direct Loss 0.949719764266686 0 0.89204943 0 prediction 0.899439528533372 Functional Loss - RTP1 ENSG00000175077 CDS Human protein_coding chr3:186917516 chr3:186917516 synonymous SNV . 0 21 hm5C_associated_SNPs_49780 0 0 0 0 0 exosome 0.500231643921084 0 0.78409886 0.000463287842168647 hm5C_site_5100 DeepMRMD:0.78409886;iRNA_m5C:0.000463287842168647 5101 chr20 5903859 5903859 1 + C A LUAD 5903859 + 5903839 5903879 41 GCGTCCAGGCCCCTGAGGACCTGGAGTGGGAGCGCTATAGG GCGTCCAGGCCCCTGAGGACATGGAGTGGGAGCGCTATAGG Direct Loss 0.949692242197016 0 0.48032576 0 prediction 0.899384484394033 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5903859 chr20:5903859 nonsynonymous SNV 0.056 1 21 hm5C_associated_SNPs_49781 0 0 0 0 0 exosome 0.50023164384397 0 0 0.000463287687940683 hm5C_site_5101 DeepMRMD:0;iRNA_m5C:0.000463287687940683 5102 chr2 223168687 223168687 1 + C T OV 223168687 + 223168667 223168707 41 AGCTCGCCACCGTGGGATCACGGGAACCAGAGGCAAGAGGC AGCTCGCCACCGTGGGATCATGGGAACCAGAGGCAAGAGGC Direct Loss 0.949663656196075 0 0.8968976 0 prediction 0.899327312392149 Functional Loss - CCDC140 ENSG00000163081 CDS Human protein_coding chr2:223168687 chr2:223168687 synonymous SNV . 0 21 hm5C_associated_SNPs_49782 0 0 0 0 0 exosome 0.500231643921091 0 0.7937952 0.000463287842181304 hm5C_site_5102 DeepMRMD:0.7937952;iRNA_m5C:0.000463287842181304 5103 chrX 47104862 47104862 1 + C T OV 47104862 + 47104842 47104882 41 TCTTCACCACTGTGGAGACCCTGGAGAAGGAAAACCCCTGG TCTTCACCACTGTGGAGACCTTGGAGAAGGAAAACCCCTGG Direct Loss 0.949661474666144 0 0.41956857 0 prediction 0.899322949332287 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47104862 chrX:47104862 synonymous SNV . 0 21 hm5C_associated_SNPs_49783 0 0 1 0 2 cytosol 0.500231648174489 0 0 0.000463296348978792 hm5C_site_5103 DeepMRMD:0;iRNA_m5C:0.000463296348978792 5104 chr7 128371246 128371246 1 + C T rs41274144 128371246 + 128371226 128371266 41 TTCAGCTGCTGAGGGATTATCGGGATGGAGAGTAGGAGAAA TTCAGCTGCTGAGGGATTATTGGGATGGAGAGTAGGAGAAA Direct Loss 0.949660719939488 0 0.9264121 0 prediction 0.899321439878977 Functional Loss - FAM71F1 ENSG00000135248 UTR3 Human protein_coding chr7:128371246 chr7:128371246 . . 0 21 hm5C_associated_SNPs_49784 0 0 0 0 1 exosome 0.500231643921092 0 0.8528242 0.000463287842184856 hm5C_site_5104 DeepMRMD:0.8528242;iRNA_m5C:0.000463287842184856 Male-pattern baldness 5105 chr17 72345464 72345464 1 + C T rs114774679 72345464 + 72345444 72345484 41 AGGCCCGGGGCCGGCAGGATCGGGGTGACATCCGCCACATC AGGCCCGGGGCCGGCAGGATTGGGGTGACATCCGCCACATC Direct Loss 0.949646684572276 0 0.96947384 0 prediction 0.899293369144551 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345464 chr17:72345464 nonsynonymous SNV 0.277 2 21 hm5C_associated_SNPs_49785 0 0 0 0 1 exosome 0.500231643757717 0 0.93894768 0.000463287515434452 hm5C_site_5105 DeepMRMD:0.93894768;iRNA_m5C:0.000463287515434452 5106 chr5 157106986 157106986 1 + C T COAD 157106986 + 157106966 157107006 41 AGCAACCGGTACTTAACCTTCGGGATACCACCACCAGTTTA AGCAACCGGTACTTAACCTTTGGGATACCACCACCAGTTTA Direct Loss 0.949638051961162 0 0.934178 0 prediction 0.899276103922324 Functional Loss - C5orf52 ENSG00000187658 CDS Human protein_coding chr5:157106986 chr5:157106986 synonymous SNV . 0 21 hm5C_associated_SNPs_49786 0 0 0 0 0 unknown 0.500231643922313 0 0.868356 0.000463287844625349 hm5C_site_5106 DeepMRMD:0.868356;iRNA_m5C:0.000463287844625349 5107 chr11 66272127 66272127 1 + C T UCEC 66272127 + 66272107 66272147 41 GCCGGAGGGCGGGCCCTGTACGAGGGGTATGCAACAGTCAC GCCGGAGGGCGGGCCCTGTATGAGGGGTATGCAACAGTCAC Direct Loss 0.949631477907269 0 0.91690004 0 prediction 0.899262955814538 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66272127 chr11:66272127 synonymous SNV . 0 21 hm5C_associated_SNPs_49787 0 0 1 0 1 Nucleus 0.500231642327916 0 0.83380008 0.000463284655831009 hm5C_site_5107 DeepMRMD:0.83380008;iRNA_m5C:0.000463284655831009 5108 chrX 152914962 152914962 1 + C A LUAD 152914962 + 152914942 152914982 41 ACCTCTATCTGGGCAGTGCCCGGGATTCCGCCAATTTGGAG ACCTCTATCTGGGCAGTGCCAGGGATTCCGCCAATTTGGAG Direct Loss 0.949618450015875 0 0.9422976 0 prediction 0.899236900031749 Functional Loss - DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152914962 chrX:152914962 synonymous SNV . 0 21 hm5C_associated_SNPs_49788 0 0 0 0 0 cytosol 0.500231643921256 0 0.8845952 0.000463287842512372 hm5C_site_5108 DeepMRMD:0.8845952;iRNA_m5C:0.000463287842512372 5109 chr6 4892507 4892507 1 + C T rs11962921 4892507 + 4892487 4892527 41 GCTTTATTGGGCCCCGGTGCCGAGAGGGCCAGGATGGGGAG GCTTTATTGGGCCCCGGTGCTGAGAGGGCCAGGATGGGGAG Direct Loss 0.949616718040277 0 0.875345 0 prediction 0.899233436080555 Functional Loss - CDYL ENSG00000153046 CDS Human protein_coding chr6:4892507 chr6:4892507 synonymous SNV . 0 21 hm5C_associated_SNPs_49789 0 0 1 0 0 Cytoplasm 0.500231643919144 0 0.75069 0.000463287838287751 hm5C_site_5109 DeepMRMD:0.75069;iRNA_m5C:0.000463287838287751 5110 chr11 57428663 57428663 1 + C G LUAD 57428663 + 57428643 57428683 41 GTTTACCTTTGGGCATGTCTCAAGAGGATAATCAGCTCAAG GTTTACCTTTGGGCATGTCTGAAGAGGATAATCAGCTCAAG Direct Loss 0.949612514268031 0 0.9072938 0 prediction 0.899225028536062 Functional Loss - CLP1 ENSG00000172409 CDS Human protein_coding chr11:57428663 chr11:57428663 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_49790 0 0 0 0 0 Cytosol 0.500231883167 0 0.8145876 0.000463766333999471 hm5C_site_5110 DeepMRMD:0.8145876;iRNA_m5C:0.000463766333999471 5111 chr11 66243444 66243444 1 + C T LGG 66243444 + 66243424 66243464 41 GCCAGGAGGCCGGCCTCTGCCTGGACCCTGGGCCGCCTAGC GCCAGGAGGCCGGCCTCTGCTTGGACCCTGGGCCGCCTAGC Direct Loss 0.949606881975052 0 0.5601009 0 prediction 0.899213763950105 Functional Loss - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66243444 chr11:66243444 synonymous SNV . 0 21 hm5C_associated_SNPs_49791 0 0 1 0 0 Ribosome 0.500231643943896 0 0.1202018 0.000463287887791708 hm5C_site_5111 DeepMRMD:0.1202018;iRNA_m5C:0.000463287887791708 5112 chr21 45503079 45503079 1 + C T BLCA 45503079 + 45503059 45503099 41 GGCAGGAGAGCAGCTCCTCTCTAGAGATGCCCTCAGGGGTG GGCAGGAGAGCAGCTCCTCTTTAGAGATGCCCTCAGGGGTG Direct Loss 0.949605093248995 0 0.26067108 0 prediction 0.89921018649799 Functional Loss - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45503079 chr21:45503079 synonymous SNV . 0 21 hm5C_associated_SNPs_49792 0 0 1 0 0 Cytosol 0.500231643921242 0 0 0.000463287842484839 hm5C_site_5112 DeepMRMD:0;iRNA_m5C:0.000463287842484839 5113 chr19 18779746 18779746 1 + C T COAD 18779746 + 18779726 18779766 41 GGCGGCCGCATCTATGCCCTCGGGGGCCGCATGGACCACGT GGCGGCCGCATCTATGCCCTTGGGGGCCGCATGGACCACGT Direct Loss 0.949589711155202 0 0.91882896 0 prediction 0.899179422310404 Functional Loss - KLHL26 ENSG00000167487 CDS Human protein_coding chr19:18779746 chr19:18779746 synonymous SNV . 0 21 hm5C_associated_SNPs_49793 0 0 1 0 0 chromatin 0.500231643922023 0 0.83765792 0.000463287844046256 hm5C_site_5113 DeepMRMD:0.83765792;iRNA_m5C:0.000463287844046256 5114 chr12 7475097 7475097 1 + C T UCEC 7475097 + 7475077 7475117 41 GGAGCAGTGGAGGGTGCAAACTGGGCTGGAGCTATATGAGG GGAGCAGTGGAGGGTGCAAATTGGGCTGGAGCTATATGAGG Direct Loss 0.949575442173592 0 0.88285744 0 prediction 0.899150884347183 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7475097 chr12:7475097 nonsynonymous SNV 0.944 3 21 hm5C_associated_SNPs_49794 0 0 0 0 2 exosome 0.500231643921092 0 0.76571488 0.000463287842184856 hm5C_site_5114 DeepMRMD:0.76571488;iRNA_m5C:0.000463287842184856 5115 chr3 149375530 149375530 1 + C A rs148720962 149375530 + 149375510 149375550 41 GGAGTGGTGCCGGATGAGCGCGCGAGCTCCAGCGGGCACTA GGAGTGGTGCCGGATGAGCGAGCGAGCTCCAGCGGGCACTA Direct Loss 0.949571217988117 0 0.8880787 0 prediction 0.899142435976235 Functional Loss - WWTR1 ENSG00000241313 ncRNA_exonic Human antisense chr3:149375530 chr3:149375530 . . 0 21 hm5C_associated_SNPs_49795 0 0 0 0 0 Endoplasmic reticulum 0.500231635808279 0 0.7761574 0.000463271616558236 hm5C_site_5115 DeepMRMD:0.7761574;iRNA_m5C:0.000463271616558236 5116 chr5 128430720 128430720 1 + C T BLCA 128430720 + 128430700 128430740 41 GTGGACTTGCCCAAGGGCTTCGCGGTGAGCGAGCGCTGCAA GTGGACTTGCCCAAGGGCTTTGCGGTGAGCGAGCGCTGCAA Direct Loss 0.949569753785194 0 0.57919854 0 prediction 0.899139507570388 Functional Loss - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128430720 chr5:128430720 synonymous SNV . 0 21 hm5C_associated_SNPs_49796 0 0 1 0 1 Ribosome 0.500231643921092 0 0.15839708 0.000463287842184856 hm5C_site_5116 DeepMRMD:0.15839708;iRNA_m5C:0.000463287842184856 5117 chr19 49540323 49540323 1 + C T rs189595614 49540323 + 49540303 49540343 41 TGAGCCTGCCCTCGGGCTCTCAAGGCTAGGCGAGGGTGTGA TGAGCCTGCCCTCGGGCTCTTAAGGCTAGGCGAGGGTGTGA Direct Loss 0.949561316544665 0 0.90988755 0 prediction 0.89912263308933 Functional Loss - SNAR-G1 ENSG00000267631 intronic Human protein_coding chr19:49540323 chr19:49540323 . . 0 21 hm5C_associated_SNPs_49797 0 0 0 0 0 unknown 0.500231643921092 0 0.8197751 0.000463287842184856 hm5C_site_5117 DeepMRMD:0.8197751;iRNA_m5C:0.000463287842184856 5118 chr2 233324405 233324405 1 + C T rs148879701 233324405 + 233324385 233324425 41 ACCCAAGGAGGCTACTGGATCGGGGATTCCCAGGGGGGCTT ACCCAAGGAGGCTACTGGATTGGGGATTCCCAGGGGGGCTT Direct Loss 0.949539578652813 0 0.934419 0 prediction 0.899079157305627 Functional Loss - ALPI ENSG00000163295 UTR3 Human protein_coding chr2:233324405 chr2:233324405 . . 0 21 hm5C_associated_SNPs_49798 0 0 1 0 0 Cytosol 0.500231643928437 0 0.868838 0.000463287856873329 hm5C_site_5118 DeepMRMD:0.868838;iRNA_m5C:0.000463287856873329 5119 chr1 3669271 3669271 1 + C T COAD 3669271 + 3669251 3669291 41 TCCTCCAGAGCATGGCCAGCCGGGACGCCCGGTGCCCAGAA TCCTCCAGAGCATGGCCAGCTGGGACGCCCGGTGCCCAGAA Direct Loss 0.949537641417239 0 0.93650055 0 prediction 0.899075282834477 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3669271 chr1:3669271 nonsynonymous SNV 0.018 3 21 hm5C_associated_SNPs_49799 0 0 0 0 1 exosome 0.500231643921091 0 0.8730011 0.000463287842182414 hm5C_site_5119 DeepMRMD:0.8730011;iRNA_m5C:0.000463287842182414 5120 chr19 52856992 52856992 1 + C G rs115821660 52856992 + 52856972 52857012 41 CTCAGGAGGAGTGGAAATCCCTGGACCCTGGACAGAGGGCT CTCAGGAGGAGTGGAAATCCGTGGACCCTGGACAGAGGGCT Direct Loss 0.949534243543406 0 0.43205428 0 prediction 0.899068487086812 Functional Loss - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52856992 chr19:52856992 nonsynonymous SNV 0.024 3 21 hm5C_associated_SNPs_49800 0 0 0 0 2 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5120 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5121 chr3 122578975 122578975 1 + C T READ 122578975 + 122578955 122578995 41 AATTCTTCTCCTCCTGTTTTCGGGAGCTACACTGTCATCCA AATTCTTCTCCTCCTGTTTTTGGGAGCTACACTGTCATCCA Direct Loss 0.949531713320992 0 0.9500934 0 prediction 0.899063426641983 Functional Loss - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122578975 chr3:122578975 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_49801 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0 0.9001868 0.000463287842183968 hm5C_site_5121 DeepMRMD:0.9001868;iRNA_m5C:0.000463287842183968 5122 chr11 64981537 64981537 1 + C T LIHC 64981537 + 64981517 64981557 41 TGAGGCCTCCACCAACGACTCGGGGGCCTGGCTGAGGGCCA TGAGGCCTCCACCAACGACTTGGGGGCCTGGCTGAGGGCCA Direct Loss 0.949518714540513 0 0.9389771 0 prediction 0.899037429081027 Functional Loss - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64981537 chr11:64981537 . . 0 21 hm5C_associated_SNPs_49802 0 0 0 0 0 unknown 0.500231643921092 0 0.8779542 0.000463287842184856 hm5C_site_5122 DeepMRMD:0.8779542;iRNA_m5C:0.000463287842184856 5123 chr19 41510037 41510037 1 + C T SKCM 41510037 + 41510017 41510057 41 TTCTCTGGCCGGGGAAAAATCGCCATGGTCGACCCATTCTT TTCTCTGGCCGGGGAAAAATTGCCATGGTCGACCCATTCTT Direct Loss 0.949493718051738 0 0.91701746 0 prediction 0.898987436103476 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510037 chr19:41510037 synonymous SNV . 0 21 hm5C_associated_SNPs_49803 0 0 0 0 1 Nucleus 0.500231643921092 0 0.83403492 0.000463287842184856 hm5C_site_5123 DeepMRMD:0.83403492;iRNA_m5C:0.000463287842184856 5124 chr17 8170154 8170154 1 + C G HNSC 8170154 + 8170134 8170174 41 CCCAGGTGCTGAAGCGTTACCGGGATGCTGGCCTCCATTGC CCCAGGTGCTGAAGCGTTACGGGGATGCTGGCCTCCATTGC Direct Loss 0.949488458768774 0 0.9065128 0 prediction 0.898976917537548 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170154 chr17:8170154 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49804 0 0 1 0 2 Nucleus 0.500231643921098 0 0.8130256 0.000463287842196847 hm5C_site_5124 DeepMRMD:0.8130256;iRNA_m5C:0.000463287842196847 5125 chr17 6930105 6930105 1 + C T SKCM 6930105 + 6930085 6930125 41 AACGCACAGCCGCATCCATTCGGGAGAGAAGCCGTATAAGT AACGCACAGCCGCATCCATTTGGGAGAGAAGCCGTATAAGT Direct Loss 0.949483920409546 0 0.9192504 0 prediction 0.898967840819092 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6930105 chr17:6930105 nonsynonymous SNV 0.984 2 21 hm5C_associated_SNPs_49805 0 0 0 0 2 Endoplasmic reticulum 0.500231643420115 0 0.8385008 0.000463286840230559 hm5C_site_5125 DeepMRMD:0.8385008;iRNA_m5C:0.000463286840230559 5126 chr14 90510947 90510947 1 + C G rs35944390 90510947 + 90510927 90510967 41 GTGGGGGTGTGGCGATAGAGCAGGAGGCAGGGAGACAGGGC GTGGGGGTGTGGCGATAGAGGAGGAGGCAGGGAGACAGGGC Direct Loss 0.949479905914179 0 0.85968816 0 prediction 0.898959811828357 Functional Loss - TDP1 ENSG00000042088 UTR3 Human protein_coding chr14:90510947 chr14:90510947 . . 0 21 hm5C_associated_SNPs_49806 1 0 0 0 0 chromatin 0.500231643922287 0 0.71937632 0.0004632878445745 hm5C_site_5126 DeepMRMD:0.71937632;iRNA_m5C:0.0004632878445745 Spinocerebellar Ataxia, Recessive Spinocerebellar Ataxia, Recessive 5127 chr11 70281208 70281208 1 + C T COAD 70281208 + 70281188 70281228 41 ATTGACGACGGCTGGTGGCGCGGGGTGTGCAAGGGCCGGTA ATTGACGACGGCTGGTGGCGTGGGGTGTGCAAGGGCCGGTA Direct Loss 0.949471916809061 0 0.9182441 0 prediction 0.898943833618122 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70281208 chr11:70281208 synonymous SNV . 0 21 hm5C_associated_SNPs_49807 0 0 1 0 2 Ribosome 0.500231643936951 0 0.8364882 0.000463287873901264 hm5C_site_5127 DeepMRMD:0.8364882;iRNA_m5C:0.000463287873901264 5128 chr11 1861788 1861788 1 + C A READ 1861788 + 1861768 1861808 41 TGCAGATAGCGGCCACGGAGCTGGAGAAGGAGGAGAGCCGC TGCAGATAGCGGCCACGGAGATGGAGAAGGAGGAGAGCCGC Direct Loss 0.949464222854616 0 0.42857462 0 prediction 0.898928445709232 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1861788 chr11:1861788 nonsynonymous SNV 0.601 2 21 hm5C_associated_SNPs_49808 0 0 0 0 1 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5128 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5129 chr17 1637116 1637116 1 + C T COAD 1637116 + 1637096 1637136 41 GGTGGCGGGGGCCTGGGCAGCGGGAGCGACGACAACGCCCT GGTGGCGGGGGCCTGGGCAGTGGGAGCGACGACAACGCCCT Direct Loss 0.949461461772736 0 0.9382621 0 prediction 0.898922923545472 Functional Loss - WDR81 ENSG00000167716 CDS Human protein_coding chr17:1637116 chr17:1637116 synonymous SNV . 0 21 hm5C_associated_SNPs_49809 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0 0.8765242 0.000463287842184856 hm5C_site_5129 DeepMRMD:0.8765242;iRNA_m5C:0.000463287842184856 5130 chr19 51630443 51630443 1 + C T LUAD 51630443 + 51630423 51630463 41 CCCCTCACAGCCCTCAAACCCGGGGGTGCTGGAGCTGCCTT CCCCTCACAGCCCTCAAACCTGGGGGTGCTGGAGCTGCCTT Direct Loss 0.949450994085514 0 0.9391144 0 prediction 0.898901988171029 Functional Loss - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51630443 chr19:51630443 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49810 0 0 0 0 0 exosome 0.500231643921306 0 0.8782288 0.000463287842611182 hm5C_site_5130 DeepMRMD:0.8782288;iRNA_m5C:0.000463287842611182 5131 chr15 45898653 45898653 1 + C T UCEC 45898653 + 45898633 45898673 41 AGTTGGAAAGGGAGCAGCAACGAGAGAAGGAGTTTGAAAGA AGTTGGAAAGGGAGCAGCAATGAGAGAAGGAGTTTGAAAGA Direct Loss 0.949444293800336 0 0.8464613 0 prediction 0.898888587600673 Functional Loss - BLOC1S6 ENSG00000104164 CDS Human protein_coding chr15:45898653 chr15:45898653 stopgain 0.999 1 21 hm5C_associated_SNPs_49811 0 0 1 0 1 Cytosol 0.500231643921092 0 0.6929226 0.000463287842184856 hm5C_site_5131 DeepMRMD:0.6929226;iRNA_m5C:0.000463287842184856 5132 chr16 72110869 72110869 1 + C T OV 72110869 + 72110849 72110889 41 CTGGAGGAGGACACCTGGTACGCGGCTGGGATCCTAAGCTT CTGGAGGAGGACACCTGGTATGCGGCTGGGATCCTAAGCTT Direct Loss 0.949434821866629 0 0.34846014 0 prediction 0.898869643733257 Functional Loss - HPR ENSG00000261701 CDS Human protein_coding chr16:72110869 chr16:72110869 nonsynonymous SNV 0.527 0 21 hm5C_associated_SNPs_49812 0 0 1 0 0 nucleus 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5132 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5133 chr20 43550282 43550282 1 + C T COAD 43550282 + 43550262 43550302 41 GTGAGCGGGCGGCTGCTGTACGCGGGCCGGGCCCAAAAGCG GTGAGCGGGCGGCTGCTGTATGCGGGCCGGGCCCAAAAGCG Direct Loss 0.949433095281497 0 0.44637048 0 prediction 0.898866190562995 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43550282 chr20:43550282 synonymous SNV . 0 21 hm5C_associated_SNPs_49813 0 0 1 0 2 chromatin 0.500231643921093 0 0 0.000463287842185078 hm5C_site_5133 DeepMRMD:0;iRNA_m5C:0.000463287842185078 5134 chr19 48258667 48258667 1 + C A rs565290384 48258667 + 48258647 48258687 41 CAGGAGCTGTTCCGGCTGCGCGGGATCAAGGCCCAGGTGGC CAGGAGCTGTTCCGGCTGCGAGGGATCAAGGCCCAGGTGGC Direct Loss 0.94942106846171 0 0.9111283 0 prediction 0.898842136923419 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48258667 chr19:48258667 synonymous SNV . 0 21 hm5C_associated_SNPs_49814 0 0 1 0 1 unknown 0.500231642488537 0 0.8222566 0.000463284977074485 hm5C_site_5134 DeepMRMD:0.8222566;iRNA_m5C:0.000463284977074485 5135 chr19 4432183 4432183 1 + C T UCEC 4432183 + 4432163 4432203 41 AGACGCCCAAGGCCTCCAAGCGGGAGAGGAGAGACGAGCAG AGACGCCCAAGGCCTCCAAGTGGGAGAGGAGAGACGAGCAG Direct Loss 0.949402787167321 0 0.93414617 0 prediction 0.898805574334642 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4432183 chr19:4432183 nonsynonymous SNV 0.733 1 21 hm5C_associated_SNPs_49815 0 0 1 0 0 Nucleus 0.500231643920783 0 0.86829234 0.000463287841565574 hm5C_site_5135 DeepMRMD:0.86829234;iRNA_m5C:0.000463287841565574 5136 chr1 26517184 26517184 1 + C A LUAD 26517184 + 26517164 26517204 41 ACAGGCCTCGAGGGGTGGGGCGGGACTCAGGAGGACCGTAT ACAGGCCTCGAGGGGTGGGGAGGGACTCAGGAGGACCGTAT Direct Loss 0.949401278156963 0 0.905953 0 prediction 0.898802556313925 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26517184 chr1:26517184 synonymous SNV . 0 21 hm5C_associated_SNPs_49816 0 0 0 0 0 exosome 0.500231643921092 0 0.811906 0.000463287842184634 hm5C_site_5136 DeepMRMD:0.811906;iRNA_m5C:0.000463287842184634 5137 chr11 60701764 60701764 1 + C A rs546052784 60701764 + 60701744 60701784 41 GATCGAGGCACAGCGCCAGTCGGGAGTGGGCTGGGGCGGCT GATCGAGGCACAGCGCCAGTAGGGAGTGGGCTGGGGCGGCT Direct Loss 0.949400685918436 0 0.90551114 0 prediction 0.898801371836872 Functional Loss - TMEM132A ENSG00000006118 intronic Human protein_coding chr11:60701764 chr11:60701764 . . 0 21 hm5C_associated_SNPs_49817 0 0 1 0 0 Ribosome 0.500239193740976 0 0.81102228 0.000478387481952058 hm5C_site_5137 DeepMRMD:0.81102228;iRNA_m5C:0.000478387481952058 5138 chr9 4685060 4685060 1 + C T UCEC 4685060 + 4685040 4685080 41 CAGTATCAGAACTGAGGCAACGGGAAGAAGAGTGGCGACAG CAGTATCAGAACTGAGGCAATGGGAAGAAGAGTGGCGACAG Direct Loss 0.949379085981009 0 0.8687649 0 prediction 0.898758171962017 Functional Loss - CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4685060 chr9:4685060 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_49818 0 0 0 0 1 Ribosome 0.5002316439204 0 0.7375298 0.00046328784080063 hm5C_site_5138 DeepMRMD:0.7375298;iRNA_m5C:0.00046328784080063 5139 chr20 53260081 53260081 1 + C T COAD 53260081 + 53260061 53260101 41 CCTACTGGCAGCACATCACACGGCAGCACAGCACGGGACAG CCTACTGGCAGCACATCACATGGCAGCACAGCACGGGACAG Direct Loss 0.949377795864312 0 0.49147493 0 prediction 0.898755591728624 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53260081 chr20:53260081 nonsynonymous SNV 0.982 5 21 hm5C_associated_SNPs_49819 0 0 0 0 2 exosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5139 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5140 chr1 229431652 229431652 1 + C T PRAD 229431652 + 229431632 229431672 41 GCTCTCCTCGTCTATGATATCACCAGGTAATGCCAGCTCCC GCTCTCCTCGTCTATGATATTACCAGGTAATGCCAGCTCCC Direct Loss 0.949377508362688 0 0.517538 0 prediction 0.898755016725375 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431652 chr1:229431652 synonymous SNV 1.000 0 21 hm5C_associated_SNPs_49820 0 0 1 2 2 Ribosome 0.5002316439409 0 0.0350760000000001 0.0004632878818005 hm5C_site_5140 DeepMRMD:0.0350760000000001;iRNA_m5C:0.0004632878818005 5141 chr19 55494465 55494465 1 + C T COAD 55494465 + 55494445 55494485 41 CGCAGACGTCCGTGCTTCACCGAGAGGATCTGGAAAGGCTC CGCAGACGTCCGTGCTTCACTGAGAGGATCTGGAAAGGCTC Direct Loss 0.949376962388001 0 0.8477249 0 prediction 0.898753924776002 Functional Loss - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55494465 chr19:55494465 stopgain 0.000 0 21 hm5C_associated_SNPs_49821 0 0 0 0 0 Cytosol 0.500232215828372 0 0.6954498 0.000464431656743702 hm5C_site_5141 DeepMRMD:0.6954498;iRNA_m5C:0.000464431656743702 5142 chr19 54403952 54403952 1 + C T LUAD 54403952 + 54403932 54403972 41 TGTAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACCTT TGTAAGGAGAACGTCTTCCCTGGGACGACAACCCGCACCTT Direct Loss 0.949371047322163 0 0.9038191 0 prediction 0.898742094644326 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403952 chr19:54403952 synonymous SNV . 0 21 hm5C_associated_SNPs_49822 0 0 0 0 2 Cytosol 0.500231643921093 0 0.8076382 0.000463287842185078 hm5C_site_5142 DeepMRMD:0.8076382;iRNA_m5C:0.000463287842185078 5143 chr19 46663987 46663987 1 + C T rs199636519 46663987 + 46663967 46664007 41 TCGTGTCCCTGAGCGAGACCCGCCAATGTGGTCCCCCCTGC TCGTGTCCCTGAGCGAGACCTGCCAATGTGGTCCCCCCTGC Direct Loss 0.949367516857192 0 0.73604125 0 prediction 0.898735033714384 Functional Loss - IGFL2 ENSG00000204866 CDS Human protein_coding chr19:46663987 chr19:46663987 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49823 0 0 0 0 0 Ribosome 0.500231643871298 0 0.4720825 0.000463287742595409 hm5C_site_5143 DeepMRMD:0.4720825;iRNA_m5C:0.000463287742595409 5144 chr17 75525288 75525288 1 + C T rs139131943 75525288 + 75525268 75525308 41 CGCTGGCTGTTCCGGGGGCCCGGGAGGGCAGAGCTGTCAGA CGCTGGCTGTTCCGGGGGCCTGGGAGGGCAGAGCTGTCAGA Direct Loss 0.949364691470107 0 0.91847163 0 prediction 0.898729382940214 Functional Loss - SEPT9;LOC100507351 ENSG00000267665 ncRNA_exonic Human lincRNA chr17:75525288 chr17:75525288 . . 0 21 hm5C_associated_SNPs_49824 0 0 0 0 0 unknown 0.500231643921108 0 0.83694326 0.000463287842215054 hm5C_site_5144 DeepMRMD:0.83694326;iRNA_m5C:0.000463287842215054 5145 chr7 141491041 141491041 1 + C T STAD 141491041 + 141491021 141491061 41 TGTGGAAGACAGTGTGTGCTCGGAGATGCTGGGGCCCATGA TGTGGAAGACAGTGTGTGCTTGGAGATGCTGGGGCCCATGA Direct Loss 0.94935611920078 0 0.90070695 0 prediction 0.89871223840156 Functional Loss - TAS2R5 ENSG00000127366 CDS Human protein_coding chr7:141491041 chr7:141491041 nonsynonymous SNV 0.004 1 21 hm5C_associated_SNPs_49825 0 0 1 0 0 nucleolus 0.500231643923605 0 0.8014139 0.000463287847209948 hm5C_site_5145 DeepMRMD:0.8014139;iRNA_m5C:0.000463287847209948 5146 chr9 2622264 2622264 1 + C T rs532555108 2622264 + 2622244 2622284 41 CCCCGGGAGAGCGGCGCCACCGGAACCGGTGAGTGAGGACG CCCCGGGAGAGCGGCGCCACTGGAACCGGTGAGTGAGGACG Direct Loss 0.94935053921352 0 0.7693813 0 prediction 0.898701078427039 Functional Loss - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2622264 chr9:2622264 synonymous SNV . 0 21 hm5C_associated_SNPs_49826 1 0 0 0 1 Endoplasmic reticulum 0.5002316439725 0 0.5387626 0.00046328794500039 hm5C_site_5146 DeepMRMD:0.5387626;iRNA_m5C:0.00046328794500039 not specified not specified 5147 chr11 118851338 118851338 1 + C T rs557694929 118851338 + 118851318 118851358 41 ACACGGCCTCGATCTTGCCTCTGGAAGTTGACCGAGGAGGG ACACGGCCTCGATCTTGCCTTTGGAAGTTGACCGAGGAGGG Direct Loss 0.949336882228008 0 0.25959104 0 prediction 0.898673764456016 Functional Loss - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118851338 chr11:118851338 synonymous SNV . 0 21 hm5C_associated_SNPs_49827 0 0 0 0 1 unknown 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5147 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5148 chr15 59064120 59064120 1 + C A PAAD 59064120 + 59064100 59064140 41 AATCTCCGAGCCTGGACTCTCTGGAGTCGTTCTCTAACCTG AATCTCCGAGCCTGGACTCTATGGAGTCGTTCTCTAACCTG Direct Loss 0.949310684245112 0 0.89912045 0 prediction 0.898621368490224 Functional Loss - MINDY2 ENSG00000128923 CDS Human protein_coding chr15:59064120 chr15:59064120 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_49828 0 0 0 0 0 unknown 0.500231557313484 0 0.7982409 0.000463114626967354 hm5C_site_5148 DeepMRMD:0.7982409;iRNA_m5C:0.000463114626967354 5149 chr3 8590323 8590323 1 + C T UCEC 8590323 + 8590303 8590343 41 GCACAGAGGGTGCCTTTTACCGCCGCCGCCAGCTCATGCAC GCACAGAGGGTGCCTTTTACTGCCGCCGCCAGCTCATGCAC Direct Loss 0.949308637563505 0 0.90064645 0 prediction 0.898617275127011 Functional Loss - LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8590323 chr3:8590323 nonsynonymous SNV 0.967 5 21 hm5C_associated_SNPs_49829 0 0 0 0 1 exosome 0.500231643921885 0 0.8012929 0.000463287843770033 hm5C_site_5149 DeepMRMD:0.8012929;iRNA_m5C:0.000463287843770033 5150 chrX 48542272 48542272 1 + C T UCEC 48542272 + 48542252 48542292 41 GGCCCAATGGGAGGAAGGCCCGGGGGCCGAGGAGCACCAGC GGCCCAATGGGAGGAAGGCCTGGGGGCCGAGGAGCACCAGC Direct Loss 0.949301265445331 0 0.93261313 0 prediction 0.898602530890661 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48542272 chrX:48542272 synonymous SNV . 0 21 hm5C_associated_SNPs_49830 0 0 0 0 0 Endoplasmic reticulum 0.500231643921094 0 0.86522626 0.000463287842187299 hm5C_site_5150 DeepMRMD:0.86522626;iRNA_m5C:0.000463287842187299 5151 chr21 42694901 42694901 1 + C T STAD 42694901 + 42694881 42694921 41 CTCCTTGTGTGCCTGGTATTCGGGGTACCTGCTCGCAGAGC CTCCTTGTGTGCCTGGTATTTGGGGTACCTGCTCGCAGAGC Direct Loss 0.949292546272437 0 0.9706776 0 prediction 0.898585092544875 Functional Loss - FAM3B ENSG00000183844 CDS Human protein_coding chr21:42694901 chr21:42694901 nonsynonymous SNV 0.059 0 21 hm5C_associated_SNPs_49831 0 0 1 0 2 Cytosol 0.500231643921092 0 0.9413552 0.000463287842184856 hm5C_site_5151 DeepMRMD:0.9413552;iRNA_m5C:0.000463287842184856 5152 chr17 43227536 43227536 1 + C T STAD 43227536 + 43227516 43227556 41 CGCGTGTGCGGGAGCTGGAGCTGGAGCTGGACCGGCTGCGC CGCGTGTGCGGGAGCTGGAGTTGGAGCTGGACCGGCTGCGC Direct Loss 0.949285386502407 0 0.83463436 0 prediction 0.898570773004813 Functional Loss - HEXIM1 ENSG00000186834 CDS Human protein_coding chr17:43227536 chr17:43227536 synonymous SNV . 0 21 hm5C_associated_SNPs_49832 0 0 1 0 0 Ribosome 0.500231643554566 0 0.66926872 0.000463287109132127 hm5C_site_5152 DeepMRMD:0.66926872;iRNA_m5C:0.000463287109132127 5153 chr2 220379714 220379714 1 + C T LGG 220379714 + 220379694 220379734 41 ACCAGGCGGCTGGCCTGGCCCGGGGCTACCTGACCCGGCCT ACCAGGCGGCTGGCCTGGCCTGGGGCTACCTGACCCGGCCT Direct Loss 0.949279268388838 0 0.9548901 0 prediction 0.898558536777675 Functional Loss - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220379714 chr2:220379714 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_49833 0 0 1 0 0 chromatin 0.50023166641223 0 0.9097802 0.00046333282445965 hm5C_site_5153 DeepMRMD:0.9097802;iRNA_m5C:0.00046333282445965 5154 chr3 196386923 196386923 1 + C T SKCM 196386923 + 196386903 196386943 41 CCCTGCCGGGCCTGCGGAGGCTGGACTTGTCAGGAAACGCC CCCTGCCGGGCCTGCGGAGGTTGGACTTGTCAGGAAACGCC Direct Loss 0.949278573020144 0 0.8664029 0 prediction 0.898557146040289 Functional Loss - NRROS ENSG00000174004 CDS Human protein_coding chr3:196386923 chr3:196386923 synonymous SNV . 0 21 hm5C_associated_SNPs_49834 0 0 0 0 0 chromatin 0.500231643921092 0 0.7328058 0.000463287842184856 hm5C_site_5154 DeepMRMD:0.7328058;iRNA_m5C:0.000463287842184856 5155 chr17 45914387 45914387 1 + C T UCEC 45914387 + 45914367 45914407 41 AGGGGCCACCAAAGCTCTTTCTGGGGAAGGAAGGGGGCACG AGGGGCCACCAAAGCTCTTTTTGGGGAAGGAAGGGGGCACG Direct Loss 0.949273287230634 0 0.8930665 0 prediction 0.898546574461269 Functional Loss - LRRC46 ENSG00000141294 CDS Human protein_coding chr17:45914387 chr17:45914387 synonymous SNV . 0 21 hm5C_associated_SNPs_49835 0 0 0 0 0 exosome 0.500231644169882 0 0.786133 0.000463288339763057 hm5C_site_5155 DeepMRMD:0.786133;iRNA_m5C:0.000463288339763057 5156 chr11 67377938 67377938 1 + C T UCEC 67377938 + 67377918 67377958 41 TTTGACGTGTTTGTGGTGCGCGGGGCTGGGGCCTACATCTG TTTGACGTGTTTGTGGTGCGTGGGGCTGGGGCCTACATCTG Direct Loss 0.949267732823882 0 0.8716597 0 prediction 0.898535465647763 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67377938 chr11:67377938 synonymous SNV . 0 21 hm5C_associated_SNPs_49836 0 0 1 0 1 Ribosome 0.500231643921092 0 0.7433194 0.000463287842184856 hm5C_site_5156 DeepMRMD:0.7433194;iRNA_m5C:0.000463287842184856 5157 chr1 206230974 206230974 1 + C T STAD 206230974 + 206230954 206230994 41 ATGCGCCGGCGGCTCTCCGACGGCAGCCTCTCGAGCCGCCA ATGCGCCGGCGGCTCTCCGATGGCAGCCTCTCGAGCCGCCA Direct Loss 0.949266299113231 0 0.25080627 0 prediction 0.898532598226462 Functional Loss - AVPR1B ENSG00000198049 CDS Human protein_coding chr1:206230974 chr1:206230974 synonymous SNV . 0 21 hm5C_associated_SNPs_49837 0 0 0 0 0 unknown 0.500231643921093 0 0 0.000463287842185967 hm5C_site_5157 DeepMRMD:0;iRNA_m5C:0.000463287842185967 5158 chr19 56370125 56370125 1 + C T SKCM 56370125 + 56370105 56370145 41 TGTTCCTCCACGTGTGTATCCAGGAGTTCTGTGCCGCCTTG TGTTCCTCCACGTGTGTATCTAGGAGTTCTGTGCCGCCTTG Direct Loss 0.949251881919313 0 0.9501745 0 prediction 0.898503763838625 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56370125 chr19:56370125 stopgain 0.936 0 21 hm5C_associated_SNPs_49838 0 0 0 0 0 exosome 0.500213590424543 0 0.900349 0.000427180849086772 hm5C_site_5158 DeepMRMD:0.900349;iRNA_m5C:0.000427180849086772 5159 chr16 58538323 58538323 1 + C T rs199725657 58538323 + 58538303 58538343 41 CCCAGCGTGGTGCAGCATTTCGGGTGAGTCCCCGCACAGCC CCCAGCGTGGTGCAGCATTTTGGGTGAGTCCCCGCACAGCC Direct Loss 0.94924535677427 0 0.942976 0 prediction 0.898490713548539 Functional Loss - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538323 chr16:58538323 synonymous SNV . 0 21 hm5C_associated_SNPs_49839 0 0 0 0 2 Exosome 0.500231643874388 0 0.885952 0.000463287748776908 hm5C_site_5159 DeepMRMD:0.885952;iRNA_m5C:0.000463287748776908 5160 chr17 44952592 44952592 1 + C T ESCA 44952592 + 44952572 44952612 41 ACTCTCCGGGGCTGGAGAGCCGGCAGGCCTGGCAGTGGGGC ACTCTCCGGGGCTGGAGAGCTGGCAGGCCTGGCAGTGGGGC Direct Loss 0.949237850790514 0 0.9048934 0 prediction 0.898475701581029 Functional Loss - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44952592 chr17:44952592 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49840 0 0 0 0 0 exosome 0.500231643980614 0 0.8097868 0.000463287961228964 hm5C_site_5160 DeepMRMD:0.8097868;iRNA_m5C:0.000463287961228964 5161 chr8 10383136 10383136 1 + C A LUSC 10383136 + 10383116 10383156 41 GCTGCTCCTGTCCCTGGTCACGGGAACTCAGCTCGGTCCAC GCTGCTCCTGTCCCTGGTCAAGGGAACTCAGCTCGGTCCAC Direct Loss 0.949236167719555 0 0.9295102 0 prediction 0.898472335439111 Functional Loss - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10383136 chr8:10383136 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49841 0 0 0 0 0 exosome 0.500231643918948 0 0.8590204 0.000463287837896953 hm5C_site_5161 DeepMRMD:0.8590204;iRNA_m5C:0.000463287837896953 5162 chr6 121768052 121768052 1 + C T LGG 121768052 + 121768032 121768072 41 GGTTCAAGCCTACTCAACTGCTGGAGGGAAGGTGTGGCTGT GGTTCAAGCCTACTCAACTGTTGGAGGGAAGGTGTGGCTGT Direct Loss 0.949235686194976 0 0.28068376 0 prediction 0.898471372389953 Functional Loss - GJA1 ENSG00000152661 CDS Human protein_coding chr6:121768052 chr6:121768052 nonsynonymous SNV 0.773 2 21 hm5C_associated_SNPs_49842 0 0 0 0 2 Endoplasmic reticulum 0.500231643921093 0 0 0.0004632878421853 hm5C_site_5162 DeepMRMD:0;iRNA_m5C:0.0004632878421853 5163 chr15 41657766 41657766 1 + C G BLCA 41657766 + 41657746 41657786 41 ACTCAAGCGCTCTGCTATCTCTGCAGCTAAAACGGGTGTCA ACTCAAGCGCTCTGCTATCTGTGCAGCTAAAACGGGTGTCA Direct Loss 0.949226642206137 0 0.38034594 0 prediction 0.898453284412274 Functional Loss - NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41657766 chr15:41657766 nonsynonymous SNV 0.003 4 21 hm5C_associated_SNPs_49843 0 0 1 0 1 Nucleus 0.500231658373001 0 0 0.000463316746001086 hm5C_site_5163 DeepMRMD:0;iRNA_m5C:0.000463316746001086 5164 chr5 140474984 140474984 1 + C T SKCM 140474984 + 140474964 140475004 41 TGCTGAACAGAGCCCTGGATCGCGAGGAGCAGCCTGAGATC TGCTGAACAGAGCCCTGGATTGCGAGGAGCAGCCTGAGATC Direct Loss 0.949210467986503 0 0.8423709 0 prediction 0.898420935973006 Functional Loss - PCDHB2 ENSG00000112852 CDS Human protein_coding chr5:140474984 chr5:140474984 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_49844 0 0 1 0 0 exosome 0.500231643919788 0 0.6847418 0.000463287839575388 hm5C_site_5164 DeepMRMD:0.6847418;iRNA_m5C:0.000463287839575388 5165 chr5 140590324 140590324 1 + C T SKCM 140590324 + 140590304 140590344 41 GCCACGGAGCCCGGGCTATTCGGCGTGTGGGCGCACAATGG GCCACGGAGCCCGGGCTATTTGGCGTGTGGGCGCACAATGG Direct Loss 0.949201171698395 0 0.9135672 0 prediction 0.898402343396791 Functional Loss - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140590324 chr5:140590324 synonymous SNV . 0 21 hm5C_associated_SNPs_49845 0 0 0 0 0 exosome 0.500231643921092 0 0.8271344 0.000463287842184856 hm5C_site_5165 DeepMRMD:0.8271344;iRNA_m5C:0.000463287842184856 5166 chr6 134785920 134785920 1 + C A rs573455641 134785920 + 134785900 134785940 41 CGCCTCACACTGTGACACAGCGGGAGAGCCCAGAGCGACAG CGCCTCACACTGTGACACAGAGGGAGAGCCCAGAGCGACAG Direct Loss 0.949198039392091 0 0.86538494 0 prediction 0.898396078784181 Functional Loss - LINC01010 ENSG00000236700 ncRNA_exonic Human lincRNA chr6:134785920 chr6:134785920 . . 0 21 hm5C_associated_SNPs_49846 0 0 0 0 1 unknown 0.500231643922996 0 0.73076988 0.000463287845992255 hm5C_site_5166 DeepMRMD:0.73076988;iRNA_m5C:0.000463287845992255 5167 chr18 907687 907687 1 + C T UCEC 907687 + 907667 907707 41 GAAGAGGCGTACGGCGAGGACGGAAACCCGCTGCCAGACTT GAAGAGGCGTACGGCGAGGATGGAAACCCGCTGCCAGACTT Direct Loss 0.949197691269155 0 0.36641267 0 prediction 0.898395382538311 Functional Loss - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:907687 chr18:907687 synonymous SNV . 0 21 hm5C_associated_SNPs_49847 0 0 0 0 1 exosome 0.50023164392101 0 0 0.000463287842019655 hm5C_site_5167 DeepMRMD:0;iRNA_m5C:0.000463287842019655 5168 chr1 167666990 167666990 1 + C T UCEC 167666990 + 167666970 167667010 41 AACAACAGGAGGGGGCAGTGCTCGAGCCAGGCTGCAGCCCC AACAACAGGAGGGGGCAGTGTTCGAGCCAGGCTGCAGCCCC Direct Loss 0.949196129077405 0 0.29601222 0 prediction 0.898392258154809 Functional Loss - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167666990 chr1:167666990 nonsynonymous SNV 0.033 1 21 hm5C_associated_SNPs_49848 0 0 0 0 1 chromatin 0.500231643921093 0 0 0.000463287842186189 hm5C_site_5168 DeepMRMD:0;iRNA_m5C:0.000463287842186189 5169 chr16 842299 842299 1 + C T UCEC 842299 + 842279 842319 41 GAGTCGGTGCTGGGTGCTGGCGGGAAGCCCAACTGCCTGGT GAGTCGGTGCTGGGTGCTGGTGGGAAGCCCAACTGCCTGGT Direct Loss 0.949187483626333 0 0.89699584 0 prediction 0.898374967252666 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842299 chr16:842299 synonymous SNV . 0 21 hm5C_associated_SNPs_49849 0 0 1 0 2 Nucleus 0.500231643909659 0 0.79399168 0.000463287819318925 hm5C_site_5169 DeepMRMD:0.79399168;iRNA_m5C:0.000463287819318925 5170 chr16 56782275 56782275 1 + C T UCEC 56782275 + 56782255 56782295 41 CTTACAGGAGATCCAGCAGGCGGGAGAGCGCCTGCGTTCCC CTTACAGGAGATCCAGCAGGTGGGAGAGCGCCTGCGTTCCC Direct Loss 0.949182265933715 0 0.81363654 0 prediction 0.898364531867431 Functional Loss - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56782275 chr16:56782275 nonsynonymous SNV 0.987 3 21 hm5C_associated_SNPs_49850 0 0 1 0 1 Nucleus 0.50023164391857 0 0.62727308 0.000463287837140669 hm5C_site_5170 DeepMRMD:0.62727308;iRNA_m5C:0.000463287837140669 5171 chr16 67927192 67927192 1 + C T rs7196964 67927192 + 67927172 67927212 41 CCCGAGAATGGCGGCGGCGGCGGCGGCGGCGGCGGCCGCTG CCCGAGAATGGCGGCGGCGGTGGCGGCGGCGGCGGCCGCTG Direct Loss 0.949171409185425 0 0.9179416 0 prediction 0.89834281837085 Functional Loss - PSKH1 ENSG00000159792 UTR5 Human protein_coding chr16:67927192 chr16:67927192 . . 0 21 hm5C_associated_SNPs_49851 0 0 1 0 1 Cytosol 0.50023164392136 0 0.8358832 0.000463287842719096 hm5C_site_5171 DeepMRMD:0.8358832;iRNA_m5C:0.000463287842719096 5172 chr19 38817576 38817576 1 + C T LUSC 38817576 + 38817556 38817596 41 GGCCTGGGCGACTACGTGCCCGGGGAGGCCCCTGGCCAGCC GGCCTGGGCGACTACGTGCCTGGGGAGGCCCCTGGCCAGCC Direct Loss 0.949167016126465 0 0.93944466 0 prediction 0.898334032252931 Functional Loss - KCNK6 ENSG00000099337 CDS Human protein_coding chr19:38817576 chr19:38817576 synonymous SNV . 0 21 hm5C_associated_SNPs_49852 0 0 0 0 1 Ribosome 0.500231643921109 0 0.87888932 0.000463287842217941 hm5C_site_5172 DeepMRMD:0.87888932;iRNA_m5C:0.000463287842217941 5173 chr10 71025375 71025375 1 + C T UCEC 71025375 + 71025355 71025395 41 TTCTCCAGGTCAGGAGGATTCTGCAGCAGCTGGGCCTGGAC TTCTCCAGGTCAGGAGGATTTTGCAGCAGCTGGGCCTGGAC Direct Loss 0.949165250503122 0 0.79443085 0 prediction 0.898330501006243 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71025375 chr10:71025375 synonymous SNV . 0 21 hm5C_associated_SNPs_49853 0 0 0 0 1 Cytosol 0.500231646955395 0 0.5888617 0.000463293910789586 hm5C_site_5173 DeepMRMD:0.5888617;iRNA_m5C:0.000463293910789586 5174 chr16 4382387 4382387 1 + C T HNSC 4382387 + 4382367 4382407 41 GTGTGGTCCGGCCCCGTGCTCTGCACAGGGAGCTGGGCCTG GTGTGGTCCGGCCCCGTGCTTTGCACAGGGAGCTGGGCCTG Direct Loss 0.94916172569113 0 0.18637455 0 prediction 0.89832345138226 Functional Loss - GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4382387 chr16:4382387 synonymous SNV . 0 21 hm5C_associated_SNPs_49854 0 0 0 0 1 Endoplasmic reticulum 0.500231643921107 0 0 0.000463287842213278 hm5C_site_5174 DeepMRMD:0;iRNA_m5C:0.000463287842213278 5175 chr16 68373281 68373281 1 + C T STAD 68373281 + 68373261 68373301 41 TATGCACAGCTGGTGGAGTCCGGGAGGATGTGGTCGTGGAA TATGCACAGCTGGTGGAGTCTGGGAGGATGTGGTCGTGGAA Direct Loss 0.949159253222895 0 0.89039314 0 prediction 0.898318506445791 Functional Loss - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68373281 chr16:68373281 synonymous SNV . 0 21 hm5C_associated_SNPs_49855 0 0 1 0 1 Nucleus 0.500231643921092 0 0.78078628 0.000463287842184856 hm5C_site_5175 DeepMRMD:0.78078628;iRNA_m5C:0.000463287842184856 5176 chr16 89644100 89644100 1 + C A UCEC 89644100 + 89644080 89644120 41 GCTGTCAGGAGGACGATTTCCTGGGGGGCATGGAGTGCACC GCTGTCAGGAGGACGATTTCATGGGGGGCATGGAGTGCACC Direct Loss 0.949156463827484 0 0.91347563 0 prediction 0.898312927654968 Functional Loss - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89644100 chr16:89644100 nonsynonymous SNV 0.970 4 21 hm5C_associated_SNPs_49856 0 0 1 0 1 Nucleus 0.500231643943766 0 0.82695126 0.000463287887532582 hm5C_site_5176 DeepMRMD:0.82695126;iRNA_m5C:0.000463287887532582 5177 chr1 229783361 229783361 1 + C T rs137900306 229783361 + 229783341 229783381 41 CGGCAGGGGGAGGAGGCCATCGGCAACCCCCACCACGTCAG CGGCAGGGGGAGGAGGCCATTGGCAACCCCCACCACGTCAG Direct Loss 0.949145332812898 0 0.88990843 0 prediction 0.898290665625795 Functional Loss - URB2 ENSG00000135763 CDS Human protein_coding chr1:229783361 chr1:229783361 synonymous SNV . 0 21 hm5C_associated_SNPs_49857 0 0 1 0 0 Nucleus 0.500231643921334 0 0.77981686 0.000463287842667359 hm5C_site_5177 DeepMRMD:0.77981686;iRNA_m5C:0.000463287842667359 5178 chr17 694851 694851 1 + C A UCEC 694851 + 694831 694871 41 GGATGCCCATTATCAATAATCTGGAATGGGAAACCGTGCCC GGATGCCCATTATCAATAATATGGAATGGGAAACCGTGCCC Direct Loss 0.949144488305815 0 0.17410067 0 prediction 0.898288976611629 Functional Loss - MRM3 ENSG00000171861 CDS Human protein_coding chr17:694851 chr17:694851 nonsynonymous SNV 0.939 2 21 hm5C_associated_SNPs_49858 0 0 0 0 1 chromatin 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5178 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5179 chr3 184086034 184086034 1 + C T ESCA 184086034 + 184086014 184086054 41 GCCAACAACCTGCATGGATTCGAGGTGGACTCCAGAGTTTA GCCAACAACCTGCATGGATTTGAGGTGGACTCCAGAGTTTA Direct Loss 0.94913636436964 0 0.9130746 0 prediction 0.89827272873928 Functional Loss - POLR2H ENSG00000163882 CDS Human protein_coding chr3:184086034 chr3:184086034 stopgain 0.997 0 21 hm5C_associated_SNPs_49859 0 0 1 1 1 Ribosome 0.500231642400676 0 0.8261492 0.000463284801352382 hm5C_site_5179 DeepMRMD:0.8261492;iRNA_m5C:0.000463284801352382 5180 chr2 70485313 70485313 1 + C T COAD 70485313 + 70485293 70485333 41 GGCCATGGGGCGCGTCGTCGCGGAGCTCGTCTCCTCGCTGC GGCCATGGGGCGCGTCGTCGTGGAGCTCGTCTCCTCGCTGC Direct Loss 0.949128732293799 0 0.907296 0 prediction 0.898257464587597 Functional Loss - PCYOX1 ENSG00000116005 CDS Human protein_coding chr2:70485313 chr2:70485313 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49860 0 0 1 0 1 Ribosome 0.500231643928026 0 0.814592 0.000463287856052874 hm5C_site_5180 DeepMRMD:0.814592;iRNA_m5C:0.000463287856052874 5181 chr6 52053889 52053889 1 + C A UCEC 52053889 + 52053869 52053909 41 GAGAGATATCCCTCTGTGATCTGGGAGGCAAAGTGCCGCCA GAGAGATATCCCTCTGTGATATGGGAGGCAAAGTGCCGCCA Direct Loss 0.949128695132345 0 0.9075109 0 prediction 0.89825739026469 Functional Loss - IL17A ENSG00000112115 CDS Human protein_coding chr6:52053889 chr6:52053889 synonymous SNV . 0 21 hm5C_associated_SNPs_49861 0 0 0 0 1 unknown 0.500231643755297 0 0.8150218 0.000463287510594768 hm5C_site_5181 DeepMRMD:0.8150218;iRNA_m5C:0.000463287510594768 5182 chr2 44079585 44079585 1 + C T LAML 44079585 + 44079565 44079605 41 GGGTTGTCGGGGGGTGAGCGCAGGAGAGTCAGCATTGGGGT GGGTTGTCGGGGGGTGAGCGTAGGAGAGTCAGCATTGGGGT Direct Loss 0.949127271837 0 0.91775876 0 prediction 0.898254543674 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079585 chr2:44079585 synonymous SNV . 0 21 hm5C_associated_SNPs_49862 0 0 1 0 2 cytosol 0.499720309886752 0 0.83551752 0 hm5C_site_5182 DeepMRMD:0.83551752;iRNA_m5C:0 5183 chr6 147830303 147830303 1 + C T rs142462155 147830303 + 147830283 147830323 41 CTTCACGCTTGAGCCGCAGCCGGCGCCCCCCGGGCCGCCCG CTTCACGCTTGAGCCGCAGCTGGCGCCCCCCGGGCCGCCCG Direct Loss 0.949124531006332 0 0.7726909 0 prediction 0.898249062012665 Functional Loss - SAMD5 ENSG00000203727 CDS Human protein_coding chr6:147830303 chr6:147830303 nonsynonymous SNV 0.164 0 21 hm5C_associated_SNPs_49863 0 0 1 0 0 Ribosome 0.500231712308818 0 0.5453818 0.000463424617636043 hm5C_site_5183 DeepMRMD:0.5453818;iRNA_m5C:0.000463424617636043 5184 chr17 48918254 48918254 1 + C T PAAD 48918254 + 48918234 48918274 41 ATCATGGGGGAGGTGGACGGCGGCATGGCCATGCTGCGCCC ATCATGGGGGAGGTGGACGGTGGCATGGCCATGCTGCGCCC Direct Loss 0.949108282369897 0 0.7946273 0 prediction 0.898216564739794 Functional Loss - WFIKKN2 ENSG00000173714 CDS Human protein_coding chr17:48918254 chr17:48918254 synonymous SNV . 0 21 hm5C_associated_SNPs_49864 0 0 0 0 0 exosome 0.500231643921093 0 0.5892546 0.000463287842185967 hm5C_site_5184 DeepMRMD:0.5892546;iRNA_m5C:0.000463287842185967 5185 chr2 9572738 9572738 1 + C T STAD 9572738 + 9572718 9572758 41 TCATGAAGTTAAGGAAGTTGCGGGAATCAAGTTTTGGTGTT TCATGAAGTTAAGGAAGTTGTGGGAATCAAGTTTTGGTGTT Direct Loss 0.94909350776231 0 0.85526687 0 prediction 0.89818701552462 Functional Loss - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9572738 chr2:9572738 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_49865 0 0 1 0 2 Nucleus 0.500231640403421 0 0.71053374 0.000463280806842326 hm5C_site_5185 DeepMRMD:0.71053374;iRNA_m5C:0.000463280806842326 5186 chr1 35260541 35260541 1 + C T UCEC 35260541 + 35260521 35260561 41 TCAGCCGGGGGATGAGGGCACGGCAAGGCCAAGACGCACCC TCAGCCGGGGGATGAGGGCATGGCAAGGCCAAGACGCACCC Direct Loss 0.949092476281612 0 0.5467011 0 prediction 0.898184952563224 Functional Loss - GJA4 ENSG00000187513 CDS Human protein_coding chr1:35260541 chr1:35260541 nonsynonymous SNV 0.009 3 21 hm5C_associated_SNPs_49866 0 0 0 0 0 cytosol 0.500231643921092 0 0.0934022000000001 0.000463287842184856 hm5C_site_5186 DeepMRMD:0.0934022000000001;iRNA_m5C:0.000463287842184856 5187 chr11 113860342 113860342 1 + C T UCEC 113860342 + 113860322 113860362 41 TCCGGCAATTCCTGGAAAAGCGGGATGAGATCCGAGAGGTG TCCGGCAATTCCTGGAAAAGTGGGATGAGATCCGAGAGGTG Direct Loss 0.949088548387839 0 0.8755554 0 prediction 0.898177096775678 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113860342 chr11:113860342 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49867 0 0 0 1 0 Cytosol 0.500231643920785 0 0.7511108 0.000463287841570903 hm5C_site_5187 DeepMRMD:0.7511108;iRNA_m5C:0.000463287841570903 5188 chr14 20296241 20296241 1 + C A GBM 20296241 + 20296221 20296261 41 TGATGACACTCCTGTGCTTTCTGGGGCTTCTGGCCTCCTAT TGATGACACTCCTGTGCTTTATGGGGCTTCTGGCCTCCTAT Direct Loss 0.94907151298316 0 0.8949795 0 prediction 0.89814302596632 Functional Loss - OR4N2 ENSG00000176294 CDS Human protein_coding chr14:20296241 chr14:20296241 nonsynonymous SNV 0.031 2 21 hm5C_associated_SNPs_49868 0 0 0 0 0 unknown 0.500231643921092 0 0.789959 0.000463287842184856 hm5C_site_5188 DeepMRMD:0.789959;iRNA_m5C:0.000463287842184856 5189 chr20 57876486 57876486 1 + C G BLCA 57876486 + 57876466 57876506 41 ATTCGTGCCTTGCTCCCAGTCTGGGGATGCTGGCAGGCGCG ATTCGTGCCTTGCTCCCAGTGTGGGGATGCTGGCAGGCGCG Direct Loss 0.949068844617644 0 0.7306457 0 prediction 0.898137689235287 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57876486 chr20:57876486 nonsynonymous SNV 0.903 2 21 hm5C_associated_SNPs_49869 0 0 0 0 1 exosome 0.500231796529022 0 0.4612914 0.000463593058043221 hm5C_site_5189 DeepMRMD:0.4612914;iRNA_m5C:0.000463593058043221 5190 chr20 23334997 23334997 1 + C T STAD 23334997 + 23334977 23335017 41 AGTTTGAGGGGAACAAACAACGGGACTTCAACCAGAACTTC AGTTTGAGGGGAACAAACAATGGGACTTCAACCAGAACTTC Direct Loss 0.949065662026752 0 0.4169255 0 prediction 0.898131324053504 Functional Loss - NXT1 ENSG00000132661 CDS Human protein_coding chr20:23334997 chr20:23334997 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49870 0 0 1 0 0 Ribosome 0.500231643920612 0 0 0.000463287841223181 hm5C_site_5190 DeepMRMD:0;iRNA_m5C:0.000463287841223181 5191 chr2 17997869 17997869 1 + C G BLCA 17997869 + 17997849 17997889 41 GGCCTGCTGTCTTCCTGGGACTGGAAGGACAGGGCAGGGCC GGCCTGCTGTCTTCCTGGGAGTGGAAGGACAGGGCAGGGCC Direct Loss 0.949055871722712 0 0.3515455 0 prediction 0.898111743445424 Functional Loss - MSGN1 ENSG00000151379 CDS Human protein_coding chr2:17997869 chr2:17997869 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_49871 0 0 0 0 0 exosome 0.500231643920874 0 0 0.000463287841748761 hm5C_site_5191 DeepMRMD:0;iRNA_m5C:0.000463287841748761 5192 chr11 62435741 62435741 1 + C G rs139618154 62435741 + 62435721 62435761 41 GCGGGCAGATTGCCTGAGCTCAGGAGTTTGAGACCAGCCTG GCGGGCAGATTGCCTGAGCTGAGGAGTTTGAGACCAGCCTG Direct Loss 0.949054553194448 0 0.91922486 0 prediction 0.898109106388896 Functional Loss - LBHD1 ENSG00000162194 intronic Human protein_coding chr11:62435741 chr11:62435741 . . 0 21 hm5C_associated_SNPs_49872 0 0 0 0 0 Ribosome 0.500231643921078 0 0.83844972 0.000463287842156879 hm5C_site_5192 DeepMRMD:0.83844972;iRNA_m5C:0.000463287842156879 5193 chr9 126774279 126774279 1 + C A rs185294494 126774279 + 126774259 126774299 41 TGCGCCCCGGGCGCTGAAGCCGGGCGGGCGATGCCCGCGGC TGCGCCCCGGGCGCTGAAGCAGGGCGGGCGATGCCCGCGGC Direct Loss 0.949048392637961 0 0.92472684 0 prediction 0.898096785275923 Functional Loss - LHX2 ENSG00000106689 UTR5 Human protein_coding chr9:126774279 chr9:126774279 . . 0 21 hm5C_associated_SNPs_49873 0 0 0 0 0 Cytosol 0.500231643921092 0 0.84945368 0.000463287842184856 hm5C_site_5193 DeepMRMD:0.84945368;iRNA_m5C:0.000463287842184856 5194 chr19 13080516 13080516 1 + C A BLCA 13080516 + 13080496 13080536 41 ACTCTTCTGTGCCTGCTTAGCGGGGCCCTGCCTACAGGCTC ACTCTTCTGTGCCTGCTTAGAGGGGCCCTGCCTACAGGCTC Direct Loss 0.949033020269728 0 0.9336051 0 prediction 0.898066040539455 Functional Loss - DAND5 ENSG00000179284 CDS Human protein_coding chr19:13080516 chr19:13080516 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_49874 0 0 0 0 0 Nucleus 0.500231643491343 0 0.8672102 0.000463286982686384 hm5C_site_5194 DeepMRMD:0.8672102;iRNA_m5C:0.000463286982686384 5195 chr2 131519767 131519767 1 + C T SKCM 131519767 + 131519747 131519787 41 AGGCCCCTGGTCAGTCCTTCCAGGAGGGCAACAGAGGCCCC AGGCCCCTGGTCAGTCCTTCTAGGAGGGCAACAGAGGCCCC Direct Loss 0.949011952446237 0 0.88668954 0 prediction 0.898023904892474 Functional Loss - AMER3 ENSG00000178171 CDS Human protein_coding chr2:131519767 chr2:131519767 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49875 0 0 0 0 0 Nucleus 0.500231643921093 0 0.77337908 0.000463287842185078 hm5C_site_5195 DeepMRMD:0.77337908;iRNA_m5C:0.000463287842185078 5196 chr20 30408136 30408136 1 + C T rs121908107 30408136 + 30408116 30408156 41 TGACAGGGGCGGGGGGCCCGCGGAGGGCAGTGCTGGGCCCC TGACAGGGGCGGGGGGCCCGTGGAGGGCAGTGCTGGGCCCC Direct Loss 0.948997179425158 0 0.91301316 0 prediction 0.897994358850317 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30408136 chr20:30408136 nonsynonymous SNV 0.523 1 21 hm5C_associated_SNPs_49876 1 0 0 0 0 exosome 0.500231643921092 0 0.82602632 0.000463287842184856 hm5C_site_5196 DeepMRMD:0.82602632;iRNA_m5C:0.000463287842184856 Cardiomyopathy, hypertrophic, midventricular, digenic Cardiomyopathy, hypertrophic, midventricular, digenic 5197 chr22 20760166 20760166 1 + C T UCEC 20760166 + 20760146 20760186 41 GCTTACAAGTGCGATGAATGCGGCAAGGCCTTCACCTGGAG GCTTACAAGTGCGATGAATGTGGCAAGGCCTTCACCTGGAG Direct Loss 0.948990006299314 0 0.6800429 0 prediction 0.897980012598628 Functional Loss - ZNF74 ENSG00000185252 CDS Human protein_coding chr22:20760166 chr22:20760166 synonymous SNV . 0 21 hm5C_associated_SNPs_49877 0 0 1 0 0 Cytosol 0.500231643921211 0 0.3600858 0.000463287842421112 hm5C_site_5197 DeepMRMD:0.3600858;iRNA_m5C:0.000463287842421112 5198 chr1 158813842 158813842 1 + C A LUAD 158813842 + 158813822 158813862 41 TCCCTCAGGAGCCAGCACATCTGCAGCTGTGGATCATCCCC TCCCTCAGGAGCCAGCACATATGCAGCTGTGGATCATCCCC Direct Loss 0.94897935202356 0 0.33849877 0 prediction 0.89795870404712 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813842 chr1:158813842 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_49878 0 0 0 0 2 exosome 0.500231643352273 0 0 0.000463286704545984 hm5C_site_5198 DeepMRMD:0;iRNA_m5C:0.000463286704545984 5199 chr11 6412941 6412941 1 + C T STAD 6412941 + 6412921 6412961 41 TGCACTGGGATCATGACTACCTGGAGGGCACGGACCCTGAC TGCACTGGGATCATGACTACTTGGAGGGCACGGACCCTGAC Direct Loss 0.948977265184838 0 0.4139989 0 prediction 0.897954530369677 Functional Loss - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6412941 chr11:6412941 synonymous SNV . 0 21 hm5C_associated_SNPs_49879 0 0 1 0 0 Endoplasmic reticulum 0.500240099664074 0 0 0.000480199328148911 hm5C_site_5199 DeepMRMD:0;iRNA_m5C:0.000480199328148911 5200 chr11 6629665 6629665 1 + C T rs1043388 6629665 + 6629645 6629685 41 ATCAATGCAGTGAATGAACACGGGAATGTGCCCCTGCACTA ATCAATGCAGTGAATGAACATGGGAATGTGCCCCTGCACTA Direct Loss 0.948971537724867 0 0.91267157 0 prediction 0.897943075449734 Functional Loss - ILK ENSG00000166333 CDS Human protein_coding chr11:6629665 chr11:6629665 synonymous SNV . 0 21 hm5C_associated_SNPs_49880 1 0 1 0 2 Endoplasmic reticulum 0.500231643921093 0 0.82534314 0.000463287842186189 hm5C_site_5200 DeepMRMD:0.82534314;iRNA_m5C:0.000463287842186189 not specified not specified 5201 chr14 24108424 24108424 1 + C G rs146690475 24108424 + 24108404 24108444 41 GCCCGACGTCTGGCCCGGGACGGGGCCCACGTGGTCATCAG GCCCGACGTCTGGCCCGGGAGGGGGCCCACGTGGTCATCAG Direct Loss 0.948969344161553 0 0.47925717 0 prediction 0.897938688323107 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108424 chr14:24108424 nonsynonymous SNV 0.017 2 21 hm5C_associated_SNPs_49881 0 0 1 0 1 Ribosome 0.500231645487913 0 0 0.000463290975826203 hm5C_site_5201 DeepMRMD:0;iRNA_m5C:0.000463290975826203 5202 chr11 7111257 7111257 1 + C T ESCA 7111257 + 7111237 7111277 41 CGGGGGACACCGCCATCTTACGGAGGAGGAGGCCGCTACGA CGGGGGACACCGCCATCTTATGGAGGAGGAGGCCGCTACGA Direct Loss 0.948967763826259 0 0.9373034 0 prediction 0.897935527652519 Functional Loss - RBMXL2 ENSG00000170748 CDS Human protein_coding chr11:7111257 chr11:7111257 synonymous SNV . 0 21 hm5C_associated_SNPs_49882 0 0 0 0 0 exosome 0.500231406349655 0 0.8746068 0.000462812699309589 hm5C_site_5202 DeepMRMD:0.8746068;iRNA_m5C:0.000462812699309589 5203 chr1 151020753 151020753 1 + C A LUAD 151020753 + 151020733 151020773 41 CGAGGTTTATAGCCAATAGTCAGGAGCCTGAAATCAGGCTG CGAGGTTTATAGCCAATAGTAAGGAGCCTGAAATCAGGCTG Direct Loss 0.948965355250621 0 0.925551 0 prediction 0.897930710501242 Functional Loss - C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020753 chr1:151020753 nonsynonymous SNV 0.539 1 21 hm5C_associated_SNPs_49883 0 0 0 0 0 Cytosol 0.50023164392109 0 0.851102 0.000463287842180193 hm5C_site_5203 DeepMRMD:0.851102;iRNA_m5C:0.000463287842180193 5204 chr11 34144097 34144097 1 + C T LUSC 34144097 + 34144077 34144117 41 TGCTCGAGGACGGGGAAAATCTGCAGCCCTGGGATTGGCGA TGCTCGAGGACGGGGAAAATTTGCAGCCCTGGGATTGGCGA Direct Loss 0.948957745516485 0 0.48639497 0 prediction 0.897915491032971 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34144097 chr11:34144097 nonsynonymous SNV 0.971 4 21 hm5C_associated_SNPs_49884 0 0 1 0 2 chromatin 0.500231644371373 0 0 0.000463288742745593 hm5C_site_5204 DeepMRMD:0;iRNA_m5C:0.000463288742745593 5205 chr9 77257416 77257416 1 + C T UCEC 77257416 + 77257396 77257436 41 AGCAGCGGCTGCAGGAACAGCGGCAGCAGCAGAGTGGGGAG AGCAGCGGCTGCAGGAACAGTGGCAGCAGCAGAGTGGGGAG Direct Loss 0.94895336376144 0 0.78513134 0 prediction 0.89790672752288 Functional Loss - RORB ENSG00000198963 CDS Human protein_coding chr9:77257416 chr9:77257416 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49885 0 0 0 0 1 exosome 0.500231643918122 0 0.57026268 0.000463287836244053 hm5C_site_5205 DeepMRMD:0.57026268;iRNA_m5C:0.000463287836244053 5206 chr4 187113099 187113099 1 + C T rs574516881 187113099 + 187113079 187113119 41 GCAGAGGGTGGCGAGCTACGCGCGGAAATGGCAGCAGATGC GCAGAGGGTGGCGAGCTACGTGCGGAAATGGCAGCAGATGC Direct Loss 0.948948443483517 0 0.53178066 0 prediction 0.897896886967034 Functional Loss - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187113099 chr4:187113099 nonsynonymous SNV 0.017 0 21 hm5C_associated_SNPs_49886 0 0 1 0 1 Nucleus 0.500231643920154 0 0.06356132 0.000463287840308135 hm5C_site_5206 DeepMRMD:0.06356132;iRNA_m5C:0.000463287840308135 5207 chr11 46726807 46726807 1 + C A SKCM 46726807 + 46726787 46726827 41 GGGCATTTGCGGCTCCACACCGGGGAGCGTCCTTACCGCTG GGGCATTTGCGGCTCCACACAGGGGAGCGTCCTTACCGCTG Direct Loss 0.948947994849329 0 0.9327817 0 prediction 0.897895989698659 Functional Loss - ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46726807 chr11:46726807 synonymous SNV . 0 21 hm5C_associated_SNPs_49887 0 0 1 0 0 cytosol 0.500231643918995 0 0.8655634 0.000463287837990878 hm5C_site_5207 DeepMRMD:0.8655634;iRNA_m5C:0.000463287837990878 5208 chr7 1026794 1026794 1 + C A LIHC 1026794 + 1026774 1026814 41 CCAACGCGGTGGCCTGCACCCTGGACATGGTCATGGCCGGG CCAACGCGGTGGCCTGCACCATGGACATGGTCATGGCCGGG Direct Loss 0.948938581911161 0 0.32931858 0 prediction 0.897877163822321 Functional Loss - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1026794 chr7:1026794 nonsynonymous SNV 0.695 0 21 hm5C_associated_SNPs_49888 0 0 1 0 1 nucleus 0.500212920926257 0 0 0.00042584185251382 hm5C_site_5208 DeepMRMD:0;iRNA_m5C:0.00042584185251382 5209 chr1 1334993 1334993 1 + C A rs185071634 1334993 + 1334973 1335013 41 GCCTGCCTGTGCGCCCCGAGCGGGGCTGGGACTCTTCCAAG GCCTGCCTGTGCGCCCCGAGAGGGGCTGGGACTCTTCCAAG Direct Loss 0.948937325177245 0 0.941604 0 prediction 0.897874650354489 Functional Loss - LOC148413 ENSG00000224870 CDS Human processed_transcript chr1:1334993 chr1:1334993 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49889 0 0 1 0 1 Ribosome 0.500231643921092 0 0.883208 0.000463287842184856 hm5C_site_5209 DeepMRMD:0.883208;iRNA_m5C:0.000463287842184856 5210 chr15 66161839 66161839 1 + C T rs577327021 66161839 + 66161819 66161859 41 CCAGTCCGGCAGTTGAAGCTCGGCGCTCGGGTTACCCCTGC CCAGTCCGGCAGTTGAAGCTTGGCGCTCGGGTTACCCCTGC Direct Loss 0.948929859883806 0 0.9199808 0 prediction 0.897859719767611 Functional Loss - RAB11A ENSG00000103769 UTR5 Human protein_coding chr15:66161839 chr15:66161839 . . 0 21 hm5C_associated_SNPs_49890 0 0 1 0 0 Ribosome 0.500231643921092 0 0.8399616 0.000463287842184856 hm5C_site_5210 DeepMRMD:0.8399616;iRNA_m5C:0.000463287842184856 5211 chr19 44564692 44564692 1 + C T UCEC 44564692 + 44564672 44564712 41 TTGCCCAGAGGAAGCTGTATCGAGATGTGATGCTGGAGAAC TTGCCCAGAGGAAGCTGTATTGAGATGTGATGCTGGAGAAC Direct Loss 0.948926845287328 0 0.9236363 0 prediction 0.897853690574656 Functional Loss - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44564692 chr19:44564692 stopgain 0.565 0 21 hm5C_associated_SNPs_49891 0 0 0 0 2 chromatin 0.500231638466884 0 0.8472726 0.000463276933767798 hm5C_site_5211 DeepMRMD:0.8472726;iRNA_m5C:0.000463276933767798 5212 chr2 45169339 45169339 1 + C T rs202214767 45169339 + 45169319 45169359 41 TCCATACTTCTGGCGAGTAGCGGCGGCGGGAACGGTGCGGG TCCATACTTCTGGCGAGTAGTGGCGGCGGGAACGGTGCGGG Direct Loss 0.94891724158642 0 0.9095098 0 prediction 0.89783448317284 Functional Loss - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45169339 chr2:45169339 synonymous SNV . 0 21 hm5C_associated_SNPs_49892 0 0 0 0 0 exosome 0.500231643920205 0 0.8190196 0.00046328784040961 hm5C_site_5212 DeepMRMD:0.8190196;iRNA_m5C:0.00046328784040961 5213 chr4 188923993 188923993 1 + C G LUAD 188923993 + 188923973 188924013 41 ACTGAAGAAACGGGCAAAGACAAGACACCAGAAAGGCCTGG ACTGAAGAAACGGGCAAAGAGAAGACACCAGAAAGGCCTGG Direct Loss 0.948903409541618 0 0.27033025 0 prediction 0.897806819083237 Functional Loss - ZFP42 ENSG00000179059 CDS Human protein_coding chr4:188923993 chr4:188923993 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_49893 0 0 0 0 0 Nucleus 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5213 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5214 chr5 157098676 157098676 1 + C A BRCA 157098676 + 157098656 157098696 41 GACCAGGGATCCTCCACGATCGGCGGGACCGCCGCCCAGGC GACCAGGGATCCTCCACGATAGGCGGGACCGCCGCCCAGGC Direct Loss 0.948895524377905 0 0.95285976 0 prediction 0.897791048755811 Functional Loss - C5orf52 ENSG00000187658 CDS Human protein_coding chr5:157098676 chr5:157098676 synonymous SNV . 0 21 hm5C_associated_SNPs_49894 0 0 0 0 0 unknown 0.500231634460821 0 0.90571952 0.00046326892164239 hm5C_site_5214 DeepMRMD:0.90571952;iRNA_m5C:0.00046326892164239 5215 chr14 36004727 36004727 1 + C T COAD 36004727 + 36004707 36004747 41 ACCAGTGGTGGCAGGGGATCCGAGATTTTCGTGTGCCCATA ACCAGTGGTGGCAGGGGATCTGAGATTTTCGTGTGCCCATA Direct Loss 0.948887172123681 0 0.8963959 0 prediction 0.897774344247361 Functional Loss - INSM2 ENSG00000168348 CDS Human protein_coding chr14:36004727 chr14:36004727 synonymous SNV . 0 21 hm5C_associated_SNPs_49895 0 0 0 0 0 unknown 0.500231637518976 0 0.7927918 0.000463275037951627 hm5C_site_5215 DeepMRMD:0.7927918;iRNA_m5C:0.000463275037951627 5216 chr10 86012696 86012696 1 + C A UCEC 86012696 + 86012676 86012716 41 TCTGGGCAGCTCTGCCCCTTCTGGGTTGGGGTCACTACGAC TCTGGGCAGCTCTGCCCCTTATGGGTTGGGGTCACTACGAC Direct Loss 0.948882253004712 0 0.7870755 0 prediction 0.897764506009423 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86012696 chr10:86012696 nonsynonymous SNV 0.809 0 21 hm5C_associated_SNPs_49896 0 0 0 0 2 unknown 0.500231643921092 0 0.574151 0.000463287842184856 hm5C_site_5216 DeepMRMD:0.574151;iRNA_m5C:0.000463287842184856 5217 chr19 11486676 11486676 1 + C G BLCA 11486676 + 11486656 11486696 41 CTCAGGCAAGGGTTCAAGCTCTGGAGGCCAGCCCTGAGCTT CTCAGGCAAGGGTTCAAGCTGTGGAGGCCAGCCCTGAGCTT Direct Loss 0.948880745170182 0 0.8476579 0 prediction 0.897761490340365 Functional Loss - SWSAP1 ENSG00000173928 CDS Human protein_coding chr19:11486676 chr19:11486676 nonsynonymous SNV 0.039 2 21 hm5C_associated_SNPs_49897 0 0 1 0 0 exosome 0.500231643921092 0 0.6953158 0.000463287842184856 hm5C_site_5217 DeepMRMD:0.6953158;iRNA_m5C:0.000463287842184856 5218 chr17 7345991 7345991 1 + C T rs4151131 7345991 + 7345971 7346011 41 TGTACGCCTCTGCTCTCTACCGCCAGCGTCGTTCTGGCCGG TGTACGCCTCTGCTCTCTACTGCCAGCGTCGTTCTGGCCGG Direct Loss 0.948880517138416 0 0.8590565 0 prediction 0.897761034276831 Functional Loss - FGF11 ENSG00000161958 CDS Human protein_coding chr17:7345991 chr17:7345991 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_49898 0 0 0 0 1 exosome 0.500231643919643 0 0.718113 0.00046328783928562 hm5C_site_5218 DeepMRMD:0.718113;iRNA_m5C:0.00046328783928562 5219 chr19 51645900 51645900 1 + C T SKCM 51645900 + 51645880 51645920 41 GGGCAGTGCAGGAGGAAACTCGGGACCGATTCCACCTCCTT GGGCAGTGCAGGAGGAAACTTGGGACCGATTCCACCTCCTT Direct Loss 0.948880451938495 0 0.93086743 0 prediction 0.89776090387699 Functional Loss - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51645900 chr19:51645900 nonsynonymous SNV 0.004 2 21 hm5C_associated_SNPs_49899 0 0 0 0 0 exosome 0.500231643921092 0 0.86173486 0.000463287842184856 hm5C_site_5219 DeepMRMD:0.86173486;iRNA_m5C:0.000463287842184856 5220 chr17 21825524 21825524 1 + C A rs184672012 21825524 + 21825504 21825544 41 ACGAAACCACAGGCAGAGTCCGGGGAAGCAGCGCGGCATCC ACGAAACCACAGGCAGAGTCAGGGGAAGCAGCGCGGCATCC Direct Loss 0.948878027040627 0 0.89446944 0 prediction 0.897756054081253 Functional Loss - FAM27E5 ENSG00000178130 ncRNA_exonic Human lincRNA chr17:21825524 chr17:21825524 . . 0 21 hm5C_associated_SNPs_49900 0 0 0 0 1 unknown 0.500231643905198 0 0.78893888 0.000463287810396285 hm5C_site_5220 DeepMRMD:0.78893888;iRNA_m5C:0.000463287810396285 5221 chr11 65414246 65414246 1 + C G rs568637009 65414246 + 65414226 65414266 41 AGCTGCAGGCAGCGGGCTCACTGGTGTGGGGAGTGCGCGCG AGCTGCAGGCAGCGGGCTCAGTGGTGTGGGGAGTGCGCGCG Direct Loss 0.948876792505386 0 0.5376476 0 prediction 0.897753585010772 Functional Loss - SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65414246 chr11:65414246 nonsynonymous SNV 0.491 2 21 hm5C_associated_SNPs_49901 0 0 1 0 0 Ribosome 0.500231643994971 0 0.0752952 0.000463287989941552 hm5C_site_5221 DeepMRMD:0.0752952;iRNA_m5C:0.000463287989941552 5222 chr1 153615768 153615768 1 + C T UCEC 153615768 + 153615748 153615788 41 GCTTAAGAAGAGGTGGTGTTCGAGGTCGTGGAGGTCCTGGG GCTTAAGAAGAGGTGGTGTTTGAGGTCGTGGAGGTCCTGGG Direct Loss 0.948871802428179 0 0.9098536 0 prediction 0.897743604856359 Functional Loss - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153615768 chr1:153615768 stopgain 1.000 1 21 hm5C_associated_SNPs_49902 0 0 1 0 2 Cytosol 0.500231643935705 0 0.8197072 0.000463287871410811 hm5C_site_5222 DeepMRMD:0.8197072;iRNA_m5C:0.000463287871410811 5223 chr1 205210708 205210708 1 + C T COAD 205210708 + 205210688 205210728 41 TCCACAGCCGCCGTCGGTCTCGGGAAAGGGAGCACCAGACG TCCACAGCCGCCGTCGGTCTTGGGAAAGGGAGCACCAGACG Direct Loss 0.948857062116185 0 0.9389821 0 prediction 0.89771412423237 Functional Loss - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205210708 chr1:205210708 nonsynonymous SNV 0.983 2 21 hm5C_associated_SNPs_49903 0 0 1 0 1 chromatin 0.500231643945448 0 0.8779642 0.000463287890895225 hm5C_site_5223 DeepMRMD:0.8779642;iRNA_m5C:0.000463287890895225 5224 chr9 22447523 22447523 1 + C T rs34336274 22447523 + 22447503 22447543 41 GCGCAGGAGGAGAGCGAAGCCCGGGGGCTACAGAGGCTCCT GCGCAGGAGGAGAGCGAAGCTCGGGGGCTACAGAGGCTCCT Direct Loss 0.948850827608796 0 0.91369784 0 prediction 0.897701655217591 Functional Loss - DMRTA1 ENSG00000176399 CDS Human protein_coding chr9:22447523 chr9:22447523 synonymous SNV . 0 21 hm5C_associated_SNPs_49904 0 0 0 0 0 exosome 0.500231643920938 0 0.82739568 0.000463287841875992 hm5C_site_5224 DeepMRMD:0.82739568;iRNA_m5C:0.000463287841875992 5225 chr2 198570720 198570720 1 + C G HNSC 198570720 + 198570700 198570740 41 GATTCGTTTCCTGTATCTCTCGAGAGCGGGCATCCAGTCTC GATTCGTTTCCTGTATCTCTGGAGAGCGGGCATCCAGTCTC Direct Loss 0.948843652861787 0 0.92999077 0 prediction 0.897687305723575 Functional Loss - MARS2 ENSG00000247626 CDS Human protein_coding chr2:198570720 chr2:198570720 synonymous SNV . 0 21 hm5C_associated_SNPs_49905 0 0 1 0 0 Ribosome 0.500231643931939 0 0.85998154 0.000463287863878614 hm5C_site_5225 DeepMRMD:0.85998154;iRNA_m5C:0.000463287863878614 5226 chr12 93772186 93772186 1 + C T UCEC 93772186 + 93772166 93772206 41 GCCTGTGCTTCCGGAGCGAGCAGGAGGACGAGGTAGGGCGC GCCTGTGCTTCCGGAGCGAGTAGGAGGACGAGGTAGGGCGC Direct Loss 0.94883318017026 0 0.93655246 0 prediction 0.89766636034052 Functional Loss - NUDT4 ENSG00000173598 CDS Human protein_coding chr12:93772186 chr12:93772186 stopgain 0.972 1 21 hm5C_associated_SNPs_49906 0 0 1 0 1 Ribosome 0.500231643921092 0 0.87310492 0.000463287842184856 hm5C_site_5226 DeepMRMD:0.87310492;iRNA_m5C:0.000463287842184856 5227 chr12 52700020 52700020 1 + C T PRAD 52700020 + 52700000 52700040 41 TCCAAGCTGGGCCTGGACATCGAGATCGCCACCTACAGGCG TCCAAGCTGGGCCTGGACATTGAGATCGCCACCTACAGGCG Direct Loss 0.948819245012817 0 0.86143684 0 prediction 0.897638490025633 Functional Loss - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52700020 chr12:52700020 synonymous SNV . 0 21 hm5C_associated_SNPs_49907 0 0 0 0 1 nucleus 0.500231643921092 0 0.72287368 0.000463287842184412 hm5C_site_5227 DeepMRMD:0.72287368;iRNA_m5C:0.000463287842184412 5228 chr19 35521630 35521630 1 + C T rs569134158 35521630 + 35521610 35521650 41 CTGCTGCGCCCGCGCGCTCCCGGGGACATTCTAACCGCCGC CTGCTGCGCCCGCGCGCTCCTGGGGACATTCTAACCGCCGC Direct Loss 0.948816203696925 0 0.9389587 0 prediction 0.89763240739385 Functional Loss - SCN1B ENSG00000105711 UTR5 Human protein_coding chr19:35521630 chr19:35521630 . . 0 21 hm5C_associated_SNPs_49908 3 0 0 0 0 exosome 0.500231639766467 0 0.8779174 0.000463279532933569 hm5C_site_5228 DeepMRMD:0.8779174;iRNA_m5C:0.000463279532933569 Generalized epilepsy with febrile seizures plus Generalized epilepsy with febrile seizures plus 5229 chr3 32927537 32927537 1 + C T UCEC 32927537 + 32927517 32927557 41 ATAAGAAAGCCCTGGAGGAACGCGAGTGTGAGCTGCTGTGG ATAAGAAAGCCCTGGAGGAATGCGAGTGTGAGCTGCTGTGG Direct Loss 0.948806019065522 0 0.39723027 0 prediction 0.897612038131044 Functional Loss - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32927537 chr3:32927537 nonsynonymous SNV 0.914 5 21 hm5C_associated_SNPs_49909 0 0 1 0 1 cytosol 0.500231644294855 0 0 0.000463288589710675 hm5C_site_5229 DeepMRMD:0;iRNA_m5C:0.000463288589710675 5230 chr16 74339301 74339301 1 + C T READ 74339301 + 74339281 74339321 41 AGGAGCTACCTGGAAAAAGTCGCCACAGGCAAGCTGCCCAT AGGAGCTACCTGGAAAAAGTTGCCACAGGCAAGCTGCCCAT Direct Loss 0.94880583158148 0 0.56090885 0 prediction 0.897611663162959 Functional Loss - PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74339301 chr16:74339301 synonymous SNV . 0 21 hm5C_associated_SNPs_49910 0 0 1 0 0 Ribosome 0.50023164391885 0 0.1218177 0.000463287837699333 hm5C_site_5230 DeepMRMD:0.1218177;iRNA_m5C:0.000463287837699333 5231 chr2 241808766 241808766 1 + C T PAAD 241808766 + 241808746 241808786 41 GGGCAGCGAGCCGTGGACATCGGGGAGCGCATAGGTAAGGG GGGCAGCGAGCCGTGGACATTGGGGAGCGCATAGGTAAGGG Direct Loss 0.948805454307986 0 0.8948411 0 prediction 0.897610908615972 Functional Loss - AGXT ENSG00000172482 CDS Human protein_coding chr2:241808766 chr2:241808766 synonymous SNV . 0 21 hm5C_associated_SNPs_49911 0 0 1 0 1 Cytosol 0.500231643921092 0 0.7896822 0.000463287842184856 hm5C_site_5231 DeepMRMD:0.7896822;iRNA_m5C:0.000463287842184856 5232 chr11 209885 209885 1 + C T UCEC 209885 + 209865 209905 41 GCTGACGCTGGGGGTGACTCCTGAAGGGAACCCCCCACCCA GCTGACGCTGGGGGTGACTCTTGAAGGGAACCCCCCACCCA Direct Loss 0.948792445265224 0 0.23090851 0 prediction 0.897584890530449 Functional Loss - RIC8A ENSG00000177963 CDS Human protein_coding chr11:209885 chr11:209885 nonsynonymous SNV 0.018 0 21 hm5C_associated_SNPs_49912 0 0 1 0 0 Ribosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5232 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5233 chr14 74825332 74825332 1 + C T SKCM 74825332 + 74825312 74825352 41 TGCAGGAGGGGGCCACAGCCCAGGGCCAGCCCCACAGTGGG TGCAGGAGGGGGCCACAGCCTAGGGCCAGCCCCACAGTGGG Direct Loss 0.94879065966771 0 0.90700006 0 prediction 0.897581319335421 Functional Loss - VRTN ENSG00000133980 CDS Human protein_coding chr14:74825332 chr14:74825332 stopgain 0.092 0 21 hm5C_associated_SNPs_49913 0 0 0 0 0 unknown 0.500231643921092 0 0.81400012 0.000463287842184856 hm5C_site_5233 DeepMRMD:0.81400012;iRNA_m5C:0.000463287842184856 5234 chrX 118370497 118370497 1 + C T KIRP 118370497 + 118370477 118370517 41 CCGGCGGCCAGCGGCGACAGCGACGACGACGAGCCGCCCCC CCGGCGGCCAGCGGCGACAGTGACGACGACGAGCCGCCCCC Direct Loss 0.948789466568735 0 0.5483464 0 prediction 0.89757893313747 Functional Loss - PGRMC1 ENSG00000101856 CDS Human protein_coding chrX:118370497 chrX:118370497 synonymous SNV . 0 21 hm5C_associated_SNPs_49914 0 0 1 0 0 Ribosome 0.500231643921092 0 0.0966928 0.000463287842184634 hm5C_site_5234 DeepMRMD:0.0966928;iRNA_m5C:0.000463287842184634 5235 chrX 153416342 153416342 1 + C G CESC 153416342 + 153416322 153416362 41 ACCGTCATCGCCAGCACTATCAGCATTGTGAACCAGGTCTC ACCGTCATCGCCAGCACTATGAGCATTGTGAACCAGGTCTC Direct Loss 0.948784349180039 0 0.8520894 0 prediction 0.897568698360078 Functional Loss - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153416342 chrX:153416342 nonsynonymous SNV 0.840 4 21 hm5C_associated_SNPs_49915 0 0 0 0 1 unknown 0.500231643922136 0 0.7041788 0.000463287844271187 hm5C_site_5235 DeepMRMD:0.7041788;iRNA_m5C:0.000463287844271187 5236 chr22 18210164 18210164 1 + C G LUAD 18210164 + 18210144 18210184 41 GCCGCCGTCTGAGGGCAAGTCTAGACTGTCCCCCGCCGGTG GCCGCCGTCTGAGGGCAAGTGTAGACTGTCCCCCGCCGGTG Direct Loss 0.948782135888038 0 0.58095306 0 prediction 0.897564271776076 Functional Loss - BCL2L13 ENSG00000099968 CDS Human protein_coding chr22:18210164 chr22:18210164 nonsynonymous SNV 0.013 1 21 hm5C_associated_SNPs_49916 0 0 1 0 0 Cytosol 0.500231643921092 0 0.16190612 0.000463287842184856 hm5C_site_5236 DeepMRMD:0.16190612;iRNA_m5C:0.000463287842184856 5237 chr1 69495 69495 1 + C T STAD 69495 + 69475 69515 41 ATGTGTGGCAACGCATGTGTCGGCATTATGGCTGTCACATG ATGTGTGGCAACGCATGTGTTGGCATTATGGCTGTCACATG Direct Loss 0.94877463127506 0 0.70464176 0 prediction 0.89754926255012 Functional Loss - OR4F5 ENSG00000186092 CDS Human protein_coding chr1:69495 chr1:69495 synonymous SNV . 0 21 hm5C_associated_SNPs_49917 0 0 0 0 0 unknown 0.500231425888697 0 0.40928352 0.000462851777394802 hm5C_site_5237 DeepMRMD:0.40928352;iRNA_m5C:0.000462851777394802 5238 chr2 171573901 171573901 1 + C T STAD 171573901 + 171573881 171573921 41 CGGGGTTAAGCGGGAGGACGCGCGGGACCTGTGAGCCCTCC CGGGGTTAAGCGGGAGGACGTGCGGGACCTGTGAGCCCTCC Direct Loss 0.948771252274765 0 0.90757704 0 prediction 0.897542504549529 Functional Loss - SP5 ENSG00000204335 CDS Human protein_coding chr2:171573901 chr2:171573901 nonsynonymous SNV 0.752 0 21 hm5C_associated_SNPs_49918 0 0 1 0 0 insoluble cytoplasm 0.500231643921091 0 0.81515408 0.000463287842182636 hm5C_site_5238 DeepMRMD:0.81515408;iRNA_m5C:0.000463287842182636 5239 chr19 35769888 35769888 1 + C T UCEC 35769888 + 35769868 35769908 41 CCAAGGCCTGCGATTACATCCGGGAGTTGCGCCAGACCAAC CCAAGGCCTGCGATTACATCTGGGAGTTGCGCCAGACCAAC Direct Loss 0.948767804390238 0 0.8992215 0 prediction 0.897535608780476 Functional Loss - USF2 ENSG00000105698 CDS Human protein_coding chr19:35769888 chr19:35769888 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49919 0 0 1 0 2 Cytosol 0.500231655462526 0 0.798443 0.000463310925051141 hm5C_site_5239 DeepMRMD:0.798443;iRNA_m5C:0.000463310925051141 5240 chr11 381866 381866 1 + C T rs563084177 381866 + 381846 381886 41 CTGGGCTTTGAGCTCGGTCCCGAGAGACCCGGCAGGGCTGG CTGGGCTTTGAGCTCGGTCCTGAGAGACCCGGCAGGGCTGG Direct Loss 0.94875558694529 0 0.9263159 0 prediction 0.897511173890581 Functional Loss - B4GALNT4 ENSG00000182272 UTR3 Human protein_coding chr11:381866 chr11:381866 . . 0 21 hm5C_associated_SNPs_49920 0 0 1 0 0 chromatin 0.500231670708564 0 0.8526318 0.000463341417127783 hm5C_site_5240 DeepMRMD:0.8526318;iRNA_m5C:0.000463341417127783 5241 chr3 49449953 49449953 1 + C A LUSC 49449953 + 49449933 49449973 41 TCTTGCGGGAGTGGGAGGCGCAGGACATGCGCGTGACCCTC TCTTGCGGGAGTGGGAGGCGAAGGACATGCGCGTGACCCTC Direct Loss 0.948746467243891 0 0.88987124 0 prediction 0.897492934487782 Functional Loss - TCTA ENSG00000145022 CDS Human protein_coding chr3:49449953 chr3:49449953 nonsynonymous SNV 0.956 2 21 hm5C_associated_SNPs_49921 0 0 1 0 0 Ribosome 0.500231644052182 0 0.77974248 0.00046328810436469 hm5C_site_5241 DeepMRMD:0.77974248;iRNA_m5C:0.00046328810436469 5242 chr8 146279641 146279641 1 + C G rs148456256 146279641 + 146279621 146279661 41 ACTTCTGTTGTCAGAGAACCCTGGAGTTGGTCTGTCCCTGG ACTTCTGTTGTCAGAGAACCGTGGAGTTGGTCTGTCCCTGG Direct Loss 0.948738717204814 0 0.8379201 0 prediction 0.897477434409629 Functional Loss - C8orf33 ENSG00000182307 UTR3 Human protein_coding chr8:146279641 chr8:146279641 . . 0 21 hm5C_associated_SNPs_49922 0 0 1 0 0 Ribosome 0.500231675775908 0 0.6758402 0.000463351551815983 hm5C_site_5242 DeepMRMD:0.6758402;iRNA_m5C:0.000463351551815983 5243 chr3 99513173 99513173 1 + C A COAD 99513173 + 99513153 99513193 41 TTTGCCAGGTCATGGGATACCTGGAATTAAAGGAAAACCAG TTTGCCAGGTCATGGGATACATGGAATTAAAGGAAAACCAG Direct Loss 0.948729029946452 0 0.50402904 0 prediction 0.897458059892903 Functional Loss - COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99513173 chr3:99513173 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49923 0 0 0 0 1 Cytosol 0.500231645645463 0 0.00805808000000008 0.000463291290925039 hm5C_site_5243 DeepMRMD:0.00805808000000008;iRNA_m5C:0.000463291290925039 5244 chr20 25176399 25176399 1 + C T rs73339013 25176399 + 25176379 25176419 41 CGTATCCCGCGGGTGGAGGCCGGGGTGGCGCCGGCCGGGGC CGTATCCCGCGGGTGGAGGCTGGGGTGGCGCCGGCCGGGGC Direct Loss 0.948725045145147 0 0.92497647 0 prediction 0.897450090290294 Functional Loss - LOC101926889 ENSG00000197586 CDS Human protein_coding chr20:25176399 chr20:25176399 unknown . 0 21 hm5C_associated_SNPs_49924 0 0 1 0 0 unknown 0.500231643921092 0 0.84995294 0.000463287842184856 hm5C_site_5244 DeepMRMD:0.84995294;iRNA_m5C:0.000463287842184856 5245 chr9 116054450 116054450 1 + C T rs115864367 116054450 + 116054430 116054470 41 GTTGCAGTGAGCCGAGATTGCGCCATTGCACTCTAGCCTGT GTTGCAGTGAGCCGAGATTGTGCCATTGCACTCTAGCCTGT Direct Loss 0.948716416714521 0 0.17026183 0 prediction 0.897432833429043 Functional Loss - PRPF4 ENSG00000136875 UTR3 Human protein_coding chr9:116054450 chr9:116054450 . . 0 21 hm5C_associated_SNPs_49925 0 0 0 0 0 Ribosome 0.500221973538866 0 0 0.000443947077732432 hm5C_site_5245 DeepMRMD:0;iRNA_m5C:0.000443947077732432 Anthropometric traits 5246 chr19 50168871 50168871 1 + G A rs2304206 50168871 - 50168851 50168891 41 GTAGGTAACGCGGAAGAGCCCGGGAGAGCGTTGGTGGCGTC GTAGGTAACGCGGAAGAGCCTGGGAGAGCGTTGGTGGCGTC Direct Loss 0.948716202376554 0 0.8649748 0 prediction 0.897432404753108 Functional Loss - BCL2L12 ENSG00000126453;ENSG00000126456 UTR5 Human other chr19:50168871 chr19:50168871 . . 0 21 hm5C_associated_SNPs_49926 0 1 1 0 0 Ribosome 0.500231634624947 0 0.7299496 0.000463269249894926 hm5C_site_5246 DeepMRMD:0.7299496;iRNA_m5C:0.000463269249894926 5247 chr20 23017190 23017190 1 + C A LUSC 23017190 + 23017170 23017210 41 TCTCAAGAGCAAAGGTGGGGCAGGGTGCATGTGCCCCCCAC TCTCAAGAGCAAAGGTGGGGAAGGGTGCATGTGCCCCCCAC Direct Loss 0.948715786820848 0 0.89457464 0 prediction 0.897431573641697 Functional Loss - SSTR4 ENSG00000132671 CDS Human protein_coding chr20:23017190 chr20:23017190 nonsynonymous SNV 0.011 0 21 hm5C_associated_SNPs_49927 0 0 0 0 0 exosome 0.500231643921092 0 0.78914928 0.000463287842184856 hm5C_site_5247 DeepMRMD:0.78914928;iRNA_m5C:0.000463287842184856 5248 chr9 38396046 38396046 1 + C T LGG 38396046 + 38396026 38396066 41 GCCGGATGGATGCCTCTGAGCGGGGCCGGCTGCTGAACCGC GCCGGATGGATGCCTCTGAGTGGGGCCGGCTGCTGAACCGC Direct Loss 0.948698563997494 0 0.91092753 0 prediction 0.897397127994987 Functional Loss - ALDH1B1 ENSG00000137124 CDS Human protein_coding chr9:38396046 chr9:38396046 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_49928 0 0 1 0 0 Cytosol 0.500231646999969 0 0.82185506 0.000463293999938497 hm5C_site_5248 DeepMRMD:0.82185506;iRNA_m5C:0.000463293999938497 5249 chrX 585258 585258 1 + C A rs113313554 585258 + 585238 585278 41 CCGAGTCCGCACAGGGTTTGCGGGAGGTGGTGACCGCGCTG CCGAGTCCGCACAGGGTTTGAGGGAGGTGGTGACCGCGCTG Direct Loss 0.948698328563921 0 0.9102515 0 prediction 0.897396657127843 Functional Loss - SHOX ENSG00000185960 UTR5 Human protein_coding chrX:585258 chrX:585258 . . 0 21 hm5C_associated_SNPs_49929 1 0 0 0 1 Nucleus 0.500231643903995 0 0.820503 0.000463287807989321 hm5C_site_5249 DeepMRMD:0.820503;iRNA_m5C:0.000463287807989321 Short stature, idiopathic, X-linked Short stature, idiopathic, X-linked 5250 chr16 31230742 31230742 1 + C G BLCA 31230742 + 31230722 31230762 41 AGGCAGGGGTCGCCTTGCGCCGGGAGCTGGGGAGCCTGAAC AGGCAGGGGTCGCCTTGCGCGGGGAGCTGGGGAGCCTGAAC Direct Loss 0.9486857343485 0 0.90655774 0 prediction 0.897371468697 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31230742 chr16:31230742 nonsynonymous SNV 0.337 0 21 hm5C_associated_SNPs_49930 0 0 0 0 1 exosome 0.500231643812135 0 0.81311548 0.000463287624269615 hm5C_site_5250 DeepMRMD:0.81311548;iRNA_m5C:0.000463287624269615 5251 chr1 156595103 156595103 1 + C G rs549528369 156595103 + 156595083 156595123 41 CTGCGGGGGGCTCCCGGATCCCGGAGTGCGCAGTTTCGGCT CTGCGGGGGGCTCCCGGATCGCGGAGTGCGCAGTTTCGGCT Direct Loss 0.948685063548069 0 0.92358536 0 prediction 0.897370127096139 Functional Loss - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156595103 chr1:156595103 nonsynonymous SNV 0.926 4 21 hm5C_associated_SNPs_49931 0 0 1 0 0 exosome 0.500231696829307 0 0.84717072 0.000463393658614919 hm5C_site_5251 DeepMRMD:0.84717072;iRNA_m5C:0.000463393658614919 5252 chr17 76167020 76167020 1 + C T rs114913091 76167020 + 76167000 76167040 41 TGCCGCTATGGCAGTGCCATCGGGGTGCTGGCCTTCCTGGC TGCCGCTATGGCAGTGCCATTGGGGTGCTGGCCTTCCTGGC Direct Loss 0.948672065882596 0 0.9516876 0 prediction 0.897344131765192 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167020 chr17:76167020 synonymous SNV . 0 21 hm5C_associated_SNPs_49932 0 0 1 0 0 Ribosome 0.500231643919982 0 0.9033752 0.00046328783996441 hm5C_site_5252 DeepMRMD:0.9033752;iRNA_m5C:0.00046328783996441 5253 chr22 39917047 39917047 1 + C T rs117186267 39917047 + 39917027 39917067 41 CCACGAAACGTGGCAGGAACCAAGATGGCGGCGGCAGGGCG CCACGAAACGTGGCAGGAACTAAGATGGCGGCGGCAGGGCG Direct Loss 0.948657820070213 0 0.34561706 0 prediction 0.897315640140425 Functional Loss - ATF4 ENSG00000128272 UTR5 Human protein_coding chr22:39917047 chr22:39917047 . . 0 21 hm5C_associated_SNPs_49933 0 0 0 0 0 Ribosome 0.500231628339573 0 0 0.000463256679145152 hm5C_site_5253 DeepMRMD:0;iRNA_m5C:0.000463256679145152 5254 chr6 159086542 159086542 1 + C T SKCM 159086542 + 159086522 159086562 41 TGCTGGGGTTCCTGCTGCACCGGGGCGCCGTGTGCCGGGGC TGCTGGGGTTCCTGCTGCACTGGGGCGCCGTGTGCCGGGGC Direct Loss 0.948654696488692 0 0.92821646 0 prediction 0.897309392977384 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086542 chr6:159086542 nonsynonymous SNV 0.879 4 21 hm5C_associated_SNPs_49934 0 0 0 0 0 exosome 0.500231643921092 0 0.85643292 0.000463287842184856 hm5C_site_5254 DeepMRMD:0.85643292;iRNA_m5C:0.000463287842184856 5255 chr1 156703283 156703283 1 + C G LUAD 156703283 + 156703263 156703303 41 ACCAGGAGCTTCTGCAGGCTCTGGAGAAAGAGGAGAAGAGG ACCAGGAGCTTCTGCAGGCTGTGGAGAAAGAGGAGAAGAGG Direct Loss 0.948651320705179 0 0.71767116 0 prediction 0.897302641410357 Functional Loss - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156703283 chr1:156703283 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_49935 0 0 1 0 1 chromatin 0.500231643921092 0 0.43534232 0.000463287842184856 hm5C_site_5255 DeepMRMD:0.43534232;iRNA_m5C:0.000463287842184856 5256 chr19 13873647 13873647 1 + C T COAD 13873647 + 13873627 13873667 41 CACCCCCAAGTCTGGGGAACCGCGGGTACCAGAGGAGGCTG CACCCCCAAGTCTGGGGAACTGCGGGTACCAGAGGAGGCTG Direct Loss 0.948642684736743 0 0.91482246 0 prediction 0.897285369473485 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13873647 chr19:13873647 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_49936 0 0 0 0 0 Cytosol 0.500229214451518 0 0.82964492 0.00045842890303649 hm5C_site_5256 DeepMRMD:0.82964492;iRNA_m5C:0.00045842890303649 5257 chr8 86354340 86354340 1 + C T COAD 86354340 + 86354320 86354360 41 TCCCTGGACCCTACCGACTTCGCCAGTTTCATCTTCACTGG TCCCTGGACCCTACCGACTTTGCCAGTTTCATCTTCACTGG Direct Loss 0.948640313581265 0 0.066521645 0 prediction 0.89728062716253 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354340 chr8:86354340 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_49937 0 0 0 0 3 chromatin 0.500231643922043 0 0 0.000463287844086446 hm5C_site_5257 DeepMRMD:0;iRNA_m5C:0.000463287844086446 5258 chr7 48147076 48147076 1 + C T rs75887102 48147076 + 48147056 48147096 41 ATGGAGTCCTCGGTGTTTGCCGCCATGTGCAGCGCCTGCGG ATGGAGTCCTCGGTGTTTGCTGCCATGTGCAGCGCCTGCGG Direct Loss 0.948637683209812 0 0.81884444 0 prediction 0.897275366419624 Functional Loss - UPP1 ENSG00000183696 CDS Human protein_coding chr7:48147076 chr7:48147076 synonymous SNV . 0 21 hm5C_associated_SNPs_49938 0 0 1 0 1 Ribosome 0.500655181819921 0 0.63768888 0.00131036363984283 hm5C_site_5258 DeepMRMD:0.63768888;iRNA_m5C:0.00131036363984283 5259 chr22 38211679 38211679 1 + C A HNSC 38211679 + 38211659 38211699 41 CTTCTTCTCAGGGGGCTACACGACAGGGCCTGGGCCCCTGG CTTCTTCTCAGGGGGCTACAAGACAGGGCCTGGGCCCCTGG Direct Loss 0.948631880055966 0 0.2165058 0 prediction 0.897263760111932 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38211679 chr22:38211679 nonsynonymous SNV 0.907 5 21 hm5C_associated_SNPs_49939 0 0 0 0 1 Cytosol 0.500231643921017 0 0 0.000463287842034754 hm5C_site_5259 DeepMRMD:0;iRNA_m5C:0.000463287842034754 5260 chr3 35770825 35770825 1 + C T OV 35770825 + 35770805 35770845 41 TTCCAGCAGTGCAGGCTCCTCAGGATCGCTGTCCCGCACCC TTCCAGCAGTGCAGGCTCCTTAGGATCGCTGTCCCGCACCC Direct Loss 0.948617888075427 0 0.84455633 0 prediction 0.897235776150855 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35770825 chr3:35770825 nonsynonymous SNV 0.986 4 21 hm5C_associated_SNPs_49940 0 0 0 0 1 Nucleus 0.500231643920627 0 0.68911266 0.000463287841253601 hm5C_site_5260 DeepMRMD:0.68911266;iRNA_m5C:0.000463287841253601 5261 chr10 104590593 104590593 1 + G A rs150171711 104590593 - 104590573 104590613 41 GGCTGCTGCAGAGGTTCGACCTGGAGGTGCCAGATGATGGG GGCTGCTGCAGAGGTTCGACTTGGAGGTGCCAGATGATGGG Direct Loss 0.948593894582229 0 0.3244505 0 prediction 0.897187789164458 Functional Loss - CYP17A1 ENSG00000148795 CDS Human protein_coding chr10:104590593 chr10:104590593 synonymous SNV . 0 21 hm5C_associated_SNPs_49941 0 0 0 0 0 exosome 0.500231645581513 0 0 0.000463291163025348 hm5C_site_5261 DeepMRMD:0;iRNA_m5C:0.000463291163025348 5262 chr17 45297350 45297350 1 + C T GBM 45297350 + 45297330 45297370 41 ACGGCCAGTGCGGGGATGTACTGCGGGCCCTGGGCCAGAAC ACGGCCAGTGCGGGGATGTATTGCGGGCCCTGGGCCAGAAC Direct Loss 0.948588910281515 0 0.46845698 0 prediction 0.897177820563029 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45297350 chr17:45297350 synonymous SNV . 0 21 hm5C_associated_SNPs_49942 0 0 1 0 1 Cytosol 0.500231645212662 0 0 0.000463290425323892 hm5C_site_5262 DeepMRMD:0;iRNA_m5C:0.000463290425323892 5263 chr11 76804839 76804839 1 + C T SKCM 76804839 + 76804819 76804859 41 CCTGCTCGTCACTTGCCTCCCGGGAGTCGCTGTGGCAAAAG CCTGCTCGTCACTTGCCTCCTGGGAGTCGCTGTGGCAAAAG Direct Loss 0.948577092175471 0 0.90972453 0 prediction 0.897154184350942 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76804839 chr11:76804839 nonsynonymous SNV 0.961 5 21 hm5C_associated_SNPs_49943 0 0 0 0 1 Endoplasmic reticulum 0.500231649237391 0 0.81944906 0.000463298474782325 hm5C_site_5263 DeepMRMD:0.81944906;iRNA_m5C:0.000463298474782325 5264 chr1 155154415 155154415 1 + C T SKCM 155154415 + 155154395 155154435 41 GCGAGCAGTACGGAGTGTTCCAGGGCTGCCCCTGCTGCTGG GCGAGCAGTACGGAGTGTTCTAGGGCTGCCCCTGCTGCTGG Direct Loss 0.948548606601024 0 0.9170717 0 prediction 0.897097213202048 Functional Loss - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155154415 chr1:155154415 nonsynonymous SNV 0.952 1 21 hm5C_associated_SNPs_49944 0 0 0 0 1 nucleolus 0.500231643920423 0 0.8341434 0.000463287840845705 hm5C_site_5264 DeepMRMD:0.8341434;iRNA_m5C:0.000463287840845705 5265 chr12 120427867 120427867 1 + C T UCEC 120427867 + 120427847 120427887 41 GAGCTGGCGCTGCTGGCGGCCGGGGAGCGGCCGTCCGACCC GAGCTGGCGCTGCTGGCGGCTGGGGAGCGGCCGTCCGACCC Direct Loss 0.948546707670566 0 0.9115044 0 prediction 0.897093415341132 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120427867 chr12:120427867 synonymous SNV . 0 21 hm5C_associated_SNPs_49945 0 0 1 0 0 chromatin 0.500231738684745 0 0.8230088 0.000463477369490262 hm5C_site_5265 DeepMRMD:0.8230088;iRNA_m5C:0.000463477369490262 5266 chr2 10282395 10282395 1 + C T rs141974256 10282395 + 10282375 10282415 41 TTCTAAGGGGATGAGAAGCTCGGGAAGGTCTGACCAGCCTT TTCTAAGGGGATGAGAAGCTTGGGAAGGTCTGACCAGCCTT Direct Loss 0.948543131603036 0 0.8823944 0 prediction 0.897086263206073 Functional Loss - C2orf48 ENSG00000163009 CDS Human lincRNA chr2:10282395 chr2:10282395 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49946 0 0 1 0 1 unknown 0.500231643921094 0 0.7647888 0.000463287842188631 hm5C_site_5266 DeepMRMD:0.7647888;iRNA_m5C:0.000463287842188631 5267 chrX 150349082 150349082 1 + C T OV 150349082 + 150349062 150349102 41 CCCGCGCCCGTGCCCATGCTCGCGACCAAGCTCGTGAACAA CCCGCGCCCGTGCCCATGCTTGCGACCAAGCTCGTGAACAA Direct Loss 0.948526476220066 0 0.4900282 0 prediction 0.897052952440131 Functional Loss - GPR50 ENSG00000102195 CDS Human protein_coding chrX:150349082 chrX:150349082 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49947 0 0 0 0 0 exosome 0.500231643906563 0 0 0.000463287813125435 hm5C_site_5267 DeepMRMD:0;iRNA_m5C:0.000463287813125435 5268 chrX 154255273 154255273 1 + C A SKCM 154255273 + 154255253 154255293 41 GCGACAACTGCGCGCCACTCCGCGGCCTACCGCGCAGATCC GCGACAACTGCGCGCCACTCAGCGGCCTACCGCGCAGATCC Direct Loss 0.948525363175425 0 0.91425 0 prediction 0.897050726350851 Functional Loss - FUNDC2 ENSG00000165775 CDS Human protein_coding chrX:154255273 chrX:154255273 synonymous SNV . 0 21 hm5C_associated_SNPs_49948 0 0 0 0 1 Ribosome 0.500231640946498 0 0.8285 0.000463281892996825 hm5C_site_5268 DeepMRMD:0.8285;iRNA_m5C:0.000463281892996825 5269 chr12 4705362 4705362 1 + C T SKCM 4705362 + 4705342 4705382 41 TATGAAGTTCTGGAGACAATCGGGAAGGGGTCCTTTGGACA TATGAAGTTCTGGAGACAATTGGGAAGGGGTCCTTTGGACA Direct Loss 0.948522735113962 0 0.91337264 0 prediction 0.897045470227925 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4705362 chr12:4705362 synonymous SNV . 0 21 hm5C_associated_SNPs_49949 0 0 0 0 2 Ribosome 0.500235614941938 0 0.82674528 0.000471229883875379 hm5C_site_5269 DeepMRMD:0.82674528;iRNA_m5C:0.000471229883875379 5270 chr19 58721386 58721386 1 + C T UCEC 58721386 + 58721366 58721406 41 GCCTCGAGGTCACTGCCCAGCAGGAGGAGAAGCAGGAGGAT GCCTCGAGGTCACTGCCCAGTAGGAGGAGAAGCAGGAGGAT Direct Loss 0.948511920371098 0 0.80942845 0 prediction 0.897023840742195 Functional Loss - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58721386 chr19:58721386 stopgain 0.002 0 21 hm5C_associated_SNPs_49950 0 0 1 0 2 chromatin 0.500231643921095 0 0.6188569 0.000463287842189075 hm5C_site_5270 DeepMRMD:0.6188569;iRNA_m5C:0.000463287842189075 5271 chr19 3533330 3533330 1 + C A KIRC 3533330 + 3533310 3533350 41 TCACAGAACCAGATCCTTGTCTGGAAGTACCCCTCCCTGAC TCACAGAACCAGATCCTTGTATGGAAGTACCCCTCCCTGAC Direct Loss 0.948506243240606 0 0.5501963 0 prediction 0.897012486481213 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533330 chr19:3533330 synonymous SNV . 0 21 hm5C_associated_SNPs_49951 0 0 1 0 2 Ribosome 0.500231643921092 0 0.1003926 0.000463287842184856 hm5C_site_5271 DeepMRMD:0.1003926;iRNA_m5C:0.000463287842184856 5272 chr1 32714101 32714101 1 + C A LUSC 32714101 + 32714081 32714121 41 TGGATGAGGCCGAGCTGGAGCTGGAGCTGGAGCCCGGGGCC TGGATGAGGCCGAGCTGGAGATGGAGCTGGAGCCCGGGGCC Direct Loss 0.948496515950765 0 0.87056184 0 prediction 0.89699303190153 Functional Loss - FAM167B ENSG00000183615 CDS Human protein_coding chr1:32714101 chr1:32714101 nonsynonymous SNV 0.987 0 21 hm5C_associated_SNPs_49952 0 0 0 0 0 exosome 0.500231643829078 0 0.74112368 0.00046328765815673 hm5C_site_5272 DeepMRMD:0.74112368;iRNA_m5C:0.00046328765815673 5273 chr6 24357946 24357946 1 + C T HNSC 24357946 + 24357926 24357966 41 CTCTTCACGACGGGCTGAGACAGGTGGCTGGACCTGGCGCT CTCTTCACGACGGGCTGAGATAGGTGGCTGGACCTGGCGCT Direct Loss 0.948494896494221 0 0.90984 0 prediction 0.896989792988441 Functional Loss - DCDC2;KAAG1 ENSG00000146038;ENSG00000146049 CDS Human other chr6:24357946 chr6:24357946 stopgain 0.990 0 21 hm5C_associated_SNPs_49953 0 0 0 0 0 unknown 0.500231643921092 0 0.81968 0.000463287842184856 hm5C_site_5273 DeepMRMD:0.81968;iRNA_m5C:0.000463287842184856 5274 chr9 92220750 92220750 1 + C T GBM 92220750 + 92220730 92220770 41 GCGGCTATCGTGGGCGCCGGCGAGGAGGCGGGTGCGCCGGG GCGGCTATCGTGGGCGCCGGTGAGGAGGCGGGTGCGCCGGG Direct Loss 0.948487366385282 0 0.92865896 0 prediction 0.896974732770564 Functional Loss - GADD45G ENSG00000130222 CDS Human protein_coding chr9:92220750 chr9:92220750 synonymous SNV . 0 21 hm5C_associated_SNPs_49954 0 0 1 0 1 exosome 0.500231643921093 0 0.85731792 0.000463287842185078 hm5C_site_5274 DeepMRMD:0.85731792;iRNA_m5C:0.000463287842185078 5275 chr1 18434374 18434374 1 + C G rs112680314 18434374 + 18434354 18434394 41 GCAGCTAGGGAGCCGAGAACCGCGGCGAGCCCCGAGGACGC GCAGCTAGGGAGCCGAGAACGGCGGCGAGCCCCGAGGACGC Direct Loss 0.948484060779189 0 0.79590935 0 prediction 0.896968121558379 Functional Loss - IGSF21 ENSG00000117154 UTR5 Human protein_coding chr1:18434374 chr1:18434374 . . 0 21 hm5C_associated_SNPs_49955 0 0 0 0 0 Nucleus 0.500231679254572 0 0.5918187 0.000463358509143807 hm5C_site_5275 DeepMRMD:0.5918187;iRNA_m5C:0.000463358509143807 5276 chr13 114287483 114287483 1 + C A COAD 114287483 + 114287463 114287503 41 GGCAAGGGCCTACGGCATTTCTCCATGAAGGTCTGCGAGAA GGCAAGGGCCTACGGCATTTATCCATGAAGGTCTGCGAGAA Direct Loss 0.9484832553266 0 0.9667064 0 prediction 0.896966510653201 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114287483 chr13:114287483 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_49956 0 0 1 0 1 Cytosol 0.500231643921092 0 0.9334128 0.000463287842184856 hm5C_site_5276 DeepMRMD:0.9334128;iRNA_m5C:0.000463287842184856 5277 chr7 150020563 150020563 1 + G C rs566237395 150020563 - 150020543 150020583 41 CCGCAGAGCCGGCGCCTCCTCGGCAGGTAAGAGCCGCAGCC CCGCAGAGCCGGCGCCTCCTGGGCAGGTAAGAGCCGCAGCC Direct Loss 0.948482071301251 0 0.7108328 0 prediction 0.896964142602501 Functional Loss - ACTR3C;LRRC61 ENSG00000106526 CDS Human protein_coding chr7:150020563 chr7:150020563 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_49957 0 0 1 0 1 unknown 0.500231644350698 0 0.4216656 0.000463288701395559 hm5C_site_5277 DeepMRMD:0.4216656;iRNA_m5C:0.000463288701395559 5278 chr16 86612784 86612784 1 + C G rs201954519 86612784 + 86612764 86612804 41 CAAGCCGGGCCCCGGGGCCCCGGAGGCCAAGAGGCCCCGCG CAAGCCGGGCCCCGGGGCCCGGGAGGCCAAGAGGCCCCGCG Direct Loss 0.948478531072542 0 0.89884657 0 prediction 0.896957062145084 Functional Loss - FOXL1 ENSG00000176678 CDS Human protein_coding chr16:86612784 chr16:86612784 nonsynonymous SNV 0.597 1 21 hm5C_associated_SNPs_49958 0 0 0 0 0 exosome 0.500231643921092 0 0.79769314 0.000463287842184856 hm5C_site_5278 DeepMRMD:0.79769314;iRNA_m5C:0.000463287842184856 5279 chr19 7855496 7855496 1 + C G rs4387698 7855496 + 7855476 7855516 41 AGAAGGCTGGCCGGATCTGTCAGCAGAGGCACGGTGCTGAC AGAAGGCTGGCCGGATCTGTGAGCAGAGGCACGGTGCTGAC Direct Loss 0.94845799323992 0 0.8982556 0 prediction 0.89691598647984 Functional Loss - CLEC4GP1 ENSG00000268297 ncRNA_exonic Human unprocessed_pseudogene chr19:7855496 chr19:7855496 . . 0 21 hm5C_associated_SNPs_49959 0 0 0 0 0 unknown 0.500231643921456 0 0.7965112 0.00046328784291183 hm5C_site_5279 DeepMRMD:0.7965112;iRNA_m5C:0.00046328784291183 5280 chr19 47712512 47712512 1 + C G HNSC 47712512 + 47712492 47712532 41 GCCTTGGCCCCAAGTGAACTCAAGATTTGGCAGCCCCAGAG GCCTTGGCCCCAAGTGAACTGAAGATTTGGCAGCCCCAGAG Direct Loss 0.948451505538538 0 0.8363874 0 prediction 0.896903011077075 Functional Loss - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47712512 chr19:47712512 stopgain 0.000 0 21 hm5C_associated_SNPs_49960 0 0 1 2 1 Ribosome 0.500231943126047 0 0.6727748 0.000463886252093371 hm5C_site_5280 DeepMRMD:0.6727748;iRNA_m5C:0.000463886252093371 5281 chr17 56429783 56429783 1 + C T rs536626670 56429783 + 56429763 56429803 41 TGGGGTAGTCAGCGGGCCCCCGGGGCGGGGGGGCGGCTGCG TGGGGTAGTCAGCGGGCCCCTGGGGCGGGGGGGCGGCTGCG Direct Loss 0.948429086494867 0 0.91746366 0 prediction 0.896858172989734 Functional Loss - TSPOAP1-AS1 ENSG00000265148 ncRNA_exonic Human antisense chr17:56429783 chr17:56429783 . . 0 21 hm5C_associated_SNPs_49961 0 0 0 0 0 unknown 0.500231643918789 0 0.83492732 0.000463287837578985 hm5C_site_5281 DeepMRMD:0.83492732;iRNA_m5C:0.000463287837578985 5282 chr1 152671655 152671655 1 + C A STAD 152671655 + 152671635 152671675 41 TTGTTGTGAGTGTGAACCTTCTGGGGGCTCTGGCTGCTGCC TTGTTGTGAGTGTGAACCTTATGGGGGCTCTGGCTGCTGCC Direct Loss 0.948426197969089 0 0.888397 0 prediction 0.896852395938178 Functional Loss - LCE2A ENSG00000187173 CDS Human protein_coding chr1:152671655 chr1:152671655 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_49962 0 0 0 0 0 unknown 0.500231643920881 0 0.776794 0.000463287841762305 hm5C_site_5282 DeepMRMD:0.776794;iRNA_m5C:0.000463287841762305 5283 chr17 4804455 4804455 1 + G T LUAD 4804455 - 4804435 4804475 41 GTGGGCCATCGACTTCTGCCCGGGGGTGATCCGCCGCCACC GTGGGCCATCGACTTCTGCCAGGGGGTGATCCGCCGCCACC Direct Loss 0.948420855778528 0 0.94042176 0 prediction 0.896841711557056 Functional Loss - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4804455 chr17:4804455 nonsynonymous SNV 0.492 3 21 hm5C_associated_SNPs_49963 0 0 0 0 1 exosome 0.500231564081189 0 0.88084352 0.000463128162377036 hm5C_site_5283 DeepMRMD:0.88084352;iRNA_m5C:0.000463128162377036 5284 chr2 55277253 55277253 1 + C G rs190624391 55277253 + 55277233 55277273 41 CACTGGGGCCGCGGACAGCCCGGCGGCGGGCTTCCTCTCCA CACTGGGGCCGCGGACAGCCGGGCGGCGGGCTTCCTCTCCA Direct Loss 0.948418265257164 0 0.90308845 0 prediction 0.896836530514329 Functional Loss - RTN4 ENSG00000115310 CDS Human protein_coding chr2:55277253 chr2:55277253 nonsynonymous SNV 0.920 1 21 hm5C_associated_SNPs_49964 0 0 0 0 1 Ribosome 0.500231643921092 0 0.8061769 0.000463287842184856 hm5C_site_5284 DeepMRMD:0.8061769;iRNA_m5C:0.000463287842184856 5285 chr11 111156589 111156589 1 + C T COAD 111156589 + 111156569 111156609 41 GGAAGATCTGCACCACACTCCGGGGTACCCTACCCCGCCTC GGAAGATCTGCACCACACTCTGGGGTACCCTACCCCGCCTC Direct Loss 0.948417772917388 0 0.95510787 0 prediction 0.896835545834776 Functional Loss - C11orf53 ENSG00000150750 CDS Human protein_coding chr11:111156589 chr11:111156589 nonsynonymous SNV 0.025 2 21 hm5C_associated_SNPs_49965 0 0 0 0 0 Ribosome 0.500231633447743 0 0.91021574 0.000463266895486703 hm5C_site_5285 DeepMRMD:0.91021574;iRNA_m5C:0.000463266895486703 5286 chr3 186917471 186917471 1 + C T CESC 186917471 + 186917451 186917491 41 AAGCAGCTGTGCTATGAGTGCGGCACGGCGCGGCTGGACGA AAGCAGCTGTGCTATGAGTGTGGCACGGCGCGGCTGGACGA Direct Loss 0.948414669872305 0 0.18974221 0 prediction 0.896829339744609 Functional Loss - RTP1 ENSG00000175077 CDS Human protein_coding chr3:186917471 chr3:186917471 synonymous SNV . 0 21 hm5C_associated_SNPs_49966 0 0 0 0 0 exosome 0.500231643921116 0 0 0.000463287842232596 hm5C_site_5286 DeepMRMD:0;iRNA_m5C:0.000463287842232596 5287 chr1 173802613 173802613 1 + C T UCEC 173802613 + 173802593 173802633 41 CCCAGATGGTCATGAAAATGCGGGAATATCTCTGTAATCTG CCCAGATGGTCATGAAAATGTGGGAATATCTCTGTAATCTG Direct Loss 0.94841392762039 0 0.32432643 0 prediction 0.89682785524078 Functional Loss - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173802613 chr1:173802613 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_49967 0 0 1 0 2 chromatin 0.500231643921095 0 0 0.000463287842190407 hm5C_site_5287 DeepMRMD:0;iRNA_m5C:0.000463287842190407 Pulse pressure 5288 chr7 154863245 154863245 1 + G T HNSC 154863245 - 154863225 154863265 41 ACGAAGAGCACCACACAGAGCGGCAGGTAGAAGGCGCCTAC ACGAAGAGCACCACACAGAGAGGCAGGTAGAAGGCGCCTAC Direct Loss 0.94839202502778 0 0.5539094 0 prediction 0.896784050055559 Functional Loss - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154863245 chr7:154863245 synonymous SNV . 0 21 hm5C_associated_SNPs_49968 0 0 0 0 0 exosome 0.500231643284769 0 0.1078188 0.000463286569537091 hm5C_site_5288 DeepMRMD:0.1078188;iRNA_m5C:0.000463286569537091 5289 chr5 133450789 133450789 1 + C T rs187491297 133450789 + 133450769 133450809 41 GAGTCCGAGGGCGCGGCCGGCGGCGCAGGGATCCCGGGGGT GAGTCCGAGGGCGCGGCCGGTGGCGCAGGGATCCCGGGGGT Direct Loss 0.948373830387708 0 0.9214123 0 prediction 0.896747660775416 Functional Loss - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133450789 chr5:133450789 synonymous SNV . 0 21 hm5C_associated_SNPs_49969 0 0 0 0 1 Cytosol 0.500231693018318 0 0.8428246 0.000463386036635427 hm5C_site_5289 DeepMRMD:0.8428246;iRNA_m5C:0.000463386036635427 5290 chrX 16779114 16779114 1 + C T rs753064146 16779114 + 16779094 16779134 41 ATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCGGA ATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACCGGA Direct Loss 0.948372689380383 0 0.92759943 0 prediction 0.896745378760766 Functional Loss - SYAP1 ENSG00000169895 UTR3 Human protein_coding chrX:16779114 chrX:16779114 . . 0 21 hm5C_associated_SNPs_49970 0 0 0 0 0 Ribosome 0.500231643922282 0 0.85519886 0.00046328784456362 hm5C_site_5290 DeepMRMD:0.85519886;iRNA_m5C:0.00046328784456362 5291 chrX 151908813 151908813 1 + C T COAD 151908813 + 151908793 151908833 41 TCACTGTCCTGGGGGAAGCTCGGGGAGACCAGGTGGACTGG TCACTGTCCTGGGGGAAGCTTGGGGAGACCAGGTGGACTGG Direct Loss 0.948371523412852 0 0.9462999 0 prediction 0.896743046825704 Functional Loss - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151908813 chrX:151908813 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49971 0 0 1 0 2 Ribosome 0.500231643921092 0 0.8925998 0.000463287842184856 hm5C_site_5291 DeepMRMD:0.8925998;iRNA_m5C:0.000463287842184856 5292 chr5 140482130 140482130 1 + C T UCEC 140482130 + 140482110 140482150 41 CCGCCAGGCTGCTGAGCGAGCGCGACGCGGCCAAGCACAGG CCGCCAGGCTGCTGAGCGAGTGCGACGCGGCCAAGCACAGG Direct Loss 0.948363457711347 0 0.3866986 0 prediction 0.896726915422693 Functional Loss - PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140482130 chr5:140482130 nonsynonymous SNV 0.980 3 21 hm5C_associated_SNPs_49972 0 0 0 0 0 exosome 0.500231644107188 0 0 0.000463288214376911 hm5C_site_5292 DeepMRMD:0;iRNA_m5C:0.000463288214376911 5293 chr16 12061496 12061496 1 + C T rs561432842 12061496 + 12061476 12061516 41 TGGTGATGAAATTATTCTTCCGAGAGGCCTCGAGTACACGG TGGTGATGAAATTATTCTTCTGAGAGGCCTCGAGTACACGG Direct Loss 0.94836046790567 0 0.83122164 0 prediction 0.89672093581134 Functional Loss - TNFRSF17 ENSG00000048462 CDS Human protein_coding chr16:12061496 chr16:12061496 nonsynonymous SNV 0.003 2 21 hm5C_associated_SNPs_49973 0 0 0 0 1 exosome 0.500231643922941 0 0.66244328 0.000463287845882121 hm5C_site_5293 DeepMRMD:0.66244328;iRNA_m5C:0.000463287845882121 5294 chr16 72057479 72057479 1 + C T UCEC 72057479 + 72057459 72057499 41 CTGTACACGGCCCTCACCTTCTGGGGGCCACCCGTTGTGGG CTGTACACGGCCCTCACCTTTTGGGGGCCACCCGTTGTGGG Direct Loss 0.94834530706201 0 0.91781974 0 prediction 0.896690614124021 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72057479 chr16:72057479 synonymous SNV . 0 21 hm5C_associated_SNPs_49974 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0 0.83563948 0.000463287842184856 hm5C_site_5294 DeepMRMD:0.83563948;iRNA_m5C:0.000463287842184856 5295 chr19 36207421 36207421 1 + C A SKCM 36207421 + 36207401 36207441 41 GCCTTTGTCCTCAGCGCTCCCGGGACTTCTCGGCCATGACC GCCTTTGTCCTCAGCGCTCCAGGGACTTCTCGGCCATGACC Direct Loss 0.948334136352912 0 0.94152784 0 prediction 0.896668272705823 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207421 chr19:36207421 synonymous SNV . 0 21 hm5C_associated_SNPs_49975 0 0 0 0 1 nucleus 0.500231643921093 0 0.88305568 0.000463287842186855 hm5C_site_5295 DeepMRMD:0.88305568;iRNA_m5C:0.000463287842186855 5296 chr1 55074893 55074893 1 + G A rs545983046 55074893 - 55074873 55074913 41 CTCAGGGCGGAGGCTTCCCACGGGGAGGCAGGAAGAAATAA CTCAGGGCGGAGGCTTCCCATGGGGAGGCAGGAAGAAATAA Direct Loss 0.948330871728748 0 0.8992865 0 prediction 0.896661743457495 Functional Loss - ACOT11;FAM151A ENSG00000162390;ENSG00000162391 UTR3 Human other chr1:55074893 chr1:55074893 . . 0 21 hm5C_associated_SNPs_49976 0 0 0 0 0 unknown 0.500231643914204 0 0.798573 0.000463287828407433 hm5C_site_5296 DeepMRMD:0.798573;iRNA_m5C:0.000463287828407433 5297 chr15 66995553 66995553 1 + C T rs138443554 66995553 + 66995533 66995573 41 AGGGAACGGACCCCCGGTAACCGGAGACCGCCTCCCCCCCA AGGGAACGGACCCCCGGTAATCGGAGACCGCCTCCCCCCCA Direct Loss 0.948329237781364 0 0.9330395 0 prediction 0.896658475562729 Functional Loss - SMAD6 ENSG00000137834 UTR5 Human protein_coding chr15:66995553 chr15:66995553 . . 0 21 hm5C_associated_SNPs_49977 0 0 0 0 0 Cytosol 0.500231643921166 0 0.866079 0.000463287842332294 hm5C_site_5297 DeepMRMD:0.866079;iRNA_m5C:0.000463287842332294 5298 chr1 2938988 2938988 1 + C T BLCA 2938988 + 2938968 2939008 41 AGGGAGTACAAGCTGCCCGACGGGAACATCATCAGCCTCGG AGGGAGTACAAGCTGCCCGATGGGAACATCATCAGCCTCGG Direct Loss 0.948318084247684 0 0.6580748 0 prediction 0.896636168495368 Functional Loss - ACTRT2 ENSG00000169717 CDS Human protein_coding chr1:2938988 chr1:2938988 synonymous SNV . 0 21 hm5C_associated_SNPs_49978 0 0 0 0 0 unknown 0.500231643921093 0 0.3161496 0.000463287842185078 hm5C_site_5298 DeepMRMD:0.3161496;iRNA_m5C:0.000463287842185078 5299 chr20 4707567 4707567 1 + C G rs553332526 4707567 + 4707547 4707587 41 GGAGACGTCCACCCTGCAGCCAGGACTGGGGTTCACGTCAC GGAGACGTCCACCCTGCAGCGAGGACTGGGGTTCACGTCAC Direct Loss 0.948314817810543 0 0.8619787 0 prediction 0.896629635621086 Functional Loss - PRND ENSG00000171864 UTR3 Human protein_coding chr20:4707567 chr20:4707567 . . 0 21 hm5C_associated_SNPs_49979 0 0 0 0 0 Nucleus 0.500231613660579 0 0.7239574 0.000463227321157778 hm5C_site_5299 DeepMRMD:0.7239574;iRNA_m5C:0.000463227321157778 5300 chr14 32329401 32329401 1 + C A rs551958784 32329401 + 32329381 32329421 41 TGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA TGCCTGTAATCCCAGCTACTAGGGAGGCTGAGGCAGGAGAA Direct Loss 0.948314489827303 0 0.9212084 0 prediction 0.896628979654606 Functional Loss - NUBPL ENSG00000151413 UTR3 Human protein_coding chr14:32329401 chr14:32329401 . . 0 21 hm5C_associated_SNPs_49980 1 0 0 0 0 chromatin 0.500231643921092 0 0.8424168 0.000463287842184856 hm5C_site_5300 DeepMRMD:0.8424168;iRNA_m5C:0.000463287842184856 Mitochondrial complex I deficiency Mitochondrial complex I deficiency 5301 chr6 32611649 32611649 1 + C T rs9273013 32611649 + 32611629 32611669 41 AGTGACAATGGGAAAAGGGACGGGAGTAGAAGCCACAGACA AGTGACAATGGGAAAAGGGATGGGAGTAGAAGCCACAGACA Direct Loss 0.948299580698864 0 0.9007483 0 prediction 0.896599161397728 Functional Loss - HLA-DQA1 ENSG00000196735 downstream Human protein_coding chr6:32611649 chr6:32611649 . . 0 21 hm5C_associated_SNPs_49981 0 0 0 0 0 exosome 0.500231643923376 0 0.8014966 0.00046328784675298 hm5C_site_5301 DeepMRMD:0.8014966;iRNA_m5C:0.00046328784675298 5302 chr11 86663135 86663135 1 + G T GBM 86663135 - 86663115 86663155 41 GCCAAGGAGTTCACTGATATCTGGATGGCTGTGTGGGCCAG GCCAAGGAGTTCACTGATATATGGATGGCTGTGTGGGCCAG Direct Loss 0.948294133246051 0 0.16663241 0 prediction 0.896588266492103 Functional Loss - FZD4 ENSG00000174804 CDS Human protein_coding chr11:86663135 chr11:86663135 synonymous SNV . 0 21 hm5C_associated_SNPs_49982 0 0 0 0 0 Ribosome 0.500273191441892 0 0 0.000546382883783725 hm5C_site_5302 DeepMRMD:0;iRNA_m5C:0.000546382883783725 5303 chr1 110693411 110693411 1 + C A rs149892771 110693411 + 110693391 110693431 41 CCAGCCGGGGGCCTGTGGCCCGGGGGAGGAGCTGTGCGTCC CCAGCCGGGGGCCTGTGGCCAGGGGGAGGAGCTGTGCGTCC Direct Loss 0.948293656874461 0 0.9338807 0 prediction 0.896587313748922 Functional Loss - SLC6A17 ENSG00000197106 UTR5 Human protein_coding chr1:110693411 chr1:110693411 . . 0 21 hm5C_associated_SNPs_49983 0 0 0 0 1 exosome 0.500231643921145 0 0.8677614 0.000463287842290772 hm5C_site_5303 DeepMRMD:0.8677614;iRNA_m5C:0.000463287842290772 5304 chr14 94568857 94568857 1 + C T SKCM 94568857 + 94568837 94568877 41 TCTGTGACATCTAAAGTTATCGGGGGCTTTGCTGGGACAGC TCTGTGACATCTAAAGTTATTGGGGGCTTTGCTGGGACAGC Direct Loss 0.948287625986684 0 0.9544388 0 prediction 0.896575251973368 Functional Loss - IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568857 chr14:94568857 synonymous SNV . 0 21 hm5C_associated_SNPs_49984 0 0 1 0 1 Ribosome 0.500231643921092 0 0.9088776 0.000463287842184856 hm5C_site_5304 DeepMRMD:0.9088776;iRNA_m5C:0.000463287842184856 5305 chr17 60691274 60691274 1 + C T rs550140664 60691274 + 60691254 60691294 41 AGGTGGGTGGATCACGAGGTCGGGAGTTCGAGATCAGTCTG AGGTGGGTGGATCACGAGGTTGGGAGTTCGAGATCAGTCTG Direct Loss 0.948286424180989 0 0.91999733 0 prediction 0.896572848361977 Functional Loss - TLK2 ENSG00000146872 downstream Human protein_coding chr17:60691274 chr17:60691274 . . 0 21 hm5C_associated_SNPs_49985 0 0 1 0 0 Cytosol 0.500231886637901 0 0.83999466 0.000463773275802604 hm5C_site_5305 DeepMRMD:0.83999466;iRNA_m5C:0.000463773275802604 5306 chr5 140482417 140482417 1 + C T COAD 140482417 + 140482397 140482437 41 GTGGGTCGCTGCTCGGTGCCCGAGGGCCCCTTTCCAGGGCA GTGGGTCGCTGCTCGGTGCCTGAGGGCCCCTTTCCAGGGCA Direct Loss 0.948284861974218 0 0.8870961 0 prediction 0.896569723948436 Functional Loss - PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140482417 chr5:140482417 synonymous SNV . 0 21 hm5C_associated_SNPs_49986 0 0 0 0 0 exosome 0.500231641339465 0 0.7741922 0.000463282678930588 hm5C_site_5306 DeepMRMD:0.7741922;iRNA_m5C:0.000463282678930588 5307 chr1 20662908 20662908 1 + C T UCEC 20662908 + 20662888 20662928 41 TGGAGACTGTGCCAAGAACTCGGGGGCACCCTTCATCCTAG TGGAGACTGTGCCAAGAACTTGGGGGCACCCTTCATCCTAG Direct Loss 0.948272073403706 0 0.9392768 0 prediction 0.896544146807413 Functional Loss - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20662908 chr1:20662908 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_49987 0 0 0 0 1 exosome 0.500232423166961 0 0.8785536 0.000464846333921409 hm5C_site_5307 DeepMRMD:0.8785536;iRNA_m5C:0.000464846333921409 5308 chr19 50939300 50939300 1 + C A LUAD 50939300 + 50939280 50939320 41 GTGGTCGTGGCCAAGGTGAACGGGAAGGAGCTCCCAGACAA GTGGTCGTGGCCAAGGTGAAAGGGAAGGAGCTCCCAGACAA Direct Loss 0.948262894302682 0 0.73032343 0 prediction 0.896525788605363 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50939300 chr19:50939300 nonsynonymous SNV 0.979 0 21 hm5C_associated_SNPs_49988 0 0 0 0 1 exosome 0.500231643921092 0 0.46064686 0.000463287842184856 hm5C_site_5308 DeepMRMD:0.46064686;iRNA_m5C:0.000463287842184856 5309 chr14 20249186 20249186 1 + C T SKCM 20249186 + 20249166 20249206 41 TCAGGCTCAGGTGAGAATACCAACAGGGCCATGTCCACCTG TCAGGCTCAGGTGAGAATACTAACAGGGCCATGTCCACCTG Direct Loss 0.948262030260852 0 0.19351509 0 prediction 0.896524060521703 Functional Loss - OR4M1 ENSG00000176299 CDS Human protein_coding chr14:20249186 chr14:20249186 synonymous SNV . 0 21 hm5C_associated_SNPs_49989 0 0 0 0 0 unknown 0.500228445994375 0 0 0.000456891988750208 hm5C_site_5309 DeepMRMD:0;iRNA_m5C:0.000456891988750208 5310 chr17 33325679 33325679 1 + C T UCEC 33325679 + 33325659 33325699 41 GTGAAGAAAGACTATTTGAACGAGGGGGCCATGGCCGACAC GTGAAGAAAGACTATTTGAATGAGGGGGCCATGGCCGACAC Direct Loss 0.948258808852711 0 0.91109693 0 prediction 0.896517617705422 Functional Loss - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33325679 chr17:33325679 synonymous SNV . 0 21 hm5C_associated_SNPs_49990 0 0 1 0 1 Cytosol 0.500231643916471 0 0.82219386 0.00046328783294225 hm5C_site_5310 DeepMRMD:0.82219386;iRNA_m5C:0.00046328783294225 5311 chr5 140482078 140482078 1 + C T READ 140482078 + 140482058 140482098 41 GCCACGGAGCCCGGGCTGTTCGGCGTGTGGGCGCACAATGG GCCACGGAGCCCGGGCTGTTTGGCGTGTGGGCGCACAATGG Direct Loss 0.948243903423673 0 0.86226416 0 prediction 0.896487806847345 Functional Loss - PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140482078 chr5:140482078 synonymous SNV . 0 21 hm5C_associated_SNPs_49991 0 0 0 0 0 exosome 0.500231643921082 0 0.72452832 0.00046328784216465 hm5C_site_5311 DeepMRMD:0.72452832;iRNA_m5C:0.00046328784216465 5312 chr11 67379872 67379872 1 + C T COAD 67379872 + 67379852 67379892 41 CGCCACTTTCGGCCGGAGCTCGAGGAGCGGATGCAGCGGTT CGCCACTTTCGGCCGGAGCTTGAGGAGCGGATGCAGCGGTT Direct Loss 0.948226023330171 0 0.94038963 0 prediction 0.896452046660343 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67379872 chr11:67379872 synonymous SNV . 0 21 hm5C_associated_SNPs_49992 0 0 1 0 0 Ribosome 0.500231643921972 0 0.88077926 0.000463287843943005 hm5C_site_5312 DeepMRMD:0.88077926;iRNA_m5C:0.000463287843943005 5313 chr17 16342539 16342539 1 + C T rs540226461 16342539 + 16342519 16342559 41 TCCTGCGCCCGCGTGGCTTTCGCGGCGGGCGCTGCGGCCCG TCCTGCGCCCGCGTGGCTTTTGCGGCGGGCGCTGCGGCCCG Direct Loss 0.948214410768096 0 0.9365469 0 prediction 0.896428821536193 Functional Loss - LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342539 chr17:16342539 . . 0 21 hm5C_associated_SNPs_49993 0 0 1 0 0 Nucleus 0.500231643921092 0 0.8730938 0.000463287842183746 hm5C_site_5313 DeepMRMD:0.8730938;iRNA_m5C:0.000463287842183746 5314 chr3 142838693 142838693 1 + C T rs184039954 142838693 + 142838673 142838713 41 CCTCCTGGGCGCCGCTTTCGCGCGGCGGCGGCGGCTGCGGC CCTCCTGGGCGCCGCTTTCGTGCGGCGGCGGCGGCTGCGGC Direct Loss 0.948208499632953 0 0.913503 0 prediction 0.896416999265905 Functional Loss - CHST2 ENSG00000175040 UTR5 Human protein_coding chr3:142838693 chr3:142838693 . . 0 21 hm5C_associated_SNPs_49994 0 0 1 0 0 cytosol 0.500231643921093 0 0.827006 0.000463287842185078 hm5C_site_5314 DeepMRMD:0.827006;iRNA_m5C:0.000463287842185078 5315 chr4 110791831 110791831 1 + C T rs180730119 110791831 + 110791811 110791851 41 TCTCAAAGTGTAGGTGAGCTCTGGACACGAAGCCACAGGGA TCTCAAAGTGTAGGTGAGCTTTGGACACGAAGCCACAGGGA Direct Loss 0.948207292774888 0 0.3322329 0 prediction 0.896414585549777 Functional Loss - LRIT3 ENSG00000183423 CDS Human protein_coding chr4:110791831 chr4:110791831 synonymous SNV . 0 21 hm5C_associated_SNPs_49995 0 0 0 0 0 Nucleus 0.500231643921093 0 0 0.000463287842185744 hm5C_site_5315 DeepMRMD:0;iRNA_m5C:0.000463287842185744 5316 chr1 33765277 33765277 1 + C T rs1132789 33765277 + 33765257 33765297 41 GCAGCTTCAGGAGGCAGAAACGAGAGGGGTGGGAGATCCAC GCAGCTTCAGGAGGCAGAAATGAGAGGGGTGGGAGATCCAC Direct Loss 0.948202395068675 0 0.87937105 0 prediction 0.89640479013735 Functional Loss - ZNF362 ENSG00000256142 ncRNA_exonic Human other chr1:33765277 chr1:33765277 . . 0 21 hm5C_associated_SNPs_49996 0 0 0 0 0 Nucleus 0.500231643921093 0 0.7587421 0.000463287842185078 hm5C_site_5316 DeepMRMD:0.7587421;iRNA_m5C:0.000463287842185078 5317 chr9 37430673 37430673 1 + C T SARC 37430673 + 37430653 37430693 41 GGCCACCTTACCCAGCAAGCCTGGAGAGGAGCCATCCCCAC GGCCACCTTACCCAGCAAGCTTGGAGAGGAGCCATCCCCAC Direct Loss 0.948201087871118 0 0.37720126 0 prediction 0.896402175742236 Functional Loss - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37430673 chr9:37430673 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_49997 0 0 1 0 0 Ribosome 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5317 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5318 chr2 144381776 144381776 1 + C T UCEC 144381776 + 144381756 144381796 41 GAGCACTGAAGATGTTTTTCCGGGAGCTGCCTGAGCCGCTC GAGCACTGAAGATGTTTTTCTGGGAGCTGCCTGAGCCGCTC Direct Loss 0.948200843765675 0 0.9198916 0 prediction 0.89640168753135 Functional Loss - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:144381776 chr2:144381776 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_49998 0 0 0 0 2 Cytosol 0.500232062354701 0 0.8397832 0.000464124709401492 hm5C_site_5318 DeepMRMD:0.8397832;iRNA_m5C:0.000464124709401492 5319 chr11 13031992 13031992 1 + C G rs201986043 13031992 + 13031972 13032012 41 CGAGCTCGACGGGTCCAGACCGGGAGAGGAGCCAGAAGAGG CGAGCTCGACGGGTCCAGACGGGGAGAGGAGCCAGAAGAGG Direct Loss 0.948197487730932 0 0.7106124 0 prediction 0.896394975461865 Functional Loss - RASSF10 ENSG00000189431 ncRNA_exonic Human protein_coding chr11:13031992 chr11:13031992 . 0.003 0 21 hm5C_associated_SNPs_49999 0 0 0 0 0 exosome 0.500231643917161 0 0.4212248 0.000463287834321147 hm5C_site_5319 DeepMRMD:0.4212248;iRNA_m5C:0.000463287834321147 5320 chr11 32852167 32852167 1 + C T rs61889489 32852167 + 32852147 32852187 41 TCCAAAGGCTTCTAAGCATGCGGGAGAAGAAGGTAAGCACT TCCAAAGGCTTCTAAGCATGTGGGAGAAGAAGGTAAGCACT Direct Loss 0.948196461454601 0 0.9145192 0 prediction 0.896392922909201 Functional Loss - PRRG4 ENSG00000135378 CDS Human protein_coding chr11:32852167 chr11:32852167 nonsynonymous SNV 0.035 1 21 hm5C_associated_SNPs_50000 0 0 0 0 1 Ribosome 0.500231643921093 0 0.8290384 0.000463287842186411 hm5C_site_5320 DeepMRMD:0.8290384;iRNA_m5C:0.000463287842186411 5321 chr7 76111950 76111950 1 + C G BRCA 76111950 + 76111930 76111970 41 AAGCCAGCGTCTGTGACTATCTGGAGCAGCAGGTGGCCAGG AAGCCAGCGTCTGTGACTATGTGGAGCAGCAGGTGGCCAGG Direct Loss 0.948196052437081 0 0.92109716 0 prediction 0.896392104874162 Functional Loss - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76111950 chr7:76111950 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_50001 0 0 0 0 0 Nucleus 0.500231643858361 0 0.84219432 0.000463287716722993 hm5C_site_5321 DeepMRMD:0.84219432;iRNA_m5C:0.000463287716722993 5322 chr4 94750849 94750849 1 + C A LUAD 94750849 + 94750829 94750869 41 CGACCGCAGCTGGGGCTCAGCAGGCTTCCGGAGGGAGCCAG CGACCGCAGCTGGGGCTCAGAAGGCTTCCGGAGGGAGCCAG Direct Loss 0.948193538711527 0 0.89710695 0 prediction 0.896387077423054 Functional Loss - ATOH1 ENSG00000172238 CDS Human protein_coding chr4:94750849 chr4:94750849 nonsynonymous SNV 0.484 1 21 hm5C_associated_SNPs_50002 0 0 0 0 0 unknown 0.500231643920719 0 0.7942139 0.000463287841438564 hm5C_site_5322 DeepMRMD:0.7942139;iRNA_m5C:0.000463287841438564 5323 chr5 161524799 161524799 1 + C A LUAD 161524799 + 161524779 161524819 41 TCCAAAAAAGCTGATGCACACTGGATCACCACCCCCAACAG TCCAAAAAAGCTGATGCACAATGGATCACCACCCCCAACAG Direct Loss 0.948186605198602 0 0.39930147 0 prediction 0.896373210397204 Functional Loss - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161524799 chr5:161524799 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_50003 0 0 0 0 1 exosome 0.500231801346329 0 0 0.000463602692658549 hm5C_site_5323 DeepMRMD:0;iRNA_m5C:0.000463602692658549 5324 chr14 24108198 24108198 1 + C T STAD 24108198 + 24108178 24108218 41 TAACCGGGTAGCCGTGGTCACGGGGTCCACCAGTGGGTGAG TAACCGGGTAGCCGTGGTCATGGGGTCCACCAGTGGGTGAG Direct Loss 0.948185596716626 0 0.92528903 0 prediction 0.896371193433252 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108198 chr14:24108198 nonsynonymous SNV 0.026 4 21 hm5C_associated_SNPs_50004 0 0 1 0 1 Ribosome 0.500231644396926 0 0.85057806 0.000463288793851602 hm5C_site_5324 DeepMRMD:0.85057806;iRNA_m5C:0.000463288793851602 5325 chr2 169417792 169417792 1 + C T SKCM 169417792 + 169417772 169417812 41 GGTTTCGACAAAGACGCAATCAGGAGAAGCCAAGCACGCTG GGTTTCGACAAAGACGCAATTAGGAGAAGCCAAGCACGCTG Direct Loss 0.948171856879196 0 0.9100449 0 prediction 0.896343713758392 Functional Loss - CERS6 ENSG00000172292 CDS Human protein_coding chr2:169417792 chr2:169417792 stopgain 0.999 1 21 hm5C_associated_SNPs_50005 0 0 1 0 2 Endoplasmic reticulum 0.500231644241605 0 0.8200898 0.000463288483209201 hm5C_site_5325 DeepMRMD:0.8200898;iRNA_m5C:0.000463288483209201 5326 chr7 36193946 36193946 1 + C G KIRC 36193946 + 36193926 36193966 41 GGCGGACCATGGGGAGCACCCTGGGCTGCCACCGCTCCATC GGCGGACCATGGGGAGCACCGTGGGCTGCCACCGCTCCATC Direct Loss 0.948170688857192 0 0.93972623 0 prediction 0.896341377714384 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36193946 chr7:36193946 nonsynonymous SNV 0.995 3 21 hm5C_associated_SNPs_50006 0 0 1 0 0 cytosol 0.500231643921092 0 0.87945246 0.000463287842184856 hm5C_site_5326 DeepMRMD:0.87945246;iRNA_m5C:0.000463287842184856 5327 chr14 55004881 55004881 1 + C G STAD 55004881 + 55004861 55004901 41 GTTGGAAAAGGTGGGACTCTCTGAAAGTGAAGTTGAGCCAT GTTGGAAAAGGTGGGACTCTGTGAAAGTGAAGTTGAGCCAT Direct Loss 0.948150466213082 0 0.4663041 0 prediction 0.896300932426164 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:55004881 chr14:55004881 nonsynonymous SNV 0.035 0 21 hm5C_associated_SNPs_50007 0 0 1 0 0 Endoplasmic reticulum 0.500231643355377 0 0 0.000463286710754574 hm5C_site_5327 DeepMRMD:0;iRNA_m5C:0.000463286710754574 5328 chr5 113698592 113698592 1 + C T STAD 113698592 + 113698572 113698612 41 CTGCAGCCCCCCGCGTCTGTCGGAGGAGGTGGCGGCGCGTC CTGCAGCCCCCCGCGTCTGTTGGAGGAGGTGGCGGCGCGTC Direct Loss 0.948149055679141 0 0.9567808 0 prediction 0.896298111358282 Functional Loss - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113698592 chr5:113698592 synonymous SNV . 0 21 hm5C_associated_SNPs_50008 0 0 0 0 0 Cytosol 0.500231643921089 0 0.9135616 0.000463287842177973 hm5C_site_5328 DeepMRMD:0.9135616;iRNA_m5C:0.000463287842177973 5329 chr2 25042625 25042625 1 + C G rs1044040 25042625 + 25042605 25042645 41 GGGGACACTACAGGCACACACAGGAATAGCAGGGCCACCCT GGGGACACTACAGGCACACAGAGGAATAGCAGGGCCACCCT Direct Loss 0.948132350530056 0 0.91753423 0 prediction 0.896264701060113 Functional Loss - ADCY3;CENPO ENSG00000138031;ENSG00000138092 UTR3 Human other chr2:25042625 chr2:25042625 . . 0 21 hm5C_associated_SNPs_50009 0 0 0 1 0 unknown 0.500231643921173 0 0.83506846 0.000463287842345395 hm5C_site_5329 DeepMRMD:0.83506846;iRNA_m5C:0.000463287842345395 5330 chr6 35773512 35773512 1 + C T COAD 35773512 + 35773492 35773532 41 TACCAACTATGTGCGGAACTCGCGAGCCGTGGGCGTGATGT TACCAACTATGTGCGGAACTTGCGAGCCGTGGGCGTGATGT Direct Loss 0.948120974893888 0 0.74336886 0 prediction 0.896241949787776 Functional Loss - LHFPL5 ENSG00000197753 CDS Human protein_coding chr6:35773512 chr6:35773512 nonsynonymous SNV 0.914 2 21 hm5C_associated_SNPs_50010 0 0 0 0 0 exosome 0.500231643921092 0 0.48673772 0.000463287842184856 hm5C_site_5330 DeepMRMD:0.48673772;iRNA_m5C:0.000463287842184856 5331 chr17 79612315 79612315 1 + C A BLCA 79612315 + 79612295 79612335 41 AGGGGTCTCTGGGAAGTGATCTGGGGGGGCCCCTGCCCGCA AGGGGTCTCTGGGAAGTGATATGGGGGGGCCCCTGCCCGCA Direct Loss 0.948119451341893 0 0.92678875 0 prediction 0.896238902683785 Functional Loss - TSPAN10 ENSG00000182612 CDS Human protein_coding chr17:79612315 chr17:79612315 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_50011 0 0 1 0 0 nucleoplasm 0.500231643904467 0 0.8535775 0.000463287808933011 hm5C_site_5331 DeepMRMD:0.8535775;iRNA_m5C:0.000463287808933011 5332 chr14 23072576 23072576 1 + C T GBM 23072576 + 23072556 23072596 41 TGACATCGATAGAGACATGGCGGGAGACCATGGGGATCCCC TGACATCGATAGAGACATGGTGGGAGACCATGGGGATCCCC Direct Loss 0.948115610879127 0 0.64969444 0 prediction 0.896231221758253 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23072576 chr14:23072576 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_50012 0 0 0 0 1 cytosol 0.500231643910138 0 0.29938888 0.000463287820276825 hm5C_site_5332 DeepMRMD:0.29938888;iRNA_m5C:0.000463287820276825 5333 chr7 150094608 150094608 1 + C T CESC 150094608 + 150094588 150094628 41 CGCACTGTGGCCGCGGCTTCCGCCAGAAGCAGCACCTGCTC CGCACTGTGGCCGCGGCTTCTGCCAGAAGCAGCACCTGCTC Direct Loss 0.94811281472641 0 0.7567814 0 prediction 0.896225629452821 Functional Loss - ZNF775 ENSG00000196456 CDS Human protein_coding chr7:150094608 chr7:150094608 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_50013 0 0 1 0 0 Cytosol 0.500231645203739 0 0.5135628 0.000463290407478834 hm5C_site_5333 DeepMRMD:0.5135628;iRNA_m5C:0.000463290407478834 5334 chr17 51901021 51901021 1 + G C HNSC 51901021 - 51901001 51901041 41 ACGCAGATGCGATGTTCTTGCGGGGGCTCCAGGACTGAGAT ACGCAGATGCGATGTTCTTGGGGGGGCTCCAGGACTGAGAT Direct Loss 0.948095842774379 0 0.93844163 0 prediction 0.896191685548758 Functional Loss - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901021 chr17:51901021 synonymous SNV . 0 21 hm5C_associated_SNPs_50014 0 0 0 0 1 exosome 0.500231643703599 0 0.87688326 0.000463287407197699 hm5C_site_5334 DeepMRMD:0.87688326;iRNA_m5C:0.000463287407197699 5335 chr4 81123222 81123222 1 + C T LUSC 81123222 + 81123202 81123242 41 GGCGTGGGCACCAAGGACCACGGGGGCGGCGGCGGCGGTGG GGCGTGGGCACCAAGGACCATGGGGGCGGCGGCGGCGGTGG Direct Loss 0.948092176373006 0 0.888289 0 prediction 0.896184352746011 Functional Loss - PRDM8 ENSG00000152784 CDS Human protein_coding chr4:81123222 chr4:81123222 synonymous SNV . 0 21 hm5C_associated_SNPs_50015 0 0 0 0 0 exosome 0.500231643921092 0 0.776578 0.000463287842183968 hm5C_site_5335 DeepMRMD:0.776578;iRNA_m5C:0.000463287842183968 5336 chr7 99725205 99725205 1 + C A LUAD 99725205 + 99725185 99725225 41 CCAGCCACCGAGAGTCCCCGCGCGGGAGTGGCGGCGCAGAG CCAGCCACCGAGAGTCCCCGAGCGGGAGTGGCGGCGCAGAG Direct Loss 0.948087808581506 0 0.7470348 0 prediction 0.896175617163013 Functional Loss - MBLAC1 ENSG00000214309 CDS Human protein_coding chr7:99725205 chr7:99725205 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_50016 0 0 0 0 0 chromatin 0.500231824635087 0 0.4940696 0.000463649270173283 hm5C_site_5336 DeepMRMD:0.4940696;iRNA_m5C:0.000463649270173283 5337 chr1 11907648 11907648 1 + C T rs5063 11907648 + 11907628 11907668 41 CATCAGGTCTGCGTTGGACACGGCATTGTACATGGGATTAG CATCAGGTCTGCGTTGGACATGGCATTGTACATGGGATTAG Direct Loss 0.948073123703975 0 0.44823182 0 prediction 0.89614624740795 Functional Loss - NPPA ENSG00000175206 CDS Human protein_coding chr1:11907648 chr1:11907648 nonsynonymous SNV 0.015 0 21 hm5C_associated_SNPs_50017 0 0 0 0 1 exosome 0.500231643206418 0 0 0.000463286412835995 hm5C_site_5337 DeepMRMD:0;iRNA_m5C:0.000463286412835995 5338 chr22 20194318 20194318 1 + C A UCEC 20194318 + 20194298 20194338 41 GGTGGGGTGCAGGGGCCTCCCTGGCTGCAGGGCCCACCCAC GGTGGGGTGCAGGGGCCTCCATGGCTGCAGGGCCCACCCAC Direct Loss 0.948055636536966 0 0.1944845 0 prediction 0.896111273073932 Functional Loss - LINC00896 ENSG00000236499 ncRNA_exonic Human lincRNA chr22:20194318 chr22:20194318 . . 0 21 hm5C_associated_SNPs_50018 0 0 1 0 0 unknown 0.500231598466877 0 0 0.000463196933753851 hm5C_site_5338 DeepMRMD:0;iRNA_m5C:0.000463196933753851 5339 chr19 14139063 14139063 1 + C T UCEC 14139063 + 14139043 14139083 41 CCTGGCGGTATGGGTGCTGACCGGGGAGCTGTGGCCGGGAG CCTGGCGGTATGGGTGCTGATCGGGGAGCTGTGGCCGGGAG Direct Loss 0.948034458404575 0 0.9079448 0 prediction 0.89606891680915 Functional Loss - RLN3 ENSG00000171136 CDS Human protein_coding chr19:14139063 chr19:14139063 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_50019 0 0 0 0 0 exosome 0.500231643860338 0 0.8158896 0.000463287720675609 hm5C_site_5339 DeepMRMD:0.8158896;iRNA_m5C:0.000463287720675609 5340 chr12 10217424 10217424 1 + C A LUAD 10217424 + 10217404 10217444 41 ACAGCGGACGCTGGCTTTGGCAAGATGGCTCCTCTCCTTCT ACAGCGGACGCTGGCTTTGGAAAGATGGCTCCTCTCCTTCT Direct Loss 0.948033968069703 0 0.9245336 0 prediction 0.896067936139406 Functional Loss - CLEC9A ENSG00000197992 CDS Human protein_coding chr12:10217424 chr12:10217424 nonsynonymous SNV 0.265 0 21 hm5C_associated_SNPs_50020 0 0 0 0 2 exosome 0.500231643921093 0 0.8490672 0.000463287842185078 hm5C_site_5340 DeepMRMD:0.8490672;iRNA_m5C:0.000463287842185078 5341 chr6 26924849 26924849 1 + C A rs542271346 26924849 + 26924829 26924869 41 GGGCTGAAGGGCTCCTGAAGCGCGGCCAGAGTGGGCTGAGG GGGCTGAAGGGCTCCTGAAGAGCGGCCAGAGTGGGCTGAGG Direct Loss 0.948023036111403 0 0.83370614 0 prediction 0.896046072222807 Functional Loss - LINC00240 ENSG00000224843 ncRNA_exonic Human lincRNA chr6:26924849 chr6:26924849 . . 0 21 hm5C_associated_SNPs_50021 0 0 0 0 0 unknown 0.500231643921092 0 0.66741228 0.000463287842184856 hm5C_site_5341 DeepMRMD:0.66741228;iRNA_m5C:0.000463287842184856 5342 chr7 154862996 154862996 1 + C G LUAD 154862996 + 154862976 154863016 41 CTTTGCTGCACGGCCAGCATCTGGAACGTGACGGCCATAGC CTTTGCTGCACGGCCAGCATGTGGAACGTGACGGCCATAGC Direct Loss 0.948019920341053 0 0.5359413 0 prediction 0.896039840682105 Functional Loss - HTR5A ENSG00000157219;ENSG00000220575 CDS Human other chr7:154862996 chr7:154862996 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_50022 0 0 0 0 0 exosome 0.5002331107456 0 0.0718825999999999 0.000466221491200569 hm5C_site_5342 DeepMRMD:0.0718825999999999;iRNA_m5C:0.000466221491200569 5343 chr6 1610778 1610778 1 + C T DLBC 1610778 + 1610758 1610798 41 CCGCGCGGCGGCCGCGGCGGCCGGGGGCGGCTACACCGCCA CCGCGCGGCGGCCGCGGCGGTCGGGGGCGGCTACACCGCCA Direct Loss 0.947995392151682 0 0.9420012 0 prediction 0.895990784303365 Functional Loss - FOXC1 ENSG00000054598 CDS Human protein_coding chr6:1610778 chr6:1610778 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_50023 0 0 0 0 0 Cytosol 0.500231643849188 0 0.8840024 0.00046328769837567 hm5C_site_5343 DeepMRMD:0.8840024;iRNA_m5C:0.00046328769837567 5344 chr17 65052300 65052300 1 + C T UCEC 65052300 + 65052280 65052320 41 GCCTTCATCCTCCTCTTTCTCGGCGGTCTCGCCCTCCTGCT GCCTTCATCCTCCTCTTTCTTGGCGGTCTCGCCCTCCTGCT Direct Loss 0.947992695230716 0 0.953884 0 prediction 0.895985390461433 Functional Loss - CACNG1 ENSG00000108878 CDS Human protein_coding chr17:65052300 chr17:65052300 synonymous SNV . 0 21 hm5C_associated_SNPs_50024 0 0 0 0 0 unknown 0.500231643921092 0 0.907768 0.000463287842184856 hm5C_site_5344 DeepMRMD:0.907768;iRNA_m5C:0.000463287842184856 5345 chr3 42982786 42982786 1 + C A LUAD 42982786 + 42982766 42982806 41 TGGGCCATCATGGTGCCTGCCGAGAGGGCCTTGTACAGGGA TGGGCCATCATGGTGCCTGCAGAGAGGGCCTTGTACAGGGA Direct Loss 0.947989651098619 0 0.3343666 0 prediction 0.895979302197238 Functional Loss - KRBOX1 ENSG00000240747;ENSG00000273291 CDS Human other chr3:42982786 chr3:42982786 synonymous SNV . 0 21 hm5C_associated_SNPs_50025 0 0 0 0 2 Nucleus 0.500231643921146 0 0 0.000463287842291216 hm5C_site_5345 DeepMRMD:0;iRNA_m5C:0.000463287842291216 5346 chr17 4402295 4402295 1 + C T rs183202433 4402295 + 4402275 4402315 41 ACGCGCTGAGCGGGCCCAGCCTGGGCCCCGCGCCCCCCGCG ACGCGCTGAGCGGGCCCAGCTTGGGCCCCGCGCCCCCCGCG Direct Loss 0.947988918539213 0 0.88787544 0 prediction 0.895977837078426 Functional Loss - SPNS2 ENSG00000229782 ncRNA_intronic Human antisense chr17:4402295 chr17:4402295 . . 0 21 hm5C_associated_SNPs_50026 0 0 0 0 0 Ribosome 0.500231643921093 0 0.77575088 0.000463287842185078 hm5C_site_5346 DeepMRMD:0.77575088;iRNA_m5C:0.000463287842185078 5347 chr16 89985930 89985930 1 + C T STAD 89985930 + 89985910 89985950 41 TTGTCGGACCTGCTGGTGAGCGGGAGCAACGTGCTGGAGAC TTGTCGGACCTGCTGGTGAGTGGGAGCAACGTGCTGGAGAC Direct Loss 0.947986759111259 0 0.9276347 0 prediction 0.895973518222518 Functional Loss - MC1R ENSG00000198211;ENSG00000258839 CDS Human other chr16:89985930 chr16:89985930 synonymous SNV . 0 21 hm5C_associated_SNPs_50027 0 0 1 0 0 Endoplasmic reticulum 0.500231643921179 0 0.8552694 0.000463287842357607 hm5C_site_5347 DeepMRMD:0.8552694;iRNA_m5C:0.000463287842357607 5348 chr5 150847396 150847396 1 + C A BLCA 150847396 + 150847376 150847416 41 CTGGTGCTGCTGGTTTTCATCAGGAACCTCCGAGCCCTGTC CTGGTGCTGCTGGTTTTCATAAGGAACCTCCGAGCCCTGTC Direct Loss 0.947985792973652 0 0.95180905 0 prediction 0.895971585947305 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150847396 chr5:150847396 synonymous SNV . 0 21 hm5C_associated_SNPs_50028 0 0 0 0 1 Endoplasmic reticulum 0.500231643464654 0 0.9036181 0.000463286929308859 hm5C_site_5348 DeepMRMD:0.9036181;iRNA_m5C:0.000463286929308859 5349 chr11 65631361 65631361 1 + C G rs34891773 65631361 + 65631341 65631381 41 GCATCATCGACGGCCGCTTCCGGGAGCAGAAGGTAATTTTG GCATCATCGACGGCCGCTTCGGGGAGCAGAAGGTAATTTTG Direct Loss 0.947984028125915 0 0.94483596 0 prediction 0.89596805625183 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631361 chr11:65631361 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_50029 0 0 1 0 2 Ribosome 0.500231643921092 0 0.88967192 0.000463287842184856 hm5C_site_5349 DeepMRMD:0.88967192;iRNA_m5C:0.000463287842184856 5350 chr22 50615939 50615939 1 + C T GBM 50615939 + 50615919 50615959 41 GCGCTGGGCGCGTCCCCGGACGGGGCGGCAGGTGCGGGGCC GCGCTGGGCGCGTCCCCGGATGGGGCGGCAGGTGCGGGGCC Direct Loss 0.947980403965689 0 0.9230984 0 prediction 0.895960807931377 Functional Loss - PANX2 ENSG00000073150 CDS Human protein_coding chr22:50615939 chr22:50615939 synonymous SNV . 0 21 hm5C_associated_SNPs_50030 0 0 1 0 0 Endoplasmic reticulum 0.500231643909594 0 0.8461968 0.000463287819188363 hm5C_site_5350 DeepMRMD:0.8461968;iRNA_m5C:0.000463287819188363 5351 chr1 156105746 156105746 1 + C T UCEC 156105746 + 156105726 156105766 41 AGGACTCACTGGCCCGTGAGCGGGACACCAGCCGGCGGCTG AGGACTCACTGGCCCGTGAGTGGGACACCAGCCGGCGGCTG Direct Loss 0.947979343228658 0 0.91106457 0 prediction 0.895958686457317 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156105746 chr1:156105746 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_50031 1 0 1 0 1 Cytosol 0.500231643921093 0 0.82212914 0.0004632878421853 hm5C_site_5351 DeepMRMD:0.82212914;iRNA_m5C:0.0004632878421853 not specified not specified 5352 chr8 24193084 24193084 1 + C T COAD 24193084 + 24193064 24193104 41 AATGGCTTCCCTTGCCATCACGGGAAGGGCCACTGCTTGAT AATGGCTTCCCTTGCCATCATGGGAAGGGCCACTGCTTGAT Direct Loss 0.947971797129786 0 0.9145585 0 prediction 0.895943594259571 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24193084 chr8:24193084 synonymous SNV . 0 21 hm5C_associated_SNPs_50032 0 0 0 0 1 exosome 0.500231643920885 0 0.829117 0.000463287841770521 hm5C_site_5352 DeepMRMD:0.829117;iRNA_m5C:0.000463287841770521 5353 chr3 42727695 42727695 1 + C T UCEC 42727695 + 42727675 42727715 41 GAGAAGGAGGAGGCAGTGTTCGAGGCGGTGATGCGGTGGGC GAGAAGGAGGAGGCAGTGTTTGAGGCGGTGATGCGGTGGGC Direct Loss 0.947960394864242 0 0.9288503 0 prediction 0.895920789728484 Functional Loss - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42727695 chr3:42727695 synonymous SNV . 0 21 hm5C_associated_SNPs_50033 0 0 0 0 0 unknown 0.500231643927551 0 0.8577006 0.000463287855102079 hm5C_site_5353 DeepMRMD:0.8577006;iRNA_m5C:0.000463287855102079 5354 chr12 81101799 81101799 1 + C T UCEC 81101799 + 81101779 81101819 41 GGCGAAAAGCCGCCACCCTGCGCGAAAGGAGGAGGCTAAAG GGCGAAAAGCCGCCACCCTGTGCGAAAGGAGGAGGCTAAAG Direct Loss 0.947958214664223 0 0.30888742 0 prediction 0.895916429328446 Functional Loss - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81101799 chr12:81101799 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_50034 0 0 0 0 0 unknown 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5354 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5355 chrX 23801995 23801995 1 + C T SKCM 23801995 + 23801975 23802015 41 GCCGAAAGAGCACTGGACTCCGGAAGGTAACCCCTCGCCCT GCCGAAAGAGCACTGGACTCTGGAAGGTAACCCCTCGCCCT Direct Loss 0.947939885680815 0 0.92296636 0 prediction 0.895879771361631 Functional Loss - SAT1 ENSG00000130066 CDS Human protein_coding chrX:23801995 chrX:23801995 nonsynonymous SNV 0.860 0 21 hm5C_associated_SNPs_50035 0 0 1 0 2 Ribosome 0.500231643921092 0 0.84593272 0.000463287842184856 hm5C_site_5355 DeepMRMD:0.84593272;iRNA_m5C:0.000463287842184856 5356 chr3 197762812 197762812 1 + C A UCEC 197762812 + 197762792 197762832 41 TCCAGATGAATGGCTGGATTCACGATGGAAACCTGCTCTGC TCCAGATGAATGGCTGGATTAACGATGGAAACCTGCTCTGC Direct Loss 0.947938248816144 0 0.82679176 0 prediction 0.895876497632288 Functional Loss - LMLN ENSG00000185621 CDS Human protein_coding chr3:197762812 chr3:197762812 nonsynonymous SNV 0.980 4 21 hm5C_associated_SNPs_50036 0 0 0 0 0 Endoplasmic reticulum 0.50023888029898 0 0.65358352 0.000477760597960675 hm5C_site_5356 DeepMRMD:0.65358352;iRNA_m5C:0.000477760597960675 5357 chr2 242098736 242098736 1 + C A UCEC 242098736 + 242098716 242098756 41 AGATCAAGAAGATTGAGAATCTGGAGGCGCTAACAGAGCTG AGATCAAGAAGATTGAGAATATGGAGGCGCTAACAGAGCTG Direct Loss 0.94793781338898 0 0.3294543 0 prediction 0.895875626777961 Functional Loss - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242098736 chr2:242098736 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_50037 0 0 1 0 1 Ribosome 0.500231643014948 0 0 0.000463286029895649 hm5C_site_5357 DeepMRMD:0;iRNA_m5C:0.000463286029895649 5358 chr12 65720647 65720647 1 + C A BRCA 65720647 + 65720627 65720667 41 ACTGTAAGGTGGTCTTTTCCCAGCAGGAACTGAGGAAGCGG ACTGTAAGGTGGTCTTTTCCAAGCAGGAACTGAGGAAGCGG Direct Loss 0.947932857348543 0 0.5536446 0 prediction 0.895865714697086 Functional Loss - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65720647 chr12:65720647 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_50038 0 0 0 0 1 Nucleus 0.500231643921092 0 0.1072892 0.000463287842184856 hm5C_site_5358 DeepMRMD:0.1072892;iRNA_m5C:0.000463287842184856 5359 chrX 48688009 48688009 1 + C G SARC 48688009 + 48687989 48688029 41 GTGTGACCTTGTGACCACTGCTGGAGATGCTCATGCCGCTG GTGTGACCTTGTGACCACTGGTGGAGATGCTCATGCCGCTG Direct Loss 0.947932780026316 0 0.44636762 0 prediction 0.895865560052632 Functional Loss - ERAS ENSG00000187682 CDS Human protein_coding chrX:48688009 chrX:48688009 nonsynonymous SNV 0.110 0 21 hm5C_associated_SNPs_50039 0 0 0 0 0 unknown 0.500231643921088 0 0 0.000463287842176641 hm5C_site_5359 DeepMRMD:0;iRNA_m5C:0.000463287842176641 5360 chr8 11566283 11566283 1 + C T rs56348550 11566283 + 11566263 11566303 41 CAGTACGGGCGCGCCGGCTTCGCGGGCTCCTACTCCAGCCC CAGTACGGGCGCGCCGGCTTTGCGGGCTCCTACTCCAGCCC Direct Loss 0.9479306469409 0 0.9112277 0 prediction 0.8958612938818 Functional Loss - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11566283 chr8:11566283 synonymous SNV . 0 21 hm5C_associated_SNPs_50040 1 0 0 0 0 cytosol 0.500231643928065 0 0.8224554 0.000463287856130146 hm5C_site_5360 DeepMRMD:0.8224554;iRNA_m5C:0.000463287856130146 Atrioventricular septal defect 4 Atrioventricular septal defect 4 5361 chr2 14774709 14774709 1 + C G BLCA 14774709 + 14774689 14774729 41 GCCTGCGGCCACCTGGGCCTCAAGAGCGAGGAGATCTGCTG GCCTGCGGCCACCTGGGCCTGAAGAGCGAGGAGATCTGCTG Direct Loss 0.94792849911058 0 0.6808386 0 prediction 0.89585699822116 Functional Loss - FAM84A ENSG00000162981 CDS Human protein_coding chr2:14774709 chr2:14774709 synonymous SNV . 0 21 hm5C_associated_SNPs_50041 0 0 0 0 0 Ribosome 0.500231643957715 0 0.3616772 0.000463287915429822 hm5C_site_5361 DeepMRMD:0.3616772;iRNA_m5C:0.000463287915429822 5362 chr6 28264692 28264692 1 + C G rs3800325 28264692 + 28264672 28264712 41 ACCTCTGTGGGAACTCAGCTCAGGAGACAGTTATGAGCCTC ACCTCTGTGGGAACTCAGCTGAGGAGACAGTTATGAGCCTC Direct Loss 0.947923760852782 0 0.8946778 0 prediction 0.895847521705563 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28264692 chr6:28264692 nonsynonymous SNV 0.086 1 21 hm5C_associated_SNPs_50042 0 0 1 0 2 nucleoplasm 0.500231643921093 0 0.7893556 0.000463287842185078 hm5C_site_5362 DeepMRMD:0.7893556;iRNA_m5C:0.000463287842185078 5363 chr10 104629869 104629869 1 + C T UCEC 104629869 + 104629849 104629889 41 CGGGCAGGTGCTGAAGAGATCGGCAGACCTCCAGACCAACG CGGGCAGGTGCTGAAGAGATTGGCAGACCTCCAGACCAACG Direct Loss 0.947923545692075 0 0.91656756 0 prediction 0.895847091384149 Functional Loss - AS3MT ENSG00000214435 CDS Human protein_coding chr10:104629869 chr10:104629869 nonsynonymous SNV 0.331 2 21 hm5C_associated_SNPs_50043 0 0 1 0 2 Nucleus 0.500231643921092 0 0.83313512 0.000463287842184856 hm5C_site_5363 DeepMRMD:0.83313512;iRNA_m5C:0.000463287842184856 5364 chr5 134190985 134190985 1 + C T UCEC 134190985 + 134190965 134191005 41 TTTGGGGACAACTAAAGCTGCGGGATACAAAGTCAGCCCAG TTTGGGGACAACTAAAGCTGTGGGATACAAAGTCAGCCCAG Direct Loss 0.947918072102786 0 0.93148214 0 prediction 0.895836144205573 Functional Loss - C5orf24 ENSG00000181904 CDS Human protein_coding chr5:134190985 chr5:134190985 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_50044 0 0 1 0 1 chromatin 0.500231643921092 0 0.86296428 0.000463287842184856 hm5C_site_5364 DeepMRMD:0.86296428;iRNA_m5C:0.000463287842184856 5365 chr6 110300380 110300380 1 + C A LUSC 110300380 + 110300360 110300400 41 AGTGGCGGCCGAAGGAGCGGCGGCGGCGGCCACAGCAGCAG AGTGGCGGCCGAAGGAGCGGAGGCGGCGGCCACAGCAGCAG Direct Loss 0.947913295433148 0 0.8578818 0 prediction 0.895826590866296 Functional Loss - GPR6 ENSG00000146360 CDS Human protein_coding chr6:110300380 chr6:110300380 nonsynonymous SNV 0.772 0 21 hm5C_associated_SNPs_50045 0 0 0 0 0 unknown 0.500231643921093 0 0.7157636 0.000463287842185078 hm5C_site_5365 DeepMRMD:0.7157636;iRNA_m5C:0.000463287842185078 5366 chr1 248308963 248308963 1 + C T COAD 248308963 + 248308943 248308983 41 CCTTCTCCTACTGTGGGTCTCGGGAAATAGCCCACTTCTTC CCTTCTCCTACTGTGGGTCTTGGGAAATAGCCCACTTCTTC Direct Loss 0.947913008545808 0 0.91661847 0 prediction 0.895826017091617 Functional Loss - OR2M5 ENSG00000162727 CDS Human protein_coding chr1:248308963 chr1:248308963 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_50046 0 0 0 0 0 unknown 0.500231643921092 0 0.83323694 0.000463287842184856 hm5C_site_5366 DeepMRMD:0.83323694;iRNA_m5C:0.000463287842184856 5367 chr21 33765548 33765548 1 + C A rs567847553 33765548 + 33765528 33765568 41 CGGCATGGGGCGAGCGGACACTCCACGACACCCCCCGCCCC CGGCATGGGGCGAGCGGACAATCCACGACACCCCCCGCCCC Direct Loss 0.947912556666649 0 0.9445876 0 prediction 0.895825113333298 Functional Loss - URB1-AS1 ENSG00000256073 CDS Human lincRNA chr21:33765548 chr21:33765548 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_50047 0 0 0 0 0 Ribosome 0.500231998732646 0 0.8891752 0.000463997465292465 hm5C_site_5367 DeepMRMD:0.8891752;iRNA_m5C:0.000463997465292465 5368 chr21 44871068 44871068 1 + C T rs552217930 44871068 + 44871048 44871088 41 TCTAGGGTACAGTGAGAACACGGGAGAGGACTGAGAGACCG TCTAGGGTACAGTGAGAACATGGGAGAGGACTGAGAGACCG Direct Loss 0.947911837340245 0 0.7062357 0 prediction 0.895823674680489 Functional Loss - LINC00319 ENSG00000188660 ncRNA_exonic Human lincRNA chr21:44871068 chr21:44871068 . . 0 21 hm5C_associated_SNPs_50048 0 0 0 0 0 unknown 0.500231643921093 0 0.4124714 0.000463287842185078 hm5C_site_5368 DeepMRMD:0.4124714;iRNA_m5C:0.000463287842185078 5369 chr11 124959400 124959400 1 + C T rs574838336 124959400 + 124959380 124959420 41 GGGAGGTGTGGAGCGAGAGGCGCGAGCGGGAACCGGGGCTG GGGAGGTGTGGAGCGAGAGGTGCGAGCGGGAACCGGGGCTG Direct Loss 0.947907632368293 0 0.91379225 0 prediction 0.895815264736586 Functional Loss - SLC37A2 ENSG00000203306 ncRNA_exonic Human other chr11:124959400 chr11:124959400 . . 0 21 hm5C_associated_SNPs_50049 0 0 0 0 0 nucleolus 0.500231643628288 0 0.8275845 0.000463287256576406 hm5C_site_5369 DeepMRMD:0.8275845;iRNA_m5C:0.000463287256576406 5370 chr3 129249837 129249837 1 + C A SARC 129249837 + 129249817 129249857 41 ATCATGGGCGTTGCCTTCACCTGGGTCATGGCGCTGGCCTG ATCATGGGCGTTGCCTTCACATGGGTCATGGCGCTGGCCTG Direct Loss 0.947907561533215 0 0.8886845 0 prediction 0.89581512306643 Functional Loss - RHO ENSG00000163914 CDS Human protein_coding chr3:129249837 chr3:129249837 synonymous SNV . 0 21 hm5C_associated_SNPs_50050 2 0 0 0 1 Cytosol 0.500231643762158 0 0.777369 0.000463287524316902 hm5C_site_5370 DeepMRMD:0.777369;iRNA_m5C:0.000463287524316902 Retinitis Pigmentosa, Dominant/Recessive Retinitis Pigmentosa, Dominant/Recessive 5371 chr1 2939237 2939237 1 + C A LUAD 2939237 + 2939217 2939257 41 GCCTCCAAGGACACCCCCATCAAGATCACGGCTCCCCCCGA GCCTCCAAGGACACCCCCATAAAGATCACGGCTCCCCCCGA Direct Loss 0.947886330254817 0 0.11682543 0 prediction 0.895772660509634 Functional Loss - ACTRT2 ENSG00000169717 CDS Human protein_coding chr1:2939237 chr1:2939237 synonymous SNV . 0 21 hm5C_associated_SNPs_50051 0 0 0 0 0 unknown 0.500231643921092 0 0 0.000463287842184856 hm5C_site_5371 DeepMRMD:0;iRNA_m5C:0.000463287842184856 5372 chr10 135368884 135368884 1 + G T SARC 135368884 - 135368864 135368904 41 CTGCCCAAGCCCAGAGCACACAAGAGGAAGAGGCTGGCCCA CTGCCCAAGCCCAGAGCACAAAAGAGGAAGAGGCTGGCCCA Direct Loss 0.947880155603845 0 0.8375876 0 prediction 0.895760311207689 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135368884 chr10:135368884 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_50052 0 0 0 0 2 exosome 0.500231643921092 0 0.6751752 0.000463287842184856 hm5C_site_5372 DeepMRMD:0.6751752;iRNA_m5C:0.000463287842184856 5373 chr3 122869160 122869160 1 + C T CESC 122869160 + 122869140 122869180 41 ACCTGGTGGGGGACAACTTCCGGGAGACCCTGAAGAAGAAG ACCTGGTGGGGGACAACTTCTGGGAGACCCTGAAGAAGAAG Direct Loss 0.947873104708535 0 0.9038441 0 prediction 0.89574620941707 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122869160 chr3:122869160 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_50053 0 0 1 0 2 Endoplasmic reticulum 0.500231645257352 0 0.8076882 0.000463290514704173 hm5C_site_5373 DeepMRMD:0.8076882;iRNA_m5C:0.000463290514704173 5374 chr2 29221040 29221040 1 + C A rs72786173 29221040 + 29221020 29221060 41 GTCCCCGTGGCCGTGTACTGCGGGAGCATCCCTCGGACCAG GTCCCCGTGGCCGTGTACTGAGGGAGCATCCCTCGGACCAG Direct Loss 0.947865109345603 0 0.9291358 0 prediction 0.895730218691206 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29221040 chr2:29221040 stopgain 0.008 0 21 hm5C_associated_SNPs_50054 0 0 0 0 2 unknown 0.50023485921618 0 0.8582716 0.000469718432359656 hm5C_site_5374 DeepMRMD:0.8582716;iRNA_m5C:0.000469718432359656 5375 chrX 118602549 118602549 1 + C T UCEC 118602549 + 118602529 118602569 41 GGCCGCAGCCATCTCCAAGACGGCGGTAGCGCCCATCGAGC GGCCGCAGCCATCTCCAAGATGGCGGTAGCGCCCATCGAGC Direct Loss 0.947861488287653 0 0.89864147 0 prediction 0.895722976575305 Functional Loss - SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118602549 chrX:118602549 nonsynonymous SNV 0.977 3 21 hm5C_associated_SNPs_50055 0 0 1 0 1 Cytosol 0.500231643828574 0 0.79728294 0.000463287657147093 hm5C_site_5375 DeepMRMD:0.79728294;iRNA_m5C:0.000463287657147093 5376 chr7 73638356 73638356 1 + C T STAD 73638356 + 73638336 73638376 41 CCCTCTCTGCAGGTGCCCAGCAGGAGGGCATAGGTGGCCTC CCCTCTCTGCAGGTGCCCAGTAGGAGGGCATAGGTGGCCTC Direct Loss 0.947855534714948 0 0.87435687 0 prediction 0.895711069429897 Functional Loss - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73638356 chr7:73638356 stopgain 0.004 0 21 hm5C_associated_SNPs_50056 0 0 0 0 1 chromatin 0.500231643921251 0 0.74871374 0.000463287842501714 hm5C_site_5376 DeepMRMD:0.74871374;iRNA_m5C:0.000463287842501714 5377 chr17 78092070 78092070 1 + C T rs121907943 78092070 + 78092050 78092090 41 TGACCAAGGGTGGGGAGGCCCGAGGGGAGCTGTTCTGGGAC TGACCAAGGGTGGGGAGGCCTGAGGGGAGCTGTTCTGGGAC Direct Loss 0.947840165415031 0 0.9102343 0 prediction 0.895680330830062 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78092070 chr17:78092070 stopgain 0.021 0 21 hm5C_associated_SNPs_50057 2 0 1 0 2 Endoplasmic reticulum 0.500231643912922 0 0.8204686 0.000463287825843484 hm5C_site_5377 DeepMRMD:0.8204686;iRNA_m5C:0.000463287825843484 Glycogen storage disease, type II Glycogen storage disease, type II 5378 chr11 66743038 66743038 1 + C A COAD 66743038 + 66743018 66743058 41 AGGAGCGGGTGCCGGGGAGCCTGGGGGACACAGAGCAGCTG AGGAGCGGGTGCCGGGGAGCATGGGGGACACAGAGCAGCTG Direct Loss 0.947836794465328 0 0.92763186 0 prediction 0.895673588930655 Functional Loss - C11orf86 ENSG00000173237 CDS Human protein_coding chr11:66743038 chr11:66743038 nonsynonymous SNV 0.700 3 21 hm5C_associated_SNPs_50058 0 0 0 0 1 exosome 0.500230763082541 0 0.85526372 0.000461526165082438 hm5C_site_5378 DeepMRMD:0.85526372;iRNA_m5C:0.000461526165082438 5379 chr8 10555357 10555357 1 + C G OV 10555357 + 10555337 10555377 41 TGGACAGGGACTTGTGGATCCACGAGCAGCAGGTGGCCACA TGGACAGGGACTTGTGGATCGACGAGCAGCAGGTGGCCACA Direct Loss 0.947835656496756 0 0.19067413 0 prediction 0.895671312993512 Functional Loss - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555357 chr8:10555357 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_50059 0 0 0 1 0 unknown 0.500231648147884 0 0 0.000463296295767801 hm5C_site_5379 DeepMRMD:0;iRNA_m5C:0.000463296295767801 5380 chr12 72179782 72179782 1 + C T rs534654143 72179782 + 72179762 72179802 41 AGCTCCACCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCC AGCTCCACCTCCCAGGTTCATGCCATTCTCCTGCCTCAGCC Direct Loss 0.947834730751082 0 0.5272939 0 prediction 0.895669461502165 Functional Loss - RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179782 chr12:72179782 . . 0 21 hm5C_associated_SNPs_50060 0 0 0 0 0 Ribosome 0.500231643921092 0 0.0545878 0.000463287842184856 hm5C_site_5380 DeepMRMD:0.0545878;iRNA_m5C:0.000463287842184856 5381 chr16 87678029 87678029 1 + C G STAD 87678029 + 87678009 87678049 41 GCTGCATCCCGACGCCTCTCCGGCGGTGGCCGGCAGCCCGG GCTGCATCCCGACGCCTCTCGGGCGGTGGCCGGCAGCCCGG Direct Loss 0.947830552967386 0 0.9051838 0 prediction 0.895661105934772 Functional Loss - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87678029 chr16:87678029 nonsynonymous SNV 0.677 0 21 hm5C_associated_SNPs_50061 0 0 0 0 0 chromatin 0.500231621350503 0 0.8103676 0.000463242701005395 hm5C_site_5381 DeepMRMD:0.8103676;iRNA_m5C:0.000463242701005395 5382 chr12 55615564 55615564 1 + C A rs144769420 55615564 + 55615544 55615584 41 ATTGTGGTGTCCCTCTTCTACGGAACAGCCAGTCTGACCTA ATTGTGGTGTCCCTCTTCTAAGGAACAGCCAGTCTGACCTA Direct Loss 0.947828206406215 0 0.41008508 0 prediction 0.89565641281243 Functional Loss - OR10A7 ENSG00000179919 CDS Human protein_coding chr12:55615564 chr12:55615564 stopgain 0.994 0 21 hm5C_associated_SNPs_50062 0 0 0 0 0 unknown 0.500231643931221 0 0 0.000463287862441097 hm5C_site_5382 DeepMRMD:0;iRNA_m5C:0.000463287862441097 5383 chr15 40558592 40558592 1 + C T ESCA 40558592 + 40558572 40558612 41 GCAGCCCTAGCCCTAAGACCCGGGAGAGCAGCCTGAAGCGC GCAGCCCTAGCCCTAAGACCTGGGAGAGCAGCCTGAAGCGC Direct Loss 0.94781759442666 0 0.9049091 0 prediction 0.895635188853319 Functional Loss - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40558592 chr15:40558592 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_50063 0 0 0 0 0 unknown 0.500231643921092 0 0.8098182 0.000463287842184856 hm5C_site_5383 DeepMRMD:0.8098182;iRNA_m5C:0.000463287842184856 5384 chr16 46728390 46728390 1 + C T rs371610666 46728390 + 46728370 46728410 41 TCCCGGACGGGGCGGCTGGCCGGGCGGGGGGGCTGACCCCC TCCCGGACGGGGCGGCTGGCTGGGCGGGGGGGCTGACCCCC Direct Loss 0.947813761341367 0 0.9198638 0 prediction 0.895627522682734 Functional Loss - ORC6 ENSG00000091651 intronic Human protein_coding chr16:46728390 chr16:46728390 . . 0 21 hm5C_associated_SNPs_50064 0 0 0 0 0 Cytosol 0.500231643921116 0 0.8397276 0.000463287842232596 hm5C_site_5384 DeepMRMD:0.8397276;iRNA_m5C:0.000463287842232596 5385 chr19 15198791 15198791 1 + C T UCEC 15198791 + 15198771 15198811 41 GCAGCCCTGGGGAAGCTCATCGGCAAAGTGGCCGTCCCCTG GCAGCCCTGGGGAAGCTCATTGGCAAAGTGGCCGTCCCCTG Direct Loss 0.947813144250252 0 0.5522439 0 prediction 0.895626288500503 Functional Loss - OR1I1 ENSG00000094661 CDS Human protein_coding chr19:15198791 chr19:15198791 synonymous SNV . 0 21 hm5C_associated_SNPs_50065 0 0 0 0 0 unknown 0.500231641225423 0 0.1044878 0.000463282450845703 hm5C_site_5385 DeepMRMD:0.1044878;iRNA_m5C:0.000463282450845703 5386 chr19 16799102 16799102 1 + C T BRCA 16799102 + 16799082 16799122 41 GCGGTGGTGGGCCAGGAGCTCAGCATTCGGCCATGCCCGCC GCGGTGGTGGGCCAGGAGCTTAGCATTCGGCCATGCCCGCC Direct Loss 0.947811662860035 0 0.70155907 0 prediction 0.89562332572007 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16799102 chr19:16799102 stopgain 0.024 0 21 hm5C_associated_SNPs_50066 0 0 0 0 0 Ribosome 0.500231643921092 0 0.40311814 0.000463287842184856 hm5C_site_5386 DeepMRMD:0.40311814;iRNA_m5C:0.000463287842184856 5387 chr1 152749146 152749146 1 + C G BLCA 152749146 + 152749126 152749166 41 TGACTGCTGCAGCCAGCCCTCAGCGGGCTCCAGCTGCTGCG TGACTGCTGCAGCCAGCCCTGAGCGGGCTCCAGCTGCTGCG Direct Loss 0.947806357804613 0 0.8846304 0 prediction 0.895612715609227 Functional Loss - LCE1F ENSG00000240386 CDS Human protein_coding chr1:152749146 chr1:152749146 stopgain 0.004 0 21 hm5C_associated_SNPs_50067 0 0 0 0 0 unknown 0.500231643921029 0 0.7692608 0.000463287842058735 hm5C_site_5387 DeepMRMD:0.7692608;iRNA_m5C:0.000463287842058735 5388 chrX 114425309 114425309 1 + C T COAD 114425309 + 114425289 114425329 41 CGCTCACACGAGGCCCGCAGCGGGGGCCGCTCCACTGATGC CGCTCACACGAGGCCCGCAGTGGGGGCCGCTCCACTGATGC Direct Loss 0.947805861545277 0 0.9428749 0 prediction 0.895611723090555 Functional Loss - RBMXL3 ENSG00000175718 CDS Human protein_coding chrX:114425309 chrX:114425309 synonymous SNV . 0 21 hm5C_associated_SNPs_50068 0 0 0 0 0 exosome 0.500231643829552 0 0.8857498 0.000463287659104861 hm5C_site_5388 DeepMRMD:0.8857498;iRNA_m5C:0.000463287659104861 5389 chr20 30408125 30408125 1 + C T KICH 30408125 + 30408105 30408145 41 AAAGGAGAGGGTGACAGGGGCGGGGGGCCCGCGGAGGGCAG AAAGGAGAGGGTGACAGGGGTGGGGGGCCCGCGGAGGGCAG Direct Loss 0.947797769123421 0 0.9138674 0 prediction 0.895595538246843 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30408125 chr20:30408125 synonymous SNV . 0 21 hm5C_associated_SNPs_50069 0 0 0 0 0 exosome 0.500231643892556 0 0.8277348 0.000463287785111843 hm5C_site_5389 DeepMRMD:0.8277348;iRNA_m5C:0.000463287785111843 5390 chr1 18807851 18807851 1 + C T rs72944731 18807851 + 18807831 18807871 41 GAAAAGGCTCAGGTGAGGAGCGGGGCGGGCAGGGCTCGGAC GAAAAGGCTCAGGTGAGGAGTGGGGCGGGCAGGGCTCGGAC Direct Loss 0.947788304082192 0 0.9222803 0 prediction 0.895576608164385 Functional Loss - KLHDC7A ENSG00000179023 CDS Human protein_coding chr1:18807851 chr1:18807851 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_50070 0 0 0 0 0 Cytosol 0.500231643921092 0 0.8445606 0.000463287842184856 hm5C_site_5390 DeepMRMD:0.8445606;iRNA_m5C:0.000463287842184856 5391 chr19 15905664 15905664 1 + C T rs144567857 15905664 + 15905644 15905684 41 GCCCAAAGGTCCCCAGTCTCCGGAAGGAGACACCTTGATGG GCCCAAAGGTCCCCAGTCTCTGGAAGGAGACACCTTGATGG Direct Loss 0.947785688496848 0 0.44113824 0 prediction 0.895571376993696 Functional Loss - OR10H5 ENSG00000172519 CDS Human protein_coding chr19:15905664 chr19:15905664 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_50071 0 0 0 0 0 unknown 0.500231643921099 0 0 0.000463287842197957 hm5C_site_5391 DeepMRMD:0;iRNA_m5C:0.000463287842197957 5392 chr8 145150812 145150812 1 + C T UCEC 145150812 + 145150792 145150832 41 AGCGCTGGGCATGCTGGCGGCAGGGGGTGCGGGGCTGGCCA AGCGCTGGGCATGCTGGCGGTAGGGGGTGCGGGGCTGGCCA Direct Loss 0.94777596547992 0 0.9081303 0 prediction 0.89555193095984 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150812 chr8:145150812 nonsynonymous SNV 0.983 1 21 hm5C_associated_SNPs_50072 0 0 1 0 1 Ribosome 0.500231643921092 0 0.8162606 0.000463287842184856 hm5C_site_5392 DeepMRMD:0.8162606;iRNA_m5C:0.000463287842184856 5393 chr16 66503684 66503684 1 + C T rs184299677 66503684 + 66503664 66503704 41 ACAGGCAGGCCCGGCTTCAGCGGCACCGCCACCGCCACCAC ACAGGCAGGCCCGGCTTCAGTGGCACCGCCACCGCCACCAC Direct Loss 0.947769589267658 0 0.46830717 0 prediction 0.895539178535316 Functional Loss - BEAN1 ENSG00000166546 CDS Human protein_coding chr16:66503684 chr16:66503684 nonsynonymous SNV 0.967 1 21 hm5C_associated_SNPs_50073 0 0 0 0 1 nucleus 0.500231643920999 0 0 0.000463287841997895 hm5C_site_5393 DeepMRMD:0;iRNA_m5C:0.000463287841997895 5394 chr3 196439648 196439648 1 + C T rs843534 196439648 + 196439628 196439668 41 GAGCCGGAGGAGGTCAGACACTAGAGCCGTGTGCCCTCCTT GAGCCGGAGGAGGTCAGACATTAGAGCCGTGTGCCCTCCTT Direct Loss 0.947762860151989 0 0.79366624 0 prediction 0.895525720303978 Functional Loss - PIGX ENSG00000163964 UTR5 Human protein_coding chr3:196439648 chr3:196439648 . . 0 21 hm5C_associated_SNPs_50074 0 0 0 0 0 Ribosome 0.5002316439211 0 0.58733248 0.000463287842199289 hm5C_site_5394 DeepMRMD:0.58733248;iRNA_m5C:0.000463287842199289 5395 chr16 57789031 57789031 1 + C T STAD 57789031 + 57789011 57789051 41 GCTGAGTTTCACACTTTCAGCTGGAGGTCCTGCCCCGGCCC GCTGAGTTTCACACTTTCAGTTGGAGGTCCTGCCCCGGCCC Direct Loss 0.947761232755736 0 0.9100876 0 prediction 0.895522465511472 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57789031 chr16:57789031 synonymous SNV . 0 21 hm5C_associated_SNPs_50075 0 0 0 0 1 Cytosol 0.500231643921093 0 0.8201752 0.000463287842185078 hm5C_site_5395 DeepMRMD:0.8201752;iRNA_m5C:0.000463287842185078 5396 chr6 41011324 41011324 1 + C T LUAD 41011324 + 41011304 41011344 41 CCTACCTGGTGTGGAAGGACCTGGGAGGGGGCTTGGGGTGG CCTACCTGGTGTGGAAGGACTTGGGAGGGGGCTTGGGGTGG Direct Loss 0.947760037502799 0 0.8882799 0 prediction 0.895520075005598 Functional Loss - TSPO2 ENSG00000112212 CDS Human protein_coding chr6:41011324 chr6:41011324 synonymous SNV . 0 21 hm5C_associated_SNPs_50076 0 0 0 0 1 exosome 0.500231643921092 0 0.7765598 0.000463287842184856 hm5C_site_5396 DeepMRMD:0.7765598;iRNA_m5C:0.000463287842184856 5397 chr16 71660355 71660355 1 + C T ESCA 71660355 + 71660335 71660375 41 ACCGCGACCGGAACCGGGACCGGGAGAGGGAGAGAGAGAGG ACCGCGACCGGAACCGGGACTGGGAGAGGGAGAGAGAGAGG Direct Loss 0.947744470254391 0 0.9038821 0 prediction 0.895488940508783 Functional Loss - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71660355 chr16:71660355 nonsynonymous SNV 0.068 2 21 hm5C_associated_SNPs_50077 0 0 0 0 1 Ribosome 0.500264984195027 0 0.8077642 0.000529968390054814 hm5C_site_5397 DeepMRMD:0.8077642;iRNA_m5C:0.000529968390054814 5398 chr1 152759797 152759797 1 + C A COAD 152759797 + 152759777 152759817 41 TGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCCCCTCCC TGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCCCCTCCC Direct Loss 0.947740416741466 0 0.58977056 0 prediction 0.895480833482933 Functional Loss - LCE1E ENSG00000186226 CDS Human protein_coding chr1:152759797 chr1:152759797 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_50078 0 0 0 0 1 unknown 0.500231643929068 0 0.17954112 0.000463287858136541 hm5C_site_5398 DeepMRMD:0.17954112;iRNA_m5C:0.000463287858136541 5399 chr19 41726605 41726605 1 + C T STAD 41726605 + 41726585 41726625 41 ATCACAGGTGCCCGGGGACTCACGGGCACCCTTCGGTGTCA ATCACAGGTGCCCGGGGACTTACGGGCACCCTTCGGTGTCA Direct Loss 0.947731689790691 0 0.89838254 0 prediction 0.895463379581383 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41726605 chr19:41726605 synonymous SNV . 0 21 hm5C_associated_SNPs_50079 0 0 0 0 1 Nucleus 0.500217345277296 0 0.79676508 0.000434690554591333 hm5C_site_5399 DeepMRMD:0.79676508;iRNA_m5C:0.000434690554591333 5400 chr1 152748857 152748857 1 + C A LUAD 152748857 + 152748837 152748877 41 CCGCCACCGAGATGTCTTGCCAGCAGAGCCAGCAGCAGTGC CCGCCACCGAGATGTCTTGCAAGCAGAGCCAGCAGCAGTGC Direct Loss 0.947728587723321 0 0.5671758 0 prediction 0.895457175446643 Functional Loss - LCE1F ENSG00000240386 CDS Human protein_coding chr1:152748857 chr1:152748857 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_50080 0 0 0 0 0 unknown 0.500243910826194 0 0.1343516 0.00048782165238781 hm5C_site_5400 DeepMRMD:0.1343516;iRNA_m5C:0.00048782165238781 5401 chr3 197025476 197025476 1 + C G rs569635893 197025476 + 197025456 197025496 41 AGAGACAGCGCCTGGCGACCCCGGGGGTAGATCCCCACCGG AGAGACAGCGCCTGGCGACCGCGGGGGTAGATCCCCACCGG Direct Loss 0.947724787324189 0 0.9380189 0 prediction 0.895449574648377 Functional Loss - DLG1-AS1 ENSG00000227375 ncRNA_exonic Human antisense chr3:197025476 chr3:197025476 . . 0 21 hm5C_associated_SNPs_50081 0 0 0 0 1 unknown 0.500231643921092 0 0.8760378 0.000463287842184856 hm5C_site_5401 DeepMRMD:0.8760378;iRNA_m5C:0.000463287842184856 5402 chr16 29675896 29675896 1 + C T UCEC 29675896 + 29675876 29675916 41 TGTGGCGCCGGCGGCAGAAGCGGCGGACTGGGGCCCTCGTG TGTGGCGCCGGCGGCAGAAGTGGCGGACTGGGGCCCTCGTG Direct Loss 0.947717022084794 0 0.9113653 0 prediction 0.895434044169588 Functional Loss - SPN ENSG00000197471 CDS Human protein_coding chr16:29675896 chr16:29675896 nonsynonymous SNV 0.533 3 21 hm5C_associated_SNPs_50082 0 0 1 0 0 chromatin 0.500231643920896 0 0.8227306 0.000463287841791393 hm5C_site_5402 DeepMRMD:0.8227306;iRNA_m5C:0.000463287841791393 5403 chr5 133707165 133707165 1 + C A rs34835090 133707165 + 133707145 133707185 41 GCAGGGTTGTTTGTCAGTCTCGGCGGCGGCGGCGGCGGCGG GCAGGGTTGTTTGTCAGTCTAGGCGGCGGCGGCGGCGGCGG Direct Loss 0.947716607273223 0 0.9285096 0 prediction 0.895433214546446 Functional Loss - UBE2B ENSG00000119048 UTR5 Human protein_coding chr5:133707165 chr5:133707165 . . 0 21 hm5C_associated_SNPs_50083 0 0 1 0 0 Cytosol 0.500231643921092 0 0.8570192 0.000463287842184856 hm5C_site_5403 DeepMRMD:0.8570192;iRNA_m5C:0.000463287842184856 5404 chr8 117950633 117950633 1 + G A COAD 117950633 - 117950613 117950653 41 CTCCAGCAGCGGGCTGGCGGCGAGGGCCTCCTCCTGGATGT CTCCAGCAGCGGGCTGGCGGTGAGGGCCTCCTCCTGGATGT Direct Loss 0.947713550315472 0 0.8665649 0 prediction 0.895427100630944 Functional Loss - AARD ENSG00000205002 CDS Human protein_coding chr8:117950633 chr8:117950633 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_50084 0 0 0 0 0 exosome 0.500231643921092 0 0.7331298 0.000463287842184856 hm5C_site_5404 DeepMRMD:0.7331298;iRNA_m5C:0.000463287842184856 5405 chr1 229431628 229431628 1 + C T UCEC 229431628 + 229431608 229431648 41 AGTTATTACCGAGGCGCGGCCGGGGCTCTCCTCGTCTATGA AGTTATTACCGAGGCGCGGCTGGGGCTCTCCTCGTCTATGA Direct Loss 0.947686076417229 0 0.8961743 0 prediction 0.895372152834458 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431628 chr1:229431628 synonymous SNV . 0 21 hm5C_associated_SNPs_50085 0 0 1 2 2 Ribosome 0.500231686562695 0 0.7923486 0.000463373125390687 hm5C_site_5405 DeepMRMD:0.7923486;iRNA_m5C:0.000463373125390687 5406 chr8 117950650 117950650 1 + G A LUSC 117950650 - 117950630 117950670 41 AGCCGTCGTCTGAGGTCCTCCAGCAGCGGGCTGGCGGCGAG AGCCGTCGTCTGAGGTCCTCTAGCAGCGGGCTGGCGGCGAG Direct Loss 0.947683890325278 0 0.3862249 0 prediction 0.895367780650555 Functional Loss - AARD ENSG00000205002 CDS Human protein_coding chr8:117950650 chr8:117950650 synonymous SNV . 0 21 hm5C_associated_SNPs_50086 0 0 0 0 0 exosome 0.500231643920635 0 0 0.000463287841269366 hm5C_site_5406 DeepMRMD:0;iRNA_m5C:0.000463287841269366 5407 chrX 38262963 38262963 1 + C T KIRC 38262963 + 38262943 38262983 41 ATGATGAGCGCAGCGAAATTCGGAATGCACCTTCAGGCAGC ATGATGAGCGCAGCGAAATTTGGAATGCACCTTCAGGCAGC Direct Loss 0.947681200289321 0 0.9115702 0 prediction 0.895362400578643 Functional Loss - OTC ENSG00000036473 CDS Human protein_coding chrX:38262963 chrX:38262963 synonymous SNV . 0 21 hm5C_associated_SNPs_50087 0 0 0 0 2 exosome 0.500231643921092 0 0.8231404 0.000463287842184856 hm5C_site_5407 DeepMRMD:0.8231404;iRNA_m5C:0.000463287842184856 5408 chr19 3179827 3179827 1 + C T UCEC 3179827 + 3179807 3179847 41 CCGGGCCGTCGAGGCTCACTCCGGAGCTTCCACCACCGACA CCGGGCCGTCGAGGCTCACTTCGGAGCTTCCACCACCGACA Direct Loss 0.94768086220281 0 0.94195926 0 prediction 0.89536172440562 Functional Loss - S1PR4 ENSG00000125910 CDS Human protein_coding chr19:3179827 chr19:3179827 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_50088 0 0 0 0 0 exosome 0.500231643921004 0 0.88391852 0.000463287842007665 hm5C_site_5408 DeepMRMD:0.88391852;iRNA_m5C:0.000463287842007665 5409 chr8 55371758 55371758 1 + C T UCEC 55371758 + 55371738 55371778 41 AGCAGGTGAAGCGGCTGAAGCGGGTGGAGGGCGGCTTCCTG AGCAGGTGAAGCGGCTGAAGTGGGTGGAGGGCGGCTTCCTG Direct Loss 0.947669406746181 0 0.93109107 0 prediction 0.895338813492362 Functional Loss - SOX17 ENSG00000164736 CDS Human protein_coding chr8:55371758 chr8:55371758 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_50089 0 0 0 0 0 Cytosol 0.500231643921092 0 0.86218214 0.000463287842184856 hm5C_site_5409 DeepMRMD:0.86218214;iRNA_m5C:0.000463287842184856 5410 chr3 101395620 101395620 1 + G C CHOL 101395620 - 101395600 101395640 41 ACGTGGTGCGCGGCGGGACTCTGTATTACCAGCGGCGGCAG ACGTGGTGCGCGGCGGGACTGTGTATTACCAGCGGCGGCAG Direct Loss 0.947640841423754 0 0.11755082 0 prediction 0.895281682847509 Functional Loss - ZBTB11 ENSG00000066422 CDS Human protein_coding chr3:101395620 chr3:101395620 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_50090 0 0 1 0 0 Nucleus 0.500231649678416 0 0 0.000463299356832536 hm5C_site_5410 DeepMRMD:0;iRNA_m5C:0.000463299356832536 5411 chrX 49021567 49021567 1 + C T UCEC 49021567 + 49021547 49021587 41 ACATCAACGGAGAGTCAACGCAGGGCCTCACCCATGCCCAG ACATCAACGGAGAGTCAACGTAGGGCCTCACCCATGCCCAG Direct Loss 0.947618889888056 0 0.8992313 0 prediction 0.895237779776112 Functional Loss - MAGIX ENSG00000017621 CDS Human other chrX:49021567 chrX:49021567 stopgain 0.899 0 21 hm5C_associated_SNPs_50091 0 0 0 0 1 nucleus 0.500231643953264 0 0.7984626 0.000463287906528498 hm5C_site_5411 DeepMRMD:0.7984626;iRNA_m5C:0.000463287906528498 5412 chr1 874665 874665 1 + G A rs74047413 874684 + 874664 874704 41 TGCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGAC TACTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGAC < 41bp 1 0.523708190718229 1 0.302308797836304 experiment 0.952583618563543 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874684 chr1:874665 synonymous SNV . 0 2 hm5C_associated_SNPs_2115 0 0 0 0 1 nucleus 1 0.500231643921117 1 0.999536712157766 hm5C_site_5412 DeepMRMD:1;iRNA_m5C:0.999536712157766 5413 chr1 874665 874665 1 + G A rs74047413 874685 + 874665 874705 41 GCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACC ACTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACC < 41bp 1 0.561172960895723 1 0.555486559867859 experiment 0.877654078208554 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874685 chr1:874665 synonymous SNV . 0 1 hm5C_associated_SNPs_2116 0 0 0 0 1 nucleus 1 0.50023164392113 0.889026880264282 0.999536712157741 hm5C_site_5413 DeepMRMD:0.889026880264282;iRNA_m5C:0.999536712157741 5414 chr1 874762 874762 1 + C T rs139437968 874779 + 874759 874799 41 CAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA CAGTGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA < 41bp 1 0.0776400301189291 1 0.0551945269107819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874779 chr1:874762 nonsynonymous SNV 0.960 4 4 hm5C_associated_SNPs_2117 0 0 0 0 2 nucleus 1 0.500231654817324 1 0.999536690365352 hm5C_site_5414 DeepMRMD:1;iRNA_m5C:0.999536690365352 5415 chr1 879317 879317 1 + C T rs7523549 879299 + 879279 879319 41 TCTCTGCAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGT TCTCTGCAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTATGT < 41bp 1 0.536399868217293 1 0.481318861246109 experiment 0.927200263565414 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879299 chr1:879317 synonymous SNV . 0 39 hm5C_associated_SNPs_2118 0 0 1 0 2 nucleus 1 0.500231643811561 1 0.999536712376877 hm5C_site_5415 DeepMRMD:1;iRNA_m5C:0.999536712376877 5416 chr1 879317 879317 1 + C T rs7523549 879305 + 879285 879325 41 CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAG CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTATGTGGCCAG < 41bp 1 0.538402312054196 1 0.10447034239769 experiment 0.923195375891608 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879305 chr1:879317 synonymous SNV . 0 33 hm5C_associated_SNPs_2119 0 0 1 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_5416 DeepMRMD:1;iRNA_m5C:0.999536712157815 5417 chr1 879326 879326 1 + C T rs111371881 879306 + 879286 879326 41 AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGC AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGT < 41bp 1 0.667727497515428 1 0.160157889127731 experiment 0.664545004969145 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879306 chr1:879326 synonymous SNV . 0 41 hm5C_associated_SNPs_2121 0 0 0 0 2 nucleus 1 0.50023164392134 1 0.999536712157321 hm5C_site_5417 DeepMRMD:1;iRNA_m5C:0.999536712157321 5418 chr1 906471 906471 1 + C T rs561397298 906462 + 906442 906482 41 ACCTCCTCCTCACAGGGGTCCTGCGGAGACGAACTCCCCTG ACCTCCTCCTCACAGGGGTCCTGCGGAGATGAACTCCCCTG < 41bp 1 0.57672326865388 1 0.41010707616806 experiment 0.84655346269224 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906462 chr1:906471 synonymous SNV . 0 30 hm5C_associated_SNPs_2123 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_5418 DeepMRMD:1;iRNA_m5C:0.999536712157815 5419 chr1 906472 906472 1 + G A rs201680039 906462 + 906442 906482 41 ACCTCCTCCTCACAGGGGTCCTGCGGAGACGAACTCCCCTG ACCTCCTCCTCACAGGGGTCCTGCGGAGACAAACTCCCCTG < 41bp 1 0.648676818495904 1 0.301619112491608 experiment 0.702646363008192 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906462 chr1:906472 nonsynonymous SNV 0.002 0 31 hm5C_associated_SNPs_2124 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_5419 DeepMRMD:1;iRNA_m5C:0.999536712157815 5420 chr1 949654 949654 1 + A G rs8997 949655 + 949635 949675 41 GCAGCAGCACCTACGAGGTACGGCTGACGCAGACCGTGGCC GCAGCAGCACCTACGAGGTGCGGCTGACGCAGACCGTGGCC < 41bp 1 0.619918165253594 1 0.381407409906387 experiment 0.760163669492812 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ISG15 ENSG00000187608 CDS Human protein_coding chr1:949655 chr1:949654 synonymous SNV . 0 20 hm5C_associated_SNPs_2125 0 0 1 0 0 Ribosome 1 0.500231644008858 1 0.999536711982284 hm5C_site_5420 DeepMRMD:1;iRNA_m5C:0.999536711982284 5421 chr1 977027 977027 1 + G A rs563020089 977045 + 977025 977065 41 GGGGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGG GGAGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGG < 41bp 1 0.104899824576402 1 0.444766014814377 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:977045 chr1:977027 synonymous SNV . 0 3 hm5C_associated_SNPs_2126 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5421 DeepMRMD:1;iRNA_m5C:0.999536712157815 5422 chr1 977028 977028 1 + G T rs138031468 977045 + 977025 977065 41 GGGGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGG GGGTCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGG < 41bp 1 0.105624973364276 1 0.386937767267227 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:977045 chr1:977028 nonsynonymous SNV 0.003 1 4 hm5C_associated_SNPs_2127 2 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5422 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 5423 chr1 978668 978668 1 + G A rs147346337 978683 + 978663 978703 41 GCGACGTGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATG GCGACATGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATG < 41bp 1 0.374486876527865 1 0.1955426633358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:978683 chr1:978668 synonymous SNV . 0 6 hm5C_associated_SNPs_2128 1 0 1 0 1 Endoplasmic reticulum 1 0.50023164906736 1 0.999536701865281 hm5C_site_5423 DeepMRMD:1;iRNA_m5C:0.999536701865281 not specified not specified 5424 chr1 979382 979382 1 + C T rs534519250 979380 + 979360 979400 41 GCAGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCGAGC GCAGACACAGATCGAGGAGGCCTGGGCAGGGCCGTGCGAGC < 41bp 1 0.222928394835252 1 0.493440419435501 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979380 chr1:979382 nonsynonymous SNV 0.761 0 23 hm5C_associated_SNPs_2129 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_5424 DeepMRMD:1;iRNA_m5C:0.999536712157818 5425 chr1 979382 979382 1 + C T rs534519250 979381 + 979361 979401 41 CAGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCGAGCA CAGACACAGATCGAGGAGGCCTGGGCAGGGCCGTGCGAGCA < 41bp 1 0.650635629818767 1 0.419487595558167 experiment 0.698728740362467 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979381 chr1:979382 nonsynonymous SNV 0.761 0 22 hm5C_associated_SNPs_2130 0 0 1 0 0 Endoplasmic reticulum 1 0.500231626808178 1 0.999536746383643 hm5C_site_5425 DeepMRMD:1;iRNA_m5C:0.999536746383643 5426 chr1 979382 979382 1 + C T rs534519250 979391 + 979371 979411 41 TCGAGGAGGCCCGGGCAGGGCCGTGCGAGCAGGGTAGGCCG TCGAGGAGGCCTGGGCAGGGCCGTGCGAGCAGGGTAGGCCG < 41bp 1 0.244809544862663 1 0.442578196525574 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979391 chr1:979382 nonsynonymous SNV 0.761 0 12 hm5C_associated_SNPs_2131 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164446374 1 0.99953671107252 hm5C_site_5426 DeepMRMD:1;iRNA_m5C:0.99953671107252 5427 chr1 979382 979382 1 + C T rs534519250 979392 + 979372 979412 41 CGAGGAGGCCCGGGCAGGGCCGTGCGAGCAGGGTAGGCCGG CGAGGAGGCCTGGGCAGGGCCGTGCGAGCAGGGTAGGCCGG < 41bp 1 0.32418387671615 1 0.609713494777679 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979392 chr1:979382 nonsynonymous SNV 0.761 0 11 hm5C_associated_SNPs_2132 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.780573010444642 0.999536712157815 hm5C_site_5427 DeepMRMD:0.780573010444642;iRNA_m5C:0.999536712157815 5428 chr1 979397 979397 1 + G A rs143324306 979380 + 979360 979400 41 GCAGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCGAGC GCAGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCAAGC < 41bp 1 0.422180976332881 1 0.430829286575317 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979380 chr1:979397 nonsynonymous SNV 0.287 3 38 hm5C_associated_SNPs_2133 1 0 1 0 0 Endoplasmic reticulum 1 0.500231643921108 1 0.999536712157785 hm5C_site_5428 DeepMRMD:1;iRNA_m5C:0.999536712157785 not specified not specified 5429 chr1 979397 979397 1 + G A rs143324306 979381 + 979361 979401 41 CAGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCGAGCA CAGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCAAGCA < 41bp 1 0.388900179920644 1 0.229288667440414 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979381 chr1:979397 nonsynonymous SNV 0.287 3 37 hm5C_associated_SNPs_2134 1 0 1 0 0 Endoplasmic reticulum 1 0.500231643523705 1 0.999536712952589 hm5C_site_5429 DeepMRMD:1;iRNA_m5C:0.999536712952589 not specified not specified 5430 chr1 979397 979397 1 + G A rs143324306 979382 + 979362 979402 41 AGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCGAGCAG AGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCAAGCAG < 41bp 1 0.63174657604807 1 0.773626565933228 experiment 0.736506847903861 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979382 chr1:979397 nonsynonymous SNV 0.287 3 36 hm5C_associated_SNPs_2135 1 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.452746868133544 0.999536712157815 hm5C_site_5430 DeepMRMD:0.452746868133544;iRNA_m5C:0.999536712157815 not specified not specified 5431 chr1 979397 979397 1 + G A rs143324306 979391 + 979371 979411 41 TCGAGGAGGCCCGGGCAGGGCCGTGCGAGCAGGGTAGGCCG TCGAGGAGGCCCGGGCAGGGCCGTGCAAGCAGGGTAGGCCG < 41bp 1 0.274539377492124 1 0.40522426366806 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979391 chr1:979397 nonsynonymous SNV 0.287 3 27 hm5C_associated_SNPs_2136 1 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5431 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 5432 chr1 979397 979397 1 + G A rs143324306 979392 + 979372 979412 41 CGAGGAGGCCCGGGCAGGGCCGTGCGAGCAGGGTAGGCCGG CGAGGAGGCCCGGGCAGGGCCGTGCAAGCAGGGTAGGCCGG < 41bp 1 0.262290733664326 1 0.544510841369629 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979392 chr1:979397 nonsynonymous SNV 0.287 3 26 hm5C_associated_SNPs_2137 1 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.910978317260742 0.999536712157815 hm5C_site_5432 DeepMRMD:0.910978317260742;iRNA_m5C:0.999536712157815 not specified not specified 5433 chr1 984257 984257 1 + C T rs200170414 984264 + 984244 984284 41 CAGTGCTTGGCGCCCCTGTGCCGGCCTTCGAGGGCCGCTCC CAGTGCTTGGCGCTCCTGTGCCGGCCTTCGAGGGCCGCTCC < 41bp 1 0.252973089649904 1 0.47593280673027 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984264 chr1:984257 synonymous SNV . 0 14 hm5C_associated_SNPs_2138 1 0 1 0 1 Endoplasmic reticulum 1 0.500231643917181 1 0.999536712165638 hm5C_site_5433 DeepMRMD:1;iRNA_m5C:0.999536712165638 not specified not specified 5434 chr1 984272 984272 1 + C G rs368555478 984264 + 984244 984284 41 CAGTGCTTGGCGCCCCTGTGCCGGCCTTCGAGGGCCGCTCC CAGTGCTTGGCGCCCCTGTGCCGGCCTTGGAGGGCCGCTCC < 41bp 1 0.276294369418773 1 0.561966240406036 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984264 chr1:984272 nonsynonymous SNV 0.030 4 29 hm5C_associated_SNPs_2139 0 0 1 0 1 Endoplasmic reticulum 1 0.500231652812391 0.876067519187928 0.999536694375218 hm5C_site_5434 DeepMRMD:0.876067519187928;iRNA_m5C:0.999536694375218 5435 chr1 984280 984280 1 + G A rs183686622 984264 + 984244 984284 41 CAGTGCTTGGCGCCCCTGTGCCGGCCTTCGAGGGCCGCTCC CAGTGCTTGGCGCCCCTGTGCCGGCCTTCGAGGGCCACTCC < 41bp 1 0.237115583535867 1 0.46777668595314 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984264 chr1:984280 nonsynonymous SNV 0.080 0 37 hm5C_associated_SNPs_2140 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643926643 1 0.999536712146715 hm5C_site_5435 DeepMRMD:1;iRNA_m5C:0.999536712146715 5436 chr1 984280 984280 1 + G A rs183686622 984297 + 984277 984317 41 GCCGCTCCTTCCTGGCCTTCCCCACTCTCCGCGCCTACCAC GCCACTCCTTCCTGGCCTTCCCCACTCTCCGCGCCTACCAC < 41bp 1 0.105263416241006 1 0.169745862483978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984297 chr1:984280 nonsynonymous SNV 0.080 0 4 hm5C_associated_SNPs_2141 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643899769 1 0.999536712200462 hm5C_site_5436 DeepMRMD:1;iRNA_m5C:0.999536712200462 5437 chr1 984302 984302 1 + T C rs9442391 984297 + 984277 984317 41 GCCGCTCCTTCCTGGCCTTCCCCACTCTCCGCGCCTACCAC GCCGCTCCTTCCTGGCCTTCCCCACCCTCCGCGCCTACCAC < 41bp 1 0.0876106532658748 1 0.344931155443192 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984297 chr1:984302 synonymous SNV . 0 26 hm5C_associated_SNPs_2142 1 0 1 0 1 Endoplasmic reticulum 1 0.500231643928001 1 0.999536712143998 hm5C_site_5437 DeepMRMD:1;iRNA_m5C:0.999536712143998 not specified not specified 5438 chr1 990687 990687 1 + G A rs4308921 990679 + 990659 990699 41 CTCCTGAATCACCCTCGCTCCGTCAGGCGGGACTCGTGTCC CTCCTGAATCACCCTCGCTCCGTCAGGCAGGACTCGTGTCC < 41bp 1 0.393352712346087 1 0.131349325180054 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGRN ENSG00000242590 ncRNA_intronic Human sense_intronic chr1:990679 chr1:990687 . . 0 29 hm5C_associated_SNPs_2143 0 0 1 0 0 Endoplasmic reticulum 1 0.500231647373025 1 0.999536705253951 hm5C_site_5438 DeepMRMD:1;iRNA_m5C:0.999536705253951 5439 chr1 1227288 1227288 1 + C T rs549619477 1227297 + 1227277 1227317 41 GCATGTCCACACGTCTGATGCACCTGTGTACGTGTGTCAAG GCATGTCCACATGTCTGATGCACCTGTGTACGTGTGTCAAG < 41bp 1 0.478457228408254 1 0.0384926795959473 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCNN1D ENSG00000162572 UTR3 Human protein_coding chr1:1227297 chr1:1227288 . . 0 12 hm5C_associated_SNPs_2144 0 0 1 1 0 exosome 1 0.500786435367986 1 0.998427129264028 hm5C_site_5439 DeepMRMD:1;iRNA_m5C:0.998427129264028 5440 chr1 1246360 1246360 1 + T C rs149289867 1246369 + 1246349 1246389 41 GTGAAGACGATTCTGGAGAGCCAAGATCCCCTGGGCAAGCA GTGAAGACGATCCTGGAGAGCCAAGATCCCCTGGGCAAGCA < 41bp 1 0.398863666380352 1 0.252484798431396 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1246369 chr1:1246360 synonymous SNV . 0 12 hm5C_associated_SNPs_2145 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5440 DeepMRMD:1;iRNA_m5C:0.999536712157815 5441 chr1 1246373 1246373 1 + G A rs142154083 1246369 + 1246349 1246389 41 GTGAAGACGATTCTGGAGAGCCAAGATCCCCTGGGCAAGCA GTGAAGACGATTCTGGAGAGCCAAAATCCCCTGGGCAAGCA < 41bp 1 0.471843439938908 1 0.219331979751587 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1246369 chr1:1246373 nonsynonymous SNV 0.162 2 25 hm5C_associated_SNPs_2146 0 0 1 0 2 Ribosome 1 0.500231636190607 1 0.999536727618785 hm5C_site_5441 DeepMRMD:1;iRNA_m5C:0.999536727618785 5442 chr1 1262957 1262957 1 + C T rs140494438 1262964 + 1262944 1262984 41 ACCACCCCTGGGTCGTGCGCCGCGCCGTCACCGTGGCCTTC ACCACCCCTGGGTTGTGCGCCGCGCCGTCACCGTGGCCTTC < 41bp 1 0.520885795413294 1 0.085157722234726 experiment 0.958228409173412 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPTP ENSG00000224051 CDS Human protein_coding chr1:1262964 chr1:1262957 synonymous SNV . 0 14 hm5C_associated_SNPs_2147 0 0 1 0 0 Ribosome 1 0.500232055297015 1 0.99953588940597 hm5C_site_5442 DeepMRMD:1;iRNA_m5C:0.99953588940597 5443 chr1 1262966 1262966 1 + C T rs307349 1262964 + 1262944 1262984 41 ACCACCCCTGGGTCGTGCGCCGCGCCGTCACCGTGGCCTTC ACCACCCCTGGGTCGTGCGCCGTGCCGTCACCGTGGCCTTC < 41bp 1 0.286945371347277 1 0.0773005783557892 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPTP ENSG00000224051 CDS Human protein_coding chr1:1262964 chr1:1262966 synonymous SNV . 0 23 hm5C_associated_SNPs_2148 0 0 0 0 0 Ribosome 1 0.500403684436405 1 0.999192631127191 hm5C_site_5443 DeepMRMD:1;iRNA_m5C:0.999192631127191 5444 chr1 1262979 1262979 1 + G A rs61746802 1262964 + 1262944 1262984 41 ACCACCCCTGGGTCGTGCGCCGCGCCGTCACCGTGGCCTTC ACCACCCCTGGGTCGTGCGCCGCGCCGTCACCGTGACCTTC < 41bp 1 0.491890491752774 1 0.0859303176403046 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPTP ENSG00000224051 CDS Human protein_coding chr1:1262964 chr1:1262979 nonsynonymous SNV 0.707 3 36 hm5C_associated_SNPs_2149 0 0 0 0 0 Ribosome 1 0.500316608743352 1 0.999366782513296 hm5C_site_5444 DeepMRMD:1;iRNA_m5C:0.999366782513296 5445 chr1 1374805 1374805 1 + G C rs2275916 1374813 + 1374793 1374833 41 ACGCAGCTCGCCGCCCTCCCCGCCCCAGAGGAGGCCGGGCC ACGCAGCTCGCCCCCCTCCCCGCCCCAGAGGAGGCCGGGCC < 41bp 1 0.436692100430238 1 0.387280017137527 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VWA1 ENSG00000179403 CDS Human protein_coding chr1:1374813 chr1:1374805 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_2150 0 0 1 0 0 Ribosome 1 0.500231643913002 1 0.999536712173995 hm5C_site_5445 DeepMRMD:1;iRNA_m5C:0.999536712173995 5446 chr1 1375947 1375947 1 + T G rs13683 1375960 + 1375940 1375980 41 ATCTTCTTGCTGTGAGAGGTCTCACCCCGGGCTACCTCCTG ATCTTCTGGCTGTGAGAGGTCTCACCCCGGGCTACCTCCTG < 41bp 1 0.156681240804156 1 0.0648290514945984 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VWA1 ENSG00000179403 UTR3 Human protein_coding chr1:1375960 chr1:1375947 . . 0 8 hm5C_associated_SNPs_2151 0 0 1 0 0 Ribosome 1 0.500231694188469 1 0.999536611623062 hm5C_site_5446 DeepMRMD:1;iRNA_m5C:0.999536611623062 5447 chr1 1413884 1413884 1 + A G rs368365041 1413864 + 1413844 1413884 41 GGTCTGGATTCCTCCAGGGCCTGATCCTGGGTGCAGATGCA GGTCTGGATTCCTCCAGGGCCTGATCCTGGGTGCAGATGCG < 41bp 1 0.34480516767996 1 0.11283266544342 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATAD3B ENSG00000160072 intronic Human protein_coding chr1:1413864 chr1:1413884 . . 0 41 hm5C_associated_SNPs_2152 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_5447 DeepMRMD:1;iRNA_m5C:0.999536712157816 5448 chr1 1413948 1413948 1 + T A rs369198244 1413964 + 1413944 1413984 41 GAGCTGTGCAGACACAGGAGCGGCTGTCAGGCAGTGCCAGC GAGCAGTGCAGACACAGGAGCGGCTGTCAGGCAGTGCCAGC < 41bp 1 0.469148104546038 1 0.109680891036987 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATAD3B ENSG00000160072 intronic Human protein_coding chr1:1413964 chr1:1413948 . . 0 5 hm5C_associated_SNPs_2153 0 0 1 0 0 Ribosome 1 0.500231643812772 1 0.999536712374457 hm5C_site_5448 DeepMRMD:1;iRNA_m5C:0.999536712374457 5449 chr1 1413975 1413975 1 + C T rs113626733 1413964 + 1413944 1413984 41 GAGCTGTGCAGACACAGGAGCGGCTGTCAGGCAGTGCCAGC GAGCTGTGCAGACACAGGAGCGGCTGTCAGGTAGTGCCAGC < 41bp 1 0.463614674127458 1 0.126884967088699 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATAD3B ENSG00000160072 intronic Human protein_coding chr1:1413964 chr1:1413975 . . 0 32 hm5C_associated_SNPs_2154 0 0 0 0 0 Ribosome 1 0.500231643916608 1 0.999536712166784 hm5C_site_5449 DeepMRMD:1;iRNA_m5C:0.999536712166784 5450 chr1 1425667 1425667 1 + T C rs61737193 1425666 + 1425646 1425686 41 GGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCA GGTCCTGGCCAGCAATCTGCCCGAGCAGTTCGACTGTGCCA < 41bp 1 0.344981579822863 1 0.42368295788765 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1425666 chr1:1425667 synonymous SNV . 0 22 hm5C_associated_SNPs_2155 0 0 1 0 1 Ribosome 1 0.500231643921079 1 0.999536712157842 hm5C_site_5450 DeepMRMD:1;iRNA_m5C:0.999536712157842 5451 chr1 1425676 1425676 1 + C G rs61737191 1425666 + 1425646 1425686 41 GGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCA GGTCCTGGCCAGCAATCTGCCTGAGCAGTTGGACTGTGCCA < 41bp 1 0.568681519501866 1 0.29867559671402 experiment 0.862636960996269 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1425666 chr1:1425676 nonsynonymous SNV 0.000 3 31 hm5C_associated_SNPs_2156 0 0 1 0 1 Ribosome 1 0.500231644438433 1 0.999536711123133 hm5C_site_5451 DeepMRMD:1;iRNA_m5C:0.999536711123133 5452 chr1 1431226 1431226 1 + T C rs541175302 1431216 + 1431196 1431236 41 AGGCACTGGCTAGGGAGGGGCAGGCCTCCTTCCTGCCCCTC AGGCACTGGCTAGGGAGGGGCAGGCCTCCTCCCTGCCCCTC < 41bp 1 0.697522963126032 1 0.783941268920898 experiment 0.604954073747937 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATAD3B ENSG00000160072 UTR3 Human protein_coding chr1:1431216 chr1:1431226 . . 0 31 hm5C_associated_SNPs_2157 0 0 0 0 0 Ribosome 1 0.500231643920715 0.432117462158204 0.99953671215857 hm5C_site_5452 DeepMRMD:0.432117462158204;iRNA_m5C:0.99953671215857 5453 chr1 1447550 1447550 1 + T A rs72468212 1447557 + 1447537 1447577 41 TGCGCAGTGGCGGTGACCACCGGCTCGCGGCGCGTGGAGGC TGCGCAGTGGCGGAGACCACCGGCTCGCGGCGCGTGGAGGC < 41bp 1 0.682149038633797 1 0.628396213054657 experiment 0.635701922732406 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATAD3A ENSG00000197785 UTR5 Human protein_coding chr1:1447557 chr1:1447550 . . 0 14 hm5C_associated_SNPs_2158 0 0 1 0 0 Ribosome 1 0.500231644902388 0.743207573890686 0.999536710195224 hm5C_site_5453 DeepMRMD:0.743207573890686;iRNA_m5C:0.999536710195224 5454 chr1 1447816 1447816 1 + G A rs564012773 1447819 + 1447799 1447839 41 GACCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGA GACCCCACCGGCCTGGAACGCGCCGCCAAGGCGGCGCGCGA < 41bp 1 0.696811590446596 1 0.862833023071289 experiment 0.606376819106808 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1447819 chr1:1447816 synonymous SNV . 0 18 hm5C_associated_SNPs_2159 0 0 0 0 1 Ribosome 1 0.500231643921092 0.274333953857422 0.999536712157815 hm5C_site_5454 DeepMRMD:0.274333953857422;iRNA_m5C:0.999536712157815 5455 chr1 1447816 1447816 1 + G A rs564012773 1447821 + 1447801 1447841 41 CCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGC CCCCACCGGCCTGGAACGCGCCGCCAAGGCGGCGCGCGAGC < 41bp 1 0.291927100933397 1 0.288122743368149 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1447821 chr1:1447816 synonymous SNV . 0 16 hm5C_associated_SNPs_2160 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5455 DeepMRMD:1;iRNA_m5C:0.999536712157815 5456 chr1 1447816 1447816 1 + G A rs564012773 1447822 + 1447802 1447842 41 CCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGCT CCCACCGGCCTGGAACGCGCCGCCAAGGCGGCGCGCGAGCT < 41bp 1 0.678636145561736 1 0.843615770339966 experiment 0.642727708876528 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1447822 chr1:1447816 synonymous SNV . 0 15 hm5C_associated_SNPs_2161 0 0 0 0 1 Ribosome 1 0.500231643921379 0.312768459320068 0.999536712157242 hm5C_site_5456 DeepMRMD:0.312768459320068;iRNA_m5C:0.999536712157242 5457 chr1 1469855 1469855 1 + C G rs114679139 1469872 + 1469852 1469892 41 GGGCGCCTGCCAGGGCCAGACCCAGGTGGGGCAGCCTGAAC GGGGGCCTGCCAGGGCCAGACCCAGGTGGGGCAGCCTGAAC < 41bp 1 0.622106162271284 1 0.384013712406158 experiment 0.755787675457431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATAD3A ENSG00000197785 UTR3 Human protein_coding chr1:1469872 chr1:1469855 . . 0 4 hm5C_associated_SNPs_2162 0 0 1 0 0 Ribosome 1 0.500231656424781 1 0.999536687150438 hm5C_site_5457 DeepMRMD:1;iRNA_m5C:0.999536687150438 5458 chr1 1469861 1469861 1 + C T rs116603779 1469872 + 1469852 1469892 41 GGGCGCCTGCCAGGGCCAGACCCAGGTGGGGCAGCCTGAAC GGGCGCCTGTCAGGGCCAGACCCAGGTGGGGCAGCCTGAAC < 41bp 1 0.650228042719886 1 0.27381032705307 experiment 0.699543914560228 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATAD3A ENSG00000197785 UTR3 Human protein_coding chr1:1469872 chr1:1469861 . . 0 10 hm5C_associated_SNPs_2164 0 0 1 0 0 Ribosome 1 0.500231643942065 1 0.99953671211587 hm5C_site_5458 DeepMRMD:1;iRNA_m5C:0.99953671211587 5459 chr1 1552574 1552574 1 + G A rs28475060 1552577 + 1552557 1552597 41 ACTCCATGGCCTGTGGCGTGCCACACACAGCGGCATTTCGG ACTCCATGGCCTGTGGCATGCCACACACAGCGGCATTTCGG < 41bp 1 0.189126505527513 1 0.09310182929039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIB2 ENSG00000197530 intronic Human protein_coding chr1:1552577 chr1:1552574 . . 0 18 hm5C_associated_SNPs_2167 0 0 1 0 0 Ribosome 1 0.500231643920205 1 0.99953671215959 hm5C_site_5459 DeepMRMD:1;iRNA_m5C:0.99953671215959 5460 chr1 1552582 1552582 1 + C A rs189897061 1552577 + 1552557 1552597 41 ACTCCATGGCCTGTGGCGTGCCACACACAGCGGCATTTCGG ACTCCATGGCCTGTGGCGTGCCACAAACAGCGGCATTTCGG < 41bp 1 0.161852054331408 1 0.0940921902656555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIB2 ENSG00000197530 intronic Human protein_coding chr1:1552577 chr1:1552582 . . 0 26 hm5C_associated_SNPs_2168 0 0 1 0 0 Ribosome 1 0.500231643921029 1 0.999536712157942 hm5C_site_5460 DeepMRMD:1;iRNA_m5C:0.999536712157942 5461 chr1 1564858 1564858 1 + G A rs116670248 1564863 + 1564843 1564883 41 CGTGGGCGCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTGG CGTGGGCGCCGCGCCAGGGCCCGAGGCCGCTGAGTGCCTGG < 41bp 1 0.464564993072237 1 0.650409162044525 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564863 chr1:1564858 synonymous SNV . 0 16 hm5C_associated_SNPs_2170 0 0 1 0 1 Ribosome 1 0.500231643917811 0.69918167591095 0.999536712164377 hm5C_site_5461 DeepMRMD:0.69918167591095;iRNA_m5C:0.999536712164377 5462 chr1 1564858 1564858 1 + G A rs116670248 1564864 + 1564844 1564884 41 GTGGGCGCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTGGT GTGGGCGCCGCGCCAGGGCCCGAGGCCGCTGAGTGCCTGGT < 41bp 1 0.597682168768129 1 0.752204895019531 experiment 0.804635662463742 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564864 chr1:1564858 synonymous SNV . 0 15 hm5C_associated_SNPs_2171 0 0 1 0 1 Ribosome 1 0.500231639359193 0.495590209960938 0.999536721281614 hm5C_site_5462 DeepMRMD:0.495590209960938;iRNA_m5C:0.999536721281614 5463 chr1 1564858 1564858 1 + G A rs116670248 1564869 + 1564849 1564889 41 CGCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTGGTGTGCT CGCCGCGCCAGGGCCCGAGGCCGCTGAGTGCCTGGTGTGCT < 41bp 1 0.222085268859501 1 0.151188313961029 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564869 chr1:1564858 synonymous SNV . 0 10 hm5C_associated_SNPs_2172 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_5463 DeepMRMD:1;iRNA_m5C:0.999536712157818 5464 chr1 1564858 1564858 1 + G A rs116670248 1564870 + 1564850 1564890 41 GCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTGGTGTGCTC GCCGCGCCAGGGCCCGAGGCCGCTGAGTGCCTGGTGTGCTC < 41bp 1 0.52722366504779 1 0.422722995281219 experiment 0.945552669904421 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564870 chr1:1564858 synonymous SNV . 0 9 hm5C_associated_SNPs_2173 0 0 1 0 1 Ribosome 1 0.500231692161035 1 0.99953661567793 hm5C_site_5464 DeepMRMD:1;iRNA_m5C:0.99953661567793 5465 chr1 2122062 2122062 1 + C T rs567973770 2122070 + 2122050 2122090 41 AGCTGGCGTGCTCAGCAGAGCTGCCGGGGACGATGTCCCGG AGCTGGCGTGCTTAGCAGAGCTGCCGGGGACGATGTCCCGG < 41bp 1 0.497532429882344 1 0.183924287557602 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAAP20 ENSG00000269554 UTR3 Human other chr1:2122070 chr1:2122062 . . 0 13 hm5C_associated_SNPs_2174 0 0 0 0 0 Cytosol 1 0.500231644447712 1 0.999536711104577 hm5C_site_5465 DeepMRMD:1;iRNA_m5C:0.999536711104577 5466 chr1 2122158 2122158 1 + C T rs553488143 2122170 + 2122150 2122190 41 CAGTGTCCCATCAGAGTGACCATCCCTCACACGCCACTGCT CAGTGTCCTATCAGAGTGACCATCCCTCACACGCCACTGCT < 41bp 1 0.0776871161000089 1 0.0682142078876495 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAAP20 ENSG00000269554 UTR3 Human other chr1:2122170 chr1:2122158 . . 0 9 hm5C_associated_SNPs_2175 0 0 0 0 0 Cytosol 1 0.500231643921113 1 0.999536712157773 hm5C_site_5466 DeepMRMD:1;iRNA_m5C:0.999536712157773 5467 chr1 2122172 2122172 1 + T A rs149013327 2122170 + 2122150 2122190 41 CAGTGTCCCATCAGAGTGACCATCCCTCACACGCCACTGCT CAGTGTCCCATCAGAGTGACCAACCCTCACACGCCACTGCT < 41bp 1 0.167898443257794 1 0.0890505909919739 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAAP20 ENSG00000269554 UTR3 Human other chr1:2122170 chr1:2122172 . . 0 23 hm5C_associated_SNPs_2176 0 0 0 0 0 Cytosol 1 0.500231643909926 1 0.999536712180149 hm5C_site_5467 DeepMRMD:1;iRNA_m5C:0.999536712180149 5468 chr1 2160676 2160676 1 + G A rs569206617 2160685 + 2160665 2160705 41 ACGGCCGACCAGCTGGAGATCCTCAAAGTCATGGGCATCCT ACGGCCGACCAACTGGAGATCCTCAAAGTCATGGGCATCCT < 41bp 1 0.183881537417263 1 0.0284508764743805 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKI ENSG00000157933 CDS Human protein_coding chr1:2160685 chr1:2160676 synonymous SNV . 0 12 hm5C_associated_SNPs_2177 2 0 1 0 0 Endoplasmic reticulum 1 0.500231643920904 1 0.999536712158191 hm5C_site_5468 DeepMRMD:1;iRNA_m5C:0.999536712158191 Shprintzen-Goldberg syndrome Shprintzen-Goldberg syndrome 5469 chr1 2240448 2240448 1 + C T rs577306431 2240437 + 2240417 2240457 41 CCCACCCTTTCCTGCAGCTGCCAGGCCCGTGCGGTCAGTGG CCCACCCTTTCCTGCAGCTGCCAGGCCCGTGTGGTCAGTGG < 41bp 1 0.469693637091355 1 0.400444954633713 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SKI ENSG00000157933 UTR3 Human protein_coding chr1:2240437 chr1:2240448 . . 0 32 hm5C_associated_SNPs_2179 0 0 1 0 0 Endoplasmic reticulum 1 0.5002316438988 1 0.9995367122024 hm5C_site_5469 DeepMRMD:1;iRNA_m5C:0.9995367122024 5470 chr1 2240448 2240448 1 + C T rs577306431 2240444 + 2240424 2240464 41 TTTCCTGCAGCTGCCAGGCCCGTGCGGTCAGTGGGACCCGG TTTCCTGCAGCTGCCAGGCCCGTGTGGTCAGTGGGACCCGG < 41bp 1 0.460792566066322 1 0.0885523855686188 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SKI ENSG00000157933 UTR3 Human protein_coding chr1:2240444 chr1:2240448 . . 0 25 hm5C_associated_SNPs_2180 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164392112 1 0.99953671215776 hm5C_site_5470 DeepMRMD:1;iRNA_m5C:0.99953671215776 5471 chr1 2240449 2240449 1 + G A rs546360013 2240437 + 2240417 2240457 41 CCCACCCTTTCCTGCAGCTGCCAGGCCCGTGCGGTCAGTGG CCCACCCTTTCCTGCAGCTGCCAGGCCCGTGCAGTCAGTGG < 41bp 1 0.446800277243362 1 0.386055886745453 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SKI ENSG00000157933 UTR3 Human protein_coding chr1:2240437 chr1:2240449 . . 0 33 hm5C_associated_SNPs_2181 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643898854 1 0.999536712202292 hm5C_site_5471 DeepMRMD:1;iRNA_m5C:0.999536712202292 5472 chr1 2240449 2240449 1 + G A rs546360013 2240444 + 2240424 2240464 41 TTTCCTGCAGCTGCCAGGCCCGTGCGGTCAGTGGGACCCGG TTTCCTGCAGCTGCCAGGCCCGTGCAGTCAGTGGGACCCGG < 41bp 1 0.332567919684349 1 0.209518700838089 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SKI ENSG00000157933 UTR3 Human protein_coding chr1:2240444 chr1:2240449 . . 0 26 hm5C_associated_SNPs_2182 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5472 DeepMRMD:1;iRNA_m5C:0.999536712157815 5473 chr1 2240449 2240449 1 + G A rs546360013 2240448 + 2240428 2240468 41 CTGCAGCTGCCAGGCCCGTGCGGTCAGTGGGACCCGGACGT CTGCAGCTGCCAGGCCCGTGCAGTCAGTGGGACCCGGACGT < 41bp 1 0.430558517789686 1 0.119547188282013 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SKI ENSG00000157933 UTR3 Human protein_coding chr1:2240448 chr1:2240449 . . 0 22 hm5C_associated_SNPs_2183 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5473 DeepMRMD:1;iRNA_m5C:0.999536712157815 5474 chr1 2240454 2240454 1 + G C rs78207415 2240437 + 2240417 2240457 41 CCCACCCTTTCCTGCAGCTGCCAGGCCCGTGCGGTCAGTGG CCCACCCTTTCCTGCAGCTGCCAGGCCCGTGCGGTCACTGG < 41bp 1 0.469221826152494 1 0.411744832992554 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SKI ENSG00000157933 UTR3 Human protein_coding chr1:2240437 chr1:2240454 . . 0 38 hm5C_associated_SNPs_2184 0 0 1 0 0 Endoplasmic reticulum 1 0.500231770882746 1 0.999536458234508 hm5C_site_5474 DeepMRMD:1;iRNA_m5C:0.999536458234508 5475 chr1 2240454 2240454 1 + G C rs78207415 2240444 + 2240424 2240464 41 TTTCCTGCAGCTGCCAGGCCCGTGCGGTCAGTGGGACCCGG TTTCCTGCAGCTGCCAGGCCCGTGCGGTCACTGGGACCCGG < 41bp 1 0.405093403143018 1 0.0928599834442139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SKI ENSG00000157933 UTR3 Human protein_coding chr1:2240444 chr1:2240454 . . 0 31 hm5C_associated_SNPs_2185 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164799322 1 0.999536704013561 hm5C_site_5475 DeepMRMD:1;iRNA_m5C:0.999536704013561 5476 chr1 2240454 2240454 1 + G C rs78207415 2240448 + 2240428 2240468 41 CTGCAGCTGCCAGGCCCGTGCGGTCAGTGGGACCCGGACGT CTGCAGCTGCCAGGCCCGTGCGGTCACTGGGACCCGGACGT < 41bp 1 0.43566348954742 1 0.395368099212646 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SKI ENSG00000157933 UTR3 Human protein_coding chr1:2240448 chr1:2240454 . . 0 27 hm5C_associated_SNPs_2186 0 0 1 0 0 Endoplasmic reticulum 1 0.500231789661873 1 0.999536420676253 hm5C_site_5476 DeepMRMD:1;iRNA_m5C:0.999536420676253 5477 chr1 2240454 2240454 1 + G C rs78207415 2240452 + 2240432 2240472 41 AGCTGCCAGGCCCGTGCGGTCAGTGGGACCCGGACGTGGGC AGCTGCCAGGCCCGTGCGGTCACTGGGACCCGGACGTGGGC < 41bp 1 0.691238809840458 1 0.148169636726379 experiment 0.617522380319084 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKI ENSG00000157933 UTR3 Human protein_coding chr1:2240452 chr1:2240454 . . 0 23 hm5C_associated_SNPs_2187 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644732673 1 0.999536710534654 hm5C_site_5477 DeepMRMD:1;iRNA_m5C:0.999536710534654 5478 chr1 3329152 3329152 1 + C A rs370931714 3329165 + 3329145 3329185 41 CCGCATCCGGCGAGGAGCAGCCGCTGGACCTGAGCATCGGC CCGCATCAGGCGAGGAGCAGCCGCTGGACCTGAGCATCGGC < 41bp 1 0.253355848120245 1 0.220995783805847 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3329165 chr1:3329152 synonymous SNV . 0 8 hm5C_associated_SNPs_2189 0 0 0 0 0 Nucleus 1 0.500231643921216 1 0.999536712157567 hm5C_site_5478 DeepMRMD:1;iRNA_m5C:0.999536712157567 5479 chr1 3350407 3350407 1 + G A rs200223220 3350395 + 3350375 3350415 41 ACGGGCTGGGCAGCCGGGGGCCGGTGGCCAGAGCGAGGGCA ACGGGCTGGGCAGCCGGGGGCCGGTGGCCAGAACGAGGGCA < 41bp 1 0.52051867740606 1 0.515851438045502 experiment 0.95896264518788 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 UTR3 Human protein_coding chr1:3350395 chr1:3350407 . . 0 33 hm5C_associated_SNPs_2190 0 0 0 0 0 Nucleus 1 0.500231643949818 0.968297123908996 0.999536712100364 hm5C_site_5479 DeepMRMD:0.968297123908996;iRNA_m5C:0.999536712100364 5480 chr1 3350409 3350409 1 + G A rs3748837 3350395 + 3350375 3350415 41 ACGGGCTGGGCAGCCGGGGGCCGGTGGCCAGAGCGAGGGCA ACGGGCTGGGCAGCCGGGGGCCGGTGGCCAGAGCAAGGGCA < 41bp 1 0.484042964599698 1 0.545735657215118 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 UTR3 Human protein_coding chr1:3350395 chr1:3350409 . . 0 35 hm5C_associated_SNPs_2191 0 0 0 0 0 Nucleus 1 0.500231643929879 0.908528685569764 0.999536712140243 hm5C_site_5480 DeepMRMD:0.908528685569764;iRNA_m5C:0.999536712140243 5481 chr1 3351121 3351121 1 + C G rs114512351 3351105 + 3351085 3351125 41 CAAGAGGCGCGGGGCCACACCCGTGAACCATGCAGACGGCC CAAGAGGCGCGGGGCCACACCCGTGAACCATGCAGAGGGCC < 41bp 1 0.192782753728917 1 0.414796650409698 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 UTR3 Human protein_coding chr1:3351105 chr1:3351121 . . 0 37 hm5C_associated_SNPs_2192 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_5481 DeepMRMD:1;iRNA_m5C:0.999536712157815 5482 chr1 3351125 3351125 1 + C G rs552525263 3351105 + 3351085 3351125 41 CAAGAGGCGCGGGGCCACACCCGTGAACCATGCAGACGGCC CAAGAGGCGCGGGGCCACACCCGTGAACCATGCAGACGGCG < 41bp 1 0.204471940100237 1 0.347233325242996 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 UTR3 Human protein_coding chr1:3351105 chr1:3351125 . . 0 41 hm5C_associated_SNPs_2193 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_5482 DeepMRMD:1;iRNA_m5C:0.999536712157815 5483 chr1 3397447 3397447 1 + C T rs34963382 3397456 + 3397436 3397476 41 TCCCCACTGCACCCAGGGGGCAACTCCACCTGGACTGATGG TCCCCACTGCATCCAGGGGGCAACTCCACCTGGACTGATGG < 41bp 1 0.338921324882864 1 0.128659337759018 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF16 ENSG00000130762 UTR3 Human protein_coding chr1:3397456 chr1:3397447 . . 0 12 hm5C_associated_SNPs_2194 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5483 DeepMRMD:1;iRNA_m5C:0.999536712157815 5484 chr1 3397455 3397455 1 + G A rs1051515 3397456 + 3397436 3397476 41 TCCCCACTGCACCCAGGGGGCAACTCCACCTGGACTGATGG TCCCCACTGCACCCAGGGGACAACTCCACCTGGACTGATGG < 41bp 1 0.380928652230962 1 0.103539526462555 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF16 ENSG00000130762 UTR3 Human protein_coding chr1:3397456 chr1:3397455 . . 0 20 hm5C_associated_SNPs_2195 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_5484 DeepMRMD:1;iRNA_m5C:0.999536712157816 5485 chr1 3651512 3651512 1 + T C rs575653856 3651497 + 3651477 3651517 41 TCCAGCTGAAGGGCAGGAAGCTCTGGCCGCTTAGCTTCTAG TCCAGCTGAAGGGCAGGAAGCTCTGGCCGCTTAGCCTCTAG < 41bp 1 0.617101732813905 1 0.461638540029526 experiment 0.76579653437219 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TP73 ENSG00000078900 UTR3 Human protein_coding chr1:3651497 chr1:3651512 . . 0 36 hm5C_associated_SNPs_2197 0 0 0 0 0 chromatin 1 0.500231639316302 1 0.999536721367396 hm5C_site_5485 DeepMRMD:1;iRNA_m5C:0.999536721367396 5486 chr1 6159665 6159665 1 + G A rs115846477 6159666 + 6159646 6159686 41 CCGCCCGCCAGCCCAGGCCGCTGCTCTGCACCGAGCTGGTG CCGCCCGCCAGCCCAGGCCACTGCTCTGCACCGAGCTGGTG < 41bp 1 0.388410448439245 1 0.0475032925605774 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNAB2 ENSG00000069424 UTR3 Human protein_coding chr1:6159666 chr1:6159665 . . 0 20 hm5C_associated_SNPs_2198 0 0 1 0 0 Ribosome 1 0.500231665252954 1 0.999536669494092 hm5C_site_5486 DeepMRMD:1;iRNA_m5C:0.999536669494092 5487 chr1 6159681 6159681 1 + C T rs556775976 6159666 + 6159646 6159686 41 CCGCCCGCCAGCCCAGGCCGCTGCTCTGCACCGAGCTGGTG CCGCCCGCCAGCCCAGGCCGCTGCTCTGCACCGAGTTGGTG < 41bp 1 0.318095186604788 1 0.0330247581005096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNAB2 ENSG00000069424 UTR3 Human protein_coding chr1:6159666 chr1:6159681 . . 0 36 hm5C_associated_SNPs_2199 0 0 0 0 0 Ribosome 1 0.500226025458446 1 0.999547949083107 hm5C_site_5487 DeepMRMD:1;iRNA_m5C:0.999547949083107 5488 chr1 6271125 6271125 1 + A G rs1052598 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCCGCTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG < 41bp 1 0.40108826475609 1 0.331417262554169 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271125 synonymous SNV . 0 4 hm5C_associated_SNPs_2200 0 0 1 0 2 Nucleus 1 0.500231643945052 1 0.999536712109896 hm5C_site_5488 DeepMRMD:1;iRNA_m5C:0.999536712109896 5489 chr1 6681811 6681811 1 + A G rs78180692 6681810 + 6681790 6681830 41 TGGTGCGGGCAGATCCCTGCCATTTAGGTGCCTAAGCAAAA TGGTGCGGGCAGATCCCTGCCGTTTAGGTGCCTAAGCAAAA < 41bp 1 0.0758840314516132 1 0.0895788669586182 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHF13 ENSG00000116273 UTR3 Human protein_coding chr1:6681810 chr1:6681811 . . 0 22 hm5C_associated_SNPs_2201 0 0 1 0 0 cytosol 1 0.500231643874888 1 0.999536712250224 hm5C_site_5489 DeepMRMD:1;iRNA_m5C:0.999536712250224 5490 chr1 6947963 6947963 1 + G A rs138999762 6947961 + 6947941 6947981 41 GTGACCTACTCTTGCCTCATCCGGAGTTATTACGAAGGAGC GTGACCTACTCTTGCCTCATCCAGAGTTATTACGAAGGAGC < 41bp 1 0.116634958607335 1 0.758460164070129 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122261;BS-seq with improved protocol;Hela;Control CAMTA1 ENSG00000171735 UTR3 Human protein_coding chr1:6947961 chr1:6947963 . . 0 23 hm5C_associated_SNPs_2205 0 0 1 0 0 Cytosol 1 0.500231643976008 0.483079671859742 0.999536712047984 hm5C_site_5490 DeepMRMD:0.483079671859742;iRNA_m5C:0.999536712047984 5491 chr1 6947973 6947973 1 + C T rs3827726 6947961 + 6947941 6947981 41 GTGACCTACTCTTGCCTCATCCGGAGTTATTACGAAGGAGC GTGACCTACTCTTGCCTCATCCGGAGTTATTATGAAGGAGC < 41bp 1 0.171396955241337 1 0.742961227893829 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122261;BS-seq with improved protocol;Hela;Control CAMTA1 ENSG00000171735 UTR3 Human protein_coding chr1:6947961 chr1:6947973 . . 0 33 hm5C_associated_SNPs_2206 0 0 1 0 0 Cytosol 1 0.500231643921332 0.514077544212342 0.999536712157336 hm5C_site_5491 DeepMRMD:0.514077544212342;iRNA_m5C:0.999536712157336 5492 chr1 9324133 9324133 1 + G A rs201056307 9324137 + 9324117 9324157 41 TTTCCCAGCAGCAGCCGGAGCAGCTGGTGCCAGGGCCAGGG TTTCCCAGCAGCAGCCAGAGCAGCTGGTGCCAGGGCCAGGG < 41bp 1 0.494924038574171 1 0.469828337430954 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control H6PD ENSG00000049239 CDS Human protein_coding chr1:9324137 chr1:9324133 synonymous SNV . 0 17 hm5C_associated_SNPs_2207 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5492 DeepMRMD:1;iRNA_m5C:0.999536712157815 5493 chr1 9325265 9325265 1 + C A rs9435159 9325247 + 9325227 9325267 41 ACCAGCACAACACGGGATGGCGCCCAAACTCCGGCGTTCAC ACCAGCACAACACGGGATGGCGCCCAAACTCCGGCGTTAAC < 41bp 1 0.17982832808804 1 0.128338545560837 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control H6PD ENSG00000049239 UTR3 Human protein_coding chr1:9325247 chr1:9325265 . . 0 39 hm5C_associated_SNPs_2208 0 0 1 0 0 Ribosome 1 0.500231644125 1 0.999536711749999 hm5C_site_5493 DeepMRMD:1;iRNA_m5C:0.999536711749999 5494 chr1 9329364 9329364 1 + G A rs61744613 9329345 + 9329325 9329365 41 CATTCCCTCTCTCCGCAACTCTCCCGTGAGGCTGCACCCGT CATTCCCTCTCTCCGCAACTCTCCCGTGAGGCTGCACCCAT < 41bp 1 0.407318894963324 1 0.273618936538696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control H6PD ENSG00000049239 UTR3 Human protein_coding chr1:9329345 chr1:9329364 . . 0 40 hm5C_associated_SNPs_2210 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5494 DeepMRMD:1;iRNA_m5C:0.999536712157815 5495 chr1 9329364 9329364 1 + G A rs61744613 9329362 + 9329342 9329382 41 ACTCTCCCGTGAGGCTGCACCCGTGTGGGTAGCACTGGAAG ACTCTCCCGTGAGGCTGCACCCATGTGGGTAGCACTGGAAG < 41bp 1 0.173612886882788 1 0.139590084552765 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H6PD ENSG00000049239 UTR3 Human protein_coding chr1:9329362 chr1:9329364 . . 0 23 hm5C_associated_SNPs_2211 0 0 1 0 0 Ribosome 1 0.500231644563048 1 0.999536710873904 hm5C_site_5495 DeepMRMD:1;iRNA_m5C:0.999536710873904 5496 chr1 9416003 9416003 1 + C T rs145906145 9415999 + 9415979 9416019 41 AGACTGTGGACATGAGGGACCCCACGTACAGGCCCCTGAAG AGACTGTGGACATGAGGGACCCCATGTACAGGCCCCTGAAG < 41bp 1 0.172156390708846 1 0.112817615270615 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPSB1 ENSG00000171621 CDS Human protein_coding chr1:9415999 chr1:9416003 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_2212 0 0 1 0 0 nucleus 1 0.500231595805192 1 0.999536808389616 hm5C_site_5496 DeepMRMD:1;iRNA_m5C:0.999536808389616 5497 chr1 9670738 9670738 1 + C A rs114072438 9670727 + 9670707 9670747 41 GGACAGAAGCTGCTGCTGTTCCCGTCACCCCCTGGAGAGGC GGACAGAAGCTGCTGCTGTTCCCGTCACCCCATGGAGAGGC < 41bp 1 0.425179276820001 1 0.126682281494141 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9670727 chr1:9670738 nonsynonymous SNV 0.005 1 32 hm5C_associated_SNPs_2213 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5497 DeepMRMD:1;iRNA_m5C:0.999536712157815 5498 chr1 10043035 10043035 1 + G A rs372965857 10043032 + 10043012 10043052 41 AAATTAGCTGTGTGTGGTGGCACGTGCCTGTAGTCCCAGCT AAATTAGCTGTGTGTGGTGGCACATGCCTGTAGTCCCAGCT < 41bp 1 0.330640545775381 1 0.465344607830048 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NMNAT1 ENSG00000173614 UTR3 Human protein_coding chr1:10043032 chr1:10043035 . . 0 24 hm5C_associated_SNPs_2214 0 0 0 0 0 Nucleus 1 0.500231729515162 1 0.999536540969676 hm5C_site_5498 DeepMRMD:1;iRNA_m5C:0.999536540969676 5499 chr1 10043035 10043035 1 + G A rs372965857 10043034 + 10043014 10043054 41 ATTAGCTGTGTGTGGTGGCACGTGCCTGTAGTCCCAGCTAC ATTAGCTGTGTGTGGTGGCACATGCCTGTAGTCCCAGCTAC < 41bp 1 0.406791054502198 1 0.267853796482086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NMNAT1 ENSG00000173614 UTR3 Human protein_coding chr1:10043034 chr1:10043035 . . 0 22 hm5C_associated_SNPs_2215 0 0 0 0 0 Nucleus 1 0.500231646219413 1 0.999536707561173 hm5C_site_5499 DeepMRMD:1;iRNA_m5C:0.999536707561173 5500 chr1 10367443 10367443 1 + C T rs145733356 10367446 + 10367426 10367466 41 GGCACAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTC GGCACAATCTCAGCTCATTGCAACCTCTGCCTCCTGGGTTC < 41bp 1 0.122592414535259 1 0.123289108276367 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367446 chr1:10367443 . . 0 18 hm5C_associated_SNPs_2216 0 0 0 0 0 Cytosol 1 0.500231643920547 1 0.999536712158906 hm5C_site_5500 DeepMRMD:1;iRNA_m5C:0.999536712158906 5501 chr1 10367443 10367443 1 + C T rs145733356 10367449 + 10367429 10367469 41 ACAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAG ACAATCTCAGCTCATTGCAACCTCTGCCTCCTGGGTTCAAG < 41bp 1 0.0111048510657673 1 0.0403489768505096 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367449 chr1:10367443 . . 0 15 hm5C_associated_SNPs_2217 0 0 0 0 0 Cytosol 1 0.500231668187921 1 0.999536663624159 hm5C_site_5501 DeepMRMD:1;iRNA_m5C:0.999536663624159 5502 chr1 10367443 10367443 1 + C T rs145733356 10367450 + 10367430 10367470 41 CAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGC CAATCTCAGCTCATTGCAACCTCTGCCTCCTGGGTTCAAGC < 41bp 1 0.0681997298825999 1 0.147283911705017 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367450 chr1:10367443 . . 0 14 hm5C_associated_SNPs_2218 0 0 0 0 0 Cytosol 1 0.50023395572478 1 0.999532088550439 hm5C_site_5502 DeepMRMD:1;iRNA_m5C:0.999532088550439 5503 chr1 10367443 10367443 1 + C T rs145733356 10367452 + 10367432 10367472 41 ATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAA ATCTCAGCTCATTGCAACCTCTGCCTCCTGGGTTCAAGCAA < 41bp 1 0.158882959282443 1 0.239476710557938 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367452 chr1:10367443 . . 0 12 hm5C_associated_SNPs_2219 0 0 0 0 0 Cytosol 1 0.500231672513681 1 0.999536654972638 hm5C_site_5503 DeepMRMD:1;iRNA_m5C:0.999536654972638 5504 chr1 10367443 10367443 1 + C T rs145733356 10367455 + 10367435 10367475 41 TCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTC TCAGCTCATTGCAACCTCTGCCTCCTGGGTTCAAGCAATTC < 41bp 1 0.00575628919885893 1 0.062895804643631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367455 chr1:10367443 . . 0 9 hm5C_associated_SNPs_2220 0 0 0 0 0 Cytosol 1 0.500231644126495 1 0.99953671174701 hm5C_site_5504 DeepMRMD:1;iRNA_m5C:0.99953671174701 5505 chr1 10367443 10367443 1 + C T rs145733356 10367456 + 10367436 10367476 41 CAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCT CAGCTCATTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCT < 41bp 1 0.104860841184539 1 0.427605926990509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367456 chr1:10367443 . . 0 8 hm5C_associated_SNPs_2221 0 0 0 0 0 Cytosol 1 0.500231643921131 1 0.999536712157739 hm5C_site_5505 DeepMRMD:1;iRNA_m5C:0.999536712157739 5506 chr1 10367443 10367443 1 + C T rs145733356 10367458 + 10367438 10367478 41 GCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCC GCTCATTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCC < 41bp 1 0.10736356349331 1 0.347604542970657 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367458 chr1:10367443 . . 0 6 hm5C_associated_SNPs_2222 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_5506 DeepMRMD:1;iRNA_m5C:0.999536712157815 5507 chr1 10367591 10367591 1 + T C rs1065828 10367609 + 10367589 10367629 41 AATTCCTAACCTCAGGTGATCCACCTGCCTTGGCCTCCCAA AACTCCTAACCTCAGGTGATCCACCTGCCTTGGCCTCCCAA < 41bp 1 0.0233231587954297 1 0.161479949951172 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367609 chr1:10367591 . . 0 3 hm5C_associated_SNPs_2223 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_5507 DeepMRMD:1;iRNA_m5C:0.999536712157815 5508 chr1 10367591 10367591 1 + T C rs1065828 10367610 + 10367590 10367630 41 ATTCCTAACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAA ACTCCTAACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAA < 41bp 1 0.229688759957663 1 0.128813892602921 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367610 chr1:10367591 . . 0 2 hm5C_associated_SNPs_2224 0 0 1 0 0 Cytosol 1 0.500231644089321 1 0.999536711821359 hm5C_site_5508 DeepMRMD:1;iRNA_m5C:0.999536711821359 5509 chr1 10367633 10367633 1 + G A rs193222943 10367613 + 10367593 10367633 41 CCTAACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTG CCTAACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTA < 41bp 1 0.176959871466728 1 0.244751214981079 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367613 chr1:10367633 . . 0 41 hm5C_associated_SNPs_2225 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_5509 DeepMRMD:1;iRNA_m5C:0.999536712157815 5510 chr1 10367633 10367633 1 + G A rs193222943 10367616 + 10367596 10367636 41 AACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTG AACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTACTG < 41bp 1 0.0204460962590629 1 0.0535919964313507 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367616 chr1:10367633 . . 0 38 hm5C_associated_SNPs_2226 0 0 0 0 0 Cytosol 1 0.500231696488632 1 0.999536607022736 hm5C_site_5510 DeepMRMD:1;iRNA_m5C:0.999536607022736 5511 chr1 10367633 10367633 1 + G A rs193222943 10367617 + 10367597 10367637 41 ACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGA ACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTACTGA < 41bp 1 0.11842588852814 1 0.0673954784870148 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367617 chr1:10367633 . . 0 37 hm5C_associated_SNPs_2227 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_5511 DeepMRMD:1;iRNA_m5C:0.999536712157815 5512 chr1 10367633 10367633 1 + G A rs193222943 10367622 + 10367602 10367642 41 AGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTA AGGTGATCCACCTGCCTTGGCCTCCCAAAGTACTGAGATTA < 41bp 1 0.00950564785217451 1 0.0801327228546143 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367622 chr1:10367633 . . 0 32 hm5C_associated_SNPs_2228 0 0 0 0 0 Cytosol 1 0.500231643754239 1 0.999536712491523 hm5C_site_5512 DeepMRMD:1;iRNA_m5C:0.999536712491523 5513 chr1 10367633 10367633 1 + G A rs193222943 10367623 + 10367603 10367643 41 GGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTAC GGTGATCCACCTGCCTTGGCCTCCCAAAGTACTGAGATTAC < 41bp 1 0.0752830162593341 1 0.115915566682816 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367623 chr1:10367633 . . 0 31 hm5C_associated_SNPs_2229 0 0 0 0 0 Cytosol 1 0.500231643920763 1 0.999536712158474 hm5C_site_5513 DeepMRMD:1;iRNA_m5C:0.999536712158474 5514 chr1 10367633 10367633 1 + G A rs193222943 10367625 + 10367605 10367645 41 TGATCCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTACAG TGATCCACCTGCCTTGGCCTCCCAAAGTACTGAGATTACAG < 41bp 1 0.072933335508578 1 0.127787679433823 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367625 chr1:10367633 . . 0 29 hm5C_associated_SNPs_2230 0 0 0 0 0 Cytosol 1 0.500231643933007 1 0.999536712133987 hm5C_site_5514 DeepMRMD:1;iRNA_m5C:0.999536712133987 5515 chr1 10367633 10367633 1 + G A rs193222943 10367626 + 10367606 10367646 41 GATCCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTACAGG GATCCACCTGCCTTGGCCTCCCAAAGTACTGAGATTACAGG < 41bp 1 0.0679920122790493 1 0.416347950696945 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367626 chr1:10367633 . . 0 28 hm5C_associated_SNPs_2231 0 0 0 0 0 Cytosol 1 0.50023164392887 1 0.99953671214226 hm5C_site_5515 DeepMRMD:1;iRNA_m5C:0.99953671214226 5516 chr1 10367633 10367633 1 + G A rs193222943 10367627 + 10367607 10367647 41 ATCCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGC ATCCACCTGCCTTGGCCTCCCAAAGTACTGAGATTACAGGC < 41bp 1 0.229804324497305 1 0.651034951210022 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367627 chr1:10367633 . . 0 27 hm5C_associated_SNPs_2232 0 0 0 0 0 Cytosol 1 0.500231644001264 0.697930097579956 0.999536711997472 hm5C_site_5516 DeepMRMD:0.697930097579956;iRNA_m5C:0.999536711997472 5517 chr1 10367633 10367633 1 + G A rs193222943 10367634 + 10367614 10367654 41 TGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCC TGCCTTGGCCTCCCAAAGTACTGAGATTACAGGCGTGAGCC < 41bp 1 0.215595525026842 1 0.386707454919815 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367634 chr1:10367633 . . 0 20 hm5C_associated_SNPs_2233 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_5517 DeepMRMD:1;iRNA_m5C:0.999536712157815 5518 chr1 10367643 10367643 1 + C T rs185481776 10367623 + 10367603 10367643 41 GGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTAC GGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTAT < 41bp 1 0.0560544774020441 1 0.105890035629272 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367623 chr1:10367643 . . 0 41 hm5C_associated_SNPs_2234 0 0 0 0 0 Cytosol 1 0.500231643921124 1 0.999536712157753 hm5C_site_5518 DeepMRMD:1;iRNA_m5C:0.999536712157753 5519 chr1 10367643 10367643 1 + C T rs185481776 10367625 + 10367605 10367645 41 TGATCCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTACAG TGATCCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTATAG < 41bp 1 0.0768520819925801 1 0.12871840596199 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367625 chr1:10367643 . . 0 39 hm5C_associated_SNPs_2235 0 0 0 0 0 Cytosol 1 0.500231643934236 1 0.999536712131528 hm5C_site_5519 DeepMRMD:1;iRNA_m5C:0.999536712131528 Waist circumference adjusted for body mass index 5520 chr1 10367643 10367643 1 + C T rs185481776 10367626 + 10367606 10367646 41 GATCCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTACAGG GATCCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTATAGG < 41bp 1 0.0604450355623624 1 0.418940931558609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367626 chr1:10367643 . . 0 38 hm5C_associated_SNPs_2236 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_5520 DeepMRMD:1;iRNA_m5C:0.999536712157815 5521 chr1 10367643 10367643 1 + C T rs185481776 10367627 + 10367607 10367647 41 ATCCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGC ATCCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTATAGGC < 41bp 1 0.188237684608363 1 0.645939469337463 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367627 chr1:10367643 . . 0 37 hm5C_associated_SNPs_2237 0 0 0 0 0 Cytosol 1 0.500231643945479 0.708121061325074 0.999536712109042 hm5C_site_5521 DeepMRMD:0.708121061325074;iRNA_m5C:0.999536712109042 5522 chr1 10367643 10367643 1 + C T rs185481776 10367634 + 10367614 10367654 41 TGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCC TGCCTTGGCCTCCCAAAGTGCTGAGATTATAGGCGTGAGCC < 41bp 1 0.181226447987012 1 0.228724777698517 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10367634 chr1:10367643 . . 0 30 hm5C_associated_SNPs_2238 0 0 0 0 0 Cytosol 1 0.500231643921095 1 0.99953671215781 hm5C_site_5522 DeepMRMD:1;iRNA_m5C:0.99953671215781 5523 chr1 10440633 10440633 1 + G A rs571451087 10440619 + 10440599 10440639 41 ACTAAAAATACAAAAAGTAGCCAGGCGTGGTGGCGTGTGCC ACTAAAAATACAAAAAGTAGCCAGGCGTGGTGGCATGTGCC < 41bp 1 0.322630083990985 1 0.418767631053925 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10440619 chr1:10440633 . . 0 35 hm5C_associated_SNPs_2239 3 0 0 0 0 Cytosol 1 0.500231643922374 1 0.999536712155251 hm5C_site_5523 DeepMRMD:1;iRNA_m5C:0.999536712155251 Pheochromocytoma Pheochromocytoma 5524 chr1 10440633 10440633 1 + G A rs571451087 10440620 + 10440600 10440640 41 CTAAAAATACAAAAAGTAGCCAGGCGTGGTGGCGTGTGCCT CTAAAAATACAAAAAGTAGCCAGGCGTGGTGGCATGTGCCT < 41bp 1 0.504091992585303 1 0.336893558502197 experiment 0.991816014829394 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1B ENSG00000054523 UTR3 Human protein_coding chr1:10440620 chr1:10440633 . . 0 34 hm5C_associated_SNPs_2240 3 0 0 0 0 Cytosol 1 0.500231643927703 1 0.999536712144594 hm5C_site_5524 DeepMRMD:1;iRNA_m5C:0.999536712144594 Pheochromocytoma Pheochromocytoma 5525 chr1 10479791 10479791 1 + G A rs41274480 10479787 + 10479767 10479807 41 CCATGGTGGCACCGTGTCATCCTCGTCATACAATGCCTGAT CCATGGTGGCACCGTGTCATCCTCATCATACAATGCCTGAT < 41bp 1 0.39113789933221 1 0.0617382824420929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PGD ENSG00000142657 CDS Human protein_coding chr1:10479787 chr1:10479791 synonymous SNV . 0 25 hm5C_associated_SNPs_2241 0 0 1 0 0 Cytosol 1 0.500231883292326 1 0.999536233415347 hm5C_site_5525 DeepMRMD:1;iRNA_m5C:0.999536233415347 5526 chr1 10491261 10491261 1 + A C rs146147287 10491244 + 10491224 10491264 41 TTCGTTCCTTTCATCAGCGCCGGGCATATGGGGCGTCAGAG TTCGTTCCTTTCATCAGCGCCGGGCATATGGGGCGTCCGAG < 41bp 1 0.26427912972414 1 0.726519882678986 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPS-CORT ENSG00000175279 UTR5 Human protein_coding chr1:10491244 chr1:10491261 . . 0 38 hm5C_associated_SNPs_2243 0 0 1 0 0 unknown 1 0.500231643930456 0.546960234642028 0.999536712139087 hm5C_site_5526 DeepMRMD:0.546960234642028;iRNA_m5C:0.999536712139087 5527 chr1 11539349 11539349 1 + C A rs571148583 11539368 + 11539348 11539388 41 GCGTGGTGGCCGCCGCCCCCCGACCCTCTGCGCACTCTCTC GAGTGGTGGCCGCCGCCCCCCGACCCTCTGCGCACTCTCTC < 41bp 1 0.413340310949429 1 0.616848587989807 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DISP3 ENSG00000204624 UTR5 Human protein_coding chr1:11539368 chr1:11539349 . . 0 2 hm5C_associated_SNPs_2244 0 0 0 0 1 exosome 1 0.500231710404873 0.766302824020386 0.999536579190254 hm5C_site_5527 DeepMRMD:0.766302824020386;iRNA_m5C:0.999536579190254 5528 chr1 11539363 11539363 1 + C T rs538675628 11539368 + 11539348 11539388 41 GCGTGGTGGCCGCCGCCCCCCGACCCTCTGCGCACTCTCTC GCGTGGTGGCCGCCGTCCCCCGACCCTCTGCGCACTCTCTC < 41bp 1 0.456575787557729 1 0.5869060754776 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DISP3 ENSG00000204624 UTR5 Human protein_coding chr1:11539368 chr1:11539363 . . 0 16 hm5C_associated_SNPs_2245 0 0 0 0 1 exosome 1 0.50023156283225 0.8261878490448 0.9995368743355 hm5C_site_5528 DeepMRMD:0.8261878490448;iRNA_m5C:0.9995368743355 5529 chr1 11779748 11779748 1 + G A rs200060632 11779741 + 11779721 11779761 41 AACGGCGACCAGGGATCCTTCATCAACGTCTAGCGGCCCCG AACGGCGACCAGGGATCCTTCATCAACATCTAGCGGCCCCG < 41bp 1 0.609906958990159 1 0.137748241424561 experiment 0.780186082019683 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11779741 chr1:11779748 nonsynonymous SNV 0.769 0 28 hm5C_associated_SNPs_2246 0 0 0 0 0 exosome 1 0.500231643920423 1 0.999536712159153 hm5C_site_5529 DeepMRMD:1;iRNA_m5C:0.999536712159153 5530 chr1 11898624 11898624 1 + C T rs2272802 11898626 + 11898606 11898646 41 CATGAACCCTTCGCCTTTCACCGTCTCGCCCAACACCCACG CATGAACCCTTCGCCTTTTACCGTCTCGCCCAACACCCACG < 41bp 1 0.116441154958224 1 0.0252809226512909 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11898626 chr1:11898624 synonymous SNV . 0 19 hm5C_associated_SNPs_2248 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5530 DeepMRMD:1;iRNA_m5C:0.999536712157815 5531 chr1 12009956 12009956 1 + G A rs7551175 12009955 + 12009935 12009975 41 GAGGATCTGGTCATTCTCTTCGCAGACAGGTAGGTGGGTCA GAGGATCTGGTCATTCTCTTCACAGACAGGTAGGTGGGTCA < 41bp 1 0.502563866326686 1 0.658891916275024 experiment 0.994872267346627 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12009955 chr1:12009956 nonsynonymous SNV 0.911 0 22 hm5C_associated_SNPs_2249 2 0 1 0 1 Nucleus 1 0.50023164393813 0.682216167449952 0.99953671212374 hm5C_site_5531 DeepMRMD:0.682216167449952;iRNA_m5C:0.99953671212374 not specified not specified 5532 chr1 12042096 12042096 1 + C G rs7538183 12042094 + 12042074 12042114 41 TGAGACAGGACAGAAGAGAACTCAGAATCTTTTTGTCTTTT TGAGACAGGACAGAAGAGAACTGAGAATCTTTTTGTCTTTT < 41bp 1 0.423383180175594 1 0.0976514220237732 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFN2 ENSG00000116688 UTR5 Human protein_coding chr1:12042094 chr1:12042096 . . 0 23 hm5C_associated_SNPs_2250 0 0 1 0 2 Ribosome 1 0.500199736740764 1 0.999600526518473 hm5C_site_5532 DeepMRMD:1;iRNA_m5C:0.999600526518473 5533 chr1 12061533 12061533 1 + G A rs41278630 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCCAGGGACCGCATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.216461225695756 1 0.0878639221191406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061533 nonsynonymous SNV 0.781 2 10 hm5C_associated_SNPs_2251 4 0 1 0 2 Ribosome 1 0.500231643921046 1 0.999536712157908 hm5C_site_5533 DeepMRMD:1;iRNA_m5C:0.999536712157908 not specified not specified 5534 chr1 12072932 12072932 1 + G A rs150255183 12072939 + 12072919 12072959 41 TTCCTAGAAATAAGCAACACCTCTCCCAAAAAGCAGCCCAC TTCCTAGAAATAAACAACACCTCTCCCAAAAAGCAGCCCAC < 41bp 1 0.132345771670383 1 0.611884891986847 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFN2 ENSG00000116688 UTR3 Human protein_coding chr1:12072939 chr1:12072932 . . 0 14 hm5C_associated_SNPs_2253 0 0 1 0 0 Ribosome 1 0.500231644744881 0.776230216026306 0.999536710510238 hm5C_site_5534 DeepMRMD:0.776230216026306;iRNA_m5C:0.999536710510238 5535 chr1 12079552 12079552 1 + T C rs113851829 12079560 + 12079540 12079580 41 GGCCGAGGCCCCTGGAACGGCTCAGGCGGCTGCGGCTGCTA GGCCGAGGCCCCCGGAACGGCTCAGGCGGCTGCGGCTGCTA < 41bp 1 0.675046731505624 1 0.606323957443237 experiment 0.649906536988752 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MIIP ENSG00000116691 UTR5 Human protein_coding chr1:12079560 chr1:12079552 . . 0 13 hm5C_associated_SNPs_2254 0 0 0 0 1 chromatin 1 0.500231643921092 0.787352085113526 0.999536712157815 hm5C_site_5535 DeepMRMD:0.787352085113526;iRNA_m5C:0.999536712157815 5536 chr1 12079553 12079553 1 + G C rs571141268 12079560 + 12079540 12079580 41 GGCCGAGGCCCCTGGAACGGCTCAGGCGGCTGCGGCTGCTA GGCCGAGGCCCCTCGAACGGCTCAGGCGGCTGCGGCTGCTA < 41bp 1 0.633500474540628 1 0.535982310771942 experiment 0.732999050918743 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MIIP ENSG00000116691 UTR5 Human protein_coding chr1:12079560 chr1:12079553 . . 0 14 hm5C_associated_SNPs_2255 0 0 0 0 1 chromatin 1 0.500231643921092 0.928035378456116 0.999536712157815 hm5C_site_5536 DeepMRMD:0.928035378456116;iRNA_m5C:0.999536712157815 5537 chr1 12091925 12091925 1 + G T rs114136497 12091931 + 12091911 12091951 41 CTCCCCTCTGGCAGGCGCACCCAGGAGATGGAATCCCCTGC CTCCCCTCTGGCAGTCGCACCCAGGAGATGGAATCCCCTGC < 41bp 1 0.612172930866913 1 0.710017144680023 experiment 0.775654138266173 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MIIP ENSG00000116691 UTR3 Human protein_coding chr1:12091931 chr1:12091925 . . 0 15 hm5C_associated_SNPs_2256 0 0 1 0 0 chromatin 1 0.500231643926382 0.579965710639954 0.999536712147237 hm5C_site_5537 DeepMRMD:0.579965710639954;iRNA_m5C:0.999536712147237 5538 chr1 12091946 12091946 1 + C T rs546283307 12091931 + 12091911 12091951 41 CTCCCCTCTGGCAGGCGCACCCAGGAGATGGAATCCCCTGC CTCCCCTCTGGCAGGCGCACCCAGGAGATGGAATCTCCTGC < 41bp 1 0.568108210087342 1 0.477336645126343 experiment 0.863783579825315 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MIIP ENSG00000116691 UTR3 Human protein_coding chr1:12091931 chr1:12091946 . . 0 36 hm5C_associated_SNPs_2257 0 0 1 0 0 chromatin 1 0.500231643952797 1 0.999536712094406 hm5C_site_5538 DeepMRMD:1;iRNA_m5C:0.999536712094406 5539 chr1 12092044 12092044 1 + G A rs186593876 12092038 + 12092018 12092058 41 GAGTTCCAGAGAGGGAGGACCCTGGGGTGGAGGGTGAGGGA GAGTTCCAGAGAGGGAGGACCCTGGGATGGAGGGTGAGGGA < 41bp 1 0.525833608186897 1 0.393742799758911 experiment 0.948332783626207 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MIIP ENSG00000116691 UTR3 Human protein_coding chr1:12092038 chr1:12092044 . . 0 27 hm5C_associated_SNPs_2258 0 0 1 0 0 chromatin 1 0.500232313051408 1 0.999535373897184 hm5C_site_5539 DeepMRMD:1;iRNA_m5C:0.999535373897184 5540 chr1 12092055 12092055 1 + G C rs531145545 12092038 + 12092018 12092058 41 GAGTTCCAGAGAGGGAGGACCCTGGGGTGGAGGGTGAGGGA GAGTTCCAGAGAGGGAGGACCCTGGGGTGGAGGGTGACGGA < 41bp 1 0.531595240672794 1 0.478969901800156 experiment 0.936809518654412 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MIIP ENSG00000116691 UTR3 Human protein_coding chr1:12092038 chr1:12092055 . . 0 38 hm5C_associated_SNPs_2259 0 0 1 0 0 chromatin 1 0.500231736962555 1 0.999536526074891 hm5C_site_5540 DeepMRMD:1;iRNA_m5C:0.999536526074891 5541 chr1 12317052 12317052 1 + C T rs138858983 12317053 + 12317033 12317073 41 CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTC CTAATACAAAGCTGCAATATCGGCAAATCATGGAATTCCTC < 41bp 1 0.293913065778547 1 0.706778764724731 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12317053 chr1:12317052 synonymous SNV . 0 20 hm5C_associated_SNPs_2260 0 0 1 0 2 Nucleus 1 0.500231643921092 0.586442470550538 0.999536712157815 hm5C_site_5541 DeepMRMD:0.586442470550538;iRNA_m5C:0.999536712157815 5542 chr1 15250983 15250983 1 + G A rs182975678 15250963 + 15250943 15250983 41 GGGCCGGGCCCGCGCGGCCCCCGGGACCCGCAGCCTGCGAG GGGCCGGGCCCGCGCGGCCCCCGGGACCCGCAGCCTGCGAA < 41bp 1 0.661723311030648 1 0.841070771217346 experiment 0.676553377938704 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZN ENSG00000189337 CDS Human protein_coding chr1:15250963 chr1:15250983 synonymous SNV . 0 41 hm5C_associated_SNPs_2261 0 0 0 0 1 chromatin 1 0.500231644950241 0.317858457565308 0.999536710099519 hm5C_site_5542 DeepMRMD:0.317858457565308;iRNA_m5C:0.999536710099519 5543 chr1 15756406 15756406 1 + C T rs115472852 15756420 + 15756400 15756440 41 CTGTGTCGTGAAACTGTGACCATCACTCAGTCCAAACAAGT CTGTGTTGTGAAACTGTGACCATCACTCAGTCCAAACAAGT < 41bp 1 0.346387274273542 1 0.0524154305458069 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFHD2 ENSG00000142634 UTR3 Human protein_coding chr1:15756420 chr1:15756406 . . 0 7 hm5C_associated_SNPs_2263 0 0 1 3 0 Ribosome 1 0.500225772286809 1 0.999548455426383 hm5C_site_5543 DeepMRMD:1;iRNA_m5C:0.999548455426383 5544 chr1 15993415 15993415 1 + A G rs144568839 15993398 + 15993378 15993418 41 CAGATGCTGTGGGCCTAAAACAGCTCTTTAAAAATCTATTT CAGATGCTGTGGGCCTAAAACAGCTCTTTAAAAATCTGTTT < 41bp 1 0.350385866900859 1 0.622523128986359 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RSC1A1;PLEKHM2 ENSG00000197312 UTR3 Human protein_coding chr1:15993398 chr1:15993415 . . 0 38 hm5C_associated_SNPs_2264 0 0 1 0 0 unknown 1 0.500260394046842 0.754953742027282 0.999479211906317 hm5C_site_5544 DeepMRMD:0.754953742027282;iRNA_m5C:0.999479211906317 5545 chr1 15993416 15993416 1 + T C rs147468893 15993398 + 15993378 15993418 41 CAGATGCTGTGGGCCTAAAACAGCTCTTTAAAAATCTATTT CAGATGCTGTGGGCCTAAAACAGCTCTTTAAAAATCTACTT < 41bp 1 0.360397460847893 1 0.646910548210144 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RSC1A1;PLEKHM2 ENSG00000197312 UTR3 Human protein_coding chr1:15993398 chr1:15993416 . . 0 39 hm5C_associated_SNPs_2265 0 0 1 0 0 unknown 1 0.500260396685014 0.706178903579712 0.999479206629973 hm5C_site_5545 DeepMRMD:0.706178903579712;iRNA_m5C:0.999479206629973 5546 chr1 16056364 16056364 1 + G A rs3817269 16056369 + 16056349 16056389 41 CCCCAGCATCCTGACGGATGCCACCATGGAGAAGCTGGCAC CCCCAGCATCCTGACAGATGCCACCATGGAGAAGCTGGCAC < 41bp 1 0.0650160557731241 1 0.0659830868244171 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056369 chr1:16056364 synonymous SNV . 0 16 hm5C_associated_SNPs_2266 0 0 1 0 2 chromatin 1 0.500231655465919 1 0.999536689068162 hm5C_site_5546 DeepMRMD:1;iRNA_m5C:0.999536689068162 5547 chr1 16056364 16056364 1 + G A rs3817269 16056373 + 16056353 16056393 41 AGCATCCTGACGGATGCCACCATGGAGAAGCTGGCACTGGC AGCATCCTGACAGATGCCACCATGGAGAAGCTGGCACTGGC < 41bp 1 0.358224691599603 1 0.441890299320221 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056373 chr1:16056364 synonymous SNV . 0 12 hm5C_associated_SNPs_2267 0 0 1 0 2 chromatin 1 0.500244518495627 1 0.999510963008746 hm5C_site_5547 DeepMRMD:1;iRNA_m5C:0.999510963008746 5548 chr1 16199344 16199344 1 + C T rs375389506 16199355 + 16199335 16199375 41 AATTCTTCCCAAGAGGGGATCTGAAGGAGGAGTGGCTGCCT AATTCTTCCTAAGAGGGGATCTGAAGGAGGAGTGGCTGCCT < 41bp 1 0.441048253352936 1 0.857460677623749 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16199355 chr1:16199344 synonymous SNV . 0 10 hm5C_associated_SNPs_2268 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644951797 0.285078644752502 0.999536710096405 hm5C_site_5548 DeepMRMD:0.285078644752502;iRNA_m5C:0.999536710096405 5549 chr1 16260513 16260513 1 + A G rs77870948 16260507 + 16260487 16260527 41 AAAAACAGCACCTCCAGTGACAAACAACTCTGAGATACAAG AAAAACAGCACCTCCAGTGACAAACAGCTCTGAGATACAAG < 41bp 1 0.048913501483371 1 0.119704723358154 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16260507 chr1:16260513 nonsynonymous SNV 0.015 0 27 hm5C_associated_SNPs_2269 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643922067 1 0.999536712155867 hm5C_site_5549 DeepMRMD:1;iRNA_m5C:0.999536712155867 5550 chr1 16260513 16260513 1 + A G rs77870948 16260511 + 16260491 16260531 41 ACAGCACCTCCAGTGACAAACAACTCTGAGATACAAGCCTC ACAGCACCTCCAGTGACAAACAGCTCTGAGATACAAGCCTC < 41bp 1 0.294347130699053 1 0.735147655010223 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16260511 chr1:16260513 nonsynonymous SNV 0.015 0 23 hm5C_associated_SNPs_2270 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921104 0.529704689979554 0.999536712157793 hm5C_site_5550 DeepMRMD:0.529704689979554;iRNA_m5C:0.999536712157793 5551 chr1 16261814 16261814 1 + C A rs41269151 16261811 + 16261791 16261831 41 CAAAGCTAGATGCTCATTCTCCTCGACCAAGTGGACCCGGG CAAAGCTAGATGCTCATTCTCCTAGACCAAGTGGACCCGGG < 41bp 1 0.0758416595144839 1 0.248005896806717 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16261811 chr1:16261814 synonymous SNV . 0 24 hm5C_associated_SNPs_2271 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644357974 1 0.999536711284051 hm5C_site_5551 DeepMRMD:1;iRNA_m5C:0.999536711284051 5552 chr1 16349137 16349137 1 + G A rs9442189 16349157 + 16349137 16349177 41 GTGAGGGCTTCTCAGGGGACCCTGTGACTCTGCAGGAGCTG ATGAGGGCTTCTCAGGGGACCCTGTGACTCTGCAGGAGCTG < 41bp 1 0.135689231977855 1 0.0836345851421356 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16349157 chr1:16349137 nonsynonymous SNV 0.734 2 1 hm5C_associated_SNPs_2272 0 1 0 0 2 Endoplasmic reticulum 1 0.500231643911719 1 0.999536712176562 hm5C_site_5552 DeepMRMD:1;iRNA_m5C:0.999536712176562 5553 chr1 16358248 16358248 1 + A G rs144453223 16358254 + 16358234 16358274 41 TGAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG TGAACCACAGCATCGCCACACTGGCCAAGGACACGCCGCTG < 41bp 1 0.444106004016039 1 0.395307451486588 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358254 chr1:16358248 nonsynonymous SNV 0.094 1 15 hm5C_associated_SNPs_2273 0 0 0 0 3 Endoplasmic reticulum 1 0.500231060867383 1 0.999537878265234 hm5C_site_5553 DeepMRMD:1;iRNA_m5C:0.999537878265234 5554 chr1 17053781 17053781 1 + C T rs575820869 17053782 + 17053762 17053802 41 GGCCGTGGGTGTGTAGAGGCCTTGGTGGTGCAGTGGTAGAA GGCCGTGGGTGTGTAGAGGTCTTGGTGGTGCAGTGGTAGAA < 41bp 1 0.612786803713705 1 0.144563913345337 experiment 0.774426392572589 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053782 chr1:17053781 . . 0 20 hm5C_associated_SNPs_2276 0 0 1 0 0 unknown 1 0.500231643922196 1 0.999536712155608 hm5C_site_5554 DeepMRMD:1;iRNA_m5C:0.999536712155608 5555 chr1 17053791 17053791 1 + G T rs79963399 17053782 + 17053762 17053802 41 GGCCGTGGGTGTGTAGAGGCCTTGGTGGTGCAGTGGTAGAA GGCCGTGGGTGTGTAGAGGCCTTGGTGGTTCAGTGGTAGAA < 41bp 1 0.512898807601731 1 0.115259110927582 experiment 0.974202384796538 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053782 chr1:17053791 . . 0 30 hm5C_associated_SNPs_2277 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_5555 DeepMRMD:1;iRNA_m5C:0.999536712157814 5556 chr1 17053791 17053791 1 + G T rs79963399 17053807 + 17053787 17053827 41 TGGTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCC TGGTTCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCC < 41bp 1 0.608112729491567 1 0.45335665345192 experiment 0.783774541016866 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053807 chr1:17053791 . . 0 5 hm5C_associated_SNPs_2279 0 0 1 0 0 unknown 1 0.50023164395034 1 0.999536712099319 hm5C_site_5556 DeepMRMD:1;iRNA_m5C:0.999536712099319 5557 chr1 17053791 17053791 1 + G T rs79963399 17053809 + 17053789 17053829 41 GTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGG GTTCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGG < 41bp 1 0.0826861821089323 1 0.163949698209763 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053809 chr1:17053791 . . 0 3 hm5C_associated_SNPs_2280 0 0 1 0 0 unknown 1 0.500231643929468 1 0.999536712141065 hm5C_site_5557 DeepMRMD:1;iRNA_m5C:0.999536712141065 5558 chr1 17053791 17053791 1 + G T rs79963399 17053810 + 17053790 17053830 41 TGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGG TTCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGG < 41bp 1 0.202245937337508 1 0.779016017913818 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053810 chr1:17053791 . . 0 2 hm5C_associated_SNPs_2281 0 0 1 0 0 unknown 1 0.500231636917732 0.441967964172364 0.999536726164535 hm5C_site_5558 DeepMRMD:0.441967964172364;iRNA_m5C:0.999536726164535 5559 chr1 17053793 17053793 1 + A C rs2419167 17053782 + 17053762 17053802 41 GGCCGTGGGTGTGTAGAGGCCTTGGTGGTGCAGTGGTAGAA GGCCGTGGGTGTGTAGAGGCCTTGGTGGTGCCGTGGTAGAA < 41bp 1 0.555167940839012 1 0.207430869340897 experiment 0.889664118321975 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053782 chr1:17053793 . . 0 32 hm5C_associated_SNPs_2282 0 0 1 0 0 unknown 1 0.500231643921516 1 0.999536712156968 hm5C_site_5559 DeepMRMD:1;iRNA_m5C:0.999536712156968 5560 chr1 17053793 17053793 1 + A C rs2419167 17053807 + 17053787 17053827 41 TGGTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCC TGGTGCCGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCC < 41bp 1 0.625697447860235 1 0.363987028598785 experiment 0.74860510427953 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053807 chr1:17053793 . . 0 7 hm5C_associated_SNPs_2285 0 0 1 0 0 unknown 1 0.500231643920984 1 0.999536712158032 hm5C_site_5560 DeepMRMD:1;iRNA_m5C:0.999536712158032 5561 chr1 17053793 17053793 1 + A C rs2419167 17053809 + 17053789 17053829 41 GTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGG GTGCCGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGG < 41bp 1 0.0648508600620695 1 0.0961242914199829 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053809 chr1:17053793 . . 0 5 hm5C_associated_SNPs_2286 0 0 1 0 0 unknown 1 0.500231643687601 1 0.999536712624798 hm5C_site_5561 DeepMRMD:1;iRNA_m5C:0.999536712624798 5562 chr1 17053793 17053793 1 + A C rs2419167 17053810 + 17053790 17053830 41 TGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGG TGCCGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGG < 41bp 1 0.205771167956808 1 0.721898436546326 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053810 chr1:17053793 . . 0 4 hm5C_associated_SNPs_2287 0 0 1 0 0 unknown 1 0.500188389707605 0.556203126907348 0.999623220584791 hm5C_site_5562 DeepMRMD:0.556203126907348;iRNA_m5C:0.999623220584791 5563 chr1 17053793 17053793 1 + A C rs2419167 17053812 + 17053792 17053832 41 CAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTT CCGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTT < 41bp 1 0.232799500618236 1 0.239953309297562 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053812 chr1:17053793 . . 0 2 hm5C_associated_SNPs_2288 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5563 DeepMRMD:1;iRNA_m5C:0.999536712157815 5564 chr1 17053793 17053793 1 + A C rs2419167 17053813 + 17053793 17053833 41 AGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTC CGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTC < 41bp 1 0.4506669118389 1 0.372851729393005 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053813 chr1:17053793 . . 0 1 hm5C_associated_SNPs_2289 0 0 1 0 0 unknown 1 0.500231673543912 1 0.999536652912175 hm5C_site_5564 DeepMRMD:1;iRNA_m5C:0.999536652912175 5565 chr1 17053801 17053801 1 + A C rs2419166 17053782 + 17053762 17053802 41 GGCCGTGGGTGTGTAGAGGCCTTGGTGGTGCAGTGGTAGAA GGCCGTGGGTGTGTAGAGGCCTTGGTGGTGCAGTGGTAGCA < 41bp 1 0.544414294009625 1 0.170946896076202 experiment 0.911171411980749 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053782 chr1:17053801 . . 0 40 hm5C_associated_SNPs_2290 0 0 1 0 0 unknown 1 0.500231643921087 1 0.999536712157827 hm5C_site_5565 DeepMRMD:1;iRNA_m5C:0.999536712157827 5566 chr1 17053801 17053801 1 + A C rs2419166 17053807 + 17053787 17053827 41 TGGTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCC TGGTGCAGTGGTAGCATTCTCGCCTCCCACGTGGGAGACCC < 41bp 1 0.684605909660155 1 0.780256867408752 experiment 0.630788180679691 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053807 chr1:17053801 . . 0 15 hm5C_associated_SNPs_2292 0 0 1 0 0 unknown 1 0.500231643929158 0.439486265182496 0.999536712141684 hm5C_site_5566 DeepMRMD:0.439486265182496;iRNA_m5C:0.999536712141684 5567 chr1 17053801 17053801 1 + A C rs2419166 17053809 + 17053789 17053829 41 GTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGG GTGCAGTGGTAGCATTCTCGCCTCCCACGTGGGAGACCCGG < 41bp 1 0.0813907599418804 1 0.230181962251663 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053809 chr1:17053801 . . 0 13 hm5C_associated_SNPs_2293 0 0 1 0 0 unknown 1 0.500231643496226 1 0.999536713007548 hm5C_site_5567 DeepMRMD:1;iRNA_m5C:0.999536713007548 5568 chr1 17053801 17053801 1 + A C rs2419166 17053810 + 17053790 17053830 41 TGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGG TGCAGTGGTAGCATTCTCGCCTCCCACGTGGGAGACCCGGG < 41bp 1 0.222770610095418 1 0.884514927864075 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053810 chr1:17053801 . . 0 12 hm5C_associated_SNPs_2294 0 0 1 0 0 unknown 1 0.500231643382455 0.23097014427185 0.999536713235091 hm5C_site_5568 DeepMRMD:0.23097014427185;iRNA_m5C:0.999536713235091 5569 chr1 17053801 17053801 1 + A C rs2419166 17053812 + 17053792 17053832 41 CAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTT CAGTGGTAGCATTCTCGCCTCCCACGTGGGAGACCCGGGTT < 41bp 1 0.214499342210259 1 0.30424377322197 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053812 chr1:17053801 . . 0 10 hm5C_associated_SNPs_2295 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_5569 DeepMRMD:1;iRNA_m5C:0.999536712157814 5570 chr1 17053801 17053801 1 + A C rs2419166 17053813 + 17053793 17053833 41 AGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTC AGTGGTAGCATTCTCGCCTCCCACGTGGGAGACCCGGGTTC < 41bp 1 0.470350036931681 1 0.320701718330383 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053813 chr1:17053801 . . 0 9 hm5C_associated_SNPs_2296 0 0 1 0 0 unknown 1 0.500231643914224 1 0.999536712171553 hm5C_site_5570 DeepMRMD:1;iRNA_m5C:0.999536712171553 5571 chr1 17053801 17053801 1 + A C rs2419166 17053816 + 17053796 17053836 41 GGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTCAAT GGTAGCATTCTCGCCTCCCACGTGGGAGACCCGGGTTCAAT < 41bp 1 0.675373065299755 1 0.706743121147156 experiment 0.64925386940049 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053816 chr1:17053801 . . 0 6 hm5C_associated_SNPs_2298 0 0 1 0 0 unknown 1 0.500231643921092 0.586513757705688 0.999536712157815 hm5C_site_5571 DeepMRMD:0.586513757705688;iRNA_m5C:0.999536712157815 5572 chr1 17053816 17053816 1 + C A rs2419165 17053807 + 17053787 17053827 41 TGGTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCC TGGTGCAGTGGTAGAATTCTCGCCTCCCAAGTGGGAGACCC < 41bp 1 0.662900850648663 1 0.547956228256226 experiment 0.674198298702673 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053807 chr1:17053816 . . 0 30 hm5C_associated_SNPs_2300 0 0 1 0 0 unknown 1 0.500231643921928 0.904087543487548 0.999536712156143 hm5C_site_5572 DeepMRMD:0.904087543487548;iRNA_m5C:0.999536712156143 5573 chr1 17053816 17053816 1 + C A rs2419165 17053809 + 17053789 17053829 41 GTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGG GTGCAGTGGTAGAATTCTCGCCTCCCAAGTGGGAGACCCGG < 41bp 1 0.0706624414038209 1 0.0716089308261871 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053809 chr1:17053816 . . 0 28 hm5C_associated_SNPs_2301 0 0 1 0 0 unknown 1 0.500231643920275 1 0.999536712159451 hm5C_site_5573 DeepMRMD:1;iRNA_m5C:0.999536712159451 5574 chr1 17053816 17053816 1 + C A rs2419165 17053810 + 17053790 17053830 41 TGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGG TGCAGTGGTAGAATTCTCGCCTCCCAAGTGGGAGACCCGGG < 41bp 1 0.223810909194191 1 0.590074717998505 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053810 chr1:17053816 . . 0 27 hm5C_associated_SNPs_2302 0 0 1 0 0 unknown 1 0.500231643907123 0.81985056400299 0.999536712185754 hm5C_site_5574 DeepMRMD:0.81985056400299;iRNA_m5C:0.999536712185754 5575 chr1 17053816 17053816 1 + C A rs2419165 17053812 + 17053792 17053832 41 CAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTT CAGTGGTAGAATTCTCGCCTCCCAAGTGGGAGACCCGGGTT < 41bp 1 0.578271556801496 1 0.476733267307281 experiment 0.843456886397007 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053812 chr1:17053816 . . 0 25 hm5C_associated_SNPs_2303 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5575 DeepMRMD:1;iRNA_m5C:0.999536712157815 5576 chr1 17053816 17053816 1 + C A rs2419165 17053813 + 17053793 17053833 41 AGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTC AGTGGTAGAATTCTCGCCTCCCAAGTGGGAGACCCGGGTTC < 41bp 1 0.407880753310829 1 0.720746457576752 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053813 chr1:17053816 . . 0 24 hm5C_associated_SNPs_2304 0 0 1 0 0 unknown 1 0.500231644997412 0.558507084846496 0.999536710005177 hm5C_site_5576 DeepMRMD:0.558507084846496;iRNA_m5C:0.999536710005177 5577 chr1 17053816 17053816 1 + C A rs2419165 17053814 + 17053794 17053834 41 GTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTCA GTGGTAGAATTCTCGCCTCCCAAGTGGGAGACCCGGGTTCA < 41bp 1 0.694722310708025 1 0.818739175796509 experiment 0.61055537858395 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053814 chr1:17053816 . . 0 23 hm5C_associated_SNPs_2305 0 0 1 0 0 unknown 1 0.500231643921092 0.362521648406982 0.999536712157815 hm5C_site_5577 DeepMRMD:0.362521648406982;iRNA_m5C:0.999536712157815 5578 chr1 17053816 17053816 1 + C A rs2419165 17053825 + 17053805 17053845 41 CTCGCCTCCCACGTGGGAGACCCGGGTTCAATTCCCGGCCA CTCGCCTCCCAAGTGGGAGACCCGGGTTCAATTCCCGGCCA < 41bp 1 0.672154719362588 1 0.41332820057869 experiment 0.655690561274825 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053825 chr1:17053816 . . 0 12 hm5C_associated_SNPs_2306 0 0 1 0 0 unknown 1 0.500231643935783 1 0.999536712128434 hm5C_site_5578 DeepMRMD:1;iRNA_m5C:0.999536712128434 5579 chr1 17053816 17053816 1 + C A rs2419165 17053827 + 17053807 17053847 41 CGCCTCCCACGTGGGAGACCCGGGTTCAATTCCCGGCCAAT CGCCTCCCAAGTGGGAGACCCGGGTTCAATTCCCGGCCAAT < 41bp 1 0.608095894432206 1 0.8169846534729 experiment 0.783808211135588 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053827 chr1:17053816 . . 0 10 hm5C_associated_SNPs_2308 0 0 1 0 0 unknown 1 0.500231644043733 0.3660306930542 0.999536711912534 hm5C_site_5579 DeepMRMD:0.3660306930542;iRNA_m5C:0.999536711912534 5580 chr1 17053818 17053818 1 + T C rs5014834 17053807 + 17053787 17053827 41 TGGTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCC TGGTGCAGTGGTAGAATTCTCGCCTCCCACGCGGGAGACCC < 41bp 1 0.641614002213955 1 0.418918132781982 experiment 0.71677199557209 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053807 chr1:17053818 . . 0 32 hm5C_associated_SNPs_2310 0 0 1 0 0 unknown 1 0.500231644863482 1 0.999536710273036 hm5C_site_5580 DeepMRMD:1;iRNA_m5C:0.999536710273036 5581 chr1 17053818 17053818 1 + T C rs5014834 17053809 + 17053789 17053829 41 GTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGG GTGCAGTGGTAGAATTCTCGCCTCCCACGCGGGAGACCCGG < 41bp 1 0.0823614415508173 1 0.180462926626205 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053809 chr1:17053818 . . 0 30 hm5C_associated_SNPs_2311 0 0 1 0 0 unknown 1 0.500233200194252 1 0.999533599611496 hm5C_site_5581 DeepMRMD:1;iRNA_m5C:0.999533599611496 5582 chr1 17053818 17053818 1 + T C rs5014834 17053810 + 17053790 17053830 41 TGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGG TGCAGTGGTAGAATTCTCGCCTCCCACGCGGGAGACCCGGG < 41bp 1 0.206005726278027 1 0.839639663696289 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053810 chr1:17053818 . . 0 29 hm5C_associated_SNPs_2312 0 0 1 0 0 unknown 1 0.500231643999141 0.320720672607422 0.999536712001719 hm5C_site_5582 DeepMRMD:0.320720672607422;iRNA_m5C:0.999536712001719 5583 chr1 17053818 17053818 1 + T C rs5014834 17053812 + 17053792 17053832 41 CAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTT CAGTGGTAGAATTCTCGCCTCCCACGCGGGAGACCCGGGTT < 41bp 1 0.159331353358313 1 0.289843261241913 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053812 chr1:17053818 . . 0 27 hm5C_associated_SNPs_2313 0 0 1 0 0 unknown 1 0.500231643921075 1 0.999536712157851 hm5C_site_5583 DeepMRMD:1;iRNA_m5C:0.999536712157851 5584 chr1 17053818 17053818 1 + T C rs5014834 17053813 + 17053793 17053833 41 AGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTC AGTGGTAGAATTCTCGCCTCCCACGCGGGAGACCCGGGTTC < 41bp 1 0.413374060407446 1 0.411403506994247 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053813 chr1:17053818 . . 0 26 hm5C_associated_SNPs_2314 0 0 1 0 0 unknown 1 0.500231666986585 1 0.99953666602683 hm5C_site_5584 DeepMRMD:1;iRNA_m5C:0.99953666602683 5585 chr1 17053818 17053818 1 + T C rs5014834 17053814 + 17053794 17053834 41 GTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTCA GTGGTAGAATTCTCGCCTCCCACGCGGGAGACCCGGGTTCA < 41bp 1 0.645539185717334 1 0.413295030593872 experiment 0.708921628565332 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053814 chr1:17053818 . . 0 25 hm5C_associated_SNPs_2315 0 0 1 0 0 unknown 1 0.500231643921106 1 0.999536712157787 hm5C_site_5585 DeepMRMD:1;iRNA_m5C:0.999536712157787 5586 chr1 17053818 17053818 1 + T C rs5014834 17053827 + 17053807 17053847 41 CGCCTCCCACGTGGGAGACCCGGGTTCAATTCCCGGCCAAT CGCCTCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCAAT < 41bp 1 0.658498115872354 1 0.760148644447327 experiment 0.683003768255292 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053827 chr1:17053818 . . 0 12 hm5C_associated_SNPs_2318 0 0 1 0 0 unknown 1 0.500231553194781 0.479702711105346 0.999536893610437 hm5C_site_5586 DeepMRMD:0.479702711105346;iRNA_m5C:0.999536893610437 5587 chr1 17053819 17053819 1 + G C rs5016505 17053807 + 17053787 17053827 41 TGGTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCC TGGTGCAGTGGTAGAATTCTCGCCTCCCACGTCGGAGACCC < 41bp 1 0.698075286656915 1 0.35766464471817 experiment 0.60384942668617 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053807 chr1:17053819 . . 0 33 hm5C_associated_SNPs_2320 0 0 1 0 0 unknown 1 0.500231644685382 1 0.999536710629235 hm5C_site_5587 DeepMRMD:1;iRNA_m5C:0.999536710629235 5588 chr1 17053819 17053819 1 + G C rs5016505 17053809 + 17053789 17053829 41 GTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGG GTGCAGTGGTAGAATTCTCGCCTCCCACGTCGGAGACCCGG < 41bp 1 0.076814186481211 1 0.0678219199180603 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053809 chr1:17053819 . . 0 31 hm5C_associated_SNPs_2321 0 0 1 0 0 unknown 1 0.500231788142833 1 0.999536423714334 hm5C_site_5588 DeepMRMD:1;iRNA_m5C:0.999536423714334 5589 chr1 17053819 17053819 1 + G C rs5016505 17053810 + 17053790 17053830 41 TGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGG TGCAGTGGTAGAATTCTCGCCTCCCACGTCGGAGACCCGGG < 41bp 1 0.198693313626984 1 0.849792957305908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053810 chr1:17053819 . . 0 30 hm5C_associated_SNPs_2322 0 0 1 0 0 unknown 1 0.500231792122984 0.300414085388184 0.999536415754033 hm5C_site_5589 DeepMRMD:0.300414085388184;iRNA_m5C:0.999536415754033 5590 chr1 17053819 17053819 1 + G C rs5016505 17053812 + 17053792 17053832 41 CAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTT CAGTGGTAGAATTCTCGCCTCCCACGTCGGAGACCCGGGTT < 41bp 1 0.184216140643925 1 0.18797641992569 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053812 chr1:17053819 . . 0 28 hm5C_associated_SNPs_2323 0 0 1 0 0 unknown 1 0.500231643921118 1 0.999536712157764 hm5C_site_5590 DeepMRMD:1;iRNA_m5C:0.999536712157764 5591 chr1 17053819 17053819 1 + G C rs5016505 17053813 + 17053793 17053833 41 AGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTC AGTGGTAGAATTCTCGCCTCCCACGTCGGAGACCCGGGTTC < 41bp 1 0.432400775268203 1 0.309444397687912 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053813 chr1:17053819 . . 0 27 hm5C_associated_SNPs_2324 0 0 1 0 0 unknown 1 0.500231643958487 1 0.999536712083025 hm5C_site_5591 DeepMRMD:1;iRNA_m5C:0.999536712083025 5592 chr1 17053819 17053819 1 + G C rs5016505 17053814 + 17053794 17053834 41 GTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTCA GTGGTAGAATTCTCGCCTCCCACGTCGGAGACCCGGGTTCA < 41bp 1 0.627261932500706 1 0.24745574593544 experiment 0.745476134998587 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053814 chr1:17053819 . . 0 26 hm5C_associated_SNPs_2325 0 0 1 0 0 unknown 1 0.500231643921543 1 0.999536712156914 hm5C_site_5592 DeepMRMD:1;iRNA_m5C:0.999536712156914 5593 chr1 17053819 17053819 1 + G C rs5016505 17053816 + 17053796 17053836 41 GGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTCAAT GGTAGAATTCTCGCCTCCCACGTCGGAGACCCGGGTTCAAT < 41bp 1 0.497889079761768 1 0.458627671003342 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053816 chr1:17053819 . . 0 24 hm5C_associated_SNPs_2326 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_5593 DeepMRMD:1;iRNA_m5C:0.999536712157814 5594 chr1 17053819 17053819 1 + G C rs5016505 17053825 + 17053805 17053845 41 CTCGCCTCCCACGTGGGAGACCCGGGTTCAATTCCCGGCCA CTCGCCTCCCACGTCGGAGACCCGGGTTCAATTCCCGGCCA < 41bp 1 0.699086562756907 1 0.252333283424377 experiment 0.601826874486186 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053825 chr1:17053819 . . 0 15 hm5C_associated_SNPs_2327 0 0 1 0 0 unknown 1 0.50023164323369 1 0.999536713532619 hm5C_site_5594 DeepMRMD:1;iRNA_m5C:0.999536713532619 5595 chr1 17053819 17053819 1 + G C rs5016505 17053827 + 17053807 17053847 41 CGCCTCCCACGTGGGAGACCCGGGTTCAATTCCCGGCCAAT CGCCTCCCACGTCGGAGACCCGGGTTCAATTCCCGGCCAAT < 41bp 1 0.58488732965142 1 0.827333807945251 experiment 0.830225340697161 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053827 chr1:17053819 . . 0 13 hm5C_associated_SNPs_2329 0 0 1 0 0 unknown 1 0.500231813615705 0.345332384109498 0.99953637276859 hm5C_site_5595 DeepMRMD:0.345332384109498;iRNA_m5C:0.99953637276859 5596 chr1 17053819 17053819 1 + G C rs5016505 17053839 + 17053819 17053859 41 GGGAGACCCGGGTTCAATTCCCGGCCAATGCAGCAGGTACT CGGAGACCCGGGTTCAATTCCCGGCCAATGCAGCAGGTACT < 41bp 1 0.263374846943503 1 0.875133037567139 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053839 chr1:17053819 . . 0 1 hm5C_associated_SNPs_2330 0 0 1 0 0 unknown 1 0.500231647271978 0.249733924865722 0.999536705456044 hm5C_site_5596 DeepMRMD:0.249733924865722;iRNA_m5C:0.999536705456044 5597 chr1 17053820 17053820 1 + G A rs531582564 17053807 + 17053787 17053827 41 TGGTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCC TGGTGCAGTGGTAGAATTCTCGCCTCCCACGTGAGAGACCC < 41bp 1 0.64662779389739 1 0.607231020927429 experiment 0.706744412205221 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053807 chr1:17053820 . . 0 34 hm5C_associated_SNPs_2332 0 0 1 0 0 unknown 1 0.500231642315895 0.785537958145142 0.999536715368209 hm5C_site_5597 DeepMRMD:0.785537958145142;iRNA_m5C:0.999536715368209 5598 chr1 17053820 17053820 1 + G A rs531582564 17053809 + 17053789 17053829 41 GTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGG GTGCAGTGGTAGAATTCTCGCCTCCCACGTGAGAGACCCGG < 41bp 1 0.0675461047225689 1 0.276100963354111 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053809 chr1:17053820 . . 0 32 hm5C_associated_SNPs_2333 0 0 1 0 0 unknown 1 0.500231643229244 1 0.999536713541513 hm5C_site_5598 DeepMRMD:1;iRNA_m5C:0.999536713541513 5599 chr1 17053820 17053820 1 + G A rs531582564 17053810 + 17053790 17053830 41 TGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGG TGCAGTGGTAGAATTCTCGCCTCCCACGTGAGAGACCCGGG < 41bp 1 0.222178825413376 1 0.805610179901123 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053810 chr1:17053820 . . 0 31 hm5C_associated_SNPs_2334 0 0 1 0 0 unknown 1 0.500231457324178 0.388779640197754 0.999537085351645 hm5C_site_5599 DeepMRMD:0.388779640197754;iRNA_m5C:0.999537085351645 5600 chr1 17053820 17053820 1 + G A rs531582564 17053812 + 17053792 17053832 41 CAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTT CAGTGGTAGAATTCTCGCCTCCCACGTGAGAGACCCGGGTT < 41bp 1 0.183393996934193 1 0.296599328517914 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053812 chr1:17053820 . . 0 29 hm5C_associated_SNPs_2335 0 0 1 0 0 unknown 1 0.500231643921108 1 0.999536712157785 hm5C_site_5600 DeepMRMD:1;iRNA_m5C:0.999536712157785 5601 chr1 17053820 17053820 1 + G A rs531582564 17053813 + 17053793 17053833 41 AGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTC AGTGGTAGAATTCTCGCCTCCCACGTGAGAGACCCGGGTTC < 41bp 1 0.448710993937974 1 0.348438084125519 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053813 chr1:17053820 . . 0 28 hm5C_associated_SNPs_2336 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_5601 DeepMRMD:1;iRNA_m5C:0.999536712157812 5602 chr1 17053820 17053820 1 + G A rs531582564 17053825 + 17053805 17053845 41 CTCGCCTCCCACGTGGGAGACCCGGGTTCAATTCCCGGCCA CTCGCCTCCCACGTGAGAGACCCGGGTTCAATTCCCGGCCA < 41bp 1 0.68056044752797 1 0.213574171066284 experiment 0.638879104944059 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053825 chr1:17053820 . . 0 16 hm5C_associated_SNPs_2339 0 0 1 0 0 unknown 1 0.500231511203557 1 0.999536977592886 hm5C_site_5602 DeepMRMD:1;iRNA_m5C:0.999536977592886 5603 chr1 17053820 17053820 1 + G A rs531582564 17053827 + 17053807 17053847 41 CGCCTCCCACGTGGGAGACCCGGGTTCAATTCCCGGCCAAT CGCCTCCCACGTGAGAGACCCGGGTTCAATTCCCGGCCAAT < 41bp 1 0.55037850218244 1 0.792680382728577 experiment 0.89924299563512 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053827 chr1:17053820 . . 0 14 hm5C_associated_SNPs_2341 0 0 1 0 0 unknown 1 0.500240988617574 0.414639234542846 0.999518022764851 hm5C_site_5603 DeepMRMD:0.414639234542846;iRNA_m5C:0.999518022764851 5604 chr1 17053820 17053820 1 + G A rs531582564 17053839 + 17053819 17053859 41 GGGAGACCCGGGTTCAATTCCCGGCCAATGCAGCAGGTACT GAGAGACCCGGGTTCAATTCCCGGCCAATGCAGCAGGTACT < 41bp 1 0.259397345385404 1 0.888049364089966 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053839 chr1:17053820 . . 0 2 hm5C_associated_SNPs_2342 0 0 1 0 0 unknown 1 0.500231653376164 0.223901271820068 0.999536693247673 hm5C_site_5604 DeepMRMD:0.223901271820068;iRNA_m5C:0.999536693247673 5605 chr1 17053820 17053820 1 + G A rs531582564 17053840 + 17053820 17053860 41 GGAGACCCGGGTTCAATTCCCGGCCAATGCAGCAGGTACTT AGAGACCCGGGTTCAATTCCCGGCCAATGCAGCAGGTACTT < 41bp 1 0.468734954752274 1 0.63255763053894 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053840 chr1:17053820 . . 0 1 hm5C_associated_SNPs_2343 0 0 1 0 0 unknown 1 0.500231643921092 0.73488473892212 0.999536712157815 hm5C_site_5605 DeepMRMD:0.73488473892212;iRNA_m5C:0.999536712157815 5606 chr1 17053824 17053824 1 + A T rs5016504 17053807 + 17053787 17053827 41 TGGTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCC TGGTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGTCCC < 41bp 1 0.653950862820451 1 0.460547834634781 experiment 0.692098274359097 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053807 chr1:17053824 . . 0 38 hm5C_associated_SNPs_2345 0 0 1 0 0 unknown 1 0.500231645374585 1 0.99953670925083 hm5C_site_5606 DeepMRMD:1;iRNA_m5C:0.99953670925083 5607 chr1 17053824 17053824 1 + A T rs5016504 17053809 + 17053789 17053829 41 GTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGG GTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGTCCCGG < 41bp 1 0.0680773096417441 1 0.153483062982559 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053809 chr1:17053824 . . 0 36 hm5C_associated_SNPs_2346 0 0 1 0 0 unknown 1 0.500231643393577 1 0.999536713212846 hm5C_site_5607 DeepMRMD:1;iRNA_m5C:0.999536713212846 5608 chr1 17053824 17053824 1 + A T rs5016504 17053810 + 17053790 17053830 41 TGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGG TGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGTCCCGGG < 41bp 1 0.229290626267245 1 0.822190046310425 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053810 chr1:17053824 . . 0 35 hm5C_associated_SNPs_2347 0 0 1 0 0 unknown 1 0.500231646989943 0.35561990737915 0.999536706020115 hm5C_site_5608 DeepMRMD:0.35561990737915;iRNA_m5C:0.999536706020115 5609 chr1 17053824 17053824 1 + A T rs5016504 17053812 + 17053792 17053832 41 CAGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTT CAGTGGTAGAATTCTCGCCTCCCACGTGGGAGTCCCGGGTT < 41bp 1 0.208880025623479 1 0.24141663312912 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053812 chr1:17053824 . . 0 33 hm5C_associated_SNPs_2348 0 0 1 0 0 unknown 1 0.500231643921467 1 0.999536712157066 hm5C_site_5609 DeepMRMD:1;iRNA_m5C:0.999536712157066 5610 chr1 17053824 17053824 1 + A T rs5016504 17053813 + 17053793 17053833 41 AGTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTC AGTGGTAGAATTCTCGCCTCCCACGTGGGAGTCCCGGGTTC < 41bp 1 0.499428734550583 1 0.559600710868835 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053813 chr1:17053824 . . 0 32 hm5C_associated_SNPs_2349 0 0 1 0 0 unknown 1 0.500231643853323 0.88079857826233 0.999536712293354 hm5C_site_5610 DeepMRMD:0.88079857826233;iRNA_m5C:0.999536712293354 5611 chr1 17053824 17053824 1 + A T rs5016504 17053814 + 17053794 17053834 41 GTGGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTCA GTGGTAGAATTCTCGCCTCCCACGTGGGAGTCCCGGGTTCA < 41bp 1 0.647158937590491 1 0.440376400947571 experiment 0.705682124819018 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053814 chr1:17053824 . . 0 31 hm5C_associated_SNPs_2350 0 0 1 0 0 unknown 1 0.500231643922295 1 0.999536712155409 hm5C_site_5611 DeepMRMD:1;iRNA_m5C:0.999536712155409 5612 chr1 17053824 17053824 1 + A T rs5016504 17053816 + 17053796 17053836 41 GGTAGAATTCTCGCCTCCCACGTGGGAGACCCGGGTTCAAT GGTAGAATTCTCGCCTCCCACGTGGGAGTCCCGGGTTCAAT < 41bp 1 0.689590087236293 1 0.724956452846527 experiment 0.620819825527414 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053816 chr1:17053824 . . 0 29 hm5C_associated_SNPs_2351 0 0 1 0 0 unknown 1 0.500231643921092 0.550087094306946 0.999536712157815 hm5C_site_5612 DeepMRMD:0.550087094306946;iRNA_m5C:0.999536712157815 5613 chr1 17053824 17053824 1 + A T rs5016504 17053827 + 17053807 17053847 41 CGCCTCCCACGTGGGAGACCCGGGTTCAATTCCCGGCCAAT CGCCTCCCACGTGGGAGTCCCGGGTTCAATTCCCGGCCAAT < 41bp 1 0.630815732511354 1 0.783005714416504 experiment 0.738368534977291 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053827 chr1:17053824 . . 0 18 hm5C_associated_SNPs_2354 0 0 1 0 0 unknown 1 0.500230722874079 0.433988571166992 0.999538554251842 hm5C_site_5613 DeepMRMD:0.433988571166992;iRNA_m5C:0.999538554251842 5614 chr1 17053824 17053824 1 + A T rs5016504 17053839 + 17053819 17053859 41 GGGAGACCCGGGTTCAATTCCCGGCCAATGCAGCAGGTACT GGGAGTCCCGGGTTCAATTCCCGGCCAATGCAGCAGGTACT < 41bp 1 0.271122832533683 1 0.867138504981995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053839 chr1:17053824 . . 0 6 hm5C_associated_SNPs_2355 0 0 1 0 0 unknown 1 0.500231623914015 0.26572299003601 0.999536752171969 hm5C_site_5614 DeepMRMD:0.26572299003601;iRNA_m5C:0.999536752171969 5615 chr1 17053824 17053824 1 + A T rs5016504 17053840 + 17053820 17053860 41 GGAGACCCGGGTTCAATTCCCGGCCAATGCAGCAGGTACTT GGAGTCCCGGGTTCAATTCCCGGCCAATGCAGCAGGTACTT < 41bp 1 0.435345278391341 1 0.57285463809967 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053840 chr1:17053824 . . 0 5 hm5C_associated_SNPs_2356 0 0 1 0 0 unknown 1 0.500231643903557 0.85429072380066 0.999536712192886 hm5C_site_5615 DeepMRMD:0.85429072380066;iRNA_m5C:0.999536712192886 5616 chr1 17053824 17053824 1 + A T rs5016504 17053843 + 17053823 17053863 41 GACCCGGGTTCAATTCCCGGCCAATGCAGCAGGTACTTCTT GTCCCGGGTTCAATTCCCGGCCAATGCAGCAGGTACTTCTT < 41bp 1 0.0591555203507032 1 0.17504221200943 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ESPNP;FAM231C ENSG00000268869;ENSG00000268991 intergenic Human other chr1:17053843 chr1:17053824 . . 0 2 hm5C_associated_SNPs_2357 0 0 1 0 0 unknown 1 0.500231643920707 1 0.999536712158586 hm5C_site_5616 DeepMRMD:1;iRNA_m5C:0.999536712158586 5617 chr1 17188438 17188438 1 + A C rs546189230 17188446 + 17188426 17188466 41 TTCAGTGGTAGAATTCTCGCCTCCCACGCGGGAGACCCGGG TTCAGTGGTAGACTTCTCGCCTCCCACGCGGGAGACCCGGG < 41bp 1 0.10700528125771 1 0.789346575737 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188446 chr1:17188438 . . 0 13 hm5C_associated_SNPs_2358 0 0 1 0 0 unknown 1 0.500231643920157 0.421306848526 0.999536712159687 hm5C_site_5617 DeepMRMD:0.421306848526;iRNA_m5C:0.999536712159687 5618 chr1 17188438 17188438 1 + A C rs546189230 17188452 + 17188432 17188472 41 GGTAGAATTCTCGCCTCCCACGCGGGAGACCCGGGTTCAAT GGTAGACTTCTCGCCTCCCACGCGGGAGACCCGGGTTCAAT < 41bp 1 0.67084772941474 1 0.756528377532959 experiment 0.65830454117052 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188452 chr1:17188438 . . 0 7 hm5C_associated_SNPs_2359 0 0 1 0 0 unknown 1 0.500231643921093 0.486943244934082 0.999536712157815 hm5C_site_5618 DeepMRMD:0.486943244934082;iRNA_m5C:0.999536712157815 5619 chr1 17188446 17188446 1 + C A rs552484036 17188461 + 17188441 17188481 41 CTCGCCTCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCA CTCGCATCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCA < 41bp 1 0.587605835770665 1 0.229719221591949 experiment 0.82478832845867 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188461 chr1:17188446 . . 0 6 hm5C_associated_SNPs_2363 0 0 1 0 0 unknown 1 0.500231643915244 1 0.999536712169512 hm5C_site_5619 DeepMRMD:1;iRNA_m5C:0.999536712169512 5620 chr1 17188446 17188446 1 + C A rs552484036 17188462 + 17188442 17188482 41 TCGCCTCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCAA TCGCATCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCAA < 41bp 1 0.634739885000272 1 0.730795383453369 experiment 0.730520229999456 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188462 chr1:17188446 . . 0 5 hm5C_associated_SNPs_2364 0 0 1 0 0 unknown 1 0.500231643935074 0.538409233093262 0.999536712129852 hm5C_site_5620 DeepMRMD:0.538409233093262;iRNA_m5C:0.999536712129852 5621 chr1 17188446 17188446 1 + C A rs552484036 17188463 + 17188443 17188483 41 CGCCTCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCAAT CGCATCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCAAT < 41bp 1 0.480607831938827 1 0.753916382789612 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188463 chr1:17188446 . . 0 4 hm5C_associated_SNPs_2365 0 0 1 0 0 unknown 1 0.500231643851069 0.492167234420776 0.999536712297862 hm5C_site_5621 DeepMRMD:0.492167234420776;iRNA_m5C:0.999536712297862 5622 chr1 17188453 17188453 1 + G A rs561928315 17188446 + 17188426 17188466 41 TTCAGTGGTAGAATTCTCGCCTCCCACGCGGGAGACCCGGG TTCAGTGGTAGAATTCTCGCCTCCCACACGGGAGACCCGGG < 41bp 1 0.0866209833151237 1 0.875242471694946 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188446 chr1:17188453 . . 0 28 hm5C_associated_SNPs_2366 0 0 1 0 0 unknown 1 0.500231636961711 0.249515056610108 0.999536726076578 hm5C_site_5622 DeepMRMD:0.249515056610108;iRNA_m5C:0.999536726076578 5623 chr1 17188453 17188453 1 + G A rs561928315 17188452 + 17188432 17188472 41 GGTAGAATTCTCGCCTCCCACGCGGGAGACCCGGGTTCAAT GGTAGAATTCTCGCCTCCCACACGGGAGACCCGGGTTCAAT < 41bp 1 0.664238659060758 1 0.698079288005829 experiment 0.671522681878484 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188452 chr1:17188453 . . 0 22 hm5C_associated_SNPs_2367 0 0 1 0 0 unknown 1 0.500231643921092 0.603841423988342 0.999536712157815 hm5C_site_5623 DeepMRMD:0.603841423988342;iRNA_m5C:0.999536712157815 5624 chr1 17188453 17188453 1 + G A rs561928315 17188461 + 17188441 17188481 41 CTCGCCTCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCA CTCGCCTCCCACACGGGAGACCCGGGTTCAATTCCCGGCCA < 41bp 1 0.485116601028788 1 0.170010149478912 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188461 chr1:17188453 . . 0 13 hm5C_associated_SNPs_2368 0 0 1 0 0 unknown 1 0.500231643920577 1 0.999536712158847 hm5C_site_5624 DeepMRMD:1;iRNA_m5C:0.999536712158847 5625 chr1 17188453 17188453 1 + G A rs561928315 17188462 + 17188442 17188482 41 TCGCCTCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCAA TCGCCTCCCACACGGGAGACCCGGGTTCAATTCCCGGCCAA < 41bp 1 0.556283655351425 1 0.656667351722717 experiment 0.88743268929715 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188462 chr1:17188453 . . 0 12 hm5C_associated_SNPs_2369 0 0 1 0 0 unknown 1 0.500231905687975 0.686665296554566 0.99953618862405 hm5C_site_5625 DeepMRMD:0.686665296554566;iRNA_m5C:0.99953618862405 5626 chr1 17188453 17188453 1 + G A rs561928315 17188463 + 17188443 17188483 41 CGCCTCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCAAT CGCCTCCCACACGGGAGACCCGGGTTCAATTCCCGGCCAAT < 41bp 1 0.472948501400074 1 0.52195942401886 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188463 chr1:17188453 . . 0 11 hm5C_associated_SNPs_2370 0 0 1 0 0 unknown 1 0.500231641678592 0.95608115196228 0.999536716642816 hm5C_site_5626 DeepMRMD:0.95608115196228;iRNA_m5C:0.999536716642816 5627 chr1 17188453 17188453 1 + G A rs561928315 17188469 + 17188449 17188489 41 CCACGCGGGAGACCCGGGTTCAATTCCCGGCCAATGCAAAA CCACACGGGAGACCCGGGTTCAATTCCCGGCCAATGCAAAA < 41bp 1 0.0813458521331519 1 0.0920045971870422 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188469 chr1:17188453 . . 0 5 hm5C_associated_SNPs_2371 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_5627 DeepMRMD:1;iRNA_m5C:0.999536712157814 5628 chr1 17188454 17188454 1 + C A rs530559305 17188446 + 17188426 17188466 41 TTCAGTGGTAGAATTCTCGCCTCCCACGCGGGAGACCCGGG TTCAGTGGTAGAATTCTCGCCTCCCACGAGGGAGACCCGGG < 41bp 1 0.094786235951599 1 0.541738092899323 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188446 chr1:17188454 . . 0 29 hm5C_associated_SNPs_2372 0 0 1 0 0 unknown 1 0.500231643627748 0.916523814201354 0.999536712744504 hm5C_site_5628 DeepMRMD:0.916523814201354;iRNA_m5C:0.999536712744504 5629 chr1 17188454 17188454 1 + C A rs530559305 17188452 + 17188432 17188472 41 GGTAGAATTCTCGCCTCCCACGCGGGAGACCCGGGTTCAAT GGTAGAATTCTCGCCTCCCACGAGGGAGACCCGGGTTCAAT < 41bp 1 0.674745001558779 1 0.881217777729034 experiment 0.650509996882441 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188452 chr1:17188454 . . 0 23 hm5C_associated_SNPs_2373 0 0 1 0 0 unknown 1 0.500231643921092 0.237564444541932 0.999536712157815 hm5C_site_5629 DeepMRMD:0.237564444541932;iRNA_m5C:0.999536712157815 5630 chr1 17188454 17188454 1 + C A rs530559305 17188461 + 17188441 17188481 41 CTCGCCTCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCA CTCGCCTCCCACGAGGGAGACCCGGGTTCAATTCCCGGCCA < 41bp 1 0.54105095064019 1 0.462991654872894 experiment 0.917898098719619 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188461 chr1:17188454 . . 0 14 hm5C_associated_SNPs_2374 0 0 1 0 0 unknown 1 0.500231643919365 1 0.999536712161271 hm5C_site_5630 DeepMRMD:1;iRNA_m5C:0.999536712161271 5631 chr1 17188454 17188454 1 + C A rs530559305 17188462 + 17188442 17188482 41 TCGCCTCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCAA TCGCCTCCCACGAGGGAGACCCGGGTTCAATTCCCGGCCAA < 41bp 1 0.585408456100549 1 0.795004844665527 experiment 0.829183087798901 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188462 chr1:17188454 . . 0 13 hm5C_associated_SNPs_2375 0 0 1 0 0 unknown 1 0.500231643921092 0.409990310668946 0.999536712157815 hm5C_site_5631 DeepMRMD:0.409990310668946;iRNA_m5C:0.999536712157815 5632 chr1 17188454 17188454 1 + C A rs530559305 17188463 + 17188443 17188483 41 CGCCTCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCAAT CGCCTCCCACGAGGGAGACCCGGGTTCAATTCCCGGCCAAT < 41bp 1 0.46606468022632 1 0.811122417449951 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188463 chr1:17188454 . . 0 12 hm5C_associated_SNPs_2376 0 0 1 0 0 unknown 1 0.500231651462043 0.377755165100098 0.999536697075914 hm5C_site_5632 DeepMRMD:0.377755165100098;iRNA_m5C:0.999536697075914 5633 chr1 17188454 17188454 1 + C A rs530559305 17188469 + 17188449 17188489 41 CCACGCGGGAGACCCGGGTTCAATTCCCGGCCAATGCAAAA CCACGAGGGAGACCCGGGTTCAATTCCCGGCCAATGCAAAA < 41bp 1 0.0932155667213547 1 0.063977986574173 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188469 chr1:17188454 . . 0 6 hm5C_associated_SNPs_2377 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_5633 DeepMRMD:1;iRNA_m5C:0.999536712157815 5634 chr1 17188454 17188454 1 + C A rs530559305 17188474 + 17188454 17188494 41 CGGGAGACCCGGGTTCAATTCCCGGCCAATGCAAAAGGGTC AGGGAGACCCGGGTTCAATTCCCGGCCAATGCAAAAGGGTC < 41bp 1 0.312970761829997 1 0.886191427707672 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188474 chr1:17188454 . . 0 1 hm5C_associated_SNPs_2378 0 0 1 0 0 unknown 1 0.500231643921092 0.227617144584656 0.999536712157815 hm5C_site_5634 DeepMRMD:0.227617144584656;iRNA_m5C:0.999536712157815 5635 chr1 17188459 17188459 1 + G A rs546934057 17188446 + 17188426 17188466 41 TTCAGTGGTAGAATTCTCGCCTCCCACGCGGGAGACCCGGG TTCAGTGGTAGAATTCTCGCCTCCCACGCGGGAAACCCGGG < 41bp 1 0.0849813865291165 1 0.815523982048035 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188446 chr1:17188459 . . 0 34 hm5C_associated_SNPs_2379 0 0 1 0 0 unknown 1 0.500231643875272 0.36895203590393 0.999536712249455 hm5C_site_5635 DeepMRMD:0.36895203590393;iRNA_m5C:0.999536712249455 5636 chr1 17188459 17188459 1 + G A rs546934057 17188461 + 17188441 17188481 41 CTCGCCTCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCA CTCGCCTCCCACGCGGGAAACCCGGGTTCAATTCCCGGCCA < 41bp 1 0.637053132732538 1 0.265027284622192 experiment 0.725893734534924 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188461 chr1:17188459 . . 0 19 hm5C_associated_SNPs_2382 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5636 DeepMRMD:1;iRNA_m5C:0.999536712157815 5637 chr1 17188459 17188459 1 + G A rs546934057 17188463 + 17188443 17188483 41 CGCCTCCCACGCGGGAGACCCGGGTTCAATTCCCGGCCAAT CGCCTCCCACGCGGGAAACCCGGGTTCAATTCCCGGCCAAT < 41bp 1 0.546085436074043 1 0.727984249591827 experiment 0.907829127851913 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188463 chr1:17188459 . . 0 17 hm5C_associated_SNPs_2384 0 0 1 0 0 unknown 1 0.500231643921092 0.544031500816346 0.999536712157816 hm5C_site_5637 DeepMRMD:0.544031500816346;iRNA_m5C:0.999536712157816 5638 chr1 17188459 17188459 1 + G A rs546934057 17188469 + 17188449 17188489 41 CCACGCGGGAGACCCGGGTTCAATTCCCGGCCAATGCAAAA CCACGCGGGAAACCCGGGTTCAATTCCCGGCCAATGCAAAA < 41bp 1 0.0772943642251457 1 0.0872287154197693 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188469 chr1:17188459 . . 0 11 hm5C_associated_SNPs_2385 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_5638 DeepMRMD:1;iRNA_m5C:0.999536712157815 5639 chr1 17188459 17188459 1 + G A rs546934057 17188474 + 17188454 17188494 41 CGGGAGACCCGGGTTCAATTCCCGGCCAATGCAAAAGGGTC CGGGAAACCCGGGTTCAATTCCCGGCCAATGCAAAAGGGTC < 41bp 1 0.291532300306581 1 0.862794876098633 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188474 chr1:17188459 . . 0 6 hm5C_associated_SNPs_2386 0 0 1 0 0 unknown 1 0.500231643921092 0.274410247802734 0.999536712157815 hm5C_site_5639 DeepMRMD:0.274410247802734;iRNA_m5C:0.999536712157815 5640 chr1 17188459 17188459 1 + G A rs546934057 17188476 + 17188456 17188496 41 GGAGACCCGGGTTCAATTCCCGGCCAATGCAAAAGGGTCTT GGAAACCCGGGTTCAATTCCCGGCCAATGCAAAAGGGTCTT < 41bp 1 0.294394440795175 1 0.546615779399872 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188476 chr1:17188459 . . 0 4 hm5C_associated_SNPs_2387 0 0 1 0 0 unknown 1 0.500231643921092 0.906768441200256 0.999536712157815 hm5C_site_5640 DeepMRMD:0.906768441200256;iRNA_m5C:0.999536712157815 5641 chr1 17188459 17188459 1 + G A rs546934057 17188479 + 17188459 17188499 41 GACCCGGGTTCAATTCCCGGCCAATGCAAAAGGGTCTTTTT AACCCGGGTTCAATTCCCGGCCAATGCAAAAGGGTCTTTTT < 41bp 1 0.0265375950800509 1 0.104426711797714 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3675;LOC440570 ENSG00000230239;ENSG00000228549 intergenic Human other chr1:17188479 chr1:17188459 . . 0 1 hm5C_associated_SNPs_2388 0 0 1 0 0 unknown 1 0.500231643921009 1 0.999536712157983 hm5C_site_5641 DeepMRMD:1;iRNA_m5C:0.999536712157983 5642 chr1 17199074 17199074 1 + T A rs2997815 17199089 + 17199069 17199109 41 TCCTGTGTGTCCCTGGTGGTCTAGTGGCTAGGATTCGGCGC TCCTGAGTGTCCCTGGTGGTCTAGTGGCTAGGATTCGGCGC < 41bp 1 0.596186838383136 1 0.635932743549347 experiment 0.807626323233727 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199089 chr1:17199074 . . 0 6 hm5C_associated_SNPs_2389 0 0 0 0 0 unknown 1 0.500231643988903 0.728134512901306 0.999536712022194 hm5C_site_5642 DeepMRMD:0.728134512901306;iRNA_m5C:0.999536712022194 5643 chr1 17199076 17199076 1 + T A rs2990570 17199089 + 17199069 17199109 41 TCCTGTGTGTCCCTGGTGGTCTAGTGGCTAGGATTCGGCGC TCCTGTGAGTCCCTGGTGGTCTAGTGGCTAGGATTCGGCGC < 41bp 1 0.575565689975648 1 0.772829413414001 experiment 0.848868620048705 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199089 chr1:17199076 . . 0 8 hm5C_associated_SNPs_2390 0 0 0 0 0 unknown 1 0.500233901000993 0.454341173171998 0.999532197998015 hm5C_site_5643 DeepMRMD:0.454341173171998;iRNA_m5C:0.999532197998015 5644 chr1 17199083 17199083 1 + G C rs558994459 17199089 + 17199069 17199109 41 TCCTGTGTGTCCCTGGTGGTCTAGTGGCTAGGATTCGGCGC TCCTGTGTGTCCCTCGTGGTCTAGTGGCTAGGATTCGGCGC < 41bp 1 0.568433430504912 1 0.693278908729553 experiment 0.863133138990177 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199089 chr1:17199083 . . 0 15 hm5C_associated_SNPs_2391 0 0 1 0 0 unknown 1 0.500299640755751 0.613442182540894 0.999400718488497 hm5C_site_5644 DeepMRMD:0.613442182540894;iRNA_m5C:0.999400718488497 5645 chr1 17199123 17199123 1 + G A rs12047619 17199107 + 17199087 17199127 41 GTCTAGTGGCTAGGATTCGGCGCTTTCACCGCCGCGGCCCG GTCTAGTGGCTAGGATTCGGCGCTTTCACCGCCGCGACCCG < 41bp 1 0.212328503113271 1 0.204558223485947 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199107 chr1:17199123 . . 0 37 hm5C_associated_SNPs_2392 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5645 DeepMRMD:1;iRNA_m5C:0.999536712157815 5646 chr1 17199123 17199123 1 + G A rs12047619 17199109 + 17199089 17199129 41 CTAGTGGCTAGGATTCGGCGCTTTCACCGCCGCGGCCCGGG CTAGTGGCTAGGATTCGGCGCTTTCACCGCCGCGACCCGGG < 41bp 1 0.0147965285555704 1 0.0471420586109161 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199109 chr1:17199123 . . 0 35 hm5C_associated_SNPs_2393 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_5646 DeepMRMD:1;iRNA_m5C:0.999536712157815 5647 chr1 17199123 17199123 1 + G A rs12047619 17199113 + 17199093 17199133 41 TGGCTAGGATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCG TGGCTAGGATTCGGCGCTTTCACCGCCGCGACCCGGGTTCG < 41bp 1 0.675110281305181 1 0.284040004014969 experiment 0.649779437389637 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199113 chr1:17199123 . . 0 31 hm5C_associated_SNPs_2394 0 0 1 0 0 unknown 1 0.500231643924737 1 0.999536712150526 hm5C_site_5647 DeepMRMD:1;iRNA_m5C:0.999536712150526 5648 chr1 17199123 17199123 1 + G A rs12047619 17199115 + 17199095 17199135 41 GCTAGGATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCGAT GCTAGGATTCGGCGCTTTCACCGCCGCGACCCGGGTTCGAT < 41bp 1 0.284799797532175 1 0.392137587070465 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199115 chr1:17199123 . . 0 29 hm5C_associated_SNPs_2395 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157813 hm5C_site_5648 DeepMRMD:1;iRNA_m5C:0.999536712157813 5649 chr1 17199123 17199123 1 + G A rs12047619 17199116 + 17199096 17199136 41 CTAGGATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCGATT CTAGGATTCGGCGCTTTCACCGCCGCGACCCGGGTTCGATT < 41bp 1 0.462357805600205 1 0.85518890619278 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199116 chr1:17199123 . . 0 28 hm5C_associated_SNPs_2396 0 0 1 0 0 unknown 1 0.500231643550137 0.28962218761444 0.999536712899725 hm5C_site_5649 DeepMRMD:0.28962218761444;iRNA_m5C:0.999536712899725 5650 chr1 17199123 17199123 1 + G A rs12047619 17199118 + 17199098 17199138 41 AGGATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCC AGGATTCGGCGCTTTCACCGCCGCGACCCGGGTTCGATTCC < 41bp 1 0.251676072611449 1 0.851165413856506 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199118 chr1:17199123 . . 0 26 hm5C_associated_SNPs_2397 0 0 1 0 0 unknown 1 0.500231643921036 0.297669172286988 0.999536712157928 hm5C_site_5650 DeepMRMD:0.297669172286988;iRNA_m5C:0.999536712157928 5651 chr1 17199123 17199123 1 + G A rs12047619 17199119 + 17199099 17199139 41 GGATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCC GGATTCGGCGCTTTCACCGCCGCGACCCGGGTTCGATTCCC < 41bp 1 0.639098651107743 1 0.895704984664917 experiment 0.721802697784514 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199119 chr1:17199123 . . 0 25 hm5C_associated_SNPs_2398 0 0 1 0 0 unknown 1 0.500231643371219 0.208590030670166 0.999536713257562 hm5C_site_5651 DeepMRMD:0.208590030670166;iRNA_m5C:0.999536713257562 5652 chr1 17199123 17199123 1 + G A rs12047619 17199121 + 17199101 17199141 41 ATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGG ATTCGGCGCTTTCACCGCCGCGACCCGGGTTCGATTCCCGG < 41bp 1 0.145750182581336 1 0.34496608376503 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199121 chr1:17199123 . . 0 23 hm5C_associated_SNPs_2399 0 0 1 0 0 unknown 1 0.500231644043303 1 0.999536711913393 hm5C_site_5652 DeepMRMD:1;iRNA_m5C:0.999536711913393 5653 chr1 17199123 17199123 1 + G A rs12047619 17199124 + 17199104 17199144 41 CGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGGCCA CGGCGCTTTCACCGCCGCGACCCGGGTTCGATTCCCGGCCA < 41bp 1 0.554917305670725 1 0.435720473527908 experiment 0.89016538865855 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199124 chr1:17199123 . . 0 20 hm5C_associated_SNPs_2400 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_5653 DeepMRMD:1;iRNA_m5C:0.999536712157815 5654 chr1 17199123 17199123 1 + G A rs12047619 17199125 + 17199105 17199145 41 GGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGGCCAG GGCGCTTTCACCGCCGCGACCCGGGTTCGATTCCCGGCCAG < 41bp 1 0.68634584558986 1 0.652141153812408 experiment 0.627308308820281 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199125 chr1:17199123 . . 0 19 hm5C_associated_SNPs_2401 0 0 1 0 0 unknown 1 0.500231642869363 0.695717692375184 0.999536714261275 hm5C_site_5654 DeepMRMD:0.695717692375184;iRNA_m5C:0.999536714261275 5655 chr1 17199123 17199123 1 + G A rs12047619 17199126 + 17199106 17199146 41 GCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGGCCAGG GCGCTTTCACCGCCGCGACCCGGGTTCGATTCCCGGCCAGG < 41bp 1 0.499463125798377 1 0.794880986213684 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199126 chr1:17199123 . . 0 18 hm5C_associated_SNPs_2402 0 0 1 0 0 unknown 1 0.500231643921093 0.410238027572632 0.999536712157815 hm5C_site_5655 DeepMRMD:0.410238027572632;iRNA_m5C:0.999536712157815 5656 chr1 17199123 17199123 1 + G A rs12047619 17199132 + 17199112 17199152 41 TCACCGCCGCGGCCCGGGTTCGATTCCCGGCCAGGGAATTG TCACCGCCGCGACCCGGGTTCGATTCCCGGCCAGGGAATTG < 41bp 1 0.128728030055114 1 0.0154149830341339 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199132 chr1:17199123 . . 0 12 hm5C_associated_SNPs_2403 0 0 1 0 0 unknown 1 0.500231643506755 1 0.99953671298649 hm5C_site_5656 DeepMRMD:1;iRNA_m5C:0.99953671298649 5657 chr1 17199123 17199123 1 + G A rs12047619 17199137 + 17199117 17199157 41 GCCGCGGCCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTA GCCGCGACCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTA < 41bp 1 0.4667979969309 1 0.765262544155121 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199137 chr1:17199123 . . 0 7 hm5C_associated_SNPs_2404 0 0 1 0 0 unknown 1 0.500231643921092 0.469474911689758 0.999536712157816 hm5C_site_5657 DeepMRMD:0.469474911689758;iRNA_m5C:0.999536712157816 5658 chr1 17199123 17199123 1 + G A rs12047619 17199138 + 17199118 17199158 41 CCGCGGCCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTAC CCGCGACCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTAC < 41bp 1 0.267426929544101 1 0.494120717048645 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199138 chr1:17199123 . . 0 6 hm5C_associated_SNPs_2405 0 0 1 0 0 unknown 1 0.500231643921088 1 0.999536712157824 hm5C_site_5658 DeepMRMD:1;iRNA_m5C:0.999536712157824 5659 chr1 17199123 17199123 1 + G A rs12047619 17199139 + 17199119 17199159 41 CGCGGCCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTACA CGCGACCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTACA < 41bp 1 0.314768170182341 1 0.155617505311966 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199139 chr1:17199123 . . 0 5 hm5C_associated_SNPs_2406 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5659 DeepMRMD:1;iRNA_m5C:0.999536712157815 5660 chr1 17199123 17199123 1 + G A rs12047619 17199143 + 17199123 17199163 41 GCCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTACACTGG ACCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTACACTGG < 41bp 1 0.573884920011246 1 0.527373909950256 experiment 0.852230159977508 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199143 chr1:17199123 . . 0 1 hm5C_associated_SNPs_2407 0 0 1 0 0 unknown 1 0.500231643021288 0.945252180099488 0.999536713957424 hm5C_site_5660 DeepMRMD:0.945252180099488;iRNA_m5C:0.999536713957424 5661 chr1 17199141 17199141 1 + G A rs563531853 17199121 + 17199101 17199141 41 ATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGG ATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGA < 41bp 1 0.225379294208998 1 0.375077217817307 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199121 chr1:17199141 . . 0 41 hm5C_associated_SNPs_2408 0 0 1 1 0 unknown 1 0.500231643925905 1 0.99953671214819 hm5C_site_5661 DeepMRMD:1;iRNA_m5C:0.99953671214819 5662 chr1 17199141 17199141 1 + G A rs563531853 17199124 + 17199104 17199144 41 CGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGGCCA CGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGACCA < 41bp 1 0.536337660632911 1 0.387405425310135 experiment 0.927324678734178 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199124 chr1:17199141 . . 0 38 hm5C_associated_SNPs_2409 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5662 DeepMRMD:1;iRNA_m5C:0.999536712157815 5663 chr1 17199141 17199141 1 + G A rs563531853 17199125 + 17199105 17199145 41 GGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGGCCAG GGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGACCAG < 41bp 1 0.574202808270216 1 0.478431761264801 experiment 0.851594383459567 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199125 chr1:17199141 . . 0 37 hm5C_associated_SNPs_2410 0 0 1 1 0 unknown 1 0.500231643921408 1 0.999536712157184 hm5C_site_5663 DeepMRMD:1;iRNA_m5C:0.999536712157184 5664 chr1 17199141 17199141 1 + G A rs563531853 17199126 + 17199106 17199146 41 GCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGGCCAGG GCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGACCAGG < 41bp 1 0.394939088160567 1 0.543634057044983 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199126 chr1:17199141 . . 0 36 hm5C_associated_SNPs_2411 0 0 1 1 0 unknown 1 0.500231643921093 0.912731885910034 0.999536712157814 hm5C_site_5664 DeepMRMD:0.912731885910034;iRNA_m5C:0.999536712157814 5665 chr1 17199141 17199141 1 + G A rs563531853 17199132 + 17199112 17199152 41 TCACCGCCGCGGCCCGGGTTCGATTCCCGGCCAGGGAATTG TCACCGCCGCGGCCCGGGTTCGATTCCCGACCAGGGAATTG < 41bp 1 0.150108398192384 1 0.0449329614639282 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199132 chr1:17199141 . . 0 30 hm5C_associated_SNPs_2412 0 0 1 1 0 unknown 1 0.500231290934653 1 0.999537418130693 hm5C_site_5665 DeepMRMD:1;iRNA_m5C:0.999537418130693 5666 chr1 17199141 17199141 1 + G A rs563531853 17199137 + 17199117 17199157 41 GCCGCGGCCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTA GCCGCGGCCCGGGTTCGATTCCCGACCAGGGAATTGTTTTA < 41bp 1 0.517751436618736 1 0.802772521972656 experiment 0.964497126762528 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199137 chr1:17199141 . . 0 25 hm5C_associated_SNPs_2413 0 0 1 1 0 unknown 1 0.500231643921092 0.394454956054688 0.999536712157816 hm5C_site_5666 DeepMRMD:0.394454956054688;iRNA_m5C:0.999536712157816 5667 chr1 17199141 17199141 1 + G A rs563531853 17199138 + 17199118 17199158 41 CCGCGGCCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTAC CCGCGGCCCGGGTTCGATTCCCGACCAGGGAATTGTTTTAC < 41bp 1 0.121957900475333 1 0.368544161319733 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199138 chr1:17199141 . . 0 24 hm5C_associated_SNPs_2414 0 0 1 1 0 unknown 1 0.500231643923655 1 0.999536712152689 hm5C_site_5667 DeepMRMD:1;iRNA_m5C:0.999536712152689 5668 chr1 17199141 17199141 1 + G A rs563531853 17199139 + 17199119 17199159 41 CGCGGCCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTACA CGCGGCCCGGGTTCGATTCCCGACCAGGGAATTGTTTTACA < 41bp 1 0.215191316809816 1 0.185645788908005 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199139 chr1:17199141 . . 0 23 hm5C_associated_SNPs_2415 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5668 DeepMRMD:1;iRNA_m5C:0.999536712157815 5669 chr1 17199141 17199141 1 + G A rs563531853 17199143 + 17199123 17199163 41 GCCCGGGTTCGATTCCCGGCCAGGGAATTGTTTTACACTGG GCCCGGGTTCGATTCCCGACCAGGGAATTGTTTTACACTGG < 41bp 1 0.66811938429446 1 0.746017694473267 experiment 0.663761231411079 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LOC440570 ENSG00000228549 ncRNA_exonic Human lincRNA chr1:17199143 chr1:17199141 . . 0 19 hm5C_associated_SNPs_2416 0 0 1 1 0 unknown 1 0.500231643917757 0.507964611053466 0.999536712164485 hm5C_site_5669 DeepMRMD:0.507964611053466;iRNA_m5C:0.999536712164485 5670 chr1 17216212 17216212 1 + C A rs571173747 17216228 + 17216208 17216248 41 TAACCGAAAGATTGGTGGTTCGAGCCCACCCAGGGACGCTT TAACAGAAAGATTGGTGGTTCGAGCCCACCCAGGGACGCTT < 41bp 1 0.229060931121006 1 0.421404778957367 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105376805 ENSG00000238142;ENSG00000235241 upstream;downstream Human other chr1:17216228 chr1:17216212 . . 0 5 hm5C_associated_SNPs_2417 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_5670 DeepMRMD:1;iRNA_m5C:0.999536712157816 5671 chr1 17216236 17216236 1 + C A rs377537786 17216228 + 17216208 17216248 41 TAACCGAAAGATTGGTGGTTCGAGCCCACCCAGGGACGCTT TAACCGAAAGATTGGTGGTTCGAGCCCAACCAGGGACGCTT < 41bp 1 0.213230093002667 1 0.432523161172867 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105376805 ENSG00000238142;ENSG00000235241 upstream;downstream Human other chr1:17216228 chr1:17216236 . . 0 29 hm5C_associated_SNPs_2418 0 0 1 0 0 unknown 1 0.50023164392111 1 0.999536712157781 hm5C_site_5671 DeepMRMD:1;iRNA_m5C:0.999536712157781 5672 chr1 17216236 17216236 1 + C A rs377537786 17216233 + 17216213 17216253 41 GAAAGATTGGTGGTTCGAGCCCACCCAGGGACGCTTATTGG GAAAGATTGGTGGTTCGAGCCCAACCAGGGACGCTTATTGG < 41bp 1 0.0310970457043247 1 0.110432118177414 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105376805 ENSG00000238142;ENSG00000235241 upstream;downstream Human other chr1:17216233 chr1:17216236 . . 0 24 hm5C_associated_SNPs_2419 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5672 DeepMRMD:1;iRNA_m5C:0.999536712157815 5673 chr1 17216240 17216240 1 + G C rs192795893 17216228 + 17216208 17216248 41 TAACCGAAAGATTGGTGGTTCGAGCCCACCCAGGGACGCTT TAACCGAAAGATTGGTGGTTCGAGCCCACCCACGGACGCTT < 41bp 1 0.233317387580496 1 0.33130931854248 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105376805 ENSG00000238142;ENSG00000235241 upstream;downstream Human other chr1:17216228 chr1:17216240 . . 0 33 hm5C_associated_SNPs_2420 0 0 1 0 0 unknown 1 0.500231643919255 1 0.99953671216149 hm5C_site_5673 DeepMRMD:1;iRNA_m5C:0.99953671216149 5674 chr1 17216240 17216240 1 + G C rs192795893 17216233 + 17216213 17216253 41 GAAAGATTGGTGGTTCGAGCCCACCCAGGGACGCTTATTGG GAAAGATTGGTGGTTCGAGCCCACCCACGGACGCTTATTGG < 41bp 1 0.0353389440176956 1 0.119972229003906 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105376805 ENSG00000238142;ENSG00000235241 upstream;downstream Human other chr1:17216233 chr1:17216240 . . 0 28 hm5C_associated_SNPs_2421 0 0 1 0 0 unknown 1 0.50023164391924 1 0.999536712161521 hm5C_site_5674 DeepMRMD:1;iRNA_m5C:0.999536712161521 5675 chr1 17216244 17216244 1 + C T rs71644016 17216228 + 17216208 17216248 41 TAACCGAAAGATTGGTGGTTCGAGCCCACCCAGGGACGCTT TAACCGAAAGATTGGTGGTTCGAGCCCACCCAGGGATGCTT < 41bp 1 0.193484041907698 1 0.384996384382248 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105376805 ENSG00000238142;ENSG00000235241 upstream;downstream Human other chr1:17216228 chr1:17216244 . . 0 37 hm5C_associated_SNPs_2422 0 0 1 0 0 unknown 1 0.500231643921095 1 0.99953671215781 hm5C_site_5675 DeepMRMD:1;iRNA_m5C:0.99953671215781 5676 chr1 17216244 17216244 1 + C T rs71644016 17216233 + 17216213 17216253 41 GAAAGATTGGTGGTTCGAGCCCACCCAGGGACGCTTATTGG GAAAGATTGGTGGTTCGAGCCCACCCAGGGATGCTTATTGG < 41bp 1 0.0431240445443278 1 0.0890945792198181 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105376805 ENSG00000238142;ENSG00000235241 upstream;downstream Human other chr1:17216233 chr1:17216244 . . 0 32 hm5C_associated_SNPs_2423 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5676 DeepMRMD:1;iRNA_m5C:0.999536712157815 5677 chr1 17265601 17265601 1 + C T rs146792981 17265609 + 17265589 17265629 41 GCTCGCCCTGATCCACTCCGCCCTGCACAAGCGCCAGCTGC GCTCGCCCTGATTCACTCCGCCCTGCACAAGCGCCAGCTGC < 41bp 1 0.0859157491126399 1 0.225071310997009 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17265609 chr1:17265601 synonymous SNV . 0 13 hm5C_associated_SNPs_2424 0 0 0 0 1 chromatin 1 0.500231764656487 1 0.999536470687027 hm5C_site_5677 DeepMRMD:1;iRNA_m5C:0.999536470687027 5678 chr1 17949640 17949640 1 + C T rs560500744 17949656 + 17949636 17949676 41 CCACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGGTAAGT CCACTGAGAAGATCGGGGACCTCTTCGTGGCCTCGGTAAGT < 41bp 1 0.123884953931909 1 0.0298303365707397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17949656 chr1:17949640 synonymous SNV . 0 5 hm5C_associated_SNPs_2425 0 0 1 0 1 Nucleus 1 0.500231644091936 1 0.999536711816128 hm5C_site_5678 DeepMRMD:1;iRNA_m5C:0.999536711816128 5679 chr1 17949661 17949661 1 + C T rs142153324 17949656 + 17949636 17949676 41 CCACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGGTAAGT CCACCGAGAAGATCGGGGACCTCTTTGTGGCCTCGGTAAGT < 41bp 1 0.161651370068853 1 0.0501843988895416 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17949656 chr1:17949661 synonymous SNV . 0 26 hm5C_associated_SNPs_2426 0 0 1 0 1 Nucleus 1 0.500231643927086 1 0.999536712145827 hm5C_site_5679 DeepMRMD:1;iRNA_m5C:0.999536712145827 5680 chr1 19072750 19072750 1 + C T rs527848106 19072736 + 19072716 19072756 41 TCCATCTTGGCCAAGAGGTCCCTGCCTCCTGATCCGGCACA TCCATCTTGGCCAAGAGGTCCCTGCCTCCTGATCTGGCACA < 41bp 1 0.0375174804116864 1 0.0569567084312439 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAX7 ENSG00000009709 UTR3 Human protein_coding chr1:19072736 chr1:19072750 . . 0 35 hm5C_associated_SNPs_2427 0 0 0 0 0 exosome 1 0.500231648884029 1 0.999536702231942 hm5C_site_5680 DeepMRMD:1;iRNA_m5C:0.999536702231942 5681 chr1 19586496 19586496 1 + G A rs183580037 19586515 + 19586495 19586535 41 CGATCTACCCACCTTGGCCTCCCAAAGTGCTGGGATTATAG CAATCTACCCACCTTGGCCTCCCAAAGTGCTGGGATTATAG < 41bp 1 0.440052364542119 1 0.0626196265220642 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MRTO4 ENSG00000053372 UTR3 Human protein_coding chr1:19586515 chr1:19586496 . . 0 2 hm5C_associated_SNPs_2428 0 0 1 0 0 Ribosome 1 0.500231643934038 1 0.999536712131925 hm5C_site_5681 DeepMRMD:1;iRNA_m5C:0.999536712131925 5682 chr1 19586496 19586496 1 + G A rs183580037 19586516 + 19586496 19586536 41 GATCTACCCACCTTGGCCTCCCAAAGTGCTGGGATTATAGG AATCTACCCACCTTGGCCTCCCAAAGTGCTGGGATTATAGG < 41bp 1 0.460072517630191 1 0.136659234762192 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MRTO4 ENSG00000053372 UTR3 Human protein_coding chr1:19586516 chr1:19586496 . . 0 1 hm5C_associated_SNPs_2429 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5682 DeepMRMD:1;iRNA_m5C:0.999536712157815 5683 chr1 19934898 19934898 1 + C G rs149838191 19934893 + 19934873 19934913 41 GTATCATTGCCCTACACATCCAACTCCGGGCCACAGGAGGA GTATCATTGCCCTACACATCCAACTGCGGGCCACAGGAGGA < 41bp 1 0.528261757358474 1 0.124638468027115 experiment 0.943476485283053 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS14P3 ENSG00000226396 ncRNA_exonic Human processed_pseudogene chr1:19934893 chr1:19934898 . . 0 26 hm5C_associated_SNPs_2430 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5683 DeepMRMD:1;iRNA_m5C:0.999536712157815 5684 chr1 19934899 19934899 1 + C T rs180924547 19934893 + 19934873 19934913 41 GTATCATTGCCCTACACATCCAACTCCGGGCCACAGGAGGA GTATCATTGCCCTACACATCCAACTCTGGGCCACAGGAGGA < 41bp 1 0.465608803638187 1 0.0744744837284088 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS14P3 ENSG00000226396 ncRNA_exonic Human processed_pseudogene chr1:19934893 chr1:19934899 . . 0 27 hm5C_associated_SNPs_2431 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5684 DeepMRMD:1;iRNA_m5C:0.999536712157815 5685 chr1 19934900 19934900 1 + G A rs61740466 19934893 + 19934873 19934913 41 GTATCATTGCCCTACACATCCAACTCCGGGCCACAGGAGGA GTATCATTGCCCTACACATCCAACTCCAGGCCACAGGAGGA < 41bp 1 0.377637985995004 1 0.0838013887405396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS14P3 ENSG00000226396 ncRNA_exonic Human processed_pseudogene chr1:19934893 chr1:19934900 . . 0 28 hm5C_associated_SNPs_2432 0 1 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5685 DeepMRMD:1;iRNA_m5C:0.999536712157815 5686 chr1 19935005 19935005 1 + C G rs377011513 19935013 + 19934993 19935033 41 TTGAGGACGTCACCCCCATCCCCTCTGACAGCACTCTCAGG TTGAGGACGTCAGCCCCATCCCCTCTGACAGCACTCTCAGG < 41bp 1 0.112304755944313 1 0.211539268493652 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS14P3 ENSG00000226396 ncRNA_exonic Human processed_pseudogene chr1:19935013 chr1:19935005 . . 0 13 hm5C_associated_SNPs_2433 0 0 1 0 0 unknown 1 0.500231644157408 1 0.999536711685184 hm5C_site_5686 DeepMRMD:1;iRNA_m5C:0.999536711685184 5687 chr1 19935005 19935005 1 + C G rs377011513 19935014 + 19934994 19935034 41 TGAGGACGTCACCCCCATCCCCTCTGACAGCACTCTCAGGA TGAGGACGTCAGCCCCATCCCCTCTGACAGCACTCTCAGGA < 41bp 1 0.157616268018664 1 0.198295503854752 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS14P3 ENSG00000226396 ncRNA_exonic Human processed_pseudogene chr1:19935014 chr1:19935005 . . 0 12 hm5C_associated_SNPs_2434 0 0 1 0 0 unknown 1 0.500231648569654 1 0.999536702860691 hm5C_site_5687 DeepMRMD:1;iRNA_m5C:0.999536702860691 5688 chr1 19935005 19935005 1 + C G rs377011513 19935015 + 19934995 19935035 41 GAGGACGTCACCCCCATCCCCTCTGACAGCACTCTCAGGAA GAGGACGTCAGCCCCATCCCCTCTGACAGCACTCTCAGGAA < 41bp 1 0.453748679033716 1 0.388395190238953 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS14P3 ENSG00000226396 ncRNA_exonic Human processed_pseudogene chr1:19935015 chr1:19935005 . . 0 11 hm5C_associated_SNPs_2435 0 0 1 0 0 unknown 1 0.500231658797143 1 0.999536682405713 hm5C_site_5688 DeepMRMD:1;iRNA_m5C:0.999536682405713 5689 chr1 19935005 19935005 1 + C G rs377011513 19935017 + 19934997 19935037 41 GGACGTCACCCCCATCCCCTCTGACAGCACTCTCAGGAAGG GGACGTCAGCCCCATCCCCTCTGACAGCACTCTCAGGAAGG < 41bp 1 0.295070847568938 1 0.113270282745361 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS14P3 ENSG00000226396 ncRNA_exonic Human processed_pseudogene chr1:19935017 chr1:19935005 . . 0 9 hm5C_associated_SNPs_2436 0 0 1 0 0 unknown 1 0.50086179860659 1 0.998276402786819 hm5C_site_5689 DeepMRMD:1;iRNA_m5C:0.998276402786819 5690 chr1 19935005 19935005 1 + C G rs377011513 19935021 + 19935001 19935041 41 GTCACCCCCATCCCCTCTGACAGCACTCTCAGGAAGGGGGT GTCAGCCCCATCCCCTCTGACAGCACTCTCAGGAAGGGGGT < 41bp 1 0.67286270667395 1 0.270526051521301 experiment 0.654274586652101 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS14P3 ENSG00000226396 ncRNA_exonic Human processed_pseudogene chr1:19935021 chr1:19935005 . . 0 5 hm5C_associated_SNPs_2437 0 0 1 0 0 unknown 1 0.500231643920906 1 0.999536712158189 hm5C_site_5690 DeepMRMD:1;iRNA_m5C:0.999536712158189 5691 chr1 20880922 20880922 1 + G C rs564550449 20880917 + 20880897 20880937 41 CTTGTAGGAGAAGAATCTAGCGGCCGGGGAGAATTGGGGCC CTTGTAGGAGAAGAATCTAGCGGCCCGGGAGAATTGGGGCC < 41bp 1 0.569646093449814 1 0.77189439535141 experiment 0.860707813100372 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM43B ENSG00000183114 UTR3 Human protein_coding chr1:20880917 chr1:20880922 . . 0 26 hm5C_associated_SNPs_2439 0 0 0 0 0 exosome 1 0.500231643921092 0.45621120929718 0.999536712157815 hm5C_site_5691 DeepMRMD:0.45621120929718;iRNA_m5C:0.999536712157815 5692 chr1 21900171 21900171 1 + A G rs3200255 21900169 + 21900149 21900189 41 CCTCCTCAGGTCTCTTCGAGCCAGGGGACATGCAGTACGAG CCTCCTCAGGTCTCTTCGAGCCGGGGGACATGCAGTACGAG < 41bp 1 0.569397763140749 1 0.92684942483902 experiment 0.861204473718503 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALPL ENSG00000162551 CDS Human protein_coding chr1:21900169 chr1:21900171 synonymous SNV . 0 23 hm5C_associated_SNPs_2440 2 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 0.14630115032196 0.999536712157815 hm5C_site_5692 DeepMRMD:0.14630115032196;iRNA_m5C:0.999536712157815 not specified not specified 5693 chr1 22307553 22307553 1 + G A rs147301723 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGATGTTGGGCGAGTACGACCGTGCTGTGAA < 41bp 1 0.567209966042836 1 0.437266528606415 experiment 0.865580067914328 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307553 nonsynonymous SNV 0.089 2 13 hm5C_associated_SNPs_2441 0 0 0 0 1 unknown 1 0.500234265697424 1 0.999531468605152 hm5C_site_5693 DeepMRMD:1;iRNA_m5C:0.999531468605152 5694 chr1 22307553 22307553 1 + G A rs147301723 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGATGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG < 41bp 1 0.457732822434326 1 0.50342321395874 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307553 nonsynonymous SNV 0.089 2 7 hm5C_associated_SNPs_2442 0 0 0 0 1 unknown 1 0.500231643473403 0.99315357208252 0.999536713053194 hm5C_site_5694 DeepMRMD:0.99315357208252;iRNA_m5C:0.999536713053194 5695 chr1 22307553 22307553 1 + G A rs147301723 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGATGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC < 41bp 1 0.284140808165509 1 0.571966052055359 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307553 nonsynonymous SNV 0.089 2 4 hm5C_associated_SNPs_2443 0 0 0 0 1 unknown 1 0.500231646354055 0.856067895889282 0.999536707291889 hm5C_site_5695 DeepMRMD:0.856067895889282;iRNA_m5C:0.999536707291889 5696 chr1 22307582 22307582 1 + G A rs115521366 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAAGAGGG < 41bp 1 0.393979579238294 1 0.52284973859787 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307582 synonymous SNV . 0 36 hm5C_associated_SNPs_2444 0 0 0 0 2 unknown 1 0.500231567276904 0.95430052280426 0.999536865446193 hm5C_site_5696 DeepMRMD:0.95430052280426;iRNA_m5C:0.999536865446193 5697 chr1 22307582 22307582 1 + G A rs115521366 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAAGAGGGCCC < 41bp 1 0.298140432596728 1 0.693871974945068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307582 synonymous SNV . 0 33 hm5C_associated_SNPs_2445 0 0 0 0 2 unknown 1 0.500231643926063 0.612256050109864 0.999536712147875 hm5C_site_5697 DeepMRMD:0.612256050109864;iRNA_m5C:0.999536712147875 5698 chr1 22307582 22307582 1 + G A rs115521366 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACGACCGTGCTGTGAAAGAGGGCCCCGAGC < 41bp 1 0.558990075415636 1 0.150860786437988 experiment 0.882019849168728 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307582 synonymous SNV . 0 28 hm5C_associated_SNPs_2446 0 0 0 0 2 unknown 1 0.500231643916017 1 0.999536712167966 hm5C_site_5698 DeepMRMD:1;iRNA_m5C:0.999536712167966 5699 chr1 22307582 22307582 1 + G A rs115521366 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GACCGTGCTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.245943048260509 1 0.0691841840744019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307582 synonymous SNV . 0 15 hm5C_associated_SNPs_2447 0 0 0 0 2 unknown 1 0.500231643921189 1 0.999536712157622 hm5C_site_5699 DeepMRMD:1;iRNA_m5C:0.999536712157622 5700 chr1 22307582 22307582 1 + G A rs115521366 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCGTGCTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.505074963618888 1 0.223629474639893 experiment 0.989850072762224 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307582 synonymous SNV . 0 14 hm5C_associated_SNPs_2448 0 0 0 0 2 unknown 1 0.500231408341536 1 0.999537183316929 hm5C_site_5700 DeepMRMD:1;iRNA_m5C:0.999537183316929 5701 chr1 22307582 22307582 1 + G A rs115521366 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCGTGCTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.343235939030569 1 0.138304710388184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307582 synonymous SNV . 0 13 hm5C_associated_SNPs_2449 0 0 0 0 2 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_5701 DeepMRMD:1;iRNA_m5C:0.999536712157815 5702 chr1 22307582 22307582 1 + G A rs115521366 22307591 + 22307571 22307611 41 CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CGTGCTGTGAAAGAGGGCCCCGAGCAGGTGATCCCCATCAA < 41bp 1 0.540114260075492 1 0.242347300052643 experiment 0.919771479849015 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307591 chr1:22307582 synonymous SNV . 0 12 hm5C_associated_SNPs_2450 0 0 0 0 2 unknown 1 0.500231643346493 1 0.999536713307015 hm5C_site_5702 DeepMRMD:1;iRNA_m5C:0.999536713307015 5703 chr1 22329543 22329543 1 + C A rs7519660 22329556 + 22329536 22329576 41 CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT CGTTGTCAATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT < 41bp 1 0.22278028145206 1 0.338258266448975 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329556 chr1:22329543 nonsynonymous SNV 0.879 0 8 hm5C_associated_SNPs_2452 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_5703 DeepMRMD:1;iRNA_m5C:0.999536712157818 5704 chr1 22329543 22329543 1 + C A rs7519660 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCAATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA < 41bp 1 0.218505262587527 1 0.0862883031368256 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329543 nonsynonymous SNV 0.879 0 4 hm5C_associated_SNPs_2453 0 0 0 0 2 Endoplasmic reticulum 1 0.500230355438695 1 0.99953928912261 hm5C_site_5704 DeepMRMD:1;iRNA_m5C:0.99953928912261 5705 chr1 22329543 22329543 1 + C A rs7519660 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCAATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG < 41bp 1 0.234642922720969 1 0.156805604696274 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329543 nonsynonymous SNV 0.879 0 3 hm5C_associated_SNPs_2454 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921292 1 0.999536712157416 hm5C_site_5705 DeepMRMD:1;iRNA_m5C:0.999536712157416 5706 chr1 22329543 22329543 1 + C A rs7519660 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CAATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG < 41bp 1 0.0466519596542054 1 0.24813774228096 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329543 nonsynonymous SNV 0.879 0 2 hm5C_associated_SNPs_2455 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643931318 1 0.999536712137365 hm5C_site_5706 DeepMRMD:1;iRNA_m5C:0.999536712137365 5707 chr1 22331999 22331999 1 + C A rs60166197 22331980 + 22331960 22332000 41 AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATAG < 41bp 1 0.552166886456475 1 0.229766458272934 experiment 0.895666227087051 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331980 chr1:22331999 synonymous SNV . 0 40 hm5C_associated_SNPs_2457 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920583 1 0.999536712158834 hm5C_site_5707 DeepMRMD:1;iRNA_m5C:0.999536712158834 5708 chr1 22331999 22331999 1 + C A rs60166197 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACGTGTGGCGGTAGCCTCATAGCCCCCGATTGGGT < 41bp 1 0.354438818338449 1 0.0779540538787842 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22331999 synonymous SNV . 0 27 hm5C_associated_SNPs_2459 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643922307 1 0.999536712155385 hm5C_site_5708 DeepMRMD:1;iRNA_m5C:0.999536712155385 5709 chr1 22331999 22331999 1 + C A rs60166197 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACGTGTGGCGGTAGCCTCATAGCCCCCGATTGGGTT < 41bp 1 0.603567551078593 1 0.477241098880768 experiment 0.792864897842814 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22331999 synonymous SNV . 0 26 hm5C_associated_SNPs_2460 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157817 hm5C_site_5709 DeepMRMD:1;iRNA_m5C:0.999536712157817 5710 chr1 22331999 22331999 1 + C A rs60166197 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACGTGTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGT < 41bp 1 0.328155567950954 1 0.529062271118164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22331999 synonymous SNV . 0 24 hm5C_associated_SNPs_2461 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.941875457763672 0.999536712157816 hm5C_site_5710 DeepMRMD:0.941875457763672;iRNA_m5C:0.999536712157816 5711 chr1 22331999 22331999 1 + C A rs60166197 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG GTGTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTG < 41bp 1 0.431730448161564 1 0.270146071910858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22331999 synonymous SNV . 0 19 hm5C_associated_SNPs_2462 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_5711 DeepMRMD:1;iRNA_m5C:0.999536712157816 5712 chr1 22331999 22331999 1 + C A rs60166197 22332002 + 22331982 22332022 41 TGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGC TGTGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTGC < 41bp 1 0.676542727215977 1 0.83456015586853 experiment 0.646914545568045 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332002 chr1:22331999 synonymous SNV . 0 18 hm5C_associated_SNPs_2463 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643891684 0.33087968826294 0.999536712216633 hm5C_site_5712 DeepMRMD:0.33087968826294;iRNA_m5C:0.999536712216633 5713 chr1 22331999 22331999 1 + C A rs60166197 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTGCCG < 41bp 1 0.195866797095721 1 0.0484673678874969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22331999 synonymous SNV . 0 16 hm5C_associated_SNPs_2465 0 0 0 0 2 Endoplasmic reticulum 1 0.500231588020726 1 0.999536823958548 hm5C_site_5713 DeepMRMD:1;iRNA_m5C:0.999536823958548 5714 chr1 22331999 22331999 1 + C A rs60166197 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATAGCCCCCGATTGGGTTGTGACTGCCGG < 41bp 1 0.362954574080817 1 0.321710824966431 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22331999 synonymous SNV . 0 15 hm5C_associated_SNPs_2466 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921095 1 0.99953671215781 hm5C_site_5714 DeepMRMD:1;iRNA_m5C:0.99953671215781 5715 chr1 22331999 22331999 1 + C A rs60166197 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT AGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT < 41bp 1 0.652309828263341 1 0.28753250837326 experiment 0.695380343473318 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22331999 synonymous SNV . 0 1 hm5C_associated_SNPs_2467 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921095 1 0.999536712157811 hm5C_site_5715 DeepMRMD:1;iRNA_m5C:0.999536712157811 5716 chr1 22332177 22332177 1 + G C rs574373339 22332162 + 22332142 22332182 41 CCTCTGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTG CCTCTGCCTGCAGGAGGGATCTGACCTACCAGGTGCTGTTG < 41bp 1 0.595855622911669 1 0.294580399990082 experiment 0.808288754176661 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332162 chr1:22332177 nonsynonymous SNV 0.233 2 36 hm5C_associated_SNPs_2468 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5716 DeepMRMD:1;iRNA_m5C:0.999536712157815 5717 chr1 22332177 22332177 1 + G C rs574373339 22332166 + 22332146 22332186 41 TGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTG TGCCTGCAGGAGGGATCTGACCTACCAGGTGCTGTTGGGTG < 41bp 1 0.0677473078569367 1 0.194716960191727 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332166 chr1:22332177 nonsynonymous SNV 0.233 2 32 hm5C_associated_SNPs_2469 0 0 0 0 1 Endoplasmic reticulum 1 0.500231656508236 1 0.999536686983529 hm5C_site_5717 DeepMRMD:1;iRNA_m5C:0.999536686983529 5718 chr1 22332177 22332177 1 + G C rs574373339 22332167 + 22332147 22332187 41 GCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGA GCCTGCAGGAGGGATCTGACCTACCAGGTGCTGTTGGGTGA < 41bp 1 0.518677747791392 1 0.0807413458824158 experiment 0.962644504417216 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332167 chr1:22332177 nonsynonymous SNV 0.233 2 31 hm5C_associated_SNPs_2470 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164390895 1 0.9995367121821 hm5C_site_5718 DeepMRMD:1;iRNA_m5C:0.9995367121821 5719 chr1 22332177 22332177 1 + G C rs574373339 22332170 + 22332150 22332190 41 TGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGAGTA TGCAGGAGGGATCTGACCTACCAGGTGCTGTTGGGTGAGTA < 41bp 1 0.467933460652713 1 0.462318539619446 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332170 chr1:22332177 nonsynonymous SNV 0.233 2 28 hm5C_associated_SNPs_2471 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921089 1 0.999536712157822 hm5C_site_5719 DeepMRMD:1;iRNA_m5C:0.999536712157822 5720 chr1 22332177 22332177 1 + G C rs574373339 22332191 + 22332171 22332211 41 CAGGTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGG CAGGTGCTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGG < 41bp 1 0.377769436172376 1 0.368681341409683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332191 chr1:22332177 nonsynonymous SNV 0.233 2 7 hm5C_associated_SNPs_2472 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5720 DeepMRMD:1;iRNA_m5C:0.999536712157815 5721 chr1 22332177 22332177 1 + G C rs574373339 22332194 + 22332174 22332214 41 GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC GTGCTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC < 41bp 1 0.115885589973846 1 0.182609587907791 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332194 chr1:22332177 nonsynonymous SNV 0.233 2 4 hm5C_associated_SNPs_2473 0 0 0 0 1 Endoplasmic reticulum 1 0.500231737429172 1 0.999536525141655 hm5C_site_5721 DeepMRMD:1;iRNA_m5C:0.999536525141655 5722 chr1 22332177 22332177 1 + G C rs574373339 22332195 + 22332175 22332215 41 TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC TGCTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC < 41bp 1 0.558747548930869 1 0.127831101417542 experiment 0.882504902138261 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332195 chr1:22332177 nonsynonymous SNV 0.233 2 3 hm5C_associated_SNPs_2474 0 0 0 0 1 Endoplasmic reticulum 1 0.500231646597904 1 0.999536706804193 hm5C_site_5722 DeepMRMD:1;iRNA_m5C:0.999536706804193 5723 chr1 22332245 22332245 1 + G C rs74958230 22332227 + 22332207 22332247 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCT < 41bp 1 0.561022279365318 1 0.062059223651886 experiment 0.877955441269364 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332227 chr1:22332245 nonsynonymous SNV 0.001 0 39 hm5C_associated_SNPs_2475 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643919804 1 0.999536712160393 hm5C_site_5723 DeepMRMD:1;iRNA_m5C:0.999536712160393 5724 chr1 22332245 22332245 1 + G C rs74958230 22332228 + 22332208 22332248 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTG < 41bp 1 0.154540679194506 1 0.0247264802455902 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332228 chr1:22332245 nonsynonymous SNV 0.001 0 38 hm5C_associated_SNPs_2476 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643955243 1 0.999536712089513 hm5C_site_5724 DeepMRMD:1;iRNA_m5C:0.999536712089513 5725 chr1 22332245 22332245 1 + G C rs74958230 22332229 + 22332209 22332249 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTGT < 41bp 1 0.0797855840844246 1 0.0820827484130859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332229 chr1:22332245 nonsynonymous SNV 0.001 0 37 hm5C_associated_SNPs_2477 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643866955 1 0.999536712266089 hm5C_site_5725 DeepMRMD:1;iRNA_m5C:0.999536712266089 5726 chr1 22332245 22332245 1 + G C rs74958230 22332230 + 22332210 22332250 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTGTT < 41bp 1 0.473560417223752 1 0.199098140001297 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332230 chr1:22332245 nonsynonymous SNV 0.001 0 36 hm5C_associated_SNPs_2478 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157812 hm5C_site_5726 DeepMRMD:1;iRNA_m5C:0.999536712157812 5727 chr1 22332245 22332245 1 + G C rs74958230 22332233 + 22332213 22332253 41 CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT CCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTGTTTGT < 41bp 1 0.476493097214044 1 0.51927661895752 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332233 chr1:22332245 nonsynonymous SNV 0.001 0 33 hm5C_associated_SNPs_2479 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921067 0.96144676208496 0.999536712157867 hm5C_site_5727 DeepMRMD:0.96144676208496;iRNA_m5C:0.999536712157867 5728 chr1 22332245 22332245 1 + G C rs74958230 22332236 + 22332216 22332256 41 GAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGTGCA GAGCAGGTGATCCCCATCAACTCTGAGGACCTGTTTGTGCA < 41bp 1 0.595552384691918 1 0.524219870567322 experiment 0.808895230616165 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332236 chr1:22332245 nonsynonymous SNV 0.001 0 30 hm5C_associated_SNPs_2480 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644592045 0.951560258865356 0.999536710815911 hm5C_site_5728 DeepMRMD:0.951560258865356;iRNA_m5C:0.999536710815911 5729 chr1 22332245 22332245 1 + G C rs74958230 22332246 + 22332226 22332266 41 TCCCCATCAACTCTGAGGAGCTGTTTGTGCATCCACTCTGG TCCCCATCAACTCTGAGGACCTGTTTGTGCATCCACTCTGG < 41bp 1 0.23617209739913 1 0.0921772420406342 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332246 chr1:22332245 nonsynonymous SNV 0.001 0 20 hm5C_associated_SNPs_2481 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392106 1 0.99953671215788 hm5C_site_5729 DeepMRMD:1;iRNA_m5C:0.99953671215788 5730 chr1 22332245 22332245 1 + G C rs74958230 22332255 + 22332235 22332275 41 ACTCTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGAGGACCTGTTTGTGCATCCACTCTGGAACCGCTCG < 41bp 1 0.219959030512251 1 0.37625190615654 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332255 chr1:22332245 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_2482 0 0 0 0 2 Endoplasmic reticulum 1 0.500231648216195 1 0.999536703567609 hm5C_site_5730 DeepMRMD:1;iRNA_m5C:0.999536703567609 5731 chr1 22332245 22332245 1 + G C rs74958230 22332258 + 22332238 22332278 41 CTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGAGGACCTGTTTGTGCATCCACTCTGGAACCGCTCGTGT < 41bp 1 0.213282214491025 1 0.0876748561859131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332258 chr1:22332245 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_2483 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921252 1 0.999536712157496 hm5C_site_5731 DeepMRMD:1;iRNA_m5C:0.999536712157496 5732 chr1 22332245 22332245 1 + G C rs74958230 22332259 + 22332239 22332279 41 TGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGAGGACCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTG < 41bp 1 0.31485349441546 1 0.0633180141448975 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332259 chr1:22332245 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_2484 0 0 0 0 2 Endoplasmic reticulum 1 0.500231614108109 1 0.999536771783782 hm5C_site_5732 DeepMRMD:1;iRNA_m5C:0.999536771783782 5733 chr1 22332245 22332245 1 + G C rs74958230 22332261 + 22332241 22332281 41 AGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG AGGACCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG < 41bp 1 0.549258461761486 1 0.0956879556179047 experiment 0.901483076477028 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332261 chr1:22332245 nonsynonymous SNV 0.001 0 5 hm5C_associated_SNPs_2485 0 0 0 0 2 Endoplasmic reticulum 1 0.500231352238761 1 0.999537295522478 hm5C_site_5733 DeepMRMD:1;iRNA_m5C:0.999537295522478 5734 chr1 22333405 22333405 1 + G A rs368803904 22333386 + 22333366 22333406 41 CCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGC CCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCAC < 41bp 1 0.559861012310781 1 0.187176942825317 experiment 0.880277975378438 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333386 chr1:22333405 nonsynonymous SNV 0.693 3 40 hm5C_associated_SNPs_2486 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643939847 1 0.999536712120306 hm5C_site_5734 DeepMRMD:1;iRNA_m5C:0.999536712120306 5735 chr1 22333405 22333405 1 + G A rs368803904 22333389 + 22333369 22333409 41 AGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCA AGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCACCCA < 41bp 1 0.56450597477286 1 0.803005635738373 experiment 0.870988050454279 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333389 chr1:22333405 nonsynonymous SNV 0.693 3 37 hm5C_associated_SNPs_2487 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643952093 0.393988728523254 0.999536712095815 hm5C_site_5735 DeepMRMD:0.393988728523254;iRNA_m5C:0.999536712095815 5736 chr1 22333405 22333405 1 + G A rs368803904 22333393 + 22333373 22333413 41 ATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTG ATGACATCGCCCTCATCAAGCTCTCACGCAGCACCCAGCTG < 41bp 1 0.224194165488938 1 0.042635053396225 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333393 chr1:22333405 nonsynonymous SNV 0.693 3 33 hm5C_associated_SNPs_2488 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644513857 1 0.999536710972287 hm5C_site_5736 DeepMRMD:1;iRNA_m5C:0.999536710972287 5737 chr1 22333405 22333405 1 + G A rs368803904 22333395 + 22333375 22333415 41 GACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGG GACATCGCCCTCATCAAGCTCTCACGCAGCACCCAGCTGGG < 41bp 1 0.276257575475427 1 0.140881508588791 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333395 chr1:22333405 nonsynonymous SNV 0.693 3 31 hm5C_associated_SNPs_2489 0 0 0 0 1 Endoplasmic reticulum 1 0.500094889423088 1 0.999810221153824 hm5C_site_5737 DeepMRMD:1;iRNA_m5C:0.999810221153824 5738 chr1 22333405 22333405 1 + G A rs368803904 22333397 + 22333377 22333417 41 CATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAG CATCGCCCTCATCAAGCTCTCACGCAGCACCCAGCTGGGAG < 41bp 1 0.572411567154639 1 0.225986123085022 experiment 0.855176865690723 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333397 chr1:22333405 nonsynonymous SNV 0.693 3 29 hm5C_associated_SNPs_2490 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643312812 1 0.999536713374376 hm5C_site_5738 DeepMRMD:1;iRNA_m5C:0.999536713374376 5739 chr1 22333405 22333405 1 + G A rs368803904 22333399 + 22333379 22333419 41 TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT TCGCCCTCATCAAGCTCTCACGCAGCACCCAGCTGGGAGAT < 41bp 1 0.592942519788146 1 0.214538037776947 experiment 0.814114960423708 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333399 chr1:22333405 nonsynonymous SNV 0.693 3 27 hm5C_associated_SNPs_2491 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920504 1 0.999536712158991 hm5C_site_5739 DeepMRMD:1;iRNA_m5C:0.999536712158991 5740 chr1 22333405 22333405 1 + G A rs368803904 22333404 + 22333384 22333424 41 CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT CTCATCAAGCTCTCACGCAGCACCCAGCTGGGAGATGCCGT < 41bp 1 0.230644859132347 1 0.101385563611984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333404 chr1:22333405 nonsynonymous SNV 0.693 3 22 hm5C_associated_SNPs_2492 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643909509 1 0.999536712180982 hm5C_site_5740 DeepMRMD:1;iRNA_m5C:0.999536712180982 5741 chr1 22333405 22333405 1 + G A rs368803904 22333406 + 22333386 22333426 41 CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC CATCAAGCTCTCACGCAGCACCCAGCTGGGAGATGCCGTCC < 41bp 1 0.377218076449307 1 0.0719006955623627 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333406 chr1:22333405 nonsynonymous SNV 0.693 3 20 hm5C_associated_SNPs_2493 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644246647 1 0.999536711506706 hm5C_site_5741 DeepMRMD:1;iRNA_m5C:0.999536711506706 5742 chr1 22333405 22333405 1 + G A rs368803904 22333407 + 22333387 22333427 41 ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCA ATCAAGCTCTCACGCAGCACCCAGCTGGGAGATGCCGTCCA < 41bp 1 0.324730093503149 1 0.280444324016571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333407 chr1:22333405 nonsynonymous SNV 0.693 3 19 hm5C_associated_SNPs_2494 0 0 0 0 1 Endoplasmic reticulum 1 0.500253110512707 1 0.999493778974586 hm5C_site_5742 DeepMRMD:1;iRNA_m5C:0.999493778974586 5743 chr1 22333405 22333405 1 + G A rs368803904 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCACCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC < 41bp 1 0.101948586897986 1 0.165355205535889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333405 nonsynonymous SNV 0.693 3 5 hm5C_associated_SNPs_2496 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921095 1 0.99953671215781 hm5C_site_5743 DeepMRMD:1;iRNA_m5C:0.99953671215781 5744 chr1 22333405 22333405 1 + G A rs368803904 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCACCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC < 41bp 1 0.330465770451684 1 0.538744330406189 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333405 nonsynonymous SNV 0.693 3 4 hm5C_associated_SNPs_2497 0 0 0 0 1 Endoplasmic reticulum 1 0.50023140551817 0.922511339187622 0.99953718896366 hm5C_site_5744 DeepMRMD:0.922511339187622;iRNA_m5C:0.99953718896366 5745 chr1 22333405 22333405 1 + G A rs368803904 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC ACCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC < 41bp 1 0.372671576878993 1 0.545641303062439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333405 nonsynonymous SNV 0.693 3 1 hm5C_associated_SNPs_2498 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.908717393875122 0.999536712157815 hm5C_site_5745 DeepMRMD:0.908717393875122;iRNA_m5C:0.999536712157815 5746 chr1 22333419 22333419 1 + T C rs138658162 22333399 + 22333379 22333419 41 TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAC < 41bp 1 0.639949465710334 1 0.216540575027466 experiment 0.720101068579332 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333399 chr1:22333419 synonymous SNV . 0 41 hm5C_associated_SNPs_2499 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392372 1 0.99953671215256 hm5C_site_5746 DeepMRMD:1;iRNA_m5C:0.99953671215256 5747 chr1 22333419 22333419 1 + T C rs138658162 22333404 + 22333384 22333424 41 CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGT < 41bp 1 0.324846927454546 1 0.237816244363785 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333404 chr1:22333419 synonymous SNV . 0 36 hm5C_associated_SNPs_2501 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643922181 1 0.999536712155638 hm5C_site_5747 DeepMRMD:1;iRNA_m5C:0.999536712155638 5748 chr1 22333419 22333419 1 + T C rs138658162 22333406 + 22333386 22333426 41 CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGTCC < 41bp 1 0.358960005362984 1 0.0776342451572418 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333406 chr1:22333419 synonymous SNV . 0 34 hm5C_associated_SNPs_2502 0 0 0 0 2 Endoplasmic reticulum 1 0.500231642650855 1 0.999536714698291 hm5C_site_5748 DeepMRMD:1;iRNA_m5C:0.999536714698291 5749 chr1 22333419 22333419 1 + T C rs138658162 22333407 + 22333387 22333427 41 ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCA ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGTCCA < 41bp 1 0.26805674301935 1 0.141392201185226 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333407 chr1:22333419 synonymous SNV . 0 33 hm5C_associated_SNPs_2503 0 0 0 0 2 Endoplasmic reticulum 1 0.500242215943305 1 0.999515568113391 hm5C_site_5749 DeepMRMD:1;iRNA_m5C:0.999515568113391 5750 chr1 22333419 22333419 1 + T C rs138658162 22333408 + 22333388 22333428 41 TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCAG TCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGTCCAG < 41bp 1 0.661533444668957 1 0.420954376459122 experiment 0.676933110662085 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333408 chr1:22333419 synonymous SNV . 0 32 hm5C_associated_SNPs_2504 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921478 1 0.999536712157045 hm5C_site_5750 DeepMRMD:1;iRNA_m5C:0.999536712157045 5751 chr1 22333419 22333419 1 + T C rs138658162 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCC < 41bp 1 0.108201541049825 1 0.133911848068237 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333419 synonymous SNV . 0 19 hm5C_associated_SNPs_2505 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392106 1 0.99953671215788 hm5C_site_5751 DeepMRMD:1;iRNA_m5C:0.99953671215788 5752 chr1 22333419 22333419 1 + T C rs138658162 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCC < 41bp 1 0.258858994813693 1 0.263603895902634 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333419 synonymous SNV . 0 18 hm5C_associated_SNPs_2506 0 0 0 0 2 Endoplasmic reticulum 1 0.500231633247912 1 0.999536733504175 hm5C_site_5752 DeepMRMD:1;iRNA_m5C:0.999536733504175 5753 chr1 22333419 22333419 1 + T C rs138658162 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCC < 41bp 1 0.403138492357059 1 0.74055689573288 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333419 synonymous SNV . 0 15 hm5C_associated_SNPs_2507 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643926154 0.51888620853424 0.999536712147691 hm5C_site_5753 DeepMRMD:0.51888620853424;iRNA_m5C:0.999536712147691 5754 chr1 22333419 22333419 1 + T C rs138658162 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCC < 41bp 1 0.565794494083443 1 0.709638297557831 experiment 0.868411011833114 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333419 synonymous SNV . 0 14 hm5C_associated_SNPs_2508 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643875753 0.580723404884338 0.999536712248494 hm5C_site_5754 DeepMRMD:0.580723404884338;iRNA_m5C:0.999536712248494 5755 chr1 22333419 22333419 1 + T C rs138658162 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCT < 41bp 1 0.624491099575359 1 0.535141348838806 experiment 0.751017800849283 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333419 synonymous SNV . 0 11 hm5C_associated_SNPs_2509 0 0 0 0 2 Endoplasmic reticulum 1 0.500231640454342 0.929717302322388 0.999536719091316 hm5C_site_5755 DeepMRMD:0.929717302322388;iRNA_m5C:0.999536719091316 5756 chr1 22333419 22333419 1 + T C rs138658162 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG < 41bp 1 0.280315258528876 1 0.164990186691284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333419 synonymous SNV . 0 7 hm5C_associated_SNPs_2511 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5756 DeepMRMD:1;iRNA_m5C:0.999536712157815 5757 chr1 22333419 22333419 1 + T C rs138658162 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.205889722092026 1 0.172382175922394 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333419 synonymous SNV . 0 6 hm5C_associated_SNPs_2512 0 0 0 0 2 Endoplasmic reticulum 1 0.500232226353501 1 0.999535547292997 hm5C_site_5757 DeepMRMD:1;iRNA_m5C:0.999535547292997 5758 chr1 22333419 22333419 1 + T C rs138658162 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.118026807641804 1 0.157663702964783 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333419 synonymous SNV . 0 4 hm5C_associated_SNPs_2513 0 0 0 0 2 Endoplasmic reticulum 1 0.500244089068225 1 0.99951182186355 hm5C_site_5758 DeepMRMD:1;iRNA_m5C:0.99951182186355 5759 chr1 22333419 22333419 1 + T C rs138658162 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ACGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.366416467716153 1 0.115856021642685 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333419 synonymous SNV . 0 2 hm5C_associated_SNPs_2514 0 0 0 0 2 Endoplasmic reticulum 1 0.500230984464352 1 0.999538031071296 hm5C_site_5759 DeepMRMD:1;iRNA_m5C:0.999538031071296 5760 chr1 22333431 22333431 1 + C T rs149331601 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCGTCCAGCTTGCCTCACTCC < 41bp 1 0.0854651395716098 1 0.0705235600471497 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333431 synonymous SNV . 0 31 hm5C_associated_SNPs_2515 0 0 0 0 2 Endoplasmic reticulum 1 0.500231645373093 1 0.999536709253815 hm5C_site_5760 DeepMRMD:1;iRNA_m5C:0.999536709253815 5761 chr1 22333431 22333431 1 + C T rs149331601 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCGTCCAGCTTGCCTCACTCCC < 41bp 1 0.298629994535729 1 0.360298305749893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333431 synonymous SNV . 0 30 hm5C_associated_SNPs_2516 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643158136 1 0.999536713683729 hm5C_site_5761 DeepMRMD:1;iRNA_m5C:0.999536713683729 5762 chr1 22333431 22333431 1 + C T rs149331601 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCGTCCAGCTTGCCTCACTCCCTCC < 41bp 1 0.468214315936015 1 0.412542104721069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333431 synonymous SNV . 0 27 hm5C_associated_SNPs_2517 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921699 1 0.999536712156603 hm5C_site_5762 DeepMRMD:1;iRNA_m5C:0.999536712156603 5763 chr1 22333431 22333431 1 + C T rs149331601 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCGTCCAGCTTGCCTCACTCCCTCCC < 41bp 1 0.625828146029234 1 0.50378829240799 experiment 0.748343707941531 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333431 synonymous SNV . 0 26 hm5C_associated_SNPs_2518 0 0 0 0 2 Endoplasmic reticulum 1 0.500231642035652 0.99242341518402 0.999536715928696 hm5C_site_5763 DeepMRMD:0.99242341518402;iRNA_m5C:0.999536715928696 5764 chr1 22333431 22333431 1 + C T rs149331601 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCT < 41bp 1 0.356726908426105 1 0.245185106992722 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333431 synonymous SNV . 0 23 hm5C_associated_SNPs_2519 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5764 DeepMRMD:1;iRNA_m5C:0.999536712157815 5765 chr1 22333431 22333431 1 + C T rs149331601 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTG < 41bp 1 0.263245456305846 1 0.0799324214458466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333431 synonymous SNV . 0 19 hm5C_associated_SNPs_2520 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5765 DeepMRMD:1;iRNA_m5C:0.999536712157815 5766 chr1 22333431 22333431 1 + C T rs149331601 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.285862618235574 1 0.105623543262482 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333431 synonymous SNV . 0 18 hm5C_associated_SNPs_2521 0 0 0 0 2 Endoplasmic reticulum 1 0.500232505257069 1 0.999534989485863 hm5C_site_5766 DeepMRMD:1;iRNA_m5C:0.999534989485863 5767 chr1 22333431 22333431 1 + C T rs149331601 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.132555480063819 1 0.204719543457031 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333431 synonymous SNV . 0 16 hm5C_associated_SNPs_2522 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164380965 1 0.999536712380701 hm5C_site_5767 DeepMRMD:1;iRNA_m5C:0.999536712380701 5768 chr1 22333431 22333431 1 + C T rs149331601 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.333038241306405 1 0.124752819538116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333431 synonymous SNV . 0 14 hm5C_associated_SNPs_2523 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643359156 1 0.999536713281687 hm5C_site_5768 DeepMRMD:1;iRNA_m5C:0.999536713281687 5769 chr1 22333431 22333431 1 + C T rs149331601 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0894525407307336 1 0.0637261569499969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333431 synonymous SNV . 0 12 hm5C_associated_SNPs_2524 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643929542 1 0.999536712140915 hm5C_site_5769 DeepMRMD:1;iRNA_m5C:0.999536712140915 5770 chr1 22333431 22333431 1 + C T rs149331601 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTT < 41bp 1 0.0544741650395902 1 0.0282707214355469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333431 synonymous SNV . 0 11 hm5C_associated_SNPs_2525 0 0 0 0 2 Endoplasmic reticulum 1 0.500231627659421 1 0.999536744681159 hm5C_site_5770 DeepMRMD:1;iRNA_m5C:0.999536744681159 5771 chr1 22333431 22333431 1 + C T rs149331601 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTTC < 41bp 1 0.422477432551725 1 0.333011269569397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333431 synonymous SNV . 0 10 hm5C_associated_SNPs_2526 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920763 1 0.999536712158475 hm5C_site_5771 DeepMRMD:1;iRNA_m5C:0.999536712158475 5772 chr1 22333431 22333431 1 + C T rs149331601 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC < 41bp 1 0.385141230756287 1 0.249746352434158 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333431 synonymous SNV . 0 8 hm5C_associated_SNPs_2527 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5772 DeepMRMD:1;iRNA_m5C:0.999536712157815 5773 chr1 22333431 22333431 1 + C T rs149331601 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA < 41bp 1 0.292788351931317 1 0.262066870927811 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333431 synonymous SNV . 0 7 hm5C_associated_SNPs_2528 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921164 1 0.999536712157672 hm5C_site_5773 DeepMRMD:1;iRNA_m5C:0.999536712157672 5774 chr1 22333431 22333431 1 + C T rs149331601 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTTGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA < 41bp 1 0.666210711472543 1 0.844981968402863 experiment 0.667578577054914 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333431 synonymous SNV . 0 6 hm5C_associated_SNPs_2529 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.310036063194274 0.999536712157815 hm5C_site_5774 DeepMRMD:0.310036063194274;iRNA_m5C:0.999536712157815 5775 chr1 22333954 22333954 1 + C T rs74062237 22333953 + 22333933 22333973 41 CAGGTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGG CAGGTGGAACTGGTGGGGTTCTACCGTGAAGAAAACCATGG < 41bp 1 0.352388228526957 1 0.27826252579689 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333953 chr1:22333954 synonymous SNV . 0 22 hm5C_associated_SNPs_2530 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5775 DeepMRMD:1;iRNA_m5C:0.999536712157815 5776 chr1 22333954 22333954 1 + C T rs74062237 22333956 + 22333936 22333976 41 GTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGGTGT GTGGAACTGGTGGGGTTCTACCGTGAAGAAAACCATGGTGT < 41bp 1 0.484654012612817 1 0.567953586578369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333956 chr1:22333954 synonymous SNV . 0 19 hm5C_associated_SNPs_2531 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643901903 0.864092826843262 0.999536712196194 hm5C_site_5776 DeepMRMD:0.864092826843262;iRNA_m5C:0.999536712196194 5777 chr1 22333954 22333954 1 + C T rs74062237 22333968 + 22333948 22333988 41 GGGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT GGGTTCTACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT < 41bp 1 0.195144750916502 1 0.309193313121796 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333968 chr1:22333954 synonymous SNV . 0 7 hm5C_associated_SNPs_2532 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644176596 1 0.999536711646808 hm5C_site_5777 DeepMRMD:1;iRNA_m5C:0.999536711646808 5778 chr1 22333954 22333954 1 + C T rs74062237 22333969 + 22333949 22333989 41 GGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA GGTTCTACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA < 41bp 1 0.642683905951462 1 0.319608509540558 experiment 0.714632188097076 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333969 chr1:22333954 synonymous SNV . 0 6 hm5C_associated_SNPs_2533 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5778 DeepMRMD:1;iRNA_m5C:0.999536712157815 5779 chr1 22333988 22333988 1 + T C rs112024506 22333968 + 22333948 22333988 41 GGGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT GGGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGC < 41bp 1 0.237118387666978 1 0.29985111951828 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333968 chr1:22333988 nonsynonymous SNV 0.010 1 41 hm5C_associated_SNPs_2534 0 0 0 0 1 Endoplasmic reticulum 1 0.500233258979963 1 0.999533482040074 hm5C_site_5779 DeepMRMD:1;iRNA_m5C:0.999533482040074 5780 chr1 22333988 22333988 1 + T C rs112024506 22333969 + 22333949 22333989 41 GGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA GGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGCA < 41bp 1 0.609026671855447 1 0.333114892244339 experiment 0.781946656289106 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333969 chr1:22333988 nonsynonymous SNV 0.010 1 40 hm5C_associated_SNPs_2535 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921079 1 0.999536712157842 hm5C_site_5780 DeepMRMD:1;iRNA_m5C:0.999536712157842 5781 chr1 22333988 22333988 1 + T C rs112024506 22333990 + 22333970 22334010 41 ATGGTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGT ATGGTGTGTGCTGGAGGGCACATCCGCTCCGGCTGCAACGT < 41bp 1 0.217200953344819 1 0.0748099684715271 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333990 chr1:22333988 nonsynonymous SNV 0.010 1 19 hm5C_associated_SNPs_2536 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643922626 1 0.999536712154749 hm5C_site_5781 DeepMRMD:1;iRNA_m5C:0.999536712154749 5782 chr1 22333988 22333988 1 + T C rs112024506 22333993 + 22333973 22334013 41 GTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAG GTGTGTGCTGGAGGGCACATCCGCTCCGGCTGCAACGTGAG < 41bp 1 0.399953363035718 1 0.189060270786285 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333993 chr1:22333988 nonsynonymous SNV 0.010 1 16 hm5C_associated_SNPs_2537 0 0 0 0 1 Endoplasmic reticulum 1 0.500233851294564 1 0.999532297410873 hm5C_site_5782 DeepMRMD:1;iRNA_m5C:0.999532297410873 5783 chr1 22333988 22333988 1 + T C rs112024506 22333994 + 22333974 22334014 41 TGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGT TGTGTGCTGGAGGGCACATCCGCTCCGGCTGCAACGTGAGT < 41bp 1 0.31476204921958 1 0.475503265857697 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333994 chr1:22333988 nonsynonymous SNV 0.010 1 15 hm5C_associated_SNPs_2538 0 0 0 0 1 Endoplasmic reticulum 1 0.500231647838855 1 0.99953670432229 hm5C_site_5783 DeepMRMD:1;iRNA_m5C:0.99953670432229 5784 chr1 22333988 22333988 1 + T C rs112024506 22333998 + 22333978 22334018 41 TGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGC TGCTGGAGGGCACATCCGCTCCGGCTGCAACGTGAGTCAGC < 41bp 1 0.407264900821319 1 0.433722317218781 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333998 chr1:22333988 nonsynonymous SNV 0.010 1 11 hm5C_associated_SNPs_2539 0 0 0 0 1 Endoplasmic reticulum 1 0.500081231232895 1 0.999837537534209 hm5C_site_5784 DeepMRMD:1;iRNA_m5C:0.999837537534209 5785 chr1 22333988 22333988 1 + T C rs112024506 22333999 + 22333979 22334019 41 GCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCT GCTGGAGGGCACATCCGCTCCGGCTGCAACGTGAGTCAGCT < 41bp 1 0.503014825783075 1 0.312023371458054 experiment 0.99397034843385 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333999 chr1:22333988 nonsynonymous SNV 0.010 1 10 hm5C_associated_SNPs_2540 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921031 1 0.999536712157937 hm5C_site_5785 DeepMRMD:1;iRNA_m5C:0.999536712157937 5786 chr1 22333988 22333988 1 + T C rs112024506 22334002 + 22333982 22334022 41 GGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTT GGAGGGCACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTT < 41bp 1 0.693087727479435 1 0.297299236059189 experiment 0.61382454504113 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334002 chr1:22333988 nonsynonymous SNV 0.010 1 7 hm5C_associated_SNPs_2541 0 0 0 0 1 Endoplasmic reticulum 1 0.500230493071553 1 0.999539013856894 hm5C_site_5786 DeepMRMD:1;iRNA_m5C:0.999539013856894 5787 chr1 22333988 22333988 1 + T C rs112024506 22334005 + 22333985 22334025 41 GGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTTACC GGGCACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTTACC < 41bp 1 0.51666476563458 1 0.253784865140915 experiment 0.966670468730841 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334005 chr1:22333988 nonsynonymous SNV 0.010 1 4 hm5C_associated_SNPs_2542 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921116 1 0.999536712157768 hm5C_site_5787 DeepMRMD:1;iRNA_m5C:0.999536712157768 5788 chr1 22336277 22336277 1 + C G rs3820285 22336262 + 22336242 22336282 41 CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGGCTTTG < 41bp 1 0.276471422930596 1 0.112695962190628 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336262 chr1:22336277 nonsynonymous SNV 0.001 0 36 hm5C_associated_SNPs_2543 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644861993 1 0.999536710276014 hm5C_site_5788 DeepMRMD:1;iRNA_m5C:0.999536710276014 5789 chr1 22336277 22336277 1 + C G rs3820285 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGGCTTTGG < 41bp 1 0.610339279942977 1 0.190015941858292 experiment 0.779321440114046 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336277 nonsynonymous SNV 0.001 0 35 hm5C_associated_SNPs_2544 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157817 hm5C_site_5789 DeepMRMD:1;iRNA_m5C:0.999536712157817 5790 chr1 22336277 22336277 1 + C G rs3820285 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCACGGTGTGACCAGCTTTGTTTCTGGCTTTGGCTG < 41bp 1 0.150353314785296 1 0.13359597325325 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336277 nonsynonymous SNV 0.001 0 32 hm5C_associated_SNPs_2545 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643925607 1 0.999536712148786 hm5C_site_5790 DeepMRMD:1;iRNA_m5C:0.999536712148786 5791 chr1 22336277 22336277 1 + C G rs3820285 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGACCAGCTTTGTTTCTGGCTTTGGCTGCAACTTCATCTG < 41bp 1 0.302802174175912 1 0.0585439205169678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336277 nonsynonymous SNV 0.001 0 20 hm5C_associated_SNPs_2547 0 0 0 0 1 Endoplasmic reticulum 1 0.500231626473881 1 0.999536747052238 hm5C_site_5791 DeepMRMD:1;iRNA_m5C:0.999536747052238 5792 chr1 22336277 22336277 1 + C G rs3820285 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGGCTTTGGCTGCAACTTCATCTGGAAGCCCAC < 41bp 1 0.243801063684443 1 0.0644423365592957 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336277 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_2548 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642191501 1 0.999536715616999 hm5C_site_5792 DeepMRMD:1;iRNA_m5C:0.999536715616999 5793 chr1 22336277 22336277 1 + C G rs3820285 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGGCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT < 41bp 1 0.644512053793235 1 0.865264296531677 experiment 0.710975892413531 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336277 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_2549 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.269471406936646 0.999536712157815 hm5C_site_5793 DeepMRMD:0.269471406936646;iRNA_m5C:0.999536712157815 5794 chr1 22336277 22336277 1 + C G rs3820285 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGGCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT < 41bp 1 0.349062983987309 1 0.540176331996918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336277 nonsynonymous SNV 0.001 0 5 hm5C_associated_SNPs_2550 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644027179 0.919647336006164 0.999536711945642 hm5C_site_5794 DeepMRMD:0.919647336006164;iRNA_m5C:0.999536711945642 5795 chr1 22336305 22336305 1 + C T rs9187 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCTAC < 41bp 1 0.196817667234405 1 0.083793431520462 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336305 synonymous SNV . 0 39 hm5C_associated_SNPs_2551 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921108 1 0.999536712157784 hm5C_site_5795 DeepMRMD:1;iRNA_m5C:0.999536712157784 5796 chr1 22336305 22336305 1 + C T rs9187 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCTACGGT < 41bp 1 0.528818698609287 1 0.712820172309875 experiment 0.942362602781426 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336305 synonymous SNV . 0 36 hm5C_associated_SNPs_2552 0 0 0 0 1 Endoplasmic reticulum 1 0.500231649817902 0.57435965538025 0.999536700364195 hm5C_site_5796 DeepMRMD:0.57435965538025;iRNA_m5C:0.999536700364195 5797 chr1 22336305 22336305 1 + C T rs9187 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCTACGGTGTT < 41bp 1 0.310952819955895 1 0.295841813087463 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336305 synonymous SNV . 0 33 hm5C_associated_SNPs_2553 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5797 DeepMRMD:1;iRNA_m5C:0.999536712157815 5798 chr1 22336305 22336305 1 + C T rs9187 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCATCTGGAAGCCTACGGTGTTCACTCGAGTC < 41bp 1 0.0741399035579947 1 0.179638296365738 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336305 synonymous SNV . 0 23 hm5C_associated_SNPs_2554 0 0 0 0 1 Endoplasmic reticulum 1 0.500231622418318 1 0.999536755163365 hm5C_site_5798 DeepMRMD:1;iRNA_m5C:0.999536755163365 5799 chr1 22336305 22336305 1 + C T rs9187 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCATCTGGAAGCCTACGGTGTTCACTCGAGTCT < 41bp 1 0.572905283952136 1 0.244585067033768 experiment 0.854189432095728 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336305 synonymous SNV . 0 22 hm5C_associated_SNPs_2555 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644842083 1 0.999536710315834 hm5C_site_5799 DeepMRMD:1;iRNA_m5C:0.999536710315834 5800 chr1 22336305 22336305 1 + C T rs9187 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCTACGGTGTTCACTCGAGTCTCCG < 41bp 1 0.420996887698399 1 0.266249895095825 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336305 synonymous SNV . 0 19 hm5C_associated_SNPs_2556 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392109 1 0.99953671215782 hm5C_site_5800 DeepMRMD:1;iRNA_m5C:0.99953671215782 5801 chr1 22336305 22336305 1 + C T rs9187 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCTACGGTGTTCACTCGAGTCTCCGCCTTCAT < 41bp 1 0.326647568372168 1 0.0207001864910126 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336305 synonymous SNV . 0 12 hm5C_associated_SNPs_2557 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643967946 1 0.999536712064109 hm5C_site_5801 DeepMRMD:1;iRNA_m5C:0.999536712064109 5802 chr1 22336305 22336305 1 + C T rs9187 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCTACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT < 41bp 1 0.657922312514236 1 0.190092116594315 experiment 0.684155374971527 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336305 synonymous SNV . 0 3 hm5C_associated_SNPs_2559 0 0 0 0 1 Endoplasmic reticulum 1 0.500231234146739 1 0.999537531706521 hm5C_site_5802 DeepMRMD:1;iRNA_m5C:0.999537531706521 5803 chr1 22336308 22336308 1 + G A rs12908 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACAGT < 41bp 1 0.555479453266782 1 0.757088661193848 experiment 0.889041093466436 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336308 synonymous SNV . 0 39 hm5C_associated_SNPs_2560 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644178315 0.485822677612304 0.999536711643369 hm5C_site_5803 DeepMRMD:0.485822677612304;iRNA_m5C:0.999536711643369 5804 chr1 22336308 22336308 1 + G A rs12908 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACAGTGTT < 41bp 1 0.291980471343858 1 0.391367435455322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336308 synonymous SNV . 0 36 hm5C_associated_SNPs_2561 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5804 DeepMRMD:1;iRNA_m5C:0.999536712157815 5805 chr1 22336308 22336308 1 + G A rs12908 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCATCTGGAAGCCCACAGTGTTCACTCGAGTC < 41bp 1 0.140969624027406 1 0.151550829410553 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336308 synonymous SNV . 0 26 hm5C_associated_SNPs_2562 0 0 0 0 1 Endoplasmic reticulum 1 0.500231992840765 1 0.99953601431847 hm5C_site_5805 DeepMRMD:1;iRNA_m5C:0.99953601431847 5806 chr1 22336308 22336308 1 + G A rs12908 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCATCTGGAAGCCCACAGTGTTCACTCGAGTCT < 41bp 1 0.457091087056085 1 0.172945737838745 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336308 synonymous SNV . 0 25 hm5C_associated_SNPs_2563 0 0 0 0 1 Endoplasmic reticulum 1 0.500231660598128 1 0.999536678803744 hm5C_site_5806 DeepMRMD:1;iRNA_m5C:0.999536678803744 5807 chr1 22336308 22336308 1 + G A rs12908 22336305 + 22336285 22336325 41 TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTC TGCAACTTCATCTGGAAGCCCACAGTGTTCACTCGAGTCTC < 41bp 1 0.56180164220317 1 0.115579009056091 experiment 0.87639671559366 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336305 chr1:22336308 synonymous SNV . 0 24 hm5C_associated_SNPs_2564 0 0 0 0 1 Endoplasmic reticulum 1 0.500231645301361 1 0.999536709397277 hm5C_site_5807 DeepMRMD:1;iRNA_m5C:0.999536709397277 5808 chr1 22336308 22336308 1 + G A rs12908 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCCACAGTGTTCACTCGAGTCTCCG < 41bp 1 0.374711507416639 1 0.187744170427322 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336308 synonymous SNV . 0 22 hm5C_associated_SNPs_2565 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643861499 1 0.999536712277002 hm5C_site_5808 DeepMRMD:1;iRNA_m5C:0.999536712277002 5809 chr1 22336308 22336308 1 + G A rs12908 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCCACAGTGTTCACTCGAGTCTCCGCCTTCAT < 41bp 1 0.3673513011008 1 0.00991225242614746 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336308 synonymous SNV . 0 15 hm5C_associated_SNPs_2566 0 0 0 0 1 Endoplasmic reticulum 1 0.500213097114799 1 0.999573805770402 hm5C_site_5809 DeepMRMD:1;iRNA_m5C:0.999573805770402 5810 chr1 22336308 22336308 1 + G A rs12908 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACAGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT < 41bp 1 0.624091128244105 1 0.196861177682877 experiment 0.751817743511791 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336308 synonymous SNV . 0 6 hm5C_associated_SNPs_2568 0 0 0 0 1 Endoplasmic reticulum 1 0.500181715232577 1 0.999636569534846 hm5C_site_5810 DeepMRMD:1;iRNA_m5C:0.999636569534846 5811 chr1 22336308 22336308 1 + G A rs12908 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACAGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA < 41bp 1 0.403881634741266 1 0.030836820602417 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336308 synonymous SNV . 0 3 hm5C_associated_SNPs_2569 0 0 0 0 1 Endoplasmic reticulum 1 0.500345487539364 1 0.999309024921273 hm5C_site_5811 DeepMRMD:1;iRNA_m5C:0.999309024921273 5812 chr1 23240134 23240134 1 + T C rs111422315 23240154 + 23240134 23240174 41 TGCTCTATCCACTGCAGGGCCAGCCACTCGCCAGGAGGCCA CGCTCTATCCACTGCAGGGCCAGCCACTCGCCAGGAGGCCA < 41bp 1 0.251646955125163 1 0.153185993432999 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB2 ENSG00000133216 UTR3 Human protein_coding chr1:23240154 chr1:23240134 . . 0 1 hm5C_associated_SNPs_2570 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5812 DeepMRMD:1;iRNA_m5C:0.999536712157815 5813 chr1 23240175 23240175 1 + C T rs574015572 23240157 + 23240137 23240177 41 TCTATCCACTGCAGGGCCAGCCACTCGCCAGGAGGCCACGG TCTATCCACTGCAGGGCCAGCCACTCGCCAGGAGGCCATGG < 41bp 1 0.124349893680543 1 0.158546566963196 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23240157 chr1:23240175 nonsynonymous SNV 0.903 1 39 hm5C_associated_SNPs_2571 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921095 1 0.99953671215781 hm5C_site_5813 DeepMRMD:1;iRNA_m5C:0.99953671215781 5814 chr1 24018307 24018307 1 + C T rs202059289 24018298 + 24018278 24018318 41 GGCCGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGC GGCCGGAAGCTCCGCTTTCTCTTCCTGCTTTCCATCATGGC < 41bp 1 0.401421385473032 1 0.709935426712036 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL11 ENSG00000142676 UTR5 Human protein_coding chr1:24018298 chr1:24018307 . . 0 30 hm5C_associated_SNPs_2572 0 0 1 0 1 Cytosol 1 0.500231643921092 0.580129146575928 0.999536712157815 hm5C_site_5814 DeepMRMD:0.580129146575928;iRNA_m5C:0.999536712157815 5815 chr1 24018307 24018307 1 + C T rs202059289 24018301 + 24018281 24018321 41 CGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCGGT CGGAAGCTCCGCTTTCTCTTCCTGCTTTCCATCATGGCGGT < 41bp 1 0.355608337921516 1 0.384294778108597 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL11 ENSG00000142676 UTR5 Human protein_coding chr1:24018301 chr1:24018307 . . 0 27 hm5C_associated_SNPs_2573 0 0 1 0 1 Cytosol 1 0.500231643921103 1 0.999536712157793 hm5C_site_5815 DeepMRMD:1;iRNA_m5C:0.999536712157793 5816 chr1 24018307 24018307 1 + C T rs202059289 24018302 + 24018282 24018322 41 GGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCGGTG GGAAGCTCCGCTTTCTCTTCCTGCTTTCCATCATGGCGGTG < 41bp 1 0.481865606035982 1 0.120418071746826 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 UTR5 Human protein_coding chr1:24018302 chr1:24018307 . . 0 26 hm5C_associated_SNPs_2574 0 0 1 0 1 Cytosol 1 0.500231643921098 1 0.999536712157805 hm5C_site_5816 DeepMRMD:1;iRNA_m5C:0.999536712157805 5817 chr1 24020352 24020352 1 + C T rs562572818 24020369 + 24020349 24020389 41 CCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG CCATTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG < 41bp 1 0.127432758184907 1 0.422713965177536 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020369 chr1:24020352 synonymous SNV . 0 4 hm5C_associated_SNPs_2576 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_5817 DeepMRMD:1;iRNA_m5C:0.999536712157815 5818 chr1 24020352 24020352 1 + C T rs562572818 24020370 + 24020350 24020390 41 CACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA CATTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA < 41bp 1 0.625269027220879 1 0.363244444131851 experiment 0.749461945558243 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020370 chr1:24020352 synonymous SNV . 0 3 hm5C_associated_SNPs_2577 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_5818 DeepMRMD:1;iRNA_m5C:0.999536712157816 5819 chr1 24114473 24114473 1 + G A rs117386588 24114482 + 24114462 24114502 41 CTTAAGCTTGGGGAGAAGGTCTTTTCCACTGCCTAGCTAAG CTTAAGCTTGGAGAGAAGGTCTTTTCCACTGCCTAGCTAAG < 41bp 1 0.165406952132803 1 0.0183172225952148 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PITHD1 ENSG00000057757 UTR3 Human protein_coding chr1:24114482 chr1:24114473 . . 0 12 hm5C_associated_SNPs_2578 0 0 1 1 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_5819 DeepMRMD:1;iRNA_m5C:0.999536712157815 5820 chr1 24114480 24114480 1 + G A rs368216872 24114482 + 24114462 24114502 41 CTTAAGCTTGGGGAGAAGGTCTTTTCCACTGCCTAGCTAAG CTTAAGCTTGGGGAGAAGATCTTTTCCACTGCCTAGCTAAG < 41bp 1 0.218657969828496 1 0.0280488431453705 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PITHD1 ENSG00000057757 UTR3 Human protein_coding chr1:24114482 chr1:24114480 . . 0 19 hm5C_associated_SNPs_2579 0 0 1 4 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_5820 DeepMRMD:1;iRNA_m5C:0.999536712157815 5821 chr1 24121411 24121411 1 + C G rs565797797 24121405 + 24121385 24121425 41 TCCTTCCTGGCCTTAGCCACCTGGCTCTGTCTGCAGCAGGG TCCTTCCTGGCCTTAGCCACCTGGCTGTGTCTGCAGCAGGG < 41bp 1 0.557690553119808 1 0.180792599916458 experiment 0.884618893760384 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LYPLA2 ENSG00000011009 UTR3 Human protein_coding chr1:24121405 chr1:24121411 . . 0 27 hm5C_associated_SNPs_2580 0 0 1 0 0 Ribosome 1 0.500231612638181 1 0.999536774723637 hm5C_site_5821 DeepMRMD:1;iRNA_m5C:0.999536774723637 5822 chr1 24121411 24121411 1 + C G rs565797797 24121409 + 24121389 24121429 41 TCCTGGCCTTAGCCACCTGGCTCTGTCTGCAGCAGGGGCAG TCCTGGCCTTAGCCACCTGGCTGTGTCTGCAGCAGGGGCAG < 41bp 1 0.649539110853503 1 0.273451656103134 experiment 0.700921778292994 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LYPLA2 ENSG00000011009 UTR3 Human protein_coding chr1:24121409 chr1:24121411 . . 0 23 hm5C_associated_SNPs_2581 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5822 DeepMRMD:1;iRNA_m5C:0.999536712157815 5823 chr1 24668716 24668716 1 + C A rs147284380 24668711 + 24668691 24668731 41 CTATGACTGTGGCTTGGGCACTGAGCGCCTGGTACACCGTG CTATGACTGTGGCTTGGGCACTGAGAGCCTGGTACACCGTG < 41bp 1 0.674036388766078 1 0.284115552902222 experiment 0.651927222467845 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24668711 chr1:24668716 nonsynonymous SNV 0.948 1 26 hm5C_associated_SNPs_2582 0 0 0 0 1 Nucleus 1 0.500218896814891 1 0.999562206370219 hm5C_site_5823 DeepMRMD:1;iRNA_m5C:0.999562206370219 5824 chr1 24782710 24782710 1 + C T rs117938741 24782707 + 24782687 24782727 41 GGGAACCTGCAGCTTGACTACCCCATCTTCTACGTGATGTT GGGAACCTGCAGCTTGACTACCCTATCTTCTACGTGATGTT < 41bp 1 0.224180170676473 1 0.0536659061908722 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24782707 chr1:24782710 synonymous SNV . 0 24 hm5C_associated_SNPs_2583 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643470237 1 0.999536713059526 hm5C_site_5824 DeepMRMD:1;iRNA_m5C:0.999536713059526 5825 chr1 24796327 24796327 1 + G A rs41268767 24796319 + 24796299 24796339 41 AAACGAAACTTGGTTTTGGTCCTGTGAGGACTACTTGTTTG AAACGAAACTTGGTTTTGGTCCTGTGAGAACTACTTGTTTG < 41bp 1 0.142749169605779 1 0.078559398651123 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NIPAL3 ENSG00000001461 UTR3 Human protein_coding chr1:24796319 chr1:24796327 . . 0 29 hm5C_associated_SNPs_2584 0 0 1 0 0 Endoplasmic reticulum 1 0.500287403397836 1 0.999425193204329 hm5C_site_5825 DeepMRMD:1;iRNA_m5C:0.999425193204329 5826 chr1 24996669 24996669 1 + G A rs149380642 24996652 + 24996632 24996672 41 GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGT GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCAGGT < 41bp 1 0.189915150624096 1 0.0336529314517975 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996652 chr1:24996669 nonsynonymous SNV 0.928 2 38 hm5C_associated_SNPs_2585 0 0 1 0 1 Cytosol 1 0.500231643920198 1 0.999536712159603 hm5C_site_5826 DeepMRMD:1;iRNA_m5C:0.999536712159603 5827 chr1 24996669 24996669 1 + G A rs149380642 24996673 + 24996653 24996693 41 CTCCCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA CTCCCGATCTGTCTCCAGGTCTCCTGAGCCAGCAGCTAAAA < 41bp 1 0.601506507103311 1 0.0610335469245911 experiment 0.796986985793378 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996673 chr1:24996669 nonsynonymous SNV 0.928 2 17 hm5C_associated_SNPs_2587 0 0 1 0 1 Cytosol 1 0.50024143745173 1 0.99951712509654 hm5C_site_5827 DeepMRMD:1;iRNA_m5C:0.99951712509654 5828 chr1 24996669 24996669 1 + G A rs149380642 24996676 + 24996656 24996696 41 CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC CCGATCTGTCTCCAGGTCTCCTGAGCCAGCAGCTAAAAAGC < 41bp 1 0.569464261559458 1 0.231839954853058 experiment 0.861071476881084 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996676 chr1:24996669 nonsynonymous SNV 0.928 2 14 hm5C_associated_SNPs_2588 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_5828 DeepMRMD:1;iRNA_m5C:0.999536712157815 5829 chr1 24996669 24996669 1 + G A rs149380642 24996681 + 24996661 24996701 41 CTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCA CTGTCTCCAGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCA < 41bp 1 0.209712126996112 1 0.531815648078918 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996681 chr1:24996669 nonsynonymous SNV 0.928 2 9 hm5C_associated_SNPs_2589 0 0 1 0 1 Cytosol 1 0.500231643921113 0.936368703842164 0.999536712157773 hm5C_site_5829 DeepMRMD:0.936368703842164;iRNA_m5C:0.999536712157773 5830 chr1 24996669 24996669 1 + G A rs149380642 24996688 + 24996668 24996708 41 CGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTC CAGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTC < 41bp 1 0.617960239356578 1 0.60322368144989 experiment 0.764079521286844 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996688 chr1:24996669 nonsynonymous SNV 0.928 2 2 hm5C_associated_SNPs_2590 0 0 1 0 1 Cytosol 1 0.500231643919106 0.79355263710022 0.999536712161787 hm5C_site_5830 DeepMRMD:0.79355263710022;iRNA_m5C:0.999536712161787 5831 chr1 24996724 24996724 1 + C G rs200488866 24996705 + 24996685 24996725 41 CAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCT CAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTGT < 41bp 1 0.0528825908733647 1 0.0174388289451599 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996705 chr1:24996724 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_2591 0 0 1 0 0 Cytosol 1 0.500231643921108 1 0.999536712157783 hm5C_site_5831 DeepMRMD:1;iRNA_m5C:0.999536712157783 5832 chr1 24996724 24996724 1 + C G rs200488866 24996709 + 24996689 24996729 41 TAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCTCAGT TAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTGTCAGT < 41bp 1 0.0546879519326668 1 0.055995911359787 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996709 chr1:24996724 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_2592 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_5832 DeepMRMD:1;iRNA_m5C:0.999536712157812 5833 chr1 25893961 25893961 1 + C A rs370958045 25893960 + 25893940 25893980 41 CCCCCCAGCACAGGAGAGCACCCACAGCCGCAGAAGGGGAA CCCCCCAGCACAGGAGAGCACACACAGCCGCAGAAGGGGAA < 41bp 1 0.338074874264189 1 0.073498547077179 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LDLRAP1 ENSG00000157978 UTR3 Human protein_coding chr1:25893960 chr1:25893961 . . 0 22 hm5C_associated_SNPs_2593 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5833 DeepMRMD:1;iRNA_m5C:0.999536712157815 5834 chr1 26080052 26080052 1 + C T rs12073358 26080043 + 26080023 26080063 41 TTCAACACCCCCACGGGAATCCCAAAGGGCGTGGTGAGCTT TTCAACACCCCCACGGGAATCCCAAAGGGTGTGGTGAGCTT < 41bp 1 0.484488596266818 1 0.31877475976944 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26080043 chr1:26080052 synonymous SNV . 0 30 hm5C_associated_SNPs_2594 0 0 0 0 2 exosome 1 0.500231643919904 1 0.999536712160191 hm5C_site_5834 DeepMRMD:1;iRNA_m5C:0.999536712160191 5835 chr1 26109105 26109105 1 + C T rs370236094 26109121 + 26109101 26109141 41 AAGCCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC AAGCTGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC < 41bp 1 0.583507123062144 1 0.794283330440521 experiment 0.832985753875712 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26109121 chr1:26109105 synonymous SNV 0.624 0 5 hm5C_associated_SNPs_2595 0 0 0 0 2 exosome 1 0.500231643923563 0.411433339118958 0.999536712152874 hm5C_site_5835 DeepMRMD:0.411433339118958;iRNA_m5C:0.999536712152874 5836 chr1 26109126 26109126 1 + C T rs150201998 26109121 + 26109101 26109141 41 AAGCCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC AAGCCGGTTTCTCTGGGATCCAAGATGTGTACAGTAGCACC < 41bp 1 0.670461350355968 1 0.804724454879761 experiment 0.659077299288064 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26109121 chr1:26109126 synonymous SNV 0.698 0 26 hm5C_associated_SNPs_2596 0 0 1 0 2 exosome 1 0.500231644243493 0.390551090240478 0.999536711513014 hm5C_site_5836 DeepMRMD:0.390551090240478;iRNA_m5C:0.999536711513014 5837 chr1 26135083 26135083 1 + G A rs199742668 26135073 + 26135053 26135093 41 TGCTTTCCCCCGCCCCAGGTCTCCCGCCTCGCCCTGTCCGG TGCTTTCCCCCGCCCCAGGTCTCCCGCCTCACCCTGTCCGG < 41bp 1 0.278408631621769 1 0.142857044935226 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26135073 chr1:26135083 nonsynonymous SNV 0.794 2 31 hm5C_associated_SNPs_2597 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5837 DeepMRMD:1;iRNA_m5C:0.999536712157815 5838 chr1 26136282 26136282 1 + C T rs147587542 26136269 + 26136249 26136289 41 CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCC CATCATCCTCTCCAAAGACGCCACCCACGTCCGTGACTTCC < 41bp 1 0.0411652053269671 1 0.088612824678421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136269 chr1:26136282 synonymous SNV . 0 34 hm5C_associated_SNPs_2598 2 0 1 0 1 unknown 1 0.500231643759532 1 0.999536712480936 hm5C_site_5838 DeepMRMD:1;iRNA_m5C:0.999536712480936 not specified not specified 5839 chr1 26136282 26136282 1 + C T rs147587542 26136270 + 26136250 26136290 41 ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCG ATCATCCTCTCCAAAGACGCCACCCACGTCCGTGACTTCCG < 41bp 1 0.126922100899751 1 0.0567625761032104 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136270 chr1:26136282 synonymous SNV . 0 33 hm5C_associated_SNPs_2599 2 0 1 0 1 unknown 1 0.500176820053314 1 0.999646359893372 hm5C_site_5839 DeepMRMD:1;iRNA_m5C:0.999646359893372 not specified not specified 5840 chr1 26136282 26136282 1 + C T rs147587542 26136273 + 26136253 26136293 41 ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCT ATCCTCTCCAAAGACGCCACCCACGTCCGTGACTTCCGGCT < 41bp 1 0.0966846016824895 1 0.0679886937141418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136273 chr1:26136282 synonymous SNV . 0 30 hm5C_associated_SNPs_2600 2 0 1 0 1 unknown 1 0.500231643925224 1 0.999536712149553 hm5C_site_5840 DeepMRMD:1;iRNA_m5C:0.999536712149553 not specified not specified 5841 chr1 26136282 26136282 1 + C T rs147587542 26136274 + 26136254 26136294 41 TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTC TCCTCTCCAAAGACGCCACCCACGTCCGTGACTTCCGGCTC < 41bp 1 0.509266004932944 1 0.080597460269928 experiment 0.981467990134112 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136274 chr1:26136282 synonymous SNV . 0 29 hm5C_associated_SNPs_2601 2 0 1 0 1 unknown 1 0.50023161698246 1 0.999536766035079 hm5C_site_5841 DeepMRMD:1;iRNA_m5C:0.999536766035079 not specified not specified 5842 chr1 26142151 26142151 1 + C A rs183272965 26142138 + 26142118 26142158 41 TCTCATCCACCTTTGAAGACCCGTCCACGGCCACCTACATG TCTCATCCACCTTTGAAGACCCGTCCACGGCCAACTACATG < 41bp 1 0.0222084286634438 1 0.0885903537273407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26142138 chr1:26142151 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_2602 1 0 1 0 0 unknown 1 0.500231659147615 1 0.99953668170477 hm5C_site_5842 DeepMRMD:1;iRNA_m5C:0.99953668170477 not specified not specified 5843 chr1 26142422 26142422 1 + G C rs527610991 26142417 + 26142397 26142437 41 GGCTGACTGGGCAGAGGAACCTCTAGCTCTGACTGTCACTC GGCTGACTGGGCAGAGGAACCTCTACCTCTGACTGTCACTC < 41bp 1 0.555979129620487 1 0.721762537956238 experiment 0.888041740759026 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74773;RNA-BisSeq;Huh7;Control SELENON ENSG00000162430 UTR3 Human protein_coding chr1:26142417 chr1:26142422 . . 0 26 hm5C_associated_SNPs_2603 0 0 1 0 0 unknown 1 0.500231643921092 0.556474924087524 0.999536712157816 hm5C_site_5843 DeepMRMD:0.556474924087524;iRNA_m5C:0.999536712157816 5844 chr1 26142437 26142437 1 + C T rs115473437 26142417 + 26142397 26142437 41 GGCTGACTGGGCAGAGGAACCTCTAGCTCTGACTGTCACTC GGCTGACTGGGCAGAGGAACCTCTAGCTCTGACTGTCACTT < 41bp 1 0.618216141845398 1 0.677272439002991 experiment 0.763567716309205 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74773;RNA-BisSeq;Huh7;Control SELENON ENSG00000162430 UTR3 Human protein_coding chr1:26142417 chr1:26142437 . . 0 41 hm5C_associated_SNPs_2604 1 0 1 0 0 unknown 1 0.50023164392025 0.645455121994018 0.9995367121595 hm5C_site_5844 DeepMRMD:0.645455121994018;iRNA_m5C:0.9995367121595 SEPN1-Related Disorders SEPN1-Related Disorders 5845 chr1 26142437 26142437 1 + C T rs115473437 26142445 + 26142425 26142465 41 CTGACTGTCACTCGGCTCTCCCTACCCATTTGGCTCTGGAA CTGACTGTCACTTGGCTCTCCCTACCCATTTGGCTCTGGAA < 41bp 1 0.0156292972377834 1 0.199934273958206 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SELENON ENSG00000162430 UTR3 Human protein_coding chr1:26142445 chr1:26142437 . . 0 13 hm5C_associated_SNPs_2605 1 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_5845 DeepMRMD:1;iRNA_m5C:0.999536712157816 SEPN1-Related Disorders SEPN1-Related Disorders 5846 chr1 26142980 26142980 1 + G A rs80311079 26142985 + 26142965 26143005 41 TCTCTGCAGGACTGCGGGAGCCAGCGCTCCTGCCGCCCCTC TCTCTGCAGGACTGCAGGAGCCAGCGCTCCTGCCGCCCCTC < 41bp 1 0.400142304743699 1 0.735195100307465 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 UTR3 Human protein_coding chr1:26142985 chr1:26142980 . . 0 16 hm5C_associated_SNPs_2606 1 0 1 0 0 unknown 1 0.500231992927375 0.52960979938507 0.999536014145251 hm5C_site_5846 DeepMRMD:0.52960979938507;iRNA_m5C:0.999536014145251 SEPN1-Related Disorders SEPN1-Related Disorders 5847 chr1 26142989 26142989 1 + C T rs11556312 26142985 + 26142965 26143005 41 TCTCTGCAGGACTGCGGGAGCCAGCGCTCCTGCCGCCCCTC TCTCTGCAGGACTGCGGGAGCCAGTGCTCCTGCCGCCCCTC < 41bp 1 0.508614578216732 1 0.757407069206238 experiment 0.982770843566535 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 UTR3 Human protein_coding chr1:26142985 chr1:26142989 . . 0 25 hm5C_associated_SNPs_2607 1 0 0 0 0 unknown 1 0.500231643298154 0.485185861587524 0.999536713403691 hm5C_site_5847 DeepMRMD:0.485185861587524;iRNA_m5C:0.999536713403691 SEPN1-Related Disorders SEPN1-Related Disorders 5848 chr1 26143147 26143147 1 + C T rs116835124 26143127 + 26143107 26143147 41 GCTCTTCTACCTCTGGGGCACCACGGACTCCCCTTGGCCAC GCTCTTCTACCTCTGGGGCACCACGGACTCCCCTTGGCCAT < 41bp 1 0.401080112297603 1 0.11345437169075 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SELENON ENSG00000162430 UTR3 Human protein_coding chr1:26143127 chr1:26143147 . . 0 41 hm5C_associated_SNPs_2608 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5848 DeepMRMD:1;iRNA_m5C:0.999536712157815 5849 chr1 26143147 26143147 1 + C T rs116835124 26143128 + 26143108 26143148 41 CTCTTCTACCTCTGGGGCACCACGGACTCCCCTTGGCCACT CTCTTCTACCTCTGGGGCACCACGGACTCCCCTTGGCCATT < 41bp 1 0.628932879166771 1 0.550913870334625 experiment 0.742134241666458 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SELENON ENSG00000162430 UTR3 Human protein_coding chr1:26143128 chr1:26143147 . . 0 40 hm5C_associated_SNPs_2609 0 0 1 0 0 unknown 1 0.500231643921027 0.89817225933075 0.999536712157946 hm5C_site_5849 DeepMRMD:0.89817225933075;iRNA_m5C:0.999536712157946 5850 chr1 26596080 26596080 1 + G A rs7550997 26596093 + 26596073 26596113 41 GAGAGAAGCAGAATTCTCCTCCGCTGGACATAGGTAAATAA GAGAGAAACAGAATTCTCCTCCGCTGGACATAGGTAAATAA < 41bp 1 0.156107143369779 1 0.247740805149078 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP85 ENSG00000130695 CDS Human protein_coding chr1:26596093 chr1:26596080 nonsynonymous SNV 0.465 0 8 hm5C_associated_SNPs_2610 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_5850 DeepMRMD:1;iRNA_m5C:0.999536712157815 5851 chr1 26596095 26596095 1 + G A rs76880849 26596093 + 26596073 26596113 41 GAGAGAAGCAGAATTCTCCTCCGCTGGACATAGGTAAATAA GAGAGAAGCAGAATTCTCCTCCACTGGACATAGGTAAATAA < 41bp 1 0.111218471551677 1 0.255843371152878 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP85 ENSG00000130695 CDS Human protein_coding chr1:26596093 chr1:26596095 nonsynonymous SNV 0.010 0 23 hm5C_associated_SNPs_2611 0 0 1 0 1 Nucleus 1 0.500231643921088 1 0.999536712157824 hm5C_site_5851 DeepMRMD:1;iRNA_m5C:0.999536712157824 5852 chr1 26596096 26596096 1 + C T rs183440117 26596093 + 26596073 26596113 41 GAGAGAAGCAGAATTCTCCTCCGCTGGACATAGGTAAATAA GAGAGAAGCAGAATTCTCCTCCGTTGGACATAGGTAAATAA < 41bp 1 0.079615325847861 1 0.298396348953247 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP85 ENSG00000130695 CDS Human protein_coding chr1:26596093 chr1:26596096 nonsynonymous SNV 0.181 1 24 hm5C_associated_SNPs_2612 0 0 1 0 1 Nucleus 1 0.500231643921178 1 0.999536712157644 hm5C_site_5852 DeepMRMD:1;iRNA_m5C:0.999536712157644 5853 chr1 26597521 26597521 1 + T G rs140332904 26597518 + 26597498 26597538 41 CTTTCAGCCTGCAAGATAAACAGTCTGTGGAGGAGACCAGT CTTTCAGCCTGCAAGATAAACAGGCTGTGGAGGAGACCAGT < 41bp 1 0.540416886140871 1 0.722316086292267 experiment 0.919166227718257 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEP85 ENSG00000130695 CDS Human protein_coding chr1:26597518 chr1:26597521 nonsynonymous SNV 0.940 0 24 hm5C_associated_SNPs_2613 0 0 1 0 2 Nucleus 1 0.500231645875986 0.555367827415466 0.999536708248029 hm5C_site_5853 DeepMRMD:0.555367827415466;iRNA_m5C:0.999536708248029 5854 chr1 26606560 26606560 1 + C T rs558012736 26606554 + 26606534 26606574 41 CGGGCGGAGCAGGAAGGAAACCGCTCCCGAGCACGGCGGCG CGGGCGGAGCAGGAAGGAAACCGCTCTCGAGCACGGCGGCG < 41bp 1 0.621981651558532 1 0.112564623355865 experiment 0.756036696882937 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BGRL3 ENSG00000142669 UTR5 Human protein_coding chr1:26606554 chr1:26606560 . 1.000 0 27 hm5C_associated_SNPs_2615 0 0 1 0 0 Ribosome 1 0.500231650196106 1 0.999536699607787 hm5C_site_5854 DeepMRMD:1;iRNA_m5C:0.999536699607787 5855 chr1 26607632 26607632 1 + T C rs116476745 26607647 + 26607627 26607667 41 CAGAGTTCCCCTGCTGGACTCCATCACCACACTCCCCCCAG CAGAGCTCCCCTGCTGGACTCCATCACCACACTCCCCCCAG < 41bp 1 0.128940453607785 1 0.23531237244606 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SH3BGRL3 ENSG00000142669 UTR3 Human protein_coding chr1:26607647 chr1:26607632 . . 0 6 hm5C_associated_SNPs_2616 0 0 1 0 1 Ribosome 1 0.500231236098235 1 0.999537527803529 hm5C_site_5855 DeepMRMD:1;iRNA_m5C:0.999537527803529 5856 chr1 26607632 26607632 1 + T C rs116476745 26607648 + 26607628 26607668 41 AGAGTTCCCCTGCTGGACTCCATCACCACACTCCCCCCAGC AGAGCTCCCCTGCTGGACTCCATCACCACACTCCCCCCAGC < 41bp 1 0.47548090624109 1 0.352783143520355 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SH3BGRL3 ENSG00000142669 UTR3 Human protein_coding chr1:26607648 chr1:26607632 . . 0 5 hm5C_associated_SNPs_2617 0 0 1 0 1 Ribosome 1 0.500231643757291 1 0.999536712485419 hm5C_site_5856 DeepMRMD:1;iRNA_m5C:0.999536712485419 5857 chr1 26883511 26883511 1 + A C rs2229712 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATACCGTCGTGAGATCACGCCACCCTTCAAGCCAGC < 41bp 1 0.312259409820983 1 0.629072785377502 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883511 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_2618 0 0 1 0 1 Ribosome 1 0.500230386051237 0.741854429244996 0.999539227897525 hm5C_site_5857 DeepMRMD:0.741854429244996;iRNA_m5C:0.999539227897525 5858 chr1 27023062 27023062 1 + G A rs547230159 27023074 + 27023054 27023094 41 GCCGGGCAGGAAAGCGAGGGCCCCGCCGTGGGGCCGCCGCA GCCGGGCAAGAAAGCGAGGGCCCCGCCGTGGGGCCGCCGCA < 41bp 1 0.358231184774192 1 0.174647092819214 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27023074 chr1:27023062 synonymous SNV . 0 9 hm5C_associated_SNPs_2619 0 0 1 0 0 Nucleus 1 0.500231643921123 1 0.999536712157755 hm5C_site_5858 DeepMRMD:1;iRNA_m5C:0.999536712157755 5859 chr1 27023062 27023062 1 + G A rs547230159 27023075 + 27023055 27023095 41 CCGGGCAGGAAAGCGAGGGCCCCGCCGTGGGGCCGCCGCAG CCGGGCAAGAAAGCGAGGGCCCCGCCGTGGGGCCGCCGCAG < 41bp 1 0.338521513468199 1 0.317683815956116 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27023075 chr1:27023062 synonymous SNV . 0 8 hm5C_associated_SNPs_2620 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_5859 DeepMRMD:1;iRNA_m5C:0.999536712157815 5860 chr1 27023062 27023062 1 + G A rs547230159 27023076 + 27023056 27023096 41 CGGGCAGGAAAGCGAGGGCCCCGCCGTGGGGCCGCCGCAGC CGGGCAAGAAAGCGAGGGCCCCGCCGTGGGGCCGCCGCAGC < 41bp 1 0.426072729844312 1 0.213148087263107 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27023076 chr1:27023062 synonymous SNV . 0 7 hm5C_associated_SNPs_2621 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_5860 DeepMRMD:1;iRNA_m5C:0.999536712157815 5861 chr1 27023252 27023252 1 + C T rs571264557 27023266 + 27023246 27023286 41 ACGGAGCCGCCCGGCGGCGGCGGTGGCGGCAGCAGCGATGG ACGGAGTCGCCCGGCGGCGGCGGTGGCGGCAGCAGCGATGG < 41bp 1 0.684008233852097 1 0.713597238063812 experiment 0.631983532295806 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27023266 chr1:27023252 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_2623 1 0 1 0 0 Nucleus 1 0.500231713047579 0.572805523872376 0.999536573904841 hm5C_site_5861 DeepMRMD:0.572805523872376;iRNA_m5C:0.999536573904841 not specified not specified 5862 chr1 27023267 27023267 1 + G A rs536658556 27023266 + 27023246 27023286 41 ACGGAGCCGCCCGGCGGCGGCGGTGGCGGCAGCAGCGATGG ACGGAGCCGCCCGGCGGCGGCAGTGGCGGCAGCAGCGATGG < 41bp 1 0.651380144499196 1 0.488214284181595 experiment 0.697239711001607 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27023266 chr1:27023267 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_2624 0 0 1 0 0 Nucleus 1 0.500231643921095 1 0.999536712157811 hm5C_site_5862 DeepMRMD:1;iRNA_m5C:0.999536712157811 5863 chr1 27088719 27088719 1 + T C rs564495050 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCGTCAGCCCTCCGGAGGACAGATA < 41bp 1 0.183032596058617 1 0.103920996189117 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088719 synonymous SNV . 0 26 hm5C_associated_SNPs_2626 0 0 1 0 2 Nucleus 1 0.500231533023716 1 0.999536933952568 hm5C_site_5863 DeepMRMD:1;iRNA_m5C:0.999536933952568 5864 chr1 27181427 27181427 1 + G A rs760093 27181407 + 27181387 27181427 41 CATATCCCCTGGGCTGCCCCCTGCCCCATCCCCTTTGAGTG CATATCCCCTGGGCTGCCCCCTGCCCCATCCCCTTTGAGTA < 41bp 1 0.217349754281451 1 0.444362282752991 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZDHHC18 ENSG00000204160 UTR3 Human protein_coding chr1:27181407 chr1:27181427 . . 0 41 hm5C_associated_SNPs_2627 0 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5864 DeepMRMD:1;iRNA_m5C:0.999536712157815 5865 chr1 27181427 27181427 1 + G A rs760093 27181411 + 27181391 27181431 41 TCCCCTGGGCTGCCCCCTGCCCCATCCCCTTTGAGTGTCAG TCCCCTGGGCTGCCCCCTGCCCCATCCCCTTTGAGTATCAG < 41bp 1 0.0629265147350358 1 0.461398959159851 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZDHHC18 ENSG00000204160 UTR3 Human protein_coding chr1:27181411 chr1:27181427 . . 0 37 hm5C_associated_SNPs_2628 0 0 1 1 0 Ribosome 1 0.500231643733835 1 0.999536712532329 hm5C_site_5865 DeepMRMD:1;iRNA_m5C:0.999536712532329 5866 chr1 27181475 27181475 1 + C T rs144835502 27181460 + 27181440 27181480 41 TGAGCCAAGGGGACAGGGGGCACGTGCACTGGTCACGAGAA TGAGCCAAGGGGACAGGGGGCACGTGCACTGGTCATGAGAA < 41bp 1 0.583884604154118 1 0.0918984115123749 experiment 0.832230791691763 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZDHHC18 ENSG00000204160 UTR3 Human protein_coding chr1:27181460 chr1:27181475 . . 0 36 hm5C_associated_SNPs_2629 0 0 1 0 0 Ribosome 1 0.500231643921198 1 0.999536712157605 hm5C_site_5866 DeepMRMD:1;iRNA_m5C:0.999536712157605 5867 chr1 27269164 27269164 1 + A G rs142365524 27269155 + 27269135 27269175 41 CCCTGATTGTAAGCAGGATACTGAGGAAGATGAGGAGGAAG CCCTGATTGTAAGCAGGATACTGAGGAAGGTGAGGAGGAAG < 41bp 1 0.586451604611058 1 0.273881107568741 experiment 0.827096790777884 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUDC ENSG00000090273 CDS Human protein_coding chr1:27269155 chr1:27269164 nonsynonymous SNV 0.812 0 30 hm5C_associated_SNPs_2630 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5867 DeepMRMD:1;iRNA_m5C:0.999536712157815 5868 chr1 27634429 27634429 1 + C T rs561366548 27634439 + 27634419 27634459 41 GTCTCTTCTCCGTGACCTTTCTCTAGCCAGGGAGAAGGGAG GTCTCTTCTCTGTGACCTTTCTCTAGCCAGGGAGAAGGGAG < 41bp 1 0.504131526526286 1 0.76724898815155 experiment 0.991736946947428 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDTC1 ENSG00000142784 UTR3 Human protein_coding chr1:27634439 chr1:27634429 . . 0 11 hm5C_associated_SNPs_2631 0 0 1 0 0 Cytosol 1 0.500231644092516 0.4655020236969 0.999536711814968 hm5C_site_5868 DeepMRMD:0.4655020236969;iRNA_m5C:0.999536711814968 5869 chr1 27662666 27662666 1 + A G rs9203 27662665 + 27662645 27662685 41 AGACAGAGCAGTGTAGACAGCACTCAGCCCCAGCCCCAGGT AGACAGAGCAGTGTAGACAGCGCTCAGCCCCAGCCCCAGGT < 41bp 1 0.34574673679401 1 0.260140269994736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM222 ENSG00000186501 UTR3 Human protein_coding chr1:27662665 chr1:27662666 . . 0 22 hm5C_associated_SNPs_2633 0 0 1 0 0 Ribosome 1 0.500231643921023 1 0.999536712157953 hm5C_site_5869 DeepMRMD:1;iRNA_m5C:0.999536712157953 5870 chr1 27662666 27662666 1 + A G rs9203 27662667 + 27662647 27662687 41 ACAGAGCAGTGTAGACAGCACTCAGCCCCAGCCCCAGGTGT ACAGAGCAGTGTAGACAGCGCTCAGCCCCAGCCCCAGGTGT < 41bp 1 0.524827374165332 1 0.111957103013992 experiment 0.950345251669335 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM222 ENSG00000186501 UTR3 Human protein_coding chr1:27662667 chr1:27662666 . . 0 20 hm5C_associated_SNPs_2634 0 0 1 0 0 Ribosome 1 0.500231643903448 1 0.999536712193104 hm5C_site_5870 DeepMRMD:1;iRNA_m5C:0.999536712193104 5871 chr1 27662684 27662684 1 + G A rs115588557 27662665 + 27662645 27662685 41 AGACAGAGCAGTGTAGACAGCACTCAGCCCCAGCCCCAGGT AGACAGAGCAGTGTAGACAGCACTCAGCCCCAGCCCCAGAT < 41bp 1 0.31413144503932 1 0.0443465113639832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM222 ENSG00000186501 UTR3 Human protein_coding chr1:27662665 chr1:27662684 . . 0 40 hm5C_associated_SNPs_2635 0 0 1 0 0 Ribosome 1 0.500231643921083 1 0.999536712157833 hm5C_site_5871 DeepMRMD:1;iRNA_m5C:0.999536712157833 5872 chr1 27662684 27662684 1 + G A rs115588557 27662667 + 27662647 27662687 41 ACAGAGCAGTGTAGACAGCACTCAGCCCCAGCCCCAGGTGT ACAGAGCAGTGTAGACAGCACTCAGCCCCAGCCCCAGATGT < 41bp 1 0.533147924122413 1 0.0667047500610352 experiment 0.933704151755173 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM222 ENSG00000186501 UTR3 Human protein_coding chr1:27662667 chr1:27662684 . . 0 38 hm5C_associated_SNPs_2636 0 0 1 0 0 Ribosome 1 0.500231644038671 1 0.999536711922657 hm5C_site_5872 DeepMRMD:1;iRNA_m5C:0.999536711922657 5873 chr1 27720382 27720382 1 + C G rs138953484 27720377 + 27720357 27720397 41 GTGAATGTAAGCAGCGTGGGCCCAGCAGAGGGGCCCACAGG GTGAATGTAAGCAGCGTGGGCCCAGGAGAGGGGCCCACAGG < 41bp 1 0.583944647188981 1 0.342406988143921 experiment 0.832110705622037 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR3 ENSG00000181773 CDS Human protein_coding chr1:27720377 chr1:27720382 nonsynonymous SNV 0.004 0 26 hm5C_associated_SNPs_2637 0 0 0 0 1 nucleoplasm 1 0.500231643912482 1 0.999536712175036 hm5C_site_5873 DeepMRMD:1;iRNA_m5C:0.999536712175036 5874 chr1 27720382 27720382 1 + C G rs138953484 27720378 + 27720358 27720398 41 TGAATGTAAGCAGCGTGGGCCCAGCAGAGGGGCCCACAGGT TGAATGTAAGCAGCGTGGGCCCAGGAGAGGGGCCCACAGGT < 41bp 1 0.517660062011116 1 0.394191354513168 experiment 0.964679875977768 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPR3 ENSG00000181773 CDS Human protein_coding chr1:27720378 chr1:27720382 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_2638 0 0 0 0 1 nucleoplasm 1 0.50023164396874 1 0.99953671206252 hm5C_site_5874 DeepMRMD:1;iRNA_m5C:0.99953671206252 5875 chr1 27720382 27720382 1 + C G rs138953484 27720390 + 27720370 27720410 41 GCGTGGGCCCAGCAGAGGGGCCCACAGGTCCAGCCGCACCA GCGTGGGCCCAGGAGAGGGGCCCACAGGTCCAGCCGCACCA < 41bp 1 0.230199119866606 1 0.0603905618190765 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPR3 ENSG00000181773 CDS Human protein_coding chr1:27720390 chr1:27720382 nonsynonymous SNV 0.004 0 13 hm5C_associated_SNPs_2639 0 0 0 0 1 nucleoplasm 1 0.500231643921092 1 0.999536712157816 hm5C_site_5875 DeepMRMD:1;iRNA_m5C:0.999536712157816 5876 chr1 28099751 28099751 1 + C T rs574359778 28099765 + 28099745 28099785 41 AGCCTGCGGGTCCCGGCTGGCGGCTGCTTCCGGTAGGAGAG AGCCTGTGGGTCCCGGCTGGCGGCTGCTTCCGGTAGGAGAG < 41bp 1 0.683522927330432 1 0.793231666088104 experiment 0.632954145339136 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 UTR5 Human protein_coding chr1:28099765 chr1:28099751 . . 0 7 hm5C_associated_SNPs_2642 0 0 1 0 0 Ribosome 1 0.500231643921092 0.413536667823792 0.999536712157815 hm5C_site_5876 DeepMRMD:0.413536667823792;iRNA_m5C:0.999536712157815 5877 chr1 28099751 28099751 1 + C T rs574359778 28099768 + 28099748 28099788 41 CTGCGGGTCCCGGCTGGCGGCTGCTTCCGGTAGGAGAGCGG CTGTGGGTCCCGGCTGGCGGCTGCTTCCGGTAGGAGAGCGG < 41bp 1 0.606693418813686 1 0.425193578004837 experiment 0.786613162372628 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STX12 ENSG00000117758 UTR5 Human protein_coding chr1:28099768 chr1:28099751 . . 0 4 hm5C_associated_SNPs_2643 0 0 1 0 0 Ribosome 1 0.500231643927062 1 0.999536712145875 hm5C_site_5877 DeepMRMD:1;iRNA_m5C:0.999536712145875 5878 chr1 28099827 28099827 1 + C G rs151097430 28099839 + 28099819 28099859 41 ATGTCATACGGTCCCTTAGACATGTACCGGAACCCGGGGCC ATGTCATAGGGTCCCTTAGACATGTACCGGAACCCGGGGCC < 41bp 1 0.667636912644269 1 0.255973637104034 experiment 0.664726174711461 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099839 chr1:28099827 stopgain 0.992 1 9 hm5C_associated_SNPs_2644 0 0 1 0 0 Ribosome 1 0.500231655670173 1 0.999536688659655 hm5C_site_5878 DeepMRMD:1;iRNA_m5C:0.999536688659655 5879 chr1 28279736 28279736 1 + C T rs144312950 28279755 + 28279735 28279775 41 TCTATGCTGCTTTGGGAAATCATGATTTTCACCCCAAAAAC TTTATGCTGCTTTGGGAAATCATGATTTTCACCCCAAAAAC < 41bp 1 0.614538414343221 1 0.414602339267731 experiment 0.770923171313558 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28279755 chr1:28279736 synonymous SNV . 0 2 hm5C_associated_SNPs_2645 0 0 0 0 1 chromatin 1 0.500231643913279 1 0.999536712173442 hm5C_site_5879 DeepMRMD:1;iRNA_m5C:0.999536712173442 5880 chr1 28562671 28562671 1 + G A rs190185865 28562651 + 28562631 28562671 41 CATTAGCGCGTAACGAGAGACTGCTTGCTGCGGCAGAGACG CATTAGCGCGTAACGAGAGACTGCTTGCTGCGGCAGAGACA < 41bp 1 0.495286293858414 1 0.150444626808167 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATPIF1 ENSG00000130770 UTR5 Human protein_coding chr1:28562651 chr1:28562671 . . 0 41 hm5C_associated_SNPs_2646 0 0 1 0 0 Ribosome 1 0.50023164400304 1 0.999536711993921 hm5C_site_5880 DeepMRMD:1;iRNA_m5C:0.999536711993921 5881 chr1 28600574 28600574 1 + C T rs114922467 28600565 + 28600545 28600585 41 CCTCAGCTGACATCCTGGAGCCCTCTCCACACCCAGACATG CCTCAGCTGACATCCTGGAGCCCTCTCCATACCCAGACATG < 41bp 1 0.0206874586523463 1 0.0153647661209106 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600565 chr1:28600574 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_2647 0 0 1 0 2 Ribosome 1 0.500222953831891 1 0.999554092336217 hm5C_site_5881 DeepMRMD:1;iRNA_m5C:0.999554092336217 5882 chr1 28835866 28835866 1 + G T rs570763840 28835864 + 28835844 28835884 41 CCCAGGTTCAGGCGATTCTCCTGCCTCAGCCTCCCAAGTAG CCCAGGTTCAGGCGATTCTCCTTCCTCAGCCTCCCAAGTAG < 41bp 1 0.209277944608878 1 0.0542799234390259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNHG3 ENSG00000242125 ncRNA_exonic Human sense_intronic chr1:28835864 chr1:28835866 . . 0 23 hm5C_associated_SNPs_2648 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5882 DeepMRMD:1;iRNA_m5C:0.999536712157815 5883 chr1 28861636 28861636 1 + G A rs2066726 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATGTACCTGTGGTAAAGGTGGCCTCA < 41bp 1 0.300582107908707 1 0.238028407096863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861636 synonymous SNV . 0 20 hm5C_associated_SNPs_2649 0 0 1 0 2 Ribosome 1 0.500231643921118 1 0.999536712157765 hm5C_site_5883 DeepMRMD:1;iRNA_m5C:0.999536712157765 5884 chr1 28880201 28880201 1 + T C rs145048352 28880211 + 28880191 28880231 41 TTTGCCACCATGGGGGAGACCGTAATGAGCGTCAAAATTAT TTTGCCACCACGGGGGAGACCGTAATGAGCGTCAAAATTAT < 41bp 1 0.587768694472669 1 0.333475470542908 experiment 0.824462611054663 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28880211 chr1:28880201 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_2650 0 0 1 0 2 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_5884 DeepMRMD:1;iRNA_m5C:0.999536712157812 5885 chr1 28975120 28975120 1 + C A rs145438715 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC ATTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC < 41bp 1 0.613649537680613 1 0.200993150472641 experiment 0.772700924638773 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975120 . . 0 1 hm5C_associated_SNPs_2651 0 0 1 4 0 unknown 1 0.500231641097054 1 0.999536717805891 hm5C_site_5885 DeepMRMD:1;iRNA_m5C:0.999536717805891 5886 chr1 28975127 28975127 1 + C G rs192651029 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC CTTCTGTGGTGAGTGGCACACGTAGGGCAACTCGATTGCTC < 41bp 1 0.661451080009655 1 0.242402166128159 experiment 0.677097839980689 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975127 . . 0 8 hm5C_associated_SNPs_2652 0 0 1 2 0 unknown 1 0.500230776634174 1 0.999538446731651 hm5C_site_5886 DeepMRMD:1;iRNA_m5C:0.999538446731651 5887 chr1 28975150 28975150 1 + C G rs35910435 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC CTTCTGTCGTGAGTGGCACACGTAGGGCAAGTCGATTGCTC < 41bp 1 0.577015562711089 1 0.224917590618134 experiment 0.845968874577821 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975150 . . 0 31 hm5C_associated_SNPs_2653 0 0 1 0 0 unknown 1 0.500231482945997 1 0.999537034108006 hm5C_site_5887 DeepMRMD:1;iRNA_m5C:0.999537034108006 5888 chr1 28975152 28975152 1 + C A rs75113560 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC CTTCTGTCGTGAGTGGCACACGTAGGGCAACTAGATTGCTC < 41bp 1 0.58925396563872 1 0.189982175827026 experiment 0.821492068722561 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975152 . . 0 33 hm5C_associated_SNPs_2655 0 0 1 0 0 unknown 1 0.500231642308879 1 0.999536715382243 hm5C_site_5888 DeepMRMD:1;iRNA_m5C:0.999536715382243 5889 chr1 28975153 28975153 1 + G A rs368700594 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCAATTGCTC < 41bp 1 0.577589249860906 1 0.142604142427444 experiment 0.844821500278188 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975153 . . 0 34 hm5C_associated_SNPs_2657 0 0 1 0 0 unknown 1 0.500231647536369 1 0.999536704927262 hm5C_site_5889 DeepMRMD:1;iRNA_m5C:0.999536704927262 5890 chr1 28975174 28975174 1 + G A rs541092342 28975176 + 28975156 28975196 41 TGCTCTGCGTGCGGAATCGACATCAAGAGATTTCGGAAGCA TGCTCTGCGTGCGGAATCAACATCAAGAGATTTCGGAAGCA < 41bp 1 0.666608274365171 1 0.0956124663352966 experiment 0.666783451269658 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975176 chr1:28975174 . . 0 19 hm5C_associated_SNPs_2660 0 0 1 2 0 unknown 1 0.500233939837986 1 0.999532120324027 hm5C_site_5890 DeepMRMD:1;iRNA_m5C:0.999532120324027 5891 chr1 28975209 28975209 1 + A C rs111868204 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GTCTTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC < 41bp 1 0.63456954863817 1 0.463653892278671 experiment 0.730860902723661 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975209 . . 0 3 hm5C_associated_SNPs_2661 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5891 DeepMRMD:1;iRNA_m5C:0.999536712157815 5892 chr1 28975216 28975216 1 + C A rs192996376 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GTATTTGGGAAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC < 41bp 1 0.62137618812669 1 0.257187962532043 experiment 0.757247623746619 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975216 . . 0 10 hm5C_associated_SNPs_2662 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5892 DeepMRMD:1;iRNA_m5C:0.999536712157815 5893 chr1 28975216 28975216 1 + C A rs192996376 28975234 + 28975214 28975254 41 GGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG GGAAGCTGGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG < 41bp 1 0.648826060388039 1 0.506487488746643 experiment 0.702347879223921 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975234 chr1:28975216 . . 0 3 hm5C_associated_SNPs_2663 0 0 1 2 0 unknown 1 0.500231643826634 0.987025022506714 0.999536712346732 hm5C_site_5893 DeepMRMD:0.987025022506714;iRNA_m5C:0.999536712346732 5894 chr1 28975221 28975221 1 + G A rs143926421 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GTATTTGGGCAGCTAGTGATCGTTGGTCCCGGCGCCCTTTC < 41bp 1 0.628259334833751 1 0.447669386863708 experiment 0.743481330332499 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975221 . . 0 15 hm5C_associated_SNPs_2664 0 0 1 2 0 unknown 1 0.500231644269527 1 0.999536711460946 hm5C_site_5894 DeepMRMD:1;iRNA_m5C:0.999536711460946 5895 chr1 28975221 28975221 1 + G A rs143926421 28975234 + 28975214 28975254 41 GGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG GGCAGCTAGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG < 41bp 1 0.618993363853183 1 0.547265768051147 experiment 0.762013272293634 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975234 chr1:28975221 . . 0 8 hm5C_associated_SNPs_2665 0 0 1 2 0 unknown 1 0.50023164408923 0.905468463897706 0.99953671182154 hm5C_site_5895 DeepMRMD:0.905468463897706;iRNA_m5C:0.99953671182154 5896 chr1 28975221 28975221 1 + G A rs143926421 28975241 + 28975221 28975261 41 GGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATG AGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATG < 41bp 1 0.0489124082613244 1 0.0363006591796875 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975241 chr1:28975221 . . 0 1 hm5C_associated_SNPs_2666 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5896 DeepMRMD:1;iRNA_m5C:0.999536712157815 5897 chr1 28975234 28975234 1 + C A rs181924966 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GTATTTGGGCAGCTGGTGATCGTTGGTACCGGCGCCCTTTC < 41bp 1 0.624974340398568 1 0.350243091583252 experiment 0.750051319202864 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975234 . . 0 28 hm5C_associated_SNPs_2667 0 0 1 0 0 unknown 1 0.500231643921109 1 0.999536712157783 hm5C_site_5897 DeepMRMD:1;iRNA_m5C:0.999536712157783 5898 chr1 28975234 28975234 1 + C A rs181924966 28975241 + 28975221 28975261 41 GGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATG GGTGATCGTTGGTACCGGCGCCCTTTCTTTACTGTTATATG < 41bp 1 0.0490158909764047 1 0.0306264758110046 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975241 chr1:28975234 . . 0 14 hm5C_associated_SNPs_2668 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5898 DeepMRMD:1;iRNA_m5C:0.999536712157815 5899 chr1 28975234 28975234 1 + C A rs181924966 28975242 + 28975222 28975262 41 GTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATGT GTGATCGTTGGTACCGGCGCCCTTTCTTTACTGTTATATGT < 41bp 1 0.0151604970622452 1 0.0482748448848724 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975242 chr1:28975234 . . 0 13 hm5C_associated_SNPs_2669 0 0 1 0 0 unknown 1 0.500231984678198 1 0.999536030643604 hm5C_site_5899 DeepMRMD:1;iRNA_m5C:0.999536030643604 5900 chr1 28975234 28975234 1 + C A rs181924966 28975243 + 28975223 28975263 41 TGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATGTT TGATCGTTGGTACCGGCGCCCTTTCTTTACTGTTATATGTT < 41bp 1 0.0318492859548094 1 0.0662789344787598 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975243 chr1:28975234 . . 0 12 hm5C_associated_SNPs_2670 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5900 DeepMRMD:1;iRNA_m5C:0.999536712157815 5901 chr1 28975235 28975235 1 + C A rs184617414 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GTATTTGGGCAGCTGGTGATCGTTGGTCACGGCGCCCTTTC < 41bp 1 0.632127427825263 1 0.330434024333954 experiment 0.735745144349474 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975235 . . 0 29 hm5C_associated_SNPs_2671 0 0 1 0 0 unknown 1 0.500231643921047 1 0.999536712157907 hm5C_site_5901 DeepMRMD:1;iRNA_m5C:0.999536712157907 5902 chr1 28975235 28975235 1 + C A rs184617414 28975241 + 28975221 28975261 41 GGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATG GGTGATCGTTGGTCACGGCGCCCTTTCTTTACTGTTATATG < 41bp 1 0.0530850110165099 1 0.0556856393814087 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975241 chr1:28975235 . . 0 15 hm5C_associated_SNPs_2672 0 0 1 0 0 unknown 1 0.500231643921016 1 0.999536712157969 hm5C_site_5902 DeepMRMD:1;iRNA_m5C:0.999536712157969 5903 chr1 28975235 28975235 1 + C A rs184617414 28975242 + 28975222 28975262 41 GTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATGT GTGATCGTTGGTCACGGCGCCCTTTCTTTACTGTTATATGT < 41bp 1 0.0163460626435649 1 0.106142312288284 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975242 chr1:28975235 . . 0 14 hm5C_associated_SNPs_2673 0 0 1 0 0 unknown 1 0.500232389500361 1 0.999535220999278 hm5C_site_5903 DeepMRMD:1;iRNA_m5C:0.999535220999278 5904 chr1 28975235 28975235 1 + C A rs184617414 28975243 + 28975223 28975263 41 TGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATGTT TGATCGTTGGTCACGGCGCCCTTTCTTTACTGTTATATGTT < 41bp 1 0.0307199585791733 1 0.0550669729709625 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975243 chr1:28975235 . . 0 13 hm5C_associated_SNPs_2674 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5904 DeepMRMD:1;iRNA_m5C:0.999536712157815 5905 chr1 28975238 28975238 1 + G C rs117139663 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GTATTTGGGCAGCTGGTGATCGTTGGTCCCGCCGCCCTTTC < 41bp 1 0.617858921065183 1 0.464811444282532 experiment 0.764282157869633 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975238 . . 0 32 hm5C_associated_SNPs_2675 0 0 1 0 0 unknown 1 0.500231643923863 1 0.999536712152274 hm5C_site_5905 DeepMRMD:1;iRNA_m5C:0.999536712152274 5906 chr1 28975238 28975238 1 + G C rs117139663 28975234 + 28975214 28975254 41 GGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG GGCAGCTGGTGATCGTTGGTCCCGCCGCCCTTTCTTTACTG < 41bp 1 0.350918734727181 1 0.49946653842926 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975234 chr1:28975238 . . 0 25 hm5C_associated_SNPs_2676 0 0 1 0 0 unknown 1 0.500232782719572 1 0.999534434560855 hm5C_site_5906 DeepMRMD:1;iRNA_m5C:0.999534434560855 5907 chr1 28975238 28975238 1 + G C rs117139663 28975241 + 28975221 28975261 41 GGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATG GGTGATCGTTGGTCCCGCCGCCCTTTCTTTACTGTTATATG < 41bp 1 0.0534793808231012 1 0.0530894696712494 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975241 chr1:28975238 . . 0 18 hm5C_associated_SNPs_2677 0 0 1 0 0 unknown 1 0.50023164386594 1 0.99953671226812 hm5C_site_5907 DeepMRMD:1;iRNA_m5C:0.99953671226812 5908 chr1 28975238 28975238 1 + G C rs117139663 28975242 + 28975222 28975262 41 GTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATGT GTGATCGTTGGTCCCGCCGCCCTTTCTTTACTGTTATATGT < 41bp 1 0.0188267271973038 1 0.126201331615448 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975242 chr1:28975238 . . 0 17 hm5C_associated_SNPs_2678 0 0 1 0 0 unknown 1 0.500231678436102 1 0.999536643127796 hm5C_site_5908 DeepMRMD:1;iRNA_m5C:0.999536643127796 5909 chr1 28975238 28975238 1 + G C rs117139663 28975243 + 28975223 28975263 41 TGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATGTT TGATCGTTGGTCCCGCCGCCCTTTCTTTACTGTTATATGTT < 41bp 1 0.0291797427774953 1 0.0576359033584595 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975243 chr1:28975238 . . 0 16 hm5C_associated_SNPs_2679 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5909 DeepMRMD:1;iRNA_m5C:0.999536712157815 5910 chr1 28975243 28975243 1 + C A rs188285085 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCATTTC < 41bp 1 0.601812851236721 1 0.413892567157745 experiment 0.796374297526558 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975243 . . 0 37 hm5C_associated_SNPs_2680 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_5910 DeepMRMD:1;iRNA_m5C:0.999536712157815 5911 chr1 28975243 28975243 1 + C A rs188285085 28975234 + 28975214 28975254 41 GGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTG GGCAGCTGGTGATCGTTGGTCCCGGCGCCATTTCTTTACTG < 41bp 1 0.629493843324723 1 0.583902478218079 experiment 0.741012313350554 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975234 chr1:28975243 . . 0 30 hm5C_associated_SNPs_2681 0 0 1 0 0 unknown 1 0.50023164392507 0.832195043563842 0.99953671214986 hm5C_site_5911 DeepMRMD:0.832195043563842;iRNA_m5C:0.99953671214986 5912 chr1 28975243 28975243 1 + C A rs188285085 28975241 + 28975221 28975261 41 GGTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATG GGTGATCGTTGGTCCCGGCGCCATTTCTTTACTGTTATATG < 41bp 1 0.0444172926300673 1 0.067025750875473 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975241 chr1:28975243 . . 0 23 hm5C_associated_SNPs_2682 0 0 1 0 0 unknown 1 0.500231643922868 1 0.999536712154264 hm5C_site_5912 DeepMRMD:1;iRNA_m5C:0.999536712154264 5913 chr1 28975243 28975243 1 + C A rs188285085 28975242 + 28975222 28975262 41 GTGATCGTTGGTCCCGGCGCCCTTTCTTTACTGTTATATGT GTGATCGTTGGTCCCGGCGCCATTTCTTTACTGTTATATGT < 41bp 1 0.0495019354799631 1 0.18689826130867 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975242 chr1:28975243 . . 0 22 hm5C_associated_SNPs_2683 0 0 1 0 0 unknown 1 0.500232402447716 1 0.999535195104568 hm5C_site_5913 DeepMRMD:1;iRNA_m5C:0.999535195104568 5914 chr1 29069432 29069432 1 + C G rs16838382 29069427 + 29069407 29069447 41 TCTGCTGTTGGTAGCGGGTCCATTACTAGTAACATCGTGGC TCTGCTGTTGGTAGCGGGTCCATTAGTAGTAACATCGTGGC < 41bp 1 0.403447104134196 1 0.14900016784668 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069427 chr1:29069432 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_2684 0 0 1 0 0 Cytosol 1 0.500231644161164 1 0.999536711677672 hm5C_site_5914 DeepMRMD:1;iRNA_m5C:0.999536711677672 5915 chr1 29069443 29069443 1 + G A rs61787570 29069427 + 29069407 29069447 41 TCTGCTGTTGGTAGCGGGTCCATTACTAGTAACATCGTGGC TCTGCTGTTGGTAGCGGGTCCATTACTAGTAACATCATGGC < 41bp 1 0.264258537093286 1 0.191543191671371 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069427 chr1:29069443 nonsynonymous SNV 0.996 1 37 hm5C_associated_SNPs_2685 0 0 1 0 0 Cytosol 1 0.50023170390877 1 0.999536592182461 hm5C_site_5915 DeepMRMD:1;iRNA_m5C:0.999536592182461 5916 chr1 29444688 29444688 1 + C T rs140164668 29444702 + 29444682 29444722 41 CGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGC CGATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGC < 41bp 1 0.542813677873473 1 0.169943898916245 experiment 0.914372644253054 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPB41 ENSG00000159023 UTR3 Human protein_coding chr1:29444702 chr1:29444688 . . 0 7 hm5C_associated_SNPs_2686 0 0 0 0 0 Cytosol 1 0.50023164459751 1 0.99953671080498 hm5C_site_5916 DeepMRMD:1;iRNA_m5C:0.99953671080498 5917 chr1 29444705 29444705 1 + C T rs377366417 29444702 + 29444682 29444722 41 CGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGC CGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGC < 41bp 1 0.362695773691716 1 0.0850476920604706 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPB41 ENSG00000159023 UTR3 Human protein_coding chr1:29444702 chr1:29444705 . . 0 24 hm5C_associated_SNPs_2687 0 0 0 0 0 Cytosol 1 0.500233254346054 1 0.999533491307892 hm5C_site_5917 DeepMRMD:1;iRNA_m5C:0.999533491307892 5918 chr1 29444720 29444720 1 + A G rs471099 29444702 + 29444682 29444722 41 CGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGC CGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAGGC < 41bp 1 0.594329269730015 1 0.30896270275116 experiment 0.81134146053997 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPB41 ENSG00000159023 UTR3 Human protein_coding chr1:29444702 chr1:29444720 . . 0 39 hm5C_associated_SNPs_2689 0 0 0 0 0 Cytosol 1 0.500231837901317 1 0.999536324197366 hm5C_site_5918 DeepMRMD:1;iRNA_m5C:0.999536324197366 5919 chr1 29444720 29444720 1 + A G rs471099 29444739 + 29444719 29444759 41 AAGCAGTTCTCTTGCCTCAGCCTCCCAAGTAGCTGGGATGA AGGCAGTTCTCTTGCCTCAGCCTCCCAAGTAGCTGGGATGA < 41bp 1 0.107466611194282 1 0.190860569477081 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPB41 ENSG00000159023 UTR3 Human protein_coding chr1:29444739 chr1:29444720 . . 0 2 hm5C_associated_SNPs_2691 0 0 0 0 0 Cytosol 1 0.500231644757067 1 0.999536710485865 hm5C_site_5919 DeepMRMD:1;iRNA_m5C:0.999536710485865 5920 chr1 29444909 29444909 1 + G A rs537153855 29444902 + 29444882 29444922 41 GCTGGGATTACAGGTGTGAGCCACCACGCCCGGCCGATTTG GCTGGGATTACAGGTGTGAGCCACCACACCCGGCCGATTTG < 41bp 1 0.333041799766259 1 0.325904279947281 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPB41 ENSG00000159023 UTR3 Human protein_coding chr1:29444902 chr1:29444909 . . 0 28 hm5C_associated_SNPs_2692 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_5920 DeepMRMD:1;iRNA_m5C:0.999536712157815 5921 chr1 29444909 29444909 1 + G A rs537153855 29444905 + 29444885 29444925 41 GGGATTACAGGTGTGAGCCACCACGCCCGGCCGATTTGGGG GGGATTACAGGTGTGAGCCACCACACCCGGCCGATTTGGGG < 41bp 1 0.33345371086178 1 0.346640944480896 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPB41 ENSG00000159023 UTR3 Human protein_coding chr1:29444905 chr1:29444909 . . 0 25 hm5C_associated_SNPs_2694 0 0 1 0 0 Cytosol 1 0.500231643911313 1 0.999536712177375 hm5C_site_5921 DeepMRMD:1;iRNA_m5C:0.999536712177375 5922 chr1 29444912 29444912 1 + C T rs116358908 29444902 + 29444882 29444922 41 GCTGGGATTACAGGTGTGAGCCACCACGCCCGGCCGATTTG GCTGGGATTACAGGTGTGAGCCACCACGCCTGGCCGATTTG < 41bp 1 0.295668015681507 1 0.182088077068329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPB41 ENSG00000159023 UTR3 Human protein_coding chr1:29444902 chr1:29444912 . . 0 31 hm5C_associated_SNPs_2695 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_5922 DeepMRMD:1;iRNA_m5C:0.999536712157815 5923 chr1 29444912 29444912 1 + C T rs116358908 29444903 + 29444883 29444923 41 CTGGGATTACAGGTGTGAGCCACCACGCCCGGCCGATTTGG CTGGGATTACAGGTGTGAGCCACCACGCCTGGCCGATTTGG < 41bp 1 0.648739004708135 1 0.794226169586182 experiment 0.702521990583731 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPB41 ENSG00000159023 UTR3 Human protein_coding chr1:29444903 chr1:29444912 . . 0 30 hm5C_associated_SNPs_2696 0 0 1 0 0 Cytosol 1 0.50023164285756 0.411547660827636 0.999536714284879 hm5C_site_5923 DeepMRMD:0.411547660827636;iRNA_m5C:0.999536714284879 5924 chr1 29444912 29444912 1 + C T rs116358908 29444905 + 29444885 29444925 41 GGGATTACAGGTGTGAGCCACCACGCCCGGCCGATTTGGGG GGGATTACAGGTGTGAGCCACCACGCCTGGCCGATTTGGGG < 41bp 1 0.239294067320658 1 0.4383944272995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPB41 ENSG00000159023 UTR3 Human protein_coding chr1:29444905 chr1:29444912 . . 0 28 hm5C_associated_SNPs_2697 0 0 1 0 0 Cytosol 1 0.500231635764848 1 0.999536728470305 hm5C_site_5924 DeepMRMD:1;iRNA_m5C:0.999536728470305 5925 chr1 31883174 31883174 1 + A C rs114060678 31883189 + 31883169 31883209 41 ACTTCATCTCCTCAGTAGTCCCCTCAGATAGCTGGGGTAAA ACTTCCTCTCCTCAGTAGTCCCCTCAGATAGCTGGGGTAAA < 41bp 1 0.0059938794003547 1 0.0530638098716736 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SERINC2 ENSG00000168528 UTR5 Human protein_coding chr1:31883189 chr1:31883174 . . 0 6 hm5C_associated_SNPs_2698 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5925 DeepMRMD:1;iRNA_m5C:0.999536712157815 5926 chr1 31883192 31883192 1 + T A rs184916722 31883189 + 31883169 31883209 41 ACTTCATCTCCTCAGTAGTCCCCTCAGATAGCTGGGGTAAA ACTTCATCTCCTCAGTAGTCCCCACAGATAGCTGGGGTAAA < 41bp 1 0.0110733671087771 1 0.0905274748802185 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SERINC2 ENSG00000168528 UTR5 Human protein_coding chr1:31883189 chr1:31883192 . . 0 24 hm5C_associated_SNPs_2699 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_5926 DeepMRMD:1;iRNA_m5C:0.999536712157815 5927 chr1 31898639 31898639 1 + C T rs35976845 31898654 + 31898634 31898674 41 TTCGGCGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT TTCGGTGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT < 41bp 1 0.149295501212511 1 0.507026076316833 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31898654 chr1:31898639 synonymous SNV . 0 6 hm5C_associated_SNPs_2700 0 0 0 0 1 Endoplasmic reticulum 1 0.500231623531281 0.985947847366334 0.999536752937437 hm5C_site_5927 DeepMRMD:0.985947847366334;iRNA_m5C:0.999536752937437 5928 chr1 31898640 31898640 1 + G A rs148798555 31898654 + 31898634 31898674 41 TTCGGCGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT TTCGGCATCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT < 41bp 1 0.147250376355672 1 0.283071219921112 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31898654 chr1:31898640 nonsynonymous SNV 0.957 2 7 hm5C_associated_SNPs_2701 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392441 1 0.99953671215118 hm5C_site_5928 DeepMRMD:1;iRNA_m5C:0.99953671215118 5929 chr1 32573672 32573672 1 + A G rs377161233 32573677 + 32573657 32573697 41 ATATTGTCTACTGAAAGCTGCCGCTGAAGCTGCCGCCGTTG ATATTGTCTACTGAAGGCTGCCGCTGAAGCTGCCGCCGTTG < 41bp 1 0.163855226503547 1 0.0748861730098724 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KPNA6 ENSG00000025800 UTR5 Human protein_coding chr1:32573677 chr1:32573672 . . 0 16 hm5C_associated_SNPs_2702 0 0 1 0 1 Cytosol 1 0.500231667738888 1 0.999536664522225 hm5C_site_5929 DeepMRMD:1;iRNA_m5C:0.999536664522225 5930 chr1 32637810 32637810 1 + C T rs542125438 32637790 + 32637770 32637810 41 TGCTTCCTCGCTCAGGAGGCCTGAGCTTGGTCCTTTTCCTC TGCTTCCTCGCTCAGGAGGCCTGAGCTTGGTCCTTTTCCTT < 41bp 1 0.323324322432883 1 0.0929969847202301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KPNA6 ENSG00000250135 ncRNA_intronic Human sense_intronic chr1:32637790 chr1:32637810 . . 0 41 hm5C_associated_SNPs_2703 0 0 1 0 0 Cytosol 1 0.500231643883088 1 0.999536712233825 hm5C_site_5930 DeepMRMD:1;iRNA_m5C:0.999536712233825 5931 chr1 32640633 32640633 1 + G A rs1076753 32640618 + 32640598 32640638 41 GCTGGGATCCATGTAGTGGGCACTAGCTGCTCTTTGGCCAA GCTGGGATCCATGTAGTGGGCACTAGCTGCTCTTTAGCCAA < 41bp 1 0.599507824704194 1 0.346124142408371 experiment 0.800984350591613 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KPNA6 ENSG00000250135 ncRNA_intronic Human sense_intronic chr1:32640618 chr1:32640633 . . 0 36 hm5C_associated_SNPs_2704 0 0 1 0 0 Cytosol 1 0.500231644638985 1 0.99953671072203 hm5C_site_5931 DeepMRMD:1;iRNA_m5C:0.99953671072203 5932 chr1 32647150 32647150 1 + A C rs530562335 32647149 + 32647129 32647169 41 AGACCGAGACCATCGAAGGCCACAGGAGAAGAAAAAAGCCA AGACCGAGACCATCGAAGGCCCCAGGAGAAGAAAAAAGCCA < 41bp 1 0.20149683640058 1 0.403977394104004 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TXLNA ENSG00000084652 CDS Human protein_coding chr1:32647149 chr1:32647150 synonymous SNV . 0 22 hm5C_associated_SNPs_2705 0 0 1 0 1 Nucleus 1 0.500231642460672 1 0.999536715078656 hm5C_site_5932 DeepMRMD:1;iRNA_m5C:0.999536715078656 5933 chr1 33322974 33322974 1 + G A rs564103922 33322954 + 33322934 33322974 41 CGGAGTTTCGCTGTTGTTGCCCAGGCTGGAGTGCAATGGCG CGGAGTTTCGCTGTTGTTGCCCAGGCTGGAGTGCAATGGCA < 41bp 1 0.548365852516926 1 0.104910999536514 experiment 0.903268294966148 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient S100PBP ENSG00000116497 UTR3 Human protein_coding chr1:33322954 chr1:33322974 . . 0 41 hm5C_associated_SNPs_2706 0 0 1 0 0 membrane 1 0.500231928222238 1 0.999536143555525 hm5C_site_5933 DeepMRMD:1;iRNA_m5C:0.999536143555525 5934 chr1 33322974 33322974 1 + G A rs564103922 33322955 + 33322935 33322975 41 GGAGTTTCGCTGTTGTTGCCCAGGCTGGAGTGCAATGGCGT GGAGTTTCGCTGTTGTTGCCCAGGCTGGAGTGCAATGGCAT < 41bp 1 0.507888585630475 1 0.378653019666672 experiment 0.98422282873905 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient S100PBP ENSG00000116497 UTR3 Human protein_coding chr1:33322955 chr1:33322974 . . 0 40 hm5C_associated_SNPs_2707 0 0 1 0 0 membrane 1 0.50023164382388 1 0.99953671235224 hm5C_site_5934 DeepMRMD:1;iRNA_m5C:0.99953671235224 5935 chr1 33322974 33322974 1 + G A rs564103922 33322967 + 33322947 33322987 41 TTGTTGCCCAGGCTGGAGTGCAATGGCGTATCTCCACTCAC TTGTTGCCCAGGCTGGAGTGCAATGGCATATCTCCACTCAC < 41bp 1 0.511574462885828 1 0.0833577215671539 experiment 0.976851074228344 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient S100PBP ENSG00000116497 UTR3 Human protein_coding chr1:33322967 chr1:33322974 . . 0 28 hm5C_associated_SNPs_2708 0 0 1 0 0 membrane 1 0.500231643921019 1 0.999536712157962 hm5C_site_5935 DeepMRMD:1;iRNA_m5C:0.999536712157962 5936 chr1 33745924 33745924 1 + C T rs140453245 33745921 + 33745901 33745941 41 ATCAAGACAATCCAGGGCCACGGCCTGCTTGGCCCCCCCAA ATCAAGACAATCCAGGGCCACGGTCTGCTTGGCCCCCCCAA < 41bp 1 0.299636163561031 1 0.5082106590271 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33745921 chr1:33745924 synonymous SNV . 0 24 hm5C_associated_SNPs_2709 0 0 1 0 0 Nucleus 1 0.500231643907794 0.9835786819458 0.999536712184411 hm5C_site_5936 DeepMRMD:0.9835786819458;iRNA_m5C:0.999536712184411 5937 chr1 33745937 33745937 1 + C G rs138130115 33745921 + 33745901 33745941 41 ATCAAGACAATCCAGGGCCACGGCCTGCTTGGCCCCCCCAA ATCAAGACAATCCAGGGCCACGGCCTGCTTGGCCCCGCCAA < 41bp 1 0.49375714902996 1 0.575281023979187 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33745921 chr1:33745937 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_2710 0 0 0 0 0 Nucleus 1 0.500231643884513 0.849437952041626 0.999536712230974 hm5C_site_5937 DeepMRMD:0.849437952041626;iRNA_m5C:0.999536712230974 5938 chr1 33957267 33957267 1 + T C rs192219497 33957260 + 33957240 33957280 41 ATGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCA ATGTTGAGTCTACCCAGGGGCCCAGGACTGCAGGGGCCCCA < 41bp 1 0.262725652073385 1 0.0673602819442749 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957260 chr1:33957267 nonsynonymous SNV 0.818 0 28 hm5C_associated_SNPs_2711 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5938 DeepMRMD:1;iRNA_m5C:0.999536712157815 5939 chr1 33957267 33957267 1 + T C rs192219497 33957261 + 33957241 33957281 41 TGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCAG TGTTGAGTCTACCCAGGGGCCCAGGACTGCAGGGGCCCCAG < 41bp 1 0.522042941161691 1 0.367760002613068 experiment 0.955914117676619 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957261 chr1:33957267 nonsynonymous SNV 0.818 0 27 hm5C_associated_SNPs_2712 0 0 0 0 1 exosome 1 0.500231643927569 1 0.999536712144862 hm5C_site_5939 DeepMRMD:1;iRNA_m5C:0.999536712144862 5940 chr1 33957267 33957267 1 + T C rs192219497 33957276 + 33957256 33957296 41 GGGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTC GGGGCCCAGGACTGCAGGGGCCCCAGCTCTGTTCCAGAGTC < 41bp 1 0.484500327569894 1 0.258573114871979 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957276 chr1:33957267 nonsynonymous SNV 0.818 0 12 hm5C_associated_SNPs_2713 0 0 0 0 1 exosome 1 0.500231643918934 1 0.999536712162133 hm5C_site_5940 DeepMRMD:1;iRNA_m5C:0.999536712162133 5941 chr1 33957267 33957267 1 + T C rs192219497 33957277 + 33957257 33957297 41 GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCG GGGCCCAGGACTGCAGGGGCCCCAGCTCTGTTCCAGAGTCG < 41bp 1 0.225870501479746 1 0.0984577238559723 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957277 chr1:33957267 nonsynonymous SNV 0.818 0 11 hm5C_associated_SNPs_2714 0 0 0 0 1 exosome 1 0.500231643933394 1 0.999536712133211 hm5C_site_5941 DeepMRMD:1;iRNA_m5C:0.999536712133211 5942 chr1 33957267 33957267 1 + T C rs192219497 33957278 + 33957258 33957298 41 GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGT GGCCCAGGACTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGT < 41bp 1 0.104746827273742 1 0.176896035671234 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957278 chr1:33957267 nonsynonymous SNV 0.818 0 10 hm5C_associated_SNPs_2715 0 0 0 0 1 exosome 1 0.500231643920817 1 0.999536712158366 hm5C_site_5942 DeepMRMD:1;iRNA_m5C:0.999536712158366 5943 chr1 33957267 33957267 1 + T C rs192219497 33957279 + 33957259 33957299 41 GCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTA GCCCAGGACTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTA < 41bp 1 0.413199873445355 1 0.141028553247452 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957279 chr1:33957267 nonsynonymous SNV 0.818 0 9 hm5C_associated_SNPs_2716 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5943 DeepMRMD:1;iRNA_m5C:0.999536712157815 5944 chr1 35565977 35565977 1 + C T rs147684247 35565988 + 35565968 35566008 41 ATCCCAGCACTTTGGGAGGCCAAGGCAGGAGAATCACTGGA ATCCCAGCATTTTGGGAGGCCAAGGCAGGAGAATCACTGGA < 41bp 1 0.540136163217296 1 0.624806523323059 experiment 0.919727673565409 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZMYM1 ENSG00000197056 intronic Human protein_coding chr1:35565988 chr1:35565977 . . 0 10 hm5C_associated_SNPs_2717 0 0 0 0 0 Cytosol 1 0.500231643921103 0.750386953353882 0.999536712157794 hm5C_site_5944 DeepMRMD:0.750386953353882;iRNA_m5C:0.999536712157794 5945 chr1 35824639 35824639 1 + C A rs147284119 35824625 + 35824605 35824645 41 AATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATG AATGCCGAATCAAACAGGATCTGAAAATTCATTGATGGATG < 41bp 1 0.403673000831424 1 0.298425525426865 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35824625 chr1:35824639 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_2718 0 0 1 0 0 Cytosol 1 0.500231643907986 1 0.999536712184027 hm5C_site_5945 DeepMRMD:1;iRNA_m5C:0.999536712184027 5946 chr1 36026181 36026181 1 + G A rs147068711 36026179 + 36026159 36026199 41 TCCTCACAGCCCGGGGGGACCCGGACGATGCTGCCCGCCGC TCCTCACAGCCCGGGGGGACCCAGACGATGCTGCCCGCCGC < 41bp 1 0.63362953240133 1 0.725995898246765 experiment 0.73274093519734 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36026179 chr1:36026181 synonymous SNV . 0 23 hm5C_associated_SNPs_2719 0 0 1 0 0 Endoplasmic reticulum 1 0.500231642707944 0.54800820350647 0.999536714584113 hm5C_site_5946 DeepMRMD:0.54800820350647;iRNA_m5C:0.999536714584113 5947 chr1 36032289 36032289 1 + C G rs575330822 36032269 + 36032249 36032289 41 CACACACACACACACACACACACACACACACACTCTTGATC CACACACACACACACACACACACACACACACACTCTTGATG < 41bp 1 0.289974165630603 1 0.0716461539268494 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCDN ENSG00000020129 UTR3 Human protein_coding chr1:36032269 chr1:36032289 . . 0 41 hm5C_associated_SNPs_2720 0 0 1 1 0 Endoplasmic reticulum 1 0.535149096113696 1 0.929701807772608 hm5C_site_5947 DeepMRMD:1;iRNA_m5C:0.929701807772608 5948 chr1 36032289 36032289 1 + C G rs575330822 36032271 + 36032251 36032291 41 CACACACACACACACACACACACACACACACTCTTGATCCC CACACACACACACACACACACACACACACACTCTTGATGCC < 41bp 1 0.319841293731875 1 0.158643484115601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCDN ENSG00000020129 UTR3 Human protein_coding chr1:36032271 chr1:36032289 . . 0 39 hm5C_associated_SNPs_2721 0 0 1 1 0 Endoplasmic reticulum 1 0.500564802986583 1 0.998870394026834 hm5C_site_5948 DeepMRMD:1;iRNA_m5C:0.998870394026834 5949 chr1 36032289 36032289 1 + C G rs575330822 36032273 + 36032253 36032293 41 CACACACACACACACACACACACACACACTCTTGATCCCTT CACACACACACACACACACACACACACACTCTTGATGCCTT < 41bp 1 0.31818005499136 1 0.162828147411346 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCDN ENSG00000020129 UTR3 Human protein_coding chr1:36032273 chr1:36032289 . . 0 37 hm5C_associated_SNPs_2722 0 0 1 1 0 Endoplasmic reticulum 1 0.500211978163314 1 0.999576043673372 hm5C_site_5949 DeepMRMD:1;iRNA_m5C:0.999576043673372 5950 chr1 36032289 36032289 1 + C G rs575330822 36032275 + 36032255 36032295 41 CACACACACACACACACACACACACACTCTTGATCCCTTGC CACACACACACACACACACACACACACTCTTGATGCCTTGC < 41bp 1 0.271771609816997 1 0.0630843937397003 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCDN ENSG00000020129 UTR3 Human protein_coding chr1:36032275 chr1:36032289 . . 0 35 hm5C_associated_SNPs_2723 0 0 1 1 0 Endoplasmic reticulum 1 0.500222096697161 1 0.999555806605678 hm5C_site_5950 DeepMRMD:1;iRNA_m5C:0.999555806605678 5951 chr1 36032289 36032289 1 + C G rs575330822 36032277 + 36032257 36032297 41 CACACACACACACACACACACACACTCTTGATCCCTTGCTT CACACACACACACACACACACACACTCTTGATGCCTTGCTT < 41bp 1 0.331437975900975 1 0.0536175668239594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCDN ENSG00000020129 UTR3 Human protein_coding chr1:36032277 chr1:36032289 . . 0 33 hm5C_associated_SNPs_2724 0 0 1 1 0 Endoplasmic reticulum 1 0.500231449204979 1 0.999537101590043 hm5C_site_5951 DeepMRMD:1;iRNA_m5C:0.999537101590043 5952 chr1 36358832 36358832 1 + G A rs146336392 36358839 + 36358819 36358859 41 CTGTTCCCTTGGAGTCTGTGCAAGCCCTGGATGTGGCCATG CTGTTCCCTTGGAATCTGTGCAAGCCCTGGATGTGGCCATG < 41bp 1 0.258975795872783 1 0.260308623313904 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGO1 ENSG00000092847 CDS Human protein_coding chr1:36358839 chr1:36358832 synonymous SNV . 0 14 hm5C_associated_SNPs_2727 0 0 1 0 1 Cytosol 1 0.500231643919875 1 0.999536712160249 hm5C_site_5952 DeepMRMD:1;iRNA_m5C:0.999536712160249 5953 chr1 36643105 36643105 1 + T A rs147343054 36643097 + 36643077 36643117 41 ATGATGCCACTGCACTCCAGCCTGGGGGTCAGCCAGATTCT ATGATGCCACTGCACTCCAGCCTGGGGGACAGCCAGATTCT < 41bp 1 0.0418329364471822 1 0.234337210655212 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAP7D1 ENSG00000116871 UTR5 Human protein_coding chr1:36643097 chr1:36643105 . . 0 29 hm5C_associated_SNPs_2729 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5953 DeepMRMD:1;iRNA_m5C:0.999536712157815 5954 chr1 36646029 36646029 1 + G A rs186075701 36646039 + 36646019 36646059 41 CTCTTTGGCCGGAGCCAGATCTGCCCCTCAGTGCATTCGTG CTCTTTGGCCAGAGCCAGATCTGCCCCTCAGTGCATTCGTG < 41bp 1 0.252691951142259 1 0.0758446753025055 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP7D1 ENSG00000116871 UTR3 Human protein_coding chr1:36646039 chr1:36646029 . . 0 11 hm5C_associated_SNPs_2730 0 0 1 1 0 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_5954 DeepMRMD:1;iRNA_m5C:0.999536712157808 5955 chr1 36646049 36646049 1 + G A rs145904903 36646039 + 36646019 36646059 41 CTCTTTGGCCGGAGCCAGATCTGCCCCTCAGTGCATTCGTG CTCTTTGGCCGGAGCCAGATCTGCCCCTCAATGCATTCGTG < 41bp 1 0.298312243718298 1 0.117104947566986 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP7D1 ENSG00000116871 UTR3 Human protein_coding chr1:36646039 chr1:36646049 . . 0 31 hm5C_associated_SNPs_2731 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5955 DeepMRMD:1;iRNA_m5C:0.999536712157815 5956 chr1 37947336 37947336 1 + G A rs16824179 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATCATGGTTTCCAACGACACATACCGTGACCTCCAAGG < 41bp 1 0.282405449995412 1 0.260320603847504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947336 nonsynonymous SNV 0.847 4 7 hm5C_associated_SNPs_2732 0 0 0 0 0 Nucleus 1 0.50023164392067 1 0.99953671215866 hm5C_site_5956 DeepMRMD:1;iRNA_m5C:0.99953671215866 5957 chr1 37947336 37947336 1 + G A rs16824179 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATCATGGTTTCCAACGACACATACCGTGACCTCCAAGGCG < 41bp 1 0.134616069385709 1 0.0966600477695465 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947336 nonsynonymous SNV 0.847 4 5 hm5C_associated_SNPs_2733 0 0 0 0 0 Nucleus 1 0.500231643606267 1 0.999536712787466 hm5C_site_5957 DeepMRMD:1;iRNA_m5C:0.999536712787466 5958 chr1 37948071 37948071 1 + G A rs142536124 37948073 + 37948053 37948093 41 CCCACTGGGCCGGCACGGGCCCAGCCTGGACAACTTCCTGC CCCACTGGGCCGGCACGGACCCAGCCTGGACAACTTCCTGC < 41bp 1 0.196726784997283 1 0.0863814055919647 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948073 chr1:37948071 nonsynonymous SNV 0.984 0 19 hm5C_associated_SNPs_2734 0 0 1 0 2 Nucleus 1 0.500240713402787 1 0.999518573194425 hm5C_site_5958 DeepMRMD:1;iRNA_m5C:0.999518573194425 5959 chr1 37948071 37948071 1 + G A rs142536124 37948074 + 37948054 37948094 41 CCACTGGGCCGGCACGGGCCCAGCCTGGACAACTTCCTGCG CCACTGGGCCGGCACGGACCCAGCCTGGACAACTTCCTGCG < 41bp 1 0.449683861923343 1 0.329294979572296 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948074 chr1:37948071 nonsynonymous SNV 0.984 0 18 hm5C_associated_SNPs_2735 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_5959 DeepMRMD:1;iRNA_m5C:0.999536712157815 5960 chr1 38174366 38174366 1 + G T rs7526362 38174379 + 38174359 38174399 41 CCTGCCTGCAGTTGAGGGGGCGAAGAAGAACCCTGTGTTCT CCTGCCTTCAGTTGAGGGGGCGAAGAAGAACCCTGTGTTCT < 41bp 1 0.644997958709121 1 0.581405460834503 experiment 0.710004082581757 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDCA8 ENSG00000134690 UTR3 Human protein_coding chr1:38174379 chr1:38174366 . . 0 8 hm5C_associated_SNPs_2736 0 0 1 0 0 Ribosome 1 0.500231643925136 0.837189078330994 0.999536712149729 hm5C_site_5960 DeepMRMD:0.837189078330994;iRNA_m5C:0.999536712149729 5961 chr1 38174380 38174380 1 + G A rs72659465 38174379 + 38174359 38174399 41 CCTGCCTGCAGTTGAGGGGGCGAAGAAGAACCCTGTGTTCT CCTGCCTGCAGTTGAGGGGGCAAAGAAGAACCCTGTGTTCT < 41bp 1 0.650104010091341 1 0.433952540159225 experiment 0.699791979817318 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDCA8 ENSG00000134690 UTR3 Human protein_coding chr1:38174379 chr1:38174380 . . 0 22 hm5C_associated_SNPs_2738 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5961 DeepMRMD:1;iRNA_m5C:0.999536712157815 5962 chr1 38174583 38174583 1 + A C rs141712543 38174592 + 38174572 38174612 41 GCAGTGACCTCAGTAGGGAACATGTCCGTCTACCCTCTCGC GCAGTGACCTCCGTAGGGAACATGTCCGTCTACCCTCTCGC < 41bp 1 0.568921585554848 1 0.172007203102112 experiment 0.862156828890305 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDCA8 ENSG00000134690 UTR3 Human protein_coding chr1:38174592 chr1:38174583 . . 0 12 hm5C_associated_SNPs_2739 0 0 1 1 0 Ribosome 1 0.500232012381261 1 0.999535975237478 hm5C_site_5962 DeepMRMD:1;iRNA_m5C:0.999535975237478 5963 chr1 38490205 38490205 1 + G C rs374951327 38490194 + 38490174 38490214 41 ACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTA ACGCCATTCTCCTGCCTCAGCCTCCCGAGTACCTGGGACTA < 41bp 1 0.259262155951983 1 0.154703080654144 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP11 ENSG00000183520 UTR3 Human protein_coding chr1:38490194 chr1:38490205 . . 0 32 hm5C_associated_SNPs_2740 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5963 DeepMRMD:1;iRNA_m5C:0.999536712157815 5964 chr1 38490205 38490205 1 + G C rs374951327 38490195 + 38490175 38490215 41 CGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTAC CGCCATTCTCCTGCCTCAGCCTCCCGAGTACCTGGGACTAC < 41bp 1 0.616891289206952 1 0.253339171409607 experiment 0.766217421586095 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UTP11 ENSG00000183520 UTR3 Human protein_coding chr1:38490195 chr1:38490205 . . 0 31 hm5C_associated_SNPs_2741 0 0 0 0 0 Ribosome 1 0.500230529070144 1 0.999538941859712 hm5C_site_5964 DeepMRMD:1;iRNA_m5C:0.999538941859712 5965 chr1 38490205 38490205 1 + G C rs374951327 38490198 + 38490178 38490218 41 CATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGG CATTCTCCTGCCTCAGCCTCCCGAGTACCTGGGACTACAGG < 41bp 1 0.559330045814669 1 0.502294063568115 experiment 0.881339908370661 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UTP11 ENSG00000183520 UTR3 Human protein_coding chr1:38490198 chr1:38490205 . . 0 28 hm5C_associated_SNPs_2742 0 0 0 0 0 Ribosome 1 0.500231643921092 0.99541187286377 0.999536712157815 hm5C_site_5965 DeepMRMD:0.99541187286377;iRNA_m5C:0.999536712157815 5966 chr1 38490205 38490205 1 + G C rs374951327 38490219 + 38490199 38490239 41 CGAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCTGGCT CGAGTACCTGGGACTACAGGCGCCCGCCACCGCGCCTGGCT < 41bp 1 0.615300518229 1 0.726949691772461 experiment 0.769398963542 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UTP11 ENSG00000183520 UTR3 Human protein_coding chr1:38490219 chr1:38490205 . . 0 7 hm5C_associated_SNPs_2743 0 0 0 0 0 Ribosome 1 0.500231643921092 0.546100616455078 0.999536712157815 hm5C_site_5966 DeepMRMD:0.546100616455078;iRNA_m5C:0.999536712157815 5967 chr1 38490205 38490205 1 + G C rs374951327 38490225 + 38490205 38490245 41 GCTGGGACTACAGGCGCCCGCCACCGCGCCTGGCTAATTTT CCTGGGACTACAGGCGCCCGCCACCGCGCCTGGCTAATTTT < 41bp 1 0.444812275203416 1 0.130084484815598 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UTP11 ENSG00000183520 UTR3 Human protein_coding chr1:38490225 chr1:38490205 . . 0 1 hm5C_associated_SNPs_2744 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5967 DeepMRMD:1;iRNA_m5C:0.999536712157815 5968 chr1 38490235 38490235 1 + T A rs10749870 38490219 + 38490199 38490239 41 CGAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCTGGCT CGAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCAGGCT < 41bp 1 0.646812909520509 1 0.644641876220703 experiment 0.706374180958983 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UTP11 ENSG00000183520 UTR3 Human protein_coding chr1:38490219 chr1:38490235 . . 0 37 hm5C_associated_SNPs_2745 0 0 0 0 0 Ribosome 1 0.500231643921092 0.710716247558594 0.999536712157816 hm5C_site_5968 DeepMRMD:0.710716247558594;iRNA_m5C:0.999536712157816 5969 chr1 38490235 38490235 1 + T A rs10749870 38490225 + 38490205 38490245 41 GCTGGGACTACAGGCGCCCGCCACCGCGCCTGGCTAATTTT GCTGGGACTACAGGCGCCCGCCACCGCGCCAGGCTAATTTT < 41bp 1 0.536948577885282 1 0.184061229228973 experiment 0.926102844229436 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UTP11 ENSG00000183520 UTR3 Human protein_coding chr1:38490225 chr1:38490235 . . 0 31 hm5C_associated_SNPs_2746 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5969 DeepMRMD:1;iRNA_m5C:0.999536712157815 5970 chr1 38490235 38490235 1 + T A rs10749870 38490226 + 38490206 38490246 41 CTGGGACTACAGGCGCCCGCCACCGCGCCTGGCTAATTTTT CTGGGACTACAGGCGCCCGCCACCGCGCCAGGCTAATTTTT < 41bp 1 0.647142258822555 1 0.428244173526764 experiment 0.705715482354889 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UTP11 ENSG00000183520 UTR3 Human protein_coding chr1:38490226 chr1:38490235 . . 0 30 hm5C_associated_SNPs_2747 0 0 0 0 0 Ribosome 1 0.500231643921091 1 0.999536712157819 hm5C_site_5970 DeepMRMD:1;iRNA_m5C:0.999536712157819 5971 chr1 38490235 38490235 1 + T A rs10749870 38490228 + 38490208 38490248 41 GGGACTACAGGCGCCCGCCACCGCGCCTGGCTAATTTTTTT GGGACTACAGGCGCCCGCCACCGCGCCAGGCTAATTTTTTT < 41bp 1 0.585629817336962 1 0.360190033912659 experiment 0.828740365326077 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP11 ENSG00000183520 UTR3 Human protein_coding chr1:38490228 chr1:38490235 . . 0 28 hm5C_associated_SNPs_2748 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_5971 DeepMRMD:1;iRNA_m5C:0.999536712157814 5972 chr1 38490235 38490235 1 + T A rs10749870 38490229 + 38490209 38490249 41 GGACTACAGGCGCCCGCCACCGCGCCTGGCTAATTTTTTTT GGACTACAGGCGCCCGCCACCGCGCCAGGCTAATTTTTTTT < 41bp 1 0.668736275578289 1 0.796453654766083 experiment 0.662527448843421 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP11 ENSG00000183520 UTR3 Human protein_coding chr1:38490229 chr1:38490235 . . 0 27 hm5C_associated_SNPs_2749 0 0 0 0 0 Ribosome 1 0.500231643921095 0.407092690467834 0.999536712157811 hm5C_site_5972 DeepMRMD:0.407092690467834;iRNA_m5C:0.999536712157811 5973 chr1 38490235 38490235 1 + T A rs10749870 38490233 + 38490213 38490253 41 TACAGGCGCCCGCCACCGCGCCTGGCTAATTTTTTTTTGTA TACAGGCGCCCGCCACCGCGCCAGGCTAATTTTTTTTTGTA < 41bp 1 0.526092172649947 1 0.460697591304779 experiment 0.947815654700106 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP11 ENSG00000183520 UTR3 Human protein_coding chr1:38490233 chr1:38490235 . . 0 23 hm5C_associated_SNPs_2750 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5973 DeepMRMD:1;iRNA_m5C:0.999536712157815 5974 chr1 38490235 38490235 1 + T A rs10749870 38490234 + 38490214 38490254 41 ACAGGCGCCCGCCACCGCGCCTGGCTAATTTTTTTTTGTAT ACAGGCGCCCGCCACCGCGCCAGGCTAATTTTTTTTTGTAT < 41bp 1 0.653125523573466 1 0.460454225540161 experiment 0.693748952853068 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP11 ENSG00000183520 UTR3 Human protein_coding chr1:38490234 chr1:38490235 . . 0 22 hm5C_associated_SNPs_2751 0 0 0 0 0 Ribosome 1 0.500305271421901 1 0.999389457156197 hm5C_site_5974 DeepMRMD:1;iRNA_m5C:0.999389457156197 5975 chr1 39776654 39776654 1 + A G rs146950475 39776662 + 39776642 39776682 41 GGACAATGCATTAAGGATTGCAGAGCAAGAGGTAAGCCCTA GGACAATGCATTGAGGATTGCAGAGCAAGAGGTAAGCCCTA < 41bp 1 0.247485878717214 1 0.36653533577919 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39776662 chr1:39776654 synonymous SNV . 0 13 hm5C_associated_SNPs_2752 0 0 1 0 1 Endoplasmic reticulum 1 0.500231593415338 1 0.999536813169325 hm5C_site_5975 DeepMRMD:1;iRNA_m5C:0.999536813169325 5976 chr1 39823343 39823343 1 + C G rs192201614 39823346 + 39823326 39823366 41 AACATGCATAAGGGAGGCAGCAGCCCCGAGACCCTTCCCTC AACATGCATAAGGGAGGGAGCAGCCCCGAGACCCTTCCCTC < 41bp 1 0.16517498924261 1 0.580478191375732 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39823346 chr1:39823343 synonymous SNV . 0 18 hm5C_associated_SNPs_2753 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.839043617248536 0.999536712157815 hm5C_site_5976 DeepMRMD:0.839043617248536;iRNA_m5C:0.999536712157815 5977 chr1 39875227 39875227 1 + G T rs190463034 39875233 + 39875213 39875253 41 CGAAGGCCTGGCGCGGGGCTCCGCTCGCCTTGTTTTGCAGC CGAAGGCCTGGCGCTGGGCTCCGCTCGCCTTGTTTTGCAGC < 41bp 1 0.0499152968056493 1 0.140696376562119 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIAA0754 ENSG00000127603 intronic Human protein_coding chr1:39875233 chr1:39875227 . . 0 15 hm5C_associated_SNPs_2754 0 0 1 0 0 Nucleus 1 0.500231643921057 1 0.999536712157886 hm5C_site_5977 DeepMRMD:1;iRNA_m5C:0.999536712157886 5978 chr1 39898283 39898283 1 + G A rs144615050 39898302 + 39898282 39898322 41 CGCCTGGAACAGGACCAGACCACAGCTCAGCTTCAGGTACA CACCTGGAACAGGACCAGACCACAGCTCAGCTTCAGGTACA < 41bp 1 0.242826226112944 1 0.185109406709671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39898302 chr1:39898283 nonsynonymous SNV 0.997 4 2 hm5C_associated_SNPs_2755 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643912646 1 0.999536712174707 hm5C_site_5978 DeepMRMD:1;iRNA_m5C:0.999536712174707 5979 chr1 39910477 39910477 1 + T C rs143526587 39910457 + 39910437 39910477 41 AGACAGAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAT AGACAGAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAC < 41bp 1 0.0689504208108562 1 0.0614574253559113 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910457 chr1:39910477 synonymous SNV . 0 41 hm5C_associated_SNPs_2756 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645176997 1 0.999536709646005 hm5C_site_5979 DeepMRMD:1;iRNA_m5C:0.999536709646005 5980 chr1 39910477 39910477 1 + T C rs143526587 39910466 + 39910446 39910486 41 AGAGTGTAGCACTTTTGGAGCAGAAGTGGCATGTGGTCAGC AGAGTGTAGCACTTTTGGAGCAGAAGTGGCACGTGGTCAGC < 41bp 1 0.256766261062746 1 0.240866839885712 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910466 chr1:39910477 synonymous SNV . 0 32 hm5C_associated_SNPs_2757 0 0 1 0 1 Endoplasmic reticulum 1 0.500232968746896 1 0.999534062506207 hm5C_site_5980 DeepMRMD:1;iRNA_m5C:0.999534062506207 5981 chr1 39910477 39910477 1 + T C rs143526587 39910475 + 39910455 39910495 41 CACTTTTGGAGCAGAAGTGGCATGTGGTCAGCAGTAAGATG CACTTTTGGAGCAGAAGTGGCACGTGGTCAGCAGTAAGATG < 41bp 1 0.179822150358968 1 0.300908386707306 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910475 chr1:39910477 synonymous SNV . 0 23 hm5C_associated_SNPs_2758 0 0 1 0 1 Endoplasmic reticulum 1 0.50020829365386 1 0.99958341269228 hm5C_site_5981 DeepMRMD:1;iRNA_m5C:0.99958341269228 5982 chr1 39910477 39910477 1 + T C rs143526587 39910486 + 39910466 39910506 41 CAGAAGTGGCATGTGGTCAGCAGTAAGATGGAAGAAAGAAA CAGAAGTGGCACGTGGTCAGCAGTAAGATGGAAGAAAGAAA < 41bp 1 0.127666440995728 1 0.475773245096207 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910486 chr1:39910477 synonymous SNV . 0 12 hm5C_associated_SNPs_2759 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645674039 1 0.999536708651922 hm5C_site_5982 DeepMRMD:1;iRNA_m5C:0.999536708651922 5983 chr1 40533358 40533358 1 + G A rs34763876 40533350 + 40533330 40533370 41 AGTCTGCTTCCCGCTCATCACTGTTCGCGCAGATTAATCAG AGTCTGCTTCCCGCTCATCACTGTTCGCACAGATTAATCAG < 41bp 1 0.405554204081787 1 0.0859212875366211 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAP1 ENSG00000131236 CDS Human protein_coding chr1:40533350 chr1:40533358 synonymous SNV . 0 29 hm5C_associated_SNPs_2761 0 0 1 0 1 Ribosome 1 0.500231643915699 1 0.999536712168602 hm5C_site_5983 DeepMRMD:1;iRNA_m5C:0.999536712168602 5984 chr1 40997371 40997371 1 + C T rs150418119 40997380 + 40997360 40997400 41 GGAAGTGCGGGCGGGTGTTGCTCCCCTGTCTCTGGACGACG GGAAGTGCGGGTGGGTGTTGCTCCCCTGTCTCTGGACGACG < 41bp 1 0.529482968580743 1 0.396405935287476 experiment 0.941034062838514 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF684 ENSG00000117010 UTR5 Human protein_coding chr1:40997380 chr1:40997371 . . 0 12 hm5C_associated_SNPs_2762 0 0 1 0 1 nucleoplasm 1 0.500231643920498 1 0.999536712159003 hm5C_site_5984 DeepMRMD:1;iRNA_m5C:0.999536712159003 5985 chr1 40997382 40997382 1 + C A rs138405225 40997380 + 40997360 40997400 41 GGAAGTGCGGGCGGGTGTTGCTCCCCTGTCTCTGGACGACG GGAAGTGCGGGCGGGTGTTGCTACCCTGTCTCTGGACGACG < 41bp 1 0.543472075280535 1 0.399595439434052 experiment 0.91305584943893 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF684 ENSG00000117010 UTR5 Human protein_coding chr1:40997380 chr1:40997382 . . 0 23 hm5C_associated_SNPs_2763 0 0 1 0 1 nucleoplasm 1 0.500231642976059 1 0.999536714047882 hm5C_site_5985 DeepMRMD:1;iRNA_m5C:0.999536714047882 5986 chr1 40997389 40997389 1 + C T rs41268069 40997380 + 40997360 40997400 41 GGAAGTGCGGGCGGGTGTTGCTCCCCTGTCTCTGGACGACG GGAAGTGCGGGCGGGTGTTGCTCCCCTGTTTCTGGACGACG < 41bp 1 0.544288138358786 1 0.586774468421936 experiment 0.911423723282428 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF684 ENSG00000117010 UTR5 Human protein_coding chr1:40997380 chr1:40997389 . . 0 30 hm5C_associated_SNPs_2764 0 0 1 0 1 nucleoplasm 1 0.500231643920409 0.826451063156128 0.999536712159182 hm5C_site_5986 DeepMRMD:0.826451063156128;iRNA_m5C:0.999536712159182 5987 chr1 41289887 41289887 1 + A C rs555850253 41289886 + 41289866 41289906 41 TCCCGTTACCCGCCCGTTGCCACCTGCCACCGGCCGGGCAG TCCCGTTACCCGCCCGTTGCCCCCTGCCACCGGCCGGGCAG < 41bp 1 0.491448047184829 1 0.131405264139175 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41289886 chr1:41289887 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_2767 0 0 0 0 1 chromatin 1 0.500231643921103 1 0.999536712157793 hm5C_site_5987 DeepMRMD:1;iRNA_m5C:0.999536712157793 5988 chr1 42925453 42925453 1 + G C rs61745591 42925451 + 42925431 42925471 41 CTAATATCCTTGAGTCACGACAGTCCTTTGTGTTTATTGTA CTAATATCCTTGAGTCACGACACTCCTTTGTGTTTATTGTA < 41bp 1 0.0601161024922597 1 0.0534726977348328 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPCS ENSG00000127125 CDS Human protein_coding chr1:42925451 chr1:42925453 nonsynonymous SNV 0.943 0 23 hm5C_associated_SNPs_2769 0 0 1 0 0 Ribosome 1 0.500231643965806 1 0.999536712068389 hm5C_site_5988 DeepMRMD:1;iRNA_m5C:0.999536712068389 5989 chr1 43882213 43882213 1 + C T rs375794037 43882219 + 43882199 43882239 41 GCTCCAGGGATTATCGTGATCACGGATGGGGTGACCAGTGT GCTCCAGGGATTATTGTGATCACGGATGGGGTGACCAGTGT < 41bp 1 0.509149006507833 1 0.406282156705856 experiment 0.981701986984334 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43882219 chr1:43882213 synonymous SNV . 0 15 hm5C_associated_SNPs_2770 0 0 1 0 2 Cytosol 1 0.500231643922733 1 0.999536712154534 hm5C_site_5989 DeepMRMD:1;iRNA_m5C:0.999536712154534 5990 chr1 43917083 43917083 1 + C G rs117454252 43917100 - 43917080 43917120 41 GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCGAGG GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCCAGG < 41bp 1 0.295300915066599 1 0.0429071187973022 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HYI ENSG00000178922 CDS Human protein_coding chr1:43917100 chr1:43917083 nonsynonymous SNV 0.478 1 38 hm5C_associated_SNPs_2771 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5990 DeepMRMD:1;iRNA_m5C:0.999536712157815 5991 chr1 43917098 43917098 1 + C G rs79439514 43917100 - 43917080 43917120 41 GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCGAGG GGCTACAAAGGCTTCGTGGGCTCTGAGTATCAGCCTCGAGG < 41bp 1 0.237214096294113 1 0.0792995989322662 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HYI;HYI ENSG00000178922;ENSG00000178922 exonic;splicing Human other chr1:43917100 chr1:43917098 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_2772 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_5991 DeepMRMD:1;iRNA_m5C:0.999536712157815 5992 chr1 44058227 44058227 1 + G A rs79766207 44058240 + 44058220 44058260 41 TATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCA TATGGGGATGGGCGTCTTCACCCCCACCATTGAGGCCCGCA < 41bp 1 0.13765468100786 1 0.0764477849006653 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44058240 chr1:44058227 nonsynonymous SNV 0.991 0 8 hm5C_associated_SNPs_2773 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_5992 DeepMRMD:1;iRNA_m5C:0.999536712157814 5993 chr1 44071221 44071221 1 + G A rs631248 44071222 + 44071202 44071242 41 GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGG GGTTCTACATTGTTGTGGTACCCATTGACCGTGTGGGCGGG < 41bp 1 0.101318890502918 1 0.0481720864772797 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071222 chr1:44071221 synonymous SNV . 0 20 hm5C_associated_SNPs_2774 0 0 1 0 2 Ribosome 1 0.500231637115492 1 0.999536725769017 hm5C_site_5993 DeepMRMD:1;iRNA_m5C:0.999536725769017 5994 chr1 44071221 44071221 1 + G A rs631248 44071223 + 44071203 44071243 41 GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGA GTTCTACATTGTTGTGGTACCCATTGACCGTGTGGGCGGGA < 41bp 1 0.0607859670379911 1 0.108093500137329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071223 chr1:44071221 synonymous SNV . 0 19 hm5C_associated_SNPs_2775 0 0 1 0 2 Ribosome 1 0.500306723596987 1 0.999386552806026 hm5C_site_5994 DeepMRMD:1;iRNA_m5C:0.999386552806026 5995 chr1 44087628 44087628 1 + G A rs141490430 44087609 + 44087589 44087629 41 GCCCCCTATCCTGGCAGGACCAGTATCAGCTGTGCTACCGT GCCCCCTATCCTGGCAGGACCAGTATCAGCTGTGCTACCAT < 41bp 1 0.355880805389725 1 0.485663563013077 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44087609 chr1:44087628 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_2776 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_5995 DeepMRMD:1;iRNA_m5C:0.999536712157815 5996 chr1 44087716 44087716 1 + C T rs368899845 44087702 + 44087682 44087722 41 TCCCCTCTCCTCCGCCACCCCCGCCGTGGGGCTCCGGAGGG TCCCCTCTCCTCCGCCACCCCCGCCGTGGGGCTCTGGAGGG < 41bp 1 0.250173848340385 1 0.523025095462799 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPRF ENSG00000142949 UTR3 Human protein_coding chr1:44087702 chr1:44087716 . . 0 35 hm5C_associated_SNPs_2777 0 0 1 0 0 Ribosome 1 0.500231643280508 0.953949809074402 0.999536713438984 hm5C_site_5996 DeepMRMD:0.953949809074402;iRNA_m5C:0.999536713438984 5997 chr1 44087716 44087716 1 + C T rs368899845 44087703 + 44087683 44087723 41 CCCCTCTCCTCCGCCACCCCCGCCGTGGGGCTCCGGAGGGG CCCCTCTCCTCCGCCACCCCCGCCGTGGGGCTCTGGAGGGG < 41bp 1 0.62057608879165 1 0.865944981575012 experiment 0.7588478224167 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPRF ENSG00000142949 UTR3 Human protein_coding chr1:44087703 chr1:44087716 . . 0 34 hm5C_associated_SNPs_2778 0 0 1 0 0 Ribosome 1 0.500231645655162 0.268110036849976 0.999536708689676 hm5C_site_5997 DeepMRMD:0.268110036849976;iRNA_m5C:0.999536708689676 5998 chr1 44087716 44087716 1 + C T rs368899845 44087705 + 44087685 44087725 41 CCTCTCCTCCGCCACCCCCGCCGTGGGGCTCCGGAGGGGAC CCTCTCCTCCGCCACCCCCGCCGTGGGGCTCTGGAGGGGAC < 41bp 1 0.183361995134406 1 0.536000907421112 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPRF ENSG00000142949 UTR3 Human protein_coding chr1:44087705 chr1:44087716 . . 0 32 hm5C_associated_SNPs_2779 0 0 1 0 0 Ribosome 1 0.500231643932139 0.927998185157776 0.999536712135721 hm5C_site_5998 DeepMRMD:0.927998185157776;iRNA_m5C:0.999536712135721 5999 chr1 44087716 44087716 1 + C T rs368899845 44087706 + 44087686 44087726 41 CTCTCCTCCGCCACCCCCGCCGTGGGGCTCCGGAGGGGACC CTCTCCTCCGCCACCCCCGCCGTGGGGCTCTGGAGGGGACC < 41bp 1 0.310816352565644 1 0.345284461975098 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPRF ENSG00000142949 UTR3 Human protein_coding chr1:44087706 chr1:44087716 . . 0 31 hm5C_associated_SNPs_2780 0 0 1 0 0 Ribosome 1 0.500231772081566 1 0.999536455836868 hm5C_site_5999 DeepMRMD:1;iRNA_m5C:0.999536455836868 6000 chr1 44446798 44446798 1 + C T rs141394710 44446804 + 44446784 44446824 41 AGCAGCCGGATGCCCGGGCCCACTGGGCGGGCCAGTGGCCG AGCAGCCGGATGCCTGGGCCCACTGGGCGGGCCAGTGGCCG < 41bp 1 0.617171668647554 1 0.134473651647568 experiment 0.765656662704892 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control B4GALT2 ENSG00000117411 CDS Human protein_coding chr1:44446804 chr1:44446798 nonsynonymous SNV 0.973 0 15 hm5C_associated_SNPs_2781 0 0 1 0 1 Cytosol 1 0.500231643830697 1 0.999536712338606 hm5C_site_6000 DeepMRMD:1;iRNA_m5C:0.999536712338606 6001 chr1 45116466 45116466 1 + G A rs374199001 45116468 + 45116448 45116488 41 GCTATCTGCCCCAGGCAGGCCTCGCCTCCAGCAGCCCCACC GCTATCTGCCCCAGGCAGACCTCGCCTCCAGCAGCCCCACC < 41bp 1 0.629063476154961 1 0.338775813579559 experiment 0.741873047690078 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45116468 chr1:45116466 . . 0 19 hm5C_associated_SNPs_2782 0 0 1 1 1 Ribosome 1 0.500231642832605 1 0.99953671433479 hm5C_site_6001 DeepMRMD:1;iRNA_m5C:0.99953671433479 6002 chr1 45116470 45116470 1 + C T rs186111768 45116468 + 45116448 45116488 41 GCTATCTGCCCCAGGCAGGCCTCGCCTCCAGCAGCCCCACC GCTATCTGCCCCAGGCAGGCCTTGCCTCCAGCAGCCCCACC < 41bp 1 0.302867877666219 1 0.0716997683048248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45116468 chr1:45116470 . . 0 23 hm5C_associated_SNPs_2784 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6002 DeepMRMD:1;iRNA_m5C:0.999536712157815 6003 chr1 45117273 45117273 1 + C G rs564081025 45117290 + 45117270 45117310 41 TGTCGTCTCCCCGACCCTCCCGTGGGCCCTGTGGTGTGATG TGTGGTCTCCCCGACCCTCCCGTGGGCCCTGTGGTGTGATG < 41bp 1 0.611731987592692 1 0.534039437770844 experiment 0.776536024814617 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45117290 chr1:45117273 . . 0 4 hm5C_associated_SNPs_2785 0 0 1 0 0 Ribosome 1 0.500231643921092 0.931921124458312 0.999536712157815 hm5C_site_6003 DeepMRMD:0.931921124458312;iRNA_m5C:0.999536712157815 6004 chr1 45117300 45117300 1 + G A rs2822 45117290 + 45117270 45117310 41 TGTCGTCTCCCCGACCCTCCCGTGGGCCCTGTGGTGTGATG TGTCGTCTCCCCGACCCTCCCGTGGGCCCTATGGTGTGATG < 41bp 1 0.667175094749498 1 0.509091079235077 experiment 0.665649810501004 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF220 ENSG00000187147 UTR3 Human protein_coding chr1:45117290 chr1:45117300 . . 0 31 hm5C_associated_SNPs_2786 0 0 1 0 0 Ribosome 1 0.500231643921095 0.981817841529846 0.999536712157809 hm5C_site_6004 DeepMRMD:0.981817841529846;iRNA_m5C:0.999536712157809 6005 chr1 45241254 45241254 1 + A G rs550212070 45241253 + 45241233 45241273 41 ATCTTTGCGGTTTCTCTTTCCAGCCAGCGCCGAGCGATGGG ATCTTTGCGGTTTCTCTTTCCGGCCAGCGCCGAGCGATGGG < 41bp 1 0.528931658118861 1 0.737863123416901 experiment 0.942136683762279 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS8 ENSG00000225721 ncRNA_exonic Human antisense chr1:45241253 chr1:45241254 . . 0 22 hm5C_associated_SNPs_2787 0 0 1 0 1 Cytosol 1 0.500231643921096 0.524273753166198 0.999536712157808 hm5C_site_6005 DeepMRMD:0.524273753166198;iRNA_m5C:0.999536712157808 6006 chr1 45241254 45241254 1 + A G rs550212070 45241260 + 45241240 45241280 41 CGGTTTCTCTTTCCAGCCAGCGCCGAGCGATGGGTGAGTGT CGGTTTCTCTTTCCGGCCAGCGCCGAGCGATGGGTGAGTGT < 41bp 1 0.611830142289394 1 0.451420187950134 experiment 0.776339715421213 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS8 ENSG00000225721 ncRNA_exonic Human antisense chr1:45241260 chr1:45241254 . . 0 15 hm5C_associated_SNPs_2788 0 0 1 0 1 Cytosol 1 0.500231645936463 1 0.999536708127073 hm5C_site_6006 DeepMRMD:1;iRNA_m5C:0.999536708127073 6007 chr1 45241268 45241268 1 + G A rs74070602 45241253 + 45241233 45241273 41 ATCTTTGCGGTTTCTCTTTCCAGCCAGCGCCGAGCGATGGG ATCTTTGCGGTTTCTCTTTCCAGCCAGCGCCGAGCAATGGG < 41bp 1 0.451061776946286 1 0.404592961072922 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS8 ENSG00000225721 ncRNA_exonic Human antisense chr1:45241253 chr1:45241268 . . 0 36 hm5C_associated_SNPs_2789 0 0 1 0 1 Cytosol 1 0.500231643921052 1 0.999536712157895 hm5C_site_6007 DeepMRMD:1;iRNA_m5C:0.999536712157895 6008 chr1 45241268 45241268 1 + G A rs74070602 45241260 + 45241240 45241280 41 CGGTTTCTCTTTCCAGCCAGCGCCGAGCGATGGGTGAGTGT CGGTTTCTCTTTCCAGCCAGCGCCGAGCAATGGGTGAGTGT < 41bp 1 0.585421153362095 1 0.448462724685669 experiment 0.82915769327581 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS8 ENSG00000225721 ncRNA_exonic Human antisense chr1:45241260 chr1:45241268 . . 0 29 hm5C_associated_SNPs_2790 0 0 1 0 1 Cytosol 1 0.500231643926146 1 0.999536712147707 hm5C_site_6008 DeepMRMD:1;iRNA_m5C:0.999536712147707 6009 chr1 45241587 45241587 1 + G A rs41269073 45241568 + 45241548 45241588 41 CAACTCGGTAATGCTGCATACTCCCGAGTGCGCGGTGGGGA CAACTCGGTAATGCTGCATACTCCCGAGTGCGCGGTGGGAA < 41bp 1 0.302600774846513 1 0.118364840745926 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD55 ENSG00000264294 ncRNA_exonic Human snoRNA chr1:45241568 chr1:45241587 . . 0 40 hm5C_associated_SNPs_2791 0 0 1 0 0 unknown 1 0.500231642629894 1 0.999536714740212 hm5C_site_6009 DeepMRMD:1;iRNA_m5C:0.999536714740212 6010 chr1 45241587 45241587 1 + G A rs41269073 45241572 + 45241552 45241592 41 TCGGTAATGCTGCATACTCCCGAGTGCGCGGTGGGGAAGCC TCGGTAATGCTGCATACTCCCGAGTGCGCGGTGGGAAAGCC < 41bp 1 0.627849710182817 1 0.66996306180954 experiment 0.744300579634366 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD55 ENSG00000264294 ncRNA_exonic Human snoRNA chr1:45241572 chr1:45241587 . . 0 36 hm5C_associated_SNPs_2792 0 0 1 0 0 unknown 1 0.500231643921092 0.66007387638092 0.999536712157815 hm5C_site_6010 DeepMRMD:0.66007387638092;iRNA_m5C:0.999536712157815 6011 chr1 45241587 45241587 1 + G A rs41269073 45241580 + 45241560 45241600 41 GCTGCATACTCCCGAGTGCGCGGTGGGGAAGCCAACCTTGG GCTGCATACTCCCGAGTGCGCGGTGGGAAAGCCAACCTTGG < 41bp 1 0.667877927450238 1 0.600303292274475 experiment 0.664244145099524 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD55 ENSG00000264294 ncRNA_exonic Human snoRNA chr1:45241580 chr1:45241587 . . 0 28 hm5C_associated_SNPs_2794 0 0 1 0 0 unknown 1 0.500231643921093 0.79939341545105 0.999536712157814 hm5C_site_6011 DeepMRMD:0.79939341545105;iRNA_m5C:0.999536712157814 6012 chr1 45241587 45241587 1 + G A rs41269073 45241591 + 45241571 45241611 41 CCGAGTGCGCGGTGGGGAAGCCAACCTTGGAGAGCTGAGCG CCGAGTGCGCGGTGGGAAAGCCAACCTTGGAGAGCTGAGCG < 41bp 1 0.180793619477475 1 0.243176758289337 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD55 ENSG00000264294 ncRNA_exonic Human snoRNA chr1:45241591 chr1:45241587 . . 0 17 hm5C_associated_SNPs_2795 0 0 1 0 0 unknown 1 0.500231245098118 1 0.999537509803765 hm5C_site_6012 DeepMRMD:1;iRNA_m5C:0.999537509803765 6013 chr1 45241587 45241587 1 + G A rs41269073 45241595 + 45241575 45241615 41 GTGCGCGGTGGGGAAGCCAACCTTGGAGAGCTGAGCGTGCG GTGCGCGGTGGGAAAGCCAACCTTGGAGAGCTGAGCGTGCG < 41bp 1 0.128666644770157 1 0.0646465420722961 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD55 ENSG00000264294 ncRNA_exonic Human snoRNA chr1:45241595 chr1:45241587 . . 0 13 hm5C_associated_SNPs_2796 0 0 1 0 0 unknown 1 0.500231643921654 1 0.999536712156691 hm5C_site_6013 DeepMRMD:1;iRNA_m5C:0.999536712156691 6014 chr1 45241587 45241587 1 + G A rs41269073 45241605 + 45241585 45241625 41 GGGAAGCCAACCTTGGAGAGCTGAGCGTGCGACCGGCCCGG GGAAAGCCAACCTTGGAGAGCTGAGCGTGCGACCGGCCCGG < 41bp 1 0.604674084814701 1 0.0591348707675934 experiment 0.790651830370598 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD55 ENSG00000264294 ncRNA_exonic Human snoRNA chr1:45241605 chr1:45241587 . . 0 3 hm5C_associated_SNPs_2797 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6014 DeepMRMD:1;iRNA_m5C:0.999536712157815 6015 chr1 45242241 45242241 1 + C A rs377221663 45242222 + 45242202 45242242 41 CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACT CCGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAAT < 41bp 1 0.088519399822264 1 0.0854395031929016 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242222 chr1:45242241 . . 0 40 hm5C_associated_SNPs_2798 0 0 1 6 0 unknown 1 0.500231590559348 1 0.999536818881303 hm5C_site_6015 DeepMRMD:1;iRNA_m5C:0.999536818881303 6016 chr1 45242241 45242241 1 + C A rs377221663 45242223 + 45242203 45242243 41 CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTT CGTCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATT < 41bp 1 0.085582021237864 1 0.037137359380722 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242223 chr1:45242241 . . 0 39 hm5C_associated_SNPs_2799 0 0 1 6 0 unknown 1 0.500231630362517 1 0.999536739274967 hm5C_site_6016 DeepMRMD:1;iRNA_m5C:0.999536739274967 6017 chr1 45242241 45242241 1 + C A rs377221663 45242225 + 45242205 45242245 41 TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGT TCTTGGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGT < 41bp 1 0.101058980074407 1 0.0359610915184021 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242225 chr1:45242241 . . 0 37 hm5C_associated_SNPs_2800 0 0 1 6 0 unknown 1 0.500230294091477 1 0.999539411817047 hm5C_site_6017 DeepMRMD:1;iRNA_m5C:0.999539411817047 6018 chr1 45242241 45242241 1 + C A rs377221663 45242229 + 45242209 45242249 41 GGTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATA GGTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATA < 41bp 1 0.204811415488608 1 0.103399157524109 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242229 chr1:45242241 . . 0 33 hm5C_associated_SNPs_2801 0 0 1 6 0 unknown 1 0.500231768123013 1 0.999536463753974 hm5C_site_6018 DeepMRMD:1;iRNA_m5C:0.999536463753974 6019 chr1 45242241 45242241 1 + C A rs377221663 45242230 + 45242210 45242250 41 GTCACCTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAG GTCACCTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAG < 41bp 1 0.369775720974019 1 0.338373422622681 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242230 chr1:45242241 . . 0 32 hm5C_associated_SNPs_2802 0 0 1 6 0 unknown 1 0.50023211986424 1 0.999535760271519 hm5C_site_6019 DeepMRMD:1;iRNA_m5C:0.999535760271519 6020 chr1 45242241 45242241 1 + C A rs377221663 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGAATTGTCATAGTTACA < 41bp 1 0.527510869655693 1 0.311053544282913 experiment 0.944978260688613 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242241 . . 0 27 hm5C_associated_SNPs_2803 0 0 1 6 0 unknown 1 0.50023164375787 1 0.999536712484261 hm5C_site_6020 DeepMRMD:1;iRNA_m5C:0.999536712484261 6021 chr1 45242241 45242241 1 + C A rs377221663 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGAATTGTCATAGTTACACTGACTGTTGC < 41bp 1 0.499553424467317 1 0.549023568630219 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242241 . . 0 16 hm5C_associated_SNPs_2804 0 0 1 6 0 unknown 1 0.500231611346701 0.901952862739562 0.999536777306599 hm5C_site_6021 DeepMRMD:0.901952862739562;iRNA_m5C:0.999536777306599 6022 chr1 45242241 45242241 1 + C A rs377221663 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA AATTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.348112217237537 1 0.0569844245910645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242241 . . 0 2 hm5C_associated_SNPs_2805 0 0 1 6 0 unknown 1 0.500231644318467 1 0.999536711363065 hm5C_site_6022 DeepMRMD:1;iRNA_m5C:0.999536711363065 6023 chr1 45242255 45242255 1 + A G rs541727514 45242235 + 45242215 45242255 41 CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACA CTGTGTGCCACTTGCCAATGCAAGGACTTGTCATAGTTACG < 41bp 1 0.492052304348857 1 0.309055864810944 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242235 chr1:45242255 . . 0 41 hm5C_associated_SNPs_2806 0 0 1 6 0 unknown 1 0.500231643102757 1 0.999536713794485 hm5C_site_6023 DeepMRMD:1;iRNA_m5C:0.999536713794485 6024 chr1 45242255 45242255 1 + A G rs541727514 45242241 + 45242221 45242261 41 GCCACTTGCCAATGCAAGGACTTGTCATAGTTACACTGACT GCCACTTGCCAATGCAAGGACTTGTCATAGTTACGCTGACT < 41bp 1 0.155867480017086 1 0.19263020157814 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242241 chr1:45242255 . . 0 35 hm5C_associated_SNPs_2807 0 0 1 6 0 unknown 1 0.500231644122639 1 0.999536711754723 hm5C_site_6024 DeepMRMD:1;iRNA_m5C:0.999536711754723 6025 chr1 45242255 45242255 1 + A G rs541727514 45242246 + 45242226 45242266 41 TTGCCAATGCAAGGACTTGTCATAGTTACACTGACTGTTGC TTGCCAATGCAAGGACTTGTCATAGTTACGCTGACTGTTGC < 41bp 1 0.472008490944456 1 0.498896896839142 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242246 chr1:45242255 . . 0 30 hm5C_associated_SNPs_2808 0 0 1 6 0 unknown 1 0.500231603821004 1 0.999536792357992 hm5C_site_6025 DeepMRMD:1;iRNA_m5C:0.999536792357992 6026 chr1 45242255 45242255 1 + A G rs541727514 45242260 + 45242240 45242280 41 ACTTGTCATAGTTACACTGACTGTTGCCTCCTCCCGGCCCA ACTTGTCATAGTTACGCTGACTGTTGCCTCCTCCCGGCCCA < 41bp 1 0.424753005743334 1 0.0314220786094666 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD46 ENSG00000200913 ncRNA_exonic Human snoRNA chr1:45242260 chr1:45242255 . . 0 16 hm5C_associated_SNPs_2809 0 0 1 6 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6026 DeepMRMD:1;iRNA_m5C:0.999536712157815 6027 chr1 45243546 45243546 1 + A G rs76870991 45243531 + 45243511 45243551 41 GCCTTCTCGTGATGAAAACTCTGTCCAGTTCTGCTACTGAA GCCTTCTCGTGATGAAAACTCTGTCCAGTTCTGCTGCTGAA < 41bp 1 0.245266957575151 1 0.148018598556519 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD38A ENSG00000202031 ncRNA_exonic Human snoRNA chr1:45243531 chr1:45243546 . . 0 36 hm5C_associated_SNPs_2810 0 0 1 1 0 unknown 1 0.5002316444908 1 0.999536711018401 hm5C_site_6027 DeepMRMD:1;iRNA_m5C:0.999536711018401 6028 chr1 45243546 45243546 1 + A G rs76870991 45243544 + 45243524 45243564 41 GAAAACTCTGTCCAGTTCTGCTACTGAAGGGAGAGAGATGA GAAAACTCTGTCCAGTTCTGCTGCTGAAGGGAGAGAGATGA < 41bp 1 0.277614988169867 1 0.297598958015442 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD38A ENSG00000202031 ncRNA_exonic Human snoRNA chr1:45243544 chr1:45243546 . . 0 23 hm5C_associated_SNPs_2811 0 0 1 1 0 unknown 1 0.500231602495053 1 0.999536795009895 hm5C_site_6028 DeepMRMD:1;iRNA_m5C:0.999536795009895 6029 chr1 45243546 45243546 1 + A G rs76870991 45243547 + 45243527 45243567 41 AACTCTGTCCAGTTCTGCTACTGAAGGGAGAGAGATGAGAG AACTCTGTCCAGTTCTGCTGCTGAAGGGAGAGAGATGAGAG < 41bp 1 0.615077118069518 1 0.472555100917816 experiment 0.769845763860963 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD38A ENSG00000202031 ncRNA_exonic Human snoRNA chr1:45243547 chr1:45243546 . . 0 20 hm5C_associated_SNPs_2812 0 0 1 1 0 unknown 1 0.500231643921828 1 0.999536712156345 hm5C_site_6029 DeepMRMD:1;iRNA_m5C:0.999536712156345 6030 chr1 45267302 45267302 1 + C A rs140199593 45267317 + 45267297 45267337 41 CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC CTGGCACACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC < 41bp 1 0.256386456940148 1 0.539131283760071 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267317 chr1:45267302 synonymous SNV . 0 6 hm5C_associated_SNPs_2813 0 0 1 0 1 Cytosol 1 0.500229124791812 0.921737432479858 0.999541750416377 hm5C_site_6030 DeepMRMD:0.921737432479858;iRNA_m5C:0.999541750416377 6031 chr1 45270024 45270024 1 + G A rs11211036 45270016 + 45269996 45270036 41 CCTCTCCCATGACAGCGGAACAGAACCCGGCCCCCCTGGCC CCTCTCCCATGACAGCGGAACAGAACCCAGCCCCCCTGGCC < 41bp 1 0.599613530653705 1 0.545477628707886 experiment 0.80077293869259 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270016 chr1:45270024 synonymous SNV . 0 29 hm5C_associated_SNPs_2814 0 0 1 0 1 Cytosol 1 0.500231643921092 0.909044742584228 0.999536712157815 hm5C_site_6031 DeepMRMD:0.909044742584228;iRNA_m5C:0.999536712157815 6032 chr1 45479709 45479709 1 + A G rs2228084 45479707 + 45479687 45479727 41 TCCTCACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTG TCCTCACTGATGCTCTGGTCCCGTATCTGGTAGGACAAGTG < 41bp 1 0.380126084857442 1 0.0864208042621613 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UROD ENSG00000126088 CDS Human protein_coding chr1:45479707 chr1:45479709 synonymous SNV . 0 23 hm5C_associated_SNPs_2815 2 0 1 0 1 Ribosome 1 0.500231643922017 1 0.999536712155966 hm5C_site_6032 DeepMRMD:1;iRNA_m5C:0.999536712155966 not specified not specified 6033 chr1 45479709 45479709 1 + A G rs2228084 45479708 + 45479688 45479728 41 CCTCACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTGG CCTCACTGATGCTCTGGTCCCGTATCTGGTAGGACAAGTGG < 41bp 1 0.318788745423037 1 0.159823358058929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UROD ENSG00000126088 CDS Human protein_coding chr1:45479708 chr1:45479709 synonymous SNV . 0 22 hm5C_associated_SNPs_2816 2 0 1 0 1 Ribosome 1 0.500231658408208 1 0.999536683183585 hm5C_site_6033 DeepMRMD:1;iRNA_m5C:0.999536683183585 not specified not specified 6034 chr1 45793570 45793570 1 + G C rs150145508 45793580 + 45793560 45793600 41 TCCTGGCCCGGCACAAGGGGCCAGGCCTGCAGCACGTGGGG TCCTGGCCCGCCACAAGGGGCCAGGCCTGCAGCACGTGGGG < 41bp 1 0.230348228814402 1 0.300845265388489 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HPDL ENSG00000186603 CDS Human protein_coding chr1:45793580 chr1:45793570 synonymous SNV . 0 11 hm5C_associated_SNPs_2818 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6034 DeepMRMD:1;iRNA_m5C:0.999536712157815 6035 chr1 45793570 45793570 1 + G C rs150145508 45793581 + 45793561 45793601 41 CCTGGCCCGGCACAAGGGGCCAGGCCTGCAGCACGTGGGGC CCTGGCCCGCCACAAGGGGCCAGGCCTGCAGCACGTGGGGC < 41bp 1 0.479886597229541 1 0.690344929695129 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HPDL ENSG00000186603 CDS Human protein_coding chr1:45793581 chr1:45793570 synonymous SNV . 0 10 hm5C_associated_SNPs_2819 0 0 0 0 0 exosome 1 0.500231644404047 0.619310140609742 0.999536711191905 hm5C_site_6035 DeepMRMD:0.619310140609742;iRNA_m5C:0.999536711191905 6036 chr1 45805880 45805880 1 + G A rs2275602 45805874 + 45805854 45805894 41 GAACCGCGCCAGGAGACGGACCGCAAGTCCAGCGTACCCAC GAACCGCGCCAGGAGACGGACCGCAAATCCAGCGTACCCAC < 41bp 1 0.678132701402358 1 0.0803314447402954 experiment 0.643734597195283 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TOE1 ENSG00000132781 CDS Human protein_coding chr1:45805874 chr1:45805880 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_2821 1 0 0 0 1 Ribosome 1 0.500231783342847 1 0.999536433314306 hm5C_site_6036 DeepMRMD:1;iRNA_m5C:0.999536433314306 not specified not specified 6037 chr1 45973928 45973928 1 + G A rs2275276 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATTGCTGACTACGAGGTACACCCCAACCGACGCCCCAAG < 41bp 1 0.266807064835338 1 0.0367278158664703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973928 synonymous SNV . 0 20 hm5C_associated_SNPs_2823 2 0 0 0 1 Cytosol 1 0.500231643920494 1 0.999536712159011 hm5C_site_6037 DeepMRMD:1;iRNA_m5C:0.999536712159011 not specified not specified 6038 chr1 45975197 45975197 1 + G A rs146159774 45975198 + 45975178 45975218 41 TGGGTTCAAGCAATTATCTGCCTCAGCCTCCTGAGTAGCTG TGGGTTCAAGCAATTATCTACCTCAGCCTCCTGAGTAGCTG < 41bp 1 0.190060873817154 1 0.0330477058887482 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMACHC ENSG00000132763 UTR3 Human protein_coding chr1:45975198 chr1:45975197 . . 0 20 hm5C_associated_SNPs_2824 1 0 1 0 0 Cytosol 1 0.500231615441777 1 0.999536769116446 hm5C_site_6038 DeepMRMD:1;iRNA_m5C:0.999536769116446 Disorders of Intracellular Cobalamin Metabolism Disorders of Intracellular Cobalamin Metabolism 6039 chr1 45975197 45975197 1 + G A rs146159774 45975208 + 45975188 45975228 41 CAATTATCTGCCTCAGCCTCCTGAGTAGCTGGGATGACAGG CAATTATCTACCTCAGCCTCCTGAGTAGCTGGGATGACAGG < 41bp 1 0.405078951636053 1 0.194563269615173 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMACHC ENSG00000132763 UTR3 Human protein_coding chr1:45975208 chr1:45975197 . . 0 10 hm5C_associated_SNPs_2825 1 0 1 0 0 Cytosol 1 0.50023161650581 1 0.999536766988379 hm5C_site_6039 DeepMRMD:1;iRNA_m5C:0.999536766988379 Disorders of Intracellular Cobalamin Metabolism Disorders of Intracellular Cobalamin Metabolism 6040 chr1 46016687 46016687 1 + T C rs9147 46016668 + 46016648 46016688 41 GGGAGGCGGCGAAGGCGGTCCACCCTGCGCGTGATCCTTTA GGGAGGCGGCGAAGGCGGTCCACCCTGCGCGTGATCCTTCA < 41bp 1 0.47091002005146 1 0.285261988639832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKR1A1 ENSG00000117448 UTR5 Human protein_coding chr1:46016668 chr1:46016687 . . 0 40 hm5C_associated_SNPs_2826 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_6040 DeepMRMD:1;iRNA_m5C:0.999536712157817 6041 chr1 46016736 46016736 1 + C T rs885755 46016728 + 46016708 46016748 41 CCTCCGGGTGGAACTTCCCCCTCACCGCCAGACTTAAGCTG CCTCCGGGTGGAACTTCCCCCTCACCGCTAGACTTAAGCTG < 41bp 1 0.321014323235359 1 0.09308722615242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 UTR5 Human protein_coding chr1:46016728 chr1:46016736 . . 0 29 hm5C_associated_SNPs_2827 0 0 1 0 2 Ribosome 1 0.500231643918996 1 0.999536712162007 hm5C_site_6041 DeepMRMD:1;iRNA_m5C:0.999536712162007 6042 chr1 46016736 46016736 1 + C T rs885755 46016732 + 46016712 46016752 41 CGGGTGGAACTTCCCCCTCACCGCCAGACTTAAGCTGAGGA CGGGTGGAACTTCCCCCTCACCGCTAGACTTAAGCTGAGGA < 41bp 1 0.234050358983179 1 0.194869220256805 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 UTR5 Human protein_coding chr1:46016732 chr1:46016736 . . 0 25 hm5C_associated_SNPs_2828 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6042 DeepMRMD:1;iRNA_m5C:0.999536712157815 6043 chr1 46033227 46033227 1 + C T rs140240182 46033247 + 46033227 46033267 41 CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAA TGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAA < 41bp 1 0.189290141638492 1 0.323192030191422 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 UTR3 Human protein_coding chr1:46033247 chr1:46033227 . . 0 1 hm5C_associated_SNPs_2829 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6043 DeepMRMD:1;iRNA_m5C:0.999536712157815 6044 chr1 46033251 46033251 1 + G A rs113016864 46033247 + 46033227 46033267 41 CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAA CGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCTAA < 41bp 1 0.256806719845532 1 0.451088070869446 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 UTR3 Human protein_coding chr1:46033247 chr1:46033251 . . 0 25 hm5C_associated_SNPs_2830 0 0 0 0 0 Ribosome 1 0.50023164392112 1 0.999536712157761 hm5C_site_6044 DeepMRMD:1;iRNA_m5C:0.999536712157761 6045 chr1 46033251 46033251 1 + G A rs113016864 46033248 + 46033228 46033268 41 GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAAG GGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCTAAG < 41bp 1 0.0344255831803565 1 0.184249550104141 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 UTR3 Human protein_coding chr1:46033248 chr1:46033251 . . 0 24 hm5C_associated_SNPs_2831 0 0 0 0 0 Ribosome 1 0.500246929871855 1 0.99950614025629 hm5C_site_6045 DeepMRMD:1;iRNA_m5C:0.99950614025629 6046 chr1 46033251 46033251 1 + G A rs113016864 46033249 + 46033229 46033269 41 GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAAGG GTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCTAAGG < 41bp 1 0.433671761472835 1 0.481307566165924 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 UTR3 Human protein_coding chr1:46033249 chr1:46033251 . . 0 23 hm5C_associated_SNPs_2832 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_6046 DeepMRMD:1;iRNA_m5C:0.999536712157815 6047 chr1 46033265 46033265 1 + T C rs2356416 46033247 + 46033227 46033267 41 CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAA CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAA < 41bp 1 0.210668097030368 1 0.374295383691788 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 intronic Human protein_coding chr1:46033247 chr1:46033265 . . 0 39 hm5C_associated_SNPs_2833 0 0 0 0 0 Ribosome 1 0.500231131017675 1 0.999537737964651 hm5C_site_6047 DeepMRMD:1;iRNA_m5C:0.999537737964651 6048 chr1 46033265 46033265 1 + T C rs2356416 46033248 + 46033228 46033268 41 GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAAG GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAG < 41bp 1 0.103913785455743 1 0.201655447483063 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 intronic Human protein_coding chr1:46033248 chr1:46033265 . . 0 38 hm5C_associated_SNPs_2834 0 0 0 0 0 Ribosome 1 0.500230794651071 1 0.999538410697858 hm5C_site_6048 DeepMRMD:1;iRNA_m5C:0.999538410697858 6049 chr1 46033265 46033265 1 + T C rs2356416 46033249 + 46033229 46033269 41 GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAAGG GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGG < 41bp 1 0.625574127373731 1 0.72612202167511 experiment 0.748851745252538 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 intronic Human protein_coding chr1:46033249 chr1:46033265 . . 0 37 hm5C_associated_SNPs_2835 0 0 0 0 0 Ribosome 1 0.500231470568395 0.54775595664978 0.999537058863209 hm5C_site_6049 DeepMRMD:0.54775595664978;iRNA_m5C:0.999537058863209 6050 chr1 46033266 46033266 1 + A G rs2356415 46033247 + 46033227 46033267 41 CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAA CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGA < 41bp 1 0.180039305824548 1 0.255079627037048 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 intronic Human protein_coding chr1:46033247 chr1:46033266 . . 0 40 hm5C_associated_SNPs_2836 0 0 0 0 0 Ribosome 1 0.500231643921113 1 0.999536712157774 hm5C_site_6050 DeepMRMD:1;iRNA_m5C:0.999536712157774 6051 chr1 46033266 46033266 1 + A G rs2356415 46033248 + 46033228 46033268 41 GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAAG GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAG < 41bp 1 0.0966205910059154 1 0.149532377719879 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 intronic Human protein_coding chr1:46033248 chr1:46033266 . . 0 39 hm5C_associated_SNPs_2837 0 0 0 0 0 Ribosome 1 0.500230806914478 1 0.999538386171043 hm5C_site_6051 DeepMRMD:1;iRNA_m5C:0.999538386171043 6052 chr1 46033266 46033266 1 + A G rs2356415 46033249 + 46033229 46033269 41 GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAAGG GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGG < 41bp 1 0.598658449825724 1 0.849385440349579 experiment 0.802683100348553 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1A1 ENSG00000117448 intronic Human protein_coding chr1:46033249 chr1:46033266 . . 0 38 hm5C_associated_SNPs_2838 0 0 0 0 0 Ribosome 1 0.500231643921092 0.301229119300842 0.999536712157815 hm5C_site_6052 DeepMRMD:0.301229119300842;iRNA_m5C:0.999536712157815 6053 chr1 46033327 46033327 1 + G A rs570992339 46033325 + 46033305 46033345 41 CTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAA CTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAA < 41bp 1 0.0149201226766752 1 0.0688089430332184 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AKR1A1 ENSG00000117448 intronic Human protein_coding chr1:46033325 chr1:46033327 . . 0 23 hm5C_associated_SNPs_2839 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_6053 DeepMRMD:1;iRNA_m5C:0.999536712157814 6054 chr1 46077263 46077263 1 + C T rs142405185 46077276 + 46077256 46077296 41 CGCCTCCCGAGTAGCTGGGACTACAGGCATGTGCCACCACG CGCCTCCTGAGTAGCTGGGACTACAGGCATGTGCCACCACG < 41bp 1 0.408915967423991 1 0.421772003173828 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NASP ENSG00000132780 intronic Human protein_coding chr1:46077276 chr1:46077263 . . 0 8 hm5C_associated_SNPs_2840 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6054 DeepMRMD:1;iRNA_m5C:0.999536712157815 6055 chr1 46077263 46077263 1 + C T rs142405185 46077279 + 46077259 46077299 41 CTCCCGAGTAGCTGGGACTACAGGCATGTGCCACCACGCCT CTCCTGAGTAGCTGGGACTACAGGCATGTGCCACCACGCCT < 41bp 1 0.647668319029211 1 0.659355700016022 experiment 0.704663361941577 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NASP ENSG00000132780 intronic Human protein_coding chr1:46077279 chr1:46077263 . . 0 5 hm5C_associated_SNPs_2841 0 0 1 0 0 Nucleus 1 0.500231643921035 0.681288599967956 0.999536712157929 hm5C_site_6055 DeepMRMD:0.681288599967956;iRNA_m5C:0.999536712157929 6056 chr1 46077263 46077263 1 + C T rs142405185 46077283 + 46077263 46077303 41 CGAGTAGCTGGGACTACAGGCATGTGCCACCACGCCTGGCT TGAGTAGCTGGGACTACAGGCATGTGCCACCACGCCTGGCT < 41bp 1 0.205628894067508 1 0.688117861747742 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NASP ENSG00000132780 intronic Human protein_coding chr1:46077283 chr1:46077263 . . 0 1 hm5C_associated_SNPs_2842 0 0 1 0 0 Nucleus 1 0.500231644115264 0.623764276504516 0.999536711769472 hm5C_site_6056 DeepMRMD:0.623764276504516;iRNA_m5C:0.999536711769472 6057 chr1 46739327 46739327 1 + G A rs28363239 46739322 + 46739302 46739342 41 TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGCCGT TGCTGGTCCTGGATTATATTCTGGCAGTGACCCGAAGCCGT < 41bp 1 0.600158543800808 1 0.37013965845108 experiment 0.799682912398384 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739322 chr1:46739327 synonymous SNV . 0 26 hm5C_associated_SNPs_2843 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6057 DeepMRMD:1;iRNA_m5C:0.999536712157815 6058 chr1 46739814 46739814 1 + T C rs17102097 46739819 + 46739799 46739839 41 TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGAT TCCCCCTTCAGGTACCTATACGTCCGCCTGGATGGCACGAT < 41bp 1 0.147296025900437 1 0.125300168991089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739819 chr1:46739814 synonymous SNV . 0 16 hm5C_associated_SNPs_2844 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6058 DeepMRMD:1;iRNA_m5C:0.999536712157815 6059 chr1 46827416 46827416 1 + A G rs566394939 46827413 + 46827393 46827433 41 TTCCGAAGGGTTTTCATGGACACATTTTGTTTCTTCTCATC TTCCGAAGGGTTTTCATGGACACGTTTTGTTTCTTCTCATC < 41bp 1 0.641521158487205 1 0.0473441183567047 experiment 0.716957683025591 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NSUN4 ENSG00000117481 CDS Human protein_coding chr1:46827413 chr1:46827416 synonymous SNV . 0 24 hm5C_associated_SNPs_2845 0 0 1 0 0 Cytosol 1 0.500157504760888 1 0.999684990478224 hm5C_site_6059 DeepMRMD:1;iRNA_m5C:0.999684990478224 6060 chr1 46871986 46871986 1 + T A rs324419 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC CGAGCCCTGCTGTGAGAGGACATGTTCCGCTTGGACCCCAC < 41bp 1 0.390160185578547 1 0.120622038841248 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46871986 stopgain 0.970 0 15 hm5C_associated_SNPs_2846 0 0 0 0 2 Ribosome 1 0.500231631784702 1 0.999536736430596 hm5C_site_6060 DeepMRMD:1;iRNA_m5C:0.999536736430596 6061 chr1 51434863 51434863 1 + A C rs138559346 51434855 + 51434835 51434875 41 CTGCCCCGGAACTGCGGCGACTCTCCCTACTCAGAACTTGG CTGCCCCGGAACTGCGGCGACTCTCCCTCCTCAGAACTTGG < 41bp 1 0.111058926485963 1 0.0309658348560333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDKN2C ENSG00000123080 UTR5 Human protein_coding chr1:51434855 chr1:51434863 . . 0 29 hm5C_associated_SNPs_2848 0 0 1 0 0 Cytosol 1 0.500231653789197 1 0.999536692421607 hm5C_site_6061 DeepMRMD:1;iRNA_m5C:0.999536692421607 6062 chr1 51434863 51434863 1 + A C rs138559346 51434857 + 51434837 51434877 41 GCCCCGGAACTGCGGCGACTCTCCCTACTCAGAACTTGGCC GCCCCGGAACTGCGGCGACTCTCCCTCCTCAGAACTTGGCC < 41bp 1 0.339047071500115 1 0.320804357528687 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDKN2C ENSG00000123080 UTR5 Human protein_coding chr1:51434857 chr1:51434863 . . 0 27 hm5C_associated_SNPs_2849 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_6062 DeepMRMD:1;iRNA_m5C:0.999536712157814 6063 chr1 51701956 51701956 1 + C A rs72896451 51701973 + 51701953 51701993 41 AGCCGGCCTCGTTCTGGCTGCCGCCGTCTCGCTGAGGCGGA AGCAGGCCTCGTTCTGGCTGCCGCCGTCTCGCTGAGGCGGA < 41bp 1 0.480432479401997 1 0.192568570375443 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF11 ENSG00000123091 UTR5 Human protein_coding chr1:51701973 chr1:51701956 . . 0 4 hm5C_associated_SNPs_2850 0 0 1 0 0 Cytosol 1 0.500231643921022 1 0.999536712157955 hm5C_site_6063 DeepMRMD:1;iRNA_m5C:0.999536712157955 6064 chr1 51701980 51701980 1 + C G rs571851078 51701973 + 51701953 51701993 41 AGCCGGCCTCGTTCTGGCTGCCGCCGTCTCGCTGAGGCGGA AGCCGGCCTCGTTCTGGCTGCCGCCGTGTCGCTGAGGCGGA < 41bp 1 0.506528965160906 1 0.315492153167725 experiment 0.986942069678188 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF11 ENSG00000123091 UTR5 Human protein_coding chr1:51701973 chr1:51701980 . . 0 28 hm5C_associated_SNPs_2851 0 0 1 0 0 Cytosol 1 0.500230954846737 1 0.999538090306526 hm5C_site_6064 DeepMRMD:1;iRNA_m5C:0.999538090306526 6065 chr1 51702198 51702198 1 + G A rs574881567 51702178 + 51702158 51702198 41 CTTCGTCTCCCCGCCCCCCCCCCCCCATCGCTGCCTCGCAG CTTCGTCTCCCCGCCCCCCCCCCCCCATCGCTGCCTCGCAA < 41bp 1 0.513609522630516 1 0.245699405670166 experiment 0.972780954738968 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF11 ENSG00000123091 UTR5 Human protein_coding chr1:51702178 chr1:51702198 . . 0 41 hm5C_associated_SNPs_2852 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6065 DeepMRMD:1;iRNA_m5C:0.999536712157815 6066 chr1 51702198 51702198 1 + G A rs574881567 51702179 + 51702159 51702199 41 TTCGTCTCCCCGCCCCCCCCCCCCCATCGCTGCCTCGCAGG TTCGTCTCCCCGCCCCCCCCCCCCCATCGCTGCCTCGCAAG < 41bp 1 0.404685249308492 1 0.406878441572189 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF11 ENSG00000123091 UTR5 Human protein_coding chr1:51702179 chr1:51702198 . . 0 40 hm5C_associated_SNPs_2853 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6066 DeepMRMD:1;iRNA_m5C:0.999536712157815 6067 chr1 51702198 51702198 1 + G A rs574881567 51702180 + 51702160 51702200 41 TCGTCTCCCCGCCCCCCCCCCCCCATCGCTGCCTCGCAGGA TCGTCTCCCCGCCCCCCCCCCCCCATCGCTGCCTCGCAAGA < 41bp 1 0.692669765531991 1 0.401851177215576 experiment 0.614660468936019 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF11 ENSG00000123091 UTR5 Human protein_coding chr1:51702180 chr1:51702198 . . 0 39 hm5C_associated_SNPs_2854 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_6067 DeepMRMD:1;iRNA_m5C:0.999536712157817 6068 chr1 51702198 51702198 1 + G A rs574881567 51702181 + 51702161 51702201 41 CGTCTCCCCGCCCCCCCCCCCCCATCGCTGCCTCGCAGGAG CGTCTCCCCGCCCCCCCCCCCCCATCGCTGCCTCGCAAGAG < 41bp 1 0.454602801055355 1 0.138167440891266 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF11 ENSG00000123091 UTR5 Human protein_coding chr1:51702181 chr1:51702198 . . 0 38 hm5C_associated_SNPs_2855 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6068 DeepMRMD:1;iRNA_m5C:0.999536712157815 6069 chr1 51702198 51702198 1 + G A rs574881567 51702182 + 51702162 51702202 41 GTCTCCCCGCCCCCCCCCCCCCATCGCTGCCTCGCAGGAGG GTCTCCCCGCCCCCCCCCCCCCATCGCTGCCTCGCAAGAGG < 41bp 1 0.33646023342788 1 0.20307320356369 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF11 ENSG00000123091 UTR5 Human protein_coding chr1:51702182 chr1:51702198 . . 0 37 hm5C_associated_SNPs_2856 0 0 1 0 0 Cytosol 1 0.50023164392424 1 0.999536712151519 hm5C_site_6069 DeepMRMD:1;iRNA_m5C:0.999536712151519 6070 chr1 52554695 52554695 1 + G A rs149348732 52554680 + 52554660 52554700 41 GTCCTCAGGTGATTCATTTGCCTCGGCCTCCCAAAGTGCTA GTCCTCAGGTGATTCATTTGCCTCGGCCTCCCAAAATGCTA < 41bp 1 0.578871915199172 1 0.12102472782135 experiment 0.842256169601656 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3L4 ENSG00000134717 UTR3 Human protein_coding chr1:52554680 chr1:52554695 . . 0 36 hm5C_associated_SNPs_2858 0 0 0 0 0 Ribosome 1 0.500231643921684 1 0.999536712156631 hm5C_site_6070 DeepMRMD:1;iRNA_m5C:0.999536712156631 6071 chr1 53676448 53676448 1 + G A rs1799821 53676443 + 53676423 53676463 41 TATCGCCAAGGATGGCTCTACTGCCGTCCACTTTGAGCACT TATCGCCAAGGATGGCTCTACTGCCATCCACTTTGAGCACT < 41bp 1 0.341882462844367 1 0.110030710697174 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CPT2 ENSG00000157184 CDS Human protein_coding chr1:53676443 chr1:53676448 nonsynonymous SNV 0.594 1 26 hm5C_associated_SNPs_2859 3 0 1 0 0 Ribosome 1 0.500232627307462 1 0.999534745385077 hm5C_site_6071 DeepMRMD:1;iRNA_m5C:0.999534745385077 Encephalopathy, acute, infection-induced, 4, susceptibility to Encephalopathy, acute, infection-induced, 4, susceptibility to 6072 chr1 54678305 54678305 1 + C G rs2275408 54678323 + 54678303 54678343 41 CCCTGGCTCAGGCCCGGCTCCTCTATGGGGTATGTAGGTGG CCGTGGCTCAGGCCCGGCTCCTCTATGGGGTATGTAGGTGG < 41bp 1 0.662797740216002 1 0.82034957408905 experiment 0.674404519567996 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54678323 chr1:54678305 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_2860 0 0 1 0 1 Ribosome 1 0.500231643921364 0.3593008518219 0.999536712157272 hm5C_site_6072 DeepMRMD:0.3593008518219;iRNA_m5C:0.999536712157272 6073 chr1 55072915 55072915 1 + G A rs35914008 55072914 + 55072894 55072934 41 GGACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA GGACTTCGTGATCCTGGCCTCAAGGCGGAAGCCTTGTGACA < 41bp 1 0.662176502810757 1 0.791965186595917 experiment 0.675646994378486 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55072914 chr1:55072915 synonymous SNV . 0 22 hm5C_associated_SNPs_2861 0 0 0 0 1 chromatin 1 0.500231644001266 0.416069626808166 0.999536711997469 hm5C_site_6073 DeepMRMD:0.416069626808166;iRNA_m5C:0.999536711997469 6074 chr1 55073630 55073630 1 + C T rs78753605 55073619 + 55073599 55073639 41 CCCTTCCTTCACTCAGGGACCCCTATGTCATCGCGCTGAGG CCCTTCCTTCACTCAGGGACCCCTATGTCATTGCGCTGAGG < 41bp 1 0.140426948044892 1 0.0307919383049011 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55073619 chr1:55073630 synonymous SNV . 0 32 hm5C_associated_SNPs_2862 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_6074 DeepMRMD:1;iRNA_m5C:0.999536712157815 6075 chr1 55208168 55208168 1 + G A rs146616469 55208169 + 55208149 55208189 41 ACACATTTCCCACAGAGGAGCCGTTCCATGGAGCCGAGCTA ACACATTTCCCACAGAGGAACCGTTCCATGGAGCCGAGCTA < 41bp 1 0.186010005024495 1 0.072713315486908 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MROH7-TTC4 ENSG00000243725 UTR3 Human protein_coding chr1:55208169 chr1:55208168 . . 0 20 hm5C_associated_SNPs_2863 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6075 DeepMRMD:1;iRNA_m5C:0.999536712157815 6076 chr1 55208204 55208204 1 + C T rs12086065 55208210 + 55208190 55208230 41 CAGCAGCTGGCCTGCAGCCACTGAGTGTCACAGCAATGAGA CAGCAGCTGGCCTGTAGCCACTGAGTGTCACAGCAATGAGA < 41bp 1 0.547967187427395 1 0.0658943057060242 experiment 0.904065625145209 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MROH7-TTC4 ENSG00000243725 UTR3 Human protein_coding chr1:55208210 chr1:55208204 . . 0 15 hm5C_associated_SNPs_2864 0 0 0 0 0 exosome 1 0.500231644002694 1 0.999536711994612 hm5C_site_6076 DeepMRMD:1;iRNA_m5C:0.999536711994612 6077 chr1 55524222 55524222 1 + C T rs141502002 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACATGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG < 41bp 1 0.168545791997513 1 0.10378897190094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524222 nonsynonymous SNV 0.003 2 8 hm5C_associated_SNPs_2865 3 0 1 0 2 Nucleus 1 0.500231644595302 1 0.999536710809396 hm5C_site_6077 DeepMRMD:1;iRNA_m5C:0.999536710809396 not specified not specified 6078 chr1 55524222 55524222 1 + C T rs141502002 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACATGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA < 41bp 1 0.502398332737606 1 0.198266088962555 experiment 0.995203334524789 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524222 nonsynonymous SNV 0.003 2 7 hm5C_associated_SNPs_2866 3 0 1 0 2 Nucleus 1 0.500229240034107 1 0.999541519931787 hm5C_site_6078 DeepMRMD:1;iRNA_m5C:0.999541519931787 not specified not specified 6079 chr1 55524237 55524237 1 + G A rs562556 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCATCGCCCGCTGCGCCCCAG < 41bp 1 0.0842436065513793 1 0.0793194472789764 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524237 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_2867 3 0 1 0 2 Nucleus 1 0.50023164392043 1 0.999536712159139 hm5C_site_6079 DeepMRMD:1;iRNA_m5C:0.999536712159139 not specified not specified 6080 chr1 55524237 55524237 1 + G A rs562556 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCATCGCCCGCTGCGCCCCAGA < 41bp 1 0.470897833471504 1 0.200772851705551 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524237 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_2868 3 0 1 0 2 Nucleus 1 0.500231195395988 1 0.999537609208023 hm5C_site_6080 DeepMRMD:1;iRNA_m5C:0.999537609208023 not specified not specified 6081 chr1 55524248 55524248 1 + C T rs28362268 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCGTCGCCCGCTGTGCCCCAG < 41bp 1 0.140401040797392 1 0.23630428314209 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524248 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_2869 1 0 1 0 2 Nucleus 1 0.500231644359748 1 0.999536711280504 hm5C_site_6081 DeepMRMD:1;iRNA_m5C:0.999536711280504 Hypercholesterolemia, autosomal dominant, 3 Hypercholesterolemia, autosomal dominant, 3 6082 chr1 55524248 55524248 1 + C T rs28362268 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCGTCGCCCGCTGTGCCCCAGA < 41bp 1 0.535112025612918 1 0.402252674102783 experiment 0.929775948774163 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524248 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_2870 1 0 1 0 2 Nucleus 1 0.500215959241639 1 0.999568081516722 hm5C_site_6082 DeepMRMD:1;iRNA_m5C:0.999568081516722 Hypercholesterolemia, autosomal dominant, 3 Hypercholesterolemia, autosomal dominant, 3 6083 chr1 55529489 55529489 1 + C T rs145330737 55529491 + 55529471 55529511 41 TGCCAGGAAGCTCCCTCCCTCACTGTGGGGCATTTCACCAT TGCCAGGAAGCTCCCTCCTTCACTGTGGGGCATTTCACCAT < 41bp 1 0.497765279152788 1 0.139269977807999 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCSK9 ENSG00000169174 UTR3 Human protein_coding chr1:55529491 chr1:55529489 . . 0 19 hm5C_associated_SNPs_2871 2 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6083 DeepMRMD:1;iRNA_m5C:0.999536712157815 Familial hypobetalipoproteinemia Familial hypobetalipoproteinemia 6084 chr1 57178966 57178966 1 + A G rs113848788 57178968 + 57178948 57178988 41 GCTGGGTCTAGAAGAGTTATCAGACTGTAGGCCTGTATTAA GCTGGGTCTAGAAGAGTTGTCAGACTGTAGGCCTGTATTAA < 41bp 1 0.502571867167024 1 0.448406249284744 experiment 0.994856265665953 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAA2 ENSG00000162409 UTR3 Human protein_coding chr1:57178968 chr1:57178966 . . 0 19 hm5C_associated_SNPs_2872 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921142 1 0.999536712157716 hm5C_site_6084 DeepMRMD:1;iRNA_m5C:0.999536712157716 6085 chr1 59812016 59812016 1 + C T rs183693555 59811996 + 59811976 59812016 41 ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGTACGTC ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGTACGTT < 41bp 1 0.394154136902456 1 0.0583830177783966 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FGGY ENSG00000172456 CDS Human protein_coding chr1:59811996 chr1:59812016 synonymous SNV . 0 41 hm5C_associated_SNPs_2873 0 0 0 0 2 Endoplasmic reticulum 1 0.500231671409262 1 0.999536657181477 hm5C_site_6085 DeepMRMD:1;iRNA_m5C:0.999536657181477 6086 chr1 60341205 60341205 1 + A G rs12756232 60341204 + 60341184 60341224 41 ATAAACATTTCATCTTGAACCATGATTTATACACATCTGTG ATAAACATTTCATCTTGAACCGTGATTTATACACATCTGTG < 41bp 1 0.622265630221544 1 0.0933361351490021 experiment 0.755468739556913 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HOOK1 ENSG00000134709 UTR3 Human protein_coding chr1:60341204 chr1:60341205 . . 0 22 hm5C_associated_SNPs_2874 0 0 1 0 0 cytosol 1 0.50023165838488 1 0.99953668323024 hm5C_site_6086 DeepMRMD:1;iRNA_m5C:0.99953668323024 6087 chr1 60341212 60341212 1 + A G rs370113171 60341204 + 60341184 60341224 41 ATAAACATTTCATCTTGAACCATGATTTATACACATCTGTG ATAAACATTTCATCTTGAACCATGATTTGTACACATCTGTG < 41bp 1 0.61063764063101 1 0.202769249677658 experiment 0.77872471873798 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HOOK1 ENSG00000134709 UTR3 Human protein_coding chr1:60341204 chr1:60341212 . . 0 29 hm5C_associated_SNPs_2875 0 0 1 0 0 cytosol 1 0.500212975056224 1 0.999574049887552 hm5C_site_6087 DeepMRMD:1;iRNA_m5C:0.999574049887552 6088 chr1 62455935 62455935 1 + A G rs77717948 62455922 + 62455902 62455942 41 GATAAGAATGGACTTGGACTCAGCCTTGCTGGTAATAAAGA GATAAGAATGGACTTGGACTCAGCCTTGCTGGTGATAAAGA < 41bp 1 0.23787486029858 1 0.510276079177856 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PATJ ENSG00000132849 CDS Human protein_coding chr1:62455922 chr1:62455935 nonsynonymous SNV 0.993 4 34 hm5C_associated_SNPs_2876 0 0 1 0 1 Nucleus 1 0.500231643918147 0.979447841644288 0.999536712163706 hm5C_site_6088 DeepMRMD:0.979447841644288;iRNA_m5C:0.999536712163706 6089 chr1 62614029 62614029 1 + C T rs183715116 62614035 + 62614015 62614055 41 CTACCACCTTGGTTCGCCCACTGCTGAACACCATCCAGAAG CTACCACCTTGGTTTGCCCACTGCTGAACACCATCCAGAAG < 41bp 1 0.274161177575928 1 0.103326171636581 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PATJ ENSG00000132849 CDS Human protein_coding chr1:62614035 chr1:62614029 nonsynonymous SNV 0.050 2 15 hm5C_associated_SNPs_2877 0 0 0 0 1 Nucleus 1 0.500231643166094 1 0.999536713667811 hm5C_site_6089 DeepMRMD:1;iRNA_m5C:0.999536713667811 6090 chr1 62627204 62627204 1 + C T rs11207914 62627218 + 62627198 62627238 41 ATGGAGCTTCCCCATGTGGGCCAGGCTGGTCTTGAACTTCT ATGGAGTTTCCCCATGTGGGCCAGGCTGGTCTTGAACTTCT < 41bp 1 0.200874190330614 1 0.130078732967377 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627218 chr1:62627204 . . 0 7 hm5C_associated_SNPs_2878 0 0 0 0 0 Nucleus 1 0.500231643940492 1 0.999536712119016 hm5C_site_6090 DeepMRMD:1;iRNA_m5C:0.999536712119016 6091 chr1 62627204 62627204 1 + C T rs11207914 62627219 + 62627199 62627239 41 TGGAGCTTCCCCATGTGGGCCAGGCTGGTCTTGAACTTCTG TGGAGTTTCCCCATGTGGGCCAGGCTGGTCTTGAACTTCTG < 41bp 1 0.188451223326864 1 0.15992072224617 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627219 chr1:62627204 . . 0 6 hm5C_associated_SNPs_2879 0 0 0 0 0 Nucleus 1 0.500231644113935 1 0.999536711772131 hm5C_site_6091 DeepMRMD:1;iRNA_m5C:0.999536711772131 6092 chr1 62627204 62627204 1 + C T rs11207914 62627223 + 62627203 62627243 41 GCTTCCCCATGTGGGCCAGGCTGGTCTTGAACTTCTGACCT GTTTCCCCATGTGGGCCAGGCTGGTCTTGAACTTCTGACCT < 41bp 1 0.435039845799077 1 0.0558501780033112 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627223 chr1:62627204 . . 0 2 hm5C_associated_SNPs_2880 0 0 0 0 0 Nucleus 1 0.500231643920931 1 0.999536712158139 hm5C_site_6092 DeepMRMD:1;iRNA_m5C:0.999536712158139 6093 chr1 62627241 62627241 1 + C T rs12059368 62627223 + 62627203 62627243 41 GCTTCCCCATGTGGGCCAGGCTGGTCTTGAACTTCTGACCT GCTTCCCCATGTGGGCCAGGCTGGTCTTGAACTTCTGATCT < 41bp 1 0.436093326940273 1 0.0381635427474976 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627223 chr1:62627241 . . 0 39 hm5C_associated_SNPs_2881 0 0 0 0 0 Nucleus 1 0.500231643920207 1 0.999536712159586 hm5C_site_6093 DeepMRMD:1;iRNA_m5C:0.999536712159586 6094 chr1 62627241 62627241 1 + C T rs12059368 62627228 + 62627208 62627248 41 CCCATGTGGGCCAGGCTGGTCTTGAACTTCTGACCTCAGGT CCCATGTGGGCCAGGCTGGTCTTGAACTTCTGATCTCAGGT < 41bp 1 0.351431135343726 1 0.370398759841919 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627228 chr1:62627241 . . 0 34 hm5C_associated_SNPs_2882 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6094 DeepMRMD:1;iRNA_m5C:0.999536712157815 6095 chr1 62627241 62627241 1 + C T rs12059368 62627234 + 62627214 62627254 41 TGGGCCAGGCTGGTCTTGAACTTCTGACCTCAGGTGATCTG TGGGCCAGGCTGGTCTTGAACTTCTGATCTCAGGTGATCTG < 41bp 1 0.164639014288644 1 0.0247833430767059 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627234 chr1:62627241 . . 0 28 hm5C_associated_SNPs_2883 0 0 0 0 0 Nucleus 1 0.500231643930642 1 0.999536712138716 hm5C_site_6095 DeepMRMD:1;iRNA_m5C:0.999536712138716 6096 chr1 62627241 62627241 1 + C T rs12059368 62627237 + 62627217 62627257 41 GCCAGGCTGGTCTTGAACTTCTGACCTCAGGTGATCTGCCT GCCAGGCTGGTCTTGAACTTCTGATCTCAGGTGATCTGCCT < 41bp 1 0.317828597039779 1 0.297252476215363 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627237 chr1:62627241 . . 0 25 hm5C_associated_SNPs_2884 0 0 0 0 0 Nucleus 1 0.500231643089719 1 0.999536713820562 hm5C_site_6096 DeepMRMD:1;iRNA_m5C:0.999536713820562 6097 chr1 62627241 62627241 1 + C T rs12059368 62627242 + 62627222 62627262 41 GCTGGTCTTGAACTTCTGACCTCAGGTGATCTGCCTGCCTT GCTGGTCTTGAACTTCTGATCTCAGGTGATCTGCCTGCCTT < 41bp 1 0.549106153612192 1 0.428429543972015 experiment 0.901787692775616 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627242 chr1:62627241 . . 0 20 hm5C_associated_SNPs_2885 0 0 0 0 0 Nucleus 1 0.500231777184847 1 0.999536445630307 hm5C_site_6097 DeepMRMD:1;iRNA_m5C:0.999536445630307 6098 chr1 62627241 62627241 1 + C T rs12059368 62627244 + 62627224 62627264 41 TGGTCTTGAACTTCTGACCTCAGGTGATCTGCCTGCCTTGG TGGTCTTGAACTTCTGATCTCAGGTGATCTGCCTGCCTTGG < 41bp 1 0.61373958479238 1 0.890827417373657 experiment 0.772520830415239 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627244 chr1:62627241 . . 0 18 hm5C_associated_SNPs_2886 0 0 0 0 0 Nucleus 1 0.500231643920932 0.218345165252686 0.999536712158137 hm5C_site_6098 DeepMRMD:0.218345165252686;iRNA_m5C:0.999536712158137 6099 chr1 62627241 62627241 1 + C T rs12059368 62627255 + 62627235 62627275 41 TTCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGT TTCTGATCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGT < 41bp 1 0.0646203671743024 1 0.0399920046329498 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627255 chr1:62627241 . . 0 7 hm5C_associated_SNPs_2887 0 0 0 0 0 Nucleus 1 0.500229988730689 1 0.999540022538623 hm5C_site_6099 DeepMRMD:1;iRNA_m5C:0.999540022538623 6100 chr1 62627241 62627241 1 + C T rs12059368 62627256 + 62627236 62627276 41 TCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTG TCTGATCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTG < 41bp 1 0.411307377951681 1 0.11386513710022 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627256 chr1:62627241 . . 0 6 hm5C_associated_SNPs_2888 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6100 DeepMRMD:1;iRNA_m5C:0.999536712157815 6101 chr1 62627241 62627241 1 + C T rs12059368 62627259 + 62627239 62627279 41 GACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTG GATCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTG < 41bp 1 0.0771379592113965 1 0.106670737266541 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627259 chr1:62627241 . . 0 3 hm5C_associated_SNPs_2889 0 0 0 0 0 Nucleus 1 0.50023164328921 1 0.99953671342158 hm5C_site_6101 DeepMRMD:1;iRNA_m5C:0.99953671342158 6102 chr1 62627241 62627241 1 + C T rs12059368 62627260 + 62627240 62627280 41 ACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGG ATCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGG < 41bp 1 0.291110623664623 1 0.0932193696498871 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627260 chr1:62627241 . . 0 2 hm5C_associated_SNPs_2890 0 0 0 0 0 Nucleus 1 0.500231643919314 1 0.999536712161371 hm5C_site_6102 DeepMRMD:1;iRNA_m5C:0.999536712161371 6103 chr1 62627257 62627257 1 + T C rs184761151 62627237 + 62627217 62627257 41 GCCAGGCTGGTCTTGAACTTCTGACCTCAGGTGATCTGCCT GCCAGGCTGGTCTTGAACTTCTGACCTCAGGTGATCTGCCC < 41bp 1 0.27195135375478 1 0.597360849380493 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627237 chr1:62627257 . . 0 41 hm5C_associated_SNPs_2891 0 0 0 0 0 Nucleus 1 0.500231643129506 0.805278301239014 0.999536713740987 hm5C_site_6103 DeepMRMD:0.805278301239014;iRNA_m5C:0.999536713740987 6104 chr1 62627257 62627257 1 + T C rs184761151 62627241 + 62627221 62627261 41 GGCTGGTCTTGAACTTCTGACCTCAGGTGATCTGCCTGCCT GGCTGGTCTTGAACTTCTGACCTCAGGTGATCTGCCCGCCT < 41bp 1 0.149771515974021 1 0.146321415901184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627241 chr1:62627257 . . 0 37 hm5C_associated_SNPs_2892 0 0 0 0 0 Nucleus 1 0.50023164392107 1 0.99953671215786 hm5C_site_6104 DeepMRMD:1;iRNA_m5C:0.99953671215786 6105 chr1 62627257 62627257 1 + T C rs184761151 62627242 + 62627222 62627262 41 GCTGGTCTTGAACTTCTGACCTCAGGTGATCTGCCTGCCTT GCTGGTCTTGAACTTCTGACCTCAGGTGATCTGCCCGCCTT < 41bp 1 0.565568833655747 1 0.685972452163696 experiment 0.868862332688507 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627242 chr1:62627257 . . 0 36 hm5C_associated_SNPs_2893 0 0 0 0 0 Nucleus 1 0.500516708962036 0.628055095672608 0.998966582075929 hm5C_site_6105 DeepMRMD:0.628055095672608;iRNA_m5C:0.998966582075929 6106 chr1 62627257 62627257 1 + T C rs184761151 62627244 + 62627224 62627264 41 TGGTCTTGAACTTCTGACCTCAGGTGATCTGCCTGCCTTGG TGGTCTTGAACTTCTGACCTCAGGTGATCTGCCCGCCTTGG < 41bp 1 0.541968481464273 1 0.8896164894104 experiment 0.916063037071454 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627244 chr1:62627257 . . 0 34 hm5C_associated_SNPs_2894 0 0 0 0 0 Nucleus 1 0.500231643835254 0.2207670211792 0.999536712329491 hm5C_site_6106 DeepMRMD:0.2207670211792;iRNA_m5C:0.999536712329491 6107 chr1 62627257 62627257 1 + T C rs184761151 62627255 + 62627235 62627275 41 TTCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGT TTCTGACCTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGT < 41bp 1 0.15822438757494 1 0.0925415754318237 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627255 chr1:62627257 . . 0 23 hm5C_associated_SNPs_2895 0 0 0 0 0 Nucleus 1 0.500231357090262 1 0.999537285819475 hm5C_site_6107 DeepMRMD:1;iRNA_m5C:0.999537285819475 6108 chr1 62627257 62627257 1 + T C rs184761151 62627256 + 62627236 62627276 41 TCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTG TCTGACCTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTG < 41bp 1 0.240665512200162 1 0.217543542385101 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627256 chr1:62627257 . . 0 22 hm5C_associated_SNPs_2896 0 0 0 0 0 Nucleus 1 0.500231643922402 1 0.999536712155196 hm5C_site_6108 DeepMRMD:1;iRNA_m5C:0.999536712155196 6109 chr1 62627257 62627257 1 + T C rs184761151 62627259 + 62627239 62627279 41 GACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTG GACCTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTG < 41bp 1 0.0720914027207032 1 0.0742811560630798 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627259 chr1:62627257 . . 0 19 hm5C_associated_SNPs_2897 0 0 0 0 0 Nucleus 1 0.500231644073273 1 0.999536711853453 hm5C_site_6109 DeepMRMD:1;iRNA_m5C:0.999536711853453 6110 chr1 62627257 62627257 1 + T C rs184761151 62627260 + 62627240 62627280 41 ACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGG ACCTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGG < 41bp 1 0.234381608412511 1 0.0977108180522919 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627260 chr1:62627257 . . 0 18 hm5C_associated_SNPs_2898 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6110 DeepMRMD:1;iRNA_m5C:0.999536712157815 6111 chr1 62627257 62627257 1 + T C rs184761151 62627265 + 62627245 62627285 41 AGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTC AGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTC < 41bp 1 0.0495608932245835 1 0.218440502882004 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627265 chr1:62627257 . . 0 13 hm5C_associated_SNPs_2899 0 0 0 0 0 Nucleus 1 0.500231643922033 1 0.999536712155933 hm5C_site_6111 DeepMRMD:1;iRNA_m5C:0.999536712155933 6112 chr1 62627257 62627257 1 + T C rs184761151 62627266 + 62627246 62627286 41 GGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTCC GGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTCC < 41bp 1 0.238886835351155 1 0.070153146982193 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627266 chr1:62627257 . . 0 12 hm5C_associated_SNPs_2900 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6112 DeepMRMD:1;iRNA_m5C:0.999536712157815 6113 chr1 62627257 62627257 1 + T C rs184761151 62627268 + 62627248 62627288 41 TGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTCCAG TGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTCCAG < 41bp 1 0.171090128265367 1 0.218069463968277 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627268 chr1:62627257 . . 0 10 hm5C_associated_SNPs_2901 0 0 0 0 0 Nucleus 1 0.500231688165269 1 0.999536623669463 hm5C_site_6113 DeepMRMD:1;iRNA_m5C:0.999536623669463 6114 chr1 62627257 62627257 1 + T C rs184761151 62627269 + 62627249 62627289 41 GATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTCCAGG GATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTCCAGG < 41bp 1 0.226278700419792 1 0.246338069438934 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627269 chr1:62627257 . . 0 9 hm5C_associated_SNPs_2902 0 0 0 0 0 Nucleus 1 0.500231641834869 1 0.999536716330261 hm5C_site_6114 DeepMRMD:1;iRNA_m5C:0.999536716330261 6115 chr1 62627257 62627257 1 + T C rs184761151 62627270 + 62627250 62627290 41 ATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTCCAGGC ATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTCCAGGC < 41bp 1 0.447276011804541 1 0.60084730386734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627270 chr1:62627257 . . 0 8 hm5C_associated_SNPs_2903 0 0 0 0 0 Nucleus 1 0.500231822037995 0.79830539226532 0.999536355924009 hm5C_site_6115 DeepMRMD:0.79830539226532;iRNA_m5C:0.999536355924009 6116 chr1 62627257 62627257 1 + T C rs184761151 62627277 + 62627257 62627297 41 TGCCTTGGCCTCCCAAAGTGCTGGGATTCCAGGCGTGAGCC CGCCTTGGCCTCCCAAAGTGCTGGGATTCCAGGCGTGAGCC < 41bp 1 0.672788898894128 1 0.517816364765167 experiment 0.654422202211744 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627277 chr1:62627257 . . 0 1 hm5C_associated_SNPs_2904 0 0 0 0 0 Nucleus 1 0.500231661970393 0.964367270469666 0.999536676059214 hm5C_site_6116 DeepMRMD:0.964367270469666;iRNA_m5C:0.999536676059214 6117 chr1 62627990 62627990 1 + T C rs17123158 62627973 + 62627953 62627993 41 AAGTTTTGTCTCAAGTCAGACAAGGTCTAGGTGGCCTTGGC AAGTTTTGTCTCAAGTCAGACAAGGTCTAGGTGGCCTCGGC < 41bp 1 0.431481193090742 1 0.827799320220947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62627973 chr1:62627990 . . 0 38 hm5C_associated_SNPs_2905 0 0 0 0 0 Nucleus 1 0.500231643884406 0.344401359558106 0.999536712231188 hm5C_site_6117 DeepMRMD:0.344401359558106;iRNA_m5C:0.999536712231188 6118 chr1 62628396 62628396 1 + G A rs145204719 62628391 + 62628371 62628411 41 AGCACTTTGGGAGGCCAGGGCAGGCGAATCATGAGGTCAGG AGCACTTTGGGAGGCCAGGGCAGGCAAATCATGAGGTCAGG < 41bp 1 0.605538168323197 1 0.782156407833099 experiment 0.788923663353607 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628391 chr1:62628396 . . 0 26 hm5C_associated_SNPs_2908 0 0 0 0 0 Nucleus 1 0.500231643921092 0.435687184333802 0.999536712157815 hm5C_site_6118 DeepMRMD:0.435687184333802;iRNA_m5C:0.999536712157815 6119 chr1 62628396 62628396 1 + G A rs145204719 62628395 + 62628375 62628415 41 CTTTGGGAGGCCAGGGCAGGCGAATCATGAGGTCAGGAGTT CTTTGGGAGGCCAGGGCAGGCAAATCATGAGGTCAGGAGTT < 41bp 1 0.438514156406501 1 0.594612717628479 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628395 chr1:62628396 . . 0 22 hm5C_associated_SNPs_2909 0 0 0 0 0 Nucleus 1 0.500231643921963 0.810774564743042 0.999536712156074 hm5C_site_6119 DeepMRMD:0.810774564743042;iRNA_m5C:0.999536712156074 6120 chr1 62628406 62628406 1 + G A rs137888430 62628391 + 62628371 62628411 41 AGCACTTTGGGAGGCCAGGGCAGGCGAATCATGAGGTCAGG AGCACTTTGGGAGGCCAGGGCAGGCGAATCATGAGATCAGG < 41bp 1 0.631774342255525 1 0.829643189907074 experiment 0.736451315488949 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628391 chr1:62628406 . . 0 36 hm5C_associated_SNPs_2912 0 0 0 0 0 Nucleus 1 0.500231643921092 0.340713620185852 0.999536712157815 hm5C_site_6120 DeepMRMD:0.340713620185852;iRNA_m5C:0.999536712157815 6121 chr1 62628406 62628406 1 + G A rs137888430 62628395 + 62628375 62628415 41 CTTTGGGAGGCCAGGGCAGGCGAATCATGAGGTCAGGAGTT CTTTGGGAGGCCAGGGCAGGCGAATCATGAGATCAGGAGTT < 41bp 1 0.457265339113963 1 0.639859199523926 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628395 chr1:62628406 . . 0 32 hm5C_associated_SNPs_2913 0 0 0 0 0 Nucleus 1 0.500231643921092 0.720281600952148 0.999536712157815 hm5C_site_6121 DeepMRMD:0.720281600952148;iRNA_m5C:0.999536712157815 6122 chr1 62628406 62628406 1 + G A rs137888430 62628421 + 62628401 62628441 41 ATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGA ATGAGATCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGA < 41bp 1 0.139903189523523 1 0.0694246292114258 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628421 chr1:62628406 . . 0 6 hm5C_associated_SNPs_2915 0 0 0 0 0 Nucleus 1 0.500231643922338 1 0.999536712155324 hm5C_site_6122 DeepMRMD:1;iRNA_m5C:0.999536712155324 6123 chr1 62628406 62628406 1 + G A rs137888430 62628422 + 62628402 62628442 41 TGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAA TGAGATCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAA < 41bp 1 0.374486383692745 1 0.169253557920456 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628422 chr1:62628406 . . 0 5 hm5C_associated_SNPs_2916 0 0 0 0 0 Nucleus 1 0.500231499177139 1 0.999537001645723 hm5C_site_6123 DeepMRMD:1;iRNA_m5C:0.999537001645723 6124 chr1 62628406 62628406 1 + G A rs137888430 62628425 + 62628405 62628445 41 GGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAAACC GATCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAAACC < 41bp 1 0.194201790351205 1 0.185774624347687 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628425 chr1:62628406 . . 0 2 hm5C_associated_SNPs_2917 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6124 DeepMRMD:1;iRNA_m5C:0.999536712157815 6125 chr1 62628406 62628406 1 + G A rs137888430 62628426 + 62628406 62628446 41 GTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAAACCC ATCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAAACCC < 41bp 1 0.303676762179357 1 0.208380937576294 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628426 chr1:62628406 . . 0 1 hm5C_associated_SNPs_2918 0 0 0 0 0 Nucleus 1 0.500231737932596 1 0.999536524134808 hm5C_site_6125 DeepMRMD:1;iRNA_m5C:0.999536524134808 6126 chr1 62628416 62628416 1 + C T rs540058706 62628421 + 62628401 62628441 41 ATGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGA ATGAGGTCAGGAGTTTGAGACCAGCCTGGCCAATATGGTGA < 41bp 1 0.162354760545489 1 0.114756047725677 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628421 chr1:62628416 . . 0 16 hm5C_associated_SNPs_2919 0 0 0 0 0 Nucleus 1 0.500231643921089 1 0.999536712157822 hm5C_site_6126 DeepMRMD:1;iRNA_m5C:0.999536712157822 6127 chr1 62628416 62628416 1 + C T rs540058706 62628422 + 62628402 62628442 41 TGAGGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAA TGAGGTCAGGAGTTTGAGACCAGCCTGGCCAATATGGTGAA < 41bp 1 0.379910274374261 1 0.129643738269806 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628422 chr1:62628416 . . 0 15 hm5C_associated_SNPs_2920 0 0 0 0 0 Nucleus 1 0.50023163546203 1 0.99953672907594 hm5C_site_6127 DeepMRMD:1;iRNA_m5C:0.99953672907594 6128 chr1 62628416 62628416 1 + C T rs540058706 62628425 + 62628405 62628445 41 GGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAAACC GGTCAGGAGTTTGAGACCAGCCTGGCCAATATGGTGAAACC < 41bp 1 0.187660216970918 1 0.109731674194336 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628425 chr1:62628416 . . 0 12 hm5C_associated_SNPs_2921 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6128 DeepMRMD:1;iRNA_m5C:0.999536712157815 6129 chr1 62628416 62628416 1 + C T rs540058706 62628426 + 62628406 62628446 41 GTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAAACCC GTCAGGAGTTTGAGACCAGCCTGGCCAATATGGTGAAACCC < 41bp 1 0.291190023959344 1 0.213372349739075 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628426 chr1:62628416 . . 0 11 hm5C_associated_SNPs_2922 0 0 0 0 0 Nucleus 1 0.50023042329374 1 0.99953915341252 hm5C_site_6129 DeepMRMD:1;iRNA_m5C:0.99953915341252 6130 chr1 62628416 62628416 1 + C T rs540058706 62628430 + 62628410 62628450 41 GGAGTTCGAGACCAGCCTGGCCAATATGGTGAAACCCTGTC GGAGTTTGAGACCAGCCTGGCCAATATGGTGAAACCCTGTC < 41bp 1 0.0728296269143675 1 0.0829909145832062 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628430 chr1:62628416 . . 0 7 hm5C_associated_SNPs_2923 0 0 0 0 0 Nucleus 1 0.500231643534598 1 0.999536712930803 hm5C_site_6130 DeepMRMD:1;iRNA_m5C:0.999536712930803 6131 chr1 62628416 62628416 1 + C T rs540058706 62628431 + 62628411 62628451 41 GAGTTCGAGACCAGCCTGGCCAATATGGTGAAACCCTGTCT GAGTTTGAGACCAGCCTGGCCAATATGGTGAAACCCTGTCT < 41bp 1 0.345948726201525 1 0.403153866529465 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PATJ ENSG00000132849 UTR3 Human protein_coding chr1:62628431 chr1:62628416 . . 0 6 hm5C_associated_SNPs_2924 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6131 DeepMRMD:1;iRNA_m5C:0.999536712157815 6132 chr1 63989296 63989296 1 + C T rs144554384 63989283 + 63989263 63989303 41 GAAGAGAATTGGCTGCGCTTCCTTGTTTGTGAGCTAGAATT GAAGAGAATTGGCTGCGCTTCCTTGTTTGTGAGTTAGAATT < 41bp 1 0.3084406420205 1 0.0348337292671204 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFCAB7 ENSG00000203965 UTR5 Human protein_coding chr1:63989283 chr1:63989296 . . 0 34 hm5C_associated_SNPs_2926 0 0 0 0 1 Cytosol 1 0.500231643957178 1 0.999536712085644 hm5C_site_6132 DeepMRMD:1;iRNA_m5C:0.999536712085644 6133 chr1 63989296 63989296 1 + C T rs144554384 63989284 + 63989264 63989304 41 AAGAGAATTGGCTGCGCTTCCTTGTTTGTGAGCTAGAATTA AAGAGAATTGGCTGCGCTTCCTTGTTTGTGAGTTAGAATTA < 41bp 1 0.612611854604266 1 0.129309922456741 experiment 0.774776290791469 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFCAB7 ENSG00000203965 UTR5 Human protein_coding chr1:63989284 chr1:63989296 . . 0 33 hm5C_associated_SNPs_2927 0 0 0 0 1 Cytosol 1 0.500231637468127 1 0.999536725063746 hm5C_site_6133 DeepMRMD:1;iRNA_m5C:0.999536725063746 6134 chr1 64125368 64125368 1 + C T rs8294 64125357 + 64125337 64125377 41 CATCACCTAAGAAGACAGGCCTGATGTGGTACGTCCCTCCA CATCACCTAAGAAGACAGGCCTGATGTGGTATGTCCCTCCA < 41bp 1 0.590843263908459 1 0.26606959104538 experiment 0.818313472183081 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGM1 ENSG00000079739 UTR3 Human protein_coding chr1:64125357 chr1:64125368 . . 0 32 hm5C_associated_SNPs_2929 2 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_6134 DeepMRMD:1;iRNA_m5C:0.999536712157816 Congenital disorder of glycosylation Congenital disorder of glycosylation 6135 chr1 65147703 65147703 1 + T A rs575428264 65147716 + 65147696 65147736 41 ACTCGGTTTATAGCTGCGGTCATCGAACGACATGCACACAG ACTCGGTATATAGCTGCGGTCATCGAACGACATGCACACAG < 41bp 1 0.402512757301535 1 0.200894594192505 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147716 chr1:65147703 nonsynonymous SNV 0.994 1 8 hm5C_associated_SNPs_2930 0 0 0 0 2 unknown 1 0.500231644052751 1 0.999536711894498 hm5C_site_6135 DeepMRMD:1;iRNA_m5C:0.999536711894498 6136 chr1 65147722 65147722 1 + A G rs140096828 65147716 + 65147696 65147736 41 ACTCGGTTTATAGCTGCGGTCATCGAACGACATGCACACAG ACTCGGTTTATAGCTGCGGTCATCGAGCGACATGCACACAG < 41bp 1 0.415686866899522 1 0.266761392354965 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147716 chr1:65147722 synonymous SNV . 0 27 hm5C_associated_SNPs_2931 0 0 0 0 2 unknown 1 0.500231643702023 1 0.999536712595953 hm5C_site_6136 DeepMRMD:1;iRNA_m5C:0.999536712595953 6137 chr1 65210972 65210972 1 + G A rs149969748 65210985 + 65210965 65211005 41 CGCACGAGGGCGCCCCGGACCCGATGCCCGCCGCGCTGCAC CGCACGAAGGCGCCCCGGACCCGATGCCCGCCGCGCTGCAC < 41bp 1 0.582630699441107 1 0.398282021284103 experiment 0.834738601117785 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAVER2 ENSG00000162437 CDS Human protein_coding chr1:65210985 chr1:65210972 synonymous SNV . 0 8 hm5C_associated_SNPs_2932 0 0 1 0 0 Ribosome 1 0.500231643923599 1 0.999536712152803 hm5C_site_6137 DeepMRMD:1;iRNA_m5C:0.999536712152803 6138 chr1 65871776 65871776 1 + T C rs61733018 65871792 + 65871772 65871812 41 TGCCTGGGGGCCAGAACGAACGTGGGAAAGGATCAAGTAAT TGCCCGGGGGCCAGAACGAACGTGGGAAAGGATCAAGTAAT < 41bp 1 0.572140504144428 1 0.408974289894104 experiment 0.855718991711143 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871792 chr1:65871776 synonymous SNV . 0 5 hm5C_associated_SNPs_2933 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6138 DeepMRMD:1;iRNA_m5C:0.999536712157815 6139 chr1 67451279 67451279 1 + A G rs190115741 67451278 + 67451258 67451298 41 TTTGAAAGATTTTTACAGTACATATGTCTTGACTGAGCTGT TTTGAAAGATTTTTACAGTACGTATGTCTTGACTGAGCTGT < 41bp 1 0.145307586867372 1 0.0536746382713318 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIER1 ENSG00000198160 UTR3 Human protein_coding chr1:67451278 chr1:67451279 . . 0 22 hm5C_associated_SNPs_2934 0 0 1 0 0 Ribosome 1 0.500231643296254 1 0.999536713407492 hm5C_site_6139 DeepMRMD:1;iRNA_m5C:0.999536713407492 6140 chr1 67451850 67451850 1 + A G rs183744278 67451868 + 67451848 67451888 41 CTAGTTACAATCCAATTTTTCAGATTTGATAATGCTTTTCC CTGGTTACAATCCAATTTTTCAGATTTGATAATGCTTTTCC < 41bp 1 0.324927978683063 1 0.312646597623825 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIER1 ENSG00000198160 UTR3 Human protein_coding chr1:67451868 chr1:67451850 . . 0 3 hm5C_associated_SNPs_2935 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6140 DeepMRMD:1;iRNA_m5C:0.999536712157815 6141 chr1 70700416 70700416 1 + C G rs144286981 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGGCTGCTTTGGGGGCTCCTAGTCTTGATCCTGCCCTT < 41bp 1 0.455865092130082 1 0.21676903963089 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700416 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_2938 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6141 DeepMRMD:1;iRNA_m5C:0.999536712157815 6142 chr1 70716742 70716742 1 + A G rs536139755 70716724 + 70716704 70716744 41 TGAGTAACCAAGCAGTTTTACTATTCTGGTGCTGCTTCATA TGAGTAACCAAGCAGTTTTACTATTCTGGTGCTGCTTCGTA < 41bp 1 0.178936886512813 1 0.028674453496933 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SRSF11 ENSG00000116754 UTR3 Human protein_coding chr1:70716724 chr1:70716742 . . 0 39 hm5C_associated_SNPs_2939 0 0 1 0 0 Nucleus 1 0.500232173034885 1 0.99953565393023 hm5C_site_6142 DeepMRMD:1;iRNA_m5C:0.99953565393023 6143 chr1 75214441 75214441 1 + A G rs1133891 75214439 + 75214419 75214459 41 TTTTATTTTCTTACAGCATTCCATGGCAATAGATTCTGGTT TTTTATTTTCTTACAGCATTCCGTGGCAATAGATTCTGGTT < 41bp 1 0.216088895804569 1 0.586026906967163 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TYW3 ENSG00000162623 CDS Human protein_coding chr1:75214439 chr1:75214441 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_2940 0 0 1 0 2 chromatin 1 0.500231643572909 0.827946186065674 0.999536712854182 hm5C_site_6143 DeepMRMD:0.827946186065674;iRNA_m5C:0.999536712854182 6144 chr1 75214441 75214441 1 + A G rs1133891 75214440 + 75214420 75214460 41 TTTATTTTCTTACAGCATTCCATGGCAATAGATTCTGGTTT TTTATTTTCTTACAGCATTCCGTGGCAATAGATTCTGGTTT < 41bp 1 0.350822486308169 1 0.450814247131348 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TYW3 ENSG00000162623 CDS Human protein_coding chr1:75214440 chr1:75214441 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_2941 0 0 1 0 2 chromatin 1 0.5002316439245 1 0.999536712151 hm5C_site_6144 DeepMRMD:1;iRNA_m5C:0.999536712151 6145 chr1 76253229 76253229 1 + T A rs3737573 76253245 + 76253225 76253265 41 ACACTTTGTTATTGGAGAAACATGCAGATTATATCGCATCC ACACATTGTTATTGGAGAAACATGCAGATTATATCGCATCC < 41bp 1 0.34928221048198 1 0.25756961107254 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253245 chr1:76253229 synonymous SNV . 0 5 hm5C_associated_SNPs_2942 0 0 1 0 2 Nucleus 1 0.50023164428005 1 0.9995367114399 hm5C_site_6145 DeepMRMD:1;iRNA_m5C:0.9995367114399 6146 chr1 76253607 76253607 1 + C T rs189490979 76253601 + 76253581 76253621 41 GATGTGTTGGCATGTATTATCTGAATCTATTGCTGATGTGT GATGTGTTGGCATGTATTATCTGAATTTATTGCTGATGTGT < 41bp 1 0.623478187521022 1 0.296581655740738 experiment 0.753043624957956 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD45A ENSG00000207241 ncRNA_exonic Human snoRNA chr1:76253601 chr1:76253607 . . 0 27 hm5C_associated_SNPs_2943 0 0 1 0 0 unknown 1 0.500229573782472 1 0.999540852435056 hm5C_site_6146 DeepMRMD:1;iRNA_m5C:0.999540852435056 6147 chr1 76253607 76253607 1 + C T rs189490979 76253613 + 76253593 76253633 41 TGTATTATCTGAATCTATTGCTGATGTGTAATAACACTTTA TGTATTATCTGAATTTATTGCTGATGTGTAATAACACTTTA < 41bp 1 0.327048223995966 1 0.0638850629329681 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD45A ENSG00000207241 ncRNA_exonic Human snoRNA chr1:76253613 chr1:76253607 . . 0 15 hm5C_associated_SNPs_2944 0 0 1 0 0 unknown 1 0.500231648184914 1 0.999536703630171 hm5C_site_6147 DeepMRMD:1;iRNA_m5C:0.999536703630171 6148 chr1 76255228 76255228 1 + G A rs11161620 76255231 + 76255211 76255251 41 TTCTAAAATTACACTGAGACCTTGGAGGGTAAAATTTTTAT TTCTAAAATTACACTGAAACCTTGGAGGGTAAAATTTTTAT < 41bp 1 0.327661267687452 1 0.217123329639435 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD45B ENSG00000201487 ncRNA_exonic Human snoRNA chr1:76255231 chr1:76255228 . . 0 18 hm5C_associated_SNPs_2945 0 1 1 0 0 unknown 1 0.500231643917264 1 0.999536712165472 hm5C_site_6148 DeepMRMD:1;iRNA_m5C:0.999536712165472 6149 chr1 78001570 78001570 1 + G A rs151295675 78001588 + 78001568 78001608 41 TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCG TCAGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCG < 41bp 1 0.15343936288478 1 0.0525141954421997 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001588 chr1:78001570 synonymous SNV . 0 3 hm5C_associated_SNPs_2946 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6149 DeepMRMD:1;iRNA_m5C:0.999536712157815 6150 chr1 78470893 78470893 1 + G A rs148334107 78470892 + 78470872 78470912 41 ACAAGCCCTCAAATTTCATCCGGACAAGAACAAATCTCCTC ACAAGCCCTCAAATTTCATCCAGACAAGAACAAATCTCCTC < 41bp 1 0.364088940439529 1 0.426190912723541 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJB4 ENSG00000162616 CDS Human protein_coding chr1:78470892 chr1:78470893 synonymous SNV . 0 22 hm5C_associated_SNPs_2947 0 0 1 0 0 nucleoplasm 1 0.500231643920659 1 0.999536712158682 hm5C_site_6150 DeepMRMD:1;iRNA_m5C:0.999536712158682 6151 chr1 86046594 86046594 1 + G T rs561065476 86046589 + 86046569 86046609 41 CCGCCACCCCGACCCCGCTGCGCACGGCCTGTCCGCTGCAC CCGCCACCCCGACCCCGCTGCGCACTGCCTGTCCGCTGCAC < 41bp 1 0.530309884768434 1 0.152325659990311 experiment 0.939380230463132 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYR61 ENSG00000142871 UTR5 Human protein_coding chr1:86046589 chr1:86046594 . . 0 26 hm5C_associated_SNPs_2948 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921072 1 0.999536712157856 hm5C_site_6151 DeepMRMD:1;iRNA_m5C:0.999536712157856 6152 chr1 86046600 86046600 1 + T A rs140723277 86046589 + 86046569 86046609 41 CCGCCACCCCGACCCCGCTGCGCACGGCCTGTCCGCTGCAC CCGCCACCCCGACCCCGCTGCGCACGGCCTGACCGCTGCAC < 41bp 1 0.532055179797624 1 0.266566753387451 experiment 0.935889640404751 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYR61 ENSG00000142871 UTR5 Human protein_coding chr1:86046589 chr1:86046600 . . 0 32 hm5C_associated_SNPs_2949 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921125 1 0.99953671215775 hm5C_site_6152 DeepMRMD:1;iRNA_m5C:0.99953671215775 6153 chr1 86047592 86047592 1 + C G rs9658585 86047608 + 86047588 86047628 41 TTCTCTTTTGGTGATCTTTGCAGCTCAGTCAGAGGGCAGAC TTCTGTTTTGGTGATCTTTGCAGCTCAGTCAGAGGGCAGAC < 41bp 1 0.268113016705559 1 0.171792179346085 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYR61 ENSG00000142871 intronic Human protein_coding chr1:86047608 chr1:86047592 . . 0 5 hm5C_associated_SNPs_2950 0 0 1 0 0 Endoplasmic reticulum 1 0.500231658793934 1 0.999536682412131 hm5C_site_6153 DeepMRMD:1;iRNA_m5C:0.999536682412131 6154 chr1 86048579 86048579 1 + C A rs9658587 86048568 + 86048548 86048588 41 CACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCT CACGCCCCAGCTGACCAGGACTGTGAAGATGAGGTTCCGCT < 41bp 1 0.207802106452502 1 0.0363798439502716 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048568 chr1:86048579 synonymous SNV 1.000 0 32 hm5C_associated_SNPs_2951 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921097 1 0.999536712157807 hm5C_site_6154 DeepMRMD:1;iRNA_m5C:0.999536712157807 6155 chr1 86048579 86048579 1 + C A rs9658587 86048584 + 86048564 86048604 41 AGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGAC AGGACTGTGAAGATGAGGTTCCGCTGCGAAGATGGGGAGAC < 41bp 1 0.391546928004598 1 0.147900432348251 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048584 chr1:86048579 synonymous SNV 1.000 0 16 hm5C_associated_SNPs_2952 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_6155 DeepMRMD:1;iRNA_m5C:0.999536712157815 6156 chr1 86048579 86048579 1 + C A rs9658587 86048585 + 86048565 86048605 41 GGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGACA GGACTGTGAAGATGAGGTTCCGCTGCGAAGATGGGGAGACA < 41bp 1 0.436855002869636 1 0.18757438659668 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048585 chr1:86048579 synonymous SNV 1.000 0 15 hm5C_associated_SNPs_2953 0 0 1 0 0 Endoplasmic reticulum 1 0.500228934419567 1 0.999542131160866 hm5C_site_6156 DeepMRMD:1;iRNA_m5C:0.999542131160866 6157 chr1 87794719 87794719 1 + G A rs182851533 87794724 + 87794704 87794744 41 CCGGCACTTACGCGGGGGCCCCCCAACCCGCCCCAGAGCAA CCGGCACTTACGCGGAGGCCCCCCAACCCGCCCCAGAGCAA < 41bp 1 0.559718024116626 1 0.403112679719925 experiment 0.880563951766747 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LMO4 ENSG00000143013 UTR5 Human protein_coding chr1:87794724 chr1:87794719 . . 0 16 hm5C_associated_SNPs_2955 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6157 DeepMRMD:1;iRNA_m5C:0.999536712157815 6158 chr1 87794719 87794719 1 + G A rs182851533 87794726 + 87794706 87794746 41 GGCACTTACGCGGGGGCCCCCCAACCCGCCCCAGAGCAACG GGCACTTACGCGGAGGCCCCCCAACCCGCCCCAGAGCAACG < 41bp 1 0.183669789343835 1 0.41621321439743 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LMO4 ENSG00000143013 UTR5 Human protein_coding chr1:87794726 chr1:87794719 . . 0 14 hm5C_associated_SNPs_2956 0 0 1 0 0 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_6158 DeepMRMD:1;iRNA_m5C:0.99953671215781 6159 chr1 91980461 91980461 1 + G A rs141732646 91980446 + 91980426 91980466 41 AAAAAAGAAGGCTATTTCTACAAAAGTTATGAATAGTGCTG AAAAAAGAAGGCTATTTCTACAAAAGTTATGAATAATGCTG < 41bp 1 0.646899924713888 1 0.239128202199936 experiment 0.706200150572223 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC7 ENSG00000097046 CDS Human protein_coding chr1:91980446 chr1:91980461 nonsynonymous SNV 0.878 1 36 hm5C_associated_SNPs_2958 0 0 1 0 1 Nucleus 1 0.500231650660018 1 0.999536698679965 hm5C_site_6159 DeepMRMD:1;iRNA_m5C:0.999536698679965 6160 chr1 93297610 93297610 1 + C A rs368663464 93297617 + 93297597 93297637 41 CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGGTCTCT CCTTTTCCCACCCACTAGCGCCGCTGGGCCTGCAGGTCTCT < 41bp 1 0.329539026085926 1 0.0492813587188721 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control RPL5 ENSG00000122406 UTR5 Human protein_coding chr1:93297617 chr1:93297610 . . 0 14 hm5C_associated_SNPs_2959 0 0 1 0 1 Cytosol 1 0.500231643921055 1 0.999536712157891 hm5C_site_6160 DeepMRMD:1;iRNA_m5C:0.999536712157891 6161 chr1 93297620 93297620 1 + C G rs143326916 93297617 + 93297597 93297637 41 CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGGTCTCT CCTTTTCCCACCCCCTAGCGCCGGTGGGCCTGCAGGTCTCT < 41bp 1 0.57385647532953 1 0.296470433473587 experiment 0.85228704934094 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control RPL5 ENSG00000122406 UTR5 Human protein_coding chr1:93297617 chr1:93297620 . . 0 24 hm5C_associated_SNPs_2960 1 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6161 DeepMRMD:1;iRNA_m5C:0.999536712157815 Diamond-Blackfan anemia Diamond-Blackfan anemia 6162 chr1 93297630 93297630 1 + A C rs145634330 93297617 + 93297597 93297637 41 CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGGTCTCT CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCCGGTCTCT < 41bp 1 0.399073654187168 1 0.0635941326618195 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control RPL5 ENSG00000122406 UTR5 Human protein_coding chr1:93297617 chr1:93297630 . . 0 34 hm5C_associated_SNPs_2961 1 0 1 0 1 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_6162 DeepMRMD:1;iRNA_m5C:0.999536712157806 Diamond-Blackfan anemia Diamond-Blackfan anemia 6163 chr1 93297632 93297632 1 + G A rs569209548 93297617 + 93297597 93297637 41 CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGGTCTCT CCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGATCTCT < 41bp 1 0.335893733351615 1 0.0633766949176788 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control RPL5 ENSG00000122406 UTR5 Human protein_coding chr1:93297617 chr1:93297632 . . 0 36 hm5C_associated_SNPs_2962 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6163 DeepMRMD:1;iRNA_m5C:0.999536712157815 6164 chr1 93302919 93302919 1 + T C rs77093817 93302899 + 93302879 93302919 41 AGTAGTTGGTCCTTTGGTTGCATATGATGCGATAATTGTTT AGTAGTTGGTCCTTTGGTTGCATATGATGCGATAATTGTTC < 41bp 1 0.0993475557847401 1 0.254331529140472 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD21 ENSG00000206680 ncRNA_exonic Human snoRNA chr1:93302899 chr1:93302919 . . 0 41 hm5C_associated_SNPs_2963 0 0 1 0 0 unknown 1 0.500231644183024 1 0.999536711633952 hm5C_site_6164 DeepMRMD:1;iRNA_m5C:0.999536711633952 6165 chr1 93302919 93302919 1 + T C rs77093817 93302908 + 93302888 93302928 41 TCCTTTGGTTGCATATGATGCGATAATTGTTTCAAGACGGG TCCTTTGGTTGCATATGATGCGATAATTGTTCCAAGACGGG < 41bp 1 0.196921076084825 1 0.346077442169189 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD21 ENSG00000206680 ncRNA_exonic Human snoRNA chr1:93302908 chr1:93302919 . . 0 32 hm5C_associated_SNPs_2964 0 0 1 0 0 unknown 1 0.500231643921102 1 0.999536712157796 hm5C_site_6165 DeepMRMD:1;iRNA_m5C:0.999536712157796 6166 chr1 93302919 93302919 1 + T C rs77093817 93302920 + 93302900 93302940 41 ATATGATGCGATAATTGTTTCAAGACGGGACTGATGGCAGC ATATGATGCGATAATTGTTCCAAGACGGGACTGATGGCAGC < 41bp 1 0.5042460922548 1 0.718651354312897 experiment 0.991507815490401 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD21 ENSG00000206680 ncRNA_exonic Human snoRNA chr1:93302920 chr1:93302919 . . 0 20 hm5C_associated_SNPs_2965 0 0 1 0 0 unknown 1 0.500231590565477 0.562697291374206 0.999536818869046 hm5C_site_6166 DeepMRMD:0.562697291374206;iRNA_m5C:0.999536818869046 6167 chr1 93302919 93302919 1 + T C rs77093817 93302930 + 93302910 93302950 41 ATAATTGTTTCAAGACGGGACTGATGGCAGCTACTAAAGTA ATAATTGTTCCAAGACGGGACTGATGGCAGCTACTAAAGTA < 41bp 1 0.120450167903095 1 0.0968059003353119 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD21 ENSG00000206680 ncRNA_exonic Human snoRNA chr1:93302930 chr1:93302919 . . 0 10 hm5C_associated_SNPs_2967 0 0 1 0 0 unknown 1 0.500231643914559 1 0.999536712170882 hm5C_site_6167 DeepMRMD:1;iRNA_m5C:0.999536712170882 6168 chr1 93306281 93306281 1 + A G rs115931438 93306297 + 93306277 93306317 41 TGCAAACTCGATCACTAGCTCTGCGTGATGTGGCAGAAGCG TGCAGACTCGATCACTAGCTCTGCGTGATGTGGCAGAAGCG < 41bp 1 0.423531238415269 1 0.626516699790955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA66 ENSG00000207523 ncRNA_exonic Human snoRNA chr1:93306297 chr1:93306281 . . 0 5 hm5C_associated_SNPs_2968 0 0 1 0 0 unknown 1 0.500231649232536 0.74696660041809 0.999536701534928 hm5C_site_6168 DeepMRMD:0.74696660041809;iRNA_m5C:0.999536701534928 6169 chr1 93306300 93306300 1 + C T rs183472088 93306297 + 93306277 93306317 41 TGCAAACTCGATCACTAGCTCTGCGTGATGTGGCAGAAGCG TGCAAACTCGATCACTAGCTCTGTGTGATGTGGCAGAAGCG < 41bp 1 0.222986037682465 1 0.474826514720917 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA66 ENSG00000207523 ncRNA_exonic Human snoRNA chr1:93306297 chr1:93306300 . . 0 24 hm5C_associated_SNPs_2969 0 0 1 0 0 unknown 1 0.500231703030721 1 0.999536593938557 hm5C_site_6169 DeepMRMD:1;iRNA_m5C:0.999536593938557 6170 chr1 93306317 93306317 1 + G A rs10874744 93306297 + 93306277 93306317 41 TGCAAACTCGATCACTAGCTCTGCGTGATGTGGCAGAAGCG TGCAAACTCGATCACTAGCTCTGCGTGATGTGGCAGAAGCA < 41bp 1 0.395552631897164 1 0.613755404949188 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA66 ENSG00000207523 ncRNA_exonic Human snoRNA chr1:93306297 chr1:93306317 . . 0 41 hm5C_associated_SNPs_2970 1 0 1 1 0 unknown 1 0.500231692960749 0.772489190101624 0.999536614078502 hm5C_site_6170 DeepMRMD:0.772489190101624;iRNA_m5C:0.999536614078502 Diamond-Blackfan anemia Diamond-Blackfan anemia 6171 chr1 93307423 93307423 1 + A G rs11540833 93307419 + 93307399 93307439 41 CAGGAGCGGGCTGCTGAGAGCTAAACCCAGCAATTTTCTAT CAGGAGCGGGCTGCTGAGAGCTAAGCCCAGCAATTTTCTAT < 41bp 1 0.329967296720746 1 0.175529181957245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL5 ENSG00000122406 UTR3 Human protein_coding chr1:93307419 chr1:93307423 . . 0 25 hm5C_associated_SNPs_2971 0 0 1 4 0 Cytosol 1 0.500231643927148 1 0.999536712145703 hm5C_site_6171 DeepMRMD:1;iRNA_m5C:0.999536712145703 6172 chr1 93812081 93812081 1 + C T rs111741199 93812080 + 93812060 93812100 41 CCTCCGTTCATTTTCTGCACCCTCTTCGCAAAGCACCCCCC CCTCCGTTCATTTTCTGCACCTTCTTCGCAAAGCACCCCCC < 41bp 1 0.400086774426312 1 0.033464640378952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DR1 ENSG00000117505 UTR5 Human protein_coding chr1:93812080 chr1:93812081 . . 0 22 hm5C_associated_SNPs_2972 0 0 1 0 0 Cytosol 1 0.500231643921131 1 0.999536712157738 hm5C_site_6172 DeepMRMD:1;iRNA_m5C:0.999536712157738 6173 chr1 93812081 93812081 1 + C T rs111741199 93812086 + 93812066 93812106 41 TTCATTTTCTGCACCCTCTTCGCAAAGCACCCCCCGGGATC TTCATTTTCTGCACCTTCTTCGCAAAGCACCCCCCGGGATC < 41bp 1 0.64561851032948 1 0.50742644071579 experiment 0.70876297934104 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DR1 ENSG00000117505 UTR5 Human protein_coding chr1:93812086 chr1:93812081 . . 0 16 hm5C_associated_SNPs_2973 0 0 1 0 0 Cytosol 1 0.500231643921092 0.98514711856842 0.999536712157815 hm5C_site_6173 DeepMRMD:0.98514711856842;iRNA_m5C:0.999536712157815 6174 chr1 93812081 93812081 1 + C T rs111741199 93812093 + 93812073 93812113 41 TCTGCACCCTCTTCGCAAAGCACCCCCCGGGATCACTCTCC TCTGCACCTTCTTCGCAAAGCACCCCCCGGGATCACTCTCC < 41bp 1 0.530381290304352 1 0.0326409637928009 experiment 0.939237419391296 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DR1 ENSG00000117505 UTR5 Human protein_coding chr1:93812093 chr1:93812081 . . 0 9 hm5C_associated_SNPs_2974 0 0 1 0 0 Cytosol 1 0.5002316439211 1 0.9995367121578 hm5C_site_6174 DeepMRMD:1;iRNA_m5C:0.9995367121578 6175 chr1 93826455 93826455 1 + G A rs8561 93826454 + 93826434 93826474 41 TATGAAATTTTAGATAGCAGCGAGTCCTTCGTTTGATCAAT TATGAAATTTTAGATAGCAGCAAGTCCTTCGTTTGATCAAT < 41bp 1 0.332533194331685 1 0.378315627574921 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DR1 ENSG00000117505 UTR3 Human protein_coding chr1:93826454 chr1:93826455 . . 0 22 hm5C_associated_SNPs_2975 0 0 1 0 0 Cytosol 1 0.500231643922532 1 0.999536712154935 hm5C_site_6175 DeepMRMD:1;iRNA_m5C:0.999536712154935 6176 chr1 94883999 94883999 1 + G A rs72559438 94883994 + 94883974 94884014 41 GGTAGCCGCCGCCGCCGCCGCCGCCGCGTCCCCTCGCCGGC GGTAGCCGCCGCCGCCGCCGCCGCCACGTCCCCTCGCCGGC < 41bp 1 0.657774087604973 1 0.727573752403259 experiment 0.684451824790055 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCD3 ENSG00000117528 UTR5 Human protein_coding chr1:94883994 chr1:94883999 . . 0 26 hm5C_associated_SNPs_2976 0 0 0 0 0 Nucleus 1 0.500231643921161 0.544852495193482 0.999536712157678 hm5C_site_6176 DeepMRMD:0.544852495193482;iRNA_m5C:0.999536712157678 6177 chr1 94953157 94953157 1 + T C rs139507691 94953142 + 94953122 94953162 41 TTGTTTCGGTTTTCAATGGGCTTCATTGATAGTATTATTGC TTGTTTCGGTTTTCAATGGGCTTCATTGATAGTATCATTGC < 41bp 1 0.424571492631653 1 0.134978860616684 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94953142 chr1:94953157 synonymous SNV . 0 36 hm5C_associated_SNPs_2978 0 0 1 0 2 Nucleus 1 0.500231644482242 1 0.999536711035515 hm5C_site_6177 DeepMRMD:1;iRNA_m5C:0.999536711035515 6178 chr1 100740485 100740485 1 + T C rs116538743 100740467 + 100740447 100740487 41 ATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATATGG ATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATACGG < 41bp 1 0.263087040549674 1 0.176771849393845 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100740467 chr1:100740485 synonymous SNV . 0 39 hm5C_associated_SNPs_2979 0 0 1 0 1 Ribosome 1 0.500231643921257 1 0.999536712157486 hm5C_site_6178 DeepMRMD:1;iRNA_m5C:0.999536712157486 6179 chr1 107599889 107599889 1 + C G rs369781877 107599880 + 107599860 107599900 41 ACCAAGTGGCTGAAGGAGGGCGGTCTTCTCCTGCCGGCCTC ACCAAGTGGCTGAAGGAGGGCGGTCTTCTGCTGCCGGCCTC < 41bp 1 0.558214134217244 1 0.427685916423798 experiment 0.883571731565513 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRMT6 ENSG00000198890 CDS Human protein_coding chr1:107599880 chr1:107599889 synonymous SNV . 0 30 hm5C_associated_SNPs_2980 0 0 0 0 0 Ribosome 1 0.500231644130408 1 0.999536711739185 hm5C_site_6179 DeepMRMD:1;iRNA_m5C:0.999536711739185 6180 chr1 109170871 109170871 1 + G T rs144437284 109170852 + 109170832 109170872 41 CTGTGGACATTCTAGAACATCAAGCTATGCAAGTCAGCAGT CTGTGGACATTCTAGAACATCAAGCTATGCAAGTCAGCATT < 41bp 1 0.589419502275471 1 0.473174840211868 experiment 0.821160995449059 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM102B ENSG00000162636 CDS Human protein_coding chr1:109170852 chr1:109170871 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_2981 0 0 0 0 2 Ribosome 1 0.50023164494657 1 0.999536710106859 hm5C_site_6180 DeepMRMD:1;iRNA_m5C:0.999536710106859 6181 chr1 109181451 109181451 1 + G A rs147535154 109181446 + 109181426 109181466 41 AAAGGCCTTATTCCCTTACACATGCGATTTTTGTAAGATAA AAAGGCCTTATTCCCTTACACATGCAATTTTTGTAAGATAA < 41bp 1 0.163323838769904 1 0.24698480963707 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM102B ENSG00000162636 UTR3 Human protein_coding chr1:109181446 chr1:109181451 . . 0 26 hm5C_associated_SNPs_2982 0 0 1 0 0 Ribosome 1 0.500260353456777 1 0.999479293086447 hm5C_site_6181 DeepMRMD:1;iRNA_m5C:0.999479293086447 6182 chr1 109325301 109325301 1 + A G rs201792987 109325284 + 109325264 109325304 41 TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCATCA TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCGTCA < 41bp 1 0.199584564891104 1 0.0809610784053802 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109325284 chr1:109325301 synonymous SNV . 0 38 hm5C_associated_SNPs_2983 0 0 1 1 2 Nucleus 1 0.5002316309189 1 0.9995367381622 hm5C_site_6182 DeepMRMD:1;iRNA_m5C:0.9995367381622 6183 chr1 109474715 109474715 1 + T C rs12138815 109474704 - 109474684 109474724 41 TGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTG TGGGGTTTCGCCATGTTGGTCAGGCTGGTCTCGAACTCCTG < 41bp 1 0.571865887138824 1 0.408850789070129 experiment 0.856268225722352 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control CLCC1;GPSM2 ENSG00000121940;ENSG00000121957 UTR3 Human other chr1:109474704 chr1:109474715 . . 0 10 hm5C_associated_SNPs_2985 0 0 0 0 0 unknown 1 0.500233800409842 1 0.999532399180316 hm5C_site_6183 DeepMRMD:1;iRNA_m5C:0.999532399180316 6184 chr1 109474715 109474715 1 + T C rs12138815 109474713 - 109474693 109474733 41 TAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTC TAGTAGAGATGGGGTTTCGCCATGTTGGTCAGGCTGGTCTC < 41bp 1 0.609016630291222 1 0.511676847934723 experiment 0.781966739417556 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CLCC1;GPSM2 ENSG00000121940;ENSG00000121957 UTR3 Human other chr1:109474713 chr1:109474715 . . 0 19 hm5C_associated_SNPs_2986 0 0 0 0 0 unknown 1 0.500231643921093 0.976646304130554 0.999536712157814 hm5C_site_6184 DeepMRMD:0.976646304130554;iRNA_m5C:0.999536712157814 6185 chr1 109474715 109474715 1 + T C rs12138815 109474714 - 109474694 109474734 41 TTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCT TTAGTAGAGATGGGGTTTCGCCATGTTGGTCAGGCTGGTCT < 41bp 1 0.349311205911734 1 0.370426177978516 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CLCC1;GPSM2 ENSG00000121940;ENSG00000121957 UTR3 Human other chr1:109474714 chr1:109474715 . . 0 20 hm5C_associated_SNPs_2987 0 0 0 0 0 unknown 1 0.500231643924826 1 0.999536712150348 hm5C_site_6185 DeepMRMD:1;iRNA_m5C:0.999536712150348 6186 chr1 109801286 109801286 1 + C T rs201291428 109801267 + 109801247 109801287 41 CGTACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCA CGTACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTTA < 41bp 1 0.0737217883043834 1 0.0676095485687256 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801267 chr1:109801286 synonymous SNV . 0 40 hm5C_associated_SNPs_2988 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643923299 1 0.999536712153402 hm5C_site_6186 DeepMRMD:1;iRNA_m5C:0.999536712153402 6187 chr1 109801286 109801286 1 + C T rs201291428 109801268 + 109801248 109801288 41 GTACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCAA GTACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTTAA < 41bp 1 0.28340788021354 1 0.571582913398743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801268 chr1:109801286 synonymous SNV . 0 39 hm5C_associated_SNPs_2989 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643945574 0.856834173202514 0.999536712108851 hm5C_site_6187 DeepMRMD:0.856834173202514;iRNA_m5C:0.999536712108851 6188 chr1 109801286 109801286 1 + C T rs201291428 109801269 + 109801249 109801289 41 TACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCAAC TACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTTAAC < 41bp 1 0.286536870764748 1 0.461908608675003 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801269 chr1:109801286 synonymous SNV . 0 38 hm5C_associated_SNPs_2990 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643933431 1 0.999536712133137 hm5C_site_6188 DeepMRMD:1;iRNA_m5C:0.999536712133137 6189 chr1 109801286 109801286 1 + C T rs201291428 109801270 + 109801250 109801290 41 ACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCAACG ACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTTAACG < 41bp 1 0.387017650699302 1 0.652595937252045 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801270 chr1:109801286 synonymous SNV . 0 37 hm5C_associated_SNPs_2991 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643923739 0.69480812549591 0.999536712152522 hm5C_site_6189 DeepMRMD:0.69480812549591;iRNA_m5C:0.999536712152522 6190 chr1 109801286 109801286 1 + C T rs201291428 109801271 + 109801251 109801291 41 CAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCAACGT CAGCGGGACACCGACGCCCCCGGGGGCCACATCCTTAACGT < 41bp 1 0.686632804878714 1 0.862538933753967 experiment 0.626734390242572 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801271 chr1:109801286 synonymous SNV . 0 36 hm5C_associated_SNPs_2992 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.274922132492066 0.999536712157815 hm5C_site_6190 DeepMRMD:0.274922132492066;iRNA_m5C:0.999536712157815 6191 chr1 109801337 109801337 1 + C T rs556593359 109801320 + 109801300 109801340 41 CGGTGGGCCAGCCGCCAGGGCCCGGGGGCGGGCCGCCCTTC CGGTGGGCCAGCCGCCAGGGCCCGGGGGCGGGCCGCCTTTC < 41bp 1 0.478315574018417 1 0.846319198608398 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801320 chr1:109801337 synonymous SNV . 0 38 hm5C_associated_SNPs_2993 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.307361602783204 0.999536712157815 hm5C_site_6191 DeepMRMD:0.307361602783204;iRNA_m5C:0.999536712157815 6192 chr1 109801337 109801337 1 + C T rs556593359 109801321 + 109801301 109801341 41 GGTGGGCCAGCCGCCAGGGCCCGGGGGCGGGCCGCCCTTCC GGTGGGCCAGCCGCCAGGGCCCGGGGGCGGGCCGCCTTTCC < 41bp 1 0.594618776240393 1 0.911846518516541 experiment 0.810762447519214 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801321 chr1:109801337 synonymous SNV . 0 37 hm5C_associated_SNPs_2994 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921098 0.176306962966918 0.999536712157804 hm5C_site_6192 DeepMRMD:0.176306962966918;iRNA_m5C:0.999536712157804 6193 chr1 109801337 109801337 1 + C T rs556593359 109801328 + 109801308 109801348 41 CAGCCGCCAGGGCCCGGGGGCGGGCCGCCCTTCCTGCCCTC CAGCCGCCAGGGCCCGGGGGCGGGCCGCCTTTCCTGCCCTC < 41bp 1 0.294493778988285 1 0.860920071601868 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801328 chr1:109801337 synonymous SNV . 0 30 hm5C_associated_SNPs_2996 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.278159856796264 0.999536712157815 hm5C_site_6193 DeepMRMD:0.278159856796264;iRNA_m5C:0.999536712157815 6194 chr1 109801345 109801345 1 + C T rs75237799 109801328 + 109801308 109801348 41 CAGCCGCCAGGGCCCGGGGGCGGGCCGCCCTTCCTGCCCTC CAGCCGCCAGGGCCCGGGGGCGGGCCGCCCTTCCTGCTCTC < 41bp 1 0.298873247417762 1 0.80243718624115 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801328 chr1:109801345 nonsynonymous SNV 0.015 1 38 hm5C_associated_SNPs_2997 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.3951256275177 0.999536712157817 hm5C_site_6194 DeepMRMD:0.3951256275177;iRNA_m5C:0.999536712157817 6195 chr1 109806834 109806834 1 + C A rs6698843 109806832 + 109806812 109806852 41 CACTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCC CACTGGGAGCCAGCGGGGGGCCAGGCCATGCCATTCTGTCC < 41bp 1 0.123927550357103 1 0.37796539068222 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806832 chr1:109806834 synonymous SNV . 0 23 hm5C_associated_SNPs_2998 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_6195 DeepMRMD:1;iRNA_m5C:0.999536712157815 6196 chr1 109806834 109806834 1 + C A rs6698843 109806833 + 109806813 109806853 41 ACTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCCT ACTGGGAGCCAGCGGGGGGCCAGGCCATGCCATTCTGTCCT < 41bp 1 0.391096455960028 1 0.489989072084427 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806833 chr1:109806834 synonymous SNV . 0 22 hm5C_associated_SNPs_2999 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643905874 1 0.999536712188252 hm5C_site_6196 DeepMRMD:1;iRNA_m5C:0.999536712188252 6197 chr1 109811554 109811554 1 + C T rs368143806 109811544 + 109811524 109811564 41 CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGG CAAAGGGAACTTTGCTGGGGCCAAGCTGCCTCGCTACGAGG < 41bp 1 0.0389080059575621 1 0.0776008367538452 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811544 chr1:109811554 synonymous SNV . 0 31 hm5C_associated_SNPs_3000 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_6197 DeepMRMD:1;iRNA_m5C:0.999536712157815 6198 chr1 109811554 109811554 1 + C T rs368143806 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCTCGCTACGAGGCCCTGCGT < 41bp 1 0.084260873151751 1 0.075434535741806 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811554 synonymous SNV . 0 23 hm5C_associated_SNPs_3001 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_6198 DeepMRMD:1;iRNA_m5C:0.999536712157815 6199 chr1 109811554 109811554 1 + C T rs368143806 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCTCGCTACGAGGCCCTGCGTG < 41bp 1 0.479189482700713 1 0.385519325733185 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811554 synonymous SNV . 0 22 hm5C_associated_SNPs_3002 0 0 1 0 2 Endoplasmic reticulum 1 0.500231736701371 1 0.999536526597257 hm5C_site_6199 DeepMRMD:1;iRNA_m5C:0.999536526597257 6200 chr1 109811554 109811554 1 + C T rs368143806 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCTCGCTACGAGGCCCTGCGTGGG < 41bp 1 0.394925075508853 1 0.79572606086731 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811554 synonymous SNV . 0 20 hm5C_associated_SNPs_3003 0 0 1 0 2 Endoplasmic reticulum 1 0.500231684228999 0.40854787826538 0.999536631542002 hm5C_site_6200 DeepMRMD:0.40854787826538;iRNA_m5C:0.999536631542002 6201 chr1 109811571 109811571 1 + G A rs79850681 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCAT < 41bp 1 0.227079380529454 1 0.102236896753311 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811571 nonsynonymous SNV 0.849 0 40 hm5C_associated_SNPs_3004 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_6201 DeepMRMD:1;iRNA_m5C:0.999536712157815 6202 chr1 109811571 109811571 1 + G A rs79850681 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCATG < 41bp 1 0.230377629404351 1 0.229484468698502 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811571 nonsynonymous SNV 0.849 0 39 hm5C_associated_SNPs_3005 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921071 1 0.999536712157859 hm5C_site_6202 DeepMRMD:1;iRNA_m5C:0.999536712157859 6203 chr1 109811571 109811571 1 + G A rs79850681 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCATGG < 41bp 1 0.139049412355478 1 0.181981414556503 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811571 nonsynonymous SNV 0.849 0 38 hm5C_associated_SNPs_3006 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_6203 DeepMRMD:1;iRNA_m5C:0.999536712157815 6204 chr1 109811571 109811571 1 + G A rs79850681 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCATGGG < 41bp 1 0.294107585785711 1 0.416620969772339 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811571 nonsynonymous SNV 0.849 0 37 hm5C_associated_SNPs_3007 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921111 1 0.999536712157777 hm5C_site_6204 DeepMRMD:1;iRNA_m5C:0.999536712157777 6205 chr1 109814011 109814011 1 + G A rs141656858 109814010 + 109813990 109814030 41 GCCTGTCCCTATCCCCAGCTCGGGCCTGCAGCCCTCCTTCG GCCTGTCCCTATCCCCAGCTCAGGCCTGCAGCCCTCCTTCG < 41bp 1 0.398380929126276 1 0.748953700065613 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109814010 chr1:109814011 synonymous SNV . 0 22 hm5C_associated_SNPs_3008 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.502092599868774 0.999536712157815 hm5C_site_6205 DeepMRMD:0.502092599868774;iRNA_m5C:0.999536712157815 6206 chr1 110134777 110134777 1 + G A rs61758987 110134762 + 110134742 110134782 41 GAGATCTATACTCACTTCACCTGTGCCACAGACACGAAGAA GAGATCTATACTCACTTCACCTGTGCCACAGACACAAAGAA < 41bp 1 0.180951079795972 1 0.391375571489334 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GNAI3 ENSG00000065135 CDS Human protein_coding chr1:110134762 chr1:110134777 synonymous SNV . 0 36 hm5C_associated_SNPs_3009 0 0 1 0 0 Cytosol 1 0.500231643921902 1 0.999536712156196 hm5C_site_6206 DeepMRMD:1;iRNA_m5C:0.999536712156196 6207 chr1 110170102 110170102 1 + C T rs141396033 110170120 + 110170100 110170140 41 GACGTCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT GATGTCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT < 41bp 1 0.4803430247478 1 0.0302222073078156 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110170120 chr1:110170102 synonymous SNV . 0 3 hm5C_associated_SNPs_3010 0 0 1 0 2 Cytosol 1 0.500231643921055 1 0.999536712157889 hm5C_site_6207 DeepMRMD:1;iRNA_m5C:0.999536712157889 6208 chr1 110170103 110170103 1 + G A rs553822688 110170120 + 110170100 110170140 41 GACGTCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT GACATCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT < 41bp 1 0.426864022661766 1 0.0307740271091461 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110170120 chr1:110170103 nonsynonymous SNV 0.999 2 4 hm5C_associated_SNPs_3011 0 0 1 0 2 Cytosol 1 0.500231643921055 1 0.99953671215789 hm5C_site_6208 DeepMRMD:1;iRNA_m5C:0.99953671215789 6209 chr1 110172953 110172953 1 + G A rs201580843 110172951 + 110172931 110172971 41 TCCTCAGCTATCACCGGAATCCGCTACCGGAGTACCTGTCC TCCTCAGCTATCACCGGAATCCACTACCGGAGTACCTGTCC < 41bp 1 0.144809760067795 1 0.214054763317108 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110172951 chr1:110172953 synonymous SNV . 0 23 hm5C_associated_SNPs_3012 0 0 0 0 1 Cytosol 1 0.500231675871714 1 0.999536648256572 hm5C_site_6209 DeepMRMD:1;iRNA_m5C:0.999536648256572 6210 chr1 110472170 110472170 1 + T C rs41374153 110472171 + 110472151 110472191 41 AGTGATGCCAAGAGGGGGATCAAGCACTGGCCTCTGCCCCT AGTGATGCCAAGAGGGGGACCAAGCACTGGCCTCTGCCCCT < 41bp 1 0.597585466682164 1 0.693441987037659 experiment 0.804829066635671 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CSF1 ENSG00000184371 UTR3 Human protein_coding chr1:110472171 chr1:110472170 . . 0 20 hm5C_associated_SNPs_3014 0 0 0 0 0 chromatin 1 0.500231643921092 0.613116025924682 0.999536712157815 hm5C_site_6210 DeepMRMD:0.613116025924682;iRNA_m5C:0.999536712157815 6211 chr1 110559005 110559005 1 + G A rs141465433 110558996 + 110558976 110559016 41 CTCTCCAAAGCTGGGAAGCTCTGTGTTCCGGCCATGAACGT CTCTCCAAAGCTGGGAAGCTCTGTGTTCCAGCCATGAACGT < 41bp 1 0.492094931007108 1 0.136383891105652 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110558996 chr1:110559005 synonymous SNV . 0 30 hm5C_associated_SNPs_3015 0 0 1 0 2 Ribosome 1 0.500231469609204 1 0.999537060781591 hm5C_site_6211 DeepMRMD:1;iRNA_m5C:0.999537060781591 6212 chr1 110596834 110596834 1 + G C rs140450665 110596819 + 110596799 110596839 41 TTGGCTCATTTCACAATCAGCCCAAGGCTGGGAAAGCTGGA TTGGCTCATTTCACAATCAGCCCAAGGCTGGGAAACCTGGA < 41bp 1 0.414372713568231 1 0.103092938661575 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STRIP1 ENSG00000143093 UTR3 Human protein_coding chr1:110596819 chr1:110596834 . . 0 36 hm5C_associated_SNPs_3016 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6212 DeepMRMD:1;iRNA_m5C:0.999536712157815 6213 chr1 112999464 112999464 1 + G A rs17030336 112999446 + 112999426 112999466 41 TTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTA TTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCATA < 41bp 1 0.134095465153206 1 0.0710867941379547 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999446 chr1:112999464 synonymous SNV . 0 39 hm5C_associated_SNPs_3017 0 0 0 0 0 Ribosome 1 0.50023164115797 1 0.999536717684061 hm5C_site_6213 DeepMRMD:1;iRNA_m5C:0.999536717684061 6214 chr1 112999464 112999464 1 + G A rs17030336 112999447 + 112999427 112999467 41 TGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTAC TGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCATAC < 41bp 1 0.353738147798811 1 0.0818940997123718 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999447 chr1:112999464 synonymous SNV . 0 38 hm5C_associated_SNPs_3018 0 0 0 0 0 Ribosome 1 0.500231931289051 1 0.999536137421898 hm5C_site_6214 DeepMRMD:1;iRNA_m5C:0.999536137421898 6215 chr1 112999464 112999464 1 + G A rs17030336 112999452 + 112999432 112999472 41 TCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGT TCATCAGCTAGCAGCCCTGGCTACCAGTCATCATACCAAGT < 41bp 1 0.141641604503871 1 0.0199712812900543 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999452 chr1:112999464 synonymous SNV . 0 33 hm5C_associated_SNPs_3019 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6215 DeepMRMD:1;iRNA_m5C:0.999536712157815 6216 chr1 112999464 112999464 1 + G A rs17030336 112999455 + 112999435 112999475 41 TCAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGG TCAGCTAGCAGCCCTGGCTACCAGTCATCATACCAAGTAGG < 41bp 1 0.144140451332627 1 0.0734107792377472 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999455 chr1:112999464 synonymous SNV . 0 30 hm5C_associated_SNPs_3020 0 0 0 0 0 Ribosome 1 0.500231643921102 1 0.999536712157796 hm5C_site_6216 DeepMRMD:1;iRNA_m5C:0.999536712157796 6217 chr1 112999464 112999464 1 + G A rs17030336 112999456 + 112999436 112999476 41 CAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGG CAGCTAGCAGCCCTGGCTACCAGTCATCATACCAAGTAGGG < 41bp 1 0.159831086632719 1 0.326599717140198 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999456 chr1:112999464 synonymous SNV . 0 29 hm5C_associated_SNPs_3021 0 0 0 0 0 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_6217 DeepMRMD:1;iRNA_m5C:0.999536712157812 6218 chr1 112999464 112999464 1 + G A rs17030336 112999460 + 112999440 112999480 41 TAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGGATCA TAGCAGCCCTGGCTACCAGTCATCATACCAAGTAGGGATCA < 41bp 1 0.554085117885766 1 0.106090158224106 experiment 0.891829764228469 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999460 chr1:112999464 synonymous SNV . 0 25 hm5C_associated_SNPs_3022 0 0 0 0 0 Ribosome 1 0.500231643907843 1 0.999536712184314 hm5C_site_6218 DeepMRMD:1;iRNA_m5C:0.999536712184314 6219 chr1 112999464 112999464 1 + G A rs17030336 112999467 + 112999447 112999487 41 CCTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACG CCTGGCTACCAGTCATCATACCAAGTAGGGATCAACCAACG < 41bp 1 0.383016120153665 1 0.676654577255249 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999467 chr1:112999464 synonymous SNV . 0 18 hm5C_associated_SNPs_3023 0 0 0 0 0 Ribosome 1 0.500231643921092 0.646690845489502 0.999536712157815 hm5C_site_6219 DeepMRMD:0.646690845489502;iRNA_m5C:0.999536712157815 6220 chr1 112999464 112999464 1 + G A rs17030336 112999468 + 112999448 112999488 41 CTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACGG CTGGCTACCAGTCATCATACCAAGTAGGGATCAACCAACGG < 41bp 1 0.430895107906637 1 0.101359337568283 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999468 chr1:112999464 synonymous SNV . 0 17 hm5C_associated_SNPs_3024 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6220 DeepMRMD:1;iRNA_m5C:0.999536712157815 6221 chr1 113241052 113241052 1 + T C rs2306940 113241053 + 113241033 113241073 41 CCTCCAAGAAGGGCAAAGCTCGCCTGAGCCCTCGAAGTGTG CCTCCAAGAAGGGCAAAGCCCGCCTGAGCCCTCGAAGTGTG < 41bp 1 0.618324076168415 1 0.195704400539398 experiment 0.76335184766317 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113241053 chr1:113241052 synonymous SNV . 0 20 hm5C_associated_SNPs_3026 0 0 1 0 1 Cytosol 1 0.500231643921108 1 0.999536712157785 hm5C_site_6221 DeepMRMD:1;iRNA_m5C:0.999536712157785 6222 chr1 114516026 114516026 1 + C T rs114811221 114516043 + 114516023 114516063 41 GTACCAACACCAGTTTGCCACCCAATCCTACATTGGGTCTT GTATCAACACCAGTTTGCCACCCAATCCTACATTGGGTCTT < 41bp 1 0.329262992856548 1 0.107914090156555 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114516043 chr1:114516026 synonymous SNV . 0 4 hm5C_associated_SNPs_3027 0 0 1 0 0 Cytosol 1 0.500230108349412 1 0.999539783301176 hm5C_site_6222 DeepMRMD:1;iRNA_m5C:0.999539783301176 6223 chr1 116235043 116235043 1 + A G rs150705915 116235036 + 116235016 116235056 41 AGCTGCCCTGCCAAAGGAGACCAAACCATGCCAACCACGCT AGCTGCCCTGCCAAAGGAGACCAAACCGTGCCAACCACGCT < 41bp 1 0.27782562418362 1 0.436710745096207 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VANGL1 ENSG00000173218 UTR3 Human protein_coding chr1:116235036 chr1:116235043 . . 0 28 hm5C_associated_SNPs_3028 2 0 0 0 0 Ribosome 1 0.500231642859797 1 0.999536714280406 hm5C_site_6223 DeepMRMD:1;iRNA_m5C:0.999536714280406 Caudal dysgenesis syndrome Caudal dysgenesis syndrome 6224 chr1 116235043 116235043 1 + A G rs150705915 116235037 + 116235017 116235057 41 GCTGCCCTGCCAAAGGAGACCAAACCATGCCAACCACGCTG GCTGCCCTGCCAAAGGAGACCAAACCGTGCCAACCACGCTG < 41bp 1 0.315183191343936 1 0.313429594039917 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VANGL1 ENSG00000173218 UTR3 Human protein_coding chr1:116235037 chr1:116235043 . . 0 27 hm5C_associated_SNPs_3029 2 0 0 0 0 Ribosome 1 0.500231643925263 1 0.999536712149474 hm5C_site_6224 DeepMRMD:1;iRNA_m5C:0.999536712149474 Caudal dysgenesis syndrome Caudal dysgenesis syndrome 6225 chr1 116916064 116916064 1 + A C rs546221648 116916081 + 116916061 116916101 41 GGGAGCTGCTCTGTGCTTTTCTCTCTGATTCTCCAGCGACA GGGCGCTGCTCTGTGCTTTTCTCTCTGATTCTCCAGCGACA < 41bp 1 0.292916264006076 1 0.184197992086411 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP1A1 ENSG00000269279 CDS Human other chr1:116916081 chr1:116916064 synonymous SNV . 0 4 hm5C_associated_SNPs_3030 0 0 1 0 1 Nucleus 1 0.500231643703515 1 0.99953671259297 hm5C_site_6225 DeepMRMD:1;iRNA_m5C:0.99953671259297 6226 chr1 116942068 116942068 1 + G A rs145603535 116942086 + 116942066 116942106 41 GAGCAGGCTGAGAGTGACATCATGAAGAGACAGCCCAGAAA GAACAGGCTGAGAGTGACATCATGAAGAGACAGCCCAGAAA < 41bp 1 0.656109645023465 1 0.313202261924744 experiment 0.687780709953069 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942086 chr1:116942068 synonymous SNV . 0 3 hm5C_associated_SNPs_3031 0 0 1 0 2 Nucleus 1 0.500231643441544 1 0.999536713116912 hm5C_site_6226 DeepMRMD:1;iRNA_m5C:0.999536713116912 6227 chr1 117531911 117531911 1 + A G rs10923191 117531910 + 117531890 117531930 41 CCACCCACCTGCCCCATGTCCACTGGGCTGCCCAAGCTGCA CCACCCACCTGCCCCATGTCCGCTGGGCTGCCCAAGCTGCA < 41bp 1 0.625450566360377 1 0.182280689477921 experiment 0.749098867279246 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTGFRN ENSG00000134247 UTR3 Human protein_coding chr1:117531910 chr1:117531911 . . 0 22 hm5C_associated_SNPs_3032 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6227 DeepMRMD:1;iRNA_m5C:0.999536712157815 6228 chr1 117602960 117602960 1 + C A rs2244501 117602962 + 117602942 117602982 41 TTTGTGGAACTTGGGGGACCCAGCGAAATGGAAGAAGTTAG TTTGTGGAACTTGGGGGAACCAGCGAAATGGAAGAAGTTAG < 41bp 1 0.685923452880355 1 0.736413061618805 experiment 0.628153094239289 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 UTR5 Human protein_coding chr1:117602962 chr1:117602960 . . 0 19 hm5C_associated_SNPs_3033 0 0 1 0 1 Nucleus 1 0.500231644467212 0.52717387676239 0.999536711065576 hm5C_site_6228 DeepMRMD:0.52717387676239;iRNA_m5C:0.999536711065576 6229 chr1 117602965 117602965 1 + C A rs202173875 117602962 + 117602942 117602982 41 TTTGTGGAACTTGGGGGACCCAGCGAAATGGAAGAAGTTAG TTTGTGGAACTTGGGGGACCCAGAGAAATGGAAGAAGTTAG < 41bp 1 0.640434162969632 1 0.788447856903076 experiment 0.719131674060735 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 UTR5 Human protein_coding chr1:117602962 chr1:117602965 . . 0 24 hm5C_associated_SNPs_3034 0 0 1 0 1 Nucleus 1 0.500231643921067 0.423104286193848 0.999536712157865 hm5C_site_6229 DeepMRMD:0.423104286193848;iRNA_m5C:0.999536712157865 6230 chr1 117617687 117617687 1 + C G rs35838803 117617669 + 117617649 117617689 41 AAAAGAAGGCTGATAAGAAGCAAAGAGAAAAGGGAGATCAG AAAAGAAGGCTGATAAGAAGCAAAGAGAAAAGGGAGATGAG < 41bp 1 0.514394864630994 1 0.448565036058426 experiment 0.971210270738012 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTF2 ENSG00000116830 CDS Human protein_coding chr1:117617669 chr1:117617687 nonsynonymous SNV 0.001 1 39 hm5C_associated_SNPs_3035 0 0 1 0 0 Nucleus 1 0.500231643944769 1 0.999536712110463 hm5C_site_6230 DeepMRMD:1;iRNA_m5C:0.999536712110463 6231 chr1 118493462 118493462 1 + T C rs191049418 118493480 + 118493460 118493500 41 TTTCTGTCACTGTATGGACACAAACTGCCTGTTATATGCAT TTCCTGTCACTGTATGGACACAAACTGCCTGTTATATGCAT < 41bp 1 0.10461335260195 1 0.0867970287799835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118493480 chr1:118493462 synonymous SNV . 0 3 hm5C_associated_SNPs_3037 0 0 1 0 2 Nucleus 1 0.500229763196451 1 0.999540473607099 hm5C_site_6231 DeepMRMD:1;iRNA_m5C:0.999540473607099 6232 chr1 118499792 118499792 1 + T C rs199890965 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTACATG < 41bp 1 0.175781005663131 1 0.0594446063041687 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499792 nonsynonymous SNV 0.025 1 38 hm5C_associated_SNPs_3038 0 0 1 0 1 Nucleus 1 0.500231643921218 1 0.999536712157564 hm5C_site_6232 DeepMRMD:1;iRNA_m5C:0.999536712157564 6233 chr1 118502104 118502104 1 + T G rs75654390 118502122 + 118502102 118502142 41 CTTTTTCCTTTAAAGGACTCCTAAACTAAGCACAGAAGAGT CTGTTTCCTTTAAAGGACTCCTAAACTAAGCACAGAAGAGT < 41bp 1 0.258043886866584 1 0.337478369474411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR3 ENSG00000065183 UTR3 Human protein_coding chr1:118502122 chr1:118502104 . . 0 3 hm5C_associated_SNPs_3039 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6233 DeepMRMD:1;iRNA_m5C:0.999536712157815 6234 chr1 119724984 119724984 1 + G A rs587652547 119724979 + 119724959 119724999 41 AGTATCTAGGAGGCAGGGATCAGAGGAAGTAGATTCAGAGG AGTATCTAGGAGGCAGGGATCAGAGAAAGTAGATTCAGAGG < 41bp 1 0.620807570378275 1 0.906309902667999 experiment 0.758384859243449 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LOC101929147 ENSG00000231365 ncRNA_exonic Human antisense chr1:119724979 chr1:119724984 . . 0 26 hm5C_associated_SNPs_3040 0 0 0 0 0 unknown 1 0.500231643921093 0.187380194664002 0.999536712157815 hm5C_site_6234 DeepMRMD:0.187380194664002;iRNA_m5C:0.999536712157815 6235 chr1 120285546 120285546 1 + G A rs543703 120285545 + 120285525 120285565 41 GGGCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGGCTCA GGGCTTGGTCCAAGGCACTACACCTGTACTGCAGGGGCTCA < 41bp 1 0.505167968799273 1 0.155221790075302 experiment 0.989664062401455 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120285545 chr1:120285546 synonymous SNV . 0 22 hm5C_associated_SNPs_3041 1 0 1 0 0 Ribosome 1 0.500231643921384 1 0.999536712157233 hm5C_site_6235 DeepMRMD:1;iRNA_m5C:0.999536712157233 Phosphoglycerate dehydrogenase deficiency Phosphoglycerate dehydrogenase deficiency 6236 chr1 120285546 120285546 1 + G A rs543703 120285547 + 120285527 120285567 41 GCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGGCTCAAT GCTTGGTCCAAGGCACTACACCTGTACTGCAGGGGCTCAAT < 41bp 1 0.272631308730176 1 0.0344723165035248 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120285547 chr1:120285546 synonymous SNV . 0 20 hm5C_associated_SNPs_3042 1 0 1 0 0 Ribosome 1 0.500231644047169 1 0.999536711905663 hm5C_site_6236 DeepMRMD:1;iRNA_m5C:0.999536711905663 Phosphoglycerate dehydrogenase deficiency Phosphoglycerate dehydrogenase deficiency 6237 chr1 144014058 144014058 1 + G A rs587603097 144014050 + 144014030 144014070 41 ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC ACCTGGAGAAGCTGGCAGAACGCTTCCTAGCCAAGACATGC < 41bp 1 0.176017306332367 1 0.254496604204178 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014050 chr1:144014058 . . 0 29 hm5C_associated_SNPs_3043 0 0 1 0 1 unknown 1 0.500231643917847 1 0.999536712164306 hm5C_site_6237 DeepMRMD:1;iRNA_m5C:0.999536712164306 6238 chr1 144014058 144014058 1 + G A rs587603097 144014052 + 144014032 144014072 41 CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG CTGGAGAAGCTGGCAGAACGCTTCCTAGCCAAGACATGCAG < 41bp 1 0.240507213629477 1 0.529560029506683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014052 chr1:144014058 . . 0 27 hm5C_associated_SNPs_3044 0 0 1 0 1 unknown 1 0.500231643733723 0.940879940986634 0.999536712532554 hm5C_site_6238 DeepMRMD:0.940879940986634;iRNA_m5C:0.999536712532554 6239 chr1 144944716 144944716 1 + C G rs587659178 144944724 + 144944704 144944744 41 GTAGTATCTGTTCTTATCAGCTTAAATAATCAGGATGGAAA GTAGTATCTGTTGTTATCAGCTTAAATAATCAGGATGGAAA < 41bp 1 0.0418482567669269 1 0.123228073120117 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LOC100996724 ENSG00000222788 ncRNA_exonic Human snRNA chr1:144944724 chr1:144944716 . . 0 13 hm5C_associated_SNPs_3045 0 0 1 0 0 unknown 1 0.500231643920379 1 0.999536712159242 hm5C_site_6239 DeepMRMD:1;iRNA_m5C:0.999536712159242 6240 chr1 145017916 145017916 1 + G A rs587663091 145017910 - 145017890 145017930 41 TGCTTTTTCTTGGGCTCCTTCTGGCAAGTTGGCAGAACGAA TGCTTTTTCTTGGGTTCCTTCTGGCAAGTTGGCAGAACGAA < 41bp 1 0.400640810777936 1 0.635618925094604 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC100996724 ENSG00000178104 UTR3 Human protein_coding chr1:145017910 chr1:145017916 . . 0 15 hm5C_associated_SNPs_3046 0 0 0 0 1 unknown 1 0.500231643292617 0.728762149810792 0.999536713414767 hm5C_site_6240 DeepMRMD:0.728762149810792;iRNA_m5C:0.999536713414767 6241 chr1 145017916 145017916 1 + G A rs587663091 145017913 - 145017893 145017933 41 GGGTGCTTTTTCTTGGGCTCCTTCTGGCAAGTTGGCAGAAC GGGTGCTTTTTCTTGGGTTCCTTCTGGCAAGTTGGCAGAAC < 41bp 1 0.253635981898726 1 0.0626510083675385 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC100996724 ENSG00000178104 UTR3 Human protein_coding chr1:145017913 chr1:145017916 . . 0 18 hm5C_associated_SNPs_3047 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6241 DeepMRMD:1;iRNA_m5C:0.999536712157815 6242 chr1 145115800 145115800 1 + T C rs587606098 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTACCTGAACATGCATTCCACTTATGCCAAACTT < 41bp 1 0.0542264323024266 1 0.0520366728305817 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115800 . . 0 12 hm5C_associated_SNPs_3048 0 0 1 0 1 Cytosol 1 0.500231643921079 1 0.999536712157842 hm5C_site_6242 DeepMRMD:1;iRNA_m5C:0.999536712157842 6243 chr1 145295505 145295505 1 + G C rs587623393 145295523 + 145295503 145295543 41 CTGAAGCAAGCTGAGGAGCTCAGGTGAGGGGACCCCATAGG CTCAAGCAAGCTGAGGAGCTCAGGTGAGGGGACCCCATAGG < 41bp 1 0.338230338305275 1 0.803146719932556 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBPF10 ENSG00000163386 CDS Human other chr1:145295523 chr1:145295505 synonymous SNV . 0 3 hm5C_associated_SNPs_3049 0 0 0 0 0 chromatin 1 0.500231643921329 0.393706560134888 0.999536712157343 hm5C_site_6243 DeepMRMD:0.393706560134888;iRNA_m5C:0.999536712157343 6244 chr1 145325997 145325997 1 + A G rs199988926 145325991 + 145325971 145326011 41 GATGAGAAAGGGCCTGAAGTCTTGCAAGACTCACTGGATAG GATGAGAAAGGGCCTGAAGTCTTGCAGGACTCACTGGATAG < 41bp 1 0.164588822222799 1 0.122866868972778 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NBPF10 ENSG00000163386 CDS Human other chr1:145325991 chr1:145325997 synonymous SNV . 0 27 hm5C_associated_SNPs_3050 0 0 0 0 1 chromatin 1 0.500231643921098 1 0.999536712157804 hm5C_site_6244 DeepMRMD:1;iRNA_m5C:0.999536712157804 6245 chr1 145325999 145325999 1 + A G rs189214440 145325991 + 145325971 145326011 41 GATGAGAAAGGGCCTGAAGTCTTGCAAGACTCACTGGATAG GATGAGAAAGGGCCTGAAGTCTTGCAAGGCTCACTGGATAG < 41bp 1 0.178851418433182 1 0.173345565795898 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NBPF10 ENSG00000163386 CDS Human other chr1:145325991 chr1:145325999 nonsynonymous SNV . 0 29 hm5C_associated_SNPs_3051 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_6245 DeepMRMD:1;iRNA_m5C:0.999536712157815 6246 chr1 145368524 145368524 1 + A T rs111770733 145368536 + 145368516 145368556 41 GTCAATGTACTTTGAACTACCTGACTCATTCCAGCACTACA GTCAATGTTCTTTGAACTACCTGACTCATTCCAGCACTACA < 41bp 1 0.0824220212964991 1 0.092308521270752 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368536 chr1:145368524 nonsynonymous SNV . 0 9 hm5C_associated_SNPs_3052 0 0 0 0 1 exosome 1 0.50023129498867 1 0.999537410022661 hm5C_site_6246 DeepMRMD:1;iRNA_m5C:0.999537410022661 6247 chr1 145368524 145368524 1 + A T rs111770733 145368540 + 145368520 145368560 41 ATGTACTTTGAACTACCTGACTCATTCCAGCACTACAGAAG ATGTTCTTTGAACTACCTGACTCATTCCAGCACTACAGAAG < 41bp 1 0.0732806024877693 1 0.0883234739303589 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368540 chr1:145368524 nonsynonymous SNV . 0 5 hm5C_associated_SNPs_3053 0 0 0 0 1 exosome 1 0.500231644472071 1 0.999536711055858 hm5C_site_6247 DeepMRMD:1;iRNA_m5C:0.999536711055858 6248 chr1 145477339 145477339 1 + G A rs587627164 145477340 + 145477320 145477360 41 GCCGCTGCTCCTGTCTGGGGCCCCAGGACTACCCCTGCCCC GCCGCTGCTCCTGTCTGGGACCCCAGGACTACCCCTGCCCC < 41bp 1 0.368428711668966 1 0.366066575050354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LIX1L ENSG00000152022 CDS Human other chr1:145477340 chr1:145477339 nonsynonymous SNV . 0 20 hm5C_associated_SNPs_3054 0 0 1 0 0 chromatin 1 0.500231817949849 1 0.999536364100303 hm5C_site_6248 DeepMRMD:1;iRNA_m5C:0.999536364100303 6249 chr1 145507646 145507646 1 + G A rs139428292 145507631 + 145507611 145507651 41 TTTCCCGAGGTACCTAGTGTCTGAGCGGCACAGACGAGATC TTTCCCGAGGTACCTAGTGTCTGAGCGGCACAGACAAGATC < 41bp 1 0.402445173326752 1 0.387574851512909 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LIX1L-AS1 ENSG00000234222 ncRNA_exonic Human antisense chr1:145507631 chr1:145507646 . . 0 36 hm5C_associated_SNPs_3055 2 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_6249 DeepMRMD:1;iRNA_m5C:0.999536712157816 Radial aplasia-thrombocytopenia syndrome Radial aplasia-thrombocytopenia syndrome 6250 chr1 145507646 145507646 1 + G A rs139428292 145507636 + 145507616 145507656 41 CGAGGTACCTAGTGTCTGAGCGGCACAGACGAGATCTCGAT CGAGGTACCTAGTGTCTGAGCGGCACAGACAAGATCTCGAT < 41bp 1 0.576579385764312 1 0.678073644638062 experiment 0.846841228471377 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LIX1L-AS1 ENSG00000234222 ncRNA_exonic Human antisense chr1:145507636 chr1:145507646 . . 0 31 hm5C_associated_SNPs_3056 2 0 0 0 1 unknown 1 0.500231643008855 0.643852710723876 0.999536713982289 hm5C_site_6250 DeepMRMD:0.643852710723876;iRNA_m5C:0.999536713982289 Radial aplasia-thrombocytopenia syndrome Radial aplasia-thrombocytopenia syndrome 6251 chr1 145509217 145509217 1 + C G rs12079762 145509206 + 145509186 145509226 41 GAAGTCCAGACCGGAGACGTCGCTGACAGGTCCTCTGTTGT GAAGTCCAGACCGGAGACGTCGCTGACAGGTGCTCTGTTGT < 41bp 1 0.180716429977014 1 0.255187481641769 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM8A ENSG00000131795 UTR3 Human other chr1:145509206 chr1:145509217 . . 0 32 hm5C_associated_SNPs_3057 1 0 0 0 1 Ribosome 1 0.500231644326063 1 0.999536711347874 hm5C_site_6251 DeepMRMD:1;iRNA_m5C:0.999536711347874 not specified not specified 6252 chr1 145509236 145509236 1 + C G rs201860373 145509238 + 145509218 145509258 41 CTCTGTTGTCCAGGTGTTCTCTTCAAGATTCCATTTGACCA CTCTGTTGTCCAGGTGTTGTCTTCAAGATTCCATTTGACCA < 41bp 1 0.181030128524424 1 0.367906630039215 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM8A ENSG00000131795 UTR3 Human other chr1:145509238 chr1:145509236 . . 0 19 hm5C_associated_SNPs_3058 0 0 0 0 1 Ribosome 1 0.500231744581571 1 0.999536510836858 hm5C_site_6252 DeepMRMD:1;iRNA_m5C:0.999536510836858 6253 chr1 145518136 145518136 1 + G A rs587764801 145518156 + 145518136 145518176 41 GTTGTCCTGAGATTCTGCATCACTGTTAGTCACCTCAATCG ATTGTCCTGAGATTCTGCATCACTGTTAGTCACCTCAATCG < 41bp 1 0.209843339196327 1 0.0676871538162231 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145518156 chr1:145518136 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_3059 0 0 1 0 1 Ribosome 1 0.500231643921013 1 0.999536712157973 hm5C_site_6253 DeepMRMD:1;iRNA_m5C:0.999536712157973 6254 chr1 145543545 145543545 1 + T C rs12402234 145543541 + 145543521 145543561 41 ACAGTAAAGGCAGTTGGATTCTCATAGACAACTGGGTAACT ACAGTAAAGGCAGTTGGATTCTCACAGACAACTGGGTAACT < 41bp 1 0.0945966350445986 1 0.299053192138672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ITGA10 ENSG00000143127 UTR3 Human protein_coding chr1:145543541 chr1:145543545 . . 0 25 hm5C_associated_SNPs_3060 0 0 0 1 0 exosome 1 0.500231645788848 1 0.999536708422304 hm5C_site_6254 DeepMRMD:1;iRNA_m5C:0.999536708422304 6255 chr1 145585833 145585833 1 + T G rs75595063 145585822 + 145585802 145585842 41 TTAACCTCTTTTTAAGGACACTGGGGTCTGTTTCTGGAAAT TTAACCTCTTTTTAAGGACACTGGGGTCTGTGTCTGGAAAT < 41bp 1 0.23507430764565 1 0.281362175941467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PIAS3 ENSG00000131788 UTR3 Human protein_coding chr1:145585822 chr1:145585833 . . 0 32 hm5C_associated_SNPs_3061 0 0 1 0 0 chromatin 1 0.50023164392109 1 0.999536712157819 hm5C_site_6255 DeepMRMD:1;iRNA_m5C:0.999536712157819 6256 chr1 147091689 147091689 1 + G A rs61751617 147091688 + 147091668 147091708 41 AAACTCTGAAATGGAAGGGCCGAATGTCCCCAACCCTGCAT AAACTCTGAAATGGAAGGGCCAAATGTCCCCAACCCTGCAT < 41bp 1 0.176544521568674 1 0.180825412273407 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCL9 ENSG00000116128 CDS Human protein_coding chr1:147091688 chr1:147091689 synonymous SNV . 0 22 hm5C_associated_SNPs_3062 0 0 0 0 0 Nucleus 1 0.500231640000209 1 0.999536719999582 hm5C_site_6256 DeepMRMD:1;iRNA_m5C:0.999536719999582 6257 chr1 147719036 147719036 1 + T C rs587619612 147719045 + 147719025 147719065 41 ACCTGTCTCTGTGGCGCAATCGGTCAGAGCGTTCGGCTATT ACCTGTCTCTGCGGCGCAATCGGTCAGAGCGTTCGGCTATT < 41bp 1 0.400115392271395 1 0.7818683385849 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC101927468 ENSG00000227700 downstream Human processed_pseudogene chr1:147719045 chr1:147719036 . . 0 12 hm5C_associated_SNPs_3063 0 0 1 0 0 unknown 1 0.500231643921026 0.4362633228302 0.999536712157949 hm5C_site_6257 DeepMRMD:0.4362633228302;iRNA_m5C:0.999536712157949 6258 chr1 147719046 147719046 1 + G C rs112795352 147719045 + 147719025 147719065 41 ACCTGTCTCTGTGGCGCAATCGGTCAGAGCGTTCGGCTATT ACCTGTCTCTGTGGCGCAATCCGTCAGAGCGTTCGGCTATT < 41bp 1 0.130649100334935 1 0.171921938657761 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC101927468 ENSG00000227700 downstream Human processed_pseudogene chr1:147719045 chr1:147719046 . . 0 22 hm5C_associated_SNPs_3064 0 0 1 0 0 unknown 1 0.500231690786211 1 0.999536618427578 hm5C_site_6258 DeepMRMD:1;iRNA_m5C:0.999536618427578 6259 chr1 147719046 147719046 1 + G C rs112795352 147719058 + 147719038 147719078 41 GCGCAATCGGTCAGAGCGTTCGGCTATTAACCGAACGGTGA GCGCAATCCGTCAGAGCGTTCGGCTATTAACCGAACGGTGA < 41bp 1 0.499712647304644 1 0.261829763650894 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC101927468 ENSG00000227700 downstream Human processed_pseudogene chr1:147719058 chr1:147719046 . . 0 9 hm5C_associated_SNPs_3065 0 0 1 0 0 unknown 1 0.500231643921171 1 0.999536712157657 hm5C_site_6259 DeepMRMD:1;iRNA_m5C:0.999536712157657 6260 chr1 148248124 148248124 1 + G A rs587682440 148248127 + 148248107 148248147 41 CAGTACCTGTCTCTGTGGCGCAATCGGTTAGCGCGTTCGGC CAGTACCTGTCTCTGTGACGCAATCGGTTAGCGCGTTCGGC < 41bp 1 0.103624361810238 1 0.223477065563202 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBPF19;NBPF26 ENSG00000236140 upstream Human lincRNA chr1:148248127 chr1:148248124 . . 0 18 hm5C_associated_SNPs_3066 0 0 1 0 0 unknown 1 0.50023164391288 1 0.99953671217424 hm5C_site_6260 DeepMRMD:1;iRNA_m5C:0.99953671217424 6261 chr1 148248124 148248124 1 + G A rs587682440 148248144 + 148248124 148248164 41 GCGCAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTG ACGCAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTG < 41bp 1 0.592262603349427 1 0.0904222130775452 experiment 0.815474793301145 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBPF19;NBPF26 ENSG00000236140 upstream Human lincRNA chr1:148248144 chr1:148248124 . . 0 1 hm5C_associated_SNPs_3067 0 0 1 0 0 unknown 1 0.500231643920972 1 0.999536712158056 hm5C_site_6261 DeepMRMD:1;iRNA_m5C:0.999536712158056 6262 chr1 148248125 148248125 1 + C A rs587764409 148248127 + 148248107 148248147 41 CAGTACCTGTCTCTGTGGCGCAATCGGTTAGCGCGTTCGGC CAGTACCTGTCTCTGTGGAGCAATCGGTTAGCGCGTTCGGC < 41bp 1 0.0845287547944375 1 0.260852456092834 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBPF19;NBPF26 ENSG00000236140 upstream Human lincRNA chr1:148248127 chr1:148248125 . . 0 19 hm5C_associated_SNPs_3068 0 0 1 0 0 unknown 1 0.500231643920877 1 0.999536712158246 hm5C_site_6262 DeepMRMD:1;iRNA_m5C:0.999536712158246 6263 chr1 148248125 148248125 1 + C A rs587764409 148248144 + 148248124 148248164 41 GCGCAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTG GAGCAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTG < 41bp 1 0.560217583399328 1 0.0761602222919464 experiment 0.879564833201344 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBPF19;NBPF26 ENSG00000236140 upstream Human lincRNA chr1:148248144 chr1:148248125 . . 0 2 hm5C_associated_SNPs_3069 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6263 DeepMRMD:1;iRNA_m5C:0.999536712157815 6264 chr1 148248155 148248155 1 + C T rs587765549 148248144 + 148248124 148248164 41 GCGCAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTG GCGCAATCGGTTAGCGCGTTCGGCTGTTAACTGAAAGGTTG < 41bp 1 0.642857188402544 1 0.0868683755397797 experiment 0.714285623194912 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBPF19;NBPF26 ENSG00000236140 upstream Human lincRNA chr1:148248144 chr1:148248155 . . 0 32 hm5C_associated_SNPs_3070 0 0 1 0 0 unknown 1 0.500231643844103 1 0.999536712311794 hm5C_site_6264 DeepMRMD:1;iRNA_m5C:0.999536712311794 6265 chr1 148248155 148248155 1 + C T rs587765549 148248171 + 148248151 148248191 41 TAACCGAAAGGTTGGTGGTTCGAGCCCACCCAGGGACGCCT TAACTGAAAGGTTGGTGGTTCGAGCCCACCCAGGGACGCCT < 41bp 1 0.401405624931701 1 0.469014465808868 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBPF19;NBPF26 ENSG00000236140 upstream Human lincRNA chr1:148248171 chr1:148248155 . . 0 5 hm5C_associated_SNPs_3071 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6265 DeepMRMD:1;iRNA_m5C:0.999536712157815 6266 chr1 148248155 148248155 1 + C T rs587765549 148248175 + 148248155 148248195 41 CGAAAGGTTGGTGGTTCGAGCCCACCCAGGGACGCCTCTTT TGAAAGGTTGGTGGTTCGAGCCCACCCAGGGACGCCTCTTT < 41bp 1 0.0916333708611689 1 0.0329773724079132 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBPF19;NBPF26 ENSG00000236140 upstream Human lincRNA chr1:148248175 chr1:148248155 . . 0 1 hm5C_associated_SNPs_3072 0 0 1 0 0 unknown 1 0.500231643921074 1 0.999536712157851 hm5C_site_6266 DeepMRMD:1;iRNA_m5C:0.999536712157851 6267 chr1 148248187 148248187 1 + C A rs587657101 148248171 + 148248151 148248191 41 TAACCGAAAGGTTGGTGGTTCGAGCCCACCCAGGGACGCCT TAACCGAAAGGTTGGTGGTTCGAGCCCACCCAGGGAAGCCT < 41bp 1 0.399935163080895 1 0.417023748159409 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBPF19;NBPF26 ENSG00000236140 upstream Human lincRNA chr1:148248171 chr1:148248187 . . 0 37 hm5C_associated_SNPs_3073 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6267 DeepMRMD:1;iRNA_m5C:0.999536712157815 6268 chr1 148248187 148248187 1 + C A rs587657101 148248175 + 148248155 148248195 41 CGAAAGGTTGGTGGTTCGAGCCCACCCAGGGACGCCTCTTT CGAAAGGTTGGTGGTTCGAGCCCACCCAGGGAAGCCTCTTT < 41bp 1 0.0873270733808299 1 0.0336086750030518 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBPF19;NBPF26 ENSG00000236140 upstream Human lincRNA chr1:148248175 chr1:148248187 . . 0 33 hm5C_associated_SNPs_3074 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6268 DeepMRMD:1;iRNA_m5C:0.999536712157815 6269 chr1 148248187 148248187 1 + C A rs587657101 148248177 + 148248157 148248197 41 AAAGGTTGGTGGTTCGAGCCCACCCAGGGACGCCTCTTTGA AAAGGTTGGTGGTTCGAGCCCACCCAGGGAAGCCTCTTTGA < 41bp 1 0.366365070290238 1 0.100580424070358 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBPF19;NBPF26 ENSG00000236140 upstream Human lincRNA chr1:148248177 chr1:148248187 . . 0 31 hm5C_associated_SNPs_3075 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6269 DeepMRMD:1;iRNA_m5C:0.999536712157815 Ischemic stroke 6270 chr1 148248187 148248187 1 + C A rs587657101 148248180 + 148248160 148248200 41 GGTTGGTGGTTCGAGCCCACCCAGGGACGCCTCTTTGAGCT GGTTGGTGGTTCGAGCCCACCCAGGGAAGCCTCTTTGAGCT < 41bp 1 0.650166201533408 1 0.596657633781433 experiment 0.699667596933183 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBPF19;NBPF26 ENSG00000236140 upstream Human lincRNA chr1:148248180 chr1:148248187 . . 0 28 hm5C_associated_SNPs_3076 0 0 1 0 0 unknown 1 0.500231643921092 0.806684732437134 0.999536712157815 hm5C_site_6270 DeepMRMD:0.806684732437134;iRNA_m5C:0.999536712157815 6271 chr1 150280550 150280550 1 + G A rs4845 150280549 + 150280529 150280569 41 ATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT ATTATGAGAAGCCATGCCGCCAGCGACAGAGGGAAAGCTAT < 41bp 1 0.650533149233575 1 0.658293843269348 experiment 0.698933701532851 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280549 chr1:150280550 nonsynonymous SNV 0.557 0 22 hm5C_associated_SNPs_3078 0 0 1 0 1 Cytosol 1 0.500231654469015 0.683412313461304 0.99953669106197 hm5C_site_6271 DeepMRMD:0.683412313461304;iRNA_m5C:0.99953669106197 6272 chr1 150470990 150470990 1 + C T rs41264465 150470979 + 150470959 150470999 41 CTCTGCACCCCAACCTCAGCCTGATGTTCGCCCACCGGCCC CTCTGCACCCCAACCTCAGCCTGATGTTCGCTCACCGGCCC < 41bp 1 0.64616877281113 1 0.423715382814407 experiment 0.70766245437774 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TARS2 ENSG00000143374 CDS Human protein_coding chr1:150470979 chr1:150470990 synonymous SNV . 0 32 hm5C_associated_SNPs_3079 1 0 1 0 1 Ribosome 1 0.50022521824171 1 0.99954956351658 hm5C_site_6272 DeepMRMD:1;iRNA_m5C:0.99954956351658 not specified not specified 6273 chr1 150923099 150923099 1 + T C rs17661357 150923116 + 150923096 150923136 41 CTGTCTGTCTCGAGTCAGACCTATGAGGAATGAGCAGTACC CTGCCTGTCTCGAGTCAGACCTATGAGGAATGAGCAGTACC < 41bp 1 0.209454905718021 1 0.284833133220673 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150923116 chr1:150923099 synonymous SNV . 0 4 hm5C_associated_SNPs_3080 0 0 1 0 0 Nucleus 1 0.500231648445242 1 0.999536703109515 hm5C_site_6273 DeepMRMD:1;iRNA_m5C:0.999536703109515 6274 chr1 151020378 151020378 1 + C T rs74856367 151020375 + 151020355 151020395 41 TCCTGCTGCTGAATCTGGGTCCCCGGGCGGCGGGGGCCCAA TCCTGCTGCTGAATCTGGGTCCCTGGGCGGCGGGGGCCCAA < 41bp 1 0.401877936549696 1 0.140821397304535 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020375 chr1:151020378 nonsynonymous SNV 0.667 1 24 hm5C_associated_SNPs_3081 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6274 DeepMRMD:1;iRNA_m5C:0.999536712157815 6275 chr1 151020378 151020378 1 + C T rs74856367 151020376 + 151020356 151020396 41 CCTGCTGCTGAATCTGGGTCCCCGGGCGGCGGGGGCCCAAG CCTGCTGCTGAATCTGGGTCCCTGGGCGGCGGGGGCCCAAG < 41bp 1 0.542804102686165 1 0.38517165184021 experiment 0.914391794627671 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020376 chr1:151020378 nonsynonymous SNV 0.667 1 23 hm5C_associated_SNPs_3082 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_6275 DeepMRMD:1;iRNA_m5C:0.999536712157812 6276 chr1 151020378 151020378 1 + C T rs74856367 151020391 + 151020371 151020411 41 GGGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTC GGGTCCCTGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTC < 41bp 1 0.697484550079515 1 0.629277110099792 experiment 0.605030899840969 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020391 chr1:151020378 nonsynonymous SNV 0.667 1 8 hm5C_associated_SNPs_3083 0 0 1 0 0 Cytosol 1 0.500231642064109 0.741445779800416 0.999536715871781 hm5C_site_6276 DeepMRMD:0.741445779800416;iRNA_m5C:0.999536715871781 6277 chr1 151020378 151020378 1 + C T rs74856367 151020392 + 151020372 151020412 41 GGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTCC GGTCCCTGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTCC < 41bp 1 0.502141686017928 1 0.777862906455994 experiment 0.995716627964145 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020392 chr1:151020378 nonsynonymous SNV 0.667 1 7 hm5C_associated_SNPs_3084 0 0 1 0 0 Cytosol 1 0.500231643918059 0.444274187088012 0.999536712163882 hm5C_site_6277 DeepMRMD:0.444274187088012;iRNA_m5C:0.999536712163882 6278 chr1 151020398 151020398 1 + C T rs115769286 151020391 + 151020371 151020411 41 GGGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTC GGGTCCCCGGGCGGCGGGGGCCCAAGGTCTGACCCAGACTC < 41bp 1 0.649908090376645 1 0.500081717967987 experiment 0.70018381924671 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020391 chr1:151020398 synonymous SNV . 0 28 hm5C_associated_SNPs_3085 0 0 1 0 0 Cytosol 1 0.500231643921092 0.999836564064026 0.999536712157815 hm5C_site_6278 DeepMRMD:0.999836564064026;iRNA_m5C:0.999536712157815 6279 chr1 151020398 151020398 1 + C T rs115769286 151020392 + 151020372 151020412 41 GGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTCC GGTCCCCGGGCGGCGGGGGCCCAAGGTCTGACCCAGACTCC < 41bp 1 0.602768441536506 1 0.755930423736572 experiment 0.794463116926989 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020392 chr1:151020398 synonymous SNV . 0 27 hm5C_associated_SNPs_3086 0 0 1 0 0 Cytosol 1 0.500231643921093 0.488139152526856 0.999536712157814 hm5C_site_6279 DeepMRMD:0.488139152526856;iRNA_m5C:0.999536712157814 6280 chr1 151020401 151020401 1 + G A rs116195801 151020391 + 151020371 151020411 41 GGGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTC GGGTCCCCGGGCGGCGGGGGCCCAAGGCCTAACCCAGACTC < 41bp 1 0.694668585597597 1 0.474880546331406 experiment 0.610662828804807 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020391 chr1:151020401 synonymous SNV . 0 31 hm5C_associated_SNPs_3087 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6280 DeepMRMD:1;iRNA_m5C:0.999536712157815 6281 chr1 151020401 151020401 1 + G A rs116195801 151020392 + 151020372 151020412 41 GGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTCC GGTCCCCGGGCGGCGGGGGCCCAAGGCCTAACCCAGACTCC < 41bp 1 0.524274778520899 1 0.721778333187103 experiment 0.951450442958201 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020392 chr1:151020401 synonymous SNV . 0 30 hm5C_associated_SNPs_3088 0 0 1 0 0 Cytosol 1 0.500231643921092 0.556443333625794 0.999536712157815 hm5C_site_6281 DeepMRMD:0.556443333625794;iRNA_m5C:0.999536712157815 6282 chr1 151510817 151510817 1 + A C rs75094320 151510798 + 151510778 151510818 41 CTTCTCTGACCACATGTGCCCAACTTCAATAAGAGAACCAA CTTCTCTGACCACATGTGCCCAACTTCAATAAGAGAACCCA < 41bp 1 0.271259972213134 1 0.0900487303733826 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CGN ENSG00000143375 UTR3 Human protein_coding chr1:151510798 chr1:151510817 . . 0 40 hm5C_associated_SNPs_3089 0 0 0 0 0 exosome 1 0.500231598762975 1 0.999536802474051 hm5C_site_6282 DeepMRMD:1;iRNA_m5C:0.999536802474051 6283 chr1 151633309 151633309 1 + A G rs146222009 151633305 + 151633285 151633325 41 CGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATC CGAGTAATTGGTGAGAGTGACATCGTGCAGGAATTCCTATC < 41bp 1 0.210035530562388 1 0.284423172473907 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX27 ENSG00000143376 CDS Human protein_coding chr1:151633305 chr1:151633309 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_3090 0 0 1 0 1 Ribosome 1 0.500231661413736 1 0.999536677172529 hm5C_site_6283 DeepMRMD:1;iRNA_m5C:0.999536677172529 6284 chr1 151670090 151670090 1 + G A rs117826940 151670098 + 151670078 151670118 41 TTGGGTGATGGAGGCGGGTTCCCTGTGGCTGCGTGGATCCC TTGGGTGATGGAAGCGGGTTCCCTGTGGCTGCGTGGATCCC < 41bp 1 0.243933894750703 1 0.0521741509437561 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX27 ENSG00000143376 UTR3 Human protein_coding chr1:151670098 chr1:151670090 . . 0 13 hm5C_associated_SNPs_3091 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6284 DeepMRMD:1;iRNA_m5C:0.999536712157815 6285 chr1 153606479 153606479 1 + G A rs144899251 153606482 - 153606462 153606502 41 AATTACGTCAGGCGTCAGATCCGCGCACGACTAGAGGGCGG AATTACGTCAGGCGTCAGATCCGTGCACGACTAGAGGGCGG < 41bp 1 0.437714448436946 1 0.676311731338501 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control CHTOP;S100A13 ENSG00000271853;ENSG00000272030 ncRNA_exonic Human other chr1:153606482 chr1:153606479 . . 0 24 hm5C_associated_SNPs_3092 0 0 0 0 1 unknown 1 0.500231649452873 0.647376537322998 0.999536701094254 hm5C_site_6285 DeepMRMD:0.647376537322998;iRNA_m5C:0.999536701094254 6286 chr1 153606479 153606479 1 + G A rs144899251 153606494 - 153606474 153606514 41 TGGCGTCTACGCAATTACGTCAGGCGTCAGATCCGCGCACG TGGCGTCTACGCAATTACGTCAGGCGTCAGATCCGTGCACG < 41bp 1 0.582113189151709 1 0.798675298690796 experiment 0.835773621696583 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTOP;S100A13 ENSG00000271853;ENSG00000272030 ncRNA_exonic Human other chr1:153606494 chr1:153606479 . . 0 36 hm5C_associated_SNPs_3093 0 0 0 0 1 unknown 1 0.500232193283431 0.402649402618408 0.999535613433137 hm5C_site_6286 DeepMRMD:0.402649402618408;iRNA_m5C:0.999535613433137 6287 chr1 153617525 153617525 1 + T C rs184115092 153617536 + 153617516 153617556 41 TTTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGT TTTTTTTTTCCCCCTTTGGGCCAGGTCGGGGTATGATAGGT < 41bp 1 0.131186981796935 1 0.369094729423523 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTOP ENSG00000160679 intronic Human protein_coding chr1:153617536 chr1:153617525 . . 0 10 hm5C_associated_SNPs_3094 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6287 DeepMRMD:1;iRNA_m5C:0.999536712157815 6288 chr1 153617525 153617525 1 + T C rs184115092 153617537 + 153617517 153617557 41 TTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGTC TTTTTTTTCCCCCTTTGGGCCAGGTCGGGGTATGATAGGTC < 41bp 1 0.164999436259114 1 0.433088481426239 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CHTOP ENSG00000160679 intronic Human protein_coding chr1:153617537 chr1:153617525 . . 0 9 hm5C_associated_SNPs_3095 0 0 1 0 0 Cytosol 1 0.500231643881648 1 0.999536712236704 hm5C_site_6288 DeepMRMD:1;iRNA_m5C:0.999536712236704 6289 chr1 153617544 153617544 1 + G A rs145696354 153617536 + 153617516 153617556 41 TTTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGT TTTTTTTTTTCCCCTTTGGGCCAGGTCGAGGTATGATAGGT < 41bp 1 0.121420298086718 1 0.401510775089264 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617536 chr1:153617544 synonymous SNV 1.000 0 29 hm5C_associated_SNPs_3096 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6289 DeepMRMD:1;iRNA_m5C:0.999536712157815 6290 chr1 153617544 153617544 1 + G A rs145696354 153617537 + 153617517 153617557 41 TTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGTC TTTTTTTTTCCCCTTTGGGCCAGGTCGAGGTATGATAGGTC < 41bp 1 0.152472024080784 1 0.462268024682999 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617537 chr1:153617544 synonymous SNV 1.000 0 28 hm5C_associated_SNPs_3097 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6290 DeepMRMD:1;iRNA_m5C:0.999536712157815 6291 chr1 153643775 153643775 1 + T C rs541478219 153643756 + 153643736 153643776 41 CGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATG CGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGACG < 41bp 1 0.0912655892738627 1 0.0175411701202393 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ILF2 ENSG00000143621 upstream Human protein_coding chr1:153643756 chr1:153643775 . . 0 40 hm5C_associated_SNPs_3098 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6291 DeepMRMD:1;iRNA_m5C:0.999536712157815 6292 chr1 153643775 153643775 1 + T C rs541478219 153643757 + 153643737 153643777 41 GCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGG GCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGACGG < 41bp 1 0.203254000864589 1 0.0207042098045349 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ILF2 ENSG00000143621 upstream Human protein_coding chr1:153643757 chr1:153643775 . . 0 39 hm5C_associated_SNPs_3099 0 0 1 0 0 Cytosol 1 0.50023164286644 1 0.999536714267119 hm5C_site_6292 DeepMRMD:1;iRNA_m5C:0.999536714267119 6293 chr1 153643775 153643775 1 + T C rs541478219 153643758 + 153643738 153643778 41 CAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGA CAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGACGGA < 41bp 1 0.370718889109944 1 0.055264800786972 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ILF2 ENSG00000143621 upstream Human protein_coding chr1:153643758 chr1:153643775 . . 0 38 hm5C_associated_SNPs_3100 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6293 DeepMRMD:1;iRNA_m5C:0.999536712157815 6294 chr1 153643775 153643775 1 + T C rs541478219 153643763 + 153643743 153643783 41 GAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAA GAAGCGTGCTGGGCCCATAACCCAGAGGTCGACGGATCGAA < 41bp 1 0.33572125609288 1 0.309136688709259 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ILF2 ENSG00000143621 upstream Human protein_coding chr1:153643763 chr1:153643775 . . 0 33 hm5C_associated_SNPs_3101 0 0 1 0 0 Cytosol 1 0.500231643920745 1 0.99953671215851 hm5C_site_6294 DeepMRMD:1;iRNA_m5C:0.99953671215851 6295 chr1 153643775 153643775 1 + T C rs541478219 153643764 + 153643744 153643784 41 AAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAA AAGCGTGCTGGGCCCATAACCCAGAGGTCGACGGATCGAAA < 41bp 1 0.685700619100094 1 0.841948509216309 experiment 0.628598761799812 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ILF2 ENSG00000143621 upstream Human protein_coding chr1:153643764 chr1:153643775 . . 0 32 hm5C_associated_SNPs_3102 0 0 1 0 0 Cytosol 1 0.500231635633693 0.316102981567382 0.999536728732614 hm5C_site_6295 DeepMRMD:0.316102981567382;iRNA_m5C:0.999536728732614 6296 chr1 153643775 153643775 1 + T C rs541478219 153643772 + 153643752 153643792 41 TGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTC TGGGCCCATAACCCAGAGGTCGACGGATCGAAACCATCCTC < 41bp 1 0.644367363903704 1 0.364901840686798 experiment 0.711265272192593 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|27356879;GSE66010;miCLIP;HEK293;Control ILF2 ENSG00000143621 upstream Human protein_coding chr1:153643772 chr1:153643775 . . 0 24 hm5C_associated_SNPs_3103 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_6296 DeepMRMD:1;iRNA_m5C:0.999536712157816 Total cholesterol levels 6297 chr1 153643775 153643775 1 + T C rs541478219 153643780 + 153643760 153643800 41 TAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTATCG TAACCCAGAGGTCGACGGATCGAAACCATCCTCTGCTATCG < 41bp 1 0.648861343779451 1 0.432787835597992 experiment 0.702277312441098 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|27356879;GSE66010;miCLIP;HEK293;Control ILF2 ENSG00000143621 upstream Human protein_coding chr1:153643780 chr1:153643775 . . 0 16 hm5C_associated_SNPs_3104 0 0 1 0 0 Cytosol 1 0.500231643920888 1 0.999536712158223 hm5C_site_6297 DeepMRMD:1;iRNA_m5C:0.999536712158223 6298 chr1 153643775 153643775 1 + T C rs541478219 153643785 + 153643765 153643805 41 CAGAGGTCGATGGATCGAAACCATCCTCTGCTATCGGAGTT CAGAGGTCGACGGATCGAAACCATCCTCTGCTATCGGAGTT < 41bp 1 0.043775799059126 1 0.0858750641345978 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|27356879;GSE66010;miCLIP;HEK293;Control ILF2 ENSG00000143621 upstream Human protein_coding chr1:153643785 chr1:153643775 . . 0 11 hm5C_associated_SNPs_3105 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6298 DeepMRMD:1;iRNA_m5C:0.999536712157815 6299 chr1 153643775 153643775 1 + T C rs541478219 153643786 + 153643766 153643806 41 AGAGGTCGATGGATCGAAACCATCCTCTGCTATCGGAGTTT AGAGGTCGACGGATCGAAACCATCCTCTGCTATCGGAGTTT < 41bp 1 0.137796182676041 1 0.0978776216506958 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|27356879;GSE66010;miCLIP;HEK293;Control ILF2 ENSG00000143621 upstream Human protein_coding chr1:153643786 chr1:153643775 . . 0 10 hm5C_associated_SNPs_3106 0 0 1 0 0 Cytosol 1 0.500231643918681 1 0.999536712162638 hm5C_site_6299 DeepMRMD:1;iRNA_m5C:0.999536712162638 6300 chr1 153643775 153643775 1 + T C rs541478219 153643789 + 153643769 153643809 41 GGTCGATGGATCGAAACCATCCTCTGCTATCGGAGTTTTTT GGTCGACGGATCGAAACCATCCTCTGCTATCGGAGTTTTTT < 41bp 1 0.0584891178170637 1 0.0216858983039856 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|27356879;GSE66010;miCLIP;HEK293;Control ILF2 ENSG00000143621 upstream Human protein_coding chr1:153643789 chr1:153643775 . . 0 7 hm5C_associated_SNPs_3107 0 0 1 0 0 Cytosol 1 0.500231643921078 1 0.999536712157844 hm5C_site_6300 DeepMRMD:1;iRNA_m5C:0.999536712157844 6301 chr1 153643775 153643775 1 + T C rs541478219 153643790 + 153643770 153643810 41 GTCGATGGATCGAAACCATCCTCTGCTATCGGAGTTTTTTC GTCGACGGATCGAAACCATCCTCTGCTATCGGAGTTTTTTC < 41bp 1 0.276421405058735 1 0.0295112133026123 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|27356879;GSE66010;miCLIP;HEK293;Control ILF2 ENSG00000143621 upstream Human protein_coding chr1:153643790 chr1:153643775 . . 0 6 hm5C_associated_SNPs_3108 0 0 1 0 0 Cytosol 1 0.500231645327838 1 0.999536709344323 hm5C_site_6301 DeepMRMD:1;iRNA_m5C:0.999536709344323 6302 chr1 153643775 153643775 1 + T C rs541478219 153643792 + 153643772 153643812 41 CGATGGATCGAAACCATCCTCTGCTATCGGAGTTTTTTCAT CGACGGATCGAAACCATCCTCTGCTATCGGAGTTTTTTCAT < 41bp 1 0.49035794736507 1 0.488946050405502 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ILF2 ENSG00000143621 upstream Human protein_coding chr1:153643792 chr1:153643775 . . 0 4 hm5C_associated_SNPs_3109 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6302 DeepMRMD:1;iRNA_m5C:0.999536712157815 6303 chr1 153643775 153643775 1 + T C rs541478219 153643795 + 153643775 153643815 41 TGGATCGAAACCATCCTCTGCTATCGGAGTTTTTTCATTGC CGGATCGAAACCATCCTCTGCTATCGGAGTTTTTTCATTGC < 41bp 1 0.047342733603972 1 0.153307348489761 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ILF2 ENSG00000143621 upstream Human protein_coding chr1:153643795 chr1:153643775 . . 0 1 hm5C_associated_SNPs_3110 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_6303 DeepMRMD:1;iRNA_m5C:0.999536712157816 6304 chr1 153700661 153700661 1 + C T rs185043588 153700652 + 153700632 153700672 41 AGGGGCCGGATCCAAAGGCGCTGCACTCCCCAAGCCTTGGG AGGGGCCGGATCCAAAGGCGCTGCACTCCTCAAGCCTTGGG < 41bp 1 0.530451953183745 1 0.230172395706177 experiment 0.93909609363251 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INTS3 ENSG00000143624 UTR5 Human protein_coding chr1:153700652 chr1:153700661 . . 0 30 hm5C_associated_SNPs_3111 0 0 0 0 1 chromatin 1 0.500231641363391 1 0.999536717273219 hm5C_site_6304 DeepMRMD:1;iRNA_m5C:0.999536717273219 6305 chr1 153750339 153750339 1 + G A rs77673307 153750343 + 153750323 153750363 41 ATTGGGGAGCTGTGCCGATACCTTGTCAACCAGCCCCCGGT ATTGGGGAGCTGTGCCAATACCTTGTCAACCAGCCCCCGGT < 41bp 1 0.27113893117988 1 0.161472916603088 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750343 chr1:153750339 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_3112 0 0 0 0 1 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_6305 DeepMRMD:1;iRNA_m5C:0.999536712157815 6306 chr1 153750650 153750650 1 + G A rs35102232 153750644 + 153750624 153750664 41 CCACTCATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCC CCACTCATCTCAGAGCAAGGCAGAACATGGCCATAAGGTCC < 41bp 1 0.571045305011798 1 0.359533965587616 experiment 0.857909389976405 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750644 chr1:153750650 nonsynonymous SNV 0.082 0 27 hm5C_associated_SNPs_3113 0 0 0 0 1 nucleoplasm 1 0.500232003260915 1 0.999535993478169 hm5C_site_6306 DeepMRMD:1;iRNA_m5C:0.999535993478169 6307 chr1 153750650 153750650 1 + G A rs35102232 153750649 + 153750629 153750669 41 CATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTG CATCTCAGAGCAAGGCAGAACATGGCCATAAGGTCCGGCTG < 41bp 1 0.548797198974784 1 0.446226626634598 experiment 0.902405602050432 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750649 chr1:153750650 nonsynonymous SNV 0.082 0 22 hm5C_associated_SNPs_3114 0 0 0 0 1 nucleoplasm 1 0.500231643921098 1 0.999536712157804 hm5C_site_6307 DeepMRMD:1;iRNA_m5C:0.999536712157804 6308 chr1 153750650 153750650 1 + G A rs35102232 153750655 + 153750635 153750675 41 AGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTGGCAGTG AGAGCAAGGCAGAACATGGCCATAAGGTCCGGCTGGCAGTG < 41bp 1 0.532118945981695 1 0.133196800947189 experiment 0.935762108036611 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750655 chr1:153750650 nonsynonymous SNV 0.082 0 16 hm5C_associated_SNPs_3115 0 0 0 0 1 nucleoplasm 1 0.500231645880043 1 0.999536708239914 hm5C_site_6308 DeepMRMD:1;iRNA_m5C:0.999536708239914 6309 chr1 153750650 153750650 1 + G A rs35102232 153750663 + 153750643 153750683 41 GCAGAACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG GCAGAACATGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG < 41bp 1 0.470408136637252 1 0.413161635398865 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750663 chr1:153750650 nonsynonymous SNV 0.082 0 8 hm5C_associated_SNPs_3116 0 0 0 0 1 nucleoplasm 1 0.500231646992825 1 0.99953670601435 hm5C_site_6309 DeepMRMD:1;iRNA_m5C:0.99953670601435 6310 chr1 153750650 153750650 1 + G A rs35102232 153750667 + 153750647 153750687 41 AACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG AACATGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG < 41bp 1 0.363500217725206 1 0.0986951291561127 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750667 chr1:153750650 nonsynonymous SNV 0.082 0 4 hm5C_associated_SNPs_3117 0 0 0 0 1 nucleoplasm 1 0.500231643854708 1 0.999536712290584 hm5C_site_6310 DeepMRMD:1;iRNA_m5C:0.999536712290584 6311 chr1 153750665 153750665 1 + G A rs141932545 153750649 + 153750629 153750669 41 CATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTG CATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCCAGCTG < 41bp 1 0.564954610977087 1 0.430969476699829 experiment 0.870090778045826 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750649 chr1:153750665 nonsynonymous SNV 0.985 4 37 hm5C_associated_SNPs_3118 0 0 0 0 1 nucleoplasm 1 0.500231643921093 1 0.999536712157814 hm5C_site_6311 DeepMRMD:1;iRNA_m5C:0.999536712157814 6312 chr1 153750665 153750665 1 + G A rs141932545 153750655 + 153750635 153750675 41 AGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTGGCAGTG AGAGCAAGGCAGAACGTGGCCATAAGGTCCAGCTGGCAGTG < 41bp 1 0.574251335085471 1 0.100826799869537 experiment 0.851497329829058 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750655 chr1:153750665 nonsynonymous SNV 0.985 4 31 hm5C_associated_SNPs_3119 0 0 0 0 1 nucleoplasm 1 0.500231644424211 1 0.999536711151577 hm5C_site_6312 DeepMRMD:1;iRNA_m5C:0.999536711151577 6313 chr1 153750665 153750665 1 + G A rs141932545 153750663 + 153750643 153750683 41 GCAGAACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG GCAGAACGTGGCCATAAGGTCCAGCTGGCAGTGGGCAGCGG < 41bp 1 0.350986247041877 1 0.178392231464386 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750663 chr1:153750665 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_3120 0 0 0 0 1 nucleoplasm 1 0.500231643277946 1 0.999536713444108 hm5C_site_6313 DeepMRMD:1;iRNA_m5C:0.999536713444108 6314 chr1 153750665 153750665 1 + G A rs141932545 153750667 + 153750647 153750687 41 AACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG AACGTGGCCATAAGGTCCAGCTGGCAGTGGGCAGCGGGCTG < 41bp 1 0.449089270600306 1 0.245372503995895 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750667 chr1:153750665 nonsynonymous SNV 0.985 4 19 hm5C_associated_SNPs_3121 0 0 0 0 1 nucleoplasm 1 0.500239052513657 1 0.999521894972686 hm5C_site_6314 DeepMRMD:1;iRNA_m5C:0.999521894972686 6315 chr1 153750682 153750682 1 + G A rs146128753 153750663 + 153750643 153750683 41 GCAGAACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG GCAGAACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCAG < 41bp 1 0.512947555990462 1 0.424872815608978 experiment 0.974104888019077 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750663 chr1:153750682 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_3124 0 0 0 0 1 nucleoplasm 1 0.500231643934363 1 0.999536712131273 hm5C_site_6315 DeepMRMD:1;iRNA_m5C:0.999536712131273 6316 chr1 153750682 153750682 1 + G A rs146128753 153750667 + 153750647 153750687 41 AACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG AACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCAGGCTG < 41bp 1 0.354689670781886 1 0.155017614364624 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750667 chr1:153750682 nonsynonymous SNV 0.999 4 36 hm5C_associated_SNPs_3125 0 0 0 0 1 nucleoplasm 1 0.500231643921093 1 0.999536712157814 hm5C_site_6316 DeepMRMD:1;iRNA_m5C:0.999536712157814 6317 chr1 153750682 153750682 1 + G A rs146128753 153750688 + 153750668 153750708 41 TGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAGCGT TGGCAGTGGGCAGCAGGCTGCGCCCAGATACCTGGGAGCGT < 41bp 1 0.428344016102439 1 0.160579681396484 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750688 chr1:153750682 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_3126 0 0 0 0 1 nucleoplasm 1 0.500231643647691 1 0.999536712704617 hm5C_site_6317 DeepMRMD:1;iRNA_m5C:0.999536712704617 6318 chr1 153750706 153750706 1 + C T rs375994470 153750688 + 153750668 153750708 41 TGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAGCGT TGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAGTGT < 41bp 1 0.383703762204572 1 0.153698623180389 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750688 chr1:153750706 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_3127 0 0 0 0 1 nucleoplasm 1 0.50023164396939 1 0.999536712061221 hm5C_site_6318 DeepMRMD:1;iRNA_m5C:0.999536712061221 6319 chr1 153946189 153946189 1 + G A rs41265209 153946169 + 153946149 153946189 41 GAGTCGACCAGAAGCTGGGTCTGAGGATTACCAGCCTCACG GAGTCGACCAGAAGCTGGGTCTGAGGATTACCAGCCTCACA < 41bp 1 0.567252571203413 1 0.0929358899593353 experiment 0.865494857593174 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153946169 chr1:153946189 nonsynonymous SNV 0.918 2 41 hm5C_associated_SNPs_3128 0 0 0 0 2 exosome 1 0.500289736108283 1 0.999420527783433 hm5C_site_6319 DeepMRMD:1;iRNA_m5C:0.999420527783433 6320 chr1 154232212 154232212 1 + C T rs530748291 154232218 + 154232198 154232238 41 CAAGTGGGCATACCCGTAGACCTTGTCTGACTGTGCTCATG CAAGTGGGCATACCTGTAGACCTTGTCTGACTGTGCTCATG < 41bp 1 0.0292997205272911 1 0.00988137722015381 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA58B ENSG00000201129 ncRNA_exonic Human snoRNA chr1:154232218 chr1:154232212 . . 0 15 hm5C_associated_SNPs_3129 0 0 1 0 0 unknown 1 0.500231643920861 1 0.999536712158279 hm5C_site_6320 DeepMRMD:1;iRNA_m5C:0.999536712158279 6321 chr1 154232212 154232212 1 + C T rs530748291 154232228 + 154232208 154232248 41 TACCCGTAGACCTTGTCTGACTGTGCTCATGGCCAGGCAGG TACCTGTAGACCTTGTCTGACTGTGCTCATGGCCAGGCAGG < 41bp 1 0.142650799976677 1 0.0848335325717926 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA58B ENSG00000201129 ncRNA_exonic Human snoRNA chr1:154232228 chr1:154232212 . . 0 5 hm5C_associated_SNPs_3130 0 0 1 0 0 unknown 1 0.500231643923809 1 0.999536712152381 hm5C_site_6321 DeepMRMD:1;iRNA_m5C:0.999536712152381 6322 chr1 154232256 154232256 1 + G C rs374645971 154232240 + 154232220 154232260 41 TTGTCTGACTGTGCTCATGGCCAGGCAGGGGGGACAGTGTA TTGTCTGACTGTGCTCATGGCCAGGCAGGGGGGACACTGTA < 41bp 1 0.16994849647895 1 0.220600724220276 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA58B ENSG00000201129 ncRNA_exonic Human snoRNA chr1:154232240 chr1:154232256 . . 0 37 hm5C_associated_SNPs_3131 0 0 1 0 0 unknown 1 0.500231643926317 1 0.999536712147366 hm5C_site_6322 DeepMRMD:1;iRNA_m5C:0.999536712147366 6323 chr1 154232256 154232256 1 + G C rs374645971 154232241 + 154232221 154232261 41 TGTCTGACTGTGCTCATGGCCAGGCAGGGGGGACAGTGTAT TGTCTGACTGTGCTCATGGCCAGGCAGGGGGGACACTGTAT < 41bp 1 0.324306102488242 1 0.776765465736389 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA58B ENSG00000201129 ncRNA_exonic Human snoRNA chr1:154232241 chr1:154232256 . . 0 36 hm5C_associated_SNPs_3132 0 0 1 0 0 unknown 1 0.500231644953672 0.446469068527222 0.999536710092655 hm5C_site_6323 DeepMRMD:0.446469068527222;iRNA_m5C:0.999536710092655 6324 chr1 154232256 154232256 1 + G C rs374645971 154232245 + 154232225 154232265 41 TGACTGTGCTCATGGCCAGGCAGGGGGGACAGTGTATGCAA TGACTGTGCTCATGGCCAGGCAGGGGGGACACTGTATGCAA < 41bp 1 0.635943922570914 1 0.841189622879028 experiment 0.728112154858172 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA58B ENSG00000201129 ncRNA_exonic Human snoRNA chr1:154232245 chr1:154232256 . . 0 32 hm5C_associated_SNPs_3133 0 0 1 0 0 unknown 1 0.500231722503323 0.317620754241944 0.999536554993354 hm5C_site_6324 DeepMRMD:0.317620754241944;iRNA_m5C:0.999536554993354 6325 chr1 154303934 154303934 1 + C T rs139970814 154303952 + 154303932 154303972 41 AGCGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT AGTGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT < 41bp 1 0.185155347454673 1 0.0452964305877686 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154303952 chr1:154303934 synonymous SNV . 0 3 hm5C_associated_SNPs_3134 0 0 1 0 2 chromatin 1 0.500231643747055 1 0.99953671250589 hm5C_site_6325 DeepMRMD:1;iRNA_m5C:0.99953671250589 6326 chr1 154317153 154317153 1 + C T rs1194587 154317162 + 154317142 154317182 41 TCATCCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA TCATCCCGCTCTGTAGGCAACGGCTTCACCTATCAGGACAA < 41bp 1 0.307349756505163 1 0.343982636928558 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317162 chr1:154317153 synonymous SNV . 0 12 hm5C_associated_SNPs_3135 0 0 1 0 1 chromatin 1 0.500231649753026 1 0.999536700493947 hm5C_site_6326 DeepMRMD:1;iRNA_m5C:0.999536700493947 6327 chr1 154947213 154947213 1 + C T rs138322198 154947230 + 154947210 154947250 41 AACCGAGCGATCATGTCGCACAAACAAATTTACTATTCGGA AACTGAGCGATCATGTCGCACAAACAAATTTACTATTCGGA < 41bp 1 0.0837209330014537 1 0.122836500406265 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS1B ENSG00000173207 UTR5 Human protein_coding chr1:154947230 chr1:154947213 . . 0 4 hm5C_associated_SNPs_3136 0 0 1 0 1 Ribosome 1 0.500231865447163 1 0.999536269105674 hm5C_site_6327 DeepMRMD:1;iRNA_m5C:0.999536269105674 6328 chr1 154951586 154951586 1 + T C rs185916119 154951573 + 154951553 154951593 41 ACCATGGCTGTTACAGGGATCATGTAAACTTGCTGTTTTTG ACCATGGCTGTTACAGGGATCATGTAAACTTGCCGTTTTTG < 41bp 1 0.232107360666752 1 0.552234292030334 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CKS1B ENSG00000173207 UTR3 Human protein_coding chr1:154951573 chr1:154951586 . . 0 34 hm5C_associated_SNPs_3137 0 0 1 0 0 Ribosome 1 0.500239995580876 0.895531415939332 0.999520008838249 hm5C_site_6328 DeepMRMD:0.895531415939332;iRNA_m5C:0.999520008838249 6329 chr1 154951586 154951586 1 + T C rs185916119 154951601 + 154951581 154951621 41 CTTGCTGTTTTTGTTTTTTCCTGCCGGGTGTTGTATGTGTG CTTGCCGTTTTTGTTTTTTCCTGCCGGGTGTTGTATGTGTG < 41bp 1 0.352162268050627 1 0.147113770246506 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CKS1B ENSG00000173207 UTR3 Human protein_coding chr1:154951601 chr1:154951586 . . 0 6 hm5C_associated_SNPs_3138 0 0 1 0 0 Ribosome 1 0.500231643773801 1 0.999536712452399 hm5C_site_6329 DeepMRMD:1;iRNA_m5C:0.999536712452399 6330 chr1 154975369 154975369 1 + C T rs538492632 154975363 + 154975343 154975383 41 CGGGCCTGGTGGGGGACGCGCTTCTTCCCACACTGTGAGCC CGGGCCTGGTGGGGGACGCGCTTCTTTCCACACTGTGAGCC < 41bp 1 0.405091993565085 1 0.21152937412262 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975363 chr1:154975369 . . 0 27 hm5C_associated_SNPs_3139 0 0 0 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_6330 DeepMRMD:1;iRNA_m5C:0.999536712157815 6331 chr1 154975369 154975369 1 + C T rs538492632 154975366 + 154975346 154975386 41 GCCTGGTGGGGGACGCGCTTCTTCCCACACTGTGAGCCTCA GCCTGGTGGGGGACGCGCTTCTTTCCACACTGTGAGCCTCA < 41bp 1 0.0994272361108917 1 0.118092954158783 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975366 chr1:154975369 . . 0 24 hm5C_associated_SNPs_3140 0 0 0 0 2 chromatin 1 0.500232086214186 1 0.999535827571627 hm5C_site_6331 DeepMRMD:1;iRNA_m5C:0.999535827571627 6332 chr1 154975369 154975369 1 + C T rs538492632 154975371 + 154975351 154975391 41 GTGGGGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCAGC GTGGGGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCAGC < 41bp 1 0.536662978871433 1 0.404222726821899 experiment 0.926674042257135 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975371 chr1:154975369 . . 0 19 hm5C_associated_SNPs_3142 0 0 0 0 2 chromatin 1 0.500231742677853 1 0.999536514644294 hm5C_site_6332 DeepMRMD:1;iRNA_m5C:0.999536514644294 6333 chr1 154975369 154975369 1 + C T rs538492632 154975373 + 154975353 154975393 41 GGGGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCAGCTC GGGGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCAGCTC < 41bp 1 0.647589847295496 1 0.108869999647141 experiment 0.704820305409007 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975373 chr1:154975369 . . 0 17 hm5C_associated_SNPs_3143 0 0 0 0 2 chromatin 1 0.500232140288543 1 0.999535719422913 hm5C_site_6333 DeepMRMD:1;iRNA_m5C:0.999535719422913 6334 chr1 154975369 154975369 1 + C T rs538492632 154975375 + 154975355 154975395 41 GGGACGCGCTTCTTCCCACACTGTGAGCCTCAGCAGCTCCA GGGACGCGCTTCTTTCCACACTGTGAGCCTCAGCAGCTCCA < 41bp 1 0.568846862960284 1 0.0922629237174988 experiment 0.862306274079431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975375 chr1:154975369 . . 0 15 hm5C_associated_SNPs_3144 0 0 0 0 2 chromatin 1 0.500246381346404 1 0.999507237307192 hm5C_site_6334 DeepMRMD:1;iRNA_m5C:0.999507237307192 6335 chr1 154975369 154975369 1 + C T rs538492632 154975382 + 154975362 154975402 41 GCTTCTTCCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCG GCTTCTTTCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCG < 41bp 1 0.246137179568811 1 0.0617737472057343 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975382 chr1:154975369 . . 0 8 hm5C_associated_SNPs_3145 0 0 0 0 2 chromatin 1 0.500231643047105 1 0.999536713905791 hm5C_site_6335 DeepMRMD:1;iRNA_m5C:0.999536713905791 6336 chr1 154975369 154975369 1 + C T rs538492632 154975383 + 154975363 154975403 41 CTTCTTCCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGG CTTCTTTCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGG < 41bp 1 0.314633018133558 1 0.233555942773819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975383 chr1:154975369 . . 0 7 hm5C_associated_SNPs_3146 0 0 0 0 2 chromatin 1 0.500216848454276 1 0.999566303091447 hm5C_site_6336 DeepMRMD:1;iRNA_m5C:0.999566303091447 6337 chr1 154975369 154975369 1 + C T rs538492632 154975388 + 154975368 154975408 41 TCCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGGACCCG TTCCACACTGTGAGCCTCAGCAGCTCCAGCCAGCGGACCCG < 41bp 1 0.505364019743185 1 0.0698620975017548 experiment 0.989271960513629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975388 chr1:154975369 . . 0 2 hm5C_associated_SNPs_3148 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_6337 DeepMRMD:1;iRNA_m5C:0.999536712157815 6338 chr1 154988870 154988870 1 + C T rs146374595 154988871 + 154988851 154988891 41 AGGCTTTCGCCAAGGAGGACCACCTGCAGCGCCACCTCAAA AGGCTTTCGCCAAGGAGGATCACCTGCAGCGCCACCTCAAA < 41bp 1 0.293710294656174 1 0.265378952026367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154988871 chr1:154988870 synonymous SNV . 0 20 hm5C_associated_SNPs_3149 0 0 1 0 0 chromatin 1 0.500231600671567 1 0.999536798656867 hm5C_site_6338 DeepMRMD:1;iRNA_m5C:0.999536798656867 6339 chr1 155023796 155023796 1 + C T rs193116209 155023808 + 155023788 155023828 41 CGACCTGGCCGCCGGCCGCTCCTCCGCGCGCTGTTCCGCAC CGACCTGGTCGCCGGCCGCTCCTCCGCGCGCTGTTCCGCAC < 41bp 1 0.181897721749699 1 0.191681981086731 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCST1-AS1 ENSG00000143537 UTR5 Human protein_coding chr1:155023808 chr1:155023796 . . 0 9 hm5C_associated_SNPs_3150 0 0 1 0 0 unknown 1 0.500231622961341 1 0.999536754077318 hm5C_site_6339 DeepMRMD:1;iRNA_m5C:0.999536754077318 6340 chr1 155032752 155032752 1 + A G rs61751624 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGCTTGGTGCCGGCTACTGGTACCGTGCCCG < 41bp 1 0.6231488131092 1 0.820893049240112 experiment 0.7537023737816 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032752 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_3151 0 0 1 0 2 Ribosome 1 0.500232036438011 0.358213901519776 0.999535927123978 hm5C_site_6340 DeepMRMD:0.358213901519776;iRNA_m5C:0.999535927123978 6341 chr1 155032771 155032771 1 + G A rs147260444 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCA < 41bp 1 0.560183814694781 1 0.556206524372101 experiment 0.879632370610438 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032771 nonsynonymous SNV 0.486 2 41 hm5C_associated_SNPs_3152 0 0 1 0 2 Ribosome 1 0.500236801886099 0.887586951255798 0.999526396227802 hm5C_site_6341 DeepMRMD:0.887586951255798;iRNA_m5C:0.999526396227802 6342 chr1 155033918 155033918 1 + C T rs41264285 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCTCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG < 41bp 1 0.23739428246856 1 0.370964527130127 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033918 nonsynonymous SNV 0.641 0 3 hm5C_associated_SNPs_3153 0 0 1 0 3 Ribosome 1 0.500231644300864 1 0.999536711398272 hm5C_site_6342 DeepMRMD:1;iRNA_m5C:0.999536711398272 6343 chr1 155033921 155033921 1 + C A rs199706846 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCACTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG < 41bp 1 0.241873619907485 1 0.305950582027435 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033921 nonsynonymous SNV 0.844 3 6 hm5C_associated_SNPs_3154 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6343 DeepMRMD:1;iRNA_m5C:0.999536712157815 6344 chr1 155033938 155033938 1 + G A rs199883535 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCCCTTCCAGGCCGCTGCCACCTGACCCTGTGTCCAAG < 41bp 1 0.142248822078377 1 0.145904302597046 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033938 nonsynonymous SNV 0.895 0 23 hm5C_associated_SNPs_3155 0 0 1 0 3 Ribosome 1 0.500232063690661 1 0.999535872618679 hm5C_site_6344 DeepMRMD:1;iRNA_m5C:0.999535872618679 6345 chr1 155106016 155106016 1 + G A rs6699434 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGAAGACCGCTGCTTGAGATTGAAGGT < 41bp 1 0.178426316883396 1 0.154070109128952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106016 synonymous SNV . 0 33 hm5C_associated_SNPs_3156 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643919763 1 0.999536712160473 hm5C_site_6345 DeepMRMD:1;iRNA_m5C:0.999536712160473 6346 chr1 155255659 155255659 1 + G A rs114620093 155255657 + 155255637 155255677 41 TCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAGATGTACT TCTCGTGGTGCGTGAGGGCTCCATGGGGAGGAAGATGTACT < 41bp 1 0.213907044900866 1 0.295972943305969 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HCN3 ENSG00000143630 CDS Human protein_coding chr1:155255657 chr1:155255659 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_3157 0 0 0 0 1 chromatin 1 0.500231643919903 1 0.999536712160195 hm5C_site_6346 DeepMRMD:1;iRNA_m5C:0.999536712160195 6347 chr1 155294613 155294613 1 + G A rs369563249 155294632 + 155294612 155294652 41 CGCGCCCTTCTTCCCTTACGCCAGTCCGTAGTTCGTGGTCC CACGCCCTTCTTCCCTTACGCCAGTCCGTAGTTCGTGGTCC < 41bp 1 0.0630932205074133 1 0.13220277428627 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RUSC1 ENSG00000160753 UTR5 Human protein_coding chr1:155294632 chr1:155294613 . . 0 2 hm5C_associated_SNPs_3158 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_6347 DeepMRMD:1;iRNA_m5C:0.999536712157814 6348 chr1 155583296 155583296 1 + T C rs112258960 155583316 + 155583296 155583336 41 TGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACA CGTACCACTGGGGAAGAAATCTTGGCTCAGTATTTACAACA < 41bp 1 0.680086465603529 1 0.486132115125656 experiment 0.639827068792941 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583316 chr1:155583296 nonsynonymous SNV 0.004 3 1 hm5C_associated_SNPs_3159 0 0 0 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6348 DeepMRMD:1;iRNA_m5C:0.999536712157815 6349 chr1 155717110 155717110 1 + G A rs568945103 155717127 + 155717107 155717147 41 ACAGAGGCCAGCATCAGGGTCTGGTCAGACTTCCTCAGAGT ACAAAGGCCAGCATCAGGGTCTGGTCAGACTTCCTCAGAGT < 41bp 1 0.394603913487141 1 0.10405445098877 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MSTO2P ENSG00000203761 ncRNA_exonic Human unprocessed_pseudogene chr1:155717127 chr1:155717110 . . 0 4 hm5C_associated_SNPs_3160 0 0 0 0 2 unknown 1 0.500640260104961 1 0.998719479790078 hm5C_site_6349 DeepMRMD:1;iRNA_m5C:0.998719479790078 6350 chr1 155852123 155852123 1 + C T rs729022 155852142 + 155852122 155852162 41 CCATCTTTTCTTTTTATTGCCTCTTATATCTCTGCTCTTTG CTATCTTTTCTTTTTATTGCCTCTTATATCTCTGCTCTTTG < 41bp 1 0.0757343898898675 1 0.0207990407943726 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYT11 ENSG00000132718 UTR3 Human protein_coding chr1:155852142 chr1:155852123 . . 0 2 hm5C_associated_SNPs_3161 0 0 1 0 0 Nucleus 1 0.500232545258209 1 0.999534909483582 hm5C_site_6350 DeepMRMD:1;iRNA_m5C:0.999534909483582 6351 chr1 155854588 155854588 1 + A G rs188404705 155854589 + 155854569 155854609 41 CAGTTCATCTCACTGGAGCACAGCCAAGATGGACATGTTTA CAGTTCATCTCACTGGAGCGCAGCCAAGATGGACATGTTTA < 41bp 1 0.44958218745762 1 0.206717789173126 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYT11 ENSG00000132718 UTR3 Human protein_coding chr1:155854589 chr1:155854588 . . 0 20 hm5C_associated_SNPs_3162 0 0 1 0 0 Nucleus 1 0.500231643921062 1 0.999536712157877 hm5C_site_6351 DeepMRMD:1;iRNA_m5C:0.999536712157877 6352 chr1 156096691 156096691 1 + A G rs148559653 156096700 + 156096680 156096720 41 GACACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGG GACACGGGCGAGGCCAGGGTCTCCCCTGTGAGCACTAGAGG < 41bp 1 0.237345220829446 1 0.499133080244064 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096700 chr1:156096691 nonsynonymous SNV 0.125 1 12 hm5C_associated_SNPs_3163 0 0 0 0 1 Cytosol 1 0.50023164708256 1 0.99953670583488 hm5C_site_6352 DeepMRMD:1;iRNA_m5C:0.99953670583488 6353 chr1 156096691 156096691 1 + A G rs148559653 156096703 + 156096683 156096723 41 ACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT ACGGGCGAGGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT < 41bp 1 0.143165366356821 1 0.110799074172974 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096703 chr1:156096691 nonsynonymous SNV 0.125 1 9 hm5C_associated_SNPs_3164 0 0 0 0 1 Cytosol 1 0.500231643922393 1 0.999536712155214 hm5C_site_6353 DeepMRMD:1;iRNA_m5C:0.999536712155214 6354 chr1 156096691 156096691 1 + A G rs148559653 156096704 + 156096684 156096724 41 CGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT CGGGCGAGGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT < 41bp 1 0.207638449433598 1 0.106331944465637 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096704 chr1:156096691 nonsynonymous SNV 0.125 1 8 hm5C_associated_SNPs_3165 0 0 0 0 1 Cytosol 1 0.500230840177663 1 0.999538319644673 hm5C_site_6354 DeepMRMD:1;iRNA_m5C:0.999538319644673 6355 chr1 156096691 156096691 1 + A G rs148559653 156096705 + 156096685 156096725 41 GGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC GGGCGAGGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC < 41bp 1 0.366605853394152 1 0.133199691772461 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096705 chr1:156096691 nonsynonymous SNV 0.125 1 7 hm5C_associated_SNPs_3166 0 0 0 0 1 Cytosol 1 0.500231643921433 1 0.999536712157134 hm5C_site_6355 DeepMRMD:1;iRNA_m5C:0.999536712157134 6356 chr1 156202173 156202173 1 + A C rs1052053 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATGACACAGCCAATCTATGACAAGTTTATA < 41bp 1 0.0356001774427484 1 0.14225235581398 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202173 nonsynonymous SNV 0.812 0 22 hm5C_associated_SNPs_3167 0 1 0 3 2 unknown 1 0.500231648265235 1 0.999536703469531 hm5C_site_6356 DeepMRMD:1;iRNA_m5C:0.999536703469531 6357 chr1 156351613 156351613 1 + C G rs201484566 156351618 + 156351598 156351638 41 TCCACATCCAAAATGCAGCGCTGGCTGGAGGGGTTGTGGTG TCCACATCCAAAATGGAGCGCTGGCTGGAGGGGTTGTGGTG < 41bp 1 0.401611669776158 1 0.154886066913605 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHBG ENSG00000132677 CDS Human protein_coding chr1:156351618 chr1:156351613 nonsynonymous SNV 0.945 3 16 hm5C_associated_SNPs_3168 0 0 0 0 1 Cytosol 1 0.500231643921155 1 0.999536712157689 hm5C_site_6357 DeepMRMD:1;iRNA_m5C:0.999536712157689 6358 chr1 156705634 156705634 1 + T C rs149632417 156705645 + 156705625 156705665 41 CAGCCTGGCTCTACTGCTTGCCCCACTGGTGGAGACGCTTA CAGCCTGGCCCTACTGCTTGCCCCACTGGTGGAGACGCTTA < 41bp 1 0.468882410677996 1 0.289534747600555 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156705645 chr1:156705634 nonsynonymous SNV 0.893 0 10 hm5C_associated_SNPs_3169 0 0 1 0 0 chromatin 1 0.500231643944537 1 0.999536712110925 hm5C_site_6358 DeepMRMD:1;iRNA_m5C:0.999536712110925 6359 chr1 156737321 156737321 1 + C G rs552053404 156737326 + 156737306 156737346 41 GAGGAGGCGGAGTGACTCGGCGGCCATTAGCTGTGTGTAGT GAGGAGGCGGAGTGAGTCGGCGGCCATTAGCTGTGTGTAGT < 41bp 1 0.386651470995607 1 0.621960341930389 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRCC ENSG00000143294 UTR5 Human protein_coding chr1:156737326 chr1:156737321 . . 0 16 hm5C_associated_SNPs_3170 0 0 1 0 0 Ribosome 1 0.500231643905918 0.756079316139222 0.999536712188165 hm5C_site_6359 DeepMRMD:0.756079316139222;iRNA_m5C:0.999536712188165 6360 chr1 156756603 156756603 1 + G A rs144879598 156756587 + 156756567 156756607 41 TCTTGCCCCTGTTGTGGGCACCACAACCACCACTCCGTCGC TCTTGCCCCTGTTGTGGGCACCACAACCACCACTCCATCGC < 41bp 1 0.462984564146133 1 0.0836064517498016 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756587 chr1:156756603 synonymous SNV . 0 37 hm5C_associated_SNPs_3171 0 0 1 0 0 Ribosome 1 0.500231503062192 1 0.999536993875616 hm5C_site_6360 DeepMRMD:1;iRNA_m5C:0.999536993875616 6361 chr1 156756603 156756603 1 + G A rs144879598 156756593 + 156756573 156756613 41 CCCTGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTG CCCTGTTGTGGGCACCACAACCACCACTCCATCGCCCTCTG < 41bp 1 0.201727640647388 1 0.0988052487373352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756593 chr1:156756603 synonymous SNV . 0 31 hm5C_associated_SNPs_3172 0 0 1 0 0 Ribosome 1 0.50023164392106 1 0.99953671215788 hm5C_site_6361 DeepMRMD:1;iRNA_m5C:0.99953671215788 6362 chr1 156756603 156756603 1 + G A rs144879598 156756596 + 156756576 156756616 41 TGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTGCTA TGTTGTGGGCACCACAACCACCACTCCATCGCCCTCTGCTA < 41bp 1 0.211601622667679 1 0.257475197315216 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756596 chr1:156756603 synonymous SNV . 0 28 hm5C_associated_SNPs_3173 0 0 1 0 0 Ribosome 1 0.500231643921333 1 0.999536712157334 hm5C_site_6362 DeepMRMD:1;iRNA_m5C:0.999536712157334 6363 chr1 156761543 156761543 1 + C A rs35929266 156761563 + 156761543 156761583 41 CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC AAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC < 41bp 1 0.513725059176556 1 0.478168904781342 experiment 0.972549881646888 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156761563 chr1:156761543 nonsynonymous SNV 0.986 1 1 hm5C_associated_SNPs_3174 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6363 DeepMRMD:1;iRNA_m5C:0.999536712157815 6364 chr1 156883194 156883194 1 + G A rs141857901 156883191 + 156883171 156883211 41 GTCCCCTCTTAGGTTCCAGGCCCGCTCTTTGCCAGCCTGCA GTCCCCTCTTAGGTTCCAGGCCCACTCTTTGCCAGCCTGCA < 41bp 1 0.038804564550302 1 0.0156864821910858 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883191 chr1:156883194 synonymous SNV . 0 24 hm5C_associated_SNPs_3175 0 0 0 0 1 cytosol 1 0.500231643921648 1 0.999536712156704 hm5C_site_6364 DeepMRMD:1;iRNA_m5C:0.999536712156704 6365 chr1 159171375 159171375 1 + G T rs376442480 159171373 + 159171353 159171393 41 GCAGACAACATGCAGCCATGCAGGGACCCAGGACTGTAACC GCAGACAACATGCAGCCATGCATGGACCCAGGACTGTAACC < 41bp 1 0.568949183392191 1 0.118625372648239 experiment 0.862101633215619 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control CADM3-AS1 ENSG00000225670 ncRNA_exonic Human antisense chr1:159171373 chr1:159171375 . . 0 23 hm5C_associated_SNPs_3176 0 0 0 0 0 unknown 1 0.500231643921045 1 0.99953671215791 hm5C_site_6365 DeepMRMD:1;iRNA_m5C:0.99953671215791 6366 chr1 160178356 160178356 1 + A G rs667306 160178351 + 160178331 160178371 41 AGCCCAGAGAGCAGATTTCTCCACGAGCCCTAAGGAAATCT AGCCCAGAGAGCAGATTTCTCCACGGGCCCTAAGGAAATCT < 41bp 1 0.340753051980612 1 0.358995199203491 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC729867 ENSG00000227741 ncRNA_intronic Human antisense chr1:160178351 chr1:160178356 . . 0 26 hm5C_associated_SNPs_3177 0 0 0 0 1 unknown 1 0.500231643924763 1 0.999536712150474 hm5C_site_6366 DeepMRMD:1;iRNA_m5C:0.999536712150474 6367 chr1 160323977 160323977 1 + A C rs143039637 160323975 + 160323955 160323995 41 TGCTGTCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCC TGCTGTCATCCTCAGGAGGCCACATCAGTCCCAGCCTCTCC < 41bp 1 0.328259409414053 1 0.110940903425217 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160323975 chr1:160323977 nonsynonymous SNV 0.052 1 23 hm5C_associated_SNPs_3178 0 0 1 0 1 Endoplasmic reticulum 1 0.500231796762614 1 0.999536406474771 hm5C_site_6367 DeepMRMD:1;iRNA_m5C:0.999536406474771 6368 chr1 161088000 161088000 1 + G A rs76502631 161088011 + 161087991 161088031 41 TCGGCCGCGGTGAATCCCACCTGCGGTGCTTTAACTTGTGT TCGGCCGCGATGAATCCCACCTGCGGTGCTTTAACTTGTGT < 41bp 1 0.288399316149599 1 0.269098818302155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIT1 ENSG00000158793 UTR5 Human protein_coding chr1:161088011 chr1:161088000 . . 0 10 hm5C_associated_SNPs_3179 0 0 1 0 1 nucleolus 1 0.500231645190978 1 0.999536709618045 hm5C_site_6368 DeepMRMD:1;iRNA_m5C:0.999536709618045 6369 chr1 161137807 161137807 1 + C A rs532136485 161137819 + 161137799 161137839 41 CTTCACCCCCCTTCTCCAAACCTCTGTTTTGGGCTGGGCTG CTTCACCCACCTTCTCCAAACCTCTGTTTTGGGCTGGGCTG < 41bp 1 0.0664032202148575 1 0.0614587068557739 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161137819 chr1:161137807 nonsynonymous SNV 0.964 5 9 hm5C_associated_SNPs_3180 0 0 1 0 1 Cytosol 1 0.500231643934732 1 0.999536712130537 hm5C_site_6369 DeepMRMD:1;iRNA_m5C:0.999536712130537 6370 chr1 161137807 161137807 1 + C A rs532136485 161137822 + 161137802 161137842 41 CACCCCCCTTCTCCAAACCTCTGTTTTGGGCTGGGCTGAGG CACCCACCTTCTCCAAACCTCTGTTTTGGGCTGGGCTGAGG < 41bp 1 0.20289270786887 1 0.087911456823349 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161137822 chr1:161137807 nonsynonymous SNV 0.964 5 6 hm5C_associated_SNPs_3181 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6370 DeepMRMD:1;iRNA_m5C:0.999536712157815 6371 chr1 161500937 161500937 1 + C T rs184807445 161500925 + 161500905 161500945 41 GTTGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGT GTTGGTGGTATAGTGGTGAGCATAGCTGCCTTTCAAGCAGT < 41bp 1 0.297341667410347 1 0.147422164678574 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500925 chr1:161500937 . . 0 33 hm5C_associated_SNPs_3182 0 0 1 0 0 unknown 1 0.50023161883911 1 0.999536762321781 hm5C_site_6371 DeepMRMD:1;iRNA_m5C:0.999536762321781 6372 chr1 161500937 161500937 1 + C T rs184807445 161500930 + 161500910 161500950 41 TGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTGACC TGGTATAGTGGTGAGCATAGCTGCCTTTCAAGCAGTTGACC < 41bp 1 0.418532685421722 1 0.370184600353241 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500930 chr1:161500937 . . 0 28 hm5C_associated_SNPs_3183 0 0 1 0 0 unknown 1 0.500232082682162 1 0.999535834635675 hm5C_site_6372 DeepMRMD:1;iRNA_m5C:0.999535834635675 6373 chr1 161500937 161500937 1 + C T rs184807445 161500933 + 161500913 161500953 41 TATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTGACCCGG TATAGTGGTGAGCATAGCTGCCTTTCAAGCAGTTGACCCGG < 41bp 1 0.0332686082945387 1 0.123465120792389 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500933 chr1:161500937 . . 0 25 hm5C_associated_SNPs_3184 0 0 1 0 0 unknown 1 0.500231644844686 1 0.999536710310628 hm5C_site_6373 DeepMRMD:1;iRNA_m5C:0.999536710310628 6374 chr1 161500937 161500937 1 + C T rs184807445 161500934 + 161500914 161500954 41 ATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTGACCCGGG ATAGTGGTGAGCATAGCTGCCTTTCAAGCAGTTGACCCGGG < 41bp 1 0.0595205565303004 1 0.0662382245063782 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500934 chr1:161500937 . . 0 24 hm5C_associated_SNPs_3185 0 0 1 0 0 unknown 1 0.500231643921175 1 0.999536712157649 hm5C_site_6374 DeepMRMD:1;iRNA_m5C:0.999536712157649 6375 chr1 161500937 161500937 1 + C T rs184807445 161500938 + 161500918 161500958 41 TGGTGAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTCG TGGTGAGCATAGCTGCCTTTCAAGCAGTTGACCCGGGTTCG < 41bp 1 0.542876838160584 1 0.464152961969376 experiment 0.914246323678832 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500938 chr1:161500937 . . 0 20 hm5C_associated_SNPs_3186 0 0 1 0 0 unknown 1 0.500231643027583 1 0.999536713944835 hm5C_site_6375 DeepMRMD:1;iRNA_m5C:0.999536713944835 6376 chr1 161500937 161500937 1 + C T rs184807445 161500942 + 161500922 161500962 41 GAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTCGATTC GAGCATAGCTGCCTTTCAAGCAGTTGACCCGGGTTCGATTC < 41bp 1 0.534659146221871 1 0.422440052032471 experiment 0.930681707556257 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500942 chr1:161500937 . . 0 16 hm5C_associated_SNPs_3187 0 0 1 0 0 unknown 1 0.500777301323777 1 0.998445397352446 hm5C_site_6376 DeepMRMD:1;iRNA_m5C:0.998445397352446 6377 chr1 161500937 161500937 1 + C T rs184807445 161500950 + 161500930 161500970 41 CTGCCTTCCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAA CTGCCTTTCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAA < 41bp 1 0.679851830501122 1 0.758940935134888 experiment 0.640296338997757 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500950 chr1:161500937 . . 0 8 hm5C_associated_SNPs_3188 0 0 1 0 0 unknown 1 0.500231643921095 0.482118129730224 0.999536712157811 hm5C_site_6377 DeepMRMD:0.482118129730224;iRNA_m5C:0.999536712157811 6378 chr1 161500937 161500937 1 + C T rs184807445 161500951 + 161500931 161500971 41 TGCCTTCCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAAC TGCCTTTCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAAC < 41bp 1 0.547852788167959 1 0.564927041530609 experiment 0.904294423664082 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500951 chr1:161500937 . . 0 7 hm5C_associated_SNPs_3189 0 0 1 0 0 unknown 1 0.500231643919978 0.870145916938782 0.999536712160045 hm5C_site_6378 DeepMRMD:0.870145916938782;iRNA_m5C:0.999536712160045 6379 chr1 161500937 161500937 1 + C T rs184807445 161500957 + 161500937 161500977 41 CCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAACGCAAGG TCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAACGCAAGG < 41bp 1 0.191575871992411 1 0.120516985654831 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500957 chr1:161500937 . . 0 1 hm5C_associated_SNPs_3190 0 0 1 0 0 unknown 1 0.500231643228691 1 0.999536713542619 hm5C_site_6379 DeepMRMD:1;iRNA_m5C:0.999536713542619 6380 chr1 161500947 161500947 1 + G A rs189663649 161500930 + 161500910 161500950 41 TGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTGACC TGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTAACC < 41bp 1 0.436100687239273 1 0.259073436260223 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500930 chr1:161500947 . . 0 38 hm5C_associated_SNPs_3191 0 0 1 0 0 unknown 1 0.500231642281415 1 0.999536715437169 hm5C_site_6380 DeepMRMD:1;iRNA_m5C:0.999536715437169 6381 chr1 161500947 161500947 1 + G A rs189663649 161500933 + 161500913 161500953 41 TATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTGACCCGG TATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTAACCCGG < 41bp 1 0.0215302141502436 1 0.275272011756897 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500933 chr1:161500947 . . 0 35 hm5C_associated_SNPs_3192 0 0 1 0 0 unknown 1 0.500231643919591 1 0.999536712160818 hm5C_site_6381 DeepMRMD:1;iRNA_m5C:0.999536712160818 6382 chr1 161500947 161500947 1 + G A rs189663649 161500934 + 161500914 161500954 41 ATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTGACCCGGG ATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTAACCCGGG < 41bp 1 0.11747257792568 1 0.13035324215889 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500934 chr1:161500947 . . 0 34 hm5C_associated_SNPs_3193 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157817 hm5C_site_6382 DeepMRMD:1;iRNA_m5C:0.999536712157817 6383 chr1 161500947 161500947 1 + G A rs189663649 161500937 + 161500917 161500957 41 GTGGTGAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTC GTGGTGAGCATAGCTGCCTTCCAAGCAGTTAACCCGGGTTC < 41bp 1 0.328853726546028 1 0.709209322929382 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500937 chr1:161500947 . . 0 31 hm5C_associated_SNPs_3194 0 0 1 0 0 unknown 1 0.500231644004059 0.581581354141236 0.999536711991881 hm5C_site_6383 DeepMRMD:0.581581354141236;iRNA_m5C:0.999536711991881 6384 chr1 161500947 161500947 1 + G A rs189663649 161500938 + 161500918 161500958 41 TGGTGAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTCG TGGTGAGCATAGCTGCCTTCCAAGCAGTTAACCCGGGTTCG < 41bp 1 0.472138875602176 1 0.375661075115204 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500938 chr1:161500947 . . 0 30 hm5C_associated_SNPs_3195 0 0 1 0 0 unknown 1 0.500231643918805 1 0.99953671216239 hm5C_site_6384 DeepMRMD:1;iRNA_m5C:0.99953671216239 6385 chr1 161500947 161500947 1 + G A rs189663649 161500942 + 161500922 161500962 41 GAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTCGATTC GAGCATAGCTGCCTTCCAAGCAGTTAACCCGGGTTCGATTC < 41bp 1 0.424681910482223 1 0.749776601791382 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500942 chr1:161500947 . . 0 26 hm5C_associated_SNPs_3196 0 0 1 0 0 unknown 1 0.500231643921113 0.500446796417236 0.999536712157774 hm5C_site_6385 DeepMRMD:0.500446796417236;iRNA_m5C:0.999536712157774 6386 chr1 161500947 161500947 1 + G A rs189663649 161500951 + 161500931 161500971 41 TGCCTTCCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAAC TGCCTTCCAAGCAGTTAACCCGGGTTCGATTCCCGGCCAAC < 41bp 1 0.623309567858599 1 0.630387187004089 experiment 0.753380864282802 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500951 chr1:161500947 . . 0 17 hm5C_associated_SNPs_3198 0 0 1 0 0 unknown 1 0.500231643921092 0.739225625991822 0.999536712157815 hm5C_site_6386 DeepMRMD:0.739225625991822;iRNA_m5C:0.999536712157815 6387 chr1 161500947 161500947 1 + G A rs189663649 161500957 + 161500937 161500977 41 CCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAACGCAAGG CCAAGCAGTTAACCCGGGTTCGATTCCCGGCCAACGCAAGG < 41bp 1 0.172415717527199 1 0.0888853371143341 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500957 chr1:161500947 . . 0 11 hm5C_associated_SNPs_3199 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157819 hm5C_site_6387 DeepMRMD:1;iRNA_m5C:0.999536712157819 6388 chr1 161500947 161500947 1 + G A rs189663649 161500962 + 161500942 161500982 41 CAGTTGACCCGGGTTCGATTCCCGGCCAACGCAAGGGTTTT CAGTTAACCCGGGTTCGATTCCCGGCCAACGCAAGGGTTTT < 41bp 1 0.367951838700065 1 0.399043262004852 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500962 chr1:161500947 . . 0 6 hm5C_associated_SNPs_3200 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_6388 DeepMRMD:1;iRNA_m5C:0.999536712157814 6389 chr1 161500947 161500947 1 + G A rs189663649 161500963 + 161500943 161500983 41 AGTTGACCCGGGTTCGATTCCCGGCCAACGCAAGGGTTTTT AGTTAACCCGGGTTCGATTCCCGGCCAACGCAAGGGTTTTT < 41bp 1 0.302215336327414 1 0.568613529205322 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500963 chr1:161500947 . . 0 5 hm5C_associated_SNPs_3201 0 0 1 0 0 unknown 1 0.500231643292089 0.862772941589356 0.999536713415821 hm5C_site_6389 DeepMRMD:0.862772941589356;iRNA_m5C:0.999536713415821 6390 chr1 161500947 161500947 1 + G A rs189663649 161500964 + 161500944 161500984 41 GTTGACCCGGGTTCGATTCCCGGCCAACGCAAGGGTTTTTG GTTAACCCGGGTTCGATTCCCGGCCAACGCAAGGGTTTTTG < 41bp 1 0.506581698829762 1 0.281544506549835 experiment 0.986836602340475 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500964 chr1:161500947 . . 0 4 hm5C_associated_SNPs_3202 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6390 DeepMRMD:1;iRNA_m5C:0.999536712157815 6391 chr1 161500947 161500947 1 + G A rs189663649 161500967 + 161500947 161500987 41 GACCCGGGTTCGATTCCCGGCCAACGCAAGGGTTTTTGTCT AACCCGGGTTCGATTCCCGGCCAACGCAAGGGTTTTTGTCT < 41bp 1 0.0391235791380819 1 0.226445108652115 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500967 chr1:161500947 . . 0 1 hm5C_associated_SNPs_3203 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_6391 DeepMRMD:1;iRNA_m5C:0.999536712157816 6392 chr1 161500971 161500971 1 + C A rs189592997 161500951 + 161500931 161500971 41 TGCCTTCCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAAC TGCCTTCCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAAA < 41bp 1 0.569033881053135 1 0.573756814002991 experiment 0.86193223789373 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500951 chr1:161500971 . . 0 41 hm5C_associated_SNPs_3204 0 0 1 0 0 unknown 1 0.500231643921092 0.852486371994018 0.999536712157816 hm5C_site_6392 DeepMRMD:0.852486371994018;iRNA_m5C:0.999536712157816 6393 chr1 161500971 161500971 1 + C A rs189592997 161500957 + 161500937 161500977 41 CCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAACGCAAGG CCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAAAGCAAGG < 41bp 1 0.155536115750527 1 0.0847126245498657 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500957 chr1:161500971 . . 0 35 hm5C_associated_SNPs_3205 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6393 DeepMRMD:1;iRNA_m5C:0.999536712157815 6394 chr1 161500971 161500971 1 + C A rs189592997 161500962 + 161500942 161500982 41 CAGTTGACCCGGGTTCGATTCCCGGCCAACGCAAGGGTTTT CAGTTGACCCGGGTTCGATTCCCGGCCAAAGCAAGGGTTTT < 41bp 1 0.359715976342473 1 0.464684218168259 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500962 chr1:161500971 . . 0 30 hm5C_associated_SNPs_3206 0 0 1 0 0 unknown 1 0.500231643921178 1 0.999536712157643 hm5C_site_6394 DeepMRMD:1;iRNA_m5C:0.999536712157643 6395 chr1 161500971 161500971 1 + C A rs189592997 161500963 + 161500943 161500983 41 AGTTGACCCGGGTTCGATTCCCGGCCAACGCAAGGGTTTTT AGTTGACCCGGGTTCGATTCCCGGCCAAAGCAAGGGTTTTT < 41bp 1 0.31557827829069 1 0.536962151527405 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500963 chr1:161500971 . . 0 29 hm5C_associated_SNPs_3207 0 0 1 0 0 unknown 1 0.500231643921091 0.92607569694519 0.999536712157818 hm5C_site_6395 DeepMRMD:0.92607569694519;iRNA_m5C:0.999536712157818 6396 chr1 161500971 161500971 1 + C A rs189592997 161500964 + 161500944 161500984 41 GTTGACCCGGGTTCGATTCCCGGCCAACGCAAGGGTTTTTG GTTGACCCGGGTTCGATTCCCGGCCAAAGCAAGGGTTTTTG < 41bp 1 0.520010242476245 1 0.309808999300003 experiment 0.959979515047511 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500964 chr1:161500971 . . 0 28 hm5C_associated_SNPs_3208 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_6396 DeepMRMD:1;iRNA_m5C:0.999536712157815 6397 chr1 161500971 161500971 1 + C A rs189592997 161500967 + 161500947 161500987 41 GACCCGGGTTCGATTCCCGGCCAACGCAAGGGTTTTTGTCT GACCCGGGTTCGATTCCCGGCCAAAGCAAGGGTTTTTGTCT < 41bp 1 0.186113031768337 1 0.425042659044266 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500967 chr1:161500971 . . 0 25 hm5C_associated_SNPs_3209 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6397 DeepMRMD:1;iRNA_m5C:0.999536712157815 6398 chr1 161500971 161500971 1 + C A rs189592997 161500968 + 161500948 161500988 41 ACCCGGGTTCGATTCCCGGCCAACGCAAGGGTTTTTGTCTT ACCCGGGTTCGATTCCCGGCCAAAGCAAGGGTTTTTGTCTT < 41bp 1 0.344114787476187 1 0.512567043304443 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA6;FCGR3A ENSG00000273112 ncRNA_intronic Human processed_transcript chr1:161500968 chr1:161500971 . . 0 24 hm5C_associated_SNPs_3210 0 0 1 0 0 unknown 1 0.500231643921092 0.974865913391114 0.999536712157815 hm5C_site_6398 DeepMRMD:0.974865913391114;iRNA_m5C:0.999536712157815 6399 chr1 161582533 161582533 1 + A C rs73026086 161582530 + 161582510 161582550 41 GTTGGTGGTGTAGTGGTGAGCACAGCTGCCTTTCAAGCAGT GTTGGTGGTGTAGTGGTGAGCACCGCTGCCTTTCAAGCAGT < 41bp 1 0.652516259368413 1 0.366532742977142 experiment 0.694967481263174 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582530 chr1:161582533 . . 0 24 hm5C_associated_SNPs_3211 0 0 1 0 0 unknown 1 0.500231643913547 1 0.999536712172907 hm5C_site_6399 DeepMRMD:1;iRNA_m5C:0.999536712172907 6400 chr1 161582533 161582533 1 + A C rs73026086 161582535 + 161582515 161582555 41 TGGTGTAGTGGTGAGCACAGCTGCCTTTCAAGCAGTTAACG TGGTGTAGTGGTGAGCACCGCTGCCTTTCAAGCAGTTAACG < 41bp 1 0.296071001240686 1 0.333885788917542 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582535 chr1:161582533 . . 0 19 hm5C_associated_SNPs_3212 0 0 1 0 0 unknown 1 0.500231517105548 1 0.999536965788903 hm5C_site_6400 DeepMRMD:1;iRNA_m5C:0.999536965788903 6401 chr1 161582533 161582533 1 + A C rs73026086 161582539 + 161582519 161582559 41 GTAGTGGTGAGCACAGCTGCCTTTCAAGCAGTTAACGCGGG GTAGTGGTGAGCACCGCTGCCTTTCAAGCAGTTAACGCGGG < 41bp 1 0.0544127382565626 1 0.0787157714366913 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582539 chr1:161582533 . . 0 15 hm5C_associated_SNPs_3213 0 0 1 0 0 unknown 1 0.500231644023163 1 0.999536711953674 hm5C_site_6401 DeepMRMD:1;iRNA_m5C:0.999536711953674 6402 chr1 161582537 161582537 1 + G A rs528054926 161582530 + 161582510 161582550 41 GTTGGTGGTGTAGTGGTGAGCACAGCTGCCTTTCAAGCAGT GTTGGTGGTGTAGTGGTGAGCACAGCTACCTTTCAAGCAGT < 41bp 1 0.577571987574246 1 0.522678852081299 experiment 0.844856024851509 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582530 chr1:161582537 . . 0 28 hm5C_associated_SNPs_3214 0 0 1 0 0 unknown 1 0.5002316412921 0.954642295837402 0.999536717415799 hm5C_site_6402 DeepMRMD:0.954642295837402;iRNA_m5C:0.999536717415799 6403 chr1 161582537 161582537 1 + G A rs528054926 161582535 + 161582515 161582555 41 TGGTGTAGTGGTGAGCACAGCTGCCTTTCAAGCAGTTAACG TGGTGTAGTGGTGAGCACAGCTACCTTTCAAGCAGTTAACG < 41bp 1 0.197642502345231 1 0.19240215420723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582535 chr1:161582537 . . 0 23 hm5C_associated_SNPs_3215 0 0 1 0 0 unknown 1 0.500228899894605 1 0.99954220021079 hm5C_site_6403 DeepMRMD:1;iRNA_m5C:0.99954220021079 6404 chr1 161582537 161582537 1 + G A rs528054926 161582539 + 161582519 161582559 41 GTAGTGGTGAGCACAGCTGCCTTTCAAGCAGTTAACGCGGG GTAGTGGTGAGCACAGCTACCTTTCAAGCAGTTAACGCGGG < 41bp 1 0.0678515726190023 1 0.11850893497467 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582539 chr1:161582537 . . 0 19 hm5C_associated_SNPs_3216 0 0 1 0 0 unknown 1 0.500231600101925 1 0.999536799796149 hm5C_site_6404 DeepMRMD:1;iRNA_m5C:0.999536799796149 6405 chr1 161582549 161582549 1 + G A rs74127053 161582530 + 161582510 161582550 41 GTTGGTGGTGTAGTGGTGAGCACAGCTGCCTTTCAAGCAGT GTTGGTGGTGTAGTGGTGAGCACAGCTGCCTTTCAAGCAAT < 41bp 1 0.61535292559516 1 0.451069593429565 experiment 0.769294148809681 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582530 chr1:161582549 . . 0 40 hm5C_associated_SNPs_3217 0 0 1 0 0 unknown 1 0.500231643250657 1 0.999536713498686 hm5C_site_6405 DeepMRMD:1;iRNA_m5C:0.999536713498686 6406 chr1 161582549 161582549 1 + G A rs74127053 161582535 + 161582515 161582555 41 TGGTGTAGTGGTGAGCACAGCTGCCTTTCAAGCAGTTAACG TGGTGTAGTGGTGAGCACAGCTGCCTTTCAAGCAATTAACG < 41bp 1 0.289885625297399 1 0.367526888847351 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582535 chr1:161582549 . . 0 35 hm5C_associated_SNPs_3218 0 0 1 0 0 unknown 1 0.500291234257157 1 0.999417531485686 hm5C_site_6406 DeepMRMD:1;iRNA_m5C:0.999417531485686 6407 chr1 161582549 161582549 1 + G A rs74127053 161582539 + 161582519 161582559 41 GTAGTGGTGAGCACAGCTGCCTTTCAAGCAGTTAACGCGGG GTAGTGGTGAGCACAGCTGCCTTTCAAGCAATTAACGCGGG < 41bp 1 0.0591791268522735 1 0.0549453794956207 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582539 chr1:161582549 . . 0 31 hm5C_associated_SNPs_3219 0 0 1 0 0 unknown 1 0.500231643894875 1 0.999536712210249 hm5C_site_6407 DeepMRMD:1;iRNA_m5C:0.999536712210249 6408 chr1 161582549 161582549 1 + G A rs74127053 161582562 + 161582542 161582582 41 TCAAGCAGTTAACGCGGGTTCGATTCCCGGGTAACGAAACG TCAAGCAATTAACGCGGGTTCGATTCCCGGGTAACGAAACG < 41bp 1 0.149156894920596 1 0.0744539797306061 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582562 chr1:161582549 . . 0 8 hm5C_associated_SNPs_3220 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_6408 DeepMRMD:1;iRNA_m5C:0.999536712157816 6409 chr1 161582549 161582549 1 + G A rs74127053 161582567 + 161582547 161582587 41 CAGTTAACGCGGGTTCGATTCCCGGGTAACGAAACGTTTTT CAATTAACGCGGGTTCGATTCCCGGGTAACGAAACGTTTTT < 41bp 1 0.544157755344331 1 0.627081036567688 experiment 0.911684489311338 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582567 chr1:161582549 . . 0 3 hm5C_associated_SNPs_3221 0 0 1 0 0 unknown 1 0.500231643921087 0.745837926864624 0.999536712157826 hm5C_site_6409 DeepMRMD:0.745837926864624;iRNA_m5C:0.999536712157826 6410 chr1 161582570 161582570 1 + G A rs114193592 161582562 + 161582542 161582582 41 TCAAGCAGTTAACGCGGGTTCGATTCCCGGGTAACGAAACG TCAAGCAGTTAACGCGGGTTCGATTCCCAGGTAACGAAACG < 41bp 1 0.149555020064383 1 0.057656317949295 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582562 chr1:161582570 . . 0 29 hm5C_associated_SNPs_3222 0 0 1 0 0 unknown 1 0.500231351432129 1 0.999537297135741 hm5C_site_6410 DeepMRMD:1;iRNA_m5C:0.999537297135741 6411 chr1 161582570 161582570 1 + G A rs114193592 161582567 + 161582547 161582587 41 CAGTTAACGCGGGTTCGATTCCCGGGTAACGAAACGTTTTT CAGTTAACGCGGGTTCGATTCCCAGGTAACGAAACGTTTTT < 41bp 1 0.302131355252739 1 0.602572321891785 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582567 chr1:161582570 . . 0 24 hm5C_associated_SNPs_3223 0 0 1 0 0 unknown 1 0.500231643868976 0.79485535621643 0.999536712262049 hm5C_site_6411 DeepMRMD:0.79485535621643;iRNA_m5C:0.999536712262049 6412 chr1 161582571 161582571 1 + G A rs114835251 161582562 + 161582542 161582582 41 TCAAGCAGTTAACGCGGGTTCGATTCCCGGGTAACGAAACG TCAAGCAGTTAACGCGGGTTCGATTCCCGAGTAACGAAACG < 41bp 1 0.160042905234812 1 0.0770199298858643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582562 chr1:161582571 . . 0 30 hm5C_associated_SNPs_3224 0 0 1 0 0 unknown 1 0.500231643502357 1 0.999536712995287 hm5C_site_6412 DeepMRMD:1;iRNA_m5C:0.999536712995287 6413 chr1 161582571 161582571 1 + G A rs114835251 161582567 + 161582547 161582587 41 CAGTTAACGCGGGTTCGATTCCCGGGTAACGAAACGTTTTT CAGTTAACGCGGGTTCGATTCCCGAGTAACGAAACGTTTTT < 41bp 1 0.660693372561192 1 0.76154363155365 experiment 0.678613254877616 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582567 chr1:161582571 . . 0 25 hm5C_associated_SNPs_3225 0 0 1 0 0 unknown 1 0.50023164392105 0.4769127368927 0.999536712157899 hm5C_site_6413 DeepMRMD:0.4769127368927;iRNA_m5C:0.999536712157899 6414 chr1 161582572 161582572 1 + G A rs144176068 161582562 + 161582542 161582582 41 TCAAGCAGTTAACGCGGGTTCGATTCCCGGGTAACGAAACG TCAAGCAGTTAACGCGGGTTCGATTCCCGGATAACGAAACG < 41bp 1 0.185717690490263 1 0.137460082769394 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582562 chr1:161582572 . . 0 31 hm5C_associated_SNPs_3226 0 0 1 0 0 unknown 1 0.500231643891088 1 0.999536712217824 hm5C_site_6414 DeepMRMD:1;iRNA_m5C:0.999536712217824 6415 chr1 161582572 161582572 1 + G A rs144176068 161582567 + 161582547 161582587 41 CAGTTAACGCGGGTTCGATTCCCGGGTAACGAAACGTTTTT CAGTTAACGCGGGTTCGATTCCCGGATAACGAAACGTTTTT < 41bp 1 0.466446619740945 1 0.597394108772278 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA7;FCGR3B ENSG00000072694;ENSG00000203747 intronic Human other chr1:161582567 chr1:161582572 . . 0 26 hm5C_associated_SNPs_3227 0 0 1 0 0 unknown 1 0.500231643921062 0.805211782455444 0.999536712157876 hm5C_site_6415 DeepMRMD:0.805211782455444;iRNA_m5C:0.999536712157876 6416 chr1 161753841 161753841 1 + G A rs2271012 161753845 + 161753825 161753865 41 CAAGTTATTCAGTCTCGTCTCCTCGGTCAGTGGACTCTTAT CAAGTTATTCAGTCTCATCTCCTCGGTCAGTGGACTCTTAT < 41bp 1 0.222786115557703 1 0.23856520652771 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161753845 chr1:161753841 synonymous SNV . 0 17 hm5C_associated_SNPs_3229 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643912544 1 0.999536712174912 hm5C_site_6416 DeepMRMD:1;iRNA_m5C:0.999536712174912 6417 chr1 161929235 161929235 1 + T A rs2997506 161929226 + 161929206 161929246 41 ATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGG ATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCACGAGG < 41bp 1 0.696930842726104 1 0.899272441864014 experiment 0.606138314547793 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATF6 ENSG00000118217 UTR3 Human protein_coding chr1:161929226 chr1:161929235 . . 0 30 hm5C_associated_SNPs_3231 0 0 0 0 0 Endoplasmic reticulum 1 0.500231637346918 0.201455116271972 0.999536725306164 hm5C_site_6417 DeepMRMD:0.201455116271972;iRNA_m5C:0.999536725306164 6418 chr1 162493699 162493699 1 + G A rs545024877 162493709 + 162493689 162493729 41 GTGTCCCTGAGTAGAGGATGCTGCTATGCGTGAGTTCATGG GTGTCCCTGAATAGAGGATGCTGCTATGCGTGAGTTCATGG < 41bp 1 0.408422667664175 1 0.0371389389038086 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHMK1 ENSG00000152332 UTR3 Human protein_coding chr1:162493709 chr1:162493699 . . 0 11 hm5C_associated_SNPs_3232 0 0 1 6 0 chromatin 1 0.500231643923131 1 0.999536712153739 hm5C_site_6418 DeepMRMD:1;iRNA_m5C:0.999536712153739 6419 chr1 162495283 162495283 1 + T C rs138731009 162495266 + 162495246 162495286 41 CATTGTACACCCAGAAAAGGCACATACAGTGATTATTTTGT CATTGTACACCCAGAAAAGGCACATACAGTGATTATTCTGT < 41bp 1 0.234864039742692 1 0.0821283161640167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UHMK1 ENSG00000152332 UTR3 Human protein_coding chr1:162495266 chr1:162495283 . . 0 38 hm5C_associated_SNPs_3233 0 0 1 0 0 chromatin 1 0.500231644083205 1 0.99953671183359 hm5C_site_6419 DeepMRMD:1;iRNA_m5C:0.99953671183359 6420 chr1 162725036 162725036 1 + A T rs201573606 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCTCCGA < 41bp 1 0.456970704610126 1 0.655401766300201 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725036 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_3234 0 0 0 0 2 nucleolus 1 0.500231631438738 0.689196467399598 0.999536737122523 hm5C_site_6420 DeepMRMD:0.689196467399598;iRNA_m5C:0.999536737122523 6421 chr1 162725038 162725038 1 + C T rs56313008 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACTGA < 41bp 1 0.42528842677982 1 0.767156004905701 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725038 synonymous SNV . 0 39 hm5C_associated_SNPs_3235 1 0 0 0 2 nucleolus 1 0.49962252931102 0.465687990188598 1 hm5C_site_6421 DeepMRMD:0.465687990188598;iRNA_m5C:1 not specified not specified 6422 chr1 164817996 164817996 1 + G T rs150459354 164818012 + 164817992 164818032 41 CCCTGAGGGGTGAGAATGGGCAGCTAGCAAGAACATGGAAA CCCTTAGGGGTGAGAATGGGCAGCTAGCAAGAACATGGAAA < 41bp 1 0.401113264063816 1 0.132551252841949 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 UTR3 Human protein_coding chr1:164818012 chr1:164817996 . . 0 5 hm5C_associated_SNPs_3236 0 0 0 0 0 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_6422 DeepMRMD:1;iRNA_m5C:0.999536712157818 6423 chr1 167389924 167389924 1 + A C rs564708514 167389934 + 167389914 167389954 41 AAGCCCTGCCAGGGAGAAGTCAGTAGTATTGCTGACTCACT AAGCCCTGCCCGGGAGAAGTCAGTAGTATTGCTGACTCACT < 41bp 1 0.535858011490808 1 0.502802550792694 experiment 0.928283977018384 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POU2F1 ENSG00000143190 UTR3 Human protein_coding chr1:167389934 chr1:167389924 . . 0 11 hm5C_associated_SNPs_3238 0 0 1 0 0 Nucleus 1 0.500231643921257 0.994394898414612 0.999536712157487 hm5C_site_6423 DeepMRMD:0.994394898414612;iRNA_m5C:0.999536712157487 6424 chr1 167389925 167389925 1 + G C rs528639296 167389934 + 167389914 167389954 41 AAGCCCTGCCAGGGAGAAGTCAGTAGTATTGCTGACTCACT AAGCCCTGCCACGGAGAAGTCAGTAGTATTGCTGACTCACT < 41bp 1 0.530830322100162 1 0.389043986797333 experiment 0.938339355799676 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POU2F1 ENSG00000143190 UTR3 Human protein_coding chr1:167389934 chr1:167389925 . . 0 12 hm5C_associated_SNPs_3239 0 0 1 0 0 Nucleus 1 0.50023164392281 1 0.999536712154379 hm5C_site_6424 DeepMRMD:1;iRNA_m5C:0.999536712154379 6425 chr1 167691280 167691280 1 + G C rs573492247 167691273 + 167691253 167691293 41 GGGAGCGCGGCGTGGAGGTGCCACCCGGCGCGGGTGGCGGA GGGAGCGCGGCGTGGAGGTGCCACCCGCCGCGGGTGGCGGA < 41bp 1 0.243809829072754 1 0.147665977478027 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MPZL1 ENSG00000197965 UTR5 Human protein_coding chr1:167691273 chr1:167691280 . . 0 28 hm5C_associated_SNPs_3240 0 0 1 0 0 Ribosome 1 0.500231643919151 1 0.999536712161698 hm5C_site_6425 DeepMRMD:1;iRNA_m5C:0.999536712161698 6426 chr1 167691280 167691280 1 + G C rs573492247 167691276 + 167691256 167691296 41 AGCGCGGCGTGGAGGTGCCACCCGGCGCGGGTGGCGGAGAG AGCGCGGCGTGGAGGTGCCACCCGCCGCGGGTGGCGGAGAG < 41bp 1 0.451638483172622 1 0.477971136569977 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MPZL1 ENSG00000197965 UTR5 Human protein_coding chr1:167691276 chr1:167691280 . . 0 25 hm5C_associated_SNPs_3242 0 0 1 0 0 Ribosome 1 0.50023164425936 1 0.999536711481279 hm5C_site_6426 DeepMRMD:1;iRNA_m5C:0.999536711481279 6427 chr1 167691280 167691280 1 + G C rs573492247 167691277 + 167691257 167691297 41 GCGCGGCGTGGAGGTGCCACCCGGCGCGGGTGGCGGAGAGA GCGCGGCGTGGAGGTGCCACCCGCCGCGGGTGGCGGAGAGA < 41bp 1 0.467198138077128 1 0.517097055912018 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MPZL1 ENSG00000197965 UTR5 Human protein_coding chr1:167691277 chr1:167691280 . . 0 24 hm5C_associated_SNPs_3243 0 0 1 0 0 Ribosome 1 0.500221944360881 0.965805888175964 0.999556111278237 hm5C_site_6427 DeepMRMD:0.965805888175964;iRNA_m5C:0.999556111278237 6428 chr1 167758321 167758321 1 + A C rs183563193 167758336 + 167758316 167758356 41 ATAACAGCTTCATGGTGCCTCAAAGACTGTTGAGGTTAATG ATAACCGCTTCATGGTGCCTCAAAGACTGTTGAGGTTAATG < 41bp 1 0.28285821798867 1 0.443206250667572 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPZL1 ENSG00000197965 UTR3 Human protein_coding chr1:167758336 chr1:167758321 . . 0 6 hm5C_associated_SNPs_3246 0 0 1 0 0 Ribosome 1 0.500230973901583 1 0.999538052196833 hm5C_site_6428 DeepMRMD:1;iRNA_m5C:0.999538052196833 6429 chr1 168014204 168014204 1 + T A rs41271647 168014224 + 168014204 168014244 41 TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT ATGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT < 41bp 1 0.424060306510313 1 0.523734390735626 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168014224 chr1:168014204 nonsynonymous SNV 0.025 0 1 hm5C_associated_SNPs_3247 0 0 1 0 1 Cytosol 1 0.500231643921092 0.952531218528748 0.999536712157815 hm5C_site_6429 DeepMRMD:0.952531218528748;iRNA_m5C:0.999536712157815 6430 chr1 171527223 171527223 1 + C G rs556975367 171527220 + 171527200 171527240 41 ACAGTCACATGGCACTCTGACAGCTGAATTATGGGATAACA ACAGTCACATGGCACTCTGACAGGTGAATTATGGGATAACA < 41bp 1 0.455627359412151 1 0.755457282066345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171527220 chr1:171527223 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_3248 0 0 1 0 1 Cytosol 1 0.50023164392247 0.48908543586731 0.99953671215506 hm5C_site_6430 DeepMRMD:0.48908543586731;iRNA_m5C:0.99953671215506 6431 chr1 171558643 171558643 1 + C A rs116404787 171558656 + 171558636 171558676 41 CATGAGCCATGCTCGTTTGCCACATGTAGCCAGGGGTCCTT CATGAGCAATGCTCGTTTGCCACATGTAGCCAGGGGTCCTT < 41bp 1 0.399868629386618 1 0.181524455547333 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171558656 chr1:171558643 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_3249 0 0 1 0 0 Cytosol 1 0.500231643920839 1 0.999536712158322 hm5C_site_6431 DeepMRMD:1;iRNA_m5C:0.999536712158322 6432 chr1 171763627 171763627 1 + A G rs61733150 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAGTCTTTTCTACAGAAGGTTAAAA < 41bp 1 0.123421760829538 1 0.0714583992958069 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763627 synonymous SNV . 0 19 hm5C_associated_SNPs_3250 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_6432 DeepMRMD:1;iRNA_m5C:0.999536712157815 6433 chr1 172579544 172579544 1 + G A rs189837722 172579557 + 172579537 172579577 41 AAAAGTAGATGGGATTGTGTCAATCTTGGTTAATGAGCTAC AAAAGTAAATGGGATTGTGTCAATCTTGGTTAATGAGCTAC < 41bp 1 0.110553129325265 1 0.177890688180923 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SUCO ENSG00000094975 UTR3 Human protein_coding chr1:172579557 chr1:172579544 . . 0 8 hm5C_associated_SNPs_3251 0 0 1 1 0 Ribosome 1 0.500231625244925 1 0.999536749510149 hm5C_site_6433 DeepMRMD:1;iRNA_m5C:0.999536749510149 6434 chr1 174968807 174968807 1 + A T rs11548913 174968824 + 174968804 174968844 41 CCGACTTGGACTCCGAAGATCGGTACGTTATTTCCGGGGCT CCGTCTTGGACTCCGAAGATCGGTACGTTATTTCCGGGGCT < 41bp 1 0.648705225137372 1 0.71564382314682 experiment 0.702589549725256 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CACYBP ENSG00000116161 UTR5 Human protein_coding chr1:174968824 chr1:174968807 . . 0 4 hm5C_associated_SNPs_3252 0 0 0 0 1 Cytosol 1 0.500231643921652 0.56871235370636 0.999536712156696 hm5C_site_6434 DeepMRMD:0.56871235370636;iRNA_m5C:0.999536712156696 6435 chr1 179042524 179042524 1 + T C rs4652354 179042513 + 179042493 179042533 41 CAGGCTGGAGTGCAGTGGCACGATCTTGGCTTACTGCAACC CAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACTGCAACC < 41bp 1 0.254829209567496 1 0.293291926383972 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FAM20B ENSG00000116199 UTR3 Human protein_coding chr1:179042513 chr1:179042524 . . 0 32 hm5C_associated_SNPs_3256 0 0 0 0 0 Ribosome 1 0.500231643921086 1 0.999536712157827 hm5C_site_6435 DeepMRMD:1;iRNA_m5C:0.999536712157827 6436 chr1 179044200 179044200 1 + G A rs116023119 179044201 + 179044181 179044221 41 ACAGGGCACGGTGGCATGCGCCTGTAGTCCCAGCTACTCGG ACAGGGCACGGTGGCATGCACCTGTAGTCCCAGCTACTCGG < 41bp 1 0.427164995507453 1 0.0564291179180145 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM20B ENSG00000116199 UTR3 Human protein_coding chr1:179044201 chr1:179044200 . . 0 20 hm5C_associated_SNPs_3257 0 0 0 0 0 Ribosome 1 0.500231643984275 1 0.99953671203145 hm5C_site_6436 DeepMRMD:1;iRNA_m5C:0.99953671203145 6437 chr1 179044200 179044200 1 + G A rs116023119 179044209 + 179044189 179044229 41 CGGTGGCATGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGA CGGTGGCATGCACCTGTAGTCCCAGCTACTCGGGAGGCTGA < 41bp 1 0.541710416900179 1 0.50196647644043 experiment 0.916579166199642 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control FAM20B ENSG00000116199 UTR3 Human protein_coding chr1:179044209 chr1:179044200 . . 0 12 hm5C_associated_SNPs_3258 0 0 0 0 0 Ribosome 1 0.500231643920218 0.99606704711914 0.999536712159563 hm5C_site_6437 DeepMRMD:0.99606704711914;iRNA_m5C:0.999536712159563 6438 chr1 179044200 179044200 1 + G A rs116023119 179044210 + 179044190 179044230 41 GGTGGCATGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG GGTGGCATGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAG < 41bp 1 0.46882422552933 1 0.267023384571075 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control FAM20B ENSG00000116199 UTR3 Human protein_coding chr1:179044210 chr1:179044200 . . 0 11 hm5C_associated_SNPs_3259 0 0 0 0 0 Ribosome 1 0.50023163623252 1 0.99953672753496 hm5C_site_6438 DeepMRMD:1;iRNA_m5C:0.99953672753496 6439 chr1 179044200 179044200 1 + G A rs116023119 179044211 + 179044191 179044231 41 GTGGCATGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG GTGGCATGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGG < 41bp 1 0.625554413086754 1 0.730087518692017 experiment 0.748891173826492 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control FAM20B ENSG00000116199 UTR3 Human protein_coding chr1:179044211 chr1:179044200 . . 0 10 hm5C_associated_SNPs_3260 0 0 0 0 0 Ribosome 1 0.500231643921097 0.539824962615966 0.999536712157806 hm5C_site_6439 DeepMRMD:0.539824962615966;iRNA_m5C:0.999536712157806 6440 chr1 179044200 179044200 1 + G A rs116023119 179044214 + 179044194 179044234 41 GCATGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAG GCATGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAG < 41bp 1 0.491291760125619 1 0.100871026515961 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control FAM20B ENSG00000116199 UTR3 Human protein_coding chr1:179044214 chr1:179044200 . . 0 7 hm5C_associated_SNPs_3261 0 0 0 0 0 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_6440 DeepMRMD:1;iRNA_m5C:0.99953671215782 6441 chr1 179064875 179064875 1 + A G rs1046385 179064874 + 179064854 179064894 41 GAGAATACACTCTAGGTTTGCAGGCTGGTGGGCTTTCAAAT GAGAATACACTCTAGGTTTGCGGGCTGGTGGGCTTTCAAAT < 41bp 1 0.685011239712478 1 0.858759820461273 experiment 0.629977520575044 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOR3A ENSG00000186283 UTR3 Human protein_coding chr1:179064874 chr1:179064875 . . 0 22 hm5C_associated_SNPs_3262 0 0 1 0 0 Ribosome 1 0.500231643921309 0.282480359077454 0.999536712157381 hm5C_site_6441 DeepMRMD:0.282480359077454;iRNA_m5C:0.999536712157381 6442 chr1 179064882 179064882 1 + T G rs562523296 179064874 + 179064854 179064894 41 GAGAATACACTCTAGGTTTGCAGGCTGGTGGGCTTTCAAAT GAGAATACACTCTAGGTTTGCAGGCTGGGGGGCTTTCAAAT < 41bp 1 0.674011897128281 1 0.726349592208862 experiment 0.651976205743438 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOR3A ENSG00000186283 UTR3 Human protein_coding chr1:179064874 chr1:179064882 . . 0 29 hm5C_associated_SNPs_3263 0 0 1 0 0 Ribosome 1 0.500231643925605 0.547300815582276 0.999536712148789 hm5C_site_6442 DeepMRMD:0.547300815582276;iRNA_m5C:0.999536712148789 6443 chr1 179323919 179323919 1 + A G rs4652366 179323917 + 179323897 179323937 41 ACTTCCATTTTATAAGATGCCCATTTCTAATACAATGTGTG ACTTCCATTTTATAAGATGCCCGTTTCTAATACAATGTGTG < 41bp 1 0.0340494215980903 1 0.039831131696701 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOAT1 ENSG00000057252 UTR3 Human protein_coding chr1:179323917 chr1:179323919 . . 0 23 hm5C_associated_SNPs_3265 0 0 1 0 0 Ribosome 1 0.500231643464938 1 0.999536713070124 hm5C_site_6443 DeepMRMD:1;iRNA_m5C:0.999536713070124 6444 chr1 179323919 179323919 1 + A G rs4652366 179323918 + 179323898 179323938 41 CTTCCATTTTATAAGATGCCCATTTCTAATACAATGTGTGT CTTCCATTTTATAAGATGCCCGTTTCTAATACAATGTGTGT < 41bp 1 0.0291035760913909 1 0.0262992978096008 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOAT1 ENSG00000057252 UTR3 Human protein_coding chr1:179323918 chr1:179323919 . . 0 22 hm5C_associated_SNPs_3266 0 0 1 0 0 Ribosome 1 0.500231644331333 1 0.999536711337334 hm5C_site_6444 DeepMRMD:1;iRNA_m5C:0.999536711337334 6445 chr1 180049723 180049723 1 + A T rs149251843 180049727 + 180049707 180049747 41 ATAGGACTGGAGGACAATGTCACCTGCCTATCAAGTCCCAT ATAGGACTGGAGGACATTGTCACCTGCCTATCAAGTCCCAT < 41bp 1 0.457992173802584 1 0.247633516788483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180049727 chr1:180049723 nonsynonymous SNV 0.285 0 17 hm5C_associated_SNPs_3268 0 0 1 0 2 Nucleus 1 0.500231643925426 1 0.999536712149147 hm5C_site_6445 DeepMRMD:1;iRNA_m5C:0.999536712149147 6446 chr1 180165699 180165699 1 + A C rs3738115 180165711 + 180165691 180165731 41 CCCCCACAAACACCACCCCACATGTGCCGGCTGAGGGACCT CCCCCACACACACCACCCCACATGTGCCGGCTGAGGGACCT < 41bp 1 0.236755265994949 1 0.0185408294200897 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180165711 chr1:180165699 nonsynonymous SNV 0.001 0 9 hm5C_associated_SNPs_3270 0 0 1 0 0 Ribosome 1 0.50023164194565 1 0.9995367161087 hm5C_site_6446 DeepMRMD:1;iRNA_m5C:0.9995367161087 6447 chr1 180165718 180165718 1 + C T rs145708234 180165711 + 180165691 180165731 41 CCCCCACAAACACCACCCCACATGTGCCGGCTGAGGGACCT CCCCCACAAACACCACCCCACATGTGCTGGCTGAGGGACCT < 41bp 1 0.217556254647765 1 0.0502126812934875 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180165711 chr1:180165718 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_3271 0 0 1 0 0 Ribosome 1 0.500231618751817 1 0.999536762496366 hm5C_site_6447 DeepMRMD:1;iRNA_m5C:0.999536762496366 6448 chr1 180166631 180166631 1 + G A rs4652482 180166624 + 180166604 180166644 41 GGGGCTCCGCCCACCCTGCTCCCTTCCGGACAATGAAGAAG GGGGCTCCGCCCACCCTGCTCCCTTCCAGACAATGAAGAAG < 41bp 1 0.079254216044148 1 0.114455342292786 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QSOX1 ENSG00000116260 UTR3 Human protein_coding chr1:180166624 chr1:180166631 . . 0 28 hm5C_associated_SNPs_3272 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6448 DeepMRMD:1;iRNA_m5C:0.999536712157815 6449 chr1 180166631 180166631 1 + G A rs4652482 180166625 + 180166605 180166645 41 GGGCTCCGCCCACCCTGCTCCCTTCCGGACAATGAAGAAGC GGGCTCCGCCCACCCTGCTCCCTTCCAGACAATGAAGAAGC < 41bp 1 0.0227191036085134 1 0.216059535741806 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QSOX1 ENSG00000116260 UTR3 Human protein_coding chr1:180166625 chr1:180166631 . . 0 27 hm5C_associated_SNPs_3273 0 0 1 0 0 Ribosome 1 0.500231610262019 1 0.999536779475962 hm5C_site_6449 DeepMRMD:1;iRNA_m5C:0.999536779475962 6450 chr1 180794046 180794046 1 + G A rs151270778 180794028 + 180794008 180794048 41 GCTGGAGTAAACCATGTACTCATCTTTGAACTTAATCCGAG GCTGGAGTAAACCATGTACTCATCTTTGAACTTAATCCAAG < 41bp 1 0.347577722000544 1 0.481764554977417 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control XPR1 ENSG00000143324 CDS Human protein_coding chr1:180794028 chr1:180794046 synonymous SNV . 0 39 hm5C_associated_SNPs_3274 0 0 1 0 1 Ribosome 1 0.500231640312061 1 0.999536719375878 hm5C_site_6450 DeepMRMD:1;iRNA_m5C:0.999536719375878 6451 chr1 180856179 180856179 1 + A G rs149072506 180856192 + 180856172 180856212 41 GTGGCGCATGCCTGTAATCCCAGCTACTCAGGAGACTGAGG GTGGCGCGTGCCTGTAATCCCAGCTACTCAGGAGACTGAGG < 41bp 1 0.460489590870183 1 0.7514808177948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XPR1 ENSG00000143324 UTR3 Human protein_coding chr1:180856192 chr1:180856179 . . 0 8 hm5C_associated_SNPs_3275 0 0 0 0 0 Ribosome 1 0.500231643921092 0.4970383644104 0.999536712157815 hm5C_site_6451 DeepMRMD:0.4970383644104;iRNA_m5C:0.999536712157815 6452 chr1 180856179 180856179 1 + A G rs149072506 180856195 + 180856175 180856215 41 GCGCATGCCTGTAATCCCAGCTACTCAGGAGACTGAGGCAG GCGCGTGCCTGTAATCCCAGCTACTCAGGAGACTGAGGCAG < 41bp 1 0.239772021857778 1 0.0834195017814636 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XPR1 ENSG00000143324 UTR3 Human protein_coding chr1:180856195 chr1:180856179 . . 0 5 hm5C_associated_SNPs_3276 0 0 0 0 0 Ribosome 1 0.500253435214402 1 0.999493129571196 hm5C_site_6452 DeepMRMD:1;iRNA_m5C:0.999493129571196 6453 chr1 180856179 180856179 1 + A G rs149072506 180856198 + 180856178 180856218 41 CATGCCTGTAATCCCAGCTACTCAGGAGACTGAGGCAGGAG CGTGCCTGTAATCCCAGCTACTCAGGAGACTGAGGCAGGAG < 41bp 1 0.575204118403174 1 0.136378467082977 experiment 0.849591763193652 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XPR1 ENSG00000143324 UTR3 Human protein_coding chr1:180856198 chr1:180856179 . . 0 2 hm5C_associated_SNPs_3277 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6453 DeepMRMD:1;iRNA_m5C:0.999536712157815 6454 chr1 181025370 181025370 1 + C A rs144235017 181025360 + 181025340 181025380 41 AATACAAAAAATTAGCTGGGCATGGTGTTGCGTGCCTGTAG AATACAAAAAATTAGCTGGGCATGGTGTTGAGTGCCTGTAG < 41bp 1 0.488050744651226 1 0.407748013734818 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MR1 ENSG00000153029 UTR3 Human protein_coding chr1:181025360 chr1:181025370 . . 0 31 hm5C_associated_SNPs_3278 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921274 1 0.999536712157453 hm5C_site_6454 DeepMRMD:1;iRNA_m5C:0.999536712157453 6455 chr1 181058643 181058643 1 + A C rs1361365 181058642 + 181058622 181058662 41 CTGCCTGCTGCTGCGCGCCGCAACCAGCGGAGGACGAGCCC CTGCCTGCTGCTGCGCGCCGCCACCAGCGGAGGACGAGCCC < 41bp 1 0.159156540758353 1 0.132958352565765 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IER5 ENSG00000162783 CDS Human protein_coding chr1:181058642 chr1:181058643 nonsynonymous SNV 0.139 1 22 hm5C_associated_SNPs_3279 0 0 1 0 0 chromatin 1 0.500231643922815 1 0.999536712154369 hm5C_site_6455 DeepMRMD:1;iRNA_m5C:0.999536712154369 6456 chr1 181059835 181059835 1 + A G rs78185242 181059844 + 181059824 181059864 41 GTTTTGTAGATATGGTGACTCCAGTCTTTGTTGTATAAAGG GTTTTGTAGATGTGGTGACTCCAGTCTTTGTTGTATAAAGG < 41bp 1 0.17430966330818 1 0.578845858573914 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IER5 ENSG00000162783 UTR3 Human protein_coding chr1:181059844 chr1:181059835 . . 0 12 hm5C_associated_SNPs_3282 0 0 1 1 0 chromatin 1 0.500226258031239 0.842308282852172 0.999547483937521 hm5C_site_6456 DeepMRMD:0.842308282852172;iRNA_m5C:0.999547483937521 6457 chr1 181059835 181059835 1 + A G rs78185242 181059845 + 181059825 181059865 41 TTTTGTAGATATGGTGACTCCAGTCTTTGTTGTATAAAGGT TTTTGTAGATGTGGTGACTCCAGTCTTTGTTGTATAAAGGT < 41bp 1 0.161720817059368 1 0.447928428649902 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IER5 ENSG00000162783 UTR3 Human protein_coding chr1:181059845 chr1:181059835 . . 0 11 hm5C_associated_SNPs_3283 0 0 1 1 0 chromatin 1 0.500231643948131 1 0.999536712103739 hm5C_site_6457 DeepMRMD:1;iRNA_m5C:0.999536712103739 6458 chr1 183083724 183083724 1 + C T rs201041731 183083740 + 183083720 183083760 41 GTTCCACTGGCCATGGGGGCCACTGTACCAACTGCCAGGAT GTTCTACTGGCCATGGGGGCCACTGTACCAACTGCCAGGAT < 41bp 1 0.264125711921677 1 0.124532371759415 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183083740 chr1:183083724 synonymous SNV . 0 5 hm5C_associated_SNPs_3284 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6458 DeepMRMD:1;iRNA_m5C:0.999536712157815 6459 chr1 183086559 183086559 1 + C G rs150392886 183086575 + 183086555 183086595 41 TCCTCGGTACTTCATTGCTCCTGGTAAGTAAGGCTAGAAAG TCCTGGGTACTTCATTGCTCCTGGTAAGTAAGGCTAGAAAG < 41bp 1 0.368674174186047 1 0.140183627605438 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086575 chr1:183086559 nonsynonymous SNV 0.991 2 5 hm5C_associated_SNPs_3287 0 0 1 0 1 Ribosome 1 0.500231643922867 1 0.999536712154266 hm5C_site_6459 DeepMRMD:1;iRNA_m5C:0.999536712154266 6460 chr1 183101625 183101625 1 + G A rs12095652 183101623 + 183101603 183101643 41 ACAACCTGCTTCTGAGGACACTGGCAGGAGAAAATCAAACA ACAACCTGCTTCTGAGGACACTAGCAGGAGAAAATCAAACA < 41bp 1 0.191336958026183 1 0.198517382144928 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101623 chr1:183101625 synonymous SNV . 0 23 hm5C_associated_SNPs_3288 0 0 1 0 2 Ribosome 1 0.500231644216499 1 0.999536711567003 hm5C_site_6460 DeepMRMD:1;iRNA_m5C:0.999536711567003 6461 chr1 183101625 183101625 1 + G A rs12095652 183101645 + 183101625 183101665 41 GGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGCTTA AGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGCTTA < 41bp 1 0.0236369533650889 1 0.0929311513900757 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101645 chr1:183101625 synonymous SNV . 0 1 hm5C_associated_SNPs_3290 0 0 1 0 2 Ribosome 1 0.500231643911798 1 0.999536712176404 hm5C_site_6461 DeepMRMD:1;iRNA_m5C:0.999536712176404 6462 chr1 183896115 183896115 1 + A G rs143573313 183896120 + 183896100 183896140 41 CAGGAGGAGCTTCGGAGGACCATCGCCCCACTGGTCTAGCC CAGGAGGAGCTTCGGGGGACCATCGCCCCACTGGTCTAGCC < 41bp 1 0.316776453873247 1 0.179399609565735 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RGL1 ENSG00000143344 UTR3 Human protein_coding chr1:183896120 chr1:183896115 . . 0 16 hm5C_associated_SNPs_3291 0 0 0 0 0 cytosol 1 0.500231643593349 1 0.999536712813302 hm5C_site_6462 DeepMRMD:1;iRNA_m5C:0.999536712813302 6463 chr1 186946869 186946869 1 + A G rs28395831 186946875 + 186946855 186946895 41 AAGATTGCCCAACCATCATCCACTTTGTTCTGGCCAACATC AAGATTGCCCAACCGTCATCCACTTTGTTCTGGCCAACATC < 41bp 1 0.172398635958334 1 0.254623800516129 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186946875 chr1:186946869 nonsynonymous SNV 0.985 0 15 hm5C_associated_SNPs_3292 0 0 0 0 1 Nucleus 1 0.500231643921071 1 0.999536712157857 hm5C_site_6463 DeepMRMD:1;iRNA_m5C:0.999536712157857 6464 chr1 192778199 192778199 1 + A G rs143288784 192778185 + 192778165 192778205 41 AGCCGCAAACAGCCGGGGCTCCAGCGGGAGAACGATAATGC AGCCGCAAACAGCCGGGGCTCCAGCGGGAGAACGGTAATGC < 41bp 1 0.478887527030664 1 0.496075958013535 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RGS2 ENSG00000116741 UTR5 Human protein_coding chr1:192778185 chr1:192778199 . . 0 35 hm5C_associated_SNPs_3293 0 0 1 0 0 Nucleus 1 0.500231643921091 1 0.999536712157819 hm5C_site_6464 DeepMRMD:1;iRNA_m5C:0.999536712157819 6465 chr1 193059034 193059034 1 + C G rs145562827 193059043 + 193059023 193059063 41 TTTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAG TTTCCCAGGTTGAAGCAATTCTCCTGCCTCAGCCTCCCAAG < 41bp 1 0.66435407196803 1 0.203073531389236 experiment 0.67129185606394 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TROVE2 ENSG00000116747 UTR3 Human protein_coding chr1:193059043 chr1:193059034 . . 0 12 hm5C_associated_SNPs_3294 0 0 0 0 0 Ribosome 1 0.500231810489958 1 0.999536379020085 hm5C_site_6465 DeepMRMD:1;iRNA_m5C:0.999536379020085 6466 chr1 193059034 193059034 1 + C G rs145562827 193059045 + 193059025 193059065 41 TCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTA TCCCAGGTTGAAGCAATTCTCCTGCCTCAGCCTCCCAAGTA < 41bp 1 0.207387843796039 1 0.170963287353516 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TROVE2 ENSG00000116747 UTR3 Human protein_coding chr1:193059045 chr1:193059034 . . 0 10 hm5C_associated_SNPs_3295 0 0 0 0 0 Ribosome 1 0.500231644332763 1 0.999536711334473 hm5C_site_6466 DeepMRMD:1;iRNA_m5C:0.999536711334473 6467 chr1 193059034 193059034 1 + C G rs145562827 193059046 + 193059026 193059066 41 CCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAG CCCAGGTTGAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAG < 41bp 1 0.397700728848276 1 0.0732695460319519 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TROVE2 ENSG00000116747 UTR3 Human protein_coding chr1:193059046 chr1:193059034 . . 0 9 hm5C_associated_SNPs_3296 0 0 0 0 0 Ribosome 1 0.500231643920891 1 0.999536712158218 hm5C_site_6467 DeepMRMD:1;iRNA_m5C:0.999536712158218 6468 chr1 193059034 193059034 1 + C G rs145562827 193059049 + 193059029 193059069 41 AGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTG AGGTTGAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTG < 41bp 1 0.13382263616297 1 0.0435175597667694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TROVE2 ENSG00000116747 UTR3 Human protein_coding chr1:193059049 chr1:193059034 . . 0 6 hm5C_associated_SNPs_3297 0 0 0 0 0 Ribosome 1 0.50023164392135 1 0.999536712157299 hm5C_site_6468 DeepMRMD:1;iRNA_m5C:0.999536712157299 6469 chr1 193059034 193059034 1 + C G rs145562827 193059050 + 193059030 193059070 41 GGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGG GGTTGAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGG < 41bp 1 0.43312623785877 1 0.298341780900955 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TROVE2 ENSG00000116747 UTR3 Human protein_coding chr1:193059050 chr1:193059034 . . 0 5 hm5C_associated_SNPs_3298 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6469 DeepMRMD:1;iRNA_m5C:0.999536712157815 6470 chr1 193059034 193059034 1 + C G rs145562827 193059052 + 193059032 193059072 41 TTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGA TTGAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGA < 41bp 1 0.276475145719696 1 0.553956806659698 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TROVE2 ENSG00000116747 UTR3 Human protein_coding chr1:193059052 chr1:193059034 . . 0 3 hm5C_associated_SNPs_3299 0 0 0 0 0 Ribosome 1 0.500231643921092 0.892086386680604 0.999536712157815 hm5C_site_6470 DeepMRMD:0.892086386680604;iRNA_m5C:0.999536712157815 6471 chr1 198288709 198288709 1 + A G rs6679100 198288708 + 198288688 198288728 41 TGAAAGTATTTTGTGCAAGTCATACCTCCCCATTTATGTCT TGAAAGTATTTTGTGCAAGTCGTACCTCCCCATTTATGTCT < 41bp 1 0.0874653920381939 1 0.0217593610286713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEK7 ENSG00000151414 UTR3 Human protein_coding chr1:198288708 chr1:198288709 . . 0 22 hm5C_associated_SNPs_3300 0 0 1 1 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6471 DeepMRMD:1;iRNA_m5C:0.999536712157815 6472 chr1 200817238 200817238 1 + A G rs139956440 200817245 + 200817225 200817265 41 CTCCAAACCGAGGAATCACTCGTTCTATTAGTAATGAAGGA CTCCAAACCGAGGGATCACTCGTTCTATTAGTAATGAAGGA < 41bp 1 0.102019198406127 1 0.498439699411392 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200817245 chr1:200817238 synonymous SNV . 0 14 hm5C_associated_SNPs_3301 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_6472 DeepMRMD:1;iRNA_m5C:0.999536712157815 6473 chr1 200817239 200817239 1 + A C rs553031275 200817245 + 200817225 200817265 41 CTCCAAACCGAGGAATCACTCGTTCTATTAGTAATGAAGGA CTCCAAACCGAGGACTCACTCGTTCTATTAGTAATGAAGGA < 41bp 1 0.0826186718845279 1 0.692994594573975 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200817245 chr1:200817239 nonsynonymous SNV 1.000 0 15 hm5C_associated_SNPs_3302 0 0 1 0 1 chromatin 1 0.500231643984051 0.61401081085205 0.999536712031898 hm5C_site_6473 DeepMRMD:0.61401081085205;iRNA_m5C:0.999536712031898 6474 chr1 200817258 200817258 1 + A C rs147174162 200817245 + 200817225 200817265 41 CTCCAAACCGAGGAATCACTCGTTCTATTAGTAATGAAGGA CTCCAAACCGAGGAATCACTCGTTCTATTAGTACTGAAGGA < 41bp 1 0.0965607712302262 1 0.578476071357727 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200817245 chr1:200817258 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_3303 0 0 1 0 1 chromatin 1 0.500231643929083 0.843047857284546 0.999536712141834 hm5C_site_6474 DeepMRMD:0.843047857284546;iRNA_m5C:0.999536712141834 6475 chr1 200883002 200883002 1 + G C rs556843527 200882997 + 200882977 200883017 41 TTTATCCCCCAGAGTTTGGCCTACTGGACTTAAGGCCTTGC TTTATCCCCCAGAGTTTGGCCTACTCGACTTAAGGCCTTGC < 41bp 1 0.0949923873630229 1 0.116323530673981 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C1orf106 ENSG00000163362 UTR3 Human protein_coding chr1:200882997 chr1:200883002 . . 0 26 hm5C_associated_SNPs_3304 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6475 DeepMRMD:1;iRNA_m5C:0.999536712157815 6476 chr1 201185637 201185637 1 + C A rs141101331 201185656 + 201185636 201185676 41 GCGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC GAGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC < 41bp 1 0.0268275575181187 1 0.282864809036255 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185656 chr1:201185637 synonymous SNV . 0 2 hm5C_associated_SNPs_3305 0 0 0 0 1 exosome 1 0.500231643979028 1 0.999536712041943 hm5C_site_6476 DeepMRMD:1;iRNA_m5C:0.999536712041943 6477 chr1 201185637 201185637 1 + C A rs141101331 201185657 + 201185637 201185677 41 CGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC AGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC < 41bp 1 0.204877868563693 1 0.458237260580063 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185657 chr1:201185637 synonymous SNV . 0 1 hm5C_associated_SNPs_3306 0 0 0 0 1 exosome 1 0.500230748445079 1 0.999538503109841 hm5C_site_6477 DeepMRMD:1;iRNA_m5C:0.999538503109841 6478 chr1 201185638 201185638 1 + G A rs574892301 201185656 + 201185636 201185676 41 GCGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC GCATCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC < 41bp 1 0.0302375680903798 1 0.308398008346558 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185656 chr1:201185638 nonsynonymous SNV 0.738 1 3 hm5C_associated_SNPs_3307 0 0 0 0 1 exosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_6478 DeepMRMD:1;iRNA_m5C:0.999536712157818 6479 chr1 201185638 201185638 1 + G A rs574892301 201185657 + 201185637 201185677 41 CGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC CATCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC < 41bp 1 0.172795997219557 1 0.497459322214127 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185657 chr1:201185638 nonsynonymous SNV 0.738 1 2 hm5C_associated_SNPs_3308 0 0 0 0 1 exosome 1 0.500218734078596 1 0.999562531842809 hm5C_site_6479 DeepMRMD:1;iRNA_m5C:0.999562531842809 6480 chr1 201185638 201185638 1 + G A rs574892301 201185658 + 201185638 201185678 41 GTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCG ATCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCG < 41bp 1 0.280167474125516 1 0.460389673709869 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185658 chr1:201185638 nonsynonymous SNV 0.738 1 1 hm5C_associated_SNPs_3309 0 0 0 0 1 exosome 1 0.50023164416033 1 0.999536711679341 hm5C_site_6480 DeepMRMD:1;iRNA_m5C:0.999536711679341 6481 chr1 201185647 201185647 1 + C T rs140418667 201185656 + 201185636 201185676 41 GCGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC GCGTCTGCCTCTGCTGGCGGCCCCCAAGGGACAATGGGGGC < 41bp 1 0.0267764977991998 1 0.349783480167389 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185656 chr1:201185647 nonsynonymous SNV 0.593 1 12 hm5C_associated_SNPs_3310 0 0 0 0 1 exosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_6481 DeepMRMD:1;iRNA_m5C:0.99953671215781 6482 chr1 201185647 201185647 1 + C T rs140418667 201185657 + 201185637 201185677 41 CGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC CGTCTGCCTCTGCTGGCGGCCCCCAAGGGACAATGGGGGCC < 41bp 1 0.198378082960885 1 0.572288870811462 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185657 chr1:201185647 nonsynonymous SNV 0.593 1 11 hm5C_associated_SNPs_3311 0 0 0 0 1 exosome 1 0.500231643919227 0.855422258377076 0.999536712161545 hm5C_site_6482 DeepMRMD:0.855422258377076;iRNA_m5C:0.999536712161545 6483 chr1 201185647 201185647 1 + C T rs140418667 201185658 + 201185638 201185678 41 GTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCG GTCTGCCTCTGCTGGCGGCCCCCAAGGGACAATGGGGGCCG < 41bp 1 0.296623508410642 1 0.502844452857971 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185658 chr1:201185647 nonsynonymous SNV 0.593 1 10 hm5C_associated_SNPs_3312 0 0 0 0 1 exosome 1 0.500231643921258 0.994311094284058 0.999536712157485 hm5C_site_6483 DeepMRMD:0.994311094284058;iRNA_m5C:0.999536712157485 6484 chr1 201185647 201185647 1 + C T rs140418667 201185659 + 201185639 201185679 41 TCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGG TCTGCCTCTGCTGGCGGCCCCCAAGGGACAATGGGGGCCGG < 41bp 1 0.136690562041497 1 0.786568760871887 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185659 chr1:201185647 nonsynonymous SNV 0.593 1 9 hm5C_associated_SNPs_3313 0 0 0 0 1 exosome 1 0.500231643921092 0.426862478256226 0.999536712157815 hm5C_site_6484 DeepMRMD:0.426862478256226;iRNA_m5C:0.999536712157815 6485 chr1 201185647 201185647 1 + C T rs140418667 201185660 + 201185640 201185680 41 CTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGGA CTGCCTCTGCTGGCGGCCCCCAAGGGACAATGGGGGCCGGA < 41bp 1 0.511320210257201 1 0.888927936553955 experiment 0.977359579485598 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185660 chr1:201185647 nonsynonymous SNV 0.593 1 8 hm5C_associated_SNPs_3314 0 0 0 0 1 exosome 1 0.500231643921085 0.22214412689209 0.999536712157829 hm5C_site_6485 DeepMRMD:0.22214412689209;iRNA_m5C:0.999536712157829 6486 chr1 201185660 201185660 1 + C A rs563943429 201185656 + 201185636 201185676 41 GCGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC GCGTCTGCCTCCGCTGGCGGCCCCAAAGGGACAATGGGGGC < 41bp 1 0.156741836867374 1 0.51445060968399 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185656 chr1:201185660 nonsynonymous SNV 0.309 5 25 hm5C_associated_SNPs_3315 0 0 0 0 1 exosome 1 0.50023143113888 0.97109878063202 0.999537137722239 hm5C_site_6486 DeepMRMD:0.97109878063202;iRNA_m5C:0.999537137722239 6487 chr1 201185660 201185660 1 + C A rs563943429 201185657 + 201185637 201185677 41 CGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC CGTCTGCCTCCGCTGGCGGCCCCAAAGGGACAATGGGGGCC < 41bp 1 0.144827088963804 1 0.470377415418625 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185657 chr1:201185660 nonsynonymous SNV 0.309 5 24 hm5C_associated_SNPs_3316 0 0 0 0 1 exosome 1 0.500231643519252 1 0.999536712961495 hm5C_site_6487 DeepMRMD:1;iRNA_m5C:0.999536712961495 6488 chr1 201185660 201185660 1 + C A rs563943429 201185658 + 201185638 201185678 41 GTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCG GTCTGCCTCCGCTGGCGGCCCCAAAGGGACAATGGGGGCCG < 41bp 1 0.231064146611277 1 0.461287945508957 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185658 chr1:201185660 nonsynonymous SNV 0.309 5 23 hm5C_associated_SNPs_3317 0 0 0 0 1 exosome 1 0.500231334603283 1 0.999537330793434 hm5C_site_6488 DeepMRMD:1;iRNA_m5C:0.999537330793434 6489 chr1 201185660 201185660 1 + C A rs563943429 201185659 + 201185639 201185679 41 TCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGG TCTGCCTCCGCTGGCGGCCCCAAAGGGACAATGGGGGCCGG < 41bp 1 0.306574604397772 1 0.803586900234222 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185659 chr1:201185660 nonsynonymous SNV 0.309 5 22 hm5C_associated_SNPs_3318 0 0 0 0 1 exosome 1 0.500231643921228 0.392826199531556 0.999536712157544 hm5C_site_6489 DeepMRMD:0.392826199531556;iRNA_m5C:0.999536712157544 6490 chr1 201185660 201185660 1 + C A rs563943429 201185676 + 201185656 201185696 41 CCCCCAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGT CCCCAAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGT < 41bp 1 0.386778887829429 1 0.161520719528198 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185676 chr1:201185660 nonsynonymous SNV 0.309 5 5 hm5C_associated_SNPs_3319 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6490 DeepMRMD:1;iRNA_m5C:0.999536712157815 6491 chr1 201185660 201185660 1 + C A rs563943429 201185677 + 201185657 201185697 41 CCCCAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGTG CCCAAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGTG < 41bp 1 0.135558277973384 1 0.149978637695312 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185677 chr1:201185660 nonsynonymous SNV 0.309 5 4 hm5C_associated_SNPs_3320 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6491 DeepMRMD:1;iRNA_m5C:0.999536712157815 6492 chr1 201790826 201790826 1 + T C rs1032524 201790842 + 201790822 201790862 41 GATGTACAATACATTGGGGGCAGAAGATCTGGGATCAATTA GATGCACAATACATTGGGGGCAGAAGATCTGGGATCAATTA < 41bp 1 0.190991945172056 1 0.395996600389481 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IPO9-AS1 ENSG00000231871 ncRNA_intronic Human antisense chr1:201790842 chr1:201790826 . . 0 5 hm5C_associated_SNPs_3321 0 0 1 0 0 unknown 1 0.500231643926423 1 0.999536712147155 hm5C_site_6492 DeepMRMD:1;iRNA_m5C:0.999536712147155 6493 chr1 201790858 201790858 1 + A G rs540838074 201790842 + 201790822 201790862 41 GATGTACAATACATTGGGGGCAGAAGATCTGGGATCAATTA GATGTACAATACATTGGGGGCAGAAGATCTGGGATCGATTA < 41bp 1 0.189200545127095 1 0.411708474159241 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IPO9-AS1 ENSG00000231871 ncRNA_intronic Human antisense chr1:201790842 chr1:201790858 . . 0 37 hm5C_associated_SNPs_3322 0 0 0 0 0 unknown 1 0.500231643921095 1 0.999536712157811 hm5C_site_6493 DeepMRMD:1;iRNA_m5C:0.999536712157811 6494 chr1 201966486 201966486 1 + A C rs139712457 201966479 + 201966459 201966499 41 CTTCATGCCACCGTCCTTTCCATTTGGAGGAATGGAGAACC CTTCATGCCACCGTCCTTTCCATTTGGCGGAATGGAGAACC < 41bp 1 0.173999518891273 1 0.184468179941177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966479 chr1:201966486 synonymous SNV . 0 28 hm5C_associated_SNPs_3323 0 0 1 0 1 Ribosome 1 0.500231643913359 1 0.999536712173282 hm5C_site_6494 DeepMRMD:1;iRNA_m5C:0.999536712173282 6495 chr1 201966541 201966541 1 + C T rs79980228 201966545 + 201966525 201966565 41 CCTGCTAGCTGGGGACCGCTCCTTGGCAGATGTCATCATCC CCTGCTAGCTGGGGACTGCTCCTTGGCAGATGTCATCATCC < 41bp 1 0.211261396007432 1 0.179242759943008 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966545 chr1:201966541 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_3324 0 0 1 0 1 Ribosome 1 0.500231384145833 1 0.999537231708334 hm5C_site_6495 DeepMRMD:1;iRNA_m5C:0.999537231708334 6496 chr1 201979801 201979801 1 + G A rs141892415 201979804 + 201979784 201979824 41 TTTCTCTCCCGCCTGCCGGCCTGCCTGCCACAGCCGGACTC TTTCTCTCCCGCCTGCCAGCCTGCCTGCCACAGCCGGACTC < 41bp 1 0.391410077131717 1 0.228085339069366 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ELF3 ENSG00000163435 UTR5 Human protein_coding chr1:201979804 chr1:201979801 . . 0 18 hm5C_associated_SNPs_3325 0 0 0 0 1 Endoplasmic reticulum 1 0.500231639827761 1 0.999536720344478 hm5C_site_6496 DeepMRMD:1;iRNA_m5C:0.999536720344478 6497 chr1 201981862 201981862 1 + T A rs2819362 201981858 + 201981838 201981878 41 CTGTGGCGCAGGAGCCCCCTCCCCTGGCAGCTCTGACGTCT CTGTGGCGCAGGAGCCCCCTCCCCAGGCAGCTCTGACGTCT < 41bp 1 0.684866890622559 1 0.772916853427887 experiment 0.630266218754882 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ELF3 ENSG00000163435 CDS Human protein_coding chr1:201981858 chr1:201981862 synonymous SNV . 0 25 hm5C_associated_SNPs_3326 0 0 0 0 2 Endoplasmic reticulum 1 0.500228551384271 0.454166293144226 0.999542897231458 hm5C_site_6497 DeepMRMD:0.454166293144226;iRNA_m5C:0.999542897231458 6498 chr1 201985659 201985659 1 + A C rs543591690 201985664 + 201985644 201985684 41 AAAGGAAAAAAAAAAAAAAACAAAACAAAATGGAGATGAGT AAAGGAAAAAAAAAACAAAACAAAACAAAATGGAGATGAGT < 41bp 1 0.450894420418632 1 0.541770040988922 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control ELF3 ENSG00000163435 UTR3 Human protein_coding chr1:201985664 chr1:201985659 . . 0 16 hm5C_associated_SNPs_3327 0 0 0 1 0 Endoplasmic reticulum 1 0.500232211957643 0.916459918022156 0.999535576084714 hm5C_site_6498 DeepMRMD:0.916459918022156;iRNA_m5C:0.999535576084714 6499 chr1 203097929 203097929 1 + C T rs149147396 203097945 + 203097925 203097965 41 TGCCCCTTGGTGCCCGTCTGCTGATGTGCCCAGCCTGTGCC TGCCTCTTGGTGCCCGTCTGCTGATGTGCCCAGCCTGTGCC < 41bp 1 0.636887392271056 1 0.427301913499832 experiment 0.726225215457889 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADORA1 ENSG00000163485 UTR5 Human protein_coding chr1:203097945 chr1:203097929 . . 0 5 hm5C_associated_SNPs_3329 0 0 0 0 1 exosome 1 0.500231643873276 1 0.999536712253448 hm5C_site_6499 DeepMRMD:1;iRNA_m5C:0.999536712253448 6500 chr1 203097932 203097932 1 + T G rs201792430 203097945 + 203097925 203097965 41 TGCCCCTTGGTGCCCGTCTGCTGATGTGCCCAGCCTGTGCC TGCCCCTGGGTGCCCGTCTGCTGATGTGCCCAGCCTGTGCC < 41bp 1 0.666818941005724 1 0.281493902206421 experiment 0.666362117988553 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADORA1 ENSG00000163485 UTR5 Human protein_coding chr1:203097945 chr1:203097932 . . 0 8 hm5C_associated_SNPs_3330 0 0 0 0 1 exosome 1 0.500231643897331 1 0.999536712205338 hm5C_site_6500 DeepMRMD:1;iRNA_m5C:0.999536712205338 6501 chr1 203787700 203787700 1 + T A rs4951260 203787706 + 203787686 203787726 41 ATTTGTTTACAGGGTGACAGCTGCCCATTCCGTCACTGTGA ATTTGTTTACAGGGAGACAGCTGCCCATTCCGTCACTGTGA < 41bp 1 0.426255065061423 1 0.0765998065471649 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203787706 chr1:203787700 synonymous SNV . 0 15 hm5C_associated_SNPs_3331 0 0 1 0 0 Nucleus 1 0.50023164391949 1 0.99953671216102 hm5C_site_6501 DeepMRMD:1;iRNA_m5C:0.99953671216102 6502 chr1 203787700 203787700 1 + T A rs4951260 203787710 + 203787690 203787730 41 GTTTACAGGGTGACAGCTGCCCATTCCGTCACTGTGAAGCT GTTTACAGGGAGACAGCTGCCCATTCCGTCACTGTGAAGCT < 41bp 1 0.0785753584439397 1 0.0839310884475708 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203787710 chr1:203787700 synonymous SNV . 0 11 hm5C_associated_SNPs_3332 0 0 1 0 0 Nucleus 1 0.500231643942633 1 0.999536712114733 hm5C_site_6502 DeepMRMD:1;iRNA_m5C:0.999536712114733 6503 chr1 203787700 203787700 1 + T A rs4951260 203787711 + 203787691 203787731 41 TTTACAGGGTGACAGCTGCCCATTCCGTCACTGTGAAGCTG TTTACAGGGAGACAGCTGCCCATTCCGTCACTGTGAAGCTG < 41bp 1 0.047397589471489 1 0.0639886856079102 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203787711 chr1:203787700 synonymous SNV . 0 10 hm5C_associated_SNPs_3333 0 0 1 0 0 Nucleus 1 0.500231608285902 1 0.999536783428196 hm5C_site_6503 DeepMRMD:1;iRNA_m5C:0.999536783428196 6504 chr1 204521271 204521271 1 + C T rs183822619 204521275 + 204521255 204521295 41 GCTGGGCATGGTGGTGCATGCCTGTAGTCCCAGCTACTCAG GCTGGGCATGGTGGTGTATGCCTGTAGTCCCAGCTACTCAG < 41bp 1 0.254467805865095 1 0.100570231676102 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521275 chr1:204521271 . . 0 17 hm5C_associated_SNPs_3334 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_6504 DeepMRMD:1;iRNA_m5C:0.999536712157814 6505 chr1 204521271 204521271 1 + C T rs183822619 204521276 + 204521256 204521296 41 CTGGGCATGGTGGTGCATGCCTGTAGTCCCAGCTACTCAGG CTGGGCATGGTGGTGTATGCCTGTAGTCCCAGCTACTCAGG < 41bp 1 0.661239869054052 1 0.777098178863525 experiment 0.677520261891897 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521276 chr1:204521271 . . 0 16 hm5C_associated_SNPs_3335 0 0 0 0 0 Cytosol 1 0.500227887850833 0.44580364227295 0.999544224298333 hm5C_site_6505 DeepMRMD:0.44580364227295;iRNA_m5C:0.999544224298333 6506 chr1 204521271 204521271 1 + C T rs183822619 204521283 + 204521263 204521303 41 TGGTGGTGCATGCCTGTAGTCCCAGCTACTCAGGAGGCTGA TGGTGGTGTATGCCTGTAGTCCCAGCTACTCAGGAGGCTGA < 41bp 1 0.239644557111634 1 0.323258280754089 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521283 chr1:204521271 . . 0 9 hm5C_associated_SNPs_3336 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6506 DeepMRMD:1;iRNA_m5C:0.999536712157815 6507 chr1 204521271 204521271 1 + C T rs183822619 204521284 + 204521264 204521304 41 GGTGGTGCATGCCTGTAGTCCCAGCTACTCAGGAGGCTGAG GGTGGTGTATGCCTGTAGTCCCAGCTACTCAGGAGGCTGAG < 41bp 1 0.150248130670889 1 0.411431312561035 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521284 chr1:204521271 . . 0 8 hm5C_associated_SNPs_3337 0 0 0 0 0 Cytosol 1 0.500225298785315 1 0.999549402429371 hm5C_site_6507 DeepMRMD:1;iRNA_m5C:0.999549402429371 6508 chr1 204521271 204521271 1 + C T rs183822619 204521285 + 204521265 204521305 41 GTGGTGCATGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGG GTGGTGTATGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGG < 41bp 1 0.222745434991407 1 0.748293161392212 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521285 chr1:204521271 . . 0 7 hm5C_associated_SNPs_3338 0 0 0 0 0 Cytosol 1 0.500231643921092 0.503413677215576 0.999536712157815 hm5C_site_6508 DeepMRMD:0.503413677215576;iRNA_m5C:0.999536712157815 6509 chr1 204521372 204521372 1 + G C rs192973436 204521359 + 204521339 204521379 41 TGCGGTGAGCTGAGATTGCGCCATTGCACCCCAGCCTGGGC TGCGGTGAGCTGAGATTGCGCCATTGCACCCCACCCTGGGC < 41bp 1 0.113171947046739 1 0.0763613283634186 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521359 chr1:204521372 . . 0 34 hm5C_associated_SNPs_3339 0 0 1 0 0 Cytosol 1 0.500231643921783 1 0.999536712156434 hm5C_site_6509 DeepMRMD:1;iRNA_m5C:0.999536712156434 6510 chr1 204521372 204521372 1 + G C rs192973436 204521360 + 204521340 204521380 41 GCGGTGAGCTGAGATTGCGCCATTGCACCCCAGCCTGGGCA GCGGTGAGCTGAGATTGCGCCATTGCACCCCACCCTGGGCA < 41bp 1 0.151952983798985 1 0.435360014438629 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521360 chr1:204521372 . . 0 33 hm5C_associated_SNPs_3340 0 0 1 0 0 Cytosol 1 0.500231643974449 1 0.999536712051102 hm5C_site_6510 DeepMRMD:1;iRNA_m5C:0.999536712051102 6511 chr1 204521372 204521372 1 + G C rs192973436 204521365 + 204521345 204521385 41 GAGCTGAGATTGCGCCATTGCACCCCAGCCTGGGCAACAAT GAGCTGAGATTGCGCCATTGCACCCCACCCTGGGCAACAAT < 41bp 1 0.15842757904482 1 0.282840192317963 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521365 chr1:204521372 . . 0 28 hm5C_associated_SNPs_3341 0 0 1 0 0 Cytosol 1 0.50023164392032 1 0.999536712159359 hm5C_site_6511 DeepMRMD:1;iRNA_m5C:0.999536712159359 6512 chr1 204521372 204521372 1 + G C rs192973436 204521367 + 204521347 204521387 41 GCTGAGATTGCGCCATTGCACCCCAGCCTGGGCAACAATAG GCTGAGATTGCGCCATTGCACCCCACCCTGGGCAACAATAG < 41bp 1 0.379617102105118 1 0.0716653764247894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521367 chr1:204521372 . . 0 26 hm5C_associated_SNPs_3342 0 0 1 0 0 Cytosol 1 0.500231643846502 1 0.999536712306996 hm5C_site_6512 DeepMRMD:1;iRNA_m5C:0.999536712306996 6513 chr1 204521372 204521372 1 + G C rs192973436 204521368 + 204521348 204521388 41 CTGAGATTGCGCCATTGCACCCCAGCCTGGGCAACAATAGC CTGAGATTGCGCCATTGCACCCCACCCTGGGCAACAATAGC < 41bp 1 0.0261953163224249 1 0.0875405967235565 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521368 chr1:204521372 . . 0 25 hm5C_associated_SNPs_3343 0 0 1 0 0 Cytosol 1 0.500215578949071 1 0.999568842101859 hm5C_site_6513 DeepMRMD:1;iRNA_m5C:0.999568842101859 6514 chr1 204521372 204521372 1 + G C rs192973436 204521369 + 204521349 204521389 41 TGAGATTGCGCCATTGCACCCCAGCCTGGGCAACAATAGCG TGAGATTGCGCCATTGCACCCCACCCTGGGCAACAATAGCG < 41bp 1 0.0366678641555845 1 0.0413037240505219 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521369 chr1:204521372 . . 0 24 hm5C_associated_SNPs_3344 0 0 1 0 0 Cytosol 1 0.500231643587953 1 0.999536712824094 hm5C_site_6514 DeepMRMD:1;iRNA_m5C:0.999536712824094 6515 chr1 204521372 204521372 1 + G C rs192973436 204521370 + 204521350 204521390 41 GAGATTGCGCCATTGCACCCCAGCCTGGGCAACAATAGCGA GAGATTGCGCCATTGCACCCCACCCTGGGCAACAATAGCGA < 41bp 1 0.0862657127787511 1 0.311015278100967 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521370 chr1:204521372 . . 0 23 hm5C_associated_SNPs_3345 0 0 1 0 0 Cytosol 1 0.50023163006619 1 0.99953673986762 hm5C_site_6515 DeepMRMD:1;iRNA_m5C:0.99953673986762 6516 chr1 204521372 204521372 1 + G C rs192973436 204521373 + 204521353 204521393 41 ATTGCGCCATTGCACCCCAGCCTGGGCAACAATAGCGAAAC ATTGCGCCATTGCACCCCACCCTGGGCAACAATAGCGAAAC < 41bp 1 0.12848805650509 1 0.121059089899063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521373 chr1:204521372 . . 0 20 hm5C_associated_SNPs_3346 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_6516 DeepMRMD:1;iRNA_m5C:0.999536712157815 6517 chr1 204521372 204521372 1 + G C rs192973436 204521374 + 204521354 204521394 41 TTGCGCCATTGCACCCCAGCCTGGGCAACAATAGCGAAACT TTGCGCCATTGCACCCCACCCTGGGCAACAATAGCGAAACT < 41bp 1 0.498639150101109 1 0.228962957859039 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521374 chr1:204521372 . . 0 19 hm5C_associated_SNPs_3347 0 0 1 0 0 Cytosol 1 0.500231643912047 1 0.999536712175907 hm5C_site_6517 DeepMRMD:1;iRNA_m5C:0.999536712175907 6518 chr1 204521372 204521372 1 + G C rs192973436 204521379 + 204521359 204521399 41 CCATTGCACCCCAGCCTGGGCAACAATAGCGAAACTGTCTC CCATTGCACCCCACCCTGGGCAACAATAGCGAAACTGTCTC < 41bp 1 0.254965666462014 1 0.0682034194469452 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521379 chr1:204521372 . . 0 14 hm5C_associated_SNPs_3348 0 0 1 0 0 Cytosol 1 0.500231643922276 1 0.999536712155448 hm5C_site_6518 DeepMRMD:1;iRNA_m5C:0.999536712155448 6519 chr1 204521516 204521516 1 + T A rs72644181 204521511 + 204521491 204521531 41 CCCAGGCTGGAGTGCAATGGCATGATCTCTGCTCACCGCAA CCCAGGCTGGAGTGCAATGGCATGAACTCTGCTCACCGCAA < 41bp 1 0.611007784164539 1 0.673057317733765 experiment 0.777984431670922 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521511 chr1:204521516 . . 0 26 hm5C_associated_SNPs_3349 0 0 1 0 0 Cytosol 1 0.500231643627288 0.65388536453247 0.999536712745424 hm5C_site_6519 DeepMRMD:0.65388536453247;iRNA_m5C:0.999536712745424 6520 chr1 204521520 204521520 1 + T C rs141321778 204521511 + 204521491 204521531 41 CCCAGGCTGGAGTGCAATGGCATGATCTCTGCTCACCGCAA CCCAGGCTGGAGTGCAATGGCATGATCTCCGCTCACCGCAA < 41bp 1 0.643501752026819 1 0.565849363803864 experiment 0.712996495946362 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204521511 chr1:204521520 . . 0 30 hm5C_associated_SNPs_3350 0 0 1 0 0 Cytosol 1 0.500231610836852 0.868301272392272 0.999536778326297 hm5C_site_6520 DeepMRMD:0.868301272392272;iRNA_m5C:0.999536778326297 6521 chr1 204524344 204524344 1 + G A rs543064117 204524354 + 204524334 204524374 41 GTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCC GTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCGCCTCC < 41bp 1 0.424893386749204 1 0.0197846591472626 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524354 chr1:204524344 . . 0 11 hm5C_associated_SNPs_3351 0 0 0 0 0 Cytosol 1 0.500231660985519 1 0.999536678028963 hm5C_site_6521 DeepMRMD:1;iRNA_m5C:0.999536678028963 6522 chr1 204524344 204524344 1 + G A rs543064117 204524356 + 204524336 204524376 41 GCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCG GCAGTGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCG < 41bp 1 0.357805147141968 1 0.0176896154880524 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524356 chr1:204524344 . . 0 9 hm5C_associated_SNPs_3352 0 0 0 0 0 Cytosol 1 0.500231982778284 1 0.999536034443431 hm5C_site_6522 DeepMRMD:1;iRNA_m5C:0.999536034443431 6523 chr1 204524344 204524344 1 + G A rs543064117 204524361 + 204524341 204524381 41 GGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTC GGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTC < 41bp 1 0.392134675238298 1 0.416293621063232 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524361 chr1:204524344 . . 0 4 hm5C_associated_SNPs_3353 0 0 0 0 0 Cytosol 1 0.500231643921155 1 0.99953671215769 hm5C_site_6523 DeepMRMD:1;iRNA_m5C:0.99953671215769 6524 chr1 204524344 204524344 1 + G A rs543064117 204524364 + 204524344 204524384 41 GCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACC ACGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACC < 41bp 1 0.0818945907288304 1 0.0623882114887238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524364 chr1:204524344 . . 0 1 hm5C_associated_SNPs_3354 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6524 DeepMRMD:1;iRNA_m5C:0.999536712157815 6525 chr1 204524361 204524361 1 + C G rs533621807 204524354 + 204524334 204524374 41 GTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCC GTGCAGTGGCGCGATCTCGGCTCACTGGAACCTCCGCCTCC < 41bp 1 0.454526284888155 1 0.0492396354675293 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524354 chr1:204524361 . . 0 28 hm5C_associated_SNPs_3355 0 0 0 0 0 Cytosol 1 0.500231646038058 1 0.999536707923884 hm5C_site_6525 DeepMRMD:1;iRNA_m5C:0.999536707923884 6526 chr1 204524361 204524361 1 + C G rs533621807 204524356 + 204524336 204524376 41 GCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCG GCAGTGGCGCGATCTCGGCTCACTGGAACCTCCGCCTCCCG < 41bp 1 0.491047193955658 1 0.0748710632324219 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524356 chr1:204524361 . . 0 26 hm5C_associated_SNPs_3356 0 0 0 0 0 Cytosol 1 0.500235274775726 1 0.999529450448548 hm5C_site_6526 DeepMRMD:1;iRNA_m5C:0.999529450448548 6527 chr1 204524361 204524361 1 + C G rs533621807 204524364 + 204524344 204524384 41 GCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACC GCGATCTCGGCTCACTGGAACCTCCGCCTCCCGGGTTCACC < 41bp 1 0.0877531679017316 1 0.0377320647239685 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524364 chr1:204524361 . . 0 18 hm5C_associated_SNPs_3357 0 0 0 0 0 Cytosol 1 0.500231643921106 1 0.999536712157787 hm5C_site_6527 DeepMRMD:1;iRNA_m5C:0.999536712157787 6528 chr1 204524361 204524361 1 + C G rs533621807 204524365 + 204524345 204524385 41 CGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACCC CGATCTCGGCTCACTGGAACCTCCGCCTCCCGGGTTCACCC < 41bp 1 0.616544014423557 1 0.3247010409832 experiment 0.766911971152886 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524365 chr1:204524361 . . 0 17 hm5C_associated_SNPs_3358 0 0 0 0 0 Cytosol 1 0.500231644519801 1 0.999536710960399 hm5C_site_6528 DeepMRMD:1;iRNA_m5C:0.999536710960399 6529 chr1 204524361 204524361 1 + C G rs533621807 204524367 + 204524347 204524387 41 ATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACCCCA ATCTCGGCTCACTGGAACCTCCGCCTCCCGGGTTCACCCCA < 41bp 1 0.302149983050665 1 0.14276972413063 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524367 chr1:204524361 . . 0 15 hm5C_associated_SNPs_3359 0 0 0 0 0 Cytosol 1 0.500231788889208 1 0.999536422221584 hm5C_site_6529 DeepMRMD:1;iRNA_m5C:0.999536422221584 6530 chr1 204524361 204524361 1 + C G rs533621807 204524368 + 204524348 204524388 41 TCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACCCCAT TCTCGGCTCACTGGAACCTCCGCCTCCCGGGTTCACCCCAT < 41bp 1 0.498616081235269 1 0.693879842758179 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524368 chr1:204524361 . . 0 14 hm5C_associated_SNPs_3360 0 0 0 0 0 Cytosol 1 0.500231643921092 0.612240314483642 0.999536712157815 hm5C_site_6530 DeepMRMD:0.612240314483642;iRNA_m5C:0.999536712157815 6531 chr1 204524361 204524361 1 + C G rs533621807 204524370 + 204524350 204524390 41 TCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACCCCATTC TCGGCTCACTGGAACCTCCGCCTCCCGGGTTCACCCCATTC < 41bp 1 0.0659427612347904 1 0.0659132301807404 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524370 chr1:204524361 . . 0 12 hm5C_associated_SNPs_3361 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6531 DeepMRMD:1;iRNA_m5C:0.999536712157815 6532 chr1 204524361 204524361 1 + C G rs533621807 204524371 + 204524351 204524391 41 CGGCTCACTGCAACCTCCGCCTCCCGGGTTCACCCCATTCT CGGCTCACTGGAACCTCCGCCTCCCGGGTTCACCCCATTCT < 41bp 1 0.296627992668164 1 0.236247032880783 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524371 chr1:204524361 . . 0 11 hm5C_associated_SNPs_3362 0 0 0 0 0 Cytosol 1 0.500231643921116 1 0.999536712157768 hm5C_site_6532 DeepMRMD:1;iRNA_m5C:0.999536712157768 6533 chr1 204524361 204524361 1 + C G rs533621807 204524373 + 204524353 204524393 41 GCTCACTGCAACCTCCGCCTCCCGGGTTCACCCCATTCTCC GCTCACTGGAACCTCCGCCTCCCGGGTTCACCCCATTCTCC < 41bp 1 0.637370998414968 1 0.498465180397034 experiment 0.725258003170063 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524373 chr1:204524361 . . 0 9 hm5C_associated_SNPs_3363 0 0 0 0 0 Cytosol 1 0.500231643549262 1 0.999536712901475 hm5C_site_6533 DeepMRMD:1;iRNA_m5C:0.999536712901475 6534 chr1 204524361 204524361 1 + C G rs533621807 204524374 + 204524354 204524394 41 CTCACTGCAACCTCCGCCTCCCGGGTTCACCCCATTCTCCT CTCACTGGAACCTCCGCCTCCCGGGTTCACCCCATTCTCCT < 41bp 1 0.535458821074951 1 0.433276802301407 experiment 0.929082357850097 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524374 chr1:204524361 . . 0 8 hm5C_associated_SNPs_3364 0 0 0 0 0 Cytosol 1 0.500228205299744 1 0.999543589400512 hm5C_site_6534 DeepMRMD:1;iRNA_m5C:0.999543589400512 6535 chr1 204524376 204524376 1 + G A rs561516114 204524356 + 204524336 204524376 41 GCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCG GCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCA < 41bp 1 0.392385106888569 1 0.0316761434078217 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524356 chr1:204524376 . . 0 41 hm5C_associated_SNPs_3366 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157813 hm5C_site_6535 DeepMRMD:1;iRNA_m5C:0.999536712157813 6536 chr1 204524376 204524376 1 + G A rs561516114 204524361 + 204524341 204524381 41 GGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTC GGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTC < 41bp 1 0.36729984518687 1 0.205585330724716 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524361 chr1:204524376 . . 0 36 hm5C_associated_SNPs_3367 0 0 0 0 0 Cytosol 1 0.500231643974502 1 0.999536712050995 hm5C_site_6536 DeepMRMD:1;iRNA_m5C:0.999536712050995 6537 chr1 204524376 204524376 1 + G A rs561516114 204524364 + 204524344 204524384 41 GCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACC GCGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCACC < 41bp 1 0.0816000495265958 1 0.0736832916736603 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524364 chr1:204524376 . . 0 33 hm5C_associated_SNPs_3368 0 0 0 0 0 Cytosol 1 0.50023164392509 1 0.999536712149819 hm5C_site_6537 DeepMRMD:1;iRNA_m5C:0.999536712149819 6538 chr1 204524376 204524376 1 + G A rs561516114 204524365 + 204524345 204524385 41 CGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACCC CGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCACCC < 41bp 1 0.595259440913788 1 0.163080513477325 experiment 0.809481118172423 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524365 chr1:204524376 . . 0 32 hm5C_associated_SNPs_3369 0 0 0 0 0 Cytosol 1 0.500231641717485 1 0.99953671656503 hm5C_site_6538 DeepMRMD:1;iRNA_m5C:0.99953671656503 6539 chr1 204524376 204524376 1 + G A rs561516114 204524367 + 204524347 204524387 41 ATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACCCCA ATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCACCCCA < 41bp 1 0.277260313971806 1 0.0727742314338684 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524367 chr1:204524376 . . 0 30 hm5C_associated_SNPs_3370 0 0 0 0 0 Cytosol 1 0.500231682471195 1 0.99953663505761 hm5C_site_6539 DeepMRMD:1;iRNA_m5C:0.99953663505761 6540 chr1 204524376 204524376 1 + G A rs561516114 204524368 + 204524348 204524388 41 TCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACCCCAT TCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCACCCCAT < 41bp 1 0.431548000054359 1 0.262779057025909 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524368 chr1:204524376 . . 0 29 hm5C_associated_SNPs_3371 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_6540 DeepMRMD:1;iRNA_m5C:0.999536712157815 6541 chr1 204524376 204524376 1 + G A rs561516114 204524370 + 204524350 204524390 41 TCGGCTCACTGCAACCTCCGCCTCCCGGGTTCACCCCATTC TCGGCTCACTGCAACCTCCGCCTCCCAGGTTCACCCCATTC < 41bp 1 0.0670708869654269 1 0.0586060881614685 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524370 chr1:204524376 . . 0 27 hm5C_associated_SNPs_3372 0 0 0 0 0 Cytosol 1 0.500231644122296 1 0.999536711755408 hm5C_site_6541 DeepMRMD:1;iRNA_m5C:0.999536711755408 6542 chr1 204524376 204524376 1 + G A rs561516114 204524371 + 204524351 204524391 41 CGGCTCACTGCAACCTCCGCCTCCCGGGTTCACCCCATTCT CGGCTCACTGCAACCTCCGCCTCCCAGGTTCACCCCATTCT < 41bp 1 0.237990298164244 1 0.276547938585281 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524371 chr1:204524376 . . 0 26 hm5C_associated_SNPs_3373 0 0 0 0 0 Cytosol 1 0.500231646389467 1 0.999536707221067 hm5C_site_6542 DeepMRMD:1;iRNA_m5C:0.999536707221067 6543 chr1 204524376 204524376 1 + G A rs561516114 204524373 + 204524353 204524393 41 GCTCACTGCAACCTCCGCCTCCCGGGTTCACCCCATTCTCC GCTCACTGCAACCTCCGCCTCCCAGGTTCACCCCATTCTCC < 41bp 1 0.376836870642204 1 0.110305368900299 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524373 chr1:204524376 . . 0 24 hm5C_associated_SNPs_3374 0 0 0 0 0 Cytosol 1 0.500231643438683 1 0.999536713122634 hm5C_site_6543 DeepMRMD:1;iRNA_m5C:0.999536713122634 6544 chr1 204524376 204524376 1 + G A rs561516114 204524374 + 204524354 204524394 41 CTCACTGCAACCTCCGCCTCCCGGGTTCACCCCATTCTCCT CTCACTGCAACCTCCGCCTCCCAGGTTCACCCCATTCTCCT < 41bp 1 0.355692223175958 1 0.106636494398117 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524374 chr1:204524376 . . 0 23 hm5C_associated_SNPs_3375 0 0 0 0 0 Cytosol 1 0.500231643921083 1 0.999536712157834 hm5C_site_6544 DeepMRMD:1;iRNA_m5C:0.999536712157834 6545 chr1 204524376 204524376 1 + G A rs561516114 204524375 + 204524355 204524395 41 TCACTGCAACCTCCGCCTCCCGGGTTCACCCCATTCTCCTG TCACTGCAACCTCCGCCTCCCAGGTTCACCCCATTCTCCTG < 41bp 1 0.674027424276664 1 0.314512401819229 experiment 0.651945151446673 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204524375 chr1:204524376 . . 0 22 hm5C_associated_SNPs_3376 0 0 0 0 0 Cytosol 1 0.500231643161415 1 0.99953671367717 hm5C_site_6545 DeepMRMD:1;iRNA_m5C:0.99953671367717 6546 chr1 204525554 204525554 1 + G A rs147845679 204525547 + 204525527 204525567 41 CTAAGAAATTGAGGTCAGGCCAGGCGCGGTGGTTCACTCCT CTAAGAAATTGAGGTCAGGCCAGGCGCAGTGGTTCACTCCT < 41bp 1 0.583482669235138 1 0.489731281995773 experiment 0.833034661529723 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204525547 chr1:204525554 . . 0 28 hm5C_associated_SNPs_3377 0 0 1 0 0 Cytosol 1 0.500231644004089 1 0.999536711991822 hm5C_site_6546 DeepMRMD:1;iRNA_m5C:0.999536711991822 6547 chr1 204525556 204525556 1 + T G rs561059099 204525547 + 204525527 204525567 41 CTAAGAAATTGAGGTCAGGCCAGGCGCGGTGGTTCACTCCT CTAAGAAATTGAGGTCAGGCCAGGCGCGGGGGTTCACTCCT < 41bp 1 0.622084968203294 1 0.374592781066895 experiment 0.755830063593412 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MDM4 ENSG00000198625 UTR3 Human protein_coding chr1:204525547 chr1:204525556 . . 0 30 hm5C_associated_SNPs_3378 0 0 1 0 0 Cytosol 1 0.500231646072912 1 0.999536707854177 hm5C_site_6547 DeepMRMD:1;iRNA_m5C:0.999536707854177 6548 chr1 206627913 206627913 1 + C T rs56018553 206627917 + 206627897 206627937 41 GGAGGCCGCCCCAGCACGGCCTCCCCAGGAAGCAGCATGGG GGAGGCCGCCCCAGCATGGCCTCCCCAGGAAGCAGCATGGG < 41bp 1 0.109598670070621 1 0.0719137489795685 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRGAP2 ENSG00000163486 intronic Human other chr1:206627917 chr1:206627913 . . 0 17 hm5C_associated_SNPs_3380 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_6548 DeepMRMD:1;iRNA_m5C:0.999536712157815 6549 chr1 206821286 206821286 1 + G A rs146834595 206821305 + 206821285 206821325 41 CGTCAAGCAGCTGAGGAGATCCGGATTTTGGAGCATCTTAA CATCAAGCAGCTGAGGAGATCCGGATTTTGGAGCATCTTAA < 41bp 1 0.564756754268132 1 0.556938707828522 experiment 0.870486491463736 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYRK3 ENSG00000143479 CDS Human protein_coding chr1:206821305 chr1:206821286 nonsynonymous SNV 0.993 3 2 hm5C_associated_SNPs_3381 0 0 1 0 0 Cytosol 1 0.500231643921022 0.886122584342956 0.999536712157955 hm5C_site_6549 DeepMRMD:0.886122584342956;iRNA_m5C:0.999536712157955 6550 chr1 206902144 206902144 1 + G A rs145730948 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATCGTGGATGTATACGAGAATCT < 41bp 1 0.502334658608975 1 0.21772712469101 experiment 0.995330682782051 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902144 synonymous SNV . 0 30 hm5C_associated_SNPs_3382 0 0 1 0 2 Ribosome 1 0.50023233886635 1 0.999535322267301 hm5C_site_6550 DeepMRMD:1;iRNA_m5C:0.999535322267301 6551 chr1 207967325 207967325 1 + A G rs2724390 207967310 + 207967290 207967330 41 TTTTTGTTCAAAGATTAATGCCAACTCTTAAGATTATTCTT TTTTTGTTCAAAGATTAATGCCAACTCTTAAGATTGTTCTT < 41bp 1 0.0714736437141878 1 0.0860656201839447 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CD46 ENSG00000117335 UTR3 Human protein_coding chr1:207967310 chr1:207967325 . . 0 36 hm5C_associated_SNPs_3383 1 0 1 1 0 Endoplasmic reticulum 1 0.500218500132186 1 0.999562999735627 hm5C_site_6551 DeepMRMD:1;iRNA_m5C:0.999562999735627 Atypical hemolytic uremic syndrome Atypical hemolytic uremic syndrome 6552 chr1 207967325 207967325 1 + A G rs2724390 207967311 + 207967291 207967331 41 TTTTGTTCAAAGATTAATGCCAACTCTTAAGATTATTCTTT TTTTGTTCAAAGATTAATGCCAACTCTTAAGATTGTTCTTT < 41bp 1 0.198013874844999 1 0.0465032160282135 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CD46 ENSG00000117335 UTR3 Human protein_coding chr1:207967311 chr1:207967325 . . 0 35 hm5C_associated_SNPs_3384 1 0 1 1 0 Endoplasmic reticulum 1 0.500231643942951 1 0.999536712114098 hm5C_site_6552 DeepMRMD:1;iRNA_m5C:0.999536712114098 Atypical hemolytic uremic syndrome Atypical hemolytic uremic syndrome 6553 chr1 207967326 207967326 1 + T C rs146017739 207967310 + 207967290 207967330 41 TTTTTGTTCAAAGATTAATGCCAACTCTTAAGATTATTCTT TTTTTGTTCAAAGATTAATGCCAACTCTTAAGATTACTCTT < 41bp 1 0.0776860403817698 1 0.0436117947101593 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CD46 ENSG00000117335 UTR3 Human protein_coding chr1:207967310 chr1:207967326 . . 0 37 hm5C_associated_SNPs_3385 0 0 1 2 0 Endoplasmic reticulum 1 0.50021849826795 1 0.999563003464099 hm5C_site_6553 DeepMRMD:1;iRNA_m5C:0.999563003464099 6554 chr1 207967326 207967326 1 + T C rs146017739 207967311 + 207967291 207967331 41 TTTTGTTCAAAGATTAATGCCAACTCTTAAGATTATTCTTT TTTTGTTCAAAGATTAATGCCAACTCTTAAGATTACTCTTT < 41bp 1 0.232414088503121 1 0.0459014773368835 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CD46 ENSG00000117335 UTR3 Human protein_coding chr1:207967311 chr1:207967326 . . 0 36 hm5C_associated_SNPs_3386 0 0 1 2 0 Endoplasmic reticulum 1 0.500231643921111 1 0.999536712157778 hm5C_site_6554 DeepMRMD:1;iRNA_m5C:0.999536712157778 6555 chr1 210847740 210847740 1 + A C rs4366378 210847733 + 210847713 210847753 41 ACGGACTAATGCTGTTGGGCCCAGGCCAGTCCTTGTTGCTG ACGGACTAATGCTGTTGGGCCCAGGCCCGTCCTTGTTGCTG < 41bp 1 0.296545997643921 1 0.216660737991333 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HHAT ENSG00000054392 UTR3 Human protein_coding chr1:210847733 chr1:210847740 . . 0 28 hm5C_associated_SNPs_3387 0 1 0 2 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6555 DeepMRMD:1;iRNA_m5C:0.999536712157815 6556 chr1 212619339 212619339 1 + T C rs4804 212619354 + 212619334 212619374 41 AAGGATGAGTTCTGATGTTCCCCCTGCAGGAGCAGGTTCTT AAGGACGAGTTCTGATGTTCCCCCTGCAGGAGCAGGTTCTT < 41bp 1 0.328168590914436 1 0.117375016212463 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NENF ENSG00000117691 CDS Human protein_coding chr1:212619354 chr1:212619339 synonymous SNV . 0 6 hm5C_associated_SNPs_3389 0 0 1 0 0 Cytosol 1 0.500231635485248 1 0.999536729029503 hm5C_site_6556 DeepMRMD:1;iRNA_m5C:0.999536729029503 6557 chr1 212793050 212793050 1 + A G rs1803173 212793053 + 212793033 212793073 41 GCCTGCAGTGATTCAGCAGGCCCTTCCCATTCTGCCCCAGA GCCTGCAGTGATTCAGCGGGCCCTTCCCATTCTGCCCCAGA < 41bp 1 0.104626002778369 1 0.0561382174491882 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793053 chr1:212793050 . . 0 18 hm5C_associated_SNPs_3391 0 0 1 1 0 Cytoplasm 1 0.500231643914929 1 0.999536712170141 hm5C_site_6557 DeepMRMD:1;iRNA_m5C:0.999536712170141 6558 chr1 212793050 212793050 1 + A G rs1803173 212793054 + 212793034 212793074 41 CCTGCAGTGATTCAGCAGGCCCTTCCCATTCTGCCCCAGAG CCTGCAGTGATTCAGCGGGCCCTTCCCATTCTGCCCCAGAG < 41bp 1 0.0277962522231986 1 0.0585522651672363 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793054 chr1:212793050 . . 0 17 hm5C_associated_SNPs_3392 0 0 1 1 0 Cytoplasm 1 0.5002316439211 1 0.9995367121578 hm5C_site_6558 DeepMRMD:1;iRNA_m5C:0.9995367121578 6559 chr1 212793050 212793050 1 + A G rs1803173 212793055 + 212793035 212793075 41 CTGCAGTGATTCAGCAGGCCCTTCCCATTCTGCCCCAGAGT CTGCAGTGATTCAGCGGGCCCTTCCCATTCTGCCCCAGAGT < 41bp 1 0.132416218209266 1 0.0498566627502441 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793055 chr1:212793050 . . 0 16 hm5C_associated_SNPs_3393 0 0 1 1 0 Cytoplasm 1 0.500231643674384 1 0.999536712651233 hm5C_site_6559 DeepMRMD:1;iRNA_m5C:0.999536712651233 6560 chr1 212793050 212793050 1 + A G rs1803173 212793060 + 212793040 212793080 41 GTGATTCAGCAGGCCCTTCCCATTCTGCCCCAGAGTGGGTC GTGATTCAGCGGGCCCTTCCCATTCTGCCCCAGAGTGGGTC < 41bp 1 0.204848296698618 1 0.138015478849411 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793060 chr1:212793050 . . 0 11 hm5C_associated_SNPs_3394 0 0 1 1 0 Cytoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_6560 DeepMRMD:1;iRNA_m5C:0.999536712157815 6561 chr1 212793832 212793832 1 + G A rs569236636 212793848 + 212793828 212793868 41 GGGTGGTACCCAGGCTTTAGCATTATTGGATGTCAATAGCA GGGTAGTACCCAGGCTTTAGCATTATTGGATGTCAATAGCA < 41bp 1 0.413198957144825 1 0.17647910118103 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793848 chr1:212793832 . . 0 5 hm5C_associated_SNPs_3395 0 0 1 1 0 Cytoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_6561 DeepMRMD:1;iRNA_m5C:0.999536712157815 6562 chr1 212793849 212793849 1 + A G rs1126700 212793848 + 212793828 212793868 41 GGGTGGTACCCAGGCTTTAGCATTATTGGATGTCAATAGCA GGGTGGTACCCAGGCTTTAGCGTTATTGGATGTCAATAGCA < 41bp 1 0.468348215329628 1 0.410795569419861 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793848 chr1:212793849 . . 0 22 hm5C_associated_SNPs_3396 0 0 1 1 0 Cytoplasm 1 0.500231643921093 1 0.999536712157815 hm5C_site_6562 DeepMRMD:1;iRNA_m5C:0.999536712157815 6563 chr1 214794279 214794279 1 + G A rs114104425 214794259 + 214794239 214794279 41 ACAATTCTAGCAGTCCTCATCTTTTGGATCAATTAAAAGCG ACAATTCTAGCAGTCCTCATCTTTTGGATCAATTAAAAGCA < 41bp 1 0.0399663746329679 1 0.147414118051529 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214794259 chr1:214794279 synonymous SNV . 0 41 hm5C_associated_SNPs_3397 0 0 1 0 1 Nucleus 1 0.500231643920056 1 0.999536712159888 hm5C_site_6563 DeepMRMD:1;iRNA_m5C:0.999536712159888 6564 chr1 214814504 214814504 1 + A G rs549879703 214814517 + 214814497 214814537 41 ACTCTCTAAAGGAGCTACAACTTTTATCCGAAACCCTAAGC ACTCTCTGAAGGAGCTACAACTTTTATCCGAAACCCTAAGC < 41bp 1 0.0549833656114267 1 0.069490522146225 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214814517 chr1:214814504 synonymous SNV . 0 8 hm5C_associated_SNPs_3398 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6564 DeepMRMD:1;iRNA_m5C:0.999536712157815 6565 chr1 214814504 214814504 1 + A G rs549879703 214814524 + 214814504 214814544 41 AAAGGAGCTACAACTTTTATCCGAAACCCTAAGCTTGGAGA GAAGGAGCTACAACTTTTATCCGAAACCCTAAGCTTGGAGA < 41bp 1 0.230989413730343 1 0.419374376535416 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214814524 chr1:214814504 synonymous SNV . 0 1 hm5C_associated_SNPs_3399 0 0 1 0 0 Nucleus 1 0.500231643844624 1 0.999536712310752 hm5C_site_6565 DeepMRMD:1;iRNA_m5C:0.999536712310752 6566 chr1 214819463 214819463 1 + G A rs62623663 214819453 + 214819433 214819473 41 ATTCTTGATGCCGAGAATTCCAAAGCAGAAGTAGAGACTCT ATTCTTGATGCCGAGAATTCCAAAGCAGAAATAGAGACTCT < 41bp 1 0.311043187140709 1 0.552859127521515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214819453 chr1:214819463 nonsynonymous SNV 0.912 0 31 hm5C_associated_SNPs_3400 0 0 1 0 0 Nucleus 1 0.500231643946362 0.89428174495697 0.999536712107277 hm5C_site_6566 DeepMRMD:0.89428174495697;iRNA_m5C:0.999536712107277 6567 chr1 215740806 215740806 1 + C T rs540761081 215740810 + 215740790 215740830 41 CGCGAAAGGTGGAGGCCGGGCCGCCCTTGTGCACCGCAGGA CGCGAAAGGTGGAGGCTGGGCCGCCCTTGTGCACCGCAGGA < 41bp 1 0.41534237952688 1 0.290994852781296 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KCTD3 ENSG00000136636 UTR5 Human protein_coding chr1:215740810 chr1:215740806 . . 0 17 hm5C_associated_SNPs_3401 0 0 1 0 0 Ribosome 1 0.500231644225594 1 0.999536711548813 hm5C_site_6567 DeepMRMD:1;iRNA_m5C:0.999536711548813 6568 chr1 215740806 215740806 1 + C T rs540761081 215740813 + 215740793 215740833 41 GAAAGGTGGAGGCCGGGCCGCCCTTGTGCACCGCAGGATTG GAAAGGTGGAGGCTGGGCCGCCCTTGTGCACCGCAGGATTG < 41bp 1 0.35893262070462 1 0.0897831320762634 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KCTD3 ENSG00000136636 UTR5 Human protein_coding chr1:215740813 chr1:215740806 . . 0 14 hm5C_associated_SNPs_3403 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6568 DeepMRMD:1;iRNA_m5C:0.999536712157815 6569 chr1 215740806 215740806 1 + C T rs540761081 215740814 + 215740794 215740834 41 AAAGGTGGAGGCCGGGCCGCCCTTGTGCACCGCAGGATTGA AAAGGTGGAGGCTGGGCCGCCCTTGTGCACCGCAGGATTGA < 41bp 1 0.197792379297022 1 0.096869945526123 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KCTD3 ENSG00000136636 UTR5 Human protein_coding chr1:215740814 chr1:215740806 . . 0 13 hm5C_associated_SNPs_3404 0 0 1 0 0 Ribosome 1 0.500231643860447 1 0.999536712279107 hm5C_site_6569 DeepMRMD:1;iRNA_m5C:0.999536712279107 6570 chr1 215740806 215740806 1 + C T rs540761081 215740815 + 215740795 215740835 41 AAGGTGGAGGCCGGGCCGCCCTTGTGCACCGCAGGATTGAC AAGGTGGAGGCTGGGCCGCCCTTGTGCACCGCAGGATTGAC < 41bp 1 0.509635852407145 1 0.131353378295898 experiment 0.98072829518571 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KCTD3 ENSG00000136636 UTR5 Human protein_coding chr1:215740815 chr1:215740806 . . 0 12 hm5C_associated_SNPs_3405 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6570 DeepMRMD:1;iRNA_m5C:0.999536712157815 6571 chr1 215740939 215740939 1 + C T rs562348854 215740919 + 215740899 215740939 41 CACCCCCCGCCCTCCGGCCGCCGCCGCCCCGCTGGCCCTGC CACCCCCCGCCCTCCGGCCGCCGCCGCCCCGCTGGCCCTGT < 41bp 1 0.357407972723295 1 0.582338988780975 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCTD3 ENSG00000136636 UTR5 Human protein_coding chr1:215740919 chr1:215740939 . . 0 41 hm5C_associated_SNPs_3406 0 0 1 0 0 Ribosome 1 0.500231643921093 0.83532202243805 0.999536712157814 hm5C_site_6571 DeepMRMD:0.83532202243805;iRNA_m5C:0.999536712157814 6572 chr1 220279330 220279330 1 + G A rs143373097 220279315 + 220279295 220279335 41 TTACCTGCAAATCATGTGACCATGGCAAAAGGAACGGGATT TTACCTGCAAATCATGTGACCATGGCAAAAGGAACAGGATT < 41bp 1 0.192793939109741 1 0.423068046569824 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IARS2 ENSG00000067704 CDS Human protein_coding chr1:220279315 chr1:220279330 synonymous SNV . 0 36 hm5C_associated_SNPs_3407 0 0 1 0 2 Ribosome 1 0.500231726830589 1 0.999536546338822 hm5C_site_6572 DeepMRMD:1;iRNA_m5C:0.999536546338822 6573 chr1 220922002 220922002 1 + A G rs72472371 220921996 + 220921976 220922016 41 CTGGGGACTGTCGCCTGGCGCCGCGCATGGCCCAGGCGGCG CTGGGGACTGTCGCCTGGCGCCGCGCGTGGCCCAGGCGGCG < 41bp 1 0.694414233903636 1 0.411056339740753 experiment 0.611171532192729 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220921996 chr1:220922002 synonymous SNV . 0 27 hm5C_associated_SNPs_3408 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6573 DeepMRMD:1;iRNA_m5C:0.999536712157815 6574 chr1 220922002 220922002 1 + A G rs72472371 220922017 + 220921997 220922037 41 CGCGCATGGCCCAGGCGGCGCCGGCGGCTGCAGCAGGTGGG CGCGCGTGGCCCAGGCGGCGCCGGCGGCTGCAGCAGGTGGG < 41bp 1 0.651174101808607 1 0.596660733222961 experiment 0.697651796382785 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220922017 chr1:220922002 synonymous SNV . 0 6 hm5C_associated_SNPs_3409 0 0 1 0 0 nucleus 1 0.500231643921096 0.806678533554078 0.999536712157809 hm5C_site_6574 DeepMRMD:0.806678533554078;iRNA_m5C:0.999536712157809 6575 chr1 220928376 220928376 1 + T C rs371348 220928383 + 220928363 220928403 41 TCATTTATGAGAATAACTGCCTGATCTTCAGGGCTCCAGAC TCATTTATGAGAACAACTGCCTGATCTTCAGGGCTCCAGAC < 41bp 1 0.454537039889894 1 0.0354971885681152 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928383 chr1:220928376 synonymous SNV . 0 14 hm5C_associated_SNPs_3410 0 0 1 0 2 nucleus 1 0.500231643920127 1 0.999536712159746 hm5C_site_6575 DeepMRMD:1;iRNA_m5C:0.999536712159746 6576 chr1 220964926 220964926 1 + C T rs35887054 220964927 + 220964907 220964947 41 TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCTAC TGACCTGCGATGGTGACACTCTGACTCTCAGTGCAGCCTAC < 41bp 1 0.516811550072502 1 0.112009823322296 experiment 0.966376899854996 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964927 chr1:220964926 synonymous SNV . 0 20 hm5C_associated_SNPs_3413 0 0 1 0 2 Ribosome 1 0.500239095711882 1 0.999521808576236 hm5C_site_6576 DeepMRMD:1;iRNA_m5C:0.999521808576236 6577 chr1 220970028 220970028 1 + A G rs2642438 220970029 + 220970009 220970049 41 CAGGGACTGTGGCGAGGCCACCGCCCAGTGGATAACCAGCT CAGGGACTGTGGCGAGGCCGCCGCCCAGTGGATAACCAGCT < 41bp 1 0.228070977097724 1 0.301815450191498 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970029 chr1:220970028 nonsynonymous SNV 0.005 0 20 hm5C_associated_SNPs_3416 0 1 0 0 0 Ribosome 1 0.500231643921105 1 0.99953671215779 hm5C_site_6577 DeepMRMD:1;iRNA_m5C:0.99953671215779 6578 chr1 220970031 220970031 1 + G A rs140778482 220970029 + 220970009 220970049 41 CAGGGACTGTGGCGAGGCCACCGCCCAGTGGATAACCAGCT CAGGGACTGTGGCGAGGCCACCACCCAGTGGATAACCAGCT < 41bp 1 0.152160713139219 1 0.107665985822678 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970029 chr1:220970031 nonsynonymous SNV 0.072 3 23 hm5C_associated_SNPs_3417 0 0 0 0 0 Ribosome 1 0.500231643921033 1 0.999536712157933 hm5C_site_6578 DeepMRMD:1;iRNA_m5C:0.999536712157933 6579 chr1 222638350 222638350 1 + T G rs533469480 222638349 + 222638329 222638369 41 AAAACAACGCCTCACGTGGGCTCCATAGCTCAGTGGTTAGA AAAACAACGCCTCACGTGGGCGCCATAGCTCAGTGGTTAGA < 41bp 1 0.500886643658516 1 0.506060063838959 experiment 0.998226712682969 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01655;HHIPL2 ENSG00000226643;ENSG00000234419 intergenic Human other chr1:222638349 chr1:222638350 . . 0 22 hm5C_associated_SNPs_3418 0 0 1 0 0 unknown 1 0.500231641105379 0.987879872322082 0.999536717789242 hm5C_site_6579 DeepMRMD:0.987879872322082;iRNA_m5C:0.999536717789242 6580 chr1 222638350 222638350 1 + T G rs533469480 222638351 + 222638331 222638371 41 AACAACGCCTCACGTGGGCTCCATAGCTCAGTGGTTAGAGC AACAACGCCTCACGTGGGCGCCATAGCTCAGTGGTTAGAGC < 41bp 1 0.0840978351020447 1 0.212290674448013 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01655;HHIPL2 ENSG00000226643;ENSG00000234419 intergenic Human other chr1:222638351 chr1:222638350 . . 0 20 hm5C_associated_SNPs_3419 0 0 1 0 0 unknown 1 0.500231628178721 1 0.999536743642559 hm5C_site_6580 DeepMRMD:1;iRNA_m5C:0.999536743642559 6581 chr1 222638350 222638350 1 + T G rs533469480 222638352 + 222638332 222638372 41 ACAACGCCTCACGTGGGCTCCATAGCTCAGTGGTTAGAGCA ACAACGCCTCACGTGGGCGCCATAGCTCAGTGGTTAGAGCA < 41bp 1 0.138586086934056 1 0.437036037445068 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01655;HHIPL2 ENSG00000226643;ENSG00000234419 intergenic Human other chr1:222638352 chr1:222638350 . . 0 19 hm5C_associated_SNPs_3420 0 0 1 0 0 unknown 1 0.500231643555182 1 0.999536712889636 hm5C_site_6581 DeepMRMD:1;iRNA_m5C:0.999536712889636 6582 chr1 222638350 222638350 1 + T G rs533469480 222638357 + 222638337 222638377 41 GCCTCACGTGGGCTCCATAGCTCAGTGGTTAGAGCACTGGT GCCTCACGTGGGCGCCATAGCTCAGTGGTTAGAGCACTGGT < 41bp 1 0.620780414882521 1 0.457435667514801 experiment 0.758439170234957 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01655;HHIPL2 ENSG00000226643;ENSG00000234419 intergenic Human other chr1:222638357 chr1:222638350 . . 0 14 hm5C_associated_SNPs_3421 0 0 1 0 0 unknown 1 0.500231643926806 1 0.999536712146388 hm5C_site_6582 DeepMRMD:1;iRNA_m5C:0.999536712146388 6583 chr1 222638350 222638350 1 + T G rs533469480 222638359 + 222638339 222638379 41 CTCACGTGGGCTCCATAGCTCAGTGGTTAGAGCACTGGTCT CTCACGTGGGCGCCATAGCTCAGTGGTTAGAGCACTGGTCT < 41bp 1 0.635643491073103 1 0.783258080482483 experiment 0.728713017853793 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01655;HHIPL2 ENSG00000226643;ENSG00000234419 intergenic Human other chr1:222638359 chr1:222638350 . . 0 12 hm5C_associated_SNPs_3422 0 0 1 0 0 unknown 1 0.500231643921855 0.433483839035034 0.999536712156291 hm5C_site_6583 DeepMRMD:0.433483839035034;iRNA_m5C:0.999536712156291 6584 chr1 222638418 222638418 1 + C T rs189143488 222638402 + 222638382 222638422 41 TAAACCAGGGGTCGCGAGTTCGATCCTCGCTGGGGCCTCCT TAAACCAGGGGTCGCGAGTTCGATCCTCGCTGGGGCTTCCT < 41bp 1 0.169975897310016 1 0.14376974105835 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01655;HHIPL2 ENSG00000226643;ENSG00000234419 intergenic Human other chr1:222638402 chr1:222638418 . . 0 37 hm5C_associated_SNPs_3423 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6584 DeepMRMD:1;iRNA_m5C:0.999536712157815 6585 chr1 222638418 222638418 1 + C T rs189143488 222638407 + 222638387 222638427 41 CAGGGGTCGCGAGTTCGATCCTCGCTGGGGCCTCCTGTTGG CAGGGGTCGCGAGTTCGATCCTCGCTGGGGCTTCCTGTTGG < 41bp 1 0.413163004419977 1 0.692915141582489 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01655;HHIPL2 ENSG00000226643;ENSG00000234419 intergenic Human other chr1:222638407 chr1:222638418 . . 0 32 hm5C_associated_SNPs_3424 0 0 1 0 0 unknown 1 0.50023164392109 0.614169716835022 0.99953671215782 hm5C_site_6585 DeepMRMD:0.614169716835022;iRNA_m5C:0.99953671215782 Systolic blood pressure 6586 chr1 222638418 222638418 1 + C T rs189143488 222638409 + 222638389 222638429 41 GGGGTCGCGAGTTCGATCCTCGCTGGGGCCTCCTGTTGGCT GGGGTCGCGAGTTCGATCCTCGCTGGGGCTTCCTGTTGGCT < 41bp 1 0.237905479355288 1 0.150993853807449 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01655;HHIPL2 ENSG00000226643;ENSG00000234419 intergenic Human other chr1:222638409 chr1:222638418 . . 0 30 hm5C_associated_SNPs_3425 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157811 hm5C_site_6586 DeepMRMD:1;iRNA_m5C:0.999536712157811 6587 chr1 222638418 222638418 1 + C T rs189143488 222638417 + 222638397 222638437 41 GAGTTCGATCCTCGCTGGGGCCTCCTGTTGGCTTACTTTTA GAGTTCGATCCTCGCTGGGGCTTCCTGTTGGCTTACTTTTA < 41bp 1 0.0248660085891816 1 0.0633037388324738 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01655;HHIPL2 ENSG00000226643;ENSG00000234419 intergenic Human other chr1:222638417 chr1:222638418 . . 0 22 hm5C_associated_SNPs_3426 0 0 1 0 0 unknown 1 0.500231643921104 1 0.999536712157792 hm5C_site_6587 DeepMRMD:1;iRNA_m5C:0.999536712157792 6588 chr1 222817670 222817670 1 + C T rs61824281 222817682 + 222817662 222817702 41 GCATAAAGCGAAAGTGCAGGCAGCTGTGGAAGGCGAAGTTC GCATAAAGTGAAAGTGCAGGCAGCTGTGGAAGGCGAAGTTC < 41bp 1 0.646854252843923 1 0.344385981559753 experiment 0.706291494312155 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MIA3 ENSG00000154305 UTR5 Human protein_coding chr1:222817682 chr1:222817670 . . 0 9 hm5C_associated_SNPs_3427 0 0 0 0 0 Endoplasmic reticulum 1 0.500231344538621 1 0.999537310922759 hm5C_site_6588 DeepMRMD:1;iRNA_m5C:0.999537310922759 6589 chr1 222817670 222817670 1 + C T rs61824281 222817685 + 222817665 222817705 41 TAAAGCGAAAGTGCAGGCAGCTGTGGAAGGCGAAGTTCAAT TAAAGTGAAAGTGCAGGCAGCTGTGGAAGGCGAAGTTCAAT < 41bp 1 0.290990099090233 1 0.429467290639877 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MIA3 ENSG00000154305 UTR5 Human protein_coding chr1:222817685 chr1:222817670 . . 0 6 hm5C_associated_SNPs_3428 0 0 0 0 0 Endoplasmic reticulum 1 0.500231637273219 1 0.999536725453563 hm5C_site_6589 DeepMRMD:1;iRNA_m5C:0.999536725453563 6590 chr1 222833538 222833538 1 + C G rs2291835 222833549 + 222833529 222833569 41 CCAGAATGGCTCTTTTGGCCCATCCCCTGTGAGTGGTGGAG CCAGAATGGGTCTTTTGGCCCATCCCCTGTGAGTGGTGGAG < 41bp 1 0.103827430623094 1 0.0965434014797211 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222833549 chr1:222833538 synonymous SNV . 0 10 hm5C_associated_SNPs_3429 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_6590 DeepMRMD:1;iRNA_m5C:0.999536712157815 6591 chr1 222898824 222898824 1 + G A rs17163847 222898817 + 222898797 222898837 41 TCATCTCCCAAAACTCATTACACCTGCGGAAAAAGGAAGAG TCATCTCCCAAAACTCATTACACCTGCAGAAAAAGGAAGAG < 41bp 1 0.329788678125669 1 0.204894453287125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BROX ENSG00000162819 CDS Human protein_coding chr1:222898817 chr1:222898824 synonymous SNV . 0 28 hm5C_associated_SNPs_3430 0 0 1 0 2 cytosol 1 0.500231643917208 1 0.999536712165584 hm5C_site_6591 DeepMRMD:1;iRNA_m5C:0.999536712165584 6592 chr1 222906700 222906700 1 + G A rs537095733 222906680 + 222906660 222906700 41 TGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAG TGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAA < 41bp 1 0.201767743077978 1 0.172025710344315 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BROX ENSG00000162819 UTR3 Human protein_coding chr1:222906680 chr1:222906700 . . 0 41 hm5C_associated_SNPs_3431 0 0 1 0 0 cytosol 1 0.50023164392977 1 0.99953671214046 hm5C_site_6592 DeepMRMD:1;iRNA_m5C:0.99953671214046 6593 chr1 222906700 222906700 1 + G A rs537095733 222906681 + 222906661 222906701 41 GATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGG GATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAAG < 41bp 1 0.211529276010074 1 0.237258672714233 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BROX ENSG00000162819 UTR3 Human protein_coding chr1:222906681 chr1:222906700 . . 0 40 hm5C_associated_SNPs_3432 0 0 1 0 0 cytosol 1 0.50023164392223 1 0.99953671215554 hm5C_site_6593 DeepMRMD:1;iRNA_m5C:0.99953671215554 6594 chr1 222906700 222906700 1 + G A rs537095733 222906682 + 222906662 222906702 41 ATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGC ATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAAGC < 41bp 1 0.373299554154244 1 0.383284270763397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BROX ENSG00000162819 UTR3 Human protein_coding chr1:222906682 chr1:222906700 . . 0 39 hm5C_associated_SNPs_3433 0 0 1 0 0 cytosol 1 0.500231643992417 1 0.999536712015166 hm5C_site_6594 DeepMRMD:1;iRNA_m5C:0.999536712015166 6595 chr1 223900486 223900486 1 + C T rs28370008 223900495 + 223900475 223900515 41 CTCTTCCAGGACCCGTCCTTCCCGGCCATCCCCTCGGCCCT CTCTTCCAGGATCCGTCCTTCCCGGCCATCCCCTCGGCCCT < 41bp 1 0.5100061040879 1 0.174251556396484 experiment 0.979987791824199 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223900495 chr1:223900486 synonymous SNV . 0 12 hm5C_associated_SNPs_3434 0 0 1 0 1 Ribosome 1 0.500231643921526 1 0.999536712156948 hm5C_site_6595 DeepMRMD:1;iRNA_m5C:0.999536712156948 6596 chr1 223900511 223900511 1 + G A rs146572729 223900495 + 223900475 223900515 41 CTCTTCCAGGACCCGTCCTTCCCGGCCATCCCCTCGGCCCT CTCTTCCAGGACCCGTCCTTCCCGGCCATCCCCTCGACCCT < 41bp 1 0.516335528571734 1 0.139478385448456 experiment 0.967328942856532 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223900495 chr1:223900511 nonsynonymous SNV 0.077 1 37 hm5C_associated_SNPs_3435 0 0 1 0 1 Ribosome 1 0.500231667461951 1 0.999536665076098 hm5C_site_6596 DeepMRMD:1;iRNA_m5C:0.999536665076098 6597 chr1 223934720 223934720 1 + G A rs17600 223934721 + 223934701 223934741 41 TCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT TCAACGGATGCTATGAAGCACTATCAGGGGGTGCCACCACT < 41bp 1 0.0766832183815273 1 0.0456267297267914 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934721 chr1:223934720 synonymous SNV . 0 20 hm5C_associated_SNPs_3437 0 0 1 0 1 Ribosome 1 0.500231643861279 1 0.999536712277443 hm5C_site_6597 DeepMRMD:1;iRNA_m5C:0.999536712277443 6598 chr1 223946089 223946089 1 + G T rs28370108 223946102 + 223946082 223946122 41 ACATCGGGCTCTTTTAGATGCTGCTCCAGCCTTGGTCCGGT ACATCGGTCTCTTTTAGATGCTGCTCCAGCCTTGGTCCGGT < 41bp 1 0.241325765008631 1 0.291108667850494 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAPN2 ENSG00000162909 intronic Human protein_coding chr1:223946102 chr1:223946089 . . 0 8 hm5C_associated_SNPs_3438 0 0 1 0 0 Ribosome 1 0.500231643914966 1 0.999536712170069 hm5C_site_6598 DeepMRMD:1;iRNA_m5C:0.999536712170069 6599 chr1 224553693 224553693 1 + G A rs183720647 224553676 + 224553656 224553696 41 CTTCTCAACTTACCTGTTGCCACTTGGAATATATATCGGTG CTTCTCAACTTACCTGTTGCCACTTGGAATATATATCAGTG < 41bp 1 0.290113406082832 1 0.42575141787529 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNIH4 ENSG00000143771 CDS Human protein_coding chr1:224553676 chr1:224553693 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_3440 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643908268 1 0.999536712183464 hm5C_site_6599 DeepMRMD:1;iRNA_m5C:0.999536712183464 6600 chr1 225965605 225965605 1 + A G rs150506040 225965618 + 225965598 225965638 41 GGTTCTGAGGCCTTGCTTCTCTTTACTTTTCCACTCTAGGC GGTTCTGGGGCCTTGCTTCTCTTTACTTTTCCACTCTAGGC < 41bp 1 0.583403698934613 1 0.38734096288681 experiment 0.833192602130774 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SRP9 ENSG00000143742 UTR5 Human protein_coding chr1:225965618 chr1:225965605 . . 0 8 hm5C_associated_SNPs_3441 0 0 0 0 0 Ribosome 1 0.500231643935357 1 0.999536712129286 hm5C_site_6600 DeepMRMD:1;iRNA_m5C:0.999536712129286 6601 chr1 227171802 227171802 1 + C T rs200375779 227171811 + 227171791 227171831 41 CCAGGGACCTGCTGAAGGGCCACCCCTTCTTCTATGTGCCT CCAGGGACCTGTTGAAGGGCCACCCCTTCTTCTATGTGCCT < 41bp 1 0.17055400089939 1 0.0789862275123596 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171811 chr1:227171802 synonymous SNV . 0 12 hm5C_associated_SNPs_3443 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6601 DeepMRMD:1;iRNA_m5C:0.999536712157815 6602 chr1 227751266 227751266 1 + G C rs117098396 227751281 + 227751261 227751301 41 GTCTTGTGCTCCAGCTGGAGCTTTGGTCCCGTATTCTCGGC GTCTTCTGCTCCAGCTGGAGCTTTGGTCCCGTATTCTCGGC < 41bp 1 0.313252783945 1 0.0651430487632751 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF678 ENSG00000181450 UTR5 Human protein_coding chr1:227751281 chr1:227751266 . . 0 6 hm5C_associated_SNPs_3444 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_6602 DeepMRMD:1;iRNA_m5C:0.999536712157814 6603 chr1 227968671 227968671 1 + G A rs146464689 227968654 + 227968634 227968674 41 GACCCCAAGGACACTTGGCACAGGCCTGGAAGAGGCCGCCC GACCCCAAGGACACTTGGCACAGGCCTGGAAGAGGCCACCC < 41bp 1 0.677932395534343 1 0.385085582733154 experiment 0.644135208931315 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNAP47 ENSG00000143740 UTR3 Human protein_coding chr1:227968654 chr1:227968671 . . 0 38 hm5C_associated_SNPs_3445 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6603 DeepMRMD:1;iRNA_m5C:0.999536712157815 6604 chr1 227968673 227968673 1 + C T rs568444232 227968654 + 227968634 227968674 41 GACCCCAAGGACACTTGGCACAGGCCTGGAAGAGGCCGCCC GACCCCAAGGACACTTGGCACAGGCCTGGAAGAGGCCGCTC < 41bp 1 0.691682162909749 1 0.229640334844589 experiment 0.616635674180502 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNAP47 ENSG00000143740 UTR3 Human protein_coding chr1:227968654 chr1:227968673 . . 0 40 hm5C_associated_SNPs_3446 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6604 DeepMRMD:1;iRNA_m5C:0.999536712157815 6605 chr1 228286085 228286085 1 + T C rs189047528 228286105 + 228286085 228286125 41 TTTTGGTGGTTGGTTTTTAACCCAAACTCAGTGCATTTTTT CTTTGGTGGTTGGTTTTTAACCCAAACTCAGTGCATTTTTT < 41bp 1 0.403950133650199 1 0.242993474006653 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARF1 ENSG00000143761 UTR3 Human protein_coding chr1:228286105 chr1:228286085 . . 0 1 hm5C_associated_SNPs_3447 0 0 1 0 0 Cytosol 1 0.50023164392134 1 0.99953671215732 hm5C_site_6605 DeepMRMD:1;iRNA_m5C:0.99953671215732 6606 chr1 228286628 228286628 1 + C G rs187703170 228286618 + 228286598 228286638 41 GACCCACAGCCCCTCGGGAGCACCCCACCTCTGTGTGTGAT GACCCACAGCCCCTCGGGAGCACCCCACCTGTGTGTGTGAT < 41bp 1 0.311708779186932 1 0.439624518156052 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARF1 ENSG00000143761 UTR3 Human protein_coding chr1:228286618 chr1:228286628 . . 0 31 hm5C_associated_SNPs_3449 0 0 1 3 0 Cytosol 1 0.500231643851058 1 0.999536712297884 hm5C_site_6606 DeepMRMD:1;iRNA_m5C:0.999536712297884 6607 chr1 228286881 228286881 1 + T C rs149161835 228286870 + 228286850 228286890 41 TTTTCATTTCGACAAACAAGCACTGTAATTATAGCTATTAG TTTTCATTTCGACAAACAAGCACTGTAATTACAGCTATTAG < 41bp 1 0.30007711837324 1 0.112322390079498 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARF1 ENSG00000143761 UTR3 Human protein_coding chr1:228286870 chr1:228286881 . . 0 32 hm5C_associated_SNPs_3450 0 0 1 4 0 Cytosol 1 0.50023586100765 1 0.999528277984699 hm5C_site_6607 DeepMRMD:1;iRNA_m5C:0.999528277984699 6608 chr1 228333240 228333240 1 + G A rs141117528 228333247 + 228333227 228333267 41 GGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAAGAGC GGCCTGTGGTGCTAAGCGGGCCTTCGGGAGCTGGGAAGAGC < 41bp 1 0.0342605773977053 1 0.0995963513851166 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333247 chr1:228333240 nonsynonymous SNV 0.713 0 14 hm5C_associated_SNPs_3452 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_6608 DeepMRMD:1;iRNA_m5C:0.999536712157815 6609 chr1 228333701 228333701 1 + C A rs199710311 228333718 + 228333698 228333738 41 CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCACGAGGA CCCAGATGGGTGACAGGTCTCTCTGCTAGATACCACGAGGA < 41bp 1 0.595431577216636 1 0.123850166797638 experiment 0.809136845566728 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GUK1 ENSG00000143774 intronic Human protein_coding chr1:228333718 chr1:228333701 . . 0 4 hm5C_associated_SNPs_3453 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643541099 1 0.999536712917802 hm5C_site_6609 DeepMRMD:1;iRNA_m5C:0.999536712917802 6610 chr1 228362682 228362682 1 + G A rs2298014 228362665 + 228362645 228362685 41 CCTCACCCAGGATGAAGGCCCAGCCCTGGTGCCCGGGGGCC CCTCACCCAGGATGAAGGCCCAGCCCTGGTGCCCGGGAGCC < 41bp 1 0.479413574450011 1 0.263744354248047 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IBA57 ENSG00000181873 CDS Human protein_coding chr1:228362665 chr1:228362682 nonsynonymous SNV 0.002 0 38 hm5C_associated_SNPs_3454 1 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6610 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 6611 chr1 228459670 228459670 1 + G C rs115028988 228459666 + 228459646 228459686 41 AAGGAGCAGGTGGTGTTTGCCAAGGATCAGCCGGTGCACAG AAGGAGCAGGTGGTGTTTGCCAAGCATCAGCCGGTGCACAG < 41bp 1 0.143430804400969 1 0.77953714132309 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228459666 chr1:228459670 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_3455 0 0 1 0 1 Ribosome 1 0.500231643921261 0.44092571735382 0.999536712157478 hm5C_site_6611 DeepMRMD:0.44092571735382;iRNA_m5C:0.999536712157478 6612 chr1 228459677 228459677 1 + C T rs117651701 228459666 + 228459646 228459686 41 AAGGAGCAGGTGGTGTTTGCCAAGGATCAGCCGGTGCACAG AAGGAGCAGGTGGTGTTTGCCAAGGATCAGCTGGTGCACAG < 41bp 1 0.264942228231389 1 0.883443713188171 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228459666 chr1:228459677 nonsynonymous SNV 0.002 0 32 hm5C_associated_SNPs_3456 0 0 1 0 1 Ribosome 1 0.500231706853065 0.233112573623658 0.999536586293871 hm5C_site_6612 DeepMRMD:0.233112573623658;iRNA_m5C:0.999536586293871 6613 chr1 228470918 228470918 1 + C T rs114058903 228470936 + 228470916 228470956 41 CTCAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC CTTAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC < 41bp 1 0.215545669477118 1 0.428753852844238 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228470936 chr1:228470918 synonymous SNV . 0 3 hm5C_associated_SNPs_3457 0 0 0 0 1 Ribosome 1 0.500231643921095 1 0.999536712157811 hm5C_site_6613 DeepMRMD:1;iRNA_m5C:0.999536712157811 6614 chr1 228496014 228496014 1 + G A rs876180 228496008 + 228495988 228496028 41 CACACCCTGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGG CACACCCTGCGGCTGAAGGGCGTGACACCCGAGGACGCTGG < 41bp 1 0.102838407749382 1 0.523855149745941 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496008 chr1:228496014 synonymous SNV . 0 27 hm5C_associated_SNPs_3458 0 0 0 0 1 Ribosome 1 0.500231639060443 0.952289700508118 0.999536721879114 hm5C_site_6614 DeepMRMD:0.952289700508118;iRNA_m5C:0.999536721879114 6615 chr1 228496014 228496014 1 + G A rs876180 228496015 + 228495995 228496035 41 TGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC TGCGGCTGAAGGGCGTGACACCCGAGGACGCTGGCACTGTC < 41bp 1 0.181064693810275 1 0.703297078609467 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496015 chr1:228496014 synonymous SNV . 0 20 hm5C_associated_SNPs_3459 0 0 0 0 1 Ribosome 1 0.500231640277719 0.593405842781066 0.999536719444562 hm5C_site_6615 DeepMRMD:0.593405842781066;iRNA_m5C:0.999536719444562 6616 chr1 228496014 228496014 1 + G A rs876180 228496016 + 228495996 228496036 41 GCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT GCGGCTGAAGGGCGTGACACCCGAGGACGCTGGCACTGTCT < 41bp 1 0.0869988240652658 1 0.546299159526825 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496016 chr1:228496014 synonymous SNV . 0 19 hm5C_associated_SNPs_3460 0 0 0 0 1 Ribosome 1 0.500231653469032 0.90740168094635 0.999536693061935 hm5C_site_6616 DeepMRMD:0.90740168094635;iRNA_m5C:0.999536693061935 6617 chr1 228496014 228496014 1 + G A rs876180 228496017 + 228495997 228496037 41 CGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC CGGCTGAAGGGCGTGACACCCGAGGACGCTGGCACTGTCTC < 41bp 1 0.257989680565207 1 0.902024984359741 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496017 chr1:228496014 synonymous SNV . 0 18 hm5C_associated_SNPs_3461 0 0 0 0 1 Ribosome 1 0.500231645040517 0.195950031280518 0.999536709918967 hm5C_site_6617 DeepMRMD:0.195950031280518;iRNA_m5C:0.999536709918967 6618 chr1 228496018 228496018 1 + G A rs375491688 228496008 + 228495988 228496028 41 CACACCCTGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGG CACACCCTGCGGCTGAAGGGCGTGACGCCCAAGGACGCTGG < 41bp 1 0.107563398815063 1 0.576729238033295 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496008 chr1:228496018 nonsynonymous SNV 0.098 2 31 hm5C_associated_SNPs_3462 0 0 0 0 1 Ribosome 1 0.500231643920812 0.84654152393341 0.999536712158375 hm5C_site_6618 DeepMRMD:0.84654152393341;iRNA_m5C:0.999536712158375 6619 chr1 228496018 228496018 1 + G A rs375491688 228496015 + 228495995 228496035 41 TGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC TGCGGCTGAAGGGCGTGACGCCCAAGGACGCTGGCACTGTC < 41bp 1 0.103161707552116 1 0.497593343257904 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496015 chr1:228496018 nonsynonymous SNV 0.098 2 24 hm5C_associated_SNPs_3463 0 0 0 0 1 Ribosome 1 0.50023164392129 1 0.999536712157421 hm5C_site_6619 DeepMRMD:1;iRNA_m5C:0.999536712157421 6620 chr1 228496018 228496018 1 + G A rs375491688 228496016 + 228495996 228496036 41 GCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT GCGGCTGAAGGGCGTGACGCCCAAGGACGCTGGCACTGTCT < 41bp 1 0.0543201648845817 1 0.274348497390747 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496016 chr1:228496018 nonsynonymous SNV 0.098 2 23 hm5C_associated_SNPs_3464 0 0 0 0 1 Ribosome 1 0.500231643973371 1 0.999536712053259 hm5C_site_6620 DeepMRMD:1;iRNA_m5C:0.999536712053259 6621 chr1 228496018 228496018 1 + G A rs375491688 228496017 + 228495997 228496037 41 CGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC CGGCTGAAGGGCGTGACGCCCAAGGACGCTGGCACTGTCTC < 41bp 1 0.206726164527887 1 0.877441048622131 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496017 chr1:228496018 nonsynonymous SNV 0.098 2 22 hm5C_associated_SNPs_3465 0 0 0 0 1 Ribosome 1 0.500231653554821 0.245117902755738 0.999536692890359 hm5C_site_6621 DeepMRMD:0.245117902755738;iRNA_m5C:0.999536692890359 6622 chr1 228526011 228526011 1 + C T rs11577699 228526010 + 228525990 228526030 41 GCTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCC GCTGTCACCTGAGTGGGGGGCTGCTGAGGCCCCTGAGTTCC < 41bp 1 0.0841256515700373 1 0.406694710254669 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526010 chr1:228526011 synonymous SNV . 0 22 hm5C_associated_SNPs_3466 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6622 DeepMRMD:1;iRNA_m5C:0.999536712157815 6623 chr1 228526011 228526011 1 + C T rs11577699 228526019 + 228525999 228526039 41 TGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGG TGAGTGGGGGGCTGCTGAGGCCCCTGAGTTCCCTGGGGAGG < 41bp 1 0.0602666838566509 1 0.243758320808411 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526019 chr1:228526011 synonymous SNV . 0 13 hm5C_associated_SNPs_3467 0 0 0 0 2 Ribosome 1 0.500231643921282 1 0.999536712157436 hm5C_site_6623 DeepMRMD:1;iRNA_m5C:0.999536712157436 6624 chr1 228526011 228526011 1 + C T rs11577699 228526020 + 228526000 228526040 41 GAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGC GAGTGGGGGGCTGCTGAGGCCCCTGAGTTCCCTGGGGAGGC < 41bp 1 0.074315404620871 1 0.207011222839355 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526020 chr1:228526011 synonymous SNV . 0 12 hm5C_associated_SNPs_3468 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6624 DeepMRMD:1;iRNA_m5C:0.999536712157815 6625 chr1 228526011 228526011 1 + C T rs11577699 228526021 + 228526001 228526041 41 AGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCT AGTGGGGGGCTGCTGAGGCCCCTGAGTTCCCTGGGGAGGCT < 41bp 1 0.10676031726568 1 0.323525667190552 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526021 chr1:228526011 synonymous SNV . 0 11 hm5C_associated_SNPs_3469 0 0 0 0 2 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_6625 DeepMRMD:1;iRNA_m5C:0.999536712157817 6626 chr1 228526011 228526011 1 + C T rs11577699 228526022 + 228526002 228526042 41 GTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCTG GTGGGGGGCTGCTGAGGCCCCTGAGTTCCCTGGGGAGGCTG < 41bp 1 0.197009494725354 1 0.406018555164337 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526022 chr1:228526011 synonymous SNV . 0 10 hm5C_associated_SNPs_3470 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6626 DeepMRMD:1;iRNA_m5C:0.999536712157815 6627 chr1 228566473 228566473 1 + C T rs540744111 228566484 + 228566464 228566504 41 TACAAGAGGCACAACCTGGCCCAGGTGCGCTGAGGGTCGCC TACAAGAGGTACAACCTGGCCCAGGTGCGCTGAGGGTCGCC < 41bp 1 0.113760129113319 1 0.667395055294037 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228566484 chr1:228566473 nonsynonymous SNV 0.539 0 10 hm5C_associated_SNPs_3471 0 0 0 0 0 Ribosome 1 0.500231643921093 0.665209889411926 0.999536712157814 hm5C_site_6627 DeepMRMD:0.665209889411926;iRNA_m5C:0.999536712157814 6628 chr1 228881762 228881762 1 + G A rs114875384 228881764 + 228881744 228881784 41 GTGAAGTACACCTGTGTGGCCCAGTTCTGAAAGCTTTATAC GTGAAGTACACCTGTGTGACCCAGTTCTGAAAGCTTTATAC < 41bp 1 0.367651546181124 1 0.180224925279617 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RHOU ENSG00000116574 UTR3 Human protein_coding chr1:228881764 chr1:228881762 . . 0 19 hm5C_associated_SNPs_3472 0 0 1 1 0 Ribosome 1 0.500231645666167 1 0.999536708667666 hm5C_site_6628 DeepMRMD:1;iRNA_m5C:0.999536708667666 6629 chr1 229439639 229439639 1 + T A rs15452 229439650 + 229439630 229439670 41 TACTCTGTATGGAAGTAGATCTTTATGGGGAAAAGAGAATT TACTCTGTAAGGAAGTAGATCTTTATGGGGAAAAGAGAATT < 41bp 1 0.287372397765876 1 0.177530407905579 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB4A ENSG00000168118 UTR3 Human protein_coding chr1:229439650 chr1:229439639 . . 0 10 hm5C_associated_SNPs_3473 0 0 1 0 1 Ribosome 1 0.500231643921064 1 0.999536712157871 hm5C_site_6629 DeepMRMD:1;iRNA_m5C:0.999536712157871 6630 chr1 230384970 230384970 1 + G A rs1923950 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTACATGACACCTGAGCAGAGAAGGTCCC < 41bp 1 0.468745887120695 1 0.207816541194916 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384970 synonymous SNV . 0 22 hm5C_associated_SNPs_3474 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644024306 1 0.999536711951387 hm5C_site_6630 DeepMRMD:1;iRNA_m5C:0.999536711951387 6631 chr1 230384970 230384970 1 + G A rs1923950 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTACATGACACCTGAGCAGAGAAGGTCCCGG < 41bp 1 0.317546378059145 1 0.0672382414340973 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384970 synonymous SNV . 0 20 hm5C_associated_SNPs_3475 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921121 1 0.999536712157758 hm5C_site_6631 DeepMRMD:1;iRNA_m5C:0.999536712157758 6632 chr1 230415579 230415579 1 + G T rs535163452 230415580 + 230415560 230415600 41 GACAGGGCGGGAGGAGGGGGCACACATGCCCCAGGGGAGCG GACAGGGCGGGAGGAGGGGTCACACATGCCCCAGGGGAGCG < 41bp 1 0.363888216390379 1 0.340076386928558 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GALNT2 ENSG00000143641 UTR3 Human protein_coding chr1:230415580 chr1:230415579 . . 0 20 hm5C_associated_SNPs_3476 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921015 1 0.99953671215797 hm5C_site_6632 DeepMRMD:1;iRNA_m5C:0.99953671215797 6633 chr1 230415593 230415593 1 + G A rs15273 230415580 + 230415560 230415600 41 GACAGGGCGGGAGGAGGGGGCACACATGCCCCAGGGGAGCG GACAGGGCGGGAGGAGGGGGCACACATGCCCCAAGGGAGCG < 41bp 1 0.289058055551086 1 0.336239904165268 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GALNT2 ENSG00000143641 UTR3 Human protein_coding chr1:230415580 chr1:230415593 . . 0 34 hm5C_associated_SNPs_3477 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_6633 DeepMRMD:1;iRNA_m5C:0.999536712157815 6634 chr1 231135910 231135910 1 + A G rs189216908 231135914 + 231135894 231135934 41 CTTCACTATCTGTGGCATGACCAGCTGTATCTGAAAGAGAA CTTCACTATCTGTGGCGTGACCAGCTGTATCTGAAAGAGAA < 41bp 1 0.281213372105089 1 0.241216123104095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARV1 ENSG00000173409 UTR3 Human protein_coding chr1:231135914 chr1:231135910 . . 0 17 hm5C_associated_SNPs_3478 0 0 1 0 1 Endoplasmic reticulum 1 0.500232377155738 1 0.999535245688524 hm5C_site_6634 DeepMRMD:1;iRNA_m5C:0.999535245688524 6635 chr1 231135910 231135910 1 + A G rs189216908 231135915 + 231135895 231135935 41 TTCACTATCTGTGGCATGACCAGCTGTATCTGAAAGAGAAA TTCACTATCTGTGGCGTGACCAGCTGTATCTGAAAGAGAAA < 41bp 1 0.698156919574292 1 0.459951639175415 experiment 0.603686160851415 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARV1 ENSG00000173409 UTR3 Human protein_coding chr1:231135915 chr1:231135910 . . 0 16 hm5C_associated_SNPs_3479 0 0 1 0 1 Endoplasmic reticulum 1 0.500232008089109 1 0.999535983821781 hm5C_site_6635 DeepMRMD:1;iRNA_m5C:0.999535983821781 6636 chr1 231376972 231376972 1 + A C rs537119013 231376979 + 231376959 231376999 41 CGTCCTGGCTGAGATGGCGGCGCCCGGGATCCTGTGTAGCG CGTCCTGGCTGAGCTGGCGGCGCCCGGGATCCTGTGTAGCG < 41bp 1 0.68168757093097 1 0.367930114269257 experiment 0.636624858138061 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control GNPAT ENSG00000116906 UTR5 Human protein_coding chr1:231376979 chr1:231376972 . . 0 14 hm5C_associated_SNPs_3480 0 0 1 0 0 Cytosol 1 0.500231643921353 1 0.999536712157294 hm5C_site_6636 DeepMRMD:1;iRNA_m5C:0.999536712157294 6637 chr1 231376980 231376980 1 + G A rs113752547 231376979 + 231376959 231376999 41 CGTCCTGGCTGAGATGGCGGCGCCCGGGATCCTGTGTAGCG CGTCCTGGCTGAGATGGCGGCACCCGGGATCCTGTGTAGCG < 41bp 1 0.5909077331989 1 0.187961131334305 experiment 0.8181845336022 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control GNPAT ENSG00000116906 UTR5 Human protein_coding chr1:231376979 chr1:231376980 . . 0 22 hm5C_associated_SNPs_3482 1 0 1 0 0 Cytosol 1 0.500231643924462 1 0.999536712151075 hm5C_site_6637 DeepMRMD:1;iRNA_m5C:0.999536712151075 Rhizomelic chondrodysplasia punctata Rhizomelic chondrodysplasia punctata 6638 chr1 231376989 231376989 1 + C T rs546114860 231376979 + 231376959 231376999 41 CGTCCTGGCTGAGATGGCGGCGCCCGGGATCCTGTGTAGCG CGTCCTGGCTGAGATGGCGGCGCCCGGGATTCTGTGTAGCG < 41bp 1 0.59305921720201 1 0.262959897518158 experiment 0.81388156559598 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control GNPAT ENSG00000116906 UTR5 Human protein_coding chr1:231376979 chr1:231376989 . . 0 31 hm5C_associated_SNPs_3484 0 0 1 0 0 Cytosol 1 0.500231643921372 1 0.999536712157256 hm5C_site_6638 DeepMRMD:1;iRNA_m5C:0.999536712157256 6639 chr1 231377004 231377004 1 + C A rs573141457 231377013 + 231376993 231377033 41 TGTAGCGGCTGCAGAGGGTGCCGCCGCCCTAGGCGAAGTAG TGTAGCGGCTGAAGAGGGTGCCGCCGCCCTAGGCGAAGTAG < 41bp 1 0.42509671522741 1 0.281031847000122 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GNPAT ENSG00000116906 UTR5 Human protein_coding chr1:231377013 chr1:231377004 . . 0 12 hm5C_associated_SNPs_3486 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6639 DeepMRMD:1;iRNA_m5C:0.999536712157815 6640 chr1 231377004 231377004 1 + C A rs573141457 231377014 + 231376994 231377034 41 GTAGCGGCTGCAGAGGGTGCCGCCGCCCTAGGCGAAGTAGG GTAGCGGCTGAAGAGGGTGCCGCCGCCCTAGGCGAAGTAGG < 41bp 1 0.681614155053096 1 0.680119633674622 experiment 0.636771689893808 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 UTR5 Human protein_coding chr1:231377014 chr1:231377004 . . 0 11 hm5C_associated_SNPs_3487 0 0 1 0 0 Cytosol 1 0.500231643911596 0.639760732650756 0.999536712176808 hm5C_site_6640 DeepMRMD:0.639760732650756;iRNA_m5C:0.999536712176808 6641 chr1 231377004 231377004 1 + C A rs573141457 231377016 + 231376996 231377036 41 AGCGGCTGCAGAGGGTGCCGCCGCCCTAGGCGAAGTAGGGC AGCGGCTGAAGAGGGTGCCGCCGCCCTAGGCGAAGTAGGGC < 41bp 1 0.339629547427872 1 0.433719575405121 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GNPAT ENSG00000116906 UTR5 Human protein_coding chr1:231377016 chr1:231377004 . . 0 9 hm5C_associated_SNPs_3488 0 0 1 0 0 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_6641 DeepMRMD:1;iRNA_m5C:0.99953671215782 6642 chr1 231377004 231377004 1 + C A rs573141457 231377017 + 231376997 231377037 41 GCGGCTGCAGAGGGTGCCGCCGCCCTAGGCGAAGTAGGGCC GCGGCTGAAGAGGGTGCCGCCGCCCTAGGCGAAGTAGGGCC < 41bp 1 0.699048625286052 1 0.710739612579346 experiment 0.601902749427897 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GNPAT ENSG00000116906 UTR5 Human protein_coding chr1:231377017 chr1:231377004 . . 0 8 hm5C_associated_SNPs_3489 0 0 1 0 0 Cytosol 1 0.500231643921092 0.578520774841308 0.999536712157815 hm5C_site_6642 DeepMRMD:0.578520774841308;iRNA_m5C:0.999536712157815 6643 chr1 231377037 231377037 1 + C A rs529367950 231377017 + 231376997 231377037 41 GCGGCTGCAGAGGGTGCCGCCGCCCTAGGCGAAGTAGGGCC GCGGCTGCAGAGGGTGCCGCCGCCCTAGGCGAAGTAGGGCA < 41bp 1 0.672353997699311 1 0.649278223514557 experiment 0.655292004601378 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GNPAT ENSG00000116906 UTR5 Human protein_coding chr1:231377017 chr1:231377037 . . 0 41 hm5C_associated_SNPs_3490 0 0 1 0 0 Cytosol 1 0.500231643921092 0.701443552970886 0.999536712157815 hm5C_site_6643 DeepMRMD:0.701443552970886;iRNA_m5C:0.999536712157815 6644 chr1 231413306 231413306 1 + T C rs150776112 231413315 + 231413295 231413335 41 ACAAATAGTTATGGAAAATTCGGTCACGTAATTACTCTCAT ACAAATAGTTACGGAAAATTCGGTCACGTAATTACTCTCAT < 41bp 1 0.598923210645109 1 0.438599139451981 experiment 0.802153578709783 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNPAT ENSG00000116906 UTR3 Human protein_coding chr1:231413315 chr1:231413306 . . 0 12 hm5C_associated_SNPs_3491 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6644 DeepMRMD:1;iRNA_m5C:0.999536712157815 6645 chr1 233489682 233489682 1 + G A rs56268427 233489675 + 233489655 233489695 41 GCCCATTCCATCCACCTGCCCTGAGCCGTTTGCCAAGCTCA GCCCATTCCATCCACCTGCCCTGAGCCATTTGCCAAGCTCA < 41bp 1 0.314341619253029 1 0.090310275554657 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233489675 chr1:233489682 synonymous SNV . 0 28 hm5C_associated_SNPs_3492 0 0 1 0 1 unknown 1 0.500231670953455 1 0.99953665809309 hm5C_site_6645 DeepMRMD:1;iRNA_m5C:0.99953665809309 6646 chr1 233514934 233514934 1 + G A rs3795375 233514944 + 233514924 233514964 41 TGGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG TGGGTGCACCATCCTTCTGGCATCGGTGGCTCTGGGACTGG < 41bp 1 0.272390254135124 1 0.0485510528087616 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233514944 chr1:233514934 nonsynonymous SNV 0.000 0 11 hm5C_associated_SNPs_3493 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_6646 DeepMRMD:1;iRNA_m5C:0.999536712157815 6647 chr1 235491903 235491903 1 + C T rs72758083 235491901 + 235491881 235491921 41 GCGCAGTGTGACCGGGATGGCGCATTTTCTTGCACCAACTA GCGCAGTGTGACCGGGATGGCGTATTTTCTTGCACCAACTA < 41bp 1 0.366738908940697 1 0.310750842094421 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GGPS1 ENSG00000152904 UTR5 Human protein_coding chr1:235491901 chr1:235491903 . . 0 23 hm5C_associated_SNPs_3494 0 0 1 0 0 Ribosome 1 0.500196317875273 1 0.999607364249453 hm5C_site_6647 DeepMRMD:1;iRNA_m5C:0.999607364249453 6648 chr1 235577753 235577753 1 + C G rs147489278 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCGGACAGGAGGATCCTTTATTCGTCCGAACAAGG < 41bp 1 0.0170115824520609 1 0.0330307185649872 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577753 nonsynonymous SNV 0.989 4 9 hm5C_associated_SNPs_3495 0 0 1 0 1 chromatin 1 0.500231643921448 1 0.999536712157103 hm5C_site_6648 DeepMRMD:1;iRNA_m5C:0.999536712157103 6649 chr1 235577756 235577756 1 + C A rs144747353 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCCGAAAGGAGGATCCTTTATTCGTCCGAACAAGG < 41bp 1 0.0114852832601086 1 0.0323952436447144 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577756 nonsynonymous SNV 0.994 1 12 hm5C_associated_SNPs_3496 1 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_6649 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 6650 chr1 235577776 235577776 1 + C T rs62620041 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCCGACAGGAGGATCCTTTATTCGTTCGAACAAGG < 41bp 1 0.0156332955647719 1 0.0361113548278809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577776 nonsynonymous SNV 0.666 4 32 hm5C_associated_SNPs_3497 2 0 1 1 1 chromatin 1 0.500231643921971 1 0.999536712156058 hm5C_site_6650 DeepMRMD:1;iRNA_m5C:0.999536712156058 not specified not specified 6651 chr1 235600723 235600723 1 + A G rs35663526 235600742 + 235600722 235600762 41 AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGC AGGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGC < 41bp 1 0.610616063784473 1 0.0738880336284637 experiment 0.778767872431053 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235600742 chr1:235600723 synonymous SNV . 0 2 hm5C_associated_SNPs_3498 1 0 1 0 1 chromatin 1 0.50023161331359 1 0.999536773372821 hm5C_site_6651 DeepMRMD:1;iRNA_m5C:0.999536773372821 Hypoparathyroidism retardation dysmorphism syndrome Hypoparathyroidism retardation dysmorphism syndrome 6652 chr1 235600741 235600741 1 + A G rs6666168 235600742 + 235600722 235600762 41 AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGC AAGCAGAGACGGCGCGACTGCTCATTATCGCCAGCATTGGC < 41bp 1 0.534354715972389 1 0.0630007386207581 experiment 0.931290568055222 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235600742 chr1:235600741 synonymous SNV . 0 20 hm5C_associated_SNPs_3499 1 0 1 0 0 chromatin 1 0.500231637371508 1 0.999536725256983 hm5C_site_6652 DeepMRMD:1;iRNA_m5C:0.999536725256983 Hypoparathyroidism retardation dysmorphism syndrome Hypoparathyroidism retardation dysmorphism syndrome 6653 chr1 235713894 235713894 1 + T G rs112649166 235713902 - 235713882 235713922 41 ACCATGTCGGCCAGGCTGGTCTCCAACTACTGGCCTCGAGT ACCATGTCGGCCAGGCTGGTCTCCAACTCCTGGCCTCGAGT < 41bp 1 0.583460478211207 1 0.9345463514328 experiment 0.833079043577585 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MIR5096 ENSG00000168243 UTR3 Human protein_coding chr1:235713902 chr1:235713894 . . 0 29 hm5C_associated_SNPs_3500 0 0 0 0 0 unknown 1 0.500231643919349 0.1309072971344 0.999536712161302 hm5C_site_6653 DeepMRMD:0.1309072971344;iRNA_m5C:0.999536712161302 6654 chr1 236647736 236647736 1 + C T rs6428955 236647756 + 236647736 236647776 41 CGGCAGGAACTTCAGAAACCCCCCAGCCAAGTAAGCTGTGG TGGCAGGAACTTCAGAAACCCCCCAGCCAAGTAAGCTGTGG < 41bp 1 0.617097391452692 1 0.181532025337219 experiment 0.765805217094616 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDARADD ENSG00000244457 ncRNA_exonic Human transcribed_processed_pseudogene chr1:236647756 chr1:236647736 . . 0 1 hm5C_associated_SNPs_3502 1 0 0 0 0 Nucleus 1 0.500231643920678 1 0.999536712158644 hm5C_site_6654 DeepMRMD:1;iRNA_m5C:0.999536712158644 Hypohidrotic Ectodermal Dysplasia, Recessive Hypohidrotic Ectodermal Dysplasia, Recessive 6655 chr1 237058828 237058828 1 + C G rs1131449 237058834 + 237058814 237058854 41 ACCATGTGGAGACTCGCAGACATCGAGCAGTCTACAGGTAG ACCATGTGGAGACTGGCAGACATCGAGCAGTCTACAGGTAG < 41bp 1 0.296481797268255 1 0.156151533126831 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 CDS Human protein_coding chr1:237058834 chr1:237058828 synonymous SNV . 0 15 hm5C_associated_SNPs_3503 0 0 0 0 1 Nucleus 1 0.500231469548441 1 0.999537060903117 hm5C_site_6655 DeepMRMD:1;iRNA_m5C:0.999537060903117 6656 chr1 237058835 237058835 1 + A G rs149476106 237058834 + 237058814 237058854 41 ACCATGTGGAGACTCGCAGACATCGAGCAGTCTACAGGTAG ACCATGTGGAGACTCGCAGACGTCGAGCAGTCTACAGGTAG < 41bp 1 0.348422452658255 1 0.160982131958008 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 CDS Human protein_coding chr1:237058834 chr1:237058835 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_3504 1 0 0 0 1 Nucleus 1 0.500230587133039 1 0.999538825733923 hm5C_site_6656 DeepMRMD:1;iRNA_m5C:0.999538825733923 Disorders of Intracellular Cobalamin Metabolism Disorders of Intracellular Cobalamin Metabolism 6657 chr1 237062294 237062294 1 + A G rs114316012 237062306 + 237062286 237062326 41 CAATAGTCAGGAGAAGGTAACATTGGAGTCCTGGTTTGATT CAATAGTCGGGAGAAGGTAACATTGGAGTCCTGGTTTGATT < 41bp 1 0.155124817534808 1 0.190806120634079 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 UTR3 Human protein_coding chr1:237062306 chr1:237062294 . . 0 9 hm5C_associated_SNPs_3505 0 0 1 0 0 Nucleus 1 0.500231643921397 1 0.999536712157207 hm5C_site_6657 DeepMRMD:1;iRNA_m5C:0.999536712157207 6658 chr1 237062305 237062305 1 + A G rs1050993 237062306 + 237062286 237062326 41 CAATAGTCAGGAGAAGGTAACATTGGAGTCCTGGTTTGATT CAATAGTCAGGAGAAGGTAGCATTGGAGTCCTGGTTTGATT < 41bp 1 0.122036776663452 1 0.119083851575851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 UTR3 Human protein_coding chr1:237062306 chr1:237062305 . . 0 20 hm5C_associated_SNPs_3506 1 0 1 0 0 Nucleus 1 0.500231643921079 1 0.999536712157842 hm5C_site_6658 DeepMRMD:1;iRNA_m5C:0.999536712157842 Disorders of Intracellular Cobalamin Metabolism Disorders of Intracellular Cobalamin Metabolism 6659 chr1 237062413 237062413 1 + T C rs3768159 237062419 + 237062399 237062439 41 AGATTATAAAGGTATCAGGTCTCCTAAAATTGATCTATGGA AGATTATAAAGGTACCAGGTCTCCTAAAATTGATCTATGGA < 41bp 1 0.0588362326307847 1 0.340748965740204 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTR ENSG00000116984 UTR3 Human protein_coding chr1:237062419 chr1:237062413 . . 0 15 hm5C_associated_SNPs_3507 1 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6659 DeepMRMD:1;iRNA_m5C:0.999536712157815 Disorders of Intracellular Cobalamin Metabolism Disorders of Intracellular Cobalamin Metabolism 6660 chr1 237062432 237062432 1 + T C rs3768160 237062419 + 237062399 237062439 41 AGATTATAAAGGTATCAGGTCTCCTAAAATTGATCTATGGA AGATTATAAAGGTATCAGGTCTCCTAAAATTGACCTATGGA < 41bp 1 0.0576539780810871 1 0.363204151391983 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTR ENSG00000116984 UTR3 Human protein_coding chr1:237062419 chr1:237062432 . . 0 34 hm5C_associated_SNPs_3508 1 0 1 0 0 Nucleus 1 0.500231643971194 1 0.999536712057612 hm5C_site_6660 DeepMRMD:1;iRNA_m5C:0.999536712057612 Disorders of Intracellular Cobalamin Metabolism Disorders of Intracellular Cobalamin Metabolism 6661 chr1 242011534 242011534 1 + A G rs1776178 242011535 + 242011515 242011555 41 CGCGCTGTGTAGGCAAGTTACCCGTGTTCTGCGTTGCCGGC CGCGCTGTGTAGGCAAGTTGCCCGTGTTCTGCGTTGCCGGC < 41bp 1 0.611954896224703 1 0.0573932528495789 experiment 0.776090207550594 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXO1 ENSG00000174371 UTR5 Human protein_coding chr1:242011535 chr1:242011534 . . 0 20 hm5C_associated_SNPs_3509 0 0 1 0 0 Nucleus 1 0.500231779473185 1 0.99953644105363 hm5C_site_6661 DeepMRMD:1;iRNA_m5C:0.99953644105363 6662 chr1 242011534 242011534 1 + A G rs1776178 242011536 + 242011516 242011556 41 GCGCTGTGTAGGCAAGTTACCCGTGTTCTGCGTTGCCGGCC GCGCTGTGTAGGCAAGTTGCCCGTGTTCTGCGTTGCCGGCC < 41bp 1 0.615713079928361 1 0.472620844841003 experiment 0.768573840143279 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXO1 ENSG00000174371 UTR5 Human protein_coding chr1:242011536 chr1:242011534 . . 0 19 hm5C_associated_SNPs_3510 0 0 1 0 0 Nucleus 1 0.500231647672346 1 0.999536704655308 hm5C_site_6662 DeepMRMD:1;iRNA_m5C:0.999536704655308 6663 chr1 242012033 242012033 1 + G A rs1635517 242012034 + 242012014 242012054 41 TTCCCATAATATTTTGCAGGCCTAAGGAAACGTGTCGTCTG TTCCCATAATATTTTGCAGACCTAAGGAAACGTGTCGTCTG < 41bp 1 0.205952312124829 1 0.0850228667259216 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXO1 ENSG00000174371 UTR5 Human protein_coding chr1:242012034 chr1:242012033 . . 0 20 hm5C_associated_SNPs_3511 0 0 1 0 0 Nucleus 1 0.500231643925088 1 0.999536712149824 hm5C_site_6663 DeepMRMD:1;iRNA_m5C:0.999536712149824 6664 chr1 242030151 242030151 1 + A G rs735943 242030150 + 242030130 242030170 41 AGCCTGCCCATTCAAGAAGTCATAGTTGGGATGACAAAACA AGCCTGCCCATTCAAGAAGTCGTAGTTGGGATGACAAAACA < 41bp 1 0.300022302700431 1 0.254491329193115 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242030150 chr1:242030151 nonsynonymous SNV 0.933 0 22 hm5C_associated_SNPs_3512 0 0 1 0 1 Nucleus 1 0.50023166047694 1 0.999536679046121 hm5C_site_6664 DeepMRMD:1;iRNA_m5C:0.999536679046121 6665 chr1 242042437 242042437 1 + G A rs4149978 242042447 + 242042427 242042467 41 CAGCAGTTCCGAAGAAAGAGCGATTCCCCCACCTCTTTGCC CAGCAGTTCCAAAGAAAGAGCGATTCCCCCACCTCTTTGCC < 41bp 1 0.162916114993874 1 0.143148809671402 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242042447 chr1:242042437 nonsynonymous SNV 0.179 0 11 hm5C_associated_SNPs_3513 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6665 DeepMRMD:1;iRNA_m5C:0.999536712157815 6666 chr1 242042454 242042454 1 + C G rs61736331 242042447 + 242042427 242042467 41 CAGCAGTTCCGAAGAAAGAGCGATTCCCCCACCTCTTTGCC CAGCAGTTCCGAAGAAAGAGCGATTCCGCCACCTCTTTGCC < 41bp 1 0.189993886831812 1 0.0885502994060516 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242042447 chr1:242042454 nonsynonymous SNV 0.003 0 28 hm5C_associated_SNPs_3514 0 0 1 0 0 Nucleus 1 0.500231643906406 1 0.999536712187188 hm5C_site_6666 DeepMRMD:1;iRNA_m5C:0.999536712187188 6667 chr1 244217415 244217415 1 + C T rs151264221 244217405 + 244217385 244217425 41 TGAAGACGTGCTAGCAGCTGCCAGTTATCTCCACATGTATG TGAAGACGTGCTAGCAGCTGCCAGTTATCTTCACATGTATG < 41bp 1 0.144643494639971 1 0.0995930731296539 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB18 ENSG00000179456 CDS Human protein_coding chr1:244217405 chr1:244217415 synonymous SNV . 0 31 hm5C_associated_SNPs_3515 0 0 1 0 0 Cytosol 1 0.500344920005315 1 0.99931015998937 hm5C_site_6667 DeepMRMD:1;iRNA_m5C:0.99931015998937 6668 chr1 244870871 244870871 1 + G T rs79307321 244870862 + 244870842 244870882 41 GCAAAACACTAAGGCTCTAGCAGTGACTTGTTCACTAAAAA GCAAAACACTAAGGCTCTAGCAGTGACTTTTTCACTAAAAA < 41bp 1 0.649728772254346 1 0.303560018539429 experiment 0.700542455491307 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DESI2 ENSG00000121644 UTR3 Human protein_coding chr1:244870862 chr1:244870871 . . 0 30 hm5C_associated_SNPs_3516 0 0 1 1 0 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_6668 DeepMRMD:1;iRNA_m5C:0.99953671215781 6669 chr1 248039245 248039245 1 + C T rs59513666 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTTTTGACCGCCGACCTGCGCAGTGTGCA < 41bp 1 0.697740042487108 1 0.58323872089386 experiment 0.604519915025784 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039245 synonymous SNV . 0 15 hm5C_associated_SNPs_3518 0 0 0 0 2 Cytosol 1 0.500237278943157 0.83352255821228 0.999525442113687 hm5C_site_6669 DeepMRMD:0.83352255821228;iRNA_m5C:0.999525442113687 6670 chr1 249168096 249168096 1 + G A rs28582293 249168081 + 249168061 249168101 41 TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGGTAAGCACCT TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGGTAAACACCT < 41bp 1 0.528620389021923 1 0.429389744997025 experiment 0.942759221956154 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168081 chr1:249168096 . . 0 36 hm5C_associated_SNPs_3519 0 0 1 0 0 unknown 1 0.500231585016644 1 0.999536829966712 hm5C_site_6670 DeepMRMD:1;iRNA_m5C:0.999536829966712 6671 chr1 249168096 249168096 1 + G A rs28582293 249168082 + 249168062 249168102 41 GGCCGAGTGGTCTAAGGCGCCAGACTCAAGGTAAGCACCTT GGCCGAGTGGTCTAAGGCGCCAGACTCAAGGTAAACACCTT < 41bp 1 0.355128901156807 1 0.649226129055023 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168082 chr1:249168096 . . 0 35 hm5C_associated_SNPs_3520 0 0 1 0 0 unknown 1 0.500231643921092 0.701547741889954 0.999536712157815 hm5C_site_6671 DeepMRMD:0.701547741889954;iRNA_m5C:0.999536712157815 6672 chr1 249168096 249168096 1 + G A rs28582293 249168097 + 249168077 249168117 41 GGCGCCAGACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCT GGCGCCAGACTCAAGGTAAACACCTTGCCTGCGGGCTTTCT < 41bp 1 0.454429757740467 1 0.260200917720795 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168097 chr1:249168096 . . 0 20 hm5C_associated_SNPs_3522 0 0 1 0 0 unknown 1 0.500231644736244 1 0.999536710527512 hm5C_site_6672 DeepMRMD:1;iRNA_m5C:0.999536710527512 6673 chr1 249168096 249168096 1 + G A rs28582293 249168099 + 249168079 249168119 41 CGCCAGACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCTGG CGCCAGACTCAAGGTAAACACCTTGCCTGCGGGCTTTCTGG < 41bp 1 0.119184047358719 1 0.15195620059967 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168099 chr1:249168096 . . 0 18 hm5C_associated_SNPs_3523 0 0 1 0 0 unknown 1 0.500231671278645 1 0.999536657442709 hm5C_site_6673 DeepMRMD:1;iRNA_m5C:0.999536657442709 6674 chr1 249168096 249168096 1 + G A rs28582293 249168100 + 249168080 249168120 41 GCCAGACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCTGGT GCCAGACTCAAGGTAAACACCTTGCCTGCGGGCTTTCTGGT < 41bp 1 0.289831034423397 1 0.161813586950302 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168100 chr1:249168096 . . 0 17 hm5C_associated_SNPs_3524 0 0 1 0 0 unknown 1 0.500231969907368 1 0.999536060185264 hm5C_site_6674 DeepMRMD:1;iRNA_m5C:0.999536060185264 6675 chr1 249168096 249168096 1 + G A rs28582293 249168104 + 249168084 249168124 41 GACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCTGGTCTCC GACTCAAGGTAAACACCTTGCCTGCGGGCTTTCTGGTCTCC < 41bp 1 0.16116947073088 1 0.0591495633125305 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168104 chr1:249168096 . . 0 13 hm5C_associated_SNPs_3525 0 0 1 0 0 unknown 1 0.500226832025491 1 0.999546335949018 hm5C_site_6675 DeepMRMD:1;iRNA_m5C:0.999546335949018 6676 chr1 249168096 249168096 1 + G A rs28582293 249168112 + 249168092 249168132 41 GTAAGCACCTTGCCTGCGGGCTTTCTGGTCTCCGGATGGAG GTAAACACCTTGCCTGCGGGCTTTCTGGTCTCCGGATGGAG < 41bp 1 0.0404679363622074 1 0.0453341007232666 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168112 chr1:249168096 . . 0 5 hm5C_associated_SNPs_3528 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6676 DeepMRMD:1;iRNA_m5C:0.999536712157815 6677 chr1 249168105 249168105 1 + C A rs191209788 249168086 + 249168066 249168106 41 GAGTGGTCTAAGGCGCCAGACTCAAGGTAAGCACCTTGCCT GAGTGGTCTAAGGCGCCAGACTCAAGGTAAGCACCTTGCAT < 41bp 1 0.68959245433542 1 0.463831305503845 experiment 0.620815091329159 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168086 chr1:249168105 . . 0 40 hm5C_associated_SNPs_3530 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_6677 DeepMRMD:1;iRNA_m5C:0.999536712157815 6678 chr1 249168105 249168105 1 + C A rs191209788 249168097 + 249168077 249168117 41 GGCGCCAGACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCT GGCGCCAGACTCAAGGTAAGCACCTTGCATGCGGGCTTTCT < 41bp 1 0.429674096868313 1 0.221115440130234 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168097 chr1:249168105 . . 0 29 hm5C_associated_SNPs_3531 0 0 1 0 0 unknown 1 0.500231643923449 1 0.999536712153103 hm5C_site_6678 DeepMRMD:1;iRNA_m5C:0.999536712153103 6679 chr1 249168105 249168105 1 + C A rs191209788 249168099 + 249168079 249168119 41 CGCCAGACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCTGG CGCCAGACTCAAGGTAAGCACCTTGCATGCGGGCTTTCTGG < 41bp 1 0.0963386443488578 1 0.149402767419815 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168099 chr1:249168105 . . 0 27 hm5C_associated_SNPs_3532 0 0 1 0 0 unknown 1 0.500231643921424 1 0.999536712157151 hm5C_site_6679 DeepMRMD:1;iRNA_m5C:0.999536712157151 6680 chr1 249168105 249168105 1 + C A rs191209788 249168100 + 249168080 249168120 41 GCCAGACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCTGGT GCCAGACTCAAGGTAAGCACCTTGCATGCGGGCTTTCTGGT < 41bp 1 0.269608913554369 1 0.253961563110352 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168100 chr1:249168105 . . 0 26 hm5C_associated_SNPs_3533 0 0 1 0 0 unknown 1 0.500231932660156 1 0.999536134679689 hm5C_site_6680 DeepMRMD:1;iRNA_m5C:0.999536134679689 6681 chr1 249168105 249168105 1 + C A rs191209788 249168104 + 249168084 249168124 41 GACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCTGGTCTCC GACTCAAGGTAAGCACCTTGCATGCGGGCTTTCTGGTCTCC < 41bp 1 0.454021051479754 1 0.103540420532227 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168104 chr1:249168105 . . 0 22 hm5C_associated_SNPs_3534 0 0 1 0 0 unknown 1 0.500229019071926 1 0.999541961856149 hm5C_site_6681 DeepMRMD:1;iRNA_m5C:0.999541961856149 6682 chr1 249168105 249168105 1 + C A rs191209788 249168112 + 249168092 249168132 41 GTAAGCACCTTGCCTGCGGGCTTTCTGGTCTCCGGATGGAG GTAAGCACCTTGCATGCGGGCTTTCTGGTCTCCGGATGGAG < 41bp 1 0.0378192547417482 1 0.0302203297615051 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168112 chr1:249168105 . . 0 14 hm5C_associated_SNPs_3535 0 0 1 0 0 unknown 1 0.500231643030135 1 0.999536713939729 hm5C_site_6682 DeepMRMD:1;iRNA_m5C:0.999536713939729 6683 chr1 249168105 249168105 1 + C A rs191209788 249168121 + 249168101 249168141 41 TTGCCTGCGGGCTTTCTGGTCTCCGGATGGAGGCGTGGGTT TTGCATGCGGGCTTTCTGGTCTCCGGATGGAGGCGTGGGTT < 41bp 1 0.670588426015504 1 0.466534972190857 experiment 0.658823147968993 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168121 chr1:249168105 . . 0 5 hm5C_associated_SNPs_3537 0 0 1 0 0 unknown 1 0.500231645484556 1 0.999536709030887 hm5C_site_6683 DeepMRMD:1;iRNA_m5C:0.999536709030887 6684 chr1 249168105 249168105 1 + C A rs191209788 249168124 + 249168104 249168144 41 CCTGCGGGCTTTCTGGTCTCCGGATGGAGGCGTGGGTTCGA CATGCGGGCTTTCTGGTCTCCGGATGGAGGCGTGGGTTCGA < 41bp 1 0.561431624663492 1 0.825841188430786 experiment 0.877136750673015 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168124 chr1:249168105 . . 0 2 hm5C_associated_SNPs_3538 0 0 1 0 0 unknown 1 0.500231645346675 0.348317623138428 0.999536709306651 hm5C_site_6684 DeepMRMD:0.348317623138428;iRNA_m5C:0.999536709306651 6685 chr1 249168107 249168107 1 + G C rs4926501 249168097 + 249168077 249168117 41 GGCGCCAGACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCT GGCGCCAGACTCAAGGTAAGCACCTTGCCTCCGGGCTTTCT < 41bp 1 0.455945516235945 1 0.219650596380234 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168097 chr1:249168107 . . 0 31 hm5C_associated_SNPs_3539 0 0 1 0 0 unknown 1 0.500231643921233 1 0.999536712157534 hm5C_site_6685 DeepMRMD:1;iRNA_m5C:0.999536712157534 6686 chr1 249168107 249168107 1 + G C rs4926501 249168099 + 249168079 249168119 41 CGCCAGACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCTGG CGCCAGACTCAAGGTAAGCACCTTGCCTCCGGGCTTTCTGG < 41bp 1 0.077156262912812 1 0.0898120105266571 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168099 chr1:249168107 . . 0 29 hm5C_associated_SNPs_3540 0 0 1 0 0 unknown 1 0.500231643921113 1 0.999536712157774 hm5C_site_6686 DeepMRMD:1;iRNA_m5C:0.999536712157774 6687 chr1 249168107 249168107 1 + G C rs4926501 249168100 + 249168080 249168120 41 GCCAGACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCTGGT GCCAGACTCAAGGTAAGCACCTTGCCTCCGGGCTTTCTGGT < 41bp 1 0.23069634061661 1 0.255203902721405 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168100 chr1:249168107 . . 0 28 hm5C_associated_SNPs_3541 0 0 1 0 0 unknown 1 0.500231767052947 1 0.999536465894107 hm5C_site_6687 DeepMRMD:1;iRNA_m5C:0.999536465894107 6688 chr1 249168107 249168107 1 + G C rs4926501 249168104 + 249168084 249168124 41 GACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCTGGTCTCC GACTCAAGGTAAGCACCTTGCCTCCGGGCTTTCTGGTCTCC < 41bp 1 0.104200540957728 1 0.0676821768283844 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168104 chr1:249168107 . . 0 24 hm5C_associated_SNPs_3542 0 0 1 0 0 unknown 1 0.50023164392116 1 0.999536712157679 hm5C_site_6688 DeepMRMD:1;iRNA_m5C:0.999536712157679 6689 chr1 249168107 249168107 1 + G C rs4926501 249168112 + 249168092 249168132 41 GTAAGCACCTTGCCTGCGGGCTTTCTGGTCTCCGGATGGAG GTAAGCACCTTGCCTCCGGGCTTTCTGGTCTCCGGATGGAG < 41bp 1 0.0365522562378394 1 0.0378593504428864 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168112 chr1:249168107 . . 0 16 hm5C_associated_SNPs_3545 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6689 DeepMRMD:1;iRNA_m5C:0.999536712157815 6690 chr1 249168107 249168107 1 + G C rs4926501 249168121 + 249168101 249168141 41 TTGCCTGCGGGCTTTCTGGTCTCCGGATGGAGGCGTGGGTT TTGCCTCCGGGCTTTCTGGTCTCCGGATGGAGGCGTGGGTT < 41bp 1 0.632677272403689 1 0.530763268470764 experiment 0.734645455192622 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168121 chr1:249168107 . . 0 7 hm5C_associated_SNPs_3547 0 0 1 0 0 unknown 1 0.500231643920853 0.938473463058472 0.999536712158294 hm5C_site_6690 DeepMRMD:0.938473463058472;iRNA_m5C:0.999536712158294 6691 chr1 249168107 249168107 1 + G C rs4926501 249168124 + 249168104 249168144 41 CCTGCGGGCTTTCTGGTCTCCGGATGGAGGCGTGGGTTCGA CCTCCGGGCTTTCTGGTCTCCGGATGGAGGCGTGGGTTCGA < 41bp 1 0.623913180363192 1 0.846112489700317 experiment 0.752173639273617 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168124 chr1:249168107 . . 0 4 hm5C_associated_SNPs_3548 0 0 1 0 0 unknown 1 0.500231644088859 0.307775020599366 0.999536711822281 hm5C_site_6691 DeepMRMD:0.307775020599366;iRNA_m5C:0.999536711822281 6692 chr1 249168110 249168110 1 + G A rs11582086 249168097 + 249168077 249168117 41 GGCGCCAGACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCT GGCGCCAGACTCAAGGTAAGCACCTTGCCTGCGAGCTTTCT < 41bp 1 0.395943130801307 1 0.137116640806198 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168097 chr1:249168110 . . 0 34 hm5C_associated_SNPs_3549 0 0 1 0 0 unknown 1 0.50023164391899 1 0.999536712162021 hm5C_site_6692 DeepMRMD:1;iRNA_m5C:0.999536712162021 6693 chr1 249168110 249168110 1 + G A rs11582086 249168099 + 249168079 249168119 41 CGCCAGACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCTGG CGCCAGACTCAAGGTAAGCACCTTGCCTGCGAGCTTTCTGG < 41bp 1 0.0833810551864782 1 0.0974104702472687 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168099 chr1:249168110 . . 0 32 hm5C_associated_SNPs_3550 0 0 1 0 0 unknown 1 0.500231643922283 1 0.999536712155435 hm5C_site_6693 DeepMRMD:1;iRNA_m5C:0.999536712155435 6694 chr1 249168110 249168110 1 + G A rs11582086 249168100 + 249168080 249168120 41 GCCAGACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCTGGT GCCAGACTCAAGGTAAGCACCTTGCCTGCGAGCTTTCTGGT < 41bp 1 0.277028220408348 1 0.211683869361877 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168100 chr1:249168110 . . 0 31 hm5C_associated_SNPs_3551 0 0 1 0 0 unknown 1 0.501709759268524 1 0.996580481462952 hm5C_site_6694 DeepMRMD:1;iRNA_m5C:0.996580481462952 6695 chr1 249168110 249168110 1 + G A rs11582086 249168104 + 249168084 249168124 41 GACTCAAGGTAAGCACCTTGCCTGCGGGCTTTCTGGTCTCC GACTCAAGGTAAGCACCTTGCCTGCGAGCTTTCTGGTCTCC < 41bp 1 0.216066670164037 1 0.0596499741077423 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168104 chr1:249168110 . . 0 27 hm5C_associated_SNPs_3552 0 0 1 0 0 unknown 1 0.500230222684398 1 0.999539554631204 hm5C_site_6695 DeepMRMD:1;iRNA_m5C:0.999539554631204 6696 chr1 249168110 249168110 1 + G A rs11582086 249168108 + 249168088 249168128 41 CAAGGTAAGCACCTTGCCTGCGGGCTTTCTGGTCTCCGGAT CAAGGTAAGCACCTTGCCTGCGAGCTTTCTGGTCTCCGGAT < 41bp 1 0.619297904565188 1 0.118329167366028 experiment 0.761404190869625 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168108 chr1:249168110 . . 0 23 hm5C_associated_SNPs_3554 0 0 1 0 0 unknown 1 0.500231659782804 1 0.999536680434392 hm5C_site_6696 DeepMRMD:1;iRNA_m5C:0.999536680434392 6697 chr1 249168110 249168110 1 + G A rs11582086 249168112 + 249168092 249168132 41 GTAAGCACCTTGCCTGCGGGCTTTCTGGTCTCCGGATGGAG GTAAGCACCTTGCCTGCGAGCTTTCTGGTCTCCGGATGGAG < 41bp 1 0.0565682173816442 1 0.0294259488582611 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168112 chr1:249168110 . . 0 19 hm5C_associated_SNPs_3555 0 0 1 0 0 unknown 1 0.500231643923122 1 0.999536712153755 hm5C_site_6697 DeepMRMD:1;iRNA_m5C:0.999536712153755 6698 chr1 249168110 249168110 1 + G A rs11582086 249168121 + 249168101 249168141 41 TTGCCTGCGGGCTTTCTGGTCTCCGGATGGAGGCGTGGGTT TTGCCTGCGAGCTTTCTGGTCTCCGGATGGAGGCGTGGGTT < 41bp 1 0.596124574449511 1 0.49519607424736 experiment 0.807750851100977 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168121 chr1:249168110 . . 0 10 hm5C_associated_SNPs_3557 0 0 1 0 0 unknown 1 0.500231643944773 1 0.999536712110455 hm5C_site_6698 DeepMRMD:1;iRNA_m5C:0.999536712110455 6699 chr1 249168110 249168110 1 + G A rs11582086 249168124 + 249168104 249168144 41 CCTGCGGGCTTTCTGGTCTCCGGATGGAGGCGTGGGTTCGA CCTGCGAGCTTTCTGGTCTCCGGATGGAGGCGTGGGTTCGA < 41bp 1 0.651301946786709 1 0.82507187128067 experiment 0.697396106426582 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168124 chr1:249168110 . . 0 7 hm5C_associated_SNPs_3558 0 0 1 0 0 unknown 1 0.500231643921112 0.34985625743866 0.999536712157775 hm5C_site_6699 DeepMRMD:0.34985625743866;iRNA_m5C:0.999536712157775 6700 chr1 249168490 249168490 1 + C G rs552356830 249168476 + 249168456 249168496 41 GTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCG GTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGGGGCCCG < 41bp 1 0.296505157153004 1 0.442742913961411 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168476 chr1:249168490 . . 0 35 hm5C_associated_SNPs_3559 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_6700 DeepMRMD:1;iRNA_m5C:0.999536712157815 6701 chr1 249168490 249168490 1 + C G rs552356830 249168478 + 249168458 249168498 41 CTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGG CTAGTGGTTAGGATTCGGCGCTCTCACCGCCGGGGCCCGGG < 41bp 1 0.0867022855488849 1 0.118786215782166 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168478 chr1:249168490 . . 0 33 hm5C_associated_SNPs_3560 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_6701 DeepMRMD:1;iRNA_m5C:0.999536712157816 6702 chr1 249168490 249168490 1 + C G rs552356830 249168480 + 249168460 249168500 41 AGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTT AGTGGTTAGGATTCGGCGCTCTCACCGCCGGGGCCCGGGTT < 41bp 1 0.285062842918017 1 0.163883477449417 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168480 chr1:249168490 . . 0 31 hm5C_associated_SNPs_3561 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_6702 DeepMRMD:1;iRNA_m5C:0.999536712157815 6703 chr1 249168490 249168490 1 + C G rs552356830 249168484 + 249168464 249168504 41 GTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGAT GTTAGGATTCGGCGCTCTCACCGCCGGGGCCCGGGTTCGAT < 41bp 1 0.412566611712916 1 0.406782478094101 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168484 chr1:249168490 . . 0 27 hm5C_associated_SNPs_3563 0 0 1 0 0 unknown 1 0.500231643952726 1 0.999536712094549 hm5C_site_6703 DeepMRMD:1;iRNA_m5C:0.999536712094549 6704 chr1 249168490 249168490 1 + C G rs552356830 249168487 + 249168467 249168507 41 AGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCC AGGATTCGGCGCTCTCACCGCCGGGGCCCGGGTTCGATTCC < 41bp 1 0.632866119047447 1 0.923401236534119 experiment 0.734267761905106 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168487 chr1:249168490 . . 0 24 hm5C_associated_SNPs_3565 0 0 1 0 0 unknown 1 0.500231643229609 0.153197526931762 0.999536713540783 hm5C_site_6704 DeepMRMD:0.153197526931762;iRNA_m5C:0.999536713540783 6705 chr1 249168490 249168490 1 + C G rs552356830 249168493 + 249168473 249168513 41 CGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCA CGGCGCTCTCACCGCCGGGGCCCGGGTTCGATTCCCGGTCA < 41bp 1 0.631948534318195 1 0.240956723690033 experiment 0.736102931363609 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168493 chr1:249168490 . . 0 18 hm5C_associated_SNPs_3567 0 0 1 0 0 unknown 1 0.500231184684829 1 0.999537630630343 hm5C_site_6705 DeepMRMD:1;iRNA_m5C:0.999537630630343 6706 chr1 249168490 249168490 1 + C G rs552356830 249168494 + 249168474 249168514 41 GGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAG GGCGCTCTCACCGCCGGGGCCCGGGTTCGATTCCCGGTCAG < 41bp 1 0.684854719105838 1 0.32283690571785 experiment 0.630290561788325 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168494 chr1:249168490 . . 0 17 hm5C_associated_SNPs_3568 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6706 DeepMRMD:1;iRNA_m5C:0.999536712157815 6707 chr1 249168490 249168490 1 + C G rs552356830 249168495 + 249168475 249168515 41 GCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGG GCGCTCTCACCGCCGGGGCCCGGGTTCGATTCCCGGTCAGG < 41bp 1 0.564046237299298 1 0.561984658241272 experiment 0.871907525401405 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168495 chr1:249168490 . . 0 16 hm5C_associated_SNPs_3569 0 0 1 0 0 unknown 1 0.500231643318295 0.876030683517456 0.99953671336341 hm5C_site_6707 DeepMRMD:0.876030683517456;iRNA_m5C:0.99953671336341 6708 chr1 249168490 249168490 1 + C G rs552356830 249168501 + 249168481 249168521 41 TCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGAAAGTA TCACCGCCGGGGCCCGGGTTCGATTCCCGGTCAGGAAAGTA < 41bp 1 0.211096407266951 1 0.0721768140792847 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168501 chr1:249168490 . . 0 10 hm5C_associated_SNPs_3570 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6708 DeepMRMD:1;iRNA_m5C:0.999536712157815 6709 chr1 249168490 249168490 1 + C G rs552356830 249168507 + 249168487 249168527 41 CCGCGGCCCGGGTTCGATTCCCGGTCAGGAAAGTAAGCCGT CCGGGGCCCGGGTTCGATTCCCGGTCAGGAAAGTAAGCCGT < 41bp 1 0.517511117967989 1 0.316167324781418 experiment 0.964977764064022 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168507 chr1:249168490 . . 0 4 hm5C_associated_SNPs_3572 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6709 DeepMRMD:1;iRNA_m5C:0.999536712157815 6710 chr1 249168490 249168490 1 + C G rs552356830 249168508 + 249168488 249168528 41 CGCGGCCCGGGTTCGATTCCCGGTCAGGAAAGTAAGCCGTT CGGGGCCCGGGTTCGATTCCCGGTCAGGAAAGTAAGCCGTT < 41bp 1 0.286884362569087 1 0.120271414518356 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168508 chr1:249168490 . . 0 3 hm5C_associated_SNPs_3573 0 0 1 0 0 unknown 1 0.500231643935547 1 0.999536712128906 hm5C_site_6710 DeepMRMD:1;iRNA_m5C:0.999536712128906 6711 chr1 249168492 249168492 1 + G A rs560366242 249168476 + 249168456 249168496 41 GTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCG GTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGACCCG < 41bp 1 0.287879642082856 1 0.507046580314636 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168476 chr1:249168492 . . 0 37 hm5C_associated_SNPs_3574 0 0 1 0 0 unknown 1 0.500217140103393 0.985906839370728 0.999565719793214 hm5C_site_6711 DeepMRMD:0.985906839370728;iRNA_m5C:0.999565719793214 6712 chr1 249168492 249168492 1 + G A rs560366242 249168478 + 249168458 249168498 41 CTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGG CTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGACCCGGG < 41bp 1 0.0839769864625101 1 0.162508636713028 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168478 chr1:249168492 . . 0 35 hm5C_associated_SNPs_3575 0 0 1 0 0 unknown 1 0.50023164353808 1 0.999536712923839 hm5C_site_6712 DeepMRMD:1;iRNA_m5C:0.999536712923839 6713 chr1 249168492 249168492 1 + G A rs560366242 249168480 + 249168460 249168500 41 AGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTT AGTGGTTAGGATTCGGCGCTCTCACCGCCGCGACCCGGGTT < 41bp 1 0.308392205606804 1 0.147890567779541 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168480 chr1:249168492 . . 0 33 hm5C_associated_SNPs_3576 0 0 1 0 0 unknown 1 0.500231643921225 1 0.99953671215755 hm5C_site_6713 DeepMRMD:1;iRNA_m5C:0.99953671215755 6714 chr1 249168492 249168492 1 + G A rs560366242 249168484 + 249168464 249168504 41 GTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGAT GTTAGGATTCGGCGCTCTCACCGCCGCGACCCGGGTTCGAT < 41bp 1 0.36291213052079 1 0.431757271289825 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168484 chr1:249168492 . . 0 29 hm5C_associated_SNPs_3578 0 0 1 0 0 unknown 1 0.50023164411472 1 0.99953671177056 hm5C_site_6714 DeepMRMD:1;iRNA_m5C:0.99953671177056 6715 chr1 249168492 249168492 1 + G A rs560366242 249168485 + 249168465 249168505 41 TTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATT TTAGGATTCGGCGCTCTCACCGCCGCGACCCGGGTTCGATT < 41bp 1 0.589287895406874 1 0.890265822410583 experiment 0.821424209186252 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168485 chr1:249168492 . . 0 28 hm5C_associated_SNPs_3579 0 0 1 0 0 unknown 1 0.50023151734945 0.219468355178834 0.999536965301099 hm5C_site_6715 DeepMRMD:0.219468355178834;iRNA_m5C:0.999536965301099 6716 chr1 249168492 249168492 1 + G A rs560366242 249168487 + 249168467 249168507 41 AGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCC AGGATTCGGCGCTCTCACCGCCGCGACCCGGGTTCGATTCC < 41bp 1 0.350414122867906 1 0.7979336977005 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168487 chr1:249168492 . . 0 26 hm5C_associated_SNPs_3580 0 0 1 0 0 unknown 1 0.500231648475622 0.404132604599 0.999536703048756 hm5C_site_6716 DeepMRMD:0.404132604599;iRNA_m5C:0.999536703048756 6717 chr1 249168492 249168492 1 + G A rs560366242 249168490 + 249168470 249168510 41 ATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGG ATTCGGCGCTCTCACCGCCGCGACCCGGGTTCGATTCCCGG < 41bp 1 0.216815795529728 1 0.361228585243225 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168490 chr1:249168492 . . 0 23 hm5C_associated_SNPs_3582 0 0 1 0 0 unknown 1 0.500231643955786 1 0.999536712088428 hm5C_site_6717 DeepMRMD:1;iRNA_m5C:0.999536712088428 6718 chr1 249168492 249168492 1 + G A rs560366242 249168493 + 249168473 249168513 41 CGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCA CGGCGCTCTCACCGCCGCGACCCGGGTTCGATTCCCGGTCA < 41bp 1 0.634722381413491 1 0.296830117702484 experiment 0.730555237173018 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168493 chr1:249168492 . . 0 20 hm5C_associated_SNPs_3583 0 0 1 0 0 unknown 1 0.500231642850187 1 0.999536714299627 hm5C_site_6718 DeepMRMD:1;iRNA_m5C:0.999536714299627 6719 chr1 249168492 249168492 1 + G A rs560366242 249168495 + 249168475 249168515 41 GCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGG GCGCTCTCACCGCCGCGACCCGGGTTCGATTCCCGGTCAGG < 41bp 1 0.589211647044261 1 0.756175875663757 experiment 0.821576705911477 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168495 chr1:249168492 . . 0 18 hm5C_associated_SNPs_3585 0 0 1 0 0 unknown 1 0.500231643919834 0.487648248672486 0.999536712160332 hm5C_site_6719 DeepMRMD:0.487648248672486;iRNA_m5C:0.999536712160332 6720 chr1 249168492 249168492 1 + G A rs560366242 249168501 + 249168481 249168521 41 TCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGAAAGTA TCACCGCCGCGACCCGGGTTCGATTCCCGGTCAGGAAAGTA < 41bp 1 0.154391169689632 1 0.0286838114261627 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168501 chr1:249168492 . . 0 12 hm5C_associated_SNPs_3586 0 0 1 0 0 unknown 1 0.500231651060341 1 0.999536697879318 hm5C_site_6720 DeepMRMD:1;iRNA_m5C:0.999536697879318 6721 chr1 249168492 249168492 1 + G A rs560366242 249168507 + 249168487 249168527 41 CCGCGGCCCGGGTTCGATTCCCGGTCAGGAAAGTAAGCCGT CCGCGACCCGGGTTCGATTCCCGGTCAGGAAAGTAAGCCGT < 41bp 1 0.501774236556903 1 0.349170923233032 experiment 0.996451526886194 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168507 chr1:249168492 . . 0 6 hm5C_associated_SNPs_3588 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_6721 DeepMRMD:1;iRNA_m5C:0.999536712157815 6722 chr1 249168492 249168492 1 + G A rs560366242 249168508 + 249168488 249168528 41 CGCGGCCCGGGTTCGATTCCCGGTCAGGAAAGTAAGCCGTT CGCGACCCGGGTTCGATTCCCGGTCAGGAAAGTAAGCCGTT < 41bp 1 0.270369441480077 1 0.170109331607819 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF692;PGBD2 ENSG00000227237;ENSG00000185220 intergenic Human other chr1:249168508 chr1:249168492 . . 0 5 hm5C_associated_SNPs_3589 0 0 1 0 0 unknown 1 0.50023164271793 1 0.999536714564141 hm5C_site_6722 DeepMRMD:1;iRNA_m5C:0.999536714564141 6723 chr1 249212025 249212025 1 + C T rs201902800 249212016 + 249211996 249212036 41 AGTGAGGAGATCATCGTGTGCCGCTGGCACGATAGCAGCGT AGTGAGGAGATCATCGTGTGCCGCTGGCATGATAGCAGCGT < 41bp 1 0.370607348208007 1 0.153307765722275 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212016 chr1:249212025 synonymous SNV . 0 30 hm5C_associated_SNPs_3590 0 0 0 0 0 Cytosol 1 0.500231502932421 1 0.999536994135157 hm5C_site_6723 DeepMRMD:1;iRNA_m5C:0.999536994135157 6724 chr2 3628503 3628503 1 + C T rs191506876 3628483 + 3628463 3628503 41 TCAATTGTAAACAAAAATGACTAAATAAAAAGTATATATTC TCAATTGTAAACAAAAATGACTAAATAAAAAGTATATATTT < 41bp 1 0.492974316851397 1 0.291646659374237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS7 ENSG00000171863 UTR3 Human protein_coding chr2:3628483 chr2:3628503 . . 0 41 hm5C_associated_SNPs_3591 1 0 1 0 0 Nucleus 1 0.500231644235538 1 0.999536711528923 hm5C_site_6724 DeepMRMD:1;iRNA_m5C:0.999536711528923 Diamond-Blackfan anemia Diamond-Blackfan anemia 6725 chr2 10270783 10270783 1 + G T rs531969479 10270797 + 10270777 10270817 41 GATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGC GATGGATTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGC < 41bp 1 0.443660621045634 1 0.284058570861816 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control RRM2 ENSG00000171848 UTR3 Human protein_coding chr2:10270797 chr2:10270783 . . 0 7 hm5C_associated_SNPs_3592 0 0 1 0 0 Ribosome 1 0.500231637227087 1 0.999536725545827 hm5C_site_6725 DeepMRMD:1;iRNA_m5C:0.999536725545827 6726 chr2 10270783 10270783 1 + G T rs531969479 10270798 + 10270778 10270818 41 ATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCG ATGGATTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCG < 41bp 1 0.52587198171309 1 0.337331891059875 experiment 0.94825603657382 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RRM2 ENSG00000171848 UTR3 Human protein_coding chr2:10270798 chr2:10270783 . . 0 6 hm5C_associated_SNPs_3593 0 0 1 0 0 Ribosome 1 0.500231643920349 1 0.999536712159301 hm5C_site_6726 DeepMRMD:1;iRNA_m5C:0.999536712159301 6727 chr2 10270783 10270783 1 + G T rs531969479 10270799 + 10270779 10270819 41 TGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGC TGGATTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGC < 41bp 1 0.583166715081301 1 0.790978968143463 experiment 0.833666569837399 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RRM2 ENSG00000171848 UTR3 Human protein_coding chr2:10270799 chr2:10270783 . . 0 5 hm5C_associated_SNPs_3594 0 0 1 0 0 Ribosome 1 0.500232761157253 0.418042063713074 0.999534477685493 hm5C_site_6727 DeepMRMD:0.418042063713074;iRNA_m5C:0.999534477685493 6728 chr2 10270801 10270801 1 + G T rs192657663 10270797 + 10270777 10270817 41 GATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGC GATGGAGTCTCGCTCTGTTGCCCATGCTGGAGTGCAGTGGC < 41bp 1 0.303876734455853 1 0.173198580741882 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control RRM2 ENSG00000171848 UTR3 Human protein_coding chr2:10270797 chr2:10270801 . . 0 25 hm5C_associated_SNPs_3595 0 0 1 0 0 Ribosome 1 0.500231670152828 1 0.999536659694344 hm5C_site_6728 DeepMRMD:1;iRNA_m5C:0.999536659694344 6729 chr2 10270801 10270801 1 + G T rs192657663 10270798 + 10270778 10270818 41 ATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCG ATGGAGTCTCGCTCTGTTGCCCATGCTGGAGTGCAGTGGCG < 41bp 1 0.227237764219649 1 0.136264473199844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RRM2 ENSG00000171848 UTR3 Human protein_coding chr2:10270798 chr2:10270801 . . 0 24 hm5C_associated_SNPs_3596 0 0 1 0 0 Ribosome 1 0.500231839545057 1 0.999536320909886 hm5C_site_6729 DeepMRMD:1;iRNA_m5C:0.999536320909886 6730 chr2 10270801 10270801 1 + G T rs192657663 10270799 + 10270779 10270819 41 TGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGC TGGAGTCTCGCTCTGTTGCCCATGCTGGAGTGCAGTGGCGC < 41bp 1 0.328527191722202 1 0.135009497404099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RRM2 ENSG00000171848 UTR3 Human protein_coding chr2:10270799 chr2:10270801 . . 0 23 hm5C_associated_SNPs_3597 0 0 1 0 0 Ribosome 1 0.500235519175651 1 0.999528961648699 hm5C_site_6730 DeepMRMD:1;iRNA_m5C:0.999528961648699 6731 chr2 10270819 10270819 1 + C T rs187569312 10270799 + 10270779 10270819 41 TGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGC TGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGT < 41bp 1 0.60967216842327 1 0.691536962985992 experiment 0.78065566315346 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RRM2 ENSG00000171848 UTR3 Human protein_coding chr2:10270799 chr2:10270819 . . 0 41 hm5C_associated_SNPs_3599 0 0 1 0 0 Ribosome 1 0.500229886783255 0.616926074028016 0.999540226433491 hm5C_site_6731 DeepMRMD:0.616926074028016;iRNA_m5C:0.999540226433491 6732 chr2 11691859 11691859 1 + T C rs559518562 11691864 + 11691844 11691884 41 GTTAGGATTCAGCGCTCCCACCGCCGCAGCCCGGGTTCGAT GTTAGGATTCAGCGCCCCCACCGCCGCAGCCCGGGTTCGAT < 41bp 1 0.0649049188403756 1 0.400290608406067 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GREB1 ENSG00000196208 intronic Human protein_coding chr2:11691864 chr2:11691859 . . 0 16 hm5C_associated_SNPs_3601 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6732 DeepMRMD:1;iRNA_m5C:0.999536712157815 6733 chr2 11691866 11691866 1 + G A rs184202371 11691864 + 11691844 11691884 41 GTTAGGATTCAGCGCTCCCACCGCCGCAGCCCGGGTTCGAT GTTAGGATTCAGCGCTCCCACCACCGCAGCCCGGGTTCGAT < 41bp 1 0.0428194322586281 1 0.240681976079941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GREB1 ENSG00000196208 intronic Human protein_coding chr2:11691864 chr2:11691866 . . 0 23 hm5C_associated_SNPs_3602 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_6733 DeepMRMD:1;iRNA_m5C:0.999536712157815 6734 chr2 11725049 11725049 1 + T C rs12468019 11725038 + 11725018 11725058 41 GTTTGGCATCAATATGGTGACCTCCCGGGAGTGGAGGACCA GTTTGGCATCAATATGGTGACCTCCCGGGAGCGGAGGACCA < 41bp 1 0.00961482062357872 1 0.0822045207023621 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GREB1 ENSG00000239899 ncRNA_exonic Human misc_RNA chr2:11725038 chr2:11725049 . . 0 32 hm5C_associated_SNPs_3603 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_6734 DeepMRMD:1;iRNA_m5C:0.999536712157814 6735 chr2 11725049 11725049 1 + T C rs12468019 11725039 + 11725019 11725059 41 TTTGGCATCAATATGGTGACCTCCCGGGAGTGGAGGACCAC TTTGGCATCAATATGGTGACCTCCCGGGAGCGGAGGACCAC < 41bp 1 0.123669159146928 1 0.269680023193359 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|30526041;GSE122413;RNA-BisSeq;HEK293;Control GREB1 ENSG00000239899 ncRNA_exonic Human misc_RNA chr2:11725039 chr2:11725049 . . 0 31 hm5C_associated_SNPs_3604 0 0 0 0 0 Nucleus 1 0.500231673223937 1 0.999536653552126 hm5C_site_6735 DeepMRMD:1;iRNA_m5C:0.999536653552126 6736 chr2 11725049 11725049 1 + T C rs12468019 11725041 + 11725021 11725061 41 TGGCATCAATATGGTGACCTCCCGGGAGTGGAGGACCACCA TGGCATCAATATGGTGACCTCCCGGGAGCGGAGGACCACCA < 41bp 1 0.286627975712955 1 0.856449961662292 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|30526041;GSE122413;RNA-BisSeq;HEK293;Control GREB1 ENSG00000239899 ncRNA_exonic Human misc_RNA chr2:11725041 chr2:11725049 . . 0 29 hm5C_associated_SNPs_3605 0 0 0 0 0 Nucleus 1 0.500231643921028 0.287100076675416 0.999536712157944 hm5C_site_6736 DeepMRMD:0.287100076675416;iRNA_m5C:0.999536712157944 6737 chr2 11725049 11725049 1 + T C rs12468019 11725042 + 11725022 11725062 41 GGCATCAATATGGTGACCTCCCGGGAGTGGAGGACCACCAG GGCATCAATATGGTGACCTCCCGGGAGCGGAGGACCACCAG < 41bp 1 0.305872391845446 1 0.852845311164856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|30526041;GSE122413;RNA-BisSeq;HEK293;Control GREB1 ENSG00000239899 ncRNA_exonic Human misc_RNA chr2:11725042 chr2:11725049 . . 0 28 hm5C_associated_SNPs_3606 0 0 0 0 0 Nucleus 1 0.500231643921417 0.294309377670288 0.999536712157167 hm5C_site_6737 DeepMRMD:0.294309377670288;iRNA_m5C:0.999536712157167 6738 chr2 11725049 11725049 1 + T C rs12468019 11725060 + 11725040 11725080 41 TCCCGGGAGTGGAGGACCACCAGGTTGCCTAAGGAGGGGTG TCCCGGGAGCGGAGGACCACCAGGTTGCCTAAGGAGGGGTG < 41bp 1 0.305967620362252 1 0.914253056049347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GREB1 ENSG00000239899 ncRNA_exonic Human misc_RNA chr2:11725060 chr2:11725049 . . 0 10 hm5C_associated_SNPs_3608 0 0 0 0 0 Nucleus 1 0.500231630030823 0.171493887901306 0.999536739938353 hm5C_site_6738 DeepMRMD:0.171493887901306;iRNA_m5C:0.999536739938353 6739 chr2 11725094 11725094 1 + C T rs13432243 11725083 + 11725063 11725103 41 GTTGCCTAAGGAGGGGTGAACCGGTCCAGGTCGGAATGAAA GTTGCCTAAGGAGGGGTGAACCGGTCCAGGTTGGAATGAAA < 41bp 1 0.087112817789565 1 0.174569636583328 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GREB1 ENSG00000239899 ncRNA_exonic Human misc_RNA chr2:11725083 chr2:11725094 . . 0 32 hm5C_associated_SNPs_3609 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6739 DeepMRMD:1;iRNA_m5C:0.999536712157815 6740 chr2 11725094 11725094 1 + C T rs13432243 11725088 + 11725068 11725108 41 CTAAGGAGGGGTGAACCGGTCCAGGTCGGAATGAAACATTT CTAAGGAGGGGTGAACCGGTCCAGGTTGGAATGAAACATTT < 41bp 1 0.174063229248616 1 0.28979480266571 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GREB1 ENSG00000239899 ncRNA_exonic Human misc_RNA chr2:11725088 chr2:11725094 . . 0 27 hm5C_associated_SNPs_3610 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6740 DeepMRMD:1;iRNA_m5C:0.999536712157815 6741 chr2 11725094 11725094 1 + C T rs13432243 11725089 + 11725069 11725109 41 TAAGGAGGGGTGAACCGGTCCAGGTCGGAATGAAACATTTA TAAGGAGGGGTGAACCGGTCCAGGTTGGAATGAAACATTTA < 41bp 1 0.121801316529856 1 0.27448308467865 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GREB1 ENSG00000239899 ncRNA_exonic Human misc_RNA chr2:11725089 chr2:11725094 . . 0 26 hm5C_associated_SNPs_3611 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_6741 DeepMRMD:1;iRNA_m5C:0.999536712157814 6742 chr2 11924293 11924293 1 + G A rs3762583 11924313 + 11924293 11924333 41 GCTGGCATGCACCTGTAATCCCAGCTACTCGGGAGGCTGAG ACTGGCATGCACCTGTAATCCCAGCTACTCGGGAGGCTGAG < 41bp 1 0.149162206716929 1 0.374938666820526 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN1 ENSG00000134324 intronic Human protein_coding chr2:11924313 chr2:11924293 . . 0 1 hm5C_associated_SNPs_3612 0 0 1 2 0 Cytosol 1 0.500231594944581 1 0.999536810110837 hm5C_site_6742 DeepMRMD:1;iRNA_m5C:0.999536810110837 6743 chr2 15770968 15770968 1 + G A rs139636088 15770972 + 15770952 15770992 41 GGCTGCCCTTGAAAAGGAGGCGCAGACATCTTTCCTGCATC GGCTGCCCTTGAAAAGAAGGCGCAGACATCTTTCCTGCATC < 41bp 1 0.584869016313597 1 0.444306463003159 experiment 0.830261967372806 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770972 chr2:15770968 nonsynonymous SNV 0.996 1 17 hm5C_associated_SNPs_3613 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6743 DeepMRMD:1;iRNA_m5C:0.999536712157815 6744 chr2 15770968 15770968 1 + G A rs139636088 15770974 + 15770954 15770994 41 CTGCCCTTGAAAAGGAGGCGCAGACATCTTTCCTGCATCTT CTGCCCTTGAAAAGAAGGCGCAGACATCTTTCCTGCATCTT < 41bp 1 0.200003152343216 1 0.127003401517868 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770974 chr2:15770968 nonsynonymous SNV 0.996 1 15 hm5C_associated_SNPs_3614 0 0 1 0 1 Cytosol 1 0.500231643921121 1 0.999536712157759 hm5C_site_6744 DeepMRMD:1;iRNA_m5C:0.999536712157759 6745 chr2 20646846 20646846 1 + C G rs187592043 20646860 + 20646840 20646880 41 CCACCGCAGTCTGGTTGGAGCTGTTGTCTTGTATGCTCAGC CCACCGGAGTCTGGTTGGAGCTGTTGTCTTGTATGCTCAGC < 41bp 1 0.534826382666061 1 0.095941573381424 experiment 0.930347234667879 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOB ENSG00000143878 UTR5 Human protein_coding chr2:20646860 chr2:20646846 . . 0 7 hm5C_associated_SNPs_3615 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6745 DeepMRMD:1;iRNA_m5C:0.999536712157815 6746 chr2 20646868 20646868 1 + T C rs142159875 20646860 + 20646840 20646880 41 CCACCGCAGTCTGGTTGGAGCTGTTGTCTTGTATGCTCAGC CCACCGCAGTCTGGTTGGAGCTGTTGTCCTGTATGCTCAGC < 41bp 1 0.529970677307929 1 0.0618518888950348 experiment 0.940058645384142 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOB ENSG00000143878 UTR5 Human protein_coding chr2:20646860 chr2:20646868 . . 0 29 hm5C_associated_SNPs_3616 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6746 DeepMRMD:1;iRNA_m5C:0.999536712157815 6747 chr2 20646872 20646872 1 + A G rs146047620 20646860 + 20646840 20646880 41 CCACCGCAGTCTGGTTGGAGCTGTTGTCTTGTATGCTCAGC CCACCGCAGTCTGGTTGGAGCTGTTGTCTTGTGTGCTCAGC < 41bp 1 0.516647400141627 1 0.0526347756385803 experiment 0.966705199716746 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOB ENSG00000143878 UTR5 Human protein_coding chr2:20646860 chr2:20646872 . . 0 33 hm5C_associated_SNPs_3617 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6747 DeepMRMD:1;iRNA_m5C:0.999536712157815 6748 chr2 20647215 20647215 1 + C A rs200862679 20647198 + 20647178 20647218 41 CAGCGAGGCGTTCGCGGGCCCCCTCCTGCTGCCCGGGCCCG CAGCGAGGCGTTCGCGGGCCCCCTCCTGCTGCCCGGGACCG < 41bp 1 0.409428942940269 1 0.0949898362159729 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOB ENSG00000143878 UTR5 Human protein_coding chr2:20647198 chr2:20647215 . . 0 38 hm5C_associated_SNPs_3618 0 0 1 0 0 Cytosol 1 0.500231644574786 1 0.999536710850428 hm5C_site_6748 DeepMRMD:1;iRNA_m5C:0.999536710850428 6749 chr2 20870778 20870778 1 + G A rs369980607 20870771 + 20870751 20870791 41 ACCGCGTCGCCAAGGGCAGTCATTGGCGGCCGCAGACGGAG ACCGCGTCGCCAAGGGCAGTCATTGGCAGCCGCAGACGGAG < 41bp 1 0.32440983866035 1 0.0681683123111725 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GDF7 ENSG00000143869 CDS Human protein_coding chr2:20870771 chr2:20870778 nonsynonymous SNV 0.130 0 28 hm5C_associated_SNPs_3619 0 0 0 0 0 exosome 1 0.500216985626833 1 0.999566028746333 hm5C_site_6749 DeepMRMD:1;iRNA_m5C:0.999566028746333 6750 chr2 24163433 24163433 1 + G A rs112997568 24163437 + 24163417 24163457 41 CGCTCCGGCTCTGAAGGGCTCCAGCCAAACGGAGCCCGCGG CGCTCCGGCTCTGAAGAGCTCCAGCCAAACGGAGCCCGCGG < 41bp 1 0.537418338813076 1 0.66068434715271 experiment 0.925163322373849 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBXN2A ENSG00000173960 UTR5 Human protein_coding chr2:24163437 chr2:24163433 . . 0 17 hm5C_associated_SNPs_3620 0 0 1 0 1 Ribosome 1 0.500231643921092 0.67863130569458 0.999536712157815 hm5C_site_6750 DeepMRMD:0.67863130569458;iRNA_m5C:0.999536712157815 6751 chr2 24163433 24163433 1 + G A rs112997568 24163438 + 24163418 24163458 41 GCTCCGGCTCTGAAGGGCTCCAGCCAAACGGAGCCCGCGGC GCTCCGGCTCTGAAGAGCTCCAGCCAAACGGAGCCCGCGGC < 41bp 1 0.629937399052404 1 0.715233325958252 experiment 0.740125201895192 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBXN2A ENSG00000173960 UTR5 Human protein_coding chr2:24163438 chr2:24163433 . . 0 16 hm5C_associated_SNPs_3621 0 0 1 0 1 Ribosome 1 0.500231643921122 0.569533348083496 0.999536712157756 hm5C_site_6751 DeepMRMD:0.569533348083496;iRNA_m5C:0.999536712157756 6752 chr2 24163433 24163433 1 + G A rs112997568 24163451 + 24163431 24163471 41 AGGGCTCCAGCCAAACGGAGCCCGCGGCCAAACGGTGCCTG AGAGCTCCAGCCAAACGGAGCCCGCGGCCAAACGGTGCCTG < 41bp 1 0.29239576199681 1 0.366005301475525 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBXN2A ENSG00000173960 UTR5 Human protein_coding chr2:24163451 chr2:24163433 . . 0 3 hm5C_associated_SNPs_3622 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6752 DeepMRMD:1;iRNA_m5C:0.999536712157815 6753 chr2 24163433 24163433 1 + G A rs112997568 24163452 + 24163432 24163472 41 GGGCTCCAGCCAAACGGAGCCCGCGGCCAAACGGTGCCTGC GAGCTCCAGCCAAACGGAGCCCGCGGCCAAACGGTGCCTGC < 41bp 1 0.570852003320246 1 0.697417974472046 experiment 0.858295993359508 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBXN2A ENSG00000173960 UTR5 Human protein_coding chr2:24163452 chr2:24163433 . . 0 2 hm5C_associated_SNPs_3623 0 0 1 0 1 Ribosome 1 0.500231728118833 0.605164051055908 0.999536543762334 hm5C_site_6753 DeepMRMD:0.605164051055908;iRNA_m5C:0.999536543762334 6754 chr2 24191899 24191899 1 + A C rs184521190 24191879 + 24191859 24191899 41 TTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGA TTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGC < 41bp 1 0.299974621191024 1 0.448801517486572 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBXN2A ENSG00000173960 intronic Human protein_coding chr2:24191879 chr2:24191899 . . 0 41 hm5C_associated_SNPs_3624 0 0 0 4 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6754 DeepMRMD:1;iRNA_m5C:0.999536712157815 6755 chr2 24276974 24276974 1 + C T rs190430161 24276975 + 24276955 24276995 41 CATCCTCTACTCCTCCCAGCCAGTCTAGTGGGAATGATAAA CATCCTCTACTCCTCCCAGTCAGTCTAGTGGGAATGATAAA < 41bp 1 0.141745464385507 1 0.692674219608307 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FKBP1B ENSG00000119782 CDS Human protein_coding chr2:24276975 chr2:24276974 nonsynonymous SNV . 0 20 hm5C_associated_SNPs_3625 0 0 1 0 2 nucleoplasm 1 0.500231643921092 0.614651560783386 0.999536712157815 hm5C_site_6755 DeepMRMD:0.614651560783386;iRNA_m5C:0.999536712157815 6756 chr2 24888621 24888621 1 + G A rs185518589 24888633 + 24888613 24888653 41 AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA AACAGCACAGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA < 41bp 1 0.257852171945238 1 0.586201786994934 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24888633 chr2:24888621 synonymous SNV . 0 9 hm5C_associated_SNPs_3626 0 0 1 0 1 Cytosol 1 0.500231603184252 0.827596426010132 0.999536793631496 hm5C_site_6756 DeepMRMD:0.827596426010132;iRNA_m5C:0.999536793631496 6757 chr2 26410279 26410279 1 + G A rs550188998 26410281 + 26410261 26410301 41 TCACAGAGCCTCTGAGCGGTCGAGCCGCCTCCCTTCTGGGG TCACAGAGCCTCTGAGCGATCGAGCCGCCTCCCTTCTGGGG < 41bp 1 0.522249667605175 1 0.855853676795959 experiment 0.95550066478965 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GAREM2 ENSG00000157833 CDS Human protein_coding chr2:26410281 chr2:26410279 nonsynonymous SNV 0.037 1 19 hm5C_associated_SNPs_3628 0 0 1 0 0 Exosome 1 0.500231643921092 0.288292646408082 0.999536712157816 hm5C_site_6757 DeepMRMD:0.288292646408082;iRNA_m5C:0.999536712157816 6758 chr2 27001607 27001607 1 + G T rs563479596 27001595 + 27001575 27001615 41 TGTTACCCAGCCCCCACAAGCCTGAGTGCAGTGGCAGACCT TGTTACCCAGCCCCCACAAGCCTGAGTGCAGTTGCAGACCT < 41bp 1 0.560793404331806 1 0.391825944185257 experiment 0.878413191336388 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27001595 chr2:27001607 . . 0 33 hm5C_associated_SNPs_3629 0 0 1 0 0 Ribosome 1 0.500231554540331 1 0.999536890919339 hm5C_site_6758 DeepMRMD:1;iRNA_m5C:0.999536890919339 6759 chr2 27001838 27001838 1 + C T rs571147004 27001846 + 27001826 27001866 41 GACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGC GACAGAGTCTCGTTCTGTCGCCCAGGCTGGAGTGCAGTGGC < 41bp 1 0.291273054342856 1 0.226670145988464 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27001846 chr2:27001838 . . 0 13 hm5C_associated_SNPs_3630 0 0 1 0 0 Ribosome 1 0.500231643889655 1 0.99953671222069 hm5C_site_6759 DeepMRMD:1;iRNA_m5C:0.99953671222069 6760 chr2 27001838 27001838 1 + C T rs571147004 27001847 + 27001827 27001867 41 ACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCA ACAGAGTCTCGTTCTGTCGCCCAGGCTGGAGTGCAGTGGCA < 41bp 1 0.276279912288633 1 0.413811832666397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27001847 chr2:27001838 . . 0 12 hm5C_associated_SNPs_3631 0 0 1 0 0 Ribosome 1 0.500231661460605 1 0.999536677078791 hm5C_site_6760 DeepMRMD:1;iRNA_m5C:0.999536677078791 6761 chr2 27001838 27001838 1 + C T rs571147004 27001848 + 27001828 27001868 41 CAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCAC CAGAGTCTCGTTCTGTCGCCCAGGCTGGAGTGCAGTGGCAC < 41bp 1 0.368271695566924 1 0.63376247882843 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27001848 chr2:27001838 . . 0 11 hm5C_associated_SNPs_3632 0 0 1 0 0 Ribosome 1 0.500231643673696 0.73247504234314 0.999536712652608 hm5C_site_6761 DeepMRMD:0.73247504234314;iRNA_m5C:0.999536712652608 6762 chr2 27001877 27001877 1 + C T rs116386619 27001860 + 27001840 27001880 41 CTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCGGC CTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGTGGC < 41bp 1 0.553934202614847 1 0.423260062932968 experiment 0.892131594770305 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27001860 chr2:27001877 . . 0 38 hm5C_associated_SNPs_3633 0 0 1 0 0 Ribosome 1 0.500231643887448 1 0.999536712225103 hm5C_site_6762 DeepMRMD:1;iRNA_m5C:0.999536712225103 6763 chr2 27001930 27001930 1 + T A rs573795706 27001929 + 27001909 27001949 41 AATGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTAC AATGATTCTCCTGCCTCAGCCACCCGAGTAGCTGGGATTAC < 41bp 1 0.205260912248306 1 0.28955751657486 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27001929 chr2:27001930 . . 0 22 hm5C_associated_SNPs_3634 0 0 0 0 0 Ribosome 1 0.500231642070744 1 0.999536715858511 hm5C_site_6763 DeepMRMD:1;iRNA_m5C:0.999536715858511 6764 chr2 27001930 27001930 1 + T A rs573795706 27001933 + 27001913 27001953 41 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGT ATTCTCCTGCCTCAGCCACCCGAGTAGCTGGGATTACAGGT < 41bp 1 0.455753952349049 1 0.59179550409317 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27001933 chr2:27001930 . . 0 18 hm5C_associated_SNPs_3635 0 0 0 0 0 Ribosome 1 0.49878505292427 0.81640899181366 1 hm5C_site_6764 DeepMRMD:0.81640899181366;iRNA_m5C:1 6765 chr2 27002655 27002655 1 + G A rs10193936 27002641 + 27002621 27002661 41 TGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGGTTACAG TGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.285835682387356 1 0.0703404247760773 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002641 chr2:27002655 . . 0 35 hm5C_associated_SNPs_3636 0 0 0 0 0 Ribosome 1 0.500231644386764 1 0.999536711226471 hm5C_site_6765 DeepMRMD:1;iRNA_m5C:0.999536711226471 6766 chr2 27002655 27002655 1 + G A rs10193936 27002642 + 27002622 27002662 41 GATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGGTTACAGG GATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.300346422536703 1 0.430385440587997 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002642 chr2:27002655 . . 0 34 hm5C_associated_SNPs_3637 0 0 0 0 0 Ribosome 1 0.500231644100932 1 0.999536711798137 hm5C_site_6766 DeepMRMD:1;iRNA_m5C:0.999536711798137 6767 chr2 27002655 27002655 1 + G A rs10193936 27002643 + 27002623 27002663 41 ATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGGTTACAGGC ATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGC < 41bp 1 0.448061227514015 1 0.468405961990356 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002643 chr2:27002655 . . 0 33 hm5C_associated_SNPs_3638 0 0 0 0 0 Ribosome 1 0.500231644748707 1 0.999536710502587 hm5C_site_6767 DeepMRMD:1;iRNA_m5C:0.999536710502587 6768 chr2 27002903 27002903 1 + G A rs189306643 27002919 + 27002899 27002939 41 TCCTGGCCTCAAGCGATCCTCCCATCTCAGCCTCCCAAAGT TCCTAGCCTCAAGCGATCCTCCCATCTCAGCCTCCCAAAGT < 41bp 1 0.186215746993529 1 0.0753414630889893 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002919 chr2:27002903 . . 0 5 hm5C_associated_SNPs_3641 0 0 0 0 0 Ribosome 1 0.500231643915041 1 0.999536712169917 hm5C_site_6768 DeepMRMD:1;iRNA_m5C:0.999536712169917 6769 chr2 27002903 27002903 1 + G A rs189306643 27002920 + 27002900 27002940 41 CCTGGCCTCAAGCGATCCTCCCATCTCAGCCTCCCAAAGTG CCTAGCCTCAAGCGATCCTCCCATCTCAGCCTCCCAAAGTG < 41bp 1 0.0912985864600342 1 0.134637266397476 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002920 chr2:27002903 . . 0 4 hm5C_associated_SNPs_3642 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6769 DeepMRMD:1;iRNA_m5C:0.999536712157815 6770 chr2 27002903 27002903 1 + G A rs189306643 27002921 + 27002901 27002941 41 CTGGCCTCAAGCGATCCTCCCATCTCAGCCTCCCAAAGTGC CTAGCCTCAAGCGATCCTCCCATCTCAGCCTCCCAAAGTGC < 41bp 1 0.150256305844939 1 0.063393622636795 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002921 chr2:27002903 . . 0 3 hm5C_associated_SNPs_3643 0 0 0 0 0 Ribosome 1 0.500231643927468 1 0.999536712145063 hm5C_site_6770 DeepMRMD:1;iRNA_m5C:0.999536712145063 6771 chr2 27002913 27002913 1 + G A rs552346984 27002919 + 27002899 27002939 41 TCCTGGCCTCAAGCGATCCTCCCATCTCAGCCTCCCAAAGT TCCTGGCCTCAAGCAATCCTCCCATCTCAGCCTCCCAAAGT < 41bp 1 0.19755013403168 1 0.0693095028400421 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002919 chr2:27002913 . . 0 15 hm5C_associated_SNPs_3644 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6771 DeepMRMD:1;iRNA_m5C:0.999536712157815 6772 chr2 27002913 27002913 1 + G A rs552346984 27002920 + 27002900 27002940 41 CCTGGCCTCAAGCGATCCTCCCATCTCAGCCTCCCAAAGTG CCTGGCCTCAAGCAATCCTCCCATCTCAGCCTCCCAAAGTG < 41bp 1 0.0746032593743248 1 0.109917223453522 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002920 chr2:27002913 . . 0 14 hm5C_associated_SNPs_3645 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6772 DeepMRMD:1;iRNA_m5C:0.999536712157815 6773 chr2 27002913 27002913 1 + G A rs552346984 27002921 + 27002901 27002941 41 CTGGCCTCAAGCGATCCTCCCATCTCAGCCTCCCAAAGTGC CTGGCCTCAAGCAATCCTCCCATCTCAGCCTCCCAAAGTGC < 41bp 1 0.129307907351453 1 0.0536185503005981 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002921 chr2:27002913 . . 0 13 hm5C_associated_SNPs_3646 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6773 DeepMRMD:1;iRNA_m5C:0.999536712157815 6774 chr2 27002913 27002913 1 + G A rs552346984 27002924 + 27002904 27002944 41 GCCTCAAGCGATCCTCCCATCTCAGCCTCCCAAAGTGCTGG GCCTCAAGCAATCCTCCCATCTCAGCCTCCCAAAGTGCTGG < 41bp 1 0.49593447481092 1 0.196629494428635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002924 chr2:27002913 . . 0 10 hm5C_associated_SNPs_3647 0 0 0 0 0 Ribosome 1 0.500231643920959 1 0.999536712158082 hm5C_site_6774 DeepMRMD:1;iRNA_m5C:0.999536712158082 6775 chr2 27002913 27002913 1 + G A rs552346984 27002926 + 27002906 27002946 41 CTCAAGCGATCCTCCCATCTCAGCCTCCCAAAGTGCTGGGA CTCAAGCAATCCTCCCATCTCAGCCTCCCAAAGTGCTGGGA < 41bp 1 0.552317282213723 1 0.382714152336121 experiment 0.895365435572553 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002926 chr2:27002913 . . 0 8 hm5C_associated_SNPs_3648 0 0 0 0 0 Ribosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_6775 DeepMRMD:1;iRNA_m5C:0.999536712157811 6776 chr2 27002913 27002913 1 + G A rs552346984 27002929 + 27002909 27002949 41 AAGCGATCCTCCCATCTCAGCCTCCCAAAGTGCTGGGATTA AAGCAATCCTCCCATCTCAGCCTCCCAAAGTGCTGGGATTA < 41bp 1 0.0433597734652844 1 0.23585432767868 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002929 chr2:27002913 . . 0 5 hm5C_associated_SNPs_3649 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_6776 DeepMRMD:1;iRNA_m5C:0.999536712157815 6777 chr2 27002913 27002913 1 + G A rs552346984 27002930 + 27002910 27002950 41 AGCGATCCTCCCATCTCAGCCTCCCAAAGTGCTGGGATTAC AGCAATCCTCCCATCTCAGCCTCCCAAAGTGCTGGGATTAC < 41bp 1 0.218485210675307 1 0.133078277111053 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002930 chr2:27002913 . . 0 4 hm5C_associated_SNPs_3650 0 0 0 0 0 Ribosome 1 0.500231643921123 1 0.999536712157753 hm5C_site_6777 DeepMRMD:1;iRNA_m5C:0.999536712157753 6778 chr2 27002913 27002913 1 + G A rs552346984 27002932 + 27002912 27002952 41 CGATCCTCCCATCTCAGCCTCCCAAAGTGCTGGGATTACAG CAATCCTCCCATCTCAGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.216520760737089 1 0.0494745671749115 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002932 chr2:27002913 . . 0 2 hm5C_associated_SNPs_3651 0 0 0 0 0 Ribosome 1 0.500231643921393 1 0.999536712157214 hm5C_site_6778 DeepMRMD:1;iRNA_m5C:0.999536712157214 6779 chr2 27002913 27002913 1 + G A rs552346984 27002933 + 27002913 27002953 41 GATCCTCCCATCTCAGCCTCCCAAAGTGCTGGGATTACAGA AATCCTCCCATCTCAGCCTCCCAAAGTGCTGGGATTACAGA < 41bp 1 0.311964042387159 1 0.18362358212471 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27002933 chr2:27002913 . . 0 1 hm5C_associated_SNPs_3652 0 0 0 0 0 Ribosome 1 0.500231643912748 1 0.999536712174503 hm5C_site_6779 DeepMRMD:1;iRNA_m5C:0.999536712174503 6780 chr2 27003194 27003194 1 + C T rs530109676 27003185 + 27003165 27003205 41 ACCCTCAGCTCCTGCAAGGACCTGGGGGACCCCCAGGTCCA ACCCTCAGCTCCTGCAAGGACCTGGGGGATCCCCAGGTCCA < 41bp 1 0.52007858466507 1 0.371006906032562 experiment 0.959842830669861 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27003185 chr2:27003194 . . 0 30 hm5C_associated_SNPs_3653 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6780 DeepMRMD:1;iRNA_m5C:0.999536712157815 6781 chr2 27003194 27003194 1 + C T rs530109676 27003196 + 27003176 27003216 41 CTGCAAGGACCTGGGGGACCCCCAGGTCCAGCAGCCACATG CTGCAAGGACCTGGGGGATCCCCAGGTCCAGCAGCCACATG < 41bp 1 0.593151730801781 1 0.151642143726349 experiment 0.813696538396437 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27003196 chr2:27003194 . . 0 19 hm5C_associated_SNPs_3654 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6781 DeepMRMD:1;iRNA_m5C:0.999536712157815 6782 chr2 27003194 27003194 1 + C T rs530109676 27003203 + 27003183 27003223 41 GACCTGGGGGACCCCCAGGTCCAGCAGCCACATGATTCTGC GACCTGGGGGATCCCCAGGTCCAGCAGCCACATGATTCTGC < 41bp 1 0.313521652082686 1 0.142264097929001 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC35F6 ENSG00000213699 UTR3 Human protein_coding chr2:27003203 chr2:27003194 . . 0 12 hm5C_associated_SNPs_3656 0 0 1 0 0 Ribosome 1 0.500231643921089 1 0.999536712157823 hm5C_site_6782 DeepMRMD:1;iRNA_m5C:0.999536712157823 6783 chr2 27273696 27273696 1 + C G rs186601168 27273681 + 27273661 27273701 41 TCAGTTGGTAGAGCGGAGGACTGTAGTGGATAGGGCGTGGC TCAGTTGGTAGAGCGGAGGACTGTAGTGGATAGGGGGTGGC < 41bp 1 0.592446158296169 1 0.165130198001862 experiment 0.815107683407663 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5;AGBL5-AS1 ENSG00000084693 intronic Human protein_coding chr2:27273681 chr2:27273696 . . 0 36 hm5C_associated_SNPs_3657 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6783 DeepMRMD:1;iRNA_m5C:0.999536712157815 6784 chr2 27273696 27273696 1 + C G rs186601168 27273701 + 27273681 27273721 41 CTGTAGTGGATAGGGCGTGGCAATCCTTAGGTCGCTGGTTC CTGTAGTGGATAGGGGGTGGCAATCCTTAGGTCGCTGGTTC < 41bp 1 0.166303241986046 1 0.30891752243042 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5;AGBL5-AS1 ENSG00000084693 intronic Human protein_coding chr2:27273701 chr2:27273696 . . 0 16 hm5C_associated_SNPs_3658 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6784 DeepMRMD:1;iRNA_m5C:0.999536712157815 6785 chr2 27273696 27273696 1 + C G rs186601168 27273705 + 27273685 27273725 41 AGTGGATAGGGCGTGGCAATCCTTAGGTCGCTGGTTCGATT AGTGGATAGGGGGTGGCAATCCTTAGGTCGCTGGTTCGATT < 41bp 1 0.277213406534341 1 0.199581533670425 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target AGBL5;AGBL5-AS1 ENSG00000084693 intronic Human protein_coding chr2:27273705 chr2:27273696 . . 0 12 hm5C_associated_SNPs_3659 0 0 1 0 0 unknown 1 0.500231643921124 1 0.999536712157752 hm5C_site_6785 DeepMRMD:1;iRNA_m5C:0.999536712157752 6786 chr2 27273696 27273696 1 + C G rs186601168 27273706 + 27273686 27273726 41 GTGGATAGGGCGTGGCAATCCTTAGGTCGCTGGTTCGATTC GTGGATAGGGGGTGGCAATCCTTAGGTCGCTGGTTCGATTC < 41bp 1 0.661979974680684 1 0.192621350288391 experiment 0.676040050638632 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5;AGBL5-AS1 ENSG00000084693 intronic Human protein_coding chr2:27273706 chr2:27273696 . . 0 11 hm5C_associated_SNPs_3660 0 0 1 0 0 unknown 1 0.500231643923821 1 0.999536712152358 hm5C_site_6786 DeepMRMD:1;iRNA_m5C:0.999536712152358 6787 chr2 27273696 27273696 1 + C G rs186601168 27273713 + 27273693 27273733 41 GGGCGTGGCAATCCTTAGGTCGCTGGTTCGATTCCGGCTCG GGGGGTGGCAATCCTTAGGTCGCTGGTTCGATTCCGGCTCG < 41bp 1 0.611287634006753 1 0.468057155609131 experiment 0.777424731986493 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5;AGBL5-AS1 ENSG00000084693 intronic Human protein_coding chr2:27273713 chr2:27273696 . . 0 4 hm5C_associated_SNPs_3661 0 0 1 0 0 unknown 1 0.500231638029312 1 0.999536723941376 hm5C_site_6787 DeepMRMD:1;iRNA_m5C:0.999536723941376 6788 chr2 27273696 27273696 1 + C G rs186601168 27273715 + 27273695 27273735 41 GCGTGGCAATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAA GGGTGGCAATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAA < 41bp 1 0.532162070515606 1 0.126632392406464 experiment 0.935675858968788 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control AGBL5;AGBL5-AS1 ENSG00000084693 intronic Human protein_coding chr2:27273715 chr2:27273696 . . 0 2 hm5C_associated_SNPs_3662 0 0 1 0 0 unknown 1 0.500231643894167 1 0.999536712211666 hm5C_site_6788 DeepMRMD:1;iRNA_m5C:0.999536712211666 6789 chr2 27274097 27274097 1 + A C rs62130539 27274094 + 27274074 27274114 41 CAGCAGGCGGGGGATTAGCTCAAATGGTAGAGCGCTCGCTT CAGCAGGCGGGGGATTAGCTCAACTGGTAGAGCGCTCGCTT < 41bp 1 0.54069016712841 1 0.343141108751297 experiment 0.918619665743179 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5;AGBL5-AS1 ENSG00000084693 intronic Human protein_coding chr2:27274094 chr2:27274097 . . 0 24 hm5C_associated_SNPs_3663 0 0 1 0 0 unknown 1 0.50023164392219 1 0.99953671215562 hm5C_site_6789 DeepMRMD:1;iRNA_m5C:0.99953671215562 6790 chr2 27274535 27274535 1 + C G rs531629424 27274546 + 27274526 27274566 41 GTTTCCTGGCAGAGCGGGGTCCCGGCACCGCGGCGCTCGGG GTTTCCTGGGAGAGCGGGGTCCCGGCACCGCGGCGCTCGGG < 41bp 1 0.648909926025451 1 0.538470029830933 experiment 0.702180147949097 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGBL5 ENSG00000084693 UTR5 Human protein_coding chr2:27274546 chr2:27274535 . . 0 10 hm5C_associated_SNPs_3664 0 0 1 0 0 Cytosol 1 0.500231643921093 0.923059940338134 0.999536712157814 hm5C_site_6790 DeepMRMD:0.923059940338134;iRNA_m5C:0.999536712157814 6791 chr2 27274535 27274535 1 + C G rs531629424 27274547 + 27274527 27274567 41 TTTCCTGGCAGAGCGGGGTCCCGGCACCGCGGCGCTCGGGT TTTCCTGGGAGAGCGGGGTCCCGGCACCGCGGCGCTCGGGT < 41bp 1 0.42035444491824 1 0.496864825487137 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGBL5 ENSG00000084693 UTR5 Human protein_coding chr2:27274547 chr2:27274535 . . 0 9 hm5C_associated_SNPs_3665 0 0 1 0 0 Cytosol 1 0.500231643921127 1 0.999536712157745 hm5C_site_6791 DeepMRMD:1;iRNA_m5C:0.999536712157745 6792 chr2 27274535 27274535 1 + C G rs531629424 27274551 + 27274531 27274571 41 CTGGCAGAGCGGGGTCCCGGCACCGCGGCGCTCGGGTGTTT CTGGGAGAGCGGGGTCCCGGCACCGCGGCGCTCGGGTGTTT < 41bp 1 0.696575241227278 1 0.451280951499939 experiment 0.606849517545444 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGBL5 ENSG00000084693 UTR5 Human protein_coding chr2:27274551 chr2:27274535 . . 0 5 hm5C_associated_SNPs_3666 0 0 1 0 0 Cytosol 1 0.500231514299908 1 0.999536971400183 hm5C_site_6792 DeepMRMD:1;iRNA_m5C:0.999536971400183 6793 chr2 27274551 27274551 1 + C T rs562717893 27274546 + 27274526 27274566 41 GTTTCCTGGCAGAGCGGGGTCCCGGCACCGCGGCGCTCGGG GTTTCCTGGCAGAGCGGGGTCCCGGTACCGCGGCGCTCGGG < 41bp 1 0.681835851027284 1 0.325359702110291 experiment 0.636328297945431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGBL5 ENSG00000084693 UTR5 Human protein_coding chr2:27274546 chr2:27274551 . . 0 26 hm5C_associated_SNPs_3667 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6793 DeepMRMD:1;iRNA_m5C:0.999536712157815 6794 chr2 27274551 27274551 1 + C T rs562717893 27274547 + 27274527 27274567 41 TTTCCTGGCAGAGCGGGGTCCCGGCACCGCGGCGCTCGGGT TTTCCTGGCAGAGCGGGGTCCCGGTACCGCGGCGCTCGGGT < 41bp 1 0.451072106199956 1 0.448059052228928 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGBL5 ENSG00000084693 UTR5 Human protein_coding chr2:27274547 chr2:27274551 . . 0 25 hm5C_associated_SNPs_3668 0 0 1 0 0 Cytosol 1 0.500231643787488 1 0.999536712425024 hm5C_site_6794 DeepMRMD:1;iRNA_m5C:0.999536712425024 6795 chr2 27292989 27292989 1 + G A rs140335340 27292979 + 27292959 27292999 41 GGCTGCCTCAGGCCAGGCCCCCACGGCCCCGCTCTGCCCCT GGCTGCCTCAGGCCAGGCCCCCACGGCCCCACTCTGCCCCT < 41bp 1 0.379712985508673 1 0.424928426742554 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27292979 chr2:27292989 nonsynonymous SNV 0.998 0 31 hm5C_associated_SNPs_3670 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6795 DeepMRMD:1;iRNA_m5C:0.999536712157815 6796 chr2 27302056 27302056 1 + C T rs201008654 27302048 + 27302028 27302068 41 ACACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAG ACACAGGTTCCAGTGGGGCCCTCAGCCCTGGGGGGCCCCAG < 41bp 1 0.533904171847983 1 0.201965898275375 experiment 0.932191656304034 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302048 chr2:27302056 synonymous SNV . 0 29 hm5C_associated_SNPs_3671 0 0 1 0 1 Cytosol 1 0.500231715060119 1 0.999536569879762 hm5C_site_6796 DeepMRMD:1;iRNA_m5C:0.999536569879762 6797 chr2 27302056 27302056 1 + C T rs201008654 27302063 + 27302043 27302083 41 GGGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCC GGGCCCTCAGCCCTGGGGGGCCCCAGGCCCAGATTGCCCCC < 41bp 1 0.354743006478125 1 0.221380829811096 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302063 chr2:27302056 synonymous SNV . 0 14 hm5C_associated_SNPs_3672 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6797 DeepMRMD:1;iRNA_m5C:0.999536712157815 6798 chr2 27302056 27302056 1 + C T rs201008654 27302064 + 27302044 27302084 41 GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC GGCCCTCAGCCCTGGGGGGCCCCAGGCCCAGATTGCCCCCC < 41bp 1 0.321225450645426 1 0.557114839553833 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302064 chr2:27302056 synonymous SNV . 0 13 hm5C_associated_SNPs_3673 0 0 1 0 1 Cytosol 1 0.500231643921092 0.885770320892334 0.999536712157815 hm5C_site_6798 DeepMRMD:0.885770320892334;iRNA_m5C:0.999536712157815 6799 chr2 27302056 27302056 1 + C T rs201008654 27302065 + 27302045 27302085 41 GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG GCCCTCAGCCCTGGGGGGCCCCAGGCCCAGATTGCCCCCCG < 41bp 1 0.607516998700239 1 0.682278692722321 experiment 0.784966002599521 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302065 chr2:27302056 synonymous SNV . 0 12 hm5C_associated_SNPs_3674 0 0 1 0 1 Cytosol 1 0.500231643921092 0.635442614555358 0.999536712157815 hm5C_site_6799 DeepMRMD:0.635442614555358;iRNA_m5C:0.999536712157815 6800 chr2 27302056 27302056 1 + C T rs201008654 27302066 + 27302046 27302086 41 CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG CCCTCAGCCCTGGGGGGCCCCAGGCCCAGATTGCCCCCCGG < 41bp 1 0.627791342740807 1 0.879024803638458 experiment 0.744417314518386 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302066 chr2:27302056 synonymous SNV . 0 11 hm5C_associated_SNPs_3675 0 0 1 0 1 Cytosol 1 0.500231643921094 0.241950392723084 0.999536712157812 hm5C_site_6800 DeepMRMD:0.241950392723084;iRNA_m5C:0.999536712157812 6801 chr2 27440785 27440785 1 + C T rs1275536 27440789 + 27440769 27440809 41 ACCCCGAGGCCCTCACCGATCCCTCCTACAAGGCACAGATC ACCCCGAGGCCCTCACTGATCCCTCCTACAAGGCACAGATC < 41bp 1 0.0535751343117121 1 0.112846612930298 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27440789 chr2:27440785 synonymous SNV . 0 17 hm5C_associated_SNPs_3677 0 0 1 0 1 Exosome 1 0.500231643921274 1 0.999536712157453 hm5C_site_6801 DeepMRMD:1;iRNA_m5C:0.999536712157453 6802 chr2 27449440 27449440 1 + G A rs61737363 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTAGCCAGTAAGGCCACAGGTTATCCACTGGCTT < 41bp 1 0.133846054452972 1 0.153986573219299 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449440 synonymous SNV . 0 10 hm5C_associated_SNPs_3678 0 0 1 0 2 Exosome 1 0.500231643920949 1 0.999536712158102 hm5C_site_6802 DeepMRMD:1;iRNA_m5C:0.999536712158102 6803 chr2 27455023 27455023 1 + C T rs144292695 27455031 + 27455011 27455051 41 GACAGCCTTTGCCGCCAGACCTGCTGCAACAGGCCAAGTGT GACAGCCTTTGCTGCCAGACCTGCTGCAACAGGCCAAGTGT < 41bp 1 0.291253393264137 1 0.455658972263336 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27455031 chr2:27455023 nonsynonymous SNV 0.065 3 13 hm5C_associated_SNPs_3679 0 0 1 0 1 Exosome 1 0.500231699879947 1 0.999536600240106 hm5C_site_6803 DeepMRMD:1;iRNA_m5C:0.999536600240106 6804 chr2 27455024 27455024 1 + G A rs147159197 27455031 + 27455011 27455051 41 GACAGCCTTTGCCGCCAGACCTGCTGCAACAGGCCAAGTGT GACAGCCTTTGCCACCAGACCTGCTGCAACAGGCCAAGTGT < 41bp 1 0.249184722081254 1 0.271042287349701 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27455031 chr2:27455024 synonymous SNV . 0 14 hm5C_associated_SNPs_3680 0 0 1 0 1 Exosome 1 0.500231699472186 1 0.999536601055627 hm5C_site_6804 DeepMRMD:1;iRNA_m5C:0.999536601055627 6805 chr2 27456275 27456275 1 + G A rs143119049 27456273 + 27456253 27456293 41 ACATGGCCATGGCGTTGCATCGGCAGCAGTGCCGGGTGCTG ACATGGCCATGGCGTTGCATCGACAGCAGTGCCGGGTGCTG < 41bp 1 0.66698876781562 1 0.585732281208038 experiment 0.666022464368759 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27456273 chr2:27456275 synonymous SNV . 0 23 hm5C_associated_SNPs_3681 0 0 1 0 1 Exosome 1 0.500231643921083 0.828535437583924 0.999536712157833 hm5C_site_6805 DeepMRMD:0.828535437583924;iRNA_m5C:0.999536712157833 6806 chr2 28616493 28616493 1 + G A rs141199785 28616479 + 28616459 28616499 41 CCCAGGAGCGAAGCCCAGAGCCCGCGGCGCGGCCGGCGGAC CCCAGGAGCGAAGCCCAGAGCCCGCGGCGCGGCCAGCGGAC < 41bp 1 0.490110385591854 1 0.224784195423126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLJ31356 ENSG00000229951 ncRNA_intronic Human antisense chr2:28616479 chr2:28616493 . . 0 35 hm5C_associated_SNPs_3682 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_6806 DeepMRMD:1;iRNA_m5C:0.999536712157815 6807 chr2 28616493 28616493 1 + G A rs141199785 28616480 + 28616460 28616500 41 CCAGGAGCGAAGCCCAGAGCCCGCGGCGCGGCCGGCGGACG CCAGGAGCGAAGCCCAGAGCCCGCGGCGCGGCCAGCGGACG < 41bp 1 0.563608489127437 1 0.747519373893738 experiment 0.872783021745126 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLJ31356 ENSG00000229951 ncRNA_intronic Human antisense chr2:28616480 chr2:28616493 . . 0 34 hm5C_associated_SNPs_3683 0 0 0 0 0 unknown 1 0.500231643921092 0.504961252212524 0.999536712157817 hm5C_site_6807 DeepMRMD:0.504961252212524;iRNA_m5C:0.999536712157817 6808 chr2 28616493 28616493 1 + G A rs141199785 28616486 + 28616466 28616506 41 GCGAAGCCCAGAGCCCGCGGCGCGGCCGGCGGACGAACGAG GCGAAGCCCAGAGCCCGCGGCGCGGCCAGCGGACGAACGAG < 41bp 1 0.67318491216411 1 0.773702919483185 experiment 0.653630175671781 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLJ31356 ENSG00000229951 ncRNA_intronic Human antisense chr2:28616486 chr2:28616493 . . 0 28 hm5C_associated_SNPs_3685 0 0 0 0 0 unknown 1 0.500231643615304 0.45259416103363 0.999536712769391 hm5C_site_6808 DeepMRMD:0.45259416103363;iRNA_m5C:0.999536712769391 6809 chr2 28616493 28616493 1 + G A rs141199785 28616488 + 28616468 28616508 41 GAAGCCCAGAGCCCGCGGCGCGGCCGGCGGACGAACGAGCG GAAGCCCAGAGCCCGCGGCGCGGCCAGCGGACGAACGAGCG < 41bp 1 0.365967889145383 1 0.408488065004349 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLJ31356 ENSG00000229951 ncRNA_intronic Human antisense chr2:28616488 chr2:28616493 . . 0 26 hm5C_associated_SNPs_3686 0 0 0 0 0 unknown 1 0.500231642851362 1 0.999536714297276 hm5C_site_6809 DeepMRMD:1;iRNA_m5C:0.999536714297276 6810 chr2 28616493 28616493 1 + G A rs141199785 28616491 + 28616471 28616511 41 GCCCAGAGCCCGCGGCGCGGCCGGCGGACGAACGAGCGCGC GCCCAGAGCCCGCGGCGCGGCCAGCGGACGAACGAGCGCGC < 41bp 1 0.37919101072946 1 0.496316581964493 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLJ31356 ENSG00000229951 ncRNA_intronic Human antisense chr2:28616491 chr2:28616493 . . 0 23 hm5C_associated_SNPs_3687 0 0 0 0 0 unknown 1 0.500231643919798 1 0.999536712160404 hm5C_site_6810 DeepMRMD:1;iRNA_m5C:0.999536712160404 6811 chr2 28974746 28974746 1 + C T rs559818092 28974764 + 28974744 28974784 41 CGCGGCCCTGTTCGAGGGGGCCTCTCTTGTTTATTTATTTA CGTGGCCCTGTTCGAGGGGGCCTCTCTTGTTTATTTATTTA < 41bp 1 0.0573679767623553 1 0.0473597347736359 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1CB ENSG00000213639 UTR5 Human protein_coding chr2:28974764 chr2:28974746 . . 0 3 hm5C_associated_SNPs_3688 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6811 DeepMRMD:1;iRNA_m5C:0.999536712157815 6812 chr2 29022959 29022959 1 + T C rs11687800 29022948 + 29022928 29022968 41 GCATTTCATTTAAGATAAGGCTCATATAGTATTACCCAACT GCATTTCATTTAAGATAAGGCTCATATAGTACTACCCAACT < 41bp 1 0.241653150299009 1 0.0931990742683411 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP1CB ENSG00000213639 UTR3 Human protein_coding chr2:29022948 chr2:29022959 . . 0 32 hm5C_associated_SNPs_3689 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_6812 DeepMRMD:1;iRNA_m5C:0.999536712157815 6813 chr2 29149948 29149948 1 + C T rs139731773 29149964 + 29149944 29149984 41 ACATCCATATGGTTTCGCTGCTGGCTGAGTTTCAGAGATGA ACATTCATATGGTTTCGCTGCTGGCTGAGTTTCAGAGATGA < 41bp 1 0.21551835914659 1 0.29418408870697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD53 ENSG00000265145 ncRNA_exonic Human snoRNA chr2:29149964 chr2:29149948 . . 0 5 hm5C_associated_SNPs_3690 0 0 1 5 0 unknown 1 0.500231919000658 1 0.999536161998685 hm5C_site_6813 DeepMRMD:1;iRNA_m5C:0.999536161998685 6814 chr2 29150877 29150877 1 + C T rs147877573 29150884 + 29150864 29150904 41 TCATTGGGTTTCGCATGTTGCTGAGTTCCAGTGATGCCTCT TCATTGGGTTTCGTATGTTGCTGAGTTCCAGTGATGCCTCT < 41bp 1 0.470594803093198 1 0.319303631782532 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD53B ENSG00000265706 ncRNA_exonic Human snoRNA chr2:29150884 chr2:29150877 . . 0 14 hm5C_associated_SNPs_3691 0 0 1 0 0 unknown 1 0.500231644000326 1 0.999536711999348 hm5C_site_6814 DeepMRMD:1;iRNA_m5C:0.999536711999348 6815 chr2 29150926 29150926 1 + A G rs546145183 29150924 + 29150904 29150944 41 TTTTCTCTTGGCTGTCTGAGCAATCCTGGCTAACCTAGTGC TTTTCTCTTGGCTGTCTGAGCAGTCCTGGCTAACCTAGTGC < 41bp 1 0.0693039317223043 1 0.32476007938385 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD53B ENSG00000265706 ncRNA_exonic Human snoRNA chr2:29150924 chr2:29150926 . . 0 23 hm5C_associated_SNPs_3692 0 0 1 0 0 unknown 1 0.500231647052 1 0.999536705895999 hm5C_site_6815 DeepMRMD:1;iRNA_m5C:0.999536705895999 6816 chr2 29159814 29159814 1 + T C rs145420330 29159809 + 29159789 29159829 41 TTACAAAGAGGTTACAAGGACATCCTAATAGGTAAGATTAA TTACAAAGAGGTTACAAGGACATCCCAATAGGTAAGATTAA < 41bp 1 0.0740293481823461 1 0.190014392137527 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 CDS Human protein_coding chr2:29159809 chr2:29159814 synonymous SNV . 0 26 hm5C_associated_SNPs_3693 0 0 1 0 2 Ribosome 1 0.500234121253614 1 0.999531757492771 hm5C_site_6816 DeepMRMD:1;iRNA_m5C:0.999531757492771 6817 chr2 29170124 29170124 1 + G A rs538253184 29170105 + 29170085 29170125 41 TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAGG TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAAG < 41bp 1 0.0362242182462955 1 0.0260713398456573 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 UTR3 Human protein_coding chr2:29170105 chr2:29170124 . . 0 40 hm5C_associated_SNPs_3694 0 0 1 3 0 Ribosome 1 0.500231643914907 1 0.999536712170186 hm5C_site_6817 DeepMRMD:1;iRNA_m5C:0.999536712170186 6818 chr2 29170125 29170125 1 + G A rs188446761 29170105 + 29170085 29170125 41 TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAGG TTAGTACATTTAATTTGGTACATTTTCATAAAATATGAAGA < 41bp 1 0.0334350688698403 1 0.0280688107013702 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 UTR3 Human protein_coding chr2:29170105 chr2:29170125 . . 0 41 hm5C_associated_SNPs_3695 0 0 1 3 0 Ribosome 1 0.500231643921117 1 0.999536712157766 hm5C_site_6818 DeepMRMD:1;iRNA_m5C:0.999536712157766 6819 chr2 30370432 30370432 1 + T G rs546877240 30370420 + 30370400 30370440 41 GCCCGGTCTCCGCCCCGAATCCAAGTCGGAACTTGACCGAG GCCCGGTCTCCGCCCCGAATCCAAGTCGGAACGTGACCGAG < 41bp 1 0.54860933061203 1 0.847477734088898 experiment 0.902781338775939 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control YPEL5 ENSG00000119801 UTR5 Human protein_coding chr2:30370420 chr2:30370432 . . 0 33 hm5C_associated_SNPs_3696 0 0 0 0 0 Cytosol 1 0.500231645392584 0.305044531822204 0.999536709214831 hm5C_site_6819 DeepMRMD:0.305044531822204;iRNA_m5C:0.999536709214831 6820 chr2 30454462 30454462 1 + C T rs578189843 30454454 + 30454434 30454474 41 CACCTTGCCGACGTCGCTAGCCGTGGGGCTGTCCTGGGAAG CACCTTGCCGACGTCGCTAGCCGTGGGGTTGTCCTGGGAAG < 41bp 1 0.441634336789836 1 0.165527433156967 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LBH ENSG00000213626 UTR5 Human protein_coding chr2:30454454 chr2:30454462 . . 0 29 hm5C_associated_SNPs_3697 0 0 1 0 0 Nucleus 1 0.500231643939914 1 0.999536712120173 hm5C_site_6820 DeepMRMD:1;iRNA_m5C:0.999536712120173 6821 chr2 32446324 32446324 1 + G C rs147693192 32446342 + 32446322 32446362 41 GAGTTCAAATGATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GACTTCAAATGATTCTCCTGCCTCAGCCTCCCGAGTAGCTG < 41bp 1 0.278051578434811 1 0.0546789169311523 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC30A6 ENSG00000152683 UTR3 Human protein_coding chr2:32446342 chr2:32446324 . . 0 3 hm5C_associated_SNPs_3698 0 0 0 0 0 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_6821 DeepMRMD:1;iRNA_m5C:0.999536712157813 6822 chr2 32446324 32446324 1 + G C rs147693192 32446343 + 32446323 32446363 41 AGTTCAAATGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGG ACTTCAAATGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGG < 41bp 1 0.695844286033082 1 0.256953656673431 experiment 0.608311427933836 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC30A6 ENSG00000152683 UTR3 Human protein_coding chr2:32446343 chr2:32446324 . . 0 2 hm5C_associated_SNPs_3699 0 0 0 0 0 Ribosome 1 0.500231643921041 1 0.999536712157918 hm5C_site_6822 DeepMRMD:1;iRNA_m5C:0.999536712157918 6823 chr2 32446353 32446353 1 + C T rs142581037 32446342 + 32446322 32446362 41 GAGTTCAAATGATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GAGTTCAAATGATTCTCCTGCCTCAGCCTCCTGAGTAGCTG < 41bp 1 0.301139470201756 1 0.051642119884491 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC30A6 ENSG00000152683 UTR3 Human protein_coding chr2:32446342 chr2:32446353 . . 0 32 hm5C_associated_SNPs_3700 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6823 DeepMRMD:1;iRNA_m5C:0.999536712157815 6824 chr2 32446353 32446353 1 + C T rs142581037 32446343 + 32446323 32446363 41 AGTTCAAATGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGG AGTTCAAATGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGG < 41bp 1 0.622752834053669 1 0.227886945009232 experiment 0.754494331892662 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC30A6 ENSG00000152683 UTR3 Human protein_coding chr2:32446343 chr2:32446353 . . 0 31 hm5C_associated_SNPs_3701 0 0 0 0 0 Ribosome 1 0.500231639563729 1 0.999536720872541 hm5C_site_6824 DeepMRMD:1;iRNA_m5C:0.999536720872541 6825 chr2 32446353 32446353 1 + C T rs142581037 32446345 + 32446325 32446365 41 TTCAAATGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGA TTCAAATGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGA < 41bp 1 0.565088821994102 1 0.559750974178314 experiment 0.869822356011796 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SLC30A6 ENSG00000152683 UTR3 Human protein_coding chr2:32446345 chr2:32446353 . . 0 29 hm5C_associated_SNPs_3702 0 0 0 0 0 Ribosome 1 0.500231643888803 0.880498051643372 0.999536712222393 hm5C_site_6825 DeepMRMD:0.880498051643372;iRNA_m5C:0.999536712222393 6826 chr2 32446353 32446353 1 + C T rs142581037 32446348 + 32446328 32446368 41 AAATGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTA AAATGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTA < 41bp 1 0.113389144110483 1 0.149754136800766 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SLC30A6 ENSG00000152683 UTR3 Human protein_coding chr2:32446348 chr2:32446353 . . 0 26 hm5C_associated_SNPs_3703 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6826 DeepMRMD:1;iRNA_m5C:0.999536712157815 6827 chr2 32446353 32446353 1 + C T rs142581037 32446349 + 32446329 32446369 41 AATGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTAC AATGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTAC < 41bp 1 0.495025135685402 1 0.562447369098663 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SLC30A6 ENSG00000152683 UTR3 Human protein_coding chr2:32446349 chr2:32446353 . . 0 25 hm5C_associated_SNPs_3704 0 0 0 0 0 Ribosome 1 0.500231643389438 0.875105261802674 0.999536713221123 hm5C_site_6827 DeepMRMD:0.875105261802674;iRNA_m5C:0.999536713221123 6828 chr2 32446353 32446353 1 + C T rs142581037 32446351 + 32446331 32446371 41 TGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAG TGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG < 41bp 1 0.464697686071999 1 0.130192577838898 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SLC30A6 ENSG00000152683 UTR3 Human protein_coding chr2:32446351 chr2:32446353 . . 0 23 hm5C_associated_SNPs_3705 0 0 0 0 0 Ribosome 1 0.500231614975592 1 0.999536770048816 hm5C_site_6828 DeepMRMD:1;iRNA_m5C:0.999536770048816 6829 chr2 32446353 32446353 1 + C T rs142581037 32446352 + 32446332 32446372 41 GATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGG GATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGG < 41bp 1 0.60051041342475 1 0.331099033355713 experiment 0.798979173150501 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SLC30A6 ENSG00000152683 UTR3 Human protein_coding chr2:32446352 chr2:32446353 . . 0 22 hm5C_associated_SNPs_3706 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6829 DeepMRMD:1;iRNA_m5C:0.999536712157815 6830 chr2 32446353 32446353 1 + C T rs142581037 32446373 + 32446353 32446393 41 CGAGTAGCTGGGATTACAGGCACCTGCCACCACGCCCAGCT TGAGTAGCTGGGATTACAGGCACCTGCCACCACGCCCAGCT < 41bp 1 0.471624074220259 1 0.280719816684723 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SLC30A6 ENSG00000152683 UTR3 Human protein_coding chr2:32446373 chr2:32446353 . . 0 1 hm5C_associated_SNPs_3707 0 0 0 0 0 Ribosome 1 0.500231636111435 1 0.999536727777131 hm5C_site_6830 DeepMRMD:1;iRNA_m5C:0.999536727777131 6831 chr2 32724715 32724715 1 + C G rs150127918 32724730 + 32724710 32724750 41 TATTTCTGCCGTGATAGAATCGGTTACATTTTTAGTGCACC TATTTGTGCCGTGATAGAATCGGTTACATTTTTAGTGCACC < 41bp 1 0.0508168956668169 1 0.219418168067932 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32724730 chr2:32724715 nonsynonymous SNV 0.999 2 6 hm5C_associated_SNPs_3708 0 0 1 0 0 Nucleus 1 0.500231643920997 1 0.999536712158007 hm5C_site_6831 DeepMRMD:1;iRNA_m5C:0.999536712158007 6832 chr2 32773012 32773012 1 + T C rs142781350 32773028 + 32773008 32773048 41 CTTCTGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGG CTTCCGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGG < 41bp 1 0.156035733090535 1 0.433984160423279 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773028 chr2:32773012 synonymous SNV . 0 5 hm5C_associated_SNPs_3709 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6832 DeepMRMD:1;iRNA_m5C:0.999536712157815 6833 chr2 33706278 33706278 1 + G C rs569573093 33706275 + 33706255 33706295 41 GTTTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCACGATC GTTTCACTCTGTCGCCCAGGCTGCAGTGCAGTGGCACGATC < 41bp 1 0.620663938320459 1 0.32966822385788 experiment 0.758672123359083 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASGRP3 ENSG00000152689 UTR5 Human protein_coding chr2:33706275 chr2:33706278 . . 0 24 hm5C_associated_SNPs_3710 0 0 0 0 1 cytosol 1 0.500228413467508 1 0.999543173064984 hm5C_site_6833 DeepMRMD:1;iRNA_m5C:0.999543173064984 6834 chr2 33706278 33706278 1 + G C rs569573093 33706283 + 33706263 33706303 41 CTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCA CTGTCGCCCAGGCTGCAGTGCAGTGGCACGATCTCGGCTCA < 41bp 1 0.454981289188873 1 0.616784930229187 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RASGRP3 ENSG00000152689 UTR5 Human protein_coding chr2:33706283 chr2:33706278 . . 0 16 hm5C_associated_SNPs_3711 0 0 0 0 1 cytosol 1 0.500231451547106 0.766430139541626 0.999537096905788 hm5C_site_6834 DeepMRMD:0.766430139541626;iRNA_m5C:0.999537096905788 6835 chr2 37458862 37458862 1 + T C rs141773676 37458880 + 37458860 37458900 41 GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG GCCGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG < 41bp 1 0.541138385059934 1 0.116649478673935 experiment 0.917723229880132 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458880 chr2:37458862 nonsynonymous SNV 0.001 1 3 hm5C_associated_SNPs_3714 0 0 1 0 1 chromatin 1 0.497731118328434 1 1 hm5C_site_6835 DeepMRMD:1;iRNA_m5C:1 6836 chr2 37458885 37458885 1 + T G rs530133541 37458880 + 37458860 37458900 41 GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG GCTGAGGTCAGGTTTGGGGCCGTTGGGTGCCGTGGCGCGCG < 41bp 1 0.637927312562941 1 0.291138112545013 experiment 0.724145374874117 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458880 chr2:37458885 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_3715 0 0 1 0 1 chromatin 1 0.500231643623851 1 0.999536712752297 hm5C_site_6836 DeepMRMD:1;iRNA_m5C:0.999536712752297 6837 chr2 37458898 37458898 1 + G A rs72875762 37458880 + 37458860 37458900 41 GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCACG < 41bp 1 0.54852481694585 1 0.08832186460495 experiment 0.9029503661083 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458880 chr2:37458898 nonsynonymous SNV 0.006 2 39 hm5C_associated_SNPs_3716 1 0 1 0 1 chromatin 1 0.500225987536097 1 0.999548024927805 hm5C_site_6837 DeepMRMD:1;iRNA_m5C:0.999548024927805 not specified not specified 6838 chr2 37475339 37475339 1 + T A rs369731209 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATAAGTTAATGAATCCAAAGAAGATGGGAGAGAGA < 41bp 1 0.367111687344792 1 0.595303356647491 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475339 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_3717 0 0 1 1 1 chromatin 1 0.500231605272931 0.809393286705018 0.999536789454138 hm5C_site_6838 DeepMRMD:0.809393286705018;iRNA_m5C:0.999536789454138 6839 chr2 37475339 37475339 1 + T A rs369731209 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATAAGTTAATGAATCCAAAGAAGATGGGAGAGAGAT < 41bp 1 0.38002884041131 1 0.3550044298172 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475339 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_3718 0 0 1 1 1 chromatin 1 0.500231643920401 1 0.999536712159197 hm5C_site_6839 DeepMRMD:1;iRNA_m5C:0.999536712159197 6840 chr2 39008949 39008949 1 + G A rs1056104 39008951 + 39008931 39008971 41 CTATAGACCCACCATATGGTCCAGAAAATTGCAGCAGCTCT CTATAGACCCACCATATGATCCAGAAAATTGCAGCAGCTCT < 41bp 1 0.587147997000752 1 0.39697128534317 experiment 0.825704005998495 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008951 chr2:39008949 nonsynonymous SNV 0.949 0 19 hm5C_associated_SNPs_3719 0 0 1 3 0 Ribosome 1 0.500243680129653 1 0.999512639740694 hm5C_site_6840 DeepMRMD:1;iRNA_m5C:0.999512639740694 6841 chr2 39009025 39009025 1 + T A rs149539286 39009029 + 39009009 39009049 41 AAGGACATCTTACAGCTTCCCAATGAGAGGCCAGGAAGTGT AAGGACATCTTACAGCATCCCAATGAGAGGCCAGGAAGTGT < 41bp 1 0.222815128600718 1 0.173330694437027 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39009029 chr2:39009025 synonymous SNV . 0 17 hm5C_associated_SNPs_3720 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6841 DeepMRMD:1;iRNA_m5C:0.999536712157815 6842 chr2 39664597 39664597 1 + G A rs188536328 39664578 + 39664558 39664598 41 CGCGTTCCGGCTCCGCGCGCCTGCCAGGCCGGGGCCGGCGG CGCGTTCCGGCTCCGCGCGCCTGCCAGGCCGGGGCCGGCAG < 41bp 1 0.603139698481566 1 0.176165014505386 experiment 0.793720603036868 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LOC728730 ENSG00000231312 ncRNA_exonic Human antisense chr2:39664578 chr2:39664597 . . 0 40 hm5C_associated_SNPs_3721 0 0 1 0 1 unknown 1 0.500232602798588 1 0.999534794402825 hm5C_site_6842 DeepMRMD:1;iRNA_m5C:0.999534794402825 Childhood onset ulcerative colitis 6843 chr2 42275661 42275661 1 + C T rs557784874 42275675 + 42275655 42275695 41 CGGCCCCTGTCCGACGGCGCCCCAGGCTGGCCCCCGGCTCC CGGCCCTTGTCCGACGGCGCCCCAGGCTGGCCCCCGGCTCC < 41bp 1 0.643241900379569 1 0.417932003736496 experiment 0.713516199240862 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKDCC ENSG00000162878 CDS Human protein_coding chr2:42275675 chr2:42275661 synonymous SNV . 0 7 hm5C_associated_SNPs_3723 0 0 1 0 0 chromatin 1 0.500231643920872 1 0.999536712158257 hm5C_site_6843 DeepMRMD:1;iRNA_m5C:0.999536712158257 6844 chr2 42275664 42275664 1 + T C rs187184761 42275675 + 42275655 42275695 41 CGGCCCCTGTCCGACGGCGCCCCAGGCTGGCCCCCGGCTCC CGGCCCCTGCCCGACGGCGCCCCAGGCTGGCCCCCGGCTCC < 41bp 1 0.655081399302508 1 0.541249632835388 experiment 0.689837201394985 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKDCC ENSG00000162878 CDS Human protein_coding chr2:42275675 chr2:42275664 nonsynonymous SNV 0.905 0 10 hm5C_associated_SNPs_3726 0 0 1 0 0 chromatin 1 0.500231643920964 0.917500734329224 0.999536712158073 hm5C_site_6844 DeepMRMD:0.917500734329224;iRNA_m5C:0.999536712158073 6845 chr2 43037731 43037731 1 + C A rs548826986 43037717 + 43037697 43037737 41 AGCGCGCGGTACTTATACAGCAGTACATGCAGAGCAATGCC AGCGCGCGGTACTTATACAGCAGTACATGCAGAGAAATGCC < 41bp 1 0.559629595342849 1 0.203029364347458 experiment 0.880740809314302 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HAAO;LINC01819 ENSG00000226491;ENSG00000232202 intergenic Human other chr2:43037717 chr2:43037731 . . 0 35 hm5C_associated_SNPs_3728 0 0 1 0 0 unknown 1 0.500231645598125 1 0.999536708803749 hm5C_site_6845 DeepMRMD:1;iRNA_m5C:0.999536708803749 6846 chr2 43037731 43037731 1 + C A rs548826986 43037736 + 43037716 43037756 41 GCAGTACATGCAGAGCAATGCCGAGGTTGTGAGTTCGAGCC GCAGTACATGCAGAGAAATGCCGAGGTTGTGAGTTCGAGCC < 41bp 1 0.53604635893899 1 0.491112470626831 experiment 0.927907282122021 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HAAO;LINC01819 ENSG00000226491;ENSG00000232202 intergenic Human other chr2:43037736 chr2:43037731 . . 0 16 hm5C_associated_SNPs_3729 0 0 1 0 0 unknown 1 0.500208075428626 1 0.999583849142748 hm5C_site_6846 DeepMRMD:1;iRNA_m5C:0.999583849142748 6847 chr2 43037731 43037731 1 + C A rs548826986 43037751 + 43037731 43037771 41 CAATGCCGAGGTTGTGAGTTCGAGCCTCACCTGGAGCAAGA AAATGCCGAGGTTGTGAGTTCGAGCCTCACCTGGAGCAAGA < 41bp 1 0.504205302776251 1 0.322270393371582 experiment 0.991589394447498 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HAAO;LINC01819 ENSG00000226491;ENSG00000232202 intergenic Human other chr2:43037751 chr2:43037731 . . 0 1 hm5C_associated_SNPs_3730 0 0 1 0 0 unknown 1 0.500231572085986 1 0.999536855828028 hm5C_site_6847 DeepMRMD:1;iRNA_m5C:0.999536855828028 6848 chr2 45879080 45879080 1 + G T rs537845343 45879100 + 45879080 45879120 41 GCCCGCGCCAGGGCGCAACGCCACAAGGTGTAGGGAGTGTG TCCCGCGCCAGGGCGCAACGCCACAAGGTGTAGGGAGTGTG < 41bp 1 0.302307984513498 1 0.0598897337913513 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCE ENSG00000171132 UTR5 Human protein_coding chr2:45879100 chr2:45879080 . . 0 1 hm5C_associated_SNPs_3732 0 0 0 0 0 chromatin 1 0.500231625424038 1 0.999536749151924 hm5C_site_6848 DeepMRMD:1;iRNA_m5C:0.999536749151924 6849 chr2 45879106 45879106 1 + G A rs11889760 45879100 + 45879080 45879120 41 GCCCGCGCCAGGGCGCAACGCCACAAGGTGTAGGGAGTGTG GCCCGCGCCAGGGCGCAACGCCACAAAGTGTAGGGAGTGTG < 41bp 1 0.3298603954244 1 0.0809709429740906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCE ENSG00000171132 UTR5 Human protein_coding chr2:45879100 chr2:45879106 . . 0 27 hm5C_associated_SNPs_3733 0 0 0 0 0 chromatin 1 0.500231252013829 1 0.999537495972343 hm5C_site_6849 DeepMRMD:1;iRNA_m5C:0.999537495972343 6850 chr2 46612707 46612707 1 + G A rs546157125 46612697 + 46612677 46612717 41 CAGTGCTCCCACGGCCTGTACGGACACTGTGGAAGGCCTCC CAGTGCTCCCACGGCCTGTACGGACACTGTAGAAGGCCTCC < 41bp 1 0.28059301560399 1 0.254287600517273 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612697 chr2:46612707 . . 0 31 hm5C_associated_SNPs_3735 0 0 1 1 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6850 DeepMRMD:1;iRNA_m5C:0.999536712157815 6851 chr2 46612707 46612707 1 + G A rs546157125 46612713 + 46612693 46612733 41 TGTACGGACACTGTGGAAGGCCTCCCTCTGTCGGCTTTTTG TGTACGGACACTGTAGAAGGCCTCCCTCTGTCGGCTTTTTG < 41bp 1 0.040641550817985 1 0.0147075057029724 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612713 chr2:46612707 . . 0 15 hm5C_associated_SNPs_3737 0 0 1 1 0 Cytosol 1 0.500231990129351 1 0.999536019741298 hm5C_site_6851 DeepMRMD:1;iRNA_m5C:0.999536019741298 6852 chr2 46612707 46612707 1 + G A rs546157125 46612714 + 46612694 46612734 41 GTACGGACACTGTGGAAGGCCTCCCTCTGTCGGCTTTTTGC GTACGGACACTGTAGAAGGCCTCCCTCTGTCGGCTTTTTGC < 41bp 1 0.205685357255955 1 0.0533459782600403 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612714 chr2:46612707 . . 0 14 hm5C_associated_SNPs_3738 0 0 1 1 0 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_6852 DeepMRMD:1;iRNA_m5C:0.99953671215782 6853 chr2 46612707 46612707 1 + G A rs546157125 46612716 + 46612696 46612736 41 ACGGACACTGTGGAAGGCCTCCCTCTGTCGGCTTTTTGCCA ACGGACACTGTAGAAGGCCTCCCTCTGTCGGCTTTTTGCCA < 41bp 1 0.101728485046165 1 0.0736076831817627 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612716 chr2:46612707 . . 0 12 hm5C_associated_SNPs_3739 0 0 1 1 0 Cytosol 1 0.500231643921051 1 0.999536712157897 hm5C_site_6853 DeepMRMD:1;iRNA_m5C:0.999536712157897 6854 chr2 46612707 46612707 1 + G A rs546157125 46612717 + 46612697 46612737 41 CGGACACTGTGGAAGGCCTCCCTCTGTCGGCTTTTTGCCAT CGGACACTGTAGAAGGCCTCCCTCTGTCGGCTTTTTGCCAT < 41bp 1 0.170168816984008 1 0.0290047824382782 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612717 chr2:46612707 . . 0 11 hm5C_associated_SNPs_3740 0 0 1 1 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6854 DeepMRMD:1;iRNA_m5C:0.999536712157815 6855 chr2 46612707 46612707 1 + G A rs546157125 46612718 + 46612698 46612738 41 GGACACTGTGGAAGGCCTCCCTCTGTCGGCTTTTTGCCATC GGACACTGTAGAAGGCCTCCCTCTGTCGGCTTTTTGCCATC < 41bp 1 0.481145072356663 1 0.171768695116043 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612718 chr2:46612707 . . 0 10 hm5C_associated_SNPs_3741 0 0 1 1 0 Cytosol 1 0.500231643920513 1 0.999536712158974 hm5C_site_6855 DeepMRMD:1;iRNA_m5C:0.999536712158974 6856 chr2 46612707 46612707 1 + G A rs546157125 46612720 + 46612700 46612740 41 ACACTGTGGAAGGCCTCCCTCTGTCGGCTTTTTGCCATCTG ACACTGTAGAAGGCCTCCCTCTGTCGGCTTTTTGCCATCTG < 41bp 1 0.359162579693769 1 0.385078310966492 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612720 chr2:46612707 . . 0 8 hm5C_associated_SNPs_3742 0 0 1 1 0 Cytosol 1 0.500231643922444 1 0.999536712155112 hm5C_site_6856 DeepMRMD:1;iRNA_m5C:0.999536712155112 6857 chr2 46612707 46612707 1 + G A rs546157125 46612724 + 46612704 46612744 41 TGTGGAAGGCCTCCCTCTGTCGGCTTTTTGCCATCTGTGAT TGTAGAAGGCCTCCCTCTGTCGGCTTTTTGCCATCTGTGAT < 41bp 1 0.621957300197359 1 0.724633693695068 experiment 0.756085399605281 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612724 chr2:46612707 . . 0 4 hm5C_associated_SNPs_3743 0 0 1 1 0 Cytosol 1 0.500231643922522 0.550732612609864 0.999536712154955 hm5C_site_6857 DeepMRMD:0.550732612609864;iRNA_m5C:0.999536712154955 6858 chr2 46612707 46612707 1 + G A rs546157125 46612727 + 46612707 46612747 41 GGAAGGCCTCCCTCTGTCGGCTTTTTGCCATCTGTGATATG AGAAGGCCTCCCTCTGTCGGCTTTTTGCCATCTGTGATATG < 41bp 1 0.0524949134346308 1 0.0168508589267731 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612727 chr2:46612707 . . 0 1 hm5C_associated_SNPs_3744 0 0 1 1 0 Cytosol 1 0.500231643921247 1 0.999536712157507 hm5C_site_6858 DeepMRMD:1;iRNA_m5C:0.999536712157507 6859 chr2 46612797 46612797 1 + G A rs74562492 46612778 + 46612758 46612798 41 GACAATCCGAGCAGTGGAGTCATTCAGCGGGAGCACTGCGC GACAATCCGAGCAGTGGAGTCATTCAGCGGGAGCACTGCAC < 41bp 1 0.106406209955959 1 0.0481317341327667 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612778 chr2:46612797 . . 0 40 hm5C_associated_SNPs_3745 0 0 1 0 0 Cytosol 1 0.500231640335116 1 0.999536719329768 hm5C_site_6859 DeepMRMD:1;iRNA_m5C:0.999536719329768 6860 chr2 46612797 46612797 1 + G A rs74562492 46612791 + 46612771 46612811 41 GTGGAGTCATTCAGCGGGAGCACTGCGCGCTATCCCCTCAC GTGGAGTCATTCAGCGGGAGCACTGCACGCTATCCCCTCAC < 41bp 1 0.295457656779519 1 0.24131053686142 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612791 chr2:46612797 . . 0 27 hm5C_associated_SNPs_3746 0 0 1 0 0 Cytosol 1 0.500231702898951 1 0.999536594202098 hm5C_site_6860 DeepMRMD:1;iRNA_m5C:0.999536594202098 6861 chr2 46612797 46612797 1 + G A rs74562492 46612793 + 46612773 46612813 41 GGAGTCATTCAGCGGGAGCACTGCGCGCTATCCCCTCACAT GGAGTCATTCAGCGGGAGCACTGCACGCTATCCCCTCACAT < 41bp 1 0.631203489991217 1 0.588499307632446 experiment 0.737593020017566 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612793 chr2:46612797 . . 0 25 hm5C_associated_SNPs_3747 0 0 1 0 0 Cytosol 1 0.500231644803171 0.823001384735108 0.999536710393658 hm5C_site_6861 DeepMRMD:0.823001384735108;iRNA_m5C:0.999536710393658 6862 chr2 46612797 46612797 1 + G A rs74562492 46612796 + 46612776 46612816 41 GTCATTCAGCGGGAGCACTGCGCGCTATCCCCTCACATTCT GTCATTCAGCGGGAGCACTGCACGCTATCCCCTCACATTCT < 41bp 1 0.483743124844069 1 0.180527746677399 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612796 chr2:46612797 . . 0 22 hm5C_associated_SNPs_3748 0 0 1 0 0 Cytosol 1 0.500231644077389 1 0.999536711845222 hm5C_site_6862 DeepMRMD:1;iRNA_m5C:0.999536711845222 6863 chr2 46612797 46612797 1 + G A rs74562492 46612798 + 46612778 46612818 41 CATTCAGCGGGAGCACTGCGCGCTATCCCCTCACATTCTCT CATTCAGCGGGAGCACTGCACGCTATCCCCTCACATTCTCT < 41bp 1 0.460659753448081 1 0.0801478028297424 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612798 chr2:46612797 . . 0 20 hm5C_associated_SNPs_3749 0 0 1 0 0 Cytosol 1 0.500231643923035 1 0.99953671215393 hm5C_site_6863 DeepMRMD:1;iRNA_m5C:0.99953671215393 6864 chr2 46612797 46612797 1 + G A rs74562492 46612800 + 46612780 46612820 41 TTCAGCGGGAGCACTGCGCGCTATCCCCTCACATTCTCTAT TTCAGCGGGAGCACTGCACGCTATCCCCTCACATTCTCTAT < 41bp 1 0.147595792017156 1 0.0382672548294067 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612800 chr2:46612797 . . 0 18 hm5C_associated_SNPs_3750 0 0 1 0 0 Cytosol 1 0.500231645693829 1 0.999536708612343 hm5C_site_6864 DeepMRMD:1;iRNA_m5C:0.999536708612343 6865 chr2 46612797 46612797 1 + G A rs74562492 46612804 + 46612784 46612824 41 GCGGGAGCACTGCGCGCTATCCCCTCACATTCTCTATGTAC GCGGGAGCACTGCACGCTATCCCCTCACATTCTCTATGTAC < 41bp 1 0.129228617245964 1 0.141416072845459 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612804 chr2:46612797 . . 0 14 hm5C_associated_SNPs_3751 0 0 1 0 0 Cytosol 1 0.500231653278127 1 0.999536693443746 hm5C_site_6865 DeepMRMD:1;iRNA_m5C:0.999536693443746 6866 chr2 46612797 46612797 1 + G A rs74562492 46612805 + 46612785 46612825 41 CGGGAGCACTGCGCGCTATCCCCTCACATTCTCTATGTACT CGGGAGCACTGCACGCTATCCCCTCACATTCTCTATGTACT < 41bp 1 0.0195186459967183 1 0.0445503294467926 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612805 chr2:46612797 . . 0 13 hm5C_associated_SNPs_3752 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6866 DeepMRMD:1;iRNA_m5C:0.999536712157815 6867 chr2 46612797 46612797 1 + G A rs74562492 46612806 + 46612786 46612826 41 GGGAGCACTGCGCGCTATCCCCTCACATTCTCTATGTACTA GGGAGCACTGCACGCTATCCCCTCACATTCTCTATGTACTA < 41bp 1 0.155394508821934 1 0.124418079853058 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612806 chr2:46612797 . . 0 12 hm5C_associated_SNPs_3753 0 0 1 0 0 Cytosol 1 0.500231643921095 1 0.99953671215781 hm5C_site_6867 DeepMRMD:1;iRNA_m5C:0.99953671215781 6868 chr2 46612797 46612797 1 + G A rs74562492 46612807 + 46612787 46612827 41 GGAGCACTGCGCGCTATCCCCTCACATTCTCTATGTACTAT GGAGCACTGCACGCTATCCCCTCACATTCTCTATGTACTAT < 41bp 1 0.13009205804753 1 0.0480668246746063 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 UTR3 Human protein_coding chr2:46612807 chr2:46612797 . . 0 11 hm5C_associated_SNPs_3754 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_6868 DeepMRMD:1;iRNA_m5C:0.999536712157816 6869 chr2 48026159 48026159 1 + C G rs567785169 48026173 + 48026153 48026193 41 AAAATTCTGAATCCCAAGCCCACGTTAGTGGAGGTGGTGAT AAAATTGTGAATCCCAAGCCCACGTTAGTGGAGGTGGTGAT < 41bp 1 0.481014051426111 1 0.118831276893616 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MSH6 ENSG00000116062 CDS Human protein_coding chr2:48026173 chr2:48026159 nonsynonymous SNV 0.443 1 7 hm5C_associated_SNPs_3755 2 0 1 0 0 Nucleus 1 0.500231644171988 1 0.999536711656024 hm5C_site_6869 DeepMRMD:1;iRNA_m5C:0.999536711656024 Lynch syndrome Lynch syndrome 6870 chr2 48027755 48027755 1 + T C rs2020912 48027758 + 48027738 48027778 41 AGGGATCATGGAAGAAGTTGCTGATGGTTTTAAGTCTAAAA AGGGATCATGGAAGAAGCTGCTGATGGTTTTAAGTCTAAAA < 41bp 1 0.186620827903589 1 0.066417008638382 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSH6 ENSG00000116062 CDS Human protein_coding chr2:48027758 chr2:48027755 nonsynonymous SNV 0.259 1 18 hm5C_associated_SNPs_3756 6 0 1 0 0 Nucleus 1 0.500231688516697 1 0.999536622966606 hm5C_site_6870 DeepMRMD:1;iRNA_m5C:0.999536622966606 Hereditary nonpolyposis colorectal cancer type 5 Hereditary nonpolyposis colorectal cancer type 5 6871 chr2 54858664 54858664 1 + C T rs2229503 54858649 + 54858629 54858669 41 ACTGGATGGAACGAGCTCCACAAGATGTGGGAGAACAGACA ACTGGATGGAACGAGCTCCACAAGATGTGGGAGAATAGACA < 41bp 1 0.61431605880134 1 0.511878490447998 experiment 0.77136788239732 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858649 chr2:54858664 synonymous SNV . 0 36 hm5C_associated_SNPs_3757 0 0 1 0 1 Nucleus 1 0.500231036649569 0.976243019104004 0.999537926700861 hm5C_site_6871 DeepMRMD:0.976243019104004;iRNA_m5C:0.999537926700861 6872 chr2 54885159 54885159 1 + C T rs190911566 54885175 + 54885155 54885195 41 GGTTCTCTGCCCTGGAAAGGCTGACTACAGTAAGTGGCCGC GGTTTTCTGCCCTGGAAAGGCTGACTACAGTAAGTGGCCGC < 41bp 1 0.282238560430761 1 0.199776470661163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54885175 chr2:54885159 synonymous SNV . 0 5 hm5C_associated_SNPs_3758 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6872 DeepMRMD:1;iRNA_m5C:0.999536712157815 6873 chr2 54886335 54886335 1 + G A rs140377991 54886315 + 54886295 54886335 41 AGTTACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGG AGTTACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGA < 41bp 1 0.611331472017298 1 0.747583031654358 experiment 0.777337055965404 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886315 chr2:54886335 synonymous SNV . 0 41 hm5C_associated_SNPs_3759 0 0 1 0 2 Nucleus 1 0.50023164392333 0.504833936691284 0.99953671215334 hm5C_site_6873 DeepMRMD:0.504833936691284;iRNA_m5C:0.99953671215334 6874 chr2 55191144 55191144 1 + T G rs534776499 55191153 + 55191133 55191173 41 CAAGGTGAGCTTGGGCCATGCGGCCAGGTGTGCAGCCTACA CAAGGTGAGCTGGGGCCATGCGGCCAGGTGTGCAGCCTACA < 41bp 1 0.297998269265467 1 0.603720307350159 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55191153 chr2:55191144 nonsynonymous SNV 0.997 3 12 hm5C_associated_SNPs_3761 0 0 1 0 1 cytosol 1 0.500231643930614 0.792559385299682 0.999536712138771 hm5C_site_6874 DeepMRMD:0.792559385299682;iRNA_m5C:0.999536712138771 6875 chr2 55459923 55459923 1 + C G rs543843126 55459912 + 55459892 55459932 41 CTTCTCTTGTGATCCCTGACCTAACCTGTCTCTTCCTTTTC CTTCTCTTGTGATCCCTGACCTAACCTGTCTGTTCCTTTTC < 41bp 1 0.113225115996386 1 0.0645709335803986 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS27A ENSG00000143947 UTR5 Human protein_coding chr2:55459912 chr2:55459923 . . 0 32 hm5C_associated_SNPs_3763 0 0 1 0 1 Ribosome 1 0.499929411344245 1 1 hm5C_site_6875 DeepMRMD:1;iRNA_m5C:1 6876 chr2 55459927 55459927 1 + C G rs192298313 55459912 + 55459892 55459932 41 CTTCTCTTGTGATCCCTGACCTAACCTGTCTCTTCCTTTTC CTTCTCTTGTGATCCCTGACCTAACCTGTCTCTTCGTTTTC < 41bp 1 0.0943114472216594 1 0.0570149123668671 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS27A ENSG00000143947 UTR5 Human protein_coding chr2:55459912 chr2:55459927 . . 0 36 hm5C_associated_SNPs_3764 0 0 1 0 1 Ribosome 1 0.500231887271453 1 0.999536225457093 hm5C_site_6876 DeepMRMD:1;iRNA_m5C:0.999536225457093 6877 chr2 55461991 55461991 1 + A C rs2230613 55461971 + 55461951 55461991 41 ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGA ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGC < 41bp 1 0.167641328353461 1 0.072692334651947 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461971 chr2:55461991 synonymous SNV . 0 41 hm5C_associated_SNPs_3765 0 0 1 3 1 Ribosome 1 0.500231645268104 1 0.999536709463791 hm5C_site_6877 DeepMRMD:1;iRNA_m5C:0.999536709463791 6878 chr2 55461991 55461991 1 + A C rs2230613 55461974 + 55461954 55461994 41 CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGAC CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGCGAC < 41bp 1 0.135783132053706 1 0.136200338602066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461974 chr2:55461991 synonymous SNV . 0 38 hm5C_associated_SNPs_3766 0 0 1 3 1 Ribosome 1 0.500228728337762 1 0.999542543324476 hm5C_site_6878 DeepMRMD:1;iRNA_m5C:0.999542543324476 6879 chr2 55461991 55461991 1 + A C rs2230613 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTCTTCATCTTGTGTTGCGACTTCGT < 41bp 1 0.184577844500369 1 0.0366038382053375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461991 synonymous SNV . 0 33 hm5C_associated_SNPs_3767 0 0 1 3 1 Ribosome 1 0.500231643454038 1 0.999536713091925 hm5C_site_6879 DeepMRMD:1;iRNA_m5C:0.999536713091925 6880 chr2 55461991 55461991 1 + A C rs2230613 55462007 + 55461987 55462027 41 GTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT GTTGCGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT < 41bp 1 0.381594366282405 1 0.206069052219391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55462007 chr2:55461991 synonymous SNV . 0 5 hm5C_associated_SNPs_3768 0 0 1 3 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6880 DeepMRMD:1;iRNA_m5C:0.999536712157815 6881 chr2 60987375 60987375 1 + A G rs140672094 60987390 + 60987370 60987410 41 AATTAATTGACGCCATGAAACCATTTGGAGTGTTTGAAGAT AATTAGTTGACGCCATGAAACCATTTGGAGTGTTTGAAGAT < 41bp 1 0.086795965076582 1 0.0692794322967529 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLG ENSG00000115421 CDS Human protein_coding chr2:60987390 chr2:60987375 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_3769 0 0 1 0 1 chromatin 1 0.500231643921193 1 0.999536712157614 hm5C_site_6881 DeepMRMD:1;iRNA_m5C:0.999536712157614 6882 chr2 61349807 61349807 1 + A G rs150390047 61349799 + 61349779 61349819 41 GCATGAATATTAAGGAGTGACAGGTCTCAAGACTGCATTAA GCATGAATATTAAGGAGTGACAGGTCTCGAGACTGCATTAA < 41bp 1 0.618117657247085 1 0.394179344177246 experiment 0.763764685505829 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1841 ENSG00000162929 UTR3 Human protein_coding chr2:61349799 chr2:61349807 . . 0 29 hm5C_associated_SNPs_3770 0 0 1 0 0 cytosol 1 0.500231694481048 1 0.999536611037903 hm5C_site_6882 DeepMRMD:1;iRNA_m5C:0.999536611037903 6883 chr2 61349807 61349807 1 + A G rs150390047 61349814 + 61349794 61349834 41 AGTGACAGGTCTCAAGACTGCATTAAATGAAGTTTCAGGGT AGTGACAGGTCTCGAGACTGCATTAAATGAAGTTTCAGGGT < 41bp 1 0.398987067155275 1 0.196727067232132 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1841 ENSG00000162929 UTR3 Human protein_coding chr2:61349814 chr2:61349807 . . 0 14 hm5C_associated_SNPs_3772 0 0 1 0 0 cytosol 1 0.500231671886865 1 0.99953665622627 hm5C_site_6883 DeepMRMD:1;iRNA_m5C:0.99953665622627 6884 chr2 63284022 63284022 1 + G A rs574062953 63284015 + 63283995 63284035 41 GCCTCCCGGCGTTTCTTCCGCCCCAGCGGAGTGCGCTGGGG GCCTCCCGGCGTTTCTTCCGCCCCAGCAGAGTGCGCTGGGG < 41bp 1 0.640468554220679 1 0.400256931781769 experiment 0.719062891558642 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OTX1 ENSG00000115507 UTR3 Human protein_coding chr2:63284015 chr2:63284022 . . 0 28 hm5C_associated_SNPs_3773 0 0 1 0 0 nucleoplasm 1 0.500231643921093 1 0.999536712157815 hm5C_site_6884 DeepMRMD:1;iRNA_m5C:0.999536712157815 6885 chr2 63834111 63834111 1 + C T rs142463350 63834096 + 63834076 63834116 41 GACAGAAGAAAAAGAAAGTGCTTTTGAATTTCTTTCCTCTG GACAGAAGAAAAAGAAAGTGCTTTTGAATTTCTTTTCTCTG < 41bp 1 0.056039727286488 1 0.0401997268199921 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MDH1 ENSG00000014641 CDS Human protein_coding chr2:63834096 chr2:63834111 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_3776 0 0 1 0 0 Cytosol 1 0.500231654247893 1 0.999536691504214 hm5C_site_6885 DeepMRMD:1;iRNA_m5C:0.999536691504214 6886 chr2 64118444 64118444 1 + C G rs142367970 64118438 + 64118418 64118458 41 CTCTAGGATTCTAAAATAGGCAGGTACTTTACTATGTTACT CTCTAGGATTCTAAAATAGGCAGGTAGTTTACTATGTTACT < 41bp 1 0.518156188960672 1 0.181580394506454 experiment 0.963687622078657 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UGP2 ENSG00000169764 UTR3 Human protein_coding chr2:64118438 chr2:64118444 . . 0 27 hm5C_associated_SNPs_3777 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6886 DeepMRMD:1;iRNA_m5C:0.999536712157815 6887 chr2 65299964 65299964 1 + G A rs146568738 65299976 + 65299956 65299996 41 AGCAGCCAGGCCCTCGGGGTCTCCTCTGGACTGCTGAAAAC AGCAGCCAAGCCCTCGGGGTCTCCTCTGGACTGCTGAAAAC < 41bp 1 0.397259592803196 1 0.561366319656372 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP68 ENSG00000011523 CDS Human protein_coding chr2:65299976 chr2:65299964 synonymous SNV . 0 9 hm5C_associated_SNPs_3778 0 0 0 0 0 Cytosol 1 0.5002317706412 0.877267360687256 0.9995364587176 hm5C_site_6887 DeepMRMD:0.877267360687256;iRNA_m5C:0.9995364587176 6888 chr2 65299988 65299988 1 + G A rs141305652 65299976 + 65299956 65299996 41 AGCAGCCAGGCCCTCGGGGTCTCCTCTGGACTGCTGAAAAC AGCAGCCAGGCCCTCGGGGTCTCCTCTGGACTACTGAAAAC < 41bp 1 0.449467972877444 1 0.476949542760849 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP68 ENSG00000011523 CDS Human protein_coding chr2:65299976 chr2:65299988 synonymous SNV . 0 33 hm5C_associated_SNPs_3779 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6888 DeepMRMD:1;iRNA_m5C:0.999536712157815 6889 chr2 69474859 69474859 1 + A G rs77329712 69474860 + 69474840 69474880 41 TGACTGCTGGCAGTCTAAAACAGTCCACCCACCCCATGGCA TGACTGCTGGCAGTCTAAAGCAGTCCACCCACCCCATGGCA < 41bp 1 0.323876814739713 1 0.856588363647461 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANTXR1 ENSG00000169604 UTR3 Human protein_coding chr2:69474860 chr2:69474859 . . 0 20 hm5C_associated_SNPs_3780 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.286823272705078 0.999536712157815 hm5C_site_6889 DeepMRMD:0.286823272705078;iRNA_m5C:0.999536712157815 6890 chr2 70096862 70096862 1 + T C rs114517801 70096880 + 70096860 70096900 41 CGTTGGACAGGTTTTAACTTCGGCTTCGACCTACTTGTAAC CGCTGGACAGGTTTTAACTTCGGCTTCGACCTACTTGTAAC < 41bp 1 0.548753839690961 1 0.378552049398422 experiment 0.902492320618079 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096880 chr2:70096862 synonymous SNV . 0 3 hm5C_associated_SNPs_3781 0 0 1 0 1 Cytosol 1 0.500231643921098 1 0.999536712157804 hm5C_site_6890 DeepMRMD:1;iRNA_m5C:0.999536712157804 6891 chr2 70096978 70096978 1 + G A rs61756683 70096964 + 70096944 70096984 41 CAGCCATGTAGCGGATCTGTCAGTTTACAGCCTCGAAGGAG CAGCCATGTAGCGGATCTGTCAGTTTACAGCCTCAAAGGAG < 41bp 1 0.376177829723441 1 0.203588545322418 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096964 chr2:70096978 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_3782 0 0 1 0 1 Cytosol 1 0.500231626370008 1 0.999536747259984 hm5C_site_6891 DeepMRMD:1;iRNA_m5C:0.999536747259984 6892 chr2 70315987 70315987 1 + C T rs11545482 70315996 + 70315976 70316016 41 TCTGCTGTTCTCCCATGATCCAACTGTGTAATTTCTGGTCA TCTGCTGTTCTTCCATGATCCAACTGTGTAATTTCTGGTCA < 41bp 1 0.452214121223972 1 0.72550356388092 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PCBP1 ENSG00000169564 UTR3 Human protein_coding chr2:70315996 chr2:70315987 . . 0 12 hm5C_associated_SNPs_3784 0 0 1 0 0 Cytosol 1 0.500231662197245 0.54899287223816 0.999536675605509 hm5C_site_6892 DeepMRMD:0.54899287223816;iRNA_m5C:0.999536675605509 6893 chr2 70505162 70505162 1 + C G rs76039898 70505163 + 70505143 70505183 41 CCGGTTTGAAGTACGTGTGCCCATGCCTAAAGCCTTGACTT CCGGTTTGAAGTACGTGTGGCCATGCCTAAAGCCTTGACTT < 41bp 1 0.101266078467869 1 0.0630798041820526 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCYOX1 ENSG00000116005 UTR3 Human protein_coding chr2:70505163 chr2:70505162 . . 0 20 hm5C_associated_SNPs_3785 0 0 1 0 0 Ribosome 1 0.500231634040861 1 0.999536731918278 hm5C_site_6893 DeepMRMD:1;iRNA_m5C:0.999536731918278 6894 chr2 70505162 70505162 1 + C G rs76039898 70505164 + 70505144 70505184 41 CGGTTTGAAGTACGTGTGCCCATGCCTAAAGCCTTGACTTT CGGTTTGAAGTACGTGTGGCCATGCCTAAAGCCTTGACTTT < 41bp 1 0.168841671631779 1 0.302183747291565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCYOX1 ENSG00000116005 UTR3 Human protein_coding chr2:70505164 chr2:70505162 . . 0 19 hm5C_associated_SNPs_3786 0 0 1 0 0 Ribosome 1 0.50023164386599 1 0.99953671226802 hm5C_site_6894 DeepMRMD:1;iRNA_m5C:0.99953671226802 6895 chr2 70506626 70506626 1 + G T rs117059146 70506615 + 70506595 70506635 41 TATATTTTTACTTATAATACCAATTTAGGCTGGGCGCAGTG TATATTTTTACTTATAATACCAATTTAGGCTTGGCGCAGTG < 41bp 1 0.212352020303568 1 0.163623869419098 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCYOX1 ENSG00000116005 UTR3 Human protein_coding chr2:70506615 chr2:70506626 . . 0 32 hm5C_associated_SNPs_3787 0 0 1 0 0 Ribosome 1 0.500231477072297 1 0.999537045855406 hm5C_site_6895 DeepMRMD:1;iRNA_m5C:0.999537045855406 6896 chr2 70506629 70506629 1 + C A rs114392010 70506615 + 70506595 70506635 41 TATATTTTTACTTATAATACCAATTTAGGCTGGGCGCAGTG TATATTTTTACTTATAATACCAATTTAGGCTGGGAGCAGTG < 41bp 1 0.187669873745803 1 0.138414353132248 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCYOX1 ENSG00000116005 UTR3 Human protein_coding chr2:70506615 chr2:70506629 . . 0 35 hm5C_associated_SNPs_3788 0 0 1 0 0 Ribosome 1 0.500231644033237 1 0.999536711933525 hm5C_site_6896 DeepMRMD:1;iRNA_m5C:0.999536711933525 6897 chr2 70506630 70506630 1 + G A rs115193128 70506615 + 70506595 70506635 41 TATATTTTTACTTATAATACCAATTTAGGCTGGGCGCAGTG TATATTTTTACTTATAATACCAATTTAGGCTGGGCACAGTG < 41bp 1 0.205998526851484 1 0.124457478523254 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCYOX1 ENSG00000116005 UTR3 Human protein_coding chr2:70506615 chr2:70506630 . . 0 36 hm5C_associated_SNPs_3789 0 0 1 0 0 Ribosome 1 0.500231643919582 1 0.999536712160836 hm5C_site_6897 DeepMRMD:1;iRNA_m5C:0.999536712160836 6898 chr2 71297695 71297695 1 + T C rs2287328 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGACGGACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.631106540093751 1 0.358749747276306 experiment 0.737786919812498 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297695 synonymous SNV . 0 12 hm5C_associated_SNPs_3791 0 0 1 2 2 chromatin 1 0.500231644666981 1 0.999536710666038 hm5C_site_6898 DeepMRMD:1;iRNA_m5C:0.999536710666038 6899 chr2 71780248 71780248 1 + C T rs35721373 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA TGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA < 41bp 1 0.152049953931463 1 0.0116254687309265 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780248 synonymous SNV . 0 1 hm5C_associated_SNPs_3792 3 0 0 0 1 Nucleus 1 0.500231643921123 1 0.999536712157754 hm5C_site_6899 DeepMRMD:1;iRNA_m5C:0.999536712157754 not specified not specified 6900 chr2 71780260 71780260 1 + C T rs550180529 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTTGACATGACCTGCCTGCCGCTGGCCTCCA < 41bp 1 0.146021900217271 1 0.0167361795902252 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780260 synonymous SNV . 0 13 hm5C_associated_SNPs_3793 0 0 0 0 1 Nucleus 1 0.500231678773481 1 0.999536642453038 hm5C_site_6900 DeepMRMD:1;iRNA_m5C:0.999536642453038 6901 chr2 71780265 71780265 1 + T C rs141867897 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTCGACACGACCTGCCTGCCGCTGGCCTCCA < 41bp 1 0.113496890806506 1 0.0110599100589752 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780265 nonsynonymous SNV 0.954 0 18 hm5C_associated_SNPs_3794 1 0 0 0 1 Nucleus 1 0.500231643922537 1 0.999536712154926 hm5C_site_6901 DeepMRMD:1;iRNA_m5C:0.999536712154926 not specified not specified 6902 chr2 71780278 71780278 1 + G A rs115849497 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTCGACATGACCTGCCTGCCACTGGCCTCCA < 41bp 1 0.164895639182702 1 0.016107589006424 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780278 synonymous SNV . 0 31 hm5C_associated_SNPs_3795 3 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_6902 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 6903 chr2 71783120 71783120 1 + T G rs548062068 71783115 + 71783095 71783135 41 GAAGCTGGCCTGGAGCAGGTCCACCTGGCCCTGAAGGCGCA GAAGCTGGCCTGGAGCAGGTCCACCGGGCCCTGAAGGCGCA < 41bp 1 0.174782912947089 1 0.0858902931213379 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71783115 chr2:71783120 nonsynonymous SNV 0.998 3 26 hm5C_associated_SNPs_3796 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6903 DeepMRMD:1;iRNA_m5C:0.999536712157815 6904 chr2 71783132 71783132 1 + C T rs145007061 71783115 + 71783095 71783135 41 GAAGCTGGCCTGGAGCAGGTCCACCTGGCCCTGAAGGCGCA GAAGCTGGCCTGGAGCAGGTCCACCTGGCCCTGAAGGTGCA < 41bp 1 0.149239036943895 1 0.0575733482837677 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71783115 chr2:71783132 nonsynonymous SNV 0.821 3 38 hm5C_associated_SNPs_3797 1 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6904 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 6905 chr2 72949093 72949093 1 + A C rs555989698 72949092 + 72949072 72949112 41 ATTTAGTCCACTTCATGCATCAACCTGGCATTGCAGTACCT ATTTAGTCCACTTCATGCATCCACCTGGCATTGCAGTACCT < 41bp 1 0.0275430459634237 1 0.103437662124634 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EXOC6B ENSG00000222536 ncRNA_exonic Human snRNA chr2:72949092 chr2:72949093 . . 0 22 hm5C_associated_SNPs_3798 0 0 1 0 0 chromatin 1 0.500241668740511 1 0.999516662518977 hm5C_site_6905 DeepMRMD:1;iRNA_m5C:0.999516662518977 6906 chr2 72949093 72949093 1 + A C rs555989698 72949095 + 72949075 72949115 41 TAGTCCACTTCATGCATCAACCTGGCATTGCAGTACCTCCA TAGTCCACTTCATGCATCCACCTGGCATTGCAGTACCTCCA < 41bp 1 0.0849598385635879 1 0.209125131368637 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EXOC6B ENSG00000222536 ncRNA_exonic Human snRNA chr2:72949095 chr2:72949093 . . 0 19 hm5C_associated_SNPs_3799 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_6906 DeepMRMD:1;iRNA_m5C:0.999536712157815 6907 chr2 72949093 72949093 1 + A C rs555989698 72949096 + 72949076 72949116 41 AGTCCACTTCATGCATCAACCTGGCATTGCAGTACCTCCAG AGTCCACTTCATGCATCCACCTGGCATTGCAGTACCTCCAG < 41bp 1 0.419774308457704 1 0.556536138057709 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EXOC6B ENSG00000222536 ncRNA_exonic Human snRNA chr2:72949096 chr2:72949093 . . 0 18 hm5C_associated_SNPs_3800 0 0 1 0 0 chromatin 1 0.500231635280814 0.886927723884582 0.999536729438372 hm5C_site_6907 DeepMRMD:0.886927723884582;iRNA_m5C:0.999536729438372 6908 chr2 72949093 72949093 1 + A C rs555989698 72949105 + 72949085 72949125 41 CATGCATCAACCTGGCATTGCAGTACCTCCAGGAATGGTGC CATGCATCCACCTGGCATTGCAGTACCTCCAGGAATGGTGC < 41bp 1 0.200693950882747 1 0.607894957065582 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EXOC6B ENSG00000222536 ncRNA_exonic Human snRNA chr2:72949105 chr2:72949093 . . 0 9 hm5C_associated_SNPs_3801 0 0 1 0 0 chromatin 1 0.500231643921102 0.784210085868836 0.999536712157796 hm5C_site_6908 DeepMRMD:0.784210085868836;iRNA_m5C:0.999536712157796 6909 chr2 72949093 72949093 1 + A C rs555989698 72949111 + 72949091 72949131 41 TCAACCTGGCATTGCAGTACCTCCAGGAATGGTGCTCTAAT TCCACCTGGCATTGCAGTACCTCCAGGAATGGTGCTCTAAT < 41bp 1 0.340717688170688 1 0.895553529262543 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EXOC6B ENSG00000222536 ncRNA_exonic Human snRNA chr2:72949111 chr2:72949093 . . 0 3 hm5C_associated_SNPs_3802 0 0 1 0 0 chromatin 1 0.500231643921152 0.208892941474914 0.999536712157696 hm5C_site_6909 DeepMRMD:0.208892941474914;iRNA_m5C:0.999536712157696 6910 chr2 73461483 73461483 1 + C A rs1053329 73461503 + 73461483 73461523 41 CGGGCCGCTGAATAAGCTTCCAAAATGATGGTGAGTGGCGT AGGGCCGCTGAATAAGCTTCCAAAATGATGGTGAGTGGCGT < 41bp 1 0.63649780800897 1 0.75880491733551 experiment 0.72700438398206 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT7 ENSG00000135624 UTR5 Human protein_coding chr2:73461503 chr2:73461483 . . 0 1 hm5C_associated_SNPs_3803 0 0 1 0 1 Cytosol 1 0.500231643921092 0.48239016532898 0.999536712157815 hm5C_site_6910 DeepMRMD:0.48239016532898;iRNA_m5C:0.999536712157815 6911 chr2 73461493 73461493 1 + A C rs550584392 73461503 + 73461483 73461523 41 CGGGCCGCTGAATAAGCTTCCAAAATGATGGTGAGTGGCGT CGGGCCGCTGCATAAGCTTCCAAAATGATGGTGAGTGGCGT < 41bp 1 0.634323703921554 1 0.732730984687805 experiment 0.731352592156891 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT7 ENSG00000135624 UTR5 Human protein_coding chr2:73461503 chr2:73461493 . . 0 11 hm5C_associated_SNPs_3804 0 0 1 0 1 Cytosol 1 0.500231645642789 0.53453803062439 0.999536708714421 hm5C_site_6911 DeepMRMD:0.53453803062439;iRNA_m5C:0.999536708714421 6912 chr2 73476997 73476997 1 + G A rs567536710 73476990 + 73476970 73477010 41 CAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCC CAGTGTGAATGCTCTGTCAGCAGATGTACTGGGTCGATGCC < 41bp 1 0.524402991810154 1 0.456431359052658 experiment 0.951194016379691 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476990 chr2:73476997 synonymous SNV . 0 28 hm5C_associated_SNPs_3805 0 0 1 0 2 Cytosol 1 0.500232725482098 1 0.999534549035804 hm5C_site_6912 DeepMRMD:1;iRNA_m5C:0.999534549035804 6913 chr2 73476997 73476997 1 + G A rs567536710 73477009 + 73476989 73477029 41 GCAGATGTGCTGGGTCGATGCCAGGTGTTTGAAGAGACCCA GCAGATGTACTGGGTCGATGCCAGGTGTTTGAAGAGACCCA < 41bp 1 0.695406351920346 1 0.472182154655457 experiment 0.609187296159308 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477009 chr2:73476997 synonymous SNV . 0 9 hm5C_associated_SNPs_3806 0 0 1 0 2 Cytosol 1 0.500231963158446 1 0.999536073683108 hm5C_site_6913 DeepMRMD:1;iRNA_m5C:0.999536073683108 6914 chr2 74154160 74154160 1 + C G rs145252858 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTGTCCATCGAA < 41bp 1 0.681706614196474 1 0.303615063428879 experiment 0.636586771607052 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154160 synonymous SNV . 0 32 hm5C_associated_SNPs_3807 2 0 1 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6914 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 6915 chr2 74315082 74315082 1 + C T rs115293949 74315067 + 74315047 74315087 41 CTCATCCTGGCCTGGGAGGGCATTCCCCGTAGCCTCGGAGA CTCATCCTGGCCTGGGAGGGCATTCCCCGTAGCCTTGGAGA < 41bp 1 0.0204266784798798 1 0.0902539789676666 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74315067 chr2:74315082 synonymous SNV . 0 36 hm5C_associated_SNPs_3810 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_6915 DeepMRMD:1;iRNA_m5C:0.999536712157815 6916 chr2 74326603 74326603 1 + C T rs199772517 74326589 + 74326569 74326609 41 TCCCCCGCGAGGTCCGACGCCTGCCCGAGCCTGCCAAGTCC TCCCCCGCGAGGTCCGACGCCTGCCCGAGCCTGCTAAGTCC < 41bp 1 0.287326200471635 1 0.0445153713226318 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74326589 chr2:74326603 synonymous SNV . 0 35 hm5C_associated_SNPs_3811 0 0 0 0 0 Cytosol 1 0.500231669695398 1 0.999536660609205 hm5C_site_6916 DeepMRMD:1;iRNA_m5C:0.999536660609205 6917 chr2 74328125 74328125 1 + C G rs571479182 74328122 + 74328102 74328142 41 TCAAGCAAGAGCCAGTAGACCCGCTGACCCAGGCTGAGCCT TCAAGCAAGAGCCAGTAGACCCGGTGACCCAGGCTGAGCCT < 41bp 1 0.388537457624526 1 0.504570364952087 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74328122 chr2:74328125 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_3812 0 0 1 0 0 Cytosol 1 0.500231644475962 0.990859270095826 0.999536711048077 hm5C_site_6917 DeepMRMD:0.990859270095826;iRNA_m5C:0.999536711048077 6918 chr2 74328778 74328778 1 + G A rs117784533 74328796 + 74328776 74328816 41 GCGGTGAAGGAGGAGAAGGGCGGTGGTGGTGCGGAGGAGGA GCAGTGAAGGAGGAGAAGGGCGGTGGTGGTGCGGAGGAGGA < 41bp 1 0.488659907647208 1 0.391795516014099 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74328796 chr2:74328778 synonymous SNV . 0 3 hm5C_associated_SNPs_3813 0 0 0 0 0 Cytosol 1 0.500229283822523 1 0.999541432354953 hm5C_site_6918 DeepMRMD:1;iRNA_m5C:0.999541432354953 6919 chr2 74331959 74331959 1 + G A rs7603655 74331942 + 74331922 74331962 41 CCCAAACAGCCTTGGTTCATCAGTTTCTGCAGTAGGAGATA CCCAAACAGCCTTGGTTCATCAGTTTCTGCAGTAGGAAATA < 41bp 1 0.206876443756982 1 0.152577489614487 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TET3 ENSG00000187605 UTR3 Human protein_coding chr2:74331942 chr2:74331959 . . 0 38 hm5C_associated_SNPs_3814 0 0 1 0 0 Cytosol 1 0.500231643916578 1 0.999536712166844 hm5C_site_6919 DeepMRMD:1;iRNA_m5C:0.999536712166844 6920 chr2 74643215 74643215 1 + C T rs61999261 74643210 - 74643190 74643230 41 CTCGAGGAGGGCGAGGACGTCGTAGGGGACATCTTGGCCGA CTCGAGGAGGGCGAGAACGTCGTAGGGGACATCTTGGCCGA < 41bp 1 0.667249261275275 1 0.679258108139038 experiment 0.665501477449451 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C2orf81 ENSG00000159239 CDS Human protein_coding chr2:74643210 chr2:74643215 nonsynonymous SNV 0.843 3 16 hm5C_associated_SNPs_3815 0 0 0 0 1 exosome 1 0.500231643924677 0.641483783721924 0.999536712150647 hm5C_site_6920 DeepMRMD:0.641483783721924;iRNA_m5C:0.999536712150647 6921 chr2 74756548 74756548 1 + G C rs1183739 74756536 - 74756516 74756556 41 CTGCGCCTCTTTCTCGGGATCCACGTCTTCCTGGTCAGCTG CTGCGCCTGTTTCTCGGGATCCACGTCTTCCTGGTCAGCTG < 41bp 1 0.42608100571578 1 0.0935222208499908 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AUP1 ENSG00000115307 CDS Human protein_coding chr2:74756536 chr2:74756548 synonymous SNV . 0 9 hm5C_associated_SNPs_3816 1 0 1 0 2 Ribosome 1 0.50023164388989 1 0.999536712220221 hm5C_site_6921 DeepMRMD:1;iRNA_m5C:0.999536712220221 Parkinson Disease, Dominant Parkinson Disease, Dominant 6922 chr2 85598245 85598245 1 + G A rs145555897 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCACCGCCCTCCGACACTACCTCT < 41bp 1 0.43080222836372 1 0.443441867828369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598245 nonsynonymous SNV 0.185 2 20 hm5C_associated_SNPs_3817 0 0 0 4 1 Cytosol 1 0.500231643912541 1 0.999536712174917 hm5C_site_6922 DeepMRMD:1;iRNA_m5C:0.999536712174917 6923 chr2 85772072 85772072 1 + T C rs571321000 85772091 + 85772071 85772111 41 TTTCTCTCAACACCATGATTCCTTTAACAACATGTTTCCAG TCTCTCTCAACACCATGATTCCTTTAACAACATGTTTCCAG < 41bp 1 0.062953575101282 1 0.0620160400867462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGCX;MAT2A ENSG00000115486;ENSG00000168906 UTR3 Human other chr2:85772091 chr2:85772072 . . 0 2 hm5C_associated_SNPs_3819 0 0 1 3 0 unknown 1 0.500231680005165 1 0.999536639989671 hm5C_site_6923 DeepMRMD:1;iRNA_m5C:0.999536639989671 6924 chr2 86360540 86360540 1 + G C rs35016837 86360529 + 86360509 86360549 41 AAGCATTGGATGTGGCCAATCGGCTAGAAGTGATTCCTAAA AAGCATTGGATGTGGCCAATCGGCTAGAAGTCATTCCTAAA < 41bp 1 0.545726287826383 1 0.719179630279541 experiment 0.908547424347234 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360529 chr2:86360540 synonymous SNV . 0 32 hm5C_associated_SNPs_3820 0 0 1 0 2 Nucleus 1 0.500231643920642 0.561640739440918 0.999536712158717 hm5C_site_6924 DeepMRMD:0.561640739440918;iRNA_m5C:0.999536712158717 6925 chr2 86363074 86363074 1 + A G rs3770069 86363062 + 86363042 86363082 41 AGCTGAATGTATGTGTTTCTCCTTTGTCCTGCATGTGGCAG AGCTGAATGTATGTGTTTCTCCTTTGTCCTGCGTGTGGCAG < 41bp 1 0.0375481681831253 1 0.0347179174423218 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD94 ENSG00000208772 ncRNA_exonic Human snoRNA chr2:86363062 chr2:86363074 . . 0 33 hm5C_associated_SNPs_3821 0 0 1 2 0 unknown 1 0.500231643921236 1 0.999536712157528 hm5C_site_6925 DeepMRMD:1;iRNA_m5C:0.999536712157528 6926 chr2 86363074 86363074 1 + A G rs3770069 86363063 + 86363043 86363083 41 GCTGAATGTATGTGTTTCTCCTTTGTCCTGCATGTGGCAGG GCTGAATGTATGTGTTTCTCCTTTGTCCTGCGTGTGGCAGG < 41bp 1 0.112052872649085 1 0.0235425531864166 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD94 ENSG00000208772 ncRNA_exonic Human snoRNA chr2:86363063 chr2:86363074 . . 0 32 hm5C_associated_SNPs_3822 0 0 1 2 0 unknown 1 0.500232727020459 1 0.999534545959082 hm5C_site_6926 DeepMRMD:1;iRNA_m5C:0.999534545959082 6927 chr2 86363074 86363074 1 + A G rs3770069 86363073 + 86363053 86363093 41 TGTGTTTCTCCTTTGTCCTGCATGTGGCAGGCTGATGGGGA TGTGTTTCTCCTTTGTCCTGCGTGTGGCAGGCTGATGGGGA < 41bp 1 0.0563244862397462 1 0.107215017080307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD94 ENSG00000208772 ncRNA_exonic Human snoRNA chr2:86363073 chr2:86363074 . . 0 22 hm5C_associated_SNPs_3823 0 0 1 2 0 unknown 1 0.500231643733853 1 0.999536712532294 hm5C_site_6927 DeepMRMD:1;iRNA_m5C:0.999536712532294 6928 chr2 86439552 86439552 1 + G A rs116387151 86439559 + 86439539 86439579 41 CACTTCTGAGACGGCAAAGCCAACCACTTAGAAGCCTTCCA CACTTCTGAGACGACAAAGCCAACCACTTAGAAGCCTTCCA < 41bp 1 0.455942993251258 1 0.340664386749268 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL35 ENSG00000132313 UTR3 Human protein_coding chr2:86439559 chr2:86439552 . . 0 14 hm5C_associated_SNPs_3825 0 0 1 1 1 Ribosome 1 0.500229536205285 1 0.99954092758943 hm5C_site_6928 DeepMRMD:1;iRNA_m5C:0.99954092758943 6929 chr2 87000580 87000580 1 + G A rs75434387 87000569 + 87000549 87000589 41 TTTGCAATTTGTAAGTGAAACTGAATCGTGGGTGCATTTCA TTTGCAATTTGTAAGTGAAACTGAATCGTGGATGCATTTCA < 41bp 1 0.2914762793997 1 0.0753350853919983 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RMND5A ENSG00000153561 UTR3 Human protein_coding chr2:87000569 chr2:87000580 . . 0 32 hm5C_associated_SNPs_3826 0 0 1 0 0 Ribosome 1 0.500231611002092 1 0.999536777995816 hm5C_site_6929 DeepMRMD:1;iRNA_m5C:0.999536777995816 6930 chr2 87003023 87003023 1 + A G rs566048242 87003036 + 87003016 87003056 41 CAACCCTATCATCGCTGATGCTTTCTGCATGTCAGCAGTCC CAACCCTGTCATCGCTGATGCTTTCTGCATGTCAGCAGTCC < 41bp 1 0.0612288393924631 1 0.0276375114917755 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RMND5A ENSG00000153561 UTR3 Human protein_coding chr2:87003036 chr2:87003023 . . 0 8 hm5C_associated_SNPs_3827 0 0 1 1 0 Ribosome 1 0.500231639078559 1 0.999536721842881 hm5C_site_6930 DeepMRMD:1;iRNA_m5C:0.999536721842881 6931 chr2 87003028 87003028 1 + C T rs1049457 87003036 + 87003016 87003056 41 CAACCCTATCATCGCTGATGCTTTCTGCATGTCAGCAGTCC CAACCCTATCATTGCTGATGCTTTCTGCATGTCAGCAGTCC < 41bp 1 0.0560056785345791 1 0.0142485499382019 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RMND5A ENSG00000153561 UTR3 Human protein_coding chr2:87003036 chr2:87003028 . . 0 13 hm5C_associated_SNPs_3828 0 0 1 0 0 Ribosome 1 0.500231643797224 1 0.999536712405552 hm5C_site_6931 DeepMRMD:1;iRNA_m5C:0.999536712405552 6932 chr2 96903691 96903691 1 + C G rs13432441 96903711 + 96903691 96903731 41 CGAAGGAGGCATGACAATGGCACGTGACCATGGGATCACTG GGAAGGAGGCATGACAATGGCACGTGACCATGGGATCACTG < 41bp 1 0.651807105108081 1 0.376739174127579 experiment 0.696385789783838 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STARD7-AS1 ENSG00000204685 ncRNA_intronic Human processed_transcript chr2:96903711 chr2:96903691 . . 0 1 hm5C_associated_SNPs_3829 0 0 0 0 1 unknown 1 0.500410536074361 1 0.999178927851279 hm5C_site_6932 DeepMRMD:1;iRNA_m5C:0.999178927851279 6933 chr2 96903714 96903714 1 + G A rs189189691 96903711 + 96903691 96903731 41 CGAAGGAGGCATGACAATGGCACGTGACCATGGGATCACTG CGAAGGAGGCATGACAATGGCACATGACCATGGGATCACTG < 41bp 1 0.387899835709329 1 0.20208403468132 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STARD7-AS1 ENSG00000204685 ncRNA_intronic Human processed_transcript chr2:96903711 chr2:96903714 . . 0 24 hm5C_associated_SNPs_3830 0 0 0 0 1 unknown 1 0.500230791750182 1 0.999538416499635 hm5C_site_6933 DeepMRMD:1;iRNA_m5C:0.999538416499635 6934 chr2 97464936 97464936 1 + G A rs36121810 97464916 + 97464896 97464936 41 AGTACTACGCCCGCCATTACCTGTACACCCGAAATAAGCCG AGTACTACGCCCGCCATTACCTGTACACCCGAAATAAGCCA < 41bp 1 0.616429315216641 1 0.754606962203979 experiment 0.767141369566718 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97464916 chr2:97464936 synonymous SNV . 0 41 hm5C_associated_SNPs_3832 1 0 1 0 1 chromatin 1 0.500231663644482 0.490786075592042 0.999536672711037 hm5C_site_6934 DeepMRMD:0.490786075592042;iRNA_m5C:0.999536672711037 Cone-rod dystrophy amelogenesis imperfecta Cone-rod dystrophy amelogenesis imperfecta 6935 chr2 97875438 97875438 1 + G A rs191164173 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGTCTTCTCGGAAAAAACCAACCTTGAAGGTAATGAAAC < 41bp 1 0.202467443910583 1 0.253227233886719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875438 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_3833 0 0 0 0 1 Cytosol 1 0.500231643921154 1 0.999536712157692 hm5C_site_6935 DeepMRMD:1;iRNA_m5C:0.999536712157692 6936 chr2 98263883 98263883 1 + A G rs75630766 98263871 + 98263851 98263891 41 GGAAGACCCTAATTTAGTCCCCTCCATCTCCAACAAGAGAA GGAAGACCCTAATTTAGTCCCCTCCATCTCCAGCAAGAGAA < 41bp 1 0.0443388574118148 1 0.0885582566261292 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263871 chr2:98263883 nonsynonymous SNV 0.294 0 33 hm5C_associated_SNPs_3834 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6936 DeepMRMD:1;iRNA_m5C:0.999536712157815 6937 chr2 98263883 98263883 1 + A G rs75630766 98263872 + 98263852 98263892 41 GAAGACCCTAATTTAGTCCCCTCCATCTCCAACAAGAGAAT GAAGACCCTAATTTAGTCCCCTCCATCTCCAGCAAGAGAAT < 41bp 1 0.644201224393914 1 0.640792608261108 experiment 0.711597551212172 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263872 chr2:98263883 nonsynonymous SNV 0.294 0 32 hm5C_associated_SNPs_3835 0 0 1 0 2 Ribosome 1 0.500231643921093 0.718414783477784 0.999536712157814 hm5C_site_6937 DeepMRMD:0.718414783477784;iRNA_m5C:0.999536712157814 6938 chr2 99061362 99061362 1 + G C rs140476409 99061382 + 99061362 99061402 41 GAGGGTTCGCTGCTGGTTTGCCGCCGGGTCGGGCTCCGTGG CAGGGTTCGCTGCTGGTTTGCCGCCGGGTCGGGCTCCGTGG < 41bp 1 0.397185518931488 1 0.297911822795868 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPP4A ENSG00000040933 UTR5 Human protein_coding chr2:99061382 chr2:99061362 . . 0 1 hm5C_associated_SNPs_3836 0 0 1 0 0 Ribosome 1 0.500231643921492 1 0.999536712157015 hm5C_site_6938 DeepMRMD:1;iRNA_m5C:0.999536712157015 6939 chr2 99061374 99061374 1 + C G rs573103838 99061382 + 99061362 99061402 41 GAGGGTTCGCTGCTGGTTTGCCGCCGGGTCGGGCTCCGTGG GAGGGTTCGCTGGTGGTTTGCCGCCGGGTCGGGCTCCGTGG < 41bp 1 0.473788228288511 1 0.391899615526199 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPP4A ENSG00000040933 UTR5 Human protein_coding chr2:99061382 chr2:99061374 . . 0 13 hm5C_associated_SNPs_3837 0 0 1 0 0 Ribosome 1 0.500231643987241 1 0.999536712025518 hm5C_site_6939 DeepMRMD:1;iRNA_m5C:0.999536712025518 6940 chr2 99179971 99179971 1 + C A rs61748143 99179968 + 99179948 99179988 41 TACCCGCTGCTGACCACTCTCACCGACTGCGTGGCCATGAT TACCCGCTGCTGACCACTCTCACAGACTGCGTGGCCATGAT < 41bp 1 0.595118587858852 1 0.19342052936554 experiment 0.809762824282295 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99179968 chr2:99179971 synonymous SNV . 0 24 hm5C_associated_SNPs_3838 0 0 1 0 1 Ribosome 1 0.499698295182933 1 1 hm5C_site_6940 DeepMRMD:1;iRNA_m5C:1 6941 chr2 99772851 99772851 1 + C G rs187804121 99772840 + 99772820 99772860 41 GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTG < 41bp 1 0.317423041841014 1 0.0595990717411041 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772840 chr2:99772851 . . 0 32 hm5C_associated_SNPs_3839 0 0 0 0 2 chromatin 1 0.500231643921077 1 0.999536712157846 hm5C_site_6941 DeepMRMD:1;iRNA_m5C:0.999536712157846 6942 chr2 99772851 99772851 1 + C G rs187804121 99772841 + 99772821 99772861 41 GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGA GGTTCAAGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGA < 41bp 1 0.539832032111645 1 0.334933459758759 experiment 0.920335935776711 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772841 chr2:99772851 . . 0 31 hm5C_associated_SNPs_3840 0 0 0 0 2 chromatin 1 0.500231644302359 1 0.999536711395282 hm5C_site_6942 DeepMRMD:1;iRNA_m5C:0.999536711395282 6943 chr2 99772851 99772851 1 + C G rs187804121 99772846 + 99772826 99772866 41 AAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTA AAGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTA < 41bp 1 0.224227174733126 1 0.135076522827148 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772846 chr2:99772851 . . 0 26 hm5C_associated_SNPs_3841 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_6943 DeepMRMD:1;iRNA_m5C:0.999536712157815 6944 chr2 99772851 99772851 1 + C G rs187804121 99772847 + 99772827 99772867 41 AGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTAC AGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTAC < 41bp 1 0.447211819768961 1 0.806284368038177 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772847 chr2:99772851 . . 0 25 hm5C_associated_SNPs_3842 0 0 0 0 2 chromatin 1 0.500231644030888 0.387431263923646 0.999536711938224 hm5C_site_6944 DeepMRMD:0.387431263923646;iRNA_m5C:0.999536711938224 6945 chr2 99772851 99772851 1 + C G rs187804121 99772849 + 99772829 99772869 41 CGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAG CGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTACAG < 41bp 1 0.621720715926222 1 0.748080849647522 experiment 0.756558568147556 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772849 chr2:99772851 . . 0 23 hm5C_associated_SNPs_3843 0 0 0 0 2 chromatin 1 0.500229089619329 0.503838300704956 0.999541820761342 hm5C_site_6945 DeepMRMD:0.503838300704956;iRNA_m5C:0.999541820761342 6946 chr2 99772851 99772851 1 + C G rs187804121 99772850 + 99772830 99772870 41 GATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGG GATTCTCCTGCCTCAGCCTCCGGAGTAGCTGAGATTACAGG < 41bp 1 0.582014110010763 1 0.85805606842041 experiment 0.835971779978474 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772850 chr2:99772851 . . 0 22 hm5C_associated_SNPs_3844 0 0 0 0 2 chromatin 1 0.500231643921092 0.28388786315918 0.999536712157815 hm5C_site_6946 DeepMRMD:0.28388786315918;iRNA_m5C:0.999536712157815 6947 chr2 99772852 99772852 1 + G A rs190816941 99772840 + 99772820 99772860 41 GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTG < 41bp 1 0.308789578671637 1 0.0757335126399994 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772840 chr2:99772852 . . 0 33 hm5C_associated_SNPs_3846 1 0 0 0 2 chromatin 1 0.500231643905866 1 0.999536712188267 hm5C_site_6947 DeepMRMD:1;iRNA_m5C:0.999536712188267 not specified not specified 6948 chr2 99772852 99772852 1 + G A rs190816941 99772841 + 99772821 99772861 41 GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGA GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGA < 41bp 1 0.554586170949139 1 0.152526527643204 experiment 0.890827658101722 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772841 chr2:99772852 . . 0 32 hm5C_associated_SNPs_3847 1 0 0 0 2 chromatin 1 0.500231643921059 1 0.999536712157882 hm5C_site_6948 DeepMRMD:1;iRNA_m5C:0.999536712157882 not specified not specified 6949 chr2 99772852 99772852 1 + G A rs190816941 99772846 + 99772826 99772866 41 AAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTA AAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTA < 41bp 1 0.195048972000492 1 0.103624671697617 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772846 chr2:99772852 . . 0 27 hm5C_associated_SNPs_3848 1 0 0 0 2 chromatin 1 0.500231643921105 1 0.99953671215779 hm5C_site_6949 DeepMRMD:1;iRNA_m5C:0.99953671215779 not specified not specified 6950 chr2 99772852 99772852 1 + G A rs190816941 99772847 + 99772827 99772867 41 AGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTAC AGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTAC < 41bp 1 0.268148740190135 1 0.303984075784683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772847 chr2:99772852 . . 0 26 hm5C_associated_SNPs_3849 1 0 0 0 2 chromatin 1 0.500231643865059 1 0.999536712269881 hm5C_site_6950 DeepMRMD:1;iRNA_m5C:0.999536712269881 not specified not specified 6951 chr2 99772852 99772852 1 + G A rs190816941 99772849 + 99772829 99772869 41 CGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAG CGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAG < 41bp 1 0.421244089185736 1 0.296933591365814 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772849 chr2:99772852 . . 0 24 hm5C_associated_SNPs_3850 1 0 0 0 2 chromatin 1 0.500231768473603 1 0.999536463052795 hm5C_site_6951 DeepMRMD:1;iRNA_m5C:0.999536463052795 not specified not specified 6952 chr2 99772852 99772852 1 + G A rs190816941 99772850 + 99772830 99772870 41 GATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGG GATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGG < 41bp 1 0.326903620645292 1 0.417724072933197 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772850 chr2:99772852 . . 0 23 hm5C_associated_SNPs_3851 1 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_6952 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 6953 chr2 99772852 99772852 1 + G A rs190816941 99772851 + 99772831 99772871 41 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGC ATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGC < 41bp 1 0.533595690621704 1 0.502003967761993 experiment 0.932808618756592 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIPT1 ENSG00000144182;ENSG00000273155 UTR5 Human other chr2:99772851 chr2:99772852 . . 0 22 hm5C_associated_SNPs_3852 1 0 0 0 2 chromatin 1 0.500231185083727 0.995992064476014 0.999537629832545 hm5C_site_6953 DeepMRMD:0.995992064476014;iRNA_m5C:0.999537629832545 not specified not specified 6954 chr2 99802650 99802650 1 + G A rs150171730 99802640 + 99802620 99802660 41 CTACTTCCTACTTCCCACAGCCTCTAAAGAGAGCAATCACT CTACTTCCTACTTCCCACAGCCTCTAAAGAAAGCAATCACT < 41bp 1 0.0904324890256116 1 0.154283165931702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL30 ENSG00000241962 CDS Human protein_coding chr2:99802640 chr2:99802650 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_3855 0 0 1 1 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_6954 DeepMRMD:1;iRNA_m5C:0.999536712157815 6955 chr2 99953884 99953884 1 + C G rs370609784 99953866 + 99953846 99953886 41 GAACTCACACCATATGTGTCCTGTTCCAGTGCGCGGGTCTG GAACTCACACCATATGTGTCCTGTTCCAGTGCGCGGGTGTG < 41bp 1 0.323317658665628 1 0.0333932936191559 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 UTR5 Human protein_coding chr2:99953866 chr2:99953884 . . 0 39 hm5C_associated_SNPs_3857 0 0 1 0 0 Ribosome 1 0.500231586026696 1 0.999536827946608 hm5C_site_6955 DeepMRMD:1;iRNA_m5C:0.999536827946608 6956 chr2 99985866 99985866 1 + A C rs147438767 99985879 + 99985859 99985899 41 TGAATCAATGGAATTATGTGCTGCTGTAGAAGTTATGGAAC TGAATCACTGGAATTATGTGCTGCTGTAGAAGTTATGGAAC < 41bp 1 0.410411186817719 1 0.36541673541069 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99985879 chr2:99985866 nonsynonymous SNV 0.876 0 8 hm5C_associated_SNPs_3858 0 0 1 0 0 Ribosome 1 0.500231099875468 1 0.999537800249064 hm5C_site_6956 DeepMRMD:1;iRNA_m5C:0.999537800249064 6957 chr2 99985866 99985866 1 + A C rs147438767 99985882 + 99985862 99985902 41 ATCAATGGAATTATGTGCTGCTGTAGAAGTTATGGAACAAG ATCACTGGAATTATGTGCTGCTGTAGAAGTTATGGAACAAG < 41bp 1 0.313389731619183 1 0.389966666698456 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99985882 chr2:99985866 nonsynonymous SNV 0.876 0 5 hm5C_associated_SNPs_3859 0 0 1 0 0 Ribosome 1 0.500231643921493 1 0.999536712157013 hm5C_site_6957 DeepMRMD:1;iRNA_m5C:0.999536712157013 6958 chr2 101188227 101188227 1 + C G rs143476375 101188212 + 101188192 101188232 41 TGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTCTGGTG TGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTGTGGTG < 41bp 1 0.385176660080881 1 0.480477631092072 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101188212 chr2:101188227 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_3860 0 0 1 0 1 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_6958 DeepMRMD:1;iRNA_m5C:0.999536712157814 6959 chr2 101612034 101612034 1 + C T rs80034641 101612019 + 101611999 101612039 41 CAGCAGTCTGTCTGAGTCGTCAGGCCTCCAGCAGCCGCCCC CAGCAGTCTGTCTGAGTCGTCAGGCCTCCAGCAGCTGCCCC < 41bp 1 0.667513649854659 1 0.966254949569702 experiment 0.664972700290682 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101612019 chr2:101612034 nonsynonymous SNV 0.664 1 36 hm5C_associated_SNPs_3861 0 0 0 0 0 cytosol 1 0.500231643921065 0.0674901008605959 0.999536712157871 hm5C_site_6959 DeepMRMD:0.0674901008605959;iRNA_m5C:0.999536712157871 6960 chr2 101886623 101886623 1 + C T rs149754769 101886611 + 101886591 101886631 41 TTTGTTTTAAGGAAAAATATCAGTCAGTGCTCCGGGAGGTA TTTGTTTTAAGGAAAAATATCAGTCAGTGCTCTGGGAGGTA < 41bp 1 0.378223539769423 1 0.25662487745285 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CNOT11 ENSG00000158435 UTR3 Human protein_coding chr2:101886611 chr2:101886623 . . 0 33 hm5C_associated_SNPs_3866 0 0 1 0 0 Ribosome 1 0.500231265665609 1 0.999537468668782 hm5C_site_6960 DeepMRMD:1;iRNA_m5C:0.999537468668782 6961 chr2 101886624 101886624 1 + G A rs368378746 101886611 + 101886591 101886631 41 TTTGTTTTAAGGAAAAATATCAGTCAGTGCTCCGGGAGGTA TTTGTTTTAAGGAAAAATATCAGTCAGTGCTCCAGGAGGTA < 41bp 1 0.363694950191835 1 0.19366642832756 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CNOT11 ENSG00000158435 UTR3 Human protein_coding chr2:101886611 chr2:101886624 . . 0 34 hm5C_associated_SNPs_3867 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6961 DeepMRMD:1;iRNA_m5C:0.999536712157815 6962 chr2 102441807 102441807 1 + G A rs61742467 102441795 + 102441775 102441815 41 CTATAGCTTGTTATGGAGTTCTGTGGGGCTGGGTCCATTAC CTATAGCTTGTTATGGAGTTCTGTGGGGCTGGATCCATTAC < 41bp 1 0.3586281114748 1 0.26985490322113 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102441795 chr2:102441807 synonymous SNV . 0 33 hm5C_associated_SNPs_3868 0 0 1 0 0 Ribosome 1 0.50023179804647 1 0.999536403907061 hm5C_site_6962 DeepMRMD:1;iRNA_m5C:0.999536403907061 6963 chr2 102486847 102486847 1 + A G rs201882230 102486859 + 102486839 102486879 41 ATGACCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGGT ATGACCCCGTCCAAGGAGGGCACTCTAATCGTCCGCCAGGT < 41bp 1 0.131123792170393 1 0.0748676955699921 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486859 chr2:102486847 synonymous SNV . 0 9 hm5C_associated_SNPs_3869 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6963 DeepMRMD:1;iRNA_m5C:0.999536712157815 6964 chr2 102509661 102509661 1 + C G rs138836144 102509670 + 102509650 102509690 41 ATCTGGTAAGACAAGTACATCCACTCATGAATGCAGACACA ATCTGGTAAGAGAAGTACATCCACTCATGAATGCAGACACA < 41bp 1 0.254604387366373 1 0.0493995547294617 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP4K4 ENSG00000233404 CDS Human other chr2:102509670 chr2:102509661 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_3870 0 0 1 0 0 Ribosome 1 0.500231644047065 1 0.99953671190587 hm5C_site_6964 DeepMRMD:1;iRNA_m5C:0.99953671190587 6965 chr2 102509667 102509667 1 + C T rs141957396 102509670 + 102509650 102509690 41 ATCTGGTAAGACAAGTACATCCACTCATGAATGCAGACACA ATCTGGTAAGACAAGTATATCCACTCATGAATGCAGACACA < 41bp 1 0.32204686183995 1 0.0266952514648438 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP4K4 ENSG00000233404 CDS Human other chr2:102509670 chr2:102509667 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_3871 0 0 1 0 0 Ribosome 1 0.500232075068957 1 0.999535849862087 hm5C_site_6965 DeepMRMD:1;iRNA_m5C:0.999535849862087 6966 chr2 105959592 105959592 1 + G A rs28930676 105959573 + 105959553 105959593 41 AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGGC AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGAC < 41bp 1 0.498618670182908 1 0.500356495380402 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105959573 chr2:105959592 nonsynonymous SNV 0.626 0 40 hm5C_associated_SNPs_3874 0 0 1 0 2 Ribosome 1 0.500231642642439 0.999287009239196 0.999536714715122 hm5C_site_6966 DeepMRMD:0.999287009239196;iRNA_m5C:0.999536714715122 6967 chr2 109336004 109336004 1 + C T rs552611730 109336007 + 109335987 109336027 41 TTTCCTCTTGGAAGTGGCGACTGCTGCGGGCCTGAGCGCTG TTTCCTCTTGGAAGTGGTGACTGCTGCGGGCCTGAGCGCTG < 41bp 1 0.616499708738975 1 0.197483658790588 experiment 0.76700058252205 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RANBP2 ENSG00000153201 UTR5 Human protein_coding chr2:109336007 chr2:109336004 . . 0 18 hm5C_associated_SNPs_3875 0 0 1 0 0 Nucleus 1 0.500231643921415 1 0.999536712157171 hm5C_site_6967 DeepMRMD:1;iRNA_m5C:0.999536712157171 6968 chr2 109336018 109336018 1 + C T rs79379002 109336007 + 109335987 109336027 41 TTTCCTCTTGGAAGTGGCGACTGCTGCGGGCCTGAGCGCTG TTTCCTCTTGGAAGTGGCGACTGCTGCGGGCTTGAGCGCTG < 41bp 1 0.570064120573613 1 0.234519928693771 experiment 0.859871758852773 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RANBP2 ENSG00000153201 UTR5 Human protein_coding chr2:109336007 chr2:109336018 . . 0 32 hm5C_associated_SNPs_3877 1 0 1 0 0 Nucleus 1 0.500231643918657 1 0.999536712162685 hm5C_site_6968 DeepMRMD:1;iRNA_m5C:0.999536712162685 not specified not specified 6969 chr2 109336022 109336022 1 + G C rs372373398 109336007 + 109335987 109336027 41 TTTCCTCTTGGAAGTGGCGACTGCTGCGGGCCTGAGCGCTG TTTCCTCTTGGAAGTGGCGACTGCTGCGGGCCTGACCGCTG < 41bp 1 0.584919379663127 1 0.259298980236053 experiment 0.830161240673747 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RANBP2 ENSG00000153201 UTR5 Human protein_coding chr2:109336007 chr2:109336022 . . 0 36 hm5C_associated_SNPs_3879 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6969 DeepMRMD:1;iRNA_m5C:0.999536712157815 6970 chr2 109347314 109347314 1 + C G rs144278795 109347326 + 109347306 109347346 41 GAAGAAAACACAGACAAAGCCGTTGAATGTTACAGGGTAAG GAAGAAAAGACAGACAAAGCCGTTGAATGTTACAGGGTAAG < 41bp 1 0.0892077162620879 1 0.212608277797699 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347326 chr2:109347314 nonsynonymous SNV 0.838 1 9 hm5C_associated_SNPs_3881 0 0 1 0 1 Nucleus 1 0.500231644077872 1 0.999536711844257 hm5C_site_6970 DeepMRMD:1;iRNA_m5C:0.999536711844257 6971 chr2 110259798 110259798 1 + G A rs187675057 110259778 + 110259758 110259798 41 TTGTGAGGCCCTGGGGGTGCCCCGGAAGGGGCACCCCACCG TTGTGAGGCCCTGGGGGTGCCCCGGAAGGGGCACCCCACCA < 41bp 1 0.636748134436652 1 0.220725208520889 experiment 0.726503731126695 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SH3RF3 ENSG00000172985 UTR3 Human protein_coding chr2:110259778 chr2:110259798 . . 0 41 hm5C_associated_SNPs_3882 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6971 DeepMRMD:1;iRNA_m5C:0.999536712157815 6972 chr2 110259798 110259798 1 + G A rs187675057 110259789 + 110259769 110259809 41 TGGGGGTGCCCCGGAAGGGGCACCCCACCGCCCCTGTTGGG TGGGGGTGCCCCGGAAGGGGCACCCCACCACCCCTGTTGGG < 41bp 1 0.187512304647831 1 0.385143488645554 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SH3RF3 ENSG00000172985 UTR3 Human protein_coding chr2:110259789 chr2:110259798 . . 0 30 hm5C_associated_SNPs_3883 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_6972 DeepMRMD:1;iRNA_m5C:0.999536712157815 6973 chr2 110259798 110259798 1 + G A rs187675057 110259791 + 110259771 110259811 41 GGGGTGCCCCGGAAGGGGCACCCCACCGCCCCTGTTGGGAA GGGGTGCCCCGGAAGGGGCACCCCACCACCCCTGTTGGGAA < 41bp 1 0.223036490176498 1 0.342496335506439 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SH3RF3 ENSG00000172985 UTR3 Human protein_coding chr2:110259791 chr2:110259798 . . 0 28 hm5C_associated_SNPs_3884 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_6973 DeepMRMD:1;iRNA_m5C:0.999536712157815 6974 chr2 110259798 110259798 1 + G A rs187675057 110259792 + 110259772 110259812 41 GGGTGCCCCGGAAGGGGCACCCCACCGCCCCTGTTGGGAAC GGGTGCCCCGGAAGGGGCACCCCACCACCCCTGTTGGGAAC < 41bp 1 0.0717004882995207 1 0.447110176086426 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SH3RF3 ENSG00000172985 UTR3 Human protein_coding chr2:110259792 chr2:110259798 . . 0 27 hm5C_associated_SNPs_3885 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_6974 DeepMRMD:1;iRNA_m5C:0.999536712157815 6975 chr2 110259798 110259798 1 + G A rs187675057 110259793 + 110259773 110259813 41 GGTGCCCCGGAAGGGGCACCCCACCGCCCCTGTTGGGAACC GGTGCCCCGGAAGGGGCACCCCACCACCCCTGTTGGGAACC < 41bp 1 0.109895501066058 1 0.486937493085861 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SH3RF3 ENSG00000172985 UTR3 Human protein_coding chr2:110259793 chr2:110259798 . . 0 26 hm5C_associated_SNPs_3886 0 0 0 0 0 exosome 1 0.500231631744851 1 0.999536736510298 hm5C_site_6975 DeepMRMD:1;iRNA_m5C:0.999536736510298 6976 chr2 110259798 110259798 1 + G A rs187675057 110259794 + 110259774 110259814 41 GTGCCCCGGAAGGGGCACCCCACCGCCCCTGTTGGGAACCA GTGCCCCGGAAGGGGCACCCCACCACCCCTGTTGGGAACCA < 41bp 1 0.603762203693091 1 0.397274494171143 experiment 0.792475592613818 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SH3RF3 ENSG00000172985 UTR3 Human protein_coding chr2:110259794 chr2:110259798 . . 0 25 hm5C_associated_SNPs_3887 0 0 0 0 0 exosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_6976 DeepMRMD:1;iRNA_m5C:0.999536712157806 6977 chr2 110262039 110262039 1 + C T rs575701560 110262051 + 110262031 110262071 41 GGCTCAGCCGACTGGGAGATCCTTTGTACTTTGCACAGTTC GGCTCAGCTGACTGGGAGATCCTTTGTACTTTGCACAGTTC < 41bp 1 0.0928474574690095 1 0.137805163860321 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SH3RF3 ENSG00000172985 UTR3 Human protein_coding chr2:110262051 chr2:110262039 . . 0 9 hm5C_associated_SNPs_3888 0 0 0 0 0 exosome 1 0.49443579914314 1 1 hm5C_site_6977 DeepMRMD:1;iRNA_m5C:1 6978 chr2 113322014 113322014 1 + A G rs114717734 113321998 + 113321978 113322018 41 TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGT TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCGTGGT < 41bp 1 0.167237447952419 1 0.31479686498642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321998 chr2:113322014 nonsynonymous SNV 0.988 0 37 hm5C_associated_SNPs_3891 0 0 1 0 2 Nucleus 1 0.500231102705803 1 0.999537794588395 hm5C_site_6978 DeepMRMD:1;iRNA_m5C:0.999537794588395 6979 chr2 113322014 113322014 1 + A G rs114717734 113321999 + 113321979 113322019 41 ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGTT ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCGTGGTT < 41bp 1 0.663114503239659 1 0.213825136423111 experiment 0.673770993520681 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321999 chr2:113322014 nonsynonymous SNV 0.988 0 36 hm5C_associated_SNPs_3892 0 0 1 0 2 Nucleus 1 0.500075966640891 1 0.999848066718218 hm5C_site_6979 DeepMRMD:1;iRNA_m5C:0.999848066718218 6980 chr2 113950938 113950938 1 + C T rs192459191 113950934 + 113950914 113950954 41 CACCATTGCAATCCGGGGATCTTCCCCTCAGTAGGTAGGGA CACCATTGCAATCCGGGGATCTTCTCCTCAGTAGGTAGGGA < 41bp 1 0.0617383794059898 1 0.0946319699287415 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950934 chr2:113950938 nonsynonymous SNV 0.902 0 25 hm5C_associated_SNPs_3893 0 0 0 0 1 chromatin 1 0.500231643921094 1 0.999536712157812 hm5C_site_6980 DeepMRMD:1;iRNA_m5C:0.999536712157812 6981 chr2 114353068 114353068 1 + C G rs547041230 114353059 + 114353039 114353079 41 CCCCGCCACAGGATCCAGAGCAAGCACCGCCCCCTGGACGA CCCCGCCACAGGATCCAGAGCAAGCACCGGCCCCTGGACGA < 41bp 1 0.486353470229803 1 0.715253114700317 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASH2P ENSG00000146556 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:114353059 chr2:114353068 . . 0 30 hm5C_associated_SNPs_3894 0 0 1 0 1 unknown 1 0.500231643921092 0.569493770599366 0.999536712157815 hm5C_site_6981 DeepMRMD:0.569493770599366;iRNA_m5C:0.999536712157815 6982 chr2 114354007 114354007 1 + T C rs563299979 114354015 + 114353995 114354035 41 AGGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTG AGGTGCCTGAGACTGATGTTCCATCCTACCTGCCTGACCTG < 41bp 1 0.0392169703145041 1 0.150279998779297 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASH2P ENSG00000146556 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:114354015 chr2:114354007 . . 0 13 hm5C_associated_SNPs_3895 0 0 1 0 1 unknown 1 0.500231643925844 1 0.999536712148312 hm5C_site_6982 DeepMRMD:1;iRNA_m5C:0.999536712148312 6983 chr2 114354007 114354007 1 + T C rs563299979 114354016 + 114353996 114354036 41 GGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGC GGTGCCTGAGACTGATGTTCCATCCTACCTGCCTGACCTGC < 41bp 1 0.11734782167533 1 0.277384161949158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASH2P ENSG00000146556 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:114354016 chr2:114354007 . . 0 12 hm5C_associated_SNPs_3896 0 0 1 0 1 unknown 1 0.500231643921012 1 0.999536712157976 hm5C_site_6983 DeepMRMD:1;iRNA_m5C:0.999536712157976 6984 chr2 114400466 114400466 1 + G A rs570951121 114400447 + 114400427 114400467 41 TCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGT TCTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAAT < 41bp 1 0.48057433672426 1 0.11917382478714 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400447 chr2:114400466 . . 0 40 hm5C_associated_SNPs_3897 0 0 0 0 0 Nucleus 1 0.500231643922971 1 0.999536712154058 hm5C_site_6984 DeepMRMD:1;iRNA_m5C:0.999536712154058 6985 chr2 114400466 114400466 1 + G A rs570951121 114400448 + 114400428 114400468 41 CTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTG CTCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAATG < 41bp 1 0.281619966744818 1 0.155689150094986 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400448 chr2:114400466 . . 0 39 hm5C_associated_SNPs_3898 0 0 0 0 0 Nucleus 1 0.500231643921154 1 0.999536712157691 hm5C_site_6985 DeepMRMD:1;iRNA_m5C:0.999536712157691 6986 chr2 114400466 114400466 1 + G A rs570951121 114400449 + 114400429 114400469 41 TCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGC TCCTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAATGC < 41bp 1 0.425116520765273 1 0.21467512845993 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400449 chr2:114400466 . . 0 38 hm5C_associated_SNPs_3899 0 0 0 0 0 Nucleus 1 0.500231643867599 1 0.999536712264801 hm5C_site_6986 DeepMRMD:1;iRNA_m5C:0.999536712264801 6987 chr2 114400466 114400466 1 + G A rs570951121 114400451 + 114400431 114400471 41 CTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTG CTCACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAATGCTG < 41bp 1 0.239010511054538 1 0.126924067735672 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400451 chr2:114400466 . . 0 36 hm5C_associated_SNPs_3900 0 0 0 0 0 Nucleus 1 0.500231643920836 1 0.999536712158329 hm5C_site_6987 DeepMRMD:1;iRNA_m5C:0.999536712158329 6988 chr2 114400466 114400466 1 + G A rs570951121 114400457 + 114400437 114400477 41 TCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTA TCGTGATCCGCCCGCCTCGGCCTCCCAAAATGCTGGGATTA < 41bp 1 0.103723547585577 1 0.127293974161148 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400457 chr2:114400466 . . 0 30 hm5C_associated_SNPs_3903 0 0 0 0 0 Nucleus 1 0.500231639279494 1 0.999536721441011 hm5C_site_6988 DeepMRMD:1;iRNA_m5C:0.999536721441011 6989 chr2 114400466 114400466 1 + G A rs570951121 114400458 + 114400438 114400478 41 CGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC CGTGATCCGCCCGCCTCGGCCTCCCAAAATGCTGGGATTAC < 41bp 1 0.395865436216079 1 0.145391702651978 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400458 chr2:114400466 . . 0 29 hm5C_associated_SNPs_3904 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6989 DeepMRMD:1;iRNA_m5C:0.999536712157815 6990 chr2 114400466 114400466 1 + G A rs570951121 114400460 + 114400440 114400480 41 TGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG TGATCCGCCCGCCTCGGCCTCCCAAAATGCTGGGATTACAG < 41bp 1 0.481491340666855 1 0.142623662948608 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400460 chr2:114400466 . . 0 27 hm5C_associated_SNPs_3905 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_6990 DeepMRMD:1;iRNA_m5C:0.999536712157815 6991 chr2 114400466 114400466 1 + G A rs570951121 114400461 + 114400441 114400481 41 GATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG GATCCGCCCGCCTCGGCCTCCCAAAATGCTGGGATTACAGG < 41bp 1 0.518107081561306 1 0.407683879137039 experiment 0.963785836877388 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400461 chr2:114400466 . . 0 26 hm5C_associated_SNPs_3906 0 0 0 0 0 Nucleus 1 0.500231643920354 1 0.999536712159292 hm5C_site_6991 DeepMRMD:1;iRNA_m5C:0.999536712159292 6992 chr2 114400504 114400504 1 + C T rs793065 114400488 + 114400468 114400508 41 GCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCCCAATC GCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCCTAATC < 41bp 1 0.482051021162159 1 0.115061432123184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400488 chr2:114400504 . . 0 37 hm5C_associated_SNPs_3907 0 0 1 0 0 Nucleus 1 0.50023165694888 1 0.999536686102241 hm5C_site_6992 DeepMRMD:1;iRNA_m5C:0.999536686102241 6993 chr2 114400504 114400504 1 + C T rs793065 114400491 + 114400471 114400511 41 GGGATTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATC GGGATTACAGGCATGAGCCACCGCGCCCGGCCCTAATCATC < 41bp 1 0.409205314582008 1 0.516590237617493 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400491 chr2:114400504 . . 0 34 hm5C_associated_SNPs_3909 0 0 1 0 0 Nucleus 1 0.500290659164307 0.966819524765014 0.999418681671387 hm5C_site_6993 DeepMRMD:0.966819524765014;iRNA_m5C:0.999418681671387 6994 chr2 114400504 114400504 1 + C T rs793065 114400492 + 114400472 114400512 41 GGATTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCT GGATTACAGGCATGAGCCACCGCGCCCGGCCCTAATCATCT < 41bp 1 0.601916540727588 1 0.243960201740265 experiment 0.796166918544824 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400492 chr2:114400504 . . 0 33 hm5C_associated_SNPs_3910 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6994 DeepMRMD:1;iRNA_m5C:0.999536712157815 6995 chr2 114400504 114400504 1 + C T rs793065 114400494 + 114400474 114400514 41 ATTACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGT ATTACAGGCATGAGCCACCGCGCCCGGCCCTAATCATCTGT < 41bp 1 0.573288366388141 1 0.607640504837036 experiment 0.853423267223719 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400494 chr2:114400504 . . 0 31 hm5C_associated_SNPs_3911 0 0 1 0 0 Nucleus 1 0.500231643921092 0.784718990325928 0.999536712157815 hm5C_site_6995 DeepMRMD:0.784718990325928;iRNA_m5C:0.999536712157815 6996 chr2 114400504 114400504 1 + C T rs793065 114400496 + 114400476 114400516 41 TACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTT TACAGGCATGAGCCACCGCGCCCGGCCCTAATCATCTGTTT < 41bp 1 0.586418937308399 1 0.136337161064148 experiment 0.827162125383202 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400496 chr2:114400504 . . 0 29 hm5C_associated_SNPs_3912 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_6996 DeepMRMD:1;iRNA_m5C:0.999536712157815 6997 chr2 114400504 114400504 1 + C T rs793065 114400497 + 114400477 114400517 41 ACAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTT ACAGGCATGAGCCACCGCGCCCGGCCCTAATCATCTGTTTT < 41bp 1 0.234405864953529 1 0.127327919006348 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400497 chr2:114400504 . . 0 28 hm5C_associated_SNPs_3913 0 0 1 0 0 Nucleus 1 0.500231866264978 1 0.999536267470044 hm5C_site_6997 DeepMRMD:1;iRNA_m5C:0.999536267470044 6998 chr2 114400504 114400504 1 + C T rs793065 114400498 + 114400478 114400518 41 CAGGCATGAGCCACCGCGCCCGGCCCCAATCATCTGTTTTT CAGGCATGAGCCACCGCGCCCGGCCCTAATCATCTGTTTTT < 41bp 1 0.440035419420122 1 0.0924329161643982 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RABL2A ENSG00000144134 UTR3 Human protein_coding chr2:114400498 chr2:114400504 . . 0 27 hm5C_associated_SNPs_3914 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_6998 DeepMRMD:1;iRNA_m5C:0.999536712157815 6999 chr2 118579599 118579599 1 + A G rs149582535 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCGTTGTGGCCACACCAGGCCGTCTGCTGGACCAT < 41bp 1 0.596170549886525 1 0.160119384527206 experiment 0.807658900226949 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579599 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_3915 0 0 1 0 1 Nucleus 1 0.50023164392094 1 0.99953671215812 hm5C_site_6999 DeepMRMD:1;iRNA_m5C:0.99953671215812 7000 chr2 118582611 118582611 1 + T C rs61732821 118582619 + 118582599 118582639 41 CTTCTTTTCATCTTGTATGTCTGTGAAATACCACTATGAGT CTTCTTTTCATCCTGTATGTCTGTGAAATACCACTATGAGT < 41bp 1 0.396937142600262 1 0.371124863624573 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582619 chr2:118582611 synonymous SNV . 0 13 hm5C_associated_SNPs_3916 0 0 1 0 2 Nucleus 1 0.50022766517306 1 0.999544669653879 hm5C_site_7000 DeepMRMD:1;iRNA_m5C:0.999544669653879 7001 chr2 120005521 120005521 1 + C T rs147804223 120005510 + 120005490 120005530 41 GCCAGAACAAGTTCTTCAAGCTGCCCGTGTCCGTGGTCAAC GCCAGAACAAGTTCTTCAAGCTGCCCGTGTCTGTGGTCAAC < 41bp 1 0.332023992105085 1 0.0215213298797607 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120005510 chr2:120005521 synonymous SNV . 0 32 hm5C_associated_SNPs_3919 0 0 1 0 0 Ribosome 1 0.500231614036195 1 0.999536771927609 hm5C_site_7001 DeepMRMD:1;iRNA_m5C:0.999536771927609 7002 chr2 120125369 120125369 1 + C G rs192522428 120125385 + 120125365 120125405 41 GCCCCGGCCACTCCCTAGTGCCTGGCCCGGTGGTGGCCAGG GCCCGGGCCACTCCCTAGTGCCTGGCCCGGTGGTGGCCAGG < 41bp 1 0.195449024724663 1 0.0748092830181122 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DBI ENSG00000155368 UTR5 Human protein_coding chr2:120125385 chr2:120125369 . . 0 5 hm5C_associated_SNPs_3920 0 0 0 0 0 Ribosome 1 0.500231643921019 1 0.999536712157961 hm5C_site_7002 DeepMRMD:1;iRNA_m5C:0.999536712157961 7003 chr2 120125369 120125369 1 + C G rs192522428 120125386 + 120125366 120125406 41 CCCCGGCCACTCCCTAGTGCCTGGCCCGGTGGTGGCCAGGC CCCGGGCCACTCCCTAGTGCCTGGCCCGGTGGTGGCCAGGC < 41bp 1 0.436548455498986 1 0.108048528432846 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DBI ENSG00000155368 UTR5 Human protein_coding chr2:120125386 chr2:120125369 . . 0 4 hm5C_associated_SNPs_3921 0 0 0 0 0 Ribosome 1 0.500231644828559 1 0.999536710342882 hm5C_site_7003 DeepMRMD:1;iRNA_m5C:0.999536710342882 7004 chr2 120125384 120125384 1 + G A rs3091406 120125385 + 120125365 120125405 41 GCCCCGGCCACTCCCTAGTGCCTGGCCCGGTGGTGGCCAGG GCCCCGGCCACTCCCTAGTACCTGGCCCGGTGGTGGCCAGG < 41bp 1 0.193006466496454 1 0.0950504839420319 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DBI ENSG00000155368 UTR5 Human protein_coding chr2:120125385 chr2:120125384 . . 0 20 hm5C_associated_SNPs_3922 0 0 0 0 0 Ribosome 1 0.500231642546213 1 0.999536714907574 hm5C_site_7004 DeepMRMD:1;iRNA_m5C:0.999536714907574 7005 chr2 120125384 120125384 1 + G A rs3091406 120125386 + 120125366 120125406 41 CCCCGGCCACTCCCTAGTGCCTGGCCCGGTGGTGGCCAGGC CCCCGGCCACTCCCTAGTACCTGGCCCGGTGGTGGCCAGGC < 41bp 1 0.505165112912638 1 0.127780824899673 experiment 0.989669774174725 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DBI ENSG00000155368 UTR5 Human protein_coding chr2:120125386 chr2:120125384 . . 0 19 hm5C_associated_SNPs_3923 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_7005 DeepMRMD:1;iRNA_m5C:0.999536712157815 7006 chr2 120125384 120125384 1 + G A rs3091406 120125391 + 120125371 120125411 41 GCCACTCCCTAGTGCCTGGCCCGGTGGTGGCCAGGCAGTTG GCCACTCCCTAGTACCTGGCCCGGTGGTGGCCAGGCAGTTG < 41bp 1 0.388584785873981 1 0.251280903816223 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DBI ENSG00000155368 UTR5 Human protein_coding chr2:120125391 chr2:120125384 . . 0 14 hm5C_associated_SNPs_3924 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_7006 DeepMRMD:1;iRNA_m5C:0.999536712157814 7007 chr2 120125384 120125384 1 + G A rs3091406 120125401 + 120125381 120125421 41 AGTGCCTGGCCCGGTGGTGGCCAGGCAGTTGGCCGCGCTGC AGTACCTGGCCCGGTGGTGGCCAGGCAGTTGGCCGCGCTGC < 41bp 1 0.61142021639757 1 0.884201645851135 experiment 0.77715956720486 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DBI ENSG00000155368 UTR5 Human protein_coding chr2:120125401 chr2:120125384 . . 0 4 hm5C_associated_SNPs_3925 0 0 0 0 0 Ribosome 1 0.500231641492466 0.23159670829773 0.999536717015068 hm5C_site_7007 DeepMRMD:0.23159670829773;iRNA_m5C:0.999536717015068 7008 chr2 120125384 120125384 1 + G A rs3091406 120125402 + 120125382 120125422 41 GTGCCTGGCCCGGTGGTGGCCAGGCAGTTGGCCGCGCTGCT GTACCTGGCCCGGTGGTGGCCAGGCAGTTGGCCGCGCTGCT < 41bp 1 0.528219787610602 1 0.930621087551117 experiment 0.943560424778796 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DBI ENSG00000155368 UTR5 Human protein_coding chr2:120125402 chr2:120125384 . . 0 3 hm5C_associated_SNPs_3926 0 0 0 0 0 Ribosome 1 0.500231658685072 0.138757824897766 0.999536682629856 hm5C_site_7008 DeepMRMD:0.138757824897766;iRNA_m5C:0.999536682629856 7009 chr2 120125406 120125406 1 + C T rs8192502 120125386 + 120125366 120125406 41 CCCCGGCCACTCCCTAGTGCCTGGCCCGGTGGTGGCCAGGC CCCCGGCCACTCCCTAGTGCCTGGCCCGGTGGTGGCCAGGT < 41bp 1 0.391908956913345 1 0.057000458240509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DBI ENSG00000155368 UTR5 Human protein_coding chr2:120125386 chr2:120125406 . . 0 41 hm5C_associated_SNPs_3927 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7009 DeepMRMD:1;iRNA_m5C:0.999536712157815 7010 chr2 120125406 120125406 1 + C T rs8192502 120125391 + 120125371 120125411 41 GCCACTCCCTAGTGCCTGGCCCGGTGGTGGCCAGGCAGTTG GCCACTCCCTAGTGCCTGGCCCGGTGGTGGCCAGGTAGTTG < 41bp 1 0.401386598537313 1 0.339059084653854 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DBI ENSG00000155368 UTR5 Human protein_coding chr2:120125391 chr2:120125406 . . 0 36 hm5C_associated_SNPs_3928 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7010 DeepMRMD:1;iRNA_m5C:0.999536712157815 7011 chr2 120125406 120125406 1 + C T rs8192502 120125401 + 120125381 120125421 41 AGTGCCTGGCCCGGTGGTGGCCAGGCAGTTGGCCGCGCTGC AGTGCCTGGCCCGGTGGTGGCCAGGTAGTTGGCCGCGCTGC < 41bp 1 0.665453641675033 1 0.917692303657532 experiment 0.669092716649934 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DBI ENSG00000155368 UTR5 Human protein_coding chr2:120125401 chr2:120125406 . . 0 26 hm5C_associated_SNPs_3929 0 0 0 0 0 Ribosome 1 0.500234736315995 0.164615392684936 0.999530527368009 hm5C_site_7011 DeepMRMD:0.164615392684936;iRNA_m5C:0.999530527368009 7012 chr2 120125406 120125406 1 + C T rs8192502 120125402 + 120125382 120125422 41 GTGCCTGGCCCGGTGGTGGCCAGGCAGTTGGCCGCGCTGCT GTGCCTGGCCCGGTGGTGGCCAGGTAGTTGGCCGCGCTGCT < 41bp 1 0.629738574016547 1 0.910655617713928 experiment 0.740522851966906 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DBI ENSG00000155368 UTR5 Human protein_coding chr2:120125402 chr2:120125406 . . 0 25 hm5C_associated_SNPs_3930 0 0 0 0 0 Ribosome 1 0.500231643921505 0.178688764572144 0.999536712156989 hm5C_site_7012 DeepMRMD:0.178688764572144;iRNA_m5C:0.999536712156989 7013 chr2 120436833 120436833 1 + C G rs542243250 120436835 + 120436815 120436855 41 CGAGCGGGAGGGACCCTTCTCCGGCCTGATGCGACCCGGTA CGAGCGGGAGGGACCCTTGTCCGGCCTGATGCGACCCGGTA < 41bp 1 0.471999911330262 1 0.750213265419006 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM177 ENSG00000144120 UTR5 Human protein_coding chr2:120436835 chr2:120436833 . . 0 19 hm5C_associated_SNPs_3931 0 0 1 0 1 Ribosome 1 0.500231643921092 0.499573469161988 0.999536712157815 hm5C_site_7013 DeepMRMD:0.499573469161988;iRNA_m5C:0.999536712157815 Height 7014 chr2 120439459 120439459 1 + C A rs4849797 120439440 + 120439420 120439460 41 TCTGGAGGGCCCTGTTGGAGCCTTTGGACCTATAGCTCACG TCTGGAGGGCCCTGTTGGAGCCTTTGGACCTATAGCTCAAG < 41bp 1 0.0210367735726227 1 0.05145263671875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM177 ENSG00000144120 UTR3 Human protein_coding chr2:120439440 chr2:120439459 . . 0 40 hm5C_associated_SNPs_3932 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7014 DeepMRMD:1;iRNA_m5C:0.999536712157815 Height 7015 chr2 122288478 122288478 1 + C A rs144448852 122288487 + 122288467 122288507 41 TCTTGGGGTTGCGCTACTGTCCAATGAGCGCATAGTGAGGG TCTTGGGGTTGAGCTACTGTCCAATGAGCGCATAGTGAGGG < 41bp 1 0.573113756115221 1 0.147417515516281 experiment 0.853772487769557 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288487 chr2:122288478 . . 0 12 hm5C_associated_SNPs_3933 0 0 1 1 0 unknown 1 0.500231643921125 1 0.99953671215775 hm5C_site_7015 DeepMRMD:1;iRNA_m5C:0.99953671215775 7016 chr2 122288478 122288478 1 + C A rs144448852 122288497 + 122288477 122288517 41 GCGCTACTGTCCAATGAGCGCATAGTGAGGGCAGTACTGCT GAGCTACTGTCCAATGAGCGCATAGTGAGGGCAGTACTGCT < 41bp 1 0.470826118182216 1 0.150676608085632 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288497 chr2:122288478 . . 0 2 hm5C_associated_SNPs_3934 0 0 1 1 0 unknown 1 0.500231643921084 1 0.999536712157831 hm5C_site_7016 DeepMRMD:1;iRNA_m5C:0.999536712157831 7017 chr2 122288496 122288496 1 + G A rs77516008 122288487 + 122288467 122288507 41 TCTTGGGGTTGCGCTACTGTCCAATGAGCGCATAGTGAGGG TCTTGGGGTTGCGCTACTGTCCAATGAGCACATAGTGAGGG < 41bp 1 0.59259592327537 1 0.215417236089706 experiment 0.81480815344926 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288487 chr2:122288496 . . 0 30 hm5C_associated_SNPs_3935 0 0 1 0 0 unknown 1 0.500231643962634 1 0.999536712074732 hm5C_site_7017 DeepMRMD:1;iRNA_m5C:0.999536712074732 7018 chr2 122288496 122288496 1 + G A rs77516008 122288497 + 122288477 122288517 41 GCGCTACTGTCCAATGAGCGCATAGTGAGGGCAGTACTGCT GCGCTACTGTCCAATGAGCACATAGTGAGGGCAGTACTGCT < 41bp 1 0.530950084183628 1 0.0599301159381866 experiment 0.938099831632744 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288497 chr2:122288496 . . 0 20 hm5C_associated_SNPs_3936 0 0 1 0 0 unknown 1 0.500231643244129 1 0.999536713511742 hm5C_site_7018 DeepMRMD:1;iRNA_m5C:0.999536713511742 7019 chr2 122288496 122288496 1 + G A rs77516008 122288516 + 122288496 122288536 41 GCATAGTGAGGGCAGTACTGCTAACGCCTGAACAACACACC ACATAGTGAGGGCAGTACTGCTAACGCCTGAACAACACACC < 41bp 1 0.463061378404842 1 0.45443657040596 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288516 chr2:122288496 . . 0 1 hm5C_associated_SNPs_3938 0 0 1 0 0 unknown 1 0.5002316398737 1 0.999536720252599 hm5C_site_7019 DeepMRMD:1;iRNA_m5C:0.999536720252599 7020 chr2 122288498 122288498 1 + A C rs553096682 122288487 + 122288467 122288507 41 TCTTGGGGTTGCGCTACTGTCCAATGAGCGCATAGTGAGGG TCTTGGGGTTGCGCTACTGTCCAATGAGCGCCTAGTGAGGG < 41bp 1 0.60320479549753 1 0.20080292224884 experiment 0.793590409004941 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288487 chr2:122288498 . . 0 32 hm5C_associated_SNPs_3939 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_7020 DeepMRMD:1;iRNA_m5C:0.999536712157815 7021 chr2 122288498 122288498 1 + A C rs553096682 122288497 + 122288477 122288517 41 GCGCTACTGTCCAATGAGCGCATAGTGAGGGCAGTACTGCT GCGCTACTGTCCAATGAGCGCCTAGTGAGGGCAGTACTGCT < 41bp 1 0.277141527310975 1 0.15103805065155 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288497 chr2:122288498 . . 0 22 hm5C_associated_SNPs_3940 0 0 1 0 0 unknown 1 0.500231645272193 1 0.999536709455614 hm5C_site_7021 DeepMRMD:1;iRNA_m5C:0.999536709455614 7022 chr2 122288498 122288498 1 + A C rs553096682 122288516 + 122288496 122288536 41 GCATAGTGAGGGCAGTACTGCTAACGCCTGAACAACACACC GCCTAGTGAGGGCAGTACTGCTAACGCCTGAACAACACACC < 41bp 1 0.475178205426417 1 0.456931978464127 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288516 chr2:122288498 . . 0 3 hm5C_associated_SNPs_3942 0 0 1 0 0 unknown 1 0.500231191239186 1 0.999537617521628 hm5C_site_7022 DeepMRMD:1;iRNA_m5C:0.999537617521628 7023 chr2 122288513 122288513 1 + C G rs115435830 122288497 + 122288477 122288517 41 GCGCTACTGTCCAATGAGCGCATAGTGAGGGCAGTACTGCT GCGCTACTGTCCAATGAGCGCATAGTGAGGGCAGTAGTGCT < 41bp 1 0.529012924576979 1 0.127527832984924 experiment 0.941974150846042 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288497 chr2:122288513 . . 0 37 hm5C_associated_SNPs_3943 0 0 1 0 0 unknown 1 0.500231643921132 1 0.999536712157736 hm5C_site_7023 DeepMRMD:1;iRNA_m5C:0.999536712157736 7024 chr2 122288513 122288513 1 + C G rs115435830 122288516 + 122288496 122288536 41 GCATAGTGAGGGCAGTACTGCTAACGCCTGAACAACACACC GCATAGTGAGGGCAGTAGTGCTAACGCCTGAACAACACACC < 41bp 1 0.483935720706506 1 0.341999351978302 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288516 chr2:122288513 . . 0 18 hm5C_associated_SNPs_3944 0 0 1 0 0 unknown 1 0.500231642236942 1 0.999536715526117 hm5C_site_7024 DeepMRMD:1;iRNA_m5C:0.999536715526117 7025 chr2 122288513 122288513 1 + C G rs115435830 122288531 + 122288511 122288551 41 TACTGCTAACGCCTGAACAACACACCCGCATCAACTAGAGC TAGTGCTAACGCCTGAACAACACACCCGCATCAACTAGAGC < 41bp 1 0.223601562035268 1 0.139378756284714 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288531 chr2:122288513 . . 0 3 hm5C_associated_SNPs_3946 0 0 1 0 0 unknown 1 0.500231644278298 1 0.999536711443404 hm5C_site_7025 DeepMRMD:1;iRNA_m5C:0.999536711443404 7026 chr2 122288513 122288513 1 + C G rs115435830 122288533 + 122288513 122288553 41 CTGCTAACGCCTGAACAACACACCCGCATCAACTAGAGCTT GTGCTAACGCCTGAACAACACACCCGCATCAACTAGAGCTT < 41bp 1 0.595329686270952 1 0.13052225112915 experiment 0.809340627458097 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288533 chr2:122288513 . . 0 1 hm5C_associated_SNPs_3947 0 0 1 0 0 unknown 1 0.500231389750944 1 0.999537220498111 hm5C_site_7026 DeepMRMD:1;iRNA_m5C:0.999537220498111 7027 chr2 122288523 122288523 1 + C G rs191916413 122288516 + 122288496 122288536 41 GCATAGTGAGGGCAGTACTGCTAACGCCTGAACAACACACC GCATAGTGAGGGCAGTACTGCTAACGCGTGAACAACACACC < 41bp 1 0.512019243427829 1 0.424452543258667 experiment 0.975961513144342 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288516 chr2:122288523 . . 0 28 hm5C_associated_SNPs_3949 0 0 1 0 0 unknown 1 0.50023147960663 1 0.99953704078674 hm5C_site_7027 DeepMRMD:1;iRNA_m5C:0.99953704078674 7028 chr2 122288523 122288523 1 + C G rs191916413 122288531 + 122288511 122288551 41 TACTGCTAACGCCTGAACAACACACCCGCATCAACTAGAGC TACTGCTAACGCGTGAACAACACACCCGCATCAACTAGAGC < 41bp 1 0.250080111523557 1 0.166049599647522 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288531 chr2:122288523 . . 0 13 hm5C_associated_SNPs_3950 0 0 1 0 0 unknown 1 0.500231914386255 1 0.999536171227489 hm5C_site_7028 DeepMRMD:1;iRNA_m5C:0.999536171227489 7029 chr2 122288523 122288523 1 + C G rs191916413 122288533 + 122288513 122288553 41 CTGCTAACGCCTGAACAACACACCCGCATCAACTAGAGCTT CTGCTAACGCGTGAACAACACACCCGCATCAACTAGAGCTT < 41bp 1 0.589496468553289 1 0.11561906337738 experiment 0.821007062893422 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288533 chr2:122288523 . . 0 11 hm5C_associated_SNPs_3951 0 0 1 0 0 unknown 1 0.50023164118423 1 0.99953671763154 hm5C_site_7029 DeepMRMD:1;iRNA_m5C:0.99953671763154 7030 chr2 122288523 122288523 1 + C G rs191916413 122288536 + 122288516 122288556 41 CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTTTG CTAACGCGTGAACAACACACCCGCATCAACTAGAGCTTTTG < 41bp 1 0.597706634731155 1 0.0748287439346313 experiment 0.80458673053769 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288536 chr2:122288523 . . 0 8 hm5C_associated_SNPs_3952 0 0 1 0 0 unknown 1 0.500231990675364 1 0.999536018649271 hm5C_site_7030 DeepMRMD:1;iRNA_m5C:0.999536018649271 7031 chr2 122288523 122288523 1 + C G rs191916413 122288542 + 122288522 122288562 41 CCTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT CGTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT < 41bp 1 0.348754054639905 1 0.237081527709961 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288542 chr2:122288523 . . 0 2 hm5C_associated_SNPs_3953 0 0 1 0 0 unknown 1 0.500231855737837 1 0.999536288524325 hm5C_site_7031 DeepMRMD:1;iRNA_m5C:0.999536288524325 7032 chr2 122288538 122288538 1 + G A rs187757075 122288531 + 122288511 122288551 41 TACTGCTAACGCCTGAACAACACACCCGCATCAACTAGAGC TACTGCTAACGCCTGAACAACACACCCACATCAACTAGAGC < 41bp 1 0.204596422798313 1 0.24670997262001 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288531 chr2:122288538 . . 0 28 hm5C_associated_SNPs_3954 0 0 1 0 0 unknown 1 0.500232424966308 1 0.999535150067384 hm5C_site_7032 DeepMRMD:1;iRNA_m5C:0.999535150067384 7033 chr2 122288538 122288538 1 + G A rs187757075 122288533 + 122288513 122288553 41 CTGCTAACGCCTGAACAACACACCCGCATCAACTAGAGCTT CTGCTAACGCCTGAACAACACACCCACATCAACTAGAGCTT < 41bp 1 0.497167257967621 1 0.157486528158188 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288533 chr2:122288538 . . 0 26 hm5C_associated_SNPs_3955 0 0 1 0 0 unknown 1 0.500234877227708 1 0.999530245544585 hm5C_site_7033 DeepMRMD:1;iRNA_m5C:0.999530245544585 7034 chr2 122288538 122288538 1 + G A rs187757075 122288536 + 122288516 122288556 41 CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTTTG CTAACGCCTGAACAACACACCCACATCAACTAGAGCTTTTG < 41bp 1 0.404672803968355 1 0.0645059645175934 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288536 chr2:122288538 . . 0 23 hm5C_associated_SNPs_3956 0 0 1 0 0 unknown 1 0.50023043313576 1 0.99953913372848 hm5C_site_7034 DeepMRMD:1;iRNA_m5C:0.99953913372848 7035 chr2 122288538 122288538 1 + G A rs187757075 122288542 + 122288522 122288562 41 CCTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT CCTGAACAACACACCCACATCAACTAGAGCTTTTGCTTTAT < 41bp 1 0.416091843414039 1 0.219101130962372 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288542 chr2:122288538 . . 0 17 hm5C_associated_SNPs_3957 0 0 1 0 0 unknown 1 0.500231643660618 1 0.999536712678765 hm5C_site_7035 DeepMRMD:1;iRNA_m5C:0.999536712678765 7036 chr2 122288548 122288548 1 + G A rs367638364 122288531 + 122288511 122288551 41 TACTGCTAACGCCTGAACAACACACCCGCATCAACTAGAGC TACTGCTAACGCCTGAACAACACACCCGCATCAACTAAAGC < 41bp 1 0.213342240728392 1 0.158886969089508 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288531 chr2:122288548 . . 0 38 hm5C_associated_SNPs_3959 0 0 1 0 0 unknown 1 0.500237879098199 1 0.999524241803602 hm5C_site_7036 DeepMRMD:1;iRNA_m5C:0.999524241803602 7037 chr2 122288548 122288548 1 + G A rs367638364 122288533 + 122288513 122288553 41 CTGCTAACGCCTGAACAACACACCCGCATCAACTAGAGCTT CTGCTAACGCCTGAACAACACACCCGCATCAACTAAAGCTT < 41bp 1 0.550006974220845 1 0.120516300201416 experiment 0.89998605155831 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288533 chr2:122288548 . . 0 36 hm5C_associated_SNPs_3960 0 0 1 0 0 unknown 1 0.500231712971152 1 0.999536574057696 hm5C_site_7037 DeepMRMD:1;iRNA_m5C:0.999536574057696 7038 chr2 122288548 122288548 1 + G A rs367638364 122288536 + 122288516 122288556 41 CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTTTG CTAACGCCTGAACAACACACCCGCATCAACTAAAGCTTTTG < 41bp 1 0.540863710602094 1 0.106298059225082 experiment 0.918272578795811 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288536 chr2:122288548 . . 0 33 hm5C_associated_SNPs_3961 0 0 1 0 0 unknown 1 0.500232350133232 1 0.999535299733537 hm5C_site_7038 DeepMRMD:1;iRNA_m5C:0.999535299733537 7039 chr2 122288548 122288548 1 + G A rs367638364 122288542 + 122288522 122288562 41 CCTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT CCTGAACAACACACCCGCATCAACTAAAGCTTTTGCTTTAT < 41bp 1 0.371872256339966 1 0.234562963247299 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288542 chr2:122288548 . . 0 27 hm5C_associated_SNPs_3962 0 0 1 0 0 unknown 1 0.500231620617987 1 0.999536758764026 hm5C_site_7039 DeepMRMD:1;iRNA_m5C:0.999536758764026 7040 chr2 122288554 122288554 1 + T C rs145446412 122288536 + 122288516 122288556 41 CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTTTG CTAACGCCTGAACAACACACCCGCATCAACTAGAGCTTCTG < 41bp 1 0.56495780785429 1 0.072864294052124 experiment 0.870084384291419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288536 chr2:122288554 . . 0 39 hm5C_associated_SNPs_3963 0 0 1 9 0 unknown 1 0.500226291260171 1 0.999547417479658 hm5C_site_7040 DeepMRMD:1;iRNA_m5C:0.999547417479658 7041 chr2 122288554 122288554 1 + T C rs145446412 122288542 + 122288522 122288562 41 CCTGAACAACACACCCGCATCAACTAGAGCTTTTGCTTTAT CCTGAACAACACACCCGCATCAACTAGAGCTTCTGCTTTAT < 41bp 1 0.363404051946429 1 0.110762536525726 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288542 chr2:122288554 . . 0 33 hm5C_associated_SNPs_3964 0 0 1 9 0 unknown 1 0.500231326557713 1 0.999537346884575 hm5C_site_7041 DeepMRMD:1;iRNA_m5C:0.999537346884575 7042 chr2 122288554 122288554 1 + T C rs145446412 122288570 + 122288550 122288590 41 GCTTTTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA GCTTCTGCTTTATTTTGGTGCAATTTTTGGAAAAATGAAAA < 41bp 1 0.106780404343198 1 0.0839719474315643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU4ATAC ENSG00000264229 ncRNA_exonic Human snRNA chr2:122288570 chr2:122288554 . . 0 5 hm5C_associated_SNPs_3965 0 0 1 9 0 unknown 1 0.500232038081023 1 0.999535923837954 hm5C_site_7042 DeepMRMD:1;iRNA_m5C:0.999535923837954 7043 chr2 122408255 122408255 1 + G A rs557344818 122408254 + 122408234 122408274 41 CCGCATCAGGCTCCTATGCACGCCGGTAATTTGATGTGTTG CCGCATCAGGCTCCTATGCACACCGGTAATTTGATGTGTTG < 41bp 1 0.698320841883097 1 0.0569392442703247 experiment 0.603358316233807 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NIFK-AS1 ENSG00000236859 ncRNA_exonic Human antisense chr2:122408254 chr2:122408255 . . 0 22 hm5C_associated_SNPs_3966 0 0 0 1 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_7043 DeepMRMD:1;iRNA_m5C:0.999536712157815 7044 chr2 122408255 122408255 1 + G A rs557344818 122408257 + 122408237 122408277 41 CATCAGGCTCCTATGCACGCCGGTAATTTGATGTGTTGAGA CATCAGGCTCCTATGCACACCGGTAATTTGATGTGTTGAGA < 41bp 1 0.554198640206582 1 0.446872711181641 experiment 0.891602719586835 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIFK-AS1 ENSG00000236859 ncRNA_exonic Human antisense chr2:122408257 chr2:122408255 . . 0 19 hm5C_associated_SNPs_3967 0 0 0 1 1 unknown 1 0.500231643921076 1 0.999536712157848 hm5C_site_7044 DeepMRMD:1;iRNA_m5C:0.999536712157848 7045 chr2 128184770 128184770 1 + T A rs5937 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGAAGAGT < 41bp 1 0.353917174251219 1 0.457646727561951 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184770 nonsynonymous SNV 0.652 1 37 hm5C_associated_SNPs_3969 0 0 1 0 2 nucleus 1 0.500231643920913 1 0.999536712158175 hm5C_site_7045 DeepMRMD:1;iRNA_m5C:0.999536712158175 7046 chr2 128950217 128950217 1 + C T rs11542864 128950203 + 128950183 128950223 41 TTATGTTCTGTGTACAGTGGCATTTGATTGAGATCAAAGCC TTATGTTCTGTGTACAGTGGCATTTGATTGAGATTAAAGCC < 41bp 1 0.046898379001215 1 0.0508525669574738 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UGGT1 ENSG00000136731 UTR3 Human protein_coding chr2:128950203 chr2:128950217 . . 0 35 hm5C_associated_SNPs_3970 0 0 1 0 0 Nucleus 1 0.500233643739378 1 0.999532712521244 hm5C_site_7046 DeepMRMD:1;iRNA_m5C:0.999532712521244 7047 chr2 128950504 128950504 1 + G A rs142787826 128950507 + 128950487 128950527 41 TTACACCTGTAATCCCAGCACTTTGGGAAGCCGAGGCGGGC TTACACCTGTAATCCCAACACTTTGGGAAGCCGAGGCGGGC < 41bp 1 0.237757558216931 1 0.187947869300842 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UGGT1 ENSG00000136731 UTR3 Human protein_coding chr2:128950507 chr2:128950504 . . 0 18 hm5C_associated_SNPs_3971 0 0 0 0 0 Nucleus 1 0.500231643934523 1 0.999536712130954 hm5C_site_7047 DeepMRMD:1;iRNA_m5C:0.999536712130954 7048 chr2 128950504 128950504 1 + G A rs142787826 128950517 + 128950497 128950537 41 AATCCCAGCACTTTGGGAAGCCGAGGCGGGCGGATTATGAG AATCCCAACACTTTGGGAAGCCGAGGCGGGCGGATTATGAG < 41bp 1 0.52371148229295 1 0.763865947723389 experiment 0.9525770354141 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UGGT1 ENSG00000136731 UTR3 Human protein_coding chr2:128950517 chr2:128950504 . . 0 8 hm5C_associated_SNPs_3972 0 0 0 0 0 Nucleus 1 0.500231643921092 0.472268104553222 0.999536712157815 hm5C_site_7048 DeepMRMD:0.472268104553222;iRNA_m5C:0.999536712157815 7049 chr2 128950504 128950504 1 + G A rs142787826 128950518 + 128950498 128950538 41 ATCCCAGCACTTTGGGAAGCCGAGGCGGGCGGATTATGAGG ATCCCAACACTTTGGGAAGCCGAGGCGGGCGGATTATGAGG < 41bp 1 0.683044237418024 1 0.870714426040649 experiment 0.633911525163952 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UGGT1 ENSG00000136731 UTR3 Human protein_coding chr2:128950518 chr2:128950504 . . 0 7 hm5C_associated_SNPs_3973 0 0 0 0 0 Nucleus 1 0.500231643920992 0.258571147918702 0.999536712158017 hm5C_site_7049 DeepMRMD:0.258571147918702;iRNA_m5C:0.999536712158017 7050 chr2 128950528 128950528 1 + G A rs537301145 128950517 + 128950497 128950537 41 AATCCCAGCACTTTGGGAAGCCGAGGCGGGCGGATTATGAG AATCCCAGCACTTTGGGAAGCCGAGGCGGGCAGATTATGAG < 41bp 1 0.536711806818396 1 0.752420604228973 experiment 0.926576386363209 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UGGT1 ENSG00000136731 UTR3 Human protein_coding chr2:128950517 chr2:128950528 . . 0 32 hm5C_associated_SNPs_3974 0 0 0 0 0 Nucleus 1 0.500231643921092 0.495158791542054 0.999536712157815 hm5C_site_7050 DeepMRMD:0.495158791542054;iRNA_m5C:0.999536712157815 7051 chr2 128950528 128950528 1 + G A rs537301145 128950527 + 128950507 128950547 41 CTTTGGGAAGCCGAGGCGGGCGGATTATGAGGTCAAGAGAT CTTTGGGAAGCCGAGGCGGGCAGATTATGAGGTCAAGAGAT < 41bp 1 0.421223904449586 1 0.471537202596664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UGGT1 ENSG00000136731 UTR3 Human protein_coding chr2:128950527 chr2:128950528 . . 0 22 hm5C_associated_SNPs_3976 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7051 DeepMRMD:1;iRNA_m5C:0.999536712157815 7052 chr2 128951726 128951726 1 + G A rs147635000 128951745 + 128951725 128951765 41 GGTGTGACCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTC GATGTGACCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTC < 41bp 1 0.347060920580295 1 0.300441801548004 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UGGT1 ENSG00000136731 UTR3 Human protein_coding chr2:128951745 chr2:128951726 . . 0 2 hm5C_associated_SNPs_3979 0 0 0 0 0 Nucleus 1 0.500231605451281 1 0.999536789097438 hm5C_site_7052 DeepMRMD:1;iRNA_m5C:0.999536789097438 7053 chr2 128951815 128951815 1 + C T rs186787581 128951798 + 128951778 128951818 41 TGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGTGTGCGCC TGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGTGTGTGCC < 41bp 1 0.695754035104067 1 0.582693874835968 experiment 0.608491929791866 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control UGGT1 ENSG00000136731 UTR3 Human protein_coding chr2:128951798 chr2:128951815 . . 0 38 hm5C_associated_SNPs_3980 0 0 0 0 0 Nucleus 1 0.500231643921092 0.834612250328064 0.999536712157815 hm5C_site_7053 DeepMRMD:0.834612250328064;iRNA_m5C:0.999536712157815 7054 chr2 128952092 128952092 1 + C T rs191591381 128952072 + 128952052 128952092 41 GGTGGTCTCGAACTCCTGACCTCAAGTGATCCACCCGCATC GGTGGTCTCGAACTCCTGACCTCAAGTGATCCACCCGCATT < 41bp 1 0.695973109406911 1 0.769453406333923 experiment 0.608053781186178 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UGGT1 ENSG00000136731 UTR3 Human protein_coding chr2:128952072 chr2:128952092 . . 0 41 hm5C_associated_SNPs_3981 0 0 0 0 0 Nucleus 1 0.500231628352704 0.461093187332154 0.999536743294592 hm5C_site_7054 DeepMRMD:0.461093187332154;iRNA_m5C:0.999536743294592 7055 chr2 128952092 128952092 1 + C T rs191591381 128952074 + 128952054 128952094 41 TGGTCTCGAACTCCTGACCTCAAGTGATCCACCCGCATCGG TGGTCTCGAACTCCTGACCTCAAGTGATCCACCCGCATTGG < 41bp 1 0.657268766787506 1 0.267406523227692 experiment 0.685462466424989 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UGGT1 ENSG00000136731 UTR3 Human protein_coding chr2:128952074 chr2:128952092 . . 0 39 hm5C_associated_SNPs_3982 0 0 0 0 0 Nucleus 1 0.500230911007653 1 0.999538177984693 hm5C_site_7055 DeepMRMD:1;iRNA_m5C:0.999538177984693 7056 chr2 131905130 131905130 1 + G C rs13410017 131905142 + 131905122 131905162 41 AGCACTTTGAGAGACCGAGGCGGGCGGATCACGAGGTCAGG AGCACTTTCAGAGACCGAGGCGGGCGGATCACGAGGTCAGG < 41bp 1 0.66964099922618 1 0.806164562702179 experiment 0.660718001547639 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131905142 chr2:131905130 . . 0 9 hm5C_associated_SNPs_3987 0 0 0 0 0 Ribosome 1 0.500231643921093 0.387670874595642 0.999536712157813 hm5C_site_7056 DeepMRMD:0.387670874595642;iRNA_m5C:0.999536712157813 7057 chr2 131905139 131905139 1 + A G rs113368549 131905142 + 131905122 131905162 41 AGCACTTTGAGAGACCGAGGCGGGCGGATCACGAGGTCAGG AGCACTTTGAGAGACCGGGGCGGGCGGATCACGAGGTCAGG < 41bp 1 0.635242781898483 1 0.708729386329651 experiment 0.729514436203034 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131905142 chr2:131905139 . . 0 18 hm5C_associated_SNPs_3988 0 0 0 0 0 Ribosome 1 0.500231643941905 0.582541227340698 0.99953671211619 hm5C_site_7057 DeepMRMD:0.582541227340698;iRNA_m5C:0.99953671211619 7058 chr2 131906250 131906250 1 + C G rs16856546 131906238 + 131906218 131906258 41 ACCTAGTGATGACCACGGGTCTGCTTTTCTCTCTGATCCTA ACCTAGTGATGACCACGGGTCTGCTTTTCTCTGTGATCCTA < 41bp 1 0.476454882281298 1 0.0669590532779694 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906238 chr2:131906250 . . 0 33 hm5C_associated_SNPs_3989 0 0 1 1 0 Ribosome 1 0.500231643965704 1 0.999536712068592 hm5C_site_7058 DeepMRMD:1;iRNA_m5C:0.999536712068592 7059 chr2 131906250 131906250 1 + C G rs16856546 131906241 + 131906221 131906261 41 TAGTGATGACCACGGGTCTGCTTTTCTCTCTGATCCTAGGG TAGTGATGACCACGGGTCTGCTTTTCTCTGTGATCCTAGGG < 41bp 1 0.120334374816329 1 0.0328963398933411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906241 chr2:131906250 . . 0 30 hm5C_associated_SNPs_3990 0 0 1 1 0 Ribosome 1 0.500231643281602 1 0.999536713436797 hm5C_site_7059 DeepMRMD:1;iRNA_m5C:0.999536713436797 7060 chr2 131906250 131906250 1 + C G rs16856546 131906246 + 131906226 131906266 41 ATGACCACGGGTCTGCTTTTCTCTCTGATCCTAGGGGACTT ATGACCACGGGTCTGCTTTTCTCTGTGATCCTAGGGGACTT < 41bp 1 0.588651599714076 1 0.562032461166382 experiment 0.822696800571848 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906246 chr2:131906250 . . 0 25 hm5C_associated_SNPs_3991 0 0 1 1 0 Ribosome 1 0.500231643921092 0.875935077667236 0.999536712157815 hm5C_site_7060 DeepMRMD:0.875935077667236;iRNA_m5C:0.999536712157815 7061 chr2 131906250 131906250 1 + C G rs16856546 131906255 + 131906235 131906275 41 GGTCTGCTTTTCTCTCTGATCCTAGGGGACTTGTTGACATG GGTCTGCTTTTCTCTGTGATCCTAGGGGACTTGTTGACATG < 41bp 1 0.265671565935996 1 0.392403036355972 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906255 chr2:131906250 . . 0 16 hm5C_associated_SNPs_3993 0 0 1 1 0 Ribosome 1 0.5002300814348 1 0.999539837130401 hm5C_site_7061 DeepMRMD:1;iRNA_m5C:0.999539837130401 7062 chr2 131906250 131906250 1 + C G rs16856546 131906256 + 131906236 131906276 41 GTCTGCTTTTCTCTCTGATCCTAGGGGACTTGTTGACATGG GTCTGCTTTTCTCTGTGATCCTAGGGGACTTGTTGACATGG < 41bp 1 0.692205032017063 1 0.509546279907227 experiment 0.615589935965874 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906256 chr2:131906250 . . 0 15 hm5C_associated_SNPs_3994 0 0 1 1 0 Ribosome 1 0.50023164392109 0.980907440185546 0.999536712157819 hm5C_site_7062 DeepMRMD:0.980907440185546;iRNA_m5C:0.999536712157819 7063 chr2 131906250 131906250 1 + C G rs16856546 131906264 + 131906244 131906284 41 TTCTCTCTGATCCTAGGGGACTTGTTGACATGGGAGTGTCT TTCTCTGTGATCCTAGGGGACTTGTTGACATGGGAGTGTCT < 41bp 1 0.240566731170908 1 0.0371639132499695 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHB2 ENSG00000115762 UTR3 Human protein_coding chr2:131906264 chr2:131906250 . . 0 7 hm5C_associated_SNPs_3995 0 0 1 1 0 Ribosome 1 0.500231507098613 1 0.999536985802773 hm5C_site_7063 DeepMRMD:1;iRNA_m5C:0.999536985802773 7064 chr2 136511425 136511425 1 + A T rs567855089 136511411 + 136511391 136511431 41 AGTTTTTAAAATGTGAATATCTGAAAAACAATATAGATCAG AGTTTTTAAAATGTGAATATCTGAAAAACAATATTGATCAG < 41bp 1 0.619028764720494 1 0.362825691699982 experiment 0.761942470559013 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UBXN4 ENSG00000144224 UTR3 Human protein_coding chr2:136511411 chr2:136511425 . . 0 35 hm5C_associated_SNPs_3998 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643794485 1 0.999536712411029 hm5C_site_7064 DeepMRMD:1;iRNA_m5C:0.999536712411029 7065 chr2 149632883 149632883 1 + C A rs7582522 149632866 + 149632846 149632886 41 GGTCTGAGCCGGGCGAGGCTCGCTCCCTGCGCATCGCCTCC GGTCTGAGCCGGGCGAGGCTCGCTCCCTGCGCATCGCATCC < 41bp 1 0.338064828366213 1 0.0873278975486755 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KIF5C ENSG00000231079 ncRNA_intronic Human antisense chr2:149632866 chr2:149632883 . . 0 38 hm5C_associated_SNPs_4001 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7065 DeepMRMD:1;iRNA_m5C:0.999536712157815 7066 chr2 152266465 152266465 1 + G A rs75732944 152266463 + 152266443 152266483 41 GCGCCGCACGCGTGAGTAAACAGCCGGAGCTGGGAAAGTCG GCGCCGCACGCGTGAGTAAACAACCGGAGCTGGGAAAGTCG < 41bp 1 0.565215806599422 1 0.179571479558945 experiment 0.869568386801156 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RIF1 ENSG00000080345 UTR5 Human protein_coding chr2:152266463 chr2:152266465 . . 0 23 hm5C_associated_SNPs_4002 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7066 DeepMRMD:1;iRNA_m5C:0.999536712157815 7067 chr2 153505714 153505714 1 + A G rs139450099 153505709 + 153505689 153505729 41 CTTGGTGAAGGTCCCTTTTCCTTGGATGTGTAGTTATATGA CTTGGTGAAGGTCCCTTTTCCTTGGGTGTGTAGTTATATGA < 41bp 1 0.449002993664431 1 0.27044090628624 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FMNL2 ENSG00000157827 UTR3 Human protein_coding chr2:153505709 chr2:153505714 . . 0 26 hm5C_associated_SNPs_4004 0 0 1 2 0 Ribosome 1 0.500231643920963 1 0.999536712158075 hm5C_site_7067 DeepMRMD:1;iRNA_m5C:0.999536712158075 7068 chr2 153575305 153575305 1 + G T rs116506483 153575297 + 153575277 153575317 41 GGATGCGACCAAGTGGCCCGCGACCTGCGGGCGGAGTTCTC GGATGCGACCAAGTGGCCCGCGACCTGCTGGCGGAGTTCTC < 41bp 1 0.524596540291505 1 0.13776421546936 experiment 0.95080691941699 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARL6IP6 ENSG00000177917 CDS Human protein_coding chr2:153575297 chr2:153575305 nonsynonymous SNV 0.994 2 29 hm5C_associated_SNPs_4005 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7068 DeepMRMD:1;iRNA_m5C:0.999536712157815 7069 chr2 157406249 157406249 1 + G A rs2116665 157406248 + 157406228 157406268 41 ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC ACCCCCAGACAGGGAAAGTGCATGTGAGCGGCGCACGGTGC < 41bp 1 0.560378929551311 1 0.412186920642853 experiment 0.879242140897379 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406248 chr2:157406249 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_4006 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643973856 1 0.999536712052287 hm5C_site_7069 DeepMRMD:1;iRNA_m5C:0.999536712052287 7070 chr2 157439561 157439561 1 + A G rs184834240 157439565 + 157439545 157439585 41 CACTAGAAAACATTCCAAAACTTTAAGGTGTTGGTGTATTT CACTAGAAAACATTCCGAAACTTTAAGGTGTTGGTGTATTT < 41bp 1 0.108438982773803 1 0.0760300159454346 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPD2 ENSG00000115159 UTR3 Human protein_coding chr2:157439565 chr2:157439561 . . 0 17 hm5C_associated_SNPs_4007 0 0 1 3 0 Endoplasmic reticulum 1 0.500231644296126 1 0.999536711407748 hm5C_site_7070 DeepMRMD:1;iRNA_m5C:0.999536711407748 7071 chr2 159857608 159857608 1 + A G rs78057739 159857616 + 159857596 159857636 41 TGACTGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAA TGACTGCTGGGCGGGAACGTCTCTCAGGAGAAAGAGTGGAA < 41bp 1 0.160933271267614 1 0.118828743696213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TANC1 ENSG00000115183 UTR5 Human protein_coding chr2:159857616 chr2:159857608 . . 0 13 hm5C_associated_SNPs_4008 0 0 1 0 2 Nucleus 1 0.500231519720562 1 0.999536960558877 hm5C_site_7071 DeepMRMD:1;iRNA_m5C:0.999536960558877 7072 chr2 159857608 159857608 1 + A G rs78057739 159857618 + 159857598 159857638 41 ACTGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAAGA ACTGCTGGGCGGGAACGTCTCTCAGGAGAAAGAGTGGAAGA < 41bp 1 0.577762772592949 1 0.240316569805145 experiment 0.844474454814102 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TANC1 ENSG00000115183 UTR5 Human protein_coding chr2:159857618 chr2:159857608 . . 0 11 hm5C_associated_SNPs_4009 0 0 1 0 2 Nucleus 1 0.500231643922803 1 0.999536712154395 hm5C_site_7072 DeepMRMD:1;iRNA_m5C:0.999536712154395 7073 chr2 160087070 160087070 1 + C G rs114821645 160087089 + 160087069 160087109 41 GCGGTACAGCTGAGCACAGACCCCGCAACACGCCGTTCATG GGGGTACAGCTGAGCACAGACCCCGCAACACGCCGTTCATG < 41bp 1 0.234853688205807 1 0.241383850574493 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160087089 chr2:160087070 nonsynonymous SNV 0.000 1 2 hm5C_associated_SNPs_4011 0 0 0 0 0 Nucleus 1 0.500231648772845 1 0.99953670245431 hm5C_site_7073 DeepMRMD:1;iRNA_m5C:0.99953670245431 7074 chr2 169630178 169630178 1 + A G rs140610236 169630185 + 169630165 169630205 41 CGCCCTTGAAGAAAACGCAGCAAAATATTTTAAAATGAAGA CGCCCTTGAAGAAGACGCAGCAAAATATTTTAAAATGAAGA < 41bp 1 0.267784274196112 1 0.418375730514526 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CERS6-AS1 ENSG00000227617 ncRNA_exonic Human processed_transcript chr2:169630185 chr2:169630178 . . 0 14 hm5C_associated_SNPs_4013 0 0 1 0 0 unknown 1 0.500231644956871 1 0.999536710086258 hm5C_site_7074 DeepMRMD:1;iRNA_m5C:0.999536710086258 7075 chr2 170361375 170361375 1 + A G rs372350897 170361372 + 170361352 170361392 41 ATTCCTCAGGCCCGGGCGCTCCTACAGCAGTGCCTGCACGC ATTCCTCAGGCCCGGGCGCTCCTGCAGCAGTGCCTGCACGC < 41bp 1 0.316250020653787 1 0.509176969528198 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BBS5 ENSG00000163093 UTR3 Human protein_coding chr2:170361372 chr2:170361375 . . 0 24 hm5C_associated_SNPs_4014 0 0 0 0 0 Nucleus 1 0.500231643921085 0.981646060943604 0.99953671215783 hm5C_site_7075 DeepMRMD:0.981646060943604;iRNA_m5C:0.99953671215783 7076 chr2 173366607 173366607 1 + G A rs16860616 173366597 + 173366577 173366617 41 TGATAAAGAGAGGCTTACTTCTGATGCATAGTATTGATCTA TGATAAAGAGAGGCTTACTTCTGATGCATAATATTGATCTA < 41bp 1 0.478043671196042 1 0.665200591087341 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173366597 chr2:173366607 synonymous SNV . 0 31 hm5C_associated_SNPs_4015 1 0 0 0 1 Nucleus 1 0.50023158334964 0.669598817825318 0.99953683330072 hm5C_site_7076 DeepMRMD:0.669598817825318;iRNA_m5C:0.99953683330072 Epidermolysis bullosa junctionalis with pyloric atresia Epidermolysis bullosa junctionalis with pyloric atresia 7077 chr2 173451103 173451103 1 + G A rs555187654 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCGTGTTGAGACCTCCCACGCAGTGCCTCTGGT < 41bp 1 0.295519898018833 1 0.415821522474289 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451103 nonsynonymous SNV 0.125 1 26 hm5C_associated_SNPs_4016 0 0 1 0 2 Ribosome 1 0.500229673324751 1 0.999540653350498 hm5C_site_7077 DeepMRMD:1;iRNA_m5C:0.999540653350498 7078 chr2 173940620 173940620 1 + A G rs62175800 173940619 + 173940599 173940639 41 GAATGTTCAACTCCTAACTGCAGCGGAAACGTGGGAGCCGC GAATGTTCAACTCCTAACTGCGGCGGAAACGTGGGAGCCGC < 41bp 1 0.657561117810523 1 0.695852637290955 experiment 0.684877764378955 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K20 ENSG00000091436 UTR5 Human protein_coding chr2:173940619 chr2:173940620 . . 0 22 hm5C_associated_SNPs_4017 0 0 1 0 0 unknown 1 0.500231643921093 0.60829472541809 0.999536712157815 hm5C_site_7078 DeepMRMD:0.60829472541809;iRNA_m5C:0.999536712157815 7079 chr2 174087947 174087947 1 + T C rs549683299 174087966 + 174087946 174087986 41 ATAGTGATGAAGAAAGGGATCAGAGTCTGACTGTCACTCAG ACAGTGATGAAGAAAGGGATCAGAGTCTGACTGTCACTCAG < 41bp 1 0.658795605871325 1 0.726342558860779 experiment 0.68240878825735 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP3K20-AS1 ENSG00000238133 ncRNA_intronic Human antisense chr2:174087966 chr2:174087947 . . 0 2 hm5C_associated_SNPs_4018 0 0 1 0 0 unknown 1 0.500231643929532 0.547314882278442 0.999536712140935 hm5C_site_7079 DeepMRMD:0.547314882278442;iRNA_m5C:0.999536712140935 7080 chr2 174128561 174128561 1 + A T rs188158548 174128572 + 174128552 174128592 41 AAGCAGTCCAACTTGCCATTCAGACATTATTCACCAATTCA AAGCAGTCCTACTTGCCATTCAGACATTATTCACCAATTCA < 41bp 1 0.0959294851237722 1 0.158908188343048 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP3K20 ENSG00000091436 CDS Human protein_coding chr2:174128572 chr2:174128561 nonsynonymous SNV 0.977 2 10 hm5C_associated_SNPs_4019 0 0 0 0 1 unknown 1 0.500229585867875 1 0.999540828264249 hm5C_site_7080 DeepMRMD:1;iRNA_m5C:0.999540828264249 7081 chr2 174224147 174224147 1 + C T rs544881819 174224138 + 174224118 174224158 41 CCAAGGCCAGATGTCACTAACGAACTGGCCGGTATTTTTCA CCAAGGCCAGATGTCACTAACGAACTGGCTGGTATTTTTCA < 41bp 1 0.299126934787534 1 0.167586773633957 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174224138 chr2:174224147 synonymous SNV . 0 30 hm5C_associated_SNPs_4020 0 0 1 0 2 Nucleus 1 0.500231692849776 1 0.999536614300448 hm5C_site_7081 DeepMRMD:1;iRNA_m5C:0.999536614300448 7082 chr2 176972562 176972562 1 + C G rs541864847 176972551 + 176972531 176972571 41 GCGCCGGGGCCGCCGCACGGCCCCGCGGGCGCCGCCTCCAA GCGCCGGGGCCGCCGCACGGCCCCGCGGGCGGCGCCTCCAA < 41bp 1 0.609751838013748 1 0.416267722845078 experiment 0.780496323972504 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HOXD11 ENSG00000128713 CDS Human protein_coding chr2:176972551 chr2:176972562 nonsynonymous SNV 0.985 1 32 hm5C_associated_SNPs_4023 0 0 1 0 0 exosome 1 0.50023164392127 1 0.99953671215746 hm5C_site_7082 DeepMRMD:1;iRNA_m5C:0.99953671215746 7083 chr2 176972562 176972562 1 + C G rs541864847 176972552 + 176972532 176972572 41 CGCCGGGGCCGCCGCACGGCCCCGCGGGCGCCGCCTCCAAC CGCCGGGGCCGCCGCACGGCCCCGCGGGCGGCGCCTCCAAC < 41bp 1 0.501362503168923 1 0.377550601959229 experiment 0.997274993662154 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HOXD11 ENSG00000128713 CDS Human protein_coding chr2:176972552 chr2:176972562 nonsynonymous SNV 0.985 1 31 hm5C_associated_SNPs_4024 0 0 1 0 0 exosome 1 0.500231643927512 1 0.999536712144976 hm5C_site_7083 DeepMRMD:1;iRNA_m5C:0.999536712144976 7084 chr2 182758476 182758476 1 + A G rs187323152 182758467 + 182758447 182758487 41 TTGGACCCCAGATTTACAATCTAGCTGTAAATCAATCTCCC TTGGACCCCAGATTTACAATCTAGCTGTAGATCAATCTCCC < 41bp 1 0.0889940910987311 1 0.124087691307068 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSFA2 ENSG00000138434 intronic Human protein_coding chr2:182758467 chr2:182758476 . . 0 30 hm5C_associated_SNPs_4026 0 0 0 0 0 Ribosome 1 0.500246553863902 1 0.999506892272196 hm5C_site_7084 DeepMRMD:1;iRNA_m5C:0.999506892272196 7085 chr2 182758476 182758476 1 + A G rs187323152 182758471 + 182758451 182758491 41 ACCCCAGATTTACAATCTAGCTGTAAATCAATCTCCCAGTT ACCCCAGATTTACAATCTAGCTGTAGATCAATCTCCCAGTT < 41bp 1 0.287639224761881 1 0.105206072330475 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSFA2 ENSG00000138434 intronic Human protein_coding chr2:182758471 chr2:182758476 . . 0 26 hm5C_associated_SNPs_4027 0 0 0 0 0 Ribosome 1 0.500231643950448 1 0.999536712099105 hm5C_site_7085 DeepMRMD:1;iRNA_m5C:0.999536712099105 7086 chr2 183581120 183581120 1 + G A rs143023681 183581113 + 183581093 183581133 41 GTCGGAGAGTGCGTGTGCTTCTCTCCTGCACGCGGTGCTTG GTCGGAGAGTGCGTGTGCTTCTCTCCTACACGCGGTGCTTG < 41bp 1 0.392934667354189 1 0.49871751666069 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC10 ENSG00000077232 UTR5 Human protein_coding chr2:183581113 chr2:183581120 . . 0 28 hm5C_associated_SNPs_4028 0 0 1 0 1 Ribosome 1 0.500231645248175 1 0.999536709503649 hm5C_site_7086 DeepMRMD:1;iRNA_m5C:0.999536709503649 7087 chr2 187541575 187541575 1 + G A rs140775791 187541563 + 187541543 187541583 41 ACCACTAATGTCACCTGGGGCATTCAGCCAGCGCCCATGCC ACCACTAATGTCACCTGGGGCATTCAGCCAGCACCCATGCC < 41bp 1 0.0246297176329792 1 0.0299030244350433 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGAV ENSG00000138448 CDS Human protein_coding chr2:187541563 chr2:187541575 synonymous SNV . 0 33 hm5C_associated_SNPs_4030 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921142 1 0.999536712157716 hm5C_site_7087 DeepMRMD:1;iRNA_m5C:0.999536712157716 ECG dimensions, brachial artery endothelial function, treadmill exercise responses 7088 chr2 189156634 189156634 1 + C T rs529730984 189156630 + 189156610 189156650 41 CGGGAGCGACCCGGAGTCCCCAGCCCCGCGTCCCAGCTGCC CGGGAGCGACCCGGAGTCCCCAGCTCCGCGTCCCAGCTGCC < 41bp 1 0.634885496196384 1 0.491828173398972 experiment 0.730229007607233 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GULP1 ENSG00000144366 UTR5 Human protein_coding chr2:189156630 chr2:189156634 . . 0 25 hm5C_associated_SNPs_4031 0 0 0 0 0 Ribosome 1 0.500231644010453 1 0.999536711979095 hm5C_site_7088 DeepMRMD:1;iRNA_m5C:0.999536711979095 ECG dimensions, brachial artery endothelial function, treadmill exercise responses 7089 chr2 190320083 190320083 1 + C A rs6737615 190320076 + 190320056 190320096 41 GCTGGTTTCAGTGAAACTGCCAAAATCCTCAAGCCAGGAAG GCTGGTTTCAGTGAAACTGCCAAAATCATCAAGCCAGGAAG < 41bp 1 0.636203314013569 1 0.542499303817749 experiment 0.727593371972862 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190320076 chr2:190320083 synonymous SNV . 0 28 hm5C_associated_SNPs_4032 0 0 1 0 2 Nucleus 1 0.500230888638333 0.915001392364502 0.999538222723334 hm5C_site_7089 DeepMRMD:0.915001392364502;iRNA_m5C:0.999538222723334 ECG dimensions, brachial artery endothelial function, treadmill exercise responses 7090 chr2 190323530 190323530 1 + A C rs1157910 190323529 + 190323509 190323549 41 GCATGCTAAAAACAATTTTACATGTGTAGCATGTCACCCAA GCATGCTAAAAACAATTTTACCTGTGTAGCATGTCACCCAA < 41bp 1 0.483031394531214 1 0.0753546357154846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190323529 chr2:190323530 synonymous SNV . 0 22 hm5C_associated_SNPs_4033 0 0 1 0 2 Nucleus 1 0.500231700667183 1 0.999536598665634 hm5C_site_7090 DeepMRMD:1;iRNA_m5C:0.999536598665634 ECG dimensions, brachial artery endothelial function, treadmill exercise responses 7091 chr2 190323530 190323530 1 + A C rs1157910 190323543 + 190323523 190323563 41 ATTTTACATGTGTAGCATGTCACCCAACGGAAGACTGCATC ATTTTACCTGTGTAGCATGTCACCCAACGGAAGACTGCATC < 41bp 1 0.512250862985728 1 0.0618441700935364 experiment 0.975498274028545 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190323543 chr2:190323530 synonymous SNV . 0 8 hm5C_associated_SNPs_4034 0 0 1 0 2 Nucleus 1 0.500231643939007 1 0.999536712121985 hm5C_site_7091 DeepMRMD:1;iRNA_m5C:0.999536712121985 ECG dimensions, brachial artery endothelial function, treadmill exercise responses 7092 chr2 190327346 190327346 1 + C G rs370964637 190327327 + 190327307 190327347 41 TATTGAACATATCTCAGTCTCGCCTGCAGGAGATTTATTCT TATTGAACATATCTCAGTCTCGCCTGCAGGAGATTTATTGT < 41bp 1 0.601980979495722 1 0.122766673564911 experiment 0.796038041008557 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190327327 chr2:190327346 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_4035 0 0 1 0 1 Nucleus 1 0.500231643880811 1 0.999536712238378 hm5C_site_7092 DeepMRMD:1;iRNA_m5C:0.999536712238378 ECG dimensions, brachial artery endothelial function, treadmill exercise responses 7093 chr2 191366127 191366127 1 + C A rs138175515 191366133 + 191366113 191366153 41 AACTGCAAACGTTACAACTGCAGCCAGAACAATGGCTGGGT AACTGCAAACGTTAAAACTGCAGCCAGAACAATGGCTGGGT < 41bp 1 0.686057769792006 1 0.198930114507675 experiment 0.627884460415988 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MFSD6 ENSG00000151690 UTR3 Human protein_coding chr2:191366133 chr2:191366127 . . 0 15 hm5C_associated_SNPs_4036 0 0 0 0 0 Ribosome 1 0.500231643920141 1 0.999536712159718 hm5C_site_7093 DeepMRMD:1;iRNA_m5C:0.999536712159718 7094 chr2 191524448 191524448 1 + G A rs191774044 191524463 + 191524443 191524483 41 CCCGCGTCCCCAAAGGAGAGCAGTGAGGCGCTGGATGCTGC CCCGCATCCCCAAAGGAGAGCAGTGAGGCGCTGGATGCTGC < 41bp 1 0.557713929128044 1 0.286995321512222 experiment 0.884572141743912 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAB1 ENSG00000138386 CDS Human protein_coding chr2:191524463 chr2:191524448 synonymous SNV . 0 6 hm5C_associated_SNPs_4037 0 0 1 0 0 Cytosol 1 0.500231643921432 1 0.999536712157136 hm5C_site_7094 DeepMRMD:1;iRNA_m5C:0.999536712157136 7095 chr2 192141726 192141726 1 + C G rs35294642 192141711 + 192141691 192141731 41 GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAGAA GAACCTCTCAATGAGGAGACCTTCATCAACAACCTGAAGAA < 41bp 1 0.357950031245195 1 0.167860358953476 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141711 chr2:192141726 synonymous SNV . 0 36 hm5C_associated_SNPs_4038 0 0 1 0 1 Nucleus 1 0.500234353746936 1 0.999531292506128 hm5C_site_7095 DeepMRMD:1;iRNA_m5C:0.999531292506128 7096 chr2 192160939 192160939 1 + C T rs16833579 192160923 + 192160903 192160943 41 AAAGTGGAAGAATACAGGAACAGAAATTTTTATGAACTGAG AAAGTGGAAGAATACAGGAACAGAAATTTTTATGAATTGAG < 41bp 1 0.301091173496315 1 0.389411926269531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192160923 chr2:192160939 synonymous SNV . 0 37 hm5C_associated_SNPs_4039 0 0 1 0 1 Nucleus 1 0.500231626217689 1 0.999536747564623 hm5C_site_7096 DeepMRMD:1;iRNA_m5C:0.999536747564623 7097 chr2 201171129 201171129 1 + G A rs74340199 201171130 + 201171110 201171150 41 GCGAGGAAGTCGGTCTGGAGCAAGCAAGCAAAGTGCGGAAG GCGAGGAAGTCGGTCTGGAACAAGCAAGCAAAGTGCGGAAG < 41bp 1 0.475122075524279 1 0.768072366714478 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPATS2L ENSG00000196141 UTR5 Human protein_coding chr2:201171130 chr2:201171129 . . 0 20 hm5C_associated_SNPs_4040 0 0 1 0 0 Nucleus 1 0.500231643424451 0.463855266571044 0.999536713151098 hm5C_site_7097 DeepMRMD:0.463855266571044;iRNA_m5C:0.999536713151098 7098 chr2 201756554 201756554 1 + G A rs114431057 201756538 + 201756518 201756558 41 TGGCAGAGCCACTATTTGAACCCAGATCTCTATGACGACAG TGGCAGAGCCACTATTTGAACCCAGATCTCTATGACAACAG < 41bp 1 0.33856661585407 1 0.0872772634029388 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIF3L1 ENSG00000196290 UTR5 Human protein_coding chr2:201756538 chr2:201756554 . . 0 37 hm5C_associated_SNPs_4041 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7098 DeepMRMD:1;iRNA_m5C:0.999536712157815 7099 chr2 201756554 201756554 1 + G A rs114431057 201756539 + 201756519 201756559 41 GGCAGAGCCACTATTTGAACCCAGATCTCTATGACGACAGC GGCAGAGCCACTATTTGAACCCAGATCTCTATGACAACAGC < 41bp 1 0.394997294617325 1 0.158687710762024 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIF3L1 ENSG00000196290 UTR5 Human protein_coding chr2:201756539 chr2:201756554 . . 0 36 hm5C_associated_SNPs_4042 0 0 1 0 0 Ribosome 1 0.500232658515728 1 0.999534682968544 hm5C_site_7099 DeepMRMD:1;iRNA_m5C:0.999534682968544 7100 chr2 201756554 201756554 1 + G A rs114431057 201756540 + 201756520 201756560 41 GCAGAGCCACTATTTGAACCCAGATCTCTATGACGACAGCT GCAGAGCCACTATTTGAACCCAGATCTCTATGACAACAGCT < 41bp 1 0.308788764952027 1 0.177335023880005 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIF3L1 ENSG00000196290 UTR5 Human protein_coding chr2:201756540 chr2:201756554 . . 0 35 hm5C_associated_SNPs_4043 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7100 DeepMRMD:1;iRNA_m5C:0.999536712157815 7101 chr2 202028718 202028718 1 + G A rs147979169 202028737 + 202028717 202028757 41 AGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAG AATGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAG < 41bp 1 0.118773529077469 1 0.161230385303497 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CFLAR ENSG00000003402 UTR3 Human protein_coding chr2:202028737 chr2:202028718 . . 0 2 hm5C_associated_SNPs_4044 0 0 0 0 0 Cytosol 1 0.500231625603415 1 0.999536748793169 hm5C_site_7101 DeepMRMD:1;iRNA_m5C:0.999536748793169 7102 chr2 202028718 202028718 1 + G A rs147979169 202028738 + 202028718 202028758 41 GTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGG ATGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGG < 41bp 1 0.583800991427043 1 0.756101310253143 experiment 0.832398017145915 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CFLAR ENSG00000003402 UTR3 Human protein_coding chr2:202028738 chr2:202028718 . . 0 1 hm5C_associated_SNPs_4045 0 0 0 0 0 Cytosol 1 0.500231071302928 0.487797379493714 0.999537857394145 hm5C_site_7102 DeepMRMD:0.487797379493714;iRNA_m5C:0.999537857394145 7103 chr2 202899957 202899957 1 + G A rs34908164 202899977 + 202899957 202899997 41 GGGCCTCAGATGGCAGGGGGCGTCCCGCCTTCCCCTTCTCA AGGCCTCAGATGGCAGGGGGCGTCCCGCCTTCCCCTTCTCA < 41bp 1 0.150148529206923 1 0.167692244052887 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZD7 ENSG00000155760 CDS Human protein_coding chr2:202899977 chr2:202899957 nonsynonymous SNV 0.059 0 1 hm5C_associated_SNPs_4047 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_7103 DeepMRMD:1;iRNA_m5C:0.999536712157815 7104 chr2 203156096 203156096 1 + A G rs530919021 203156092 + 203156072 203156112 41 TTTACACTTATTGTTGTTCACCTGATAACATAAATATGAGG TTTACACTTATTGTTGTTCACCTGGTAACATAAATATGAGG < 41bp 1 0.185803173194322 1 0.0735887289047241 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD11B ENSG00000271852 ncRNA_exonic Human snoRNA chr2:203156092 chr2:203156096 . . 0 25 hm5C_associated_SNPs_4048 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_7104 DeepMRMD:1;iRNA_m5C:0.999536712157815 7105 chr2 203499949 203499949 1 + G A rs193178985 203499939 + 203499919 203499959 41 GCGGGTGAGGCGCAATGGGTCCCCCACGCCGGCCGGCTCCC GCGGGTGAGGCGCAATGGGTCCCCCACGCCAGCCGGCTCCC < 41bp 1 0.402590949230748 1 0.0389758050441742 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM117B ENSG00000138439 CDS Human protein_coding chr2:203499939 chr2:203499949 synonymous SNV . 0 31 hm5C_associated_SNPs_4049 0 0 1 0 0 Nucleus 1 0.500231641725843 1 0.999536716548314 hm5C_site_7105 DeepMRMD:1;iRNA_m5C:0.999536716548314 7106 chr2 203499949 203499949 1 + G A rs193178985 203499940 + 203499920 203499960 41 CGGGTGAGGCGCAATGGGTCCCCCACGCCGGCCGGCTCCCT CGGGTGAGGCGCAATGGGTCCCCCACGCCAGCCGGCTCCCT < 41bp 1 0.663622106622807 1 0.0842366516590118 experiment 0.672755786754386 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM117B ENSG00000138439 CDS Human protein_coding chr2:203499940 chr2:203499949 synonymous SNV . 0 30 hm5C_associated_SNPs_4050 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7106 DeepMRMD:1;iRNA_m5C:0.999536712157815 7107 chr2 203499949 203499949 1 + G A rs193178985 203499941 + 203499921 203499961 41 GGGTGAGGCGCAATGGGTCCCCCACGCCGGCCGGCTCCCTT GGGTGAGGCGCAATGGGTCCCCCACGCCAGCCGGCTCCCTT < 41bp 1 0.364180268184657 1 0.0174531638622284 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM117B ENSG00000138439 CDS Human protein_coding chr2:203499941 chr2:203499949 synonymous SNV . 0 29 hm5C_associated_SNPs_4051 0 0 1 0 0 Nucleus 1 0.500231628906996 1 0.999536742186008 hm5C_site_7107 DeepMRMD:1;iRNA_m5C:0.999536742186008 7108 chr2 203879703 203879703 1 + A G rs540119987 203879684 + 203879664 203879704 41 GTTAGACGGCTGCCGGGCGGCGGCTGCCGCGCGGCACACAA GTTAGACGGCTGCCGGGCGGCGGCTGCCGCGCGGCACACGA < 41bp 1 0.623005969250693 1 0.827790856361389 experiment 0.753988061498615 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NBEAL1 ENSG00000144426 UTR5 Human protein_coding chr2:203879684 chr2:203879703 . . 0 40 hm5C_associated_SNPs_4054 0 0 1 0 1 chromatin 1 0.500231642814691 0.344418287277222 0.999536714370619 hm5C_site_7108 DeepMRMD:0.344418287277222;iRNA_m5C:0.999536714370619 7109 chr2 203879703 203879703 1 + A G rs540119987 203879690 + 203879670 203879710 41 CGGCTGCCGGGCGGCGGCTGCCGCGCGGCACACAATGTGAG CGGCTGCCGGGCGGCGGCTGCCGCGCGGCACACGATGTGAG < 41bp 1 0.47323416785908 1 0.47701695561409 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NBEAL1 ENSG00000144426 UTR5 Human protein_coding chr2:203879690 chr2:203879703 . . 0 34 hm5C_associated_SNPs_4055 0 0 1 0 1 chromatin 1 0.500231682928628 1 0.999536634142744 hm5C_site_7109 DeepMRMD:1;iRNA_m5C:0.999536634142744 7110 chr2 203879703 203879703 1 + A G rs540119987 203879691 + 203879671 203879711 41 GGCTGCCGGGCGGCGGCTGCCGCGCGGCACACAATGTGAGC GGCTGCCGGGCGGCGGCTGCCGCGCGGCACACGATGTGAGC < 41bp 1 0.649169521820622 1 0.843996286392212 experiment 0.701660956358757 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NBEAL1 ENSG00000144426 UTR5 Human protein_coding chr2:203879691 chr2:203879703 . . 0 33 hm5C_associated_SNPs_4056 0 0 1 0 1 chromatin 1 0.500231644093648 0.312007427215576 0.999536711812703 hm5C_site_7110 DeepMRMD:0.312007427215576;iRNA_m5C:0.999536711812703 7111 chr2 203879703 203879703 1 + A G rs540119987 203879698 + 203879678 203879718 41 GGGCGGCGGCTGCCGCGCGGCACACAATGTGAGCCCGGTGA GGGCGGCGGCTGCCGCGCGGCACACGATGTGAGCCCGGTGA < 41bp 1 0.351391190216936 1 0.288718640804291 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NBEAL1 ENSG00000144426 UTR5 Human protein_coding chr2:203879698 chr2:203879703 . . 0 26 hm5C_associated_SNPs_4057 0 0 1 0 1 chromatin 1 0.500231644126666 1 0.999536711746668 hm5C_site_7111 DeepMRMD:1;iRNA_m5C:0.999536711746668 7112 chr2 204053273 204053273 1 + G A rs114032912 204053265 + 204053245 204053285 41 TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTCA TGGCTATAAACAGAGGGGACCAGCTGCAATAGAGGCACTCA < 41bp 1 0.136190154057086 1 0.472508549690247 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204053265 chr2:204053273 nonsynonymous SNV 0.998 1 29 hm5C_associated_SNPs_4058 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_7112 DeepMRMD:1;iRNA_m5C:0.999536712157815 7113 chr2 204103736 204103736 1 + C G rs375917906 204103739 + 204103719 204103759 41 TGGGCCAGGCTGAGGCGCTGCTGCTGGAGCGGCCGATCCGA TGGGCCAGGCTGAGGCGGTGCTGCTGGAGCGGCCGATCCGA < 41bp 1 0.616176082822791 1 0.144709706306458 experiment 0.767647834354418 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP20A1 ENSG00000119004 UTR5 Human protein_coding chr2:204103739 chr2:204103736 . . 0 18 hm5C_associated_SNPs_4059 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7113 DeepMRMD:1;iRNA_m5C:0.999536712157815 7114 chr2 206481804 206481804 1 + T A rs10804149 206481800 + 206481780 206481820 41 TATATTTCATTAGCTAAAGTCAGGTCAGGGCAGGGCCAAGG TATATTTCATTAGCTAAAGTCAGGACAGGGCAGGGCCAAGG < 41bp 1 0.500028481031607 1 0.901949644088745 experiment 0.999943037936785 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PARD3B ENSG00000116117 UTR3 Human protein_coding chr2:206481800 chr2:206481804 . . 0 25 hm5C_associated_SNPs_4060 0 0 0 0 0 Nucleus 1 0.500231643921095 0.19610071182251 0.999536712157811 hm5C_site_7114 DeepMRMD:0.19610071182251;iRNA_m5C:0.999536712157811 7115 chr2 207024680 207024680 1 + C T rs180935095 207024663 + 207024643 207024683 41 GCGCCCACAATTTGCGCGCTCTCTTTCTGCTGCTCCCCAGC GCGCCCACAATTTGCGCGCTCTCTTTCTGCTGCTCCCTAGC < 41bp 1 0.333245194135996 1 0.0147961378097534 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 UTR5 Human protein_coding chr2:207024663 chr2:207024680 . . 0 38 hm5C_associated_SNPs_4061 0 0 1 0 1 chromatin 1 0.500231643921044 1 0.999536712157913 hm5C_site_7115 DeepMRMD:1;iRNA_m5C:0.999536712157913 7116 chr2 207024680 207024680 1 + C T rs180935095 207024693 + 207024673 207024713 41 TGCTCCCCAGCTCTCGGATACAGCCGACACCATGGGTTTCG TGCTCCCTAGCTCTCGGATACAGCCGACACCATGGGTTTCG < 41bp 1 0.552358166505063 1 0.292326182126999 experiment 0.895283666989874 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 UTR5 Human protein_coding chr2:207024693 chr2:207024680 . . 0 8 hm5C_associated_SNPs_4063 0 0 1 0 1 chromatin 1 0.500231643921081 1 0.999536712157838 hm5C_site_7116 DeepMRMD:1;iRNA_m5C:0.999536712157838 7117 chr2 207026649 207026649 1 + C A rs370161702 207026639 + 207026619 207026659 41 AAAATCAAATCACCATCTTTCGGCTGAGTTCGTGATGGATT AAAATCAAATCACCATCTTTCGGCTGAGTTAGTGATGGATT < 41bp 1 0.358470010588446 1 0.780875563621521 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD51 ENSG00000207047 ncRNA_exonic Human snoRNA chr2:207026639 chr2:207026649 . . 0 31 hm5C_associated_SNPs_4064 0 0 1 0 0 unknown 1 0.500231643921092 0.438248872756958 0.999536712157815 hm5C_site_7117 DeepMRMD:0.438248872756958;iRNA_m5C:0.999536712157815 7118 chr2 207026650 207026650 1 + G A rs374498694 207026639 + 207026619 207026659 41 AAAATCAAATCACCATCTTTCGGCTGAGTTCGTGATGGATT AAAATCAAATCACCATCTTTCGGCTGAGTTCATGATGGATT < 41bp 1 0.323448681162237 1 0.579312384128571 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD51 ENSG00000207047 ncRNA_exonic Human snoRNA chr2:207026639 chr2:207026650 . . 0 32 hm5C_associated_SNPs_4065 0 0 1 0 0 unknown 1 0.500231643921092 0.841375231742858 0.999536712157817 hm5C_site_7118 DeepMRMD:0.841375231742858;iRNA_m5C:0.999536712157817 7119 chr2 207026650 207026650 1 + G A rs374498694 207026649 + 207026629 207026669 41 CACCATCTTTCGGCTGAGTTCGTGATGGATTTGCTTTTTTC CACCATCTTTCGGCTGAGTTCATGATGGATTTGCTTTTTTC < 41bp 1 0.49393540740069 1 0.356756269931793 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD51 ENSG00000207047 ncRNA_exonic Human snoRNA chr2:207026649 chr2:207026650 . . 0 22 hm5C_associated_SNPs_4066 0 0 1 0 0 unknown 1 0.5002316441767 1 0.9995367116466 hm5C_site_7119 DeepMRMD:1;iRNA_m5C:0.9995367116466 7120 chr2 207175023 207175023 1 + A C rs150375195 207175003 + 207174983 207175023 41 GTGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGA GTGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGC < 41bp 1 0.0409017114450665 1 0.0275812745094299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207175003 chr2:207175023 nonsynonymous SNV 0.097 0 41 hm5C_associated_SNPs_4067 0 0 0 0 0 Nucleus 1 0.500231642413766 1 0.999536715172469 hm5C_site_7120 DeepMRMD:1;iRNA_m5C:0.999536715172469 7121 chr2 207175023 207175023 1 + A C rs150375195 207175004 + 207174984 207175024 41 TGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGAG TGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGCG < 41bp 1 0.251554746123326 1 0.0734545886516571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207175004 chr2:207175023 nonsynonymous SNV 0.097 0 40 hm5C_associated_SNPs_4068 0 0 0 0 0 Nucleus 1 0.500231643930147 1 0.999536712139705 hm5C_site_7121 DeepMRMD:1;iRNA_m5C:0.999536712139705 7122 chr2 207630338 207630338 1 + C T rs3762567 207630343 + 207630323 207630363 41 TCTCGGGGAAGCTGTCATGGCTGCTCCTGTACGTAGTCACG TCTCGGGGAAGCTGTTATGGCTGCTCCTGTACGTAGTCACG < 41bp 1 0.422647396146504 1 0.0533406734466553 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FASTKD2 ENSG00000118246 UTR5 Human protein_coding chr2:207630343 chr2:207630338 . . 0 16 hm5C_associated_SNPs_4069 1 0 1 0 1 Nucleus 1 0.500231643549319 1 0.999536712901361 hm5C_site_7122 DeepMRMD:1;iRNA_m5C:0.999536712901361 Cytochrome-c oxidase deficiency Cytochrome-c oxidase deficiency 7123 chr2 207630359 207630359 1 + T C rs546021759 207630343 + 207630323 207630363 41 TCTCGGGGAAGCTGTCATGGCTGCTCCTGTACGTAGTCACG TCTCGGGGAAGCTGTCATGGCTGCTCCTGTACGTAGCCACG < 41bp 1 0.443642211664875 1 0.0444039702415466 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FASTKD2 ENSG00000118246 UTR5 Human protein_coding chr2:207630343 chr2:207630359 . . 0 37 hm5C_associated_SNPs_4070 0 0 1 0 1 Nucleus 1 0.500231643946818 1 0.999536712106364 hm5C_site_7123 DeepMRMD:1;iRNA_m5C:0.999536712106364 7124 chr2 207630360 207630360 1 + C T rs16838842 207630343 + 207630323 207630363 41 TCTCGGGGAAGCTGTCATGGCTGCTCCTGTACGTAGTCACG TCTCGGGGAAGCTGTCATGGCTGCTCCTGTACGTAGTTACG < 41bp 1 0.36595539285353 1 0.045082688331604 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FASTKD2 ENSG00000118246 UTR5 Human protein_coding chr2:207630343 chr2:207630360 . . 0 38 hm5C_associated_SNPs_4071 2 0 1 0 1 Nucleus 1 0.500231645179308 1 0.999536709641383 hm5C_site_7124 DeepMRMD:1;iRNA_m5C:0.999536709641383 not specified not specified 7125 chr2 209218837 209218837 1 + G A rs146239645 209218844 + 209218824 209218864 41 ATTATTCTTTGCTGGTTGGGCGAGATGATACTAGCAATGAG ATTATTCTTTGCTAGTTGGGCGAGATGATACTAGCAATGAG < 41bp 1 0.527433622167272 1 0.559588432312012 experiment 0.945132755665457 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209218844 chr2:209218837 synonymous SNV . 0 14 hm5C_associated_SNPs_4073 0 0 1 0 1 Nucleus 1 0.500231643295494 0.880823135375976 0.999536713409011 hm5C_site_7125 DeepMRMD:0.880823135375976;iRNA_m5C:0.999536713409011 7126 chr2 211456637 211456637 1 + A G rs1047883 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGCCTTGGACAACGCCCTCCCTGCTGGCTGGAA < 41bp 1 0.262827301564102 1 0.080890417098999 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456637 nonsynonymous SNV 0.417 1 22 hm5C_associated_SNPs_4074 2 0 1 0 2 Nucleus 1 0.500231643901585 1 0.999536712196831 hm5C_site_7126 DeepMRMD:1;iRNA_m5C:0.999536712196831 not specified not specified 7127 chr2 211456637 211456637 1 + A G rs1047883 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGCCTTGGACAACGCCCTCCCTGCTGGCTGGAAAC < 41bp 1 0.0456061948919894 1 0.0693839490413666 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456637 nonsynonymous SNV 0.417 1 20 hm5C_associated_SNPs_4075 2 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7127 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 7128 chr2 211456639 211456639 1 + C T rs2229589 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGCCTTGGACAACACTCTCCCTGCTGGCTGGAA < 41bp 1 0.106238517788067 1 0.0719398856163025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456639 synonymous SNV . 0 24 hm5C_associated_SNPs_4076 2 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7128 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 7129 chr2 211456639 211456639 1 + C T rs2229589 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGCCTTGGACAACACTCTCCCTGCTGGCTGGAAAC < 41bp 1 0.138701200637729 1 0.168387651443481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456639 synonymous SNV . 0 22 hm5C_associated_SNPs_4077 2 0 1 0 2 Nucleus 1 0.500231643920898 1 0.999536712158203 hm5C_site_7129 DeepMRMD:1;iRNA_m5C:0.999536712158203 not specified not specified 7130 chr2 211456646 211456646 1 + G T rs148584272 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGCCTTGGACAACACCCTCCCTTCTGGCTGGAA < 41bp 1 0.205094675355996 1 0.0900475084781647 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456646 nonsynonymous SNV 0.995 2 31 hm5C_associated_SNPs_4078 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7130 DeepMRMD:1;iRNA_m5C:0.999536712157815 7131 chr2 211456646 211456646 1 + G T rs148584272 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGCCTTGGACAACACCCTCCCTTCTGGCTGGAAAC < 41bp 1 0.0465409411737591 1 0.118741124868393 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456646 nonsynonymous SNV 0.995 2 29 hm5C_associated_SNPs_4079 0 0 0 0 2 Nucleus 1 0.500231643921021 1 0.999536712157959 hm5C_site_7131 DeepMRMD:1;iRNA_m5C:0.999536712157959 7132 chr2 211465359 211465359 1 + A T rs144230667 211465360 + 211465340 211465380 41 AGTTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT AGTTGAGTCCATTATGGCTTCGGAAGACAGGCAGCTGTTTT < 41bp 1 0.591203858231382 1 0.830919444561005 experiment 0.817592283537235 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPS1 ENSG00000021826 CDS Human protein_coding chr2:211465360 chr2:211465359 nonsynonymous SNV 0.996 2 20 hm5C_associated_SNPs_4080 0 0 1 0 2 Nucleus 1 0.500231643921101 0.33816111087799 0.999536712157799 hm5C_site_7132 DeepMRMD:0.33816111087799;iRNA_m5C:0.999536712157799 7133 chr2 217012901 217012901 1 + A G rs207906 217012900 + 217012880 217012920 41 TCCTCCCGCTGAGGTGACAACAAAAAGTCAGATTCCTCTCT TCCTCCCGCTGAGGTGACAACGAAAAGTCAGATTCCTCTCT < 41bp 1 0.672949677569359 1 0.280017793178558 experiment 0.654100644861282 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRCC5 ENSG00000079246 CDS Human protein_coding chr2:217012900 chr2:217012901 synonymous SNV . 0 22 hm5C_associated_SNPs_4082 0 0 1 0 1 Nucleus 1 0.500231637273255 1 0.999536725453491 hm5C_site_7133 DeepMRMD:1;iRNA_m5C:0.999536725453491 7134 chr2 217277267 217277267 1 + G A rs79352134 217277270 + 217277250 217277290 41 AGCGCTTGAATACCCGTGGCCTAACCGTCCACTCGGAAGAC AGCGCTTGAATACCCGTAGCCTAACCGTCCACTCGGAAGAC < 41bp 1 0.19029326127645 1 0.0449472069740295 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMARCAL1 ENSG00000235042 ncRNA_exonic Human antisense chr2:217277270 chr2:217277267 . . 0 18 hm5C_associated_SNPs_4083 1 0 1 0 0 chromatin 1 0.500231643921085 1 0.99953671215783 hm5C_site_7134 DeepMRMD:1;iRNA_m5C:0.99953671215783 Schimke immunoosseous dysplasia Schimke immunoosseous dysplasia 7135 chr2 217277267 217277267 1 + G A rs79352134 217277274 + 217277254 217277294 41 CTTGAATACCCGTGGCCTAACCGTCCACTCGGAAGACCGGT CTTGAATACCCGTAGCCTAACCGTCCACTCGGAAGACCGGT < 41bp 1 0.0915205551294675 1 0.282492578029633 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCAL1 ENSG00000235042 ncRNA_exonic Human antisense chr2:217277274 chr2:217277267 . . 0 14 hm5C_associated_SNPs_4084 1 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157817 hm5C_site_7135 DeepMRMD:1;iRNA_m5C:0.999536712157817 Schimke immunoosseous dysplasia Schimke immunoosseous dysplasia 7136 chr2 217363567 217363567 1 + C G rs200229085 217363561 + 217363541 217363581 41 ACCGCGCCTGCGCACCGCGTCTCTTCCTTTCTGGGCTCGGA ACCGCGCCTGCGCACCGCGTCTCTTCGTTTCTGGGCTCGGA < 41bp 1 0.324277790991138 1 0.0451550781726837 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL37A ENSG00000197756 UTR5 Human protein_coding chr2:217363561 chr2:217363567 . . 0 27 hm5C_associated_SNPs_4085 0 0 1 0 1 Cytosol 1 0.500231643921199 1 0.999536712157601 hm5C_site_7136 DeepMRMD:1;iRNA_m5C:0.999536712157601 7137 chr2 217363567 217363567 1 + C G rs200229085 217363563 + 217363543 217363583 41 CGCGCCTGCGCACCGCGTCTCTTCCTTTCTGGGCTCGGACC CGCGCCTGCGCACCGCGTCTCTTCGTTTCTGGGCTCGGACC < 41bp 1 0.59177643028682 1 0.122486263513565 experiment 0.81644713942636 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL37A ENSG00000197756 UTR5 Human protein_coding chr2:217363563 chr2:217363567 . . 0 25 hm5C_associated_SNPs_4086 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7137 DeepMRMD:1;iRNA_m5C:0.999536712157815 7138 chr2 217364764 217364764 1 + G T rs2272243 217364748 + 217364728 217364768 41 AGTGGCTGGCGGTGCCTGGACGTACAAGTGAGTCTAGTTCC AGTGGCTGGCGGTGCCTGGACGTACAAGTGAGTCTATTTCC < 41bp 1 0.351880644705342 1 0.315347671508789 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 intronic Human protein_coding chr2:217364748 chr2:217364764 . . 0 37 hm5C_associated_SNPs_4087 0 0 1 0 1 Cytosol 1 0.500231644270139 1 0.999536711459722 hm5C_site_7138 DeepMRMD:1;iRNA_m5C:0.999536711459722 7139 chr2 217528656 217528656 1 + T C rs9341219 217528655 + 217528635 217528675 41 CCTCCATGCTCTTCTCCTCTCTCCCCAGTGCAAGATGTCTC CCTCCATGCTCTTCTCCTCTCCCCCCAGTGCAAGATGTCTC < 41bp 1 0.170481283202473 1 0.137648671865463 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGFBP2 ENSG00000115457 intronic Human protein_coding chr2:217528655 chr2:217528656 . . 0 22 hm5C_associated_SNPs_4088 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643918919 1 0.999536712162162 hm5C_site_7139 DeepMRMD:1;iRNA_m5C:0.999536712162162 7140 chr2 217528871 217528871 1 + T C rs9341220 217528872 + 217528852 217528892 41 CCCCTGCCCCCCGCCCCTCTCCAAACACCGGCAGAAAACGG CCCCTGCCCCCCGCCCCTCCCCAAACACCGGCAGAAAACGG < 41bp 1 0.343247669566004 1 0.24238845705986 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IGFBP2 ENSG00000115457 UTR3 Human protein_coding chr2:217528872 chr2:217528871 . . 0 20 hm5C_associated_SNPs_4089 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921047 1 0.999536712157905 hm5C_site_7140 DeepMRMD:1;iRNA_m5C:0.999536712157905 7141 chr2 217528871 217528871 1 + T C rs9341220 217528873 + 217528853 217528893 41 CCCTGCCCCCCGCCCCTCTCCAAACACCGGCAGAAAACGGA CCCTGCCCCCCGCCCCTCCCCAAACACCGGCAGAAAACGGA < 41bp 1 0.214863290305003 1 0.238942861557007 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IGFBP2 ENSG00000115457 UTR3 Human protein_coding chr2:217528873 chr2:217528871 . . 0 19 hm5C_associated_SNPs_4090 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_7141 DeepMRMD:1;iRNA_m5C:0.999536712157815 7142 chr2 219210696 219210696 1 + C G rs115429065 219210713 + 219210693 219210733 41 GGCCCTTTGCAGTTTGCCAGCCATATTCCCATGTGATTTCC GGCGCTTTGCAGTTTGCCAGCCATATTCCCATGTGATTTCC < 41bp 1 0.165388280688098 1 0.0440897047519684 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CATIP-AS2 ENSG00000237281 ncRNA_intronic Human antisense chr2:219210713 chr2:219210696 . . 0 4 hm5C_associated_SNPs_4091 1 0 0 0 0 unknown 1 0.500231645192365 1 0.999536709615269 hm5C_site_7142 DeepMRMD:1;iRNA_m5C:0.999536709615269 Paroxysmal choreoathetosis Paroxysmal choreoathetosis 7143 chr2 219269089 219269089 1 + C G rs199987970 219269106 + 219269086 219269126 41 GAGCAACTCAGCCGTGTGGACGACGTGTACTCAGTGCTCAG GAGGAACTCAGCCGTGTGGACGACGTGTACTCAGTGCTCAG < 41bp 1 0.6044703322109 1 0.161958575248718 experiment 0.7910593355782 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219269106 chr2:219269089 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_4092 0 0 1 0 1 Cytosol 1 0.500231643921078 1 0.999536712157845 hm5C_site_7143 DeepMRMD:1;iRNA_m5C:0.999536712157845 7144 chr2 219270186 219270186 1 + T G rs199834461 219270171 + 219270151 219270191 41 CCCAGCATATGCTAGGCCCACCAGCTAAGTGTGTGTGGGGG CCCAGCATATGCTAGGCCCACCAGCTAAGTGTGTGGGGGGG < 41bp 1 0.198098480249064 1 0.58690619468689 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTDSP1 ENSG00000144579 UTR3 Human protein_coding chr2:219270171 chr2:219270186 . . 0 36 hm5C_associated_SNPs_4093 0 0 1 0 0 Cytosol 1 0.500231643921092 0.82618761062622 0.999536712157815 hm5C_site_7144 DeepMRMD:0.82618761062622;iRNA_m5C:0.999536712157815 7145 chr2 219452034 219452034 1 + C T rs181874537 219452044 + 219452024 219452064 41 TTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGATCT TTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGATCT < 41bp 1 0.290944563361927 1 0.260624259710312 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452044 chr2:219452034 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_4095 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7145 DeepMRMD:1;iRNA_m5C:0.999536712157815 7146 chr2 219452034 219452034 1 + C T rs181874537 219452045 + 219452025 219452065 41 TAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGATCTT TAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGATCTT < 41bp 1 0.538127198314524 1 0.646247625350952 experiment 0.923745603370953 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452045 chr2:219452034 nonsynonymous SNV 0.001 0 10 hm5C_associated_SNPs_4096 0 0 0 0 2 Cytosol 1 0.500231643902596 0.707504749298096 0.999536712194808 hm5C_site_7146 DeepMRMD:0.707504749298096;iRNA_m5C:0.999536712194808 7147 chr2 219452034 219452034 1 + C T rs181874537 219452053 + 219452033 219452073 41 ACGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCC ATGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCC < 41bp 1 0.452838833868941 1 0.268670380115509 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452053 chr2:219452034 nonsynonymous SNV 0.001 0 2 hm5C_associated_SNPs_4097 0 0 0 0 2 Cytosol 1 0.500231643923401 1 0.999536712153198 hm5C_site_7147 DeepMRMD:1;iRNA_m5C:0.999536712153198 7148 chr2 219452034 219452034 1 + C T rs181874537 219452054 + 219452034 219452074 41 CGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCCG TGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCCG < 41bp 1 0.40147603465856 1 0.122684866189957 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNOT9 ENSG00000144580 CDS Human protein_coding chr2:219452054 chr2:219452034 nonsynonymous SNV 0.001 0 1 hm5C_associated_SNPs_4098 0 0 0 0 2 Cytosol 1 0.500231628292537 1 0.999536743414926 hm5C_site_7148 DeepMRMD:1;iRNA_m5C:0.999536743414926 7149 chr2 219677673 219677673 1 + G A rs190012697 219677655 + 219677635 219677675 41 TTGCTTTCACAGGGAAGAAGCTGATTGATGAGAAGCTCGAA TTGCTTTCACAGGGAAGAAGCTGATTGATGAGAAGCTCAAA < 41bp 1 0.267359437553986 1 0.141534835100174 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677655 chr2:219677673 nonsynonymous SNV 0.043 0 39 hm5C_associated_SNPs_4100 1 0 1 0 1 cytosol 1 0.50023164392112 1 0.99953671215776 hm5C_site_7149 DeepMRMD:1;iRNA_m5C:0.99953671215776 Cholestanol storage disease Cholestanol storage disease 7150 chr2 220110247 220110247 1 + C T rs576176118 220110237 + 220110217 220110257 41 GGTGGCGCTTCTCTCTGGCCCGAGCCAGGTCAGTCCGGCAG GGTGGCGCTTCTCTCTGGCCCGAGCCAGGTTAGTCCGGCAG < 41bp 1 0.650122017527676 1 0.389924883842468 experiment 0.699755964944648 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STK16 ENSG00000115661 UTR5 Human protein_coding chr2:220110237 chr2:220110247 . . 0 31 hm5C_associated_SNPs_4102 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7150 DeepMRMD:1;iRNA_m5C:0.999536712157815 7151 chr2 220110247 220110247 1 + C T rs576176118 220110241 + 220110221 220110261 41 GCGCTTCTCTCTGGCCCGAGCCAGGTCAGTCCGGCAGTGCA GCGCTTCTCTCTGGCCCGAGCCAGGTTAGTCCGGCAGTGCA < 41bp 1 0.618784057830212 1 0.771985411643982 experiment 0.762431884339576 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STK16 ENSG00000115661 UTR5 Human protein_coding chr2:220110241 chr2:220110247 . . 0 27 hm5C_associated_SNPs_4103 0 0 1 0 0 Ribosome 1 0.500231643921093 0.456029176712036 0.999536712157813 hm5C_site_7151 DeepMRMD:0.456029176712036;iRNA_m5C:0.999536712157813 7152 chr2 220110255 220110255 1 + C G rs3755052 220110237 + 220110217 220110257 41 GGTGGCGCTTCTCTCTGGCCCGAGCCAGGTCAGTCCGGCAG GGTGGCGCTTCTCTCTGGCCCGAGCCAGGTCAGTCCGGGAG < 41bp 1 0.669945700090289 1 0.479234218597412 experiment 0.660108599819422 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STK16 ENSG00000115661 UTR5 Human protein_coding chr2:220110237 chr2:220110255 . . 0 39 hm5C_associated_SNPs_4104 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7152 DeepMRMD:1;iRNA_m5C:0.999536712157815 7153 chr2 220110255 220110255 1 + C G rs3755052 220110241 + 220110221 220110261 41 GCGCTTCTCTCTGGCCCGAGCCAGGTCAGTCCGGCAGTGCA GCGCTTCTCTCTGGCCCGAGCCAGGTCAGTCCGGGAGTGCA < 41bp 1 0.516557920703017 1 0.5899817943573 experiment 0.966884158593967 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STK16 ENSG00000115661 UTR5 Human protein_coding chr2:220110241 chr2:220110255 . . 0 35 hm5C_associated_SNPs_4105 0 0 1 0 0 Ribosome 1 0.50023164390581 0.8200364112854 0.999536712188381 hm5C_site_7153 DeepMRMD:0.8200364112854;iRNA_m5C:0.999536712188381 7154 chr2 220110258 220110258 1 + T C rs113112404 220110241 + 220110221 220110261 41 GCGCTTCTCTCTGGCCCGAGCCAGGTCAGTCCGGCAGTGCA GCGCTTCTCTCTGGCCCGAGCCAGGTCAGTCCGGCAGCGCA < 41bp 1 0.601524503017967 1 0.788633584976196 experiment 0.796950993964066 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STK16 ENSG00000115661 UTR5 Human protein_coding chr2:220110241 chr2:220110258 . . 0 38 hm5C_associated_SNPs_4106 0 0 1 0 0 Ribosome 1 0.500231643696901 0.422732830047608 0.999536712606198 hm5C_site_7154 DeepMRMD:0.422732830047608;iRNA_m5C:0.999536712606198 7155 chr2 220110395 220110395 1 + C T rs563637526 220110391 + 220110371 220110411 41 GATGGGCGTGGGAGCGGGGGCTGCCCAAAGATGGGCTGGGG GATGGGCGTGGGAGCGGGGGCTGCTCAAAGATGGGCTGGGG < 41bp 1 0.55736225446487 1 0.340701997280121 experiment 0.885275491070259 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STK16 ENSG00000115661 UTR5 Human protein_coding chr2:220110391 chr2:220110395 . . 0 25 hm5C_associated_SNPs_4107 0 0 1 0 0 Ribosome 1 0.500231643939046 1 0.999536712121909 hm5C_site_7155 DeepMRMD:1;iRNA_m5C:0.999536712121909 7156 chr2 220114069 220114069 1 + T A rs75923512 220114084 + 220114064 220114104 41 CCTGATCGTTCAAGCTCATACATGGTTAATGATTAATGAGG CCTGAACGTTCAAGCTCATACATGGTTAATGATTAATGAGG < 41bp 1 0.642748636805288 1 0.0684298872947693 experiment 0.714502726389424 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STK16 ENSG00000115661 UTR3 Human protein_coding chr2:220114084 chr2:220114069 . . 0 6 hm5C_associated_SNPs_4108 0 0 0 0 0 Ribosome 1 0.500231643921209 1 0.999536712157582 hm5C_site_7156 DeepMRMD:1;iRNA_m5C:0.999536712157582 7157 chr2 220114070 220114070 1 + C A rs114934283 220114084 + 220114064 220114104 41 CCTGATCGTTCAAGCTCATACATGGTTAATGATTAATGAGG CCTGATAGTTCAAGCTCATACATGGTTAATGATTAATGAGG < 41bp 1 0.669843460584468 1 0.120864897966385 experiment 0.660313078831065 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STK16 ENSG00000115661 UTR3 Human protein_coding chr2:220114084 chr2:220114070 . . 0 7 hm5C_associated_SNPs_4109 0 0 0 0 0 Ribosome 1 0.500231644636033 1 0.999536710727933 hm5C_site_7157 DeepMRMD:1;iRNA_m5C:0.999536710727933 7158 chr2 220114071 220114071 1 + G T rs558833993 220114084 + 220114064 220114104 41 CCTGATCGTTCAAGCTCATACATGGTTAATGATTAATGAGG CCTGATCTTTCAAGCTCATACATGGTTAATGATTAATGAGG < 41bp 1 0.57770280316305 1 0.106011182069778 experiment 0.844594393673899 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STK16 ENSG00000115661 UTR3 Human protein_coding chr2:220114084 chr2:220114071 . . 0 8 hm5C_associated_SNPs_4110 0 0 1 0 0 Ribosome 1 0.500231644633368 1 0.999536710733264 hm5C_site_7158 DeepMRMD:1;iRNA_m5C:0.999536710733264 7159 chr2 220346378 220346378 1 + G A rs190001816 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACCTACCGCAGAAGAAACCCTAG < 41bp 1 0.0259507619591186 1 0.11843404173851 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346378 synonymous SNV . 0 34 hm5C_associated_SNPs_4111 0 0 0 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_7159 DeepMRMD:1;iRNA_m5C:0.999536712157814 7160 chr2 220349355 220349355 1 + C T rs73087217 220349341 + 220349321 220349361 41 GGACCCCGCTGGAGCTGGTGCGACGGCCTGAGCGCTCACGC GGACCCCGCTGGAGCTGGTGCGACGGCCTGAGCGTTCACGC < 41bp 1 0.435857718864194 1 0.349311292171478 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220349341 chr2:220349355 synonymous SNV . 0 35 hm5C_associated_SNPs_4112 0 0 0 0 0 Nucleus 1 0.500231643921127 1 0.999536712157746 hm5C_site_7160 DeepMRMD:1;iRNA_m5C:0.999536712157746 7161 chr2 220355623 220355623 1 + C T rs200044898 220355629 + 220355609 220355649 41 AGTGCCCAGCCCTACAACCCCCAGGCCCTTAGGCCCCTTGG AGTGCCCAGCCCTATAACCCCCAGGCCCTTAGGCCCCTTGG < 41bp 1 0.175194527504928 1 0.670332372188568 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355629 chr2:220355623 synonymous SNV . 0 15 hm5C_associated_SNPs_4113 0 0 0 0 1 Nucleus 1 0.500231643921092 0.659335255622864 0.999536712157815 hm5C_site_7161 DeepMRMD:0.659335255622864;iRNA_m5C:0.999536712157815 7162 chr2 220355623 220355623 1 + C T rs200044898 220355636 + 220355616 220355656 41 AGCCCTACAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGC AGCCCTATAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGC < 41bp 1 0.115403070605739 1 0.0661021769046783 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355636 chr2:220355623 synonymous SNV . 0 8 hm5C_associated_SNPs_4114 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7162 DeepMRMD:1;iRNA_m5C:0.999536712157815 7163 chr2 220355623 220355623 1 + C T rs200044898 220355643 + 220355623 220355663 41 CAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGCACGGGCA TAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGCACGGGCA < 41bp 1 0.022110327608996 1 0.0495802462100983 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355643 chr2:220355623 synonymous SNV . 0 1 hm5C_associated_SNPs_4115 0 0 0 0 1 Nucleus 1 0.500231512972854 1 0.999536974054292 hm5C_site_7163 DeepMRMD:1;iRNA_m5C:0.999536974054292 7164 chr2 220502415 220502415 1 + C G rs145432587 220502432 + 220502412 220502452 41 GCCCCCCCAGCCCGAGGAACCAGCCCAATACGGCACTGCTC GCCGCCCCAGCCCGAGGAACCAGCCCAATACGGCACTGCTC < 41bp 1 0.407798875428991 1 0.740054368972778 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220502432 chr2:220502415 nonsynonymous SNV 0.118 0 4 hm5C_associated_SNPs_4116 0 0 0 0 0 Cytosol 1 0.500231643934559 0.519891262054444 0.999536712130883 hm5C_site_7164 DeepMRMD:0.519891262054444;iRNA_m5C:0.999536712130883 7165 chr2 220502425 220502425 1 + G A rs61753431 220502432 + 220502412 220502452 41 GCCCCCCCAGCCCGAGGAACCAGCCCAATACGGCACTGCTC GCCCCCCCAGCCCAAGGAACCAGCCCAATACGGCACTGCTC < 41bp 1 0.334006742363852 1 0.647524058818817 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220502432 chr2:220502425 synonymous SNV . 0 14 hm5C_associated_SNPs_4117 0 0 0 0 0 Cytosol 1 0.500231645365819 0.704951882362366 0.999536709268362 hm5C_site_7165 DeepMRMD:0.704951882362366;iRNA_m5C:0.999536709268362 7166 chr2 220505237 220505237 1 + C T rs138115643 220505231 + 220505211 220505251 41 ATCTTCCTGTACATGGGGGTCACGTCCCTGTCTGGTATCCA ATCTTCCTGTACATGGGGGTCACGTCTCTGTCTGGTATCCA < 41bp 1 0.316056986111683 1 0.0352777540683746 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505231 chr2:220505237 synonymous SNV . 0 27 hm5C_associated_SNPs_4118 0 0 0 0 2 Cytosol 1 0.500231643914701 1 0.999536712170598 hm5C_site_7166 DeepMRMD:1;iRNA_m5C:0.999536712170598 7167 chr2 220505265 220505265 1 + T C rs684428 220505284 + 220505264 220505304 41 TTTGTTGCTCATCCTCATGCCGGCAAAACACCATCCTGAGC TCTGTTGCTCATCCTCATGCCGGCAAAACACCATCCTGAGC < 41bp 1 0.693373352208376 1 0.458232223987579 experiment 0.613253295583248 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505284 chr2:220505265 synonymous SNV . 0 2 hm5C_associated_SNPs_4119 0 0 0 0 1 Cytosol 1 0.500231654610586 1 0.999536690778829 hm5C_site_7167 DeepMRMD:1;iRNA_m5C:0.999536690778829 7168 chr2 220505285 220505285 1 + G A rs181107871 220505284 + 220505264 220505304 41 TTTGTTGCTCATCCTCATGCCGGCAAAACACCATCCTGAGC TTTGTTGCTCATCCTCATGCCAGCAAAACACCATCCTGAGC < 41bp 1 0.631316497759878 1 0.230642229318619 experiment 0.737367004480243 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505284 chr2:220505285 synonymous SNV . 0 22 hm5C_associated_SNPs_4120 0 0 0 0 1 Cytosol 1 0.500231643193702 1 0.999536713612597 hm5C_site_7168 DeepMRMD:1;iRNA_m5C:0.999536713612597 7169 chr2 224824695 224824695 1 + T C rs35331337 224824686 + 224824666 224824706 41 ATTGGAGCCCTGTTACAGAGCAGTGGACCTGAGAGGACTGC ATTGGAGCCCTGTTACAGAGCAGTGGACCCGAGAGGACTGC < 41bp 1 0.566039832229592 1 0.382338881492615 experiment 0.867920335540816 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824686 chr2:224824695 synonymous SNV . 0 30 hm5C_associated_SNPs_4121 1 0 1 0 0 Ribosome 1 0.50023165473851 1 0.999536690522981 hm5C_site_7169 DeepMRMD:1;iRNA_m5C:0.999536690522981 not specified not specified 7170 chr2 224832196 224832196 1 + C T rs571033902 224832208 + 224832188 224832228 41 GATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGG GATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.623056121084453 1 0.401665806770325 experiment 0.753887757831094 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MRPL44 ENSG00000228802 ncRNA_intronic Human antisense chr2:224832208 chr2:224832196 . . 0 9 hm5C_associated_SNPs_4122 0 0 0 0 0 Ribosome 1 0.500231643923124 1 0.999536712153752 hm5C_site_7170 DeepMRMD:1;iRNA_m5C:0.999536712153752 7171 chr2 227704146 227704146 1 + T A rs957630 227704165 + 227704145 227704185 41 TTACCTGTAAAACTCAGGAGCCGAGAAGCTTTAAGAACAGT TAACCTGTAAAACTCAGGAGCCGAGAAGCTTTAAGAACAGT < 41bp 1 0.117794035932293 1 0.357975423336029 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RHBDD1 ENSG00000144468 UTR5 Human protein_coding chr2:227704165 chr2:227704146 . . 0 2 hm5C_associated_SNPs_4124 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164915844 1 0.999536701683121 hm5C_site_7171 DeepMRMD:1;iRNA_m5C:0.999536701683121 7172 chr2 227860957 227860957 1 + C T rs541091091 227860938 + 227860918 227860958 41 TGTAGGTTCCCAGCCCCTTCCCAGTGGCAGCTTGTGTGTCC TGTAGGTTCCCAGCCCCTTCCCAGTGGCAGCTTGTGTGTTC < 41bp 1 0.485350254164125 1 0.315010040998459 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHBDD1 ENSG00000144468 UTR3 Human protein_coding chr2:227860938 chr2:227860957 . . 0 40 hm5C_associated_SNPs_4125 0 0 0 0 0 Endoplasmic reticulum 1 0.5002316439211 1 0.9995367121578 hm5C_site_7172 DeepMRMD:1;iRNA_m5C:0.9995367121578 7173 chr2 228148541 228148541 1 + C T rs75519005 228148543 + 228148523 228148563 41 CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAG CATTGGCCCTCCAGGGCCTCCTGGGAACCCAGGCACACCAG < 41bp 1 0.640236684285319 1 0.630598127841949 experiment 0.719526631429363 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148543 chr2:228148541 synonymous SNV . 0 19 hm5C_associated_SNPs_4126 2 0 0 0 2 nucleus 1 0.500231643921092 0.738803744316102 0.999536712157815 hm5C_site_7173 DeepMRMD:0.738803744316102;iRNA_m5C:0.999536712157815 not specified not specified 7174 chr2 228162537 228162537 1 + C A rs528758931 228162527 + 228162507 228162547 41 GTCTGCCCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT GTCTGCCCGGTGCAATTATCCCTGGCCAGAAAGGAAATCGT < 41bp 1 0.160264551354384 1 0.168989151716232 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228162527 chr2:228162537 nonsynonymous SNV 0.560 1 31 hm5C_associated_SNPs_4127 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7174 DeepMRMD:1;iRNA_m5C:0.999536712157815 7175 chr2 228190065 228190065 1 + A G rs7588961 228190066 + 228190046 228190086 41 TCCGTGCTCTCAGCCAACCACCTCTGAGAGCGCCCACTCGA TCCGTGCTCTCAGCCAACCGCCTCTGAGAGCGCCCACTCGA < 41bp 1 0.404556362882206 1 0.0491840243339539 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFF ENSG00000168958 UTR5 Human protein_coding chr2:228190066 chr2:228190065 . . 0 20 hm5C_associated_SNPs_4128 0 0 1 0 1 Cytosol 1 0.500231646367245 1 0.999536707265509 hm5C_site_7175 DeepMRMD:1;iRNA_m5C:0.999536707265509 7176 chr2 228190065 228190065 1 + A G rs7588961 228190067 + 228190047 228190087 41 CCGTGCTCTCAGCCAACCACCTCTGAGAGCGCCCACTCGAG CCGTGCTCTCAGCCAACCGCCTCTGAGAGCGCCCACTCGAG < 41bp 1 0.612515354152952 1 0.158970564603806 experiment 0.774969291694097 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFF ENSG00000168958 UTR5 Human protein_coding chr2:228190067 chr2:228190065 . . 0 19 hm5C_associated_SNPs_4129 0 0 1 0 1 Cytosol 1 0.500231643772475 1 0.999536712455049 hm5C_site_7176 DeepMRMD:1;iRNA_m5C:0.999536712455049 7177 chr2 228398422 228398422 1 + A G rs13015491 228398425 + 228398405 228398445 41 GCTGGTTTACAGACTGCAGACAAATATGCAGCACTTGCTAA GCTGGTTTACAGACTGCGGACAAATATGCAGCACTTGCTAA < 41bp 1 0.340353464123316 1 0.11762672662735 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228398425 chr2:228398422 synonymous SNV . 0 18 hm5C_associated_SNPs_4130 0 0 1 0 1 Cytosol 1 0.500231774102928 1 0.999536451794144 hm5C_site_7177 DeepMRMD:1;iRNA_m5C:0.999536451794144 7178 chr2 228419614 228419614 1 + A T rs116326133 228419605 + 228419585 228419625 41 GATCAGCCACTTTTAAGGTGCTGTCATATATCTTGGAATGA GATCAGCCACTTTTAAGGTGCTGTCATATTTCTTGGAATGA < 41bp 1 0.0536788267099009 1 0.0680690109729767 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGFG1 ENSG00000173744 UTR3 Human protein_coding chr2:228419605 chr2:228419614 . . 0 30 hm5C_associated_SNPs_4131 0 0 1 0 0 Cytosol 1 0.500231643921086 1 0.999536712157827 hm5C_site_7178 DeepMRMD:1;iRNA_m5C:0.999536712157827 7179 chr2 231268119 231268119 1 + A G rs188846503 231268126 + 231268106 231268146 41 ACGGGGTTTCACTATGTTGGCCAGGCTGGTCTCGAACTCCT ACGGGGTTTCACTGTGTTGGCCAGGCTGGTCTCGAACTCCT < 41bp 1 0.669740421502503 1 0.618579030036926 experiment 0.660519156994995 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SP140L ENSG00000185404 UTR3 Human protein_coding chr2:231268126 chr2:231268119 . . 0 14 hm5C_associated_SNPs_4132 0 0 0 0 0 chromatin 1 0.500231643921092 0.762841939926148 0.999536712157815 hm5C_site_7179 DeepMRMD:0.762841939926148;iRNA_m5C:0.999536712157815 7180 chr2 231268119 231268119 1 + A G rs188846503 231268127 + 231268107 231268147 41 CGGGGTTTCACTATGTTGGCCAGGCTGGTCTCGAACTCCTG CGGGGTTTCACTGTGTTGGCCAGGCTGGTCTCGAACTCCTG < 41bp 1 0.62385872948095 1 0.414479225873947 experiment 0.752282541038099 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SP140L ENSG00000185404 UTR3 Human protein_coding chr2:231268127 chr2:231268119 . . 0 13 hm5C_associated_SNPs_4133 0 0 0 0 0 chromatin 1 0.50023252136174 1 0.99953495727652 hm5C_site_7180 DeepMRMD:1;iRNA_m5C:0.99953495727652 7181 chr2 231268119 231268119 1 + A G rs188846503 231268138 + 231268118 231268158 41 TATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGAGC TGTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGAGC < 41bp 1 0.555294711441201 1 0.725508391857147 experiment 0.889410577117599 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SP140L ENSG00000185404 UTR3 Human protein_coding chr2:231268138 chr2:231268119 . . 0 2 hm5C_associated_SNPs_4134 0 0 0 0 0 chromatin 1 0.500231648612254 0.548983216285706 0.999536702775492 hm5C_site_7181 DeepMRMD:0.548983216285706;iRNA_m5C:0.999536702775492 7182 chr2 231268160 231268160 1 + G A rs11692602 231268142 + 231268122 231268162 41 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGAGCCGCC TTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGAGCCACC < 41bp 1 0.612941084903895 1 0.0372134745121002 experiment 0.77411783019221 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SP140L ENSG00000185404 UTR3 Human protein_coding chr2:231268142 chr2:231268160 . . 0 39 hm5C_associated_SNPs_4135 0 0 0 0 0 chromatin 1 0.500231650330774 1 0.999536699338452 hm5C_site_7182 DeepMRMD:1;iRNA_m5C:0.999536699338452 7183 chr2 231268160 231268160 1 + G A rs11692602 231268144 + 231268124 231268164 41 GGCCAGGCTGGTCTCGAACTCCTGACCTCATGAGCCGCCCG GGCCAGGCTGGTCTCGAACTCCTGACCTCATGAGCCACCCG < 41bp 1 0.627215606625989 1 0.396200954914093 experiment 0.745568786748023 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SP140L ENSG00000185404 UTR3 Human protein_coding chr2:231268144 chr2:231268160 . . 0 37 hm5C_associated_SNPs_4136 0 0 0 0 0 chromatin 1 0.500231643681007 1 0.999536712637986 hm5C_site_7183 DeepMRMD:1;iRNA_m5C:0.999536712637986 7184 chr2 231268160 231268160 1 + G A rs11692602 231268145 + 231268125 231268165 41 GCCAGGCTGGTCTCGAACTCCTGACCTCATGAGCCGCCCGC GCCAGGCTGGTCTCGAACTCCTGACCTCATGAGCCACCCGC < 41bp 1 0.539175250216252 1 0.162432253360748 experiment 0.921649499567496 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SP140L ENSG00000185404 UTR3 Human protein_coding chr2:231268145 chr2:231268160 . . 0 36 hm5C_associated_SNPs_4137 0 0 0 0 0 chromatin 1 0.500231640705698 1 0.999536718588605 hm5C_site_7184 DeepMRMD:1;iRNA_m5C:0.999536718588605 7185 chr2 231268163 231268163 1 + C T rs11692527 231268144 + 231268124 231268164 41 GGCCAGGCTGGTCTCGAACTCCTGACCTCATGAGCCGCCCG GGCCAGGCTGGTCTCGAACTCCTGACCTCATGAGCCGCCTG < 41bp 1 0.635917693219655 1 0.436638504266739 experiment 0.728164613560691 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SP140L ENSG00000185404 UTR3 Human protein_coding chr2:231268144 chr2:231268163 . . 0 40 hm5C_associated_SNPs_4138 0 0 0 0 0 chromatin 1 0.500231642615305 1 0.999536714769391 hm5C_site_7185 DeepMRMD:1;iRNA_m5C:0.999536714769391 7186 chr2 231268163 231268163 1 + C T rs11692527 231268145 + 231268125 231268165 41 GCCAGGCTGGTCTCGAACTCCTGACCTCATGAGCCGCCCGC GCCAGGCTGGTCTCGAACTCCTGACCTCATGAGCCGCCTGC < 41bp 1 0.541515698519668 1 0.23411837220192 experiment 0.916968602960664 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SP140L ENSG00000185404 UTR3 Human protein_coding chr2:231268145 chr2:231268163 . . 0 39 hm5C_associated_SNPs_4139 0 0 0 0 0 chromatin 1 0.500231649194387 1 0.999536701611225 hm5C_site_7186 DeepMRMD:1;iRNA_m5C:0.999536701611225 7187 chr2 231326081 231326081 1 + T C rs35506327 231326090 + 231326070 231326110 41 CAAAAGTTGAGTGCCAAGCCCAAGCAAGAACTCATCATAAC CAAAAGTTGAGCGCCAAGCCCAAGCAAGAACTCATCATAAC < 41bp 1 0.369029619301528 1 0.502208292484283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SP100 ENSG00000067066 CDS Human protein_coding chr2:231326090 chr2:231326081 nonsynonymous SNV 0.000 0 12 hm5C_associated_SNPs_4140 0 0 0 0 1 Ribosome 1 0.500229505666998 0.995583415031434 0.999540988666005 hm5C_site_7187 DeepMRMD:0.995583415031434;iRNA_m5C:0.999540988666005 7188 chr2 231327220 231327220 1 + G A rs75519436 231327230 + 231327210 231327250 41 TCTCAGCACCGAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG TCTCAGCACCAAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG < 41bp 1 0.417242375729011 1 0.323936462402344 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SP100 ENSG00000067066 CDS Human protein_coding chr2:231327230 chr2:231327220 synonymous SNV . 0 11 hm5C_associated_SNPs_4141 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7188 DeepMRMD:1;iRNA_m5C:0.999536712157815 7189 chr2 231685434 231685434 1 + A G rs141969677 231685433 + 231685413 231685453 41 GTGCAGCGTGTCAGACACAACATTCATGTTACTCTTACATT GTGCAGCGTGTCAGACACAACGTTCATGTTACTCTTACATT < 41bp 1 0.29384300846984 1 0.157823175191879 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CAB39 ENSG00000135932 UTR3 Human protein_coding chr2:231685433 chr2:231685434 . . 0 22 hm5C_associated_SNPs_4142 0 0 1 0 0 Ribosome 1 0.500233469819536 1 0.999533060360929 hm5C_site_7189 DeepMRMD:1;iRNA_m5C:0.999533060360929 7190 chr2 231912001 231912001 1 + A G rs146241761 231912019 + 231911999 231912039 41 TGAGCCACTGAGACAGATGGCTGTCCGCTTTGAGGCTCTGC TGGGCCACTGAGACAGATGGCTGTCCGCTTTGAGGCTCTGC < 41bp 1 0.110648837272191 1 0.0405034720897675 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2orf72 ENSG00000204128 UTR3 Human protein_coding chr2:231912019 chr2:231912001 . . 0 3 hm5C_associated_SNPs_4143 0 0 1 1 0 Ribosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_7190 DeepMRMD:1;iRNA_m5C:0.999536712157806 7191 chr2 232236439 232236439 1 + A G rs58092703 232236423 + 232236403 232236443 41 GCCATCGCAGCCCCGCCAGCCGGGTCACTTTCTCCCAGGGC GCCATCGCAGCCCCGCCAGCCGGGTCACTTTCTCCCGGGGC < 41bp 1 0.662019468475495 1 0.928864479064941 experiment 0.67596106304901 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC9 ENSG00000263641;ENSG00000224376 intergenic Human other chr2:232236423 chr2:232236439 . . 0 37 hm5C_associated_SNPs_4145 0 0 0 0 0 membrane 1 0.500231643921092 0.142271041870118 0.999536712157815 hm5C_site_7191 DeepMRMD:0.142271041870118;iRNA_m5C:0.999536712157815 7192 chr2 233671277 233671277 1 + G A rs114498122 233671297 + 233671277 233671317 41 GTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA ATGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA < 41bp 1 0.203210254306637 1 0.211855113506317 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671297 chr2:233671277 synonymous SNV . 0 1 hm5C_associated_SNPs_4147 0 0 1 0 2 Nucleus 1 0.500231644301363 1 0.999536711397275 hm5C_site_7192 DeepMRMD:1;iRNA_m5C:0.999536711397275 7193 chr2 233671292 233671292 1 + C T rs114460769 233671297 + 233671277 233671317 41 GTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA GTGTGATGAAAGCTTTCAACCTCTTGGCGATATCATGAAAA < 41bp 1 0.225664464369257 1 0.165565520524979 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671297 chr2:233671292 synonymous SNV . 0 16 hm5C_associated_SNPs_4148 0 0 1 0 2 Nucleus 1 0.500231643782711 1 0.999536712434577 hm5C_site_7193 DeepMRMD:1;iRNA_m5C:0.999536712434577 7194 chr2 233704576 233704576 1 + G A rs149682624 233704582 + 233704562 233704602 41 CCTTCTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGC CCTTCTTCTTCAACATGGGGCCAGCAGTCCAATACAACAGC < 41bp 1 0.0536108142472717 1 0.169875681400299 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704582 chr2:233704576 synonymous SNV . 0 15 hm5C_associated_SNPs_4149 0 0 1 0 1 Nucleus 1 0.500231507116858 1 0.999536985766283 hm5C_site_7194 DeepMRMD:1;iRNA_m5C:0.999536985766283 7195 chr2 233704576 233704576 1 + G A rs149682624 233704586 + 233704566 233704606 41 CTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGCATGT CTTCTTCAACATGGGGCCAGCAGTCCAATACAACAGCATGT < 41bp 1 0.0930985173840776 1 0.646778225898743 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704586 chr2:233704576 synonymous SNV . 0 11 hm5C_associated_SNPs_4150 0 0 1 0 1 Nucleus 1 0.500231643921092 0.706443548202514 0.999536712157817 hm5C_site_7195 DeepMRMD:0.706443548202514;iRNA_m5C:0.999536712157817 7196 chr2 234378130 234378130 1 + C T rs375709979 234378117 + 234378097 234378137 41 CGAGGCCTAGCCTCTGTCCTCTCAGCCTGTGGCCTCCACAT CGAGGCCTAGCCTCTGTCCTCTCAGCCTGTGGCTTCCACAT < 41bp 1 0.626566951973517 1 0.164892762899399 experiment 0.746866096052965 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DGKD ENSG00000077044 UTR3 Human protein_coding chr2:234378117 chr2:234378130 . . 0 34 hm5C_associated_SNPs_4151 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7196 DeepMRMD:1;iRNA_m5C:0.999536712157815 7197 chr2 235951001 235951001 1 + G A rs114242502 235950995 + 235950975 235951015 41 TGCAGCTGTGGGGGAAGCACCAGTTCGTTTTGTCCAGGCCC TGCAGCTGTGGGGGAAGCACCAGTTCATTTTGTCCAGGCCC < 41bp 1 0.230715449712258 1 0.826419055461884 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235950995 chr2:235951001 nonsynonymous SNV 0.266 0 27 hm5C_associated_SNPs_4152 0 0 1 0 0 cytosol 1 0.500231643921092 0.347161889076232 0.999536712157815 hm5C_site_7197 DeepMRMD:0.347161889076232;iRNA_m5C:0.999536712157815 7198 chr2 236403462 236403462 1 + C T rs8178993 236403477 + 236403457 236403497 41 CAGAACCAGATCCGGGAGCACGTCATCGCCATCGAAGGTGA CAGAATCAGATCCGGGAGCACGTCATCGCCATCGAAGGTGA < 41bp 1 0.401429480365167 1 0.225171446800232 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236403477 chr2:236403462 synonymous SNV . 0 6 hm5C_associated_SNPs_4155 0 0 1 0 1 Nucleus 1 0.500231644181137 1 0.999536711637726 hm5C_site_7198 DeepMRMD:1;iRNA_m5C:0.999536711637726 7199 chr2 236817444 236817444 1 + A G rs145394669 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGTCCCGGGGAAGAGGCCACCCCGAGCCACGTCAGCCT < 41bp 1 0.137539967116522 1 0.0724477767944336 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817444 synonymous SNV . 0 10 hm5C_associated_SNPs_4156 0 0 1 0 1 Nucleus 1 0.500231645038245 1 0.999536709923511 hm5C_site_7199 DeepMRMD:1;iRNA_m5C:0.999536709923511 7200 chr2 236817468 236817468 1 + G A rs189935338 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACATCAGCCT < 41bp 1 0.0959886837631336 1 0.0438587665557861 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817468 synonymous SNV . 0 34 hm5C_associated_SNPs_4157 0 0 1 0 2 Nucleus 1 0.500231853639537 1 0.999536292720926 hm5C_site_7200 DeepMRMD:1;iRNA_m5C:0.999536292720926 7201 chr2 238005476 238005476 1 + C G rs34344319 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCAGGGGCCGTGGATGTTTCCTTTAACAA < 41bp 1 0.294277294305964 1 0.412275493144989 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005476 nonsynonymous SNV 0.745 0 22 hm5C_associated_SNPs_4158 0 0 1 0 2 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_7201 DeepMRMD:1;iRNA_m5C:0.999536712157808 7202 chr2 238600876 238600876 1 + C A rs147121136 238600871 + 238600851 238600891 41 CTTCCACCCCGAGCCCGACTCAGCCCGCGGCCACCTGCGCC CTTCCACCCCGAGCCCGACTCAGCCAGCGGCCACCTGCGCC < 41bp 1 0.681762293633402 1 0.503935039043427 experiment 0.636475412733195 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR5 Human protein_coding chr2:238600871 chr2:238600876 . . 0 26 hm5C_associated_SNPs_4159 0 0 1 0 0 Ribosome 1 0.500231643799871 0.992129921913146 0.999536712400258 hm5C_site_7202 DeepMRMD:0.992129921913146;iRNA_m5C:0.999536712400258 7203 chr2 238671536 238671536 1 + A G rs61744755 238671535 + 238671515 238671555 41 CAGGTTGAGTCAAATGAGGTCATGGGTGCACCAGATGACAG CAGGTTGAGTCAAATGAGGTCGTGGGTGCACCAGATGACAG < 41bp 1 0.435182109615299 1 0.552425682544708 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238671535 chr2:238671536 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_4160 0 0 1 0 0 Ribosome 1 0.500231648874975 0.895148634910584 0.999536702250049 hm5C_site_7203 DeepMRMD:0.895148634910584;iRNA_m5C:0.999536702250049 7204 chr2 238688303 238688303 1 + C T rs111776070 238688313 + 238688293 238688333 41 GCGAGCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCC GCGAGCTTGGTGCTTAGGGGCTCCCGTGCCATGGCTCACCC < 41bp 1 0.378474060143474 1 0.375460475683212 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688313 chr2:238688303 . . 0 11 hm5C_associated_SNPs_4161 0 0 1 0 0 Ribosome 1 0.500231644936726 1 0.999536710126549 hm5C_site_7204 DeepMRMD:1;iRNA_m5C:0.999536710126549 7205 chr2 238688303 238688303 1 + C T rs111776070 238688315 + 238688295 238688335 41 GAGCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCCCA GAGCTTGGTGCTTAGGGGCTCCCGTGCCATGGCTCACCCCA < 41bp 1 0.331017643468684 1 0.292919397354126 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688315 chr2:238688303 . . 0 9 hm5C_associated_SNPs_4162 0 0 1 0 0 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_7205 DeepMRMD:1;iRNA_m5C:0.999536712157808 7206 chr2 238688303 238688303 1 + C T rs111776070 238688316 + 238688296 238688336 41 AGCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCCCAG AGCTTGGTGCTTAGGGGCTCCCGTGCCATGGCTCACCCCAG < 41bp 1 0.224296995153501 1 0.695445835590363 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688316 chr2:238688303 . . 0 8 hm5C_associated_SNPs_4163 0 0 1 0 0 Ribosome 1 0.500231643921092 0.609108328819274 0.999536712157815 hm5C_site_7206 DeepMRMD:0.609108328819274;iRNA_m5C:0.999536712157815 7207 chr2 238688303 238688303 1 + C T rs111776070 238688317 + 238688297 238688337 41 GCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCCCAGG GCTTGGTGCTTAGGGGCTCCCGTGCCATGGCTCACCCCAGG < 41bp 1 0.514532667377915 1 0.789328694343567 experiment 0.97093466524417 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688317 chr2:238688303 . . 0 7 hm5C_associated_SNPs_4164 0 0 1 0 0 Ribosome 1 0.500231643921092 0.421342611312866 0.999536712157815 hm5C_site_7207 DeepMRMD:0.421342611312866;iRNA_m5C:0.999536712157815 7208 chr2 238688304 238688304 1 + G A rs138410523 238688313 + 238688293 238688333 41 GCGAGCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCC GCGAGCTTGGCACTTAGGGGCTCCCGTGCCATGGCTCACCC < 41bp 1 0.333076651946791 1 0.427640616893768 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688313 chr2:238688304 . . 0 12 hm5C_associated_SNPs_4165 0 0 1 0 0 Ribosome 1 0.500231644937268 1 0.999536710125464 hm5C_site_7208 DeepMRMD:1;iRNA_m5C:0.999536710125464 7209 chr2 238688304 238688304 1 + G A rs138410523 238688315 + 238688295 238688335 41 GAGCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCCCA GAGCTTGGCACTTAGGGGCTCCCGTGCCATGGCTCACCCCA < 41bp 1 0.299987015341919 1 0.291239619255066 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688315 chr2:238688304 . . 0 10 hm5C_associated_SNPs_4166 0 0 1 0 0 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_7209 DeepMRMD:1;iRNA_m5C:0.999536712157808 7210 chr2 238688304 238688304 1 + G A rs138410523 238688316 + 238688296 238688336 41 AGCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCCCAG AGCTTGGCACTTAGGGGCTCCCGTGCCATGGCTCACCCCAG < 41bp 1 0.1706646950102 1 0.463506460189819 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688316 chr2:238688304 . . 0 9 hm5C_associated_SNPs_4167 0 0 1 0 0 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_7210 DeepMRMD:1;iRNA_m5C:0.99953671215782 7211 chr2 238688304 238688304 1 + G A rs138410523 238688317 + 238688297 238688337 41 GCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCCCAGG GCTTGGCACTTAGGGGCTCCCGTGCCATGGCTCACCCCAGG < 41bp 1 0.500136858096598 1 0.757287383079529 experiment 0.999726283806804 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688317 chr2:238688304 . . 0 8 hm5C_associated_SNPs_4168 0 0 1 0 0 Ribosome 1 0.500231643921092 0.485425233840942 0.999536712157815 hm5C_site_7211 DeepMRMD:0.485425233840942;iRNA_m5C:0.999536712157815 7212 chr2 238688305 238688305 1 + C T rs2117364 238688313 + 238688293 238688333 41 GCGAGCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCC GCGAGCTTGGCGTTTAGGGGCTCCCGTGCCATGGCTCACCC < 41bp 1 0.373361783483838 1 0.26133131980896 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688313 chr2:238688305 . . 0 13 hm5C_associated_SNPs_4169 0 0 1 0 0 Ribosome 1 0.500231643921156 1 0.999536712157689 hm5C_site_7212 DeepMRMD:1;iRNA_m5C:0.999536712157689 7213 chr2 238688305 238688305 1 + C T rs2117364 238688315 + 238688295 238688335 41 GAGCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCCCA GAGCTTGGCGTTTAGGGGCTCCCGTGCCATGGCTCACCCCA < 41bp 1 0.321397987277596 1 0.336459398269653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688315 chr2:238688305 . . 0 11 hm5C_associated_SNPs_4170 0 0 1 0 0 Ribosome 1 0.50023164392022 1 0.99953671215956 hm5C_site_7213 DeepMRMD:1;iRNA_m5C:0.99953671215956 7214 chr2 238688305 238688305 1 + C T rs2117364 238688316 + 238688296 238688336 41 AGCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCCCAG AGCTTGGCGTTTAGGGGCTCCCGTGCCATGGCTCACCCCAG < 41bp 1 0.213866016085008 1 0.396739512681961 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688316 chr2:238688305 . . 0 10 hm5C_associated_SNPs_4171 0 0 1 0 0 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_7214 DeepMRMD:1;iRNA_m5C:0.99953671215782 7215 chr2 238688305 238688305 1 + C T rs2117364 238688317 + 238688297 238688337 41 GCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCCCAGG GCTTGGCGTTTAGGGGCTCCCGTGCCATGGCTCACCCCAGG < 41bp 1 0.535736433360783 1 0.63683009147644 experiment 0.928527133278435 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688317 chr2:238688305 . . 0 9 hm5C_associated_SNPs_4172 0 0 1 0 0 Ribosome 1 0.500231643921164 0.72633981704712 0.999536712157671 hm5C_site_7215 DeepMRMD:0.72633981704712;iRNA_m5C:0.999536712157671 7216 chr2 238688317 238688317 1 + C T rs142787144 238688313 + 238688293 238688333 41 GCGAGCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCC GCGAGCTTGGCGCTTAGGGGCTCCTGTGCCATGGCTCACCC < 41bp 1 0.482129193524247 1 0.30480819940567 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688313 chr2:238688317 . . 0 25 hm5C_associated_SNPs_4173 0 0 1 0 0 Ribosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_7216 DeepMRMD:1;iRNA_m5C:0.999536712157806 7217 chr2 238688317 238688317 1 + C T rs142787144 238688315 + 238688295 238688335 41 GAGCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCCCA GAGCTTGGCGCTTAGGGGCTCCTGTGCCATGGCTCACCCCA < 41bp 1 0.152498780382476 1 0.146390855312347 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688315 chr2:238688317 . . 0 23 hm5C_associated_SNPs_4174 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7217 DeepMRMD:1;iRNA_m5C:0.999536712157815 7218 chr2 238688317 238688317 1 + C T rs142787144 238688316 + 238688296 238688336 41 AGCTTGGCGCTTAGGGGCTCCCGTGCCATGGCTCACCCCAG AGCTTGGCGCTTAGGGGCTCCTGTGCCATGGCTCACCCCAG < 41bp 1 0.387328405682779 1 0.446983218193054 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 UTR3 Human protein_coding chr2:238688316 chr2:238688317 . . 0 22 hm5C_associated_SNPs_4175 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7218 DeepMRMD:1;iRNA_m5C:0.999536712157815 7219 chr2 239038781 239038781 1 + A C rs200935476 239038799 + 239038779 239038819 41 GGAGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA GGCGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA < 41bp 1 0.56325966049743 1 0.930317163467407 experiment 0.87348067900514 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ESPNL ENSG00000144488 CDS Human protein_coding chr2:239038799 chr2:239038781 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_4176 0 0 0 0 1 exosome 1 0.500231643921092 0.139365673065186 0.999536712157815 hm5C_site_7219 DeepMRMD:0.139365673065186;iRNA_m5C:0.999536712157815 7220 chr2 239039779 239039779 1 + G A rs73102306 239039761 + 239039741 239039781 41 CACCTGTGGCAGCAGCGCAGCACCATCACCCACCTGCTGGG CACCTGTGGCAGCAGCGCAGCACCATCACCCACCTGCTAGG < 41bp 1 0.484072534009476 1 0.18652155995369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ESPNL ENSG00000144488 CDS Human protein_coding chr2:239039761 chr2:239039779 synonymous SNV . 0 39 hm5C_associated_SNPs_4177 0 0 0 0 0 exosome 1 0.500231641627734 1 0.999536716744533 hm5C_site_7220 DeepMRMD:1;iRNA_m5C:0.999536716744533 7221 chr2 239355561 239355561 1 + A G rs2278768 239355557 + 239355537 239355577 41 CGATTAAAGCCTTCTAGTATCTCAATGAAAAGGGAGTTTCG CGATTAAAGCCTTCTAGTATCTCAGTGAAAAGGGAGTTTCG < 41bp 1 0.32843052794493 1 0.433859974145889 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASB1 ENSG00000065802 UTR3 Human protein_coding chr2:239355557 chr2:239355561 . . 0 25 hm5C_associated_SNPs_4180 0 0 1 0 0 Ribosome 1 0.500231644605236 1 0.999536710789529 hm5C_site_7221 DeepMRMD:1;iRNA_m5C:0.999536710789529 7222 chr2 239358852 239358852 1 + A T rs514795 239358848 + 239358828 239358868 41 GGACTGTGGACCCCGATGGGCCAGAGTCCTTGTGGCCCACA GGACTGTGGACCCCGATGGGCCAGTGTCCTTGTGGCCCACA < 41bp 1 0.484006619805103 1 0.200796753168106 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ASB1 ENSG00000065802 UTR3 Human protein_coding chr2:239358848 chr2:239358852 . . 0 25 hm5C_associated_SNPs_4181 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_7222 DeepMRMD:1;iRNA_m5C:0.999536712157816 7223 chr2 241406242 241406242 1 + G A rs3792218 241406236 + 241406216 241406256 41 ATGATGCATGATGCCCTCCCCTCAGCGCAGGCTGCAGAGCC ATGATGCATGATGCCCTCCCCTCAGCACAGGCTGCAGAGCC < 41bp 1 0.356414553058799 1 0.337333858013153 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPC1 ENSG00000063660 UTR3 Human protein_coding chr2:241406236 chr2:241406242 . . 0 27 hm5C_associated_SNPs_4182 0 0 0 0 0 Cytosol 1 0.500231643919712 1 0.999536712160576 hm5C_site_7223 DeepMRMD:1;iRNA_m5C:0.999536712160576 7224 chr2 241406701 241406701 1 + G C rs3792214 241406718 + 241406698 241406738 41 GCAGACGGGAATGCCTAGGTCCCTTCCCGACCCAGCCAGCT GCACACGGGAATGCCTAGGTCCCTTCCCGACCCAGCCAGCT < 41bp 1 0.101928395108585 1 0.0338656604290009 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPC1 ENSG00000063660 UTR3 Human protein_coding chr2:241406718 chr2:241406701 . . 0 4 hm5C_associated_SNPs_4184 0 0 0 0 0 Cytosol 1 0.500231644011731 1 0.999536711976538 hm5C_site_7224 DeepMRMD:1;iRNA_m5C:0.999536711976538 7225 chr2 241406701 241406701 1 + G C rs3792214 241406719 + 241406699 241406739 41 CAGACGGGAATGCCTAGGTCCCTTCCCGACCCAGCCAGCTG CACACGGGAATGCCTAGGTCCCTTCCCGACCCAGCCAGCTG < 41bp 1 0.0220582327991044 1 0.0453416705131531 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPC1 ENSG00000063660 UTR3 Human protein_coding chr2:241406719 chr2:241406701 . . 0 3 hm5C_associated_SNPs_4185 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7225 DeepMRMD:1;iRNA_m5C:0.999536712157815 7226 chr2 241406701 241406701 1 + G C rs3792214 241406720 + 241406700 241406740 41 AGACGGGAATGCCTAGGTCCCTTCCCGACCCAGCCAGCTGC ACACGGGAATGCCTAGGTCCCTTCCCGACCCAGCCAGCTGC < 41bp 1 0.208936769262806 1 0.0665760338306427 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPC1 ENSG00000063660 UTR3 Human protein_coding chr2:241406720 chr2:241406701 . . 0 2 hm5C_associated_SNPs_4186 0 0 0 0 0 Cytosol 1 0.500231644132773 1 0.999536711734454 hm5C_site_7226 DeepMRMD:1;iRNA_m5C:0.999536711734454 7227 chr2 241406725 241406725 1 + C T rs35984995 241406718 + 241406698 241406738 41 GCAGACGGGAATGCCTAGGTCCCTTCCCGACCCAGCCAGCT GCAGACGGGAATGCCTAGGTCCCTTCCTGACCCAGCCAGCT < 41bp 1 0.0841054304271407 1 0.0371392369270325 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPC1 ENSG00000063660 UTR3 Human protein_coding chr2:241406718 chr2:241406725 . . 0 28 hm5C_associated_SNPs_4187 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7227 DeepMRMD:1;iRNA_m5C:0.999536712157815 7228 chr2 241406725 241406725 1 + C T rs35984995 241406719 + 241406699 241406739 41 CAGACGGGAATGCCTAGGTCCCTTCCCGACCCAGCCAGCTG CAGACGGGAATGCCTAGGTCCCTTCCTGACCCAGCCAGCTG < 41bp 1 0.0297020656902881 1 0.0456604063510895 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPC1 ENSG00000063660 UTR3 Human protein_coding chr2:241406719 chr2:241406725 . . 0 27 hm5C_associated_SNPs_4188 0 0 0 0 0 Cytosol 1 0.500231643909359 1 0.999536712181282 hm5C_site_7228 DeepMRMD:1;iRNA_m5C:0.999536712181282 7229 chr2 241406725 241406725 1 + C T rs35984995 241406720 + 241406700 241406740 41 AGACGGGAATGCCTAGGTCCCTTCCCGACCCAGCCAGCTGC AGACGGGAATGCCTAGGTCCCTTCCTGACCCAGCCAGCTGC < 41bp 1 0.22430735640938 1 0.0638946294784546 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPC1 ENSG00000063660 UTR3 Human protein_coding chr2:241406720 chr2:241406725 . . 0 26 hm5C_associated_SNPs_4189 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_7229 DeepMRMD:1;iRNA_m5C:0.999536712157815 7230 chr2 241406730 241406730 1 + C T rs571952745 241406718 + 241406698 241406738 41 GCAGACGGGAATGCCTAGGTCCCTTCCCGACCCAGCCAGCT GCAGACGGGAATGCCTAGGTCCCTTCCCGACCTAGCCAGCT < 41bp 1 0.0952604201363662 1 0.0438803434371948 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPC1 ENSG00000063660 UTR3 Human protein_coding chr2:241406718 chr2:241406730 . . 0 33 hm5C_associated_SNPs_4190 0 0 0 0 0 Cytosol 1 0.500231643921085 1 0.99953671215783 hm5C_site_7230 DeepMRMD:1;iRNA_m5C:0.99953671215783 7231 chr2 241406730 241406730 1 + C T rs571952745 241406719 + 241406699 241406739 41 CAGACGGGAATGCCTAGGTCCCTTCCCGACCCAGCCAGCTG CAGACGGGAATGCCTAGGTCCCTTCCCGACCTAGCCAGCTG < 41bp 1 0.0256699103473874 1 0.0568814873695374 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPC1 ENSG00000063660 UTR3 Human protein_coding chr2:241406719 chr2:241406730 . . 0 32 hm5C_associated_SNPs_4191 0 0 0 0 0 Cytosol 1 0.50023164393271 1 0.99953671213458 hm5C_site_7231 DeepMRMD:1;iRNA_m5C:0.99953671213458 7232 chr2 241406730 241406730 1 + C T rs571952745 241406720 + 241406700 241406740 41 AGACGGGAATGCCTAGGTCCCTTCCCGACCCAGCCAGCTGC AGACGGGAATGCCTAGGTCCCTTCCCGACCTAGCCAGCTGC < 41bp 1 0.15988331602693 1 0.0758634507656097 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPC1 ENSG00000063660 UTR3 Human protein_coding chr2:241406720 chr2:241406730 . . 0 31 hm5C_associated_SNPs_4192 0 0 0 0 0 Cytosol 1 0.5002316439209 1 0.9995367121582 hm5C_site_7232 DeepMRMD:1;iRNA_m5C:0.9995367121582 7233 chr2 241500286 241500286 1 + G A rs114887011 241500273 + 241500253 241500293 41 TCTCCCGCCAGCAGCCCGGCCCGCGCGCGCCCGGCGTGGCA TCTCCCGCCAGCAGCCCGGCCCGCGCGCGCCCGACGTGGCA < 41bp 1 0.406546514196315 1 0.129258006811142 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKMY1;DUSP28 ENSG00000144504;ENSG00000188542 CDS Human other chr2:241500273 chr2:241500286 nonsynonymous SNV 0.044 0 34 hm5C_associated_SNPs_4193 0 0 0 0 0 unknown 1 0.500231873437828 1 0.999536253124345 hm5C_site_7233 DeepMRMD:1;iRNA_m5C:0.999536253124345 7234 chr2 241500481 241500481 1 + C A rs571403854 241500464 + 241500444 241500484 41 ACCGCGTACCTCATGCGGCACCGCGGCCTCAGCCTGGCGAA ACCGCGTACCTCATGCGGCACCGCGGCCTCAGCCTGGAGAA < 41bp 1 0.466624320790833 1 0.0559470951557159 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DUSP28 ENSG00000188542 CDS Human protein_coding chr2:241500464 chr2:241500481 nonsynonymous SNV 0.002 1 38 hm5C_associated_SNPs_4194 0 0 1 0 1 exosome 1 0.500231638816876 1 0.999536722366248 hm5C_site_7234 DeepMRMD:1;iRNA_m5C:0.999536722366248 7235 chr2 241514984 241514984 1 + C T rs531855875 241514997 + 241514977 241515017 41 TCCTGAGCTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC TCCTGAGTTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC < 41bp 1 0.630739300358941 1 0.243792921304703 experiment 0.738521399282119 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514997 chr2:241514984 synonymous SNV . 0 8 hm5C_associated_SNPs_4195 0 0 1 0 1 chromatin 1 0.500231643920844 1 0.999536712158313 hm5C_site_7235 DeepMRMD:1;iRNA_m5C:0.999536712158313 7236 chr2 241569692 241569692 1 + C T rs3749171 241569690 + 241569670 241569710 41 TACATGAGCATCAGCCTGGTCACGGCCATCGCCGTGGACCG TACATGAGCATCAGCCTGGTCATGGCCATCGCCGTGGACCG < 41bp 1 0.563787550504326 1 0.18079885840416 experiment 0.872424898991348 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPR35 ENSG00000178623 CDS Human protein_coding chr2:241569690 chr2:241569692 nonsynonymous SNV 0.011 1 23 hm5C_associated_SNPs_4196 0 1 0 0 0 Ribosome 1 0.500231643929134 1 0.999536712141733 hm5C_site_7236 DeepMRMD:1;iRNA_m5C:0.999536712141733 7237 chr3 4856234 4856234 1 + G A rs901854 4856235 + 4856215 4856255 41 TAGGAGATGTACTCAGGAAGCCGTCCAAAGAGGTAAATTAA TAGGAGATGTACTCAGGAAACCGTCCAAAGAGGTAAATTAA < 41bp 1 0.0466667053153709 1 0.454815953969955 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4856235 chr3:4856234 synonymous SNV . 0 20 hm5C_associated_SNPs_4197 2 0 1 0 1 Endoplasmic reticulum 1 0.500231662182135 1 0.99953667563573 hm5C_site_7237 DeepMRMD:1;iRNA_m5C:0.99953667563573 not specified not specified 7238 chr3 5026638 5026638 1 + T C rs114360023 5026640 + 5026620 5026660 41 TATTAAAAAGGAAAATGTTTCAGATGTTTATTTGTATAATT TATTAAAAAGGAAAATGTCTCAGATGTTTATTTGTATAATT < 41bp 1 0.220811975823543 1 0.271274238824844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BHLHE40 ENSG00000134107 UTR3 Human protein_coding chr3:5026640 chr3:5026638 . . 0 19 hm5C_associated_SNPs_4198 0 0 1 10 0 chromatin 1 0.500231194080489 1 0.999537611839023 hm5C_site_7238 DeepMRMD:1;iRNA_m5C:0.999537611839023 7239 chr3 5229643 5229643 1 + C T rs144177905 5229644 + 5229624 5229664 41 GTCTGAGGAGCCCCGACGGCCCCGCGTCGCCCACCTCGGGG GTCTGAGGAGCCCCGACGGTCCCGCGTCGCCCACCTCGGGG < 41bp 1 0.695135699839245 1 0.112476140260696 experiment 0.609728600321511 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDEM1 ENSG00000134109;ENSG00000268509 CDS Human other chr3:5229644 chr3:5229643 nonsynonymous SNV . 0 20 hm5C_associated_SNPs_4199 0 0 1 0 0 Ribosome 1 0.50015251118705 1 0.9996949776259 hm5C_site_7239 DeepMRMD:1;iRNA_m5C:0.9996949776259 7240 chr3 5229643 5229643 1 + C T rs144177905 5229651 + 5229631 5229671 41 GAGCCCCGACGGCCCCGCGTCGCCCACCTCGGGGCCCGTGG GAGCCCCGACGGTCCCGCGTCGCCCACCTCGGGGCCCGTGG < 41bp 1 0.585097972125915 1 0.0973667502403259 experiment 0.82980405574817 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDEM1 ENSG00000134109;ENSG00000268509 CDS Human other chr3:5229651 chr3:5229643 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_4200 0 0 1 0 0 Ribosome 1 0.500231633080691 1 0.999536733838619 hm5C_site_7240 DeepMRMD:1;iRNA_m5C:0.999536733838619 7241 chr3 5229643 5229643 1 + C T rs144177905 5229653 + 5229633 5229673 41 GCCCCGACGGCCCCGCGTCGCCCACCTCGGGGCCCGTGGGC GCCCCGACGGTCCCGCGTCGCCCACCTCGGGGCCCGTGGGC < 41bp 1 0.416609136328687 1 0.184034198522568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDEM1 ENSG00000134109;ENSG00000268509 CDS Human other chr3:5229653 chr3:5229643 nonsynonymous SNV . 0 11 hm5C_associated_SNPs_4201 0 0 1 0 0 Ribosome 1 0.500231639476727 1 0.999536721046546 hm5C_site_7241 DeepMRMD:1;iRNA_m5C:0.999536721046546 7242 chr3 5229643 5229643 1 + C T rs144177905 5229654 + 5229634 5229674 41 CCCCGACGGCCCCGCGTCGCCCACCTCGGGGCCCGTGGGCC CCCCGACGGTCCCGCGTCGCCCACCTCGGGGCCCGTGGGCC < 41bp 1 0.408703404665561 1 0.127132415771484 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDEM1 ENSG00000134109;ENSG00000268509 CDS Human other chr3:5229654 chr3:5229643 nonsynonymous SNV . 0 10 hm5C_associated_SNPs_4202 0 0 1 0 0 Ribosome 1 0.500231643078694 1 0.999536713842612 hm5C_site_7242 DeepMRMD:1;iRNA_m5C:0.999536713842612 7243 chr3 5229654 5229654 1 + C A rs556204754 5229643 + 5229623 5229663 41 CGTCTGAGGAGCCCCGACGGCCCCGCGTCGCCCACCTCGGG CGTCTGAGGAGCCCCGACGGCCCCGCGTCGCACACCTCGGG < 41bp 1 0.623504480685396 1 0.265472263097763 experiment 0.752991038629208 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDEM1 ENSG00000134109;ENSG00000268509 CDS Human other chr3:5229643 chr3:5229654 nonsynonymous SNV 0.275 2 32 hm5C_associated_SNPs_4204 0 0 1 0 0 Ribosome 1 0.500231652835535 1 0.999536694328929 hm5C_site_7243 DeepMRMD:1;iRNA_m5C:0.999536694328929 7244 chr3 5229654 5229654 1 + C A rs556204754 5229644 + 5229624 5229664 41 GTCTGAGGAGCCCCGACGGCCCCGCGTCGCCCACCTCGGGG GTCTGAGGAGCCCCGACGGCCCCGCGTCGCACACCTCGGGG < 41bp 1 0.656172142150694 1 0.315932780504227 experiment 0.687655715698611 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDEM1 ENSG00000134109;ENSG00000268509 CDS Human other chr3:5229644 chr3:5229654 nonsynonymous SNV 0.275 2 31 hm5C_associated_SNPs_4205 0 0 1 0 0 Ribosome 1 0.500231740674691 1 0.999536518650617 hm5C_site_7244 DeepMRMD:1;iRNA_m5C:0.999536518650617 7245 chr3 5229654 5229654 1 + C A rs556204754 5229651 + 5229631 5229671 41 GAGCCCCGACGGCCCCGCGTCGCCCACCTCGGGGCCCGTGG GAGCCCCGACGGCCCCGCGTCGCACACCTCGGGGCCCGTGG < 41bp 1 0.532954627202446 1 0.104568839073181 experiment 0.934090745595108 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDEM1 ENSG00000134109;ENSG00000268509 CDS Human other chr3:5229651 chr3:5229654 nonsynonymous SNV 0.275 2 24 hm5C_associated_SNPs_4206 0 0 1 0 0 Ribosome 1 0.500231646559208 1 0.999536706881585 hm5C_site_7245 DeepMRMD:1;iRNA_m5C:0.999536706881585 7246 chr3 5229654 5229654 1 + C A rs556204754 5229653 + 5229633 5229673 41 GCCCCGACGGCCCCGCGTCGCCCACCTCGGGGCCCGTGGGC GCCCCGACGGCCCCGCGTCGCACACCTCGGGGCCCGTGGGC < 41bp 1 0.686695411593746 1 0.212285667657852 experiment 0.626609176812507 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDEM1 ENSG00000134109;ENSG00000268509 CDS Human other chr3:5229653 chr3:5229654 nonsynonymous SNV 0.275 2 22 hm5C_associated_SNPs_4207 0 0 1 0 0 Ribosome 1 0.500231691971104 1 0.999536616057791 hm5C_site_7246 DeepMRMD:1;iRNA_m5C:0.999536616057791 7247 chr3 5257732 5257732 1 + A C rs142697440 5257736 + 5257716 5257756 41 TAGGAATTTCTGTGCAACACCTCACCACGTCTGGTTAATCC TAGGAATTTCTGTGCACCACCTCACCACGTCTGGTTAATCC < 41bp 1 0.133510318612494 1 0.0613951683044434 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EDEM1 ENSG00000134109 UTR3 Human protein_coding chr3:5257736 chr3:5257732 . . 0 17 hm5C_associated_SNPs_4209 0 0 1 0 0 Ribosome 1 0.500231642215972 1 0.999536715568056 hm5C_site_7247 DeepMRMD:1;iRNA_m5C:0.999536715568056 7248 chr3 5257734 5257734 1 + A G rs190594528 5257736 + 5257716 5257756 41 TAGGAATTTCTGTGCAACACCTCACCACGTCTGGTTAATCC TAGGAATTTCTGTGCAACGCCTCACCACGTCTGGTTAATCC < 41bp 1 0.123051560090544 1 0.0568059384822845 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EDEM1 ENSG00000134109 UTR3 Human protein_coding chr3:5257736 chr3:5257734 . . 0 19 hm5C_associated_SNPs_4210 0 0 1 0 0 Ribosome 1 0.500231645170829 1 0.999536709658342 hm5C_site_7248 DeepMRMD:1;iRNA_m5C:0.999536709658342 7249 chr3 5257744 5257744 1 + G A rs79714971 5257736 + 5257716 5257756 41 TAGGAATTTCTGTGCAACACCTCACCACGTCTGGTTAATCC TAGGAATTTCTGTGCAACACCTCACCACATCTGGTTAATCC < 41bp 1 0.145505995273712 1 0.0528227090835571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EDEM1 ENSG00000134109 UTR3 Human protein_coding chr3:5257736 chr3:5257744 . . 0 29 hm5C_associated_SNPs_4211 0 0 1 0 0 Ribosome 1 0.50023161007897 1 0.999536779842059 hm5C_site_7249 DeepMRMD:1;iRNA_m5C:0.999536779842059 7250 chr3 8579093 8579093 1 + C T rs139605755 8579084 + 8579064 8579104 41 AAAGATCCCACTTTTGACACCATCACCTACGAGTGGGCTCC AAAGATCCCACTTTTGACACCATCACCTATGAGTGGGCTCC < 41bp 1 0.23962990763298 1 0.0807181000709534 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8579084 chr3:8579093 synonymous SNV . 0 30 hm5C_associated_SNPs_4212 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7250 DeepMRMD:1;iRNA_m5C:0.999536712157815 7251 chr3 9439541 9439541 1 + C G rs368108766 9439545 + 9439525 9439565 41 CCCCACCTCACGGGTACGGGCCATTCCCGGCCAGGAAACGC CCCCACCTCACGGGTAGGGGCCATTCCCGGCCAGGAAACGC < 41bp 1 0.0779726921632048 1 0.0174644291400909 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD5 ENSG00000206573 ncRNA_intronic Human antisense chr3:9439545 chr3:9439541 . . 0 17 hm5C_associated_SNPs_4213 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7251 DeepMRMD:1;iRNA_m5C:0.999536712157815 7252 chr3 9517870 9517870 1 + G A rs529596973 9517850 + 9517830 9517870 41 GCTGCCTCTGGAACCTAGGCCGAGCATATTGCTGAGGAACG GCTGCCTCTGGAACCTAGGCCGAGCATATTGCTGAGGAACA < 41bp 1 0.381247692037853 1 0.433860510587692 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SETD5 ENSG00000168137 UTR3 Human protein_coding chr3:9517850 chr3:9517870 . . 0 41 hm5C_associated_SNPs_4214 0 0 1 1 0 Nucleus 1 0.500231642222229 1 0.999536715555541 hm5C_site_7252 DeepMRMD:1;iRNA_m5C:0.999536715555541 7253 chr3 9518807 9518807 1 + G C rs17081119 9518819 + 9518799 9518839 41 GTGATTGTGTGTGGGCCTGCCCCACATTTCTCTGGGGGATG GTGATTGTCTGTGGGCCTGCCCCACATTTCTCTGGGGGATG < 41bp 1 0.13554200615385 1 0.110848069190979 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SETD5 ENSG00000168137 UTR3 Human protein_coding chr3:9518819 chr3:9518807 . . 0 9 hm5C_associated_SNPs_4215 0 0 1 0 0 Nucleus 1 0.500231643922964 1 0.999536712154073 hm5C_site_7253 DeepMRMD:1;iRNA_m5C:0.999536712154073 7254 chr3 9773468 9773468 1 + G A rs375786132 9773466 + 9773446 9773486 41 TGCTGCCGCCGCCGCTGCCACAGCCTTTGCCGCCACGGTCT TGCTGCCGCCGCCGCTGCCACAACCTTTGCCGCCACGGTCT < 41bp 1 0.398336868922576 1 0.189167231321335 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BRPF1 ENSG00000156983 UTR5 Human protein_coding chr3:9773466 chr3:9773468 . . 0 23 hm5C_associated_SNPs_4216 0 0 1 0 0 Nucleus 1 0.500231643921599 1 0.999536712156803 hm5C_site_7254 DeepMRMD:1;iRNA_m5C:0.999536712156803 7255 chr3 9775887 9775887 1 + C T rs116359925 9775905 + 9775885 9775925 41 TACGAGTGCCCGGTGGAGACCTGCCGAAAGGTCTACAAGAG TATGAGTGCCCGGTGGAGACCTGCCGAAAGGTCTACAAGAG < 41bp 1 0.444770478167516 1 0.354015231132507 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9775905 chr3:9775887 synonymous SNV . 0 3 hm5C_associated_SNPs_4217 0 0 1 0 1 Nucleus 1 0.500231644025971 1 0.999536711948058 hm5C_site_7255 DeepMRMD:1;iRNA_m5C:0.999536711948058 7256 chr3 9776019 9776019 1 + G A rs112873311 9776023 + 9776003 9776043 41 AGCACAAGAAAAAGGGGCGCCAGTCACGCCCAGCCAACAAG AGCACAAGAAAAAGGGACGCCAGTCACGCCCAGCCAACAAG < 41bp 1 0.147984030115363 1 0.194527208805084 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9776023 chr3:9776019 synonymous SNV . 0 17 hm5C_associated_SNPs_4218 0 0 0 0 0 Nucleus 1 0.500231599455737 1 0.999536801088526 hm5C_site_7256 DeepMRMD:1;iRNA_m5C:0.999536801088526 7257 chr3 9848731 9848731 1 + G A rs41278553 9848717 + 9848697 9848737 41 TGCTCCCACGCTAGCTGTCCCTTTTCTGATTCTGGTGGATC TGCTCCCACGCTAGCTGTCCCTTTTCTGATTCTGATGGATC < 41bp 1 0.0274783226273892 1 0.0163161158561707 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARPC4 ENSG00000241553 UTR3 Human protein_coding chr3:9848717 chr3:9848731 . . 0 35 hm5C_associated_SNPs_4219 0 0 1 0 0 Cytosol 1 0.50023164316314 1 0.99953671367372 hm5C_site_7257 DeepMRMD:1;iRNA_m5C:0.99953671367372 7258 chr3 10143189 10143189 1 + C T rs552573592 10143190 + 10143170 10143210 41 AGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACGAC AGCGATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGACGAC < 41bp 1 0.377671384512054 1 0.80147123336792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FANCD2 ENSG00000144554 UTR3 Human protein_coding chr3:10143190 chr3:10143189 . . 0 20 hm5C_associated_SNPs_4221 0 0 1 1 0 Cytosol 1 0.500231232230438 0.39705753326416 0.999537535539124 hm5C_site_7258 DeepMRMD:0.39705753326416;iRNA_m5C:0.999537535539124 7259 chr3 10143189 10143189 1 + C T rs552573592 10143192 + 10143172 10143212 41 CGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACGACAG CGATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGACGACAG < 41bp 1 0.477930427506577 1 0.356123507022858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control FANCD2 ENSG00000144554 UTR3 Human protein_coding chr3:10143192 chr3:10143189 . . 0 18 hm5C_associated_SNPs_4222 0 0 1 1 0 Cytosol 1 0.500231727921837 1 0.999536544156326 hm5C_site_7259 DeepMRMD:1;iRNA_m5C:0.999536544156326 7260 chr3 10143189 10143189 1 + C T rs552573592 10143193 + 10143173 10143213 41 GATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACGACAGG GATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGACGACAGG < 41bp 1 0.525375101721251 1 0.382387489080429 experiment 0.949249796557497 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control FANCD2 ENSG00000144554 UTR3 Human protein_coding chr3:10143193 chr3:10143189 . . 0 17 hm5C_associated_SNPs_4223 0 0 1 1 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_7260 DeepMRMD:1;iRNA_m5C:0.999536712157815 7261 chr3 10143328 10143328 1 + A T rs59318799 10143326 + 10143306 10143346 41 ATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGC ATCCACCTGCCTCAGCCTCCCATAGTGCTGGGATTACAGGC < 41bp 1 0.160228585540681 1 0.115605801343918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FANCD2 ENSG00000144554 UTR3 Human protein_coding chr3:10143326 chr3:10143328 . . 0 23 hm5C_associated_SNPs_4225 0 0 0 0 0 Cytosol 1 0.500231658104778 1 0.999536683790443 hm5C_site_7261 DeepMRMD:1;iRNA_m5C:0.999536683790443 7262 chr3 10143328 10143328 1 + A T rs59318799 10143346 + 10143326 10143366 41 CAAAGTGCTGGGATTACAGGCATGAGCCACCGCTCCCAGCC CATAGTGCTGGGATTACAGGCATGAGCCACCGCTCCCAGCC < 41bp 1 0.579139562134147 1 0.623299360275269 experiment 0.841720875731705 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control FANCD2 ENSG00000144554 UTR3 Human protein_coding chr3:10143346 chr3:10143328 . . 0 3 hm5C_associated_SNPs_4227 0 0 0 0 0 Cytosol 1 0.500231644015089 0.753401279449462 0.999536711969821 hm5C_site_7262 DeepMRMD:0.753401279449462;iRNA_m5C:0.999536711969821 7263 chr3 10192647 10192647 1 + G A rs534502397 10192632 + 10192612 10192652 41 TTGTCACCCAGGCTGGAGTGCAGTGGCGCCATCTCGGCTCA TTGTCACCCAGGCTGGAGTGCAGTGGCGCCATCTCAGCTCA < 41bp 1 0.698442451607394 1 0.396064192056656 experiment 0.603115096785212 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192632 chr3:10192647 . . 0 36 hm5C_associated_SNPs_4228 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7263 DeepMRMD:1;iRNA_m5C:0.999536712157815 7264 chr3 10192647 10192647 1 + G A rs534502397 10192649 + 10192629 10192669 41 GTGCAGTGGCGCCATCTCGGCTCACTGCAACCTCTGCCTCC GTGCAGTGGCGCCATCTCAGCTCACTGCAACCTCTGCCTCC < 41bp 1 0.449553727072264 1 0.0517508387565613 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192649 chr3:10192647 . . 0 19 hm5C_associated_SNPs_4229 0 0 0 0 0 Ribosome 1 0.500232440353526 1 0.999535119292948 hm5C_site_7264 DeepMRMD:1;iRNA_m5C:0.999535119292948 7265 chr3 10192647 10192647 1 + G A rs534502397 10192651 + 10192631 10192671 41 GCAGTGGCGCCATCTCGGCTCACTGCAACCTCTGCCTCCTG GCAGTGGCGCCATCTCAGCTCACTGCAACCTCTGCCTCCTG < 41bp 1 0.48296958826591 1 0.106204777956009 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192651 chr3:10192647 . . 0 17 hm5C_associated_SNPs_4230 0 0 0 0 0 Ribosome 1 0.500272496524381 1 0.999455006951238 hm5C_site_7265 DeepMRMD:1;iRNA_m5C:0.999455006951238 7266 chr3 10192647 10192647 1 + G A rs534502397 10192656 + 10192636 10192676 41 GGCGCCATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTC GGCGCCATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTC < 41bp 1 0.388581514516312 1 0.273491889238358 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192656 chr3:10192647 . . 0 12 hm5C_associated_SNPs_4231 0 0 0 0 0 Ribosome 1 0.500229565233745 1 0.99954086953251 hm5C_site_7266 DeepMRMD:1;iRNA_m5C:0.99954086953251 7267 chr3 10192647 10192647 1 + G A rs534502397 10192659 + 10192639 10192679 41 GCCATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCACG GCCATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCACG < 41bp 1 0.0872710832498438 1 0.0377774238586426 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192659 chr3:10192647 . . 0 9 hm5C_associated_SNPs_4232 0 0 0 0 0 Ribosome 1 0.500231643541342 1 0.999536712917315 hm5C_site_7267 DeepMRMD:1;iRNA_m5C:0.999536712917315 7268 chr3 10192647 10192647 1 + G A rs534502397 10192660 + 10192640 10192680 41 CCATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCACGT CCATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCACGT < 41bp 1 0.423265643844201 1 0.113036334514618 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192660 chr3:10192647 . . 0 8 hm5C_associated_SNPs_4233 0 0 0 0 0 Ribosome 1 0.500235689508712 1 0.999528620982576 hm5C_site_7268 DeepMRMD:1;iRNA_m5C:0.999528620982576 7269 chr3 10192647 10192647 1 + G A rs534502397 10192662 + 10192642 10192682 41 ATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCACGTAA ATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCACGTAA < 41bp 1 0.645971867640925 1 0.187081158161163 experiment 0.708056264718151 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192662 chr3:10192647 . . 0 6 hm5C_associated_SNPs_4234 0 0 0 0 0 Ribosome 1 0.500231571704055 1 0.99953685659189 hm5C_site_7269 DeepMRMD:1;iRNA_m5C:0.99953685659189 7270 chr3 10192647 10192647 1 + G A rs534502397 10192665 + 10192645 10192685 41 TCGGCTCACTGCAACCTCTGCCTCCTGGGTTCACGTAATCC TCAGCTCACTGCAACCTCTGCCTCCTGGGTTCACGTAATCC < 41bp 1 0.060083026004619 1 0.0729322731494904 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192665 chr3:10192647 . . 0 3 hm5C_associated_SNPs_4235 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7270 DeepMRMD:1;iRNA_m5C:0.999536712157815 7271 chr3 10192672 10192672 1 + G A rs1681669 10192656 + 10192636 10192676 41 GGCGCCATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTC GGCGCCATCTCGGCTCACTGCAACCTCTGCCTCCTGAGTTC < 41bp 1 0.401074125868792 1 0.258765459060669 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192656 chr3:10192672 . . 0 37 hm5C_associated_SNPs_4236 1 0 1 0 0 Ribosome 1 0.500057328589938 1 0.999885342820124 hm5C_site_7271 DeepMRMD:1;iRNA_m5C:0.999885342820124 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 7272 chr3 10192672 10192672 1 + G A rs1681669 10192659 + 10192639 10192679 41 GCCATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCACG GCCATCTCGGCTCACTGCAACCTCTGCCTCCTGAGTTCACG < 41bp 1 0.0983647474696938 1 0.0541943311691284 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192659 chr3:10192672 . . 0 34 hm5C_associated_SNPs_4237 1 0 1 0 0 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_7272 DeepMRMD:1;iRNA_m5C:0.99953671215782 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 7273 chr3 10192672 10192672 1 + G A rs1681669 10192660 + 10192640 10192680 41 CCATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCACGT CCATCTCGGCTCACTGCAACCTCTGCCTCCTGAGTTCACGT < 41bp 1 0.45711905363167 1 0.0926425457000732 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192660 chr3:10192672 . . 0 33 hm5C_associated_SNPs_4238 1 0 1 0 0 Ribosome 1 0.500235137949491 1 0.999529724101019 hm5C_site_7273 DeepMRMD:1;iRNA_m5C:0.999529724101019 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 7274 chr3 10192672 10192672 1 + G A rs1681669 10192662 + 10192642 10192682 41 ATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCACGTAA ATCTCGGCTCACTGCAACCTCTGCCTCCTGAGTTCACGTAA < 41bp 1 0.691397166157038 1 0.121399223804474 experiment 0.617205667685924 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192662 chr3:10192672 . . 0 31 hm5C_associated_SNPs_4239 1 0 1 0 0 Ribosome 1 0.500234259728401 1 0.999531480543197 hm5C_site_7274 DeepMRMD:1;iRNA_m5C:0.999531480543197 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 7275 chr3 10192672 10192672 1 + G A rs1681669 10192665 + 10192645 10192685 41 TCGGCTCACTGCAACCTCTGCCTCCTGGGTTCACGTAATCC TCGGCTCACTGCAACCTCTGCCTCCTGAGTTCACGTAATCC < 41bp 1 0.0574981900069447 1 0.0970288217067719 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192665 chr3:10192672 . . 0 28 hm5C_associated_SNPs_4240 1 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7275 DeepMRMD:1;iRNA_m5C:0.999536712157815 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 7276 chr3 10192672 10192672 1 + G A rs1681669 10192688 + 10192668 10192708 41 CCTGGGTTCACGTAATCCTCCTGAGTAGCTGGGATTACAGG CCTGAGTTCACGTAATCCTCCTGAGTAGCTGGGATTACAGG < 41bp 1 0.58688216232847 1 0.402793765068054 experiment 0.82623567534306 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192688 chr3:10192672 . . 0 5 hm5C_associated_SNPs_4241 1 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7276 DeepMRMD:1;iRNA_m5C:0.999536712157815 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 7277 chr3 10192830 10192830 1 + G C rs72563745 10192810 + 10192790 10192830 41 CTGACCTCAGGTGATCCGCCCACCTCAGCCTCCCAAAATGG CTGACCTCAGGTGATCCGCCCACCTCAGCCTCCCAAAATGC < 41bp 1 0.300571476496558 1 0.0451071560382843 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192810 chr3:10192830 . . 0 41 hm5C_associated_SNPs_4242 0 0 1 0 0 Ribosome 1 0.500231670096935 1 0.99953665980613 hm5C_site_7277 DeepMRMD:1;iRNA_m5C:0.99953665980613 7278 chr3 10192830 10192830 1 + G C rs72563745 10192812 + 10192792 10192832 41 GACCTCAGGTGATCCGCCCACCTCAGCCTCCCAAAATGGTG GACCTCAGGTGATCCGCCCACCTCAGCCTCCCAAAATGCTG < 41bp 1 0.364409919407355 1 0.0516096949577332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192812 chr3:10192830 . . 0 39 hm5C_associated_SNPs_4243 0 0 1 0 0 Ribosome 1 0.500231643910861 1 0.999536712178278 hm5C_site_7278 DeepMRMD:1;iRNA_m5C:0.999536712178278 7279 chr3 10192830 10192830 1 + G C rs72563745 10192813 + 10192793 10192833 41 ACCTCAGGTGATCCGCCCACCTCAGCCTCCCAAAATGGTGG ACCTCAGGTGATCCGCCCACCTCAGCCTCCCAAAATGCTGG < 41bp 1 0.540408973280966 1 0.292221307754517 experiment 0.919182053438067 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192813 chr3:10192830 . . 0 38 hm5C_associated_SNPs_4244 0 0 1 0 0 Ribosome 1 0.500231642130322 1 0.999536715739356 hm5C_site_7279 DeepMRMD:1;iRNA_m5C:0.999536715739356 7280 chr3 10192830 10192830 1 + G C rs72563745 10192815 + 10192795 10192835 41 CTCAGGTGATCCGCCCACCTCAGCCTCCCAAAATGGTGGGA CTCAGGTGATCCGCCCACCTCAGCCTCCCAAAATGCTGGGA < 41bp 1 0.630948977155533 1 0.465561211109161 experiment 0.738102045688935 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10192815 chr3:10192830 . . 0 36 hm5C_associated_SNPs_4245 0 0 1 0 0 Ribosome 1 0.500233308171209 1 0.999533383657582 hm5C_site_7280 DeepMRMD:1;iRNA_m5C:0.999533383657582 7281 chr3 10193789 10193789 1 + C T rs140614750 10193785 + 10193765 10193805 41 AATCAGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCA AATCAGGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCA < 41bp 1 0.611062120907308 1 0.152463376522064 experiment 0.777875758185383 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10193785 chr3:10193789 . . 0 25 hm5C_associated_SNPs_4246 1 0 0 0 0 Ribosome 1 0.500231637585057 1 0.999536724829885 hm5C_site_7281 DeepMRMD:1;iRNA_m5C:0.999536724829885 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 7282 chr3 10193789 10193789 1 + C T rs140614750 10193787 + 10193767 10193807 41 TCAGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACT TCAGGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCACT < 41bp 1 0.624572853381349 1 0.100400745868683 experiment 0.750854293237303 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10193787 chr3:10193789 . . 0 23 hm5C_associated_SNPs_4247 1 0 0 0 0 Ribosome 1 0.500230737077 1 0.999538525846 hm5C_site_7282 DeepMRMD:1;iRNA_m5C:0.999538525846 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 7283 chr3 10193789 10193789 1 + C T rs140614750 10193791 + 10193771 10193811 41 GCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGG GCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGG < 41bp 1 0.321088745775261 1 0.0405251681804657 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10193791 chr3:10193789 . . 0 19 hm5C_associated_SNPs_4248 1 0 0 0 0 Ribosome 1 0.500231643581468 1 0.999536712837065 hm5C_site_7283 DeepMRMD:1;iRNA_m5C:0.999536712837065 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 7284 chr3 10193789 10193789 1 + C T rs140614750 10193799 + 10193779 10193819 41 TGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGTCGA TGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGTCGA < 41bp 1 0.371826343637293 1 0.100854247808456 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10193799 chr3:10193789 . . 0 11 hm5C_associated_SNPs_4250 1 0 0 0 0 Ribosome 1 0.500231977688496 1 0.999536044623009 hm5C_site_7284 DeepMRMD:1;iRNA_m5C:0.999536044623009 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 7285 chr3 10193789 10193789 1 + C T rs140614750 10193800 + 10193780 10193820 41 GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGTCGAG GGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGTCGAG < 41bp 1 0.262994770215467 1 0.175430685281754 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10193800 chr3:10193789 . . 0 10 hm5C_associated_SNPs_4251 1 0 0 0 0 Ribosome 1 0.500231627673315 1 0.99953674465337 hm5C_site_7285 DeepMRMD:1;iRNA_m5C:0.99953674465337 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 7286 chr3 10193789 10193789 1 + C T rs140614750 10193804 + 10193784 10193824 41 GCTCACGCCTGTAATCCCAGCACTTTGGGAGGTCGAGGTGG GCTCATGCCTGTAATCCCAGCACTTTGGGAGGTCGAGGTGG < 41bp 1 0.444239593484838 1 0.0583259761333466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control VHL ENSG00000134086 UTR3 Human protein_coding chr3:10193804 chr3:10193789 . . 0 6 hm5C_associated_SNPs_4252 1 0 0 0 0 Ribosome 1 0.500231687307888 1 0.999536625384224 hm5C_site_7286 DeepMRMD:1;iRNA_m5C:0.999536625384224 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 7287 chr3 10284952 10284952 1 + C T rs374774009 10284961 + 10284941 10284981 41 ACTACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGT ACTACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGT < 41bp 1 0.324472801062756 1 0.0582112967967987 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284961 chr3:10284952 . . 0 12 hm5C_associated_SNPs_4254 0 0 1 8 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7287 DeepMRMD:1;iRNA_m5C:0.999536712157815 7288 chr3 10284952 10284952 1 + C T rs374774009 10284963 + 10284943 10284983 41 TACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGT TACTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGT < 41bp 1 0.414165181658649 1 0.19049996137619 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284963 chr3:10284952 . . 0 10 hm5C_associated_SNPs_4255 0 0 1 8 0 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_7288 DeepMRMD:1;iRNA_m5C:0.999536712157812 7289 chr3 10284952 10284952 1 + C T rs374774009 10284965 + 10284945 10284985 41 CTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG CTGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG < 41bp 1 0.0913680311330152 1 0.0911275446414948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284965 chr3:10284952 . . 0 8 hm5C_associated_SNPs_4256 0 0 1 8 0 Nucleus 1 0.500231644371798 1 0.999536711256404 hm5C_site_7289 DeepMRMD:1;iRNA_m5C:0.999536711256404 7290 chr3 10284952 10284952 1 + C T rs374774009 10284966 + 10284946 10284986 41 TGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG TGACCTTGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG < 41bp 1 0.254573523855758 1 0.0498310029506683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284966 chr3:10284952 . . 0 7 hm5C_associated_SNPs_4257 0 0 1 8 0 Nucleus 1 0.500231643921387 1 0.999536712157226 hm5C_site_7290 DeepMRMD:1;iRNA_m5C:0.999536712157226 7291 chr3 10284977 10284977 1 + A T rs116912227 10284961 + 10284941 10284981 41 ACTACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGT ACTACTGACCTCGTGATCTGCCCGCCTTGGCCTATCTAAGT < 41bp 1 0.346637005765539 1 0.280005395412445 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284961 chr3:10284977 . . 0 37 hm5C_associated_SNPs_4258 0 0 0 0 0 Nucleus 1 0.500231636191563 1 0.999536727616874 hm5C_site_7291 DeepMRMD:1;iRNA_m5C:0.999536727616874 7292 chr3 10284977 10284977 1 + A T rs116912227 10284963 + 10284943 10284983 41 TACTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGT TACTGACCTCGTGATCTGCCCGCCTTGGCCTATCTAAGTGT < 41bp 1 0.440688038229635 1 0.687534689903259 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284963 chr3:10284977 . . 0 35 hm5C_associated_SNPs_4259 0 0 0 0 0 Nucleus 1 0.500231634314257 0.624930620193482 0.999536731371486 hm5C_site_7292 DeepMRMD:0.624930620193482;iRNA_m5C:0.999536731371486 7293 chr3 10284977 10284977 1 + A T rs116912227 10284965 + 10284945 10284985 41 CTGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTG CTGACCTCGTGATCTGCCCGCCTTGGCCTATCTAAGTGTTG < 41bp 1 0.0866210545544411 1 0.0769570469856262 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284965 chr3:10284977 . . 0 33 hm5C_associated_SNPs_4260 0 0 0 0 0 Nucleus 1 0.500231627488761 1 0.999536745022479 hm5C_site_7293 DeepMRMD:1;iRNA_m5C:0.999536745022479 7294 chr3 10284977 10284977 1 + A T rs116912227 10284966 + 10284946 10284986 41 TGACCTCGTGATCTGCCCGCCTTGGCCTATCAAAGTGTTGG TGACCTCGTGATCTGCCCGCCTTGGCCTATCTAAGTGTTGG < 41bp 1 0.28781470010489 1 0.037537544965744 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRAK2 ENSG00000134070 UTR3 Human protein_coding chr3:10284966 chr3:10284977 . . 0 32 hm5C_associated_SNPs_4261 0 0 0 0 0 Nucleus 1 0.500231643915179 1 0.999536712169642 hm5C_site_7294 DeepMRMD:1;iRNA_m5C:0.999536712169642 7295 chr3 11303230 11303230 1 + T C rs59282565 11303244 + 11303224 11303264 41 CAAAAATGTGCCCTTTTGGCCGGGCATGGTAGCTCAAGCCT CAAAAACGTGCCCTTTTGGCCGGGCATGGTAGCTCAAGCCT < 41bp 1 0.631988669955704 1 0.428820371627808 experiment 0.736022660088593 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HRH1 ENSG00000196639 UTR3 Human protein_coding chr3:11303244 chr3:11303230 . . 0 7 hm5C_associated_SNPs_4262 0 0 0 0 0 nucleus 1 0.50023166811094 1 0.99953666377812 hm5C_site_7295 DeepMRMD:1;iRNA_m5C:0.99953666377812 7296 chr3 11596296 11596296 1 + G A rs570582042 11596287 + 11596267 11596307 41 CTCCCCTTCTCCATGCAGATCTGGGACATGAGCGATGATGA CTCCCCTTCTCCATGCAGATCTGGGACATAAGCGATGATGA < 41bp 1 0.594407483331401 1 0.654296159744263 experiment 0.811185033337198 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATG7 ENSG00000197548 CDS Human protein_coding chr3:11596287 chr3:11596296 nonsynonymous SNV 0.988 1 30 hm5C_associated_SNPs_4263 0 0 1 0 1 Cytosol 1 0.500231709393657 0.691407680511474 0.999536581212686 hm5C_site_7296 DeepMRMD:0.691407680511474;iRNA_m5C:0.999536581212686 7297 chr3 11596302 11596302 1 + T C rs8154 11596287 + 11596267 11596307 41 CTCCCCTTCTCCATGCAGATCTGGGACATGAGCGATGATGA CTCCCCTTCTCCATGCAGATCTGGGACATGAGCGACGATGA < 41bp 1 0.648273100640423 1 0.603167831897736 experiment 0.703453798719155 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATG7 ENSG00000197548 CDS Human protein_coding chr3:11596287 chr3:11596302 synonymous SNV . 0 36 hm5C_associated_SNPs_4264 0 0 1 0 1 Cytosol 1 0.500231645013013 0.793664336204528 0.999536709973974 hm5C_site_7297 DeepMRMD:0.793664336204528;iRNA_m5C:0.999536709973974 7298 chr3 11598304 11598304 1 + C T rs73812470 11598318 + 11598298 11598338 41 GAATGCCAAAGCTTGGAAGCCCAGTACAGTGGGAGTGAAAT GAATGCTAAAGCTTGGAAGCCCAGTACAGTGGGAGTGAAAT < 41bp 1 0.140052516737803 1 0.119079411029816 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATG7;VGLL4 ENSG00000144560;ENSG00000197548 UTR3 Human other chr3:11598318 chr3:11598304 . . 0 7 hm5C_associated_SNPs_4265 0 0 1 0 0 unknown 1 0.500231642434029 1 0.999536715131943 hm5C_site_7298 DeepMRMD:1;iRNA_m5C:0.999536715131943 7299 chr3 11598330 11598330 1 + G C rs567008333 11598318 + 11598298 11598338 41 GAATGCCAAAGCTTGGAAGCCCAGTACAGTGGGAGTGAAAT GAATGCCAAAGCTTGGAAGCCCAGTACAGTGGCAGTGAAAT < 41bp 1 0.151248901333372 1 0.0952193737030029 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATG7;VGLL4 ENSG00000144560;ENSG00000197548 UTR3 Human other chr3:11598318 chr3:11598330 . . 0 33 hm5C_associated_SNPs_4266 0 0 0 0 0 unknown 1 0.500218884755846 1 0.999562230488308 hm5C_site_7299 DeepMRMD:1;iRNA_m5C:0.999562230488308 7300 chr3 12531407 12531407 1 + A G rs77258715 12531390 + 12531370 12531410 41 CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTC CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAGTTC < 41bp 1 0.326016168784584 1 0.263193994760513 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12531390 chr3:12531407 synonymous SNV . 0 38 hm5C_associated_SNPs_4267 1 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_7300 DeepMRMD:1;iRNA_m5C:0.999536712157814 not specified not specified 7301 chr3 12574468 12574468 1 + G A rs569680467 12574481 + 12574461 12574501 41 CTCTGGCGTCAGTCTTTTCCCTCATCCACTCACTGGGGAGA CTCTGGCATCAGTCTTTTCCCTCATCCACTCACTGGGGAGA < 41bp 1 0.226986415600732 1 0.145525962114334 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TSEN2 ENSG00000154743 UTR3 Human protein_coding chr3:12574481 chr3:12574468 . . 0 8 hm5C_associated_SNPs_4268 0 0 1 0 0 Nucleus 1 0.500231643926587 1 0.999536712146826 hm5C_site_7301 DeepMRMD:1;iRNA_m5C:0.999536712146826 7302 chr3 13547385 13547385 1 + C T rs181768386 13547400 + 13547380 13547420 41 CCACCCCTGCTAGCCGGCAGCTGTGGCCCTGATCAAATCAG CCACCTCTGCTAGCCGGCAGCTGTGGCCCTGATCAAATCAG < 41bp 1 0.535849822709066 1 0.477193117141724 experiment 0.928300354581868 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HDAC11 ENSG00000163517 UTR3 Human protein_coding chr3:13547400 chr3:13547385 . . 0 6 hm5C_associated_SNPs_4269 0 0 0 0 0 Cytosol 1 0.500231966545656 1 0.999536066908689 hm5C_site_7302 DeepMRMD:1;iRNA_m5C:0.999536066908689 7303 chr3 14183951 14183951 1 + G A rs559809675 14183965 + 14183945 14183985 41 ATCTTTGTAGTGTGTGGGATCTCTGAAGGCCCTATTTAAGT ATCTTTATAGTGTGTGGGATCTCTGAAGGCCCTATTTAAGT < 41bp 1 0.300510393463335 1 0.22804394364357 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM43 ENSG00000170876 UTR3 Human protein_coding chr3:14183965 chr3:14183951 . . 0 7 hm5C_associated_SNPs_4270 1 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7303 DeepMRMD:1;iRNA_m5C:0.999536712157815 Cardiomyopathy, ARVC Cardiomyopathy, ARVC 7304 chr3 14184719 14184719 1 + T C rs10468 14184725 + 14184705 14184745 41 ATTCAGAAACCGTTTTGTGCCTGCTGGGAGTAATTCCTTTA ATTCAGAAACCGTTCTGTGCCTGCTGGGAGTAATTCCTTTA < 41bp 1 0.557516844888741 1 0.0776461362838745 experiment 0.884966310222517 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM43 ENSG00000170876 UTR3 Human protein_coding chr3:14184725 chr3:14184719 . . 0 15 hm5C_associated_SNPs_4271 2 0 1 5 0 Ribosome 1 0.500231643920592 1 0.999536712158815 hm5C_site_7304 DeepMRMD:1;iRNA_m5C:0.999536712158815 Xeroderma pigmentosum Xeroderma pigmentosum 7305 chr3 14487265 14487265 1 + C T rs2228585 14487269 + 14487249 14487289 41 TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTTGGAG TTTTCCTGTTTGGGAGTGGCCTGCCTGTGTTTTTCTTGGAG < 41bp 1 0.360936050271627 1 0.188533633947372 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487269 chr3:14487265 synonymous SNV . 0 17 hm5C_associated_SNPs_4272 0 0 1 1 2 Nucleus 1 0.500231643921111 1 0.999536712157777 hm5C_site_7305 DeepMRMD:1;iRNA_m5C:0.999536712157777 7306 chr3 14528784 14528784 1 + G T rs35510912 14528799 + 14528779 14528819 41 ACACAGGCAGACCAAGTCCCCAGGCCCCGCCTGGAAGGAAG ACACATGCAGACCAAGTCCCCAGGCCCCGCCTGGAAGGAAG < 41bp 1 0.483390025520668 1 0.42361307144165 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC6A6 ENSG00000131389 UTR3 Human protein_coding chr3:14528799 chr3:14528784 . . 0 6 hm5C_associated_SNPs_4273 0 0 0 0 0 Nucleus 1 0.500231638338619 1 0.999536723322762 hm5C_site_7306 DeepMRMD:1;iRNA_m5C:0.999536723322762 7307 chr3 14712647 14712647 1 + A C rs139802337 14712656 + 14712636 14712676 41 CAAGCCCCCACAGTTACTTTCAAAACTCTGGATGACATGAT CAAGCCCCCACCGTTACTTTCAAAACTCTGGATGACATGAT < 41bp 1 0.480841696411489 1 0.480436950922012 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14712656 chr3:14712647 synonymous SNV . 0 12 hm5C_associated_SNPs_4274 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7307 DeepMRMD:1;iRNA_m5C:0.999536712157815 7308 chr3 14989285 14989285 1 + C T rs186068713 14989296 + 14989276 14989316 41 GCGAGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACC GCGAGCCCGTGGCCCCCGGGCTCCCGCCATCCGCCGACACC < 41bp 1 0.402286754678638 1 0.0527162253856659 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989296 chr3:14989285 . . 0 10 hm5C_associated_SNPs_4275 0 0 1 0 0 unknown 1 0.500231643926092 1 0.999536712147815 hm5C_site_7308 DeepMRMD:1;iRNA_m5C:0.999536712147815 7309 chr3 14989285 14989285 1 + C T rs186068713 14989298 + 14989278 14989318 41 GAGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCGG GAGCCCGTGGCCCCCGGGCTCCCGCCATCCGCCGACACCGG < 41bp 1 0.451323353091271 1 0.126145571470261 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989298 chr3:14989285 . . 0 8 hm5C_associated_SNPs_4276 0 0 1 0 0 unknown 1 0.500231643953472 1 0.999536712093055 hm5C_site_7309 DeepMRMD:1;iRNA_m5C:0.999536712093055 7310 chr3 14989285 14989285 1 + C T rs186068713 14989299 + 14989279 14989319 41 AGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCGGG AGCCCGTGGCCCCCGGGCTCCCGCCATCCGCCGACACCGGG < 41bp 1 0.357792714262295 1 0.127006679773331 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989299 chr3:14989285 . . 0 7 hm5C_associated_SNPs_4277 0 0 1 0 0 unknown 1 0.500231643922994 1 0.999536712154012 hm5C_site_7310 DeepMRMD:1;iRNA_m5C:0.999536712154012 7311 chr3 14989286 14989286 1 + G A rs547567795 14989296 + 14989276 14989316 41 GCGAGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACC GCGAGCCCGCAGCCCCCGGGCTCCCGCCATCCGCCGACACC < 41bp 1 0.36603865428463 1 0.0621410608291626 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989296 chr3:14989286 . . 0 11 hm5C_associated_SNPs_4278 0 0 1 0 0 unknown 1 0.500231643952713 1 0.999536712094574 hm5C_site_7311 DeepMRMD:1;iRNA_m5C:0.999536712094574 7312 chr3 14989286 14989286 1 + G A rs547567795 14989298 + 14989278 14989318 41 GAGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCGG GAGCCCGCAGCCCCCGGGCTCCCGCCATCCGCCGACACCGG < 41bp 1 0.378632411301051 1 0.101892471313477 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989298 chr3:14989286 . . 0 9 hm5C_associated_SNPs_4279 0 0 1 0 0 unknown 1 0.50023164392113 1 0.999536712157741 hm5C_site_7312 DeepMRMD:1;iRNA_m5C:0.999536712157741 7313 chr3 14989286 14989286 1 + G A rs547567795 14989299 + 14989279 14989319 41 AGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCGGG AGCCCGCAGCCCCCGGGCTCCCGCCATCCGCCGACACCGGG < 41bp 1 0.350935357339004 1 0.156432926654816 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989299 chr3:14989286 . . 0 8 hm5C_associated_SNPs_4280 0 0 1 0 0 unknown 1 0.500231643922991 1 0.999536712154018 hm5C_site_7313 DeepMRMD:1;iRNA_m5C:0.999536712154018 7314 chr3 14989310 14989310 1 + C A rs564563191 14989296 + 14989276 14989316 41 GCGAGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACC GCGAGCCCGCGGCCCCCGGGCTCCCGCCATCCGCAGACACC < 41bp 1 0.344822372865134 1 0.0377061069011688 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989296 chr3:14989310 . . 0 35 hm5C_associated_SNPs_4281 0 0 1 0 0 unknown 1 0.500231643950463 1 0.999536712099073 hm5C_site_7314 DeepMRMD:1;iRNA_m5C:0.999536712099073 7315 chr3 14989310 14989310 1 + C A rs564563191 14989298 + 14989278 14989318 41 GAGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCGG GAGCCCGCGGCCCCCGGGCTCCCGCCATCCGCAGACACCGG < 41bp 1 0.405756522412861 1 0.0952959656715393 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989298 chr3:14989310 . . 0 33 hm5C_associated_SNPs_4282 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_7315 DeepMRMD:1;iRNA_m5C:0.999536712157815 7316 chr3 14989310 14989310 1 + C A rs564563191 14989299 + 14989279 14989319 41 AGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCGGG AGCCCGCGGCCCCCGGGCTCCCGCCATCCGCAGACACCGGG < 41bp 1 0.392267805996529 1 0.168351113796234 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989299 chr3:14989310 . . 0 32 hm5C_associated_SNPs_4283 0 0 1 0 0 unknown 1 0.500231643921786 1 0.999536712156428 hm5C_site_7316 DeepMRMD:1;iRNA_m5C:0.999536712156428 7317 chr3 14989317 14989317 1 + G A rs533463836 14989298 + 14989278 14989318 41 GAGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCGG GAGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCAG < 41bp 1 0.441297461658637 1 0.161542236804962 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989298 chr3:14989317 . . 0 40 hm5C_associated_SNPs_4285 0 0 1 0 1 unknown 1 0.500231643921089 1 0.999536712157821 hm5C_site_7317 DeepMRMD:1;iRNA_m5C:0.999536712157821 7318 chr3 14989317 14989317 1 + G A rs533463836 14989299 + 14989279 14989319 41 AGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCGGG AGCCCGCGGCCCCCGGGCTCCCGCCATCCGCCGACACCAGG < 41bp 1 0.36229014053898 1 0.166013777256012 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989299 chr3:14989317 . . 0 39 hm5C_associated_SNPs_4286 0 0 1 0 1 unknown 1 0.500231671179652 1 0.999536657640695 hm5C_site_7318 DeepMRMD:1;iRNA_m5C:0.999536657640695 7319 chr3 14989317 14989317 1 + G A rs533463836 14989322 + 14989302 14989342 41 CCATCCGCCGACACCGGGAGCCCGGGCTCCCCGCGCCCTGC CCATCCGCCGACACCAGGAGCCCGGGCTCCCCGCGCCCTGC < 41bp 1 0.698013977381157 1 0.346778213977814 experiment 0.603972045237686 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989322 chr3:14989317 . . 0 16 hm5C_associated_SNPs_4287 0 0 1 0 1 unknown 1 0.500231643920444 1 0.999536712159112 hm5C_site_7319 DeepMRMD:1;iRNA_m5C:0.999536712159112 7320 chr3 15247872 15247872 1 + C T rs562855482 15247876 + 15247856 15247896 41 GCGAGCTCTCCTCCACCGTCCAAAGTAAACTTTGCCGCTCC GCGAGCTCTCCTCCACTGTCCAAAGTAAACTTTGCCGCTCC < 41bp 1 0.693426744582599 1 0.729309856891632 experiment 0.613146510834801 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control CAPN7 ENSG00000131375 UTR5 Human protein_coding chr3:15247876 chr3:15247872 . . 0 17 hm5C_associated_SNPs_4289 0 0 1 0 0 Cytosol 1 0.500231643921092 0.541380286216736 0.999536712157815 hm5C_site_7320 DeepMRMD:0.541380286216736;iRNA_m5C:0.999536712157815 7321 chr3 15297570 15297570 1 + C A rs140402906 15297574 - 15297554 15297594 41 GATTCATCCTGGGCCCTGGCCGATGTGCATATCAACATTTA GATTCATCCTGGGCCCTGGCCGATTTGCATATCAACATTTA < 41bp 1 0.13577204427386 1 0.0441830456256866 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP5-AS1 ENSG00000224660 ncRNA_exonic Human antisense chr3:15297574 chr3:15297570 . . 0 25 hm5C_associated_SNPs_4290 0 0 1 5 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_7321 DeepMRMD:1;iRNA_m5C:0.999536712157815 7322 chr3 16312564 16312564 1 + C T rs842259 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTCAGCACTTTGCGCCATCTTACTCTAACCAGGTGA < 41bp 1 0.0924857831881103 1 0.0683153569698334 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312564 synonymous SNV . 0 23 hm5C_associated_SNPs_4291 0 0 1 0 1 Ribosome 1 0.500230044103355 1 0.99953991179329 hm5C_site_7322 DeepMRMD:1;iRNA_m5C:0.99953991179329 7323 chr3 17056271 17056271 1 + G A rs61755446 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCA < 41bp 1 0.53046545048774 1 0.131004124879837 experiment 0.939069099024521 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056271 synonymous SNV . 0 41 hm5C_associated_SNPs_4292 0 0 0 0 1 nucleus 1 0.500231453654443 1 0.999537092691115 hm5C_site_7323 DeepMRMD:1;iRNA_m5C:0.999537092691115 7324 chr3 20019806 20019806 1 + C T rs200242114 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GTACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.465192667060081 1 0.120863735675812 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019806 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_4293 0 0 1 2 2 Ribosome 1 0.500231644748876 1 0.999536710502248 hm5C_site_7324 DeepMRMD:1;iRNA_m5C:0.999536710502248 7325 chr3 23958648 23958648 1 + C T rs34200392 23958644 + 23958624 23958664 41 GGAGTACAGCTCTTTCCTTTCCGTCTGGCGGCAGCCATCAG GGAGTACAGCTCTTTCCTTTCCGTTTGGCGGCAGCCATCAG < 41bp 1 0.381460523596803 1 0.0795766413211823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR5 Human protein_coding chr3:23958644 chr3:23958648 . . 0 25 hm5C_associated_SNPs_4294 0 0 1 0 2 Cytosol 1 0.500231643914314 1 0.999536712171373 hm5C_site_7325 DeepMRMD:1;iRNA_m5C:0.999536712171373 7326 chr3 23960001 23960001 1 + C T rs35608037 23959994 + 23959974 23960014 41 ACGCCCAGTTCCTAAGGGTGCAACTTACGGCAAGCCTGTCC ACGCCCAGTTCCTAAGGGTGCAACTTATGGCAAGCCTGTCC < 41bp 1 0.387146144635767 1 0.0788879692554474 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23959994 chr3:23960001 synonymous SNV . 0 28 hm5C_associated_SNPs_4295 0 0 1 0 3 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_7326 DeepMRMD:1;iRNA_m5C:0.999536712157812 7327 chr3 23963182 23963182 1 + C T rs576117403 23963186 + 23963166 23963206 41 AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTAC AGCAATTCTTCTGCCTTGGCCTCCCAAATAGCCAGGACTAC < 41bp 1 0.309281618402844 1 0.191103249788284 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963186 chr3:23963182 . . 0 17 hm5C_associated_SNPs_4296 0 0 0 0 1 Cytosol 1 0.50023164372508 1 0.99953671254984 hm5C_site_7327 DeepMRMD:1;iRNA_m5C:0.99953671254984 7328 chr3 23963182 23963182 1 + C T rs576117403 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTTGGCCTCCCAAATAGCCAGGACTACAGG < 41bp 1 0.356831611876595 1 0.32557687163353 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963182 . . 0 14 hm5C_associated_SNPs_4297 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7328 DeepMRMD:1;iRNA_m5C:0.999536712157815 7329 chr3 23963183 23963183 1 + G A rs9755750 23963186 + 23963166 23963206 41 AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTAC AGCAATTCTTCTGCCTCAGCCTCCCAAATAGCCAGGACTAC < 41bp 1 0.334040439493585 1 0.449836760759354 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963186 chr3:23963183 . . 0 18 hm5C_associated_SNPs_4298 0 0 0 0 1 Cytosol 1 0.500231643725108 1 0.999536712549784 hm5C_site_7329 DeepMRMD:1;iRNA_m5C:0.999536712549784 7330 chr3 23963183 23963183 1 + G A rs9755750 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTCAGCCTCCCAAATAGCCAGGACTACAGG < 41bp 1 0.359061572648936 1 0.329344213008881 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963183 . . 0 15 hm5C_associated_SNPs_4299 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7330 DeepMRMD:1;iRNA_m5C:0.999536712157815 7331 chr3 23963201 23963201 1 + G A rs368292611 23963186 + 23963166 23963206 41 AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTAC AGCAATTCTTCTGCCTCGGCCTCCCAAATAGCCAGAACTAC < 41bp 1 0.241877585033707 1 0.240860432386398 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963186 chr3:23963201 . . 0 36 hm5C_associated_SNPs_4300 0 0 0 4 0 Cytosol 1 0.500231638265175 1 0.99953672346965 hm5C_site_7331 DeepMRMD:1;iRNA_m5C:0.99953672346965 7332 chr3 23963201 23963201 1 + G A rs368292611 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGAACTACAGG < 41bp 1 0.369167019391489 1 0.582080006599426 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963201 . . 0 33 hm5C_associated_SNPs_4301 0 0 0 4 0 Cytosol 1 0.500231643921092 0.835839986801148 0.999536712157815 hm5C_site_7332 DeepMRMD:0.835839986801148;iRNA_m5C:0.999536712157815 7333 chr3 23963209 23963209 1 + G A rs372263565 23963189 + 23963169 23963209 41 AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGG AATTCTTCTGCCTCGGCCTCCCAAATAGCCAGGACTACAGA < 41bp 1 0.351629638504229 1 0.4553182721138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 UTR3 Human protein_coding chr3:23963189 chr3:23963209 . . 0 41 hm5C_associated_SNPs_4302 0 0 0 4 0 Cytosol 1 0.500231643921084 1 0.999536712157832 hm5C_site_7333 DeepMRMD:1;iRNA_m5C:0.999536712157832 7334 chr3 23986820 23986820 1 + G A rs184000561 23986826 + 23986806 23986846 41 GGCTGCAGGAAGCCGCCGCGCCGCCGCTTTTGTTGTCAGGG GGCTGCAGGAAGCCACCGCGCCGCCGCTTTTGTTGTCAGGG < 41bp 1 0.392750883823701 1 0.404692828655243 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NR1D2 ENSG00000174738 UTR5 Human protein_coding chr3:23986826 chr3:23986820 . . 0 15 hm5C_associated_SNPs_4303 0 0 1 0 0 Ribosome 1 0.500231643921085 1 0.999536712157831 hm5C_site_7334 DeepMRMD:1;iRNA_m5C:0.999536712157831 7335 chr3 31674561 31674561 1 + A G rs140420950 31674578 + 31674558 31674598 41 AGCACCTGATAACAGGGAGACATTAGATCACAAACCTCGAG AGCGCCTGATAACAGGGAGACATTAGATCACAAACCTCGAG < 41bp 1 0.232034257422413 1 0.233586996793747 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STT3B ENSG00000163527 CDS Human protein_coding chr3:31674578 chr3:31674561 synonymous SNV . 0 4 hm5C_associated_SNPs_4304 1 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7335 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 7336 chr3 32209560 32209560 1 + G A rs373602669 32209573 + 32209553 32209593 41 GTTTTGCGTATTTTCATCTGCATTCAGCTTCTTACTCTGGG GTTTTGCATATTTTCATCTGCATTCAGCTTCTTACTCTGGG < 41bp 1 0.0522453332000827 1 0.0291353166103363 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD1L ENSG00000152642 UTR3 Human protein_coding chr3:32209573 chr3:32209560 . . 0 8 hm5C_associated_SNPs_4305 1 0 1 0 0 Cytosol 1 0.500231646425643 1 0.999536707148714 hm5C_site_7336 DeepMRMD:1;iRNA_m5C:0.999536707148714 Brugada syndrome Brugada syndrome 7337 chr3 32280390 32280390 1 + G A rs28379932 32280370 + 32280350 32280390 41 CGCGCGGGCCGCGCTCCCCTCCCCCGCGCCTGTGTCCCCAG CGCGCGGGCCGCGCTCCCCTCCCCCGCGCCTGTGTCCCCAA < 41bp 1 0.472010361106731 1 0.243815898895264 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CMTM8 ENSG00000170293 UTR5 Human protein_coding chr3:32280370 chr3:32280390 . . 0 41 hm5C_associated_SNPs_4306 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_7337 DeepMRMD:1;iRNA_m5C:0.999536712157813 7338 chr3 32433353 32433353 1 + C A rs572660378 32433362 + 32433342 32433382 41 TGTATCTGGCCCCTGGGCAGCTGCCCGGGGAGGCGGCCAGC TGTATCTGGCCACTGGGCAGCTGCCCGGGGAGGCGGCCAGC < 41bp 1 0.696887274371821 1 0.21127912402153 experiment 0.606225451256359 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CMTM7 ENSG00000153551 UTR5 Human protein_coding chr3:32433362 chr3:32433353 . . 0 12 hm5C_associated_SNPs_4308 0 0 1 0 0 Ribosome 1 0.500231643929238 1 0.999536712141524 hm5C_site_7338 DeepMRMD:1;iRNA_m5C:0.999536712141524 7339 chr3 32495950 32495950 1 + G A rs114577010 32495966 + 32495946 32495986 41 TTCCGGGGAGAACATCCCTCCCATTCTGGGAAAGGAAAGCA TTCCAGGGAGAACATCCCTCCCATTCTGGGAAAGGAAAGCA < 41bp 1 0.103751265555295 1 0.0538241267204285 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32495966 chr3:32495950 nonsynonymous SNV 0.000 1 5 hm5C_associated_SNPs_4309 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7339 DeepMRMD:1;iRNA_m5C:0.999536712157815 7340 chr3 33155563 33155563 1 + G A rs534679571 33155562 + 33155542 33155582 41 CCTTCCTTCCTTCCTTTCGCCGGGCGCGATGGAGCCGGGGC CCTTCCTTCCTTCCTTTCGCCAGGCGCGATGGAGCCGGGGC < 41bp 1 0.672405225422893 1 0.843590199947357 experiment 0.655189549154215 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CRTAP ENSG00000170275 UTR5 Human protein_coding chr3:33155562 chr3:33155563 . . 0 22 hm5C_associated_SNPs_4310 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.312819600105286 0.999536712157815 hm5C_site_7340 DeepMRMD:0.312819600105286;iRNA_m5C:0.999536712157815 7341 chr3 33155563 33155563 1 + G A rs534679571 33155568 + 33155548 33155588 41 TTCCTTCCTTTCGCCGGGCGCGATGGAGCCGGGGCGCCGGG TTCCTTCCTTTCGCCAGGCGCGATGGAGCCGGGGCGCCGGG < 41bp 1 0.609605624425131 1 0.495652139186859 experiment 0.780788751149738 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CRTAP ENSG00000170275 UTR5 Human protein_coding chr3:33155568 chr3:33155563 . . 0 16 hm5C_associated_SNPs_4311 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_7341 DeepMRMD:1;iRNA_m5C:0.999536712157815 7342 chr3 33183947 33183947 1 + G A rs145383822 33183934 + 33183914 33183954 41 CTCTTGGAACTGGAGGAGACCAGCTAGCCCACAGCAACCAA CTCTTGGAACTGGAGGAGACCAGCTAGCCCACAACAACCAA < 41bp 1 0.390905819395777 1 0.14238053560257 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTAP ENSG00000170275 UTR3 Human protein_coding chr3:33183934 chr3:33183947 . . 0 34 hm5C_associated_SNPs_4312 0 0 1 1 1 Endoplasmic reticulum 1 0.500230617827741 1 0.999538764344517 hm5C_site_7342 DeepMRMD:1;iRNA_m5C:0.999538764344517 7343 chr3 33883492 33883492 1 + G A rs76608858 33883497 + 33883477 33883517 41 GTGATTGAACAGGGAGGCATCCAGACTGTTGATCAGTTGAT GTGATTGAACAGGGAAGCATCCAGACTGTTGATCAGTTGAT < 41bp 1 0.548193900511669 1 0.147662401199341 experiment 0.903612198976661 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33883497 chr3:33883492 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_4313 0 0 0 0 1 Nucleus 1 0.50023164414931 1 0.99953671170138 hm5C_site_7343 DeepMRMD:1;iRNA_m5C:0.99953671170138 7344 chr3 33906737 33906737 1 + T C rs74450908 33906745 + 33906725 33906765 41 TTTCTTATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTC TTTCTTATAGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTC < 41bp 1 0.384144591186833 1 0.150980204343796 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906745 chr3:33906737 synonymous SNV . 0 13 hm5C_associated_SNPs_4314 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7344 DeepMRMD:1;iRNA_m5C:0.999536712157815 7345 chr3 33906737 33906737 1 + T C rs74450908 33906746 + 33906726 33906766 41 TTCTTATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCC TTCTTATAGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCC < 41bp 1 0.122735272343366 1 0.156276643276215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906746 chr3:33906737 synonymous SNV . 0 12 hm5C_associated_SNPs_4315 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7345 DeepMRMD:1;iRNA_m5C:0.999536712157815 7346 chr3 33906737 33906737 1 + T C rs74450908 33906747 + 33906727 33906767 41 TCTTATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCA TCTTATAGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCCA < 41bp 1 0.342337913384565 1 0.17132967710495 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906747 chr3:33906737 synonymous SNV . 0 11 hm5C_associated_SNPs_4316 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7346 DeepMRMD:1;iRNA_m5C:0.999536712157815 7347 chr3 33906737 33906737 1 + T C rs74450908 33906750 + 33906730 33906770 41 TATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCA TATAGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCA < 41bp 1 0.126365842217217 1 0.141971617937088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906750 chr3:33906737 synonymous SNV . 0 8 hm5C_associated_SNPs_4317 0 0 1 0 1 Nucleus 1 0.50023164557678 1 0.99953670884644 hm5C_site_7347 DeepMRMD:1;iRNA_m5C:0.99953670884644 7348 chr3 33906737 33906737 1 + T C rs74450908 33906751 + 33906731 33906771 41 ATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCAC ATAGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCAC < 41bp 1 0.609126175470879 1 0.316900044679642 experiment 0.781747649058242 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906751 chr3:33906737 synonymous SNV . 0 7 hm5C_associated_SNPs_4318 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7348 DeepMRMD:1;iRNA_m5C:0.999536712157815 7349 chr3 33906737 33906737 1 + T C rs74450908 33906752 + 33906732 33906772 41 TAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACC TAGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACC < 41bp 1 0.194717135440618 1 0.236248970031738 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906752 chr3:33906737 synonymous SNV . 0 6 hm5C_associated_SNPs_4319 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7349 DeepMRMD:1;iRNA_m5C:0.999536712157815 7350 chr3 33906737 33906737 1 + T C rs74450908 33906753 + 33906733 33906773 41 AGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACCT AGCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACCT < 41bp 1 0.188383022399368 1 0.183061480522156 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906753 chr3:33906737 synonymous SNV . 0 5 hm5C_associated_SNPs_4320 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7350 DeepMRMD:1;iRNA_m5C:0.999536712157815 7351 chr3 33906737 33906737 1 + T C rs74450908 33906754 + 33906734 33906774 41 GCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACCTG GCCCACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACCTG < 41bp 1 0.406783764399216 1 0.319036662578583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906754 chr3:33906737 synonymous SNV . 0 4 hm5C_associated_SNPs_4321 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7351 DeepMRMD:1;iRNA_m5C:0.999536712157815 7352 chr3 37090070 37090070 1 + G T rs1800146 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATGTGCCCCCTTTGGAGGGACTTCCTATCTTCATTCTTCGA < 41bp 1 0.158058012065076 1 0.0351168215274811 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090070 synonymous SNV . 0 23 hm5C_associated_SNPs_4322 4 0 1 0 2 Cytosol 1 0.500231643918733 1 0.999536712162533 hm5C_site_7352 DeepMRMD:1;iRNA_m5C:0.999536712162533 Lynch syndrome Lynch syndrome 7353 chr3 37090074 37090074 1 + A G rs55907433 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATGTGCCCCCTTTGGAGGGACTGCCTGTCTTCATTCTTCGA < 41bp 1 0.365634652701247 1 0.0487358272075653 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090074 nonsynonymous SNV 0.999 2 27 hm5C_associated_SNPs_4323 5 0 1 0 2 Cytosol 1 0.500231643967843 1 0.999536712064315 hm5C_site_7353 DeepMRMD:1;iRNA_m5C:0.999536712064315 not provided not provided 7354 chr3 37336478 37336478 1 + A G rs202188013 37336473 + 37336453 37336493 41 ATCATTTTATGTTTTAGGAGCTCCAAATGGACCAGCAGGCA ATCATTTTATGTTTTAGGAGCTCCAGATGGACCAGCAGGCA < 41bp 1 0.362350181167529 1 0.609057486057281 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37336473 chr3:37336478 synonymous SNV . 0 26 hm5C_associated_SNPs_4324 0 0 1 0 2 Cytosol 1 0.500231643921092 0.781885027885438 0.999536712157815 hm5C_site_7354 DeepMRMD:0.781885027885438;iRNA_m5C:0.999536712157815 7355 chr3 37367159 37367159 1 + A C rs113184679 37367140 + 37367120 37367160 41 CTAGGATTTCTCATTGTCAGCACCGTACAACTAAAGTTAAG CTAGGATTTCTCATTGTCAGCACCGTACAACTAAAGTTACG < 41bp 1 0.243593644414961 1 0.0771792829036713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367140 chr3:37367159 nonsynonymous SNV 0.395 2 40 hm5C_associated_SNPs_4325 0 0 1 0 0 Cytosol 1 0.500231643086295 1 0.99953671382741 hm5C_site_7355 DeepMRMD:1;iRNA_m5C:0.99953671382741 7356 chr3 37367159 37367159 1 + A C rs113184679 37367142 + 37367122 37367162 41 AGGATTTCTCATTGTCAGCACCGTACAACTAAAGTTAAGGA AGGATTTCTCATTGTCAGCACCGTACAACTAAAGTTACGGA < 41bp 1 0.0491907963453533 1 0.147824764251709 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367142 chr3:37367159 nonsynonymous SNV 0.395 2 38 hm5C_associated_SNPs_4326 0 0 1 0 0 Cytosol 1 0.500231643845866 1 0.999536712308267 hm5C_site_7356 DeepMRMD:1;iRNA_m5C:0.999536712308267 7357 chr3 37367159 37367159 1 + A C rs113184679 37367147 + 37367127 37367167 41 TTCTCATTGTCAGCACCGTACAACTAAAGTTAAGGAGGCAC TTCTCATTGTCAGCACCGTACAACTAAAGTTACGGAGGCAC < 41bp 1 0.13089126135015 1 0.0814597606658936 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367147 chr3:37367159 nonsynonymous SNV 0.395 2 33 hm5C_associated_SNPs_4327 0 0 1 0 0 Cytosol 1 0.500231643923094 1 0.999536712153812 hm5C_site_7357 DeepMRMD:1;iRNA_m5C:0.999536712153812 7358 chr3 37367159 37367159 1 + A C rs113184679 37367150 + 37367130 37367170 41 TCATTGTCAGCACCGTACAACTAAAGTTAAGGAGGCACTGT TCATTGTCAGCACCGTACAACTAAAGTTACGGAGGCACTGT < 41bp 1 0.300740094032057 1 0.121204018592834 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367150 chr3:37367159 nonsynonymous SNV 0.395 2 30 hm5C_associated_SNPs_4328 0 0 1 0 0 Cytosol 1 0.500231643916357 1 0.999536712167286 hm5C_site_7358 DeepMRMD:1;iRNA_m5C:0.999536712167286 7359 chr3 37367159 37367159 1 + A C rs113184679 37367165 + 37367145 37367185 41 TACAACTAAAGTTAAGGAGGCACTGTTAATTAAAACTTGCA TACAACTAAAGTTACGGAGGCACTGTTAATTAAAACTTGCA < 41bp 1 0.0748248255705317 1 0.174722135066986 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367165 chr3:37367159 nonsynonymous SNV 0.395 2 15 hm5C_associated_SNPs_4329 0 0 1 0 0 Cytosol 1 0.500231643919948 1 0.999536712160104 hm5C_site_7359 DeepMRMD:1;iRNA_m5C:0.999536712160104 7360 chr3 37367159 37367159 1 + A C rs113184679 37367167 + 37367147 37367187 41 CAACTAAAGTTAAGGAGGCACTGTTAATTAAAACTTGCACA CAACTAAAGTTACGGAGGCACTGTTAATTAAAACTTGCACA < 41bp 1 0.097765009165558 1 0.0587469339370728 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367167 chr3:37367159 nonsynonymous SNV 0.395 2 13 hm5C_associated_SNPs_4330 0 0 1 0 0 Cytosol 1 0.500231643453548 1 0.999536713092904 hm5C_site_7360 DeepMRMD:1;iRNA_m5C:0.999536713092904 7361 chr3 38183379 38183379 1 + C G rs56269210 38183391 + 38183371 38183411 41 CAAGGAGACCCCACCTTGAGCCTTATTTCCTAATGGGTCCA CAAGGAGAGCCCACCTTGAGCCTTATTTCCTAATGGGTCCA < 41bp 1 0.151038898913906 1 0.0391299724578857 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYD88 ENSG00000172936 UTR3 Human protein_coding chr3:38183391 chr3:38183379 . . 0 9 hm5C_associated_SNPs_4332 0 0 1 0 0 Ribosome 1 0.500231643983866 1 0.999536712032267 hm5C_site_7361 DeepMRMD:1;iRNA_m5C:0.999536712032267 7362 chr3 38524742 38524742 1 + C T rs1046048 38524735 + 38524715 38524755 41 GGTGTCCCTGATTCGGAGGTCGGTCAACGGCACTACCTCGG GGTGTCCCTGATTCGGAGGTCGGTCAATGGCACTACCTCGG < 41bp 1 0.232187464498895 1 0.324655801057816 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38524735 chr3:38524742 synonymous SNV . 0 28 hm5C_associated_SNPs_4333 2 0 1 0 0 Ribosome 1 0.500231643921031 1 0.999536712157939 hm5C_site_7362 DeepMRMD:1;iRNA_m5C:0.999536712157939 not specified not specified 7363 chr3 39452577 39452577 1 + A G rs188790952 39452562 + 39452542 39452582 41 TCCTGTGCACATTGTTAGAGCTTGGAGTTGAGGCTACTGAC TCCTGTGCACATTGTTAGAGCTTGGAGTTGAGGCTGCTGAC < 41bp 1 0.320550997991852 1 0.319531857967377 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA62 ENSG00000202363 ncRNA_exonic Human snoRNA chr3:39452562 chr3:39452577 . . 0 36 hm5C_associated_SNPs_4335 0 0 1 0 0 unknown 1 0.500231643921138 1 0.999536712157724 hm5C_site_7363 DeepMRMD:1;iRNA_m5C:0.999536712157724 7364 chr3 39452676 39452676 1 + G C rs139033405 39452660 + 39452640 39452680 41 ACACCACAAGGGTCTCTGGCCCAATGAGTGGAGTTTGATAG ACACCACAAGGGTCTCTGGCCCAATGAGTGGAGTTTCATAG < 41bp 1 0.0825082664366375 1 0.0682356357574463 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA62 ENSG00000202363 ncRNA_exonic Human snoRNA chr3:39452660 chr3:39452676 . . 0 37 hm5C_associated_SNPs_4337 0 0 1 1 0 unknown 1 0.500231585811225 1 0.999536828377551 hm5C_site_7364 DeepMRMD:1;iRNA_m5C:0.999536828377551 7365 chr3 39452676 39452676 1 + G C rs139033405 39452690 + 39452670 39452710 41 GAGTTTGATAGTAATTCTTGCTACAAGTATAACATTACTGC GAGTTTCATAGTAATTCTTGCTACAAGTATAACATTACTGC < 41bp 1 0.251580322075807 1 0.524475276470184 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA62 ENSG00000202363 ncRNA_exonic Human snoRNA chr3:39452690 chr3:39452676 . . 0 7 hm5C_associated_SNPs_4338 0 0 1 1 0 unknown 1 0.500231641003703 0.951049447059632 0.999536717992594 hm5C_site_7365 DeepMRMD:0.951049447059632;iRNA_m5C:0.999536717992594 7366 chr3 39452676 39452676 1 + G C rs139033405 39452693 + 39452673 39452713 41 TTTGATAGTAATTCTTGCTACAAGTATAACATTACTGCATG TTTCATAGTAATTCTTGCTACAAGTATAACATTACTGCATG < 41bp 1 0.326370630110404 1 0.36085045337677 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA62 ENSG00000202363 ncRNA_exonic Human snoRNA chr3:39452693 chr3:39452676 . . 0 4 hm5C_associated_SNPs_4339 0 0 1 1 0 unknown 1 0.500231685323745 1 0.999536629352511 hm5C_site_7366 DeepMRMD:1;iRNA_m5C:0.999536629352511 7367 chr3 40498845 40498845 1 + C T rs2276868 40498829 + 40498809 40498849 41 AGGGTTGGGCGGGTCTTCTTCCTTCTCGCCTAACGCCGCCA AGGGTTGGGCGGGTCTTCTTCCTTCTCGCCTAACGCTGCCA < 41bp 1 0.0679884081784402 1 0.069646418094635 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL14 ENSG00000188846 UTR5 Human protein_coding chr3:40498829 chr3:40498845 . . 0 37 hm5C_associated_SNPs_4340 0 0 1 0 1 Ribosome 1 0.500231643997033 1 0.999536712005934 hm5C_site_7367 DeepMRMD:1;iRNA_m5C:0.999536712005934 7368 chr3 40498920 40498920 1 + A T rs2276869 40498931 + 40498911 40498951 41 TCCGCTGGGAAGCTGAGGCGCCAAACGGCTCCCAGAGGGTC TCCGCTGGGTAGCTGAGGCGCCAAACGGCTCCCAGAGGGTC < 41bp 1 0.563750198513686 1 0.178496122360229 experiment 0.872499602972629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL14 ENSG00000188846 UTR5 Human protein_coding chr3:40498931 chr3:40498920 . . 0 10 hm5C_associated_SNPs_4341 0 0 1 0 1 Ribosome 1 0.500231643921442 1 0.999536712157115 hm5C_site_7368 DeepMRMD:1;iRNA_m5C:0.999536712157115 7369 chr3 40498920 40498920 1 + A T rs2276869 40498932 + 40498912 40498952 41 CCGCTGGGAAGCTGAGGCGCCAAACGGCTCCCAGAGGGTCC CCGCTGGGTAGCTGAGGCGCCAAACGGCTCCCAGAGGGTCC < 41bp 1 0.5195973118813 1 0.218872845172882 experiment 0.9608053762374 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL14 ENSG00000188846 UTR5 Human protein_coding chr3:40498932 chr3:40498920 . . 0 9 hm5C_associated_SNPs_4342 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7369 DeepMRMD:1;iRNA_m5C:0.999536712157815 7370 chr3 40498933 40498933 1 + A G rs4973904 40498931 + 40498911 40498951 41 TCCGCTGGGAAGCTGAGGCGCCAAACGGCTCCCAGAGGGTC TCCGCTGGGAAGCTGAGGCGCCGAACGGCTCCCAGAGGGTC < 41bp 1 0.655587590175306 1 0.259960770606995 experiment 0.688824819649387 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL14 ENSG00000188846 UTR5 Human protein_coding chr3:40498931 chr3:40498933 . . 0 23 hm5C_associated_SNPs_4343 0 0 1 0 1 Ribosome 1 0.500231643918796 1 0.999536712162407 hm5C_site_7370 DeepMRMD:1;iRNA_m5C:0.999536712162407 7371 chr3 40498933 40498933 1 + A G rs4973904 40498932 + 40498912 40498952 41 CCGCTGGGAAGCTGAGGCGCCAAACGGCTCCCAGAGGGTCC CCGCTGGGAAGCTGAGGCGCCGAACGGCTCCCAGAGGGTCC < 41bp 1 0.557139485586457 1 0.21683669090271 experiment 0.885721028827085 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL14 ENSG00000188846 UTR5 Human protein_coding chr3:40498932 chr3:40498933 . . 0 22 hm5C_associated_SNPs_4344 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7371 DeepMRMD:1;iRNA_m5C:0.999536712157815 7372 chr3 40499415 40499415 1 + C T rs181009417 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGCCGGGTGGTCTATGTCTCCTTTGGACCTCATGCCGGAAA < 41bp 1 0.403078742049718 1 0.0536520481109619 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499415 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_4345 0 0 1 0 1 Ribosome 1 0.500231643921108 1 0.999536712157784 hm5C_site_7372 DeepMRMD:1;iRNA_m5C:0.999536712157784 7373 chr3 40499445 40499445 1 + A G rs35187187 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAG < 41bp 1 0.408900064285162 1 0.0547160804271698 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499445 nonsynonymous SNV 0.910 0 41 hm5C_associated_SNPs_4346 0 0 1 0 1 Ribosome 1 0.500231643921099 1 0.999536712157802 hm5C_site_7373 DeepMRMD:1;iRNA_m5C:0.999536712157802 7374 chr3 40503478 40503478 1 + C A rs145682545 40503488 + 40503468 40503508 41 AAAGGCAGCTCTCCTGAAAGCTTCTCCCAAAAAAGCACCTG AAAGGCAGCTATCCTGAAAGCTTCTCCCAAAAAAGCACCTG < 41bp 1 0.226935534485088 1 0.159801542758942 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40503488 chr3:40503478 nonsynonymous SNV 0.997 0 11 hm5C_associated_SNPs_4347 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7374 DeepMRMD:1;iRNA_m5C:0.999536712157815 7375 chr3 40503506 40503506 1 + C T rs148931839 40503488 + 40503468 40503508 41 AAAGGCAGCTCTCCTGAAAGCTTCTCCCAAAAAAGCACCTG AAAGGCAGCTCTCCTGAAAGCTTCTCCCAAAAAAGCACTTG < 41bp 1 0.202316407239591 1 0.14392501115799 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40503488 chr3:40503506 nonsynonymous SNV 0.543 1 39 hm5C_associated_SNPs_4348 0 0 1 0 1 Ribosome 1 0.500231644155107 1 0.999536711689786 hm5C_site_7375 DeepMRMD:1;iRNA_m5C:0.999536711689786 7376 chr3 40574890 40574890 1 + C G rs184243754 40574873 + 40574853 40574893 41 AACACCTGACCTCAAGTGATCCGCCTGCCTTGGCCCCCCAA AACACCTGACCTCAAGTGATCCGCCTGCCTTGGCCCCGCAA < 41bp 1 0.255771039952342 1 0.337823390960693 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40574873 chr3:40574890 . . 0 38 hm5C_associated_SNPs_4349 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7376 DeepMRMD:1;iRNA_m5C:0.999536712157815 7377 chr3 40574890 40574890 1 + C G rs184243754 40574874 + 40574854 40574894 41 ACACCTGACCTCAAGTGATCCGCCTGCCTTGGCCCCCCAAA ACACCTGACCTCAAGTGATCCGCCTGCCTTGGCCCCGCAAA < 41bp 1 0.5288864196109 1 0.356612890958786 experiment 0.942227160778199 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40574874 chr3:40574890 . . 0 37 hm5C_associated_SNPs_4350 0 0 1 0 0 Nucleus 1 0.500231643921147 1 0.999536712157706 hm5C_site_7377 DeepMRMD:1;iRNA_m5C:0.999536712157706 7378 chr3 40574890 40574890 1 + C G rs184243754 40574876 + 40574856 40574896 41 ACCTGACCTCAAGTGATCCGCCTGCCTTGGCCCCCCAAAGT ACCTGACCTCAAGTGATCCGCCTGCCTTGGCCCCGCAAAGT < 41bp 1 0.1081125876601 1 0.124269425868988 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40574876 chr3:40574890 . . 0 35 hm5C_associated_SNPs_4351 0 0 1 0 0 Nucleus 1 0.500231638293667 1 0.999536723412667 hm5C_site_7378 DeepMRMD:1;iRNA_m5C:0.999536723412667 7379 chr3 40574890 40574890 1 + C G rs184243754 40574877 + 40574857 40574897 41 CCTGACCTCAAGTGATCCGCCTGCCTTGGCCCCCCAAAGTG CCTGACCTCAAGTGATCCGCCTGCCTTGGCCCCGCAAAGTG < 41bp 1 0.42839762394992 1 0.264772653579712 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40574877 chr3:40574890 . . 0 34 hm5C_associated_SNPs_4352 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7379 DeepMRMD:1;iRNA_m5C:0.999536712157815 7380 chr3 40574890 40574890 1 + C G rs184243754 40574880 + 40574860 40574900 41 GACCTCAAGTGATCCGCCTGCCTTGGCCCCCCAAAGTGCTG GACCTCAAGTGATCCGCCTGCCTTGGCCCCGCAAAGTGCTG < 41bp 1 0.0972934299301704 1 0.154568403959274 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40574880 chr3:40574890 . . 0 31 hm5C_associated_SNPs_4353 0 0 1 0 0 Nucleus 1 0.500231538903532 1 0.999536922192937 hm5C_site_7380 DeepMRMD:1;iRNA_m5C:0.999536922192937 7381 chr3 40574890 40574890 1 + C G rs184243754 40574881 + 40574861 40574901 41 ACCTCAAGTGATCCGCCTGCCTTGGCCCCCCAAAGTGCTGG ACCTCAAGTGATCCGCCTGCCTTGGCCCCGCAAAGTGCTGG < 41bp 1 0.532425370394879 1 0.108994394540787 experiment 0.935149259210241 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40574881 chr3:40574890 . . 0 30 hm5C_associated_SNPs_4354 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7381 DeepMRMD:1;iRNA_m5C:0.999536712157815 7382 chr3 40574890 40574890 1 + C G rs184243754 40574886 + 40574866 40574906 41 AAGTGATCCGCCTGCCTTGGCCCCCCAAAGTGCTGGGATTA AAGTGATCCGCCTGCCTTGGCCCCGCAAAGTGCTGGGATTA < 41bp 1 0.353947417140355 1 0.202188968658447 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40574886 chr3:40574890 . . 0 25 hm5C_associated_SNPs_4355 0 0 1 0 0 Nucleus 1 0.500231643873928 1 0.999536712252143 hm5C_site_7382 DeepMRMD:1;iRNA_m5C:0.999536712252143 7383 chr3 40574890 40574890 1 + C G rs184243754 40574887 + 40574867 40574907 41 AGTGATCCGCCTGCCTTGGCCCCCCAAAGTGCTGGGATTAC AGTGATCCGCCTGCCTTGGCCCCGCAAAGTGCTGGGATTAC < 41bp 1 0.277351468346325 1 0.225810915231705 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40574887 chr3:40574890 . . 0 24 hm5C_associated_SNPs_4356 0 0 1 0 0 Nucleus 1 0.500231643920771 1 0.999536712158458 hm5C_site_7383 DeepMRMD:1;iRNA_m5C:0.999536712158458 7384 chr3 40574890 40574890 1 + C G rs184243754 40574888 + 40574868 40574908 41 GTGATCCGCCTGCCTTGGCCCCCCAAAGTGCTGGGATTACA GTGATCCGCCTGCCTTGGCCCCGCAAAGTGCTGGGATTACA < 41bp 1 0.428203422247502 1 0.258544087409973 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40574888 chr3:40574890 . . 0 23 hm5C_associated_SNPs_4357 0 0 1 0 0 Nucleus 1 0.500231643921109 1 0.999536712157783 hm5C_site_7384 DeepMRMD:1;iRNA_m5C:0.999536712157783 7385 chr3 40574890 40574890 1 + C G rs184243754 40574889 + 40574869 40574909 41 TGATCCGCCTGCCTTGGCCCCCCAAAGTGCTGGGATTACAG TGATCCGCCTGCCTTGGCCCCGCAAAGTGCTGGGATTACAG < 41bp 1 0.570021161005092 1 0.443449139595032 experiment 0.859957677989817 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40574889 chr3:40574890 . . 0 22 hm5C_associated_SNPs_4358 0 0 1 0 0 Nucleus 1 0.500231643910668 1 0.999536712178664 hm5C_site_7385 DeepMRMD:1;iRNA_m5C:0.999536712178664 7386 chr3 40574890 40574890 1 + C G rs184243754 40574891 + 40574871 40574911 41 ATCCGCCTGCCTTGGCCCCCCAAAGTGCTGGGATTACAGGA ATCCGCCTGCCTTGGCCCCGCAAAGTGCTGGGATTACAGGA < 41bp 1 0.514074192236841 1 0.433186411857605 experiment 0.971851615526318 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40574891 chr3:40574890 . . 0 20 hm5C_associated_SNPs_4359 0 0 1 0 0 Nucleus 1 0.500231643867795 1 0.999536712264411 hm5C_site_7386 DeepMRMD:1;iRNA_m5C:0.999536712264411 7387 chr3 40576679 40576679 1 + T C rs551410199 40576676 + 40576656 40576696 41 CCAACTTGAGTTCGGAAGGGCTGTGGCCACCTCGTTTCGCC CCAACTTGAGTTCGGAAGGGCTGCGGCCACCTCGTTTCGCC < 41bp 1 0.661890919492973 1 0.459399312734604 experiment 0.676218161014055 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40576676 chr3:40576679 . . 0 24 hm5C_associated_SNPs_4360 0 0 1 0 0 Nucleus 1 0.50023164391797 1 0.999536712164061 hm5C_site_7387 DeepMRMD:1;iRNA_m5C:0.999536712164061 7388 chr3 40576685 40576685 1 + C T rs193091903 40576676 + 40576656 40576696 41 CCAACTTGAGTTCGGAAGGGCTGTGGCCACCTCGTTTCGCC CCAACTTGAGTTCGGAAGGGCTGTGGCCATCTCGTTTCGCC < 41bp 1 0.419469447435672 1 0.250703871250153 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40576676 chr3:40576685 . . 0 30 hm5C_associated_SNPs_4361 0 0 1 0 0 Nucleus 1 0.500231643924545 1 0.999536712150909 hm5C_site_7388 DeepMRMD:1;iRNA_m5C:0.999536712150909 7389 chr3 40576688 40576688 1 + C T rs570435131 40576676 + 40576656 40576696 41 CCAACTTGAGTTCGGAAGGGCTGTGGCCACCTCGTTTCGCC CCAACTTGAGTTCGGAAGGGCTGTGGCCACCTTGTTTCGCC < 41bp 1 0.46744580893602 1 0.346375793218613 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF621 ENSG00000172888 UTR3 Human protein_coding chr3:40576676 chr3:40576688 . . 0 33 hm5C_associated_SNPs_4362 0 0 1 0 0 Nucleus 1 0.500231643921095 1 0.999536712157809 hm5C_site_7389 DeepMRMD:1;iRNA_m5C:0.999536712157809 7390 chr3 41275106 41275106 1 + T C rs4135379 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACCTGTGCAGCTGGAATTCTCTCTAACCTCACTTGCAAT < 41bp 1 0.281525328102292 1 0.355161786079407 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275106 synonymous SNV . 0 23 hm5C_associated_SNPs_4363 1 0 1 0 1 Nucleus 1 0.50023164392108 1 0.999536712157839 hm5C_site_7390 DeepMRMD:1;iRNA_m5C:0.999536712157839 not specified not specified 7391 chr3 42700150 42700150 1 + C T rs147494762 42700143 + 42700123 42700163 41 CGCCTCATTGCTGCAGATGGCTGACATCGCTGCGTCCTGCC CGCCTCATTGCTGCAGATGGCTGACATTGCTGCGTCCTGCC < 41bp 1 0.323476902629793 1 0.0387597382068634 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42700143 chr3:42700150 synonymous SNV . 0 28 hm5C_associated_SNPs_4364 0 0 0 0 0 membrane 1 0.500231643921399 1 0.999536712157202 hm5C_site_7391 DeepMRMD:1;iRNA_m5C:0.999536712157202 7392 chr3 43732421 43732421 1 + G A rs564192984 43732441 + 43732421 43732461 41 GGGCGGCCCAGTCGGCCTGTCAGCCGGCTTCGAGATAAGTC AGGCGGCCCAGTCGGCCTGTCAGCCGGCTTCGAGATAAGTC < 41bp 1 0.685538471918259 1 0.501085042953491 experiment 0.628923056163483 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD5 ENSG00000011198 UTR5 Human protein_coding chr3:43732441 chr3:43732421 . . 0 1 hm5C_associated_SNPs_4365 1 0 0 0 0 Ribosome 1 0.500231644021785 0.997829914093018 0.999536711956429 hm5C_site_7392 DeepMRMD:0.997829914093018;iRNA_m5C:0.999536711956429 Triglyceride storage disease with ichthyosis Triglyceride storage disease with ichthyosis 7393 chr3 43732440 43732440 1 + T A rs375436268 43732441 + 43732421 43732461 41 GGGCGGCCCAGTCGGCCTGTCAGCCGGCTTCGAGATAAGTC GGGCGGCCCAGTCGGCCTGACAGCCGGCTTCGAGATAAGTC < 41bp 1 0.666623968533903 1 0.385254472494125 experiment 0.666752062932193 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD5 ENSG00000011198 UTR5 Human protein_coding chr3:43732441 chr3:43732440 . . 0 20 hm5C_associated_SNPs_4366 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7393 DeepMRMD:1;iRNA_m5C:0.999536712157815 7394 chr3 43732461 43732461 1 + C A rs189850893 43732441 + 43732421 43732461 41 GGGCGGCCCAGTCGGCCTGTCAGCCGGCTTCGAGATAAGTC GGGCGGCCCAGTCGGCCTGTCAGCCGGCTTCGAGATAAGTA < 41bp 1 0.685611781874315 1 0.38724946975708 experiment 0.62877643625137 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD5 ENSG00000011198 UTR5 Human protein_coding chr3:43732441 chr3:43732461 . . 0 41 hm5C_associated_SNPs_4367 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7394 DeepMRMD:1;iRNA_m5C:0.999536712157815 7395 chr3 44442775 44442775 1 + T C rs191875479 44442795 + 44442775 44442815 41 TTATTCTCACCAAAGCTCAGCAGGCAAGAGAGAACATGAAA CTATTCTCACCAAAGCTCAGCAGGCAAGAGAGAACATGAAA < 41bp 1 0.313550079814391 1 0.199618399143219 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCAIM ENSG00000179152 CDS Human protein_coding chr3:44442795 chr3:44442775 nonsynonymous SNV 0.770 4 1 hm5C_associated_SNPs_4368 0 0 1 0 1 Cytosol 1 0.500232054397544 1 0.999535891204912 hm5C_site_7395 DeepMRMD:1;iRNA_m5C:0.999535891204912 7396 chr3 44692552 44692552 1 + C T rs369773417 44692544 + 44692524 44692564 41 GCCCAGCTATAGGAGTTCCCCTGCTGAGCAGAGAAGATGAC GCCCAGCTATAGGAGTTCCCCTGCTGAGTAGAGAAGATGAC < 41bp 1 0.593915110580319 1 0.161522895097733 experiment 0.812169778839362 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF35 ENSG00000236869 ncRNA_intronic Human antisense chr3:44692544 chr3:44692552 . . 0 29 hm5C_associated_SNPs_4369 0 0 1 0 0 Cytosol 1 0.500231643912105 1 0.999536712175791 hm5C_site_7396 DeepMRMD:1;iRNA_m5C:0.999536712175791 7397 chr3 44692564 44692564 1 + C A rs2272044 44692544 + 44692524 44692564 41 GCCCAGCTATAGGAGTTCCCCTGCTGAGCAGAGAAGATGAC GCCCAGCTATAGGAGTTCCCCTGCTGAGCAGAGAAGATGAA < 41bp 1 0.593053340881949 1 0.186696082353592 experiment 0.813893318236103 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF35 ENSG00000169981 CDS Human protein_coding chr3:44692544 chr3:44692564 nonsynonymous SNV 0.999 2 41 hm5C_associated_SNPs_4370 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7397 DeepMRMD:1;iRNA_m5C:0.999536712157815 7398 chr3 45043095 45043095 1 + T C rs34376719 45043087 + 45043067 45043107 41 CCATTGCTGTAAAGGCTGCTCTCTTCAATACAAGGTAAGTC CCATTGCTGTAAAGGCTGCTCTCTTCAACACAAGGTAAGTC < 41bp 1 0.205565789218855 1 0.116656422615051 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45043087 chr3:45043095 synonymous SNV . 0 29 hm5C_associated_SNPs_4373 0 0 1 0 2 Ribosome 1 0.500231643919374 1 0.999536712161252 hm5C_site_7398 DeepMRMD:1;iRNA_m5C:0.999536712161252 7399 chr3 45565515 45565515 1 + C T rs533890419 45565503 + 45565483 45565523 41 CCTTAGCAAGCCTCTCAGAGCGTCATTCTCCACAGCCCCGA CCTTAGCAAGCCTCTCAGAGCGTCATTCTCCATAGCCCCGA < 41bp 1 0.554283915562806 1 0.0790659785270691 experiment 0.891432168874388 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45565503 chr3:45565515 synonymous SNV . 0 33 hm5C_associated_SNPs_4374 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643927617 1 0.999536712144765 hm5C_site_7399 DeepMRMD:1;iRNA_m5C:0.999536712144765 7400 chr3 45589702 45589702 1 + T C rs267267 45589719 + 45589699 45589739 41 GGATGTGCCTCCCAGGCCTGCTGTGGTTCTGACACACAGGA GGACGTGCCTCCCAGGCCTGCTGTGGTTCTGACACACAGGA < 41bp 1 0.56494374434798 1 0.340804755687714 experiment 0.87011251130404 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARS2 ENSG00000011376 UTR3 Human protein_coding chr3:45589719 chr3:45589702 . . 0 4 hm5C_associated_SNPs_4375 0 0 1 0 0 Endoplasmic reticulum 1 0.500231795195841 1 0.999536409608319 hm5C_site_7400 DeepMRMD:1;iRNA_m5C:0.999536409608319 7401 chr3 47041759 47041759 1 + G A rs139822454 47041773 + 47041753 47041793 41 TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC TCCTTCACCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC < 41bp 1 0.374112464117829 1 0.492101550102234 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041773 chr3:47041759 synonymous SNV . 0 7 hm5C_associated_SNPs_4376 1 0 1 0 1 Nucleus 1 0.500231643920781 1 0.999536712158438 hm5C_site_7401 DeepMRMD:1;iRNA_m5C:0.999536712158438 not specified not specified 7402 chr3 47041774 47041774 1 + G A rs115350407 47041773 + 47041753 47041793 41 TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC TCCTTCGCCACTGGATGGGCCACGGCCCTTTCCTGCTGCTC < 41bp 1 0.316654990383971 1 0.339733809232712 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041773 chr3:47041774 synonymous SNV . 0 22 hm5C_associated_SNPs_4377 0 0 1 0 1 Nucleus 1 0.500231643921087 1 0.999536712157826 hm5C_site_7402 DeepMRMD:1;iRNA_m5C:0.999536712157826 7403 chr3 47041777 47041777 1 + G A rs199842407 47041773 + 47041753 47041793 41 TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC TCCTTCGCCACTGGATGGGCCGCGACCCTTTCCTGCTGCTC < 41bp 1 0.483997862090656 1 0.552391111850739 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041773 chr3:47041777 synonymous SNV . 0 25 hm5C_associated_SNPs_4378 0 0 1 0 1 Nucleus 1 0.500231643921127 0.895217776298522 0.999536712157747 hm5C_site_7403 DeepMRMD:0.895217776298522;iRNA_m5C:0.999536712157747 7404 chr3 47047849 47047849 1 + T C rs564623375 47047857 + 47047837 47047877 41 TCGGCTCTCAGCTGAGGAAGCAGCCCATCGCCTTGCACGCC TCGGCTCTCAGCCGAGGAAGCAGCCCATCGCCTTGCACGCC < 41bp 1 0.189709917467235 1 0.728836715221405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47047857 chr3:47047849 synonymous SNV . 0 13 hm5C_associated_SNPs_4379 0 0 0 0 2 Nucleus 1 0.500231643924628 0.54232656955719 0.999536712150744 hm5C_site_7404 DeepMRMD:0.54232656955719;iRNA_m5C:0.999536712150744 7405 chr3 47050988 47050988 1 + T C rs529229466 47051000 + 47050980 47051020 41 GGCGGAAGTCCCGCCCCTCGCCGGCTGAGGGGCCGCCCTGA GGCGGAAGCCCCGCCCCTCGCCGGCTGAGGGGCCGCCCTGA < 41bp 1 0.690364065810912 1 0.905068933963776 experiment 0.619271868378175 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NBEAL2 ENSG00000160796 UTR3 Human protein_coding chr3:47051000 chr3:47050988 . . 0 9 hm5C_associated_SNPs_4380 0 0 1 0 0 Nucleus 1 0.500231643921092 0.189862132072448 0.999536712157815 hm5C_site_7405 DeepMRMD:0.189862132072448;iRNA_m5C:0.999536712157815 7406 chr3 47050989 47050989 1 + C A rs111271184 47051000 + 47050980 47051020 41 GGCGGAAGTCCCGCCCCTCGCCGGCTGAGGGGCCGCCCTGA GGCGGAAGTACCGCCCCTCGCCGGCTGAGGGGCCGCCCTGA < 41bp 1 0.685570235839911 1 0.889128088951111 experiment 0.628859528320177 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NBEAL2 ENSG00000160796 UTR3 Human protein_coding chr3:47051000 chr3:47050989 . . 0 10 hm5C_associated_SNPs_4381 1 0 1 0 0 Nucleus 1 0.500231643922311 0.221743822097778 0.999536712155379 hm5C_site_7406 DeepMRMD:0.221743822097778;iRNA_m5C:0.999536712155379 Gray platelet syndrome Gray platelet syndrome 7407 chr3 47382161 47382161 1 + G A rs138603242 47382146 + 47382126 47382166 41 TCCCTCAGCTCCGTGGAGACCTACTCACCTGAGACGGACAA TCCCTCAGCTCCGTGGAGACCTACTCACCTGAGACAGACAA < 41bp 1 0.298301473483381 1 0.215106427669525 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47382146 chr3:47382161 synonymous SNV . 0 36 hm5C_associated_SNPs_4382 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7407 DeepMRMD:1;iRNA_m5C:0.999536712157815 7408 chr3 47447473 47447473 1 + C A rs138320436 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTACGGGAGCACTTACCTCAAGCCTACAGC < 41bp 1 0.0794110021967535 1 0.0278002619743347 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447473 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_4383 0 0 1 0 3 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_7408 DeepMRMD:1;iRNA_m5C:0.999536712157815 7409 chr3 47455605 47455605 1 + T C rs535264774 47455586 - 47455566 47455606 41 CATGTCCTTGCCTCCAGGACCTGGGCTGTGGTGCAAGCTTG CGTGTCCTTGCCTCCAGGACCTGGGCTGTGGTGCAAGCTTG < 41bp 1 0.515109729431212 1 0.283552527427673 experiment 0.969780541137576 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCAP ENSG00000114650 intronic Human protein_coding chr3:47455586 chr3:47455605 . . 0 2 hm5C_associated_SNPs_4384 0 0 1 0 0 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_7409 DeepMRMD:1;iRNA_m5C:0.99953671215782 7410 chr3 47882517 47882517 1 + A G rs115678925 47882499 + 47882479 47882519 41 TGCCCCCTACTTCCTGGCGGCAGCTGAATCCAGAGAGTATT TGCCCCCTACTTCCTGGCGGCAGCTGAATCCAGAGAGTGTT < 41bp 1 0.289250901975271 1 0.124742209911346 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47882499 chr3:47882517 nonsynonymous SNV 0.986 1 39 hm5C_associated_SNPs_4385 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7410 DeepMRMD:1;iRNA_m5C:0.999536712157815 7411 chr3 48265146 48265146 1 + C T rs186026958 48265164 + 48265144 48265184 41 AGCGGTCCTCGGATGCTAACCTCTACCGCCTCCTGGACCTG AGTGGTCCTCGGATGCTAACCTCTACCGCCTCCTGGACCTG < 41bp 1 0.641530946403418 1 0.890673398971558 experiment 0.716938107193164 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CAMP ENSG00000164047 CDS Human protein_coding chr3:48265164 chr3:48265146 nonsynonymous SNV 0.611 0 3 hm5C_associated_SNPs_4386 0 0 0 0 1 exosome 1 0.500231643921093 0.218653202056884 0.999536712157815 hm5C_site_7411 DeepMRMD:0.218653202056884;iRNA_m5C:0.999536712157815 7412 chr3 48265173 48265173 1 + C T rs566707956 48265164 + 48265144 48265184 41 AGCGGTCCTCGGATGCTAACCTCTACCGCCTCCTGGACCTG AGCGGTCCTCGGATGCTAACCTCTACCGCTTCCTGGACCTG < 41bp 1 0.548290891910511 1 0.877153396606445 experiment 0.903418216178977 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CAMP ENSG00000164047 CDS Human protein_coding chr3:48265164 chr3:48265173 nonsynonymous SNV 0.939 2 30 hm5C_associated_SNPs_4387 0 0 0 0 1 exosome 1 0.500231643946561 0.24569320678711 0.999536712106879 hm5C_site_7412 DeepMRMD:0.24569320678711;iRNA_m5C:0.999536712106879 7413 chr3 48488360 48488360 1 + C T rs368960700 48488350 + 48488330 48488370 41 GCACCCCCCGAGCAAGCGGGCCCGGGGCTTCTCCGCAGCCG GCACCCCCCGAGCAAGCGGGCCCGGGGCTTTTCCGCAGCCG < 41bp 1 0.628708851222897 1 0.519837021827698 experiment 0.742582297554206 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48488350 chr3:48488360 synonymous SNV . 0 31 hm5C_associated_SNPs_4388 0 0 1 0 0 chromatin 1 0.500231643921092 0.960325956344604 0.999536712157815 hm5C_site_7413 DeepMRMD:0.960325956344604;iRNA_m5C:0.999536712157815 7414 chr3 48488360 48488360 1 + C T rs368960700 48488351 + 48488331 48488371 41 CACCCCCCGAGCAAGCGGGCCCGGGGCTTCTCCGCAGCCGC CACCCCCCGAGCAAGCGGGCCCGGGGCTTTTCCGCAGCCGC < 41bp 1 0.512820957597454 1 0.755409002304077 experiment 0.974358084805091 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48488351 chr3:48488360 synonymous SNV . 0 30 hm5C_associated_SNPs_4389 0 0 1 0 0 chromatin 1 0.500231643921092 0.489181995391846 0.999536712157815 hm5C_site_7414 DeepMRMD:0.489181995391846;iRNA_m5C:0.999536712157815 7415 chr3 48501519 48501519 1 + G A rs145979024 48501526 + 48501506 48501546 41 CAGTACCTTGGCTGGAATGTCAGGCCTCAGGACCACAGGTT CAGTACCTTGGCTAGAATGTCAGGCCTCAGGACCACAGGTT < 41bp 1 0.298402714422095 1 0.680025041103363 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48501526 chr3:48501519 nonsynonymous SNV 0.986 0 14 hm5C_associated_SNPs_4390 0 0 0 0 1 chromatin 1 0.500231664341999 0.639949917793274 0.999536671316002 hm5C_site_7415 DeepMRMD:0.639949917793274;iRNA_m5C:0.999536671316002 7416 chr3 48501539 48501539 1 + C T rs571666281 48501526 + 48501506 48501546 41 CAGTACCTTGGCTGGAATGTCAGGCCTCAGGACCACAGGTT CAGTACCTTGGCTGGAATGTCAGGCCTCAGGACTACAGGTT < 41bp 1 0.353070718955955 1 0.638180673122406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48501526 chr3:48501539 synonymous SNV . 0 34 hm5C_associated_SNPs_4391 0 0 0 0 1 chromatin 1 0.500231644486117 0.723638653755188 0.999536711027767 hm5C_site_7416 DeepMRMD:0.723638653755188;iRNA_m5C:0.999536711027767 7417 chr3 49021773 49021773 1 + A C rs143241623 49021771 + 49021751 49021791 41 GCATGGGGGCTGTGTTTGCACAAGTTATTTTCATGTTACCT GCATGGGGGCTGTGTTTGCACACGTTATTTTCATGTTACCT < 41bp 1 0.675124467187025 1 0.137365162372589 experiment 0.649751065625949 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARIH2 ENSG00000177479 UTR3 Human protein_coding chr3:49021771 chr3:49021773 . . 0 23 hm5C_associated_SNPs_4392 0 0 1 3 0 Cytosol 1 0.500231643900598 1 0.999536712198803 hm5C_site_7417 DeepMRMD:1;iRNA_m5C:0.999536712198803 7418 chr3 49050646 49050646 1 + T C rs61742101 49050657 + 49050637 49050677 41 TGGGCCCAGTGTCTACCCTGCCCTCTCTGCACGGGAAGCAG TGGGCCCAGCGTCTACCCTGCCCTCTCTGCACGGGAAGCAG < 41bp 1 0.0306724755879248 1 0.0255348682403564 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR6 ENSG00000178252 CDS Human protein_coding chr3:49050657 chr3:49050646 nonsynonymous SNV 0.543 1 10 hm5C_associated_SNPs_4393 0 0 1 0 0 Nucleus 1 0.500231643583176 1 0.999536712833647 hm5C_site_7418 DeepMRMD:1;iRNA_m5C:0.999536712833647 7419 chr3 49053338 49053338 1 + C A rs199567076 49053336 + 49053316 49053356 41 AGACTGAGTCACTGGCCCATCTCTTTGCTCTTGTGCCCCAG AGACTGAGTCACTGGCCCATCTATTTGCTCTTGTGCCCCAG < 41bp 1 0.415733805390675 1 0.206013709306717 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR6 ENSG00000178149 CDS Human protein_coding chr3:49053336 chr3:49053338 nonsynonymous SNV 0.240 1 23 hm5C_associated_SNPs_4394 0 0 1 1 0 Nucleus 1 0.500231643921528 1 0.999536712156944 hm5C_site_7419 DeepMRMD:1;iRNA_m5C:0.999536712156944 7420 chr3 49453180 49453180 1 + C T rs141422153 49453181 + 49453161 49453201 41 CACTATCCAGATGGAGGCACCAAACACCCACATACCTGGCC CACTATCCAGATGGAGGCATCAAACACCCACATACCTGGCC < 41bp 1 0.407284787744755 1 0.496783375740051 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TCTA ENSG00000145022 UTR3 Human protein_coding chr3:49453181 chr3:49453180 . . 0 20 hm5C_associated_SNPs_4395 0 0 1 1 0 Ribosome 1 0.500231644044657 1 0.999536711910685 hm5C_site_7420 DeepMRMD:1;iRNA_m5C:0.999536711910685 7421 chr3 49706498 49706498 1 + C G rs192202663 49706486 + 49706466 49706506 41 GTGGCAGGACTCGCTGCTGCCAGGTGAGTCACCGCCTGTCC GTGGCAGGACTCGCTGCTGCCAGGTGAGTCACGGCCTGTCC < 41bp 1 0.59897738195095 1 0.929218053817749 experiment 0.802045236098099 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control BSN ENSG00000164061 UTR3 Human protein_coding chr3:49706486 chr3:49706498 . . 0 33 hm5C_associated_SNPs_4396 0 0 0 0 0 chromatin 1 0.500231737885754 0.141563892364502 0.999536524228491 hm5C_site_7421 DeepMRMD:0.141563892364502;iRNA_m5C:0.999536524228491 7422 chr3 49706500 49706500 1 + C T rs369511048 49706486 + 49706466 49706506 41 GTGGCAGGACTCGCTGCTGCCAGGTGAGTCACCGCCTGTCC GTGGCAGGACTCGCTGCTGCCAGGTGAGTCACCGTCTGTCC < 41bp 1 0.599856526025392 1 0.912106394767761 experiment 0.800286947949217 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control BSN ENSG00000164061 UTR3 Human protein_coding chr3:49706486 chr3:49706500 . . 0 35 hm5C_associated_SNPs_4397 0 0 0 0 0 chromatin 1 0.500231643992095 0.175787210464478 0.999536712015811 hm5C_site_7422 DeepMRMD:0.175787210464478;iRNA_m5C:0.999536712015811 7423 chr3 49736907 49736907 1 + A C rs145834474 49736916 + 49736896 49736936 41 GGCACCTACCCAGTGGCAGGCTACCGGCCCCTGCAGGACCC GGCACCTACCCCGTGGCAGGCTACCGGCCCCTGCAGGACCC < 41bp 1 0.248876876884627 1 0.288340479135513 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49736916 chr3:49736907 synonymous SNV . 0 12 hm5C_associated_SNPs_4398 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7423 DeepMRMD:1;iRNA_m5C:0.999536712157815 7424 chr3 49736907 49736907 1 + A C rs145834474 49736919 + 49736899 49736939 41 ACCTACCCAGTGGCAGGCTACCGGCCCCTGCAGGACCCACC ACCTACCCCGTGGCAGGCTACCGGCCCCTGCAGGACCCACC < 41bp 1 0.183556370557322 1 0.378927916288376 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49736919 chr3:49736907 synonymous SNV . 0 9 hm5C_associated_SNPs_4399 0 0 1 0 0 Nucleus 1 0.500231643806226 1 0.999536712387547 hm5C_site_7424 DeepMRMD:1;iRNA_m5C:0.999536712387547 7425 chr3 50131278 50131278 1 + C T rs566441117 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCATGCTGCGTGGCCTTCCCAT < 41bp 1 0.407606994591785 1 0.239703893661499 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131278 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_4400 0 0 1 0 2 Cytosol 1 0.500231641009372 1 0.999536717981256 hm5C_site_7425 DeepMRMD:1;iRNA_m5C:0.999536717981256 7426 chr3 50220193 50220193 1 + G A rs565856671 50220185 + 50220165 50220205 41 AGAGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCGGGC AGAGGCGCCGCAGAGCCCCGCGGTGTACACCCGCATCGGGC < 41bp 1 0.359615371708964 1 0.804045915603638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220185 chr3:50220193 nonsynonymous SNV 0.957 1 29 hm5C_associated_SNPs_4401 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643919221 0.391908168792724 0.999536712161557 hm5C_site_7426 DeepMRMD:0.391908168792724;iRNA_m5C:0.999536712161557 7427 chr3 50296220 50296220 1 + C A rs183872438 50296233 + 50296213 50296253 41 CCCCAGCCGCTCGGAGGCCCCAAAGGAAAAAGCACAAGAAG CCCCAGCAGCTCGGAGGCCCCAAAGGAAAAAGCACAAGAAG < 41bp 1 0.530428581036163 1 0.71609890460968 experiment 0.939142837927673 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNAI2 ENSG00000114353 UTR3 Human protein_coding chr3:50296233 chr3:50296220 . . 0 8 hm5C_associated_SNPs_4402 0 0 1 0 0 Ribosome 1 0.500231639839185 0.56780219078064 0.999536720321629 hm5C_site_7427 DeepMRMD:0.56780219078064;iRNA_m5C:0.999536720321629 7428 chr3 50296234 50296234 1 + A C rs188823486 50296233 + 50296213 50296253 41 CCCCAGCCGCTCGGAGGCCCCAAAGGAAAAAGCACAAGAAG CCCCAGCCGCTCGGAGGCCCCCAAGGAAAAAGCACAAGAAG < 41bp 1 0.23685488518242 1 0.402653425931931 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNAI2 ENSG00000114353 UTR3 Human protein_coding chr3:50296233 chr3:50296234 . . 0 22 hm5C_associated_SNPs_4403 0 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7428 DeepMRMD:1;iRNA_m5C:0.999536712157815 7429 chr3 50306760 50306760 1 + G A rs587618842 50306747 + 50306727 50306767 41 GTGGGGCTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGG GTGGGGCTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGG < 41bp 1 0.462950525758882 1 0.491196781396866 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human other chr3:50306747 chr3:50306760 . 0.952 1 34 hm5C_associated_SNPs_4404 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7429 DeepMRMD:1;iRNA_m5C:0.999536712157815 7430 chr3 50306760 50306760 1 + G A rs587618842 50306748 + 50306728 50306768 41 TGGGGCTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGC TGGGGCTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGC < 41bp 1 0.241369860771959 1 0.341951906681061 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human other chr3:50306748 chr3:50306760 . 0.952 1 33 hm5C_associated_SNPs_4405 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7430 DeepMRMD:1;iRNA_m5C:0.999536712157815 7431 chr3 50306760 50306760 1 + G A rs587618842 50306749 + 50306729 50306769 41 GGGGCTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCT GGGGCTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCT < 41bp 1 0.234078876644017 1 0.451379358768463 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human other chr3:50306749 chr3:50306760 . 0.952 1 32 hm5C_associated_SNPs_4406 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7431 DeepMRMD:1;iRNA_m5C:0.999536712157815 7432 chr3 50306760 50306760 1 + G A rs587618842 50306750 + 50306730 50306770 41 GGGCTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCTC GGGCTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCTC < 41bp 1 0.481074905667324 1 0.410700619220734 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human other chr3:50306750 chr3:50306760 . 0.952 1 31 hm5C_associated_SNPs_4407 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157817 hm5C_site_7432 DeepMRMD:1;iRNA_m5C:0.999536712157817 7433 chr3 50306760 50306760 1 + G A rs587618842 50306753 + 50306733 50306773 41 CTGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCTCTCC CTGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCTCTCC < 41bp 1 0.165629912910123 1 0.147392421960831 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human other chr3:50306753 chr3:50306760 . 0.952 1 28 hm5C_associated_SNPs_4408 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7433 DeepMRMD:1;iRNA_m5C:0.999536712157815 7434 chr3 50306760 50306760 1 + G A rs587618842 50306754 + 50306734 50306774 41 TGGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCTCTCCT TGGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCTCTCCT < 41bp 1 0.300466700403547 1 0.343337565660477 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human other chr3:50306754 chr3:50306760 . 0.952 1 27 hm5C_associated_SNPs_4409 0 0 1 0 2 Nucleus 1 0.50023163463813 1 0.999536730723741 hm5C_site_7434 DeepMRMD:1;iRNA_m5C:0.999536730723741 7435 chr3 50306760 50306760 1 + G A rs587618842 50306755 + 50306735 50306775 41 GGGGAGTGCCGCCCCCAGCCCCCACGCCTTCGGCTCTCCTT GGGGAGTGCCGCCCCCAGCCCCCACACCTTCGGCTCTCCTT < 41bp 1 0.122465504139856 1 0.189752280712128 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SEMA3B ENSG00000012171;ENSG00000012171 ncRNA_exonic;splicing Human other chr3:50306755 chr3:50306760 . 0.952 1 26 hm5C_associated_SNPs_4410 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7435 DeepMRMD:1;iRNA_m5C:0.999536712157815 7436 chr3 50683610 50683610 1 + G A rs183396526 50683592 + 50683572 50683612 41 CTTTGTGGCTTCCCACCCTTCTACTCCAACACGGGCCAGGC CTTTGTGGCTTCCCACCCTTCTACTCCAACACGGGCCAAGC < 41bp 1 0.363565826343686 1 0.337861299514771 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683592 chr3:50683610 synonymous SNV . 0 39 hm5C_associated_SNPs_4411 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7436 DeepMRMD:1;iRNA_m5C:0.999536712157815 7437 chr3 51433254 51433254 1 + C A rs146912969 51433266 + 51433246 51433286 41 ACAGGTGCCTCGCAAGAGAGCAAGCACGTTCATAACAAAAC ACAGGTGCATCGCAAGAGAGCAAGCACGTTCATAACAAAAC < 41bp 1 0.420740738568122 1 0.326697528362274 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM15B ENSG00000179837 UTR3 Human other chr3:51433266 chr3:51433254 . . 0 9 hm5C_associated_SNPs_4413 0 0 1 0 0 Cytosol 1 0.500231644096943 1 0.999536711806114 hm5C_site_7437 DeepMRMD:1;iRNA_m5C:0.999536711806114 7438 chr3 51980281 51980281 1 + C T rs201317730 51980280 + 51980260 51980300 41 GCCATCCTCACTAGTGGGCTCCGCATCATGCCACATTCTGG GCCATCCTCACTAGTGGGCTCTGCATCATGCCACATTCTGG < 41bp 1 0.593432305112766 1 0.453125983476639 experiment 0.813135389774468 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PARP3 ENSG00000041880 CDS Human protein_coding chr3:51980280 chr3:51980281 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_4414 0 0 0 0 2 nucleus 1 0.500231645214145 1 0.999536709571711 hm5C_site_7438 DeepMRMD:1;iRNA_m5C:0.999536709571711 7439 chr3 52014897 52014897 1 + C G rs61729088 52014890 + 52014870 52014910 41 TATGGAGAGCTGGACCACATCCTGGCTCGAGAGTCACTGCG TATGGAGAGCTGGACCACATCCTGGCTGGAGAGTCACTGCG < 41bp 1 0.453746317824881 1 0.428369373083115 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ABHD14A ENSG00000248487 CDS Human protein_coding chr3:52014890 chr3:52014897 nonsynonymous SNV 0.741 0 28 hm5C_associated_SNPs_4417 0 0 1 0 1 Ribosome 1 0.500231643920745 1 0.99953671215851 hm5C_site_7439 DeepMRMD:1;iRNA_m5C:0.99953671215851 7440 chr3 52014907 52014907 1 + T G rs34149506 52014890 + 52014870 52014910 41 TATGGAGAGCTGGACCACATCCTGGCTCGAGAGTCACTGCG TATGGAGAGCTGGACCACATCCTGGCTCGAGAGTCACGGCG < 41bp 1 0.467548150240906 1 0.602752864360809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ABHD14A ENSG00000248487 CDS Human protein_coding chr3:52014890 chr3:52014907 nonsynonymous SNV 0.826 2 38 hm5C_associated_SNPs_4418 0 0 1 0 1 Ribosome 1 0.50023164392109 0.794494271278382 0.99953671215782 hm5C_site_7440 DeepMRMD:0.794494271278382;iRNA_m5C:0.99953671215782 7441 chr3 52014910 52014910 1 + G A rs201197998 52014890 + 52014870 52014910 41 TATGGAGAGCTGGACCACATCCTGGCTCGAGAGTCACTGCG TATGGAGAGCTGGACCACATCCTGGCTCGAGAGTCACTGCA < 41bp 1 0.423969442100243 1 0.501756608486176 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ABHD14A ENSG00000248487 CDS Human protein_coding chr3:52014890 chr3:52014910 nonsynonymous SNV 0.786 0 41 hm5C_associated_SNPs_4419 0 0 1 0 1 Ribosome 1 0.500231643902193 0.996486783027648 0.999536712195615 hm5C_site_7441 DeepMRMD:0.996486783027648;iRNA_m5C:0.999536712195615 7442 chr3 52233264 52233264 1 + A G rs150932815 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGGGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT < 41bp 1 0.31088807073709 1 0.207776248455048 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233264 nonsynonymous SNV 0.991 2 7 hm5C_associated_SNPs_4420 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_7442 DeepMRMD:1;iRNA_m5C:0.999536712157815 7443 chr3 52233295 52233295 1 + G A rs35338461 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCAAGT < 41bp 1 0.321924047081166 1 0.316384851932526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233295 nonsynonymous SNV 0.995 2 38 hm5C_associated_SNPs_4421 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7443 DeepMRMD:1;iRNA_m5C:0.999536712157815 7444 chr3 52233384 52233384 1 + C T rs61729068 52233380 + 52233360 52233400 41 AAGATGATGGAAGTTGGGGCCAAGCCAGCCCCTCGGGCATT AAGATGATGGAAGTTGGGGCCAAGTCAGCCCCTCGGGCATT < 41bp 1 0.55861504190876 1 0.420797228813171 experiment 0.88276991618248 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233380 chr3:52233384 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_4422 0 0 1 0 0 Cytosol 1 0.500231643920972 1 0.999536712158056 hm5C_site_7444 DeepMRMD:1;iRNA_m5C:0.999536712158056 7445 chr3 52233387 52233387 1 + G T rs61729067 52233380 + 52233360 52233400 41 AAGATGATGGAAGTTGGGGCCAAGCCAGCCCCTCGGGCATT AAGATGATGGAAGTTGGGGCCAAGCCATCCCCTCGGGCATT < 41bp 1 0.423846225959583 1 0.483277320861816 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233380 chr3:52233387 nonsynonymous SNV 0.996 1 28 hm5C_associated_SNPs_4423 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7445 DeepMRMD:1;iRNA_m5C:0.999536712157815 7446 chr3 52237928 52237928 1 + T C rs199507022 52237938 + 52237918 52237958 41 TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAAC TGAAAACCGACGGAGGGGATCCCAGTGGACTGCTGAAGAAC < 41bp 1 0.372471349642954 1 0.153579235076904 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52237938 chr3:52237928 synonymous SNV . 0 11 hm5C_associated_SNPs_4424 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7446 DeepMRMD:1;iRNA_m5C:0.999536712157815 7447 chr3 52325039 52325039 1 + G A rs35976326 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCAGACCGCGATGCGCTGCGGG < 41bp 1 0.510271893815527 1 0.493677467107773 experiment 0.979456212368946 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325039 synonymous SNV . 0 22 hm5C_associated_SNPs_4425 0 0 1 0 2 chromatin 1 0.50023164589586 1 0.99953670820828 hm5C_site_7447 DeepMRMD:1;iRNA_m5C:0.99953670820828 7448 chr3 52325051 52325051 1 + G A rs9831689 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCGGACCGCGATGCACTGCGGG < 41bp 1 0.526799119337723 1 0.752276539802551 experiment 0.946401761324553 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325051 synonymous SNV . 0 34 hm5C_associated_SNPs_4426 0 0 1 0 2 chromatin 1 0.500231643921684 0.495446920394898 0.999536712156632 hm5C_site_7448 DeepMRMD:0.495446920394898;iRNA_m5C:0.999536712156632 7449 chr3 52325055 52325055 1 + C T rs199906865 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGTGGG < 41bp 1 0.528955027934004 1 0.736283481121063 experiment 0.942089944131993 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325055 nonsynonymous SNV 0.004 3 38 hm5C_associated_SNPs_4427 0 0 1 0 2 chromatin 1 0.500231643821757 0.527433037757874 0.999536712356486 hm5C_site_7449 DeepMRMD:0.527433037757874;iRNA_m5C:0.999536712356486 7450 chr3 57898184 57898184 1 + T C rs554868355 57898199 + 57898179 57898219 41 AGAGATGAATTGCTTAGTGCCCGAGATGAAATTTTGCTCCT AGAGACGAATTGCTTAGTGCCCGAGATGAAATTTTGCTCCT < 41bp 1 0.531532343324475 1 0.69355046749115 experiment 0.93693531335105 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLMAP ENSG00000163681 CDS Human protein_coding chr3:57898199 chr3:57898184 synonymous SNV . 0 6 hm5C_associated_SNPs_4429 0 0 1 0 1 Ribosome 1 0.500231643349396 0.6128990650177 0.999536713301208 hm5C_site_7450 DeepMRMD:0.6128990650177;iRNA_m5C:0.999536713301208 7451 chr3 57994398 57994398 1 + G A rs142568031 57994397 + 57994377 57994417 41 ACCTCAAGTGCGTGAACAAACGCATCGGCAACCTGCAGACC ACCTCAAGTGCGTGAACAAACACATCGGCAACCTGCAGACC < 41bp 1 0.309204261159778 1 0.0732654631137848 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:57994397 chr3:57994398 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_4430 0 1 0 0 0 Cytosol 1 0.500231875293799 1 0.999536249412403 hm5C_site_7451 DeepMRMD:1;iRNA_m5C:0.999536249412403 7452 chr3 57994398 57994398 1 + G A rs142568031 57994399 + 57994379 57994419 41 CTCAAGTGCGTGAACAAACGCATCGGCAACCTGCAGACCGA CTCAAGTGCGTGAACAAACACATCGGCAACCTGCAGACCGA < 41bp 1 0.253236478228003 1 0.143116116523743 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:57994399 chr3:57994398 nonsynonymous SNV 0.999 5 20 hm5C_associated_SNPs_4431 0 1 0 0 0 Cytosol 1 0.50023169505741 1 0.999536609885179 hm5C_site_7452 DeepMRMD:1;iRNA_m5C:0.999536609885179 7453 chr3 58067436 58067436 1 + C T rs111433950 58067455 + 58067435 58067475 41 CCAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAAC CTAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAAC < 41bp 1 0.0156858980953096 1 0.0678444504737854 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067455 chr3:58067436 synonymous SNV . 0 2 hm5C_associated_SNPs_4432 1 0 1 0 2 Cytosol 1 0.500231643625066 1 0.999536712749869 hm5C_site_7453 DeepMRMD:1;iRNA_m5C:0.999536712749869 not specified not specified 7454 chr3 58067436 58067436 1 + C T rs111433950 58067456 + 58067436 58067476 41 CAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAACC TAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAACC < 41bp 1 0.0518128660244948 1 0.272881329059601 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067456 chr3:58067436 synonymous SNV . 0 1 hm5C_associated_SNPs_4433 1 0 1 0 2 Cytosol 1 0.500231643921079 1 0.999536712157842 hm5C_site_7454 DeepMRMD:1;iRNA_m5C:0.999536712157842 not specified not specified 7455 chr3 58092578 58092578 1 + C T rs62621999 58092593 + 58092573 58092613 41 AGCCACGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC AGCCATGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC < 41bp 1 0.389674697027499 1 0.358109205961227 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092593 chr3:58092578 nonsynonymous SNV 0.393 1 6 hm5C_associated_SNPs_4434 1 0 1 0 1 Cytosol 1 0.500231643917125 1 0.99953671216575 hm5C_site_7455 DeepMRMD:1;iRNA_m5C:0.99953671216575 FLNB-Related Spectrum Disorders FLNB-Related Spectrum Disorders 7456 chr3 58092578 58092578 1 + C T rs62621999 58092598 + 58092578 58092618 41 CGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGCTGTGC TGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGCTGTGC < 41bp 1 0.513362028857744 1 0.258530467748642 experiment 0.973275942284512 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092598 chr3:58092578 nonsynonymous SNV 0.393 1 1 hm5C_associated_SNPs_4435 1 0 1 0 1 Cytosol 1 0.500231643920854 1 0.999536712158293 hm5C_site_7456 DeepMRMD:1;iRNA_m5C:0.999536712158293 FLNB-Related Spectrum Disorders FLNB-Related Spectrum Disorders 7457 chr3 58092589 58092589 1 + A C rs146859540 58092593 + 58092573 58092613 41 AGCCACGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC AGCCACGGGAGGCTACCACCCTGATCTGGTGAATCAGCTGC < 41bp 1 0.357738138134036 1 0.248545110225677 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092593 chr3:58092589 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_4436 0 0 1 0 1 Cytosol 1 0.500231643856736 1 0.999536712286528 hm5C_site_7457 DeepMRMD:1;iRNA_m5C:0.999536712286528 7458 chr3 58092589 58092589 1 + A C rs146859540 58092598 + 58092578 58092618 41 CGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGCTGTGC CGGGAGGCTACCACCCTGATCTGGTGAATCAGCTGCTGTGC < 41bp 1 0.56449683926861 1 0.259912252426147 experiment 0.87100632146278 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092598 chr3:58092589 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_4437 0 0 1 0 1 Cytosol 1 0.500231643910166 1 0.999536712179668 hm5C_site_7458 DeepMRMD:1;iRNA_m5C:0.999536712179668 7459 chr3 58097556 58097556 1 + T G rs376893941 58097553 + 58097533 58097573 41 CCTTTCAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAA CCTTTCAGAGTCAAAGTTGACCCGTCCCACGATGCCAGCAA < 41bp 1 0.239325436221197 1 0.138468414545059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097553 chr3:58097556 synonymous SNV . 0 24 hm5C_associated_SNPs_4438 1 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7459 DeepMRMD:1;iRNA_m5C:0.999536712157815 FLNB-Related Spectrum Disorders FLNB-Related Spectrum Disorders 7460 chr3 58097556 58097556 1 + T G rs376893941 58097554 + 58097534 58097574 41 CTTTCAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAA CTTTCAGAGTCAAAGTTGACCCGTCCCACGATGCCAGCAAA < 41bp 1 0.0302380239659586 1 0.446276485919952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097554 chr3:58097556 synonymous SNV . 0 23 hm5C_associated_SNPs_4439 1 0 1 0 2 Cytosol 1 0.500231644392974 1 0.999536711214053 hm5C_site_7460 DeepMRMD:1;iRNA_m5C:0.999536711214053 FLNB-Related Spectrum Disorders FLNB-Related Spectrum Disorders 7461 chr3 58097556 58097556 1 + T G rs376893941 58097558 + 58097538 58097578 41 CAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGA CAGAGTCAAAGTTGACCCGTCCCACGATGCCAGCAAAGTGA < 41bp 1 0.0288242196215927 1 0.173958629369736 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097558 chr3:58097556 synonymous SNV . 0 19 hm5C_associated_SNPs_4440 1 0 1 0 2 Cytosol 1 0.500231643945522 1 0.999536712108956 hm5C_site_7461 DeepMRMD:1;iRNA_m5C:0.999536712108956 FLNB-Related Spectrum Disorders FLNB-Related Spectrum Disorders 7462 chr3 58097556 58097556 1 + T G rs376893941 58097560 + 58097540 58097580 41 GAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGAAG GAGTCAAAGTTGACCCGTCCCACGATGCCAGCAAAGTGAAG < 41bp 1 0.652629725942173 1 0.156654626131058 experiment 0.694740548115655 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097560 chr3:58097556 synonymous SNV . 0 17 hm5C_associated_SNPs_4441 1 0 1 0 2 Cytosol 1 0.500231645414147 1 0.999536709171706 hm5C_site_7462 DeepMRMD:1;iRNA_m5C:0.999536709171706 FLNB-Related Spectrum Disorders FLNB-Related Spectrum Disorders 7463 chr3 58112440 58112440 1 + A G rs2362903 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCCTTTCGCGCCGGGGGATTACGATGTTA < 41bp 1 0.505898276024337 1 0.194136768579483 experiment 0.988203447951325 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112440 synonymous SNV . 0 22 hm5C_associated_SNPs_4442 2 0 1 0 1 Cytosol 1 0.500231643921219 1 0.999536712157561 hm5C_site_7463 DeepMRMD:1;iRNA_m5C:0.999536712157561 not specified not specified 7464 chr3 58112440 58112440 1 + A G rs2362903 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCCTTTCGCGCCGGGGGATTACGATGTTAAT < 41bp 1 0.169489164102487 1 0.375142216682434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112440 synonymous SNV . 0 20 hm5C_associated_SNPs_4443 2 0 1 0 1 Cytosol 1 0.500231643921127 1 0.999536712157746 hm5C_site_7464 DeepMRMD:1;iRNA_m5C:0.999536712157746 not specified not specified 7465 chr3 58112440 58112440 1 + A G rs2362903 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCCTTTCGCGCCGGGGGATTACGATGTTAATA < 41bp 1 0.387542809185219 1 0.8094322681427 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112440 synonymous SNV . 0 19 hm5C_associated_SNPs_4444 2 0 1 0 1 Cytosol 1 0.500231644016408 0.3811354637146 0.999536711967183 hm5C_site_7465 DeepMRMD:0.3811354637146;iRNA_m5C:0.999536711967183 not specified not specified 7466 chr3 58292010 58292010 1 + G A rs114294662 58292007 + 58291987 58292027 41 TCACGCTTCGTGGGGCGGGACGAGGAGAAGCCAAACGTAAA TCACGCTTCGTGGGGCGGGACGAAGAGAAGCCAAACGTAAA < 41bp 1 0.644194466751988 1 0.572266221046448 experiment 0.711611066496024 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HTD2;RPP14 ENSG00000163684 UTR5 Human protein_coding chr3:58292007 chr3:58292010 . . 0 24 hm5C_associated_SNPs_4445 0 0 1 0 0 unknown 1 0.500231676898898 0.855467557907104 0.999536646202204 hm5C_site_7466 DeepMRMD:0.855467557907104;iRNA_m5C:0.999536646202204 7467 chr3 62229553 62229553 1 + C T rs1352882 62229569 + 62229549 62229589 41 GTATCCCTATTATTCCTATTCCGGGTAAGTAAGACACTGCT GTATTCCTATTATTCCTATTCCGGGTAAGTAAGACACTGCT < 41bp 1 0.224875813358384 1 0.898061871528625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62229569 chr3:62229553 synonymous SNV . 0 5 hm5C_associated_SNPs_4446 0 0 0 0 2 Ribosome 1 0.500231610790996 0.20387625694275 0.999536778418007 hm5C_site_7467 DeepMRMD:0.20387625694275;iRNA_m5C:0.999536778418007 7468 chr3 63531170 63531170 1 + G A rs113239055 63531173 + 63531153 63531193 41 AGAAGCTAAACAGGGTCGGGCCTGGTTAGTACTTGGATGGG AGAAGCTAAACAGGGTCAGGCCTGGTTAGTACTTGGATGGG < 41bp 1 0.0651567766005854 1 0.15045353770256 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SYNPR-AS1 ENSG00000252301 ncRNA_exonic Human rRNA chr3:63531173 chr3:63531170 . . 0 18 hm5C_associated_SNPs_4447 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_7468 DeepMRMD:1;iRNA_m5C:0.999536712157815 7469 chr3 63531170 63531170 1 + G A rs113239055 63531174 + 63531154 63531194 41 GAAGCTAAACAGGGTCGGGCCTGGTTAGTACTTGGATGGGG GAAGCTAAACAGGGTCAGGCCTGGTTAGTACTTGGATGGGG < 41bp 1 0.184803015920161 1 0.206924557685852 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SYNPR-AS1 ENSG00000252301 ncRNA_exonic Human rRNA chr3:63531174 chr3:63531170 . . 0 17 hm5C_associated_SNPs_4448 0 0 1 0 0 unknown 1 0.500231643950693 1 0.999536712098615 hm5C_site_7469 DeepMRMD:1;iRNA_m5C:0.999536712098615 7470 chr3 63898266 63898266 1 + G A rs547615608 63898267 + 63898247 63898287 41 TTTTTGTTACATTGTAGGAGCGGAAAGAATGTCGGAGCGGG TTTTTGTTACATTGTAGGAACGGAAAGAATGTCGGAGCGGG < 41bp 1 0.699153019934991 1 0.221601933240891 experiment 0.601693960130019 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATXN7 ENSG00000163635 UTR5 Human protein_coding chr3:63898267 chr3:63898266 . . 0 20 hm5C_associated_SNPs_4449 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_7470 DeepMRMD:1;iRNA_m5C:0.999536712157814 7471 chr3 66419942 66419942 1 + A G rs1129179 66419929 + 66419909 66419949 41 TGCCGCTGCAGTCACCACCCCTCTAGACGTGGCAAAGACAA TGCCGCTGCAGTCACCACCCCTCTAGACGTGGCGAAGACAA < 41bp 1 0.43377064321731 1 0.891325235366821 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control SLC25A26 ENSG00000144741 CDS Human protein_coding chr3:66419929 chr3:66419942 synonymous SNV . 0 34 hm5C_associated_SNPs_4450 0 0 1 0 2 Ribosome 1 0.500231643921092 0.217349529266358 0.999536712157815 hm5C_site_7471 DeepMRMD:0.217349529266358;iRNA_m5C:0.999536712157815 7472 chr3 66428570 66428570 1 + G A rs182030212 66428555 + 66428535 66428575 41 TGTATCTGATCTTTCATTTCCTGCCACCTGATGGTGGATTC TGTATCTGATCTTTCATTTCCTGCCACCTGATGGTAGATTC < 41bp 1 0.0850554864345031 1 0.208293944597244 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC25A26 ENSG00000144741 UTR3 Human protein_coding chr3:66428555 chr3:66428570 . . 0 36 hm5C_associated_SNPs_4451 0 0 1 0 0 Ribosome 1 0.500231643924477 1 0.999536712151047 hm5C_site_7472 DeepMRMD:1;iRNA_m5C:0.999536712151047 7473 chr3 66428570 66428570 1 + G A rs182030212 66428558 + 66428538 66428578 41 ATCTGATCTTTCATTTCCTGCCACCTGATGGTGGATTCAGC ATCTGATCTTTCATTTCCTGCCACCTGATGGTAGATTCAGC < 41bp 1 0.0056042900378647 1 0.0496841371059418 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC25A26 ENSG00000144741 UTR3 Human protein_coding chr3:66428558 chr3:66428570 . . 0 33 hm5C_associated_SNPs_4452 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7473 DeepMRMD:1;iRNA_m5C:0.999536712157815 7474 chr3 66428570 66428570 1 + G A rs182030212 66428559 + 66428539 66428579 41 TCTGATCTTTCATTTCCTGCCACCTGATGGTGGATTCAGCA TCTGATCTTTCATTTCCTGCCACCTGATGGTAGATTCAGCA < 41bp 1 0.0355706287908817 1 0.35126730799675 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC25A26 ENSG00000144741 UTR3 Human protein_coding chr3:66428559 chr3:66428570 . . 0 32 hm5C_associated_SNPs_4453 0 0 1 0 0 Ribosome 1 0.500231644192555 1 0.99953671161489 hm5C_site_7474 DeepMRMD:1;iRNA_m5C:0.99953671161489 7475 chr3 66428570 66428570 1 + G A rs182030212 66428561 + 66428541 66428581 41 TGATCTTTCATTTCCTGCCACCTGATGGTGGATTCAGCAGA TGATCTTTCATTTCCTGCCACCTGATGGTAGATTCAGCAGA < 41bp 1 0.0309069129907983 1 0.103060841560364 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC25A26 ENSG00000144741 UTR3 Human protein_coding chr3:66428561 chr3:66428570 . . 0 30 hm5C_associated_SNPs_4454 0 0 1 0 0 Ribosome 1 0.50023165066646 1 0.99953669866708 hm5C_site_7475 DeepMRMD:1;iRNA_m5C:0.99953669866708 7476 chr3 66428570 66428570 1 + G A rs182030212 66428562 + 66428542 66428582 41 GATCTTTCATTTCCTGCCACCTGATGGTGGATTCAGCAGAA GATCTTTCATTTCCTGCCACCTGATGGTAGATTCAGCAGAA < 41bp 1 0.0641372785482233 1 0.479296296834946 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC25A26 ENSG00000144741 UTR3 Human protein_coding chr3:66428562 chr3:66428570 . . 0 29 hm5C_associated_SNPs_4455 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7476 DeepMRMD:1;iRNA_m5C:0.999536712157815 7477 chr3 66430811 66430811 1 + T A rs2279290 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCGCGCGGAAGCCCTGTACTTGCTTGTTTCCAAT < 41bp 1 0.549658246372968 1 0.286845862865448 experiment 0.900683507254064 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430811 nonsynonymous SNV 0.295 1 22 hm5C_associated_SNPs_4456 0 0 0 0 0 Ribosome 1 0.500231643925588 1 0.999536712148825 hm5C_site_7477 DeepMRMD:1;iRNA_m5C:0.999536712148825 7478 chr3 66430819 66430819 1 + C T rs140433888 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCGCGCAGAAGCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.477347930386128 1 0.0953966677188873 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430819 synonymous SNV . 0 14 hm5C_associated_SNPs_4457 0 0 0 0 1 Ribosome 1 0.500231643955406 1 0.999536712089187 hm5C_site_7478 DeepMRMD:1;iRNA_m5C:0.999536712089187 7479 chr3 66430822 66430822 1 + G A rs138156364 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCGTGCGGAAGCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.549179973108429 1 0.248884528875351 experiment 0.901640053783141 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430822 synonymous SNV . 0 11 hm5C_associated_SNPs_4458 0 0 0 0 1 Ribosome 1 0.500231643921054 1 0.999536712157892 hm5C_site_7479 DeepMRMD:1;iRNA_m5C:0.999536712157892 7480 chr3 66430823 66430823 1 + C T rs572487143 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCACGCGGAAGCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.494989296334008 1 0.25106805562973 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430823 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_4459 0 0 0 0 1 Ribosome 1 0.500231647291031 1 0.999536705417939 hm5C_site_7480 DeepMRMD:1;iRNA_m5C:0.999536705417939 7481 chr3 66430870 66430870 1 + G A rs61754218 66430873 - 66430853 66430893 41 GCAAGGTTGTATCACCCGGACTCCACAGAGCTACAGCCTGC GCAAGGTTGTATCACCCGGACTCTACAGAGCTACAGCCTGC < 41bp 1 0.329221479813591 1 0.204283863306046 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430873 chr3:66430870 synonymous SNV . 0 24 hm5C_associated_SNPs_4460 0 0 1 0 1 Ribosome 1 0.500231643914051 1 0.999536712171899 hm5C_site_7481 DeepMRMD:1;iRNA_m5C:0.999536712171899 7482 chr3 66430877 66430877 1 + G A rs332374 66430873 - 66430853 66430893 41 GCAAGGTTGTATCACCCGGACTCCACAGAGCTACAGCCTGC GCAAGGTTGTATCACCTGGACTCCACAGAGCTACAGCCTGC < 41bp 1 0.613048709501618 1 0.465258061885834 experiment 0.773902580996764 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430873 chr3:66430877 nonsynonymous SNV 0.001 0 17 hm5C_associated_SNPs_4461 0 0 1 0 1 Ribosome 1 0.500231644007151 1 0.999536711985697 hm5C_site_7482 DeepMRMD:1;iRNA_m5C:0.999536711985697 7483 chr3 73113180 73113180 1 + C T rs2306983 73113185 + 73113165 73113205 41 ATGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTT ATGGGCCTGGGACACTCAGGCCACTTAATCGACCAAAGGTT < 41bp 1 0.161960187371509 1 0.153119742870331 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113185 chr3:73113180 nonsynonymous SNV 0.998 4 16 hm5C_associated_SNPs_4462 0 0 1 0 1 Ribosome 1 0.500231643921146 1 0.999536712157709 hm5C_site_7483 DeepMRMD:1;iRNA_m5C:0.999536712157709 7484 chr3 73113180 73113180 1 + C T rs2306983 73113186 + 73113166 73113206 41 TGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTTT TGGGCCTGGGACACTCAGGCCACTTAATCGACCAAAGGTTT < 41bp 1 0.13261055085497 1 0.0331465601921082 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113186 chr3:73113180 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_4463 0 0 1 0 1 Ribosome 1 0.500231643922465 1 0.99953671215507 hm5C_site_7484 DeepMRMD:1;iRNA_m5C:0.99953671215507 7485 chr3 73113187 73113187 1 + A G rs9823669 73113185 + 73113165 73113205 41 ATGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTT ATGGGCCTGGGACACCCAGGCCGCTTAATCGACCAAAGGTT < 41bp 1 0.228353721323626 1 0.341462641954422 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113185 chr3:73113187 synonymous SNV . 0 23 hm5C_associated_SNPs_4464 0 0 1 0 1 Ribosome 1 0.500231643918662 1 0.999536712162676 hm5C_site_7485 DeepMRMD:1;iRNA_m5C:0.999536712162676 7486 chr3 73113187 73113187 1 + A G rs9823669 73113186 + 73113166 73113206 41 TGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTTT TGGGCCTGGGACACCCAGGCCGCTTAATCGACCAAAGGTTT < 41bp 1 0.159145211123009 1 0.0820370316505432 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113186 chr3:73113187 synonymous SNV . 0 22 hm5C_associated_SNPs_4465 0 0 1 0 1 Ribosome 1 0.500231643923858 1 0.999536712152283 hm5C_site_7486 DeepMRMD:1;iRNA_m5C:0.999536712152283 7487 chr3 99897169 99897169 1 + A C rs575019956 99897188 + 99897168 99897208 41 AACTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAA ACCTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAA < 41bp 1 0.24983763705001 1 0.133858054876328 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897188 chr3:99897169 nonsynonymous SNV 0.999 1 2 hm5C_associated_SNPs_4466 0 0 1 0 1 Ribosome 1 0.500231643924152 1 0.999536712151697 hm5C_site_7487 DeepMRMD:1;iRNA_m5C:0.999536712151697 7488 chr3 100292731 100292731 1 + A G rs111645332 100292742 + 100292722 100292762 41 TTCTGTTATATGCTGGATTACATTTATTGATTTGTGTATGT TTCTGTTATGTGCTGGATTACATTTATTGATTTGTGTATGT < 41bp 1 0.0470110308510188 1 0.0390491187572479 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM45A ENSG00000181458 intronic Human protein_coding chr3:100292742 chr3:100292731 . . 0 10 hm5C_associated_SNPs_4467 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643209023 1 0.999536713581954 hm5C_site_7488 DeepMRMD:1;iRNA_m5C:0.999536713581954 7489 chr3 100292734 100292734 1 + C T rs185054622 100292742 + 100292722 100292762 41 TTCTGTTATATGCTGGATTACATTTATTGATTTGTGTATGT TTCTGTTATATGTTGGATTACATTTATTGATTTGTGTATGT < 41bp 1 0.0391092993524267 1 0.0195134580135345 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM45A ENSG00000181458 intronic Human protein_coding chr3:100292742 chr3:100292734 . . 0 13 hm5C_associated_SNPs_4468 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643720065 1 0.999536712559871 hm5C_site_7489 DeepMRMD:1;iRNA_m5C:0.999536712559871 7490 chr3 101312178 101312178 1 + G T rs137862577 101312197 + 101312177 101312217 41 AGATTTTTTTTTTATGTAAACTGTTGAATATTTGAAATAGT ATATTTTTTTTTTATGTAAACTGTTGAATATTTGAAATAGT < 41bp 1 0.17672702263271 1 0.123548179864883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNP ENSG00000081154 UTR3 Human protein_coding chr3:101312197 chr3:101312178 . . 0 2 hm5C_associated_SNPs_4470 0 0 1 0 0 chromatin 1 0.500231644204466 1 0.999536711591067 hm5C_site_7490 DeepMRMD:1;iRNA_m5C:0.999536711591067 7491 chr3 101498114 101498114 1 + C A rs555572749 101498099 + 101498079 101498119 41 GCGGGGGGCTAGCGGCCTGGCGCTGCGGCGACCGACCGGGG GCGGGGGGCTAGCGGCCTGGCGCTGCGGCGACCGAACGGGG < 41bp 1 0.697236002562279 1 0.515259563922882 experiment 0.605527994875441 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NXPE3 ENSG00000144815 UTR5 Human protein_coding chr3:101498099 chr3:101498114 . . 0 36 hm5C_associated_SNPs_4472 0 0 1 0 1 Ribosome 1 0.50023162589108 0.969480872154236 0.99953674821784 hm5C_site_7491 DeepMRMD:0.969480872154236;iRNA_m5C:0.99953674821784 7492 chr3 108353746 108353746 1 + G A rs200630414 108353763 + 108353743 108353783 41 AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG AAAATTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG < 41bp 1 0.152973852025991 1 0.44898796081543 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108353763 chr3:108353746 nonsynonymous SNV 0.999 0 4 hm5C_associated_SNPs_4473 0 0 0 0 1 Ribosome 1 0.500231643953001 1 0.999536712093999 hm5C_site_7492 DeepMRMD:1;iRNA_m5C:0.999536712093999 7493 chr3 111705816 111705816 1 + G A rs145014452 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGCTTCATGCTGCAATTGCACAACCAGAGAAGGTCGTGGCT < 41bp 1 0.449399868204712 1 0.0729077756404877 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705816 nonsynonymous SNV 0.452 1 22 hm5C_associated_SNPs_4474 0 0 0 0 2 Ribosome 1 0.50023107564268 1 0.99953784871464 hm5C_site_7493 DeepMRMD:1;iRNA_m5C:0.99953784871464 7494 chr3 112713992 112713992 1 + A C rs148441248 112714008 + 112713988 112714028 41 ACAAAGAAAATGAATTTTTTCAAAGTTGGAAAACATTTTAC ACAACGAAAATGAATTTTTTCAAAGTTGGAAAACATTTTAC < 41bp 1 0.567845973798905 1 0.800873160362244 experiment 0.86430805240219 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112714008 chr3:112713992 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_4475 0 0 1 0 1 Ribosome 1 0.50023166291025 0.398253679275512 0.9995366741795 hm5C_site_7494 DeepMRMD:0.398253679275512;iRNA_m5C:0.9995366741795 7495 chr3 113677948 113677948 1 + G A rs151109209 113677933 + 113677913 113677953 41 CCCTGGCTACCTCACAGAGCCGTCATGAGGGTCACGTGAGG CCCTGGCTACCTCACAGAGCCGTCATGAGGGTCACATGAGG < 41bp 1 0.408791328351767 1 0.281673222780228 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZDHHC23 ENSG00000184307 intronic Human protein_coding chr3:113677933 chr3:113677948 . . 0 36 hm5C_associated_SNPs_4476 0 0 1 0 0 Nucleus 1 0.500232015376137 1 0.999535969247727 hm5C_site_7495 DeepMRMD:1;iRNA_m5C:0.999535969247727 7496 chr3 113775921 113775921 1 + A G rs117024146 113775934 + 113775914 113775954 41 TGAGATAAAAGGGCCCCTTTCGACTAGCCTCTGCTGAAAGG TGAGATAGAAGGGCCCCTTTCGACTAGCCTCTGCTGAAAGG < 41bp 1 0.44187191059763 1 0.67712938785553 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient QTRT2 ENSG00000151576 UTR5 Human protein_coding chr3:113775934 chr3:113775921 . . 0 8 hm5C_associated_SNPs_4477 0 0 1 0 1 Nucleus 1 0.500231643915404 0.64574122428894 0.999536712169192 hm5C_site_7496 DeepMRMD:0.64574122428894;iRNA_m5C:0.999536712169192 7497 chr3 113784173 113784173 1 + A T rs569754989 113784180 + 113784160 113784200 41 ACCTGGGCAAAACAGGGGACCACACCATGGATATTCCAGGC ACCTGGGCAAAACTGGGGACCACACCATGGATATTCCAGGC < 41bp 1 0.260945254862976 1 0.304240733385086 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT2 ENSG00000151576 CDS Human protein_coding chr3:113784180 chr3:113784173 synonymous SNV . 0 14 hm5C_associated_SNPs_4478 0 0 1 0 1 Nucleus 1 0.50023164392141 1 0.99953671215718 hm5C_site_7497 DeepMRMD:1;iRNA_m5C:0.99953671215718 7498 chr3 122128757 122128757 1 + T C rs16833120 122128764 + 122128744 122128784 41 AAAGGATGTGGTATGAGGATCCATTTCATAAAGTATGATTT AAAGGATGTGGTACGAGGATCCATTTCATAAAGTATGATTT < 41bp 1 0.0353645961447331 1 0.0547116100788116 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM162A ENSG00000114023 UTR3 Human protein_coding chr3:122128764 chr3:122128757 . . 0 14 hm5C_associated_SNPs_4480 0 0 1 1 0 Ribosome 1 0.500231643922125 1 0.999536712155751 hm5C_site_7498 DeepMRMD:1;iRNA_m5C:0.999536712155751 7499 chr3 122448407 122448407 1 + G A rs150106874 122448401 + 122448381 122448421 41 AAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTA AAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTA < 41bp 1 0.043326728235512 1 0.0884100198745728 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PARP14 ENSG00000173193 UTR3 Human protein_coding chr3:122448401 chr3:122448407 . . 0 27 hm5C_associated_SNPs_4481 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7499 DeepMRMD:1;iRNA_m5C:0.999536712157815 7500 chr3 122448407 122448407 1 + G A rs150106874 122448402 + 122448382 122448422 41 AGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTAC AGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTAC < 41bp 1 0.186412874955949 1 0.240904033184052 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PARP14 ENSG00000173193 UTR3 Human protein_coding chr3:122448402 chr3:122448407 . . 0 26 hm5C_associated_SNPs_4482 0 0 0 0 0 Nucleus 1 0.500231687314052 1 0.999536625371897 hm5C_site_7500 DeepMRMD:1;iRNA_m5C:0.999536625371897 7501 chr3 122513964 122513964 1 + A C rs891406 122513968 + 122513948 122513988 41 CCGCCTCCTGCTGCTCAGGACTATTCTGCGCTGGGCTAGTC CCGCCTCCTGCTGCTCCGGACTATTCTGCGCTGGGCTAGTC < 41bp 1 0.226443868486758 1 0.0319630205631256 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DIRC2 ENSG00000138463 UTR5 Human protein_coding chr3:122513968 chr3:122513964 . . 0 17 hm5C_associated_SNPs_4483 0 0 0 0 0 Endoplasmic reticulum 1 0.500230703078758 1 0.999538593842484 hm5C_site_7501 DeepMRMD:1;iRNA_m5C:0.999538593842484 7502 chr3 122513972 122513972 1 + T C rs117322422 122513968 + 122513948 122513988 41 CCGCCTCCTGCTGCTCAGGACTATTCTGCGCTGGGCTAGTC CCGCCTCCTGCTGCTCAGGACTATCCTGCGCTGGGCTAGTC < 41bp 1 0.192991352076015 1 0.036399245262146 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DIRC2 ENSG00000138463 UTR5 Human protein_coding chr3:122513968 chr3:122513972 . . 0 25 hm5C_associated_SNPs_4484 0 0 1 0 0 Endoplasmic reticulum 1 0.500231978228783 1 0.999536043542435 hm5C_site_7502 DeepMRMD:1;iRNA_m5C:0.999536043542435 7503 chr3 122513974 122513974 1 + T C rs561800780 122513968 + 122513948 122513988 41 CCGCCTCCTGCTGCTCAGGACTATTCTGCGCTGGGCTAGTC CCGCCTCCTGCTGCTCAGGACTATTCCGCGCTGGGCTAGTC < 41bp 1 0.205082604828059 1 0.0411484241485596 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DIRC2 ENSG00000138463 UTR5 Human protein_coding chr3:122513968 chr3:122513974 . . 0 27 hm5C_associated_SNPs_4485 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_7503 DeepMRMD:1;iRNA_m5C:0.999536712157815 7504 chr3 124237498 124237498 1 + C T rs138414893 124237513 + 124237493 124237533 41 ACCCTCGGGGCTCCCTTCTTCTCTACTGGGTGCAATTCGAG ACCCTTGGGGCTCCCTTCTTCTCTACTGGGTGCAATTCGAG < 41bp 1 0.165121071919791 1 0.791957855224609 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control KALRN ENSG00000160145 UTR3 Human protein_coding chr3:124237513 chr3:124237498 . . 0 6 hm5C_associated_SNPs_4486 0 0 0 0 0 nucleoplasm 1 0.500231643921092 0.416084289550782 0.999536712157815 hm5C_site_7504 DeepMRMD:0.416084289550782;iRNA_m5C:0.999536712157815 7505 chr3 125694422 125694422 1 + T C rs187992194 125694437 + 125694417 125694457 41 CCCTGTCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTCT CCCTGCCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTCT < 41bp 1 0.125737004575692 1 0.0615116655826569 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125694437 chr3:125694422 nonsynonymous SNV 0.121 1 6 hm5C_associated_SNPs_4487 0 0 0 0 0 exosome 1 0.500231642500608 1 0.999536714998783 hm5C_site_7505 DeepMRMD:1;iRNA_m5C:0.999536714998783 7506 chr3 125694426 125694426 1 + G A rs148020640 125694437 + 125694417 125694457 41 CCCTGTCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTCT CCCTGTCCCATGGAGAGACGCCTCCGGTGAGAGAGCGGTCT < 41bp 1 0.108926958118693 1 0.060065746307373 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125694437 chr3:125694426 nonsynonymous SNV 0.158 0 10 hm5C_associated_SNPs_4488 0 0 0 0 1 exosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_7506 DeepMRMD:1;iRNA_m5C:0.999536712157818 7507 chr3 125694457 125694457 1 + T C rs61736423 125694437 + 125694417 125694457 41 CCCTGTCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTCT CCCTGTCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTCC < 41bp 1 0.153525784801155 1 0.0931991040706635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125694437 chr3:125694457 synonymous SNV . 0 41 hm5C_associated_SNPs_4489 0 0 0 0 1 exosome 1 0.500231648029416 1 0.999536703941169 hm5C_site_7507 DeepMRMD:1;iRNA_m5C:0.999536703941169 7508 chr3 126707688 126707688 1 + C T rs567137511 126707684 + 126707664 126707704 41 GAACCTGACACTGCTGCGGGCCCACGTCACGGGCCCTGTGG GAACCTGACACTGCTGCGGGCCCATGTCACGGGCCCTGTGG < 41bp 1 0.0541714673125952 1 0.0826447904109955 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707684 chr3:126707688 synonymous SNV . 0 25 hm5C_associated_SNPs_4490 0 0 1 0 0 Ribosome 1 0.500231909340066 1 0.999536181319868 hm5C_site_7508 DeepMRMD:1;iRNA_m5C:0.999536181319868 7509 chr3 126707688 126707688 1 + C T rs567137511 126707685 + 126707665 126707705 41 AACCTGACACTGCTGCGGGCCCACGTCACGGGCCCTGTGGA AACCTGACACTGCTGCGGGCCCATGTCACGGGCCCTGTGGA < 41bp 1 0.0234972970195064 1 0.0913787186145782 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707685 chr3:126707688 synonymous SNV . 0 24 hm5C_associated_SNPs_4491 0 0 1 0 0 Ribosome 1 0.500231576495396 1 0.999536847009208 hm5C_site_7509 DeepMRMD:1;iRNA_m5C:0.999536847009208 7510 chr3 126707688 126707688 1 + C T rs567137511 126707686 + 126707666 126707706 41 ACCTGACACTGCTGCGGGCCCACGTCACGGGCCCTGTGGAG ACCTGACACTGCTGCGGGCCCATGTCACGGGCCCTGTGGAG < 41bp 1 0.220632500773886 1 0.196746557950974 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707686 chr3:126707688 synonymous SNV . 0 23 hm5C_associated_SNPs_4492 0 0 1 0 0 Ribosome 1 0.500308878401593 1 0.999382243196814 hm5C_site_7510 DeepMRMD:1;iRNA_m5C:0.999382243196814 7511 chr3 126707688 126707688 1 + C T rs567137511 126707697 + 126707677 126707717 41 CTGCGGGCCCACGTCACGGGCCCTGTGGAGGACAACGAGAA CTGCGGGCCCATGTCACGGGCCCTGTGGAGGACAACGAGAA < 41bp 1 0.0387343409504894 1 0.0488878190517426 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707697 chr3:126707688 synonymous SNV . 0 12 hm5C_associated_SNPs_4493 0 0 1 0 0 Ribosome 1 0.500231643920556 1 0.999536712158889 hm5C_site_7511 DeepMRMD:1;iRNA_m5C:0.999536712158889 7512 chr3 126707688 126707688 1 + C T rs567137511 126707698 + 126707678 126707718 41 TGCGGGCCCACGTCACGGGCCCTGTGGAGGACAACGAGAAG TGCGGGCCCATGTCACGGGCCCTGTGGAGGACAACGAGAAG < 41bp 1 0.0279319053340528 1 0.0704778432846069 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707698 chr3:126707688 synonymous SNV . 0 11 hm5C_associated_SNPs_4494 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7512 DeepMRMD:1;iRNA_m5C:0.999536712157815 7513 chr3 126707688 126707688 1 + C T rs567137511 126707699 + 126707679 126707719 41 GCGGGCCCACGTCACGGGCCCTGTGGAGGACAACGAGAAGT GCGGGCCCATGTCACGGGCCCTGTGGAGGACAACGAGAAGT < 41bp 1 0.16244741571114 1 0.091795414686203 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707699 chr3:126707688 synonymous SNV . 0 10 hm5C_associated_SNPs_4495 0 0 1 0 0 Ribosome 1 0.500231643270035 1 0.999536713459931 hm5C_site_7513 DeepMRMD:1;iRNA_m5C:0.999536713459931 7514 chr3 126725013 126725013 1 + C T rs61744428 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCGTCTTCTACAACTGCAGCGTTCACCAGTC < 41bp 1 0.274159827682311 1 0.282576471567154 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126725013 synonymous SNV . 0 33 hm5C_associated_SNPs_4496 0 0 1 0 2 Ribosome 1 0.500245675405154 1 0.999508649189692 hm5C_site_7514 DeepMRMD:1;iRNA_m5C:0.999508649189692 7515 chr3 126741041 126741041 1 + C G rs150052583 126741032 + 126741012 126741052 41 CTGGAGGCACAGCGCAGCTTCTCCATGCGCGACCGCGGGAA CTGGAGGCACAGCGCAGCTTCTCCATGCGGGACCGCGGGAA < 41bp 1 0.658535477045821 1 0.96417772769928 experiment 0.682929045908358 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126741032 chr3:126741041 synonymous SNV . 0 30 hm5C_associated_SNPs_4497 0 0 1 0 0 Ribosome 1 0.50022210861614 0.07164454460144 0.99955578276772 hm5C_site_7515 DeepMRMD:0.07164454460144;iRNA_m5C:0.99955578276772 7516 chr3 126755879 126755879 1 + G A rs374309007 126755898 + 126755878 126755918 41 CGGCTCGGCCTTGCTGAGAGCCTCCGCCCTGGCTTTCTCCC CAGCTCGGCCTTGCTGAGAGCCTCCGCCCTGGCTTTCTCCC < 41bp 1 0.0587425199618635 1 0.0416223108768463 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA1 ENSG00000114554 UTR3 Human protein_coding chr3:126755898 chr3:126755879 . . 0 2 hm5C_associated_SNPs_4498 0 0 1 0 0 Ribosome 1 0.500231643921114 1 0.999536712157771 hm5C_site_7516 DeepMRMD:1;iRNA_m5C:0.999536712157771 7517 chr3 127340583 127340583 1 + C A rs6794323 127340602 + 127340582 127340622 41 ACCTGAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT AACTGAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT < 41bp 1 0.570421235901482 1 0.874672174453735 experiment 0.859157528197037 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127340602 chr3:127340583 nonsynonymous SNV 0.993 4 2 hm5C_associated_SNPs_4500 0 0 1 0 1 Cytosol 1 0.500231643927879 0.25065565109253 0.999536712144243 hm5C_site_7517 DeepMRMD:0.25065565109253;iRNA_m5C:0.999536712144243 7518 chr3 127340590 127340590 1 + A C rs142055220 127340602 + 127340582 127340622 41 ACCTGAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT ACCTGAAACGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT < 41bp 1 0.635219876296334 1 0.854683399200439 experiment 0.729560247407331 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127340602 chr3:127340590 synonymous SNV . 0 9 hm5C_associated_SNPs_4501 0 0 1 0 1 Cytosol 1 0.500231653489729 0.290633201599122 0.999536693020542 hm5C_site_7518 DeepMRMD:0.290633201599122;iRNA_m5C:0.999536693020542 7519 chr3 127391419 127391419 1 + C T rs10049266 127391423 + 127391403 127391443 41 CAGCCCCGCGCCTACCCGGGCCGCCCCCGCGGCCTGGCCCT CAGCCCCGCGCCTACCTGGGCCGCCCCCGCGGCCTGGCCCT < 41bp 1 0.264854331381164 1 0.0450578033924103 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PODXL2 ENSG00000114631 UTR3 Human protein_coding chr3:127391423 chr3:127391419 . . 0 17 hm5C_associated_SNPs_4502 0 0 1 0 0 chromatin 1 0.500231331328721 1 0.999537337342557 hm5C_site_7519 DeepMRMD:1;iRNA_m5C:0.999537337342557 7520 chr3 127771241 127771241 1 + C G rs571322395 127771252 + 127771232 127771272 41 CGGCCCCGCCCCGCGCCGCGCCGCGCCGCTTGCCGCCGGGC CGGCCCCGCGCCGCGCCGCGCCGCGCCGCTTGCCGCCGGGC < 41bp 1 0.671406137162762 1 0.334753572940826 experiment 0.657187725674476 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC61A1 ENSG00000058262 UTR5 Human protein_coding chr3:127771252 chr3:127771241 . . 0 10 hm5C_associated_SNPs_4504 0 0 0 0 0 Ribosome 1 0.500231643919873 1 0.999536712160254 hm5C_site_7520 DeepMRMD:1;iRNA_m5C:0.999536712160254 7521 chr3 127771241 127771241 1 + C G rs571322395 127771257 + 127771237 127771277 41 CCGCCCCGCGCCGCGCCGCGCCGCTTGCCGCCGGGCTAGCA CCGCGCCGCGCCGCGCCGCGCCGCTTGCCGCCGGGCTAGCA < 41bp 1 0.583122790749376 1 0.155075013637543 experiment 0.833754418501247 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC61A1 ENSG00000058262 UTR5 Human protein_coding chr3:127771257 chr3:127771241 . . 0 5 hm5C_associated_SNPs_4506 0 0 0 0 0 Ribosome 1 0.500226257944543 1 0.999547484110914 hm5C_site_7521 DeepMRMD:1;iRNA_m5C:0.999547484110914 7522 chr3 127771264 127771264 1 + C G rs547385728 127771252 + 127771232 127771272 41 CGGCCCCGCCCCGCGCCGCGCCGCGCCGCTTGCCGCCGGGC CGGCCCCGCCCCGCGCCGCGCCGCGCCGCTTGGCGCCGGGC < 41bp 1 0.625089442934427 1 0.154852271080017 experiment 0.749821114131147 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC61A1 ENSG00000058262 UTR5 Human protein_coding chr3:127771252 chr3:127771264 . . 0 33 hm5C_associated_SNPs_4509 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7522 DeepMRMD:1;iRNA_m5C:0.999536712157815 7523 chr3 127771264 127771264 1 + C G rs547385728 127771253 + 127771233 127771273 41 GGCCCCGCCCCGCGCCGCGCCGCGCCGCTTGCCGCCGGGCT GGCCCCGCCCCGCGCCGCGCCGCGCCGCTTGGCGCCGGGCT < 41bp 1 0.696801858611282 1 0.686471462249756 experiment 0.606396282777437 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC61A1 ENSG00000058262 UTR5 Human protein_coding chr3:127771253 chr3:127771264 . . 0 32 hm5C_associated_SNPs_4510 0 0 1 0 0 Ribosome 1 0.500231643921093 0.627057075500488 0.999536712157815 hm5C_site_7523 DeepMRMD:0.627057075500488;iRNA_m5C:0.999536712157815 7524 chr3 127771264 127771264 1 + C G rs547385728 127771257 + 127771237 127771277 41 CCGCCCCGCGCCGCGCCGCGCCGCTTGCCGCCGGGCTAGCA CCGCCCCGCGCCGCGCCGCGCCGCTTGGCGCCGGGCTAGCA < 41bp 1 0.571111048392189 1 0.155615389347076 experiment 0.857777903215622 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC61A1 ENSG00000058262 UTR5 Human protein_coding chr3:127771257 chr3:127771264 . . 0 28 hm5C_associated_SNPs_4511 0 0 1 0 0 Ribosome 1 0.500231643921118 1 0.999536712157765 hm5C_site_7524 DeepMRMD:1;iRNA_m5C:0.999536712157765 7525 chr3 127790143 127790143 1 + A G rs78722933 127790162 + 127790142 127790182 41 CAGGGGAGAGGCTCTTGAGACCTGATGCCCTCCTACCCACA CGGGGGAGAGGCTCTTGAGACCTGATGCCCTCCTACCCACA < 41bp 1 0.633532130463713 1 0.282819092273712 experiment 0.732935739072574 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC61A1 ENSG00000058262 UTR3 Human protein_coding chr3:127790162 chr3:127790143 . . 0 2 hm5C_associated_SNPs_4512 0 0 1 0 0 Ribosome 1 0.500231643920991 1 0.999536712158019 hm5C_site_7525 DeepMRMD:1;iRNA_m5C:0.999536712158019 7526 chr3 128631481 128631481 1 + G A rs9830739 128631476 + 128631456 128631496 41 GGGACAGTGTCCCCTGCTACCGCCCGCCCCTACCCATGGCC GGGACAGTGTCCCCTGCTACCGCCCACCCCTACCCATGGCC < 41bp 1 0.545050429264251 1 0.731376767158508 experiment 0.909899141471499 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACAD9 ENSG00000177646 UTR3 Human protein_coding chr3:128631476 chr3:128631481 . 0.000 0 26 hm5C_associated_SNPs_4514 1 0 0 0 0 Endoplasmic reticulum 1 0.500231643946375 0.537246465682984 0.999536712107249 hm5C_site_7526 DeepMRMD:0.537246465682984;iRNA_m5C:0.999536712107249 Acyl-CoA dehydrogenase family, member 9, deficiency of Acyl-CoA dehydrogenase family, member 9, deficiency of 7527 chr3 132226100 132226100 1 + A G rs79953286 132226097 + 132226077 132226117 41 AAAGGGTGATTGTGACAAAACTTATGGATCAGAATTTGTCT AAAGGGTGATTGTGACAAAACTTGTGGATCAGAATTTGTCT < 41bp 1 0.141753165572312 1 0.0961592495441437 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNAJC13 ENSG00000138246 CDS Human protein_coding chr3:132226097 chr3:132226100 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_4516 0 1 0 0 1 Nucleus 1 0.50023164394759 1 0.99953671210482 hm5C_site_7527 DeepMRMD:1;iRNA_m5C:0.99953671210482 7528 chr3 133306286 133306286 1 + C T rs77613106 133306304 + 133306284 133306324 41 CTCGAGTTTCTTTACCTGATCTAATCAGATCCACTCCCACA CTTGAGTTTCTTTACCTGATCTAATCAGATCCACTCCCACA < 41bp 1 0.316107705272473 1 0.0225623250007629 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDV3 ENSG00000091527 UTR3 Human protein_coding chr3:133306304 chr3:133306286 . . 0 3 hm5C_associated_SNPs_4517 0 0 1 0 0 Ribosome 1 0.500231643920672 1 0.999536712158655 hm5C_site_7528 DeepMRMD:1;iRNA_m5C:0.999536712158655 7529 chr3 136002730 136002730 1 + C T rs371155999 136002747 + 136002727 136002767 41 GGCCCATGTGCTGGTGGGGCCGTCTACTCCCCAGCCCTAAC GGCTCATGTGCTGGTGGGGCCGTCTACTCCCCAGCCCTAAC < 41bp 1 0.196602681772746 1 0.391293734312057 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCCB ENSG00000114054 CDS Human protein_coding chr3:136002747 chr3:136002730 nonsynonymous SNV 0.990 5 4 hm5C_associated_SNPs_4519 1 0 1 0 2 Ribosome 1 0.500231643920238 1 0.999536712159525 hm5C_site_7529 DeepMRMD:1;iRNA_m5C:0.999536712159525 Propionic acidemia Propionic acidemia 7530 chr3 136002738 136002738 1 + T C rs141340198 136002747 + 136002727 136002767 41 GGCCCATGTGCTGGTGGGGCCGTCTACTCCCCAGCCCTAAC GGCCCATGTGCCGGTGGGGCCGTCTACTCCCCAGCCCTAAC < 41bp 1 0.228229531979443 1 0.383101344108582 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCCB ENSG00000114054 CDS Human protein_coding chr3:136002747 chr3:136002738 synonymous SNV . 0 12 hm5C_associated_SNPs_4520 1 0 1 0 2 Ribosome 1 0.500231645280209 1 0.999536709439582 hm5C_site_7530 DeepMRMD:1;iRNA_m5C:0.999536709439582 Propionic acidemia Propionic acidemia 7531 chr3 136729588 136729588 1 + T C rs139997357 136729568 + 136729548 136729588 41 ACTGGGTGGCTTGGAGAGCCCACTTTCCCAGAATAATCCTT ACTGGGTGGCTTGGAGAGCCCACTTTCCCAGAATAATCCTC < 41bp 1 0.455544691401237 1 0.0410149395465851 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IL20RB ENSG00000174564 UTR3 Human protein_coding chr3:136729568 chr3:136729588 . . 0 41 hm5C_associated_SNPs_4521 0 0 0 0 0 nucleoplasm 1 0.500231643921095 1 0.99953671215781 hm5C_site_7531 DeepMRMD:1;iRNA_m5C:0.99953671215781 7532 chr3 138119381 138119381 1 + G A rs149904534 138119379 + 138119359 138119399 41 TGAGCTTTGCCTTCCAGATTCCGTACATAGAAACCAGTGCC TGAGCTTTGCCTTCCAGATTCCATACATAGAAACCAGTGCC < 41bp 1 0.13709188203934 1 0.166191399097443 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRAS ENSG00000158186 CDS Human protein_coding chr3:138119379 chr3:138119381 synonymous SNV . 0 23 hm5C_associated_SNPs_4522 0 0 0 0 2 Cytosol 1 0.500231643978586 1 0.999536712042828 hm5C_site_7532 DeepMRMD:1;iRNA_m5C:0.999536712042828 7533 chr3 138123221 138123221 1 + A G rs565603964 138123236 + 138123216 138123256 41 ACCCCATGCCCACCGTGGAGCTGCAACTCCTCGACAGCACT ACCCCGTGCCCACCGTGGAGCTGCAACTCCTCGACAGCACT < 41bp 1 0.673978121793348 1 0.408973455429077 experiment 0.652043756413305 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MRAS ENSG00000158186 UTR3 Human protein_coding chr3:138123236 chr3:138123221 . . 0 6 hm5C_associated_SNPs_4523 0 0 1 0 0 Cytosol 1 0.50023164394362 1 0.999536712112761 hm5C_site_7533 DeepMRMD:1;iRNA_m5C:0.999536712112761 7534 chr3 138123255 138123255 1 + C G rs115538490 138123236 + 138123216 138123256 41 ACCCCATGCCCACCGTGGAGCTGCAACTCCTCGACAGCACT ACCCCATGCCCACCGTGGAGCTGCAACTCCTCGACAGCAGT < 41bp 1 0.663256530464157 1 0.380304276943207 experiment 0.673486939071685 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MRAS ENSG00000158186 UTR3 Human protein_coding chr3:138123236 chr3:138123255 . . 0 40 hm5C_associated_SNPs_4524 0 0 1 0 0 Cytosol 1 0.500231644378022 1 0.999536711243957 hm5C_site_7534 DeepMRMD:1;iRNA_m5C:0.999536711243957 7535 chr3 140140037 140140037 1 + C T rs141120664 140140054 + 140140034 140140074 41 CTACGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG CTATGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG < 41bp 1 0.235607130994778 1 0.33832323551178 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140140054 chr3:140140037 synonymous SNV . 0 4 hm5C_associated_SNPs_4526 0 0 0 0 2 exosome 1 0.500231643913004 1 0.999536712173992 hm5C_site_7535 DeepMRMD:1;iRNA_m5C:0.999536712173992 7536 chr3 141006162 141006162 1 + G A rs34601454 141006161 + 141006141 141006181 41 CTATCATCTCTCTAGGAAACCGTATCACCCAAAACTGGAAG CTATCATCTCTCTAGGAAACCATATCACCCAAAACTGGAAG < 41bp 1 0.0934181763099173 1 0.0621080696582794 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:141006161 chr3:141006162 synonymous SNV . 0 22 hm5C_associated_SNPs_4527 0 0 0 0 1 Ribosome 1 0.50023164392096 1 0.999536712158081 hm5C_site_7536 DeepMRMD:1;iRNA_m5C:0.999536712158081 7537 chr3 142408606 142408606 1 + G A rs6793735 142408604 + 142408584 142408624 41 CTAATTTGTTTAACACATACCCGTGCCTGCACAAGCCGAAT CTAATTTGTTTAACACATACCCATGCCTGCACAAGCCGAAT < 41bp 1 0.0834358484418906 1 0.0639969408512115 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142408604 chr3:142408606 synonymous SNV . 0 23 hm5C_associated_SNPs_4529 0 0 0 0 1 Nucleus 1 0.500231639790892 1 0.999536720418217 hm5C_site_7537 DeepMRMD:1;iRNA_m5C:0.999536720418217 7538 chr3 142741813 142741813 1 + C T rs190778086 142741800 + 142741780 142741820 41 TATGATGGAACATACGCTTCCCCCACCTCCATCCGGACTGC TATGATGGAACATACGCTTCCCCCACCTCCATCTGGACTGC < 41bp 1 0.565680234048424 1 0.0612162947654724 experiment 0.868639531903151 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142741800 chr3:142741813 synonymous SNV . 0 34 hm5C_associated_SNPs_4530 0 0 1 0 1 Cytosol 1 0.500231709630574 1 0.999536580738853 hm5C_site_7538 DeepMRMD:1;iRNA_m5C:0.999536580738853 7539 chr3 148562272 148562272 1 + G A rs145346983 148562266 + 148562246 148562286 41 CTTCATAATTCACATACAGGCTGTTCGTACCTATGGACGTG CTTCATAATTCACATACAGGCTGTTCATACCTATGGACGTG < 41bp 1 0.136173723914235 1 0.031233936548233 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562266 chr3:148562272 nonsynonymous SNV 0.859 0 27 hm5C_associated_SNPs_4531 0 0 0 0 1 exosome 1 0.500231643929506 1 0.999536712140989 hm5C_site_7539 DeepMRMD:1;iRNA_m5C:0.999536712140989 7540 chr3 148562272 148562272 1 + G A rs145346983 148562271 + 148562251 148562291 41 TAATTCACATACAGGCTGTTCGTACCTATGGACGTGAGATC TAATTCACATACAGGCTGTTCATACCTATGGACGTGAGATC < 41bp 1 0.0625091836148347 1 0.0674809217453003 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562271 chr3:148562272 nonsynonymous SNV 0.859 0 22 hm5C_associated_SNPs_4532 0 0 0 0 1 exosome 1 0.500192924557266 1 0.999614150885468 hm5C_site_7540 DeepMRMD:1;iRNA_m5C:0.999614150885468 7541 chr3 148562272 148562272 1 + G A rs145346983 148562275 + 148562255 148562295 41 TCACATACAGGCTGTTCGTACCTATGGACGTGAGATCCAAG TCACATACAGGCTGTTCATACCTATGGACGTGAGATCCAAG < 41bp 1 0.067199374583852 1 0.026767760515213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562275 chr3:148562272 nonsynonymous SNV 0.859 0 18 hm5C_associated_SNPs_4533 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7541 DeepMRMD:1;iRNA_m5C:0.999536712157815 7542 chr3 148562272 148562272 1 + G A rs145346983 148562276 + 148562256 148562296 41 CACATACAGGCTGTTCGTACCTATGGACGTGAGATCCAAGT CACATACAGGCTGTTCATACCTATGGACGTGAGATCCAAGT < 41bp 1 0.317406113434418 1 0.0970613658428192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562276 chr3:148562272 nonsynonymous SNV 0.859 0 17 hm5C_associated_SNPs_4534 0 0 0 0 1 exosome 1 0.500231644141938 1 0.999536711716124 hm5C_site_7542 DeepMRMD:1;iRNA_m5C:0.999536711716124 7543 chr3 148562272 148562272 1 + G A rs145346983 148562283 + 148562263 148562303 41 AGGCTGTTCGTACCTATGGACGTGAGATCCAAGTGACAGAG AGGCTGTTCATACCTATGGACGTGAGATCCAAGTGACAGAG < 41bp 1 0.647785599684325 1 0.155569076538086 experiment 0.70442880063135 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562283 chr3:148562272 nonsynonymous SNV 0.859 0 10 hm5C_associated_SNPs_4535 0 0 0 0 1 exosome 1 0.50023164381075 1 0.9995367123785 hm5C_site_7543 DeepMRMD:1;iRNA_m5C:0.9995367123785 7544 chr3 148562272 148562272 1 + G A rs145346983 148562291 + 148562271 148562311 41 CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGA CATACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGA < 41bp 1 0.232551419107996 1 0.423721015453339 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562291 chr3:148562272 nonsynonymous SNV 0.859 0 2 hm5C_associated_SNPs_4536 0 0 0 0 1 exosome 1 0.500224074386267 1 0.999551851227466 hm5C_site_7544 DeepMRMD:1;iRNA_m5C:0.999551851227466 7545 chr3 148562309 148562309 1 + C T rs147755306 148562291 + 148562271 148562311 41 CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGA CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTTGA < 41bp 1 0.231918132743792 1 0.265480667352676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562291 chr3:148562309 synonymous SNV . 0 39 hm5C_associated_SNPs_4538 0 0 0 0 2 exosome 1 0.500230272486957 1 0.999539455026086 hm5C_site_7545 DeepMRMD:1;iRNA_m5C:0.999539455026086 7546 chr3 148562309 148562309 1 + C T rs147755306 148562299 + 148562279 148562319 41 TGGACGTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAG TGGACGTGAGATCCAAGTGACAGAGCTTCTTGACAAGTTAG < 41bp 1 0.459749215712845 1 0.362726747989655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562299 chr3:148562309 synonymous SNV . 0 31 hm5C_associated_SNPs_4540 0 0 0 0 2 exosome 1 0.50023164395054 1 0.999536712098921 hm5C_site_7546 DeepMRMD:1;iRNA_m5C:0.999536712098921 7547 chr3 148562309 148562309 1 + C T rs147755306 148562304 + 148562284 148562324 41 GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTT GTGAGATCCAAGTGACAGAGCTTCTTGACAAGTTAGACTTT < 41bp 1 0.127766500719652 1 0.0945422649383545 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562304 chr3:148562309 synonymous SNV . 0 26 hm5C_associated_SNPs_4541 0 0 0 0 2 exosome 1 0.50023164803219 1 0.99953670393562 hm5C_site_7547 DeepMRMD:1;iRNA_m5C:0.99953670393562 7548 chr3 148562309 148562309 1 + C T rs147755306 148562307 + 148562287 148562327 41 AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTAT AGATCCAAGTGACAGAGCTTCTTGACAAGTTAGACTTTTAT < 41bp 1 0.345501375606163 1 0.416341453790665 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562307 chr3:148562309 synonymous SNV . 0 23 hm5C_associated_SNPs_4542 0 0 0 0 2 exosome 1 0.50023124390976 1 0.99953751218048 hm5C_site_7548 DeepMRMD:1;iRNA_m5C:0.99953751218048 7549 chr3 148562309 148562309 1 + C T rs147755306 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTTGACAAGTTAGACTTTTATGTCCT < 41bp 1 0.556382944056713 1 0.219128131866455 experiment 0.887234111886574 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562309 synonymous SNV . 0 18 hm5C_associated_SNPs_4543 0 0 0 0 2 exosome 1 0.500231643936711 1 0.999536712126577 hm5C_site_7549 DeepMRMD:1;iRNA_m5C:0.999536712126577 7550 chr3 148562309 148562309 1 + C T rs147755306 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTTGACAAGTTAGACTTTTATGTCCTGCCTGTGCT < 41bp 1 0.10126691644091 1 0.0383730232715607 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562309 synonymous SNV . 0 9 hm5C_associated_SNPs_4544 0 0 0 0 2 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_7550 DeepMRMD:1;iRNA_m5C:0.999536712157814 7551 chr3 148562310 148562310 1 + G A rs1059502 148562291 + 148562271 148562311 41 CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCGA CGTACCTATGGACGTGAGATCCAAGTGACAGAGCTTCTCAA < 41bp 1 0.273997272601768 1 0.327300429344177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562291 chr3:148562310 nonsynonymous SNV 0.415 0 40 hm5C_associated_SNPs_4545 0 1 0 0 2 exosome 1 0.500231644151361 1 0.999536711697279 hm5C_site_7551 DeepMRMD:1;iRNA_m5C:0.999536711697279 7552 chr3 148562310 148562310 1 + G A rs1059502 148562299 + 148562279 148562319 41 TGGACGTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAG TGGACGTGAGATCCAAGTGACAGAGCTTCTCAACAAGTTAG < 41bp 1 0.497580205403288 1 0.264892816543579 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562299 chr3:148562310 nonsynonymous SNV 0.415 0 32 hm5C_associated_SNPs_4547 0 1 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7552 DeepMRMD:1;iRNA_m5C:0.999536712157815 7553 chr3 148562310 148562310 1 + G A rs1059502 148562304 + 148562284 148562324 41 GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTT GTGAGATCCAAGTGACAGAGCTTCTCAACAAGTTAGACTTT < 41bp 1 0.0947583240450961 1 0.11014586687088 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562304 chr3:148562310 nonsynonymous SNV 0.415 0 27 hm5C_associated_SNPs_4548 0 1 0 0 2 exosome 1 0.500231647999449 1 0.999536704001103 hm5C_site_7553 DeepMRMD:1;iRNA_m5C:0.999536704001103 7554 chr3 148562310 148562310 1 + G A rs1059502 148562307 + 148562287 148562327 41 AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTAT AGATCCAAGTGACAGAGCTTCTCAACAAGTTAGACTTTTAT < 41bp 1 0.420682297110384 1 0.475427240133286 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562307 chr3:148562310 nonsynonymous SNV 0.415 0 24 hm5C_associated_SNPs_4549 0 1 0 0 2 exosome 1 0.500231643919845 1 0.999536712160311 hm5C_site_7554 DeepMRMD:1;iRNA_m5C:0.999536712160311 7555 chr3 148562310 148562310 1 + G A rs1059502 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTCAACAAGTTAGACTTTTATGTCCT < 41bp 1 0.520966714462348 1 0.195338875055313 experiment 0.958066571075305 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562310 nonsynonymous SNV 0.415 0 19 hm5C_associated_SNPs_4551 0 1 0 0 2 exosome 1 0.500231643621993 1 0.999536712756013 hm5C_site_7555 DeepMRMD:1;iRNA_m5C:0.999536712756013 7556 chr3 148562310 148562310 1 + G A rs1059502 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTCAACAAGTTAGACTTTTATGTCCTGCCTGTGCT < 41bp 1 0.0808121956611886 1 0.0274061858654022 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562310 nonsynonymous SNV 0.415 0 10 hm5C_associated_SNPs_4552 0 1 0 0 2 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_7556 DeepMRMD:1;iRNA_m5C:0.999536712157814 7557 chr3 148562310 148562310 1 + G A rs1059502 148562330 + 148562310 148562350 41 GACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA AACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA < 41bp 1 0.0810844559315225 1 0.0561227202415466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562330 chr3:148562310 nonsynonymous SNV 0.415 0 1 hm5C_associated_SNPs_4553 0 1 0 0 2 exosome 1 0.500231643927494 1 0.999536712145012 hm5C_site_7557 DeepMRMD:1;iRNA_m5C:0.999536712145012 7558 chr3 150347490 150347490 1 + C T rs116450267 150347492 + 150347472 150347512 41 ATTCAGCTGTGTTGTTGACGCTCATCTCTTTTGTCTTACGC ATTCAGCTGTGTTGTTGATGCTCATCTCTTTTGTCTTACGC < 41bp 1 0.430404582754189 1 0.17667943239212 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SELENOT ENSG00000198843 UTR3 Human protein_coding chr3:150347492 chr3:150347490 . . 0 19 hm5C_associated_SNPs_4554 0 0 1 2 0 unknown 1 0.500231615092727 1 0.999536769814547 hm5C_site_7558 DeepMRMD:1;iRNA_m5C:0.999536769814547 7559 chr3 150347494 150347494 1 + C T rs181294307 150347492 + 150347472 150347512 41 ATTCAGCTGTGTTGTTGACGCTCATCTCTTTTGTCTTACGC ATTCAGCTGTGTTGTTGACGCTTATCTCTTTTGTCTTACGC < 41bp 1 0.238443322158357 1 0.17833799123764 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SELENOT ENSG00000198843 UTR3 Human protein_coding chr3:150347492 chr3:150347494 . . 0 23 hm5C_associated_SNPs_4555 0 0 1 1 0 unknown 1 0.500231600623965 1 0.999536798752069 hm5C_site_7559 DeepMRMD:1;iRNA_m5C:0.999536798752069 7560 chr3 150905912 150905912 1 + G A rs147950629 150905929 + 150905909 150905949 41 CGCGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGGGTCG CGCACCCGATCTCGTCTGATCTCGGAAGCTAAGCAGGGTCG < 41bp 1 0.302436565710898 1 0.496202349662781 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MED12L ENSG00000199994 ncRNA_exonic Human rRNA chr3:150905929 chr3:150905912 . . 0 4 hm5C_associated_SNPs_4556 0 0 1 0 0 exosome 1 0.500231643995584 1 0.999536712008832 hm5C_site_7560 DeepMRMD:1;iRNA_m5C:0.999536712008832 7561 chr3 150905912 150905912 1 + G A rs147950629 150905931 + 150905911 150905951 41 CGCCCGATCTCGTCTGATCTCGGAAGCTAAGCAGGGTCGGG CACCCGATCTCGTCTGATCTCGGAAGCTAAGCAGGGTCGGG < 41bp 1 0.379209427245412 1 0.720813393592834 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MED12L ENSG00000199994 ncRNA_exonic Human rRNA chr3:150905931 chr3:150905912 . . 0 2 hm5C_associated_SNPs_4557 0 0 1 0 0 exosome 1 0.500231643917166 0.558373212814332 0.999536712165668 hm5C_site_7561 DeepMRMD:0.558373212814332;iRNA_m5C:0.999536712165668 7562 chr3 150905972 150905972 1 + A G rs117883161 150905952 + 150905932 150905972 41 GGAAGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATGGA GGAAGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATGGG < 41bp 1 0.0441794174079731 1 0.186518609523773 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control MED12L ENSG00000199994 ncRNA_exonic Human rRNA chr3:150905952 chr3:150905972 . . 0 41 hm5C_associated_SNPs_4558 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7562 DeepMRMD:1;iRNA_m5C:0.999536712157815 7563 chr3 150905972 150905972 1 + A G rs117883161 150905953 + 150905933 150905973 41 GAAGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATGGAG GAAGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATGGGG < 41bp 1 0.163241402030203 1 0.183733105659485 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control MED12L ENSG00000199994 ncRNA_exonic Human rRNA chr3:150905953 chr3:150905972 . . 0 40 hm5C_associated_SNPs_4559 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7563 DeepMRMD:1;iRNA_m5C:0.999536712157815 7564 chr3 150905972 150905972 1 + A G rs117883161 150905963 + 150905943 150905983 41 AGGGTCGGGCCTGGTTAGTACTTGGATGGAGAAATTATATT AGGGTCGGGCCTGGTTAGTACTTGGATGGGGAAATTATATT < 41bp 1 0.0785924993758532 1 0.0652620494365692 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control MED12L ENSG00000199994 ncRNA_exonic Human rRNA chr3:150905963 chr3:150905972 . . 0 30 hm5C_associated_SNPs_4560 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7564 DeepMRMD:1;iRNA_m5C:0.999536712157815 White blood cell count 7565 chr3 152882048 152882048 1 + A G rs527369087 152882059 + 152882039 152882079 41 ATGTGATTCAGGGCCCCCAGCACCCCTGTGTCTGCAGAGTG ATGTGATTCGGGGCCCCCAGCACCCCTGTGTCTGCAGAGTG < 41bp 1 0.32047639582469 1 0.291238099336624 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP2B ENSG00000181467 UTR3 Human protein_coding chr3:152882059 chr3:152882048 . . 0 10 hm5C_associated_SNPs_4563 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_7565 DeepMRMD:1;iRNA_m5C:0.999536712157817 7566 chr3 153974854 153974854 1 + G A rs148433801 153974868 + 153974848 153974888 41 CTGTCCGCTAACTAGTTATCCAAATTGTAAAGCTACAGAAG CTGTCCACTAACTAGTTATCCAAATTGTAAAGCTACAGAAG < 41bp 1 0.39995189335455 1 0.398582309484482 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF26 ENSG00000114790 UTR3 Human protein_coding chr3:153974868 chr3:153974854 . . 0 7 hm5C_associated_SNPs_4564 0 0 1 0 0 chromatin 1 0.500231643897465 1 0.99953671220507 hm5C_site_7566 DeepMRMD:1;iRNA_m5C:0.99953671220507 7567 chr3 155628652 155628652 1 + G C rs190756684 155628644 + 155628624 155628664 41 CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGTC CTTGAGTGTATTCGAGAGATCAAAGAGACAGTAGGCACGTC < 41bp 1 0.520858670930272 1 0.435214102268219 experiment 0.958282658139456 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628644 chr3:155628652 nonsynonymous SNV 0.986 0 29 hm5C_associated_SNPs_4565 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157813 hm5C_site_7567 DeepMRMD:1;iRNA_m5C:0.999536712157813 7568 chr3 155628662 155628662 1 + G A rs35910218 155628644 + 155628624 155628664 41 CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGTC CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACATC < 41bp 1 0.508760838462018 1 0.347856760025024 experiment 0.982478323075965 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628644 chr3:155628662 synonymous SNV . 0 39 hm5C_associated_SNPs_4566 0 0 1 0 1 Nucleus 1 0.50023164392111 1 0.999536712157781 hm5C_site_7568 DeepMRMD:1;iRNA_m5C:0.999536712157781 7569 chr3 156392386 156392386 1 + G C rs78979395 156392385 + 156392365 156392405 41 AAGCCACTTAAAGCAGAGATCGAGGTGACAGGCGAGCTGGC AAGCCACTTAAAGCAGAGATCCAGGTGACAGGCGAGCTGGC < 41bp 1 0.600294226038797 1 0.85209846496582 experiment 0.799411547922406 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TIPARP-AS1 ENSG00000163659 UTR5 Human protein_coding chr3:156392385 chr3:156392386 . . 0 22 hm5C_associated_SNPs_4567 0 0 0 0 0 unknown 1 0.500232071490813 0.29580307006836 0.999535857018375 hm5C_site_7569 DeepMRMD:0.29580307006836;iRNA_m5C:0.999535857018375 7570 chr3 156423933 156423933 1 + G A rs187348713 156423929 + 156423909 156423949 41 TGTCAGATACAGCTGGGTTCCCTGGCTGACTCTGTACCTTA TGTCAGATACAGCTGGGTTCCCTGACTGACTCTGTACCTTA < 41bp 1 0.634298427490599 1 0.0717626214027405 experiment 0.731403145018801 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TIPARP ENSG00000163659 UTR3 Human protein_coding chr3:156423929 chr3:156423933 . . 0 25 hm5C_associated_SNPs_4568 0 0 1 0 0 Nucleus 1 0.500231643920997 1 0.999536712158006 hm5C_site_7570 DeepMRMD:1;iRNA_m5C:0.999536712158006 7571 chr3 158519926 158519926 1 + G C rs577490116 158519940 + 158519920 158519960 41 CTCTCCGTCTCCTGCGGGCGCAATGGAGGAGGAGGATGAGG CTCTCCCTCTCCTGCGGGCGCAATGGAGGAGGAGGATGAGG < 41bp 1 0.448975205436984 1 0.441890835762024 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158519940 chr3:158519926 synonymous SNV . 0 7 hm5C_associated_SNPs_4570 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_7571 DeepMRMD:1;iRNA_m5C:0.999536712157816 7572 chr3 169490043 169490043 1 + G A rs569792232 169490023 + 169490003 169490043 41 CCTCTCCAAAGTGGGGTTTCCGTAGTGTAGTGGTTATCACG CCTCTCCAAAGTGGGGTTTCCGTAGTGTAGTGGTTATCACA < 41bp 1 0.246863959863614 1 0.0800560414791107 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490023 chr3:169490043 . . 0 41 hm5C_associated_SNPs_4574 0 0 1 0 0 Nucleus 1 0.500231644294952 1 0.999536711410097 hm5C_site_7572 DeepMRMD:1;iRNA_m5C:0.999536711410097 7573 chr3 169490043 169490043 1 + G A rs569792232 169490040 + 169490020 169490060 41 TTCCGTAGTGTAGTGGTTATCACGTTCGCCTAACACGCGAA TTCCGTAGTGTAGTGGTTATCACATTCGCCTAACACGCGAA < 41bp 1 0.566411823998052 1 0.583998322486877 experiment 0.867176352003896 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490040 chr3:169490043 . . 0 24 hm5C_associated_SNPs_4575 0 0 1 0 0 Nucleus 1 0.500231643921018 0.832003355026246 0.999536712157965 hm5C_site_7573 DeepMRMD:0.832003355026246;iRNA_m5C:0.999536712157965 7574 chr3 169490043 169490043 1 + G A rs569792232 169490042 + 169490022 169490062 41 CCGTAGTGTAGTGGTTATCACGTTCGCCTAACACGCGAAAG CCGTAGTGTAGTGGTTATCACATTCGCCTAACACGCGAAAG < 41bp 1 0.0926331525381421 1 0.267841637134552 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490042 chr3:169490043 . . 0 22 hm5C_associated_SNPs_4576 0 0 1 0 0 Nucleus 1 0.500231643885601 1 0.999536712228798 hm5C_site_7574 DeepMRMD:1;iRNA_m5C:0.999536712228798 7575 chr3 169490043 169490043 1 + G A rs569792232 169490046 + 169490026 169490066 41 AGTGTAGTGGTTATCACGTTCGCCTAACACGCGAAAGGTCC AGTGTAGTGGTTATCACATTCGCCTAACACGCGAAAGGTCC < 41bp 1 0.421386035055627 1 0.592857718467712 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490046 chr3:169490043 . . 0 18 hm5C_associated_SNPs_4577 0 0 1 0 0 Nucleus 1 0.500231635249698 0.814284563064576 0.999536729500603 hm5C_site_7575 DeepMRMD:0.814284563064576;iRNA_m5C:0.999536729500603 7576 chr3 169490043 169490043 1 + G A rs569792232 169490048 + 169490028 169490068 41 TGTAGTGGTTATCACGTTCGCCTAACACGCGAAAGGTCCCC TGTAGTGGTTATCACATTCGCCTAACACGCGAAAGGTCCCC < 41bp 1 0.170870587945024 1 0.343602061271667 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490048 chr3:169490043 . . 0 16 hm5C_associated_SNPs_4578 0 0 1 0 0 Nucleus 1 0.500231644035088 1 0.999536711929825 hm5C_site_7576 DeepMRMD:1;iRNA_m5C:0.999536711929825 7577 chr3 169490043 169490043 1 + G A rs569792232 169490049 + 169490029 169490069 41 GTAGTGGTTATCACGTTCGCCTAACACGCGAAAGGTCCCCG GTAGTGGTTATCACATTCGCCTAACACGCGAAAGGTCCCCG < 41bp 1 0.107601120699649 1 0.160402089357376 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490049 chr3:169490043 . . 0 15 hm5C_associated_SNPs_4579 0 0 1 0 0 Nucleus 1 0.50023171945491 1 0.99953656109018 hm5C_site_7577 DeepMRMD:1;iRNA_m5C:0.99953656109018 7578 chr3 169490043 169490043 1 + G A rs569792232 169490053 + 169490033 169490073 41 TGGTTATCACGTTCGCCTAACACGCGAAAGGTCCCCGGTTC TGGTTATCACATTCGCCTAACACGCGAAAGGTCCCCGGTTC < 41bp 1 0.51466634533511 1 0.399952441453934 experiment 0.97066730932978 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490053 chr3:169490043 . . 0 11 hm5C_associated_SNPs_4580 0 0 1 0 0 Nucleus 1 0.500231643853121 1 0.999536712293758 hm5C_site_7578 DeepMRMD:1;iRNA_m5C:0.999536712293758 7579 chr3 169490043 169490043 1 + G A rs569792232 169490057 + 169490037 169490077 41 TATCACGTTCGCCTAACACGCGAAAGGTCCCCGGTTCGAAA TATCACATTCGCCTAACACGCGAAAGGTCCCCGGTTCGAAA < 41bp 1 0.676363404215157 1 0.442363709211349 experiment 0.647273191569686 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490057 chr3:169490043 . . 0 7 hm5C_associated_SNPs_4581 0 0 1 0 0 Nucleus 1 0.500231645652408 1 0.999536708695185 hm5C_site_7579 DeepMRMD:1;iRNA_m5C:0.999536708695185 7580 chr3 169490054 169490054 1 + A C rs552675586 169490042 + 169490022 169490062 41 CCGTAGTGTAGTGGTTATCACGTTCGCCTAACACGCGAAAG CCGTAGTGTAGTGGTTATCACGTTCGCCTAACCCGCGAAAG < 41bp 1 0.123865598569739 1 0.211695104837418 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490042 chr3:169490054 . . 0 33 hm5C_associated_SNPs_4582 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_7580 DeepMRMD:1;iRNA_m5C:0.999536712157816 7581 chr3 169490054 169490054 1 + A C rs552675586 169490046 + 169490026 169490066 41 AGTGTAGTGGTTATCACGTTCGCCTAACACGCGAAAGGTCC AGTGTAGTGGTTATCACGTTCGCCTAACCCGCGAAAGGTCC < 41bp 1 0.333105791902221 1 0.52131712436676 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490046 chr3:169490054 . . 0 29 hm5C_associated_SNPs_4583 0 0 1 0 0 Nucleus 1 0.50023163920212 0.95736575126648 0.99953672159576 hm5C_site_7581 DeepMRMD:0.95736575126648;iRNA_m5C:0.99953672159576 7582 chr3 169490054 169490054 1 + A C rs552675586 169490048 + 169490028 169490068 41 TGTAGTGGTTATCACGTTCGCCTAACACGCGAAAGGTCCCC TGTAGTGGTTATCACGTTCGCCTAACCCGCGAAAGGTCCCC < 41bp 1 0.171391290614283 1 0.261842250823975 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490048 chr3:169490054 . . 0 27 hm5C_associated_SNPs_4584 0 0 1 0 0 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_7582 DeepMRMD:1;iRNA_m5C:0.999536712157818 7583 chr3 169490054 169490054 1 + A C rs552675586 169490049 + 169490029 169490069 41 GTAGTGGTTATCACGTTCGCCTAACACGCGAAAGGTCCCCG GTAGTGGTTATCACGTTCGCCTAACCCGCGAAAGGTCCCCG < 41bp 1 0.09759960451671 1 0.316159844398499 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490049 chr3:169490054 . . 0 26 hm5C_associated_SNPs_4585 0 0 1 0 0 Nucleus 1 0.500231515409353 1 0.999536969181295 hm5C_site_7583 DeepMRMD:1;iRNA_m5C:0.999536969181295 7584 chr3 169490054 169490054 1 + A C rs552675586 169490053 + 169490033 169490073 41 TGGTTATCACGTTCGCCTAACACGCGAAAGGTCCCCGGTTC TGGTTATCACGTTCGCCTAACCCGCGAAAGGTCCCCGGTTC < 41bp 1 0.274838430528639 1 0.345695614814758 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490053 chr3:169490054 . . 0 22 hm5C_associated_SNPs_4586 0 0 1 0 0 Nucleus 1 0.500240660586207 1 0.999518678827586 hm5C_site_7584 DeepMRMD:1;iRNA_m5C:0.999518678827586 7585 chr3 169490054 169490054 1 + A C rs552675586 169490057 + 169490037 169490077 41 TATCACGTTCGCCTAACACGCGAAAGGTCCCCGGTTCGAAA TATCACGTTCGCCTAACCCGCGAAAGGTCCCCGGTTCGAAA < 41bp 1 0.549954516647805 1 0.342254340648651 experiment 0.90009096670439 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490057 chr3:169490054 . . 0 18 hm5C_associated_SNPs_4587 0 0 1 0 0 Nucleus 1 0.500231640534411 1 0.999536718931177 hm5C_site_7585 DeepMRMD:1;iRNA_m5C:0.999536718931177 7586 chr3 169490054 169490054 1 + A C rs552675586 169490065 + 169490045 169490085 41 TCGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGG TCGCCTAACCCGCGAAAGGTCCCCGGTTCGAAACCGGGCGG < 41bp 1 0.505926447298859 1 0.182041585445404 experiment 0.988147105402281 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490065 chr3:169490054 . . 0 10 hm5C_associated_SNPs_4588 0 0 1 0 0 Nucleus 1 0.500231643917458 1 0.999536712165083 hm5C_site_7586 DeepMRMD:1;iRNA_m5C:0.999536712165083 7587 chr3 169490054 169490054 1 + A C rs552675586 169490066 + 169490046 169490086 41 CGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGA CGCCTAACCCGCGAAAGGTCCCCGGTTCGAAACCGGGCGGA < 41bp 1 0.475675883999849 1 0.26845771074295 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490066 chr3:169490054 . . 0 9 hm5C_associated_SNPs_4589 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_7587 DeepMRMD:1;iRNA_m5C:0.999536712157815 7588 chr3 169490054 169490054 1 + A C rs552675586 169490067 + 169490047 169490087 41 GCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAA GCCTAACCCGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAA < 41bp 1 0.358415161264838 1 0.21893236041069 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490067 chr3:169490054 . . 0 8 hm5C_associated_SNPs_4590 0 0 1 0 0 Nucleus 1 0.50023187748949 1 0.999536245021019 hm5C_site_7588 DeepMRMD:1;iRNA_m5C:0.999536245021019 7589 chr3 169490054 169490054 1 + A C rs552675586 169490068 + 169490048 169490088 41 CCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA CCTAACCCGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA < 41bp 1 0.177789613451769 1 0.115330278873444 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490068 chr3:169490054 . . 0 7 hm5C_associated_SNPs_4591 0 0 1 0 0 Nucleus 1 0.50023164277681 1 0.999536714446379 hm5C_site_7589 DeepMRMD:1;iRNA_m5C:0.999536714446379 7590 chr3 169490054 169490054 1 + A C rs552675586 169490073 + 169490053 169490093 41 CACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAACACAC CCCGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAACACAC < 41bp 1 0.457919609766144 1 0.492256194353104 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490073 chr3:169490054 . . 0 2 hm5C_associated_SNPs_4592 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7590 DeepMRMD:1;iRNA_m5C:0.999536712157815 7591 chr3 169490055 169490055 1 + C G rs145973490 169490042 + 169490022 169490062 41 CCGTAGTGTAGTGGTTATCACGTTCGCCTAACACGCGAAAG CCGTAGTGTAGTGGTTATCACGTTCGCCTAACAGGCGAAAG < 41bp 1 0.108138221983604 1 0.0812629163265228 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490042 chr3:169490055 . . 0 34 hm5C_associated_SNPs_4594 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7591 DeepMRMD:1;iRNA_m5C:0.999536712157815 7592 chr3 169490055 169490055 1 + C G rs145973490 169490046 + 169490026 169490066 41 AGTGTAGTGGTTATCACGTTCGCCTAACACGCGAAAGGTCC AGTGTAGTGGTTATCACGTTCGCCTAACAGGCGAAAGGTCC < 41bp 1 0.329101029222851 1 0.718765914440155 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490046 chr3:169490055 . . 0 30 hm5C_associated_SNPs_4595 0 0 1 0 0 Nucleus 1 0.500231643920904 0.56246817111969 0.999536712158193 hm5C_site_7592 DeepMRMD:0.56246817111969;iRNA_m5C:0.999536712158193 7593 chr3 169490055 169490055 1 + C G rs145973490 169490048 + 169490028 169490068 41 TGTAGTGGTTATCACGTTCGCCTAACACGCGAAAGGTCCCC TGTAGTGGTTATCACGTTCGCCTAACAGGCGAAAGGTCCCC < 41bp 1 0.200211557004415 1 0.424445420503616 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490048 chr3:169490055 . . 0 28 hm5C_associated_SNPs_4596 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_7593 DeepMRMD:1;iRNA_m5C:0.999536712157815 7594 chr3 169490055 169490055 1 + C G rs145973490 169490049 + 169490029 169490069 41 GTAGTGGTTATCACGTTCGCCTAACACGCGAAAGGTCCCCG GTAGTGGTTATCACGTTCGCCTAACAGGCGAAAGGTCCCCG < 41bp 1 0.120758141210953 1 0.2322096824646 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490049 chr3:169490055 . . 0 27 hm5C_associated_SNPs_4597 0 0 1 0 0 Nucleus 1 0.500231643940161 1 0.999536712119678 hm5C_site_7594 DeepMRMD:1;iRNA_m5C:0.999536712119678 7595 chr3 169490055 169490055 1 + C G rs145973490 169490053 + 169490033 169490073 41 TGGTTATCACGTTCGCCTAACACGCGAAAGGTCCCCGGTTC TGGTTATCACGTTCGCCTAACAGGCGAAAGGTCCCCGGTTC < 41bp 1 0.642588125003444 1 0.876091003417969 experiment 0.714823749993111 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490053 chr3:169490055 . . 0 23 hm5C_associated_SNPs_4598 0 0 1 0 0 Nucleus 1 0.500231642310869 0.247817993164062 0.999536715378262 hm5C_site_7595 DeepMRMD:0.247817993164062;iRNA_m5C:0.999536715378262 7596 chr3 169490055 169490055 1 + C G rs145973490 169490057 + 169490037 169490077 41 TATCACGTTCGCCTAACACGCGAAAGGTCCCCGGTTCGAAA TATCACGTTCGCCTAACAGGCGAAAGGTCCCCGGTTCGAAA < 41bp 1 0.600013879089737 1 0.421901941299438 experiment 0.799972241820527 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490057 chr3:169490055 . . 0 19 hm5C_associated_SNPs_4599 0 0 1 0 0 Nucleus 1 0.500231643918898 1 0.999536712162203 hm5C_site_7596 DeepMRMD:1;iRNA_m5C:0.999536712162203 7597 chr3 169490055 169490055 1 + C G rs145973490 169490065 + 169490045 169490085 41 TCGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGG TCGCCTAACAGGCGAAAGGTCCCCGGTTCGAAACCGGGCGG < 41bp 1 0.505962280462951 1 0.143332213163376 experiment 0.988075439074099 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490065 chr3:169490055 . . 0 11 hm5C_associated_SNPs_4600 0 0 1 0 0 Nucleus 1 0.500227243178062 1 0.999545513643877 hm5C_site_7597 DeepMRMD:1;iRNA_m5C:0.999545513643877 7598 chr3 169490055 169490055 1 + C G rs145973490 169490066 + 169490046 169490086 41 CGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGA CGCCTAACAGGCGAAAGGTCCCCGGTTCGAAACCGGGCGGA < 41bp 1 0.49418379757346 1 0.171078860759735 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490066 chr3:169490055 . . 0 10 hm5C_associated_SNPs_4601 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7598 DeepMRMD:1;iRNA_m5C:0.999536712157815 7599 chr3 169490055 169490055 1 + C G rs145973490 169490067 + 169490047 169490087 41 GCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAA GCCTAACAGGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAA < 41bp 1 0.450188851816204 1 0.176401853561401 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490067 chr3:169490055 . . 0 9 hm5C_associated_SNPs_4602 0 0 1 0 0 Nucleus 1 0.500231643912 1 0.999536712175999 hm5C_site_7599 DeepMRMD:1;iRNA_m5C:0.999536712175999 7600 chr3 169490055 169490055 1 + C G rs145973490 169490068 + 169490048 169490088 41 CCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA CCTAACAGGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA < 41bp 1 0.254243307904496 1 0.0949239432811737 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490068 chr3:169490055 . . 0 8 hm5C_associated_SNPs_4603 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7600 DeepMRMD:1;iRNA_m5C:0.999536712157815 7601 chr3 169490055 169490055 1 + C G rs145973490 169490073 + 169490053 169490093 41 CACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAACACAC CAGGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAACACAC < 41bp 1 0.404900009484881 1 0.385351300239563 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490073 chr3:169490055 . . 0 3 hm5C_associated_SNPs_4604 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7601 DeepMRMD:1;iRNA_m5C:0.999536712157815 7602 chr3 169490062 169490062 1 + G A rs372430905 169490042 + 169490022 169490062 41 CCGTAGTGTAGTGGTTATCACGTTCGCCTAACACGCGAAAG CCGTAGTGTAGTGGTTATCACGTTCGCCTAACACGCGAAAA < 41bp 1 0.113934918609061 1 0.132335484027863 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490042 chr3:169490062 . . 0 41 hm5C_associated_SNPs_4605 0 0 1 0 0 Nucleus 1 0.500231640480565 1 0.99953671903887 hm5C_site_7602 DeepMRMD:1;iRNA_m5C:0.99953671903887 7603 chr3 169490062 169490062 1 + G A rs372430905 169490046 + 169490026 169490066 41 AGTGTAGTGGTTATCACGTTCGCCTAACACGCGAAAGGTCC AGTGTAGTGGTTATCACGTTCGCCTAACACGCGAAAAGTCC < 41bp 1 0.304788282603548 1 0.625380396842957 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490046 chr3:169490062 . . 0 37 hm5C_associated_SNPs_4606 0 0 1 0 0 Nucleus 1 0.50023164392089 0.749239206314086 0.999536712158219 hm5C_site_7603 DeepMRMD:0.749239206314086;iRNA_m5C:0.999536712158219 7604 chr3 169490062 169490062 1 + G A rs372430905 169490048 + 169490028 169490068 41 TGTAGTGGTTATCACGTTCGCCTAACACGCGAAAGGTCCCC TGTAGTGGTTATCACGTTCGCCTAACACGCGAAAAGTCCCC < 41bp 1 0.170485667713443 1 0.453554034233093 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490048 chr3:169490062 . . 0 35 hm5C_associated_SNPs_4607 0 0 1 0 0 Nucleus 1 0.500231643920998 1 0.999536712158005 hm5C_site_7604 DeepMRMD:1;iRNA_m5C:0.999536712158005 7605 chr3 169490062 169490062 1 + G A rs372430905 169490049 + 169490029 169490069 41 GTAGTGGTTATCACGTTCGCCTAACACGCGAAAGGTCCCCG GTAGTGGTTATCACGTTCGCCTAACACGCGAAAAGTCCCCG < 41bp 1 0.095580166997099 1 0.414408445358276 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490049 chr3:169490062 . . 0 34 hm5C_associated_SNPs_4608 0 0 1 0 0 Nucleus 1 0.500231710249468 1 0.999536579501065 hm5C_site_7605 DeepMRMD:1;iRNA_m5C:0.999536579501065 7606 chr3 169490062 169490062 1 + G A rs372430905 169490053 + 169490033 169490073 41 TGGTTATCACGTTCGCCTAACACGCGAAAGGTCCCCGGTTC TGGTTATCACGTTCGCCTAACACGCGAAAAGTCCCCGGTTC < 41bp 1 0.52967054094989 1 0.691196143627167 experiment 0.940658918100219 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490053 chr3:169490062 . . 0 30 hm5C_associated_SNPs_4609 0 0 1 0 0 Nucleus 1 0.50023168271245 0.617607712745666 0.999536634575101 hm5C_site_7606 DeepMRMD:0.617607712745666;iRNA_m5C:0.999536634575101 7607 chr3 169490062 169490062 1 + G A rs372430905 169490057 + 169490037 169490077 41 TATCACGTTCGCCTAACACGCGAAAGGTCCCCGGTTCGAAA TATCACGTTCGCCTAACACGCGAAAAGTCCCCGGTTCGAAA < 41bp 1 0.56816567125336 1 0.462577968835831 experiment 0.86366865749328 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490057 chr3:169490062 . . 0 26 hm5C_associated_SNPs_4610 0 0 1 0 0 Nucleus 1 0.500191391532504 1 0.999617216934993 hm5C_site_7607 DeepMRMD:1;iRNA_m5C:0.999617216934993 7608 chr3 169490062 169490062 1 + G A rs372430905 169490065 + 169490045 169490085 41 TCGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGG TCGCCTAACACGCGAAAAGTCCCCGGTTCGAAACCGGGCGG < 41bp 1 0.566791607127863 1 0.125611931085587 experiment 0.866416785744274 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490065 chr3:169490062 . . 0 18 hm5C_associated_SNPs_4611 0 0 1 0 0 Nucleus 1 0.500231644581288 1 0.999536710837423 hm5C_site_7608 DeepMRMD:1;iRNA_m5C:0.999536710837423 7609 chr3 169490062 169490062 1 + G A rs372430905 169490066 + 169490046 169490086 41 CGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGA CGCCTAACACGCGAAAAGTCCCCGGTTCGAAACCGGGCGGA < 41bp 1 0.52409017117734 1 0.279835015535355 experiment 0.95181965764532 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490066 chr3:169490062 . . 0 17 hm5C_associated_SNPs_4612 0 0 1 0 0 Nucleus 1 0.500231643920603 1 0.999536712158793 hm5C_site_7609 DeepMRMD:1;iRNA_m5C:0.999536712158793 7610 chr3 169490062 169490062 1 + G A rs372430905 169490067 + 169490047 169490087 41 GCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAA GCCTAACACGCGAAAAGTCCCCGGTTCGAAACCGGGCGGAA < 41bp 1 0.360065444638478 1 0.122412204742432 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490067 chr3:169490062 . . 0 16 hm5C_associated_SNPs_4613 0 0 1 0 0 Nucleus 1 0.500231643863935 1 0.999536712272131 hm5C_site_7610 DeepMRMD:1;iRNA_m5C:0.999536712272131 7611 chr3 169490062 169490062 1 + G A rs372430905 169490068 + 169490048 169490088 41 CCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA CCTAACACGCGAAAAGTCCCCGGTTCGAAACCGGGCGGAAA < 41bp 1 0.210499732138107 1 0.0888582468032837 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490068 chr3:169490062 . . 0 15 hm5C_associated_SNPs_4614 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7611 DeepMRMD:1;iRNA_m5C:0.999536712157815 7612 chr3 169490062 169490062 1 + G A rs372430905 169490073 + 169490053 169490093 41 CACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAACACAC CACGCGAAAAGTCCCCGGTTCGAAACCGGGCGGAAACACAC < 41bp 1 0.357728563351056 1 0.413989275693893 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490073 chr3:169490062 . . 0 10 hm5C_associated_SNPs_4615 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7612 DeepMRMD:1;iRNA_m5C:0.999536712157815 7613 chr3 169490062 169490062 1 + G A rs372430905 169490078 + 169490058 169490098 41 GAAAGGTCCCCGGTTCGAAACCGGGCGGAAACACACTAAAA GAAAAGTCCCCGGTTCGAAACCGGGCGGAAACACACTAAAA < 41bp 1 0.379031741697645 1 0.557166874408722 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490078 chr3:169490062 . . 0 5 hm5C_associated_SNPs_4616 0 0 1 0 0 Nucleus 1 0.500231643921254 0.885666251182556 0.999536712157493 hm5C_site_7613 DeepMRMD:0.885666251182556;iRNA_m5C:0.999536712157493 7614 chr3 169490062 169490062 1 + G A rs372430905 169490079 + 169490059 169490099 41 AAAGGTCCCCGGTTCGAAACCGGGCGGAAACACACTAAAAA AAAAGTCCCCGGTTCGAAACCGGGCGGAAACACACTAAAAA < 41bp 1 0.497418459060271 1 0.857511043548584 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490079 chr3:169490062 . . 0 4 hm5C_associated_SNPs_4617 0 0 1 0 0 Nucleus 1 0.500231643921092 0.284977912902832 0.999536712157815 hm5C_site_7614 DeepMRMD:0.284977912902832;iRNA_m5C:0.999536712157815 7615 chr3 169490083 169490083 1 + C A rs139959878 169490065 + 169490045 169490085 41 TCGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGG TCGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGAGG < 41bp 1 0.40243326935254 1 0.123544335365295 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490065 chr3:169490083 . . 0 39 hm5C_associated_SNPs_4618 0 0 1 0 0 Nucleus 1 0.500231643356751 1 0.999536713286498 hm5C_site_7615 DeepMRMD:1;iRNA_m5C:0.999536713286498 7616 chr3 169490083 169490083 1 + C A rs139959878 169490066 + 169490046 169490086 41 CGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGA CGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGAGGA < 41bp 1 0.456975487667191 1 0.168004184961319 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490066 chr3:169490083 . . 0 38 hm5C_associated_SNPs_4619 0 0 1 0 0 Nucleus 1 0.500231643922816 1 0.999536712154368 hm5C_site_7616 DeepMRMD:1;iRNA_m5C:0.999536712154368 7617 chr3 169490083 169490083 1 + C A rs139959878 169490067 + 169490047 169490087 41 GCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAA GCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGAGGAA < 41bp 1 0.349578114081028 1 0.14426600933075 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490067 chr3:169490083 . . 0 37 hm5C_associated_SNPs_4620 0 0 1 0 0 Nucleus 1 0.500231643827935 1 0.999536712344129 hm5C_site_7617 DeepMRMD:1;iRNA_m5C:0.999536712344129 7618 chr3 169490083 169490083 1 + C A rs139959878 169490068 + 169490048 169490088 41 CCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA CCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGAGGAAA < 41bp 1 0.177325987620677 1 0.0625161528587341 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490068 chr3:169490083 . . 0 36 hm5C_associated_SNPs_4621 0 0 1 0 0 Nucleus 1 0.500231643920463 1 0.999536712159074 hm5C_site_7618 DeepMRMD:1;iRNA_m5C:0.999536712159074 7619 chr3 169490083 169490083 1 + C A rs139959878 169490073 + 169490053 169490093 41 CACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAACACAC CACGCGAAAGGTCCCCGGTTCGAAACCGGGAGGAAACACAC < 41bp 1 0.428677228110758 1 0.702474117279053 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490073 chr3:169490083 . . 0 31 hm5C_associated_SNPs_4622 0 0 1 0 0 Nucleus 1 0.500231643921094 0.595051765441894 0.999536712157811 hm5C_site_7619 DeepMRMD:0.595051765441894;iRNA_m5C:0.999536712157811 7620 chr3 169490083 169490083 1 + C A rs139959878 169490078 + 169490058 169490098 41 GAAAGGTCCCCGGTTCGAAACCGGGCGGAAACACACTAAAA GAAAGGTCCCCGGTTCGAAACCGGGAGGAAACACACTAAAA < 41bp 1 0.429806609611385 1 0.49134173989296 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490078 chr3:169490083 . . 0 26 hm5C_associated_SNPs_4623 0 0 1 0 0 Nucleus 1 0.500231643921094 1 0.999536712157811 hm5C_site_7620 DeepMRMD:1;iRNA_m5C:0.999536712157811 7621 chr3 169490083 169490083 1 + C A rs139959878 169490089 + 169490069 169490109 41 GGTTCGAAACCGGGCGGAAACACACTAAAAAATCCCTTTTT GGTTCGAAACCGGGAGGAAACACACTAAAAAATCCCTTTTT < 41bp 1 0.395840450497159 1 0.354088366031647 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MYNN ENSG00000085274;ENSG00000269889 upstream;downstream Human other chr3:169490089 chr3:169490083 . . 0 15 hm5C_associated_SNPs_4624 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7621 DeepMRMD:1;iRNA_m5C:0.999536712157815 7622 chr3 170078470 170078470 1 + G A rs148615745 170078471 + 170078451 170078491 41 ATTCCCAAGAAAGCATGTCGCCTACTGTATTTCTGCCTCTT ATTCCCAAGAAAGCATGTCACCTACTGTATTTCTGCCTCTT < 41bp 1 0.135408304022482 1 0.0236924290657043 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170078471 chr3:170078470 synonymous SNV . 0 20 hm5C_associated_SNPs_4625 0 0 1 0 0 Nucleus 1 0.500231576159616 1 0.999536847680768 hm5C_site_7622 DeepMRMD:1;iRNA_m5C:0.999536847680768 7623 chr3 172098778 172098778 1 + A C rs145541551 172098759 + 172098739 172098779 41 GTGGATTTGTATTTCAGCACCTCGAGTAACACAGTTAGAAG GTGGATTTGTATTTCAGCACCTCGAGTAACACAGTTAGACG < 41bp 1 0.536605716518411 1 0.724094271659851 experiment 0.926788566963177 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172098759 chr3:172098778 nonsynonymous SNV 0.999 1 40 hm5C_associated_SNPs_4626 0 0 0 0 1 Nucleus 1 0.500233180935111 0.551811456680298 0.999533638129777 hm5C_site_7623 DeepMRMD:0.551811456680298;iRNA_m5C:0.999533638129777 7624 chr3 172098778 172098778 1 + A C rs145541551 172098770 + 172098750 172098790 41 TTTCAGCACCTCGAGTAACACAGTTAGAAGGAAATTCATGT TTTCAGCACCTCGAGTAACACAGTTAGACGGAAATTCATGT < 41bp 1 0.100463802647825 1 0.242064535617828 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172098770 chr3:172098778 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_4627 0 0 0 0 1 Nucleus 1 0.50023164325527 1 0.999536713489459 hm5C_site_7624 DeepMRMD:1;iRNA_m5C:0.999536713489459 7625 chr3 179110163 179110163 1 + T C rs547015615 179110165 + 179110145 179110185 41 GATTCTGAAAAACTCTGCTTCCTGGCATCCAGGAGTTAGAG GATTCTGAAAAACTCTGCCTCCTGGCATCCAGGAGTTAGAG < 41bp 1 0.238835825008237 1 0.175767511129379 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFN1 ENSG00000171109 UTR3 Human protein_coding chr3:179110165 chr3:179110163 . . 0 19 hm5C_associated_SNPs_4628 0 0 1 0 0 Ribosome 1 0.500231644044003 1 0.999536711911993 hm5C_site_7625 DeepMRMD:1;iRNA_m5C:0.999536711911993 7626 chr3 180666557 180666557 1 + A T rs3026195 180666572 + 180666552 180666592 41 GGAGCATGCAGAATTTTTTACCATCCAGAAACAACACAGCT GGAGCTTGCAGAATTTTTTACCATCCAGAAACAACACAGCT < 41bp 1 0.0257826522178782 1 0.162357956171036 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180666572 chr3:180666557 synonymous SNV . 0 6 hm5C_associated_SNPs_4629 0 0 0 0 2 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7626 DeepMRMD:1;iRNA_m5C:0.999536712157815 7627 chr3 182586930 182586930 1 + G A rs74891936 182586934 + 182586914 182586954 41 GAGTGTAATTGTTCAGGCACCTTCAGGTAACCAATCTAAAC GAGTGTAATTGTTCAGACACCTTCAGGTAACCAATCTAAAC < 41bp 1 0.359853265522258 1 0.111676663160324 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182586934 chr3:182586930 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_4630 0 0 1 0 2 Endoplasmic reticulum 1 0.500230698299209 1 0.999538603401583 hm5C_site_7627 DeepMRMD:1;iRNA_m5C:0.999538603401583 7628 chr3 182637840 182637840 1 + C T rs16833596 182637823 + 182637803 182637843 41 AAAATCTCTTATAAAACGTGCATATAACAAAATGACACCCA AAAATCTCTTATAAAACGTGCATATAACAAAATGACATCCA < 41bp 1 0.114805341732163 1 0.0904227197170258 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP11B ENSG00000058063 UTR3 Human protein_coding chr3:182637823 chr3:182637840 . . 0 38 hm5C_associated_SNPs_4631 0 0 1 0 0 Endoplasmic reticulum 1 0.500231646375232 1 0.999536707249536 hm5C_site_7628 DeepMRMD:1;iRNA_m5C:0.999536707249536 7629 chr3 182637840 182637840 1 + C T rs16833596 182637830 + 182637810 182637850 41 CTTATAAAACGTGCATATAACAAAATGACACCCAGTAGGCC CTTATAAAACGTGCATATAACAAAATGACATCCAGTAGGCC < 41bp 1 0.653969070115444 1 0.364926218986511 experiment 0.692061859769113 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP11B ENSG00000058063 UTR3 Human protein_coding chr3:182637830 chr3:182637840 . . 0 31 hm5C_associated_SNPs_4632 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921256 1 0.999536712157488 hm5C_site_7629 DeepMRMD:1;iRNA_m5C:0.999536712157488 7630 chr3 182637840 182637840 1 + C T rs16833596 182637838 + 182637818 182637858 41 ACGTGCATATAACAAAATGACACCCAGTAGGCCTGCATTAC ACGTGCATATAACAAAATGACATCCAGTAGGCCTGCATTAC < 41bp 1 0.216718212543163 1 0.0123291611671448 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP11B ENSG00000058063 UTR3 Human protein_coding chr3:182637838 chr3:182637840 . . 0 23 hm5C_associated_SNPs_4633 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_7630 DeepMRMD:1;iRNA_m5C:0.999536712157814 7631 chr3 182637840 182637840 1 + C T rs16833596 182637841 + 182637821 182637861 41 TGCATATAACAAAATGACACCCAGTAGGCCTGCATTACATT TGCATATAACAAAATGACATCCAGTAGGCCTGCATTACATT < 41bp 1 0.182042600683672 1 0.132571876049042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP11B ENSG00000058063 UTR3 Human protein_coding chr3:182637841 chr3:182637840 . . 0 20 hm5C_associated_SNPs_4634 0 0 1 0 0 Endoplasmic reticulum 1 0.500231833150954 1 0.999536333698092 hm5C_site_7631 DeepMRMD:1;iRNA_m5C:0.999536333698092 7632 chr3 183165451 183165451 1 + G T rs545887248 183165458 + 183165438 183165478 41 CACTTCACCAAGCGGCCGGTCCGAGGGGACATGGCGGCAAC CACTTCACCAAGCTGCCGGTCCGAGGGGACATGGCGGCAAC < 41bp 1 0.577753785446133 1 0.839850723743439 experiment 0.844492429107733 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LINC00888 ENSG00000240024 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:183165458 chr3:183165451 . . 0 14 hm5C_associated_SNPs_4635 0 0 0 0 0 unknown 1 0.500231665201948 0.320298552513122 0.999536669596103 hm5C_site_7632 DeepMRMD:0.320298552513122;iRNA_m5C:0.999536669596103 7633 chr3 183169943 183169943 1 + G A rs10937131 183169956 + 183169936 183169976 41 TTCAAGCGATTCTCGTGCCTCAGCCTCCCGAGTAGTAGCTG TTCAAGCAATTCTCGTGCCTCAGCCTCCCGAGTAGTAGCTG < 41bp 1 0.555060519660377 1 0.438773810863495 experiment 0.889878960679245 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LINC00888 ENSG00000240024 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:183169956 chr3:183169943 . . 0 8 hm5C_associated_SNPs_4636 0 0 1 0 0 unknown 1 0.500231643935563 1 0.999536712128875 hm5C_site_7633 DeepMRMD:1;iRNA_m5C:0.999536712128875 7634 chr3 183169944 183169944 1 + A G rs10937132 183169956 + 183169936 183169976 41 TTCAAGCGATTCTCGTGCCTCAGCCTCCCGAGTAGTAGCTG TTCAAGCGGTTCTCGTGCCTCAGCCTCCCGAGTAGTAGCTG < 41bp 1 0.643476001260277 1 0.681616902351379 experiment 0.713047997479446 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LINC00888 ENSG00000240024 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:183169956 chr3:183169944 . . 0 9 hm5C_associated_SNPs_4637 0 0 1 0 0 unknown 1 0.500231643922706 0.636766195297242 0.999536712154589 hm5C_site_7634 DeepMRMD:0.636766195297242;iRNA_m5C:0.999536712154589 7635 chr3 183860633 183860633 1 + C T rs148734067 183860652 + 183860632 183860672 41 CCGGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA CTGGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA < 41bp 1 0.118405818070432 1 0.0812154114246368 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860652 chr3:183860633 nonsynonymous SNV 0.996 1 2 hm5C_associated_SNPs_4640 0 0 1 0 2 Ribosome 1 0.500231643921142 1 0.999536712157716 hm5C_site_7635 DeepMRMD:1;iRNA_m5C:0.999536712157716 7636 chr3 183860634 183860634 1 + G A rs142361539 183860652 + 183860632 183860672 41 CCGGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA CCAGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA < 41bp 1 0.120570691136638 1 0.104456424713135 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860652 chr3:183860634 synonymous SNV . 0 3 hm5C_associated_SNPs_4641 1 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7636 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 7637 chr3 183873345 183873345 1 + C G rs540238355 183873349 + 183873329 183873369 41 CCGCTGGGCCGCGCCGCGCGCCGCCGCCGTCTGGGAGGCTC CCGCTGGGCCGCGCCGGGCGCCGCCGCCGTCTGGGAGGCTC < 41bp 1 0.584660753459775 1 0.155757248401642 experiment 0.83067849308045 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DVL3 ENSG00000161202 UTR5 Human protein_coding chr3:183873349 chr3:183873345 . . 0 17 hm5C_associated_SNPs_4642 0 0 1 0 0 Cytosol 1 0.500231620844671 1 0.999536758310658 hm5C_site_7637 DeepMRMD:1;iRNA_m5C:0.999536758310658 7638 chr3 183873345 183873345 1 + C G rs540238355 183873350 + 183873330 183873370 41 CGCTGGGCCGCGCCGCGCGCCGCCGCCGTCTGGGAGGCTCG CGCTGGGCCGCGCCGGGCGCCGCCGCCGTCTGGGAGGCTCG < 41bp 1 0.68493880807903 1 0.539180874824524 experiment 0.630122383841941 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DVL3 ENSG00000161202 UTR5 Human protein_coding chr3:183873350 chr3:183873345 . . 0 16 hm5C_associated_SNPs_4643 0 0 1 0 0 Cytosol 1 0.500231643921089 0.921638250350952 0.999536712157822 hm5C_site_7638 DeepMRMD:0.921638250350952;iRNA_m5C:0.999536712157822 7639 chr3 183873345 183873345 1 + C G rs540238355 183873352 + 183873332 183873372 41 CTGGGCCGCGCCGCGCGCCGCCGCCGTCTGGGAGGCTCGGC CTGGGCCGCGCCGGGCGCCGCCGCCGTCTGGGAGGCTCGGC < 41bp 1 0.576523967452739 1 0.636173963546753 experiment 0.846952065094523 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DVL3 ENSG00000161202 UTR5 Human protein_coding chr3:183873352 chr3:183873345 . . 0 14 hm5C_associated_SNPs_4644 0 0 1 0 0 Cytosol 1 0.500231643594881 0.727652072906494 0.999536712810239 hm5C_site_7639 DeepMRMD:0.727652072906494;iRNA_m5C:0.999536712810239 7640 chr3 183976298 183976298 1 + C T rs374704230 183976295 + 183976275 183976315 41 AAATCCTCTCACCCCCCAGACCTCCCACCTCACCTTGCTTC AAATCCTCTCACCCCCCAGACCTTCCACCTCACCTTGCTTC < 41bp 1 0.00690501015321895 1 0.30447381734848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ECE2 ENSG00000145194 CDS Human protein_coding chr3:183976295 chr3:183976298 nonsynonymous SNV 0.573 0 24 hm5C_associated_SNPs_4645 0 0 1 0 0 Ribosome 1 0.500231643397919 1 0.999536713204163 hm5C_site_7640 DeepMRMD:1;iRNA_m5C:0.999536713204163 7641 chr3 184021193 184021193 1 + T C rs146339706 184021213 + 184021193 184021233 41 TGGCCAAGACAAGCTGCTAACAGATGATGGCAACAAATGGC CGGCCAAGACAAGCTGCTAACAGATGATGGCAACAAATGGC < 41bp 1 0.446646244998647 1 0.692312598228455 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021213 chr3:184021193 synonymous SNV . 0 1 hm5C_associated_SNPs_4646 0 0 1 0 1 Ribosome 1 0.500231756287274 0.61537480354309 0.999536487425453 hm5C_site_7641 DeepMRMD:0.61537480354309;iRNA_m5C:0.999536487425453 7642 chr3 184032991 184032991 1 + C T rs139965816 184032981 + 184032961 184033001 41 TGAAACCGGCTCCTCGACGGCCGCCGCCCGCCTGGCCTTTT TGAAACCGGCTCCTCGACGGCCGCCGCCCGTCTGGCCTTTT < 41bp 1 0.104977908664194 1 0.25198495388031 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 UTR5 Human protein_coding chr3:184032981 chr3:184032991 . . 0 31 hm5C_associated_SNPs_4647 0 0 0 0 0 Nucleus 1 0.500231643921056 1 0.999536712157888 hm5C_site_7642 DeepMRMD:1;iRNA_m5C:0.999536712157888 7643 chr3 184032991 184032991 1 + C T rs139965816 184032982 + 184032962 184033002 41 GAAACCGGCTCCTCGACGGCCGCCGCCCGCCTGGCCTTTTA GAAACCGGCTCCTCGACGGCCGCCGCCCGTCTGGCCTTTTA < 41bp 1 0.338508296855235 1 0.482683479785919 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 UTR5 Human protein_coding chr3:184032982 chr3:184032991 . . 0 30 hm5C_associated_SNPs_4648 0 0 0 0 0 Nucleus 1 0.500231643921184 1 0.999536712157632 hm5C_site_7643 DeepMRMD:1;iRNA_m5C:0.999536712157632 7644 chr3 184032991 184032991 1 + C T rs139965816 184032984 + 184032964 184033004 41 AACCGGCTCCTCGACGGCCGCCGCCCGCCTGGCCTTTTAGG AACCGGCTCCTCGACGGCCGCCGCCCGTCTGGCCTTTTAGG < 41bp 1 0.0536630695518064 1 0.221190005540848 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 UTR5 Human protein_coding chr3:184032984 chr3:184032991 . . 0 28 hm5C_associated_SNPs_4649 0 0 0 0 0 Nucleus 1 0.500231654667229 1 0.999536690665542 hm5C_site_7644 DeepMRMD:1;iRNA_m5C:0.999536690665542 7645 chr3 184032991 184032991 1 + C T rs139965816 184032985 + 184032965 184033005 41 ACCGGCTCCTCGACGGCCGCCGCCCGCCTGGCCTTTTAGGG ACCGGCTCCTCGACGGCCGCCGCCCGTCTGGCCTTTTAGGG < 41bp 1 0.15148487962089 1 0.276833444833755 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 UTR5 Human protein_coding chr3:184032985 chr3:184032991 . . 0 27 hm5C_associated_SNPs_4650 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7645 DeepMRMD:1;iRNA_m5C:0.999536712157815 7646 chr3 184032991 184032991 1 + C T rs139965816 184032987 + 184032967 184033007 41 CGGCTCCTCGACGGCCGCCGCCCGCCTGGCCTTTTAGGGCC CGGCTCCTCGACGGCCGCCGCCCGTCTGGCCTTTTAGGGCC < 41bp 1 0.216317712745247 1 0.154661625623703 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 UTR5 Human protein_coding chr3:184032987 chr3:184032991 . . 0 25 hm5C_associated_SNPs_4651 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7646 DeepMRMD:1;iRNA_m5C:0.999536712157815 7647 chr3 184032991 184032991 1 + C T rs139965816 184032988 + 184032968 184033008 41 GGCTCCTCGACGGCCGCCGCCCGCCTGGCCTTTTAGGGCCT GGCTCCTCGACGGCCGCCGCCCGTCTGGCCTTTTAGGGCCT < 41bp 1 0.0430980535085965 1 0.134730219841003 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 UTR5 Human protein_coding chr3:184032988 chr3:184032991 . . 0 24 hm5C_associated_SNPs_4652 0 0 0 0 0 Nucleus 1 0.500231644809383 1 0.999536710381233 hm5C_site_7647 DeepMRMD:1;iRNA_m5C:0.999536710381233 7648 chr3 184032991 184032991 1 + C T rs139965816 184032989 + 184032969 184033009 41 GCTCCTCGACGGCCGCCGCCCGCCTGGCCTTTTAGGGCCTG GCTCCTCGACGGCCGCCGCCCGTCTGGCCTTTTAGGGCCTG < 41bp 1 0.1631102000211 1 0.127326488494873 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 UTR5 Human protein_coding chr3:184032989 chr3:184032991 . . 0 23 hm5C_associated_SNPs_4653 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7648 DeepMRMD:1;iRNA_m5C:0.999536712157815 7649 chr3 184037533 184037533 1 + A G rs13319149 184037529 + 184037509 184037549 41 CAGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAA CAGTTTCCCACTGGCGTGGCCCCCGCCCCAGTTTTGATGAA < 41bp 1 0.263059123502588 1 0.158344894647598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037529 chr3:184037533 nonsynonymous SNV 0.953 0 25 hm5C_associated_SNPs_4654 0 0 1 0 2 Nucleus 1 0.500231643920946 1 0.999536712158108 hm5C_site_7649 DeepMRMD:1;iRNA_m5C:0.999536712158108 7650 chr3 184037533 184037533 1 + A G rs13319149 184037530 + 184037510 184037550 41 AGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAAC AGTTTCCCACTGGCGTGGCCCCCGCCCCAGTTTTGATGAAC < 41bp 1 0.203081807191821 1 0.0953438282012939 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037530 chr3:184037533 nonsynonymous SNV 0.953 0 24 hm5C_associated_SNPs_4655 0 0 1 0 2 Nucleus 1 0.500231644145522 1 0.999536711708956 hm5C_site_7650 DeepMRMD:1;iRNA_m5C:0.999536711708956 7651 chr3 184037533 184037533 1 + A G rs13319149 184037531 + 184037511 184037551 41 GTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACC GTTTCCCACTGGCGTGGCCCCCGCCCCAGTTTTGATGAACC < 41bp 1 0.148895017017421 1 0.204185217618942 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037531 chr3:184037533 nonsynonymous SNV 0.953 0 23 hm5C_associated_SNPs_4656 0 0 1 0 2 Nucleus 1 0.500231643921207 1 0.999536712157586 hm5C_site_7651 DeepMRMD:1;iRNA_m5C:0.999536712157586 7652 chr3 184037533 184037533 1 + A G rs13319149 184037534 + 184037514 184037554 41 TCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACCAGC TCCCACTGGCGTGGCCCCCGCCCCAGTTTTGATGAACCAGC < 41bp 1 0.587679684346808 1 0.319576680660248 experiment 0.824640631306385 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037534 chr3:184037533 nonsynonymous SNV 0.953 0 20 hm5C_associated_SNPs_4657 0 0 1 0 2 Nucleus 1 0.500231619763099 1 0.999536760473801 hm5C_site_7652 DeepMRMD:1;iRNA_m5C:0.999536760473801 7653 chr3 184648315 184648315 1 + G A rs74927619 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACAGTGCAGAGAAGAAGCAGTCTGTATGGCAGAAAGCA < 41bp 1 0.110878098228124 1 0.169488281011581 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648315 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_4658 0 0 1 0 2 chromatin 1 0.500230396687383 1 0.999539206625234 hm5C_site_7653 DeepMRMD:1;iRNA_m5C:0.999539206625234 7654 chr3 186505464 186505464 1 + G A rs141842051 186505449 + 186505429 186505469 41 GGTTTTTAAGTAACCTTTGCCAACTTGGGCTATTTGGAAGA GGTTTTTAAGTAACCTTTGCCAACTTGGGCTATTTAGAAGA < 41bp 1 0.327750795224401 1 0.711080968379974 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA4 ENSG00000263776 ncRNA_exonic Human snoRNA chr3:186505449 chr3:186505464 . . 0 36 hm5C_associated_SNPs_4659 0 0 1 0 0 unknown 1 0.500231643921092 0.577838063240052 0.999536712157815 hm5C_site_7654 DeepMRMD:0.577838063240052;iRNA_m5C:0.999536712157815 7655 chr3 186505464 186505464 1 + G A rs141842051 186505452 + 186505432 186505472 41 TTTTAAGTAACCTTTGCCAACTTGGGCTATTTGGAAGAGTA TTTTAAGTAACCTTTGCCAACTTGGGCTATTTAGAAGAGTA < 41bp 1 0.364535462381114 1 0.0780524611473083 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA4 ENSG00000263776 ncRNA_exonic Human snoRNA chr3:186505452 chr3:186505464 . . 0 33 hm5C_associated_SNPs_4660 0 0 1 0 0 unknown 1 0.500231643923624 1 0.999536712152753 hm5C_site_7655 DeepMRMD:1;iRNA_m5C:0.999536712152753 7656 chr3 186505464 186505464 1 + G A rs141842051 186505458 + 186505438 186505478 41 GTAACCTTTGCCAACTTGGGCTATTTGGAAGAGTAAAAGAC GTAACCTTTGCCAACTTGGGCTATTTAGAAGAGTAAAAGAC < 41bp 1 0.111921719689616 1 0.151142746210098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA4 ENSG00000263776 ncRNA_exonic Human snoRNA chr3:186505458 chr3:186505464 . . 0 27 hm5C_associated_SNPs_4661 0 0 1 0 0 unknown 1 0.500231522617179 1 0.999536954765642 hm5C_site_7656 DeepMRMD:1;iRNA_m5C:0.999536954765642 7657 chr3 186795216 186795216 1 + A G rs9716 186795218 + 186795198 186795238 41 CCCCATGTGCTCAAGGGGATCTAATGTTTGGGCTCCAAACT CCCCATGTGCTCAAGGGGGTCTAATGTTTGGGCTCCAAACT < 41bp 1 0.409915968754686 1 0.192925870418549 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ST6GAL1 ENSG00000073849 UTR3 Human protein_coding chr3:186795218 chr3:186795216 . . 0 19 hm5C_associated_SNPs_4662 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7657 DeepMRMD:1;iRNA_m5C:0.999536712157815 7658 chr3 186795228 186795228 1 + G A rs149008503 186795218 + 186795198 186795238 41 CCCCATGTGCTCAAGGGGATCTAATGTTTGGGCTCCAAACT CCCCATGTGCTCAAGGGGATCTAATGTTTGAGCTCCAAACT < 41bp 1 0.521236412887457 1 0.212711930274963 experiment 0.957527174225085 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ST6GAL1 ENSG00000073849 UTR3 Human protein_coding chr3:186795218 chr3:186795228 . . 0 31 hm5C_associated_SNPs_4663 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_7658 DeepMRMD:1;iRNA_m5C:0.999536712157815 7659 chr3 188597945 188597945 1 + A T rs78329585 188597941 + 188597921 188597961 41 CCATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGGACTACAG CCATTCTCCTGTCTCAGCCTCCCGTGTAGCTGGGACTACAG < 41bp 1 0.213836604828724 1 0.146410703659058 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188597941 chr3:188597945 . . 0 25 hm5C_associated_SNPs_4664 0 0 0 0 0 Cytosol 1 0.500231643921085 1 0.99953671215783 hm5C_site_7659 DeepMRMD:1;iRNA_m5C:0.99953671215783 7660 chr3 188597945 188597945 1 + A T rs78329585 188597942 + 188597922 188597962 41 CATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGGACTACAGG CATTCTCCTGTCTCAGCCTCCCGTGTAGCTGGGACTACAGG < 41bp 1 0.124087858391696 1 0.529897928237915 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188597942 chr3:188597945 . . 0 24 hm5C_associated_SNPs_4665 0 0 0 0 0 Cytosol 1 0.500231643921094 0.94020414352417 0.999536712157812 hm5C_site_7660 DeepMRMD:0.94020414352417;iRNA_m5C:0.999536712157812 7661 chr3 188597945 188597945 1 + A T rs78329585 188597950 + 188597930 188597970 41 TGTCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGCC TGTCTCAGCCTCCCGTGTAGCTGGGACTACAGGCGCCTGCC < 41bp 1 0.657873609365457 1 0.658069610595703 experiment 0.684252781269087 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188597950 chr3:188597945 . . 0 16 hm5C_associated_SNPs_4666 0 0 0 0 0 Cytosol 1 0.50023142961134 0.683860778808594 0.99953714077732 hm5C_site_7661 DeepMRMD:0.683860778808594;iRNA_m5C:0.99953714077732 7662 chr3 188598867 188598867 1 + T G rs561118773 188598850 + 188598830 188598870 41 AGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTTCAG AGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAG < 41bp 1 0.612941309693419 1 0.475240617990494 experiment 0.774117380613161 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188598850 chr3:188598867 . . 0 38 hm5C_associated_SNPs_4667 0 0 0 0 0 Cytosol 1 0.50023163857676 1 0.999536722846481 hm5C_site_7662 DeepMRMD:1;iRNA_m5C:0.999536722846481 7663 chr3 188598867 188598867 1 + T G rs561118773 188598851 + 188598831 188598871 41 GGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTTCAGT GGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGT < 41bp 1 0.61186397302551 1 0.752473831176758 experiment 0.776272053948981 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188598851 chr3:188598867 . . 0 37 hm5C_associated_SNPs_4668 0 0 0 0 0 Cytosol 1 0.500231623534718 0.495052337646484 0.999536752930563 hm5C_site_7663 DeepMRMD:0.495052337646484;iRNA_m5C:0.999536752930563 7664 chr3 188600719 188600719 1 + G A rs113758451 188600735 + 188600715 188600755 41 AGACGGGGTTTCACCGTGGTCTCGATCTCCTGACCTCGTGA AGACAGGGTTTCACCGTGGTCTCGATCTCCTGACCTCGTGA < 41bp 1 0.648072164687828 1 0.696426689624786 experiment 0.703855670624344 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600735 chr3:188600719 . . 0 5 hm5C_associated_SNPs_4669 0 0 0 0 0 Cytosol 1 0.500231643912761 0.607146620750428 0.999536712174479 hm5C_site_7664 DeepMRMD:0.607146620750428;iRNA_m5C:0.999536712174479 7665 chr3 188600719 188600719 1 + G A rs113758451 188600737 + 188600717 188600757 41 ACGGGGTTTCACCGTGGTCTCGATCTCCTGACCTCGTGATC ACAGGGTTTCACCGTGGTCTCGATCTCCTGACCTCGTGATC < 41bp 1 0.19495044090891 1 0.270060449838638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600737 chr3:188600719 . . 0 3 hm5C_associated_SNPs_4670 0 0 0 0 0 Cytosol 1 0.50023164392175 1 0.9995367121565 hm5C_site_7665 DeepMRMD:1;iRNA_m5C:0.9995367121565 7666 chr3 188600745 188600745 1 + T C rs139006345 188600735 + 188600715 188600755 41 AGACGGGGTTTCACCGTGGTCTCGATCTCCTGACCTCGTGA AGACGGGGTTTCACCGTGGTCTCGATCTCCCGACCTCGTGA < 41bp 1 0.690892369560187 1 0.440978318452835 experiment 0.618215260879625 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600735 chr3:188600745 . . 0 31 hm5C_associated_SNPs_4671 0 0 0 0 0 Cytosol 1 0.500231559620087 1 0.999536880759825 hm5C_site_7666 DeepMRMD:1;iRNA_m5C:0.999536880759825 7667 chr3 188600745 188600745 1 + T C rs139006345 188600737 + 188600717 188600757 41 ACGGGGTTTCACCGTGGTCTCGATCTCCTGACCTCGTGATC ACGGGGTTTCACCGTGGTCTCGATCTCCCGACCTCGTGATC < 41bp 1 0.209316039386508 1 0.213876903057098 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600737 chr3:188600745 . . 0 29 hm5C_associated_SNPs_4672 0 0 0 0 0 Cytosol 1 0.500231735227555 1 0.999536529544891 hm5C_site_7667 DeepMRMD:1;iRNA_m5C:0.999536529544891 7668 chr3 188600745 188600745 1 + T C rs139006345 188600741 + 188600721 188600761 41 GGTTTCACCGTGGTCTCGATCTCCTGACCTCGTGATCCGCC GGTTTCACCGTGGTCTCGATCTCCCGACCTCGTGATCCGCC < 41bp 1 0.321305905566554 1 0.209820538759232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600741 chr3:188600745 . . 0 25 hm5C_associated_SNPs_4673 0 0 0 0 0 Cytosol 1 0.500357534445439 1 0.999284931109122 hm5C_site_7668 DeepMRMD:1;iRNA_m5C:0.999284931109122 7669 chr3 188600745 188600745 1 + T C rs139006345 188600743 + 188600723 188600763 41 TTTCACCGTGGTCTCGATCTCCTGACCTCGTGATCCGCCCG TTTCACCGTGGTCTCGATCTCCCGACCTCGTGATCCGCCCG < 41bp 1 0.597657916407001 1 0.891047060489655 experiment 0.804684167185997 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600743 chr3:188600745 . . 0 23 hm5C_associated_SNPs_4674 0 0 0 0 0 Cytosol 1 0.500579849071238 0.21790587902069 0.998840301857525 hm5C_site_7669 DeepMRMD:0.21790587902069;iRNA_m5C:0.998840301857525 7670 chr3 188600745 188600745 1 + T C rs139006345 188600744 + 188600724 188600764 41 TTCACCGTGGTCTCGATCTCCTGACCTCGTGATCCGCCCGC TTCACCGTGGTCTCGATCTCCCGACCTCGTGATCCGCCCGC < 41bp 1 0.158444727324998 1 0.563807249069214 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600744 chr3:188600745 . . 0 22 hm5C_associated_SNPs_4675 0 0 0 0 0 Cytosol 1 0.500231646077182 0.872385501861572 0.999536707845636 hm5C_site_7670 DeepMRMD:0.872385501861572;iRNA_m5C:0.999536707845636 7671 chr3 188600745 188600745 1 + T C rs139006345 188600748 + 188600728 188600768 41 CCGTGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCG CCGTGGTCTCGATCTCCCGACCTCGTGATCCGCCCGCCTCG < 41bp 1 0.112946969964724 1 0.0708465874195099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600748 chr3:188600745 . . 0 18 hm5C_associated_SNPs_4676 0 0 0 0 0 Cytosol 1 0.500232073934711 1 0.999535852130578 hm5C_site_7671 DeepMRMD:1;iRNA_m5C:0.999535852130578 7672 chr3 188600745 188600745 1 + T C rs139006345 188600749 + 188600729 188600769 41 CGTGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGG CGTGGTCTCGATCTCCCGACCTCGTGATCCGCCCGCCTCGG < 41bp 1 0.414515235534682 1 0.384841680526733 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600749 chr3:188600745 . . 0 17 hm5C_associated_SNPs_4677 0 0 0 0 0 Cytosol 1 0.500231647490451 1 0.999536705019098 hm5C_site_7672 DeepMRMD:1;iRNA_m5C:0.999536705019098 7673 chr3 188600745 188600745 1 + T C rs139006345 188600751 + 188600731 188600771 41 TGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCC TGGTCTCGATCTCCCGACCTCGTGATCCGCCCGCCTCGGCC < 41bp 1 0.552482162625205 1 0.673098206520081 experiment 0.895035674749591 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600751 chr3:188600745 . . 0 15 hm5C_associated_SNPs_4678 0 0 0 0 0 Cytosol 1 0.500231649647802 0.653803586959838 0.999536700704395 hm5C_site_7673 DeepMRMD:0.653803586959838;iRNA_m5C:0.999536700704395 7674 chr3 188600745 188600745 1 + T C rs139006345 188600757 + 188600737 188600777 41 CGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAA CGATCTCCCGACCTCGTGATCCGCCCGCCTCGGCCTCCCAA < 41bp 1 0.188039383454061 1 0.129204034805298 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600757 chr3:188600745 . . 0 9 hm5C_associated_SNPs_4679 0 0 0 0 0 Cytosol 1 0.50023165555422 1 0.99953668889156 hm5C_site_7674 DeepMRMD:1;iRNA_m5C:0.99953668889156 7675 chr3 188600745 188600745 1 + T C rs139006345 188600758 + 188600738 188600778 41 GATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAA GATCTCCCGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAA < 41bp 1 0.431911203867793 1 0.10431644320488 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600758 chr3:188600745 . . 0 8 hm5C_associated_SNPs_4680 0 0 0 0 0 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_7675 DeepMRMD:1;iRNA_m5C:0.999536712157818 7676 chr3 188600745 188600745 1 + T C rs139006345 188600760 + 188600740 188600780 41 TCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGT TCTCCCGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGT < 41bp 1 0.222357678345618 1 0.152293622493744 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600760 chr3:188600745 . . 0 6 hm5C_associated_SNPs_4681 0 0 0 0 0 Cytosol 1 0.500231641379804 1 0.999536717240393 hm5C_site_7676 DeepMRMD:1;iRNA_m5C:0.999536717240393 7677 chr3 188600745 188600745 1 + T C rs139006345 188600761 + 188600741 188600781 41 CTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTG CTCCCGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTG < 41bp 1 0.175206254090027 1 0.179257094860077 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600761 chr3:188600745 . . 0 5 hm5C_associated_SNPs_4682 0 0 0 0 0 Cytosol 1 0.500231643922651 1 0.999536712154699 hm5C_site_7677 DeepMRMD:1;iRNA_m5C:0.999536712154699 7678 chr3 188600745 188600745 1 + T C rs139006345 188600762 + 188600742 188600782 41 TCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGC TCCCGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGC < 41bp 1 0.167558410342117 1 0.31230217218399 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600762 chr3:188600745 . . 0 4 hm5C_associated_SNPs_4683 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_7678 DeepMRMD:1;iRNA_m5C:0.999536712157817 7679 chr3 188600745 188600745 1 + T C rs139006345 188600764 + 188600744 188600784 41 CTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCCA CCGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCCA < 41bp 1 0.110412969218974 1 0.156322926282883 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600764 chr3:188600745 . . 0 2 hm5C_associated_SNPs_4684 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7679 DeepMRMD:1;iRNA_m5C:0.999536712157815 7680 chr3 188600745 188600745 1 + T C rs139006345 188600765 + 188600745 188600785 41 TGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCCAA CGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCCAA < 41bp 1 0.33973741045791 1 0.282013744115829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188600765 chr3:188600745 . . 0 1 hm5C_associated_SNPs_4685 0 0 0 0 0 Cytosol 1 0.500231643921121 1 0.999536712157758 hm5C_site_7680 DeepMRMD:1;iRNA_m5C:0.999536712157758 7681 chr3 188601247 188601247 1 + G A rs553027073 188601261 + 188601241 188601281 41 CCGGGCGCGGTGGCTCGTGCCTGTAATCCAGCACTTTGGGA CCGGGCACGGTGGCTCGTGCCTGTAATCCAGCACTTTGGGA < 41bp 1 0.396442502359567 1 0.152731597423553 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601261 chr3:188601247 . . 0 7 hm5C_associated_SNPs_4686 0 0 1 0 0 Cytosol 1 0.500231643919796 1 0.999536712160409 hm5C_site_7681 DeepMRMD:1;iRNA_m5C:0.999536712160409 7682 chr3 188601290 188601290 1 + C A rs113366269 188601272 + 188601252 188601292 41 GGCTCGTGCCTGTAATCCAGCACTTTGGGAGGCCGAGGCGA GGCTCGTGCCTGTAATCCAGCACTTTGGGAGGCCGAGGAGA < 41bp 1 0.203639589892212 1 0.0321479141712189 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601272 chr3:188601290 . . 0 39 hm5C_associated_SNPs_4687 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_7682 DeepMRMD:1;iRNA_m5C:0.999536712157815 7683 chr3 188601290 188601290 1 + C A rs113366269 188601274 + 188601254 188601294 41 CTCGTGCCTGTAATCCAGCACTTTGGGAGGCCGAGGCGAGC CTCGTGCCTGTAATCCAGCACTTTGGGAGGCCGAGGAGAGC < 41bp 1 0.124247399010916 1 0.0722340941429138 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601274 chr3:188601290 . . 0 37 hm5C_associated_SNPs_4688 0 0 0 0 0 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_7683 DeepMRMD:1;iRNA_m5C:0.999536712157812 7684 chr3 188601290 188601290 1 + C A rs113366269 188601284 + 188601264 188601304 41 TAATCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCATGAG TAATCCAGCACTTTGGGAGGCCGAGGAGAGCGGATCATGAG < 41bp 1 0.426123557637417 1 0.551311373710632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601284 chr3:188601290 . . 0 27 hm5C_associated_SNPs_4689 0 0 0 0 0 Cytosol 1 0.500231643921092 0.897377252578736 0.999536712157815 hm5C_site_7684 DeepMRMD:0.897377252578736;iRNA_m5C:0.999536712157815 7685 chr3 188601290 188601290 1 + C A rs113366269 188601285 + 188601265 188601305 41 AATCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCATGAGG AATCCAGCACTTTGGGAGGCCGAGGAGAGCGGATCATGAGG < 41bp 1 0.522646697407228 1 0.817014932632446 experiment 0.954706605185544 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601285 chr3:188601290 . . 0 26 hm5C_associated_SNPs_4690 0 0 0 0 0 Cytosol 1 0.500231643932486 0.365970134735108 0.999536712135028 hm5C_site_7685 DeepMRMD:0.365970134735108;iRNA_m5C:0.999536712135028 7686 chr3 188601290 188601290 1 + C A rs113366269 188601294 + 188601274 188601314 41 CTTTGGGAGGCCGAGGCGAGCGGATCATGAGGTCAAGAGAT CTTTGGGAGGCCGAGGAGAGCGGATCATGAGGTCAAGAGAT < 41bp 1 0.454539994149985 1 0.716273128986359 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601294 chr3:188601290 . . 0 17 hm5C_associated_SNPs_4691 0 0 0 0 0 Cytosol 1 0.500231643921092 0.567453742027282 0.999536712157816 hm5C_site_7686 DeepMRMD:0.567453742027282;iRNA_m5C:0.999536712157816 7687 chr3 188601290 188601290 1 + C A rs113366269 188601299 + 188601279 188601319 41 GGAGGCCGAGGCGAGCGGATCATGAGGTCAAGAGATCGAGA GGAGGCCGAGGAGAGCGGATCATGAGGTCAAGAGATCGAGA < 41bp 1 0.482318284929128 1 0.237866103649139 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601299 chr3:188601290 . . 0 12 hm5C_associated_SNPs_4692 0 0 0 0 0 Cytosol 1 0.500234362712856 1 0.999531274574287 hm5C_site_7687 DeepMRMD:1;iRNA_m5C:0.999531274574287 7688 chr3 188601290 188601290 1 + C A rs113366269 188601307 + 188601287 188601327 41 AGGCGAGCGGATCATGAGGTCAAGAGATCGAGACCATCCTG AGGAGAGCGGATCATGAGGTCAAGAGATCGAGACCATCCTG < 41bp 1 0.675470025937822 1 0.514404118061066 experiment 0.649059948124357 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601307 chr3:188601290 . . 0 4 hm5C_associated_SNPs_4693 0 0 0 0 0 Cytosol 1 0.500231645028959 0.971191763877868 0.999536709942082 hm5C_site_7688 DeepMRMD:0.971191763877868;iRNA_m5C:0.999536709942082 7689 chr3 188601294 188601294 1 + C T rs146135050 188601274 + 188601254 188601294 41 CTCGTGCCTGTAATCCAGCACTTTGGGAGGCCGAGGCGAGC CTCGTGCCTGTAATCCAGCACTTTGGGAGGCCGAGGCGAGT < 41bp 1 0.132083499512491 1 0.0588945150375366 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601274 chr3:188601294 . . 0 41 hm5C_associated_SNPs_4694 0 0 0 0 0 Cytosol 1 0.500231643886027 1 0.999536712227946 hm5C_site_7689 DeepMRMD:1;iRNA_m5C:0.999536712227946 7690 chr3 188601294 188601294 1 + C T rs146135050 188601284 + 188601264 188601304 41 TAATCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCATGAG TAATCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAG < 41bp 1 0.375114751094665 1 0.638026475906372 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601284 chr3:188601294 . . 0 31 hm5C_associated_SNPs_4695 0 0 0 0 0 Cytosol 1 0.500231643921092 0.723947048187256 0.999536712157815 hm5C_site_7690 DeepMRMD:0.723947048187256;iRNA_m5C:0.999536712157815 7691 chr3 188601294 188601294 1 + C T rs146135050 188601285 + 188601265 188601305 41 AATCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCATGAGG AATCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGG < 41bp 1 0.453853069050022 1 0.838810205459595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601285 chr3:188601294 . . 0 30 hm5C_associated_SNPs_4696 0 0 0 0 0 Cytosol 1 0.500231715944888 0.32237958908081 0.999536568110224 hm5C_site_7691 DeepMRMD:0.32237958908081;iRNA_m5C:0.999536568110224 7692 chr3 188601294 188601294 1 + C T rs146135050 188601290 + 188601270 188601310 41 AGCACTTTGGGAGGCCGAGGCGAGCGGATCATGAGGTCAAG AGCACTTTGGGAGGCCGAGGCGAGTGGATCATGAGGTCAAG < 41bp 1 0.488566942150258 1 0.683699309825897 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601290 chr3:188601294 . . 0 25 hm5C_associated_SNPs_4697 0 0 0 0 0 Cytosol 1 0.500231643921092 0.632601380348206 0.999536712157815 hm5C_site_7692 DeepMRMD:0.632601380348206;iRNA_m5C:0.999536712157815 7693 chr3 188601294 188601294 1 + C T rs146135050 188601299 + 188601279 188601319 41 GGAGGCCGAGGCGAGCGGATCATGAGGTCAAGAGATCGAGA GGAGGCCGAGGCGAGTGGATCATGAGGTCAAGAGATCGAGA < 41bp 1 0.532877264455407 1 0.372095704078674 experiment 0.934245471089187 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601299 chr3:188601294 . . 0 16 hm5C_associated_SNPs_4698 0 0 0 0 0 Cytosol 1 0.500231895081811 1 0.999536209836379 hm5C_site_7693 DeepMRMD:1;iRNA_m5C:0.999536209836379 7694 chr3 188601295 188601295 1 + G A rs139180530 188601284 + 188601264 188601304 41 TAATCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCATGAG TAATCCAGCACTTTGGGAGGCCGAGGCGAGCAGATCATGAG < 41bp 1 0.400389105197152 1 0.724848926067352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601284 chr3:188601295 . . 0 32 hm5C_associated_SNPs_4700 0 0 0 0 0 Cytosol 1 0.500231648607548 0.550302147865296 0.999536702784905 hm5C_site_7694 DeepMRMD:0.550302147865296;iRNA_m5C:0.999536702784905 7695 chr3 188601295 188601295 1 + G A rs139180530 188601285 + 188601265 188601305 41 AATCCAGCACTTTGGGAGGCCGAGGCGAGCGGATCATGAGG AATCCAGCACTTTGGGAGGCCGAGGCGAGCAGATCATGAGG < 41bp 1 0.526623264906359 1 0.817858636379242 experiment 0.946753470187282 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601285 chr3:188601295 . . 0 31 hm5C_associated_SNPs_4701 0 0 0 0 0 Cytosol 1 0.500231716483226 0.364282727241516 0.999536567033547 hm5C_site_7695 DeepMRMD:0.364282727241516;iRNA_m5C:0.999536567033547 7696 chr3 188601295 188601295 1 + G A rs139180530 188601290 + 188601270 188601310 41 AGCACTTTGGGAGGCCGAGGCGAGCGGATCATGAGGTCAAG AGCACTTTGGGAGGCCGAGGCGAGCAGATCATGAGGTCAAG < 41bp 1 0.388604299012953 1 0.790385127067566 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601290 chr3:188601295 . . 0 26 hm5C_associated_SNPs_4702 0 0 0 0 0 Cytosol 1 0.500231643921093 0.419229745864868 0.999536712157815 hm5C_site_7696 DeepMRMD:0.419229745864868;iRNA_m5C:0.999536712157815 7697 chr3 188601295 188601295 1 + G A rs139180530 188601294 + 188601274 188601314 41 CTTTGGGAGGCCGAGGCGAGCGGATCATGAGGTCAAGAGAT CTTTGGGAGGCCGAGGCGAGCAGATCATGAGGTCAAGAGAT < 41bp 1 0.403241276072331 1 0.702834486961365 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601294 chr3:188601295 . . 0 22 hm5C_associated_SNPs_4703 0 0 0 0 0 Cytosol 1 0.500231643921092 0.59433102607727 0.999536712157815 hm5C_site_7697 DeepMRMD:0.59433102607727;iRNA_m5C:0.999536712157815 7698 chr3 188601295 188601295 1 + G A rs139180530 188601299 + 188601279 188601319 41 GGAGGCCGAGGCGAGCGGATCATGAGGTCAAGAGATCGAGA GGAGGCCGAGGCGAGCAGATCATGAGGTCAAGAGATCGAGA < 41bp 1 0.544362815064665 1 0.20142662525177 experiment 0.911274369870671 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601299 chr3:188601295 . . 0 17 hm5C_associated_SNPs_4704 0 0 0 0 0 Cytosol 1 0.500231623169398 1 0.999536753661204 hm5C_site_7698 DeepMRMD:1;iRNA_m5C:0.999536753661204 7699 chr3 188601295 188601295 1 + G A rs139180530 188601307 + 188601287 188601327 41 AGGCGAGCGGATCATGAGGTCAAGAGATCGAGACCATCCTG AGGCGAGCAGATCATGAGGTCAAGAGATCGAGACCATCCTG < 41bp 1 0.667041597652772 1 0.469369381666183 experiment 0.665916804694456 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601307 chr3:188601295 . . 0 9 hm5C_associated_SNPs_4705 0 0 0 0 0 Cytosol 1 0.500231646872456 1 0.999536706255089 hm5C_site_7699 DeepMRMD:1;iRNA_m5C:0.999536706255089 7700 chr3 188601311 188601311 1 + A G rs142483731 188601294 + 188601274 188601314 41 CTTTGGGAGGCCGAGGCGAGCGGATCATGAGGTCAAGAGAT CTTTGGGAGGCCGAGGCGAGCGGATCATGAGGTCAAGGGAT < 41bp 1 0.429267572290363 1 0.716517269611359 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601294 chr3:188601311 . . 0 38 hm5C_associated_SNPs_4706 0 0 0 0 0 Cytosol 1 0.500231643921092 0.566965460777282 0.999536712157815 hm5C_site_7700 DeepMRMD:0.566965460777282;iRNA_m5C:0.999536712157815 7701 chr3 188601311 188601311 1 + A G rs142483731 188601299 + 188601279 188601319 41 GGAGGCCGAGGCGAGCGGATCATGAGGTCAAGAGATCGAGA GGAGGCCGAGGCGAGCGGATCATGAGGTCAAGGGATCGAGA < 41bp 1 0.514084729441631 1 0.313471764326096 experiment 0.971830541116738 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601299 chr3:188601311 . . 0 33 hm5C_associated_SNPs_4707 0 0 0 0 0 Cytosol 1 0.500231696324954 1 0.999536607350092 hm5C_site_7701 DeepMRMD:1;iRNA_m5C:0.999536607350092 7702 chr3 188601311 188601311 1 + A G rs142483731 188601307 + 188601287 188601327 41 AGGCGAGCGGATCATGAGGTCAAGAGATCGAGACCATCCTG AGGCGAGCGGATCATGAGGTCAAGGGATCGAGACCATCCTG < 41bp 1 0.664362052599885 1 0.729273319244385 experiment 0.67127589480023 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601307 chr3:188601311 . . 0 25 hm5C_associated_SNPs_4708 0 0 0 0 0 Cytosol 1 0.500231643920503 0.54145336151123 0.999536712158993 hm5C_site_7702 DeepMRMD:0.54145336151123;iRNA_m5C:0.999536712158993 7703 chr3 188601393 188601393 1 + C T rs553025745 188601389 + 188601369 188601409 41 AAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAACT AAATTAGCCGGGCGTGTTGGCGGGTGCCTGTAGTCCCAACT < 41bp 1 0.530808878744276 1 0.981905341148376 experiment 0.938382242511449 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601389 chr3:188601393 . . 0 25 hm5C_associated_SNPs_4709 0 0 0 0 0 Cytosol 1 0.500231643921092 0.036189317703248 0.999536712157815 hm5C_site_7703 DeepMRMD:0.036189317703248;iRNA_m5C:0.999536712157815 7704 chr3 188601393 188601393 1 + C T rs553025745 188601395 + 188601375 188601415 41 GCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAACTACTTGG GCCGGGCGTGTTGGCGGGTGCCTGTAGTCCCAACTACTTGG < 41bp 1 0.169095988849741 1 0.0437798500061035 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601395 chr3:188601393 . . 0 19 hm5C_associated_SNPs_4710 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7704 DeepMRMD:1;iRNA_m5C:0.999536712157815 7705 chr3 188601393 188601393 1 + C T rs553025745 188601396 + 188601376 188601416 41 CCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAACTACTTGGG CCGGGCGTGTTGGCGGGTGCCTGTAGTCCCAACTACTTGGG < 41bp 1 0.490020370138836 1 0.72739052772522 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601396 chr3:188601393 . . 0 18 hm5C_associated_SNPs_4711 0 0 0 0 0 Cytosol 1 0.500231643920471 0.54521894454956 0.999536712159058 hm5C_site_7705 DeepMRMD:0.54521894454956;iRNA_m5C:0.999536712159058 7706 chr3 188601393 188601393 1 + C T rs553025745 188601403 + 188601383 188601423 41 TGTTGGCGGGCGCCTGTAGTCCCAACTACTTGGGAGGCTGA TGTTGGCGGGTGCCTGTAGTCCCAACTACTTGGGAGGCTGA < 41bp 1 0.310717132096681 1 0.715970158576965 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601403 chr3:188601393 . . 0 11 hm5C_associated_SNPs_4712 0 0 0 0 0 Cytosol 1 0.500231643921092 0.56805968284607 0.999536712157815 hm5C_site_7706 DeepMRMD:0.56805968284607;iRNA_m5C:0.999536712157815 7707 chr3 188601393 188601393 1 + C T rs553025745 188601404 + 188601384 188601424 41 GTTGGCGGGCGCCTGTAGTCCCAACTACTTGGGAGGCTGAG GTTGGCGGGTGCCTGTAGTCCCAACTACTTGGGAGGCTGAG < 41bp 1 0.125710313476797 1 0.308448135852814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601404 chr3:188601393 . . 0 10 hm5C_associated_SNPs_4713 0 0 0 0 0 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_7707 DeepMRMD:1;iRNA_m5C:0.999536712157806 7708 chr3 188601393 188601393 1 + C T rs553025745 188601405 + 188601385 188601425 41 TTGGCGGGCGCCTGTAGTCCCAACTACTTGGGAGGCTGAGG TTGGCGGGTGCCTGTAGTCCCAACTACTTGGGAGGCTGAGG < 41bp 1 0.238345870985884 1 0.465377360582352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601405 chr3:188601393 . . 0 9 hm5C_associated_SNPs_4714 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7708 DeepMRMD:1;iRNA_m5C:0.999536712157815 7709 chr3 188601393 188601393 1 + C T rs553025745 188601411 + 188601391 188601431 41 GGCGCCTGTAGTCCCAACTACTTGGGAGGCTGAGGCAGGAG GGTGCCTGTAGTCCCAACTACTTGGGAGGCTGAGGCAGGAG < 41bp 1 0.363350942275291 1 0.438868463039398 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601411 chr3:188601393 . . 0 3 hm5C_associated_SNPs_4715 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7709 DeepMRMD:1;iRNA_m5C:0.999536712157815 7710 chr3 188601500 188601500 1 + G A rs182705031 188601480 + 188601460 188601500 41 GCAGTGAGCAGAGATTGCGCCACTGCACTCCAGCCTGGGCG GCAGTGAGCAGAGATTGCGCCACTGCACTCCAGCCTGGGCA < 41bp 1 0.236840455753566 1 0.365871578454971 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601480 chr3:188601500 . . 0 41 hm5C_associated_SNPs_4716 0 0 0 0 0 Cytosol 1 0.500231643910768 1 0.999536712178464 hm5C_site_7710 DeepMRMD:1;iRNA_m5C:0.999536712178464 7711 chr3 188601500 188601500 1 + G A rs182705031 188601482 + 188601462 188601502 41 AGTGAGCAGAGATTGCGCCACTGCACTCCAGCCTGGGCGAC AGTGAGCAGAGATTGCGCCACTGCACTCCAGCCTGGGCAAC < 41bp 1 0.398169380299422 1 0.234199345111847 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601482 chr3:188601500 . . 0 39 hm5C_associated_SNPs_4717 0 0 0 0 0 Cytosol 1 0.500231643921064 1 0.999536712157871 hm5C_site_7711 DeepMRMD:1;iRNA_m5C:0.999536712157871 7712 chr3 188601500 188601500 1 + G A rs182705031 188601485 + 188601465 188601505 41 GAGCAGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGA GAGCAGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGA < 41bp 1 0.126160776343221 1 0.0672775506973267 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601485 chr3:188601500 . . 0 36 hm5C_associated_SNPs_4718 0 0 0 0 0 Cytosol 1 0.50023164435929 1 0.99953671128142 hm5C_site_7712 DeepMRMD:1;iRNA_m5C:0.99953671128142 7713 chr3 188601500 188601500 1 + G A rs182705031 188601487 + 188601467 188601507 41 GCAGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAAC GCAGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAAC < 41bp 1 0.430492480410334 1 0.488932639360428 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601487 chr3:188601500 . . 0 34 hm5C_associated_SNPs_4719 0 0 0 0 0 Cytosol 1 0.500231644047603 1 0.999536711904794 hm5C_site_7713 DeepMRMD:1;iRNA_m5C:0.999536711904794 7714 chr3 188601500 188601500 1 + G A rs182705031 188601489 + 188601469 188601509 41 AGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAACGA AGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAACGA < 41bp 1 0.171520770961512 1 0.409423857927322 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601489 chr3:188601500 . . 0 32 hm5C_associated_SNPs_4720 0 0 0 0 0 Cytosol 1 0.500231644980465 1 0.99953671003907 hm5C_site_7714 DeepMRMD:1;iRNA_m5C:0.99953671003907 7715 chr3 188601500 188601500 1 + G A rs182705031 188601490 + 188601470 188601510 41 GAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAACGAG GAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAACGAG < 41bp 1 0.191591805182151 1 0.450055330991745 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601490 chr3:188601500 . . 0 31 hm5C_associated_SNPs_4721 0 0 0 0 0 Cytosol 1 0.50023164388644 1 0.999536712227121 hm5C_site_7715 DeepMRMD:1;iRNA_m5C:0.999536712227121 7716 chr3 188601500 188601500 1 + G A rs182705031 188601493 + 188601473 188601513 41 ATTGCGCCACTGCACTCCAGCCTGGGCGACAGAACGAGACT ATTGCGCCACTGCACTCCAGCCTGGGCAACAGAACGAGACT < 41bp 1 0.18730171196504 1 0.265203356742859 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601493 chr3:188601500 . . 0 28 hm5C_associated_SNPs_4722 0 0 0 0 0 Cytosol 1 0.500231541414154 1 0.999536917171692 hm5C_site_7716 DeepMRMD:1;iRNA_m5C:0.999536917171692 7717 chr3 188601500 188601500 1 + G A rs182705031 188601494 + 188601474 188601514 41 TTGCGCCACTGCACTCCAGCCTGGGCGACAGAACGAGACTC TTGCGCCACTGCACTCCAGCCTGGGCAACAGAACGAGACTC < 41bp 1 0.486456581345596 1 0.777448058128357 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601494 chr3:188601500 . . 0 27 hm5C_associated_SNPs_4723 0 0 0 0 0 Cytosol 1 0.500225646404308 0.445103883743286 0.999548707191384 hm5C_site_7717 DeepMRMD:0.445103883743286;iRNA_m5C:0.999548707191384 7718 chr3 188601938 188601938 1 + A G rs183679383 188601946 + 188601926 188601966 41 AGAAAATAGCGCAGGGAGGACAGTTATTAGTACCCCTATTC AGAAAATAGCGCGGGGAGGACAGTTATTAGTACCCCTATTC < 41bp 1 0.204918461786392 1 0.222410440444946 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LPP ENSG00000145012 UTR3 Human protein_coding chr3:188601946 chr3:188601938 . . 0 13 hm5C_associated_SNPs_4724 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7718 DeepMRMD:1;iRNA_m5C:0.999536712157815 7719 chr3 191047298 191047298 1 + G C rs530233231 191047282 + 191047262 191047302 41 CAGCTTGGTGCCTCGGGGACCGTCTCCCGCTGCTTTGGTCA CAGCTTGGTGCCTCGGGGACCGTCTCCCGCTGCTTTCGTCA < 41bp 1 0.432212140166398 1 0.0638598203659058 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC50 ENSG00000152492 UTR5 Human protein_coding chr3:191047282 chr3:191047298 . . 0 37 hm5C_associated_SNPs_4725 0 0 1 0 0 Ribosome 1 0.500231643921082 1 0.999536712157836 hm5C_site_7719 DeepMRMD:1;iRNA_m5C:0.999536712157836 7720 chr3 193336666 193336666 1 + G A rs569675223 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGAAAGAAACGGCGTTTAGAGCAACAGATCGTG < 41bp 1 0.0445000557694014 1 0.0466357469558716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336666 nonsynonymous SNV 0.948 0 11 hm5C_associated_SNPs_4726 1 0 1 0 2 Nucleus 1 0.500231643980079 1 0.999536712039842 hm5C_site_7720 DeepMRMD:1;iRNA_m5C:0.999536712039842 not specified not specified 7721 chr3 193413732 193413732 1 + A G rs1056366 193413715 + 193413695 193413735 41 GAGGATATGAAAAAATACTTCCGAAACCAGGAATTCAATGT GAGGATATGAAAAAATACTTCCGAAACCAGGAATTCAGTGT < 41bp 1 0.423971579727278 1 0.204909563064575 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OPA1 ENSG00000198836 UTR3 Human protein_coding chr3:193413715 chr3:193413732 . . 0 38 hm5C_associated_SNPs_4727 1 0 1 1 0 Nucleus 1 0.500231643926654 1 0.999536712146693 hm5C_site_7721 DeepMRMD:1;iRNA_m5C:0.999536712146693 Optic Atrophy, Dominant Optic Atrophy, Dominant 7722 chr3 194406981 194406981 1 + A G rs1773219 194406993 + 194406973 194407013 41 GGCTTTCCATCTCCAGCACCCCTCGGAGGTGGGGAGCACCG GGCTTTCCGTCTCCAGCACCCCTCGGAGGTGGGGAGCACCG < 41bp 1 0.260210197413505 1 0.100561171770096 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM43A ENSG00000185112 UTR5 Human protein_coding chr3:194406993 chr3:194406981 . . 0 9 hm5C_associated_SNPs_4728 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7722 DeepMRMD:1;iRNA_m5C:0.999536712157815 7723 chr3 194406997 194406997 1 + G A rs9877161 194406993 + 194406973 194407013 41 GGCTTTCCATCTCCAGCACCCCTCGGAGGTGGGGAGCACCG GGCTTTCCATCTCCAGCACCCCTCAGAGGTGGGGAGCACCG < 41bp 1 0.290644643335394 1 0.128769844770432 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM43A ENSG00000185112 UTR5 Human protein_coding chr3:194406993 chr3:194406997 . . 0 25 hm5C_associated_SNPs_4729 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7723 DeepMRMD:1;iRNA_m5C:0.999536712157815 7724 chr3 194407999 194407999 1 + G A rs143158704 194408016 + 194407996 194408036 41 GCGGCTGCCCAAGGTCTTCGCCTGGGTGTACCGGCACGAGC GCGACTGCCCAAGGTCTTCGCCTGGGTGTACCGGCACGAGC < 41bp 1 0.477797158438896 1 0.193897604942322 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM43A ENSG00000185112 CDS Human protein_coding chr3:194408016 chr3:194407999 synonymous SNV . 0 4 hm5C_associated_SNPs_4730 0 0 0 0 0 exosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_7724 DeepMRMD:1;iRNA_m5C:0.999536712157808 7725 chr3 194407999 194407999 1 + G A rs143158704 194408017 + 194407997 194408037 41 CGGCTGCCCAAGGTCTTCGCCTGGGTGTACCGGCACGAGCT CGACTGCCCAAGGTCTTCGCCTGGGTGTACCGGCACGAGCT < 41bp 1 0.695906668061801 1 0.805485606193542 experiment 0.608186663876398 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM43A ENSG00000185112 CDS Human protein_coding chr3:194408017 chr3:194407999 synonymous SNV . 0 3 hm5C_associated_SNPs_4731 0 0 0 0 0 exosome 1 0.500231643921149 0.389028787612916 0.999536712157703 hm5C_site_7725 DeepMRMD:0.389028787612916;iRNA_m5C:0.999536712157703 7726 chr3 195389591 195389591 1 + C A rs568347520 195389602 + 195389582 195389622 41 GGTCACACACTGTTGCAGCGCAGGTAAGAGAAAGGTGCCCC GGTCACACAATGTTGCAGCGCAGGTAAGAGAAAGGTGCCCC < 41bp 1 0.546257035371832 1 0.260939121246338 experiment 0.907485929256335 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195389602 chr3:195389591 . . 0 10 hm5C_associated_SNPs_4733 0 0 0 0 1 unknown 1 0.500231643921113 1 0.999536712157774 hm5C_site_7726 DeepMRMD:1;iRNA_m5C:0.999536712157774 7727 chr3 195398079 195398079 1 + A T rs545546213 195398099 + 195398079 195398119 41 AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG TAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG < 41bp 1 0.15117604352358 1 0.0292039811611176 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195398099 chr3:195398079 . . 0 1 hm5C_associated_SNPs_4734 0 0 0 0 2 unknown 1 0.50023157712613 1 0.999536845747741 hm5C_site_7727 DeepMRMD:1;iRNA_m5C:0.999536845747741 7728 chr3 195398106 195398106 1 + C T rs564303698 195398099 + 195398079 195398119 41 AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG AAGGTTTATGGAGCGATACGCCCCCATTGCGAAGGACCTGG < 41bp 1 0.144955537545939 1 0.0399689674377441 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195398099 chr3:195398106 . . 0 28 hm5C_associated_SNPs_4735 0 0 0 0 1 unknown 1 0.500231643798689 1 0.999536712402621 hm5C_site_7728 DeepMRMD:1;iRNA_m5C:0.999536712402621 7729 chr3 196533524 196533524 1 + C G rs73891516 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCGGTTATTGCCCCGCGACCGGATCATACGAA < 41bp 1 0.512014749522462 1 0.685320615768433 experiment 0.975970500955077 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533524 synonymous SNV . 0 12 hm5C_associated_SNPs_4736 0 0 1 0 2 Ribosome 1 0.500231643921089 0.629358768463134 0.999536712157822 hm5C_site_7729 DeepMRMD:0.629358768463134;iRNA_m5C:0.999536712157822 7730 chr3 196555944 196555944 1 + C T rs529256039 196555929 + 196555909 196555949 41 TTTAACAAATGTGAAAAAGTCAGTTTTAGAAATTTCGTGGT TTTAACAAATGTGAAAAAGTCAGTTTTAGAAATTTTGTGGT < 41bp 1 0.316829395610951 1 0.220136225223541 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PAK2 ENSG00000180370 UTR3 Human protein_coding chr3:196555929 chr3:196555944 . . 0 36 hm5C_associated_SNPs_4737 0 0 1 0 0 Ribosome 1 0.500231817012333 1 0.999536365975334 hm5C_site_7730 DeepMRMD:1;iRNA_m5C:0.999536365975334 7731 chr3 196555958 196555958 1 + C T rs4638940 196555970 + 196555950 196555990 41 AGTAAGTTCGGCATTTGTTACATGTATAGAGAGAAGACTAA AGTAAGTTTGGCATTTGTTACATGTATAGAGAGAAGACTAA < 41bp 1 0.194466348701882 1 0.250046759843826 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PAK2 ENSG00000180370 UTR3 Human protein_coding chr3:196555970 chr3:196555958 . . 0 9 hm5C_associated_SNPs_4738 0 0 1 0 0 Ribosome 1 0.500231649684906 1 0.999536700630187 hm5C_site_7731 DeepMRMD:1;iRNA_m5C:0.999536700630187 7732 chr3 196659648 196659648 1 + A C rs554525400 196659644 + 196659624 196659664 41 TTTTGTGGGGGTGTGGTATACCAAAGTAGCCAGTCACTGGG TTTTGTGGGGGTGTGGTATACCAACGTAGCCAGTCACTGGG < 41bp 1 0.262371285651812 1 0.280370235443115 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SENP5 ENSG00000119231 UTR3 Human protein_coding chr3:196659644 chr3:196659648 . . 0 25 hm5C_associated_SNPs_4739 0 0 1 1 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7732 DeepMRMD:1;iRNA_m5C:0.999536712157815 7733 chr3 196659660 196659660 1 + C T rs115329141 196659644 + 196659624 196659664 41 TTTTGTGGGGGTGTGGTATACCAAAGTAGCCAGTCACTGGG TTTTGTGGGGGTGTGGTATACCAAAGTAGCCAGTCATTGGG < 41bp 1 0.587307677217112 1 0.417506903409958 experiment 0.825384645565777 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SENP5 ENSG00000119231 UTR3 Human protein_coding chr3:196659644 chr3:196659660 . . 0 37 hm5C_associated_SNPs_4740 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7733 DeepMRMD:1;iRNA_m5C:0.999536712157815 7734 chr3 196669905 196669905 1 + C T rs576269647 196669911 + 196669891 196669931 41 TGGGCTGTGCGGGGCCGAGGCCGCTTGCTTTTCCTTCCGGG TGGGCTGTGCGGGGTCGAGGCCGCTTGCTTTTCCTTCCGGG < 41bp 1 0.283214172327868 1 0.339179337024689 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NCBP2-AS2 ENSG00000270170 ncRNA_exonic Human protein_coding chr3:196669911 chr3:196669905 . . 0 15 hm5C_associated_SNPs_4742 0 0 1 1 0 exosome 1 0.500231643920907 1 0.999536712158186 hm5C_site_7734 DeepMRMD:1;iRNA_m5C:0.999536712158186 7735 chr3 196669912 196669912 1 + C T rs335824 196669911 + 196669891 196669931 41 TGGGCTGTGCGGGGCCGAGGCCGCTTGCTTTTCCTTCCGGG TGGGCTGTGCGGGGCCGAGGCTGCTTGCTTTTCCTTCCGGG < 41bp 1 0.496849696852384 1 0.665314018726349 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NCBP2-AS2 ENSG00000270170 ncRNA_exonic Human protein_coding chr3:196669911 chr3:196669912 . . 0 22 hm5C_associated_SNPs_4743 0 0 1 1 0 exosome 1 0.500231643921092 0.669371962547302 0.999536712157816 hm5C_site_7735 DeepMRMD:0.669371962547302;iRNA_m5C:0.999536712157816 7736 chr4 126835 126835 1 + G A rs190661629 126832 + 126812 126852 41 GCGATTCACCTGCTCAGCCTCCTGAGTAGTTGGGATTACAG GCGATTCACCTGCTCAGCCTCCTAAGTAGTTGGGATTACAG < 41bp 1 0.122975660531742 1 0.0526202917098999 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF718 ENSG00000250312 ncRNA_exonic Human protein_coding chr4:126832 chr4:126835 . . 0 24 hm5C_associated_SNPs_4744 0 0 0 0 0 Cytosol 1 0.500231607906582 1 0.999536784186835 hm5C_site_7736 DeepMRMD:1;iRNA_m5C:0.999536784186835 7737 chr4 126835 126835 1 + G A rs190661629 126833 + 126813 126853 41 CGATTCACCTGCTCAGCCTCCTGAGTAGTTGGGATTACAGG CGATTCACCTGCTCAGCCTCCTAAGTAGTTGGGATTACAGG < 41bp 1 0.226560260795362 1 0.166997313499451 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF718 ENSG00000250312 ncRNA_exonic Human protein_coding chr4:126833 chr4:126835 . . 0 23 hm5C_associated_SNPs_4745 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7737 DeepMRMD:1;iRNA_m5C:0.999536712157815 7738 chr4 502741 502741 1 + G T rs201853289 502758 + 502738 502778 41 TCTGCGTTTGAAAGGAAACCCGGTGAGAATTTAGGAATGTT TCTTCGTTTGAAAGGAAACCCGGTGAGAATTTAGGAATGTT < 41bp 1 0.208129564768793 1 0.322696179151535 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:502758 chr4:502741 nonsynonymous SNV 0.970 0 4 hm5C_associated_SNPs_4746 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_7738 DeepMRMD:1;iRNA_m5C:0.999536712157816 7739 chr4 517563 517563 1 + G A rs114931121 517553 + 517533 517573 41 GACAAAGGCCACGGAAGCCCCTCTACCTCCGAAGTGCTCAG GACAAAGGCCACGGAAGCCCCTCTACCTCCAAAGTGCTCAG < 41bp 1 0.688806959241441 1 0.864963412284851 experiment 0.622386081517118 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:517553 chr4:517563 nonsynonymous SNV 0.000 0 31 hm5C_associated_SNPs_4747 0 0 1 0 0 Nucleus 1 0.500231643921014 0.270073175430298 0.999536712157971 hm5C_site_7739 DeepMRMD:0.270073175430298;iRNA_m5C:0.999536712157971 7740 chr4 727801 727801 1 + C G rs566212866 727818 + 727798 727838 41 GAGCGAAACACAGGAGAGACCCCACATTCCTCCCACGGAGC GAGGGAAACACAGGAGAGACCCCACATTCCTCCCACGGAGC < 41bp 1 0.123600913117592 1 0.419188678264618 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCGF3 ENSG00000185619 CDS Human protein_coding chr4:727818 chr4:727801 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_4748 0 0 1 0 0 Cytosol 1 0.500231644678597 1 0.999536710642805 hm5C_site_7740 DeepMRMD:1;iRNA_m5C:0.999536710642805 7741 chr4 760480 760480 1 + G A rs116108910 760465 + 760445 760485 41 CTTATGAAACACAACAGCAGCTCCCTGACTGGTTCGCCTTT CTTATGAAACACAACAGCAGCTCCCTGACTGGTTCACCTTT < 41bp 1 0.227666517773723 1 0.135688364505768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCGF3 ENSG00000249592 ncRNA_intronic Human antisense chr4:760465 chr4:760480 . . 0 36 hm5C_associated_SNPs_4749 0 0 1 0 1 Cytosol 1 0.500231643835554 1 0.999536712328893 hm5C_site_7741 DeepMRMD:1;iRNA_m5C:0.999536712328893 7742 chr4 980896 980896 1 + C A rs11248061 980893 + 980873 980913 41 ATGCGTCCCCTGCGCCCCCGCGCCGCGCTGCTGGCGCTCCT ATGCGTCCCCTGCGCCCCCGCGCAGCGCTGCTGGCGCTCCT < 41bp 1 0.628583685358014 1 0.837424397468567 experiment 0.742832629283973 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control IDUA ENSG00000127415 CDS Human protein_coding chr4:980893 chr4:980896 synonymous SNV . 0 24 hm5C_associated_SNPs_4750 2 0 1 0 0 chromatin 1 0.500231643856191 0.325151205062866 0.999536712287617 hm5C_site_7742 DeepMRMD:0.325151205062866;iRNA_m5C:0.999536712287617 not specified not specified 7743 chr4 980902 980902 1 + G A rs549738466 980893 + 980873 980913 41 ATGCGTCCCCTGCGCCCCCGCGCCGCGCTGCTGGCGCTCCT ATGCGTCCCCTGCGCCCCCGCGCCGCGCTACTGGCGCTCCT < 41bp 1 0.670453108850335 1 0.849528551101685 experiment 0.659093782299329 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control IDUA ENSG00000127415 CDS Human protein_coding chr4:980893 chr4:980902 synonymous SNV . 0 30 hm5C_associated_SNPs_4752 0 0 0 0 0 chromatin 1 0.500231643939355 0.30094289779663 0.999536712121291 hm5C_site_7743 DeepMRMD:0.30094289779663;iRNA_m5C:0.999536712121291 7744 chr4 980902 980902 1 + G A rs549738466 980895 + 980875 980915 41 GCGTCCCCTGCGCCCCCGCGCCGCGCTGCTGGCGCTCCTGG GCGTCCCCTGCGCCCCCGCGCCGCGCTACTGGCGCTCCTGG < 41bp 1 0.543457844881531 1 0.479308664798737 experiment 0.913084310236938 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74775;RNA-BisSeq;SNB19;Control IDUA ENSG00000127415 CDS Human protein_coding chr4:980895 chr4:980902 synonymous SNV . 0 28 hm5C_associated_SNPs_4753 0 0 0 0 0 chromatin 1 0.500231675618089 1 0.999536648763822 hm5C_site_7744 DeepMRMD:1;iRNA_m5C:0.999536648763822 7745 chr4 1018705 1018705 1 + C A rs4647930 1018696 + 1018676 1018716 41 TCCTCTCGCTCTTGCAGACCCAAAACCGCCAGGGCCACCTG TCCTCTCGCTCTTGCAGACCCAAAACCGCAAGGGCCACCTG < 41bp 1 0.652625270456188 1 0.298353612422943 experiment 0.694749459087623 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1018696 chr4:1018705 nonsynonymous SNV 0.139 2 30 hm5C_associated_SNPs_4755 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7745 DeepMRMD:1;iRNA_m5C:0.999536712157815 7746 chr4 1020391 1020391 1 + C G rs4647940 1020400 + 1020380 1020420 41 GCTCATCCCCACTGCATTCTCCCCCTGACACAGAGAAGGGG GCTCATCCCCAGTGCATTCTCCCCCTGACACAGAGAAGGGG < 41bp 1 0.174785395744404 1 0.218363404273987 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FGFRL1 ENSG00000127418 UTR3 Human protein_coding chr4:1020400 chr4:1020391 . . 0 12 hm5C_associated_SNPs_4756 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7746 DeepMRMD:1;iRNA_m5C:0.999536712157815 7747 chr4 1020391 1020391 1 + C G rs4647940 1020401 + 1020381 1020421 41 CTCATCCCCACTGCATTCTCCCCCTGACACAGAGAAGGGGC CTCATCCCCAGTGCATTCTCCCCCTGACACAGAGAAGGGGC < 41bp 1 0.152661979850142 1 0.0670932829380035 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FGFRL1 ENSG00000127418 UTR3 Human protein_coding chr4:1020401 chr4:1020391 . . 0 11 hm5C_associated_SNPs_4757 0 0 1 0 0 Ribosome 1 0.500229911645832 1 0.999540176708337 hm5C_site_7747 DeepMRMD:1;iRNA_m5C:0.999540176708337 7748 chr4 1020391 1020391 1 + C G rs4647940 1020404 + 1020384 1020424 41 ATCCCCACTGCATTCTCCCCCTGACACAGAGAAGGGGCCTT ATCCCCAGTGCATTCTCCCCCTGACACAGAGAAGGGGCCTT < 41bp 1 0.24346718414168 1 0.0796284675598145 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFRL1 ENSG00000127418 UTR3 Human protein_coding chr4:1020404 chr4:1020391 . . 0 8 hm5C_associated_SNPs_4758 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7748 DeepMRMD:1;iRNA_m5C:0.999536712157815 7749 chr4 1020575 1020575 1 + C A rs375839578 1020595 + 1020575 1020615 41 CACCCCACTGTCGTGGTGGCCCCAGATCTCTGTAATTTTAT AACCCCACTGTCGTGGTGGCCCCAGATCTCTGTAATTTTAT < 41bp 1 0.229602402636947 1 0.144010990858078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFRL1 ENSG00000127418 UTR3 Human protein_coding chr4:1020595 chr4:1020575 . . 0 1 hm5C_associated_SNPs_4759 0 0 1 0 0 Ribosome 1 0.500231643917843 1 0.999536712164313 hm5C_site_7749 DeepMRMD:1;iRNA_m5C:0.999536712164313 7750 chr4 1206232 1206232 1 + C T rs186239776 1206214 - 1206194 1206234 41 ACGGATGGACCCTCTCCCAGCAGGTACCCTCCGGGCGTGGT ACAGATGGACCCTCTCCCAGCAGGTACCCTCCGGGCGTGGT < 41bp 1 0.584910428424413 1 0.905652284622192 experiment 0.830179143151175 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTBP1-AS ENSG00000159692 intronic Human protein_coding chr4:1206214 chr4:1206232 . . 0 3 hm5C_associated_SNPs_4760 0 0 0 0 0 unknown 1 0.500231644004377 0.188695430755616 0.999536711991245 hm5C_site_7750 DeepMRMD:0.188695430755616;iRNA_m5C:0.999536711991245 7751 chr4 1346960 1346960 1 + C T rs115978884 1346962 + 1346942 1346982 41 TGCCCTTCGCTCCTCCTGCGCGGGCCAGGTGGGCCCCTGCC TGCCCTTCGCTCCTCCTGTGCGGGCCAGGTGGGCCCCTGCC < 41bp 1 0.683621067472592 1 0.921540856361389 experiment 0.632757865054817 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UVSSA ENSG00000163945 CDS Human protein_coding chr4:1346962 chr4:1346960 synonymous SNV . 0 19 hm5C_associated_SNPs_4761 0 0 1 0 0 Nucleus 1 0.500231643921092 0.156918287277222 0.999536712157815 hm5C_site_7751 DeepMRMD:0.156918287277222;iRNA_m5C:0.999536712157815 7752 chr4 1723279 1723279 1 + T C rs3134865 1723295 + 1723275 1723315 41 CAGCTAGGCTTGGCCCCCGGCGTGGAGCAGACGCGGACCCC CAGCCAGGCTTGGCCCCCGGCGTGGAGCAGACGCGGACCCC < 41bp 1 0.592127170555083 1 0.806971907615662 experiment 0.815745658889834 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TACC3 ENSG00000013810 UTR5 Human protein_coding chr4:1723295 chr4:1723279 . . 0 5 hm5C_associated_SNPs_4762 0 0 1 0 1 Cytosol 1 0.500231643921432 0.386056184768676 0.999536712157136 hm5C_site_7752 DeepMRMD:0.386056184768676;iRNA_m5C:0.999536712157136 7753 chr4 1723292 1723292 1 + C T rs115455600 1723295 + 1723275 1723315 41 CAGCTAGGCTTGGCCCCCGGCGTGGAGCAGACGCGGACCCC CAGCTAGGCTTGGCCCCTGGCGTGGAGCAGACGCGGACCCC < 41bp 1 0.636507250509817 1 0.880255877971649 experiment 0.726985498980367 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TACC3 ENSG00000013810 UTR5 Human protein_coding chr4:1723295 chr4:1723292 . . 0 18 hm5C_associated_SNPs_4763 0 0 1 0 1 Cytosol 1 0.500231643921092 0.239488244056702 0.999536712157815 hm5C_site_7753 DeepMRMD:0.239488244056702;iRNA_m5C:0.999536712157815 7754 chr4 1729556 1729556 1 + G A rs34205238 1729555 + 1729535 1729575 41 TTTGGGAGTGGCAGCTCCAGCGAGTCTGGCCCAGGTGCCCT TTTGGGAGTGGCAGCTCCAGCAAGTCTGGCCCAGGTGCCCT < 41bp 1 0.655774287980475 1 0.604906797409058 experiment 0.68845142403905 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1729555 chr4:1729556 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_4764 0 0 1 0 0 Cytosol 1 0.500231643921092 0.790186405181884 0.999536712157815 hm5C_site_7754 DeepMRMD:0.790186405181884;iRNA_m5C:0.999536712157815 7755 chr4 1976461 1976461 1 + C T rs548063398 1976452 + 1976432 1976472 41 GGTTTGGGGGTGTCCTGTCTCAGTGGACACAGGACACCACG GGTTTGGGGGTGTCCTGTCTCAGTGGACATAGGACACCACG < 41bp 1 0.585448007996594 1 0.92315149307251 experiment 0.829103984006812 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA22 ENSG00000249784 ncRNA_exonic Human scaRNA chr4:1976452 chr4:1976461 . . 0 30 hm5C_associated_SNPs_4765 0 0 1 0 0 unknown 1 0.500231643922333 0.15369701385498 0.999536712155334 hm5C_site_7755 DeepMRMD:0.15369701385498;iRNA_m5C:0.999536712155334 7756 chr4 1976461 1976461 1 + C T rs548063398 1976468 + 1976448 1976488 41 GTCTCAGTGGACACAGGACACCACGGTTTTCAGTACAACAA GTCTCAGTGGACATAGGACACCACGGTTTTCAGTACAACAA < 41bp 1 0.173096050750928 1 0.119853407144547 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA22 ENSG00000249784 ncRNA_exonic Human scaRNA chr4:1976468 chr4:1976461 . . 0 14 hm5C_associated_SNPs_4766 0 0 1 0 0 unknown 1 0.500231644165875 1 0.99953671166825 hm5C_site_7756 DeepMRMD:1;iRNA_m5C:0.99953671166825 7757 chr4 1976461 1976461 1 + C T rs548063398 1976469 + 1976449 1976489 41 TCTCAGTGGACACAGGACACCACGGTTTTCAGTACAACAAG TCTCAGTGGACATAGGACACCACGGTTTTCAGTACAACAAG < 41bp 1 0.525765821753527 1 0.147775411605835 experiment 0.948468356492946 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA22 ENSG00000249784 ncRNA_exonic Human scaRNA chr4:1976469 chr4:1976461 . . 0 13 hm5C_associated_SNPs_4767 0 0 1 0 0 unknown 1 0.500231825531576 1 0.999536348936847 hm5C_site_7757 DeepMRMD:1;iRNA_m5C:0.999536348936847 7758 chr4 1980784 1980784 1 + C T rs538719785 1980777 + 1980757 1980797 41 CAGGCCTCCTCGGGAGGGAGCGCCTCCCCACCACTGAGCCA CAGGCCTCCTCGGGAGGGAGCGCCTCCTCACCACTGAGCCA < 41bp 1 0.340329577171792 1 0.195168226957321 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NSD2 ENSG00000109685 UTR3 Human protein_coding chr4:1980777 chr4:1980784 . . 0 28 hm5C_associated_SNPs_4768 1 0 1 0 0 Nucleus 1 0.500231643923581 1 0.999536712152837 hm5C_site_7758 DeepMRMD:1;iRNA_m5C:0.999536712152837 4p partial monosomy syndrome 4p partial monosomy syndrome 7759 chr4 1981310 1981310 1 + A G rs115893772 1981329 + 1981309 1981349 41 AATAACACGTCCACTTTCAACGTGTAGTTTACGCGGAGCAC AGTAACACGTCCACTTTCAACGTGTAGTTTACGCGGAGCAC < 41bp 1 0.170672222259546 1 0.364517033100128 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NSD2 ENSG00000109685 UTR3 Human protein_coding chr4:1981329 chr4:1981310 . . 0 2 hm5C_associated_SNPs_4769 1 0 1 0 0 Nucleus 1 0.500231644092293 1 0.999536711815415 hm5C_site_7759 DeepMRMD:1;iRNA_m5C:0.999536711815415 4p partial monosomy syndrome 4p partial monosomy syndrome 7760 chr4 1983553 1983553 1 + C G rs145672223 1983539 + 1983519 1983559 41 ATGCAAATGACTGTCAGTTGCCAAATATCTTGATCCTATGA ATGCAAATGACTGTCAGTTGCCAAATATCTTGATGCTATGA < 41bp 1 0.073337011409667 1 0.387751668691635 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NSD2 ENSG00000109685 UTR3 Human protein_coding chr4:1983539 chr4:1983553 . . 0 35 hm5C_associated_SNPs_4770 1 0 1 0 0 Nucleus 1 0.50023166808996 1 0.999536663820081 hm5C_site_7760 DeepMRMD:1;iRNA_m5C:0.999536663820081 4p partial monosomy syndrome 4p partial monosomy syndrome 7761 chr4 1983556 1983556 1 + A G rs2187692 1983539 + 1983519 1983559 41 ATGCAAATGACTGTCAGTTGCCAAATATCTTGATCCTATGA ATGCAAATGACTGTCAGTTGCCAAATATCTTGATCCTGTGA < 41bp 1 0.080021023279163 1 0.494804263114929 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NSD2 ENSG00000109685 UTR3 Human protein_coding chr4:1983539 chr4:1983556 . . 0 38 hm5C_associated_SNPs_4771 1 0 1 0 0 Nucleus 1 0.500231659137738 1 0.999536681724525 hm5C_site_7761 DeepMRMD:1;iRNA_m5C:0.999536681724525 4p partial monosomy syndrome 4p partial monosomy syndrome 7762 chr4 1983731 1983731 1 + A G rs148896652 1983738 + 1983718 1983758 41 TCAGATTCCTTTTAGGAATACTGGGTGCTGTCACCAGGTTT TCAGATTCCTTTTGGGAATACTGGGTGCTGTCACCAGGTTT < 41bp 1 0.225300794367 1 0.508431196212769 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NSD2 ENSG00000109685 UTR3 Human protein_coding chr4:1983738 chr4:1983731 . . 0 14 hm5C_associated_SNPs_4772 0 0 1 0 0 Nucleus 1 0.500231643917864 0.983137607574462 0.999536712164271 hm5C_site_7762 DeepMRMD:0.983137607574462;iRNA_m5C:0.999536712164271 7763 chr4 2066234 2066234 1 + C T rs547216464 2066222 + 2066202 2066242 41 CTCTGCAGCAGATCCCGGGGCCAGGCTCCGGCCCCGCCTGC CTCTGCAGCAGATCCCGGGGCCAGGCTCCGGCTCCGCCTGC < 41bp 1 0.443946903438861 1 0.398957461118698 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NAT8L ENSG00000185818 UTR3 Human protein_coding chr4:2066222 chr4:2066234 . . 0 33 hm5C_associated_SNPs_4773 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7763 DeepMRMD:1;iRNA_m5C:0.999536712157815 7764 chr4 2066234 2066234 1 + C T rs547216464 2066223 + 2066203 2066243 41 TCTGCAGCAGATCCCGGGGCCAGGCTCCGGCCCCGCCTGCG TCTGCAGCAGATCCCGGGGCCAGGCTCCGGCTCCGCCTGCG < 41bp 1 0.573626765592193 1 0.717163860797882 experiment 0.852746468815614 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NAT8L ENSG00000185818 UTR3 Human protein_coding chr4:2066223 chr4:2066234 . . 0 32 hm5C_associated_SNPs_4774 0 0 0 0 0 Ribosome 1 0.500231643921902 0.565672278404236 0.999536712156196 hm5C_site_7764 DeepMRMD:0.565672278404236;iRNA_m5C:0.999536712156196 7765 chr4 2066234 2066234 1 + C T rs547216464 2066233 + 2066213 2066253 41 ATCCCGGGGCCAGGCTCCGGCCCCGCCTGCGGCCCCAGCGC ATCCCGGGGCCAGGCTCCGGCTCCGCCTGCGGCCCCAGCGC < 41bp 1 0.608768675675493 1 0.78495466709137 experiment 0.782462648649014 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAT8L ENSG00000185818 UTR3 Human protein_coding chr4:2066233 chr4:2066234 . . 0 22 hm5C_associated_SNPs_4775 0 0 0 0 0 Ribosome 1 0.5002315810988 0.43009066581726 0.9995368378024 hm5C_site_7765 DeepMRMD:0.43009066581726;iRNA_m5C:0.9995368378024 7766 chr4 2066234 2066234 1 + C T rs547216464 2066235 + 2066215 2066255 41 CCCGGGGCCAGGCTCCGGCCCCGCCTGCGGCCCCAGCGCCA CCCGGGGCCAGGCTCCGGCTCCGCCTGCGGCCCCAGCGCCA < 41bp 1 0.224004784771295 1 0.090918242931366 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAT8L ENSG00000185818 UTR3 Human protein_coding chr4:2066235 chr4:2066234 . . 0 20 hm5C_associated_SNPs_4776 0 0 0 0 0 Ribosome 1 0.500232322069977 1 0.999535355860046 hm5C_site_7766 DeepMRMD:1;iRNA_m5C:0.999535355860046 7767 chr4 2066234 2066234 1 + C T rs547216464 2066236 + 2066216 2066256 41 CCGGGGCCAGGCTCCGGCCCCGCCTGCGGCCCCAGCGCCAC CCGGGGCCAGGCTCCGGCTCCGCCTGCGGCCCCAGCGCCAC < 41bp 1 0.530630808746462 1 0.221503973007202 experiment 0.938738382507077 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAT8L ENSG00000185818 UTR3 Human protein_coding chr4:2066236 chr4:2066234 . . 0 19 hm5C_associated_SNPs_4777 0 0 0 0 0 Ribosome 1 0.500231643921243 1 0.999536712157514 hm5C_site_7767 DeepMRMD:1;iRNA_m5C:0.999536712157514 7768 chr4 2068648 2068648 1 + C T rs188873748 2068630 + 2068610 2068650 41 GGCGGGAGGGGCTGACAGTGCCTGGGGCCAGAGCTGGGCGA GGCGGGAGGGGCTGACAGTGCCTGGGGCCAGAGCTGGGTGA < 41bp 1 0.522140448663316 1 0.568256497383118 experiment 0.955719102673368 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAT8L ENSG00000185818 UTR3 Human protein_coding chr4:2068630 chr4:2068648 . . 0 39 hm5C_associated_SNPs_4778 0 0 1 0 0 Ribosome 1 0.500231643921088 0.863487005233764 0.999536712157825 hm5C_site_7768 DeepMRMD:0.863487005233764;iRNA_m5C:0.999536712157825 7769 chr4 2828225 2828225 1 + C G rs111215831 2828235 + 2828215 2828255 41 GTGTGCATGTCTGCGTGTTGCTCTGTGTGTGTGTGCATGTC GTGTGCATGTGTGCGTGTTGCTCTGTGTGTGTGTGCATGTC < 41bp 1 0.206887994755783 1 0.0203615128993988 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828235 chr4:2828225 . . 0 11 hm5C_associated_SNPs_4779 0 0 1 0 0 Nucleus 1 0.50156345216694 1 0.99687309566612 hm5C_site_7769 DeepMRMD:1;iRNA_m5C:0.99687309566612 7770 chr4 2828225 2828225 1 + C G rs111215831 2828237 + 2828217 2828257 41 GTGCATGTCTGCGTGTTGCTCTGTGTGTGTGTGCATGTCCG GTGCATGTGTGCGTGTTGCTCTGTGTGTGTGTGCATGTCCG < 41bp 1 0.332861744100005 1 0.0499502122402191 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828237 chr4:2828225 . . 0 9 hm5C_associated_SNPs_4780 0 0 1 0 0 Nucleus 1 0.501593732527137 1 0.996812534945726 hm5C_site_7770 DeepMRMD:1;iRNA_m5C:0.996812534945726 7771 chr4 2828236 2828236 1 + T C rs570469517 2828235 + 2828215 2828255 41 GTGTGCATGTCTGCGTGTTGCTCTGTGTGTGTGTGCATGTC GTGTGCATGTCTGCGTGTTGCCCTGTGTGTGTGTGCATGTC < 41bp 1 0.0974678195896725 1 0.0139634907245636 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828235 chr4:2828236 . . 0 22 hm5C_associated_SNPs_4781 0 0 1 0 0 Nucleus 1 0.500214135593148 1 0.999571728813704 hm5C_site_7771 DeepMRMD:1;iRNA_m5C:0.999571728813704 7772 chr4 2828236 2828236 1 + T C rs570469517 2828237 + 2828217 2828257 41 GTGCATGTCTGCGTGTTGCTCTGTGTGTGTGTGCATGTCCG GTGCATGTCTGCGTGTTGCCCTGTGTGTGTGTGCATGTCCG < 41bp 1 0.25807253722578 1 0.0245745480060577 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828237 chr4:2828236 . . 0 20 hm5C_associated_SNPs_4782 0 0 1 0 0 Nucleus 1 0.500232347520949 1 0.999535304958102 hm5C_site_7772 DeepMRMD:1;iRNA_m5C:0.999535304958102 7773 chr4 2828236 2828236 1 + T C rs570469517 2828250 + 2828230 2828270 41 TGTTGCTCTGTGTGTGTGTGCATGTCCGCGTGTTGCTCTGT TGTTGCCCTGTGTGTGTGTGCATGTCCGCGTGTTGCTCTGT < 41bp 1 0.119955060479306 1 0.116122007369995 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828250 chr4:2828236 . . 0 7 hm5C_associated_SNPs_4783 0 0 1 0 0 Nucleus 1 0.500485336261238 1 0.999029327477524 hm5C_site_7773 DeepMRMD:1;iRNA_m5C:0.999029327477524 7774 chr4 2828236 2828236 1 + T C rs570469517 2828255 + 2828235 2828275 41 CTCTGTGTGTGTGTGCATGTCCGCGTGTTGCTCTGTGTGTG CCCTGTGTGTGTGTGCATGTCCGCGTGTTGCTCTGTGTGTG < 41bp 1 0.229505245025922 1 0.261593401432037 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828255 chr4:2828236 . . 0 2 hm5C_associated_SNPs_4784 0 0 1 0 0 Nucleus 1 0.500655876675603 1 0.998688246648794 hm5C_site_7774 DeepMRMD:1;iRNA_m5C:0.998688246648794 7775 chr4 2828236 2828236 1 + T C rs570469517 2828256 + 2828236 2828276 41 TCTGTGTGTGTGTGCATGTCCGCGTGTTGCTCTGTGTGTGT CCTGTGTGTGTGTGCATGTCCGCGTGTTGCTCTGTGTGTGT < 41bp 1 0.351161898668822 1 0.382700860500336 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828256 chr4:2828236 . . 0 1 hm5C_associated_SNPs_4785 0 0 1 0 0 Nucleus 1 0.500255061119656 1 0.999489877760688 hm5C_site_7775 DeepMRMD:1;iRNA_m5C:0.999489877760688 7776 chr4 2828251 2828251 1 + A G rs549512278 2828235 + 2828215 2828255 41 GTGTGCATGTCTGCGTGTTGCTCTGTGTGTGTGTGCATGTC GTGTGCATGTCTGCGTGTTGCTCTGTGTGTGTGTGCGTGTC < 41bp 1 0.213711688070963 1 0.0368846654891968 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828235 chr4:2828251 . . 0 37 hm5C_associated_SNPs_4786 0 0 1 0 0 Nucleus 1 0.500228030403512 1 0.999543939192977 hm5C_site_7776 DeepMRMD:1;iRNA_m5C:0.999543939192977 7777 chr4 2828251 2828251 1 + A G rs549512278 2828237 + 2828217 2828257 41 GTGCATGTCTGCGTGTTGCTCTGTGTGTGTGTGCATGTCCG GTGCATGTCTGCGTGTTGCTCTGTGTGTGTGTGCGTGTCCG < 41bp 1 0.313473945583135 1 0.044780433177948 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828237 chr4:2828251 . . 0 35 hm5C_associated_SNPs_4787 0 0 1 0 0 Nucleus 1 0.501118642918768 1 0.997762714162465 hm5C_site_7777 DeepMRMD:1;iRNA_m5C:0.997762714162465 7778 chr4 2828251 2828251 1 + A G rs549512278 2828250 + 2828230 2828270 41 TGTTGCTCTGTGTGTGTGTGCATGTCCGCGTGTTGCTCTGT TGTTGCTCTGTGTGTGTGTGCGTGTCCGCGTGTTGCTCTGT < 41bp 1 0.130084285660752 1 0.143195480108261 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828250 chr4:2828251 . . 0 22 hm5C_associated_SNPs_4788 0 0 1 0 0 Nucleus 1 0.500233638860341 1 0.999532722279318 hm5C_site_7778 DeepMRMD:1;iRNA_m5C:0.999532722279318 7779 chr4 2828251 2828251 1 + A G rs549512278 2828255 + 2828235 2828275 41 CTCTGTGTGTGTGTGCATGTCCGCGTGTTGCTCTGTGTGTG CTCTGTGTGTGTGTGCGTGTCCGCGTGTTGCTCTGTGTGTG < 41bp 1 0.191613104455139 1 0.434805661439896 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828255 chr4:2828251 . . 0 17 hm5C_associated_SNPs_4789 0 0 1 0 0 Nucleus 1 0.50190274949094 1 0.996194501018121 hm5C_site_7779 DeepMRMD:1;iRNA_m5C:0.996194501018121 7780 chr4 2828251 2828251 1 + A G rs549512278 2828256 + 2828236 2828276 41 TCTGTGTGTGTGTGCATGTCCGCGTGTTGCTCTGTGTGTGT TCTGTGTGTGTGTGCGTGTCCGCGTGTTGCTCTGTGTGTGT < 41bp 1 0.374353008137513 1 0.431885808706284 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828256 chr4:2828251 . . 0 16 hm5C_associated_SNPs_4790 0 0 1 0 0 Nucleus 1 0.500897001900535 1 0.99820599619893 hm5C_site_7780 DeepMRMD:1;iRNA_m5C:0.99820599619893 7781 chr4 2828257 2828257 1 + G A rs569678197 2828237 + 2828217 2828257 41 GTGCATGTCTGCGTGTTGCTCTGTGTGTGTGTGCATGTCCG GTGCATGTCTGCGTGTTGCTCTGTGTGTGTGTGCATGTCCA < 41bp 1 0.289565637485607 1 0.0327355861663818 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828237 chr4:2828257 . . 0 41 hm5C_associated_SNPs_4791 0 0 1 0 0 Nucleus 1 0.504157265319031 1 0.991685469361938 hm5C_site_7781 DeepMRMD:1;iRNA_m5C:0.991685469361938 7782 chr4 2828257 2828257 1 + G A rs569678197 2828250 + 2828230 2828270 41 TGTTGCTCTGTGTGTGTGTGCATGTCCGCGTGTTGCTCTGT TGTTGCTCTGTGTGTGTGTGCATGTCCACGTGTTGCTCTGT < 41bp 1 0.103239956884579 1 0.140600681304932 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828250 chr4:2828257 . . 0 28 hm5C_associated_SNPs_4792 0 0 1 0 0 Nucleus 1 0.500233855035313 1 0.999532289929373 hm5C_site_7782 DeepMRMD:1;iRNA_m5C:0.999532289929373 7783 chr4 2828257 2828257 1 + G A rs569678197 2828255 + 2828235 2828275 41 CTCTGTGTGTGTGTGCATGTCCGCGTGTTGCTCTGTGTGTG CTCTGTGTGTGTGTGCATGTCCACGTGTTGCTCTGTGTGTG < 41bp 1 0.134202683462391 1 0.11430025100708 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828255 chr4:2828257 . . 0 23 hm5C_associated_SNPs_4793 0 0 1 0 0 Nucleus 1 0.501840459718743 1 0.996319080562514 hm5C_site_7783 DeepMRMD:1;iRNA_m5C:0.996319080562514 7784 chr4 2828257 2828257 1 + G A rs569678197 2828256 + 2828236 2828276 41 TCTGTGTGTGTGTGCATGTCCGCGTGTTGCTCTGTGTGTGT TCTGTGTGTGTGTGCATGTCCACGTGTTGCTCTGTGTGTGT < 41bp 1 0.296445860510172 1 0.259749680757523 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828256 chr4:2828257 . . 0 22 hm5C_associated_SNPs_4794 0 0 1 0 0 Nucleus 1 0.500462825440338 1 0.999074349119324 hm5C_site_7784 DeepMRMD:1;iRNA_m5C:0.999074349119324 7785 chr4 2828527 2828527 1 + G C rs62637096 2828513 + 2828493 2828533 41 CGTGTCCGTGTGTCGCTCGTCTGTGTGTGAACATGTGTGCT CGTGTCCGTGTGTCGCTCGTCTGTGTGTGAACATCTGTGCT < 41bp 1 0.269479193961833 1 0.18495962023735 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SH3BP2 ENSG00000087266 intronic Human protein_coding chr4:2828513 chr4:2828527 . . 0 35 hm5C_associated_SNPs_4795 0 0 1 0 0 Nucleus 1 0.501355213690731 1 0.997289572618538 hm5C_site_7785 DeepMRMD:1;iRNA_m5C:0.997289572618538 7786 chr4 2943361 2943361 1 + T C rs1054090 2943341 - 2943321 2943361 41 AAGCCCTCCTCACGGATCACCTGGCGGACTGCAGCCACCCG GAGCCCTCCTCACGGATCACCTGGCGGACTGCAGCCACCCG < 41bp 1 0.587904340182473 1 0.642295062541962 experiment 0.824191319635053 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOP14 ENSG00000087269 CDS Human protein_coding chr4:2943341 chr4:2943361 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_4796 0 0 1 0 2 Nucleus 1 0.500231644907686 0.715409874916076 0.999536710184628 hm5C_site_7786 DeepMRMD:0.715409874916076;iRNA_m5C:0.999536710184628 7787 chr4 2968000 2968000 1 + G A rs571539189 2967995 + 2967975 2968015 41 CTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGGGCGCCT CTAAAAATACAAAAATTAGCCGGGCATGGTGGCGGGCGCCT < 41bp 1 0.420199924207397 1 0.734945774078369 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRK4 ENSG00000125388 UTR3 Human protein_coding chr4:2967995 chr4:2968000 . . 0 26 hm5C_associated_SNPs_4797 0 0 0 0 0 Cytosol 1 0.500231643921091 0.530108451843262 0.999536712157818 hm5C_site_7787 DeepMRMD:0.530108451843262;iRNA_m5C:0.999536712157818 7788 chr4 2968004 2968004 1 + T C rs372448809 2967995 + 2967975 2968015 41 CTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGGGCGCCT CTAAAAATACAAAAATTAGCCGGGCGTGGCGGCGGGCGCCT < 41bp 1 0.53345487563162 1 0.886606812477112 experiment 0.933090248736759 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRK4 ENSG00000125388 UTR3 Human protein_coding chr4:2967995 chr4:2968004 . . 0 30 hm5C_associated_SNPs_4798 0 0 0 0 0 Cytosol 1 0.500231643921092 0.226786375045776 0.999536712157815 hm5C_site_7788 DeepMRMD:0.226786375045776;iRNA_m5C:0.999536712157815 7789 chr4 2968012 2968012 1 + G A rs556270130 2967995 + 2967975 2968015 41 CTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGGGCGCCT CTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGGGCACCT < 41bp 1 0.478015010489831 1 0.867408037185669 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRK4 ENSG00000125388 UTR3 Human protein_coding chr4:2967995 chr4:2968012 . . 0 38 hm5C_associated_SNPs_4799 0 0 0 0 0 Cytosol 1 0.500231643920542 0.265183925628662 0.999536712158916 hm5C_site_7789 DeepMRMD:0.265183925628662;iRNA_m5C:0.999536712158916 7790 chr4 3107143 3107143 1 + G C rs368339242 3107132 + 3107112 3107152 41 CCCTGTGGAGGTTTGCTGAGCTGGCTCACCTGGTTCGGCCT CCCTGTGGAGGTTTGCTGAGCTGGCTCACCTCGTTCGGCCT < 41bp 1 0.313303266869334 1 0.379713177680969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3107132 chr4:3107143 synonymous SNV . 0 32 hm5C_associated_SNPs_4800 0 0 1 0 2 Cytosol 1 0.500231717932729 1 0.999536564134541 hm5C_site_7790 DeepMRMD:1;iRNA_m5C:0.999536564134541 7791 chr4 3148653 3148653 1 + T G rs1143646 3148659 + 3148639 3148679 41 CAAGATGCTTTGATTTTGGCCGGAAACTTGCTTGCAGGTAC CAAGATGCTTTGATGTTGGCCGGAAACTTGCTTGCAGGTAC < 41bp 1 0.332918863776149 1 0.527097404003143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3148659 chr4:3148653 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_4801 0 0 1 0 1 Cytosol 1 0.500231644412048 0.945805191993714 0.999536711175903 hm5C_site_7791 DeepMRMD:0.945805191993714;iRNA_m5C:0.999536711175903 7792 chr4 3242045 3242045 1 + A T rs189003905 3242056 + 3242036 3242076 41 CTGCACCCCATGTGGGTGACCAGGTCCTTTCTCCTGATAGT CTGCACCCCTTGTGGGTGACCAGGTCCTTTCTCCTGATAGT < 41bp 1 0.306941386724044 1 0.603508174419403 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTT ENSG00000197386 UTR3 Human protein_coding chr4:3242056 chr4:3242045 . . 0 10 hm5C_associated_SNPs_4802 0 0 1 0 0 Cytosol 1 0.500231889040917 0.792983651161194 0.999536221918167 hm5C_site_7792 DeepMRMD:0.792983651161194;iRNA_m5C:0.999536221918167 7793 chr4 3245057 3245057 1 + C T rs2530595 3245066 + 3245046 3245086 41 TCCTCCCTCTGCGGGGAGGACCCGGGACCACAGCTGCTGGC TCCTCCCTCTGTGGGGAGGACCCGGGACCACAGCTGCTGGC < 41bp 1 0.598705816641319 1 0.557541131973267 experiment 0.802588366717363 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTT ENSG00000197386 UTR3 Human protein_coding chr4:3245066 chr4:3245057 . . 0 12 hm5C_associated_SNPs_4803 0 0 0 0 0 Cytosol 1 0.500231643921093 0.884917736053466 0.999536712157815 hm5C_site_7793 DeepMRMD:0.884917736053466;iRNA_m5C:0.999536712157815 7794 chr4 3495182 3495182 1 + C A rs77513082 3495163 + 3495143 3495183 41 CAGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCG CAGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTAG < 41bp 1 0.0274156186321667 1 0.0505809485912323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495163 chr4:3495182 stopgain 0.351 0 40 hm5C_associated_SNPs_4804 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7794 DeepMRMD:1;iRNA_m5C:0.999536712157815 7795 chr4 3495182 3495182 1 + C A rs77513082 3495164 + 3495144 3495184 41 AGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCGG AGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTAGG < 41bp 1 0.124308604708499 1 0.137749522924423 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495164 chr4:3495182 stopgain 0.351 0 39 hm5C_associated_SNPs_4805 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7795 DeepMRMD:1;iRNA_m5C:0.999536712157815 7796 chr4 4861547 4861547 1 + C T rs574541297 4861528 + 4861508 4861548 41 GAGGGTCCGCCCGGCCAGGGCCCCGGGCGCTCGCAGAGGCC GAGGGTCCGCCCGGCCAGGGCCCCGGGCGCTCGCAGAGGTC < 41bp 1 0.598349152360744 1 0.384065806865692 experiment 0.803301695278512 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSX1 ENSG00000163132 UTR5 Human protein_coding chr4:4861528 chr4:4861547 . . 0 40 hm5C_associated_SNPs_4806 0 0 1 0 0 Cytosol 1 0.500231372188397 1 0.999537255623206 hm5C_site_7796 DeepMRMD:1;iRNA_m5C:0.999537255623206 7797 chr4 4861547 4861547 1 + C T rs574541297 4861535 + 4861515 4861555 41 CGCCCGGCCAGGGCCCCGGGCGCTCGCAGAGGCCGGCCGCG CGCCCGGCCAGGGCCCCGGGCGCTCGCAGAGGTCGGCCGCG < 41bp 1 0.47316596388617 1 0.140233665704727 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control MSX1 ENSG00000163132 UTR5 Human protein_coding chr4:4861535 chr4:4861547 . . 0 33 hm5C_associated_SNPs_4808 0 0 1 0 0 Cytosol 1 0.500231644231225 1 0.99953671153755 hm5C_site_7797 DeepMRMD:1;iRNA_m5C:0.99953671153755 7798 chr4 4861548 4861548 1 + C A rs540547022 4861528 + 4861508 4861548 41 GAGGGTCCGCCCGGCCAGGGCCCCGGGCGCTCGCAGAGGCC GAGGGTCCGCCCGGCCAGGGCCCCGGGCGCTCGCAGAGGCA < 41bp 1 0.595220460979253 1 0.330273568630219 experiment 0.809559078041495 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSX1 ENSG00000163132 UTR5 Human protein_coding chr4:4861528 chr4:4861548 . . 0 41 hm5C_associated_SNPs_4810 0 0 1 0 0 Cytosol 1 0.500231644333481 1 0.999536711333037 hm5C_site_7798 DeepMRMD:1;iRNA_m5C:0.999536711333037 7799 chr4 4861548 4861548 1 + C A rs540547022 4861535 + 4861515 4861555 41 CGCCCGGCCAGGGCCCCGGGCGCTCGCAGAGGCCGGCCGCG CGCCCGGCCAGGGCCCCGGGCGCTCGCAGAGGCAGGCCGCG < 41bp 1 0.454239142898698 1 0.0850464701652527 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control MSX1 ENSG00000163132 UTR5 Human protein_coding chr4:4861535 chr4:4861548 . . 0 34 hm5C_associated_SNPs_4812 0 0 1 0 0 Cytosol 1 0.500231866541834 1 0.999536266916332 hm5C_site_7799 DeepMRMD:1;iRNA_m5C:0.999536266916332 7800 chr4 4861569 4861569 1 + C G rs560169358 4861574 + 4861554 4861594 41 CGCTCCCAGCCCGCCCGGAGCCCATGCCCGGCGGCTGGCCA CGCTCCCAGCCCGCCGGGAGCCCATGCCCGGCGGCTGGCCA < 41bp 1 0.499577759355938 1 0.08652064204216 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MSX1 ENSG00000163132 UTR5 Human protein_coding chr4:4861574 chr4:4861569 . . 0 16 hm5C_associated_SNPs_4814 0 0 1 0 0 Cytosol 1 0.500231643928476 1 0.999536712143048 hm5C_site_7800 DeepMRMD:1;iRNA_m5C:0.999536712143048 7801 chr4 4861569 4861569 1 + C G rs560169358 4861575 + 4861555 4861595 41 GCTCCCAGCCCGCCCGGAGCCCATGCCCGGCGGCTGGCCAG GCTCCCAGCCCGCCGGGAGCCCATGCCCGGCGGCTGGCCAG < 41bp 1 0.659398833393772 1 0.0843491554260254 experiment 0.681202333212455 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MSX1 ENSG00000163132 UTR5 Human protein_coding chr4:4861575 chr4:4861569 . . 0 15 hm5C_associated_SNPs_4815 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7801 DeepMRMD:1;iRNA_m5C:0.999536712157815 7802 chr4 4861569 4861569 1 + C G rs560169358 4861576 + 4861556 4861596 41 CTCCCAGCCCGCCCGGAGCCCATGCCCGGCGGCTGGCCAGT CTCCCAGCCCGCCGGGAGCCCATGCCCGGCGGCTGGCCAGT < 41bp 1 0.563591940150538 1 0.101165950298309 experiment 0.872816119698924 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MSX1 ENSG00000163132 UTR5 Human protein_coding chr4:4861576 chr4:4861569 . . 0 14 hm5C_associated_SNPs_4816 0 0 1 0 0 Cytosol 1 0.500231643925128 1 0.999536712149745 hm5C_site_7802 DeepMRMD:1;iRNA_m5C:0.999536712149745 7803 chr4 4861712 4861712 1 + C T rs530217423 4861724 + 4861704 4861744 41 GGGAGGCGCGGGCCAGGCCCCCAGCGCCGCCGCGGCCACGG GGGAGGCGTGGGCCAGGCCCCCAGCGCCGCCGCGGCCACGG < 41bp 1 0.612075343279378 1 0.721540331840515 experiment 0.775849313441244 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSX1 ENSG00000163132 CDS Human protein_coding chr4:4861724 chr4:4861712 nonsynonymous SNV 0.553 1 9 hm5C_associated_SNPs_4817 0 0 1 0 0 Cytosol 1 0.500231643904928 0.55691933631897 0.999536712190143 hm5C_site_7803 DeepMRMD:0.55691933631897;iRNA_m5C:0.999536712190143 7804 chr4 4865370 4865370 1 + T C rs114279217 4865364 + 4865344 4865384 41 AGGAAGATGAATCCTAGCTTCTTCCATTGGAAAATTTAAGA AGGAAGATGAATCCTAGCTTCTTCCACTGGAAAATTTAAGA < 41bp 1 0.12100844712987 1 0.194604277610779 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSX1 ENSG00000163132 UTR3 Human protein_coding chr4:4865364 chr4:4865370 . . 0 27 hm5C_associated_SNPs_4818 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7804 DeepMRMD:1;iRNA_m5C:0.999536712157815 7805 chr4 5733336 5733336 1 + G A rs113002470 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCAGCCACACCTTCCTCCGGGTGAACGCCTTCCC < 41bp 1 0.0347246375251189 1 0.0503665506839752 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733336 nonsynonymous SNV 0.036 3 14 hm5C_associated_SNPs_4819 0 0 1 0 1 Nucleus 1 0.500231643893768 1 0.999536712212465 hm5C_site_7805 DeepMRMD:1;iRNA_m5C:0.999536712212465 7806 chr4 6279191 6279191 1 + C G rs71524363 6279179 + 6279159 6279199 41 ACCTTGACTTTTCTTCCAGGCAGGATGGACTCCAACACTGC ACCTTGACTTTTCTTCCAGGCAGGATGGACTCGAACACTGC < 41bp 1 0.686527627782378 1 0.771250605583191 experiment 0.626944744435244 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WFS1 ENSG00000109501 CDS Human protein_coding chr4:6279179 chr4:6279191 synonymous SNV . 0 33 hm5C_associated_SNPs_4820 0 0 1 0 2 nucleus 1 0.500231643913909 0.457498788833618 0.999536712172183 hm5C_site_7806 DeepMRMD:0.457498788833618;iRNA_m5C:0.999536712172183 7807 chr4 6596385 6596385 1 + A G rs150681679 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTGCTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG < 41bp 1 0.169688828118512 1 0.0338751971721649 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596385 nonsynonymous SNV 0.876 5 3 hm5C_associated_SNPs_4821 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392108 1 0.999536712157841 hm5C_site_7807 DeepMRMD:1;iRNA_m5C:0.999536712157841 7808 chr4 6598976 6598976 1 + G A rs6857025 6598971 + 6598951 6598991 41 TGTGGCCGGCCCCCCGTGGGCATCTGGACCCCACCTGGGCC TGTGGCCGGCCCCCCGTGGGCATCTAGACCCCACCTGGGCC < 41bp 1 0.248786549463619 1 0.136831223964691 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6598971 chr4:6598976 synonymous SNV . 0 26 hm5C_associated_SNPs_4822 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921168 1 0.999536712157664 hm5C_site_7808 DeepMRMD:1;iRNA_m5C:0.999536712157664 7809 chr4 6621488 6621488 1 + G T rs186590468 6621468 + 6621448 6621488 41 GTCCTCATCTGTAAAGTACACGGCCAGTCCTGTCCTCGCAG GTCCTCATCTGTAAAGTACACGGCCAGTCCTGTCCTCGCAT < 41bp 1 0.345813272716859 1 0.116119354963303 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAN2B2 ENSG00000013288 UTR3 Human protein_coding chr4:6621468 chr4:6621488 . . 0 41 hm5C_associated_SNPs_4823 0 0 0 0 0 Endoplasmic reticulum 1 0.50023164380324 1 0.99953671239352 hm5C_site_7809 DeepMRMD:1;iRNA_m5C:0.99953671239352 7810 chr4 6623011 6623011 1 + G A rs140158985 6623015 + 6622995 6623035 41 CACTTTCAACAGCAGTGAGCCCTGGGCAGATGCCCCGGCCC CACTTTCAACAGCAGTAAGCCCTGGGCAGATGCCCCGGCCC < 41bp 1 0.368805863280923 1 0.744836330413818 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6623015 chr4:6623011 synonymous SNV . 0 17 hm5C_associated_SNPs_4824 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643922143 0.510327339172364 0.999536712155715 hm5C_site_7810 DeepMRMD:0.510327339172364;iRNA_m5C:0.999536712155715 7811 chr4 6623032 6623032 1 + G T rs4234768 6623015 + 6622995 6623035 41 CACTTTCAACAGCAGTGAGCCCTGGGCAGATGCCCCGGCCC CACTTTCAACAGCAGTGAGCCCTGGGCAGATGCCCCGTCCC < 41bp 1 0.310652737642081 1 0.72528487443924 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN2B2 ENSG00000013288 UTR3 Human protein_coding chr4:6623015 chr4:6623032 . . 0 38 hm5C_associated_SNPs_4825 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921095 0.54943025112152 0.99953671215781 hm5C_site_7811 DeepMRMD:0.54943025112152;iRNA_m5C:0.99953671215781 7812 chr4 6642403 6642403 1 + C T rs10023643 6642422 + 6642402 6642442 41 CCGGGACTCCATTTTGTTCGCCGTTACTCTGCGCGTAAGTC CTGGGACTCCATTTTGTTCGCCGTTACTCTGCGCGTAAGTC < 41bp 1 0.217006998880907 1 0.0885703563690186 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRFAP1 ENSG00000179010 UTR5 Human protein_coding chr4:6642422 chr4:6642403 . . 0 2 hm5C_associated_SNPs_4826 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_7812 DeepMRMD:1;iRNA_m5C:0.999536712157817 7813 chr4 6642449 6642449 1 + C T rs114420645 6642435 + 6642415 6642455 41 TTGTTCGCCGTTACTCTGCGCGTAAGTCGCTTGTCCGTGGC TTGTTCGCCGTTACTCTGCGCGTAAGTCGCTTGTTCGTGGC < 41bp 1 0.394114333877937 1 0.100601822137833 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MRFAP1 ENSG00000179010 UTR5 Human protein_coding chr4:6642435 chr4:6642449 . . 0 35 hm5C_associated_SNPs_4827 0 0 1 0 0 Ribosome 1 0.500231667186353 1 0.999536665627294 hm5C_site_7813 DeepMRMD:1;iRNA_m5C:0.999536665627294 7814 chr4 6695699 6695699 1 + G A rs187031070 6695701 + 6695681 6695721 41 ATGGGCATGATCATAGACGTCTTTTCCCGATATTCGGGCAG ATGGGCATGATCATAGACATCTTTTCCCGATATTCGGGCAG < 41bp 1 0.162907873861205 1 0.0311714708805084 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control S100P ENSG00000163993 CDS Human protein_coding chr4:6695701 chr4:6695699 nonsynonymous SNV 0.011 1 19 hm5C_associated_SNPs_4828 0 0 1 0 1 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_7814 DeepMRMD:1;iRNA_m5C:0.99953671215781 7815 chr4 6695708 6695708 1 + C T rs543945473 6695701 + 6695681 6695721 41 ATGGGCATGATCATAGACGTCTTTTCCCGATATTCGGGCAG ATGGGCATGATCATAGACGTCTTTTCCTGATATTCGGGCAG < 41bp 1 0.116052979883941 1 0.0473883450031281 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control S100P ENSG00000163993 CDS Human protein_coding chr4:6695701 chr4:6695708 stopgain 0.002 0 28 hm5C_associated_SNPs_4829 0 0 1 0 1 Ribosome 1 0.500231644156299 1 0.999536711687401 hm5C_site_7815 DeepMRMD:1;iRNA_m5C:0.999536711687401 7816 chr4 6925425 6925425 1 + C T rs370873478 6925415 + 6925395 6925435 41 CGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTGCGCGC CGACCTCATCCCCGAGCGGGCCTTCCAGAGTGCCTGCGCGC < 41bp 1 0.0197956911004591 1 0.0196303129196167 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:6925415 chr4:6925425 synonymous SNV . 0 31 hm5C_associated_SNPs_4830 0 0 1 0 0 Cytosol 1 0.50022999366797 1 0.99954001266406 hm5C_site_7816 DeepMRMD:1;iRNA_m5C:0.99954001266406 7817 chr4 6925428 6925428 1 + C T rs553894612 6925415 + 6925395 6925435 41 CGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTGCGCGC CGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCTTGCGCGC < 41bp 1 0.0240044670307139 1 0.0225494801998138 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:6925415 chr4:6925428 synonymous SNV . 0 34 hm5C_associated_SNPs_4831 0 0 1 0 0 Cytosol 1 0.500231643725127 1 0.999536712549746 hm5C_site_7817 DeepMRMD:1;iRNA_m5C:0.999536712549746 7818 chr4 7026923 7026923 1 + C T rs200547397 7026933 + 7026913 7026953 41 AGGACCTGCCCGCCGAGGAGCTGTTTGCCTCCATCGCCACG AGGACCTGCCTGCCGAGGAGCTGTTTGCCTCCATCGCCACG < 41bp 1 0.223250279186232 1 0.0250622034072876 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:7026933 chr4:7026923 synonymous SNV . 0 11 hm5C_associated_SNPs_4832 0 0 1 0 1 Cytosol 1 0.500231643904084 1 0.999536712191832 hm5C_site_7818 DeepMRMD:1;iRNA_m5C:0.999536712191832 7819 chr4 7533308 7533308 1 + C G rs150440148 7533294 + 7533274 7533314 41 CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTGACCACC < 41bp 1 0.578144165455197 1 0.97165048122406 experiment 0.843711669089606 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7533294 chr4:7533308 synonymous SNV . 0 35 hm5C_associated_SNPs_4834 0 0 0 0 2 nucleus 1 0.500231643921092 0.0566990375518801 0.999536712157815 hm5C_site_7819 DeepMRMD:0.0566990375518801;iRNA_m5C:0.999536712157815 7820 chr4 8229850 8229850 1 + C T rs141246804 8229856 + 8229836 8229876 41 CATCACCTTCATGACGCAGGCAGTGGAAGCCAGTGCTATTG CATCACCTTCATGATGCAGGCAGTGGAAGCCAGTGCTATTG < 41bp 1 0.40057099811354 1 0.45058462023735 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8229856 chr4:8229850 nonsynonymous SNV 0.014 0 15 hm5C_associated_SNPs_4835 0 0 0 0 0 cytosol 1 0.500232920977295 1 0.999534158045409 hm5C_site_7820 DeepMRMD:1;iRNA_m5C:0.999534158045409 7821 chr4 8238041 8238041 1 + C T rs144056490 8238056 + 8238036 8238076 41 GCAACCGCAAGGCGGAGCTGCGGCTGTGCAACAAGCTGGTG GCAACTGCAAGGCGGAGCTGCGGCTGTGCAACAAGCTGGTG < 41bp 1 0.382037596667522 1 0.136302500963211 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8238056 chr4:8238041 nonsynonymous SNV 0.016 1 6 hm5C_associated_SNPs_4836 0 0 1 0 1 cytosol 1 0.500231646032689 1 0.999536707934621 hm5C_site_7821 DeepMRMD:1;iRNA_m5C:0.999536707934621 7822 chr4 8238048 8238048 1 + C A rs112207455 8238056 + 8238036 8238076 41 GCAACCGCAAGGCGGAGCTGCGGCTGTGCAACAAGCTGGTG GCAACCGCAAGGAGGAGCTGCGGCTGTGCAACAAGCTGGTG < 41bp 1 0.325029955506117 1 0.127215057611465 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8238056 chr4:8238048 nonsynonymous SNV 0.003 1 13 hm5C_associated_SNPs_4837 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7822 DeepMRMD:1;iRNA_m5C:0.999536712157815 7823 chr4 8238057 8238057 1 + G A rs143995291 8238056 + 8238036 8238076 41 GCAACCGCAAGGCGGAGCTGCGGCTGTGCAACAAGCTGGTG GCAACCGCAAGGCGGAGCTGCAGCTGTGCAACAAGCTGGTG < 41bp 1 0.313265514785709 1 0.102235347032547 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8238056 chr4:8238057 nonsynonymous SNV 0.763 4 22 hm5C_associated_SNPs_4838 0 0 1 0 2 cytosol 1 0.500231643930336 1 0.999536712139328 hm5C_site_7823 DeepMRMD:1;iRNA_m5C:0.999536712139328 7824 chr4 8307961 8307961 1 + A G rs538627129 8307955 + 8307935 8307975 41 ACGAAGGACCACCGTCGGTCCTCAGCAGGGCGGCAGCCTCC ACGAAGGACCACCGTCGGTCCTCAGCGGGGCGGCAGCCTCC < 41bp 1 0.672235938224161 1 0.474825799465179 experiment 0.655528123551677 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTRA3 ENSG00000170801 UTR3 Human protein_coding chr4:8307955 chr4:8307961 . . 0 27 hm5C_associated_SNPs_4839 0 0 0 0 0 exosome 1 0.500231522018918 1 0.999536955962164 hm5C_site_7824 DeepMRMD:1;iRNA_m5C:0.999536955962164 7825 chr4 8307965 8307965 1 + C T rs555811848 8307955 + 8307935 8307975 41 ACGAAGGACCACCGTCGGTCCTCAGCAGGGCGGCAGCCTCC ACGAAGGACCACCGTCGGTCCTCAGCAGGGTGGCAGCCTCC < 41bp 1 0.616500898305206 1 0.395003944635391 experiment 0.766998203389589 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTRA3 ENSG00000170801 UTR3 Human protein_coding chr4:8307955 chr4:8307965 . . 0 31 hm5C_associated_SNPs_4840 0 0 0 0 0 exosome 1 0.500230456405973 1 0.999539087188053 hm5C_site_7825 DeepMRMD:1;iRNA_m5C:0.999539087188053 7826 chr4 8307966 8307966 1 + G A rs572014120 8307955 + 8307935 8307975 41 ACGAAGGACCACCGTCGGTCCTCAGCAGGGCGGCAGCCTCC ACGAAGGACCACCGTCGGTCCTCAGCAGGGCAGCAGCCTCC < 41bp 1 0.647811077152627 1 0.372757077217102 experiment 0.704377845694746 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTRA3 ENSG00000170801 UTR3 Human protein_coding chr4:8307955 chr4:8307966 . . 0 32 hm5C_associated_SNPs_4841 0 0 0 0 0 exosome 1 0.500231643854625 1 0.999536712290749 hm5C_site_7826 DeepMRMD:1;iRNA_m5C:0.999536712290749 7827 chr4 8478066 8478066 1 + C T rs559418787 8478068 + 8478048 8478088 41 CACAGGCCCTTCCCAGGGCGCTGTCCGACGCCTGCCCCACC CACAGGCCCTTCCCAGGGTGCTGTCCGACGCCTGCCCCACC < 41bp 1 0.138796477796951 1 0.2546346783638 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRMT44 ENSG00000155275 UTR3 Human protein_coding chr4:8478068 chr4:8478066 . . 0 19 hm5C_associated_SNPs_4842 0 0 0 0 0 Cytosol 1 0.500231453418196 1 0.999537093163607 hm5C_site_7827 DeepMRMD:1;iRNA_m5C:0.999537093163607 7828 chr4 8478171 8478171 1 + C T rs148044730 8478168 + 8478148 8478188 41 TTTCTCACCACACTGGAGAGCAGCTGCTCTGGAGCAGGGAT TTTCTCACCACACTGGAGAGCAGTTGCTCTGGAGCAGGGAT < 41bp 1 0.128214640036032 1 0.374261647462845 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRMT44 ENSG00000155275 UTR3 Human protein_coding chr4:8478168 chr4:8478171 . . 0 24 hm5C_associated_SNPs_4843 0 0 1 0 0 Cytosol 1 0.500231643921095 1 0.99953671215781 hm5C_site_7828 DeepMRMD:1;iRNA_m5C:0.99953671215781 7829 chr4 15005436 15005436 1 + G C rs572958953 15005417 + 15005397 15005437 41 GAGGCGGCTCCGCGTCGCCGCCGCCGCTGCCCGGCTTCGGC GAGGCGGCTCCGCGTCGCCGCCGCCGCTGCCCGGCTTCGCC < 41bp 1 0.441506012432679 1 0.395361006259918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15005417 chr4:15005436 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_4845 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_7829 DeepMRMD:1;iRNA_m5C:0.999536712157815 7830 chr4 15005436 15005436 1 + G C rs572958953 15005420 + 15005400 15005440 41 GCGGCTCCGCGTCGCCGCCGCCGCTGCCCGGCTTCGGCACC GCGGCTCCGCGTCGCCGCCGCCGCTGCCCGGCTTCGCCACC < 41bp 1 0.549434036769975 1 0.43159431219101 experiment 0.90113192646005 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15005420 chr4:15005436 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_4846 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_7830 DeepMRMD:1;iRNA_m5C:0.999536712157815 7831 chr4 15005599 15005599 1 + G A rs373559194 15005612 + 15005592 15005632 41 GCGGCTCGCTCAGCGCCATGCCGCCGCCCAGCCCCGACTCA GCGGCTCACTCAGCGCCATGCCGCCGCCCAGCCCCGACTCA < 41bp 1 0.389280534496337 1 0.685752689838409 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15005612 chr4:15005599 synonymous SNV . 0 8 hm5C_associated_SNPs_4851 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921114 0.628494620323182 0.999536712157773 hm5C_site_7831 DeepMRMD:0.628494620323182;iRNA_m5C:0.999536712157773 7832 chr4 15005599 15005599 1 + G A rs373559194 15005615 + 15005595 15005635 41 GCTCGCTCAGCGCCATGCCGCCGCCCAGCCCCGACTCAGAG GCTCACTCAGCGCCATGCCGCCGCCCAGCCCCGACTCAGAG < 41bp 1 0.241901900121912 1 0.0789648592472076 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15005615 chr4:15005599 synonymous SNV . 0 5 hm5C_associated_SNPs_4852 0 0 0 0 0 Endoplasmic reticulum 1 0.50023307016593 1 0.99953385966814 hm5C_site_7832 DeepMRMD:1;iRNA_m5C:0.99953385966814 7833 chr4 15005599 15005599 1 + G A rs373559194 15005616 + 15005596 15005636 41 CTCGCTCAGCGCCATGCCGCCGCCCAGCCCCGACTCAGAGA CTCACTCAGCGCCATGCCGCCGCCCAGCCCCGACTCAGAGA < 41bp 1 0.402828176881104 1 0.41777116060257 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15005616 chr4:15005599 synonymous SNV . 0 4 hm5C_associated_SNPs_4853 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644161428 1 0.999536711677145 hm5C_site_7833 DeepMRMD:1;iRNA_m5C:0.999536711677145 7834 chr4 15005599 15005599 1 + G A rs373559194 15005618 + 15005598 15005638 41 CGCTCAGCGCCATGCCGCCGCCCAGCCCCGACTCAGAGAAC CACTCAGCGCCATGCCGCCGCCCAGCCCCGACTCAGAGAAC < 41bp 1 0.22967148598254 1 0.205078959465027 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15005618 chr4:15005599 synonymous SNV . 0 2 hm5C_associated_SNPs_4854 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643926434 1 0.999536712147132 hm5C_site_7834 DeepMRMD:1;iRNA_m5C:0.999536712147132 7835 chr4 15005599 15005599 1 + G A rs373559194 15005619 + 15005599 15005639 41 GCTCAGCGCCATGCCGCCGCCCAGCCCCGACTCAGAGAACG ACTCAGCGCCATGCCGCCGCCCAGCCCCGACTCAGAGAACG < 41bp 1 0.312463679487359 1 0.224529415369034 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15005619 chr4:15005599 synonymous SNV . 0 1 hm5C_associated_SNPs_4855 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157813 hm5C_site_7835 DeepMRMD:1;iRNA_m5C:0.999536712157813 7836 chr4 15005604 15005604 1 + G A rs112476821 15005612 + 15005592 15005632 41 GCGGCTCGCTCAGCGCCATGCCGCCGCCCAGCCCCGACTCA GCGGCTCGCTCAACGCCATGCCGCCGCCCAGCCCCGACTCA < 41bp 1 0.345176751435465 1 0.681911587715149 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15005612 chr4:15005604 nonsynonymous SNV 0.984 0 13 hm5C_associated_SNPs_4856 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.636176824569702 0.999536712157816 hm5C_site_7836 DeepMRMD:0.636176824569702;iRNA_m5C:0.999536712157816 7837 chr4 15005604 15005604 1 + G A rs112476821 15005615 + 15005595 15005635 41 GCTCGCTCAGCGCCATGCCGCCGCCCAGCCCCGACTCAGAG GCTCGCTCAACGCCATGCCGCCGCCCAGCCCCGACTCAGAG < 41bp 1 0.209559454376239 1 0.0891514718532562 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15005615 chr4:15005604 nonsynonymous SNV 0.984 0 10 hm5C_associated_SNPs_4858 0 0 0 0 0 Endoplasmic reticulum 1 0.500231633234425 1 0.99953673353115 hm5C_site_7837 DeepMRMD:1;iRNA_m5C:0.99953673353115 7838 chr4 15005604 15005604 1 + G A rs112476821 15005616 + 15005596 15005636 41 CTCGCTCAGCGCCATGCCGCCGCCCAGCCCCGACTCAGAGA CTCGCTCAACGCCATGCCGCCGCCCAGCCCCGACTCAGAGA < 41bp 1 0.363466748282413 1 0.286630541086197 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15005616 chr4:15005604 nonsynonymous SNV 0.984 0 9 hm5C_associated_SNPs_4859 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643566908 1 0.999536712866184 hm5C_site_7838 DeepMRMD:1;iRNA_m5C:0.999536712866184 7839 chr4 15005604 15005604 1 + G A rs112476821 15005618 + 15005598 15005638 41 CGCTCAGCGCCATGCCGCCGCCCAGCCCCGACTCAGAGAAC CGCTCAACGCCATGCCGCCGCCCAGCCCCGACTCAGAGAAC < 41bp 1 0.268464404231009 1 0.150988548994064 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15005618 chr4:15005604 nonsynonymous SNV 0.984 0 7 hm5C_associated_SNPs_4860 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643713061 1 0.999536712573879 hm5C_site_7839 DeepMRMD:1;iRNA_m5C:0.999536712573879 7840 chr4 15005604 15005604 1 + G A rs112476821 15005619 + 15005599 15005639 41 GCTCAGCGCCATGCCGCCGCCCAGCCCCGACTCAGAGAACG GCTCAACGCCATGCCGCCGCCCAGCCCCGACTCAGAGAACG < 41bp 1 0.32129502314942 1 0.16676589846611 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15005619 chr4:15005604 nonsynonymous SNV 0.984 0 6 hm5C_associated_SNPs_4861 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921097 1 0.999536712157806 hm5C_site_7840 DeepMRMD:1;iRNA_m5C:0.999536712157806 7841 chr4 15005604 15005604 1 + G A rs112476821 15005620 + 15005600 15005640 41 CTCAGCGCCATGCCGCCGCCCAGCCCCGACTCAGAGAACGG CTCAACGCCATGCCGCCGCCCAGCCCCGACTCAGAGAACGG < 41bp 1 0.324054315244987 1 0.22578901052475 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15005620 chr4:15005604 nonsynonymous SNV 0.984 0 5 hm5C_associated_SNPs_4862 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643947341 1 0.999536712105318 hm5C_site_7841 DeepMRMD:1;iRNA_m5C:0.999536712105318 7842 chr4 20702139 20702139 1 + C A rs533537868 20702150 + 20702130 20702170 41 ACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCT ACCGAGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCT < 41bp 1 0.175383928481845 1 0.0657207071781158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702150 chr4:20702139 . . 0 10 hm5C_associated_SNPs_4863 0 0 1 0 2 Ribosome 1 0.500231643921119 1 0.999536712157763 hm5C_site_7842 DeepMRMD:1;iRNA_m5C:0.999536712157763 7843 chr4 20702139 20702139 1 + C A rs533537868 20702151 + 20702131 20702171 41 CCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTG CCGAGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTG < 41bp 1 0.163519613896218 1 0.0559248030185699 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702151 chr4:20702139 . . 0 9 hm5C_associated_SNPs_4864 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7843 DeepMRMD:1;iRNA_m5C:0.999536712157815 7844 chr4 20702139 20702139 1 + C A rs533537868 20702152 + 20702132 20702172 41 CGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGG CGAGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGG < 41bp 1 0.19890841681741 1 0.201973021030426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702152 chr4:20702139 . . 0 8 hm5C_associated_SNPs_4865 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7844 DeepMRMD:1;iRNA_m5C:0.999536712157815 7845 chr4 20702139 20702139 1 + C A rs533537868 20702153 + 20702133 20702173 41 GAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGT GAGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGT < 41bp 1 0.521346255491339 1 0.3326455950737 experiment 0.957307489017323 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702153 chr4:20702139 . . 0 7 hm5C_associated_SNPs_4866 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7845 DeepMRMD:1;iRNA_m5C:0.999536712157815 7846 chr4 20702139 20702139 1 + C A rs533537868 20702154 + 20702134 20702174 41 AGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGTG AGTGCAGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGTG < 41bp 1 0.564333203168466 1 0.37446391582489 experiment 0.871333593663068 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702154 chr4:20702139 . . 0 6 hm5C_associated_SNPs_4867 0 0 1 0 2 Ribosome 1 0.500231643921104 1 0.999536712157792 hm5C_site_7846 DeepMRMD:1;iRNA_m5C:0.999536712157792 7847 chr4 20702148 20702148 1 + G A rs558872339 20702150 + 20702130 20702170 41 ACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCT ACCGAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCT < 41bp 1 0.223595349833778 1 0.0551818013191223 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702150 chr4:20702148 . . 0 19 hm5C_associated_SNPs_4868 0 0 1 0 2 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_7847 DeepMRMD:1;iRNA_m5C:0.999536712157813 7848 chr4 20702148 20702148 1 + G A rs558872339 20702151 + 20702131 20702171 41 CCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTG CCGAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCTG < 41bp 1 0.207310567981003 1 0.0338912904262543 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702151 chr4:20702148 . . 0 18 hm5C_associated_SNPs_4869 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7848 DeepMRMD:1;iRNA_m5C:0.999536712157815 7849 chr4 20702148 20702148 1 + G A rs558872339 20702152 + 20702132 20702172 41 CGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGG CGAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCTGG < 41bp 1 0.207965134303786 1 0.092889815568924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702152 chr4:20702148 . . 0 17 hm5C_associated_SNPs_4870 0 0 1 0 2 Ribosome 1 0.500231643920429 1 0.999536712159143 hm5C_site_7849 DeepMRMD:1;iRNA_m5C:0.999536712159143 7850 chr4 20702148 20702148 1 + G A rs558872339 20702153 + 20702133 20702173 41 GAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGT GAGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCTGGT < 41bp 1 0.446038842007826 1 0.154254972934723 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702153 chr4:20702148 . . 0 16 hm5C_associated_SNPs_4871 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7850 DeepMRMD:1;iRNA_m5C:0.999536712157815 7851 chr4 20702148 20702148 1 + G A rs558872339 20702154 + 20702134 20702174 41 AGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGTG AGTGCCGGTCATAAACCCCCCCCGGTGGGGGGCAGCTGGTG < 41bp 1 0.547114837931944 1 0.253957271575928 experiment 0.905770324136111 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702154 chr4:20702148 . . 0 15 hm5C_associated_SNPs_4872 0 0 1 0 2 Ribosome 1 0.500231644582181 1 0.999536710835638 hm5C_site_7851 DeepMRMD:1;iRNA_m5C:0.999536710835638 7852 chr4 20702164 20702164 1 + G T rs76783569 20702150 + 20702130 20702170 41 ACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCT ACCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCT < 41bp 1 0.194410385289672 1 0.14340204000473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702150 chr4:20702164 . . 0 35 hm5C_associated_SNPs_4873 0 0 1 0 2 Ribosome 1 0.500231643921059 1 0.999536712157881 hm5C_site_7852 DeepMRMD:1;iRNA_m5C:0.999536712157881 7853 chr4 20702164 20702164 1 + G T rs76783569 20702151 + 20702131 20702171 41 CCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTG CCGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCTG < 41bp 1 0.172643919810133 1 0.0760397613048553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702151 chr4:20702164 . . 0 34 hm5C_associated_SNPs_4874 0 0 1 0 2 Ribosome 1 0.500231641024485 1 0.999536717951031 hm5C_site_7853 DeepMRMD:1;iRNA_m5C:0.999536717951031 7854 chr4 20702164 20702164 1 + G T rs76783569 20702152 + 20702132 20702172 41 CGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGG CGAGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCTGG < 41bp 1 0.191578060505604 1 0.170005738735199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702152 chr4:20702164 . . 0 33 hm5C_associated_SNPs_4875 0 0 1 0 2 Ribosome 1 0.500231643919458 1 0.999536712161083 hm5C_site_7854 DeepMRMD:1;iRNA_m5C:0.999536712161083 7855 chr4 20702164 20702164 1 + G T rs76783569 20702153 + 20702133 20702173 41 GAGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGT GAGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCTGGT < 41bp 1 0.493240522207438 1 0.361355006694794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702153 chr4:20702164 . . 0 32 hm5C_associated_SNPs_4876 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_7855 DeepMRMD:1;iRNA_m5C:0.999536712157816 7856 chr4 20702164 20702164 1 + G T rs76783569 20702154 + 20702134 20702174 41 AGTGCCGGTCATAAGCCCCCCCCGGTGGGGGGCAGCTGGTG AGTGCCGGTCATAAGCCCCCCCCGGTGGGGTGCAGCTGGTG < 41bp 1 0.50890798136697 1 0.323438465595245 experiment 0.982184037266059 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PACRGL ENSG00000163138 UTR5 Human protein_coding chr4:20702154 chr4:20702164 . . 0 31 hm5C_associated_SNPs_4877 0 0 1 0 2 Ribosome 1 0.50023161173229 1 0.999536776535421 hm5C_site_7856 DeepMRMD:1;iRNA_m5C:0.999536776535421 7857 chr4 25931325 25931325 1 + G A rs554 25931324 + 25931304 25931344 41 CCTCATGCTGAAGATTGCACCGTGTTGGAAAATAAATATGA CCTCATGCTGAAGATTGCACCATGTTGGAAAATAAATATGA < 41bp 1 0.634304062489879 1 0.393335163593292 experiment 0.731391875020242 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMIM20 ENSG00000250317 UTR3 Human protein_coding chr4:25931324 chr4:25931325 . . 0 22 hm5C_associated_SNPs_4878 0 0 1 0 0 Ribosome 1 0.500231703220541 1 0.999536593558918 hm5C_site_7857 DeepMRMD:1;iRNA_m5C:0.999536593558918 7858 chr4 38139125 38139125 1 + A G rs12644032 38139124 + 38139104 38139144 41 CCAACTTGCAATTCAGGGGGCATGTCCCAGTGTTTTTTTTG CCAACTTGCAATTCAGGGGGCGTGTCCCAGTGTTTTTTTTG < 41bp 1 0.0737097113028187 1 0.0894413590431213 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBC1D1 ENSG00000065882 UTR3 Human protein_coding chr4:38139124 chr4:38139125 . . 0 22 hm5C_associated_SNPs_4879 0 0 1 2 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_7858 DeepMRMD:1;iRNA_m5C:0.999536712157815 7859 chr4 38870153 38870153 1 + C T rs139208981 38870133 + 38870113 38870153 41 CGCAGATCCCCAGGCCCCCTCCACCCAGTCGGCTAGCCCTC CGCAGATCCCCAGGCCCCCTCCACCCAGTCGGCTAGCCCTT < 41bp 1 0.279806759754385 1 0.22525429725647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FAM114A1 ENSG00000197712 UTR5 Human protein_coding chr4:38870133 chr4:38870153 . . 0 41 hm5C_associated_SNPs_4880 0 0 1 0 1 Cytosol 1 0.500231643924607 1 0.999536712150786 hm5C_site_7859 DeepMRMD:1;iRNA_m5C:0.999536712150786 7860 chr4 38937405 38937405 1 + T C rs200908766 38937401 + 38937381 38937421 41 GAAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTAC GAAGTTTACGAATTCTTTAACCACCGTTGGGGTAAGATTAC < 41bp 1 0.0700977826970791 1 0.169721633195877 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937401 chr4:38937405 synonymous SNV . 0 25 hm5C_associated_SNPs_4881 0 0 1 0 2 Cytosol 1 0.500231643921571 1 0.999536712156858 hm5C_site_7860 DeepMRMD:1;iRNA_m5C:0.999536712156858 7861 chr4 38937405 38937405 1 + T C rs200908766 38937402 + 38937382 38937422 41 AAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTACA AAGTTTACGAATTCTTTAACCACCGTTGGGGTAAGATTACA < 41bp 1 0.434592959130178 1 0.219931811094284 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937402 chr4:38937405 synonymous SNV . 0 24 hm5C_associated_SNPs_4882 0 0 1 0 2 Cytosol 1 0.500231643924045 1 0.999536712151911 hm5C_site_7861 DeepMRMD:1;iRNA_m5C:0.999536712151911 7862 chr4 38945985 38945985 1 + C T rs542786904 38945979 + 38945959 38945999 41 GGGATTACAGGCTTGAGCCACCGCGCCCGGCCGGTCATTCA GGGATTACAGGCTTGAGCCACCGCGCTCGGCCGGTCATTCA < 41bp 1 0.560496675501794 1 0.314551472663879 experiment 0.879006648996412 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 UTR3 Human protein_coding chr4:38945979 chr4:38945985 . . 0 27 hm5C_associated_SNPs_4884 0 0 1 0 0 Cytosol 1 0.500231785922505 1 0.999536428154991 hm5C_site_7862 DeepMRMD:1;iRNA_m5C:0.999536428154991 7863 chr4 38945985 38945985 1 + C T rs542786904 38945980 + 38945960 38946000 41 GGATTACAGGCTTGAGCCACCGCGCCCGGCCGGTCATTCAT GGATTACAGGCTTGAGCCACCGCGCTCGGCCGGTCATTCAT < 41bp 1 0.694016686474967 1 0.218393921852112 experiment 0.611966627050065 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 UTR3 Human protein_coding chr4:38945980 chr4:38945985 . . 0 26 hm5C_associated_SNPs_4885 0 0 1 0 0 Cytosol 1 0.500231643921307 1 0.999536712157386 hm5C_site_7863 DeepMRMD:1;iRNA_m5C:0.999536712157386 7864 chr4 38945986 38945986 1 + C T rs182843721 38945979 + 38945959 38945999 41 GGGATTACAGGCTTGAGCCACCGCGCCCGGCCGGTCATTCA GGGATTACAGGCTTGAGCCACCGCGCCTGGCCGGTCATTCA < 41bp 1 0.470456379625586 1 0.542933285236359 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 UTR3 Human protein_coding chr4:38945979 chr4:38945986 . . 0 28 hm5C_associated_SNPs_4886 0 0 1 0 0 Cytosol 1 0.500231643982566 0.914133429527282 0.999536712034868 hm5C_site_7864 DeepMRMD:0.914133429527282;iRNA_m5C:0.999536712034868 7865 chr4 38945986 38945986 1 + C T rs182843721 38945980 + 38945960 38946000 41 GGATTACAGGCTTGAGCCACCGCGCCCGGCCGGTCATTCAT GGATTACAGGCTTGAGCCACCGCGCCTGGCCGGTCATTCAT < 41bp 1 0.694214135390245 1 0.267263174057007 experiment 0.611571729219511 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 UTR3 Human protein_coding chr4:38945980 chr4:38945986 . . 0 27 hm5C_associated_SNPs_4887 0 0 1 0 0 Cytosol 1 0.500231643911241 1 0.999536712177519 hm5C_site_7865 DeepMRMD:1;iRNA_m5C:0.999536712177519 7866 chr4 38945987 38945987 1 + G A rs375886768 38945979 + 38945959 38945999 41 GGGATTACAGGCTTGAGCCACCGCGCCCGGCCGGTCATTCA GGGATTACAGGCTTGAGCCACCGCGCCCAGCCGGTCATTCA < 41bp 1 0.47088506899926 1 0.292517155408859 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 UTR3 Human protein_coding chr4:38945979 chr4:38945987 . . 0 29 hm5C_associated_SNPs_4888 0 0 1 0 0 Cytosol 1 0.500231643982079 1 0.999536712035843 hm5C_site_7866 DeepMRMD:1;iRNA_m5C:0.999536712035843 7867 chr4 38945987 38945987 1 + G A rs375886768 38945980 + 38945960 38946000 41 GGATTACAGGCTTGAGCCACCGCGCCCGGCCGGTCATTCAT GGATTACAGGCTTGAGCCACCGCGCCCAGCCGGTCATTCAT < 41bp 1 0.622988007786643 1 0.312473297119141 experiment 0.754023984426715 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 UTR3 Human protein_coding chr4:38945980 chr4:38945987 . . 0 28 hm5C_associated_SNPs_4889 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7867 DeepMRMD:1;iRNA_m5C:0.999536712157815 7868 chr4 39482354 39482354 1 + C T rs6843515 39482364 + 39482344 39482384 41 TTGAGAAAACCGTCTGGTCACAGCCTGGTCGTCAGATTCTA TTGAGAAAACTGTCTGGTCACAGCCTGGTCGTCAGATTCTA < 41bp 1 0.371155631229526 1 0.0481028258800507 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482364 chr4:39482354 . . 0 11 hm5C_associated_SNPs_4891 0 0 0 1 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_7868 DeepMRMD:1;iRNA_m5C:0.999536712157815 7869 chr4 39482384 39482384 1 + A C rs10009841 39482364 + 39482344 39482384 41 TTGAGAAAACCGTCTGGTCACAGCCTGGTCGTCAGATTCTA TTGAGAAAACCGTCTGGTCACAGCCTGGTCGTCAGATTCTC < 41bp 1 0.391892015004644 1 0.0511719286441803 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482364 chr4:39482384 . . 0 41 hm5C_associated_SNPs_4892 0 0 0 0 0 unknown 1 0.500231643656325 1 0.99953671268735 hm5C_site_7869 DeepMRMD:1;iRNA_m5C:0.99953671268735 7870 chr4 40156876 40156876 1 + G A rs140319093 40156894 + 40156874 40156914 41 TGGTGGCGTGTGCCTGTAATCCCAGCTACTTGGGAGGCTGA TGATGGCGTGTGCCTGTAATCCCAGCTACTTGGGAGGCTGA < 41bp 1 0.417534249853103 1 0.33338874578476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control N4BP2 ENSG00000078177 UTR3 Human protein_coding chr4:40156894 chr4:40156876 . . 0 3 hm5C_associated_SNPs_4893 0 0 0 0 0 Ribosome 1 0.500231643952603 1 0.999536712094795 hm5C_site_7870 DeepMRMD:1;iRNA_m5C:0.999536712094795 7871 chr4 40156881 40156881 1 + G A rs13130198 40156894 + 40156874 40156914 41 TGGTGGCGTGTGCCTGTAATCCCAGCTACTTGGGAGGCTGA TGGTGGCATGTGCCTGTAATCCCAGCTACTTGGGAGGCTGA < 41bp 1 0.410970921305033 1 0.360130190849304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control N4BP2 ENSG00000078177 UTR3 Human protein_coding chr4:40156894 chr4:40156881 . . 0 8 hm5C_associated_SNPs_4894 0 0 0 0 0 Ribosome 1 0.500231643915569 1 0.999536712168861 hm5C_site_7871 DeepMRMD:1;iRNA_m5C:0.999536712168861 7872 chr4 40156912 40156912 1 + T C rs138208702 40156894 + 40156874 40156914 41 TGGTGGCGTGTGCCTGTAATCCCAGCTACTTGGGAGGCTGA TGGTGGCGTGTGCCTGTAATCCCAGCTACTTGGGAGGCCGA < 41bp 1 0.455398343261965 1 0.445530712604523 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control N4BP2 ENSG00000078177 UTR3 Human protein_coding chr4:40156894 chr4:40156912 . . 0 39 hm5C_associated_SNPs_4895 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_7872 DeepMRMD:1;iRNA_m5C:0.999536712157815 7873 chr4 41652414 41652414 1 + A G rs75351013 41652424 + 41652404 41652444 41 TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGT TTATAGGTAGGCGGGAAAGTCAGTGTGAATGGAGAGACGGT < 41bp 1 0.366368490893377 1 0.487499952316284 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41652424 chr4:41652414 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_4896 0 0 1 0 1 Nucleus 1 0.500231644551854 1 0.999536710896292 hm5C_site_7873 DeepMRMD:1;iRNA_m5C:0.999536710896292 7874 chr4 41652415 41652415 1 + C T rs141393106 41652424 + 41652404 41652444 41 TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGT TTATAGGTAGATGGGAAAGTCAGTGTGAATGGAGAGACGGT < 41bp 1 0.288237151591483 1 0.395561695098877 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41652424 chr4:41652415 synonymous SNV . 0 12 hm5C_associated_SNPs_4897 0 0 1 0 1 Nucleus 1 0.500231643921075 1 0.99953671215785 hm5C_site_7874 DeepMRMD:1;iRNA_m5C:0.99953671215785 7875 chr4 41652442 41652442 1 + G A rs16853408 41652424 + 41652404 41652444 41 TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGT TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACAGT < 41bp 1 0.308046640528971 1 0.355908036231995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41652424 chr4:41652442 synonymous SNV . 0 39 hm5C_associated_SNPs_4898 0 0 1 0 1 Nucleus 1 0.500231645190581 1 0.999536709618838 hm5C_site_7875 DeepMRMD:1;iRNA_m5C:0.999536709618838 7876 chr4 41956251 41956251 1 + G A rs6852659 41956252 + 41956232 41956272 41 AGCTACAAATATAGTATAAGCATTATTAGCAGCTGGTACTT AGCTACAAATATAGTATAAACATTATTAGCAGCTGGTACTT < 41bp 1 0.448808931033731 1 0.0460907816886902 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM33 ENSG00000109133 UTR3 Human protein_coding chr4:41956252 chr4:41956251 . . 0 20 hm5C_associated_SNPs_4899 0 0 1 1 0 Ribosome 1 0.500231648024739 1 0.999536703950522 hm5C_site_7876 DeepMRMD:1;iRNA_m5C:0.999536703950522 7877 chr4 41956255 41956255 1 + T C rs6835667 41956252 + 41956232 41956272 41 AGCTACAAATATAGTATAAGCATTATTAGCAGCTGGTACTT AGCTACAAATATAGTATAAGCATCATTAGCAGCTGGTACTT < 41bp 1 0.633569975188278 1 0.0768101513385773 experiment 0.732860049623443 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM33 ENSG00000109133 UTR3 Human protein_coding chr4:41956252 chr4:41956255 . . 0 24 hm5C_associated_SNPs_4900 0 0 1 1 0 Ribosome 1 0.500231647286673 1 0.999536705426654 hm5C_site_7877 DeepMRMD:1;iRNA_m5C:0.999536705426654 7878 chr4 41958150 41958150 1 + A G rs185882434 41958153 + 41958133 41958173 41 TACAGGTGCACGCCACCACGCCTGTAGTCCCAGCTGTATTG TACAGGTGCACGCCACCGCGCCTGTAGTCCCAGCTGTATTG < 41bp 1 0.165711867844763 1 0.0258899331092834 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TMEM33 ENSG00000109133 UTR3 Human protein_coding chr4:41958153 chr4:41958150 . . 0 18 hm5C_associated_SNPs_4902 0 0 1 0 0 Ribosome 1 0.50023164394911 1 0.99953671210178 hm5C_site_7878 DeepMRMD:1;iRNA_m5C:0.99953671210178 7879 chr4 41958150 41958150 1 + A G rs185882434 41958154 + 41958134 41958174 41 ACAGGTGCACGCCACCACGCCTGTAGTCCCAGCTGTATTGT ACAGGTGCACGCCACCGCGCCTGTAGTCCCAGCTGTATTGT < 41bp 1 0.586195166473339 1 0.157535552978516 experiment 0.827609667053322 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TMEM33 ENSG00000109133 UTR3 Human protein_coding chr4:41958154 chr4:41958150 . . 0 17 hm5C_associated_SNPs_4903 0 0 1 0 0 Ribosome 1 0.500231644349487 1 0.999536711301027 hm5C_site_7879 DeepMRMD:1;iRNA_m5C:0.999536711301027 7880 chr4 41958150 41958150 1 + A G rs185882434 41958161 + 41958141 41958181 41 CACGCCACCACGCCTGTAGTCCCAGCTGTATTGTAAAAATA CACGCCACCGCGCCTGTAGTCCCAGCTGTATTGTAAAAATA < 41bp 1 0.312860136169942 1 0.22474530339241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TMEM33 ENSG00000109133 UTR3 Human protein_coding chr4:41958161 chr4:41958150 . . 0 10 hm5C_associated_SNPs_4904 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7880 DeepMRMD:1;iRNA_m5C:0.999536712157815 7881 chr4 41958150 41958150 1 + A G rs185882434 41958162 + 41958142 41958182 41 ACGCCACCACGCCTGTAGTCCCAGCTGTATTGTAAAAATAC ACGCCACCGCGCCTGTAGTCCCAGCTGTATTGTAAAAATAC < 41bp 1 0.21727871098607 1 0.13836258649826 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TMEM33 ENSG00000109133 UTR3 Human protein_coding chr4:41958162 chr4:41958150 . . 0 9 hm5C_associated_SNPs_4905 0 0 1 0 0 Ribosome 1 0.500231684072106 1 0.999536631855787 hm5C_site_7881 DeepMRMD:1;iRNA_m5C:0.999536631855787 7882 chr4 41958150 41958150 1 + A G rs185882434 41958163 + 41958143 41958183 41 CGCCACCACGCCTGTAGTCCCAGCTGTATTGTAAAAATACA CGCCACCGCGCCTGTAGTCCCAGCTGTATTGTAAAAATACA < 41bp 1 0.592001861955086 1 0.418429881334305 experiment 0.815996276089829 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TMEM33 ENSG00000109133 UTR3 Human protein_coding chr4:41958163 chr4:41958150 . . 0 8 hm5C_associated_SNPs_4906 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7882 DeepMRMD:1;iRNA_m5C:0.999536712157815 7883 chr4 41960828 41960828 1 + C T rs184620372 41960846 + 41960826 41960866 41 AGCGATTCTCATGCCTCAGCCTCCCTAGTAGCTGAGACTAC AGTGATTCTCATGCCTCAGCCTCCCTAGTAGCTGAGACTAC < 41bp 1 0.463120045189858 1 0.792600333690643 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM33 ENSG00000109133 UTR3 Human protein_coding chr4:41960846 chr4:41960828 . . 0 3 hm5C_associated_SNPs_4907 0 0 1 0 0 Ribosome 1 0.500231643922196 0.414799332618714 0.999536712155609 hm5C_site_7883 DeepMRMD:0.414799332618714;iRNA_m5C:0.999536712155609 7884 chr4 42020142 42020142 1 + A G rs2581423 42020141 + 42020121 42020161 41 TTTACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACT TTTACAGCAGAAGGTATAGGCGCAGAACTCAAAGCTCCACT < 41bp 1 0.58267571399461 1 0.182757049798965 experiment 0.83464857201078 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020141 chr4:42020142 nonsynonymous SNV 0.593 0 22 hm5C_associated_SNPs_4908 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_7884 DeepMRMD:1;iRNA_m5C:0.999536712157815 7885 chr4 44680721 44680721 1 + C A rs371867418 44680704 + 44680684 44680724 41 CGCGCCACGAGCCACTGGGGCCGCGCTTCTGGTGGCCCCGG CGCGCCACGAGCCACTGGGGCCGCGCTTCTGGTGGCCACGG < 41bp 1 0.672316444304908 1 0.169914990663528 experiment 0.655367111390183 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680704 chr4:44680721 nonsynonymous SNV 0.002 0 38 hm5C_associated_SNPs_4910 0 0 0 0 1 Ribosome 1 0.500231643922526 1 0.999536712154947 hm5C_site_7885 DeepMRMD:1;iRNA_m5C:0.999536712154947 7886 chr4 44701446 44701446 1 + A G rs6811584 44701441 + 44701421 44701461 41 GAACTCCTGACCTCGTGATCCACCCACCGTGGCCTCCCAAA GAACTCCTGACCTCGTGATCCACCCGCCGTGGCCTCCCAAA < 41bp 1 0.692745916351935 1 0.0847924947738647 experiment 0.61450816729613 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 UTR3 Human protein_coding chr4:44701441 chr4:44701446 . . 0 26 hm5C_associated_SNPs_4912 0 0 1 0 0 Ribosome 1 0.500231317946931 1 0.999537364106138 hm5C_site_7886 DeepMRMD:1;iRNA_m5C:0.999537364106138 7887 chr4 44701446 44701446 1 + A G rs6811584 44701443 + 44701423 44701463 41 ACTCCTGACCTCGTGATCCACCCACCGTGGCCTCCCAAAGT ACTCCTGACCTCGTGATCCACCCGCCGTGGCCTCCCAAAGT < 41bp 1 0.537559971866314 1 0.179799288511276 experiment 0.924880056267371 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 UTR3 Human protein_coding chr4:44701443 chr4:44701446 . . 0 24 hm5C_associated_SNPs_4913 0 0 1 0 0 Ribosome 1 0.500231489506187 1 0.999537020987626 hm5C_site_7887 DeepMRMD:1;iRNA_m5C:0.999537020987626 7888 chr4 44701446 44701446 1 + A G rs6811584 44701444 + 44701424 44701464 41 CTCCTGACCTCGTGATCCACCCACCGTGGCCTCCCAAAGTG CTCCTGACCTCGTGATCCACCCGCCGTGGCCTCCCAAAGTG < 41bp 1 0.568451324752721 1 0.516573786735535 experiment 0.863097350494558 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 UTR3 Human protein_coding chr4:44701444 chr4:44701446 . . 0 23 hm5C_associated_SNPs_4914 0 0 1 0 0 Ribosome 1 0.500231643921729 0.96685242652893 0.999536712156541 hm5C_site_7888 DeepMRMD:0.96685242652893;iRNA_m5C:0.999536712156541 7889 chr4 48384676 48384676 1 + A G rs375732965 48384660 + 48384640 48384680 41 CAATTCTACAAGACGGGGTACTTTTAGTGATCAGGAACTTG CAATTCTACAAGACGGGGTACTTTTAGTGATCAGGAGCTTG < 41bp 1 0.0262366043777875 1 0.0228224396705627 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48384660 chr4:48384676 synonymous SNV . 0 37 hm5C_associated_SNPs_4915 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7889 DeepMRMD:1;iRNA_m5C:0.999536712157815 7890 chr4 53578872 53578872 1 + G A rs535996615 53578864 + 53578844 53578884 41 GGTAGAGCAGCCCTCGGCGGCCCGGGGGGCGGGCGGCGGTG GGTAGAGCAGCCCTCGGCGGCCCGGGGGACGGGCGGCGGTG < 41bp 1 0.354987720734652 1 0.560257077217102 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIR4449 ENSG00000264585 ncRNA_exonic Human miRNA chr4:53578864 chr4:53578872 . . 0 29 hm5C_associated_SNPs_4916 0 0 1 0 0 unknown 1 0.500231643921093 0.879485845565796 0.999536712157815 hm5C_site_7890 DeepMRMD:0.879485845565796;iRNA_m5C:0.999536712157815 7891 chr4 53578872 53578872 1 + G A rs535996615 53578865 + 53578845 53578885 41 GTAGAGCAGCCCTCGGCGGCCCGGGGGGCGGGCGGCGGTGC GTAGAGCAGCCCTCGGCGGCCCGGGGGACGGGCGGCGGTGC < 41bp 1 0.546670137881179 1 0.941003799438477 experiment 0.906659724237642 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIR4449 ENSG00000264585 ncRNA_exonic Human miRNA chr4:53578865 chr4:53578872 . . 0 28 hm5C_associated_SNPs_4917 0 0 1 0 0 unknown 1 0.500231643983956 0.117992401123046 0.999536712032088 hm5C_site_7891 DeepMRMD:0.117992401123046;iRNA_m5C:0.999536712032088 7892 chr4 53578872 53578872 1 + G A rs535996615 53578866 + 53578846 53578886 41 TAGAGCAGCCCTCGGCGGCCCGGGGGGCGGGCGGCGGTGCC TAGAGCAGCCCTCGGCGGCCCGGGGGACGGGCGGCGGTGCC < 41bp 1 0.687421151318377 1 0.84432315826416 experiment 0.625157697363245 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIR4449 ENSG00000264585 ncRNA_exonic Human miRNA chr4:53578866 chr4:53578872 . . 0 27 hm5C_associated_SNPs_4918 0 0 1 0 0 unknown 1 0.500231643928473 0.31135368347168 0.999536712143054 hm5C_site_7892 DeepMRMD:0.31135368347168;iRNA_m5C:0.999536712143054 7893 chr4 53578872 53578872 1 + G A rs535996615 53578873 + 53578853 53578893 41 GCCCTCGGCGGCCCGGGGGGCGGGCGGCGGTGCCCGTCCCG GCCCTCGGCGGCCCGGGGGACGGGCGGCGGTGCCCGTCCCG < 41bp 1 0.561566424069879 1 0.9031662940979 experiment 0.876867151860243 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MIR4449 ENSG00000264585 ncRNA_exonic Human miRNA chr4:53578873 chr4:53578872 . . 0 20 hm5C_associated_SNPs_4919 0 0 1 0 0 unknown 1 0.500231643924392 0.1936674118042 0.999536712151216 hm5C_site_7893 DeepMRMD:0.1936674118042;iRNA_m5C:0.999536712151216 7894 chr4 53578872 53578872 1 + G A rs535996615 53578885 + 53578865 53578905 41 CCGGGGGGCGGGCGGCGGTGCCCGTCCCGGGGCTGCGCGAG CCGGGGGACGGGCGGCGGTGCCCGTCCCGGGGCTGCGCGAG < 41bp 1 0.238091046481148 1 0.0776444673538208 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIR4449 ENSG00000264585 ncRNA_exonic Human miRNA chr4:53578885 chr4:53578872 . . 0 8 hm5C_associated_SNPs_4921 0 0 1 0 0 unknown 1 0.500231643924122 1 0.999536712151756 hm5C_site_7894 DeepMRMD:1;iRNA_m5C:0.999536712151756 7895 chr4 53578872 53578872 1 + G A rs535996615 53578886 + 53578866 53578906 41 CGGGGGGCGGGCGGCGGTGCCCGTCCCGGGGCTGCGCGAGG CGGGGGACGGGCGGCGGTGCCCGTCCCGGGGCTGCGCGAGG < 41bp 1 0.121547541602049 1 0.249661684036255 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIR4449 ENSG00000264585 ncRNA_exonic Human miRNA chr4:53578886 chr4:53578872 . . 0 7 hm5C_associated_SNPs_4922 0 0 1 0 0 unknown 1 0.50023164374654 1 0.999536712506921 hm5C_site_7895 DeepMRMD:1;iRNA_m5C:0.999536712506921 7896 chr4 53578872 53578872 1 + G A rs535996615 53578887 + 53578867 53578907 41 GGGGGGCGGGCGGCGGTGCCCGTCCCGGGGCTGCGCGAGGC GGGGGACGGGCGGCGGTGCCCGTCCCGGGGCTGCGCGAGGC < 41bp 1 0.270969014438188 1 0.114484041929245 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIR4449 ENSG00000264585 ncRNA_exonic Human miRNA chr4:53578887 chr4:53578872 . . 0 6 hm5C_associated_SNPs_4923 0 0 1 0 0 unknown 1 0.500231643929682 1 0.999536712140635 hm5C_site_7896 DeepMRMD:1;iRNA_m5C:0.999536712140635 7897 chr4 53578872 53578872 1 + G A rs535996615 53578890 + 53578870 53578910 41 GGGCGGGCGGCGGTGCCCGTCCCGGGGCTGCGCGAGGCACA GGACGGGCGGCGGTGCCCGTCCCGGGGCTGCGCGAGGCACA < 41bp 1 0.395396504962408 1 0.474083453416824 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIR4449 ENSG00000264585 ncRNA_exonic Human miRNA chr4:53578890 chr4:53578872 . . 0 3 hm5C_associated_SNPs_4924 0 0 1 0 0 unknown 1 0.500231643867785 1 0.99953671226443 hm5C_site_7897 DeepMRMD:1;iRNA_m5C:0.99953671226443 7898 chr4 53578872 53578872 1 + G A rs535996615 53578891 + 53578871 53578911 41 GGCGGGCGGCGGTGCCCGTCCCGGGGCTGCGCGAGGCACAG GACGGGCGGCGGTGCCCGTCCCGGGGCTGCGCGAGGCACAG < 41bp 1 0.469260960383769 1 0.850456833839417 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR4449 ENSG00000264585 ncRNA_exonic Human miRNA chr4:53578891 chr4:53578872 . . 0 2 hm5C_associated_SNPs_4925 0 0 1 0 0 unknown 1 0.500231659109365 0.299086332321166 0.99953668178127 hm5C_site_7898 DeepMRMD:0.299086332321166;iRNA_m5C:0.99953668178127 7899 chr4 54244053 54244053 1 + G C rs376917506 54244050 + 54244030 54244070 41 CTAGTGTCGGAGCTGAGCGGCGGGACCGGAGGGGATGAGGA CTAGTGTCGGAGCTGAGCGGCGGCACCGGAGGGGATGAGGA < 41bp 1 0.645264559108542 1 0.528575718402863 experiment 0.709470881782917 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54244050 chr4:54244053 synonymous SNV . 0 24 hm5C_associated_SNPs_4928 0 0 1 0 1 Nucleus 1 0.500231643921092 0.942848563194274 0.999536712157815 hm5C_site_7899 DeepMRMD:0.942848563194274;iRNA_m5C:0.999536712157815 7900 chr4 56291565 56291565 1 + T G rs149833286 56291562 + 56291542 56291582 41 GTGACAATCATAGGAGGCATCGTTTTTTTGGCGTTTGCATT GTGACAATCATAGGAGGCATCGTGTTTTTGGCGTTTGCATT < 41bp 1 0.360381203371727 1 0.301049590110779 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56291562 chr4:56291565 synonymous SNV . 0 24 hm5C_associated_SNPs_4929 0 0 1 0 1 Ribosome 1 0.500231633654516 1 0.999536732690969 hm5C_site_7900 DeepMRMD:1;iRNA_m5C:0.999536732690969 7901 chr4 57180271 57180271 1 + C T rs10018803 57180277 + 57180257 57180297 41 AACGGACACCCAGGCGAGGACAAGCCAACGTGGCACGAAGA AACGGACACCCAGGTGAGGACAAGCCAACGTGGCACGAAGA < 41bp 1 0.3439580845949 1 0.529977202415466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180277 chr4:57180271 synonymous SNV . 0 15 hm5C_associated_SNPs_4930 0 0 0 0 1 cytosol 1 0.500231632711806 0.940045595169068 0.999536734576387 hm5C_site_7901 DeepMRMD:0.940045595169068;iRNA_m5C:0.999536734576387 7902 chr4 57180968 57180968 1 + G C rs112098777 57180982 + 57180962 57181002 41 GACCAGGAACGCCTGAAACCCGAAGGACAAAGAGAACACTC GACCAGCAACGCCTGAAACCCGAAGGACAAAGAGAACACTC < 41bp 1 0.668394133108885 1 0.771894693374634 experiment 0.663211733782229 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180982 chr4:57180968 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_4931 0 0 0 0 0 cytosol 1 0.500231643918021 0.456210613250732 0.999536712163957 hm5C_site_7902 DeepMRMD:0.456210613250732;iRNA_m5C:0.999536712163957 7903 chr4 57181833 57181833 1 + T C rs141775618 57181825 + 57181805 57181845 41 CCGCCAGTCAATGCAAAGTTCTCTATTATGCCTGCCTGGCA CCGCCAGTCAATGCAAAGTTCTCTATTACGCCTGCCTGGCA < 41bp 1 0.549796564340205 1 0.887352705001831 experiment 0.90040687131959 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57181825 chr4:57181833 nonsynonymous SNV 0.962 0 29 hm5C_associated_SNPs_4932 0 0 0 0 0 cytosol 1 0.50023164435472 0.225294589996338 0.99953671129056 hm5C_site_7903 DeepMRMD:0.225294589996338;iRNA_m5C:0.99953671129056 7904 chr4 57326096 57326096 1 + G A rs4132099 57326097 + 57326077 57326117 41 GAGACAGGGTCTCACTGTCGCCCAGGCTGGAGTGCAGTGGC GAGACAGGGTCTCACTGTCACCCAGGCTGGAGTGCAGTGGC < 41bp 1 0.562057118834187 1 0.184219688177109 experiment 0.875885762331626 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PAICS ENSG00000128050 UTR3 Human protein_coding chr4:57326097 chr4:57326096 . . 0 20 hm5C_associated_SNPs_4933 0 0 1 0 0 Ribosome 1 0.500230277931704 1 0.999539444136592 hm5C_site_7904 DeepMRMD:1;iRNA_m5C:0.999539444136592 7905 chr4 57326096 57326096 1 + G A rs4132099 57326098 + 57326078 57326118 41 AGACAGGGTCTCACTGTCGCCCAGGCTGGAGTGCAGTGGCG AGACAGGGTCTCACTGTCACCCAGGCTGGAGTGCAGTGGCG < 41bp 1 0.62917416880416 1 0.436742663383484 experiment 0.74165166239168 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PAICS ENSG00000128050 UTR3 Human protein_coding chr4:57326098 chr4:57326096 . . 0 19 hm5C_associated_SNPs_4934 0 0 1 0 0 Ribosome 1 0.500231640972725 1 0.99953671805455 hm5C_site_7905 DeepMRMD:1;iRNA_m5C:0.99953671805455 7906 chr4 57326096 57326096 1 + G A rs4132099 57326099 + 57326079 57326119 41 GACAGGGTCTCACTGTCGCCCAGGCTGGAGTGCAGTGGCGT GACAGGGTCTCACTGTCACCCAGGCTGGAGTGCAGTGGCGT < 41bp 1 0.673954202832945 1 0.76215535402298 experiment 0.65209159433411 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PAICS ENSG00000128050 UTR3 Human protein_coding chr4:57326099 chr4:57326096 . . 0 18 hm5C_associated_SNPs_4935 0 0 1 0 0 Ribosome 1 0.500231575540243 0.47568929195404 0.999536848919513 hm5C_site_7906 DeepMRMD:0.47568929195404;iRNA_m5C:0.999536848919513 7907 chr4 57326096 57326096 1 + G A rs4132099 57326111 + 57326091 57326131 41 CTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGTTCA CTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTCAGTTCA < 41bp 1 0.670981976729997 1 0.285899639129639 experiment 0.658036046540006 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PAICS ENSG00000128050 UTR3 Human protein_coding chr4:57326111 chr4:57326096 . . 0 6 hm5C_associated_SNPs_4936 0 0 1 0 0 Ribosome 1 0.500231643921014 1 0.999536712157971 hm5C_site_7907 DeepMRMD:1;iRNA_m5C:0.999536712157971 7908 chr4 57326110 57326110 1 + G A rs551408848 57326097 + 57326077 57326117 41 GAGACAGGGTCTCACTGTCGCCCAGGCTGGAGTGCAGTGGC GAGACAGGGTCTCACTGTCGCCCAGGCTGGAGTACAGTGGC < 41bp 1 0.53618653401783 1 0.26167756319046 experiment 0.92762693196434 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PAICS ENSG00000128050 UTR3 Human protein_coding chr4:57326097 chr4:57326110 . . 0 34 hm5C_associated_SNPs_4937 0 0 1 0 0 Ribosome 1 0.500232983613539 1 0.999534032772922 hm5C_site_7908 DeepMRMD:1;iRNA_m5C:0.999534032772922 7909 chr4 57326110 57326110 1 + G A rs551408848 57326098 + 57326078 57326118 41 AGACAGGGTCTCACTGTCGCCCAGGCTGGAGTGCAGTGGCG AGACAGGGTCTCACTGTCGCCCAGGCTGGAGTACAGTGGCG < 41bp 1 0.573184581429028 1 0.551058769226074 experiment 0.853630837141944 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PAICS ENSG00000128050 UTR3 Human protein_coding chr4:57326098 chr4:57326110 . . 0 33 hm5C_associated_SNPs_4938 0 0 1 0 0 Ribosome 1 0.500231643921092 0.897882461547852 0.999536712157815 hm5C_site_7909 DeepMRMD:0.897882461547852;iRNA_m5C:0.999536712157815 7910 chr4 57326110 57326110 1 + G A rs551408848 57326099 + 57326079 57326119 41 GACAGGGTCTCACTGTCGCCCAGGCTGGAGTGCAGTGGCGT GACAGGGTCTCACTGTCGCCCAGGCTGGAGTACAGTGGCGT < 41bp 1 0.574920327951481 1 0.645285129547119 experiment 0.850159344097037 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PAICS ENSG00000128050 UTR3 Human protein_coding chr4:57326099 chr4:57326110 . . 0 32 hm5C_associated_SNPs_4939 0 0 1 0 0 Ribosome 1 0.500231646972279 0.709429740905762 0.999536706055441 hm5C_site_7910 DeepMRMD:0.709429740905762;iRNA_m5C:0.999536706055441 7911 chr4 57326110 57326110 1 + G A rs551408848 57326111 + 57326091 57326131 41 CTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGTTCA CTGTCGCCCAGGCTGGAGTACAGTGGCGTGATCTCAGTTCA < 41bp 1 0.687515134499088 1 0.291035145521164 experiment 0.624969731001824 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PAICS ENSG00000128050 UTR3 Human protein_coding chr4:57326111 chr4:57326110 . . 0 20 hm5C_associated_SNPs_4940 0 0 1 0 0 Ribosome 1 0.500231643736577 1 0.999536712526845 hm5C_site_7911 DeepMRMD:1;iRNA_m5C:0.999536712526845 7912 chr4 57368327 57368327 1 + A G rs144366294 57368345 + 57368325 57368365 41 ACATACCTTATCTAAGGTTTCCCAGGATTTAAACAGAAACT ACGTACCTTATCTAAGGTTTCCCAGGATTTAAACAGAAACT < 41bp 1 0.314845969262796 1 0.170092672109604 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRP72 ENSG00000174780 UTR3 Human protein_coding chr4:57368345 chr4:57368327 . . 0 3 hm5C_associated_SNPs_4941 0 0 1 0 0 Cytosol 1 0.500231643921116 1 0.999536712157767 hm5C_site_7912 DeepMRMD:1;iRNA_m5C:0.999536712157767 7913 chr4 57881715 57881715 1 + G A rs1713982 57881714 + 57881694 57881734 41 GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTA GAGGGAGATTCGGATCTATACAGATGCAGGCCGTATTTGTA < 41bp 1 0.559040904129946 1 0.529812037944794 experiment 0.881918191740108 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57881714 chr4:57881715 synonymous SNV . 0 22 hm5C_associated_SNPs_4942 0 0 1 0 1 Nucleus 1 0.500231643922454 0.940375924110412 0.999536712155093 hm5C_site_7913 DeepMRMD:0.940375924110412;iRNA_m5C:0.999536712155093 7914 chr4 75247458 75247458 1 + C A rs185909766 75247464 + 75247444 75247484 41 AGCACTTTGGGAGGCCGAGGCGGGCGGATCACGGGGTCAGG AGCACTTTGGGAGGACGAGGCGGGCGGATCACGGGGTCAGG < 41bp 1 0.655585539784729 1 0.869213223457336 experiment 0.688828920430542 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EREG ENSG00000124882 intronic Human protein_coding chr4:75247464 chr4:75247458 . . 0 15 hm5C_associated_SNPs_4944 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643926429 0.261573553085328 0.999536712147141 hm5C_site_7914 DeepMRMD:0.261573553085328;iRNA_m5C:0.999536712147141 7915 chr4 75971991 75971991 1 + C T rs546352766 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGTTCTACAAG < 41bp 1 0.143702906080273 1 0.0968783497810364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971991 . . 0 33 hm5C_associated_SNPs_4945 0 0 1 9 0 exosome 1 0.500231643868683 1 0.999536712262634 hm5C_site_7915 DeepMRMD:1;iRNA_m5C:0.999536712262634 7916 chr4 75971997 75971997 1 + A G rs10012438 75971979 + 75971959 75971999 41 TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACAAG TGGTTGTTTCTGACAGGATGCTGCCTGCTTGGCTCTACGAG < 41bp 1 0.161683747362243 1 0.215281307697296 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75971979 chr4:75971997 . . 0 39 hm5C_associated_SNPs_4946 0 0 1 9 0 exosome 1 0.500231643920563 1 0.999536712158874 hm5C_site_7916 DeepMRMD:1;iRNA_m5C:0.999536712158874 7917 chr4 76733389 76733389 1 + T C rs188970532 76733394 + 76733374 76733414 41 ATAGTACCATTGCCATTTTACAAACTGAGAAAGACAAACTA ATAGTACCATTGCCACTTTACAAACTGAGAAAGACAAACTA < 41bp 1 0.236632931278719 1 0.383988380432129 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76733394 chr4:76733389 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_4947 0 0 1 0 1 Nucleus 1 0.500235750463521 1 0.999528499072957 hm5C_site_7917 DeepMRMD:1;iRNA_m5C:0.999528499072957 7918 chr4 77660162 77660162 1 + G A rs344140 77660170 + 77660150 77660190 41 CTGGCATCTCTGGCCGGGAGCGTTCAGGCTCCATGGACAAT CTGGCATCTCTGACCGGGAGCGTTCAGGCTCCATGGACAAT < 41bp 1 0.0107190512271417 1 0.0805315375328064 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660170 chr4:77660162 nonsynonymous SNV 0.001 1 13 hm5C_associated_SNPs_4948 0 0 0 0 0 Ribosome 1 0.500231148637381 1 0.999537702725238 hm5C_site_7918 DeepMRMD:1;iRNA_m5C:0.999537702725238 7919 chr4 77660162 77660162 1 + G A rs344140 77660180 + 77660160 77660200 41 TGGCCGGGAGCGTTCAGGCTCCATGGACAATACTTCTGCTC TGACCGGGAGCGTTCAGGCTCCATGGACAATACTTCTGCTC < 41bp 1 0.109476502984336 1 0.329578191041946 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660180 chr4:77660162 nonsynonymous SNV 0.001 1 3 hm5C_associated_SNPs_4949 0 0 0 0 0 Ribosome 1 0.500229136204466 1 0.999541727591068 hm5C_site_7919 DeepMRMD:1;iRNA_m5C:0.999541727591068 7920 chr4 77660175 77660175 1 + A G rs560258820 77660170 + 77660150 77660190 41 CTGGCATCTCTGGCCGGGAGCGTTCAGGCTCCATGGACAAT CTGGCATCTCTGGCCGGGAGCGTTCGGGCTCCATGGACAAT < 41bp 1 0.021125846359049 1 0.0712301731109619 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660170 chr4:77660175 synonymous SNV . 0 26 hm5C_associated_SNPs_4950 0 0 0 0 0 Ribosome 1 0.500231409613571 1 0.999537180772858 hm5C_site_7920 DeepMRMD:1;iRNA_m5C:0.999537180772858 7921 chr4 77660175 77660175 1 + A G rs560258820 77660180 + 77660160 77660200 41 TGGCCGGGAGCGTTCAGGCTCCATGGACAATACTTCTGCTC TGGCCGGGAGCGTTCGGGCTCCATGGACAATACTTCTGCTC < 41bp 1 0.122037546003026 1 0.473619222640991 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660180 chr4:77660175 synonymous SNV . 0 16 hm5C_associated_SNPs_4951 0 0 0 0 0 Ribosome 1 0.500231649000551 1 0.999536701998897 hm5C_site_7921 DeepMRMD:1;iRNA_m5C:0.999536701998897 7922 chr4 77661165 77661165 1 + G A rs61741120 77661164 + 77661144 77661184 41 TCAGGCTCAGGCCTGGCAAGCGGGTGAAGACAAGAGATCTT TCAGGCTCAGGCCTGGCAAGCAGGTGAAGACAAGAGATCTT < 41bp 1 0.541533236191049 1 0.869160413742065 experiment 0.916933527617902 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661164 chr4:77661165 synonymous SNV . 0 22 hm5C_associated_SNPs_4952 0 0 0 0 0 Ribosome 1 0.500231643922441 0.26167917251587 0.999536712155118 hm5C_site_7922 DeepMRMD:0.26167917251587;iRNA_m5C:0.999536712155118 7923 chr4 77661621 77661621 1 + C T rs61739914 77661608 + 77661588 77661628 41 CAGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGG CAGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGTGCCTCGG < 41bp 1 0.249809931757321 1 0.56812310218811 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661608 chr4:77661621 synonymous SNV . 0 34 hm5C_associated_SNPs_4953 0 0 1 0 0 Ribosome 1 0.500231643921092 0.86375379562378 0.999536712157815 hm5C_site_7923 DeepMRMD:0.86375379562378;iRNA_m5C:0.999536712157815 7924 chr4 77661621 77661621 1 + C T rs61739914 77661609 + 77661589 77661629 41 AGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGC AGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGTGCCTCGGC < 41bp 1 0.514693402471311 1 0.647889852523804 experiment 0.970613195057379 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661609 chr4:77661621 synonymous SNV . 0 33 hm5C_associated_SNPs_4954 0 0 1 0 0 Ribosome 1 0.500231643921092 0.704220294952392 0.999536712157815 hm5C_site_7924 DeepMRMD:0.704220294952392;iRNA_m5C:0.999536712157815 7925 chr4 77661621 77661621 1 + C T rs61739914 77661612 + 77661592 77661632 41 CTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGCTCT CTGGGCCGGAGGGGGCCCGGCCCAGGCAGTGCCTCGGCTCT < 41bp 1 0.257335145033593 1 0.207080543041229 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661612 chr4:77661621 synonymous SNV . 0 30 hm5C_associated_SNPs_4955 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7925 DeepMRMD:1;iRNA_m5C:0.999536712157815 7926 chr4 77661621 77661621 1 + C T rs61739914 77661613 + 77661593 77661633 41 TGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGCTCTT TGGGCCGGAGGGGGCCCGGCCCAGGCAGTGCCTCGGCTCTT < 41bp 1 0.400074153694127 1 0.236189782619476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661613 chr4:77661621 synonymous SNV . 0 29 hm5C_associated_SNPs_4956 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7926 DeepMRMD:1;iRNA_m5C:0.999536712157815 7927 chr4 77661621 77661621 1 + C T rs61739914 77661614 + 77661594 77661634 41 GGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGCTCTTC GGGCCGGAGGGGGCCCGGCCCAGGCAGTGCCTCGGCTCTTC < 41bp 1 0.679154304462607 1 0.60331392288208 experiment 0.641691391074786 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661614 chr4:77661621 synonymous SNV . 0 28 hm5C_associated_SNPs_4957 0 0 1 0 0 Ribosome 1 0.500231643921062 0.79337215423584 0.999536712157876 hm5C_site_7927 DeepMRMD:0.79337215423584;iRNA_m5C:0.999536712157876 7928 chr4 77676306 77676306 1 + C A rs61741132 77676308 + 77676288 77676328 41 CCCACACTGTATGTGAGGCGCAGCTGGACAGTGAGGATCCC CCCACACTGTATGTGAGGAGCAGCTGGACAGTGAGGATCCC < 41bp 1 0.217914135051298 1 0.146052181720734 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77676308 chr4:77676306 nonsynonymous SNV 0.000 0 19 hm5C_associated_SNPs_4958 0 0 1 0 1 Ribosome 1 0.500231643921089 1 0.999536712157821 hm5C_site_7928 DeepMRMD:1;iRNA_m5C:0.999536712157821 7929 chr4 77676307 77676307 1 + G A rs374194465 77676308 + 77676288 77676328 41 CCCACACTGTATGTGAGGCGCAGCTGGACAGTGAGGATCCC CCCACACTGTATGTGAGGCACAGCTGGACAGTGAGGATCCC < 41bp 1 0.222747218371803 1 0.0705729126930237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77676308 chr4:77676307 synonymous SNV . 0 20 hm5C_associated_SNPs_4959 0 0 1 0 1 Ribosome 1 0.500231643921067 1 0.999536712157865 hm5C_site_7929 DeepMRMD:1;iRNA_m5C:0.999536712157865 7930 chr4 77676309 77676309 1 + A C rs138661793 77676308 + 77676288 77676328 41 CCCACACTGTATGTGAGGCGCAGCTGGACAGTGAGGATCCC CCCACACTGTATGTGAGGCGCCGCTGGACAGTGAGGATCCC < 41bp 1 0.0839438584849766 1 0.0481798946857452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77676308 chr4:77676309 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_4960 0 0 1 0 1 Ribosome 1 0.500231646545623 1 0.999536706908753 hm5C_site_7930 DeepMRMD:1;iRNA_m5C:0.999536706908753 7931 chr4 79173616 79173616 1 + C A rs147709711 79173606 + 79173586 79173626 41 CTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC CTTGCAATCATGGGGAAGTCCGATGTACCCACCAACCATGC < 41bp 1 0.19566296148871 1 0.71486896276474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79173606 chr4:79173616 nonsynonymous SNV 0.001 0 31 hm5C_associated_SNPs_4961 0 0 1 0 2 Nucleus 1 0.500231643920329 0.57026207447052 0.999536712159343 hm5C_site_7931 DeepMRMD:0.57026207447052;iRNA_m5C:0.999536712159343 7932 chr4 79293958 79293958 1 + G A rs111554790 79293970 + 79293950 79293990 41 AGGATGGGGCCTGCGTGGAGCAGTGCTTGTCATCATTTTAC AGGATGGGACCTGCGTGGAGCAGTGCTTGTCATCATTTTAC < 41bp 1 0.0989424194073608 1 0.180052816867828 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79293970 chr4:79293958 nonsynonymous SNV 0.004 0 9 hm5C_associated_SNPs_4962 0 0 1 0 0 Nucleus 1 0.500231643916964 1 0.999536712166072 hm5C_site_7932 DeepMRMD:1;iRNA_m5C:0.999536712166072 7933 chr4 79293960 79293960 1 + C A rs145571470 79293970 + 79293950 79293990 41 AGGATGGGGCCTGCGTGGAGCAGTGCTTGTCATCATTTTAC AGGATGGGGCATGCGTGGAGCAGTGCTTGTCATCATTTTAC < 41bp 1 0.123700252388436 1 0.360542178153992 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79293970 chr4:79293960 synonymous SNV . 0 11 hm5C_associated_SNPs_4963 0 0 1 0 0 Nucleus 1 0.500231644850172 1 0.999536710299656 hm5C_site_7933 DeepMRMD:1;iRNA_m5C:0.999536710299656 7934 chr4 79437035 79437035 1 + C G rs367736604 79437053 + 79437033 79437073 41 AGCGTGCGAGAGCCGAAGACCATCCAGCTCTACAAACACCT AGGGTGCGAGAGCCGAAGACCATCCAGCTCTACAAACACCT < 41bp 1 0.0525757275004126 1 0.107579469680786 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79437053 chr4:79437035 nonsynonymous SNV 0.132 0 3 hm5C_associated_SNPs_4964 0 0 1 0 1 Nucleus 1 0.500402006278664 1 0.999195987442671 hm5C_site_7934 DeepMRMD:1;iRNA_m5C:0.999195987442671 7935 chr4 79437047 79437047 1 + G A rs34806279 79437053 + 79437033 79437073 41 AGCGTGCGAGAGCCGAAGACCATCCAGCTCTACAAACACCT AGCGTGCGAGAGCCAAAGACCATCCAGCTCTACAAACACCT < 41bp 1 0.0560709446886101 1 0.127467393875122 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79437053 chr4:79437047 synonymous SNV . 0 15 hm5C_associated_SNPs_4965 0 0 1 0 1 Nucleus 1 0.500231636730727 1 0.999536726538547 hm5C_site_7935 DeepMRMD:1;iRNA_m5C:0.999536726538547 7936 chr4 79437056 79437056 1 + C T rs34678339 79437053 + 79437033 79437073 41 AGCGTGCGAGAGCCGAAGACCATCCAGCTCTACAAACACCT AGCGTGCGAGAGCCGAAGACCATTCAGCTCTACAAACACCT < 41bp 1 0.0285117368585555 1 0.0897422134876251 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79437053 chr4:79437056 synonymous SNV . 0 24 hm5C_associated_SNPs_4966 1 0 1 0 0 Nucleus 1 0.500259302310929 1 0.999481395378143 hm5C_site_7936 DeepMRMD:1;iRNA_m5C:0.999481395378143 Cryptophthalmos syndrome Cryptophthalmos syndrome 7937 chr4 79440589 79440589 1 + C A rs149604281 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCTCCTTGGAGCACCACACAGAGATGGAGTTTTCTTTCT < 41bp 1 0.330424930744883 1 0.669543266296387 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440589 synonymous SNV . 0 22 hm5C_associated_SNPs_4967 0 0 1 0 1 Nucleus 1 0.500231643921959 0.660913467407226 0.999536712156082 hm5C_site_7937 DeepMRMD:0.660913467407226;iRNA_m5C:0.999536712156082 7938 chr4 81208102 81208102 1 + C T rs115729960 81208091 + 81208071 81208111 41 TGCTTGAGGGATATTTAGAACTTTGTATTTTCGGAAAGTTA TGCTTGAGGGATATTTAGAACTTTGTATTTTTGGAAAGTTA < 41bp 1 0.113757262597875 1 0.0846037864685059 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FGF5 ENSG00000138675 UTR3 Human protein_coding chr4:81208091 chr4:81208102 . . 0 32 hm5C_associated_SNPs_4968 0 0 0 0 0 Nucleus 1 0.500231649777848 1 0.999536700444304 hm5C_site_7938 DeepMRMD:1;iRNA_m5C:0.999536700444304 7939 chr4 86700006 86700006 1 + A C rs79226477 86700025 + 86700005 86700045 41 CAAGCTCTGTACTTTTTTGCCAAAAGAATTAACTTTAAACT CCAGCTCTGTACTTTTTTGCCAAAAGAATTAACTTTAAACT < 41bp 1 0.184118016689601 1 0.142350137233734 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGAP24 ENSG00000138639 UTR5 Human protein_coding chr4:86700025 chr4:86700006 . . 0 2 hm5C_associated_SNPs_4969 0 0 0 0 0 Cytosol 1 0.500231643412194 1 0.999536713175612 hm5C_site_7939 DeepMRMD:1;iRNA_m5C:0.999536713175612 7940 chr4 87691080 87691080 1 + G A rs147000473 87691060 + 87691040 87691080 41 CTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATG CTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATA < 41bp 1 0.246676543665632 1 0.520238995552063 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691060 chr4:87691080 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_4971 0 0 1 0 1 Ribosome 1 0.500231641943586 0.959522008895874 0.999536716112829 hm5C_site_7940 DeepMRMD:0.959522008895874;iRNA_m5C:0.999536716112829 7941 chr4 88047314 88047314 1 + G A rs139239111 88047316 + 88047296 88047336 41 CCCGCCACCCGTGTCCTCGTCCTCCCAGAAGCCAGCCAAGC CCCGCCACCCGTGTCCTCATCCTCCCAGAAGCCAGCCAAGC < 41bp 1 0.0482817364752648 1 0.261179387569427 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFF1 ENSG00000172493 CDS Human protein_coding chr4:88047316 chr4:88047314 synonymous SNV . 0 19 hm5C_associated_SNPs_4972 0 0 1 0 1 Nucleus 1 0.500231643920985 1 0.99953671215803 hm5C_site_7941 DeepMRMD:1;iRNA_m5C:0.99953671215803 7942 chr4 88047328 88047328 1 + C T rs144038967 88047316 + 88047296 88047336 41 CCCGCCACCCGTGTCCTCGTCCTCCCAGAAGCCAGCCAAGC CCCGCCACCCGTGTCCTCGTCCTCCCAGAAGCTAGCCAAGC < 41bp 1 0.0386403096169114 1 0.310991048812866 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFF1 ENSG00000172493 CDS Human protein_coding chr4:88047316 chr4:88047328 nonsynonymous SNV 0.958 2 33 hm5C_associated_SNPs_4973 0 0 1 0 1 Nucleus 1 0.500231643921125 1 0.99953671215775 hm5C_site_7942 DeepMRMD:1;iRNA_m5C:0.99953671215775 7943 chr4 95373088 95373088 1 + G C rs147199893 95373087 + 95373067 95373107 41 TGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTG TGGGGACGGCGCCCTCACCGCCAGTCACTTGTCAGCCCTTG < 41bp 1 0.563136084077193 1 0.228128463029861 experiment 0.873727831845614 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDLIM5 ENSG00000163110 UTR5 Human protein_coding chr4:95373087 chr4:95373088 . . 0 22 hm5C_associated_SNPs_4977 0 0 1 0 1 Nucleus 1 0.50023174302071 1 0.99953651395858 hm5C_site_7943 DeepMRMD:1;iRNA_m5C:0.99953651395858 7944 chr4 95588674 95588674 1 + T C rs12294 95588672 + 95588652 95588692 41 AAAGTGTATGGTAGGATGTGCATAGGTTATATGCAAATACT AAAGTGTATGGTAGGATGTGCACAGGTTATATGCAAATACT < 41bp 1 0.41696788044287 1 0.377562284469604 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDLIM5 ENSG00000163110 UTR3 Human protein_coding chr4:95588672 chr4:95588674 . . 0 23 hm5C_associated_SNPs_4980 0 0 1 1 0 Nucleus 1 0.500229615678521 1 0.999540768642958 hm5C_site_7944 DeepMRMD:1;iRNA_m5C:0.999540768642958 7945 chr4 103422880 103422880 1 + G A rs539675719 103422878 + 103422858 103422898 41 CCTCTTCCTTCTCCAGCCGGCAGGCCCGCGCCGCTTAGGAG CCTCTTCCTTCTCCAGCCGGCAAGCCCGCGCCGCTTAGGAG < 41bp 1 0.344838631608696 1 0.115247040987015 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LOC105377621 ENSG00000109320 UTR5 Human protein_coding chr4:103422878 chr4:103422880 . . 0 23 hm5C_associated_SNPs_4981 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_7945 DeepMRMD:1;iRNA_m5C:0.999536712157815 7946 chr4 103522114 103522114 1 + C T rs4648085 103522101 + 103522081 103522121 41 ATTCTCAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT ATTCTCAACTTGTGAGGGATCTACTAGAAGTCATATCTGGT < 41bp 1 0.152035769307114 1 0.406553566455841 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103522101 chr4:103522114 nonsynonymous SNV 0.806 0 34 hm5C_associated_SNPs_4982 0 0 1 0 1 Ribosome 1 0.500231643921045 1 0.99953671215791 hm5C_site_7946 DeepMRMD:1;iRNA_m5C:0.99953671215791 7947 chr4 103806563 103806563 1 + T C rs151223492 103806576 + 103806556 103806596 41 CAGCTTATTGTAGGTGTTGGCGTTCTAAAACGGTAAGATGT CAGCTTACTGTAGGTGTTGGCGTTCTAAAACGGTAAGATGT < 41bp 1 0.0697270081996209 1 0.487855136394501 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CISD2 ENSG00000145354 CDS Human protein_coding chr4:103806576 chr4:103806563 synonymous SNV . 0 8 hm5C_associated_SNPs_4983 0 0 1 0 1 Ribosome 1 0.500231619298709 1 0.999536761402582 hm5C_site_7947 DeepMRMD:1;iRNA_m5C:0.999536761402582 7948 chr4 107268866 107268866 1 + A G rs185429433 107268858 + 107268838 107268878 41 GGAATCAAATAAAATGCTTCCACTACCAAAAGACATTAGAG GGAATCAAATAAAATGCTTCCACTACCAGAAGACATTAGAG < 41bp 1 0.448018427925817 1 0.330633461475372 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AIMP1 ENSG00000164022 UTR3 Human protein_coding chr4:107268858 chr4:107268866 . . 0 29 hm5C_associated_SNPs_4985 0 0 1 0 0 Ribosome 1 0.500231643921192 1 0.999536712157615 hm5C_site_7948 DeepMRMD:1;iRNA_m5C:0.999536712157615 7949 chr4 109541728 109541728 1 + T G rs185289604 109541732 + 109541712 109541752 41 CTGGCAAAGGCTTTTTTCTTCCTCTTCCGGGGACGTTGTCT CTGGCAAAGGCTTTTTGCTTCCTCTTCCGGGGACGTTGTCT < 41bp 1 0.0636965054956582 1 0.0337621569633484 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL34 ENSG00000109475 UTR5 Human protein_coding chr4:109541732 chr4:109541728 . . 0 17 hm5C_associated_SNPs_4986 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_7949 DeepMRMD:1;iRNA_m5C:0.999536712157815 7950 chr4 110581363 110581363 1 + T A rs4698744 110581382 + 110581362 110581402 41 ATTTATAGACATGGCCTTCCCTTGGTAACACTTACCTTGCC AATTATAGACATGGCCTTCCCTTGGTAACACTTACCTTGCC < 41bp 1 0.614597281300396 1 0.712436079978943 experiment 0.770805437399208 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCUB ENSG00000005059 CDS Human protein_coding chr4:110581382 chr4:110581363 nonsynonymous SNV 0.983 0 2 hm5C_associated_SNPs_4989 0 0 0 0 1 unknown 1 0.500231644152364 0.575127840042114 0.999536711695272 hm5C_site_7950 DeepMRMD:0.575127840042114;iRNA_m5C:0.999536711695272 7951 chr4 113299008 113299008 1 + G A rs61747962 113298991 + 113298971 113299011 41 AGTGCAAGCAAGTGCTGGATCAGCTCTTGTTGGAAGCGCCA AGTGCAAGCAAGTGCTGGATCAGCTCTTGTTGGAAGCACCA < 41bp 1 0.591962949251403 1 0.288553059101105 experiment 0.816074101497193 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113298991 chr4:113299008 synonymous SNV . 0 38 hm5C_associated_SNPs_4990 0 0 0 0 1 chromatin 1 0.500231605907314 1 0.999536788185373 hm5C_site_7951 DeepMRMD:1;iRNA_m5C:0.999536788185373 7952 chr4 115589302 115589302 1 + A G rs11098261 115589284 + 115589264 115589304 41 CTGAGCCATGGTGGTTTGAACAGTATTTTTGAAACTATATA CTGAGCCATGGTGGTTTGAACAGTATTTTTGAAACTATGTA < 41bp 1 0.477128488780213 1 0.0985077917575836 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UGT8 ENSG00000174607 CDS Human protein_coding chr4:115589284 chr4:115589302 nonsynonymous SNV 0.999 0 39 hm5C_associated_SNPs_4991 0 0 0 0 1 Ribosome 1 0.50023164392288 1 0.999536712154239 hm5C_site_7952 DeepMRMD:1;iRNA_m5C:0.999536712154239 7953 chr4 120133918 120133918 1 + T A rs113153547 120133936 + 120133916 120133956 41 GGTGTCGGCGTGAAGCGGGGCTGGGCCAGCGGGAGGTAGCT GGAGTCGGCGTGAAGCGGGGCTGGGCCAGCGGGAGGTAGCT < 41bp 1 0.602273134194318 1 0.305936753749847 experiment 0.795453731611364 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP53 ENSG00000145390 UTR5 Human protein_coding chr4:120133936 chr4:120133918 . . 0 3 hm5C_associated_SNPs_4992 0 0 1 0 0 Nucleus 1 0.500231643445967 1 0.999536713108067 hm5C_site_7953 DeepMRMD:1;iRNA_m5C:0.999536713108067 7954 chr4 123748473 123748473 1 + A C rs183060480 123748458 + 123748438 123748478 41 GGGGGCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGA GGGGGCTTCTTCCTGCGCATCCACCCCGACGGCCGCGTTGA < 41bp 1 0.161951851832237 1 0.053317129611969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748458 chr4:123748473 synonymous SNV . 0 36 hm5C_associated_SNPs_4993 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_7954 DeepMRMD:1;iRNA_m5C:0.999536712157814 7955 chr4 128748500 128748500 1 + A G rs563636394 128748508 + 128748488 128748528 41 ACATGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG ACATGGAGCATGGAGAGAGACCAAAAGCCTTAAATGACTTG < 41bp 1 0.368924962567058 1 0.323588490486145 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128748508 chr4:128748500 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_4995 0 0 1 0 2 Cytosol 1 0.500231643933579 1 0.999536712132842 hm5C_site_7955 DeepMRMD:1;iRNA_m5C:0.999536712132842 7956 chr4 140265351 140265351 1 + C T rs373862543 140265344 + 140265324 140265364 41 TTATATCCATATACAGACATCCCCTGACAAGGTGGATTATG TTATATCCATATACAGACATCCCCTGATAAGGTGGATTATG < 41bp 1 0.0999704659763345 1 0.0243389010429382 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA15 ENSG00000164134 CDS Human protein_coding chr4:140265344 chr4:140265351 synonymous SNV . 0 28 hm5C_associated_SNPs_4996 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_7956 DeepMRMD:1;iRNA_m5C:0.999536712157815 7957 chr4 142142149 142142149 1 + G A rs182929984 142142162 + 142142142 142142182 41 TCCACGAGTTGGATTTACTGCTGTCGCGGGTGGGCCTCACG TCCACGAATTGGATTTACTGCTGTCGCGGGTGGGCCTCACG < 41bp 1 0.391059071901242 1 0.0730695426464081 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF330 ENSG00000109445 UTR5 Human protein_coding chr4:142142162 chr4:142142149 . . 0 8 hm5C_associated_SNPs_4997 0 0 1 0 0 Cytosol 1 0.500229844962329 1 0.999540310075342 hm5C_site_7957 DeepMRMD:1;iRNA_m5C:0.999540310075342 7958 chr4 146463822 146463822 1 + T C rs139872383 146463820 + 146463800 146463840 41 TGGACACAAACATGATGGCGCCTCCCCTGCCCTCAGAAATC TGGACACAAACATGATGGCGCCCCCCCTGCCCTCAGAAATC < 41bp 1 0.0600241447676365 1 0.0496829748153687 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463820 chr4:146463822 synonymous SNV . 0 23 hm5C_associated_SNPs_4998 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_7958 DeepMRMD:1;iRNA_m5C:0.999536712157815 7959 chr4 147096888 147096888 1 + G T rs571469505 147096887 + 147096867 147096907 41 TGCCCCTGCCTCGGCGCTTTCGGTTTTGGCTGGGATCATCC TGCCCCTGCCTCGGCGCTTTCTGTTTTGGCTGGGATCATCC < 41bp 1 0.536083435932735 1 0.0686160326004028 experiment 0.92783312813453 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LSM6 ENSG00000164167 UTR5 Human protein_coding chr4:147096887 chr4:147096888 . . 0 22 hm5C_associated_SNPs_4999 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7959 DeepMRMD:1;iRNA_m5C:0.999536712157815 7960 chr4 148796253 148796253 1 + C T rs538578376 148796249 + 148796229 148796269 41 AGACAGAATCCCAAGGACCACAAACGAGCAAGTCAGTTTAC AGACAGAATCCCAAGGACCACAAATGAGCAAGTCAGTTTAC < 41bp 1 0.348768857829901 1 0.11086368560791 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148796249 chr4:148796253 stopgain 0.997 1 25 hm5C_associated_SNPs_5000 0 0 1 0 2 Nucleus 1 0.500231643920654 1 0.999536712158692 hm5C_site_7960 DeepMRMD:1;iRNA_m5C:0.999536712158692 7961 chr4 151177340 151177340 1 + C T rs13152819 151177347 + 151177327 151177367 41 TCCCACCCCCCACCCTCCTCCCGCTGCCCCGGGTGGTGAGC TCCCACCCCCCACTCTCCTCCCGCTGCCCCGGGTGGTGAGC < 41bp 1 0.12671448346081 1 0.237399071455002 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151177347 chr4:151177340 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_5001 0 0 0 0 0 Nucleus 1 0.500231643922965 1 0.99953671215407 hm5C_site_7961 DeepMRMD:1;iRNA_m5C:0.99953671215407 7962 chr4 151177341 151177341 1 + C G rs13152820 151177347 + 151177327 151177367 41 TCCCACCCCCCACCCTCCTCCCGCTGCCCCGGGTGGTGAGC TCCCACCCCCCACCGTCCTCCCGCTGCCCCGGGTGGTGAGC < 41bp 1 0.132026138963284 1 0.472246378660202 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151177347 chr4:151177341 nonsynonymous SNV 0.003 0 15 hm5C_associated_SNPs_5002 0 0 0 0 0 Nucleus 1 0.500231643848359 1 0.999536712303283 hm5C_site_7962 DeepMRMD:1;iRNA_m5C:0.999536712303283 7963 chr4 153896257 153896257 1 + C T rs113529553 153896264 + 153896244 153896284 41 AAACCTCAGGCCTCGGGGGGCCAGGAGGAGGCCCCCAACCC AAACCTCAGGCCTTGGGGGGCCAGGAGGAGGCCCCCAACCC < 41bp 1 0.410357783500229 1 0.61568808555603 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896264 chr4:153896257 nonsynonymous SNV 0.156 0 14 hm5C_associated_SNPs_5003 0 0 0 0 0 Nucleus 1 0.500231643921092 0.76862382888794 0.999536712157815 hm5C_site_7963 DeepMRMD:0.76862382888794;iRNA_m5C:0.999536712157815 7964 chr4 153896258 153896258 1 + G A rs543033549 153896264 + 153896244 153896284 41 AAACCTCAGGCCTCGGGGGGCCAGGAGGAGGCCCCCAACCC AAACCTCAGGCCTCAGGGGGCCAGGAGGAGGCCCCCAACCC < 41bp 1 0.424406633354411 1 0.760956525802612 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896264 chr4:153896258 synonymous SNV . 0 15 hm5C_associated_SNPs_5004 0 0 0 0 0 Nucleus 1 0.500231643921093 0.478086948394776 0.999536712157815 hm5C_site_7964 DeepMRMD:0.478086948394776;iRNA_m5C:0.999536712157815 7965 chr4 153896258 153896258 1 + G A rs543033549 153896278 + 153896258 153896298 41 GGGGGGCCAGGAGGAGGCCCCCAACCCACCCTCAGCACAGG AGGGGGCCAGGAGGAGGCCCCCAACCCACCCTCAGCACAGG < 41bp 1 0.0759252864514307 1 0.413392663002014 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896278 chr4:153896258 synonymous SNV . 0 1 hm5C_associated_SNPs_5005 0 0 0 0 0 Nucleus 1 0.500231643852103 1 0.999536712295794 hm5C_site_7965 DeepMRMD:1;iRNA_m5C:0.999536712295794 7966 chr4 153896299 153896299 1 + C A rs77425963 153896279 + 153896259 153896299 41 GGGGGCCAGGAGGAGGCCCCCAACCCACCCTCAGCACAGGC GGGGGCCAGGAGGAGGCCCCCAACCCACCCTCAGCACAGGA < 41bp 1 0.240636985342252 1 0.160038262605667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896279 chr4:153896299 nonsynonymous SNV 0.000 0 41 hm5C_associated_SNPs_5006 0 0 0 0 0 Nucleus 1 0.500231636158048 1 0.999536727683904 hm5C_site_7966 DeepMRMD:1;iRNA_m5C:0.999536727683904 7967 chr4 154197174 154197174 1 + C A rs536693739 154197184 + 154197164 154197204 41 ACCTGATGGACGTGCTGCAGCGAACTCCAGGCAGCAACGCT ACCTGATGGAAGTGCTGCAGCGAACTCCAGGCAGCAACGCT < 41bp 1 0.248933004515236 1 0.100372076034546 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154197184 chr4:154197174 nonsynonymous SNV 0.992 1 11 hm5C_associated_SNPs_5007 0 0 1 0 0 Ribosome 1 0.500231644459555 1 0.99953671108089 hm5C_site_7967 DeepMRMD:1;iRNA_m5C:0.99953671108089 7968 chr4 159593512 159593512 1 + G A rs183609368 159593523 + 159593503 159593543 41 TTCCGGCAGGTGATGGCGCCCCCCGCGGCCTAGAGGTCCAG TTCCGGCAGATGATGGCGCCCCCCGCGGCCTAGAGGTCCAG < 41bp 1 0.394827936671133 1 0.112759560346603 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETFDH ENSG00000171503 UTR5 Human protein_coding chr4:159593523 chr4:159593512 . . 0 10 hm5C_associated_SNPs_5008 1 0 1 0 0 Ribosome 1 0.500231643948519 1 0.999536712102962 hm5C_site_7968 DeepMRMD:1;iRNA_m5C:0.999536712102962 Glutaric aciduria, type 2 Glutaric aciduria, type 2 7969 chr4 160264503 160264503 1 + C A rs188622665 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCAAGTTG < 41bp 1 0.584895992360325 1 0.565217554569244 experiment 0.830208015279351 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264503 nonsynonymous SNV 0.972 1 37 hm5C_associated_SNPs_5009 0 0 1 0 2 Cytosol 1 0.500231643962949 0.869564890861512 0.999536712074102 hm5C_site_7969 DeepMRMD:0.869564890861512;iRNA_m5C:0.999536712074102 7970 chr4 165960681 165960681 1 + T C rs541467179 165960668 + 165960648 165960688 41 CACTTAGATTCAGACGGGCTCGGCCGGGCGCGGTGGCTCAC CACTTAGATTCAGACGGGCTCGGCCGGGCGCGGCGGCTCAC < 41bp 1 0.586150312293573 1 0.640080809593201 experiment 0.827699375412853 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM60 ENSG00000176979 UTR5 Human protein_coding chr4:165960668 chr4:165960681 . . 0 34 hm5C_associated_SNPs_5010 0 0 0 0 2 unknown 1 0.500231643921092 0.719838380813598 0.999536712157815 hm5C_site_7970 DeepMRMD:0.719838380813598;iRNA_m5C:0.999536712157815 7971 chr4 165960681 165960681 1 + T C rs541467179 165960698 + 165960678 165960718 41 CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA CGGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA < 41bp 1 0.489436190775741 1 0.169619202613831 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM60 ENSG00000176979 UTR5 Human protein_coding chr4:165960698 chr4:165960681 . . 0 4 hm5C_associated_SNPs_5011 0 0 0 0 2 unknown 1 0.500231641544681 1 0.999536716910638 hm5C_site_7971 DeepMRMD:1;iRNA_m5C:0.999536716910638 7972 chr4 165960681 165960681 1 + T C rs541467179 165960699 + 165960679 165960719 41 GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG GGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG < 41bp 1 0.317473891218012 1 0.11124461889267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM60 ENSG00000176979 UTR5 Human protein_coding chr4:165960699 chr4:165960681 . . 0 3 hm5C_associated_SNPs_5012 0 0 0 0 2 unknown 1 0.50023060019546 1 0.999538799609079 hm5C_site_7972 DeepMRMD:1;iRNA_m5C:0.999538799609079 7973 chr4 166263534 166263534 1 + A G rs1136537 166263545 + 166263525 166263565 41 TTTTGAGACAAAGCCACACTCTGTCTCCTTGGCTGGAGTGT TTTTGAGACGAAGCCACACTCTGTCTCCTTGGCTGGAGTGT < 41bp 1 0.482927220899833 1 0.101845562458038 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MSMO1 ENSG00000052802 UTR3 Human protein_coding chr4:166263545 chr4:166263534 . . 0 10 hm5C_associated_SNPs_5013 0 0 1 0 0 Ribosome 1 0.500231641845712 1 0.999536716308576 hm5C_site_7973 DeepMRMD:1;iRNA_m5C:0.999536716308576 7974 chr4 167024189 167024189 1 + T C rs58022968 167024202 + 167024182 167024222 41 TACACTTTGAGGACTGTCATCATGTTCTCGTTTTGTAGTTC TACACTTCGAGGACTGTCATCATGTTCTCGTTTTGTAGTTC < 41bp 1 0.150532427259809 1 0.367584228515625 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLL1 ENSG00000038295 UTR3 Human protein_coding chr4:167024202 chr4:167024189 . . 0 8 hm5C_associated_SNPs_5014 0 0 0 0 0 nucleus 1 0.500149924959099 1 0.999700150081801 hm5C_site_7974 DeepMRMD:1;iRNA_m5C:0.999700150081801 7975 chr4 169630204 169630204 1 + T G rs58395080 169630201 + 169630181 169630221 41 GAGATTTGCACCCTAGTTATCGCTGAGACTTTCCCTGAAGA GAGATTTGCACCCTAGTTATCGCGGAGACTTTCCCTGAAGA < 41bp 1 0.558127625415437 1 0.908073008060455 experiment 0.883744749169125 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169630201 chr4:169630204 synonymous SNV . 0 24 hm5C_associated_SNPs_5015 1 0 0 0 2 Cytosol 1 0.500231643921092 0.18385398387909 0.999536712157815 hm5C_site_7975 DeepMRMD:0.18385398387909;iRNA_m5C:0.999536712157815 Carcinoma of pancreas Carcinoma of pancreas 7976 chr4 169753213 169753213 1 + G A rs61747100 169753224 + 169753204 169753244 41 GGCGGGCGAGGTATAAAGCCCGATACCTGCCCCGCGCCCGG GGCGGGCGAAGTATAAAGCCCGATACCTGCCCCGCGCCCGG < 41bp 1 0.458218921629105 1 0.510231554508209 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PALLD ENSG00000249609 ncRNA_intronic Human antisense chr4:169753224 chr4:169753213 . . 0 10 hm5C_associated_SNPs_5016 0 0 0 0 0 Cytosol 1 0.500231643921093 0.979536890983582 0.999536712157813 hm5C_site_7976 DeepMRMD:0.979536890983582;iRNA_m5C:0.999536712157813 7977 chr4 174243631 174243631 1 + T C rs3775590 174243630 + 174243610 174243650 41 TGGAAGTTGTGTAGCATTCACTCCCTTACCTACTGGCATTC TGGAAGTTGTGTAGCATTCACCCCCTTACCTACTGGCATTC < 41bp 1 0.394778546325516 1 0.0553660094738007 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALNT7 ENSG00000248774 ncRNA_exonic Human antisense chr4:174243630 chr4:174243631 . . 0 22 hm5C_associated_SNPs_5017 0 0 1 0 0 chromatin 1 0.500249062299873 1 0.999501875400254 hm5C_site_7977 DeepMRMD:1;iRNA_m5C:0.999501875400254 7978 chr4 177251500 177251500 1 + A C rs559000193 177251516 + 177251496 177251536 41 GATAAGCCTGCAGTCTTAACCAGACCTGGTACCAGTTTAAC GATACGCCTGCAGTCTTAACCAGACCTGGTACCAGTTTAAC < 41bp 1 0.59925692729521 1 0.873715877532959 experiment 0.80148614540958 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SPCS3 ENSG00000129128 UTR3 Human protein_coding chr4:177251516 chr4:177251500 . . 0 5 hm5C_associated_SNPs_5018 0 0 1 0 0 Ribosome 1 0.50023164392386 0.252568244934082 0.99953671215228 hm5C_site_7978 DeepMRMD:0.252568244934082;iRNA_m5C:0.99953671215228 7979 chr4 177251505 177251505 1 + G A rs73871985 177251516 + 177251496 177251536 41 GATAAGCCTGCAGTCTTAACCAGACCTGGTACCAGTTTAAC GATAAGCCTACAGTCTTAACCAGACCTGGTACCAGTTTAAC < 41bp 1 0.579550073990141 1 0.813341379165649 experiment 0.840899852019719 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SPCS3 ENSG00000129128 UTR3 Human protein_coding chr4:177251516 chr4:177251505 . . 0 10 hm5C_associated_SNPs_5019 0 0 1 0 0 Ribosome 1 0.500231643921092 0.373317241668702 0.999536712157815 hm5C_site_7979 DeepMRMD:0.373317241668702;iRNA_m5C:0.999536712157815 7980 chr4 177251521 177251521 1 + C T rs143387131 177251516 + 177251496 177251536 41 GATAAGCCTGCAGTCTTAACCAGACCTGGTACCAGTTTAAC GATAAGCCTGCAGTCTTAACCAGACTTGGTACCAGTTTAAC < 41bp 1 0.653632988803227 1 0.848335087299347 experiment 0.692734022393546 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SPCS3 ENSG00000129128 UTR3 Human protein_coding chr4:177251516 chr4:177251521 . . 0 26 hm5C_associated_SNPs_5020 0 0 1 0 0 Ribosome 1 0.500231643921034 0.303329825401306 0.999536712157933 hm5C_site_7980 DeepMRMD:0.303329825401306;iRNA_m5C:0.999536712157933 7981 chr4 177252884 177252884 1 + C T rs187746327 177252890 + 177252870 177252910 41 GCTGGGATTACAGGCGCCCGCCACCACGTCCGGCTAATTTT GCTGGGATTACAGGTGCCCGCCACCACGTCCGGCTAATTTT < 41bp 1 0.532509660457825 1 0.194089889526367 experiment 0.93498067908435 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPCS3 ENSG00000129128 UTR3 Human protein_coding chr4:177252890 chr4:177252884 . . 0 15 hm5C_associated_SNPs_5021 0 0 0 0 0 Ribosome 1 0.500231643918665 1 0.99953671216267 hm5C_site_7981 DeepMRMD:1;iRNA_m5C:0.99953671216267 7982 chr4 177252897 177252897 1 + G A rs192512068 177252884 + 177252864 177252904 41 GGAGTAGCTGGGATTACAGGCGCCCGCCACCACGTCCGGCT GGAGTAGCTGGGATTACAGGCGCCCGCCACCACATCCGGCT < 41bp 1 0.697445274669136 1 0.50410932302475 experiment 0.605109450661727 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPCS3 ENSG00000129128 UTR3 Human protein_coding chr4:177252884 chr4:177252897 . . 0 34 hm5C_associated_SNPs_5022 0 0 0 0 0 Ribosome 1 0.500231643921092 0.9917813539505 0.999536712157815 hm5C_site_7982 DeepMRMD:0.9917813539505;iRNA_m5C:0.999536712157815 7983 chr4 177252897 177252897 1 + G A rs192512068 177252890 + 177252870 177252910 41 GCTGGGATTACAGGCGCCCGCCACCACGTCCGGCTAATTTT GCTGGGATTACAGGCGCCCGCCACCACATCCGGCTAATTTT < 41bp 1 0.519924670520327 1 0.189823597669601 experiment 0.960150658959346 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPCS3 ENSG00000129128 UTR3 Human protein_coding chr4:177252890 chr4:177252897 . . 0 28 hm5C_associated_SNPs_5023 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7983 DeepMRMD:1;iRNA_m5C:0.999536712157815 7984 chr4 177252900 177252900 1 + C T rs113492235 177252884 + 177252864 177252904 41 GGAGTAGCTGGGATTACAGGCGCCCGCCACCACGTCCGGCT GGAGTAGCTGGGATTACAGGCGCCCGCCACCACGTCTGGCT < 41bp 1 0.684703574182494 1 0.456968069076538 experiment 0.630592851635012 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPCS3 ENSG00000129128 UTR3 Human protein_coding chr4:177252884 chr4:177252900 . . 0 37 hm5C_associated_SNPs_5024 0 0 0 0 0 Ribosome 1 0.500231643920912 1 0.999536712158175 hm5C_site_7984 DeepMRMD:1;iRNA_m5C:0.999536712158175 7985 chr4 177252900 177252900 1 + C T rs113492235 177252890 + 177252870 177252910 41 GCTGGGATTACAGGCGCCCGCCACCACGTCCGGCTAATTTT GCTGGGATTACAGGCGCCCGCCACCACGTCTGGCTAATTTT < 41bp 1 0.479669322452133 1 0.238616019487381 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPCS3 ENSG00000129128 UTR3 Human protein_coding chr4:177252890 chr4:177252900 . . 0 31 hm5C_associated_SNPs_5025 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_7985 DeepMRMD:1;iRNA_m5C:0.999536712157814 7986 chr4 178262679 178262679 1 + G A rs114671957 178262698 + 178262678 178262718 41 CGTCCTAATTGTGGTCAGTGCCACTGCAGAATAACTGTGTG CATCCTAATTGTGGTCAGTGCCACTGCAGAATAACTGTGTG < 41bp 1 0.18914778563661 1 0.282325953245163 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262698 chr4:178262679 nonsynonymous SNV 0.962 2 2 hm5C_associated_SNPs_5026 0 0 1 0 1 chromatin 1 0.500231645279388 1 0.999536709441225 hm5C_site_7986 DeepMRMD:1;iRNA_m5C:0.999536709441225 7987 chr4 178262683 178262683 1 + T C rs17676249 178262698 + 178262678 178262718 41 CGTCCTAATTGTGGTCAGTGCCACTGCAGAATAACTGTGTG CGTCCCAATTGTGGTCAGTGCCACTGCAGAATAACTGTGTG < 41bp 1 0.204619198882386 1 0.377485007047653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262698 chr4:178262683 synonymous SNV . 0 6 hm5C_associated_SNPs_5027 0 0 1 0 1 chromatin 1 0.500231643921274 1 0.999536712157451 hm5C_site_7987 DeepMRMD:1;iRNA_m5C:0.999536712157451 7988 chr4 183696192 183696192 1 + G A rs183374276 183696207 + 183696187 183696227 41 CCGACGGTTGCCAAAAGAAACATGACTTTGCCTGGCGAGAA CCGACAGTTGCCAAAAGAAACATGACTTTGCCTGGCGAGAA < 41bp 1 0.370515719659081 1 0.103491425514221 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183696207 chr4:183696192 synonymous SNV . 0 6 hm5C_associated_SNPs_5029 0 0 0 0 0 nucleus 1 0.500231643920902 1 0.999536712158195 hm5C_site_7988 DeepMRMD:1;iRNA_m5C:0.999536712158195 7989 chr4 187125524 187125524 1 + C G rs4997685 187125527 + 187125507 187125547 41 TACGCTGGCGTAAGAGGCGGCGGTGGAGGCGCTACGCTGGC TACGCTGGCGTAAGAGGGGGCGGTGGAGGCGCTACGCTGGC < 41bp 1 0.56068969762909 1 0.790239930152893 experiment 0.87862060474182 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CYP4V2 ENSG00000145476 intronic Human protein_coding chr4:187125527 chr4:187125524 . . 0 18 hm5C_associated_SNPs_5030 0 0 0 0 1 Nucleus 1 0.500231643922598 0.419520139694214 0.999536712154803 hm5C_site_7989 DeepMRMD:0.419520139694214;iRNA_m5C:0.999536712154803 7990 chr4 187125524 187125524 1 + C G rs4997685 187125536 + 187125516 187125556 41 GTAAGAGGCGGCGGTGGAGGCGCTACGCTGGCGTAAGAGGT GTAAGAGGGGGCGGTGGAGGCGCTACGCTGGCGTAAGAGGT < 41bp 1 0.595827401883388 1 0.774786710739136 experiment 0.808345196233225 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CYP4V2 ENSG00000145476 intronic Human protein_coding chr4:187125536 chr4:187125524 . . 0 9 hm5C_associated_SNPs_5031 0 0 0 0 1 Nucleus 1 0.500231643921092 0.450426578521728 0.999536712157815 hm5C_site_7990 DeepMRMD:0.450426578521728;iRNA_m5C:0.999536712157815 7991 chr4 187125535 187125535 1 + G A rs4997684 187125527 + 187125507 187125547 41 TACGCTGGCGTAAGAGGCGGCGGTGGAGGCGCTACGCTGGC TACGCTGGCGTAAGAGGCGGCGGTGGAGACGCTACGCTGGC < 41bp 1 0.500367129069755 1 0.815284907817841 experiment 0.99926574186049 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CYP4V2 ENSG00000145476 intronic Human protein_coding chr4:187125527 chr4:187125535 . . 0 29 hm5C_associated_SNPs_5032 0 0 0 0 1 Nucleus 1 0.500231643484861 0.369430184364318 0.999536713030277 hm5C_site_7991 DeepMRMD:0.369430184364318;iRNA_m5C:0.999536713030277 7992 chr4 187125535 187125535 1 + G A rs4997684 187125536 + 187125516 187125556 41 GTAAGAGGCGGCGGTGGAGGCGCTACGCTGGCGTAAGAGGT GTAAGAGGCGGCGGTGGAGACGCTACGCTGGCGTAAGAGGT < 41bp 1 0.555774631581749 1 0.833675444126129 experiment 0.888450736836502 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CYP4V2 ENSG00000145476 intronic Human protein_coding chr4:187125536 chr4:187125535 . . 0 20 hm5C_associated_SNPs_5033 0 0 0 0 1 Nucleus 1 0.500231643954484 0.332649111747742 0.999536712091032 hm5C_site_7992 DeepMRMD:0.332649111747742;iRNA_m5C:0.999536712091032 7993 chr4 187125556 187125556 1 + T C rs57994834 187125536 + 187125516 187125556 41 GTAAGAGGCGGCGGTGGAGGCGCTACGCTGGCGTAAGAGGT GTAAGAGGCGGCGGTGGAGGCGCTACGCTGGCGTAAGAGGC < 41bp 1 0.592123029149942 1 0.765333652496338 experiment 0.815753941700116 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CYP4V2 ENSG00000145476 intronic Human protein_coding chr4:187125536 chr4:187125556 . . 0 41 hm5C_associated_SNPs_5034 0 0 0 0 1 Nucleus 1 0.500231643921092 0.469332695007324 0.999536712157815 hm5C_site_7993 DeepMRMD:0.469332695007324;iRNA_m5C:0.999536712157815 7994 chr5 223669 223669 1 + A G rs144599870 223682 + 223662 223702 41 ATCTGCTAAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGT ATCTGCTGAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGT < 41bp 1 0.201893477144209 1 0.0791900455951691 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:223682 chr5:223669 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_5035 4 0 1 0 2 Nucleus 1 0.50023164679595 1 0.9995367064081 hm5C_site_7994 DeepMRMD:1;iRNA_m5C:0.9995367064081 Mitochondrial complex II deficiency Mitochondrial complex II deficiency 7995 chr5 223679 223679 1 + A G rs80207011 223682 + 223662 223702 41 ATCTGCTAAAGTTTCAGATTCCGTAAGTTCATGCTTTTTGT ATCTGCTAAAGTTTCAGGTTCCGTAAGTTCATGCTTTTTGT < 41bp 1 0.127234043864254 1 0.0692955255508423 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:223682 chr5:223679 nonsynonymous SNV 0.969 0 18 hm5C_associated_SNPs_5036 4 0 1 0 2 Nucleus 1 0.500231669283671 1 0.999536661432659 hm5C_site_7995 DeepMRMD:1;iRNA_m5C:0.999536661432659 Hereditary cancer-predisposing syndrome Hereditary cancer-predisposing syndrome 7996 chr5 435256 435256 1 + C T rs78235811 435237 + 435217 435257 41 GGAAAGTGATCATGGCTGGACAGCTTCATGCCCCAGAGGCA GGAAAGTGATCATGGCTGGACAGCTTCATGCCCCAGAGGTA < 41bp 1 0.200091454367635 1 0.209085375070572 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AHRR ENSG00000063438 UTR3 Human protein_coding chr5:435237 chr5:435256 . . 0 40 hm5C_associated_SNPs_5037 0 0 0 0 0 chromatin 1 0.50023164391225 1 0.9995367121755 hm5C_site_7996 DeepMRMD:1;iRNA_m5C:0.9995367121755 7997 chr5 467102 467102 1 + C T rs147989056 467121 + 467101 467141 41 ACGTGCTCCTTTTAGCTGCACGGCCTGTCTTTAGGTGCCAG ATGTGCTCCTTTTAGCTGCACGGCCTGTCTTTAGGTGCCAG < 41bp 1 0.452682299486066 1 0.112793833017349 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXOC3 ENSG00000180104 UTR3 Human protein_coding chr5:467121 chr5:467102 . . 0 2 hm5C_associated_SNPs_5038 0 0 1 0 0 Ribosome 1 0.500231643921115 1 0.999536712157769 hm5C_site_7997 DeepMRMD:1;iRNA_m5C:0.999536712157769 7998 chr5 917878 917878 1 + A G rs14389 917877 + 917857 917897 41 CCAGGGAAACACATGCTGGACATCCCTTGTAACCCGGTATG CCAGGGAAACACATGCTGGACGTCCCTTGTAACCCGGTATG < 41bp 1 0.362124162255749 1 0.0444660186767578 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP13 ENSG00000071539 UTR3 Human protein_coding chr5:917877 chr5:917878 . . 0 22 hm5C_associated_SNPs_5039 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_7998 DeepMRMD:1;iRNA_m5C:0.999536712157815 7999 chr5 1036435 1036435 1 + G A rs73026757 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACACAGAGCGCAGAAACCACTACCTGGACCTCGCCGG < 41bp 1 0.15889929879173 1 0.0944141149520874 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036435 synonymous SNV . 0 9 hm5C_associated_SNPs_5040 0 0 0 0 2 exosome 1 0.500231648312961 1 0.999536703374078 hm5C_site_7999 DeepMRMD:1;iRNA_m5C:0.999536703374078 8000 chr5 1036435 1036435 1 + G A rs73026757 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACACAGAGCGCAGAAACCACTACCTGGACCTCGCCGGG < 41bp 1 0.537917800840682 1 0.21526575088501 experiment 0.924164398318637 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036435 synonymous SNV . 0 8 hm5C_associated_SNPs_5041 0 0 0 0 2 exosome 1 0.500231656313438 1 0.999536687373124 hm5C_site_8000 DeepMRMD:1;iRNA_m5C:0.999536687373124 8001 chr5 5303774 5303774 1 + C G rs73738806 5303760 + 5303740 5303780 41 CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCGACGCTGTC CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCGAGGCTGTC < 41bp 1 0.466255022784897 1 0.31038561463356 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303760 chr5:5303774 nonsynonymous SNV 0.000 0 35 hm5C_associated_SNPs_5042 0 0 0 0 1 exosome 1 0.500231643451454 1 0.999536713097091 hm5C_site_8001 DeepMRMD:1;iRNA_m5C:0.999536713097091 8002 chr5 5457693 5457693 1 + G A rs76783275 5457687 + 5457667 5457707 41 AGGTTTTAGTACAAAGTCATCGTGACGGTGGTAGTACTGAA AGGTTTTAGTACAAAGTCATCGTGACAGTGGTAGTACTGAA < 41bp 1 0.390011913908121 1 0.335236787796021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ICE1 ENSG00000164151 CDS Human protein_coding chr5:5457687 chr5:5457693 nonsynonymous SNV 0.000 0 27 hm5C_associated_SNPs_5043 0 0 1 0 0 Nucleus 1 0.500231632631787 1 0.999536734736425 hm5C_site_8002 DeepMRMD:1;iRNA_m5C:0.999536734736425 8003 chr5 6651960 6651960 1 + T C rs573358282 6651967 + 6651947 6651987 41 TTCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGG TTCCTAAGGTGCTCAATTTACCCATTTCTGATGCGAGGAGG < 41bp 1 0.249418782813529 1 0.0972403883934021 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651967 chr5:6651960 nonsynonymous SNV 0.660 4 14 hm5C_associated_SNPs_5044 0 0 0 0 1 Ribosome 1 0.500231644132164 1 0.999536711735672 hm5C_site_8003 DeepMRMD:1;iRNA_m5C:0.999536711735672 8004 chr5 6651960 6651960 1 + T C rs573358282 6651968 + 6651948 6651988 41 TCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGA TCCTAAGGTGCTCAATTTACCCATTTCTGATGCGAGGAGGA < 41bp 1 0.0495116059560864 1 0.207297444343567 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651968 chr5:6651960 nonsynonymous SNV 0.660 4 13 hm5C_associated_SNPs_5045 0 0 0 0 1 Ribosome 1 0.500231643916552 1 0.999536712166896 hm5C_site_8004 DeepMRMD:1;iRNA_m5C:0.999536712166896 8005 chr5 6651960 6651960 1 + T C rs573358282 6651969 + 6651949 6651989 41 CCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGAA CCTAAGGTGCTCAATTTACCCATTTCTGATGCGAGGAGGAA < 41bp 1 0.0666228898476289 1 0.101791441440582 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651969 chr5:6651960 nonsynonymous SNV 0.660 4 12 hm5C_associated_SNPs_5046 0 0 0 0 1 Ribosome 1 0.500231643922105 1 0.99953671215579 hm5C_site_8005 DeepMRMD:1;iRNA_m5C:0.99953671215579 8006 chr5 6651970 6651970 1 + A G rs3822430 6651967 + 6651947 6651987 41 TTCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGG TTCCTAAGGTGCTTAATTTACCCGTTTCTGATGCGAGGAGG < 41bp 1 0.463189195032419 1 0.0854174792766571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651967 chr5:6651970 synonymous SNV . 0 24 hm5C_associated_SNPs_5047 0 0 0 0 1 Ribosome 1 0.500231643921089 1 0.999536712157821 hm5C_site_8006 DeepMRMD:1;iRNA_m5C:0.999536712157821 8007 chr5 6651970 6651970 1 + A G rs3822430 6651968 + 6651948 6651988 41 TCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGA TCCTAAGGTGCTTAATTTACCCGTTTCTGATGCGAGGAGGA < 41bp 1 0.0774797683823072 1 0.121767580509186 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651968 chr5:6651970 synonymous SNV . 0 23 hm5C_associated_SNPs_5048 0 0 0 0 1 Ribosome 1 0.500231643975206 1 0.999536712049587 hm5C_site_8007 DeepMRMD:1;iRNA_m5C:0.999536712049587 8008 chr5 6651970 6651970 1 + A G rs3822430 6651969 + 6651949 6651989 41 CCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGAA CCTAAGGTGCTTAATTTACCCGTTTCTGATGCGAGGAGGAA < 41bp 1 0.0675613105192373 1 0.0495799481868744 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651969 chr5:6651970 synonymous SNV . 0 22 hm5C_associated_SNPs_5049 0 0 0 0 1 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_8008 DeepMRMD:1;iRNA_m5C:0.999536712157808 8009 chr5 6652009 6652009 1 + G A rs8192186 6652008 + 6651988 6652028 41 AAAGCCTATGCCACTGTTGGCGTGTACAATGGCGATTATGT AAAGCCTATGCCACTGTTGGCATGTACAATGGCGATTATGT < 41bp 1 0.115355323453934 1 0.233816206455231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6652008 chr5:6652009 synonymous SNV . 0 22 hm5C_associated_SNPs_5050 0 0 0 0 1 Ribosome 1 0.500231286572294 1 0.999537426855413 hm5C_site_8009 DeepMRMD:1;iRNA_m5C:0.999537426855413 8010 chr5 6746335 6746335 1 + A G rs529673619 6746347 + 6746327 6746367 41 TTGCATCCAAGAATTGATGCCCGGAGAGCTGATGAAAACCT TTGCATCCGAGAATTGATGCCCGGAGAGCTGATGAAAACCT < 41bp 1 0.482669912636928 1 0.39286869764328 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6746347 chr5:6746335 synonymous SNV . 0 9 hm5C_associated_SNPs_5051 0 0 1 0 1 Nucleus 1 0.50050218056617 1 0.998995638867659 hm5C_site_8010 DeepMRMD:1;iRNA_m5C:0.998995638867659 8011 chr5 6755444 6755444 1 + G A rs28381436 6755432 + 6755412 6755452 41 GTCAAAGCAGCAGAGGAGATCAAACCCCGTTCGTGTGTCTT GTCAAAGCAGCAGAGGAGATCAAACCCCGTTCATGTGTCTT < 41bp 1 0.194974955747471 1 0.345440566539764 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PAPD7 ENSG00000112941 UTR3 Human protein_coding chr5:6755432 chr5:6755444 . . 0 33 hm5C_associated_SNPs_5052 0 0 1 0 0 Nucleus 1 0.500231643921099 1 0.999536712157803 hm5C_site_8011 DeepMRMD:1;iRNA_m5C:0.999536712157803 8012 chr5 6756660 6756660 1 + G A rs560636604 6756649 + 6756629 6756669 41 TAAAATGTCTGCGGTCTGCCCTTTTGAAGCAGGACTGGCTC TAAAATGTCTGCGGTCTGCCCTTTTGAAGCAAGACTGGCTC < 41bp 1 0.245398419696499 1 0.0783184766769409 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPD7 ENSG00000112941 UTR3 Human protein_coding chr5:6756649 chr5:6756660 . . 0 32 hm5C_associated_SNPs_5053 0 0 1 0 0 Nucleus 1 0.500231643921089 1 0.999536712157823 hm5C_site_8012 DeepMRMD:1;iRNA_m5C:0.999536712157823 8013 chr5 7878179 7878179 1 + C T rs1532268 7878185 + 7878165 7878205 41 ATCACCTGCATCCTCGAGGACAGACCTTGTGAAGTCAGAGC ATCACCTGCATCCTTGAGGACAGACCTTGTGAAGTCAGAGC < 41bp 1 0.294106688942909 1 0.118183344602585 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7878185 chr5:7878179 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_5054 3 0 1 0 0 Nucleus 1 0.50023164392759 1 0.999536712144819 hm5C_site_8013 DeepMRMD:1;iRNA_m5C:0.999536712144819 not specified not specified 8014 chr5 7878179 7878179 1 + C T rs1532268 7878190 + 7878170 7878210 41 CTGCATCCTCGAGGACAGACCTTGTGAAGTCAGAGCTGCTA CTGCATCCTTGAGGACAGACCTTGTGAAGTCAGAGCTGCTA < 41bp 1 0.527960337593946 1 0.0478578209877014 experiment 0.944079324812107 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7878190 chr5:7878179 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_5055 3 0 1 0 0 Nucleus 1 0.500205163915329 1 0.999589672169342 hm5C_site_8014 DeepMRMD:1;iRNA_m5C:0.999589672169342 not specified not specified 8015 chr5 7878192 7878192 1 + T C rs161870 7878185 + 7878165 7878205 41 ATCACCTGCATCCTCGAGGACAGACCTTGTGAAGTCAGAGC ATCACCTGCATCCTCGAGGACAGACCTCGTGAAGTCAGAGC < 41bp 1 0.31597843021336 1 0.215250194072723 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7878185 chr5:7878192 synonymous SNV . 0 28 hm5C_associated_SNPs_5056 2 0 1 0 0 Nucleus 1 0.500231643327521 1 0.999536713344957 hm5C_site_8015 DeepMRMD:1;iRNA_m5C:0.999536713344957 not specified not specified 8016 chr5 7885868 7885868 1 + A G rs199762141 7885861 + 7885841 7885881 41 GATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGT GATGCCTTCAGCGTGATCTGCCCTAACGGTGATTCTGAGGT < 41bp 1 0.273177328661213 1 0.0423588454723358 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885861 chr5:7885868 nonsynonymous SNV 0.990 1 28 hm5C_associated_SNPs_5059 0 0 1 0 1 Nucleus 1 0.500231643919056 1 0.999536712161888 hm5C_site_8016 DeepMRMD:1;iRNA_m5C:0.999536712161888 8017 chr5 7885868 7885868 1 + A G rs199762141 7885862 + 7885842 7885882 41 ATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTA ATGCCTTCAGCGTGATCTGCCCTAACGGTGATTCTGAGGTA < 41bp 1 0.22388191637724 1 0.0582344830036163 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885862 chr5:7885868 nonsynonymous SNV 0.990 1 27 hm5C_associated_SNPs_5060 0 0 1 0 1 Nucleus 1 0.500231643921228 1 0.999536712157544 hm5C_site_8017 DeepMRMD:1;iRNA_m5C:0.999536712157544 8018 chr5 7885868 7885868 1 + A G rs199762141 7885863 + 7885843 7885883 41 TGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTAC TGCCTTCAGCGTGATCTGCCCTAACGGTGATTCTGAGGTAC < 41bp 1 0.362801821652662 1 0.0843493044376373 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885863 chr5:7885868 nonsynonymous SNV 0.990 1 26 hm5C_associated_SNPs_5061 0 0 1 0 1 Nucleus 1 0.500231644495565 1 0.999536711008869 hm5C_site_8018 DeepMRMD:1;iRNA_m5C:0.999536711008869 8019 chr5 7889304 7889304 1 + C T rs2287780 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGGCAGCCGATTATAGCTGCTTTGTAC < 41bp 1 0.225766639492119 1 0.274121224880219 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889304 nonsynonymous SNV 0.029 3 32 hm5C_associated_SNPs_5062 2 0 1 0 2 Nucleus 1 0.500231643931948 1 0.999536712136104 hm5C_site_8019 DeepMRMD:1;iRNA_m5C:0.999536712136104 not specified not specified 8020 chr5 10387149 10387149 1 + A G rs141255096 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCCGTGAGCTCACTGCTGACGCTGCCATTAGATATG < 41bp 1 0.244900847497189 1 0.201313078403473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387149 synonymous SNV . 0 20 hm5C_associated_SNPs_5064 0 0 1 0 2 Nucleus 1 0.500231643882529 1 0.999536712234942 hm5C_site_8020 DeepMRMD:1;iRNA_m5C:0.999536712234942 8021 chr5 10387161 10387161 1 + A G rs116788481 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCCGTGAGCTCACTACTGACGCTGCCGTTAGATATG < 41bp 1 0.267860563345976 1 0.126073837280273 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387161 synonymous SNV . 0 32 hm5C_associated_SNPs_5065 0 0 1 0 2 Nucleus 1 0.50023164606716 1 0.999536707865679 hm5C_site_8021 DeepMRMD:1;iRNA_m5C:0.999536707865679 8022 chr5 10415633 10415633 1 + C T rs182494860 10415639 + 10415619 10415659 41 AATGTCGTTTTGGACGGGGACTGCCAAAATCCATGAGCTCT AATGTCGTTTTGGATGGGGACTGCCAAAATCCATGAGCTCT < 41bp 1 0.217237135751908 1 0.25016313791275 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10415639 chr5:10415633 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_5066 0 0 1 0 1 Nucleus 1 0.50023164501417 1 0.999536709971659 hm5C_site_8022 DeepMRMD:1;iRNA_m5C:0.999536709971659 8023 chr5 10417411 10417411 1 + G A rs541401299 10417426 + 10417406 10417446 41 GTGCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCT GTGCTATTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCT < 41bp 1 0.156095133399883 1 0.11194971203804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10417426 chr5:10417411 synonymous SNV . 0 6 hm5C_associated_SNPs_5067 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8023 DeepMRMD:1;iRNA_m5C:0.999536712157815 8024 chr5 10417411 10417411 1 + G A rs541401299 10417428 + 10417408 10417448 41 GCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCTGT GCTATTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCTGT < 41bp 1 0.246887226673128 1 0.0339217782020569 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10417428 chr5:10417411 synonymous SNV . 0 4 hm5C_associated_SNPs_5068 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8024 DeepMRMD:1;iRNA_m5C:0.999536712157815 8025 chr5 14487903 14487903 1 + C T rs533386148 14487885 + 14487865 14487905 41 GCCTCCCCCTGGCGCGGCCCCCGAGGCCGGCCCCAGCGCGC GCCTCCCCCTGGCGCGGCCCCCGAGGCCGGCCCCAGCGTGC < 41bp 1 0.464055979714468 1 0.74412739276886 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14487885 chr5:14487903 nonsynonymous SNV 0.007 0 39 hm5C_associated_SNPs_5069 0 0 0 0 0 Nucleus 1 0.500231643920492 0.51174521446228 0.999536712159017 hm5C_site_8025 DeepMRMD:0.51174521446228;iRNA_m5C:0.999536712159017 8026 chr5 14487903 14487903 1 + C T rs533386148 14487886 + 14487866 14487906 41 CCTCCCCCTGGCGCGGCCCCCGAGGCCGGCCCCAGCGCGCC CCTCCCCCTGGCGCGGCCCCCGAGGCCGGCCCCAGCGTGCC < 41bp 1 0.663192778931055 1 0.853910267353058 experiment 0.673614442137889 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14487886 chr5:14487903 nonsynonymous SNV 0.007 0 38 hm5C_associated_SNPs_5070 0 0 0 0 0 Nucleus 1 0.500231643921724 0.292179465293884 0.999536712156553 hm5C_site_8026 DeepMRMD:0.292179465293884;iRNA_m5C:0.999536712156553 8027 chr5 14487903 14487903 1 + C T rs533386148 14487919 + 14487899 14487939 41 AGCGCGCCCAGCAGGCGGCCCCCCGGCGCGGACGCCGAGGG AGCGTGCCCAGCAGGCGGCCCCCCGGCGCGGACGCCGAGGG < 41bp 1 0.214996345110671 1 0.300688594579697 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14487919 chr5:14487903 nonsynonymous SNV 0.007 0 5 hm5C_associated_SNPs_5071 0 0 0 0 0 Nucleus 1 0.500231643945164 1 0.999536712109672 hm5C_site_8027 DeepMRMD:1;iRNA_m5C:0.999536712109672 8028 chr5 14487903 14487903 1 + C T rs533386148 14487920 + 14487900 14487940 41 GCGCGCCCAGCAGGCGGCCCCCCGGCGCGGACGCCGAGGGG GCGTGCCCAGCAGGCGGCCCCCCGGCGCGGACGCCGAGGGG < 41bp 1 0.530944413240117 1 0.56681615114212 experiment 0.938111173519766 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14487920 chr5:14487903 nonsynonymous SNV 0.007 0 4 hm5C_associated_SNPs_5072 0 0 0 0 0 Nucleus 1 0.500231642483478 0.86636769771576 0.999536715033044 hm5C_site_8028 DeepMRMD:0.86636769771576;iRNA_m5C:0.999536715033044 8029 chr5 14487903 14487903 1 + C T rs533386148 14487921 + 14487901 14487941 41 CGCGCCCAGCAGGCGGCCCCCCGGCGCGGACGCCGAGGGGT CGTGCCCAGCAGGCGGCCCCCCGGCGCGGACGCCGAGGGGT < 41bp 1 0.435739726844858 1 0.645585954189301 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14487921 chr5:14487903 nonsynonymous SNV 0.007 0 3 hm5C_associated_SNPs_5073 0 0 0 0 0 Nucleus 1 0.500231642561319 0.708828091621398 0.999536714877361 hm5C_site_8029 DeepMRMD:0.708828091621398;iRNA_m5C:0.999536714877361 8030 chr5 14487903 14487903 1 + C T rs533386148 14487922 + 14487902 14487942 41 GCGCCCAGCAGGCGGCCCCCCGGCGCGGACGCCGAGGGGTC GTGCCCAGCAGGCGGCCCCCCGGCGCGGACGCCGAGGGGTC < 41bp 1 0.592040067529427 1 0.687073349952698 experiment 0.815919864941146 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14487922 chr5:14487903 nonsynonymous SNV 0.007 0 2 hm5C_associated_SNPs_5074 0 0 0 0 0 Nucleus 1 0.500231640521956 0.625853300094604 0.999536718956089 hm5C_site_8030 DeepMRMD:0.625853300094604;iRNA_m5C:0.999536718956089 8031 chr5 14498727 14498727 1 + G A rs26107 14498746 + 14498726 14498766 41 CGTCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG CATCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG < 41bp 1 0.396297213766268 1 0.20679646730423 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14498746 chr5:14498727 synonymous SNV . 0 2 hm5C_associated_SNPs_5075 0 0 1 0 2 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_8031 DeepMRMD:1;iRNA_m5C:0.999536712157818 8032 chr5 14509307 14509307 1 + G A rs545046313 14509308 + 14509288 14509328 41 CCGTCAATCAGATTGTGGAGCAGTACACAGTCAGATGAAAA CCGTCAATCAGATTGTGGAACAGTACACAGTCAGATGAAAA < 41bp 1 0.208821925751382 1 0.24925896525383 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIO ENSG00000038382 UTR3 Human protein_coding chr5:14509308 chr5:14509307 . . 0 20 hm5C_associated_SNPs_5076 0 0 1 0 0 Nucleus 1 0.500231643921136 1 0.999536712157728 hm5C_site_8032 DeepMRMD:1;iRNA_m5C:0.999536712157728 8033 chr5 14664821 14664821 1 + G A rs250435 14664822 + 14664802 14664842 41 GCGCGGAAGCGCTCTGCGGGCCCTCGGAAACCGCCCCGGCG GCGCGGAAGCGCTCTGCGGACCCTCGGAAACCGCCCCGGCG < 41bp 1 0.287754090876721 1 0.112737596035004 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTULIN ENSG00000154124 UTR5 Human protein_coding chr5:14664822 chr5:14664821 . . 0 20 hm5C_associated_SNPs_5077 0 0 1 0 0 Ribosome 1 0.500231659248243 1 0.999536681503514 hm5C_site_8033 DeepMRMD:1;iRNA_m5C:0.999536681503514 8034 chr5 14664821 14664821 1 + G A rs250435 14664823 + 14664803 14664843 41 CGCGGAAGCGCTCTGCGGGCCCTCGGAAACCGCCCCGGCGG CGCGGAAGCGCTCTGCGGACCCTCGGAAACCGCCCCGGCGG < 41bp 1 0.460752508142792 1 0.189178466796875 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTULIN ENSG00000154124 UTR5 Human protein_coding chr5:14664823 chr5:14664821 . . 0 19 hm5C_associated_SNPs_5078 0 0 1 0 0 Ribosome 1 0.500231644564481 1 0.999536710871037 hm5C_site_8034 DeepMRMD:1;iRNA_m5C:0.999536710871037 8035 chr5 14664833 14664833 1 + C G rs181297196 14664822 + 14664802 14664842 41 GCGCGGAAGCGCTCTGCGGGCCCTCGGAAACCGCCCCGGCG GCGCGGAAGCGCTCTGCGGGCCCTCGGAAACGGCCCCGGCG < 41bp 1 0.283371414713013 1 0.173252373933792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTULIN ENSG00000154124 UTR5 Human protein_coding chr5:14664822 chr5:14664833 . . 0 32 hm5C_associated_SNPs_5079 0 0 1 0 0 Ribosome 1 0.500231643922446 1 0.999536712155107 hm5C_site_8035 DeepMRMD:1;iRNA_m5C:0.999536712155107 8036 chr5 14664833 14664833 1 + C G rs181297196 14664823 + 14664803 14664843 41 CGCGGAAGCGCTCTGCGGGCCCTCGGAAACCGCCCCGGCGG CGCGGAAGCGCTCTGCGGGCCCTCGGAAACGGCCCCGGCGG < 41bp 1 0.380624000723188 1 0.215043604373932 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTULIN ENSG00000154124 UTR5 Human protein_coding chr5:14664823 chr5:14664833 . . 0 31 hm5C_associated_SNPs_5080 0 0 1 0 0 Ribosome 1 0.500231643293328 1 0.999536713413344 hm5C_site_8036 DeepMRMD:1;iRNA_m5C:0.999536713413344 8037 chr5 14664838 14664838 1 + C G rs560512097 14664822 + 14664802 14664842 41 GCGCGGAAGCGCTCTGCGGGCCCTCGGAAACCGCCCCGGCG GCGCGGAAGCGCTCTGCGGGCCCTCGGAAACCGCCCGGGCG < 41bp 1 0.280923132378876 1 0.130129665136337 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTULIN ENSG00000154124 UTR5 Human protein_coding chr5:14664822 chr5:14664838 . . 0 37 hm5C_associated_SNPs_5081 0 0 1 0 0 Ribosome 1 0.500231649472709 1 0.999536701054581 hm5C_site_8037 DeepMRMD:1;iRNA_m5C:0.999536701054581 8038 chr5 14664838 14664838 1 + C G rs560512097 14664823 + 14664803 14664843 41 CGCGGAAGCGCTCTGCGGGCCCTCGGAAACCGCCCCGGCGG CGCGGAAGCGCTCTGCGGGCCCTCGGAAACCGCCCGGGCGG < 41bp 1 0.36381087674558 1 0.194196671247482 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTULIN ENSG00000154124 UTR5 Human protein_coding chr5:14664823 chr5:14664838 . . 0 36 hm5C_associated_SNPs_5082 0 0 1 0 0 Ribosome 1 0.500231644028135 1 0.99953671194373 hm5C_site_8038 DeepMRMD:1;iRNA_m5C:0.99953671194373 8039 chr5 14697846 14697846 1 + A G rs186113088 14697842 + 14697822 14697862 41 GGAGGAGGACACTGTGTTTTCTCAATTAATCTCATTGATTT GGAGGAGGACACTGTGTTTTCTCAGTTAATCTCATTGATTT < 41bp 1 0.565311045440879 1 0.448173761367798 experiment 0.869377909118243 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OTULIN ENSG00000154124 UTR3 Human protein_coding chr5:14697842 chr5:14697846 . . 0 25 hm5C_associated_SNPs_5083 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_8039 DeepMRMD:1;iRNA_m5C:0.999536712157815 8040 chr5 14697849 14697849 1 + A G rs6886163 14697842 + 14697822 14697862 41 GGAGGAGGACACTGTGTTTTCTCAATTAATCTCATTGATTT GGAGGAGGACACTGTGTTTTCTCAATTGATCTCATTGATTT < 41bp 1 0.677974251554562 1 0.893683731555939 experiment 0.644051496890877 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OTULIN ENSG00000154124 UTR3 Human protein_coding chr5:14697842 chr5:14697849 . . 0 28 hm5C_associated_SNPs_5084 0 0 1 0 0 Ribosome 1 0.500231643921092 0.212632536888122 0.999536712157815 hm5C_site_8040 DeepMRMD:0.212632536888122;iRNA_m5C:0.999536712157815 8041 chr5 14697852 14697852 1 + C G rs115684402 14697842 + 14697822 14697862 41 GGAGGAGGACACTGTGTTTTCTCAATTAATCTCATTGATTT GGAGGAGGACACTGTGTTTTCTCAATTAATGTCATTGATTT < 41bp 1 0.64991647681023 1 0.941999614238739 experiment 0.70016704637954 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OTULIN ENSG00000154124 UTR3 Human protein_coding chr5:14697842 chr5:14697852 . . 0 31 hm5C_associated_SNPs_5085 0 0 1 0 0 Ribosome 1 0.500231643921092 0.116000771522522 0.999536712157815 hm5C_site_8041 DeepMRMD:0.116000771522522;iRNA_m5C:0.999536712157815 8042 chr5 14698453 14698453 1 + C T rs3747697 14698463 + 14698443 14698483 41 TAAGATGTTCCGCATGTGTCCAAAATTTCGCCTGCTCTGAA TAAGATGTTCTGCATGTGTCCAAAATTTCGCCTGCTCTGAA < 41bp 1 0.566592991609904 1 0.39494526386261 experiment 0.866814016780192 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTULIN ENSG00000154124 UTR3 Human protein_coding chr5:14698463 chr5:14698453 . . 0 11 hm5C_associated_SNPs_5086 0 0 1 0 0 Ribosome 1 0.500209277760293 1 0.999581444479413 hm5C_site_8042 DeepMRMD:1;iRNA_m5C:0.999581444479413 8043 chr5 14698472 14698472 1 + G A rs60501770 14698463 + 14698443 14698483 41 TAAGATGTTCCGCATGTGTCCAAAATTTCGCCTGCTCTGAA TAAGATGTTCCGCATGTGTCCAAAATTTCACCTGCTCTGAA < 41bp 1 0.578220106130297 1 0.196766793727875 experiment 0.843559787739407 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTULIN ENSG00000154124 UTR3 Human protein_coding chr5:14698463 chr5:14698472 . . 0 30 hm5C_associated_SNPs_5087 0 0 1 0 0 Ribosome 1 0.500231265986433 1 0.999537468027135 hm5C_site_8043 DeepMRMD:1;iRNA_m5C:0.999537468027135 8044 chr5 15936995 15936995 1 + C T rs142704418 15937013 + 15936993 15937033 41 CACGGTGTGGAGTACCTCGCCAAGAACTGCACCAAACTCAA CATGGTGTGGAGTACCTCGCCAAGAACTGCACCAAACTCAA < 41bp 1 0.621763916187445 1 0.461577862501144 experiment 0.75647216762511 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXL7 ENSG00000183580 CDS Human protein_coding chr5:15937013 chr5:15936995 synonymous SNV . 0 3 hm5C_associated_SNPs_5088 0 0 0 0 0 exosome 1 0.500231644034267 1 0.999536711931467 hm5C_site_8044 DeepMRMD:1;iRNA_m5C:0.999536711931467 8045 chr5 15937010 15937010 1 + C T rs61748187 15937013 + 15936993 15937033 41 CACGGTGTGGAGTACCTCGCCAAGAACTGCACCAAACTCAA CACGGTGTGGAGTACCTTGCCAAGAACTGCACCAAACTCAA < 41bp 1 0.682126125594184 1 0.549605846405029 experiment 0.635747748811632 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXL7 ENSG00000183580 CDS Human protein_coding chr5:15937013 chr5:15937010 synonymous SNV . 0 18 hm5C_associated_SNPs_5089 0 0 0 0 0 exosome 1 0.500231643921093 0.900788307189942 0.999536712157815 hm5C_site_8045 DeepMRMD:0.900788307189942;iRNA_m5C:0.999536712157815 8046 chr5 17275364 17275364 1 + T C rs73756114 17275370 + 17275350 17275390 41 AAGAAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAA AAGAAGGGCTACAACGTGAACGACGAGAAAGCCAAGGAGAA < 41bp 1 0.565068357713128 1 0.281786471605301 experiment 0.869863284573745 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275370 chr5:17275364 synonymous SNV . 0 15 hm5C_associated_SNPs_5090 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8046 DeepMRMD:1;iRNA_m5C:0.999536712157815 8047 chr5 17275364 17275364 1 + T C rs73756114 17275381 + 17275361 17275401 41 CAATGTGAACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG CAACGTGAACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG < 41bp 1 0.391878789732413 1 0.413183331489563 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275381 chr5:17275364 synonymous SNV . 0 4 hm5C_associated_SNPs_5092 0 0 1 0 1 Nucleus 1 0.500231643955007 1 0.999536712089987 hm5C_site_8047 DeepMRMD:1;iRNA_m5C:0.999536712089987 8048 chr5 17275552 17275552 1 + C T rs3733748 17275572 + 17275552 17275592 41 CGGCTGCCAAGGAGGAGGCCCCGAAGGCGGAGCCCGAGAAG TGGCTGCCAAGGAGGAGGCCCCGAAGGCGGAGCCCGAGAAG < 41bp 1 0.654850948337467 1 0.333418726921082 experiment 0.690298103325066 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275572 chr5:17275552 nonsynonymous SNV 0.432 1 1 hm5C_associated_SNPs_5094 0 0 1 0 0 Nucleus 1 0.50023164392109 1 0.99953671215782 hm5C_site_8048 DeepMRMD:1;iRNA_m5C:0.99953671215782 8049 chr5 29172338 29172338 1 + C A rs545932118 29172348 + 29172328 29172368 41 CGGTGGCGGGCGCCTATAGTCCCAGCTACCCGGGAGGCTGA CGGTGGCGGGAGCCTATAGTCCCAGCTACCCGGGAGGCTGA < 41bp 1 0.448825695186452 1 0.573650717735291 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LINC02109 ENSG00000259786 ncRNA_exonic Human lincRNA chr5:29172348 chr5:29172338 . . 0 11 hm5C_associated_SNPs_5096 0 0 0 0 0 unknown 1 0.500231643921092 0.852698564529418 0.999536712157817 hm5C_site_8049 DeepMRMD:0.852698564529418;iRNA_m5C:0.999536712157817 8050 chr5 32790918 32790918 1 + G C rs73073697 32790915 + 32790895 32790935 41 TGGAAGTGTTTCAATGGGAGCCAGATCTCATGAGTAAAAAT TGGAAGTGTTTCAATGGGAGCCACATCTCATGAGTAAAAAT < 41bp 1 0.197888983437365 1 0.0853051543235779 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NPR3 ENSG00000113389;ENSG00000181495 UTR3 Human other chr5:32790915 chr5:32790918 . . 0 24 hm5C_associated_SNPs_5097 0 0 0 1 0 nucleoplasm 1 0.500238677351059 1 0.999522645297882 hm5C_site_8050 DeepMRMD:1;iRNA_m5C:0.999522645297882 8051 chr5 32790920 32790920 1 + T C rs147567674 32790915 + 32790895 32790935 41 TGGAAGTGTTTCAATGGGAGCCAGATCTCATGAGTAAAAAT TGGAAGTGTTTCAATGGGAGCCAGACCTCATGAGTAAAAAT < 41bp 1 0.26291635883113 1 0.116507112979889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NPR3 ENSG00000113389;ENSG00000181495 UTR3 Human other chr5:32790915 chr5:32790920 . . 0 26 hm5C_associated_SNPs_5098 0 0 0 0 0 nucleoplasm 1 0.500231644428477 1 0.999536711143047 hm5C_site_8051 DeepMRMD:1;iRNA_m5C:0.999536711143047 8052 chr5 33441128 33441128 1 + C T rs149737496 33441138 + 33441118 33441158 41 ACCTCCCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCGTCG ACCTCCCACCTGCCTCTTGGCTCCTCTCCTCTAGGCCGTCG < 41bp 1 0.507696599454859 1 0.0635400414466858 experiment 0.984606801090282 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 UTR5 Human protein_coding chr5:33441138 chr5:33441128 . . 0 11 hm5C_associated_SNPs_5099 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8052 DeepMRMD:1;iRNA_m5C:0.999536712157815 8053 chr5 33441128 33441128 1 + C T rs149737496 33441143 + 33441123 33441163 41 CCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCGTCGCTTTC CCACCTGCCTCTTGGCTCCTCTCCTCTAGGCCGTCGCTTTC < 41bp 1 0.521078208070689 1 0.276527166366577 experiment 0.957843583858622 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 UTR5 Human protein_coding chr5:33441143 chr5:33441128 . . 0 6 hm5C_associated_SNPs_5100 0 0 1 0 0 Nucleus 1 0.500231719344269 1 0.999536561311463 hm5C_site_8053 DeepMRMD:1;iRNA_m5C:0.999536561311463 8054 chr5 33441150 33441150 1 + A G rs75248757 33441138 + 33441118 33441158 41 ACCTCCCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCGTCG ACCTCCCACCCGCCTCTTGGCTCCTCTCCTCTGGGCCGTCG < 41bp 1 0.535635659048761 1 0.112990647554398 experiment 0.928728681902478 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 splicing Human protein_coding chr5:33441138 chr5:33441150 . . 0 33 hm5C_associated_SNPs_5101 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8054 DeepMRMD:1;iRNA_m5C:0.999536712157815 8055 chr5 33441150 33441150 1 + A G rs75248757 33441143 + 33441123 33441163 41 CCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCGTCGCTTTC CCACCCGCCTCTTGGCTCCTCTCCTCTGGGCCGTCGCTTTC < 41bp 1 0.545072483800683 1 0.153971761465073 experiment 0.909855032398634 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 splicing Human protein_coding chr5:33441143 chr5:33441150 . . 0 28 hm5C_associated_SNPs_5102 0 0 1 0 1 Nucleus 1 0.500231643553262 1 0.999536712893476 hm5C_site_8055 DeepMRMD:1;iRNA_m5C:0.999536712893476 8056 chr5 33441150 33441150 1 + A G rs75248757 33441154 + 33441134 33441174 41 TTGGCTCCTCTCCTCTAGGCCGTCGCTTTCGGGTTCTCTCA TTGGCTCCTCTCCTCTGGGCCGTCGCTTTCGGGTTCTCTCA < 41bp 1 0.285347245346519 1 0.0812703669071198 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TARS ENSG00000113407 splicing Human protein_coding chr5:33441154 chr5:33441150 . . 0 17 hm5C_associated_SNPs_5103 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8056 DeepMRMD:1;iRNA_m5C:0.999536712157815 Lung cancer in ever smokers 8057 chr5 33441155 33441155 1 + G A rs115792337 33441138 + 33441118 33441158 41 ACCTCCCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCGTCG ACCTCCCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCATCG < 41bp 1 0.524161721122367 1 0.0725327730178833 experiment 0.951676557755266 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 UTR5 Human protein_coding chr5:33441138 chr5:33441155 . . 0 38 hm5C_associated_SNPs_5104 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8057 DeepMRMD:1;iRNA_m5C:0.999536712157815 Lung cancer in ever smokers 8058 chr5 33441155 33441155 1 + G A rs115792337 33441143 + 33441123 33441163 41 CCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCGTCGCTTTC CCACCCGCCTCTTGGCTCCTCTCCTCTAGGCCATCGCTTTC < 41bp 1 0.522753063364086 1 0.196986019611359 experiment 0.954493873271828 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 UTR5 Human protein_coding chr5:33441143 chr5:33441155 . . 0 33 hm5C_associated_SNPs_5105 0 0 1 0 2 Nucleus 1 0.500231600397932 1 0.999536799204136 hm5C_site_8058 DeepMRMD:1;iRNA_m5C:0.999536799204136 Lung cancer in ever smokers 8059 chr5 33441155 33441155 1 + G A rs115792337 33441154 + 33441134 33441174 41 TTGGCTCCTCTCCTCTAGGCCGTCGCTTTCGGGTTCTCTCA TTGGCTCCTCTCCTCTAGGCCATCGCTTTCGGGTTCTCTCA < 41bp 1 0.268921790886614 1 0.0393438041210175 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TARS ENSG00000113407 UTR5 Human protein_coding chr5:33441154 chr5:33441155 . . 0 22 hm5C_associated_SNPs_5106 0 0 1 0 2 Nucleus 1 0.500231114697295 1 0.99953777060541 hm5C_site_8059 DeepMRMD:1;iRNA_m5C:0.99953777060541 Lung cancer in ever smokers 8060 chr5 33461355 33461355 1 + G A rs2270905 33461353 + 33461333 33461373 41 AACTAAACCTTTCTACTCGCCCGGAAAAATTCCTTGGAGAT AACTAAACCTTTCTACTCGCCCAGAAAAATTCCTTGGAGAT < 41bp 1 0.306937242792471 1 0.11626124382019 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33461353 chr5:33461355 synonymous SNV . 0 23 hm5C_associated_SNPs_5107 0 0 1 0 2 Nucleus 1 0.500231643920422 1 0.999536712159156 hm5C_site_8060 DeepMRMD:1;iRNA_m5C:0.999536712159156 Lung cancer in ever smokers 8061 chr5 34831034 34831034 1 + G A rs201186766 34831032 + 34831012 34831052 41 GGACTTCTCCCAGGAGAAGACTGCCCGCCTCAGAACTGCTT GGACTTCTCCCAGGAGAAGACTACCCGCCTCAGAACTGCTT < 41bp 1 0.23328646717038 1 0.129493951797485 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RAI14 ENSG00000039560 UTR3 Human protein_coding chr5:34831032 chr5:34831034 . . 0 23 hm5C_associated_SNPs_5108 0 0 0 0 0 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_8061 DeepMRMD:1;iRNA_m5C:0.99953671215782 Lung cancer in ever smokers 8062 chr5 34831038 34831038 1 + G A rs151279959 34831032 + 34831012 34831052 41 GGACTTCTCCCAGGAGAAGACTGCCCGCCTCAGAACTGCTT GGACTTCTCCCAGGAGAAGACTGCCCACCTCAGAACTGCTT < 41bp 1 0.346967903061957 1 0.245652616024017 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RAI14 ENSG00000039560 UTR3 Human protein_coding chr5:34831032 chr5:34831038 . . 0 27 hm5C_associated_SNPs_5109 0 0 1 0 0 Cytosol 1 0.500231643924612 1 0.999536712150777 hm5C_site_8062 DeepMRMD:1;iRNA_m5C:0.999536712150777 Lung cancer in ever smokers 8063 chr5 34831040 34831040 1 + C T rs140599244 34831032 + 34831012 34831052 41 GGACTTCTCCCAGGAGAAGACTGCCCGCCTCAGAACTGCTT GGACTTCTCCCAGGAGAAGACTGCCCGCTTCAGAACTGCTT < 41bp 1 0.332727249402628 1 0.211628377437592 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RAI14 ENSG00000039560 UTR3 Human protein_coding chr5:34831032 chr5:34831040 . . 0 29 hm5C_associated_SNPs_5110 0 0 1 0 0 Cytosol 1 0.500231643937636 1 0.999536712124727 hm5C_site_8063 DeepMRMD:1;iRNA_m5C:0.999536712124727 Lung cancer in ever smokers 8064 chr5 34929719 34929719 1 + T C rs564251427 34929704 + 34929684 34929724 41 GCACCGCCCCCGCCGCGCTCCCGCTTGCCGCAGCCTGCGTC GCACCGCCCCCGCCGCGCTCCCGCTTGCCGCAGCCCGCGTC < 41bp 1 0.516784486231396 1 0.128358870744705 experiment 0.966431027537208 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC21 ENSG00000168724 UTR5 Human protein_coding chr5:34929704 chr5:34929719 . . 0 36 hm5C_associated_SNPs_5111 0 0 1 0 0 Cytosol 1 0.500231643916969 1 0.999536712166063 hm5C_site_8064 DeepMRMD:1;iRNA_m5C:0.999536712166063 8065 chr5 34929719 34929719 1 + T C rs564251427 34929705 + 34929685 34929725 41 CACCGCCCCCGCCGCGCTCCCGCTTGCCGCAGCCTGCGTCG CACCGCCCCCGCCGCGCTCCCGCTTGCCGCAGCCCGCGTCG < 41bp 1 0.691198163843332 1 0.103690624237061 experiment 0.617603672313337 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC21 ENSG00000168724 UTR5 Human protein_coding chr5:34929705 chr5:34929719 . . 0 35 hm5C_associated_SNPs_5112 0 0 1 0 0 Cytosol 1 0.50023164351634 1 0.999536712967321 hm5C_site_8065 DeepMRMD:1;iRNA_m5C:0.999536712967321 8066 chr5 34929719 34929719 1 + T C rs564251427 34929730 + 34929710 34929750 41 GCCGCAGCCTGCGTCGTCTGCCGCCACCGCGCGCCTTCACT GCCGCAGCCCGCGTCGTCTGCCGCCACCGCGCGCCTTCACT < 41bp 1 0.360996737509573 1 0.390122532844543 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC21 ENSG00000168724 UTR5 Human protein_coding chr5:34929730 chr5:34929719 . . 0 10 hm5C_associated_SNPs_5113 0 0 1 0 0 Cytosol 1 0.50023509801337 1 0.999529803973259 hm5C_site_8066 DeepMRMD:1;iRNA_m5C:0.999529803973259 8067 chr5 34949744 34949744 1 + G A rs112971776 34949743 + 34949723 34949763 41 GAGAGAAGAGATGGAGAGAGCGAGCACAAATGTGCCAAAAT GAGAGAAGAGATGGAGAGAGCAAGCACAAATGTGCCAAAAT < 41bp 1 0.424917157459352 1 0.719855546951294 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34949743 chr5:34949744 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_5114 0 0 0 0 2 Cytosol 1 0.500231402687327 0.560288906097412 0.999537194625345 hm5C_site_8067 DeepMRMD:0.560288906097412;iRNA_m5C:0.999537194625345 8068 chr5 36183431 36183431 1 + C T rs187484 36183440 + 36183420 36183460 41 GTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCCTCC GTGCAGTGGTGTGATCTCGGCTCACTGCAAGCTCCGCCTCC < 41bp 1 0.669129517327433 1 0.0954729616641998 experiment 0.661740965345133 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SKP2 ENSG00000145604 UTR3 Human protein_coding chr5:36183440 chr5:36183431 . . 0 12 hm5C_associated_SNPs_5115 0 0 1 0 0 Cytosol 1 0.500231645221368 1 0.999536709557264 hm5C_site_8068 DeepMRMD:1;iRNA_m5C:0.999536709557264 8069 chr5 36687095 36687095 1 + A G rs191971772 36687090 + 36687070 36687110 41 CCCCTCAGAACACCCTGTACCATCCATGGAGCACGAGGCCT CCCCTCAGAACACCCTGTACCATCCGTGGAGCACGAGGCCT < 41bp 1 0.414795126046996 1 0.294284164905548 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC1A3 ENSG00000250155 ncRNA_intronic Human antisense chr5:36687090 chr5:36687095 . . 0 26 hm5C_associated_SNPs_5117 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_8069 DeepMRMD:1;iRNA_m5C:0.999536712157815 8070 chr5 36687103 36687103 1 + C T rs73089447 36687090 + 36687070 36687110 41 CCCCTCAGAACACCCTGTACCATCCATGGAGCACGAGGCCT CCCCTCAGAACACCCTGTACCATCCATGGAGCATGAGGCCT < 41bp 1 0.335339747088715 1 0.234522014856339 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC1A3 ENSG00000250155 ncRNA_intronic Human antisense chr5:36687090 chr5:36687103 . . 0 34 hm5C_associated_SNPs_5118 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_8070 DeepMRMD:1;iRNA_m5C:0.999536712157815 8071 chr5 36986009 36986009 1 + T C rs148394805 36986004 + 36985984 36986024 41 ATAAATCAAGATCTGATAAACTTGGTTTTAAATCACCAACT ATAAATCAAGATCTGATAAACTTGGCTTTAAATCACCAACT < 41bp 1 0.261857800817322 1 0.157854080200195 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:36986004 chr5:36986009 synonymous SNV . 0 26 hm5C_associated_SNPs_5119 1 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8071 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 8072 chr5 38846172 38846172 1 + C G rs565811520 38846188 + 38846168 38846208 41 CACCCGCGCCCCACGCGCCGCCGAGGACTCGGCCCGGCTCG CACCGGCGCCCCACGCGCCGCCGAGGACTCGGCCCGGCTCG < 41bp 1 0.597488568247866 1 0.746447443962097 experiment 0.805022863504269 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OSMR ENSG00000145623 UTR5 Human protein_coding chr5:38846188 chr5:38846172 . . 0 5 hm5C_associated_SNPs_5120 0 0 1 0 1 Nucleus 1 0.500231643950153 0.507105112075806 0.999536712099694 hm5C_site_8072 DeepMRMD:0.507105112075806;iRNA_m5C:0.999536712099694 8073 chr5 38846184 38846184 1 + G A rs533781365 38846188 + 38846168 38846208 41 CACCCGCGCCCCACGCGCCGCCGAGGACTCGGCCCGGCTCG CACCCGCGCCCCACGCACCGCCGAGGACTCGGCCCGGCTCG < 41bp 1 0.613587412320037 1 0.8264040350914 experiment 0.772825175359926 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OSMR ENSG00000145623 UTR5 Human protein_coding chr5:38846188 chr5:38846184 . . 0 17 hm5C_associated_SNPs_5121 0 0 1 0 1 Nucleus 1 0.50024221089493 0.3471919298172 0.99951557821014 hm5C_site_8073 DeepMRMD:0.3471919298172;iRNA_m5C:0.99951557821014 8074 chr5 38935185 38935185 1 + C T rs168567 38935191 + 38935171 38935211 41 AGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTA AGGTGATCTGCCTGTCTTGGCCTCCCAAAGTGCTGGGATTA < 41bp 1 0.135887218751247 1 0.214219242334366 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSMR ENSG00000145623 UTR3 Human protein_coding chr5:38935191 chr5:38935185 . . 0 15 hm5C_associated_SNPs_5122 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8074 DeepMRMD:1;iRNA_m5C:0.999536712157815 8075 chr5 38935185 38935185 1 + C T rs168567 38935192 + 38935172 38935212 41 GGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTAC GGTGATCTGCCTGTCTTGGCCTCCCAAAGTGCTGGGATTAC < 41bp 1 0.422544293579793 1 0.0980918705463409 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSMR ENSG00000145623 UTR3 Human protein_coding chr5:38935192 chr5:38935185 . . 0 14 hm5C_associated_SNPs_5123 0 0 0 0 0 Nucleus 1 0.500231614373877 1 0.999536771252247 hm5C_site_8075 DeepMRMD:1;iRNA_m5C:0.999536771252247 8076 chr5 38935185 38935185 1 + C T rs168567 38935194 + 38935174 38935214 41 TGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAG TGATCTGCCTGTCTTGGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.29869398956762 1 0.115524262189865 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control OSMR ENSG00000145623 UTR3 Human protein_coding chr5:38935194 chr5:38935185 . . 0 12 hm5C_associated_SNPs_5124 0 0 0 0 0 Nucleus 1 0.500231644265856 1 0.999536711468287 hm5C_site_8076 DeepMRMD:1;iRNA_m5C:0.999536711468287 8077 chr5 38935185 38935185 1 + C T rs168567 38935195 + 38935175 38935215 41 GATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGG GATCTGCCTGTCTTGGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.385612275808735 1 0.466503530740738 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control OSMR ENSG00000145623 UTR3 Human protein_coding chr5:38935195 chr5:38935185 . . 0 11 hm5C_associated_SNPs_5125 0 0 0 0 0 Nucleus 1 0.500231643921029 1 0.999536712157942 hm5C_site_8077 DeepMRMD:1;iRNA_m5C:0.999536712157942 8078 chr5 38935185 38935185 1 + C T rs168567 38935196 + 38935176 38935216 41 ATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGC ATCTGCCTGTCTTGGCCTCCCAAAGTGCTGGGATTACAGGC < 41bp 1 0.60661427031753 1 0.519960284233093 experiment 0.78677145936494 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control OSMR ENSG00000145623 UTR3 Human protein_coding chr5:38935196 chr5:38935185 . . 0 10 hm5C_associated_SNPs_5126 0 0 0 0 0 Nucleus 1 0.500231644815336 0.960079431533814 0.999536710369329 hm5C_site_8078 DeepMRMD:0.960079431533814;iRNA_m5C:0.999536710369329 8079 chr5 38935236 38935236 1 + C T rs558853565 38935216 + 38935196 38935236 41 CAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTAGCC CAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTAGCT < 41bp 1 0.66129132527004 1 0.558277904987335 experiment 0.67741734945992 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSMR ENSG00000145623 UTR3 Human protein_coding chr5:38935216 chr5:38935236 . . 0 41 hm5C_associated_SNPs_5127 0 0 1 0 0 Nucleus 1 0.500231611254349 0.88344419002533 0.999536777491302 hm5C_site_8079 DeepMRMD:0.88344419002533;iRNA_m5C:0.999536777491302 8080 chr5 43613046 43613046 1 + A G rs35201656 43613043 + 43613023 43613063 41 GCAACTGACTGTTGGAGTCCCCAAAGAGATATTCCAAAATG GCAACTGACTGTTGGAGTCCCCAGAGAGATATTCCAAAATG < 41bp 1 0.627108854649074 1 0.419277369976044 experiment 0.745782290701853 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43613043 chr5:43613046 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_5130 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643970005 1 0.999536712059991 hm5C_site_8080 DeepMRMD:1;iRNA_m5C:0.999536712059991 8081 chr5 52095934 52095934 1 + C A rs185240714 52095954 + 52095934 52095974 41 CGTCAGCCCGCTGTTGCGTGCTGCCAGCGGGAACTGTGTAG AGTCAGCCCGCTGTTGCGTGCTGCCAGCGGGAACTGTGTAG < 41bp 1 0.46556299333569 1 0.0628389418125153 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PELO ENSG00000152684 UTR5 Human protein_coding chr5:52095954 chr5:52095934 . . 0 1 hm5C_associated_SNPs_5131 0 0 0 0 0 Ribosome 1 0.500231640796677 1 0.999536718406646 hm5C_site_8081 DeepMRMD:1;iRNA_m5C:0.999536718406646 8082 chr5 52095943 52095943 1 + G A rs114309882 52095954 + 52095934 52095974 41 CGTCAGCCCGCTGTTGCGTGCTGCCAGCGGGAACTGTGTAG CGTCAGCCCACTGTTGCGTGCTGCCAGCGGGAACTGTGTAG < 41bp 1 0.418420852631541 1 0.0422749519348145 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PELO ENSG00000152684 UTR5 Human protein_coding chr5:52095954 chr5:52095943 . . 0 10 hm5C_associated_SNPs_5132 0 0 1 0 0 Ribosome 1 0.500221937592543 1 0.999556124814914 hm5C_site_8082 DeepMRMD:1;iRNA_m5C:0.999556124814914 8083 chr5 52095944 52095944 1 + C T rs149631974 52095954 + 52095934 52095974 41 CGTCAGCCCGCTGTTGCGTGCTGCCAGCGGGAACTGTGTAG CGTCAGCCCGTTGTTGCGTGCTGCCAGCGGGAACTGTGTAG < 41bp 1 0.431338391041686 1 0.0757882595062256 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PELO ENSG00000152684 UTR5 Human protein_coding chr5:52095954 chr5:52095944 . . 0 11 hm5C_associated_SNPs_5133 0 0 1 0 0 Ribosome 1 0.500231643920196 1 0.999536712159608 hm5C_site_8083 DeepMRMD:1;iRNA_m5C:0.999536712159608 8084 chr5 53840387 53840387 1 + A T rs548785903 53840379 + 53840359 53840399 41 GGATTGATCTAAGGAGGGACCAGAAATAATTTTTGCTATTC GGATTGATCTAAGGAGGGACCAGAAATATTTTTTGCTATTC < 41bp 1 0.444787536661985 1 0.567467093467712 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX18 ENSG00000178996 UTR3 Human protein_coding chr5:53840379 chr5:53840387 . . 0 29 hm5C_associated_SNPs_5134 0 0 1 0 0 chromatin 1 0.500231644084833 0.865065813064576 0.999536711830334 hm5C_site_8084 DeepMRMD:0.865065813064576;iRNA_m5C:0.999536711830334 8085 chr5 54456071 54456071 1 + G A rs148475851 54456062 + 54456042 54456082 41 CCGCTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT CCGCTAAAATGTTCCGGGCCCAGAGCAAAAGTATTTGCAGT < 41bp 1 0.492823007664149 1 0.472694456577301 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPX8 ENSG00000164294 CDS Human protein_coding chr5:54456062 chr5:54456071 synonymous SNV . 0 30 hm5C_associated_SNPs_5135 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_8085 DeepMRMD:1;iRNA_m5C:0.999536712157815 8086 chr5 54720591 54720591 1 + C T rs200078537 54720581 + 54720561 54720601 41 CAAGAGAGATATTGTGTTTGCTGCCAGCCTCTACTTGTAGA CAAGAGAGATATTGTGTTTGCTGCCAGCCTTTACTTGTAGA < 41bp 1 0.239785818124181 1 0.107453435659409 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54720581 chr5:54720591 synonymous SNV . 0 31 hm5C_associated_SNPs_5136 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8086 DeepMRMD:1;iRNA_m5C:0.999536712157815 8087 chr5 54720799 54720799 1 + A G rs184652225 54720809 + 54720789 54720829 41 AAATGTATACAGGTGGGGCACTGTTTTGGTGGAAGGCTTGG AAATGTATACGGGTGGGGCACTGTTTTGGTGGAAGGCTTGG < 41bp 1 0.285331597216928 1 0.0935280919075012 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLPP1;SKIV2L2 ENSG00000039123;ENSG00000067113 UTR3 Human other chr5:54720809 chr5:54720799 . . 0 11 hm5C_associated_SNPs_5137 0 0 1 0 0 unknown 1 0.500231643919937 1 0.999536712160125 hm5C_site_8087 DeepMRMD:1;iRNA_m5C:0.999536712160125 8088 chr5 55204552 55204552 1 + C T rs185917439 55204556 + 55204536 55204576 41 TCATTCCCAGGAATGGCGTGCCTGGCTTAAAGAGTGAGGAG TCATTCCCAGGAATGGTGTGCCTGGCTTAAAGAGTGAGGAG < 41bp 1 0.117757974881117 1 0.110898852348328 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IL31RA ENSG00000164509 UTR3 Human protein_coding chr5:55204556 chr5:55204552 . . 0 17 hm5C_associated_SNPs_5138 0 0 0 0 0 exosome 1 0.500231627330706 1 0.999536745338589 hm5C_site_8088 DeepMRMD:1;iRNA_m5C:0.999536745338589 8089 chr5 55204553 55204553 1 + G A rs574984615 55204556 + 55204536 55204576 41 TCATTCCCAGGAATGGCGTGCCTGGCTTAAAGAGTGAGGAG TCATTCCCAGGAATGGCATGCCTGGCTTAAAGAGTGAGGAG < 41bp 1 0.125369982235466 1 0.132608234882355 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IL31RA ENSG00000164509 UTR3 Human protein_coding chr5:55204556 chr5:55204553 . . 0 18 hm5C_associated_SNPs_5139 0 0 0 0 0 exosome 1 0.500231627448253 1 0.999536745103493 hm5C_site_8089 DeepMRMD:1;iRNA_m5C:0.999536745103493 8090 chr5 56111751 56111751 1 + G C rs28710284 56111731 + 56111711 56111751 41 GCTTCCAGCCTGTGGCGGTGCCGCCGCCCCACGGAGCCGCG GCTTCCAGCCTGTGGCGGTGCCGCCGCCCCACGGAGCCGCC < 41bp 1 0.448171756150554 1 0.337517917156219 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP3K1 ENSG00000095015 CDS Human protein_coding chr5:56111731 chr5:56111751 synonymous SNV . 0 41 hm5C_associated_SNPs_5140 0 0 0 0 0 Cytosol 1 0.50023164392761 1 0.99953671214478 hm5C_site_8090 DeepMRMD:1;iRNA_m5C:0.99953671214478 8091 chr5 56526778 56526778 1 + A G rs62000370 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTGTTGGGCGTCCTAATGGAGGTAAAATT < 41bp 1 0.203831800443074 1 0.195968627929688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526778 nonsynonymous SNV 1.000 0 15 hm5C_associated_SNPs_5141 0 0 1 1 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_8091 DeepMRMD:1;iRNA_m5C:0.999536712157812 8092 chr5 56526783 56526783 1 + G A rs1130203 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTATTGGACGTCCTAATGGAGGTAAAATT < 41bp 1 0.221810074324999 1 0.0756416320800781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526783 synonymous SNV . 0 20 hm5C_associated_SNPs_5142 0 0 1 1 1 Ribosome 1 0.500231643921078 1 0.999536712157845 hm5C_site_8092 DeepMRMD:1;iRNA_m5C:0.999536712157845 8093 chr5 64267561 64267561 1 + C G rs58322956 64267545 + 64267525 64267565 41 TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGAAT TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCGGAAT < 41bp 1 0.243534114746419 1 0.675778567790985 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64267545 chr5:64267561 synonymous SNV . 0 37 hm5C_associated_SNPs_5143 0 0 1 0 2 Nucleus 1 0.500231643921092 0.64844286441803 0.999536712157815 hm5C_site_8093 DeepMRMD:0.64844286441803;iRNA_m5C:0.999536712157815 8094 chr5 64859128 64859128 1 + T G rs116792697 64859145 + 64859125 64859165 41 CGATGCGAACAACATGGCGGCGGAAAGTGGTAGCGATTTTC CGAGGCGAACAACATGGCGGCGGAAAGTGGTAGCGATTTTC < 41bp 1 0.622079073574933 1 0.46110987663269 experiment 0.755841852850133 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPWD1 ENSG00000113593 UTR5 Human protein_coding chr5:64859145 chr5:64859128 . . 0 4 hm5C_associated_SNPs_5144 0 0 1 0 0 chromatin 1 0.500231646529706 1 0.999536706940588 hm5C_site_8094 DeepMRMD:1;iRNA_m5C:0.999536706940588 8095 chr5 65118664 65118664 1 + T C rs149642804 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGGGGATCTCTGGACGGCACGGACATGC < 41bp 1 0.381197430619156 1 0.344294816255569 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118664 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_5145 0 0 1 0 1 Ribosome 1 0.50023164278379 1 0.99953671443242 hm5C_site_8095 DeepMRMD:1;iRNA_m5C:0.99953671443242 8096 chr5 65120738 65120738 1 + G A rs77676649 65120758 + 65120738 65120778 41 GCATGGTCAACATGGTGAAACCCTGTCTCTACAAAAATACA ACATGGTCAACATGGTGAAACCCTGTCTCTACAAAAATACA < 41bp 1 0.081317066541453 1 0.03866246342659 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLN ENSG00000123213 UTR3 Human protein_coding chr5:65120758 chr5:65120738 . . 0 1 hm5C_associated_SNPs_5146 0 0 0 0 0 Ribosome 1 0.500231643923869 1 0.999536712152262 hm5C_site_8096 DeepMRMD:1;iRNA_m5C:0.999536712152262 8097 chr5 68505922 68505922 1 + G A rs61743885 68505907 + 68505887 68505927 41 GGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTC GGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTC < 41bp 1 0.689905381354202 1 0.389481484889984 experiment 0.620189237291595 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPH ENSG00000153044 UTR3 Human protein_coding chr5:68505907 chr5:68505922 . . 0 36 hm5C_associated_SNPs_5147 0 0 1 0 0 Ribosome 1 0.500231644294972 1 0.999536711410057 hm5C_site_8097 DeepMRMD:1;iRNA_m5C:0.999536711410057 8098 chr5 68505922 68505922 1 + G A rs61743885 68505910 + 68505890 68505930 41 GCGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAG GCGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAG < 41bp 1 0.243337291918344 1 0.0511916279792786 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPH ENSG00000153044 UTR3 Human protein_coding chr5:68505910 chr5:68505922 . . 0 33 hm5C_associated_SNPs_5148 0 0 1 0 0 Ribosome 1 0.500231643921117 1 0.999536712157767 hm5C_site_8098 DeepMRMD:1;iRNA_m5C:0.999536712157767 8099 chr5 68505922 68505922 1 + G A rs61743885 68505911 + 68505891 68505931 41 CGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGC CGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGC < 41bp 1 0.630230508439267 1 0.0825116336345673 experiment 0.739538983121467 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPH ENSG00000153044 UTR3 Human protein_coding chr5:68505911 chr5:68505922 . . 0 32 hm5C_associated_SNPs_5149 0 0 1 0 0 Ribosome 1 0.500231733445885 1 0.999536533108229 hm5C_site_8099 DeepMRMD:1;iRNA_m5C:0.999536533108229 8100 chr5 68505922 68505922 1 + G A rs61743885 68505917 + 68505897 68505937 41 CGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAGTTCT CGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAGTTCT < 41bp 1 0.550408151667435 1 0.624884605407715 experiment 0.89918369666513 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPH ENSG00000153044 UTR3 Human protein_coding chr5:68505917 chr5:68505922 . . 0 26 hm5C_associated_SNPs_5151 0 0 1 0 0 Ribosome 1 0.500232149630105 0.75023078918457 0.999535700739791 hm5C_site_8100 DeepMRMD:0.75023078918457;iRNA_m5C:0.999535700739791 8101 chr5 68505922 68505922 1 + G A rs61743885 68505920 + 68505900 68505940 41 CTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAGTTCTGCC CTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAGTTCTGCC < 41bp 1 0.692652827377193 1 0.288315713405609 experiment 0.614694345245615 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPH ENSG00000153044 UTR3 Human protein_coding chr5:68505920 chr5:68505922 . . 0 23 hm5C_associated_SNPs_5153 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8101 DeepMRMD:1;iRNA_m5C:0.999536712157815 8102 chr5 68851207 68851207 1 + C T rs556647974 68851204 + 68851184 68851224 41 AGGTTCAAACAATTCTCCTGCCTCGGCCTCCCGAGTAGCTG AGGTTCAAACAATTCTCCTGCCTTGGCCTCCCGAGTAGCTG < 41bp 1 0.0987870813166193 1 0.0206823647022247 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OCLN ENSG00000253203 ncRNA_intronic Human transcribed_unprocessed_pseudogene chr5:68851204 chr5:68851207 . . 0 24 hm5C_associated_SNPs_5154 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8102 DeepMRMD:1;iRNA_m5C:0.999536712157815 8103 chr5 68851207 68851207 1 + C T rs556647974 68851205 + 68851185 68851225 41 GGTTCAAACAATTCTCCTGCCTCGGCCTCCCGAGTAGCTGG GGTTCAAACAATTCTCCTGCCTTGGCCTCCCGAGTAGCTGG < 41bp 1 0.631116318913889 1 0.0848690867424011 experiment 0.737767362172222 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OCLN ENSG00000253203 ncRNA_intronic Human transcribed_unprocessed_pseudogene chr5:68851205 chr5:68851207 . . 0 23 hm5C_associated_SNPs_5155 0 0 0 0 0 cytosol 1 0.500231643925602 1 0.999536712148795 hm5C_site_8103 DeepMRMD:1;iRNA_m5C:0.999536712148795 8104 chr5 68851207 68851207 1 + C T rs556647974 68851210 + 68851190 68851230 41 AAACAATTCTCCTGCCTCGGCCTCCCGAGTAGCTGGGATTA AAACAATTCTCCTGCCTTGGCCTCCCGAGTAGCTGGGATTA < 41bp 1 0.0948947743383311 1 0.118554323911667 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OCLN ENSG00000253203 ncRNA_intronic Human transcribed_unprocessed_pseudogene chr5:68851210 chr5:68851207 . . 0 18 hm5C_associated_SNPs_5156 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8104 DeepMRMD:1;iRNA_m5C:0.999536712157815 8105 chr5 68851207 68851207 1 + C T rs556647974 68851211 + 68851191 68851231 41 AACAATTCTCCTGCCTCGGCCTCCCGAGTAGCTGGGATTAC AACAATTCTCCTGCCTTGGCCTCCCGAGTAGCTGGGATTAC < 41bp 1 0.294193537330841 1 0.105265915393829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OCLN ENSG00000253203 ncRNA_intronic Human transcribed_unprocessed_pseudogene chr5:68851211 chr5:68851207 . . 0 17 hm5C_associated_SNPs_5157 0 0 0 0 0 cytosol 1 0.500231643896837 1 0.999536712206325 hm5C_site_8105 DeepMRMD:1;iRNA_m5C:0.999536712206325 8106 chr5 68851207 68851207 1 + C T rs556647974 68851213 + 68851193 68851233 41 CAATTCTCCTGCCTCGGCCTCCCGAGTAGCTGGGATTACAG CAATTCTCCTGCCTTGGCCTCCCGAGTAGCTGGGATTACAG < 41bp 1 0.645233625787966 1 0.371486395597458 experiment 0.709532748424068 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OCLN ENSG00000253203 ncRNA_intronic Human transcribed_unprocessed_pseudogene chr5:68851213 chr5:68851207 . . 0 15 hm5C_associated_SNPs_5158 0 0 0 0 0 cytosol 1 0.495879899229345 1 1 hm5C_site_8106 DeepMRMD:1;iRNA_m5C:1 8107 chr5 68851207 68851207 1 + C T rs556647974 68851214 + 68851194 68851234 41 AATTCTCCTGCCTCGGCCTCCCGAGTAGCTGGGATTACAGG AATTCTCCTGCCTTGGCCTCCCGAGTAGCTGGGATTACAGG < 41bp 1 0.357350752374927 1 0.555256187915802 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OCLN ENSG00000253203 ncRNA_intronic Human transcribed_unprocessed_pseudogene chr5:68851214 chr5:68851207 . . 0 14 hm5C_associated_SNPs_5159 0 0 0 0 0 cytosol 1 0.500231643921092 0.889487624168396 0.999536712157815 hm5C_site_8107 DeepMRMD:0.889487624168396;iRNA_m5C:0.999536712157815 8108 chr5 70895499 70895499 1 + G C rs119103219 70895490 + 70895470 70895510 41 CCTTTCTTCGCTTTAGGTCTCCATTTCTGGAATTATCCCAG CCTTTCTTCGCTTTAGGTCTCCATTTCTGCAATTATCCCAG < 41bp 1 0.0510431813746386 1 0.135745525360107 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70895490 chr5:70895499 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_5161 2 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8108 DeepMRMD:1;iRNA_m5C:0.999536712157815 3-methylcrotonyl CoA carboxylase 2 deficiency 3-methylcrotonyl CoA carboxylase 2 deficiency 8109 chr5 71403301 71403301 1 + C G rs141626917 71403316 + 71403296 71403336 41 CCTGCCGCAGTGGAGAGGAGCGGCCGGAGCGAGACACTTCG CCTGCGGCAGTGGAGAGGAGCGGCCGGAGCGAGACACTTCG < 41bp 1 0.573078258362686 1 0.608824670314789 experiment 0.853843483274629 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP1B ENSG00000131711 UTR5 Human protein_coding chr5:71403316 chr5:71403301 . . 0 6 hm5C_associated_SNPs_5162 0 0 1 0 0 Cytosol 1 0.500231637107241 0.782350659370422 0.999536725785519 hm5C_site_8109 DeepMRMD:0.782350659370422;iRNA_m5C:0.999536725785519 8110 chr5 71403306 71403306 1 + T A rs3112402 71403316 + 71403296 71403336 41 CCTGCCGCAGTGGAGAGGAGCGGCCGGAGCGAGACACTTCG CCTGCCGCAGAGGAGAGGAGCGGCCGGAGCGAGACACTTCG < 41bp 1 0.572173029177363 1 0.4260493516922 experiment 0.855653941645274 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP1B ENSG00000131711 UTR5 Human protein_coding chr5:71403316 chr5:71403306 . . 0 11 hm5C_associated_SNPs_5163 0 0 1 0 0 Cytosol 1 0.500231643921087 1 0.999536712157826 hm5C_site_8110 DeepMRMD:1;iRNA_m5C:0.999536712157826 8111 chr5 71495189 71495189 1 + G A rs144122529 71495192 + 71495172 71495212 41 GTGGCCACACACTTGGGGACCCCAGCTACTCTTATGAAACC GTGGCCACACACTTGGGAACCCCAGCTACTCTTATGAAACC < 41bp 1 0.135507586727896 1 0.213478803634644 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71495192 chr5:71495189 nonsynonymous SNV 0.952 1 18 hm5C_associated_SNPs_5164 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8111 DeepMRMD:1;iRNA_m5C:0.999536712157815 8112 chr5 72185751 72185751 1 + A G rs191625222 72185767 + 72185747 72185787 41 CATTAGCAGATTCAGTAGGACATCATTTAAACAAACCAGTA CATTGGCAGATTCAGTAGGACATCATTTAAACAAACCAGTA < 41bp 1 0.347950607136529 1 0.0755118429660797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185767 chr5:72185751 synonymous SNV . 0 5 hm5C_associated_SNPs_5165 0 0 1 0 1 Cytosol 1 0.500231643921095 1 0.999536712157809 hm5C_site_8112 DeepMRMD:1;iRNA_m5C:0.999536712157809 8113 chr5 72185751 72185751 1 + A G rs191625222 72185770 + 72185750 72185790 41 TAGCAGATTCAGTAGGACATCATTTAAACAAACCAGTAAGT TGGCAGATTCAGTAGGACATCATTTAAACAAACCAGTAAGT < 41bp 1 0.0786017408224868 1 0.0588712990283966 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185770 chr5:72185751 synonymous SNV . 0 2 hm5C_associated_SNPs_5166 0 0 1 0 1 Cytosol 1 0.500231643865937 1 0.999536712268125 hm5C_site_8113 DeepMRMD:1;iRNA_m5C:0.999536712268125 8114 chr5 72209462 72209462 1 + G T rs76192135 72209463 + 72209443 72209483 41 AGAATTTCCTTATACTGTGGCTTGGTATTATTCAAGATTAG AGAATTTCCTTATACTGTGTCTTGGTATTATTCAAGATTAG < 41bp 1 0.180596103358816 1 0.109380155801773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNPO1 ENSG00000083312 UTR3 Human protein_coding chr5:72209463 chr5:72209462 . . 0 20 hm5C_associated_SNPs_5167 0 0 1 0 0 Cytosol 1 0.500231643921373 1 0.999536712157255 hm5C_site_8114 DeepMRMD:1;iRNA_m5C:0.999536712157255 8115 chr5 72798845 72798845 1 + A G rs14010 72798844 + 72798824 72798864 41 CATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC CATTACAGGCCATGCTGAGACGAAGCAGCTGACAGAAATGC < 41bp 1 0.657944943447637 1 0.480662435293198 experiment 0.684110113104726 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798844 chr5:72798845 synonymous SNV . 0 22 hm5C_associated_SNPs_5168 0 0 1 0 1 Ribosome 1 0.500231650420348 1 0.999536699159305 hm5C_site_8115 DeepMRMD:1;iRNA_m5C:0.999536699159305 8116 chr5 72801092 72801092 1 + G A rs545142219 72801109 + 72801089 72801129 41 CCTGAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT CCTAAAGAAGTTACTGGGAGCTGCTATTTTATATTATGACT < 41bp 1 0.298476996551596 1 0.283280283212662 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BTF3 ENSG00000145741 UTR3 Human protein_coding chr5:72801109 chr5:72801092 . . 0 4 hm5C_associated_SNPs_5169 0 0 1 4 1 Ribosome 1 0.50023164397592 1 0.99953671204816 hm5C_site_8116 DeepMRMD:1;iRNA_m5C:0.99953671204816 8117 chr5 73981361 73981361 1 + C A rs140509633 73981351 + 73981331 73981371 41 CCCCAATTCCACGGCGGGCCCCTCCTGCACCCTGCTGGAGG CCCCAATTCCACGGCGGGCCCCTCCTGCACACTGCTGGAGG < 41bp 1 0.0712033946713192 1 0.0759294033050537 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HEXB ENSG00000049860 CDS Human protein_coding chr5:73981351 chr5:73981361 synonymous SNV . 0 31 hm5C_associated_SNPs_5170 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8117 DeepMRMD:1;iRNA_m5C:0.999536712157815 8118 chr5 77775593 77775593 1 + T C rs145040032 77775613 + 77775593 77775633 41 TGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAA CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAA < 41bp 1 0.592473673399529 1 0.374295383691788 experiment 0.815052653200942 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SCAMP1 ENSG00000085365 UTR3 Human protein_coding chr5:77775613 chr5:77775593 . . 0 1 hm5C_associated_SNPs_5171 0 0 1 0 0 Ribosome 1 0.500231131017675 1 0.999537737964651 hm5C_site_8118 DeepMRMD:1;iRNA_m5C:0.999537737964651 8119 chr5 77775594 77775594 1 + G A rs185956142 77775613 + 77775593 77775633 41 TGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAA TAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAA < 41bp 1 0.563338608285705 1 0.272289931774139 experiment 0.87332278342859 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SCAMP1 ENSG00000085365 UTR3 Human protein_coding chr5:77775613 chr5:77775594 . . 0 2 hm5C_associated_SNPs_5172 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8119 DeepMRMD:1;iRNA_m5C:0.999536712157815 8120 chr5 77775594 77775594 1 + G A rs185956142 77775614 + 77775594 77775634 41 GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAG AGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAG < 41bp 1 0.410449329560387 1 0.254628598690033 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SCAMP1 ENSG00000085365 UTR3 Human protein_coding chr5:77775614 chr5:77775594 . . 0 1 hm5C_associated_SNPs_5173 0 0 1 0 0 Ribosome 1 0.500231643944621 1 0.999536712110758 hm5C_site_8120 DeepMRMD:1;iRNA_m5C:0.999536712110758 8121 chr5 77775620 77775620 1 + C G rs561042616 77775613 + 77775593 77775633 41 TGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAA TGGTGGCTCACGCCTGTAATCCCAGCAGTTTGGGAGGCCAA < 41bp 1 0.603261393466903 1 0.21360170841217 experiment 0.793477213066195 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SCAMP1 ENSG00000085365 UTR3 Human protein_coding chr5:77775613 chr5:77775620 . . 0 28 hm5C_associated_SNPs_5174 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8121 DeepMRMD:1;iRNA_m5C:0.999536712157815 8122 chr5 77775620 77775620 1 + C G rs561042616 77775614 + 77775594 77775634 41 GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAG GGTGGCTCACGCCTGTAATCCCAGCAGTTTGGGAGGCCAAG < 41bp 1 0.416544836886514 1 0.126724928617477 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SCAMP1 ENSG00000085365 UTR3 Human protein_coding chr5:77775614 chr5:77775620 . . 0 27 hm5C_associated_SNPs_5175 0 0 0 0 0 Ribosome 1 0.500333657512829 1 0.999332684974342 hm5C_site_8122 DeepMRMD:1;iRNA_m5C:0.999332684974342 8123 chr5 78908580 78908580 1 + C T rs147237003 78908591 + 78908571 78908611 41 TAGCCCTTCCCGGAGGACACCTGTGAGTTTAGGGGGTTTCG TAGCCCTTCTCGGAGGACACCTGTGAGTTTAGGGGGTTTCG < 41bp 1 0.431102548746995 1 0.165830165147781 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPD4 ENSG00000164329 UTR5 Human protein_coding chr5:78908591 chr5:78908580 . . 0 10 hm5C_associated_SNPs_5176 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_8123 DeepMRMD:1;iRNA_m5C:0.999536712157813 8124 chr5 81272119 81272119 1 + C G rs187387761 81272107 + 81272087 81272127 41 CAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCC CAAAGTGCTGGGATTACAGGCGTGAGCCACTGGGCCCGGCC < 41bp 1 0.559041478107622 1 0.616923570632935 experiment 0.881917043784756 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATG10 ENSG00000152348 UTR5 Human protein_coding chr5:81272107 chr5:81272119 . . 0 33 hm5C_associated_SNPs_5178 0 0 0 0 1 Nucleus 1 0.500231643921093 0.76615285873413 0.999536712157814 hm5C_site_8124 DeepMRMD:0.76615285873413;iRNA_m5C:0.999536712157814 8125 chr5 81272119 81272119 1 + C G rs187387761 81272113 + 81272093 81272133 41 GCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCTGTTGT GCTGGGATTACAGGCGTGAGCCACTGGGCCCGGCCTGTTGT < 41bp 1 0.441522584832523 1 0.133531272411346 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATG10 ENSG00000152348 UTR5 Human protein_coding chr5:81272113 chr5:81272119 . . 0 27 hm5C_associated_SNPs_5179 0 0 0 0 1 Nucleus 1 0.500231788483925 1 0.99953642303215 hm5C_site_8125 DeepMRMD:1;iRNA_m5C:0.99953642303215 8126 chr5 81272119 81272119 1 + C G rs187387761 81272114 + 81272094 81272134 41 CTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCTGTTGTA CTGGGATTACAGGCGTGAGCCACTGGGCCCGGCCTGTTGTA < 41bp 1 0.426685591428356 1 0.795308411121368 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATG10 ENSG00000152348 UTR5 Human protein_coding chr5:81272114 chr5:81272119 . . 0 26 hm5C_associated_SNPs_5180 0 0 0 0 1 Nucleus 1 0.500231679068309 0.409383177757264 0.999536641863381 hm5C_site_8126 DeepMRMD:0.409383177757264;iRNA_m5C:0.999536641863381 8127 chr5 81600902 81600902 1 + A T rs140445230 81600888 + 81600868 81600908 41 TGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCCAA TGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGTGGCCAA < 41bp 1 0.506429375136921 1 0.278154402971268 experiment 0.987141249726158 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP1L ENSG00000205464 UTR5 Human protein_coding chr5:81600888 chr5:81600902 . . 0 35 hm5C_associated_SNPs_5181 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_8127 DeepMRMD:1;iRNA_m5C:0.999536712157815 8128 chr5 81600902 81600902 1 + A T rs140445230 81600889 + 81600869 81600909 41 GGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCCAAG GGTGGCTCACGCCTGTAATCCCAGCACTTCGGGTGGCCAAG < 41bp 1 0.300130548694321 1 0.257329344749451 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP1L ENSG00000205464 UTR5 Human protein_coding chr5:81600889 chr5:81600902 . . 0 34 hm5C_associated_SNPs_5182 0 0 0 0 0 Endoplasmic reticulum 1 0.500235106566624 1 0.999529786866752 hm5C_site_8128 DeepMRMD:1;iRNA_m5C:0.999529786866752 8129 chr5 81600996 81600996 1 + G A rs12332464 81601013 + 81600993 81601033 41 GCCGGGCGTGGTGGCAGGTGCCTGTAATCCCAGCTACTCAG GCCAGGCGTGGTGGCAGGTGCCTGTAATCCCAGCTACTCAG < 41bp 1 0.296957225524604 1 0.11196705698967 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATP6AP1L ENSG00000205464 UTR5 Human protein_coding chr5:81601013 chr5:81600996 . . 0 4 hm5C_associated_SNPs_5184 0 0 0 0 0 Endoplasmic reticulum 1 0.500231622215637 1 0.999536755568725 hm5C_site_8129 DeepMRMD:1;iRNA_m5C:0.999536755568725 8130 chr5 81600996 81600996 1 + G A rs12332464 81601014 + 81600994 81601034 41 CCGGGCGTGGTGGCAGGTGCCTGTAATCCCAGCTACTCAGG CCAGGCGTGGTGGCAGGTGCCTGTAATCCCAGCTACTCAGG < 41bp 1 0.668370194858239 1 0.773087501525879 experiment 0.663259610283523 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATP6AP1L ENSG00000205464 UTR5 Human protein_coding chr5:81601014 chr5:81600996 . . 0 3 hm5C_associated_SNPs_5185 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643703972 0.453824996948242 0.999536712592056 hm5C_site_8130 DeepMRMD:0.453824996948242;iRNA_m5C:0.999536712592056 8131 chr5 81601075 81601075 1 + G A rs62365440 81601086 + 81601066 81601106 41 GAGGTGGAGGTTGTGGTGAGCTGAGATCGCGCCATTGCTCT GAGGTGGAGATTGTGGTGAGCTGAGATCGCGCCATTGCTCT < 41bp 1 0.662340280344072 1 0.291372120380402 experiment 0.675319439311856 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP6AP1L ENSG00000205464 UTR5 Human protein_coding chr5:81601086 chr5:81601075 . . 0 10 hm5C_associated_SNPs_5186 0 0 0 0 0 Endoplasmic reticulum 1 0.50023164392109 1 0.99953671215782 hm5C_site_8131 DeepMRMD:1;iRNA_m5C:0.99953671215782 8132 chr5 81601075 81601075 1 + G A rs62365440 81601093 + 81601073 81601113 41 AGGTTGTGGTGAGCTGAGATCGCGCCATTGCTCTCCAGCTT AGATTGTGGTGAGCTGAGATCGCGCCATTGCTCTCCAGCTT < 41bp 1 0.660558620476599 1 0.605927228927612 experiment 0.678882759046803 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP6AP1L ENSG00000205464 UTR5 Human protein_coding chr5:81601093 chr5:81601075 . . 0 3 hm5C_associated_SNPs_5187 0 0 0 0 0 Endoplasmic reticulum 1 0.500234078610017 0.788145542144776 0.999531842779966 hm5C_site_8132 DeepMRMD:0.788145542144776;iRNA_m5C:0.999531842779966 8133 chr5 81601080 81601080 1 + G A rs181277132 81601086 + 81601066 81601106 41 GAGGTGGAGGTTGTGGTGAGCTGAGATCGCGCCATTGCTCT GAGGTGGAGGTTGTAGTGAGCTGAGATCGCGCCATTGCTCT < 41bp 1 0.691187680636949 1 0.416828542947769 experiment 0.617624638726102 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP6AP1L ENSG00000205464 UTR5 Human protein_coding chr5:81601086 chr5:81601080 . . 0 15 hm5C_associated_SNPs_5188 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643920859 1 0.999536712158282 hm5C_site_8133 DeepMRMD:1;iRNA_m5C:0.999536712158282 8134 chr5 81601080 81601080 1 + G A rs181277132 81601093 + 81601073 81601113 41 AGGTTGTGGTGAGCTGAGATCGCGCCATTGCTCTCCAGCTT AGGTTGTAGTGAGCTGAGATCGCGCCATTGCTCTCCAGCTT < 41bp 1 0.642656496168635 1 0.671887218952179 experiment 0.71468700766273 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP6AP1L ENSG00000205464 UTR5 Human protein_coding chr5:81601093 chr5:81601080 . . 0 8 hm5C_associated_SNPs_5189 0 0 0 0 0 Endoplasmic reticulum 1 0.50023208357843 0.656225562095642 0.999535832843141 hm5C_site_8134 DeepMRMD:0.656225562095642;iRNA_m5C:0.999535832843141 8135 chr5 82833368 82833368 1 + A G rs144610900 82833367 + 82833347 82833387 41 GAATTTGAAAGTGGAACAGCCAAAAAAGGGGCAGAATCAGT GAATTTGAAAGTGGAACAGCCGAAAAAGGGGCAGAATCAGT < 41bp 1 0.208841563959908 1 0.428435921669006 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82833367 chr5:82833368 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_5190 3 0 1 0 0 Ribosome 1 0.500231644094876 1 0.999536711810247 hm5C_site_8135 DeepMRMD:1;iRNA_m5C:0.999536711810247 not specified not specified 8136 chr5 82833369 82833369 1 + A G rs309559 82833367 + 82833347 82833387 41 GAATTTGAAAGTGGAACAGCCAAAAAAGGGGCAGAATCAGT GAATTTGAAAGTGGAACAGCCAGAAAAGGGGCAGAATCAGT < 41bp 1 0.260914036605739 1 0.467070788145065 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82833367 chr5:82833369 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_5191 3 0 1 0 0 Ribosome 1 0.500231643931544 1 0.999536712136911 hm5C_site_8136 DeepMRMD:1;iRNA_m5C:0.999536712136911 not specified not specified 8137 chr5 82834299 82834299 1 + G A rs188703 82834308 + 82834288 82834328 41 CACTCTCCCACGTAGTCCTGCCTCTGTCTTTATGGAGCAGG CACTCTCCCACATAGTCCTGCCTCTGTCTTTATGGAGCAGG < 41bp 1 0.0147565593740475 1 0.0602878332138062 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82834308 chr5:82834299 nonsynonymous SNV 0.008 1 12 hm5C_associated_SNPs_5192 3 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8137 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 8138 chr5 85915288 85915288 1 + G A rs142386563 85915269 + 85915249 85915289 41 CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGA CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGAA < 41bp 1 0.402954413544251 1 0.375348269939423 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COX7C ENSG00000127184 UTR3 Human protein_coding chr5:85915269 chr5:85915288 . . 0 40 hm5C_associated_SNPs_5193 0 0 1 2 1 Ribosome 1 0.500231643909675 1 0.999536712180651 hm5C_site_8138 DeepMRMD:1;iRNA_m5C:0.999536712180651 8139 chr5 92929684 92929684 1 + C A rs577570045 92929693 + 92929673 92929713 41 GAGGGCCGAGACAGGAGCAGCCCACCCAGCAGAAATACAAT GAGGGCCGAGAAAGGAGCAGCCCACCCAGCAGAAATACAAT < 41bp 1 0.0726683200361004 1 0.190984904766083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NR2F1 ENSG00000175745 UTR3 Human protein_coding chr5:92929693 chr5:92929684 . . 0 12 hm5C_associated_SNPs_5194 0 0 1 0 0 nucleus 1 0.500231658588398 1 0.999536682823203 hm5C_site_8139 DeepMRMD:1;iRNA_m5C:0.999536682823203 8140 chr5 92929684 92929684 1 + C A rs577570045 92929694 + 92929674 92929714 41 AGGGCCGAGACAGGAGCAGCCCACCCAGCAGAAATACAATC AGGGCCGAGAAAGGAGCAGCCCACCCAGCAGAAATACAATC < 41bp 1 0.15048815630797 1 0.0489188432693481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NR2F1 ENSG00000175745 UTR3 Human protein_coding chr5:92929694 chr5:92929684 . . 0 11 hm5C_associated_SNPs_5195 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8140 DeepMRMD:1;iRNA_m5C:0.999536712157815 8141 chr5 92929684 92929684 1 + C A rs577570045 92929695 + 92929675 92929715 41 GGGCCGAGACAGGAGCAGCCCACCCAGCAGAAATACAATCC GGGCCGAGAAAGGAGCAGCCCACCCAGCAGAAATACAATCC < 41bp 1 0.476261843149686 1 0.158089101314545 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NR2F1 ENSG00000175745 UTR3 Human protein_coding chr5:92929695 chr5:92929684 . . 0 10 hm5C_associated_SNPs_5196 0 0 1 0 0 nucleus 1 0.500231643922405 1 0.99953671215519 hm5C_site_8141 DeepMRMD:1;iRNA_m5C:0.99953671215519 8142 chr5 92929684 92929684 1 + C A rs577570045 92929697 + 92929677 92929717 41 GCCGAGACAGGAGCAGCCCACCCAGCAGAAATACAATCCGA GCCGAGAAAGGAGCAGCCCACCCAGCAGAAATACAATCCGA < 41bp 1 0.570241660424515 1 0.681437134742737 experiment 0.859516679150969 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NR2F1 ENSG00000175745 UTR3 Human protein_coding chr5:92929697 chr5:92929684 . . 0 8 hm5C_associated_SNPs_5197 0 0 1 0 0 nucleus 1 0.500231643943785 0.637125730514526 0.999536712112431 hm5C_site_8142 DeepMRMD:0.637125730514526;iRNA_m5C:0.999536712112431 8143 chr5 92929684 92929684 1 + C A rs577570045 92929698 + 92929678 92929718 41 CCGAGACAGGAGCAGCCCACCCAGCAGAAATACAATCCGAG CCGAGAAAGGAGCAGCCCACCCAGCAGAAATACAATCCGAG < 41bp 1 0.34406577576669 1 0.604243040084839 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NR2F1 ENSG00000175745 UTR3 Human protein_coding chr5:92929698 chr5:92929684 . . 0 7 hm5C_associated_SNPs_5198 0 0 1 0 0 nucleus 1 0.500231643913696 0.791513919830322 0.999536712172608 hm5C_site_8143 DeepMRMD:0.791513919830322;iRNA_m5C:0.999536712172608 8144 chr5 94031085 94031085 1 + C G rs187730482 94031082 + 94031062 94031102 41 GCATTGGTACTTACTGTGGACTTCATAGCTTACTGACAGAT GCATTGGTACTTACTGTGGACTTGATAGCTTACTGACAGAT < 41bp 1 0.492768416901607 1 0.172425389289856 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLF1 ENSG00000133302 UTR3 Human protein_coding chr5:94031082 chr5:94031085 . . 0 24 hm5C_associated_SNPs_5199 0 0 1 1 0 Cytosol 1 0.500231643387243 1 0.999536713225514 hm5C_site_8144 DeepMRMD:1;iRNA_m5C:0.999536713225514 8145 chr5 95067362 95067362 1 + C T rs138352241 95067344 + 95067324 95067364 41 CCCCGCGAAGCCGTGAGCCGCTGCTTTTCTCCGAGTCGCCG CCCCGCGAAGCCGTGAGCCGCTGCTTTTCTCCGAGTCGTCG < 41bp 1 0.539645957261378 1 0.0522703230381012 experiment 0.920708085477244 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOBTB3 ENSG00000250240 ncRNA_intronic Human antisense chr5:95067344 chr5:95067362 . . 0 39 hm5C_associated_SNPs_5200 0 0 1 0 1 Cytosol 1 0.500231643916661 1 0.999536712166678 hm5C_site_8145 DeepMRMD:1;iRNA_m5C:0.999536712166678 8146 chr5 95131401 95131401 1 + A G rs7622 95131395 + 95131375 95131415 41 GAGCTAGTCAGAAGAGAAATCAAATTAGTGTTTAAACCCAT GAGCTAGTCAGAAGAGAAATCAAATTGGTGTTTAAACCCAT < 41bp 1 0.578419087068093 1 0.784567356109619 experiment 0.843161825863814 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOBTB3 ENSG00000164292 UTR3 Human protein_coding chr5:95131395 chr5:95131401 . . 0 27 hm5C_associated_SNPs_5201 0 0 1 1 0 Cytosol 1 0.500231582540003 0.430865287780762 0.999536834919993 hm5C_site_8146 DeepMRMD:0.430865287780762;iRNA_m5C:0.999536834919993 8147 chr5 95131605 95131605 1 + G T rs565568591 95131592 + 95131572 95131612 41 GCTTCCATATATTTCCCAGTCATTTTAATTAGAGAAGATAC GCTTCCATATATTTCCCAGTCATTTTAATTAGATAAGATAC < 41bp 1 0.162979388893247 1 0.0850409865379333 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RHOBTB3 ENSG00000164292 UTR3 Human protein_coding chr5:95131592 chr5:95131605 . . 0 34 hm5C_associated_SNPs_5202 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8147 DeepMRMD:1;iRNA_m5C:0.999536712157815 8148 chr5 95131609 95131609 1 + A C rs200908250 95131592 + 95131572 95131612 41 GCTTCCATATATTTCCCAGTCATTTTAATTAGAGAAGATAC GCTTCCATATATTTCCCAGTCATTTTAATTAGAGAAGCTAC < 41bp 1 0.175896443894187 1 0.066005527973175 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RHOBTB3 ENSG00000164292 UTR3 Human protein_coding chr5:95131592 chr5:95131609 . . 0 38 hm5C_associated_SNPs_5203 0 0 1 0 0 Cytosol 1 0.500404397537409 1 0.999191204925182 hm5C_site_8148 DeepMRMD:1;iRNA_m5C:0.999191204925182 8149 chr5 95131859 95131859 1 + T C rs143291303 95131854 + 95131834 95131874 41 ACAGCTAAACTTTTCAACTGCAATTTTAAAAACTACACTAC ACAGCTAAACTTTTCAACTGCAATTCTAAAAACTACACTAC < 41bp 1 0.233786187456821 1 0.0688180029392242 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOBTB3 ENSG00000164292 UTR3 Human protein_coding chr5:95131854 chr5:95131859 . . 0 26 hm5C_associated_SNPs_5204 0 0 1 1 0 Cytosol 1 0.500226665435922 1 0.999546669128155 hm5C_site_8149 DeepMRMD:1;iRNA_m5C:0.999546669128155 8150 chr5 96063212 96063212 1 + A G rs113125742 96063227 + 96063207 96063247 41 ACCTGAGAAGAAGTCACAGTCAACCAAGGTAAATAGTTTAA ACCTGGGAAGAAGTCACAGTCAACCAAGGTAAATAGTTTAA < 41bp 1 0.304946605782635 1 0.262213110923767 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAST ENSG00000153113 CDS Human protein_coding chr5:96063227 chr5:96063212 nonsynonymous SNV 0.992 4 6 hm5C_associated_SNPs_5207 0 0 1 0 2 Ribosome 1 0.500231741721416 1 0.999536516557168 hm5C_site_8150 DeepMRMD:1;iRNA_m5C:0.999536516557168 8151 chr5 96109733 96109733 1 + A G rs181855866 96109719 + 96109699 96109739 41 TATGGGATTTTACACACCACCAGCTTAAAATGCTATGTCTC TATGGGATTTTACACACCACCAGCTTAAAATGCTGTGTCTC < 41bp 1 0.399922138486188 1 0.688593804836273 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAST ENSG00000153113 UTR3 Human protein_coding chr5:96109719 chr5:96109733 . . 0 35 hm5C_associated_SNPs_5208 0 0 1 0 0 Ribosome 1 0.500231643921098 0.622812390327454 0.999536712157803 hm5C_site_8151 DeepMRMD:0.622812390327454;iRNA_m5C:0.999536712157803 8152 chr5 96253371 96253371 1 + G A rs536939757 96253351 + 96253331 96253371 41 CTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGG CTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGA < 41bp 1 0.595612524786407 1 0.320230603218079 experiment 0.808774950427185 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERAP2 ENSG00000164308 UTR3 Human protein_coding chr5:96253351 chr5:96253371 . . 0 41 hm5C_associated_SNPs_5209 0 0 0 0 0 exosome 1 0.500231643480041 1 0.999536713039918 hm5C_site_8152 DeepMRMD:1;iRNA_m5C:0.999536713039918 8153 chr5 96253371 96253371 1 + G A rs536939757 96253358 + 96253338 96253378 41 CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGA CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCTGA < 41bp 1 0.296650836682454 1 0.21136200428009 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERAP2 ENSG00000164308 UTR3 Human protein_coding chr5:96253358 chr5:96253371 . . 0 34 hm5C_associated_SNPs_5210 0 0 0 0 0 exosome 1 0.500231643921086 1 0.999536712157828 hm5C_site_8153 DeepMRMD:1;iRNA_m5C:0.999536712157828 8154 chr5 96253371 96253371 1 + G A rs536939757 96253359 + 96253339 96253379 41 GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAG GGTGGCTCACGCCTGTAATCCCAGCACTTTGGAAGGCTGAG < 41bp 1 0.190565867597519 1 0.182915329933167 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERAP2 ENSG00000164308 UTR3 Human protein_coding chr5:96253359 chr5:96253371 . . 0 33 hm5C_associated_SNPs_5211 0 0 0 0 0 exosome 1 0.500251228593489 1 0.999497542813023 hm5C_site_8154 DeepMRMD:1;iRNA_m5C:0.999497542813023 8155 chr5 102345546 102345546 1 + A C rs2230457 102345555 + 102345535 102345575 41 GGGGAAATTATAGACATCTTCAAGCCAGTGCGCAAGGTATT GGGGAAATTATCGACATCTTCAAGCCAGTGCGCAAGGTATT < 41bp 1 0.280808092174734 1 0.415910065174103 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102345555 chr5:102345546 synonymous SNV . 0 12 hm5C_associated_SNPs_5213 0 0 0 0 2 Ribosome 1 0.500236804535495 1 0.999526390929011 hm5C_site_8155 DeepMRMD:1;iRNA_m5C:0.999526390929011 8156 chr5 102472497 102472497 1 + C T rs114517746 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGATTTGAATATGCAGTATCTCATACAAGATAGG < 41bp 1 0.380241225564404 1 0.170014649629593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472497 synonymous SNV . 0 11 hm5C_associated_SNPs_5214 0 0 1 4 2 Cytosol 1 0.500231674644782 1 0.999536650710435 hm5C_site_8156 DeepMRMD:1;iRNA_m5C:0.999536650710435 8157 chr5 111496562 111496562 1 + C G rs35445142 111496579 + 111496559 111496599 41 GTCCTTTCTTCCTTTTGGTGCGAGCTTGCTGTGGTTTTTGC GTCGTTTCTTCCTTTTGGTGCGAGCTTGCTGTGGTTTTTGC < 41bp 1 0.329359520743428 1 0.311429679393768 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496579 chr5:111496562 . . 0 4 hm5C_associated_SNPs_5215 0 0 1 0 0 unknown 1 0.500231643914622 1 0.999536712170755 hm5C_site_8157 DeepMRMD:1;iRNA_m5C:0.999536712170755 8158 chr5 111496576 111496576 1 + G A rs374211009 111496579 + 111496559 111496599 41 GTCCTTTCTTCCTTTTGGTGCGAGCTTGCTGTGGTTTTTGC GTCCTTTCTTCCTTTTGATGCGAGCTTGCTGTGGTTTTTGC < 41bp 1 0.397997467533361 1 0.352875530719757 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496579 chr5:111496576 . . 0 18 hm5C_associated_SNPs_5216 0 0 1 1 0 unknown 1 0.500231672186042 1 0.999536655627916 hm5C_site_8158 DeepMRMD:1;iRNA_m5C:0.999536655627916 8159 chr5 111496581 111496581 1 + A G rs190479616 111496579 + 111496559 111496599 41 GTCCTTTCTTCCTTTTGGTGCGAGCTTGCTGTGGTTTTTGC GTCCTTTCTTCCTTTTGGTGCGGGCTTGCTGTGGTTTTTGC < 41bp 1 0.481156965768151 1 0.586247086524963 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496579 chr5:111496581 . . 0 23 hm5C_associated_SNPs_5217 0 0 1 1 0 unknown 1 0.500231643921402 0.827505826950074 0.999536712157196 hm5C_site_8159 DeepMRMD:0.827505826950074;iRNA_m5C:0.999536712157196 8160 chr5 111496598 111496598 1 + G T rs17134162 111496579 + 111496559 111496599 41 GTCCTTTCTTCCTTTTGGTGCGAGCTTGCTGTGGTTTTTGC GTCCTTTCTTCCTTTTGGTGCGAGCTTGCTGTGGTTTTTTC < 41bp 1 0.32659581645038 1 0.371701419353485 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496579 chr5:111496598 . . 0 40 hm5C_associated_SNPs_5218 0 0 1 0 0 unknown 1 0.500231645010553 1 0.999536709978894 hm5C_site_8160 DeepMRMD:1;iRNA_m5C:0.999536709978894 8161 chr5 111496834 111496834 1 + C G rs146721641 111496832 + 111496812 111496852 41 ATCGACTATGCCAGGGAGTTCTCCAGATAAGCCTGGTTTTA ATCGACTATGCCAGGGAGTTCTGCAGATAAGCCTGGTTTTA < 41bp 1 0.694614317738808 1 0.403013825416565 experiment 0.610771364522383 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496832 chr5:111496834 . . 0 23 hm5C_associated_SNPs_5219 0 0 1 4 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8161 DeepMRMD:1;iRNA_m5C:0.999536712157815 8162 chr5 111497307 111497307 1 + T G rs17266115 111497298 + 111497278 111497318 41 TGATACCTTTGGTGTAGGAGCTGCATAAGTAACAGTTGCTG TGATACCTTTGGTGTAGGAGCTGCATAAGGAACAGTTGCTG < 41bp 1 0.647756922800694 1 0.547471821308136 experiment 0.704486154398612 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA13 ENSG00000238363 ncRNA_exonic Human snoRNA chr5:111497298 chr5:111497307 . . 0 30 hm5C_associated_SNPs_5220 0 0 1 0 0 unknown 1 0.500235939179478 0.905056357383728 0.999528121641045 hm5C_site_8162 DeepMRMD:0.905056357383728;iRNA_m5C:0.999528121641045 8163 chr5 111497307 111497307 1 + T G rs17266115 111497310 + 111497290 111497330 41 TGTAGGAGCTGCATAAGTAACAGTTGCTGCTTTTACGTTTC TGTAGGAGCTGCATAAGGAACAGTTGCTGCTTTTACGTTTC < 41bp 1 0.360858822412553 1 0.150012135505676 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA13 ENSG00000238363 ncRNA_exonic Human snoRNA chr5:111497310 chr5:111497307 . . 0 18 hm5C_associated_SNPs_5221 0 0 1 0 0 unknown 1 0.500231643921086 1 0.999536712157827 hm5C_site_8163 DeepMRMD:1;iRNA_m5C:0.999536712157827 8164 chr5 112164557 112164557 1 + T C rs144056494 112164560 + 112164540 112164580 41 GATTAATTTGCAGGTTATTGCGAGTGTTTTGAGGAATTTGT GATTAATTTGCAGGTTACTGCGAGTGTTTTGAGGAATTTGT < 41bp 1 0.117394149730026 1 0.382902562618256 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC ENSG00000134982;ENSG00000258864 CDS Human other chr5:112164560 chr5:112164557 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_5222 4 0 1 0 1 Cytosol 1 0.500231643920526 1 0.999536712158948 hm5C_site_8164 DeepMRMD:1;iRNA_m5C:0.999536712158948 not provided not provided 8165 chr5 112164561 112164561 1 + G A rs351771 112164560 + 112164540 112164580 41 GATTAATTTGCAGGTTATTGCGAGTGTTTTGAGGAATTTGT GATTAATTTGCAGGTTATTGCAAGTGTTTTGAGGAATTTGT < 41bp 1 0.141185035120322 1 0.311737298965454 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC ENSG00000134982;ENSG00000258864 CDS Human other chr5:112164560 chr5:112164561 synonymous SNV . 0 22 hm5C_associated_SNPs_5223 5 0 1 0 1 Cytosol 1 0.500231643995247 1 0.999536712009507 hm5C_site_8165 DeepMRMD:1;iRNA_m5C:0.999536712009507 not specified not specified 8166 chr5 112197046 112197046 1 + C T rs73220042 112197065 + 112197045 112197085 41 GCTCCTGGGTTGTTGAGACTCTTGTGAAGATGGCTTGCGCT GTTCCTGGGTTGTTGAGACTCTTGTGAAGATGGCTTGCGCT < 41bp 1 0.615989220733252 1 0.210376560688019 experiment 0.768021558533497 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRP19 ENSG00000153037;ENSG00000272869 UTR5 Human other chr5:112197065 chr5:112197046 . . 0 2 hm5C_associated_SNPs_5224 0 0 1 0 1 Ribosome 1 0.500231635982724 1 0.999536728034553 hm5C_site_8166 DeepMRMD:1;iRNA_m5C:0.999536728034553 8167 chr5 112197048 112197048 1 + C G rs141113736 112197065 + 112197045 112197085 41 GCTCCTGGGTTGTTGAGACTCTTGTGAAGATGGCTTGCGCT GCTGCTGGGTTGTTGAGACTCTTGTGAAGATGGCTTGCGCT < 41bp 1 0.639414481977335 1 0.195974886417389 experiment 0.721171036045331 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRP19 ENSG00000153037;ENSG00000272869 UTR5 Human other chr5:112197065 chr5:112197048 . . 0 4 hm5C_associated_SNPs_5225 0 0 1 0 1 Ribosome 1 0.500231641940213 1 0.999536716119573 hm5C_site_8167 DeepMRMD:1;iRNA_m5C:0.999536716119573 8168 chr5 112350157 112350157 1 + C T rs182956481 112350173 + 112350153 112350193 41 TAAGCCCCTGGATGATGGAGCGAGAAGGGAAGGGGTATGCA TAAGTCCCTGGATGATGGAGCGAGAAGGGAAGGGGTATGCA < 41bp 1 0.691896668668913 1 0.490441679954529 experiment 0.616206662662174 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCP2 ENSG00000172795 UTR3 Human protein_coding chr5:112350173 chr5:112350157 . . 0 5 hm5C_associated_SNPs_5226 0 0 1 0 0 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_8168 DeepMRMD:1;iRNA_m5C:0.99953671215782 8169 chr5 112350649 112350649 1 + T C rs187595801 112350646 + 112350626 112350666 41 AAGGAATTCACTTGGTAGTACTTTGCTTTAGCTTTTAAATG AAGGAATTCACTTGGTAGTACTTCGCTTTAGCTTTTAAATG < 41bp 1 0.0592489400935293 1 0.0746262669563293 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DCP2 ENSG00000172795 UTR3 Human protein_coding chr5:112350646 chr5:112350649 . . 0 24 hm5C_associated_SNPs_5228 0 0 1 0 0 Ribosome 1 0.500231638103513 1 0.999536723792973 hm5C_site_8169 DeepMRMD:1;iRNA_m5C:0.999536723792973 8170 chr5 112868684 112868684 1 + G A rs115673426 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTGTGGCTGAAAGAGTTGCCACAGAGAGACGGGAAAGGA < 41bp 1 0.39878742590187 1 0.0776061415672302 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868684 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_5230 0 0 1 0 1 Cytosol 1 0.500231343071306 1 0.999537313857387 hm5C_site_8170 DeepMRMD:1;iRNA_m5C:0.999537313857387 8171 chr5 112868684 112868684 1 + G A rs115673426 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTGTGGCTGAAAGAGTTGCCACAGAGAGACGGGAAAGGAT < 41bp 1 0.584437506971849 1 0.70954293012619 experiment 0.831124986056302 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868684 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_5231 0 0 1 0 1 Cytosol 1 0.500231643968701 0.58091413974762 0.999536712062597 hm5C_site_8171 DeepMRMD:0.58091413974762;iRNA_m5C:0.999536712062597 8172 chr5 112868693 112868693 1 + C A rs6594732 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGAAGGGAAAGGA < 41bp 1 0.544443234611359 1 0.119975000619888 experiment 0.911113530777282 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868693 synonymous SNV . 0 32 hm5C_associated_SNPs_5232 0 0 1 0 1 Cytosol 1 0.500231528316082 1 0.999536943367837 hm5C_site_8172 DeepMRMD:1;iRNA_m5C:0.999536943367837 8173 chr5 112868693 112868693 1 + C A rs6594732 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTGTGGCTGAAAGAGTTGCCGCAGAGAGAAGGGAAAGGAT < 41bp 1 0.6336793617344 1 0.783193707466125 experiment 0.7326412765312 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868693 synonymous SNV . 0 31 hm5C_associated_SNPs_5233 0 0 1 0 1 Cytosol 1 0.500231642869034 0.43361258506775 0.999536714261931 hm5C_site_8173 DeepMRMD:0.43361258506775;iRNA_m5C:0.999536714261931 8174 chr5 112868694 112868694 1 + G A rs145755313 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACAGGAAAGGA < 41bp 1 0.530866056180708 1 0.109735250473022 experiment 0.938267887638584 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868694 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_5234 0 0 1 0 1 Cytosol 1 0.500231119128764 1 0.999537761742472 hm5C_site_8174 DeepMRMD:1;iRNA_m5C:0.999537761742472 8175 chr5 112868694 112868694 1 + G A rs145755313 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACAGGAAAGGAT < 41bp 1 0.626749933854346 1 0.738412976264954 experiment 0.746500132291309 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868694 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_5235 0 0 1 0 1 Cytosol 1 0.500311215379816 0.523174047470092 0.999377569240367 hm5C_site_8175 DeepMRMD:0.523174047470092;iRNA_m5C:0.999377569240367 8176 chr5 118729327 118729327 1 + A G rs1045242 118729326 + 118729306 118729346 41 AGATATGTGGTTGGGTAATGCAAATGTAGTTATACAAAGAA AGATATGTGGTTGGGTAATGCGAATGTAGTTATACAAAGAA < 41bp 1 0.644927688937801 1 0.418798506259918 experiment 0.710144622124398 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNFAIP8 ENSG00000145779 UTR3 Human protein_coding chr5:118729326 chr5:118729327 . . 0 22 hm5C_associated_SNPs_5236 0 1 1 0 0 Cytosol 1 0.500231643926601 1 0.999536712146797 hm5C_site_8176 DeepMRMD:1;iRNA_m5C:0.999536712146797 8177 chr5 118729388 118729388 1 + A G rs11064 118729387 + 118729367 118729407 41 CTGAGGACTTTTTAATAGGGCAGTTGTTGTGTTGGTGGCAC CTGAGGACTTTTTAATAGGGCGGTTGTTGTGTTGGTGGCAC < 41bp 1 0.412169123171636 1 0.178697317838669 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNFAIP8 ENSG00000145779 UTR3 Human protein_coding chr5:118729387 chr5:118729388 . . 0 22 hm5C_associated_SNPs_5237 0 0 1 4 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_8177 DeepMRMD:1;iRNA_m5C:0.999536712157814 8178 chr5 118877677 118877677 1 + C T rs12714 118877694 + 118877674 118877714 41 CTACGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA CTATGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA < 41bp 1 0.157555485526115 1 0.0969866216182709 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118877694 chr5:118877677 synonymous SNV . 0 4 hm5C_associated_SNPs_5238 3 0 1 0 1 Cytosol 1 0.500231643931249 1 0.999536712137501 hm5C_site_8178 DeepMRMD:1;iRNA_m5C:0.999536712137501 not specified not specified 8179 chr5 118877695 118877695 1 + A G rs111671384 118877694 + 118877674 118877714 41 CTACGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA CTACGCCAAGCTCTGAAGGGCGCACTACACTATTAATAAAA < 41bp 1 0.195290963577783 1 0.102002441883087 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSD17B4 ENSG00000133835 UTR3 Human protein_coding chr5:118877694 chr5:118877695 . . 0 22 hm5C_associated_SNPs_5239 3 0 1 3 1 Cytosol 1 0.50023164392698 1 0.99953671214604 hm5C_site_8179 DeepMRMD:1;iRNA_m5C:0.99953671214604 not specified not specified 8180 chr5 122435540 122435540 1 + A G rs139705595 122435560 + 122435540 122435580 41 ATCTGCGCGGCGCAGAGGATCCAGCAAGGCACCTGGATTGG GTCTGCGCGGCGCAGAGGATCCAGCAAGGCACCTGGATTGG < 41bp 1 0.317172375869967 1 0.118252575397491 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM6 ENSG00000061455 CDS Human protein_coding chr5:122435560 chr5:122435540 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_5241 0 0 0 0 0 exosome 1 0.500231643921075 1 0.999536712157851 hm5C_site_8180 DeepMRMD:1;iRNA_m5C:0.999536712157851 8181 chr5 126889589 126889589 1 + G A rs147931114 126889593 + 126889573 126889613 41 GGTAAGCCTCCTGCTCGGAACCGTGTGAGTGGGTGAGGAAG GGTAAGCCTCCTGCTCAGAACCGTGTGAGTGGGTGAGGAAG < 41bp 1 0.268170760244579 1 0.086099773645401 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC1 ENSG00000164244 UTR3 Human protein_coding chr5:126889593 chr5:126889589 . . 0 17 hm5C_associated_SNPs_5242 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157817 hm5C_site_8181 DeepMRMD:1;iRNA_m5C:0.999536712157817 8182 chr5 126889594 126889594 1 + C G rs141708541 126889593 + 126889573 126889613 41 GGTAAGCCTCCTGCTCGGAACCGTGTGAGTGGGTGAGGAAG GGTAAGCCTCCTGCTCGGAACGGTGTGAGTGGGTGAGGAAG < 41bp 1 0.532185876921598 1 0.255441248416901 experiment 0.935628246156803 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC1 ENSG00000164244 UTR3 Human protein_coding chr5:126889593 chr5:126889594 . . 0 22 hm5C_associated_SNPs_5243 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8182 DeepMRMD:1;iRNA_m5C:0.999536712157815 8183 chr5 126889595 126889595 1 + G A rs147072598 126889593 + 126889573 126889613 41 GGTAAGCCTCCTGCTCGGAACCGTGTGAGTGGGTGAGGAAG GGTAAGCCTCCTGCTCGGAACCATGTGAGTGGGTGAGGAAG < 41bp 1 0.151122263859671 1 0.0999765396118164 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC1 ENSG00000164244 UTR3 Human protein_coding chr5:126889593 chr5:126889595 . . 0 23 hm5C_associated_SNPs_5244 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8183 DeepMRMD:1;iRNA_m5C:0.999536712157815 8184 chr5 130539101 130539101 1 + T C rs17166026 130539083 + 130539063 130539103 41 ATTGAAAATTCTGGAGATGACAGTTTTTCAAAAATCTATTG ATTGAAAATTCTGGAGATGACAGTTTTTCAAAAATCTACTG < 41bp 1 0.687698429757524 1 0.0731565654277802 experiment 0.624603140484952 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LYRM7 ENSG00000186687 UTR3 Human protein_coding chr5:130539083 chr5:130539101 . . 0 39 hm5C_associated_SNPs_5245 0 0 1 0 0 Ribosome 1 0.500231811097987 1 0.999536377804026 hm5C_site_8184 DeepMRMD:1;iRNA_m5C:0.999536377804026 8185 chr5 131667460 131667460 1 + C A rs200185233 131667467 + 131667447 131667487 41 AGGAGCTAAATCCCCTGAAGCAGCAGAAAGCTTTCATTCTG AGGAGCTAAATCCACTGAAGCAGCAGAAAGCTTTCATTCTG < 41bp 1 0.634810499825537 1 0.723484396934509 experiment 0.730379000348926 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131667467 chr5:131667460 synonymous SNV . 0 14 hm5C_associated_SNPs_5246 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921012 0.553031206130982 0.999536712157977 hm5C_site_8185 DeepMRMD:0.553031206130982;iRNA_m5C:0.999536712157977 8186 chr5 131892962 131892962 1 + C T rs186356727 131892980 + 131892960 131893000 41 CTCAGTTAAGCCTTTGTGGGCTCCAGGTCCCTGGTGAGATT CTTAGTTAAGCCTTTGTGGGCTCCAGGTCCCTGGTGAGATT < 41bp 1 0.477820849367957 1 0.235883444547653 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD50 ENSG00000113522 UTR5 Human protein_coding chr5:131892980 chr5:131892962 . . 0 3 hm5C_associated_SNPs_5247 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_8186 DeepMRMD:1;iRNA_m5C:0.999536712157815 8187 chr5 131892979 131892979 1 + G A rs4526098 131892980 + 131892960 131893000 41 CTCAGTTAAGCCTTTGTGGGCTCCAGGTCCCTGGTGAGATT CTCAGTTAAGCCTTTGTGGACTCCAGGTCCCTGGTGAGATT < 41bp 1 0.444183167573925 1 0.1354720890522 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD50 ENSG00000113522 UTR5 Human protein_coding chr5:131892980 chr5:131892979 . . 0 20 hm5C_associated_SNPs_5248 1 0 1 0 0 Cytosol 1 0.500231643922456 1 0.999536712155087 hm5C_site_8187 DeepMRMD:1;iRNA_m5C:0.999536712155087 not specified not specified 8188 chr5 131940521 131940521 1 + C A rs181961360 131940539 + 131940519 131940559 41 ATCGTAAGCTTATACAGGACCAGCAGGAACAGATTCAACAT ATAGTAAGCTTATACAGGACCAGCAGGAACAGATTCAACAT < 41bp 1 0.671288005243013 1 0.22568616271019 experiment 0.657423989513974 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131940539 chr5:131940521 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_5249 1 0 1 0 1 Cytosol 1 0.500231634960576 1 0.999536730078849 hm5C_site_8188 DeepMRMD:1;iRNA_m5C:0.999536730078849 Hereditary cancer-predisposing syndrome Hereditary cancer-predisposing syndrome 8189 chr5 132203285 132203285 1 + C A rs201494744 132203297 + 132203277 132203317 41 AACGCATCCGGATGACGGTTCCCTGTCTCTGAAAGACCTTT AACGCATCAGGATGACGGTTCCCTGTCTCTGAAAGACCTTT < 41bp 1 0.161402210846784 1 0.0141628980636597 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UQCRQ ENSG00000164405 UTR3 Human protein_coding chr5:132203297 chr5:132203285 . . 0 9 hm5C_associated_SNPs_5252 0 0 1 0 0 Cytosol 1 0.500231643923008 1 0.999536712153985 hm5C_site_8189 DeepMRMD:1;iRNA_m5C:0.999536712153985 8190 chr5 132203285 132203285 1 + C A rs201494744 132203298 + 132203278 132203318 41 ACGCATCCGGATGACGGTTCCCTGTCTCTGAAAGACCTTTC ACGCATCAGGATGACGGTTCCCTGTCTCTGAAAGACCTTTC < 41bp 1 0.325780879710225 1 0.0251768827438354 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UQCRQ ENSG00000164405 UTR3 Human protein_coding chr5:132203298 chr5:132203285 . . 0 8 hm5C_associated_SNPs_5253 0 0 1 0 0 Cytosol 1 0.500252344172967 1 0.999495311654067 hm5C_site_8190 DeepMRMD:1;iRNA_m5C:0.999495311654067 8191 chr5 132203294 132203294 1 + G A rs200725534 132203297 + 132203277 132203317 41 AACGCATCCGGATGACGGTTCCCTGTCTCTGAAAGACCTTT AACGCATCCGGATGACGATTCCCTGTCTCTGAAAGACCTTT < 41bp 1 0.216594821550295 1 0.0320066213607788 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UQCRQ ENSG00000164405 UTR3 Human protein_coding chr5:132203297 chr5:132203294 . . 0 18 hm5C_associated_SNPs_5254 0 0 1 0 0 Cytosol 1 0.500229645904534 1 0.999540708190932 hm5C_site_8191 DeepMRMD:1;iRNA_m5C:0.999540708190932 8192 chr5 132203294 132203294 1 + G A rs200725534 132203298 + 132203278 132203318 41 ACGCATCCGGATGACGGTTCCCTGTCTCTGAAAGACCTTTC ACGCATCCGGATGACGATTCCCTGTCTCTGAAAGACCTTTC < 41bp 1 0.308170983788947 1 0.0240646004676819 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UQCRQ ENSG00000164405 UTR3 Human protein_coding chr5:132203298 chr5:132203294 . . 0 17 hm5C_associated_SNPs_5255 0 0 1 0 0 Cytosol 1 0.500231643920369 1 0.999536712159262 hm5C_site_8192 DeepMRMD:1;iRNA_m5C:0.999536712159262 8193 chr5 133450497 133450497 1 + A G rs173424 133450480 + 133450460 133450500 41 AGGCGGAGTCAGCCCGCGCTCCGCCCGCCGCGATCCGAGCT AGGCGGAGTCAGCCCGCGCTCCGCCCGCCGCGATCCGGGCT < 41bp 1 0.547020265884371 1 0.451708614826202 experiment 0.905959468231258 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TCF7 ENSG00000081059 UTR5 Human protein_coding chr5:133450480 chr5:133450497 . . 0 38 hm5C_associated_SNPs_5257 0 0 0 0 0 Cytosol 1 0.500231642707094 1 0.999536714585812 hm5C_site_8193 DeepMRMD:1;iRNA_m5C:0.999536714585812 8194 chr5 133450497 133450497 1 + A G rs173424 133450481 + 133450461 133450501 41 GGCGGAGTCAGCCCGCGCTCCGCCCGCCGCGATCCGAGCTC GGCGGAGTCAGCCCGCGCTCCGCCCGCCGCGATCCGGGCTC < 41bp 1 0.655766060769742 1 0.27586430311203 experiment 0.688467878460516 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TCF7 ENSG00000081059 UTR5 Human protein_coding chr5:133450481 chr5:133450497 . . 0 37 hm5C_associated_SNPs_5258 0 0 0 0 0 Cytosol 1 0.500231645834964 1 0.999536708330072 hm5C_site_8194 DeepMRMD:1;iRNA_m5C:0.999536708330072 8195 chr5 133450497 133450497 1 + A G rs173424 133450483 + 133450463 133450503 41 CGGAGTCAGCCCGCGCTCCGCCCGCCGCGATCCGAGCTCGG CGGAGTCAGCCCGCGCTCCGCCCGCCGCGATCCGGGCTCGG < 41bp 1 0.42055461330411 1 0.268860638141632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TCF7 ENSG00000081059 UTR5 Human protein_coding chr5:133450483 chr5:133450497 . . 0 35 hm5C_associated_SNPs_5259 0 0 0 0 0 Cytosol 1 0.500231640243753 1 0.999536719512493 hm5C_site_8195 DeepMRMD:1;iRNA_m5C:0.999536719512493 8196 chr5 133450497 133450497 1 + A G rs173424 133450484 + 133450464 133450504 41 GGAGTCAGCCCGCGCTCCGCCCGCCGCGATCCGAGCTCGGA GGAGTCAGCCCGCGCTCCGCCCGCCGCGATCCGGGCTCGGA < 41bp 1 0.361098651579711 1 0.0471323430538177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TCF7 ENSG00000081059 UTR5 Human protein_coding chr5:133450484 chr5:133450497 . . 0 34 hm5C_associated_SNPs_5260 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_8196 DeepMRMD:1;iRNA_m5C:0.999536712157815 8197 chr5 134094463 134094463 1 + C G rs112836736 134094483 + 134094463 134094503 41 CACGTCCTGTTTTCGTTGGCCGCGCTGGGATGGCCGCCACA GACGTCCTGTTTTCGTTGGCCGCGCTGGGATGGCCGCCACA < 41bp 1 0.614266661497521 1 0.450779110193253 experiment 0.771466677004957 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DDX46 ENSG00000145833 upstream Human protein_coding chr5:134094483 chr5:134094463 . . 0 1 hm5C_associated_SNPs_5263 0 0 1 0 0 Cytosol 1 0.500231642915827 1 0.999536714168345 hm5C_site_8197 DeepMRMD:1;iRNA_m5C:0.999536714168345 8198 chr5 134094501 134094501 1 + A G rs574119241 134094483 + 134094463 134094503 41 CACGTCCTGTTTTCGTTGGCCGCGCTGGGATGGCCGCCACA CACGTCCTGTTTTCGTTGGCCGCGCTGGGATGGCCGCCGCA < 41bp 1 0.616209298326202 1 0.559758722782135 experiment 0.767581403347596 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DDX46 ENSG00000145833 UTR5 Human protein_coding chr5:134094483 chr5:134094501 . . 0 39 hm5C_associated_SNPs_5264 0 0 1 0 0 Cytosol 1 0.500231646468569 0.88048255443573 0.999536707062862 hm5C_site_8198 DeepMRMD:0.88048255443573;iRNA_m5C:0.999536707062862 8199 chr5 134236089 134236089 1 + G T rs114558517 134236096 + 134236076 134236116 41 CAGCAGGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCA CAGCAGGCTGGGCTCAGTGGCTCATGCCTGTAATCCCAGCA < 41bp 1 0.652379817261612 1 0.277602970600128 experiment 0.695240365476775 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TXNDC15 ENSG00000113621 UTR3 Human protein_coding chr5:134236096 chr5:134236089 . . 0 14 hm5C_associated_SNPs_5266 0 0 1 0 0 Ribosome 1 0.500214441205051 1 0.999571117589899 hm5C_site_8199 DeepMRMD:1;iRNA_m5C:0.999571117589899 8200 chr5 134236089 134236089 1 + G T rs114558517 134236098 + 134236078 134236118 41 GCAGGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACT GCAGGCTGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT < 41bp 1 0.6830721766763 1 0.393440872430801 experiment 0.633855646647401 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TXNDC15 ENSG00000113621 UTR3 Human protein_coding chr5:134236098 chr5:134236089 . . 0 12 hm5C_associated_SNPs_5267 0 0 1 0 0 Ribosome 1 0.500231643916272 1 0.999536712167456 hm5C_site_8200 DeepMRMD:1;iRNA_m5C:0.999536712167456 8201 chr5 134236089 134236089 1 + G T rs114558517 134236102 + 134236082 134236122 41 GCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGG GCTGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACTTTGG < 41bp 1 0.55277004626402 1 0.055841475725174 experiment 0.89445990747196 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TXNDC15 ENSG00000113621 UTR3 Human protein_coding chr5:134236102 chr5:134236089 . . 0 8 hm5C_associated_SNPs_5268 0 0 1 0 0 Ribosome 1 0.500231643920441 1 0.999536712159118 hm5C_site_8201 DeepMRMD:1;iRNA_m5C:0.999536712159118 8202 chr5 134236100 134236100 1 + T C rs7728726 134236096 + 134236076 134236116 41 CAGCAGGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCA CAGCAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCA < 41bp 1 0.626807109312843 1 0.145778715610504 experiment 0.746385781374313 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TXNDC15 ENSG00000113621 UTR3 Human protein_coding chr5:134236096 chr5:134236100 . . 0 25 hm5C_associated_SNPs_5270 0 0 1 0 0 Ribosome 1 0.50023164432318 1 0.99953671135364 hm5C_site_8202 DeepMRMD:1;iRNA_m5C:0.99953671135364 8203 chr5 134236100 134236100 1 + T C rs7728726 134236102 + 134236082 134236122 41 GCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGG GCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGG < 41bp 1 0.603463863795769 1 0.0828303694725037 experiment 0.793072272408462 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TXNDC15 ENSG00000113621 UTR3 Human protein_coding chr5:134236102 chr5:134236100 . . 0 19 hm5C_associated_SNPs_5271 0 0 1 0 0 Ribosome 1 0.5002312365285 1 0.999537526943001 hm5C_site_8203 DeepMRMD:1;iRNA_m5C:0.999537526943001 8204 chr5 134236100 134236100 1 + T C rs7728726 134236110 + 134236090 134236130 41 CAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAA CAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAA < 41bp 1 0.568767080203754 1 0.313697874546051 experiment 0.862465839592492 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TXNDC15 ENSG00000113621 UTR3 Human protein_coding chr5:134236110 chr5:134236100 . . 0 11 hm5C_associated_SNPs_5273 0 0 1 0 0 Ribosome 1 0.5002316439119 1 0.9995367121762 hm5C_site_8204 DeepMRMD:1;iRNA_m5C:0.9995367121762 8205 chr5 134236100 134236100 1 + T C rs7728726 134236111 + 134236091 134236131 41 AGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAG AGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAG < 41bp 1 0.349513664235874 1 0.254628598690033 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TXNDC15 ENSG00000113621 UTR3 Human protein_coding chr5:134236111 chr5:134236100 . . 0 10 hm5C_associated_SNPs_5274 0 0 1 0 0 Ribosome 1 0.500231643944621 1 0.999536712110758 hm5C_site_8205 DeepMRMD:1;iRNA_m5C:0.999536712110758 8206 chr5 134236100 134236100 1 + T C rs7728726 134236115 + 134236095 134236135 41 GCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGG GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGG < 41bp 1 0.555760467649034 1 0.108138501644135 experiment 0.888479064701932 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TXNDC15 ENSG00000113621 UTR3 Human protein_coding chr5:134236115 chr5:134236100 . . 0 6 hm5C_associated_SNPs_5275 0 0 1 0 0 Ribosome 1 0.500231647206293 1 0.999536705587415 hm5C_site_8206 DeepMRMD:1;iRNA_m5C:0.999536705587415 8207 chr5 135369458 135369458 1 + C T rs368854767 135369452 + 135369432 135369472 41 TCTGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCA TCTGCTGCTTTTGTTTTCAGCCCCAATGTGTGTGCTGTGCA < 41bp 1 0.214974162803004 1 0.271773844957352 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369452 chr5:135369458 synonymous SNV . 0 27 hm5C_associated_SNPs_5276 1 0 1 0 2 Endoplasmic reticulum 1 0.500231643930366 1 0.999536712139267 hm5C_site_8207 DeepMRMD:1;iRNA_m5C:0.999536712139267 Corneal Dystrophy, Dominant Corneal Dystrophy, Dominant 8208 chr5 135369458 135369458 1 + C T rs368854767 135369453 + 135369433 135369473 41 CTGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAG CTGCTGCTTTTGTTTTCAGCCCCAATGTGTGTGCTGTGCAG < 41bp 1 0.24764531086994 1 0.178556323051453 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369453 chr5:135369458 synonymous SNV . 0 26 hm5C_associated_SNPs_5277 1 0 1 0 2 Endoplasmic reticulum 1 0.500232774722664 1 0.999534450554673 hm5C_site_8208 DeepMRMD:1;iRNA_m5C:0.999534450554673 Corneal Dystrophy, Dominant Corneal Dystrophy, Dominant 8209 chr5 135369458 135369458 1 + C T rs368854767 135369454 + 135369434 135369474 41 TGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAGA TGCTGCTTTTGTTTTCAGCCCCAATGTGTGTGCTGTGCAGA < 41bp 1 0.0377317819306982 1 0.0916386246681213 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369454 chr5:135369458 synonymous SNV . 0 25 hm5C_associated_SNPs_5278 1 0 1 0 2 Endoplasmic reticulum 1 0.500231643930821 1 0.999536712138357 hm5C_site_8209 DeepMRMD:1;iRNA_m5C:0.999536712138357 Corneal Dystrophy, Dominant Corneal Dystrophy, Dominant 8210 chr5 135369458 135369458 1 + C T rs368854767 135369455 + 135369435 135369475 41 GCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAGAA GCTGCTTTTGTTTTCAGCCCCAATGTGTGTGCTGTGCAGAA < 41bp 1 0.134768456241057 1 0.14002537727356 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369455 chr5:135369458 synonymous SNV . 0 24 hm5C_associated_SNPs_5279 1 0 1 0 2 Endoplasmic reticulum 1 0.500231565725747 1 0.999536868548506 hm5C_site_8210 DeepMRMD:1;iRNA_m5C:0.999536868548506 Corneal Dystrophy, Dominant Corneal Dystrophy, Dominant 8211 chr5 137518907 137518907 1 + G A rs139271096 137518909 + 137518889 137518929 41 TGCCCCACTACCTGTCCCGGCAAACATTCGCTTCTCCATCT TGCCCCACTACCTGTCCCAGCAAACATTCGCTTCTCCATCT < 41bp 1 0.248044359552315 1 0.126286625862122 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF20A ENSG00000112984 CDS Human protein_coding chr5:137518909 chr5:137518907 synonymous SNV . 0 19 hm5C_associated_SNPs_5280 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8211 DeepMRMD:1;iRNA_m5C:0.999536712157815 8212 chr5 137680848 137680848 1 + G C rs140173423 137680844 + 137680824 137680864 41 CAGTGGTGGAGGGGGTGGGCCGCAGGTGCCTCACCAGAGCC CAGTGGTGGAGGGGGTGGGCCGCACGTGCCTCACCAGAGCC < 41bp 1 0.422665621858666 1 0.402560621500015 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680844 chr5:137680848 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_5282 0 0 0 0 0 chromatin 1 0.500231643921083 1 0.999536712157834 hm5C_site_8212 DeepMRMD:1;iRNA_m5C:0.999536712157834 8213 chr5 137781792 137781792 1 + G A rs4835795 137781790 + 137781770 137781810 41 CAATCCGCTTCTCAGAGGTCCTGTCGTGTTTCCACTGCTCG CAATCCGCTTCTCAGAGGTCCTATCGTGTTTCCACTGCTCG < 41bp 1 0.0587065075836669 1 0.0673220455646515 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control REEP2 ENSG00000132563 UTR3 Human protein_coding chr5:137781790 chr5:137781792 . . 0 23 hm5C_associated_SNPs_5283 0 0 1 0 0 exosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_8213 DeepMRMD:1;iRNA_m5C:0.999536712157812 8214 chr5 138614124 138614124 1 + T C rs191189910 138614130 + 138614110 138614150 41 ATTCATTCCAACATTGACTACCTCCTCTGTGCCAGGCCTGT ATTCATTCCAACATCGACTACCTCCTCTGTGCCAGGCCTGT < 41bp 1 0.00498324965140121 1 0.0182152390480042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNHG4 ENSG00000015479 intronic Human protein_coding chr5:138614130 chr5:138614124 . . 0 15 hm5C_associated_SNPs_5285 0 0 1 24 1 unknown 1 0.500234688722469 1 0.999530622555062 hm5C_site_8214 DeepMRMD:1;iRNA_m5C:0.999530622555062 8215 chr5 138614470 138614470 1 + T C rs138489295 138614475 + 138614455 138614495 41 CTGTTTCAGGAATCATCCAGCGGTTGTCAGCTATCCAGGCT CTGTTTCAGGAATCACCCAGCGGTTGTCAGCTATCCAGGCT < 41bp 1 0.1140789720927 1 0.461465895175934 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORA74A ENSG00000200959 ncRNA_exonic Human snoRNA chr5:138614475 chr5:138614470 . . 0 16 hm5C_associated_SNPs_5286 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8215 DeepMRMD:1;iRNA_m5C:0.999536712157815 8216 chr5 138614470 138614470 1 + T C rs138489295 138614489 + 138614469 138614509 41 ATCCAGCGGTTGTCAGCTATCCAGGCTCATGTGGTGCCTGT ACCCAGCGGTTGTCAGCTATCCAGGCTCATGTGGTGCCTGT < 41bp 1 0.421521542931998 1 0.955312609672546 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA74A ENSG00000200959 ncRNA_exonic Human snoRNA chr5:138614489 chr5:138614470 . . 0 2 hm5C_associated_SNPs_5287 0 0 1 0 0 unknown 1 0.500231643919478 0.0893747806549079 0.999536712161045 hm5C_site_8216 DeepMRMD:0.0893747806549079;iRNA_m5C:0.999536712161045 8217 chr5 138665490 138665490 1 + A G rs185734839 138665507 + 138665487 138665527 41 GAAACATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCAT GAAGCATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCAT < 41bp 1 0.397253430045439 1 0.275183856487274 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MATR3 ENSG00000015479 UTR3 Human protein_coding chr5:138665507 chr5:138665490 . . 0 4 hm5C_associated_SNPs_5288 1 0 1 4 0 Nucleus 1 0.500231643916728 1 0.999536712166545 hm5C_site_8217 DeepMRMD:1;iRNA_m5C:0.999536712166545 Distal myopathy Distal myopathy 8218 chr5 138665518 138665518 1 + A G rs190578145 138665507 + 138665487 138665527 41 GAAACATTCCATGTTTTAATCTGAGCCTTGCAGACTTTCAT GAAACATTCCATGTTTTAATCTGAGCCTTGCGGACTTTCAT < 41bp 1 0.396619931244116 1 0.195142477750778 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MATR3 ENSG00000015479 UTR3 Human protein_coding chr5:138665507 chr5:138665518 . . 0 32 hm5C_associated_SNPs_5289 0 0 1 0 0 Nucleus 1 0.500231643718924 1 0.999536712562153 hm5C_site_8218 DeepMRMD:1;iRNA_m5C:0.999536712562153 8219 chr5 139494087 139494087 1 + C T rs149139260 139494074 + 139494054 139494094 41 CAAGAGCCGCCTTACTCTCTCCATGTCAGTGGCCGTGGAGT CAAGAGCCGCCTTACTCTCTCCATGTCAGTGGCTGTGGAGT < 41bp 1 0.195618704078604 1 0.287203729152679 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PURA ENSG00000185129 CDS Human protein_coding chr5:139494074 chr5:139494087 synonymous SNV . 0 34 hm5C_associated_SNPs_5290 0 0 1 0 0 Ribosome 1 0.500231235012159 1 0.999537529975681 hm5C_site_8219 DeepMRMD:1;iRNA_m5C:0.999537529975681 8220 chr5 139820696 139820696 1 + T C rs534783218 139820688 + 139820668 139820708 41 TAGATATTGTGAAATTATTACTTCTTCATGATGCTGATGTC TAGATATTGTGAAATTATTACTTCTTCACGATGCTGATGTC < 41bp 1 0.0971023626489117 1 0.20170670747757 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139820688 chr5:139820696 synonymous SNV . 0 29 hm5C_associated_SNPs_5291 0 0 1 0 1 unknown 1 0.500231644087818 1 0.999536711824365 hm5C_site_8220 DeepMRMD:1;iRNA_m5C:0.999536711824365 8221 chr5 139887565 139887565 1 + T C rs114577754 139887579 + 139887559 139887599 41 AGCCAATGTTGAACATAGGGCAAAGGTAAGCATTTTTTACT AGCCAACGTTGAACATAGGGCAAAGGTAAGCATTTTTTACT < 41bp 1 0.174084728430029 1 0.175607442855835 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139887579 chr5:139887565 synonymous SNV . 0 7 hm5C_associated_SNPs_5292 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8221 DeepMRMD:1;iRNA_m5C:0.999536712157815 8222 chr5 140050076 140050076 1 + G A rs551236986 140050056 + 140050036 140050076 41 CAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAG CAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAA < 41bp 1 0.44707937243546 1 0.151370257139206 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control WDR55 ENSG00000120314 UTR3 Human protein_coding chr5:140050056 chr5:140050076 . . 0 41 hm5C_associated_SNPs_5294 0 0 0 0 0 Ribosome 1 0.500234015273934 1 0.999531969452132 hm5C_site_8222 DeepMRMD:1;iRNA_m5C:0.999531969452132 8223 chr5 140050076 140050076 1 + G A rs551236986 140050057 + 140050037 140050077 41 AATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGG AATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAAG < 41bp 1 0.267215475173378 1 0.381608128547668 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control WDR55 ENSG00000120314 UTR3 Human protein_coding chr5:140050057 chr5:140050076 . . 0 40 hm5C_associated_SNPs_5295 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8223 DeepMRMD:1;iRNA_m5C:0.999536712157815 8224 chr5 140050076 140050076 1 + G A rs551236986 140050058 + 140050038 140050078 41 ATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGT ATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAAGT < 41bp 1 0.595679949930625 1 0.267640113830566 experiment 0.80864010013875 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control WDR55 ENSG00000120314 UTR3 Human protein_coding chr5:140050058 chr5:140050076 . . 0 39 hm5C_associated_SNPs_5296 0 0 0 0 0 Ribosome 1 0.50023477674652 1 0.99953044650696 hm5C_site_8224 DeepMRMD:1;iRNA_m5C:0.99953044650696 8225 chr5 140050076 140050076 1 + G A rs551236986 140050081 + 140050061 140050101 41 GTAGCTGGGATTACAGGTGTCTGCCACCATGCCAGGCTAAT GTAGCTGGGATTACAAGTGTCTGCCACCATGCCAGGCTAAT < 41bp 1 0.310591503611788 1 0.0681896805763245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR55 ENSG00000120314 UTR3 Human protein_coding chr5:140050081 chr5:140050076 . . 0 16 hm5C_associated_SNPs_5297 0 0 0 0 0 Ribosome 1 0.500231647239374 1 0.999536705521252 hm5C_site_8225 DeepMRMD:1;iRNA_m5C:0.999536705521252 8226 chr5 140050076 140050076 1 + G A rs551236986 140050084 + 140050064 140050104 41 GCTGGGATTACAGGTGTCTGCCACCATGCCAGGCTAATTTT GCTGGGATTACAAGTGTCTGCCACCATGCCAGGCTAATTTT < 41bp 1 0.342911501926214 1 0.0651701986789703 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR55 ENSG00000120314 UTR3 Human protein_coding chr5:140050084 chr5:140050076 . . 0 13 hm5C_associated_SNPs_5298 0 0 0 0 0 Ribosome 1 0.500231643921153 1 0.999536712157694 hm5C_site_8226 DeepMRMD:1;iRNA_m5C:0.999536712157694 8227 chr5 140050076 140050076 1 + G A rs551236986 140050085 + 140050065 140050105 41 CTGGGATTACAGGTGTCTGCCACCATGCCAGGCTAATTTTT CTGGGATTACAAGTGTCTGCCACCATGCCAGGCTAATTTTT < 41bp 1 0.688968995542589 1 0.853719532489777 experiment 0.622062008914821 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR55 ENSG00000120314 UTR3 Human protein_coding chr5:140050085 chr5:140050076 . . 0 12 hm5C_associated_SNPs_5299 0 0 0 0 0 Ribosome 1 0.500247324771856 0.292560935020446 0.999505350456288 hm5C_site_8227 DeepMRMD:0.292560935020446;iRNA_m5C:0.999505350456288 8228 chr5 140098527 140098527 1 + G T rs181172383 140098517 + 140098497 140098537 41 GGAGATAGCCTCTGGGCTGGCTTTAGCTCAGCGGTTACTTC GGAGATAGCCTCTGGGCTGGCTTTAGCTCATCGGTTACTTC < 41bp 1 0.28802198610014 1 0.0539650619029999 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098517 chr5:140098527 . . 0 31 hm5C_associated_SNPs_5300 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_8228 DeepMRMD:1;iRNA_m5C:0.999536712157812 8229 chr5 140098527 140098527 1 + G T rs181172383 140098523 + 140098503 140098543 41 AGCCTCTGGGCTGGCTTTAGCTCAGCGGTTACTTCGAGTAC AGCCTCTGGGCTGGCTTTAGCTCATCGGTTACTTCGAGTAC < 41bp 1 0.495674097602478 1 0.0906656682491302 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098523 chr5:140098527 . . 0 25 hm5C_associated_SNPs_5301 0 0 1 0 0 unknown 1 0.500231634131782 1 0.999536731736436 hm5C_site_8229 DeepMRMD:1;iRNA_m5C:0.999536731736436 8230 chr5 140098527 140098527 1 + G T rs181172383 140098525 + 140098505 140098545 41 CCTCTGGGCTGGCTTTAGCTCAGCGGTTACTTCGAGTACAT CCTCTGGGCTGGCTTTAGCTCATCGGTTACTTCGAGTACAT < 41bp 1 0.544678755791278 1 0.0960227251052856 experiment 0.910642488417445 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098525 chr5:140098527 . . 0 23 hm5C_associated_SNPs_5302 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_8230 DeepMRMD:1;iRNA_m5C:0.999536712157812 8231 chr5 140098549 140098549 1 + A G rs144771304 140098552 + 140098532 140098572 41 TACTTCGAGTACATTGTAACCACCTCTCTGGGTGGTTCGAG TACTTCGAGTACATTGTGACCACCTCTCTGGGTGGTTCGAG < 41bp 1 0.32784815839814 1 0.0920535922050476 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098552 chr5:140098549 . . 0 18 hm5C_associated_SNPs_5303 0 0 1 0 0 unknown 1 0.500231643251506 1 0.999536713496987 hm5C_site_8231 DeepMRMD:1;iRNA_m5C:0.999536713496987 8232 chr5 140098549 140098549 1 + A G rs144771304 140098557 + 140098537 140098577 41 CGAGTACATTGTAACCACCTCTCTGGGTGGTTCGAGACCCG CGAGTACATTGTGACCACCTCTCTGGGTGGTTCGAGACCCG < 41bp 1 0.498100856719143 1 0.642456769943237 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098557 chr5:140098549 . . 0 13 hm5C_associated_SNPs_5304 0 0 1 0 0 unknown 1 0.500234712905446 0.715086460113526 0.999530574189107 hm5C_site_8232 DeepMRMD:0.715086460113526;iRNA_m5C:0.999530574189107 8233 chr5 140098555 140098555 1 + C G rs73273342 140098552 + 140098532 140098572 41 TACTTCGAGTACATTGTAACCACCTCTCTGGGTGGTTCGAG TACTTCGAGTACATTGTAACCACGTCTCTGGGTGGTTCGAG < 41bp 1 0.590690286682347 1 0.282923698425293 experiment 0.818619426635305 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098552 chr5:140098555 . . 0 24 hm5C_associated_SNPs_5305 0 0 1 0 0 unknown 1 0.50023164302076 1 0.999536713958479 hm5C_site_8233 DeepMRMD:1;iRNA_m5C:0.999536713958479 8234 chr5 140098555 140098555 1 + C G rs73273342 140098557 + 140098537 140098577 41 CGAGTACATTGTAACCACCTCTCTGGGTGGTTCGAGACCCG CGAGTACATTGTAACCACGTCTCTGGGTGGTTCGAGACCCG < 41bp 1 0.38052888716599 1 0.642126560211182 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098557 chr5:140098555 . . 0 19 hm5C_associated_SNPs_5306 0 0 1 0 0 unknown 1 0.500231644161662 0.715746879577636 0.999536711676676 hm5C_site_8234 DeepMRMD:0.715746879577636;iRNA_m5C:0.999536711676676 8235 chr5 140098555 140098555 1 + C G rs73273342 140098575 + 140098555 140098595 41 CTCTCTGGGTGGTTCGAGACCCGCGGGTGCTTTCCAGCTCT GTCTCTGGGTGGTTCGAGACCCGCGGGTGCTTTCCAGCTCT < 41bp 1 0.601394433476246 1 0.37421241402626 experiment 0.797211133047508 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098575 chr5:140098555 . . 0 1 hm5C_associated_SNPs_5307 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8235 DeepMRMD:1;iRNA_m5C:0.999536712157815 8236 chr5 140098560 140098560 1 + T C rs77337316 140098552 + 140098532 140098572 41 TACTTCGAGTACATTGTAACCACCTCTCTGGGTGGTTCGAG TACTTCGAGTACATTGTAACCACCTCTCCGGGTGGTTCGAG < 41bp 1 0.417619362498134 1 0.207044959068298 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098552 chr5:140098560 . . 0 29 hm5C_associated_SNPs_5308 0 0 1 0 0 unknown 1 0.500231769056545 1 0.99953646188691 hm5C_site_8236 DeepMRMD:1;iRNA_m5C:0.99953646188691 8237 chr5 140098560 140098560 1 + T C rs77337316 140098557 + 140098537 140098577 41 CGAGTACATTGTAACCACCTCTCTGGGTGGTTCGAGACCCG CGAGTACATTGTAACCACCTCTCCGGGTGGTTCGAGACCCG < 41bp 1 0.63333993541863 1 0.799658298492432 experiment 0.73332012916274 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098557 chr5:140098560 . . 0 24 hm5C_associated_SNPs_5309 0 0 1 0 0 unknown 1 0.500231643981166 0.400683403015136 0.999536712037669 hm5C_site_8237 DeepMRMD:0.400683403015136;iRNA_m5C:0.999536712037669 8238 chr5 140098560 140098560 1 + T C rs77337316 140098575 + 140098555 140098595 41 CTCTCTGGGTGGTTCGAGACCCGCGGGTGCTTTCCAGCTCT CTCTCCGGGTGGTTCGAGACCCGCGGGTGCTTTCCAGCTCT < 41bp 1 0.583870966280003 1 0.471786946058273 experiment 0.832258067439995 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098575 chr5:140098560 . . 0 6 hm5C_associated_SNPs_5310 0 0 1 0 0 unknown 1 0.500231506444343 1 0.999536987111314 hm5C_site_8238 DeepMRMD:1;iRNA_m5C:0.999536987111314 8239 chr5 140098596 140098596 1 + T C rs12188417 140098584 + 140098564 140098604 41 TGGTTCGAGACCCGCGGGTGCTTTCCAGCTCTTTTACTGCT TGGTTCGAGACCCGCGGGTGCTTTCCAGCTCTCTTACTGCT < 41bp 1 0.0773554498309179 1 0.0137845575809479 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098584 chr5:140098596 . . 0 33 hm5C_associated_SNPs_5311 0 0 1 0 0 unknown 1 0.500231278535104 1 0.999537442929792 hm5C_site_8239 DeepMRMD:1;iRNA_m5C:0.999537442929792 8240 chr5 140098596 140098596 1 + T C rs12188417 140098588 + 140098568 140098608 41 TCGAGACCCGCGGGTGCTTTCCAGCTCTTTTACTGCTGAAG TCGAGACCCGCGGGTGCTTTCCAGCTCTCTTACTGCTGAAG < 41bp 1 0.24963697886543 1 0.802454173564911 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098588 chr5:140098596 . . 0 29 hm5C_associated_SNPs_5312 0 0 1 0 0 unknown 1 0.50023164476323 0.395091652870178 0.99953671047354 hm5C_site_8240 DeepMRMD:0.395091652870178;iRNA_m5C:0.99953671047354 8241 chr5 140098596 140098596 1 + T C rs12188417 140098594 + 140098574 140098614 41 CCCGCGGGTGCTTTCCAGCTCTTTTACTGCTGAAGTTCAGC CCCGCGGGTGCTTTCCAGCTCTCTTACTGCTGAAGTTCAGC < 41bp 1 0.134356254628052 1 0.26275509595871 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-2 ENSG00000202111 ncRNA_exonic Human misc_RNA chr5:140098594 chr5:140098596 . . 0 23 hm5C_associated_SNPs_5313 0 0 1 0 0 unknown 1 0.500231647820008 1 0.999536704359983 hm5C_site_8241 DeepMRMD:1;iRNA_m5C:0.999536704359983 8242 chr5 140105747 140105747 1 + T C rs559442132 140105746 + 140105726 140105766 41 ATCCGAAAGCAACCTCTGGGCTGGCTTTAGCTCAGCGGTTA ATCCGAAAGCAACCTCTGGGCCGGCTTTAGCTCAGCGGTTA < 41bp 1 0.361752220201389 1 0.249687969684601 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-3 ENSG00000202515 ncRNA_exonic Human misc_RNA chr5:140105746 chr5:140105747 . . 0 22 hm5C_associated_SNPs_5314 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8242 DeepMRMD:1;iRNA_m5C:0.999536712157815 8243 chr5 140105747 140105747 1 + T C rs559442132 140105750 + 140105730 140105770 41 GAAAGCAACCTCTGGGCTGGCTTTAGCTCAGCGGTTACTTC GAAAGCAACCTCTGGGCCGGCTTTAGCTCAGCGGTTACTTC < 41bp 1 0.143369883216649 1 0.0455813407897949 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target VTRNA1-3 ENSG00000202515 ncRNA_exonic Human misc_RNA chr5:140105750 chr5:140105747 . . 0 18 hm5C_associated_SNPs_5315 0 0 1 0 0 unknown 1 0.500231641714318 1 0.999536716571364 hm5C_site_8243 DeepMRMD:1;iRNA_m5C:0.999536716571364 8244 chr5 140105747 140105747 1 + T C rs559442132 140105756 + 140105736 140105776 41 AACCTCTGGGCTGGCTTTAGCTCAGCGGTTACTTCGCGTGT AACCTCTGGGCCGGCTTTAGCTCAGCGGTTACTTCGCGTGT < 41bp 1 0.605610646929489 1 0.139523059129715 experiment 0.788778706141023 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target VTRNA1-3 ENSG00000202515 ncRNA_exonic Human misc_RNA chr5:140105756 chr5:140105747 . . 0 12 hm5C_associated_SNPs_5316 0 0 1 0 0 unknown 1 0.500231643906629 1 0.999536712186742 hm5C_site_8244 DeepMRMD:1;iRNA_m5C:0.999536712186742 8245 chr5 140105747 140105747 1 + T C rs559442132 140105767 + 140105747 140105787 41 TGGCTTTAGCTCAGCGGTTACTTCGCGTGTCATCAAACCAC CGGCTTTAGCTCAGCGGTTACTTCGCGTGTCATCAAACCAC < 41bp 1 0.27247189585316 1 0.375561147928238 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|27356879;GSE66010;miCLIP;HEK293;Control VTRNA1-3 ENSG00000202515 ncRNA_exonic Human misc_RNA chr5:140105767 chr5:140105747 . . 0 1 hm5C_associated_SNPs_5317 0 0 1 0 0 unknown 1 0.500231643921098 1 0.999536712157804 hm5C_site_8245 DeepMRMD:1;iRNA_m5C:0.999536712157804 8246 chr5 140105812 140105812 1 + G A rs73273380 140105807 + 140105787 140105827 41 CCTCTCTGGGTTGTTCGAGACCCGCGGGCGCTCTCCAGCCC CCTCTCTGGGTTGTTCGAGACCCGCAGGCGCTCTCCAGCCC < 41bp 1 0.472951114817064 1 0.0938428938388824 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target VTRNA1-3 ENSG00000202515 ncRNA_exonic Human misc_RNA chr5:140105807 chr5:140105812 . . 0 26 hm5C_associated_SNPs_5318 0 0 1 0 0 unknown 1 0.500231676720107 1 0.999536646559786 hm5C_site_8246 DeepMRMD:1;iRNA_m5C:0.999536646559786 8247 chr5 140105812 140105812 1 + G A rs73273380 140105815 + 140105795 140105835 41 GGTTGTTCGAGACCCGCGGGCGCTCTCCAGCCCTCTTACTG GGTTGTTCGAGACCCGCAGGCGCTCTCCAGCCCTCTTACTG < 41bp 1 0.20154906610574 1 0.0407235622406006 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target VTRNA1-3 ENSG00000202515 ncRNA_exonic Human misc_RNA chr5:140105815 chr5:140105812 . . 0 18 hm5C_associated_SNPs_5321 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8247 DeepMRMD:1;iRNA_m5C:0.999536712157815 8248 chr5 140105812 140105812 1 + G A rs73273380 140105817 + 140105797 140105837 41 TTGTTCGAGACCCGCGGGCGCTCTCCAGCCCTCTTACTGCT TTGTTCGAGACCCGCAGGCGCTCTCCAGCCCTCTTACTGCT < 41bp 1 0.13079196159126 1 0.0245522260665894 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target VTRNA1-3 ENSG00000202515 ncRNA_exonic Human misc_RNA chr5:140105817 chr5:140105812 . . 0 16 hm5C_associated_SNPs_5322 0 0 1 0 0 unknown 1 0.500231644441622 1 0.999536711116756 hm5C_site_8248 DeepMRMD:1;iRNA_m5C:0.999536711116756 8249 chr5 140105812 140105812 1 + G A rs73273380 140105821 + 140105801 140105841 41 TCGAGACCCGCGGGCGCTCTCCAGCCCTCTTACTGCTGAAG TCGAGACCCGCAGGCGCTCTCCAGCCCTCTTACTGCTGAAG < 41bp 1 0.192328827020275 1 0.814488232135773 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-3 ENSG00000202515 ncRNA_exonic Human misc_RNA chr5:140105821 chr5:140105812 . . 0 12 hm5C_associated_SNPs_5323 0 0 1 0 0 unknown 1 0.500231641740974 0.371023535728454 0.999536716518052 hm5C_site_8249 DeepMRMD:0.371023535728454;iRNA_m5C:0.999536716518052 8250 chr5 140105812 140105812 1 + G A rs73273380 140105822 + 140105802 140105842 41 CGAGACCCGCGGGCGCTCTCCAGCCCTCTTACTGCTGAAGT CGAGACCCGCAGGCGCTCTCCAGCCCTCTTACTGCTGAAGT < 41bp 1 0.285820056519235 1 0.68761533498764 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-3 ENSG00000202515 ncRNA_exonic Human misc_RNA chr5:140105822 chr5:140105812 . . 0 11 hm5C_associated_SNPs_5324 0 0 1 0 0 unknown 1 0.500231643921422 0.62476933002472 0.999536712157157 hm5C_site_8250 DeepMRMD:0.62476933002472;iRNA_m5C:0.999536712157157 8251 chr5 140105812 140105812 1 + G A rs73273380 140105825 + 140105805 140105845 41 GACCCGCGGGCGCTCTCCAGCCCTCTTACTGCTGAAGTTCA GACCCGCAGGCGCTCTCCAGCCCTCTTACTGCTGAAGTTCA < 41bp 1 0.0599361974763698 1 0.100354254245758 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-3 ENSG00000202515 ncRNA_exonic Human misc_RNA chr5:140105825 chr5:140105812 . . 0 8 hm5C_associated_SNPs_5325 0 0 1 0 0 unknown 1 0.500228900790432 1 0.999542198419135 hm5C_site_8251 DeepMRMD:1;iRNA_m5C:0.999542198419135 8252 chr5 140105812 140105812 1 + G A rs73273380 140105826 + 140105806 140105846 41 ACCCGCGGGCGCTCTCCAGCCCTCTTACTGCTGAAGTTCAG ACCCGCAGGCGCTCTCCAGCCCTCTTACTGCTGAAGTTCAG < 41bp 1 0.0872425266758277 1 0.194388002157211 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-3 ENSG00000202515 ncRNA_exonic Human misc_RNA chr5:140105826 chr5:140105812 . . 0 7 hm5C_associated_SNPs_5326 0 0 1 0 0 unknown 1 0.500300569278898 1 0.999398861442204 hm5C_site_8252 DeepMRMD:1;iRNA_m5C:0.999398861442204 8253 chr5 140105812 140105812 1 + G A rs73273380 140105829 + 140105809 140105849 41 CGCGGGCGCTCTCCAGCCCTCTTACTGCTGAAGTTCAGCTC CGCAGGCGCTCTCCAGCCCTCTTACTGCTGAAGTTCAGCTC < 41bp 1 0.154894433416235 1 0.389580309391022 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VTRNA1-3 ENSG00000202515 ncRNA_exonic Human misc_RNA chr5:140105829 chr5:140105812 . . 0 4 hm5C_associated_SNPs_5327 0 0 1 0 0 unknown 1 0.500231643921103 1 0.999536712157794 hm5C_site_8253 DeepMRMD:1;iRNA_m5C:0.999536712157794 8254 chr5 140347674 140347674 1 + C T rs546330069 140347691 + 140347671 140347711 41 AGCCACAGATGGGGGAATACCGCAGCTCACATCCCTGCGTA AGCTACAGATGGGGGAATACCGCAGCTCACATCCCTGCGTA < 41bp 1 0.653408149656269 1 0.901381015777588 experiment 0.693183700687462 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCDHAC2 ENSG00000243232 CDS Human protein_coding chr5:140347691 chr5:140347674 synonymous SNV . 0 4 hm5C_associated_SNPs_5328 0 0 0 0 0 exosome 1 0.500231643883836 0.197237968444824 0.999536712232328 hm5C_site_8254 DeepMRMD:0.197237968444824;iRNA_m5C:0.999536712232328 8255 chr5 140573655 140573655 1 + C T rs17844572 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATCAACGCGGACAATGGCCACCTGTTCGCCCTCAGGTC < 41bp 1 0.276411758387884 1 0.0772004425525665 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573655 synonymous SNV . 0 18 hm5C_associated_SNPs_5329 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8255 DeepMRMD:1;iRNA_m5C:0.999536712157815 8256 chr5 140731334 140731334 1 + G A rs371048978 140731316 + 140731296 140731336 41 GTGACCTGGAGCCGCGGGAGCTGTTGTCCTACGTGTCCGTG GTGACCTGGAGCCGCGGGAGCTGTTGTCCTACGTGTCCATG < 41bp 1 0.214090828228702 1 0.0390665829181671 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHGB1 ENSG00000254221 CDS Human protein_coding chr5:140731316 chr5:140731334 nonsynonymous SNV 0.278 2 39 hm5C_associated_SNPs_5330 0 0 1 0 0 exosome 1 0.500228224910475 1 0.999543550179051 hm5C_site_8256 DeepMRMD:1;iRNA_m5C:0.999543550179051 8257 chr5 140793303 140793303 1 + G A rs189162146 140793307 + 140793287 140793327 41 TCTCCCTAAGAGTTCAGAGCCGTGCCAATGGCGTCAAGTAC TCTCCCTAAGAGTTCAAAGCCGTGCCAATGGCGTCAAGTAC < 41bp 1 0.130314522022334 1 0.247749894857407 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCDHGA10 ENSG00000253846 CDS Human protein_coding chr5:140793307 chr5:140793303 synonymous SNV . 0 17 hm5C_associated_SNPs_5331 0 0 0 0 0 exosome 1 0.500231643922568 1 0.999536712154865 hm5C_site_8257 DeepMRMD:1;iRNA_m5C:0.999536712154865 8258 chr5 140793303 140793303 1 + G A rs189162146 140793311 + 140793291 140793331 41 CCTAAGAGTTCAGAGCCGTGCCAATGGCGTCAAGTACCCGG CCTAAGAGTTCAAAGCCGTGCCAATGGCGTCAAGTACCCGG < 41bp 1 0.0652668416250601 1 0.115999609231949 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCDHGA10 ENSG00000253846 CDS Human protein_coding chr5:140793311 chr5:140793303 synonymous SNV . 0 13 hm5C_associated_SNPs_5332 0 0 0 0 0 exosome 1 0.50023164392118 1 0.99953671215764 hm5C_site_8258 DeepMRMD:1;iRNA_m5C:0.99953671215764 8259 chr5 141353252 141353252 1 + T G rs112321759 141353260 + 141353240 141353280 41 GTCTGTCCAAGGTGGAGAAACCAGGATCTATTTGGATTTGC GTCTGTCCAAGGGGGAGAAACCAGGATCTATTTGGATTTGC < 41bp 1 0.613864797502835 1 0.21190020442009 experiment 0.772270404994331 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141353260 chr5:141353252 synonymous SNV . 0 13 hm5C_associated_SNPs_5333 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8259 DeepMRMD:1;iRNA_m5C:0.999536712157815 8260 chr5 141531833 141531833 1 + C T rs114615467 141531820 + 141531800 141531840 41 TCTGTATGAACACCTGGAAGCAAAATCATAGTGCAAAAATA TCTGTATGAACACCTGGAAGCAAAATCATAGTGTAAAAATA < 41bp 1 0.581411560676116 1 0.168559163808823 experiment 0.837176878647768 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NDFIP1 ENSG00000131507 UTR3 Human protein_coding chr5:141531820 chr5:141531833 . . 0 34 hm5C_associated_SNPs_5334 0 0 1 7 0 Ribosome 1 0.500231640005691 1 0.999536719988618 hm5C_site_8260 DeepMRMD:1;iRNA_m5C:0.999536719988618 8261 chr5 142150304 142150304 1 + C G rs576703735 142150299 + 142150279 142150319 41 CCCGGGCCCCGGCGGAGGCGCGCCCCCCGGCTGGGCGCCGC CCCGGGCCCCGGCGGAGGCGCGCCCGCCGGCTGGGCGCCGC < 41bp 1 0.634801481227348 1 0.54688572883606 experiment 0.730397037545305 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARHGAP26 ENSG00000145819 UTR5 Human protein_coding chr5:142150299 chr5:142150304 . . 0 26 hm5C_associated_SNPs_5335 0 0 0 0 0 Nucleus 1 0.500231645485936 0.90622854232788 0.999536709028128 hm5C_site_8261 DeepMRMD:0.90622854232788;iRNA_m5C:0.999536709028128 8262 chr5 145613191 145613191 1 + G A rs199892617 145613188 + 145613168 145613208 41 ATGCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCC ATGCCAGGTCCAGGCCCAGGCCCAGGCCCAGGTCCAGGCCC < 41bp 1 0.67567396849809 1 0.393262803554535 experiment 0.64865206300382 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613188 chr5:145613191 synonymous SNV . 0 24 hm5C_associated_SNPs_5336 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8262 DeepMRMD:1;iRNA_m5C:0.999536712157815 8263 chr5 145613191 145613191 1 + G A rs199892617 145613189 + 145613169 145613209 41 TGCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCCA TGCCAGGTCCAGGCCCAGGCCCAGGCCCAGGTCCAGGCCCA < 41bp 1 0.680620746294909 1 0.3482406437397 experiment 0.638758507410182 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613189 chr5:145613191 synonymous SNV . 0 23 hm5C_associated_SNPs_5337 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8263 DeepMRMD:1;iRNA_m5C:0.999536712157815 8264 chr5 145613191 145613191 1 + G A rs199892617 145613190 + 145613170 145613210 41 GCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCCAG GCCAGGTCCAGGCCCAGGCCCAGGCCCAGGTCCAGGCCCAG < 41bp 1 0.697050885678341 1 0.833927154541016 experiment 0.605898228643317 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613190 chr5:145613191 synonymous SNV . 0 22 hm5C_associated_SNPs_5338 0 0 0 0 0 Nucleus 1 0.500231643921092 0.332145690917968 0.999536712157815 hm5C_site_8264 DeepMRMD:0.332145690917968;iRNA_m5C:0.999536712157815 8265 chr5 145613191 145613191 1 + G A rs199892617 145613195 + 145613175 145613215 41 GTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCCAGGCCCG GTCCAGGCCCAGGCCCAGGCCCAGGTCCAGGCCCAGGCCCG < 41bp 1 0.694986446181699 1 0.329057633876801 experiment 0.610027107636601 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613195 chr5:145613191 synonymous SNV . 0 17 hm5C_associated_SNPs_5340 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8265 DeepMRMD:1;iRNA_m5C:0.999536712157815 8266 chr5 148206320 148206320 1 + G A rs35883484 148206300 + 148206280 148206320 41 ACCACAGCCGCTGAATGAGGCTTCCAGGCGTCCGCTCGCGG ACCACAGCCGCTGAATGAGGCTTCCAGGCGTCCGCTCGCGA < 41bp 1 0.215146947366583 1 0.0769192576408386 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADRB2 ENSG00000169252 UTR5 Human protein_coding chr5:148206300 chr5:148206320 . . 0 41 hm5C_associated_SNPs_5341 0 0 0 0 0 Cytoplasm 1 0.500229625701685 1 0.999540748596629 hm5C_site_8266 DeepMRMD:1;iRNA_m5C:0.999540748596629 8267 chr5 148725062 148725062 1 + A C rs115212986 148725078 + 148725058 148725098 41 TCGCAGCAAGTGCGCGTGCGCTGCCTCTCAGCCCAAATTGG TCGCCGCAAGTGCGCGTGCGCTGCCTCTCAGCCCAAATTGG < 41bp 1 0.621146428596823 1 0.083253026008606 experiment 0.757707142806354 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRPEL2 ENSG00000164284 UTR5 Human protein_coding chr5:148725078 chr5:148725062 . . 0 5 hm5C_associated_SNPs_5343 0 0 1 0 0 Cytosol 1 0.500231643920968 1 0.999536712158064 hm5C_site_8267 DeepMRMD:1;iRNA_m5C:0.999536712158064 8268 chr5 149212853 149212853 1 + G C rs147798578 149212851 + 149212831 149212871 41 TCACCCAAGAGCACCGGGCCCAGACCAAGCCTGCGCCCACT TCACCCAAGAGCACCGGGCCCACACCAAGCCTGCGCCCACT < 41bp 1 0.199945299749603 1 0.0229207277297974 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149212851 chr5:149212853 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_5344 0 0 0 0 0 chromatin 1 0.500231610648583 1 0.999536778702834 hm5C_site_8268 DeepMRMD:1;iRNA_m5C:0.999536778702834 8269 chr5 149361966 149361966 1 + C T rs1046710 149361950 + 149361930 149361970 41 CCATTCCTGTCCTTAAGGCACAGTCTCATCAGAAGTCTAAT CCATTCCTGTCCTTAAGGCACAGTCTCATCAGAAGTTTAAT < 41bp 1 0.112412616179156 1 0.0572954118251801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC26A2 ENSG00000155850 UTR3 Human protein_coding chr5:149361950 chr5:149361966 . . 0 37 hm5C_associated_SNPs_5345 5 0 1 0 0 Endoplasmic reticulum 1 0.500231605185847 1 0.999536789628307 hm5C_site_8269 DeepMRMD:1;iRNA_m5C:0.999536789628307 Diastrophic dysplasia Diastrophic dysplasia 8270 chr5 149361966 149361966 1 + C T rs1046710 149361954 + 149361934 149361974 41 TCCTGTCCTTAAGGCACAGTCTCATCAGAAGTCTAATACCT TCCTGTCCTTAAGGCACAGTCTCATCAGAAGTTTAATACCT < 41bp 1 0.277266079412691 1 0.242406517267227 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC26A2 ENSG00000155850 UTR3 Human protein_coding chr5:149361954 chr5:149361966 . . 0 33 hm5C_associated_SNPs_5346 5 0 1 0 0 Endoplasmic reticulum 1 0.500231643556645 1 0.99953671288671 hm5C_site_8270 DeepMRMD:1;iRNA_m5C:0.99953671288671 Diastrophic dysplasia Diastrophic dysplasia 8271 chr5 149363988 149363988 1 + C T rs28451300 149363970 + 149363950 149363990 41 CAGTGGCTCATGCCTGTAATCCCAGCACGTTGGGAGGCCGA CAGTGGCTCATGCCTGTAATCCCAGCACGTTGGGAGGCTGA < 41bp 1 0.453244493300718 1 0.191737771034241 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC26A2 ENSG00000155850 UTR3 Human protein_coding chr5:149363970 chr5:149363988 . . 0 39 hm5C_associated_SNPs_5347 5 0 0 0 0 Endoplasmic reticulum 1 0.500231643884906 1 0.999536712230189 hm5C_site_8271 DeepMRMD:1;iRNA_m5C:0.999536712230189 Diastrophic dysplasia Diastrophic dysplasia 8272 chr5 149363988 149363988 1 + C T rs28451300 149363971 + 149363951 149363991 41 AGTGGCTCATGCCTGTAATCCCAGCACGTTGGGAGGCCGAG AGTGGCTCATGCCTGTAATCCCAGCACGTTGGGAGGCTGAG < 41bp 1 0.338237543066977 1 0.0892066061496735 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC26A2 ENSG00000155850 UTR3 Human protein_coding chr5:149363971 chr5:149363988 . . 0 38 hm5C_associated_SNPs_5348 5 0 0 0 0 Endoplasmic reticulum 1 0.500231626013276 1 0.999536747973449 hm5C_site_8272 DeepMRMD:1;iRNA_m5C:0.999536747973449 Diastrophic dysplasia Diastrophic dysplasia 8273 chr5 149364096 149364096 1 + C T rs557400349 149364094 + 149364074 149364114 41 ATTAGCGGGGCATGGTGGCACGCGCCTGTAGTCCCAGCTAC ATTAGCGGGGCATGGTGGCACGTGCCTGTAGTCCCAGCTAC < 41bp 1 0.67733618515715 1 0.336059987545013 experiment 0.6453276296857 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC26A2 ENSG00000155850 UTR3 Human protein_coding chr5:149364094 chr5:149364096 . . 0 23 hm5C_associated_SNPs_5349 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643919295 1 0.99953671216141 hm5C_site_8273 DeepMRMD:1;iRNA_m5C:0.99953671216141 8274 chr5 149406356 149406356 1 + C A rs61739331 149406376 + 149406356 149406396 41 CATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG AATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG < 41bp 1 0.51350770647061 1 0.305736035108566 experiment 0.972984587058779 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406376 chr5:149406356 synonymous SNV . 0 1 hm5C_associated_SNPs_5350 0 0 1 0 2 Ribosome 1 0.500231643918291 1 0.999536712163418 hm5C_site_8274 DeepMRMD:1;iRNA_m5C:0.999536712163418 8275 chr5 149406413 149406413 1 + G A rs147489392 149406393 + 149406373 149406413 41 CAGCCCCAGTTAACGTGGGGCGAGGCAGCAGCATGGGACTG CAGCCCCAGTTAACGTGGGGCGAGGCAGCAGCATGGGACTA < 41bp 1 0.400701853457963 1 0.533246397972107 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406393 chr5:149406413 synonymous SNV . 0 41 hm5C_associated_SNPs_5351 0 0 1 0 1 Ribosome 1 0.500231643921261 0.933507204055786 0.999536712157478 hm5C_site_8275 DeepMRMD:0.933507204055786;iRNA_m5C:0.999536712157478 8276 chr5 149751756 149751756 1 + G A rs182776703 149751738 + 149751718 149751758 41 CAAGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT CAAGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGAAT < 41bp 1 0.310915598003288 1 0.657943069934845 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751738 chr5:149751756 nonsynonymous SNV 0.197 0 39 hm5C_associated_SNPs_5352 0 0 1 0 1 Nucleus 1 0.500231643933876 0.68411386013031 0.999536712132248 hm5C_site_8276 DeepMRMD:0.68411386013031;iRNA_m5C:0.999536712132248 8277 chr5 149753894 149753894 1 + G A rs144327167 149753906 + 149753886 149753926 41 GAGCAGCAGCGAGGAGTCATCTGACAGTGAGGAGGAGACGC GAGCAGCAACGAGGAGTCATCTGACAGTGAGGAGGAGACGC < 41bp 1 0.368056608141032 1 0.315954685211182 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149753906 chr5:149753894 nonsynonymous SNV 0.048 3 9 hm5C_associated_SNPs_5354 2 0 1 0 1 Nucleus 1 0.50023164390512 1 0.99953671218976 hm5C_site_8277 DeepMRMD:1;iRNA_m5C:0.99953671218976 Treacher Collins syndrome 1 Treacher Collins syndrome 1 8278 chr5 149754325 149754325 1 + C T rs114326915 149754323 + 149754303 149754343 41 GCGGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGA GCGGGGAAGCGGGAGGAGGACTTGCAGAGCAGCAGCGAGGA < 41bp 1 0.30866854516966 1 0.0967078804969788 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754323 chr5:149754325 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_5355 1 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_8278 DeepMRMD:1;iRNA_m5C:0.999536712157814 Treacher Collins Syndrome, Dominant Treacher Collins Syndrome, Dominant 8279 chr5 149754325 149754325 1 + C T rs114326915 149754335 + 149754315 149754355 41 GAGGAGGACTCGCAGAGCAGCAGCGAGGAATCGGACAGTGA GAGGAGGACTTGCAGAGCAGCAGCGAGGAATCGGACAGTGA < 41bp 1 0.541664533054368 1 0.219207555055618 experiment 0.916670933891264 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754335 chr5:149754325 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_5356 1 0 1 0 1 Nucleus 1 0.500231625625785 1 0.999536748748431 hm5C_site_8279 DeepMRMD:1;iRNA_m5C:0.999536748748431 Treacher Collins Syndrome, Dominant Treacher Collins Syndrome, Dominant 8280 chr5 149755839 149755839 1 + T G rs140334121 149755829 + 149755809 149755849 41 CCAGAGACCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAG CCAGAGACCAGCAGAGGATTCTTCAAGCAGGGAGGAATCAG < 41bp 1 0.392367422101162 1 0.220952570438385 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755829 chr5:149755839 nonsynonymous SNV 0.519 3 31 hm5C_associated_SNPs_5357 0 0 1 0 1 Nucleus 1 0.500231644523596 1 0.999536710952807 hm5C_site_8280 DeepMRMD:1;iRNA_m5C:0.999536710952807 8281 chr5 149755839 149755839 1 + T G rs140334121 149755836 + 149755816 149755856 41 CCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAGATAGTGA CCAGCAGAGGATTCTTCAAGCAGGGAGGAATCAGATAGTGA < 41bp 1 0.658952086362749 1 0.795298337936401 experiment 0.682095827274501 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755836 chr5:149755839 nonsynonymous SNV 0.519 3 24 hm5C_associated_SNPs_5358 0 0 1 0 1 Nucleus 1 0.500235655676036 0.409403324127198 0.999528688647928 hm5C_site_8281 DeepMRMD:0.409403324127198;iRNA_m5C:0.999528688647928 8282 chr5 149755839 149755839 1 + T G rs140334121 149755847 + 149755827 149755867 41 TTCTTCAAGCAGTGAGGAATCAGATAGTGAGGAAGAGAAGA TTCTTCAAGCAGGGAGGAATCAGATAGTGAGGAAGAGAAGA < 41bp 1 0.393175198170289 1 0.544870376586914 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755847 chr5:149755839 nonsynonymous SNV 0.519 3 13 hm5C_associated_SNPs_5359 0 0 1 0 1 Nucleus 1 0.500231573449255 0.910259246826172 0.99953685310149 hm5C_site_8282 DeepMRMD:0.910259246826172;iRNA_m5C:0.99953685310149 8283 chr5 149755845 149755845 1 + A G rs34796297 149755829 + 149755809 149755849 41 CCAGAGACCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAG CCAGAGACCAGCAGAGGATTCTTCAAGCAGTGAGGAGTCAG < 41bp 1 0.382339311837297 1 0.317437469959259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755829 chr5:149755845 synonymous SNV . 0 37 hm5C_associated_SNPs_5360 2 0 1 0 1 Nucleus 1 0.500231643921053 1 0.999536712157894 hm5C_site_8283 DeepMRMD:1;iRNA_m5C:0.999536712157894 not specified not specified 8284 chr5 149755845 149755845 1 + A G rs34796297 149755836 + 149755816 149755856 41 CCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAGATAGTGA CCAGCAGAGGATTCTTCAAGCAGTGAGGAGTCAGATAGTGA < 41bp 1 0.276537384038836 1 0.242111355066299 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755836 chr5:149755845 synonymous SNV . 0 30 hm5C_associated_SNPs_5361 2 0 1 0 1 Nucleus 1 0.500231645376074 1 0.999536709247852 hm5C_site_8284 DeepMRMD:1;iRNA_m5C:0.999536709247852 not specified not specified 8285 chr5 149755845 149755845 1 + A G rs34796297 149755847 + 149755827 149755867 41 TTCTTCAAGCAGTGAGGAATCAGATAGTGAGGAAGAGAAGA TTCTTCAAGCAGTGAGGAGTCAGATAGTGAGGAAGAGAAGA < 41bp 1 0.286936168945662 1 0.444153875112534 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755847 chr5:149755845 synonymous SNV . 0 19 hm5C_associated_SNPs_5362 2 0 1 0 1 Nucleus 1 0.500231598206334 1 0.999536803587331 hm5C_site_8285 DeepMRMD:1;iRNA_m5C:0.999536803587331 not specified not specified 8286 chr5 149756091 149756091 1 + A G rs149384321 149756110 + 149756090 149756130 41 TACAGTCACCCAGGTGAAAGCTGAAAAGCAGGAAGACTCTG TGCAGTCACCCAGGTGAAAGCTGAAAAGCAGGAAGACTCTG < 41bp 1 0.646929270808856 1 0.410256296396255 experiment 0.706141458382288 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149756110 chr5:149756091 nonsynonymous SNV 0.000 0 2 hm5C_associated_SNPs_5363 0 0 1 0 1 Nucleus 1 0.500231242913618 1 0.999537514172765 hm5C_site_8286 DeepMRMD:1;iRNA_m5C:0.999537514172765 8287 chr5 149772280 149772280 1 + C A rs1136103 149772283 + 149772263 149772303 41 TCCAGTAGGTCCCACCCCCTCCAGGACAGAGACCCTGGTGG TCCAGTAGGTCCCACCCACTCCAGGACAGAGACCCTGGTGG < 41bp 1 0.584625800814109 1 0.846539556980133 experiment 0.830748398371782 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149772283 chr5:149772280 nonsynonymous SNV 0.009 3 18 hm5C_associated_SNPs_5364 0 0 1 0 3 Nucleus 1 0.500231688210088 0.306920886039734 0.999536623579823 hm5C_site_8287 DeepMRMD:0.306920886039734;iRNA_m5C:0.999536623579823 8288 chr5 149900802 149900802 1 + G T rs3733935 149900820 + 149900800 149900840 41 AGGTCTCGGAGGCCAGGATGCCTGCCCTGGCATGCCTCCGG AGTTCTCGGAGGCCAGGATGCCTGCCCTGGCATGCCTCCGG < 41bp 1 0.168414755030193 1 0.238709568977356 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NDST1 ENSG00000070614 UTR5 Human protein_coding chr5:149900820 chr5:149900802 . . 0 3 hm5C_associated_SNPs_5366 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8288 DeepMRMD:1;iRNA_m5C:0.999536712157815 8289 chr5 149900802 149900802 1 + G T rs3733935 149900821 + 149900801 149900841 41 GGTCTCGGAGGCCAGGATGCCTGCCCTGGCATGCCTCCGGA GTTCTCGGAGGCCAGGATGCCTGCCCTGGCATGCCTCCGGA < 41bp 1 0.592311348555628 1 0.407221555709839 experiment 0.815377302888744 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NDST1 ENSG00000070614 UTR5 Human protein_coding chr5:149900821 chr5:149900802 . . 0 2 hm5C_associated_SNPs_5367 0 0 1 0 0 Cytosol 1 0.500231643921098 1 0.999536712157804 hm5C_site_8289 DeepMRMD:1;iRNA_m5C:0.999536712157804 8290 chr5 149925005 149925005 1 + C G rs141935011 149925006 + 149924986 149925026 41 CCCAAAGCCAAGGTCCTGACCATCCTCATCAACCCCGCGGA CCCAAAGCCAAGGTCCTGAGCATCCTCATCAACCCCGCGGA < 41bp 1 0.130212530459463 1 0.0261042416095734 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDST1 ENSG00000070614 CDS Human protein_coding chr5:149925006 chr5:149925005 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_5368 0 0 1 0 1 Cytosol 1 0.500231655532313 1 0.999536688935375 hm5C_site_8290 DeepMRMD:1;iRNA_m5C:0.999536688935375 8291 chr5 149934315 149934315 1 + C T rs533528857 149934305 + 149934285 149934325 41 CTCCCTCACATGGTGCTAGGCTGGGAGCTGCCCTGAGAGCT CTCCCTCACATGGTGCTAGGCTGGGAGCTGTCCTGAGAGCT < 41bp 1 0.611890452095637 1 0.611881613731384 experiment 0.776219095808727 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDST1 ENSG00000070614 UTR3 Human protein_coding chr5:149934305 chr5:149934315 . . 0 31 hm5C_associated_SNPs_5369 0 0 1 0 0 Cytosol 1 0.500231643921092 0.776236772537232 0.999536712157815 hm5C_site_8291 DeepMRMD:0.776236772537232;iRNA_m5C:0.999536712157815 8292 chr5 149935375 149935375 1 + G A rs116406510 149935356 + 149935336 149935376 41 AGCTCCACTTCTCTCTGCCTCTGGCTATGGGAAGGAGCAGG AGCTCCACTTCTCTCTGCCTCTGGCTATGGGAAGGAGCAAG < 41bp 1 0.432425357592297 1 0.889524340629578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDST1 ENSG00000070614 UTR3 Human protein_coding chr5:149935356 chr5:149935375 . . 0 40 hm5C_associated_SNPs_5370 0 0 1 0 0 Cytosol 1 0.500232080792069 0.220951318740844 0.999535838415862 hm5C_site_8292 DeepMRMD:0.220951318740844;iRNA_m5C:0.999535838415862 8293 chr5 149935378 149935378 1 + G A rs115083931 149935398 + 149935378 149935418 41 GGTTGGAAATCCTGTGACAGCAGAGATCTTCTGGATTTTTG AGTTGGAAATCCTGTGACAGCAGAGATCTTCTGGATTTTTG < 41bp 1 0.686120345712802 1 0.40265029668808 experiment 0.627759308574396 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDST1 ENSG00000070614 UTR3 Human protein_coding chr5:149935398 chr5:149935378 . . 0 1 hm5C_associated_SNPs_5371 0 0 1 0 0 Cytosol 1 0.500237050249548 1 0.999525899500903 hm5C_site_8293 DeepMRMD:1;iRNA_m5C:0.999525899500903 8294 chr5 150028796 150028796 1 + C A rs34850457 150028797 + 150028777 150028817 41 AACTTCACTGCACCCCCCACCTACACTGAGACCTTGTCCAC AACTTCACTGCACCCCCCAACTACACTGAGACCTTGTCCAC < 41bp 1 0.562239709178344 1 0.665949940681458 experiment 0.875520581643312 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNPO ENSG00000171992 CDS Human protein_coding chr5:150028797 chr5:150028796 nonsynonymous SNV 0.936 4 20 hm5C_associated_SNPs_5372 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643871726 0.668100118637084 0.999536712256547 hm5C_site_8294 DeepMRMD:0.668100118637084;iRNA_m5C:0.999536712256547 8295 chr5 150030325 150030325 1 + T G rs188861055 150030341 + 150030321 150030361 41 GGTCTGCCTCCTCAGCTGCCCCAGGGGGGCCTCCCTCCTGA GGTCGGCCTCCTCAGCTGCCCCAGGGGGGCCTCCCTCCTGA < 41bp 1 0.361546916107806 1 0.897797465324402 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNPO ENSG00000171992 UTR3 Human protein_coding chr5:150030341 chr5:150030325 . . 0 5 hm5C_associated_SNPs_5373 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921074 0.204405069351196 0.999536712157853 hm5C_site_8295 DeepMRMD:0.204405069351196;iRNA_m5C:0.999536712157853 8296 chr5 150030325 150030325 1 + T G rs188861055 150030342 + 150030322 150030362 41 GTCTGCCTCCTCAGCTGCCCCAGGGGGGCCTCCCTCCTGAG GTCGGCCTCCTCAGCTGCCCCAGGGGGGCCTCCCTCCTGAG < 41bp 1 0.638489790216109 1 0.932746648788452 experiment 0.723020419567783 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control SYNPO ENSG00000171992 UTR3 Human protein_coding chr5:150030342 chr5:150030325 . . 0 4 hm5C_associated_SNPs_5374 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921078 0.134506702423096 0.999536712157843 hm5C_site_8296 DeepMRMD:0.134506702423096;iRNA_m5C:0.999536712157843 8297 chr5 150639409 150639409 1 + A G rs153477 150639408 + 150639388 150639428 41 ACTCTGGAGCCTGACCCCATCATCGTTCCTGGAAATGTGAC ACTCTGGAGCCTGACCCCATCGTCGTTCCTGGAAATGTGAC < 41bp 1 0.573322753939397 1 0.406935214996338 experiment 0.853354492121206 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GM2A ENSG00000196743 CDS Human protein_coding chr5:150639408 chr5:150639409 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_5375 2 0 1 0 1 Endoplasmic reticulum 1 0.500231643893638 1 0.999536712212724 hm5C_site_8297 DeepMRMD:1;iRNA_m5C:0.999536712212724 not specified not specified 8298 chr5 150639412 150639412 1 + G A rs201829650 150639408 + 150639388 150639428 41 ACTCTGGAGCCTGACCCCATCATCGTTCCTGGAAATGTGAC ACTCTGGAGCCTGACCCCATCATCATTCCTGGAAATGTGAC < 41bp 1 0.656903888676491 1 0.364517569541931 experiment 0.686192222647018 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GM2A ENSG00000196743 CDS Human protein_coding chr5:150639408 chr5:150639412 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_5376 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643828474 1 0.999536712343052 hm5C_site_8298 DeepMRMD:1;iRNA_m5C:0.999536712343052 8299 chr5 153755996 153755996 1 + A G rs116636563 153756011 + 153755991 153756031 41 AGCCAATGTCAACTGGCTTCCCCCCTTGCTTGGTAAGGGAG AGCCAGTGTCAACTGGCTTCCCCCCTTGCTTGGTAAGGGAG < 41bp 1 0.0494112691153559 1 0.207721501588821 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153756011 chr5:153755996 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_5377 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8299 DeepMRMD:1;iRNA_m5C:0.999536712157815 8300 chr5 153783753 153783753 1 + C T rs6580076 153783741 + 153783721 153783761 41 TACAGGAAGTATGTGCCCTACAAGGTCCCGGCCGGAGTCAG TACAGGAAGTATGTGCCCTACAAGGTCCCGGCTGGAGTCAG < 41bp 1 0.635852676063672 1 0.239557802677155 experiment 0.728294647872656 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153783741 chr5:153783753 synonymous SNV . 0 33 hm5C_associated_SNPs_5378 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8300 DeepMRMD:1;iRNA_m5C:0.999536712157815 8301 chr5 153797224 153797224 1 + C T rs191203253 153797232 + 153797212 153797252 41 GCTATGGACATGCGGGATATCTCCCCCTGCTCTCTGGGTAT GCTATGGACATGTGGGATATCTCCCCCTGCTCTCTGGGTAT < 41bp 1 0.221749239561106 1 0.461140275001526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAP30L-AS1 ENSG00000245275 ncRNA_intronic Human antisense chr5:153797232 chr5:153797224 . . 0 13 hm5C_associated_SNPs_5379 0 0 1 0 0 unknown 1 0.500231643920042 1 0.999536712159915 hm5C_site_8301 DeepMRMD:1;iRNA_m5C:0.999536712159915 8302 chr5 154194933 154194933 1 + G T rs191135796 154194928 + 154194908 154194948 41 CAAGGCCAAGTTGGTTCAAACTGTTGGAGAACAGAGTTGGC CAAGGCCAAGTTGGTTCAAACTGTTTGAGAACAGAGTTGGC < 41bp 1 0.174957870517996 1 0.0864949822425842 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LARP1 ENSG00000155506 UTR3 Human protein_coding chr5:154194928 chr5:154194933 . . 0 26 hm5C_associated_SNPs_5381 0 0 1 0 0 Cytosol 1 0.500231644667509 1 0.999536710664982 hm5C_site_8302 DeepMRMD:1;iRNA_m5C:0.999536710664982 8303 chr5 154196907 154196907 1 + C T rs555288569 154196902 + 154196882 154196922 41 GAGGAAAACTTGTCATCTGGCTTTGCGGAGAAGGTTCCACC GAGGAAAACTTGTCATCTGGCTTTGTGGAGAAGGTTCCACC < 41bp 1 0.141659107477812 1 0.116380214691162 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARP1 ENSG00000155506 UTR3 Human protein_coding chr5:154196902 chr5:154196907 . . 0 26 hm5C_associated_SNPs_5382 0 0 1 0 0 Cytosol 1 0.500231643005984 1 0.999536713988032 hm5C_site_8303 DeepMRMD:1;iRNA_m5C:0.999536713988032 8304 chr5 156821404 156821404 1 + A G rs61736011 156821418 + 156821398 156821438 41 TTAGCAATGGTTGCCTTAATCAAATGGTCCCATTTTTAACC TTAGCAGTGGTTGCCTTAATCAAATGGTCCCATTTTTAACC < 41bp 1 0.319639306114289 1 0.894670724868774 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LOC102724404 ENSG00000251405 ncRNA_intronic Human sense_overlapping chr5:156821418 chr5:156821404 . . 0 7 hm5C_associated_SNPs_5383 0 0 0 0 0 unknown 1 0.500231643921092 0.210658550262452 0.999536712157815 hm5C_site_8304 DeepMRMD:0.210658550262452;iRNA_m5C:0.999536712157815 8305 chr5 157167739 157167739 1 + C T rs559600140 157167736 + 157167716 157167756 41 CGTGACCAACGTGGAGAAACCCCCGTCTCTACTAAAAATAC CGTGACCAACGTGGAGAAACCCCTGTCTCTACTAAAAATAC < 41bp 1 0.136260676731836 1 0.0631133317947388 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control THG1L ENSG00000113272 UTR3 Human protein_coding chr5:157167736 chr5:157167739 . . 0 24 hm5C_associated_SNPs_5384 0 0 0 0 0 Nucleus 1 0.500231641606496 1 0.999536716787008 hm5C_site_8305 DeepMRMD:1;iRNA_m5C:0.999536716787008 8306 chr5 157183955 157183955 1 + C T rs13357040 157183940 + 157183920 157183960 41 AATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACAAG AATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATTACAAG < 41bp 1 0.686581712562441 1 0.730872273445129 experiment 0.626836574875119 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LSM11 ENSG00000155858 UTR3 Human protein_coding chr5:157183940 chr5:157183955 . . 0 36 hm5C_associated_SNPs_5385 0 0 0 0 0 Ribosome 1 0.500231643921092 0.538255453109742 0.999536712157815 hm5C_site_8306 DeepMRMD:0.538255453109742;iRNA_m5C:0.999536712157815 8307 chr5 159849882 159849882 1 + A C rs185928602 159849863 + 159849843 159849883 41 GTCTGTAAAGACCAAGGGACCCCTCAAACAAAAACAGCCAA GTCTGTAAAGACCAAGGGACCCCTCAAACAAAAACAGCCCA < 41bp 1 0.131615885318835 1 0.212024092674255 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTTG1 ENSG00000164611 CDS Human protein_coding chr5:159849863 chr5:159849882 synonymous SNV . 0 40 hm5C_associated_SNPs_5388 0 0 1 0 1 Ribosome 1 0.500231643918162 1 0.999536712163676 hm5C_site_8307 DeepMRMD:1;iRNA_m5C:0.999536712163676 8308 chr5 162864709 162864709 1 + G C rs2069340 162864690 + 162864670 162864710 41 GGACAGTCCCCCTCCCCGGGCCTCTCTCCTCTTGCCTACGA GGACAGTCCCCCTCCCCGGGCCTCTCTCCTCTTGCCTACCA < 41bp 1 0.0995269159041038 1 0.0486246347427368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCNG1 ENSG00000113328 UTR5 Human protein_coding chr5:162864690 chr5:162864709 . . 0 40 hm5C_associated_SNPs_5389 0 0 1 0 0 Cytosol 1 0.500231643879518 1 0.999536712240965 hm5C_site_8308 DeepMRMD:1;iRNA_m5C:0.999536712240965 8309 chr5 162870787 162870787 1 + G A rs565093529 162870773 + 162870753 162870793 41 AATGGATTTAAGCTATGAAGCCTCAAAACATCACGAGATAA AATGGATTTAAGCTATGAAGCCTCAAAACATCACAAGATAA < 41bp 1 0.219086010726356 1 0.298170387744904 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCNG1 ENSG00000113328 UTR3 Human protein_coding chr5:162870773 chr5:162870787 . . 0 35 hm5C_associated_SNPs_5391 0 0 1 0 0 Cytosol 1 0.500234230265956 1 0.999531539468087 hm5C_site_8309 DeepMRMD:1;iRNA_m5C:0.999531539468087 8310 chr5 167719153 167719153 1 + G A rs370421132 167719173 + 167719153 167719193 41 GGAAGATGCCCCGGCCGGAGCTGCCCCTGCCGGAGGGCTGG AGAAGATGCCCCGGCCGGAGCTGCCCCTGCCGGAGGGCTGG < 41bp 1 0.38785734779605 1 0.106131881475449 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WWC1 ENSG00000113645 UTR5 Human protein_coding chr5:167719173 chr5:167719153 . . 0 1 hm5C_associated_SNPs_5392 0 0 0 0 0 Ribosome 1 0.500231643922644 1 0.999536712154711 hm5C_site_8310 DeepMRMD:1;iRNA_m5C:0.999536712154711 8311 chr5 167898616 167898616 1 + G A rs142168995 167898603 + 167898583 167898623 41 CCACAGCAACGGGGCAAATGCCCCAAGCTGGCTGTAAGTGA CCACAGCAACGGGGCAAATGCCCCAAGCTGGCTATAAGTGA < 41bp 1 0.58185174404829 1 0.337925970554352 experiment 0.83629651190342 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WWC1 ENSG00000113645 UTR3 Human protein_coding chr5:167898603 chr5:167898616 . . 0 34 hm5C_associated_SNPs_5393 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8311 DeepMRMD:1;iRNA_m5C:0.999536712157815 8312 chr5 167898616 167898616 1 + G A rs142168995 167898604 + 167898584 167898624 41 CACAGCAACGGGGCAAATGCCCCAAGCTGGCTGTAAGTGAC CACAGCAACGGGGCAAATGCCCCAAGCTGGCTATAAGTGAC < 41bp 1 0.478675826963062 1 0.528024792671204 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WWC1 ENSG00000113645 UTR3 Human protein_coding chr5:167898604 chr5:167898616 . . 0 33 hm5C_associated_SNPs_5394 0 0 0 0 0 Ribosome 1 0.500218790657712 0.943950414657592 0.999562418684577 hm5C_site_8312 DeepMRMD:0.943950414657592;iRNA_m5C:0.999562418684577 8313 chr5 167898616 167898616 1 + G A rs142168995 167898605 + 167898585 167898625 41 ACAGCAACGGGGCAAATGCCCCAAGCTGGCTGTAAGTGACC ACAGCAACGGGGCAAATGCCCCAAGCTGGCTATAAGTGACC < 41bp 1 0.240655988111283 1 0.134140878915787 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WWC1 ENSG00000113645 UTR3 Human protein_coding chr5:167898605 chr5:167898616 . . 0 32 hm5C_associated_SNPs_5395 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8313 DeepMRMD:1;iRNA_m5C:0.999536712157815 8314 chr5 167898616 167898616 1 + G A rs142168995 167898606 + 167898586 167898626 41 CAGCAACGGGGCAAATGCCCCAAGCTGGCTGTAAGTGACCC CAGCAACGGGGCAAATGCCCCAAGCTGGCTATAAGTGACCC < 41bp 1 0.465377240801274 1 0.579836010932922 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WWC1 ENSG00000113645 UTR3 Human protein_coding chr5:167898606 chr5:167898616 . . 0 31 hm5C_associated_SNPs_5396 0 0 0 0 0 Ribosome 1 0.500231643912891 0.840327978134156 0.999536712174218 hm5C_site_8314 DeepMRMD:0.840327978134156;iRNA_m5C:0.999536712174218 Highest math class taken (MTAG) 8315 chr5 167898620 167898620 1 + G C rs554566838 167898603 + 167898583 167898623 41 CCACAGCAACGGGGCAAATGCCCCAAGCTGGCTGTAAGTGA CCACAGCAACGGGGCAAATGCCCCAAGCTGGCTGTAACTGA < 41bp 1 0.61734594640105 1 0.373706221580505 experiment 0.765308107197899 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WWC1 ENSG00000113645 UTR3 Human protein_coding chr5:167898603 chr5:167898620 . . 0 38 hm5C_associated_SNPs_5397 0 0 0 0 0 Ribosome 1 0.500231643921084 1 0.999536712157832 hm5C_site_8315 DeepMRMD:1;iRNA_m5C:0.999536712157832 Highest math class taken (MTAG) 8316 chr5 167898620 167898620 1 + G C rs554566838 167898604 + 167898584 167898624 41 CACAGCAACGGGGCAAATGCCCCAAGCTGGCTGTAAGTGAC CACAGCAACGGGGCAAATGCCCCAAGCTGGCTGTAACTGAC < 41bp 1 0.490205058330739 1 0.616802871227264 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WWC1 ENSG00000113645 UTR3 Human protein_coding chr5:167898604 chr5:167898620 . . 0 37 hm5C_associated_SNPs_5398 0 0 0 0 0 Ribosome 1 0.500225245825096 0.766394257545472 0.999549508349807 hm5C_site_8316 DeepMRMD:0.766394257545472;iRNA_m5C:0.999549508349807 8317 chr5 167898620 167898620 1 + G C rs554566838 167898605 + 167898585 167898625 41 ACAGCAACGGGGCAAATGCCCCAAGCTGGCTGTAAGTGACC ACAGCAACGGGGCAAATGCCCCAAGCTGGCTGTAACTGACC < 41bp 1 0.271116676675584 1 0.117805331945419 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WWC1 ENSG00000113645 UTR3 Human protein_coding chr5:167898605 chr5:167898620 . . 0 36 hm5C_associated_SNPs_5399 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_8317 DeepMRMD:1;iRNA_m5C:0.999536712157816 8318 chr5 167898620 167898620 1 + G C rs554566838 167898606 + 167898586 167898626 41 CAGCAACGGGGCAAATGCCCCAAGCTGGCTGTAAGTGACCC CAGCAACGGGGCAAATGCCCCAAGCTGGCTGTAACTGACCC < 41bp 1 0.45169524728713 1 0.762113094329834 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WWC1 ENSG00000113645 UTR3 Human protein_coding chr5:167898606 chr5:167898620 . . 0 35 hm5C_associated_SNPs_5400 0 0 0 0 0 Ribosome 1 0.50023164407018 0.475773811340332 0.999536711859641 hm5C_site_8318 DeepMRMD:0.475773811340332;iRNA_m5C:0.999536711859641 8319 chr5 167913510 167913510 1 + G A rs244903 167913509 + 167913489 167913529 41 GACGCTGATGGGAGGATGGACGTACTGGTGTCTGAGTGCTC GACGCTGATGGGAGGATGGACATACTGGTGTCTGAGTGCTC < 41bp 1 0.234544168364331 1 0.11043593287468 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167913509 chr5:167913510 nonsynonymous SNV 0.604 0 22 hm5C_associated_SNPs_5401 1 0 1 0 1 Nucleus 1 0.500230823323634 1 0.999538353352731 hm5C_site_8319 DeepMRMD:1;iRNA_m5C:0.999538353352731 not specified not specified 8320 chr5 167943827 167943827 1 + G A rs653568 167943826 + 167943806 167943846 41 TGCTGCTCAGACATCCGTTGCGTATGGCTGCATCAAATATG TGCTGCTCAGACATCCGTTGCATATGGCTGCATCAAATATG < 41bp 1 0.137190194722491 1 0.0282550156116486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943826 chr5:167943827 synonymous SNV . 0 22 hm5C_associated_SNPs_5402 1 0 1 0 1 Nucleus 1 0.50023164391594 1 0.99953671216812 hm5C_site_8320 DeepMRMD:1;iRNA_m5C:0.99953671216812 not specified not specified 8321 chr5 169015479 169015479 1 + G A rs116483731 169015481 + 169015461 169015501 41 AAGAGGCTGAAGAAGAGCGACTAAAAGCTGCACAGTATGGT AAGAGGCTGAAGAAGAGCAACTAAAAGCTGCACAGTATGGT < 41bp 1 0.480665460148667 1 0.395975291728973 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015481 chr5:169015479 nonsynonymous SNV 0.175 0 19 hm5C_associated_SNPs_5403 0 0 1 0 2 chromatin 1 0.500231643524206 1 0.999536712951588 hm5C_site_8321 DeepMRMD:1;iRNA_m5C:0.999536712951588 8322 chr5 170736565 170736565 1 + C T rs146976707 170736570 + 170736550 170736590 41 GCCTCCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGG GCCTCCTTTGCGGGCTTCGGCGCGCCCTTCGAGGACGCGGG < 41bp 1 0.541219559952025 1 0.429928213357925 experiment 0.91756088009595 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736570 chr5:170736565 nonsynonymous SNV 0.443 2 16 hm5C_associated_SNPs_5404 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8322 DeepMRMD:1;iRNA_m5C:0.999536712157815 8323 chr5 170736565 170736565 1 + C T rs146976707 170736572 + 170736552 170736592 41 CTCCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGGAT CTCCTTTGCGGGCTTCGGCGCGCCCTTCGAGGACGCGGGAT < 41bp 1 0.339425354090711 1 0.139355778694153 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736572 chr5:170736565 nonsynonymous SNV 0.443 2 14 hm5C_associated_SNPs_5405 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8323 DeepMRMD:1;iRNA_m5C:0.999536712157815 8324 chr5 170736565 170736565 1 + C T rs146976707 170736574 + 170736554 170736594 41 CCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGGATCT CCTTTGCGGGCTTCGGCGCGCCCTTCGAGGACGCGGGATCT < 41bp 1 0.0963006573422267 1 0.0420863628387451 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736574 chr5:170736565 nonsynonymous SNV 0.443 2 12 hm5C_associated_SNPs_5406 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8324 DeepMRMD:1;iRNA_m5C:0.999536712157815 8325 chr5 170736565 170736565 1 + C T rs146976707 170736576 + 170736556 170736596 41 TTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGGATCTTA TTTGCGGGCTTCGGCGCGCCCTTCGAGGACGCGGGATCTTA < 41bp 1 0.48032666073556 1 0.294124901294708 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736576 chr5:170736565 nonsynonymous SNV 0.443 2 10 hm5C_associated_SNPs_5407 0 0 0 0 0 exosome 1 0.500234668207427 1 0.999530663585146 hm5C_site_8325 DeepMRMD:1;iRNA_m5C:0.999530663585146 8326 chr5 170736570 170736570 1 + C A rs36095128 170736572 + 170736552 170736592 41 CTCCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGGAT CTCCTTTGCGGGCCTCGGAGCGCCCTTCGAGGACGCGGGAT < 41bp 1 0.37303791962138 1 0.329236567020416 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736572 chr5:170736570 synonymous SNV . 0 19 hm5C_associated_SNPs_5408 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8326 DeepMRMD:1;iRNA_m5C:0.999536712157815 8327 chr5 170736570 170736570 1 + C A rs36095128 170736574 + 170736554 170736594 41 CCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGGATCT CCTTTGCGGGCCTCGGAGCGCCCTTCGAGGACGCGGGATCT < 41bp 1 0.124513998341229 1 0.0774925649166107 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736574 chr5:170736570 synonymous SNV . 0 17 hm5C_associated_SNPs_5409 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_8327 DeepMRMD:1;iRNA_m5C:0.999536712157815 8328 chr5 170736570 170736570 1 + C A rs36095128 170736576 + 170736556 170736596 41 TTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGGATCTTA TTTGCGGGCCTCGGAGCGCCCTTCGAGGACGCGGGATCTTA < 41bp 1 0.448477442730296 1 0.361215472221375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736576 chr5:170736570 synonymous SNV . 0 15 hm5C_associated_SNPs_5410 0 0 0 0 0 exosome 1 0.500231643921057 1 0.999536712157886 hm5C_site_8328 DeepMRMD:1;iRNA_m5C:0.999536712157886 8329 chr5 172447762 172447762 1 + G A rs17075508 172447743 + 172447723 172447763 41 GGTTTCTTTCCAGCAGTAGTCAGCCATCCGGACAGAACCGT GGTTTCTTTCCAGCAGTAGTCAGCCATCCGGACAGAACCAT < 41bp 1 0.265812238720448 1 0.75439178943634 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA74B ENSG00000212402 ncRNA_exonic Human snoRNA chr5:172447743 chr5:172447762 . . 0 40 hm5C_associated_SNPs_5412 0 0 1 1 0 unknown 1 0.500231643921092 0.49121642112732 0.999536712157815 hm5C_site_8329 DeepMRMD:0.49121642112732;iRNA_m5C:0.999536712157815 8330 chr5 172447762 172447762 1 + G A rs17075508 172447746 + 172447726 172447766 41 TTCTTTCCAGCAGTAGTCAGCCATCCGGACAGAACCGTTCC TTCTTTCCAGCAGTAGTCAGCCATCCGGACAGAACCATTCC < 41bp 1 0.0125333459923127 1 0.0604527592658997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA74B ENSG00000212402 ncRNA_exonic Human snoRNA chr5:172447746 chr5:172447762 . . 0 37 hm5C_associated_SNPs_5413 0 0 1 1 0 unknown 1 0.500231643917444 1 0.999536712165112 hm5C_site_8330 DeepMRMD:1;iRNA_m5C:0.999536712165112 8331 chr5 172447762 172447762 1 + G A rs17075508 172447750 + 172447730 172447770 41 TTCCAGCAGTAGTCAGCCATCCGGACAGAACCGTTCCTGTG TTCCAGCAGTAGTCAGCCATCCGGACAGAACCATTCCTGTG < 41bp 1 0.644006587641951 1 0.934125065803528 experiment 0.711986824716099 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA74B ENSG00000212402 ncRNA_exonic Human snoRNA chr5:172447750 chr5:172447762 . . 0 33 hm5C_associated_SNPs_5414 0 0 1 1 0 unknown 1 0.500231680692925 0.131749868392944 0.999536638614151 hm5C_site_8331 DeepMRMD:0.131749868392944;iRNA_m5C:0.999536638614151 8332 chr5 172447762 172447762 1 + G A rs17075508 172447755 + 172447735 172447775 41 GCAGTAGTCAGCCATCCGGACAGAACCGTTCCTGTGATGGT GCAGTAGTCAGCCATCCGGACAGAACCATTCCTGTGATGGT < 41bp 1 0.246439982672654 1 0.316506505012512 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA74B ENSG00000212402 ncRNA_exonic Human snoRNA chr5:172447755 chr5:172447762 . . 0 28 hm5C_associated_SNPs_5415 0 0 1 1 0 unknown 1 0.5002316435354 1 0.9995367129292 hm5C_site_8332 DeepMRMD:1;iRNA_m5C:0.9995367129292 8333 chr5 172447762 172447762 1 + G A rs17075508 172447760 + 172447740 172447780 41 AGTCAGCCATCCGGACAGAACCGTTCCTGTGATGGTGTTAC AGTCAGCCATCCGGACAGAACCATTCCTGTGATGGTGTTAC < 41bp 1 0.0271320025025088 1 0.0433060824871063 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA74B ENSG00000212402 ncRNA_exonic Human snoRNA chr5:172447760 chr5:172447762 . . 0 23 hm5C_associated_SNPs_5416 0 0 1 1 0 unknown 1 0.500231643921158 1 0.999536712157684 hm5C_site_8333 DeepMRMD:1;iRNA_m5C:0.999536712157684 8334 chr5 172461659 172461659 1 + G A rs138021157 172461669 + 172461649 172461689 41 TGAGAGATACGTTACTCTCTCCTTGGAATCTGTGGATTTGA TGAGAGATACATTACTCTCTCCTTGGAATCTGTGGATTTGA < 41bp 1 0.27562206979685 1 0.0829944014549255 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP6V0E1 ENSG00000113732 UTR3 Human protein_coding chr5:172461669 chr5:172461659 . . 0 11 hm5C_associated_SNPs_5417 0 0 1 1 0 Ribosome 1 0.500231640891205 1 0.999536718217589 hm5C_site_8334 DeepMRMD:1;iRNA_m5C:0.999536718217589 8335 chr5 172461659 172461659 1 + G A rs138021157 172461670 + 172461650 172461690 41 GAGAGATACGTTACTCTCTCCTTGGAATCTGTGGATTTGAA GAGAGATACATTACTCTCTCCTTGGAATCTGTGGATTTGAA < 41bp 1 0.522981418898329 1 0.110203325748444 experiment 0.954037162203343 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP6V0E1 ENSG00000113732 UTR3 Human protein_coding chr5:172461670 chr5:172461659 . . 0 10 hm5C_associated_SNPs_5418 0 0 1 1 0 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_8335 DeepMRMD:1;iRNA_m5C:0.999536712157813 8336 chr5 172461817 172461817 1 + G A rs15179 172461801 + 172461781 172461821 41 AGCACGTTCAGAGGGAAGAGCCATCTCAACAGAATCGCACC AGCACGTTCAGAGGGAAGAGCCATCTCAACAGAATCACACC < 41bp 1 0.250512329652773 1 0.451369881629944 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP6V0E1 ENSG00000113732 UTR3 Human protein_coding chr5:172461801 chr5:172461817 . . 0 37 hm5C_associated_SNPs_5419 0 0 1 0 0 Ribosome 1 0.500231643921086 1 0.999536712157827 hm5C_site_8336 DeepMRMD:1;iRNA_m5C:0.999536712157827 8337 chr5 174954974 174954974 1 + G C rs560534844 174954964 + 174954944 174954984 41 ACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCG ACGGAGTCTCGCTCTGTCACCCAGGCTGGACTGCAGTGGCG < 41bp 1 0.650220595871268 1 0.441585898399353 experiment 0.699558808257464 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174954964 chr5:174954974 . . 0 31 hm5C_associated_SNPs_5420 0 0 1 0 0 Ribosome 1 0.500231643912976 1 0.999536712174047 hm5C_site_8337 DeepMRMD:1;iRNA_m5C:0.999536712174047 8338 chr5 174954974 174954974 1 + G C rs560534844 174954994 + 174954974 174955014 41 GTGCAGTGGCGTAGTCTCGGCTCACTGCAAGCTCCGCCTCC CTGCAGTGGCGTAGTCTCGGCTCACTGCAAGCTCCGCCTCC < 41bp 1 0.635792789859349 1 0.0555755198001862 experiment 0.728414420281302 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174954994 chr5:174954974 . . 0 1 hm5C_associated_SNPs_5422 0 0 1 0 0 Ribosome 1 0.500231652110348 1 0.999536695779304 hm5C_site_8338 DeepMRMD:1;iRNA_m5C:0.999536695779304 8339 chr5 174955015 174955015 1 + C T rs6897275 174954996 + 174954976 174955016 41 GCAGTGGCGTAGTCTCGGCTCACTGCAAGCTCCGCCTCCCG GCAGTGGCGTAGTCTCGGCTCACTGCAAGCTCCGCCTCCTG < 41bp 1 0.68300792426055 1 0.0546896755695343 experiment 0.6339841514789 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174954996 chr5:174955015 . . 0 40 hm5C_associated_SNPs_5423 0 0 0 0 0 Ribosome 1 0.500232520344124 1 0.999534959311752 hm5C_site_8339 DeepMRMD:1;iRNA_m5C:0.999534959311752 8340 chr5 174955072 174955072 1 + C A rs186202668 174955074 + 174955054 174955094 41 GCTGGGACTACAGGCGCCCGCCACCACGCCCGGCTAATTTT GCTGGGACTACAGGCGCCAGCCACCACGCCCGGCTAATTTT < 41bp 1 0.360551456463611 1 0.194098502397537 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955074 chr5:174955072 . . 0 19 hm5C_associated_SNPs_5424 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_8340 DeepMRMD:1;iRNA_m5C:0.999536712157818 8341 chr5 174955154 174955154 1 + C T rs533623003 174955156 + 174955136 174955176 41 TCTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAGGT TCTCCTGACCTCGTGATCTGCCCGCCTTGGCCTCCCAAGGT < 41bp 1 0.64887012092169 1 0.179055988788605 experiment 0.702259758156621 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955156 chr5:174955154 . . 0 19 hm5C_associated_SNPs_5426 0 0 1 0 0 Ribosome 1 0.500231609048272 1 0.999536781903456 hm5C_site_8341 DeepMRMD:1;iRNA_m5C:0.999536781903456 8342 chr5 174955154 174955154 1 + C T rs533623003 174955157 + 174955137 174955177 41 CTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAGGTG CTCCTGACCTCGTGATCTGCCCGCCTTGGCCTCCCAAGGTG < 41bp 1 0.64925458597279 1 0.663671135902405 experiment 0.701490828054421 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955157 chr5:174955154 . . 0 18 hm5C_associated_SNPs_5427 0 0 1 0 0 Ribosome 1 0.500231638435912 0.67265772819519 0.999536723128176 hm5C_site_8342 DeepMRMD:0.67265772819519;iRNA_m5C:0.999536723128176 8343 chr5 174955154 174955154 1 + C T rs533623003 174955160 + 174955140 174955180 41 CTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAGGTGCTG CTGACCTCGTGATCTGCCCGCCTTGGCCTCCCAAGGTGCTG < 41bp 1 0.186118880649781 1 0.0499935150146484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955160 chr5:174955154 . . 0 15 hm5C_associated_SNPs_5429 0 0 1 0 0 Ribosome 1 0.50022581336718 1 0.999548373265639 hm5C_site_8343 DeepMRMD:1;iRNA_m5C:0.999548373265639 8344 chr5 174955154 174955154 1 + C T rs533623003 174955161 + 174955141 174955181 41 TGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAGGTGCTGG TGACCTCGTGATCTGCCCGCCTTGGCCTCCCAAGGTGCTGG < 41bp 1 0.509959236676303 1 0.0561020374298096 experiment 0.980081526647393 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955161 chr5:174955154 . . 0 14 hm5C_associated_SNPs_5430 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8344 DeepMRMD:1;iRNA_m5C:0.999536712157815 8345 chr5 174955154 174955154 1 + C T rs533623003 174955166 + 174955146 174955186 41 TCGTGATCCGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTA TCGTGATCTGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTA < 41bp 1 0.231723703074195 1 0.218073308467865 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955166 chr5:174955154 . . 0 9 hm5C_associated_SNPs_5431 0 0 1 0 0 Ribosome 1 0.500231643921276 1 0.999536712157449 hm5C_site_8345 DeepMRMD:1;iRNA_m5C:0.999536712157449 8346 chr5 174955154 174955154 1 + C T rs533623003 174955167 + 174955147 174955187 41 CGTGATCCGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTAC CGTGATCTGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTAC < 41bp 1 0.60887195801874 1 0.0726242661476135 experiment 0.782256083962519 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955167 chr5:174955154 . . 0 8 hm5C_associated_SNPs_5432 0 0 1 0 0 Ribosome 1 0.500231643921228 1 0.999536712157545 hm5C_site_8346 DeepMRMD:1;iRNA_m5C:0.999536712157545 8347 chr5 174955154 174955154 1 + C T rs533623003 174955169 + 174955149 174955189 41 TGATCCGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTACAA TGATCTGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTACAA < 41bp 1 0.597953305629257 1 0.088203638792038 experiment 0.804093388741485 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955169 chr5:174955154 . . 0 6 hm5C_associated_SNPs_5433 0 0 1 0 0 Ribosome 1 0.5002316439211 1 0.999536712157799 hm5C_site_8347 DeepMRMD:1;iRNA_m5C:0.999536712157799 8348 chr5 174955154 174955154 1 + C T rs533623003 174955170 + 174955150 174955190 41 GATCCGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTACAAG GATCTGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTACAAG < 41bp 1 0.455189244481468 1 0.375869899988174 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955170 chr5:174955154 . . 0 5 hm5C_associated_SNPs_5434 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_8348 DeepMRMD:1;iRNA_m5C:0.999536712157814 8349 chr5 174955155 174955155 1 + G A rs145597256 174955156 + 174955136 174955176 41 TCTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAGGT TCTCCTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAGGT < 41bp 1 0.663105353380041 1 0.1991126537323 experiment 0.673789293239919 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955156 chr5:174955155 . . 0 20 hm5C_associated_SNPs_5435 0 0 1 0 0 Ribosome 1 0.50023160933338 1 0.999536781333241 hm5C_site_8349 DeepMRMD:1;iRNA_m5C:0.999536781333241 8350 chr5 174955155 174955155 1 + G A rs145597256 174955157 + 174955137 174955177 41 CTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAGGTG CTCCTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAGGTG < 41bp 1 0.634278792627628 1 0.562555134296417 experiment 0.731442414744743 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955157 chr5:174955155 . . 0 19 hm5C_associated_SNPs_5436 0 0 1 0 0 Ribosome 1 0.500231643921092 0.874889731407166 0.999536712157815 hm5C_site_8350 DeepMRMD:0.874889731407166;iRNA_m5C:0.999536712157815 8351 chr5 174955155 174955155 1 + G A rs145597256 174955160 + 174955140 174955180 41 CTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAGGTGCTG CTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAGGTGCTG < 41bp 1 0.17724640669657 1 0.0437311232089996 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955160 chr5:174955155 . . 0 16 hm5C_associated_SNPs_5438 0 0 1 0 0 Ribosome 1 0.500225773505105 1 0.99954845298979 hm5C_site_8351 DeepMRMD:1;iRNA_m5C:0.99954845298979 8352 chr5 174955155 174955155 1 + G A rs145597256 174955161 + 174955141 174955181 41 TGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAGGTGCTGG TGACCTCGTGATCCACCCGCCTTGGCCTCCCAAGGTGCTGG < 41bp 1 0.518859304876336 1 0.0493970811367035 experiment 0.962281390247328 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955161 chr5:174955155 . . 0 15 hm5C_associated_SNPs_5439 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8352 DeepMRMD:1;iRNA_m5C:0.999536712157815 8353 chr5 174955155 174955155 1 + G A rs145597256 174955166 + 174955146 174955186 41 TCGTGATCCGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTA TCGTGATCCACCCGCCTTGGCCTCCCAAGGTGCTGGGATTA < 41bp 1 0.212302580705542 1 0.185965865850449 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955166 chr5:174955155 . . 0 10 hm5C_associated_SNPs_5440 0 0 1 0 0 Ribosome 1 0.500231643921275 1 0.999536712157449 hm5C_site_8353 DeepMRMD:1;iRNA_m5C:0.999536712157449 8354 chr5 174955155 174955155 1 + G A rs145597256 174955167 + 174955147 174955187 41 CGTGATCCGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTAC CGTGATCCACCCGCCTTGGCCTCCCAAGGTGCTGGGATTAC < 41bp 1 0.541245063578968 1 0.0579765439033508 experiment 0.917509872842063 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955167 chr5:174955155 . . 0 9 hm5C_associated_SNPs_5441 0 0 1 0 0 Ribosome 1 0.500231643931946 1 0.999536712136109 hm5C_site_8354 DeepMRMD:1;iRNA_m5C:0.999536712136109 8355 chr5 174955155 174955155 1 + G A rs145597256 174955169 + 174955149 174955189 41 TGATCCGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTACAA TGATCCACCCGCCTTGGCCTCCCAAGGTGCTGGGATTACAA < 41bp 1 0.637192684605525 1 0.0832319557666779 experiment 0.725614630788949 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955169 chr5:174955155 . . 0 7 hm5C_associated_SNPs_5442 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8355 DeepMRMD:1;iRNA_m5C:0.999536712157815 8356 chr5 174955155 174955155 1 + G A rs145597256 174955170 + 174955150 174955190 41 GATCCGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTACAAG GATCCACCCGCCTTGGCCTCCCAAGGTGCTGGGATTACAAG < 41bp 1 0.46229133217827 1 0.455670028924942 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955170 chr5:174955155 . . 0 6 hm5C_associated_SNPs_5443 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_8356 DeepMRMD:1;iRNA_m5C:0.999536712157814 8357 chr5 174955174 174955174 1 + G A rs273080 174955156 + 174955136 174955176 41 TCTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAGGT TCTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGT < 41bp 1 0.628142511951822 1 0.253180682659149 experiment 0.743714976096357 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955156 chr5:174955174 . . 0 39 hm5C_associated_SNPs_5444 0 0 1 0 0 Ribosome 1 0.500231643956835 1 0.99953671208633 hm5C_site_8357 DeepMRMD:1;iRNA_m5C:0.99953671208633 8358 chr5 174955174 174955174 1 + G A rs273080 174955157 + 174955137 174955177 41 CTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAGGTG CTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTG < 41bp 1 0.566738301339033 1 0.351647645235062 experiment 0.866523397321933 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955157 chr5:174955174 . . 0 38 hm5C_associated_SNPs_5445 0 0 1 0 0 Ribosome 1 0.500231643922576 1 0.999536712154848 hm5C_site_8358 DeepMRMD:1;iRNA_m5C:0.999536712154848 8359 chr5 174955174 174955174 1 + G A rs273080 174955158 + 174955138 174955178 41 TCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAGGTGC TCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGC < 41bp 1 0.664250930059662 1 0.330563127994537 experiment 0.671498139880676 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955158 chr5:174955174 . . 0 37 hm5C_associated_SNPs_5446 0 0 1 0 0 Ribosome 1 0.500231632466783 1 0.999536735066433 hm5C_site_8359 DeepMRMD:1;iRNA_m5C:0.999536735066433 8360 chr5 174955174 174955174 1 + G A rs273080 174955160 + 174955140 174955180 41 CTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAGGTGCTG CTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTG < 41bp 1 0.18191523544402 1 0.0615979135036469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955160 chr5:174955174 . . 0 35 hm5C_associated_SNPs_5447 0 0 1 0 0 Ribosome 1 0.500231641554255 1 0.999536716891489 hm5C_site_8360 DeepMRMD:1;iRNA_m5C:0.999536716891489 8361 chr5 174955174 174955174 1 + G A rs273080 174955161 + 174955141 174955181 41 TGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAGGTGCTGG TGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGG < 41bp 1 0.512216566799567 1 0.105557829141617 experiment 0.975566866400866 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955161 chr5:174955174 . . 0 34 hm5C_associated_SNPs_5448 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8361 DeepMRMD:1;iRNA_m5C:0.999536712157815 8362 chr5 174955174 174955174 1 + G A rs273080 174955166 + 174955146 174955186 41 TCGTGATCCGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTA TCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTA < 41bp 1 0.219128803444582 1 0.175916939973831 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955166 chr5:174955174 . . 0 29 hm5C_associated_SNPs_5449 0 0 1 0 0 Ribosome 1 0.500231643925751 1 0.999536712148498 hm5C_site_8362 DeepMRMD:1;iRNA_m5C:0.999536712148498 8363 chr5 174955174 174955174 1 + G A rs273080 174955167 + 174955147 174955187 41 CGTGATCCGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTAC CGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTAC < 41bp 1 0.562839508329663 1 0.151089519262314 experiment 0.874320983340674 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955167 chr5:174955174 . . 0 28 hm5C_associated_SNPs_5450 0 0 1 0 0 Ribosome 1 0.500231643921098 1 0.999536712157804 hm5C_site_8363 DeepMRMD:1;iRNA_m5C:0.999536712157804 8364 chr5 174955174 174955174 1 + G A rs273080 174955169 + 174955149 174955189 41 TGATCCGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTACAA TGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAA < 41bp 1 0.55613745996458 1 0.171595811843872 experiment 0.88772508007084 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955169 chr5:174955174 . . 0 26 hm5C_associated_SNPs_5451 0 0 1 0 0 Ribosome 1 0.500231643921631 1 0.999536712156738 hm5C_site_8364 DeepMRMD:1;iRNA_m5C:0.999536712156738 8365 chr5 174955174 174955174 1 + G A rs273080 174955170 + 174955150 174955190 41 GATCCGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTACAAG GATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAAG < 41bp 1 0.565237653578562 1 0.239259958267212 experiment 0.869524692842876 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955170 chr5:174955174 . . 0 25 hm5C_associated_SNPs_5452 0 0 1 0 0 Ribosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_8365 DeepMRMD:1;iRNA_m5C:0.999536712157806 8366 chr5 174955174 174955174 1 + G A rs273080 174955171 + 174955151 174955191 41 ATCCGCCCGCCTTGGCCTCCCAAGGTGCTGGGATTACAAGC ATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAAGC < 41bp 1 0.684103982881052 1 0.415297597646713 experiment 0.631792034237896 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955171 chr5:174955174 . . 0 24 hm5C_associated_SNPs_5453 0 0 1 0 0 Ribosome 1 0.500231643924754 1 0.999536712150491 hm5C_site_8366 DeepMRMD:1;iRNA_m5C:0.999536712150491 8367 chr5 174955204 174955204 1 + A G rs142635694 174955197 + 174955177 174955217 41 GCTGGGATTACAAGCGTGAGCCACCGCACCCGGCCTGAAAA GCTGGGATTACAAGCGTGAGCCACCGCGCCCGGCCTGAAAA < 41bp 1 0.498096365066933 1 0.0894395709037781 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955197 chr5:174955204 . . 0 28 hm5C_associated_SNPs_5454 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_8367 DeepMRMD:1;iRNA_m5C:0.999536712157815 8368 chr5 174955204 174955204 1 + A G rs142635694 174955200 + 174955180 174955220 41 GGGATTACAAGCGTGAGCCACCGCACCCGGCCTGAAAATAT GGGATTACAAGCGTGAGCCACCGCGCCCGGCCTGAAAATAT < 41bp 1 0.485705599562606 1 0.322129905223846 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955200 chr5:174955204 . . 0 25 hm5C_associated_SNPs_5456 0 0 1 0 0 Ribosome 1 0.500231644879782 1 0.999536710240436 hm5C_site_8368 DeepMRMD:1;iRNA_m5C:0.999536710240436 8369 chr5 174955204 174955204 1 + A G rs142635694 174955201 + 174955181 174955221 41 GGATTACAAGCGTGAGCCACCGCACCCGGCCTGAAAATATT GGATTACAAGCGTGAGCCACCGCGCCCGGCCTGAAAATATT < 41bp 1 0.538725778987757 1 0.289256691932678 experiment 0.922548442024486 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955201 chr5:174955204 . . 0 24 hm5C_associated_SNPs_5457 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8369 DeepMRMD:1;iRNA_m5C:0.999536712157815 8370 chr5 174955204 174955204 1 + A G rs142635694 174955203 + 174955183 174955223 41 ATTACAAGCGTGAGCCACCGCACCCGGCCTGAAAATATTTT ATTACAAGCGTGAGCCACCGCGCCCGGCCTGAAAATATTTT < 41bp 1 0.504264705540116 1 0.267409086227417 experiment 0.991470588919767 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955203 chr5:174955204 . . 0 22 hm5C_associated_SNPs_5458 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8370 DeepMRMD:1;iRNA_m5C:0.999536712157815 8371 chr5 174955204 174955204 1 + A G rs142635694 174955205 + 174955185 174955225 41 TACAAGCGTGAGCCACCGCACCCGGCCTGAAAATATTTTCT TACAAGCGTGAGCCACCGCGCCCGGCCTGAAAATATTTTCT < 41bp 1 0.438322518231597 1 0.276776880025864 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955205 chr5:174955204 . . 0 20 hm5C_associated_SNPs_5459 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8371 DeepMRMD:1;iRNA_m5C:0.999536712157815 8372 chr5 174955204 174955204 1 + A G rs142635694 174955206 + 174955186 174955226 41 ACAAGCGTGAGCCACCGCACCCGGCCTGAAAATATTTTCTA ACAAGCGTGAGCCACCGCGCCCGGCCTGAAAATATTTTCTA < 41bp 1 0.438691700996778 1 0.19255205988884 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955206 chr5:174955204 . . 0 19 hm5C_associated_SNPs_5460 0 0 1 0 0 Ribosome 1 0.500231672476482 1 0.999536655047035 hm5C_site_8372 DeepMRMD:1;iRNA_m5C:0.999536655047035 8373 chr5 174955204 174955204 1 + A G rs142635694 174955207 + 174955187 174955227 41 CAAGCGTGAGCCACCGCACCCGGCCTGAAAATATTTTCTAA CAAGCGTGAGCCACCGCGCCCGGCCTGAAAATATTTTCTAA < 41bp 1 0.558373053097693 1 0.392219305038452 experiment 0.883253893804614 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955207 chr5:174955204 . . 0 18 hm5C_associated_SNPs_5461 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8373 DeepMRMD:1;iRNA_m5C:0.999536712157815 8374 chr5 174955204 174955204 1 + A G rs142635694 174955210 + 174955190 174955230 41 GCGTGAGCCACCGCACCCGGCCTGAAAATATTTTCTAAAAA GCGTGAGCCACCGCGCCCGGCCTGAAAATATTTTCTAAAAA < 41bp 1 0.406105120359548 1 0.0561220645904541 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955210 chr5:174955204 . . 0 15 hm5C_associated_SNPs_5462 0 0 1 0 0 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_8374 DeepMRMD:1;iRNA_m5C:0.999536712157808 8375 chr5 174955204 174955204 1 + A G rs142635694 174955211 + 174955191 174955231 41 CGTGAGCCACCGCACCCGGCCTGAAAATATTTTCTAAAAAG CGTGAGCCACCGCGCCCGGCCTGAAAATATTTTCTAAAAAG < 41bp 1 0.571615047740877 1 0.256905943155289 experiment 0.856769904518246 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955211 chr5:174955204 . . 0 14 hm5C_associated_SNPs_5463 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8375 DeepMRMD:1;iRNA_m5C:0.999536712157815 8376 chr5 174955207 174955207 1 + C A rs560486726 174955197 + 174955177 174955217 41 GCTGGGATTACAAGCGTGAGCCACCGCACCCGGCCTGAAAA GCTGGGATTACAAGCGTGAGCCACCGCACCAGGCCTGAAAA < 41bp 1 0.505516637591944 1 0.121363371610641 experiment 0.988966724816112 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955197 chr5:174955207 . . 0 31 hm5C_associated_SNPs_5464 0 0 1 0 0 Ribosome 1 0.500231643921104 1 0.999536712157791 hm5C_site_8376 DeepMRMD:1;iRNA_m5C:0.999536712157791 8377 chr5 174955207 174955207 1 + C A rs560486726 174955200 + 174955180 174955220 41 GGGATTACAAGCGTGAGCCACCGCACCCGGCCTGAAAATAT GGGATTACAAGCGTGAGCCACCGCACCAGGCCTGAAAATAT < 41bp 1 0.594688052342246 1 0.316779613494873 experiment 0.810623895315509 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955200 chr5:174955207 . . 0 28 hm5C_associated_SNPs_5466 0 0 1 0 0 Ribosome 1 0.500231281821301 1 0.999537436357399 hm5C_site_8377 DeepMRMD:1;iRNA_m5C:0.999537436357399 8378 chr5 174955207 174955207 1 + C A rs560486726 174955201 + 174955181 174955221 41 GGATTACAAGCGTGAGCCACCGCACCCGGCCTGAAAATATT GGATTACAAGCGTGAGCCACCGCACCAGGCCTGAAAATATT < 41bp 1 0.355363810652105 1 0.227564960718155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955201 chr5:174955207 . . 0 27 hm5C_associated_SNPs_5467 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8378 DeepMRMD:1;iRNA_m5C:0.999536712157815 8379 chr5 174955207 174955207 1 + C A rs560486726 174955205 + 174955185 174955225 41 TACAAGCGTGAGCCACCGCACCCGGCCTGAAAATATTTTCT TACAAGCGTGAGCCACCGCACCAGGCCTGAAAATATTTTCT < 41bp 1 0.408228510391957 1 0.531280934810638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955205 chr5:174955207 . . 0 23 hm5C_associated_SNPs_5468 0 0 1 0 0 Ribosome 1 0.500231643921132 0.937438130378724 0.999536712157736 hm5C_site_8379 DeepMRMD:0.937438130378724;iRNA_m5C:0.999536712157736 8380 chr5 174955207 174955207 1 + C A rs560486726 174955210 + 174955190 174955230 41 GCGTGAGCCACCGCACCCGGCCTGAAAATATTTTCTAAAAA GCGTGAGCCACCGCACCAGGCCTGAAAATATTTTCTAAAAA < 41bp 1 0.475822194548893 1 0.07100909948349 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955210 chr5:174955207 . . 0 18 hm5C_associated_SNPs_5470 0 0 1 0 0 Ribosome 1 0.500231643921022 1 0.999536712157955 hm5C_site_8380 DeepMRMD:1;iRNA_m5C:0.999536712157955 8381 chr5 174955207 174955207 1 + C A rs560486726 174955211 + 174955191 174955231 41 CGTGAGCCACCGCACCCGGCCTGAAAATATTTTCTAAAAAG CGTGAGCCACCGCACCAGGCCTGAAAATATTTTCTAAAAAG < 41bp 1 0.576032145407972 1 0.207247376441956 experiment 0.847935709184056 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955211 chr5:174955207 . . 0 17 hm5C_associated_SNPs_5471 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_8381 DeepMRMD:1;iRNA_m5C:0.999536712157815 8382 chr5 174955208 174955208 1 + G A rs273079 174955197 + 174955177 174955217 41 GCTGGGATTACAAGCGTGAGCCACCGCACCCGGCCTGAAAA GCTGGGATTACAAGCGTGAGCCACCGCACCCAGCCTGAAAA < 41bp 1 0.465045353490536 1 0.0445707738399506 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955197 chr5:174955208 . . 0 32 hm5C_associated_SNPs_5472 0 0 1 0 0 Ribosome 1 0.500231643921106 1 0.999536712157788 hm5C_site_8382 DeepMRMD:1;iRNA_m5C:0.999536712157788 8383 chr5 174955208 174955208 1 + G A rs273079 174955200 + 174955180 174955220 41 GGGATTACAAGCGTGAGCCACCGCACCCGGCCTGAAAATAT GGGATTACAAGCGTGAGCCACCGCACCCAGCCTGAAAATAT < 41bp 1 0.57405988871275 1 0.138337939977646 experiment 0.8518802225745 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955200 chr5:174955208 . . 0 29 hm5C_associated_SNPs_5474 0 0 1 0 0 Ribosome 1 0.500231449132646 1 0.999537101734708 hm5C_site_8383 DeepMRMD:1;iRNA_m5C:0.999537101734708 8384 chr5 174955208 174955208 1 + G A rs273079 174955201 + 174955181 174955221 41 GGATTACAAGCGTGAGCCACCGCACCCGGCCTGAAAATATT GGATTACAAGCGTGAGCCACCGCACCCAGCCTGAAAATATT < 41bp 1 0.303612407705438 1 0.133660644292831 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955201 chr5:174955208 . . 0 28 hm5C_associated_SNPs_5475 0 0 1 0 0 Ribosome 1 0.500231643921161 1 0.999536712157678 hm5C_site_8384 DeepMRMD:1;iRNA_m5C:0.999536712157678 8385 chr5 174955208 174955208 1 + G A rs273079 174955203 + 174955183 174955223 41 ATTACAAGCGTGAGCCACCGCACCCGGCCTGAAAATATTTT ATTACAAGCGTGAGCCACCGCACCCAGCCTGAAAATATTTT < 41bp 1 0.426152923799633 1 0.0677065253257751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955203 chr5:174955208 . . 0 26 hm5C_associated_SNPs_5476 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8385 DeepMRMD:1;iRNA_m5C:0.999536712157815 8386 chr5 174955208 174955208 1 + G A rs273079 174955205 + 174955185 174955225 41 TACAAGCGTGAGCCACCGCACCCGGCCTGAAAATATTTTCT TACAAGCGTGAGCCACCGCACCCAGCCTGAAAATATTTTCT < 41bp 1 0.241882703139671 1 0.203181236982346 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955205 chr5:174955208 . . 0 24 hm5C_associated_SNPs_5477 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8386 DeepMRMD:1;iRNA_m5C:0.999536712157815 8387 chr5 174955208 174955208 1 + G A rs273079 174955206 + 174955186 174955226 41 ACAAGCGTGAGCCACCGCACCCGGCCTGAAAATATTTTCTA ACAAGCGTGAGCCACCGCACCCAGCCTGAAAATATTTTCTA < 41bp 1 0.383877563879203 1 0.279037714004517 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955206 chr5:174955208 . . 0 23 hm5C_associated_SNPs_5478 0 0 1 0 0 Ribosome 1 0.500217658019436 1 0.999564683961129 hm5C_site_8387 DeepMRMD:1;iRNA_m5C:0.999564683961129 8388 chr5 174955208 174955208 1 + G A rs273079 174955207 + 174955187 174955227 41 CAAGCGTGAGCCACCGCACCCGGCCTGAAAATATTTTCTAA CAAGCGTGAGCCACCGCACCCAGCCTGAAAATATTTTCTAA < 41bp 1 0.606601048517374 1 0.65020626783371 experiment 0.786797902965252 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955207 chr5:174955208 . . 0 22 hm5C_associated_SNPs_5479 0 0 1 0 0 Ribosome 1 0.500231643921092 0.69958746433258 0.999536712157815 hm5C_site_8388 DeepMRMD:0.69958746433258;iRNA_m5C:0.999536712157815 8389 chr5 174955208 174955208 1 + G A rs273079 174955210 + 174955190 174955230 41 GCGTGAGCCACCGCACCCGGCCTGAAAATATTTTCTAAAAA GCGTGAGCCACCGCACCCAGCCTGAAAATATTTTCTAAAAA < 41bp 1 0.458759439858721 1 0.134539693593979 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955210 chr5:174955208 . . 0 19 hm5C_associated_SNPs_5480 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_8389 DeepMRMD:1;iRNA_m5C:0.999536712157815 8390 chr5 174955208 174955208 1 + G A rs273079 174955211 + 174955191 174955231 41 CGTGAGCCACCGCACCCGGCCTGAAAATATTTTCTAAAAAG CGTGAGCCACCGCACCCAGCCTGAAAATATTTTCTAAAAAG < 41bp 1 0.607991836399964 1 0.479783356189728 experiment 0.784016327200072 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955211 chr5:174955208 . . 0 18 hm5C_associated_SNPs_5481 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_8390 DeepMRMD:1;iRNA_m5C:0.999536712157813 8391 chr5 175815874 175815874 1 + T C rs1060588 175815854 + 175815834 175815874 41 GCCCTGTGATTCCGGAGGTCCCCTTTGAACCATCGAAGCCT GCCCTGTGATTCCGGAGGTCCCCTTTGAACCATCGAAGCCC < 41bp 1 0.183127292953305 1 0.0216695070266724 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HIGD2A ENSG00000146066 CDS Human protein_coding chr5:175815854 chr5:175815874 synonymous SNV . 0 41 hm5C_associated_SNPs_5482 0 0 1 0 0 Cytosol 1 0.500231643920313 1 0.999536712159374 hm5C_site_8391 DeepMRMD:1;iRNA_m5C:0.999536712159374 8392 chr5 176085168 176085168 1 + A G rs748743 176085169 + 176085149 176085189 41 AGTCAAGTTCAGCATCTTCACCGTGGCTGCAGAGCTGCCTG AGTCAAGTTCAGCATCTTCGCCGTGGCTGCAGAGCTGCCTG < 41bp 1 0.643504229612333 1 0.834322333335876 experiment 0.712991540775334 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN17 ENSG00000048140 UTR3 Human protein_coding chr5:176085169 chr5:176085168 . . 0 20 hm5C_associated_SNPs_5483 0 0 1 1 0 Endoplasmic reticulum 1 0.500231643931182 0.331355333328248 0.999536712137635 hm5C_site_8392 DeepMRMD:0.331355333328248;iRNA_m5C:0.999536712137635 8393 chr5 176085171 176085171 1 + G A rs146039549 176085169 + 176085149 176085189 41 AGTCAAGTTCAGCATCTTCACCGTGGCTGCAGAGCTGCCTG AGTCAAGTTCAGCATCTTCACCATGGCTGCAGAGCTGCCTG < 41bp 1 0.510653080395821 1 0.725547909736633 experiment 0.978693839208359 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN17 ENSG00000048140 UTR3 Human protein_coding chr5:176085169 chr5:176085171 . . 0 23 hm5C_associated_SNPs_5484 0 0 1 1 0 Endoplasmic reticulum 1 0.500231633947198 0.548904180526734 0.999536732105604 hm5C_site_8393 DeepMRMD:0.548904180526734;iRNA_m5C:0.999536732105604 8394 chr5 176085282 176085282 1 + G A rs73332199 176085281 + 176085261 176085301 41 AGCCTGTGCCTGCCTACTAGCGCTCTGGGGTTCGGAGAGTT AGCCTGTGCCTGCCTACTAGCACTCTGGGGTTCGGAGAGTT < 41bp 1 0.190959309517946 1 0.034780740737915 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN17 ENSG00000048140 UTR3 Human protein_coding chr5:176085281 chr5:176085282 . . 0 22 hm5C_associated_SNPs_5485 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_8394 DeepMRMD:1;iRNA_m5C:0.999536712157815 8395 chr5 176522675 176522675 1 + C T rs34138361 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTTCT < 41bp 1 0.0409313457873247 1 0.151924073696136 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522675 nonsynonymous SNV 0.985 5 39 hm5C_associated_SNPs_5486 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921049 1 0.999536712157902 hm5C_site_8395 DeepMRMD:1;iRNA_m5C:0.999536712157902 8396 chr5 176721119 176721119 1 + G A rs35848863 176721103 + 176721083 176721123 41 GCAATCAACAGGAATGGCTGCTCAGGCACCCAAAATGTCAG GCAATCAACAGGAATGGCTGCTCAGGCACCCAAAATATCAG < 41bp 1 0.164823780597714 1 0.0818540155887604 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176721103 chr5:176721119 nonsynonymous SNV 0.671 1 37 hm5C_associated_SNPs_5487 4 0 1 0 0 Nucleus 1 0.50023196830423 1 0.99953606339154 hm5C_site_8396 DeepMRMD:1;iRNA_m5C:0.99953606339154 not specified not specified 8397 chr5 176722005 176722005 1 + G A rs78247455 176722024 + 176722004 176722044 41 GGCCTTTTTATATGAGCCAACAACTCAGGCCTCAGGAAGAG GACCTTTTTATATGAGCCAACAACTCAGGCCTCAGGAAGAG < 41bp 1 0.115480277649461 1 0.0649799108505249 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176722024 chr5:176722005 nonsynonymous SNV 0.996 2 2 hm5C_associated_SNPs_5488 4 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8397 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 8398 chr5 176733907 176733907 1 + T C rs185277044 176733904 + 176733884 176733924 41 TTTTGTTCTCTGATGTGTCTCAGTATCTAGCACATAATAGA TTTTGTTCTCTGATGTGTCTCAGCATCTAGCACATAATAGA < 41bp 1 0.675400965330433 1 0.342762231826782 experiment 0.649198069339134 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MXD3;PRELID1 ENSG00000169230;ENSG00000213347 UTR3 Human other chr5:176733904 chr5:176733907 . . 0 24 hm5C_associated_SNPs_5489 0 0 1 2 0 unknown 1 0.500231647191784 1 0.999536705616431 hm5C_site_8398 DeepMRMD:1;iRNA_m5C:0.999536705616431 8399 chr5 177558290 177558290 1 + G A rs115379028 177558281 + 177558261 177558301 41 GGAGTCCCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAG GGAGTCCCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAG < 41bp 1 0.51379835412139 1 0.481580168008804 experiment 0.972403291757219 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558281 chr5:177558290 . . 0 30 hm5C_associated_SNPs_5494 0 0 1 0 2 Cytosol 1 0.500231643938095 1 0.99953671212381 hm5C_site_8399 DeepMRMD:1;iRNA_m5C:0.99953671212381 8400 chr5 177558290 177558290 1 + G A rs115379028 177558282 + 177558262 177558302 41 GAGTCCCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGC GAGTCCCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGC < 41bp 1 0.219449900284774 1 0.146189004182816 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558282 chr5:177558290 . . 0 29 hm5C_associated_SNPs_5495 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8400 DeepMRMD:1;iRNA_m5C:0.999536712157815 8401 chr5 177558290 177558290 1 + G A rs115379028 177558283 + 177558263 177558303 41 AGTCCCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGCC AGTCCCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGCC < 41bp 1 0.55675344932015 1 0.490714281797409 experiment 0.8864931013597 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558283 chr5:177558290 . . 0 28 hm5C_associated_SNPs_5496 0 0 1 0 2 Cytosol 1 0.500231643921062 1 0.999536712157876 hm5C_site_8401 DeepMRMD:1;iRNA_m5C:0.999536712157876 8402 chr5 177558290 177558290 1 + G A rs115379028 177558286 + 177558266 177558306 41 CCCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGCCGCC CCCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGCCGCC < 41bp 1 0.255924692188286 1 0.254406720399857 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558286 chr5:177558290 . . 0 25 hm5C_associated_SNPs_5497 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8402 DeepMRMD:1;iRNA_m5C:0.999536712157815 8403 chr5 177558290 177558290 1 + G A rs115379028 177558287 + 177558267 177558307 41 CCAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGCCGCCT CCAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGCCGCCT < 41bp 1 0.0604381244030737 1 0.0663478970527649 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558287 chr5:177558290 . . 0 24 hm5C_associated_SNPs_5498 0 0 1 0 2 Cytosol 1 0.500231643921096 1 0.999536712157807 hm5C_site_8403 DeepMRMD:1;iRNA_m5C:0.999536712157807 8404 chr5 177558290 177558290 1 + G A rs115379028 177558288 + 177558268 177558308 41 CAGACTCATAGGTCCCGGCCCAGCCCCCGAAGAGCCGCCTC CAGACTCATAGGTCCCGGCCCAACCCCCGAAGAGCCGCCTC < 41bp 1 0.278261747247601 1 0.0467808544635773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RMND5B ENSG00000145916 UTR5 Human protein_coding chr5:177558288 chr5:177558290 . . 0 23 hm5C_associated_SNPs_5499 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8404 DeepMRMD:1;iRNA_m5C:0.999536712157815 8405 chr5 177565228 177565228 1 + G A rs551568824 177565214 + 177565194 177565234 41 GTGAGCGGAGCCTGGAGGAGCTGCTGCACTACGTGGGCCAG GTGAGCGGAGCCTGGAGGAGCTGCTGCACTACGTAGGCCAG < 41bp 1 0.66541720389292 1 0.225342273712158 experiment 0.66916559221416 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RMND5B ENSG00000145916 CDS Human protein_coding chr5:177565214 chr5:177565228 synonymous SNV . 0 35 hm5C_associated_SNPs_5500 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8405 DeepMRMD:1;iRNA_m5C:0.999536712157815 8406 chr5 177631560 177631560 1 + C G rs146897728 177631545 + 177631525 177631565 41 GGCATTGTCAGGCGGCGGCACCGCGCGGGACGGAGCTTGGC GGCATTGTCAGGCGGCGGCACCGCGCGGGACGGAGGTTGGC < 41bp 1 0.401866664548175 1 0.410072058439255 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control HNRNPAB ENSG00000197451 UTR5 Human protein_coding chr5:177631545 chr5:177631560 . . 0 36 hm5C_associated_SNPs_5501 0 0 1 0 0 Cytosol 1 0.500231643926382 1 0.999536712147235 hm5C_site_8406 DeepMRMD:1;iRNA_m5C:0.999536712147235 8407 chr5 177631564 177631564 1 + G C rs370707939 177631545 + 177631525 177631565 41 GGCATTGTCAGGCGGCGGCACCGCGCGGGACGGAGCTTGGC GGCATTGTCAGGCGGCGGCACCGCGCGGGACGGAGCTTGCC < 41bp 1 0.431601597201913 1 0.349711716175079 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control HNRNPAB ENSG00000197451 UTR5 Human protein_coding chr5:177631545 chr5:177631564 . . 0 40 hm5C_associated_SNPs_5502 0 0 1 0 0 Cytosol 1 0.500241559974957 1 0.999516880050086 hm5C_site_8407 DeepMRMD:1;iRNA_m5C:0.999516880050086 8408 chr5 178353643 178353643 1 + G A rs113421376 178353631 + 178353611 178353651 41 AGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTG AGGTTCACGCCATTCTCCTGCCTCAGCCTCCTAAGTAGCTG < 41bp 1 0.168605625797062 1 0.0483560562133789 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353631 chr5:178353643 . . 0 33 hm5C_associated_SNPs_5503 0 0 0 0 1 Nucleus 1 0.50023164392133 1 0.99953671215734 hm5C_site_8408 DeepMRMD:1;iRNA_m5C:0.99953671215734 8409 chr5 178353643 178353643 1 + G A rs113421376 178353632 + 178353612 178353652 41 GGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGG GGTTCACGCCATTCTCCTGCCTCAGCCTCCTAAGTAGCTGG < 41bp 1 0.379971332888316 1 0.208552747964859 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353632 chr5:178353643 . . 0 32 hm5C_associated_SNPs_5504 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_8409 DeepMRMD:1;iRNA_m5C:0.999536712157816 8410 chr5 178353643 178353643 1 + G A rs113421376 178353634 + 178353614 178353654 41 TTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGA TTCACGCCATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGA < 41bp 1 0.312555738519206 1 0.367197781801224 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353634 chr5:178353643 . . 0 30 hm5C_associated_SNPs_5505 0 0 0 0 1 Nucleus 1 0.500231643921113 1 0.999536712157775 hm5C_site_8410 DeepMRMD:1;iRNA_m5C:0.999536712157775 8411 chr5 178353643 178353643 1 + G A rs113421376 178353637 + 178353617 178353657 41 ACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTA ACGCCATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGACTA < 41bp 1 0.0712534327864609 1 0.237000972032547 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353637 chr5:178353643 . . 0 27 hm5C_associated_SNPs_5506 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8411 DeepMRMD:1;iRNA_m5C:0.999536712157815 8412 chr5 178353643 178353643 1 + G A rs113421376 178353638 + 178353618 178353658 41 CGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAC CGCCATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGACTAC < 41bp 1 0.239101519573896 1 0.355443775653839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353638 chr5:178353643 . . 0 26 hm5C_associated_SNPs_5507 0 0 0 0 1 Nucleus 1 0.500231513004655 1 0.999536973990689 hm5C_site_8412 DeepMRMD:1;iRNA_m5C:0.999536973990689 8413 chr5 178353657 178353657 1 + A G rs34797550 178353637 + 178353617 178353657 41 ACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTA ACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTG < 41bp 1 0.0737396971232484 1 0.184089779853821 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353637 chr5:178353657 . . 0 41 hm5C_associated_SNPs_5508 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8413 DeepMRMD:1;iRNA_m5C:0.999536712157815 8414 chr5 178353657 178353657 1 + A G rs34797550 178353638 + 178353618 178353658 41 CGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAC CGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTGC < 41bp 1 0.270783797232188 1 0.564686477184296 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP2 ENSG00000198939 UTR5 Human protein_coding chr5:178353638 chr5:178353657 . . 0 40 hm5C_associated_SNPs_5509 0 0 0 0 1 Nucleus 1 0.500231396438403 0.870627045631408 0.999537207123194 hm5C_site_8414 DeepMRMD:0.870627045631408;iRNA_m5C:0.999537207123194 8415 chr5 179012818 179012818 1 + A G rs376303394 179012813 + 179012793 179012833 41 ACAGCTGCACAGTTGGGGATCTTCAAACCAAGATAGATGGC ACAGCTGCACAGTTGGGGATCTTCAGACCAAGATAGATGGC < 41bp 1 0.299080476893673 1 0.137283325195312 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179012813 chr5:179012818 synonymous SNV . 0 26 hm5C_associated_SNPs_5510 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8415 DeepMRMD:1;iRNA_m5C:0.999536712157815 8416 chr5 179025789 179025789 1 + G A rs72824522 179025776 + 179025756 179025796 41 ACAGCACGAGAAAGACACTTCCTCTCTACTCAGGATGGAGC ACAGCACGAGAAAGACACTTCCTCTCTACTCAGAATGGAGC < 41bp 1 0.0370006210934381 1 0.116391271352768 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179025776 chr5:179025789 synonymous SNV . 0 34 hm5C_associated_SNPs_5511 0 0 1 0 2 Ribosome 1 0.500231643898352 1 0.999536712203295 hm5C_site_8416 DeepMRMD:1;iRNA_m5C:0.999536712203295 8417 chr5 179146757 179146757 1 + C A rs143596594 179146740 + 179146720 179146760 41 AGGCTGGTTAGATGATGAGCCTGAGTACGTACCTGATCCAG AGGCTGGTTAGATGATGAGCCTGAGTACGTACCTGATACAG < 41bp 1 0.672077066530938 1 0.36231255531311 experiment 0.655845866938124 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146740 chr5:179146757 nonsynonymous SNV 0.185 4 38 hm5C_associated_SNPs_5512 0 0 1 0 2 Nucleus 1 0.500231643876699 1 0.999536712246603 hm5C_site_8417 DeepMRMD:1;iRNA_m5C:0.999536712246603 8418 chr5 179146757 179146757 1 + C A rs143596594 179146752 + 179146732 179146772 41 TGATGAGCCTGAGTACGTACCTGATCCAGACGCAGAGAAAC TGATGAGCCTGAGTACGTACCTGATACAGACGCAGAGAAAC < 41bp 1 0.485220995321519 1 0.130354642868042 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146752 chr5:179146757 nonsynonymous SNV 0.185 4 26 hm5C_associated_SNPs_5513 0 0 1 0 2 Nucleus 1 0.500545663207646 1 0.998908673584708 hm5C_site_8418 DeepMRMD:1;iRNA_m5C:0.998908673584708 8419 chr5 179146757 179146757 1 + C A rs143596594 179146762 + 179146742 179146782 41 GAGTACGTACCTGATCCAGACGCAGAGAAACCTGAGGATTG GAGTACGTACCTGATACAGACGCAGAGAAACCTGAGGATTG < 41bp 1 0.572576918069242 1 0.0532509088516235 experiment 0.854846163861516 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146762 chr5:179146757 nonsynonymous SNV 0.185 4 16 hm5C_associated_SNPs_5514 0 0 1 0 2 Nucleus 1 0.500203518492115 1 0.99959296301577 hm5C_site_8419 DeepMRMD:1;iRNA_m5C:0.99959296301577 8420 chr5 179146757 179146757 1 + C A rs143596594 179146764 + 179146744 179146784 41 GTACGTACCTGATCCAGACGCAGAGAAACCTGAGGATTGGT GTACGTACCTGATACAGACGCAGAGAAACCTGAGGATTGGT < 41bp 1 0.46274990842438 1 0.284559905529022 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146764 chr5:179146757 nonsynonymous SNV 0.185 4 14 hm5C_associated_SNPs_5515 0 0 1 0 2 Nucleus 1 0.500231643013404 1 0.999536713973193 hm5C_site_8420 DeepMRMD:1;iRNA_m5C:0.999536713973193 8421 chr5 179153686 179153686 1 + A G rs111809764 179153689 + 179153669 179153709 41 CTTCTGTCTTAGAAGAGAAACAGAAAAGTGATGCTGAAGAA CTTCTGTCTTAGAAGAGGAACAGAAAAGTGATGCTGAAGAA < 41bp 1 0.551472454075919 1 0.406494617462158 experiment 0.897055091848163 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153689 chr5:179153686 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_5519 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8421 DeepMRMD:1;iRNA_m5C:0.999536712157815 8422 chr5 179159870 179159870 1 + G A rs529692246 179159860 + 179159840 179159880 41 TTTTAAGATGGCGGCCGCGGCGGTAGCGCGGAAAACAATGG TTTTAAGATGGCGGCCGCGGCGGTAGCGCGAAAAACAATGG < 41bp 1 0.552831749761173 1 0.522081255912781 experiment 0.894336500477653 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAML1 ENSG00000161021 UTR5 Human protein_coding chr5:179159860 chr5:179159870 . . 0 31 hm5C_associated_SNPs_5521 0 0 1 0 0 Ribosome 1 0.500231643921092 0.955837488174438 0.999536712157815 hm5C_site_8422 DeepMRMD:0.955837488174438;iRNA_m5C:0.999536712157815 8423 chr5 179238582 179238582 1 + A T rs550228062 179238580 + 179238560 179238600 41 CTCACTCTTCAAAGTGTCTGCGAGATTAATCTCTCATGGCC CTCACTCTTCAAAGTGTCTGCGTGATTAATCTCTCATGGCC < 41bp 1 0.251975420971869 1 0.255278527736664 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SQSTM1 ENSG00000161011 UTR5 Human protein_coding chr5:179238580 chr5:179238582 . . 0 23 hm5C_associated_SNPs_5522 0 0 0 0 0 Ribosome 1 0.500231641980206 1 0.999536716039588 hm5C_site_8423 DeepMRMD:1;iRNA_m5C:0.999536716039588 8424 chr5 179238583 179238583 1 + G A rs568252008 179238580 + 179238560 179238600 41 CTCACTCTTCAAAGTGTCTGCGAGATTAATCTCTCATGGCC CTCACTCTTCAAAGTGTCTGCGAAATTAATCTCTCATGGCC < 41bp 1 0.228198264938144 1 0.425259351730347 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SQSTM1 ENSG00000161011 UTR5 Human protein_coding chr5:179238580 chr5:179238583 . . 0 24 hm5C_associated_SNPs_5523 0 0 1 0 0 Ribosome 1 0.500231644008479 1 0.999536711983043 hm5C_site_8424 DeepMRMD:1;iRNA_m5C:0.999536711983043 8425 chr5 179247902 179247902 1 + G A rs189132632 179247909 + 179247889 179247929 41 GGCGGCTGCGACCGGGACGGCCCGTTTTCCGCCAGCTCGCC GGCGGCTGCGACCAGGACGGCCCGTTTTCCGCCAGCTCGCC < 41bp 1 0.364914284554715 1 0.0816205441951752 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SQSTM1 ENSG00000161011 UTR5 Human protein_coding chr5:179247909 chr5:179247902 . . 0 14 hm5C_associated_SNPs_5524 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_8425 DeepMRMD:1;iRNA_m5C:0.999536712157816 8426 chr5 179247902 179247902 1 + G A rs189132632 179247910 + 179247890 179247930 41 GCGGCTGCGACCGGGACGGCCCGTTTTCCGCCAGCTCGCCG GCGGCTGCGACCAGGACGGCCCGTTTTCCGCCAGCTCGCCG < 41bp 1 0.137399239182025 1 0.0403168201446533 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SQSTM1 ENSG00000161011 UTR5 Human protein_coding chr5:179247910 chr5:179247902 . . 0 13 hm5C_associated_SNPs_5525 0 0 1 0 0 Ribosome 1 0.500231643539027 1 0.999536712921945 hm5C_site_8426 DeepMRMD:1;iRNA_m5C:0.999536712921945 8427 chr5 179247902 179247902 1 + G A rs189132632 179247911 + 179247891 179247931 41 CGGCTGCGACCGGGACGGCCCGTTTTCCGCCAGCTCGCCGC CGGCTGCGACCAGGACGGCCCGTTTTCCGCCAGCTCGCCGC < 41bp 1 0.205706095858273 1 0.0194246172904968 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SQSTM1 ENSG00000161011 UTR5 Human protein_coding chr5:179247911 chr5:179247902 . . 0 12 hm5C_associated_SNPs_5526 0 0 1 0 0 Ribosome 1 0.500231643954152 1 0.999536712091697 hm5C_site_8427 DeepMRMD:1;iRNA_m5C:0.999536712091697 8428 chr5 179247912 179247912 1 + G A rs74523483 179247909 + 179247889 179247929 41 GGCGGCTGCGACCGGGACGGCCCGTTTTCCGCCAGCTCGCC GGCGGCTGCGACCGGGACGGCCCATTTTCCGCCAGCTCGCC < 41bp 1 0.214427524831543 1 0.116670548915863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SQSTM1 ENSG00000161011 UTR5 Human protein_coding chr5:179247909 chr5:179247912 . . 0 24 hm5C_associated_SNPs_5527 1 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_8428 DeepMRMD:1;iRNA_m5C:0.999536712157818 Paget disease of bone Paget disease of bone 8429 chr5 179247912 179247912 1 + G A rs74523483 179247910 + 179247890 179247930 41 GCGGCTGCGACCGGGACGGCCCGTTTTCCGCCAGCTCGCCG GCGGCTGCGACCGGGACGGCCCATTTTCCGCCAGCTCGCCG < 41bp 1 0.103648601040403 1 0.0269309878349304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SQSTM1 ENSG00000161011 UTR5 Human protein_coding chr5:179247910 chr5:179247912 . . 0 23 hm5C_associated_SNPs_5528 1 0 1 0 0 Ribosome 1 0.500231626811032 1 0.999536746377935 hm5C_site_8429 DeepMRMD:1;iRNA_m5C:0.999536746377935 Paget disease of bone Paget disease of bone 8430 chr5 179247912 179247912 1 + G A rs74523483 179247911 + 179247891 179247931 41 CGGCTGCGACCGGGACGGCCCGTTTTCCGCCAGCTCGCCGC CGGCTGCGACCGGGACGGCCCATTTTCCGCCAGCTCGCCGC < 41bp 1 0.200087513453001 1 0.0173423886299133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SQSTM1 ENSG00000161011 UTR5 Human protein_coding chr5:179247911 chr5:179247912 . . 0 22 hm5C_associated_SNPs_5529 1 0 1 0 0 Ribosome 1 0.500231728314555 1 0.99953654337089 hm5C_site_8430 DeepMRMD:1;iRNA_m5C:0.99953654337089 Paget disease of bone Paget disease of bone 8431 chr5 179264132 179264132 1 + T G rs1060271 179264121 + 179264101 179264141 41 AATGTTGGTTTCACTGAGAGCTGCCTCCTGGTCTCTTCACC AATGTTGGTTTCACTGAGAGCTGCCTCCTGGGCTCTTCACC < 41bp 1 0.179995349945269 1 0.0541068315505981 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SQSTM1 ENSG00000161010;ENSG00000161011 UTR3 Human other chr5:179264121 chr5:179264132 . . 0 32 hm5C_associated_SNPs_5530 1 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8431 DeepMRMD:1;iRNA_m5C:0.999536712157815 Paget disease of bone Paget disease of bone 8432 chr5 180591220 180591220 1 + G A rs368882647 180591202 + 180591182 180591222 41 CGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGA CGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCAGA < 41bp 1 0.406403170649904 1 0.169669330120087 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180591202 chr5:180591220 . . 0 39 hm5C_associated_SNPs_5532 0 0 1 0 0 unknown 1 0.500231643921095 1 0.999536712157811 hm5C_site_8432 DeepMRMD:1;iRNA_m5C:0.999536712157811 8433 chr5 180591220 180591220 1 + G A rs368882647 180591215 + 180591195 180591235 41 AAAGGTCCCCGGTTCGAAACCGGGCGGAAACAGAATCTTAT AAAGGTCCCCGGTTCGAAACCGGGCAGAAACAGAATCTTAT < 41bp 1 0.362575383800589 1 0.604468107223511 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180591215 chr5:180591220 . . 0 26 hm5C_associated_SNPs_5533 0 0 1 0 0 unknown 1 0.500231643921092 0.791063785552978 0.999536712157815 hm5C_site_8433 DeepMRMD:0.791063785552978;iRNA_m5C:0.999536712157815 8434 chr5 180591220 180591220 1 + G A rs368882647 180591219 + 180591199 180591239 41 GTCCCCGGTTCGAAACCGGGCGGAAACAGAATCTTATGCTT GTCCCCGGTTCGAAACCGGGCAGAAACAGAATCTTATGCTT < 41bp 1 0.444327622153677 1 0.110061496496201 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180591219 chr5:180591220 . . 0 22 hm5C_associated_SNPs_5534 0 0 1 0 0 unknown 1 0.500231643921085 1 0.99953671215783 hm5C_site_8434 DeepMRMD:1;iRNA_m5C:0.99953671215783 8435 chr5 180591222 180591222 1 + A G rs545580560 180591202 + 180591182 180591222 41 CGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGA CGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGG < 41bp 1 0.452002810890649 1 0.259178161621094 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180591202 chr5:180591222 . . 0 41 hm5C_associated_SNPs_5535 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8435 DeepMRMD:1;iRNA_m5C:0.999536712157815 8436 chr5 180591222 180591222 1 + A G rs545580560 180591215 + 180591195 180591235 41 AAAGGTCCCCGGTTCGAAACCGGGCGGAAACAGAATCTTAT AAAGGTCCCCGGTTCGAAACCGGGCGGGAACAGAATCTTAT < 41bp 1 0.441061112553767 1 0.633723974227905 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180591215 chr5:180591222 . . 0 28 hm5C_associated_SNPs_5536 0 0 1 0 0 unknown 1 0.500231643921092 0.73255205154419 0.999536712157815 hm5C_site_8436 DeepMRMD:0.73255205154419;iRNA_m5C:0.999536712157815 8437 chr5 180591225 180591225 1 + C T rs576208610 180591215 + 180591195 180591235 41 AAAGGTCCCCGGTTCGAAACCGGGCGGAAACAGAATCTTAT AAAGGTCCCCGGTTCGAAACCGGGCGGAAATAGAATCTTAT < 41bp 1 0.370179916327576 1 0.760161817073822 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180591215 chr5:180591225 . . 0 31 hm5C_associated_SNPs_5538 0 0 1 0 0 unknown 1 0.500231643921092 0.479676365852356 0.999536712157815 hm5C_site_8437 DeepMRMD:0.479676365852356;iRNA_m5C:0.999536712157815 8438 chr5 180591225 180591225 1 + C T rs576208610 180591219 + 180591199 180591239 41 GTCCCCGGTTCGAAACCGGGCGGAAACAGAATCTTATGCTT GTCCCCGGTTCGAAACCGGGCGGAAATAGAATCTTATGCTT < 41bp 1 0.549906180474342 1 0.425657451152802 experiment 0.900187639051316 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180591219 chr5:180591225 . . 0 27 hm5C_associated_SNPs_5539 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8438 DeepMRMD:1;iRNA_m5C:0.999536712157815 8439 chr5 180600671 180600671 1 + T A rs116343629 180600654 + 180600634 180600674 41 CAGGTATCCCATGCAGGTTTCCGTAGTGTAGTGGTTATCAC CAGGTATCCCATGCAGGTTTCCGTAGTGTAGTGGTTAACAC < 41bp 1 0.343746238587244 1 0.110570818185806 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600654 chr5:180600671 . . 0 38 hm5C_associated_SNPs_5540 0 0 1 0 0 unknown 1 0.500234087199123 1 0.999531825601754 hm5C_site_8439 DeepMRMD:1;iRNA_m5C:0.999531825601754 8440 chr5 180600671 180600671 1 + T A rs116343629 180600655 + 180600635 180600675 41 AGGTATCCCATGCAGGTTTCCGTAGTGTAGTGGTTATCACG AGGTATCCCATGCAGGTTTCCGTAGTGTAGTGGTTAACACG < 41bp 1 0.229479552047085 1 0.150115311145782 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600655 chr5:180600671 . . 0 37 hm5C_associated_SNPs_5541 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8440 DeepMRMD:1;iRNA_m5C:0.999536712157815 8441 chr5 180600671 180600671 1 + T A rs116343629 180600674 + 180600654 180600694 41 CCGTAGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAG CCGTAGTGTAGTGGTTAACACGTTCGCCTCACACGCGAAAG < 41bp 1 0.146449303653411 1 0.125709593296051 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600674 chr5:180600671 . . 0 18 hm5C_associated_SNPs_5543 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_8441 DeepMRMD:1;iRNA_m5C:0.999536712157815 8442 chr5 180600671 180600671 1 + T A rs116343629 180600681 + 180600661 180600701 41 GTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCG GTAGTGGTTAACACGTTCGCCTCACACGCGAAAGGTCCCCG < 41bp 1 0.159051919769359 1 0.225460261106491 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600681 chr5:180600671 . . 0 11 hm5C_associated_SNPs_5544 0 0 1 0 0 unknown 1 0.500345822888797 1 0.999308354222406 hm5C_site_8442 DeepMRMD:1;iRNA_m5C:0.999308354222406 8443 chr5 180600671 180600671 1 + T A rs116343629 180600683 + 180600663 180600703 41 AGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGT AGTGGTTAACACGTTCGCCTCACACGCGAAAGGTCCCCGGT < 41bp 1 0.281494054518298 1 0.169287443161011 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600683 chr5:180600671 . . 0 9 hm5C_associated_SNPs_5545 0 0 1 0 0 unknown 1 0.500231751793541 1 0.999536496412919 hm5C_site_8443 DeepMRMD:1;iRNA_m5C:0.999536496412919 8444 chr5 180600671 180600671 1 + T A rs116343629 180600685 + 180600665 180600705 41 TGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTC TGGTTAACACGTTCGCCTCACACGCGAAAGGTCCCCGGTTC < 41bp 1 0.579768953232505 1 0.375318616628647 experiment 0.84046209353499 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600685 chr5:180600671 . . 0 7 hm5C_associated_SNPs_5546 0 0 1 0 0 unknown 1 0.500231327562443 1 0.999537344875114 hm5C_site_8444 DeepMRMD:1;iRNA_m5C:0.999537344875114 8445 chr5 180600671 180600671 1 + T A rs116343629 180600689 + 180600669 180600709 41 TATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAA TAACACGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAA < 41bp 1 0.552590190405977 1 0.285468518733978 experiment 0.894819619188046 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600689 chr5:180600671 . . 0 3 hm5C_associated_SNPs_5547 0 0 1 0 0 unknown 1 0.500231646709434 1 0.999536706581133 hm5C_site_8445 DeepMRMD:1;iRNA_m5C:0.999536706581133 8446 chr5 180600680 180600680 1 + C T rs551071148 180600674 + 180600654 180600694 41 CCGTAGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAG CCGTAGTGTAGTGGTTATCACGTTCGTCTCACACGCGAAAG < 41bp 1 0.186879717586802 1 0.0725985467433929 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600674 chr5:180600680 . . 0 27 hm5C_associated_SNPs_5549 0 0 1 0 0 unknown 1 0.500231643873507 1 0.999536712252986 hm5C_site_8446 DeepMRMD:1;iRNA_m5C:0.999536712252986 8447 chr5 180600680 180600680 1 + C T rs551071148 180600681 + 180600661 180600701 41 GTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCG GTAGTGGTTATCACGTTCGTCTCACACGCGAAAGGTCCCCG < 41bp 1 0.172274158871403 1 0.426842331886292 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600681 chr5:180600680 . . 0 20 hm5C_associated_SNPs_5550 0 0 1 0 0 unknown 1 0.500258131651644 1 0.999483736696712 hm5C_site_8447 DeepMRMD:1;iRNA_m5C:0.999483736696712 8448 chr5 180600680 180600680 1 + C T rs551071148 180600683 + 180600663 180600703 41 AGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGT AGTGGTTATCACGTTCGTCTCACACGCGAAAGGTCCCCGGT < 41bp 1 0.360769335915252 1 0.199424624443054 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600683 chr5:180600680 . . 0 18 hm5C_associated_SNPs_5551 0 0 1 0 0 unknown 1 0.500231643828628 1 0.999536712342744 hm5C_site_8448 DeepMRMD:1;iRNA_m5C:0.999536712342744 8449 chr5 180600680 180600680 1 + C T rs551071148 180600685 + 180600665 180600705 41 TGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTC TGGTTATCACGTTCGTCTCACACGCGAAAGGTCCCCGGTTC < 41bp 1 0.522826608769222 1 0.407348871231079 experiment 0.954346782461555 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600685 chr5:180600680 . . 0 16 hm5C_associated_SNPs_5552 0 0 1 0 0 unknown 1 0.500231153331905 1 0.999537693336191 hm5C_site_8449 DeepMRMD:1;iRNA_m5C:0.999537693336191 8450 chr5 180600680 180600680 1 + C T rs551071148 180600689 + 180600669 180600709 41 TATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAA TATCACGTTCGTCTCACACGCGAAAGGTCCCCGGTTCGAAA < 41bp 1 0.569982537354909 1 0.40942656993866 experiment 0.860034925290182 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600689 chr5:180600680 . . 0 12 hm5C_associated_SNPs_5553 0 0 1 0 0 unknown 1 0.500231567287239 1 0.999536865425523 hm5C_site_8450 DeepMRMD:1;iRNA_m5C:0.999536865425523 8451 chr5 180600680 180600680 1 + C T rs551071148 180600697 + 180600677 180600717 41 TCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGG TCGTCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGG < 41bp 1 0.457304567666064 1 0.146454870700836 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600697 chr5:180600680 . . 0 4 hm5C_associated_SNPs_5554 0 0 1 0 0 unknown 1 0.50025309192247 1 0.999493816155059 hm5C_site_8451 DeepMRMD:1;iRNA_m5C:0.999493816155059 8452 chr5 180600680 180600680 1 + C T rs551071148 180600698 + 180600678 180600718 41 CGCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGA CGTCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGA < 41bp 1 0.547242296604993 1 0.220034748315811 experiment 0.905515406790014 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600698 chr5:180600680 . . 0 3 hm5C_associated_SNPs_5555 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_8452 DeepMRMD:1;iRNA_m5C:0.999536712157818 8453 chr5 180600680 180600680 1 + C T rs551071148 180600699 + 180600679 180600719 41 GCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAA GTCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAA < 41bp 1 0.404402758924317 1 0.161251395940781 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600699 chr5:180600680 . . 0 2 hm5C_associated_SNPs_5556 0 0 1 0 0 unknown 1 0.500231642691308 1 0.999536714617383 hm5C_site_8453 DeepMRMD:1;iRNA_m5C:0.999536714617383 8454 chr5 180600680 180600680 1 + C T rs551071148 180600700 + 180600680 180600720 41 CCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA TCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA < 41bp 1 0.26868106119999 1 0.0920111835002899 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600700 chr5:180600680 . . 0 1 hm5C_associated_SNPs_5557 0 0 1 0 0 unknown 1 0.500231643887645 1 0.99953671222471 hm5C_site_8454 DeepMRMD:1;iRNA_m5C:0.99953671222471 8455 chr5 180600702 180600702 1 + G C rs59711195 180600683 + 180600663 180600703 41 AGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGT AGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGCT < 41bp 1 0.285607391270343 1 0.178146153688431 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600683 chr5:180600702 . . 0 40 hm5C_associated_SNPs_5558 0 0 1 0 0 unknown 1 0.500231644248828 1 0.999536711502344 hm5C_site_8455 DeepMRMD:1;iRNA_m5C:0.999536711502344 8456 chr5 180600702 180600702 1 + G C rs59711195 180600685 + 180600665 180600705 41 TGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTC TGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGCTTC < 41bp 1 0.506500472078003 1 0.439252912998199 experiment 0.986999055843993 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600685 chr5:180600702 . . 0 38 hm5C_associated_SNPs_5559 0 0 1 0 0 unknown 1 0.500231660246095 1 0.99953667950781 hm5C_site_8456 DeepMRMD:1;iRNA_m5C:0.99953667950781 8457 chr5 180600702 180600702 1 + G C rs59711195 180600689 + 180600669 180600709 41 TATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAA TATCACGTTCGCCTCACACGCGAAAGGTCCCCGCTTCGAAA < 41bp 1 0.629030891955902 1 0.438525974750519 experiment 0.741938216088196 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600689 chr5:180600702 . . 0 34 hm5C_associated_SNPs_5560 0 0 1 0 0 unknown 1 0.500231643923904 1 0.999536712152193 hm5C_site_8457 DeepMRMD:1;iRNA_m5C:0.999536712152193 8458 chr5 180600702 180600702 1 + G C rs59711195 180600697 + 180600677 180600717 41 TCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGG TCGCCTCACACGCGAAAGGTCCCCGCTTCGAAACCGGGCGG < 41bp 1 0.367849062392915 1 0.117690175771713 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600697 chr5:180600702 . . 0 26 hm5C_associated_SNPs_5561 0 0 1 0 0 unknown 1 0.500231644001539 1 0.999536711996922 hm5C_site_8458 DeepMRMD:1;iRNA_m5C:0.999536711996922 8459 chr5 180600702 180600702 1 + G C rs59711195 180600698 + 180600678 180600718 41 CGCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGA CGCCTCACACGCGAAAGGTCCCCGCTTCGAAACCGGGCGGA < 41bp 1 0.213555398382269 1 0.0841213762760162 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600698 chr5:180600702 . . 0 25 hm5C_associated_SNPs_5562 0 0 1 0 0 unknown 1 0.500231643926245 1 0.999536712147509 hm5C_site_8459 DeepMRMD:1;iRNA_m5C:0.999536712147509 8460 chr5 180600702 180600702 1 + G C rs59711195 180600699 + 180600679 180600719 41 GCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAA GCCTCACACGCGAAAGGTCCCCGCTTCGAAACCGGGCGGAA < 41bp 1 0.237954859567272 1 0.0679504871368408 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600699 chr5:180600702 . . 0 24 hm5C_associated_SNPs_5563 0 0 1 0 0 unknown 1 0.500231644039822 1 0.999536711920357 hm5C_site_8460 DeepMRMD:1;iRNA_m5C:0.999536711920357 8461 chr5 180600702 180600702 1 + G C rs59711195 180600700 + 180600680 180600720 41 CCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA CCTCACACGCGAAAGGTCCCCGCTTCGAAACCGGGCGGAAA < 41bp 1 0.187265966225669 1 0.0444936454296112 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600700 chr5:180600702 . . 0 23 hm5C_associated_SNPs_5564 0 0 1 0 0 unknown 1 0.500231643921081 1 0.999536712157838 hm5C_site_8461 DeepMRMD:1;iRNA_m5C:0.999536712157838 8462 chr5 180600702 180600702 1 + G C rs59711195 180600705 + 180600685 180600725 41 CACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAACACCT CACGCGAAAGGTCCCCGCTTCGAAACCGGGCGGAAACACCT < 41bp 1 0.465356430792589 1 0.513351678848267 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600705 chr5:180600702 . . 0 18 hm5C_associated_SNPs_5565 0 0 1 0 0 unknown 1 0.500231643921093 0.973296642303466 0.999536712157815 hm5C_site_8462 DeepMRMD:0.973296642303466;iRNA_m5C:0.999536712157815 8463 chr5 180600702 180600702 1 + G C rs59711195 180600710 + 180600690 180600730 41 GAAAGGTCCCCGGTTCGAAACCGGGCGGAAACACCTCCTTC GAAAGGTCCCCGCTTCGAAACCGGGCGGAAACACCTCCTTC < 41bp 1 0.543466541228593 1 0.771967649459839 experiment 0.913066917542815 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600710 chr5:180600702 . . 0 13 hm5C_associated_SNPs_5566 0 0 1 0 0 unknown 1 0.500231643908728 0.456064701080322 0.999536712182544 hm5C_site_8463 DeepMRMD:0.456064701080322;iRNA_m5C:0.999536712182544 8464 chr5 180600702 180600702 1 + G C rs59711195 180600711 + 180600691 180600731 41 AAAGGTCCCCGGTTCGAAACCGGGCGGAAACACCTCCTTCT AAAGGTCCCCGCTTCGAAACCGGGCGGAAACACCTCCTTCT < 41bp 1 0.683105116190103 1 0.814606845378876 experiment 0.633789767619794 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600711 chr5:180600702 . . 0 12 hm5C_associated_SNPs_5567 0 0 1 0 0 unknown 1 0.500231643921092 0.370786309242248 0.999536712157815 hm5C_site_8464 DeepMRMD:0.370786309242248;iRNA_m5C:0.999536712157815 8465 chr5 180600702 180600702 1 + G C rs59711195 180600715 + 180600695 180600735 41 GTCCCCGGTTCGAAACCGGGCGGAAACACCTCCTTCTGCTT GTCCCCGCTTCGAAACCGGGCGGAAACACCTCCTTCTGCTT < 41bp 1 0.43210758125223 1 0.366351991891861 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600715 chr5:180600702 . . 0 8 hm5C_associated_SNPs_5568 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_8465 DeepMRMD:1;iRNA_m5C:0.999536712157814 8466 chr5 180600702 180600702 1 + G C rs59711195 180600721 + 180600701 180600741 41 GGTTCGAAACCGGGCGGAAACACCTCCTTCTGCTTTTTACC GCTTCGAAACCGGGCGGAAACACCTCCTTCTGCTTTTTACC < 41bp 1 0.339223644040755 1 0.0911526381969452 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180600721 chr5:180600702 . . 0 2 hm5C_associated_SNPs_5569 0 0 1 0 0 unknown 1 0.500231642073491 1 0.999536715853018 hm5C_site_8466 DeepMRMD:1;iRNA_m5C:0.999536715853018 8467 chr5 180614705 180614705 1 + G A rs79012589 180614706 + 180614686 180614726 41 ACCCAGCGGCAAAGAGGTAGCGTGGCCGAGCGGTCTAAGGC ACCCAGCGGCAAAGAGGTAACGTGGCCGAGCGGTCTAAGGC < 41bp 1 0.628980999050774 1 0.262404203414917 experiment 0.742038001898452 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614706 chr5:180614705 . . 0 20 hm5C_associated_SNPs_5570 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8467 DeepMRMD:1;iRNA_m5C:0.999536712157815 8468 chr5 180614705 180614705 1 + G A rs79012589 180614711 + 180614691 180614731 41 GCGGCAAAGAGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGG GCGGCAAAGAGGTAACGTGGCCGAGCGGTCTAAGGCGCTGG < 41bp 1 0.424273344826046 1 0.338586032390594 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614711 chr5:180614705 . . 0 15 hm5C_associated_SNPs_5571 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8468 DeepMRMD:1;iRNA_m5C:0.999536712157815 8469 chr5 180614705 180614705 1 + G A rs79012589 180614712 + 180614692 180614732 41 CGGCAAAGAGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGA CGGCAAAGAGGTAACGTGGCCGAGCGGTCTAAGGCGCTGGA < 41bp 1 0.475414698613978 1 0.741789221763611 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614712 chr5:180614705 . . 0 14 hm5C_associated_SNPs_5572 0 0 1 0 0 unknown 1 0.500231644750924 0.516421556472778 0.999536710498151 hm5C_site_8469 DeepMRMD:0.516421556472778;iRNA_m5C:0.999536710498151 8470 chr5 180614705 180614705 1 + G A rs79012589 180614716 + 180614696 180614736 41 AAAGAGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAA AAAGAGGTAACGTGGCCGAGCGGTCTAAGGCGCTGGATTAA < 41bp 1 0.271752268090272 1 0.709314107894897 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614716 chr5:180614705 . . 0 10 hm5C_associated_SNPs_5573 0 0 1 0 0 unknown 1 0.500231643910572 0.581371784210206 0.999536712178855 hm5C_site_8470 DeepMRMD:0.581371784210206;iRNA_m5C:0.999536712178855 8471 chr5 180614705 180614705 1 + G A rs79012589 180614720 + 180614700 180614740 41 AGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCT AGGTAACGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCT < 41bp 1 0.47637599065932 1 0.513361215591431 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614720 chr5:180614705 . . 0 6 hm5C_associated_SNPs_5574 0 0 1 0 0 unknown 1 0.500231643973952 0.973277568817138 0.999536712052096 hm5C_site_8471 DeepMRMD:0.973277568817138;iRNA_m5C:0.999536712052096 8472 chr5 180614724 180614724 1 + G T rs115619959 180614706 + 180614686 180614726 41 ACCCAGCGGCAAAGAGGTAGCGTGGCCGAGCGGTCTAAGGC ACCCAGCGGCAAAGAGGTAGCGTGGCCGAGCGGTCTAATGC < 41bp 1 0.64436461665467 1 0.269085854291916 experiment 0.71127076669066 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614706 chr5:180614724 . . 0 39 hm5C_associated_SNPs_5575 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8472 DeepMRMD:1;iRNA_m5C:0.999536712157815 8473 chr5 180614724 180614724 1 + G T rs115619959 180614711 + 180614691 180614731 41 GCGGCAAAGAGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGG GCGGCAAAGAGGTAGCGTGGCCGAGCGGTCTAATGCGCTGG < 41bp 1 0.430687957172298 1 0.146865755319595 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614711 chr5:180614724 . . 0 34 hm5C_associated_SNPs_5576 0 0 1 0 0 unknown 1 0.50023164392109 1 0.999536712157819 hm5C_site_8473 DeepMRMD:1;iRNA_m5C:0.999536712157819 8474 chr5 180614724 180614724 1 + G T rs115619959 180614712 + 180614692 180614732 41 CGGCAAAGAGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGA CGGCAAAGAGGTAGCGTGGCCGAGCGGTCTAATGCGCTGGA < 41bp 1 0.566762208222399 1 0.703843235969543 experiment 0.866475583555203 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614712 chr5:180614724 . . 0 33 hm5C_associated_SNPs_5577 0 0 1 0 0 unknown 1 0.500231647343821 0.592313528060914 0.999536705312357 hm5C_site_8474 DeepMRMD:0.592313528060914;iRNA_m5C:0.999536705312357 8475 chr5 180614724 180614724 1 + G T rs115619959 180614716 + 180614696 180614736 41 AAAGAGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAA AAAGAGGTAGCGTGGCCGAGCGGTCTAATGCGCTGGATTAA < 41bp 1 0.269403053662474 1 0.744948923587799 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614716 chr5:180614724 . . 0 29 hm5C_associated_SNPs_5578 0 0 1 0 0 unknown 1 0.500231643920782 0.510102152824402 0.999536712158437 hm5C_site_8475 DeepMRMD:0.510102152824402;iRNA_m5C:0.999536712158437 8476 chr5 180614724 180614724 1 + G T rs115619959 180614720 + 180614700 180614740 41 AGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCT AGGTAGCGTGGCCGAGCGGTCTAATGCGCTGGATTAAGGCT < 41bp 1 0.276611790231721 1 0.321369588375092 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614720 chr5:180614724 . . 0 25 hm5C_associated_SNPs_5579 0 0 1 0 0 unknown 1 0.500231643921132 1 0.999536712157736 hm5C_site_8476 DeepMRMD:1;iRNA_m5C:0.999536712157736 8477 chr5 180614739 180614739 1 + C G rs150051789 180614720 + 180614700 180614740 41 AGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCT AGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGGT < 41bp 1 0.473758806237377 1 0.485116064548492 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614720 chr5:180614739 . . 0 40 hm5C_associated_SNPs_5582 0 0 1 0 0 unknown 1 0.500231706676202 1 0.999536586647596 hm5C_site_8477 DeepMRMD:1;iRNA_m5C:0.999536586647596 8478 chr5 180614739 180614739 1 + C G rs150051789 180614746 + 180614726 180614766 41 CGCTGGATTAAGGCTCCAGTCTCTTCGGGGGCGTGGGTTCG CGCTGGATTAAGGGTCCAGTCTCTTCGGGGGCGTGGGTTCG < 41bp 1 0.256694893444921 1 0.158353358507156 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614746 chr5:180614739 . . 0 14 hm5C_associated_SNPs_5584 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8478 DeepMRMD:1;iRNA_m5C:0.999536712157815 8479 chr5 180614739 180614739 1 + C G rs150051789 180614748 + 180614728 180614768 41 CTGGATTAAGGCTCCAGTCTCTTCGGGGGCGTGGGTTCGAA CTGGATTAAGGGTCCAGTCTCTTCGGGGGCGTGGGTTCGAA < 41bp 1 0.446989160889141 1 0.349614322185516 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614748 chr5:180614739 . . 0 12 hm5C_associated_SNPs_5585 0 0 1 0 0 unknown 1 0.500231643922156 1 0.999536712155687 hm5C_site_8479 DeepMRMD:1;iRNA_m5C:0.999536712155687 8480 chr5 180614748 180614748 1 + C G rs571621440 180614746 + 180614726 180614766 41 CGCTGGATTAAGGCTCCAGTCTCTTCGGGGGCGTGGGTTCG CGCTGGATTAAGGCTCCAGTCTGTTCGGGGGCGTGGGTTCG < 41bp 1 0.313925291622556 1 0.0855984389781952 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614746 chr5:180614748 . . 0 23 hm5C_associated_SNPs_5587 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8480 DeepMRMD:1;iRNA_m5C:0.999536712157815 8481 chr5 180614770 180614770 1 + C T rs569033796 180614771 + 180614751 180614791 41 CGGGGGCGTGGGTTCGAATCCCACCGCTGCCAGTTTGTGGT CGGGGGCGTGGGTTCGAATTCCACCGCTGCCAGTTTGTGGT < 41bp 1 0.154420521460605 1 0.432666957378387 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614771 chr5:180614770 . . 0 20 hm5C_associated_SNPs_5590 0 0 1 0 0 unknown 1 0.500231643921132 1 0.999536712157735 hm5C_site_8481 DeepMRMD:1;iRNA_m5C:0.999536712157735 8482 chr5 180614770 180614770 1 + C T rs569033796 180614775 + 180614755 180614795 41 GGCGTGGGTTCGAATCCCACCGCTGCCAGTTTGTGGTAGTT GGCGTGGGTTCGAATTCCACCGCTGCCAGTTTGTGGTAGTT < 41bp 1 0.165347759985593 1 0.254794001579285 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614775 chr5:180614770 . . 0 16 hm5C_associated_SNPs_5592 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_8482 DeepMRMD:1;iRNA_m5C:0.999536712157818 8483 chr5 180614775 180614775 1 + C A rs572539960 180614770 + 180614750 180614790 41 TCGGGGGCGTGGGTTCGAATCCCACCGCTGCCAGTTTGTGG TCGGGGGCGTGGGTTCGAATCCCACAGCTGCCAGTTTGTGG < 41bp 1 0.141998461041 1 0.154730647802353 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614770 chr5:180614775 . . 0 26 hm5C_associated_SNPs_5594 0 0 1 0 0 unknown 1 0.500231643923791 1 0.999536712152417 hm5C_site_8483 DeepMRMD:1;iRNA_m5C:0.999536712152417 8484 chr5 180614775 180614775 1 + C A rs572539960 180614771 + 180614751 180614791 41 CGGGGGCGTGGGTTCGAATCCCACCGCTGCCAGTTTGTGGT CGGGGGCGTGGGTTCGAATCCCACAGCTGCCAGTTTGTGGT < 41bp 1 0.430622421815816 1 0.509156227111816 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614771 chr5:180614775 . . 0 25 hm5C_associated_SNPs_5595 0 0 1 0 0 unknown 1 0.500409533227933 0.981687545776368 0.999180933544133 hm5C_site_8484 DeepMRMD:0.981687545776368;iRNA_m5C:0.999180933544133 8485 chr5 180614775 180614775 1 + C A rs572539960 180614772 + 180614752 180614792 41 GGGGGCGTGGGTTCGAATCCCACCGCTGCCAGTTTGTGGTA GGGGGCGTGGGTTCGAATCCCACAGCTGCCAGTTTGTGGTA < 41bp 1 0.670488199240655 1 0.290841937065125 experiment 0.65902360151869 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180614772 chr5:180614775 . . 0 24 hm5C_associated_SNPs_5596 0 0 1 0 0 unknown 1 0.500231643915034 1 0.999536712169931 hm5C_site_8485 DeepMRMD:1;iRNA_m5C:0.999536712169931 8486 chr5 180633886 180633886 1 + T A rs150638197 180633880 + 180633860 180633900 41 GAGTAGGTGGGGATGTAGCTCAGTGGTAGAGCGCATGCTTT GAGTAGGTGGGGATGTAGCTCAGTGGAAGAGCGCATGCTTT < 41bp 1 0.65265665694066 1 0.841479182243347 experiment 0.69468668611868 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633880 chr5:180633886 . . 0 27 hm5C_associated_SNPs_5598 0 0 1 0 0 unknown 1 0.500231716573871 0.317041635513306 0.999536566852258 hm5C_site_8486 DeepMRMD:0.317041635513306;iRNA_m5C:0.999536566852258 8487 chr5 180633886 180633886 1 + T A rs150638197 180633891 + 180633871 180633911 41 GATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAG GATGTAGCTCAGTGGAAGAGCGCATGCTTTGCATGTATGAG < 41bp 1 0.31469222248528 1 0.119971632957458 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633891 chr5:180633886 . . 0 16 hm5C_associated_SNPs_5599 0 0 1 0 0 unknown 1 0.500231421221831 1 0.999537157556338 hm5C_site_8487 DeepMRMD:1;iRNA_m5C:0.999537157556338 8488 chr5 180633886 180633886 1 + T A rs150638197 180633893 + 180633873 180633913 41 TGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGC TGTAGCTCAGTGGAAGAGCGCATGCTTTGCATGTATGAGGC < 41bp 1 0.309850336151571 1 0.239897131919861 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633893 chr5:180633886 . . 0 14 hm5C_associated_SNPs_5600 0 0 1 0 0 unknown 1 0.500231640791911 1 0.999536718416179 hm5C_site_8488 DeepMRMD:1;iRNA_m5C:0.999536718416179 8489 chr5 180633886 180633886 1 + T A rs150638197 180633897 + 180633877 180633917 41 GCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGCCCCG GCTCAGTGGAAGAGCGCATGCTTTGCATGTATGAGGCCCCG < 41bp 1 0.314994945252442 1 0.0271032750606537 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633897 chr5:180633886 . . 0 10 hm5C_associated_SNPs_5601 0 0 1 0 0 unknown 1 0.499992605093384 1 1 hm5C_site_8489 DeepMRMD:1;iRNA_m5C:1 8490 chr5 180633886 180633886 1 + T A rs150638197 180633902 + 180633882 180633922 41 GTGGTAGAGCGCATGCTTTGCATGTATGAGGCCCCGGGTTC GTGGAAGAGCGCATGCTTTGCATGTATGAGGCCCCGGGTTC < 41bp 1 0.546663568746495 1 0.409780621528625 experiment 0.90667286250701 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633902 chr5:180633886 . . 0 5 hm5C_associated_SNPs_5602 0 0 1 0 0 unknown 1 0.500231659614509 1 0.999536680770983 hm5C_site_8490 DeepMRMD:1;iRNA_m5C:0.999536680770983 8491 chr5 180633932 180633932 1 + C T rs138838874 180633914 + 180633894 180633934 41 ATGCTTTGCATGTATGAGGCCCCGGGTTCGATCCCCGGCAT ATGCTTTGCATGTATGAGGCCCCGGGTTCGATCCCCGGTAT < 41bp 1 0.532951858381043 1 0.594560086727142 experiment 0.934096283237913 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633914 chr5:180633932 . . 0 39 hm5C_associated_SNPs_5603 0 0 1 0 0 unknown 1 0.500231643919621 0.810879826545716 0.999536712160757 hm5C_site_8491 DeepMRMD:0.810879826545716;iRNA_m5C:0.999536712160757 8492 chr5 180633932 180633932 1 + C T rs138838874 180633915 + 180633895 180633935 41 TGCTTTGCATGTATGAGGCCCCGGGTTCGATCCCCGGCATC TGCTTTGCATGTATGAGGCCCCGGGTTCGATCCCCGGTATC < 41bp 1 0.395652041727453 1 0.258678257465363 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633915 chr5:180633932 . . 0 38 hm5C_associated_SNPs_5604 0 0 1 0 0 unknown 1 0.50023218048974 1 0.99953563902052 hm5C_site_8492 DeepMRMD:1;iRNA_m5C:0.99953563902052 8493 chr5 180633932 180633932 1 + C T rs138838874 180633922 + 180633902 180633942 41 CATGTATGAGGCCCCGGGTTCGATCCCCGGCATCTCCAGTG CATGTATGAGGCCCCGGGTTCGATCCCCGGTATCTCCAGTG < 41bp 1 0.125765008986251 1 0.213226318359375 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633922 chr5:180633932 . . 0 31 hm5C_associated_SNPs_5605 0 0 1 0 0 unknown 1 0.500231643924312 1 0.999536712151377 hm5C_site_8493 DeepMRMD:1;iRNA_m5C:0.999536712151377 8494 chr5 180633932 180633932 1 + C T rs138838874 180633926 + 180633906 180633946 41 TATGAGGCCCCGGGTTCGATCCCCGGCATCTCCAGTGTAGT TATGAGGCCCCGGGTTCGATCCCCGGTATCTCCAGTGTAGT < 41bp 1 0.248774014182515 1 0.071910172700882 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633926 chr5:180633932 . . 0 27 hm5C_associated_SNPs_5606 0 0 1 0 0 unknown 1 0.500231643940543 1 0.999536712118914 hm5C_site_8494 DeepMRMD:1;iRNA_m5C:0.999536712118914 8495 chr5 180633932 180633932 1 + C T rs138838874 180633927 + 180633907 180633947 41 ATGAGGCCCCGGGTTCGATCCCCGGCATCTCCAGTGTAGTT ATGAGGCCCCGGGTTCGATCCCCGGTATCTCCAGTGTAGTT < 41bp 1 0.372950892646142 1 0.253485053777695 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633927 chr5:180633932 . . 0 26 hm5C_associated_SNPs_5607 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_8495 DeepMRMD:1;iRNA_m5C:0.999536712157816 8496 chr5 180633932 180633932 1 + C T rs138838874 180633928 + 180633908 180633948 41 TGAGGCCCCGGGTTCGATCCCCGGCATCTCCAGTGTAGTTT TGAGGCCCCGGGTTCGATCCCCGGTATCTCCAGTGTAGTTT < 41bp 1 0.346252657305948 1 0.0718247294425964 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633928 chr5:180633932 . . 0 25 hm5C_associated_SNPs_5608 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8496 DeepMRMD:1;iRNA_m5C:0.999536712157815 8497 chr5 180633932 180633932 1 + C T rs138838874 180633929 + 180633909 180633949 41 GAGGCCCCGGGTTCGATCCCCGGCATCTCCAGTGTAGTTTT GAGGCCCCGGGTTCGATCCCCGGTATCTCCAGTGTAGTTTT < 41bp 1 0.463203518882955 1 0.745768785476685 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633929 chr5:180633932 . . 0 24 hm5C_associated_SNPs_5609 0 0 1 0 0 unknown 1 0.500231643921092 0.50846242904663 0.999536712157815 hm5C_site_8497 DeepMRMD:0.50846242904663;iRNA_m5C:0.999536712157815 8498 chr5 180633932 180633932 1 + C T rs138838874 180633937 + 180633917 180633957 41 GGGTTCGATCCCCGGCATCTCCAGTGTAGTTTTGCACATTC GGGTTCGATCCCCGGTATCTCCAGTGTAGTTTTGCACATTC < 41bp 1 0.324463290750374 1 0.227269023656845 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633937 chr5:180633932 . . 0 16 hm5C_associated_SNPs_5611 0 0 1 0 0 unknown 1 0.500231644583086 1 0.999536710833828 hm5C_site_8498 DeepMRMD:1;iRNA_m5C:0.999536710833828 8499 chr5 180633932 180633932 1 + C T rs138838874 180633938 + 180633918 180633958 41 GGTTCGATCCCCGGCATCTCCAGTGTAGTTTTGCACATTCA GGTTCGATCCCCGGTATCTCCAGTGTAGTTTTGCACATTCA < 41bp 1 0.427597965578755 1 0.313256561756134 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514 upstream Human antisense chr5:180633938 chr5:180633932 . . 0 15 hm5C_associated_SNPs_5612 0 0 1 0 0 unknown 1 0.500231643921119 1 0.999536712157762 hm5C_site_8499 DeepMRMD:1;iRNA_m5C:0.999536712157762 8500 chr5 180634787 180634787 1 + T C rs142528986 180634767 + 180634747 180634787 41 CATCGGGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACT CATCGGGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACC < 41bp 1 0.380988836534921 1 0.393009275197983 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634767 chr5:180634787 . . 0 41 hm5C_associated_SNPs_5613 0 0 1 0 0 unknown 1 0.500231644114051 1 0.999536711771899 hm5C_site_8500 DeepMRMD:1;iRNA_m5C:0.999536711771899 8501 chr5 180634787 180634787 1 + T C rs142528986 180634779 + 180634759 180634799 41 GGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG GGCTAGCTCAGTCGGTAGAGCATGAGACCCTTAATCTCAGG < 41bp 1 0.669108676556594 1 0.316116094589233 experiment 0.661782646886813 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634779 chr5:180634787 . . 0 29 hm5C_associated_SNPs_5615 0 0 1 0 0 unknown 1 0.500231643814259 1 0.999536712371482 hm5C_site_8501 DeepMRMD:1;iRNA_m5C:0.999536712371482 8502 chr5 180634787 180634787 1 + T C rs142528986 180634786 + 180634766 180634806 41 TCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG TCAGTCGGTAGAGCATGAGACCCTTAATCTCAGGGTCGTGG < 41bp 1 0.0588683845259298 1 0.0109255611896515 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634786 chr5:180634787 . . 0 22 hm5C_associated_SNPs_5616 0 0 1 0 0 unknown 1 0.500231644335141 1 0.999536711329719 hm5C_site_8502 DeepMRMD:1;iRNA_m5C:0.999536711329719 8503 chr5 180634787 180634787 1 + T C rs142528986 180634788 + 180634768 180634808 41 AGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGT AGTCGGTAGAGCATGAGACCCTTAATCTCAGGGTCGTGGGT < 41bp 1 0.371010354450151 1 0.176915615797043 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634788 chr5:180634787 . . 0 20 hm5C_associated_SNPs_5617 0 0 1 0 0 unknown 1 0.500231627910589 1 0.999536744178821 hm5C_site_8503 DeepMRMD:1;iRNA_m5C:0.999536744178821 8504 chr5 180634787 180634787 1 + T C rs142528986 180634794 + 180634774 180634814 41 TAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC TAGAGCATGAGACCCTTAATCTCAGGGTCGTGGGTTCGAGC < 41bp 1 0.659465646753967 1 0.812954902648926 experiment 0.681068706492067 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634794 chr5:180634787 . . 0 14 hm5C_associated_SNPs_5618 0 0 1 0 0 unknown 1 0.500231565936456 0.374090194702148 0.999536868127088 hm5C_site_8504 DeepMRMD:0.374090194702148;iRNA_m5C:0.999536868127088 8505 chr5 180634787 180634787 1 + T C rs142528986 180634802 + 180634782 180634822 41 GAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTT GAGACCCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTT < 41bp 1 0.584601812625208 1 0.521346390247345 experiment 0.830796374749584 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634802 chr5:180634787 . . 0 6 hm5C_associated_SNPs_5619 0 0 1 0 0 unknown 1 0.500231729708365 0.95730721950531 0.999536540583269 hm5C_site_8505 DeepMRMD:0.95730721950531;iRNA_m5C:0.999536540583269 Tonsillectomy 8506 chr5 180634819 180634819 1 + C G rs181561952 180634802 + 180634782 180634822 41 GAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTT GAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCAGGTT < 41bp 1 0.564691495479304 1 0.445402354001999 experiment 0.870617009041392 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634802 chr5:180634819 . . 0 38 hm5C_associated_SNPs_5620 0 0 1 0 0 unknown 1 0.500231644093614 1 0.999536711812773 hm5C_site_8506 DeepMRMD:1;iRNA_m5C:0.999536711812773 Tonsillectomy 8507 chr5 180634819 180634819 1 + C G rs181561952 180634810 + 180634790 180634830 41 TAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCA TAATCTCAGGGTCGTGGGTTCGAGCCCCAGGTTGGGCGGCA < 41bp 1 0.430991234277562 1 0.345952570438385 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634810 chr5:180634819 . . 0 30 hm5C_associated_SNPs_5621 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8507 DeepMRMD:1;iRNA_m5C:0.999536712157815 Tonsillectomy 8508 chr5 180634819 180634819 1 + C G rs181561952 180634814 + 180634794 180634834 41 CTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTG CTCAGGGTCGTGGGTTCGAGCCCCAGGTTGGGCGGCAACTG < 41bp 1 0.539729431544277 1 0.0980809926986694 experiment 0.920541136911446 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634814 chr5:180634819 . . 0 26 hm5C_associated_SNPs_5622 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8508 DeepMRMD:1;iRNA_m5C:0.999536712157815 Tonsillectomy 8509 chr5 180634819 180634819 1 + C G rs181561952 180634815 + 180634795 180634835 41 TCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTGG TCAGGGTCGTGGGTTCGAGCCCCAGGTTGGGCGGCAACTGG < 41bp 1 0.359608764960703 1 0.335418045520782 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634815 chr5:180634819 . . 0 25 hm5C_associated_SNPs_5623 0 0 1 0 0 unknown 1 0.500231643918598 1 0.999536712162804 hm5C_site_8509 DeepMRMD:1;iRNA_m5C:0.999536712162804 Tonsillectomy 8510 chr5 180634819 180634819 1 + C G rs181561952 180634816 + 180634796 180634836 41 CAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTGGT CAGGGTCGTGGGTTCGAGCCCCAGGTTGGGCGGCAACTGGT < 41bp 1 0.496490507207708 1 0.363181948661804 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634816 chr5:180634819 . . 0 24 hm5C_associated_SNPs_5624 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8510 DeepMRMD:1;iRNA_m5C:0.999536712157815 Tonsillectomy 8511 chr5 180634819 180634819 1 + C G rs181561952 180634817 + 180634797 180634837 41 AGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTGGTC AGGGTCGTGGGTTCGAGCCCCAGGTTGGGCGGCAACTGGTC < 41bp 1 0.592446388975796 1 0.799032330513 experiment 0.815107222048407 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634817 chr5:180634819 . . 0 23 hm5C_associated_SNPs_5625 0 0 1 0 0 unknown 1 0.500231643780733 0.401935338974 0.999536712438535 hm5C_site_8511 DeepMRMD:0.401935338974;iRNA_m5C:0.999536712438535 Tonsillectomy 8512 chr5 180634823 180634823 1 + G A rs201268980 180634810 + 180634790 180634830 41 TAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCA TAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTAGGCGGCA < 41bp 1 0.404872912970184 1 0.540288627147675 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634810 chr5:180634823 . . 0 34 hm5C_associated_SNPs_5627 0 0 1 0 0 unknown 1 0.500231643921102 0.91942274570465 0.999536712157797 hm5C_site_8512 DeepMRMD:0.91942274570465;iRNA_m5C:0.999536712157797 8513 chr5 180634823 180634823 1 + G A rs201268980 180634814 + 180634794 180634834 41 CTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTG CTCAGGGTCGTGGGTTCGAGCCCCACGTTAGGCGGCAACTG < 41bp 1 0.420428996426866 1 0.0682411789894104 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634814 chr5:180634823 . . 0 30 hm5C_associated_SNPs_5628 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8513 DeepMRMD:1;iRNA_m5C:0.999536712157815 8514 chr5 180634823 180634823 1 + G A rs201268980 180634815 + 180634795 180634835 41 TCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTGG TCAGGGTCGTGGGTTCGAGCCCCACGTTAGGCGGCAACTGG < 41bp 1 0.124840084428877 1 0.106071144342422 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634815 chr5:180634823 . . 0 29 hm5C_associated_SNPs_5629 0 0 1 0 0 unknown 1 0.50023164391247 1 0.99953671217506 hm5C_site_8514 DeepMRMD:1;iRNA_m5C:0.99953671217506 8515 chr5 180634823 180634823 1 + G A rs201268980 180634816 + 180634796 180634836 41 CAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTGGT CAGGGTCGTGGGTTCGAGCCCCACGTTAGGCGGCAACTGGT < 41bp 1 0.281545482556558 1 0.108399510383606 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634816 chr5:180634823 . . 0 28 hm5C_associated_SNPs_5630 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8515 DeepMRMD:1;iRNA_m5C:0.999536712157815 8516 chr5 180634823 180634823 1 + G A rs201268980 180634817 + 180634797 180634837 41 AGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTGGTC AGGGTCGTGGGTTCGAGCCCCACGTTAGGCGGCAACTGGTC < 41bp 1 0.485860715023435 1 0.264947712421417 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634817 chr5:180634823 . . 0 27 hm5C_associated_SNPs_5631 0 0 1 0 0 unknown 1 0.500231643862899 1 0.999536712274203 hm5C_site_8516 DeepMRMD:1;iRNA_m5C:0.999536712274203 8517 chr5 180634823 180634823 1 + G A rs201268980 180634819 + 180634799 180634839 41 GGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTGGTCGT GGTCGTGGGTTCGAGCCCCACGTTAGGCGGCAACTGGTCGT < 41bp 1 0.47779391241488 1 0.164081990718842 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634819 chr5:180634823 . . 0 25 hm5C_associated_SNPs_5632 0 0 1 0 0 unknown 1 0.500231644142652 1 0.999536711714697 hm5C_site_8517 DeepMRMD:1;iRNA_m5C:0.999536711714697 8518 chr5 180634827 180634827 1 + G A rs73814519 180634810 + 180634790 180634830 41 TAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCA TAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCAGCA < 41bp 1 0.421253906084136 1 0.362013280391693 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634810 chr5:180634827 . . 0 38 hm5C_associated_SNPs_5634 0 0 1 0 0 unknown 1 0.500231643920996 1 0.999536712158008 hm5C_site_8518 DeepMRMD:1;iRNA_m5C:0.999536712158008 8519 chr5 180634827 180634827 1 + G A rs73814519 180634814 + 180634794 180634834 41 CTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTG CTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCAGCAACTG < 41bp 1 0.400808675797821 1 0.0686741471290588 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634814 chr5:180634827 . . 0 34 hm5C_associated_SNPs_5635 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8519 DeepMRMD:1;iRNA_m5C:0.999536712157815 8520 chr5 180634827 180634827 1 + G A rs73814519 180634815 + 180634795 180634835 41 TCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTGG TCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCAGCAACTGG < 41bp 1 0.142340005005043 1 0.179533213376999 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634815 chr5:180634827 . . 0 33 hm5C_associated_SNPs_5636 0 0 1 0 0 unknown 1 0.500231599253833 1 0.999536801492334 hm5C_site_8520 DeepMRMD:1;iRNA_m5C:0.999536801492334 8521 chr5 180634827 180634827 1 + G A rs73814519 180634816 + 180634796 180634836 41 CAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTGGT CAGGGTCGTGGGTTCGAGCCCCACGTTGGGCAGCAACTGGT < 41bp 1 0.287185439375344 1 0.08407062292099 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634816 chr5:180634827 . . 0 32 hm5C_associated_SNPs_5637 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8521 DeepMRMD:1;iRNA_m5C:0.999536712157815 8522 chr5 180634827 180634827 1 + G A rs73814519 180634817 + 180634797 180634837 41 AGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTGGTC AGGGTCGTGGGTTCGAGCCCCACGTTGGGCAGCAACTGGTC < 41bp 1 0.522387125011662 1 0.286219835281372 experiment 0.955225749976675 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634817 chr5:180634827 . . 0 31 hm5C_associated_SNPs_5638 0 0 1 0 0 unknown 1 0.500231546261528 1 0.999536907476944 hm5C_site_8522 DeepMRMD:1;iRNA_m5C:0.999536907476944 8523 chr5 180634827 180634827 1 + G A rs73814519 180634819 + 180634799 180634839 41 GGTCGTGGGTTCGAGCCCCACGTTGGGCGGCAACTGGTCGT GGTCGTGGGTTCGAGCCCCACGTTGGGCAGCAACTGGTCGT < 41bp 1 0.348216779532363 1 0.217935711145401 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634819 chr5:180634827 . . 0 29 hm5C_associated_SNPs_5639 0 0 1 0 0 unknown 1 0.50023163692101 1 0.99953672615798 hm5C_site_8523 DeepMRMD:1;iRNA_m5C:0.99953672615798 8524 chr5 180634827 180634827 1 + G A rs73814519 180634826 + 180634806 180634846 41 GGTTCGAGCCCCACGTTGGGCGGCAACTGGTCGTTTTAGTC GGTTCGAGCCCCACGTTGGGCAGCAACTGGTCGTTTTAGTC < 41bp 1 0.614630518986084 1 0.233150690793991 experiment 0.770738962027832 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM7;MIR4638 ENSG00000248514;ENSG00000146063 intergenic Human other chr5:180634826 chr5:180634827 . . 0 22 hm5C_associated_SNPs_5640 0 0 1 0 0 unknown 1 0.50023164391986 1 0.999536712160279 hm5C_site_8524 DeepMRMD:1;iRNA_m5C:0.999536712160279 8525 chr6 1313470 1313470 1 + C T rs4435985 1313458 + 1313438 1313478 41 GTGCGCCACAACCTTTCGCTCAACGACTGCTTCGTCAAGGT GTGCGCCACAACCTTTCGCTCAACGACTGCTTTGTCAAGGT < 41bp 1 0.451364105425659 1 0.0942358374595642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXQ1 ENSG00000164379 CDS Human protein_coding chr6:1313458 chr6:1313470 synonymous SNV . 0 33 hm5C_associated_SNPs_5641 0 0 1 0 0 exosome 1 0.500230966819945 1 0.999538066360109 hm5C_site_8525 DeepMRMD:1;iRNA_m5C:0.999538066360109 8526 chr6 1313667 1313667 1 + C T rs557104756 1313653 + 1313633 1313673 41 GCCCCGGGCCTCCCCGCCGCCCCGCCGCCCGCGCCCGCCGC GCCCCGGGCCTCCCCGCCGCCCCGCCGCCCGCGCTCGCCGC < 41bp 1 0.536133481799907 1 0.492312222719193 experiment 0.927733036400187 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXQ1 ENSG00000164379 CDS Human protein_coding chr6:1313653 chr6:1313667 nonsynonymous SNV 0.002 1 35 hm5C_associated_SNPs_5642 0 0 1 0 0 exosome 1 0.500231873224329 1 0.999536253551342 hm5C_site_8526 DeepMRMD:1;iRNA_m5C:0.999536253551342 8527 chr6 1313667 1313667 1 + C T rs557104756 1313666 + 1313646 1313686 41 CCGCCGCCCCGCCGCCCGCGCCCGCCGCCCCGGCCTCGCCC CCGCCGCCCCGCCGCCCGCGCTCGCCGCCCCGGCCTCGCCC < 41bp 1 0.678631115749631 1 0.201106131076813 experiment 0.642737768500739 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXQ1 ENSG00000164379 CDS Human protein_coding chr6:1313666 chr6:1313667 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_5643 0 0 1 0 0 exosome 1 0.500231642498169 1 0.999536715003662 hm5C_site_8527 DeepMRMD:1;iRNA_m5C:0.999536715003662 8528 chr6 1313667 1313667 1 + C T rs557104756 1313671 + 1313651 1313691 41 GCCCCGCCGCCCGCGCCCGCCGCCCCGGCCTCGCCCCGCAT GCCCCGCCGCCCGCGCTCGCCGCCCCGGCCTCGCCCCGCAT < 41bp 1 0.59334124789938 1 0.255413621664047 experiment 0.813317504201239 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXQ1 ENSG00000164379 CDS Human protein_coding chr6:1313671 chr6:1313667 nonsynonymous SNV 0.002 1 17 hm5C_associated_SNPs_5644 0 0 1 0 0 exosome 1 0.500231533815882 1 0.999536932368235 hm5C_site_8528 DeepMRMD:1;iRNA_m5C:0.999536932368235 8529 chr6 1313667 1313667 1 + C T rs557104756 1313673 + 1313653 1313693 41 CCCGCCGCCCGCGCCCGCCGCCCCGGCCTCGCCCCGCATGC CCCGCCGCCCGCGCTCGCCGCCCCGGCCTCGCCCCGCATGC < 41bp 1 0.561990419995884 1 0.0831834673881531 experiment 0.876019160008231 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXQ1 ENSG00000164379 CDS Human protein_coding chr6:1313673 chr6:1313667 nonsynonymous SNV 0.002 1 15 hm5C_associated_SNPs_5645 0 0 1 0 0 exosome 1 0.500231643918427 1 0.999536712163146 hm5C_site_8529 DeepMRMD:1;iRNA_m5C:0.999536712163146 8530 chr6 1313667 1313667 1 + C T rs557104756 1313674 + 1313654 1313694 41 CCGCCGCCCGCGCCCGCCGCCCCGGCCTCGCCCCGCATGCG CCGCCGCCCGCGCTCGCCGCCCCGGCCTCGCCCCGCATGCG < 41bp 1 0.535414401581325 1 0.264484405517578 experiment 0.929171196837349 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXQ1 ENSG00000164379 CDS Human protein_coding chr6:1313674 chr6:1313667 nonsynonymous SNV 0.002 1 14 hm5C_associated_SNPs_5646 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8530 DeepMRMD:1;iRNA_m5C:0.999536712157815 8531 chr6 1313667 1313667 1 + C T rs557104756 1313675 + 1313655 1313695 41 CGCCGCCCGCGCCCGCCGCCCCGGCCTCGCCCCGCATGCGC CGCCGCCCGCGCTCGCCGCCCCGGCCTCGCCCCGCATGCGC < 41bp 1 0.553664793919916 1 0.217990517616272 experiment 0.892670412160169 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXQ1 ENSG00000164379 CDS Human protein_coding chr6:1313675 chr6:1313667 nonsynonymous SNV 0.002 1 13 hm5C_associated_SNPs_5647 0 0 1 0 0 exosome 1 0.5002321326648 1 0.999535734670399 hm5C_site_8531 DeepMRMD:1;iRNA_m5C:0.999535734670399 8532 chr6 1390200 1390200 1 + G C rs562183008 1390201 + 1390181 1390221 41 AGATGACCACCGAGGGCGGGCCGCCGCCGGCCCCGCTCCGC AGATGACCACCGAGGGCGGCCCGCCGCCGGCCCCGCTCCGC < 41bp 1 0.436809714657063 1 0.142937839031219 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1390201 chr6:1390200 synonymous SNV . 0 20 hm5C_associated_SNPs_5648 0 0 0 0 0 exosome 1 0.50023164392107 1 0.99953671215786 hm5C_site_8532 DeepMRMD:1;iRNA_m5C:0.99953671215786 8533 chr6 1390200 1390200 1 + G C rs562183008 1390204 + 1390184 1390224 41 TGACCACCGAGGGCGGGCCGCCGCCGGCCCCGCTCCGCCGC TGACCACCGAGGGCGGCCCGCCGCCGGCCCCGCTCCGCCGC < 41bp 1 0.689550811231408 1 0.537364721298218 experiment 0.620898377537183 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1390204 chr6:1390200 synonymous SNV . 0 17 hm5C_associated_SNPs_5649 0 0 0 0 0 exosome 1 0.50023154492303 0.925270557403564 0.999536910153939 hm5C_site_8533 DeepMRMD:0.925270557403564;iRNA_m5C:0.999536910153939 8534 chr6 1611569 1611569 1 + C T rs79691946 1611557 + 1611537 1611577 41 ACGGTGCGGATTCCGCGCCGCCGCCGCCCGCGCCCTCCGCC ACGGTGCGGATTCCGCGCCGCCGCCGCCCGCGTCCTCCGCC < 41bp 1 0.500548338465915 1 0.0995873510837555 experiment 0.998903323068171 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXC1 ENSG00000054598 CDS Human protein_coding chr6:1611557 chr6:1611569 nonsynonymous SNV 0.012 1 33 hm5C_associated_SNPs_5650 3 0 1 0 0 Cytosol 1 0.500231643920575 1 0.999536712158849 hm5C_site_8534 DeepMRMD:1;iRNA_m5C:0.999536712158849 Iridogoniodysgenesis type1 Iridogoniodysgenesis type1 8535 chr6 1611569 1611569 1 + C T rs79691946 1611560 + 1611540 1611580 41 GTGCGGATTCCGCGCCGCCGCCGCCCGCGCCCTCCGCCCCG GTGCGGATTCCGCGCCGCCGCCGCCCGCGTCCTCCGCCCCG < 41bp 1 0.591451669199848 1 0.154333651065826 experiment 0.817096661600304 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXC1 ENSG00000054598 CDS Human protein_coding chr6:1611560 chr6:1611569 nonsynonymous SNV 0.012 1 30 hm5C_associated_SNPs_5651 3 0 1 0 0 Cytosol 1 0.500231510423857 1 0.999536979152286 hm5C_site_8535 DeepMRMD:1;iRNA_m5C:0.999536979152286 Iridogoniodysgenesis type1 Iridogoniodysgenesis type1 8536 chr6 1611569 1611569 1 + C T rs79691946 1611563 + 1611543 1611583 41 CGGATTCCGCGCCGCCGCCGCCCGCGCCCTCCGCCCCGCCG CGGATTCCGCGCCGCCGCCGCCCGCGTCCTCCGCCCCGCCG < 41bp 1 0.600841028173857 1 0.724738717079163 experiment 0.798317943652286 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXC1 ENSG00000054598 CDS Human protein_coding chr6:1611563 chr6:1611569 nonsynonymous SNV 0.012 1 27 hm5C_associated_SNPs_5653 3 0 1 0 0 Cytosol 1 0.500231643921092 0.550522565841674 0.999536712157815 hm5C_site_8536 DeepMRMD:0.550522565841674;iRNA_m5C:0.999536712157815 Iridogoniodysgenesis type1 Iridogoniodysgenesis type1 8537 chr6 1611569 1611569 1 + C T rs79691946 1611567 + 1611547 1611587 41 TTCCGCGCCGCCGCCGCCCGCGCCCTCCGCCCCGCCGCCGC TTCCGCGCCGCCGCCGCCCGCGTCCTCCGCCCCGCCGCCGC < 41bp 1 0.500343383944355 1 0.124660640954971 experiment 0.99931323211129 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXC1 ENSG00000054598 CDS Human protein_coding chr6:1611567 chr6:1611569 nonsynonymous SNV 0.012 1 23 hm5C_associated_SNPs_5654 3 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8537 DeepMRMD:1;iRNA_m5C:0.999536712157815 Iridogoniodysgenesis type1 Iridogoniodysgenesis type1 8538 chr6 1611569 1611569 1 + C T rs79691946 1611573 + 1611553 1611593 41 GCCGCCGCCGCCCGCGCCCTCCGCCCCGCCGCCGCACCATA GCCGCCGCCGCCCGCGTCCTCCGCCCCGCCGCCGCACCATA < 41bp 1 0.42936187365424 1 0.47562563419342 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXC1 ENSG00000054598 CDS Human protein_coding chr6:1611573 chr6:1611569 nonsynonymous SNV 0.012 1 17 hm5C_associated_SNPs_5655 3 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_8538 DeepMRMD:1;iRNA_m5C:0.999536712157816 Iridogoniodysgenesis type1 Iridogoniodysgenesis type1 8539 chr6 1611569 1611569 1 + C T rs79691946 1611577 + 1611557 1611597 41 CCGCCGCCCGCGCCCTCCGCCCCGCCGCCGCACCATAGCCA CCGCCGCCCGCGTCCTCCGCCCCGCCGCCGCACCATAGCCA < 41bp 1 0.300226317560999 1 0.0823521316051483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXC1 ENSG00000054598 CDS Human protein_coding chr6:1611577 chr6:1611569 nonsynonymous SNV 0.012 1 13 hm5C_associated_SNPs_5656 3 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8539 DeepMRMD:1;iRNA_m5C:0.999536712157815 Iridogoniodysgenesis type1 Iridogoniodysgenesis type1 8540 chr6 1611569 1611569 1 + C T rs79691946 1611578 + 1611558 1611598 41 CGCCGCCCGCGCCCTCCGCCCCGCCGCCGCACCATAGCCAG CGCCGCCCGCGTCCTCCGCCCCGCCGCCGCACCATAGCCAG < 41bp 1 0.362482545025608 1 0.0586803257465363 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXC1 ENSG00000054598 CDS Human protein_coding chr6:1611578 chr6:1611569 nonsynonymous SNV 0.012 1 12 hm5C_associated_SNPs_5657 3 0 1 0 0 Cytosol 1 0.500231643887101 1 0.999536712225799 hm5C_site_8540 DeepMRMD:1;iRNA_m5C:0.999536712225799 Iridogoniodysgenesis type1 Iridogoniodysgenesis type1 8541 chr6 3015772 3015772 1 + G A rs146678417 3015789 + 3015769 3015809 41 GCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA GCTATACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA < 41bp 1 0.394627439630788 1 0.129826933145523 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015789 chr6:3015772 synonymous SNV . 0 4 hm5C_associated_SNPs_5658 0 0 1 0 1 Ribosome 1 0.50023164392093 1 0.99953671215814 hm5C_site_8541 DeepMRMD:1;iRNA_m5C:0.99953671215814 8542 chr6 3015790 3015790 1 + A G rs1049115 3015789 + 3015769 3015809 41 GCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA GCTGTACTGGTTCAGCGTGCCGGCCATCCTGAAGGGCTGGA < 41bp 1 0.471314040090062 1 0.171331703662872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015789 chr6:3015790 synonymous SNV . 0 22 hm5C_associated_SNPs_5659 0 0 1 0 2 Ribosome 1 0.500231619805346 1 0.999536760389307 hm5C_site_8542 DeepMRMD:1;iRNA_m5C:0.999536760389307 8543 chr6 3152760 3152760 1 + T C rs2231370 3152743 + 3152723 3152763 41 CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTTGCG CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTCGCG < 41bp 1 0.136135156427032 1 0.455189645290375 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BPHL ENSG00000137274 CDS Human protein_coding chr6:3152743 chr6:3152760 nonsynonymous SNV 0.971 4 38 hm5C_associated_SNPs_5660 0 0 1 0 1 Ribosome 1 0.500231643593034 1 0.999536712813931 hm5C_site_8543 DeepMRMD:1;iRNA_m5C:0.999536712813931 8544 chr6 3259228 3259228 1 + G C rs555460327 3259245 + 3259225 3259265 41 CTGGCGCTGTGGGCCGGGAGCCGTGGGGCGGCATGGAGGGG CTGCCGCTGTGGGCCGGGAGCCGTGGGGCGGCATGGAGGGG < 41bp 1 0.674861755595519 1 0.395954877138138 experiment 0.650276488808961 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG4 ENSG00000180822 UTR5 Human protein_coding chr6:3259245 chr6:3259228 . . 0 4 hm5C_associated_SNPs_5661 0 0 1 0 0 Cytosol 1 0.500231643859604 1 0.999536712280792 hm5C_site_8544 DeepMRMD:1;iRNA_m5C:0.999536712280792 8545 chr6 5085840 5085840 1 + G C rs190012458 5085860 + 5085840 5085880 41 GGCGGTGGCGCTTCGGAGACCCCGAGTCCTGACGCTCAGCT CGCGGTGGCGCTTCGGAGACCCCGAGTCCTGACGCTCAGCT < 41bp 1 0.634095140056559 1 0.48762246966362 experiment 0.731809719886881 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R3G ENSG00000219607 CDS Human protein_coding chr6:5085860 chr6:5085840 nonsynonymous SNV 0.001 0 1 hm5C_associated_SNPs_5662 0 0 0 0 0 exosome 1 0.500231643921076 1 0.999536712157848 hm5C_site_8545 DeepMRMD:1;iRNA_m5C:0.999536712157848 8546 chr6 5261845 5261845 1 + A C rs2753246 5261846 + 5261826 5261866 41 GAGCGAACGAGCCTGCCGTACTTCTGATTTTGAAACACCTG GAGCGAACGAGCCTGCCGTCCTTCTGATTTTGAAACACCTG < 41bp 1 0.0714362927126098 1 0.0771406292915344 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FARS2 ENSG00000145982 UTR5 Human protein_coding chr6:5261846 chr6:5261845 . . 0 20 hm5C_associated_SNPs_5663 0 0 1 0 1 Ribosome 1 0.500242542012722 1 0.999514915974556 hm5C_site_8546 DeepMRMD:1;iRNA_m5C:0.999514915974556 8547 chr6 7231521 7231521 1 + C T rs148116530 7231530 + 7231510 7231550 41 GAAGAGCTGCCCCCGCTGGCCTCCATTGCCCAGATCATCTC GAAGAGCTGCCTCCGCTGGCCTCCATTGCCCAGATCATCTC < 41bp 1 0.604849984241402 1 0.955118775367737 experiment 0.790300031517195 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RREB1 ENSG00000124782 CDS Human protein_coding chr6:7231530 chr6:7231521 synonymous SNV . 0 12 hm5C_associated_SNPs_5664 0 0 1 0 0 Nucleus 1 0.500231644195083 0.0897624492645259 0.999536711609833 hm5C_site_8547 DeepMRMD:0.0897624492645259;iRNA_m5C:0.999536711609833 8548 chr6 7231523 7231523 1 + C T rs143874633 7231530 + 7231510 7231550 41 GAAGAGCTGCCCCCGCTGGCCTCCATTGCCCAGATCATCTC GAAGAGCTGCCCCTGCTGGCCTCCATTGCCCAGATCATCTC < 41bp 1 0.641993194424273 1 0.964523434638977 experiment 0.716013611151454 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RREB1 ENSG00000124782 CDS Human protein_coding chr6:7231530 chr6:7231523 nonsynonymous SNV 0.978 4 14 hm5C_associated_SNPs_5665 0 0 1 0 0 Nucleus 1 0.50023189564322 0.0709531307220459 0.99953620871356 hm5C_site_8548 DeepMRMD:0.0709531307220459;iRNA_m5C:0.99953620871356 8549 chr6 7250754 7250754 1 + A G rs75204207 7250772 + 7250752 7250792 41 TCAGCCAAGACCTCAGGGGTCCCCAGCCAGCCTGCTGCTGG TCGGCCAAGACCTCAGGGGTCCCCAGCCAGCCTGCTGCTGG < 41bp 1 0.238862449924821 1 0.0356840789318085 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RREB1 ENSG00000124782 UTR3 Human protein_coding chr6:7250772 chr6:7250754 . . 0 3 hm5C_associated_SNPs_5666 0 0 1 0 0 Nucleus 1 0.500231643921121 1 0.999536712157759 hm5C_site_8549 DeepMRMD:1;iRNA_m5C:0.999536712157759 8550 chr6 7250754 7250754 1 + A G rs75204207 7250773 + 7250753 7250793 41 CAGCCAAGACCTCAGGGGTCCCCAGCCAGCCTGCTGCTGGG CGGCCAAGACCTCAGGGGTCCCCAGCCAGCCTGCTGCTGGG < 41bp 1 0.0902010644560426 1 0.0779328346252441 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RREB1 ENSG00000124782 UTR3 Human protein_coding chr6:7250773 chr6:7250754 . . 0 2 hm5C_associated_SNPs_5667 0 0 1 0 0 Nucleus 1 0.500231643920804 1 0.999536712158392 hm5C_site_8550 DeepMRMD:1;iRNA_m5C:0.999536712158392 8551 chr6 7250754 7250754 1 + A G rs75204207 7250774 + 7250754 7250794 41 AGCCAAGACCTCAGGGGTCCCCAGCCAGCCTGCTGCTGGGG GGCCAAGACCTCAGGGGTCCCCAGCCAGCCTGCTGCTGGGG < 41bp 1 0.0829162727568724 1 0.0827374160289764 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RREB1 ENSG00000124782 UTR3 Human protein_coding chr6:7250774 chr6:7250754 . . 0 1 hm5C_associated_SNPs_5668 0 0 1 0 0 Nucleus 1 0.500231643909407 1 0.999536712181185 hm5C_site_8551 DeepMRMD:1;iRNA_m5C:0.999536712181185 8552 chr6 7572262 7572262 1 + A G rs2076304 7572244 + 7572224 7572264 41 AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGATC AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGGTC < 41bp 1 0.0414207772916497 1 0.0501182675361633 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572244 chr6:7572262 synonymous SNV . 0 39 hm5C_associated_SNPs_5669 4 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157817 hm5C_site_8552 DeepMRMD:1;iRNA_m5C:0.999536712157817 not specified not specified 8553 chr6 7579933 7579933 1 + G A rs28763964 7579952 + 7579932 7579972 41 AGATTGAAAGGTTGAGGGTTCTACTGCAGGAAGAAGGCACC AAATTGAAAGGTTGAGGGTTCTACTGCAGGAAGAAGGCACC < 41bp 1 0.184868812155402 1 0.277094721794128 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579952 chr6:7579933 synonymous SNV . 0 2 hm5C_associated_SNPs_5670 8 0 1 0 1 Nucleus 1 0.500231643789625 1 0.999536712420749 hm5C_site_8553 DeepMRMD:1;iRNA_m5C:0.999536712420749 not specified not specified 8554 chr6 7581001 7581001 1 + C A rs28763966 7580985 + 7580965 7581005 41 GCAGAAAGCAAACAGTAGTGCGACGGAGACAATAAACAAAC GCAGAAAGCAAACAGTAGTGCGACGGAGACAATAAAAAAAC < 41bp 1 0.484939662325084 1 0.449101954698563 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7580985 chr6:7581001 nonsynonymous SNV 0.676 0 37 hm5C_associated_SNPs_5671 8 0 1 0 0 Nucleus 1 0.500231643948777 1 0.999536712102447 hm5C_site_8554 DeepMRMD:1;iRNA_m5C:0.999536712102447 not specified not specified 8555 chr6 7581089 7581089 1 + A G rs530647574 7581082 + 7581062 7581102 41 CAGGAGAGGACTGTGAAGGACCAGGATATCACGCGGTTCCA CAGGAGAGGACTGTGAAGGACCAGGATGTCACGCGGTTCCA < 41bp 1 0.368257353748041 1 0.275496274232864 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581082 chr6:7581089 nonsynonymous SNV 0.299 0 28 hm5C_associated_SNPs_5672 0 0 1 0 0 Nucleus 1 0.500231802080567 1 0.999536395838865 hm5C_site_8555 DeepMRMD:1;iRNA_m5C:0.999536395838865 8556 chr6 7581089 7581089 1 + A G rs530647574 7581095 + 7581075 7581115 41 TGAAGGACCAGGATATCACGCGGTTCCAGAACTCTCTGAAA TGAAGGACCAGGATGTCACGCGGTTCCAGAACTCTCTGAAA < 41bp 1 0.162520487479081 1 0.687551856040955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581095 chr6:7581089 nonsynonymous SNV 0.299 0 15 hm5C_associated_SNPs_5673 0 0 1 0 0 Nucleus 1 0.500231643921094 0.62489628791809 0.999536712157812 hm5C_site_8556 DeepMRMD:0.62489628791809;iRNA_m5C:0.999536712157812 8557 chr6 7581089 7581089 1 + A G rs530647574 7581100 + 7581080 7581120 41 GACCAGGATATCACGCGGTTCCAGAACTCTCTGAAAGAGCT GACCAGGATGTCACGCGGTTCCAGAACTCTCTGAAAGAGCT < 41bp 1 0.26422402822459 1 0.40388098359108 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581100 chr6:7581089 nonsynonymous SNV 0.299 0 10 hm5C_associated_SNPs_5674 0 0 1 0 0 Nucleus 1 0.500231728359264 1 0.999536543281471 hm5C_site_8557 DeepMRMD:1;iRNA_m5C:0.999536543281471 8558 chr6 13615767 13615767 1 + T C rs75029999 13615758 + 13615738 13615778 41 GAGGAAGACGAGGAAGGGGACGATGAGTTTGACGATGAGGC GAGGAAGACGAGGAAGGGGACGATGAGTTCGACGATGAGGC < 41bp 1 0.567849069438354 1 0.394457340240479 experiment 0.864301861123293 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13615758 chr6:13615767 synonymous SNV . 0 30 hm5C_associated_SNPs_5676 0 0 1 0 1 Ribosome 1 0.500231643902476 1 0.999536712195048 hm5C_site_8558 DeepMRMD:1;iRNA_m5C:0.999536712195048 8559 chr6 13616709 13616709 1 + T A rs141864975 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAAGAAAACTCCTACCAGACACTATTTTG < 41bp 1 0.331831852745083 1 0.258209943771362 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616709 synonymous SNV . 0 26 hm5C_associated_SNPs_5677 0 0 1 0 2 Ribosome 1 0.50023206677304 1 0.99953586645392 hm5C_site_8559 DeepMRMD:1;iRNA_m5C:0.99953586645392 8560 chr6 13616712 13616712 1 + A G rs3757262 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAAGAAAACTCCTTCCGGACACTATTTTG < 41bp 1 0.366788756957157 1 0.24390509724617 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616712 synonymous SNV . 0 29 hm5C_associated_SNPs_5678 0 0 1 0 2 Ribosome 1 0.500231644177387 1 0.999536711645227 hm5C_site_8560 DeepMRMD:1;iRNA_m5C:0.999536711645227 8561 chr6 14136309 14136309 1 + C T rs1050648 14136311 + 14136291 14136331 41 GTGCAGTCTGGGTGCTCGCCCACTTGTCCCACTATCTGGGT GTGCAGTCTGGGTGCTCGTCCACTTGTCCCACTATCTGGGT < 41bp 1 0.595739218186399 1 0.163758546113968 experiment 0.808521563627202 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD83 ENSG00000112149 UTR3 Human protein_coding chr6:14136311 chr6:14136309 . . 0 19 hm5C_associated_SNPs_5679 0 0 1 0 0 exosome 1 0.500571113607161 1 0.998857772785678 hm5C_site_8561 DeepMRMD:1;iRNA_m5C:0.998857772785678 8562 chr6 14136323 14136323 1 + T C rs540735890 14136311 + 14136291 14136331 41 GTGCAGTCTGGGTGCTCGCCCACTTGTCCCACTATCTGGGT GTGCAGTCTGGGTGCTCGCCCACTTGTCCCACCATCTGGGT < 41bp 1 0.605565977597897 1 0.0652211606502533 experiment 0.788868044804206 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD83 ENSG00000112149 UTR3 Human protein_coding chr6:14136311 chr6:14136323 . . 0 33 hm5C_associated_SNPs_5680 0 0 1 0 0 exosome 1 0.500231643921045 1 0.99953671215791 hm5C_site_8562 DeepMRMD:1;iRNA_m5C:0.99953671215791 8563 chr6 15487583 15487583 1 + A C rs35990127 15487577 + 15487557 15487597 41 GTCAACACGGGAGAAGGAACCTGTTCAAAAACACAAAAGCA GTCAACACGGGAGAAGGAACCTGTTCCAAAACACAAAAGCA < 41bp 1 0.1015445488863 1 0.329536080360413 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15487577 chr6:15487583 nonsynonymous SNV 0.989 0 27 hm5C_associated_SNPs_5681 0 0 1 0 1 Cytosol 1 0.500231643921197 1 0.999536712157607 hm5C_site_8563 DeepMRMD:1;iRNA_m5C:0.999536712157607 8564 chr6 15496742 15496742 1 + A G rs556092630 15496746 + 15496726 15496766 41 GGGCGGCAGCTGCGGGAGGGCCTGCAGCTGCGGGAGGGGCT GGGCGGCAGCTGCGGGGGGGCCTGCAGCTGCGGGAGGGGCT < 41bp 1 0.0659522195615021 1 0.269796878099442 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15496746 chr6:15496742 nonsynonymous SNV 0.990 2 17 hm5C_associated_SNPs_5682 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8564 DeepMRMD:1;iRNA_m5C:0.999536712157815 8565 chr6 18465833 18465833 1 + T A rs72834107 18465836 + 18465816 18465856 41 GGTGGTTGTGCCTCTGCTGGCTACTGGGTGTGCTGTCCCCA GGTGGTTGTGCCTCTGCAGGCTACTGGGTGTGCTGTCCCCA < 41bp 1 0.466639540178198 1 0.506832301616669 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RNF144B ENSG00000137393 UTR3 Human protein_coding chr6:18465836 chr6:18465833 . . 0 18 hm5C_associated_SNPs_5683 0 0 0 0 0 Nucleus 1 0.500231643921092 0.986335396766662 0.999536712157815 hm5C_site_8565 DeepMRMD:0.986335396766662;iRNA_m5C:0.999536712157815 8566 chr6 19839473 19839473 1 + C T rs9689909 19839459 + 19839439 19839479 41 AGGTGTGCGGCCGCCTGAGCCCGAGCCAGGAGCACTAGAGA AGGTGTGCGGCCGCCTGAGCCCGAGCCAGGAGCATTAGAGA < 41bp 1 0.617936039285445 1 0.703493297100067 experiment 0.764127921429111 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ID4 ENSG00000172201 UTR3 Human protein_coding chr6:19839459 chr6:19839473 . . 0 35 hm5C_associated_SNPs_5684 0 0 1 0 1 exosome 1 0.500231152515368 0.593013405799866 0.999537694969264 hm5C_site_8566 DeepMRMD:0.593013405799866;iRNA_m5C:0.999537694969264 8567 chr6 19839473 19839473 1 + C T rs9689909 19839464 + 19839444 19839484 41 TGCGGCCGCCTGAGCCCGAGCCAGGAGCACTAGAGAGGGAG TGCGGCCGCCTGAGCCCGAGCCAGGAGCATTAGAGAGGGAG < 41bp 1 0.556838643011981 1 0.707939863204956 experiment 0.886322713976038 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ID4 ENSG00000172201 UTR3 Human protein_coding chr6:19839464 chr6:19839473 . . 0 30 hm5C_associated_SNPs_5685 0 0 1 0 1 exosome 1 0.500231646423485 0.584120273590088 0.999536707153029 hm5C_site_8567 DeepMRMD:0.584120273590088;iRNA_m5C:0.999536707153029 8568 chr6 19839473 19839473 1 + C T rs9689909 19839471 + 19839451 19839491 41 GCCTGAGCCCGAGCCAGGAGCACTAGAGAGGGAGGGGGAAG GCCTGAGCCCGAGCCAGGAGCATTAGAGAGGGAGGGGGAAG < 41bp 1 0.618567969323527 1 0.136326014995575 experiment 0.762864061352946 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ID4 ENSG00000172201 UTR3 Human protein_coding chr6:19839471 chr6:19839473 . . 0 23 hm5C_associated_SNPs_5686 0 0 1 0 1 exosome 1 0.500231643921184 1 0.999536712157632 hm5C_site_8568 DeepMRMD:1;iRNA_m5C:0.999536712157632 8569 chr6 20490859 20490859 1 + G T rs182906095 20490854 + 20490834 20490874 41 AAACAAATTGTCTAAACGCACAGTTGCAGGCTCCCTTGGGA AAACAAATTGTCTAAACGCACAGTTTCAGGCTCCCTTGGGA < 41bp 1 0.137836662031302 1 0.0839495062828064 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control E2F3 ENSG00000112242 UTR3 Human protein_coding chr6:20490854 chr6:20490859 . . 0 26 hm5C_associated_SNPs_5687 0 0 1 0 0 Cytosol 1 0.500231643920629 1 0.999536712158742 hm5C_site_8569 DeepMRMD:1;iRNA_m5C:0.999536712158742 8570 chr6 20492146 20492146 1 + T C rs181590088 20492139 + 20492119 20492159 41 TGTGTCAGCTGCAAATCCTACCAGTTATGTCCAAGAATGGC TGTGTCAGCTGCAAATCCTACCAGTTACGTCCAAGAATGGC < 41bp 1 0.23611780080162 1 0.186059772968292 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control E2F3 ENSG00000112242 UTR3 Human protein_coding chr6:20492139 chr6:20492146 . . 0 28 hm5C_associated_SNPs_5688 0 0 0 0 0 Cytosol 1 0.500231643920021 1 0.999536712159957 hm5C_site_8570 DeepMRMD:1;iRNA_m5C:0.999536712159957 8571 chr6 20492146 20492146 1 + T C rs181590088 20492140 + 20492120 20492160 41 GTGTCAGCTGCAAATCCTACCAGTTATGTCCAAGAATGGCT GTGTCAGCTGCAAATCCTACCAGTTACGTCCAAGAATGGCT < 41bp 1 0.241855297659491 1 0.321161359548569 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control E2F3 ENSG00000112242 UTR3 Human protein_coding chr6:20492140 chr6:20492146 . . 0 27 hm5C_associated_SNPs_5689 0 0 0 0 0 Cytosol 1 0.500231643523069 1 0.999536712953863 hm5C_site_8571 DeepMRMD:1;iRNA_m5C:0.999536712953863 8572 chr6 20492407 20492407 1 + C G rs4134986 20492416 + 20492396 20492436 41 ACAAAAAACCACAAGAGCCCCAGCCAGTTTACTCCAGGTAG ACAAAAAACCAGAAGAGCCCCAGCCAGTTTACTCCAGGTAG < 41bp 1 0.361872103930296 1 0.118128299713135 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 UTR3 Human protein_coding chr6:20492416 chr6:20492407 . . 0 12 hm5C_associated_SNPs_5690 0 0 1 1 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8572 DeepMRMD:1;iRNA_m5C:0.999536712157815 8573 chr6 21198307 21198307 1 + A T rs553804984 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TCCAAGTTTTTTGTTGCACACAATCAATTCTATGAGCAGGT < 41bp 1 0.0451034779149847 1 0.0589894950389862 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198307 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_5691 0 0 0 0 2 Nucleus 1 0.499485099144468 1 1 hm5C_site_8573 DeepMRMD:1;iRNA_m5C:1 8574 chr6 21231911 21231911 1 + C T rs377601868 21231904 + 21231884 21231924 41 TCCTGACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGT TCCTGACCTCAAGTGATCCGCCCGCCTTGGCCTCCCAAAGT < 41bp 1 0.319150541684834 1 0.119145423173904 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231904 chr6:21231911 . . 0 28 hm5C_associated_SNPs_5692 0 0 0 0 0 Nucleus 1 0.500231643920796 1 0.999536712158408 hm5C_site_8574 DeepMRMD:1;iRNA_m5C:0.999536712158408 8575 chr6 21231911 21231911 1 + C T rs377601868 21231905 + 21231885 21231925 41 CCTGACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTG CCTGACCTCAAGTGATCCGCCCGCCTTGGCCTCCCAAAGTG < 41bp 1 0.35925422258552 1 0.171891272068024 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231905 chr6:21231911 . . 0 27 hm5C_associated_SNPs_5693 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_8575 DeepMRMD:1;iRNA_m5C:0.999536712157815 8576 chr6 21231911 21231911 1 + C T rs377601868 21231906 + 21231886 21231926 41 CTGACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGC CTGACCTCAAGTGATCCGCCCGCCTTGGCCTCCCAAAGTGC < 41bp 1 0.363031483819867 1 0.136661678552628 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231906 chr6:21231911 . . 0 26 hm5C_associated_SNPs_5694 0 0 0 0 0 Nucleus 1 0.500231640144506 1 0.999536719710989 hm5C_site_8576 DeepMRMD:1;iRNA_m5C:0.999536719710989 8577 chr6 21231911 21231911 1 + C T rs377601868 21231908 + 21231888 21231928 41 GACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTA GACCTCAAGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTA < 41bp 1 0.172055638850327 1 0.147180140018463 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231908 chr6:21231911 . . 0 24 hm5C_associated_SNPs_5695 0 0 0 0 0 Nucleus 1 0.500231622007522 1 0.999536755984956 hm5C_site_8577 DeepMRMD:1;iRNA_m5C:0.999536755984956 8578 chr6 21231911 21231911 1 + C T rs377601868 21231909 + 21231889 21231929 41 ACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTAG ACCTCAAGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTAG < 41bp 1 0.479947826479564 1 0.12486931681633 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231909 chr6:21231911 . . 0 23 hm5C_associated_SNPs_5696 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8578 DeepMRMD:1;iRNA_m5C:0.999536712157815 8579 chr6 21231911 21231911 1 + C T rs377601868 21231914 + 21231894 21231934 41 AAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTA AAGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTAGGATTA < 41bp 1 0.109261341416733 1 0.150477379560471 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231914 chr6:21231911 . . 0 18 hm5C_associated_SNPs_5697 0 0 0 0 0 Nucleus 1 0.500231643921496 1 0.999536712157009 hm5C_site_8579 DeepMRMD:1;iRNA_m5C:0.999536712157009 8580 chr6 21231911 21231911 1 + C T rs377601868 21231915 + 21231895 21231935 41 AGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTAC AGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTAGGATTAC < 41bp 1 0.385852828294099 1 0.124777555465698 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231915 chr6:21231911 . . 0 17 hm5C_associated_SNPs_5698 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8580 DeepMRMD:1;iRNA_m5C:0.999536712157815 8581 chr6 21231911 21231911 1 + C T rs377601868 21231917 + 21231897 21231937 41 TGATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAG TGATCCGCCCGCCTTGGCCTCCCAAAGTGCTAGGATTACAG < 41bp 1 0.319364023005841 1 0.113343417644501 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231917 chr6:21231911 . . 0 15 hm5C_associated_SNPs_5699 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8581 DeepMRMD:1;iRNA_m5C:0.999536712157815 8582 chr6 21231911 21231911 1 + C T rs377601868 21231918 + 21231898 21231938 41 GATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGG GATCCGCCCGCCTTGGCCTCCCAAAGTGCTAGGATTACAGG < 41bp 1 0.466172668299718 1 0.24409955739975 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231918 chr6:21231911 . . 0 14 hm5C_associated_SNPs_5700 0 0 0 0 0 Nucleus 1 0.500231643921091 1 0.999536712157817 hm5C_site_8582 DeepMRMD:1;iRNA_m5C:0.999536712157817 8583 chr6 21231911 21231911 1 + C T rs377601868 21231919 + 21231899 21231939 41 ATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGC ATCCGCCCGCCTTGGCCTCCCAAAGTGCTAGGATTACAGGC < 41bp 1 0.59365942993854 1 0.607732117176056 experiment 0.812681140122919 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231919 chr6:21231911 . . 0 13 hm5C_associated_SNPs_5701 0 0 0 0 0 Nucleus 1 0.500231643921092 0.784535765647888 0.999536712157815 hm5C_site_8583 DeepMRMD:0.784535765647888;iRNA_m5C:0.999536712157815 8584 chr6 21231929 21231929 1 + G T rs144909940 21231909 + 21231889 21231929 41 ACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTAG ACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTAT < 41bp 1 0.665412757712056 1 0.261604726314545 experiment 0.669174484575889 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231909 chr6:21231929 . . 0 41 hm5C_associated_SNPs_5702 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8584 DeepMRMD:1;iRNA_m5C:0.999536712157815 8585 chr6 21231929 21231929 1 + G T rs144909940 21231911 + 21231891 21231931 41 CTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGA CTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTATGA < 41bp 1 0.589272781915005 1 0.353440403938293 experiment 0.821454436169991 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231911 chr6:21231929 . . 0 39 hm5C_associated_SNPs_5703 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8585 DeepMRMD:1;iRNA_m5C:0.999536712157815 8586 chr6 21231929 21231929 1 + G T rs144909940 21231914 + 21231894 21231934 41 AAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTA AAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTATGATTA < 41bp 1 0.0696659493278148 1 0.164647549390793 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231914 chr6:21231929 . . 0 36 hm5C_associated_SNPs_5704 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8586 DeepMRMD:1;iRNA_m5C:0.999536712157815 8587 chr6 21231929 21231929 1 + G T rs144909940 21231915 + 21231895 21231935 41 AGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTAC AGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTATGATTAC < 41bp 1 0.371161293401492 1 0.225712358951569 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231915 chr6:21231929 . . 0 35 hm5C_associated_SNPs_5705 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_8587 DeepMRMD:1;iRNA_m5C:0.999536712157815 8588 chr6 21231929 21231929 1 + G T rs144909940 21231917 + 21231897 21231937 41 TGATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAG TGATCCGCCCGCCTCGGCCTCCCAAAGTGCTATGATTACAG < 41bp 1 0.354123030571851 1 0.23139151930809 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231917 chr6:21231929 . . 0 33 hm5C_associated_SNPs_5706 0 0 0 0 0 Nucleus 1 0.500231643921162 1 0.999536712157675 hm5C_site_8588 DeepMRMD:1;iRNA_m5C:0.999536712157675 8589 chr6 21231929 21231929 1 + G T rs144909940 21231918 + 21231898 21231938 41 GATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGG GATCCGCCCGCCTCGGCCTCCCAAAGTGCTATGATTACAGG < 41bp 1 0.488744823275104 1 0.64685195684433 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231918 chr6:21231929 . . 0 32 hm5C_associated_SNPs_5707 0 0 0 0 0 Nucleus 1 0.500231643921093 0.70629608631134 0.999536712157813 hm5C_site_8589 DeepMRMD:0.70629608631134;iRNA_m5C:0.999536712157813 8590 chr6 21231929 21231929 1 + G T rs144909940 21231919 + 21231899 21231939 41 ATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGC ATCCGCCCGCCTCGGCCTCCCAAAGTGCTATGATTACAGGC < 41bp 1 0.577863059490722 1 0.733094334602356 experiment 0.844273881018556 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 UTR3 Human protein_coding chr6:21231919 chr6:21231929 . . 0 31 hm5C_associated_SNPs_5708 0 0 0 0 0 Nucleus 1 0.500231643921696 0.533811330795288 0.999536712156608 hm5C_site_8590 DeepMRMD:0.533811330795288;iRNA_m5C:0.999536712156608 8591 chr6 21594637 21594637 1 + C T rs14256 21594646 + 21594626 21594666 41 GAGTTGAGGGGCCAGTTCGGCCGCCGCGCGCGTCTTCCCGT GAGTTGAGGGGTCAGTTCGGCCGCCGCGCGCGTCTTCCCGT < 41bp 1 0.432465304862188 1 0.520168602466583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOX4 ENSG00000124766 UTR5 Human protein_coding chr6:21594646 chr6:21594637 . . 0 12 hm5C_associated_SNPs_5709 0 0 1 0 0 Nucleus 1 0.500231649630606 0.959662795066834 0.999536700738788 hm5C_site_8591 DeepMRMD:0.959662795066834;iRNA_m5C:0.999536700738788 8592 chr6 21594637 21594637 1 + C T rs14256 21594649 + 21594629 21594669 41 TTGAGGGGCCAGTTCGGCCGCCGCGCGCGTCTTCCCGTTCG TTGAGGGGTCAGTTCGGCCGCCGCGCGCGTCTTCCCGTTCG < 41bp 1 0.599049657903591 1 0.225798785686493 experiment 0.801900684192818 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOX4 ENSG00000124766 UTR5 Human protein_coding chr6:21594649 chr6:21594637 . . 0 9 hm5C_associated_SNPs_5711 0 0 1 0 0 Nucleus 1 0.500231617946393 1 0.999536764107215 hm5C_site_8592 DeepMRMD:1;iRNA_m5C:0.999536764107215 8593 chr6 21594637 21594637 1 + C T rs14256 21594650 + 21594630 21594670 41 TGAGGGGCCAGTTCGGCCGCCGCGCGCGTCTTCCCGTTCGG TGAGGGGTCAGTTCGGCCGCCGCGCGCGTCTTCCCGTTCGG < 41bp 1 0.505386552778879 1 0.487275719642639 experiment 0.989226894442242 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOX4 ENSG00000124766 UTR5 Human protein_coding chr6:21594650 chr6:21594637 . . 0 8 hm5C_associated_SNPs_5712 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157817 hm5C_site_8593 DeepMRMD:1;iRNA_m5C:0.999536712157817 8594 chr6 24423254 24423254 1 + G A rs145494145 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTGGACGACAACTAGAAGCTCCATTGCCT < 41bp 1 0.352827652814925 1 0.0203087627887726 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423254 synonymous SNV . 0 23 hm5C_associated_SNPs_5713 0 0 1 0 2 Ribosome 1 0.500231643921706 1 0.999536712156588 hm5C_site_8594 DeepMRMD:1;iRNA_m5C:0.999536712156588 8595 chr6 25450202 25450202 1 + G A rs534828880 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGACAGCCAGACCATGGCTGAGCA < 41bp 1 0.473335982597773 1 0.482809901237488 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450202 nonsynonymous SNV 0.833 0 31 hm5C_associated_SNPs_5715 0 0 0 0 2 unknown 1 0.500231629530237 1 0.999536740939525 hm5C_site_8595 DeepMRMD:1;iRNA_m5C:0.999536740939525 8596 chr6 25551234 25551234 1 + G A rs540573662 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCACCAAAAAGATTTCTAT < 41bp 1 0.413945312402259 1 0.463811099529266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551234 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_5716 0 0 0 0 2 unknown 1 0.500232316525416 1 0.999535366949168 hm5C_site_8596 DeepMRMD:1;iRNA_m5C:0.999535366949168 8597 chr6 26045905 26045905 1 + G A rs3752417 26045888 + 26045868 26045908 41 AGGACTTCAAAACCGACCTGCGTTTCCAGAGCTCTGCGGTG AGGACTTCAAAACCGACCTGCGTTTCCAGAGCTCTGCAGTG < 41bp 1 0.0563029512928503 1 0.0837598145008087 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H3C ENSG00000196532 CDS Human other chr6:26045888 chr6:26045905 synonymous SNV . 0 38 hm5C_associated_SNPs_5717 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8597 DeepMRMD:1;iRNA_m5C:0.999536712157815 8598 chr6 26093180 26093180 1 + T C rs143175221 26093171 + 26093151 26093191 41 GCACCCAGGCCTGGATCAGCCCCTCATTGTGATCTGGGGTA GCACCCAGGCCTGGATCAGCCCCTCATTGCGATCTGGGGTA < 41bp 1 0.210760155118509 1 0.0476510524749756 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26093171 chr6:26093180 nonsynonymous SNV 0.003 0 30 hm5C_associated_SNPs_5718 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164392109 1 0.999536712157821 hm5C_site_8598 DeepMRMD:1;iRNA_m5C:0.999536712157821 8599 chr6 26156723 26156723 1 + G A rs146982083 26156707 + 26156687 26156727 41 GGCCCGCAAGTCTGCAGGTGCGGCCAAGCGCAAAGCGTCTG GGCCCGCAAGTCTGCAGGTGCGGCCAAGCGCAAAGCATCTG < 41bp 1 0.529803256917045 1 0.137588828802109 experiment 0.940393486165909 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26156707 chr6:26156723 synonymous SNV . 0 37 hm5C_associated_SNPs_5719 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8599 DeepMRMD:1;iRNA_m5C:0.999536712157815 8600 chr6 26286804 26286804 1 + G A rs574964275 26286785 + 26286765 26286805 41 GCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGG GCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATAG < 41bp 1 0.266384132568879 1 0.0190424621105194 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H4H;BTN3A2 ENSG00000158406;ENSG00000220875 intergenic Human other chr6:26286785 chr6:26286804 . . 0 40 hm5C_associated_SNPs_5720 0 0 1 0 0 unknown 1 0.500231643927009 1 0.999536712145983 hm5C_site_8600 DeepMRMD:1;iRNA_m5C:0.999536712145983 8601 chr6 26286804 26286804 1 + G A rs574964275 26286786 + 26286766 26286806 41 CAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGA CAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATAGA < 41bp 1 0.37848540107118 1 0.0418786406517029 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H4H;BTN3A2 ENSG00000158406;ENSG00000220875 intergenic Human other chr6:26286786 chr6:26286804 . . 0 39 hm5C_associated_SNPs_5721 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8601 DeepMRMD:1;iRNA_m5C:0.999536712157815 8602 chr6 26286804 26286804 1 + G A rs574964275 26286791 + 26286771 26286811 41 GAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAA GAAGCGTGCTGGGCCCATAACCCAGAGGTCGATAGATCGAA < 41bp 1 0.355473706253471 1 0.347440153360367 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H4H;BTN3A2 ENSG00000158406;ENSG00000220875 intergenic Human other chr6:26286791 chr6:26286804 . . 0 34 hm5C_associated_SNPs_5722 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_8602 DeepMRMD:1;iRNA_m5C:0.999536712157815 8603 chr6 26286804 26286804 1 + G A rs574964275 26286800 + 26286780 26286820 41 TGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTC TGGGCCCATAACCCAGAGGTCGATAGATCGAAACCATCCTC < 41bp 1 0.591761344058459 1 0.313009083271027 experiment 0.816477311883081 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|27356879;GSE66010;miCLIP;HEK293;Control HIST1H4H;BTN3A2 ENSG00000158406;ENSG00000220875 intergenic Human other chr6:26286800 chr6:26286804 . . 0 25 hm5C_associated_SNPs_5724 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8603 DeepMRMD:1;iRNA_m5C:0.999536712157815 8604 chr6 26286804 26286804 1 + G A rs574964275 26286808 + 26286788 26286828 41 TAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTAGGT TAACCCAGAGGTCGATAGATCGAAACCATCCTCTGCTAGGT < 41bp 1 0.658587113200248 1 0.710045158863068 experiment 0.682825773599503 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H4H;BTN3A2 ENSG00000158406;ENSG00000220875 intergenic Human other chr6:26286808 chr6:26286804 . . 0 17 hm5C_associated_SNPs_5725 0 0 1 0 0 unknown 1 0.500231643028901 0.579909682273864 0.999536713942198 hm5C_site_8604 DeepMRMD:0.579909682273864;iRNA_m5C:0.999536713942198 8605 chr6 26286804 26286804 1 + G A rs574964275 26286813 + 26286793 26286833 41 CAGAGGTCGATGGATCGAAACCATCCTCTGCTAGGTCCTTT CAGAGGTCGATAGATCGAAACCATCCTCTGCTAGGTCCTTT < 41bp 1 0.0309658073540797 1 0.0699940323829651 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control HIST1H4H;BTN3A2 ENSG00000158406;ENSG00000220875 intergenic Human other chr6:26286813 chr6:26286804 . . 0 12 hm5C_associated_SNPs_5726 0 0 1 0 0 unknown 1 0.50023164389824 1 0.99953671220352 hm5C_site_8605 DeepMRMD:1;iRNA_m5C:0.99953671220352 8606 chr6 26286804 26286804 1 + G A rs574964275 26286817 + 26286797 26286837 41 GGTCGATGGATCGAAACCATCCTCTGCTAGGTCCTTTTTTT GGTCGATAGATCGAAACCATCCTCTGCTAGGTCCTTTTTTT < 41bp 1 0.0720456897344052 1 0.0253023505210876 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000158406;ENSG00000220875 intergenic Human other chr6:26286817 chr6:26286804 . . 0 8 hm5C_associated_SNPs_5727 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8606 DeepMRMD:1;iRNA_m5C:0.999536712157815 8607 chr6 26286804 26286804 1 + G A rs574964275 26286818 + 26286798 26286838 41 GTCGATGGATCGAAACCATCCTCTGCTAGGTCCTTTTTTTT GTCGATAGATCGAAACCATCCTCTGCTAGGTCCTTTTTTTT < 41bp 1 0.263663226073961 1 0.0349572598934174 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000158406;ENSG00000220875 intergenic Human other chr6:26286818 chr6:26286804 . . 0 7 hm5C_associated_SNPs_5728 0 0 1 0 0 unknown 1 0.500231642877556 1 0.999536714244888 hm5C_site_8607 DeepMRMD:1;iRNA_m5C:0.999536714244888 8608 chr6 26286816 26286816 1 + T C rs545756132 26286800 + 26286780 26286820 41 TGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTC TGGGCCCATAACCCAGAGGTCGATGGATCGAAACCACCCTC < 41bp 1 0.523686340265106 1 0.473832100629807 experiment 0.952627319469789 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|27356879;GSE66010;miCLIP;HEK293;Control HIST1H4H;BTN3A2 ENSG00000158406;ENSG00000220875 intergenic Human other chr6:26286800 chr6:26286816 . . 0 37 hm5C_associated_SNPs_5729 0 0 1 0 0 unknown 1 0.500231643919128 1 0.999536712161744 hm5C_site_8608 DeepMRMD:1;iRNA_m5C:0.999536712161744 8609 chr6 26286816 26286816 1 + T C rs545756132 26286808 + 26286788 26286828 41 TAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTAGGT TAACCCAGAGGTCGATGGATCGAAACCACCCTCTGCTAGGT < 41bp 1 0.629576566807233 1 0.639345049858093 experiment 0.740846866385534 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H4H;BTN3A2 ENSG00000158406;ENSG00000220875 intergenic Human other chr6:26286808 chr6:26286816 . . 0 29 hm5C_associated_SNPs_5730 0 0 1 0 0 unknown 1 0.500231643910904 0.721309900283814 0.999536712178193 hm5C_site_8609 DeepMRMD:0.721309900283814;iRNA_m5C:0.999536712178193 8610 chr6 26286816 26286816 1 + T C rs545756132 26286813 + 26286793 26286833 41 CAGAGGTCGATGGATCGAAACCATCCTCTGCTAGGTCCTTT CAGAGGTCGATGGATCGAAACCACCCTCTGCTAGGTCCTTT < 41bp 1 0.0863236473116781 1 0.0449624061584473 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control HIST1H4H;BTN3A2 ENSG00000158406;ENSG00000220875 intergenic Human other chr6:26286813 chr6:26286816 . . 0 24 hm5C_associated_SNPs_5731 0 0 1 0 0 unknown 1 0.500231643915039 1 0.999536712169923 hm5C_site_8610 DeepMRMD:1;iRNA_m5C:0.999536712169923 8611 chr6 26286816 26286816 1 + T C rs545756132 26286817 + 26286797 26286837 41 GGTCGATGGATCGAAACCATCCTCTGCTAGGTCCTTTTTTT GGTCGATGGATCGAAACCACCCTCTGCTAGGTCCTTTTTTT < 41bp 1 0.067060267827528 1 0.0198504328727722 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000158406;ENSG00000220875 intergenic Human other chr6:26286817 chr6:26286816 . . 0 20 hm5C_associated_SNPs_5732 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8611 DeepMRMD:1;iRNA_m5C:0.999536712157815 8612 chr6 26286816 26286816 1 + T C rs545756132 26286818 + 26286798 26286838 41 GTCGATGGATCGAAACCATCCTCTGCTAGGTCCTTTTTTTT GTCGATGGATCGAAACCACCCTCTGCTAGGTCCTTTTTTTT < 41bp 1 0.242912626324465 1 0.0244231820106506 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000158406;ENSG00000220875 intergenic Human other chr6:26286818 chr6:26286816 . . 0 19 hm5C_associated_SNPs_5733 0 0 1 0 0 unknown 1 0.500231643921103 1 0.999536712157794 hm5C_site_8612 DeepMRMD:1;iRNA_m5C:0.999536712157794 8613 chr6 26323074 26323074 1 + T C rs144639891 26323085 + 26323065 26323105 41 TAAGGCGTCTGACTTCGGATCAGAAGATTGAGGGTTCGAAT TAAGGCGTCCGACTTCGGATCAGAAGATTGAGGGTTCGAAT < 41bp 1 0.571856854597412 1 0.358286082744598 experiment 0.856286290805175 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|27356879;GSE66010;miCLIP;HEK293;Control HIST1H4H;BTN3A2 ENSG00000220875 upstream Human processed_pseudogene chr6:26323085 chr6:26323074 . . 0 10 hm5C_associated_SNPs_5734 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_8613 DeepMRMD:1;iRNA_m5C:0.999536712157816 8614 chr6 26323075 26323075 1 + G A rs567314006 26323085 + 26323065 26323105 41 TAAGGCGTCTGACTTCGGATCAGAAGATTGAGGGTTCGAAT TAAGGCGTCTAACTTCGGATCAGAAGATTGAGGGTTCGAAT < 41bp 1 0.56147787522067 1 0.346119731664658 experiment 0.87704424955866 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|27356879;GSE66010;miCLIP;HEK293;Control HIST1H4H;BTN3A2 ENSG00000220875 upstream Human processed_pseudogene chr6:26323085 chr6:26323075 . . 0 11 hm5C_associated_SNPs_5735 0 0 1 0 0 unknown 1 0.500231644131994 1 0.999536711736012 hm5C_site_8614 DeepMRMD:1;iRNA_m5C:0.999536711736012 8615 chr6 26327867 26327867 1 + T A rs189870640 26327870 + 26327850 26327890 41 AGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGC AGAAATCCATTGGGGTCACCCCGCGCAGGTTCGAATCCTGC < 41bp 1 0.332132567299184 1 0.473697900772095 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26327870 chr6:26327867 . . 0 18 hm5C_associated_SNPs_5736 0 0 1 0 0 unknown 1 0.500231643921073 1 0.999536712157853 hm5C_site_8615 DeepMRMD:1;iRNA_m5C:0.999536712157853 8616 chr6 26327867 26327867 1 + T A rs189870640 26327881 + 26327861 26327901 41 GGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACGGCA GGGGTCACCCCGCGCAGGTTCGAATCCTGCCGACTACGGCA < 41bp 1 0.317434377500594 1 0.0777748823165894 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26327881 chr6:26327867 . . 0 7 hm5C_associated_SNPs_5738 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8616 DeepMRMD:1;iRNA_m5C:0.999536712157815 8617 chr6 26328399 26328399 1 + C G rs183582388 26328407 + 26328387 26328427 41 TAACGCGTCTGACTACGGATCAGAAGATTCCAGGTTCGACT TAACGCGTCTGAGTACGGATCAGAAGATTCCAGGTTCGACT < 41bp 1 0.638599648950462 1 0.301986694335938 experiment 0.722800702099077 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328407 chr6:26328399 . . 0 13 hm5C_associated_SNPs_5739 0 0 1 0 0 unknown 1 0.500231629728867 1 0.999536740542266 hm5C_site_8617 DeepMRMD:1;iRNA_m5C:0.999536740542266 Psychosis (atypical) 8618 chr6 26328399 26328399 1 + C G rs183582388 26328416 + 26328396 26328436 41 TGACTACGGATCAGAAGATTCCAGGTTCGACTCCTGGCTGG TGAGTACGGATCAGAAGATTCCAGGTTCGACTCCTGGCTGG < 41bp 1 0.677249466102756 1 0.70283031463623 experiment 0.645501067794488 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328416 chr6:26328399 . . 0 4 hm5C_associated_SNPs_5740 0 0 1 0 0 unknown 1 0.500231643917494 0.59433937072754 0.999536712165011 hm5C_site_8618 DeepMRMD:0.59433937072754;iRNA_m5C:0.999536712165011 Psychosis (atypical) 8619 chr6 26328399 26328399 1 + C G rs183582388 26328417 + 26328397 26328437 41 GACTACGGATCAGAAGATTCCAGGTTCGACTCCTGGCTGGC GAGTACGGATCAGAAGATTCCAGGTTCGACTCCTGGCTGGC < 41bp 1 0.649514651372237 1 0.769293904304504 experiment 0.700970697255525 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328417 chr6:26328399 . . 0 3 hm5C_associated_SNPs_5741 0 0 1 0 0 unknown 1 0.500205440451559 0.461412191390992 0.999589119096882 hm5C_site_8619 DeepMRMD:0.461412191390992;iRNA_m5C:0.999589119096882 8620 chr6 26328408 26328408 1 + A G rs188520062 26328407 + 26328387 26328427 41 TAACGCGTCTGACTACGGATCAGAAGATTCCAGGTTCGACT TAACGCGTCTGACTACGGATCGGAAGATTCCAGGTTCGACT < 41bp 1 0.656879023214126 1 0.444835484027863 experiment 0.686241953571748 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328407 chr6:26328408 . . 0 22 hm5C_associated_SNPs_5742 0 0 1 0 0 unknown 1 0.500231643934041 1 0.999536712131918 hm5C_site_8620 DeepMRMD:1;iRNA_m5C:0.999536712131918 8621 chr6 26328408 26328408 1 + A G rs188520062 26328423 + 26328403 26328443 41 GGATCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTC GGATCGGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTC < 41bp 1 0.254752035007301 1 0.132415175437927 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328423 chr6:26328408 . . 0 6 hm5C_associated_SNPs_5745 0 0 1 0 0 unknown 1 0.500230129269244 1 0.999539741461511 hm5C_site_8621 DeepMRMD:1;iRNA_m5C:0.999539741461511 8622 chr6 26328408 26328408 1 + A G rs188520062 26328426 + 26328406 26328446 41 TCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGAC TCGGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGAC < 41bp 1 0.269159423038487 1 0.246132135391235 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328426 chr6:26328408 . . 0 3 hm5C_associated_SNPs_5746 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_8622 DeepMRMD:1;iRNA_m5C:0.999536712157816 8623 chr6 26328408 26328408 1 + A G rs188520062 26328428 + 26328408 26328448 41 AGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGACTT GGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGACTT < 41bp 1 0.270690743677288 1 0.184557527303696 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328428 chr6:26328408 . . 0 1 hm5C_associated_SNPs_5747 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8623 DeepMRMD:1;iRNA_m5C:0.999536712157815 8624 chr6 26328411 26328411 1 + A G rs369244033 26328407 + 26328387 26328427 41 TAACGCGTCTGACTACGGATCAGAAGATTCCAGGTTCGACT TAACGCGTCTGACTACGGATCAGAGGATTCCAGGTTCGACT < 41bp 1 0.510566459969264 1 0.613681614398956 experiment 0.978867080061471 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328407 chr6:26328411 . . 0 25 hm5C_associated_SNPs_5748 0 0 1 0 0 unknown 1 0.500231643752363 0.772636771202088 0.999536712495274 hm5C_site_8624 DeepMRMD:0.772636771202088;iRNA_m5C:0.999536712495274 8625 chr6 26328411 26328411 1 + A G rs369244033 26328417 + 26328397 26328437 41 GACTACGGATCAGAAGATTCCAGGTTCGACTCCTGGCTGGC GACTACGGATCAGAGGATTCCAGGTTCGACTCCTGGCTGGC < 41bp 1 0.659731115144683 1 0.819060206413269 experiment 0.680537769710634 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328417 chr6:26328411 . . 0 15 hm5C_associated_SNPs_5750 0 0 1 0 0 unknown 1 0.500233785331282 0.361879587173462 0.999532429337436 hm5C_site_8625 DeepMRMD:0.361879587173462;iRNA_m5C:0.999532429337436 8626 chr6 26328411 26328411 1 + A G rs369244033 26328423 + 26328403 26328443 41 GGATCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTC GGATCAGAGGATTCCAGGTTCGACTCCTGGCTGGCTCGTTC < 41bp 1 0.291989647945044 1 0.310588985681534 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328423 chr6:26328411 . . 0 9 hm5C_associated_SNPs_5751 0 0 1 0 0 unknown 1 0.500231503041257 1 0.999536993917485 hm5C_site_8626 DeepMRMD:1;iRNA_m5C:0.999536993917485 8627 chr6 26328411 26328411 1 + A G rs369244033 26328426 + 26328406 26328446 41 TCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGAC TCAGAGGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGAC < 41bp 1 0.280475343617593 1 0.238478749990463 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328426 chr6:26328411 . . 0 6 hm5C_associated_SNPs_5752 0 0 1 0 0 unknown 1 0.500231643921057 1 0.999536712157886 hm5C_site_8627 DeepMRMD:1;iRNA_m5C:0.999536712157886 8628 chr6 26328411 26328411 1 + A G rs369244033 26328428 + 26328408 26328448 41 AGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGACTT AGAGGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGACTT < 41bp 1 0.267398793894897 1 0.276424378156662 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328428 chr6:26328411 . . 0 4 hm5C_associated_SNPs_5753 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8628 DeepMRMD:1;iRNA_m5C:0.999536712157815 8629 chr6 26328411 26328411 1 + A G rs369244033 26328429 + 26328409 26328449 41 GAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGACTTT GAGGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGACTTT < 41bp 1 0.342760645619373 1 0.0570217072963715 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328429 chr6:26328411 . . 0 3 hm5C_associated_SNPs_5754 0 0 1 0 0 unknown 1 0.500230826679801 1 0.999538346640398 hm5C_site_8629 DeepMRMD:1;iRNA_m5C:0.999538346640398 8630 chr6 26328417 26328417 1 + C T rs6939540 26328407 + 26328387 26328427 41 TAACGCGTCTGACTACGGATCAGAAGATTCCAGGTTCGACT TAACGCGTCTGACTACGGATCAGAAGATTCTAGGTTCGACT < 41bp 1 0.535200041653791 1 0.619839370250702 experiment 0.929599916692418 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328407 chr6:26328417 . . 0 31 hm5C_associated_SNPs_5755 0 0 1 0 0 unknown 1 0.500231642120458 0.760321259498596 0.999536715759085 hm5C_site_8630 DeepMRMD:0.760321259498596;iRNA_m5C:0.999536715759085 8631 chr6 26328417 26328417 1 + C T rs6939540 26328423 + 26328403 26328443 41 GGATCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTC GGATCAGAAGATTCTAGGTTCGACTCCTGGCTGGCTCGTTC < 41bp 1 0.233021440671224 1 0.0975182354450226 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328423 chr6:26328417 . . 0 15 hm5C_associated_SNPs_5756 0 0 1 0 0 unknown 1 0.500231368249645 1 0.99953726350071 hm5C_site_8631 DeepMRMD:1;iRNA_m5C:0.99953726350071 8632 chr6 26328417 26328417 1 + C T rs6939540 26328426 + 26328406 26328446 41 TCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGAC TCAGAAGATTCTAGGTTCGACTCCTGGCTGGCTCGTTCGAC < 41bp 1 0.233070646032225 1 0.115635246038437 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328426 chr6:26328417 . . 0 12 hm5C_associated_SNPs_5757 0 0 1 0 0 unknown 1 0.500231645943615 1 0.99953670811277 hm5C_site_8632 DeepMRMD:1;iRNA_m5C:0.99953670811277 8633 chr6 26328417 26328417 1 + C T rs6939540 26328428 + 26328408 26328448 41 AGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGACTT AGAAGATTCTAGGTTCGACTCCTGGCTGGCTCGTTCGACTT < 41bp 1 0.262336444002671 1 0.0943317711353302 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328428 chr6:26328417 . . 0 10 hm5C_associated_SNPs_5758 0 0 1 0 0 unknown 1 0.500231621813716 1 0.999536756372569 hm5C_site_8633 DeepMRMD:1;iRNA_m5C:0.999536756372569 8634 chr6 26328417 26328417 1 + C T rs6939540 26328429 + 26328409 26328449 41 GAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGACTTT GAAGATTCTAGGTTCGACTCCTGGCTGGCTCGTTCGACTTT < 41bp 1 0.335345733363628 1 0.0307511389255524 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328429 chr6:26328417 . . 0 9 hm5C_associated_SNPs_5759 0 0 1 0 0 unknown 1 0.500224492135236 1 0.999551015729528 hm5C_site_8634 DeepMRMD:1;iRNA_m5C:0.999551015729528 8635 chr6 26328417 26328417 1 + C T rs6939540 26328433 + 26328413 26328453 41 ATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGACTTTAGTG ATTCTAGGTTCGACTCCTGGCTGGCTCGTTCGACTTTAGTG < 41bp 1 0.371907853960166 1 0.0777685046195984 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328433 chr6:26328417 . . 0 5 hm5C_associated_SNPs_5760 0 0 1 0 0 unknown 1 0.500231643921049 1 0.999536712157902 hm5C_site_8635 DeepMRMD:1;iRNA_m5C:0.999536712157902 8636 chr6 26328417 26328417 1 + C T rs6939540 26328437 + 26328417 26328457 41 CAGGTTCGACTCCTGGCTGGCTCGTTCGACTTTAGTGGAAA TAGGTTCGACTCCTGGCTGGCTCGTTCGACTTTAGTGGAAA < 41bp 1 0.235499385233657 1 0.240140795707703 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328437 chr6:26328417 . . 0 1 hm5C_associated_SNPs_5761 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8636 DeepMRMD:1;iRNA_m5C:0.999536712157815 8637 chr6 26328426 26328426 1 + C G rs146762816 26328407 + 26328387 26328427 41 TAACGCGTCTGACTACGGATCAGAAGATTCCAGGTTCGACT TAACGCGTCTGACTACGGATCAGAAGATTCCAGGTTCGAGT < 41bp 1 0.594058602817877 1 0.39243358373642 experiment 0.811882794364246 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328407 chr6:26328426 . . 0 40 hm5C_associated_SNPs_5762 0 0 1 0 0 unknown 1 0.500232104599315 1 0.999535790801371 hm5C_site_8637 DeepMRMD:1;iRNA_m5C:0.999535790801371 8638 chr6 26328426 26328426 1 + C G rs146762816 26328416 + 26328396 26328436 41 TGACTACGGATCAGAAGATTCCAGGTTCGACTCCTGGCTGG TGACTACGGATCAGAAGATTCCAGGTTCGAGTCCTGGCTGG < 41bp 1 0.662466855754753 1 0.861488819122314 experiment 0.675066288490494 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328416 chr6:26328426 . . 0 31 hm5C_associated_SNPs_5763 0 0 1 0 0 unknown 1 0.500231643920788 0.277022361755372 0.999536712158424 hm5C_site_8638 DeepMRMD:0.277022361755372;iRNA_m5C:0.999536712158424 8639 chr6 26328426 26328426 1 + C G rs146762816 26328417 + 26328397 26328437 41 GACTACGGATCAGAAGATTCCAGGTTCGACTCCTGGCTGGC GACTACGGATCAGAAGATTCCAGGTTCGAGTCCTGGCTGGC < 41bp 1 0.641558803317228 1 0.713318109512329 experiment 0.716882393365544 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328417 chr6:26328426 . . 0 30 hm5C_associated_SNPs_5764 0 0 1 0 0 unknown 1 0.500197772215957 0.573363780975342 0.999604455568085 hm5C_site_8639 DeepMRMD:0.573363780975342;iRNA_m5C:0.999604455568085 8640 chr6 26328426 26328426 1 + C G rs146762816 26328423 + 26328403 26328443 41 GGATCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTC GGATCAGAAGATTCCAGGTTCGAGTCCTGGCTGGCTCGTTC < 41bp 1 0.423881523956247 1 0.314343184232712 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328423 chr6:26328426 . . 0 24 hm5C_associated_SNPs_5765 0 0 1 0 0 unknown 1 0.500231579091249 1 0.999536841817503 hm5C_site_8640 DeepMRMD:1;iRNA_m5C:0.999536841817503 8641 chr6 26328426 26328426 1 + C G rs146762816 26328428 + 26328408 26328448 41 AGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGACTT AGAAGATTCCAGGTTCGAGTCCTGGCTGGCTCGTTCGACTT < 41bp 1 0.225319065166438 1 0.121646344661713 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328428 chr6:26328426 . . 0 19 hm5C_associated_SNPs_5766 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8641 DeepMRMD:1;iRNA_m5C:0.999536712157815 8642 chr6 26328426 26328426 1 + C G rs146762816 26328429 + 26328409 26328449 41 GAAGATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGACTTT GAAGATTCCAGGTTCGAGTCCTGGCTGGCTCGTTCGACTTT < 41bp 1 0.348206446634466 1 0.0438592135906219 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328429 chr6:26328426 . . 0 18 hm5C_associated_SNPs_5767 0 0 1 0 0 unknown 1 0.500220419927245 1 0.999559160145509 hm5C_site_8642 DeepMRMD:1;iRNA_m5C:0.999559160145509 8643 chr6 26328426 26328426 1 + C G rs146762816 26328433 + 26328413 26328453 41 ATTCCAGGTTCGACTCCTGGCTGGCTCGTTCGACTTTAGTG ATTCCAGGTTCGAGTCCTGGCTGGCTCGTTCGACTTTAGTG < 41bp 1 0.441773457482235 1 0.0938341617584229 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328433 chr6:26328426 . . 0 14 hm5C_associated_SNPs_5768 0 0 1 0 0 unknown 1 0.500231643921068 1 0.999536712157864 hm5C_site_8643 DeepMRMD:1;iRNA_m5C:0.999536712157864 8644 chr6 26328426 26328426 1 + C G rs146762816 26328437 + 26328417 26328457 41 CAGGTTCGACTCCTGGCTGGCTCGTTCGACTTTAGTGGAAA CAGGTTCGAGTCCTGGCTGGCTCGTTCGACTTTAGTGGAAA < 41bp 1 0.262613255428533 1 0.323983073234558 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328437 chr6:26328426 . . 0 10 hm5C_associated_SNPs_5769 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8644 DeepMRMD:1;iRNA_m5C:0.999536712157815 8645 chr6 26328426 26328426 1 + C G rs146762816 26328439 + 26328419 26328459 41 GGTTCGACTCCTGGCTGGCTCGTTCGACTTTAGTGGAAACT GGTTCGAGTCCTGGCTGGCTCGTTCGACTTTAGTGGAAACT < 41bp 1 0.0630046491805495 1 0.441581398248672 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HIST1H4H;BTN3A2 ENSG00000220875;ENSG00000252399 intergenic Human other chr6:26328439 chr6:26328426 . . 0 8 hm5C_associated_SNPs_5770 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8645 DeepMRMD:1;iRNA_m5C:0.999536712157815 8646 chr6 26467987 26467987 1 + C G rs114905060 26467975 + 26467955 26467995 41 TTCTTCTCAAACTGAGAGAACTGCTTCTGTCTCTGGAGAGA TTCTTCTCAAACTGAGAGAACTGCTTCTGTCTGTGGAGAGA < 41bp 1 0.182832489812364 1 0.0552840530872345 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BTN2A1 ENSG00000112763 UTR3 Human protein_coding chr6:26467975 chr6:26467987 . . 0 33 hm5C_associated_SNPs_5771 0 0 0 0 1 Endoplasmic reticulum 1 0.500293909501891 1 0.999412180996218 hm5C_site_8646 DeepMRMD:1;iRNA_m5C:0.999412180996218 8647 chr6 26521484 26521484 1 + C A rs189360088 26521466 + 26521446 26521486 41 CCGAGCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCCCC CCGAGCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCACC < 41bp 1 0.0550646496654039 1 0.0629796981811523 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521466 chr6:26521484 . . 0 39 hm5C_associated_SNPs_5772 0 0 1 0 0 unknown 1 0.500231649259501 1 0.999536701480999 hm5C_site_8647 DeepMRMD:1;iRNA_m5C:0.999536701480999 8648 chr6 26521484 26521484 1 + C A rs189360088 26521470 + 26521450 26521490 41 GCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGA GCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCACCTGGA < 41bp 1 0.680169935780386 1 0.882558465003967 experiment 0.639660128439229 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521470 chr6:26521484 . . 0 35 hm5C_associated_SNPs_5773 0 0 1 0 0 unknown 1 0.50082776851435 0.234883069992066 0.998344462971299 hm5C_site_8648 DeepMRMD:0.234883069992066;iRNA_m5C:0.998344462971299 8649 chr6 26521484 26521484 1 + C A rs189360088 26521475 + 26521455 26521495 41 CTAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGT CTAAGGCGCTGCGTTCAGGTCGCAGTCTCACCTGGAGGCGT < 41bp 1 0.688188339723224 1 0.137417197227478 experiment 0.623623320553551 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521475 chr6:26521484 . . 0 30 hm5C_associated_SNPs_5774 0 0 1 0 0 unknown 1 0.500231643753091 1 0.999536712493818 hm5C_site_8649 DeepMRMD:1;iRNA_m5C:0.999536712493818 8650 chr6 26521484 26521484 1 + C A rs189360088 26521477 + 26521457 26521497 41 AAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGG AAGGCGCTGCGTTCAGGTCGCAGTCTCACCTGGAGGCGTGG < 41bp 1 0.233687096350497 1 0.146806240081787 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521477 chr6:26521484 . . 0 28 hm5C_associated_SNPs_5775 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8650 DeepMRMD:1;iRNA_m5C:0.999536712157815 8651 chr6 26521484 26521484 1 + C A rs189360088 26521481 + 26521461 26521501 41 CGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTC CGCTGCGTTCAGGTCGCAGTCTCACCTGGAGGCGTGGGTTC < 41bp 1 0.526484886751722 1 0.469691693782806 experiment 0.947030226496557 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521481 chr6:26521484 . . 0 24 hm5C_associated_SNPs_5776 0 0 1 0 0 unknown 1 0.500231643921912 1 0.999536712156175 hm5C_site_8651 DeepMRMD:1;iRNA_m5C:0.999536712156175 8652 chr6 26521484 26521484 1 + C A rs189360088 26521485 + 26521465 26521505 41 GCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAAT GCGTTCAGGTCGCAGTCTCACCTGGAGGCGTGGGTTCGAAT < 41bp 1 0.333107558773808 1 0.110544770956039 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521485 chr6:26521484 . . 0 20 hm5C_associated_SNPs_5777 0 0 1 0 0 unknown 1 0.500231644042268 1 0.999536711915464 hm5C_site_8652 DeepMRMD:1;iRNA_m5C:0.999536711915464 8653 chr6 26521484 26521484 1 + C A rs189360088 26521501 + 26521481 26521521 41 CTCCCCTGGAGGCGTGGGTTCGAATCCCACTCCTGACAGTT CTCACCTGGAGGCGTGGGTTCGAATCCCACTCCTGACAGTT < 41bp 1 0.211457539944373 1 0.156642764806747 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521501 chr6:26521484 . . 0 4 hm5C_associated_SNPs_5779 0 0 1 0 0 unknown 1 0.500231727450235 1 0.999536545099531 hm5C_site_8653 DeepMRMD:1;iRNA_m5C:0.999536545099531 8654 chr6 26521488 26521488 1 + G A rs192544521 26521475 + 26521455 26521495 41 CTAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGT CTAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTAGAGGCGT < 41bp 1 0.669276053494288 1 0.217855453491211 experiment 0.661447893011424 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521475 chr6:26521488 . . 0 34 hm5C_associated_SNPs_5781 0 0 1 0 0 unknown 1 0.500231643921083 1 0.999536712157834 hm5C_site_8654 DeepMRMD:1;iRNA_m5C:0.999536712157834 8655 chr6 26521488 26521488 1 + G A rs192544521 26521477 + 26521457 26521497 41 AAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGG AAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTAGAGGCGTGG < 41bp 1 0.22774141734159 1 0.177038013935089 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521477 chr6:26521488 . . 0 32 hm5C_associated_SNPs_5782 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8655 DeepMRMD:1;iRNA_m5C:0.999536712157815 8656 chr6 26521488 26521488 1 + G A rs192544521 26521481 + 26521461 26521501 41 CGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTC CGCTGCGTTCAGGTCGCAGTCTCCCCTAGAGGCGTGGGTTC < 41bp 1 0.573650836869717 1 0.711203455924988 experiment 0.852698326260567 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521481 chr6:26521488 . . 0 28 hm5C_associated_SNPs_5783 0 0 1 0 0 unknown 1 0.50023234710482 0.577593088150024 0.99953530579036 hm5C_site_8656 DeepMRMD:0.577593088150024;iRNA_m5C:0.99953530579036 8657 chr6 26521488 26521488 1 + G A rs192544521 26521484 + 26521464 26521504 41 TGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAA TGCGTTCAGGTCGCAGTCTCCCCTAGAGGCGTGGGTTCGAA < 41bp 1 0.42795135042375 1 0.332820177078247 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521484 chr6:26521488 . . 0 25 hm5C_associated_SNPs_5784 0 0 1 0 0 unknown 1 0.500231643918682 1 0.999536712162636 hm5C_site_8657 DeepMRMD:1;iRNA_m5C:0.999536712162636 8658 chr6 26521488 26521488 1 + G A rs192544521 26521485 + 26521465 26521505 41 GCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAAT GCGTTCAGGTCGCAGTCTCCCCTAGAGGCGTGGGTTCGAAT < 41bp 1 0.150008941251867 1 0.199739456176758 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521485 chr6:26521488 . . 0 24 hm5C_associated_SNPs_5785 0 0 1 0 0 unknown 1 0.500234522945848 1 0.999530954108304 hm5C_site_8658 DeepMRMD:1;iRNA_m5C:0.999530954108304 8659 chr6 26521488 26521488 1 + G A rs192544521 26521501 + 26521481 26521521 41 CTCCCCTGGAGGCGTGGGTTCGAATCCCACTCCTGACAGTT CTCCCCTAGAGGCGTGGGTTCGAATCCCACTCCTGACAGTT < 41bp 1 0.197960691411463 1 0.104737162590027 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521501 chr6:26521488 . . 0 8 hm5C_associated_SNPs_5787 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_8659 DeepMRMD:1;iRNA_m5C:0.999536712157815 8660 chr6 26521488 26521488 1 + G A rs192544521 26521506 + 26521486 26521526 41 CTGGAGGCGTGGGTTCGAATCCCACTCCTGACAGTTCGTAC CTAGAGGCGTGGGTTCGAATCCCACTCCTGACAGTTCGTAC < 41bp 1 0.170230642561715 1 0.106198072433472 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521506 chr6:26521488 . . 0 3 hm5C_associated_SNPs_5788 0 0 1 0 0 unknown 1 0.500231629564086 1 0.999536740871828 hm5C_site_8660 DeepMRMD:1;iRNA_m5C:0.999536740871828 8661 chr6 26521488 26521488 1 + G A rs192544521 26521507 + 26521487 26521527 41 TGGAGGCGTGGGTTCGAATCCCACTCCTGACAGTTCGTACT TAGAGGCGTGGGTTCGAATCCCACTCCTGACAGTTCGTACT < 41bp 1 0.120258950400515 1 0.122910141944885 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521507 chr6:26521488 . . 0 2 hm5C_associated_SNPs_5789 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_8661 DeepMRMD:1;iRNA_m5C:0.999536712157818 8662 chr6 26521488 26521488 1 + G A rs192544521 26521508 + 26521488 26521528 41 GGAGGCGTGGGTTCGAATCCCACTCCTGACAGTTCGTACTT AGAGGCGTGGGTTCGAATCCCACTCCTGACAGTTCGTACTT < 41bp 1 0.217895804426163 1 0.0490269958972931 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG11 ENSG00000228223 upstream Human lincRNA chr6:26521508 chr6:26521488 . . 0 1 hm5C_associated_SNPs_5790 0 0 1 0 0 unknown 1 0.500231644022558 1 0.999536711954883 hm5C_site_8662 DeepMRMD:1;iRNA_m5C:0.999536711954883 8663 chr6 26537730 26537730 1 + C T rs78665123 26537729 + 26537709 26537749 41 CCCCTAAGGTACGCGCAGGGCCAGTGGCGCAATGGATAACG CCCCTAAGGTACGCGCAGGGCTAGTGGCGCAATGGATAACG < 41bp 1 0.535008340819044 1 0.156847268342972 experiment 0.929983318361912 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26537729 chr6:26537730 . . 0 22 hm5C_associated_SNPs_5791 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_8663 DeepMRMD:1;iRNA_m5C:0.999536712157816 8664 chr6 26537732 26537732 1 + G A rs149463913 26537729 + 26537709 26537749 41 CCCCTAAGGTACGCGCAGGGCCAGTGGCGCAATGGATAACG CCCCTAAGGTACGCGCAGGGCCAATGGCGCAATGGATAACG < 41bp 1 0.130487513551946 1 0.0717548727989197 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26537729 chr6:26537732 . . 0 24 hm5C_associated_SNPs_5793 0 0 1 0 0 Cytosol 1 0.500231643921047 1 0.999536712157907 hm5C_site_8664 DeepMRMD:1;iRNA_m5C:0.999536712157907 8665 chr6 26537746 26537746 1 + A G rs116347594 26537729 + 26537709 26537749 41 CCCCTAAGGTACGCGCAGGGCCAGTGGCGCAATGGATAACG CCCCTAAGGTACGCGCAGGGCCAGTGGCGCAATGGATGACG < 41bp 1 0.312346671451025 1 0.199260175228119 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26537729 chr6:26537746 . . 0 38 hm5C_associated_SNPs_5794 0 0 1 0 0 Cytosol 1 0.500231643921028 1 0.999536712157943 hm5C_site_8665 DeepMRMD:1;iRNA_m5C:0.999536712157943 8666 chr6 26537798 26537798 1 + G A rs143893043 26537781 + 26537761 26537801 41 GGATCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGGTG GGATCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCAGTG < 41bp 1 0.233451020767757 1 0.115375280380249 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26537781 chr6:26537798 . . 0 38 hm5C_associated_SNPs_5796 0 0 1 0 0 Cytosol 1 0.50023157833547 1 0.99953684332906 hm5C_site_8666 DeepMRMD:1;iRNA_m5C:0.99953684332906 8667 chr6 26538287 26538287 1 + C G rs190949316 26538306 + 26538286 26538326 41 CCGTAGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAG CGGTAGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAG < 41bp 1 0.0863699010160351 1 0.155587285757065 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538306 chr6:26538287 . . 0 2 hm5C_associated_SNPs_5799 0 0 1 0 0 Cytosol 1 0.500231627082162 1 0.999536745835677 hm5C_site_8667 DeepMRMD:1;iRNA_m5C:0.999536745835677 8668 chr6 26538292 26538292 1 + T C rs147742184 26538286 + 26538266 26538306 41 AATAAGCCCTTAGTGGGTTTCCGTAGTGTAGTGGTTATCAC AATAAGCCCTTAGTGGGTTTCCGTAGCGTAGTGGTTATCAC < 41bp 1 0.326810797065898 1 0.359179317951202 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538286 chr6:26538292 . . 0 27 hm5C_associated_SNPs_5800 0 0 1 0 0 Cytosol 1 0.500231643879009 1 0.999536712241982 hm5C_site_8668 DeepMRMD:1;iRNA_m5C:0.999536712241982 8669 chr6 26538292 26538292 1 + T C rs147742184 26538287 + 26538267 26538307 41 ATAAGCCCTTAGTGGGTTTCCGTAGTGTAGTGGTTATCACG ATAAGCCCTTAGTGGGTTTCCGTAGCGTAGTGGTTATCACG < 41bp 1 0.205013974961248 1 0.208754867315292 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538287 chr6:26538292 . . 0 26 hm5C_associated_SNPs_5801 0 0 1 0 0 Cytosol 1 0.50023172368296 1 0.999536552634081 hm5C_site_8669 DeepMRMD:1;iRNA_m5C:0.999536552634081 8670 chr6 26538292 26538292 1 + T C rs147742184 26538306 + 26538286 26538326 41 CCGTAGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAG CCGTAGCGTAGTGGTTATCACGTTCGCCTCACACGCGAAAG < 41bp 1 0.105366437988317 1 0.120933353900909 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538306 chr6:26538292 . . 0 7 hm5C_associated_SNPs_5803 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_8670 DeepMRMD:1;iRNA_m5C:0.999536712157815 8671 chr6 26538292 26538292 1 + T C rs147742184 26538310 + 26538290 26538330 41 AGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCC AGCGTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCC < 41bp 1 0.199719777890918 1 0.751874566078186 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538310 chr6:26538292 . . 0 3 hm5C_associated_SNPs_5804 0 0 1 0 0 Cytosol 1 0.500231643490253 0.496250867843628 0.999536713019494 hm5C_site_8671 DeepMRMD:0.496250867843628;iRNA_m5C:0.999536713019494 8672 chr6 26538292 26538292 1 + T C rs147742184 26538312 + 26538292 26538332 41 TGTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCC CGTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCC < 41bp 1 0.165247218725675 1 0.324098169803619 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538312 chr6:26538292 . . 0 1 hm5C_associated_SNPs_5805 0 0 1 0 0 Cytosol 1 0.500231642399058 1 0.999536715201884 hm5C_site_8672 DeepMRMD:1;iRNA_m5C:0.999536715201884 8673 chr6 26538326 26538326 1 + G A rs190989298 26538306 + 26538286 26538326 41 CCGTAGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAG CCGTAGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAA < 41bp 1 0.0931286738761998 1 0.0958474278450012 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538306 chr6:26538326 . . 0 41 hm5C_associated_SNPs_5806 0 0 1 0 0 Cytosol 1 0.500231643517013 1 0.999536712965974 hm5C_site_8673 DeepMRMD:1;iRNA_m5C:0.999536712965974 8674 chr6 26538326 26538326 1 + G A rs190989298 26538310 + 26538290 26538330 41 AGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCC AGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAAGTCC < 41bp 1 0.20804479521715 1 0.718845963478088 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538310 chr6:26538326 . . 0 37 hm5C_associated_SNPs_5807 0 0 1 0 0 Cytosol 1 0.500231643899264 0.562308073043824 0.999536712201472 hm5C_site_8674 DeepMRMD:0.562308073043824;iRNA_m5C:0.999536712201472 8675 chr6 26538326 26538326 1 + G A rs190989298 26538312 + 26538292 26538332 41 TGTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCC TGTAGTGGTTATCACGTTCGCCTCACACGCGAAAAGTCCCC < 41bp 1 0.155147903561837 1 0.474003583192825 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538312 chr6:26538326 . . 0 35 hm5C_associated_SNPs_5808 0 0 1 0 0 Cytosol 1 0.500231634162162 1 0.999536731675675 hm5C_site_8675 DeepMRMD:1;iRNA_m5C:0.999536731675675 8676 chr6 26538326 26538326 1 + G A rs190989298 26538313 + 26538293 26538333 41 GTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCG GTAGTGGTTATCACGTTCGCCTCACACGCGAAAAGTCCCCG < 41bp 1 0.0860407418426226 1 0.368951052427292 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538313 chr6:26538326 . . 0 34 hm5C_associated_SNPs_5809 0 0 1 0 0 Cytosol 1 0.500269728967546 1 0.999460542064908 hm5C_site_8676 DeepMRMD:1;iRNA_m5C:0.999460542064908 8677 chr6 26538326 26538326 1 + G A rs190989298 26538315 + 26538295 26538335 41 AGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGT AGTGGTTATCACGTTCGCCTCACACGCGAAAAGTCCCCGGT < 41bp 1 0.218661000006498 1 0.306784272193909 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538315 chr6:26538326 . . 0 32 hm5C_associated_SNPs_5810 0 0 1 0 0 Cytosol 1 0.500231656150632 1 0.999536687698735 hm5C_site_8677 DeepMRMD:1;iRNA_m5C:0.999536687698735 8678 chr6 26538326 26538326 1 + G A rs190989298 26538317 + 26538297 26538337 41 TGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTC TGGTTATCACGTTCGCCTCACACGCGAAAAGTCCCCGGTTC < 41bp 1 0.417858668056472 1 0.429407000541687 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538317 chr6:26538326 . . 0 30 hm5C_associated_SNPs_5811 0 0 1 0 0 Cytosol 1 0.500238507082597 1 0.999522985834806 hm5C_site_8678 DeepMRMD:1;iRNA_m5C:0.999522985834806 8679 chr6 26538326 26538326 1 + G A rs190989298 26538321 + 26538301 26538341 41 TATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAA TATCACGTTCGCCTCACACGCGAAAAGTCCCCGGTTCGAAA < 41bp 1 0.497120035356835 1 0.511073648929596 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538321 chr6:26538326 . . 0 26 hm5C_associated_SNPs_5812 0 0 1 0 0 Cytosol 1 0.500218968074047 0.977852702140808 0.999562063851905 hm5C_site_8679 DeepMRMD:0.977852702140808;iRNA_m5C:0.999562063851905 8680 chr6 26538326 26538326 1 + G A rs190989298 26538332 + 26538312 26538352 41 CCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA CCTCACACGCGAAAAGTCCCCGGTTCGAAACCGGGCGGAAA < 41bp 1 0.207195809616084 1 0.0862279832363129 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538332 chr6:26538326 . . 0 15 hm5C_associated_SNPs_5813 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8680 DeepMRMD:1;iRNA_m5C:0.999536712157815 8681 chr6 26538330 26538330 1 + C A rs140930809 26538310 + 26538290 26538330 41 AGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCC AGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCA < 41bp 1 0.223786335544799 1 0.766175389289856 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538310 chr6:26538330 . . 0 41 hm5C_associated_SNPs_5814 0 0 1 0 0 Cytosol 1 0.500232303093573 0.467649221420288 0.999535393812853 hm5C_site_8681 DeepMRMD:0.467649221420288;iRNA_m5C:0.999535393812853 8682 chr6 26538330 26538330 1 + C A rs140930809 26538312 + 26538292 26538332 41 TGTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCC TGTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCACC < 41bp 1 0.136154755307493 1 0.410706281661987 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538312 chr6:26538330 . . 0 39 hm5C_associated_SNPs_5815 0 0 1 0 0 Cytosol 1 0.500231643906841 1 0.999536712186319 hm5C_site_8682 DeepMRMD:1;iRNA_m5C:0.999536712186319 8683 chr6 26538330 26538330 1 + C A rs140930809 26538313 + 26538293 26538333 41 GTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCG GTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCACCG < 41bp 1 0.0928820532320834 1 0.337578177452087 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538313 chr6:26538330 . . 0 38 hm5C_associated_SNPs_5816 0 0 1 0 0 Cytosol 1 0.500308743469522 1 0.999382513060956 hm5C_site_8683 DeepMRMD:1;iRNA_m5C:0.999382513060956 8684 chr6 26538330 26538330 1 + C A rs140930809 26538315 + 26538295 26538335 41 AGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGT AGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCACCGGT < 41bp 1 0.192491459787513 1 0.110009849071503 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538315 chr6:26538330 . . 0 36 hm5C_associated_SNPs_5817 0 0 1 0 0 Cytosol 1 0.500231126775536 1 0.999537746448928 hm5C_site_8684 DeepMRMD:1;iRNA_m5C:0.999537746448928 8685 chr6 26538330 26538330 1 + C A rs140930809 26538317 + 26538297 26538337 41 TGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTC TGGTTATCACGTTCGCCTCACACGCGAAAGGTCACCGGTTC < 41bp 1 0.372875451879824 1 0.141023278236389 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538317 chr6:26538330 . . 0 34 hm5C_associated_SNPs_5818 0 0 1 0 0 Cytosol 1 0.500228057204741 1 0.999543885590518 hm5C_site_8685 DeepMRMD:1;iRNA_m5C:0.999543885590518 8686 chr6 26538330 26538330 1 + C A rs140930809 26538321 + 26538301 26538341 41 TATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAA TATCACGTTCGCCTCACACGCGAAAGGTCACCGGTTCGAAA < 41bp 1 0.55817848608222 1 0.330103188753128 experiment 0.883643027835559 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538321 chr6:26538330 . . 0 30 hm5C_associated_SNPs_5819 0 0 1 0 0 Cytosol 1 0.500231643901447 1 0.999536712197106 hm5C_site_8686 DeepMRMD:1;iRNA_m5C:0.999536712197106 8687 chr6 26538330 26538330 1 + C A rs140930809 26538332 + 26538312 26538352 41 CCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA CCTCACACGCGAAAGGTCACCGGTTCGAAACCGGGCGGAAA < 41bp 1 0.222616891423413 1 0.13078910112381 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538332 chr6:26538330 . . 0 19 hm5C_associated_SNPs_5820 0 0 1 0 0 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_8687 DeepMRMD:1;iRNA_m5C:0.999536712157818 8688 chr6 26538343 26538343 1 + C A rs569367600 26538332 + 26538312 26538352 41 CCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA CCTCACACGCGAAAGGTCCCCGGTTCGAAACAGGGCGGAAA < 41bp 1 0.207403802784369 1 0.110215604305267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538332 chr6:26538343 . . 0 32 hm5C_associated_SNPs_5821 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_8688 DeepMRMD:1;iRNA_m5C:0.999536712157815 8689 chr6 26538349 26538349 1 + G A rs537828380 26538332 + 26538312 26538352 41 CCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAA CCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGAAAA < 41bp 1 0.200406173761748 1 0.065681129693985 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4 ENSG00000182952 upstream Human protein_coding chr6:26538332 chr6:26538349 . . 0 38 hm5C_associated_SNPs_5822 0 0 1 0 0 Cytosol 1 0.500231643920309 1 0.999536712159381 hm5C_site_8689 DeepMRMD:1;iRNA_m5C:0.999536712159381 8690 chr6 26554380 26554380 1 + T C rs559301348 26554360 + 26554340 26554380 41 GGAGACAGGTGGCCGGTTAGCTCAGTTGGTTAGAGCGTGGT GGAGACAGGTGGCCGGTTAGCTCAGTTGGTTAGAGCGTGGC < 41bp 1 0.680282308910892 1 0.369744867086411 experiment 0.639435382178217 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26554360 chr6:26554380 . . 0 41 hm5C_associated_SNPs_5823 0 0 1 0 0 unknown 1 0.500231643921035 1 0.99953671215793 hm5C_site_8690 DeepMRMD:1;iRNA_m5C:0.99953671215793 8691 chr6 26554380 26554380 1 + T C rs559301348 26554375 + 26554355 26554395 41 GTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAG GTTAGCTCAGTTGGTTAGAGCGTGGCGCTAATAACGCCAAG < 41bp 1 0.607451725870756 1 0.484980940818787 experiment 0.785096548258489 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26554375 chr6:26554380 . . 0 26 hm5C_associated_SNPs_5824 0 0 1 0 0 unknown 1 0.50023160835127 1 0.999536783297459 hm5C_site_8691 DeepMRMD:1;iRNA_m5C:0.999536783297459 8692 chr6 26554380 26554380 1 + T C rs559301348 26554392 + 26554372 26554412 41 GAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCC GAGCGTGGCGCTAATAACGCCAAGGTCGCGGGTTCGATCCC < 41bp 1 0.6363982623127 1 0.458720743656158 experiment 0.7272034753746 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26554392 chr6:26554380 . . 0 9 hm5C_associated_SNPs_5825 0 0 1 0 0 unknown 1 0.500231643920964 1 0.999536712158072 hm5C_site_8692 DeepMRMD:1;iRNA_m5C:0.999536712158072 8693 chr6 26554380 26554380 1 + T C rs559301348 26554400 + 26554380 26554420 41 TGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGG CGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGG < 41bp 1 0.637991892983274 1 0.778744161128998 experiment 0.724016214033451 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26554400 chr6:26554380 . . 0 1 hm5C_associated_SNPs_5826 0 0 1 0 0 unknown 1 0.500231643912424 0.442511677742004 0.999536712175153 hm5C_site_8693 DeepMRMD:0.442511677742004;iRNA_m5C:0.999536712175153 8694 chr6 26555548 26555548 1 + G A rs543842360 26555545 + 26555525 26555565 41 CGCTTAGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGA CGCTTAGGGTGCGAGAGGTCCCGAGTTCAAATCCCGGACGA < 41bp 1 0.603591774036019 1 0.446463227272034 experiment 0.792816451927963 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26555545 chr6:26555548 . . 0 24 hm5C_associated_SNPs_5828 0 0 1 0 0 unknown 1 0.50023164392109 1 0.99953671215782 hm5C_site_8694 DeepMRMD:1;iRNA_m5C:0.99953671215782 8695 chr6 26555548 26555548 1 + G A rs543842360 26555563 + 26555543 26555583 41 TCCCGGGTTCAAATCCCGGACGAGCCCTAGTTTTGTCCCTT TCCCGAGTTCAAATCCCGGACGAGCCCTAGTTTTGTCCCTT < 41bp 1 0.210367229583041 1 0.193556129932404 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26555563 chr6:26555548 . . 0 6 hm5C_associated_SNPs_5830 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8695 DeepMRMD:1;iRNA_m5C:0.999536712157815 8696 chr6 26556774 26556774 1 + G A rs560161343 26556775 + 26556755 26556795 41 AAGAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAG AAGAGCTACGTTCGGGTGAACCCGGCTAGCTCAGTCGGTAG < 41bp 1 0.484639674134281 1 0.157790809869766 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556775 chr6:26556774 . . 0 20 hm5C_associated_SNPs_5831 0 0 1 0 0 unknown 1 0.500231579147588 1 0.999536841704824 hm5C_site_8696 DeepMRMD:1;iRNA_m5C:0.999536841704824 8697 chr6 26556774 26556774 1 + G A rs560161343 26556776 + 26556756 26556796 41 AGAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGA AGAGCTACGTTCGGGTGAACCCGGCTAGCTCAGTCGGTAGA < 41bp 1 0.358708577382862 1 0.837800204753876 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556776 chr6:26556774 . . 0 19 hm5C_associated_SNPs_5832 0 0 1 0 0 unknown 1 0.500231644750152 0.324399590492248 0.999536710499696 hm5C_site_8697 DeepMRMD:0.324399590492248;iRNA_m5C:0.999536710499696 8698 chr6 26556774 26556774 1 + G A rs560161343 26556777 + 26556757 26556797 41 GAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAG GAGCTACGTTCGGGTGAACCCGGCTAGCTCAGTCGGTAGAG < 41bp 1 0.639894966908375 1 0.773037672042847 experiment 0.72021006618325 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556777 chr6:26556774 . . 0 18 hm5C_associated_SNPs_5833 0 0 1 0 0 unknown 1 0.500231643915346 0.453924655914306 0.999536712169309 hm5C_site_8698 DeepMRMD:0.453924655914306;iRNA_m5C:0.999536712169309 8699 chr6 26556774 26556774 1 + G A rs560161343 26556780 + 26556760 26556800 41 CTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCAT CTACGTTCGGGTGAACCCGGCTAGCTCAGTCGGTAGAGCAT < 41bp 1 0.200076029545128 1 0.0725846886634827 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556780 chr6:26556774 . . 0 15 hm5C_associated_SNPs_5834 0 0 1 0 0 unknown 1 0.500231643981656 1 0.999536712036688 hm5C_site_8699 DeepMRMD:1;iRNA_m5C:0.999536712036688 8700 chr6 26556774 26556774 1 + G A rs560161343 26556784 + 26556764 26556804 41 GTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGA GTTCGGGTGAACCCGGCTAGCTCAGTCGGTAGAGCATGAGA < 41bp 1 0.660820348684791 1 0.173117727041245 experiment 0.678359302630418 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556784 chr6:26556774 . . 0 11 hm5C_associated_SNPs_5835 0 0 1 0 0 unknown 1 0.500231643936672 1 0.999536712126657 hm5C_site_8700 DeepMRMD:1;iRNA_m5C:0.999536712126657 8701 chr6 26556774 26556774 1 + G A rs560161343 26556786 + 26556766 26556806 41 TCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACT TCGGGTGAACCCGGCTAGCTCAGTCGGTAGAGCATGAGACT < 41bp 1 0.314409507868247 1 0.345606505870819 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556786 chr6:26556774 . . 0 9 hm5C_associated_SNPs_5836 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8701 DeepMRMD:1;iRNA_m5C:0.999536712157815 8702 chr6 26556784 26556784 1 + C T rs186106605 26556775 + 26556755 26556795 41 AAGAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAG AAGAGCTACGTTCGGGTGAGCCCGGCTAGTTCAGTCGGTAG < 41bp 1 0.436353450724442 1 0.233109354972839 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556775 chr6:26556784 . . 0 30 hm5C_associated_SNPs_5838 0 0 1 0 0 unknown 1 0.500231643577551 1 0.999536712844898 hm5C_site_8702 DeepMRMD:1;iRNA_m5C:0.999536712844898 8703 chr6 26556784 26556784 1 + C T rs186106605 26556776 + 26556756 26556796 41 AGAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGA AGAGCTACGTTCGGGTGAGCCCGGCTAGTTCAGTCGGTAGA < 41bp 1 0.289445488703535 1 0.729590952396393 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556776 chr6:26556784 . . 0 29 hm5C_associated_SNPs_5839 0 0 1 0 0 unknown 1 0.500231644054267 0.540818095207214 0.999536711891467 hm5C_site_8703 DeepMRMD:0.540818095207214;iRNA_m5C:0.999536711891467 8704 chr6 26556784 26556784 1 + C T rs186106605 26556777 + 26556757 26556797 41 GAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAG GAGCTACGTTCGGGTGAGCCCGGCTAGTTCAGTCGGTAGAG < 41bp 1 0.531155372932687 1 0.768963217735291 experiment 0.937689254134627 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556777 chr6:26556784 . . 0 28 hm5C_associated_SNPs_5840 0 0 1 0 0 unknown 1 0.500231644025993 0.462073564529418 0.999536711948014 hm5C_site_8704 DeepMRMD:0.462073564529418;iRNA_m5C:0.999536711948014 8705 chr6 26556784 26556784 1 + C T rs186106605 26556780 + 26556760 26556800 41 CTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCAT CTACGTTCGGGTGAGCCCGGCTAGTTCAGTCGGTAGAGCAT < 41bp 1 0.2724092784837 1 0.105085492134094 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556780 chr6:26556784 . . 0 25 hm5C_associated_SNPs_5841 0 0 1 0 0 unknown 1 0.500231643921101 1 0.999536712157798 hm5C_site_8705 DeepMRMD:1;iRNA_m5C:0.999536712157798 8706 chr6 26556784 26556784 1 + C T rs186106605 26556786 + 26556766 26556806 41 TCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACT TCGGGTGAGCCCGGCTAGTTCAGTCGGTAGAGCATGAGACT < 41bp 1 0.353356109942116 1 0.374628484249115 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556786 chr6:26556784 . . 0 19 hm5C_associated_SNPs_5842 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8706 DeepMRMD:1;iRNA_m5C:0.999536712157815 8707 chr6 26556784 26556784 1 + C T rs186106605 26556798 + 26556778 26556818 41 GGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG GGCTAGTTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG < 41bp 1 0.667209487437955 1 0.173702597618103 experiment 0.66558102512409 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556798 chr6:26556784 . . 0 7 hm5C_associated_SNPs_5844 0 0 1 0 0 unknown 1 0.500231565418687 1 0.999536869162625 hm5C_site_8707 DeepMRMD:1;iRNA_m5C:0.999536869162625 8708 chr6 26556790 26556790 1 + C A rs568173750 26556775 + 26556755 26556795 41 AAGAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAG AAGAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTAGGTAG < 41bp 1 0.427747731168098 1 0.153298139572144 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556775 chr6:26556790 . . 0 36 hm5C_associated_SNPs_5845 0 0 1 0 0 unknown 1 0.500231643921053 1 0.999536712157895 hm5C_site_8708 DeepMRMD:1;iRNA_m5C:0.999536712157895 8709 chr6 26556790 26556790 1 + C A rs568173750 26556776 + 26556756 26556796 41 AGAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGA AGAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTAGGTAGA < 41bp 1 0.258821291997188 1 0.736139178276062 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556776 chr6:26556790 . . 0 35 hm5C_associated_SNPs_5846 0 0 1 0 0 unknown 1 0.500231643944095 0.527721643447876 0.99953671211181 hm5C_site_8709 DeepMRMD:0.527721643447876;iRNA_m5C:0.99953671211181 8710 chr6 26556790 26556790 1 + C A rs568173750 26556777 + 26556757 26556797 41 GAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAG GAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTAGGTAGAG < 41bp 1 0.512224542453829 1 0.64509129524231 experiment 0.975550915092342 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556777 chr6:26556790 . . 0 34 hm5C_associated_SNPs_5847 0 0 1 0 0 unknown 1 0.50023164669724 0.70981740951538 0.999536706605521 hm5C_site_8710 DeepMRMD:0.70981740951538;iRNA_m5C:0.999536706605521 8711 chr6 26556790 26556790 1 + C A rs568173750 26556780 + 26556760 26556800 41 CTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCAT CTACGTTCGGGTGAGCCCGGCTAGCTCAGTAGGTAGAGCAT < 41bp 1 0.215278499203029 1 0.150166690349579 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556780 chr6:26556790 . . 0 31 hm5C_associated_SNPs_5848 0 0 1 0 0 unknown 1 0.500231554097395 1 0.999536891805209 hm5C_site_8711 DeepMRMD:1;iRNA_m5C:0.999536891805209 8712 chr6 26556790 26556790 1 + C A rs568173750 26556798 + 26556778 26556818 41 GGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG GGCTAGCTCAGTAGGTAGAGCATGAGACTCTTAATCTCAGG < 41bp 1 0.652439295667712 1 0.196646809577942 experiment 0.695121408664576 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556798 chr6:26556790 . . 0 13 hm5C_associated_SNPs_5851 0 0 1 0 0 unknown 1 0.500231643620077 1 0.999536712759846 hm5C_site_8712 DeepMRMD:1;iRNA_m5C:0.999536712759846 8713 chr6 26556790 26556790 1 + C A rs568173750 26556805 + 26556785 26556825 41 TCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG TCAGTAGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG < 41bp 1 0.161835241305497 1 0.0222905874252319 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556805 chr6:26556790 . . 0 6 hm5C_associated_SNPs_5852 0 0 1 0 0 unknown 1 0.500231662072687 1 0.999536675854626 hm5C_site_8713 DeepMRMD:1;iRNA_m5C:0.999536675854626 8714 chr6 26556790 26556790 1 + C A rs568173750 26556807 + 26556787 26556827 41 AGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGT AGTAGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGT < 41bp 1 0.423914999914778 1 0.271086394786835 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556807 chr6:26556790 . . 0 4 hm5C_associated_SNPs_5853 0 0 1 0 0 unknown 1 0.500231643954944 1 0.999536712090111 hm5C_site_8714 DeepMRMD:1;iRNA_m5C:0.999536712090111 8715 chr6 26556797 26556797 1 + G A rs60532838 26556777 + 26556757 26556797 41 GAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAG GAGCTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAA < 41bp 1 0.556471131411692 1 0.625701427459717 experiment 0.887057737176616 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556777 chr6:26556797 . . 0 41 hm5C_associated_SNPs_5854 0 0 1 0 0 unknown 1 0.500231643955449 0.748597145080566 0.999536712089103 hm5C_site_8715 DeepMRMD:0.748597145080566;iRNA_m5C:0.999536712089103 8716 chr6 26556797 26556797 1 + G A rs60532838 26556780 + 26556760 26556800 41 CTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCAT CTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAACAT < 41bp 1 0.197764149215405 1 0.115139335393906 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556780 chr6:26556797 . . 0 38 hm5C_associated_SNPs_5855 0 0 1 0 0 unknown 1 0.500231643937336 1 0.999536712125328 hm5C_site_8716 DeepMRMD:1;iRNA_m5C:0.999536712125328 8717 chr6 26556797 26556797 1 + G A rs60532838 26556784 + 26556764 26556804 41 GTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGA GTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAACATGAGA < 41bp 1 0.660100327028184 1 0.20140752196312 experiment 0.679799345943632 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556784 chr6:26556797 . . 0 34 hm5C_associated_SNPs_5856 0 0 1 0 0 unknown 1 0.500231355158945 1 0.99953728968211 hm5C_site_8717 DeepMRMD:1;iRNA_m5C:0.99953728968211 8718 chr6 26556797 26556797 1 + G A rs60532838 26556786 + 26556766 26556806 41 TCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACT TCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAACATGAGACT < 41bp 1 0.352201919474404 1 0.474842876195908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556786 chr6:26556797 . . 0 32 hm5C_associated_SNPs_5857 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8718 DeepMRMD:1;iRNA_m5C:0.999536712157815 8719 chr6 26556797 26556797 1 + G A rs60532838 26556805 + 26556785 26556825 41 TCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG TCAGTCGGTAGAACATGAGACTCTTAATCTCAGGGTCGTGG < 41bp 1 0.111221897006396 1 0.0168132483959198 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556805 chr6:26556797 . . 0 13 hm5C_associated_SNPs_5860 0 0 1 0 0 unknown 1 0.500231644811075 1 0.99953671037785 hm5C_site_8719 DeepMRMD:1;iRNA_m5C:0.99953671037785 8720 chr6 26556797 26556797 1 + G A rs60532838 26556807 + 26556787 26556827 41 AGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGT AGTCGGTAGAACATGAGACTCTTAATCTCAGGGTCGTGGGT < 41bp 1 0.419921253364282 1 0.253679603338242 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556807 chr6:26556797 . . 0 11 hm5C_associated_SNPs_5861 0 0 1 0 0 unknown 1 0.500231790148479 1 0.999536419703043 hm5C_site_8720 DeepMRMD:1;iRNA_m5C:0.999536419703043 8721 chr6 26556797 26556797 1 + G A rs60532838 26556813 + 26556793 26556833 41 TAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC TAGAACATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC < 41bp 1 0.65002960193672 1 0.62607216835022 experiment 0.69994079612656 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556813 chr6:26556797 . . 0 5 hm5C_associated_SNPs_5862 0 0 1 0 0 unknown 1 0.500231644051428 0.74785566329956 0.999536711897143 hm5C_site_8721 DeepMRMD:0.74785566329956;iRNA_m5C:0.999536711897143 8722 chr6 26556800 26556800 1 + T C rs181253315 26556780 + 26556760 26556800 41 CTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCAT CTACGTTCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCAC < 41bp 1 0.232539740563899 1 0.146720856428146 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556780 chr6:26556800 . . 0 41 hm5C_associated_SNPs_5863 0 0 1 0 0 unknown 1 0.500231643923472 1 0.999536712153055 hm5C_site_8722 DeepMRMD:1;iRNA_m5C:0.999536712153055 8723 chr6 26556800 26556800 1 + T C rs181253315 26556786 + 26556766 26556806 41 TCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACT TCGGGTGAGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACT < 41bp 1 0.374249142964966 1 0.496026456356049 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556786 chr6:26556800 . . 0 35 hm5C_associated_SNPs_5865 0 0 1 0 0 unknown 1 0.50023164392088 1 0.999536712158241 hm5C_site_8723 DeepMRMD:1;iRNA_m5C:0.999536712158241 8724 chr6 26556800 26556800 1 + T C rs181253315 26556805 + 26556785 26556825 41 TCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG TCAGTCGGTAGAGCACGAGACTCTTAATCTCAGGGTCGTGG < 41bp 1 0.137426126224398 1 0.0185150802135468 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556805 chr6:26556800 . . 0 16 hm5C_associated_SNPs_5867 0 0 1 0 0 unknown 1 0.500231871652947 1 0.999536256694106 hm5C_site_8724 DeepMRMD:1;iRNA_m5C:0.999536256694106 8725 chr6 26556800 26556800 1 + T C rs181253315 26556807 + 26556787 26556827 41 AGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGT AGTCGGTAGAGCACGAGACTCTTAATCTCAGGGTCGTGGGT < 41bp 1 0.450332577010201 1 0.298878371715546 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556807 chr6:26556800 . . 0 14 hm5C_associated_SNPs_5868 0 0 1 0 0 unknown 1 0.500231653312943 1 0.999536693374115 hm5C_site_8725 DeepMRMD:1;iRNA_m5C:0.999536693374115 8726 chr6 26556800 26556800 1 + T C rs181253315 26556813 + 26556793 26556833 41 TAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC TAGAGCACGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC < 41bp 1 0.641830106195944 1 0.708553075790405 experiment 0.716339787608112 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556813 chr6:26556800 . . 0 8 hm5C_associated_SNPs_5869 0 0 1 0 0 unknown 1 0.500231643919328 0.58289384841919 0.999536712161344 hm5C_site_8726 DeepMRMD:0.58289384841919;iRNA_m5C:0.999536712161344 8727 chr6 26556835 26556835 1 + C T rs149649999 26556821 + 26556801 26556841 41 GAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTT GAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCTCACGTT < 41bp 1 0.537281559650702 1 0.391602545976639 experiment 0.925436880698596 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556821 chr6:26556835 . . 0 35 hm5C_associated_SNPs_5870 0 0 1 0 0 unknown 1 0.500231653216629 1 0.999536693566743 hm5C_site_8727 DeepMRMD:1;iRNA_m5C:0.999536693566743 8728 chr6 26556835 26556835 1 + C T rs149649999 26556829 + 26556809 26556849 41 TAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTC TAATCTCAGGGTCGTGGGTTCGAGCCTCACGTTGGGCGCTC < 41bp 1 0.550442592549543 1 0.342620849609375 experiment 0.899114814900915 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556829 chr6:26556835 . . 0 27 hm5C_associated_SNPs_5871 0 0 1 0 0 unknown 1 0.500231643921089 1 0.999536712157821 hm5C_site_8728 DeepMRMD:1;iRNA_m5C:0.999536712157821 8729 chr6 26556835 26556835 1 + C T rs149649999 26556833 + 26556813 26556853 41 CTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTCTGGT CTCAGGGTCGTGGGTTCGAGCCTCACGTTGGGCGCTCTGGT < 41bp 1 0.147839949594939 1 0.0408495664596558 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556833 chr6:26556835 . . 0 23 hm5C_associated_SNPs_5872 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8729 DeepMRMD:1;iRNA_m5C:0.999536712157815 8730 chr6 26556835 26556835 1 + C T rs149649999 26556834 + 26556814 26556854 41 TCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTCTGGTT TCAGGGTCGTGGGTTCGAGCCTCACGTTGGGCGCTCTGGTT < 41bp 1 0.304267528989721 1 0.148253947496414 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556834 chr6:26556835 . . 0 22 hm5C_associated_SNPs_5873 0 0 1 0 0 unknown 1 0.50023164433048 1 0.99953671133904 hm5C_site_8730 DeepMRMD:1;iRNA_m5C:0.99953671133904 8731 chr6 26556835 26556835 1 + C T rs149649999 26556836 + 26556816 26556856 41 AGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTCTGGTTTT AGGGTCGTGGGTTCGAGCCTCACGTTGGGCGCTCTGGTTTT < 41bp 1 0.543753897637539 1 0.562356114387512 experiment 0.912492204724921 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556836 chr6:26556835 . . 0 20 hm5C_associated_SNPs_5874 0 0 1 0 0 unknown 1 0.500231643978739 0.875287771224976 0.999536712042523 hm5C_site_8731 DeepMRMD:0.875287771224976;iRNA_m5C:0.999536712042523 Blood protein levels 8732 chr6 26556835 26556835 1 + C T rs149649999 26556845 + 26556825 26556865 41 GGTTCGAGCCCCACGTTGGGCGCTCTGGTTTTCAATCCTAA GGTTCGAGCCTCACGTTGGGCGCTCTGGTTTTCAATCCTAA < 41bp 1 0.130400370102395 1 0.0811045169830322 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556845 chr6:26556835 . . 0 11 hm5C_associated_SNPs_5875 0 0 1 0 0 unknown 1 0.500231643921044 1 0.999536712157912 hm5C_site_8732 DeepMRMD:1;iRNA_m5C:0.999536712157912 8733 chr6 26556843 26556843 1 + G A rs80287740 26556829 + 26556809 26556849 41 TAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTC TAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGAGCGCTC < 41bp 1 0.45309376726743 1 0.472781985998154 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556829 chr6:26556843 . . 0 35 hm5C_associated_SNPs_5876 0 0 1 0 0 unknown 1 0.500231643566377 1 0.999536712867247 hm5C_site_8733 DeepMRMD:1;iRNA_m5C:0.999536712867247 8734 chr6 26556843 26556843 1 + G A rs80287740 26556833 + 26556813 26556853 41 CTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTCTGGT CTCAGGGTCGTGGGTTCGAGCCCCACGTTGAGCGCTCTGGT < 41bp 1 0.381022637945384 1 0.0661522448062897 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556833 chr6:26556843 . . 0 31 hm5C_associated_SNPs_5877 0 0 1 0 0 unknown 1 0.500231643917714 1 0.999536712164572 hm5C_site_8734 DeepMRMD:1;iRNA_m5C:0.999536712164572 8735 chr6 26556843 26556843 1 + G A rs80287740 26556834 + 26556814 26556854 41 TCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTCTGGTT TCAGGGTCGTGGGTTCGAGCCCCACGTTGAGCGCTCTGGTT < 41bp 1 0.134031172541225 1 0.0797657668590546 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556834 chr6:26556843 . . 0 30 hm5C_associated_SNPs_5878 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_8735 DeepMRMD:1;iRNA_m5C:0.999536712157816 8736 chr6 26556843 26556843 1 + G A rs80287740 26556835 + 26556815 26556855 41 CAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTCTGGTTT CAGGGTCGTGGGTTCGAGCCCCACGTTGAGCGCTCTGGTTT < 41bp 1 0.335897463750604 1 0.103352934122086 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556835 chr6:26556843 . . 0 29 hm5C_associated_SNPs_5879 0 0 1 0 0 unknown 1 0.500231643814697 1 0.999536712370607 hm5C_site_8736 DeepMRMD:1;iRNA_m5C:0.999536712370607 8737 chr6 26556843 26556843 1 + G A rs80287740 26556836 + 26556816 26556856 41 AGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTCTGGTTTT AGGGTCGTGGGTTCGAGCCCCACGTTGAGCGCTCTGGTTTT < 41bp 1 0.467481745071875 1 0.43321093916893 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556836 chr6:26556843 . . 0 28 hm5C_associated_SNPs_5880 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8737 DeepMRMD:1;iRNA_m5C:0.999536712157815 8738 chr6 26556843 26556843 1 + G A rs80287740 26556845 + 26556825 26556865 41 GGTTCGAGCCCCACGTTGGGCGCTCTGGTTTTCAATCCTAA GGTTCGAGCCCCACGTTGAGCGCTCTGGTTTTCAATCCTAA < 41bp 1 0.166038590241522 1 0.067291259765625 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556845 chr6:26556843 . . 0 19 hm5C_associated_SNPs_5881 0 0 1 0 0 unknown 1 0.500231643554756 1 0.999536712890488 hm5C_site_8738 DeepMRMD:1;iRNA_m5C:0.999536712890488 8739 chr6 26556845 26556845 1 + C A rs143390864 26556829 + 26556809 26556849 41 TAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTC TAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGAGCTC < 41bp 1 0.454554998613641 1 0.474408030509949 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556829 chr6:26556845 . . 0 37 hm5C_associated_SNPs_5882 0 0 1 0 0 unknown 1 0.50023164392101 1 0.999536712157981 hm5C_site_8739 DeepMRMD:1;iRNA_m5C:0.999536712157981 8740 chr6 26556845 26556845 1 + C A rs143390864 26556833 + 26556813 26556853 41 CTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTCTGGT CTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGAGCTCTGGT < 41bp 1 0.339403736650523 1 0.150196433067322 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556833 chr6:26556845 . . 0 33 hm5C_associated_SNPs_5883 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_8740 DeepMRMD:1;iRNA_m5C:0.999536712157816 8741 chr6 26556845 26556845 1 + C A rs143390864 26556834 + 26556814 26556854 41 TCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTCTGGTT TCAGGGTCGTGGGTTCGAGCCCCACGTTGGGAGCTCTGGTT < 41bp 1 0.145048130180062 1 0.138485640287399 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556834 chr6:26556845 . . 0 32 hm5C_associated_SNPs_5884 0 0 1 0 0 unknown 1 0.50023164392184 1 0.999536712156319 hm5C_site_8741 DeepMRMD:1;iRNA_m5C:0.999536712156319 8742 chr6 26556845 26556845 1 + C A rs143390864 26556835 + 26556815 26556855 41 CAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTCTGGTTT CAGGGTCGTGGGTTCGAGCCCCACGTTGGGAGCTCTGGTTT < 41bp 1 0.386901595119322 1 0.1355100274086 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556835 chr6:26556845 . . 0 31 hm5C_associated_SNPs_5885 0 0 1 0 0 unknown 1 0.500231643921078 1 0.999536712157844 hm5C_site_8742 DeepMRMD:1;iRNA_m5C:0.999536712157844 8743 chr6 26556845 26556845 1 + C A rs143390864 26556836 + 26556816 26556856 41 AGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCTCTGGTTTT AGGGTCGTGGGTTCGAGCCCCACGTTGGGAGCTCTGGTTTT < 41bp 1 0.473017905676908 1 0.510483860969543 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HMGN4;LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26556836 chr6:26556845 . . 0 30 hm5C_associated_SNPs_5886 0 0 1 0 0 unknown 1 0.500231643921092 0.979032278060914 0.999536712157815 hm5C_site_8743 DeepMRMD:0.979032278060914;iRNA_m5C:0.999536712157815 8744 chr6 26569127 26569127 1 + C T rs192209980 26569110 + 26569090 26569130 41 CGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGTTGGCTGT CGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGTTGGTTGT < 41bp 1 0.571870660390565 1 0.537103414535522 experiment 0.85625867921887 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569110 chr6:26569127 . . 0 38 hm5C_associated_SNPs_5887 0 0 1 0 0 unknown 1 0.500231643921147 0.925793170928956 0.999536712157705 hm5C_site_8744 DeepMRMD:0.925793170928956;iRNA_m5C:0.999536712157705 8745 chr6 26569127 26569127 1 + C T rs192209980 26569117 + 26569097 26569137 41 TCAGTTGGTAGAGCGGAGGACTGTAGTTGGCTGTGTCCTTA TCAGTTGGTAGAGCGGAGGACTGTAGTTGGTTGTGTCCTTA < 41bp 1 0.470051470423148 1 0.112220138311386 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569117 chr6:26569127 . . 0 31 hm5C_associated_SNPs_5888 0 0 1 0 0 unknown 1 0.500231641838347 1 0.999536716323306 hm5C_site_8745 DeepMRMD:1;iRNA_m5C:0.999536716323306 8746 chr6 26569127 26569127 1 + C T rs192209980 26569133 + 26569113 26569153 41 AGGACTGTAGTTGGCTGTGTCCTTAGACATCCTTAGGTCGC AGGACTGTAGTTGGTTGTGTCCTTAGACATCCTTAGGTCGC < 41bp 1 0.0955827579530838 1 0.0974368453025818 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569133 chr6:26569127 . . 0 15 hm5C_associated_SNPs_5889 0 0 1 0 0 unknown 1 0.500231643921095 1 0.999536712157811 hm5C_site_8746 DeepMRMD:1;iRNA_m5C:0.999536712157811 8747 chr6 26569127 26569127 1 + C T rs192209980 26569134 + 26569114 26569154 41 GGACTGTAGTTGGCTGTGTCCTTAGACATCCTTAGGTCGCT GGACTGTAGTTGGTTGTGTCCTTAGACATCCTTAGGTCGCT < 41bp 1 0.178932816558363 1 0.183841317892075 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569134 chr6:26569127 . . 0 14 hm5C_associated_SNPs_5890 0 0 1 0 0 unknown 1 0.500231642137217 1 0.999536715725566 hm5C_site_8747 DeepMRMD:1;iRNA_m5C:0.999536715725566 8748 chr6 26569127 26569127 1 + C T rs192209980 26569140 + 26569120 26569160 41 TAGTTGGCTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCG TAGTTGGTTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCG < 41bp 1 0.107680054940153 1 0.247524857521057 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569140 chr6:26569127 . . 0 8 hm5C_associated_SNPs_5891 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8748 DeepMRMD:1;iRNA_m5C:0.999536712157815 8749 chr6 26569127 26569127 1 + C T rs192209980 26569143 + 26569123 26569163 41 TTGGCTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCGAAT TTGGTTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCGAAT < 41bp 1 0.0737094381018723 1 0.0343105792999268 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569143 chr6:26569127 . . 0 5 hm5C_associated_SNPs_5892 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8749 DeepMRMD:1;iRNA_m5C:0.999536712157815 8750 chr6 26569127 26569127 1 + C T rs192209980 26569144 + 26569124 26569164 41 TGGCTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCGAATC TGGTTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCGAATC < 41bp 1 0.164558709427458 1 0.0963135659694672 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569144 chr6:26569127 . . 0 4 hm5C_associated_SNPs_5893 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157811 hm5C_site_8750 DeepMRMD:1;iRNA_m5C:0.999536712157811 8751 chr6 26569129 26569129 1 + G A rs183916234 26569110 + 26569090 26569130 41 CGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGTTGGCTGT CGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGTTGGCTAT < 41bp 1 0.640429462896875 1 0.712877511978149 experiment 0.719141074206249 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569110 chr6:26569129 . . 0 40 hm5C_associated_SNPs_5894 0 0 1 0 0 unknown 1 0.50023164406628 0.574244976043702 0.999536711867441 hm5C_site_8751 DeepMRMD:0.574244976043702;iRNA_m5C:0.999536711867441 8752 chr6 26569129 26569129 1 + G A rs183916234 26569117 + 26569097 26569137 41 TCAGTTGGTAGAGCGGAGGACTGTAGTTGGCTGTGTCCTTA TCAGTTGGTAGAGCGGAGGACTGTAGTTGGCTATGTCCTTA < 41bp 1 0.541372796188199 1 0.116809248924255 experiment 0.917254407623602 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569117 chr6:26569129 . . 0 33 hm5C_associated_SNPs_5895 0 0 1 0 0 unknown 1 0.500231643856154 1 0.999536712287692 hm5C_site_8752 DeepMRMD:1;iRNA_m5C:0.999536712287692 8753 chr6 26569129 26569129 1 + G A rs183916234 26569127 + 26569107 26569147 41 GAGCGGAGGACTGTAGTTGGCTGTGTCCTTAGACATCCTTA GAGCGGAGGACTGTAGTTGGCTATGTCCTTAGACATCCTTA < 41bp 1 0.404950053242592 1 0.194549202919006 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569127 chr6:26569129 . . 0 23 hm5C_associated_SNPs_5896 0 0 1 0 0 unknown 1 0.500231643779783 1 0.999536712440434 hm5C_site_8753 DeepMRMD:1;iRNA_m5C:0.999536712440434 8754 chr6 26569129 26569129 1 + G A rs183916234 26569133 + 26569113 26569153 41 AGGACTGTAGTTGGCTGTGTCCTTAGACATCCTTAGGTCGC AGGACTGTAGTTGGCTATGTCCTTAGACATCCTTAGGTCGC < 41bp 1 0.120840606234436 1 0.157186061143875 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569133 chr6:26569129 . . 0 17 hm5C_associated_SNPs_5897 0 0 1 0 0 unknown 1 0.500231643922816 1 0.999536712154368 hm5C_site_8754 DeepMRMD:1;iRNA_m5C:0.999536712154368 8755 chr6 26569129 26569129 1 + G A rs183916234 26569134 + 26569114 26569154 41 GGACTGTAGTTGGCTGTGTCCTTAGACATCCTTAGGTCGCT GGACTGTAGTTGGCTATGTCCTTAGACATCCTTAGGTCGCT < 41bp 1 0.179899889925505 1 0.246869891881943 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569134 chr6:26569129 . . 0 16 hm5C_associated_SNPs_5898 0 0 1 0 0 unknown 1 0.50023164384753 1 0.999536712304939 hm5C_site_8755 DeepMRMD:1;iRNA_m5C:0.999536712304939 8756 chr6 26569129 26569129 1 + G A rs183916234 26569140 + 26569120 26569160 41 TAGTTGGCTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCG TAGTTGGCTATGTCCTTAGACATCCTTAGGTCGCTGGTTCG < 41bp 1 0.0866291081622687 1 0.0646917521953583 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569140 chr6:26569129 . . 0 10 hm5C_associated_SNPs_5899 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_8756 DeepMRMD:1;iRNA_m5C:0.999536712157814 8757 chr6 26569129 26569129 1 + G A rs183916234 26569143 + 26569123 26569163 41 TTGGCTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCGAAT TTGGCTATGTCCTTAGACATCCTTAGGTCGCTGGTTCGAAT < 41bp 1 0.0915326545657628 1 0.0350175499916077 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569143 chr6:26569129 . . 0 7 hm5C_associated_SNPs_5900 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8757 DeepMRMD:1;iRNA_m5C:0.999536712157815 8758 chr6 26569129 26569129 1 + G A rs183916234 26569144 + 26569124 26569164 41 TGGCTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCGAATC TGGCTATGTCCTTAGACATCCTTAGGTCGCTGGTTCGAATC < 41bp 1 0.164105184370861 1 0.0749166309833527 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569144 chr6:26569129 . . 0 6 hm5C_associated_SNPs_5901 0 0 1 0 0 unknown 1 0.500231643921522 1 0.999536712156956 hm5C_site_8758 DeepMRMD:1;iRNA_m5C:0.999536712156956 8759 chr6 26569134 26569134 1 + C T rs111927231 26569117 + 26569097 26569137 41 TCAGTTGGTAGAGCGGAGGACTGTAGTTGGCTGTGTCCTTA TCAGTTGGTAGAGCGGAGGACTGTAGTTGGCTGTGTCTTTA < 41bp 1 0.488724153872008 1 0.0948300659656525 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569117 chr6:26569134 . . 0 38 hm5C_associated_SNPs_5902 0 0 1 0 0 unknown 1 0.500231643279136 1 0.999536713441728 hm5C_site_8759 DeepMRMD:1;iRNA_m5C:0.999536713441728 8760 chr6 26569134 26569134 1 + C T rs111927231 26569127 + 26569107 26569147 41 GAGCGGAGGACTGTAGTTGGCTGTGTCCTTAGACATCCTTA GAGCGGAGGACTGTAGTTGGCTGTGTCTTTAGACATCCTTA < 41bp 1 0.524225443324225 1 0.143575012683868 experiment 0.95154911335155 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569127 chr6:26569134 . . 0 28 hm5C_associated_SNPs_5903 0 0 1 0 0 unknown 1 0.500231640600732 1 0.999536718798536 hm5C_site_8760 DeepMRMD:1;iRNA_m5C:0.999536718798536 8761 chr6 26569134 26569134 1 + C T rs111927231 26569133 + 26569113 26569153 41 AGGACTGTAGTTGGCTGTGTCCTTAGACATCCTTAGGTCGC AGGACTGTAGTTGGCTGTGTCTTTAGACATCCTTAGGTCGC < 41bp 1 0.225377806222637 1 0.524603545665741 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569133 chr6:26569134 . . 0 22 hm5C_associated_SNPs_5904 0 0 1 0 0 unknown 1 0.50023164393484 0.950792908668518 0.99953671213032 hm5C_site_8761 DeepMRMD:0.950792908668518;iRNA_m5C:0.99953671213032 8762 chr6 26569134 26569134 1 + C T rs111927231 26569140 + 26569120 26569160 41 TAGTTGGCTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCG TAGTTGGCTGTGTCTTTAGACATCCTTAGGTCGCTGGTTCG < 41bp 1 0.0928684496356173 1 0.129297941923141 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569140 chr6:26569134 . . 0 15 hm5C_associated_SNPs_5905 0 0 1 0 0 unknown 1 0.500231643921111 1 0.999536712157778 hm5C_site_8762 DeepMRMD:1;iRNA_m5C:0.999536712157778 8763 chr6 26569134 26569134 1 + C T rs111927231 26569143 + 26569123 26569163 41 TTGGCTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCGAAT TTGGCTGTGTCTTTAGACATCCTTAGGTCGCTGGTTCGAAT < 41bp 1 0.0676817285013669 1 0.0263505876064301 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569143 chr6:26569134 . . 0 12 hm5C_associated_SNPs_5906 0 0 1 0 0 unknown 1 0.500231722779289 1 0.999536554441422 hm5C_site_8763 DeepMRMD:1;iRNA_m5C:0.999536554441422 8764 chr6 26569134 26569134 1 + C T rs111927231 26569144 + 26569124 26569164 41 TGGCTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCGAATC TGGCTGTGTCTTTAGACATCCTTAGGTCGCTGGTTCGAATC < 41bp 1 0.162615487225417 1 0.159689784049988 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569144 chr6:26569134 . . 0 11 hm5C_associated_SNPs_5907 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_8764 DeepMRMD:1;iRNA_m5C:0.999536712157815 8765 chr6 26569134 26569134 1 + C T rs111927231 26569151 + 26569131 26569171 41 GTCCTTAGACATCCTTAGGTCGCTGGTTCGAATCCGGCTCG GTCTTTAGACATCCTTAGGTCGCTGGTTCGAATCCGGCTCG < 41bp 1 0.47404670295751 1 0.229632437229156 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569151 chr6:26569134 . . 0 4 hm5C_associated_SNPs_5908 0 0 1 0 0 unknown 1 0.500232230638108 1 0.999535538723784 hm5C_site_8765 DeepMRMD:1;iRNA_m5C:0.999535538723784 8766 chr6 26569134 26569134 1 + C T rs111927231 26569153 + 26569133 26569173 41 CCTTAGACATCCTTAGGTCGCTGGTTCGAATCCGGCTCGAA CTTTAGACATCCTTAGGTCGCTGGTTCGAATCCGGCTCGAA < 41bp 1 0.541685028493321 1 0.102314233779907 experiment 0.916629943013357 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569153 chr6:26569134 . . 0 2 hm5C_associated_SNPs_5909 0 0 1 0 0 unknown 1 0.500231477515054 1 0.999537044969893 hm5C_site_8766 DeepMRMD:1;iRNA_m5C:0.999537044969893 8767 chr6 26569135 26569135 1 + T A rs36162392 26569117 + 26569097 26569137 41 TCAGTTGGTAGAGCGGAGGACTGTAGTTGGCTGTGTCCTTA TCAGTTGGTAGAGCGGAGGACTGTAGTTGGCTGTGTCCATA < 41bp 1 0.492160792694358 1 0.0649234354496002 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569117 chr6:26569135 . . 0 39 hm5C_associated_SNPs_5910 0 1 1 0 0 unknown 1 0.500231628803399 1 0.999536742393203 hm5C_site_8767 DeepMRMD:1;iRNA_m5C:0.999536742393203 8768 chr6 26569135 26569135 1 + T A rs36162392 26569127 + 26569107 26569147 41 GAGCGGAGGACTGTAGTTGGCTGTGTCCTTAGACATCCTTA GAGCGGAGGACTGTAGTTGGCTGTGTCCATAGACATCCTTA < 41bp 1 0.563797397634792 1 0.118205606937408 experiment 0.872405204730416 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569127 chr6:26569135 . . 0 29 hm5C_associated_SNPs_5911 0 1 1 0 0 unknown 1 0.500231634695047 1 0.999536730609907 hm5C_site_8768 DeepMRMD:1;iRNA_m5C:0.999536730609907 8769 chr6 26569135 26569135 1 + T A rs36162392 26569133 + 26569113 26569153 41 AGGACTGTAGTTGGCTGTGTCCTTAGACATCCTTAGGTCGC AGGACTGTAGTTGGCTGTGTCCATAGACATCCTTAGGTCGC < 41bp 1 0.211951230263362 1 0.434670567512512 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569133 chr6:26569135 . . 0 23 hm5C_associated_SNPs_5912 0 1 1 0 0 unknown 1 0.500231643921326 1 0.999536712157347 hm5C_site_8769 DeepMRMD:1;iRNA_m5C:0.999536712157347 8770 chr6 26569135 26569135 1 + T A rs36162392 26569134 + 26569114 26569154 41 GGACTGTAGTTGGCTGTGTCCTTAGACATCCTTAGGTCGCT GGACTGTAGTTGGCTGTGTCCATAGACATCCTTAGGTCGCT < 41bp 1 0.224778557548125 1 0.662037014961243 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569134 chr6:26569135 . . 0 22 hm5C_associated_SNPs_5913 0 1 1 0 0 unknown 1 0.500231643969378 0.675925970077514 0.999536712061244 hm5C_site_8770 DeepMRMD:0.675925970077514;iRNA_m5C:0.999536712061244 8771 chr6 26569135 26569135 1 + T A rs36162392 26569140 + 26569120 26569160 41 TAGTTGGCTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCG TAGTTGGCTGTGTCCATAGACATCCTTAGGTCGCTGGTTCG < 41bp 1 0.0999930158357937 1 0.120133459568024 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569140 chr6:26569135 . . 0 16 hm5C_associated_SNPs_5914 0 1 1 0 0 unknown 1 0.500231643921095 1 0.99953671215781 hm5C_site_8771 DeepMRMD:1;iRNA_m5C:0.99953671215781 8772 chr6 26569135 26569135 1 + T A rs36162392 26569143 + 26569123 26569163 41 TTGGCTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCGAAT TTGGCTGTGTCCATAGACATCCTTAGGTCGCTGGTTCGAAT < 41bp 1 0.0730541969135848 1 0.0254406929016113 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569143 chr6:26569135 . . 0 13 hm5C_associated_SNPs_5915 0 1 1 0 0 unknown 1 0.500231643914411 1 0.999536712171178 hm5C_site_8772 DeepMRMD:1;iRNA_m5C:0.999536712171178 8773 chr6 26569135 26569135 1 + T A rs36162392 26569144 + 26569124 26569164 41 TGGCTGTGTCCTTAGACATCCTTAGGTCGCTGGTTCGAATC TGGCTGTGTCCATAGACATCCTTAGGTCGCTGGTTCGAATC < 41bp 1 0.172367018212074 1 0.119005501270294 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569144 chr6:26569135 . . 0 12 hm5C_associated_SNPs_5916 0 1 1 0 0 unknown 1 0.500231643923371 1 0.999536712153258 hm5C_site_8773 DeepMRMD:1;iRNA_m5C:0.999536712153258 8774 chr6 26569135 26569135 1 + T A rs36162392 26569151 + 26569131 26569171 41 GTCCTTAGACATCCTTAGGTCGCTGGTTCGAATCCGGCTCG GTCCATAGACATCCTTAGGTCGCTGGTTCGAATCCGGCTCG < 41bp 1 0.525071678407358 1 0.190785765647888 experiment 0.949856643185284 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569151 chr6:26569135 . . 0 5 hm5C_associated_SNPs_5917 0 1 1 0 0 unknown 1 0.500231643926247 1 0.999536712147505 hm5C_site_8774 DeepMRMD:1;iRNA_m5C:0.999536712147505 8775 chr6 26569135 26569135 1 + T A rs36162392 26569153 + 26569133 26569173 41 CCTTAGACATCCTTAGGTCGCTGGTTCGAATCCGGCTCGAA CCATAGACATCCTTAGGTCGCTGGTTCGAATCCGGCTCGAA < 41bp 1 0.506971993036733 1 0.0782561600208282 experiment 0.986056013926534 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26569153 chr6:26569135 . . 0 3 hm5C_associated_SNPs_5918 0 1 1 0 0 unknown 1 0.500231638343592 1 0.999536723312816 hm5C_site_8775 DeepMRMD:1;iRNA_m5C:0.999536723312816 8776 chr6 26575805 26575805 1 + T A rs535861485 26575808 + 26575788 26575828 41 GCTAGGGGTCCTTTCGATAGCTCAGTTGGTAGAGCGGAGGA GCTAGGGGTCCTTTCGAAAGCTCAGTTGGTAGAGCGGAGGA < 41bp 1 0.616021972031439 1 0.505720496177673 experiment 0.767956055937123 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26575808 chr6:26575805 . . 0 18 hm5C_associated_SNPs_5919 0 0 1 0 0 unknown 1 0.500231643921092 0.988559007644654 0.999536712157815 hm5C_site_8776 DeepMRMD:0.988559007644654;iRNA_m5C:0.999536712157815 8777 chr6 26575805 26575805 1 + T A rs535861485 26575822 + 26575802 26575842 41 CGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGGTTCATTA CGAAAGCTCAGTTGGTAGAGCGGAGGACTGTAGGTTCATTA < 41bp 1 0.556342185343984 1 0.506564259529114 experiment 0.887315629312032 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26575822 chr6:26575805 . . 0 4 hm5C_associated_SNPs_5920 0 0 1 0 0 unknown 1 0.500231623196866 0.986871480941772 0.999536753606268 hm5C_site_8777 DeepMRMD:0.986871480941772;iRNA_m5C:0.999536753606268 8778 chr6 26575823 26575823 1 + G A rs72844477 26575808 + 26575788 26575828 41 GCTAGGGGTCCTTTCGATAGCTCAGTTGGTAGAGCGGAGGA GCTAGGGGTCCTTTCGATAGCTCAGTTGGTAGAGCAGAGGA < 41bp 1 0.597911844109214 1 0.404089570045471 experiment 0.804176311781571 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26575808 chr6:26575823 . . 0 36 hm5C_associated_SNPs_5921 0 0 1 0 0 unknown 1 0.500231643918171 1 0.999536712163658 hm5C_site_8778 DeepMRMD:1;iRNA_m5C:0.999536712163658 8779 chr6 26575823 26575823 1 + G A rs72844477 26575822 + 26575802 26575842 41 CGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGGTTCATTA CGATAGCTCAGTTGGTAGAGCAGAGGACTGTAGGTTCATTA < 41bp 1 0.506400843568587 1 0.41766569018364 experiment 0.987198312862826 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26575822 chr6:26575823 . . 0 22 hm5C_associated_SNPs_5922 0 0 1 0 0 unknown 1 0.500232256643467 1 0.999535486713067 hm5C_site_8779 DeepMRMD:1;iRNA_m5C:0.999535486713067 8780 chr6 26575823 26575823 1 + G A rs72844477 26575829 + 26575809 26575849 41 TCAGTTGGTAGAGCGGAGGACTGTAGGTTCATTAAACTAAG TCAGTTGGTAGAGCAGAGGACTGTAGGTTCATTAAACTAAG < 41bp 1 0.374501702970938 1 0.204728990793228 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26575829 chr6:26575823 . . 0 15 hm5C_associated_SNPs_5923 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8780 DeepMRMD:1;iRNA_m5C:0.999536712157815 8781 chr6 26575851 26575851 1 + C T rs544695712 26575845 + 26575825 26575865 41 AGGACTGTAGGTTCATTAAACTAAGGCATCCTTAGGTCGCT AGGACTGTAGGTTCATTAAACTAAGGTATCCTTAGGTCGCT < 41bp 1 0.4663841701426 1 0.248264610767365 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26575845 chr6:26575851 . . 0 27 hm5C_associated_SNPs_5924 0 0 1 0 0 unknown 1 0.500231643566684 1 0.999536712866631 hm5C_site_8781 DeepMRMD:1;iRNA_m5C:0.999536712866631 8782 chr6 26575851 26575851 1 + C T rs544695712 26575855 + 26575835 26575875 41 GTTCATTAAACTAAGGCATCCTTAGGTCGCTGGTTCGAATC GTTCATTAAACTAAGGTATCCTTAGGTCGCTGGTTCGAATC < 41bp 1 0.231303536455367 1 0.0521279871463776 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26575855 chr6:26575851 . . 0 17 hm5C_associated_SNPs_5925 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8782 DeepMRMD:1;iRNA_m5C:0.999536712157815 8783 chr6 26575851 26575851 1 + C T rs544695712 26575862 + 26575842 26575882 41 AAACTAAGGCATCCTTAGGTCGCTGGTTCGAATCCGGCTCG AAACTAAGGTATCCTTAGGTCGCTGGTTCGAATCCGGCTCG < 41bp 1 0.578657403983022 1 0.516395211219788 experiment 0.842685192033955 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26575862 chr6:26575851 . . 0 10 hm5C_associated_SNPs_5926 0 0 1 0 0 unknown 1 0.500702682786629 0.967209577560424 0.998594634426741 hm5C_site_8783 DeepMRMD:0.967209577560424;iRNA_m5C:0.998594634426741 8784 chr6 26577344 26577344 1 + C T rs569721137 26577342 + 26577322 26577362 41 CGTTCCGTGTCCTTCGATAGCTCAGTTGGTAGAGCGGAGGA CGTTCCGTGTCCTTCGATAGCTTAGTTGGTAGAGCGGAGGA < 41bp 1 0.416581299593106 1 0.223793089389801 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577342 chr6:26577344 . . 0 23 hm5C_associated_SNPs_5927 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8784 DeepMRMD:1;iRNA_m5C:0.999536712157815 8785 chr6 26577344 26577344 1 + C T rs569721137 26577356 + 26577336 26577376 41 CGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGGCTCATTA CGATAGCTTAGTTGGTAGAGCGGAGGACTGTAGGCTCATTA < 41bp 1 0.578734917203363 1 0.659112453460693 experiment 0.842530165593275 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577356 chr6:26577344 . . 0 9 hm5C_associated_SNPs_5928 0 0 1 0 0 unknown 1 0.50023158605245 0.681775093078614 0.999536827895101 hm5C_site_8785 DeepMRMD:0.681775093078614;iRNA_m5C:0.999536827895101 8786 chr6 26577344 26577344 1 + C T rs569721137 26577363 + 26577343 26577383 41 TCAGTTGGTAGAGCGGAGGACTGTAGGCTCATTAAGCAAGG TTAGTTGGTAGAGCGGAGGACTGTAGGCTCATTAAGCAAGG < 41bp 1 0.459023131863316 1 0.16535821557045 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577363 chr6:26577344 . . 0 2 hm5C_associated_SNPs_5929 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_8786 DeepMRMD:1;iRNA_m5C:0.999536712157816 8787 chr6 26577369 26577369 1 + G A rs553782580 26577356 + 26577336 26577376 41 CGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGGCTCATTA CGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGACTCATTA < 41bp 1 0.568126135699714 1 0.743006467819214 experiment 0.863747728600572 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577356 chr6:26577369 . . 0 34 hm5C_associated_SNPs_5930 0 0 1 0 0 unknown 1 0.500231623174258 0.513987064361572 0.999536753651485 hm5C_site_8787 DeepMRMD:0.513987064361572;iRNA_m5C:0.999536753651485 8788 chr6 26577369 26577369 1 + G A rs553782580 26577363 + 26577343 26577383 41 TCAGTTGGTAGAGCGGAGGACTGTAGGCTCATTAAGCAAGG TCAGTTGGTAGAGCGGAGGACTGTAGACTCATTAAGCAAGG < 41bp 1 0.490456857422852 1 0.301230788230896 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577363 chr6:26577369 . . 0 27 hm5C_associated_SNPs_5931 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_8788 DeepMRMD:1;iRNA_m5C:0.999536712157816 8789 chr6 26577369 26577369 1 + G A rs553782580 26577370 + 26577350 26577390 41 GTAGAGCGGAGGACTGTAGGCTCATTAAGCAAGGTATCCTT GTAGAGCGGAGGACTGTAGACTCATTAAGCAAGGTATCCTT < 41bp 1 0.467135208373084 1 0.0606573522090912 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577370 chr6:26577369 . . 0 20 hm5C_associated_SNPs_5932 0 0 1 0 0 unknown 1 0.500231643911268 1 0.999536712177464 hm5C_site_8789 DeepMRMD:1;iRNA_m5C:0.999536712177464 8790 chr6 26577369 26577369 1 + G A rs553782580 26577372 + 26577352 26577392 41 AGAGCGGAGGACTGTAGGCTCATTAAGCAAGGTATCCTTAG AGAGCGGAGGACTGTAGACTCATTAAGCAAGGTATCCTTAG < 41bp 1 0.419343210528832 1 0.0782718360424042 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577372 chr6:26577369 . . 0 18 hm5C_associated_SNPs_5933 0 0 1 0 0 unknown 1 0.500231643883058 1 0.999536712233884 hm5C_site_8790 DeepMRMD:1;iRNA_m5C:0.999536712233884 8791 chr6 26577369 26577369 1 + G A rs553782580 26577388 + 26577368 26577408 41 GGCTCATTAAGCAAGGTATCCTTAGGTCGCTGGTTCGAATC GACTCATTAAGCAAGGTATCCTTAGGTCGCTGGTTCGAATC < 41bp 1 0.270153264435744 1 0.0356870293617249 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577388 chr6:26577369 . . 0 2 hm5C_associated_SNPs_5935 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8791 DeepMRMD:1;iRNA_m5C:0.999536712157815 8792 chr6 26577370 26577370 1 + C T rs12663894 26577356 + 26577336 26577376 41 CGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGGCTCATTA CGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGGTTCATTA < 41bp 1 0.583241055448519 1 0.576026916503906 experiment 0.833517889102961 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577356 chr6:26577370 . . 0 35 hm5C_associated_SNPs_5936 0 0 1 0 0 unknown 1 0.500231623281211 0.847946166992188 0.999536753437577 hm5C_site_8792 DeepMRMD:0.847946166992188;iRNA_m5C:0.999536753437577 8793 chr6 26577370 26577370 1 + C T rs12663894 26577363 + 26577343 26577383 41 TCAGTTGGTAGAGCGGAGGACTGTAGGCTCATTAAGCAAGG TCAGTTGGTAGAGCGGAGGACTGTAGGTTCATTAAGCAAGG < 41bp 1 0.448104908576843 1 0.301484942436218 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577363 chr6:26577370 . . 0 28 hm5C_associated_SNPs_5937 0 0 1 0 0 unknown 1 0.500231643920991 1 0.999536712158017 hm5C_site_8793 DeepMRMD:1;iRNA_m5C:0.999536712158017 8794 chr6 26577370 26577370 1 + C T rs12663894 26577372 + 26577352 26577392 41 AGAGCGGAGGACTGTAGGCTCATTAAGCAAGGTATCCTTAG AGAGCGGAGGACTGTAGGTTCATTAAGCAAGGTATCCTTAG < 41bp 1 0.330808142221112 1 0.0319391489028931 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577372 chr6:26577370 . . 0 19 hm5C_associated_SNPs_5938 0 0 1 0 0 unknown 1 0.500231643921088 1 0.999536712157824 hm5C_site_8794 DeepMRMD:1;iRNA_m5C:0.999536712157824 8795 chr6 26577370 26577370 1 + C T rs12663894 26577388 + 26577368 26577408 41 GGCTCATTAAGCAAGGTATCCTTAGGTCGCTGGTTCGAATC GGTTCATTAAGCAAGGTATCCTTAGGTCGCTGGTTCGAATC < 41bp 1 0.344714082704603 1 0.0365504324436188 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577388 chr6:26577370 . . 0 3 hm5C_associated_SNPs_5940 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8795 DeepMRMD:1;iRNA_m5C:0.999536712157815 8796 chr6 26577390 26577390 1 + T G rs562463752 26577370 + 26577350 26577390 41 GTAGAGCGGAGGACTGTAGGCTCATTAAGCAAGGTATCCTT GTAGAGCGGAGGACTGTAGGCTCATTAAGCAAGGTATCCTG < 41bp 1 0.494984599978336 1 0.12628561258316 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577370 chr6:26577390 . . 0 41 hm5C_associated_SNPs_5941 0 0 1 0 0 unknown 1 0.500231643521625 1 0.99953671295675 hm5C_site_8796 DeepMRMD:1;iRNA_m5C:0.99953671295675 8797 chr6 26577390 26577390 1 + T G rs562463752 26577372 + 26577352 26577392 41 AGAGCGGAGGACTGTAGGCTCATTAAGCAAGGTATCCTTAG AGAGCGGAGGACTGTAGGCTCATTAAGCAAGGTATCCTGAG < 41bp 1 0.318905489205561 1 0.0343699157238007 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577372 chr6:26577390 . . 0 39 hm5C_associated_SNPs_5942 0 0 1 0 0 unknown 1 0.500231643919187 1 0.999536712161627 hm5C_site_8797 DeepMRMD:1;iRNA_m5C:0.999536712161627 8798 chr6 26577390 26577390 1 + T G rs562463752 26577388 + 26577368 26577408 41 GGCTCATTAAGCAAGGTATCCTTAGGTCGCTGGTTCGAATC GGCTCATTAAGCAAGGTATCCTGAGGTCGCTGGTTCGAATC < 41bp 1 0.644709284712677 1 0.16397950053215 experiment 0.710581430574647 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577388 chr6:26577390 . . 0 23 hm5C_associated_SNPs_5944 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8798 DeepMRMD:1;iRNA_m5C:0.999536712157815 8799 chr6 26577390 26577390 1 + T G rs562463752 26577395 + 26577375 26577415 41 TAAGCAAGGTATCCTTAGGTCGCTGGTTCGAATCCGGCTCG TAAGCAAGGTATCCTGAGGTCGCTGGTTCGAATCCGGCTCG < 41bp 1 0.663200643087322 1 0.44661745429039 experiment 0.673598713825355 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577395 chr6:26577390 . . 0 16 hm5C_associated_SNPs_5945 0 0 1 0 0 unknown 1 0.500231653324057 1 0.999536693351886 hm5C_site_8799 DeepMRMD:1;iRNA_m5C:0.999536693351886 8800 chr6 26577390 26577390 1 + T G rs562463752 26577397 + 26577377 26577417 41 AGCAAGGTATCCTTAGGTCGCTGGTTCGAATCCGGCTCGGA AGCAAGGTATCCTGAGGTCGCTGGTTCGAATCCGGCTCGGA < 41bp 1 0.578593275450067 1 0.172627538442612 experiment 0.842813449099866 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577397 chr6:26577390 . . 0 14 hm5C_associated_SNPs_5946 0 0 1 0 0 unknown 1 0.500231643889826 1 0.999536712220347 hm5C_site_8800 DeepMRMD:1;iRNA_m5C:0.999536712220347 8801 chr6 26577401 26577401 1 + T C rs76864766 26577388 + 26577368 26577408 41 GGCTCATTAAGCAAGGTATCCTTAGGTCGCTGGTTCGAATC GGCTCATTAAGCAAGGTATCCTTAGGTCGCTGGCTCGAATC < 41bp 1 0.310265161386685 1 0.0226036012172699 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577388 chr6:26577401 . . 0 34 hm5C_associated_SNPs_5947 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8801 DeepMRMD:1;iRNA_m5C:0.999536712157815 8802 chr6 26577401 26577401 1 + T C rs76864766 26577395 + 26577375 26577415 41 TAAGCAAGGTATCCTTAGGTCGCTGGTTCGAATCCGGCTCG TAAGCAAGGTATCCTTAGGTCGCTGGCTCGAATCCGGCTCG < 41bp 1 0.573186515899945 1 0.446374297142029 experiment 0.853626968200109 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577395 chr6:26577401 . . 0 27 hm5C_associated_SNPs_5948 0 0 1 0 0 unknown 1 0.500231751154286 1 0.999536497691428 hm5C_site_8802 DeepMRMD:1;iRNA_m5C:0.999536497691428 8803 chr6 26577401 26577401 1 + T C rs76864766 26577397 + 26577377 26577417 41 AGCAAGGTATCCTTAGGTCGCTGGTTCGAATCCGGCTCGGA AGCAAGGTATCCTTAGGTCGCTGGCTCGAATCCGGCTCGGA < 41bp 1 0.440633564071692 1 0.185923248529434 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26577397 chr6:26577401 . . 0 25 hm5C_associated_SNPs_5949 0 0 1 0 0 unknown 1 0.500231643922221 1 0.999536712155559 hm5C_site_8803 DeepMRMD:1;iRNA_m5C:0.999536712155559 8804 chr6 26595117 26595117 1 + C A rs140030468 26595103 + 26595083 26595123 41 AAAACGAGGGTAATGACATCCTTCGATAGCTCAGCTGGTAG AAAACGAGGGTAATGACATCCTTCGATAGCTCAGATGGTAG < 41bp 1 0.253937135743985 1 0.549496829509735 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595103 chr6:26595117 . . 0 35 hm5C_associated_SNPs_5950 0 0 1 0 0 unknown 1 0.500231643947446 0.90100634098053 0.999536712105108 hm5C_site_8804 DeepMRMD:0.90100634098053;iRNA_m5C:0.999536712105108 8805 chr6 26595117 26595117 1 + C A rs140030468 26595106 + 26595086 26595126 41 ACGAGGGTAATGACATCCTTCGATAGCTCAGCTGGTAGAGC ACGAGGGTAATGACATCCTTCGATAGCTCAGATGGTAGAGC < 41bp 1 0.303358392702558 1 0.363350510597229 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595106 chr6:26595117 . . 0 32 hm5C_associated_SNPs_5951 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8805 DeepMRMD:1;iRNA_m5C:0.999536712157815 8806 chr6 26595117 26595117 1 + C A rs140030468 26595112 + 26595092 26595132 41 GTAATGACATCCTTCGATAGCTCAGCTGGTAGAGCGGAGGA GTAATGACATCCTTCGATAGCTCAGATGGTAGAGCGGAGGA < 41bp 1 0.561438705966546 1 0.274462550878525 experiment 0.877122588066908 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595112 chr6:26595117 . . 0 26 hm5C_associated_SNPs_5952 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8806 DeepMRMD:1;iRNA_m5C:0.999536712157815 8807 chr6 26595117 26595117 1 + C A rs140030468 26595114 + 26595094 26595134 41 AATGACATCCTTCGATAGCTCAGCTGGTAGAGCGGAGGACT AATGACATCCTTCGATAGCTCAGATGGTAGAGCGGAGGACT < 41bp 1 0.413610832046018 1 0.607386469841003 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595114 chr6:26595117 . . 0 24 hm5C_associated_SNPs_5953 0 0 1 0 0 unknown 1 0.500231643919934 0.785227060317994 0.999536712160132 hm5C_site_8807 DeepMRMD:0.785227060317994;iRNA_m5C:0.999536712160132 8808 chr6 26595117 26595117 1 + C A rs140030468 26595126 + 26595106 26595146 41 CGATAGCTCAGCTGGTAGAGCGGAGGACTGTAGGGGTTTGA CGATAGCTCAGATGGTAGAGCGGAGGACTGTAGGGGTTTGA < 41bp 1 0.551403465751413 1 0.577411472797394 experiment 0.897193068497174 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595126 chr6:26595117 . . 0 12 hm5C_associated_SNPs_5954 0 0 1 0 0 unknown 1 0.50023164367547 0.845177054405212 0.99953671264906 hm5C_site_8808 DeepMRMD:0.845177054405212;iRNA_m5C:0.99953671264906 8809 chr6 26595117 26595117 1 + C A rs140030468 26595133 + 26595113 26595153 41 TCAGCTGGTAGAGCGGAGGACTGTAGGGGTTTGAATGTGGT TCAGATGGTAGAGCGGAGGACTGTAGGGGTTTGAATGTGGT < 41bp 1 0.417186606268013 1 0.222931087017059 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595133 chr6:26595117 . . 0 5 hm5C_associated_SNPs_5955 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_8809 DeepMRMD:1;iRNA_m5C:0.999536712157815 8810 chr6 26595156 26595156 1 + T G rs190912797 26595154 + 26595134 26595174 41 TGTAGGGGTTTGAATGTGGTCATCCTTAGGTCGCTGGTTCG TGTAGGGGTTTGAATGTGGTCAGCCTTAGGTCGCTGGTTCG < 41bp 1 0.49838318287366 1 0.265543639659882 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595154 chr6:26595156 . . 0 23 hm5C_associated_SNPs_5956 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8810 DeepMRMD:1;iRNA_m5C:0.999536712157815 8811 chr6 26595156 26595156 1 + T G rs190912797 26595158 + 26595138 26595178 41 GGGGTTTGAATGTGGTCATCCTTAGGTCGCTGGTTCGAATC GGGGTTTGAATGTGGTCAGCCTTAGGTCGCTGGTTCGAATC < 41bp 1 0.275102426702366 1 0.12240132689476 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595158 chr6:26595156 . . 0 19 hm5C_associated_SNPs_5957 0 0 1 0 0 unknown 1 0.500231628371555 1 0.99953674325689 hm5C_site_8811 DeepMRMD:1;iRNA_m5C:0.99953674325689 8812 chr6 26595156 26595156 1 + T G rs190912797 26595165 + 26595145 26595185 41 GAATGTGGTCATCCTTAGGTCGCTGGTTCGAATCCGGCTCG GAATGTGGTCAGCCTTAGGTCGCTGGTTCGAATCCGGCTCG < 41bp 1 0.612379432006574 1 0.347657352685928 experiment 0.775241135986852 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595165 chr6:26595156 . . 0 12 hm5C_associated_SNPs_5958 0 0 1 0 0 unknown 1 0.500231643926228 1 0.999536712147544 hm5C_site_8812 DeepMRMD:1;iRNA_m5C:0.999536712147544 8813 chr6 26595156 26595156 1 + T G rs190912797 26595167 + 26595147 26595187 41 ATGTGGTCATCCTTAGGTCGCTGGTTCGAATCCGGCTCGGA ATGTGGTCAGCCTTAGGTCGCTGGTTCGAATCCGGCTCGGA < 41bp 1 0.516289620839907 1 0.0517227947711945 experiment 0.967420758320186 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595167 chr6:26595156 . . 0 10 hm5C_associated_SNPs_5959 0 0 1 0 0 unknown 1 0.500231643937777 1 0.999536712124446 hm5C_site_8813 DeepMRMD:1;iRNA_m5C:0.999536712124446 8814 chr6 26595156 26595156 1 + T G rs190912797 26595173 + 26595153 26595193 41 TCATCCTTAGGTCGCTGGTTCGAATCCGGCTCGGAGGAGTT TCAGCCTTAGGTCGCTGGTTCGAATCCGGCTCGGAGGAGTT < 41bp 1 0.208475261992819 1 0.194116294384003 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595173 chr6:26595156 . . 0 4 hm5C_associated_SNPs_5960 0 0 1 0 0 unknown 1 0.500231643921081 1 0.999536712157837 hm5C_site_8814 DeepMRMD:1;iRNA_m5C:0.999536712157837 8815 chr6 26595157 26595157 1 + C G rs143540658 26595154 + 26595134 26595174 41 TGTAGGGGTTTGAATGTGGTCATCCTTAGGTCGCTGGTTCG TGTAGGGGTTTGAATGTGGTCATGCTTAGGTCGCTGGTTCG < 41bp 1 0.36167351404052 1 0.402230083942413 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595154 chr6:26595157 . . 0 24 hm5C_associated_SNPs_5961 0 0 1 0 0 unknown 1 0.500231643918792 1 0.999536712162415 hm5C_site_8815 DeepMRMD:1;iRNA_m5C:0.999536712162415 8816 chr6 26595157 26595157 1 + C G rs143540658 26595158 + 26595138 26595178 41 GGGGTTTGAATGTGGTCATCCTTAGGTCGCTGGTTCGAATC GGGGTTTGAATGTGGTCATGCTTAGGTCGCTGGTTCGAATC < 41bp 1 0.293807779772972 1 0.0541102588176727 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595158 chr6:26595157 . . 0 20 hm5C_associated_SNPs_5962 0 0 1 0 0 unknown 1 0.500231600354625 1 0.999536799290751 hm5C_site_8816 DeepMRMD:1;iRNA_m5C:0.999536799290751 8817 chr6 26595157 26595157 1 + C G rs143540658 26595165 + 26595145 26595185 41 GAATGTGGTCATCCTTAGGTCGCTGGTTCGAATCCGGCTCG GAATGTGGTCATGCTTAGGTCGCTGGTTCGAATCCGGCTCG < 41bp 1 0.590754896858636 1 0.311345160007477 experiment 0.818490206282729 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595165 chr6:26595157 . . 0 13 hm5C_associated_SNPs_5963 0 0 1 0 0 unknown 1 0.500231643873115 1 0.99953671225377 hm5C_site_8817 DeepMRMD:1;iRNA_m5C:0.99953671225377 8818 chr6 26595157 26595157 1 + C G rs143540658 26595167 + 26595147 26595187 41 ATGTGGTCATCCTTAGGTCGCTGGTTCGAATCCGGCTCGGA ATGTGGTCATGCTTAGGTCGCTGGTTCGAATCCGGCTCGGA < 41bp 1 0.51822338923049 1 0.0660079717636108 experiment 0.963553221539019 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595167 chr6:26595157 . . 0 11 hm5C_associated_SNPs_5964 0 0 1 0 0 unknown 1 0.500231643929004 1 0.999536712141991 hm5C_site_8818 DeepMRMD:1;iRNA_m5C:0.999536712141991 8819 chr6 26595157 26595157 1 + C G rs143540658 26595173 + 26595153 26595193 41 TCATCCTTAGGTCGCTGGTTCGAATCCGGCTCGGAGGAGTT TCATGCTTAGGTCGCTGGTTCGAATCCGGCTCGGAGGAGTT < 41bp 1 0.224169409708513 1 0.183657050132751 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595173 chr6:26595157 . . 0 5 hm5C_associated_SNPs_5965 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_8819 DeepMRMD:1;iRNA_m5C:0.999536712157815 8820 chr6 26595168 26595168 1 + T C rs9461276 26595154 + 26595134 26595174 41 TGTAGGGGTTTGAATGTGGTCATCCTTAGGTCGCTGGTTCG TGTAGGGGTTTGAATGTGGTCATCCTTAGGTCGCCGGTTCG < 41bp 1 0.219530677562002 1 0.134768545627594 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595154 chr6:26595168 . . 0 35 hm5C_associated_SNPs_5966 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8820 DeepMRMD:1;iRNA_m5C:0.999536712157815 8821 chr6 26595168 26595168 1 + T C rs9461276 26595158 + 26595138 26595178 41 GGGGTTTGAATGTGGTCATCCTTAGGTCGCTGGTTCGAATC GGGGTTTGAATGTGGTCATCCTTAGGTCGCCGGTTCGAATC < 41bp 1 0.347479232687981 1 0.0753412544727325 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595158 chr6:26595168 . . 0 31 hm5C_associated_SNPs_5967 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8821 DeepMRMD:1;iRNA_m5C:0.999536712157815 8822 chr6 26595168 26595168 1 + T C rs9461276 26595167 + 26595147 26595187 41 ATGTGGTCATCCTTAGGTCGCTGGTTCGAATCCGGCTCGGA ATGTGGTCATCCTTAGGTCGCCGGTTCGAATCCGGCTCGGA < 41bp 1 0.315393670166045 1 0.064696729183197 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595167 chr6:26595168 . . 0 22 hm5C_associated_SNPs_5969 0 0 1 0 0 unknown 1 0.500231647380009 1 0.999536705239982 hm5C_site_8822 DeepMRMD:1;iRNA_m5C:0.999536705239982 8823 chr6 26595168 26595168 1 + T C rs9461276 26595173 + 26595153 26595193 41 TCATCCTTAGGTCGCTGGTTCGAATCCGGCTCGGAGGAGTT TCATCCTTAGGTCGCCGGTTCGAATCCGGCTCGGAGGAGTT < 41bp 1 0.190534186623124 1 0.116377949714661 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595173 chr6:26595168 . . 0 16 hm5C_associated_SNPs_5970 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8823 DeepMRMD:1;iRNA_m5C:0.999536712157815 8824 chr6 26595168 26595168 1 + T C rs9461276 26595179 + 26595159 26595199 41 TTAGGTCGCTGGTTCGAATCCGGCTCGGAGGAGTTCCATTT TTAGGTCGCCGGTTCGAATCCGGCTCGGAGGAGTTCCATTT < 41bp 1 0.539113063214328 1 0.563086986541748 experiment 0.921773873571344 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC105374988;ABT1 ENSG00000182952;ENSG00000146109 intergenic Human other chr6:26595179 chr6:26595168 . . 0 10 hm5C_associated_SNPs_5971 0 0 1 0 0 unknown 1 0.500231643784322 0.873826026916504 0.999536712431357 hm5C_site_8824 DeepMRMD:0.873826026916504;iRNA_m5C:0.999536712431357 8825 chr6 26597189 26597189 1 + C G rs116818425 26597193 + 26597173 26597213 41 GGCACTTTACGGCCGTCGTGCCGCTCGTGTCAGTCAACATG GGCACTTTACGGCCGTGGTGCCGCTCGTGTCAGTCAACATG < 41bp 1 0.215982659011327 1 0.0529029965400696 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABT1 ENSG00000146109 UTR5 Human protein_coding chr6:26597193 chr6:26597189 . . 0 17 hm5C_associated_SNPs_5972 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_8825 DeepMRMD:1;iRNA_m5C:0.999536712157814 8826 chr6 26597189 26597189 1 + C G rs116818425 26597203 + 26597183 26597223 41 GGCCGTCGTGCCGCTCGTGTCAGTCAACATGGAGGCAGAGG GGCCGTGGTGCCGCTCGTGTCAGTCAACATGGAGGCAGAGG < 41bp 1 0.398818377244413 1 0.387940585613251 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABT1 ENSG00000146109 UTR5 Human protein_coding chr6:26597203 chr6:26597189 . . 0 7 hm5C_associated_SNPs_5973 0 0 1 0 0 Ribosome 1 0.500231649263091 1 0.999536701473818 hm5C_site_8826 DeepMRMD:1;iRNA_m5C:0.999536701473818 8827 chr6 26701713 26701713 1 + C T rs367740197 26701722 + 26701702 26701742 41 TCAACAGCAAGCCCTCTTAGCGCAGCTGGCAGCGCGTCAGT TCAACAGCAAGTCCTCTTAGCGCAGCTGGCAGCGCGTCAGT < 41bp 1 0.574626048642974 1 0.543473541736603 experiment 0.850747902714052 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701722 chr6:26701713 . . 0 12 hm5C_associated_SNPs_5974 0 0 1 0 0 unknown 1 0.500231643914022 0.913052916526794 0.999536712171955 hm5C_site_8827 DeepMRMD:0.913052916526794;iRNA_m5C:0.999536712171955 8828 chr6 26701713 26701713 1 + C T rs367740197 26701724 + 26701704 26701744 41 AACAGCAAGCCCTCTTAGCGCAGCTGGCAGCGCGTCAGTCT AACAGCAAGTCCTCTTAGCGCAGCTGGCAGCGCGTCAGTCT < 41bp 1 0.580681090117035 1 0.56800365447998 experiment 0.838637819765929 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701724 chr6:26701713 . . 0 10 hm5C_associated_SNPs_5975 0 0 1 0 0 unknown 1 0.500231558768669 0.86399269104004 0.999536882462662 hm5C_site_8828 DeepMRMD:0.86399269104004;iRNA_m5C:0.999536882462662 8829 chr6 26701713 26701713 1 + C T rs367740197 26701727 + 26701707 26701747 41 AGCAAGCCCTCTTAGCGCAGCTGGCAGCGCGTCAGTCTCAT AGCAAGTCCTCTTAGCGCAGCTGGCAGCGCGTCAGTCTCAT < 41bp 1 0.278470920157661 1 0.401172906160355 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701727 chr6:26701713 . . 0 7 hm5C_associated_SNPs_5976 0 0 1 0 0 unknown 1 0.500231643951608 1 0.999536712096784 hm5C_site_8829 DeepMRMD:1;iRNA_m5C:0.999536712096784 8830 chr6 26701713 26701713 1 + C T rs367740197 26701731 + 26701711 26701751 41 AGCCCTCTTAGCGCAGCTGGCAGCGCGTCAGTCTCATAATC AGTCCTCTTAGCGCAGCTGGCAGCGCGTCAGTCTCATAATC < 41bp 1 0.547295275749272 1 0.320651829242706 experiment 0.905409448501456 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701731 chr6:26701713 . . 0 3 hm5C_associated_SNPs_5977 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8830 DeepMRMD:1;iRNA_m5C:0.999536712157815 8831 chr6 26701714 26701714 1 + C T rs564464886 26701713 + 26701693 26701733 41 TGCCCGAGCTCAACAGCAAGCCCTCTTAGCGCAGCTGGCAG TGCCCGAGCTCAACAGCAAGCTCTCTTAGCGCAGCTGGCAG < 41bp 1 0.205306600531896 1 0.102251976728439 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701713 chr6:26701714 . . 0 22 hm5C_associated_SNPs_5978 0 0 1 0 0 unknown 1 0.500231643046834 1 0.999536713906332 hm5C_site_8831 DeepMRMD:1;iRNA_m5C:0.999536713906332 8832 chr6 26701714 26701714 1 + C T rs564464886 26701722 + 26701702 26701742 41 TCAACAGCAAGCCCTCTTAGCGCAGCTGGCAGCGCGTCAGT TCAACAGCAAGCTCTCTTAGCGCAGCTGGCAGCGCGTCAGT < 41bp 1 0.584125591908802 1 0.316904515028 experiment 0.831748816182396 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701722 chr6:26701714 . . 0 13 hm5C_associated_SNPs_5979 0 0 1 0 0 unknown 1 0.500231643918846 1 0.999536712162309 hm5C_site_8832 DeepMRMD:1;iRNA_m5C:0.999536712162309 8833 chr6 26701714 26701714 1 + C T rs564464886 26701724 + 26701704 26701744 41 AACAGCAAGCCCTCTTAGCGCAGCTGGCAGCGCGTCAGTCT AACAGCAAGCTCTCTTAGCGCAGCTGGCAGCGCGTCAGTCT < 41bp 1 0.543871474932415 1 0.303204417228699 experiment 0.912257050135171 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701724 chr6:26701714 . . 0 11 hm5C_associated_SNPs_5980 0 0 1 0 0 unknown 1 0.500231577938352 1 0.999536844123296 hm5C_site_8833 DeepMRMD:1;iRNA_m5C:0.999536844123296 8834 chr6 26701714 26701714 1 + C T rs564464886 26701727 + 26701707 26701747 41 AGCAAGCCCTCTTAGCGCAGCTGGCAGCGCGTCAGTCTCAT AGCAAGCTCTCTTAGCGCAGCTGGCAGCGCGTCAGTCTCAT < 41bp 1 0.318782162084305 1 0.281933307647705 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701727 chr6:26701714 . . 0 8 hm5C_associated_SNPs_5981 0 0 1 0 0 unknown 1 0.500229642489132 1 0.999540715021737 hm5C_site_8834 DeepMRMD:1;iRNA_m5C:0.999540715021737 8835 chr6 26701714 26701714 1 + C T rs564464886 26701731 + 26701711 26701751 41 AGCCCTCTTAGCGCAGCTGGCAGCGCGTCAGTCTCATAATC AGCTCTCTTAGCGCAGCTGGCAGCGCGTCAGTCTCATAATC < 41bp 1 0.480638187095694 1 0.350288420915604 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701731 chr6:26701714 . . 0 4 hm5C_associated_SNPs_5982 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8835 DeepMRMD:1;iRNA_m5C:0.999536712157815 8836 chr6 26701714 26701714 1 + C T rs564464886 26701734 + 26701714 26701754 41 CCTCTTAGCGCAGCTGGCAGCGCGTCAGTCTCATAATCTGA TCTCTTAGCGCAGCTGGCAGCGCGTCAGTCTCATAATCTGA < 41bp 1 0.504140690450825 1 0.417886286973953 experiment 0.99171861909835 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701734 chr6:26701714 . . 0 1 hm5C_associated_SNPs_5983 0 0 1 0 0 unknown 1 0.500230385794693 1 0.999539228410613 hm5C_site_8836 DeepMRMD:1;iRNA_m5C:0.999539228410613 8837 chr6 26701764 26701764 1 + G C rs568788393 26701745 + 26701725 26701765 41 AGCTGGCAGCGCGTCAGTCTCATAATCTGAAGGTCCTGAGT AGCTGGCAGCGCGTCAGTCTCATAATCTGAAGGTCCTGACT < 41bp 1 0.522399476165588 1 0.610693693161011 experiment 0.955201047668825 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701745 chr6:26701764 . . 0 40 hm5C_associated_SNPs_5984 0 0 1 0 0 unknown 1 0.500231643914881 0.778612613677978 0.999536712170238 hm5C_site_8837 DeepMRMD:0.778612613677978;iRNA_m5C:0.999536712170238 8838 chr6 26701764 26701764 1 + G C rs568788393 26701751 + 26701731 26701771 41 CAGCGCGTCAGTCTCATAATCTGAAGGTCCTGAGTTCAAGC CAGCGCGTCAGTCTCATAATCTGAAGGTCCTGACTTCAAGC < 41bp 1 0.683300662599533 1 0.404738217592239 experiment 0.633398674800933 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701751 chr6:26701764 . . 0 34 hm5C_associated_SNPs_5985 0 0 1 0 0 unknown 1 0.500231668235091 1 0.999536663529819 hm5C_site_8838 DeepMRMD:1;iRNA_m5C:0.999536663529819 8839 chr6 26701764 26701764 1 + G C rs568788393 26701759 + 26701739 26701779 41 CAGTCTCATAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGA CAGTCTCATAATCTGAAGGTCCTGACTTCAAGCCTCAGAGA < 41bp 1 0.20418928519172 1 0.040206253528595 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701759 chr6:26701764 . . 0 26 hm5C_associated_SNPs_5986 0 0 1 0 0 unknown 1 0.500231644059654 1 0.999536711880692 hm5C_site_8839 DeepMRMD:1;iRNA_m5C:0.999536711880692 8840 chr6 26701764 26701764 1 + G C rs568788393 26701760 + 26701740 26701780 41 AGTCTCATAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGAG AGTCTCATAATCTGAAGGTCCTGACTTCAAGCCTCAGAGAG < 41bp 1 0.260411294927046 1 0.086752325296402 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701760 chr6:26701764 . . 0 25 hm5C_associated_SNPs_5987 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_8840 DeepMRMD:1;iRNA_m5C:0.999536712157818 8841 chr6 26701764 26701764 1 + G C rs568788393 26701767 + 26701747 26701787 41 TAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCA TAATCTGAAGGTCCTGACTTCAAGCCTCAGAGAGGGCATCA < 41bp 1 0.37907566803002 1 0.117136359214783 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701767 chr6:26701764 . . 0 18 hm5C_associated_SNPs_5988 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8841 DeepMRMD:1;iRNA_m5C:0.999536712157815 8842 chr6 26701764 26701764 1 + G C rs568788393 26701771 + 26701751 26701791 41 CTGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTC CTGAAGGTCCTGACTTCAAGCCTCAGAGAGGGCATCACTTC < 41bp 1 0.238666383507427 1 0.0977004766464233 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701771 chr6:26701764 . . 0 14 hm5C_associated_SNPs_5989 0 0 1 0 0 unknown 1 0.500231643934536 1 0.999536712130929 hm5C_site_8842 DeepMRMD:1;iRNA_m5C:0.999536712130929 8843 chr6 26701764 26701764 1 + G C rs568788393 26701772 + 26701752 26701792 41 TGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTCT TGAAGGTCCTGACTTCAAGCCTCAGAGAGGGCATCACTTCT < 41bp 1 0.306471708690766 1 0.210283011198044 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701772 chr6:26701764 . . 0 13 hm5C_associated_SNPs_5990 0 0 1 0 0 unknown 1 0.500231643921046 1 0.999536712157909 hm5C_site_8843 DeepMRMD:1;iRNA_m5C:0.999536712157909 8844 chr6 26701764 26701764 1 + G C rs568788393 26701774 + 26701754 26701794 41 AAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTCTGC AAGGTCCTGACTTCAAGCCTCAGAGAGGGCATCACTTCTGC < 41bp 1 0.480710113852958 1 0.890538096427917 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701774 chr6:26701764 . . 0 11 hm5C_associated_SNPs_5991 0 0 1 0 0 unknown 1 0.50023164392109 0.218923807144166 0.99953671215782 hm5C_site_8844 DeepMRMD:0.218923807144166;iRNA_m5C:0.99953671215782 8845 chr6 26701772 26701772 1 + C T rs547971502 26701759 + 26701739 26701779 41 CAGTCTCATAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGA CAGTCTCATAATCTGAAGGTCCTGAGTTCAAGCTTCAGAGA < 41bp 1 0.263932204296183 1 0.0443944334983826 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701759 chr6:26701772 . . 0 34 hm5C_associated_SNPs_5992 0 0 1 0 0 unknown 1 0.500231666272059 1 0.999536667455882 hm5C_site_8845 DeepMRMD:1;iRNA_m5C:0.999536667455882 8846 chr6 26701772 26701772 1 + C T rs547971502 26701760 + 26701740 26701780 41 AGTCTCATAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGAG AGTCTCATAATCTGAAGGTCCTGAGTTCAAGCTTCAGAGAG < 41bp 1 0.550778962036508 1 0.11129903793335 experiment 0.898442075926984 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701760 chr6:26701772 . . 0 33 hm5C_associated_SNPs_5993 0 0 1 0 0 unknown 1 0.500231643720969 1 0.999536712558062 hm5C_site_8846 DeepMRMD:1;iRNA_m5C:0.999536712558062 8847 chr6 26701772 26701772 1 + C T rs547971502 26701767 + 26701747 26701787 41 TAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCA TAATCTGAAGGTCCTGAGTTCAAGCTTCAGAGAGGGCATCA < 41bp 1 0.442496655910686 1 0.0548515617847443 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701767 chr6:26701772 . . 0 26 hm5C_associated_SNPs_5994 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8847 DeepMRMD:1;iRNA_m5C:0.999536712157815 8848 chr6 26701772 26701772 1 + C T rs547971502 26701771 + 26701751 26701791 41 CTGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTC CTGAAGGTCCTGAGTTCAAGCTTCAGAGAGGGCATCACTTC < 41bp 1 0.480186182960634 1 0.267610728740692 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701771 chr6:26701772 . . 0 22 hm5C_associated_SNPs_5995 0 0 1 0 0 unknown 1 0.500231643943853 1 0.999536712112295 hm5C_site_8848 DeepMRMD:1;iRNA_m5C:0.999536712112295 8849 chr6 26701772 26701772 1 + C T rs547971502 26701774 + 26701754 26701794 41 AAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTCTGC AAGGTCCTGAGTTCAAGCTTCAGAGAGGGCATCACTTCTGC < 41bp 1 0.492452267622091 1 0.858412861824036 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701774 chr6:26701772 . . 0 19 hm5C_associated_SNPs_5996 0 0 1 0 0 unknown 1 0.500231644011465 0.283174276351928 0.999536711977071 hm5C_site_8849 DeepMRMD:0.283174276351928;iRNA_m5C:0.999536711977071 8850 chr6 26701773 26701773 1 + T A rs567960270 26701759 + 26701739 26701779 41 CAGTCTCATAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGA CAGTCTCATAATCTGAAGGTCCTGAGTTCAAGCCACAGAGA < 41bp 1 0.24320681189569 1 0.0959343910217285 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701759 chr6:26701773 . . 0 35 hm5C_associated_SNPs_5997 0 0 1 0 0 unknown 1 0.500231679289239 1 0.999536641421523 hm5C_site_8850 DeepMRMD:1;iRNA_m5C:0.999536641421523 8851 chr6 26701773 26701773 1 + T A rs567960270 26701760 + 26701740 26701780 41 AGTCTCATAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGAG AGTCTCATAATCTGAAGGTCCTGAGTTCAAGCCACAGAGAG < 41bp 1 0.530930499149391 1 0.326658368110657 experiment 0.938139001701219 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701760 chr6:26701773 . . 0 34 hm5C_associated_SNPs_5998 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8851 DeepMRMD:1;iRNA_m5C:0.999536712157815 8852 chr6 26701773 26701773 1 + T A rs567960270 26701767 + 26701747 26701787 41 TAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCA TAATCTGAAGGTCCTGAGTTCAAGCCACAGAGAGGGCATCA < 41bp 1 0.367698969108412 1 0.0558332502841949 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701767 chr6:26701773 . . 0 27 hm5C_associated_SNPs_5999 0 0 1 0 0 unknown 1 0.500231643918129 1 0.999536712163743 hm5C_site_8852 DeepMRMD:1;iRNA_m5C:0.999536712163743 8853 chr6 26701773 26701773 1 + T A rs567960270 26701771 + 26701751 26701791 41 CTGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTC CTGAAGGTCCTGAGTTCAAGCCACAGAGAGGGCATCACTTC < 41bp 1 0.463080128245906 1 0.28318452835083 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701771 chr6:26701773 . . 0 23 hm5C_associated_SNPs_6000 0 0 1 0 0 unknown 1 0.500231654554466 1 0.999536690891067 hm5C_site_8853 DeepMRMD:1;iRNA_m5C:0.999536690891067 8854 chr6 26701773 26701773 1 + T A rs567960270 26701772 + 26701752 26701792 41 TGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTCT TGAAGGTCCTGAGTTCAAGCCACAGAGAGGGCATCACTTCT < 41bp 1 0.376687339096676 1 0.261128753423691 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701772 chr6:26701773 . . 0 22 hm5C_associated_SNPs_6001 0 0 1 0 0 unknown 1 0.500231643704716 1 0.999536712590569 hm5C_site_8854 DeepMRMD:1;iRNA_m5C:0.999536712590569 8855 chr6 26701773 26701773 1 + T A rs567960270 26701774 + 26701754 26701794 41 AAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTCTGC AAGGTCCTGAGTTCAAGCCACAGAGAGGGCATCACTTCTGC < 41bp 1 0.455001565092307 1 0.728691220283508 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701774 chr6:26701773 . . 0 20 hm5C_associated_SNPs_6002 0 0 1 0 0 unknown 1 0.500231644106891 0.542617559432984 0.999536711786218 hm5C_site_8855 DeepMRMD:0.542617559432984;iRNA_m5C:0.999536711786218 8856 chr6 26701778 26701778 1 + G A rs553592532 26701759 + 26701739 26701779 41 CAGTCTCATAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGA CAGTCTCATAATCTGAAGGTCCTGAGTTCAAGCCTCAGAAA < 41bp 1 0.296327913002128 1 0.0543746650218964 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701759 chr6:26701778 . . 0 40 hm5C_associated_SNPs_6003 0 0 1 0 0 unknown 1 0.500231643896383 1 0.999536712207234 hm5C_site_8856 DeepMRMD:1;iRNA_m5C:0.999536712207234 8857 chr6 26701778 26701778 1 + G A rs553592532 26701760 + 26701740 26701780 41 AGTCTCATAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGAG AGTCTCATAATCTGAAGGTCCTGAGTTCAAGCCTCAGAAAG < 41bp 1 0.516982640390974 1 0.118834286928177 experiment 0.966034719218052 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701760 chr6:26701778 . . 0 39 hm5C_associated_SNPs_6004 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8857 DeepMRMD:1;iRNA_m5C:0.999536712157815 8858 chr6 26701778 26701778 1 + G A rs553592532 26701767 + 26701747 26701787 41 TAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCA TAATCTGAAGGTCCTGAGTTCAAGCCTCAGAAAGGGCATCA < 41bp 1 0.373790462894914 1 0.0683077275753021 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701767 chr6:26701778 . . 0 32 hm5C_associated_SNPs_6005 0 0 1 0 0 unknown 1 0.500231643914343 1 0.999536712171314 hm5C_site_8858 DeepMRMD:1;iRNA_m5C:0.999536712171314 8859 chr6 26701778 26701778 1 + G A rs553592532 26701771 + 26701751 26701791 41 CTGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTC CTGAAGGTCCTGAGTTCAAGCCTCAGAAAGGGCATCACTTC < 41bp 1 0.252301769073634 1 0.117829144001007 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701771 chr6:26701778 . . 0 28 hm5C_associated_SNPs_6006 0 0 1 0 0 unknown 1 0.500231655837206 1 0.999536688325589 hm5C_site_8859 DeepMRMD:1;iRNA_m5C:0.999536688325589 8860 chr6 26701778 26701778 1 + G A rs553592532 26701772 + 26701752 26701792 41 TGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTCT TGAAGGTCCTGAGTTCAAGCCTCAGAAAGGGCATCACTTCT < 41bp 1 0.343415668550976 1 0.150454133749008 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701772 chr6:26701778 . . 0 27 hm5C_associated_SNPs_6007 0 0 1 0 0 unknown 1 0.500231643922065 1 0.999536712155869 hm5C_site_8860 DeepMRMD:1;iRNA_m5C:0.999536712155869 8861 chr6 26701778 26701778 1 + G A rs553592532 26701774 + 26701754 26701794 41 AAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTCTGC AAGGTCCTGAGTTCAAGCCTCAGAAAGGGCATCACTTCTGC < 41bp 1 0.582340040115375 1 0.807771801948547 experiment 0.83531991976925 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701774 chr6:26701778 . . 0 25 hm5C_associated_SNPs_6008 0 0 1 0 0 unknown 1 0.500231645865267 0.384456396102906 0.999536708269467 hm5C_site_8861 DeepMRMD:0.384456396102906;iRNA_m5C:0.999536708269467 8862 chr6 26701783 26701783 1 + C A rs9295703 26701767 + 26701747 26701787 41 TAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCA TAATCTGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGAATCA < 41bp 1 0.361209717503027 1 0.0538369715213776 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701767 chr6:26701783 . . 0 37 hm5C_associated_SNPs_6009 0 0 1 0 0 unknown 1 0.50023164362734 1 0.999536712745321 hm5C_site_8862 DeepMRMD:1;iRNA_m5C:0.999536712745321 8863 chr6 26701783 26701783 1 + C A rs9295703 26701771 + 26701751 26701791 41 CTGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTC CTGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGAATCACTTC < 41bp 1 0.265251230638283 1 0.128501504659653 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701771 chr6:26701783 . . 0 33 hm5C_associated_SNPs_6010 0 0 1 0 0 unknown 1 0.499918101816163 1 1 hm5C_site_8863 DeepMRMD:1;iRNA_m5C:1 8864 chr6 26701783 26701783 1 + C A rs9295703 26701772 + 26701752 26701792 41 TGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTCT TGAAGGTCCTGAGTTCAAGCCTCAGAGAGGGAATCACTTCT < 41bp 1 0.342362327277388 1 0.29172295331955 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701772 chr6:26701783 . . 0 32 hm5C_associated_SNPs_6011 0 0 1 0 0 unknown 1 0.500231643898467 1 0.999536712203066 hm5C_site_8864 DeepMRMD:1;iRNA_m5C:0.999536712203066 8865 chr6 26701783 26701783 1 + C A rs9295703 26701774 + 26701754 26701794 41 AAGGTCCTGAGTTCAAGCCTCAGAGAGGGCATCACTTCTGC AAGGTCCTGAGTTCAAGCCTCAGAGAGGGAATCACTTCTGC < 41bp 1 0.487141072293604 1 0.918434679508209 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF322;GUSBP2 ENSG00000261584;ENSG00000241549 intergenic Human other chr6:26701774 chr6:26701783 . . 0 30 hm5C_associated_SNPs_6012 0 0 1 0 0 unknown 1 0.500231643920327 0.163130640983582 0.999536712159346 hm5C_site_8865 DeepMRMD:0.163130640983582;iRNA_m5C:0.999536712159346 8866 chr6 27059549 27059549 1 + G A rs546888167 27059532 + 27059512 27059552 41 TTTCTAAGTGGCTCGTTGGTCTAGGGGTATGATTCTCGCTT TTTCTAAGTGGCTCGTTGGTCTAGGGGTATGATTCTCACTT < 41bp 1 0.653683876384752 1 0.572397232055664 experiment 0.692632247230496 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27059532 chr6:27059549 . . 0 38 hm5C_associated_SNPs_6013 0 0 1 0 0 unknown 1 0.500231643869401 0.855205535888672 0.999536712261198 hm5C_site_8866 DeepMRMD:0.855205535888672;iRNA_m5C:0.999536712261198 8867 chr6 27059549 27059549 1 + G A rs546888167 27059546 + 27059526 27059566 41 GTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGTGAGAGGT GTTGGTCTAGGGGTATGATTCTCACTTCGGGTGTGAGAGGT < 41bp 1 0.389735558903382 1 0.601632475852966 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27059546 chr6:27059549 . . 0 24 hm5C_associated_SNPs_6014 0 0 1 0 0 unknown 1 0.50023164392114 0.796735048294068 0.999536712157719 hm5C_site_8867 DeepMRMD:0.796735048294068;iRNA_m5C:0.999536712157719 8868 chr6 27059549 27059549 1 + G A rs546888167 27059548 + 27059528 27059568 41 TGGTCTAGGGGTATGATTCTCGCTTCGGGTGTGAGAGGTCC TGGTCTAGGGGTATGATTCTCACTTCGGGTGTGAGAGGTCC < 41bp 1 0.263086913116263 1 0.271160989999771 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27059548 chr6:27059549 . . 0 22 hm5C_associated_SNPs_6015 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8868 DeepMRMD:1;iRNA_m5C:0.999536712157815 8869 chr6 27059549 27059549 1 + G A rs546888167 27059550 + 27059530 27059570 41 GTCTAGGGGTATGATTCTCGCTTCGGGTGTGAGAGGTCCCG GTCTAGGGGTATGATTCTCACTTCGGGTGTGAGAGGTCCCG < 41bp 1 0.389470392422173 1 0.127282053232193 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27059550 chr6:27059549 . . 0 20 hm5C_associated_SNPs_6016 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8869 DeepMRMD:1;iRNA_m5C:0.999536712157815 8870 chr6 27059568 27059568 1 + C G rs370604102 27059548 + 27059528 27059568 41 TGGTCTAGGGGTATGATTCTCGCTTCGGGTGTGAGAGGTCC TGGTCTAGGGGTATGATTCTCGCTTCGGGTGTGAGAGGTCG < 41bp 1 0.309553803016689 1 0.291202902793884 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27059548 chr6:27059568 . . 0 41 hm5C_associated_SNPs_6020 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8870 DeepMRMD:1;iRNA_m5C:0.999536712157815 8871 chr6 27059568 27059568 1 + C G rs370604102 27059550 + 27059530 27059570 41 GTCTAGGGGTATGATTCTCGCTTCGGGTGTGAGAGGTCCCG GTCTAGGGGTATGATTCTCGCTTCGGGTGTGAGAGGTCGCG < 41bp 1 0.335022769907961 1 0.065388560295105 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27059550 chr6:27059568 . . 0 39 hm5C_associated_SNPs_6021 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8871 DeepMRMD:1;iRNA_m5C:0.999536712157815 8872 chr6 27059568 27059568 1 + C G rs370604102 27059575 + 27059555 27059595 41 GGTGTGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCACT GGTGTGAGAGGTCGCGGGTTCAAATCCCGGACGAGCCCACT < 41bp 1 0.338793626280247 1 0.694043219089508 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27059575 chr6:27059568 . . 0 14 hm5C_associated_SNPs_6023 0 0 1 0 0 unknown 1 0.500246172200465 0.611913561820984 0.999507655599071 hm5C_site_8872 DeepMRMD:0.611913561820984;iRNA_m5C:0.999507655599071 8873 chr6 27059568 27059568 1 + C G rs370604102 27059580 + 27059560 27059600 41 GAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCACTTCATT GAGAGGTCGCGGGTTCAAATCCCGGACGAGCCCACTTCATT < 41bp 1 0.490880754425803 1 0.734526872634888 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27059580 chr6:27059568 . . 0 9 hm5C_associated_SNPs_6024 0 0 1 0 0 unknown 1 0.500231643921092 0.530946254730224 0.999536712157816 hm5C_site_8873 DeepMRMD:0.530946254730224;iRNA_m5C:0.999536712157816 8874 chr6 27059568 27059568 1 + C G rs370604102 27059582 + 27059562 27059602 41 GAGGTCCCGGGTTCAAATCCCGGACGAGCCCACTTCATTTT GAGGTCGCGGGTTCAAATCCCGGACGAGCCCACTTCATTTT < 41bp 1 0.431438800938116 1 0.413327813148499 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27059582 chr6:27059568 . . 0 7 hm5C_associated_SNPs_6026 0 0 1 0 0 unknown 1 0.500231643922153 1 0.999536712155695 hm5C_site_8874 DeepMRMD:1;iRNA_m5C:0.999536712155695 8875 chr6 27059568 27059568 1 + C G rs370604102 27059586 + 27059566 27059606 41 TCCCGGGTTCAAATCCCGGACGAGCCCACTTCATTTTCGCC TCGCGGGTTCAAATCCCGGACGAGCCCACTTCATTTTCGCC < 41bp 1 0.131945556382011 1 0.0842645764350891 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27059586 chr6:27059568 . . 0 3 hm5C_associated_SNPs_6027 0 0 1 0 0 unknown 1 0.500231645358475 1 0.99953670928305 hm5C_site_8875 DeepMRMD:1;iRNA_m5C:0.99953670928305 8876 chr6 27065095 27065095 1 + C T rs185394001 27065096 + 27065076 27065116 41 GGTTATCAAGACGAGGTGGCCGAGTGGTTAAGGCGATGGAC GGTTATCAAGACGAGGTGGTCGAGTGGTTAAGGCGATGGAC < 41bp 1 0.669910305032744 1 0.765702366828918 experiment 0.660179389934513 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27065096 chr6:27065095 . . 0 20 hm5C_associated_SNPs_6028 0 0 1 0 0 unknown 1 0.500231643913643 0.468595266342164 0.999536712172714 hm5C_site_8876 DeepMRMD:0.468595266342164;iRNA_m5C:0.999536712172714 8877 chr6 27065142 27065142 1 + G A rs562915878 27065137 + 27065117 27065157 41 TGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAATCCCA TGCTAATCCATTGTGCTCTGCACGCATGGGTTCGAATCCCA < 41bp 1 0.340297876442365 1 0.0191619694232941 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27065137 chr6:27065142 . . 0 26 hm5C_associated_SNPs_6029 0 0 1 0 0 unknown 1 0.500231676126065 1 0.99953664774787 hm5C_site_8877 DeepMRMD:1;iRNA_m5C:0.99953664774787 8878 chr6 27065142 27065142 1 + G A rs562915878 27065149 + 27065129 27065169 41 GTGCTCTGCACGCGTGGGTTCGAATCCCACCCTCGTCGGGG GTGCTCTGCACGCATGGGTTCGAATCCCACCCTCGTCGGGG < 41bp 1 0.214683054476612 1 0.0814368426799774 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27065149 chr6:27065142 . . 0 14 hm5C_associated_SNPs_6031 0 0 1 0 0 unknown 1 0.500231643906609 1 0.999536712186782 hm5C_site_8878 DeepMRMD:1;iRNA_m5C:0.999536712186782 8879 chr6 27065142 27065142 1 + G A rs562915878 27065154 + 27065134 27065174 41 CTGCACGCGTGGGTTCGAATCCCACCCTCGTCGGGGGAGGT CTGCACGCATGGGTTCGAATCCCACCCTCGTCGGGGGAGGT < 41bp 1 0.0687844948925469 1 0.0678858458995819 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27065154 chr6:27065142 . . 0 9 hm5C_associated_SNPs_6032 0 0 1 0 0 unknown 1 0.50026174778449 1 0.999476504431019 hm5C_site_8879 DeepMRMD:1;iRNA_m5C:0.999476504431019 8880 chr6 27065142 27065142 1 + G A rs562915878 27065155 + 27065135 27065175 41 TGCACGCGTGGGTTCGAATCCCACCCTCGTCGGGGGAGGTC TGCACGCATGGGTTCGAATCCCACCCTCGTCGGGGGAGGTC < 41bp 1 0.127020618883325 1 0.0687984228134155 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27065155 chr6:27065142 . . 0 8 hm5C_associated_SNPs_6033 0 0 1 0 0 unknown 1 0.500231643921077 1 0.999536712157846 hm5C_site_8880 DeepMRMD:1;iRNA_m5C:0.999536712157846 8881 chr6 27065142 27065142 1 + G A rs562915878 27065156 + 27065136 27065176 41 GCACGCGTGGGTTCGAATCCCACCCTCGTCGGGGGAGGTCT GCACGCATGGGTTCGAATCCCACCCTCGTCGGGGGAGGTCT < 41bp 1 0.435282127181572 1 0.0573811829090118 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27065156 chr6:27065142 . . 0 7 hm5C_associated_SNPs_6034 0 0 1 0 0 unknown 1 0.500231787661127 1 0.999536424677746 hm5C_site_8881 DeepMRMD:1;iRNA_m5C:0.999536424677746 8882 chr6 27065142 27065142 1 + G A rs562915878 27065158 + 27065138 27065178 41 ACGCGTGGGTTCGAATCCCACCCTCGTCGGGGGAGGTCTTT ACGCATGGGTTCGAATCCCACCCTCGTCGGGGGAGGTCTTT < 41bp 1 0.0907735445134792 1 0.0399582087993622 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27065158 chr6:27065142 . . 0 5 hm5C_associated_SNPs_6035 0 0 1 0 0 unknown 1 0.500231667597292 1 0.999536664805416 hm5C_site_8882 DeepMRMD:1;iRNA_m5C:0.999536664805416 8883 chr6 27065142 27065142 1 + G A rs562915878 27065159 + 27065139 27065179 41 CGCGTGGGTTCGAATCCCACCCTCGTCGGGGGAGGTCTTTT CGCATGGGTTCGAATCCCACCCTCGTCGGGGGAGGTCTTTT < 41bp 1 0.0825181266387513 1 0.045876532793045 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27065159 chr6:27065142 . . 0 4 hm5C_associated_SNPs_6036 0 0 1 0 0 unknown 1 0.500231643921137 1 0.999536712157726 hm5C_site_8883 DeepMRMD:1;iRNA_m5C:0.999536712157726 8884 chr6 27065142 27065142 1 + G A rs562915878 27065160 + 27065140 27065180 41 GCGTGGGTTCGAATCCCACCCTCGTCGGGGGAGGTCTTTTA GCATGGGTTCGAATCCCACCCTCGTCGGGGGAGGTCTTTTA < 41bp 1 0.496988968985655 1 0.348094522953033 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27065160 chr6:27065142 . . 0 3 hm5C_associated_SNPs_6037 0 0 1 0 0 unknown 1 0.500231643933331 1 0.999536712133338 hm5C_site_8884 DeepMRMD:1;iRNA_m5C:0.999536712133338 8885 chr6 27065142 27065142 1 + G A rs562915878 27065162 + 27065142 27065182 41 GTGGGTTCGAATCCCACCCTCGTCGGGGGAGGTCTTTTAAT ATGGGTTCGAATCCCACCCTCGTCGGGGGAGGTCTTTTAAT < 41bp 1 0.300385955902374 1 0.775740146636963 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00240;HIST1H2BJ ENSG00000219770;ENSG00000222800 intergenic Human other chr6:27065162 chr6:27065142 . . 0 1 hm5C_associated_SNPs_6038 0 0 1 0 0 unknown 1 0.500231643921092 0.448519706726074 0.999536712157815 hm5C_site_8885 DeepMRMD:0.448519706726074;iRNA_m5C:0.999536712157815 8886 chr6 27101054 27101054 1 + C T rs55867104 27101062 + 27101042 27101082 41 GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC GGAACTGGCGGGTAACGCGGCCCGCGACAACAAGAAGACCC < 41bp 1 0.338711031013904 1 0.357267677783966 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101062 chr6:27101054 synonymous SNV . 0 13 hm5C_associated_SNPs_6039 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8886 DeepMRMD:1;iRNA_m5C:0.999536712157815 8887 chr6 27101054 27101054 1 + C T rs55867104 27101063 + 27101043 27101083 41 GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG GAACTGGCGGGTAACGCGGCCCGCGACAACAAGAAGACCCG < 41bp 1 0.366647226835072 1 0.192930907011032 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101063 chr6:27101054 synonymous SNV . 0 12 hm5C_associated_SNPs_6040 0 0 1 0 0 Ribosome 1 0.500231639377538 1 0.999536721244924 hm5C_site_8887 DeepMRMD:1;iRNA_m5C:0.999536721244924 8888 chr6 27101057 27101057 1 + C T rs559397552 27101054 + 27101034 27101074 41 GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACAA GAGATCCTGGAACTGGCGGGCAATGCGGCCCGCGACAACAA < 41bp 1 0.355213113589159 1 0.382006227970123 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101054 chr6:27101057 synonymous SNV . 0 24 hm5C_associated_SNPs_6041 0 0 1 0 0 Ribosome 1 0.500231643921644 1 0.999536712156713 hm5C_site_8888 DeepMRMD:1;iRNA_m5C:0.999536712156713 8889 chr6 27101057 27101057 1 + C T rs559397552 27101062 + 27101042 27101082 41 GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC GGAACTGGCGGGCAATGCGGCCCGCGACAACAAGAAGACCC < 41bp 1 0.361418967040456 1 0.35314017534256 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101062 chr6:27101057 synonymous SNV . 0 16 hm5C_associated_SNPs_6042 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_8889 DeepMRMD:1;iRNA_m5C:0.999536712157815 8890 chr6 27101057 27101057 1 + C T rs559397552 27101063 + 27101043 27101083 41 GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG GAACTGGCGGGCAATGCGGCCCGCGACAACAAGAAGACCCG < 41bp 1 0.399581290970395 1 0.217267006635666 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101063 chr6:27101057 synonymous SNV . 0 15 hm5C_associated_SNPs_6043 0 0 1 0 0 Ribosome 1 0.500231643921032 1 0.999536712157936 hm5C_site_8890 DeepMRMD:1;iRNA_m5C:0.999536712157936 8891 chr6 27130075 27130075 1 + C T rs191548026 27130060 + 27130040 27130080 41 GCCCAACAGGGGCCCTGTGGCTTAGCTGGTCAAAGCGCCTG GCCCAACAGGGGCCCTGTGGCTTAGCTGGTCAAAGTGCCTG < 41bp 1 0.306814637428396 1 0.158339262008667 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000265565;ENSG00000174572 intergenic Human other chr6:27130060 chr6:27130075 . . 0 36 hm5C_associated_SNPs_6045 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_8891 DeepMRMD:1;iRNA_m5C:0.999536712157815 8892 chr6 27130075 27130075 1 + C T rs191548026 27130065 + 27130045 27130085 41 ACAGGGGCCCTGTGGCTTAGCTGGTCAAAGCGCCTGTCTAG ACAGGGGCCCTGTGGCTTAGCTGGTCAAAGTGCCTGTCTAG < 41bp 1 0.689068232947996 1 0.578143656253815 experiment 0.621863534104008 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000265565;ENSG00000174572 intergenic Human other chr6:27130065 chr6:27130075 . . 0 31 hm5C_associated_SNPs_6046 0 0 1 0 0 unknown 1 0.500265687081757 0.84371268749237 0.999468625836487 hm5C_site_8892 DeepMRMD:0.84371268749237;iRNA_m5C:0.999468625836487 8893 chr6 27130075 27130075 1 + C T rs191548026 27130070 + 27130050 27130090 41 GGCCCTGTGGCTTAGCTGGTCAAAGCGCCTGTCTAGTAAAC GGCCCTGTGGCTTAGCTGGTCAAAGTGCCTGTCTAGTAAAC < 41bp 1 0.356132591557044 1 0.169841438531876 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000265565;ENSG00000174572 intergenic Human other chr6:27130070 chr6:27130075 . . 0 26 hm5C_associated_SNPs_6047 0 0 1 0 0 unknown 1 0.500231646225005 1 0.99953670754999 hm5C_site_8893 DeepMRMD:1;iRNA_m5C:0.99953670754999 8894 chr6 27130075 27130075 1 + C T rs191548026 27130077 + 27130057 27130097 41 TGGCTTAGCTGGTCAAAGCGCCTGTCTAGTAAACAGGAGAT TGGCTTAGCTGGTCAAAGTGCCTGTCTAGTAAACAGGAGAT < 41bp 1 0.13037192821988 1 0.116976529359818 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000265565;ENSG00000174572 intergenic Human other chr6:27130077 chr6:27130075 . . 0 19 hm5C_associated_SNPs_6048 0 0 1 0 0 unknown 1 0.500231643921049 1 0.999536712157903 hm5C_site_8894 DeepMRMD:1;iRNA_m5C:0.999536712157903 8895 chr6 27130075 27130075 1 + C T rs191548026 27130078 + 27130058 27130098 41 GGCTTAGCTGGTCAAAGCGCCTGTCTAGTAAACAGGAGATC GGCTTAGCTGGTCAAAGTGCCTGTCTAGTAAACAGGAGATC < 41bp 1 0.137790726721899 1 0.0508718192577362 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000265565;ENSG00000174572 intergenic Human other chr6:27130078 chr6:27130075 . . 0 18 hm5C_associated_SNPs_6049 0 0 1 0 0 unknown 1 0.500229942233426 1 0.999540115533149 hm5C_site_8895 DeepMRMD:1;iRNA_m5C:0.999540115533149 8896 chr6 27130075 27130075 1 + C T rs191548026 27130082 + 27130062 27130102 41 TAGCTGGTCAAAGCGCCTGTCTAGTAAACAGGAGATCCTGG TAGCTGGTCAAAGTGCCTGTCTAGTAAACAGGAGATCCTGG < 41bp 1 0.378894160466221 1 0.228995859622955 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000265565;ENSG00000174572 intergenic Human other chr6:27130082 chr6:27130075 . . 0 14 hm5C_associated_SNPs_6050 0 0 1 0 0 unknown 1 0.50023164395226 1 0.99953671209548 hm5C_site_8896 DeepMRMD:1;iRNA_m5C:0.99953671209548 8897 chr6 27177636 27177636 1 + G A rs112747787 27177638 + 27177618 27177658 41 CATTTAGAGGGCTGTGATGGCCGAGTGGTTAAGGCGTTGGA CATTTAGAGGGCTGTGATAGCCGAGTGGTTAAGGCGTTGGA < 41bp 1 0.424304198696059 1 0.412337481975555 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000265565;ENSG00000174572 intergenic Human other chr6:27177638 chr6:27177636 . . 0 19 hm5C_associated_SNPs_6051 0 0 1 0 0 unknown 1 0.500231637975824 1 0.999536724048353 hm5C_site_8897 DeepMRMD:1;iRNA_m5C:0.999536724048353 8898 chr6 27183001 27183001 1 + T C rs560164807 27182986 + 27182966 27183006 41 ATGGATAACGCGTCTGACTACGGATCAGAAGATTCTAGGTT ATGGATAACGCGTCTGACTACGGATCAGAAGATTCCAGGTT < 41bp 1 0.44432431233838 1 0.424038201570511 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27182986 chr6:27183001 . . 0 36 hm5C_associated_SNPs_6053 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_8898 DeepMRMD:1;iRNA_m5C:0.999536712157816 8899 chr6 27183001 27183001 1 + T C rs560164807 27182991 + 27182971 27183011 41 TAACGCGTCTGACTACGGATCAGAAGATTCTAGGTTCGACT TAACGCGTCTGACTACGGATCAGAAGATTCCAGGTTCGACT < 41bp 1 0.606217808737998 1 0.330902516841888 experiment 0.787564382524004 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27182991 chr6:27183001 . . 0 31 hm5C_associated_SNPs_6054 0 0 1 0 0 unknown 1 0.500231952461899 1 0.999536095076203 hm5C_site_8899 DeepMRMD:1;iRNA_m5C:0.999536095076203 8900 chr6 27183001 27183001 1 + T C rs560164807 27183000 + 27182980 27183020 41 TGACTACGGATCAGAAGATTCTAGGTTCGACTCCTGGCTGG TGACTACGGATCAGAAGATTCCAGGTTCGACTCCTGGCTGG < 41bp 1 0.6379520874352 1 0.775086224079132 experiment 0.724095825129601 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27183000 chr6:27183001 . . 0 22 hm5C_associated_SNPs_6055 0 0 1 0 0 unknown 1 0.5002316439136 0.449827551841736 0.999536712172799 hm5C_site_8900 DeepMRMD:0.449827551841736;iRNA_m5C:0.999536712172799 8901 chr6 27183001 27183001 1 + T C rs560164807 27183007 + 27182987 27183027 41 GGATCAGAAGATTCTAGGTTCGACTCCTGGCTGGCTCGGGT GGATCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGGGT < 41bp 1 0.16615994390729 1 0.256738901138306 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27183007 chr6:27183001 . . 0 15 hm5C_associated_SNPs_6056 0 0 1 0 0 unknown 1 0.500231643906432 1 0.999536712187136 hm5C_site_8901 DeepMRMD:1;iRNA_m5C:0.999536712187136 8902 chr6 27183001 27183001 1 + T C rs560164807 27183010 + 27182990 27183030 41 TCAGAAGATTCTAGGTTCGACTCCTGGCTGGCTCGGGTGTT TCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGGGTGTT < 41bp 1 0.198391229087876 1 0.116011649370193 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27183010 chr6:27183001 . . 0 12 hm5C_associated_SNPs_6057 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_8902 DeepMRMD:1;iRNA_m5C:0.999536712157814 8903 chr6 27183001 27183001 1 + T C rs560164807 27183012 + 27182992 27183032 41 AGAAGATTCTAGGTTCGACTCCTGGCTGGCTCGGGTGTTAA AGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGGGTGTTAA < 41bp 1 0.142369192105403 1 0.117651104927063 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27183012 chr6:27183001 . . 0 10 hm5C_associated_SNPs_6058 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8903 DeepMRMD:1;iRNA_m5C:0.999536712157815 8904 chr6 27183001 27183001 1 + T C rs560164807 27183013 + 27182993 27183033 41 GAAGATTCTAGGTTCGACTCCTGGCTGGCTCGGGTGTTAAT GAAGATTCCAGGTTCGACTCCTGGCTGGCTCGGGTGTTAAT < 41bp 1 0.191200604452731 1 0.0423991084098816 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27183013 chr6:27183001 . . 0 9 hm5C_associated_SNPs_6059 0 0 1 0 0 unknown 1 0.500231255024886 1 0.999537489950228 hm5C_site_8904 DeepMRMD:1;iRNA_m5C:0.999537489950228 8905 chr6 27183001 27183001 1 + T C rs560164807 27183017 + 27182997 27183037 41 ATTCTAGGTTCGACTCCTGGCTGGCTCGGGTGTTAATCTTG ATTCCAGGTTCGACTCCTGGCTGGCTCGGGTGTTAATCTTG < 41bp 1 0.287967027806185 1 0.14986115694046 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27183017 chr6:27183001 . . 0 5 hm5C_associated_SNPs_6060 0 0 1 0 0 unknown 1 0.500232553008721 1 0.999534893982558 hm5C_site_8905 DeepMRMD:1;iRNA_m5C:0.999534893982558 8906 chr6 27183001 27183001 1 + T C rs560164807 27183021 + 27183001 27183041 41 TAGGTTCGACTCCTGGCTGGCTCGGGTGTTAATCTTGGCTT CAGGTTCGACTCCTGGCTGGCTCGGGTGTTAATCTTGGCTT < 41bp 1 0.510866372814612 1 0.516841351985931 experiment 0.978267254370776 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27183021 chr6:27183001 . . 0 1 hm5C_associated_SNPs_6061 0 0 1 0 0 unknown 1 0.500231643921092 0.966317296028138 0.999536712157815 hm5C_site_8906 DeepMRMD:0.966317296028138;iRNA_m5C:0.999536712157815 8907 chr6 27203308 27203308 1 + A G rs79513035 27203312 + 27203292 27203332 41 CCGTAGTGTAGTGGTTATCACGTTTGCCTAACACGCGAAAG CCGTAGTGTAGTGGTTGTCACGTTTGCCTAACACGCGAAAG < 41bp 1 0.117433582765078 1 0.113476783037186 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27203312 chr6:27203308 . . 0 17 hm5C_associated_SNPs_6062 0 0 1 0 0 unknown 1 0.500231643471218 1 0.999536713057564 hm5C_site_8907 DeepMRMD:1;iRNA_m5C:0.999536713057564 8908 chr6 27203308 27203308 1 + A G rs79513035 27203319 + 27203299 27203339 41 GTAGTGGTTATCACGTTTGCCTAACACGCGAAAGGTCCCCG GTAGTGGTTGTCACGTTTGCCTAACACGCGAAAGGTCCCCG < 41bp 1 0.172126742425228 1 0.471859216690063 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27203319 chr6:27203308 . . 0 10 hm5C_associated_SNPs_6063 0 0 1 0 0 unknown 1 0.500231643938816 1 0.999536712122368 hm5C_site_8908 DeepMRMD:1;iRNA_m5C:0.999536712122368 8909 chr6 27203319 27203319 1 + C A rs9468016 27203312 + 27203292 27203332 41 CCGTAGTGTAGTGGTTATCACGTTTGCCTAACACGCGAAAG CCGTAGTGTAGTGGTTATCACGTTTGCATAACACGCGAAAG < 41bp 1 0.136443851196675 1 0.147129118442535 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27203312 chr6:27203319 . . 0 28 hm5C_associated_SNPs_6064 0 0 1 0 0 unknown 1 0.50022908961027 1 0.99954182077946 hm5C_site_8909 DeepMRMD:1;iRNA_m5C:0.99954182077946 8910 chr6 27203332 27203332 1 + G A rs183802162 27203312 + 27203292 27203332 41 CCGTAGTGTAGTGGTTATCACGTTTGCCTAACACGCGAAAG CCGTAGTGTAGTGGTTATCACGTTTGCCTAACACGCGAAAA < 41bp 1 0.13466713965844 1 0.0986205339431763 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27203312 chr6:27203332 . . 0 41 hm5C_associated_SNPs_6065 0 0 1 0 0 unknown 1 0.500231392691685 1 0.999537214616631 hm5C_site_8910 DeepMRMD:1;iRNA_m5C:0.999537214616631 8911 chr6 27203332 27203332 1 + G A rs183802162 27203319 + 27203299 27203339 41 GTAGTGGTTATCACGTTTGCCTAACACGCGAAAGGTCCCCG GTAGTGGTTATCACGTTTGCCTAACACGCGAAAAGTCCCCG < 41bp 1 0.129694437774219 1 0.315549939870834 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27203319 chr6:27203332 . . 0 34 hm5C_associated_SNPs_6066 0 0 1 0 0 unknown 1 0.500204609864898 1 0.999590780270205 hm5C_site_8911 DeepMRMD:1;iRNA_m5C:0.999590780270205 Triglycerides 8912 chr6 27203335 27203335 1 + C A rs72843641 27203319 + 27203299 27203339 41 GTAGTGGTTATCACGTTTGCCTAACACGCGAAAGGTCCCCG GTAGTGGTTATCACGTTTGCCTAACACGCGAAAGGTACCCG < 41bp 1 0.131716251842401 1 0.290158957242966 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR3143;PRSS16 ENSG00000174572;ENSG00000112812 intergenic Human other chr6:27203319 chr6:27203335 . . 0 37 hm5C_associated_SNPs_6067 0 0 1 0 0 unknown 1 0.500231643872807 1 0.999536712254387 hm5C_site_8912 DeepMRMD:1;iRNA_m5C:0.999536712254387 8913 chr6 27258410 27258410 1 + C T rs72839448 27258409 + 27258389 27258429 41 CCAACGCAGCACACAGGTTTCCGTGGTGTAGTGGTTATCAC CCAACGCAGCACACAGGTTTCTGTGGTGTAGTGGTTATCAC < 41bp 1 0.495683992417427 1 0.14733412861824 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27258409 chr6:27258410 . . 0 22 hm5C_associated_SNPs_6068 0 0 1 0 0 unknown 1 0.500231643914259 1 0.999536712171482 hm5C_site_8913 DeepMRMD:1;iRNA_m5C:0.999536712171482 8914 chr6 27258410 27258410 1 + C T rs72839448 27258429 + 27258409 27258449 41 CCGTGGTGTAGTGGTTATCACATTCGCCTTACACGCGAAAG CTGTGGTGTAGTGGTTATCACATTCGCCTTACACGCGAAAG < 41bp 1 0.0938382976278178 1 0.182513743638992 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27258429 chr6:27258410 . . 0 2 hm5C_associated_SNPs_6069 0 0 1 0 0 unknown 1 0.500231643648846 1 0.999536712702308 hm5C_site_8914 DeepMRMD:1;iRNA_m5C:0.999536712702308 8915 chr6 27258429 27258429 1 + C T rs115729116 27258409 + 27258389 27258429 41 CCAACGCAGCACACAGGTTTCCGTGGTGTAGTGGTTATCAC CCAACGCAGCACACAGGTTTCCGTGGTGTAGTGGTTATCAT < 41bp 1 0.254881800190763 1 0.0738210678100586 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27258409 chr6:27258429 . . 0 41 hm5C_associated_SNPs_6070 0 0 1 0 0 unknown 1 0.500231643921042 1 0.999536712157916 hm5C_site_8915 DeepMRMD:1;iRNA_m5C:0.999536712157916 8916 chr6 27258429 27258429 1 + C T rs115729116 27258410 + 27258390 27258430 41 CAACGCAGCACACAGGTTTCCGTGGTGTAGTGGTTATCACA CAACGCAGCACACAGGTTTCCGTGGTGTAGTGGTTATCATA < 41bp 1 0.415682502067812 1 0.117243558168411 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27258410 chr6:27258429 . . 0 40 hm5C_associated_SNPs_6071 0 0 1 0 0 unknown 1 0.500231643926121 1 0.999536712147757 hm5C_site_8916 DeepMRMD:1;iRNA_m5C:0.999536712147757 8917 chr6 27258429 27258429 1 + C T rs115729116 27258433 + 27258413 27258453 41 GGTGTAGTGGTTATCACATTCGCCTTACACGCGAAAGGTCC GGTGTAGTGGTTATCATATTCGCCTTACACGCGAAAGGTCC < 41bp 1 0.48669051680153 1 0.402458608150482 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27258433 chr6:27258429 . . 0 17 hm5C_associated_SNPs_6072 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_8917 DeepMRMD:1;iRNA_m5C:0.999536712157816 8918 chr6 27258429 27258429 1 + C T rs115729116 27258435 + 27258415 27258455 41 TGTAGTGGTTATCACATTCGCCTTACACGCGAAAGGTCCTC TGTAGTGGTTATCATATTCGCCTTACACGCGAAAGGTCCTC < 41bp 1 0.0993121430061449 1 0.214104980230331 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27258435 chr6:27258429 . . 0 15 hm5C_associated_SNPs_6073 0 0 1 0 0 unknown 1 0.500231643916374 1 0.999536712167251 hm5C_site_8918 DeepMRMD:1;iRNA_m5C:0.999536712167251 8919 chr6 27258429 27258429 1 + C T rs115729116 27258436 + 27258416 27258456 41 GTAGTGGTTATCACATTCGCCTTACACGCGAAAGGTCCTCG GTAGTGGTTATCATATTCGCCTTACACGCGAAAGGTCCTCG < 41bp 1 0.043941387420249 1 0.114063501358032 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27258436 chr6:27258429 . . 0 14 hm5C_associated_SNPs_6074 0 0 1 0 0 unknown 1 0.500231644490786 1 0.999536711018428 hm5C_site_8919 DeepMRMD:1;iRNA_m5C:0.999536711018428 8920 chr6 27258429 27258429 1 + C T rs115729116 27258440 + 27258420 27258460 41 TGGTTATCACATTCGCCTTACACGCGAAAGGTCCTCGGGTC TGGTTATCATATTCGCCTTACACGCGAAAGGTCCTCGGGTC < 41bp 1 0.414707220676892 1 0.22058030962944 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27258440 chr6:27258429 . . 0 10 hm5C_associated_SNPs_6075 0 0 1 0 0 unknown 1 0.500232043298466 1 0.999535913403068 hm5C_site_8920 DeepMRMD:1;iRNA_m5C:0.999535913403068 8921 chr6 27258429 27258429 1 + C T rs115729116 27258444 + 27258424 27258464 41 TATCACATTCGCCTTACACGCGAAAGGTCCTCGGGTCGAAA TATCATATTCGCCTTACACGCGAAAGGTCCTCGGGTCGAAA < 41bp 1 0.55145552991887 1 0.219224125146866 experiment 0.897088940162259 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27258444 chr6:27258429 . . 0 6 hm5C_associated_SNPs_6076 0 0 1 0 0 unknown 1 0.500231643808954 1 0.999536712382092 hm5C_site_8921 DeepMRMD:1;iRNA_m5C:0.999536712382092 8922 chr6 27261683 27261683 1 + C G rs557400837 27261674 + 27261654 27261694 41 AGCACAGATTTGCGGTCGGCCGGTTAGCTCAGTTGGTTAGA AGCACAGATTTGCGGTCGGCCGGTTAGCTGAGTTGGTTAGA < 41bp 1 0.217829162364453 1 0.200218766927719 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261674 chr6:27261683 . . 0 30 hm5C_associated_SNPs_6077 0 0 1 0 0 unknown 1 0.500231643815621 1 0.999536712368759 hm5C_site_8922 DeepMRMD:1;iRNA_m5C:0.999536712368759 8923 chr6 27261683 27261683 1 + C G rs557400837 27261700 + 27261680 27261720 41 GCTCAGTTGGTTAGAGCGTGCTGCTACTAATGCCAGGGTCG GCTGAGTTGGTTAGAGCGTGCTGCTACTAATGCCAGGGTCG < 41bp 1 0.378698972849095 1 0.111626714468002 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261700 chr6:27261683 . . 0 4 hm5C_associated_SNPs_6078 0 0 1 0 0 unknown 1 0.500231637793476 1 0.999536724413048 hm5C_site_8923 DeepMRMD:1;iRNA_m5C:0.999536724413048 8924 chr6 27261691 27261691 1 + T G rs184907678 27261674 + 27261654 27261694 41 AGCACAGATTTGCGGTCGGCCGGTTAGCTCAGTTGGTTAGA AGCACAGATTTGCGGTCGGCCGGTTAGCTCAGTTGGTGAGA < 41bp 1 0.245522843223711 1 0.163425296545029 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261674 chr6:27261691 . . 0 38 hm5C_associated_SNPs_6079 0 0 1 0 0 unknown 1 0.500231769424417 1 0.999536461151166 hm5C_site_8924 DeepMRMD:1;iRNA_m5C:0.999536461151166 8925 chr6 27261691 27261691 1 + T G rs184907678 27261700 + 27261680 27261720 41 GCTCAGTTGGTTAGAGCGTGCTGCTACTAATGCCAGGGTCG GCTCAGTTGGTGAGAGCGTGCTGCTACTAATGCCAGGGTCG < 41bp 1 0.447310722913602 1 0.108926713466644 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261700 chr6:27261691 . . 0 12 hm5C_associated_SNPs_6080 0 0 1 0 0 unknown 1 0.500231718153745 1 0.99953656369251 hm5C_site_8925 DeepMRMD:1;iRNA_m5C:0.99953656369251 8926 chr6 27261692 27261692 1 + A G rs145689087 27261674 + 27261654 27261694 41 AGCACAGATTTGCGGTCGGCCGGTTAGCTCAGTTGGTTAGA AGCACAGATTTGCGGTCGGCCGGTTAGCTCAGTTGGTTGGA < 41bp 1 0.242473110330044 1 0.165137231349945 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261674 chr6:27261692 . . 0 39 hm5C_associated_SNPs_6081 0 0 1 0 0 unknown 1 0.500231678284073 1 0.999536643431854 hm5C_site_8926 DeepMRMD:1;iRNA_m5C:0.999536643431854 8927 chr6 27261692 27261692 1 + A G rs145689087 27261700 + 27261680 27261720 41 GCTCAGTTGGTTAGAGCGTGCTGCTACTAATGCCAGGGTCG GCTCAGTTGGTTGGAGCGTGCTGCTACTAATGCCAGGGTCG < 41bp 1 0.4715765219078 1 0.129121005535126 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261700 chr6:27261692 . . 0 13 hm5C_associated_SNPs_6082 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8927 DeepMRMD:1;iRNA_m5C:0.999536712157815 8928 chr6 27261706 27261706 1 + C T rs78232339 27261700 + 27261680 27261720 41 GCTCAGTTGGTTAGAGCGTGCTGCTACTAATGCCAGGGTCG GCTCAGTTGGTTAGAGCGTGCTGCTATTAATGCCAGGGTCG < 41bp 1 0.445055479311161 1 0.0781458020210266 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261700 chr6:27261706 . . 0 27 hm5C_associated_SNPs_6083 0 0 1 0 0 unknown 1 0.500231673333129 1 0.999536653333743 hm5C_site_8928 DeepMRMD:1;iRNA_m5C:0.999536653333743 8929 chr6 27261711 27261711 1 + G A rs559855431 27261700 + 27261680 27261720 41 GCTCAGTTGGTTAGAGCGTGCTGCTACTAATGCCAGGGTCG GCTCAGTTGGTTAGAGCGTGCTGCTACTAATACCAGGGTCG < 41bp 1 0.373925326383457 1 0.113781452178955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261700 chr6:27261711 . . 0 32 hm5C_associated_SNPs_6084 0 0 1 0 0 unknown 1 0.500231722594935 1 0.99953655481013 hm5C_site_8929 DeepMRMD:1;iRNA_m5C:0.99953655481013 8930 chr6 27261711 27261711 1 + G A rs559855431 27261727 + 27261707 27261747 41 TAATGCCAGGGTCGAGGTTTCGATCCCCGTACGGGCCTTTG TAATACCAGGGTCGAGGTTTCGATCCCCGTACGGGCCTTTG < 41bp 1 0.165736503012305 1 0.435107201337814 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261727 chr6:27261711 . . 0 5 hm5C_associated_SNPs_6085 0 0 1 0 0 unknown 1 0.500231642720973 1 0.999536714558054 hm5C_site_8930 DeepMRMD:1;iRNA_m5C:0.999536714558054 8931 chr6 27261713 27261713 1 + C T rs74715010 27261700 + 27261680 27261720 41 GCTCAGTTGGTTAGAGCGTGCTGCTACTAATGCCAGGGTCG GCTCAGTTGGTTAGAGCGTGCTGCTACTAATGCTAGGGTCG < 41bp 1 0.363142611724957 1 0.141044855117798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261700 chr6:27261713 . . 0 34 hm5C_associated_SNPs_6086 0 0 1 0 0 unknown 1 0.500231609144926 1 0.999536781710148 hm5C_site_8931 DeepMRMD:1;iRNA_m5C:0.999536781710148 8932 chr6 27261713 27261713 1 + C T rs74715010 27261727 + 27261707 27261747 41 TAATGCCAGGGTCGAGGTTTCGATCCCCGTACGGGCCTTTG TAATGCTAGGGTCGAGGTTTCGATCCCCGTACGGGCCTTTG < 41bp 1 0.157453168633016 1 0.3132643699646 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261727 chr6:27261713 . . 0 7 hm5C_associated_SNPs_6087 0 0 1 0 0 unknown 1 0.500231643920999 1 0.999536712158002 hm5C_site_8932 DeepMRMD:1;iRNA_m5C:0.999536712158002 8933 chr6 27261716 27261716 1 + G C rs371781670 27261700 + 27261680 27261720 41 GCTCAGTTGGTTAGAGCGTGCTGCTACTAATGCCAGGGTCG GCTCAGTTGGTTAGAGCGTGCTGCTACTAATGCCAGCGTCG < 41bp 1 0.377272872038494 1 0.105392247438431 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261700 chr6:27261716 . . 0 37 hm5C_associated_SNPs_6088 0 0 1 0 0 unknown 1 0.500231643733376 1 0.999536712533248 hm5C_site_8933 DeepMRMD:1;iRNA_m5C:0.999536712533248 8934 chr6 27261716 27261716 1 + G C rs371781670 27261713 + 27261693 27261733 41 GAGCGTGCTGCTACTAATGCCAGGGTCGAGGTTTCGATCCC GAGCGTGCTGCTACTAATGCCAGCGTCGAGGTTTCGATCCC < 41bp 1 0.687162492253755 1 0.270458161830902 experiment 0.625675015492489 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261713 chr6:27261716 . . 0 24 hm5C_associated_SNPs_6089 0 0 1 0 0 unknown 1 0.500231643921015 1 0.99953671215797 hm5C_site_8934 DeepMRMD:1;iRNA_m5C:0.99953671215797 8935 chr6 27261716 27261716 1 + G C rs371781670 27261727 + 27261707 27261747 41 TAATGCCAGGGTCGAGGTTTCGATCCCCGTACGGGCCTTTG TAATGCCAGCGTCGAGGTTTCGATCCCCGTACGGGCCTTTG < 41bp 1 0.157668805783911 1 0.245137065649033 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261727 chr6:27261716 . . 0 10 hm5C_associated_SNPs_6090 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8935 DeepMRMD:1;iRNA_m5C:0.999536712157815 8936 chr6 27261721 27261721 1 + A C rs568480121 27261727 + 27261707 27261747 41 TAATGCCAGGGTCGAGGTTTCGATCCCCGTACGGGCCTTTG TAATGCCAGGGTCGCGGTTTCGATCCCCGTACGGGCCTTTG < 41bp 1 0.181830416922987 1 0.291106790304184 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261727 chr6:27261721 . . 0 15 hm5C_associated_SNPs_6091 0 0 1 0 0 unknown 1 0.500231643911384 1 0.999536712177231 hm5C_site_8936 DeepMRMD:1;iRNA_m5C:0.999536712177231 8937 chr6 27261733 27261733 1 + C T rs545997296 27261727 + 27261707 27261747 41 TAATGCCAGGGTCGAGGTTTCGATCCCCGTACGGGCCTTTG TAATGCCAGGGTCGAGGTTTCGATCCTCGTACGGGCCTTTG < 41bp 1 0.215523892642412 1 0.206825315952301 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261727 chr6:27261733 . . 0 27 hm5C_associated_SNPs_6092 0 0 1 0 0 unknown 1 0.500231637767393 1 0.999536724465214 hm5C_site_8937 DeepMRMD:1;iRNA_m5C:0.999536724465214 8938 chr6 27261733 27261733 1 + C T rs545997296 27261743 + 27261723 27261763 41 GTTTCGATCCCCGTACGGGCCTTTGGCTTTTTCCCCCCTCG GTTTCGATCCTCGTACGGGCCTTTGGCTTTTTCCCCCCTCG < 41bp 1 0.151105954139596 1 0.0807064473628998 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261743 chr6:27261733 . . 0 11 hm5C_associated_SNPs_6093 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_8938 DeepMRMD:1;iRNA_m5C:0.999536712157815 8939 chr6 27261735 27261735 1 + G A rs11966985 27261727 + 27261707 27261747 41 TAATGCCAGGGTCGAGGTTTCGATCCCCGTACGGGCCTTTG TAATGCCAGGGTCGAGGTTTCGATCCCCATACGGGCCTTTG < 41bp 1 0.159905113646818 1 0.351344406604767 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261727 chr6:27261735 . . 0 29 hm5C_associated_SNPs_6094 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8939 DeepMRMD:1;iRNA_m5C:0.999536712157815 8940 chr6 27261735 27261735 1 + G A rs11966985 27261743 + 27261723 27261763 41 GTTTCGATCCCCGTACGGGCCTTTGGCTTTTTCCCCCCTCG GTTTCGATCCCCATACGGGCCTTTGGCTTTTTCCCCCCTCG < 41bp 1 0.121471664086418 1 0.0364600419998169 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261743 chr6:27261735 . . 0 13 hm5C_associated_SNPs_6095 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8940 DeepMRMD:1;iRNA_m5C:0.999536712157815 8941 chr6 27261738 27261738 1 + C G rs142746360 27261727 + 27261707 27261747 41 TAATGCCAGGGTCGAGGTTTCGATCCCCGTACGGGCCTTTG TAATGCCAGGGTCGAGGTTTCGATCCCCGTAGGGGCCTTTG < 41bp 1 0.183428100461615 1 0.466518968343735 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261727 chr6:27261738 . . 0 32 hm5C_associated_SNPs_6096 0 0 1 0 0 unknown 1 0.500231643920839 1 0.999536712158321 hm5C_site_8941 DeepMRMD:1;iRNA_m5C:0.999536712158321 8942 chr6 27261738 27261738 1 + C G rs142746360 27261743 + 27261723 27261763 41 GTTTCGATCCCCGTACGGGCCTTTGGCTTTTTCCCCCCTCG GTTTCGATCCCCGTAGGGGCCTTTGGCTTTTTCCCCCCTCG < 41bp 1 0.192636329397779 1 0.0965715944766998 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27261743 chr6:27261738 . . 0 16 hm5C_associated_SNPs_6097 0 0 1 0 0 unknown 1 0.500231643921096 1 0.999536712157809 hm5C_site_8942 DeepMRMD:1;iRNA_m5C:0.999536712157809 8943 chr6 27263215 27263215 1 + T A rs563865270 27263216 + 27263196 27263236 41 TGCTAGTTCAGCTTCAGGTTCCATGGTGTAATGGTTAGCAC TGCTAGTTCAGCTTCAGGTACCATGGTGTAATGGTTAGCAC < 41bp 1 0.0919322233732722 1 0.0497441291809082 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263216 chr6:27263215 . . 0 20 hm5C_associated_SNPs_6098 0 0 1 0 0 unknown 1 0.500231542244405 1 0.99953691551119 hm5C_site_8943 DeepMRMD:1;iRNA_m5C:0.99953691551119 8944 chr6 27263215 27263215 1 + T A rs563865270 27263217 + 27263197 27263237 41 GCTAGTTCAGCTTCAGGTTCCATGGTGTAATGGTTAGCACT GCTAGTTCAGCTTCAGGTACCATGGTGTAATGGTTAGCACT < 41bp 1 0.278497261494344 1 0.355110764503479 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263217 chr6:27263215 . . 0 19 hm5C_associated_SNPs_6099 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8944 DeepMRMD:1;iRNA_m5C:0.999536712157815 8945 chr6 27263215 27263215 1 + T A rs563865270 27263234 + 27263214 27263254 41 TTCCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCGG TACCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCGG < 41bp 1 0.0832987633297635 1 0.084241509437561 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263234 chr6:27263215 . . 0 2 hm5C_associated_SNPs_6100 0 0 1 0 0 unknown 1 0.500231643676751 1 0.999536712646497 hm5C_site_8945 DeepMRMD:1;iRNA_m5C:0.999536712646497 8946 chr6 27263218 27263218 1 + A C rs142451802 27263216 + 27263196 27263236 41 TGCTAGTTCAGCTTCAGGTTCCATGGTGTAATGGTTAGCAC TGCTAGTTCAGCTTCAGGTTCCCTGGTGTAATGGTTAGCAC < 41bp 1 0.125075578382311 1 0.0519613921642303 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263216 chr6:27263218 . . 0 23 hm5C_associated_SNPs_6101 0 0 1 0 0 unknown 1 0.500231643920796 1 0.999536712158408 hm5C_site_8946 DeepMRMD:1;iRNA_m5C:0.999536712158408 8947 chr6 27263218 27263218 1 + A C rs142451802 27263217 + 27263197 27263237 41 GCTAGTTCAGCTTCAGGTTCCATGGTGTAATGGTTAGCACT GCTAGTTCAGCTTCAGGTTCCCTGGTGTAATGGTTAGCACT < 41bp 1 0.101024423230051 1 0.176293849945068 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263217 chr6:27263218 . . 0 22 hm5C_associated_SNPs_6102 0 0 1 0 0 unknown 1 0.50023164389535 1 0.9995367122093 hm5C_site_8947 DeepMRMD:1;iRNA_m5C:0.9995367122093 8948 chr6 27263218 27263218 1 + A C rs142451802 27263234 + 27263214 27263254 41 TTCCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCGG TTCCCTGGTGTAATGGTTAGCACTCTGGACTCTGAATCCGG < 41bp 1 0.0872456711275381 1 0.0604392886161804 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263234 chr6:27263218 . . 0 5 hm5C_associated_SNPs_6103 0 0 1 0 0 unknown 1 0.500231643920876 1 0.999536712158248 hm5C_site_8948 DeepMRMD:1;iRNA_m5C:0.999536712158248 8949 chr6 27263218 27263218 1 + A C rs142451802 27263236 + 27263216 27263256 41 CCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCGGTA CCCTGGTGTAATGGTTAGCACTCTGGACTCTGAATCCGGTA < 41bp 1 0.292483709790158 1 0.254900813102722 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263236 chr6:27263218 . . 0 3 hm5C_associated_SNPs_6104 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8949 DeepMRMD:1;iRNA_m5C:0.999536712157815 8950 chr6 27263252 27263252 1 + C T rs16897345 27263234 + 27263214 27263254 41 TTCCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCGG TTCCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCTGG < 41bp 1 0.0871727794261705 1 0.0493232905864716 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263234 chr6:27263252 . . 0 39 hm5C_associated_SNPs_6106 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8950 DeepMRMD:1;iRNA_m5C:0.999536712157815 8951 chr6 27263252 27263252 1 + C T rs16897345 27263236 + 27263216 27263256 41 CCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCGGTA CCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCTGGTA < 41bp 1 0.261246863494754 1 0.211858361959457 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263236 chr6:27263252 . . 0 37 hm5C_associated_SNPs_6107 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8951 DeepMRMD:1;iRNA_m5C:0.999536712157815 8952 chr6 27263252 27263252 1 + C T rs16897345 27263243 + 27263223 27263263 41 GTAATGGTTAGCACTCTGGACTCTGAATCCGGTAATCCGAG GTAATGGTTAGCACTCTGGACTCTGAATCTGGTAATCCGAG < 41bp 1 0.0919356630408549 1 0.0619685053825378 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263243 chr6:27263252 . . 0 30 hm5C_associated_SNPs_6109 0 0 1 0 0 unknown 1 0.500230842533609 1 0.999538314932782 hm5C_site_8952 DeepMRMD:1;iRNA_m5C:0.999538314932782 8953 chr6 27263252 27263252 1 + C T rs16897345 27263245 + 27263225 27263265 41 AATGGTTAGCACTCTGGACTCTGAATCCGGTAATCCGAGTT AATGGTTAGCACTCTGGACTCTGAATCTGGTAATCCGAGTT < 41bp 1 0.608520545091136 1 0.86541473865509 experiment 0.782958909817729 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263245 chr6:27263252 . . 0 28 hm5C_associated_SNPs_6110 0 0 1 0 0 unknown 1 0.500231643952135 0.26917052268982 0.99953671209573 hm5C_site_8953 DeepMRMD:0.26917052268982;iRNA_m5C:0.99953671209573 8954 chr6 27263252 27263252 1 + C T rs16897345 27263251 + 27263231 27263271 41 TAGCACTCTGGACTCTGAATCCGGTAATCCGAGTTCAAATC TAGCACTCTGGACTCTGAATCTGGTAATCCGAGTTCAAATC < 41bp 1 0.44989484929173 1 0.695084452629089 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263251 chr6:27263252 . . 0 22 hm5C_associated_SNPs_6111 0 0 1 0 0 unknown 1 0.500231643921059 0.609831094741822 0.999536712157883 hm5C_site_8954 DeepMRMD:0.609831094741822;iRNA_m5C:0.999536712157883 8955 chr6 27263252 27263252 1 + C T rs16897345 27263259 + 27263239 27263279 41 TGGACTCTGAATCCGGTAATCCGAGTTCAAATCTCGGTGGA TGGACTCTGAATCTGGTAATCCGAGTTCAAATCTCGGTGGA < 41bp 1 0.406265824711999 1 0.864916324615479 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263259 chr6:27263252 . . 0 14 hm5C_associated_SNPs_6112 0 0 1 0 0 unknown 1 0.500231643921092 0.270167350769042 0.999536712157815 hm5C_site_8955 DeepMRMD:0.270167350769042;iRNA_m5C:0.999536712157815 8956 chr6 27263252 27263252 1 + C T rs16897345 27263260 + 27263240 27263280 41 GGACTCTGAATCCGGTAATCCGAGTTCAAATCTCGGTGGAA GGACTCTGAATCTGGTAATCCGAGTTCAAATCTCGGTGGAA < 41bp 1 0.408470785243323 1 0.429169297218323 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263260 chr6:27263252 . . 0 13 hm5C_associated_SNPs_6113 0 0 1 0 0 unknown 1 0.500177403965199 1 0.999645192069601 hm5C_site_8956 DeepMRMD:1;iRNA_m5C:0.999645192069601 8957 chr6 27263252 27263252 1 + C T rs16897345 27263266 + 27263246 27263286 41 TGAATCCGGTAATCCGAGTTCAAATCTCGGTGGAACCTTGG TGAATCTGGTAATCCGAGTTCAAATCTCGGTGGAACCTTGG < 41bp 1 0.166813151263741 1 0.209116369485855 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263266 chr6:27263252 . . 0 7 hm5C_associated_SNPs_6114 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_8957 DeepMRMD:1;iRNA_m5C:0.999536712157816 8958 chr6 27263261 27263261 1 + G A rs114618853 27263243 + 27263223 27263263 41 GTAATGGTTAGCACTCTGGACTCTGAATCCGGTAATCCGAG GTAATGGTTAGCACTCTGGACTCTGAATCCGGTAATCCAAG < 41bp 1 0.0961906386994189 1 0.0794002115726471 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263243 chr6:27263261 . . 0 39 hm5C_associated_SNPs_6116 0 0 1 0 0 unknown 1 0.500231639973087 1 0.999536720053826 hm5C_site_8958 DeepMRMD:1;iRNA_m5C:0.999536720053826 8959 chr6 27263261 27263261 1 + G A rs114618853 27263245 + 27263225 27263265 41 AATGGTTAGCACTCTGGACTCTGAATCCGGTAATCCGAGTT AATGGTTAGCACTCTGGACTCTGAATCCGGTAATCCAAGTT < 41bp 1 0.604742781815466 1 0.853984475135803 experiment 0.790514436369068 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263245 chr6:27263261 . . 0 37 hm5C_associated_SNPs_6117 0 0 1 0 0 unknown 1 0.500231643919056 0.292031049728394 0.999536712161887 hm5C_site_8959 DeepMRMD:0.292031049728394;iRNA_m5C:0.999536712161887 8960 chr6 27263261 27263261 1 + G A rs114618853 27263251 + 27263231 27263271 41 TAGCACTCTGGACTCTGAATCCGGTAATCCGAGTTCAAATC TAGCACTCTGGACTCTGAATCCGGTAATCCAAGTTCAAATC < 41bp 1 0.278916002003108 1 0.402924120426178 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263251 chr6:27263261 . . 0 31 hm5C_associated_SNPs_6118 0 0 1 0 0 unknown 1 0.500231643963723 1 0.999536712072555 hm5C_site_8960 DeepMRMD:1;iRNA_m5C:0.999536712072555 8961 chr6 27263261 27263261 1 + G A rs114618853 27263252 + 27263232 27263272 41 AGCACTCTGGACTCTGAATCCGGTAATCCGAGTTCAAATCT AGCACTCTGGACTCTGAATCCGGTAATCCAAGTTCAAATCT < 41bp 1 0.630979495686849 1 0.594524085521698 experiment 0.738041008626302 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263252 chr6:27263261 . . 0 30 hm5C_associated_SNPs_6119 0 0 1 0 0 unknown 1 0.500231643921092 0.810951828956604 0.999536712157815 hm5C_site_8961 DeepMRMD:0.810951828956604;iRNA_m5C:0.999536712157815 8962 chr6 27263261 27263261 1 + G A rs114618853 27263259 + 27263239 27263279 41 TGGACTCTGAATCCGGTAATCCGAGTTCAAATCTCGGTGGA TGGACTCTGAATCCGGTAATCCAAGTTCAAATCTCGGTGGA < 41bp 1 0.284693486075026 1 0.81394499540329 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263259 chr6:27263261 . . 0 23 hm5C_associated_SNPs_6120 0 0 1 0 0 unknown 1 0.500231643921092 0.37211000919342 0.999536712157815 hm5C_site_8962 DeepMRMD:0.37211000919342;iRNA_m5C:0.999536712157815 8963 chr6 27263261 27263261 1 + G A rs114618853 27263260 + 27263240 27263280 41 GGACTCTGAATCCGGTAATCCGAGTTCAAATCTCGGTGGAA GGACTCTGAATCCGGTAATCCAAGTTCAAATCTCGGTGGAA < 41bp 1 0.366321877667024 1 0.474271684885025 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263260 chr6:27263261 . . 0 22 hm5C_associated_SNPs_6121 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157817 hm5C_site_8963 DeepMRMD:1;iRNA_m5C:0.999536712157817 8964 chr6 27263261 27263261 1 + G A rs114618853 27263266 + 27263246 27263286 41 TGAATCCGGTAATCCGAGTTCAAATCTCGGTGGAACCTTGG TGAATCCGGTAATCCAAGTTCAAATCTCGGTGGAACCTTGG < 41bp 1 0.170592800971414 1 0.287119686603546 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263266 chr6:27263261 . . 0 16 hm5C_associated_SNPs_6122 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8964 DeepMRMD:1;iRNA_m5C:0.999536712157815 8965 chr6 27263261 27263261 1 + G A rs114618853 27263273 + 27263253 27263293 41 GGTAATCCGAGTTCAAATCTCGGTGGAACCTTGGATTTAGT GGTAATCCAAGTTCAAATCTCGGTGGAACCTTGGATTTAGT < 41bp 1 0.34762546450129 1 0.45972529053688 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263273 chr6:27263261 . . 0 9 hm5C_associated_SNPs_6124 0 0 1 0 0 unknown 1 0.500231643920876 1 0.999536712158248 hm5C_site_8965 DeepMRMD:1;iRNA_m5C:0.999536712158248 8966 chr6 27263261 27263261 1 + G A rs114618853 27263281 + 27263261 27263301 41 GAGTTCAAATCTCGGTGGAACCTTGGATTTAGTCCTCTGCA AAGTTCAAATCTCGGTGGAACCTTGGATTTAGTCCTCTGCA < 41bp 1 0.041619673206811 1 0.0604898929595947 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27263281 chr6:27263261 . . 0 1 hm5C_associated_SNPs_6125 0 0 1 0 0 unknown 1 0.500231643920944 1 0.999536712158112 hm5C_site_8966 DeepMRMD:1;iRNA_m5C:0.999536712158112 8967 chr6 27265776 27265776 1 + A G rs185033638 27265785 + 27265765 27265805 41 TCCCCAGAAGGACGAGGTGGCCGAGTGGTTAAGGCGATGGA TCCCCAGAAGGGCGAGGTGGCCGAGTGGTTAAGGCGATGGA < 41bp 1 0.401370619181735 1 0.644881546497345 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265785 chr6:27265776 . . 0 12 hm5C_associated_SNPs_6126 0 0 1 0 0 unknown 1 0.500231697284883 0.71023690700531 0.999536605430233 hm5C_site_8967 DeepMRMD:0.71023690700531;iRNA_m5C:0.999536605430233 8968 chr6 27265777 27265777 1 + C A rs115817827 27265785 + 27265765 27265805 41 TCCCCAGAAGGACGAGGTGGCCGAGTGGTTAAGGCGATGGA TCCCCAGAAGGAAGAGGTGGCCGAGTGGTTAAGGCGATGGA < 41bp 1 0.300045250554629 1 0.412859082221985 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265785 chr6:27265777 . . 0 13 hm5C_associated_SNPs_6128 0 0 1 0 0 unknown 1 0.500231643921113 1 0.999536712157775 hm5C_site_8968 DeepMRMD:1;iRNA_m5C:0.999536712157775 8969 chr6 27265777 27265777 1 + C A rs115817827 27265786 + 27265766 27265806 41 CCCCAGAAGGACGAGGTGGCCGAGTGGTTAAGGCGATGGAC CCCCAGAAGGAAGAGGTGGCCGAGTGGTTAAGGCGATGGAC < 41bp 1 0.696212033233059 1 0.840258598327637 experiment 0.607575933533882 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265786 chr6:27265777 . . 0 12 hm5C_associated_SNPs_6129 0 0 1 0 0 unknown 1 0.500231643921173 0.319482803344726 0.999536712157654 hm5C_site_8969 DeepMRMD:0.319482803344726;iRNA_m5C:0.999536712157654 8970 chr6 27265791 27265791 1 + G A rs190170214 27265785 + 27265765 27265805 41 TCCCCAGAAGGACGAGGTGGCCGAGTGGTTAAGGCGATGGA TCCCCAGAAGGACGAGGTGGCCGAGTAGTTAAGGCGATGGA < 41bp 1 0.353528421882484 1 0.254449963569641 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265785 chr6:27265791 . . 0 27 hm5C_associated_SNPs_6130 0 0 1 0 0 unknown 1 0.500231643930025 1 0.999536712139949 hm5C_site_8970 DeepMRMD:1;iRNA_m5C:0.999536712139949 8971 chr6 27265791 27265791 1 + G A rs190170214 27265786 + 27265766 27265806 41 CCCCAGAAGGACGAGGTGGCCGAGTGGTTAAGGCGATGGAC CCCCAGAAGGACGAGGTGGCCGAGTAGTTAAGGCGATGGAC < 41bp 1 0.656370804321601 1 0.804619431495667 experiment 0.687258391356798 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265786 chr6:27265791 . . 0 26 hm5C_associated_SNPs_6131 0 0 1 0 0 unknown 1 0.500231643921526 0.390761137008666 0.999536712156947 hm5C_site_8971 DeepMRMD:0.390761137008666;iRNA_m5C:0.999536712156947 8972 chr6 27265791 27265791 1 + G A rs190170214 27265799 + 27265779 27265819 41 AGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTG AGGTGGCCGAGTAGTTAAGGCGATGGACTGCTAATCCATTG < 41bp 1 0.528840687234368 1 0.257897615432739 experiment 0.942318625531264 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265799 chr6:27265791 . . 0 13 hm5C_associated_SNPs_6132 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8972 DeepMRMD:1;iRNA_m5C:0.999536712157815 8973 chr6 27265797 27265797 1 + G A rs1018372 27265785 + 27265765 27265805 41 TCCCCAGAAGGACGAGGTGGCCGAGTGGTTAAGGCGATGGA TCCCCAGAAGGACGAGGTGGCCGAGTGGTTAAAGCGATGGA < 41bp 1 0.355235499018148 1 0.460408449172974 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265785 chr6:27265797 . . 0 33 hm5C_associated_SNPs_6133 0 0 1 0 0 unknown 1 0.500231643957537 1 0.999536712084926 hm5C_site_8973 DeepMRMD:1;iRNA_m5C:0.999536712084926 8974 chr6 27265797 27265797 1 + G A rs1018372 27265799 + 27265779 27265819 41 AGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTG AGGTGGCCGAGTGGTTAAAGCGATGGACTGCTAATCCATTG < 41bp 1 0.672289392634622 1 0.259947240352631 experiment 0.655421214730755 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265799 chr6:27265797 . . 0 19 hm5C_associated_SNPs_6135 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_8974 DeepMRMD:1;iRNA_m5C:0.999536712157816 8975 chr6 27265797 27265797 1 + G A rs1018372 27265815 + 27265795 27265835 41 AAGGCGATGGACTGCTAATCCATTGTGCTCTGCACGCGTGG AAAGCGATGGACTGCTAATCCATTGTGCTCTGCACGCGTGG < 41bp 1 0.337677651546936 1 0.111444562673569 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265815 chr6:27265797 . . 0 3 hm5C_associated_SNPs_6136 0 0 1 0 0 unknown 1 0.500231642419549 1 0.999536715160902 hm5C_site_8975 DeepMRMD:1;iRNA_m5C:0.999536715160902 8976 chr6 27265816 27265816 1 + A C rs546634500 27265799 + 27265779 27265819 41 AGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTG AGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCCTTG < 41bp 1 0.635709070145472 1 0.448691666126251 experiment 0.728581859709055 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265799 chr6:27265816 . . 0 38 hm5C_associated_SNPs_6137 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8976 DeepMRMD:1;iRNA_m5C:0.999536712157815 8977 chr6 27265816 27265816 1 + A C rs546634500 27265815 + 27265795 27265835 41 AAGGCGATGGACTGCTAATCCATTGTGCTCTGCACGCGTGG AAGGCGATGGACTGCTAATCCCTTGTGCTCTGCACGCGTGG < 41bp 1 0.155028013506139 1 0.071927547454834 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265815 chr6:27265816 . . 0 22 hm5C_associated_SNPs_6138 0 0 1 0 0 unknown 1 0.500231643925292 1 0.999536712149417 hm5C_site_8977 DeepMRMD:1;iRNA_m5C:0.999536712149417 8978 chr6 27265816 27265816 1 + A C rs546634500 27265822 + 27265802 27265842 41 TGGACTGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAA TGGACTGCTAATCCCTTGTGCTCTGCACGCGTGGGTTCGAA < 41bp 1 0.177511547373693 1 0.116722524166107 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265822 chr6:27265816 . . 0 15 hm5C_associated_SNPs_6139 0 0 1 0 0 unknown 1 0.500231643694618 1 0.999536712610764 hm5C_site_8978 DeepMRMD:1;iRNA_m5C:0.999536712610764 8979 chr6 27265816 27265816 1 + A C rs546634500 27265827 + 27265807 27265847 41 TGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAATCCCA TGCTAATCCCTTGTGCTCTGCACGCGTGGGTTCGAATCCCA < 41bp 1 0.408260443371138 1 0.0230160057544708 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265827 chr6:27265816 . . 0 10 hm5C_associated_SNPs_6141 0 0 1 0 0 unknown 1 0.500231619475305 1 0.99953676104939 hm5C_site_8979 DeepMRMD:1;iRNA_m5C:0.99953676104939 8980 chr6 27265827 27265827 1 + C G rs62401095 27265815 + 27265795 27265835 41 AAGGCGATGGACTGCTAATCCATTGTGCTCTGCACGCGTGG AAGGCGATGGACTGCTAATCCATTGTGCTCTGGACGCGTGG < 41bp 1 0.333329168170769 1 0.142294079065323 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265815 chr6:27265827 . . 0 33 hm5C_associated_SNPs_6143 0 0 1 0 0 unknown 1 0.500231643958684 1 0.999536712082631 hm5C_site_8980 DeepMRMD:1;iRNA_m5C:0.999536712082631 8981 chr6 27265827 27265827 1 + C G rs62401095 27265822 + 27265802 27265842 41 TGGACTGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAA TGGACTGCTAATCCATTGTGCTCTGGACGCGTGGGTTCGAA < 41bp 1 0.238464778411179 1 0.120771825313568 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265822 chr6:27265827 . . 0 26 hm5C_associated_SNPs_6144 0 0 1 0 0 unknown 1 0.500231587660896 1 0.999536824678208 hm5C_site_8981 DeepMRMD:1;iRNA_m5C:0.999536824678208 8982 chr6 27265827 27265827 1 + C G rs62401095 27265839 + 27265819 27265859 41 GTGCTCTGCACGCGTGGGTTCGAATCCCACCTTCGTCGACC GTGCTCTGGACGCGTGGGTTCGAATCCCACCTTCGTCGACC < 41bp 1 0.279010607045835 1 0.134094029664993 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265839 chr6:27265827 . . 0 9 hm5C_associated_SNPs_6146 0 0 1 0 0 unknown 1 0.500231643921088 1 0.999536712157824 hm5C_site_8982 DeepMRMD:1;iRNA_m5C:0.999536712157824 8983 chr6 27265827 27265827 1 + C G rs62401095 27265844 + 27265824 27265864 41 CTGCACGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTT CTGGACGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTT < 41bp 1 0.0922415746083389 1 0.0362120866775513 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265844 chr6:27265827 . . 0 4 hm5C_associated_SNPs_6147 0 0 1 0 0 unknown 1 0.500235474109856 1 0.999529051780288 hm5C_site_8983 DeepMRMD:1;iRNA_m5C:0.999529051780288 8984 chr6 27265827 27265827 1 + C G rs62401095 27265845 + 27265825 27265865 41 TGCACGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTC TGGACGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTC < 41bp 1 0.157952721828089 1 0.0784023106098175 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265845 chr6:27265827 . . 0 3 hm5C_associated_SNPs_6148 0 0 1 0 0 unknown 1 0.500231642823384 1 0.999536714353233 hm5C_site_8984 DeepMRMD:1;iRNA_m5C:0.999536714353233 8985 chr6 27265829 27265829 1 + C A rs544388252 27265815 + 27265795 27265835 41 AAGGCGATGGACTGCTAATCCATTGTGCTCTGCACGCGTGG AAGGCGATGGACTGCTAATCCATTGTGCTCTGCAAGCGTGG < 41bp 1 0.296702330108909 1 0.0755375921726227 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265815 chr6:27265829 . . 0 35 hm5C_associated_SNPs_6149 0 0 1 0 0 unknown 1 0.500231645554264 1 0.999536708891473 hm5C_site_8985 DeepMRMD:1;iRNA_m5C:0.999536708891473 8986 chr6 27265829 27265829 1 + C A rs544388252 27265822 + 27265802 27265842 41 TGGACTGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAA TGGACTGCTAATCCATTGTGCTCTGCAAGCGTGGGTTCGAA < 41bp 1 0.167232760832982 1 0.170415550470352 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265822 chr6:27265829 . . 0 28 hm5C_associated_SNPs_6150 0 0 1 0 0 unknown 1 0.500231619339091 1 0.999536761321817 hm5C_site_8986 DeepMRMD:1;iRNA_m5C:0.999536761321817 8987 chr6 27265829 27265829 1 + C A rs544388252 27265824 + 27265804 27265844 41 GACTGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAATC GACTGCTAATCCATTGTGCTCTGCAAGCGTGGGTTCGAATC < 41bp 1 0.699727498321946 1 0.38939905166626 experiment 0.600545003356108 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265824 chr6:27265829 . . 0 26 hm5C_associated_SNPs_6151 0 0 1 0 0 unknown 1 0.50023164392089 1 0.99953671215822 hm5C_site_8987 DeepMRMD:1;iRNA_m5C:0.99953671215822 8988 chr6 27265829 27265829 1 + C A rs544388252 27265827 + 27265807 27265847 41 TGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAATCCCA TGCTAATCCATTGTGCTCTGCAAGCGTGGGTTCGAATCCCA < 41bp 1 0.346735328703777 1 0.0351614654064178 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265827 chr6:27265829 . . 0 23 hm5C_associated_SNPs_6152 0 0 1 0 0 unknown 1 0.500231646843491 1 0.999536706313018 hm5C_site_8988 DeepMRMD:1;iRNA_m5C:0.999536706313018 8989 chr6 27265829 27265829 1 + C A rs544388252 27265839 + 27265819 27265859 41 GTGCTCTGCACGCGTGGGTTCGAATCCCACCTTCGTCGACC GTGCTCTGCAAGCGTGGGTTCGAATCCCACCTTCGTCGACC < 41bp 1 0.233187632069013 1 0.161881327629089 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265839 chr6:27265829 . . 0 11 hm5C_associated_SNPs_6153 0 0 1 0 0 unknown 1 0.500231643921087 1 0.999536712157827 hm5C_site_8989 DeepMRMD:1;iRNA_m5C:0.999536712157827 8990 chr6 27265829 27265829 1 + C A rs544388252 27265844 + 27265824 27265864 41 CTGCACGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTT CTGCAAGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTT < 41bp 1 0.101323689367969 1 0.0555136501789093 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265844 chr6:27265829 . . 0 6 hm5C_associated_SNPs_6154 0 0 1 0 0 unknown 1 0.500252324680118 1 0.999495350639763 hm5C_site_8990 DeepMRMD:1;iRNA_m5C:0.999495350639763 8991 chr6 27265829 27265829 1 + C A rs544388252 27265845 + 27265825 27265865 41 TGCACGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTC TGCAAGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTC < 41bp 1 0.164662042197054 1 0.0918071568012238 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265845 chr6:27265829 . . 0 5 hm5C_associated_SNPs_6155 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_8991 DeepMRMD:1;iRNA_m5C:0.999536712157816 8992 chr6 27265829 27265829 1 + C A rs544388252 27265848 + 27265828 27265868 41 ACGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTCTTT AAGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTCTTT < 41bp 1 0.0234708799471042 1 0.0279755592346191 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265848 chr6:27265829 . . 0 2 hm5C_associated_SNPs_6156 0 0 1 0 0 unknown 1 0.500231661726719 1 0.999536676546561 hm5C_site_8992 DeepMRMD:1;iRNA_m5C:0.999536676546561 8993 chr6 27265829 27265829 1 + C A rs544388252 27265849 + 27265829 27265869 41 CGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTCTTTA AGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTCTTTA < 41bp 1 0.18859734594066 1 0.0635500550270081 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265849 chr6:27265829 . . 0 1 hm5C_associated_SNPs_6157 0 0 1 0 0 unknown 1 0.500231621264864 1 0.999536757470272 hm5C_site_8993 DeepMRMD:1;iRNA_m5C:0.999536757470272 8994 chr6 27265833 27265833 1 + T A rs560864128 27265815 + 27265795 27265835 41 AAGGCGATGGACTGCTAATCCATTGTGCTCTGCACGCGTGG AAGGCGATGGACTGCTAATCCATTGTGCTCTGCACGCGAGG < 41bp 1 0.296960651314082 1 0.164476662874222 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265815 chr6:27265833 . . 0 39 hm5C_associated_SNPs_6158 0 0 1 0 0 unknown 1 0.500231643598861 1 0.999536712802277 hm5C_site_8994 DeepMRMD:1;iRNA_m5C:0.999536712802277 8995 chr6 27265833 27265833 1 + T A rs560864128 27265822 + 27265802 27265842 41 TGGACTGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAA TGGACTGCTAATCCATTGTGCTCTGCACGCGAGGGTTCGAA < 41bp 1 0.152371070175781 1 0.0723670423030853 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265822 chr6:27265833 . . 0 32 hm5C_associated_SNPs_6159 0 0 1 0 0 unknown 1 0.500229216431005 1 0.999541567137989 hm5C_site_8995 DeepMRMD:1;iRNA_m5C:0.999541567137989 8996 chr6 27265833 27265833 1 + T A rs560864128 27265824 + 27265804 27265844 41 GACTGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAATC GACTGCTAATCCATTGTGCTCTGCACGCGAGGGTTCGAATC < 41bp 1 0.69694117549376 1 0.642159819602966 experiment 0.606117649012479 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265824 chr6:27265833 . . 0 30 hm5C_associated_SNPs_6160 0 0 1 0 0 unknown 1 0.500231643939326 0.715680360794068 0.999536712121347 hm5C_site_8996 DeepMRMD:0.715680360794068;iRNA_m5C:0.999536712121347 8997 chr6 27265833 27265833 1 + T A rs560864128 27265827 + 27265807 27265847 41 TGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAATCCCA TGCTAATCCATTGTGCTCTGCACGCGAGGGTTCGAATCCCA < 41bp 1 0.353033254849365 1 0.018082469701767 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265827 chr6:27265833 . . 0 27 hm5C_associated_SNPs_6161 0 0 1 0 0 unknown 1 0.500231667173547 1 0.999536665652906 hm5C_site_8997 DeepMRMD:1;iRNA_m5C:0.999536665652906 8998 chr6 27265833 27265833 1 + T A rs560864128 27265839 + 27265819 27265859 41 GTGCTCTGCACGCGTGGGTTCGAATCCCACCTTCGTCGACC GTGCTCTGCACGCGAGGGTTCGAATCCCACCTTCGTCGACC < 41bp 1 0.237118095727562 1 0.176946759223938 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265839 chr6:27265833 . . 0 15 hm5C_associated_SNPs_6162 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_8998 DeepMRMD:1;iRNA_m5C:0.999536712157815 8999 chr6 27265833 27265833 1 + T A rs560864128 27265844 + 27265824 27265864 41 CTGCACGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTT CTGCACGCGAGGGTTCGAATCCCACCTTCGTCGACCGTTTT < 41bp 1 0.0860174403422403 1 0.0391269624233246 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265844 chr6:27265833 . . 0 10 hm5C_associated_SNPs_6163 0 0 1 0 0 unknown 1 0.500230840316827 1 0.999538319366345 hm5C_site_8999 DeepMRMD:1;iRNA_m5C:0.999538319366345 9000 chr6 27265833 27265833 1 + T A rs560864128 27265845 + 27265825 27265865 41 TGCACGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTC TGCACGCGAGGGTTCGAATCCCACCTTCGTCGACCGTTTTC < 41bp 1 0.15278372024326 1 0.07760950922966 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265845 chr6:27265833 . . 0 9 hm5C_associated_SNPs_6164 0 0 1 0 0 unknown 1 0.50023164392109 1 0.99953671215782 hm5C_site_9000 DeepMRMD:1;iRNA_m5C:0.99953671215782 9001 chr6 27265833 27265833 1 + T A rs560864128 27265848 + 27265828 27265868 41 ACGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTCTTT ACGCGAGGGTTCGAATCCCACCTTCGTCGACCGTTTTCTTT < 41bp 1 0.032497724775718 1 0.0269369184970856 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265848 chr6:27265833 . . 0 6 hm5C_associated_SNPs_6165 0 0 1 0 0 unknown 1 0.500231686876552 1 0.999536626246895 hm5C_site_9001 DeepMRMD:1;iRNA_m5C:0.999536626246895 9002 chr6 27265833 27265833 1 + T A rs560864128 27265849 + 27265829 27265869 41 CGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTCTTTA CGCGAGGGTTCGAATCCCACCTTCGTCGACCGTTTTCTTTA < 41bp 1 0.205165016986354 1 0.063259094953537 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265849 chr6:27265833 . . 0 5 hm5C_associated_SNPs_6166 0 0 1 0 0 unknown 1 0.500231633860652 1 0.999536732278696 hm5C_site_9002 DeepMRMD:1;iRNA_m5C:0.999536732278696 9003 chr6 27265833 27265833 1 + T A rs560864128 27265852 + 27265832 27265872 41 GTGGGTTCGAATCCCACCTTCGTCGACCGTTTTCTTTAAGA GAGGGTTCGAATCCCACCTTCGTCGACCGTTTTCTTTAAGA < 41bp 1 0.150770510240395 1 0.292530477046967 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265852 chr6:27265833 . . 0 2 hm5C_associated_SNPs_6167 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_9003 DeepMRMD:1;iRNA_m5C:0.999536712157812 9004 chr6 27265855 27265855 1 + C T rs184865702 27265839 + 27265819 27265859 41 GTGCTCTGCACGCGTGGGTTCGAATCCCACCTTCGTCGACC GTGCTCTGCACGCGTGGGTTCGAATCCCACCTTCGTTGACC < 41bp 1 0.204297079370242 1 0.0738458037376404 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265839 chr6:27265855 . . 0 37 hm5C_associated_SNPs_6168 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_9004 DeepMRMD:1;iRNA_m5C:0.999536712157816 9005 chr6 27265855 27265855 1 + C T rs184865702 27265844 + 27265824 27265864 41 CTGCACGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTT CTGCACGCGTGGGTTCGAATCCCACCTTCGTTGACCGTTTT < 41bp 1 0.108309937935129 1 0.0532936751842499 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265844 chr6:27265855 . . 0 32 hm5C_associated_SNPs_6169 0 0 1 0 0 unknown 1 0.500231643925723 1 0.999536712148553 hm5C_site_9005 DeepMRMD:1;iRNA_m5C:0.999536712148553 9006 chr6 27265855 27265855 1 + C T rs184865702 27265845 + 27265825 27265865 41 TGCACGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTC TGCACGCGTGGGTTCGAATCCCACCTTCGTTGACCGTTTTC < 41bp 1 0.12495841359674 1 0.152981221675873 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265845 chr6:27265855 . . 0 31 hm5C_associated_SNPs_6170 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9006 DeepMRMD:1;iRNA_m5C:0.999536712157815 9007 chr6 27265855 27265855 1 + C T rs184865702 27265848 + 27265828 27265868 41 ACGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTCTTT ACGCGTGGGTTCGAATCCCACCTTCGTTGACCGTTTTCTTT < 41bp 1 0.0256233923810246 1 0.030068576335907 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265848 chr6:27265855 . . 0 28 hm5C_associated_SNPs_6171 0 0 1 0 0 unknown 1 0.500231644822557 1 0.999536710354885 hm5C_site_9007 DeepMRMD:1;iRNA_m5C:0.999536710354885 9008 chr6 27265855 27265855 1 + C T rs184865702 27265849 + 27265829 27265869 41 CGCGTGGGTTCGAATCCCACCTTCGTCGACCGTTTTCTTTA CGCGTGGGTTCGAATCCCACCTTCGTTGACCGTTTTCTTTA < 41bp 1 0.222473138783518 1 0.0522549152374268 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265849 chr6:27265855 . . 0 27 hm5C_associated_SNPs_6172 0 0 1 0 0 unknown 1 0.500231643913008 1 0.999536712173984 hm5C_site_9008 DeepMRMD:1;iRNA_m5C:0.999536712173984 9009 chr6 27265855 27265855 1 + C T rs184865702 27265852 + 27265832 27265872 41 GTGGGTTCGAATCCCACCTTCGTCGACCGTTTTCTTTAAGA GTGGGTTCGAATCCCACCTTCGTTGACCGTTTTCTTTAAGA < 41bp 1 0.0814767160996676 1 0.10913422703743 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PRSS16;POM121L2 ENSG00000158553 intronic Human protein_coding chr6:27265852 chr6:27265855 . . 0 24 hm5C_associated_SNPs_6173 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9009 DeepMRMD:1;iRNA_m5C:0.999536712157815 9010 chr6 27446596 27446596 1 + C T rs192190937 27446601 + 27446581 27446621 41 CTCCATTCGTGTAGTCGTGGCCGAGTGGTTAAGGCGATGGA CTCCATTCGTGTAGTTGTGGCCGAGTGGTTAAGGCGATGGA < 41bp 1 0.199043290536579 1 0.526579320430756 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27446601 chr6:27446596 . . 0 16 hm5C_associated_SNPs_6174 0 0 1 0 0 unknown 1 0.500231643921092 0.946841359138488 0.999536712157815 hm5C_site_9010 DeepMRMD:0.946841359138488;iRNA_m5C:0.999536712157815 9011 chr6 27446596 27446596 1 + C T rs192190937 27446615 + 27446595 27446635 41 TCGTGGCCGAGTGGTTAAGGCGATGGACTAGAAATCCATTG TTGTGGCCGAGTGGTTAAGGCGATGGACTAGAAATCCATTG < 41bp 1 0.551176267492941 1 0.430748373270035 experiment 0.897647465014119 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27446615 chr6:27446596 . . 0 2 hm5C_associated_SNPs_6175 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9011 DeepMRMD:1;iRNA_m5C:0.999536712157815 9012 chr6 27446603 27446603 1 + G C rs560586012 27446601 + 27446581 27446621 41 CTCCATTCGTGTAGTCGTGGCCGAGTGGTTAAGGCGATGGA CTCCATTCGTGTAGTCGTGGCCCAGTGGTTAAGGCGATGGA < 41bp 1 0.125302286785245 1 0.24687334895134 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27446601 chr6:27446603 . . 0 23 hm5C_associated_SNPs_6176 0 0 1 0 0 unknown 1 0.50023161296976 1 0.999536774060479 hm5C_site_9012 DeepMRMD:1;iRNA_m5C:0.999536774060479 9013 chr6 27446603 27446603 1 + G C rs560586012 27446615 + 27446595 27446635 41 TCGTGGCCGAGTGGTTAAGGCGATGGACTAGAAATCCATTG TCGTGGCCCAGTGGTTAAGGCGATGGACTAGAAATCCATTG < 41bp 1 0.520141231197698 1 0.398706346750259 experiment 0.959717537604604 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27446615 chr6:27446603 . . 0 9 hm5C_associated_SNPs_6177 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9013 DeepMRMD:1;iRNA_m5C:0.999536712157815 9014 chr6 27463627 27463627 1 + G A rs147439337 27463617 + 27463597 27463637 41 TCGTGGCCGAGTGGTTAAGGCGATGGACTAGAAATCCATTG TCGTGGCCGAGTGGTTAAGGCGATGGACTAAAAATCCATTG < 41bp 1 0.598307506973317 1 0.222923427820206 experiment 0.803384986053367 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27463617 chr6:27463627 . . 0 31 hm5C_associated_SNPs_6178 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9014 DeepMRMD:1;iRNA_m5C:0.999536712157815 9015 chr6 27463627 27463627 1 + G A rs147439337 27463624 + 27463604 27463644 41 CGAGTGGTTAAGGCGATGGACTAGAAATCCATTGGGGTCTC CGAGTGGTTAAGGCGATGGACTAAAAATCCATTGGGGTCTC < 41bp 1 0.594199680996634 1 0.313948094844818 experiment 0.811600638006731 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27463624 chr6:27463627 . . 0 24 hm5C_associated_SNPs_6179 0 0 1 0 0 unknown 1 0.500231643545925 1 0.99953671290815 hm5C_site_9015 DeepMRMD:1;iRNA_m5C:0.99953671290815 9016 chr6 27463634 27463634 1 + A C rs12211931 27463617 + 27463597 27463637 41 TCGTGGCCGAGTGGTTAAGGCGATGGACTAGAAATCCATTG TCGTGGCCGAGTGGTTAAGGCGATGGACTAGAAATCCCTTG < 41bp 1 0.588372177473813 1 0.552698135375977 experiment 0.823255645052374 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27463617 chr6:27463634 . . 0 38 hm5C_associated_SNPs_6180 0 0 1 0 0 unknown 1 0.500231643921092 0.894603729248046 0.999536712157815 hm5C_site_9016 DeepMRMD:0.894603729248046;iRNA_m5C:0.999536712157815 9017 chr6 27470859 27470859 1 + A C rs143290485 27470874 + 27470854 27470894 41 AATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGA AATCCCTTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGA < 41bp 1 0.6873719060712 1 0.697990477085114 experiment 0.6252561878576 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27470874 chr6:27470859 . . 0 6 hm5C_associated_SNPs_6183 0 0 1 0 0 unknown 1 0.50023164392281 0.604019045829772 0.99953671215438 hm5C_site_9017 DeepMRMD:0.604019045829772;iRNA_m5C:0.99953671215438 9018 chr6 27470871 27470871 1 + C A rs148315012 27470882 + 27470862 27470902 41 GGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACGAGT GGGGTCTCCACGCGCAGGTTCGAATCCTGCCGACTACGAGT < 41bp 1 0.137890348856108 1 0.0591928958892822 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27470882 chr6:27470871 . . 0 10 hm5C_associated_SNPs_6186 0 0 1 0 0 unknown 1 0.500231508464156 1 0.999536983071687 hm5C_site_9018 DeepMRMD:1;iRNA_m5C:0.999536983071687 9019 chr6 27470871 27470871 1 + C A rs148315012 27470887 + 27470867 27470907 41 CTCCCCGCGCAGGTTCGAATCCTGCCGACTACGAGTTCGAG CTCCACGCGCAGGTTCGAATCCTGCCGACTACGAGTTCGAG < 41bp 1 0.0555497566079753 1 0.0549270510673523 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27470887 chr6:27470871 . . 0 5 hm5C_associated_SNPs_6187 0 0 1 0 0 unknown 1 0.500231738753646 1 0.999536522492707 hm5C_site_9019 DeepMRMD:1;iRNA_m5C:0.999536522492707 9020 chr6 27471548 27471548 1 + C A rs185973452 27471549 + 27471529 27471569 41 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGAC TTAGTATAGTGGTGAGTATACCCGCCTGTCACGCGGGAGAC < 41bp 1 0.412792783099513 1 0.0502713024616241 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27471549 chr6:27471548 . . 0 20 hm5C_associated_SNPs_6188 0 0 1 0 0 unknown 1 0.500231640049798 1 0.999536719900403 hm5C_site_9020 DeepMRMD:1;iRNA_m5C:0.999536719900403 9021 chr6 27471548 27471548 1 + C A rs185973452 27471550 + 27471530 27471570 41 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACC TAGTATAGTGGTGAGTATACCCGCCTGTCACGCGGGAGACC < 41bp 1 0.232575272225347 1 0.140576809644699 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27471550 chr6:27471548 . . 0 19 hm5C_associated_SNPs_6189 0 0 1 0 0 unknown 1 0.50023164539841 1 0.999536709203181 hm5C_site_9021 DeepMRMD:1;iRNA_m5C:0.999536709203181 9022 chr6 27471548 27471548 1 + C A rs185973452 27471553 + 27471533 27471573 41 TATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGG TATAGTGGTGAGTATACCCGCCTGTCACGCGGGAGACCGGG < 41bp 1 0.105736089047276 1 0.164466351270676 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27471553 chr6:27471548 . . 0 16 hm5C_associated_SNPs_6190 0 0 1 0 0 unknown 1 0.500231643921304 1 0.999536712157392 hm5C_site_9022 DeepMRMD:1;iRNA_m5C:0.999536712157392 9023 chr6 27471590 27471590 1 + G A rs60371651 27471577 + 27471557 27471597 41 TCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGAAA TCACGCGGGAGACCGGGGTTCGATTCCCCGACGAGGAGAAA < 41bp 1 0.179922999067894 1 0.209753751754761 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27471577 chr6:27471590 . . 0 34 hm5C_associated_SNPs_6191 0 0 1 0 0 unknown 1 0.500231643930309 1 0.999536712139382 hm5C_site_9023 DeepMRMD:1;iRNA_m5C:0.999536712139382 9024 chr6 27471590 27471590 1 + G A rs60371651 27471584 + 27471564 27471604 41 GGAGACCGGGGTTCGATTCCCCGACGGGGAGAAAAGTTGCT GGAGACCGGGGTTCGATTCCCCGACGAGGAGAAAAGTTGCT < 41bp 1 0.213178031162101 1 0.660477876663208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27471584 chr6:27471590 . . 0 27 hm5C_associated_SNPs_6193 0 0 1 0 0 unknown 1 0.500231642702907 0.679044246673584 0.999536714594186 hm5C_site_9024 DeepMRMD:0.679044246673584;iRNA_m5C:0.999536714594186 9025 chr6 27471590 27471590 1 + G A rs60371651 27471588 + 27471568 27471608 41 ACCGGGGTTCGATTCCCCGACGGGGAGAAAAGTTGCTTTTT ACCGGGGTTCGATTCCCCGACGAGGAGAAAAGTTGCTTTTT < 41bp 1 0.678304059311035 1 0.770912945270538 experiment 0.64339188137793 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27471588 chr6:27471590 . . 0 23 hm5C_associated_SNPs_6194 0 0 1 0 0 unknown 1 0.500231643921135 0.458174109458924 0.99953671215773 hm5C_site_9025 DeepMRMD:0.458174109458924;iRNA_m5C:0.99953671215773 9026 chr6 27471592 27471592 1 + G A rs569356375 27471577 + 27471557 27471597 41 TCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGAAA TCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGAAGAAA < 41bp 1 0.182089890070585 1 0.154238224029541 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27471577 chr6:27471592 . . 0 36 hm5C_associated_SNPs_6195 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9026 DeepMRMD:1;iRNA_m5C:0.999536712157815 9027 chr6 27471592 27471592 1 + G A rs569356375 27471584 + 27471564 27471604 41 GGAGACCGGGGTTCGATTCCCCGACGGGGAGAAAAGTTGCT GGAGACCGGGGTTCGATTCCCCGACGGGAAGAAAAGTTGCT < 41bp 1 0.187078456933762 1 0.520667195320129 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF184;LINC01012 ENSG00000096654;ENSG00000270666 intergenic Human other chr6:27471584 chr6:27471592 . . 0 29 hm5C_associated_SNPs_6197 0 0 1 0 0 unknown 1 0.500233695003 0.958665609359742 0.999532609994001 hm5C_site_9027 DeepMRMD:0.958665609359742;iRNA_m5C:0.999532609994001 9028 chr6 27487319 27487319 1 + G A rs138613254 27487312 + 27487292 27487332 41 ACACGAGCTATTGCGAGGTTCCATGGTGTAATGGTTAGCAC ACACGAGCTATTGCGAGGTTCCATGGTATAATGGTTAGCAC < 41bp 1 0.165198260570712 1 0.455293774604797 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487312 chr6:27487319 . . 0 28 hm5C_associated_SNPs_6198 0 0 1 0 0 unknown 1 0.50023164152725 1 0.999536716945501 hm5C_site_9028 DeepMRMD:1;iRNA_m5C:0.999536716945501 9029 chr6 27487319 27487319 1 + G A rs138613254 27487313 + 27487293 27487333 41 CACGAGCTATTGCGAGGTTCCATGGTGTAATGGTTAGCACT CACGAGCTATTGCGAGGTTCCATGGTATAATGGTTAGCACT < 41bp 1 0.368934361983034 1 0.732790350914001 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487313 chr6:27487319 . . 0 27 hm5C_associated_SNPs_6199 0 0 1 0 0 unknown 1 0.500231645354773 0.534419298171998 0.999536709290454 hm5C_site_9029 DeepMRMD:0.534419298171998;iRNA_m5C:0.999536709290454 9030 chr6 27487319 27487319 1 + G A rs138613254 27487330 + 27487310 27487350 41 TTCCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCAG TTCCATGGTATAATGGTTAGCACTCTGGACTCTGAATCCAG < 41bp 1 0.128292562026061 1 0.0308953821659088 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487330 chr6:27487319 . . 0 10 hm5C_associated_SNPs_6200 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9030 DeepMRMD:1;iRNA_m5C:0.999536712157815 9031 chr6 27487319 27487319 1 + G A rs138613254 27487332 + 27487312 27487352 41 CCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCAGCG CCATGGTATAATGGTTAGCACTCTGGACTCTGAATCCAGCG < 41bp 1 0.331341272231484 1 0.130578935146332 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487332 chr6:27487319 . . 0 8 hm5C_associated_SNPs_6201 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9031 DeepMRMD:1;iRNA_m5C:0.999536712157815 9032 chr6 27487319 27487319 1 + G A rs138613254 27487339 + 27487319 27487359 41 GTAATGGTTAGCACTCTGGACTCTGAATCCAGCGATCCGAG ATAATGGTTAGCACTCTGGACTCTGAATCCAGCGATCCGAG < 41bp 1 0.173696593605047 1 0.0455278158187866 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487339 chr6:27487319 . . 0 1 hm5C_associated_SNPs_6202 0 0 1 0 0 unknown 1 0.500231201210281 1 0.999537597579438 hm5C_site_9032 DeepMRMD:1;iRNA_m5C:0.999537597579438 9033 chr6 27487367 27487367 1 + C A rs6923016 27487347 + 27487327 27487367 41 TAGCACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAATC TAGCACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAATA < 41bp 1 0.184380860926755 1 0.739220142364502 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487347 chr6:27487367 . . 0 41 hm5C_associated_SNPs_6203 0 0 1 0 0 unknown 1 0.500231887967294 0.521559715270996 0.999536224065412 hm5C_site_9033 DeepMRMD:0.521559715270996;iRNA_m5C:0.999536224065412 9034 chr6 27487367 27487367 1 + C A rs6923016 27487351 + 27487331 27487371 41 ACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAATCTCGG ACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAATATCGG < 41bp 1 0.05107418129259 1 0.123227745294571 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487351 chr6:27487367 . . 0 37 hm5C_associated_SNPs_6205 0 0 1 0 0 unknown 1 0.500231643921491 1 0.999536712157017 hm5C_site_9034 DeepMRMD:1;iRNA_m5C:0.999536712157017 9035 chr6 27487367 27487367 1 + C A rs6923016 27487355 + 27487335 27487375 41 TGGACTCTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGA TGGACTCTGAATCCAGCGATCCGAGTTCAAATATCGGTGGA < 41bp 1 0.368494295089834 1 0.857656240463257 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487355 chr6:27487367 . . 0 33 hm5C_associated_SNPs_6206 0 0 1 0 0 unknown 1 0.500231644046801 0.284687519073486 0.999536711906398 hm5C_site_9035 DeepMRMD:0.284687519073486;iRNA_m5C:0.999536711906398 9036 chr6 27487367 27487367 1 + C A rs6923016 27487356 + 27487336 27487376 41 GGACTCTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGAA GGACTCTGAATCCAGCGATCCGAGTTCAAATATCGGTGGAA < 41bp 1 0.320695979986703 1 0.324775218963623 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487356 chr6:27487367 . . 0 32 hm5C_associated_SNPs_6207 0 0 1 0 0 unknown 1 0.500231487754284 1 0.999537024491432 hm5C_site_9036 DeepMRMD:1;iRNA_m5C:0.999537024491432 9037 chr6 27487367 27487367 1 + C A rs6923016 27487362 + 27487342 27487382 41 TGAATCCAGCGATCCGAGTTCAAATCTCGGTGGAACCTGTC TGAATCCAGCGATCCGAGTTCAAATATCGGTGGAACCTGTC < 41bp 1 0.176157271884854 1 0.244864761829376 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487362 chr6:27487367 . . 0 26 hm5C_associated_SNPs_6208 0 0 1 0 0 unknown 1 0.500231592134905 1 0.99953681573019 hm5C_site_9037 DeepMRMD:1;iRNA_m5C:0.99953681573019 9038 chr6 27487367 27487367 1 + C A rs6923016 27487369 + 27487349 27487389 41 AGCGATCCGAGTTCAAATCTCGGTGGAACCTGTCGTTTCTT AGCGATCCGAGTTCAAATATCGGTGGAACCTGTCGTTTCTT < 41bp 1 0.440504805021942 1 0.786972999572754 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487369 chr6:27487367 . . 0 19 hm5C_associated_SNPs_6209 0 0 1 0 0 unknown 1 0.500231643477995 0.426054000854492 0.999536713044011 hm5C_site_9038 DeepMRMD:0.426054000854492;iRNA_m5C:0.999536713044011 9039 chr6 27487367 27487367 1 + C A rs6923016 27487377 + 27487357 27487397 41 GAGTTCAAATCTCGGTGGAACCTGTCGTTTCTTCTTGCTTC GAGTTCAAATATCGGTGGAACCTGTCGTTTCTTCTTGCTTC < 41bp 1 0.0488507982784583 1 0.121004074811935 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487377 chr6:27487367 . . 0 11 hm5C_associated_SNPs_6210 0 0 1 0 0 unknown 1 0.500231643918064 1 0.999536712163872 hm5C_site_9039 DeepMRMD:1;iRNA_m5C:0.999536712163872 9040 chr6 27487367 27487367 1 + C A rs6923016 27487378 + 27487358 27487398 41 AGTTCAAATCTCGGTGGAACCTGTCGTTTCTTCTTGCTTCC AGTTCAAATATCGGTGGAACCTGTCGTTTCTTCTTGCTTCC < 41bp 1 0.23885490218097 1 0.134367525577545 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487378 chr6:27487367 . . 0 10 hm5C_associated_SNPs_6211 0 0 1 0 0 unknown 1 0.500231649151633 1 0.999536701696735 hm5C_site_9040 DeepMRMD:1;iRNA_m5C:0.999536701696735 9041 chr6 27487377 27487377 1 + C G rs74776839 27487362 + 27487342 27487382 41 TGAATCCAGCGATCCGAGTTCAAATCTCGGTGGAACCTGTC TGAATCCAGCGATCCGAGTTCAAATCTCGGTGGAAGCTGTC < 41bp 1 0.141610017646069 1 0.261487543582916 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487362 chr6:27487377 . . 0 36 hm5C_associated_SNPs_6212 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9041 DeepMRMD:1;iRNA_m5C:0.999536712157815 9042 chr6 27487377 27487377 1 + C G rs74776839 27487369 + 27487349 27487389 41 AGCGATCCGAGTTCAAATCTCGGTGGAACCTGTCGTTTCTT AGCGATCCGAGTTCAAATCTCGGTGGAAGCTGTCGTTTCTT < 41bp 1 0.437339978175919 1 0.79893159866333 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487369 chr6:27487377 . . 0 29 hm5C_associated_SNPs_6213 0 0 1 0 0 unknown 1 0.500231643917225 0.40213680267334 0.99953671216555 hm5C_site_9042 DeepMRMD:0.40213680267334;iRNA_m5C:0.99953671216555 9043 chr6 27487377 27487377 1 + C G rs74776839 27487378 + 27487358 27487398 41 AGTTCAAATCTCGGTGGAACCTGTCGTTTCTTCTTGCTTCC AGTTCAAATCTCGGTGGAAGCTGTCGTTTCTTCTTGCTTCC < 41bp 1 0.246059599437456 1 0.350682139396667 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487378 chr6:27487377 . . 0 20 hm5C_associated_SNPs_6214 0 0 1 0 0 unknown 1 0.5002316439099 1 0.999536712180199 hm5C_site_9043 DeepMRMD:1;iRNA_m5C:0.999536712180199 9044 chr6 27487378 27487378 1 + C G rs185755837 27487362 + 27487342 27487382 41 TGAATCCAGCGATCCGAGTTCAAATCTCGGTGGAACCTGTC TGAATCCAGCGATCCGAGTTCAAATCTCGGTGGAACGTGTC < 41bp 1 0.159696692347145 1 0.242927104234695 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487362 chr6:27487378 . . 0 37 hm5C_associated_SNPs_6215 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9044 DeepMRMD:1;iRNA_m5C:0.999536712157815 9045 chr6 27487378 27487378 1 + C G rs185755837 27487369 + 27487349 27487389 41 AGCGATCCGAGTTCAAATCTCGGTGGAACCTGTCGTTTCTT AGCGATCCGAGTTCAAATCTCGGTGGAACGTGTCGTTTCTT < 41bp 1 0.408218190591226 1 0.732324182987213 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487369 chr6:27487378 . . 0 30 hm5C_associated_SNPs_6216 0 0 1 0 0 unknown 1 0.500231604326032 0.535351634025574 0.999536791347936 hm5C_site_9045 DeepMRMD:0.535351634025574;iRNA_m5C:0.999536791347936 9046 chr6 27487378 27487378 1 + C G rs185755837 27487377 + 27487357 27487397 41 GAGTTCAAATCTCGGTGGAACCTGTCGTTTCTTCTTGCTTC GAGTTCAAATCTCGGTGGAACGTGTCGTTTCTTCTTGCTTC < 41bp 1 0.160105078361658 1 0.547236502170563 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000270666;ENSG00000218347 intergenic Human other chr6:27487377 chr6:27487378 . . 0 22 hm5C_associated_SNPs_6217 0 0 1 0 0 unknown 1 0.500231645042458 0.905526995658874 0.999536709915084 hm5C_site_9046 DeepMRMD:0.905526995658874;iRNA_m5C:0.999536709915084 9047 chr6 27500039 27500039 1 + C G rs184632310 27500027 + 27500007 27500047 41 AAGGCGATGGACTAGAAATCCATTGGGGTTTCCCCACGCAG AAGGCGATGGACTAGAAATCCATTGGGGTTTCGCCACGCAG < 41bp 1 0.313402177831307 1 0.123077213764191 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000218347;ENSG00000219738 intergenic Human other chr6:27500027 chr6:27500039 . . 0 33 hm5C_associated_SNPs_6218 0 0 1 0 0 unknown 1 0.500231643921095 1 0.99953671215781 hm5C_site_9047 DeepMRMD:1;iRNA_m5C:0.99953671215781 9048 chr6 27500039 27500039 1 + C G rs184632310 27500040 + 27500020 27500060 41 AGAAATCCATTGGGGTTTCCCCACGCAGGTTCGAATCCTGC AGAAATCCATTGGGGTTTCGCCACGCAGGTTCGAATCCTGC < 41bp 1 0.220643331429591 1 0.163944870233536 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000218347;ENSG00000219738 intergenic Human other chr6:27500040 chr6:27500039 . . 0 20 hm5C_associated_SNPs_6220 0 0 1 0 0 unknown 1 0.500231644128965 1 0.99953671174207 hm5C_site_9048 DeepMRMD:1;iRNA_m5C:0.99953671174207 9049 chr6 27500039 27500039 1 + C G rs184632310 27500043 + 27500023 27500063 41 AATCCATTGGGGTTTCCCCACGCAGGTTCGAATCCTGCCGA AATCCATTGGGGTTTCGCCACGCAGGTTCGAATCCTGCCGA < 41bp 1 0.697993144806907 1 0.357229948043823 experiment 0.604013710386186 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000218347;ENSG00000219738 intergenic Human other chr6:27500043 chr6:27500039 . . 0 17 hm5C_associated_SNPs_6221 0 0 1 0 0 unknown 1 0.500231633504724 1 0.999536732990552 hm5C_site_9049 DeepMRMD:1;iRNA_m5C:0.999536732990552 9050 chr6 27500039 27500039 1 + C G rs184632310 27500057 + 27500037 27500077 41 TCCCCACGCAGGTTCGAATCCTGCCGACTACGGTCCCTTTC TCGCCACGCAGGTTCGAATCCTGCCGACTACGGTCCCTTTC < 41bp 1 0.49660082960433 1 0.21793457865715 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000218347;ENSG00000219738 intergenic Human other chr6:27500057 chr6:27500039 . . 0 3 hm5C_associated_SNPs_6222 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9050 DeepMRMD:1;iRNA_m5C:0.999536712157815 9051 chr6 27513498 27513498 1 + A C rs148637877 27513478 + 27513458 27513498 41 GCGTAGGTAGGTAGTCGTGGCCGAGTGGTTAAGGCGATGGA GCGTAGGTAGGTAGTCGTGGCCGAGTGGTTAAGGCGATGGC < 41bp 1 0.327211807792379 1 0.355676114559174 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000218347;ENSG00000219738 intergenic Human other chr6:27513478 chr6:27513498 . . 0 41 hm5C_associated_SNPs_6223 0 0 1 0 0 unknown 1 0.500231647111352 1 0.999536705777296 hm5C_site_9051 DeepMRMD:1;iRNA_m5C:0.999536705777296 9052 chr6 27513498 27513498 1 + A C rs148637877 27513479 + 27513459 27513499 41 CGTAGGTAGGTAGTCGTGGCCGAGTGGTTAAGGCGATGGAC CGTAGGTAGGTAGTCGTGGCCGAGTGGTTAAGGCGATGGCC < 41bp 1 0.68925794328018 1 0.841057240962982 experiment 0.621484113439639 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000218347;ENSG00000219738 intergenic Human other chr6:27513479 chr6:27513498 . . 0 40 hm5C_associated_SNPs_6224 0 0 1 0 0 unknown 1 0.500231643921092 0.317885518074036 0.999536712157815 hm5C_site_9052 DeepMRMD:0.317885518074036;iRNA_m5C:0.999536712157815 9053 chr6 27543846 27543846 1 + A C rs538192693 27543856 + 27543836 27543876 41 TCGCAAAAGAACCTGGGTAGCTCAGTAGGTAGAACATCAGA TCGCAAAAGACCCTGGGTAGCTCAGTAGGTAGAACATCAGA < 41bp 1 0.398540835119705 1 0.143732815980911 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000219738;ENSG00000206671 intergenic Human other chr6:27543856 chr6:27543846 . . 0 11 hm5C_associated_SNPs_6225 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9053 DeepMRMD:1;iRNA_m5C:0.999536712157815 9054 chr6 27543876 27543876 1 + A G rs189859043 27543856 + 27543836 27543876 41 TCGCAAAAGAACCTGGGTAGCTCAGTAGGTAGAACATCAGA TCGCAAAAGAACCTGGGTAGCTCAGTAGGTAGAACATCAGG < 41bp 1 0.420745411599144 1 0.157519668340683 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000219738;ENSG00000206671 intergenic Human other chr6:27543856 chr6:27543876 . . 0 41 hm5C_associated_SNPs_6226 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9054 DeepMRMD:1;iRNA_m5C:0.999536712157815 9055 chr6 27543889 27543889 1 + G C rs151158399 27543901 + 27543881 27543921 41 TAATCTGAGGGTCTAGGGTTCAAGTCCCTGTCCAGGCGTTG TAATCTGACGGTCTAGGGTTCAAGTCCCTGTCCAGGCGTTG < 41bp 1 0.210443129587447 1 0.183209121227264 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000219738;ENSG00000206671 intergenic Human other chr6:27543901 chr6:27543889 . . 0 9 hm5C_associated_SNPs_6227 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9055 DeepMRMD:1;iRNA_m5C:0.999536712157815 9056 chr6 27543889 27543889 1 + G C rs151158399 27543907 + 27543887 27543927 41 GAGGGTCTAGGGTTCAAGTCCCTGTCCAGGCGTTGAGTGTA GACGGTCTAGGGTTCAAGTCCCTGTCCAGGCGTTGAGTGTA < 41bp 1 0.0513405991859567 1 0.0742588341236115 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000219738;ENSG00000206671 intergenic Human other chr6:27543907 chr6:27543889 . . 0 3 hm5C_associated_SNPs_6228 0 0 1 0 0 unknown 1 0.500231627468873 1 0.999536745062254 hm5C_site_9056 DeepMRMD:1;iRNA_m5C:0.999536745062254 9057 chr6 27543905 27543905 1 + T G rs139061161 27543901 + 27543881 27543921 41 TAATCTGAGGGTCTAGGGTTCAAGTCCCTGTCCAGGCGTTG TAATCTGAGGGTCTAGGGTTCAAGGCCCTGTCCAGGCGTTG < 41bp 1 0.456143093177539 1 0.665167570114136 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000219738;ENSG00000206671 intergenic Human other chr6:27543901 chr6:27543905 . . 0 25 hm5C_associated_SNPs_6229 0 0 1 0 0 unknown 1 0.500231643921092 0.669664859771728 0.999536712157815 hm5C_site_9057 DeepMRMD:0.669664859771728;iRNA_m5C:0.999536712157815 9058 chr6 27543905 27543905 1 + T G rs139061161 27543907 + 27543887 27543927 41 GAGGGTCTAGGGTTCAAGTCCCTGTCCAGGCGTTGAGTGTA GAGGGTCTAGGGTTCAAGGCCCTGTCCAGGCGTTGAGTGTA < 41bp 1 0.0441095975217946 1 0.0827338993549347 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000219738;ENSG00000206671 intergenic Human other chr6:27543907 chr6:27543905 . . 0 19 hm5C_associated_SNPs_6230 0 0 1 0 0 unknown 1 0.500231610950047 1 0.999536778099906 hm5C_site_9058 DeepMRMD:1;iRNA_m5C:0.999536778099906 9059 chr6 27543905 27543905 1 + T G rs139061161 27543913 + 27543893 27543933 41 CTAGGGTTCAAGTCCCTGTCCAGGCGTTGAGTGTAGTTTTG CTAGGGTTCAAGGCCCTGTCCAGGCGTTGAGTGTAGTTTTG < 41bp 1 0.405352558532342 1 0.748997569084167 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000219738;ENSG00000206671 intergenic Human other chr6:27543913 chr6:27543905 . . 0 13 hm5C_associated_SNPs_6231 0 0 1 0 0 unknown 1 0.500231643921117 0.502004861831666 0.999536712157766 hm5C_site_9059 DeepMRMD:0.502004861831666;iRNA_m5C:0.999536712157766 9060 chr6 27586150 27586150 1 + C A rs61415880 27586137 + 27586117 27586157 41 TAAGTTCAATTCTATCGTGGCCCTGTAGCTCAGCGGTTGGA TAAGTTCAATTCTATCGTGGCCCTGTAGCTCAGAGGTTGGA < 41bp 1 0.0295382711445338 1 0.0207649767398834 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586137 chr6:27586150 . . 0 34 hm5C_associated_SNPs_6232 0 0 1 0 0 unknown 1 0.500231643921184 1 0.999536712157632 hm5C_site_9060 DeepMRMD:1;iRNA_m5C:0.999536712157632 9061 chr6 27586150 27586150 1 + C A rs61415880 27586138 + 27586118 27586158 41 AAGTTCAATTCTATCGTGGCCCTGTAGCTCAGCGGTTGGAG AAGTTCAATTCTATCGTGGCCCTGTAGCTCAGAGGTTGGAG < 41bp 1 0.0465323950682163 1 0.0410124957561493 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586138 chr6:27586150 . . 0 33 hm5C_associated_SNPs_6233 0 0 1 0 0 unknown 1 0.500231643921105 1 0.99953671215779 hm5C_site_9061 DeepMRMD:1;iRNA_m5C:0.99953671215779 9062 chr6 27586150 27586150 1 + C A rs61415880 27586139 + 27586119 27586159 41 AGTTCAATTCTATCGTGGCCCTGTAGCTCAGCGGTTGGAGC AGTTCAATTCTATCGTGGCCCTGTAGCTCAGAGGTTGGAGC < 41bp 1 0.31747756366464 1 0.217263549566269 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586139 chr6:27586150 . . 0 32 hm5C_associated_SNPs_6234 0 0 1 0 0 unknown 1 0.500231643921154 1 0.999536712157691 hm5C_site_9062 DeepMRMD:1;iRNA_m5C:0.999536712157691 9063 chr6 27586150 27586150 1 + C A rs61415880 27586145 + 27586125 27586165 41 ATTCTATCGTGGCCCTGTAGCTCAGCGGTTGGAGCGCTGGT ATTCTATCGTGGCCCTGTAGCTCAGAGGTTGGAGCGCTGGT < 41bp 1 0.375328458537133 1 0.296696782112122 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586145 chr6:27586150 . . 0 26 hm5C_associated_SNPs_6235 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9063 DeepMRMD:1;iRNA_m5C:0.999536712157815 9064 chr6 27586150 27586150 1 + C A rs61415880 27586159 + 27586139 27586179 41 CTGTAGCTCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGG CTGTAGCTCAGAGGTTGGAGCGCTGGTCTCGTAAACCTAGG < 41bp 1 0.383556743117064 1 0.520032942295074 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586159 chr6:27586150 . . 0 12 hm5C_associated_SNPs_6237 0 0 1 0 0 unknown 1 0.500234364828688 0.959934115409852 0.999531270342624 hm5C_site_9064 DeepMRMD:0.959934115409852;iRNA_m5C:0.999531270342624 9065 chr6 27586150 27586150 1 + C A rs61415880 27586161 + 27586141 27586181 41 GTAGCTCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGG GTAGCTCAGAGGTTGGAGCGCTGGTCTCGTAAACCTAGGGG < 41bp 1 0.587430699486028 1 0.198563754558563 experiment 0.825138601027944 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586161 chr6:27586150 . . 0 10 hm5C_associated_SNPs_6238 0 0 1 0 0 unknown 1 0.500231643928323 1 0.999536712143354 hm5C_site_9065 DeepMRMD:1;iRNA_m5C:0.999536712143354 9066 chr6 27586150 27586150 1 + C A rs61415880 27586166 + 27586146 27586186 41 TCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTG TCAGAGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTG < 41bp 1 0.419183343959898 1 0.0646527111530304 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586166 chr6:27586150 . . 0 5 hm5C_associated_SNPs_6239 0 0 1 0 0 unknown 1 0.50023165084925 1 0.999536698301499 hm5C_site_9066 DeepMRMD:1;iRNA_m5C:0.999536698301499 9067 chr6 27586150 27586150 1 + C A rs61415880 27586168 + 27586148 27586188 41 AGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTGAG AGAGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTGAG < 41bp 1 0.51582782765835 1 0.253005594015121 experiment 0.968344344683301 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586168 chr6:27586150 . . 0 3 hm5C_associated_SNPs_6240 0 0 1 0 0 unknown 1 0.500232046978495 1 0.999535906043011 hm5C_site_9067 DeepMRMD:1;iRNA_m5C:0.999535906043011 9068 chr6 27586159 27586159 1 + C T rs145791158 27586139 + 27586119 27586159 41 AGTTCAATTCTATCGTGGCCCTGTAGCTCAGCGGTTGGAGC AGTTCAATTCTATCGTGGCCCTGTAGCTCAGCGGTTGGAGT < 41bp 1 0.276105188096068 1 0.151944756507874 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586139 chr6:27586159 . . 0 41 hm5C_associated_SNPs_6241 0 0 1 0 0 unknown 1 0.500231643925796 1 0.999536712148408 hm5C_site_9068 DeepMRMD:1;iRNA_m5C:0.999536712148408 9069 chr6 27586159 27586159 1 + C T rs145791158 27586145 + 27586125 27586165 41 ATTCTATCGTGGCCCTGTAGCTCAGCGGTTGGAGCGCTGGT ATTCTATCGTGGCCCTGTAGCTCAGCGGTTGGAGTGCTGGT < 41bp 1 0.344863494295548 1 0.393097013235092 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586145 chr6:27586159 . . 0 35 hm5C_associated_SNPs_6242 0 0 1 0 0 unknown 1 0.500231643881734 1 0.999536712236532 hm5C_site_9069 DeepMRMD:1;iRNA_m5C:0.999536712236532 9070 chr6 27586159 27586159 1 + C T rs145791158 27586150 + 27586130 27586170 41 ATCGTGGCCCTGTAGCTCAGCGGTTGGAGCGCTGGTCTCGT ATCGTGGCCCTGTAGCTCAGCGGTTGGAGTGCTGGTCTCGT < 41bp 1 0.170989192307939 1 0.830018639564514 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586150 chr6:27586159 . . 0 30 hm5C_associated_SNPs_6244 0 0 1 0 0 unknown 1 0.500231643921067 0.339962720870972 0.999536712157865 hm5C_site_9070 DeepMRMD:0.339962720870972;iRNA_m5C:0.999536712157865 9071 chr6 27586159 27586159 1 + C T rs145791158 27586161 + 27586141 27586181 41 GTAGCTCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGG GTAGCTCAGCGGTTGGAGTGCTGGTCTCGTAAACCTAGGGG < 41bp 1 0.59726289009793 1 0.260401248931885 experiment 0.805474219804139 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586161 chr6:27586159 . . 0 19 hm5C_associated_SNPs_6245 0 0 1 0 0 unknown 1 0.500231643921097 1 0.999536712157806 hm5C_site_9071 DeepMRMD:1;iRNA_m5C:0.999536712157806 9072 chr6 27586159 27586159 1 + C T rs145791158 27586166 + 27586146 27586186 41 TCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTG TCAGCGGTTGGAGTGCTGGTCTCGTAAACCTAGGGGTCGTG < 41bp 1 0.381172102032047 1 0.0793164074420929 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586166 chr6:27586159 . . 0 14 hm5C_associated_SNPs_6246 0 0 1 0 0 unknown 1 0.500231736150449 1 0.999536527699102 hm5C_site_9072 DeepMRMD:1;iRNA_m5C:0.999536527699102 9073 chr6 27586159 27586159 1 + C T rs145791158 27586168 + 27586148 27586188 41 AGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTGAG AGCGGTTGGAGTGCTGGTCTCGTAAACCTAGGGGTCGTGAG < 41bp 1 0.478005205617004 1 0.464753806591034 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586168 chr6:27586159 . . 0 12 hm5C_associated_SNPs_6247 0 0 1 0 0 unknown 1 0.500310166758972 1 0.999379666482056 hm5C_site_9073 DeepMRMD:1;iRNA_m5C:0.999379666482056 9074 chr6 27586159 27586159 1 + C T rs145791158 27586174 + 27586154 27586194 41 TGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTGAGTTCAAA TGGAGTGCTGGTCTCGTAAACCTAGGGGTCGTGAGTTCAAA < 41bp 1 0.137366017309459 1 0.278529852628708 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586174 chr6:27586159 . . 0 6 hm5C_associated_SNPs_6248 0 0 1 0 0 unknown 1 0.500231620150762 1 0.999536759698476 hm5C_site_9074 DeepMRMD:1;iRNA_m5C:0.999536759698476 9075 chr6 27586165 27586165 1 + T C rs73383127 27586145 + 27586125 27586165 41 ATTCTATCGTGGCCCTGTAGCTCAGCGGTTGGAGCGCTGGT ATTCTATCGTGGCCCTGTAGCTCAGCGGTTGGAGCGCTGGC < 41bp 1 0.386406339019238 1 0.283381402492523 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586145 chr6:27586165 . . 0 41 hm5C_associated_SNPs_6250 0 0 1 0 0 unknown 1 0.500231643920859 1 0.999536712158283 hm5C_site_9075 DeepMRMD:1;iRNA_m5C:0.999536712158283 9076 chr6 27586165 27586165 1 + T C rs73383127 27586150 + 27586130 27586170 41 ATCGTGGCCCTGTAGCTCAGCGGTTGGAGCGCTGGTCTCGT ATCGTGGCCCTGTAGCTCAGCGGTTGGAGCGCTGGCCTCGT < 41bp 1 0.246547437943254 1 0.841734290122986 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586150 chr6:27586165 . . 0 36 hm5C_associated_SNPs_6251 0 0 1 0 0 unknown 1 0.500231643840897 0.316531419754028 0.999536712318206 hm5C_site_9076 DeepMRMD:0.316531419754028;iRNA_m5C:0.999536712318206 9077 chr6 27586165 27586165 1 + T C rs73383127 27586159 + 27586139 27586179 41 CTGTAGCTCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGG CTGTAGCTCAGCGGTTGGAGCGCTGGCCTCGTAAACCTAGG < 41bp 1 0.350223505608713 1 0.730645537376404 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586159 chr6:27586165 . . 0 27 hm5C_associated_SNPs_6252 0 0 1 0 0 unknown 1 0.500259409396385 0.538708925247192 0.99948118120723 hm5C_site_9077 DeepMRMD:0.538708925247192;iRNA_m5C:0.99948118120723 9078 chr6 27586165 27586165 1 + T C rs73383127 27586161 + 27586141 27586181 41 GTAGCTCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGG GTAGCTCAGCGGTTGGAGCGCTGGCCTCGTAAACCTAGGGG < 41bp 1 0.523377028636246 1 0.452966570854187 experiment 0.953245942727508 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586161 chr6:27586165 . . 0 25 hm5C_associated_SNPs_6253 0 0 1 0 0 unknown 1 0.500231643921179 1 0.999536712157642 hm5C_site_9078 DeepMRMD:1;iRNA_m5C:0.999536712157642 9079 chr6 27586165 27586165 1 + T C rs73383127 27586166 + 27586146 27586186 41 TCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTG TCAGCGGTTGGAGCGCTGGCCTCGTAAACCTAGGGGTCGTG < 41bp 1 0.354988213483646 1 0.0562659204006195 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586166 chr6:27586165 . . 0 20 hm5C_associated_SNPs_6254 0 0 1 0 0 unknown 1 0.50023171911469 1 0.999536561770619 hm5C_site_9079 DeepMRMD:1;iRNA_m5C:0.999536561770619 9080 chr6 27586165 27586165 1 + T C rs73383127 27586168 + 27586148 27586188 41 AGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTGAG AGCGGTTGGAGCGCTGGCCTCGTAAACCTAGGGGTCGTGAG < 41bp 1 0.428804760972369 1 0.289747953414917 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586168 chr6:27586165 . . 0 18 hm5C_associated_SNPs_6255 0 0 1 0 0 unknown 1 0.500232241010584 1 0.999535517978831 hm5C_site_9080 DeepMRMD:1;iRNA_m5C:0.999535517978831 9081 chr6 27586165 27586165 1 + T C rs73383127 27586174 + 27586154 27586194 41 TGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTGAGTTCAAA TGGAGCGCTGGCCTCGTAAACCTAGGGGTCGTGAGTTCAAA < 41bp 1 0.167239586784464 1 0.282210975885391 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586174 chr6:27586165 . . 0 12 hm5C_associated_SNPs_6256 0 0 1 0 0 unknown 1 0.500230615158329 1 0.999538769683342 hm5C_site_9081 DeepMRMD:1;iRNA_m5C:0.999538769683342 9082 chr6 27586177 27586177 1 + A C rs145281705 27586159 + 27586139 27586179 41 CTGTAGCTCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGG CTGTAGCTCAGCGGTTGGAGCGCTGGTCTCGTAAACCTCGG < 41bp 1 0.500093421338286 1 0.519875586032867 experiment 0.999813157323429 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586159 chr6:27586177 . . 0 39 hm5C_associated_SNPs_6259 0 0 1 0 0 unknown 1 0.500231643327561 0.960248827934266 0.999536713344877 hm5C_site_9082 DeepMRMD:0.960248827934266;iRNA_m5C:0.999536713344877 9083 chr6 27586177 27586177 1 + A C rs145281705 27586161 + 27586141 27586181 41 GTAGCTCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGG GTAGCTCAGCGGTTGGAGCGCTGGTCTCGTAAACCTCGGGG < 41bp 1 0.641351189675038 1 0.302769243717194 experiment 0.717297620649924 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586161 chr6:27586177 . . 0 37 hm5C_associated_SNPs_6260 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_9083 DeepMRMD:1;iRNA_m5C:0.999536712157816 9084 chr6 27586177 27586177 1 + A C rs145281705 27586166 + 27586146 27586186 41 TCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTG TCAGCGGTTGGAGCGCTGGTCTCGTAAACCTCGGGGTCGTG < 41bp 1 0.400811436673463 1 0.042100578546524 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586166 chr6:27586177 . . 0 32 hm5C_associated_SNPs_6261 0 0 1 0 0 unknown 1 0.500231840197903 1 0.999536319604194 hm5C_site_9084 DeepMRMD:1;iRNA_m5C:0.999536319604194 9085 chr6 27586177 27586177 1 + A C rs145281705 27586168 + 27586148 27586188 41 AGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTGAG AGCGGTTGGAGCGCTGGTCTCGTAAACCTCGGGGTCGTGAG < 41bp 1 0.536895192611019 1 0.215261429548264 experiment 0.926209614777962 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586168 chr6:27586177 . . 0 30 hm5C_associated_SNPs_6262 0 0 1 0 0 unknown 1 0.500231697118996 1 0.999536605762009 hm5C_site_9085 DeepMRMD:1;iRNA_m5C:0.999536605762009 9086 chr6 27586177 27586177 1 + A C rs145281705 27586174 + 27586154 27586194 41 TGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTGAGTTCAAA TGGAGCGCTGGTCTCGTAAACCTCGGGGTCGTGAGTTCAAA < 41bp 1 0.170600517842028 1 0.127139687538147 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586174 chr6:27586177 . . 0 24 hm5C_associated_SNPs_6263 0 0 1 0 0 unknown 1 0.500231641080346 1 0.999536717839308 hm5C_site_9086 DeepMRMD:1;iRNA_m5C:0.999536717839308 9087 chr6 27586181 27586181 1 + G A rs9393829 27586161 + 27586141 27586181 41 GTAGCTCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGG GTAGCTCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGA < 41bp 1 0.595914215662306 1 0.376331448554993 experiment 0.808171568675389 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586161 chr6:27586181 . . 0 41 hm5C_associated_SNPs_6265 0 0 1 0 0 unknown 1 0.500231790457204 1 0.999536419085592 hm5C_site_9087 DeepMRMD:1;iRNA_m5C:0.999536419085592 9088 chr6 27586181 27586181 1 + G A rs9393829 27586166 + 27586146 27586186 41 TCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTG TCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGATCGTG < 41bp 1 0.376959858138782 1 0.0995675921440125 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586166 chr6:27586181 . . 0 36 hm5C_associated_SNPs_6266 0 0 1 0 0 unknown 1 0.50023165714572 1 0.99953668570856 hm5C_site_9088 DeepMRMD:1;iRNA_m5C:0.99953668570856 9089 chr6 27586181 27586181 1 + G A rs9393829 27586168 + 27586148 27586188 41 AGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTGAG AGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGATCGTGAG < 41bp 1 0.499482621254738 1 0.385249137878418 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586168 chr6:27586181 . . 0 34 hm5C_associated_SNPs_6267 0 0 1 0 0 unknown 1 0.500234444915763 1 0.999531110168473 hm5C_site_9089 DeepMRMD:1;iRNA_m5C:0.999531110168473 9090 chr6 27586181 27586181 1 + G A rs9393829 27586174 + 27586154 27586194 41 TGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTGAGTTCAAA TGGAGCGCTGGTCTCGTAAACCTAGGGATCGTGAGTTCAAA < 41bp 1 0.134824274968539 1 0.17254576086998 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586174 chr6:27586181 . . 0 28 hm5C_associated_SNPs_6268 0 0 1 0 0 unknown 1 0.50023132968194 1 0.999537340636121 hm5C_site_9090 DeepMRMD:1;iRNA_m5C:0.999537340636121 9091 chr6 27586186 27586186 1 + G A rs553749591 27586166 + 27586146 27586186 41 TCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTG TCAGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTA < 41bp 1 0.396111655898383 1 0.0563017427921295 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586166 chr6:27586186 . . 0 41 hm5C_associated_SNPs_6270 0 0 1 0 0 unknown 1 0.500231644189544 1 0.999536711620911 hm5C_site_9091 DeepMRMD:1;iRNA_m5C:0.999536711620911 9092 chr6 27586186 27586186 1 + G A rs553749591 27586168 + 27586148 27586188 41 AGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTGAG AGCGGTTGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTAAG < 41bp 1 0.485998765935944 1 0.266800045967102 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586168 chr6:27586186 . . 0 39 hm5C_associated_SNPs_6271 0 0 1 0 0 unknown 1 0.500230305874001 1 0.999539388251997 hm5C_site_9092 DeepMRMD:1;iRNA_m5C:0.999539388251997 9093 chr6 27586186 27586186 1 + G A rs553749591 27586174 + 27586154 27586194 41 TGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTGAGTTCAAA TGGAGCGCTGGTCTCGTAAACCTAGGGGTCGTAAGTTCAAA < 41bp 1 0.152304183232028 1 0.345542371273041 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586174 chr6:27586186 . . 0 33 hm5C_associated_SNPs_6272 0 0 1 0 0 unknown 1 0.500231513531404 1 0.999536972937192 hm5C_site_9093 DeepMRMD:1;iRNA_m5C:0.999536972937192 9094 chr6 27586186 27586186 1 + G A rs553749591 27586183 + 27586163 27586203 41 GGTCTCGTAAACCTAGGGGTCGTGAGTTCAAATCTCACCAG GGTCTCGTAAACCTAGGGGTCGTAAGTTCAAATCTCACCAG < 41bp 1 0.622820363197463 1 0.228788405656815 experiment 0.754359273605074 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000206671;ENSG00000238648 intergenic Human other chr6:27586183 chr6:27586186 . . 0 24 hm5C_associated_SNPs_6274 0 0 1 0 0 unknown 1 0.50023164392109 1 0.999536712157821 hm5C_site_9094 DeepMRMD:1;iRNA_m5C:0.999536712157821 9095 chr6 27599288 27599288 1 + G A rs575300768 27599280 + 27599260 27599300 41 GCCGAGGTTGTGAGTTCGAGCCTCACCTGGAGCATGTTTTC GCCGAGGTTGTGAGTTCGAGCCTCACCTAGAGCATGTTTTC < 41bp 1 0.10445719066742 1 0.0360164046287537 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF184;LINC01012 ENSG00000238648 ncRNA_exonic Human other chr6:27599280 chr6:27599288 . . 0 29 hm5C_associated_SNPs_6275 0 0 1 0 0 unknown 1 0.500231644252091 1 0.999536711495819 hm5C_site_9095 DeepMRMD:1;iRNA_m5C:0.999536711495819 9096 chr6 27599290 27599290 1 + A C rs189697993 27599280 + 27599260 27599300 41 GCCGAGGTTGTGAGTTCGAGCCTCACCTGGAGCATGTTTTC GCCGAGGTTGTGAGTTCGAGCCTCACCTGGCGCATGTTTTC < 41bp 1 0.109001892440425 1 0.0350701212882996 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF184;LINC01012 ENSG00000238648 ncRNA_exonic Human other chr6:27599280 chr6:27599290 . . 0 31 hm5C_associated_SNPs_6276 0 0 1 0 0 unknown 1 0.500231643928444 1 0.999536712143112 hm5C_site_9096 DeepMRMD:1;iRNA_m5C:0.999536712143112 9097 chr6 27636378 27636378 1 + C A rs78149975 27636372 + 27636352 27636392 41 GCATTCGTGTGGCCGGTTAGCTCAGTCGGCTAGAGCGTGGT GCATTCGTGTGGCCGGTTAGCTCAGTAGGCTAGAGCGTGGT < 41bp 1 0.590497914729722 1 0.0772571265697479 experiment 0.819004170540557 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27636372 chr6:27636378 . . 0 27 hm5C_associated_SNPs_6277 0 0 1 0 0 unknown 1 0.500231643921043 1 0.999536712157913 hm5C_site_9097 DeepMRMD:1;iRNA_m5C:0.999536712157913 9098 chr6 27636387 27636387 1 + C T rs149096466 27636372 + 27636352 27636392 41 GCATTCGTGTGGCCGGTTAGCTCAGTCGGCTAGAGCGTGGT GCATTCGTGTGGCCGGTTAGCTCAGTCGGCTAGAGTGTGGT < 41bp 1 0.490926608567119 1 0.139976680278778 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27636372 chr6:27636387 . . 0 36 hm5C_associated_SNPs_6279 0 0 1 0 0 unknown 1 0.5002316438457 1 0.999536712308599 hm5C_site_9098 DeepMRMD:1;iRNA_m5C:0.999536712308599 9099 chr6 27636387 27636387 1 + C T rs149096466 27636374 + 27636354 27636394 41 ATTCGTGTGGCCGGTTAGCTCAGTCGGCTAGAGCGTGGTGC ATTCGTGTGGCCGGTTAGCTCAGTCGGCTAGAGTGTGGTGC < 41bp 1 0.43567970322438 1 0.263248920440674 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27636374 chr6:27636387 . . 0 34 hm5C_associated_SNPs_6280 0 0 1 0 0 unknown 1 0.500231643921145 1 0.99953671215771 hm5C_site_9099 DeepMRMD:1;iRNA_m5C:0.99953671215771 9100 chr6 27636410 27636410 1 + C A rs113533199 27636418 + 27636398 27636438 41 TAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCACTG TAACGCCAAGGTAGCGGGTTCGATCCCCGTACGGGCCACTG < 41bp 1 0.171632656182913 1 0.112334102392197 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27636418 chr6:27636410 . . 0 13 hm5C_associated_SNPs_6283 0 0 1 0 0 unknown 1 0.500231643921128 1 0.999536712157743 hm5C_site_9100 DeepMRMD:1;iRNA_m5C:0.999536712157743 9101 chr6 27636410 27636410 1 + C A rs113533199 27636423 + 27636403 27636443 41 CCAAGGTCGCGGGTTCGATCCCCGTACGGGCCACTGGATGC CCAAGGTAGCGGGTTCGATCCCCGTACGGGCCACTGGATGC < 41bp 1 0.522641419333052 1 0.488062173128128 experiment 0.954717161333897 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27636423 chr6:27636410 . . 0 8 hm5C_associated_SNPs_6284 0 0 1 0 0 unknown 1 0.500231643921268 1 0.999536712157465 hm5C_site_9101 DeepMRMD:1;iRNA_m5C:0.999536712157465 9102 chr6 27636410 27636410 1 + C A rs113533199 27636424 + 27636404 27636444 41 CAAGGTCGCGGGTTCGATCCCCGTACGGGCCACTGGATGCC CAAGGTAGCGGGTTCGATCCCCGTACGGGCCACTGGATGCC < 41bp 1 0.52651353361453 1 0.390377104282379 experiment 0.94697293277094 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27636424 chr6:27636410 . . 0 7 hm5C_associated_SNPs_6285 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_9102 DeepMRMD:1;iRNA_m5C:0.999536712157818 9103 chr6 27636410 27636410 1 + C A rs113533199 27636425 + 27636405 27636445 41 AAGGTCGCGGGTTCGATCCCCGTACGGGCCACTGGATGCCA AAGGTAGCGGGTTCGATCCCCGTACGGGCCACTGGATGCCA < 41bp 1 0.202995700791915 1 0.256679534912109 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27636425 chr6:27636410 . . 0 6 hm5C_associated_SNPs_6286 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9103 DeepMRMD:1;iRNA_m5C:0.999536712157815 9104 chr6 27655967 27655967 1 + G A rs183382877 27655969 + 27655949 27655989 41 TAAGGCATCCTGTCATCCGGCCGGTTAGCTCAGTTGGTTAG TAAGGCATCCTGTCATCCAGCCGGTTAGCTCAGTTGGTTAG < 41bp 1 0.325395447332571 1 0.230339854955673 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27655969 chr6:27655967 . . 0 19 hm5C_associated_SNPs_6287 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9104 DeepMRMD:1;iRNA_m5C:0.999536712157815 9105 chr6 27655967 27655967 1 + G A rs183382877 27655970 + 27655950 27655990 41 AAGGCATCCTGTCATCCGGCCGGTTAGCTCAGTTGGTTAGA AAGGCATCCTGTCATCCAGCCGGTTAGCTCAGTTGGTTAGA < 41bp 1 0.115942197171117 1 0.0896208584308624 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27655970 chr6:27655967 . . 0 18 hm5C_associated_SNPs_6288 0 0 1 0 0 unknown 1 0.500231624431927 1 0.999536751136145 hm5C_site_9105 DeepMRMD:1;iRNA_m5C:0.999536751136145 9106 chr6 27655994 27655994 1 + T G rs1555021 27655999 + 27655979 27656019 41 CAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGG CAGTTGGTTAGAGCGGGGTGCTAATAACGCCAAGGTCGCGG < 41bp 1 0.197484810069807 1 0.0841743648052216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27655999 chr6:27655994 . . 0 16 hm5C_associated_SNPs_6289 0 1 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9106 DeepMRMD:1;iRNA_m5C:0.999536712157815 9107 chr6 27655994 27655994 1 + T G rs1555021 27656009 + 27655989 27656029 41 GAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCC GAGCGGGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCC < 41bp 1 0.673086726274194 1 0.468200117349625 experiment 0.653826547451611 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27656009 chr6:27655994 . . 0 6 hm5C_associated_SNPs_6290 0 1 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9107 DeepMRMD:1;iRNA_m5C:0.999536712157815 9108 chr6 27656020 27656020 1 + G A rs146043275 27656009 + 27655989 27656029 41 GAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCC GAGCGTGGTGCTAATAACGCCAAGGTCGCGGATTCGATCCC < 41bp 1 0.619540532826609 1 0.469555675983429 experiment 0.760918934346782 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF184;LINC01012 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27656009 chr6:27656020 . . 0 32 hm5C_associated_SNPs_6291 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157813 hm5C_site_9108 DeepMRMD:1;iRNA_m5C:0.999536712157813 9109 chr6 27694478 27694478 1 + C G rs146833109 27694483 + 27694463 27694503 41 ACACAGGTGAGGCTTCGTGGCTTAGCTGGTTAAAGCGCCTG ACACAGGTGAGGCTTGGTGGCTTAGCTGGTTAAAGCGCCTG < 41bp 1 0.20454296314786 1 0.0869520902633667 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01012;LOC100131289 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27694483 chr6:27694478 . . 0 16 hm5C_associated_SNPs_6292 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9109 DeepMRMD:1;iRNA_m5C:0.999536712157815 9110 chr6 27694478 27694478 1 + C G rs146833109 27694498 + 27694478 27694518 41 CGTGGCTTAGCTGGTTAAAGCGCCTGTCTAGTAAACAGGAG GGTGGCTTAGCTGGTTAAAGCGCCTGTCTAGTAAACAGGAG < 41bp 1 0.613995755664146 1 0.307756930589676 experiment 0.772008488671708 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01012;LOC100131289 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27694498 chr6:27694478 . . 0 1 hm5C_associated_SNPs_6293 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9110 DeepMRMD:1;iRNA_m5C:0.999536712157815 9111 chr6 27694498 27694498 1 + C A rs547002854 27694483 + 27694463 27694503 41 ACACAGGTGAGGCTTCGTGGCTTAGCTGGTTAAAGCGCCTG ACACAGGTGAGGCTTCGTGGCTTAGCTGGTTAAAGAGCCTG < 41bp 1 0.137189688501011 1 0.0681231915950775 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01012;LOC100131289 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27694483 chr6:27694498 . . 0 36 hm5C_associated_SNPs_6294 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9111 DeepMRMD:1;iRNA_m5C:0.999536712157815 9112 chr6 27694498 27694498 1 + C A rs547002854 27694500 + 27694480 27694520 41 TGGCTTAGCTGGTTAAAGCGCCTGTCTAGTAAACAGGAGAT TGGCTTAGCTGGTTAAAGAGCCTGTCTAGTAAACAGGAGAT < 41bp 1 0.120349459821042 1 0.11194035410881 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01012;LOC100131289 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27694500 chr6:27694498 . . 0 19 hm5C_associated_SNPs_6295 0 0 1 0 0 unknown 1 0.500231643921079 1 0.999536712157842 hm5C_site_9112 DeepMRMD:1;iRNA_m5C:0.999536712157842 9113 chr6 27694498 27694498 1 + C A rs547002854 27694501 + 27694481 27694521 41 GGCTTAGCTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATC GGCTTAGCTGGTTAAAGAGCCTGTCTAGTAAACAGGAGATC < 41bp 1 0.0956966543168074 1 0.0818759500980377 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01012;LOC100131289 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27694501 chr6:27694498 . . 0 18 hm5C_associated_SNPs_6296 0 0 1 0 0 unknown 1 0.500231744344484 1 0.999536511311032 hm5C_site_9113 DeepMRMD:1;iRNA_m5C:0.999536511311032 9114 chr6 27694498 27694498 1 + C A rs547002854 27694505 + 27694485 27694525 41 TAGCTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCCTGG TAGCTGGTTAAAGAGCCTGTCTAGTAAACAGGAGATCCTGG < 41bp 1 0.282934012885749 1 0.19476392865181 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01012;LOC100131289 ENSG00000216676;ENSG00000216915 intergenic Human other chr6:27694505 chr6:27694498 . . 0 14 hm5C_associated_SNPs_6297 0 0 1 0 0 unknown 1 0.500231643922901 1 0.999536712154197 hm5C_site_9114 DeepMRMD:1;iRNA_m5C:0.999536712154197 9115 chr6 27745685 27745685 1 + C A rs192640550 27745674 + 27745654 27745694 41 GTTTTCCGTTAGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC GTTTTCCGTTAGCAGAGTGGCGCAGCGGAAGAGTGCTGGGC < 41bp 1 0.445908750086599 1 0.270045399665833 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745674 chr6:27745685 . . 0 32 hm5C_associated_SNPs_6298 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9115 DeepMRMD:1;iRNA_m5C:0.999536712157815 9116 chr6 27745685 27745685 1 + C A rs192640550 27745694 + 27745674 27745714 41 CGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATG CGCAGCGGAAGAGTGCTGGGCCCATAACCCAGAGGTCGATG < 41bp 1 0.0852339639013548 1 0.0106645524501801 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|30526041;GSE122413;RNA-BisSeq;HEK293;Control|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745694 chr6:27745685 . . 0 12 hm5C_associated_SNPs_6300 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9116 DeepMRMD:1;iRNA_m5C:0.999536712157815 9117 chr6 27745685 27745685 1 + C A rs192640550 27745695 + 27745675 27745715 41 GCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGG GCAGCGGAAGAGTGCTGGGCCCATAACCCAGAGGTCGATGG < 41bp 1 0.20606312853648 1 0.0224739909172058 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745695 chr6:27745685 . . 0 11 hm5C_associated_SNPs_6301 0 0 1 0 0 unknown 1 0.500231643921067 1 0.999536712157866 hm5C_site_9117 DeepMRMD:1;iRNA_m5C:0.999536712157866 9118 chr6 27745685 27745685 1 + C A rs192640550 27745696 + 27745676 27745716 41 CAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGA CAGCGGAAGAGTGCTGGGCCCATAACCCAGAGGTCGATGGA < 41bp 1 0.328618226026477 1 0.0543208420276642 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745696 chr6:27745685 . . 0 10 hm5C_associated_SNPs_6302 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9118 DeepMRMD:1;iRNA_m5C:0.999536712157815 9119 chr6 27745685 27745685 1 + C A rs192640550 27745701 + 27745681 27745721 41 GAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCTAA GAAGAGTGCTGGGCCCATAACCCAGAGGTCGATGGATCTAA < 41bp 1 0.366380042409639 1 0.5678391456604 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745701 chr6:27745685 . . 0 5 hm5C_associated_SNPs_6303 0 0 1 0 0 unknown 1 0.500231643921092 0.8643217086792 0.999536712157815 hm5C_site_9119 DeepMRMD:0.8643217086792;iRNA_m5C:0.999536712157815 9120 chr6 27745685 27745685 1 + C A rs192640550 27745702 + 27745682 27745722 41 AAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCTAAA AAGAGTGCTGGGCCCATAACCCAGAGGTCGATGGATCTAAA < 41bp 1 0.602155477288666 1 0.897356450557709 experiment 0.795689045422667 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745702 chr6:27745685 . . 0 4 hm5C_associated_SNPs_6304 0 0 1 0 0 unknown 1 0.500231644462619 0.205287098884582 0.999536711074761 hm5C_site_9120 DeepMRMD:0.205287098884582;iRNA_m5C:0.999536711074761 9121 chr6 27745714 27745714 1 + G A rs6920477 27745694 + 27745674 27745714 41 CGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATG CGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATA < 41bp 1 0.0957397112052388 1 0.0193001329898834 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|30526041;GSE122413;RNA-BisSeq;HEK293;Control|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745694 chr6:27745714 . . 0 41 hm5C_associated_SNPs_6306 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9121 DeepMRMD:1;iRNA_m5C:0.999536712157815 9122 chr6 27745714 27745714 1 + G A rs6920477 27745695 + 27745675 27745715 41 GCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGG GCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATAG < 41bp 1 0.221829235782073 1 0.0190424621105194 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745695 chr6:27745714 . . 0 40 hm5C_associated_SNPs_6307 0 0 1 0 0 unknown 1 0.500231643927009 1 0.999536712145983 hm5C_site_9122 DeepMRMD:1;iRNA_m5C:0.999536712145983 9123 chr6 27745714 27745714 1 + G A rs6920477 27745696 + 27745676 27745716 41 CAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGA CAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATAGA < 41bp 1 0.317175378861493 1 0.0418786406517029 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745696 chr6:27745714 . . 0 39 hm5C_associated_SNPs_6308 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9123 DeepMRMD:1;iRNA_m5C:0.999536712157815 9124 chr6 27745714 27745714 1 + G A rs6920477 27745701 + 27745681 27745721 41 GAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCTAA GAAGCGTGCTGGGCCCATAACCCAGAGGTCGATAGATCTAA < 41bp 1 0.333389279832503 1 0.462656497955322 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745701 chr6:27745714 . . 0 34 hm5C_associated_SNPs_6309 0 0 1 0 0 unknown 1 0.500231643958954 1 0.999536712082092 hm5C_site_9124 DeepMRMD:1;iRNA_m5C:0.999536712082092 9125 chr6 27745714 27745714 1 + G A rs6920477 27745702 + 27745682 27745722 41 AAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCTAAA AAGCGTGCTGGGCCCATAACCCAGAGGTCGATAGATCTAAA < 41bp 1 0.622944080455666 1 0.868396520614624 experiment 0.754111839088668 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745702 chr6:27745714 . . 0 33 hm5C_associated_SNPs_6310 0 0 1 0 0 unknown 1 0.500231643931056 0.263206958770752 0.999536712137888 hm5C_site_9125 DeepMRMD:0.263206958770752;iRNA_m5C:0.999536712137888 9126 chr6 27745714 27745714 1 + G A rs6920477 27745710 + 27745690 27745730 41 TGGGCCCATAACCCAGAGGTCGATGGATCTAAACCATCCTC TGGGCCCATAACCCAGAGGTCGATAGATCTAAACCATCCTC < 41bp 1 0.421543454894789 1 0.226655304431915 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745710 chr6:27745714 . . 0 25 hm5C_associated_SNPs_6312 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9126 DeepMRMD:1;iRNA_m5C:0.999536712157815 9127 chr6 27745714 27745714 1 + G A rs6920477 27745718 + 27745698 27745738 41 TAACCCAGAGGTCGATGGATCTAAACCATCCTCTGCTAAAG TAACCCAGAGGTCGATAGATCTAAACCATCCTCTGCTAAAG < 41bp 1 0.523914645824497 1 0.763222098350525 experiment 0.952170708351006 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745718 chr6:27745714 . . 0 17 hm5C_associated_SNPs_6313 0 0 1 0 0 unknown 1 0.500231643921432 0.47355580329895 0.999536712157137 hm5C_site_9127 DeepMRMD:0.47355580329895;iRNA_m5C:0.999536712157137 9128 chr6 27745714 27745714 1 + G A rs6920477 27745723 + 27745703 27745743 41 CAGAGGTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGG CAGAGGTCGATAGATCTAAACCATCCTCTGCTAAAGAAGGG < 41bp 1 0.025257175839414 1 0.137723922729492 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745723 chr6:27745714 . . 0 12 hm5C_associated_SNPs_6314 0 0 1 0 0 unknown 1 0.500231654282875 1 0.99953669143425 hm5C_site_9128 DeepMRMD:1;iRNA_m5C:0.99953669143425 9129 chr6 27745714 27745714 1 + G A rs6920477 27745724 + 27745704 27745744 41 AGAGGTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGGT AGAGGTCGATAGATCTAAACCATCCTCTGCTAAAGAAGGGT < 41bp 1 0.0671212921989341 1 0.271651059389114 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745724 chr6:27745714 . . 0 11 hm5C_associated_SNPs_6315 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_9129 DeepMRMD:1;iRNA_m5C:0.999536712157814 9130 chr6 27745714 27745714 1 + G A rs6920477 27745728 + 27745708 27745748 41 GTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGGTGCTT GTCGATAGATCTAAACCATCCTCTGCTAAAGAAGGGTGCTT < 41bp 1 0.190147364730902 1 0.0655748248100281 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745728 chr6:27745714 . . 0 7 hm5C_associated_SNPs_6316 0 0 1 0 0 unknown 1 0.50023164392084 1 0.999536712158321 hm5C_site_9130 DeepMRMD:1;iRNA_m5C:0.999536712158321 9131 chr6 27745715 27745715 1 + G A rs188010313 27745695 + 27745675 27745715 41 GCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGG GCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGA < 41bp 1 0.202290687215579 1 0.0240503549575806 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745695 chr6:27745715 . . 0 41 hm5C_associated_SNPs_6317 0 0 1 0 0 unknown 1 0.500231643920919 1 0.999536712158163 hm5C_site_9131 DeepMRMD:1;iRNA_m5C:0.999536712158163 9132 chr6 27745715 27745715 1 + G A rs188010313 27745696 + 27745676 27745716 41 CAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGA CAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGAA < 41bp 1 0.364368871983618 1 0.0572506189346313 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745696 chr6:27745715 . . 0 40 hm5C_associated_SNPs_6318 0 0 1 0 0 unknown 1 0.500231643919079 1 0.999536712161842 hm5C_site_9132 DeepMRMD:1;iRNA_m5C:0.999536712161842 9133 chr6 27745715 27745715 1 + G A rs188010313 27745701 + 27745681 27745721 41 GAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCTAA GAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGAATCTAA < 41bp 1 0.326459993267794 1 0.460090070962906 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745701 chr6:27745715 . . 0 35 hm5C_associated_SNPs_6319 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9133 DeepMRMD:1;iRNA_m5C:0.999536712157815 9134 chr6 27745715 27745715 1 + G A rs188010313 27745702 + 27745682 27745722 41 AAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCTAAA AAGCGTGCTGGGCCCATAACCCAGAGGTCGATGAATCTAAA < 41bp 1 0.591511586097252 1 0.866820573806763 experiment 0.816976827805495 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745702 chr6:27745715 . . 0 34 hm5C_associated_SNPs_6320 0 0 1 0 0 unknown 1 0.500231643921082 0.266358852386474 0.999536712157835 hm5C_site_9134 DeepMRMD:0.266358852386474;iRNA_m5C:0.999536712157835 9135 chr6 27745715 27745715 1 + G A rs188010313 27745710 + 27745690 27745730 41 TGGGCCCATAACCCAGAGGTCGATGGATCTAAACCATCCTC TGGGCCCATAACCCAGAGGTCGATGAATCTAAACCATCCTC < 41bp 1 0.267976508914793 1 0.186168432235718 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745710 chr6:27745715 . . 0 26 hm5C_associated_SNPs_6322 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_9135 DeepMRMD:1;iRNA_m5C:0.999536712157816 9136 chr6 27745715 27745715 1 + G A rs188010313 27745718 + 27745698 27745738 41 TAACCCAGAGGTCGATGGATCTAAACCATCCTCTGCTAAAG TAACCCAGAGGTCGATGAATCTAAACCATCCTCTGCTAAAG < 41bp 1 0.558668878304486 1 0.735141634941101 experiment 0.882662243391029 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745718 chr6:27745715 . . 0 18 hm5C_associated_SNPs_6323 0 0 1 0 0 unknown 1 0.500231643921092 0.529716730117798 0.999536712157815 hm5C_site_9136 DeepMRMD:0.529716730117798;iRNA_m5C:0.999536712157815 9137 chr6 27745715 27745715 1 + G A rs188010313 27745723 + 27745703 27745743 41 CAGAGGTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGG CAGAGGTCGATGAATCTAAACCATCCTCTGCTAAAGAAGGG < 41bp 1 0.0230959582190309 1 0.113495528697968 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745723 chr6:27745715 . . 0 13 hm5C_associated_SNPs_6324 0 0 1 0 0 unknown 1 0.500232154246291 1 0.999535691507417 hm5C_site_9137 DeepMRMD:1;iRNA_m5C:0.999535691507417 9138 chr6 27745715 27745715 1 + G A rs188010313 27745724 + 27745704 27745744 41 AGAGGTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGGT AGAGGTCGATGAATCTAAACCATCCTCTGCTAAAGAAGGGT < 41bp 1 0.0584021295214739 1 0.244576334953308 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745724 chr6:27745715 . . 0 12 hm5C_associated_SNPs_6325 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9138 DeepMRMD:1;iRNA_m5C:0.999536712157815 9139 chr6 27745715 27745715 1 + G A rs188010313 27745728 + 27745708 27745748 41 GTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGGTGCTT GTCGATGAATCTAAACCATCCTCTGCTAAAGAAGGGTGCTT < 41bp 1 0.15129617588821 1 0.0592441260814667 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745728 chr6:27745715 . . 0 8 hm5C_associated_SNPs_6326 0 0 1 0 0 unknown 1 0.500231643915632 1 0.999536712168735 hm5C_site_9139 DeepMRMD:1;iRNA_m5C:0.999536712168735 9140 chr6 27745718 27745718 1 + C G rs537629280 27745701 + 27745681 27745721 41 GAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCTAA GAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATGTAA < 41bp 1 0.344605428378846 1 0.448969185352325 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745701 chr6:27745718 . . 0 38 hm5C_associated_SNPs_6327 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9140 DeepMRMD:1;iRNA_m5C:0.999536712157815 9141 chr6 27745718 27745718 1 + C G rs537629280 27745702 + 27745682 27745722 41 AAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCTAAA AAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATGTAAA < 41bp 1 0.615135781352712 1 0.875723361968994 experiment 0.769728437294576 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745702 chr6:27745718 . . 0 37 hm5C_associated_SNPs_6328 0 0 1 0 0 unknown 1 0.500231643952691 0.248553276062012 0.999536712094618 hm5C_site_9141 DeepMRMD:0.248553276062012;iRNA_m5C:0.999536712094618 9142 chr6 27745718 27745718 1 + C G rs537629280 27745710 + 27745690 27745730 41 TGGGCCCATAACCCAGAGGTCGATGGATCTAAACCATCCTC TGGGCCCATAACCCAGAGGTCGATGGATGTAAACCATCCTC < 41bp 1 0.351255814964501 1 0.321437329053879 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745710 chr6:27745718 . . 0 29 hm5C_associated_SNPs_6330 0 0 1 0 0 unknown 1 0.500231643921127 1 0.999536712157747 hm5C_site_9142 DeepMRMD:1;iRNA_m5C:0.999536712157747 9143 chr6 27745718 27745718 1 + C G rs537629280 27745723 + 27745703 27745743 41 CAGAGGTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGG CAGAGGTCGATGGATGTAAACCATCCTCTGCTAAAGAAGGG < 41bp 1 0.0382905288118352 1 0.179834097623825 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745723 chr6:27745718 . . 0 16 hm5C_associated_SNPs_6331 0 0 1 0 0 unknown 1 0.500231643969896 1 0.999536712060207 hm5C_site_9143 DeepMRMD:1;iRNA_m5C:0.999536712060207 9144 chr6 27745718 27745718 1 + C G rs537629280 27745724 + 27745704 27745744 41 AGAGGTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGGT AGAGGTCGATGGATGTAAACCATCCTCTGCTAAAGAAGGGT < 41bp 1 0.0719138303888424 1 0.381384968757629 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745724 chr6:27745718 . . 0 15 hm5C_associated_SNPs_6332 0 0 1 0 0 unknown 1 0.500231643921244 1 0.999536712157512 hm5C_site_9144 DeepMRMD:1;iRNA_m5C:0.999536712157512 9145 chr6 27745718 27745718 1 + C G rs537629280 27745728 + 27745708 27745748 41 GTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGGTGCTT GTCGATGGATGTAAACCATCCTCTGCTAAAGAAGGGTGCTT < 41bp 1 0.185386750497621 1 0.0418024659156799 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745728 chr6:27745718 . . 0 11 hm5C_associated_SNPs_6333 0 0 1 0 0 unknown 1 0.500231643883688 1 0.999536712232623 hm5C_site_9145 DeepMRMD:1;iRNA_m5C:0.999536712232623 9146 chr6 27745719 27745719 1 + T A rs9468225 27745701 + 27745681 27745721 41 GAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCTAA GAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCAAA < 41bp 1 0.3119860519993 1 0.464213848114014 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745701 chr6:27745719 . . 0 39 hm5C_associated_SNPs_6334 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9146 DeepMRMD:1;iRNA_m5C:0.999536712157815 9147 chr6 27745719 27745719 1 + T A rs9468225 27745702 + 27745682 27745722 41 AAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCTAAA AAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCAAAA < 41bp 1 0.638224034451165 1 0.838119387626648 experiment 0.723551931097669 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745702 chr6:27745719 . . 0 38 hm5C_associated_SNPs_6335 0 0 1 0 0 unknown 1 0.500231653897083 0.323761224746704 0.999536692205834 hm5C_site_9147 DeepMRMD:0.323761224746704;iRNA_m5C:0.999536692205834 9148 chr6 27745719 27745719 1 + T A rs9468225 27745710 + 27745690 27745730 41 TGGGCCCATAACCCAGAGGTCGATGGATCTAAACCATCCTC TGGGCCCATAACCCAGAGGTCGATGGATCAAAACCATCCTC < 41bp 1 0.359721296640355 1 0.427184402942657 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745710 chr6:27745719 . . 0 30 hm5C_associated_SNPs_6337 0 0 1 0 0 unknown 1 0.500231643921142 1 0.999536712157716 hm5C_site_9148 DeepMRMD:1;iRNA_m5C:0.999536712157716 9149 chr6 27745719 27745719 1 + T A rs9468225 27745718 + 27745698 27745738 41 TAACCCAGAGGTCGATGGATCTAAACCATCCTCTGCTAAAG TAACCCAGAGGTCGATGGATCAAAACCATCCTCTGCTAAAG < 41bp 1 0.511559568122707 1 0.665461301803589 experiment 0.976880863754587 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745718 chr6:27745719 . . 0 22 hm5C_associated_SNPs_6338 0 0 1 0 0 unknown 1 0.500231643921092 0.669077396392822 0.999536712157815 hm5C_site_9149 DeepMRMD:0.669077396392822;iRNA_m5C:0.999536712157815 9150 chr6 27745719 27745719 1 + T A rs9468225 27745723 + 27745703 27745743 41 CAGAGGTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGG CAGAGGTCGATGGATCAAAACCATCCTCTGCTAAAGAAGGG < 41bp 1 0.0305290855459603 1 0.10982820391655 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745723 chr6:27745719 . . 0 17 hm5C_associated_SNPs_6339 0 0 1 0 0 unknown 1 0.50023164907977 1 0.999536701840459 hm5C_site_9150 DeepMRMD:1;iRNA_m5C:0.999536701840459 9151 chr6 27745719 27745719 1 + T A rs9468225 27745724 + 27745704 27745744 41 AGAGGTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGGT AGAGGTCGATGGATCAAAACCATCCTCTGCTAAAGAAGGGT < 41bp 1 0.0724941929860395 1 0.288740217685699 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745724 chr6:27745719 . . 0 16 hm5C_associated_SNPs_6340 0 0 1 0 0 unknown 1 0.500231643921105 1 0.99953671215779 hm5C_site_9151 DeepMRMD:1;iRNA_m5C:0.99953671215779 9152 chr6 27745719 27745719 1 + T A rs9468225 27745728 + 27745708 27745748 41 GTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGGTGCTT GTCGATGGATCAAAACCATCCTCTGCTAAAGAAGGGTGCTT < 41bp 1 0.1718907424982 1 0.0980135500431061 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745728 chr6:27745719 . . 0 12 hm5C_associated_SNPs_6341 0 0 1 0 0 unknown 1 0.500231643890903 1 0.999536712218194 hm5C_site_9152 DeepMRMD:1;iRNA_m5C:0.999536712218194 9153 chr6 27745727 27745727 1 + C T rs574335983 27745710 + 27745690 27745730 41 TGGGCCCATAACCCAGAGGTCGATGGATCTAAACCATCCTC TGGGCCCATAACCCAGAGGTCGATGGATCTAAACCATTCTC < 41bp 1 0.290902143520007 1 0.259082496166229 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745710 chr6:27745727 . . 0 38 hm5C_associated_SNPs_6342 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9153 DeepMRMD:1;iRNA_m5C:0.999536712157815 9154 chr6 27745727 27745727 1 + C T rs574335983 27745718 + 27745698 27745738 41 TAACCCAGAGGTCGATGGATCTAAACCATCCTCTGCTAAAG TAACCCAGAGGTCGATGGATCTAAACCATTCTCTGCTAAAG < 41bp 1 0.434248833654346 1 0.45482537150383 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745718 chr6:27745727 . . 0 30 hm5C_associated_SNPs_6343 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_9154 DeepMRMD:1;iRNA_m5C:0.999536712157816 9155 chr6 27745727 27745727 1 + C T rs574335983 27745723 + 27745703 27745743 41 CAGAGGTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGG CAGAGGTCGATGGATCTAAACCATTCTCTGCTAAAGAAGGG < 41bp 1 0.0439756611395617 1 0.0850816965103149 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|27356879;GSE66010;miCLIP;HEK293;Control LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745723 chr6:27745727 . . 0 25 hm5C_associated_SNPs_6344 0 0 1 0 0 unknown 1 0.500231644215795 1 0.99953671156841 hm5C_site_9155 DeepMRMD:1;iRNA_m5C:0.99953671156841 9156 chr6 27745727 27745727 1 + C T rs574335983 27745724 + 27745704 27745744 41 AGAGGTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGGT AGAGGTCGATGGATCTAAACCATTCTCTGCTAAAGAAGGGT < 41bp 1 0.0334580646816716 1 0.159375488758087 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745724 chr6:27745727 . . 0 24 hm5C_associated_SNPs_6345 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9156 DeepMRMD:1;iRNA_m5C:0.999536712157815 9157 chr6 27745727 27745727 1 + C T rs574335983 27745728 + 27745708 27745748 41 GTCGATGGATCTAAACCATCCTCTGCTAAAGAAGGGTGCTT GTCGATGGATCTAAACCATTCTCTGCTAAAGAAGGGTGCTT < 41bp 1 0.204916903639821 1 0.0670203268527985 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC100131289;HIST1H2BL ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27745728 chr6:27745727 . . 0 20 hm5C_associated_SNPs_6346 0 0 1 0 0 unknown 1 0.500232062129628 1 0.999535875740745 hm5C_site_9157 DeepMRMD:1;iRNA_m5C:0.999535875740745 9158 chr6 27833342 27833342 1 + C T rs11966705 27833336 + 27833316 27833356 41 GAGATCCTGGAGCTGGCGGGCAACGCCGCCCGCGACAACAA GAGATCCTGGAGCTGGCGGGCAACGCTGCCCGCGACAACAA < 41bp 1 0.699065382846198 1 0.451244831085205 experiment 0.601869234307604 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AL ENSG00000198374 CDS Human other chr6:27833336 chr6:27833342 synonymous SNV . 0 27 hm5C_associated_SNPs_6347 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9158 DeepMRMD:1;iRNA_m5C:0.999536712157815 9159 chr6 27833342 27833342 1 + C T rs11966705 27833344 + 27833324 27833364 41 GGAGCTGGCGGGCAACGCCGCCCGCGACAACAAGAAGACCC GGAGCTGGCGGGCAACGCTGCCCGCGACAACAAGAAGACCC < 41bp 1 0.393279924068046 1 0.303021162748337 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AL ENSG00000198374 CDS Human other chr6:27833344 chr6:27833342 synonymous SNV . 0 19 hm5C_associated_SNPs_6348 0 0 1 0 0 exosome 1 0.500231642001634 1 0.999536715996733 hm5C_site_9159 DeepMRMD:1;iRNA_m5C:0.999536715996733 9160 chr6 27833342 27833342 1 + C T rs11966705 27833345 + 27833325 27833365 41 GAGCTGGCGGGCAACGCCGCCCGCGACAACAAGAAGACCCG GAGCTGGCGGGCAACGCTGCCCGCGACAACAAGAAGACCCG < 41bp 1 0.502767115239193 1 0.291322350502014 experiment 0.994465769521615 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AL ENSG00000198374 CDS Human other chr6:27833345 chr6:27833342 synonymous SNV . 0 18 hm5C_associated_SNPs_6349 0 0 1 0 0 exosome 1 0.500231643919202 1 0.999536712161597 hm5C_site_9160 DeepMRMD:1;iRNA_m5C:0.999536712161597 9161 chr6 27861263 27861263 1 + C T rs552783351 27861272 + 27861252 27861292 41 GGCTAAATCTGCTCCTGCCCCCAAAAAGGGCTCCAAGAAAG GGCTAAATCTGTTCCTGCCCCCAAAAAGGGCTCCAAGAAAG < 41bp 1 0.445438286490035 1 0.415820837020874 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIST1H2BO ENSG00000196331 CDS Human other chr6:27861272 chr6:27861263 nonsynonymous SNV 0.014 0 12 hm5C_associated_SNPs_6350 0 0 1 0 0 exosome 1 0.500231643918 1 0.999536712164001 hm5C_site_9161 DeepMRMD:1;iRNA_m5C:0.999536712164001 9162 chr6 28117381 28117381 1 + C T rs376655976 28117361 + 28117341 28117381 41 TCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGC TCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGT < 41bp 1 0.312218617580824 1 0.0608233511447906 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZKSCAN8 ENSG00000198315 CDS Human protein_coding chr6:28117361 chr6:28117381 nonsynonymous SNV 0.028 0 41 hm5C_associated_SNPs_6351 0 0 1 0 1 chromatin 1 0.500231643921139 1 0.999536712157722 hm5C_site_9162 DeepMRMD:1;iRNA_m5C:0.999536712157722 9163 chr6 28180818 28180818 1 + G C rs76094573 28180817 + 28180797 28180837 41 GTTGTTGATTCTTTGTGTGACGAGGTGGCCGAGTGGTTAAG GTTGTTGATTCTTTGTGTGACCAGGTGGCCGAGTGGTTAAG < 41bp 1 0.27075576695137 1 0.287992179393768 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180817 chr6:28180818 . . 0 22 hm5C_associated_SNPs_6352 0 0 1 0 0 unknown 1 0.500231623244421 1 0.999536753511158 hm5C_site_9163 DeepMRMD:1;iRNA_m5C:0.999536753511158 9164 chr6 28180818 28180818 1 + G C rs76094573 28180825 + 28180805 28180845 41 TTCTTTGTGTGACGAGGTGGCCGAGTGGTTAAGGCGATGGA TTCTTTGTGTGACCAGGTGGCCGAGTGGTTAAGGCGATGGA < 41bp 1 0.213280793204091 1 0.385778725147247 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180825 chr6:28180818 . . 0 14 hm5C_associated_SNPs_6353 0 0 1 0 0 unknown 1 0.500231643921513 1 0.999536712156973 hm5C_site_9164 DeepMRMD:1;iRNA_m5C:0.999536712156973 9165 chr6 28180818 28180818 1 + G C rs76094573 28180826 + 28180806 28180846 41 TCTTTGTGTGACGAGGTGGCCGAGTGGTTAAGGCGATGGAC TCTTTGTGTGACCAGGTGGCCGAGTGGTTAAGGCGATGGAC < 41bp 1 0.54541825122538 1 0.771895051002502 experiment 0.90916349754924 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180826 chr6:28180818 . . 0 13 hm5C_associated_SNPs_6354 0 0 1 0 0 unknown 1 0.500380678303427 0.456209897994996 0.999238643393147 hm5C_site_9165 DeepMRMD:0.456209897994996;iRNA_m5C:0.999238643393147 9166 chr6 28180870 28180870 1 + A C rs78966053 28180854 + 28180834 28180874 41 TAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACACGTG TAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACCCGTG < 41bp 1 0.155161001417065 1 0.257922202348709 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180854 chr6:28180870 . . 0 37 hm5C_associated_SNPs_6355 0 0 1 0 0 unknown 1 0.500230014023437 1 0.999539971953126 hm5C_site_9166 DeepMRMD:1;iRNA_m5C:0.999539971953126 9167 chr6 28180870 28180870 1 + A C rs78966053 28180855 + 28180835 28180875 41 AAGGCGATGGACTGCTAATCCATTGTGCTCTGCACACGTGG AAGGCGATGGACTGCTAATCCATTGTGCTCTGCACCCGTGG < 41bp 1 0.341001211730468 1 0.168320864439011 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180855 chr6:28180870 . . 0 36 hm5C_associated_SNPs_6356 0 0 1 0 0 unknown 1 0.500231643920739 1 0.999536712158521 hm5C_site_9167 DeepMRMD:1;iRNA_m5C:0.999536712158521 9168 chr6 28180870 28180870 1 + A C rs78966053 28180862 + 28180842 28180882 41 TGGACTGCTAATCCATTGTGCTCTGCACACGTGGGTTCGAA TGGACTGCTAATCCATTGTGCTCTGCACCCGTGGGTTCGAA < 41bp 1 0.169755194567874 1 0.122292041778564 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180862 chr6:28180870 . . 0 29 hm5C_associated_SNPs_6357 0 0 1 0 0 unknown 1 0.500231758495848 1 0.999536483008304 hm5C_site_9168 DeepMRMD:1;iRNA_m5C:0.999536483008304 9169 chr6 28180870 28180870 1 + A C rs78966053 28180864 + 28180844 28180884 41 GACTGCTAATCCATTGTGCTCTGCACACGTGGGTTCGAATC GACTGCTAATCCATTGTGCTCTGCACCCGTGGGTTCGAATC < 41bp 1 0.643812153957643 1 0.218161076307297 experiment 0.712375692084714 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180864 chr6:28180870 . . 0 27 hm5C_associated_SNPs_6358 0 0 1 0 0 unknown 1 0.500231643921725 1 0.99953671215655 hm5C_site_9169 DeepMRMD:1;iRNA_m5C:0.99953671215655 9170 chr6 28180870 28180870 1 + A C rs78966053 28180867 + 28180847 28180887 41 TGCTAATCCATTGTGCTCTGCACACGTGGGTTCGAATCCCA TGCTAATCCATTGTGCTCTGCACCCGTGGGTTCGAATCCCA < 41bp 1 0.221312066809947 1 0.0104866921901703 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180867 chr6:28180870 . . 0 24 hm5C_associated_SNPs_6359 0 0 1 0 0 unknown 1 0.500231643911259 1 0.999536712177482 hm5C_site_9170 DeepMRMD:1;iRNA_m5C:0.999536712177482 9171 chr6 28180870 28180870 1 + A C rs78966053 28180879 + 28180859 28180899 41 GTGCTCTGCACACGTGGGTTCGAATCCCATCCTCGTCGGCT GTGCTCTGCACCCGTGGGTTCGAATCCCATCCTCGTCGGCT < 41bp 1 0.172099626829591 1 0.0824550688266754 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180879 chr6:28180870 . . 0 12 hm5C_associated_SNPs_6361 0 0 1 0 0 unknown 1 0.500231643920772 1 0.999536712158455 hm5C_site_9171 DeepMRMD:1;iRNA_m5C:0.999536712158455 9172 chr6 28180870 28180870 1 + A C rs78966053 28180884 + 28180864 28180904 41 CTGCACACGTGGGTTCGAATCCCATCCTCGTCGGCTGCATA CTGCACCCGTGGGTTCGAATCCCATCCTCGTCGGCTGCATA < 41bp 1 0.0921556445437628 1 0.0978614389896393 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180884 chr6:28180870 . . 0 7 hm5C_associated_SNPs_6362 0 0 1 0 0 unknown 1 0.500231705162384 1 0.999536589675233 hm5C_site_9172 DeepMRMD:1;iRNA_m5C:0.999536589675233 9173 chr6 28180870 28180870 1 + A C rs78966053 28180885 + 28180865 28180905 41 TGCACACGTGGGTTCGAATCCCATCCTCGTCGGCTGCATAG TGCACCCGTGGGTTCGAATCCCATCCTCGTCGGCTGCATAG < 41bp 1 0.0743185036378397 1 0.124717205762863 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180885 chr6:28180870 . . 0 6 hm5C_associated_SNPs_6363 0 0 1 0 0 unknown 1 0.500231643879869 1 0.999536712240262 hm5C_site_9173 DeepMRMD:1;iRNA_m5C:0.999536712240262 Medication use (agents acting on the renin-angiotensin system) 9174 chr6 28180870 28180870 1 + A C rs78966053 28180886 + 28180866 28180906 41 GCACACGTGGGTTCGAATCCCATCCTCGTCGGCTGCATAGC GCACCCGTGGGTTCGAATCCCATCCTCGTCGGCTGCATAGC < 41bp 1 0.133921218485836 1 0.0938081443309784 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180886 chr6:28180870 . . 0 5 hm5C_associated_SNPs_6364 0 0 1 0 0 unknown 1 0.500232942033861 1 0.999534115932277 hm5C_site_9174 DeepMRMD:1;iRNA_m5C:0.999534115932277 9175 chr6 28180870 28180870 1 + A C rs78966053 28180889 + 28180869 28180909 41 CACGTGGGTTCGAATCCCATCCTCGTCGGCTGCATAGCAAG CCCGTGGGTTCGAATCCCATCCTCGTCGGCTGCATAGCAAG < 41bp 1 0.0910230278033642 1 0.0701884925365448 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180889 chr6:28180870 . . 0 2 hm5C_associated_SNPs_6365 0 0 1 0 0 unknown 1 0.500231644030929 1 0.999536711938142 hm5C_site_9175 DeepMRMD:1;iRNA_m5C:0.999536711938142 9176 chr6 28180870 28180870 1 + A C rs78966053 28180890 + 28180870 28180910 41 ACGTGGGTTCGAATCCCATCCTCGTCGGCTGCATAGCAAGC CCGTGGGTTCGAATCCCATCCTCGTCGGCTGCATAGCAAGC < 41bp 1 0.308884452580903 1 0.29774409532547 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF192P1;TOB2P1 ENSG00000218016;ENSG00000176933 intergenic Human other chr6:28180890 chr6:28180870 . . 0 1 hm5C_associated_SNPs_6366 0 0 1 0 0 unknown 1 0.500231643921124 1 0.999536712157752 hm5C_site_9176 DeepMRMD:1;iRNA_m5C:0.999536712157752 9177 chr6 28239943 28239943 1 + G A rs11965542 28239937 + 28239917 28239957 41 GAGCTCTGTCAACAGTGCTACAGCCCGAGACCCATACCAAG GAGCTCTGTCAACAGTGCTACAGCCCAAGACCCATACCAAG < 41bp 1 0.249772538917797 1 0.509943783283234 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZSCAN26 ENSG00000197062 ncRNA_exonic Human protein_coding chr6:28239937 chr6:28239943 . 0.107 2 27 hm5C_associated_SNPs_6367 0 0 0 0 0 Cytosol 1 0.500231643821829 0.980112433433532 0.999536712356342 hm5C_site_9177 DeepMRMD:0.980112433433532;iRNA_m5C:0.999536712356342 9178 chr6 28249572 28249572 1 + C G rs560746538 28249567 + 28249547 28249587 41 CCGGTATTCAGTGCCTGGCGCGGTGCTAGATGCTGGGTGTA CCGGTATTCAGTGCCTGGCGCGGTGGTAGATGCTGGGTGTA < 41bp 1 0.522611932912096 1 0.735227465629578 experiment 0.954776134175808 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PGBD1 ENSG00000137338 UTR5 Human protein_coding chr6:28249567 chr6:28249572 . . 0 26 hm5C_associated_SNPs_6368 0 0 1 0 0 nucleoplasm 1 0.500231648016158 0.529545068740844 0.999536703967685 hm5C_site_9178 DeepMRMD:0.529545068740844;iRNA_m5C:0.999536703967685 9179 chr6 28333659 28333659 1 + A G rs61744865 28333663 + 28333643 28333683 41 TGTGATGACTGTGGGAAGACCTTCAGCCAGAGCTGCAGCCT TGTGATGACTGTGGGAGGACCTTCAGCCAGAGCTGCAGCCT < 41bp 1 0.659439552063882 1 0.214383602142334 experiment 0.681120895872235 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28333663 chr6:28333659 nonsynonymous SNV 0.997 3 17 hm5C_associated_SNPs_6369 0 0 0 0 0 exosome 1 0.500232391615212 1 0.999535216769577 hm5C_site_9179 DeepMRMD:1;iRNA_m5C:0.999535216769577 9180 chr6 28505460 28505460 1 + A C rs542039118 28505443 + 28505423 28505463 41 CAATGCCGAGGTTGTGAGTTCAAGCCTCACCTGGAGCAGTT CAATGCCGAGGTTGTGAGTTCAAGCCTCACCTGGAGCCGTT < 41bp 1 0.341956105637624 1 0.215550005435944 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target GPX5;ZBED9 ENSG00000224586;ENSG00000232040 intergenic Human other chr6:28505443 chr6:28505460 . . 0 38 hm5C_associated_SNPs_6370 0 0 1 0 0 unknown 1 0.500231643888174 1 0.999536712223653 hm5C_site_9180 DeepMRMD:1;iRNA_m5C:0.999536712223653 9181 chr6 28505460 28505460 1 + A C rs542039118 28505450 + 28505430 28505470 41 GAGGTTGTGAGTTCAAGCCTCACCTGGAGCAGTTTTACTAT GAGGTTGTGAGTTCAAGCCTCACCTGGAGCCGTTTTACTAT < 41bp 1 0.245799834594132 1 0.0684711337089539 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target GPX5;ZBED9 ENSG00000224586;ENSG00000232040 intergenic Human other chr6:28505450 chr6:28505460 . . 0 31 hm5C_associated_SNPs_6371 0 0 1 0 0 unknown 1 0.500231643816343 1 0.999536712367314 hm5C_site_9181 DeepMRMD:1;iRNA_m5C:0.999536712367314 9182 chr6 28557145 28557145 1 + C A rs116739834 28557161 + 28557141 28557181 41 TGTACCCTTGTGGTTGGTCCCATGGTGTAATGGTTAGCACT TGTAACCTTGTGGTTGGTCCCATGGTGTAATGGTTAGCACT < 41bp 1 0.265341668998206 1 0.223408550024033 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZBED9 ENSG00000246350 ncRNA_exonic Human antisense chr6:28557161 chr6:28557145 . . 0 5 hm5C_associated_SNPs_6372 0 0 1 0 0 nucleolus 1 0.500231643921173 1 0.999536712157653 hm5C_site_9182 DeepMRMD:1;iRNA_m5C:0.999536712157653 9183 chr6 28557146 28557146 1 + C A rs369411645 28557161 + 28557141 28557181 41 TGTACCCTTGTGGTTGGTCCCATGGTGTAATGGTTAGCACT TGTACACTTGTGGTTGGTCCCATGGTGTAATGGTTAGCACT < 41bp 1 0.273112851197621 1 0.199669897556305 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZBED9 ENSG00000246350 ncRNA_exonic Human antisense chr6:28557161 chr6:28557146 . . 0 6 hm5C_associated_SNPs_6373 0 0 1 0 0 nucleolus 1 0.500231643920648 1 0.999536712158703 hm5C_site_9183 DeepMRMD:1;iRNA_m5C:0.999536712158703 9184 chr6 28557149 28557149 1 + T C rs114416898 28557161 + 28557141 28557181 41 TGTACCCTTGTGGTTGGTCCCATGGTGTAATGGTTAGCACT TGTACCCTCGTGGTTGGTCCCATGGTGTAATGGTTAGCACT < 41bp 1 0.263863420987537 1 0.131687790155411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZBED9 ENSG00000246350 ncRNA_exonic Human antisense chr6:28557161 chr6:28557149 . . 0 9 hm5C_associated_SNPs_6374 0 0 1 0 0 nucleolus 1 0.500231643909634 1 0.999536712180732 hm5C_site_9184 DeepMRMD:1;iRNA_m5C:0.999536712180732 9185 chr6 28557151 28557151 1 + T C rs397708 28557161 + 28557141 28557181 41 TGTACCCTTGTGGTTGGTCCCATGGTGTAATGGTTAGCACT TGTACCCTTGCGGTTGGTCCCATGGTGTAATGGTTAGCACT < 41bp 1 0.276720232796322 1 0.139787226915359 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZBED9 ENSG00000246350 ncRNA_exonic Human antisense chr6:28557161 chr6:28557151 . . 0 11 hm5C_associated_SNPs_6375 0 0 1 0 0 nucleolus 1 0.500231643921092 1 0.999536712157817 hm5C_site_9185 DeepMRMD:1;iRNA_m5C:0.999536712157817 9186 chr6 28574978 28574978 1 + T C rs536026969 28574958 + 28574938 28574978 41 TGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGTACGAGGT TGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGTACGAGGC < 41bp 1 0.4844905390424 1 0.455250293016434 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9 ENSG00000246350;ENSG00000271440 intergenic Human other chr6:28574958 chr6:28574978 . . 0 41 hm5C_associated_SNPs_6376 0 0 1 0 0 nucleolus 1 0.500231554743824 1 0.999536890512352 hm5C_site_9186 DeepMRMD:1;iRNA_m5C:0.999536890512352 9187 chr6 28574978 28574978 1 + T C rs536026969 28574962 + 28574942 28574982 41 GCTCAGTGGTAGAGCGCGTGCTTAGCATGTACGAGGTCCCG GCTCAGTGGTAGAGCGCGTGCTTAGCATGTACGAGGCCCCG < 41bp 1 0.389807740937996 1 0.0518938601016998 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9 ENSG00000246350;ENSG00000271440 intergenic Human other chr6:28574962 chr6:28574978 . . 0 37 hm5C_associated_SNPs_6377 0 0 1 0 0 nucleolus 1 0.500229467936864 1 0.999541064126272 hm5C_site_9187 DeepMRMD:1;iRNA_m5C:0.999541064126272 9188 chr6 28574978 28574978 1 + T C rs536026969 28574967 + 28574947 28574987 41 GTGGTAGAGCGCGTGCTTAGCATGTACGAGGTCCCGGGTTC GTGGTAGAGCGCGTGCTTAGCATGTACGAGGCCCCGGGTTC < 41bp 1 0.592704261350662 1 0.309579193592072 experiment 0.814591477298676 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9 ENSG00000246350;ENSG00000271440 intergenic Human other chr6:28574967 chr6:28574978 . . 0 32 hm5C_associated_SNPs_6378 0 0 1 0 0 nucleolus 1 0.500231643921448 1 0.999536712157105 hm5C_site_9188 DeepMRMD:1;iRNA_m5C:0.999536712157105 9189 chr6 28574978 28574978 1 + T C rs536026969 28574980 + 28574960 28575000 41 TGCTTAGCATGTACGAGGTCCCGGGTTCAATCCCCGGCACC TGCTTAGCATGTACGAGGCCCCGGGTTCAATCCCCGGCACC < 41bp 1 0.556984066433888 1 0.391357183456421 experiment 0.886031867132224 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9 ENSG00000246350;ENSG00000271440 intergenic Human other chr6:28574980 chr6:28574978 . . 0 19 hm5C_associated_SNPs_6381 0 0 1 0 0 nucleolus 1 0.500231643921106 1 0.999536712157789 hm5C_site_9189 DeepMRMD:1;iRNA_m5C:0.999536712157789 9190 chr6 28574978 28574978 1 + T C rs536026969 28574987 + 28574967 28575007 41 CATGTACGAGGTCCCGGGTTCAATCCCCGGCACCTCCACCA CATGTACGAGGCCCCGGGTTCAATCCCCGGCACCTCCACCA < 41bp 1 0.222776341382322 1 0.111714512109756 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9 ENSG00000246350;ENSG00000271440 intergenic Human other chr6:28574987 chr6:28574978 . . 0 12 hm5C_associated_SNPs_6382 0 0 1 0 0 nucleolus 1 0.500231643890767 1 0.999536712218466 hm5C_site_9190 DeepMRMD:1;iRNA_m5C:0.999536712218466 9191 chr6 28574978 28574978 1 + T C rs536026969 28574991 + 28574971 28575011 41 TACGAGGTCCCGGGTTCAATCCCCGGCACCTCCACCAGTTT TACGAGGCCCCGGGTTCAATCCCCGGCACCTCCACCAGTTT < 41bp 1 0.460262959922962 1 0.221023976802826 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9 ENSG00000246350;ENSG00000271440 intergenic Human other chr6:28574991 chr6:28574978 . . 0 8 hm5C_associated_SNPs_6383 0 0 1 0 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_9191 DeepMRMD:1;iRNA_m5C:0.999536712157815 9192 chr6 28574978 28574978 1 + T C rs536026969 28574992 + 28574972 28575012 41 ACGAGGTCCCGGGTTCAATCCCCGGCACCTCCACCAGTTTT ACGAGGCCCCGGGTTCAATCCCCGGCACCTCCACCAGTTTT < 41bp 1 0.554361637753918 1 0.758486092090607 experiment 0.891276724492165 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9 ENSG00000246350;ENSG00000271440 intergenic Human other chr6:28574992 chr6:28574978 . . 0 7 hm5C_associated_SNPs_6384 0 0 1 0 0 nucleolus 1 0.500231643921086 0.483027815818786 0.999536712157828 hm5C_site_9192 DeepMRMD:0.483027815818786;iRNA_m5C:0.999536712157828 9193 chr6 28574978 28574978 1 + T C rs536026969 28574993 + 28574973 28575013 41 CGAGGTCCCGGGTTCAATCCCCGGCACCTCCACCAGTTTTG CGAGGCCCCGGGTTCAATCCCCGGCACCTCCACCAGTTTTG < 41bp 1 0.342937235451533 1 0.379184424877167 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9 ENSG00000246350;ENSG00000271440 intergenic Human other chr6:28574993 chr6:28574978 . . 0 6 hm5C_associated_SNPs_6385 0 0 1 0 0 nucleolus 1 0.500231643922189 1 0.999536712155622 hm5C_site_9193 DeepMRMD:1;iRNA_m5C:0.999536712155622 9194 chr6 28574978 28574978 1 + T C rs536026969 28574994 + 28574974 28575014 41 GAGGTCCCGGGTTCAATCCCCGGCACCTCCACCAGTTTTGG GAGGCCCCGGGTTCAATCCCCGGCACCTCCACCAGTTTTGG < 41bp 1 0.667003963400555 1 0.694162011146545 experiment 0.665992073198889 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9 ENSG00000246350;ENSG00000271440 intergenic Human other chr6:28574994 chr6:28574978 . . 0 5 hm5C_associated_SNPs_6386 0 0 1 0 0 nucleolus 1 0.500231643921092 0.61167597770691 0.999536712157815 hm5C_site_9194 DeepMRMD:0.61167597770691;iRNA_m5C:0.999536712157815 9195 chr6 28574978 28574978 1 + T C rs536026969 28574997 + 28574977 28575017 41 GTCCCGGGTTCAATCCCCGGCACCTCCACCAGTTTTGGGAG GCCCCGGGTTCAATCCCCGGCACCTCCACCAGTTTTGGGAG < 41bp 1 0.26594157909551 1 0.197911620140076 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9 ENSG00000246350;ENSG00000271440 intergenic Human other chr6:28574997 chr6:28574978 . . 0 2 hm5C_associated_SNPs_6387 0 0 1 0 0 nucleolus 1 0.500231643919356 1 0.999536712161288 hm5C_site_9195 DeepMRMD:1;iRNA_m5C:0.999536712161288 9196 chr6 28611252 28611252 1 + T A rs543537348 28611232 + 28611212 28611252 41 GTCTATGTGTGGGGATGTAGCTCAGTGGTAGAGCGCATGCT GTCTATGTGTGGGGATGTAGCTCAGTGGTAGAGCGCATGCA < 41bp 1 0.528321191762759 1 0.0785869657993317 experiment 0.943357616474483 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9;LINC00533 ENSG00000271440;ENSG00000272278 intergenic Human other chr6:28611232 chr6:28611252 . . 0 41 hm5C_associated_SNPs_6388 0 0 1 0 0 unknown 1 0.500231344186099 1 0.999537311627802 hm5C_site_9196 DeepMRMD:1;iRNA_m5C:0.999537311627802 9197 chr6 28611252 28611252 1 + T A rs543537348 28611245 + 28611225 28611265 41 GATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAG GATGTAGCTCAGTGGTAGAGCGCATGCATTGCATGTATGAG < 41bp 1 0.268200826185076 1 0.0768329799175262 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ZBED9;LINC00533 ENSG00000271440;ENSG00000272278 intergenic Human other chr6:28611245 chr6:28611252 . . 0 28 hm5C_associated_SNPs_6389 0 0 1 0 0 unknown 1 0.50022892745331 1 0.99954214509338 hm5C_site_9197 DeepMRMD:1;iRNA_m5C:0.99954214509338 9198 chr6 28611252 28611252 1 + T A rs543537348 28611268 + 28611248 28611288 41 ATGCTTTGCATGTATGAGGTCCCGGGTTCGATCCCCGGCAT ATGCATTGCATGTATGAGGTCCCGGGTTCGATCCCCGGCAT < 41bp 1 0.650306461936298 1 0.806942105293274 experiment 0.699387076127404 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9;LINC00533 ENSG00000271440;ENSG00000272278 intergenic Human other chr6:28611268 chr6:28611252 . . 0 5 hm5C_associated_SNPs_6390 0 0 1 0 0 unknown 1 0.500231646491223 0.386115789413452 0.999536707017554 hm5C_site_9198 DeepMRMD:0.386115789413452;iRNA_m5C:0.999536707017554 9199 chr6 28611252 28611252 1 + T A rs543537348 28611269 + 28611249 28611289 41 TGCTTTGCATGTATGAGGTCCCGGGTTCGATCCCCGGCATC TGCATTGCATGTATGAGGTCCCGGGTTCGATCCCCGGCATC < 41bp 1 0.405250711185506 1 0.419480264186859 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9;LINC00533 ENSG00000271440;ENSG00000272278 intergenic Human other chr6:28611269 chr6:28611252 . . 0 4 hm5C_associated_SNPs_6391 0 0 1 0 0 unknown 1 0.500231644820295 1 0.99953671035941 hm5C_site_9199 DeepMRMD:1;iRNA_m5C:0.99953671035941 9200 chr6 28611261 28611261 1 + A G rs142968153 28611245 + 28611225 28611265 41 GATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAG GATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTGTGAG < 41bp 1 0.272821930241351 1 0.0987185537815094 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ZBED9;LINC00533 ENSG00000271440;ENSG00000272278 intergenic Human other chr6:28611245 chr6:28611261 . . 0 37 hm5C_associated_SNPs_6392 0 0 1 0 0 unknown 1 0.500231533215949 1 0.999536933568101 hm5C_site_9200 DeepMRMD:1;iRNA_m5C:0.999536933568101 9201 chr6 28611261 28611261 1 + A G rs142968153 28611268 + 28611248 28611288 41 ATGCTTTGCATGTATGAGGTCCCGGGTTCGATCCCCGGCAT ATGCTTTGCATGTGTGAGGTCCCGGGTTCGATCCCCGGCAT < 41bp 1 0.67658709726532 1 0.887403666973114 experiment 0.646825805469361 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9;LINC00533 ENSG00000271440;ENSG00000272278 intergenic Human other chr6:28611268 chr6:28611261 . . 0 14 hm5C_associated_SNPs_6393 0 0 1 0 0 unknown 1 0.500231033645462 0.225192666053772 0.999537932709076 hm5C_site_9201 DeepMRMD:0.225192666053772;iRNA_m5C:0.999537932709076 9202 chr6 28611261 28611261 1 + A G rs142968153 28611269 + 28611249 28611289 41 TGCTTTGCATGTATGAGGTCCCGGGTTCGATCCCCGGCATC TGCTTTGCATGTGTGAGGTCCCGGGTTCGATCCCCGGCATC < 41bp 1 0.50194134067239 1 0.665505945682526 experiment 0.996117318655219 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9;LINC00533 ENSG00000271440;ENSG00000272278 intergenic Human other chr6:28611269 chr6:28611261 . . 0 13 hm5C_associated_SNPs_6394 0 0 1 0 0 unknown 1 0.500231566062478 0.668988108634948 0.999536867875045 hm5C_site_9202 DeepMRMD:0.668988108634948;iRNA_m5C:0.999536867875045 9203 chr6 28611269 28611269 1 + C A rs559361842 28611282 + 28611262 28611302 41 TGAGGTCCCGGGTTCGATCCCCGGCATCTCCAATAGGTATT TGAGGTCACGGGTTCGATCCCCGGCATCTCCAATAGGTATT < 41bp 1 0.259272210930836 1 0.172166168689728 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9;LINC00533 ENSG00000271440;ENSG00000272278 intergenic Human other chr6:28611282 chr6:28611269 . . 0 8 hm5C_associated_SNPs_6395 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9203 DeepMRMD:1;iRNA_m5C:0.999536712157815 9204 chr6 28611289 28611289 1 + C T rs115580222 28611269 + 28611249 28611289 41 TGCTTTGCATGTATGAGGTCCCGGGTTCGATCCCCGGCATC TGCTTTGCATGTATGAGGTCCCGGGTTCGATCCCCGGCATT < 41bp 1 0.371560038067839 1 0.428669989109039 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9;LINC00533 ENSG00000271440;ENSG00000272278 intergenic Human other chr6:28611269 chr6:28611289 . . 0 41 hm5C_associated_SNPs_6396 0 0 1 0 0 unknown 1 0.500231462787847 1 0.999537074424306 hm5C_site_9204 DeepMRMD:1;iRNA_m5C:0.999537074424306 9205 chr6 28611289 28611289 1 + C T rs115580222 28611282 + 28611262 28611302 41 TGAGGTCCCGGGTTCGATCCCCGGCATCTCCAATAGGTATT TGAGGTCCCGGGTTCGATCCCCGGCATTTCCAATAGGTATT < 41bp 1 0.218162717229689 1 0.248357206583023 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZBED9;LINC00533 ENSG00000271440;ENSG00000272278 intergenic Human other chr6:28611282 chr6:28611289 . . 0 28 hm5C_associated_SNPs_6397 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157813 hm5C_site_9205 DeepMRMD:1;iRNA_m5C:0.999536712157813 9206 chr6 28678368 28678368 1 + G A rs151253159 28678376 + 28678356 28678396 41 CTAGCTTTAAGGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT CTAGCTTTAAGGAGGTGTAGCTCAGTGGTAGAGCGCGTGCT < 41bp 1 0.345817735809328 1 0.0876290500164032 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678376 chr6:28678368 . . 0 13 hm5C_associated_SNPs_6398 0 0 1 0 0 unknown 1 0.500232273531902 1 0.999535452936196 hm5C_site_9206 DeepMRMD:1;iRNA_m5C:0.999535452936196 9207 chr6 28678368 28678368 1 + G A rs151253159 28678378 + 28678358 28678398 41 AGCTTTAAGGGGGTGTAGCTCAGTGGTAGAGCGCGTGCTTA AGCTTTAAGGAGGTGTAGCTCAGTGGTAGAGCGCGTGCTTA < 41bp 1 0.684252478813726 1 0.805902004241943 experiment 0.631495042372549 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678378 chr6:28678368 . . 0 11 hm5C_associated_SNPs_6399 0 0 1 0 0 unknown 1 0.500231916550472 0.388195991516114 0.999536166899056 hm5C_site_9207 DeepMRMD:0.388195991516114;iRNA_m5C:0.999536166899056 9208 chr6 28678387 28678387 1 + A G rs77679360 28678376 + 28678356 28678396 41 CTAGCTTTAAGGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT CTAGCTTTAAGGGGGTGTAGCTCAGTGGTAGGGCGCGTGCT < 41bp 1 0.441439049106689 1 0.283150166273117 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678376 chr6:28678387 . . 0 32 hm5C_associated_SNPs_6400 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9208 DeepMRMD:1;iRNA_m5C:0.999536712157815 9209 chr6 28678387 28678387 1 + A G rs77679360 28678389 + 28678369 28678409 41 GGTGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAG GGTGTAGCTCAGTGGTAGGGCGCGTGCTTAGCATGCACGAG < 41bp 1 0.606514579897633 1 0.440521001815796 experiment 0.786970840204735 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678389 chr6:28678387 . . 0 19 hm5C_associated_SNPs_6402 0 0 1 0 0 unknown 1 0.50023163895829 1 0.99953672208342 hm5C_site_9209 DeepMRMD:1;iRNA_m5C:0.99953672208342 9210 chr6 28678387 28678387 1 + A G rs77679360 28678391 + 28678371 28678411 41 TGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAGGC TGTAGCTCAGTGGTAGGGCGCGTGCTTAGCATGCACGAGGC < 41bp 1 0.380795834095162 1 0.197815358638763 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678391 chr6:28678387 . . 0 17 hm5C_associated_SNPs_6403 0 0 1 0 0 unknown 1 0.500231631408809 1 0.999536737182382 hm5C_site_9210 DeepMRMD:1;iRNA_m5C:0.999536737182382 9211 chr6 28678387 28678387 1 + A G rs77679360 28678395 + 28678375 28678415 41 GCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAGGCCCTG GCTCAGTGGTAGGGCGCGTGCTTAGCATGCACGAGGCCCTG < 41bp 1 0.447494500661173 1 0.0719825029373169 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678395 chr6:28678387 . . 0 13 hm5C_associated_SNPs_6404 0 0 1 0 0 unknown 1 0.500232227212513 1 0.999535545574973 hm5C_site_9211 DeepMRMD:1;iRNA_m5C:0.999535545574973 9212 chr6 28678387 28678387 1 + A G rs77679360 28678400 + 28678380 28678420 41 GTGGTAGAGCGCGTGCTTAGCATGCACGAGGCCCTGGGTTC GTGGTAGGGCGCGTGCTTAGCATGCACGAGGCCCTGGGTTC < 41bp 1 0.453340678423159 1 0.507016539573669 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678400 chr6:28678387 . . 0 8 hm5C_associated_SNPs_6405 0 0 1 0 0 unknown 1 0.500231643921093 0.985966920852662 0.999536712157815 hm5C_site_9212 DeepMRMD:0.985966920852662;iRNA_m5C:0.999536712157815 9213 chr6 28678406 28678406 1 + C G rs369829956 28678389 + 28678369 28678409 41 GGTGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAG GGTGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGCAGGAG < 41bp 1 0.655576992553739 1 0.524867117404938 experiment 0.688846014892523 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678389 chr6:28678406 . . 0 38 hm5C_associated_SNPs_6407 0 0 1 0 0 unknown 1 0.50023182152221 0.950265765190124 0.99953635695558 hm5C_site_9213 DeepMRMD:0.950265765190124;iRNA_m5C:0.99953635695558 9214 chr6 28678406 28678406 1 + C G rs369829956 28678391 + 28678371 28678411 41 TGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAGGC TGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGCAGGAGGC < 41bp 1 0.397355746366448 1 0.436490446329117 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678391 chr6:28678406 . . 0 36 hm5C_associated_SNPs_6408 0 0 1 0 0 unknown 1 0.500231637539041 1 0.999536724921918 hm5C_site_9214 DeepMRMD:1;iRNA_m5C:0.999536724921918 9215 chr6 28678406 28678406 1 + C G rs369829956 28678395 + 28678375 28678415 41 GCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAGGCCCTG GCTCAGTGGTAGAGCGCGTGCTTAGCATGCAGGAGGCCCTG < 41bp 1 0.373205748408062 1 0.0470384359359741 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678395 chr6:28678406 . . 0 32 hm5C_associated_SNPs_6409 0 0 1 0 0 unknown 1 0.500231487907688 1 0.999537024184624 hm5C_site_9215 DeepMRMD:1;iRNA_m5C:0.999537024184624 9216 chr6 28678406 28678406 1 + C G rs369829956 28678400 + 28678380 28678420 41 GTGGTAGAGCGCGTGCTTAGCATGCACGAGGCCCTGGGTTC GTGGTAGAGCGCGTGCTTAGCATGCAGGAGGCCCTGGGTTC < 41bp 1 0.43954373991696 1 0.451599061489105 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678400 chr6:28678406 . . 0 27 hm5C_associated_SNPs_6410 0 0 1 0 0 unknown 1 0.500231643927653 1 0.999536712144694 hm5C_site_9216 DeepMRMD:1;iRNA_m5C:0.999536712144694 9217 chr6 28678406 28678406 1 + C G rs369829956 28678411 + 28678391 28678431 41 CGTGCTTAGCATGCACGAGGCCCTGGGTTCAATCCCCAGCA CGTGCTTAGCATGCAGGAGGCCCTGGGTTCAATCCCCAGCA < 41bp 1 0.249743319265507 1 0.168956398963928 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678411 chr6:28678406 . . 0 16 hm5C_associated_SNPs_6411 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_9217 DeepMRMD:1;iRNA_m5C:0.999536712157814 9218 chr6 28678406 28678406 1 + C G rs369829956 28678412 + 28678392 28678432 41 GTGCTTAGCATGCACGAGGCCCTGGGTTCAATCCCCAGCAC GTGCTTAGCATGCAGGAGGCCCTGGGTTCAATCCCCAGCAC < 41bp 1 0.462897688402978 1 0.221095263957977 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678412 chr6:28678406 . . 0 15 hm5C_associated_SNPs_6412 0 0 1 0 0 unknown 1 0.50023151694438 1 0.999536966111239 hm5C_site_9218 DeepMRMD:1;iRNA_m5C:0.999536966111239 9219 chr6 28678406 28678406 1 + C G rs369829956 28678420 + 28678400 28678440 41 CATGCACGAGGCCCTGGGTTCAATCCCCAGCACCTCCATGT CATGCAGGAGGCCCTGGGTTCAATCCCCAGCACCTCCATGT < 41bp 1 0.17856883554826 1 0.0315842628479004 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678420 chr6:28678406 . . 0 7 hm5C_associated_SNPs_6414 0 0 1 0 0 unknown 1 0.500231643921089 1 0.999536712157822 hm5C_site_9219 DeepMRMD:1;iRNA_m5C:0.999536712157822 9220 chr6 28678406 28678406 1 + C G rs369829956 28678424 + 28678404 28678444 41 CACGAGGCCCTGGGTTCAATCCCCAGCACCTCCATGTATTA CAGGAGGCCCTGGGTTCAATCCCCAGCACCTCCATGTATTA < 41bp 1 0.555080600742497 1 0.229709148406982 experiment 0.889838798515006 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678424 chr6:28678406 . . 0 3 hm5C_associated_SNPs_6415 0 0 1 0 0 unknown 1 0.500231643918477 1 0.999536712163046 hm5C_site_9220 DeepMRMD:1;iRNA_m5C:0.999536712163046 9221 chr6 28678406 28678406 1 + C G rs369829956 28678425 + 28678405 28678445 41 ACGAGGCCCTGGGTTCAATCCCCAGCACCTCCATGTATTAT AGGAGGCCCTGGGTTCAATCCCCAGCACCTCCATGTATTAT < 41bp 1 0.234286916981475 1 0.44929364323616 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678425 chr6:28678406 . . 0 2 hm5C_associated_SNPs_6416 0 0 1 0 0 unknown 1 0.50023164351987 1 0.99953671296026 hm5C_site_9221 DeepMRMD:1;iRNA_m5C:0.99953671296026 9222 chr6 28678406 28678406 1 + C G rs369829956 28678426 + 28678406 28678446 41 CGAGGCCCTGGGTTCAATCCCCAGCACCTCCATGTATTATG GGAGGCCCTGGGTTCAATCCCCAGCACCTCCATGTATTATG < 41bp 1 0.204084268596535 1 0.453490555286407 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28678426 chr6:28678406 . . 0 1 hm5C_associated_SNPs_6417 0 0 1 0 0 unknown 1 0.500231633142345 1 0.99953673371531 hm5C_site_9222 DeepMRMD:1;iRNA_m5C:0.99953673371531 9223 chr6 28687481 28687481 1 + G A rs148476028 28687491 + 28687471 28687511 41 CTATTGCAACGGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT CTATTGCAACAGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT < 41bp 1 0.450888399881132 1 0.263635128736496 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28687491 chr6:28687481 . . 0 11 hm5C_associated_SNPs_6418 0 0 1 0 0 unknown 1 0.500221290954951 1 0.999557418090097 hm5C_site_9223 DeepMRMD:1;iRNA_m5C:0.999557418090097 9224 chr6 28687489 28687489 1 + A G rs116575156 28687491 + 28687471 28687511 41 CTATTGCAACGGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT CTATTGCAACGGGGGTGTGGCTCAGTGGTAGAGCGCGTGCT < 41bp 1 0.403272999461616 1 0.477913022041321 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28687491 chr6:28687489 . . 0 19 hm5C_associated_SNPs_6419 0 0 1 0 0 unknown 1 0.500231644017222 1 0.999536711965555 hm5C_site_9224 DeepMRMD:1;iRNA_m5C:0.999536711965555 9225 chr6 28687499 28687499 1 + T A rs111467285 28687491 + 28687471 28687511 41 CTATTGCAACGGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT CTATTGCAACGGGGGTGTAGCTCAGTGGAAGAGCGCGTGCT < 41bp 1 0.475960523603024 1 0.412257015705109 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28687491 chr6:28687499 . . 0 29 hm5C_associated_SNPs_6421 0 0 1 0 0 unknown 1 0.500228608864239 1 0.999542782271521 hm5C_site_9225 DeepMRMD:1;iRNA_m5C:0.999542782271521 9226 chr6 28687499 28687499 1 + T A rs111467285 28687504 + 28687484 28687524 41 GGTGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAG GGTGTAGCTCAGTGGAAGAGCGCGTGCTTAGCATGCACGAG < 41bp 1 0.686681781171121 1 0.520466923713684 experiment 0.626636437657758 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28687504 chr6:28687499 . . 0 16 hm5C_associated_SNPs_6422 0 0 1 0 0 unknown 1 0.500231664047124 0.959066152572632 0.999536671905752 hm5C_site_9226 DeepMRMD:0.959066152572632;iRNA_m5C:0.999536671905752 9227 chr6 28687499 28687499 1 + T A rs111467285 28687510 + 28687490 28687530 41 GCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAGGCCCCG GCTCAGTGGAAGAGCGCGTGCTTAGCATGCACGAGGCCCCG < 41bp 1 0.374240780866482 1 0.0272349119186401 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28687510 chr6:28687499 . . 0 10 hm5C_associated_SNPs_6423 0 0 1 0 0 unknown 1 0.500231623889138 1 0.999536752221723 hm5C_site_9227 DeepMRMD:1;iRNA_m5C:0.999536752221723 9228 chr6 28687543 28687543 1 + G A rs530143390 28687528 + 28687508 28687548 41 TGCTTAGCATGCACGAGGCCCCGGGTTCAATCCCTGGCACC TGCTTAGCATGCACGAGGCCCCGGGTTCAATCCCTAGCACC < 41bp 1 0.516283105910304 1 0.333420783281326 experiment 0.967433788179392 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28687528 chr6:28687543 . . 0 36 hm5C_associated_SNPs_6424 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9228 DeepMRMD:1;iRNA_m5C:0.999536712157815 9229 chr6 28693800 28693800 1 + C T rs145472571 28693805 + 28693785 28693825 41 AGTCTCCGTGGGCTCCGTAGCTTAGTTGGTTAAAGCGCCTG AGTCTCCGTGGGCTCTGTAGCTTAGTTGGTTAAAGCGCCTG < 41bp 1 0.357001664391214 1 0.25536835193634 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693805 chr6:28693800 . . 0 16 hm5C_associated_SNPs_6425 0 0 1 0 0 unknown 1 0.500231643939809 1 0.999536712120381 hm5C_site_9229 DeepMRMD:1;iRNA_m5C:0.999536712120381 9230 chr6 28693800 28693800 1 + C T rs145472571 28693820 + 28693800 28693840 41 CGTAGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAG TGTAGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAG < 41bp 1 0.56194860636548 1 0.201084911823273 experiment 0.87610278726904 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693820 chr6:28693800 . . 0 1 hm5C_associated_SNPs_6426 0 0 1 0 0 unknown 1 0.50023164392101 1 0.99953671215798 hm5C_site_9230 DeepMRMD:1;iRNA_m5C:0.99953671215798 9231 chr6 28693802 28693802 1 + T C rs116446793 28693800 + 28693780 28693820 41 AAAACAGTCTCCGTGGGCTCCGTAGCTTAGTTGGTTAAAGC AAAACAGTCTCCGTGGGCTCCGCAGCTTAGTTGGTTAAAGC < 41bp 1 0.276477488662015 1 0.162943929433823 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693800 chr6:28693802 . . 0 23 hm5C_associated_SNPs_6427 0 0 1 0 0 unknown 1 0.500231614916125 1 0.999536770167751 hm5C_site_9231 DeepMRMD:1;iRNA_m5C:0.999536770167751 9232 chr6 28693802 28693802 1 + T C rs116446793 28693805 + 28693785 28693825 41 AGTCTCCGTGGGCTCCGTAGCTTAGTTGGTTAAAGCGCCTG AGTCTCCGTGGGCTCCGCAGCTTAGTTGGTTAAAGCGCCTG < 41bp 1 0.260411924399784 1 0.337512731552124 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693805 chr6:28693802 . . 0 18 hm5C_associated_SNPs_6428 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9232 DeepMRMD:1;iRNA_m5C:0.999536712157815 9233 chr6 28693802 28693802 1 + T C rs116446793 28693820 + 28693800 28693840 41 CGTAGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAG CGCAGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAG < 41bp 1 0.505189406340499 1 0.193990021944046 experiment 0.989621187319002 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693820 chr6:28693802 . . 0 3 hm5C_associated_SNPs_6429 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9233 DeepMRMD:1;iRNA_m5C:0.999536712157815 9234 chr6 28693809 28693809 1 + G A rs148841510 28693800 + 28693780 28693820 41 AAAACAGTCTCCGTGGGCTCCGTAGCTTAGTTGGTTAAAGC AAAACAGTCTCCGTGGGCTCCGTAGCTTAATTGGTTAAAGC < 41bp 1 0.111492891672349 1 0.0457979738712311 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693800 chr6:28693809 . . 0 30 hm5C_associated_SNPs_6430 0 0 1 0 0 unknown 1 0.500231643771842 1 0.999536712456316 hm5C_site_9234 DeepMRMD:1;iRNA_m5C:0.999536712456316 9235 chr6 28693809 28693809 1 + G A rs148841510 28693805 + 28693785 28693825 41 AGTCTCCGTGGGCTCCGTAGCTTAGTTGGTTAAAGCGCCTG AGTCTCCGTGGGCTCCGTAGCTTAATTGGTTAAAGCGCCTG < 41bp 1 0.41667881469644 1 0.660941183567047 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693805 chr6:28693809 . . 0 25 hm5C_associated_SNPs_6431 0 0 1 0 0 unknown 1 0.500231643921092 0.678117632865906 0.999536712157815 hm5C_site_9235 DeepMRMD:0.678117632865906;iRNA_m5C:0.999536712157815 9236 chr6 28693809 28693809 1 + G A rs148841510 28693820 + 28693800 28693840 41 CGTAGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAG CGTAGCTTAATTGGTTAAAGCGCCTGTCTAGTAAACAGGAG < 41bp 1 0.510999365415375 1 0.191096395254135 experiment 0.978001269169251 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693820 chr6:28693809 . . 0 10 hm5C_associated_SNPs_6432 0 0 1 0 0 unknown 1 0.500231643921084 1 0.999536712157831 hm5C_site_9236 DeepMRMD:1;iRNA_m5C:0.999536712157831 9237 chr6 28693809 28693809 1 + G A rs148841510 28693827 + 28693807 28693847 41 TAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCCTGG TAATTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCCTGG < 41bp 1 0.341867933318365 1 0.353074491024017 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693827 chr6:28693809 . . 0 3 hm5C_associated_SNPs_6433 0 0 1 0 0 unknown 1 0.500231643921648 1 0.999536712156705 hm5C_site_9237 DeepMRMD:1;iRNA_m5C:0.999536712156705 9238 chr6 28693827 28693827 1 + C A rs572623484 28693820 + 28693800 28693840 41 CGTAGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAG CGTAGCTTAGTTGGTTAAAGCGCCTGTATAGTAAACAGGAG < 41bp 1 0.562294930140047 1 0.282552003860474 experiment 0.875410139719907 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693820 chr6:28693827 . . 0 28 hm5C_associated_SNPs_6434 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9238 DeepMRMD:1;iRNA_m5C:0.999536712157815 9239 chr6 28693827 28693827 1 + C A rs572623484 28693843 + 28693823 28693863 41 CTGTCTAGTAAACAGGAGATCCTGGGTTCGACTCCCAGCGG CTGTATAGTAAACAGGAGATCCTGGGTTCGACTCCCAGCGG < 41bp 1 0.52544875407627 1 0.42626565694809 experiment 0.949102491847461 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693843 chr6:28693827 . . 0 5 hm5C_associated_SNPs_6435 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157813 hm5C_site_9239 DeepMRMD:1;iRNA_m5C:0.999536712157813 9240 chr6 28693844 28693844 1 + C T rs188401418 28693827 + 28693807 28693847 41 TAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCCTGG TAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCTTGG < 41bp 1 0.306550032385184 1 0.18179515004158 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693827 chr6:28693844 . . 0 38 hm5C_associated_SNPs_6436 0 0 1 0 0 unknown 1 0.500231643964812 1 0.999536712070376 hm5C_site_9240 DeepMRMD:1;iRNA_m5C:0.999536712070376 9241 chr6 28693844 28693844 1 + C T rs188401418 28693851 + 28693831 28693871 41 TAAACAGGAGATCCTGGGTTCGACTCCCAGCGGGGCCTTGG TAAACAGGAGATCTTGGGTTCGACTCCCAGCGGGGCCTTGG < 41bp 1 0.269667890161576 1 0.0888975262641907 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693851 chr6:28693844 . . 0 14 hm5C_associated_SNPs_6438 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9241 DeepMRMD:1;iRNA_m5C:0.999536712157815 9242 chr6 28693844 28693844 1 + C T rs188401418 28693856 + 28693836 28693876 41 AGGAGATCCTGGGTTCGACTCCCAGCGGGGCCTTGGTTGGC AGGAGATCTTGGGTTCGACTCCCAGCGGGGCCTTGGTTGGC < 41bp 1 0.267674851394721 1 0.383025825023651 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693856 chr6:28693844 . . 0 9 hm5C_associated_SNPs_6439 0 0 1 0 0 unknown 1 0.500231652515353 1 0.999536694969293 hm5C_site_9242 DeepMRMD:1;iRNA_m5C:0.999536694969293 9243 chr6 28693844 28693844 1 + C T rs188401418 28693857 + 28693837 28693877 41 GGAGATCCTGGGTTCGACTCCCAGCGGGGCCTTGGTTGGCA GGAGATCTTGGGTTCGACTCCCAGCGGGGCCTTGGTTGGCA < 41bp 1 0.257929436039423 1 0.439641952514648 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693857 chr6:28693844 . . 0 8 hm5C_associated_SNPs_6440 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157813 hm5C_site_9243 DeepMRMD:1;iRNA_m5C:0.999536712157813 9244 chr6 28693852 28693852 1 + G A rs7746022 28693843 + 28693823 28693863 41 CTGTCTAGTAAACAGGAGATCCTGGGTTCGACTCCCAGCGG CTGTCTAGTAAACAGGAGATCCTGGGTTCAACTCCCAGCGG < 41bp 1 0.491391716103248 1 0.321435272693634 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693843 chr6:28693852 . . 0 30 hm5C_associated_SNPs_6443 0 0 1 0 0 unknown 1 0.50023164389723 1 0.99953671220554 hm5C_site_9244 DeepMRMD:1;iRNA_m5C:0.99953671220554 9245 chr6 28693852 28693852 1 + G A rs7746022 28693851 + 28693831 28693871 41 TAAACAGGAGATCCTGGGTTCGACTCCCAGCGGGGCCTTGG TAAACAGGAGATCCTGGGTTCAACTCCCAGCGGGGCCTTGG < 41bp 1 0.231395493214179 1 0.0480727255344391 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693851 chr6:28693852 . . 0 22 hm5C_associated_SNPs_6444 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9245 DeepMRMD:1;iRNA_m5C:0.999536712157815 9246 chr6 28693852 28693852 1 + G A rs7746022 28693856 + 28693836 28693876 41 AGGAGATCCTGGGTTCGACTCCCAGCGGGGCCTTGGTTGGC AGGAGATCCTGGGTTCAACTCCCAGCGGGGCCTTGGTTGGC < 41bp 1 0.309629661586839 1 0.678675413131714 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693856 chr6:28693852 . . 0 17 hm5C_associated_SNPs_6445 0 0 1 0 0 unknown 1 0.500231629616441 0.642649173736572 0.999536740767118 hm5C_site_9246 DeepMRMD:0.642649173736572;iRNA_m5C:0.999536740767118 9247 chr6 28693852 28693852 1 + G A rs7746022 28693857 + 28693837 28693877 41 GGAGATCCTGGGTTCGACTCCCAGCGGGGCCTTGGTTGGCA GGAGATCCTGGGTTCAACTCCCAGCGGGGCCTTGGTTGGCA < 41bp 1 0.22857115711247 1 0.505480289459229 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693857 chr6:28693852 . . 0 16 hm5C_associated_SNPs_6446 0 0 1 0 0 unknown 1 0.500231643921092 0.989039421081542 0.999536712157815 hm5C_site_9247 DeepMRMD:0.989039421081542;iRNA_m5C:0.999536712157815 9248 chr6 28693852 28693852 1 + G A rs7746022 28693861 + 28693841 28693881 41 ATCCTGGGTTCGACTCCCAGCGGGGCCTTGGTTGGCAAGGT ATCCTGGGTTCAACTCCCAGCGGGGCCTTGGTTGGCAAGGT < 41bp 1 0.668762576718405 1 0.910639405250549 experiment 0.66247484656319 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28693861 chr6:28693852 . . 0 12 hm5C_associated_SNPs_6448 0 0 1 0 0 unknown 1 0.500231643921092 0.178721189498902 0.999536712157815 hm5C_site_9248 DeepMRMD:0.178721189498902;iRNA_m5C:0.999536712157815 9249 chr6 28697151 28697151 1 + C A rs190094265 28697137 + 28697117 28697157 41 CGTGCTTCGCATGTACGAGGCCCCGGGTTCGACCCCCGGCT CGTGCTTCGCATGTACGAGGCCCCGGGTTCGACCACCGGCT < 41bp 1 0.304406129602301 1 0.121918559074402 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28697137 chr6:28697151 . . 0 35 hm5C_associated_SNPs_6449 0 0 1 0 0 unknown 1 0.5002225252494 1 0.999554949501201 hm5C_site_9249 DeepMRMD:1;iRNA_m5C:0.999554949501201 9250 chr6 28697151 28697151 1 + C A rs190094265 28697138 + 28697118 28697158 41 GTGCTTCGCATGTACGAGGCCCCGGGTTCGACCCCCGGCTC GTGCTTCGCATGTACGAGGCCCCGGGTTCGACCACCGGCTC < 41bp 1 0.665313574571971 1 0.506311416625977 experiment 0.669372850856057 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28697138 chr6:28697151 . . 0 34 hm5C_associated_SNPs_6450 0 0 1 0 0 unknown 1 0.50023169804744 0.987377166748046 0.999536603905119 hm5C_site_9250 DeepMRMD:0.987377166748046;iRNA_m5C:0.999536603905119 9251 chr6 28697151 28697151 1 + C A rs190094265 28697139 + 28697119 28697159 41 TGCTTCGCATGTACGAGGCCCCGGGTTCGACCCCCGGCTCC TGCTTCGCATGTACGAGGCCCCGGGTTCGACCACCGGCTCC < 41bp 1 0.657239585600237 1 0.322072178125381 experiment 0.685520828799525 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28697139 chr6:28697151 . . 0 33 hm5C_associated_SNPs_6451 0 0 1 0 0 unknown 1 0.500231716429734 1 0.999536567140532 hm5C_site_9251 DeepMRMD:1;iRNA_m5C:0.999536567140532 9252 chr6 28697151 28697151 1 + C A rs190094265 28697146 + 28697126 28697166 41 CATGTACGAGGCCCCGGGTTCGACCCCCGGCTCCTCCAGTT CATGTACGAGGCCCCGGGTTCGACCACCGGCTCCTCCAGTT < 41bp 1 0.428506684827217 1 0.138717710971832 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28697146 chr6:28697151 . . 0 26 hm5C_associated_SNPs_6452 0 0 1 0 0 unknown 1 0.500231643921986 1 0.999536712156028 hm5C_site_9252 DeepMRMD:1;iRNA_m5C:0.999536712156028 9253 chr6 28697151 28697151 1 + C A rs190094265 28697156 + 28697136 28697176 41 GCCCCGGGTTCGACCCCCGGCTCCTCCAGTTGTCCATTTTC GCCCCGGGTTCGACCACCGGCTCCTCCAGTTGTCCATTTTC < 41bp 1 0.183566436663537 1 0.229268908500671 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000235570;ENSG00000237425 intergenic Human other chr6:28697156 chr6:28697151 . . 0 16 hm5C_associated_SNPs_6453 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9253 DeepMRMD:1;iRNA_m5C:0.999536712157815 9254 chr6 28715521 28715521 1 + G A rs142646949 28715522 + 28715502 28715542 41 TGGGTTGCGTCTACCCAGGGCCTGGATAGCTCAGTTGGTAG TGGGTTGCGTCTACCCAGGACCTGGATAGCTCAGTTGGTAG < 41bp 1 0.211998151678953 1 0.119551181793213 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715522 chr6:28715521 . . 0 20 hm5C_associated_SNPs_6454 0 0 1 0 0 unknown 1 0.500231643898167 1 0.999536712203666 hm5C_site_9254 DeepMRMD:1;iRNA_m5C:0.999536712203666 9255 chr6 28715521 28715521 1 + G A rs142646949 28715523 + 28715503 28715543 41 GGGTTGCGTCTACCCAGGGCCTGGATAGCTCAGTTGGTAGA GGGTTGCGTCTACCCAGGACCTGGATAGCTCAGTTGGTAGA < 41bp 1 0.690203593574651 1 0.719874739646912 experiment 0.619592812850697 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715523 chr6:28715521 . . 0 19 hm5C_associated_SNPs_6455 0 0 1 0 0 unknown 1 0.500231643921092 0.560250520706176 0.999536712157815 hm5C_site_9255 DeepMRMD:0.560250520706176;iRNA_m5C:0.999536712157815 9256 chr6 28715521 28715521 1 + G A rs142646949 28715531 + 28715511 28715551 41 TCTACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGA TCTACCCAGGACCTGGATAGCTCAGTTGGTAGAACATCAGA < 41bp 1 0.621133660870072 1 0.266806393861771 experiment 0.757732678259856 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715531 chr6:28715521 . . 0 11 hm5C_associated_SNPs_6456 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9256 DeepMRMD:1;iRNA_m5C:0.999536712157815 9257 chr6 28715521 28715521 1 + G A rs142646949 28715533 + 28715513 28715553 41 TACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGACT TACCCAGGACCTGGATAGCTCAGTTGGTAGAACATCAGACT < 41bp 1 0.358157675802988 1 0.26610067486763 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715533 chr6:28715521 . . 0 9 hm5C_associated_SNPs_6457 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9257 DeepMRMD:1;iRNA_m5C:0.999536712157815 9258 chr6 28715523 28715523 1 + C G rs369041602 28715522 + 28715502 28715542 41 TGGGTTGCGTCTACCCAGGGCCTGGATAGCTCAGTTGGTAG TGGGTTGCGTCTACCCAGGGCGTGGATAGCTCAGTTGGTAG < 41bp 1 0.423949516934092 1 0.208103686571121 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715522 chr6:28715523 . . 0 22 hm5C_associated_SNPs_6458 0 0 1 0 0 unknown 1 0.500231643922047 1 0.999536712155905 hm5C_site_9258 DeepMRMD:1;iRNA_m5C:0.999536712155905 9259 chr6 28715523 28715523 1 + C G rs369041602 28715531 + 28715511 28715551 41 TCTACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGA TCTACCCAGGGCGTGGATAGCTCAGTTGGTAGAACATCAGA < 41bp 1 0.663228376299088 1 0.450037777423859 experiment 0.673543247401824 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715531 chr6:28715523 . . 0 13 hm5C_associated_SNPs_6459 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9259 DeepMRMD:1;iRNA_m5C:0.999536712157815 9260 chr6 28715523 28715523 1 + C G rs369041602 28715533 + 28715513 28715553 41 TACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGACT TACCCAGGGCGTGGATAGCTCAGTTGGTAGAACATCAGACT < 41bp 1 0.417688098729257 1 0.350343704223633 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715533 chr6:28715523 . . 0 11 hm5C_associated_SNPs_6460 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9260 DeepMRMD:1;iRNA_m5C:0.999536712157815 9261 chr6 28715537 28715537 1 + T A rs6909102 28715522 + 28715502 28715542 41 TGGGTTGCGTCTACCCAGGGCCTGGATAGCTCAGTTGGTAG TGGGTTGCGTCTACCCAGGGCCTGGATAGCTCAGTAGGTAG < 41bp 1 0.215710062732925 1 0.159472703933716 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715522 chr6:28715537 . . 0 36 hm5C_associated_SNPs_6461 0 0 1 0 0 unknown 1 0.500231643921161 1 0.999536712157678 hm5C_site_9261 DeepMRMD:1;iRNA_m5C:0.999536712157678 9262 chr6 28715537 28715537 1 + T A rs6909102 28715523 + 28715503 28715543 41 GGGTTGCGTCTACCCAGGGCCTGGATAGCTCAGTTGGTAGA GGGTTGCGTCTACCCAGGGCCTGGATAGCTCAGTAGGTAGA < 41bp 1 0.60515669533328 1 0.51784747838974 experiment 0.789686609333439 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715523 chr6:28715537 . . 0 35 hm5C_associated_SNPs_6462 0 0 1 0 0 unknown 1 0.500231643921092 0.96430504322052 0.999536712157815 hm5C_site_9262 DeepMRMD:0.96430504322052;iRNA_m5C:0.999536712157815 9263 chr6 28715537 28715537 1 + T A rs6909102 28715531 + 28715511 28715551 41 TCTACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGA TCTACCCAGGGCCTGGATAGCTCAGTAGGTAGAACATCAGA < 41bp 1 0.617068966721744 1 0.378814250230789 experiment 0.765862066556511 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715531 chr6:28715537 . . 0 27 hm5C_associated_SNPs_6463 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9263 DeepMRMD:1;iRNA_m5C:0.999536712157815 9264 chr6 28715537 28715537 1 + T A rs6909102 28715533 + 28715513 28715553 41 TACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGACT TACCCAGGGCCTGGATAGCTCAGTAGGTAGAACATCAGACT < 41bp 1 0.633801716976559 1 0.534081339836121 experiment 0.732396566046883 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715533 chr6:28715537 . . 0 25 hm5C_associated_SNPs_6464 0 0 1 0 0 unknown 1 0.500231643921092 0.931837320327758 0.999536712157815 hm5C_site_9264 DeepMRMD:0.931837320327758;iRNA_m5C:0.999536712157815 9265 chr6 28715537 28715537 1 + T A rs6909102 28715545 + 28715525 28715565 41 GGATAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACG GGATAGCTCAGTAGGTAGAACATCAGACTTTTAATCTGACG < 41bp 1 0.405647228902287 1 0.10860550403595 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715545 chr6:28715537 . . 0 13 hm5C_associated_SNPs_6465 0 0 1 0 0 unknown 1 0.500232491234289 1 0.999535017531422 hm5C_site_9265 DeepMRMD:1;iRNA_m5C:0.999535017531422 9266 chr6 28715537 28715537 1 + T A rs6909102 28715548 + 28715528 28715568 41 TAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTG TAGCTCAGTAGGTAGAACATCAGACTTTTAATCTGACGGTG < 41bp 1 0.419346733614239 1 0.411146879196167 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715548 chr6:28715537 . . 0 10 hm5C_associated_SNPs_6466 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_9266 DeepMRMD:1;iRNA_m5C:0.999536712157814 9267 chr6 28715537 28715537 1 + T A rs6909102 28715552 + 28715532 28715572 41 TCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTGCAGG TCAGTAGGTAGAACATCAGACTTTTAATCTGACGGTGCAGG < 41bp 1 0.0701689193226492 1 0.0135670602321625 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715552 chr6:28715537 . . 0 6 hm5C_associated_SNPs_6467 0 0 1 0 0 unknown 1 0.500231643921122 1 0.999536712157757 hm5C_site_9267 DeepMRMD:1;iRNA_m5C:0.999536712157757 9268 chr6 28715545 28715545 1 + C A rs7764775 28715531 + 28715511 28715551 41 TCTACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGA TCTACCCAGGGCCTGGATAGCTCAGTTGGTAGAAAATCAGA < 41bp 1 0.600727220744065 1 0.420804172754288 experiment 0.798545558511871 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715531 chr6:28715545 . . 0 35 hm5C_associated_SNPs_6468 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9268 DeepMRMD:1;iRNA_m5C:0.999536712157815 9269 chr6 28715545 28715545 1 + C A rs7764775 28715533 + 28715513 28715553 41 TACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGACT TACCCAGGGCCTGGATAGCTCAGTTGGTAGAAAATCAGACT < 41bp 1 0.399902256842661 1 0.435682952404022 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715533 chr6:28715545 . . 0 33 hm5C_associated_SNPs_6469 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9269 DeepMRMD:1;iRNA_m5C:0.999536712157815 9270 chr6 28715545 28715545 1 + C A rs7764775 28715548 + 28715528 28715568 41 TAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTG TAGCTCAGTTGGTAGAAAATCAGACTTTTAATCTGACGGTG < 41bp 1 0.513751903913887 1 0.45495194196701 experiment 0.972496192172227 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715548 chr6:28715545 . . 0 18 hm5C_associated_SNPs_6470 0 0 1 0 0 unknown 1 0.500231643921806 1 0.999536712156388 hm5C_site_9270 DeepMRMD:1;iRNA_m5C:0.999536712156388 9271 chr6 28715545 28715545 1 + C A rs7764775 28715552 + 28715532 28715572 41 TCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTGCAGG TCAGTTGGTAGAAAATCAGACTTTTAATCTGACGGTGCAGG < 41bp 1 0.0601006143544259 1 0.0111713409423828 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715552 chr6:28715545 . . 0 14 hm5C_associated_SNPs_6471 0 0 1 0 0 unknown 1 0.500231643922022 1 0.999536712155955 hm5C_site_9271 DeepMRMD:1;iRNA_m5C:0.999536712155955 9272 chr6 28715545 28715545 1 + C A rs7764775 28715560 + 28715540 28715580 41 TAGAACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGT TAGAAAATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGT < 41bp 1 0.335999372135351 1 0.43696340918541 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715560 chr6:28715545 . . 0 6 hm5C_associated_SNPs_6472 0 0 1 0 0 unknown 1 0.500231645821741 1 0.999536708356517 hm5C_site_9272 DeepMRMD:1;iRNA_m5C:0.999536708356517 9273 chr6 28715545 28715545 1 + C A rs7764775 28715564 + 28715544 28715584 41 ACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCT AAATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCT < 41bp 1 0.304058483446768 1 0.179170280694962 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715564 chr6:28715545 . . 0 2 hm5C_associated_SNPs_6473 0 0 1 0 0 unknown 1 0.500231643912788 1 0.999536712174425 hm5C_site_9273 DeepMRMD:1;iRNA_m5C:0.999536712174425 9274 chr6 28715548 28715548 1 + C A rs190921203 28715531 + 28715511 28715551 41 TCTACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGA TCTACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATAAGA < 41bp 1 0.616535140765143 1 0.387610077857971 experiment 0.766929718469713 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715531 chr6:28715548 . . 0 38 hm5C_associated_SNPs_6474 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9274 DeepMRMD:1;iRNA_m5C:0.999536712157815 9275 chr6 28715548 28715548 1 + C A rs190921203 28715533 + 28715513 28715553 41 TACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGACT TACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATAAGACT < 41bp 1 0.357981864602734 1 0.542565822601318 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715533 chr6:28715548 . . 0 36 hm5C_associated_SNPs_6475 0 0 1 0 0 unknown 1 0.500231643921092 0.914868354797364 0.999536712157815 hm5C_site_9275 DeepMRMD:0.914868354797364;iRNA_m5C:0.999536712157815 9276 chr6 28715548 28715548 1 + C A rs190921203 28715545 + 28715525 28715565 41 GGATAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACG GGATAGCTCAGTTGGTAGAACATAAGACTTTTAATCTGACG < 41bp 1 0.379221137703325 1 0.140441060066223 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715545 chr6:28715548 . . 0 24 hm5C_associated_SNPs_6476 0 0 1 0 0 unknown 1 0.500231917688944 1 0.999536164622111 hm5C_site_9276 DeepMRMD:1;iRNA_m5C:0.999536164622111 9277 chr6 28715548 28715548 1 + C A rs190921203 28715552 + 28715532 28715572 41 TCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTGCAGG TCAGTTGGTAGAACATAAGACTTTTAATCTGACGGTGCAGG < 41bp 1 0.071206377979622 1 0.0122393071651459 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715552 chr6:28715548 . . 0 17 hm5C_associated_SNPs_6477 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9277 DeepMRMD:1;iRNA_m5C:0.999536712157815 9278 chr6 28715548 28715548 1 + C A rs190921203 28715560 + 28715540 28715580 41 TAGAACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGT TAGAACATAAGACTTTTAATCTGACGGTGCAGGGTTCAAGT < 41bp 1 0.322736002656355 1 0.483207523822784 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715560 chr6:28715548 . . 0 9 hm5C_associated_SNPs_6478 0 0 1 0 0 unknown 1 0.500231643921913 1 0.999536712156173 hm5C_site_9278 DeepMRMD:1;iRNA_m5C:0.999536712156173 9279 chr6 28715548 28715548 1 + C A rs190921203 28715564 + 28715544 28715584 41 ACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCT ACATAAGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCT < 41bp 1 0.347489984915564 1 0.176241517066956 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715564 chr6:28715548 . . 0 5 hm5C_associated_SNPs_6479 0 0 1 0 0 unknown 1 0.500231630652149 1 0.999536738695702 hm5C_site_9279 DeepMRMD:1;iRNA_m5C:0.999536738695702 9280 chr6 28715551 28715551 1 + A G rs573669670 28715531 + 28715511 28715551 41 TCTACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGA TCTACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGG < 41bp 1 0.639447821203435 1 0.379208326339722 experiment 0.721104357593129 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715531 chr6:28715551 . . 0 41 hm5C_associated_SNPs_6480 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9280 DeepMRMD:1;iRNA_m5C:0.999536712157815 9281 chr6 28715551 28715551 1 + A G rs573669670 28715533 + 28715513 28715553 41 TACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGACT TACCCAGGGCCTGGATAGCTCAGTTGGTAGAACATCAGGCT < 41bp 1 0.428358113183057 1 0.471527397632599 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715533 chr6:28715551 . . 0 39 hm5C_associated_SNPs_6481 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9281 DeepMRMD:1;iRNA_m5C:0.999536712157815 9282 chr6 28715551 28715551 1 + A G rs573669670 28715545 + 28715525 28715565 41 GGATAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACG GGATAGCTCAGTTGGTAGAACATCAGGCTTTTAATCTGACG < 41bp 1 0.41385087825053 1 0.0736556947231293 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715545 chr6:28715551 . . 0 27 hm5C_associated_SNPs_6482 0 0 1 0 0 unknown 1 0.500231643556213 1 0.999536712887573 hm5C_site_9282 DeepMRMD:1;iRNA_m5C:0.999536712887573 9283 chr6 28715551 28715551 1 + A G rs573669670 28715548 + 28715528 28715568 41 TAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTG TAGCTCAGTTGGTAGAACATCAGGCTTTTAATCTGACGGTG < 41bp 1 0.633856513758089 1 0.578749179840088 experiment 0.732286972483821 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715548 chr6:28715551 . . 0 24 hm5C_associated_SNPs_6483 0 0 1 0 0 unknown 1 0.500231643953545 0.842501640319824 0.999536712092911 hm5C_site_9283 DeepMRMD:0.842501640319824;iRNA_m5C:0.999536712092911 9284 chr6 28715551 28715551 1 + A G rs573669670 28715552 + 28715532 28715572 41 TCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTGCAGG TCAGTTGGTAGAACATCAGGCTTTTAATCTGACGGTGCAGG < 41bp 1 0.060011172726765 1 0.0103890597820282 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715552 chr6:28715551 . . 0 20 hm5C_associated_SNPs_6484 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9284 DeepMRMD:1;iRNA_m5C:0.999536712157815 9285 chr6 28715551 28715551 1 + A G rs573669670 28715560 + 28715540 28715580 41 TAGAACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGT TAGAACATCAGGCTTTTAATCTGACGGTGCAGGGTTCAAGT < 41bp 1 0.369631571854892 1 0.34956568479538 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715560 chr6:28715551 . . 0 12 hm5C_associated_SNPs_6485 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9285 DeepMRMD:1;iRNA_m5C:0.999536712157815 9286 chr6 28715551 28715551 1 + A G rs573669670 28715564 + 28715544 28715584 41 ACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCT ACATCAGGCTTTTAATCTGACGGTGCAGGGTTCAAGTCCCT < 41bp 1 0.36378147926634 1 0.208513706922531 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715564 chr6:28715551 . . 0 8 hm5C_associated_SNPs_6486 0 0 1 0 0 unknown 1 0.500231629954315 1 0.99953674009137 hm5C_site_9286 DeepMRMD:1;iRNA_m5C:0.99953674009137 9287 chr6 28715551 28715551 1 + A G rs573669670 28715569 + 28715549 28715589 41 AGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCTGTTCA AGGCTTTTAATCTGACGGTGCAGGGTTCAAGTCCCTGTTCA < 41bp 1 0.607873905194967 1 0.799299120903015 experiment 0.784252189610066 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715569 chr6:28715551 . . 0 3 hm5C_associated_SNPs_6487 0 0 1 0 0 unknown 1 0.500231636055601 0.40140175819397 0.999536727888799 hm5C_site_9287 DeepMRMD:0.40140175819397;iRNA_m5C:0.999536727888799 9288 chr6 28715564 28715564 1 + C A rs6929372 28715545 + 28715525 28715565 41 GGATAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACG GGATAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGAAG < 41bp 1 0.433909970378034 1 0.109236568212509 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715545 chr6:28715564 . . 0 40 hm5C_associated_SNPs_6488 0 0 1 0 0 unknown 1 0.500231644113991 1 0.999536711772018 hm5C_site_9288 DeepMRMD:1;iRNA_m5C:0.999536711772018 9289 chr6 28715564 28715564 1 + C A rs6929372 28715548 + 28715528 28715568 41 TAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTG TAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGAAGGTG < 41bp 1 0.411315345249904 1 0.286318004131317 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715548 chr6:28715564 . . 0 37 hm5C_associated_SNPs_6489 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9289 DeepMRMD:1;iRNA_m5C:0.999536712157815 9290 chr6 28715564 28715564 1 + C A rs6929372 28715552 + 28715532 28715572 41 TCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTGCAGG TCAGTTGGTAGAACATCAGACTTTTAATCTGAAGGTGCAGG < 41bp 1 0.0631192309641954 1 0.00880056619644165 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715552 chr6:28715564 . . 0 33 hm5C_associated_SNPs_6490 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9290 DeepMRMD:1;iRNA_m5C:0.999536712157815 9291 chr6 28715564 28715564 1 + C A rs6929372 28715560 + 28715540 28715580 41 TAGAACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGT TAGAACATCAGACTTTTAATCTGAAGGTGCAGGGTTCAAGT < 41bp 1 0.635919931142127 1 0.725741446018219 experiment 0.728160137715747 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715560 chr6:28715564 . . 0 25 hm5C_associated_SNPs_6491 0 0 1 0 0 unknown 1 0.500231176144622 0.548517107963562 0.999537647710756 hm5C_site_9291 DeepMRMD:0.548517107963562;iRNA_m5C:0.999537647710756 9292 chr6 28715564 28715564 1 + C A rs6929372 28715569 + 28715549 28715589 41 AGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCTGTTCA AGACTTTTAATCTGAAGGTGCAGGGTTCAAGTCCCTGTTCA < 41bp 1 0.626299466852517 1 0.844149827957153 experiment 0.747401066294965 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715569 chr6:28715564 . . 0 16 hm5C_associated_SNPs_6492 0 0 1 0 0 unknown 1 0.501159935299179 0.311700344085694 0.997680129401643 hm5C_site_9292 DeepMRMD:0.311700344085694;iRNA_m5C:0.997680129401643 9293 chr6 28715564 28715564 1 + C A rs6929372 28715581 + 28715561 28715601 41 TGACGGTGCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTT TGAAGGTGCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTT < 41bp 1 0.187786783881265 1 0.0215977728366852 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715581 chr6:28715564 . . 0 4 hm5C_associated_SNPs_6493 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9293 DeepMRMD:1;iRNA_m5C:0.999536712157815 9294 chr6 28715564 28715564 1 + C A rs6929372 28715582 + 28715562 28715602 41 GACGGTGCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTTG GAAGGTGCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTTG < 41bp 1 0.115107015410806 1 0.10936975479126 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715582 chr6:28715564 . . 0 3 hm5C_associated_SNPs_6494 0 0 1 0 0 unknown 1 0.500231644793734 1 0.999536710412532 hm5C_site_9294 DeepMRMD:1;iRNA_m5C:0.999536710412532 9295 chr6 28715566 28715566 1 + G A rs1233583 28715548 + 28715528 28715568 41 TAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTG TAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACGATG < 41bp 1 0.41432010224852 1 0.250524699687958 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715548 chr6:28715566 . . 0 39 hm5C_associated_SNPs_6495 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_9295 DeepMRMD:1;iRNA_m5C:0.999536712157812 9296 chr6 28715566 28715566 1 + G A rs1233583 28715552 + 28715532 28715572 41 TCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTGCAGG TCAGTTGGTAGAACATCAGACTTTTAATCTGACGATGCAGG < 41bp 1 0.0571881751561569 1 0.0146630704402924 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715552 chr6:28715566 . . 0 35 hm5C_associated_SNPs_6496 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_9296 DeepMRMD:1;iRNA_m5C:0.999536712157812 9297 chr6 28715566 28715566 1 + G A rs1233583 28715560 + 28715540 28715580 41 TAGAACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGT TAGAACATCAGACTTTTAATCTGACGATGCAGGGTTCAAGT < 41bp 1 0.334945859618577 1 0.253165036439896 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715560 chr6:28715566 . . 0 27 hm5C_associated_SNPs_6497 0 0 1 0 0 unknown 1 0.500231647884206 1 0.999536704231588 hm5C_site_9297 DeepMRMD:1;iRNA_m5C:0.999536704231588 9298 chr6 28715566 28715566 1 + G A rs1233583 28715564 + 28715544 28715584 41 ACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCT ACATCAGACTTTTAATCTGACGATGCAGGGTTCAAGTCCCT < 41bp 1 0.242070104405445 1 0.0871533751487732 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715564 chr6:28715566 . . 0 23 hm5C_associated_SNPs_6498 0 0 1 0 0 unknown 1 0.500231547670551 1 0.999536904658899 hm5C_site_9298 DeepMRMD:1;iRNA_m5C:0.999536904658899 9299 chr6 28715566 28715566 1 + G A rs1233583 28715569 + 28715549 28715589 41 AGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCTGTTCA AGACTTTTAATCTGACGATGCAGGGTTCAAGTCCCTGTTCA < 41bp 1 0.666436738136591 1 0.864475250244141 experiment 0.667126523726818 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715569 chr6:28715566 . . 0 18 hm5C_associated_SNPs_6499 0 0 1 0 0 unknown 1 0.50023161986856 0.271049499511718 0.99953676026288 hm5C_site_9299 DeepMRMD:0.271049499511718;iRNA_m5C:0.99953676026288 9300 chr6 28715566 28715566 1 + G A rs1233583 28715581 + 28715561 28715601 41 TGACGGTGCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTT TGACGATGCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTT < 41bp 1 0.186996409859163 1 0.0214119255542755 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715581 chr6:28715566 . . 0 6 hm5C_associated_SNPs_6500 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9300 DeepMRMD:1;iRNA_m5C:0.999536712157815 9301 chr6 28715566 28715566 1 + G A rs1233583 28715582 + 28715562 28715602 41 GACGGTGCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTTG GACGATGCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTTG < 41bp 1 0.108359625213148 1 0.128414690494537 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715582 chr6:28715566 . . 0 5 hm5C_associated_SNPs_6501 0 0 1 0 0 unknown 1 0.500231663252936 1 0.999536673494128 hm5C_site_9301 DeepMRMD:1;iRNA_m5C:0.999536673494128 9302 chr6 28715572 28715572 1 + G A rs183290826 28715552 + 28715532 28715572 41 TCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTGCAGG TCAGTTGGTAGAACATCAGACTTTTAATCTGACGGTGCAGA < 41bp 1 0.0638307434038587 1 0.010850578546524 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715552 chr6:28715572 . . 0 41 hm5C_associated_SNPs_6502 0 0 1 0 0 unknown 1 0.500231644280833 1 0.999536711438335 hm5C_site_9302 DeepMRMD:1;iRNA_m5C:0.999536711438335 9303 chr6 28715572 28715572 1 + G A rs183290826 28715560 + 28715540 28715580 41 TAGAACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGT TAGAACATCAGACTTTTAATCTGACGGTGCAGAGTTCAAGT < 41bp 1 0.329114408022195 1 0.286717534065247 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715560 chr6:28715572 . . 0 33 hm5C_associated_SNPs_6503 0 0 1 0 0 unknown 1 0.500231980331318 1 0.999536039337364 hm5C_site_9303 DeepMRMD:1;iRNA_m5C:0.999536039337364 9304 chr6 28715572 28715572 1 + G A rs183290826 28715564 + 28715544 28715584 41 ACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCT ACATCAGACTTTTAATCTGACGGTGCAGAGTTCAAGTCCCT < 41bp 1 0.31548931824236 1 0.309177100658417 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715564 chr6:28715572 . . 0 29 hm5C_associated_SNPs_6504 0 0 1 0 0 unknown 1 0.500231496933262 1 0.999537006133476 hm5C_site_9304 DeepMRMD:1;iRNA_m5C:0.999537006133476 9305 chr6 28715572 28715572 1 + G A rs183290826 28715569 + 28715549 28715589 41 AGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCTGTTCA AGACTTTTAATCTGACGGTGCAGAGTTCAAGTCCCTGTTCA < 41bp 1 0.41651661418708 1 0.356009304523468 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715569 chr6:28715572 . . 0 24 hm5C_associated_SNPs_6505 0 0 1 0 0 unknown 1 0.500231644243649 1 0.999536711512702 hm5C_site_9305 DeepMRMD:1;iRNA_m5C:0.999536711512702 9306 chr6 28715572 28715572 1 + G A rs183290826 28715581 + 28715561 28715601 41 TGACGGTGCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTT TGACGGTGCAGAGTTCAAGTCCCTGTTCAGGCGAAATATTT < 41bp 1 0.165198670389149 1 0.0189509391784668 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715581 chr6:28715572 . . 0 12 hm5C_associated_SNPs_6506 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9306 DeepMRMD:1;iRNA_m5C:0.999536712157815 9307 chr6 28715572 28715572 1 + G A rs183290826 28715582 + 28715562 28715602 41 GACGGTGCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTTG GACGGTGCAGAGTTCAAGTCCCTGTTCAGGCGAAATATTTG < 41bp 1 0.108730722901115 1 0.0824403762817383 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715582 chr6:28715572 . . 0 11 hm5C_associated_SNPs_6507 0 0 1 0 0 unknown 1 0.500231643981075 1 0.99953671203785 hm5C_site_9307 DeepMRMD:1;iRNA_m5C:0.99953671203785 9308 chr6 28715572 28715572 1 + G A rs183290826 28715588 + 28715568 28715608 41 GCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTTGTGTGTT GCAGAGTTCAAGTCCCTGTTCAGGCGAAATATTTGTGTGTT < 41bp 1 0.498779788542259 1 0.882076621055603 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715588 chr6:28715572 . . 0 5 hm5C_associated_SNPs_6508 0 0 1 0 0 unknown 1 0.500231643901086 0.235846757888794 0.999536712197828 hm5C_site_9308 DeepMRMD:0.235846757888794;iRNA_m5C:0.999536712197828 9309 chr6 28715583 28715583 1 + C T rs114227105 28715564 + 28715544 28715584 41 ACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCT ACATCAGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCTT < 41bp 1 0.331006562647292 1 0.170450031757355 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715564 chr6:28715583 . . 0 40 hm5C_associated_SNPs_6509 0 0 1 0 0 unknown 1 0.500231639486184 1 0.999536721027631 hm5C_site_9309 DeepMRMD:1;iRNA_m5C:0.999536721027631 9310 chr6 28715583 28715583 1 + C T rs114227105 28715569 + 28715549 28715589 41 AGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCCTGTTCA AGACTTTTAATCTGACGGTGCAGGGTTCAAGTCCTTGTTCA < 41bp 1 0.606129865801667 1 0.705526828765869 experiment 0.787740268396666 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715569 chr6:28715583 . . 0 35 hm5C_associated_SNPs_6510 0 0 1 0 0 unknown 1 0.500231643921513 0.588946342468262 0.999536712156974 hm5C_site_9310 DeepMRMD:0.588946342468262;iRNA_m5C:0.999536712156974 9311 chr6 28715583 28715583 1 + C T rs114227105 28715581 + 28715561 28715601 41 TGACGGTGCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTT TGACGGTGCAGGGTTCAAGTCCTTGTTCAGGCGAAATATTT < 41bp 1 0.0958964195649766 1 0.0188327133655548 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715581 chr6:28715583 . . 0 23 hm5C_associated_SNPs_6511 0 0 1 0 0 unknown 1 0.500231643971665 1 0.99953671205667 hm5C_site_9311 DeepMRMD:1;iRNA_m5C:0.99953671205667 9312 chr6 28715583 28715583 1 + C T rs114227105 28715582 + 28715562 28715602 41 GACGGTGCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTTG GACGGTGCAGGGTTCAAGTCCTTGTTCAGGCGAAATATTTG < 41bp 1 0.211832623323975 1 0.15893480181694 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715582 chr6:28715583 . . 0 22 hm5C_associated_SNPs_6512 0 0 1 0 0 unknown 1 0.500231644149604 1 0.999536711700792 hm5C_site_9312 DeepMRMD:1;iRNA_m5C:0.999536711700792 9313 chr6 28715583 28715583 1 + C T rs114227105 28715588 + 28715568 28715608 41 GCAGGGTTCAAGTCCCTGTTCAGGCGAAATATTTGTGTGTT GCAGGGTTCAAGTCCTTGTTCAGGCGAAATATTTGTGTGTT < 41bp 1 0.532464312812421 1 0.940068542957306 experiment 0.935071374375157 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00533;LINC01623 ENSG00000237425;ENSG00000221191 intergenic Human other chr6:28715588 chr6:28715583 . . 0 16 hm5C_associated_SNPs_6513 0 0 1 0 0 unknown 1 0.500231643919147 0.119862914085388 0.999536712161705 hm5C_site_9313 DeepMRMD:0.119862914085388;iRNA_m5C:0.999536712161705 9314 chr6 28849200 28849200 1 + G A rs187763979 28849199 + 28849179 28849219 41 ATGGATAAGGCGTCTGATTCCGGATCAGAAGATTGAGGGTT ATGGATAAGGCGTCTGATTCCAGATCAGAAGATTGAGGGTT < 41bp 1 0.50282607664996 1 0.413192540407181 experiment 0.994347846700079 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01623;HCG14 ENSG00000225595;ENSG00000233366 intergenic Human other chr6:28849199 chr6:28849200 . . 0 22 hm5C_associated_SNPs_6514 0 0 1 0 0 unknown 1 0.500231643921113 1 0.999536712157775 hm5C_site_9314 DeepMRMD:1;iRNA_m5C:0.999536712157775 9315 chr6 28849200 28849200 1 + G A rs187763979 28849204 + 28849184 28849224 41 TAAGGCGTCTGATTCCGGATCAGAAGATTGAGGGTTCGAGT TAAGGCGTCTGATTCCAGATCAGAAGATTGAGGGTTCGAGT < 41bp 1 0.676812427349758 1 0.359048038721085 experiment 0.646375145300483 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01623;HCG14 ENSG00000225595;ENSG00000233366 intergenic Human other chr6:28849204 chr6:28849200 . . 0 17 hm5C_associated_SNPs_6515 0 0 1 0 0 unknown 1 0.500231645474388 1 0.999536709051225 hm5C_site_9315 DeepMRMD:1;iRNA_m5C:0.999536709051225 9316 chr6 28849200 28849200 1 + G A rs187763979 28849220 + 28849200 28849240 41 GGATCAGAAGATTGAGGGTTCGAGTCCCTTCGTGGTCGTCG AGATCAGAAGATTGAGGGTTCGAGTCCCTTCGTGGTCGTCG < 41bp 1 0.404477587554762 1 0.131667792797089 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01623;HCG14 ENSG00000225595;ENSG00000233366 intergenic Human other chr6:28849220 chr6:28849200 . . 0 1 hm5C_associated_SNPs_6516 0 0 1 0 0 unknown 1 0.500231643921104 1 0.999536712157791 hm5C_site_9316 DeepMRMD:1;iRNA_m5C:0.999536712157791 9317 chr6 28908871 28908871 1 + G A rs561405553 28908857 + 28908837 28908877 41 TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGCTTGGCTTCC TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGCTTAGCTTCC < 41bp 1 0.530080953344419 1 0.546150147914886 experiment 0.939838093311163 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908857 chr6:28908871 . . 0 35 hm5C_associated_SNPs_6517 0 0 1 0 0 unknown 1 0.50023164399453 0.907699704170228 0.999536712010939 hm5C_site_9317 DeepMRMD:0.907699704170228;iRNA_m5C:0.999536712010939 9318 chr6 28908871 28908871 1 + G A rs561405553 28908858 + 28908838 28908878 41 GGCCGAGTGGTCTAAGGCGCCAGACTCAAGCTTGGCTTCCT GGCCGAGTGGTCTAAGGCGCCAGACTCAAGCTTAGCTTCCT < 41bp 1 0.317900523671468 1 0.531378388404846 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908858 chr6:28908871 . . 0 34 hm5C_associated_SNPs_6518 0 0 1 0 0 unknown 1 0.500231643921092 0.937243223190308 0.999536712157815 hm5C_site_9318 DeepMRMD:0.937243223190308;iRNA_m5C:0.999536712157815 9319 chr6 28908871 28908871 1 + G A rs561405553 28908862 + 28908842 28908882 41 GAGTGGTCTAAGGCGCCAGACTCAAGCTTGGCTTCCTCGTG GAGTGGTCTAAGGCGCCAGACTCAAGCTTAGCTTCCTCGTG < 41bp 1 0.651186185260727 1 0.799449980258942 experiment 0.697627629478547 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908862 chr6:28908871 . . 0 30 hm5C_associated_SNPs_6519 0 0 1 0 0 unknown 1 0.50023164397313 0.401100039482116 0.99953671205374 hm5C_site_9319 DeepMRMD:0.401100039482116;iRNA_m5C:0.99953671205374 9320 chr6 28908871 28908871 1 + G A rs561405553 28908864 + 28908844 28908884 41 GTGGTCTAAGGCGCCAGACTCAAGCTTGGCTTCCTCGTGTT GTGGTCTAAGGCGCCAGACTCAAGCTTAGCTTCCTCGTGTT < 41bp 1 0.665523961600955 1 0.829467535018921 experiment 0.66895207679809 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908864 chr6:28908871 . . 0 28 hm5C_associated_SNPs_6520 0 0 1 0 0 unknown 1 0.500231643913084 0.341064929962158 0.999536712173831 hm5C_site_9320 DeepMRMD:0.341064929962158;iRNA_m5C:0.999536712173831 9321 chr6 28908871 28908871 1 + G A rs561405553 28908868 + 28908848 28908888 41 TCTAAGGCGCCAGACTCAAGCTTGGCTTCCTCGTGTTGAGG TCTAAGGCGCCAGACTCAAGCTTAGCTTCCTCGTGTTGAGG < 41bp 1 0.240189636885845 1 0.138229668140411 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908868 chr6:28908871 . . 0 24 hm5C_associated_SNPs_6521 0 0 1 0 0 unknown 1 0.500239500473199 1 0.999520999053602 hm5C_site_9321 DeepMRMD:1;iRNA_m5C:0.999520999053602 9322 chr6 28908871 28908871 1 + G A rs561405553 28908873 + 28908853 28908893 41 GGCGCCAGACTCAAGCTTGGCTTCCTCGTGTTGAGGATTCT GGCGCCAGACTCAAGCTTAGCTTCCTCGTGTTGAGGATTCT < 41bp 1 0.0915380683655583 1 0.0498633980751038 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908873 chr6:28908871 . . 0 19 hm5C_associated_SNPs_6522 0 0 1 0 0 unknown 1 0.500231643913954 1 0.999536712172092 hm5C_site_9322 DeepMRMD:1;iRNA_m5C:0.999536712172092 9323 chr6 28908871 28908871 1 + G A rs561405553 28908876 + 28908856 28908896 41 GCCAGACTCAAGCTTGGCTTCCTCGTGTTGAGGATTCTGGT GCCAGACTCAAGCTTAGCTTCCTCGTGTTGAGGATTCTGGT < 41bp 1 0.116283268102252 1 0.121373474597931 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908876 chr6:28908871 . . 0 16 hm5C_associated_SNPs_6523 0 0 1 0 0 unknown 1 0.50023164651817 1 0.999536706963659 hm5C_site_9323 DeepMRMD:1;iRNA_m5C:0.999536706963659 9324 chr6 28908871 28908871 1 + G A rs561405553 28908877 + 28908857 28908897 41 CCAGACTCAAGCTTGGCTTCCTCGTGTTGAGGATTCTGGTC CCAGACTCAAGCTTAGCTTCCTCGTGTTGAGGATTCTGGTC < 41bp 1 0.627747404651179 1 0.173450857400894 experiment 0.744505190697643 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908877 chr6:28908871 . . 0 15 hm5C_associated_SNPs_6524 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9324 DeepMRMD:1;iRNA_m5C:0.999536712157815 9325 chr6 28908871 28908871 1 + G A rs561405553 28908879 + 28908859 28908899 41 AGACTCAAGCTTGGCTTCCTCGTGTTGAGGATTCTGGTCTC AGACTCAAGCTTAGCTTCCTCGTGTTGAGGATTCTGGTCTC < 41bp 1 0.635287705192453 1 0.56265664100647 experiment 0.729424589615093 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908879 chr6:28908871 . . 0 13 hm5C_associated_SNPs_6525 0 0 1 0 0 unknown 1 0.500231643919784 0.87468671798706 0.999536712160432 hm5C_site_9325 DeepMRMD:0.87468671798706;iRNA_m5C:0.999536712160432 9326 chr6 28908873 28908873 1 + C A rs115765101 28908857 + 28908837 28908877 41 TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGCTTGGCTTCC TGGCCGAGTGGTCTAAGGCGCCAGACTCAAGCTTGGATTCC < 41bp 1 0.531030206992004 1 0.308385968208313 experiment 0.937939586015991 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908857 chr6:28908873 . . 0 37 hm5C_associated_SNPs_6526 0 0 1 0 0 unknown 1 0.500231643910706 1 0.999536712178588 hm5C_site_9326 DeepMRMD:1;iRNA_m5C:0.999536712178588 9327 chr6 28908873 28908873 1 + C A rs115765101 28908858 + 28908838 28908878 41 GGCCGAGTGGTCTAAGGCGCCAGACTCAAGCTTGGCTTCCT GGCCGAGTGGTCTAAGGCGCCAGACTCAAGCTTGGATTCCT < 41bp 1 0.298740796543105 1 0.433180153369904 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908858 chr6:28908873 . . 0 36 hm5C_associated_SNPs_6527 0 0 1 0 0 unknown 1 0.500231643921087 1 0.999536712157825 hm5C_site_9327 DeepMRMD:1;iRNA_m5C:0.999536712157825 9328 chr6 28908873 28908873 1 + C A rs115765101 28908862 + 28908842 28908882 41 GAGTGGTCTAAGGCGCCAGACTCAAGCTTGGCTTCCTCGTG GAGTGGTCTAAGGCGCCAGACTCAAGCTTGGATTCCTCGTG < 41bp 1 0.669512748908307 1 0.906908750534058 experiment 0.660974502183385 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908862 chr6:28908873 . . 0 32 hm5C_associated_SNPs_6528 0 0 1 0 0 unknown 1 0.500231643915712 0.186182498931884 0.999536712168576 hm5C_site_9328 DeepMRMD:0.186182498931884;iRNA_m5C:0.999536712168576 9329 chr6 28908873 28908873 1 + C A rs115765101 28908864 + 28908844 28908884 41 GTGGTCTAAGGCGCCAGACTCAAGCTTGGCTTCCTCGTGTT GTGGTCTAAGGCGCCAGACTCAAGCTTGGATTCCTCGTGTT < 41bp 1 0.674668509146668 1 0.8374844789505 experiment 0.650662981706664 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908864 chr6:28908873 . . 0 30 hm5C_associated_SNPs_6529 0 0 1 0 0 unknown 1 0.500231643909807 0.325031042099 0.999536712180386 hm5C_site_9329 DeepMRMD:0.325031042099;iRNA_m5C:0.999536712180386 9330 chr6 28908873 28908873 1 + C A rs115765101 28908868 + 28908848 28908888 41 TCTAAGGCGCCAGACTCAAGCTTGGCTTCCTCGTGTTGAGG TCTAAGGCGCCAGACTCAAGCTTGGATTCCTCGTGTTGAGG < 41bp 1 0.512719408783683 1 0.394286274909973 experiment 0.974561182432633 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908868 chr6:28908873 . . 0 26 hm5C_associated_SNPs_6530 0 0 1 0 0 unknown 1 0.500231643904951 1 0.999536712190098 hm5C_site_9330 DeepMRMD:1;iRNA_m5C:0.999536712190098 9331 chr6 28908873 28908873 1 + C A rs115765101 28908876 + 28908856 28908896 41 GCCAGACTCAAGCTTGGCTTCCTCGTGTTGAGGATTCTGGT GCCAGACTCAAGCTTGGATTCCTCGTGTTGAGGATTCTGGT < 41bp 1 0.17458274939858 1 0.284501910209656 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908876 chr6:28908873 . . 0 18 hm5C_associated_SNPs_6531 0 0 1 0 0 unknown 1 0.50023323667702 1 0.999533526645959 hm5C_site_9331 DeepMRMD:1;iRNA_m5C:0.999533526645959 9332 chr6 28908873 28908873 1 + C A rs115765101 28908877 + 28908857 28908897 41 CCAGACTCAAGCTTGGCTTCCTCGTGTTGAGGATTCTGGTC CCAGACTCAAGCTTGGATTCCTCGTGTTGAGGATTCTGGTC < 41bp 1 0.670873381345628 1 0.176388770341873 experiment 0.658253237308744 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908877 chr6:28908873 . . 0 17 hm5C_associated_SNPs_6532 0 0 1 0 0 unknown 1 0.500231658708986 1 0.999536682582028 hm5C_site_9332 DeepMRMD:1;iRNA_m5C:0.999536682582028 9333 chr6 28908873 28908873 1 + C A rs115765101 28908879 + 28908859 28908899 41 AGACTCAAGCTTGGCTTCCTCGTGTTGAGGATTCTGGTCTC AGACTCAAGCTTGGATTCCTCGTGTTGAGGATTCTGGTCTC < 41bp 1 0.696838788409797 1 0.404260993003845 experiment 0.606322423180405 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908879 chr6:28908873 . . 0 15 hm5C_associated_SNPs_6533 0 0 1 0 0 unknown 1 0.500231439844375 1 0.999537120311249 hm5C_site_9333 DeepMRMD:1;iRNA_m5C:0.999537120311249 9334 chr6 28908884 28908884 1 + T A rs186807724 28908868 + 28908848 28908888 41 TCTAAGGCGCCAGACTCAAGCTTGGCTTCCTCGTGTTGAGG TCTAAGGCGCCAGACTCAAGCTTGGCTTCCTCGTGTAGAGG < 41bp 1 0.50081436063761 1 0.212281227111816 experiment 0.99837127872478 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908868 chr6:28908884 . . 0 37 hm5C_associated_SNPs_6536 0 0 1 0 0 unknown 1 0.500231643942614 1 0.999536712114772 hm5C_site_9334 DeepMRMD:1;iRNA_m5C:0.999536712114772 9335 chr6 28908884 28908884 1 + T A rs186807724 28908873 + 28908853 28908893 41 GGCGCCAGACTCAAGCTTGGCTTCCTCGTGTTGAGGATTCT GGCGCCAGACTCAAGCTTGGCTTCCTCGTGTAGAGGATTCT < 41bp 1 0.0634899186227859 1 0.0494204461574554 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908873 chr6:28908884 . . 0 32 hm5C_associated_SNPs_6537 0 0 1 0 0 unknown 1 0.50023164393144 1 0.999536712137119 hm5C_site_9335 DeepMRMD:1;iRNA_m5C:0.999536712137119 9336 chr6 28908884 28908884 1 + T A rs186807724 28908876 + 28908856 28908896 41 GCCAGACTCAAGCTTGGCTTCCTCGTGTTGAGGATTCTGGT GCCAGACTCAAGCTTGGCTTCCTCGTGTAGAGGATTCTGGT < 41bp 1 0.131597848771821 1 0.103273302316666 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908876 chr6:28908884 . . 0 29 hm5C_associated_SNPs_6538 0 0 1 0 0 unknown 1 0.500231657878815 1 0.999536684242369 hm5C_site_9336 DeepMRMD:1;iRNA_m5C:0.999536684242369 9337 chr6 28908884 28908884 1 + T A rs186807724 28908877 + 28908857 28908897 41 CCAGACTCAAGCTTGGCTTCCTCGTGTTGAGGATTCTGGTC CCAGACTCAAGCTTGGCTTCCTCGTGTAGAGGATTCTGGTC < 41bp 1 0.662674439561618 1 0.0823101103305817 experiment 0.674651120876764 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908877 chr6:28908884 . . 0 28 hm5C_associated_SNPs_6539 0 0 1 0 0 unknown 1 0.500231643921218 1 0.999536712157563 hm5C_site_9337 DeepMRMD:1;iRNA_m5C:0.999536712157563 9338 chr6 28908884 28908884 1 + T A rs186807724 28908879 + 28908859 28908899 41 AGACTCAAGCTTGGCTTCCTCGTGTTGAGGATTCTGGTCTC AGACTCAAGCTTGGCTTCCTCGTGTAGAGGATTCTGGTCTC < 41bp 1 0.68498135088178 1 0.700316429138184 experiment 0.630037298236441 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908879 chr6:28908884 . . 0 26 hm5C_associated_SNPs_6540 0 0 1 0 0 unknown 1 0.500226334027125 0.599367141723632 0.99954733194575 hm5C_site_9338 DeepMRMD:0.599367141723632;iRNA_m5C:0.99954733194575 9339 chr6 28908884 28908884 1 + T A rs186807724 28908899 + 28908879 28908919 41 CGTGTTGAGGATTCTGGTCTCCAATGGAGGCGTGGGTTCGA CGTGTAGAGGATTCTGGTCTCCAATGGAGGCGTGGGTTCGA < 41bp 1 0.215200923686091 1 0.776187181472778 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908899 chr6:28908884 . . 0 6 hm5C_associated_SNPs_6543 0 0 1 0 0 unknown 1 0.500231643921092 0.447625637054444 0.999536712157815 hm5C_site_9339 DeepMRMD:0.447625637054444;iRNA_m5C:0.999536712157815 9340 chr6 28908884 28908884 1 + T A rs186807724 28908900 + 28908880 28908920 41 GTGTTGAGGATTCTGGTCTCCAATGGAGGCGTGGGTTCGAA GTGTAGAGGATTCTGGTCTCCAATGGAGGCGTGGGTTCGAA < 41bp 1 0.474677155162901 1 0.4698126912117 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908900 chr6:28908884 . . 0 5 hm5C_associated_SNPs_6544 0 0 1 0 0 unknown 1 0.500231643747932 1 0.999536712504135 hm5C_site_9340 DeepMRMD:1;iRNA_m5C:0.999536712504135 9341 chr6 28908903 28908903 1 + T C rs568260917 28908897 + 28908877 28908917 41 CTCGTGTTGAGGATTCTGGTCTCCAATGGAGGCGTGGGTTC CTCGTGTTGAGGATTCTGGTCTCCAACGGAGGCGTGGGTTC < 41bp 1 0.670066147983455 1 0.952813923358917 experiment 0.65986770403309 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908897 chr6:28908903 . . 0 27 hm5C_associated_SNPs_6546 0 0 1 0 0 unknown 1 0.500231609117774 0.094372153282166 0.999536781764452 hm5C_site_9341 DeepMRMD:0.094372153282166;iRNA_m5C:0.999536781764452 9342 chr6 28908903 28908903 1 + T C rs568260917 28908899 + 28908879 28908919 41 CGTGTTGAGGATTCTGGTCTCCAATGGAGGCGTGGGTTCGA CGTGTTGAGGATTCTGGTCTCCAACGGAGGCGTGGGTTCGA < 41bp 1 0.147157834476621 1 0.529223144054413 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908899 chr6:28908903 . . 0 25 hm5C_associated_SNPs_6547 0 0 1 0 0 unknown 1 0.500231643921092 0.941553711891174 0.999536712157815 hm5C_site_9342 DeepMRMD:0.941553711891174;iRNA_m5C:0.999536712157815 9343 chr6 28908903 28908903 1 + T C rs568260917 28908900 + 28908880 28908920 41 GTGTTGAGGATTCTGGTCTCCAATGGAGGCGTGGGTTCGAA GTGTTGAGGATTCTGGTCTCCAACGGAGGCGTGGGTTCGAA < 41bp 1 0.644511547372711 1 0.250674962997437 experiment 0.710976905254578 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908900 chr6:28908903 . . 0 24 hm5C_associated_SNPs_6548 0 0 1 0 0 unknown 1 0.500231643921114 1 0.999536712157771 hm5C_site_9343 DeepMRMD:1;iRNA_m5C:0.999536712157771 9344 chr6 28908903 28908903 1 + T C rs568260917 28908917 + 28908897 28908937 41 CTCCAATGGAGGCGTGGGTTCGAATCCCACTTCTGACACAA CTCCAACGGAGGCGTGGGTTCGAATCCCACTTCTGACACAA < 41bp 1 0.332587756047952 1 0.29418820142746 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908917 chr6:28908903 . . 0 7 hm5C_associated_SNPs_6550 0 0 1 0 0 unknown 1 0.500231649571127 1 0.999536700857745 hm5C_site_9344 DeepMRMD:1;iRNA_m5C:0.999536700857745 9345 chr6 28908903 28908903 1 + T C rs568260917 28908922 + 28908902 28908942 41 ATGGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATC ACGGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATC < 41bp 1 0.152481638338913 1 0.0812102854251862 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908922 chr6:28908903 . . 0 2 hm5C_associated_SNPs_6551 0 0 1 0 0 unknown 1 0.500231643939128 1 0.999536712121744 hm5C_site_9345 DeepMRMD:1;iRNA_m5C:0.999536712121744 9346 chr6 28908903 28908903 1 + T C rs568260917 28908923 + 28908903 28908943 41 TGGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATCT CGGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATCT < 41bp 1 0.124162285033495 1 0.110442280769348 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908923 chr6:28908903 . . 0 1 hm5C_associated_SNPs_6552 0 0 1 0 0 unknown 1 0.500231612103612 1 0.999536775792776 hm5C_site_9346 DeepMRMD:1;iRNA_m5C:0.999536775792776 9347 chr6 28908904 28908904 1 + G A rs62407911 28908899 + 28908879 28908919 41 CGTGTTGAGGATTCTGGTCTCCAATGGAGGCGTGGGTTCGA CGTGTTGAGGATTCTGGTCTCCAATAGAGGCGTGGGTTCGA < 41bp 1 0.14986166055369 1 0.756677031517029 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908899 chr6:28908904 . . 0 26 hm5C_associated_SNPs_6555 0 0 1 0 0 unknown 1 0.500231643921114 0.486645936965942 0.999536712157773 hm5C_site_9347 DeepMRMD:0.486645936965942;iRNA_m5C:0.999536712157773 9348 chr6 28908904 28908904 1 + G A rs62407911 28908900 + 28908880 28908920 41 GTGTTGAGGATTCTGGTCTCCAATGGAGGCGTGGGTTCGAA GTGTTGAGGATTCTGGTCTCCAATAGAGGCGTGGGTTCGAA < 41bp 1 0.546648291818157 1 0.252775907516479 experiment 0.906703416363686 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908900 chr6:28908904 . . 0 25 hm5C_associated_SNPs_6556 0 0 1 0 0 unknown 1 0.500233467909523 1 0.999533064180954 hm5C_site_9348 DeepMRMD:1;iRNA_m5C:0.999533064180954 9349 chr6 28908904 28908904 1 + G A rs62407911 28908909 + 28908889 28908929 41 ATTCTGGTCTCCAATGGAGGCGTGGGTTCGAATCCCACTTC ATTCTGGTCTCCAATAGAGGCGTGGGTTCGAATCCCACTTC < 41bp 1 0.665537717626415 1 0.398164331912994 experiment 0.66892456474717 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908909 chr6:28908904 . . 0 16 hm5C_associated_SNPs_6557 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_9349 DeepMRMD:1;iRNA_m5C:0.999536712157814 9350 chr6 28908904 28908904 1 + G A rs62407911 28908917 + 28908897 28908937 41 CTCCAATGGAGGCGTGGGTTCGAATCCCACTTCTGACACAA CTCCAATAGAGGCGTGGGTTCGAATCCCACTTCTGACACAA < 41bp 1 0.274776008395532 1 0.325863599777222 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908917 chr6:28908904 . . 0 8 hm5C_associated_SNPs_6558 0 0 1 0 0 unknown 1 0.500231643921099 1 0.999536712157801 hm5C_site_9350 DeepMRMD:1;iRNA_m5C:0.999536712157801 9351 chr6 28908904 28908904 1 + G A rs62407911 28908922 + 28908902 28908942 41 ATGGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATC ATAGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATC < 41bp 1 0.139874696550169 1 0.0901341736316681 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908922 chr6:28908904 . . 0 3 hm5C_associated_SNPs_6559 0 0 1 0 0 unknown 1 0.500232428214592 1 0.999535143570816 hm5C_site_9351 DeepMRMD:1;iRNA_m5C:0.999535143570816 9352 chr6 28908904 28908904 1 + G A rs62407911 28908923 + 28908903 28908943 41 TGGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATCT TAGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATCT < 41bp 1 0.111501555069773 1 0.0976963043212891 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908923 chr6:28908904 . . 0 2 hm5C_associated_SNPs_6560 0 0 1 0 0 unknown 1 0.500231643667135 1 0.999536712665731 hm5C_site_9352 DeepMRMD:1;iRNA_m5C:0.999536712665731 9353 chr6 28908904 28908904 1 + G A rs62407911 28908924 + 28908904 28908944 41 GGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATCTT AGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATCTT < 41bp 1 0.174103493700418 1 0.0438666343688965 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908924 chr6:28908904 . . 0 1 hm5C_associated_SNPs_6561 0 0 1 0 0 unknown 1 0.500231644361935 1 0.99953671127613 hm5C_site_9353 DeepMRMD:1;iRNA_m5C:0.99953671127613 9354 chr6 28908909 28908909 1 + C G rs58800808 28908899 + 28908879 28908919 41 CGTGTTGAGGATTCTGGTCTCCAATGGAGGCGTGGGTTCGA CGTGTTGAGGATTCTGGTCTCCAATGGAGGGGTGGGTTCGA < 41bp 1 0.183585007422526 1 0.747731626033783 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908899 chr6:28908909 . . 0 31 hm5C_associated_SNPs_6564 0 0 1 0 0 unknown 1 0.50023164391445 0.504536747932434 0.9995367121711 hm5C_site_9354 DeepMRMD:0.504536747932434;iRNA_m5C:0.9995367121711 9355 chr6 28908909 28908909 1 + C G rs58800808 28908900 + 28908880 28908920 41 GTGTTGAGGATTCTGGTCTCCAATGGAGGCGTGGGTTCGAA GTGTTGAGGATTCTGGTCTCCAATGGAGGGGTGGGTTCGAA < 41bp 1 0.419742826074098 1 0.221477419137955 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908900 chr6:28908909 . . 0 30 hm5C_associated_SNPs_6565 0 0 1 0 0 unknown 1 0.500231643124394 1 0.999536713751213 hm5C_site_9355 DeepMRMD:1;iRNA_m5C:0.999536713751213 9356 chr6 28908909 28908909 1 + C G rs58800808 28908917 + 28908897 28908937 41 CTCCAATGGAGGCGTGGGTTCGAATCCCACTTCTGACACAA CTCCAATGGAGGGGTGGGTTCGAATCCCACTTCTGACACAA < 41bp 1 0.344226889622433 1 0.40205180644989 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908917 chr6:28908909 . . 0 13 hm5C_associated_SNPs_6566 0 0 1 0 0 unknown 1 0.500231643921216 1 0.999536712157568 hm5C_site_9356 DeepMRMD:1;iRNA_m5C:0.999536712157568 9357 chr6 28908909 28908909 1 + C G rs58800808 28908922 + 28908902 28908942 41 ATGGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATC ATGGAGGGGTGGGTTCGAATCCCACTTCTGACACAACTATC < 41bp 1 0.182939729628108 1 0.123849838972092 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908922 chr6:28908909 . . 0 8 hm5C_associated_SNPs_6567 0 0 1 0 0 unknown 1 0.500231643921545 1 0.999536712156911 hm5C_site_9357 DeepMRMD:1;iRNA_m5C:0.999536712156911 9358 chr6 28908909 28908909 1 + C G rs58800808 28908923 + 28908903 28908943 41 TGGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATCT TGGAGGGGTGGGTTCGAATCCCACTTCTGACACAACTATCT < 41bp 1 0.138175876774266 1 0.108037501573563 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908923 chr6:28908909 . . 0 7 hm5C_associated_SNPs_6568 0 0 1 0 0 unknown 1 0.500231632002598 1 0.999536735994804 hm5C_site_9358 DeepMRMD:1;iRNA_m5C:0.999536735994804 9359 chr6 28908909 28908909 1 + C G rs58800808 28908924 + 28908904 28908944 41 GGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATCTT GGAGGGGTGGGTTCGAATCCCACTTCTGACACAACTATCTT < 41bp 1 0.208818293280923 1 0.0496914386749268 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908924 chr6:28908909 . . 0 6 hm5C_associated_SNPs_6569 0 0 1 0 0 unknown 1 0.500231643921954 1 0.999536712156092 hm5C_site_9359 DeepMRMD:1;iRNA_m5C:0.999536712156092 9360 chr6 28908909 28908909 1 + C G rs58800808 28908926 + 28908906 28908946 41 AGGCGTGGGTTCGAATCCCACTTCTGACACAACTATCTTAT AGGGGTGGGTTCGAATCCCACTTCTGACACAACTATCTTAT < 41bp 1 0.138936618459147 1 0.167745560407639 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908926 chr6:28908909 . . 0 4 hm5C_associated_SNPs_6570 0 0 1 0 0 unknown 1 0.50023164415877 1 0.999536711682461 hm5C_site_9360 DeepMRMD:1;iRNA_m5C:0.999536711682461 9361 chr6 28908909 28908909 1 + C G rs58800808 28908929 + 28908909 28908949 41 CGTGGGTTCGAATCCCACTTCTGACACAACTATCTTATTCT GGTGGGTTCGAATCCCACTTCTGACACAACTATCTTATTCT < 41bp 1 0.141278433485056 1 0.246714264154434 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908929 chr6:28908909 . . 0 1 hm5C_associated_SNPs_6571 0 0 1 0 0 unknown 1 0.5002316439204 1 0.9995367121592 hm5C_site_9361 DeepMRMD:1;iRNA_m5C:0.9995367121592 9362 chr6 28908928 28908928 1 + T A rs376005893 28908917 + 28908897 28908937 41 CTCCAATGGAGGCGTGGGTTCGAATCCCACTTCTGACACAA CTCCAATGGAGGCGTGGGTTCGAATCCCACTACTGACACAA < 41bp 1 0.274878027506576 1 0.224837213754654 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908917 chr6:28908928 . . 0 32 hm5C_associated_SNPs_6573 0 0 1 0 0 unknown 1 0.500231643921108 1 0.999536712157783 hm5C_site_9362 DeepMRMD:1;iRNA_m5C:0.999536712157783 9363 chr6 28908928 28908928 1 + T A rs376005893 28908922 + 28908902 28908942 41 ATGGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATC ATGGAGGCGTGGGTTCGAATCCCACTACTGACACAACTATC < 41bp 1 0.129412901218709 1 0.137565314769745 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908922 chr6:28908928 . . 0 27 hm5C_associated_SNPs_6574 0 0 1 0 0 unknown 1 0.5002316439294 1 0.9995367121412 hm5C_site_9363 DeepMRMD:1;iRNA_m5C:0.9995367121412 9364 chr6 28908928 28908928 1 + T A rs376005893 28908923 + 28908903 28908943 41 TGGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATCT TGGAGGCGTGGGTTCGAATCCCACTACTGACACAACTATCT < 41bp 1 0.114278558236969 1 0.137169122695923 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908923 chr6:28908928 . . 0 26 hm5C_associated_SNPs_6575 0 0 1 0 0 unknown 1 0.500233827928196 1 0.999532344143607 hm5C_site_9364 DeepMRMD:1;iRNA_m5C:0.999532344143607 9365 chr6 28908928 28908928 1 + T A rs376005893 28908924 + 28908904 28908944 41 GGAGGCGTGGGTTCGAATCCCACTTCTGACACAACTATCTT GGAGGCGTGGGTTCGAATCCCACTACTGACACAACTATCTT < 41bp 1 0.482786612409745 1 0.141683906316757 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908924 chr6:28908928 . . 0 25 hm5C_associated_SNPs_6576 0 0 1 0 0 unknown 1 0.500231646292547 1 0.999536707414906 hm5C_site_9365 DeepMRMD:1;iRNA_m5C:0.999536707414906 9366 chr6 28908928 28908928 1 + T A rs376005893 28908926 + 28908906 28908946 41 AGGCGTGGGTTCGAATCCCACTTCTGACACAACTATCTTAT AGGCGTGGGTTCGAATCCCACTACTGACACAACTATCTTAT < 41bp 1 0.287363567065329 1 0.261300295591354 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908926 chr6:28908928 . . 0 23 hm5C_associated_SNPs_6577 0 0 1 0 0 unknown 1 0.500231644212739 1 0.999536711574522 hm5C_site_9366 DeepMRMD:1;iRNA_m5C:0.999536711574522 9367 chr6 28908928 28908928 1 + T A rs376005893 28908929 + 28908909 28908949 41 CGTGGGTTCGAATCCCACTTCTGACACAACTATCTTATTCT CGTGGGTTCGAATCCCACTACTGACACAACTATCTTATTCT < 41bp 1 0.105977402847635 1 0.125333249568939 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908929 chr6:28908928 . . 0 20 hm5C_associated_SNPs_6578 0 0 1 0 0 unknown 1 0.500231643906358 1 0.999536712187284 hm5C_site_9367 DeepMRMD:1;iRNA_m5C:0.999536712187284 9368 chr6 28908928 28908928 1 + T A rs376005893 28908933 + 28908913 28908953 41 GGTTCGAATCCCACTTCTGACACAACTATCTTATTCTCCTT GGTTCGAATCCCACTACTGACACAACTATCTTATTCTCCTT < 41bp 1 0.565982689083897 1 0.121570348739624 experiment 0.868034621832207 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target TRIM27;LINC01556 ENSG00000204713;ENSG00000204709 intergenic Human other chr6:28908933 chr6:28908928 . . 0 16 hm5C_associated_SNPs_6579 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_9368 DeepMRMD:1;iRNA_m5C:0.999536712157818 9369 chr6 28912399 28912399 1 + C T rs140736187 28912379 + 28912359 28912399 41 TAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTC TAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTT < 41bp 1 0.168304466365856 1 0.401129573583603 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912379 chr6:28912399 . . 0 41 hm5C_associated_SNPs_6580 0 1 1 0 0 unknown 1 0.50023164392216 1 0.99953671215568 hm5C_site_9369 DeepMRMD:1;iRNA_m5C:0.99953671215568 9370 chr6 28912399 28912399 1 + C T rs140736187 28912383 + 28912363 28912403 41 GCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCCTGA GCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTTCTGA < 41bp 1 0.339458155693471 1 0.0637030303478241 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912383 chr6:28912399 . . 0 37 hm5C_associated_SNPs_6581 0 1 1 0 0 unknown 1 0.500231643920614 1 0.999536712158771 hm5C_site_9370 DeepMRMD:1;iRNA_m5C:0.999536712158771 9371 chr6 28912399 28912399 1 + C T rs140736187 28912385 + 28912365 28912405 41 AGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCCTGAGT AGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTTCTGAGT < 41bp 1 0.640820997474575 1 0.640815138816833 experiment 0.71835800505085 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912385 chr6:28912399 . . 0 35 hm5C_associated_SNPs_6582 0 1 1 0 0 unknown 1 0.50023164476881 0.718369722366334 0.99953671046238 hm5C_site_9371 DeepMRMD:0.718369722366334;iRNA_m5C:0.99953671046238 9372 chr6 28912399 28912399 1 + C T rs140736187 28912400 + 28912380 28912420 41 AGTCTCATAATCTGAAGGTCCTGAGTTCGAACCTCAGAGGG AGTCTCATAATCTGAAGGTTCTGAGTTCGAACCTCAGAGGG < 41bp 1 0.696323799542647 1 0.483280003070831 experiment 0.607352400914707 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912400 chr6:28912399 . . 0 20 hm5C_associated_SNPs_6584 0 1 1 0 0 unknown 1 0.500231643921173 1 0.999536712157654 hm5C_site_9372 DeepMRMD:1;iRNA_m5C:0.999536712157654 9373 chr6 28912399 28912399 1 + C T rs140736187 28912407 + 28912387 28912427 41 TAATCTGAAGGTCCTGAGTTCGAACCTCAGAGGGGGCAAGG TAATCTGAAGGTTCTGAGTTCGAACCTCAGAGGGGGCAAGG < 41bp 1 0.195006900748496 1 0.0853418409824371 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912407 chr6:28912399 . . 0 13 hm5C_associated_SNPs_6585 0 1 1 0 0 unknown 1 0.500231675316145 1 0.99953664936771 hm5C_site_9373 DeepMRMD:1;iRNA_m5C:0.99953664936771 9374 chr6 28912399 28912399 1 + C T rs140736187 28912411 + 28912391 28912431 41 CTGAAGGTCCTGAGTTCGAACCTCAGAGGGGGCAAGGCGTC CTGAAGGTTCTGAGTTCGAACCTCAGAGGGGGCAAGGCGTC < 41bp 1 0.246039258940604 1 0.0828206241130829 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912411 chr6:28912399 . . 0 9 hm5C_associated_SNPs_6586 0 1 1 0 0 unknown 1 0.500231643982852 1 0.999536712034297 hm5C_site_9374 DeepMRMD:1;iRNA_m5C:0.999536712034297 9375 chr6 28912399 28912399 1 + C T rs140736187 28912412 + 28912392 28912432 41 TGAAGGTCCTGAGTTCGAACCTCAGAGGGGGCAAGGCGTCT TGAAGGTTCTGAGTTCGAACCTCAGAGGGGGCAAGGCGTCT < 41bp 1 0.447157206427926 1 0.176625341176987 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912412 chr6:28912399 . . 0 8 hm5C_associated_SNPs_6587 0 1 1 0 0 unknown 1 0.50023164392109 1 0.99953671215782 hm5C_site_9375 DeepMRMD:1;iRNA_m5C:0.99953671215782 9376 chr6 28912399 28912399 1 + C T rs140736187 28912414 + 28912394 28912434 41 AAGGTCCTGAGTTCGAACCTCAGAGGGGGCAAGGCGTCTGT AAGGTTCTGAGTTCGAACCTCAGAGGGGGCAAGGCGTCTGT < 41bp 1 0.604120912938498 1 0.8383908867836 experiment 0.791758174123004 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912414 chr6:28912399 . . 0 6 hm5C_associated_SNPs_6588 0 1 1 0 0 unknown 1 0.500231653261271 0.3232182264328 0.999536693477457 hm5C_site_9376 DeepMRMD:0.3232182264328;iRNA_m5C:0.999536693477457 9377 chr6 28912405 28912405 1 + T C rs9257397 28912385 + 28912365 28912405 41 AGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCCTGAGT AGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCCTGAGC < 41bp 1 0.68885943431005 1 0.629127621650696 experiment 0.622281131379899 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912385 chr6:28912405 . . 0 41 hm5C_associated_SNPs_6589 0 0 1 0 0 unknown 1 0.500231643752112 0.741744756698608 0.999536712495776 hm5C_site_9377 DeepMRMD:0.741744756698608;iRNA_m5C:0.999536712495776 9378 chr6 28912405 28912405 1 + T C rs9257397 28912399 + 28912379 28912419 41 CAGTCTCATAATCTGAAGGTCCTGAGTTCGAACCTCAGAGG CAGTCTCATAATCTGAAGGTCCTGAGCTCGAACCTCAGAGG < 41bp 1 0.252210823096068 1 0.112692713737488 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912399 chr6:28912405 . . 0 27 hm5C_associated_SNPs_6591 0 0 1 0 0 unknown 1 0.500231643910488 1 0.999536712179024 hm5C_site_9378 DeepMRMD:1;iRNA_m5C:0.999536712179024 9379 chr6 28912405 28912405 1 + T C rs9257397 28912400 + 28912380 28912420 41 AGTCTCATAATCTGAAGGTCCTGAGTTCGAACCTCAGAGGG AGTCTCATAATCTGAAGGTCCTGAGCTCGAACCTCAGAGGG < 41bp 1 0.582913453951621 1 0.295389592647552 experiment 0.834173092096759 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912400 chr6:28912405 . . 0 26 hm5C_associated_SNPs_6592 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9379 DeepMRMD:1;iRNA_m5C:0.999536712157815 9380 chr6 28912405 28912405 1 + T C rs9257397 28912407 + 28912387 28912427 41 TAATCTGAAGGTCCTGAGTTCGAACCTCAGAGGGGGCAAGG TAATCTGAAGGTCCTGAGCTCGAACCTCAGAGGGGGCAAGG < 41bp 1 0.212196644302133 1 0.0794290602207184 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912407 chr6:28912405 . . 0 19 hm5C_associated_SNPs_6593 0 0 1 0 0 unknown 1 0.500231643920983 1 0.999536712158034 hm5C_site_9380 DeepMRMD:1;iRNA_m5C:0.999536712158034 9381 chr6 28912405 28912405 1 + T C rs9257397 28912411 + 28912391 28912431 41 CTGAAGGTCCTGAGTTCGAACCTCAGAGGGGGCAAGGCGTC CTGAAGGTCCTGAGCTCGAACCTCAGAGGGGGCAAGGCGTC < 41bp 1 0.258222799423164 1 0.245249837636948 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912411 chr6:28912405 . . 0 15 hm5C_associated_SNPs_6594 0 0 1 0 0 unknown 1 0.500231643921095 1 0.999536712157811 hm5C_site_9381 DeepMRMD:1;iRNA_m5C:0.999536712157811 9382 chr6 28912405 28912405 1 + T C rs9257397 28912412 + 28912392 28912432 41 TGAAGGTCCTGAGTTCGAACCTCAGAGGGGGCAAGGCGTCT TGAAGGTCCTGAGCTCGAACCTCAGAGGGGGCAAGGCGTCT < 41bp 1 0.450567188279729 1 0.275699585676193 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912412 chr6:28912405 . . 0 14 hm5C_associated_SNPs_6595 0 0 1 0 0 unknown 1 0.500231643920813 1 0.999536712158374 hm5C_site_9382 DeepMRMD:1;iRNA_m5C:0.999536712158374 9383 chr6 28912405 28912405 1 + T C rs9257397 28912414 + 28912394 28912434 41 AAGGTCCTGAGTTCGAACCTCAGAGGGGGCAAGGCGTCTGT AAGGTCCTGAGCTCGAACCTCAGAGGGGGCAAGGCGTCTGT < 41bp 1 0.65939672931502 1 0.862670660018921 experiment 0.68120654136996 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912414 chr6:28912405 . . 0 12 hm5C_associated_SNPs_6596 0 0 1 0 0 unknown 1 0.500231600697081 0.274658679962158 0.999536798605839 hm5C_site_9383 DeepMRMD:0.274658679962158;iRNA_m5C:0.999536798605839 9384 chr6 28912405 28912405 1 + T C rs9257397 28912423 + 28912403 28912443 41 AGTTCGAACCTCAGAGGGGGCAAGGCGTCTGTTTTGCCATT AGCTCGAACCTCAGAGGGGGCAAGGCGTCTGTTTTGCCATT < 41bp 1 0.475840486770716 1 0.438976585865021 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912423 chr6:28912405 . . 0 3 hm5C_associated_SNPs_6597 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9384 DeepMRMD:1;iRNA_m5C:0.999536712157815 9385 chr6 28912418 28912418 1 + G A rs150109832 28912399 + 28912379 28912419 41 CAGTCTCATAATCTGAAGGTCCTGAGTTCGAACCTCAGAGG CAGTCTCATAATCTGAAGGTCCTGAGTTCGAACCTCAGAAG < 41bp 1 0.317207137740798 1 0.0877713561058044 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912399 chr6:28912418 . . 0 40 hm5C_associated_SNPs_6598 0 0 1 0 0 unknown 1 0.50023151535619 1 0.999536969287619 hm5C_site_9385 DeepMRMD:1;iRNA_m5C:0.999536969287619 9386 chr6 28912418 28912418 1 + G A rs150109832 28912400 + 28912380 28912420 41 AGTCTCATAATCTGAAGGTCCTGAGTTCGAACCTCAGAGGG AGTCTCATAATCTGAAGGTCCTGAGTTCGAACCTCAGAAGG < 41bp 1 0.604284438927009 1 0.324364721775055 experiment 0.791431122145982 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912400 chr6:28912418 . . 0 39 hm5C_associated_SNPs_6599 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9386 DeepMRMD:1;iRNA_m5C:0.999536712157815 9387 chr6 28912418 28912418 1 + G A rs150109832 28912407 + 28912387 28912427 41 TAATCTGAAGGTCCTGAGTTCGAACCTCAGAGGGGGCAAGG TAATCTGAAGGTCCTGAGTTCGAACCTCAGAAGGGGCAAGG < 41bp 1 0.197687119644251 1 0.138507276773453 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912407 chr6:28912418 . . 0 32 hm5C_associated_SNPs_6600 0 0 1 0 0 unknown 1 0.500231644149059 1 0.999536711701882 hm5C_site_9387 DeepMRMD:1;iRNA_m5C:0.999536711701882 9388 chr6 28912418 28912418 1 + G A rs150109832 28912411 + 28912391 28912431 41 CTGAAGGTCCTGAGTTCGAACCTCAGAGGGGGCAAGGCGTC CTGAAGGTCCTGAGTTCGAACCTCAGAAGGGGCAAGGCGTC < 41bp 1 0.220541186890246 1 0.114237934350967 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912411 chr6:28912418 . . 0 28 hm5C_associated_SNPs_6601 0 0 1 0 0 unknown 1 0.500231644004426 1 0.999536711991147 hm5C_site_9388 DeepMRMD:1;iRNA_m5C:0.999536711991147 9389 chr6 28912418 28912418 1 + G A rs150109832 28912412 + 28912392 28912432 41 TGAAGGTCCTGAGTTCGAACCTCAGAGGGGGCAAGGCGTCT TGAAGGTCCTGAGTTCGAACCTCAGAAGGGGCAAGGCGTCT < 41bp 1 0.4300328751986 1 0.115544140338898 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912412 chr6:28912418 . . 0 27 hm5C_associated_SNPs_6602 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9389 DeepMRMD:1;iRNA_m5C:0.999536712157815 9390 chr6 28912418 28912418 1 + G A rs150109832 28912423 + 28912403 28912443 41 AGTTCGAACCTCAGAGGGGGCAAGGCGTCTGTTTTGCCATT AGTTCGAACCTCAGAAGGGGCAAGGCGTCTGTTTTGCCATT < 41bp 1 0.500577530472775 1 0.297457873821259 experiment 0.99884493905445 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556 ENSG00000204709 downstream Human lincRNA chr6:28912423 chr6:28912418 . . 0 16 hm5C_associated_SNPs_6604 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9390 DeepMRMD:1;iRNA_m5C:0.999536712157815 9391 chr6 28918809 28918809 1 + C A rs182035589 28918807 + 28918787 28918827 41 AAGAAGGCTTTTGCAGGGAGCCCGGATAGCTCAGTCGGTAG AAGAAGGCTTTTGCAGGGAGCCAGGATAGCTCAGTCGGTAG < 41bp 1 0.473799621888823 1 0.771196484565735 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918807 chr6:28918809 . . 0 23 hm5C_associated_SNPs_6605 0 0 1 0 0 unknown 1 0.50023042951349 0.45760703086853 0.999539140973021 hm5C_site_9391 DeepMRMD:0.45760703086853;iRNA_m5C:0.999539140973021 9392 chr6 28918809 28918809 1 + C A rs182035589 28918816 + 28918796 28918836 41 TTTGCAGGGAGCCCGGATAGCTCAGTCGGTAGAGCATCAGA TTTGCAGGGAGCCAGGATAGCTCAGTCGGTAGAGCATCAGA < 41bp 1 0.626119405723379 1 0.133938491344452 experiment 0.747761188553243 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918816 chr6:28918809 . . 0 14 hm5C_associated_SNPs_6606 0 0 1 0 0 unknown 1 0.500231644972859 1 0.999536710054282 hm5C_site_9392 DeepMRMD:1;iRNA_m5C:0.999536710054282 9393 chr6 28918809 28918809 1 + C A rs182035589 28918822 + 28918802 28918842 41 GGGAGCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTA GGGAGCCAGGATAGCTCAGTCGGTAGAGCATCAGACTTTTA < 41bp 1 0.642159591183851 1 0.287237703800201 experiment 0.715680817632297 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918822 chr6:28918809 . . 0 8 hm5C_associated_SNPs_6607 0 0 1 0 0 unknown 1 0.500231643921085 1 0.99953671215783 hm5C_site_9393 DeepMRMD:1;iRNA_m5C:0.99953671215783 9394 chr6 28918830 28918830 1 + C T rs376954407 28918816 + 28918796 28918836 41 TTTGCAGGGAGCCCGGATAGCTCAGTCGGTAGAGCATCAGA TTTGCAGGGAGCCCGGATAGCTCAGTCGGTAGAGTATCAGA < 41bp 1 0.654933463349464 1 0.163043588399887 experiment 0.690133073301072 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918816 chr6:28918830 . . 0 35 hm5C_associated_SNPs_6608 0 0 1 0 0 unknown 1 0.500231643921095 1 0.99953671215781 hm5C_site_9394 DeepMRMD:1;iRNA_m5C:0.99953671215781 9395 chr6 28918830 28918830 1 + C T rs376954407 28918822 + 28918802 28918842 41 GGGAGCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTA GGGAGCCCGGATAGCTCAGTCGGTAGAGTATCAGACTTTTA < 41bp 1 0.592777818108538 1 0.400929510593414 experiment 0.814444363782924 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918822 chr6:28918830 . . 0 29 hm5C_associated_SNPs_6609 0 0 1 0 0 unknown 1 0.500231643919294 1 0.999536712161411 hm5C_site_9395 DeepMRMD:1;iRNA_m5C:0.999536712161411 9396 chr6 28918830 28918830 1 + C T rs376954407 28918833 + 28918813 28918853 41 TAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTC TAGCTCAGTCGGTAGAGTATCAGACTTTTAATCTGAGGGTC < 41bp 1 0.450780226614388 1 0.421793311834335 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918833 chr6:28918830 . . 0 18 hm5C_associated_SNPs_6610 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9396 DeepMRMD:1;iRNA_m5C:0.999536712157815 9397 chr6 28918830 28918830 1 + C T rs376954407 28918837 + 28918817 28918857 41 TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCCAGG TCAGTCGGTAGAGTATCAGACTTTTAATCTGAGGGTCCAGG < 41bp 1 0.0345378424666912 1 0.00566989183425903 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918837 chr6:28918830 . . 0 14 hm5C_associated_SNPs_6611 0 0 1 0 0 unknown 1 0.500231643921041 1 0.999536712157919 hm5C_site_9397 DeepMRMD:1;iRNA_m5C:0.999536712157919 9398 chr6 28918830 28918830 1 + C T rs376954407 28918845 + 28918825 28918865 41 TAGAGCATCAGACTTTTAATCTGAGGGTCCAGGGTTCAAGT TAGAGTATCAGACTTTTAATCTGAGGGTCCAGGGTTCAAGT < 41bp 1 0.607637447998478 1 0.792043566703796 experiment 0.784725104003043 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918845 chr6:28918830 . . 0 6 hm5C_associated_SNPs_6612 0 0 1 0 0 unknown 1 0.500231643921091 0.415912866592408 0.999536712157817 hm5C_site_9398 DeepMRMD:0.415912866592408;iRNA_m5C:0.999536712157817 9399 chr6 28918831 28918831 1 + A C rs181736432 28918822 + 28918802 28918842 41 GGGAGCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTA GGGAGCCCGGATAGCTCAGTCGGTAGAGCCTCAGACTTTTA < 41bp 1 0.624514072260281 1 0.53395414352417 experiment 0.750971855479438 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918822 chr6:28918831 . . 0 30 hm5C_associated_SNPs_6614 0 0 1 0 0 unknown 1 0.500232058669828 0.93209171295166 0.999535882660344 hm5C_site_9399 DeepMRMD:0.93209171295166;iRNA_m5C:0.999535882660344 9400 chr6 28918831 28918831 1 + A C rs181736432 28918830 + 28918810 28918850 41 GGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG GGATAGCTCAGTCGGTAGAGCCTCAGACTTTTAATCTGAGG < 41bp 1 0.18429841484611 1 0.0677320063114166 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918830 chr6:28918831 . . 0 22 hm5C_associated_SNPs_6615 0 0 1 0 0 unknown 1 0.500231642958009 1 0.999536714083981 hm5C_site_9400 DeepMRMD:1;iRNA_m5C:0.999536714083981 9401 chr6 28918831 28918831 1 + A C rs181736432 28918833 + 28918813 28918853 41 TAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTC TAGCTCAGTCGGTAGAGCCTCAGACTTTTAATCTGAGGGTC < 41bp 1 0.348123158053922 1 0.590314388275146 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918833 chr6:28918831 . . 0 19 hm5C_associated_SNPs_6616 0 0 1 0 0 unknown 1 0.500231643921092 0.819371223449708 0.999536712157815 hm5C_site_9401 DeepMRMD:0.819371223449708;iRNA_m5C:0.999536712157815 9402 chr6 28918831 28918831 1 + A C rs181736432 28918837 + 28918817 28918857 41 TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCCAGG TCAGTCGGTAGAGCCTCAGACTTTTAATCTGAGGGTCCAGG < 41bp 1 0.0379876761123864 1 0.00775590538978577 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918837 chr6:28918831 . . 0 15 hm5C_associated_SNPs_6617 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9402 DeepMRMD:1;iRNA_m5C:0.999536712157815 9403 chr6 28918831 28918831 1 + A C rs181736432 28918845 + 28918825 28918865 41 TAGAGCATCAGACTTTTAATCTGAGGGTCCAGGGTTCAAGT TAGAGCCTCAGACTTTTAATCTGAGGGTCCAGGGTTCAAGT < 41bp 1 0.565892416063669 1 0.836913824081421 experiment 0.868215167872663 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918845 chr6:28918831 . . 0 7 hm5C_associated_SNPs_6618 0 0 1 0 0 unknown 1 0.500231643921092 0.326172351837158 0.999536712157815 hm5C_site_9403 DeepMRMD:0.326172351837158;iRNA_m5C:0.999536712157815 9404 chr6 28918838 28918838 1 + T A rs149655948 28918822 + 28918802 28918842 41 GGGAGCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTA GGGAGCCCGGATAGCTCAGTCGGTAGAGCATCAGACATTTA < 41bp 1 0.616812129048215 1 0.268179476261139 experiment 0.76637574190357 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918822 chr6:28918838 . . 0 37 hm5C_associated_SNPs_6619 0 0 1 0 0 unknown 1 0.500231644499989 1 0.999536711000021 hm5C_site_9404 DeepMRMD:1;iRNA_m5C:0.999536711000021 9405 chr6 28918838 28918838 1 + T A rs149655948 28918830 + 28918810 28918850 41 GGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG GGATAGCTCAGTCGGTAGAGCATCAGACATTTAATCTGAGG < 41bp 1 0.404276613271992 1 0.113975673913956 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918830 chr6:28918838 . . 0 29 hm5C_associated_SNPs_6620 0 0 1 0 0 unknown 1 0.500231652307766 1 0.999536695384468 hm5C_site_9405 DeepMRMD:1;iRNA_m5C:0.999536695384468 9406 chr6 28918838 28918838 1 + T A rs149655948 28918833 + 28918813 28918853 41 TAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTC TAGCTCAGTCGGTAGAGCATCAGACATTTAATCTGAGGGTC < 41bp 1 0.347702303681388 1 0.471276074647903 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918833 chr6:28918838 . . 0 26 hm5C_associated_SNPs_6621 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9406 DeepMRMD:1;iRNA_m5C:0.999536712157815 9407 chr6 28918838 28918838 1 + T A rs149655948 28918837 + 28918817 28918857 41 TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCCAGG TCAGTCGGTAGAGCATCAGACATTTAATCTGAGGGTCCAGG < 41bp 1 0.0438599563926972 1 0.01036137342453 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918837 chr6:28918838 . . 0 22 hm5C_associated_SNPs_6622 0 0 1 0 0 unknown 1 0.5002316439211 1 0.999536712157799 hm5C_site_9407 DeepMRMD:1;iRNA_m5C:0.999536712157799 9408 chr6 28918838 28918838 1 + T A rs149655948 28918845 + 28918825 28918865 41 TAGAGCATCAGACTTTTAATCTGAGGGTCCAGGGTTCAAGT TAGAGCATCAGACATTTAATCTGAGGGTCCAGGGTTCAAGT < 41bp 1 0.610945159126896 1 0.727180063724518 experiment 0.778109681746208 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918845 chr6:28918838 . . 0 14 hm5C_associated_SNPs_6623 0 0 1 0 0 unknown 1 0.500231643779423 0.545639872550964 0.999536712441154 hm5C_site_9408 DeepMRMD:0.545639872550964;iRNA_m5C:0.999536712441154 9409 chr6 28918838 28918838 1 + T A rs149655948 28918853 + 28918833 28918873 41 CAGACTTTTAATCTGAGGGTCCAGGGTTCAAGTCCCTGTTC CAGACATTTAATCTGAGGGTCCAGGGTTCAAGTCCCTGTTC < 41bp 1 0.399009650797273 1 0.4949971139431 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918853 chr6:28918838 . . 0 6 hm5C_associated_SNPs_6624 0 0 1 0 0 unknown 1 0.500231643896126 1 0.999536712207748 hm5C_site_9409 DeepMRMD:1;iRNA_m5C:0.999536712207748 9410 chr6 28918844 28918844 1 + T C rs147350039 28918830 + 28918810 28918850 41 GGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG GGATAGCTCAGTCGGTAGAGCATCAGACTTTTAACCTGAGG < 41bp 1 0.398385516381408 1 0.106184184551239 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918830 chr6:28918844 . . 0 35 hm5C_associated_SNPs_6626 0 0 1 0 0 unknown 1 0.500231659200655 1 0.99953668159869 hm5C_site_9410 DeepMRMD:1;iRNA_m5C:0.99953668159869 9411 chr6 28918844 28918844 1 + T C rs147350039 28918833 + 28918813 28918853 41 TAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTC TAGCTCAGTCGGTAGAGCATCAGACTTTTAACCTGAGGGTC < 41bp 1 0.343587148410341 1 0.560106575489044 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918833 chr6:28918844 . . 0 32 hm5C_associated_SNPs_6627 0 0 1 0 0 unknown 1 0.500231643921092 0.879786849021912 0.999536712157815 hm5C_site_9411 DeepMRMD:0.879786849021912;iRNA_m5C:0.999536712157815 9412 chr6 28918844 28918844 1 + T C rs147350039 28918837 + 28918817 28918857 41 TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCCAGG TCAGTCGGTAGAGCATCAGACTTTTAACCTGAGGGTCCAGG < 41bp 1 0.0400254570612038 1 0.00829076766967773 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918837 chr6:28918844 . . 0 28 hm5C_associated_SNPs_6628 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9412 DeepMRMD:1;iRNA_m5C:0.999536712157815 9413 chr6 28918844 28918844 1 + T C rs147350039 28918845 + 28918825 28918865 41 TAGAGCATCAGACTTTTAATCTGAGGGTCCAGGGTTCAAGT TAGAGCATCAGACTTTTAACCTGAGGGTCCAGGGTTCAAGT < 41bp 1 0.57727611122593 1 0.758350253105164 experiment 0.84544777754814 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918845 chr6:28918844 . . 0 20 hm5C_associated_SNPs_6629 0 0 1 0 0 unknown 1 0.500231643786937 0.483299493789672 0.999536712426126 hm5C_site_9413 DeepMRMD:0.483299493789672;iRNA_m5C:0.999536712426126 9414 chr6 28918844 28918844 1 + T C rs147350039 28918853 + 28918833 28918873 41 CAGACTTTTAATCTGAGGGTCCAGGGTTCAAGTCCCTGTTC CAGACTTTTAACCTGAGGGTCCAGGGTTCAAGTCCCTGTTC < 41bp 1 0.415023901037167 1 0.423372685909271 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918853 chr6:28918844 . . 0 12 hm5C_associated_SNPs_6630 0 0 1 0 0 unknown 1 0.500231643681049 1 0.999536712637902 hm5C_site_9414 DeepMRMD:1;iRNA_m5C:0.999536712637902 9415 chr6 28918850 28918850 1 + G A rs534455894 28918830 + 28918810 28918850 41 GGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG GGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGA < 41bp 1 0.391750923192867 1 0.0730721056461334 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918830 chr6:28918850 . . 0 41 hm5C_associated_SNPs_6632 0 0 1 0 0 unknown 1 0.500232574095525 1 0.999534851808951 hm5C_site_9415 DeepMRMD:1;iRNA_m5C:0.999534851808951 9416 chr6 28918850 28918850 1 + G A rs534455894 28918833 + 28918813 28918853 41 TAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTC TAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGAGTC < 41bp 1 0.354920394209304 1 0.480688601732254 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918833 chr6:28918850 . . 0 38 hm5C_associated_SNPs_6633 0 0 1 0 0 unknown 1 0.5002316439211 1 0.999536712157799 hm5C_site_9416 DeepMRMD:1;iRNA_m5C:0.999536712157799 9417 chr6 28918850 28918850 1 + G A rs534455894 28918837 + 28918817 28918857 41 TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCCAGG TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGAGTCCAGG < 41bp 1 0.0329940280068187 1 0.00919029116630554 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918837 chr6:28918850 . . 0 34 hm5C_associated_SNPs_6634 0 0 1 0 0 unknown 1 0.50023164392151 1 0.999536712156981 hm5C_site_9417 DeepMRMD:1;iRNA_m5C:0.999536712156981 9418 chr6 28918850 28918850 1 + G A rs534455894 28918845 + 28918825 28918865 41 TAGAGCATCAGACTTTTAATCTGAGGGTCCAGGGTTCAAGT TAGAGCATCAGACTTTTAATCTGAGAGTCCAGGGTTCAAGT < 41bp 1 0.55373905395824 1 0.657810032367706 experiment 0.89252189208352 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918845 chr6:28918850 . . 0 26 hm5C_associated_SNPs_6635 0 0 1 0 0 unknown 1 0.500231644114153 0.684379935264588 0.999536711771695 hm5C_site_9418 DeepMRMD:0.684379935264588;iRNA_m5C:0.999536711771695 9419 chr6 28918850 28918850 1 + G A rs534455894 28918853 + 28918833 28918873 41 CAGACTTTTAATCTGAGGGTCCAGGGTTCAAGTCCCTGTTC CAGACTTTTAATCTGAGAGTCCAGGGTTCAAGTCCCTGTTC < 41bp 1 0.446531370928787 1 0.42462494969368 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918853 chr6:28918850 . . 0 18 hm5C_associated_SNPs_6636 0 0 1 0 0 unknown 1 0.500231642640403 1 0.999536714719194 hm5C_site_9419 DeepMRMD:1;iRNA_m5C:0.999536714719194 9420 chr6 28918850 28918850 1 + G A rs534455894 28918867 + 28918847 28918887 41 GAGGGTCCAGGGTTCAAGTCCCTGTTCGGGCGGGAGTGGTG GAGAGTCCAGGGTTCAAGTCCCTGTTCGGGCGGGAGTGGTG < 41bp 1 0.0835321250326398 1 0.0556141436100006 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918867 chr6:28918850 . . 0 4 hm5C_associated_SNPs_6638 0 0 1 0 0 unknown 1 0.500231795624813 1 0.999536408750375 hm5C_site_9420 DeepMRMD:1;iRNA_m5C:0.999536408750375 9421 chr6 28918850 28918850 1 + G A rs534455894 28918868 + 28918848 28918888 41 AGGGTCCAGGGTTCAAGTCCCTGTTCGGGCGGGAGTGGTGG AGAGTCCAGGGTTCAAGTCCCTGTTCGGGCGGGAGTGGTGG < 41bp 1 0.158727520796128 1 0.0420934557914734 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918868 chr6:28918850 . . 0 3 hm5C_associated_SNPs_6639 0 0 1 0 0 unknown 1 0.500231643921096 1 0.999536712157807 hm5C_site_9421 DeepMRMD:1;iRNA_m5C:0.999536712157807 9422 chr6 28918854 28918854 1 + C A rs115194890 28918837 + 28918817 28918857 41 TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCCAGG TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCAAGG < 41bp 1 0.033553714865453 1 0.0104500949382782 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918837 chr6:28918854 . . 0 38 hm5C_associated_SNPs_6640 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_9422 DeepMRMD:1;iRNA_m5C:0.999536712157816 9423 chr6 28918854 28918854 1 + C A rs115194890 28918845 + 28918825 28918865 41 TAGAGCATCAGACTTTTAATCTGAGGGTCCAGGGTTCAAGT TAGAGCATCAGACTTTTAATCTGAGGGTCAAGGGTTCAAGT < 41bp 1 0.605488463229187 1 0.779318571090698 experiment 0.789023073541626 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918845 chr6:28918854 . . 0 30 hm5C_associated_SNPs_6641 0 0 1 0 0 unknown 1 0.500231643921063 0.441362857818604 0.999536712157874 hm5C_site_9423 DeepMRMD:0.441362857818604;iRNA_m5C:0.999536712157874 Plasma parathyroid hormone levels 9424 chr6 28918854 28918854 1 + C A rs115194890 28918853 + 28918833 28918873 41 CAGACTTTTAATCTGAGGGTCCAGGGTTCAAGTCCCTGTTC CAGACTTTTAATCTGAGGGTCAAGGGTTCAAGTCCCTGTTC < 41bp 1 0.636654864844602 1 0.722925424575806 experiment 0.726690270310796 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918853 chr6:28918854 . . 0 22 hm5C_associated_SNPs_6642 0 0 1 0 0 unknown 1 0.500231643921088 0.554149150848388 0.999536712157824 hm5C_site_9424 DeepMRMD:0.554149150848388;iRNA_m5C:0.999536712157824 9425 chr6 28918854 28918854 1 + C A rs115194890 28918867 + 28918847 28918887 41 GAGGGTCCAGGGTTCAAGTCCCTGTTCGGGCGGGAGTGGTG GAGGGTCAAGGGTTCAAGTCCCTGTTCGGGCGGGAGTGGTG < 41bp 1 0.0969677155345137 1 0.0453467667102814 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918867 chr6:28918854 . . 0 8 hm5C_associated_SNPs_6643 0 0 1 0 0 unknown 1 0.500231644609944 1 0.999536710780112 hm5C_site_9425 DeepMRMD:1;iRNA_m5C:0.999536710780112 9426 chr6 28918854 28918854 1 + C A rs115194890 28918868 + 28918848 28918888 41 AGGGTCCAGGGTTCAAGTCCCTGTTCGGGCGGGAGTGGTGG AGGGTCAAGGGTTCAAGTCCCTGTTCGGGCGGGAGTGGTGG < 41bp 1 0.194281932741326 1 0.0255004465579987 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000204709;ENSG00000228666 intergenic Human other chr6:28918868 chr6:28918854 . . 0 7 hm5C_associated_SNPs_6644 0 0 1 0 0 unknown 1 0.5002316439209 1 0.999536712158199 hm5C_site_9426 DeepMRMD:1;iRNA_m5C:0.999536712158199 9427 chr6 28950003 28950003 1 + G A rs555017830 28949987 + 28949967 28950007 41 ACTTCAGCTTCCCTGGTGGTCTAGTGGTTAGGATTCGGCGC ACTTCAGCTTCCCTGGTGGTCTAGTGGTTAGGATTCAGCGC < 41bp 1 0.616480564636627 1 0.731004953384399 experiment 0.767038870726745 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28949987 chr6:28950003 . . 0 37 hm5C_associated_SNPs_6645 0 0 1 0 0 unknown 1 0.50023168521016 0.537990093231202 0.999536629579681 hm5C_site_9427 DeepMRMD:0.537990093231202;iRNA_m5C:0.999536629579681 9428 chr6 28950003 28950003 1 + G A rs555017830 28950005 + 28949985 28950025 41 GTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCG GTCTAGTGGTTAGGATTCAGCGCTCTCACCGCCGCGGCCCG < 41bp 1 0.3536398509135 1 0.549915671348572 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950005 chr6:28950003 . . 0 19 hm5C_associated_SNPs_6646 0 0 1 0 0 unknown 1 0.500231819153603 0.900168657302856 0.999536361692794 hm5C_site_9428 DeepMRMD:0.900168657302856;iRNA_m5C:0.999536361692794 9429 chr6 28950003 28950003 1 + G A rs555017830 28950007 + 28949987 28950027 41 CTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGG CTAGTGGTTAGGATTCAGCGCTCTCACCGCCGCGGCCCGGG < 41bp 1 0.10313844253739 1 0.0965283811092377 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950007 chr6:28950003 . . 0 17 hm5C_associated_SNPs_6647 0 0 1 0 0 unknown 1 0.500231653536096 1 0.999536692927808 hm5C_site_9429 DeepMRMD:1;iRNA_m5C:0.999536692927808 9430 chr6 28950003 28950003 1 + G A rs555017830 28950009 + 28949989 28950029 41 AGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTT AGTGGTTAGGATTCAGCGCTCTCACCGCCGCGGCCCGGGTT < 41bp 1 0.295940591793183 1 0.085527628660202 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950009 chr6:28950003 . . 0 15 hm5C_associated_SNPs_6648 0 0 1 0 0 unknown 1 0.500231644523281 1 0.999536710953438 hm5C_site_9430 DeepMRMD:1;iRNA_m5C:0.999536710953438 9431 chr6 28950003 28950003 1 + G A rs555017830 28950011 + 28949991 28950031 41 TGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCG TGGTTAGGATTCAGCGCTCTCACCGCCGCGGCCCGGGTTCG < 41bp 1 0.679827262651793 1 0.312942922115326 experiment 0.640345474696414 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950011 chr6:28950003 . . 0 13 hm5C_associated_SNPs_6649 0 0 1 0 0 unknown 1 0.500231665717293 1 0.999536668565414 hm5C_site_9431 DeepMRMD:1;iRNA_m5C:0.999536668565414 9432 chr6 28950003 28950003 1 + G A rs555017830 28950013 + 28949993 28950033 41 GTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGAT GTTAGGATTCAGCGCTCTCACCGCCGCGGCCCGGGTTCGAT < 41bp 1 0.391558192886766 1 0.409921765327454 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950013 chr6:28950003 . . 0 11 hm5C_associated_SNPs_6650 0 0 1 0 0 unknown 1 0.500231650076818 1 0.999536699846363 hm5C_site_9432 DeepMRMD:1;iRNA_m5C:0.999536699846363 9433 chr6 28950003 28950003 1 + G A rs555017830 28950014 + 28949994 28950034 41 TTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATT TTAGGATTCAGCGCTCTCACCGCCGCGGCCCGGGTTCGATT < 41bp 1 0.574402806709271 1 0.882621228694916 experiment 0.851194386581459 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950014 chr6:28950003 . . 0 10 hm5C_associated_SNPs_6651 0 0 1 0 0 unknown 1 0.500231032188704 0.234757542610168 0.999537935622592 hm5C_site_9433 DeepMRMD:0.234757542610168;iRNA_m5C:0.999537935622592 9434 chr6 28950003 28950003 1 + G A rs555017830 28950016 + 28949996 28950036 41 AGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCC AGGATTCAGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCC < 41bp 1 0.395021973946233 1 0.787165105342865 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950016 chr6:28950003 . . 0 8 hm5C_associated_SNPs_6652 0 0 1 0 0 unknown 1 0.500231651761816 0.42566978931427 0.999536696476368 hm5C_site_9434 DeepMRMD:0.42566978931427;iRNA_m5C:0.999536696476368 9435 chr6 28950003 28950003 1 + G A rs555017830 28950019 + 28949999 28950039 41 ATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGG ATTCAGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGG < 41bp 1 0.348044167367997 1 0.554947435855865 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950019 chr6:28950003 . . 0 5 hm5C_associated_SNPs_6654 0 0 1 0 0 unknown 1 0.500231643921104 0.89010512828827 0.999536712157792 hm5C_site_9435 DeepMRMD:0.89010512828827;iRNA_m5C:0.999536712157792 9436 chr6 28950003 28950003 1 + G A rs555017830 28950022 + 28950002 28950042 41 CGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCA CAGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCA < 41bp 1 0.612642513581669 1 0.239868372678757 experiment 0.774714972836662 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950022 chr6:28950003 . . 0 2 hm5C_associated_SNPs_6655 0 0 1 0 0 unknown 1 0.500231644063244 1 0.999536711873512 hm5C_site_9436 DeepMRMD:1;iRNA_m5C:0.999536711873512 9437 chr6 28950003 28950003 1 + G A rs555017830 28950023 + 28950003 28950043 41 GGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAG AGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAG < 41bp 1 0.690092294655685 1 0.302719175815582 experiment 0.619815410688631 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950023 chr6:28950003 . . 0 1 hm5C_associated_SNPs_6656 0 0 1 0 0 unknown 1 0.500231643921042 1 0.999536712157916 hm5C_site_9437 DeepMRMD:1;iRNA_m5C:0.999536712157916 9438 chr6 28950013 28950013 1 + C A rs57071012 28950005 + 28949985 28950025 41 GTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCG GTCTAGTGGTTAGGATTCGGCGCTCTCAACGCCGCGGCCCG < 41bp 1 0.290637352158669 1 0.402442514896393 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950005 chr6:28950013 . . 0 29 hm5C_associated_SNPs_6657 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9438 DeepMRMD:1;iRNA_m5C:0.999536712157815 9439 chr6 28950013 28950013 1 + C A rs57071012 28950007 + 28949987 28950027 41 CTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGG CTAGTGGTTAGGATTCGGCGCTCTCAACGCCGCGGCCCGGG < 41bp 1 0.0980379200945737 1 0.216034203767776 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950007 chr6:28950013 . . 0 27 hm5C_associated_SNPs_6658 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9439 DeepMRMD:1;iRNA_m5C:0.999536712157815 9440 chr6 28950013 28950013 1 + C A rs57071012 28950014 + 28949994 28950034 41 TTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATT TTAGGATTCGGCGCTCTCAACGCCGCGGCCCGGGTTCGATT < 41bp 1 0.630942973957036 1 0.852275609970093 experiment 0.738114052085928 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950014 chr6:28950013 . . 0 20 hm5C_associated_SNPs_6661 0 0 1 0 0 unknown 1 0.500231644105677 0.295448780059814 0.999536711788646 hm5C_site_9440 DeepMRMD:0.295448780059814;iRNA_m5C:0.999536711788646 9441 chr6 28950013 28950013 1 + C A rs57071012 28950016 + 28949996 28950036 41 AGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCC AGGATTCGGCGCTCTCAACGCCGCGGCCCGGGTTCGATTCC < 41bp 1 0.519234808492548 1 0.770686745643616 experiment 0.961530383014903 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950016 chr6:28950013 . . 0 18 hm5C_associated_SNPs_6662 0 0 1 0 0 unknown 1 0.500231643921094 0.458626508712768 0.999536712157812 hm5C_site_9441 DeepMRMD:0.458626508712768;iRNA_m5C:0.999536712157812 9442 chr6 28950013 28950013 1 + C A rs57071012 28950019 + 28949999 28950039 41 ATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGG ATTCGGCGCTCTCAACGCCGCGGCCCGGGTTCGATTCCCGG < 41bp 1 0.344702604323549 1 0.422691702842712 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950019 chr6:28950013 . . 0 15 hm5C_associated_SNPs_6664 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157811 hm5C_site_9442 DeepMRMD:1;iRNA_m5C:0.999536712157811 9443 chr6 28950013 28950013 1 + C A rs57071012 28950022 + 28950002 28950042 41 CGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCA CGGCGCTCTCAACGCCGCGGCCCGGGTTCGATTCCCGGTCA < 41bp 1 0.607308060197017 1 0.190762162208557 experiment 0.785383879605966 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950022 chr6:28950013 . . 0 12 hm5C_associated_SNPs_6665 0 0 1 0 0 unknown 1 0.500231643921059 1 0.999536712157883 hm5C_site_9443 DeepMRMD:1;iRNA_m5C:0.999536712157883 9444 chr6 28950013 28950013 1 + C A rs57071012 28950024 + 28950004 28950044 41 GCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGG GCGCTCTCAACGCCGCGGCCCGGGTTCGATTCCCGGTCAGG < 41bp 1 0.481340258491684 1 0.432999670505524 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950024 chr6:28950013 . . 0 10 hm5C_associated_SNPs_6667 0 0 1 0 0 unknown 1 0.500231643921122 1 0.999536712157756 hm5C_site_9444 DeepMRMD:1;iRNA_m5C:0.999536712157756 9445 chr6 28950013 28950013 1 + C A rs57071012 28950030 + 28950010 28950050 41 TCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGA TCAACGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGA < 41bp 1 0.177208564886668 1 0.0701130032539368 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950030 chr6:28950013 . . 0 4 hm5C_associated_SNPs_6668 0 0 1 0 0 unknown 1 0.500231643562209 1 0.999536712875581 hm5C_site_9445 DeepMRMD:1;iRNA_m5C:0.999536712875581 9446 chr6 28950014 28950014 1 + C A rs546018964 28950005 + 28949985 28950025 41 GTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCG GTCTAGTGGTTAGGATTCGGCGCTCTCACAGCCGCGGCCCG < 41bp 1 0.277599175366575 1 0.360921710729599 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950005 chr6:28950014 . . 0 30 hm5C_associated_SNPs_6669 0 0 1 0 0 unknown 1 0.500231643919208 1 0.999536712161585 hm5C_site_9446 DeepMRMD:1;iRNA_m5C:0.999536712161585 9447 chr6 28950014 28950014 1 + C A rs546018964 28950007 + 28949987 28950027 41 CTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGG CTAGTGGTTAGGATTCGGCGCTCTCACAGCCGCGGCCCGGG < 41bp 1 0.0857799488941064 1 0.12676990032196 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950007 chr6:28950014 . . 0 28 hm5C_associated_SNPs_6670 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9447 DeepMRMD:1;iRNA_m5C:0.999536712157815 9448 chr6 28950014 28950014 1 + C A rs546018964 28950009 + 28949989 28950029 41 AGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTT AGTGGTTAGGATTCGGCGCTCTCACAGCCGCGGCCCGGGTT < 41bp 1 0.333733135192175 1 0.265030324459076 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950009 chr6:28950014 . . 0 26 hm5C_associated_SNPs_6671 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9448 DeepMRMD:1;iRNA_m5C:0.999536712157815 9449 chr6 28950014 28950014 1 + C A rs546018964 28950013 + 28949993 28950033 41 GTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGAT GTTAGGATTCGGCGCTCTCACAGCCGCGGCCCGGGTTCGAT < 41bp 1 0.674346872157821 1 0.770263075828552 experiment 0.651306255684359 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950013 chr6:28950014 . . 0 22 hm5C_associated_SNPs_6673 0 0 1 0 0 unknown 1 0.500231643921092 0.459473848342896 0.999536712157815 hm5C_site_9449 DeepMRMD:0.459473848342896;iRNA_m5C:0.999536712157815 9450 chr6 28950014 28950014 1 + C A rs546018964 28950016 + 28949996 28950036 41 AGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCC AGGATTCGGCGCTCTCACAGCCGCGGCCCGGGTTCGATTCC < 41bp 1 0.447677942723986 1 0.754593849182129 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950016 chr6:28950014 . . 0 19 hm5C_associated_SNPs_6674 0 0 1 0 0 unknown 1 0.500230311654047 0.490812301635742 0.999539376691906 hm5C_site_9450 DeepMRMD:0.490812301635742;iRNA_m5C:0.999539376691906 9451 chr6 28950014 28950014 1 + C A rs546018964 28950019 + 28949999 28950039 41 ATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGG ATTCGGCGCTCTCACAGCCGCGGCCCGGGTTCGATTCCCGG < 41bp 1 0.380117182002046 1 0.256746232509613 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950019 chr6:28950014 . . 0 16 hm5C_associated_SNPs_6676 0 0 1 0 0 unknown 1 0.500231643921114 1 0.999536712157772 hm5C_site_9451 DeepMRMD:1;iRNA_m5C:0.999536712157772 9452 chr6 28950014 28950014 1 + C A rs546018964 28950022 + 28950002 28950042 41 CGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCA CGGCGCTCTCACAGCCGCGGCCCGGGTTCGATTCCCGGTCA < 41bp 1 0.59485558970835 1 0.41501396894455 experiment 0.810288820583299 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950022 chr6:28950014 . . 0 13 hm5C_associated_SNPs_6677 0 0 1 0 0 unknown 1 0.500231643863009 1 0.999536712273982 hm5C_site_9452 DeepMRMD:1;iRNA_m5C:0.999536712273982 9453 chr6 28950014 28950014 1 + C A rs546018964 28950023 + 28950003 28950043 41 GGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAG GGCGCTCTCACAGCCGCGGCCCGGGTTCGATTCCCGGTCAG < 41bp 1 0.676305341662396 1 0.401311904191971 experiment 0.647389316675207 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950023 chr6:28950014 . . 0 12 hm5C_associated_SNPs_6678 0 0 1 0 0 unknown 1 0.500231643970441 1 0.999536712059118 hm5C_site_9453 DeepMRMD:1;iRNA_m5C:0.999536712059118 9454 chr6 28950014 28950014 1 + C A rs546018964 28950024 + 28950004 28950044 41 GCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGG GCGCTCTCACAGCCGCGGCCCGGGTTCGATTCCCGGTCAGG < 41bp 1 0.506696265395926 1 0.586596369743347 experiment 0.986607469208148 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950024 chr6:28950014 . . 0 11 hm5C_associated_SNPs_6679 0 0 1 0 0 unknown 1 0.500231643921092 0.826807260513306 0.999536712157816 hm5C_site_9454 DeepMRMD:0.826807260513306;iRNA_m5C:0.999536712157816 9455 chr6 28950014 28950014 1 + C A rs546018964 28950030 + 28950010 28950050 41 TCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGA TCACAGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGA < 41bp 1 0.196283563427128 1 0.102809190750122 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950030 chr6:28950014 . . 0 5 hm5C_associated_SNPs_6680 0 0 1 0 0 unknown 1 0.50022155544699 1 0.999556889106019 hm5C_site_9455 DeepMRMD:1;iRNA_m5C:0.999556889106019 9456 chr6 28950016 28950016 1 + C A rs192373984 28950005 + 28949985 28950025 41 GTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCG GTCTAGTGGTTAGGATTCGGCGCTCTCACCGACGCGGCCCG < 41bp 1 0.290457880084075 1 0.561325788497925 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950005 chr6:28950016 . . 0 32 hm5C_associated_SNPs_6681 0 0 1 0 0 unknown 1 0.500231646187493 0.87734842300415 0.999536707625013 hm5C_site_9456 DeepMRMD:0.87734842300415;iRNA_m5C:0.999536707625013 9457 chr6 28950016 28950016 1 + C A rs192373984 28950007 + 28949987 28950027 41 CTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGG CTAGTGGTTAGGATTCGGCGCTCTCACCGACGCGGCCCGGG < 41bp 1 0.0816194029173793 1 0.0836676955223083 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950007 chr6:28950016 . . 0 30 hm5C_associated_SNPs_6682 0 0 1 0 0 unknown 1 0.500231643921155 1 0.999536712157691 hm5C_site_9457 DeepMRMD:1;iRNA_m5C:0.999536712157691 9458 chr6 28950016 28950016 1 + C A rs192373984 28950009 + 28949989 28950029 41 AGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTT AGTGGTTAGGATTCGGCGCTCTCACCGACGCGGCCCGGGTT < 41bp 1 0.306652825145781 1 0.1136434674263 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950009 chr6:28950016 . . 0 28 hm5C_associated_SNPs_6683 0 0 1 0 0 unknown 1 0.500231644235614 1 0.999536711528773 hm5C_site_9458 DeepMRMD:1;iRNA_m5C:0.999536711528773 9459 chr6 28950016 28950016 1 + C A rs192373984 28950013 + 28949993 28950033 41 GTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGAT GTTAGGATTCGGCGCTCTCACCGACGCGGCCCGGGTTCGAT < 41bp 1 0.368565114015013 1 0.635092258453369 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950013 chr6:28950016 . . 0 24 hm5C_associated_SNPs_6685 0 0 1 0 0 unknown 1 0.500231645254184 0.729815483093262 0.999536709491632 hm5C_site_9459 DeepMRMD:0.729815483093262;iRNA_m5C:0.999536709491632 9460 chr6 28950016 28950016 1 + C A rs192373984 28950014 + 28949994 28950034 41 TTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATT TTAGGATTCGGCGCTCTCACCGACGCGGCCCGGGTTCGATT < 41bp 1 0.584983069500597 1 0.82353401184082 experiment 0.830033860998806 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950014 chr6:28950016 . . 0 23 hm5C_associated_SNPs_6686 0 0 1 0 0 unknown 1 0.500231637977768 0.35293197631836 0.999536724044464 hm5C_site_9460 DeepMRMD:0.35293197631836;iRNA_m5C:0.999536724044464 9461 chr6 28950016 28950016 1 + C A rs192373984 28950019 + 28949999 28950039 41 ATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGG ATTCGGCGCTCTCACCGACGCGGCCCGGGTTCGATTCCCGG < 41bp 1 0.438988096032184 1 0.22836846113205 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950019 chr6:28950016 . . 0 18 hm5C_associated_SNPs_6688 0 0 1 0 0 unknown 1 0.500231643922073 1 0.999536712155853 hm5C_site_9461 DeepMRMD:1;iRNA_m5C:0.999536712155853 9462 chr6 28950016 28950016 1 + C A rs192373984 28950022 + 28950002 28950042 41 CGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCA CGGCGCTCTCACCGACGCGGCCCGGGTTCGATTCCCGGTCA < 41bp 1 0.623154816517022 1 0.0890198349952698 experiment 0.753690366965956 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950022 chr6:28950016 . . 0 15 hm5C_associated_SNPs_6689 0 0 1 0 0 unknown 1 0.500231643849953 1 0.999536712300094 hm5C_site_9462 DeepMRMD:1;iRNA_m5C:0.999536712300094 9463 chr6 28950016 28950016 1 + C A rs192373984 28950023 + 28950003 28950043 41 GGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAG GGCGCTCTCACCGACGCGGCCCGGGTTCGATTCCCGGTCAG < 41bp 1 0.681822225172135 1 0.255304336547852 experiment 0.636355549655731 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950023 chr6:28950016 . . 0 14 hm5C_associated_SNPs_6690 0 0 1 0 0 unknown 1 0.500231643921188 1 0.999536712157625 hm5C_site_9463 DeepMRMD:1;iRNA_m5C:0.999536712157625 9464 chr6 28950016 28950016 1 + C A rs192373984 28950024 + 28950004 28950044 41 GCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGG GCGCTCTCACCGACGCGGCCCGGGTTCGATTCCCGGTCAGG < 41bp 1 0.459518266383712 1 0.138830423355103 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950024 chr6:28950016 . . 0 13 hm5C_associated_SNPs_6691 0 0 1 0 0 unknown 1 0.500231643783066 1 0.999536712433867 hm5C_site_9464 DeepMRMD:1;iRNA_m5C:0.999536712433867 9465 chr6 28950016 28950016 1 + C A rs192373984 28950030 + 28950010 28950050 41 TCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGA TCACCGACGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGA < 41bp 1 0.224346031727506 1 0.0619461536407471 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950030 chr6:28950016 . . 0 7 hm5C_associated_SNPs_6692 0 0 1 0 0 unknown 1 0.500231643246674 1 0.999536713506651 hm5C_site_9465 DeepMRMD:1;iRNA_m5C:0.999536713506651 9466 chr6 28950016 28950016 1 + C A rs192373984 28950035 + 28950015 28950055 41 GCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGAGGTTT GACGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGAGGTTT < 41bp 1 0.55290808515384 1 0.475483953952789 experiment 0.89418382969232 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950035 chr6:28950016 . . 0 2 hm5C_associated_SNPs_6693 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9466 DeepMRMD:1;iRNA_m5C:0.999536712157815 9467 chr6 28950016 28950016 1 + C A rs192373984 28950036 + 28950016 28950056 41 CCGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGAGGTTTT ACGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGAGGTTTT < 41bp 1 0.480304116271211 1 0.334665715694427 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950036 chr6:28950016 . . 0 1 hm5C_associated_SNPs_6694 0 0 1 0 0 unknown 1 0.500231522563886 1 0.999536954872227 hm5C_site_9467 DeepMRMD:1;iRNA_m5C:0.999536954872227 9468 chr6 28950035 28950035 1 + C A rs184275668 28950016 + 28949996 28950036 41 AGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCC AGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTAC < 41bp 1 0.432387303044083 1 0.790496110916138 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950016 chr6:28950035 . . 0 40 hm5C_associated_SNPs_6695 0 0 1 0 0 unknown 1 0.500231643457209 0.419007778167724 0.999536713085583 hm5C_site_9468 DeepMRMD:0.419007778167724;iRNA_m5C:0.999536713085583 9469 chr6 28950035 28950035 1 + C A rs184275668 28950017 + 28949997 28950037 41 GGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCC GGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTACC < 41bp 1 0.649087923734934 1 0.900254130363464 experiment 0.701824152530131 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950017 chr6:28950035 . . 0 39 hm5C_associated_SNPs_6696 0 0 1 0 0 unknown 1 0.500231643921092 0.199491739273072 0.999536712157815 hm5C_site_9469 DeepMRMD:0.199491739273072;iRNA_m5C:0.999536712157815 9470 chr6 28950035 28950035 1 + C A rs184275668 28950019 + 28949999 28950039 41 ATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGG ATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTACCGG < 41bp 1 0.339086568884958 1 0.474226295948029 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950019 chr6:28950035 . . 0 37 hm5C_associated_SNPs_6697 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_9470 DeepMRMD:1;iRNA_m5C:0.999536712157814 9471 chr6 28950035 28950035 1 + C A rs184275668 28950022 + 28950002 28950042 41 CGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCA CGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTACCGGTCA < 41bp 1 0.591352599906693 1 0.31808739900589 experiment 0.817294800186614 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950022 chr6:28950035 . . 0 34 hm5C_associated_SNPs_6698 0 0 1 0 0 unknown 1 0.500231643921338 1 0.999536712157323 hm5C_site_9471 DeepMRMD:1;iRNA_m5C:0.999536712157323 9472 chr6 28950035 28950035 1 + C A rs184275668 28950023 + 28950003 28950043 41 GGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAG GGCGCTCTCACCGCCGCGGCCCGGGTTCGATTACCGGTCAG < 41bp 1 0.697349658749163 1 0.235447019338608 experiment 0.605300682501673 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950023 chr6:28950035 . . 0 33 hm5C_associated_SNPs_6699 0 0 1 0 0 unknown 1 0.500231643921152 1 0.999536712157697 hm5C_site_9472 DeepMRMD:1;iRNA_m5C:0.999536712157697 9473 chr6 28950035 28950035 1 + C A rs184275668 28950024 + 28950004 28950044 41 GCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGG GCGCTCTCACCGCCGCGGCCCGGGTTCGATTACCGGTCAGG < 41bp 1 0.503400754897871 1 0.573260009288788 experiment 0.993198490204259 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950024 chr6:28950035 . . 0 32 hm5C_associated_SNPs_6700 0 0 1 0 0 unknown 1 0.500231643921092 0.853479981422424 0.999536712157815 hm5C_site_9473 DeepMRMD:0.853479981422424;iRNA_m5C:0.999536712157815 9474 chr6 28950035 28950035 1 + C A rs184275668 28950030 + 28950010 28950050 41 TCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGA TCACCGCCGCGGCCCGGGTTCGATTACCGGTCAGGGAATGA < 41bp 1 0.206906193962308 1 0.0828644037246704 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950030 chr6:28950035 . . 0 26 hm5C_associated_SNPs_6701 0 0 1 0 0 unknown 1 0.500231646238984 1 0.999536707522032 hm5C_site_9474 DeepMRMD:1;iRNA_m5C:0.999536707522032 9475 chr6 28950035 28950035 1 + C A rs184275668 28950036 + 28950016 28950056 41 CCGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGAGGTTTT CCGCGGCCCGGGTTCGATTACCGGTCAGGGAATGAGGTTTT < 41bp 1 0.476659347641573 1 0.347591817378998 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950036 chr6:28950035 . . 0 20 hm5C_associated_SNPs_6702 0 0 1 0 0 unknown 1 0.500231643925088 1 0.999536712149823 hm5C_site_9475 DeepMRMD:1;iRNA_m5C:0.999536712149823 9476 chr6 28950035 28950035 1 + C A rs184275668 28950037 + 28950017 28950057 41 CGCGGCCCGGGTTCGATTCCCGGTCAGGGAATGAGGTTTTT CGCGGCCCGGGTTCGATTACCGGTCAGGGAATGAGGTTTTT < 41bp 1 0.274117231126261 1 0.0816690325737 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01556;HCG15 ENSG00000263426;ENSG00000227214 intergenic Human other chr6:28950037 chr6:28950035 . . 0 19 hm5C_associated_SNPs_6703 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9476 DeepMRMD:1;iRNA_m5C:0.999536712157815 9477 chr6 28956824 28956824 1 + C A rs149603692 28956826 + 28956806 28956846 41 CTGGATTAAGGCTCCAGTCTCTTCGGGGGCGTGGGTTCAAA CTGGATTAAGGCTCCAGTATCTTCGGGGGCGTGGGTTCAAA < 41bp 1 0.492964427306985 1 0.196686863899231 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HCG15 ENSG00000244349 downstream Human antisense chr6:28956826 chr6:28956824 . . 0 19 hm5C_associated_SNPs_6705 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9477 DeepMRMD:1;iRNA_m5C:0.999536712157815 9478 chr6 28956834 28956834 1 + G A rs192922824 28956826 + 28956806 28956846 41 CTGGATTAAGGCTCCAGTCTCTTCGGGGGCGTGGGTTCAAA CTGGATTAAGGCTCCAGTCTCTTCGGGGACGTGGGTTCAAA < 41bp 1 0.435816863393753 1 0.218551009893417 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HCG15 ENSG00000244349 downstream Human antisense chr6:28956826 chr6:28956834 . . 0 29 hm5C_associated_SNPs_6707 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9478 DeepMRMD:1;iRNA_m5C:0.999536712157815 9479 chr6 28956834 28956834 1 + G A rs192922824 28956852 + 28956832 28956872 41 GGGCGTGGGTTCAAATCCCACCGCTGCCAAGTACTTTTCAT GGACGTGGGTTCAAATCCCACCGCTGCCAAGTACTTTTCAT < 41bp 1 0.207282993773978 1 0.0604961812496185 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG15 ENSG00000244349 downstream Human antisense chr6:28956852 chr6:28956834 . . 0 3 hm5C_associated_SNPs_6709 0 0 1 0 0 unknown 1 0.500231643922299 1 0.999536712155403 hm5C_site_9479 DeepMRMD:1;iRNA_m5C:0.999536712155403 9480 chr6 28956859 28956859 1 + C T rs555283073 28956852 + 28956832 28956872 41 GGGCGTGGGTTCAAATCCCACCGCTGCCAAGTACTTTTCAT GGGCGTGGGTTCAAATCCCACCGCTGCTAAGTACTTTTCAT < 41bp 1 0.19259339669284 1 0.0853090286254883 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HCG15 ENSG00000244349 downstream Human antisense chr6:28956852 chr6:28956859 . . 0 28 hm5C_associated_SNPs_6710 0 0 1 0 0 unknown 1 0.500231643940644 1 0.999536712118713 hm5C_site_9480 DeepMRMD:1;iRNA_m5C:0.999536712118713 9481 chr6 29693233 29693233 1 + C T rs57237143 29693226 + 29693206 29693246 41 CTTCCCTTCCTTTCCCAGAGCAGTCTCCCCAGCCCACCATC CTTCCCTTCCTTTCCCAGAGCAGTCTCTCCAGCCCACCATC < 41bp 1 0.204146981914463 1 0.121273249387741 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HLA-F ENSG00000204642 CDS Human protein_coding chr6:29693226 chr6:29693233 nonsynonymous SNV 0.013 1 28 hm5C_associated_SNPs_6711 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_9481 DeepMRMD:1;iRNA_m5C:0.999536712157815 9482 chr6 29797303 29797303 1 + G A rs79984266 29797286 + 29797266 29797306 41 GGCTTCTACCCTGCGGAGATCATACTGACCTGGCAGCGGGA GGCTTCTACCCTGCGGAGATCATACTGACCTGGCAGCAGGA < 41bp 1 0.151947621602787 1 0.190413862466812 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HLA-G ENSG00000204632 CDS Human protein_coding chr6:29797286 chr6:29797303 nonsynonymous SNV 0.000 2 38 hm5C_associated_SNPs_6712 0 0 0 0 0 exosome 1 0.500231642922101 1 0.999536714155799 hm5C_site_9482 DeepMRMD:1;iRNA_m5C:0.999536714155799 9483 chr6 29856303 29856303 1 + C T rs1611613 29856315 + 29856295 29856335 41 GCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAAG GCTTCCTCTGCGGGTATGAACAGCACGCCTACGACGGCAAG < 41bp 1 0.582635758411304 1 0.691569805145264 experiment 0.834728483177391 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HLA-H ENSG00000206341 ncRNA_exonic Human unprocessed_pseudogene chr6:29856315 chr6:29856303 . . 0 9 hm5C_associated_SNPs_6713 0 0 0 0 1 unknown 1 0.500231683822959 0.616860389709472 0.999536632354082 hm5C_site_9483 DeepMRMD:0.616860389709472;iRNA_m5C:0.999536632354082 9484 chr6 29856311 29856311 1 + T C rs533707369 29856315 + 29856295 29856335 41 GCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAAG GCTTCCTCCGCGGGTACGAACAGCACGCCTACGACGGCAAG < 41bp 1 0.5505604733698 1 0.627063393592834 experiment 0.898879053260401 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HLA-H ENSG00000206341 ncRNA_exonic Human unprocessed_pseudogene chr6:29856315 chr6:29856311 . . 0 17 hm5C_associated_SNPs_6714 0 0 0 0 1 unknown 1 0.500231643922804 0.745873212814332 0.999536712154392 hm5C_site_9484 DeepMRMD:0.745873212814332;iRNA_m5C:0.999536712154392 9485 chr6 29856312 29856312 1 + G A rs553922966 29856315 + 29856295 29856335 41 GCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAAG GCTTCCTCCGCGGGTATAAACAGCACGCCTACGACGGCAAG < 41bp 1 0.665815230545268 1 0.56841254234314 experiment 0.668369538909464 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HLA-H ENSG00000206341 ncRNA_exonic Human unprocessed_pseudogene chr6:29856315 chr6:29856312 . . 0 18 hm5C_associated_SNPs_6715 0 0 0 0 1 unknown 1 0.500231643921093 0.86317491531372 0.999536712157815 hm5C_site_9485 DeepMRMD:0.86317491531372;iRNA_m5C:0.999536712157815 9486 chr6 29856314 29856314 1 + A C rs577110292 29856315 + 29856295 29856335 41 GCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAAG GCTTCCTCCGCGGGTATGACCAGCACGCCTACGACGGCAAG < 41bp 1 0.579713074158177 1 0.755620181560516 experiment 0.840573851683646 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HLA-H ENSG00000206341 ncRNA_exonic Human unprocessed_pseudogene chr6:29856315 chr6:29856314 . . 0 20 hm5C_associated_SNPs_6716 0 0 0 0 1 unknown 1 0.500231643921094 0.488759636878968 0.999536712157812 hm5C_site_9486 DeepMRMD:0.488759636878968;iRNA_m5C:0.999536712157812 9487 chr6 29856330 29856330 1 + G A rs2428512 29856315 + 29856295 29856335 41 GCTTCCTCCGCGGGTATGAACAGCACGCCTACGACGGCAAG GCTTCCTCCGCGGGTATGAACAGCACGCCTACGACAGCAAG < 41bp 1 0.568349714245646 1 0.413462042808533 experiment 0.863300571508709 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HLA-H ENSG00000206341 ncRNA_exonic Human unprocessed_pseudogene chr6:29856315 chr6:29856330 . . 0 36 hm5C_associated_SNPs_6718 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9487 DeepMRMD:1;iRNA_m5C:0.999536712157815 9488 chr6 29910522 29910522 1 + G A rs9260130 29910541 + 29910521 29910561 41 TGCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCTTCAC TACTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCTTCAC < 41bp 1 0.647117681546762 1 0.983335018157959 experiment 0.705764636906477 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HLA-A ENSG00000227766 ncRNA_exonic Human unprocessed_pseudogene chr6:29910541 chr6:29910522 . . 0 2 hm5C_associated_SNPs_6719 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643937451 0.033329963684082 0.999536712125097 hm5C_site_9488 DeepMRMD:0.033329963684082;iRNA_m5C:0.999536712125097 9489 chr6 29910557 29910557 1 + T A rs1136659 29910541 + 29910521 29910561 41 TGCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCTTCAC TGCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCATCAC < 41bp 1 0.682593175440258 1 0.98685896396637 experiment 0.634813649119484 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29910541 chr6:29910557 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_6720 0 0 1 0 0 Endoplasmic reticulum 1 0.500231610688462 0.0262820720672601 0.999536778623077 hm5C_site_9489 DeepMRMD:0.0262820720672601;iRNA_m5C:0.999536778623077 9490 chr6 29910558 29910558 1 + T A rs2075684 29910541 + 29910521 29910561 41 TGCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCTTCAC TGCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCTACAC < 41bp 1 0.686272790167758 1 0.981662094593048 experiment 0.627454419664484 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29910541 chr6:29910558 nonsynonymous SNV 0.000 0 38 hm5C_associated_SNPs_6721 0 0 1 0 0 Endoplasmic reticulum 1 0.500231642363614 0.036675810813904 0.999536715272772 hm5C_site_9490 DeepMRMD:0.036675810813904;iRNA_m5C:0.999536715272772 9491 chr6 29910586 29910586 1 + G A rs12721672 29910604 + 29910584 29910624 41 GGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACAC GGAGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACAC < 41bp 1 0.636675171065304 1 0.704601407051086 experiment 0.726649657869393 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29910604 chr6:29910586 synonymous SNV . 0 3 hm5C_associated_SNPs_6722 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.590797185897828 0.999536712157815 hm5C_site_9491 DeepMRMD:0.590797185897828;iRNA_m5C:0.999536712157815 9492 chr6 29910587 29910587 1 + G A rs41549014 29910604 + 29910584 29910624 41 GGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACAC GGGAAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACAC < 41bp 1 0.630638153918094 1 0.739784061908722 experiment 0.738723692163812 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29910604 chr6:29910587 nonsynonymous SNV 0.001 3 4 hm5C_associated_SNPs_6723 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643915873 0.520431876182556 0.999536712168253 hm5C_site_9492 DeepMRMD:0.520431876182556;iRNA_m5C:0.999536712168253 9493 chr6 29910623 29910623 1 + A T rs1059438 29910604 + 29910584 29910624 41 GGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACAC GGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACTC < 41bp 1 0.648670197348618 1 0.781319856643677 experiment 0.702659605302764 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29910604 chr6:29910623 nonsynonymous SNV 0.849 1 40 hm5C_associated_SNPs_6724 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643818766 0.437360286712646 0.999536712362468 hm5C_site_9493 DeepMRMD:0.437360286712646;iRNA_m5C:0.999536712362468 9494 chr6 29911256 29911256 1 + T A rs1059542 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGAAGGCACGTGCGTGGAGTGGCTCCGCAGATA < 41bp 1 0.585054444615514 1 0.4251349568367 experiment 0.829891110768972 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911256 nonsynonymous SNV 0.005 0 12 hm5C_associated_SNPs_6725 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643909061 1 0.999536712181879 hm5C_site_9494 DeepMRMD:1;iRNA_m5C:0.999536712181879 9495 chr6 29911260 29911260 1 + A C rs543623321 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGATGGCCCGTGCGTGGAGTGGCTCCGCAGATA < 41bp 1 0.585830330319252 1 0.461565613746643 experiment 0.828339339361497 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911260 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_6726 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643922741 1 0.999536712154518 hm5C_site_9495 DeepMRMD:1;iRNA_m5C:0.999536712154518 9496 chr6 29911260 29911260 1 + A C rs543623321 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCCCGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG < 41bp 1 0.591449294038074 1 0.180871844291687 experiment 0.817101411923853 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911260 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_6727 0 0 1 0 1 Endoplasmic reticulum 1 0.500231629519743 1 0.999536740960513 hm5C_site_9496 DeepMRMD:1;iRNA_m5C:0.999536740960513 9497 chr6 29911260 29911260 1 + A C rs543623321 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCCCGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG < 41bp 1 0.46316561906773 1 0.515647530555725 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911260 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_6728 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 0.96870493888855 0.999536712157814 hm5C_site_9497 DeepMRMD:0.96870493888855;iRNA_m5C:0.999536712157814 9498 chr6 29911271 29911271 1 + G C rs879577815 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGATGGCACGTGCGTGGACTGGCTCCGCAGATA < 41bp 1 0.5657046024657 1 0.405526280403137 experiment 0.8685907950686 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911271 nonsynonymous SNV 0.005 0 27 hm5C_associated_SNPs_6729 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644411474 1 0.999536711177052 hm5C_site_9498 DeepMRMD:1;iRNA_m5C:0.999536711177052 9499 chr6 29911271 29911271 1 + G C rs879577815 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGTGCGTGGACTGGCTCCGCAGATACCTGGAGAACGG < 41bp 1 0.567674795883049 1 0.161789447069168 experiment 0.864650408233901 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911271 nonsynonymous SNV 0.005 0 15 hm5C_associated_SNPs_6730 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_9499 DeepMRMD:1;iRNA_m5C:0.999536712157815 9500 chr6 29911271 29911271 1 + G C rs879577815 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGTGCGTGGACTGGCTCCGCAGATACCTGGAGAACGGG < 41bp 1 0.405656606688441 1 0.394662618637085 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911271 nonsynonymous SNV 0.005 0 14 hm5C_associated_SNPs_6731 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643924707 1 0.999536712150585 hm5C_site_9500 DeepMRMD:1;iRNA_m5C:0.999536712150585 9501 chr6 29911272 29911272 1 + T A rs3098019 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGATGGCACGTGCGTGGAGAGGCTCCGCAGATA < 41bp 1 0.592603726610829 1 0.383635848760605 experiment 0.814792546778342 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911272 nonsynonymous SNV 0.003 1 28 hm5C_associated_SNPs_6732 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921761 1 0.999536712156478 hm5C_site_9501 DeepMRMD:1;iRNA_m5C:0.999536712156478 9502 chr6 29911272 29911272 1 + T A rs3098019 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGTGCGTGGAGAGGCTCCGCAGATACCTGGAGAACGG < 41bp 1 0.552800109043016 1 0.129175812005997 experiment 0.894399781913968 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911272 nonsynonymous SNV 0.003 1 16 hm5C_associated_SNPs_6733 0 0 0 0 1 Endoplasmic reticulum 1 0.500231655093117 1 0.999536689813767 hm5C_site_9502 DeepMRMD:1;iRNA_m5C:0.999536689813767 9503 chr6 29911272 29911272 1 + T A rs3098019 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGTGCGTGGAGAGGCTCCGCAGATACCTGGAGAACGGG < 41bp 1 0.43993615647795 1 0.341044902801514 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911272 nonsynonymous SNV 0.003 1 15 hm5C_associated_SNPs_6734 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_9503 DeepMRMD:1;iRNA_m5C:0.999536712157815 9504 chr6 29911284 29911284 1 + T C rs41563116 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGACA < 41bp 1 0.574719552906971 1 0.322111189365387 experiment 0.850560894186059 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911284 nonsynonymous SNV 0.002 2 40 hm5C_associated_SNPs_6735 0 0 1 0 1 Endoplasmic reticulum 1 0.500231545928956 1 0.999536908142088 hm5C_site_9504 DeepMRMD:1;iRNA_m5C:0.999536908142088 9505 chr6 29911284 29911284 1 + T C rs41563116 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGTGCGTGGAGTGGCTCCGCAGACACCTGGAGAACGG < 41bp 1 0.58430648513266 1 0.245710849761963 experiment 0.83138702973468 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911284 nonsynonymous SNV 0.002 2 28 hm5C_associated_SNPs_6736 0 0 1 0 1 Endoplasmic reticulum 1 0.500231650616506 1 0.999536698766989 hm5C_site_9505 DeepMRMD:1;iRNA_m5C:0.999536698766989 9506 chr6 29911284 29911284 1 + T C rs41563116 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGTGCGTGGAGTGGCTCCGCAGACACCTGGAGAACGGG < 41bp 1 0.389149413702261 1 0.641611278057098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911284 nonsynonymous SNV 0.002 2 27 hm5C_associated_SNPs_6737 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921126 0.716777443885804 0.999536712157749 hm5C_site_9506 DeepMRMD:0.716777443885804;iRNA_m5C:0.999536712157749 9507 chr6 29911951 29911951 1 + C T rs1059570 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAGGCCACTCTGAGGTGCTGGGCCCTGGGCTTCTACCC < 41bp 1 0.663942523189825 1 0.432735025882721 experiment 0.672114953620349 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911951 synonymous SNV . 0 12 hm5C_associated_SNPs_6738 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921125 1 0.999536712157749 hm5C_site_9507 DeepMRMD:1;iRNA_m5C:0.999536712157749 9508 chr6 29913365 29913365 1 + G A rs181754482 29913374 + 29913354 29913394 41 AATGTGAGGAGGTGGGGAGACCACCCCACCCCCATGTCCAC AATGTGAGGAGATGGGGAGACCACCCCACCCCCATGTCCAC < 41bp 1 0.359444040827309 1 0.264895021915436 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HLA-A ENSG00000206503 UTR3 Human protein_coding chr6:29913374 chr6:29913365 . . 0 12 hm5C_associated_SNPs_6740 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643902396 1 0.999536712195209 hm5C_site_9508 DeepMRMD:1;iRNA_m5C:0.999536712195209 9509 chr6 29913367 29913367 1 + G A rs113042145 29913374 + 29913354 29913394 41 AATGTGAGGAGGTGGGGAGACCACCCCACCCCCATGTCCAC AATGTGAGGAGGTAGGGAGACCACCCCACCCCCATGTCCAC < 41bp 1 0.353826238557524 1 0.14007505774498 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HLA-A ENSG00000206503 UTR3 Human protein_coding chr6:29913374 chr6:29913367 . . 0 14 hm5C_associated_SNPs_6741 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_9509 DeepMRMD:1;iRNA_m5C:0.999536712157815 9510 chr6 29913386 29913386 1 + C G rs41545022 29913374 + 29913354 29913394 41 AATGTGAGGAGGTGGGGAGACCACCCCACCCCCATGTCCAC AATGTGAGGAGGTGGGGAGACCACCCCACCCCGATGTCCAC < 41bp 1 0.374374279637137 1 0.211485713720322 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HLA-A ENSG00000206503 UTR3 Human protein_coding chr6:29913374 chr6:29913386 . . 0 33 hm5C_associated_SNPs_6742 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164388051 1 0.999536712238981 hm5C_site_9510 DeepMRMD:1;iRNA_m5C:0.999536712238981 9511 chr6 29976024 29976024 1 + C G rs3765604 29976025 + 29976005 29976045 41 ACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACCC ACATGAGGCATAACGAGGTGCTGGGTTCTGGGCTTCTACCC < 41bp 1 0.536282241365347 1 0.554655611515045 experiment 0.927435517269306 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976025 chr6:29976024 . . 0 20 hm5C_associated_SNPs_6744 0 0 0 0 1 unknown 1 0.500231643921092 0.89068877696991 0.999536712157815 hm5C_site_9511 DeepMRMD:0.89068877696991;iRNA_m5C:0.999536712157815 9512 chr6 30312925 30312925 1 + G A rs568739145 30312944 + 30312924 30312964 41 CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGA CAGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGA < 41bp 1 0.529352398118452 1 0.450176328420639 experiment 0.941295203763095 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPP21 ENSG00000241370 UTR5 Human protein_coding chr6:30312944 chr6:30312925 . . 0 2 hm5C_associated_SNPs_6745 0 0 0 0 1 Cytosol 1 0.500231643920953 1 0.999536712158093 hm5C_site_9512 DeepMRMD:1;iRNA_m5C:0.999536712158093 9513 chr6 30312945 30312945 1 + G A rs371403510 30312944 + 30312924 30312964 41 CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGA CGGGAGGCCCTGGAGCGCGGCAGTGATGGCGGGGCCGGTGA < 41bp 1 0.49803942007219 1 0.188311874866486 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPP21 ENSG00000241370 UTR5 Human protein_coding chr6:30312944 chr6:30312945 . . 0 22 hm5C_associated_SNPs_6746 0 0 1 0 1 Cytosol 1 0.500231643839256 1 0.999536712321489 hm5C_site_9513 DeepMRMD:1;iRNA_m5C:0.999536712321489 9514 chr6 30312958 30312958 1 + C T rs199499005 30312944 + 30312924 30312964 41 CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGA CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGTCGGTGA < 41bp 1 0.532406958541922 1 0.419242382049561 experiment 0.935186082916156 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPP21 ENSG00000241370 CDS Human protein_coding chr6:30312944 chr6:30312958 nonsynonymous SNV 0.879 0 35 hm5C_associated_SNPs_6747 0 0 1 0 1 Cytosol 1 0.500231643917373 1 0.999536712165253 hm5C_site_9514 DeepMRMD:1;iRNA_m5C:0.999536712165253 9515 chr6 30312962 30312962 1 + T G rs201417696 30312944 + 30312924 30312964 41 CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGA CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGGGA < 41bp 1 0.538166512958456 1 0.471979886293411 experiment 0.923666974083088 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPP21 ENSG00000241370 CDS Human protein_coding chr6:30312944 chr6:30312962 nonsynonymous SNV 0.962 4 39 hm5C_associated_SNPs_6748 0 0 1 0 1 Cytosol 1 0.500231643921089 1 0.999536712157822 hm5C_site_9515 DeepMRMD:1;iRNA_m5C:0.999536712157822 9516 chr6 30545627 30545627 1 + G A rs547655254 30545611 + 30545591 30545631 41 ATAGTTCTTTGAAGAGCTGGCAGTAGAAGATAAACAGGCTG ATAGTTCTTTGAAGAGCTGGCAGTAGAAGATAAACAAGCTG < 41bp 1 0.271920585774052 1 0.318334102630615 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545611 chr6:30545627 synonymous SNV . 0 37 hm5C_associated_SNPs_6749 0 0 1 0 2 Endoplasmic reticulum 1 0.50023165045885 1 0.999536699082301 hm5C_site_9516 DeepMRMD:1;iRNA_m5C:0.999536699082301 9517 chr6 30545879 30545879 1 + A G rs113473909 30545872 + 30545852 30545892 41 GCAAAAAAAAAAGCGAGATACCCGAAAAGGCAGGCGGAAGA GCAAAAAAAAAAGCGAGATACCCGAAAGGGCAGGCGGAAGA < 41bp 1 0.469541288668334 1 0.401990920305252 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545872 chr6:30545879 synonymous SNV . 0 28 hm5C_associated_SNPs_6750 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643919555 1 0.999536712160889 hm5C_site_9517 DeepMRMD:1;iRNA_m5C:0.999536712160889 9518 chr6 30545879 30545879 1 + A G rs113473909 30545886 + 30545866 30545906 41 GAGATACCCGAAAAGGCAGGCGGAAGAAGGATGTGGATGAT GAGATACCCGAAAGGGCAGGCGGAAGAAGGATGTGGATGAT < 41bp 1 0.552008577766439 1 0.855071604251862 experiment 0.895982844467122 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545886 chr6:30545879 synonymous SNV . 0 14 hm5C_associated_SNPs_6751 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920629 0.289856791496276 0.999536712158742 hm5C_site_9518 DeepMRMD:0.289856791496276;iRNA_m5C:0.999536712158742 9519 chr6 30552187 30552187 1 + C G rs372113020 30552191 + 30552171 30552211 41 GTGTCCTCTTCTCCCTCCTCCCAGGTGTATGAGGAATTGCG GTGTCCTCTTCTCCCTGCTCCCAGGTGTATGAGGAATTGCG < 41bp 1 0.0941492108915935 1 0.0915393531322479 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MIR877 ENSG00000216101 ncRNA_exonic Human miRNA chr6:30552191 chr6:30552187 . . 0 17 hm5C_associated_SNPs_6752 0 0 1 0 0 unknown 1 0.500231648229305 1 0.99953670354139 hm5C_site_9519 DeepMRMD:1;iRNA_m5C:0.99953670354139 9520 chr6 30552187 30552187 1 + C G rs372113020 30552192 + 30552172 30552212 41 TGTCCTCTTCTCCCTCCTCCCAGGTGTATGAGGAATTGCGG TGTCCTCTTCTCCCTGCTCCCAGGTGTATGAGGAATTGCGG < 41bp 1 0.471548285406505 1 0.537522256374359 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MIR877 ENSG00000216101 ncRNA_exonic Human miRNA chr6:30552192 chr6:30552187 . . 0 16 hm5C_associated_SNPs_6753 0 0 1 0 0 unknown 1 0.500231643883429 0.924955487251282 0.999536712233141 hm5C_site_9520 DeepMRMD:0.924955487251282;iRNA_m5C:0.999536712233141 9521 chr6 30593485 30593485 1 + C G rs34315095 30593484 + 30593464 30593504 41 CATCTCCAAGAAGAGAGTGGCCCCCCACCTGAGTCAATGCC CATCTCCAAGAAGAGAGTGGCGCCCCACCTGAGTCAATGCC < 41bp 1 0.283442817750773 1 0.35805344581604 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS18B ENSG00000204568 CDS Human protein_coding chr6:30593484 chr6:30593485 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_6754 0 0 1 0 0 Cytosol 1 0.50023164464335 1 0.9995367107133 hm5C_site_9521 DeepMRMD:1;iRNA_m5C:0.9995367107133 9522 chr6 30608358 30608358 1 + T C rs144917944 30608360 + 30608340 30608380 41 TCGACACTCTCGTGCTGCTGCAGTCGATCCCACGCCCGCTG TCGACACTCTCGTGCTGCCGCAGTCGATCCCACGCCCGCTG < 41bp 1 0.227794682915665 1 0.76649671792984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATAT1 ENSG00000137343 CDS Human protein_coding chr6:30608360 chr6:30608358 synonymous SNV . 0 19 hm5C_associated_SNPs_6755 0 0 0 0 2 chromatin 1 0.500231643923224 0.46700656414032 0.999536712153552 hm5C_site_9522 DeepMRMD:0.46700656414032;iRNA_m5C:0.999536712153552 9523 chr6 30689665 30689665 1 + G A rs187119487 30689671 + 30689651 30689691 41 TTAAAATGGGAGATGTGGGGCCGAGGTGGGCGAATTGGGAT TTAAAATGGGAGATATGGGGCCGAGGTGGGCGAATTGGGAT < 41bp 1 0.275960128265109 1 0.444751381874084 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TUBB ENSG00000196230 UTR5 Human protein_coding chr6:30689671 chr6:30689665 . . 0 15 hm5C_associated_SNPs_6756 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_9523 DeepMRMD:1;iRNA_m5C:0.999536712157815 9524 chr6 30689665 30689665 1 + G A rs187119487 30689672 + 30689652 30689692 41 TAAAATGGGAGATGTGGGGCCGAGGTGGGCGAATTGGGATC TAAAATGGGAGATATGGGGCCGAGGTGGGCGAATTGGGATC < 41bp 1 0.511225473577626 1 0.767280876636505 experiment 0.977549052844748 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TUBB ENSG00000196230 UTR5 Human protein_coding chr6:30689672 chr6:30689665 . . 0 14 hm5C_associated_SNPs_6757 0 0 1 0 1 Cytosol 1 0.500231643921256 0.46543824672699 0.999536712157488 hm5C_site_9524 DeepMRMD:0.46543824672699;iRNA_m5C:0.999536712157488 9525 chr6 30857003 30857003 1 + G A rs146275209 30857005 + 30856985 30857025 41 GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCGG GAGCAGTGACGGGGATGGAGCCTGGTGCCCCGCAGGGTCGG < 41bp 1 0.347053305067927 1 0.421445935964584 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30857005 chr6:30857003 synonymous SNV . 0 19 hm5C_associated_SNPs_6758 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9525 DeepMRMD:1;iRNA_m5C:0.999536712157815 9526 chr6 30887988 30887988 1 + C T rs2249459 30887972 + 30887952 30887992 41 GAGGATGGGACCATGACCTCCCTCTGCGGGGACTGGCTGCA GAGGATGGGACCATGACCTCCCTCTGCGGGGACTGGTTGCA < 41bp 1 0.101983021231408 1 0.286471366882324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30887972 chr6:30887988 synonymous SNV . 0 37 hm5C_associated_SNPs_6759 1 0 1 0 1 Ribosome 1 0.500235825607009 1 0.999528348785981 hm5C_site_9526 DeepMRMD:1;iRNA_m5C:0.999528348785981 not specified not specified 9527 chr6 31126409 31126409 1 + G T rs17197101 31126398 + 31126378 31126418 41 TCTTGGCTGTCAAACAGATGCAGCAACGTCGGCTCCTGCCG TCTTGGCTGTCAAACAGATGCAGCAACGTCGTCTCCTGCCG < 41bp 1 0.664942496720064 1 0.347355872392654 experiment 0.670115006559871 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TCF19 ENSG00000137310 UTR5 Human protein_coding chr6:31126398 chr6:31126409 . . 0 32 hm5C_associated_SNPs_6760 0 0 1 0 1 nucleolus 1 0.500219701633458 1 0.999560596733085 hm5C_site_9527 DeepMRMD:1;iRNA_m5C:0.999560596733085 9528 chr6 31131060 31131060 1 + C T rs139130055 31131055 + 31131035 31131075 41 TCTTGTGGGTCTGTGATATTCCTTGCTTTCCAGGGAGAATG TCTTGTGGGTCTGTGATATTCCTTGTTTTCCAGGGAGAATG < 41bp 1 0.0421290210198415 1 0.0206445455551147 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TCF19 ENSG00000137310 UTR3 Human protein_coding chr6:31131055 chr6:31131060 . . 0 26 hm5C_associated_SNPs_6761 0 0 1 0 0 nucleolus 1 0.500231125266027 1 0.999537749467946 hm5C_site_9528 DeepMRMD:1;iRNA_m5C:0.999537749467946 9529 chr6 31378425 31378425 1 + A C rs1051786 31378418 + 31378398 31378438 41 ATCTGGATGGTCAGCCCTTCCTGCGCTATGACAGGCAGAAA ATCTGGATGGTCAGCCCTTCCTGCGCTCTGACAGGCAGAAA < 41bp 1 0.660093380375821 1 0.22171938419342 experiment 0.679813239248357 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MICA ENSG00000204520 CDS Human protein_coding chr6:31378418 chr6:31378425 nonsynonymous SNV 0.000 1 28 hm5C_associated_SNPs_6762 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_9529 DeepMRMD:1;iRNA_m5C:0.999536712157816 9530 chr6 31590898 31590898 1 + C T rs2736172 31590883 + 31590863 31590903 41 ACAAAGGCGTGTCTGTGGTTCCCTGTCTTTGGACACGTAAG ACAAAGGCGTGTCTGTGGTTCCCTGTCTTTGGACATGTAAG < 41bp 1 0.0447494573760968 1 0.0320070385932922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA38 ENSG00000200816 ncRNA_exonic Human snoRNA chr6:31590883 chr6:31590898 . . 0 36 hm5C_associated_SNPs_6764 0 1 1 1 0 unknown 1 0.500231643921516 1 0.999536712156968 hm5C_site_9530 DeepMRMD:1;iRNA_m5C:0.999536712156968 9531 chr6 31590898 31590898 1 + C T rs2736172 31590889 + 31590869 31590909 41 GCGTGTCTGTGGTTCCCTGTCTTTGGACACGTAAGAATTGG GCGTGTCTGTGGTTCCCTGTCTTTGGACATGTAAGAATTGG < 41bp 1 0.074606539231422 1 0.174413025379181 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA38 ENSG00000200816 ncRNA_exonic Human snoRNA chr6:31590889 chr6:31590898 . . 0 30 hm5C_associated_SNPs_6765 0 1 1 1 0 unknown 1 0.50023164392045 1 0.999536712159099 hm5C_site_9531 DeepMRMD:1;iRNA_m5C:0.999536712159099 9532 chr6 31593369 31593369 1 + G A rs114452424 31593350 + 31593330 31593370 41 GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCAC < 41bp 1 0.566185942779908 1 0.336709380149841 experiment 0.867628114440183 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593350 chr6:31593369 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_6766 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9532 DeepMRMD:1;iRNA_m5C:0.999536712157815 9533 chr6 31593369 31593369 1 + G A rs114452424 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCACG < 41bp 1 0.36544533776436 1 0.109040707349777 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593369 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_6767 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9533 DeepMRMD:1;iRNA_m5C:0.999536712157815 9534 chr6 31593369 31593369 1 + G A rs114452424 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCACGG < 41bp 1 0.355539559469808 1 0.118464022874832 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593369 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_6768 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9534 DeepMRMD:1;iRNA_m5C:0.999536712157815 9535 chr6 31593369 31593369 1 + G A rs114452424 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCACGGA < 41bp 1 0.288302461282662 1 0.393140733242035 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593369 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_6769 0 0 1 1 1 Ribosome 1 0.500231643921062 1 0.999536712157877 hm5C_site_9535 DeepMRMD:1;iRNA_m5C:0.999536712157877 9536 chr6 31593369 31593369 1 + G A rs114452424 31593388 + 31593368 31593408 41 CGCGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC CACGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC < 41bp 1 0.645230880408024 1 0.700056076049805 experiment 0.709538239183951 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593388 chr6:31593369 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_6770 0 0 1 1 1 Ribosome 1 0.500233813423607 0.59988784790039 0.999532373152787 hm5C_site_9536 DeepMRMD:0.59988784790039;iRNA_m5C:0.999532373152787 9537 chr6 31595926 31595926 1 + C A rs45544132 31595942 + 31595922 31595962 41 TACTCCTACTCCAGGTGTGGCTGCGGCTCCCACTCTGGTGA TACTACTACTCCAGGTGTGGCTGCGGCTCCCACTCTGGTGA < 41bp 1 0.593479459865421 1 0.189402759075165 experiment 0.813041080269158 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31595942 chr6:31595926 nonsynonymous SNV 0.145 2 5 hm5C_associated_SNPs_6771 0 0 1 0 1 Ribosome 1 0.500231089501872 1 0.999537820996257 hm5C_site_9537 DeepMRMD:1;iRNA_m5C:0.999537820996257 9538 chr6 31599980 31599980 1 + C T rs201846219 31599963 + 31599943 31599983 41 GGGGTGCCATCTCGCCGGGGCCGAGGAGGAGGGAGGCCCCC GGGGTGCCATCTCGCCGGGGCCGAGGAGGAGGGAGGCTCCC < 41bp 1 0.387924205560503 1 0.564118623733521 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31599963 chr6:31599980 nonsynonymous SNV 0.969 2 38 hm5C_associated_SNPs_6773 0 0 1 0 0 Ribosome 1 0.500231672052966 0.871762752532958 0.999536655894067 hm5C_site_9538 DeepMRMD:0.871762752532958;iRNA_m5C:0.999536655894067 9539 chr6 31602074 31602074 1 + C G rs144034863 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCGTCAG < 41bp 1 0.487560972242175 1 0.271087348461151 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602074 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_6774 0 0 1 0 2 Ribosome 1 0.500231643936618 1 0.999536712126763 hm5C_site_9539 DeepMRMD:1;iRNA_m5C:0.999536712126763 9540 chr6 31602074 31602074 1 + C G rs144034863 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCGTCAGG < 41bp 1 0.502746048765683 1 0.749370098114014 experiment 0.994507902468634 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602074 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_6775 0 0 1 0 2 Ribosome 1 0.500231643921092 0.501259803771972 0.999536712157815 hm5C_site_9540 DeepMRMD:0.501259803771972;iRNA_m5C:0.999536712157815 9541 chr6 31602074 31602074 1 + C G rs144034863 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCAGGCCGTCAGGCAGAGTC < 41bp 1 0.260223299812578 1 0.354826688766479 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602074 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_6776 0 0 1 0 2 Ribosome 1 0.500231643920354 1 0.999536712159292 hm5C_site_9541 DeepMRMD:1;iRNA_m5C:0.999536712159292 9542 chr6 31602074 31602074 1 + C G rs144034863 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGA < 41bp 1 0.186705528870094 1 0.0706175863742828 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602074 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_6777 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_9542 DeepMRMD:1;iRNA_m5C:0.999536712157815 9543 chr6 31602074 31602074 1 + C G rs144034863 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGAT < 41bp 1 0.469138554883354 1 0.22318822145462 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602074 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_6778 0 0 1 0 2 Ribosome 1 0.500231643921268 1 0.999536712157463 hm5C_site_9543 DeepMRMD:1;iRNA_m5C:0.999536712157463 9544 chr6 31602074 31602074 1 + C G rs144034863 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGATACA < 41bp 1 0.409082310227153 1 0.772096991539001 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602074 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_6779 0 0 1 0 2 Ribosome 1 0.50023166827102 0.455806016921998 0.999536663457961 hm5C_site_9544 DeepMRMD:0.455806016921998;iRNA_m5C:0.999536663457961 9545 chr6 31602074 31602074 1 + C G rs144034863 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCGTCAGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.425746639225377 1 0.774823069572449 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602074 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_6780 0 0 1 0 2 Ribosome 1 0.500231643921054 0.450353860855102 0.999536712157892 hm5C_site_9545 DeepMRMD:0.450353860855102;iRNA_m5C:0.999536712157892 9546 chr6 31602077 31602077 1 + A G rs560980870 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCGG < 41bp 1 0.503680517065197 1 0.419857740402222 experiment 0.992638965869605 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602077 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_6781 0 0 1 0 2 Ribosome 1 0.500231643920987 1 0.999536712158027 hm5C_site_9546 DeepMRMD:1;iRNA_m5C:0.999536712158027 9547 chr6 31602077 31602077 1 + A G rs560980870 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCGGG < 41bp 1 0.533494671061731 1 0.875336587429047 experiment 0.933010657876538 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602077 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_6782 0 0 1 0 2 Ribosome 1 0.500231643921092 0.249326825141906 0.999536712157815 hm5C_site_9547 DeepMRMD:0.249326825141906;iRNA_m5C:0.999536712157815 9548 chr6 31602077 31602077 1 + A G rs560980870 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCGGGCAGAGTC < 41bp 1 0.247144381946531 1 0.338803112506866 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602077 nonsynonymous SNV 1.000 0 32 hm5C_associated_SNPs_6783 0 0 1 0 2 Ribosome 1 0.500231643988222 1 0.999536712023555 hm5C_site_9548 DeepMRMD:1;iRNA_m5C:0.999536712023555 9549 chr6 31602077 31602077 1 + A G rs560980870 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGA < 41bp 1 0.181829434868169 1 0.107433527708054 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602077 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_6784 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9549 DeepMRMD:1;iRNA_m5C:0.999536712157815 9550 chr6 31602077 31602077 1 + A G rs560980870 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGAT < 41bp 1 0.255720665207578 1 0.17361968755722 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602077 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_6785 0 0 1 0 2 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_9550 DeepMRMD:1;iRNA_m5C:0.999536712157812 9551 chr6 31602077 31602077 1 + A G rs560980870 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGATA < 41bp 1 0.500283979152215 1 0.668254315853119 experiment 0.999432041695571 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602077 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_6786 0 0 1 0 2 Ribosome 1 0.500231643921092 0.663491368293762 0.999536712157815 hm5C_site_9551 DeepMRMD:0.663491368293762;iRNA_m5C:0.999536712157815 9552 chr6 31602077 31602077 1 + A G rs560980870 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGATACA < 41bp 1 0.47147156591656 1 0.865618705749512 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602077 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_6787 0 0 1 0 2 Ribosome 1 0.500231643921092 0.268762588500976 0.999536712157815 hm5C_site_9552 DeepMRMD:0.268762588500976;iRNA_m5C:0.999536712157815 9553 chr6 31602077 31602077 1 + A G rs560980870 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTCGGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.362197380869522 1 0.585389614105225 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602077 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_6788 0 0 1 0 2 Ribosome 1 0.500231643921092 0.82922077178955 0.999536712157815 hm5C_site_9553 DeepMRMD:0.82922077178955;iRNA_m5C:0.999536712157815 9554 chr6 31604591 31604591 1 + C T rs10885 31604592 + 31604572 31604612 41 ACCACCTCCTGCCCCACCTCCCCTTTCTCTGTTACCTGTGG ACCACCTCCTGCCCCACCTTCCCTTTCTCTGTTACCTGTGG < 41bp 1 0.199365589617831 1 0.138335734605789 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604592 chr6:31604591 nonsynonymous SNV 0.983 3 20 hm5C_associated_SNPs_6789 0 0 1 0 1 Ribosome 1 0.500231643932201 1 0.999536712135599 hm5C_site_9554 DeepMRMD:1;iRNA_m5C:0.999536712135599 Menarche (age at onset) 9555 chr6 31604591 31604591 1 + C T rs10885 31604607 + 31604587 31604627 41 ACCTCCCCTTTCTCTGTTACCTGTGGGCCCTGCTCTGCAGC ACCTTCCCTTTCTCTGTTACCTGTGGGCCCTGCTCTGCAGC < 41bp 1 0.635752429638931 1 0.22372442483902 experiment 0.728495140722139 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604607 chr6:31604591 nonsynonymous SNV 0.983 3 5 hm5C_associated_SNPs_6790 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9555 DeepMRMD:1;iRNA_m5C:0.999536712157815 9556 chr6 31605016 31605016 1 + T C rs35595439 31605013 + 31604993 31605033 41 ACGCCCTTCTTCCCTTAGGTCCTTCTCTGGCCTCAATTCCC ACGCCCTTCTTCCCTTAGGTCCTCCTCTGGCCTCAATTCCC < 41bp 1 0.12812369491945 1 0.0689878463745117 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31605013 chr6:31605016 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_6791 0 0 1 0 2 Ribosome 1 0.500231643918392 1 0.999536712163217 hm5C_site_9556 DeepMRMD:1;iRNA_m5C:0.999536712163217 9557 chr6 31633895 31633895 1 + C T rs568868694 31633885 + 31633865 31633905 41 CTCCCCCCACCCCACTTCGCCTGCCGCGGTCGGGTCCGCGG CTCCCCCCACCCCACTTCGCCTGCCGCGGTTGGGTCCGCGG < 41bp 1 0.407285103501654 1 0.116781622171402 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CSNK2B;GPANK1 ENSG00000204435;ENSG00000204438;ENSG00000263020 UTR5 Human other chr6:31633885 chr6:31633895 . . 0 31 hm5C_associated_SNPs_6792 0 0 1 0 1 unknown 1 0.500231643921109 1 0.999536712157783 hm5C_site_9557 DeepMRMD:1;iRNA_m5C:0.999536712157783 9558 chr6 31633895 31633895 1 + C T rs568868694 31633891 + 31633871 31633911 41 CCACCCCACTTCGCCTGCCGCGGTCGGGTCCGCGGCCTGCG CCACCCCACTTCGCCTGCCGCGGTTGGGTCCGCGGCCTGCG < 41bp 1 0.484241902355127 1 0.220014065504074 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CSNK2B;GPANK1 ENSG00000204435;ENSG00000204438;ENSG00000263020 UTR5 Human other chr6:31633891 chr6:31633895 . . 0 25 hm5C_associated_SNPs_6793 0 0 1 0 1 unknown 1 0.500231643920258 1 0.999536712159484 hm5C_site_9558 DeepMRMD:1;iRNA_m5C:0.999536712159484 9559 chr6 31637190 31637190 1 + G A rs143237802 31637187 + 31637167 31637207 41 AAGTCATCAAGACACCATCACACGGATGGCGCCTACTTCGG AAGTCATCAAGACACCATCACACAGATGGCGCCTACTTCGG < 41bp 1 0.591357582568758 1 0.0221534669399261 experiment 0.817284834862484 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CSNK2B ENSG00000204435;ENSG00000263020 CDS Human other chr6:31637187 chr6:31637190 synonymous SNV . 0 24 hm5C_associated_SNPs_6794 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_9559 DeepMRMD:1;iRNA_m5C:0.999536712157815 9560 chr6 31638970 31638970 1 + C G rs141943810 31638959 + 31638939 31638979 41 TTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGAC TTCCCGACATCCGGACGTGCCACTTCTGCCTGGTAGAAGAC < 41bp 1 0.340212933002915 1 0.0574301481246948 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638959 chr6:31638970 nonsynonymous SNV 0.424 0 32 hm5C_associated_SNPs_6795 0 0 1 0 2 chromatin 1 0.500231644342915 1 0.999536711314169 hm5C_site_9560 DeepMRMD:1;iRNA_m5C:0.999536711314169 9561 chr6 31638970 31638970 1 + C G rs141943810 31638961 + 31638941 31638981 41 CCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGACCC CCCGACATCCGGACGTGCCACTTCTGCCTGGTAGAAGACCC < 41bp 1 0.334872711651821 1 0.0467779934406281 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638961 chr6:31638970 nonsynonymous SNV 0.424 0 30 hm5C_associated_SNPs_6796 0 0 1 0 2 chromatin 1 0.500231686151728 1 0.999536627696544 hm5C_site_9561 DeepMRMD:1;iRNA_m5C:0.999536627696544 9562 chr6 31707829 31707829 1 + T C rs28381345 31707823 + 31707803 31707843 41 CGGTCAGCGGGGCGTTCTCCCACCTGTAGCGACTCAGGTTA CGGTCAGCGGGGCGTTCTCCCACCTGCAGCGACTCAGGTTA < 41bp 1 0.391067804456634 1 0.144110321998596 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MSH5-SAPCD1 ENSG00000204410;ENSG00000255152 UTR5 Human other chr6:31707823 chr6:31707829 . . 0 27 hm5C_associated_SNPs_6797 0 0 1 0 1 exosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_9562 DeepMRMD:1;iRNA_m5C:0.999536712157818 9563 chr6 31708305 31708305 1 + C T rs200570010 31708322 + 31708302 31708342 41 CCTCCTCCGGCTTCCCCAGCCCGGCCCCAGTGCCGGGCCCC CCTTCTCCGGCTTCCCCAGCCCGGCCCCAGTGCCGGGCCCC < 41bp 1 0.288140672967693 1 0.614670157432556 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31708322 chr6:31708305 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_6798 0 0 1 0 2 Cytosol 1 0.50023164622249 0.770659685134888 0.99953670755502 hm5C_site_9563 DeepMRMD:0.770659685134888;iRNA_m5C:0.99953670755502 9564 chr6 31708328 31708328 1 + C T rs2075789 31708322 + 31708302 31708342 41 CCTCCTCCGGCTTCCCCAGCCCGGCCCCAGTGCCGGGCCCC CCTCCTCCGGCTTCCCCAGCCCGGCCTCAGTGCCGGGCCCC < 41bp 1 0.317183438202707 1 0.678473055362701 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31708322 chr6:31708328 nonsynonymous SNV 0.006 1 27 hm5C_associated_SNPs_6799 1 0 1 0 2 Cytosol 1 0.500231643921092 0.643053889274598 0.999536712157815 hm5C_site_9564 DeepMRMD:0.643053889274598;iRNA_m5C:0.999536712157815 not specified not specified 9565 chr6 31795521 31795521 1 + C T rs548638667 31795525 + 31795505 31795545 41 GCGGTCCGGAAAACGGCCAGCCTGAGGAGCTGCTGCGAGGG GCGGTCCGGAAAACGGTCAGCCTGAGGAGCTGCTGCGAGGG < 41bp 1 0.290875324075463 1 0.13013169169426 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HSPA1B ENSG00000204388 UTR5 Human protein_coding chr6:31795525 chr6:31795521 . . 0 17 hm5C_associated_SNPs_6800 0 0 1 0 0 Nucleus 1 0.500231639599509 1 0.999536720800982 hm5C_site_9565 DeepMRMD:1;iRNA_m5C:0.999536720800982 9566 chr6 31795521 31795521 1 + C T rs548638667 31795526 + 31795506 31795546 41 CGGTCCGGAAAACGGCCAGCCTGAGGAGCTGCTGCGAGGGT CGGTCCGGAAAACGGTCAGCCTGAGGAGCTGCTGCGAGGGT < 41bp 1 0.413909252467705 1 0.541800618171692 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HSPA1B ENSG00000204388 UTR5 Human protein_coding chr6:31795526 chr6:31795521 . . 0 16 hm5C_associated_SNPs_6801 0 0 1 0 0 Nucleus 1 0.500231676356412 0.916398763656616 0.999536647287177 hm5C_site_9566 DeepMRMD:0.916398763656616;iRNA_m5C:0.999536647287177 9567 chr6 31795536 31795536 1 + G A rs11576014 31795525 + 31795505 31795545 41 GCGGTCCGGAAAACGGCCAGCCTGAGGAGCTGCTGCGAGGG GCGGTCCGGAAAACGGCCAGCCTGAGGAGCTACTGCGAGGG < 41bp 1 0.240035860878371 1 0.104511708021164 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HSPA1B ENSG00000204388 UTR5 Human protein_coding chr6:31795525 chr6:31795536 . . 0 32 hm5C_associated_SNPs_6802 0 0 1 0 0 Nucleus 1 0.500231643915867 1 0.999536712168265 hm5C_site_9567 DeepMRMD:1;iRNA_m5C:0.999536712168265 9568 chr6 31795536 31795536 1 + G A rs11576014 31795526 + 31795506 31795546 41 CGGTCCGGAAAACGGCCAGCCTGAGGAGCTGCTGCGAGGGT CGGTCCGGAAAACGGCCAGCCTGAGGAGCTACTGCGAGGGT < 41bp 1 0.42103842643861 1 0.482290774583817 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HSPA1B ENSG00000204388 UTR5 Human protein_coding chr6:31795526 chr6:31795536 . . 0 31 hm5C_associated_SNPs_6803 0 0 1 0 0 Nucleus 1 0.500231647557618 1 0.999536704884764 hm5C_site_9568 DeepMRMD:1;iRNA_m5C:0.999536704884764 9569 chr6 31795540 31795540 1 + C G rs368738599 31795525 + 31795505 31795545 41 GCGGTCCGGAAAACGGCCAGCCTGAGGAGCTGCTGCGAGGG GCGGTCCGGAAAACGGCCAGCCTGAGGAGCTGCTGGGAGGG < 41bp 1 0.22574905153115 1 0.118109226226807 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HSPA1B ENSG00000204388 UTR5 Human protein_coding chr6:31795525 chr6:31795540 . . 0 36 hm5C_associated_SNPs_6804 0 0 1 0 0 Nucleus 1 0.500231643919566 1 0.999536712160869 hm5C_site_9569 DeepMRMD:1;iRNA_m5C:0.999536712160869 9570 chr6 31795540 31795540 1 + C G rs368738599 31795526 + 31795506 31795546 41 CGGTCCGGAAAACGGCCAGCCTGAGGAGCTGCTGCGAGGGT CGGTCCGGAAAACGGCCAGCCTGAGGAGCTGCTGGGAGGGT < 41bp 1 0.352742353871983 1 0.440526604652405 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HSPA1B ENSG00000204388 UTR5 Human protein_coding chr6:31795526 chr6:31795540 . . 0 35 hm5C_associated_SNPs_6805 0 0 1 0 0 Nucleus 1 0.500231643923846 1 0.999536712152308 hm5C_site_9570 DeepMRMD:1;iRNA_m5C:0.999536712152308 9571 chr6 31795542 31795542 1 + A G rs553797882 31795525 + 31795505 31795545 41 GCGGTCCGGAAAACGGCCAGCCTGAGGAGCTGCTGCGAGGG GCGGTCCGGAAAACGGCCAGCCTGAGGAGCTGCTGCGGGGG < 41bp 1 0.258469091398752 1 0.215961664915085 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HSPA1B ENSG00000204388 UTR5 Human protein_coding chr6:31795525 chr6:31795542 . . 0 38 hm5C_associated_SNPs_6806 0 0 1 0 0 Nucleus 1 0.50023164393906 1 0.999536712121881 hm5C_site_9571 DeepMRMD:1;iRNA_m5C:0.999536712121881 9572 chr6 31795542 31795542 1 + A G rs553797882 31795526 + 31795506 31795546 41 CGGTCCGGAAAACGGCCAGCCTGAGGAGCTGCTGCGAGGGT CGGTCCGGAAAACGGCCAGCCTGAGGAGCTGCTGCGGGGGT < 41bp 1 0.416926060146031 1 0.563564896583557 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HSPA1B ENSG00000204388 UTR5 Human protein_coding chr6:31795526 chr6:31795542 . . 0 37 hm5C_associated_SNPs_6807 0 0 1 0 0 Nucleus 1 0.500231644145508 0.872870206832886 0.999536711708984 hm5C_site_9572 DeepMRMD:0.872870206832886;iRNA_m5C:0.999536711708984 9573 chr6 31802741 31802741 1 + C G rs17201227 31802742 + 31802722 31802762 41 AGTATGAGAGTTGTAATGGCCCGACTGTTGAGTGAGGGGGA AGTATGAGAGTTGTAATGGGCCGACTGTTGAGTGAGGGGGA < 41bp 1 0.127378259312159 1 0.313608288764954 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C6orf48 ENSG00000204387 UTR5 Human protein_coding chr6:31802742 chr6:31802741 . . 0 20 hm5C_associated_SNPs_6808 0 0 1 0 0 Ribosome 1 0.50023164392485 1 0.9995367121503 hm5C_site_9573 DeepMRMD:1;iRNA_m5C:0.9995367121503 9574 chr6 31802741 31802741 1 + C G rs17201227 31802743 + 31802723 31802763 41 GTATGAGAGTTGTAATGGCCCGACTGTTGAGTGAGGGGGAG GTATGAGAGTTGTAATGGGCCGACTGTTGAGTGAGGGGGAG < 41bp 1 0.323254536258993 1 0.424664914608002 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C6orf48 ENSG00000204387 UTR5 Human protein_coding chr6:31802743 chr6:31802741 . . 0 19 hm5C_associated_SNPs_6809 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9574 DeepMRMD:1;iRNA_m5C:0.999536712157815 9575 chr6 31803074 31803074 1 + C T rs17201241 31803054 + 31803034 31803074 41 GAAGGGAGTGATGATGACCCCAGGTAACTCTTGAGTGTGTC GAAGGGAGTGATGATGACCCCAGGTAACTCTTGAGTGTGTT < 41bp 1 0.498854470127082 1 0.551426887512207 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD48 ENSG00000201823 ncRNA_exonic Human snoRNA chr6:31803054 chr6:31803074 . . 0 41 hm5C_associated_SNPs_6810 0 0 1 0 0 unknown 1 0.500231643819345 0.897146224975586 0.999536712361309 hm5C_site_9575 DeepMRMD:0.897146224975586;iRNA_m5C:0.999536712361309 9576 chr6 31803074 31803074 1 + C T rs17201241 31803061 + 31803041 31803081 41 GTGATGATGACCCCAGGTAACTCTTGAGTGTGTCGCTGATG GTGATGATGACCCCAGGTAACTCTTGAGTGTGTTGCTGATG < 41bp 1 0.297116595041407 1 0.0881207287311554 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD48 ENSG00000201823 ncRNA_exonic Human snoRNA chr6:31803061 chr6:31803074 . . 0 34 hm5C_associated_SNPs_6811 0 0 1 0 0 unknown 1 0.500231284899399 1 0.999537430201202 hm5C_site_9576 DeepMRMD:1;iRNA_m5C:0.999537430201202 9577 chr6 31803074 31803074 1 + C T rs17201241 31803076 + 31803056 31803096 41 GGTAACTCTTGAGTGTGTCGCTGATGCCATCACCGCAGCGC GGTAACTCTTGAGTGTGTTGCTGATGCCATCACCGCAGCGC < 41bp 1 0.424491871350322 1 0.238824635744095 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD48 ENSG00000201823 ncRNA_exonic Human snoRNA chr6:31803076 chr6:31803074 . . 0 19 hm5C_associated_SNPs_6812 0 0 1 0 0 unknown 1 0.500231659280237 1 0.999536681439526 hm5C_site_9577 DeepMRMD:1;iRNA_m5C:0.999536681439526 9578 chr6 31803074 31803074 1 + C T rs17201241 31803082 + 31803062 31803102 41 TCTTGAGTGTGTCGCTGATGCCATCACCGCAGCGCTCTGAC TCTTGAGTGTGTTGCTGATGCCATCACCGCAGCGCTCTGAC < 41bp 1 0.0803170736727187 1 0.0578368902206421 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD48 ENSG00000201823 ncRNA_exonic Human snoRNA chr6:31803082 chr6:31803074 . . 0 13 hm5C_associated_SNPs_6813 0 0 1 0 0 unknown 1 0.500249956902273 1 0.999500086195454 hm5C_site_9578 DeepMRMD:1;iRNA_m5C:0.999500086195454 9579 chr6 31803074 31803074 1 + C T rs17201241 31803083 + 31803063 31803103 41 CTTGAGTGTGTCGCTGATGCCATCACCGCAGCGCTCTGACC CTTGAGTGTGTTGCTGATGCCATCACCGCAGCGCTCTGACC < 41bp 1 0.414758224512589 1 0.146639913320541 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD48 ENSG00000201823 ncRNA_exonic Human snoRNA chr6:31803083 chr6:31803074 . . 0 12 hm5C_associated_SNPs_6814 0 0 1 0 0 unknown 1 0.500231615547232 1 0.999536768905535 hm5C_site_9579 DeepMRMD:1;iRNA_m5C:0.999536768905535 9580 chr6 31803074 31803074 1 + C T rs17201241 31803086 + 31803066 31803106 41 GAGTGTGTCGCTGATGCCATCACCGCAGCGCTCTGACCGCC GAGTGTGTTGCTGATGCCATCACCGCAGCGCTCTGACCGCC < 41bp 1 0.628347804306566 1 0.7578946352005 experiment 0.743304391386868 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD48 ENSG00000201823 ncRNA_exonic Human snoRNA chr6:31803086 chr6:31803074 . . 0 9 hm5C_associated_SNPs_6815 0 0 1 0 0 unknown 1 0.500232159800062 0.484210729599 0.999535680399876 hm5C_site_9580 DeepMRMD:0.484210729599;iRNA_m5C:0.999535680399876 9581 chr6 31803074 31803074 1 + C T rs17201241 31803089 + 31803069 31803109 41 TGTGTCGCTGATGCCATCACCGCAGCGCTCTGACCGCCCCC TGTGTTGCTGATGCCATCACCGCAGCGCTCTGACCGCCCCC < 41bp 1 0.559160325863982 1 0.824183583259583 experiment 0.881679348272036 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD48 ENSG00000201823 ncRNA_exonic Human snoRNA chr6:31803089 chr6:31803074 . . 0 6 hm5C_associated_SNPs_6817 0 0 1 0 0 unknown 1 0.500231643752633 0.351632833480834 0.999536712494735 hm5C_site_9581 DeepMRMD:0.351632833480834;iRNA_m5C:0.999536712494735 9582 chr6 31803074 31803074 1 + C T rs17201241 31803094 + 31803074 31803114 41 CGCTGATGCCATCACCGCAGCGCTCTGACCGCCCCCTCGGT TGCTGATGCCATCACCGCAGCGCTCTGACCGCCCCCTCGGT < 41bp 1 0.109965505542785 1 0.0617561042308807 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD48 ENSG00000201823 ncRNA_exonic Human snoRNA chr6:31803094 chr6:31803074 . . 0 1 hm5C_associated_SNPs_6819 0 0 1 0 0 unknown 1 0.500231644386136 1 0.999536711227728 hm5C_site_9582 DeepMRMD:1;iRNA_m5C:0.999536711227728 9583 chr6 31868828 31868828 1 + G C rs376539476 31868814 - 31868794 31868834 41 CTTGCTCCTCTCCTGCTACACGGGCGCCTTGGAATTCGCTG CTTGCTGCTCTCCTGCTACACGGGCGCCTTGGAATTCGCTG < 41bp 1 0.496840919645103 1 0.758299708366394 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB12 ENSG00000204366 CDS Human protein_coding chr6:31868814 chr6:31868828 synonymous SNV . 0 7 hm5C_associated_SNPs_6820 0 0 1 0 0 exosome 1 0.500231643922697 0.483400583267212 0.999536712154606 hm5C_site_9583 DeepMRMD:0.483400583267212;iRNA_m5C:0.999536712154606 9584 chr6 31912773 31912773 1 + A G rs45507391 31912772 + 31912752 31912792 41 GGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT GGCAGGAGAATCTGGGGGAGCGGTTTTCCTTGAGCGGAGAT < 41bp 1 0.199837208117081 1 0.327765703201294 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2 ENSG00000166278 CDS Human protein_coding chr6:31912772 chr6:31912773 synonymous SNV . 0 22 hm5C_associated_SNPs_6821 3 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_9584 DeepMRMD:1;iRNA_m5C:0.999536712157815 Macular degeneration Macular degeneration 9585 chr6 31926721 31926721 1 + C G rs546698443 31926733 - 31926713 31926753 41 GCTACGTCATCGTTGTGAGCCCGCTATCAGCGGCCAGCGCG GCTACGTCATCGTTGTGAGCCCGCTATCAGCGCCCAGCGCG < 41bp 1 0.461854194536654 1 0.424241840839386 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NELFE;SKIV2L ENSG00000204356 UTR5 Human protein_coding chr6:31926733 chr6:31926721 . . 0 33 hm5C_associated_SNPs_6824 1 0 1 0 1 unknown 1 0.500231642781113 1 0.999536714437773 hm5C_site_9585 DeepMRMD:1;iRNA_m5C:0.999536714437773 Trichohepatoenteric syndrome Trichohepatoenteric syndrome 9586 chr6 31926977 31926977 1 + A C rs557492102 31926985 + 31926965 31927005 41 CCAGGATGATGGAGACAGAGCGACTTGGTGAGGGGGAGGGG CCAGGATGATGGCGACAGAGCGACTTGGTGAGGGGGAGGGG < 41bp 1 0.349265585822642 1 0.28298020362854 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31926985 chr6:31926977 nonsynonymous SNV 0.859 1 13 hm5C_associated_SNPs_6825 0 0 1 0 1 chromatin 1 0.500231643921043 1 0.999536712157914 hm5C_site_9586 DeepMRMD:1;iRNA_m5C:0.999536712157914 9587 chr6 31928238 31928238 1 + T C rs3895064 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTCGGCCACAACCTCCTTG < 41bp 1 0.365445051989728 1 0.103994101285934 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928238 synonymous SNV . 0 29 hm5C_associated_SNPs_6826 1 0 0 0 2 chromatin 1 0.50023154269877 1 0.999536914602461 hm5C_site_9587 DeepMRMD:1;iRNA_m5C:0.999536914602461 Trichohepatoenteric syndrome Trichohepatoenteric syndrome 9588 chr6 31929808 31929808 1 + C T rs35664695 31929807 + 31929787 31929827 41 TGTGGCTGAATATGCCATTGCCCTGGCCCAGAAACACATGA TGTGGCTGAATATGCCATTGCTCTGGCCCAGAAACACATGA < 41bp 1 0.341149938907973 1 0.217230796813965 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929807 chr6:31929808 synonymous SNV . 0 22 hm5C_associated_SNPs_6827 1 1 0 0 1 chromatin 1 0.500231643923891 1 0.999536712152217 hm5C_site_9588 DeepMRMD:1;iRNA_m5C:0.999536712152217 Trichohepatoenteric syndrome Trichohepatoenteric syndrome 9589 chr6 31936126 31936126 1 + C A rs146035089 31936137 + 31936117 31936157 41 CCTTGCAGCCGTGACCACTGCTGTCCAGGAACTGCTGCGTC CCTTGCAGCAGTGACCACTGCTGTCCAGGAACTGCTGCGTC < 41bp 1 0.243294591593092 1 0.163146138191223 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31936137 chr6:31936126 synonymous SNV . 0 10 hm5C_associated_SNPs_6828 0 0 1 0 1 chromatin 1 0.500231644432344 1 0.999536711135312 hm5C_site_9589 DeepMRMD:1;iRNA_m5C:0.999536711135312 9590 chr6 31936668 31936668 1 + T C rs410851 31936653 + 31936633 31936673 41 CCCTTTTTCTTGCAGGTGCTCCGAACCCTGGGTTATGTGGA CCCTTTTTCTTGCAGGTGCTCCGAACCCTGGGTTACGTGGA < 41bp 1 0.346458690556499 1 0.749715566635132 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31936653 chr6:31936668 synonymous SNV . 0 36 hm5C_associated_SNPs_6829 2 0 1 0 1 chromatin 1 0.500231643921092 0.500568866729736 0.999536712157815 hm5C_site_9590 DeepMRMD:0.500568866729736;iRNA_m5C:0.999536712157815 Trichohepatoenteric syndrome Trichohepatoenteric syndrome 9591 chr6 31964655 31964655 1 + G A rs5030681 31964669 + 31964649 31964689 41 CGTGTCGCCCACCCCGGCTCCTCGCAACCCATCCGACCCCA CGTGTCACCCACCCCGGCTCCTCGCAACCCATCCGACCCCA < 41bp 1 0.417832808987712 1 0.188887298107147 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C4A;C4B;C4B_2 ENSG00000244731 CDS Human protein_coding chr6:31964669 chr6:31964655 synonymous SNV . 0 7 hm5C_associated_SNPs_6830 0 0 0 0 1 unknown 1 0.500231579139704 1 0.999536841720592 hm5C_site_9591 DeepMRMD:1;iRNA_m5C:0.999536841720592 9592 chr6 31964663 31964663 1 + C T rs533662784 31964669 + 31964649 31964689 41 CGTGTCGCCCACCCCGGCTCCTCGCAACCCATCCGACCCCA CGTGTCGCCCACCCTGGCTCCTCGCAACCCATCCGACCCCA < 41bp 1 0.404701154042378 1 0.24610099196434 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C4A;C4B;C4B_2 ENSG00000244731 CDS Human protein_coding chr6:31964669 chr6:31964663 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_6831 0 0 0 0 1 unknown 1 0.50023143900933 1 0.999537121981339 hm5C_site_9592 DeepMRMD:1;iRNA_m5C:0.999537121981339 9593 chr6 32148277 32148277 1 + G C rs181176444 32148264 + 32148244 32148284 41 CTGGGGAGGAGGAGTGAAGTCTGTGCATAGATGGGAGAGCC CTGGGGAGGAGGAGTGAAGTCTGTGCATAGATGCGAGAGCC < 41bp 1 0.440461379151181 1 0.717050671577454 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF5P1 ENSG00000204308 UTR3 Human protein_coding chr6:32148264 chr6:32148277 . . 0 34 hm5C_associated_SNPs_6833 0 0 0 0 0 unknown 1 0.500231643921177 0.565898656845092 0.999536712157646 hm5C_site_9593 DeepMRMD:0.565898656845092;iRNA_m5C:0.999536712157646 9594 chr6 32942264 32942264 1 + T C rs3752528 32942278 + 32942258 32942298 41 GCAGGGTTGCTGGGGCTGGGCCCAGAAGCAGCAGCACCAGG GCAGGGCTGCTGGGGCTGGGCCCAGAAGCAGCAGCACCAGG < 41bp 1 0.534085681558252 1 0.273379266262054 experiment 0.931828636883496 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32942278 chr6:32942264 synonymous SNV . 0 7 hm5C_associated_SNPs_6834 0 0 1 0 1 Cytosol 1 0.500231643922874 1 0.999536712154252 hm5C_site_9594 DeepMRMD:1;iRNA_m5C:0.999536712154252 9595 chr6 32942277 32942277 1 + G A rs55650502 32942278 + 32942258 32942298 41 GCAGGGTTGCTGGGGCTGGGCCCAGAAGCAGCAGCACCAGG GCAGGGTTGCTGGGGCTGGACCCAGAAGCAGCAGCACCAGG < 41bp 1 0.532219897811247 1 0.322850465774536 experiment 0.935560204377506 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32942278 chr6:32942277 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_6835 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_9595 DeepMRMD:1;iRNA_m5C:0.999536712157815 9596 chr6 32946942 32946942 1 + C T rs539005700 32946948 + 32946928 32946968 41 AAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCCAGGATTA AAGCGATTCTCCTGTCTCAGCCTCCCAAGTAGCCAGGATTA < 41bp 1 0.0404448681572178 1 0.139284193515778 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32946948 chr6:32946942 synonymous SNV . 0 15 hm5C_associated_SNPs_6836 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9596 DeepMRMD:1;iRNA_m5C:0.999536712157815 9597 chr6 32946964 32946964 1 + G A rs206778 32946948 + 32946928 32946968 41 AAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCCAGGATTA AAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCCAGAATTA < 41bp 1 0.0396255621024722 1 0.139070630073547 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32946948 chr6:32946964 nonsynonymous SNV 0.007 0 37 hm5C_associated_SNPs_6837 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9597 DeepMRMD:1;iRNA_m5C:0.999536712157815 9598 chr6 33169571 33169571 1 + T C rs137873161 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTCTCCCTTATCCCCGTGGA < 41bp 1 0.115219186088107 1 0.0913550853729248 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169571 nonsynonymous SNV 0.998 2 26 hm5C_associated_SNPs_6838 0 0 1 0 2 Ribosome 1 0.500231643925088 1 0.999536712149824 hm5C_site_9598 DeepMRMD:1;iRNA_m5C:0.999536712149824 9599 chr6 33169581 33169581 1 + C G rs11538810 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCGGTGGA < 41bp 1 0.133614984667487 1 0.0355851948261261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169581 synonymous SNV . 0 36 hm5C_associated_SNPs_6839 0 0 1 0 2 Ribosome 1 0.500231643942765 1 0.999536712114471 hm5C_site_9599 DeepMRMD:1;iRNA_m5C:0.999536712114471 9600 chr6 33171854 33171854 1 + C G rs116902687 33171842 + 33171822 33171862 41 ATTTGGAAGGCTAAATGGGGCCATGAAGAAGGCTGGAAGGG ATTTGGAAGGCTAAATGGGGCCATGAAGAAGGGTGGAAGGG < 41bp 1 0.214846893050937 1 0.264466285705566 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SLC39A7 ENSG00000112473 UTR3 Human protein_coding chr6:33171842 chr6:33171854 . . 0 33 hm5C_associated_SNPs_6840 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9600 DeepMRMD:1;iRNA_m5C:0.999536712157815 9601 chr6 33172442 33172442 1 + C A rs150495100 33172450 + 33172430 33172470 41 CCACCCACAGCCCGCCATGGCGTCTCAGCTCCAGAACCGAC CCACCCACAGCCAGCCATGGCGTCTCAGCTCCAGAACCGAC < 41bp 1 0.114683911170491 1 0.149989664554596 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSD17B8 ENSG00000204228 UTR5 Human protein_coding chr6:33172450 chr6:33172442 . . 0 13 hm5C_associated_SNPs_6841 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_9601 DeepMRMD:1;iRNA_m5C:0.999536712157817 9602 chr6 33239869 33239869 1 + C A rs17215231 33239873 + 33239853 33239893 41 TCTCTTCCACAGGAGGCCTACACGCCGCCGCTTGTGCTGCA TCTCTTCCACAGGAGGACTACACGCCGCCGCTTGTGCTGCA < 41bp 1 0.422434806988923 1 0.299492388963699 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS18 ENSG00000231500 UTR5 Human protein_coding chr6:33239873 chr6:33239869 . . 0 17 hm5C_associated_SNPs_6842 0 0 1 0 1 Cytosol 1 0.49973987261058 1 1 hm5C_site_9602 DeepMRMD:1;iRNA_m5C:1 9603 chr6 33239892 33239892 1 + C T rs550306811 33239873 + 33239853 33239893 41 TCTCTTCCACAGGAGGCCTACACGCCGCCGCTTGTGCTGCA TCTCTTCCACAGGAGGCCTACACGCCGCCGCTTGTGCTGTA < 41bp 1 0.388694948181505 1 0.351282149553299 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS18 ENSG00000231500 UTR5 Human protein_coding chr6:33239873 chr6:33239892 . . 0 40 hm5C_associated_SNPs_6843 0 0 1 0 1 Cytosol 1 0.500231578422818 1 0.999536843154364 hm5C_site_9603 DeepMRMD:1;iRNA_m5C:0.999536843154364 9604 chr6 33258619 33258619 1 + C A rs743946 33258608 + 33258588 33258628 41 AGGCAGCAAAGGCAGGGGCTCCTGGCAAGGCCTGACCCCAT AGGCAGCAAAGGCAGGGGCTCCTGGCAAGGCATGACCCCAT < 41bp 1 0.682547208513518 1 0.347821772098541 experiment 0.634905582972965 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PFDN6 ENSG00000204220 CDS Human protein_coding chr6:33258608 chr6:33258619 synonymous SNV . 0 32 hm5C_associated_SNPs_6844 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9604 DeepMRMD:1;iRNA_m5C:0.999536712157815 9605 chr6 33411299 33411299 1 + C T rs61421477 33411295 + 33411275 33411315 41 TAGCAAGAGTGAGGACCTCTCTTCCGGGGTCCCCAAGCCCC TAGCAAGAGTGAGGACCTCTCTTCTGGGGTCCCCAAGCCCC < 41bp 1 0.252867424448495 1 0.249261260032654 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33411295 chr6:33411299 synonymous SNV . 0 25 hm5C_associated_SNPs_6845 2 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_9605 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 9606 chr6 33638138 33638138 1 + C A rs2229633 33638147 + 33638127 33638167 41 ATGTGCTTGGACCGCCAGTACTTGGCCATCGACGAGATCTC ATGTGCTTGGAACGCCAGTACTTGGCCATCGACGAGATCTC < 41bp 1 0.270942851545004 1 0.235840439796448 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33638147 chr6:33638138 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_6846 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920857 1 0.999536712158287 hm5C_site_9606 DeepMRMD:1;iRNA_m5C:0.999536712158287 9607 chr6 33656548 33656548 1 + C T rs142850920 33656530 + 33656510 33656550 41 AACATCATCATTGCCTTCTTCTACCCTTACATGGAGGGCGC AACATCATCATTGCCTTCTTCTACCCTTACATGGAGGGTGC < 41bp 1 0.108012614914791 1 0.227627515792847 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33656530 chr6:33656548 synonymous SNV . 0 39 hm5C_associated_SNPs_6847 0 0 1 0 1 Endoplasmic reticulum 1 0.500231829357347 1 0.999536341285307 hm5C_site_9607 DeepMRMD:1;iRNA_m5C:0.999536341285307 9608 chr6 34213219 34213219 1 + T G rs372041536 34213236 + 34213216 34213256 41 CTTTGTCACCACGTGGGGCTCACTTTTCATCCTTCCCCAAC CTTGGTCACCACGTGGGGCTCACTTTTCATCCTTCCCCAAC < 41bp 1 0.53122324424242 1 0.0139484405517578 experiment 0.937553511515161 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HMGA1 ENSG00000137309 CDS Human protein_coding chr6:34213236 chr6:34213219 nonsynonymous SNV . 0 4 hm5C_associated_SNPs_6848 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9608 DeepMRMD:1;iRNA_m5C:0.999536712157815 9609 chr6 34213250 34213250 1 + C G rs111748592 34213236 + 34213216 34213256 41 CTTTGTCACCACGTGGGGCTCACTTTTCATCCTTCCCCAAC CTTTGTCACCACGTGGGGCTCACTTTTCATCCTTGCCCAAC < 41bp 1 0.513407960357356 1 0.0162706077098846 experiment 0.973184079285287 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HMGA1 ENSG00000137309 CDS Human protein_coding chr6:34213236 chr6:34213250 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_6849 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9609 DeepMRMD:1;iRNA_m5C:0.999536712157815 9610 chr6 34213497 34213497 1 + C T rs537322378 34213510 + 34213490 34213530 41 CGCCACTCAGCCATTTCCCCCTCCTCAGATGGGGCACCAAT CGCCACTTAGCCATTTCCCCCTCCTCAGATGGGGCACCAAT < 41bp 1 0.309242427402104 1 0.693559408187866 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HMGA1 ENSG00000137309 UTR3 Human protein_coding chr6:34213510 chr6:34213497 . . 0 8 hm5C_associated_SNPs_6850 0 0 1 1 0 Cytosol 1 0.500231643921092 0.612881183624268 0.999536712157815 hm5C_site_9610 DeepMRMD:0.612881183624268;iRNA_m5C:0.999536712157815 9611 chr6 34213675 34213675 1 + G A rs149013137 34213674 + 34213654 34213694 41 ATGTTCCATTCTTCGACATCCGTCATTGCTGCTGCTACCAG ATGTTCCATTCTTCGACATCCATCATTGCTGCTGCTACCAG < 41bp 1 0.47627572109144 1 0.42156994342804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HMGA1 ENSG00000137309 UTR3 Human protein_coding chr6:34213674 chr6:34213675 . . 0 22 hm5C_associated_SNPs_6851 0 0 1 6 0 Cytosol 1 0.50023164695655 1 0.9995367060869 hm5C_site_9611 DeepMRMD:1;iRNA_m5C:0.9995367060869 9612 chr6 35058052 35058052 1 + G A rs74826129 35058038 + 35058018 35058058 41 GCCCATGAGCTACCGCTGTACAGTTCTCGGCCCCGGCTTTC GCCCATGAGCTACCGCTGTACAGTTCTCGGCCCCAGCTTTC < 41bp 1 0.148596767526505 1 0.0675880014896393 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKS1A ENSG00000064999 UTR3 Human protein_coding chr6:35058038 chr6:35058052 . . 0 35 hm5C_associated_SNPs_6853 0 0 1 0 0 Cytosol 1 0.500231643921006 1 0.999536712157989 hm5C_site_9612 DeepMRMD:1;iRNA_m5C:0.999536712157989 9613 chr6 35392267 35392267 1 + C T rs9658163 35392256 + 35392236 35392276 41 CAGTGGAGACCGTGCGGGAGCTCACTGAGTTCGCCAAGAGC CAGTGGAGACCGTGCGGGAGCTCACTGAGTTTGCCAAGAGC < 41bp 1 0.265450049165289 1 0.129073053598404 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPARD ENSG00000112033 CDS Human protein_coding chr6:35392256 chr6:35392267 synonymous SNV . 0 32 hm5C_associated_SNPs_6854 0 0 1 0 0 Cytosol 1 0.500231643922263 1 0.999536712155474 hm5C_site_9613 DeepMRMD:1;iRNA_m5C:0.999536712155474 9614 chr6 35392267 35392267 1 + C T rs9658163 35392258 + 35392238 35392278 41 GTGGAGACCGTGCGGGAGCTCACTGAGTTCGCCAAGAGCAT GTGGAGACCGTGCGGGAGCTCACTGAGTTTGCCAAGAGCAT < 41bp 1 0.429179630420647 1 0.148059666156769 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPARD ENSG00000112033 CDS Human protein_coding chr6:35392258 chr6:35392267 synonymous SNV . 0 30 hm5C_associated_SNPs_6855 0 0 1 0 0 Cytosol 1 0.500231979957901 1 0.999536040084199 hm5C_site_9614 DeepMRMD:1;iRNA_m5C:0.999536040084199 9615 chr6 35394671 35394671 1 + G A rs9658173 35394682 + 35394662 35394702 41 GCACTGGCCGCTGGACGGCACTCTCCCAGCTTGGAAGTAGG GCACTGGCCACTGGACGGCACTCTCCCAGCTTGGAAGTAGG < 41bp 1 0.0684062022487425 1 0.0880369544029236 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPARD ENSG00000112033 UTR3 Human protein_coding chr6:35394682 chr6:35394671 . . 0 10 hm5C_associated_SNPs_6856 0 0 1 0 0 Cytosol 1 0.500231644154078 1 0.999536711691845 hm5C_site_9615 DeepMRMD:1;iRNA_m5C:0.999536711691845 9616 chr6 35420267 35420267 1 + C T rs4713866 35420260 + 35420240 35420280 41 GCGCTGGAGTCCTCCGTTCCCCTCAGCCTCTGAGCTGAGGC GCGCTGGAGTCCTCCGTTCCCCTCAGCTTCTGAGCTGAGGC < 41bp 1 0.410131285196816 1 0.318694412708282 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCE ENSG00000112039 UTR5 Human protein_coding chr6:35420260 chr6:35420267 . . 0 28 hm5C_associated_SNPs_6858 1 0 0 0 0 Ribosome 1 0.50023164738863 1 0.999536705222741 hm5C_site_9616 DeepMRMD:1;iRNA_m5C:0.999536705222741 Fanconi anemia Fanconi anemia 9617 chr6 35436183 35436183 1 + C T rs368308609 35436189 + 35436169 35436209 41 AGACATGCTAGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAG AGACATGCTAGTCTTTTTTCCGGTTAGCGCGGCGTGAGAAG < 41bp 1 0.290182796508349 1 0.403675198554993 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10A ENSG00000198755 upstream Human protein_coding chr6:35436189 chr6:35436183 . . 0 15 hm5C_associated_SNPs_6859 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9617 DeepMRMD:1;iRNA_m5C:0.999536712157815 9618 chr6 35436183 35436183 1 + C T rs368308609 35436201 + 35436181 35436221 41 CTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG CTTTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG < 41bp 1 0.422065246100244 1 0.469292223453522 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 upstream Human protein_coding chr6:35436201 chr6:35436183 . . 0 3 hm5C_associated_SNPs_6861 0 0 1 0 1 Cytosol 1 0.500231643921095 1 0.999536712157811 hm5C_site_9618 DeepMRMD:1;iRNA_m5C:0.999536712157811 9619 chr6 35436195 35436195 1 + G A rs41271257 35436189 + 35436169 35436209 41 AGACATGCTAGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAG AGACATGCTAGTCTCTTTTCCGGTTAACGCGGCGTGAGAAG < 41bp 1 0.298844737930685 1 0.766702115535736 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436189 chr6:35436195 . . 0 27 hm5C_associated_SNPs_6862 0 0 1 0 1 Cytosol 1 0.500231643921092 0.466595768928528 0.999536712157815 hm5C_site_9619 DeepMRMD:0.466595768928528;iRNA_m5C:0.999536712157815 9620 chr6 35436195 35436195 1 + G A rs41271257 35436201 + 35436181 35436221 41 CTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG CTCTTTTCCGGTTAACGCGGCGTGAGAAGCCATGAGGTGAG < 41bp 1 0.366694732062277 1 0.479546368122101 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436201 chr6:35436195 . . 0 15 hm5C_associated_SNPs_6864 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_9620 DeepMRMD:1;iRNA_m5C:0.999536712157814 9621 chr6 35436196 35436196 1 + C T rs373878090 35436189 + 35436169 35436209 41 AGACATGCTAGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAG AGACATGCTAGTCTCTTTTCCGGTTAGTGCGGCGTGAGAAG < 41bp 1 0.274539557563713 1 0.624691963195801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436189 chr6:35436196 . . 0 28 hm5C_associated_SNPs_6865 0 0 1 0 1 Cytosol 1 0.500231643921092 0.750616073608398 0.999536712157815 hm5C_site_9621 DeepMRMD:0.750616073608398;iRNA_m5C:0.999536712157815 9622 chr6 35436196 35436196 1 + C T rs373878090 35436201 + 35436181 35436221 41 CTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG CTCTTTTCCGGTTAGTGCGGCGTGAGAAGCCATGAGGTGAG < 41bp 1 0.396325033131583 1 0.501543164253235 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436201 chr6:35436196 . . 0 16 hm5C_associated_SNPs_6867 0 0 1 0 1 Cytosol 1 0.500231643921093 0.99691367149353 0.999536712157814 hm5C_site_9622 DeepMRMD:0.99691367149353;iRNA_m5C:0.999536712157814 9623 chr6 36570649 36570649 1 + T C rs556558848 36570640 + 36570620 36570660 41 TATAACATTCCTATTGGAAGCCATACTTATATTTTCTTGTA TATAACATTCCTATTGGAAGCCATACTTACATTTTCTTGTA < 41bp 1 0.182255616331588 1 0.283778578042984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRSF3 ENSG00000112081 UTR3 Human protein_coding chr6:36570640 chr6:36570649 . . 0 30 hm5C_associated_SNPs_6868 0 0 1 0 0 Ribosome 1 0.500231645027266 1 0.999536709945469 hm5C_site_9623 DeepMRMD:1;iRNA_m5C:0.999536709945469 9624 chr6 37280744 37280744 1 + C A rs116200452 37280749 + 37280729 37280769 41 TCTCAAGACATGCTGCGAAGCATTGAGGCTGACAGCTTTTG TCTCAAGACATGCTGAGAAGCATTGAGGCTGACAGCTTTTG < 41bp 1 0.178009173827122 1 0.0697490274906158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37280749 chr6:37280744 synonymous SNV . 0 16 hm5C_associated_SNPs_6869 0 0 1 0 2 chromatin 1 0.500231416039678 1 0.999537167920644 hm5C_site_9624 DeepMRMD:1;iRNA_m5C:0.999537167920644 9625 chr6 37787623 37787623 1 + C T rs182727321 37787627 + 37787607 37787647 41 CCCCCTCCCCCCGCCCCGAGCCCCCCGACGCCGCCGCCACC CCCCCTCCCCCCGCCCTGAGCCCCCCGACGCCGCCGCCACC < 41bp 1 0.493328080170341 1 0.0415627062320709 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFAND3 ENSG00000156639 UTR5 Human protein_coding chr6:37787627 chr6:37787623 . . 0 17 hm5C_associated_SNPs_6870 0 0 1 0 0 Cytosol 1 0.500231643917448 1 0.999536712165104 hm5C_site_9625 DeepMRMD:1;iRNA_m5C:0.999536712165104 9626 chr6 37787623 37787623 1 + C T rs182727321 37787637 + 37787617 37787657 41 CCGCCCCGAGCCCCCCGACGCCGCCGCCACCGCCTCCTCAG CCGCCCTGAGCCCCCCGACGCCGCCGCCACCGCCTCCTCAG < 41bp 1 0.630831880723285 1 0.148084342479706 experiment 0.738336238553429 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZFAND3 ENSG00000156639 UTR5 Human protein_coding chr6:37787637 chr6:37787623 . . 0 7 hm5C_associated_SNPs_6871 0 0 1 0 0 Cytosol 1 0.500231643865193 1 0.999536712269615 hm5C_site_9626 DeepMRMD:1;iRNA_m5C:0.999536712269615 9627 chr6 37787640 37787640 1 + C G rs539970158 37787627 + 37787607 37787647 41 CCCCCTCCCCCCGCCCCGAGCCCCCCGACGCCGCCGCCACC CCCCCTCCCCCCGCCCCGAGCCCCCCGACGCCGGCGCCACC < 41bp 1 0.452641623959341 1 0.056162565946579 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFAND3 ENSG00000156639 UTR5 Human protein_coding chr6:37787627 chr6:37787640 . . 0 34 hm5C_associated_SNPs_6873 0 0 1 0 0 Cytosol 1 0.500224101741621 1 0.999551796516759 hm5C_site_9627 DeepMRMD:1;iRNA_m5C:0.999551796516759 9628 chr6 41567627 41567627 1 + C T rs73733287 41567645 + 41567625 41567665 41 CCCGCCTCTCCCCCCGCCGCCCCACCAGTTAAACGGATGAC CCTGCCTCTCCCCCCGCCGCCCCACCAGTTAAACGGATGAC < 41bp 1 0.0239563499045941 1 0.242911219596863 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOXP4 ENSG00000137166 UTR3 Human protein_coding chr6:41567645 chr6:41567627 . . 0 3 hm5C_associated_SNPs_6876 0 0 1 0 0 Nucleus 1 0.500231643922489 1 0.999536712155021 hm5C_site_9628 DeepMRMD:1;iRNA_m5C:0.999536712155021 9629 chr6 41755412 41755412 1 + G C rs76995785 41755410 + 41755390 41755430 41 ACGCCGATACGGTTCCTCCACCGAGGCCCATGCGAAGCTTT ACGCCGATACGGTTCCTCCACCCAGGCCCATGCGAAGCTTT < 41bp 1 0.267274504890123 1 0.0518769025802612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOMM6 ENSG00000214736;ENSG00000124593 UTR5;UTR3 Human other chr6:41755410 chr6:41755412 . . 0 23 hm5C_associated_SNPs_6877 0 0 1 0 0 chromatin 1 0.500231644175346 1 0.999536711649309 hm5C_site_9629 DeepMRMD:1;iRNA_m5C:0.999536711649309 9630 chr6 42045733 42045733 1 + A T rs571053501 42045717 + 42045697 42045737 41 TTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCA TTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGTTCCA < 41bp 1 0.481046288404426 1 0.0432450175285339 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TAF8 ENSG00000137413 UTR3 Human protein_coding chr6:42045717 chr6:42045733 . . 0 37 hm5C_associated_SNPs_6878 0 0 0 0 0 Nucleus 1 0.500231638200672 1 0.999536723598655 hm5C_site_9630 DeepMRMD:1;iRNA_m5C:0.999536723598655 9631 chr6 42045733 42045733 1 + A T rs571053501 42045719 + 42045699 42045739 41 GGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACC GGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGTTCCACC < 41bp 1 0.397253697430764 1 0.553112268447876 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control TAF8 ENSG00000137413 UTR3 Human protein_coding chr6:42045719 chr6:42045733 . . 0 35 hm5C_associated_SNPs_6879 0 0 0 0 0 Nucleus 1 0.500231643892491 0.893775463104248 0.999536712215018 hm5C_site_9631 DeepMRMD:0.893775463104248;iRNA_m5C:0.999536712215018 9632 chr6 42045733 42045733 1 + A T rs571053501 42045720 + 42045700 42045740 41 GCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCC GCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGTTCCACCC < 41bp 1 0.363934529364131 1 0.555423200130463 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control TAF8 ENSG00000137413 UTR3 Human protein_coding chr6:42045720 chr6:42045733 . . 0 34 hm5C_associated_SNPs_6880 0 0 0 0 0 Nucleus 1 0.500231644077782 0.889153599739074 0.999536711844436 hm5C_site_9632 DeepMRMD:0.889153599739074;iRNA_m5C:0.999536711844436 9633 chr6 42045733 42045733 1 + A T rs571053501 42045724 + 42045704 42045744 41 GGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCCGCAT GGCTGGTCTTGAACTCCTGACCTCAAGTGTTCCACCCGCAT < 41bp 1 0.112890534330243 1 0.0408431887626648 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control TAF8 ENSG00000137413 UTR3 Human protein_coding chr6:42045724 chr6:42045733 . . 0 30 hm5C_associated_SNPs_6881 0 0 0 0 0 Nucleus 1 0.500231643993213 1 0.999536712013575 hm5C_site_9633 DeepMRMD:1;iRNA_m5C:0.999536712013575 9634 chr6 42045733 42045733 1 + A T rs571053501 42045725 + 42045705 42045745 41 GCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCCGCATT GCTGGTCTTGAACTCCTGACCTCAAGTGTTCCACCCGCATT < 41bp 1 0.694479685145912 1 0.561185002326965 experiment 0.611040629708177 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control TAF8 ENSG00000137413 UTR3 Human protein_coding chr6:42045725 chr6:42045733 . . 0 29 hm5C_associated_SNPs_6882 0 0 0 0 0 Nucleus 1 0.50022703525497 0.87762999534607 0.99954592949006 hm5C_site_9634 DeepMRMD:0.87762999534607;iRNA_m5C:0.99954592949006 9635 chr6 42045733 42045733 1 + A T rs571053501 42045727 + 42045707 42045747 41 TGGTCTTGAACTCCTGACCTCAAGTGATCCACCCGCATTGG TGGTCTTGAACTCCTGACCTCAAGTGTTCCACCCGCATTGG < 41bp 1 0.594801795529223 1 0.350407093763351 experiment 0.810396408941554 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control TAF8 ENSG00000137413 UTR3 Human protein_coding chr6:42045727 chr6:42045733 . . 0 27 hm5C_associated_SNPs_6883 0 0 0 0 0 Nucleus 1 0.500231373728313 1 0.999537252543374 hm5C_site_9635 DeepMRMD:1;iRNA_m5C:0.999537252543374 9636 chr6 42045733 42045733 1 + A T rs571053501 42045735 + 42045715 42045755 41 AACTCCTGACCTCAAGTGATCCACCCGCATTGGCCTCCCAA AACTCCTGACCTCAAGTGTTCCACCCGCATTGGCCTCCCAA < 41bp 1 0.0745574997560275 1 0.0737152993679047 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control TAF8 ENSG00000137413 UTR3 Human protein_coding chr6:42045735 chr6:42045733 . . 0 19 hm5C_associated_SNPs_6884 0 0 0 0 0 Nucleus 1 0.500231643956773 1 0.999536712086455 hm5C_site_9636 DeepMRMD:1;iRNA_m5C:0.999536712086455 9637 chr6 42045733 42045733 1 + A T rs571053501 42045736 + 42045716 42045756 41 ACTCCTGACCTCAAGTGATCCACCCGCATTGGCCTCCCAAA ACTCCTGACCTCAAGTGTTCCACCCGCATTGGCCTCCCAAA < 41bp 1 0.397058663508506 1 0.038342297077179 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control TAF8 ENSG00000137413 UTR3 Human protein_coding chr6:42045736 chr6:42045733 . . 0 18 hm5C_associated_SNPs_6885 0 0 0 0 0 Nucleus 1 0.500231643920303 1 0.999536712159394 hm5C_site_9637 DeepMRMD:1;iRNA_m5C:0.999536712159394 9638 chr6 42573513 42573513 1 + T C rs17855250 42573505 + 42573485 42573525 41 TGCTGTTTAATGATGAGGTTCACACCTATGAACAAGTTATT TGCTGTTTAATGATGAGGTTCACACCTACGAACAAGTTATT < 41bp 1 0.0652626508729152 1 0.0690574944019318 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBR2 ENSG00000024048 CDS Human protein_coding chr6:42573505 chr6:42573513 synonymous SNV . 0 29 hm5C_associated_SNPs_6886 0 0 1 0 2 Cytosol 1 0.500232221753776 1 0.999535556492449 hm5C_site_9638 DeepMRMD:1;iRNA_m5C:0.999535556492449 9639 chr6 42854104 42854104 1 + C T rs201862271 42854092 + 42854072 42854112 41 GGTTCTTGTGCCCTTTCCACCTCTCAGTGGCCCGTCATGCT GGTTCTTGTGCCCTTTCCACCTCTCAGTGGCCTGTCATGCT < 41bp 1 0.289068690942512 1 0.173596054315567 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42854092 chr6:42854104 nonsynonymous SNV 0.984 1 33 hm5C_associated_SNPs_6887 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_9639 DeepMRMD:1;iRNA_m5C:0.999536712157815 9640 chr6 42854104 42854104 1 + C T rs201862271 42854111 + 42854091 42854131 41 CCTCTCAGTGGCCCGTCATGCTACCAAAAATAGAGTGGGCT CCTCTCAGTGGCCTGTCATGCTACCAAAAATAGAGTGGGCT < 41bp 1 0.352578607479783 1 0.278323352336884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42854111 chr6:42854104 nonsynonymous SNV 0.984 1 14 hm5C_associated_SNPs_6888 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_9640 DeepMRMD:1;iRNA_m5C:0.999536712157816 9641 chr6 42855945 42855945 1 + C G rs552431809 42855933 + 42855913 42855953 41 GAGACAGTCTCACCCTGTTGCCCAGGCTGGAGCGCAGTGGC GAGACAGTCTCACCCTGTTGCCCAGGCTGGAGGGCAGTGGC < 41bp 1 0.192756397978543 1 0.110186189413071 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42855933 chr6:42855945 . . 0 33 hm5C_associated_SNPs_6890 0 0 1 0 0 Ribosome 1 0.500230922472836 1 0.999538155054327 hm5C_site_9641 DeepMRMD:1;iRNA_m5C:0.999538155054327 9642 chr6 42855945 42855945 1 + C G rs552431809 42855934 + 42855914 42855954 41 AGACAGTCTCACCCTGTTGCCCAGGCTGGAGCGCAGTGGCA AGACAGTCTCACCCTGTTGCCCAGGCTGGAGGGCAGTGGCA < 41bp 1 0.30747088181182 1 0.0933652818202972 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42855934 chr6:42855945 . . 0 32 hm5C_associated_SNPs_6891 0 0 1 0 0 Ribosome 1 0.500231643921866 1 0.999536712156268 hm5C_site_9642 DeepMRMD:1;iRNA_m5C:0.999536712156268 9643 chr6 42855945 42855945 1 + C G rs552431809 42855935 + 42855915 42855955 41 GACAGTCTCACCCTGTTGCCCAGGCTGGAGCGCAGTGGCAT GACAGTCTCACCCTGTTGCCCAGGCTGGAGGGCAGTGGCAT < 41bp 1 0.394740472422187 1 0.682636857032776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42855935 chr6:42855945 . . 0 31 hm5C_associated_SNPs_6892 0 0 1 0 0 Ribosome 1 0.50023163664239 0.634726285934448 0.999536726715221 hm5C_site_9643 DeepMRMD:0.634726285934448;iRNA_m5C:0.999536726715221 9644 chr6 42855945 42855945 1 + C G rs552431809 42855947 + 42855927 42855967 41 CTGTTGCCCAGGCTGGAGCGCAGTGGCATGATCTCAGCTCA CTGTTGCCCAGGCTGGAGGGCAGTGGCATGATCTCAGCTCA < 41bp 1 0.404858457223272 1 0.448146879673004 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42855947 chr6:42855945 . . 0 19 hm5C_associated_SNPs_6894 0 0 1 0 0 Ribosome 1 0.500231643921056 1 0.999536712157887 hm5C_site_9644 DeepMRMD:1;iRNA_m5C:0.999536712157887 9645 chr6 42855945 42855945 1 + C G rs552431809 42855953 + 42855933 42855973 41 CCCAGGCTGGAGCGCAGTGGCATGATCTCAGCTCATTGCAG CCCAGGCTGGAGGGCAGTGGCATGATCTCAGCTCATTGCAG < 41bp 1 0.63887329806449 1 0.296197980642319 experiment 0.722253403871019 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42855953 chr6:42855945 . . 0 13 hm5C_associated_SNPs_6895 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9645 DeepMRMD:1;iRNA_m5C:0.999536712157815 9646 chr6 42855945 42855945 1 + C G rs552431809 42855959 + 42855939 42855979 41 CTGGAGCGCAGTGGCATGATCTCAGCTCATTGCAGCCTCCA CTGGAGGGCAGTGGCATGATCTCAGCTCATTGCAGCCTCCA < 41bp 1 0.548471183874968 1 0.276508450508118 experiment 0.903057632250065 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42855959 chr6:42855945 . . 0 7 hm5C_associated_SNPs_6896 0 0 1 0 0 Ribosome 1 0.500231643949074 1 0.999536712101851 hm5C_site_9646 DeepMRMD:1;iRNA_m5C:0.999536712101851 9647 chr6 42855945 42855945 1 + C G rs552431809 42855961 + 42855941 42855981 41 GGAGCGCAGTGGCATGATCTCAGCTCATTGCAGCCTCCACC GGAGGGCAGTGGCATGATCTCAGCTCATTGCAGCCTCCACC < 41bp 1 0.620230410098199 1 0.815998256206512 experiment 0.759539179803602 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42855961 chr6:42855945 . . 0 5 hm5C_associated_SNPs_6897 0 0 1 0 0 Ribosome 1 0.500231643921093 0.368003487586976 0.999536712157815 hm5C_site_9647 DeepMRMD:0.368003487586976;iRNA_m5C:0.999536712157815 9648 chr6 42855945 42855945 1 + C G rs552431809 42855964 + 42855944 42855984 41 GCGCAGTGGCATGATCTCAGCTCATTGCAGCCTCCACCTCC GGGCAGTGGCATGATCTCAGCTCATTGCAGCCTCCACCTCC < 41bp 1 0.346878330194694 1 0.0962184369564056 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42855964 chr6:42855945 . . 0 2 hm5C_associated_SNPs_6898 0 0 1 0 0 Ribosome 1 0.500231643924808 1 0.999536712150383 hm5C_site_9648 DeepMRMD:1;iRNA_m5C:0.999536712150383 9649 chr6 42856146 42856146 1 + T C rs374276383 42856150 + 42856130 42856170 41 AAGTGATCCACAAGCCTGGGCCTCCCAAAGTGCTGGGATTA AAGTGATCCACAAGCCCGGGCCTCCCAAAGTGCTGGGATTA < 41bp 1 0.00946528363272667 1 0.0888178944587708 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42856150 chr6:42856146 . . 0 17 hm5C_associated_SNPs_6899 0 0 1 0 0 Ribosome 1 0.500231643918774 1 0.999536712162453 hm5C_site_9649 DeepMRMD:1;iRNA_m5C:0.999536712162453 9650 chr6 42856146 42856146 1 + T C rs374276383 42856151 + 42856131 42856171 41 AGTGATCCACAAGCCTGGGCCTCCCAAAGTGCTGGGATTAC AGTGATCCACAAGCCCGGGCCTCCCAAAGTGCTGGGATTAC < 41bp 1 0.116025627567519 1 0.114864557981491 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42856151 chr6:42856146 . . 0 16 hm5C_associated_SNPs_6900 0 0 1 0 0 Ribosome 1 0.50023163899423 1 0.99953672201154 hm5C_site_9650 DeepMRMD:1;iRNA_m5C:0.99953672201154 9651 chr6 42856146 42856146 1 + T C rs374276383 42856153 + 42856133 42856173 41 TGATCCACAAGCCTGGGCCTCCCAAAGTGCTGGGATTACAG TGATCCACAAGCCCGGGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.200047164613859 1 0.0472400486469269 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42856153 chr6:42856146 . . 0 14 hm5C_associated_SNPs_6901 0 0 1 0 0 Ribosome 1 0.500231643924342 1 0.999536712151315 hm5C_site_9651 DeepMRMD:1;iRNA_m5C:0.999536712151315 9652 chr6 42856146 42856146 1 + T C rs374276383 42856154 + 42856134 42856174 41 GATCCACAAGCCTGGGCCTCCCAAAGTGCTGGGATTACAGG GATCCACAAGCCCGGGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.273580573799421 1 0.189117550849915 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42856154 chr6:42856146 . . 0 13 hm5C_associated_SNPs_6902 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9652 DeepMRMD:1;iRNA_m5C:0.999536712157815 9653 chr6 42856146 42856146 1 + T C rs374276383 42856155 + 42856135 42856175 41 ATCCACAAGCCTGGGCCTCCCAAAGTGCTGGGATTACAGGC ATCCACAAGCCCGGGCCTCCCAAAGTGCTGGGATTACAGGC < 41bp 1 0.568686672697134 1 0.46983590722084 experiment 0.862626654605733 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42856155 chr6:42856146 . . 0 12 hm5C_associated_SNPs_6903 0 0 1 0 0 Ribosome 1 0.50023164392107 1 0.999536712157859 hm5C_site_9653 DeepMRMD:1;iRNA_m5C:0.999536712157859 9654 chr6 42856179 42856179 1 + A G rs150681517 42856175 + 42856155 42856195 41 CAAAGTGCTGGGATTACAGGCATGAGCAACTGCGCCCAGCT CAAAGTGCTGGGATTACAGGCATGGGCAACTGCGCCCAGCT < 41bp 1 0.360559920864185 1 0.556151211261749 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42856175 chr6:42856179 . . 0 25 hm5C_associated_SNPs_6906 0 0 1 0 0 Ribosome 1 0.500231643921092 0.887697577476502 0.999536712157816 hm5C_site_9654 DeepMRMD:0.887697577476502;iRNA_m5C:0.999536712157816 9655 chr6 42856188 42856188 1 + G A rs112992088 42856175 + 42856155 42856195 41 CAAAGTGCTGGGATTACAGGCATGAGCAACTGCGCCCAGCT CAAAGTGCTGGGATTACAGGCATGAGCAACTGCACCCAGCT < 41bp 1 0.417951055792989 1 0.339552044868469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL7L1 ENSG00000146223 UTR3 Human protein_coding chr6:42856175 chr6:42856188 . . 0 34 hm5C_associated_SNPs_6907 0 0 1 0 0 Ribosome 1 0.500231643921086 1 0.999536712157828 hm5C_site_9655 DeepMRMD:1;iRNA_m5C:0.999536712157828 9656 chr6 42996940 42996940 1 + A G rs148480237 42996946 + 42996926 42996966 41 CAGGCAAGGACAGGAGACATCTCCCTTTGAGCAAAGAGTAA CAGGCAAGGACAGGGGACATCTCCCTTTGAGCAAAGAGTAA < 41bp 1 0.445620826951666 1 0.650355935096741 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RRP36 ENSG00000124541 CDS Human protein_coding chr6:42996946 chr6:42996940 nonsynonymous SNV 0.999 3 15 hm5C_associated_SNPs_6908 0 0 1 0 0 Ribosome 1 0.500231788801233 0.699288129806518 0.999536422397533 hm5C_site_9656 DeepMRMD:0.699288129806518;iRNA_m5C:0.999536422397533 9657 chr6 42996962 42996962 1 + A C rs376410795 42996946 + 42996926 42996966 41 CAGGCAAGGACAGGAGACATCTCCCTTTGAGCAAAGAGTAA CAGGCAAGGACAGGAGACATCTCCCTTTGAGCAAAGCGTAA < 41bp 1 0.479852368081547 1 0.752239346504211 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RRP36 ENSG00000124541 CDS Human protein_coding chr6:42996946 chr6:42996962 nonsynonymous SNV 0.943 1 37 hm5C_associated_SNPs_6909 0 0 1 0 0 Ribosome 1 0.500231643921488 0.495521306991578 0.999536712157024 hm5C_site_9657 DeepMRMD:0.495521306991578;iRNA_m5C:0.999536712157024 9658 chr6 43110003 43110003 1 + C T rs45453593 43110021 + 43110001 43110041 41 AACATCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT AATATCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT < 41bp 1 0.0724645144505604 1 0.102291762828827 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK7 ENSG00000112655 CDS Human protein_coding chr6:43110021 chr6:43110003 synonymous SNV . 0 3 hm5C_associated_SNPs_6910 0 0 1 0 2 Endoplasmic reticulum 1 0.50023143451854 1 0.99953713096292 hm5C_site_9658 DeepMRMD:1;iRNA_m5C:0.99953713096292 9659 chr6 43189433 43189433 1 + G A rs148551617 43189429 + 43189409 43189449 41 AGCTTCCTCCATAGCATGACCTGTGCCAAATGTAACCATGG AGCTTCCTCCATAGCATGACCTGTACCAAATGTAACCATGG < 41bp 1 0.223725475423601 1 0.158482015132904 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43189429 chr6:43189433 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_6911 0 0 0 0 2 chromatin 1 0.50023164282516 1 0.999536714349679 hm5C_site_9659 DeepMRMD:1;iRNA_m5C:0.999536714349679 9660 chr6 43582840 43582840 1 + T G rs150227941 43582859 + 43582839 43582879 41 CTAAAAATAGAAAAATTAGCCAGGCACGTTCCAGGCACCTG CGAAAAATAGAAAAATTAGCCAGGCACGTTCCAGGCACCTG < 41bp 1 0.548443632658156 1 0.846433460712433 experiment 0.903112734683689 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POLH ENSG00000170734 UTR3 Human protein_coding chr6:43582859 chr6:43582840 . . 0 2 hm5C_associated_SNPs_6912 0 0 0 0 0 Nucleus 1 0.50023164446427 0.307133078575134 0.99953671107146 hm5C_site_9660 DeepMRMD:0.307133078575134;iRNA_m5C:0.99953671107146 9661 chr6 43753212 43753212 1 + A G rs10434 43753213 + 43753193 43753233 41 CTTCTGAGTTGCCCAGGAGACCACTGGCAGATGTCCCGGCG CTTCTGAGTTGCCCAGGAGGCCACTGGCAGATGTCCCGGCG < 41bp 1 0.550602784409037 1 0.543534874916077 experiment 0.898794431181927 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEGFA ENSG00000112715 UTR3 Human protein_coding chr6:43753213 chr6:43753212 . . 0 20 hm5C_associated_SNPs_6913 0 0 1 0 0 Nucleus 1 0.500222973162087 0.912930250167846 0.999554053675826 hm5C_site_9661 DeepMRMD:0.912930250167846;iRNA_m5C:0.999554053675826 9662 chr6 44197181 44197181 1 + G A rs8187630 44197173 + 44197153 44197193 41 TCATGCTGGGTCTGGGAACGCTGCTCCCGTGGAATTTTTTC TCATGCTGGGTCTGGGAACGCTGCTCCCATGGAATTTTTTC < 41bp 1 0.428338326305513 1 0.135340839624405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44197173 chr6:44197181 synonymous SNV . 0 29 hm5C_associated_SNPs_6914 0 0 1 0 2 Endoplasmic reticulum 1 0.50023163898319 1 0.999536722033619 hm5C_site_9662 DeepMRMD:1;iRNA_m5C:0.999536722033619 9663 chr6 44214827 44214827 1 + A C rs35966442 44214838 + 44214818 44214858 41 ACTTGGGGCACGCAGTAGCTCTCTCGAGTCACTCCGGCGCA ACTTGGGGCCCGCAGTAGCTCTCTCGAGTCACTCCGGCGCA < 41bp 1 0.3408496938011 1 0.150722593069077 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSP90AB1 ENSG00000096384 UTR5 Human protein_coding chr6:44214838 chr6:44214827 . . 0 10 hm5C_associated_SNPs_6915 0 0 1 0 0 Nucleus 1 0.500231643834027 1 0.999536712331946 hm5C_site_9663 DeepMRMD:1;iRNA_m5C:0.999536712331946 9664 chr6 44214828 44214828 1 + C A rs558489658 44214838 + 44214818 44214858 41 ACTTGGGGCACGCAGTAGCTCTCTCGAGTCACTCCGGCGCA ACTTGGGGCAAGCAGTAGCTCTCTCGAGTCACTCCGGCGCA < 41bp 1 0.321361618399174 1 0.115372955799103 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSP90AB1 ENSG00000096384 UTR5 Human protein_coding chr6:44214838 chr6:44214828 . . 0 11 hm5C_associated_SNPs_6916 0 0 1 0 0 Nucleus 1 0.500231643915818 1 0.999536712168365 hm5C_site_9664 DeepMRMD:1;iRNA_m5C:0.999536712168365 9665 chr6 44218120 44218120 1 + A G rs13296 44218121 + 44218101 44218141 41 ATAAAGATGATGAAGAAAAACCCAAGATCGAAGATGTGGGT ATAAAGATGATGAAGAAAAGCCCAAGATCGAAGATGTGGGT < 41bp 1 0.507864862322459 1 0.169384002685547 experiment 0.984270275355082 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218121 chr6:44218120 synonymous SNV . 0 20 hm5C_associated_SNPs_6917 0 0 1 0 1 Nucleus 1 0.500231622771864 1 0.999536754456271 hm5C_site_9665 DeepMRMD:1;iRNA_m5C:0.999536754456271 9666 chr6 44219803 44219803 1 + G A rs324134 44219794 + 44219774 44219814 41 GAGCGAGTGCGGAAACGGGGCTTCGAGGTGGTATATATGAC GAGCGAGTGCGGAAACGGGGCTTCGAGGTAGTATATATGAC < 41bp 1 0.22398425428742 1 0.395386278629303 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219794 chr6:44219803 synonymous SNV . 0 30 hm5C_associated_SNPs_6918 0 0 1 0 1 Nucleus 1 0.500231644079416 1 0.999536711841168 hm5C_site_9666 DeepMRMD:1;iRNA_m5C:0.999536711841168 9667 chr6 44219803 44219803 1 + G A rs324134 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCGAGGTAGTATATATGACCGAGCCCATTGACGAGTACT < 41bp 1 0.294512791019274 1 0.108332812786102 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219803 synonymous SNV . 0 10 hm5C_associated_SNPs_6919 0 0 1 0 1 Nucleus 1 0.500231644653039 1 0.999536710693922 hm5C_site_9667 DeepMRMD:1;iRNA_m5C:0.999536710693922 9668 chr6 44219815 44219815 1 + C G rs149243943 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCGAGGTGGTATATATGACGGAGCCCATTGACGAGTACT < 41bp 1 0.656976440127241 1 0.659808456897736 experiment 0.686047119745517 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219815 synonymous SNV . 0 22 hm5C_associated_SNPs_6920 0 0 1 0 1 Nucleus 1 0.500231659377175 0.680383086204528 0.999536681245651 hm5C_site_9668 DeepMRMD:0.680383086204528;iRNA_m5C:0.999536681245651 9669 chr6 44219815 44219815 1 + C G rs149243943 44219833 + 44219813 44219853 41 ACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGA ACGGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGA < 41bp 1 0.512520646624403 1 0.0400611162185669 experiment 0.974958706751195 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219833 chr6:44219815 synonymous SNV . 0 3 hm5C_associated_SNPs_6922 0 0 1 0 1 Nucleus 1 0.500249011913644 1 0.999501976172713 hm5C_site_9669 DeepMRMD:1;iRNA_m5C:0.999501976172713 9670 chr6 44221404 44221404 1 + G A rs11538984 44221411 + 44221391 44221431 41 CCACTGCAGCCTCGAGTGCCCCTGTCCCACCTGGCTCCCCC CCACTGCAGCCTCAAGTGCCCCTGTCCCACCTGGCTCCCCC < 41bp 1 0.346609353573376 1 0.0453041791915894 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSP90AB1 ENSG00000096384 UTR3 Human protein_coding chr6:44221411 chr6:44221404 . . 0 14 hm5C_associated_SNPs_6923 0 0 1 1 0 Nucleus 1 0.500231643991474 1 0.999536712017051 hm5C_site_9670 DeepMRMD:1;iRNA_m5C:0.999536712017051 9671 chr6 44274725 44274725 1 + T A rs147091256 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGTCGAGCTGTGCGTTTCTCCTTGGAGATCTTAAAGGCACC < 41bp 1 0.49433126532283 1 0.692099690437317 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274725 nonsynonymous SNV 0.095 0 22 hm5C_associated_SNPs_6924 2 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.615800619125366 0.999536712157815 hm5C_site_9671 DeepMRMD:0.615800619125366;iRNA_m5C:0.999536712157815 Combined oxidative phosphorylation deficiency Combined oxidative phosphorylation deficiency 9672 chr6 44376192 44376192 1 + A G rs141567880 44376196 + 44376176 44376216 41 TTTAGATTTCAGATGCAGAACTCCAGGAAGTTGTAAAAGTA TTTAGATTTCAGATGCGGAACTCCAGGAAGTTGTAAAAGTA < 41bp 1 0.681639413010198 1 0.916961908340454 experiment 0.636721173979604 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC5L ENSG00000096401 CDS Human protein_coding chr6:44376196 chr6:44376192 synonymous SNV . 0 17 hm5C_associated_SNPs_6925 0 0 1 0 1 Nucleus 1 0.500231643921092 0.166076183319092 0.999536712157815 hm5C_site_9672 DeepMRMD:0.166076183319092;iRNA_m5C:0.999536712157815 9673 chr6 47576969 47576969 1 + T A rs34069459 47576982 + 47576962 47577002 41 AAAAAAATTCCCTGGATGAACTTAGAGCCCAGATTATTGAA AAAAAAAATCCCTGGATGAACTTAGAGCCCAGATTATTGAA < 41bp 1 0.23126152534306 1 0.0954552292823792 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47576982 chr6:47576969 nonsynonymous SNV 0.976 0 8 hm5C_associated_SNPs_6928 1 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9673 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 9674 chr6 57182453 57182453 1 + A G rs558821130 57182463 + 57182443 57182483 41 CCACCCGGGAACAGTGGCTGCCACCGTTTGTGTTTTCCCGA CCACCCGGGAGCAGTGGCTGCCACCGTTTGTGTTTTCCCGA < 41bp 1 0.189609983297106 1 0.274285733699799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRIM2 ENSG00000146143 UTR5 Human protein_coding chr6:57182463 chr6:57182453 . . 0 11 hm5C_associated_SNPs_6931 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9674 DeepMRMD:1;iRNA_m5C:0.999536712157815 9675 chr6 64288832 64288832 1 + A G rs11547434 64288830 + 64288810 64288850 41 CTTTTGATGATGGTGCACCACCATCCAACCAGATTGTTGAT CTTTTGATGATGGTGCACCACCGTCCAACCAGATTGTTGAT < 41bp 1 0.074339705344068 1 0.193542987108231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 CDS Human protein_coding chr6:64288830 chr6:64288832 synonymous SNV . 0 23 hm5C_associated_SNPs_6932 0 0 1 0 1 Ribosome 1 0.500230437092398 1 0.999539125815204 hm5C_site_9675 DeepMRMD:1;iRNA_m5C:0.999539125815204 9676 chr6 64288832 64288832 1 + A G rs11547434 64288831 + 64288811 64288851 41 TTTTGATGATGGTGCACCACCATCCAACCAGATTGTTGATG TTTTGATGATGGTGCACCACCGTCCAACCAGATTGTTGATG < 41bp 1 0.160411193891577 1 0.227948069572449 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 CDS Human protein_coding chr6:64288831 chr6:64288832 synonymous SNV . 0 22 hm5C_associated_SNPs_6933 0 0 1 0 1 Ribosome 1 0.50023164392111 1 0.999536712157781 hm5C_site_9676 DeepMRMD:1;iRNA_m5C:0.999536712157781 9677 chr6 64290586 64290586 1 + C T rs575129323 64290589 + 64290569 64290609 41 TGCTCACTTTATGTTTACATCTCCCACATTCATACCAATAT TGCTCACTTTATGTTTATATCTCCCACATTCATACCAATAT < 41bp 1 0.353979678545329 1 0.130936622619629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 UTR3 Human protein_coding chr6:64290589 chr6:64290586 . . 0 18 hm5C_associated_SNPs_6934 0 0 1 8 0 Ribosome 1 0.500232070926269 1 0.999535858147462 hm5C_site_9677 DeepMRMD:1;iRNA_m5C:0.999535858147462 9678 chr6 72003256 72003256 1 + T C rs35741445 72003257 + 72003237 72003277 41 ACTTCAAAGATATCCGATATCAAAATGACTTGAGCAATCTT ACTTCAAAGATATCCGATACCAAAATGACTTGAGCAATCTT < 41bp 1 0.596079605526124 1 0.233906120061874 experiment 0.807840788947753 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003257 chr6:72003256 synonymous SNV . 0 20 hm5C_associated_SNPs_6935 0 0 1 0 2 exosome 1 0.500231505633753 1 0.999536988732493 hm5C_site_9678 DeepMRMD:1;iRNA_m5C:0.999536988732493 9679 chr6 74475655 74475655 1 + G T rs138778967 74475665 + 74475645 74475685 41 ACCATTAGGTGAAGGTAACTCGTGCTGATGGCAACCAACTG ACCATTAGGTTAAGGTAACTCGTGCTGATGGCAACCAACTG < 41bp 1 0.261774299807261 1 0.345720082521439 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74475665 chr6:74475655 synonymous SNV . 0 11 hm5C_associated_SNPs_6936 0 0 0 0 1 Ribosome 1 0.500231643873234 1 0.999536712253532 hm5C_site_9679 DeepMRMD:1;iRNA_m5C:0.999536712253532 9680 chr6 74475675 74475675 1 + G A rs7741152 74475665 + 74475645 74475685 41 ACCATTAGGTGAAGGTAACTCGTGCTGATGGCAACCAACTG ACCATTAGGTGAAGGTAACTCGTGCTGATGACAACCAACTG < 41bp 1 0.317303806890209 1 0.374785423278809 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74475665 chr6:74475675 nonsynonymous SNV 0.979 1 31 hm5C_associated_SNPs_6937 0 0 0 0 1 Ribosome 1 0.500232132084781 1 0.999535735830437 hm5C_site_9680 DeepMRMD:1;iRNA_m5C:0.999535735830437 9681 chr6 74534122 74534122 1 + A G rs6907830 74534115 + 74534095 74534135 41 CCACATCCTCAGCCCCACACCAGCTCTATTTCAGGGGTGAG CCACATCCTCAGCCCCACACCAGCTCTGTTTCAGGGGTGAG < 41bp 1 0.379105501139339 1 0.207456916570663 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD109 ENSG00000156535 UTR3 Human protein_coding chr6:74534115 chr6:74534122 . . 0 28 hm5C_associated_SNPs_6938 0 0 0 0 0 Ribosome 1 0.500231643921108 1 0.999536712157784 hm5C_site_9681 DeepMRMD:1;iRNA_m5C:0.999536712157784 9682 chr6 76628275 76628275 1 + A G rs73751758 76628270 + 76628250 76628290 41 CTTAGCACATAGGAATGGCACTGCCATACTGGAGAAGGTCA CTTAGCACATAGGAATGGCACTGCCGTACTGGAGAAGGTCA < 41bp 1 0.439403511701922 1 0.0407850444316864 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYO6 ENSG00000196586 UTR3 Human protein_coding chr6:76628270 chr6:76628275 . . 0 26 hm5C_associated_SNPs_6939 2 0 0 0 0 Ribosome 1 0.500231645143642 1 0.999536709712717 hm5C_site_9682 DeepMRMD:1;iRNA_m5C:0.999536709712717 Nonsyndromic Hearing Loss, Dominant Nonsyndromic Hearing Loss, Dominant 9683 chr6 80741206 80741206 1 + A G rs56007972 80741213 + 80741193 80741233 41 TCTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT TCTTCTTCAGCAAGTGAATGCATTTCGGTTAAAGGAAGAAT < 41bp 1 0.0311986387858867 1 0.122527986764908 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTK ENSG00000112742 CDS Human protein_coding chr6:80741213 chr6:80741206 nonsynonymous SNV 0.983 0 14 hm5C_associated_SNPs_6940 0 0 1 0 2 chromatin 1 0.500231643745655 1 0.999536712508689 hm5C_site_9683 DeepMRMD:1;iRNA_m5C:0.999536712508689 9684 chr6 87932908 87932908 1 + C T rs9351121 87932918 + 87932898 87932938 41 AAGCGATTCTCCCACCTCAGCCTCCCGAGTAGCTGGGACCG AAGCGATTCTTCCACCTCAGCCTCCCGAGTAGCTGGGACCG < 41bp 1 0.021288870643754 1 0.045168936252594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF292 ENSG00000188994 intronic Human protein_coding chr6:87932918 chr6:87932908 . . 0 11 hm5C_associated_SNPs_6941 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9684 DeepMRMD:1;iRNA_m5C:0.999536712157815 9685 chr6 87932908 87932908 1 + C T rs9351121 87932919 + 87932899 87932939 41 AGCGATTCTCCCACCTCAGCCTCCCGAGTAGCTGGGACCGC AGCGATTCTTCCACCTCAGCCTCCCGAGTAGCTGGGACCGC < 41bp 1 0.109731943636057 1 0.549833714962006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF292 ENSG00000188994 intronic Human protein_coding chr6:87932919 chr6:87932908 . . 0 10 hm5C_associated_SNPs_6942 0 0 0 0 0 Cytosol 1 0.500231643921094 0.900332570075988 0.999536712157812 hm5C_site_9685 DeepMRMD:0.900332570075988;iRNA_m5C:0.999536712157812 9686 chr6 87932908 87932908 1 + C T rs9351121 87932921 + 87932901 87932941 41 CGATTCTCCCACCTCAGCCTCCCGAGTAGCTGGGACCGCAG CGATTCTTCCACCTCAGCCTCCCGAGTAGCTGGGACCGCAG < 41bp 1 0.410440309868894 1 0.604968905448914 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF292 ENSG00000188994 intronic Human protein_coding chr6:87932921 chr6:87932908 . . 0 8 hm5C_associated_SNPs_6943 0 0 0 0 0 Cytosol 1 0.500231643926845 0.790062189102172 0.99953671214631 hm5C_site_9686 DeepMRMD:0.790062189102172;iRNA_m5C:0.99953671214631 9687 chr6 87932908 87932908 1 + C T rs9351121 87932922 + 87932902 87932942 41 GATTCTCCCACCTCAGCCTCCCGAGTAGCTGGGACCGCAGG GATTCTTCCACCTCAGCCTCCCGAGTAGCTGGGACCGCAGG < 41bp 1 0.142170097964875 1 0.81123161315918 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF292 ENSG00000188994 intronic Human protein_coding chr6:87932922 chr6:87932908 . . 0 7 hm5C_associated_SNPs_6944 0 0 0 0 0 Cytosol 1 0.500231643926686 0.37753677368164 0.999536712146627 hm5C_site_9687 DeepMRMD:0.37753677368164;iRNA_m5C:0.999536712146627 9688 chr6 87932948 87932948 1 + A G rs7752882 87932930 + 87932910 87932950 41 CACCTCAGCCTCCCGAGTAGCTGGGACCGCAGGCATGTACC CACCTCAGCCTCCCGAGTAGCTGGGACCGCAGGCATGTGCC < 41bp 1 0.643718782951111 1 0.520845890045166 experiment 0.712562434097779 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF292 ENSG00000188994 intronic Human protein_coding chr6:87932930 chr6:87932948 . . 0 39 hm5C_associated_SNPs_6945 0 0 0 0 0 Cytosol 1 0.500231569607322 0.958308219909668 0.999536860785357 hm5C_site_9688 DeepMRMD:0.958308219909668;iRNA_m5C:0.999536860785357 9689 chr6 87967478 87967478 1 + T C rs142923098 87967481 + 87967461 87967501 41 GATGGGAAATTTATCTGTAGCAGGTGTTACAGGGCTTTTAC GATGGGAAATTTATCTGCAGCAGGTGTTACAGGGCTTTTAC < 41bp 1 0.510137102982599 1 0.556366860866547 experiment 0.979725794034801 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF292 ENSG00000188994 CDS Human protein_coding chr6:87967481 chr6:87967478 synonymous SNV . 0 18 hm5C_associated_SNPs_6946 0 0 1 0 0 Cytosol 1 0.500231643920923 0.887266278266906 0.999536712158154 hm5C_site_9689 DeepMRMD:0.887266278266906;iRNA_m5C:0.999536712158154 9690 chr6 88346196 88346196 1 + G T rs143108637 88346186 + 88346166 88346206 41 GGATTCAGAGGAGTATGCATCAGTCTTGCAGCTGCTGAGGT GGATTCAGAGGAGTATGCATCAGTCTTGCATCTGCTGAGGT < 41bp 1 0.224690198331979 1 0.598425209522247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ORC3 ENSG00000135336 CDS Human protein_coding chr6:88346186 chr6:88346196 nonsynonymous SNV 0.797 4 31 hm5C_associated_SNPs_6947 0 0 1 2 2 Cytosol 1 0.500231629224408 0.803149580955506 0.999536741551183 hm5C_site_9690 DeepMRMD:0.803149580955506;iRNA_m5C:0.999536741551183 9691 chr6 89872720 89872720 1 + A G rs143723220 89872740 + 89872720 89872760 41 AGGTGATGCACCTGCCTCGGCCTCCTAAAGTGCTGGGATTA GGGTGATGCACCTGCCTCGGCCTCCTAAAGTGCTGGGATTA < 41bp 1 0.165768727723315 1 0.24682742357254 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PM20D2 ENSG00000146281 UTR3 Human protein_coding chr6:89872740 chr6:89872720 . . 0 1 hm5C_associated_SNPs_6948 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9691 DeepMRMD:1;iRNA_m5C:0.999536712157815 9692 chr6 90342259 90342259 1 + G A rs9362668 90342271 - 90342251 90342291 41 GGTGGCACACGCCTGTAGTCCCAAGCTACTTGCGAGGTTGA GGTGGCACACGCCTGTAGTCCCAAGCTACTTGTGAGGTTGA < 41bp 1 0.177028071026754 1 0.278421580791473 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANKRD6;LYRM2 ENSG00000083099;ENSG00000135299 UTR3 Human other chr6:90342271 chr6:90342259 . . 0 33 hm5C_associated_SNPs_6949 0 0 1 0 0 unknown 1 0.50023164344255 1 0.999536713114901 hm5C_site_9692 DeepMRMD:1;iRNA_m5C:0.999536713114901 9693 chr6 107956326 107956326 1 + C T rs200782843 107956346 + 107956326 107956366 41 CCTGAGGAACCGGCGGTGAGCGAGCTAGAGTCGGTCAAGGA TCTGAGGAACCGGCGGTGAGCGAGCTAGAGTCGGTCAAGGA < 41bp 1 0.532240484569132 1 0.450939983129501 experiment 0.935519030861735 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SOBP ENSG00000112320 CDS Human protein_coding chr6:107956346 chr6:107956326 nonsynonymous SNV 0.628 0 1 hm5C_associated_SNPs_6950 0 0 0 0 0 cytosol 1 0.50023164390112 1 0.999536712197761 hm5C_site_9693 DeepMRMD:1;iRNA_m5C:0.999536712197761 9694 chr6 108487936 108487936 1 + C T rs17840265 108487938 + 108487918 108487958 41 CGGCCGGGACTCGGGCAGCGCCCACCAACCGCTCCGCCCCG CGGCCGGGACTCGGGCAGTGCCCACCAACCGCTCCGCCCCG < 41bp 1 0.48414500333476 1 0.202457785606384 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR2E1 ENSG00000112333 UTR5 Human protein_coding chr6:108487938 chr6:108487936 . . 0 19 hm5C_associated_SNPs_6952 0 0 0 0 1 exosome 1 0.500230964561448 1 0.999538070877103 hm5C_site_9694 DeepMRMD:1;iRNA_m5C:0.999538070877103 9695 chr6 108487936 108487936 1 + C T rs17840265 108487939 + 108487919 108487959 41 GGCCGGGACTCGGGCAGCGCCCACCAACCGCTCCGCCCCGG GGCCGGGACTCGGGCAGTGCCCACCAACCGCTCCGCCCCGG < 41bp 1 0.60786473197615 1 0.677229940891266 experiment 0.7842705360477 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR2E1 ENSG00000112333 UTR5 Human protein_coding chr6:108487939 chr6:108487936 . . 0 18 hm5C_associated_SNPs_6953 0 0 0 0 1 exosome 1 0.500231643967645 0.645540118217468 0.999536712064711 hm5C_site_9695 DeepMRMD:0.645540118217468;iRNA_m5C:0.999536712064711 9696 chr6 110056402 110056402 1 + C A rs121908288 110056408 + 110056388 110056428 41 ATCTCACTGTCTTGCGAATGCCCCTGGAGATGTTAAAGTCA ATCTCACTGTCTTGAGAATGCCCCTGGAGATGTTAAAGTCA < 41bp 1 0.150791427430949 1 0.105975657701492 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110056408 chr6:110056402 synonymous SNV . 0 15 hm5C_associated_SNPs_6954 0 0 0 0 2 Cytosol 1 0.50023164392113 1 0.99953671215774 hm5C_site_9696 DeepMRMD:1;iRNA_m5C:0.99953671215774 9697 chr6 110062679 110062679 1 + A G rs61729092 110062698 + 110062678 110062718 41 CACTCTAATAGCTAGAAGATCCAGTAAATTTGCTGGCACCC CGCTCTAATAGCTAGAAGATCCAGTAAATTTGCTGGCACCC < 41bp 1 0.186783592416716 1 0.867338001728058 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110062698 chr6:110062679 nonsynonymous SNV 0.978 2 2 hm5C_associated_SNPs_6955 4 0 1 0 2 Cytosol 1 0.5002316439211 0.265323996543884 0.9995367121578 hm5C_site_9697 DeepMRMD:0.265323996543884;iRNA_m5C:0.9995367121578 not specified not specified 9698 chr6 111288941 111288941 1 + T C rs41289884 111288931 + 111288911 111288951 41 AAATAGAAGATTCTGGTCCTCTTATTGATATACCTTCTGAG AAATAGAAGATTCTGGTCCTCTTATTGATACACCTTCTGAG < 41bp 1 0.237136056562894 1 0.0892696976661682 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF3C6 ENSG00000155115 CDS Human protein_coding chr6:111288931 chr6:111288941 nonsynonymous SNV 0.080 0 31 hm5C_associated_SNPs_6957 0 0 1 0 0 Ribosome 1 0.50023164407028 1 0.999536711859441 hm5C_site_9698 DeepMRMD:1;iRNA_m5C:0.999536711859441 9699 chr6 117859964 117859964 1 + G A rs76109131 117859950 + 117859930 117859970 41 ACAGTAGCAACAACCACAAACCACGAGAGTGGCTGGAGATC ACAGTAGCAACAACCACAAACCACGAGAGTGGCTAGAGATC < 41bp 1 0.240774797828517 1 0.185696631669998 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117859950 chr6:117859964 synonymous SNV . 0 35 hm5C_associated_SNPs_6958 0 0 0 0 1 Endoplasmic reticulum 1 0.50023221991871 1 0.99953556016258 hm5C_site_9699 DeepMRMD:1;iRNA_m5C:0.99953556016258 9700 chr6 117869491 117869491 1 + G A rs210621 117869492 + 117869472 117869512 41 CCCTCGCCACCGAAAGCGGGCACCCTGACTCTCAGAAGCCC CCCTCGCCACCGAAAGCGGACACCCTGACTCTCAGAAGCCC < 41bp 1 0.4037545967268 1 0.0352325141429901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117869492 chr6:117869491 synonymous SNV . 0 20 hm5C_associated_SNPs_6959 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643917394 1 0.999536712165211 hm5C_site_9700 DeepMRMD:1;iRNA_m5C:0.999536712165211 9701 chr6 117869594 117869594 1 + C T rs210622 117869589 + 117869569 117869609 41 CCTCAACCAGACGGCCATGACTGCCCTTTTGTGAACACAAT CCTCAACCAGACGGCCATGACTGCCTTTTTGTGAACACAAT < 41bp 1 0.511281190350373 1 0.237118571996689 experiment 0.977437619299255 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117869589 chr6:117869594 nonsynonymous SNV 0.995 2 26 hm5C_associated_SNPs_6960 0 0 1 2 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_9701 DeepMRMD:1;iRNA_m5C:0.999536712157815 9702 chr6 118015230 118015230 1 + C T rs146009370 118015223 + 118015203 118015243 41 GCCATTTGGCAGTGAAGGTGCTGTCTCCGGAAGATGGAAAA GCCATTTGGCAGTGAAGGTGCTGTCTCTGGAAGATGGAAAA < 41bp 1 0.185403332485599 1 0.276934325695038 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUS1 ENSG00000153989 CDS Human protein_coding chr6:118015223 chr6:118015230 nonsynonymous SNV 0.980 1 28 hm5C_associated_SNPs_6961 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643907646 1 0.999536712184708 hm5C_site_9702 DeepMRMD:1;iRNA_m5C:0.999536712184708 9703 chr6 118030238 118030238 1 + G T rs2498589 118030220 + 118030200 118030240 41 CTTGAAGTTCTAGGAAGAGGCAAACTACAAACTACTAGGAT CTTGAAGTTCTAGGAAGAGGCAAACTACAAACTACTAGTAT < 41bp 1 0.436515222398911 1 0.245862603187561 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUS1 ENSG00000153989 UTR3 Human protein_coding chr6:118030220 chr6:118030238 . . 0 39 hm5C_associated_SNPs_6962 0 1 0 0 0 Endoplasmic reticulum 1 0.500231643921085 1 0.99953671215783 hm5C_site_9703 DeepMRMD:1;iRNA_m5C:0.99953671215783 9704 chr6 118030453 118030453 1 + T C rs572493455 118030446 + 118030426 118030466 41 TTTATTTGTATTGGAAAATACTGTCTTTAAATTGTTTCTTG TTTATTTGTATTGGAAAATACTGTCTTCAAATTGTTTCTTG < 41bp 1 0.324676404173021 1 0.0562461018562317 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUS1 ENSG00000153989 UTR3 Human protein_coding chr6:118030446 chr6:118030453 . . 0 28 hm5C_associated_SNPs_6963 0 0 0 1 0 Endoplasmic reticulum 1 0.500216374318571 1 0.999567251362859 hm5C_site_9704 DeepMRMD:1;iRNA_m5C:0.999567251362859 9705 chr6 126251270 126251270 1 + G A rs147480564 126251268 + 126251248 126251288 41 AATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACTCA AATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACTCA < 41bp 1 0.65766432153766 1 0.73266726732254 experiment 0.68467135692468 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA7 ENSG00000111912 UTR3 Human protein_coding chr6:126251268 chr6:126251270 . . 0 23 hm5C_associated_SNPs_6964 0 0 1 0 0 Ribosome 1 0.500231643921092 0.53466546535492 0.999536712157815 hm5C_site_9705 DeepMRMD:0.53466546535492;iRNA_m5C:0.999536712157815 9706 chr6 126301044 126301044 1 + C G rs572085131 126301056 + 126301036 126301076 41 AGATCAGACGAGATCGGGCGCGTTCAGGGTGGTATGGCCGT AGATCAGAGGAGATCGGGCGCGTTCAGGGTGGTATGGCCGT < 41bp 1 0.336276911314971 1 0.0735529959201813 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HINT3 ENSG00000251920 ncRNA_exonic Human rRNA chr6:126301056 chr6:126301044 . . 0 9 hm5C_associated_SNPs_6967 0 0 0 0 0 Ribosome 1 0.5002316442037 1 0.999536711592599 hm5C_site_9706 DeepMRMD:1;iRNA_m5C:0.999536711592599 9707 chr6 130461644 130461644 1 + G A rs147937465 130461660 + 130461640 130461680 41 TAGTGTATTTTGAGTGGCATCAGTCTCACTCATCTTGGTGC TAGTATATTTTGAGTGGCATCAGTCTCACTCATCTTGGTGC < 41bp 1 0.190278332837334 1 0.145338863134384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control L3MBTL3 ENSG00000227678 ncRNA_intronic Human antisense chr6:130461660 chr6:130461644 . . 0 5 hm5C_associated_SNPs_6968 0 0 1 1 0 nucleoplasm 1 0.500231657726641 1 0.999536684546718 hm5C_site_9707 DeepMRMD:1;iRNA_m5C:0.999536684546718 9708 chr6 131904574 131904574 1 + G A rs182650447 131904583 + 131904563 131904603 41 GCACACCAGTCGTGGGAGGTCTGACATACAGAGAAGGTCTC GCACACCAGTCATGGGAGGTCTGACATACAGAGAAGGTCTC < 41bp 1 0.442852274352552 1 0.220117837190628 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131904583 chr6:131904574 nonsynonymous SNV 0.470 1 12 hm5C_associated_SNPs_6971 0 0 1 0 2 exosome 1 0.500231643908103 1 0.999536712183795 hm5C_site_9708 DeepMRMD:1;iRNA_m5C:0.999536712183795 9709 chr6 132211747 132211747 1 + C A rs147396850 132211762 + 132211742 132211782 41 ACTGTCGACCAGAGTTAGAACGGAGCCCTCGGTGATGCGGA ACTGTAGACCAGAGTTAGAACGGAGCCCTCGGTGATGCGGA < 41bp 1 0.662336903214753 1 0.769708514213562 experiment 0.675326193570494 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENPP1 ENSG00000197594 UTR3 Human protein_coding chr6:132211762 chr6:132211747 . . 0 6 hm5C_associated_SNPs_6972 0 0 1 0 0 Nucleus 1 0.500231643830491 0.460582971572876 0.999536712339018 hm5C_site_9709 DeepMRMD:0.460582971572876;iRNA_m5C:0.999536712339018 9710 chr6 132211763 132211763 1 + G A rs1044548 132211762 + 132211742 132211782 41 ACTGTCGACCAGAGTTAGAACGGAGCCCTCGGTGATGCGGA ACTGTCGACCAGAGTTAGAACAGAGCCCTCGGTGATGCGGA < 41bp 1 0.608968772999951 1 0.525083899497986 experiment 0.782062454000099 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENPP1 ENSG00000197594 UTR3 Human protein_coding chr6:132211762 chr6:132211763 . . 0 22 hm5C_associated_SNPs_6973 2 0 1 0 0 Nucleus 1 0.500231771552443 0.949832201004028 0.999536456895113 hm5C_site_9710 DeepMRMD:0.949832201004028;iRNA_m5C:0.999536456895113 Arterial calcification of infancy Arterial calcification of infancy 9711 chr6 132211772 132211772 1 + G A rs11964389 132211762 + 132211742 132211782 41 ACTGTCGACCAGAGTTAGAACGGAGCCCTCGGTGATGCGGA ACTGTCGACCAGAGTTAGAACGGAGCCCTCAGTGATGCGGA < 41bp 1 0.686415357298933 1 0.681297719478607 experiment 0.627169285402134 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENPP1 ENSG00000197594 UTR3 Human protein_coding chr6:132211762 chr6:132211772 . . 0 31 hm5C_associated_SNPs_6974 0 0 1 0 0 Nucleus 1 0.500231643877204 0.637404561042786 0.999536712245593 hm5C_site_9711 DeepMRMD:0.637404561042786;iRNA_m5C:0.999536712245593 9712 chr6 133135710 133135710 1 + C G rs562408306 133135725 + 133135705 133135745 41 GGCCTCTTTCCCTGCCGCCGCCGAGTCGCGCGGAGGCGGAG GGCCTGTTTCCCTGCCGCCGCCGAGTCGCGCGGAGGCGGAG < 41bp 1 0.501304620424664 1 0.653038620948792 experiment 0.997390759150672 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPS12 ENSG00000112306 UTR5 Human protein_coding chr6:133135725 chr6:133135710 . . 0 6 hm5C_associated_SNPs_6975 0 0 1 0 1 Cytosol 1 0.500231643920992 0.693922758102416 0.999536712158016 hm5C_site_9712 DeepMRMD:0.693922758102416;iRNA_m5C:0.999536712158016 9713 chr6 133135737 133135737 1 + G C rs562249470 133135725 + 133135705 133135745 41 GGCCTCTTTCCCTGCCGCCGCCGAGTCGCGCGGAGGCGGAG GGCCTCTTTCCCTGCCGCCGCCGAGTCGCGCGCAGGCGGAG < 41bp 1 0.485316675055383 1 0.74211049079895 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPS12 ENSG00000112306 UTR5 Human protein_coding chr6:133135725 chr6:133135737 . . 0 33 hm5C_associated_SNPs_6976 0 0 1 0 1 Cytosol 1 0.500231643915357 0.5157790184021 0.999536712169287 hm5C_site_9713 DeepMRMD:0.5157790184021;iRNA_m5C:0.999536712169287 9714 chr6 133135884 133135884 1 + C G rs542049814 133135887 + 133135867 133135907 41 TTAGTGCGTTCAAGATTCAACTTCACCCGTAACCCACCGCC TTAGTGCGTTCAAGATTGAACTTCACCCGTAACCCACCGCC < 41bp 1 0.540910400555574 1 0.119156360626221 experiment 0.918179198888851 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 UTR5 Human protein_coding chr6:133135887 chr6:133135884 . . 0 18 hm5C_associated_SNPs_6977 0 0 1 0 1 Cytosol 1 0.500231643921089 1 0.999536712157821 hm5C_site_9714 DeepMRMD:1;iRNA_m5C:0.999536712157821 9715 chr6 133135886 133135886 1 + A C rs9483504 133135887 + 133135867 133135907 41 TTAGTGCGTTCAAGATTCAACTTCACCCGTAACCCACCGCC TTAGTGCGTTCAAGATTCACCTTCACCCGTAACCCACCGCC < 41bp 1 0.539335768670842 1 0.137883871793747 experiment 0.921328462658316 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 UTR5 Human protein_coding chr6:133135887 chr6:133135886 . . 0 20 hm5C_associated_SNPs_6978 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_9715 DeepMRMD:1;iRNA_m5C:0.999536712157815 9716 chr6 133136475 133136475 1 + C T rs114497802 133136469 + 133136449 133136489 41 TGAATGATGACTTTAATTGTCGGATACCCCTTCACTCCTTT TGAATGATGACTTTAATTGTCGGATATCCCTTCACTCCTTT < 41bp 1 0.356665549484094 1 0.155121177434921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD101 ENSG00000206754 ncRNA_exonic Human snoRNA chr6:133136469 chr6:133136475 . . 0 27 hm5C_associated_SNPs_6979 0 0 1 0 0 unknown 1 0.500231643892553 1 0.999536712214893 hm5C_site_9716 DeepMRMD:1;iRNA_m5C:0.999536712214893 9717 chr6 133136475 133136475 1 + C T rs114497802 133136477 + 133136457 133136497 41 GACTTTAATTGTCGGATACCCCTTCACTCCTTTTATGAGTG GACTTTAATTGTCGGATATCCCTTCACTCCTTTTATGAGTG < 41bp 1 0.0171738075905762 1 0.123581975698471 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD101 ENSG00000206754 ncRNA_exonic Human snoRNA chr6:133136477 chr6:133136475 . . 0 19 hm5C_associated_SNPs_6980 0 0 1 0 0 unknown 1 0.500231643920999 1 0.999536712158001 hm5C_site_9717 DeepMRMD:1;iRNA_m5C:0.999536712158001 9718 chr6 133136475 133136475 1 + C T rs114497802 133136478 + 133136458 133136498 41 ACTTTAATTGTCGGATACCCCTTCACTCCTTTTATGAGTGA ACTTTAATTGTCGGATATCCCTTCACTCCTTTTATGAGTGA < 41bp 1 0.511434776380044 1 0.595292687416077 experiment 0.977130447239912 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD101 ENSG00000206754 ncRNA_exonic Human snoRNA chr6:133136478 chr6:133136475 . . 0 18 hm5C_associated_SNPs_6981 0 0 1 0 0 unknown 1 0.500231643921215 0.809414625167846 0.999536712157571 hm5C_site_9718 DeepMRMD:0.809414625167846;iRNA_m5C:0.999536712157571 9719 chr6 133136475 133136475 1 + C T rs114497802 133136483 + 133136463 133136503 41 AATTGTCGGATACCCCTTCACTCCTTTTATGAGTGAAACAT AATTGTCGGATATCCCTTCACTCCTTTTATGAGTGAAACAT < 41bp 1 0.271634306988975 1 0.246878772974014 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD101 ENSG00000206754 ncRNA_exonic Human snoRNA chr6:133136483 chr6:133136475 . . 0 13 hm5C_associated_SNPs_6982 0 0 1 0 0 unknown 1 0.500231643921097 1 0.999536712157806 hm5C_site_9719 DeepMRMD:1;iRNA_m5C:0.999536712157806 9720 chr6 133136475 133136475 1 + C T rs114497802 133136485 + 133136465 133136505 41 TTGTCGGATACCCCTTCACTCCTTTTATGAGTGAAACATAA TTGTCGGATATCCCTTCACTCCTTTTATGAGTGAAACATAA < 41bp 1 0.0331284184139201 1 0.0679949820041656 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD101 ENSG00000206754 ncRNA_exonic Human snoRNA chr6:133136485 chr6:133136475 . . 0 11 hm5C_associated_SNPs_6983 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9720 DeepMRMD:1;iRNA_m5C:0.999536712157815 9721 chr6 133138002 133138002 1 + C T rs144823017 133137990 + 133137970 133138010 41 ACTGAACTGCCATGAGGAAACTGCCATGTCACCCTTCTGAT ACTGAACTGCCATGAGGAAACTGCCATGTCACTCTTCTGAT < 41bp 1 0.666724184855329 1 0.181681275367737 experiment 0.666551630289341 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD100 ENSG00000221500 ncRNA_exonic Human snoRNA chr6:133137990 chr6:133138002 . . 0 33 hm5C_associated_SNPs_6984 0 0 1 0 0 unknown 1 0.50024657044991 1 0.999506859100181 hm5C_site_9721 DeepMRMD:1;iRNA_m5C:0.999506859100181 9722 chr6 133138002 133138002 1 + C T rs144823017 133138001 + 133137981 133138021 41 ATGAGGAAACTGCCATGTCACCCTTCTGATTACAGCCACCT ATGAGGAAACTGCCATGTCACTCTTCTGATTACAGCCACCT < 41bp 1 0.324042853191577 1 0.0182510018348694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD100 ENSG00000221500 ncRNA_exonic Human snoRNA chr6:133138001 chr6:133138002 . . 0 22 hm5C_associated_SNPs_6985 0 0 1 0 0 unknown 1 0.500231423321507 1 0.999537153356986 hm5C_site_9722 DeepMRMD:1;iRNA_m5C:0.999537153356986 9723 chr6 133138002 133138002 1 + C T rs144823017 133138006 + 133137986 133138026 41 GAAACTGCCATGTCACCCTTCTGATTACAGCCACCTTTTGG GAAACTGCCATGTCACTCTTCTGATTACAGCCACCTTTTGG < 41bp 1 0.368057976644514 1 0.0454201698303223 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD100 ENSG00000221500 ncRNA_exonic Human snoRNA chr6:133138006 chr6:133138002 . . 0 17 hm5C_associated_SNPs_6986 0 0 1 0 0 unknown 1 0.500231643921057 1 0.999536712157886 hm5C_site_9723 DeepMRMD:1;iRNA_m5C:0.999536712157886 9724 chr6 133138010 133138010 1 + T C rs9389034 133137990 + 133137970 133138010 41 ACTGAACTGCCATGAGGAAACTGCCATGTCACCCTTCTGAT ACTGAACTGCCATGAGGAAACTGCCATGTCACCCTTCTGAC < 41bp 1 0.687298680273006 1 0.300259232521057 experiment 0.625402639453988 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD100 ENSG00000221500 ncRNA_exonic Human snoRNA chr6:133137990 chr6:133138010 . . 0 41 hm5C_associated_SNPs_6987 0 0 1 0 0 unknown 1 0.500232323473106 1 0.999535353053788 hm5C_site_9724 DeepMRMD:1;iRNA_m5C:0.999535353053788 9725 chr6 133138010 133138010 1 + T C rs9389034 133138001 + 133137981 133138021 41 ATGAGGAAACTGCCATGTCACCCTTCTGATTACAGCCACCT ATGAGGAAACTGCCATGTCACCCTTCTGACTACAGCCACCT < 41bp 1 0.191983221282009 1 0.00831890106201172 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD100 ENSG00000221500 ncRNA_exonic Human snoRNA chr6:133138001 chr6:133138010 . . 0 30 hm5C_associated_SNPs_6988 0 0 1 0 0 unknown 1 0.500231643551521 1 0.999536712896958 hm5C_site_9725 DeepMRMD:1;iRNA_m5C:0.999536712896958 9726 chr6 133138010 133138010 1 + T C rs9389034 133138006 + 133137986 133138026 41 GAAACTGCCATGTCACCCTTCTGATTACAGCCACCTTTTGG GAAACTGCCATGTCACCCTTCTGACTACAGCCACCTTTTGG < 41bp 1 0.269301904693826 1 0.0728597342967987 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD100 ENSG00000221500 ncRNA_exonic Human snoRNA chr6:133138006 chr6:133138010 . . 0 25 hm5C_associated_SNPs_6989 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9726 DeepMRMD:1;iRNA_m5C:0.999536712157815 9727 chr6 133138429 133138429 1 + C G rs115580799 133138418 + 133138398 133138438 41 AGACATACTTTAAAAACTGGCAATAGTAAAGCCATGTTACG AGACATACTTTAAAAACTGGCAATAGTAAAGGCATGTTACG < 41bp 1 0.588440684452277 1 0.101142644882202 experiment 0.823118631095447 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA33 ENSG00000200534 ncRNA_exonic Human snoRNA chr6:133138418 chr6:133138429 . . 0 32 hm5C_associated_SNPs_6990 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9727 DeepMRMD:1;iRNA_m5C:0.999536712157815 9728 chr6 133138429 133138429 1 + C G rs115580799 133138441 + 133138421 133138461 41 TAGTAAAGCCATGTTACGAGCCTTAAGGACATTGAAGTCGT TAGTAAAGGCATGTTACGAGCCTTAAGGACATTGAAGTCGT < 41bp 1 0.241795921390194 1 0.123777061700821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA33 ENSG00000200534 ncRNA_exonic Human snoRNA chr6:133138441 chr6:133138429 . . 0 9 hm5C_associated_SNPs_6991 0 0 1 2 0 unknown 1 0.500231647050597 1 0.999536705898807 hm5C_site_9728 DeepMRMD:1;iRNA_m5C:0.999536705898807 9729 chr6 133138429 133138429 1 + C G rs115580799 133138442 + 133138422 133138462 41 AGTAAAGCCATGTTACGAGCCTTAAGGACATTGAAGTCGTT AGTAAAGGCATGTTACGAGCCTTAAGGACATTGAAGTCGTT < 41bp 1 0.455311375571573 1 0.432725369930267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA33 ENSG00000200534 ncRNA_exonic Human snoRNA chr6:133138442 chr6:133138429 . . 0 8 hm5C_associated_SNPs_6992 0 0 1 2 0 unknown 1 0.500231622741775 1 0.999536754516451 hm5C_site_9729 DeepMRMD:1;iRNA_m5C:0.999536754516451 9730 chr6 133138484 133138484 1 + A G rs139120707 133138468 + 133138448 133138488 41 GACATTGAAGTCGTTAAGGTCCCTGAGAATGGCTATAACAA GACATTGAAGTCGTTAAGGTCCCTGAGAATGGCTATGACAA < 41bp 1 0.36494743485351 1 0.06863933801651 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA33 ENSG00000200534 ncRNA_exonic Human snoRNA chr6:133138468 chr6:133138484 . . 0 37 hm5C_associated_SNPs_6993 0 0 1 0 0 unknown 1 0.500231552336374 1 0.999536895327251 hm5C_site_9730 DeepMRMD:1;iRNA_m5C:0.999536895327251 9731 chr6 133852368 133852368 1 + C T rs114670853 133852353 + 133852333 133852373 41 GATTCTGTGTTCAGAAGAGGCTGCCGGCATAAAACCTAAAT GATTCTGTGTTCAGAAGAGGCTGCCGGCATAAAACTTAAAT < 41bp 1 0.423374976518326 1 0.300348460674286 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TARID ENSG00000227954 ncRNA_intronic Human antisense chr6:133852353 chr6:133852368 . . 0 36 hm5C_associated_SNPs_6995 0 0 0 0 1 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9731 DeepMRMD:1;iRNA_m5C:0.999536712157815 9732 chr6 134274351 134274351 1 + G A rs569927829 134274355 + 134274335 134274375 41 TTATTGTCGCGGGGAAGCTGCGGCCGCCTCGCACCCGGAAC TTATTGTCGCGGGGAAACTGCGGCCGCCTCGCACCCGGAAC < 41bp 1 0.639797759038724 1 0.558716416358948 experiment 0.720404481922552 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBPL1 ENSG00000028839 UTR5 Human protein_coding chr6:134274355 chr6:134274351 . . 0 17 hm5C_associated_SNPs_6996 0 0 0 0 0 Ribosome 1 0.500231643920865 0.882567167282104 0.999536712158271 hm5C_site_9732 DeepMRMD:0.882567167282104;iRNA_m5C:0.999536712158271 9733 chr6 135523732 135523732 1 + C T rs210801 135523736 + 135523716 135523756 41 GGCTGGTCTTGAACTCCTGACCTCAGGTGATCTACCCGCCT GGCTGGTCTTGAACTCTTGACCTCAGGTGATCTACCCGCCT < 41bp 1 0.252300981552655 1 0.0902288556098938 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYB ENSG00000118513 CDS Human protein_coding chr6:135523736 chr6:135523732 synonymous SNV . 0 17 hm5C_associated_SNPs_6997 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_9733 DeepMRMD:1;iRNA_m5C:0.999536712157815 9734 chr6 135523741 135523741 1 + G A rs183489799 135523736 + 135523716 135523756 41 GGCTGGTCTTGAACTCCTGACCTCAGGTGATCTACCCGCCT GGCTGGTCTTGAACTCCTGACCTCAAGTGATCTACCCGCCT < 41bp 1 0.180533904468566 1 0.0722374320030212 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYB ENSG00000118513 CDS Human protein_coding chr6:135523736 chr6:135523741 nonsynonymous SNV 0.003 1 26 hm5C_associated_SNPs_6998 0 0 0 0 1 Nucleus 1 0.50023166576819 1 0.99953666846362 hm5C_site_9734 DeepMRMD:1;iRNA_m5C:0.99953666846362 9735 chr6 135523774 135523774 1 + A G rs7762830 135523764 + 135523744 135523784 41 GATCTACCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGG GATCTACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.323584278763212 1 0.646800816059113 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYB ENSG00000118513 CDS Human protein_coding chr6:135523764 chr6:135523774 nonsynonymous SNV 0.000 1 31 hm5C_associated_SNPs_6999 0 0 0 0 1 Nucleus 1 0.500231644813443 0.706398367881774 0.999536710373115 hm5C_site_9735 DeepMRMD:0.706398367881774;iRNA_m5C:0.999536710373115 9736 chr6 135523774 135523774 1 + A G rs7762830 135523765 + 135523745 135523785 41 ATCTACCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGC ATCTACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC < 41bp 1 0.568334942381219 1 0.504132747650146 experiment 0.863330115237561 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYB ENSG00000118513 CDS Human protein_coding chr6:135523765 chr6:135523774 nonsynonymous SNV 0.000 1 30 hm5C_associated_SNPs_7000 0 0 0 0 1 Nucleus 1 0.500231643943393 0.991734504699708 0.999536712113215 hm5C_site_9736 DeepMRMD:0.991734504699708;iRNA_m5C:0.999536712113215 9737 chr6 138658392 138658392 1 + A G rs142475183 138658399 + 138658379 138658419 41 ATTGTCAAGAGACATAAGACCGACCAGCCACCCTGGCTGTT ATTGTCAAGAGACGTAAGACCGACCAGCCACCCTGGCTGTT < 41bp 1 0.201957774804064 1 0.119373917579651 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138658399 chr6:138658392 . . 0 14 hm5C_associated_SNPs_7001 0 0 1 0 0 Nucleus 1 0.500231643887419 1 0.999536712225161 hm5C_site_9737 DeepMRMD:1;iRNA_m5C:0.999536712225161 9738 chr6 138659688 138659688 1 + T G rs570418716 138659672 + 138659652 138659692 41 GCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTACT GCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACGTACT < 41bp 1 0.163561699046312 1 0.0884277820587158 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138659672 chr6:138659688 . . 0 37 hm5C_associated_SNPs_7002 0 0 0 0 0 Nucleus 1 0.500231633575353 1 0.999536732849294 hm5C_site_9738 DeepMRMD:1;iRNA_m5C:0.999536732849294 9739 chr6 138659688 138659688 1 + T G rs570418716 138659673 + 138659653 138659693 41 CTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTACTT CTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACGTACTT < 41bp 1 0.458806790346419 1 0.0965245366096497 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138659673 chr6:138659688 . . 0 36 hm5C_associated_SNPs_7003 0 0 0 0 0 Nucleus 1 0.500237307902261 1 0.999525384195477 hm5C_site_9739 DeepMRMD:1;iRNA_m5C:0.999525384195477 9740 chr6 138659688 138659688 1 + T G rs570418716 138659680 + 138659660 138659700 41 CGGTGGCTCACGCCTGTAATCCCAGCACTTACTTTGGGAGG CGGTGGCTCACGCCTGTAATCCCAGCACGTACTTTGGGAGG < 41bp 1 0.22937065917918 1 0.551992237567902 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138659680 chr6:138659688 . . 0 29 hm5C_associated_SNPs_7004 0 0 0 0 0 Nucleus 1 0.500231643921092 0.896015524864196 0.999536712157815 hm5C_site_9740 DeepMRMD:0.896015524864196;iRNA_m5C:0.999536712157815 9741 chr6 138659688 138659688 1 + T G rs570418716 138659681 + 138659661 138659701 41 GGTGGCTCACGCCTGTAATCCCAGCACTTACTTTGGGAGGC GGTGGCTCACGCCTGTAATCCCAGCACGTACTTTGGGAGGC < 41bp 1 0.126377913932591 1 0.232688307762146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138659681 chr6:138659688 . . 0 28 hm5C_associated_SNPs_7005 0 0 0 0 0 Nucleus 1 0.500231307272625 1 0.99953738545475 hm5C_site_9741 DeepMRMD:1;iRNA_m5C:0.99953738545475 9742 chr6 138659688 138659688 1 + T G rs570418716 138659682 + 138659662 138659702 41 GTGGCTCACGCCTGTAATCCCAGCACTTACTTTGGGAGGCC GTGGCTCACGCCTGTAATCCCAGCACGTACTTTGGGAGGCC < 41bp 1 0.501076074251708 1 0.586265861988068 experiment 0.997847851496585 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138659682 chr6:138659688 . . 0 27 hm5C_associated_SNPs_7006 0 0 0 0 0 Nucleus 1 0.500231643921092 0.827468276023864 0.999536712157815 hm5C_site_9742 DeepMRMD:0.827468276023864;iRNA_m5C:0.999536712157815 9743 chr6 138659689 138659689 1 + T C rs539465000 138659672 + 138659652 138659692 41 GCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTACT GCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTCACT < 41bp 1 0.171081654874928 1 0.0523346066474915 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138659672 chr6:138659689 . . 0 38 hm5C_associated_SNPs_7007 0 0 0 0 0 Nucleus 1 0.500231644318517 1 0.999536711362965 hm5C_site_9743 DeepMRMD:1;iRNA_m5C:0.999536711362965 9744 chr6 138659689 138659689 1 + T C rs539465000 138659673 + 138659653 138659693 41 CTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTACTT CTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTCACTT < 41bp 1 0.472173163096796 1 0.108919143676758 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138659673 chr6:138659689 . . 0 37 hm5C_associated_SNPs_7008 0 0 0 0 0 Nucleus 1 0.500335753123697 1 0.999328493752605 hm5C_site_9744 DeepMRMD:1;iRNA_m5C:0.999328493752605 9745 chr6 138659689 138659689 1 + T C rs539465000 138659680 + 138659660 138659700 41 CGGTGGCTCACGCCTGTAATCCCAGCACTTACTTTGGGAGG CGGTGGCTCACGCCTGTAATCCCAGCACTCACTTTGGGAGG < 41bp 1 0.23658941024231 1 0.218111395835876 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138659680 chr6:138659689 . . 0 30 hm5C_associated_SNPs_7009 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_9745 DeepMRMD:1;iRNA_m5C:0.999536712157815 9746 chr6 138659689 138659689 1 + T C rs539465000 138659681 + 138659661 138659701 41 GGTGGCTCACGCCTGTAATCCCAGCACTTACTTTGGGAGGC GGTGGCTCACGCCTGTAATCCCAGCACTCACTTTGGGAGGC < 41bp 1 0.113183153484985 1 0.246206641197205 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138659681 chr6:138659689 . . 0 29 hm5C_associated_SNPs_7010 0 0 0 0 0 Nucleus 1 0.500231643260575 1 0.999536713478849 hm5C_site_9746 DeepMRMD:1;iRNA_m5C:0.999536713478849 9747 chr6 138659689 138659689 1 + T C rs539465000 138659682 + 138659662 138659702 41 GTGGCTCACGCCTGTAATCCCAGCACTTACTTTGGGAGGCC GTGGCTCACGCCTGTAATCCCAGCACTCACTTTGGGAGGCC < 41bp 1 0.555123642942438 1 0.604987978935242 experiment 0.889752714115124 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138659682 chr6:138659689 . . 0 28 hm5C_associated_SNPs_7011 0 0 0 0 0 Nucleus 1 0.500231643921092 0.790024042129516 0.999536712157815 hm5C_site_9747 DeepMRMD:0.790024042129516;iRNA_m5C:0.999536712157815 9748 chr6 138659696 138659696 1 + G A rs117175809 138659680 + 138659660 138659700 41 CGGTGGCTCACGCCTGTAATCCCAGCACTTACTTTGGGAGG CGGTGGCTCACGCCTGTAATCCCAGCACTTACTTTGAGAGG < 41bp 1 0.184129485125644 1 0.316015124320984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138659680 chr6:138659696 . . 0 37 hm5C_associated_SNPs_7012 0 0 0 0 0 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_9748 DeepMRMD:1;iRNA_m5C:0.999536712157812 9749 chr6 138659696 138659696 1 + G A rs117175809 138659681 + 138659661 138659701 41 GGTGGCTCACGCCTGTAATCCCAGCACTTACTTTGGGAGGC GGTGGCTCACGCCTGTAATCCCAGCACTTACTTTGAGAGGC < 41bp 1 0.101360995878894 1 0.313681960105896 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138659681 chr6:138659696 . . 0 36 hm5C_associated_SNPs_7013 0 0 0 0 0 Nucleus 1 0.500231383402393 1 0.999537233195214 hm5C_site_9749 DeepMRMD:1;iRNA_m5C:0.999537233195214 9750 chr6 138659696 138659696 1 + G A rs117175809 138659682 + 138659662 138659702 41 GTGGCTCACGCCTGTAATCCCAGCACTTACTTTGGGAGGCC GTGGCTCACGCCTGTAATCCCAGCACTTACTTTGAGAGGCC < 41bp 1 0.507392613895692 1 0.602092921733856 experiment 0.985214772208616 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 UTR3 Human protein_coding chr6:138659682 chr6:138659696 . . 0 35 hm5C_associated_SNPs_7014 0 0 0 0 0 Nucleus 1 0.500231643921092 0.795814156532288 0.999536712157815 hm5C_site_9750 DeepMRMD:0.795814156532288;iRNA_m5C:0.999536712157815 9751 chr6 138727166 138727166 1 + T G rs140459982 138727165 + 138727145 138727185 41 CGTGGAGCCTGGTTCAGGTCCTTTTAGTGAGTCTACCATTA CGTGGAGCCTGGTTCAGGTCCGTTTAGTGAGTCTACCATTA < 41bp 1 0.111663812360023 1 0.0329959392547607 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138727165 chr6:138727166 synonymous SNV . 0 22 hm5C_associated_SNPs_7017 0 0 1 0 1 Cytosol 1 0.500231643921284 1 0.999536712157432 hm5C_site_9751 DeepMRMD:1;iRNA_m5C:0.999536712157432 9752 chr6 139114113 139114113 1 + A G rs6570282 139114114 + 139114094 139114134 41 ATGTGACTCGCTGTAATTCACCATAACTGGAGGCCTAGGCC ATGTGACTCGCTGTAATTCGCCATAACTGGAGGCCTAGGCC < 41bp 1 0.448731549396602 1 0.281993746757507 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC28A ENSG00000024862 UTR3 Human protein_coding chr6:139114114 chr6:139114113 . . 0 20 hm5C_associated_SNPs_7018 0 0 1 1 0 Ribosome 1 0.50023164392105 1 0.999536712157901 hm5C_site_9752 DeepMRMD:1;iRNA_m5C:0.999536712157901 9753 chr6 143999140 143999140 1 + C G rs577688993 143999136 + 143999116 143999156 41 ATCCGCCGCGCCGGCTGCGGCCGGCCGGGCTGGGAGACCCG ATCCGCCGCGCCGGCTGCGGCCGGGCGGGCTGGGAGACCCG < 41bp 1 0.595129177572158 1 0.50753527879715 experiment 0.809741644855684 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHACTR2 ENSG00000112419 UTR5 Human protein_coding chr6:143999136 chr6:143999140 . . 0 25 hm5C_associated_SNPs_7019 0 0 1 0 0 Cytosol 1 0.500231622678878 0.9849294424057 0.999536754642243 hm5C_site_9753 DeepMRMD:0.9849294424057;iRNA_m5C:0.999536754642243 9754 chr6 144782354 144782354 1 + A G rs147576440 144782344 + 144782324 144782364 41 AATAAACAGAACTGAAGGGCCAACCTGGACATGCATATCTG AATAAACAGAACTGAAGGGCCAACCTGGACGTGCATATCTG < 41bp 1 0.035389626743096 1 0.165154159069061 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144782344 chr6:144782354 nonsynonymous SNV 0.200 0 31 hm5C_associated_SNPs_7020 0 0 1 0 1 Nucleus 1 0.500231655022721 1 0.999536689954558 hm5C_site_9754 DeepMRMD:1;iRNA_m5C:0.999536689954558 9755 chr6 144876008 144876008 1 + C T rs78815593 144875991 + 144875971 144876011 41 TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACTAAA < 41bp 1 0.209443916224626 1 0.266138195991516 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144875991 chr6:144876008 synonymous SNV . 0 38 hm5C_associated_SNPs_7021 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_9755 DeepMRMD:1;iRNA_m5C:0.999536712157815 9756 chr6 145503887 145503887 1 + G A rs147771222 145503885 + 145503865 145503905 41 ATGGTGTAATGGTTAGCACTCTGGGCTTTGAATCCAGCAAT ATGGTGTAATGGTTAGCACTCTAGGCTTTGAATCCAGCAAT < 41bp 1 0.519921193496118 1 0.630822360515594 experiment 0.960157613007763 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTRN;EPM2A ENSG00000152818;ENSG00000221796 intergenic Human other chr6:145503885 chr6:145503887 . . 0 23 hm5C_associated_SNPs_7022 0 0 1 0 0 unknown 1 0.500231643921092 0.738355278968812 0.999536712157815 hm5C_site_9756 DeepMRMD:0.738355278968812;iRNA_m5C:0.999536712157815 9757 chr6 145503887 145503887 1 + G A rs147771222 145503899 + 145503879 145503919 41 AGCACTCTGGGCTTTGAATCCAGCAATCCGAGTTCGAATCT AGCACTCTAGGCTTTGAATCCAGCAATCCGAGTTCGAATCT < 41bp 1 0.672302395910581 1 0.393202483654022 experiment 0.655395208178837 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target UTRN;EPM2A ENSG00000152818;ENSG00000221796 intergenic Human other chr6:145503899 chr6:145503887 . . 0 9 hm5C_associated_SNPs_7023 0 0 1 0 0 unknown 1 0.500231645449588 1 0.999536709100824 hm5C_site_9757 DeepMRMD:1;iRNA_m5C:0.999536709100824 9758 chr6 145503887 145503887 1 + G A rs147771222 145503902 + 145503882 145503922 41 ACTCTGGGCTTTGAATCCAGCAATCCGAGTTCGAATCTTGG ACTCTAGGCTTTGAATCCAGCAATCCGAGTTCGAATCTTGG < 41bp 1 0.0426778749966129 1 0.0819218456745148 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target UTRN;EPM2A ENSG00000152818;ENSG00000221796 intergenic Human other chr6:145503902 chr6:145503887 . . 0 6 hm5C_associated_SNPs_7024 0 0 1 0 0 unknown 1 0.500231643921164 1 0.999536712157671 hm5C_site_9758 DeepMRMD:1;iRNA_m5C:0.999536712157671 9759 chr6 145503887 145503887 1 + G A rs147771222 145503906 + 145503886 145503926 41 TGGGCTTTGAATCCAGCAATCCGAGTTCGAATCTTGGTGGG TAGGCTTTGAATCCAGCAATCCGAGTTCGAATCTTGGTGGG < 41bp 1 0.374959269361906 1 0.914850056171417 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target UTRN;EPM2A ENSG00000152818;ENSG00000221796 intergenic Human other chr6:145503906 chr6:145503887 . . 0 2 hm5C_associated_SNPs_7025 0 0 1 0 0 unknown 1 0.500231643921086 0.170299887657166 0.999536712157829 hm5C_site_9759 DeepMRMD:0.170299887657166;iRNA_m5C:0.999536712157829 9760 chr6 145503887 145503887 1 + G A rs147771222 145503907 + 145503887 145503927 41 GGGCTTTGAATCCAGCAATCCGAGTTCGAATCTTGGTGGGA AGGCTTTGAATCCAGCAATCCGAGTTCGAATCTTGGTGGGA < 41bp 1 0.273043058720446 1 0.467579066753387 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target UTRN;EPM2A ENSG00000152818;ENSG00000221796 intergenic Human other chr6:145503907 chr6:145503887 . . 0 1 hm5C_associated_SNPs_7026 0 0 1 0 0 unknown 1 0.500231643920499 1 0.999536712159002 hm5C_site_9760 DeepMRMD:1;iRNA_m5C:0.999536712159002 9761 chr6 145503907 145503907 1 + C G rs117561287 145503902 + 145503882 145503922 41 ACTCTGGGCTTTGAATCCAGCAATCCGAGTTCGAATCTTGG ACTCTGGGCTTTGAATCCAGCAATCGGAGTTCGAATCTTGG < 41bp 1 0.0674559602682656 1 0.0803972780704498 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target UTRN;EPM2A ENSG00000152818;ENSG00000221796 intergenic Human other chr6:145503902 chr6:145503907 . . 0 26 hm5C_associated_SNPs_7028 0 0 1 0 0 unknown 1 0.500231623491533 1 0.999536753016934 hm5C_site_9761 DeepMRMD:1;iRNA_m5C:0.999536753016934 9762 chr6 147886893 147886893 1 + G A rs141935820 147886882 + 147886862 147886902 41 CTGGGATTACAGGCGTGAGCCATCACACCCGGCCTGGATGC CTGGGATTACAGGCGTGAGCCATCACACCCGACCTGGATGC < 41bp 1 0.495354853983361 1 0.486457377672195 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD5 ENSG00000203727 UTR3 Human protein_coding chr6:147886882 chr6:147886893 . . 0 32 hm5C_associated_SNPs_7030 0 0 0 0 0 Ribosome 1 0.500231655648831 1 0.999536688702337 hm5C_site_9762 DeepMRMD:1;iRNA_m5C:0.999536688702337 9763 chr6 148865771 148865771 1 + A G rs61996300 148865756 + 148865736 148865776 41 CTCTCAGGGCAGGCGCCTGGCAGCCCACCAAGCACAAGGCC CTCTCAGGGCAGGCGCCTGGCAGCCCACCAAGCACGAGGCC < 41bp 1 0.426871497433461 1 0.473089665174484 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148865756 chr6:148865771 synonymous SNV . 0 36 hm5C_associated_SNPs_7031 0 0 1 0 0 Cytosol 1 0.500231644359003 1 0.999536711281994 hm5C_site_9763 DeepMRMD:1;iRNA_m5C:0.999536711281994 9764 chr6 148865771 148865771 1 + A G rs61996300 148865775 + 148865755 148865795 41 GCAGCCCACCAAGCACAAGGCCGCCCCCCTGGCTCTCAGAG GCAGCCCACCAAGCACGAGGCCGCCCCCCTGGCTCTCAGAG < 41bp 1 0.0873318851200787 1 0.0666749775409698 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148865775 chr6:148865771 synonymous SNV . 0 17 hm5C_associated_SNPs_7032 0 0 1 0 0 Cytosol 1 0.500231643921611 1 0.999536712156778 hm5C_site_9764 DeepMRMD:1;iRNA_m5C:0.999536712156778 9765 chr6 149731747 149731747 1 + A G rs578100209 149731745 + 149731725 149731765 41 TACTTTGCCCTCATGAGTTCCAATGTTGTGTGAAGACAGGC TACTTTGCCCTCATGAGTTCCAGTGTTGTGTGAAGACAGGC < 41bp 1 0.243333816989139 1 0.136009931564331 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAB2 ENSG00000055208 UTR3 Human protein_coding chr6:149731745 chr6:149731747 . . 0 23 hm5C_associated_SNPs_7033 0 0 1 1 0 Cytosol 1 0.500231287625866 1 0.999537424748269 hm5C_site_9765 DeepMRMD:1;iRNA_m5C:0.999537424748269 9766 chr6 149915317 149915317 1 + G A rs530609591 149915316 + 149915296 149915336 41 ATGGCCTTTGCCATCACTGCCGTTAAGGGTGTGGGCCGAAG ATGGCCTTTGCCATCACTGCCATTAAGGGTGTGGGCCGAAG < 41bp 1 0.364677553288344 1 0.054019421339035 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS18P9 ENSG00000220848 ncRNA_exonic Human processed_pseudogene chr6:149915316 chr6:149915317 . . 0 22 hm5C_associated_SNPs_7034 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9766 DeepMRMD:1;iRNA_m5C:0.999536712157815 9767 chr6 149915332 149915332 1 + C T rs73781245 149915316 + 149915296 149915336 41 ATGGCCTTTGCCATCACTGCCGTTAAGGGTGTGGGCCGAAG ATGGCCTTTGCCATCACTGCCGTTAAGGGTGTGGGCTGAAG < 41bp 1 0.385807185382629 1 0.112474232912064 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS18P9 ENSG00000220848 ncRNA_exonic Human processed_pseudogene chr6:149915316 chr6:149915332 . . 0 37 hm5C_associated_SNPs_7035 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9767 DeepMRMD:1;iRNA_m5C:0.999536712157815 9768 chr6 150131820 150131820 1 + C T rs77141358 150131808 + 150131788 150131828 41 TAAAATTACAGTGGATTGCTCATCTCAGTCCTCAAAGCTTT TAAAATTACAGTGGATTGCTCATCTCAGTCCTTAAAGCTTT < 41bp 1 0.146055284064568 1 0.0587822794914246 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCMT1 ENSG00000120265 UTR3 Human protein_coding chr6:150131808 chr6:150131820 . . 0 33 hm5C_associated_SNPs_7037 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9768 DeepMRMD:1;iRNA_m5C:0.999536712157815 9769 chr6 151186866 151186866 1 + G C rs191863790 151186861 + 151186841 151186881 41 GAAGCGCCAGGTCCTTCCCGCCGCCGCCGCCGCCGCCGCCG GAAGCGCCAGGTCCTTCCCGCCGCCCCCGCCGCCGCCGCCG < 41bp 1 0.368824484695681 1 0.132445901632309 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTHFD1L ENSG00000120254 UTR5 Human protein_coding chr6:151186861 chr6:151186866 . . 0 26 hm5C_associated_SNPs_7038 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9769 DeepMRMD:1;iRNA_m5C:0.999536712157815 9770 chr6 151186866 151186866 1 + G C rs191863790 151186862 + 151186842 151186882 41 AAGCGCCAGGTCCTTCCCGCCGCCGCCGCCGCCGCCGCCGC AAGCGCCAGGTCCTTCCCGCCGCCCCCGCCGCCGCCGCCGC < 41bp 1 0.498616126324407 1 0.779989302158356 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MTHFD1L ENSG00000120254 UTR5 Human protein_coding chr6:151186862 chr6:151186866 . . 0 25 hm5C_associated_SNPs_7039 0 0 1 0 0 Cytosol 1 0.500231643921092 0.440021395683288 0.999536712157815 hm5C_site_9770 DeepMRMD:0.440021395683288;iRNA_m5C:0.999536712157815 9771 chr6 151186866 151186866 1 + G C rs191863790 151186864 + 151186844 151186884 41 GCGCCAGGTCCTTCCCGCCGCCGCCGCCGCCGCCGCCGCCT GCGCCAGGTCCTTCCCGCCGCCCCCGCCGCCGCCGCCGCCT < 41bp 1 0.341547987621974 1 0.105486422777176 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MTHFD1L ENSG00000120254 UTR5 Human protein_coding chr6:151186864 chr6:151186866 . . 0 23 hm5C_associated_SNPs_7040 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9771 DeepMRMD:1;iRNA_m5C:0.999536712157815 9772 chr6 151186866 151186866 1 + G C rs191863790 151186865 + 151186845 151186885 41 CGCCAGGTCCTTCCCGCCGCCGCCGCCGCCGCCGCCGCCTG CGCCAGGTCCTTCCCGCCGCCCCCGCCGCCGCCGCCGCCTG < 41bp 1 0.478379380446014 1 0.294333398342133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MTHFD1L ENSG00000120254 UTR5 Human protein_coding chr6:151186865 chr6:151186866 . . 0 22 hm5C_associated_SNPs_7041 0 0 1 0 0 Cytosol 1 0.500231643921022 1 0.999536712157957 hm5C_site_9772 DeepMRMD:1;iRNA_m5C:0.999536712157957 9773 chr6 151186866 151186866 1 + G C rs191863790 151186867 + 151186847 151186887 41 CCAGGTCCTTCCCGCCGCCGCCGCCGCCGCCGCCGCCTGCT CCAGGTCCTTCCCGCCGCCCCCGCCGCCGCCGCCGCCTGCT < 41bp 1 0.374849678317926 1 0.199147552251816 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MTHFD1L ENSG00000120254 UTR5 Human protein_coding chr6:151186867 chr6:151186866 . . 0 20 hm5C_associated_SNPs_7042 0 0 1 0 0 Cytosol 1 0.50023164393089 1 0.99953671213822 hm5C_site_9773 DeepMRMD:1;iRNA_m5C:0.99953671213822 9774 chr6 151186866 151186866 1 + G C rs191863790 151186870 + 151186850 151186890 41 GGTCCTTCCCGCCGCCGCCGCCGCCGCCGCCGCCTGCTCCC GGTCCTTCCCGCCGCCCCCGCCGCCGCCGCCGCCTGCTCCC < 41bp 1 0.495739252452064 1 0.25918585062027 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MTHFD1L ENSG00000120254 UTR5 Human protein_coding chr6:151186870 chr6:151186866 . . 0 17 hm5C_associated_SNPs_7044 0 0 1 0 0 Cytosol 1 0.50023164392108 1 0.99953671215784 hm5C_site_9774 DeepMRMD:1;iRNA_m5C:0.99953671215784 9775 chr6 151186866 151186866 1 + G C rs191863790 151186873 + 151186853 151186893 41 CCTTCCCGCCGCCGCCGCCGCCGCCGCCGCCTGCTCCCCTG CCTTCCCGCCGCCCCCGCCGCCGCCGCCGCCTGCTCCCCTG < 41bp 1 0.559607274828337 1 0.297733247280121 experiment 0.880785450343326 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MTHFD1L ENSG00000120254 UTR5 Human protein_coding chr6:151186873 chr6:151186866 . . 0 14 hm5C_associated_SNPs_7046 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_9775 DeepMRMD:1;iRNA_m5C:0.999536712157816 9776 chr6 151186866 151186866 1 + G C rs191863790 151186876 + 151186856 151186896 41 TCCCGCCGCCGCCGCCGCCGCCGCCGCCTGCTCCCCTGGCA TCCCGCCGCCCCCGCCGCCGCCGCCGCCTGCTCCCCTGGCA < 41bp 1 0.445871938639487 1 0.269491761922836 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MTHFD1L ENSG00000120254 UTR5 Human protein_coding chr6:151186876 chr6:151186866 . . 0 11 hm5C_associated_SNPs_7048 0 0 1 0 0 Cytosol 1 0.500231643878995 1 0.99953671224201 hm5C_site_9776 DeepMRMD:1;iRNA_m5C:0.99953671224201 9777 chr6 151186866 151186866 1 + G C rs191863790 151186877 + 151186857 151186897 41 CCCGCCGCCGCCGCCGCCGCCGCCGCCTGCTCCCCTGGCAC CCCGCCGCCCCCGCCGCCGCCGCCGCCTGCTCCCCTGGCAC < 41bp 1 0.696073131666808 1 0.708427846431732 experiment 0.607853736666383 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MTHFD1L ENSG00000120254 UTR5 Human protein_coding chr6:151186877 chr6:151186866 . . 0 10 hm5C_associated_SNPs_7049 0 0 1 0 0 Cytosol 1 0.500231643920133 0.583144307136536 0.999536712159733 hm5C_site_9777 DeepMRMD:0.583144307136536;iRNA_m5C:0.999536712159733 9778 chr6 151186866 151186866 1 + G C rs191863790 151186879 + 151186859 151186899 41 CGCCGCCGCCGCCGCCGCCGCCGCCTGCTCCCCTGGCACGC CGCCGCCCCCGCCGCCGCCGCCGCCTGCTCCCCTGGCACGC < 41bp 1 0.369723069592713 1 0.659254670143127 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MTHFD1L ENSG00000120254 UTR5 Human protein_coding chr6:151186879 chr6:151186866 . . 0 8 hm5C_associated_SNPs_7050 0 0 1 0 0 Cytosol 1 0.500231643921044 0.681490659713746 0.999536712157913 hm5C_site_9778 DeepMRMD:0.681490659713746;iRNA_m5C:0.999536712157913 9779 chr6 151186866 151186866 1 + G C rs191863790 151186880 + 151186860 151186900 41 GCCGCCGCCGCCGCCGCCGCCGCCTGCTCCCCTGGCACGCG GCCGCCCCCGCCGCCGCCGCCGCCTGCTCCCCTGGCACGCG < 41bp 1 0.635937672275411 1 0.704495370388031 experiment 0.728124655449178 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MTHFD1L ENSG00000120254 UTR5 Human protein_coding chr6:151186880 chr6:151186866 . . 0 7 hm5C_associated_SNPs_7051 0 0 1 0 0 Cytosol 1 0.50023164392109 0.591009259223938 0.99953671215782 hm5C_site_9779 DeepMRMD:0.591009259223938;iRNA_m5C:0.99953671215782 9780 chr6 151677474 151677474 1 + A G rs78766610 151677467 + 151677447 151677487 41 CTCTGAAATTGGTCACTTTCCTATTACACGGAGTGTGCTAA CTCTGAAATTGGTCACTTTCCTATTACGCGGAGTGTGCTAA < 41bp 1 0.0931643547800167 1 0.0861289203166962 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP12 ENSG00000131016 UTR3 Human protein_coding chr6:151677467 chr6:151677474 . . 0 28 hm5C_associated_SNPs_7053 0 0 1 0 0 Ribosome 1 0.500231643978414 1 0.999536712043173 hm5C_site_9780 DeepMRMD:1;iRNA_m5C:0.999536712043173 9781 chr6 155129280 155129280 1 + A T rs140506252 155129276 + 155129256 155129296 41 CACCATCACAAGGGAGTAGTCAGCAGCATTTTCTTGAACCT CACCATCACAAGGGAGTAGTCAGCTGCATTTTCTTGAACCT < 41bp 1 0.595113407646407 1 0.769823253154755 experiment 0.809773184707186 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155129276 chr6:155129280 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_7054 0 0 1 0 2 Nucleus 1 0.500231616536438 0.46035349369049 0.999536766927124 hm5C_site_9781 DeepMRMD:0.46035349369049;iRNA_m5C:0.999536766927124 9782 chr6 155153307 155153307 1 + G A rs34802160 155153288 + 155153268 155153308 41 CTGGAATATTGGGAATACAGCCACCCAGTGTGTCAAATAGT CTGGAATATTGGGAATACAGCCACCCAGTGTGTCAAATAAT < 41bp 1 0.0301864920095614 1 0.0485503077507019 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155153288 chr6:155153307 nonsynonymous SNV 0.985 0 40 hm5C_associated_SNPs_7055 0 0 1 0 0 Nucleus 1 0.500231643906823 1 0.999536712186355 hm5C_site_9782 DeepMRMD:1;iRNA_m5C:0.999536712186355 9783 chr6 157802916 157802916 1 + G C rs529370775 157802928 + 157802908 157802948 41 TTGTCGCCGAGCCGGGAGCCCGTGTAGGGGCCGCGGCGCCG TTGTCGCCCAGCCGGGAGCCCGTGTAGGGGCCGCGGCGCCG < 41bp 1 0.667522063852506 1 0.379152536392212 experiment 0.664955872294989 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZDHHC14 ENSG00000175048 UTR5 Human protein_coding chr6:157802928 chr6:157802916 . . 0 9 hm5C_associated_SNPs_7056 0 0 1 0 0 chromatin 1 0.500231644631274 1 0.999536710737452 hm5C_site_9783 DeepMRMD:1;iRNA_m5C:0.999536710737452 9784 chr6 158364714 158364714 1 + A G rs1043863 158364712 + 158364692 158364732 41 GAGAATTTTGTGGCTTTGGTCCAACGGGTGAGTGGCTGTGC GAGAATTTTGTGGCTTTGGTCCGACGGGTGAGTGGCTGTGC < 41bp 1 0.286023394340242 1 0.727732598781586 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX9 ENSG00000130340 UTR3 Human protein_coding chr6:158364712 chr6:158364714 . . 0 23 hm5C_associated_SNPs_7057 0 0 1 0 0 Ribosome 1 0.500231644162984 0.544534802436828 0.999536711674032 hm5C_site_9784 DeepMRMD:0.544534802436828;iRNA_m5C:0.999536711674032 9785 chr6 158364714 158364714 1 + A G rs1043863 158364713 + 158364693 158364733 41 AGAATTTTGTGGCTTTGGTCCAACGGGTGAGTGGCTGTGCG AGAATTTTGTGGCTTTGGTCCGACGGGTGAGTGGCTGTGCG < 41bp 1 0.575192757648762 1 0.742985308170319 experiment 0.849614484702475 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX9 ENSG00000130340 UTR3 Human protein_coding chr6:158364713 chr6:158364714 . . 0 22 hm5C_associated_SNPs_7058 0 0 1 0 0 Ribosome 1 0.500231643921092 0.514029383659362 0.999536712157815 hm5C_site_9785 DeepMRMD:0.514029383659362;iRNA_m5C:0.999536712157815 9786 chr6 158519816 158519816 1 + G A rs2477813 158519797 + 158519777 158519817 41 TATTTTGTTCCTGCTGTTCTCTAACATGGTGCAGTTCACGC TATTTTGTTCCTGCTGTTCTCTAACATGGTGCAGTTCACAC < 41bp 1 0.264736061964743 1 0.351698815822601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYNJ2 ENSG00000078269 UTR3 Human protein_coding chr6:158519797 chr6:158519816 . . 0 40 hm5C_associated_SNPs_7059 0 0 1 0 0 Cytosol 1 0.500231644460538 1 0.999536711078924 hm5C_site_9786 DeepMRMD:1;iRNA_m5C:0.999536711078924 9787 chr6 158870081 158870081 1 + A G rs705956 158870090 + 158870070 158870110 41 TGCCACGGCAGAATGCTGGCCCACGTCCTCTTGCACGAGTC TGCCACGGCAGGATGCTGGCCCACGTCCTCTTGCACGAGTC < 41bp 1 0.177871843855107 1 0.105227380990982 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158870090 chr6:158870081 synonymous SNV . 0 12 hm5C_associated_SNPs_7060 0 0 1 0 1 Ribosome 1 0.500101589233037 1 0.999796821533927 hm5C_site_9787 DeepMRMD:1;iRNA_m5C:0.999796821533927 9788 chr6 160485839 160485839 1 + G A rs571049189 160485837 + 160485817 160485857 41 TGCCTCTTAACTTTTTTAGCCAGTATTTCTAAAGGAGACTT TGCCTCTTAACTTTTTTAGCCAATATTTCTAAAGGAGACTT < 41bp 1 0.0450426597751898 1 0.0787362456321716 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160485837 chr6:160485839 nonsynonymous SNV 0.329 3 23 hm5C_associated_SNPs_7061 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643957014 1 0.999536712085972 hm5C_site_9788 DeepMRMD:1;iRNA_m5C:0.999536712085972 9789 chr6 160494409 160494409 1 + A G rs629849 160494408 + 160494388 160494428 41 TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT TTCGTGTGCAGGCCTGAGGCCGGGCCAACCAATAGGCCCAT < 41bp 1 0.386050489709849 1 0.908053994178772 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494408 chr6:160494409 nonsynonymous SNV 0.492 0 22 hm5C_associated_SNPs_7062 0 1 1 0 1 Endoplasmic reticulum 1 0.500231574749859 0.183892011642456 0.999536850500282 hm5C_site_9789 DeepMRMD:0.183892011642456;iRNA_m5C:0.999536850500282 9790 chr6 160526686 160526686 1 + T C rs78039413 160526684 + 160526664 160526704 41 GTGTCCCCTGAGTTGGAGCTCATTCTGTCTCTTTTCTCTTT GTGTCCCCTGAGTTGGAGCTCACTCTGTCTCTTTTCTCTTT < 41bp 1 0.121135738863139 1 0.073687344789505 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control IGF2R ENSG00000197081 UTR3 Human protein_coding chr6:160526684 chr6:160526686 . . 0 23 hm5C_associated_SNPs_7063 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164395049 1 0.999536712099019 hm5C_site_9790 DeepMRMD:1;iRNA_m5C:0.999536712099019 9791 chr6 161510472 161510472 1 + C T rs202168620 161510492 + 161510472 161510512 41 CGGTCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC TGGTCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC < 41bp 1 0.687422588541174 1 0.525712907314301 experiment 0.625154822917653 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161510492 chr6:161510472 nonsynonymous SNV 0.994 3 1 hm5C_associated_SNPs_7064 0 0 1 0 1 Cytosol 1 0.500231417337867 0.948574185371398 0.999537165324266 hm5C_site_9791 DeepMRMD:0.948574185371398;iRNA_m5C:0.999537165324266 9792 chr6 168314939 168314939 1 + G A rs149079362 168314938 + 168314918 168314958 41 AGCAAGACCGAGACCTTAGTCGGATCACACTGGATGCTCAA AGCAAGACCGAGACCTTAGTCAGATCACACTGGATGCTCAA < 41bp 1 0.324134559758107 1 0.886480808258057 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168314938 chr6:168314939 nonsynonymous SNV 0.980 2 22 hm5C_associated_SNPs_7066 0 0 1 0 2 unknown 1 0.500236859072378 0.227038383483886 0.999526281855243 hm5C_site_9792 DeepMRMD:0.227038383483886;iRNA_m5C:0.999526281855243 9793 chr6 168352330 168352330 1 + C T rs76831621 168352327 + 168352307 168352347 41 TGGTATGAGAAGGAGAAGGCCCGCCTGGAGGAGGAGCGGGA TGGTATGAGAAGGAGAAGGCCCGTCTGGAGGAGGAGCGGGA < 41bp 1 0.0494299079381158 1 0.159502625465393 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout AFDN ENSG00000130396 CDS Human protein_coding chr6:168352327 chr6:168352330 synonymous SNV . 0 24 hm5C_associated_SNPs_7067 0 0 1 0 0 unknown 1 0.500164482063243 1 0.999671035873515 hm5C_site_9793 DeepMRMD:1;iRNA_m5C:0.999671035873515 9794 chr6 168352445 168352445 1 + C A rs75845754 168352459 + 168352439 168352479 41 ATGAAGCCCGAAAAGCCTTCCACACTCCAGCGGCCACAGGA ATGAAGACCGAAAAGCCTTCCACACTCCAGCGGCCACAGGA < 41bp 1 0.15740830500801 1 0.0294184386730194 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168352459 chr6:168352445 nonsynonymous SNV 0.473 1 7 hm5C_associated_SNPs_7068 0 0 1 0 0 unknown 1 0.500231627966416 1 0.999536744067169 hm5C_site_9794 DeepMRMD:1;iRNA_m5C:0.999536744067169 9795 chr6 168352447 168352447 1 + C G rs199757028 168352459 + 168352439 168352479 41 ATGAAGCCCGAAAAGCCTTCCACACTCCAGCGGCCACAGGA ATGAAGCCGGAAAAGCCTTCCACACTCCAGCGGCCACAGGA < 41bp 1 0.166734781625149 1 0.0513554513454437 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168352459 chr6:168352447 synonymous SNV . 0 9 hm5C_associated_SNPs_7069 0 0 1 0 0 unknown 1 0.50023163599031 1 0.99953672801938 hm5C_site_9795 DeepMRMD:1;iRNA_m5C:0.99953672801938 9796 chr6 168363172 168363172 1 + G A rs141410347 168363160 + 168363140 168363180 41 CAGCAGTTAGAAGAGATGCGCAAGCGGGAAGCGGAAGACCG CAGCAGTTAGAAGAGATGCGCAAGCGGGAAGCAGAAGACCG < 41bp 1 0.299628767772108 1 0.437481880187988 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363160 chr6:168363172 synonymous SNV . 0 33 hm5C_associated_SNPs_7070 0 0 1 0 3 unknown 1 0.500231646141938 1 0.999536707716124 hm5C_site_9796 DeepMRMD:1;iRNA_m5C:0.999536707716124 9797 chr6 170202712 170202712 1 + C A rs566506749 170202713 + 170202693 170202733 41 AGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG AGTGGCTCACGCCTGTAATACCAGCACTTTGGGAGGCCGAG < 41bp 1 0.148641165328736 1 0.129204541444778 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LINC00574 ENSG00000231690 ncRNA_exonic Human lincRNA chr6:170202713 chr6:170202712 . . 0 20 hm5C_associated_SNPs_7071 0 0 0 0 0 unknown 1 0.500231630158186 1 0.999536739683629 hm5C_site_9797 DeepMRMD:1;iRNA_m5C:0.999536739683629 9798 chr6 170202712 170202712 1 + C A rs566506749 170202717 + 170202697 170202737 41 GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGG GCTCACGCCTGTAATACCAGCACTTTGGGAGGCCGAGGTGG < 41bp 1 0.272105455575499 1 0.0458111166954041 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LINC00574 ENSG00000231690 ncRNA_exonic Human lincRNA chr6:170202717 chr6:170202712 . . 0 16 hm5C_associated_SNPs_7072 0 0 0 0 0 unknown 1 0.500231644393721 1 0.999536711212558 hm5C_site_9798 DeepMRMD:1;iRNA_m5C:0.999536711212558 9799 chr6 170202712 170202712 1 + C A rs566506749 170202719 + 170202699 170202739 41 TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGT TCACGCCTGTAATACCAGCACTTTGGGAGGCCGAGGTGGGT < 41bp 1 0.170724067250334 1 0.0993897616863251 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LINC00574 ENSG00000231690 ncRNA_exonic Human lincRNA chr6:170202719 chr6:170202712 . . 0 14 hm5C_associated_SNPs_7073 0 0 0 0 0 unknown 1 0.500231644137207 1 0.999536711725587 hm5C_site_9799 DeepMRMD:1;iRNA_m5C:0.999536711725587 9800 chr6 170202712 170202712 1 + C A rs566506749 170202729 + 170202709 170202749 41 AATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTG AATACCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTG < 41bp 1 0.687325275822057 1 0.841962397098541 experiment 0.625349448355886 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LINC00574 ENSG00000231690 ncRNA_exonic Human lincRNA chr6:170202729 chr6:170202712 . . 0 4 hm5C_associated_SNPs_7074 0 0 0 0 0 unknown 1 0.500231643921093 0.316075205802918 0.999536712157815 hm5C_site_9800 DeepMRMD:0.316075205802918;iRNA_m5C:0.999536712157815 9801 chr7 286402 286402 1 + A G rs141256626 286404 + 286384 286424 41 AACGAGGGAGCAGGAGACACCCCCTGACTTTTTTTATTTCT AACGAGGGAGCAGGAGACGCCCCCTGACTTTTTTTATTTCT < 41bp 1 0.0705584019624316 1 0.160238087177277 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM20C ENSG00000177706 CDS Human protein_coding chr7:286404 chr7:286402 synonymous SNV . 0 19 hm5C_associated_SNPs_7077 1 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9801 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 9802 chr7 300423 300423 1 + G A rs550699777 300422 + 300402 300442 41 CTTTCTCCTTCCTGGGGCCTCGGCTCCTGGAGGGCTGGAGG CTTTCTCCTTCCTGGGGCCTCAGCTCCTGGAGGGCTGGAGG < 41bp 1 0.525046085357211 1 0.571439623832703 experiment 0.949907829285578 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM20C ENSG00000177706 UTR3 Human protein_coding chr7:300422 chr7:300423 . . 0 22 hm5C_associated_SNPs_7078 0 0 1 0 0 Ribosome 1 0.50023164400649 0.857120752334594 0.99953671198702 hm5C_site_9802 DeepMRMD:0.857120752334594;iRNA_m5C:0.99953671198702 9803 chr7 819695 819695 1 + A G rs61755909 819711 + 819691 819731 41 TCCTACTATCAGAGCAGTGTCCAGTACCTGTACCGAGAGTT TCCTGCTATCAGAGCAGTGTCCAGTACCTGTACCGAGAGTT < 41bp 1 0.157136086986258 1 0.209117233753204 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:819711 chr7:819695 nonsynonymous SNV 0.027 0 5 hm5C_associated_SNPs_7079 1 0 1 0 1 Ribosome 1 0.500231540595682 1 0.999536918808636 hm5C_site_9803 DeepMRMD:1;iRNA_m5C:0.999536918808636 Primary ciliary dyskinesia Primary ciliary dyskinesia 9804 chr7 897492 897492 1 + A G rs10950789 897491 + 897471 897511 41 TGGTGAGCAGCTCCTGCCCACAGTCGAGCACCTCCAGCTGG TGGTGAGCAGCTCCTGCCCACGGTCGAGCACCTCCAGCTGG < 41bp 1 0.311421575820556 1 0.565121948719025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:897491 chr7:897492 synonymous SNV . 0 22 hm5C_associated_SNPs_7080 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 0.86975610256195 0.999536712157815 hm5C_site_9804 DeepMRMD:0.86975610256195;iRNA_m5C:0.999536712157815 9805 chr7 897496 897496 1 + G A rs59910530 897491 + 897471 897511 41 TGGTGAGCAGCTCCTGCCCACAGTCGAGCACCTCCAGCTGG TGGTGAGCAGCTCCTGCCCACAGTCAAGCACCTCCAGCTGG < 41bp 1 0.212607986482081 1 0.44044092297554 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:897491 chr7:897496 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_7081 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643919606 1 0.999536712160788 hm5C_site_9805 DeepMRMD:1;iRNA_m5C:0.999536712160788 9806 chr7 930608 930608 1 + G A rs11543223 930607 + 930587 930627 41 GTATCATTTTCTGCACTCAGCGGACGGGGAGGGCTGTGCCA GTATCATTTTCTGCACTCAGCAGACGGGGAGGGCTGTGCCA < 41bp 1 0.411891772208325 1 0.690922856330872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GET4 ENSG00000239857 CDS Human protein_coding chr7:930607 chr7:930608 synonymous SNV . 0 22 hm5C_associated_SNPs_7082 0 0 1 0 2 Cytosol 1 0.500232035738154 0.618154287338256 0.999535928523693 hm5C_site_9806 DeepMRMD:0.618154287338256;iRNA_m5C:0.999535928523693 9807 chr7 1126659 1126659 1 + G A rs3808351 1126671 + 1126651 1126691 41 CTCGCTCTGCCCTCATGGGGCGGCCATCGGTTCCCGAAGCG CTCGCTCTACCCTCATGGGGCGGCCATCGGTTCCCGAAGCG < 41bp 1 0.189097822577924 1 0.309059500694275 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPER1 ENSG00000164850 UTR5 Human protein_coding chr7:1126671 chr7:1126659 . . 0 9 hm5C_associated_SNPs_7083 0 0 0 0 0 Cytosol 1 0.500231643793316 1 0.999536712413368 hm5C_site_9807 DeepMRMD:1;iRNA_m5C:0.999536712413368 9808 chr7 1126843 1126843 1 + C T rs556540795 1126863 + 1126843 1126883 41 CCCTGGTGGGGAAGAGGCCACCAACATCTGGACGGCAGGTA TCCTGGTGGGGAAGAGGCCACCAACATCTGGACGGCAGGTA < 41bp 1 0.0995395239553868 1 0.454395294189453 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPER1 ENSG00000164850 UTR5 Human protein_coding chr7:1126863 chr7:1126843 . . 0 1 hm5C_associated_SNPs_7084 0 0 1 0 1 Cytosol 1 0.5002316439211 1 0.9995367121578 hm5C_site_9808 DeepMRMD:1;iRNA_m5C:0.9995367121578 9809 chr7 1126876 1126876 1 + G A rs10269151 1126863 + 1126843 1126883 41 CCCTGGTGGGGAAGAGGCCACCAACATCTGGACGGCAGGTA CCCTGGTGGGGAAGAGGCCACCAACATCTGGACAGCAGGTA < 41bp 1 0.0925816295466481 1 0.355671226978302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPER1 ENSG00000164850 UTR5 Human protein_coding chr7:1126863 chr7:1126876 . . 0 34 hm5C_associated_SNPs_7085 0 0 1 0 1 Cytosol 1 0.500231643914767 1 0.999536712170465 hm5C_site_9809 DeepMRMD:1;iRNA_m5C:0.999536712170465 9810 chr7 1582595 1582595 1 + G A rs548143137 1582600 + 1582580 1582620 41 CCCTGCCCCGTCCCTGCGGCCACCACCTAATTTATTGCCGT CCCTGCCCCGTCCCTACGGCCACCACCTAATTTATTGCCGT < 41bp 1 0.421063116771239 1 0.474150121212006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAFK;TMEM184A ENSG00000164855;ENSG00000198517 UTR3 Human other chr7:1582600 chr7:1582595 . . 0 16 hm5C_associated_SNPs_7086 0 0 1 0 0 unknown 1 0.500231643921086 1 0.999536712157828 hm5C_site_9810 DeepMRMD:1;iRNA_m5C:0.999536712157828 9811 chr7 1582604 1582604 1 + A G rs1044529 1582600 + 1582580 1582620 41 CCCTGCCCCGTCCCTGCGGCCACCACCTAATTTATTGCCGT CCCTGCCCCGTCCCTGCGGCCACCGCCTAATTTATTGCCGT < 41bp 1 0.334252565429889 1 0.420270949602127 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAFK;TMEM184A ENSG00000164855;ENSG00000198517 UTR3 Human other chr7:1582600 chr7:1582604 . . 0 25 hm5C_associated_SNPs_7087 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9811 DeepMRMD:1;iRNA_m5C:0.999536712157815 9812 chr7 1582619 1582619 1 + G A rs532461313 1582600 + 1582580 1582620 41 CCCTGCCCCGTCCCTGCGGCCACCACCTAATTTATTGCCGT CCCTGCCCCGTCCCTGCGGCCACCACCTAATTTATTGCCAT < 41bp 1 0.446268610263037 1 0.540032744407654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAFK;TMEM184A ENSG00000164855;ENSG00000198517 UTR3 Human other chr7:1582600 chr7:1582619 . . 0 40 hm5C_associated_SNPs_7088 0 0 1 0 0 unknown 1 0.500231643921038 0.919934511184692 0.999536712157925 hm5C_site_9812 DeepMRMD:0.919934511184692;iRNA_m5C:0.999536712157925 9813 chr7 2290668 2290668 1 + C G rs141118084 2290655 + 2290635 2290675 41 AGCGGGAGCCCAGGGCAGCCCCTGGGCAGGAGACGTGGCTG AGCGGGAGCCCAGGGCAGCCCCTGGGCAGGAGAGGTGGCTG < 41bp 1 0.682511711946079 1 0.419258862733841 experiment 0.634976576107843 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUDT1 ENSG00000106268 UTR3 Human protein_coding chr7:2290655 chr7:2290668 . . 0 34 hm5C_associated_SNPs_7089 0 0 1 0 0 Ribosome 1 0.500231643923077 1 0.999536712153845 hm5C_site_9813 DeepMRMD:1;iRNA_m5C:0.999536712153845 9814 chr7 2290672 2290672 1 + G T rs35573651 2290655 + 2290635 2290675 41 AGCGGGAGCCCAGGGCAGCCCCTGGGCAGGAGACGTGGCTG AGCGGGAGCCCAGGGCAGCCCCTGGGCAGGAGACGTGTCTG < 41bp 1 0.681069593070925 1 0.493078917264938 experiment 0.637860813858151 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUDT1 ENSG00000106268 UTR3 Human protein_coding chr7:2290655 chr7:2290672 . . 0 38 hm5C_associated_SNPs_7090 0 0 1 0 0 Ribosome 1 0.500231658153989 1 0.999536683692022 hm5C_site_9814 DeepMRMD:1;iRNA_m5C:0.999536683692022 9815 chr7 2394934 2394934 1 + G C rs185762794 2394930 + 2394910 2394950 41 CAGCCGGGCCCAGGCGGTGTCCGAGGACGCGGGAGGAAACG CAGCCGGGCCCAGGCGGTGTCCGACGACGCGGGAGGAAACG < 41bp 1 0.337266109071425 1 0.357235491275787 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2394930 chr7:2394934 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_7091 0 0 1 0 1 Ribosome 1 0.500223291352838 1 0.999553417294324 hm5C_site_9815 DeepMRMD:1;iRNA_m5C:0.999553417294324 9816 chr7 2394991 2394991 1 + C T rs11551167 2395007 + 2394987 2395027 41 AGAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAG AGAATGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAG < 41bp 1 0.082302031001101 1 0.171684801578522 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395007 chr7:2394991 synonymous SNV . 0 5 hm5C_associated_SNPs_7093 0 0 1 0 1 Ribosome 1 0.500231647113992 1 0.999536705772015 hm5C_site_9816 DeepMRMD:1;iRNA_m5C:0.999536705772015 9817 chr7 2394991 2394991 1 + C T rs11551167 2395008 + 2394988 2395028 41 GAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGG GAATGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGG < 41bp 1 0.150058911745432 1 0.114636063575745 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395008 chr7:2394991 synonymous SNV . 0 4 hm5C_associated_SNPs_7094 0 0 1 0 1 Ribosome 1 0.500231643926719 1 0.999536712146562 hm5C_site_9817 DeepMRMD:1;iRNA_m5C:0.999536712146562 9818 chr7 2394991 2394991 1 + C T rs11551167 2395011 + 2394991 2395031 41 CGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACT TGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACT < 41bp 1 0.0762396618268052 1 0.140939384698868 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395011 chr7:2394991 synonymous SNV . 0 1 hm5C_associated_SNPs_7095 0 0 1 0 1 Ribosome 1 0.500231643928017 1 0.999536712143967 hm5C_site_9818 DeepMRMD:1;iRNA_m5C:0.999536712143967 9819 chr7 2395008 2395008 1 + C T rs545964398 2394994 + 2394974 2395014 41 CCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCCCTCCTT CCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCTCTCCTT < 41bp 1 0.677243754024285 1 0.588987827301025 experiment 0.645512491951429 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2394994 chr7:2395008 nonsynonymous SNV 0.946 1 35 hm5C_associated_SNPs_7096 0 0 1 0 1 Ribosome 1 0.50023164847319 0.82202434539795 0.99953670305362 hm5C_site_9819 DeepMRMD:0.82202434539795;iRNA_m5C:0.99953670305362 9820 chr7 2395008 2395008 1 + C T rs545964398 2395007 + 2394987 2395027 41 AGAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAG AGAACGGCGACGCGGACGAGCTCTCCTTCAGCGACCCCGAG < 41bp 1 0.194585502259223 1 0.193403035402298 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395007 chr7:2395008 nonsynonymous SNV 0.946 1 22 hm5C_associated_SNPs_7097 0 0 1 0 1 Ribosome 1 0.500231634705845 1 0.99953673058831 hm5C_site_9820 DeepMRMD:1;iRNA_m5C:0.99953673058831 9821 chr7 2395008 2395008 1 + C T rs545964398 2395011 + 2394991 2395031 41 CGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACT CGGCGACGCGGACGAGCTCTCCTTCAGCGACCCCGAGGACT < 41bp 1 0.10454492773572 1 0.0852477252483368 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395011 chr7:2395008 nonsynonymous SNV 0.946 1 18 hm5C_associated_SNPs_7098 0 0 1 0 1 Ribosome 1 0.500231645340508 1 0.999536709318983 hm5C_site_9821 DeepMRMD:1;iRNA_m5C:0.999536709318983 9822 chr7 2395008 2395008 1 + C T rs545964398 2395015 + 2394995 2395035 41 GACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACTTCGT GACGCGGACGAGCTCTCCTTCAGCGACCCCGAGGACTTCGT < 41bp 1 0.685753221459896 1 0.755803644657135 experiment 0.628493557080207 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395015 chr7:2395008 nonsynonymous SNV 0.946 1 14 hm5C_associated_SNPs_7099 0 0 1 0 1 Ribosome 1 0.500231643915123 0.48839271068573 0.999536712169754 hm5C_site_9822 DeepMRMD:0.48839271068573;iRNA_m5C:0.999536712169754 9823 chr7 2395008 2395008 1 + C T rs545964398 2395021 + 2395001 2395041 41 GACGAGCCCTCCTTCAGCGACCCCGAGGACTTCGTGGACGA GACGAGCTCTCCTTCAGCGACCCCGAGGACTTCGTGGACGA < 41bp 1 0.487912318300302 1 0.249700248241425 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395021 chr7:2395008 nonsynonymous SNV 0.946 1 8 hm5C_associated_SNPs_7100 0 0 1 0 1 Ribosome 1 0.500231643510475 1 0.99953671297905 hm5C_site_9823 DeepMRMD:1;iRNA_m5C:0.99953671297905 9824 chr7 2411417 2411417 1 + T G rs77573843 2411420 + 2411400 2411440 41 TTTTTTAAACAGGGTGTTGTCACAAATTTTGAAATTTTCCG TTTTTTAAACAGGGTGTGGTCACAAATTTTGAAATTTTCCG < 41bp 1 0.535887509191773 1 0.254317820072174 experiment 0.928224981616454 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2411420 chr7:2411417 synonymous SNV . 0 18 hm5C_associated_SNPs_7101 0 0 1 0 0 Ribosome 1 0.500231645179659 1 0.999536709640682 hm5C_site_9824 DeepMRMD:1;iRNA_m5C:0.999536709640682 9825 chr7 2416565 2416565 1 + G A rs111701262 2416581 + 2416561 2416601 41 TGGTGTGTCCCTGCCCTGGCCTAGGTGGACAACGCGTACTG TGGTATGTCCCTGCCCTGGCCTAGGTGGACAACGCGTACTG < 41bp 1 0.546252573172069 1 0.554604768753052 experiment 0.907494853655863 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF3B ENSG00000106263 intronic Human protein_coding chr7:2416581 chr7:2416565 . . 0 5 hm5C_associated_SNPs_7102 0 0 1 0 0 Ribosome 1 0.500231639747629 0.890790462493896 0.999536720504741 hm5C_site_9825 DeepMRMD:0.890790462493896;iRNA_m5C:0.999536720504741 9826 chr7 2419994 2419994 1 + C A rs530959610 2419977 + 2419957 2419997 41 CCGCGTGACTCCCGCCTCCTCCCTGTGCTCTCTGGCTCTGG CCGCGTGACTCCCGCCTCCTCCCTGTGCTCTCTGGCTATGG < 41bp 1 0.445308115572575 1 0.0962384641170502 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EIF3B ENSG00000106263 UTR3 Human protein_coding chr7:2419977 chr7:2419994 . . 0 38 hm5C_associated_SNPs_7103 0 0 1 0 2 Ribosome 1 0.500231643922824 1 0.999536712154353 hm5C_site_9826 DeepMRMD:1;iRNA_m5C:0.999536712154353 9827 chr7 2472409 2472409 1 + G A rs143942839 2472416 + 2472396 2472436 41 CTAGGCCGCACACGGGGCCGCCGCTGCCCACGCCCGGGCCG CTAGGCCGCACACAGGGCCGCCGCTGCCCACGCCCGGGCCG < 41bp 1 0.432320653289023 1 0.0807695090770721 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472416 chr7:2472409 synonymous SNV . 0 14 hm5C_associated_SNPs_7105 0 0 1 0 0 nucleolus 1 0.500231643927141 1 0.999536712145717 hm5C_site_9827 DeepMRMD:1;iRNA_m5C:0.999536712145717 9828 chr7 2472429 2472429 1 + C A rs3735099 2472416 + 2472396 2472436 41 CTAGGCCGCACACGGGGCCGCCGCTGCCCACGCCCGGGCCG CTAGGCCGCACACGGGGCCGCCGCTGCCCACGCACGGGCCG < 41bp 1 0.462135200449816 1 0.137732088565826 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472416 chr7:2472429 nonsynonymous SNV 0.011 1 34 hm5C_associated_SNPs_7106 0 0 1 0 0 nucleolus 1 0.500231643921115 1 0.99953671215777 hm5C_site_9828 DeepMRMD:1;iRNA_m5C:0.99953671215777 9829 chr7 2472429 2472429 1 + C A rs3735099 2472435 + 2472415 2472455 41 GCCGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCA GCCGCTGCCCACGCACGGGCCGGACAGGGACAGGGAGCTCA < 41bp 1 0.424900623615895 1 0.278276860713959 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472435 chr7:2472429 nonsynonymous SNV 0.011 1 15 hm5C_associated_SNPs_7107 0 0 1 0 0 nucleolus 1 0.500231643919105 1 0.99953671216179 hm5C_site_9829 DeepMRMD:1;iRNA_m5C:0.99953671216179 9830 chr7 2472452 2472452 1 + C T rs114841399 2472435 + 2472415 2472455 41 GCCGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCA GCCGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGTTCA < 41bp 1 0.390689501596806 1 0.160686254501343 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472435 chr7:2472452 nonsynonymous SNV 0.004 0 38 hm5C_associated_SNPs_7108 0 0 1 0 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_9830 DeepMRMD:1;iRNA_m5C:0.999536712157815 9831 chr7 2472455 2472455 1 + A T rs3735100 2472435 + 2472415 2472455 41 GCCGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCA GCCGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCT < 41bp 1 0.398405824548304 1 0.237634897232056 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472435 chr7:2472455 nonsynonymous SNV 0.014 0 41 hm5C_associated_SNPs_7109 0 0 0 0 0 nucleolus 1 0.500231643921092 1 0.999536712157816 hm5C_site_9831 DeepMRMD:1;iRNA_m5C:0.999536712157816 9832 chr7 2686525 2686525 1 + C G rs148208032 2686507 + 2686487 2686527 41 GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTCGC GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTGGC < 41bp 1 0.50647285587042 1 0.761405348777771 experiment 0.98705428825916 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686507 chr7:2686525 synonymous SNV . 0 39 hm5C_associated_SNPs_7110 0 0 1 0 1 Ribosome 1 0.500231643921123 0.477189302444458 0.999536712157753 hm5C_site_9832 DeepMRMD:0.477189302444458;iRNA_m5C:0.999536712157753 9833 chr7 2702350 2702350 1 + C G rs116694861 2702362 + 2702342 2702382 41 CTGTCCCCCCTTGGGACTAACCACTAACCTCACCCCCAAAC CTGTCCCCGCTTGGGACTAACCACTAACCTCACCCCCAAAC < 41bp 1 0.178383304114396 1 0.0428435802459717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH3 ENSG00000136295 UTR3 Human protein_coding chr7:2702362 chr7:2702350 . . 0 9 hm5C_associated_SNPs_7111 0 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9833 DeepMRMD:1;iRNA_m5C:0.999536712157815 9834 chr7 2702939 2702939 1 + C G rs73281129 2702925 + 2702905 2702945 41 TTTACAGACGCATGGCTCTTCCTCCCAGAGCAGCCGGCAGC TTTACAGACGCATGGCTCTTCCTCCCAGAGCAGCGGGCAGC < 41bp 1 0.0571140708881861 1 0.0249415636062622 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTYH3 ENSG00000136295 UTR3 Human protein_coding chr7:2702925 chr7:2702939 . . 0 35 hm5C_associated_SNPs_7112 0 0 1 0 0 Ribosome 1 0.500231666873987 1 0.999536666252025 hm5C_site_9834 DeepMRMD:1;iRNA_m5C:0.999536666252025 9835 chr7 2703247 2703247 1 + G A rs11546976 2703232 + 2703212 2703252 41 GCCAACCTGCCCAGTCTTTCCTCTGGGCTTGACCCGCCAGG GCCAACCTGCCCAGTCTTTCCTCTGGGCTTGACCCACCAGG < 41bp 1 0.489277288395857 1 0.595858335494995 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTYH3 ENSG00000136295 UTR3 Human protein_coding chr7:2703232 chr7:2703247 . . 0 36 hm5C_associated_SNPs_7113 0 0 1 0 0 Ribosome 1 0.500231656455565 0.80828332901001 0.99953668708887 hm5C_site_9835 DeepMRMD:0.80828332901001;iRNA_m5C:0.99953668708887 9836 chr7 4260921 4260921 1 + C A rs138688738 4260905 + 4260885 4260925 41 CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAC CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAAATGAC < 41bp 1 0.200561166859641 1 0.495281249284744 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4260905 chr7:4260921 nonsynonymous SNV 0.748 4 37 hm5C_associated_SNPs_7114 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9836 DeepMRMD:1;iRNA_m5C:0.999536712157815 9837 chr7 4306592 4306592 1 + G A rs117412862 4306587 + 4306567 4306607 41 AGTATCTGACCAGTGCCACCCAGGAGCCAGTCTCCTGGCCA AGTATCTGACCAGTGCCACCCAGGAACCAGTCTCCTGGCCA < 41bp 1 0.638576044574159 1 0.946736335754395 experiment 0.722847910851682 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306587 chr7:4306592 . . 0 26 hm5C_associated_SNPs_7115 0 0 0 0 0 cytosol 1 0.500231644299976 0.10652732849121 0.999536711400049 hm5C_site_9837 DeepMRMD:0.10652732849121;iRNA_m5C:0.999536711400049 9838 chr7 4306901 4306901 1 + C T rs192254914 4306881 + 4306861 4306901 41 CCTTCCTCTCTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCC CCTTCCTCTCTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCT < 41bp 1 0.0153884429773114 1 0.0557940900325775 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306881 chr7:4306901 . . 0 41 hm5C_associated_SNPs_7116 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9838 DeepMRMD:1;iRNA_m5C:0.999536712157815 9839 chr7 4306901 4306901 1 + C T rs192254914 4306882 + 4306862 4306902 41 CTTCCTCTCTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCCC CTTCCTCTCTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCTC < 41bp 1 0.109195290822723 1 0.234325677156448 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306882 chr7:4306901 . . 0 40 hm5C_associated_SNPs_7117 0 0 0 0 0 cytosol 1 0.500231643921216 1 0.999536712157567 hm5C_site_9839 DeepMRMD:1;iRNA_m5C:0.999536712157567 9840 chr7 4306901 4306901 1 + C T rs192254914 4306884 + 4306864 4306904 41 TCCTCTCTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCCCTT TCCTCTCTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCTCTT < 41bp 1 0.0139429513873453 1 0.0834939479827881 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306884 chr7:4306901 . . 0 38 hm5C_associated_SNPs_7118 0 0 0 0 0 cytosol 1 0.500231643914629 1 0.999536712170742 hm5C_site_9840 DeepMRMD:1;iRNA_m5C:0.999536712170742 9841 chr7 4306901 4306901 1 + C T rs192254914 4306885 + 4306865 4306905 41 CCTCTCTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCCCTTC CCTCTCTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCTCTTC < 41bp 1 0.0135941991254777 1 0.042708694934845 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306885 chr7:4306901 . . 0 37 hm5C_associated_SNPs_7119 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9841 DeepMRMD:1;iRNA_m5C:0.999536712157815 9842 chr7 4306901 4306901 1 + C T rs192254914 4306888 + 4306868 4306908 41 CTCTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCCCTTCCTT CTCTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCTCTTCCTT < 41bp 1 0.0197078327459088 1 0.517206370830536 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306888 chr7:4306901 . . 0 34 hm5C_associated_SNPs_7120 0 0 0 0 0 cytosol 1 0.500231643921092 0.965587258338928 0.999536712157815 hm5C_site_9842 DeepMRMD:0.965587258338928;iRNA_m5C:0.999536712157815 9843 chr7 4306901 4306901 1 + C T rs192254914 4306889 + 4306869 4306909 41 TCTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCCCTTCCTTC TCTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCTCTTCCTTC < 41bp 1 0.0179692586926772 1 0.124980807304382 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306889 chr7:4306901 . . 0 33 hm5C_associated_SNPs_7121 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9843 DeepMRMD:1;iRNA_m5C:0.999536712157815 9844 chr7 4306901 4306901 1 + C T rs192254914 4306890 + 4306870 4306910 41 CTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCCCTTCCTTCC CTTCTTTCCTCCCTCCCTCCCTCCTTCCCTCTCTTCCTTCC < 41bp 1 0.152317544280437 1 0.733474731445312 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306890 chr7:4306901 . . 0 32 hm5C_associated_SNPs_7122 0 0 0 0 0 cytosol 1 0.500231643921092 0.533050537109376 0.999536712157815 hm5C_site_9844 DeepMRMD:0.533050537109376;iRNA_m5C:0.999536712157815 9845 chr7 4306901 4306901 1 + C T rs192254914 4306892 + 4306872 4306912 41 TCTTTCCTCCCTCCCTCCCTCCTTCCCTCCCTTCCTTCCTC TCTTTCCTCCCTCCCTCCCTCCTTCCCTCTCTTCCTTCCTC < 41bp 1 0.00967462014408077 1 0.276805132627487 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306892 chr7:4306901 . . 0 30 hm5C_associated_SNPs_7123 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9845 DeepMRMD:1;iRNA_m5C:0.999536712157815 9846 chr7 4306901 4306901 1 + C T rs192254914 4306893 + 4306873 4306913 41 CTTTCCTCCCTCCCTCCCTCCTTCCCTCCCTTCCTTCCTCT CTTTCCTCCCTCCCTCCCTCCTTCCCTCTCTTCCTTCCTCT < 41bp 1 0.0302043398763007 1 0.0843889117240906 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306893 chr7:4306901 . . 0 29 hm5C_associated_SNPs_7124 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9846 DeepMRMD:1;iRNA_m5C:0.999536712157815 9847 chr7 4306901 4306901 1 + C T rs192254914 4306896 + 4306876 4306916 41 TCCTCCCTCCCTCCCTCCTTCCCTCCCTTCCTTCCTCTCTT TCCTCCCTCCCTCCCTCCTTCCCTCTCTTCCTTCCTCTCTT < 41bp 1 0.0225452125019577 1 0.04048952460289 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306896 chr7:4306901 . . 0 26 hm5C_associated_SNPs_7125 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9847 DeepMRMD:1;iRNA_m5C:0.999536712157815 9848 chr7 4306901 4306901 1 + C T rs192254914 4306897 + 4306877 4306917 41 CCTCCCTCCCTCCCTCCTTCCCTCCCTTCCTTCCTCTCTTT CCTCCCTCCCTCCCTCCTTCCCTCTCTTCCTTCCTCTCTTT < 41bp 1 0.0241952434228495 1 0.0198586881160736 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306897 chr7:4306901 . . 0 25 hm5C_associated_SNPs_7126 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9848 DeepMRMD:1;iRNA_m5C:0.999536712157815 9849 chr7 4306901 4306901 1 + C T rs192254914 4306898 + 4306878 4306918 41 CTCCCTCCCTCCCTCCTTCCCTCCCTTCCTTCCTCTCTTTC CTCCCTCCCTCCCTCCTTCCCTCTCTTCCTTCCTCTCTTTC < 41bp 1 0.0583329248246045 1 0.0352642238140106 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306898 chr7:4306901 . . 0 24 hm5C_associated_SNPs_7127 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9849 DeepMRMD:1;iRNA_m5C:0.999536712157815 9850 chr7 4306901 4306901 1 + C T rs192254914 4306900 + 4306880 4306920 41 CCCTCCCTCCCTCCTTCCCTCCCTTCCTTCCTCTCTTTCCT CCCTCCCTCCCTCCTTCCCTCTCTTCCTTCCTCTCTTTCCT < 41bp 1 0.0466983075795419 1 0.0554127991199493 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306900 chr7:4306901 . . 0 22 hm5C_associated_SNPs_7128 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9850 DeepMRMD:1;iRNA_m5C:0.999536712157815 9851 chr7 4306901 4306901 1 + C T rs192254914 4306902 + 4306882 4306922 41 CTCCCTCCCTCCTTCCCTCCCTTCCTTCCTCTCTTTCCTCC CTCCCTCCCTCCTTCCCTCTCTTCCTTCCTCTCTTTCCTCC < 41bp 1 0.0799122974340355 1 0.218284785747528 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306902 chr7:4306901 . . 0 20 hm5C_associated_SNPs_7129 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9851 DeepMRMD:1;iRNA_m5C:0.999536712157815 9852 chr7 4306901 4306901 1 + C T rs192254914 4306905 + 4306885 4306925 41 CCTCCCTCCTTCCCTCCCTTCCTTCCTCTCTTTCCTCCTTC CCTCCCTCCTTCCCTCTCTTCCTTCCTCTCTTTCCTCCTTC < 41bp 1 0.0161369977810294 1 0.0343751311302185 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306905 chr7:4306901 . . 0 17 hm5C_associated_SNPs_7130 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9852 DeepMRMD:1;iRNA_m5C:0.999536712157815 9853 chr7 4306901 4306901 1 + C T rs192254914 4306906 + 4306886 4306926 41 CTCCCTCCTTCCCTCCCTTCCTTCCTCTCTTTCCTCCTTCC CTCCCTCCTTCCCTCTCTTCCTTCCTCTCTTTCCTCCTTCC < 41bp 1 0.0517882796435066 1 0.0299161970615387 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306906 chr7:4306901 . . 0 16 hm5C_associated_SNPs_7131 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9853 DeepMRMD:1;iRNA_m5C:0.999536712157815 9854 chr7 4306901 4306901 1 + C T rs192254914 4306909 + 4306889 4306929 41 CCTCCTTCCCTCCCTTCCTTCCTCTCTTTCCTCCTTCCTTC CCTCCTTCCCTCTCTTCCTTCCTCTCTTTCCTCCTTCCTTC < 41bp 1 0.0308519162354991 1 0.016303688287735 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306909 chr7:4306901 . . 0 13 hm5C_associated_SNPs_7132 0 0 0 0 0 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_9854 DeepMRMD:1;iRNA_m5C:0.999536712157815 9855 chr7 4306901 4306901 1 + C T rs192254914 4306910 + 4306890 4306930 41 CTCCTTCCCTCCCTTCCTTCCTCTCTTTCCTCCTTCCTTCC CTCCTTCCCTCTCTTCCTTCCTCTCTTTCCTCCTTCCTTCC < 41bp 1 0.0512815969395869 1 0.0660297870635986 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306910 chr7:4306901 . . 0 12 hm5C_associated_SNPs_7133 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9855 DeepMRMD:1;iRNA_m5C:0.999536712157815 9856 chr7 4306901 4306901 1 + C T rs192254914 4306912 + 4306892 4306932 41 CCTTCCCTCCCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCT CCTTCCCTCTCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCT < 41bp 1 0.108656186437435 1 0.327361226081848 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306912 chr7:4306901 . . 0 10 hm5C_associated_SNPs_7134 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9856 DeepMRMD:1;iRNA_m5C:0.999536712157815 9857 chr7 4306901 4306901 1 + C T rs192254914 4306914 + 4306894 4306934 41 TTCCCTCCCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCC TTCCCTCTCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCC < 41bp 1 0.0333669124909401 1 0.0288957059383392 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306914 chr7:4306901 . . 0 8 hm5C_associated_SNPs_7135 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9857 DeepMRMD:1;iRNA_m5C:0.999536712157815 9858 chr7 4306901 4306901 1 + C T rs192254914 4306918 + 4306898 4306938 41 CTCCCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTC CTCTCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTC < 41bp 1 0.0328674335068974 1 0.0848384499549866 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306918 chr7:4306901 . . 0 4 hm5C_associated_SNPs_7136 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9858 DeepMRMD:1;iRNA_m5C:0.999536712157815 9859 chr7 4306901 4306901 1 + C T rs192254914 4306919 + 4306899 4306939 41 TCCCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTCT TCTCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTCT < 41bp 1 0.154019101585838 1 0.289205610752106 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306919 chr7:4306901 . . 0 3 hm5C_associated_SNPs_7137 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9859 DeepMRMD:1;iRNA_m5C:0.999536712157815 9860 chr7 4306901 4306901 1 + C T rs192254914 4306921 + 4306901 4306941 41 CCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTCTTT TCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTCTTT < 41bp 1 0.0127710151385191 1 0.168580949306488 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306921 chr7:4306901 . . 0 1 hm5C_associated_SNPs_7138 0 0 0 0 0 cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_9860 DeepMRMD:1;iRNA_m5C:0.99953671215782 9861 chr7 4306938 4306938 1 + C G rs151091785 4306918 + 4306898 4306938 41 CTCCCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTC CTCCCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTG < 41bp 1 0.0367850056002725 1 0.0634545087814331 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306918 chr7:4306938 . . 0 41 hm5C_associated_SNPs_7139 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9861 DeepMRMD:1;iRNA_m5C:0.999536712157815 9862 chr7 4306938 4306938 1 + C G rs151091785 4306919 + 4306899 4306939 41 TCCCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTCT TCCCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTGT < 41bp 1 0.1334945765821 1 0.183873414993286 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306919 chr7:4306938 . . 0 40 hm5C_associated_SNPs_7140 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9862 DeepMRMD:1;iRNA_m5C:0.999536712157815 9863 chr7 4306938 4306938 1 + C G rs151091785 4306921 + 4306901 4306941 41 CCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTCTTT CCTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTGTTT < 41bp 1 0.0124216560154074 1 0.169398784637451 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306921 chr7:4306938 . . 0 38 hm5C_associated_SNPs_7141 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9863 DeepMRMD:1;iRNA_m5C:0.999536712157815 9864 chr7 4306938 4306938 1 + C G rs151091785 4306922 + 4306902 4306942 41 CTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTCTTTC CTTCCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTGTTTC < 41bp 1 0.034724196993379 1 0.330037474632263 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306922 chr7:4306938 . . 0 37 hm5C_associated_SNPs_7142 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9864 DeepMRMD:1;iRNA_m5C:0.999536712157815 9865 chr7 4306938 4306938 1 + C G rs151091785 4306925 + 4306905 4306945 41 CCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTCTTTCCCT CCTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTGTTTCCCT < 41bp 1 0.00767749451655769 1 0.110429495573044 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306925 chr7:4306938 . . 0 34 hm5C_associated_SNPs_7143 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9865 DeepMRMD:1;iRNA_m5C:0.999536712157815 9866 chr7 4306938 4306938 1 + C G rs151091785 4306926 + 4306906 4306946 41 CTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTCTTTCCCTC CTTCCTCTCTTTCCTCCTTCCTTCCCTCCCTTGTTTCCCTC < 41bp 1 0.0443472495449777 1 0.371735334396362 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306926 chr7:4306938 . . 0 33 hm5C_associated_SNPs_7144 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9866 DeepMRMD:1;iRNA_m5C:0.999536712157815 9867 chr7 4306938 4306938 1 + C G rs151091785 4306929 + 4306909 4306949 41 CCTCTCTTTCCTCCTTCCTTCCCTCCCTTCTTTCCCTCCCT CCTCTCTTTCCTCCTTCCTTCCCTCCCTTGTTTCCCTCCCT < 41bp 1 0.0241563492354953 1 0.207924336194992 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306929 chr7:4306938 . . 0 30 hm5C_associated_SNPs_7145 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9867 DeepMRMD:1;iRNA_m5C:0.999536712157815 9868 chr7 4306938 4306938 1 + C G rs151091785 4306930 + 4306910 4306950 41 CTCTCTTTCCTCCTTCCTTCCCTCCCTTCTTTCCCTCCCTC CTCTCTTTCCTCCTTCCTTCCCTCCCTTGTTTCCCTCCCTC < 41bp 1 0.0163605288021734 1 0.222016304731369 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306930 chr7:4306938 . . 0 29 hm5C_associated_SNPs_7146 0 0 1 0 0 cytosol 1 0.500231643921086 1 0.999536712157828 hm5C_site_9868 DeepMRMD:1;iRNA_m5C:0.999536712157828 9869 chr7 4306938 4306938 1 + C G rs151091785 4306931 + 4306911 4306951 41 TCTCTTTCCTCCTTCCTTCCCTCCCTTCTTTCCCTCCCTCC TCTCTTTCCTCCTTCCTTCCCTCCCTTGTTTCCCTCCCTCC < 41bp 1 0.169962664432908 1 0.561684787273407 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306931 chr7:4306938 . . 0 28 hm5C_associated_SNPs_7147 0 0 1 0 0 cytosol 1 0.500231643921092 0.876630425453186 0.999536712157815 hm5C_site_9869 DeepMRMD:0.876630425453186;iRNA_m5C:0.999536712157815 9870 chr7 4306938 4306938 1 + C G rs151091785 4306933 + 4306913 4306953 41 TCTTTCCTCCTTCCTTCCCTCCCTTCTTTCCCTCCCTCCCT TCTTTCCTCCTTCCTTCCCTCCCTTGTTTCCCTCCCTCCCT < 41bp 1 0.05490519363783 1 0.0286920070648193 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306933 chr7:4306938 . . 0 26 hm5C_associated_SNPs_7148 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9870 DeepMRMD:1;iRNA_m5C:0.999536712157815 9871 chr7 4306938 4306938 1 + C G rs151091785 4306934 + 4306914 4306954 41 CTTTCCTCCTTCCTTCCCTCCCTTCTTTCCCTCCCTCCCTT CTTTCCTCCTTCCTTCCCTCCCTTGTTTCCCTCCCTCCCTT < 41bp 1 0.029981824559864 1 0.0246672332286835 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306934 chr7:4306938 . . 0 25 hm5C_associated_SNPs_7149 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9871 DeepMRMD:1;iRNA_m5C:0.999536712157815 9872 chr7 4306938 4306938 1 + C G rs151091785 4306935 + 4306915 4306955 41 TTTCCTCCTTCCTTCCCTCCCTTCTTTCCCTCCCTCCCTTC TTTCCTCCTTCCTTCCCTCCCTTGTTTCCCTCCCTCCCTTC < 41bp 1 0.157305076756712 1 0.0273577868938446 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306935 chr7:4306938 . . 0 24 hm5C_associated_SNPs_7150 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9872 DeepMRMD:1;iRNA_m5C:0.999536712157815 9873 chr7 4306938 4306938 1 + C G rs151091785 4306942 + 4306922 4306962 41 CTTCCTTCCCTCCCTTCTTTCCCTCCCTCCCTTCCTCTCTC CTTCCTTCCCTCCCTTGTTTCCCTCCCTCCCTTCCTCTCTC < 41bp 1 0.0283704880167327 1 0.083772748708725 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306942 chr7:4306938 . . 0 17 hm5C_associated_SNPs_7151 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9873 DeepMRMD:1;iRNA_m5C:0.999536712157815 9874 chr7 4306938 4306938 1 + C G rs151091785 4306943 + 4306923 4306963 41 TTCCTTCCCTCCCTTCTTTCCCTCCCTCCCTTCCTCTCTCC TTCCTTCCCTCCCTTGTTTCCCTCCCTCCCTTCCTCTCTCC < 41bp 1 0.0316146746271519 1 0.110145092010498 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306943 chr7:4306938 . . 0 16 hm5C_associated_SNPs_7152 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9874 DeepMRMD:1;iRNA_m5C:0.999536712157815 9875 chr7 4306938 4306938 1 + C G rs151091785 4306944 + 4306924 4306964 41 TCCTTCCCTCCCTTCTTTCCCTCCCTCCCTTCCTCTCTCCC TCCTTCCCTCCCTTGTTTCCCTCCCTCCCTTCCTCTCTCCC < 41bp 1 0.0854745663072984 1 0.158236593008041 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306944 chr7:4306938 . . 0 15 hm5C_associated_SNPs_7153 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9875 DeepMRMD:1;iRNA_m5C:0.999536712157815 9876 chr7 4306938 4306938 1 + C G rs151091785 4306946 + 4306926 4306966 41 CTTCCCTCCCTTCTTTCCCTCCCTCCCTTCCTCTCTCCCCT CTTCCCTCCCTTGTTTCCCTCCCTCCCTTCCTCTCTCCCCT < 41bp 1 0.0225340501231622 1 0.103649377822876 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306946 chr7:4306938 . . 0 13 hm5C_associated_SNPs_7154 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9876 DeepMRMD:1;iRNA_m5C:0.999536712157815 9877 chr7 4306938 4306938 1 + C G rs151091785 4306947 + 4306927 4306967 41 TTCCCTCCCTTCTTTCCCTCCCTCCCTTCCTCTCTCCCCTA TTCCCTCCCTTGTTTCCCTCCCTCCCTTCCTCTCTCCCCTA < 41bp 1 0.0147758780681065 1 0.2784743309021 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306947 chr7:4306938 . . 0 12 hm5C_associated_SNPs_7155 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9877 DeepMRMD:1;iRNA_m5C:0.999536712157815 9878 chr7 4306938 4306938 1 + C G rs151091785 4306948 + 4306928 4306968 41 TCCCTCCCTTCTTTCCCTCCCTCCCTTCCTCTCTCCCCTAT TCCCTCCCTTGTTTCCCTCCCTCCCTTCCTCTCTCCCCTAT < 41bp 1 0.130230374327532 1 0.369424760341644 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306948 chr7:4306938 . . 0 11 hm5C_associated_SNPs_7156 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9878 DeepMRMD:1;iRNA_m5C:0.999536712157815 9879 chr7 4306938 4306938 1 + C G rs151091785 4306950 + 4306930 4306970 41 CCTCCCTTCTTTCCCTCCCTCCCTTCCTCTCTCCCCTATTC CCTCCCTTGTTTCCCTCCCTCCCTTCCTCTCTCCCCTATTC < 41bp 1 0.0320185423339853 1 0.0807085931301117 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306950 chr7:4306938 . . 0 9 hm5C_associated_SNPs_7157 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9879 DeepMRMD:1;iRNA_m5C:0.999536712157815 9880 chr7 4306938 4306938 1 + C G rs151091785 4306951 + 4306931 4306971 41 CTCCCTTCTTTCCCTCCCTCCCTTCCTCTCTCCCCTATTCC CTCCCTTGTTTCCCTCCCTCCCTTCCTCTCTCCCCTATTCC < 41bp 1 0.0067858699979414 1 0.0264908969402313 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306951 chr7:4306938 . . 0 8 hm5C_associated_SNPs_7158 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9880 DeepMRMD:1;iRNA_m5C:0.999536712157815 9881 chr7 4306938 4306938 1 + C G rs151091785 4306952 + 4306932 4306972 41 TCCCTTCTTTCCCTCCCTCCCTTCCTCTCTCCCCTATTCCT TCCCTTGTTTCCCTCCCTCCCTTCCTCTCTCCCCTATTCCT < 41bp 1 0.0348195724920754 1 0.0222736597061157 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306952 chr7:4306938 . . 0 7 hm5C_associated_SNPs_7159 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9881 DeepMRMD:1;iRNA_m5C:0.999536712157815 9882 chr7 4306938 4306938 1 + C G rs151091785 4306955 + 4306935 4306975 41 CTTCTTTCCCTCCCTCCCTTCCTCTCTCCCCTATTCCTTCT CTTGTTTCCCTCCCTCCCTTCCTCTCTCCCCTATTCCTTCT < 41bp 1 0.0219555634383845 1 0.0184118747711182 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306955 chr7:4306938 . . 0 4 hm5C_associated_SNPs_7160 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9882 DeepMRMD:1;iRNA_m5C:0.999536712157815 9883 chr7 4306938 4306938 1 + C G rs151091785 4306956 + 4306936 4306976 41 TTCTTTCCCTCCCTCCCTTCCTCTCTCCCCTATTCCTTCTT TTGTTTCCCTCCCTCCCTTCCTCTCTCCCCTATTCCTTCTT < 41bp 1 0.0338954133008946 1 0.108402252197266 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306956 chr7:4306938 . . 0 3 hm5C_associated_SNPs_7161 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9883 DeepMRMD:1;iRNA_m5C:0.999536712157815 9884 chr7 4306938 4306938 1 + C G rs151091785 4306958 + 4306938 4306978 41 CTTTCCCTCCCTCCCTTCCTCTCTCCCCTATTCCTTCTTCC GTTTCCCTCCCTCCCTTCCTCTCTCCCCTATTCCTTCTTCC < 41bp 1 0.0518178467030392 1 0.384469926357269 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDK1 ENSG00000146555 UTR3 Human protein_coding chr7:4306958 chr7:4306938 . . 0 1 hm5C_associated_SNPs_7162 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9884 DeepMRMD:1;iRNA_m5C:0.999536712157815 9885 chr7 4722141 4722141 1 + G A rs574086514 4722142 + 4722122 4722162 41 TCCGGGCGCGATCGCGGGCGCGGGCTCCTCCGGGGGCTCCT TCCGGGCGCGATCGCGGGCACGGGCTCCTCCGGGGGCTCCT < 41bp 1 0.656430868350495 1 0.810981273651123 experiment 0.68713826329901 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4722142 chr7:4722141 nonsynonymous SNV 0.020 1 20 hm5C_associated_SNPs_7163 0 0 1 0 0 Endoplasmic reticulum 1 0.500231647052603 0.378037452697754 0.999536705894794 hm5C_site_9885 DeepMRMD:0.378037452697754;iRNA_m5C:0.999536705894794 9886 chr7 4794999 4794999 1 + C T rs112344773 4795002 + 4794982 4795022 41 CCCTACTACCGGACGGCCGACAAAGGCTGGCAGGTGAAGCC CCCTACTACCGGACGGCTGACAAAGGCTGGCAGGTGAAGCC < 41bp 1 0.31686514176513 1 0.682305216789246 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4795002 chr7:4794999 synonymous SNV . 0 18 hm5C_associated_SNPs_7164 0 0 1 0 1 Endoplasmic reticulum 1 0.500231657435689 0.635389566421508 0.999536685128622 hm5C_site_9886 DeepMRMD:0.635389566421508;iRNA_m5C:0.999536685128622 9887 chr7 4795022 4795022 1 + C G rs116434298 4795002 + 4794982 4795022 41 CCCTACTACCGGACGGCCGACAAAGGCTGGCAGGTGAAGCC CCCTACTACCGGACGGCCGACAAAGGCTGGCAGGTGAAGCG < 41bp 1 0.223110294850685 1 0.598027467727661 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOXK1 ENSG00000164916 intronic Human protein_coding chr7:4795002 chr7:4795022 . . 0 41 hm5C_associated_SNPs_7165 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921145 0.803945064544678 0.999536712157709 hm5C_site_9887 DeepMRMD:0.803945064544678;iRNA_m5C:0.999536712157709 9888 chr7 4801825 4801825 1 + C T rs61733617 4801817 + 4801797 4801837 41 CTTCTTCCTCCACTCCAGCCCTCACCAGCCCTTTGCAGCTC CTTCTTCCTCCACTCCAGCCCTCACCAGTCCTTTGCAGCTC < 41bp 1 0.0817703662594379 1 0.0348775088787079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4801817 chr7:4801825 synonymous SNV . 0 29 hm5C_associated_SNPs_7166 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392109 1 0.99953671215782 hm5C_site_9888 DeepMRMD:1;iRNA_m5C:0.99953671215782 9889 chr7 4823008 4823008 1 + G A rs186993311 4823023 + 4823003 4823043 41 GAGCCGGCAGCCTGAGGGACCCAGCCTCAGACACCTCCTCC GAGCCAGCAGCCTGAGGGACCCAGCCTCAGACACCTCCTCC < 41bp 1 0.177851067878582 1 0.460353344678879 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4823023 chr7:4823008 nonsynonymous SNV 0.990 2 6 hm5C_associated_SNPs_7167 0 0 1 0 0 chromatin 1 0.500231643921136 1 0.999536712157728 hm5C_site_9889 DeepMRMD:1;iRNA_m5C:0.999536712157728 9890 chr7 4823024 4823024 1 + C G rs530642822 4823023 + 4823003 4823043 41 GAGCCGGCAGCCTGAGGGACCCAGCCTCAGACACCTCCTCC GAGCCGGCAGCCTGAGGGACCGAGCCTCAGACACCTCCTCC < 41bp 1 0.448474827087815 1 0.815426766872406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4823023 chr7:4823024 synonymous SNV . 0 22 hm5C_associated_SNPs_7168 0 0 1 0 0 chromatin 1 0.500231647448678 0.369146466255188 0.999536705102643 hm5C_site_9890 DeepMRMD:0.369146466255188;iRNA_m5C:0.999536705102643 9891 chr7 4830463 4830463 1 + G A rs11766611 4830446 + 4830426 4830466 41 TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCACCGTGC TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCACCATGC < 41bp 1 0.0829452378284073 1 0.0187576115131378 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4830446 chr7:4830463 nonsynonymous SNV 0.020 1 38 hm5C_associated_SNPs_7169 2 0 1 0 1 chromatin 1 0.500231643921062 1 0.999536712157876 hm5C_site_9891 DeepMRMD:1;iRNA_m5C:0.999536712157876 not specified not specified 9892 chr7 5036428 5036428 1 + C A rs62444280 5036420 + 5036400 5036440 41 CTGTGGCCCTGTTCTCAGCCCTCTTCCCCAGTATGTAGCCC CTGTGGCCCTGTTCTCAGCCCTCTTCCCAAGTATGTAGCCC < 41bp 1 0.0614708281451658 1 0.0519283711910248 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5036420 chr7:5036428 . . 0 29 hm5C_associated_SNPs_7171 0 0 1 2 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_9892 DeepMRMD:1;iRNA_m5C:0.999536712157815 9893 chr7 5036428 5036428 1 + C A rs62444280 5036443 + 5036423 5036463 41 TTCCCCAGTATGTAGCCCTGCATTTCCTGGGCCTGTGGCTG TTCCCAAGTATGTAGCCCTGCATTTCCTGGGCCTGTGGCTG < 41bp 1 0.0291025980450232 1 0.022679328918457 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5036443 chr7:5036428 . . 0 6 hm5C_associated_SNPs_7172 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9893 DeepMRMD:1;iRNA_m5C:0.999536712157815 9894 chr7 5036442 5036442 1 + G A rs78907407 5036443 + 5036423 5036463 41 TTCCCCAGTATGTAGCCCTGCATTTCCTGGGCCTGTGGCTG TTCCCCAGTATGTAGCCCTACATTTCCTGGGCCTGTGGCTG < 41bp 1 0.0278156997848082 1 0.0213263928890228 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5036443 chr7:5036442 . . 0 20 hm5C_associated_SNPs_7173 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9894 DeepMRMD:1;iRNA_m5C:0.999536712157815 9895 chr7 5037672 5037672 1 + T C rs144121611 5037679 + 5037659 5037699 41 ATTCCTTAGCCAGTGTACCTCCTACCTCAGAGTCTATGTGA ATTCCTTAGCCAGCGTACCTCCTACCTCAGAGTCTATGTGA < 41bp 1 0.0292301408497024 1 0.132812649011612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5037679 chr7:5037672 . . 0 14 hm5C_associated_SNPs_7176 0 0 1 9 0 unknown 1 0.500225044222149 1 0.999549911555703 hm5C_site_9895 DeepMRMD:1;iRNA_m5C:0.999549911555703 9896 chr7 5230037 5230037 1 + C T rs542906466 5230030 + 5230010 5230050 41 CGCGCCCTCCCCGGCCGGGCCCACTCGCCGCGCGCCCAGCC CGCGCCCTCCCCGGCCGGGCCCACTCGTCGCGCGCCCAGCC < 41bp 1 0.241623754197988 1 0.0525369346141815 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 UTR5 Human protein_coding chr7:5230030 chr7:5230037 . . 0 28 hm5C_associated_SNPs_7177 0 0 1 0 1 Cytosol 1 0.500231644074447 1 0.999536711851106 hm5C_site_9896 DeepMRMD:1;iRNA_m5C:0.999536711851106 9897 chr7 5230037 5230037 1 + C T rs542906466 5230031 + 5230011 5230051 41 GCGCCCTCCCCGGCCGGGCCCACTCGCCGCGCGCCCAGCCA GCGCCCTCCCCGGCCGGGCCCACTCGTCGCGCGCCCAGCCA < 41bp 1 0.445454212064337 1 0.0298338234424591 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 UTR5 Human protein_coding chr7:5230031 chr7:5230037 . . 0 27 hm5C_associated_SNPs_7178 0 0 1 0 1 Cytosol 1 0.500231496645333 1 0.999537006709333 hm5C_site_9897 DeepMRMD:1;iRNA_m5C:0.999537006709333 9898 chr7 5269314 5269314 1 + A G rs34104542 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCCCTTAGTCACTCAGACGTACGGCGCAGCTGCAGGAA < 41bp 1 0.154608013347909 1 0.185001134872437 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269314 synonymous SNV . 0 22 hm5C_associated_SNPs_7180 0 0 1 0 3 Cytosol 1 0.500231640174241 1 0.999536719651518 hm5C_site_9898 DeepMRMD:1;iRNA_m5C:0.999536719651518 9899 chr7 5272927 5272927 1 + C T rs6949942 5272915 + 5272895 5272935 41 CTGCTCGAACCTATGAGTCCCAGCCTCACTGGCGGCCTCAG CTGCTCGAACCTATGAGTCCCAGCCTCACTGGTGGCCTCAG < 41bp 1 0.602483573460104 1 0.150458931922913 experiment 0.795032853079792 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WIPI2 ENSG00000157954 UTR3 Human protein_coding chr7:5272915 chr7:5272927 . . 0 33 hm5C_associated_SNPs_7181 0 0 0 0 0 Cytosol 1 0.500231643777823 1 0.999536712444355 hm5C_site_9899 DeepMRMD:1;iRNA_m5C:0.999536712444355 9900 chr7 5336805 5336805 1 + C T rs568441145 5336820 + 5336800 5336840 41 CACGACGTTGTCGCCGGGGACGTCCACTTCGTAAGTGCGCA CACGATGTTGTCGCCGGGGACGTCCACTTCGTAAGTGCGCA < 41bp 1 0.0818198879919686 1 0.144979387521744 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336820 chr7:5336805 synonymous SNV . 0 6 hm5C_associated_SNPs_7182 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164377094 1 0.999536712458121 hm5C_site_9900 DeepMRMD:1;iRNA_m5C:0.999536712458121 9901 chr7 5336819 5336819 1 + A G rs376762145 5336820 + 5336800 5336840 41 CACGACGTTGTCGCCGGGGACGTCCACTTCGTAAGTGCGCA CACGACGTTGTCGCCGGGGGCGTCCACTTCGTAAGTGCGCA < 41bp 1 0.065690976142877 1 0.132944971323013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336820 chr7:5336819 nonsynonymous SNV 0.181 1 20 hm5C_associated_SNPs_7183 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921135 1 0.999536712157729 hm5C_site_9901 DeepMRMD:1;iRNA_m5C:0.999536712157729 9902 chr7 5338890 5338890 1 + C T rs141970112 5338900 + 5338880 5338920 41 TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCCGACATG TGCACCGCTATGTGGTGGCGCGGGTGATCTGGGCCGACATG < 41bp 1 0.56939101860175 1 0.452680319547653 experiment 0.8612179627965 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338900 chr7:5338890 synonymous SNV . 0 11 hm5C_associated_SNPs_7184 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642427246 1 0.999536715145509 hm5C_site_9902 DeepMRMD:1;iRNA_m5C:0.999536715145509 9903 chr7 5338899 5338899 1 + G A rs74819003 5338900 + 5338880 5338920 41 TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCCGACATG TGCACCGCTACGTGGTGGCACGGGTGATCTGGGCCGACATG < 41bp 1 0.606963255260241 1 0.254534423351288 experiment 0.786073489479518 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338900 chr7:5338899 synonymous SNV . 0 20 hm5C_associated_SNPs_7185 0 0 0 0 1 Endoplasmic reticulum 1 0.500231820273492 1 0.999536359453016 hm5C_site_9903 DeepMRMD:1;iRNA_m5C:0.999536359453016 9904 chr7 5644959 5644959 1 + G A rs140594742 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA GGCAACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA < 41bp 1 0.233863216234803 1 0.150693386793137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644959 nonsynonymous SNV 0.882 1 4 hm5C_associated_SNPs_7186 0 0 1 1 1 Ribosome 1 0.500231632740991 1 0.999536734518018 hm5C_site_9904 DeepMRMD:1;iRNA_m5C:0.999536734518018 9905 chr7 5645521 5645521 1 + C T rs185458134 5645522 + 5645502 5645542 41 CCCAGCCACCTCCTCCCAGCCCCCCAGGAGAGCTGGGCACA CCCAGCCACCTCCTCCCAGTCCCCCAGGAGAGCTGGGCACA < 41bp 1 0.122155116391256 1 0.4119972884655 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 UTR3 Human protein_coding chr7:5645522 chr7:5645521 . . 0 20 hm5C_associated_SNPs_7187 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9905 DeepMRMD:1;iRNA_m5C:0.999536712157815 9906 chr7 5645521 5645521 1 + C T rs185458134 5645523 + 5645503 5645543 41 CCAGCCACCTCCTCCCAGCCCCCCAGGAGAGCTGGGCACAT CCAGCCACCTCCTCCCAGTCCCCCAGGAGAGCTGGGCACAT < 41bp 1 0.480758764585871 1 0.542753636837006 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 UTR3 Human protein_coding chr7:5645523 chr7:5645521 . . 0 19 hm5C_associated_SNPs_7188 0 0 1 0 0 Ribosome 1 0.500231643921092 0.914492726325988 0.999536712157815 hm5C_site_9906 DeepMRMD:0.914492726325988;iRNA_m5C:0.999536712157815 9907 chr7 5645521 5645521 1 + C T rs185458134 5645524 + 5645504 5645544 41 CAGCCACCTCCTCCCAGCCCCCCAGGAGAGCTGGGCACATG CAGCCACCTCCTCCCAGTCCCCCAGGAGAGCTGGGCACATG < 41bp 1 0.281062316381138 1 0.412904888391495 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 UTR3 Human protein_coding chr7:5645524 chr7:5645521 . . 0 18 hm5C_associated_SNPs_7189 0 0 1 0 0 Ribosome 1 0.500231643921099 1 0.999536712157802 hm5C_site_9907 DeepMRMD:1;iRNA_m5C:0.999536712157802 9908 chr7 5645682 5645682 1 + G A rs3735288 5645671 + 5645651 5645691 41 GTGGTGGCTGGAAACAGCCCCTCTCCCACGTGGCAGAGGCT GTGGTGGCTGGAAACAGCCCCTCTCCCACGTAGCAGAGGCT < 41bp 1 0.0566432126704201 1 0.322840869426727 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FSCN1 ENSG00000075618 UTR3 Human protein_coding chr7:5645671 chr7:5645682 . . 0 32 hm5C_associated_SNPs_7190 0 0 1 0 0 Ribosome 1 0.500231646624257 1 0.999536706751485 hm5C_site_9908 DeepMRMD:1;iRNA_m5C:0.999536706751485 9909 chr7 6617237 6617237 1 + C T rs115316495 6617223 + 6617203 6617243 41 CTTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTC CTTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCTCACCTC < 41bp 1 0.344643563454604 1 0.138655841350555 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617223 chr7:6617237 . . 0 35 hm5C_associated_SNPs_7191 0 0 1 0 1 Cytosol 1 0.500231643919727 1 0.999536712160546 hm5C_site_9909 DeepMRMD:1;iRNA_m5C:0.999536712160546 9910 chr7 6617237 6617237 1 + C T rs115316495 6617224 + 6617204 6617244 41 TTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCG TTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCTCACCTCG < 41bp 1 0.628309287275501 1 0.211697816848755 experiment 0.743381425448999 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617224 chr7:6617237 . . 0 34 hm5C_associated_SNPs_7192 0 0 1 0 1 Cytosol 1 0.500231643896176 1 0.999536712207648 hm5C_site_9910 DeepMRMD:1;iRNA_m5C:0.999536712207648 9911 chr7 6617237 6617237 1 + C T rs115316495 6617226 + 6617206 6617246 41 TCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCGCC TCCCCTTGTGTGTAGGGCCGCCGTCCCACCCTCACCTCGCC < 41bp 1 0.109194259373896 1 0.127444833517075 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617226 chr7:6617237 . . 0 32 hm5C_associated_SNPs_7193 0 0 1 0 1 Cytosol 1 0.500231978592287 1 0.999536042815425 hm5C_site_9911 DeepMRMD:1;iRNA_m5C:0.999536042815425 9912 chr7 6617237 6617237 1 + C T rs115316495 6617227 + 6617207 6617247 41 CCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCGCCC CCCCTTGTGTGTAGGGCCGCCGTCCCACCCTCACCTCGCCC < 41bp 1 0.143191652068309 1 0.0711108446121216 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617227 chr7:6617237 . . 0 31 hm5C_associated_SNPs_7194 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9912 DeepMRMD:1;iRNA_m5C:0.999536712157815 9913 chr7 6617240 6617240 1 + C G rs572873463 6617223 + 6617203 6617243 41 CTTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTC CTTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCAGCTC < 41bp 1 0.333270810386897 1 0.093106746673584 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617223 chr7:6617240 . . 0 38 hm5C_associated_SNPs_7195 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157811 hm5C_site_9913 DeepMRMD:1;iRNA_m5C:0.999536712157811 9914 chr7 6617240 6617240 1 + C G rs572873463 6617224 + 6617204 6617244 41 TTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCG TTTCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCAGCTCG < 41bp 1 0.629046427132655 1 0.155768603086472 experiment 0.74190714573469 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617224 chr7:6617240 . . 0 37 hm5C_associated_SNPs_7196 0 0 1 0 1 Cytosol 1 0.500231643920921 1 0.999536712158157 hm5C_site_9914 DeepMRMD:1;iRNA_m5C:0.999536712158157 9915 chr7 6617240 6617240 1 + C G rs572873463 6617226 + 6617206 6617246 41 TCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCGCC TCCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCAGCTCGCC < 41bp 1 0.0869605864427489 1 0.0539598166942596 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617226 chr7:6617240 . . 0 35 hm5C_associated_SNPs_7197 0 0 1 0 1 Cytosol 1 0.500231643925234 1 0.999536712149533 hm5C_site_9915 DeepMRMD:1;iRNA_m5C:0.999536712149533 9916 chr7 6617240 6617240 1 + C G rs572873463 6617227 + 6617207 6617247 41 CCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCGCCC CCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCAGCTCGCCC < 41bp 1 0.167353972021474 1 0.0590359568595886 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617227 chr7:6617240 . . 0 34 hm5C_associated_SNPs_7198 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9916 DeepMRMD:1;iRNA_m5C:0.999536712157815 9917 chr7 6617247 6617247 1 + C G rs11559147 6617227 + 6617207 6617247 41 CCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCGCCC CCCCTTGTGTGTAGGGCCGCCGTCCCACCCCCACCTCGCCG < 41bp 1 0.173852024062746 1 0.058589905500412 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617227 chr7:6617247 . . 0 41 hm5C_associated_SNPs_7199 0 0 1 0 1 Cytosol 1 0.500231643921231 1 0.999536712157538 hm5C_site_9917 DeepMRMD:1;iRNA_m5C:0.999536712157538 9918 chr7 6631414 6631414 1 + G T rs10260097 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGTATGAGCT < 41bp 1 0.154356010968678 1 0.270443230867386 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631414 synonymous SNV . 0 34 hm5C_associated_SNPs_7200 0 0 1 0 2 chromatin 1 0.500231644038254 1 0.999536711923491 hm5C_site_9918 DeepMRMD:1;iRNA_m5C:0.999536711923491 9919 chr7 6631414 6631414 1 + G T rs10260097 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACAGCCGTATGAGCTT < 41bp 1 0.452280309145778 1 0.488619714975357 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631414 synonymous SNV . 0 33 hm5C_associated_SNPs_7201 0 0 1 0 2 chromatin 1 0.500231660020788 1 0.999536679958424 hm5C_site_9919 DeepMRMD:1;iRNA_m5C:0.999536679958424 9920 chr7 6660831 6660831 1 + C T rs61745889 6660834 + 6660814 6660854 41 ACAGCGGCCAGCAGTCTCGGCCCCAGTGGGGGCCAGTGAAA ACAGCGGCCAGCAGTCTTGGCCCCAGTGGGGGCCAGTGAAA < 41bp 1 0.491272226364901 1 0.25109401345253 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6660834 chr7:6660831 nonsynonymous SNV 0.002 1 18 hm5C_associated_SNPs_7202 0 0 1 0 1 exosome 1 0.500231643921087 1 0.999536712157826 hm5C_site_9920 DeepMRMD:1;iRNA_m5C:0.999536712157826 9921 chr7 6660831 6660831 1 + C T rs61745889 6660835 + 6660815 6660855 41 CAGCGGCCAGCAGTCTCGGCCCCAGTGGGGGCCAGTGAAAT CAGCGGCCAGCAGTCTTGGCCCCAGTGGGGGCCAGTGAAAT < 41bp 1 0.146778957794167 1 0.571804702281952 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6660835 chr7:6660831 nonsynonymous SNV 0.002 1 17 hm5C_associated_SNPs_7203 0 0 1 0 1 exosome 1 0.500231643921115 0.856390595436096 0.999536712157771 hm5C_site_9921 DeepMRMD:0.856390595436096;iRNA_m5C:0.999536712157771 9922 chr7 6660831 6660831 1 + C T rs61745889 6660836 + 6660816 6660856 41 AGCGGCCAGCAGTCTCGGCCCCAGTGGGGGCCAGTGAAATC AGCGGCCAGCAGTCTTGGCCCCAGTGGGGGCCAGTGAAATC < 41bp 1 0.307722922798878 1 0.196472346782684 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6660836 chr7:6660831 nonsynonymous SNV 0.002 1 16 hm5C_associated_SNPs_7204 0 0 1 0 1 exosome 1 0.500231643921026 1 0.999536712157947 hm5C_site_9922 DeepMRMD:1;iRNA_m5C:0.999536712157947 9923 chr7 6660831 6660831 1 + C T rs61745889 6660837 + 6660817 6660857 41 GCGGCCAGCAGTCTCGGCCCCAGTGGGGGCCAGTGAAATCG GCGGCCAGCAGTCTTGGCCCCAGTGGGGGCCAGTGAAATCG < 41bp 1 0.466258435416865 1 0.715814828872681 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6660837 chr7:6660831 nonsynonymous SNV 0.002 1 15 hm5C_associated_SNPs_7205 0 0 1 0 1 exosome 1 0.500231643921121 0.568370342254638 0.999536712157758 hm5C_site_9923 DeepMRMD:0.568370342254638;iRNA_m5C:0.999536712157758 9924 chr7 6660831 6660831 1 + C T rs61745889 6660846 + 6660826 6660866 41 AGTCTCGGCCCCAGTGGGGGCCAGTGAAATCGCTGAGGAAA AGTCTTGGCCCCAGTGGGGGCCAGTGAAATCGCTGAGGAAA < 41bp 1 0.221600514606953 1 0.596356749534607 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6660846 chr7:6660831 nonsynonymous SNV 0.002 1 6 hm5C_associated_SNPs_7206 0 0 1 0 1 exosome 1 0.500231643919974 0.807286500930786 0.999536712160051 hm5C_site_9924 DeepMRMD:0.807286500930786;iRNA_m5C:0.999536712160051 9925 chr7 6660831 6660831 1 + C T rs61745889 6660847 + 6660827 6660867 41 GTCTCGGCCCCAGTGGGGGCCAGTGAAATCGCTGAGGAAAC GTCTTGGCCCCAGTGGGGGCCAGTGAAATCGCTGAGGAAAC < 41bp 1 0.259080243522784 1 0.81473571062088 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6660847 chr7:6660831 nonsynonymous SNV 0.002 1 5 hm5C_associated_SNPs_7207 0 0 1 0 1 exosome 1 0.500231643921093 0.37052857875824 0.999536712157813 hm5C_site_9925 DeepMRMD:0.37052857875824;iRNA_m5C:0.999536712157813 9926 chr7 6661256 6661256 1 + C G rs11971880 6661265 + 6661245 6661285 41 AGGAACAGTTACAGCAGCAGCAGCTGCTACAACAGCAGGAA AGGAACAGTTAGAGCAGCAGCAGCTGCTACAACAGCAGGAA < 41bp 1 0.432202684775922 1 0.484978526830673 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6661265 chr7:6661256 nonsynonymous SNV 0.028 2 12 hm5C_associated_SNPs_7208 0 0 0 0 0 exosome 1 0.500231753027783 1 0.999536493944434 hm5C_site_9926 DeepMRMD:1;iRNA_m5C:0.999536493944434 9927 chr7 6769762 6769762 1 + G C rs573751696 6769749 + 6769729 6769769 41 TGGCCCAGGCCGCCGCTGTACGGTGAGTCCCAGGGAGGCGG TGGCCCAGGCCGCCGCTGTACGGTGAGTCCCAGCGAGGCGG < 41bp 1 0.538988629365618 1 0.299531251192093 experiment 0.922022741268764 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF12;PMS2CL ENSG00000187953 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:6769749 chr7:6769762 . . 0 34 hm5C_associated_SNPs_7209 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9927 DeepMRMD:1;iRNA_m5C:0.999536712157815 9928 chr7 8009077 8009077 1 + C A rs144036658 8009085 + 8009065 8009105 41 GGGGTCCCCGCCCGCCGTCGCCGCCGCCGGGAGCGGGAACG GGGGTCCCCGCCAGCCGTCGCCGCCGCCGGGAGCGGGAACG < 41bp 1 0.538078813537329 1 0.143094778060913 experiment 0.923842372925343 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8009085 chr7:8009077 synonymous SNV . 0 13 hm5C_associated_SNPs_7210 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9928 DeepMRMD:1;iRNA_m5C:0.999536712157815 9929 chr7 8009077 8009077 1 + C A rs144036658 8009088 + 8009068 8009108 41 GTCCCCGCCCGCCGTCGCCGCCGCCGGGAGCGGGAACGGTG GTCCCCGCCAGCCGTCGCCGCCGCCGGGAGCGGGAACGGTG < 41bp 1 0.462733447672541 1 0.137894570827484 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8009088 chr7:8009077 synonymous SNV . 0 10 hm5C_associated_SNPs_7211 0 0 0 0 0 Ribosome 1 0.50023171768027 1 0.999536564639461 hm5C_site_9929 DeepMRMD:1;iRNA_m5C:0.999536564639461 9930 chr7 12250939 12250939 1 + G A rs111783004 12250938 + 12250918 12250958 41 CCAGCTCTACGGCGGCCGCGCGCTCCAGGCCGGTCGCTCCA CCAGCTCTACGGCGGCCGCGCACTCCAGGCCGGTCGCTCCA < 41bp 1 0.395509594736359 1 0.111116081476212 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM106B ENSG00000106460 UTR5 Human protein_coding chr7:12250938 chr7:12250939 . . 0 22 hm5C_associated_SNPs_7212 0 0 1 0 0 Ribosome 1 0.500231617178567 1 0.999536765642867 hm5C_site_9930 DeepMRMD:1;iRNA_m5C:0.999536765642867 9931 chr7 12269417 12269417 1 + C A rs3173615 12269401 + 12269381 12269421 41 AAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATT AAACAGTTATTGGAAAGGCACGCTTAAACAACATAAACATT < 41bp 1 0.19289521151188 1 0.0455610752105713 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM106B ENSG00000106460 CDS Human protein_coding chr7:12269401 chr7:12269417 nonsynonymous SNV 0.988 2 37 hm5C_associated_SNPs_7213 0 1 1 0 1 Ribosome 1 0.500230975419221 1 0.999538049161557 hm5C_site_9931 DeepMRMD:1;iRNA_m5C:0.999538049161557 9932 chr7 16793504 16793504 1 + A C rs6975847 16793503 + 16793483 16793523 41 CGTTGCTGCCCCGCCTGGGCCAGGCCCCAAAGGCAAGGACA CGTTGCTGCCCCGCCTGGGCCCGGCCCCAAAGGCAAGGACA < 41bp 1 0.621056393321936 1 0.192916840314865 experiment 0.757887213356128 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN13 ENSG00000106537 UTR5 Human protein_coding chr7:16793503 chr7:16793504 . . 0 22 hm5C_associated_SNPs_7216 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9932 DeepMRMD:1;iRNA_m5C:0.999536712157815 9933 chr7 16823095 16823095 1 + G A rs11491 16823094 + 16823074 16823114 41 GAACCAGAAAGACCCCCGCGCGAATCCTAGTGCATTCCTTT GAACCAGAAAGACCCCCGCGCAAATCCTAGTGCATTCCTTT < 41bp 1 0.150016847821721 1 0.101660639047623 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16823094 chr7:16823095 synonymous SNV . 0 22 hm5C_associated_SNPs_7217 0 0 1 0 1 Ribosome 1 0.50023164392503 1 0.99953671214994 hm5C_site_9933 DeepMRMD:1;iRNA_m5C:0.99953671214994 9934 chr7 17338513 17338513 1 + C G rs553785497 17338503 + 17338483 17338523 41 GACGGTCACGGGGCGCGGCGCCACCGTGAGCGACCCAGGCC GACGGTCACGGGGCGCGGCGCCACCGTGAGGGACCCAGGCC < 41bp 1 0.357408382772634 1 0.162587732076645 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AHR ENSG00000237773 ncRNA_intronic Human antisense chr7:17338503 chr7:17338513 . . 0 31 hm5C_associated_SNPs_7218 0 0 0 0 0 Endoplasmic reticulum 1 0.500231742540886 1 0.999536514918227 hm5C_site_9934 DeepMRMD:1;iRNA_m5C:0.999536514918227 9935 chr7 17338513 17338513 1 + C G rs553785497 17338506 + 17338486 17338526 41 GGTCACGGGGCGCGGCGCCACCGTGAGCGACCCAGGCCAGG GGTCACGGGGCGCGGCGCCACCGTGAGGGACCCAGGCCAGG < 41bp 1 0.58159948384832 1 0.223970621824265 experiment 0.836801032303361 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AHR ENSG00000237773 ncRNA_intronic Human antisense chr7:17338506 chr7:17338513 . . 0 28 hm5C_associated_SNPs_7219 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921183 1 0.999536712157634 hm5C_site_9935 DeepMRMD:1;iRNA_m5C:0.999536712157634 9936 chr7 20371273 20371273 1 + C G rs2240046 20371265 + 20371245 20371285 41 ATGCCGAGCGGTGCCCGGGCCCGCTTACCTGCACCGCTTGC ATGCCGAGCGGTGCCCGGGCCCGCTTACGTGCACCGCTTGC < 41bp 1 0.385172783056338 1 0.136254847049713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LOC101927811 ENSG00000271133 ncRNA_exonic Human antisense chr7:20371265 chr7:20371273 . . 0 29 hm5C_associated_SNPs_7221 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9936 DeepMRMD:1;iRNA_m5C:0.999536712157815 9937 chr7 21631014 21631014 1 + G A rs201261243 21631019 + 21630999 21631039 41 AGCACAGAGTTGAGCGCACACAGAAAAACGTGAAGGTGATC AGCACAGAGTTGAGCACACACAGAAAAACGTGAAGGTGATC < 41bp 1 0.518690797887594 1 0.566570222377777 experiment 0.962618404224812 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21631019 chr7:21631014 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_7222 0 0 0 0 0 nucleolus 1 0.500231643963298 0.866859555244446 0.999536712073403 hm5C_site_9937 DeepMRMD:0.866859555244446;iRNA_m5C:0.999536712073403 9938 chr7 23221750 23221750 1 + G C rs368129535 23221740 + 23221720 23221760 41 TTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTG TTCTTCCTTCAAGGCCGGTGCCGCTTTGGACATCGGTGCTG < 41bp 1 0.412507583159109 1 0.175082236528397 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221740 chr7:23221750 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_7223 0 0 1 3 1 Cytosol 1 0.500231644504676 1 0.999536710990647 hm5C_site_9938 DeepMRMD:1;iRNA_m5C:0.999536710990647 9939 chr7 23221750 23221750 1 + G C rs368129535 23221741 + 23221721 23221761 41 TCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTGG TCTTCCTTCAAGGCCGGTGCCGCTTTGGACATCGGTGCTGG < 41bp 1 0.586129395149356 1 0.114789605140686 experiment 0.827741209701289 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221741 chr7:23221750 nonsynonymous SNV 0.999 1 30 hm5C_associated_SNPs_7224 0 0 1 3 1 Cytosol 1 0.500229515882331 1 0.999540968235338 hm5C_site_9939 DeepMRMD:1;iRNA_m5C:0.999540968235338 9940 chr7 23338987 23338987 1 + C A rs375849242 23339007 + 23338987 23339027 41 CGTGTGGCGCGGCTGCTCGCCCCACTAATGTGGCGCAGGGC AGTGTGGCGCGGCTGCTCGCCCCACTAATGTGGCGCAGGGC < 41bp 1 0.220056879460469 1 0.396957457065582 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALSU1 ENSG00000156928 CDS Human protein_coding chr7:23339007 chr7:23338987 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_7226 0 0 1 0 0 Ribosome 1 0.500231600177368 1 0.999536799645263 hm5C_site_9940 DeepMRMD:1;iRNA_m5C:0.999536799645263 9941 chr7 27827103 27827103 1 + T A rs11540483 27827088 + 27827068 27827108 41 CCAAGCTTATGTCAGAGGTCCAGACTTTAAAAAATTTAGAT CCAAGCTTATGTCAGAGGTCCAGACTTTAAAAAATATAGAT < 41bp 1 0.1449688784135 1 0.321991413831711 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27827088 chr7:27827103 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_7228 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9941 DeepMRMD:1;iRNA_m5C:0.999536712157815 9942 chr7 28859859 28859859 1 + G A rs4722856 28859840 + 28859820 28859860 41 GGAGACACTAGGGAAGGGAGCTTTGTAAGCCTTGATTGCGA GGAGACACTAGGGAAGGGAGCTTTGTAAGCCTTGATTGCAA < 41bp 1 0.132663816521661 1 0.140374779701233 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CREB5 ENSG00000146592 UTR3 Human protein_coding chr7:28859840 chr7:28859859 . . 0 40 hm5C_associated_SNPs_7229 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_9942 DeepMRMD:1;iRNA_m5C:0.999536712157815 9943 chr7 30661069 30661069 1 + C A rs113958280 30661058 + 30661038 30661078 41 TCGTTCCTGTTATGACCTCTCCTGTCATGCACGAGCCACCA TCGTTCCTGTTATGACCTCTCCTGTCATGCAAGAGCCACCA < 41bp 1 0.234448155888673 1 0.244148850440979 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GARS ENSG00000106105 CDS Human protein_coding chr7:30661058 chr7:30661069 synonymous SNV . 0 32 hm5C_associated_SNPs_7230 4 0 1 0 0 Cytosol 1 0.500232642642561 1 0.999534714714879 hm5C_site_9943 DeepMRMD:1;iRNA_m5C:0.999534714714879 Distal spinal muscular atrophy Distal spinal muscular atrophy 9944 chr7 30931794 30931794 1 + G A rs112087094 30931802 + 30931782 30931822 41 ACCCAAGACTGTGCTGGGGACCCAGTGTGTTGCTGGGTCCC ACCCAAGACTGTACTGGGGACCCAGTGTGTTGCTGGGTCCC < 41bp 1 0.197253051679547 1 0.19154155254364 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INMT-MINDY4 ENSG00000106125 UTR3 Human protein_coding chr7:30931802 chr7:30931794 . . 0 13 hm5C_associated_SNPs_7231 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9944 DeepMRMD:1;iRNA_m5C:0.999536712157815 9945 chr7 30931794 30931794 1 + G A rs112087094 30931803 + 30931783 30931823 41 CCCAAGACTGTGCTGGGGACCCAGTGTGTTGCTGGGTCCCC CCCAAGACTGTACTGGGGACCCAGTGTGTTGCTGGGTCCCC < 41bp 1 0.337602221099408 1 0.320002794265747 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INMT-MINDY4 ENSG00000106125 UTR3 Human protein_coding chr7:30931803 chr7:30931794 . . 0 12 hm5C_associated_SNPs_7232 0 0 0 0 0 unknown 1 0.500231645743481 1 0.999536708513038 hm5C_site_9945 DeepMRMD:1;iRNA_m5C:0.999536708513038 9946 chr7 30931794 30931794 1 + G A rs112087094 30931804 + 30931784 30931824 41 CCAAGACTGTGCTGGGGACCCAGTGTGTTGCTGGGTCCCCT CCAAGACTGTACTGGGGACCCAGTGTGTTGCTGGGTCCCCT < 41bp 1 0.622329781066335 1 0.531772196292877 experiment 0.75534043786733 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INMT-MINDY4 ENSG00000106125 UTR3 Human protein_coding chr7:30931804 chr7:30931794 . . 0 11 hm5C_associated_SNPs_7233 0 0 0 0 0 unknown 1 0.500231643921092 0.936455607414246 0.999536712157815 hm5C_site_9946 DeepMRMD:0.936455607414246;iRNA_m5C:0.999536712157815 9947 chr7 30931817 30931817 1 + G A rs140974842 30931802 + 30931782 30931822 41 ACCCAAGACTGTGCTGGGGACCCAGTGTGTTGCTGGGTCCC ACCCAAGACTGTGCTGGGGACCCAGTGTGTTGCTGAGTCCC < 41bp 1 0.223107306458181 1 0.123558133840561 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INMT-MINDY4 ENSG00000106125 UTR3 Human protein_coding chr7:30931802 chr7:30931817 . . 0 36 hm5C_associated_SNPs_7234 0 0 0 0 0 unknown 1 0.500231643921095 1 0.99953671215781 hm5C_site_9947 DeepMRMD:1;iRNA_m5C:0.99953671215781 9948 chr7 30931817 30931817 1 + G A rs140974842 30931803 + 30931783 30931823 41 CCCAAGACTGTGCTGGGGACCCAGTGTGTTGCTGGGTCCCC CCCAAGACTGTGCTGGGGACCCAGTGTGTTGCTGAGTCCCC < 41bp 1 0.353955186593484 1 0.428788214921951 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INMT-MINDY4 ENSG00000106125 UTR3 Human protein_coding chr7:30931803 chr7:30931817 . . 0 35 hm5C_associated_SNPs_7235 0 0 0 0 0 unknown 1 0.50023164401747 1 0.999536711965061 hm5C_site_9948 DeepMRMD:1;iRNA_m5C:0.999536711965061 9949 chr7 30931817 30931817 1 + G A rs140974842 30931804 + 30931784 30931824 41 CCAAGACTGTGCTGGGGACCCAGTGTGTTGCTGGGTCCCCT CCAAGACTGTGCTGGGGACCCAGTGTGTTGCTGAGTCCCCT < 41bp 1 0.621470067605228 1 0.541874945163727 experiment 0.757059864789543 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INMT-MINDY4 ENSG00000106125 UTR3 Human protein_coding chr7:30931804 chr7:30931817 . . 0 34 hm5C_associated_SNPs_7236 0 0 0 0 0 unknown 1 0.500231643927337 0.916250109672546 0.999536712145326 hm5C_site_9949 DeepMRMD:0.916250109672546;iRNA_m5C:0.999536712145326 9950 chr7 30931817 30931817 1 + G A rs140974842 30931820 + 30931800 30931840 41 GACCCAGTGTGTTGCTGGGTCCCCTCCCAGCTGAGCTGTGA GACCCAGTGTGTTGCTGAGTCCCCTCCCAGCTGAGCTGTGA < 41bp 1 0.225177625670123 1 0.0896428227424622 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INMT-MINDY4 ENSG00000106125 UTR3 Human protein_coding chr7:30931820 chr7:30931817 . . 0 18 hm5C_associated_SNPs_7237 0 0 0 0 0 unknown 1 0.500233945500267 1 0.999532108999467 hm5C_site_9950 DeepMRMD:1;iRNA_m5C:0.999532108999467 9951 chr7 30931817 30931817 1 + G A rs140974842 30931821 + 30931801 30931841 41 ACCCAGTGTGTTGCTGGGTCCCCTCCCAGCTGAGCTGTGAC ACCCAGTGTGTTGCTGAGTCCCCTCCCAGCTGAGCTGTGAC < 41bp 1 0.0447625634485206 1 0.117900103330612 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INMT-MINDY4 ENSG00000106125 UTR3 Human protein_coding chr7:30931821 chr7:30931817 . . 0 17 hm5C_associated_SNPs_7238 0 0 0 0 0 unknown 1 0.50023164392109 1 0.999536712157821 hm5C_site_9951 DeepMRMD:1;iRNA_m5C:0.999536712157821 9952 chr7 30931817 30931817 1 + G A rs140974842 30931822 + 30931802 30931842 41 CCCAGTGTGTTGCTGGGTCCCCTCCCAGCTGAGCTGTGACT CCCAGTGTGTTGCTGAGTCCCCTCCCAGCTGAGCTGTGACT < 41bp 1 0.0527504340058759 1 0.0754828453063965 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INMT-MINDY4 ENSG00000106125 UTR3 Human protein_coding chr7:30931822 chr7:30931817 . . 0 16 hm5C_associated_SNPs_7239 0 0 0 0 0 unknown 1 0.500231644027239 1 0.999536711945522 hm5C_site_9952 DeepMRMD:1;iRNA_m5C:0.999536711945522 9953 chr7 32768371 32768371 1 + C T rs71534334 32768388 + 32768368 32768408 41 CGGCGCCGCGGTGGCCCCGGCAGCCCCGCGCAGCTGTTTCC CGGTGCCGCGGTGGCCCCGGCAGCCCCGCGCAGCTGTTTCC < 41bp 1 0.435362562665729 1 0.175409317016602 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNRF2P1 ENSG00000237004 ncRNA_exonic Human processed_pseudogene chr7:32768388 chr7:32768371 . . 0 4 hm5C_associated_SNPs_7242 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9953 DeepMRMD:1;iRNA_m5C:0.999536712157815 9954 chr7 32768379 32768379 1 + T C rs71534335 32768388 + 32768368 32768408 41 CGGCGCCGCGGTGGCCCCGGCAGCCCCGCGCAGCTGTTTCC CGGCGCCGCGGCGGCCCCGGCAGCCCCGCGCAGCTGTTTCC < 41bp 1 0.483420084483987 1 0.302044868469238 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNRF2P1 ENSG00000237004 ncRNA_exonic Human processed_pseudogene chr7:32768388 chr7:32768379 . . 0 12 hm5C_associated_SNPs_7243 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9954 DeepMRMD:1;iRNA_m5C:0.999536712157815 9955 chr7 32768385 32768385 1 + C G rs546149523 32768376 + 32768356 32768396 41 CAGCGCCTCGGGCGGCGCCGCGGTGGCCCCGGCAGCCCCGC CAGCGCCTCGGGCGGCGCCGCGGTGGCCCGGGCAGCCCCGC < 41bp 1 0.672630490199993 1 0.921237587928772 experiment 0.654739019600013 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNRF2P1 ENSG00000237004 ncRNA_exonic Human processed_pseudogene chr7:32768376 chr7:32768385 . . 0 30 hm5C_associated_SNPs_7244 0 0 0 0 0 unknown 1 0.500231643921088 0.157524824142456 0.999536712157825 hm5C_site_9955 DeepMRMD:0.157524824142456;iRNA_m5C:0.999536712157825 9956 chr7 32768385 32768385 1 + C G rs546149523 32768388 + 32768368 32768408 41 CGGCGCCGCGGTGGCCCCGGCAGCCCCGCGCAGCTGTTTCC CGGCGCCGCGGTGGCCCGGGCAGCCCCGCGCAGCTGTTTCC < 41bp 1 0.454008849780588 1 0.123744457960129 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNRF2P1 ENSG00000237004 ncRNA_exonic Human processed_pseudogene chr7:32768388 chr7:32768385 . . 0 18 hm5C_associated_SNPs_7245 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_9956 DeepMRMD:1;iRNA_m5C:0.999536712157815 9957 chr7 33014893 33014893 1 + C T rs202159628 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCTCCCGAGTTGCCCTCG < 41bp 1 0.606703397186845 1 0.826075077056885 experiment 0.786593205626311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014893 nonsynonymous SNV 0.985 4 26 hm5C_associated_SNPs_7246 0 0 0 0 2 Ribosome 1 0.500243359829476 0.34784984588623 0.999513280341048 hm5C_site_9957 DeepMRMD:0.34784984588623;iRNA_m5C:0.999513280341048 9958 chr7 33014893 33014893 1 + C T rs202159628 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCTCCCGAGTTGCCCTCGGACC < 41bp 1 0.223150121771052 1 0.32574200630188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014893 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_7247 0 0 0 0 2 Ribosome 1 0.500231643926712 1 0.999536712146576 hm5C_site_9958 DeepMRMD:1;iRNA_m5C:0.999536712146576 9959 chr7 33045738 33045738 1 + C T rs118113675 33045751 + 33045731 33045771 41 GCAGAGTCTCCCTTTGTCGCCAGGCTGGAGTGCAGTGGTGC GCAGAGTTTCCCTTTGTCGCCAGGCTGGAGTGCAGTGGTGC < 41bp 1 0.419706908986355 1 0.440911293029785 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control FKBP9 ENSG00000122642 UTR3 Human protein_coding chr7:33045751 chr7:33045738 . . 0 8 hm5C_associated_SNPs_7248 0 0 1 0 0 Ribosome 1 0.500231848706034 1 0.999536302587933 hm5C_site_9959 DeepMRMD:1;iRNA_m5C:0.999536302587933 9960 chr7 33045749 33045749 1 + G A rs77844797 33045751 + 33045731 33045771 41 GCAGAGTCTCCCTTTGTCGCCAGGCTGGAGTGCAGTGGTGC GCAGAGTCTCCCTTTGTCACCAGGCTGGAGTGCAGTGGTGC < 41bp 1 0.460131579442035 1 0.434269368648529 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control FKBP9 ENSG00000122642 UTR3 Human protein_coding chr7:33045751 chr7:33045749 . . 0 19 hm5C_associated_SNPs_7249 0 0 1 0 0 Ribosome 1 0.500231371085777 1 0.999537257828447 hm5C_site_9960 DeepMRMD:1;iRNA_m5C:0.999537257828447 9961 chr7 35735906 35735906 1 + T G rs562463249 35735905 + 35735885 35735925 41 GACTAGTTGGATTTCCTAGGCTGGCTAAGAATCCCTAAGCC GACTAGTTGGATTTCCTAGGCGGGCTAAGAATCCCTAAGCC < 41bp 1 0.471271322899993 1 0.927290976047516 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOC101930085 ENSG00000271122 ncRNA_exonic Human antisense chr7:35735905 chr7:35735906 . . 0 22 hm5C_associated_SNPs_7250 0 0 1 0 0 unknown 1 0.500231643921092 0.145418047904968 0.999536712157815 hm5C_site_9961 DeepMRMD:0.145418047904968;iRNA_m5C:0.999536712157815 9962 chr7 35943900 35943900 1 + T C rs148369403 35943897 + 35943877 35943917 41 AACAAGAAGAAAGGGAAGATCTTTTAAACTCTCTATTGACC AACAAGAAGAAAGGGAAGATCTTCTAAACTCTCTATTGACC < 41bp 1 0.131874326401855 1 0.132549971342087 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35943897 chr7:35943900 synonymous SNV . 0 24 hm5C_associated_SNPs_7251 0 0 1 0 1 chromatin 1 0.500219860785682 1 0.999560278428636 hm5C_site_9962 DeepMRMD:1;iRNA_m5C:0.999560278428636 9963 chr7 35944757 35944757 1 + C G rs150305906 35944746 + 35944726 35944766 41 CAAAATTGTGAAGCTAATGACCAACCTGTTTCTACCTATAT CAAAATTGTGAAGCTAATGACCAACCTGTTTGTACCTATAT < 41bp 1 0.0456849275798679 1 0.124957710504532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT7 ENSG00000122545 UTR3 Human protein_coding chr7:35944746 chr7:35944757 . . 0 32 hm5C_associated_SNPs_7252 0 0 0 5 0 chromatin 1 0.500221357719132 1 0.999557284561737 hm5C_site_9963 DeepMRMD:1;iRNA_m5C:0.999557284561737 9964 chr7 36445855 36445855 1 + A C rs61737563 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCCGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG < 41bp 1 0.528029370495431 1 0.391947448253632 experiment 0.943941259009139 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445855 synonymous SNV . 0 8 hm5C_associated_SNPs_7253 1 0 1 0 1 Nucleus 1 0.500231643921173 1 0.999536712157654 hm5C_site_9964 DeepMRMD:1;iRNA_m5C:0.999536712157654 not specified not specified 9965 chr7 36445856 36445856 1 + G A rs197367 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCAAACCTCTGCTTTCAAATGCCTCGGCAACTCCAG < 41bp 1 0.486970358789547 1 0.31701922416687 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445856 nonsynonymous SNV 0.004 0 9 hm5C_associated_SNPs_7254 1 0 1 0 1 Nucleus 1 0.500231643921053 1 0.999536712157894 hm5C_site_9965 DeepMRMD:1;iRNA_m5C:0.999536712157894 not specified not specified 9966 chr7 36458974 36458974 1 + G A rs547520121 36458984 + 36458964 36459004 41 AGAGCCAAGAGGAGATGGATCAAGCATTAGCAGAAAGCAGC AGAGCCAAGAAGAGATGGATCAAGCATTAGCAGAAAGCAGC < 41bp 1 0.447546586416319 1 0.454188138246536 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36458984 chr7:36458974 synonymous SNV . 0 11 hm5C_associated_SNPs_7255 0 0 1 0 0 Nucleus 1 0.500231643921123 1 0.999536712157754 hm5C_site_9966 DeepMRMD:1;iRNA_m5C:0.999536712157754 9967 chr7 36492212 36492212 1 + C A rs2052197 36492192 + 36492172 36492212 41 AACCTGATGCTTGCTACAAACCTATTGGAAAGCCTTAAACC AACCTGATGCTTGCTACAAACCTATTGGAAAGCCTTAAACA < 41bp 1 0.0888780227018719 1 0.0647245049476624 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANLN ENSG00000011426 UTR3 Human protein_coding chr7:36492192 chr7:36492212 . . 0 41 hm5C_associated_SNPs_7258 0 0 1 0 0 Nucleus 1 0.500231643920995 1 0.99953671215801 hm5C_site_9967 DeepMRMD:1;iRNA_m5C:0.99953671215801 9968 chr7 38217910 38217910 1 + G A rs374440592 38217930 + 38217910 38217950 41 GGACTGGGTCCCGGTCACGCCCCGCCAAGCCCCGCCCCTCA AGACTGGGTCCCGGTCACGCCCCGCCAAGCCCCGCCCCTCA < 41bp 1 0.582735873077567 1 0.441054612398148 experiment 0.834528253844865 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STARD3NL ENSG00000010270 UTR5 Human protein_coding chr7:38217930 chr7:38217910 . . 0 1 hm5C_associated_SNPs_7261 0 0 1 0 0 chromatin 1 0.500231643957854 1 0.999536712084291 hm5C_site_9968 DeepMRMD:1;iRNA_m5C:0.999536712084291 9969 chr7 39612201 39612201 1 + C T rs34189922 39612212 + 39612192 39612232 41 GAGCATGCACATTCAGAAAACCCAAGCCCCACATGGATTTT GAGCATGCATATTCAGAAAACCCAAGCCCCACATGGATTTT < 41bp 1 0.529247530858247 1 0.0733033418655396 experiment 0.941504938283505 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control YAE1D1 ENSG00000241127 CDS Human protein_coding chr7:39612212 chr7:39612201 nonsynonymous SNV 0.920 0 10 hm5C_associated_SNPs_7263 0 0 1 0 0 Ribosome 1 0.500231613182729 1 0.999536773634542 hm5C_site_9969 DeepMRMD:1;iRNA_m5C:0.999536773634542 9970 chr7 39612201 39612201 1 + C T rs34189922 39612213 + 39612193 39612233 41 AGCATGCACATTCAGAAAACCCAAGCCCCACATGGATTTTG AGCATGCATATTCAGAAAACCCAAGCCCCACATGGATTTTG < 41bp 1 0.224612617206473 1 0.0855641067028046 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control YAE1D1 ENSG00000241127 CDS Human protein_coding chr7:39612213 chr7:39612201 nonsynonymous SNV 0.920 0 9 hm5C_associated_SNPs_7264 0 0 1 0 0 Ribosome 1 0.500231643929933 1 0.999536712140134 hm5C_site_9970 DeepMRMD:1;iRNA_m5C:0.999536712140134 9971 chr7 39612201 39612201 1 + C T rs34189922 39612218 + 39612198 39612238 41 GCACATTCAGAAAACCCAAGCCCCACATGGATTTTGGAACA GCATATTCAGAAAACCCAAGCCCCACATGGATTTTGGAACA < 41bp 1 0.581415542869029 1 0.20612433552742 experiment 0.837168914261942 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control YAE1D1 ENSG00000241127 CDS Human protein_coding chr7:39612218 chr7:39612201 nonsynonymous SNV 0.920 0 4 hm5C_associated_SNPs_7265 0 0 1 0 0 Ribosome 1 0.500231643922274 1 0.999536712155451 hm5C_site_9971 DeepMRMD:1;iRNA_m5C:0.999536712155451 9972 chr7 39991447 39991447 1 + C T rs3735137 39991428 + 39991408 39991448 41 AGCAGCTGGCGCCGCTCTCGCAGTCCCTACAGCCCTGTGCT AGCAGCTGGCGCCGCTCTCGCAGTCCCTACAGCCCTGTGTT < 41bp 1 0.240479802478269 1 0.779687166213989 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:39991428 chr7:39991447 nonsynonymous SNV 0.992 0 40 hm5C_associated_SNPs_7266 0 0 1 0 1 Nucleus 1 0.500231644504382 0.440625667572022 0.999536710991237 hm5C_site_9972 DeepMRMD:0.440625667572022;iRNA_m5C:0.999536710991237 9973 chr7 43506113 43506113 1 + A C rs138489968 43506109 + 43506089 43506129 41 AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTCATCA AATCACCTTGCTGCTGCAGTCCCCCGCGGTCAAGTTCATCA < 41bp 1 0.0876807765467729 1 0.0361987054347992 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HECW1 ENSG00000002746 CDS Human protein_coding chr7:43506109 chr7:43506113 synonymous SNV . 0 25 hm5C_associated_SNPs_7267 0 0 0 0 2 Cytosol 1 0.500231643949187 1 0.999536712101627 hm5C_site_9973 DeepMRMD:1;iRNA_m5C:0.999536712101627 9974 chr7 43580831 43580831 1 + G A rs2304320 43580837 + 43580817 43580857 41 GACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG GACGCTTTCTTCACAAGGCCCTTCTACAAGGCACTCCTGAG < 41bp 1 0.0332313660929603 1 0.104256421327591 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43580837 chr7:43580831 synonymous SNV . 0 15 hm5C_associated_SNPs_7268 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9974 DeepMRMD:1;iRNA_m5C:0.999536712157815 9975 chr7 43591832 43591832 1 + G A rs56111512 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTCAAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC < 41bp 1 0.143803602998324 1 0.169981390237808 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591832 synonymous SNV . 0 10 hm5C_associated_SNPs_7269 0 0 0 0 1 Cytosol 1 0.500235875580856 1 0.999528248838289 hm5C_site_9975 DeepMRMD:1;iRNA_m5C:0.999528248838289 9976 chr7 44047352 44047352 1 + C T rs561958349 44047341 - 44047321 44047361 41 AAGGCGAGCGCGATCTCGCGCCCACACCCAGTGCTCTGGGT AAGGCGAGCACGATCTCGCGCCCACACCCAGTGCTCTGGGT < 41bp 1 0.0376764460837037 1 0.0491338670253754 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDYE1 ENSG00000136206 CDS Human protein_coding chr7:44047341 chr7:44047352 synonymous SNV . 0 10 hm5C_associated_SNPs_7271 0 0 0 0 0 exosome 1 0.500231643921176 1 0.999536712157648 hm5C_site_9976 DeepMRMD:1;iRNA_m5C:0.999536712157648 9977 chr7 44047352 44047352 1 + C T rs561958349 44047343 - 44047323 44047363 41 GAAAGGCGAGCGCGATCTCGCGCCCACACCCAGTGCTCTGG GAAAGGCGAGCACGATCTCGCGCCCACACCCAGTGCTCTGG < 41bp 1 0.277474503778753 1 0.241465657949448 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDYE1 ENSG00000136206 CDS Human protein_coding chr7:44047343 chr7:44047352 synonymous SNV . 0 12 hm5C_associated_SNPs_7272 0 0 0 0 0 exosome 1 0.500231643920861 1 0.999536712158279 hm5C_site_9977 DeepMRMD:1;iRNA_m5C:0.999536712158279 9978 chr7 44084292 44084292 1 + C G rs4430012 44084287 + 44084267 44084307 41 CGGCTGTCAAAGGGGCGGCCCGGCCCGGCCCGGAAGCTACA CGGCTGTCAAAGGGGCGGCCCGGCCGGGCCCGGAAGCTACA < 41bp 1 0.473785969033886 1 0.181610435247421 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 UTR5 Human protein_coding chr7:44084287 chr7:44084292 . . 0 26 hm5C_associated_SNPs_7273 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9978 DeepMRMD:1;iRNA_m5C:0.999536712157815 9979 chr7 44084298 44084298 1 + G A rs550474673 44084287 + 44084267 44084307 41 CGGCTGTCAAAGGGGCGGCCCGGCCCGGCCCGGAAGCTACA CGGCTGTCAAAGGGGCGGCCCGGCCCGGCCCAGAAGCTACA < 41bp 1 0.413961370805149 1 0.106336414813995 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 UTR5 Human protein_coding chr7:44084287 chr7:44084298 . . 0 32 hm5C_associated_SNPs_7274 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9979 DeepMRMD:1;iRNA_m5C:0.999536712157815 9980 chr7 44084298 44084298 1 + G A rs550474673 44084291 + 44084271 44084311 41 TGTCAAAGGGGCGGCCCGGCCCGGCCCGGAAGCTACAGCAG TGTCAAAGGGGCGGCCCGGCCCGGCCCAGAAGCTACAGCAG < 41bp 1 0.581581170974222 1 0.599841773509979 experiment 0.836837658051556 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DBNL ENSG00000136279 UTR5 Human protein_coding chr7:44084291 chr7:44084298 . . 0 28 hm5C_associated_SNPs_7275 0 0 1 0 0 Ribosome 1 0.500231643924562 0.800316452980042 0.999536712150876 hm5C_site_9980 DeepMRMD:0.800316452980042;iRNA_m5C:0.999536712150876 9981 chr7 44084298 44084298 1 + G A rs550474673 44084292 + 44084272 44084312 41 GTCAAAGGGGCGGCCCGGCCCGGCCCGGAAGCTACAGCAGC GTCAAAGGGGCGGCCCGGCCCGGCCCAGAAGCTACAGCAGC < 41bp 1 0.567991971529266 1 0.242282927036285 experiment 0.864016056941467 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DBNL ENSG00000136279 UTR5 Human protein_coding chr7:44084292 chr7:44084298 . . 0 27 hm5C_associated_SNPs_7276 0 0 1 0 0 Ribosome 1 0.500231727832243 1 0.999536544335514 hm5C_site_9981 DeepMRMD:1;iRNA_m5C:0.999536544335514 9982 chr7 44096482 44096482 1 + G A rs61735009 44096481 + 44096461 44096501 41 GAGAGTGGCCGCTTCCAGGACGTGGGACCCCAGGCCCCAGT GAGAGTGGCCGCTTCCAGGACATGGGACCCCAGGCCCCAGT < 41bp 1 0.658489284635936 1 0.315038979053497 experiment 0.683021430728128 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44096481 chr7:44096482 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_7277 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9982 DeepMRMD:1;iRNA_m5C:0.999536712157815 9983 chr7 44747903 44747903 1 + T C rs14239 44747904 + 44747884 44747924 41 GGGTCAGCTCTGGCCACAATCCTCCCCACCAGTCTCACCCA GGGTCAGCTCTGGCCACAACCCTCCCCACCAGTCTCACCCA < 41bp 1 0.143308727177812 1 0.44381245970726 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control OGDH ENSG00000105953 UTR3 Human protein_coding chr7:44747904 chr7:44747903 . . 0 20 hm5C_associated_SNPs_7281 0 0 1 0 0 Nucleus 1 0.500231596627799 1 0.999536806744402 hm5C_site_9983 DeepMRMD:1;iRNA_m5C:0.999536806744402 9984 chr7 44747903 44747903 1 + T C rs14239 44747905 + 44747885 44747925 41 GGTCAGCTCTGGCCACAATCCTCCCCACCAGTCTCACCCAC GGTCAGCTCTGGCCACAACCCTCCCCACCAGTCTCACCCAC < 41bp 1 0.635192517538401 1 0.712713122367859 experiment 0.729614964923198 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control OGDH ENSG00000105953 UTR3 Human protein_coding chr7:44747905 chr7:44747903 . . 0 19 hm5C_associated_SNPs_7282 0 0 1 0 0 Nucleus 1 0.500231643912976 0.574573755264282 0.999536712174047 hm5C_site_9984 DeepMRMD:0.574573755264282;iRNA_m5C:0.999536712174047 9985 chr7 44747903 44747903 1 + T C rs14239 44747907 + 44747887 44747927 41 TCAGCTCTGGCCACAATCCTCCCCACCAGTCTCACCCACTA TCAGCTCTGGCCACAACCCTCCCCACCAGTCTCACCCACTA < 41bp 1 0.581069978021344 1 0.266445189714432 experiment 0.837860043957312 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control OGDH ENSG00000105953 UTR3 Human protein_coding chr7:44747907 chr7:44747903 . . 0 17 hm5C_associated_SNPs_7283 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_9985 DeepMRMD:1;iRNA_m5C:0.999536712157815 9986 chr7 44747903 44747903 1 + T C rs14239 44747908 + 44747888 44747928 41 CAGCTCTGGCCACAATCCTCCCCACCAGTCTCACCCACTAG CAGCTCTGGCCACAACCCTCCCCACCAGTCTCACCCACTAG < 41bp 1 0.0589618032103866 1 0.120081901550293 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control OGDH ENSG00000105953 UTR3 Human protein_coding chr7:44747908 chr7:44747903 . . 0 16 hm5C_associated_SNPs_7284 0 0 1 0 0 Nucleus 1 0.500231619838326 1 0.999536760323348 hm5C_site_9986 DeepMRMD:1;iRNA_m5C:0.999536760323348 9987 chr7 44747903 44747903 1 + T C rs14239 44747909 + 44747889 44747929 41 AGCTCTGGCCACAATCCTCCCCACCAGTCTCACCCACTAGG AGCTCTGGCCACAACCCTCCCCACCAGTCTCACCCACTAGG < 41bp 1 0.0797058523186361 1 0.0964924991130829 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control OGDH ENSG00000105953 UTR3 Human protein_coding chr7:44747909 chr7:44747903 . . 0 15 hm5C_associated_SNPs_7285 0 0 1 0 0 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_9987 DeepMRMD:1;iRNA_m5C:0.999536712157812 9988 chr7 44802545 44802545 1 + C G rs77553241 44802539 + 44802519 44802559 41 GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT GTCCGCTCGGTGCTGCAGGGCCTCCTGAAAAAGCGCCTCCT < 41bp 1 0.03668019950024 1 0.0322462618350983 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802539 chr7:44802545 synonymous SNV . 0 27 hm5C_associated_SNPs_7286 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9988 DeepMRMD:1;iRNA_m5C:0.999536712157815 9989 chr7 44806159 44806159 1 + C T rs199842392 44806140 + 44806120 44806160 41 CAAACCCTCCCCCAGCGTCCCGGCAGTCCTTGGGCCAAGCG CAAACCCTCCCCCAGCGTCCCGGCAGTCCTTGGGCCAAGTG < 41bp 1 0.651659800763178 1 0.322388708591461 experiment 0.696680398473644 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806140 chr7:44806159 nonsynonymous SNV 0.134 0 40 hm5C_associated_SNPs_7287 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_9989 DeepMRMD:1;iRNA_m5C:0.999536712157815 9990 chr7 44836305 44836305 1 + A G rs373612022 44836315 + 44836295 44836335 41 CCGCCGAGGAAAACCGTGTACTATTAGCCATGGTCAACCCC CCGCCGAGGAGAACCGTGTACTATTAGCCATGGTCAACCCC < 41bp 1 0.312295094356041 1 0.0230961740016937 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIA ENSG00000196262 UTR5 Human protein_coding chr7:44836315 chr7:44836305 . . 0 11 hm5C_associated_SNPs_7288 0 0 1 0 1 Ribosome 1 0.500231643920253 1 0.999536712159495 hm5C_site_9990 DeepMRMD:1;iRNA_m5C:0.999536712159495 9991 chr7 44836314 44836314 1 + A G rs6850 44836315 + 44836295 44836335 41 CCGCCGAGGAAAACCGTGTACTATTAGCCATGGTCAACCCC CCGCCGAGGAAAACCGTGTGCTATTAGCCATGGTCAACCCC < 41bp 1 0.276920590851526 1 0.0236002802848816 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIA ENSG00000196262 UTR5 Human protein_coding chr7:44836315 chr7:44836314 . . 0 20 hm5C_associated_SNPs_7289 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_9991 DeepMRMD:1;iRNA_m5C:0.999536712157815 9992 chr7 45755013 45755013 1 + G T rs56138316 45755028 + 45755008 45755048 41 AGCCAGCAGGGTTGGGGGTCCGCCTCCTCACTGCTCCTCAA AGCCATCAGGGTTGGGGGTCCGCCTCCTCACTGCTCCTCAA < 41bp 1 0.358525268088177 1 0.487986713647842 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 UTR3 Human protein_coding chr7:45755028 chr7:45755013 . . 0 6 hm5C_associated_SNPs_7290 0 0 1 0 0 Nucleus 1 0.500231643921094 1 0.999536712157813 hm5C_site_9992 DeepMRMD:1;iRNA_m5C:0.999536712157813 9993 chr7 45759893 45759893 1 + T C rs1132637 45759907 + 45759887 45759927 41 ATCCATTGAGGTCAGGAGCTCAAGACCAGCCTGGTCAACAT ATCCATCGAGGTCAGGAGCTCAAGACCAGCCTGGTCAACAT < 41bp 1 0.696631721068789 1 0.786577939987183 experiment 0.606736557862422 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 UTR3 Human protein_coding chr7:45759907 chr7:45759893 . . 0 7 hm5C_associated_SNPs_7291 0 0 0 0 0 Nucleus 1 0.500231733486932 0.426844120025634 0.999536533026137 hm5C_site_9993 DeepMRMD:0.426844120025634;iRNA_m5C:0.999536533026137 9994 chr7 48128901 48128901 1 + T C rs3763504 48128886 + 48128866 48128906 41 GAGTGCTCCGGCGCACAGACCCGCGCCCCGCCGTCTGCGAG GAGTGCTCCGGCGCACAGACCCGCGCCCCGCCGTCCGCGAG < 41bp 1 0.560013578162555 1 0.19379460811615 experiment 0.879972843674889 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UPP1 ENSG00000183696 UTR5 Human protein_coding chr7:48128886 chr7:48128901 . . 0 36 hm5C_associated_SNPs_7292 0 0 0 0 0 Ribosome 1 0.500231792484608 1 0.999536415030784 hm5C_site_9994 DeepMRMD:1;iRNA_m5C:0.999536415030784 9995 chr7 55259429 55259429 1 + G A rs41420046 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAAGACCGTCGCTTGGTGCACCGCGA < 41bp 1 0.117724082938203 1 0.267926454544067 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259429 synonymous SNV . 0 18 hm5C_associated_SNPs_7293 1 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_9995 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 9996 chr7 55259450 55259450 1 + C A rs2229066 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGAGA < 41bp 1 0.0610788395885902 1 0.230445683002472 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259450 synonymous SNV . 0 39 hm5C_associated_SNPs_7294 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_9996 DeepMRMD:1;iRNA_m5C:0.999536712157815 9997 chr7 55273868 55273868 1 + G A rs572674550 55273862 + 55273842 55273882 41 CCTTCATGGCCCCAGCAGGCCGGATCGGTACTGTATCAAGT CCTTCATGGCCCCAGCAGGCCGGATCAGTACTGTATCAAGT < 41bp 1 0.303178049089532 1 0.190010845661163 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EGFR ENSG00000146648 UTR3 Human protein_coding chr7:55273862 chr7:55273868 . . 0 27 hm5C_associated_SNPs_7295 1 0 1 0 0 Nucleus 1 0.500231643830243 1 0.999536712339515 hm5C_site_9997 DeepMRMD:1;iRNA_m5C:0.999536712339515 Lung cancer Lung cancer 9998 chr7 55273874 55273874 1 + G A rs192601649 55273862 + 55273842 55273882 41 CCTTCATGGCCCCAGCAGGCCGGATCGGTACTGTATCAAGT CCTTCATGGCCCCAGCAGGCCGGATCGGTACTATATCAAGT < 41bp 1 0.282633007056849 1 0.197164088487625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EGFR ENSG00000146648 UTR3 Human protein_coding chr7:55273862 chr7:55273874 . . 0 33 hm5C_associated_SNPs_7296 0 0 0 0 0 Nucleus 1 0.500231643939216 1 0.999536712121568 hm5C_site_9998 DeepMRMD:1;iRNA_m5C:0.999536712121568 9999 chr7 55459563 55459563 1 + A G rs2049497 55459578 + 55459558 55459598 41 AAGACAGCTGATCCCCATGACTGCTCTGCTTATACTGGCTG AAGACGGCTGATCCCCATGACTGCTCTGCTTATACTGGCTG < 41bp 1 0.336272425840761 1 0.0496212244033813 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55459578 chr7:55459563 synonymous SNV . 0 6 hm5C_associated_SNPs_7297 0 0 1 0 2 Ribosome 1 0.500231643946708 1 0.999536712106583 hm5C_site_9999 DeepMRMD:1;iRNA_m5C:0.999536712106583 10000 chr7 56067641 56067641 1 + A G rs1802100 56067640 + 56067620 56067660 41 CATGTTGAGATTTAAATTGGCATAAAGCTGCATACTTTTTG CATGTTGAGATTTAAATTGGCGTAAAGCTGCATACTTTTTG < 41bp 1 0.436328451583813 1 0.0660594701766968 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIPSNAP2 ENSG00000146729 UTR3 Human protein_coding chr7:56067640 chr7:56067641 . . 0 22 hm5C_associated_SNPs_7299 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_10000 DeepMRMD:1;iRNA_m5C:0.999536712157815 10001 chr7 56129511 56129511 1 + A G rs4927 56129510 + 56129490 56129530 41 TCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGG TCAAGCAGAACATTCAGAATCGGGTCAGCTTGTGGGTGTGG < 41bp 1 0.635602970000093 1 0.27081835269928 experiment 0.728794059999815 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56129510 chr7:56129511 synonymous SNV . 0 22 hm5C_associated_SNPs_7300 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_10001 DeepMRMD:1;iRNA_m5C:0.999536712157815 10002 chr7 56136270 56136270 1 + C T rs150976522 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCAGAGATGGTGACGGGCCTGTGTGGGAGGCGAC < 41bp 1 0.551462168012226 1 0.62284117937088 experiment 0.897075663975548 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136270 nonsynonymous SNV 0.718 4 31 hm5C_associated_SNPs_7301 0 0 1 0 2 Ribosome 1 0.500231983468462 0.75431764125824 0.999536033063076 hm5C_site_10002 DeepMRMD:0.75431764125824;iRNA_m5C:0.999536033063076 10003 chr7 64383794 64383794 1 + C T rs116865469 64383811 + 64383791 64383831 41 TTACTGCAACCTCTGCCCCTCGGGATTCAAGTGATTCTACT TTATTGCAACCTCTGCCCCTCGGGATTCAAGTGATTCTACT < 41bp 1 0.647008739051287 1 0.828400611877441 experiment 0.705982521897427 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF273 ENSG00000198039 UTR3 Human protein_coding chr7:64383811 chr7:64383794 . . 0 4 hm5C_associated_SNPs_7302 0 0 1 0 1 Cytosol 1 0.500231643682079 0.343198776245118 0.999536712635843 hm5C_site_10003 DeepMRMD:0.343198776245118;iRNA_m5C:0.999536712635843 10004 chr7 64531396 64531396 1 + T C rs571007451 64531408 + 64531388 64531428 41 GCATTTGCTGATGCGTTGCTCGTTATTCCCAAGGTGTGTAT GCATTTGCCGATGCGTTGCTCGTTATTCCCAAGGTGTGTAT < 41bp 1 0.442786586016807 1 0.064691960811615 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCT6P3 ENSG00000234585 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64531408 chr7:64531396 . . 0 9 hm5C_associated_SNPs_7303 0 0 1 0 1 unknown 1 0.498945549900484 1 1 hm5C_site_10004 DeepMRMD:1;iRNA_m5C:1 10005 chr7 64531401 64531401 1 + C A rs184482762 64531408 + 64531388 64531428 41 GCATTTGCTGATGCGTTGCTCGTTATTCCCAAGGTGTGTAT GCATTTGCTGATGAGTTGCTCGTTATTCCCAAGGTGTGTAT < 41bp 1 0.418818049309363 1 0.0737591981887817 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCT6P3 ENSG00000234585 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64531408 chr7:64531401 . . 0 14 hm5C_associated_SNPs_7304 0 0 1 0 1 unknown 1 0.500209375381819 1 0.999581249236362 hm5C_site_10005 DeepMRMD:1;iRNA_m5C:0.999581249236362 10006 chr7 65617595 65617595 1 + T C rs875971 65617613 + 65617593 65617633 41 TGTGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGT TGCGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGT < 41bp 1 0.517671983058386 1 0.647464156150818 experiment 0.964656033883227 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65617613 chr7:65617595 . . 0 3 hm5C_associated_SNPs_7305 0 1 1 1 0 Ribosome 1 0.500231643921092 0.705071687698364 0.999536712157815 hm5C_site_10006 DeepMRMD:0.705071687698364;iRNA_m5C:0.999536712157815 10007 chr7 65619232 65619232 1 + T C rs117490174 65619234 + 65619214 65619254 41 GTGCAGTGGCACGATCTCTGCTCACTGCAACCTCTGCCTCC GTGCAGTGGCACGATCTCCGCTCACTGCAACCTCTGCCTCC < 41bp 1 0.378881646586111 1 0.0305748283863068 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65619234 chr7:65619232 . . 0 19 hm5C_associated_SNPs_7306 0 0 1 0 0 Ribosome 1 0.500232061277386 1 0.999535877445229 hm5C_site_10007 DeepMRMD:1;iRNA_m5C:0.999535877445229 10008 chr7 65619232 65619232 1 + T C rs117490174 65619236 + 65619216 65619256 41 GCAGTGGCACGATCTCTGCTCACTGCAACCTCTGCCTCCCA GCAGTGGCACGATCTCCGCTCACTGCAACCTCTGCCTCCCA < 41bp 1 0.362180192499414 1 0.0286381244659424 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65619236 chr7:65619232 . . 0 17 hm5C_associated_SNPs_7307 0 0 1 0 0 Ribosome 1 0.500238400510783 1 0.999523198978435 hm5C_site_10008 DeepMRMD:1;iRNA_m5C:0.999523198978435 10009 chr7 65619232 65619232 1 + T C rs117490174 65619241 + 65619221 65619261 41 GGCACGATCTCTGCTCACTGCAACCTCTGCCTCCCAGATTC GGCACGATCTCCGCTCACTGCAACCTCTGCCTCCCAGATTC < 41bp 1 0.384606932160043 1 0.257678896188736 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65619241 chr7:65619232 . . 0 12 hm5C_associated_SNPs_7308 0 0 1 0 0 Ribosome 1 0.500231643921128 1 0.999536712157744 hm5C_site_10009 DeepMRMD:1;iRNA_m5C:0.999536712157744 10010 chr7 65619232 65619232 1 + T C rs117490174 65619244 + 65619224 65619264 41 ACGATCTCTGCTCACTGCAACCTCTGCCTCCCAGATTCAAG ACGATCTCCGCTCACTGCAACCTCTGCCTCCCAGATTCAAG < 41bp 1 0.0482712288080039 1 0.0468804240226746 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65619244 chr7:65619232 . . 0 9 hm5C_associated_SNPs_7309 0 0 1 0 0 Ribosome 1 0.500231965529384 1 0.999536068941232 hm5C_site_10010 DeepMRMD:1;iRNA_m5C:0.999536068941232 10011 chr7 65619232 65619232 1 + T C rs117490174 65619245 + 65619225 65619265 41 CGATCTCTGCTCACTGCAACCTCTGCCTCCCAGATTCAAGC CGATCTCCGCTCACTGCAACCTCTGCCTCCCAGATTCAAGC < 41bp 1 0.268705295637754 1 0.114181399345398 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65619245 chr7:65619232 . . 0 8 hm5C_associated_SNPs_7310 0 0 1 0 0 Ribosome 1 0.500231641907352 1 0.999536716185296 hm5C_site_10011 DeepMRMD:1;iRNA_m5C:0.999536716185296 10012 chr7 65619232 65619232 1 + T C rs117490174 65619247 + 65619227 65619267 41 ATCTCTGCTCACTGCAACCTCTGCCTCCCAGATTCAAGCGA ATCTCCGCTCACTGCAACCTCTGCCTCCCAGATTCAAGCGA < 41bp 1 0.477318073855021 1 0.0683583319187164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65619247 chr7:65619232 . . 0 6 hm5C_associated_SNPs_7311 0 0 1 0 0 Ribosome 1 0.500231667512582 1 0.999536664974836 hm5C_site_10012 DeepMRMD:1;iRNA_m5C:0.999536664974836 10013 chr7 65619232 65619232 1 + T C rs117490174 65619250 + 65619230 65619270 41 TCTGCTCACTGCAACCTCTGCCTCCCAGATTCAAGCGATTC TCCGCTCACTGCAACCTCTGCCTCCCAGATTCAAGCGATTC < 41bp 1 0.0338574493207589 1 0.0237378478050232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65619250 chr7:65619232 . . 0 3 hm5C_associated_SNPs_7312 0 0 1 0 0 Ribosome 1 0.50023164460484 1 0.999536710790319 hm5C_site_10013 DeepMRMD:1;iRNA_m5C:0.999536710790319 10014 chr7 65619232 65619232 1 + T C rs117490174 65619251 + 65619231 65619271 41 CTGCTCACTGCAACCTCTGCCTCCCAGATTCAAGCGATTCT CCGCTCACTGCAACCTCTGCCTCCCAGATTCAAGCGATTCT < 41bp 1 0.245526226861486 1 0.234632879495621 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65619251 chr7:65619232 . . 0 2 hm5C_associated_SNPs_7313 0 0 1 0 0 Ribosome 1 0.500231643931837 1 0.999536712136326 hm5C_site_10014 DeepMRMD:1;iRNA_m5C:0.999536712136326 10015 chr7 65619290 65619290 1 + G A rs187467471 65619276 + 65619256 65619296 41 AGATTCAAGCGATTCTGGTGCCTTAGCCTCCTGAGTAGCTG AGATTCAAGCGATTCTGGTGCCTTAGCCTCCTGAATAGCTG < 41bp 1 0.112826492716396 1 0.0489128232002258 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65619276 chr7:65619290 . . 0 35 hm5C_associated_SNPs_7314 0 0 1 0 0 Ribosome 1 0.500231643921546 1 0.999536712156908 hm5C_site_10015 DeepMRMD:1;iRNA_m5C:0.999536712156908 10016 chr7 65619290 65619290 1 + G A rs187467471 65619277 + 65619257 65619297 41 GATTCAAGCGATTCTGGTGCCTTAGCCTCCTGAGTAGCTGG GATTCAAGCGATTCTGGTGCCTTAGCCTCCTGAATAGCTGG < 41bp 1 0.30952497600613 1 0.113208204507828 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65619277 chr7:65619290 . . 0 34 hm5C_associated_SNPs_7315 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10016 DeepMRMD:1;iRNA_m5C:0.999536712157815 10017 chr7 65619290 65619290 1 + G A rs187467471 65619282 + 65619262 65619302 41 AAGCGATTCTGGTGCCTTAGCCTCCTGAGTAGCTGGGACTT AAGCGATTCTGGTGCCTTAGCCTCCTGAATAGCTGGGACTT < 41bp 1 0.107701599898098 1 0.426882296800613 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65619282 chr7:65619290 . . 0 29 hm5C_associated_SNPs_7316 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10017 DeepMRMD:1;iRNA_m5C:0.999536712157815 10018 chr7 65619290 65619290 1 + G A rs187467471 65619283 + 65619263 65619303 41 AGCGATTCTGGTGCCTTAGCCTCCTGAGTAGCTGGGACTTA AGCGATTCTGGTGCCTTAGCCTCCTGAATAGCTGGGACTTA < 41bp 1 0.46195756478394 1 0.682980835437775 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65619283 chr7:65619290 . . 0 28 hm5C_associated_SNPs_7317 0 0 1 0 0 Ribosome 1 0.500231643898743 0.63403832912445 0.999536712202514 hm5C_site_10018 DeepMRMD:0.63403832912445;iRNA_m5C:0.999536712202514 10019 chr7 65619290 65619290 1 + G A rs187467471 65619285 + 65619265 65619305 41 CGATTCTGGTGCCTTAGCCTCCTGAGTAGCTGGGACTTACA CGATTCTGGTGCCTTAGCCTCCTGAATAGCTGGGACTTACA < 41bp 1 0.324786960230852 1 0.357509255409241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CRCP ENSG00000234185 ncRNA_intronic Human antisense chr7:65619285 chr7:65619290 . . 0 26 hm5C_associated_SNPs_7318 0 0 1 0 0 Ribosome 1 0.500231644182927 1 0.999536711634146 hm5C_site_10019 DeepMRMD:1;iRNA_m5C:0.999536711634146 10020 chr7 66105838 66105838 1 + A G rs115778754 66105853 + 66105833 66105873 41 AATAAATAAATTGGGGAGGACAGCCTCACTGGTATCAGACT AATAAGTAAATTGGGGAGGACAGCCTCACTGGTATCAGACT < 41bp 1 0.256660943760049 1 0.233879178762436 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD7 ENSG00000243335 UTR3 Human protein_coding chr7:66105853 chr7:66105838 . . 0 6 hm5C_associated_SNPs_7321 1 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10020 DeepMRMD:1;iRNA_m5C:0.999536712157815 Progressive myoclonic epilepsy Progressive myoclonic epilepsy 10021 chr7 66703599 66703599 1 + A G rs373522572 66703583 + 66703563 66703603 41 CAAAAGGTTCTTGAACACCACTGTGATTCTCCAAGGACGAA CAAAAGGTTCTTGAACACCACTGTGATTCTCCAAGGGCGAA < 41bp 1 0.308460364124015 1 0.0346682965755463 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TYW1 ENSG00000198874 UTR3 Human protein_coding chr7:66703583 chr7:66703599 . . 0 37 hm5C_associated_SNPs_7322 0 0 0 0 0 Endoplasmic reticulum 1 0.500225236222695 1 0.99954952755461 hm5C_site_10021 DeepMRMD:1;iRNA_m5C:0.99954952755461 10022 chr7 69064650 69064650 1 + C T rs200189077 69064669 + 69064649 69064689 41 CCGACGCGGGGCCATGGACTCCGCAAAAAGCGGCGGTCGCG CTGACGCGGGGCCATGGACTCCGCAAAAAGCGGCGGTCGCG < 41bp 1 0.603973342060309 1 0.353708922863007 experiment 0.792053315879383 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064669 chr7:69064650 nonsynonymous SNV 0.995 4 2 hm5C_associated_SNPs_7323 0 0 1 0 0 Nucleus 1 0.500231644990054 1 0.999536710019892 hm5C_site_10022 DeepMRMD:1;iRNA_m5C:0.999536710019892 10023 chr7 69064650 69064650 1 + C T rs200189077 69064670 + 69064650 69064690 41 CGACGCGGGGCCATGGACTCCGCAAAAAGCGGCGGTCGCGG TGACGCGGGGCCATGGACTCCGCAAAAAGCGGCGGTCGCGG < 41bp 1 0.564224596118853 1 0.718036890029907 experiment 0.871550807762294 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064670 chr7:69064650 nonsynonymous SNV 0.995 4 1 hm5C_associated_SNPs_7324 0 0 1 0 0 Nucleus 1 0.500231646602039 0.563926219940186 0.999536706795923 hm5C_site_10023 DeepMRMD:0.563926219940186;iRNA_m5C:0.999536706795923 10024 chr7 69583191 69583191 1 + G A rs575812317 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTCCACCAGAGCAGCTCTCGGGA < 41bp 1 0.0930339904781324 1 0.0841521918773651 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583191 nonsynonymous SNV 0.993 3 26 hm5C_associated_SNPs_7325 0 0 0 0 2 Nucleus 1 0.500231683653033 1 0.999536632693933 hm5C_site_10024 DeepMRMD:1;iRNA_m5C:0.999536632693933 10025 chr7 72409197 72409197 1 + G A rs112174498 72409185 + 72409165 72409205 41 TCTAGCCCAGCCTCCTCCCGCTCCCAGACACCGGAGAGGCC TCTAGCCCAGCCTCCTCCCGCTCCCAGACACCAGAGAGGCC < 41bp 1 0.0960212111275914 1 0.291948795318604 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72409185 chr7:72409197 synonymous SNV . 0 33 hm5C_associated_SNPs_7326 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10025 DeepMRMD:1;iRNA_m5C:0.999536712157815 10026 chr7 72419836 72419836 1 + C G rs200449002 72419817 + 72419797 72419837 41 GTCTAAGCTGCTGTGGACCTCTGAGTCCCTCAGCCACGCCT GTCTAAGCTGCTGTGGACCTCTGAGTCCCTCAGCCACGCGT < 41bp 1 0.552486965441769 1 0.406925052404404 experiment 0.895026069116462 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSUN5P2 ENSG00000106133 ncRNA_intronic Human transcribed_unprocessed_pseudogene chr7:72419817 chr7:72419836 . . 0 40 hm5C_associated_SNPs_7328 0 0 1 0 0 unknown 1 0.500231643921685 1 0.999536712156629 hm5C_site_10026 DeepMRMD:1;iRNA_m5C:0.999536712156629 10027 chr7 73536478 73536478 1 + C T rs573967711 73536461 + 73536441 73536481 41 CTCAGCCCCTGCAGTCATCTCAGAGCCCCTTCCCGGGCCTC CTCAGCCCCTGCAGTCATCTCAGAGCCCCTTCCCGGGTCTC < 41bp 1 0.547170099278433 1 0.880949795246124 experiment 0.905659801443133 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control LIMK1 ENSG00000106683 UTR3 Human protein_coding chr7:73536461 chr7:73536478 . . 0 38 hm5C_associated_SNPs_7329 0 0 1 0 0 Ribosome 1 0.500231643921092 0.238100409507752 0.999536712157815 hm5C_site_10027 DeepMRMD:0.238100409507752;iRNA_m5C:0.999536712157815 10028 chr7 73610978 73610978 1 + G A rs556167786 73610973 + 73610953 73610993 41 GCAGGAGCCTGGGAAAGAGGCCCTCGCCAGGTGATGGCAGG GCAGGAGCCTGGGAAAGAGGCCCTCACCAGGTGATGGCAGG < 41bp 1 0.332056162847811 1 0.0782539248466492 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4H ENSG00000106682 UTR3 Human protein_coding chr7:73610973 chr7:73610978 . . 0 26 hm5C_associated_SNPs_7330 0 0 0 0 0 Ribosome 1 0.500231642873578 1 0.999536714252845 hm5C_site_10028 DeepMRMD:1;iRNA_m5C:0.999536714252845 10029 chr7 73610978 73610978 1 + G A rs556167786 73610974 + 73610954 73610994 41 CAGGAGCCTGGGAAAGAGGCCCTCGCCAGGTGATGGCAGGG CAGGAGCCTGGGAAAGAGGCCCTCACCAGGTGATGGCAGGG < 41bp 1 0.451532984651184 1 0.125113874673843 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4H ENSG00000106682 UTR3 Human protein_coding chr7:73610974 chr7:73610978 . . 0 25 hm5C_associated_SNPs_7331 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10029 DeepMRMD:1;iRNA_m5C:0.999536712157815 10030 chr7 73610978 73610978 1 + G A rs556167786 73610975 + 73610955 73610995 41 AGGAGCCTGGGAAAGAGGCCCTCGCCAGGTGATGGCAGGGC AGGAGCCTGGGAAAGAGGCCCTCACCAGGTGATGGCAGGGC < 41bp 1 0.576805197967743 1 0.111232697963715 experiment 0.846389604064513 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4H ENSG00000106682 UTR3 Human protein_coding chr7:73610975 chr7:73610978 . . 0 24 hm5C_associated_SNPs_7332 0 0 0 0 0 Ribosome 1 0.500231643295883 1 0.999536713408234 hm5C_site_10030 DeepMRMD:1;iRNA_m5C:0.999536713408234 10031 chr7 73611274 73611274 1 + C T rs183678176 73611267 + 73611247 73611287 41 AATGTGGATAAGATAAAGAACAAAACACATGCATCTAAACT AATGTGGATAAGATAAAGAACAAAACATATGCATCTAAACT < 41bp 1 0.608750313654909 1 0.132264047861099 experiment 0.782499372690182 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 UTR3 Human protein_coding chr7:73611267 chr7:73611274 . . 0 28 hm5C_associated_SNPs_7333 0 0 0 0 0 Ribosome 1 0.500244082004608 1 0.999511835990783 hm5C_site_10031 DeepMRMD:1;iRNA_m5C:0.999511835990783 10032 chr7 73611274 73611274 1 + C T rs183678176 73611294 + 73611274 73611314 41 CATGCATCTAAACTGCTGGGCAATCCAGTTGACTTTTAAAT TATGCATCTAAACTGCTGGGCAATCCAGTTGACTTTTAAAT < 41bp 1 0.116244037203521 1 0.0978347659111023 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4H ENSG00000106682 UTR3 Human protein_coding chr7:73611294 chr7:73611274 . . 0 1 hm5C_associated_SNPs_7334 0 0 0 0 0 Ribosome 1 0.500231643925433 1 0.999536712149135 hm5C_site_10032 DeepMRMD:1;iRNA_m5C:0.999536712149135 10033 chr7 73636018 73636018 1 + A G rs11544217 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCGGAA < 41bp 1 0.199237995307661 1 0.239814579486847 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636018 synonymous SNV . 0 38 hm5C_associated_SNPs_7335 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_10033 DeepMRMD:1;iRNA_m5C:0.999536712157815 10034 chr7 73636018 73636018 1 + A G rs11544217 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAG < 41bp 1 0.175591553971188 1 0.178747236728668 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636018 synonymous SNV . 0 26 hm5C_associated_SNPs_7336 0 0 0 0 2 chromatin 1 0.500231643921088 1 0.999536712157825 hm5C_site_10034 DeepMRMD:1;iRNA_m5C:0.999536712157825 10035 chr7 73636018 73636018 1 + A G rs11544217 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAGG < 41bp 1 0.327088553366364 1 0.337703019380569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636018 synonymous SNV . 0 25 hm5C_associated_SNPs_7337 0 0 0 0 2 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_10035 DeepMRMD:1;iRNA_m5C:0.999536712157814 10036 chr7 73636018 73636018 1 + A G rs11544217 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAGGA < 41bp 1 0.454750989810835 1 0.423249185085297 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636018 synonymous SNV . 0 24 hm5C_associated_SNPs_7338 0 0 0 0 2 chromatin 1 0.500231643921061 1 0.999536712157878 hm5C_site_10036 DeepMRMD:1;iRNA_m5C:0.999536712157878 10037 chr7 73636018 73636018 1 + A G rs11544217 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAGGAC < 41bp 1 0.641346370990299 1 0.758642792701721 experiment 0.717307258019402 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636018 synonymous SNV . 0 23 hm5C_associated_SNPs_7339 0 0 0 0 2 chromatin 1 0.500231643931914 0.482714414596558 0.999536712136173 hm5C_site_10037 DeepMRMD:0.482714414596558;iRNA_m5C:0.999536712136173 10038 chr7 73636018 73636018 1 + A G rs11544217 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGCGGTTCTCGAAGCCCCCGGAAGGTGAGGCGAAGGACA < 41bp 1 0.690306643424635 1 0.887604832649231 experiment 0.619386713150731 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636018 synonymous SNV . 0 22 hm5C_associated_SNPs_7340 0 0 0 0 2 chromatin 1 0.500231643921106 0.224790334701538 0.999536712157788 hm5C_site_10038 DeepMRMD:0.224790334701538;iRNA_m5C:0.999536712157788 10039 chr7 73731906 73731906 1 + C T rs148561130 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCCCTGGCCGTGGGGGGAAGCA < 41bp 1 0.125195028577764 1 0.0798062086105347 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731906 synonymous SNV . 0 24 hm5C_associated_SNPs_7341 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10039 DeepMRMD:1;iRNA_m5C:0.999536712157815 10040 chr7 73731906 73731906 1 + C T rs148561130 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCCCTGGCCGTGGGGGGAAGCAC < 41bp 1 0.194045156533928 1 0.0680532455444336 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731906 synonymous SNV . 0 23 hm5C_associated_SNPs_7342 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10040 DeepMRMD:1;iRNA_m5C:0.999536712157815 10041 chr7 73731906 73731906 1 + C T rs148561130 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCCCTGGCCGTGGGGGGAAGCACT < 41bp 1 0.365983946581174 1 0.099048912525177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731906 synonymous SNV . 0 22 hm5C_associated_SNPs_7343 0 0 0 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_10041 DeepMRMD:1;iRNA_m5C:0.999536712157815 10042 chr7 73818525 73818525 1 + C T rs534318940 73818517 + 73818497 73818537 41 GAAGGAGCTGCCCTGAGGACCATCTTAGCGGCCCTGTCCTC GAAGGAGCTGCCCTGAGGACCATCTTAGTGGCCCTGTCCTC < 41bp 1 0.112974568044433 1 0.0727452039718628 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLIP2 ENSG00000106665 UTR3 Human protein_coding chr7:73818517 chr7:73818525 . . 0 29 hm5C_associated_SNPs_7344 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_10042 DeepMRMD:1;iRNA_m5C:0.999536712157816 10043 chr7 73969541 73969541 1 + A G rs2301895 73969540 + 73969520 73969560 41 GAGGGAGTCAAAGAGCCCATCATGGATAGTCAAGGTACCCA GAGGGAGTCAAAGAGCCCATCGTGGATAGTCAAGGTACCCA < 41bp 1 0.456456612091031 1 0.309753596782684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969540 chr7:73969541 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_7345 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10043 DeepMRMD:1;iRNA_m5C:0.999536712157815 10044 chr7 75034255 75034255 1 + T C rs147290058 75034246 + 75034226 75034266 41 CACCCGTGGCCTGGTGGCCTCCCTGGACATGCAGCTGGAGC CACCCGTGGCCTGGTGGCCTCCCTGGACACGCAGCTGGAGC < 41bp 1 0.334973489504376 1 0.516846001148224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM73 ENSG00000178809 CDS Human protein_coding chr7:75034246 chr7:75034255 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_7346 0 0 0 0 1 Cytosol 1 0.500231643918909 0.966307997703552 0.999536712162183 hm5C_site_10044 DeepMRMD:0.966307997703552;iRNA_m5C:0.999536712162183 10045 chr7 75573180 75573180 1 + T C rs578185736 75573189 + 75573169 75573209 41 TTGCAGGAAAGTCCAAAGGGCTGCGCGTCTCCTGTGGCTCA TTGCAGGAAAGCCCAAAGGGCTGCGCGTCTCCTGTGGCTCA < 41bp 1 0.410712014278695 1 0.0757639408111572 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573189 chr7:75573180 . . 0 12 hm5C_associated_SNPs_7347 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10045 DeepMRMD:1;iRNA_m5C:0.999536712157815 10046 chr7 75573180 75573180 1 + T C rs578185736 75573197 + 75573177 75573217 41 AAGTCCAAAGGGCTGCGCGTCTCCTGTGGCTCAGTCTTATT AAGCCCAAAGGGCTGCGCGTCTCCTGTGGCTCAGTCTTATT < 41bp 1 0.240811773551579 1 0.497926890850067 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573197 chr7:75573180 . . 0 4 hm5C_associated_SNPs_7348 0 0 1 0 0 unknown 1 0.500231643921058 1 0.999536712157884 hm5C_site_10046 DeepMRMD:1;iRNA_m5C:0.999536712157884 10047 chr7 75615978 75615978 1 + G A rs184275273 75615958 + 75615938 75615978 41 GGTGCATCCTCCTCAGCCCCCAGGCCAGGTGAGGTCCACCG GGTGCATCCTCCTCAGCCCCCAGGCCAGGTGAGGTCCACCA < 41bp 1 0.663772936553082 1 0.890208065509796 experiment 0.672454126893836 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POR ENSG00000127948 UTR3 Human protein_coding chr7:75615958 chr7:75615978 . . 0 41 hm5C_associated_SNPs_7349 1 0 1 0 0 Nucleus 1 0.500231643921093 0.219583868980408 0.999536712157815 hm5C_site_10047 DeepMRMD:0.219583868980408;iRNA_m5C:0.999536712157815 Antley-Bixler syndrome with genital anomalies and disordered steroidogenesis Antley-Bixler syndrome with genital anomalies and disordered steroidogenesis 10048 chr7 75916093 75916093 1 + C T rs139564006 75916113 + 75916093 75916133 41 CCAGGGAGTGGAGACGGGTCCCTGGGGAGGGAGCAGCTGAC TCAGGGAGTGGAGACGGGTCCCTGGGGAGGGAGCAGCTGAC < 41bp 1 0.347165416074163 1 0.372342735528946 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRRM3 ENSG00000177679 UTR3 Human protein_coding chr7:75916113 chr7:75916093 . . 0 1 hm5C_associated_SNPs_7350 0 0 0 0 0 exosome 1 0.50023164357207 1 0.99953671285586 hm5C_site_10048 DeepMRMD:1;iRNA_m5C:0.99953671285586 10049 chr7 75916107 75916107 1 + C A rs187943585 75916113 + 75916093 75916133 41 CCAGGGAGTGGAGACGGGTCCCTGGGGAGGGAGCAGCTGAC CCAGGGAGTGGAGAAGGGTCCCTGGGGAGGGAGCAGCTGAC < 41bp 1 0.367461020555429 1 0.415910810232162 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRRM3 ENSG00000177679 UTR3 Human protein_coding chr7:75916113 chr7:75916107 . . 0 15 hm5C_associated_SNPs_7351 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10049 DeepMRMD:1;iRNA_m5C:0.999536712157815 10050 chr7 75916119 75916119 1 + G A rs75097709 75916113 + 75916093 75916133 41 CCAGGGAGTGGAGACGGGTCCCTGGGGAGGGAGCAGCTGAC CCAGGGAGTGGAGACGGGTCCCTGGGAAGGGAGCAGCTGAC < 41bp 1 0.373096336905248 1 0.252230614423752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRRM3 ENSG00000177679 UTR3 Human protein_coding chr7:75916113 chr7:75916119 . . 0 27 hm5C_associated_SNPs_7352 0 0 0 0 0 exosome 1 0.500231644015148 1 0.999536711969704 hm5C_site_10050 DeepMRMD:1;iRNA_m5C:0.999536711969704 10051 chr7 75932065 75932065 1 + G C rs145369859 75932069 + 75932049 75932089 41 CCTTCTCGCTCCTGCGGGGCCCCAGCTGGGACCCCTTCCGC CCTTCTCGCTCCTGCGCGGCCCCAGCTGGGACCCCTTCCGC < 41bp 1 0.603230566430537 1 0.682890892028809 experiment 0.793538867138926 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75932069 chr7:75932065 synonymous SNV . 0 17 hm5C_associated_SNPs_7353 0 0 1 0 0 Cytosol 1 0.500231643921092 0.634218215942382 0.999536712157815 hm5C_site_10051 DeepMRMD:0.634218215942382;iRNA_m5C:0.999536712157815 10052 chr7 75932065 75932065 1 + G C rs145369859 75932070 + 75932050 75932090 41 CTTCTCGCTCCTGCGGGGCCCCAGCTGGGACCCCTTCCGCG CTTCTCGCTCCTGCGCGGCCCCAGCTGGGACCCCTTCCGCG < 41bp 1 0.383947721959672 1 0.464451730251312 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75932070 chr7:75932065 synonymous SNV . 0 16 hm5C_associated_SNPs_7354 0 0 1 0 0 Cytosol 1 0.500231644402125 1 0.99953671119575 hm5C_site_10052 DeepMRMD:1;iRNA_m5C:0.99953671119575 Eosinophil counts 10053 chr7 75932065 75932065 1 + G C rs145369859 75932080 + 75932060 75932100 41 CTGCGGGGCCCCAGCTGGGACCCCTTCCGCGACTGGTACCC CTGCGCGGCCCCAGCTGGGACCCCTTCCGCGACTGGTACCC < 41bp 1 0.234063248935476 1 0.0690224766731262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75932080 chr7:75932065 synonymous SNV . 0 6 hm5C_associated_SNPs_7355 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10053 DeepMRMD:1;iRNA_m5C:0.999536712157815 10054 chr7 75932065 75932065 1 + G C rs145369859 75932081 + 75932061 75932101 41 TGCGGGGCCCCAGCTGGGACCCCTTCCGCGACTGGTACCCG TGCGCGGCCCCAGCTGGGACCCCTTCCGCGACTGGTACCCG < 41bp 1 0.113195888134568 1 0.0494332909584045 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75932081 chr7:75932065 synonymous SNV . 0 5 hm5C_associated_SNPs_7356 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10054 DeepMRMD:1;iRNA_m5C:0.999536712157815 10055 chr7 75932065 75932065 1 + G C rs145369859 75932082 + 75932062 75932102 41 GCGGGGCCCCAGCTGGGACCCCTTCCGCGACTGGTACCCGC GCGCGGCCCCAGCTGGGACCCCTTCCGCGACTGGTACCCGC < 41bp 1 0.0896510472988823 1 0.215181767940521 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75932082 chr7:75932065 synonymous SNV . 0 4 hm5C_associated_SNPs_7357 0 0 1 0 0 Cytosol 1 0.500231643921091 1 0.999536712157819 hm5C_site_10055 DeepMRMD:1;iRNA_m5C:0.999536712157819 10056 chr7 75933439 75933439 1 + C T rs528301561 75933438 + 75933418 75933458 41 AGTCACCTTCGAGTCGCGGGCCCAGCTTGGGGGCCCAGAAG AGTCACCTTCGAGTCGCGGGCTCAGCTTGGGGGCCCAGAAG < 41bp 1 0.517871576045554 1 0.305636882781982 experiment 0.964256847908891 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933438 chr7:75933439 synonymous SNV . 0 22 hm5C_associated_SNPs_7358 1 0 1 0 0 Cytosol 1 0.50023164389465 1 0.9995367122107 hm5C_site_10056 DeepMRMD:1;iRNA_m5C:0.9995367122107 Charcot-Marie-Tooth disease type 2F Charcot-Marie-Tooth disease type 2F 10057 chr7 75933439 75933439 1 + C T rs528301561 75933440 + 75933420 75933460 41 TCACCTTCGAGTCGCGGGCCCAGCTTGGGGGCCCAGAAGCT TCACCTTCGAGTCGCGGGCTCAGCTTGGGGGCCCAGAAGCT < 41bp 1 0.551622704723691 1 0.318273693323135 experiment 0.896754590552618 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933440 chr7:75933439 synonymous SNV . 0 20 hm5C_associated_SNPs_7359 1 0 1 0 0 Cytosol 1 0.500231644512631 1 0.999536710974738 hm5C_site_10057 DeepMRMD:1;iRNA_m5C:0.999536710974738 Charcot-Marie-Tooth disease type 2F Charcot-Marie-Tooth disease type 2F 10058 chr7 75933439 75933439 1 + C T rs528301561 75933451 + 75933431 75933471 41 TCGCGGGCCCAGCTTGGGGGCCCAGAAGCTGCAAAATCCGA TCGCGGGCTCAGCTTGGGGGCCCAGAAGCTGCAAAATCCGA < 41bp 1 0.147098378884744 1 0.0977120399475098 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933451 chr7:75933439 synonymous SNV . 0 9 hm5C_associated_SNPs_7360 1 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_10058 DeepMRMD:1;iRNA_m5C:0.999536712157815 Charcot-Marie-Tooth disease type 2F Charcot-Marie-Tooth disease type 2F 10059 chr7 75933439 75933439 1 + C T rs528301561 75933452 + 75933432 75933472 41 CGCGGGCCCAGCTTGGGGGCCCAGAAGCTGCAAAATCCGAT CGCGGGCTCAGCTTGGGGGCCCAGAAGCTGCAAAATCCGAT < 41bp 1 0.393483763179709 1 0.174637913703918 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933452 chr7:75933439 synonymous SNV . 0 8 hm5C_associated_SNPs_7361 1 0 1 0 0 Cytosol 1 0.500231643920071 1 0.999536712159857 hm5C_site_10059 DeepMRMD:1;iRNA_m5C:0.999536712159857 Charcot-Marie-Tooth disease type 2F Charcot-Marie-Tooth disease type 2F 10060 chr7 75933445 75933445 1 + T C rs34771861 75933438 + 75933418 75933458 41 AGTCACCTTCGAGTCGCGGGCCCAGCTTGGGGGCCCAGAAG AGTCACCTTCGAGTCGCGGGCCCAGCTCGGGGGCCCAGAAG < 41bp 1 0.293637658827655 1 0.133470565080643 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933438 chr7:75933445 synonymous SNV . 0 28 hm5C_associated_SNPs_7363 2 0 1 0 0 Cytosol 1 0.500231653599434 1 0.999536692801133 hm5C_site_10060 DeepMRMD:1;iRNA_m5C:0.999536692801133 not specified not specified 10061 chr7 75933445 75933445 1 + T C rs34771861 75933439 + 75933419 75933459 41 GTCACCTTCGAGTCGCGGGCCCAGCTTGGGGGCCCAGAAGC GTCACCTTCGAGTCGCGGGCCCAGCTCGGGGGCCCAGAAGC < 41bp 1 0.237907845492159 1 0.163550227880478 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933439 chr7:75933445 synonymous SNV . 0 27 hm5C_associated_SNPs_7364 2 0 1 0 0 Cytosol 1 0.500231643916216 1 0.999536712167567 hm5C_site_10061 DeepMRMD:1;iRNA_m5C:0.999536712167567 not specified not specified 10062 chr7 75933445 75933445 1 + T C rs34771861 75933440 + 75933420 75933460 41 TCACCTTCGAGTCGCGGGCCCAGCTTGGGGGCCCAGAAGCT TCACCTTCGAGTCGCGGGCCCAGCTCGGGGGCCCAGAAGCT < 41bp 1 0.413866829495371 1 0.144197732210159 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933440 chr7:75933445 synonymous SNV . 0 26 hm5C_associated_SNPs_7365 2 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10062 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 10063 chr7 75933445 75933445 1 + T C rs34771861 75933451 + 75933431 75933471 41 TCGCGGGCCCAGCTTGGGGGCCCAGAAGCTGCAAAATCCGA TCGCGGGCCCAGCTCGGGGGCCCAGAAGCTGCAAAATCCGA < 41bp 1 0.141106160086447 1 0.117381304502487 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933451 chr7:75933445 synonymous SNV . 0 15 hm5C_associated_SNPs_7366 2 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10063 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 10064 chr7 75933445 75933445 1 + T C rs34771861 75933452 + 75933432 75933472 41 CGCGGGCCCAGCTTGGGGGCCCAGAAGCTGCAAAATCCGAT CGCGGGCCCAGCTCGGGGGCCCAGAAGCTGCAAAATCCGAT < 41bp 1 0.364289535422199 1 0.138187021017075 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933452 chr7:75933445 synonymous SNV . 0 14 hm5C_associated_SNPs_7367 2 0 1 0 0 Cytosol 1 0.500231858338689 1 0.999536283322623 hm5C_site_10064 DeepMRMD:1;iRNA_m5C:0.999536283322623 not specified not specified 10065 chr7 76112199 76112199 1 + C T rs148430404 76112193 + 76112173 76112213 41 GAACTGGCCCCGTGTCAGGCCGCTACCGCCACTCCATGACC GAACTGGCCCCGTGTCAGGCCGCTACTGCCACTCCATGACC < 41bp 1 0.504156831027981 1 0.0905680060386658 experiment 0.991686337944038 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76112193 chr7:76112199 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_7368 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10065 DeepMRMD:1;iRNA_m5C:0.999536712157815 10066 chr7 77256319 77256319 1 + C T rs114128568 77256320 + 77256300 77256340 41 GTTTTGAGATTAAGAAGGTCCCTCTCCAAGAGGGACCAAAA GTTTTGAGATTAAGAAGGTTCCTCTCCAAGAGGGACCAAAA < 41bp 1 0.0427521724248908 1 0.043861985206604 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256320 chr7:77256319 synonymous SNV . 0 20 hm5C_associated_SNPs_7370 0 0 1 0 0 Ribosome 1 0.500231643557362 1 0.999536712885276 hm5C_site_10066 DeepMRMD:1;iRNA_m5C:0.999536712885276 10067 chr7 77256319 77256319 1 + C T rs114128568 77256321 + 77256301 77256341 41 TTTTGAGATTAAGAAGGTCCCTCTCCAAGAGGGACCAAAAA TTTTGAGATTAAGAAGGTTCCTCTCCAAGAGGGACCAAAAA < 41bp 1 0.1238329704658 1 0.0571072101593018 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256321 chr7:77256319 synonymous SNV . 0 19 hm5C_associated_SNPs_7371 0 0 1 0 0 Ribosome 1 0.499955055349876 1 1 hm5C_site_10067 DeepMRMD:1;iRNA_m5C:1 10068 chr7 77256319 77256319 1 + C T rs114128568 77256335 + 77256315 77256355 41 AGGTCCCTCTCCAAGAGGGACCAAAAAGTTTTGATGGGAAC AGGTTCCTCTCCAAGAGGGACCAAAAAGTTTTGATGGGAAC < 41bp 1 0.0954674461842243 1 0.276238083839417 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256335 chr7:77256319 synonymous SNV . 0 5 hm5C_associated_SNPs_7372 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_10068 DeepMRMD:1;iRNA_m5C:0.999536712157815 10069 chr7 77256319 77256319 1 + C T rs114128568 77256336 + 77256316 77256356 41 GGTCCCTCTCCAAGAGGGACCAAAAAGTTTTGATGGGAACA GGTTCCTCTCCAAGAGGGACCAAAAAGTTTTGATGGGAACA < 41bp 1 0.23493518778604 1 0.530792236328125 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256336 chr7:77256319 synonymous SNV . 0 4 hm5C_associated_SNPs_7373 0 0 1 0 0 Ribosome 1 0.500231643921078 0.93841552734375 0.999536712157843 hm5C_site_10069 DeepMRMD:0.93841552734375;iRNA_m5C:0.999536712157843 10070 chr7 77539625 77539625 1 + T C rs61736552 77539642 + 77539622 77539662 41 AGATAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAA AGACAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAA < 41bp 1 0.247385888598772 1 0.174306452274323 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHTF2 ENSG00000006576 CDS Human protein_coding chr7:77539642 chr7:77539625 synonymous SNV . 0 4 hm5C_associated_SNPs_7374 0 0 1 0 1 Ribosome 1 0.500209202869869 1 0.999581594260263 hm5C_site_10070 DeepMRMD:1;iRNA_m5C:0.999581594260263 10071 chr7 79089309 79089309 1 + G T rs559591922 79089310 + 79089290 79089330 41 GTTTATAGCAGCTAAGTTTGCATGAAAACACCAGGGCTGTT GTTTATAGCAGCTAAGTTTTCATGAAAACACCAGGGCTGTT < 41bp 1 0.581912106087988 1 0.467082411050797 experiment 0.836175787824023 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAGI2-AS3 ENSG00000234456 ncRNA_exonic Human processed_transcript chr7:79089310 chr7:79089309 . . 0 20 hm5C_associated_SNPs_7375 0 0 1 0 0 unknown 1 0.500232754872671 1 0.999534490254659 hm5C_site_10071 DeepMRMD:1;iRNA_m5C:0.999534490254659 10072 chr7 79089328 79089328 1 + G A rs78147910 79089310 + 79089290 79089330 41 GTTTATAGCAGCTAAGTTTGCATGAAAACACCAGGGCTGTT GTTTATAGCAGCTAAGTTTGCATGAAAACACCAGGGCTATT < 41bp 1 0.505288311245097 1 0.320528864860535 experiment 0.989423377509806 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAGI2-AS3 ENSG00000234456 ncRNA_exonic Human processed_transcript chr7:79089310 chr7:79089328 . . 0 39 hm5C_associated_SNPs_7376 0 0 1 0 0 unknown 1 0.500233593232442 1 0.999532813535116 hm5C_site_10072 DeepMRMD:1;iRNA_m5C:0.999532813535116 10073 chr7 79842157 79842157 1 + T C rs10241877 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAAATCAAAAAGAGCCCCCTCACTATATGCTATCCAG < 41bp 1 0.0523136022493544 1 0.0699186027050018 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842157 synonymous SNV . 0 22 hm5C_associated_SNPs_7377 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10073 DeepMRMD:1;iRNA_m5C:0.999536712157815 10074 chr7 87505575 87505575 1 + C A rs192771636 87505595 - 87505575 87505615 41 TTCCGTTGCTCTCTCAGTCTCAGACCCGGGCTCTCGGTCCG TTCCGTTGCTCTCTCAGTCTCAGACCCGGGCTCTCGGTCCT < 41bp 1 0.61286310613823 1 0.504306554794312 experiment 0.774273787723541 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DBF4;SLC25A40 ENSG00000006634;ENSG00000075303 UTR5 Human other chr7:87505595 chr7:87505575 . . 0 41 hm5C_associated_SNPs_7379 0 0 1 0 0 unknown 1 0.500231643907573 0.991386890411376 0.999536712184854 hm5C_site_10074 DeepMRMD:0.991386890411376;iRNA_m5C:0.999536712184854 10075 chr7 90043756 90043756 1 + T C rs571569072 90043743 + 90043723 90043763 41 ATTTCCTTGAGCATATATCTCTGCCTAACACTTTAGTAGGT ATTTCCTTGAGCATATATCTCTGCCTAACACTTCAGTAGGT < 41bp 1 0.579015625514597 1 0.20002606511116 experiment 0.841968748970807 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLDN12 ENSG00000273299 ncRNA_intronic Human processed_transcript chr7:90043743 chr7:90043756 . . 0 34 hm5C_associated_SNPs_7380 0 0 1 0 0 Ribosome 1 0.500231643813843 1 0.999536712372314 hm5C_site_10075 DeepMRMD:1;iRNA_m5C:0.999536712372314 10076 chr7 90043756 90043756 1 + T C rs571569072 90043746 + 90043726 90043766 41 TCCTTGAGCATATATCTCTGCCTAACACTTTAGTAGGTGCT TCCTTGAGCATATATCTCTGCCTAACACTTCAGTAGGTGCT < 41bp 1 0.113288798318074 1 0.0665393173694611 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLDN12 ENSG00000273299 ncRNA_intronic Human processed_transcript chr7:90043746 chr7:90043756 . . 0 31 hm5C_associated_SNPs_7381 0 0 1 0 0 Ribosome 1 0.500231643872606 1 0.999536712254789 hm5C_site_10076 DeepMRMD:1;iRNA_m5C:0.999536712254789 10077 chr7 90043756 90043756 1 + T C rs571569072 90043747 + 90043727 90043767 41 CCTTGAGCATATATCTCTGCCTAACACTTTAGTAGGTGCTA CCTTGAGCATATATCTCTGCCTAACACTTCAGTAGGTGCTA < 41bp 1 0.272422261973018 1 0.0492574870586395 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLDN12 ENSG00000273299 ncRNA_intronic Human processed_transcript chr7:90043747 chr7:90043756 . . 0 30 hm5C_associated_SNPs_7382 0 0 1 0 0 Ribosome 1 0.50023164140971 1 0.99953671718058 hm5C_site_10077 DeepMRMD:1;iRNA_m5C:0.99953671718058 10078 chr7 90043756 90043756 1 + T C rs571569072 90043751 + 90043731 90043771 41 GAGCATATATCTCTGCCTAACACTTTAGTAGGTGCTATAGA GAGCATATATCTCTGCCTAACACTTCAGTAGGTGCTATAGA < 41bp 1 0.246624807285957 1 0.128095090389252 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLDN12 ENSG00000273299 ncRNA_intronic Human processed_transcript chr7:90043751 chr7:90043756 . . 0 26 hm5C_associated_SNPs_7383 0 0 1 0 0 Ribosome 1 0.500231780722531 1 0.999536438554938 hm5C_site_10078 DeepMRMD:1;iRNA_m5C:0.999536438554938 10079 chr7 90043765 90043765 1 + C T rs556714945 90043746 + 90043726 90043766 41 TCCTTGAGCATATATCTCTGCCTAACACTTTAGTAGGTGCT TCCTTGAGCATATATCTCTGCCTAACACTTTAGTAGGTGTT < 41bp 1 0.0862675571570876 1 0.044061690568924 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLDN12 ENSG00000273299 ncRNA_intronic Human processed_transcript chr7:90043746 chr7:90043765 . . 0 40 hm5C_associated_SNPs_7384 0 0 1 0 0 Ribosome 1 0.500231650456515 1 0.99953669908697 hm5C_site_10079 DeepMRMD:1;iRNA_m5C:0.99953669908697 10080 chr7 90043765 90043765 1 + C T rs556714945 90043747 + 90043727 90043767 41 CCTTGAGCATATATCTCTGCCTAACACTTTAGTAGGTGCTA CCTTGAGCATATATCTCTGCCTAACACTTTAGTAGGTGTTA < 41bp 1 0.223555170901711 1 0.0354544520378113 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLDN12 ENSG00000273299 ncRNA_intronic Human processed_transcript chr7:90043747 chr7:90043765 . . 0 39 hm5C_associated_SNPs_7385 0 0 1 0 0 Ribosome 1 0.500231643901401 1 0.999536712197198 hm5C_site_10080 DeepMRMD:1;iRNA_m5C:0.999536712197198 10081 chr7 90043765 90043765 1 + C T rs556714945 90043751 + 90043731 90043771 41 GAGCATATATCTCTGCCTAACACTTTAGTAGGTGCTATAGA GAGCATATATCTCTGCCTAACACTTTAGTAGGTGTTATAGA < 41bp 1 0.29416165568795 1 0.0796098113059998 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLDN12 ENSG00000273299 ncRNA_intronic Human processed_transcript chr7:90043751 chr7:90043765 . . 0 35 hm5C_associated_SNPs_7386 0 0 1 0 0 Ribosome 1 0.500227514656772 1 0.999544970686455 hm5C_site_10081 DeepMRMD:1;iRNA_m5C:0.999544970686455 10082 chr7 90233553 90233553 1 + C G rs17866277 90233548 + 90233528 90233568 41 ATAGCTTTGAAGAAAGATGACACCACCTTTGATGAGGTAGG ATAGCTTTGAAGAAAGATGACACCAGCTTTGATGAGGTAGG < 41bp 1 0.350984273928196 1 0.122409403324127 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90233548 chr7:90233553 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_7387 0 0 0 0 2 Nucleus 1 0.500229698724292 1 0.999540602551416 hm5C_site_10082 DeepMRMD:1;iRNA_m5C:0.999540602551416 10083 chr7 91622303 91622303 1 + G C rs144888041 91622295 + 91622275 91622315 41 AAAGTGAGTTGGCTGGGAAGCAGCATGAGATTGAAGAGCTA AAAGTGAGTTGGCTGGGAAGCAGCATGACATTGAAGAGCTA < 41bp 1 0.676723176405635 1 0.727997422218323 experiment 0.646553647188731 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91622295 chr7:91622303 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_7389 5 0 1 0 1 Nucleus 1 0.500231434963457 0.544005155563354 0.999537130073086 hm5C_site_10083 DeepMRMD:0.544005155563354;iRNA_m5C:0.999537130073086 not provided not provided 10084 chr7 91622303 91622303 1 + G C rs144888041 91622298 + 91622278 91622318 41 GTGAGTTGGCTGGGAAGCAGCATGAGATTGAAGAGCTAAAC GTGAGTTGGCTGGGAAGCAGCATGACATTGAAGAGCTAAAC < 41bp 1 0.430714280703727 1 0.447132378816605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91622298 chr7:91622303 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_7390 5 0 1 0 1 Nucleus 1 0.500231626530319 1 0.999536746939363 hm5C_site_10084 DeepMRMD:1;iRNA_m5C:0.999536746939363 not provided not provided 10085 chr7 91714870 91714870 1 + A G rs201958512 91714852 + 91714832 91714872 41 TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTGTA < 41bp 1 0.265544762863167 1 0.0507204234600067 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714852 chr7:91714870 nonsynonymous SNV 0.467 0 39 hm5C_associated_SNPs_7391 1 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_10085 DeepMRMD:1;iRNA_m5C:0.999536712157816 not provided not provided 10086 chr7 91714870 91714870 1 + A G rs201958512 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTGTAGTGA < 41bp 1 0.429409075487744 1 0.107188999652863 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714870 nonsynonymous SNV 0.467 0 35 hm5C_associated_SNPs_7392 1 0 0 0 1 Nucleus 1 0.500231643921094 1 0.999536712157811 hm5C_site_10086 DeepMRMD:1;iRNA_m5C:0.999536712157811 not provided not provided 10087 chr7 91714870 91714870 1 + A G rs201958512 91714864 + 91714844 91714884 41 GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG GGTGCTTTCTCTCACTGAGTCTCCCTGTAGTGATGGAGAGG < 41bp 1 0.210452970025075 1 0.314582973718643 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714864 chr7:91714870 nonsynonymous SNV 0.467 0 27 hm5C_associated_SNPs_7393 1 0 0 0 1 Nucleus 1 0.500231643921598 1 0.999536712156804 hm5C_site_10087 DeepMRMD:1;iRNA_m5C:0.999536712156804 not provided not provided 10088 chr7 91714870 91714870 1 + A G rs201958512 91714867 + 91714847 91714887 41 GCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACC GCTTTCTCTCACTGAGTCTCCCTGTAGTGATGGAGAGGACC < 41bp 1 0.0397416145510948 1 0.0906060039997101 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714867 chr7:91714870 nonsynonymous SNV 0.467 0 24 hm5C_associated_SNPs_7394 1 0 0 0 1 Nucleus 1 0.500231643983251 1 0.999536712033497 hm5C_site_10088 DeepMRMD:1;iRNA_m5C:0.999536712033497 not provided not provided 10089 chr7 91714870 91714870 1 + A G rs201958512 91714868 + 91714848 91714888 41 CTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACCA CTTTCTCTCACTGAGTCTCCCTGTAGTGATGGAGAGGACCA < 41bp 1 0.335828845186669 1 0.169890075922012 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714868 chr7:91714870 nonsynonymous SNV 0.467 0 23 hm5C_associated_SNPs_7395 1 0 0 0 1 Nucleus 1 0.500231892572004 1 0.999536214855991 hm5C_site_10089 DeepMRMD:1;iRNA_m5C:0.999536214855991 not provided not provided 10090 chr7 92020515 92020515 1 + G A rs79306962 92020521 + 92020501 92020541 41 GAAGACCTTGCCCAGAAAGTCAATAGGCCTTACCTTCGCAC GAAGACCTTGCCCAAAAAGTCAATAGGCCTTACCTTCGCAC < 41bp 1 0.554015248530558 1 0.251896888017654 experiment 0.891969502938885 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92020521 chr7:92020515 synonymous SNV . 0 15 hm5C_associated_SNPs_7396 0 0 1 0 1 Cytosol 1 0.500231643920867 1 0.999536712158266 hm5C_site_10090 DeepMRMD:1;iRNA_m5C:0.999536712158266 10091 chr7 92077139 92077139 1 + T C rs532003876 92077127 + 92077107 92077147 41 AAGGGAGCGCAGGGGGAGATCCTCTGCCATCATTGCACTGG AAGGGAGCGCAGGGGGAGATCCTCTGCCATCACTGCACTGG < 41bp 1 0.330823224572226 1 0.236449986696243 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GATAD1 ENSG00000157259 CDS Human protein_coding chr7:92077127 chr7:92077139 synonymous SNV . 0 33 hm5C_associated_SNPs_7397 0 0 1 0 0 Ribosome 1 0.500231643923583 1 0.999536712152834 hm5C_site_10091 DeepMRMD:1;iRNA_m5C:0.999536712152834 10092 chr7 94057007 94057007 1 + C T rs34691365 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC TGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC < 41bp 1 0.119116859684836 1 0.0228131115436554 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057007 synonymous SNV . 0 1 hm5C_associated_SNPs_7401 3 0 0 0 1 Endoplasmic reticulum 1 0.500231642716621 1 0.999536714566759 hm5C_site_10092 DeepMRMD:1;iRNA_m5C:0.999536714566759 Osteogenesis imperfecta Osteogenesis imperfecta 10093 chr7 94294207 94294207 1 + G A rs148037544 94294196 + 94294176 94294216 41 TCTCCATTCTTCCCTGTCGTCCTAGGGGTTCGCTGGCTGAG TCTCCATTCTTCCCTGTCGTCCTAGGGGTTCACTGGCTGAG < 41bp 1 0.130021621978397 1 0.154942095279694 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PEG10 ENSG00000242265 UTR3 Human protein_coding chr7:94294196 chr7:94294207 . 0.867 2 32 hm5C_associated_SNPs_7402 0 0 1 0 0 Endoplasmic reticulum 1 0.50023127555173 1 0.999537448896541 hm5C_site_10093 DeepMRMD:1;iRNA_m5C:0.999537448896541 10094 chr7 94294207 94294207 1 + G A rs148037544 94294197 + 94294177 94294217 41 CTCCATTCTTCCCTGTCGTCCTAGGGGTTCGCTGGCTGAGC CTCCATTCTTCCCTGTCGTCCTAGGGGTTCACTGGCTGAGC < 41bp 1 0.553463579135009 1 0.637901186943054 experiment 0.893072841729983 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PEG10 ENSG00000242265 UTR3 Human protein_coding chr7:94294197 chr7:94294207 . 0.867 2 31 hm5C_associated_SNPs_7403 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.724197626113892 0.999536712157815 hm5C_site_10094 DeepMRMD:0.724197626113892;iRNA_m5C:0.999536712157815 10095 chr7 94294798 94294798 1 + C T rs182259108 94294785 + 94294765 94294805 41 TACCTGGATACCAAACATACCCCACATATGCCGCGTACCCG TACCTGGATACCAAACATACCCCACATATGCCGTGTACCCG < 41bp 1 0.0615838064563617 1 0.10614949464798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PEG10 ENSG00000242265 UTR3 Human protein_coding chr7:94294785 chr7:94294798 . 0.002 0 34 hm5C_associated_SNPs_7404 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643844559 1 0.999536712310882 hm5C_site_10095 DeepMRMD:1;iRNA_m5C:0.999536712310882 10096 chr7 94294798 94294798 1 + C T rs182259108 94294789 + 94294769 94294809 41 TGGATACCAAACATACCCCACATATGCCGCGTACCCGACCT TGGATACCAAACATACCCCACATATGCCGTGTACCCGACCT < 41bp 1 0.0648619151231879 1 0.0180196762084961 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PEG10 ENSG00000242265 UTR3 Human protein_coding chr7:94294789 chr7:94294798 . 0.002 0 30 hm5C_associated_SNPs_7405 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920938 1 0.999536712158123 hm5C_site_10096 DeepMRMD:1;iRNA_m5C:0.999536712158123 10097 chr7 97822931 97822931 1 + G A rs200084646 97822929 + 97822909 97822949 41 GCATCCCGCTCCCGAGGGCACCGCAGACTCAGAACCAGCCA GCATCCCGCTCCCGAGGGCACCACAGACTCAGAACCAGCCA < 41bp 1 0.46332915026724 1 0.0665788054466248 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97822929 chr7:97822931 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_7406 0 0 1 0 0 Nucleus 1 0.500231644442932 1 0.999536711114135 hm5C_site_10097 DeepMRMD:1;iRNA_m5C:0.999536711114135 10098 chr7 97838327 97838327 1 + A G rs4318996 97838342 + 97838322 97838362 41 TCCTTAACTCAGCCCATCATCTGAAAATTCAGAAGTGAACC TCCTTGACTCAGCCCATCATCTGAAAATTCAGAAGTGAACC < 41bp 1 0.6590963727375 1 0.381675630807877 experiment 0.681807254525001 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMTK2 ENSG00000164715 UTR3 Human protein_coding chr7:97838342 chr7:97838327 . . 0 6 hm5C_associated_SNPs_7407 0 0 1 0 0 Nucleus 1 0.50023164393805 1 0.999536712123899 hm5C_site_10098 DeepMRMD:1;iRNA_m5C:0.999536712123899 10099 chr7 97911020 97911020 1 + C T rs192143197 97911006 + 97910986 97911026 41 CGCGTCTGCCTCAGAGGGGCCCGAGCCACCCGGTCCGCCGC CGCGTCTGCCTCAGAGGGGCCCGAGCCACCCGGTTCGCCGC < 41bp 1 0.565331104920496 1 0.371441900730133 experiment 0.869337790159008 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BRI3 ENSG00000164713 UTR5 Human protein_coding chr7:97911006 chr7:97911020 . . 0 35 hm5C_associated_SNPs_7408 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10099 DeepMRMD:1;iRNA_m5C:0.999536712157815 10100 chr7 97911020 97911020 1 + C T rs192143197 97911011 + 97910991 97911031 41 CTGCCTCAGAGGGGCCCGAGCCACCCGGTCCGCCGCGTCCC CTGCCTCAGAGGGGCCCGAGCCACCCGGTTCGCCGCGTCCC < 41bp 1 0.34467572878909 1 0.0471802651882172 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BRI3 ENSG00000164713 UTR5 Human protein_coding chr7:97911011 chr7:97911020 . . 0 30 hm5C_associated_SNPs_7410 0 0 1 0 0 Cytosol 1 0.50023163552997 1 0.99953672894006 hm5C_site_10100 DeepMRMD:1;iRNA_m5C:0.99953672894006 10101 chr7 98528420 98528420 1 + A G rs113886181 98528424 + 98528404 98528444 41 AGACATTCCTGAAAGCACTTCTCTTTGTCATGATGGACTTA AGACATTCCTGAAAGCGCTTCTCTTTGTCATGATGGACTTA < 41bp 1 0.0398584816230933 1 0.0929222106933594 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528424 chr7:98528420 synonymous SNV . 0 17 hm5C_associated_SNPs_7411 0 0 1 0 1 Nucleus 1 0.500241384297156 1 0.999517231405688 hm5C_site_10101 DeepMRMD:1;iRNA_m5C:0.999517231405688 10102 chr7 98609780 98609780 1 + G A rs75387850 98609794 + 98609774 98609814 41 TCTCTCGGCCGCCGGGCAGCCAGAGAACATGGACAGCCAGC TCTCTCAGCCGCCGGGCAGCCAGAGAACATGGACAGCCAGC < 41bp 1 0.329498795301472 1 0.847151756286621 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98609794 chr7:98609780 synonymous SNV . 0 7 hm5C_associated_SNPs_7412 0 0 1 0 1 Nucleus 1 0.500231818782103 0.305696487426758 0.999536362435795 hm5C_site_10102 DeepMRMD:0.305696487426758;iRNA_m5C:0.999536362435795 10103 chr7 98609783 98609783 1 + C T rs219817 98609794 + 98609774 98609814 41 TCTCTCGGCCGCCGGGCAGCCAGAGAACATGGACAGCCAGC TCTCTCGGCTGCCGGGCAGCCAGAGAACATGGACAGCCAGC < 41bp 1 0.32005075022844 1 0.868319988250732 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98609794 chr7:98609783 synonymous SNV . 0 10 hm5C_associated_SNPs_7413 0 0 1 0 1 Nucleus 1 0.500231663776027 0.263360023498536 0.999536672447947 hm5C_site_10103 DeepMRMD:0.263360023498536;iRNA_m5C:0.999536672447947 10104 chr7 98630650 98630650 1 + C T rs150893399 98630662 - 98630642 98630682 41 AACCTTCCGAAGGCCCATACCTGGTAAGCACCGCGGCCAGG AACCTTCCGAAGGCCCATACCTGGTAAGCACCACGGCCAGG < 41bp 1 0.667310227855243 1 0.110690146684647 experiment 0.665379544289515 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LOC101927550 ENSG00000242687 ncRNA_exonic Human antisense chr7:98630662 chr7:98630650 . . 0 33 hm5C_associated_SNPs_7414 0 0 1 0 2 unknown 1 0.500231643921243 1 0.999536712157515 hm5C_site_10104 DeepMRMD:1;iRNA_m5C:0.999536712157515 10105 chr7 99156326 99156326 1 + C G rs376093132 99156310 + 99156290 99156330 41 GGAAGTGCCACCGAGAAGCGCCGGCCTCGGGGCTGTCTACA GGAAGTGCCACCGAGAAGCGCCGGCCTCGGGGCTGTGTACA < 41bp 1 0.42836460739525 1 0.778043210506439 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control ZNF655 ENSG00000197343;ENSG00000272647 UTR5 Human other chr7:99156310 chr7:99156326 . . 0 37 hm5C_associated_SNPs_7416 0 0 1 0 1 Cytosol 1 0.500231644475537 0.443913578987122 0.999536711048926 hm5C_site_10105 DeepMRMD:0.443913578987122;iRNA_m5C:0.999536711048926 10106 chr7 99159522 99159522 1 + C A rs141089610 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTACTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC < 41bp 1 0.216555265306039 1 0.144637674093246 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159522 nonsynonymous SNV 0.999 0 8 hm5C_associated_SNPs_7417 0 0 1 0 2 Cytosol 1 0.500231643921078 1 0.999536712157845 hm5C_site_10106 DeepMRMD:1;iRNA_m5C:0.999536712157845 10107 chr7 99172693 99172693 1 + G A rs117784619 99172684 + 99172664 99172704 41 AATGATGCCCAAGGTTTTAGCTGTCTTGTGTGCATCCACAG AATGATGCCCAAGGTTTTAGCTGTCTTGTATGCATCCACAG < 41bp 1 0.484706197527575 1 0.0545627772808075 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF655 ENSG00000197343 UTR3 Human protein_coding chr7:99172684 chr7:99172693 . . 0 30 hm5C_associated_SNPs_7418 0 0 1 0 0 Cytosol 1 0.500231611847825 1 0.999536776304351 hm5C_site_10107 DeepMRMD:1;iRNA_m5C:0.999536776304351 10108 chr7 99228045 99228045 1 + C T rs147049372 99228030 + 99228010 99228050 41 TTGCCTGCAGGGTCATAGCTCAGACTCTTCCCCCACCCCCT TTGCCTGCAGGGTCATAGCTCAGACTCTTCCCCCATCCCCT < 41bp 1 0.221584981089564 1 0.127175122499466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZSCAN25 ENSG00000197037 UTR3 Human protein_coding chr7:99228030 chr7:99228045 . . 0 36 hm5C_associated_SNPs_7419 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_10108 DeepMRMD:1;iRNA_m5C:0.999536712157814 10109 chr7 99627504 99627504 1 + C G rs148669042 99627493 + 99627473 99627513 41 TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCC TCCTCCCCCAGCTCTTCCTGCTGCCCACATTGCTGCACCCC < 41bp 1 0.284315702830375 1 0.229211270809174 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627493 chr7:99627504 nonsynonymous SNV 0.486 2 32 hm5C_associated_SNPs_7420 0 0 1 0 2 Cytosol 1 0.500231644790462 1 0.999536710419075 hm5C_site_10109 DeepMRMD:1;iRNA_m5C:0.999536710419075 10110 chr7 99627504 99627504 1 + C G rs148669042 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCACATTGCTGCACCCCCTCAT < 41bp 1 0.567850986705861 1 0.328889906406403 experiment 0.864298026588279 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627504 nonsynonymous SNV 0.486 2 27 hm5C_associated_SNPs_7421 0 0 1 0 2 Cytosol 1 0.50023164392107 1 0.99953671215786 hm5C_site_10110 DeepMRMD:1;iRNA_m5C:0.99953671215786 10111 chr7 99627508 99627508 1 + C T rs138748181 99627493 + 99627473 99627513 41 TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCC TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGTACCCC < 41bp 1 0.228377679334543 1 0.17718106508255 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627493 chr7:99627508 nonsynonymous SNV 0.452 0 36 hm5C_associated_SNPs_7422 0 0 1 0 2 Cytosol 1 0.500233225162163 1 0.999533549675674 hm5C_site_10111 DeepMRMD:1;iRNA_m5C:0.999533549675674 10112 chr7 99627508 99627508 1 + C T rs138748181 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCACATTCCTGTACCCCCTCAT < 41bp 1 0.462030181580825 1 0.151401489973068 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627508 nonsynonymous SNV 0.452 0 31 hm5C_associated_SNPs_7423 0 0 1 0 2 Cytosol 1 0.500231602157898 1 0.999536795684204 hm5C_site_10112 DeepMRMD:1;iRNA_m5C:0.999536795684204 10113 chr7 99701297 99701297 1 + G A rs113020957 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCGCCCCGTCCTATCCAGTCGCTCTGACCAGGTGAGGGAA < 41bp 1 0.398284360356705 1 0.180477470159531 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701297 synonymous SNV . 0 14 hm5C_associated_SNPs_7424 0 0 1 0 2 Cytosol 1 0.500231643330594 1 0.999536713338813 hm5C_site_10113 DeepMRMD:1;iRNA_m5C:0.999536713338813 10114 chr7 99704796 99704796 1 + A T rs13309 99704776 + 99704756 99704796 41 GACATGAAGGAAGCAATCTACAACTTCCTTCCGCTTAGCGA GACATGAAGGAAGCAATCTACAACTTCCTTCCGCTTAGCGT < 41bp 1 0.504167861223112 1 0.187680631875992 experiment 0.991664277553776 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP4M1;TAF6 ENSG00000106290;ENSG00000221838 UTR3 Human other chr7:99704776 chr7:99704796 . . 0 41 hm5C_associated_SNPs_7425 0 0 0 0 0 unknown 1 0.500231643921219 1 0.999536712157562 hm5C_site_10114 DeepMRMD:1;iRNA_m5C:0.999536712157562 10115 chr7 99704796 99704796 1 + A T rs13309 99704779 + 99704759 99704799 41 ATGAAGGAAGCAATCTACAACTTCCTTCCGCTTAGCGAGCA ATGAAGGAAGCAATCTACAACTTCCTTCCGCTTAGCGTGCA < 41bp 1 0.247913999166906 1 0.13975527882576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP4M1;TAF6 ENSG00000106290;ENSG00000221838 UTR3 Human other chr7:99704779 chr7:99704796 . . 0 38 hm5C_associated_SNPs_7426 0 0 0 0 0 unknown 1 0.50023164392115 1 0.9995367121577 hm5C_site_10115 DeepMRMD:1;iRNA_m5C:0.9995367121577 Tonsillectomy 10116 chr7 99704796 99704796 1 + A T rs13309 99704782 + 99704762 99704802 41 AAGGAAGCAATCTACAACTTCCTTCCGCTTAGCGAGCATGC AAGGAAGCAATCTACAACTTCCTTCCGCTTAGCGTGCATGC < 41bp 1 0.0541561783185519 1 0.0145236253738403 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP4M1;TAF6 ENSG00000106290;ENSG00000221838 UTR3 Human other chr7:99704782 chr7:99704796 . . 0 35 hm5C_associated_SNPs_7427 0 0 0 0 0 unknown 1 0.500231643920967 1 0.999536712158066 hm5C_site_10116 DeepMRMD:1;iRNA_m5C:0.999536712158066 10117 chr7 99704796 99704796 1 + A T rs13309 99704783 + 99704763 99704803 41 AGGAAGCAATCTACAACTTCCTTCCGCTTAGCGAGCATGCA AGGAAGCAATCTACAACTTCCTTCCGCTTAGCGTGCATGCA < 41bp 1 0.15040784277588 1 0.0290581285953522 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP4M1;TAF6 ENSG00000106290;ENSG00000221838 UTR3 Human other chr7:99704783 chr7:99704796 . . 0 34 hm5C_associated_SNPs_7428 0 0 0 0 0 unknown 1 0.500231654668539 1 0.999536690662921 hm5C_site_10117 DeepMRMD:1;iRNA_m5C:0.999536690662921 10118 chr7 99704796 99704796 1 + A T rs13309 99704786 + 99704766 99704806 41 AAGCAATCTACAACTTCCTTCCGCTTAGCGAGCATGCATGT AAGCAATCTACAACTTCCTTCCGCTTAGCGTGCATGCATGT < 41bp 1 0.221150918999008 1 0.464811652898788 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP4M1;TAF6 ENSG00000106290;ENSG00000221838 UTR3 Human other chr7:99704786 chr7:99704796 . . 0 31 hm5C_associated_SNPs_7429 0 0 0 0 0 unknown 1 0.500231530811568 1 0.999536938376863 hm5C_site_10118 DeepMRMD:1;iRNA_m5C:0.999536938376863 10119 chr7 99704796 99704796 1 + A T rs13309 99704787 + 99704767 99704807 41 AGCAATCTACAACTTCCTTCCGCTTAGCGAGCATGCATGTG AGCAATCTACAACTTCCTTCCGCTTAGCGTGCATGCATGTG < 41bp 1 0.174622649732009 1 0.163175523281097 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP4M1;TAF6 ENSG00000106290;ENSG00000221838 UTR3 Human other chr7:99704787 chr7:99704796 . . 0 30 hm5C_associated_SNPs_7430 0 0 0 0 0 unknown 1 0.500251030003912 1 0.999497939992176 hm5C_site_10119 DeepMRMD:1;iRNA_m5C:0.999497939992176 10120 chr7 99704796 99704796 1 + A T rs13309 99704789 + 99704769 99704809 41 CAATCTACAACTTCCTTCCGCTTAGCGAGCATGCATGTGTG CAATCTACAACTTCCTTCCGCTTAGCGTGCATGCATGTGTG < 41bp 1 0.179815142907597 1 0.101396441459656 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP4M1;TAF6 ENSG00000106290;ENSG00000221838 UTR3 Human other chr7:99704789 chr7:99704796 . . 0 28 hm5C_associated_SNPs_7431 0 0 0 0 0 unknown 1 0.500232170195333 1 0.999535659609333 hm5C_site_10120 DeepMRMD:1;iRNA_m5C:0.999535659609333 10121 chr7 99704796 99704796 1 + A T rs13309 99704794 + 99704774 99704814 41 TACAACTTCCTTCCGCTTAGCGAGCATGCATGTGTGTACGT TACAACTTCCTTCCGCTTAGCGTGCATGCATGTGTGTACGT < 41bp 1 0.329877002403572 1 0.122427582740784 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP4M1;TAF6 ENSG00000106290;ENSG00000221838 UTR3 Human other chr7:99704794 chr7:99704796 . . 0 23 hm5C_associated_SNPs_7432 0 0 0 0 0 unknown 1 0.500231643920719 1 0.999536712158561 hm5C_site_10121 DeepMRMD:1;iRNA_m5C:0.999536712158561 10122 chr7 99704796 99704796 1 + A T rs13309 99704798 + 99704778 99704818 41 ACTTCCTTCCGCTTAGCGAGCATGCATGTGTGTACGTGCAC ACTTCCTTCCGCTTAGCGTGCATGCATGTGTGTACGTGCAC < 41bp 1 0.372243942459047 1 0.0331133306026459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP4M1;TAF6 ENSG00000106290;ENSG00000221838 UTR3 Human other chr7:99704798 chr7:99704796 . . 0 19 hm5C_associated_SNPs_7433 0 0 0 0 0 unknown 1 0.500231652230946 1 0.999536695538108 hm5C_site_10122 DeepMRMD:1;iRNA_m5C:0.999536695538108 10123 chr7 99704796 99704796 1 + A T rs13309 99704802 + 99704782 99704822 41 CCTTCCGCTTAGCGAGCATGCATGTGTGTACGTGCACGTGT CCTTCCGCTTAGCGTGCATGCATGTGTGTACGTGCACGTGT < 41bp 1 0.647093144405432 1 0.10925704240799 experiment 0.705813711189135 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP4M1;TAF6 ENSG00000106290;ENSG00000221838 UTR3 Human other chr7:99704802 chr7:99704796 . . 0 15 hm5C_associated_SNPs_7434 0 0 0 0 0 unknown 1 0.500228695769509 1 0.999542608460983 hm5C_site_10123 DeepMRMD:1;iRNA_m5C:0.999542608460983 10124 chr7 99725168 99725168 1 + G A rs375363658 99725178 + 99725158 99725198 41 TCCTACCCCAGACCCGGGGCCCGGCCTCCAGCCACCGAGAG TCCTACCCCAAACCCGGGGCCCGGCCTCCAGCCACCGAGAG < 41bp 1 0.371537606241688 1 0.4498091340065 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MBLAC1 ENSG00000214309 CDS Human protein_coding chr7:99725178 chr7:99725168 synonymous SNV . 0 11 hm5C_associated_SNPs_7435 0 0 1 0 0 chromatin 1 0.500231643927405 1 0.99953671214519 hm5C_site_10124 DeepMRMD:1;iRNA_m5C:0.99953671214519 10125 chr7 99747130 99747130 1 + G A rs12878 99747129 + 99747109 99747149 41 CTTTACCCACTAGACTTCTGCGCTGACCCAGGGGCTGGAGC CTTTACCCACTAGACTTCTGCACTGACCCAGGGGCTGGAGC < 41bp 1 0.256856946398949 1 0.0466145277023315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99747129 chr7:99747130 synonymous SNV . 0 22 hm5C_associated_SNPs_7436 0 0 1 0 2 Cytosol 1 0.500231643923924 1 0.999536712152153 hm5C_site_10125 DeepMRMD:1;iRNA_m5C:0.999536712152153 10126 chr7 99751521 99751521 1 + G A rs11540426 99751531 + 99751511 99751551 41 TGCTGGTGACGGTGTCAGGACAGAGGGTGTTTGTGGTGAAG TGCTGGTGACAGTGTCAGGACAGAGGGTGTTTGTGGTGAAG < 41bp 1 0.643947043935416 1 0.485243827104568 experiment 0.712105912129168 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751531 chr7:99751521 synonymous SNV . 0 11 hm5C_associated_SNPs_7437 0 0 1 0 1 Cytosol 1 0.500231643916318 1 0.999536712167364 hm5C_site_10126 DeepMRMD:1;iRNA_m5C:0.999536712167364 10127 chr7 99817958 99817958 1 + A G rs556607862 99817947 + 99817927 99817967 41 TCGCCAGGCCCGCTGGGAAACCCAGAGCAGCATCTCTCTCA TCGCCAGGCCCGCTGGGAAACCCAGAGCAGCGTCTCTCTCA < 41bp 1 0.487035949741842 1 0.0561713576316833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PVRIG ENSG00000213413 CDS Human protein_coding chr7:99817947 chr7:99817958 nonsynonymous SNV 0.001 0 32 hm5C_associated_SNPs_7439 0 0 0 0 0 exosome 1 0.500231644476114 1 0.999536711047772 hm5C_site_10127 DeepMRMD:1;iRNA_m5C:0.999536711047772 10128 chr7 100027674 100027674 1 + T C rs193002939 100027658 + 100027638 100027678 41 GGAAATGATCGAGATGGCGGCGGAGAAGGAGCCGTTTCTGG GGAAATGATCGAGATGGCGGCGGAGAAGGAGCCGTTCCTGG < 41bp 1 0.691951557295314 1 0.825570583343506 experiment 0.616096885409373 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MEPCE ENSG00000146834 CDS Human protein_coding chr7:100027658 chr7:100027674 synonymous SNV . 0 37 hm5C_associated_SNPs_7440 0 0 1 0 0 chromatin 1 0.500231643921092 0.348858833312988 0.999536712157815 hm5C_site_10128 DeepMRMD:0.348858833312988;iRNA_m5C:0.999536712157815 10129 chr7 100027674 100027674 1 + T C rs193002939 100027693 + 100027673 100027713 41 TTCTGGTGCCGGCCCCGCCGCCGCCGCTCAAAGATGAGTCG TCCTGGTGCCGGCCCCGCCGCCGCCGCTCAAAGATGAGTCG < 41bp 1 0.262334077546107 1 0.39101630449295 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MEPCE ENSG00000146834 CDS Human protein_coding chr7:100027693 chr7:100027674 synonymous SNV . 0 2 hm5C_associated_SNPs_7441 0 0 1 0 0 chromatin 1 0.500231643921084 1 0.999536712157832 hm5C_site_10129 DeepMRMD:1;iRNA_m5C:0.999536712157832 10130 chr7 100027688 100027688 1 + C G rs199973116 100027693 + 100027673 100027713 41 TTCTGGTGCCGGCCCCGCCGCCGCCGCTCAAAGATGAGTCG TTCTGGTGCCGGCCCGGCCGCCGCCGCTCAAAGATGAGTCG < 41bp 1 0.286740420319303 1 0.322893083095551 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MEPCE ENSG00000146834 CDS Human protein_coding chr7:100027693 chr7:100027688 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_7442 0 0 1 0 0 chromatin 1 0.50023164392109 1 0.999536712157819 hm5C_site_10130 DeepMRMD:1;iRNA_m5C:0.999536712157819 10131 chr7 100151719 100151719 1 + G A rs61742738 100151721 + 100151701 100151741 41 TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCACGCTCGGAC TCCTTCTCCTCCAAGCCCATCAGTCAGTCTCACGCTCGGAC < 41bp 1 0.0575716914979123 1 0.107847929000854 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100151721 chr7:100151719 nonsynonymous SNV 0.039 0 19 hm5C_associated_SNPs_7443 0 0 1 0 1 chromatin 1 0.500231643770541 1 0.999536712458919 hm5C_site_10131 DeepMRMD:1;iRNA_m5C:0.999536712458919 10132 chr7 100200130 100200130 1 + C G rs140507217 100200134 + 100200114 100200154 41 CCCTCCTCACTGCCTGCGCCCTGCTGCCTTTTGCCCAGGGC CCCTCCTCACTGCCTGGGCCCTGCTGCCTTTTGCCCAGGGC < 41bp 1 0.262702583479263 1 0.123445093631744 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100200134 chr7:100200130 nonsynonymous SNV 0.979 0 17 hm5C_associated_SNPs_7444 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164392109 1 0.999536712157821 hm5C_site_10132 DeepMRMD:1;iRNA_m5C:0.999536712157821 10133 chr7 100276503 100276503 1 + G A rs145589084 100276515 + 100276495 100276535 41 GGGCTGGCGCAATCCCAGCCCCCTTCCCCGGGCCACGGGGC GGGCTGGCACAATCCCAGCCCCCTTCCCCGGGCCACGGGGC < 41bp 1 0.102959407341711 1 0.0700391829013824 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNB2 ENSG00000172354 UTR3 Human protein_coding chr7:100276515 chr7:100276503 . . 0 9 hm5C_associated_SNPs_7445 0 0 1 0 0 Cytosol 1 0.500231643920993 1 0.999536712158015 hm5C_site_10133 DeepMRMD:1;iRNA_m5C:0.999536712158015 10134 chr7 100276503 100276503 1 + G A rs145589084 100276516 + 100276496 100276536 41 GGCTGGCGCAATCCCAGCCCCCTTCCCCGGGCCACGGGGCC GGCTGGCACAATCCCAGCCCCCTTCCCCGGGCCACGGGGCC < 41bp 1 0.0278408811033776 1 0.0752622485160828 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNB2 ENSG00000172354 UTR3 Human protein_coding chr7:100276516 chr7:100276503 . . 0 8 hm5C_associated_SNPs_7446 0 0 1 0 0 Cytosol 1 0.500231643920679 1 0.999536712158642 hm5C_site_10134 DeepMRMD:1;iRNA_m5C:0.999536712158642 10135 chr7 100276523 100276523 1 + C T rs371175419 100276515 + 100276495 100276535 41 GGGCTGGCGCAATCCCAGCCCCCTTCCCCGGGCCACGGGGC GGGCTGGCGCAATCCCAGCCCCCTTCCCTGGGCCACGGGGC < 41bp 1 0.126800849687046 1 0.179474145174026 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNB2 ENSG00000172354 UTR3 Human protein_coding chr7:100276515 chr7:100276523 . . 0 29 hm5C_associated_SNPs_7449 0 0 1 0 0 Cytosol 1 0.500231643921246 1 0.999536712157508 hm5C_site_10135 DeepMRMD:1;iRNA_m5C:0.999536712157508 10136 chr7 100276523 100276523 1 + C T rs371175419 100276516 + 100276496 100276536 41 GGCTGGCGCAATCCCAGCCCCCTTCCCCGGGCCACGGGGCC GGCTGGCGCAATCCCAGCCCCCTTCCCTGGGCCACGGGGCC < 41bp 1 0.0277730641471255 1 0.128532528877258 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNB2 ENSG00000172354 UTR3 Human protein_coding chr7:100276516 chr7:100276523 . . 0 28 hm5C_associated_SNPs_7450 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10136 DeepMRMD:1;iRNA_m5C:0.999536712157815 10137 chr7 100276523 100276523 1 + C T rs371175419 100276520 + 100276500 100276540 41 GGCGCAATCCCAGCCCCCTTCCCCGGGCCACGGGGCCTTGG GGCGCAATCCCAGCCCCCTTCCCTGGGCCACGGGGCCTTGG < 41bp 1 0.560997994042199 1 0.260633707046509 experiment 0.878004011915601 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNB2 ENSG00000172354 UTR3 Human protein_coding chr7:100276520 chr7:100276523 . . 0 24 hm5C_associated_SNPs_7451 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10137 DeepMRMD:1;iRNA_m5C:0.999536712157815 10138 chr7 100303792 100303792 1 + T C rs148149252 100303809 + 100303789 100303829 41 AGCTGGCTGGCTGCTTGCACCCACATCCTTCTTTCTCTGGG AGCCGGCTGGCTGCTTGCACCCACATCCTTCTTTCTCTGGG < 41bp 1 0.373478045739601 1 0.0654452741146088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POP7 ENSG00000172336 UTR5 Human protein_coding chr7:100303809 chr7:100303792 . . 0 4 hm5C_associated_SNPs_7452 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_10138 DeepMRMD:1;iRNA_m5C:0.999536712157815 10139 chr7 100303796 100303796 1 + T C rs182037615 100303809 + 100303789 100303829 41 AGCTGGCTGGCTGCTTGCACCCACATCCTTCTTTCTCTGGG AGCTGGCCGGCTGCTTGCACCCACATCCTTCTTTCTCTGGG < 41bp 1 0.344062497127472 1 0.131340175867081 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POP7 ENSG00000172336 UTR5 Human protein_coding chr7:100303809 chr7:100303796 . . 0 8 hm5C_associated_SNPs_7453 0 0 1 0 0 Cytosol 1 0.50023164390017 1 0.99953671219966 hm5C_site_10139 DeepMRMD:1;iRNA_m5C:0.99953671219966 10140 chr7 100303796 100303796 1 + T C rs182037615 100303815 + 100303795 100303835 41 CTGGCTGCTTGCACCCACATCCTTCTTTCTCTGGGACCTGG CCGGCTGCTTGCACCCACATCCTTCTTTCTCTGGGACCTGG < 41bp 1 0.0587939158448288 1 0.0281419456005096 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POP7 ENSG00000172336 UTR5 Human protein_coding chr7:100303815 chr7:100303796 . . 0 2 hm5C_associated_SNPs_7454 0 0 1 0 0 Cytosol 1 0.500231643921088 1 0.999536712157824 hm5C_site_10140 DeepMRMD:1;iRNA_m5C:0.999536712157824 10141 chr7 100303809 100303809 1 + C T rs78597009 100303815 + 100303795 100303835 41 CTGGCTGCTTGCACCCACATCCTTCTTTCTCTGGGACCTGG CTGGCTGCTTGCACTCACATCCTTCTTTCTCTGGGACCTGG < 41bp 1 0.0523184708460182 1 0.0245530009269714 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POP7 ENSG00000172336 UTR5 Human protein_coding chr7:100303815 chr7:100303809 . . 0 15 hm5C_associated_SNPs_7455 0 0 1 0 0 Cytosol 1 0.500231643897258 1 0.999536712205485 hm5C_site_10141 DeepMRMD:1;iRNA_m5C:0.999536712205485 10142 chr7 100334903 100334903 1 + C T rs114183970 100334885 + 100334865 100334905 41 GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACACGG GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACATGG < 41bp 1 0.16986167893911 1 0.064841240644455 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZAN ENSG00000146839 CDS Human protein_coding chr7:100334885 chr7:100334903 nonsynonymous SNV 0.426 0 39 hm5C_associated_SNPs_7456 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10142 DeepMRMD:1;iRNA_m5C:0.999536712157815 10143 chr7 100454700 100454700 1 + G A rs150811167 100454688 + 100454668 100454708 41 CAGTTTTGTGGCTGTGGGGCCGAGGGACATCCGCTTGACTC CAGTTTTGTGGCTGTGGGGCCGAGGGACATCCACTTGACTC < 41bp 1 0.624834232010153 1 0.786941766738892 experiment 0.750331535979695 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC12A9 ENSG00000146828 CDS Human protein_coding chr7:100454688 chr7:100454700 nonsynonymous SNV 0.016 1 33 hm5C_associated_SNPs_7457 0 0 0 0 0 Cytosol 1 0.500238096998267 0.426116466522216 0.999523806003465 hm5C_site_10143 DeepMRMD:0.426116466522216;iRNA_m5C:0.999523806003465 10144 chr7 100454700 100454700 1 + G A rs150811167 100454701 + 100454681 100454721 41 GTGGGGCCGAGGGACATCCGCTTGACTCCTAGGCCTGGCCC GTGGGGCCGAGGGACATCCACTTGACTCCTAGGCCTGGCCC < 41bp 1 0.699694013374508 1 0.512741327285767 experiment 0.600611973250985 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC12A9 ENSG00000146828 CDS Human protein_coding chr7:100454701 chr7:100454700 nonsynonymous SNV 0.016 1 20 hm5C_associated_SNPs_7458 0 0 0 0 0 Cytosol 1 0.500231643921092 0.974517345428466 0.999536712157815 hm5C_site_10144 DeepMRMD:0.974517345428466;iRNA_m5C:0.999536712157815 10145 chr7 100484529 100484529 1 + G A rs572548566 100484519 + 100484499 100484539 41 GGGGAGCAGCGGGGGCGCTCCTCCTGAGGAGCCTCCTAAGG GGGGAGCAGCGGGGGCGCTCCTCCTGAGGAACCTCCTAAGG < 41bp 1 0.69802735373511 1 0.777493357658386 experiment 0.603945292529779 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100484519 chr7:100484529 synonymous SNV . 0 31 hm5C_associated_SNPs_7459 0 0 1 0 1 Nucleus 1 0.500231643921078 0.445013284683228 0.999536712157845 hm5C_site_10145 DeepMRMD:0.445013284683228;iRNA_m5C:0.999536712157845 10146 chr7 100731184 100731184 1 + C T rs36064566 100731170 + 100731150 100731190 41 AGTTGCTGTGCAGAGAGTGCCGCCTAGACCCCCACCTGGAC AGTTGCTGTGCAGAGAGTGCCGCCTAGACCCCCATCTGGAC < 41bp 1 0.485599176223208 1 0.15083909034729 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100731170 chr7:100731184 synonymous SNV . 0 35 hm5C_associated_SNPs_7460 0 0 1 0 0 nucleus 1 0.5002316452199 1 0.999536709560201 hm5C_site_10146 DeepMRMD:1;iRNA_m5C:0.999536709560201 10147 chr7 100731321 100731321 1 + G A rs371843986 100731332 + 100731312 100731352 41 CGCTAGCCCGGCTGCGGGAGCAGGCGGCCCGGGTGGGGACT CGCTAGCCCAGCTGCGGGAGCAGGCGGCCCGGGTGGGGACT < 41bp 1 0.641602506492997 1 0.898771524429321 experiment 0.716794987014006 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100731332 chr7:100731321 nonsynonymous SNV 0.037 0 10 hm5C_associated_SNPs_7461 0 0 1 0 1 nucleus 1 0.500231643921092 0.202456951141358 0.999536712157816 hm5C_site_10147 DeepMRMD:0.202456951141358;iRNA_m5C:0.999536712157816 10148 chr7 100733565 100733565 1 + A G rs10900 100733585 + 100733565 100733605 41 ATTCTCCATCGCTTCTCAGCCTTTTGGCTAAGATTAAGTAT GTTCTCCATCGCTTCTCAGCCTTTTGGCTAAGATTAAGTAT < 41bp 1 0.0639030953428266 1 0.0624144375324249 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM56 ENSG00000169871 UTR3 Human protein_coding chr7:100733585 chr7:100733565 . . 0 1 hm5C_associated_SNPs_7462 0 0 1 0 0 nucleus 1 0.500231626085268 1 0.999536747829465 hm5C_site_10148 DeepMRMD:1;iRNA_m5C:0.999536747829465 10149 chr7 100733574 100733574 1 + C T rs113753117 100733585 + 100733565 100733605 41 ATTCTCCATCGCTTCTCAGCCTTTTGGCTAAGATTAAGTAT ATTCTCCATTGCTTCTCAGCCTTTTGGCTAAGATTAAGTAT < 41bp 1 0.0701389944961299 1 0.0392843186855316 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM56 ENSG00000169871 UTR3 Human protein_coding chr7:100733585 chr7:100733574 . . 0 10 hm5C_associated_SNPs_7463 0 0 1 0 0 nucleus 1 0.500231643921137 1 0.999536712157726 hm5C_site_10149 DeepMRMD:1;iRNA_m5C:0.999536712157726 10150 chr7 100733586 100733586 1 + T C rs551080112 100733585 + 100733565 100733605 41 ATTCTCCATCGCTTCTCAGCCTTTTGGCTAAGATTAAGTAT ATTCTCCATCGCTTCTCAGCCCTTTGGCTAAGATTAAGTAT < 41bp 1 0.0309763550269251 1 0.0755956172943115 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM56 ENSG00000169871 UTR3 Human protein_coding chr7:100733585 chr7:100733586 . . 0 22 hm5C_associated_SNPs_7464 0 0 0 0 0 nucleus 1 0.500230604895632 1 0.999538790208736 hm5C_site_10150 DeepMRMD:1;iRNA_m5C:0.999538790208736 10151 chr7 100733598 100733598 1 + T A rs75413959 100733585 + 100733565 100733605 41 ATTCTCCATCGCTTCTCAGCCTTTTGGCTAAGATTAAGTAT ATTCTCCATCGCTTCTCAGCCTTTTGGCTAAGAATAAGTAT < 41bp 1 0.062976162539649 1 0.0768643319606781 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM56 ENSG00000169871 UTR3 Human protein_coding chr7:100733585 chr7:100733598 . . 0 34 hm5C_associated_SNPs_7465 0 0 0 0 0 nucleus 1 0.500231643921075 1 0.99953671215785 hm5C_site_10151 DeepMRMD:1;iRNA_m5C:0.99953671215785 10152 chr7 100775153 100775153 1 + T C rs201697541 100775149 + 100775129 100775169 41 TCTTCCTGATCATTGATTTTCCCATAGGTATGATCAGCAAC TCTTCCTGATCATTGATTTTCCCACAGGTATGATCAGCAAC < 41bp 1 0.227936682104416 1 0.167938679456711 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 intronic Human protein_coding chr7:100775149 chr7:100775153 . . 0 25 hm5C_associated_SNPs_7466 0 0 1 0 0 Ribosome 1 0.500231643926949 1 0.999536712146102 hm5C_site_10152 DeepMRMD:1;iRNA_m5C:0.999536712146102 10153 chr7 100775153 100775153 1 + T C rs201697541 100775150 + 100775130 100775170 41 CTTCCTGATCATTGATTTTCCCATAGGTATGATCAGCAACT CTTCCTGATCATTGATTTTCCCACAGGTATGATCAGCAACT < 41bp 1 0.335712963604803 1 0.0526244342327118 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 intronic Human protein_coding chr7:100775150 chr7:100775153 . . 0 24 hm5C_associated_SNPs_7467 0 0 1 0 0 Ribosome 1 0.500231643751573 1 0.999536712496853 hm5C_site_10153 DeepMRMD:1;iRNA_m5C:0.999536712496853 10154 chr7 100775298 100775298 1 + C T rs2227670 100775301 + 100775281 100775321 41 CTCTTCCACAAATCAGACGGCAGCACTGTCTCTGTGCCCAT CTCTTCCACAAATCAGATGGCAGCACTGTCTCTGTGCCCAT < 41bp 1 0.55394758545135 1 0.168195784091949 experiment 0.892104829097299 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100775301 chr7:100775298 synonymous SNV . 0 18 hm5C_associated_SNPs_7468 0 0 1 0 1 Ribosome 1 0.500231643351998 1 0.999536713296004 hm5C_site_10154 DeepMRMD:1;iRNA_m5C:0.999536713296004 10155 chr7 100803900 100803900 1 + G T rs570283203 100803910 + 100803890 100803930 41 GGCGGGAACGGCTGCTTCTCCTCTGCCCAGGGCCCTGTTCT GGCGGGAACGTCTGCTTCTCCTCTGCCCAGGGCCCTGTTCT < 41bp 1 0.645987831784576 1 0.636633038520813 experiment 0.708024336430848 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP1S1 ENSG00000106367 UTR3 Human protein_coding chr7:100803910 chr7:100803900 . . 0 11 hm5C_associated_SNPs_7469 0 0 1 0 0 Ribosome 1 0.500231643922136 0.726733922958374 0.999536712155728 hm5C_site_10155 DeepMRMD:0.726733922958374;iRNA_m5C:0.999536712155728 10156 chr7 100861475 100861475 1 + C T rs10215517 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCTAATGGTGGAGAAGAAAACT < 41bp 1 0.217668319544084 1 0.126967191696167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861474 chr7:100861475 . . 0 22 hm5C_associated_SNPs_7471 0 0 1 4 1 Cytosol 1 0.500231643870198 1 0.999536712259604 hm5C_site_10156 DeepMRMD:1;iRNA_m5C:0.999536712259604 10157 chr7 100861476 100861476 1 + A G rs58033606 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCCGATGGTGGAGAAGAAAACT < 41bp 1 0.176258731468288 1 0.360364556312561 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861474 chr7:100861476 . . 0 23 hm5C_associated_SNPs_7472 0 0 1 4 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10157 DeepMRMD:1;iRNA_m5C:0.999536712157815 10158 chr7 100861476 100861476 1 + A G rs58033606 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCCGATGGTGGAGAAGAAAACTT < 41bp 1 0.494776661053751 1 0.710920035839081 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 UTR5 Human protein_coding chr7:100861475 chr7:100861476 . . 0 22 hm5C_associated_SNPs_7473 0 0 1 4 1 Cytosol 1 0.500231656036969 0.578159928321838 0.999536687926063 hm5C_site_10158 DeepMRMD:0.578159928321838;iRNA_m5C:0.999536687926063 10159 chr7 100867227 100867227 1 + G A rs142188467 100867232 + 100867212 100867252 41 CTGCAGGTGTCTGAAGTGGACTGTGTGAGCCTGGGCATTCC CTGCAGGTGTCTGAAATGGACTGTGTGAGCCTGGGCATTCC < 41bp 1 0.666574194341048 1 0.101806789636612 experiment 0.666851611317903 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867232 chr7:100867227 synonymous SNV . 0 16 hm5C_associated_SNPs_7474 0 0 1 0 1 Cytosol 1 0.500231643917897 1 0.999536712164206 hm5C_site_10159 DeepMRMD:1;iRNA_m5C:0.999536712164206 10160 chr7 100867240 100867240 1 + G A rs144254789 100867232 + 100867212 100867252 41 CTGCAGGTGTCTGAAGTGGACTGTGTGAGCCTGGGCATTCC CTGCAGGTGTCTGAAGTGGACTGTGTGAACCTGGGCATTCC < 41bp 1 0.671890950387505 1 0.113946288824081 experiment 0.65621809922499 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 UTR3 Human protein_coding chr7:100867232 chr7:100867240 . . 0 29 hm5C_associated_SNPs_7476 0 0 1 2 1 Cytosol 1 0.500231643804885 1 0.99953671239023 hm5C_site_10160 DeepMRMD:1;iRNA_m5C:0.99953671239023 10161 chr7 101813775 101813775 1 + C T rs189334175 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GCTCTTATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA < 41bp 1 0.0560719841144257 1 0.74062180519104 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813775 nonsynonymous SNV 0.992 1 6 hm5C_associated_SNPs_7477 0 0 1 0 2 Exosome 1 0.500231398343774 0.51875638961792 0.999537203312453 hm5C_site_10161 DeepMRMD:0.51875638961792;iRNA_m5C:0.999537203312453 10162 chr7 101813779 101813779 1 + G A rs180828525 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GCTCTCATCAGCCAATCACTCCCTCCAGCTGGCCTCACAGA < 41bp 1 0.043123755460874 1 0.524882555007935 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813779 synonymous SNV . 0 10 hm5C_associated_SNPs_7478 0 0 1 0 2 Exosome 1 0.500231923094321 0.95023488998413 0.999536153811359 hm5C_site_10162 DeepMRMD:0.95023488998413;iRNA_m5C:0.999536153811359 10163 chr7 101837149 101837149 1 + G A rs2230104 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCATCCGAGGGCGCTGGGACA < 41bp 1 0.0114249808120915 1 0.213053971529007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837149 synonymous SNV . 0 23 hm5C_associated_SNPs_7479 0 0 1 0 2 Exosome 1 0.500231643920949 1 0.999536712158102 hm5C_site_10163 DeepMRMD:1;iRNA_m5C:0.999536712158102 10164 chr7 101837149 101837149 1 + G A rs2230104 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCATCCGAGGGCGCTGGGACAC < 41bp 1 0.0678461133369814 1 0.359058737754822 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837149 synonymous SNV . 0 22 hm5C_associated_SNPs_7480 0 0 1 0 2 Exosome 1 0.500231613225091 1 0.999536773549818 hm5C_site_10164 DeepMRMD:1;iRNA_m5C:0.999536773549818 10165 chr7 101845115 101845115 1 + G A rs115507543 101845118 + 101845098 101845138 41 GCCAAGGCCGAAGAAACGGGCGGCGGGAAAGAGAAGGGCAG GCCAAGGCCGAAGAAACAGGCGGCGGGAAAGAGAAGGGCAG < 41bp 1 0.440843909687568 1 0.705779671669006 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101845118 chr7:101845115 synonymous SNV . 0 18 hm5C_associated_SNPs_7481 0 0 1 0 0 Exosome 1 0.500231643921092 0.588440656661988 0.999536712157815 hm5C_site_10165 DeepMRMD:0.588440656661988;iRNA_m5C:0.999536712157815 10166 chr7 101845119 101845119 1 + G A rs369468371 101845118 + 101845098 101845138 41 GCCAAGGCCGAAGAAACGGGCGGCGGGAAAGAGAAGGGCAG GCCAAGGCCGAAGAAACGGGCAGCGGGAAAGAGAAGGGCAG < 41bp 1 0.309146773020972 1 0.605080008506775 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101845118 chr7:101845119 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_7482 0 0 1 0 0 Exosome 1 0.500231643921092 0.78983998298645 0.999536712157815 hm5C_site_10166 DeepMRMD:0.78983998298645;iRNA_m5C:0.999536712157815 10167 chr7 101897521 101897521 1 + A G rs10259347 101897533 + 101897513 101897553 41 TTCTGTCCAGTCCTGCTCAGCTGTTAAGATCCATCATGGCC TTCTGTCCGGTCCTGCTCAGCTGTTAAGATCCATCATGGCC < 41bp 1 0.0575483191929547 1 0.082267552614212 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUX1 ENSG00000257923 UTR3 Human protein_coding chr7:101897533 chr7:101897521 . . 0 9 hm5C_associated_SNPs_7483 0 0 1 0 0 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10167 DeepMRMD:1;iRNA_m5C:0.999536712157815 10168 chr7 101916647 101916647 1 + A G rs813000 101916646 + 101916626 101916666 41 TTTGGCCACAGGACGCTGTGCAGAGCTGCAAGTCCGTATCA TTTGGCCACAGGACGCTGTGCGGAGCTGCAAGTCCGTATCA < 41bp 1 0.401715294445337 1 0.657349109649658 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101916646 chr7:101916647 synonymous SNV . 0 22 hm5C_associated_SNPs_7484 0 0 0 0 1 Exosome 1 0.500231929875635 0.685301780700684 0.99953614024873 hm5C_site_10168 DeepMRMD:0.685301780700684;iRNA_m5C:0.99953614024873 10169 chr7 101961830 101961830 1 + G A rs551876946 101961815 + 101961795 101961835 41 GCGTCCCCGGCCTGCTGGAGCGACTCGCCCGGCCAGCACTA GCGTCCCCGGCCTGCTGGAGCGACTCGCCCGGCCAACACTA < 41bp 1 0.492036216855681 1 0.136294335126877 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101961815 chr7:101961830 synonymous SNV . 0 36 hm5C_associated_SNPs_7485 0 0 0 0 1 nucleoplasm 1 0.500231643969419 1 0.999536712061163 hm5C_site_10169 DeepMRMD:1;iRNA_m5C:0.999536712061163 10170 chr7 102066873 102066873 1 + T C rs11444 102066878 + 102066858 102066898 41 CCTGAGTCTATTTTATGCCCCTTACGTACTTTGATAGAACT CCTGAGTCTATTTTACGCCCCTTACGTACTTTGATAGAACT < 41bp 1 0.050910605991871 1 0.0389951169490814 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOC100630923 ENSG00000128563 UTR3 Human protein_coding chr7:102066878 chr7:102066873 . . 0 16 hm5C_associated_SNPs_7486 0 0 1 0 0 unknown 1 0.50023164389138 1 0.999536712217241 hm5C_site_10170 DeepMRMD:1;iRNA_m5C:0.999536712217241 10171 chr7 102739819 102739819 1 + G A rs538218538 102739801 + 102739781 102739821 41 GGTGGTGCATGCCTGTAATCCCAGCTACTTGGGAGGCCGAG GGTGGTGCATGCCTGTAATCCCAGCTACTTGGGAGGCCAAG < 41bp 1 0.484236103584386 1 0.578796148300171 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARMC10 ENSG00000170632 UTR3 Human protein_coding chr7:102739801 chr7:102739819 . . 0 39 hm5C_associated_SNPs_7487 0 0 0 0 0 Ribosome 1 0.499562410567967 0.842407703399658 1 hm5C_site_10171 DeepMRMD:0.842407703399658;iRNA_m5C:1 10172 chr7 102944359 102944359 1 + A T rs149065163 102944354 + 102944334 102944374 41 AAGCAGAGATTGAACGTGAGCGTGGAGTAATCCTTAGAGAG AAGCAGAGATTGAACGTGAGCGTGGTGTAATCCTTAGAGAG < 41bp 1 0.627831870603633 1 0.545337080955505 experiment 0.744336258792734 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PMPCB ENSG00000105819 CDS Human protein_coding chr7:102944354 chr7:102944359 synonymous SNV . 0 26 hm5C_associated_SNPs_7488 0 0 1 0 1 Ribosome 1 0.500231643885974 0.90932583808899 0.999536712228053 hm5C_site_10172 DeepMRMD:0.90932583808899;iRNA_m5C:0.999536712228053 10173 chr7 103008462 103008462 1 + C G rs200390723 103008447 + 103008427 103008467 41 TTGGAAGCTGTAAATAAGGTCATTAAGTCTTATGCCAAATT TTGGAAGCTGTAAATAAGGTCATTAAGTCTTATGCGAAATT < 41bp 1 0.160926060112369 1 0.00841262936592102 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103008447 chr7:103008462 synonymous SNV . 0 36 hm5C_associated_SNPs_7489 0 0 1 0 0 Ribosome 1 0.500232061339959 1 0.999535877320081 hm5C_site_10173 DeepMRMD:1;iRNA_m5C:0.999535877320081 10174 chr7 106791447 106791447 1 + G A rs3729878 106791445 + 106791425 106791465 41 ATGAAAGCTTTATTGAGTCACTGCCATTCCTTAAATCTTTG ATGAAAGCTTTATTGAGTCACTACCATTCCTTAAATCTTTG < 41bp 1 0.113062112486746 1 0.0503162741661072 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106791445 chr7:106791447 synonymous SNV . 0 23 hm5C_associated_SNPs_7490 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10174 DeepMRMD:1;iRNA_m5C:0.999536712157815 10175 chr7 107260778 107260778 1 + G A rs2807 107260777 + 107260757 107260797 41 AAATATTGCAGTGTATTAGCCGGCTGTGGCTCCAGAGTCTG AAATATTGCAGTGTATTAGCCAGCTGTGGCTCCAGAGTCTG < 41bp 1 0.653764710694895 1 0.308243483304977 experiment 0.692470578610209 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAP29 ENSG00000075790 UTR3 Human protein_coding chr7:107260777 chr7:107260778 . . 0 22 hm5C_associated_SNPs_7491 0 0 1 0 0 Ribosome 1 0.500231640150018 1 0.999536719699964 hm5C_site_10175 DeepMRMD:1;iRNA_m5C:0.999536719699964 10176 chr7 107357688 107357688 1 + G C rs76820337 107357694 + 107357674 107357714 41 GCTGGCGGGCGCCTGTAGTCCCAGCTATTTGGGAGGCTAAG GCTGGCGGGCGCCTCTAGTCCCAGCTATTTGGGAGGCTAAG < 41bp 1 0.456343559800065 1 0.434646219015121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC26A4 ENSG00000091137 UTR3 Human protein_coding chr7:107357694 chr7:107357688 . . 0 15 hm5C_associated_SNPs_7492 2 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_10176 DeepMRMD:1;iRNA_m5C:0.999536712157814 Pendred's syndrome Pendred's syndrome 10177 chr7 107357688 107357688 1 + G C rs76820337 107357698 + 107357678 107357718 41 GCGGGCGCCTGTAGTCCCAGCTATTTGGGAGGCTAAGGCAG GCGGGCGCCTCTAGTCCCAGCTATTTGGGAGGCTAAGGCAG < 41bp 1 0.383421267544581 1 0.219679236412048 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC26A4 ENSG00000091137 UTR3 Human protein_coding chr7:107357698 chr7:107357688 . . 0 11 hm5C_associated_SNPs_7494 2 0 0 0 0 Nucleus 1 0.500231643921097 1 0.999536712157806 hm5C_site_10177 DeepMRMD:1;iRNA_m5C:0.999536712157806 Pendred's syndrome Pendred's syndrome 10178 chr7 107559722 107559722 1 + A G rs8721 107559739 + 107559719 107559759 41 TATATTTTTTTCTGAAATTTCCTGGGAGCTTTTGTAGAAGT TATGTTTTTTTCTGAAATTTCCTGGGAGCTTTTGTAGAAGT < 41bp 1 0.297516871203824 1 0.424031108617783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DLD ENSG00000091140 UTR3 Human protein_coding chr7:107559739 chr7:107559722 . . 0 4 hm5C_associated_SNPs_7495 0 0 1 0 1 Cytosol 1 0.500231631943685 1 0.99953673611263 hm5C_site_10178 DeepMRMD:1;iRNA_m5C:0.99953673611263 10179 chr7 107559732 107559732 1 + G T rs17154615 107559739 + 107559719 107559759 41 TATATTTTTTTCTGAAATTTCCTGGGAGCTTTTGTAGAAGT TATATTTTTTTCTTAAATTTCCTGGGAGCTTTTGTAGAAGT < 41bp 1 0.257030507628281 1 0.349120646715164 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DLD ENSG00000091140 UTR3 Human protein_coding chr7:107559739 chr7:107559732 . . 0 14 hm5C_associated_SNPs_7496 3 0 1 0 1 Cytosol 1 0.500231643921022 1 0.999536712157955 hm5C_site_10179 DeepMRMD:1;iRNA_m5C:0.999536712157955 Leigh syndrome Leigh syndrome 10180 chr7 114655779 114655779 1 + C T rs145324284 114655776 + 114655756 114655796 41 TGTATCCTGGCTTGCTTGTTCTGCGAATTCCTGACCCTTTG TGTATCCTGGCTTGCTTGTTCTGTGAATTCCTGACCCTTTG < 41bp 1 0.586660478475986 1 0.275131940841675 experiment 0.826679043048028 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655776 chr7:114655779 synonymous SNV . 0 24 hm5C_associated_SNPs_7497 0 0 1 0 1 Cytosol 1 0.500231649034903 1 0.999536701930195 hm5C_site_10180 DeepMRMD:1;iRNA_m5C:0.999536701930195 10181 chr7 116139718 116139718 1 + T C rs3735625 116139707 + 116139687 116139727 41 CCCACAGCGGGAAGCGGCCGCCGCCCGGGCCTCGCAGGGCT CCCACAGCGGGAAGCGGCCGCCGCCCGGGCCCCGCAGGGCT < 41bp 1 0.254940585538312 1 0.495460569858551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV2 ENSG00000105971 UTR5 Human protein_coding chr7:116139707 chr7:116139718 . . 0 32 hm5C_associated_SNPs_7498 0 0 1 0 0 Ribosome 1 0.500231642409762 1 0.999536715180476 hm5C_site_10181 DeepMRMD:1;iRNA_m5C:0.999536715180476 10182 chr7 116139718 116139718 1 + T C rs3735625 116139717 + 116139697 116139737 41 GAAGCGGCCGCCGCCCGGGCCTCGCAGGGCTAGGCGAGGCG GAAGCGGCCGCCGCCCGGGCCCCGCAGGGCTAGGCGAGGCG < 41bp 1 0.251924738693762 1 0.137789815664291 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAV2 ENSG00000105971 UTR5 Human protein_coding chr7:116139717 chr7:116139718 . . 0 22 hm5C_associated_SNPs_7499 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_10182 DeepMRMD:1;iRNA_m5C:0.999536712157818 10183 chr7 116199050 116199050 1 + C T rs35242077 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGATGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT < 41bp 1 0.390488896713939 1 0.240221321582794 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199050 synonymous SNV . 0 6 hm5C_associated_SNPs_7500 0 0 0 0 1 Ribosome 1 0.500228257681431 1 0.999543484637137 hm5C_site_10183 DeepMRMD:1;iRNA_m5C:0.999543484637137 10184 chr7 116437606 116437606 1 + G A rs1621 116437607 + 116437587 116437627 41 TCTGTGGAATTTTGTGCTTGCTACTGTATAGTGCATGTGGT TCTGTGGAATTTTGTGCTTACTACTGTATAGTGCATGTGGT < 41bp 1 0.478570962049128 1 0.111973226070404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MET ENSG00000105976 UTR3 Human protein_coding chr7:116437607 chr7:116437606 . . 0 20 hm5C_associated_SNPs_7501 1 0 1 6 0 Cytosol 1 0.500229604438789 1 0.999540791122422 hm5C_site_10184 DeepMRMD:1;iRNA_m5C:0.999540791122422 Renal cell carcinoma, papillary, 1 Renal cell carcinoma, papillary, 1 10185 chr7 127569261 127569261 1 + G A rs60805384 127569246 + 127569226 127569266 41 TCTTTTCTCCATCAGGATACCCAAAAAGCAAAGCAGTTCCT TCTTTTCTCCATCAGGATACCCAAAAAGCAAAGCAATTCCT < 41bp 1 0.087320875845679 1 0.300810515880585 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127569246 chr7:127569261 synonymous SNV . 0 36 hm5C_associated_SNPs_7502 0 0 1 0 1 Cytosol 1 0.500231643919008 1 0.999536712161984 hm5C_site_10185 DeepMRMD:1;iRNA_m5C:0.999536712161984 10186 chr7 128297178 128297178 1 + G A rs555986730 128297166 + 128297146 128297186 41 CCTTGGAAGGCGTCCCTGGGCCCCCATCCCCAGGGGTAGGG CCTTGGAAGGCGTCCCTGGGCCCCCATCCCCAAGGGTAGGG < 41bp 1 0.154246278667913 1 0.0458729863166809 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LINC01000 ENSG00000271529 ncRNA_exonic Human other chr7:128297166 chr7:128297178 . . 0 33 hm5C_associated_SNPs_7503 0 0 0 0 0 unknown 1 0.500231643921116 1 0.999536712157769 hm5C_site_10186 DeepMRMD:1;iRNA_m5C:0.999536712157769 10187 chr7 128297178 128297178 1 + G A rs555986730 128297167 + 128297147 128297187 41 CTTGGAAGGCGTCCCTGGGCCCCCATCCCCAGGGGTAGGGG CTTGGAAGGCGTCCCTGGGCCCCCATCCCCAAGGGTAGGGG < 41bp 1 0.355786250091917 1 0.214213281869888 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LINC01000 ENSG00000271529 ncRNA_exonic Human other chr7:128297167 chr7:128297178 . . 0 32 hm5C_associated_SNPs_7504 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10187 DeepMRMD:1;iRNA_m5C:0.999536712157815 10188 chr7 128297178 128297178 1 + G A rs555986730 128297168 + 128297148 128297188 41 TTGGAAGGCGTCCCTGGGCCCCCATCCCCAGGGGTAGGGGC TTGGAAGGCGTCCCTGGGCCCCCATCCCCAAGGGTAGGGGC < 41bp 1 0.100144701781022 1 0.0407731831073761 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LINC01000 ENSG00000271529 ncRNA_exonic Human other chr7:128297168 chr7:128297178 . . 0 31 hm5C_associated_SNPs_7505 0 0 0 0 0 unknown 1 0.500231643922017 1 0.999536712155967 hm5C_site_10188 DeepMRMD:1;iRNA_m5C:0.999536712155967 10189 chr7 128297178 128297178 1 + G A rs555986730 128297169 + 128297149 128297189 41 TGGAAGGCGTCCCTGGGCCCCCATCCCCAGGGGTAGGGGCC TGGAAGGCGTCCCTGGGCCCCCATCCCCAAGGGTAGGGGCC < 41bp 1 0.0507496558417393 1 0.175507485866547 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LINC01000 ENSG00000271529 ncRNA_exonic Human other chr7:128297169 chr7:128297178 . . 0 30 hm5C_associated_SNPs_7506 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10189 DeepMRMD:1;iRNA_m5C:0.999536712157815 10190 chr7 128297178 128297178 1 + G A rs555986730 128297170 + 128297150 128297190 41 GGAAGGCGTCCCTGGGCCCCCATCCCCAGGGGTAGGGGCCG GGAAGGCGTCCCTGGGCCCCCATCCCCAAGGGTAGGGGCCG < 41bp 1 0.183009911517162 1 0.144626766443253 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LINC01000 ENSG00000271529 ncRNA_exonic Human other chr7:128297170 chr7:128297178 . . 0 29 hm5C_associated_SNPs_7507 0 0 0 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_10190 DeepMRMD:1;iRNA_m5C:0.999536712157815 10191 chr7 128297178 128297178 1 + G A rs555986730 128297198 + 128297178 128297218 41 GGGGTAGGGGCCGTAGGGGGCCCGCTCTGCTGCCTTGACCA AGGGTAGGGGCCGTAGGGGGCCCGCTCTGCTGCCTTGACCA < 41bp 1 0.303116827840378 1 0.0817068219184875 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LINC01000 ENSG00000271529 ncRNA_exonic Human other chr7:128297198 chr7:128297178 . . 0 1 hm5C_associated_SNPs_7508 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10191 DeepMRMD:1;iRNA_m5C:0.999536712157815 10192 chr7 128297219 128297219 1 + G C rs149543087 128297199 + 128297179 128297219 41 GGGTAGGGGCCGTAGGGGGCCCGCTCTGCTGCCTTGACCAG GGGTAGGGGCCGTAGGGGGCCCGCTCTGCTGCCTTGACCAC < 41bp 1 0.31271486493729 1 0.0749730467796326 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LINC01000 ENSG00000271529 ncRNA_exonic Human other chr7:128297199 chr7:128297219 . . 0 41 hm5C_associated_SNPs_7509 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10192 DeepMRMD:1;iRNA_m5C:0.999536712157815 10193 chr7 128423508 128423508 1 + C T rs533242301 128423506 + 128423486 128423526 41 CAAGAGATAACTACCAGTGGCTCGTTGGTCTAGGGGTATGA CAAGAGATAACTACCAGTGGCTTGTTGGTCTAGGGGTATGA < 41bp 1 0.145480115744748 1 0.0652853846549988 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OPN1SW;CCDC136 ENSG00000128617;ENSG00000128596 intergenic Human other chr7:128423506 chr7:128423508 . . 0 23 hm5C_associated_SNPs_7512 0 0 1 0 0 unknown 1 0.50023173769764 1 0.99953652460472 hm5C_site_10193 DeepMRMD:1;iRNA_m5C:0.99953652460472 10194 chr7 128423532 128423532 1 + G A rs534192385 128423542 + 128423522 128423562 41 TATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGTTCAAAT TATGATTCTCACTTAGGGTGCGAGAGGTCCCGGGTTCAAAT < 41bp 1 0.665876783604323 1 0.479126006364822 experiment 0.668246432791354 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OPN1SW;CCDC136 ENSG00000128617;ENSG00000128596 intergenic Human other chr7:128423542 chr7:128423532 . . 0 11 hm5C_associated_SNPs_7513 0 0 0 0 0 unknown 1 0.500231643685378 1 0.999536712629245 hm5C_site_10194 DeepMRMD:1;iRNA_m5C:0.999536712629245 10195 chr7 128423552 128423552 1 + C T rs147868566 128423542 + 128423522 128423562 41 TATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGTTCAAAT TATGATTCTCGCTTAGGGTGCGAGAGGTCCTGGGTTCAAAT < 41bp 1 0.629004691677339 1 0.608605921268463 experiment 0.741990616645323 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OPN1SW;CCDC136 ENSG00000128617;ENSG00000128596 intergenic Human other chr7:128423542 chr7:128423552 . . 0 31 hm5C_associated_SNPs_7515 0 0 1 0 0 unknown 1 0.500231643727905 0.782788157463074 0.99953671254419 hm5C_site_10195 DeepMRMD:0.782788157463074;iRNA_m5C:0.99953671254419 10196 chr7 128423552 128423552 1 + C T rs147868566 128423564 + 128423544 128423584 41 AGAGGTCCCGGGTTCAAATCCCGGACGAGCCCTACTTTTTC AGAGGTCCTGGGTTCAAATCCCGGACGAGCCCTACTTTTTC < 41bp 1 0.649251640431281 1 0.761685013771057 experiment 0.701496719137437 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OPN1SW;CCDC136 ENSG00000128617;ENSG00000128596 intergenic Human other chr7:128423564 chr7:128423552 . . 0 9 hm5C_associated_SNPs_7516 0 0 1 0 0 unknown 1 0.500231643921092 0.476629972457886 0.999536712157815 hm5C_site_10196 DeepMRMD:0.476629972457886;iRNA_m5C:0.999536712157815 10197 chr7 128423565 128423565 1 + C T rs148925636 128423574 + 128423554 128423594 41 GGTTCAAATCCCGGACGAGCCCTACTTTTTCTGTCCCTTCT GGTTCAAATCCTGGACGAGCCCTACTTTTTCTGTCCCTTCT < 41bp 1 0.0526993453940853 1 0.135612308979034 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control OPN1SW;CCDC136 ENSG00000128617;ENSG00000128596 intergenic Human other chr7:128423574 chr7:128423565 . . 0 12 hm5C_associated_SNPs_7517 0 0 1 0 0 unknown 1 0.500231643920883 1 0.999536712158233 hm5C_site_10197 DeepMRMD:1;iRNA_m5C:0.999536712158233 10198 chr7 128478820 128478820 1 + C T rs115140972 128478838 + 128478818 128478858 41 CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG CCTATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG < 41bp 1 0.0727797239685108 1 0.0361427962779999 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128478838 chr7:128478820 synonymous SNV . 0 3 hm5C_associated_SNPs_7518 1 0 1 0 1 chromatin 1 0.500231643920691 1 0.999536712158619 hm5C_site_10198 DeepMRMD:1;iRNA_m5C:0.999536712158619 not specified not specified 10199 chr7 128491324 128491324 1 + C T rs181067717 128491320 + 128491300 128491340 41 TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCCTA TTCTATGTGGATGCCATCAACAGCTGCCATGTCAGTGCCTA < 41bp 1 0.442936941614029 1 0.802037477493286 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128491320 chr7:128491324 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_7519 1 0 1 0 2 chromatin 1 0.500231648109391 0.395925045013428 0.999536703781217 hm5C_site_10199 DeepMRMD:0.395925045013428;iRNA_m5C:0.999536703781217 not specified not specified 10200 chr7 128491338 128491338 1 + C T rs117517372 128491320 + 128491300 128491340 41 TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCCTA TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCTTA < 41bp 1 0.322531969971233 1 0.755885899066925 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128491320 chr7:128491338 synonymous SNV . 0 39 hm5C_associated_SNPs_7520 1 0 1 0 2 chromatin 1 0.500231643873266 0.48822820186615 0.999536712253468 hm5C_site_10200 DeepMRMD:0.48822820186615;iRNA_m5C:0.999536712253468 not specified not specified 10201 chr7 128696568 128696568 1 + A G rs148139599 128696557 + 128696537 128696577 41 GTGAAGGACTGGAGCAAGGTCATCTTGGCCTATGATCCCGT GTGAAGGACTGGAGCAAGGTCATCTTGGCCTGTGATCCCGT < 41bp 1 0.258568198872869 1 0.0671891272068024 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPI1P2 ENSG00000230359 ncRNA_exonic Human transcribed_processed_pseudogene chr7:128696557 chr7:128696568 . . 0 32 hm5C_associated_SNPs_7521 0 0 0 0 0 unknown 1 0.499117088713837 1 1 hm5C_site_10201 DeepMRMD:1;iRNA_m5C:1 10202 chr7 128696568 128696568 1 + A G rs148139599 128696560 + 128696540 128696580 41 AAGGACTGGAGCAAGGTCATCTTGGCCTATGATCCCGTGTG AAGGACTGGAGCAAGGTCATCTTGGCCTGTGATCCCGTGTG < 41bp 1 0.512517711724241 1 0.268429666757584 experiment 0.974964576551518 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1P2 ENSG00000230359 ncRNA_exonic Human transcribed_processed_pseudogene chr7:128696560 chr7:128696568 . . 0 29 hm5C_associated_SNPs_7522 0 0 0 0 0 unknown 1 0.500231643921098 1 0.999536712157805 hm5C_site_10202 DeepMRMD:1;iRNA_m5C:0.999536712157805 10203 chr7 129939221 129939221 1 + G A rs61731647 129939222 + 129939202 129939242 41 ATCCCAGGGCTTAGAGTACGCAGTGACAATTGAGGACCTGC ATCCCAGGGCTTAGAGTACACAGTGACAATTGAGGACCTGC < 41bp 1 0.575359256836709 1 0.0949289798736572 experiment 0.849281486326582 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129939222 chr7:129939221 nonsynonymous SNV 0.402 1 20 hm5C_associated_SNPs_7524 0 0 0 0 1 Endoplasmic reticulum 1 0.500231647119425 1 0.99953670576115 hm5C_site_10203 DeepMRMD:1;iRNA_m5C:0.99953670576115 10204 chr7 129946635 129946635 1 + T A rs34549855 129946651 + 129946631 129946671 41 TATCTGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG TATCAGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG < 41bp 1 0.2322240620058 1 0.284936845302582 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946651 chr7:129946635 synonymous SNV . 0 5 hm5C_associated_SNPs_7525 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921077 1 0.999536712157847 hm5C_site_10204 DeepMRMD:1;iRNA_m5C:0.999536712157847 10205 chr7 129950667 129950667 1 + T C rs73721864 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCCGAAGTGTACCACGGACCCCACGCCAATTCGGAAGTG < 41bp 1 0.521927318408136 1 0.0723860263824463 experiment 0.956145363183728 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950667 synonymous SNV . 0 17 hm5C_associated_SNPs_7526 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921102 1 0.999536712157795 hm5C_site_10205 DeepMRMD:1;iRNA_m5C:0.999536712157795 10206 chr7 129950667 129950667 1 + T C rs73721864 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCGAAGTGTACCACGGACCCCACGCCAATTCGGAAGTGG < 41bp 1 0.0879808035500798 1 0.0837815403938293 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950667 synonymous SNV . 0 16 hm5C_associated_SNPs_7527 0 0 0 0 1 Endoplasmic reticulum 1 0.500231638914945 1 0.99953672217011 hm5C_site_10206 DeepMRMD:1;iRNA_m5C:0.99953672217011 10207 chr7 130021488 130021488 1 + G A rs1126899 130021476 + 130021456 130021496 41 TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCA TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGACCTGCCCA < 41bp 1 0.418299964921304 1 0.0401821434497833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021476 chr7:130021488 synonymous SNV . 0 33 hm5C_associated_SNPs_7528 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643876284 1 0.999536712247432 hm5C_site_10207 DeepMRMD:1;iRNA_m5C:0.999536712247432 10208 chr7 130021488 130021488 1 + G A rs1126899 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCC < 41bp 1 0.144905827212845 1 0.389458626508713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021488 synonymous SNV . 0 20 hm5C_associated_SNPs_7529 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_10208 DeepMRMD:1;iRNA_m5C:0.999536712157815 10209 chr7 130021488 130021488 1 + G A rs1126899 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCA < 41bp 1 0.6159913829901 1 0.569707155227661 experiment 0.7680172340198 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021488 synonymous SNV . 0 19 hm5C_associated_SNPs_7530 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644309882 0.860585689544678 0.999536711380236 hm5C_site_10209 DeepMRMD:0.860585689544678;iRNA_m5C:0.999536711380236 10210 chr7 130021488 130021488 1 + G A rs1126899 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCG < 41bp 1 0.298862480506348 1 0.312385141849518 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021488 synonymous SNV . 0 16 hm5C_associated_SNPs_7531 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921071 1 0.999536712157858 hm5C_site_10210 DeepMRMD:1;iRNA_m5C:0.999536712157858 10211 chr7 130021488 130021488 1 + G A rs1126899 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCGA < 41bp 1 0.323948244809516 1 0.123228490352631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021488 synonymous SNV . 0 15 hm5C_associated_SNPs_7532 0 0 0 0 2 Endoplasmic reticulum 1 0.500231639534848 1 0.999536720930305 hm5C_site_10211 DeepMRMD:1;iRNA_m5C:0.999536720930305 10212 chr7 130021488 130021488 1 + G A rs1126899 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCGACGT < 41bp 1 0.459919539927957 1 0.0448881387710571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021488 synonymous SNV . 0 12 hm5C_associated_SNPs_7534 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643916855 1 0.99953671216629 hm5C_site_10212 DeepMRMD:1;iRNA_m5C:0.99953671216629 10213 chr7 130021488 130021488 1 + G A rs1126899 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGACCTGCCCACCCTGGCTCCCCCATCGACGTC < 41bp 1 0.622825435058059 1 0.136277943849564 experiment 0.754349129883883 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021488 synonymous SNV . 0 11 hm5C_associated_SNPs_7535 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643954905 1 0.99953671209019 hm5C_site_10213 DeepMRMD:1;iRNA_m5C:0.99953671209019 10214 chr7 130021488 130021488 1 + G A rs1126899 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.206719454415651 1 0.121041119098663 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021488 synonymous SNV . 0 6 hm5C_associated_SNPs_7536 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643976524 1 0.999536712046952 hm5C_site_10214 DeepMRMD:1;iRNA_m5C:0.999536712046952 10215 chr7 130021488 130021488 1 + G A rs1126899 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC < 41bp 1 0.204495816385477 1 0.0332126319408417 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021488 synonymous SNV . 0 4 hm5C_associated_SNPs_7537 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10215 DeepMRMD:1;iRNA_m5C:0.999536712157815 10216 chr7 130021488 130021488 1 + G A rs1126899 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC < 41bp 1 0.437906148583406 1 0.271169662475586 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021488 synonymous SNV . 0 3 hm5C_associated_SNPs_7538 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10216 DeepMRMD:1;iRNA_m5C:0.999536712157815 10217 chr7 130021488 130021488 1 + G A rs1126899 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC < 41bp 1 0.0891313962113538 1 0.0561184287071228 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021488 synonymous SNV . 0 2 hm5C_associated_SNPs_7539 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920978 1 0.999536712158044 hm5C_site_10217 DeepMRMD:1;iRNA_m5C:0.999536712158044 10218 chr7 130021488 130021488 1 + G A rs1126899 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT ACCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT < 41bp 1 0.0494596176211269 1 0.378213495016098 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021488 synonymous SNV . 0 1 hm5C_associated_SNPs_7540 0 0 0 0 2 Endoplasmic reticulum 1 0.500231146382951 1 0.999537707234099 hm5C_site_10218 DeepMRMD:1;iRNA_m5C:0.999537707234099 10219 chr7 130021524 130021524 1 + G T rs559471767 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTTC < 41bp 1 0.214879096536959 1 0.0378236770629883 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021524 synonymous SNV . 0 40 hm5C_associated_SNPs_7541 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643919695 1 0.999536712160609 hm5C_site_10219 DeepMRMD:1;iRNA_m5C:0.999536712160609 10220 chr7 130021524 130021524 1 + G T rs559471767 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTTCC < 41bp 1 0.463965629116156 1 0.324196636676788 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021524 synonymous SNV . 0 39 hm5C_associated_SNPs_7542 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10220 DeepMRMD:1;iRNA_m5C:0.999536712157815 10221 chr7 130021524 130021524 1 + G T rs559471767 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTTCCC < 41bp 1 0.0901503781706638 1 0.111787378787994 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021524 synonymous SNV . 0 38 hm5C_associated_SNPs_7543 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642955066 1 0.999536714089869 hm5C_site_10221 DeepMRMD:1;iRNA_m5C:0.999536714089869 10222 chr7 130021524 130021524 1 + G T rs559471767 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTTCCCT < 41bp 1 0.044767285898555 1 0.202814400196075 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021524 synonymous SNV . 0 37 hm5C_associated_SNPs_7544 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643210979 1 0.999536713578041 hm5C_site_10222 DeepMRMD:1;iRNA_m5C:0.999536713578041 10223 chr7 130021524 130021524 1 + G T rs559471767 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTTCCCTT < 41bp 1 0.373163975398991 1 0.233069330453873 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021524 synonymous SNV . 0 36 hm5C_associated_SNPs_7545 0 0 0 0 1 Endoplasmic reticulum 1 0.500005709628707 1 0.999988580742585 hm5C_site_10223 DeepMRMD:1;iRNA_m5C:0.999988580742585 10224 chr7 130021524 130021524 1 + G T rs559471767 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTCCCCCATCGACGTCCGAGTTCCCTTCCCCAG < 41bp 1 0.384173739539782 1 0.317593365907669 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021524 synonymous SNV . 0 30 hm5C_associated_SNPs_7546 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157817 hm5C_site_10224 DeepMRMD:1;iRNA_m5C:0.999536712157817 10225 chr7 130021524 130021524 1 + G T rs559471767 130021518 + 130021498 130021538 41 CCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT CCTGGCTCCCCCATCGACGTCCGAGTTCCCTTCCCCAGCAT < 41bp 1 0.510525413360127 1 0.425122141838074 experiment 0.978949173279745 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021518 chr7:130021524 synonymous SNV . 0 27 hm5C_associated_SNPs_7547 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643911995 1 0.999536712176009 hm5C_site_10225 DeepMRMD:1;iRNA_m5C:0.999536712176009 10226 chr7 130021524 130021524 1 + G T rs559471767 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTCCCCCATCGACGTCCGAGTTCCCTTCCCCAGCATC < 41bp 1 0.371980437767301 1 0.22535565495491 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021524 synonymous SNV . 0 26 hm5C_associated_SNPs_7548 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642302324 1 0.999536715395352 hm5C_site_10226 DeepMRMD:1;iRNA_m5C:0.999536715395352 10227 chr7 130021524 130021524 1 + G T rs559471767 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG CCCCCATCGACGTCCGAGTTCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0997361470860829 1 0.0225912928581238 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021524 synonymous SNV . 0 20 hm5C_associated_SNPs_7549 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_10227 DeepMRMD:1;iRNA_m5C:0.999536712157815 10228 chr7 130021524 130021524 1 + G T rs559471767 130021526 + 130021506 130021546 41 CCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGG CCCCATCGACGTCCGAGTTCCCTTCCCCAGCATCCAGGCGG < 41bp 1 0.0309653925335836 1 0.0447860360145569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021526 chr7:130021524 synonymous SNV . 0 19 hm5C_associated_SNPs_7550 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642172388 1 0.999536715655225 hm5C_site_10228 DeepMRMD:1;iRNA_m5C:0.999536715655225 10229 chr7 130021524 130021524 1 + G T rs559471767 130021527 + 130021507 130021547 41 CCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGT CCCATCGACGTCCGAGTTCCCTTCCCCAGCATCCAGGCGGT < 41bp 1 0.230320046843094 1 0.0905312299728394 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021527 chr7:130021524 synonymous SNV . 0 18 hm5C_associated_SNPs_7551 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10229 DeepMRMD:1;iRNA_m5C:0.999536712157815 10230 chr7 130021524 130021524 1 + G T rs559471767 130021530 + 130021510 130021550 41 ATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA ATCGACGTCCGAGTTCCCTTCCCCAGCATCCAGGCGGTCAA < 41bp 1 0.680041628470851 1 0.718171834945679 experiment 0.639916743058299 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021530 chr7:130021524 synonymous SNV . 0 15 hm5C_associated_SNPs_7552 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.563656330108642 0.999536712157815 hm5C_site_10230 DeepMRMD:0.563656330108642;iRNA_m5C:0.999536712157815 10231 chr7 130021524 130021524 1 + G T rs559471767 130021531 + 130021511 130021551 41 TCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG TCGACGTCCGAGTTCCCTTCCCCAGCATCCAGGCGGTCAAG < 41bp 1 0.28888365374706 1 0.289722114801407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021531 chr7:130021524 synonymous SNV . 0 14 hm5C_associated_SNPs_7553 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643910255 1 0.99953671217949 hm5C_site_10231 DeepMRMD:1;iRNA_m5C:0.99953671217949 10232 chr7 130021524 130021524 1 + G T rs559471767 130021532 + 130021512 130021552 41 CGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA CGACGTCCGAGTTCCCTTCCCCAGCATCCAGGCGGTCAAGA < 41bp 1 0.277375600587527 1 0.162574887275696 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021532 chr7:130021524 synonymous SNV . 0 13 hm5C_associated_SNPs_7554 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10232 DeepMRMD:1;iRNA_m5C:0.999536712157815 10233 chr7 130021524 130021524 1 + G T rs559471767 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTCCGAGTTCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT < 41bp 1 0.13020961236861 1 0.114749372005463 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021524 synonymous SNV . 0 9 hm5C_associated_SNPs_7556 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10233 DeepMRMD:1;iRNA_m5C:0.999536712157815 10234 chr7 130021524 130021524 1 + G T rs559471767 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT CGAGTTCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT < 41bp 1 0.36974298627182 1 0.359341740608215 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021524 synonymous SNV . 0 6 hm5C_associated_SNPs_7557 0 0 0 0 1 Endoplasmic reticulum 1 0.500231688907279 1 0.999536622185442 hm5C_site_10234 DeepMRMD:1;iRNA_m5C:0.999536622185442 10235 chr7 130021524 130021524 1 + G T rs559471767 130021540 + 130021520 130021560 41 GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG GAGTTCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG < 41bp 1 0.66847223659255 1 0.835278272628784 experiment 0.663055526814901 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021540 chr7:130021524 synonymous SNV . 0 5 hm5C_associated_SNPs_7558 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.329443454742432 0.999536712157815 hm5C_site_10235 DeepMRMD:0.329443454742432;iRNA_m5C:0.999536712157815 10236 chr7 130021524 130021524 1 + G T rs559471767 130021544 + 130021524 130021564 41 GCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTGGAGT TCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTGGAGT < 41bp 1 0.179270067894377 1 0.416392147541046 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021544 chr7:130021524 synonymous SNV . 0 1 hm5C_associated_SNPs_7559 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164389234 1 0.999536712215319 hm5C_site_10236 DeepMRMD:1;iRNA_m5C:0.999536712215319 10237 chr7 130145329 130145329 1 + C T rs190221868 130145326 + 130145306 130145346 41 AAGGGGGGCTCCTTCCCTCTCCTCGAATGACGTTATGGGCA AAGGGGGGCTCCTTCCCTCTCCTTGAATGACGTTATGGGCA < 41bp 1 0.0938923234914285 1 0.739928245544434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEST ENSG00000106484 UTR3 Human protein_coding chr7:130145326 chr7:130145329 . . 0 24 hm5C_associated_SNPs_7560 0 0 0 2 0 Ribosome 1 0.500231643921079 0.520143508911132 0.999536712157842 hm5C_site_10237 DeepMRMD:0.520143508911132;iRNA_m5C:0.999536712157842 10238 chr7 130145329 130145329 1 + C T rs190221868 130145327 + 130145307 130145347 41 AGGGGGGCTCCTTCCCTCTCCTCGAATGACGTTATGGGCAC AGGGGGGCTCCTTCCCTCTCCTTGAATGACGTTATGGGCAC < 41bp 1 0.636852221862453 1 0.756649374961853 experiment 0.726295556275094 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEST ENSG00000106484 UTR3 Human protein_coding chr7:130145327 chr7:130145329 . . 0 23 hm5C_associated_SNPs_7561 0 0 0 2 0 Ribosome 1 0.500231643921092 0.486701250076294 0.999536712157815 hm5C_site_10238 DeepMRMD:0.486701250076294;iRNA_m5C:0.999536712157815 10239 chr7 131179555 131179555 1 + A T rs10260552 131179544 + 131179524 131179564 41 TTTGGATTTGTGTGAAATGTCTTTTGAAAAGAAAGTAGATA TTTGGATTTGTGTGAAATGTCTTTTGAAAAGTAAGTAGATA < 41bp 1 0.0643984889653291 1 0.0555345118045807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MKLN1 ENSG00000273489 ncRNA_exonic Human antisense chr7:131179544 chr7:131179555 . . 0 32 hm5C_associated_SNPs_7562 0 0 1 0 0 Nucleus 1 0.500231643921095 1 0.99953671215781 hm5C_site_10239 DeepMRMD:1;iRNA_m5C:0.99953671215781 10240 chr7 133682273 133682273 1 + G A rs137961262 133682272 + 133682252 133682292 41 TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAG TCCTGCTCAAGACAGCCACACAAACACGGATCTCCCCCCAG < 41bp 1 0.18404573014046 1 0.138455659151077 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682272 chr7:133682273 synonymous SNV . 0 22 hm5C_associated_SNPs_7563 0 0 1 0 1 Nucleus 1 0.500231644060074 1 0.999536711879852 hm5C_site_10240 DeepMRMD:1;iRNA_m5C:0.999536711879852 10241 chr7 133682273 133682273 1 + G A rs137961262 133682278 + 133682258 133682298 41 TCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTCAG TCAAGACAGCCACACAAACACGGATCTCCCCCCAGTGTCAG < 41bp 1 0.40406512244378 1 0.177852243185043 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682278 chr7:133682273 synonymous SNV . 0 16 hm5C_associated_SNPs_7564 0 0 1 0 1 Nucleus 1 0.50023164392927 1 0.99953671214146 hm5C_site_10241 DeepMRMD:1;iRNA_m5C:0.99953671214146 10242 chr7 133682285 133682285 1 + C T rs34608222 133682272 + 133682252 133682292 41 TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAG TCCTGCTCAAGACAGCCACACGAACACGGATCTTCCCCCAG < 41bp 1 0.215345598512379 1 0.0693449378013611 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682272 chr7:133682285 synonymous SNV . 0 34 hm5C_associated_SNPs_7565 0 0 1 0 1 Nucleus 1 0.500231643956165 1 0.999536712087671 hm5C_site_10242 DeepMRMD:1;iRNA_m5C:0.999536712087671 10243 chr7 133682285 133682285 1 + C T rs34608222 133682278 + 133682258 133682298 41 TCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTCAG TCAAGACAGCCACACGAACACGGATCTTCCCCCAGTGTCAG < 41bp 1 0.400239100077229 1 0.228960067033768 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682278 chr7:133682285 synonymous SNV . 0 28 hm5C_associated_SNPs_7567 0 0 1 0 1 Nucleus 1 0.500231643921085 1 0.999536712157829 hm5C_site_10243 DeepMRMD:1;iRNA_m5C:0.999536712157829 10244 chr7 134215403 134215403 1 + T A rs1722883 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTCTCCTCTAGGCAAAGTGAAAG < 41bp 1 0.272114864771606 1 0.425022095441818 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215403 synonymous SNV . 0 28 hm5C_associated_SNPs_7568 0 1 1 0 1 exosome 1 0.500231546420327 1 0.999536907159347 hm5C_site_10244 DeepMRMD:1;iRNA_m5C:0.999536907159347 10245 chr7 134552477 134552477 1 + A G rs78476965 134552471 + 134552451 134552491 41 CATCATCTGGTCTCCCTGAACCTGAAATCACACCATGGATG CATCATCTGGTCTCCCTGAACCTGAAGTCACACCATGGATG < 41bp 1 0.459156010538914 1 0.288136422634125 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CALD1 ENSG00000122786 UTR5 Human protein_coding chr7:134552471 chr7:134552477 . . 0 27 hm5C_associated_SNPs_7569 0 0 1 0 2 Ribosome 1 0.500229347111329 1 0.999541305777341 hm5C_site_10245 DeepMRMD:1;iRNA_m5C:0.999541305777341 10246 chr7 139107009 139107009 1 + A C rs202072515 139107012 + 139106992 139107032 41 GAGATCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAAT GAGATCGGAAAGATAAGCAGCGGTCCTATGAGAGTGCTAAT < 41bp 1 0.133578063699598 1 0.510713398456573 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107012 chr7:139107009 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_7571 0 0 1 0 0 unknown 1 0.500231655594644 0.978573203086854 0.999536688810711 hm5C_site_10246 DeepMRMD:0.978573203086854;iRNA_m5C:0.999536688810711 10247 chr7 139107009 139107009 1 + A C rs202072515 139107016 + 139106996 139107036 41 TCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCA TCGGAAAGATAAGCAGCGGTCCTATGAGAGTGCTAATGGCA < 41bp 1 0.091446977144508 1 0.214930057525635 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107016 chr7:139107009 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_7572 0 0 1 0 0 unknown 1 0.500231584654596 1 0.999536830690808 hm5C_site_10247 DeepMRMD:1;iRNA_m5C:0.999536830690808 10248 chr7 139107009 139107009 1 + A C rs202072515 139107017 + 139106997 139107037 41 CGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAG CGGAAAGATAAGCAGCGGTCCTATGAGAGTGCTAATGGCAG < 41bp 1 0.192231213737406 1 0.0992810726165771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107017 chr7:139107009 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_7573 0 0 1 0 0 unknown 1 0.50023165905139 1 0.99953668189722 hm5C_site_10248 DeepMRMD:1;iRNA_m5C:0.99953668189722 10249 chr7 139107009 139107009 1 + A C rs202072515 139107028 + 139107008 139107048 41 GAAGCGGTCCTATGAGAGTGCTAATGGCAGATCAGAAGACA GCAGCGGTCCTATGAGAGTGCTAATGGCAGATCAGAAGACA < 41bp 1 0.369440025528875 1 0.135240375995636 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107028 chr7:139107009 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_7574 0 0 1 0 0 unknown 1 0.50023164406115 1 0.999536711877701 hm5C_site_10249 DeepMRMD:1;iRNA_m5C:0.999536711877701 10250 chr7 140379042 140379042 1 + C T rs150090657 140379056 + 140379036 140379076 41 CCTCTGCGCCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC CCTCTGTGCCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC < 41bp 1 0.582029984660381 1 0.749381303787231 experiment 0.835940030679238 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140379056 chr7:140379042 nonsynonymous SNV 0.922 1 7 hm5C_associated_SNPs_7575 0 0 1 0 2 Ribosome 1 0.500231643921 0.501237392425538 0.999536712158 hm5C_site_10250 DeepMRMD:0.501237392425538;iRNA_m5C:0.999536712158 10251 chr7 140397954 140397954 1 + G C rs112027407 140397974 + 140397954 140397994 41 GGGGTGGGCAGAAGGCAAAGCCCTGTGTGACTTGGGCAAAG CGGGTGGGCAGAAGGCAAAGCCCTGTGTGACTTGGGCAAAG < 41bp 1 0.262370002960325 1 0.200371265411377 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFB2 ENSG00000090266;ENSG00000090266 UTR5;UTR3 Human other chr7:140397974 chr7:140397954 . . 0 1 hm5C_associated_SNPs_7576 0 0 1 0 1 Ribosome 1 0.500231643937559 1 0.999536712124881 hm5C_site_10251 DeepMRMD:1;iRNA_m5C:0.999536712124881 10252 chr7 140404746 140404746 1 + C T rs79658946 140404750 + 140404730 140404770 41 ACTGAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG ACTGAAGGTGTAGACTTAGCCTCACTCTGTACAAGTGGGTG < 41bp 1 0.244801045967781 1 0.213245034217834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB2 ENSG00000090266 UTR3 Human protein_coding chr7:140404750 chr7:140404746 . . 0 17 hm5C_associated_SNPs_7577 0 0 1 3 1 Ribosome 1 0.500231643921037 1 0.999536712157926 hm5C_site_10252 DeepMRMD:1;iRNA_m5C:0.999536712157926 10253 chr7 140404760 140404760 1 + A G rs201056308 140404750 + 140404730 140404770 41 ACTGAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG ACTGAAGGTGTAGACTCAGCCTCACTCTGTGCAAGTGGGTG < 41bp 1 0.179370460949523 1 0.135564684867859 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB2 ENSG00000090266 UTR3 Human protein_coding chr7:140404750 chr7:140404760 . . 0 31 hm5C_associated_SNPs_7578 0 0 1 1 1 Ribosome 1 0.500230937331578 1 0.999538125336845 hm5C_site_10253 DeepMRMD:1;iRNA_m5C:0.999538125336845 10254 chr7 141490107 141490107 1 + A G rs2234012 141490094 + 141490074 141490114 41 TTGTGGTGTGAAAATTTACCCTGGTGTGTTATCACTACCAG TTGTGGTGTGAAAATTTACCCTGGTGTGTTATCGCTACCAG < 41bp 1 0.660605573357277 1 0.364307701587677 experiment 0.678788853285446 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TAS2R5 ENSG00000127366 UTR5 Human protein_coding chr7:141490094 chr7:141490107 . . 0 34 hm5C_associated_SNPs_7579 0 0 0 0 0 nucleolus 1 0.50023164392109 1 0.999536712157819 hm5C_site_10254 DeepMRMD:1;iRNA_m5C:0.999536712157819 10255 chr7 142458437 142458437 1 + C T rs372637371 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATTGTTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.302399324151122 1 0.436391025781631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458437 synonymous SNV . 0 12 hm5C_associated_SNPs_7581 0 0 0 0 1 Cytosol 1 0.500236393784106 1 0.999527212431787 hm5C_site_10255 DeepMRMD:1;iRNA_m5C:0.999527212431787 10256 chr7 142458437 142458437 1 + C T rs372637371 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATTGTTGGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.179701627078617 1 0.262964844703674 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458437 synonymous SNV . 0 9 hm5C_associated_SNPs_7582 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10256 DeepMRMD:1;iRNA_m5C:0.999536712157815 10257 chr7 142458437 142458437 1 + C T rs372637371 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATTGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.428847378889624 1 0.300113677978516 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458437 synonymous SNV . 0 6 hm5C_associated_SNPs_7583 0 0 0 0 1 Cytosol 1 0.500231644526788 1 0.999536710946425 hm5C_site_10257 DeepMRMD:1;iRNA_m5C:0.999536710946425 10258 chr7 142459659 142459659 1 + G A rs111033564 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCAAAGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.525690733274522 1 0.246982157230377 experiment 0.948618533450956 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459659 nonsynonymous SNV 0.220 1 16 hm5C_associated_SNPs_7586 1 0 0 0 1 Cytosol 1 0.500231643885234 1 0.999536712229532 hm5C_site_10258 DeepMRMD:1;iRNA_m5C:0.999536712229532 Hereditary pancreatitis Hereditary pancreatitis 10259 chr7 142459679 142459679 1 + G A rs376671702 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAACAGTT < 41bp 1 0.515033389386791 1 0.409529328346252 experiment 0.969933221226417 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459679 synonymous SNV . 0 36 hm5C_associated_SNPs_7587 0 0 0 0 1 Cytosol 1 0.500231616875076 1 0.999536766249848 hm5C_site_10259 DeepMRMD:1;iRNA_m5C:0.999536766249848 10260 chr7 142459679 142459679 1 + G A rs376671702 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGAATGAACAGTTCATCAATGCAGCCAAG < 41bp 1 0.540190995060074 1 0.419238567352295 experiment 0.919618009879852 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459679 synonymous SNV . 0 20 hm5C_associated_SNPs_7588 0 0 0 0 1 Cytosol 1 0.500231643922244 1 0.999536712155512 hm5C_site_10260 DeepMRMD:1;iRNA_m5C:0.999536712155512 10261 chr7 142459679 142459679 1 + G A rs376671702 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATGAACAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.645888905450716 1 0.048082172870636 experiment 0.708222189098568 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459679 synonymous SNV . 0 15 hm5C_associated_SNPs_7589 0 0 0 0 1 Cytosol 1 0.500231644780153 1 0.999536710439694 hm5C_site_10261 DeepMRMD:1;iRNA_m5C:0.999536710439694 10262 chr7 142459679 142459679 1 + G A rs376671702 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAACAGTTCATCAATGCAGCCAAGATCATCCG < 41bp 1 0.627534613079459 1 0.140880644321442 experiment 0.744930773841081 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459679 synonymous SNV . 0 12 hm5C_associated_SNPs_7590 0 0 0 0 1 Cytosol 1 0.50023163362297 1 0.99953673275406 hm5C_site_10262 DeepMRMD:1;iRNA_m5C:0.99953673275406 10263 chr7 142459679 142459679 1 + G A rs376671702 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAACAGTTCATCAATGCAGCCAAGATCATCCGCCACC < 41bp 1 0.577752301763566 1 0.0341362953186035 experiment 0.844495396472867 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459679 synonymous SNV . 0 7 hm5C_associated_SNPs_7591 0 0 0 0 1 Cytosol 1 0.50023164474178 1 0.99953671051644 hm5C_site_10263 DeepMRMD:1;iRNA_m5C:0.99953671051644 10264 chr7 142459679 142459679 1 + G A rs376671702 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAACAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC < 41bp 1 0.391069936297328 1 0.312047362327576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459679 synonymous SNV . 0 4 hm5C_associated_SNPs_7592 0 0 0 0 1 Cytosol 1 0.500231643912158 1 0.999536712175683 hm5C_site_10264 DeepMRMD:1;iRNA_m5C:0.999536712175683 10265 chr7 142459703 142459703 1 + C T rs139664510 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATTAT < 41bp 1 0.628341452876079 1 0.0469895303249359 experiment 0.743317094247842 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459703 synonymous SNV . 0 39 hm5C_associated_SNPs_7593 1 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10265 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 10266 chr7 142459703 142459703 1 + C T rs139664510 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATTATCCG < 41bp 1 0.603991195093371 1 0.312358736991882 experiment 0.792017609813257 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459703 synonymous SNV . 0 36 hm5C_associated_SNPs_7594 1 0 0 0 1 Cytosol 1 0.500231643913525 1 0.999536712172949 hm5C_site_10266 DeepMRMD:1;iRNA_m5C:0.999536712172949 Hereditary pancreatitis Hereditary pancreatitis 10267 chr7 142459703 142459703 1 + C T rs139664510 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCAGCCAAGATTATCCGCCACC < 41bp 1 0.497535370238124 1 0.0478076636791229 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459703 synonymous SNV . 0 31 hm5C_associated_SNPs_7595 1 0 0 0 1 Cytosol 1 0.500231641694242 1 0.999536716611516 hm5C_site_10267 DeepMRMD:1;iRNA_m5C:0.999536716611516 Hereditary pancreatitis Hereditary pancreatitis 10268 chr7 142459703 142459703 1 + C T rs139664510 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAGATTATCCGCCACCCCC < 41bp 1 0.352568253166292 1 0.187770694494247 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459703 synonymous SNV . 0 28 hm5C_associated_SNPs_7596 1 0 0 0 1 Cytosol 1 0.50023164353704 1 0.999536712925919 hm5C_site_10268 DeepMRMD:1;iRNA_m5C:0.999536712925919 Hereditary pancreatitis Hereditary pancreatitis 10269 chr7 142459703 142459703 1 + C T rs139664510 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATTATCCGCCACCCCCAATACGACAG < 41bp 1 0.371813462379527 1 0.440144091844559 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459703 synonymous SNV . 0 18 hm5C_associated_SNPs_7597 1 0 0 0 1 Cytosol 1 0.500231643919312 1 0.999536712161377 hm5C_site_10269 DeepMRMD:1;iRNA_m5C:0.999536712161377 Hereditary pancreatitis Hereditary pancreatitis 10270 chr7 142459703 142459703 1 + C T rs139664510 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATTATCCGCCACCCCCAATACGACAGGAA < 41bp 1 0.108070780879589 1 0.0706679224967957 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459703 synonymous SNV . 0 15 hm5C_associated_SNPs_7598 1 0 0 0 1 Cytosol 1 0.500231643362444 1 0.999536713275112 hm5C_site_10270 DeepMRMD:1;iRNA_m5C:0.999536713275112 Hereditary pancreatitis Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid) Hereditary pancreatitis 10271 chr7 142459703 142459703 1 + C T rs139664510 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATTATCCGCCACCCCCAATACGACAGGAAG < 41bp 1 0.179196631594745 1 0.0651943981647491 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459703 synonymous SNV . 0 14 hm5C_associated_SNPs_7599 1 0 0 0 1 Cytosol 1 0.500231643921104 1 0.999536712157791 hm5C_site_10271 DeepMRMD:1;iRNA_m5C:0.999536712157791 Hereditary pancreatitis Hereditary pancreatitis 10272 chr7 142459703 142459703 1 + C T rs139664510 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATTATCCGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.133816938296787 1 0.0511132776737213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459703 synonymous SNV . 0 12 hm5C_associated_SNPs_7600 1 0 0 0 1 Cytosol 1 0.500231643921125 1 0.99953671215775 hm5C_site_10272 DeepMRMD:1;iRNA_m5C:0.99953671215775 Hereditary pancreatitis Hereditary pancreatitis 10273 chr7 142459703 142459703 1 + C T rs139664510 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATTATCCGCCACCCCCAATACGACAGGAAGACT < 41bp 1 0.477210405292505 1 0.524470388889313 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459703 synonymous SNV . 0 11 hm5C_associated_SNPs_7601 1 0 0 0 1 Cytosol 1 0.500231643921092 0.951059222221374 0.999536712157815 hm5C_site_10273 DeepMRMD:0.951059222221374;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 10274 chr7 142459703 142459703 1 + C T rs139664510 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATTATCCGCCACCCCCAATACGACAGGAAGACTC < 41bp 1 0.499078114196151 1 0.166388213634491 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459703 synonymous SNV . 0 10 hm5C_associated_SNPs_7602 1 0 0 0 1 Cytosol 1 0.500231643921099 1 0.999536712157801 hm5C_site_10274 DeepMRMD:1;iRNA_m5C:0.999536712157801 Hereditary pancreatitis Hereditary pancreatitis 10275 chr7 142459703 142459703 1 + C T rs139664510 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATTATCCGCCACCCCCAATACGACAGGAAGACTCT < 41bp 1 0.24490248951228 1 0.235744386911392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459703 synonymous SNV . 0 9 hm5C_associated_SNPs_7603 1 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_10275 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 10276 chr7 142459703 142459703 1 + C T rs139664510 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATTATCCGCCACCCCCAATACGACAGGAAGACTCTG < 41bp 1 0.486183210586067 1 0.127536237239838 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459703 synonymous SNV . 0 8 hm5C_associated_SNPs_7604 1 0 0 0 1 Cytosol 1 0.500231643922193 1 0.999536712155614 hm5C_site_10276 DeepMRMD:1;iRNA_m5C:0.999536712155614 Hereditary pancreatitis Hereditary pancreatitis 10277 chr7 142459835 142459835 1 + G A rs369013081 142459816 + 142459796 142459836 41 CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACAA < 41bp 1 0.261375066800655 1 0.265331268310547 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459816 chr7:142459835 synonymous SNV . 0 40 hm5C_associated_SNPs_7605 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157813 hm5C_site_10277 DeepMRMD:1;iRNA_m5C:0.999536712157813 10278 chr7 142459835 142459835 1 + G A rs369013081 142459817 + 142459797 142459837 41 ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACAAA < 41bp 1 0.110684264409603 1 0.31091096997261 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459817 chr7:142459835 synonymous SNV . 0 39 hm5C_associated_SNPs_7606 0 0 0 0 1 Cytosol 1 0.500231643921136 1 0.999536712157729 hm5C_site_10278 DeepMRMD:1;iRNA_m5C:0.999536712157729 10279 chr7 142459835 142459835 1 + G A rs369013081 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACAAAG < 41bp 1 0.118109709642448 1 0.263774633407593 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459835 synonymous SNV . 0 38 hm5C_associated_SNPs_7607 0 0 0 0 1 Cytosol 1 0.500231644655107 1 0.999536710689786 hm5C_site_10279 DeepMRMD:1;iRNA_m5C:0.999536710689786 10280 chr7 142459835 142459835 1 + G A rs369013081 142459819 + 142459799 142459839 41 CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACAAAGT < 41bp 1 0.668617671672073 1 0.939314424991608 experiment 0.662764656655854 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459819 chr7:142459835 synonymous SNV . 0 37 hm5C_associated_SNPs_7608 0 0 0 0 1 Cytosol 1 0.500231643921195 0.121371150016784 0.99953671215761 hm5C_site_10280 DeepMRMD:0.121371150016784;iRNA_m5C:0.99953671215761 10281 chr7 142459835 142459835 1 + G A rs369013081 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACAAAGTGC < 41bp 1 0.284293617160662 1 0.731705367565155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459835 synonymous SNV . 0 35 hm5C_associated_SNPs_7609 0 0 0 0 1 Cytosol 1 0.500231643921696 0.53658926486969 0.999536712156607 hm5C_site_10281 DeepMRMD:0.53658926486969;iRNA_m5C:0.999536712156607 10282 chr7 142459835 142459835 1 + G A rs369013081 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACAAAGTGCC < 41bp 1 0.370955226927762 1 0.539935052394867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459835 synonymous SNV . 0 34 hm5C_associated_SNPs_7610 0 0 0 0 1 Cytosol 1 0.500231643921092 0.920129895210266 0.999536712157815 hm5C_site_10282 DeepMRMD:0.920129895210266;iRNA_m5C:0.999536712157815 10283 chr7 142459835 142459835 1 + G A rs369013081 142459825 + 142459805 142459845 41 TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCA TCTGCCCACCGCCCCTCCAGCCACTGGCACAAAGTGCCTCA < 41bp 1 0.446174643001567 1 0.152482509613037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459825 chr7:142459835 synonymous SNV . 0 31 hm5C_associated_SNPs_7611 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10283 DeepMRMD:1;iRNA_m5C:0.999536712157815 10284 chr7 142459835 142459835 1 + G A rs369013081 142459826 + 142459806 142459846 41 CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCAT CTGCCCACCGCCCCTCCAGCCACTGGCACAAAGTGCCTCAT < 41bp 1 0.651023570570543 1 0.309919834136963 experiment 0.697952858858915 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459826 chr7:142459835 synonymous SNV . 0 30 hm5C_associated_SNPs_7612 0 0 0 0 1 Cytosol 1 0.500231643926756 1 0.999536712146487 hm5C_site_10284 DeepMRMD:1;iRNA_m5C:0.999536712146487 10285 chr7 142459835 142459835 1 + G A rs369013081 142459828 + 142459808 142459848 41 GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCT GCCCACCGCCCCTCCAGCCACTGGCACAAAGTGCCTCATCT < 41bp 1 0.673221580905883 1 0.402917146682739 experiment 0.653556838188235 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459828 chr7:142459835 synonymous SNV . 0 28 hm5C_associated_SNPs_7613 0 0 0 0 1 Cytosol 1 0.500244292798669 1 0.999511414402661 hm5C_site_10285 DeepMRMD:1;iRNA_m5C:0.999511414402661 10286 chr7 142459835 142459835 1 + G A rs369013081 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTCCAGCCACTGGCACAAAGTGCCTCATCTCTGGCT < 41bp 1 0.620776536729535 1 0.162531793117523 experiment 0.758446926540931 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459835 synonymous SNV . 0 22 hm5C_associated_SNPs_7615 0 0 0 0 1 Cytosol 1 0.500231643940751 1 0.999536712118498 hm5C_site_10286 DeepMRMD:1;iRNA_m5C:0.999536712118498 10287 chr7 142459835 142459835 1 + G A rs369013081 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACAAAGTGCCTCATCTCTGGCTGGGGCAA < 41bp 1 0.387638066885317 1 0.0623470842838287 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459835 synonymous SNV . 0 15 hm5C_associated_SNPs_7616 0 0 0 0 1 Cytosol 1 0.500231648861164 1 0.999536702277671 hm5C_site_10287 DeepMRMD:1;iRNA_m5C:0.999536702277671 10288 chr7 142459835 142459835 1 + G A rs369013081 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACAAAGTGCCTCATCTCTGGCTGGGGCAAC < 41bp 1 0.438300786082781 1 0.040308952331543 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459835 synonymous SNV . 0 14 hm5C_associated_SNPs_7617 0 0 0 0 1 Cytosol 1 0.500231643921088 1 0.999536712157823 hm5C_site_10288 DeepMRMD:1;iRNA_m5C:0.999536712157823 10289 chr7 142459835 142459835 1 + G A rs369013081 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACAAAGTGCCTCATCTCTGGCTGGGGCAACAC < 41bp 1 0.475334893905337 1 0.0273897647857666 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459835 synonymous SNV . 0 12 hm5C_associated_SNPs_7618 0 0 0 0 1 Cytosol 1 0.500231671919577 1 0.999536656160845 hm5C_site_10289 DeepMRMD:1;iRNA_m5C:0.999536656160845 10290 chr7 142459841 142459841 1 + C A rs141847266 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGA < 41bp 1 0.305000740628363 1 0.554862380027771 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459841 stopgain 0.095 1 41 hm5C_associated_SNPs_7620 0 0 0 0 1 Cytosol 1 0.500231643921083 0.890275239944458 0.999536712157835 hm5C_site_10290 DeepMRMD:0.890275239944458;iRNA_m5C:0.999536712157835 10291 chr7 142459841 142459841 1 + C A rs141847266 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGAC < 41bp 1 0.408725911430277 1 0.507359266281128 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459841 stopgain 0.095 1 40 hm5C_associated_SNPs_7621 0 0 0 0 1 Cytosol 1 0.500231643921569 0.985281467437744 0.999536712156861 hm5C_site_10291 DeepMRMD:0.985281467437744;iRNA_m5C:0.999536712156861 10292 chr7 142459841 142459841 1 + C A rs141847266 142459825 + 142459805 142459845 41 TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCA TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGACTCA < 41bp 1 0.38166457533015 1 0.100578367710114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459825 chr7:142459841 stopgain 0.095 1 37 hm5C_associated_SNPs_7622 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10292 DeepMRMD:1;iRNA_m5C:0.999536712157815 10293 chr7 142459841 142459841 1 + C A rs141847266 142459826 + 142459806 142459846 41 CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCAT CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGACTCAT < 41bp 1 0.621149655989002 1 0.27783340215683 experiment 0.757700688021996 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459826 chr7:142459841 stopgain 0.095 1 36 hm5C_associated_SNPs_7623 0 0 0 0 1 Cytosol 1 0.500231714820412 1 0.999536570359176 hm5C_site_10293 DeepMRMD:1;iRNA_m5C:0.999536570359176 10294 chr7 142459841 142459841 1 + C A rs141847266 142459828 + 142459808 142459848 41 GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCT GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGACTCATCT < 41bp 1 0.645477728998596 1 0.243779242038727 experiment 0.709044542002807 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459828 chr7:142459841 stopgain 0.095 1 34 hm5C_associated_SNPs_7624 0 0 0 0 1 Cytosol 1 0.500231506018389 1 0.999536987963223 hm5C_site_10294 DeepMRMD:1;iRNA_m5C:0.999536987963223 10295 chr7 142459841 142459841 1 + C A rs141847266 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTCCAGCCACTGGCACGAAGTGACTCATCTCTGGCT < 41bp 1 0.637863723721341 1 0.1578688621521 experiment 0.724272552557318 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459841 stopgain 0.095 1 28 hm5C_associated_SNPs_7625 0 0 0 0 1 Cytosol 1 0.500231631252645 1 0.99953673749471 hm5C_site_10295 DeepMRMD:1;iRNA_m5C:0.99953673749471 10296 chr7 142459841 142459841 1 + C A rs141847266 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAGTGACTCATCTCTGGCTGGGGCAAC < 41bp 1 0.491548266352499 1 0.0375534892082214 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459841 stopgain 0.095 1 20 hm5C_associated_SNPs_7626 0 0 0 0 1 Cytosol 1 0.500231643921104 1 0.999536712157793 hm5C_site_10296 DeepMRMD:1;iRNA_m5C:0.999536712157793 10297 chr7 142459841 142459841 1 + C A rs141847266 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAGTGACTCATCTCTGGCTGGGGCAACAC < 41bp 1 0.578578276393407 1 0.0167372226715088 experiment 0.842843447213185 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459841 stopgain 0.095 1 18 hm5C_associated_SNPs_7627 0 0 0 0 1 Cytosol 1 0.500231643920795 1 0.999536712158409 hm5C_site_10297 DeepMRMD:1;iRNA_m5C:0.999536712158409 10298 chr7 142460313 142460313 1 + T C rs6666 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGACGC < 41bp 1 0.406253899841132 1 0.643240809440613 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460313 synonymous SNV . 0 39 hm5C_associated_SNPs_7629 2 0 0 0 1 Cytosol 1 0.500229695370895 0.713518381118774 0.99954060925821 hm5C_site_10298 DeepMRMD:0.713518381118774;iRNA_m5C:0.99954060925821 Hereditary pancreatitis Hereditary pancreatitis 10299 chr7 142460313 142460313 1 + T C rs6666 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGACGCTCCT < 41bp 1 0.676885665575415 1 0.259492725133896 experiment 0.64622866884917 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460313 synonymous SNV . 0 35 hm5C_associated_SNPs_7630 2 0 0 0 1 Cytosol 1 0.500231631433849 1 0.999536737132301 hm5C_site_10299 DeepMRMD:1;iRNA_m5C:0.999536737132301 Hereditary pancreatitis Hereditary pancreatitis 10300 chr7 142460313 142460313 1 + T C rs6666 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCCTGGACGCTCCTGTG < 41bp 1 0.267759009699673 1 0.150490939617157 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460313 synonymous SNV . 0 32 hm5C_associated_SNPs_7631 2 0 0 0 1 Cytosol 1 0.500231643795097 1 0.999536712409807 hm5C_site_10300 DeepMRMD:1;iRNA_m5C:0.999536712409807 Hereditary pancreatitis Hereditary pancreatitis 10301 chr7 142460313 142460313 1 + T C rs6666 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGACGCTCCTGTGCTGAG < 41bp 1 0.175151852786788 1 0.167774438858032 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460313 synonymous SNV . 0 27 hm5C_associated_SNPs_7632 2 0 0 0 1 Cytosol 1 0.500238237595075 1 0.99952352480985 hm5C_site_10301 DeepMRMD:1;iRNA_m5C:0.99952352480985 Hereditary pancreatitis Hereditary pancreatitis 10302 chr7 142460313 142460313 1 + T C rs6666 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGACGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.454526266693577 1 0.321734607219696 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460313 synonymous SNV . 0 19 hm5C_associated_SNPs_7633 2 0 0 0 1 Cytosol 1 0.500232104741517 1 0.999535790516966 hm5C_site_10302 DeepMRMD:1;iRNA_m5C:0.999535790516966 Hereditary pancreatitis Hereditary pancreatitis 10303 chr7 142460313 142460313 1 + T C rs6666 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGACGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.188069858777767 1 0.358779191970825 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460313 synonymous SNV . 0 17 hm5C_associated_SNPs_7634 2 0 0 0 1 Cytosol 1 0.500231673421753 1 0.999536653156493 hm5C_site_10303 DeepMRMD:1;iRNA_m5C:0.999536653156493 Hereditary pancreatitis Hereditary pancreatitis 10304 chr7 142460313 142460313 1 + T C rs6666 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGACGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.454859955944743 1 0.146195262670517 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460313 synonymous SNV . 0 16 hm5C_associated_SNPs_7635 2 0 0 0 1 Cytosol 1 0.500231643927557 1 0.999536712144885 hm5C_site_10304 DeepMRMD:1;iRNA_m5C:0.999536712144885 Hereditary pancreatitis Hereditary pancreatitis 10305 chr7 142460313 142460313 1 + T C rs6666 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGACGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.517053558975489 1 0.0758571326732635 experiment 0.965892882049022 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460313 synonymous SNV . 0 11 hm5C_associated_SNPs_7636 2 0 0 0 1 Cytosol 1 0.500231643920928 1 0.999536712158143 hm5C_site_10305 DeepMRMD:1;iRNA_m5C:0.999536712158143 Hereditary pancreatitis Hereditary pancreatitis 10306 chr7 142460313 142460313 1 + T C rs6666 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGACGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.360834460012183 1 0.220748424530029 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460313 synonymous SNV . 0 6 hm5C_associated_SNPs_7637 2 0 0 0 1 Cytosol 1 0.500231644469141 1 0.999536711061718 hm5C_site_10306 DeepMRMD:1;iRNA_m5C:0.999536711061718 Hereditary pancreatitis Hereditary pancreatitis 10307 chr7 142460313 142460313 1 + T C rs6666 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGACGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.560293894795666 1 0.674155116081238 experiment 0.879412210408669 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460313 synonymous SNV . 0 5 hm5C_associated_SNPs_7638 2 0 0 0 1 Cytosol 1 0.50023164873127 0.651689767837524 0.999536702537461 hm5C_site_10307 DeepMRMD:0.651689767837524;iRNA_m5C:0.999536702537461 Hereditary pancreatitis Hereditary pancreatitis 10308 chr7 142460313 142460313 1 + T C rs6666 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC CGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.399015506183389 1 0.13581782579422 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460313 synonymous SNV . 0 1 hm5C_associated_SNPs_7639 2 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_10308 DeepMRMD:1;iRNA_m5C:0.999536712157814 Hereditary pancreatitis Hereditary pancreatitis 10309 chr7 142460335 142460335 1 + A G rs201550522 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTG < 41bp 1 0.449241167385288 1 0.300190389156342 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460335 nonsynonymous SNV 0.000 1 41 hm5C_associated_SNPs_7640 0 0 0 0 2 Cytosol 1 0.50023235824043 1 0.99953528351914 hm5C_site_10309 DeepMRMD:1;iRNA_m5C:0.99953528351914 10310 chr7 142460335 142460335 1 + A G rs201550522 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTGAG < 41bp 1 0.247788331488896 1 0.380769908428192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460335 nonsynonymous SNV 0.000 1 39 hm5C_associated_SNPs_7641 0 0 0 0 2 Cytosol 1 0.500231646658761 1 0.999536706682477 hm5C_site_10310 DeepMRMD:1;iRNA_m5C:0.999536706682477 10311 chr7 142460335 142460335 1 + A G rs201550522 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTGAGT < 41bp 1 0.490385129952242 1 0.272218465805054 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460335 nonsynonymous SNV 0.000 1 38 hm5C_associated_SNPs_7642 0 0 0 0 2 Cytosol 1 0.500231644777271 1 0.999536710445457 hm5C_site_10311 DeepMRMD:1;iRNA_m5C:0.999536710445457 10312 chr7 142460335 142460335 1 + A G rs201550522 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTGAGTGTGAA < 41bp 1 0.502470946410802 1 0.0558144152164459 experiment 0.995058107178397 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460335 nonsynonymous SNV 0.000 1 33 hm5C_associated_SNPs_7643 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10312 DeepMRMD:1;iRNA_m5C:0.999536712157815 10313 chr7 142460335 142460335 1 + A G rs201550522 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAGCCAGGCTGAGTGTGAAGCCTC < 41bp 1 0.375244448861656 1 0.108085751533508 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460335 nonsynonymous SNV 0.000 1 28 hm5C_associated_SNPs_7644 0 0 0 0 2 Cytosol 1 0.500231643933447 1 0.999536712133106 hm5C_site_10313 DeepMRMD:1;iRNA_m5C:0.999536712133106 10314 chr7 142460335 142460335 1 + A G rs201550522 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAGCCAGGCTGAGTGTGAAGCCTCC < 41bp 1 0.531843226739507 1 0.446982085704803 experiment 0.936313546520986 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460335 nonsynonymous SNV 0.000 1 27 hm5C_associated_SNPs_7645 0 0 0 0 2 Cytosol 1 0.500123704014222 1 0.999752591971556 hm5C_site_10314 DeepMRMD:1;iRNA_m5C:0.999752591971556 10315 chr7 142460335 142460335 1 + A G rs201550522 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCAGGCTGAGTGTGAAGCCTCCTACC < 41bp 1 0.560251429593057 1 0.167164117097855 experiment 0.879497140813886 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460335 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_7646 0 0 0 0 2 Cytosol 1 0.50023164392063 1 0.999536712158741 hm5C_site_10315 DeepMRMD:1;iRNA_m5C:0.999536712158741 10316 chr7 142460335 142460335 1 + A G rs201550522 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0433724807598017 1 0.139708191156387 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460335 nonsynonymous SNV 0.000 1 11 hm5C_associated_SNPs_7647 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10316 DeepMRMD:1;iRNA_m5C:0.999536712157815 10317 chr7 142460335 142460335 1 + A G rs201550522 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.298542530591312 1 0.487904608249664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460335 nonsynonymous SNV 0.000 1 10 hm5C_associated_SNPs_7648 0 0 0 0 2 Cytosol 1 0.500231744546969 1 0.999536510906062 hm5C_site_10317 DeepMRMD:1;iRNA_m5C:0.999536510906062 10318 chr7 142460335 142460335 1 + A G rs201550522 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA < 41bp 1 0.0244266386414872 1 0.0842559039592743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460335 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_7649 0 0 0 0 2 Cytosol 1 0.50023164372571 1 0.99953671254858 hm5C_site_10318 DeepMRMD:1;iRNA_m5C:0.99953671254858 10319 chr7 142460335 142460335 1 + A G rs201550522 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG < 41bp 1 0.195177901325939 1 0.135015100240707 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460335 nonsynonymous SNV 0.000 1 7 hm5C_associated_SNPs_7650 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10319 DeepMRMD:1;iRNA_m5C:0.999536712157815 10320 chr7 142460335 142460335 1 + A G rs201550522 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA < 41bp 1 0.376313303653126 1 0.447751402854919 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460335 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_7651 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10320 DeepMRMD:1;iRNA_m5C:0.999536712157815 10321 chr7 142460335 142460335 1 + A G rs201550522 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTGAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC < 41bp 1 0.312555597611984 1 0.621432721614838 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460335 nonsynonymous SNV 0.000 1 3 hm5C_associated_SNPs_7652 0 0 0 0 2 Cytosol 1 0.500231643921092 0.757134556770324 0.999536712157815 hm5C_site_10321 DeepMRMD:0.757134556770324;iRNA_m5C:0.999536712157815 10322 chr7 142460394 142460394 1 + T C rs377124851 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTCGAGGG < 41bp 1 0.388880867993066 1 0.252645611763 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460394 synonymous SNV . 0 36 hm5C_associated_SNPs_7653 1 0 0 0 1 Cytosol 1 0.500231643920939 1 0.999536712158122 hm5C_site_10322 DeepMRMD:1;iRNA_m5C:0.999536712158122 Hereditary pancreatitis Hereditary pancreatitis 10323 chr7 142460394 142460394 1 + T C rs377124851 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTCTGTGTGGGCTTCCTCGAGGGAGGCAAGGA < 41bp 1 0.104188703463399 1 0.047391951084137 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460394 synonymous SNV . 0 27 hm5C_associated_SNPs_7654 1 0 0 0 1 Cytosol 1 0.500234435335684 1 0.999531129328632 hm5C_site_10323 DeepMRMD:1;iRNA_m5C:0.999531129328632 Hereditary pancreatitis Hereditary pancreatitis 10324 chr7 142460394 142460394 1 + T C rs377124851 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTCTGTGTGGGCTTCCTCGAGGGAGGCAAGGATTC < 41bp 1 0.0774010058940439 1 0.183925777673721 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460394 synonymous SNV . 0 24 hm5C_associated_SNPs_7655 1 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10324 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 10325 chr7 142460394 142460394 1 + T C rs377124851 142460403 + 142460383 142460423 41 GTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGTGAT GTGGGCTTCCTCGAGGGAGGCAAGGATTCATGTCAGGTGAT < 41bp 1 0.576131448224054 1 0.486284077167511 experiment 0.847737103551893 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460403 chr7:142460394 synonymous SNV . 0 12 hm5C_associated_SNPs_7656 1 0 0 0 1 Cytosol 1 0.500231643920824 1 0.999536712158353 hm5C_site_10325 DeepMRMD:1;iRNA_m5C:0.999536712158353 Hereditary pancreatitis Hereditary pancreatitis 10326 chr7 142460394 142460394 1 + T C rs377124851 142460411 + 142460391 142460431 41 CCTTGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA CCTCGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA < 41bp 1 0.533209419866781 1 0.291917592287064 experiment 0.933581160266438 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460411 chr7:142460394 synonymous SNV . 0 4 hm5C_associated_SNPs_7657 1 0 0 0 1 Cytosol 1 0.500231643921083 1 0.999536712157834 hm5C_site_10326 DeepMRMD:1;iRNA_m5C:0.999536712157834 Hereditary pancreatitis Hereditary pancreatitis 10327 chr7 142460750 142460750 1 + G C rs189270875 142460733 + 142460713 142460753 41 CCCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACA CCCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGCACA < 41bp 1 0.100610028133324 1 0.0910336077213287 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460733 chr7:142460750 nonsynonymous SNV 0.009 5 38 hm5C_associated_SNPs_7658 2 0 0 0 0 Cytosol 1 0.500233426031804 1 0.999533147936392 hm5C_site_10327 DeepMRMD:1;iRNA_m5C:0.999533147936392 not specified not specified 10328 chr7 142460750 142460750 1 + G C rs189270875 142460734 + 142460714 142460754 41 CCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAG CCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGCACAG < 41bp 1 0.108095653242716 1 0.115667879581451 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460734 chr7:142460750 nonsynonymous SNV 0.009 5 37 hm5C_associated_SNPs_7659 2 0 0 0 0 Cytosol 1 0.500231669588836 1 0.999536660822328 hm5C_site_10328 DeepMRMD:1;iRNA_m5C:0.999536660822328 not specified not specified 10329 chr7 142460750 142460750 1 + G C rs189270875 142460735 + 142460715 142460755 41 CCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGC CCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGCACAGC < 41bp 1 0.47187063514211 1 0.228127956390381 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460735 chr7:142460750 nonsynonymous SNV 0.009 5 36 hm5C_associated_SNPs_7660 2 0 0 0 0 Cytosol 1 0.500235786536657 1 0.999528426926685 hm5C_site_10329 DeepMRMD:1;iRNA_m5C:0.999528426926685 not specified not specified 10330 chr7 142460750 142460750 1 + G C rs189270875 142460745 + 142460725 142460765 41 TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGT TCTGGTGGCCCTGTGGTCTGCAATGCACAGCTCCAAGGAGT < 41bp 1 0.327000208664685 1 0.0750491917133331 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460745 chr7:142460750 nonsynonymous SNV 0.009 5 26 hm5C_associated_SNPs_7661 2 0 0 0 0 Cytosol 1 0.500231643925551 1 0.999536712148897 hm5C_site_10330 DeepMRMD:1;iRNA_m5C:0.999536712148897 not specified not specified 10331 chr7 142460750 142460750 1 + G C rs189270875 142460757 + 142460737 142460777 41 GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG GTGGTCTGCAATGCACAGCTCCAAGGAGTTGTCTCCTGGGG < 41bp 1 0.260905746679704 1 0.428940623998642 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460757 chr7:142460750 nonsynonymous SNV 0.009 5 14 hm5C_associated_SNPs_7662 2 0 0 0 0 Cytosol 1 0.500231643877194 1 0.999536712245612 hm5C_site_10331 DeepMRMD:1;iRNA_m5C:0.999536712245612 not specified not specified 10332 chr7 142460750 142460750 1 + G C rs189270875 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTCTGCAATGCACAGCTCCAAGGAGTTGTCTCCTGGGGT < 41bp 1 0.430233268230852 1 0.342211931943893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460750 nonsynonymous SNV 0.009 5 13 hm5C_associated_SNPs_7663 2 0 0 0 0 Cytosol 1 0.500231642676259 1 0.999536714647481 hm5C_site_10332 DeepMRMD:1;iRNA_m5C:0.999536714647481 not specified not specified 10333 chr7 142460750 142460750 1 + G C rs189270875 142460769 + 142460749 142460789 41 GGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC GCACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC < 41bp 1 0.642995178365921 1 0.763386011123657 experiment 0.714009643268157 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460769 chr7:142460750 nonsynonymous SNV 0.009 5 2 hm5C_associated_SNPs_7664 2 0 0 0 0 Cytosol 1 0.500231643921066 0.473227977752686 0.999536712157868 hm5C_site_10333 DeepMRMD:0.473227977752686;iRNA_m5C:0.999536712157868 not specified not specified 10334 chr7 143080060 143080060 1 + A G rs11978404 143080053 + 143080033 143080073 41 CTCCGGCTCAGAGCCAGACACAGTTCCATGTTCAGCCCCAG CTCCGGCTCAGAGCCAGACACAGTTCCGTGTTCAGCCCCAG < 41bp 1 0.337101835813964 1 0.274206697940826 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZYX ENSG00000159840 CDS Human protein_coding chr7:143080053 chr7:143080060 nonsynonymous SNV 0.129 0 28 hm5C_associated_SNPs_7666 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_10334 DeepMRMD:1;iRNA_m5C:0.999536712157814 10335 chr7 143080323 143080323 1 + C A rs142720695 143080316 + 143080296 143080336 41 CTTTCTGCTGGCACAGGCTCCCCTCAACCTCCCAGCTTCAC CTTTCTGCTGGCACAGGCTCCCCTCAAACTCCCAGCTTCAC < 41bp 1 0.0291689172535378 1 0.0357969999313354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZYX ENSG00000159840 CDS Human protein_coding chr7:143080316 chr7:143080323 nonsynonymous SNV 0.598 2 28 hm5C_associated_SNPs_7667 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_10335 DeepMRMD:1;iRNA_m5C:0.999536712157813 10336 chr7 148395986 148395986 1 + C G rs565460200 148396003 + 148395983 148396023 41 GCACGCAGCTCCAGGCGGGGCAGCCCCGGTAGCTGAGGGAC GCAGGCAGCTCCAGGCGGGGCAGCCCCGGTAGCTGAGGGAC < 41bp 1 0.525314717744779 1 0.271630078554153 experiment 0.949370564510441 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUL1 ENSG00000055130 intronic Human protein_coding chr7:148396003 chr7:148395986 . . 0 4 hm5C_associated_SNPs_7668 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10336 DeepMRMD:1;iRNA_m5C:0.999536712157815 10337 chr7 148844735 148844735 1 + G T rs139320278 148844745 + 148844725 148844765 41 GGCGCCGCCTGTGGAGAGGACCCGGCGGCCGGGCCTGCTTG GGCGCCGCCTTTGGAGAGGACCCGGCGGCCGGGCCTGCTTG < 41bp 1 0.693705428372499 1 0.703346014022827 experiment 0.612589143255002 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF398 ENSG00000197024 UTR5 Human protein_coding chr7:148844745 chr7:148844735 . . 0 11 hm5C_associated_SNPs_7669 0 0 1 0 0 chromatin 1 0.500231643921086 0.593307971954346 0.999536712157829 hm5C_site_10337 DeepMRMD:0.593307971954346;iRNA_m5C:0.999536712157829 10338 chr7 148979323 148979323 1 + C A rs61735518 148979322 + 148979302 148979342 41 CAACCGCAACCACCACCTGGCCGTGCACATGCAGACCCACG CAACCGCAACCACCACCTGGCAGTGCACATGCAGACCCACG < 41bp 1 0.170923192218272 1 0.174970149993896 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148979322 chr7:148979323 synonymous SNV . 0 22 hm5C_associated_SNPs_7671 0 0 0 0 0 chromatin 1 0.500231730221406 1 0.999536539557188 hm5C_site_10338 DeepMRMD:1;iRNA_m5C:0.999536539557188 10339 chr7 148979360 148979360 1 + C T rs573328772 148979350 + 148979330 148979370 41 ATGCAGACCCACGCCCGAGGCCAGGTGGGCCCACACTTCCC ATGCAGACCCACGCCCGAGGCCAGGTGGGCTCACACTTCCC < 41bp 1 0.428372010729736 1 0.30122572183609 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148979350 chr7:148979360 nonsynonymous SNV 0.005 1 31 hm5C_associated_SNPs_7672 0 0 1 0 0 chromatin 1 0.500231643850572 1 0.999536712298856 hm5C_site_10339 DeepMRMD:1;iRNA_m5C:0.999536712298856 10340 chr7 148979360 148979360 1 + C T rs573328772 148979351 + 148979331 148979371 41 TGCAGACCCACGCCCGAGGCCAGGTGGGCCCACACTTCCCT TGCAGACCCACGCCCGAGGCCAGGTGGGCTCACACTTCCCT < 41bp 1 0.500039620943302 1 0.464245468378067 experiment 0.999920758113396 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148979351 chr7:148979360 nonsynonymous SNV 0.005 1 30 hm5C_associated_SNPs_7673 0 0 1 0 0 chromatin 1 0.500231643920936 1 0.999536712158128 hm5C_site_10340 DeepMRMD:1;iRNA_m5C:0.999536712158128 10341 chr7 148980193 148980193 1 + C G rs112530054 148980206 + 148980186 148980226 41 TGAGTAGCTGGGATTACAGGCGCCCACCACCACTCCCGGCT TGAGTAGGTGGGATTACAGGCGCCCACCACCACTCCCGGCT < 41bp 1 0.267567397216851 1 0.719588160514832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF783 ENSG00000204946 UTR3 Human protein_coding chr7:148980206 chr7:148980193 . . 0 8 hm5C_associated_SNPs_7674 0 0 0 0 0 chromatin 1 0.500231643921092 0.560823678970336 0.999536712157815 hm5C_site_10341 DeepMRMD:0.560823678970336;iRNA_m5C:0.999536712157815 10342 chr7 148980193 148980193 1 + C G rs112530054 148980208 + 148980188 148980228 41 AGTAGCTGGGATTACAGGCGCCCACCACCACTCCCGGCTAA AGTAGGTGGGATTACAGGCGCCCACCACCACTCCCGGCTAA < 41bp 1 0.145739923523968 1 0.394609868526459 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF783 ENSG00000204946 UTR3 Human protein_coding chr7:148980208 chr7:148980193 . . 0 6 hm5C_associated_SNPs_7675 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_10342 DeepMRMD:1;iRNA_m5C:0.999536712157815 10343 chr7 148980222 148980222 1 + C T rs34760947 148980206 + 148980186 148980226 41 TGAGTAGCTGGGATTACAGGCGCCCACCACCACTCCCGGCT TGAGTAGCTGGGATTACAGGCGCCCACCACCACTCCTGGCT < 41bp 1 0.190219409777123 1 0.680728375911713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF783 ENSG00000204946 UTR3 Human protein_coding chr7:148980206 chr7:148980222 . . 0 37 hm5C_associated_SNPs_7676 0 0 0 0 0 chromatin 1 0.500231571097482 0.638543248176574 0.999536857805036 hm5C_site_10343 DeepMRMD:0.638543248176574;iRNA_m5C:0.999536857805036 10344 chr7 148980222 148980222 1 + C T rs34760947 148980208 + 148980188 148980228 41 AGTAGCTGGGATTACAGGCGCCCACCACCACTCCCGGCTAA AGTAGCTGGGATTACAGGCGCCCACCACCACTCCTGGCTAA < 41bp 1 0.135040495232948 1 0.406224012374878 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF783 ENSG00000204946 UTR3 Human protein_coding chr7:148980208 chr7:148980222 . . 0 35 hm5C_associated_SNPs_7677 0 0 0 0 0 chromatin 1 0.500231643921883 1 0.999536712156234 hm5C_site_10344 DeepMRMD:1;iRNA_m5C:0.999536712156234 10345 chr7 148990909 148990909 1 + A G rs541975721 148990895 + 148990875 148990915 41 AATGCATGAGACACAGATTCCACTCAGGAGAGAGAAGACGA AATGCATGAGACACAGATTCCACTCAGGAGAGAGGAGACGA < 41bp 1 0.154347954822507 1 0.0535017549991608 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC155060 ENSG00000204946 CDS Human protein_coding chr7:148990895 chr7:148990909 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_7678 0 0 1 0 1 unknown 1 0.500231625738957 1 0.999536748522087 hm5C_site_10345 DeepMRMD:1;iRNA_m5C:0.999536748522087 10346 chr7 149007286 149007286 1 + C A rs112067002 149007291 + 149007271 149007311 41 AATGGCAGCAGGGGGCATAGCTCAGTGGTAGAGCATTTGAC AATGGCAGCAGGGGGAATAGCTCAGTGGTAGAGCATTTGAC < 41bp 1 0.565757536382171 1 0.822897732257843 experiment 0.868484927235659 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC155060;ZNF777 ENSG00000244560;ENSG00000231397 intergenic Human other chr7:149007291 chr7:149007286 . . 0 16 hm5C_associated_SNPs_7679 0 0 1 0 0 unknown 1 0.500231643879519 0.354204535484314 0.999536712240962 hm5C_site_10346 DeepMRMD:0.354204535484314;iRNA_m5C:0.999536712240962 10347 chr7 149007286 149007286 1 + C A rs112067002 149007293 + 149007273 149007313 41 TGGCAGCAGGGGGCATAGCTCAGTGGTAGAGCATTTGACTG TGGCAGCAGGGGGAATAGCTCAGTGGTAGAGCATTTGACTG < 41bp 1 0.668773295043673 1 0.495133459568024 experiment 0.662453409912653 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC155060;ZNF777 ENSG00000244560;ENSG00000231397 intergenic Human other chr7:149007293 chr7:149007286 . . 0 14 hm5C_associated_SNPs_7680 0 0 1 0 0 unknown 1 0.500231643887928 1 0.999536712224145 hm5C_site_10347 DeepMRMD:1;iRNA_m5C:0.999536712224145 10348 chr7 149007286 149007286 1 + C A rs112067002 149007304 + 149007284 149007324 41 GGCATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAG GGAATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAG < 41bp 1 0.0879684710821995 1 0.0696504712104797 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC155060;ZNF777 ENSG00000244560;ENSG00000231397 intergenic Human other chr7:149007304 chr7:149007286 . . 0 3 hm5C_associated_SNPs_7681 0 0 1 0 0 unknown 1 0.500231643921089 1 0.999536712157822 hm5C_site_10348 DeepMRMD:1;iRNA_m5C:0.999536712157822 10349 chr7 149007344 149007344 1 + G C rs886713 149007328 + 149007308 149007348 41 TGACTGCAGATCAAGAGGTCCCTGGTTCAAATCCAGGTGCC TGACTGCAGATCAAGAGGTCCCTGGTTCAAATCCAGCTGCC < 41bp 1 0.174521173484198 1 0.100360721349716 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC155060;ZNF777 ENSG00000244560;ENSG00000231397 intergenic Human other chr7:149007328 chr7:149007344 . . 0 37 hm5C_associated_SNPs_7682 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10349 DeepMRMD:1;iRNA_m5C:0.999536712157815 10350 chr7 149361933 149361933 1 + T G rs184037429 149361925 + 149361905 149361945 41 CACCAGGCAAGGGGGTATAGCTCACAGGTAGAGCATTTGAC CACCAGGCAAGGGGGTATAGCTCACAGGGAGAGCATTTGAC < 41bp 1 0.193185958874778 1 0.0708199739456177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF767P;KRBA1 ENSG00000133624;ENSG00000133619 intergenic Human other chr7:149361925 chr7:149361933 . . 0 29 hm5C_associated_SNPs_7684 0 0 0 0 0 unknown 1 0.500231644272344 1 0.999536711455312 hm5C_site_10350 DeepMRMD:1;iRNA_m5C:0.999536711455312 10351 chr7 149419635 149419635 1 + T G rs75701347 149419643 + 149419623 149419663 41 GAGAGAGGGACCTCAGAGGCCGGTGAGAGGCGGGCTTTCCT GAGAGAGGGACCGCAGAGGCCGGTGAGAGGCGGGCTTTCCT < 41bp 1 0.412549931293135 1 0.462305575609207 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149419643 chr7:149419635 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_7686 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10351 DeepMRMD:1;iRNA_m5C:0.999536712157815 10352 chr7 150034703 150034703 1 + G A rs149223172 150034708 + 150034688 150034728 41 GGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCT GGTACTCAGCTCTGCAGGCCCCACCTCTTCCTTCGTCTTCT < 41bp 1 0.213885037449964 1 0.0291200578212738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRRC61 ENSG00000127399 CDS Human protein_coding chr7:150034708 chr7:150034703 synonymous SNV . 0 16 hm5C_associated_SNPs_7687 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10352 DeepMRMD:1;iRNA_m5C:0.999536712157815 10353 chr7 150034722 150034722 1 + G A rs75914222 150034708 + 150034688 150034728 41 GGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCT GGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCATCTTCT < 41bp 1 0.21539591663362 1 0.0460728406906128 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRRC61 ENSG00000127399 CDS Human protein_coding chr7:150034708 chr7:150034722 nonsynonymous SNV 0.145 1 35 hm5C_associated_SNPs_7688 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10353 DeepMRMD:1;iRNA_m5C:0.999536712157815 10354 chr7 150068620 150068620 1 + C A rs17173703 150068639 + 150068619 150068659 41 GCCCCCTTCTTAGCACTGCACCGCCAGGTCCATGCTGCTGC GACCCCTTCTTAGCACTGCACCGCCAGGTCCATGCTGCTGC < 41bp 1 0.227600281525454 1 0.0357639491558075 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150068639 chr7:150068620 nonsynonymous SNV 0.349 0 2 hm5C_associated_SNPs_7689 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921068 1 0.999536712157863 hm5C_site_10354 DeepMRMD:1;iRNA_m5C:0.999536712157863 10355 chr7 150068981 150068981 1 + G A rs149624173 150068970 + 150068950 150068990 41 CCGCAGCCAAGGCTCTGGGGCCCCGGCCCAGGGGCCGCCCC CCGCAGCCAAGGCTCTGGGGCCCCGGCCCAGAGGCCGCCCC < 41bp 1 0.540990463571641 1 0.0762514472007751 experiment 0.918019072856717 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150068970 chr7:150068981 synonymous SNV . 0 32 hm5C_associated_SNPs_7690 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10355 DeepMRMD:1;iRNA_m5C:0.999536712157815 10356 chr7 150068981 150068981 1 + G A rs149624173 150068972 + 150068952 150068992 41 GCAGCCAAGGCTCTGGGGCCCCGGCCCAGGGGCCGCCCCGC GCAGCCAAGGCTCTGGGGCCCCGGCCCAGAGGCCGCCCCGC < 41bp 1 0.689385465747804 1 0.529146552085876 experiment 0.621229068504393 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150068972 chr7:150068981 synonymous SNV . 0 30 hm5C_associated_SNPs_7692 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.941706895828248 0.999536712157815 hm5C_site_10356 DeepMRMD:0.941706895828248;iRNA_m5C:0.999536712157815 10357 chr7 150068981 150068981 1 + G A rs149624173 150068984 + 150068964 150069004 41 CTGGGGCCCCGGCCCAGGGGCCGCCCCGCGGTGACCGCCCC CTGGGGCCCCGGCCCAGAGGCCGCCCCGCGGTGACCGCCCC < 41bp 1 0.40910881529266 1 0.377656877040863 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150068984 chr7:150068981 synonymous SNV . 0 18 hm5C_associated_SNPs_7694 0 0 1 0 0 Endoplasmic reticulum 1 0.500232986415459 1 0.999534027169083 hm5C_site_10357 DeepMRMD:1;iRNA_m5C:0.999534027169083 10358 chr7 150783903 150783903 1 + T A rs555651682 150783900 + 150783880 150783920 41 GCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTCGT GCGGCTCCGGGGGGCGGCGGCGCAGCCGCGCAGCAGCTCGT < 41bp 1 0.690285507424137 1 0.665224075317383 experiment 0.619428985151726 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150783900 chr7:150783903 synonymous SNV . 0 24 hm5C_associated_SNPs_7697 0 0 0 0 0 Cytosol 1 0.500231643921092 0.669551849365234 0.999536712157815 hm5C_site_10358 DeepMRMD:0.669551849365234;iRNA_m5C:0.999536712157815 10359 chr7 150783906 150783906 1 + C A rs572361798 150783900 + 150783880 150783920 41 GCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTCGT GCGGCTCCGGGGGGCGGCGGCGCTGCAGCGCAGCAGCTCGT < 41bp 1 0.574553739135553 1 0.542511343955994 experiment 0.850892521728893 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150783900 chr7:150783906 synonymous SNV . 0 27 hm5C_associated_SNPs_7700 0 0 0 0 0 Cytosol 1 0.500231643921093 0.914977312088012 0.999536712157814 hm5C_site_10359 DeepMRMD:0.914977312088012;iRNA_m5C:0.999536712157814 10360 chr7 150812565 150812565 1 + C T rs183535982 150812557 + 150812537 150812577 41 CCTTCCCCAGCCGCCGCGACCTGCTGGGCTCCGACGCCCCG CCTTCCCCAGCCGCCGCGACCTGCTGGGTTCCGACGCCCCG < 41bp 1 0.58510771498666 1 0.131549000740051 experiment 0.829784570026681 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150812557 chr7:150812565 synonymous SNV . 0 29 hm5C_associated_SNPs_7701 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10360 DeepMRMD:1;iRNA_m5C:0.999536712157815 10361 chr7 150838038 150838038 1 + C T rs79090380 150838058 + 150838038 150838078 41 CCCTGAGAGCAAGGGCCCAGCAGAGGAGGAATTCCAGGGGA TCCTGAGAGCAAGGGCCCAGCAGAGGAGGAATTCCAGGGGA < 41bp 1 0.641652924954228 1 0.739070415496826 experiment 0.716694150091544 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control AGAP3 ENSG00000133612 intronic Human protein_coding chr7:150838058 chr7:150838038 . . 0 1 hm5C_associated_SNPs_7702 0 0 0 0 0 Cytosol 1 0.500231643921092 0.521859169006348 0.999536712157815 hm5C_site_10361 DeepMRMD:0.521859169006348;iRNA_m5C:0.999536712157815 10362 chr7 150838042 150838042 1 + G A rs546305037 150838058 + 150838038 150838078 41 CCCTGAGAGCAAGGGCCCAGCAGAGGAGGAATTCCAGGGGA CCCTAAGAGCAAGGGCCCAGCAGAGGAGGAATTCCAGGGGA < 41bp 1 0.642903071130779 1 0.756340682506561 experiment 0.714193857738443 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control AGAP3 ENSG00000133612 intronic Human protein_coding chr7:150838058 chr7:150838042 . . 0 5 hm5C_associated_SNPs_7703 0 0 0 0 0 Cytosol 1 0.500231643921092 0.487318634986878 0.999536712157815 hm5C_site_10362 DeepMRMD:0.487318634986878;iRNA_m5C:0.999536712157815 10363 chr7 150838078 150838078 1 + A T rs191127504 150838058 + 150838038 150838078 41 CCCTGAGAGCAAGGGCCCAGCAGAGGAGGAATTCCAGGGGA CCCTGAGAGCAAGGGCCCAGCAGAGGAGGAATTCCAGGGGT < 41bp 1 0.633089250524842 1 0.731088399887085 experiment 0.733821498950316 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control AGAP3 ENSG00000133612 intronic Human protein_coding chr7:150838058 chr7:150838078 . . 0 41 hm5C_associated_SNPs_7704 0 0 0 0 0 Cytosol 1 0.500231643921092 0.53782320022583 0.999536712157815 hm5C_site_10363 DeepMRMD:0.53782320022583;iRNA_m5C:0.999536712157815 10364 chr7 150931154 150931154 1 + G A rs3748101 150931172 + 150931152 150931192 41 GGGCTGTCTCTGGGGTGCAGCCTGAGCCTCCTGCGGGTTTC GGACTGTCTCTGGGGTGCAGCCTGAGCCTCCTGCGGGTTTC < 41bp 1 0.413640374203787 1 0.175524324178696 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150931172 chr7:150931154 synonymous SNV . 0 3 hm5C_associated_SNPs_7705 0 0 1 0 0 Nucleus 1 0.500231643920991 1 0.999536712158018 hm5C_site_10364 DeepMRMD:1;iRNA_m5C:0.999536712158018 10365 chr7 150931154 150931154 1 + G A rs3748101 150931173 + 150931153 150931193 41 GGCTGTCTCTGGGGTGCAGCCTGAGCCTCCTGCGGGTTTCC GACTGTCTCTGGGGTGCAGCCTGAGCCTCCTGCGGGTTTCC < 41bp 1 0.549683899994175 1 0.0936368703842163 experiment 0.90063220001165 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150931173 chr7:150931154 synonymous SNV . 0 2 hm5C_associated_SNPs_7706 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10365 DeepMRMD:1;iRNA_m5C:0.999536712157815 10366 chr7 150933623 150933623 1 + C T rs376421293 150933611 + 150933591 150933631 41 CCGAAGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGC CCGAAGGTACCCTCATGTACCGGCTCCACAAATGCTTCAGC < 41bp 1 0.367919829459576 1 0.275407493114471 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933611 chr7:150933623 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_7707 0 0 1 0 1 Nucleus 1 0.500231646633658 1 0.999536706732683 hm5C_site_10366 DeepMRMD:1;iRNA_m5C:0.999536706732683 10367 chr7 150933623 150933623 1 + C T rs376421293 150933614 + 150933594 150933634 41 AAGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCT AAGGTACCCTCATGTACCGGCTCCACAAATGCTTCAGCGCT < 41bp 1 0.333686025956213 1 0.88405168056488 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933614 chr7:150933623 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_7708 0 0 1 0 1 Nucleus 1 0.500231643386282 0.23189663887024 0.999536713227437 hm5C_site_10367 DeepMRMD:0.23189663887024;iRNA_m5C:0.999536713227437 10368 chr7 150933623 150933623 1 + C T rs376421293 150933616 + 150933596 150933636 41 GGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCTCT GGTACCCTCATGTACCGGCTCCACAAATGCTTCAGCGCTCT < 41bp 1 0.246345177231941 1 0.063422828912735 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933616 chr7:150933623 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_7709 0 0 1 0 1 Nucleus 1 0.500231643921543 1 0.999536712156915 hm5C_site_10368 DeepMRMD:1;iRNA_m5C:0.999536712156915 10369 chr7 150934975 150934975 1 + C A rs2487154 150934974 + 150934954 150934994 41 AGCCCCGGCTTTCCTCGAGGCCTTTGCAGCCAATGTCCTGG AGCCCCGGCTTTCCTCGAGGCATTTGCAGCCAATGTCCTGG < 41bp 1 0.0499896873680249 1 0.0296366214752197 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150934974 chr7:150934975 synonymous SNV . 0 22 hm5C_associated_SNPs_7710 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10369 DeepMRMD:1;iRNA_m5C:0.999536712157815 10370 chr7 151722908 151722908 1 + G A rs546454494 151722901 + 151722881 151722921 41 TCCTGCGGGTCGGACTGGGGCTGTGGCGGGAGAGAAGATGC TCCTGCGGGTCGGACTGGGGCTGTGGCAGGAGAGAAGATGC < 41bp 1 0.676258088858413 1 0.341240763664246 experiment 0.647483822283173 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT11 ENSG00000178234 UTR5 Human protein_coding chr7:151722901 chr7:151722908 . . 0 28 hm5C_associated_SNPs_7711 0 0 1 0 1 chromatin 1 0.500231643946589 1 0.999536712106822 hm5C_site_10370 DeepMRMD:1;iRNA_m5C:0.999536712106822 10371 chr7 151722908 151722908 1 + G A rs546454494 151722924 + 151722904 151722944 41 TGGCGGGAGAGAAGATGCCGCAGCCCGAGTCCCAGAAGGCG TGGCAGGAGAGAAGATGCCGCAGCCCGAGTCCCAGAAGGCG < 41bp 1 0.344238749111816 1 0.268348902463913 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT11 ENSG00000178234 UTR5 Human protein_coding chr7:151722924 chr7:151722908 . . 0 5 hm5C_associated_SNPs_7712 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_10371 DeepMRMD:1;iRNA_m5C:0.999536712157816 10372 chr7 151722908 151722908 1 + G A rs546454494 151722928 + 151722908 151722948 41 GGGAGAGAAGATGCCGCAGCCCGAGTCCCAGAAGGCGGCGA AGGAGAGAAGATGCCGCAGCCCGAGTCCCAGAAGGCGGCGA < 41bp 1 0.591188193363307 1 0.765236377716064 experiment 0.817623613273387 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT11 ENSG00000178234 UTR5 Human protein_coding chr7:151722928 chr7:151722908 . . 0 1 hm5C_associated_SNPs_7714 0 0 1 0 1 chromatin 1 0.500231644032828 0.469527244567872 0.999536711934343 hm5C_site_10372 DeepMRMD:0.469527244567872;iRNA_m5C:0.999536711934343 10373 chr7 151817987 151817987 1 + C A rs143156028 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCGATCATCAGACCCGCCACGGCTCATGAAATGCCACGGG < 41bp 1 0.462303372154523 1 0.25760406255722 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151817987 synonymous SNV . 0 5 hm5C_associated_SNPs_7715 0 0 1 0 2 chromatin 1 0.50023164392109 1 0.99953671215782 hm5C_site_10373 DeepMRMD:1;iRNA_m5C:0.99953671215782 10374 chr7 155437496 155437496 1 + C A rs76847091 155437502 + 155437482 155437522 41 TCCGTCACCCGTACCCGGGCCCGGACCAGGCACGTCGGCCC TCCGTCACCCGTACACGGGCCCGGACCAGGCACGTCGGCCC < 41bp 1 0.613870409772384 1 0.302464842796326 experiment 0.772259180455232 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBM33 ENSG00000184863 UTR5 Human protein_coding chr7:155437502 chr7:155437496 . . 0 15 hm5C_associated_SNPs_7716 0 0 1 0 0 Nucleus 1 0.500231644849424 1 0.999536710301151 hm5C_site_10374 DeepMRMD:1;iRNA_m5C:0.999536710301151 10375 chr7 155534630 155534630 1 + A G rs559007917 155534638 + 155534618 155534658 41 ATAGAAATGAGCAGCAGCCGCTGCTCTGCCACGCCCTCAGC ATAGAAATGAGCGGCAGCCGCTGCTCTGCCACGCCCTCAGC < 41bp 1 0.521540503304748 1 0.197132885456085 experiment 0.956918993390503 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM33 ENSG00000184863 CDS Human protein_coding chr7:155534638 chr7:155534630 nonsynonymous SNV 0.022 0 13 hm5C_associated_SNPs_7717 0 0 1 0 0 Nucleus 1 0.500231643939962 1 0.999536712120076 hm5C_site_10375 DeepMRMD:1;iRNA_m5C:0.999536712120076 10376 chr7 155534653 155534653 1 + C A rs73167165 155534638 + 155534618 155534658 41 ATAGAAATGAGCAGCAGCCGCTGCTCTGCCACGCCCTCAGC ATAGAAATGAGCAGCAGCCGCTGCTCTGCCACGCCATCAGC < 41bp 1 0.387186229472932 1 0.132803171873093 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM33 ENSG00000184863 CDS Human protein_coding chr7:155534638 chr7:155534653 synonymous SNV . 0 36 hm5C_associated_SNPs_7718 0 0 1 0 0 Nucleus 1 0.500231623953124 1 0.999536752093753 hm5C_site_10376 DeepMRMD:1;iRNA_m5C:0.999536752093753 10377 chr7 155534738 155534738 1 + G A rs75145238 155534723 + 155534703 155534743 41 TGGCGGGTTCCAGAAGCTCACAGGGAAAGACGGAAGTGAAA TGGCGGGTTCCAGAAGCTCACAGGGAAAGACGGAAATGAAA < 41bp 1 0.693735957050916 1 0.36903578042984 experiment 0.612528085898167 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM33 ENSG00000184863 CDS Human protein_coding chr7:155534723 chr7:155534738 nonsynonymous SNV 0.671 0 36 hm5C_associated_SNPs_7719 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10377 DeepMRMD:1;iRNA_m5C:0.999536712157815 10378 chr7 155568550 155568550 1 + A T rs10269841 155568552 + 155568532 155568572 41 GGCCTGAAGGTGGAACAGACCTGTTTTTTTCCTTTTTAAAT GGCCTGAAGGTGGAACAGTCCTGTTTTTTTCCTTTTTAAAT < 41bp 1 0.12337394219062 1 0.0801658928394318 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM33 ENSG00000184863 UTR3 Human protein_coding chr7:155568552 chr7:155568550 . . 0 19 hm5C_associated_SNPs_7720 0 0 1 0 0 Nucleus 1 0.500231643921149 1 0.999536712157701 hm5C_site_10378 DeepMRMD:1;iRNA_m5C:0.999536712157701 10379 chr7 156763339 156763339 1 + A C rs11767045 156763328 + 156763308 156763348 41 GGCTGGTCTTGAACTCCTGACCTCAGGTGATACACCCATCT GGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCATCT < 41bp 1 0.195973091968241 1 0.0399008989334106 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763328 chr7:156763339 . . 0 32 hm5C_associated_SNPs_7721 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10379 DeepMRMD:1;iRNA_m5C:0.999536712157815 10380 chr7 156763339 156763339 1 + A C rs11767045 156763355 + 156763335 156763375 41 TGATACACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAG TGATCCACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.31327070831645 1 0.0669068992137909 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763355 chr7:156763339 . . 0 5 hm5C_associated_SNPs_7722 0 0 0 0 0 Nucleus 1 0.500231643921696 1 0.999536712156609 hm5C_site_10380 DeepMRMD:1;iRNA_m5C:0.999536712156609 10381 chr7 156763339 156763339 1 + A C rs11767045 156763356 + 156763336 156763376 41 GATACACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAGG GATCCACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.33576416295788 1 0.352606296539307 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763356 chr7:156763339 . . 0 4 hm5C_associated_SNPs_7723 0 0 0 0 0 Nucleus 1 0.500231487475568 1 0.999537025048865 hm5C_site_10381 DeepMRMD:1;iRNA_m5C:0.999537025048865 10382 chr7 156763339 156763339 1 + A C rs11767045 156763357 + 156763337 156763377 41 ATACACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAGGC ATCCACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAGGC < 41bp 1 0.533989197623539 1 0.503153026103973 experiment 0.932021604752922 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763357 chr7:156763339 . . 0 3 hm5C_associated_SNPs_7724 0 0 0 0 0 Nucleus 1 0.500231643941747 0.993693947792054 0.999536712116505 hm5C_site_10382 DeepMRMD:0.993693947792054;iRNA_m5C:0.999536712116505 10383 chr7 156763344 156763344 1 + C T rs572249470 156763328 + 156763308 156763348 41 GGCTGGTCTTGAACTCCTGACCTCAGGTGATACACCCATCT GGCTGGTCTTGAACTCCTGACCTCAGGTGATACACCTATCT < 41bp 1 0.175332600318204 1 0.0428462326526642 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763328 chr7:156763344 . . 0 37 hm5C_associated_SNPs_7725 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10383 DeepMRMD:1;iRNA_m5C:0.999536712157815 10384 chr7 156763344 156763344 1 + C T rs572249470 156763355 + 156763335 156763375 41 TGATACACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAG TGATACACCTATCTCGGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.340969185316578 1 0.08332759141922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763355 chr7:156763344 . . 0 10 hm5C_associated_SNPs_7726 0 0 0 0 0 Nucleus 1 0.500231644216086 1 0.999536711567828 hm5C_site_10384 DeepMRMD:1;iRNA_m5C:0.999536711567828 10385 chr7 156763344 156763344 1 + C T rs572249470 156763356 + 156763336 156763376 41 GATACACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAGG GATACACCTATCTCGGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.313805628918796 1 0.25029581785202 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763356 chr7:156763344 . . 0 9 hm5C_associated_SNPs_7727 0 0 0 0 0 Nucleus 1 0.500231643920878 1 0.999536712158243 hm5C_site_10385 DeepMRMD:1;iRNA_m5C:0.999536712158243 10386 chr7 156763344 156763344 1 + C T rs572249470 156763357 + 156763337 156763377 41 ATACACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAGGC ATACACCTATCTCGGCCTCCCAAAGTGCTGGGATTACAGGC < 41bp 1 0.561053920687598 1 0.507568061351776 experiment 0.877892158624804 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763357 chr7:156763344 . . 0 8 hm5C_associated_SNPs_7728 0 0 0 0 0 Nucleus 1 0.500231645909651 0.984863877296448 0.999536708180697 hm5C_site_10386 DeepMRMD:0.984863877296448;iRNA_m5C:0.999536708180697 10387 chr7 156763346 156763346 1 + T C rs35773952 156763328 + 156763308 156763348 41 GGCTGGTCTTGAACTCCTGACCTCAGGTGATACACCCATCT GGCTGGTCTTGAACTCCTGACCTCAGGTGATACACCCACCT < 41bp 1 0.210675442449163 1 0.0569593012332916 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763328 chr7:156763346 . . 0 39 hm5C_associated_SNPs_7729 0 0 0 0 0 Nucleus 1 0.50023164392109 1 0.999536712157819 hm5C_site_10387 DeepMRMD:1;iRNA_m5C:0.999536712157819 10388 chr7 156763346 156763346 1 + T C rs35773952 156763355 + 156763335 156763375 41 TGATACACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAG TGATACACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.351120115596032 1 0.0757946372032166 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763355 chr7:156763346 . . 0 12 hm5C_associated_SNPs_7730 0 0 0 0 0 Nucleus 1 0.500233843744446 1 0.999532312511108 hm5C_site_10388 DeepMRMD:1;iRNA_m5C:0.999532312511108 10389 chr7 156763346 156763346 1 + T C rs35773952 156763356 + 156763336 156763376 41 GATACACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAGG GATACACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.338425285117573 1 0.25135999917984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763356 chr7:156763346 . . 0 11 hm5C_associated_SNPs_7731 0 0 0 0 0 Nucleus 1 0.500231643980343 1 0.999536712039315 hm5C_site_10389 DeepMRMD:1;iRNA_m5C:0.999536712039315 10390 chr7 156763346 156763346 1 + T C rs35773952 156763357 + 156763337 156763377 41 ATACACCCATCTCGGCCTCCCAAAGTGCTGGGATTACAGGC ATACACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGC < 41bp 1 0.514919147785005 1 0.375385165214539 experiment 0.970161704429989 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763357 chr7:156763346 . . 0 10 hm5C_associated_SNPs_7732 0 0 0 0 0 Nucleus 1 0.50025372561782 1 0.999492548764359 hm5C_site_10390 DeepMRMD:1;iRNA_m5C:0.999492548764359 10391 chr7 156763389 156763389 1 + C T rs576261274 156763377 + 156763357 156763397 41 CAAAGTGCTGGGATTACAGGCTTGAGCCACCACGCCCAGCT CAAAGTGCTGGGATTACAGGCTTGAGCCACCATGCCCAGCT < 41bp 1 0.601481591260921 1 0.203274041414261 experiment 0.797036817478159 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NOM1 ENSG00000146909 UTR3 Human protein_coding chr7:156763377 chr7:156763389 . . 0 33 hm5C_associated_SNPs_7733 0 0 0 2 0 Nucleus 1 0.500231643910942 1 0.999536712178115 hm5C_site_10391 DeepMRMD:1;iRNA_m5C:0.999536712178115 10392 chr7 156931907 156931907 1 + G T rs182166882 156931910 + 156931890 156931930 41 CTCCCAGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTCCG CTCCCAGCCCGCCCCGTTCCCCGCCCGCCCGGCTGCTTCCG < 41bp 1 0.510199980789598 1 0.309484899044037 experiment 0.979600038420805 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931910 chr7:156931907 . . 0 18 hm5C_associated_SNPs_7735 0 0 1 0 0 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_10392 DeepMRMD:1;iRNA_m5C:0.999536712157813 10393 chr7 156931907 156931907 1 + G T rs182166882 156931911 + 156931891 156931931 41 TCCCAGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTCCGC TCCCAGCCCGCCCCGTTCCCCGCCCGCCCGGCTGCTTCCGC < 41bp 1 0.692052417320697 1 0.222970277070999 experiment 0.615895165358606 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931911 chr7:156931907 . . 0 17 hm5C_associated_SNPs_7736 0 0 1 0 0 Ribosome 1 0.500231643920906 1 0.999536712158188 hm5C_site_10393 DeepMRMD:1;iRNA_m5C:0.999536712158188 10394 chr7 156931907 156931907 1 + G T rs182166882 156931913 + 156931893 156931933 41 CCAGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTCCGCGG CCAGCCCGCCCCGTTCCCCGCCCGCCCGGCTGCTTCCGCGG < 41bp 1 0.429317367027624 1 0.301189363002777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931913 chr7:156931907 . . 0 15 hm5C_associated_SNPs_7737 0 0 1 0 0 Ribosome 1 0.500231337033344 1 0.999537325933313 hm5C_site_10394 DeepMRMD:1;iRNA_m5C:0.999537325933313 10395 chr7 156931907 156931907 1 + G T rs182166882 156931914 + 156931894 156931934 41 CAGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTCCGCGGC CAGCCCGCCCCGTTCCCCGCCCGCCCGGCTGCTTCCGCGGC < 41bp 1 0.209670455237161 1 0.062591940164566 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931914 chr7:156931907 . . 0 14 hm5C_associated_SNPs_7738 0 0 1 0 0 Ribosome 1 0.500231643585102 1 0.999536712829795 hm5C_site_10395 DeepMRMD:1;iRNA_m5C:0.999536712829795 10396 chr7 156931907 156931907 1 + G T rs182166882 156931915 + 156931895 156931935 41 AGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTCCGCGGCG AGCCCGCCCCGTTCCCCGCCCGCCCGGCTGCTTCCGCGGCG < 41bp 1 0.619138943814185 1 0.271847188472748 experiment 0.76172211237163 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931915 chr7:156931907 . . 0 13 hm5C_associated_SNPs_7739 0 0 1 0 0 Ribosome 1 0.50023164340458 1 0.99953671319084 hm5C_site_10396 DeepMRMD:1;iRNA_m5C:0.99953671319084 10397 chr7 156931907 156931907 1 + G T rs182166882 156931917 + 156931897 156931937 41 CCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTCCGCGGCGGC CCCGCCCCGTTCCCCGCCCGCCCGGCTGCTTCCGCGGCGGC < 41bp 1 0.649257362748205 1 0.342094331979752 experiment 0.70148527450359 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931917 chr7:156931907 . . 0 11 hm5C_associated_SNPs_7740 0 0 1 0 0 Ribosome 1 0.500231619770993 1 0.999536760458014 hm5C_site_10397 DeepMRMD:1;iRNA_m5C:0.999536760458014 10398 chr7 156931907 156931907 1 + G T rs182166882 156931918 + 156931898 156931938 41 CCGCCCCGTGCCCCGCCCGCCCGGCTGCTTCCGCGGCGGCG CCGCCCCGTTCCCCGCCCGCCCGGCTGCTTCCGCGGCGGCG < 41bp 1 0.448494033642184 1 0.430305987596512 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931918 chr7:156931907 . . 0 10 hm5C_associated_SNPs_7741 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10398 DeepMRMD:1;iRNA_m5C:0.999536712157815 10399 chr7 156931928 156931928 1 + C T rs187960014 156931910 + 156931890 156931930 41 CTCCCAGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTCCG CTCCCAGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTTCG < 41bp 1 0.419582738165064 1 0.219732016324997 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931910 chr7:156931928 . . 0 39 hm5C_associated_SNPs_7742 0 0 1 0 0 Ribosome 1 0.500231644681821 1 0.999536710636357 hm5C_site_10399 DeepMRMD:1;iRNA_m5C:0.999536710636357 10400 chr7 156931928 156931928 1 + C T rs187960014 156931911 + 156931891 156931931 41 TCCCAGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTCCGC TCCCAGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTTCGC < 41bp 1 0.600980181784304 1 0.217382371425629 experiment 0.798039636431392 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931911 chr7:156931928 . . 0 38 hm5C_associated_SNPs_7743 0 0 1 0 0 Ribosome 1 0.500231643829868 1 0.999536712340263 hm5C_site_10400 DeepMRMD:1;iRNA_m5C:0.999536712340263 10401 chr7 156931928 156931928 1 + C T rs187960014 156931913 + 156931893 156931933 41 CCAGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTCCGCGG CCAGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTTCGCGG < 41bp 1 0.386834740193888 1 0.122537225484848 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931913 chr7:156931928 . . 0 36 hm5C_associated_SNPs_7744 0 0 1 0 0 Ribosome 1 0.500200079238658 1 0.999599841522684 hm5C_site_10401 DeepMRMD:1;iRNA_m5C:0.999599841522684 10402 chr7 156931928 156931928 1 + C T rs187960014 156931914 + 156931894 156931934 41 CAGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTCCGCGGC CAGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTTCGCGGC < 41bp 1 0.255666687127831 1 0.0757082998752594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931914 chr7:156931928 . . 0 35 hm5C_associated_SNPs_7745 0 0 1 0 0 Ribosome 1 0.50023164420004 1 0.999536711599919 hm5C_site_10402 DeepMRMD:1;iRNA_m5C:0.999536711599919 10403 chr7 156931928 156931928 1 + C T rs187960014 156931915 + 156931895 156931935 41 AGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTCCGCGGCG AGCCCGCCCCGTGCCCCGCCCGCCCGGCTGCTTTCGCGGCG < 41bp 1 0.650138560492084 1 0.422056674957275 experiment 0.699722879015833 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931915 chr7:156931928 . . 0 34 hm5C_associated_SNPs_7746 0 0 1 0 0 Ribosome 1 0.500229276662462 1 0.999541446675076 hm5C_site_10403 DeepMRMD:1;iRNA_m5C:0.999541446675076 10404 chr7 156931928 156931928 1 + C T rs187960014 156931918 + 156931898 156931938 41 CCGCCCCGTGCCCCGCCCGCCCGGCTGCTTCCGCGGCGGCG CCGCCCCGTGCCCCGCCCGCCCGGCTGCTTTCGCGGCGGCG < 41bp 1 0.409898677645749 1 0.532204210758209 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3C ENSG00000009335 UTR5 Human protein_coding chr7:156931918 chr7:156931928 . . 0 31 hm5C_associated_SNPs_7748 0 0 1 0 0 Ribosome 1 0.500231643921092 0.935591578483582 0.999536712157815 hm5C_site_10404 DeepMRMD:0.935591578483582;iRNA_m5C:0.999536712157815 10405 chr7 157000224 157000224 1 + C T rs17837726 157000240 + 157000220 157000260 41 ATAACGAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT ATAATGAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT < 41bp 1 0.0414717183892202 1 0.129860371351242 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157000240 chr7:157000224 synonymous SNV . 0 5 hm5C_associated_SNPs_7749 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10405 DeepMRMD:1;iRNA_m5C:0.999536712157815 10406 chr7 157000243 157000243 1 + A G rs62001023 157000240 + 157000220 157000260 41 ATAACGAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT ATAACGAATTCTTCGGTGATCCCGTAGAAGGTAAGGATTTT < 41bp 1 0.10828026070355 1 0.160988360643387 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157000240 chr7:157000243 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_7750 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10406 DeepMRMD:1;iRNA_m5C:0.999536712157815 10407 chr7 157204139 157204139 1 + A G rs145782714 157204130 + 157204110 157204150 41 CTGAGCGGGCGTAGGGGAGGCTCCCCAGGATCCCTGCACTG CTGAGCGGGCGTAGGGGAGGCTCCCCAGGGTCCCTGCACTG < 41bp 1 0.312654762244498 1 0.25103771686554 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJB6 ENSG00000105993 intronic Human protein_coding chr7:157204130 chr7:157204139 . . 0 30 hm5C_associated_SNPs_7751 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10407 DeepMRMD:1;iRNA_m5C:0.999536712157815 10408 chr7 157204139 157204139 1 + A G rs145782714 157204132 + 157204112 157204152 41 GAGCGGGCGTAGGGGAGGCTCCCCAGGATCCCTGCACTGAG GAGCGGGCGTAGGGGAGGCTCCCCAGGGTCCCTGCACTGAG < 41bp 1 0.587302395546395 1 0.23554602265358 experiment 0.825395208907211 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJB6 ENSG00000105993 intronic Human protein_coding chr7:157204132 chr7:157204139 . . 0 28 hm5C_associated_SNPs_7752 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10408 DeepMRMD:1;iRNA_m5C:0.999536712157815 10409 chr7 157204139 157204139 1 + A G rs145782714 157204133 + 157204113 157204153 41 AGCGGGCGTAGGGGAGGCTCCCCAGGATCCCTGCACTGAGC AGCGGGCGTAGGGGAGGCTCCCCAGGGTCCCTGCACTGAGC < 41bp 1 0.284797319457309 1 0.687915921211243 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJB6 ENSG00000105993 intronic Human protein_coding chr7:157204133 chr7:157204139 . . 0 27 hm5C_associated_SNPs_7753 0 0 0 0 0 Ribosome 1 0.500231643921092 0.624168157577514 0.999536712157815 hm5C_site_10409 DeepMRMD:0.624168157577514;iRNA_m5C:0.999536712157815 10410 chr7 157204139 157204139 1 + A G rs145782714 157204134 + 157204114 157204154 41 GCGGGCGTAGGGGAGGCTCCCCAGGATCCCTGCACTGAGCG GCGGGCGTAGGGGAGGCTCCCCAGGGTCCCTGCACTGAGCG < 41bp 1 0.633201472339351 1 0.799880504608154 experiment 0.733597055321298 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJB6 ENSG00000105993 intronic Human protein_coding chr7:157204134 chr7:157204139 . . 0 26 hm5C_associated_SNPs_7754 0 0 0 0 0 Ribosome 1 0.500231643921092 0.400238990783692 0.999536712157815 hm5C_site_10410 DeepMRMD:0.400238990783692;iRNA_m5C:0.999536712157815 10411 chr7 157204158 157204158 1 + G A rs566782189 157204168 + 157204148 157204188 41 CTGAGCGGGCGTTGGGGAGGCTCCCCAGGGTCTGTTGTGCG CTGAGCGGGCATTGGGGAGGCTCCCCAGGGTCTGTTGTGCG < 41bp 1 0.204948048872708 1 0.119624376296997 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJB6 ENSG00000105993 intronic Human protein_coding chr7:157204168 chr7:157204158 . . 0 11 hm5C_associated_SNPs_7755 0 0 0 0 0 Ribosome 1 0.500231651005516 1 0.999536697988969 hm5C_site_10411 DeepMRMD:1;iRNA_m5C:0.999536697988969 10412 chr7 157204158 157204158 1 + G A rs566782189 157204170 + 157204150 157204190 41 GAGCGGGCGTTGGGGAGGCTCCCCAGGGTCTGTTGTGCGCT GAGCGGGCATTGGGGAGGCTCCCCAGGGTCTGTTGTGCGCT < 41bp 1 0.410221060206723 1 0.569679081439972 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJB6 ENSG00000105993 intronic Human protein_coding chr7:157204170 chr7:157204158 . . 0 9 hm5C_associated_SNPs_7756 0 0 0 0 0 Ribosome 1 0.500231643921092 0.860641837120056 0.999536712157815 hm5C_site_10412 DeepMRMD:0.860641837120056;iRNA_m5C:0.999536712157815 10413 chr7 157204158 157204158 1 + G A rs566782189 157204171 + 157204151 157204191 41 AGCGGGCGTTGGGGAGGCTCCCCAGGGTCTGTTGTGCGCTC AGCGGGCATTGGGGAGGCTCCCCAGGGTCTGTTGTGCGCTC < 41bp 1 0.348534929785562 1 0.814314842224121 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJB6 ENSG00000105993 intronic Human protein_coding chr7:157204171 chr7:157204158 . . 0 8 hm5C_associated_SNPs_7757 0 0 0 0 0 Ribosome 1 0.500231643920218 0.371370315551758 0.999536712159564 hm5C_site_10413 DeepMRMD:0.371370315551758;iRNA_m5C:0.999536712159564 10414 chr7 158734630 158734630 1 + C T rs199624775 158734618 + 158734598 158734638 41 CTTTCTTCCTGGTCATAGGCCGGCTGTTCGGACGGAAGCAT CTTTCTTCCTGGTCATAGGCCGGCTGTTCGGATGGAAGCAT < 41bp 1 0.489808148014589 1 0.413379192352295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR60 ENSG00000126870 CDS Human protein_coding chr7:158734618 chr7:158734630 synonymous SNV . 0 33 hm5C_associated_SNPs_7760 0 0 1 0 1 Nucleus 1 0.500272687990317 1 0.999454624019366 hm5C_site_10414 DeepMRMD:1;iRNA_m5C:0.999454624019366 10415 chr8 1791537 1791537 1 + G A rs186575667 1791535 + 1791515 1791555 41 GCAGGAGCTCCTTCCCTTAACAGAGCTGAGAGAGGCATCTG GCAGGAGCTCCTTCCCTTAACAAAGCTGAGAGAGGCATCTG < 41bp 1 0.579121123140775 1 0.465227484703064 experiment 0.84175775371845 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791535 chr8:1791537 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_7762 0 0 1 0 2 Nucleus 1 0.500231688712092 1 0.999536622575816 hm5C_site_10415 DeepMRMD:1;iRNA_m5C:0.999536622575816 10416 chr8 1791537 1791537 1 + G A rs186575667 1791550 + 1791530 1791570 41 CTTAACAGAGCTGAGAGAGGCATCTGGAGCTGCAGCATGGA CTTAACAAAGCTGAGAGAGGCATCTGGAGCTGCAGCATGGA < 41bp 1 0.27846354322407 1 0.165222257375717 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791550 chr8:1791537 nonsynonymous SNV 0.002 0 8 hm5C_associated_SNPs_7763 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10416 DeepMRMD:1;iRNA_m5C:0.999536712157815 10417 chr8 1806229 1806229 1 + A C rs4875950 1806226 + 1806206 1806246 41 CCAGAAGCGGACAGACAGGCCCCATCCGCCCCTGAGACAGG CCAGAAGCGGACAGACAGGCCCCCTCCGCCCCTGAGACAGG < 41bp 1 0.133837078090123 1 0.11646831035614 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1806226 chr8:1806229 synonymous SNV . 0 24 hm5C_associated_SNPs_7764 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10417 DeepMRMD:1;iRNA_m5C:0.999536712157815 10418 chr8 1851447 1851447 1 + G A rs201067899 1851453 + 1851433 1851473 41 CCTGTTGCTTGTAGGACATGCTGAAGAACACCTCCAAAGGC CCTGTTGCTTGTAGAACATGCTGAAGAACACCTCCAAAGGC < 41bp 1 0.680608649385523 1 0.449548363685608 experiment 0.638782701228954 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1851453 chr8:1851447 nonsynonymous SNV 0.964 4 15 hm5C_associated_SNPs_7765 0 0 1 0 1 Nucleus 1 0.500233348230738 1 0.999533303538523 hm5C_site_10418 DeepMRMD:1;iRNA_m5C:0.999533303538523 10419 chr8 6302738 6302738 1 + G A rs146586991 6302737 + 6302717 6302757 41 GGCCGTGCAACTTCGAGTTGCGTGACTTCTGCCCCTGAAGA GGCCGTGCAACTTCGAGTTGCATGACTTCTGCCCCTGAAGA < 41bp 1 0.540838409847748 1 0.0531031787395477 experiment 0.918323180304505 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCPH1 ENSG00000147316 CDS Human protein_coding chr8:6302737 chr8:6302738 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_7766 3 0 1 0 0 Nucleus 1 0.500231643894083 1 0.999536712211835 hm5C_site_10419 DeepMRMD:1;iRNA_m5C:0.999536712211835 not specified not specified 10420 chr8 6582437 6582437 1 + A G rs116874845 6582451 + 6582431 6582471 41 TAATATATTTAGCAAATCATCAAAGCACAGGTTTGTATTTC TAATATGTTTAGCAAATCATCAAAGCACAGGTTTGTATTTC < 41bp 1 0.255958553030206 1 0.246810048818588 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGPAT5 ENSG00000155189 CDS Human protein_coding chr8:6582451 chr8:6582437 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_7768 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_10420 DeepMRMD:1;iRNA_m5C:0.999536712157815 10421 chr8 8093762 8093762 1 + G A rs568343457 8093774 + 8093754 8093794 41 GCTGGACTGGGACGTAGTGACGGTCCATCAGCGCTCTGCCT GCTGGACTAGGACGTAGTGACGGTCCATCAGCGCTCTGCCT < 41bp 1 0.254262096940339 1 0.901839971542358 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM86B3P ENSG00000173295;ENSG00000253981 ncRNA_exonic Human other chr8:8093774 chr8:8093762 . . 0 9 hm5C_associated_SNPs_7769 0 0 0 0 1 unknown 1 0.500232097142381 0.196320056915284 0.999535805715237 hm5C_site_10421 DeepMRMD:0.196320056915284;iRNA_m5C:0.999535805715237 10422 chr8 8890468 8890468 1 + C G rs145487375 8890481 + 8890461 8890501 41 CTCGAGACCAGAGACTGTGACTTCTGCATCTTTGATTCCAG CTCGAGAGCAGAGACTGTGACTTCTGCATCTTTGATTCCAG < 41bp 1 0.475179384070997 1 0.232608288526535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ERI1 ENSG00000104626 UTR3 Human protein_coding chr8:8890481 chr8:8890468 . . 0 8 hm5C_associated_SNPs_7770 0 0 1 3 0 Ribosome 1 0.500231356071076 1 0.999537287857847 hm5C_site_10422 DeepMRMD:1;iRNA_m5C:0.999537287857847 10423 chr8 9564419 9564419 1 + C T rs34433162 9564436 + 9564416 9564456 41 TAGCCATGGCGCTGATCCTACATTAGTCAACTGCCATGGCA TAGTCATGGCGCTGATCCTACATTAGTCAACTGCCATGGCA < 41bp 1 0.31627637414493 1 0.0302234292030334 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9564436 chr8:9564419 synonymous SNV . 0 4 hm5C_associated_SNPs_7771 0 0 1 0 2 Nucleus 1 0.500231643920975 1 0.999536712158049 hm5C_site_10423 DeepMRMD:1;iRNA_m5C:0.999536712158049 10424 chr8 9564437 9564437 1 + A G rs7006985 9564436 + 9564416 9564456 41 TAGCCATGGCGCTGATCCTACATTAGTCAACTGCCATGGCA TAGCCATGGCGCTGATCCTACGTTAGTCAACTGCCATGGCA < 41bp 1 0.37735786596181 1 0.0560300946235657 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9564436 chr8:9564437 synonymous SNV . 0 22 hm5C_associated_SNPs_7772 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10424 DeepMRMD:1;iRNA_m5C:0.999536712157815 10425 chr8 9635060 9635060 1 + C T rs530512767 9635050 + 9635030 9635070 41 TTTCCAACACAAGCCTGCCACAGAGGTCTTCGGGACAGTAC TTTCCAACACAAGCCTGCCACAGAGGTCTTTGGGACAGTAC < 41bp 1 0.551892338045656 1 0.784770369529724 experiment 0.896215323908687 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNKS ENSG00000173273 UTR3 Human protein_coding chr8:9635050 chr8:9635060 . . 0 31 hm5C_associated_SNPs_7773 0 0 1 0 0 Nucleus 1 0.500239027142734 0.430459260940552 0.999521945714533 hm5C_site_10425 DeepMRMD:0.430459260940552;iRNA_m5C:0.999521945714533 Height 10426 chr8 11142263 11142263 1 + G T rs549280587 11142266 + 11142246 11142286 41 CCCACCCAGCCTGGGGCGGGCCCAGCCTCACCGCCCGGCCC CCCACCCAGCCTGGGGCTGGCCCAGCCTCACCGCCCGGCCC < 41bp 1 0.618462469120021 1 0.107769310474396 experiment 0.763075061759958 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142266 chr8:11142263 . . 0 18 hm5C_associated_SNPs_7775 0 0 0 0 0 Ribosome 1 0.500231643921632 1 0.999536712156736 hm5C_site_10426 DeepMRMD:1;iRNA_m5C:0.999536712156736 10427 chr8 11142263 11142263 1 + G T rs549280587 11142267 + 11142247 11142287 41 CCACCCAGCCTGGGGCGGGCCCAGCCTCACCGCCCGGCCCG CCACCCAGCCTGGGGCTGGCCCAGCCTCACCGCCCGGCCCG < 41bp 1 0.682258030319406 1 0.183291018009186 experiment 0.635483939361188 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142267 chr8:11142263 . . 0 17 hm5C_associated_SNPs_7776 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10427 DeepMRMD:1;iRNA_m5C:0.999536712157815 10428 chr8 11142270 11142270 1 + G C rs537858624 11142266 + 11142246 11142286 41 CCCACCCAGCCTGGGGCGGGCCCAGCCTCACCGCCCGGCCC CCCACCCAGCCTGGGGCGGGCCCACCCTCACCGCCCGGCCC < 41bp 1 0.296054838411862 1 0.0796736478805542 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142266 chr8:11142270 . . 0 25 hm5C_associated_SNPs_7777 0 0 0 0 0 Ribosome 1 0.500231645766283 1 0.999536708467434 hm5C_site_10428 DeepMRMD:1;iRNA_m5C:0.999536708467434 10429 chr8 11142270 11142270 1 + G C rs537858624 11142267 + 11142247 11142287 41 CCACCCAGCCTGGGGCGGGCCCAGCCTCACCGCCCGGCCCG CCACCCAGCCTGGGGCGGGCCCACCCTCACCGCCCGGCCCG < 41bp 1 0.446294798163267 1 0.040180891752243 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142267 chr8:11142270 . . 0 24 hm5C_associated_SNPs_7778 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10429 DeepMRMD:1;iRNA_m5C:0.999536712157815 10430 chr8 11142270 11142270 1 + G C rs537858624 11142284 + 11142264 11142304 41 GGCCCAGCCTCACCGCCCGGCCCGCCCCGCCCCACGGGCCA GGCCCACCCTCACCGCCCGGCCCGCCCCGCCCCACGGGCCA < 41bp 1 0.337904339173274 1 0.158923983573914 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142284 chr8:11142270 . . 0 7 hm5C_associated_SNPs_7779 0 0 0 0 0 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_10430 DeepMRMD:1;iRNA_m5C:0.999536712157813 10431 chr8 11142270 11142270 1 + G C rs537858624 11142285 + 11142265 11142305 41 GCCCAGCCTCACCGCCCGGCCCGCCCCGCCCCACGGGCCAG GCCCACCCTCACCGCCCGGCCCGCCCCGCCCCACGGGCCAG < 41bp 1 0.346124612257797 1 0.061185747385025 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142285 chr8:11142270 . . 0 6 hm5C_associated_SNPs_7780 0 0 0 0 0 Ribosome 1 0.500231643921276 1 0.999536712157448 hm5C_site_10431 DeepMRMD:1;iRNA_m5C:0.999536712157448 10432 chr8 11142270 11142270 1 + G C rs537858624 11142286 + 11142266 11142306 41 CCCAGCCTCACCGCCCGGCCCGCCCCGCCCCACGGGCCAGC CCCACCCTCACCGCCCGGCCCGCCCCGCCCCACGGGCCAGC < 41bp 1 0.483569873483011 1 0.0382947623729706 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142286 chr8:11142270 . . 0 5 hm5C_associated_SNPs_7781 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10432 DeepMRMD:1;iRNA_m5C:0.999536712157815 10433 chr8 11142270 11142270 1 + G C rs537858624 11142288 + 11142268 11142308 41 CAGCCTCACCGCCCGGCCCGCCCCGCCCCACGGGCCAGCCC CACCCTCACCGCCCGGCCCGCCCCGCCCCACGGGCCAGCCC < 41bp 1 0.482994608074262 1 0.100984841585159 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142288 chr8:11142270 . . 0 3 hm5C_associated_SNPs_7782 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10433 DeepMRMD:1;iRNA_m5C:0.999536712157815 10434 chr8 11142270 11142270 1 + G C rs537858624 11142289 + 11142269 11142309 41 AGCCTCACCGCCCGGCCCGCCCCGCCCCACGGGCCAGCCCC ACCCTCACCGCCCGGCCCGCCCCGCCCCACGGGCCAGCCCC < 41bp 1 0.407540362046495 1 0.212652742862701 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142289 chr8:11142270 . . 0 2 hm5C_associated_SNPs_7783 0 0 0 0 0 Ribosome 1 0.500231643921781 1 0.999536712156438 hm5C_site_10434 DeepMRMD:1;iRNA_m5C:0.999536712156438 10435 chr8 11142270 11142270 1 + G C rs537858624 11142290 + 11142270 11142310 41 GCCTCACCGCCCGGCCCGCCCCGCCCCACGGGCCAGCCCCG CCCTCACCGCCCGGCCCGCCCCGCCCCACGGGCCAGCCCCG < 41bp 1 0.463852656639556 1 0.198792368173599 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142290 chr8:11142270 . . 0 1 hm5C_associated_SNPs_7784 0 0 0 0 0 Ribosome 1 0.50023164392109 1 0.999536712157819 hm5C_site_10435 DeepMRMD:1;iRNA_m5C:0.999536712157819 10436 chr8 11643672 11643672 1 + G T rs144424540 11643658 + 11643638 11643678 41 CTACCAGAAAGAACAGTGCCCTGCTGGCCACCAGGTCATGA CTACCAGAAAGAACAGTGCCCTGCTGGCCACCAGTTCATGA < 41bp 1 0.475224958146299 1 0.028094083070755 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11643658 chr8:11643672 nonsynonymous SNV 0.152 1 35 hm5C_associated_SNPs_7785 0 0 0 0 0 Ribosome 1 0.500231639874204 1 0.999536720251592 hm5C_site_10436 DeepMRMD:1;iRNA_m5C:0.999536720251592 10437 chr8 11644012 11644012 1 + C T rs181242603 11643995 + 11643975 11644015 41 TCTAGTTCAGTTAATTCATCCTGTTGAATTGCACCATCGTG TCTAGTTCAGTTAATTCATCCTGTTGAATTGCACCATTGTG < 41bp 1 0.0899632739659353 1 0.0689049959182739 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NEIL2 ENSG00000154328 UTR3 Human protein_coding chr8:11643995 chr8:11644012 . . 0 38 hm5C_associated_SNPs_7786 0 0 1 0 0 Ribosome 1 0.500231643352269 1 0.999536713295463 hm5C_site_10437 DeepMRMD:1;iRNA_m5C:0.999536713295463 10438 chr8 11695970 11695970 1 + A G rs189378553 11695990 + 11695970 11696010 41 AGAATCTTCCCAACTGTCAGCTGATTTCCCGAAGCCACTAC GGAATCTTCCCAACTGTCAGCTGATTTCCCGAAGCCACTAC < 41bp 1 0.473260097632326 1 0.186774253845215 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11695990 chr8:11695970 nonsynonymous SNV 0.934 1 1 hm5C_associated_SNPs_7787 0 0 1 0 1 Cytosol 1 0.500231643919955 1 0.99953671216009 hm5C_site_10438 DeepMRMD:1;iRNA_m5C:0.99953671216009 10439 chr8 17423569 17423569 1 + T A rs6980566 17423573 + 17423553 17423593 41 TTGAAGATCAAAGAGTTAGACCAATGCTTGAATAAGTAGAC TTGAAGATCAAAGAGTAAGACCAATGCTTGAATAAGTAGAC < 41bp 1 0.117898530689927 1 0.323683321475983 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC7A2 ENSG00000003989 UTR3 Human protein_coding chr8:17423573 chr8:17423569 . . 0 17 hm5C_associated_SNPs_7788 0 0 1 0 0 Ribosome 1 0.500231643921062 1 0.999536712157877 hm5C_site_10439 DeepMRMD:1;iRNA_m5C:0.999536712157877 10440 chr8 17424344 17424344 1 + A G rs58218284 17424352 + 17424332 17424372 41 TCCCAGGACAGCATGGTGAACATTACCAGGCATGCTAGCTG TCCCAGGACAGCGTGGTGAACATTACCAGGCATGCTAGCTG < 41bp 1 0.444122363873795 1 0.0453577637672424 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC7A2 ENSG00000003989 UTR3 Human protein_coding chr8:17424352 chr8:17424344 . . 0 13 hm5C_associated_SNPs_7789 0 0 1 0 0 Ribosome 1 0.500231643888766 1 0.999536712222468 hm5C_site_10440 DeepMRMD:1;iRNA_m5C:0.999536712222468 10441 chr8 17426274 17426274 1 + A G rs14108 17426288 + 17426268 17426308 41 TTTAAGACCGGCCTGAGTAGCATAGCAAGACCCTGTCTCTA TTTAAGGCCGGCCTGAGTAGCATAGCAAGACCCTGTCTCTA < 41bp 1 0.462460800154023 1 0.158439844846725 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC7A2 ENSG00000003989 UTR3 Human protein_coding chr8:17426288 chr8:17426274 . . 0 7 hm5C_associated_SNPs_7790 0 0 1 0 0 Ribosome 1 0.500231646155397 1 0.999536707689206 hm5C_site_10441 DeepMRMD:1;iRNA_m5C:0.999536707689206 10442 chr8 17426277 17426277 1 + G A rs143922403 17426288 + 17426268 17426308 41 TTTAAGACCGGCCTGAGTAGCATAGCAAGACCCTGTCTCTA TTTAAGACCAGCCTGAGTAGCATAGCAAGACCCTGTCTCTA < 41bp 1 0.465747793150607 1 0.0970278084278107 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC7A2 ENSG00000003989 UTR3 Human protein_coding chr8:17426288 chr8:17426277 . . 0 10 hm5C_associated_SNPs_7791 0 0 1 0 0 Ribosome 1 0.500239219198707 1 0.999521561602586 hm5C_site_10442 DeepMRMD:1;iRNA_m5C:0.999521561602586 10443 chr8 17426282 17426282 1 + G A rs147397454 17426288 + 17426268 17426308 41 TTTAAGACCGGCCTGAGTAGCATAGCAAGACCCTGTCTCTA TTTAAGACCGGCCTAAGTAGCATAGCAAGACCCTGTCTCTA < 41bp 1 0.483824635573624 1 0.192369192838669 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC7A2 ENSG00000003989 UTR3 Human protein_coding chr8:17426288 chr8:17426282 . . 0 15 hm5C_associated_SNPs_7792 0 0 1 0 0 Ribosome 1 0.500231643938803 1 0.999536712122394 hm5C_site_10443 DeepMRMD:1;iRNA_m5C:0.999536712122394 10444 chr8 17426285 17426285 1 + T C rs138094091 17426288 + 17426268 17426308 41 TTTAAGACCGGCCTGAGTAGCATAGCAAGACCCTGTCTCTA TTTAAGACCGGCCTGAGCAGCATAGCAAGACCCTGTCTCTA < 41bp 1 0.400542388184931 1 0.245436877012253 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC7A2 ENSG00000003989 UTR3 Human protein_coding chr8:17426288 chr8:17426285 . . 0 18 hm5C_associated_SNPs_7793 0 0 1 0 0 Ribosome 1 0.500231721834101 1 0.999536556331799 hm5C_site_10444 DeepMRMD:1;iRNA_m5C:0.999536556331799 10445 chr8 17426499 17426499 1 + T C rs7827073 17426511 + 17426491 17426531 41 TAAAACACTTTAATTAGAATCTATTTTTACCTATTTTCTAA TAAAACACCTTAATTAGAATCTATTTTTACCTATTTTCTAA < 41bp 1 0.098826223575891 1 0.0957643687725067 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC7A2 ENSG00000003989 UTR3 Human protein_coding chr8:17426511 chr8:17426499 . . 0 9 hm5C_associated_SNPs_7794 0 0 0 0 0 Ribosome 1 0.500231643925497 1 0.999536712149007 hm5C_site_10445 DeepMRMD:1;iRNA_m5C:0.999536712149007 10446 chr8 17794733 17794733 1 + G A rs34804690 17794729 + 17794709 17794749 41 GAAAGTGATAAAAGAGTAACCAATGATATTTCTCCGGAGTC GAAAGTGATAAAAGAGTAACCAATAATATTTCTCCGGAGTC < 41bp 1 0.437673408523432 1 0.361956834793091 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17794729 chr8:17794733 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_7799 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10446 DeepMRMD:1;iRNA_m5C:0.999536712157815 10447 chr8 17817571 17817571 1 + G A rs558115555 17817579 + 17817559 17817599 41 GCATCAAATTTGGATGATTTCTACCCAGCAGAAGAAGACAC GCATCAAATTTGAATGATTTCTACCCAGCAGAAGAAGACAC < 41bp 1 0.313662393644742 1 0.0492197275161743 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17817579 chr8:17817571 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_7800 0 0 1 0 1 Nucleus 1 0.500208602979693 1 0.999582794040614 hm5C_site_10447 DeepMRMD:1;iRNA_m5C:0.999582794040614 10448 chr8 17819572 17819572 1 + C T rs3780103 17819570 + 17819550 17819590 41 CTGCTAGTGTGGGTAACTGTCCCACCAAAAAATATATGCCA CTGCTAGTGTGGGTAACTGTCCTACCAAAAAATATATGCCA < 41bp 1 0.0593087544194543 1 0.303266763687134 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PCM1 ENSG00000078674 CDS Human protein_coding chr8:17819570 chr8:17819572 synonymous SNV . 0 23 hm5C_associated_SNPs_7801 0 0 1 0 1 Nucleus 1 0.50023164391997 1 0.99953671216006 hm5C_site_10448 DeepMRMD:1;iRNA_m5C:0.99953671216006 10449 chr8 17819572 17819572 1 + C T rs3780103 17819571 + 17819551 17819591 41 TGCTAGTGTGGGTAACTGTCCCACCAAAAAATATATGCCAG TGCTAGTGTGGGTAACTGTCCTACCAAAAAATATATGCCAG < 41bp 1 0.308903141819187 1 0.453431934118271 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17819571 chr8:17819572 synonymous SNV . 0 22 hm5C_associated_SNPs_7802 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10449 DeepMRMD:1;iRNA_m5C:0.999536712157815 10450 chr8 19252602 19252602 1 + C T rs2280443 19252606 + 19252586 19252626 41 GTAGCAAAAGCCTTTCCTGGCTGAGATGATGCTTAAAACAC GTAGCAAAAGCCTTTCTTGGCTGAGATGATGCTTAAAACAC < 41bp 1 0.535712045531142 1 0.290370106697083 experiment 0.928575908937715 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH2D4A ENSG00000104611 UTR3 Human protein_coding chr8:19252606 chr8:19252602 . . 0 17 hm5C_associated_SNPs_7803 0 0 0 0 0 Nucleus 1 0.500231199125998 1 0.999537601748003 hm5C_site_10450 DeepMRMD:1;iRNA_m5C:0.999537601748003 10451 chr8 19253041 19253041 1 + T C rs144784881 19253056 + 19253036 19253076 41 TCACATTGGATTAGGGTGGGCCCCAAATCCAATGACTGGCA TCACACTGGATTAGGGTGGGCCCCAAATCCAATGACTGGCA < 41bp 1 0.629946432862664 1 0.076513946056366 experiment 0.740107134274672 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH2D4A ENSG00000104611 UTR3 Human protein_coding chr8:19253056 chr8:19253041 . . 0 6 hm5C_associated_SNPs_7804 0 0 1 0 0 Nucleus 1 0.500231643919258 1 0.999536712161484 hm5C_site_10451 DeepMRMD:1;iRNA_m5C:0.999536712161484 10452 chr8 20073976 20073976 1 + C A rs138887483 20073985 + 20073965 20074005 41 GAGGGGCAGATCTATGTGGACAGACAGCTGCACAACAGACA GAGGGGCAGATATATGTGGACAGACAGCTGCACAACAGACA < 41bp 1 0.238858684620891 1 0.187987506389618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20073985 chr8:20073976 synonymous SNV . 0 12 hm5C_associated_SNPs_7806 0 0 1 0 2 Ribosome 1 0.500231643892087 1 0.999536712215826 hm5C_site_10452 DeepMRMD:1;iRNA_m5C:0.999536712215826 10453 chr8 21882086 21882086 1 + G A rs377061270 21882104 + 21882084 21882124 41 AGGGCAGCTGTGGAGTGGGGCGCGGCAATGCGCCCCTTAAC AGAGCAGCTGTGGAGTGGGGCGCGGCAATGCGCCCCTTAAC < 41bp 1 0.643642407121404 1 0.733716130256653 experiment 0.712715185757191 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882104 chr8:21882086 . . 0 3 hm5C_associated_SNPs_7807 0 0 0 0 1 nucleus 1 0.500231643921093 0.532567739486694 0.999536712157815 hm5C_site_10453 DeepMRMD:0.532567739486694;iRNA_m5C:0.999536712157815 10454 chr8 21882131 21882131 1 + C G rs572345500 21882114 + 21882094 21882134 41 TGGAGTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTCCAG TGGAGTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTGCAG < 41bp 1 0.576534786911151 1 0.297832310199738 experiment 0.846930426177698 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882114 chr8:21882131 . . 0 38 hm5C_associated_SNPs_7808 0 0 1 0 1 nucleus 1 0.500231643922342 1 0.999536712155317 hm5C_site_10454 DeepMRMD:1;iRNA_m5C:0.999536712155317 10455 chr8 21882131 21882131 1 + C G rs572345500 21882116 + 21882096 21882136 41 GAGTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTCCAGGT GAGTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTGCAGGT < 41bp 1 0.245614016254906 1 0.0516405403614044 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882116 chr8:21882131 . . 0 36 hm5C_associated_SNPs_7809 0 0 1 0 1 nucleus 1 0.500231643923192 1 0.999536712153615 hm5C_site_10455 DeepMRMD:1;iRNA_m5C:0.999536712153615 10456 chr8 21882131 21882131 1 + C G rs572345500 21882117 + 21882097 21882137 41 AGTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTCCAGGTG AGTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTGCAGGTG < 41bp 1 0.0827684522301982 1 0.179212391376495 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882117 chr8:21882131 . . 0 35 hm5C_associated_SNPs_7810 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10456 DeepMRMD:1;iRNA_m5C:0.999536712157815 10457 chr8 21882131 21882131 1 + C G rs572345500 21882118 + 21882098 21882138 41 GTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTCCAGGTGA GTGGGGCGCGGCAATGCGCCCCTTAACAGCCCTGCAGGTGA < 41bp 1 0.130840618226827 1 0.121904730796814 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882118 chr8:21882131 . . 0 34 hm5C_associated_SNPs_7811 0 0 1 0 1 nucleus 1 0.500231643922649 1 0.999536712154702 hm5C_site_10457 DeepMRMD:1;iRNA_m5C:0.999536712154702 10458 chr8 21882131 21882131 1 + C G rs572345500 21882119 + 21882099 21882139 41 TGGGGCGCGGCAATGCGCCCCTTAACAGCCCTCCAGGTGAT TGGGGCGCGGCAATGCGCCCCTTAACAGCCCTGCAGGTGAT < 41bp 1 0.201820749943597 1 0.312233686447144 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882119 chr8:21882131 . . 0 33 hm5C_associated_SNPs_7812 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10458 DeepMRMD:1;iRNA_m5C:0.999536712157815 10459 chr8 21882354 21882354 1 + G C rs560349990 21882340 + 21882320 21882360 41 GGCCCCGCGCGGAGCAGCGACAGTAAGGCTGTGTGGGGGGA GGCCCCGCGCGGAGCAGCGACAGTAAGGCTGTGTCGGGGGA < 41bp 1 0.576248322366588 1 0.110072195529938 experiment 0.847503355266823 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882340 chr8:21882354 . . 0 35 hm5C_associated_SNPs_7813 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10459 DeepMRMD:1;iRNA_m5C:0.999536712157815 10460 chr8 21939455 21939455 1 + G C rs146843724 21939450 + 21939430 21939470 41 GCAGCCTCCTGCTCCTCTGACTCTAGTGGGAACAGGCCCCA GCAGCCTCCTGCTCCTCTGACTCTACTGGGAACAGGCCCCA < 41bp 1 0.659048596822539 1 0.789541363716125 experiment 0.681902806354921 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control DMTN ENSG00000158856 UTR3 Human protein_coding chr8:21939450 chr8:21939455 . . 0 26 hm5C_associated_SNPs_7815 0 0 0 0 0 Cytosol 1 0.500231643921063 0.42091727256775 0.999536712157873 hm5C_site_10460 DeepMRMD:0.42091727256775;iRNA_m5C:0.999536712157873 10461 chr8 21957351 21957351 1 + C T rs557506421 21957337 + 21957317 21957357 41 CACAGACCGGCAGCCTGAAGCCCCCGGGGACAACCCCCACA CACAGACCGGCAGCCTGAAGCCCCCGGGGACAACTCCCACA < 41bp 1 0.278005463843724 1 0.0925238728523254 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21957337 chr8:21957351 nonsynonymous SNV 0.008 0 35 hm5C_associated_SNPs_7816 0 0 0 0 1 chromatin 1 0.500231644149064 1 0.999536711701872 hm5C_site_10461 DeepMRMD:1;iRNA_m5C:0.999536711701872 10462 chr8 21960129 21960129 1 + C T rs547014170 21960138 + 21960118 21960158 41 CGGGCCAGGCTCCTGGGGAGCAGTGAGTACCAAGGGTGCCA CGGGCCAGGCTTCTGGGGAGCAGTGAGTACCAAGGGTGCCA < 41bp 1 0.328785084100434 1 0.41685488820076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21960138 chr8:21960129 nonsynonymous SNV 0.991 1 12 hm5C_associated_SNPs_7817 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_10462 DeepMRMD:1;iRNA_m5C:0.999536712157815 10463 chr8 22279258 22279258 1 + T C rs76806153 22279252 + 22279232 22279272 41 GCATTCCCAATAGATCCTATCATTCCTTAAACATAATACCC GCATTCCCAATAGATCCTATCATTCCCTAAACATAATACCC < 41bp 1 0.0265948185592852 1 0.0664351284503937 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC39A14 ENSG00000104635 UTR3 Human protein_coding chr8:22279252 chr8:22279258 . . 0 27 hm5C_associated_SNPs_7819 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644058349 1 0.999536711883303 hm5C_site_10463 DeepMRMD:1;iRNA_m5C:0.999536711883303 10464 chr8 22429238 22429238 1 + G A rs150882165 22429234 + 22429214 22429254 41 TTCCTGTCAACTCCCAGAATCTTGGCACCCCTGGTCCAGCT TTCCTGTCAACTCCCAGAATCTTGACACCCCTGGTCCAGCT < 41bp 1 0.385752345043544 1 0.434633880853653 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429234 chr8:22429238 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_7820 0 0 1 0 2 Cytosol 1 0.50023164391778 1 0.999536712164441 hm5C_site_10464 DeepMRMD:1;iRNA_m5C:0.999536712164441 10465 chr8 22473329 22473329 1 + C A rs77337016 22473327 + 22473307 22473347 41 TCCCAGAGGCCCCTCCACCCCCCCTAGAACCTGCTGTCATC TCCCAGAGGCCCCTCCACCCCCACTAGAACCTGCTGTCATC < 41bp 1 0.221353350226305 1 0.202204495668411 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22473327 chr8:22473329 synonymous SNV . 0 23 hm5C_associated_SNPs_7821 0 0 0 0 0 Nucleus 1 0.500231647628263 1 0.999536704743474 hm5C_site_10465 DeepMRMD:1;iRNA_m5C:0.999536704743474 10466 chr8 22473347 22473347 1 + C G rs143313961 22473327 + 22473307 22473347 41 TCCCAGAGGCCCCTCCACCCCCCCTAGAACCTGCTGTCATC TCCCAGAGGCCCCTCCACCCCCCCTAGAACCTGCTGTCATG < 41bp 1 0.271948527244744 1 0.272131264209747 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22473327 chr8:22473347 nonsynonymous SNV 0.877 0 41 hm5C_associated_SNPs_7822 0 0 1 0 0 Nucleus 1 0.500231643967317 1 0.999536712065366 hm5C_site_10466 DeepMRMD:1;iRNA_m5C:0.999536712065366 10467 chr8 22862115 22862115 1 + C T rs61732770 22862102 + 22862082 22862122 41 GCTGGCCACGCATGTGCCCACAGTATGGGCCATCGACCAAT GCTGGCCACGCATGTGCCCACAGTATGGGCCATTGACCAAT < 41bp 1 0.675885740977372 1 0.117255836725235 experiment 0.648228518045255 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862102 chr8:22862115 synonymous SNV . 0 34 hm5C_associated_SNPs_7823 0 0 0 0 1 cytosol 1 0.500231644251135 1 0.99953671149773 hm5C_site_10467 DeepMRMD:1;iRNA_m5C:0.99953671149773 10468 chr8 23118304 23118304 1 + C T rs72609908 23118290 + 23118270 23118310 41 AATTTCTGGAAGCGATGCTCCAAAGGCTTGCTCCCAGCTGT AATTTCTGGAAGCGATGCTCCAAAGGCTTGCTCCTAGCTGT < 41bp 1 0.538751471716129 1 0.605464279651642 experiment 0.922497056567742 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHMP7 ENSG00000147457 UTR3 Human protein_coding chr8:23118290 chr8:23118304 . . 0 35 hm5C_associated_SNPs_7824 0 0 1 0 0 Ribosome 1 0.500231693202738 0.789071440696716 0.999536613594524 hm5C_site_10468 DeepMRMD:0.789071440696716;iRNA_m5C:0.999536613594524 10469 chr8 23147920 23147920 1 + G A rs189694680 23147913 + 23147893 23147933 41 GTGGCAGAGGAGGAAGAGGACGAAGAGGAGGTGGAAGAGGA GTGGCAGAGGAGGAAGAGGACGAAGAGAAGGTGGAAGAGGA < 41bp 1 0.591169522649628 1 0.732540309429169 experiment 0.817660954700744 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23147913 chr8:23147920 nonsynonymous SNV 0.027 0 28 hm5C_associated_SNPs_7825 0 0 1 0 1 Cytosol 1 0.500231643921092 0.534919381141662 0.999536712157815 hm5C_site_10469 DeepMRMD:0.534919381141662;iRNA_m5C:0.999536712157815 10470 chr8 23153387 23153387 1 + C T rs375980566 23153369 + 23153349 23153389 41 ACAGCTGGGCCGAGGCCCCACATGTGTCACATGAGAGGCTG ACAGCTGGGCCGAGGCCCCACATGTGTCACATGAGAGGTTG < 41bp 1 0.344854290248114 1 0.0593683421611786 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control R3HCC1 ENSG00000104679 intronic Human protein_coding chr8:23153369 chr8:23153387 . . 0 39 hm5C_associated_SNPs_7827 0 0 1 0 0 Cytosol 1 0.500311488178187 1 0.999377023643626 hm5C_site_10470 DeepMRMD:1;iRNA_m5C:0.999377023643626 10471 chr8 23428586 23428586 1 + G C rs558761368 23428603 + 23428583 23428623 41 CAAGATTCAGGCAGGAGAGACGGAAATAGCCACCTTCCAGG CAACATTCAGGCAGGAGAGACGGAAATAGCCACCTTCCAGG < 41bp 1 0.558283983539532 1 0.483725339174271 experiment 0.883432032920936 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC25A37 ENSG00000147454 intronic Human protein_coding chr8:23428603 chr8:23428586 . . 0 4 hm5C_associated_SNPs_7828 0 0 1 0 0 Ribosome 1 0.500231643922347 1 0.999536712155306 hm5C_site_10471 DeepMRMD:1;iRNA_m5C:0.999536712155306 10472 chr8 23428588 23428588 1 + T C rs188142232 23428603 + 23428583 23428623 41 CAAGATTCAGGCAGGAGAGACGGAAATAGCCACCTTCCAGG CAAGACTCAGGCAGGAGAGACGGAAATAGCCACCTTCCAGG < 41bp 1 0.564354623354758 1 0.468925327062607 experiment 0.871290753290485 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC25A37 ENSG00000147454 intronic Human protein_coding chr8:23428603 chr8:23428588 . . 0 6 hm5C_associated_SNPs_7829 0 0 1 0 0 Ribosome 1 0.500231643921214 1 0.999536712157572 hm5C_site_10472 DeepMRMD:1;iRNA_m5C:0.999536712157572 10473 chr8 23432332 23432332 1 + C T rs8534 23432351 + 23432331 23432371 41 ACGTACTCAGTCATTGGTGTCTTTGGAGTGACATCTGCAGC ATGTACTCAGTCATTGGTGTCTTTGGAGTGACATCTGCAGC < 41bp 1 0.0891170335927505 1 0.0440167188644409 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC25A37 ENSG00000147454;ENSG00000215298 UTR3 Human other chr8:23432351 chr8:23432332 . . 0 2 hm5C_associated_SNPs_7831 0 0 0 0 0 Ribosome 1 0.500292818304161 1 0.999414363391677 hm5C_site_10473 DeepMRMD:1;iRNA_m5C:0.999414363391677 10474 chr8 25149590 25149590 1 + G A rs35475676 25149584 + 25149564 25149604 41 CAGCTGCAGCAGATGACGTACAGCCTGATCGAGTGGCGGTC CAGCTGCAGCAGATGACGTACAGCCTAATCGAGTGGCGGTC < 41bp 1 0.244931717464221 1 0.644474864006042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149584 chr8:25149590 synonymous SNV . 0 27 hm5C_associated_SNPs_7832 0 0 1 0 2 Nucleus 1 0.500231643921293 0.711050271987916 0.999536712157414 hm5C_site_10474 DeepMRMD:0.711050271987916;iRNA_m5C:0.999536712157414 10475 chr8 25149593 25149593 1 + C A rs142717615 25149584 + 25149564 25149604 41 CAGCTGCAGCAGATGACGTACAGCCTGATCGAGTGGCGGTC CAGCTGCAGCAGATGACGTACAGCCTGATAGAGTGGCGGTC < 41bp 1 0.235024288142709 1 0.445205390453339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149584 chr8:25149593 synonymous SNV . 0 30 hm5C_associated_SNPs_7833 0 0 1 0 2 Nucleus 1 0.500231643920749 1 0.999536712158502 hm5C_site_10475 DeepMRMD:1;iRNA_m5C:0.999536712158502 10476 chr8 25149593 25149593 1 + C A rs142717615 25149611 + 25149591 25149631 41 ATCGAGTGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA ATAGAGTGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA < 41bp 1 0.345176476946412 1 0.667917788028717 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149611 chr8:25149593 synonymous SNV . 0 3 hm5C_associated_SNPs_7834 0 0 1 0 2 Nucleus 1 0.500231643921083 0.664164423942566 0.999536712157835 hm5C_site_10476 DeepMRMD:0.664164423942566;iRNA_m5C:0.999536712157835 10477 chr8 25270297 25270297 1 + T C rs144441818 25270287 + 25270267 25270307 41 AGAGATTTCCATTTCTGCTGCCAGAGCTGGTATTTGCCTGC AGAGATTTCCATTTCTGCTGCCAGAGCTGGCATTTGCCTGC < 41bp 1 0.334139781577614 1 0.471562415361404 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DOCK5 ENSG00000147459 UTR3 Human protein_coding chr8:25270287 chr8:25270297 . . 0 31 hm5C_associated_SNPs_7835 0 0 1 1 0 Nucleus 1 0.500231586269027 1 0.999536827461946 hm5C_site_10477 DeepMRMD:1;iRNA_m5C:0.999536827461946 10478 chr8 25270306 25270306 1 + G A rs139487703 25270287 + 25270267 25270307 41 AGAGATTTCCATTTCTGCTGCCAGAGCTGGTATTTGCCTGC AGAGATTTCCATTTCTGCTGCCAGAGCTGGTATTTGCCTAC < 41bp 1 0.302495671910111 1 0.780180394649506 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DOCK5 ENSG00000147459 UTR3 Human protein_coding chr8:25270287 chr8:25270306 . . 0 40 hm5C_associated_SNPs_7836 0 0 1 2 0 Nucleus 1 0.500231643959235 0.439639210700988 0.99953671208153 hm5C_site_10478 DeepMRMD:0.439639210700988;iRNA_m5C:0.99953671208153 10479 chr8 26223857 26223857 1 + C T rs34109536 26223842 + 26223822 26223862 41 TTCCCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTC TTCCCCCAGGTGCATGAATACCTCAGAAGTAAACTTTGTTC < 41bp 1 0.231614213817784 1 0.0443031489849091 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223842 chr8:26223857 synonymous SNV . 0 36 hm5C_associated_SNPs_7837 0 0 1 0 2 Cytosol 1 0.500231643921176 1 0.999536712157648 hm5C_site_10479 DeepMRMD:1;iRNA_m5C:0.999536712157648 10480 chr8 26223857 26223857 1 + C T rs34109536 26223843 + 26223823 26223863 41 TCCCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTCA TCCCCCAGGTGCATGAATACCTCAGAAGTAAACTTTGTTCA < 41bp 1 0.513591050197875 1 0.240082174539566 experiment 0.972817899604251 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223843 chr8:26223857 synonymous SNV . 0 35 hm5C_associated_SNPs_7838 0 0 1 0 2 Cytosol 1 0.500231643924005 1 0.999536712151991 hm5C_site_10480 DeepMRMD:1;iRNA_m5C:0.999536712151991 10481 chr8 26223857 26223857 1 + C T rs34109536 26223845 + 26223825 26223865 41 CCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTCACT CCCCAGGTGCATGAATACCTCAGAAGTAAACTTTGTTCACT < 41bp 1 0.614479416694714 1 0.426822066307068 experiment 0.771041166610573 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223845 chr8:26223857 synonymous SNV . 0 33 hm5C_associated_SNPs_7839 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10481 DeepMRMD:1;iRNA_m5C:0.999536712157815 10482 chr8 26223857 26223857 1 + C T rs34109536 26223855 + 26223835 26223875 41 ATGAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAAT ATGAATACCTCAGAAGTAAACTTTGTTCACTGTATGAAAAT < 41bp 1 0.14039956481017 1 0.0488056242465973 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223855 chr8:26223857 synonymous SNV . 0 23 hm5C_associated_SNPs_7840 0 0 1 0 2 Cytosol 1 0.500231614525875 1 0.99953677094825 hm5C_site_10482 DeepMRMD:1;iRNA_m5C:0.99953677094825 10483 chr8 26223857 26223857 1 + C T rs34109536 26223862 + 26223842 26223882 41 CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCA CCTCAGAAGTAAACTTTGTTCACTGTATGAAAATGACTGCA < 41bp 1 0.326418038062608 1 0.203027725219727 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223862 chr8:26223857 synonymous SNV . 0 16 hm5C_associated_SNPs_7841 0 0 1 0 2 Cytosol 1 0.500231760833384 1 0.999536478333232 hm5C_site_10483 DeepMRMD:1;iRNA_m5C:0.999536478333232 10484 chr8 26223857 26223857 1 + C T rs34109536 26223864 + 26223844 26223884 41 TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCATA TCAGAAGTAAACTTTGTTCACTGTATGAAAATGACTGCATA < 41bp 1 0.502928196804881 1 0.0952263474464417 experiment 0.994143606390239 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223864 chr8:26223857 synonymous SNV . 0 14 hm5C_associated_SNPs_7842 0 0 1 0 2 Cytosol 1 0.50024445172162 1 0.99951109655676 hm5C_site_10484 DeepMRMD:1;iRNA_m5C:0.99951109655676 10485 chr8 26227640 26227640 1 + A G rs3808565 26227656 + 26227636 26227676 41 GTCTATTTTCACAGTGTTGTCATGACTGGATCTTACAATAA GTCTGTTTTCACAGTGTTGTCATGACTGGATCTTACAATAA < 41bp 1 0.491423772305055 1 0.13389840722084 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 intronic Human protein_coding chr8:26227656 chr8:26227640 . . 0 5 hm5C_associated_SNPs_7843 0 0 1 0 0 Cytosol 1 0.500231684518406 1 0.999536630963187 hm5C_site_10485 DeepMRMD:1;iRNA_m5C:0.999536630963187 10486 chr8 26513384 26513384 1 + C T rs539246558 26513368 + 26513348 26513388 41 GAGCAGCCAGTTCATGGGGTCCCCCTTGGGGCCCCACACCC GAGCAGCCAGTTCATGGGGTCCCCCTTGGGGCCCCATACCC < 41bp 1 0.104370033012376 1 0.0420572757720947 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513368 chr8:26513384 . . 0 37 hm5C_associated_SNPs_7844 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10486 DeepMRMD:1;iRNA_m5C:0.999536712157815 10487 chr8 26513384 26513384 1 + C T rs539246558 26513369 + 26513349 26513389 41 AGCAGCCAGTTCATGGGGTCCCCCTTGGGGCCCCACACCCC AGCAGCCAGTTCATGGGGTCCCCCTTGGGGCCCCATACCCC < 41bp 1 0.157111336368313 1 0.133007943630219 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513369 chr8:26513384 . . 0 36 hm5C_associated_SNPs_7845 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10487 DeepMRMD:1;iRNA_m5C:0.999536712157815 10488 chr8 26513384 26513384 1 + C T rs539246558 26513370 + 26513350 26513390 41 GCAGCCAGTTCATGGGGTCCCCCTTGGGGCCCCACACCCCG GCAGCCAGTTCATGGGGTCCCCCTTGGGGCCCCATACCCCG < 41bp 1 0.215037511119093 1 0.0681060552597046 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513370 chr8:26513384 . . 0 35 hm5C_associated_SNPs_7846 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10488 DeepMRMD:1;iRNA_m5C:0.999536712157815 10489 chr8 26513384 26513384 1 + C T rs539246558 26513379 + 26513359 26513399 41 TCATGGGGTCCCCCTTGGGGCCCCACACCCCGTCTCTCACC TCATGGGGTCCCCCTTGGGGCCCCATACCCCGTCTCTCACC < 41bp 1 0.47973728560889 1 0.0543455481529236 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513379 chr8:26513384 . . 0 26 hm5C_associated_SNPs_7847 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10489 DeepMRMD:1;iRNA_m5C:0.999536712157815 10490 chr8 26513384 26513384 1 + C T rs539246558 26513380 + 26513360 26513400 41 CATGGGGTCCCCCTTGGGGCCCCACACCCCGTCTCTCACCA CATGGGGTCCCCCTTGGGGCCCCATACCCCGTCTCTCACCA < 41bp 1 0.116721723835507 1 0.12939178943634 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513380 chr8:26513384 . . 0 25 hm5C_associated_SNPs_7848 0 0 1 0 0 Nucleus 1 0.500231644155936 1 0.999536711688128 hm5C_site_10490 DeepMRMD:1;iRNA_m5C:0.999536711688128 10491 chr8 26513384 26513384 1 + C T rs539246558 26513381 + 26513361 26513401 41 ATGGGGTCCCCCTTGGGGCCCCACACCCCGTCTCTCACCAA ATGGGGTCCCCCTTGGGGCCCCATACCCCGTCTCTCACCAA < 41bp 1 0.143757905649045 1 0.0544551014900208 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513381 chr8:26513384 . . 0 24 hm5C_associated_SNPs_7849 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10491 DeepMRMD:1;iRNA_m5C:0.999536712157815 10492 chr8 26513384 26513384 1 + C T rs539246558 26513382 + 26513362 26513402 41 TGGGGTCCCCCTTGGGGCCCCACACCCCGTCTCTCACCAAG TGGGGTCCCCCTTGGGGCCCCATACCCCGTCTCTCACCAAG < 41bp 1 0.0547352163901931 1 0.144477784633636 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513382 chr8:26513384 . . 0 23 hm5C_associated_SNPs_7850 0 0 1 0 0 Nucleus 1 0.500231685605164 1 0.999536628789671 hm5C_site_10492 DeepMRMD:1;iRNA_m5C:0.999536628789671 10493 chr8 26513388 26513388 1 + C A rs557567699 26513368 + 26513348 26513388 41 GAGCAGCCAGTTCATGGGGTCCCCCTTGGGGCCCCACACCC GAGCAGCCAGTTCATGGGGTCCCCCTTGGGGCCCCACACCA < 41bp 1 0.12388964478459 1 0.0411669909954071 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513368 chr8:26513388 . . 0 41 hm5C_associated_SNPs_7851 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10493 DeepMRMD:1;iRNA_m5C:0.999536712157815 10494 chr8 26513388 26513388 1 + C A rs557567699 26513369 + 26513349 26513389 41 AGCAGCCAGTTCATGGGGTCCCCCTTGGGGCCCCACACCCC AGCAGCCAGTTCATGGGGTCCCCCTTGGGGCCCCACACCAC < 41bp 1 0.207802121435479 1 0.219115138053894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513369 chr8:26513388 . . 0 40 hm5C_associated_SNPs_7852 0 0 1 0 0 Nucleus 1 0.500231643921102 1 0.999536712157795 hm5C_site_10494 DeepMRMD:1;iRNA_m5C:0.999536712157795 10495 chr8 26513388 26513388 1 + C A rs557567699 26513370 + 26513350 26513390 41 GCAGCCAGTTCATGGGGTCCCCCTTGGGGCCCCACACCCCG GCAGCCAGTTCATGGGGTCCCCCTTGGGGCCCCACACCACG < 41bp 1 0.168831832199314 1 0.0881535410881042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513370 chr8:26513388 . . 0 39 hm5C_associated_SNPs_7853 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10495 DeepMRMD:1;iRNA_m5C:0.999536712157815 10496 chr8 26513388 26513388 1 + C A rs557567699 26513379 + 26513359 26513399 41 TCATGGGGTCCCCCTTGGGGCCCCACACCCCGTCTCTCACC TCATGGGGTCCCCCTTGGGGCCCCACACCACGTCTCTCACC < 41bp 1 0.409837418227293 1 0.0487689971923828 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513379 chr8:26513388 . . 0 30 hm5C_associated_SNPs_7854 0 0 1 0 0 Nucleus 1 0.500231644003732 1 0.999536711992536 hm5C_site_10496 DeepMRMD:1;iRNA_m5C:0.999536711992536 10497 chr8 26513388 26513388 1 + C A rs557567699 26513380 + 26513360 26513400 41 CATGGGGTCCCCCTTGGGGCCCCACACCCCGTCTCTCACCA CATGGGGTCCCCCTTGGGGCCCCACACCACGTCTCTCACCA < 41bp 1 0.0833796582543285 1 0.081987053155899 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513380 chr8:26513388 . . 0 29 hm5C_associated_SNPs_7855 0 0 1 0 0 Nucleus 1 0.500231642539957 1 0.999536714920086 hm5C_site_10497 DeepMRMD:1;iRNA_m5C:0.999536714920086 10498 chr8 26513388 26513388 1 + C A rs557567699 26513381 + 26513361 26513401 41 ATGGGGTCCCCCTTGGGGCCCCACACCCCGTCTCTCACCAA ATGGGGTCCCCCTTGGGGCCCCACACCACGTCTCTCACCAA < 41bp 1 0.290150876297672 1 0.0626618266105652 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513381 chr8:26513388 . . 0 28 hm5C_associated_SNPs_7856 0 0 1 0 0 Nucleus 1 0.500231643921651 1 0.999536712156698 hm5C_site_10498 DeepMRMD:1;iRNA_m5C:0.999536712156698 10499 chr8 26513388 26513388 1 + C A rs557567699 26513382 + 26513362 26513402 41 TGGGGTCCCCCTTGGGGCCCCACACCCCGTCTCTCACCAAG TGGGGTCCCCCTTGGGGCCCCACACCACGTCTCTCACCAAG < 41bp 1 0.165691496665687 1 0.310240864753723 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26513382 chr8:26513388 . . 0 27 hm5C_associated_SNPs_7857 0 0 1 0 0 Nucleus 1 0.500231643851601 1 0.999536712296799 hm5C_site_10499 DeepMRMD:1;iRNA_m5C:0.999536712296799 10500 chr8 26514293 26514293 1 + G A rs1058332 26514273 + 26514253 26514293 41 CTAGAGTGTGGGACCCTGGCCAAGTGCAGGAATGGGCCATG CTAGAGTGTGGGACCCTGGCCAAGTGCAGGAATGGGCCATA < 41bp 1 0.665974021574687 1 0.772988557815552 experiment 0.668051956850626 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26514273 chr8:26514293 . . 0 41 hm5C_associated_SNPs_7858 0 0 1 0 0 Nucleus 1 0.500231643922524 0.454022884368896 0.999536712154951 hm5C_site_10500 DeepMRMD:0.454022884368896;iRNA_m5C:0.999536712154951 10501 chr8 26515400 26515400 1 + C T rs73569815 26515416 + 26515396 26515436 41 AAATCGACAGTGTCTCAGAACTGAATAACTGCAGTGACTTG AAATTGACAGTGTCTCAGAACTGAATAACTGCAGTGACTTG < 41bp 1 0.45274481315919 1 0.112804770469666 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYSL2 ENSG00000092964 UTR3 Human protein_coding chr8:26515416 chr8:26515400 . . 0 5 hm5C_associated_SNPs_7859 0 0 1 0 0 Nucleus 1 0.500231761210964 1 0.999536477578072 hm5C_site_10501 DeepMRMD:1;iRNA_m5C:0.999536477578072 10502 chr8 27369416 27369416 1 + G A rs574326427 27369415 + 27369395 27369435 41 AGTGACATGAGCCATGGGTACGTGACAGTAAAGGTGAGTCA AGTGACATGAGCCATGGGTACATGACAGTAAAGGTGAGTCA < 41bp 1 0.625645600500212 1 0.275936216115952 experiment 0.748708798999575 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27369415 chr8:27369416 nonsynonymous SNV 0.064 4 22 hm5C_associated_SNPs_7862 0 0 1 0 2 Cytosol 1 0.500299602929793 1 0.999400794140414 hm5C_site_10502 DeepMRMD:1;iRNA_m5C:0.999400794140414 10503 chr8 27402373 27402373 1 + G A rs112182784 27402368 + 27402348 27402388 41 GCATAGTTTGGCAGAAAAATCAGCCGTTCATTTAGAAGAAT GCATAGTTTGGCAGAAAAATCAGCCATTCATTTAGAAGAAT < 41bp 1 0.557732982011775 1 0.22804844379425 experiment 0.88453403597645 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EPHX2 ENSG00000120915 UTR3 Human protein_coding chr8:27402368 chr8:27402373 . . 0 26 hm5C_associated_SNPs_7863 0 0 1 0 0 Cytosol 1 0.50023165939024 1 0.99953668121952 hm5C_site_10503 DeepMRMD:1;iRNA_m5C:0.99953668121952 10504 chr8 27491676 27491676 1 + C T rs199997030 27491690 + 27491670 27491710 41 TCCAGCCGCCTGCAGCGGGGCCCTCCTGAGGCCCCAGAGGA TCCAGCTGCCTGCAGCGGGGCCCTCCTGAGGCCCCAGAGGA < 41bp 1 0.132847284432097 1 0.0810327231884003 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control SCARA3 ENSG00000168077 UTR5 Human protein_coding chr8:27491690 chr8:27491676 . . 0 7 hm5C_associated_SNPs_7864 0 0 1 0 1 Cytosol 1 0.5002316439212 1 0.999536712157599 hm5C_site_10504 DeepMRMD:1;iRNA_m5C:0.999536712157599 10505 chr8 27491676 27491676 1 + C T rs199997030 27491691 + 27491671 27491711 41 CCAGCCGCCTGCAGCGGGGCCCTCCTGAGGCCCCAGAGGAA CCAGCTGCCTGCAGCGGGGCCCTCCTGAGGCCCCAGAGGAA < 41bp 1 0.177424041905386 1 0.140509724617004 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SCARA3 ENSG00000168077 UTR5 Human protein_coding chr8:27491691 chr8:27491676 . . 0 6 hm5C_associated_SNPs_7865 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10505 DeepMRMD:1;iRNA_m5C:0.999536712157815 10506 chr8 27528698 27528698 1 + C A rs35928641 27528718 + 27528698 27528738 41 CCCCCGGGGTCTCCAGGGCCCTCAGGGCCTCAGGGAAAACC ACCCCGGGGTCTCCAGGGCCCTCAGGGCCTCAGGGAAAACC < 41bp 1 0.491025260874017 1 0.0773876011371613 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27528718 chr8:27528698 nonsynonymous SNV 0.991 2 1 hm5C_associated_SNPs_7866 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10506 DeepMRMD:1;iRNA_m5C:0.999536712157815 10507 chr8 28048167 28048167 1 + C T rs12675842 28048163 + 28048143 28048183 41 GTGGCGCAATCTCACTGCATCCTCCGCCTCCCGGGTTCAAG GTGGCGCAATCTCACTGCATCCTCTGCCTCCCGGGTTCAAG < 41bp 1 0.129264266201275 1 0.0178674459457397 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ELP3 ENSG00000134014 UTR3 Human protein_coding chr8:28048163 chr8:28048167 . . 0 25 hm5C_associated_SNPs_7867 0 0 1 0 0 Ribosome 1 0.500231643944552 1 0.999536712110896 hm5C_site_10507 DeepMRMD:1;iRNA_m5C:0.999536712110896 10508 chr8 28427998 28427998 1 + T C rs164669 28428014 + 28427994 28428034 41 TAGTTGGGCATGGTGGCGGGCACCTGTAGTCCCAGCCACTC TAGTCGGGCATGGTGGCGGGCACCTGTAGTCCCAGCCACTC < 41bp 1 0.625104011398016 1 0.0230105519294739 experiment 0.749791977203967 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FZD3 ENSG00000104290 UTR3 Human protein_coding chr8:28428014 chr8:28427998 . . 0 5 hm5C_associated_SNPs_7868 0 0 0 0 0 Ribosome 1 0.500231701934326 1 0.999536596131349 hm5C_site_10508 DeepMRMD:1;iRNA_m5C:0.999536596131349 10509 chr8 28427998 28427998 1 + T C rs164669 28428016 + 28427996 28428036 41 GTTGGGCATGGTGGCGGGCACCTGTAGTCCCAGCCACTCGG GTCGGGCATGGTGGCGGGCACCTGTAGTCCCAGCCACTCGG < 41bp 1 0.368553264903622 1 0.0784070491790771 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FZD3 ENSG00000104290 UTR3 Human protein_coding chr8:28428016 chr8:28427998 . . 0 3 hm5C_associated_SNPs_7869 0 0 0 0 0 Ribosome 1 0.500231811813398 1 0.999536376373203 hm5C_site_10509 DeepMRMD:1;iRNA_m5C:0.999536376373203 10510 chr8 28573473 28573473 1 + C T rs141604623 28573455 + 28573435 28573475 41 CATTTTATTTGGTGCCTTGTCTGGGGAGCACACTAACTCTT CATTTTATTTGGTGCCTTGTCTGGGGAGCACACTAACTTTT < 41bp 1 0.655881758118932 1 0.824334561824799 experiment 0.688236483762136 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EXTL3 ENSG00000012232 UTR5 Human protein_coding chr8:28573455 chr8:28573473 . . 0 39 hm5C_associated_SNPs_7870 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643967297 0.351330876350402 0.999536712065405 hm5C_site_10510 DeepMRMD:0.351330876350402;iRNA_m5C:0.999536712065405 10511 chr8 30242416 30242416 1 + C T rs553201780 30242412 + 30242392 30242432 41 TCCTGAGTCGCCCGCCGCCGCCGTCGCAGACTCGCCGCGGG TCCTGAGTCGCCCGCCGCCGCCGTTGCAGACTCGCCGCGGG < 41bp 1 0.518098660803732 1 0.335666239261627 experiment 0.963802678392537 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBPMS-AS1 ENSG00000254109 ncRNA_intronic Human antisense chr8:30242412 chr8:30242416 . . 0 25 hm5C_associated_SNPs_7871 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10511 DeepMRMD:1;iRNA_m5C:0.999536712157815 10512 chr8 30623803 30623803 1 + T G rs115749166 30623821 + 30623801 30623841 41 CTTCCTTTCCCAGACGGCCTCTGGCAGTGGAGGGAGGCCAG CTGCCTTTCCCAGACGGCCTCTGGCAGTGGAGGGAGGCCAG < 41bp 1 0.657909983639411 1 0.558465480804443 experiment 0.684180032721177 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30623821 chr8:30623803 . 0.852 0 3 hm5C_associated_SNPs_7872 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164392099 0.883069038391114 0.99953671215802 hm5C_site_10512 DeepMRMD:0.883069038391114;iRNA_m5C:0.99953671215802 10513 chr8 31024733 31024733 1 + G C rs186424616 31024734 + 31024714 31024754 41 AGAAGCAAGGAAGAAGTAGGCATCAATACTGAGGTATTAAT AGAAGCAAGGAAGAAGTAGCCATCAATACTGAGGTATTAAT < 41bp 1 0.301343878771142 1 0.437572658061981 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WRN ENSG00000165392 CDS Human protein_coding chr8:31024734 chr8:31024733 nonsynonymous SNV 0.199 0 20 hm5C_associated_SNPs_7873 0 0 1 0 1 Cytosol 1 0.500214294895674 1 0.999571410208652 hm5C_site_10513 DeepMRMD:1;iRNA_m5C:0.999571410208652 10514 chr8 37554668 37554668 1 + C A rs76445150 37554680 + 37554660 37554700 41 CAGCTGGACGCCAAGAAGAGCCCCTTGGCGCTGCTGGCTCA CAGCTGGAAGCCAAGAAGAGCCCCTTGGCGCTGCTGGCTCA < 41bp 1 0.156348062048693 1 0.22454622387886 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF703 ENSG00000183779 CDS Human protein_coding chr8:37554680 chr8:37554668 nonsynonymous SNV 0.999 3 9 hm5C_associated_SNPs_7876 0 0 1 0 1 exosome 1 0.500231643929356 1 0.999536712141287 hm5C_site_10514 DeepMRMD:1;iRNA_m5C:0.999536712141287 10515 chr8 37654907 37654907 1 + A G rs73592885 37654887 + 37654867 37654907 41 GGCGCCCGAGGCTCGGGGCGCGCCCGGCTGCCCGCTATCCA GGCGCCCGAGGCTCGGGGCGCGCCCGGCTGCCCGCTATCCG < 41bp 1 0.331254391475848 1 0.473681807518005 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRA2 ENSG00000020181 CDS Human protein_coding chr8:37654887 chr8:37654907 nonsynonymous SNV 0.545 0 41 hm5C_associated_SNPs_7877 0 0 0 0 0 chromatin 1 0.500231643921097 1 0.999536712157806 hm5C_site_10515 DeepMRMD:1;iRNA_m5C:0.999536712157806 10516 chr8 37914689 37914689 1 + C T rs201186533 37914699 + 37914679 37914719 41 CCCACCATTCCGGGGGTCACCAGCCCTTCCAGTGATGAGCC CCCACCATTCTGGGGGTCACCAGCCCTTCCAGTGATGAGCC < 41bp 1 0.549679172899546 1 0.482555270195007 experiment 0.900641654200908 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4EBP1 ENSG00000187840 CDS Human protein_coding chr8:37914699 chr8:37914689 nonsynonymous SNV 0.154 4 11 hm5C_associated_SNPs_7878 0 0 1 0 2 Ribosome 1 0.500231505967125 1 0.999536988065749 hm5C_site_10516 DeepMRMD:1;iRNA_m5C:0.999536988065749 10517 chr8 38829278 38829278 1 + C T rs368513866 38829287 + 38829267 38829307 41 GATCGAGACCGCGGTGAAACCCCGTCTCTACTAAAAATACG GATCGAGACCGTGGTGAAACCCCGTCTCTACTAAAAATACG < 41bp 1 0.55149604608011 1 0.15661033987999 experiment 0.89700790783978 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHA2 ENSG00000253645 ncRNA_intronic Human antisense chr8:38829287 chr8:38829278 . . 0 12 hm5C_associated_SNPs_7879 0 0 0 0 0 Ribosome 1 0.500231680116089 1 0.999536639767821 hm5C_site_10517 DeepMRMD:1;iRNA_m5C:0.999536639767821 10518 chr8 38831059 38831059 1 + A G rs7295 38831058 + 38831038 38831078 41 GAGCTTTGTTTATAAACTTTCAAAATGTCGGAAGTGGACAG GAGCTTTGTTTATAAACTTTCGAAATGTCGGAAGTGGACAG < 41bp 1 0.569602656231653 1 0.88218766450882 experiment 0.860794687536695 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHA2 ENSG00000169499 UTR3 Human protein_coding chr8:38831058 chr8:38831059 . . 0 22 hm5C_associated_SNPs_7880 0 0 1 0 0 Ribosome 1 0.500231643921092 0.23562467098236 0.999536712157815 hm5C_site_10518 DeepMRMD:0.23562467098236;iRNA_m5C:0.999536712157815 10519 chr8 38899570 38899570 1 + T C rs78451751 38899577 + 38899557 38899597 41 CTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG CTGATGAAGCCTACAGTGCTCCCTCCTGTGGTAATAAGTTG < 41bp 1 0.0967992519329792 1 0.0946750640869141 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899577 chr8:38899570 synonymous SNV . 0 14 hm5C_associated_SNPs_7881 1 0 1 0 1 Ribosome 1 0.500231643447812 1 0.999536713104376 hm5C_site_10519 DeepMRMD:1;iRNA_m5C:0.999536713104376 Cone-Rod Dystrophy, Recessive Cone-Rod Dystrophy, Recessive 10520 chr8 38899570 38899570 1 + T C rs78451751 38899581 + 38899561 38899601 41 TGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTGGTGG TGAAGCCTACAGTGCTCCCTCCTGTGGTAATAAGTTGGTGG < 41bp 1 0.180695872976099 1 0.597919225692749 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899581 chr8:38899570 synonymous SNV . 0 10 hm5C_associated_SNPs_7882 1 0 1 0 1 Ribosome 1 0.50023164393368 0.804161548614502 0.99953671213264 hm5C_site_10520 DeepMRMD:0.804161548614502;iRNA_m5C:0.99953671213264 Cone-Rod Dystrophy, Recessive Cone-Rod Dystrophy, Recessive 10521 chr8 41355096 41355096 1 + C T rs17656952 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTTGGCGGCCAGTCATATCTCGAAGGTTGT < 41bp 1 0.13170485894955 1 0.165201902389526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355096 synonymous SNV . 0 14 hm5C_associated_SNPs_7883 0 0 1 2 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_10521 DeepMRMD:1;iRNA_m5C:0.999536712157816 10522 chr8 41401293 41401293 1 + C T rs542689700 41401296 + 41401276 41401316 41 TGGCAGTGGTGTGAACACGGCTCACTGCAGCCTCCACCTCC TGGCAGTGGTGTGAACATGGCTCACTGCAGCCTCCACCTCC < 41bp 1 0.604361944751938 1 0.0350070297718048 experiment 0.791276110496125 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC102723729 ENSG00000253133;ENSG00000253174 ncRNA_intronic Human other chr8:41401296 chr8:41401293 . . 0 18 hm5C_associated_SNPs_7885 0 0 0 0 0 unknown 1 0.500231807027844 1 0.999536385944312 hm5C_site_10522 DeepMRMD:1;iRNA_m5C:0.999536385944312 10523 chr8 41401293 41401293 1 + C T rs542689700 41401298 + 41401278 41401318 41 GCAGTGGTGTGAACACGGCTCACTGCAGCCTCCACCTCCTG GCAGTGGTGTGAACATGGCTCACTGCAGCCTCCACCTCCTG < 41bp 1 0.591249816363832 1 0.0493588447570801 experiment 0.817500367272336 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC102723729 ENSG00000253133;ENSG00000253174 ncRNA_intronic Human other chr8:41401298 chr8:41401293 . . 0 16 hm5C_associated_SNPs_7886 0 0 0 0 0 unknown 1 0.500231643924969 1 0.999536712150062 hm5C_site_10523 DeepMRMD:1;iRNA_m5C:0.999536712150062 10524 chr8 41401293 41401293 1 + C T rs542689700 41401306 + 41401286 41401326 41 GTGAACACGGCTCACTGCAGCCTCCACCTCCTGGGTTCAAG GTGAACATGGCTCACTGCAGCCTCCACCTCCTGGGTTCAAG < 41bp 1 0.156022249692179 1 0.0785146057605743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC102723729 ENSG00000253133;ENSG00000253174 ncRNA_intronic Human other chr8:41401306 chr8:41401293 . . 0 8 hm5C_associated_SNPs_7888 0 0 0 0 0 unknown 1 0.500231643921068 1 0.999536712157863 hm5C_site_10524 DeepMRMD:1;iRNA_m5C:0.999536712157863 10525 chr8 41401293 41401293 1 + C T rs542689700 41401309 + 41401289 41401329 41 AACACGGCTCACTGCAGCCTCCACCTCCTGGGTTCAAGAGA AACATGGCTCACTGCAGCCTCCACCTCCTGGGTTCAAGAGA < 41bp 1 0.150389121697779 1 0.0663697123527527 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC102723729 ENSG00000253133;ENSG00000253174 ncRNA_intronic Human other chr8:41401309 chr8:41401293 . . 0 5 hm5C_associated_SNPs_7890 0 0 0 0 0 unknown 1 0.500231466120747 1 0.999537067758506 hm5C_site_10525 DeepMRMD:1;iRNA_m5C:0.999537067758506 10526 chr8 41401293 41401293 1 + C T rs542689700 41401310 + 41401290 41401330 41 ACACGGCTCACTGCAGCCTCCACCTCCTGGGTTCAAGAGAT ACATGGCTCACTGCAGCCTCCACCTCCTGGGTTCAAGAGAT < 41bp 1 0.444164152133385 1 0.252003073692322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC102723729 ENSG00000253133;ENSG00000253174 ncRNA_intronic Human other chr8:41401310 chr8:41401293 . . 0 4 hm5C_associated_SNPs_7891 0 0 0 0 0 unknown 1 0.500231643927878 1 0.999536712144244 hm5C_site_10526 DeepMRMD:1;iRNA_m5C:0.999536712144244 10527 chr8 41401356 41401356 1 + C G rs142659148 41401338 + 41401318 41401358 41 GGGTTCAAGAGATTCTCCTGCCCCAGCCTCCCGAGTAGCTG GGGTTCAAGAGATTCTCCTGCCCCAGCCTCCCGAGTAGGTG < 41bp 1 0.536382034762111 1 0.0848592817783356 experiment 0.927235930475778 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC102723729 ENSG00000253133;ENSG00000253174 ncRNA_intronic Human other chr8:41401338 chr8:41401356 . . 0 39 hm5C_associated_SNPs_7892 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10527 DeepMRMD:1;iRNA_m5C:0.999536712157815 10528 chr8 41401356 41401356 1 + C G rs142659148 41401339 + 41401319 41401359 41 GGTTCAAGAGATTCTCCTGCCCCAGCCTCCCGAGTAGCTGG GGTTCAAGAGATTCTCCTGCCCCAGCCTCCCGAGTAGGTGG < 41bp 1 0.45533758584573 1 0.227573394775391 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC102723729 ENSG00000253133;ENSG00000253174 ncRNA_intronic Human other chr8:41401339 chr8:41401356 . . 0 38 hm5C_associated_SNPs_7893 0 0 0 0 0 unknown 1 0.500231643807982 1 0.999536712384035 hm5C_site_10528 DeepMRMD:1;iRNA_m5C:0.999536712384035 10529 chr8 41401356 41401356 1 + C G rs142659148 41401340 + 41401320 41401360 41 GTTCAAGAGATTCTCCTGCCCCAGCCTCCCGAGTAGCTGGT GTTCAAGAGATTCTCCTGCCCCAGCCTCCCGAGTAGGTGGT < 41bp 1 0.303839133387342 1 0.225621193647385 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC102723729 ENSG00000253133;ENSG00000253174 ncRNA_intronic Human other chr8:41401340 chr8:41401356 . . 0 37 hm5C_associated_SNPs_7894 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10529 DeepMRMD:1;iRNA_m5C:0.999536712157815 10530 chr8 41401356 41401356 1 + C G rs142659148 41401341 + 41401321 41401361 41 TTCAAGAGATTCTCCTGCCCCAGCCTCCCGAGTAGCTGGTA TTCAAGAGATTCTCCTGCCCCAGCCTCCCGAGTAGGTGGTA < 41bp 1 0.52168682892899 1 0.450033336877823 experiment 0.95662634214202 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC102723729 ENSG00000253133;ENSG00000253174 ncRNA_intronic Human other chr8:41401341 chr8:41401356 . . 0 36 hm5C_associated_SNPs_7895 0 0 0 0 0 unknown 1 0.500231643917859 1 0.999536712164282 hm5C_site_10530 DeepMRMD:1;iRNA_m5C:0.999536712164282 10531 chr8 41401356 41401356 1 + C G rs142659148 41401344 + 41401324 41401364 41 AAGAGATTCTCCTGCCCCAGCCTCCCGAGTAGCTGGTATTA AAGAGATTCTCCTGCCCCAGCCTCCCGAGTAGGTGGTATTA < 41bp 1 0.0727439444302005 1 0.0610706210136414 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC102723729 ENSG00000253133;ENSG00000253174 ncRNA_intronic Human other chr8:41401344 chr8:41401356 . . 0 33 hm5C_associated_SNPs_7896 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10531 DeepMRMD:1;iRNA_m5C:0.999536712157815 10532 chr8 41401356 41401356 1 + C G rs142659148 41401345 + 41401325 41401365 41 AGAGATTCTCCTGCCCCAGCCTCCCGAGTAGCTGGTATTAT AGAGATTCTCCTGCCCCAGCCTCCCGAGTAGGTGGTATTAT < 41bp 1 0.284296147594431 1 0.357252836227417 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC102723729 ENSG00000253133;ENSG00000253174 ncRNA_intronic Human other chr8:41401345 chr8:41401356 . . 0 32 hm5C_associated_SNPs_7897 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10532 DeepMRMD:1;iRNA_m5C:0.999536712157815 10533 chr8 42226805 42226805 1 + C G rs3136797 42226797 + 42226777 42226817 41 TGTTCATTTTAGGGTGTTTGCCAGCTTCCCAGTAAAAATGA TGTTCATTTTAGGGTGTTTGCCAGCTTCGCAGTAAAAATGA < 41bp 1 0.314359608668353 1 0.412336885929108 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLB ENSG00000070501 CDS Human protein_coding chr8:42226797 chr8:42226805 nonsynonymous SNV 0.978 1 29 hm5C_associated_SNPs_7898 0 1 1 0 1 Cytosol 1 0.500231408286902 1 0.999537183426196 hm5C_site_10533 DeepMRMD:1;iRNA_m5C:0.999537183426196 10534 chr8 42752245 42752245 1 + G A rs367925456 42752256 + 42752236 42752276 41 TGGCCAGGCGGTAGGCGCTGCCTGGCCGCGGCGGGGAAGAT TGGCCAGGCAGTAGGCGCTGCCTGGCCGCGGCGGGGAAGAT < 41bp 1 0.365286193079714 1 0.0496912896633148 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HOOK3 ENSG00000168172 UTR5 Human protein_coding chr8:42752256 chr8:42752245 . . 0 10 hm5C_associated_SNPs_7901 0 0 1 0 1 Ribosome 1 0.50023164378142 1 0.999536712437159 hm5C_site_10534 DeepMRMD:1;iRNA_m5C:0.999536712437159 10535 chr8 42752245 42752245 1 + G A rs367925456 42752261 + 42752241 42752281 41 AGGCGGTAGGCGCTGCCTGGCCGCGGCGGGGAAGATGTTCA AGGCAGTAGGCGCTGCCTGGCCGCGGCGGGGAAGATGTTCA < 41bp 1 0.56493690548946 1 0.271091401576996 experiment 0.870126189021079 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HOOK3 ENSG00000168172 UTR5 Human protein_coding chr8:42752261 chr8:42752245 . . 0 5 hm5C_associated_SNPs_7903 0 0 1 0 1 Ribosome 1 0.500231643921189 1 0.999536712157621 hm5C_site_10535 DeepMRMD:1;iRNA_m5C:0.999536712157621 10536 chr8 42876842 42876842 1 + C T rs191946581 42876850 + 42876830 42876870 41 GAGATGATGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTG GAGATGATGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTG < 41bp 1 0.260037573398467 1 0.105800002813339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42876850 chr8:42876842 . . 0 13 hm5C_associated_SNPs_7904 0 0 0 0 0 Ribosome 1 0.500232064879107 1 0.999535870241786 hm5C_site_10536 DeepMRMD:1;iRNA_m5C:0.999535870241786 10537 chr8 42876842 42876842 1 + C T rs191946581 42876852 + 42876832 42876872 41 GATGATGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGC GATGATGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGC < 41bp 1 0.269193106956253 1 0.317842185497284 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42876852 chr8:42876842 . . 0 11 hm5C_associated_SNPs_7905 0 0 0 0 0 Ribosome 1 0.500231569963037 1 0.999536860073926 hm5C_site_10537 DeepMRMD:1;iRNA_m5C:0.999536860073926 10538 chr8 42876842 42876842 1 + C T rs191946581 42876853 + 42876833 42876873 41 ATGATGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCG ATGATGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCG < 41bp 1 0.314140459942255 1 0.387031465768814 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42876853 chr8:42876842 . . 0 10 hm5C_associated_SNPs_7906 0 0 0 0 0 Ribosome 1 0.500231643920804 1 0.999536712158392 hm5C_site_10538 DeepMRMD:1;iRNA_m5C:0.999536712158392 10539 chr8 42876842 42876842 1 + C T rs191946581 42876854 + 42876834 42876874 41 TGATGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGC TGATGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGC < 41bp 1 0.38925146276705 1 0.842900156974792 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42876854 chr8:42876842 . . 0 9 hm5C_associated_SNPs_7907 0 0 0 0 0 Ribosome 1 0.500228667533402 0.314199686050416 0.999542664933195 hm5C_site_10539 DeepMRMD:0.314199686050416;iRNA_m5C:0.999542664933195 10540 chr8 42876936 42876936 1 + T C rs370071322 42876949 + 42876929 42876969 41 AGCCTCCTGAGTAGCGGGGACTACAGGCGCCCGCCACTACG AGCCTCCCGAGTAGCGGGGACTACAGGCGCCCGCCACTACG < 41bp 1 0.531623216306747 1 0.300084412097931 experiment 0.936753567386506 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42876949 chr8:42876936 . . 0 8 hm5C_associated_SNPs_7909 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_10540 DeepMRMD:1;iRNA_m5C:0.999536712157816 10541 chr8 42876936 42876936 1 + T C rs370071322 42876956 + 42876936 42876976 41 TGAGTAGCGGGGACTACAGGCGCCCGCCACTACGCCCGACT CGAGTAGCGGGGACTACAGGCGCCCGCCACTACGCCCGACT < 41bp 1 0.276141671606955 1 0.501395225524902 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42876956 chr8:42876936 . . 0 1 hm5C_associated_SNPs_7911 0 0 0 0 0 Ribosome 1 0.500231643921092 0.997209548950196 0.999536712157815 hm5C_site_10541 DeepMRMD:0.997209548950196;iRNA_m5C:0.999536712157815 10542 chr8 42876970 42876970 1 + C G rs578063057 42876956 + 42876936 42876976 41 TGAGTAGCGGGGACTACAGGCGCCCGCCACTACGCCCGACT TGAGTAGCGGGGACTACAGGCGCCCGCCACTACGGCCGACT < 41bp 1 0.26010238691407 1 0.393176794052124 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42876956 chr8:42876970 . . 0 35 hm5C_associated_SNPs_7913 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10542 DeepMRMD:1;iRNA_m5C:0.999536712157815 10543 chr8 42878090 42878090 1 + C T rs538956750 42878089 + 42878069 42878109 41 GCCAGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGG GCCAGGTGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGG < 41bp 1 0.358715470093024 1 0.0583818852901459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42878089 chr8:42878090 . . 0 22 hm5C_associated_SNPs_7914 0 0 0 0 0 Ribosome 1 0.500233642493676 1 0.999532715012647 hm5C_site_10543 DeepMRMD:1;iRNA_m5C:0.999532715012647 10544 chr8 42878090 42878090 1 + C T rs538956750 42878097 + 42878077 42878117 41 CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAA CGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCAA < 41bp 1 0.309003217754239 1 0.353792428970337 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42878097 chr8:42878090 . . 0 14 hm5C_associated_SNPs_7915 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10544 DeepMRMD:1;iRNA_m5C:0.999536712157815 10545 chr8 42878090 42878090 1 + C T rs538956750 42878098 + 42878078 42878118 41 GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAG GGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCAAG < 41bp 1 0.182531848616162 1 0.150549292564392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42878098 chr8:42878090 . . 0 13 hm5C_associated_SNPs_7916 0 0 0 0 0 Ribosome 1 0.500236542683882 1 0.999526914632237 hm5C_site_10545 DeepMRMD:1;iRNA_m5C:0.999526914632237 10546 chr8 42878090 42878090 1 + C T rs538956750 42878099 + 42878079 42878119 41 GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGG GTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCAAGG < 41bp 1 0.689139780463009 1 0.525982022285461 experiment 0.621720439073982 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42878099 chr8:42878090 . . 0 12 hm5C_associated_SNPs_7917 0 0 0 0 0 Ribosome 1 0.500231643921092 0.948035955429078 0.999536712157815 hm5C_site_10546 DeepMRMD:0.948035955429078;iRNA_m5C:0.999536712157815 10547 chr8 42878090 42878090 1 + C T rs538956750 42878102 + 42878082 42878122 41 GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAG GCTCACGCTTGTAATCCCAGCACTTTGGGAGGCCAAGGCAG < 41bp 1 0.307702519482964 1 0.121257990598679 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42878102 chr8:42878090 . . 0 9 hm5C_associated_SNPs_7918 0 0 0 0 0 Ribosome 1 0.500231782525716 1 0.999536434948568 hm5C_site_10547 DeepMRMD:1;iRNA_m5C:0.999536434948568 10548 chr8 42878090 42878090 1 + C T rs538956750 42878104 + 42878084 42878124 41 TCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGC TCACGCTTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGC < 41bp 1 0.246131965012429 1 0.272116929292679 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42878104 chr8:42878090 . . 0 7 hm5C_associated_SNPs_7919 0 0 0 0 0 Ribosome 1 0.500231670968508 1 0.999536658062984 hm5C_site_10548 DeepMRMD:1;iRNA_m5C:0.999536658062984 10549 chr8 42878102 42878102 1 + C T rs369108834 42878089 + 42878069 42878109 41 GCCAGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGG GCCAGGTGCGGTGGCTCACGCCTGTAATCCCAGTACTTTGG < 41bp 1 0.19491095035132 1 0.104128777980804 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42878089 chr8:42878102 . . 0 34 hm5C_associated_SNPs_7920 0 0 0 0 0 Ribosome 1 0.500232035245488 1 0.999535929509024 hm5C_site_10549 DeepMRMD:1;iRNA_m5C:0.999535929509024 Depressive symptoms 10550 chr8 42878102 42878102 1 + C T rs369108834 42878097 + 42878077 42878117 41 CGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAA CGGTGGCTCACGCCTGTAATCCCAGTACTTTGGGAGGCCAA < 41bp 1 0.36563833352877 1 0.528014242649078 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42878097 chr8:42878102 . . 0 26 hm5C_associated_SNPs_7921 0 0 0 0 0 Ribosome 1 0.500231643919414 0.943971514701844 0.999536712161172 hm5C_site_10550 DeepMRMD:0.943971514701844;iRNA_m5C:0.999536712161172 10551 chr8 42878102 42878102 1 + C T rs369108834 42878098 + 42878078 42878118 41 GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAG GGTGGCTCACGCCTGTAATCCCAGTACTTTGGGAGGCCAAG < 41bp 1 0.241975852078605 1 0.23230168223381 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42878098 chr8:42878102 . . 0 25 hm5C_associated_SNPs_7922 0 0 0 0 0 Ribosome 1 0.500241595937617 1 0.999516808124766 hm5C_site_10551 DeepMRMD:1;iRNA_m5C:0.999516808124766 10552 chr8 42878102 42878102 1 + C T rs369108834 42878099 + 42878079 42878119 41 GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGG GTGGCTCACGCCTGTAATCCCAGTACTTTGGGAGGCCAAGG < 41bp 1 0.554143628331417 1 0.580120146274567 experiment 0.891712743337166 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42878099 chr8:42878102 . . 0 24 hm5C_associated_SNPs_7923 0 0 0 0 0 Ribosome 1 0.500231635411347 0.839759707450866 0.999536729177307 hm5C_site_10552 DeepMRMD:0.839759707450866;iRNA_m5C:0.999536729177307 10553 chr8 42878102 42878102 1 + C T rs369108834 42878104 + 42878084 42878124 41 TCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGC TCACGCCTGTAATCCCAGTACTTTGGGAGGCCAAGGCAGGC < 41bp 1 0.261743895583343 1 0.208963245153427 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42878104 chr8:42878102 . . 0 19 hm5C_associated_SNPs_7924 0 0 0 0 0 Ribosome 1 0.500231643921148 1 0.999536712157703 hm5C_site_10553 DeepMRMD:1;iRNA_m5C:0.999536712157703 10554 chr8 42878102 42878102 1 + C T rs369108834 42878114 + 42878094 42878134 41 AATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACCTG AATCCCAGTACTTTGGGAGGCCAAGGCAGGCGGATCACCTG < 41bp 1 0.675373477600142 1 0.750708103179932 experiment 0.649253044799716 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42878114 chr8:42878102 . . 0 9 hm5C_associated_SNPs_7925 0 0 0 0 0 Ribosome 1 0.500231643921092 0.498583793640136 0.999536712157815 hm5C_site_10554 DeepMRMD:0.498583793640136;iRNA_m5C:0.999536712157815 10555 chr8 48877227 48877227 1 + T C rs145966797 48877243 + 48877223 48877263 41 ACCATTCAACGCATTGAAGACTAAGAATATGAGAAACCTGA ACCACTCAACGCATTGAAGACTAAGAATATGAGAAACCTGA < 41bp 1 0.182768517911881 1 0.378124624490738 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48877243 chr8:48877227 nonsynonymous SNV 0.983 2 5 hm5C_associated_SNPs_7927 0 0 1 3 1 Cytosol 1 0.500231656940019 1 0.999536686119963 hm5C_site_10555 DeepMRMD:1;iRNA_m5C:0.999536686119963 10556 chr8 48889535 48889535 1 + T C rs17334542 48889518 + 48889498 48889538 41 GTATCTGTTTTCATTTTTTTCACGTTATAAATAAAAATACT GTATCTGTTTTCATTTTTTTCACGTTATAAATAAAAACACT < 41bp 1 0.381431338173762 1 0.407413095235825 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCM4 ENSG00000104738 UTR3 Human protein_coding chr8:48889518 chr8:48889535 . . 0 38 hm5C_associated_SNPs_7928 0 0 1 1 0 Cytosol 1 0.500231651404892 1 0.999536697190217 hm5C_site_10556 DeepMRMD:1;iRNA_m5C:0.999536697190217 10557 chr8 54793603 54793603 1 + G A rs112791546 54793600 + 54793580 54793620 41 GCACGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCG GCACGGCGGACGGAGGCGAGCCGACCGGGGCTTCCTCCCCG < 41bp 1 0.425226739428523 1 0.168008387088776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793600 chr8:54793603 nonsynonymous SNV 0.196 0 24 hm5C_associated_SNPs_7929 0 0 0 0 1 chromatin 1 0.500231639805219 1 0.999536720389561 hm5C_site_10557 DeepMRMD:1;iRNA_m5C:0.999536720389561 10558 chr8 54793603 54793603 1 + G A rs112791546 54793601 + 54793581 54793621 41 CACGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCGG CACGGCGGACGGAGGCGAGCCGACCGGGGCTTCCTCCCCGG < 41bp 1 0.630400210490625 1 0.609808623790741 experiment 0.73919957901875 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793601 chr8:54793603 nonsynonymous SNV 0.196 0 23 hm5C_associated_SNPs_7930 0 0 0 0 1 chromatin 1 0.500231643921093 0.780382752418518 0.999536712157815 hm5C_site_10558 DeepMRMD:0.780382752418518;iRNA_m5C:0.999536712157815 10559 chr8 54793603 54793603 1 + G A rs112791546 54793618 + 54793598 54793638 41 AGCCGGCCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGT AGCCGACCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGT < 41bp 1 0.431493420750763 1 0.42524516582489 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793618 chr8:54793603 nonsynonymous SNV 0.196 0 6 hm5C_associated_SNPs_7932 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_10559 DeepMRMD:1;iRNA_m5C:0.999536712157815 10560 chr8 54793603 54793603 1 + G A rs112791546 54793619 + 54793599 54793639 41 GCCGGCCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGTG GCCGACCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGTG < 41bp 1 0.697277882612398 1 0.492544442415237 experiment 0.605444234775205 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793619 chr8:54793603 nonsynonymous SNV 0.196 0 5 hm5C_associated_SNPs_7933 0 0 0 0 1 chromatin 1 0.500230073197014 1 0.999539853605973 hm5C_site_10560 DeepMRMD:1;iRNA_m5C:0.999539853605973 10561 chr8 54793603 54793603 1 + G A rs112791546 54793622 + 54793602 54793642 41 GGCCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGTGGGC GACCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGTGGGC < 41bp 1 0.293458739176256 1 0.377801328897476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793622 chr8:54793603 nonsynonymous SNV 0.196 0 2 hm5C_associated_SNPs_7934 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_10561 DeepMRMD:1;iRNA_m5C:0.999536712157815 10562 chr8 56866452 56866452 1 + G A rs2227980 56866453 + 56866433 56866473 41 TTAGTCCCAAGCCACAGAAGCCATGGGATAAAGATGCCTGG TTAGTCCCAAGCCACAGAAACCATGGGATAAAGATGCCTGG < 41bp 1 0.133566549020738 1 0.319285571575165 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56866453 chr8:56866452 synonymous SNV . 0 20 hm5C_associated_SNPs_7935 0 0 1 0 2 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_10562 DeepMRMD:1;iRNA_m5C:0.99953671215782 10563 chr8 61533373 61533373 1 + T C rs368529941 61533362 + 61533342 61533382 41 GTCTAGCTGCCCAACGGGGCCTACTCACTTATTCTTTCACC GTCTAGCTGCCCAACGGGGCCTACTCACTTACTCTTTCACC < 41bp 1 0.43928056696383 1 0.0357897877693176 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB2A ENSG00000104388 UTR3 Human protein_coding chr8:61533362 chr8:61533373 . . 0 32 hm5C_associated_SNPs_7936 0 0 1 1 0 Ribosome 1 0.500231643920961 1 0.999536712158078 hm5C_site_10563 DeepMRMD:1;iRNA_m5C:0.999536712158078 10564 chr8 64099240 64099240 1 + G A rs61740399 64099222 + 64099202 64099242 41 TTTGAGCAGCAGTGGTATGACTAGCATTGCAACCAATAGTG TTTGAGCAGCAGTGGTATGACTAGCATTGCAACCAATAATG < 41bp 1 0.652564659460727 1 0.113370835781097 experiment 0.694870681078547 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control YTHDF3 ENSG00000185728 CDS Human protein_coding chr8:64099222 chr8:64099240 nonsynonymous SNV 0.991 0 39 hm5C_associated_SNPs_7937 0 0 1 0 0 chromatin 1 0.500208785914015 1 0.99958242817197 hm5C_site_10564 DeepMRMD:1;iRNA_m5C:0.99958242817197 10565 chr8 64099587 64099587 1 + C T rs568180760 64099584 + 64099564 64099604 41 AAGGACCTCAGCCACAGGCCCAGCCTCACCAAGTGCAGCCT AAGGACCTCAGCCACAGGCCCAGTCTCACCAAGTGCAGCCT < 41bp 1 0.174174619791384 1 0.0640577077865601 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control YTHDF3 ENSG00000185728 CDS Human protein_coding chr8:64099584 chr8:64099587 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_7938 0 0 1 0 0 chromatin 1 0.500231649897513 1 0.999536700204974 hm5C_site_10565 DeepMRMD:1;iRNA_m5C:0.999536700204974 10566 chr8 64124956 64124956 1 + G A rs7464 64124955 + 64124935 64124975 41 GCTGTGTTCTTTTTGAATACCGTGCATGGGGGTTAAGCTGA GCTGTGTTCTTTTTGAATACCATGCATGGGGGTTAAGCTGA < 41bp 1 0.292761599097186 1 0.146326631307602 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control YTHDF3 ENSG00000185728 UTR3 Human protein_coding chr8:64124955 chr8:64124956 . . 0 22 hm5C_associated_SNPs_7939 0 0 1 0 0 chromatin 1 0.500231643485874 1 0.999536713028252 hm5C_site_10566 DeepMRMD:1;iRNA_m5C:0.999536713028252 10567 chr8 67026244 67026244 1 + G A rs111543839 67026224 + 67026204 67026244 41 CGGGAAGCTGTGCCCGCTCCCTTCGATAGCTCAGCTGGTAG CGGGAAGCTGTGCCCGCTCCCTTCGATAGCTCAGCTGGTAA < 41bp 1 0.531644196193229 1 0.64430183172226 experiment 0.936711607613542 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control DNAJC5B;TRIM55 ENSG00000253190 ncRNA_intronic Human lincRNA chr8:67026224 chr8:67026244 . . 0 41 hm5C_associated_SNPs_7941 0 0 1 0 0 unknown 1 0.500231644824836 0.71139633655548 0.999536710350327 hm5C_site_10567 DeepMRMD:0.71139633655548;iRNA_m5C:0.999536710350327 10568 chr8 67026244 67026244 1 + G A rs111543839 67026227 + 67026207 67026247 41 GAAGCTGTGCCCGCTCCCTTCGATAGCTCAGCTGGTAGAGC GAAGCTGTGCCCGCTCCCTTCGATAGCTCAGCTGGTAAAGC < 41bp 1 0.528502856054905 1 0.308052390813828 experiment 0.94299428789019 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target DNAJC5B;TRIM55 ENSG00000253190 ncRNA_intronic Human lincRNA chr8:67026227 chr8:67026244 . . 0 38 hm5C_associated_SNPs_7942 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10568 DeepMRMD:1;iRNA_m5C:0.999536712157815 10569 chr8 67026244 67026244 1 + G A rs111543839 67026235 + 67026215 67026255 41 GCCCGCTCCCTTCGATAGCTCAGCTGGTAGAGCGGAGGACT GCCCGCTCCCTTCGATAGCTCAGCTGGTAAAGCGGAGGACT < 41bp 1 0.596100751177741 1 0.31552129983902 experiment 0.807798497644518 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control DNAJC5B;TRIM55 ENSG00000253190 ncRNA_intronic Human lincRNA chr8:67026235 chr8:67026244 . . 0 30 hm5C_associated_SNPs_7944 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10569 DeepMRMD:1;iRNA_m5C:0.999536712157815 Blood protein levels 10570 chr8 67026244 67026244 1 + G A rs111543839 67026238 + 67026218 67026258 41 CGCTCCCTTCGATAGCTCAGCTGGTAGAGCGGAGGACTGTA CGCTCCCTTCGATAGCTCAGCTGGTAAAGCGGAGGACTGTA < 41bp 1 0.569590256834401 1 0.305661618709564 experiment 0.860819486331198 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target DNAJC5B;TRIM55 ENSG00000253190 ncRNA_intronic Human lincRNA chr8:67026238 chr8:67026244 . . 0 27 hm5C_associated_SNPs_7945 0 0 1 0 0 unknown 1 0.500231643816325 1 0.99953671236735 hm5C_site_10570 DeepMRMD:1;iRNA_m5C:0.99953671236735 10571 chr8 67026244 67026244 1 + G A rs111543839 67026263 + 67026243 67026283 41 AGAGCGGAGGACTGTAGGCGCGCGCCCGTGGCCATCCTTAG AAAGCGGAGGACTGTAGGCGCGCGCCCGTGGCCATCCTTAG < 41bp 1 0.653753552511966 1 0.357732772827148 experiment 0.692492894976068 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target DNAJC5B;TRIM55 ENSG00000253190 ncRNA_intronic Human lincRNA chr8:67026263 chr8:67026244 . . 0 2 hm5C_associated_SNPs_7948 0 0 1 0 0 unknown 1 0.500231619828665 1 0.999536760342671 hm5C_site_10571 DeepMRMD:1;iRNA_m5C:0.999536760342671 10572 chr8 67341362 67341362 1 + G A rs144911629 67341375 + 67341355 67341395 41 CGAGCCGGAGCCATGGAGGGCCAGAGCGTGGAGGAGCTGCT CGAGCCGAAGCCATGGAGGGCCAGAGCGTGGAGGAGCTGCT < 41bp 1 0.541879592074249 1 0.356085419654846 experiment 0.916240815851502 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRS1 ENSG00000179041 UTR5 Human protein_coding chr8:67341375 chr8:67341362 . . 0 8 hm5C_associated_SNPs_7949 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10572 DeepMRMD:1;iRNA_m5C:0.999536712157815 10573 chr8 67341378 67341378 1 + G A rs3739334 67341375 + 67341355 67341395 41 CGAGCCGGAGCCATGGAGGGCCAGAGCGTGGAGGAGCTGCT CGAGCCGGAGCCATGGAGGGCCAAAGCGTGGAGGAGCTGCT < 41bp 1 0.324747183151594 1 0.394658833742142 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRS1 ENSG00000179041 CDS Human protein_coding chr8:67341375 chr8:67341378 synonymous SNV . 0 24 hm5C_associated_SNPs_7950 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10573 DeepMRMD:1;iRNA_m5C:0.999536712157815 10574 chr8 68074137 68074137 1 + G A rs16933182 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGACAGCATCATACATTCCTTTATTCATGTATGTACTTT < 41bp 1 0.251894460447583 1 0.025249183177948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074137 nonsynonymous SNV 0.999 0 17 hm5C_associated_SNPs_7951 1 0 0 0 2 Cytosol 1 0.500231663635864 1 0.999536672728272 hm5C_site_10574 DeepMRMD:1;iRNA_m5C:0.999536672728272 not specified not specified 10575 chr8 74235980 74235980 1 + A C rs7814695 74235974 + 74235954 74235994 41 ACGGCTCACTGCAATCTCTGCCTCCCAGTTTCAAGTGATTC ACGGCTCACTGCAATCTCTGCCTCCCCGTTTCAAGTGATTC < 41bp 1 0.020794232798513 1 0.0574997961521149 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RDH10-AS1 ENSG00000250295 ncRNA_intronic Human antisense chr8:74235974 chr8:74235980 . . 0 27 hm5C_associated_SNPs_7953 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10575 DeepMRMD:1;iRNA_m5C:0.999536712157815 10576 chr8 74894612 74894612 1 + G A rs140127609 74894626 + 74894606 74894646 41 ACAAGCGACTCATTGACTTGCGCAGTCCTCAGATAGTTAAG ACAAGCAACTCATTGACTTGCGCAGTCCTCAGATAGTTAAG < 41bp 1 0.654449056976204 1 0.238932639360428 experiment 0.691101886047593 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM70 ENSG00000244295 ncRNA_exonic Human processed_pseudogene chr8:74894626 chr8:74894612 . . 0 7 hm5C_associated_SNPs_7954 0 0 0 0 0 Ribosome 1 0.500231644186402 1 0.999536711627196 hm5C_site_10576 DeepMRMD:1;iRNA_m5C:0.999536711627196 10577 chr8 74894612 74894612 1 + G A rs140127609 74894628 + 74894608 74894648 41 AAGCGACTCATTGACTTGCGCAGTCCTCAGATAGTTAAGCA AAGCAACTCATTGACTTGCGCAGTCCTCAGATAGTTAAGCA < 41bp 1 0.194040323390957 1 0.345820009708405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM70 ENSG00000244295 ncRNA_exonic Human processed_pseudogene chr8:74894628 chr8:74894612 . . 0 5 hm5C_associated_SNPs_7955 0 0 0 0 0 Ribosome 1 0.500231643921215 1 0.999536712157569 hm5C_site_10577 DeepMRMD:1;iRNA_m5C:0.999536712157569 10578 chr8 74894627 74894627 1 + G A rs6472811 74894626 + 74894606 74894646 41 ACAAGCGACTCATTGACTTGCGCAGTCCTCAGATAGTTAAG ACAAGCGACTCATTGACTTGCACAGTCCTCAGATAGTTAAG < 41bp 1 0.57586062960565 1 0.229366362094879 experiment 0.848278740788699 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM70 ENSG00000244295 ncRNA_exonic Human processed_pseudogene chr8:74894626 chr8:74894627 . . 0 22 hm5C_associated_SNPs_7956 1 0 0 0 0 Ribosome 1 0.500231646008564 1 0.999536707982873 hm5C_site_10578 DeepMRMD:1;iRNA_m5C:0.999536707982873 Mitochondrial Complex V (ATP Synthase) Deficiency, Nuclear Type Mitochondrial Complex V (ATP Synthase) Deficiency, Nuclear Type 10579 chr8 74894627 74894627 1 + G A rs6472811 74894628 + 74894608 74894648 41 AAGCGACTCATTGACTTGCGCAGTCCTCAGATAGTTAAGCA AAGCGACTCATTGACTTGCACAGTCCTCAGATAGTTAAGCA < 41bp 1 0.213158216067048 1 0.386548817157745 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM70 ENSG00000244295 ncRNA_exonic Human processed_pseudogene chr8:74894628 chr8:74894627 . . 0 20 hm5C_associated_SNPs_7957 1 0 0 0 0 Ribosome 1 0.500233064789283 1 0.999533870421434 hm5C_site_10579 DeepMRMD:1;iRNA_m5C:0.999533870421434 Mitochondrial Complex V (ATP Synthase) Deficiency, Nuclear Type Mitochondrial Complex V (ATP Synthase) Deficiency, Nuclear Type 10580 chr8 74894641 74894641 1 + G A rs66498650 74894626 + 74894606 74894646 41 ACAAGCGACTCATTGACTTGCGCAGTCCTCAGATAGTTAAG ACAAGCGACTCATTGACTTGCGCAGTCCTCAGATAATTAAG < 41bp 1 0.608372657431159 1 0.343596696853638 experiment 0.783254685137681 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM70 ENSG00000244295 ncRNA_exonic Human processed_pseudogene chr8:74894626 chr8:74894641 . . 0 36 hm5C_associated_SNPs_7958 1 0 0 0 0 Ribosome 1 0.500231749549984 1 0.999536500900032 hm5C_site_10580 DeepMRMD:1;iRNA_m5C:0.999536500900032 Mitochondrial Complex V (ATP Synthase) Deficiency, Nuclear Type Mitochondrial Complex V (ATP Synthase) Deficiency, Nuclear Type 10581 chr8 74894641 74894641 1 + G A rs66498650 74894628 + 74894608 74894648 41 AAGCGACTCATTGACTTGCGCAGTCCTCAGATAGTTAAGCA AAGCGACTCATTGACTTGCGCAGTCCTCAGATAATTAAGCA < 41bp 1 0.191750203033201 1 0.285202652215958 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM70 ENSG00000244295 ncRNA_exonic Human processed_pseudogene chr8:74894628 chr8:74894641 . . 0 34 hm5C_associated_SNPs_7959 1 0 0 0 0 Ribosome 1 0.500231643969954 1 0.999536712060093 hm5C_site_10581 DeepMRMD:1;iRNA_m5C:0.999536712060093 Mitochondrial Complex V (ATP Synthase) Deficiency, Nuclear Type Mitochondrial Complex V (ATP Synthase) Deficiency, Nuclear Type 10582 chr8 84316225 84316225 1 + C T rs35504602 84316233 + 84316213 84316253 41 TAACACTCACCGCGAGGGTCCACGGCTTCATTCTTGAAGTC TAACACTCACCGTGAGGGTCCACGGCTTCATTCTTGAAGTC < 41bp 1 0.461921706971027 1 0.116049140691757 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LINC01419 ENSG00000253898 ncRNA_exonic Human lincRNA chr8:84316233 chr8:84316225 . . 0 13 hm5C_associated_SNPs_7960 0 0 0 0 1 unknown 1 0.500231635811019 1 0.999536728377962 hm5C_site_10582 DeepMRMD:1;iRNA_m5C:0.999536728377962 10583 chr8 86038952 86038952 1 + G A rs114202224 86038944 + 86038924 86038964 41 TCCCTTGTTGAACAGCTAGACCAAGAGAGAGAGAAGAGATG TCCCTTGTTGAACAGCTAGACCAAGAGAAAGAGAAGAGATG < 41bp 1 0.194663092647545 1 0.224572211503983 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86038944 chr8:86038952 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_7961 0 0 0 0 1 exosome 1 0.500231693491195 1 0.999536613017609 hm5C_site_10583 DeepMRMD:1;iRNA_m5C:0.999536613017609 10584 chr8 87526724 87526724 1 + A C rs144996394 87526741 + 87526721 87526761 41 GCCAACCTGTTCTCCACCGTCGCTCGACTTCCACCTCTAAG GCCCACCTGTTCTCCACCGTCGCTCGACTTCCACCTCTAAG < 41bp 1 0.349451273283941 1 0.271183162927628 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE3 ENSG00000085719 UTR5 Human protein_coding chr8:87526741 chr8:87526724 . . 0 4 hm5C_associated_SNPs_7962 0 0 1 0 1 Nucleus 1 0.500231459033529 1 0.999537081932941 hm5C_site_10584 DeepMRMD:1;iRNA_m5C:0.999537081932941 10585 chr8 87572330 87572330 1 + G A rs533282151 87572331 + 87572311 87572351 41 GTGCTGTTAACTGGGGAAGGCATCTAACTAGTAGCCTGCTA GTGCTGTTAACTGGGGAAGACATCTAACTAGTAGCCTGCTA < 41bp 1 0.559779416351803 1 0.0848193168640137 experiment 0.880441167296393 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CPNE3 ENSG00000085719 UTR3 Human protein_coding chr8:87572331 chr8:87572330 . . 0 20 hm5C_associated_SNPs_7963 0 0 1 0 0 Nucleus 1 0.500231643707584 1 0.999536712584831 hm5C_site_10585 DeepMRMD:1;iRNA_m5C:0.999536712584831 10586 chr8 87572903 87572903 1 + A G rs150559243 87572900 + 87572880 87572920 41 CATAAGAACTGTGATTCCAGCAAACTAGGGTAATTGGTGCC CATAAGAACTGTGATTCCAGCAAGCTAGGGTAATTGGTGCC < 41bp 1 0.565941789048802 1 0.742050528526306 experiment 0.868116421902395 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE3 ENSG00000085719 UTR3 Human protein_coding chr8:87572900 chr8:87572903 . . 0 24 hm5C_associated_SNPs_7964 0 0 1 1 0 Nucleus 1 0.500231643921093 0.515898942947388 0.999536712157815 hm5C_site_10586 DeepMRMD:0.515898942947388;iRNA_m5C:0.999536712157815 10587 chr8 90914948 90914948 1 + G T rs147041364 90914944 + 90914924 90914964 41 CGACCCCGAGCCAGCGGGCGCCCCGAGCGGGCAGCCTCGCC CGACCCCGAGCCAGCGGGCGCCCCTAGCGGGCAGCCTCGCC < 41bp 1 0.676639169406153 1 0.0704542994499207 experiment 0.646721661187694 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OSGIN2 ENSG00000164823 UTR5 Human protein_coding chr8:90914944 chr8:90914948 . . 0 25 hm5C_associated_SNPs_7967 0 0 0 0 0 Cytosol 1 0.500231643833475 1 0.999536712333051 hm5C_site_10587 DeepMRMD:1;iRNA_m5C:0.999536712333051 10588 chr8 90914948 90914948 1 + G T rs147041364 90914945 + 90914925 90914965 41 GACCCCGAGCCAGCGGGCGCCCCGAGCGGGCAGCCTCGCCG GACCCCGAGCCAGCGGGCGCCCCTAGCGGGCAGCCTCGCCG < 41bp 1 0.673152387023833 1 0.197479367256165 experiment 0.653695225952334 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OSGIN2 ENSG00000164823 UTR5 Human protein_coding chr8:90914945 chr8:90914948 . . 0 24 hm5C_associated_SNPs_7968 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10588 DeepMRMD:1;iRNA_m5C:0.999536712157815 10589 chr8 90914948 90914948 1 + G T rs147041364 90914946 + 90914926 90914966 41 ACCCCGAGCCAGCGGGCGCCCCGAGCGGGCAGCCTCGCCGG ACCCCGAGCCAGCGGGCGCCCCTAGCGGGCAGCCTCGCCGG < 41bp 1 0.681563864339814 1 0.342276304960251 experiment 0.636872271320372 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OSGIN2 ENSG00000164823 UTR5 Human protein_coding chr8:90914946 chr8:90914948 . . 0 23 hm5C_associated_SNPs_7969 0 0 0 0 0 Cytosol 1 0.50023164134114 1 0.99953671731772 hm5C_site_10589 DeepMRMD:1;iRNA_m5C:0.99953671731772 10590 chr8 92090657 92090657 1 + C A rs143832637 92090658 + 92090638 92090678 41 ATTGAAAACTTAACAGGAGCCAGACATATGGAAAGTGAGAA ATTGAAAACTTAACAGGAGACAGACATATGGAAAGTGAGAA < 41bp 1 0.496625970360612 1 0.292937755584717 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92090658 chr8:92090657 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_7970 0 0 1 0 1 Ribosome 1 0.500231643921067 1 0.999536712157866 hm5C_site_10590 DeepMRMD:1;iRNA_m5C:0.999536712157866 10591 chr8 95804616 95804616 1 + C T rs181895243 95804620 + 95804600 95804640 41 GGAGTAGCTGGGATTACAGGCACCTGCCACCAAGCACGGCT GGAGTAGCTGGGATTATAGGCACCTGCCACCAAGCACGGCT < 41bp 1 0.621831978451911 1 0.55953586101532 experiment 0.756336043096178 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DPY19L4 ENSG00000254307 ncRNA_intronic Human antisense chr8:95804620 chr8:95804616 . . 0 17 hm5C_associated_SNPs_7972 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.88092827796936 0.999536712157815 hm5C_site_10591 DeepMRMD:0.88092827796936;iRNA_m5C:0.999536712157815 10592 chr8 96037287 96037287 1 + C A rs113557846 96037302 + 96037282 96037322 41 GGCATCCCCGGCCTGTGCTGCCGCCGGCCGCCTCTGGGTCT GGCATACCCGGCCTGTGCTGCCGCCGGCCGCCTCTGGGTCT < 41bp 1 0.299787684112711 1 0.263301193714142 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96037302 chr8:96037287 synonymous SNV . 0 6 hm5C_associated_SNPs_7973 1 0 1 0 0 chromatin 1 0.500231643926199 1 0.999536712147603 hm5C_site_10592 DeepMRMD:1;iRNA_m5C:0.999536712147603 not specified not specified 10593 chr8 97506103 97506103 1 + T A rs562234217 97506084 + 97506064 97506104 41 CGCGGATCGCGCGCTCCCGCCGCTCTGCCCCTAAACTTCTG CGCGGATCGCGCGCTCCCGCCGCTCTGCCCCTAAACTTCAG < 41bp 1 0.204367493691445 1 0.114405393600464 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDC2 ENSG00000169439 UTR5 Human protein_coding chr8:97506084 chr8:97506103 . . 0 40 hm5C_associated_SNPs_7974 0 0 1 0 0 Ribosome 1 0.500231657961898 1 0.999536684076203 hm5C_site_10593 DeepMRMD:1;iRNA_m5C:0.999536684076203 10594 chr8 97657582 97657582 1 + T G rs528850549 97657596 + 97657576 97657616 41 GCGAGCTTAGTCCTGGGAGCCGCCTCCGTCGCCGCCGTCAG GCGAGCGTAGTCCTGGGAGCCGCCTCCGTCGCCGCCGTCAG < 41bp 1 0.619548025976129 1 0.640456140041351 experiment 0.760903948047743 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPQ ENSG00000104324 UTR5 Human protein_coding chr8:97657596 chr8:97657582 . . 0 7 hm5C_associated_SNPs_7975 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645161813 0.719087719917298 0.999536709676374 hm5C_site_10594 DeepMRMD:0.719087719917298;iRNA_m5C:0.999536709676374 10595 chr8 98657020 98657020 1 + C A rs113646142 98657015 + 98656995 98657035 41 CAAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGCGGCCCCCG CAAGCGGGAGGAGGCGGCGGCCGTGACGGCCGCGGCCCCCG < 41bp 1 0.596527237941985 1 0.575117528438568 experiment 0.80694552411603 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657015 chr8:98657020 nonsynonymous SNV 0.039 1 26 hm5C_associated_SNPs_7976 0 0 1 0 1 Ribosome 1 0.500231643920677 0.849764943122864 0.999536712158645 hm5C_site_10595 DeepMRMD:0.849764943122864;iRNA_m5C:0.999536712158645 10596 chr8 98739296 98739296 1 + T C rs141156170 98739276 + 98739256 98739296 41 ATCGTGCCACTGCACTCCAGCCTGGGCAACAGAAGGAGACT ATCGTGCCACTGCACTCCAGCCTGGGCAACAGAAGGAGACC < 41bp 1 0.259735928357331 1 0.228431850671768 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTDH ENSG00000147649 UTR3 Human protein_coding chr8:98739276 chr8:98739296 . . 0 41 hm5C_associated_SNPs_7980 0 0 0 0 0 Ribosome 1 0.500231643920987 1 0.999536712158026 hm5C_site_10596 DeepMRMD:1;iRNA_m5C:0.999536712158026 10597 chr8 100182333 100182333 1 + G C rs140848350 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCACTTATTCCCTCTTTCAGC < 41bp 1 0.0509726506884614 1 0.0569774508476257 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182333 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_7982 3 0 1 0 2 Nucleus 1 0.500231644087285 1 0.999536711825431 hm5C_site_10597 DeepMRMD:1;iRNA_m5C:0.999536711825431 not specified not specified 10598 chr8 101165832 101165832 1 + T C rs148821867 101165850 + 101165830 101165870 41 TATGTGAATGTGGTTGGTCTCTCTTGCTTTCAAAATATCTT TACGTGAATGTGGTTGGTCTCTCTTGCTTTCAAAATATCTT < 41bp 1 0.349980927341397 1 0.0964289903640747 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLR2K ENSG00000147669 UTR3 Human protein_coding chr8:101165850 chr8:101165832 . . 0 3 hm5C_associated_SNPs_7983 0 0 1 4 0 Ribosome 1 0.500231643920162 1 0.999536712159676 hm5C_site_10598 DeepMRMD:1;iRNA_m5C:0.999536712159676 10599 chr8 102381113 102381113 1 + C T rs76180726 102381132 + 102381112 102381152 41 TCTTGATTCCACGTTCCCTCCACAAAATGCCTGGCGAAGCC TTTTGATTCCACGTTCCCTCCACAAAATGCCTGGCGAAGCC < 41bp 1 0.672364436112818 1 0.657117307186127 experiment 0.655271127774364 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NACAP1 ENSG00000228224 ncRNA_exonic Human transcribed_processed_pseudogene chr8:102381132 chr8:102381113 . . 0 2 hm5C_associated_SNPs_7984 0 0 0 0 1 unknown 1 0.500231643921092 0.685765385627746 0.999536712157815 hm5C_site_10599 DeepMRMD:0.685765385627746;iRNA_m5C:0.999536712157815 10600 chr8 104084091 104084091 1 + C T rs112544791 104084100 + 104084080 104084120 41 AGGGATCCTCCCGCCTCAGCCTCCCAAAGTGCTGGTGTTAC AGGGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGTGTTAC < 41bp 1 0.43122749673249 1 0.261339068412781 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6V1C1 ENSG00000155097 UTR3 Human protein_coding chr8:104084100 chr8:104084091 . . 0 12 hm5C_associated_SNPs_7986 0 0 1 0 0 Ribosome 1 0.500231664703543 1 0.999536670592915 hm5C_site_10600 DeepMRMD:1;iRNA_m5C:0.999536670592915 10601 chr8 104432659 104432659 1 + G A rs143025416 104432667 + 104432647 104432687 41 CCAGAGAAGCTGGCTACTGTCCTTTCTGGGGCGTGTGATGG CCAGAGAAGCTGACTACTGTCCTTTCTGGGGCGTGTGATGG < 41bp 1 0.0747703881128989 1 0.0504245162010193 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104432667 chr8:104432659 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_7988 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_10601 DeepMRMD:1;iRNA_m5C:0.999536712157815 10602 chr8 104432670 104432670 1 + T C rs146162905 104432667 + 104432647 104432687 41 CCAGAGAAGCTGGCTACTGTCCTTTCTGGGGCGTGTGATGG CCAGAGAAGCTGGCTACTGTCCTCTCTGGGGCGTGTGATGG < 41bp 1 0.217869105911276 1 0.200789421796799 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104432667 chr8:104432670 synonymous SNV . 0 24 hm5C_associated_SNPs_7989 0 0 1 0 0 Nucleus 1 0.50023164392112 1 0.999536712157761 hm5C_site_10602 DeepMRMD:1;iRNA_m5C:0.999536712157761 10603 chr8 104432679 104432679 1 + G A rs140817247 104432667 + 104432647 104432687 41 CCAGAGAAGCTGGCTACTGTCCTTTCTGGGGCGTGTGATGG CCAGAGAAGCTGGCTACTGTCCTTTCTGGGGCATGTGATGG < 41bp 1 0.0991056657652332 1 0.0509164035320282 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104432667 chr8:104432679 synonymous SNV . 0 33 hm5C_associated_SNPs_7990 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_10603 DeepMRMD:1;iRNA_m5C:0.999536712157815 10604 chr8 104438333 104438333 1 + A G rs185916745 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCAGGCTGTGGAGACGAGGAAGAGCC < 41bp 1 0.652012243873526 1 0.488642185926437 experiment 0.695975512252949 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438333 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_7991 0 0 1 0 2 Nucleus 1 0.500231029338801 1 0.999537941322399 hm5C_site_10604 DeepMRMD:1;iRNA_m5C:0.999537941322399 10605 chr8 104438340 104438340 1 + C T rs113982117 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCAGGCTATGGAGATGAGGAAGAGCC < 41bp 1 0.463149632880263 1 0.274929493665695 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438340 synonymous SNV . 0 30 hm5C_associated_SNPs_7992 0 0 1 0 2 Nucleus 1 0.500231642694009 1 0.999536714611983 hm5C_site_10605 DeepMRMD:1;iRNA_m5C:0.999536714611983 10606 chr8 104438346 104438346 1 + A G rs367722339 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAGGAGCC < 41bp 1 0.53236861467128 1 0.339720249176025 experiment 0.93526277065744 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438346 synonymous SNV . 0 36 hm5C_associated_SNPs_7993 0 0 1 0 2 Nucleus 1 0.500231643922133 1 0.999536712155735 hm5C_site_10606 DeepMRMD:1;iRNA_m5C:0.999536712155735 10607 chr8 107754473 107754473 1 + G A rs1681904 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGCGTTAGCATCTGAACCACTGAAAGTGAGTGATGGC < 41bp 1 0.0768543113175255 1 0.0341335237026215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754473 synonymous SNV . 0 20 hm5C_associated_SNPs_7995 0 0 0 1 2 chromatin 1 0.500228300409346 1 0.999543399181308 hm5C_site_10607 DeepMRMD:1;iRNA_m5C:0.999543399181308 10608 chr8 107754473 107754473 1 + G A rs1681904 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGCGTTAGCATCTGAACCACTGAAAGTGAGTGATGGCT < 41bp 1 0.184446076882453 1 0.101689368486404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754473 synonymous SNV . 0 19 hm5C_associated_SNPs_7996 0 0 0 1 2 chromatin 1 0.500232098318622 1 0.999535803362755 hm5C_site_10608 DeepMRMD:1;iRNA_m5C:0.999535803362755 10609 chr8 121259922 121259922 1 + C T rs61738288 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGATCCCCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.0680273362390912 1 0.0496649146080017 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259922 synonymous SNV . 0 13 hm5C_associated_SNPs_7998 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10609 DeepMRMD:1;iRNA_m5C:0.999536712157815 10610 chr8 121259922 121259922 1 + C T rs61738288 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGATCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.400341047540479 1 0.189350813627243 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259922 synonymous SNV . 0 9 hm5C_associated_SNPs_7999 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10610 DeepMRMD:1;iRNA_m5C:0.999536712157815 10611 chr8 121259936 121259936 1 + C A rs2305606 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCCATCTTCCCAGGTGAAAGGCTATA < 41bp 1 0.0806334403294268 1 0.150198340415955 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259936 nonsynonymous SNV 0.010 3 27 hm5C_associated_SNPs_8000 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10611 DeepMRMD:1;iRNA_m5C:0.999536712157815 10612 chr8 121259936 121259936 1 + C A rs2305606 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTCCCAGGTGAAAGGCTATAGAAT < 41bp 1 0.318496264261684 1 0.325822293758392 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259936 nonsynonymous SNV 0.010 3 23 hm5C_associated_SNPs_8001 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10612 DeepMRMD:1;iRNA_m5C:0.999536712157815 10613 chr8 124219915 124219915 1 + C T rs74938406 124219901 + 124219881 124219921 41 CTGACTCCAACCTGGAGGCCCTTCCTGCAGGCCTCCCCTCA CTGACTCCAACCTGGAGGCCCTTCCTGCAGGCCTTCCCTCA < 41bp 1 0.134426574104861 1 0.026922881603241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM83A ENSG00000147689 CDS Human protein_coding chr8:124219901 chr8:124219915 nonsynonymous SNV 0.606 1 35 hm5C_associated_SNPs_8003 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10613 DeepMRMD:1;iRNA_m5C:0.999536712157815 10614 chr8 124220450 124220450 1 + T C rs138198901 124220443 + 124220423 124220463 41 TCGGGAGAGTTGGGGAAACTCCTCCTCTTAGGAAAGGCTAA TCGGGAGAGTTGGGGAAACTCCTCCTCCTAGGAAAGGCTAA < 41bp 1 0.117398043022864 1 0.358798444271088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM83A ENSG00000147689 UTR3 Human protein_coding chr8:124220443 chr8:124220450 . . 0 28 hm5C_associated_SNPs_8004 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10614 DeepMRMD:1;iRNA_m5C:0.999536712157815 10615 chr8 124220700 124220700 1 + G A rs115042207 124220703 + 124220683 124220723 41 GGAGCTTGAGTTGTCAGGGGCCAGGACTGGCCCCACTGCAG GGAGCTTGAGTTGTCAGAGGCCAGGACTGGCCCCACTGCAG < 41bp 1 0.569146264547596 1 0.76548308134079 experiment 0.861707470904808 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM83A ENSG00000147689 UTR3 Human protein_coding chr8:124220703 chr8:124220700 . . 0 18 hm5C_associated_SNPs_8005 0 0 1 0 0 Cytosol 1 0.500231643767576 0.46903383731842 0.999536712464848 hm5C_site_10615 DeepMRMD:0.46903383731842;iRNA_m5C:0.999536712464848 10616 chr8 124220700 124220700 1 + G A rs115042207 124220713 + 124220693 124220733 41 TTGTCAGGGGCCAGGACTGGCCCCACTGCAGTGCCCAGGCC TTGTCAGAGGCCAGGACTGGCCCCACTGCAGTGCCCAGGCC < 41bp 1 0.638993914206681 1 0.404255151748657 experiment 0.722012171586639 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM83A ENSG00000147689 UTR3 Human protein_coding chr8:124220713 chr8:124220700 . . 0 8 hm5C_associated_SNPs_8006 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10616 DeepMRMD:1;iRNA_m5C:0.999536712157815 10617 chr8 124220700 124220700 1 + G A rs115042207 124220714 + 124220694 124220734 41 TGTCAGGGGCCAGGACTGGCCCCACTGCAGTGCCCAGGCCA TGTCAGAGGCCAGGACTGGCCCCACTGCAGTGCCCAGGCCA < 41bp 1 0.26234239762836 1 0.295573353767395 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM83A ENSG00000147689 UTR3 Human protein_coding chr8:124220714 chr8:124220700 . . 0 7 hm5C_associated_SNPs_8007 0 0 1 0 0 Cytosol 1 0.500231643788239 1 0.999536712423521 hm5C_site_10617 DeepMRMD:1;iRNA_m5C:0.999536712423521 10618 chr8 124220700 124220700 1 + G A rs115042207 124220715 + 124220695 124220735 41 GTCAGGGGCCAGGACTGGCCCCACTGCAGTGCCCAGGCCAG GTCAGAGGCCAGGACTGGCCCCACTGCAGTGCCCAGGCCAG < 41bp 1 0.29800366590292 1 0.122844874858856 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM83A ENSG00000147689 UTR3 Human protein_coding chr8:124220715 chr8:124220700 . . 0 6 hm5C_associated_SNPs_8008 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10618 DeepMRMD:1;iRNA_m5C:0.999536712157815 10619 chr8 124220700 124220700 1 + G A rs115042207 124220716 + 124220696 124220736 41 TCAGGGGCCAGGACTGGCCCCACTGCAGTGCCCAGGCCAGT TCAGAGGCCAGGACTGGCCCCACTGCAGTGCCCAGGCCAGT < 41bp 1 0.336748654261849 1 0.181844174861908 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM83A ENSG00000147689 UTR3 Human protein_coding chr8:124220716 chr8:124220700 . . 0 5 hm5C_associated_SNPs_8009 0 0 1 0 0 Cytosol 1 0.500231643921067 1 0.999536712157866 hm5C_site_10619 DeepMRMD:1;iRNA_m5C:0.999536712157866 10620 chr8 125551364 125551364 1 + A G rs34681068 125551367 + 125551347 125551387 41 TCCGGCTGGCCCCGCTCAGTCACCCGCAGCAGGCGTGCAGT TCCGGCTGGCCCCGCTCGGTCACCCGCAGCAGGCGTGCAGT < 41bp 1 0.639652869893524 1 0.179532408714294 experiment 0.720694260212952 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFB9 ENSG00000147684;ENSG00000147687 UTR5 Human other chr8:125551367 chr8:125551364 . . 0 18 hm5C_associated_SNPs_8010 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_10620 DeepMRMD:1;iRNA_m5C:0.999536712157816 10621 chr8 125551365 125551365 1 + G A rs186855962 125551384 + 125551364 125551404 41 AGTCACCCGCAGCAGGCGTGCAGTTTCCCGGCTCTCCGCGC AATCACCCGCAGCAGGCGTGCAGTTTCCCGGCTCTCCGCGC < 41bp 1 0.676925522864606 1 0.32960906624794 experiment 0.646148954270787 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDUFB9 ENSG00000147684;ENSG00000147687 UTR5 Human other chr8:125551384 chr8:125551365 . . 0 2 hm5C_associated_SNPs_8013 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10621 DeepMRMD:1;iRNA_m5C:0.999536712157815 10622 chr8 125551377 125551377 1 + A C rs371001929 125551367 + 125551347 125551387 41 TCCGGCTGGCCCCGCTCAGTCACCCGCAGCAGGCGTGCAGT TCCGGCTGGCCCCGCTCAGTCACCCGCAGCCGGCGTGCAGT < 41bp 1 0.680451874689437 1 0.488457977771759 experiment 0.639096250621126 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFB9 ENSG00000147684;ENSG00000147687 UTR5 Human other chr8:125551367 chr8:125551377 . . 0 31 hm5C_associated_SNPs_8014 0 0 1 0 0 Ribosome 1 0.500231643921033 1 0.999536712157933 hm5C_site_10622 DeepMRMD:1;iRNA_m5C:0.999536712157933 10623 chr8 125562155 125562155 1 + C T rs377342524 125562146 + 125562126 125562166 41 CCATGTAGAAAGAGAGAGACCTCATCTTTCATGCTTGCAAG CCATGTAGAAAGAGAGAGACCTCATCTTTTATGCTTGCAAG < 41bp 1 0.252241929011251 1 0.498351275920868 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFB9 ENSG00000147684 UTR3 Human protein_coding chr8:125562146 chr8:125562155 . . 0 30 hm5C_associated_SNPs_8019 0 0 1 0 0 Ribosome 1 0.500231643921099 1 0.999536712157801 hm5C_site_10623 DeepMRMD:1;iRNA_m5C:0.999536712157801 10624 chr8 126021414 126021414 1 + A T rs118130263 126021423 + 126021403 126021443 41 ATTTGTTTTAGAATGCACCACAGTTTAAAGCAAATCATGCT ATTTGTTTTAGTATGCACCACAGTTTAAAGCAAATCATGCT < 41bp 1 0.0661537425324856 1 0.295370638370514 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SQLE ENSG00000104549 CDS Human protein_coding chr8:126021423 chr8:126021414 nonsynonymous SNV 0.995 4 12 hm5C_associated_SNPs_8020 0 0 1 0 1 Nucleus 1 0.500231660097193 1 0.999536679805614 hm5C_site_10624 DeepMRMD:1;iRNA_m5C:0.999536679805614 10625 chr8 126442674 126442674 1 + G A rs187451972 126442689 + 126442669 126442709 41 GCTCAGGATCCCGAGCGCCGCGAAAAAGTTCCCCCGGCTTT GCTCAAGATCCCGAGCGCCGCGAAAAAGTTCCCCCGGCTTT < 41bp 1 0.633255858163071 1 0.732907831668854 experiment 0.733488283673858 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIB1 ENSG00000173334 UTR5 Human protein_coding chr8:126442689 chr8:126442674 . . 0 6 hm5C_associated_SNPs_8021 0 0 1 0 0 Cytosol 1 0.500231643921091 0.534184336662292 0.999536712157817 hm5C_site_10625 DeepMRMD:0.534184336662292;iRNA_m5C:0.999536712157817 10626 chr8 128750757 128750757 1 + G C rs140182565 128750748 + 128750728 128750768 41 TACGTTGCGGTCACACCCTTCTCCCTTCGGGGAGACAACGA TACGTTGCGGTCACACCCTTCTCCCTTCGCGGAGACAACGA < 41bp 1 0.548345309866407 1 0.719464182853699 experiment 0.903309380267185 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYC ENSG00000136997 CDS Human protein_coding chr8:128750748 chr8:128750757 synonymous SNV . 0 30 hm5C_associated_SNPs_8022 0 0 1 0 0 Cytosol 1 0.500231643921224 0.561071634292602 0.999536712157552 hm5C_site_10626 DeepMRMD:0.561071634292602;iRNA_m5C:0.999536712157552 10627 chr8 128753248 128753248 1 + G A rs35524866 128753255 + 128753235 128753275 41 AGAAATGTCCTGAGCAATCACCTATGAACTTGTTTCAAATG AGAAATGTCCTGAACAATCACCTATGAACTTGTTTCAAATG < 41bp 1 0.0839252879301013 1 0.0554847121238708 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYC ENSG00000136997 UTR3 Human protein_coding chr8:128753255 chr8:128753248 . . 0 14 hm5C_associated_SNPs_8024 0 0 1 0 0 Cytosol 1 0.50023163600683 1 0.999536727986341 hm5C_site_10627 DeepMRMD:1;iRNA_m5C:0.999536727986341 10628 chr8 128753248 128753248 1 + G A rs35524866 128753256 + 128753236 128753276 41 GAAATGTCCTGAGCAATCACCTATGAACTTGTTTCAAATGC GAAATGTCCTGAACAATCACCTATGAACTTGTTTCAAATGC < 41bp 1 0.233142908008361 1 0.172530502080917 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYC ENSG00000136997 UTR3 Human protein_coding chr8:128753256 chr8:128753248 . . 0 13 hm5C_associated_SNPs_8025 0 0 1 0 0 Cytosol 1 0.500231643972828 1 0.999536712054344 hm5C_site_10628 DeepMRMD:1;iRNA_m5C:0.999536712054344 10629 chr8 128753254 128753254 1 + A G rs2070583 128753255 + 128753235 128753275 41 AGAAATGTCCTGAGCAATCACCTATGAACTTGTTTCAAATG AGAAATGTCCTGAGCAATCGCCTATGAACTTGTTTCAAATG < 41bp 1 0.0897992795986863 1 0.144785404205322 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYC ENSG00000136997 UTR3 Human protein_coding chr8:128753255 chr8:128753254 . . 0 20 hm5C_associated_SNPs_8027 0 0 1 0 0 Cytosol 1 0.500231224458525 1 0.999537551082951 hm5C_site_10629 DeepMRMD:1;iRNA_m5C:0.999537551082951 10630 chr8 128753254 128753254 1 + A G rs2070583 128753256 + 128753236 128753276 41 GAAATGTCCTGAGCAATCACCTATGAACTTGTTTCAAATGC GAAATGTCCTGAGCAATCGCCTATGAACTTGTTTCAAATGC < 41bp 1 0.225392667499099 1 0.233053624629974 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYC ENSG00000136997 UTR3 Human protein_coding chr8:128753256 chr8:128753254 . . 0 19 hm5C_associated_SNPs_8028 0 0 1 0 0 Cytosol 1 0.500231640421302 1 0.999536719157397 hm5C_site_10630 DeepMRMD:1;iRNA_m5C:0.999536719157397 10631 chr8 129108823 129108823 1 + C T rs11604 129108803 + 129108783 129108823 41 CCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAAC CCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAAT < 41bp 1 0.663478073423269 1 0.618604183197021 experiment 0.673043853153461 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PVT1 ENSG00000249859 ncRNA_exonic Human lincRNA chr8:129108803 chr8:129108823 . . 0 41 hm5C_associated_SNPs_8029 0 0 1 0 2 nucleoplasm 1 0.500231643921092 0.762791633605958 0.999536712157815 hm5C_site_10631 DeepMRMD:0.762791633605958;iRNA_m5C:0.999536712157815 10632 chr8 142178430 142178430 1 + C T rs201427766 142178447 + 142178427 142178467 41 AGGCGCCGGAGCTGATGAGGCTCATCAGCGAGATCCTGGAC AGGTGCCGGAGCTGATGAGGCTCATCAGCGAGATCCTGGAC < 41bp 1 0.407666459503758 1 0.192429482936859 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142178447 chr8:142178430 nonsynonymous SNV 0.001 0 4 hm5C_associated_SNPs_8030 0 0 0 0 0 Nucleus 1 0.500235175787934 1 0.999529648424131 hm5C_site_10632 DeepMRMD:1;iRNA_m5C:0.999529648424131 10633 chr8 144103730 144103730 1 + G C rs541280024 144103712 + 144103692 144103732 41 GCCTTTGGGGGTTGGGGTTTCTGCCACTTCCGGGTCTAGGC GCCTTTGGGGGTTGGGGTTTCTGCCACTTCCGGGTCTACGC < 41bp 1 0.686703008677623 1 0.225469648838043 experiment 0.626593982644753 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LY6E ENSG00000160932 UTR3 Human protein_coding chr8:144103712 chr8:144103730 . . 0 39 hm5C_associated_SNPs_8032 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10633 DeepMRMD:1;iRNA_m5C:0.999536712157815 10634 chr8 144343338 144343338 1 + G A rs138162814 144343330 + 144343310 144343350 41 CCTGTTGGCTGTGGTGGGGTCCACCTGCGTTTCTGGGGAGC CCTGTTGGCTGTGGTGGGGTCCACCTGCATTTCTGGGGAGC < 41bp 1 0.107596398807378 1 0.164260387420654 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZFP41 ENSG00000181638 UTR3 Human protein_coding chr8:144343330 chr8:144343338 . . 0 29 hm5C_associated_SNPs_8033 0 0 1 0 0 chromatin 1 0.500231643921108 1 0.999536712157785 hm5C_site_10634 DeepMRMD:1;iRNA_m5C:0.999536712157785 10635 chr8 144640506 144640506 1 + G C rs80346174 144640523 + 144640503 144640543 41 CCTGCGTCAGGTTGCAGTTTCACTTTTAGCTCTGGGCACCT CCTCCGTCAGGTTGCAGTTTCACTTTTAGCTCTGGGCACCT < 41bp 1 0.218550103640037 1 0.0207050144672394 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSDMD ENSG00000104518 UTR5 Human protein_coding chr8:144640523 chr8:144640506 . . 0 4 hm5C_associated_SNPs_8035 0 0 0 0 0 Ribosome 1 0.500231644130753 1 0.999536711738493 hm5C_site_10635 DeepMRMD:1;iRNA_m5C:0.999536711738493 10636 chr8 145065682 145065682 1 + G A rs201456230 145065698 + 145065678 145065718 41 AAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTC AAGGAGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTC < 41bp 1 0.191467219764488 1 0.063848465681076 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065698 chr8:145065682 synonymous SNV . 0 5 hm5C_associated_SNPs_8036 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10636 DeepMRMD:1;iRNA_m5C:0.999536712157815 10637 chr8 145065682 145065682 1 + G A rs201456230 145065699 + 145065679 145065719 41 AGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCC AGGAGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCC < 41bp 1 0.165657520602746 1 0.0994962155818939 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065699 chr8:145065682 synonymous SNV . 0 4 hm5C_associated_SNPs_8037 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10637 DeepMRMD:1;iRNA_m5C:0.999536712157815 10638 chr8 145137545 145137545 1 + G A rs538541613 145137536 + 145137516 145137556 41 TCTGGGACCGGAAGTGCGGGCGAGCGCGGGTCCCCGGGTCT TCTGGGACCGGAAGTGCGGGCGAGCGCGGATCCCCGGGTCT < 41bp 1 0.58717232722484 1 0.766103684902191 experiment 0.825655345550319 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPAA1 ENSG00000197858 UTR5 Human protein_coding chr8:145137536 chr8:145137545 . . 0 30 hm5C_associated_SNPs_8039 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164427922 0.467792630195618 0.999536711441561 hm5C_site_10638 DeepMRMD:0.467792630195618;iRNA_m5C:0.999536711441561 10639 chr8 145139727 145139727 1 + C T rs4977165 145139712 + 145139692 145139732 41 TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCT TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATTGGCCT < 41bp 1 0.229723345948867 1 0.118714451789856 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139712 chr8:145139727 synonymous SNV . 0 36 hm5C_associated_SNPs_8040 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10639 DeepMRMD:1;iRNA_m5C:0.999536712157815 10640 chr8 145150832 145150832 1 + A G rs7820984 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGCAGGGGGTGCGGGGCTGGCCGTGGCTCTGCATTCGGCTG < 41bp 1 0.679085643476658 1 0.453360199928284 experiment 0.641828713046684 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150832 nonsynonymous SNV 0.084 0 23 hm5C_associated_SNPs_8041 0 0 1 0 1 Ribosome 1 0.500231643920914 1 0.999536712158173 hm5C_site_10640 DeepMRMD:1;iRNA_m5C:0.999536712158173 10641 chr8 145166333 145166333 1 + G A rs377288212 145166334 + 145166314 145166354 41 TGTCCCTGTTTGCAGCGAGGCCTTGTCTCTCATCCATCGTC TGTCCCTGTTTGCAGCGAGACCTTGTCTCTCATCCATCGTC < 41bp 1 0.0253075570954485 1 0.018972635269165 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166334 chr8:145166333 nonsynonymous SNV 0.001 0 20 hm5C_associated_SNPs_8044 0 0 0 0 0 chromatin 1 0.50023164391125 1 0.9995367121775 hm5C_site_10641 DeepMRMD:1;iRNA_m5C:0.9995367121775 10642 chr8 145166333 145166333 1 + G A rs377288212 145166335 + 145166315 145166355 41 GTCCCTGTTTGCAGCGAGGCCTTGTCTCTCATCCATCGTCG GTCCCTGTTTGCAGCGAGACCTTGTCTCTCATCCATCGTCG < 41bp 1 0.23396749806235 1 0.0297732651233673 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166335 chr8:145166333 nonsynonymous SNV 0.001 0 19 hm5C_associated_SNPs_8045 0 0 0 0 0 chromatin 1 0.500231643994092 1 0.999536712011815 hm5C_site_10642 DeepMRMD:1;iRNA_m5C:0.999536712011815 10643 chr8 145166334 145166334 1 + C A rs143098563 145166335 + 145166315 145166355 41 GTCCCTGTTTGCAGCGAGGCCTTGTCTCTCATCCATCGTCG GTCCCTGTTTGCAGCGAGGACTTGTCTCTCATCCATCGTCG < 41bp 1 0.194455738473072 1 0.0434945821762085 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166335 chr8:145166334 nonsynonymous SNV 0.002 0 20 hm5C_associated_SNPs_8046 0 0 0 0 0 chromatin 1 0.50023164392142 1 0.99953671215716 hm5C_site_10643 DeepMRMD:1;iRNA_m5C:0.99953671215716 10644 chr8 145166868 145166868 1 + G A rs551878508 145166884 + 145166864 145166904 41 GTGTGCTGTACCCCAAGCTGCCCACTGTCTTGCCCGGGCTG GTGTACTGTACCCCAAGCTGCCCACTGTCTTGCCCGGGCTG < 41bp 1 0.0354022752484356 1 0.125394582748413 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166884 chr8:145166868 nonsynonymous SNV 0.000 0 5 hm5C_associated_SNPs_8047 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_10644 DeepMRMD:1;iRNA_m5C:0.999536712157815 10645 chr8 145166868 145166868 1 + G A rs551878508 145166885 + 145166865 145166905 41 TGTGCTGTACCCCAAGCTGCCCACTGTCTTGCCCGGGCTGA TGTACTGTACCCCAAGCTGCCCACTGTCTTGCCCGGGCTGA < 41bp 1 0.0891287478515127 1 0.324834525585175 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166885 chr8:145166868 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_8048 0 0 0 0 1 chromatin 1 0.500231643925052 1 0.999536712149895 hm5C_site_10645 DeepMRMD:1;iRNA_m5C:0.999536712149895 10646 chr8 145166868 145166868 1 + G A rs551878508 145166886 + 145166866 145166906 41 GTGCTGTACCCCAAGCTGCCCACTGTCTTGCCCGGGCTGAG GTACTGTACCCCAAGCTGCCCACTGTCTTGCCCGGGCTGAG < 41bp 1 0.134381802982868 1 0.331766545772552 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166886 chr8:145166868 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_8049 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_10646 DeepMRMD:1;iRNA_m5C:0.999536712157815 10647 chr8 145167136 145167136 1 + C T rs556046484 145167151 + 145167131 145167171 41 TGGCCCGCTCCTCACTGAGCCACTACCTGGGCATCAGTCTG TGGCCTGCTCCTCACTGAGCCACTACCTGGGCATCAGTCTG < 41bp 1 0.151440191138065 1 0.142856597900391 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145167151 chr8:145167136 nonsynonymous SNV 0.001 1 6 hm5C_associated_SNPs_8050 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_10647 DeepMRMD:1;iRNA_m5C:0.999536712157815 10648 chr8 145167137 145167137 1 + G A rs181448990 145167151 + 145167131 145167171 41 TGGCCCGCTCCTCACTGAGCCACTACCTGGGCATCAGTCTG TGGCCCACTCCTCACTGAGCCACTACCTGGGCATCAGTCTG < 41bp 1 0.16266418178939 1 0.133550763130188 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145167151 chr8:145167137 nonsynonymous SNV 0.001 1 7 hm5C_associated_SNPs_8051 0 0 0 0 1 chromatin 1 0.500231643921483 1 0.999536712157033 hm5C_site_10648 DeepMRMD:1;iRNA_m5C:0.999536712157033 10649 chr8 145167157 145167157 1 + C A rs141421747 145167151 + 145167131 145167171 41 TGGCCCGCTCCTCACTGAGCCACTACCTGGGCATCAGTCTG TGGCCCGCTCCTCACTGAGCCACTACATGGGCATCAGTCTG < 41bp 1 0.167876747661956 1 0.281804502010345 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145167151 chr8:145167157 nonsynonymous SNV 0.004 1 27 hm5C_associated_SNPs_8052 0 0 0 0 1 chromatin 1 0.500231643921094 1 0.999536712157812 hm5C_site_10649 DeepMRMD:1;iRNA_m5C:0.999536712157812 10650 chr8 145168355 145168355 1 + C G rs148226166 145168356 + 145168336 145168376 41 CCTCCAGCACTGCCTGAGGCCCATCTGCTTCCCCGGCTATG CCTCCAGCACTGCCTGAGGGCCATCTGCTTCCCCGGCTATG < 41bp 1 0.0185435934961419 1 0.027763307094574 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145168356 chr8:145168355 nonsynonymous SNV 0.001 1 20 hm5C_associated_SNPs_8054 0 0 0 0 2 chromatin 1 0.500231643825219 1 0.999536712349561 hm5C_site_10650 DeepMRMD:1;iRNA_m5C:0.999536712349561 10651 chr8 145169204 145169204 1 + C T rs528202886 145169220 + 145169200 145169240 41 CGATCGAGGGCCTGGCCTCGCTGTTGGTGGCCCTGCTGGAG CGATTGAGGGCCTGGCCTCGCTGTTGGTGGCCCTGCTGGAG < 41bp 1 0.349309983946535 1 0.413247495889664 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145169220 chr8:145169204 synonymous SNV . 0 5 hm5C_associated_SNPs_8056 0 0 1 0 1 chromatin 1 0.500231643920944 1 0.999536712158111 hm5C_site_10651 DeepMRMD:1;iRNA_m5C:0.999536712158111 10652 chr8 145582248 145582248 1 + G A rs144713518 145582262 + 145582242 145582282 41 TGCCGGGGGCGGGCCCGGAACCGCCACGGGTGAGTCGGGTC TGCCGGAGGCGGGCCCGGAACCGCCACGGGTGAGTCGGGTC < 41bp 1 0.304776924504479 1 0.523211538791656 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC52A2 ENSG00000185803 UTR5 Human protein_coding chr8:145582262 chr8:145582248 . . 0 7 hm5C_associated_SNPs_8057 0 0 0 0 2 Ribosome 1 0.500231643921092 0.953576922416688 0.999536712157815 hm5C_site_10652 DeepMRMD:0.953576922416688;iRNA_m5C:0.999536712157815 10653 chr8 145582282 145582282 1 + C T rs187464121 145582262 + 145582242 145582282 41 TGCCGGGGGCGGGCCCGGAACCGCCACGGGTGAGTCGGGTC TGCCGGGGGCGGGCCCGGAACCGCCACGGGTGAGTCGGGTT < 41bp 1 0.246984108633858 1 0.45672932267189 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC52A2 ENSG00000185803 UTR5 Human protein_coding chr8:145582262 chr8:145582282 . . 0 41 hm5C_associated_SNPs_8058 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10653 DeepMRMD:1;iRNA_m5C:0.999536712157815 10654 chr8 145583795 145583795 1 + C T rs147954962 145583775 + 145583755 145583795 41 TGCCCTTCTGGTCGCTTCAGCTGCTGCCTTCCAGGGTCTTC TGCCCTTCTGGTCGCTTCAGCTGCTGCCTTCCAGGGTCTTT < 41bp 1 0.300405006328744 1 0.0677160024642944 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145583775 chr8:145583795 synonymous SNV . 0 41 hm5C_associated_SNPs_8059 1 0 1 0 0 Ribosome 1 0.500231554272341 1 0.999536891455318 hm5C_site_10654 DeepMRMD:1;iRNA_m5C:0.999536891455318 not specified not specified 10655 chr8 145660565 145660565 1 + G A rs149407728 145660553 - 145660533 145660573 41 CAGCGCCTCTGTCCCTGCAGCAGTGACACCCACTCTGTGGC CAGCGCCTTTGTCCCTGCAGCAGTGACACCCACTCTGTGGC < 41bp 1 0.214898824789873 1 0.714700222015381 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TONSL-AS1 ENSG00000160949 intronic Human protein_coding chr8:145660553 chr8:145660565 . . 0 9 hm5C_associated_SNPs_8060 0 0 1 0 0 unknown 1 0.500231643585372 0.570599555969238 0.999536712829256 hm5C_site_10655 DeepMRMD:0.570599555969238;iRNA_m5C:0.999536712829256 10656 chr8 145691802 145691802 1 + C T rs201514776 145691788 + 145691768 145691808 41 GCGCGAAGCGGGGCCCTCTGCCGCCCCGCGCTCCCATGTAC GCGCGAAGCGGGGCCCTCTGCCGCCCCGCGCTCCTATGTAC < 41bp 1 0.482662070833662 1 0.184433162212372 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIFC2 ENSG00000167702 UTR5 Human protein_coding chr8:145691788 chr8:145691802 . . 0 35 hm5C_associated_SNPs_8061 0 0 1 0 1 nucleolus 1 0.500231644577902 1 0.999536710844196 hm5C_site_10656 DeepMRMD:1;iRNA_m5C:0.999536710844196 10657 chr8 145691802 145691802 1 + C T rs201514776 145691789 + 145691769 145691809 41 CGCGAAGCGGGGCCCTCTGCCGCCCCGCGCTCCCATGTACG CGCGAAGCGGGGCCCTCTGCCGCCCCGCGCTCCTATGTACG < 41bp 1 0.339267232796768 1 0.425486594438553 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIFC2 ENSG00000167702 UTR5 Human protein_coding chr8:145691789 chr8:145691802 . . 0 34 hm5C_associated_SNPs_8062 0 0 1 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10657 DeepMRMD:1;iRNA_m5C:0.999536712157815 10658 chr8 145691802 145691802 1 + C T rs201514776 145691791 + 145691771 145691811 41 CGAAGCGGGGCCCTCTGCCGCCCCGCGCTCCCATGTACGCC CGAAGCGGGGCCCTCTGCCGCCCCGCGCTCCTATGTACGCC < 41bp 1 0.398465215797559 1 0.393499463796616 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIFC2 ENSG00000167702 UTR5 Human protein_coding chr8:145691791 chr8:145691802 . . 0 32 hm5C_associated_SNPs_8063 0 0 1 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10658 DeepMRMD:1;iRNA_m5C:0.999536712157815 10659 chr8 145691802 145691802 1 + C T rs201514776 145691792 + 145691772 145691812 41 GAAGCGGGGCCCTCTGCCGCCCCGCGCTCCCATGTACGCCT GAAGCGGGGCCCTCTGCCGCCCCGCGCTCCTATGTACGCCT < 41bp 1 0.330710955386882 1 0.563832461833954 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIFC2 ENSG00000167702 UTR5 Human protein_coding chr8:145691792 chr8:145691802 . . 0 31 hm5C_associated_SNPs_8064 0 0 1 0 1 nucleolus 1 0.500231643920984 0.872335076332092 0.999536712158033 hm5C_site_10659 DeepMRMD:0.872335076332092;iRNA_m5C:0.999536712158033 10660 chr8 145691802 145691802 1 + C T rs201514776 145691793 + 145691773 145691813 41 AAGCGGGGCCCTCTGCCGCCCCGCGCTCCCATGTACGCCTT AAGCGGGGCCCTCTGCCGCCCCGCGCTCCTATGTACGCCTT < 41bp 1 0.508222874117319 1 0.253276288509369 experiment 0.983554251765362 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIFC2 ENSG00000167702 UTR5 Human protein_coding chr8:145691793 chr8:145691802 . . 0 30 hm5C_associated_SNPs_8065 0 0 1 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10660 DeepMRMD:1;iRNA_m5C:0.999536712157815 10661 chr8 145691802 145691802 1 + C T rs201514776 145691794 + 145691774 145691814 41 AGCGGGGCCCTCTGCCGCCCCGCGCTCCCATGTACGCCTTT AGCGGGGCCCTCTGCCGCCCCGCGCTCCTATGTACGCCTTT < 41bp 1 0.4790971551485 1 0.420938014984131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIFC2 ENSG00000167702 UTR5 Human protein_coding chr8:145691794 chr8:145691802 . . 0 29 hm5C_associated_SNPs_8066 0 0 1 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10661 DeepMRMD:1;iRNA_m5C:0.999536712157815 10662 chr8 145698758 145698758 1 + G A rs201074786 145698760 + 145698740 145698780 41 GCTCTCGCGCCCGCAGAGGGCCTGCCCCTCTAGTCCTGGGT GCTCTCGCGCCCGCAGAGAGCCTGCCCCTCTAGTCCTGGGT < 41bp 1 0.098754319671649 1 0.101754069328308 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145698760 chr8:145698758 synonymous SNV . 0 19 hm5C_associated_SNPs_8068 0 0 0 0 0 nucleolus 1 0.500231643921063 1 0.999536712157874 hm5C_site_10662 DeepMRMD:1;iRNA_m5C:0.999536712157874 10663 chr8 145727139 145727139 1 + G A rs138353402 145727126 + 145727106 145727146 41 GCGACCCCCACCTGAGGGGCCCGAGAGCCCTGAGACAGCTG GCGACCCCCACCTGAGGGGCCCGAGAGCCCTGAAACAGCTG < 41bp 1 0.283059345916074 1 0.47441229224205 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145727126 chr8:145727139 synonymous SNV . 0 34 hm5C_associated_SNPs_8069 0 0 1 0 0 Ribosome 1 0.500231643921002 1 0.999536712157995 hm5C_site_10663 DeepMRMD:1;iRNA_m5C:0.999536712157995 10664 chr8 145735872 145735872 1 + C A rs180675502 145735855 + 145735835 145735875 41 GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGAACTT < 41bp 1 0.227428447126992 1 0.063158243894577 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735855 chr8:145735872 nonsynonymous SNV 0.024 0 38 hm5C_associated_SNPs_8071 0 0 1 0 1 Ribosome 1 0.500231643835675 1 0.99953671232865 hm5C_site_10664 DeepMRMD:1;iRNA_m5C:0.99953671232865 10665 chr8 145735872 145735872 1 + C A rs180675502 145735858 + 145735838 145735878 41 GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGAACTTGCT < 41bp 1 0.158619093388642 1 0.208446890115738 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735858 chr8:145735872 nonsynonymous SNV 0.024 0 35 hm5C_associated_SNPs_8072 0 0 1 0 1 Ribosome 1 0.50023169466675 1 0.999536610666501 hm5C_site_10665 DeepMRMD:1;iRNA_m5C:0.999536610666501 10666 chr8 145736254 145736254 1 + C T rs73377627 145736271 + 145736251 145736291 41 ATGCGCTGCAGCCAGCTGGCCCCCAGGGCCCTGCAGGTGAG ATGTGCTGCAGCCAGCTGGCCCCCAGGGCCCTGCAGGTGAG < 41bp 1 0.392055782712186 1 0.195359110832214 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736271 chr8:145736254 nonsynonymous SNV 0.993 1 4 hm5C_associated_SNPs_8073 0 0 1 0 1 Ribosome 1 0.500231644023143 1 0.999536711953714 hm5C_site_10666 DeepMRMD:1;iRNA_m5C:0.999536711953714 10667 chr8 145736460 145736460 1 + G C rs570033509 145736472 + 145736452 145736492 41 GATGGGTTGGGGCCACATCCCTGCTTCTTGCTCCTGCTCAT GATGGGTTCGGGCCACATCCCTGCTTCTTGCTCCTGCTCAT < 41bp 1 0.628717228340515 1 0.10076117515564 experiment 0.74256554331897 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736472 chr8:145736460 nonsynonymous SNV 0.001 1 9 hm5C_associated_SNPs_8074 0 0 1 0 1 Ribosome 1 0.500231643921097 1 0.999536712157807 hm5C_site_10667 DeepMRMD:1;iRNA_m5C:0.999536712157807 10668 chr8 146032932 146032932 1 + G A rs140652367 146032912 + 146032892 146032932 41 CATCCACACCGGCGCCAAGCCCTTCCAGTGCACAGAGTGCG CATCCACACCGGCGCCAAGCCCTTCCAGTGCACAGAGTGCA < 41bp 1 0.00963076438545977 1 0.0450288951396942 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146032912 chr8:146032932 nonsynonymous SNV 0.986 2 41 hm5C_associated_SNPs_8075 0 0 0 0 0 chromatin 1 0.500232348405169 1 0.999535303189663 hm5C_site_10668 DeepMRMD:1;iRNA_m5C:0.999535303189663 10669 chr8 146033293 146033293 1 + C T rs528594443 146033291 + 146033271 146033311 41 CAGCGCTTCATCCGAGGGTCCTCGCTCCTGAAGCACCACCG CAGCGCTTCATCCGAGGGTCCTTGCTCCTGAAGCACCACCG < 41bp 1 0.184973497891197 1 0.103798180818558 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146033291 chr8:146033293 nonsynonymous SNV 0.037 1 23 hm5C_associated_SNPs_8076 0 0 0 0 0 chromatin 1 0.500231584154345 1 0.99953683169131 hm5C_site_10669 DeepMRMD:1;iRNA_m5C:0.99953683169131 10670 chr8 146033310 146033310 1 + C T rs189510048 146033291 + 146033271 146033311 41 CAGCGCTTCATCCGAGGGTCCTCGCTCCTGAAGCACCACCG CAGCGCTTCATCCGAGGGTCCTCGCTCCTGAAGCACCACTG < 41bp 1 0.40439327004055 1 0.174159318208694 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146033291 chr8:146033310 nonsynonymous SNV 0.007 2 40 hm5C_associated_SNPs_8077 0 0 0 0 0 chromatin 1 0.500231642130828 1 0.999536715738344 hm5C_site_10670 DeepMRMD:1;iRNA_m5C:0.999536715738344 10671 chr8 146034683 146034683 1 + C T rs114857098 146034698 + 146034678 146034718 41 CGTTTCTCCCACCTTAGCCTCCTGAGTAGCTGGGACTAAGG CGTTTTTCCCACCTTAGCCTCCTGAGTAGCTGGGACTAAGG < 41bp 1 0.0862362980763576 1 0.135398805141449 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOC100130027 ENSG00000197363 UTR3 Human protein_coding chr8:146034698 chr8:146034683 . . 0 6 hm5C_associated_SNPs_8079 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10671 DeepMRMD:1;iRNA_m5C:0.999536712157815 10672 chr8 146277852 146277852 1 + C G rs201179746 146277850 + 146277830 146277870 41 CGGCGTCGGACTCTGCGCCCCGCGTAGTTCCGGTGGCGACT CGGCGTCGGACTCTGCGCCCCGGGTAGTTCCGGTGGCGACT < 41bp 1 0.660143759451333 1 0.764660596847534 experiment 0.679712481097333 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C8orf33 ENSG00000182307 UTR5 Human protein_coding chr8:146277850 chr8:146277852 . . 0 23 hm5C_associated_SNPs_8081 0 0 1 0 1 Ribosome 1 0.500231643921093 0.470678806304932 0.999536712157815 hm5C_site_10672 DeepMRMD:0.470678806304932;iRNA_m5C:0.999536712157815 10673 chr9 4662929 4662929 1 + G A rs149516642 4662948 + 4662928 4662968 41 GGGCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGA GAGCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGA < 41bp 1 0.467528035793595 1 0.572115898132324 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PLPP6 ENSG00000205808 CDS Human protein_coding chr9:4662948 chr9:4662929 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_8083 0 0 0 0 0 Ribosome 1 0.500227477450671 0.855768203735352 0.999545045098659 hm5C_site_10673 DeepMRMD:0.855768203735352;iRNA_m5C:0.999545045098659 10674 chr9 4662929 4662929 1 + G A rs149516642 4662949 + 4662929 4662969 41 GGCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGAC AGCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGAC < 41bp 1 0.284601193713712 1 0.753666818141937 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLPP6 ENSG00000205808 CDS Human protein_coding chr9:4662949 chr9:4662929 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_8084 0 0 0 0 0 Ribosome 1 0.500231643920174 0.492666363716126 0.999536712159652 hm5C_site_10674 DeepMRMD:0.492666363716126;iRNA_m5C:0.999536712159652 10675 chr9 5747307 5747307 1 + C G rs190154814 5747314 + 5747294 5747334 41 TCATTTAGAGTAACCAAGAGCAGGTGTTGCTTCAGGGTGAG TCATTTAGAGTAAGCAAGAGCAGGTGTTGCTTCAGGGTGAG < 41bp 1 0.658651430600658 1 0.682490825653076 experiment 0.682697138798684 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RIC1 ENSG00000107036 CDS Human protein_coding chr9:5747314 chr9:5747307 nonsynonymous SNV 0.999 3 14 hm5C_associated_SNPs_8085 0 0 1 0 0 Nucleus 1 0.500231749667269 0.635018348693848 0.999536500665463 hm5C_site_10675 DeepMRMD:0.635018348693848;iRNA_m5C:0.999536500665463 10676 chr9 6413381 6413381 1 + G C rs562598186 6413397 + 6413377 6413417 41 GCCCGCCTGCCGCTGAGGGCCCGAGCCGCAGGGAAAGCGGC GCCCCCCTGCCGCTGAGGGCCCGAGCCGCAGGGAAAGCGGC < 41bp 1 0.588573184220031 1 0.230863600969315 experiment 0.822853631559938 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UHRF2 ENSG00000147854 UTR5 Human protein_coding chr9:6413397 chr9:6413381 . . 0 5 hm5C_associated_SNPs_8086 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_10676 DeepMRMD:1;iRNA_m5C:0.999536712157816 10677 chr9 6413403 6413403 1 + C T rs548460330 6413397 + 6413377 6413417 41 GCCCGCCTGCCGCTGAGGGCCCGAGCCGCAGGGAAAGCGGC GCCCGCCTGCCGCTGAGGGCCCGAGCTGCAGGGAAAGCGGC < 41bp 1 0.669342364479014 1 0.383988738059998 experiment 0.661315271041972 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UHRF2 ENSG00000147854 UTR5 Human protein_coding chr9:6413397 chr9:6413403 . . 0 27 hm5C_associated_SNPs_8088 0 0 1 0 0 Nucleus 1 0.500231643921764 1 0.999536712156472 hm5C_site_10677 DeepMRMD:1;iRNA_m5C:0.999536712156472 10678 chr9 7174673 7174673 1 + G A rs913588 7174666 + 7174646 7174686 41 TTTAAGAATGAATATGTGGCCGACCCTGTATACCGCACTTT TTTAAGAATGAATATGTGGCCGACCCTATATACCGCACTTT < 41bp 1 0.121694744796119 1 0.0699661076068878 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4C ENSG00000107077 CDS Human protein_coding chr9:7174666 chr9:7174673 nonsynonymous SNV 0.990 0 28 hm5C_associated_SNPs_8090 0 1 0 0 0 Nucleus 1 0.500231643920244 1 0.999536712159513 hm5C_site_10678 DeepMRMD:1;iRNA_m5C:0.999536712159513 10679 chr9 9442075 9442075 1 + G A rs117877710 9442076 + 9442056 9442096 41 ATGCGCCGGGCGCGGTGGCGCGTGCCTGTGGTCCCAGCTAC ATGCGCCGGGCGCGGTGGCACGTGCCTGTGGTCCCAGCTAC < 41bp 1 0.600153477193616 1 0.415599048137665 experiment 0.799693045612767 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPRD ENSG00000265735 ncRNA_exonic Human misc_RNA chr9:9442076 chr9:9442075 . . 0 20 hm5C_associated_SNPs_8091 0 0 0 0 0 Cytosol 1 0.500231643917403 1 0.999536712165193 hm5C_site_10679 DeepMRMD:1;iRNA_m5C:0.999536712165193 10680 chr9 9442075 9442075 1 + G A rs117877710 9442088 + 9442068 9442108 41 CGGTGGCGCGTGCCTGTGGTCCCAGCTACTCGGGAGGCTGA CGGTGGCACGTGCCTGTGGTCCCAGCTACTCGGGAGGCTGA < 41bp 1 0.388536530107335 1 0.363937377929688 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPRD ENSG00000265735 ncRNA_exonic Human misc_RNA chr9:9442088 chr9:9442075 . . 0 8 hm5C_associated_SNPs_8093 0 0 0 0 0 Cytosol 1 0.500231639378698 1 0.999536721242604 hm5C_site_10680 DeepMRMD:1;iRNA_m5C:0.999536721242604 10681 chr9 9442075 9442075 1 + G A rs117877710 9442089 + 9442069 9442109 41 GGTGGCGCGTGCCTGTGGTCCCAGCTACTCGGGAGGCTGAG GGTGGCACGTGCCTGTGGTCCCAGCTACTCGGGAGGCTGAG < 41bp 1 0.333503491142663 1 0.542931497097015 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPRD ENSG00000265735 ncRNA_exonic Human misc_RNA chr9:9442089 chr9:9442075 . . 0 7 hm5C_associated_SNPs_8094 0 0 0 0 0 Cytosol 1 0.500231639247758 0.91413700580597 0.999536721504485 hm5C_site_10681 DeepMRMD:0.91413700580597;iRNA_m5C:0.999536721504485 10682 chr9 9442075 9442075 1 + G A rs117877710 9442093 + 9442073 9442113 41 GCGCGTGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCTG GCACGTGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCTG < 41bp 1 0.437245982976076 1 0.207148313522339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPRD ENSG00000265735 ncRNA_exonic Human misc_RNA chr9:9442093 chr9:9442075 . . 0 3 hm5C_associated_SNPs_8095 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10682 DeepMRMD:1;iRNA_m5C:0.999536712157815 10683 chr9 9442103 9442103 1 + G A rs181292635 9442088 + 9442068 9442108 41 CGGTGGCGCGTGCCTGTGGTCCCAGCTACTCGGGAGGCTGA CGGTGGCGCGTGCCTGTGGTCCCAGCTACTCGGGAAGCTGA < 41bp 1 0.393836363210663 1 0.362542659044266 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPRD ENSG00000265735 ncRNA_exonic Human misc_RNA chr9:9442088 chr9:9442103 . . 0 36 hm5C_associated_SNPs_8096 0 0 1 0 0 Cytosol 1 0.500231076667656 1 0.999537846664688 hm5C_site_10683 DeepMRMD:1;iRNA_m5C:0.999537846664688 10684 chr9 9442103 9442103 1 + G A rs181292635 9442089 + 9442069 9442109 41 GGTGGCGCGTGCCTGTGGTCCCAGCTACTCGGGAGGCTGAG GGTGGCGCGTGCCTGTGGTCCCAGCTACTCGGGAAGCTGAG < 41bp 1 0.281264576040174 1 0.639280200004578 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPRD ENSG00000265735 ncRNA_exonic Human misc_RNA chr9:9442089 chr9:9442103 . . 0 35 hm5C_associated_SNPs_8097 0 0 1 0 0 Cytosol 1 0.500231643917314 0.721439599990844 0.999536712165371 hm5C_site_10684 DeepMRMD:0.721439599990844;iRNA_m5C:0.999536712165371 10685 chr9 9442103 9442103 1 + G A rs181292635 9442093 + 9442073 9442113 41 GCGCGTGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGCTG GCGCGTGCCTGTGGTCCCAGCTACTCGGGAAGCTGAGGCTG < 41bp 1 0.469200510117129 1 0.403967410326004 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPRD ENSG00000265735 ncRNA_exonic Human misc_RNA chr9:9442093 chr9:9442103 . . 0 31 hm5C_associated_SNPs_8098 0 0 1 0 0 Cytosol 1 0.500231643921207 1 0.999536712157586 hm5C_site_10685 DeepMRMD:1;iRNA_m5C:0.999536712157586 10686 chr9 9442211 9442211 1 + G A rs10977749 9442217 + 9442197 9442237 41 GACCTCCCGGGAGCGGGGGACCACCAGGTTGCCTAAGGAGG GACCTCCCGGGAGCAGGGGACCACCAGGTTGCCTAAGGAGG < 41bp 1 0.0607357256122542 1 0.109658092260361 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPRD ENSG00000265735 ncRNA_exonic Human misc_RNA chr9:9442217 chr9:9442211 . . 0 15 hm5C_associated_SNPs_8099 0 0 0 0 0 Cytosol 1 0.500231643921204 1 0.999536712157592 hm5C_site_10686 DeepMRMD:1;iRNA_m5C:0.999536712157592 10687 chr9 9442211 9442211 1 + G A rs10977749 9442228 + 9442208 9442248 41 AGCGGGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGC AGCAGGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGC < 41bp 1 0.274173385806473 1 0.376375943422318 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPRD ENSG00000265735 ncRNA_exonic Human misc_RNA chr9:9442228 chr9:9442211 . . 0 4 hm5C_associated_SNPs_8100 0 0 0 0 0 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_10687 DeepMRMD:1;iRNA_m5C:0.99953671215782 10688 chr9 9442316 9442316 1 + T C rs115803798 9442299 + 9442279 9442319 41 CCGTGCTGATCAGTAGAAGTCTGTAATGCTACTGGTGTCCC CCGTGCTGATCAGTAGAAGTCTGTAATGCTACTGGTGCCCC < 41bp 1 0.577066394395562 1 0.746300101280212 experiment 0.845867211208876 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPRD ENSG00000265735 ncRNA_exonic Human misc_RNA chr9:9442299 chr9:9442316 . . 0 38 hm5C_associated_SNPs_8102 0 0 0 0 0 Cytosol 1 0.500231641055999 0.507399797439576 0.999536717888002 hm5C_site_10688 DeepMRMD:0.507399797439576;iRNA_m5C:0.999536717888002 10689 chr9 15460580 15460580 1 + G A rs532478100 15460596 + 15460576 15460616 41 ACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCT ACGGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCT < 41bp 1 0.646233155315777 1 0.17413654923439 experiment 0.707533689368445 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SNAPC3 ENSG00000164975 UTR3 Human protein_coding chr9:15460596 chr9:15460580 . . 0 5 hm5C_associated_SNPs_8103 0 0 0 0 0 Ribosome 1 0.500231643920938 1 0.999536712158123 hm5C_site_10689 DeepMRMD:1;iRNA_m5C:0.999536712158123 10690 chr9 15460580 15460580 1 + G A rs532478100 15460597 + 15460577 15460617 41 CGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTA CGGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTA < 41bp 1 0.636559057248012 1 0.0827910900115967 experiment 0.726881885503975 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SNAPC3 ENSG00000164975 UTR3 Human protein_coding chr9:15460597 chr9:15460580 . . 0 4 hm5C_associated_SNPs_8104 0 0 0 0 0 Ribosome 1 0.500231673195848 1 0.999536653608304 hm5C_site_10690 DeepMRMD:1;iRNA_m5C:0.999536653608304 10691 chr9 17786428 17786428 1 + C A rs139376322 17786409 + 17786389 17786429 41 TAAGCTCAGCATGATCAACACCATGTCAAAAATCCGTGGCC TAAGCTCAGCATGATCAACACCATGTCAAAAATCCGTGGAC < 41bp 1 0.18927881559002 1 0.113582968711853 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17786409 chr9:17786428 synonymous SNV . 0 40 hm5C_associated_SNPs_8105 0 0 0 0 2 nucleus 1 0.50023164345358 1 0.99953671309284 hm5C_site_10691 DeepMRMD:1;iRNA_m5C:0.99953671309284 10692 chr9 18504866 18504866 1 + C G rs144094882 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGGACGGCGTATGGGATGCCTGGGG < 41bp 1 0.634329666728827 1 0.552129983901978 experiment 0.731340666542345 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504866 nonsynonymous SNV 0.974 1 25 hm5C_associated_SNPs_8106 0 0 0 0 1 Nucleus 1 0.500231643921092 0.895740032196044 0.999536712157815 hm5C_site_10692 DeepMRMD:0.895740032196044;iRNA_m5C:0.999536712157815 10693 chr9 18504868 18504868 1 + A C rs61742718 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGGACGGCCTCTGGGATGCCTGGGG < 41bp 1 0.302956130121601 1 0.300521016120911 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504868 synonymous SNV . 0 27 hm5C_associated_SNPs_8107 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10693 DeepMRMD:1;iRNA_m5C:0.999536712157815 10694 chr9 18887959 18887959 1 + C T rs149522121 18887949 + 18887929 18887969 41 TGGACAGATCCTTCAAGTTGCAAACCTTAGCGGTGGGTCTC TGGACAGATCCTTCAAGTTGCAAACCTTAGTGGTGGGTCTC < 41bp 1 0.0584163164091355 1 0.0970111489295959 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18887949 chr9:18887959 synonymous SNV . 0 31 hm5C_associated_SNPs_8108 0 0 0 0 1 Nucleus 1 0.500231647829833 1 0.999536704340334 hm5C_site_10694 DeepMRMD:1;iRNA_m5C:0.999536704340334 10695 chr9 19336781 19336781 1 + C T rs570387726 19336770 + 19336750 19336790 41 ATGATGCTAACAATGGGGAGCACACAGTCTTCGTCAGAGAT ATGATGCTAACAATGGGGAGCACACAGTCTTTGTCAGAGAT < 41bp 1 0.0535975970838051 1 0.276986479759216 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336770 chr9:19336781 synonymous SNV . 0 32 hm5C_associated_SNPs_8109 0 0 1 0 1 Nucleus 1 0.500231643436323 1 0.999536713127354 hm5C_site_10695 DeepMRMD:1;iRNA_m5C:0.999536713127354 10696 chr9 20658425 20658425 1 + T C rs147788988 20658422 + 20658402 20658442 41 CAGACTGCTGTGCTAGCAATCAGTGAGACTCCGTGGGCGTA CAGACTGCTGTGCTAGCAATCAGCGAGACTCCGTGGGCGTA < 41bp 1 0.597873135604887 1 0.942455649375916 experiment 0.804253728790227 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FOCAD ENSG00000188352 UTR5 Human protein_coding chr9:20658422 chr9:20658425 . . 0 24 hm5C_associated_SNPs_8110 0 0 0 0 1 Ribosome 1 0.500258571148067 0.115088701248168 0.999482857703865 hm5C_site_10696 DeepMRMD:0.115088701248168;iRNA_m5C:0.999482857703865 10697 chr9 20786994 20786994 1 + G A rs10511686 20787003 + 20786983 20787023 41 TGAGAGAAAACGCTTGATTGCATCCTTGCCCTGGGACTGTG TGAGAGAAAACACTTGATTGCATCCTTGCCCTGGGACTGTG < 41bp 1 0.0450061963906952 1 0.0414016544818878 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA30B ENSG00000202189 ncRNA_exonic Human snoRNA chr9:20787003 chr9:20786994 . . 0 12 hm5C_associated_SNPs_8111 0 0 1 0 0 unknown 1 0.500231643921015 1 0.999536712157969 hm5C_site_10697 DeepMRMD:1;iRNA_m5C:0.999536712157969 10698 chr9 20786994 20786994 1 + G A rs10511686 20787006 + 20786986 20787026 41 GAGAAAACGCTTGATTGCATCCTTGCCCTGGGACTGTGCCA GAGAAAACACTTGATTGCATCCTTGCCCTGGGACTGTGCCA < 41bp 1 0.0154354372659121 1 0.0649788379669189 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA30B ENSG00000202189 ncRNA_exonic Human snoRNA chr9:20787006 chr9:20786994 . . 0 9 hm5C_associated_SNPs_8112 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10698 DeepMRMD:1;iRNA_m5C:0.999536712157815 10699 chr9 20786994 20786994 1 + G A rs10511686 20787011 + 20786991 20787031 41 AACGCTTGATTGCATCCTTGCCCTGGGACTGTGCCAGTGGC AACACTTGATTGCATCCTTGCCCTGGGACTGTGCCAGTGGC < 41bp 1 0.0358679551753603 1 0.0714086592197418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA30B ENSG00000202189 ncRNA_exonic Human snoRNA chr9:20787011 chr9:20786994 . . 0 4 hm5C_associated_SNPs_8113 0 0 1 0 0 unknown 1 0.500231616996296 1 0.999536766007408 hm5C_site_10699 DeepMRMD:1;iRNA_m5C:0.999536766007408 10700 chr9 20786994 20786994 1 + G A rs10511686 20787012 + 20786992 20787032 41 ACGCTTGATTGCATCCTTGCCCTGGGACTGTGCCAGTGGCA ACACTTGATTGCATCCTTGCCCTGGGACTGTGCCAGTGGCA < 41bp 1 0.0749776238824219 1 0.283380150794983 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA30B ENSG00000202189 ncRNA_exonic Human snoRNA chr9:20787012 chr9:20786994 . . 0 3 hm5C_associated_SNPs_8114 0 0 1 0 0 unknown 1 0.500231643900131 1 0.999536712199738 hm5C_site_10700 DeepMRMD:1;iRNA_m5C:0.999536712199738 10701 chr9 20923668 20923668 1 + G A rs59400819 20923667 + 20923647 20923687 41 CCTTTTGAACAGGGAGAGTCCGGTAGTGAAAGGCAATGCGC CCTTTTGAACAGGGAGAGTCCAGTAGTGAAAGGCAATGCGC < 41bp 1 0.511982323575332 1 0.278410762548447 experiment 0.976035352849337 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20923667 chr9:20923668 synonymous SNV . 0 22 hm5C_associated_SNPs_8115 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10701 DeepMRMD:1;iRNA_m5C:0.999536712157815 10702 chr9 20990240 20990240 1 + C G rs76872931 20990239 + 20990219 20990259 41 CATGGCATCAGGAGAATGGCCCGGCTGGGCCAGTACCAAGC CATGGCATCAGGAGAATGGCCGGGCTGGGCCAGTACCAAGC < 41bp 1 0.583314373737855 1 0.772090494632721 experiment 0.83337125252429 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990239 chr9:20990240 nonsynonymous SNV 0.196 1 22 hm5C_associated_SNPs_8116 0 0 1 0 0 Ribosome 1 0.500231643921093 0.455819010734558 0.999536712157815 hm5C_site_10702 DeepMRMD:0.455819010734558;iRNA_m5C:0.999536712157815 10703 chr9 20990240 20990240 1 + C G rs76872931 20990248 + 20990228 20990268 41 AGGAGAATGGCCCGGCTGGGCCAGTACCAAGCTTCCTTGGC AGGAGAATGGCCGGGCTGGGCCAGTACCAAGCTTCCTTGGC < 41bp 1 0.254809441003016 1 0.0964495539665222 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990248 chr9:20990240 nonsynonymous SNV 0.196 1 13 hm5C_associated_SNPs_8117 0 0 1 0 0 Ribosome 1 0.500231643758368 1 0.999536712483265 hm5C_site_10703 DeepMRMD:1;iRNA_m5C:0.999536712483265 10704 chr9 20990240 20990240 1 + C G rs76872931 20990249 + 20990229 20990269 41 GGAGAATGGCCCGGCTGGGCCAGTACCAAGCTTCCTTGGCA GGAGAATGGCCGGGCTGGGCCAGTACCAAGCTTCCTTGGCA < 41bp 1 0.479735254172469 1 0.209919482469559 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990249 chr9:20990240 nonsynonymous SNV 0.196 1 12 hm5C_associated_SNPs_8118 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10704 DeepMRMD:1;iRNA_m5C:0.999536712157815 10705 chr9 21859379 21859379 1 + T G rs62556500 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATACCGCAGATAGGGTCCACAGAATGGTCAGAAACCCT < 41bp 1 0.311530670450125 1 0.251135289669037 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859379 synonymous SNV . 0 9 hm5C_associated_SNPs_8119 1 0 1 1 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10705 DeepMRMD:1;iRNA_m5C:0.999536712157815 Diaphyseal medullary stenosis with malignant fibrous histiocytoma Diaphyseal medullary stenosis with malignant fibrous histiocytoma 10706 chr9 22056295 22056295 1 + T A rs7853090 22056276 + 22056256 22056296 41 ACGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCTC ACGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCAC < 41bp 1 0.446964537078805 1 0.222072541713715 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDKN2B-AS1 ENSG00000240498 ncRNA_exonic Human antisense chr9:22056276 chr9:22056295 . . 0 40 hm5C_associated_SNPs_8120 0 0 0 0 2 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_10706 DeepMRMD:1;iRNA_m5C:0.999536712157815 10707 chr9 22056295 22056295 1 + T A rs7853090 22056277 + 22056257 22056297 41 CGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCTCG CGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCACG < 41bp 1 0.134392098280188 1 0.0746463537216187 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDKN2B-AS1 ENSG00000240498 ncRNA_exonic Human antisense chr9:22056277 chr9:22056295 . . 0 39 hm5C_associated_SNPs_8121 0 0 0 0 2 unknown 1 0.50023164388387 1 0.99953671223226 hm5C_site_10707 DeepMRMD:1;iRNA_m5C:0.99953671223226 10708 chr9 33025324 33025324 1 + C G rs77871808 33025343 + 33025323 33025363 41 GCTGCGCACAGCTCGGCGCTCCTTCCCGCTCCCTCACACAC GGTGCGCACAGCTCGGCGCTCCTTCCCGCTCCCTCACACAC < 41bp 1 0.166408876652063 1 0.0929149389266968 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNAJA1 ENSG00000086061 UTR5 Human protein_coding chr9:33025343 chr9:33025324 . . 0 2 hm5C_associated_SNPs_8122 0 0 1 0 1 Cytosol 1 0.500231643857925 1 0.999536712284151 hm5C_site_10708 DeepMRMD:1;iRNA_m5C:0.999536712284151 10709 chr9 33290532 33290532 1 + A C rs830576 33290533 + 33290513 33290553 41 TGACCTGGTGACAGTGCTGACTTGGCTGTACAGCTCGATCT TGACCTGGTGACAGTGCTGCCTTGGCTGTACAGCTCGATCT < 41bp 1 0.69873630431236 1 0.0544207990169525 experiment 0.60252739137528 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFX1 ENSG00000086102 UTR5 Human protein_coding chr9:33290533 chr9:33290532 . . 0 20 hm5C_associated_SNPs_8123 0 0 0 0 1 Nucleus 1 0.50033597097323 1 0.999328058053541 hm5C_site_10709 DeepMRMD:1;iRNA_m5C:0.999328058053541 10710 chr9 33290532 33290532 1 + A C rs830576 33290543 + 33290523 33290563 41 ACAGTGCTGACTTGGCTGTACAGCTCGATCTAGGTTCTGCG ACAGTGCTGCCTTGGCTGTACAGCTCGATCTAGGTTCTGCG < 41bp 1 0.535134533467313 1 0.0422392785549164 experiment 0.929730933065375 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFX1 ENSG00000086102 UTR5 Human protein_coding chr9:33290543 chr9:33290532 . . 0 10 hm5C_associated_SNPs_8124 0 0 0 0 1 Nucleus 1 0.500249509619294 1 0.999500980761413 hm5C_site_10710 DeepMRMD:1;iRNA_m5C:0.999500980761413 10711 chr9 33313652 33313652 1 + G A rs557655235 33313662 + 33313642 33313682 41 GTCTTTACAGGCACACAGTTCGCTGTGGTCAGGCTGTCTCA GTCTTTACAGACACACAGTTCGCTGTGGTCAGGCTGTCTCA < 41bp 1 0.393441254916752 1 0.568991184234619 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33313662 chr9:33313652 synonymous SNV . 0 11 hm5C_associated_SNPs_8125 0 0 1 0 1 Nucleus 1 0.500236642131245 0.862017631530762 0.99952671573751 hm5C_site_10711 DeepMRMD:0.862017631530762;iRNA_m5C:0.99952671573751 10712 chr9 33348074 33348074 1 + C T rs558595523 33348088 + 33348068 33348108 41 TCCGAGCACGGTGGCTCATGCCTATAATCCCAGCACTTTGG TCCGAGTACGGTGGCTCATGCCTATAATCCCAGCACTTTGG < 41bp 1 0.0268201311630559 1 0.0305065810680389 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFX1 ENSG00000086102 UTR3 Human protein_coding chr9:33348088 chr9:33348074 . . 0 7 hm5C_associated_SNPs_8126 0 0 1 0 0 Nucleus 1 0.500231643936403 1 0.999536712127194 hm5C_site_10712 DeepMRMD:1;iRNA_m5C:0.999536712127194 10713 chr9 33366682 33366682 1 + G A rs146508853 33366677 + 33366657 33366697 41 CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTT CCTCCCATGAACAGAGACCACCGCCAGATCATCCATGACTT < 41bp 1 0.202513553413176 1 0.118157088756561 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366677 chr9:33366682 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_8127 0 0 1 0 2 Nucleus 1 0.500231696776715 1 0.99953660644657 hm5C_site_10713 DeepMRMD:1;iRNA_m5C:0.99953660644657 10714 chr9 33367595 33367595 1 + C T rs566535660 33367611 + 33367591 33367631 41 TCCTCATCACAGACATCAGTCAGACAAGTAAGATTCTCCAG TCCTTATCACAGACATCAGTCAGACAAGTAAGATTCTCCAG < 41bp 1 0.413099403819916 1 0.479667723178864 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33367611 chr9:33367595 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_8128 0 0 0 0 2 Nucleus 1 0.500231349183313 1 0.999537301633373 hm5C_site_10714 DeepMRMD:1;iRNA_m5C:0.999537301633373 10715 chr9 33624646 33624646 1 + G A rs139215063 33624632 + 33624612 33624652 41 TAAAAGCTTCCATGAAGGGGCTAGGAACCGACGAGGACTCT TAAAAGCTTCCATGAAGGGGCTAGGAACCGACGAAGACTCT < 41bp 1 0.489367819716583 1 0.374154448509216 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANXA2P2 ENSG00000231991 ncRNA_exonic Human processed_pseudogene chr9:33624632 chr9:33624646 . . 0 35 hm5C_associated_SNPs_8130 0 0 0 0 0 unknown 1 0.500231643921095 1 0.99953671215781 hm5C_site_10715 DeepMRMD:1;iRNA_m5C:0.99953671215781 10716 chr9 34196373 34196373 1 + G A rs180983078 34196392 + 34196372 34196412 41 GGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTC GACGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTC < 41bp 1 0.236517013835915 1 0.451317071914673 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBAP1 ENSG00000165006 UTR5 Human protein_coding chr9:34196392 chr9:34196373 . . 0 2 hm5C_associated_SNPs_8131 0 0 0 0 2 Ribosome 1 0.500230992805279 1 0.999538014389441 hm5C_site_10716 DeepMRMD:1;iRNA_m5C:0.999538014389441 10717 chr9 34196399 34196399 1 + T A rs139546201 34196392 + 34196372 34196412 41 GGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTC GGCGTGATCTCGGCTCACTGCAACCTCAGCCTCCTGGGTTC < 41bp 1 0.293680164564756 1 0.572274327278137 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBAP1 ENSG00000165006 UTR5 Human protein_coding chr9:34196392 chr9:34196399 . . 0 28 hm5C_associated_SNPs_8132 0 0 0 0 2 Ribosome 1 0.500231642205076 0.855451345443726 0.999536715589848 hm5C_site_10717 DeepMRMD:0.855451345443726;iRNA_m5C:0.999536715589848 10718 chr9 34338718 34338718 1 + G A rs141762241 34338713 + 34338693 34338733 41 ACATCTCTCTTGTTTCAGTGCGTTTGCTTCTGAGGATCTCC ACATCTCTCTTGTTTCAGTGCGTTTACTTCTGAGGATCTCC < 41bp 1 0.0541532795915031 1 0.0850545465946198 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUDT2 ENSG00000164978 UTR5 Human protein_coding chr9:34338713 chr9:34338718 . . 0 26 hm5C_associated_SNPs_8133 0 0 1 0 1 Ribosome 1 0.500231625458303 1 0.999536749083394 hm5C_site_10718 DeepMRMD:1;iRNA_m5C:0.999536749083394 10719 chr9 34997703 34997703 1 + A C rs181056420 34997698 + 34997678 34997718 41 ACATTGCTTTCTCAGCCCCACCCCCAGGTCCACAGTGTCCA ACATTGCTTTCTCAGCCCCACCCCCCGGTCCACAGTGTCCA < 41bp 1 0.063835453389101 1 0.0285185873508453 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNAJB5 ENSG00000137094 UTR3 Human protein_coding chr9:34997698 chr9:34997703 . . 0 26 hm5C_associated_SNPs_8134 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10719 DeepMRMD:1;iRNA_m5C:0.999536712157815 10720 chr9 35660955 35660955 1 + C A rs151243859 35660941 + 35660921 35660961 41 ATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCCTGAGGA ATCTCTCCCCACACAGAGGCCAGCAGACCTCTTCATGAGGA < 41bp 1 0.668992320289693 1 0.195465922355652 experiment 0.662015359420613 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660941 chr9:35660955 nonsynonymous SNV 0.386 1 35 hm5C_associated_SNPs_8135 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643878926 1 0.999536712242148 hm5C_site_10720 DeepMRMD:1;iRNA_m5C:0.999536712242148 10721 chr9 35733402 35733402 1 + A G rs11538707 35733405 + 35733385 35733425 41 TACCCTAGGAGATTGCTAGGCTAGTACTGACAGATGAGGAG TACCCTAGGAGATTGCTGGGCTAGTACTGACAGATGAGGAG < 41bp 1 0.247119127685576 1 0.168048739433289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733405 chr9:35733402 nonsynonymous SNV 0.452 1 18 hm5C_associated_SNPs_8136 0 0 1 0 2 Endoplasmic reticulum 1 0.500231634019034 1 0.999536731961931 hm5C_site_10721 DeepMRMD:1;iRNA_m5C:0.999536731961931 10722 chr9 35733402 35733402 1 + A G rs11538707 35733411 + 35733391 35733431 41 AGGAGATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGT AGGAGATTGCTGGGCTAGTACTGACAGATGAGGAGAAGAGT < 41bp 1 0.212607527667576 1 0.388824135065079 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733411 chr9:35733402 nonsynonymous SNV 0.452 1 12 hm5C_associated_SNPs_8137 0 0 1 0 2 Endoplasmic reticulum 1 0.500231628748079 1 0.999536742503841 hm5C_site_10722 DeepMRMD:1;iRNA_m5C:0.999536742503841 10723 chr9 35733402 35733402 1 + A G rs11538707 35733415 + 35733395 35733435 41 GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT GATTGCTGGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT < 41bp 1 0.402289396457802 1 0.336936712265015 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733415 chr9:35733402 nonsynonymous SNV 0.452 1 8 hm5C_associated_SNPs_8138 0 0 1 0 2 Endoplasmic reticulum 1 0.500231518101137 1 0.999536963797727 hm5C_site_10723 DeepMRMD:1;iRNA_m5C:0.999536963797727 10724 chr9 35733434 35733434 1 + A G rs149239671 35733415 + 35733395 35733435 41 GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTGT < 41bp 1 0.346388535130099 1 0.193978905677795 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733415 chr9:35733434 synonymous SNV . 0 40 hm5C_associated_SNPs_8139 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643679583 1 0.999536712640835 hm5C_site_10724 DeepMRMD:1;iRNA_m5C:0.999536712640835 10725 chr9 35793054 35793054 1 + A T rs191155989 35793057 + 35793037 35793077 41 AGCAGGCCACCCACTTCATCCGGGCCAACGGGCGCAGTGAG AGCAGGCCACCCACTTCTTCCGGGCCAACGGGCGCAGTGAG < 41bp 1 0.573431167428663 1 0.938083648681641 experiment 0.853137665142674 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NPR2 ENSG00000159899 CDS Human protein_coding chr9:35793057 chr9:35793054 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_8140 1 0 0 0 1 chromatin 1 0.500231643921003 0.123832702636718 0.999536712157994 hm5C_site_10725 DeepMRMD:0.123832702636718;iRNA_m5C:0.999536712157994 Acromesomelic Dysplasia Acromesomelic Dysplasia 10726 chr9 36162426 36162426 1 + C T rs73648727 36162431 + 36162411 36162451 41 GGCGTCCGCAAGTGACGGGTCCTCCTTTGTGGTGGCCAGAT GGCGTCCGCAAGTGATGGGTCCTCCTTTGTGGTGGCCAGAT < 41bp 1 0.0807302911457951 1 0.0488678216934204 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLIPR2 ENSG00000122694 CDS Human protein_coding chr9:36162431 chr9:36162426 synonymous SNV . 0 16 hm5C_associated_SNPs_8141 0 0 0 0 1 Ribosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_10726 DeepMRMD:1;iRNA_m5C:0.999536712157811 10727 chr9 36163665 36163665 1 + G T rs7874174 36163676 + 36163656 36163696 41 AAGGTCCATGTGGGAGGGACCAACCCAGATGCCCTGCTGAG AAGGTCCATTTGGGAGGGACCAACCCAGATGCCCTGCTGAG < 41bp 1 0.261759359380114 1 0.226966261863708 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLIPR2 ENSG00000122694 UTR3 Human protein_coding chr9:36163676 chr9:36163665 . . 0 10 hm5C_associated_SNPs_8143 0 0 0 2 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_10727 DeepMRMD:1;iRNA_m5C:0.999536712157814 10728 chr9 36163671 36163671 1 + G T rs74499081 36163676 + 36163656 36163696 41 AAGGTCCATGTGGGAGGGACCAACCCAGATGCCCTGCTGAG AAGGTCCATGTGGGATGGACCAACCCAGATGCCCTGCTGAG < 41bp 1 0.26830822608398 1 0.191014498472214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLIPR2 ENSG00000122694 UTR3 Human protein_coding chr9:36163676 chr9:36163671 . . 0 16 hm5C_associated_SNPs_8144 0 0 0 2 0 Ribosome 1 0.500231643943591 1 0.999536712112818 hm5C_site_10728 DeepMRMD:1;iRNA_m5C:0.999536712112818 10729 chr9 36604079 36604079 1 + G A rs369220918 36604077 + 36604057 36604097 41 CCCGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAATTG CCCGAGTTCAAGCGATTCTCCTACCTCAGCCTCCCGAATTG < 41bp 1 0.450214251657973 1 0.0788038372993469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MELK ENSG00000165304 UTR5 Human protein_coding chr9:36604077 chr9:36604079 . . 0 23 hm5C_associated_SNPs_8145 0 0 0 0 2 chromatin 1 0.500231611544002 1 0.999536776911996 hm5C_site_10729 DeepMRMD:1;iRNA_m5C:0.999536776911996 10730 chr9 36604091 36604091 1 + C T rs559707978 36604077 + 36604057 36604097 41 CCCGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAATTG CCCGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAATTG < 41bp 1 0.522070817181799 1 0.090776801109314 experiment 0.955858365636402 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MELK ENSG00000165304 UTR5 Human protein_coding chr9:36604077 chr9:36604091 . . 0 35 hm5C_associated_SNPs_8147 0 0 0 0 1 chromatin 1 0.500231636682976 1 0.999536726634048 hm5C_site_10730 DeepMRMD:1;iRNA_m5C:0.999536726634048 10731 chr9 37422700 37422700 1 + C A rs149749351 37422705 + 37422685 37422725 41 GCCCAGCTACATTCCCGGGCCAGCTTCTGTACTGCCAGGTC GCCCAGCTACATTCCAGGGCCAGCTTCTGTACTGCCAGGTC < 41bp 1 0.430996386970687 1 0.391585260629654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GRHPR ENSG00000137106 UTR5 Human protein_coding chr9:37422705 chr9:37422700 . . 0 16 hm5C_associated_SNPs_8149 0 0 1 0 0 Ribosome 1 0.500231676467663 1 0.999536647064674 hm5C_site_10731 DeepMRMD:1;iRNA_m5C:0.999536647064674 10732 chr9 37428796 37428796 1 + T C rs309462 37428787 + 37428767 37428807 41 AACTCACCAGGTGATAAAAGCAAGTTGCCTAAGGGTCAGGG AACTCACCAGGTGATAAAAGCAAGTTGCCCAAGGGTCAGGG < 41bp 1 0.314622584768924 1 0.49571493268013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 intronic Human protein_coding chr9:37428787 chr9:37428796 . . 0 30 hm5C_associated_SNPs_8150 0 0 1 0 0 Ribosome 1 0.500231643921087 1 0.999536712157827 hm5C_site_10732 DeepMRMD:1;iRNA_m5C:0.999536712157827 10733 chr9 37428908 37428908 1 + A G rs370451439 37428890 + 37428870 37428910 41 GAGTGGTTACCGTGAGAGAGCCCATTCCCCCGACACCTACT GAGTGGTTACCGTGAGAGAGCCCATTCCCCCGACACCTGCT < 41bp 1 0.096795476636496 1 0.0861759185791016 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 intronic Human protein_coding chr9:37428890 chr9:37428908 . . 0 39 hm5C_associated_SNPs_8151 0 0 1 0 0 Ribosome 1 0.500231643921089 1 0.999536712157823 hm5C_site_10733 DeepMRMD:1;iRNA_m5C:0.999536712157823 10734 chr9 37501746 37501746 1 + G C rs148401018 37501742 + 37501722 37501762 41 AATTTCGGATTCTATGAAGGCGAAGATTACTGCATATGTGA AATTTCGGATTCTATGAAGGCGAACATTACTGCATATGTGA < 41bp 1 0.136516438632701 1 0.165109664201736 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37501742 chr9:37501746 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_8152 0 0 0 0 2 Ribosome 1 0.500231643921349 1 0.999536712157302 hm5C_site_10734 DeepMRMD:1;iRNA_m5C:0.999536712157302 10735 chr9 37501752 37501752 1 + T C rs17412622 37501742 + 37501722 37501762 41 AATTTCGGATTCTATGAAGGCGAAGATTACTGCATATGTGA AATTTCGGATTCTATGAAGGCGAAGATTACCGCATATGTGA < 41bp 1 0.38970177115989 1 0.356542706489563 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37501742 chr9:37501752 synonymous SNV . 0 31 hm5C_associated_SNPs_8153 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10735 DeepMRMD:1;iRNA_m5C:0.999536712157815 10736 chr9 38396502 38396502 1 + G A rs4878199 38396501 + 38396481 38396521 41 GGTGCGGCCATCGCCCAGCACGTGGATGTTGACAAAGTTGC GGTGCGGCCATCGCCCAGCACATGGATGTTGACAAAGTTGC < 41bp 1 0.451775821253164 1 0.144369214773178 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALDH1B1 ENSG00000137124 CDS Human protein_coding chr9:38396501 chr9:38396502 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_8154 1 0 0 0 0 Cytosol 1 0.500232434445216 1 0.999535131109568 hm5C_site_10736 DeepMRMD:1;iRNA_m5C:0.999535131109568 not specified not specified 10737 chr9 38398398 38398398 1 + G A rs189356666 38398390 + 38398370 38398410 41 GGTGTGATCTCGTCTCACTGCAACCTCCGCCTCCCAGATTC GGTGTGATCTCGTCTCACTGCAACCTCCACCTCCCAGATTC < 41bp 1 0.472848804025484 1 0.0675857663154602 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398390 chr9:38398398 . . 0 29 hm5C_associated_SNPs_8156 0 0 0 0 0 Cytosol 1 0.500231643923887 1 0.999536712152225 hm5C_site_10737 DeepMRMD:1;iRNA_m5C:0.999536712152225 10738 chr9 38398398 38398398 1 + G A rs189356666 38398393 + 38398373 38398413 41 GTGATCTCGTCTCACTGCAACCTCCGCCTCCCAGATTCAAG GTGATCTCGTCTCACTGCAACCTCCACCTCCCAGATTCAAG < 41bp 1 0.066709183294387 1 0.154384344816208 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398393 chr9:38398398 . . 0 26 hm5C_associated_SNPs_8157 0 0 0 0 0 Cytosol 1 0.500231643694546 1 0.999536712610908 hm5C_site_10738 DeepMRMD:1;iRNA_m5C:0.999536712610908 10739 chr9 38398398 38398398 1 + G A rs189356666 38398394 + 38398374 38398414 41 TGATCTCGTCTCACTGCAACCTCCGCCTCCCAGATTCAAGC TGATCTCGTCTCACTGCAACCTCCACCTCCCAGATTCAAGC < 41bp 1 0.635264998513609 1 0.811146438121796 experiment 0.729470002972782 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398394 chr9:38398398 . . 0 25 hm5C_associated_SNPs_8158 0 0 0 0 0 Cytosol 1 0.500231792695422 0.377707123756408 0.999536414609156 hm5C_site_10739 DeepMRMD:0.377707123756408;iRNA_m5C:0.999536414609156 10740 chr9 38398398 38398398 1 + G A rs189356666 38398396 + 38398376 38398416 41 ATCTCGTCTCACTGCAACCTCCGCCTCCCAGATTCAAGCGA ATCTCGTCTCACTGCAACCTCCACCTCCCAGATTCAAGCGA < 41bp 1 0.220836472042754 1 0.0544275045394897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398396 chr9:38398398 . . 0 23 hm5C_associated_SNPs_8159 0 0 0 0 0 Cytosol 1 0.500231643943612 1 0.999536712112776 hm5C_site_10740 DeepMRMD:1;iRNA_m5C:0.999536712112776 10741 chr9 38398398 38398398 1 + G A rs189356666 38398397 + 38398377 38398417 41 TCTCGTCTCACTGCAACCTCCGCCTCCCAGATTCAAGCGAT TCTCGTCTCACTGCAACCTCCACCTCCCAGATTCAAGCGAT < 41bp 1 0.530077132334505 1 0.283442854881287 experiment 0.939845735330991 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398397 chr9:38398398 . . 0 22 hm5C_associated_SNPs_8160 0 0 0 0 0 Cytosol 1 0.500231644149847 1 0.999536711700307 hm5C_site_10741 DeepMRMD:1;iRNA_m5C:0.999536711700307 10742 chr9 38398398 38398398 1 + G A rs189356666 38398399 + 38398379 38398419 41 TCGTCTCACTGCAACCTCCGCCTCCCAGATTCAAGCGATTC TCGTCTCACTGCAACCTCCACCTCCCAGATTCAAGCGATTC < 41bp 1 0.0696162543262875 1 0.0531361699104309 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398399 chr9:38398398 . . 0 20 hm5C_associated_SNPs_8161 0 0 0 0 0 Cytosol 1 0.500231645661108 1 0.999536708677784 hm5C_site_10742 DeepMRMD:1;iRNA_m5C:0.999536708677784 10743 chr9 38398398 38398398 1 + G A rs189356666 38398400 + 38398380 38398420 41 CGTCTCACTGCAACCTCCGCCTCCCAGATTCAAGCGATTCT CGTCTCACTGCAACCTCCACCTCCCAGATTCAAGCGATTCT < 41bp 1 0.349954142150331 1 0.241683125495911 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398400 chr9:38398398 . . 0 19 hm5C_associated_SNPs_8162 0 0 0 0 0 Cytosol 1 0.500231629988429 1 0.999536740023142 hm5C_site_10743 DeepMRMD:1;iRNA_m5C:0.999536740023142 10744 chr9 38398398 38398398 1 + G A rs189356666 38398402 + 38398382 38398422 41 TCTCACTGCAACCTCCGCCTCCCAGATTCAAGCGATTCTCC TCTCACTGCAACCTCCACCTCCCAGATTCAAGCGATTCTCC < 41bp 1 0.474676321815736 1 0.222596824169159 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398402 chr9:38398398 . . 0 17 hm5C_associated_SNPs_8163 0 0 0 0 0 Cytosol 1 0.500231643921032 1 0.999536712157936 hm5C_site_10744 DeepMRMD:1;iRNA_m5C:0.999536712157936 10745 chr9 38398398 38398398 1 + G A rs189356666 38398403 + 38398383 38398423 41 CTCACTGCAACCTCCGCCTCCCAGATTCAAGCGATTCTCCT CTCACTGCAACCTCCACCTCCCAGATTCAAGCGATTCTCCT < 41bp 1 0.537984242220846 1 0.131122171878815 experiment 0.924031515558308 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398403 chr9:38398398 . . 0 16 hm5C_associated_SNPs_8164 0 0 0 0 0 Cytosol 1 0.500231644249415 1 0.99953671150117 hm5C_site_10745 DeepMRMD:1;iRNA_m5C:0.99953671150117 10746 chr9 38398398 38398398 1 + G A rs189356666 38398404 + 38398384 38398424 41 TCACTGCAACCTCCGCCTCCCAGATTCAAGCGATTCTCCTG TCACTGCAACCTCCACCTCCCAGATTCAAGCGATTCTCCTG < 41bp 1 0.597468611664779 1 0.252440392971039 experiment 0.805062776670442 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398404 chr9:38398398 . . 0 15 hm5C_associated_SNPs_8165 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10746 DeepMRMD:1;iRNA_m5C:0.999536712157815 10747 chr9 38398559 38398559 1 + G A rs192713382 38398553 + 38398533 38398573 41 AACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAA AACTCCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAA < 41bp 1 0.275897718078101 1 0.0902552306652069 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398553 chr9:38398559 . . 0 27 hm5C_associated_SNPs_8166 0 0 0 1 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_10747 DeepMRMD:1;iRNA_m5C:0.999536712157816 10748 chr9 38398559 38398559 1 + G A rs192713382 38398556 + 38398536 38398576 41 TCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGT TCCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGT < 41bp 1 0.24312776442979 1 0.051736444234848 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398556 chr9:38398559 . . 0 24 hm5C_associated_SNPs_8168 0 0 0 1 0 Cytosol 1 0.500231644029471 1 0.999536711941059 hm5C_site_10748 DeepMRMD:1;iRNA_m5C:0.999536711941059 10749 chr9 38398559 38398559 1 + G A rs192713382 38398557 + 38398537 38398577 41 CCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTG CCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTG < 41bp 1 0.294404306994217 1 0.23681166768074 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398557 chr9:38398559 . . 0 23 hm5C_associated_SNPs_8169 0 0 0 1 0 Cytosol 1 0.500231647153377 1 0.999536705693246 hm5C_site_10749 DeepMRMD:1;iRNA_m5C:0.999536705693246 10750 chr9 38398559 38398559 1 + G A rs192713382 38398558 + 38398538 38398578 41 CTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGC CTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGC < 41bp 1 0.476428071138503 1 0.0556942820549011 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398558 chr9:38398559 . . 0 22 hm5C_associated_SNPs_8170 0 0 0 1 0 Cytosol 1 0.500231641632017 1 0.999536716735965 hm5C_site_10750 DeepMRMD:1;iRNA_m5C:0.999536716735965 10751 chr9 38398559 38398559 1 + G A rs192713382 38398560 + 38398540 38398580 41 GACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTG GACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTG < 41bp 1 0.422197460230935 1 0.0637930035591125 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398560 chr9:38398559 . . 0 20 hm5C_associated_SNPs_8171 0 0 0 1 0 Cytosol 1 0.500231598161927 1 0.999536803676146 hm5C_site_10751 DeepMRMD:1;iRNA_m5C:0.999536803676146 10752 chr9 38398559 38398559 1 + G A rs192713382 38398561 + 38398541 38398581 41 ACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGG ACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGG < 41bp 1 0.544492365570388 1 0.149815648794174 experiment 0.911015268859225 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398561 chr9:38398559 . . 0 19 hm5C_associated_SNPs_8172 0 0 0 1 0 Cytosol 1 0.500231643904112 1 0.999536712191776 hm5C_site_10752 DeepMRMD:1;iRNA_m5C:0.999536712191776 10753 chr9 38398559 38398559 1 + G A rs192713382 38398563 + 38398543 38398583 41 CTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGA CTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGA < 41bp 1 0.676475586293688 1 0.339799880981445 experiment 0.647048827412624 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398563 chr9:38398559 . . 0 17 hm5C_associated_SNPs_8173 0 0 0 1 0 Cytosol 1 0.500321881689487 1 0.999356236621026 hm5C_site_10753 DeepMRMD:1;iRNA_m5C:0.999356236621026 10754 chr9 38398559 38398559 1 + G A rs192713382 38398566 + 38398546 38398586 41 AGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTA AGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTA < 41bp 1 0.148441808015687 1 0.074014276266098 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398566 chr9:38398559 . . 0 14 hm5C_associated_SNPs_8174 0 0 0 1 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10754 DeepMRMD:1;iRNA_m5C:0.999536712157815 10755 chr9 38398559 38398559 1 + G A rs192713382 38398567 + 38398547 38398587 41 GGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTAC GGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTAC < 41bp 1 0.444769167533972 1 0.101177215576172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398567 chr9:38398559 . . 0 13 hm5C_associated_SNPs_8175 0 0 0 1 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_10755 DeepMRMD:1;iRNA_m5C:0.999536712157815 10756 chr9 38398559 38398559 1 + G A rs192713382 38398569 + 38398549 38398589 41 TGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAG TGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.413914133112962 1 0.0522187650203705 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398569 chr9:38398559 . . 0 11 hm5C_associated_SNPs_8176 0 0 0 1 0 Cytosol 1 0.50023164412569 1 0.99953671174862 hm5C_site_10756 DeepMRMD:1;iRNA_m5C:0.99953671174862 10757 chr9 38398559 38398559 1 + G A rs192713382 38398570 + 38398550 38398590 41 GATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGG GATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.472540382616804 1 0.233792811632156 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398570 chr9:38398559 . . 0 10 hm5C_associated_SNPs_8177 0 0 0 1 0 Cytosol 1 0.500231644102749 1 0.999536711794502 hm5C_site_10757 DeepMRMD:1;iRNA_m5C:0.999536711794502 10758 chr9 38398559 38398559 1 + G A rs192713382 38398571 + 38398551 38398591 41 ATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGT ATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGT < 41bp 1 0.52389590802857 1 0.283527344465256 experiment 0.952208183942859 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ALDH1B1 ENSG00000137124 UTR3 Human protein_coding chr9:38398571 chr9:38398559 . . 0 9 hm5C_associated_SNPs_8178 0 0 0 1 0 Cytosol 1 0.500231643930043 1 0.999536712139915 hm5C_site_10758 DeepMRMD:1;iRNA_m5C:0.999536712139915 10759 chr9 71650752 71650752 1 + A G rs2481598 71650749 + 71650729 71650769 41 GGCCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGACCCT GGCCTCCTGGCGTCACCCAGCCCGGCCCAGGCCCAGACCCT < 41bp 1 0.662945895449392 1 0.304737359285355 experiment 0.674108209101216 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FXN ENSG00000165060 CDS Human protein_coding chr9:71650749 chr9:71650752 synonymous SNV . 0 24 hm5C_associated_SNPs_8179 2 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10759 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 10760 chr9 71650752 71650752 1 + A G rs2481598 71650750 + 71650730 71650770 41 GCCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGACCCTC GCCTCCTGGCGTCACCCAGCCCGGCCCAGGCCCAGACCCTC < 41bp 1 0.555280945655135 1 0.295556962490082 experiment 0.88943810868973 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FXN ENSG00000165060 CDS Human protein_coding chr9:71650750 chr9:71650752 synonymous SNV . 0 23 hm5C_associated_SNPs_8180 2 0 1 0 0 Cytosol 1 0.500231643359727 1 0.999536713280546 hm5C_site_10760 DeepMRMD:1;iRNA_m5C:0.999536713280546 not specified not specified 10761 chr9 71650766 71650766 1 + C A rs572324212 71650749 + 71650729 71650769 41 GGCCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGACCCT GGCCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGAACCT < 41bp 1 0.385506145018307 1 0.0978075861930847 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FXN ENSG00000165060 CDS Human protein_coding chr9:71650749 chr9:71650766 nonsynonymous SNV 0.001 2 38 hm5C_associated_SNPs_8182 0 0 1 0 1 Cytosol 1 0.500232901151103 1 0.999534197697795 hm5C_site_10761 DeepMRMD:1;iRNA_m5C:0.999534197697795 10762 chr9 71650766 71650766 1 + C A rs572324212 71650750 + 71650730 71650770 41 GCCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGACCCTC GCCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGAACCTC < 41bp 1 0.358412315813511 1 0.20536607503891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FXN ENSG00000165060 CDS Human protein_coding chr9:71650750 chr9:71650766 nonsynonymous SNV 0.001 2 37 hm5C_associated_SNPs_8183 0 0 1 0 1 Cytosol 1 0.50023164381531 1 0.999536712369381 hm5C_site_10762 DeepMRMD:1;iRNA_m5C:0.999536712369381 10763 chr9 71650766 71650766 1 + C A rs572324212 71650751 + 71650731 71650771 41 CCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGACCCTCA CCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGAACCTCA < 41bp 1 0.630475964210394 1 0.0533720552921295 experiment 0.739048071579212 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FXN ENSG00000165060 CDS Human protein_coding chr9:71650751 chr9:71650766 nonsynonymous SNV 0.001 2 36 hm5C_associated_SNPs_8184 0 0 1 0 1 Cytosol 1 0.500231643985507 1 0.999536712028986 hm5C_site_10763 DeepMRMD:1;iRNA_m5C:0.999536712028986 10764 chr9 71661335 71661335 1 + A G rs146284289 71661354 + 71661334 71661374 41 AATGTCAAAAAGCAGAGTGTCTATTTGATGAATTTGAGGAA AGTGTCAAAAAGCAGAGTGTCTATTTGATGAATTTGAGGAA < 41bp 1 0.218527530587677 1 0.0516341328620911 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FXN ENSG00000165060 CDS Human protein_coding chr9:71661354 chr9:71661335 nonsynonymous SNV 0.744 1 2 hm5C_associated_SNPs_8185 0 0 1 0 0 Cytosol 1 0.500232275165242 1 0.999535449669516 hm5C_site_10764 DeepMRMD:1;iRNA_m5C:0.999535449669516 10765 chr9 71661361 71661361 1 + A G rs59907886 71661354 + 71661334 71661374 41 AATGTCAAAAAGCAGAGTGTCTATTTGATGAATTTGAGGAA AATGTCAAAAAGCAGAGTGTCTATTTGGTGAATTTGAGGAA < 41bp 1 0.21956388169216 1 0.0685542523860931 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FXN ENSG00000165060 CDS Human protein_coding chr9:71661354 chr9:71661361 nonsynonymous SNV 0.005 0 28 hm5C_associated_SNPs_8186 1 0 1 0 0 Cytosol 1 0.50023251149064 1 0.99953497701872 hm5C_site_10765 DeepMRMD:1;iRNA_m5C:0.99953497701872 Cardiovascular phenotype Cardiovascular phenotype 10766 chr9 71866035 71866035 1 + G A rs201202451 71866051 + 71866031 71866071 41 TAATGAAACTCCTGGGGCATCTACCAAAGGTTATCCTCCTC TAATAAAACTCCTGGGGCATCTACCAAAGGTTATCCTCCTC < 41bp 1 0.210767837849868 1 0.345415085554123 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71866051 chr9:71866035 nonsynonymous SNV 0.040 0 5 hm5C_associated_SNPs_8187 0 0 0 0 1 Nucleus 1 0.500231643921305 1 0.999536712157389 hm5C_site_10766 DeepMRMD:1;iRNA_m5C:0.999536712157389 10767 chr9 72003132 72003132 1 + T C rs539191443 72003140 + 72003120 72003160 41 ACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTGAGAT ACTGGATCTGGCCGCAGTGACTCTGAGGAGAGGCTTGAGAT < 41bp 1 0.572763964918325 1 0.37565866112709 experiment 0.854472070163351 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:72003140 chr9:72003132 synonymous SNV . 0 13 hm5C_associated_SNPs_8188 0 0 0 0 1 cytosol 1 0.500231834532436 1 0.999536330935128 hm5C_site_10767 DeepMRMD:1;iRNA_m5C:0.999536330935128 10768 chr9 72913041 72913041 1 + A C rs116117325 72913039 + 72913019 72913059 41 GCCCCAGATTGATGCCATTACAAATGATCTGAGACGGATTC GCCCCAGATTGATGCCATTACACATGATCTGAGACGGATTC < 41bp 1 0.569272765158971 1 0.152897298336029 experiment 0.861454469682059 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC5 ENSG00000198887 CDS Human protein_coding chr9:72913039 chr9:72913041 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_8189 0 0 1 0 0 Cytosol 1 0.500231643928069 1 0.999536712143863 hm5C_site_10768 DeepMRMD:1;iRNA_m5C:0.999536712143863 10769 chr9 78505631 78505631 1 + G A rs547489704 78505630 + 78505610 78505650 41 CTGCTCGGAGCCGGAGGGAGCGCTGGGAGCGAGCAAGCGAG CTGCTCGGAGCCGGAGGGAGCACTGGGAGCGAGCAAGCGAG < 41bp 1 0.483561539546828 1 0.211446553468704 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCSK5 ENSG00000099139 UTR5 Human protein_coding chr9:78505630 chr9:78505631 . . 0 22 hm5C_associated_SNPs_8190 0 0 0 0 0 exosome 1 0.500231643920682 1 0.999536712158635 hm5C_site_10769 DeepMRMD:1;iRNA_m5C:0.999536712158635 10770 chr9 78506232 78506232 1 + G A rs140882057 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAAAATCGCCGGAGGCTTCCCGGAGGCCAACCGTAT < 41bp 1 0.074134100183739 1 0.0532965958118439 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506232 synonymous SNV . 0 18 hm5C_associated_SNPs_8191 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10770 DeepMRMD:1;iRNA_m5C:0.999536712157815 10771 chr9 78506249 78506249 1 + A G rs554390740 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAGCCGTAT < 41bp 1 0.0593545000381177 1 0.0332492589950562 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506249 nonsynonymous SNV 0.901 0 35 hm5C_associated_SNPs_8192 0 0 0 1 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10771 DeepMRMD:1;iRNA_m5C:0.999536712157815 10772 chr9 80880291 80880291 1 + T C rs200987172 80880295 + 80880275 80880315 41 TTCTCTCGACCAGGCTTGGGCAGCTTGCCACAATGGCTGGG TTCTCTCGACCAGGCTCGGGCAGCTTGCCACAATGGCTGGG < 41bp 1 0.367208707696666 1 0.349718540906906 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP78 ENSG00000148019 CDS Human protein_coding chr9:80880295 chr9:80880291 synonymous SNV . 0 17 hm5C_associated_SNPs_8193 0 0 0 0 1 Nucleus 1 0.500231643921155 1 0.999536712157691 hm5C_site_10772 DeepMRMD:1;iRNA_m5C:0.999536712157691 10773 chr9 80912092 80912092 1 + C G rs561420026 80912087 + 80912067 80912107 41 ACGCCAGCCGTTCACGCGTTCGGTCCTCCTTGGCTGACTCA ACGCCAGCCGTTCACGCGTTCGGTCGTCCTTGGCTGACTCA < 41bp 1 0.577437839289622 1 0.365625590085983 experiment 0.845124321420756 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSAT1 ENSG00000135069 UTR5 Human protein_coding chr9:80912087 chr9:80912092 . . 0 26 hm5C_associated_SNPs_8194 0 0 1 0 1 Ribosome 1 0.500231643906702 1 0.999536712186597 hm5C_site_10773 DeepMRMD:1;iRNA_m5C:0.999536712186597 10774 chr9 80942981 80942981 1 + C A rs148080212 80942983 + 80942963 80943003 41 TCAGTTGTCCAGTGGAGCCCCAAAATAGAAGCAAGATGAAT TCAGTTGTCCAGTGGAGCACCAAAATAGAAGCAAGATGAAT < 41bp 1 0.430619291529052 1 0.379784643650055 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80942983 chr9:80942981 nonsynonymous SNV 0.485 0 19 hm5C_associated_SNPs_8195 0 0 1 0 1 Ribosome 1 0.500231643921058 1 0.999536712157884 hm5C_site_10774 DeepMRMD:1;iRNA_m5C:0.999536712157884 10775 chr9 88556592 88556592 1 + G T rs374513708 88556610 + 88556590 88556630 41 AGGTTCTGCCTGGGTCCGGGCCGGCTCTGGCCCGGGAGAGG AGTTTCTGCCTGGGTCCGGGCCGGCTCTGGCCCGGGAGAGG < 41bp 1 0.284534290015085 1 0.298274785280228 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAA35 ENSG00000135040 UTR5 Human protein_coding chr9:88556610 chr9:88556592 . . 0 3 hm5C_associated_SNPs_8196 0 0 1 0 0 Cytosol 1 0.500232603823832 1 0.999534792352335 hm5C_site_10775 DeepMRMD:1;iRNA_m5C:0.999534792352335 10776 chr9 88556592 88556592 1 + G T rs374513708 88556611 + 88556591 88556631 41 GGTTCTGCCTGGGTCCGGGCCGGCTCTGGCCCGGGAGAGGT GTTTCTGCCTGGGTCCGGGCCGGCTCTGGCCCGGGAGAGGT < 41bp 1 0.519952454111933 1 0.277519226074219 experiment 0.960095091776134 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAA35 ENSG00000135040 UTR5 Human protein_coding chr9:88556611 chr9:88556592 . . 0 2 hm5C_associated_SNPs_8197 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_10776 DeepMRMD:1;iRNA_m5C:0.999536712157815 10777 chr9 88556601 88556601 1 + G C rs570919246 88556610 + 88556590 88556630 41 AGGTTCTGCCTGGGTCCGGGCCGGCTCTGGCCCGGGAGAGG AGGTTCTGCCTCGGTCCGGGCCGGCTCTGGCCCGGGAGAGG < 41bp 1 0.230020813148581 1 0.272160351276398 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAA35 ENSG00000135040 UTR5 Human protein_coding chr9:88556610 chr9:88556601 . . 0 12 hm5C_associated_SNPs_8198 0 0 1 0 0 Cytosol 1 0.500231650301575 1 0.999536699396851 hm5C_site_10777 DeepMRMD:1;iRNA_m5C:0.999536699396851 10778 chr9 88556601 88556601 1 + G C rs570919246 88556611 + 88556591 88556631 41 GGTTCTGCCTGGGTCCGGGCCGGCTCTGGCCCGGGAGAGGT GGTTCTGCCTCGGTCCGGGCCGGCTCTGGCCCGGGAGAGGT < 41bp 1 0.495117726486534 1 0.391763299703598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAA35 ENSG00000135040 UTR5 Human protein_coding chr9:88556611 chr9:88556601 . . 0 11 hm5C_associated_SNPs_8199 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10778 DeepMRMD:1;iRNA_m5C:0.999536712157815 10779 chr9 88556601 88556601 1 + G C rs570919246 88556621 + 88556601 88556641 41 GGGTCCGGGCCGGCTCTGGCCCGGGAGAGGTCCCAGCGAGC CGGTCCGGGCCGGCTCTGGCCCGGGAGAGGTCCCAGCGAGC < 41bp 1 0.62895270845429 1 0.907027125358582 experiment 0.74209458309142 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAA35 ENSG00000135040 UTR5 Human protein_coding chr9:88556621 chr9:88556601 . . 0 1 hm5C_associated_SNPs_8201 0 0 1 0 0 Cytosol 1 0.500231643921847 0.185945749282836 0.999536712156306 hm5C_site_10779 DeepMRMD:0.185945749282836;iRNA_m5C:0.999536712156306 10780 chr9 88556636 88556636 1 + G C rs180996664 88556621 + 88556601 88556641 41 GGGTCCGGGCCGGCTCTGGCCCGGGAGAGGTCCCAGCGAGC GGGTCCGGGCCGGCTCTGGCCCGGGAGAGGTCCCACCGAGC < 41bp 1 0.698184246361767 1 0.891559600830078 experiment 0.603631507276466 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAA35 ENSG00000135040 UTR5 Human protein_coding chr9:88556621 chr9:88556636 . . 0 36 hm5C_associated_SNPs_8203 0 0 1 0 0 Cytosol 1 0.5002183245137 0.216880798339844 0.9995633509726 hm5C_site_10780 DeepMRMD:0.216880798339844;iRNA_m5C:0.9995633509726 10781 chr9 88556636 88556636 1 + G C rs180996664 88556648 + 88556628 88556668 41 AGGTCCCAGCGAGCTCTGGCCAGATGAAGGGCTACCTTGAT AGGTCCCACCGAGCTCTGGCCAGATGAAGGGCTACCTTGAT < 41bp 1 0.392064549866601 1 0.831072688102722 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA35 ENSG00000135040 UTR5 Human protein_coding chr9:88556648 chr9:88556636 . . 0 9 hm5C_associated_SNPs_8204 0 0 1 0 0 Cytosol 1 0.500231643921093 0.337854623794556 0.999536712157814 hm5C_site_10781 DeepMRMD:0.337854623794556;iRNA_m5C:0.999536712157814 10782 chr9 90261453 90261453 1 + G A rs17053276 90261459 + 90261439 90261479 41 ATTAAAAGAGGCTCGAGAATCGATGTCCAGGATAAGGTCAT ATTAAAAGAGGCTCAAGAATCGATGTCCAGGATAAGGTCAT < 41bp 1 0.185666590145022 1 0.535209834575653 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90261459 chr9:90261453 synonymous SNV . 0 15 hm5C_associated_SNPs_8205 0 0 0 0 2 Ribosome 1 0.500231641307696 0.929580330848694 0.999536717384607 hm5C_site_10782 DeepMRMD:0.929580330848694;iRNA_m5C:0.999536717384607 10783 chr9 91033832 91033832 1 + A G rs141435006 91033844 + 91033824 91033864 41 TGCATGACACATAGCGAGTGCTCAGTGAACAGTCATTTTTC TGCATGACGCATAGCGAGTGCTCAGTGAACAGTCATTTTTC < 41bp 1 0.331967081146343 1 0.694426774978638 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPIN1 ENSG00000106723 UTR5 Human protein_coding chr9:91033844 chr9:91033832 . . 0 9 hm5C_associated_SNPs_8206 0 0 1 0 1 Cytosol 1 0.500226739705598 0.611146450042724 0.999546520588803 hm5C_site_10783 DeepMRMD:0.611146450042724;iRNA_m5C:0.999546520588803 10784 chr9 91083288 91083288 1 + G A rs61999324 91083287 + 91083267 91083307 41 TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCGATG TTTTTTTTTTTAATCCCCAGCAACATCTCGAATCAGCGATG < 41bp 1 0.29388644822274 1 0.407465875148773 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91083287 chr9:91083288 synonymous SNV . 0 22 hm5C_associated_SNPs_8207 0 0 1 0 1 Cytosol 1 0.500231643949396 1 0.999536712101208 hm5C_site_10784 DeepMRMD:1;iRNA_m5C:0.999536712101208 10785 chr9 91619185 91619185 1 + G A rs559975704 91619196 + 91619176 91619216 41 CGATAGCACGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGA CGATAGCACATGCCTGTAGTCCCAGCTACTCGGGAGGCTGA < 41bp 1 0.473803323156602 1 0.514352679252625 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control S1PR3 ENSG00000213694 UTR3 Human protein_coding chr9:91619196 chr9:91619185 . . 0 10 hm5C_associated_SNPs_8208 0 0 0 0 0 cytosol 1 0.500231643358971 0.97129464149475 0.999536713282057 hm5C_site_10785 DeepMRMD:0.97129464149475;iRNA_m5C:0.999536713282057 10786 chr9 91619185 91619185 1 + G A rs559975704 91619197 + 91619177 91619217 41 GATAGCACGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG GATAGCACATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG < 41bp 1 0.377031499872154 1 0.406549096107483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control S1PR3 ENSG00000213694 UTR3 Human protein_coding chr9:91619197 chr9:91619185 . . 0 9 hm5C_associated_SNPs_8209 0 0 0 0 0 cytosol 1 0.500231655475121 1 0.999536689049758 hm5C_site_10786 DeepMRMD:1;iRNA_m5C:0.999536689049758 10787 chr9 91619185 91619185 1 + G A rs559975704 91619198 + 91619178 91619218 41 ATAGCACGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG ATAGCACATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG < 41bp 1 0.623692119027026 1 0.751300454139709 experiment 0.752615761945947 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control S1PR3 ENSG00000213694 UTR3 Human protein_coding chr9:91619198 chr9:91619185 . . 0 8 hm5C_associated_SNPs_8210 0 0 0 0 0 cytosol 1 0.500231643868146 0.497399091720582 0.999536712263707 hm5C_site_10787 DeepMRMD:0.497399091720582;iRNA_m5C:0.999536712263707 10788 chr9 91619185 91619185 1 + G A rs559975704 91619201 + 91619181 91619221 41 GCACGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTG GCACATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTG < 41bp 1 0.387162042901311 1 0.120499968528748 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control S1PR3 ENSG00000213694 UTR3 Human protein_coding chr9:91619201 chr9:91619185 . . 0 5 hm5C_associated_SNPs_8211 0 0 0 0 0 cytosol 1 0.500231643921011 1 0.999536712157978 hm5C_site_10788 DeepMRMD:1;iRNA_m5C:0.999536712157978 10789 chr9 91933470 91933470 1 + G A rs193197080 91933472 + 91933452 91933492 41 TGCTGGCCTCCGTGACGCGGCCTCCTCCGCGCCTCGCGGCA TGCTGGCCTCCGTGACGCAGCCTCCTCCGCGCCTCGCGGCA < 41bp 1 0.12410166408207 1 0.071450799703598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SECISBP2 ENSG00000187742 UTR5 Human protein_coding chr9:91933472 chr9:91933470 . . 0 19 hm5C_associated_SNPs_8213 0 0 1 0 1 Cytosol 1 0.500231664512475 1 0.99953667097505 hm5C_site_10789 DeepMRMD:1;iRNA_m5C:0.99953667097505 10790 chr9 91933470 91933470 1 + G A rs193197080 91933475 + 91933455 91933495 41 TGGCCTCCGTGACGCGGCCTCCTCCGCGCCTCGCGGCATGG TGGCCTCCGTGACGCAGCCTCCTCCGCGCCTCGCGGCATGG < 41bp 1 0.167968184065459 1 0.0798941850662231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SECISBP2 ENSG00000187742 UTR5 Human protein_coding chr9:91933475 chr9:91933470 . . 0 16 hm5C_associated_SNPs_8214 0 0 1 0 1 Cytosol 1 0.500231643921038 1 0.999536712157924 hm5C_site_10790 DeepMRMD:1;iRNA_m5C:0.999536712157924 10791 chr9 91973860 91973860 1 + A T rs147264264 91973841 + 91973821 91973861 41 TGACAATGTAATTTGTGTAACTGTTGAATCTGGAAATTGAT TGACAATGTAATTTGTGTAACTGTTGAATCTGGAAATTGTT < 41bp 1 0.168115190122361 1 0.0533234179019928 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SECISBP2 ENSG00000187742 UTR3 Human protein_coding chr9:91973841 chr9:91973860 . . 0 40 hm5C_associated_SNPs_8218 0 0 1 2 0 Cytosol 1 0.500231643921496 1 0.999536712157008 hm5C_site_10791 DeepMRMD:1;iRNA_m5C:0.999536712157008 10792 chr9 95869981 95869981 1 + G A rs74414352 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CCGCCTGGTACAGGACACGCCTTTCCTGACAGGCCATGGGC < 41bp 1 0.045553154616748 1 0.0390989184379578 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95869981 synonymous SNV . 0 10 hm5C_associated_SNPs_8219 0 0 1 0 1 Ribosome 1 0.50023165299946 1 0.999536694001081 hm5C_site_10792 DeepMRMD:1;iRNA_m5C:0.999536694001081 10793 chr9 95870005 95870005 1 + C A rs34200537 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGACATGGGC < 41bp 1 0.0479532234239774 1 0.0639085471630096 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95870005 synonymous SNV . 0 34 hm5C_associated_SNPs_8220 0 0 1 0 2 Ribosome 1 0.500231635216933 1 0.999536729566133 hm5C_site_10793 DeepMRMD:1;iRNA_m5C:0.999536729566133 10794 chr9 97686330 97686330 1 + G A rs10993400 97686328 + 97686308 97686348 41 GGGAACCATCTCTGTGGGACCCGCCTCTGCCATGAAATTGC GGGAACCATCTCTGTGGGACCCACCTCTGCCATGAAATTGC < 41bp 1 0.0569147858453193 1 0.0612650513648987 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97686328 chr9:97686330 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_8222 0 0 1 0 1 Cytosol 1 0.500231141980832 1 0.999537716038335 hm5C_site_10794 DeepMRMD:1;iRNA_m5C:0.999537716038335 10795 chr9 97690733 97690733 1 + G A rs142764274 97690731 + 97690711 97690751 41 CCCCCTATGAGGCCCGGGAGCAGCAGGAGCTGAGGGCTTGT CCCCCTATGAGGCCCGGGAGCAACAGGAGCTGAGGGCTTGT < 41bp 1 0.668177186511832 1 0.417754769325256 experiment 0.663645626976336 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97690731 chr9:97690733 synonymous SNV . 0 23 hm5C_associated_SNPs_8223 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10795 DeepMRMD:1;iRNA_m5C:0.999536712157815 10796 chr9 98678698 98678698 1 + G C rs150328847 98678714 + 98678694 98678734 41 AGTTGCCTAAGAAGGAAGACCGGGTAAGAACCGCATTTGTA AGTTCCCTAAGAAGGAAGACCGGGTAAGAACCGCATTTGTA < 41bp 1 0.447351388638233 1 0.560996115207672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98678714 chr9:98678698 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_8224 0 0 0 0 1 Nucleus 1 0.500231643921092 0.878007769584656 0.999536712157815 hm5C_site_10796 DeepMRMD:0.878007769584656;iRNA_m5C:0.999536712157815 10797 chr9 100079386 100079386 1 + G A rs41281928 100079373 + 100079353 100079393 41 AACTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT AACTATGCCCTGCTGGGCAACCGGAAGGCTCTCACCCAGCT < 41bp 1 0.645468540744504 1 0.635444283485413 experiment 0.709062918510993 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100079373 chr9:100079386 nonsynonymous SNV 0.981 0 34 hm5C_associated_SNPs_8226 0 0 1 0 1 chromatin 1 0.500231542414424 0.729111433029174 0.999536915171152 hm5C_site_10797 DeepMRMD:0.729111433029174;iRNA_m5C:0.999536915171152 10798 chr9 100234756 100234756 1 + G A rs41281938 100234769 + 100234749 100234789 41 GTGACAAGTCACTAGAGGTTCACCTGCAGGTACCACTGTGA GTGACAAATCACTAGAGGTTCACCTGCAGGTACCACTGTGA < 41bp 1 0.352723977357813 1 0.0448298454284668 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TDRD7 ENSG00000196116 CDS Human protein_coding chr9:100234769 chr9:100234756 synonymous SNV . 0 8 hm5C_associated_SNPs_8228 1 0 0 0 1 Ribosome 1 0.500230153509881 1 0.999539692980239 hm5C_site_10798 DeepMRMD:1;iRNA_m5C:0.999539692980239 Congenital cataract Congenital cataract 10799 chr9 100760942 100760942 1 + C A rs535530800 100760956 + 100760936 100760976 41 AGATATCAGCACCTTGGAACCTTTGGTAAGTAACTGAGAAT AGATATAAGCACCTTGGAACCTTTGGTAAGTAACTGAGAAT < 41bp 1 0.20453868250132 1 0.271602302789688 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100760956 chr9:100760942 synonymous SNV . 0 7 hm5C_associated_SNPs_8230 0 0 1 0 1 Cytosol 1 0.500230162713725 1 0.999539674572549 hm5C_site_10799 DeepMRMD:1;iRNA_m5C:0.999539674572549 10800 chr9 100773572 100773572 1 + C T rs553733827 100773578 + 100773558 100773598 41 GAAGATGAGGAAGACGAGGACGATGAGGATGGTGAAGAAGA GAAGATGAGGAAGATGAGGACGATGAGGATGGTGAAGAAGA < 41bp 1 0.257189820415434 1 0.155739456415176 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773578 chr9:100773572 synonymous SNV . 0 15 hm5C_associated_SNPs_8232 0 0 1 0 2 Cytosol 1 0.500231643944268 1 0.999536712111463 hm5C_site_10800 DeepMRMD:1;iRNA_m5C:0.999536712111463 10801 chr9 100773575 100773575 1 + G A rs61757703 100773572 + 100773552 100773592 41 GAAGGAGAAGATGAGGAAGACGAGGACGATGAGGATGGTGA GAAGGAGAAGATGAGGAAGACGAAGACGATGAGGATGGTGA < 41bp 1 0.396575384353009 1 0.42527186870575 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773572 chr9:100773575 synonymous SNV . 0 24 hm5C_associated_SNPs_8233 0 0 1 0 2 Cytosol 1 0.50023164359985 1 0.9995367128003 hm5C_site_10801 DeepMRMD:1;iRNA_m5C:0.9995367128003 10802 chr9 100773575 100773575 1 + G A rs61757703 100773578 + 100773558 100773598 41 GAAGATGAGGAAGACGAGGACGATGAGGATGGTGAAGAAGA GAAGATGAGGAAGACGAAGACGATGAGGATGGTGAAGAAGA < 41bp 1 0.355292775135932 1 0.187925457954407 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773578 chr9:100773575 synonymous SNV . 0 18 hm5C_associated_SNPs_8234 0 0 1 0 2 Cytosol 1 0.500231644101929 1 0.999536711796142 hm5C_site_10802 DeepMRMD:1;iRNA_m5C:0.999536711796142 10803 chr9 100773578 100773578 1 + C T rs35618988 100773572 + 100773552 100773592 41 GAAGGAGAAGATGAGGAAGACGAGGACGATGAGGATGGTGA GAAGGAGAAGATGAGGAAGACGAGGATGATGAGGATGGTGA < 41bp 1 0.692143841301266 1 0.360662162303925 experiment 0.615712317397467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773572 chr9:100773578 synonymous SNV . 0 27 hm5C_associated_SNPs_8235 0 0 1 0 2 Cytosol 1 0.500152173783574 1 0.999695652432852 hm5C_site_10803 DeepMRMD:1;iRNA_m5C:0.999695652432852 10804 chr9 101765841 101765841 1 + C T rs10988532 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCGGGGGACCAACCCTCTCTATGTCCATGGAGAACCCAG < 41bp 1 0.276308706176237 1 0.0448741316795349 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765841 nonsynonymous SNV 0.006 3 30 hm5C_associated_SNPs_8236 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10804 DeepMRMD:1;iRNA_m5C:0.999536712157815 10805 chr9 101778346 101778346 1 + C A rs35529307 101778357 + 101778337 101778377 41 GCCCTCCCCCTGATGGGCCACCGCTGCCCCTGCCCACAGTG GCCCTCCCCATGATGGGCCACCGCTGCCCCTGCCCACAGTG < 41bp 1 0.143539307369267 1 0.0660971105098724 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101778357 chr9:101778346 nonsynonymous SNV 0.011 3 10 hm5C_associated_SNPs_8237 0 0 0 0 1 Endoplasmic reticulum 1 0.500226387925267 1 0.999547224149467 hm5C_site_10805 DeepMRMD:1;iRNA_m5C:0.999547224149467 10806 chr9 101915035 101915035 1 + T C rs146582850 101915030 + 101915010 101915050 41 CCAAATAATGGTTCTGTTAACACTTTGGCAGAAAATGCCAG CCAAATAATGGTTCTGTTAACACTTCGGCAGAAAATGCCAG < 41bp 1 0.373793652414441 1 0.141767382621765 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGFBR1 ENSG00000106799 UTR3 Human protein_coding chr9:101915030 chr9:101915035 . . 0 26 hm5C_associated_SNPs_8238 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_10806 DeepMRMD:1;iRNA_m5C:0.999536712157818 10807 chr9 103002466 103002466 1 + A G rs41312220 103002451 + 103002431 103002471 41 CGTGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAA CGTGGTTGATGTCTTGACCTCATATGAAAGCTGCAGTATAA < 41bp 1 0.157189315797049 1 0.44045814871788 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103002451 chr9:103002466 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_8239 2 0 0 0 1 chromatin 1 0.500231643909321 1 0.999536712181359 hm5C_site_10807 DeepMRMD:1;iRNA_m5C:0.999536712181359 not specified not specified 10808 chr9 103008904 103008904 1 + G A rs116438342 103008902 + 103008882 103008922 41 TCAAGTTTTCTTACAGGAAACGGTTAAAGTGTTTTTAAAAC TCAAGTTTTCTTACAGGAAACGATTAAAGTGTTTTTAAAAC < 41bp 1 0.0591701253092929 1 0.260228753089905 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103008902 chr9:103008904 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_8240 1 0 0 0 2 chromatin 1 0.500231643875223 1 0.999536712249553 hm5C_site_10808 DeepMRMD:1;iRNA_m5C:0.999536712249553 not specified not specified 10809 chr9 104307062 104307062 1 + G A rs531422157 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTGATAGTAGAGGAAGCAGTGCAGGAGCTGAACTCTT < 41bp 1 0.257035846012885 1 0.638039112091064 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307062 synonymous SNV . 0 13 hm5C_associated_SNPs_8241 0 0 1 0 1 nucleus 1 0.500231643921092 0.723921775817872 0.999536712157815 hm5C_site_10809 DeepMRMD:0.723921775817872;iRNA_m5C:0.999536712157815 10810 chr9 106901506 106901506 1 + A G rs16923746 106901519 + 106901499 106901539 41 CTACAGTAGCCAGATTTACTCAATGTCAAAATGGAAAGATT CTACAGTGGCCAGATTTACTCAATGTCAAAATGGAAAGATT < 41bp 1 0.323431370757992 1 0.660120189189911 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106901519 chr9:106901506 synonymous SNV . 0 8 hm5C_associated_SNPs_8242 0 0 1 0 1 Cytosol 1 0.500231682757878 0.679759621620178 0.999536634484244 hm5C_site_10810 DeepMRMD:0.679759621620178;iRNA_m5C:0.999536634484244 10811 chr9 106901521 106901521 1 + A G rs73665520 106901519 + 106901499 106901539 41 CTACAGTAGCCAGATTTACTCAATGTCAAAATGGAAAGATT CTACAGTAGCCAGATTTACTCAGTGTCAAAATGGAAAGATT < 41bp 1 0.406227165805164 1 0.860399127006531 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106901519 chr9:106901521 synonymous SNV . 0 23 hm5C_associated_SNPs_8243 0 0 1 0 0 Cytosol 1 0.500231643714333 0.279201745986938 0.999536712571334 hm5C_site_10811 DeepMRMD:0.279201745986938;iRNA_m5C:0.999536712571334 10812 chr9 107515214 107515214 1 + G A rs2274870 107515213 + 107515193 107515233 41 TTGCTCATCGAACTGAAGTTCGGAAAGCCTTGGCCAAAGAT TTGCTCATCGAACTGAAGTTCAGAAAGCCTTGGCCAAAGAT < 41bp 1 0.692597290582052 1 0.797424554824829 experiment 0.614805418835896 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107515213 chr9:107515214 nonsynonymous SNV 0.927 1 22 hm5C_associated_SNPs_8245 0 1 1 0 1 Ribosome 1 0.5002316439206 0.405150890350342 0.9995367121588 hm5C_site_10812 DeepMRMD:0.405150890350342;iRNA_m5C:0.9995367121588 10813 chr9 108536388 108536388 1 + A C rs73522022 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCCAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.252209551798811 1 0.175128102302551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536388 . . 0 3 hm5C_associated_SNPs_8246 0 0 1 2 0 Ribosome 1 0.500231643695063 1 0.999536712609874 hm5C_site_10813 DeepMRMD:1;iRNA_m5C:0.999536712609874 10814 chr9 108536392 108536392 1 + A T rs184855300 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.177568355081213 1 0.105875313282013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536392 . . 0 7 hm5C_associated_SNPs_8247 0 0 1 14 0 Ribosome 1 0.500231643927403 1 0.999536712145193 hm5C_site_10814 DeepMRMD:1;iRNA_m5C:0.999536712145193 10815 chr9 108536392 108536392 1 + A T rs184855300 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AATTTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.152427217203286 1 0.0514187514781952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536392 . . 0 3 hm5C_associated_SNPs_8248 0 0 1 14 0 Ribosome 1 0.500231805033079 1 0.999536389933841 hm5C_site_10815 DeepMRMD:1;iRNA_m5C:0.999536389933841 10816 chr9 108536396 108536396 1 + T A rs141597117 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTATTTTCTTATCTACCTGTTATATTGTGCTAA < 41bp 1 0.259037105655647 1 0.10272553563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536396 . . 0 11 hm5C_associated_SNPs_8249 0 0 1 13 0 Ribosome 1 0.500231642762745 1 0.99953671447451 hm5C_site_10816 DeepMRMD:1;iRNA_m5C:0.99953671447451 10817 chr9 108536396 108536396 1 + T A rs141597117 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTATTTTCTTATCTACCTGTTATATTGTGCTAATTTT < 41bp 1 0.17056811451831 1 0.0531870126724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536396 . . 0 7 hm5C_associated_SNPs_8250 0 0 1 13 0 Ribosome 1 0.500231643395813 1 0.999536713208373 hm5C_site_10817 DeepMRMD:1;iRNA_m5C:0.999536713208373 10818 chr9 108536420 108536420 1 + G T rs146363879 108536406 + 108536386 108536426 41 CCAAAAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAA CCAAAAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAA < 41bp 1 0.249328689360875 1 0.299383401870728 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536406 chr9:108536420 . . 0 35 hm5C_associated_SNPs_8251 0 0 1 8 0 Ribosome 1 0.500231643921199 1 0.999536712157602 hm5C_site_10818 DeepMRMD:1;iRNA_m5C:0.999536712157602 10819 chr9 108536420 108536420 1 + G T rs146363879 108536410 + 108536390 108536430 41 AAATTTTTTTTCTTATCTACCTGTTATATTGTGCTAATTTT AAATTTTTTTTCTTATCTACCTGTTATATTTTGCTAATTTT < 41bp 1 0.108449496785357 1 0.0773288607597351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38B ENSG00000095209 UTR3 Human protein_coding chr9:108536410 chr9:108536420 . . 0 31 hm5C_associated_SNPs_8252 0 0 1 8 0 Ribosome 1 0.500231946078097 1 0.999536107843807 hm5C_site_10819 DeepMRMD:1;iRNA_m5C:0.999536107843807 10820 chr9 110045787 110045787 1 + C T rs182035375 110045800 + 110045780 110045820 41 CCCCCACCCCCACCGCCTTCCTCCCCAGAGCGCGAGGAGCG CCCCCACTCCCACCGCCTTCCTCCCCAGAGCGCGAGGAGCG < 41bp 1 0.529009125350689 1 0.231927067041397 experiment 0.941981749298622 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RAD23B ENSG00000119318 UTR5 Human protein_coding chr9:110045800 chr9:110045787 . . 0 8 hm5C_associated_SNPs_8253 0 0 1 0 0 Ribosome 1 0.500231644013957 1 0.999536711972086 hm5C_site_10820 DeepMRMD:1;iRNA_m5C:0.999536711972086 10821 chr9 110086256 110086256 1 + G A rs61758755 110086266 + 110086246 110086286 41 TGCTTCCAGCGTTACTACAGCAGATAGGTCGAGAGAATCCT TGCTTCCAGCATTACTACAGCAGATAGGTCGAGAGAATCCT < 41bp 1 0.222475694068419 1 0.175016164779663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110086266 chr9:110086256 synonymous SNV . 0 11 hm5C_associated_SNPs_8255 0 0 1 0 2 Ribosome 1 0.500231634365221 1 0.999536731269557 hm5C_site_10821 DeepMRMD:1;iRNA_m5C:0.999536731269557 10822 chr9 116023979 116023979 1 + A C rs41280225 116023959 + 116023939 116023979 41 GCTTTAGCGTGCATCAGAATCACCTGTAGGGCTTGTTAAAA GCTTTAGCGTGCATCAGAATCACCTGTAGGGCTTGTTAAAC < 41bp 1 0.615426805972389 1 0.276489675045013 experiment 0.769146388055223 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC31A1 ENSG00000136868 UTR3 Human protein_coding chr9:116023959 chr9:116023979 . . 0 41 hm5C_associated_SNPs_8261 0 0 1 0 0 Ribosome 1 0.500231643919822 1 0.999536712160357 hm5C_site_10822 DeepMRMD:1;iRNA_m5C:0.999536712160357 10823 chr9 116750631 116750631 1 + C G rs149113651 116750645 + 116750625 116750665 41 GAGCACCAAGGTGGAGGGCCCAGAGCCAGTGCCAGCCGAGG GAGCACGAAGGTGGAGGGCCCAGAGCCAGTGCCAGCCGAGG < 41bp 1 0.418460976846577 1 0.389988660812378 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116750645 chr9:116750631 synonymous SNV . 0 7 hm5C_associated_SNPs_8263 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10823 DeepMRMD:1;iRNA_m5C:0.999536712157815 Multiple complex diseases 10824 chr9 116764917 116764917 1 + C T rs527710113 116764935 + 116764915 116764955 41 ACCTCAGGGGAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT ACTTCAGGGGAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT < 41bp 1 0.30174731712749 1 0.628002643585205 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116764935 chr9:116764917 synonymous SNV . 0 3 hm5C_associated_SNPs_8264 0 0 0 0 2 Cytosol 1 0.500231643921092 0.74399471282959 0.999536712157815 hm5C_site_10824 DeepMRMD:0.74399471282959;iRNA_m5C:0.999536712157815 10825 chr9 116971981 116971981 1 + C T rs138060609 116971985 + 116971965 116972005 41 GGCTCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAA GGCTCCCAGGGCTCTTTGGCCTGCCAGGGTCTGATGGAGAA < 41bp 1 0.139974672595362 1 0.102886170148849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971985 chr9:116971981 synonymous SNV . 0 17 hm5C_associated_SNPs_8265 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10825 DeepMRMD:1;iRNA_m5C:0.999536712157815 10826 chr9 116971981 116971981 1 + C T rs138060609 116971988 + 116971968 116972008 41 TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGA TCCCAGGGCTCTTTGGCCTGCCAGGGTCTGATGGAGAACGA < 41bp 1 0.146709993153774 1 0.63696426153183 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971988 chr9:116971981 synonymous SNV . 0 14 hm5C_associated_SNPs_8266 0 0 1 0 2 Nucleus 1 0.500231642622694 0.72607147693634 0.999536714754613 hm5C_site_10826 DeepMRMD:0.72607147693634;iRNA_m5C:0.999536714754613 10827 chr9 116971981 116971981 1 + C T rs138060609 116971989 + 116971969 116972009 41 CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGAG CCCAGGGCTCTTTGGCCTGCCAGGGTCTGATGGAGAACGAG < 41bp 1 0.332149490353264 1 0.725806295871735 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971989 chr9:116971981 synonymous SNV . 0 13 hm5C_associated_SNPs_8267 0 0 1 0 2 Nucleus 1 0.500231643921116 0.54838740825653 0.999536712157768 hm5C_site_10827 DeepMRMD:0.54838740825653;iRNA_m5C:0.999536712157768 10828 chr9 117063984 117063984 1 + G A rs565852420 117063993 + 117063973 117064013 41 CCCCAGAGGGCGGCCCGGCCCCCCGGTAGGTAACTGAGTGC CCCCAGAGGGCAGCCCGGCCCCCCGGTAGGTAACTGAGTGC < 41bp 1 0.344596469207929 1 0.369138598442078 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117063993 chr9:117063984 nonsynonymous SNV 0.162 1 12 hm5C_associated_SNPs_8268 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10828 DeepMRMD:1;iRNA_m5C:0.999536712157815 10829 chr9 117400957 117400957 1 + C T rs34024960 117400977 + 117400957 117400997 41 CACTCATGCAGACTGAGCTTCATCAGCTTGTTCCTGAGGCT TACTCATGCAGACTGAGCTTCATCAGCTTGTTCCTGAGGCT < 41bp 1 0.353163337556325 1 0.130630165338516 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117400977 chr9:117400957 nonsynonymous SNV 0.530 0 1 hm5C_associated_SNPs_8269 0 0 1 0 1 unknown 1 0.50023307278855 1 0.9995338544229 hm5C_site_10829 DeepMRMD:1;iRNA_m5C:0.9995338544229 10830 chr9 117407274 117407274 1 + C T rs191223130 117407276 + 117407256 117407296 41 TTAGTAGAGATGGGGTTTCGCCATGTTGGCCAAGCTGGTCT TTAGTAGAGATGGGGTTTTGCCATGTTGGCCAAGCTGGTCT < 41bp 1 0.411487852132325 1 0.329421520233154 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM268 ENSG00000157693 UTR3 Human protein_coding chr9:117407276 chr9:117407274 . . 0 19 hm5C_associated_SNPs_8270 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_10830 DeepMRMD:1;iRNA_m5C:0.999536712157815 10831 chr9 117407285 117407285 1 + C T rs141547701 117407276 + 117407256 117407296 41 TTAGTAGAGATGGGGTTTCGCCATGTTGGCCAAGCTGGTCT TTAGTAGAGATGGGGTTTCGCCATGTTGGTCAAGCTGGTCT < 41bp 1 0.368886806724507 1 0.386798292398453 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM268 ENSG00000157693 UTR3 Human protein_coding chr9:117407276 chr9:117407285 . . 0 30 hm5C_associated_SNPs_8271 0 0 0 0 0 unknown 1 0.500231643947589 1 0.999536712104822 hm5C_site_10831 DeepMRMD:1;iRNA_m5C:0.999536712104822 10832 chr9 124062241 124062241 1 + G T rs369326886 124062243 + 124062223 124062263 41 CACTGCGTCGCGGGGGGCGTCCCAGGCGGGGGCGCCCCAGG CACTGCGTCGCGGGGGGCTTCCCAGGCGGGGGCGCCCCAGG < 41bp 1 0.597751359188868 1 0.69160521030426 experiment 0.804497281622263 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062243 chr9:124062241 synonymous SNV . 0 19 hm5C_associated_SNPs_8272 0 0 1 0 1 Cytosol 1 0.500231643921092 0.61678957939148 0.999536712157815 hm5C_site_10832 DeepMRMD:0.61678957939148;iRNA_m5C:0.999536712157815 10833 chr9 124062241 124062241 1 + G T rs369326886 124062255 + 124062235 124062275 41 GGGGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCG GGGGGCTTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCG < 41bp 1 0.439450980889205 1 0.574721455574036 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062255 chr9:124062241 synonymous SNV . 0 7 hm5C_associated_SNPs_8274 0 0 1 0 1 Cytosol 1 0.500231700673191 0.850557088851928 0.999536598653618 hm5C_site_10833 DeepMRMD:0.850557088851928;iRNA_m5C:0.999536598653618 10834 chr9 124062241 124062241 1 + G T rs369326886 124062257 + 124062237 124062277 41 GGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAG GGGCTTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAG < 41bp 1 0.635227019601187 1 0.635010123252869 experiment 0.729545960797626 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062257 chr9:124062241 synonymous SNV . 0 5 hm5C_associated_SNPs_8275 0 0 1 0 1 Cytosol 1 0.500231643921092 0.729979753494262 0.999536712157815 hm5C_site_10834 DeepMRMD:0.729979753494262;iRNA_m5C:0.999536712157815 10835 chr9 124062241 124062241 1 + G T rs369326886 124062258 + 124062238 124062278 41 GGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAGG GGCTTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAGG < 41bp 1 0.49934936069895 1 0.71086585521698 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062258 chr9:124062241 synonymous SNV . 0 4 hm5C_associated_SNPs_8276 0 0 1 0 1 Cytosol 1 0.500231644175034 0.57826828956604 0.999536711649932 hm5C_site_10835 DeepMRMD:0.57826828956604;iRNA_m5C:0.999536711649932 10836 chr9 125772713 125772713 1 + G A rs78302239 125772700 + 125772680 125772720 41 TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGAGGAAAA TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGAAGGAAAA < 41bp 1 0.572791085587781 1 0.455893605947495 experiment 0.854417828824438 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125772700 chr9:125772713 synonymous SNV . 0 34 hm5C_associated_SNPs_8277 0 0 1 0 2 Nucleus 1 0.500231838661229 1 0.999536322677543 hm5C_site_10836 DeepMRMD:1;iRNA_m5C:0.999536322677543 10837 chr9 125772714 125772714 1 + A C rs137893790 125772700 + 125772680 125772720 41 TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGAGGAAAA TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGCGGAAAA < 41bp 1 0.648145798362764 1 0.595414459705353 experiment 0.703708403274472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125772700 chr9:125772714 synonymous SNV . 0 35 hm5C_associated_SNPs_8278 0 0 1 0 2 Nucleus 1 0.500231649618719 0.809171080589294 0.999536700762562 hm5C_site_10837 DeepMRMD:0.809171080589294;iRNA_m5C:0.999536700762562 10838 chr9 127101899 127101899 1 + C A rs543844372 127101884 + 127101864 127101904 41 TACATGTCACCGGAGAGGATCCATGAGAACGGCTACAACTT TACATGTCACCGGAGAGGATCCATGAGAACGGCTAAAACTT < 41bp 1 0.0897403757095981 1 0.0377092957496643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NEK6 ENSG00000119408 CDS Human protein_coding chr9:127101884 chr9:127101899 stopgain 0.999 1 36 hm5C_associated_SNPs_8279 0 0 1 0 2 Cytosol 1 0.500231643920183 1 0.999536712159634 hm5C_site_10838 DeepMRMD:1;iRNA_m5C:0.999536712159634 10839 chr9 127561691 127561691 1 + G A rs115504825 127561684 + 127561664 127561704 41 TGCTGGGCATCAAGAAGGAGCTGTCCCGCCTGGGCCTCCAG TGCTGGGCATCAAGAAGGAGCTGTCCCACCTGGGCCTCCAG < 41bp 1 0.0747501771540122 1 0.31799304485321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OLFML2A ENSG00000185585 CDS Human protein_coding chr9:127561684 chr9:127561691 nonsynonymous SNV 0.952 2 28 hm5C_associated_SNPs_8280 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10839 DeepMRMD:1;iRNA_m5C:0.999536712157815 10840 chr9 127982837 127982837 1 + G A rs78598675 127982849 + 127982829 127982869 41 TGGACCACGCCAGAAGTGACCAGCCCCCCACCATCCCCAAG TGGACCACACCAGAAGTGACCAGCCCCCCACCATCCCCAAG < 41bp 1 0.55788944807958 1 0.502528011798859 experiment 0.884221103840841 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982849 chr9:127982837 nonsynonymous SNV 0.088 1 9 hm5C_associated_SNPs_8281 0 0 1 0 1 Cytosol 1 0.500231644006486 0.994943976402282 0.999536711987028 hm5C_site_10840 DeepMRMD:0.994943976402282;iRNA_m5C:0.999536711987028 10841 chr9 127982839 127982839 1 + C A rs74769898 127982849 + 127982829 127982869 41 TGGACCACGCCAGAAGTGACCAGCCCCCCACCATCCCCAAG TGGACCACGCAAGAAGTGACCAGCCCCCCACCATCCCCAAG < 41bp 1 0.639279125975109 1 0.615866243839264 experiment 0.721441748049781 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982849 chr9:127982839 nonsynonymous SNV 0.638 3 11 hm5C_associated_SNPs_8282 0 0 1 0 1 Cytosol 1 0.50023164392431 0.768267512321472 0.99953671215138 hm5C_site_10841 DeepMRMD:0.768267512321472;iRNA_m5C:0.99953671215138 10842 chr9 129596353 129596353 1 + A C rs183443767 129596364 + 129596344 129596384 41 CAATTAAAAAAATCTAATTCCTCAAATTTGTGTGTTCCAGT CAATTAAAACAATCTAATTCCTCAAATTTGTGTGTTCCAGT < 41bp 1 0.367997927289527 1 0.777044534683228 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB43 ENSG00000169155 UTR3 Human protein_coding chr9:129596364 chr9:129596353 . . 0 10 hm5C_associated_SNPs_8283 0 0 1 0 0 Cytosol 1 0.500230459604562 0.445910930633544 0.999539080790875 hm5C_site_10842 DeepMRMD:0.445910930633544;iRNA_m5C:0.999539080790875 10843 chr9 129983330 129983330 1 + G A rs540270018 129983339 + 129983319 129983359 41 TAGATTTTGTTGGCAAAAGCCTTATAGAAGCAGTAAGAGGC TAGATTTTGTTAGCAAAAGCCTTATAGAAGCAGTAAGAGGC < 41bp 1 0.0368932967052591 1 0.498024195432663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RALGPS1 ENSG00000228487 ncRNA_intronic Human antisense chr9:129983339 chr9:129983330 . . 0 12 hm5C_associated_SNPs_8284 0 0 0 0 0 Nucleus 1 0.500231789557178 1 0.999536420885645 hm5C_site_10843 DeepMRMD:1;iRNA_m5C:0.999536420885645 10844 chr9 130374630 130374630 1 + T G rs562125563 130374610 + 130374590 130374630 41 TGCGGCTGGCCCAGCGCGCCCACCTGAGGAGGCGGCGGGGT TGCGGCTGGCCCAGCGCGCCCACCTGAGGAGGCGGCGGGGG < 41bp 1 0.650158360752457 1 0.15533173084259 experiment 0.699683278495085 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP1 ENSG00000136854 UTR5 Human protein_coding chr9:130374610 chr9:130374630 . . 0 41 hm5C_associated_SNPs_8285 0 0 1 0 0 Cytosol 1 0.500231617878814 1 0.999536764242371 hm5C_site_10844 DeepMRMD:1;iRNA_m5C:0.999536764242371 10845 chr9 130374630 130374630 1 + T G rs562125563 130374612 + 130374592 130374632 41 CGGCTGGCCCAGCGCGCCCACCTGAGGAGGCGGCGGGGTCC CGGCTGGCCCAGCGCGCCCACCTGAGGAGGCGGCGGGGGCC < 41bp 1 0.657139850293505 1 0.25261127948761 experiment 0.685720299412991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP1 ENSG00000136854 UTR5 Human protein_coding chr9:130374612 chr9:130374630 . . 0 39 hm5C_associated_SNPs_8286 0 0 1 0 0 Cytosol 1 0.500231643929365 1 0.999536712141269 hm5C_site_10845 DeepMRMD:1;iRNA_m5C:0.999536712141269 10846 chr9 130551711 130551711 1 + C T rs3217749 130551725 + 130551705 130551745 41 CATGTTCGAGTACTTGGCACCACCGCGCCGGAAGGGCAGCC CATGTTTGAGTACTTGGCACCACCGCGCCGGAAGGGCAGCC < 41bp 1 0.505839038486018 1 0.425763636827469 experiment 0.988321923027965 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK9 ENSG00000136807 CDS Human protein_coding chr9:130551725 chr9:130551711 synonymous SNV . 0 7 hm5C_associated_SNPs_8288 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157811 hm5C_site_10846 DeepMRMD:1;iRNA_m5C:0.999536712157811 10847 chr9 130551744 130551744 1 + C T rs145338923 130551725 + 130551705 130551745 41 CATGTTCGAGTACTTGGCACCACCGCGCCGGAAGGGCAGCC CATGTTCGAGTACTTGGCACCACCGCGCCGGAAGGGCAGTC < 41bp 1 0.556457505474612 1 0.394602954387665 experiment 0.887084989050777 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK9 ENSG00000136807 CDS Human protein_coding chr9:130551725 chr9:130551744 synonymous SNV . 0 40 hm5C_associated_SNPs_8289 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643927564 1 0.999536712144872 hm5C_site_10847 DeepMRMD:1;iRNA_m5C:0.999536712144872 10848 chr9 130565267 130565267 1 + A C rs10760502 130565266 + 130565246 130565286 41 GCAGCGGCGTCTGCGCGCGGCATAACGACCCAGGTCGCGGC GCAGCGGCGTCTGCGCGCGGCCTAACGACCCAGGTCGCGGC < 41bp 1 0.132537686117874 1 0.0555700659751892 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130565266 chr9:130565267 nonsynonymous SNV 0.020 0 22 hm5C_associated_SNPs_8290 0 0 1 0 1 Cytosol 1 0.500231643917604 1 0.999536712164792 hm5C_site_10848 DeepMRMD:1;iRNA_m5C:0.999536712164792 10849 chr9 130575582 130575582 1 + G A rs115478065 130575587 + 130575567 130575607 41 GCCCGGACCTCTGGAGTGCCCCCAGCCCAGAGCCCGGTGGG GCCCGGACCTCTGGAATGCCCCCAGCCCAGAGCCCGGTGGG < 41bp 1 0.55738817335083 1 0.370819449424744 experiment 0.885223653298341 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130575587 chr9:130575582 nonsynonymous SNV 0.020 0 16 hm5C_associated_SNPs_8291 0 0 0 0 0 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_10849 DeepMRMD:1;iRNA_m5C:0.99953671215782 10850 chr9 130575585 130575585 1 + C T rs17855900 130575587 + 130575567 130575607 41 GCCCGGACCTCTGGAGTGCCCCCAGCCCAGAGCCCGGTGGG GCCCGGACCTCTGGAGTGTCCCCAGCCCAGAGCCCGGTGGG < 41bp 1 0.558722179189128 1 0.250948786735535 experiment 0.882555641621744 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130575587 chr9:130575585 nonsynonymous SNV 0.001 0 19 hm5C_associated_SNPs_8292 0 0 0 0 0 Cytosol 1 0.500229489265027 1 0.999541021469947 hm5C_site_10850 DeepMRMD:1;iRNA_m5C:0.999541021469947 10851 chr9 130860814 130860814 1 + G C rs116892997 130860819 + 130860799 130860839 41 CTTGCTCCCGGTGGTGAGGGCAGTGGAGCACCCAGCAGGCC CTTGCTCCCGGTGGTCAGGGCAGTGGAGCACCCAGCAGGCC < 41bp 1 0.351670368791117 1 0.387422382831573 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC25A25 ENSG00000148339 UTR5 Human protein_coding chr9:130860819 chr9:130860814 . . 0 16 hm5C_associated_SNPs_8293 0 0 1 0 0 Ribosome 1 0.500231643882808 1 0.999536712234383 hm5C_site_10851 DeepMRMD:1;iRNA_m5C:0.999536712234383 10852 chr9 130860837 130860837 1 + G T rs139240119 130860819 + 130860799 130860839 41 CTTGCTCCCGGTGGTGAGGGCAGTGGAGCACCCAGCAGGCC CTTGCTCCCGGTGGTGAGGGCAGTGGAGCACCCAGCAGTCC < 41bp 1 0.429308620534013 1 0.351096838712692 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC25A25 ENSG00000148339 UTR5 Human protein_coding chr9:130860819 chr9:130860837 . . 0 39 hm5C_associated_SNPs_8294 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_10852 DeepMRMD:1;iRNA_m5C:0.999536712157815 10853 chr9 131085113 131085113 1 + C G rs144235048 131085127 + 131085107 131085147 41 ACCCGCCCATCCTCCGCGGACGCCCGCTGCCATGGCGACTC ACCCGCGCATCCTCCGCGGACGCCCGCTGCCATGGCGACTC < 41bp 1 0.519358308894659 1 0.0413115322589874 experiment 0.961283382210683 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COQ4 ENSG00000167113 UTR5 Human protein_coding chr9:131085127 chr9:131085113 . . 0 7 hm5C_associated_SNPs_8295 0 0 1 0 0 Ribosome 1 0.500231592395831 1 0.999536815208337 hm5C_site_10853 DeepMRMD:1;iRNA_m5C:0.999536815208337 10854 chr9 131085118 131085118 1 + C G rs372363685 131085127 + 131085107 131085147 41 ACCCGCCCATCCTCCGCGGACGCCCGCTGCCATGGCGACTC ACCCGCCCATCGTCCGCGGACGCCCGCTGCCATGGCGACTC < 41bp 1 0.515344129491876 1 0.0580699443817139 experiment 0.969311741016248 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COQ4 ENSG00000167113 UTR5 Human protein_coding chr9:131085127 chr9:131085118 . . 0 12 hm5C_associated_SNPs_8296 1 0 1 0 0 Ribosome 1 0.500232139400279 1 0.999535721199443 hm5C_site_10854 DeepMRMD:1;iRNA_m5C:0.999535721199443 not specified not specified 10855 chr9 131107634 131107634 1 + G A rs56224008 131107631 + 131107611 131107651 41 TGTAGCCAACTTCCTGCAGGCCCGGGGCCTGGCCTCGGGCG TGTAGCCAACTTCCTGCAGGCCCAGGGCCTGGCCTCGGGCG < 41bp 1 0.265072269058402 1 0.322271287441254 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131107631 chr9:131107634 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_8298 0 0 1 0 0 Ribosome 1 0.500231510554194 1 0.999536978891611 hm5C_site_10855 DeepMRMD:1;iRNA_m5C:0.999536978891611 10856 chr9 131152777 131152777 1 + G A rs141115931 131152795 + 131152775 131152815 41 GCGTGTGCCTCAGTTTCCTCCTCCACAACTGAATATAGTGG GCATGTGCCTCAGTTTCCTCCTCCACAACTGAATATAGTGG < 41bp 1 0.462126268993975 1 0.966353118419647 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout MIR1268A ENSG00000167118 UTR3 Human protein_coding chr9:131152795 chr9:131152777 . . 0 3 hm5C_associated_SNPs_8302 0 0 1 0 0 unknown 1 0.500231640422486 0.067293763160706 0.999536719155027 hm5C_site_10856 DeepMRMD:0.067293763160706;iRNA_m5C:0.999536719155027 10857 chr9 131183748 131183748 1 + C T rs7025672 131183767 + 131183747 131183787 41 CCAACGTGGCAGGGATCGACCACGCTGGAGGCTTCCGGGCA CTAACGTGGCAGGGATCGACCACGCTGGAGGCTTCCGGGCA < 41bp 1 0.454824460081789 1 0.654182374477386 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MIR1268A ENSG00000167123 UTR5 Human protein_coding chr9:131183767 chr9:131183748 . . 0 2 hm5C_associated_SNPs_8303 0 0 1 0 0 unknown 1 0.500231643920857 0.691635251045228 0.999536712158287 hm5C_site_10857 DeepMRMD:0.691635251045228;iRNA_m5C:0.999536712158287 10858 chr9 131185521 131185521 1 + C A rs139357437 131185530 + 131185510 131185550 41 TTTGCCAGGAACTGGGGGGCCGACTATATCCTGGTGAGGAA TTTGCCAGGAAATGGGGGGCCGACTATATCCTGGTGAGGAA < 41bp 1 0.239417094278564 1 0.323559820652008 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131185530 chr9:131185521 nonsynonymous SNV 0.978 1 12 hm5C_associated_SNPs_8304 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_10858 DeepMRMD:1;iRNA_m5C:0.999536712157815 10859 chr9 131196695 131196695 1 + C T rs7258 131196705 + 131196685 131196725 41 ACAGCTACCTCGGACGGAAGCAGGTGAACCCTGAGAAGGAG ACAGCTACCTTGGACGGAAGCAGGTGAACCCTGAGAAGGAG < 41bp 1 0.621766806373498 1 0.807101845741272 experiment 0.756466387253005 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131196705 chr9:131196695 synonymous SNV . 0 11 hm5C_associated_SNPs_8306 0 0 1 0 1 chromatin 1 0.500231643843234 0.385796308517456 0.999536712313533 hm5C_site_10859 DeepMRMD:0.385796308517456;iRNA_m5C:0.999536712313533 10860 chr9 131196704 131196704 1 + G A rs7259 131196705 + 131196685 131196725 41 ACAGCTACCTCGGACGGAAGCAGGTGAACCCTGAGAAGGAG ACAGCTACCTCGGACGGAAACAGGTGAACCCTGAGAAGGAG < 41bp 1 0.653791718928171 1 0.813618302345276 experiment 0.692416562143659 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131196705 chr9:131196704 synonymous SNV . 0 20 hm5C_associated_SNPs_8307 0 0 1 0 1 chromatin 1 0.500231634740238 0.372763395309448 0.999536730519525 hm5C_site_10860 DeepMRMD:0.372763395309448;iRNA_m5C:0.999536730519525 10861 chr9 131345032 131345032 1 + C T rs115428827 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCGCCGGGCCCAGCTAGCTGATTCTTTCCATCTGCAGC < 41bp 1 0.279127133701451 1 0.0467479825019836 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345032 synonymous SNV . 0 22 hm5C_associated_SNPs_8308 3 0 1 0 2 Nucleus 1 0.500231643922342 1 0.999536712155316 hm5C_site_10861 DeepMRMD:1;iRNA_m5C:0.999536712155316 not specified not specified 10862 chr9 131351096 131351096 1 + G A rs150731568 131351098 + 131351078 131351118 41 GGATTTTTAGCAACAAGTGGCCCCCACGGATGATGAGACTG GGATTTTTAGCAACAAGTAGCCCCCACGGATGATGAGACTG < 41bp 1 0.0285635143721557 1 0.11132287979126 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131351098 chr9:131351096 synonymous SNV . 0 19 hm5C_associated_SNPs_8309 2 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10862 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 10863 chr9 131351096 131351096 1 + G A rs150731568 131351099 + 131351079 131351119 41 GATTTTTAGCAACAAGTGGCCCCCACGGATGATGAGACTGG GATTTTTAGCAACAAGTAGCCCCCACGGATGATGAGACTGG < 41bp 1 0.163674900753012 1 0.322027325630188 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131351099 chr9:131351096 synonymous SNV . 0 18 hm5C_associated_SNPs_8310 2 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10863 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 10864 chr9 131351096 131351096 1 + G A rs150731568 131351100 + 131351080 131351120 41 ATTTTTAGCAACAAGTGGCCCCCACGGATGATGAGACTGGG ATTTTTAGCAACAAGTAGCCCCCACGGATGATGAGACTGGG < 41bp 1 0.0331725795964865 1 0.172164589166641 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131351100 chr9:131351096 synonymous SNV . 0 17 hm5C_associated_SNPs_8311 2 0 1 0 1 Nucleus 1 0.50023164392109 1 0.999536712157821 hm5C_site_10864 DeepMRMD:1;iRNA_m5C:0.999536712157821 not specified not specified 10865 chr9 131351096 131351096 1 + G A rs150731568 131351104 + 131351084 131351124 41 TTAGCAACAAGTGGCCCCCACGGATGATGAGACTGGGAAGG TTAGCAACAAGTAGCCCCCACGGATGATGAGACTGGGAAGG < 41bp 1 0.149377868690945 1 0.731662273406982 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131351104 chr9:131351096 synonymous SNV . 0 13 hm5C_associated_SNPs_8312 2 0 1 0 1 Nucleus 1 0.500231643921093 0.536675453186036 0.999536712157815 hm5C_site_10865 DeepMRMD:0.536675453186036;iRNA_m5C:0.999536712157815 not specified not specified 10866 chr9 131356538 131356538 1 + G A rs2227865 131356537 + 131356517 131356557 41 GTTTATGTTGTTCCGTGAAGCGAATGAACTACAGCAATGGA GTTTATGTTGTTCCGTGAAGCAAATGAACTACAGCAATGGA < 41bp 1 0.098875974835925 1 0.276121973991394 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131356537 chr9:131356538 synonymous SNV . 0 22 hm5C_associated_SNPs_8313 3 0 1 0 1 Nucleus 1 0.500196069776871 1 0.999607860446257 hm5C_site_10866 DeepMRMD:1;iRNA_m5C:0.999607860446257 not specified not specified 10867 chr9 131361634 131361634 1 + G A rs113164547 131361647 + 131361627 131361667 41 TGGTCTCGAACTCCCAACCTCAGGTGATCTGCCCACCTCAG TGGTCTCAAACTCCCAACCTCAGGTGATCTGCCCACCTCAG < 41bp 1 0.255890563679162 1 0.815375089645386 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIR1268A ENSG00000197694 intronic Human protein_coding chr9:131361647 chr9:131361634 . . 0 8 hm5C_associated_SNPs_8314 0 0 0 0 0 unknown 1 0.500231361153395 0.369249820709228 0.99953727769321 hm5C_site_10867 DeepMRMD:0.369249820709228;iRNA_m5C:0.99953727769321 10868 chr9 131361670 131361670 1 + T C rs7868827 131361660 + 131361640 131361680 41 CCAACCTCAGGTGATCTGCCCACCTCAGCTTCCCAGAGTGC CCAACCTCAGGTGATCTGCCCACCTCAGCTCCCCAGAGTGC < 41bp 1 0.0537632720963286 1 0.148491442203522 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIR1268A ENSG00000197694 intronic Human protein_coding chr9:131361660 chr9:131361670 . . 0 31 hm5C_associated_SNPs_8315 0 0 0 2 0 unknown 1 0.500231421511797 1 0.999537156976407 hm5C_site_10868 DeepMRMD:1;iRNA_m5C:0.999537156976407 10869 chr9 131451634 131451634 1 + G T rs577482932 131451614 + 131451594 131451634 41 GCCCGCCGCCGCCGCCTCCGCCTCCCCTCCGCGAACAGGAG GCCCGCCGCCGCCGCCTCCGCCTCCCCTCCGCGAACAGGAT < 41bp 1 0.132398247177469 1 0.248007982969284 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SET ENSG00000119335 UTR5 Human protein_coding chr9:131451614 chr9:131451634 . . 0 41 hm5C_associated_SNPs_8316 0 0 1 0 0 Ribosome 1 0.500231643921354 1 0.999536712157291 hm5C_site_10869 DeepMRMD:1;iRNA_m5C:0.999536712157291 10870 chr9 131451634 131451634 1 + G T rs577482932 131451615 + 131451595 131451635 41 CCCGCCGCCGCCGCCTCCGCCTCCCCTCCGCGAACAGGAGC CCCGCCGCCGCCGCCTCCGCCTCCCCTCCGCGAACAGGATC < 41bp 1 0.49558015450307 1 0.592079639434814 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SET ENSG00000119335 UTR5 Human protein_coding chr9:131451615 chr9:131451634 . . 0 40 hm5C_associated_SNPs_8317 0 0 1 0 0 Ribosome 1 0.500231643921078 0.815840721130372 0.999536712157845 hm5C_site_10870 DeepMRMD:0.815840721130372;iRNA_m5C:0.999536712157845 10871 chr9 131451634 131451634 1 + G T rs577482932 131451617 + 131451597 131451637 41 CGCCGCCGCCGCCTCCGCCTCCCCTCCGCGAACAGGAGCCC CGCCGCCGCCGCCTCCGCCTCCCCTCCGCGAACAGGATCCC < 41bp 1 0.405492371530012 1 0.123938590288162 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SET ENSG00000119335 UTR5 Human protein_coding chr9:131451617 chr9:131451634 . . 0 38 hm5C_associated_SNPs_8318 0 0 1 0 0 Ribosome 1 0.500231641485638 1 0.999536717028725 hm5C_site_10871 DeepMRMD:1;iRNA_m5C:0.999536717028725 10872 chr9 131451634 131451634 1 + G T rs577482932 131451618 + 131451598 131451638 41 GCCGCCGCCGCCTCCGCCTCCCCTCCGCGAACAGGAGCCCG GCCGCCGCCGCCTCCGCCTCCCCTCCGCGAACAGGATCCCG < 41bp 1 0.213646577044002 1 0.207367032766342 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SET ENSG00000119335 UTR5 Human protein_coding chr9:131451618 chr9:131451634 . . 0 37 hm5C_associated_SNPs_8319 0 0 1 0 0 Ribosome 1 0.500231643921102 1 0.999536712157795 hm5C_site_10872 DeepMRMD:1;iRNA_m5C:0.999536712157795 10873 chr9 131451634 131451634 1 + G T rs577482932 131451619 + 131451599 131451639 41 CCGCCGCCGCCTCCGCCTCCCCTCCGCGAACAGGAGCCCGG CCGCCGCCGCCTCCGCCTCCCCTCCGCGAACAGGATCCCGG < 41bp 1 0.295811763505438 1 0.0304087996482849 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SET ENSG00000119335 UTR5 Human protein_coding chr9:131451619 chr9:131451634 . . 0 36 hm5C_associated_SNPs_8320 0 0 1 0 0 Ribosome 1 0.500231643934638 1 0.999536712130723 hm5C_site_10873 DeepMRMD:1;iRNA_m5C:0.999536712130723 10874 chr9 131683725 131683725 1 + C T rs530371382 131683734 + 131683714 131683754 41 ACTACAGGTGCCCGCCACCACGCCCGGCTAATTTTTTGTAT ACTACAGGTGCTCGCCACCACGCCCGGCTAATTTTTTGTAT < 41bp 1 0.397400545939077 1 0.363295018672943 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHYHD1 ENSG00000175287 UTR5 Human protein_coding chr9:131683734 chr9:131683725 . . 0 12 hm5C_associated_SNPs_8321 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10874 DeepMRMD:1;iRNA_m5C:0.999536712157815 10875 chr9 131684572 131684572 1 + T C rs200538963 131684567 + 131684547 131684587 41 TCTCCTCCCCACCAGGAGGCCGCGCTTAGAAGCCGCCCAGT TCTCCTCCCCACCAGGAGGCCGCGCCTAGAAGCCGCCCAGT < 41bp 1 0.614272339368102 1 0.54628986120224 experiment 0.771455321263796 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHYHD1 ENSG00000175287 UTR5 Human protein_coding chr9:131684567 chr9:131684572 . . 0 26 hm5C_associated_SNPs_8322 0 0 0 0 1 Nucleus 1 0.500231643921092 0.90742027759552 0.999536712157817 hm5C_site_10875 DeepMRMD:0.90742027759552;iRNA_m5C:0.999536712157817 10876 chr9 131684572 131684572 1 + T C rs200538963 131684580 + 131684560 131684600 41 AGGAGGCCGCGCTTAGAAGCCGCCCAGTGCCCTGAGCGTCT AGGAGGCCGCGCCTAGAAGCCGCCCAGTGCCCTGAGCGTCT < 41bp 1 0.523955313684222 1 0.282963246107101 experiment 0.952089372631557 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHYHD1 ENSG00000175287 UTR5 Human protein_coding chr9:131684580 chr9:131684572 . . 0 13 hm5C_associated_SNPs_8323 0 0 0 0 1 Nucleus 1 0.500231643921968 1 0.999536712156065 hm5C_site_10876 DeepMRMD:1;iRNA_m5C:0.999536712156065 10877 chr9 131710017 131710017 1 + G A rs113241875 131710016 + 131709996 131710036 41 AAGATGGCGGCGGCCGCCGGCGGGCCGTGTGTGAGGTGCGG AAGATGGCGGCGGCCGCCGGCAGGCCGTGTGTGAGGTGCGG < 41bp 1 0.458199978855955 1 0.831292331218719 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUP188 ENSG00000095319 CDS Human protein_coding chr9:131710016 chr9:131710017 nonsynonymous SNV 0.939 0 22 hm5C_associated_SNPs_8324 1 0 1 0 1 Nucleus 1 0.500231643921092 0.337415337562562 0.999536712157815 hm5C_site_10877 DeepMRMD:0.337415337562562;iRNA_m5C:0.999536712157815 Congenital disorder of glycosylation Congenital disorder of glycosylation 10878 chr9 131710020 131710020 1 + C T rs550498774 131710016 + 131709996 131710036 41 AAGATGGCGGCGGCCGCCGGCGGGCCGTGTGTGAGGTGCGG AAGATGGCGGCGGCCGCCGGCGGGTCGTGTGTGAGGTGCGG < 41bp 1 0.594741290549529 1 0.894014835357666 experiment 0.810517418900942 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUP188 ENSG00000095319 CDS Human protein_coding chr9:131710016 chr9:131710020 nonsynonymous SNV 0.913 0 25 hm5C_associated_SNPs_8325 0 0 1 0 1 Nucleus 1 0.500231572156051 0.211970329284668 0.999536855687898 hm5C_site_10878 DeepMRMD:0.211970329284668;iRNA_m5C:0.999536855687898 10879 chr9 131730813 131730813 1 + T C rs17507971 131730830 + 131730810 131730850 41 TTGTTCAGTGCCTTCGGGAACAGTCCATGCTGCTAGAAATT TTGCTCAGTGCCTTCGGGAACAGTCCATGCTGCTAGAAATT < 41bp 1 0.0472425319106214 1 0.285892575979233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP188 ENSG00000095319 CDS Human protein_coding chr9:131730830 chr9:131730813 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_8326 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10879 DeepMRMD:1;iRNA_m5C:0.999536712157815 10880 chr9 131767727 131767727 1 + A G rs144651672 131767731 + 131767711 131767751 41 TTGCACACAGTCCAGTATGGCCTTCTCAAGATCCTCAGCAA TTGCACACAGTCCAGTGTGGCCTTCTCAAGATCCTCAGCAA < 41bp 1 0.0143796970606485 1 0.0393083095550537 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP188 ENSG00000095319 CDS Human protein_coding chr9:131767731 chr9:131767727 nonsynonymous SNV 0.947 1 17 hm5C_associated_SNPs_8327 0 0 1 0 1 Nucleus 1 0.500229929732709 1 0.999540140534583 hm5C_site_10880 DeepMRMD:1;iRNA_m5C:0.999540140534583 10881 chr9 131830567 131830567 1 + G A rs28365557 131830576 + 131830556 131830596 41 CCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGAC CCTCGGTGCTCACCGTCCTGCGGAACCGCTGGCTGTCAGAC < 41bp 1 0.63865139802899 1 0.581357479095459 experiment 0.722697203942021 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830576 chr9:131830567 nonsynonymous SNV 0.941 3 12 hm5C_associated_SNPs_8328 0 0 1 0 2 unknown 1 0.500231643921093 0.837285041809082 0.999536712157815 hm5C_site_10881 DeepMRMD:0.837285041809082;iRNA_m5C:0.999536712157815 10882 chr9 131830577 131830577 1 + G A rs566373660 131830576 + 131830556 131830596 41 CCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGAC CCTCGGTGCTCGCCGTCCTGCAGAACCGCTGGCTGTCAGAC < 41bp 1 0.652766681783549 1 0.495454281568527 experiment 0.694466636432903 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830576 chr9:131830577 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_8329 0 0 1 0 1 unknown 1 0.500231643921083 1 0.999536712157834 hm5C_site_10882 DeepMRMD:1;iRNA_m5C:0.999536712157834 10883 chr9 131846993 131846993 1 + A G rs17485947 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTGTTTGTCATCGTCGGTTTCGTGACCCT < 41bp 1 0.516703760665008 1 0.260140657424927 experiment 0.966592478669984 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131846993 synonymous SNV . 0 15 hm5C_associated_SNPs_8330 0 0 1 0 2 Ribosome 1 0.500231643921107 1 0.999536712157786 hm5C_site_10883 DeepMRMD:1;iRNA_m5C:0.999536712157786 10884 chr9 131909837 131909837 1 + G A rs549628194 131909836 + 131909816 131909856 41 CCCCATCCCCTCCCTCTGTTCGTCCCGTTTGATGAGAGGCT CCCCATCCCCTCCCTCTGTTCATCCCGTTTGATGAGAGGCT < 41bp 1 0.0783509135676748 1 0.0759182870388031 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPA ENSG00000119383 UTR3 Human protein_coding chr9:131909836 chr9:131909837 . . 0 22 hm5C_associated_SNPs_8331 0 0 1 1 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_10884 DeepMRMD:1;iRNA_m5C:0.999536712157815 10885 chr9 132265851 132265851 1 + C G rs552627183 132265871 + 132265851 132265891 41 CCATTCCTCATGCAGGCCATCGATGGAAATGTCAGACAGTG GCATTCCTCATGCAGGCCATCGATGGAAATGTCAGACAGTG < 41bp 1 0.347494852482279 1 0.490511894226074 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control LINC00963 ENSG00000204054 ncRNA_exonic Human processed_transcript chr9:132265871 chr9:132265851 . . 0 1 hm5C_associated_SNPs_8332 0 0 1 0 0 unknown 1 0.500232315221869 1 0.999535369556263 hm5C_site_10885 DeepMRMD:1;iRNA_m5C:0.999535369556263 10886 chr9 132265852 132265852 1 + C T rs551606978 132265871 + 132265851 132265891 41 CCATTCCTCATGCAGGCCATCGATGGAAATGTCAGACAGTG CTATTCCTCATGCAGGCCATCGATGGAAATGTCAGACAGTG < 41bp 1 0.295859844306406 1 0.628778755664825 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control LINC00963 ENSG00000204054 ncRNA_exonic Human processed_transcript chr9:132265871 chr9:132265852 . . 0 2 hm5C_associated_SNPs_8333 0 0 1 0 1 unknown 1 0.50024545854594 0.74244248867035 0.999509082908121 hm5C_site_10886 DeepMRMD:0.74244248867035;iRNA_m5C:0.999509082908121 10887 chr9 132265860 132265860 1 + A G rs368153196 132265871 + 132265851 132265891 41 CCATTCCTCATGCAGGCCATCGATGGAAATGTCAGACAGTG CCATTCCTCGTGCAGGCCATCGATGGAAATGTCAGACAGTG < 41bp 1 0.347043714543663 1 0.622183203697205 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control LINC00963 ENSG00000204054 ncRNA_exonic Human processed_transcript chr9:132265871 chr9:132265860 . . 0 10 hm5C_associated_SNPs_8334 0 0 1 0 1 unknown 1 0.500232686840801 0.75563359260559 0.999534626318399 hm5C_site_10887 DeepMRMD:0.75563359260559;iRNA_m5C:0.999534626318399 10888 chr9 132267193 132267193 1 + C T rs192105959 132267174 + 132267154 132267194 41 TTCCTGCTCTCCCACAGTGGCACCCGAGCTCTGTGAGGGCA TTCCTGCTCTCCCACAGTGGCACCCGAGCTCTGTGAGGGTA < 41bp 1 0.0953553624455111 1 0.157736003398895 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LINC00963 ENSG00000204054 ncRNA_exonic Human processed_transcript chr9:132267174 chr9:132267193 . . 0 40 hm5C_associated_SNPs_8335 0 0 1 0 1 unknown 1 0.500231643936062 1 0.999536712127877 hm5C_site_10888 DeepMRMD:1;iRNA_m5C:0.999536712127877 10889 chr9 132482960 132482960 1 + A G rs567572265 132482973 + 132482953 132482993 41 AAGTCCTACAGCCAGGAGGCCGCCATCGAGCAGCCCGTGGC AAGTCCTGCAGCCAGGAGGCCGCCATCGAGCAGCCCGTGGC < 41bp 1 0.688253500408729 1 0.495107024908066 experiment 0.623492999182541 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132482973 chr9:132482960 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_8336 0 0 0 0 2 chromatin 1 0.500231643921074 1 0.999536712157852 hm5C_site_10889 DeepMRMD:1;iRNA_m5C:0.999536712157852 10890 chr9 132618599 132618599 1 + C T rs181271773 132618609 + 132618589 132618629 41 ACCTGTCAGTCGTGTGGGGTCACCGGACCAAACCTATGGGC ACCTGTCAGTTGTGTGGGGTCACCGGACCAAACCTATGGGC < 41bp 1 0.64746681776607 1 0.378922581672668 experiment 0.70506636446786 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132618609 chr9:132618599 nonsynonymous SNV 0.714 2 11 hm5C_associated_SNPs_8337 0 0 1 0 2 chromatin 1 0.500231644898812 1 0.999536710202376 hm5C_site_10890 DeepMRMD:1;iRNA_m5C:0.999536710202376 10891 chr9 132897710 132897710 1 + G A rs182984721 132897716 + 132897696 132897736 41 TTCTTCTTCATTTCGGAGCTCTAAGGTGTATGCAGTTGTGA TTCTTCTTCATTTCAGAGCTCTAAGGTGTATGCAGTTGTGA < 41bp 1 0.163719018003174 1 0.210855633020401 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GPR107 ENSG00000148358 UTR3 Human protein_coding chr9:132897716 chr9:132897710 . . 0 15 hm5C_associated_SNPs_8338 0 0 1 0 0 Ribosome 1 0.500231571459177 1 0.999536857081647 hm5C_site_10891 DeepMRMD:1;iRNA_m5C:0.999536857081647 10892 chr9 132897736 132897736 1 + A G rs2240912 132897716 + 132897696 132897736 41 TTCTTCTTCATTTCGGAGCTCTAAGGTGTATGCAGTTGTGA TTCTTCTTCATTTCGGAGCTCTAAGGTGTATGCAGTTGTGG < 41bp 1 0.177844578247922 1 0.318390011787415 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GPR107 ENSG00000148358 UTR3 Human protein_coding chr9:132897716 chr9:132897736 . . 0 41 hm5C_associated_SNPs_8339 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_10892 DeepMRMD:1;iRNA_m5C:0.999536712157815 10893 chr9 132898032 132898032 1 + C T rs534769669 132898046 + 132898026 132898066 41 GAGGCCCAGTGGTCTTCTTTCCAACAGGAAAAGAAGGCTGT GAGGCCTAGTGGTCTTCTTTCCAACAGGAAAAGAAGGCTGT < 41bp 1 0.0878579068183716 1 0.575630307197571 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR107 ENSG00000148358 UTR3 Human protein_coding chr9:132898046 chr9:132898032 . . 0 7 hm5C_associated_SNPs_8340 0 0 1 0 0 Ribosome 1 0.500231643921092 0.848739385604858 0.999536712157815 hm5C_site_10893 DeepMRMD:0.848739385604858;iRNA_m5C:0.999536712157815 10894 chr9 132898041 132898041 1 + T C rs548506502 132898046 + 132898026 132898066 41 GAGGCCCAGTGGTCTTCTTTCCAACAGGAAAAGAAGGCTGT GAGGCCCAGTGGTCTCCTTTCCAACAGGAAAAGAAGGCTGT < 41bp 1 0.0877899408341792 1 0.424809098243713 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR107 ENSG00000148358 UTR3 Human protein_coding chr9:132898046 chr9:132898041 . . 0 16 hm5C_associated_SNPs_8341 0 0 1 0 0 Ribosome 1 0.500231643921087 1 0.999536712157826 hm5C_site_10894 DeepMRMD:1;iRNA_m5C:0.999536712157826 10895 chr9 132898050 132898050 1 + C G rs12336580 132898046 + 132898026 132898066 41 GAGGCCCAGTGGTCTTCTTTCCAACAGGAAAAGAAGGCTGT GAGGCCCAGTGGTCTTCTTTCCAAGAGGAAAAGAAGGCTGT < 41bp 1 0.281369273926348 1 0.863939642906189 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR107 ENSG00000148358 UTR3 Human protein_coding chr9:132898046 chr9:132898050 . . 0 25 hm5C_associated_SNPs_8342 0 0 1 0 0 Ribosome 1 0.500231643921092 0.272120714187622 0.999536712157815 hm5C_site_10895 DeepMRMD:0.272120714187622;iRNA_m5C:0.999536712157815 Parkinson's disease 10896 chr9 132898905 132898905 1 + G A rs192265775 132898922 + 132898902 132898942 41 ACTGTCCCAAGTTTGGGAACCTGAAAAAGTCTCCATTCAGA ACTATCCCAAGTTTGGGAACCTGAAAAAGTCTCCATTCAGA < 41bp 1 0.574440901622218 1 0.445203006267548 experiment 0.851118196755565 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR107 ENSG00000148358 UTR3 Human protein_coding chr9:132898922 chr9:132898905 . . 0 4 hm5C_associated_SNPs_8343 0 0 1 0 0 Ribosome 1 0.500231643921109 1 0.999536712157783 hm5C_site_10896 DeepMRMD:1;iRNA_m5C:0.999536712157783 10897 chr9 132900350 132900350 1 + G C rs73670515 132900369 + 132900349 132900389 41 TGAGTGGCCAAGGACTTGATCAGCCCATTTCTTGGTCCCTC TCAGTGGCCAAGGACTTGATCAGCCCATTTCTTGGTCCCTC < 41bp 1 0.378133501219753 1 0.775796115398407 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPR107 ENSG00000148358 UTR3 Human protein_coding chr9:132900369 chr9:132900350 . . 0 2 hm5C_associated_SNPs_8344 0 0 1 0 0 Ribosome 1 0.500231643921729 0.448407769203186 0.999536712156541 hm5C_site_10897 DeepMRMD:0.448407769203186;iRNA_m5C:0.999536712156541 10898 chr9 132995443 132995443 1 + G C rs181988596 132995448 + 132995428 132995468 41 CCGCCTGAAGCCACCGGCTCCAATTGCCAGCAACCTCTGCT CCGCCTGAAGCCACCCGCTCCAATTGCCAGCAACCTCTGCT < 41bp 1 0.0664239738703058 1 0.117379575967789 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCS1 ENSG00000107130 UTR3 Human protein_coding chr9:132995448 chr9:132995443 . . 0 16 hm5C_associated_SNPs_8345 0 0 1 0 0 Cytosol 1 0.5002321999911 1 0.9995356000178 hm5C_site_10898 DeepMRMD:1;iRNA_m5C:0.9995356000178 10899 chr9 132995561 132995561 1 + C T rs532585238 132995579 + 132995559 132995599 41 CCCGCTCTCTTGCGCGTGTGCTTTTGTTTTTTATTTTGAAC CCTGCTCTCTTGCGCGTGTGCTTTTGTTTTTTATTTTGAAC < 41bp 1 0.0320853404869998 1 0.065133273601532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCS1 ENSG00000107130 UTR3 Human protein_coding chr9:132995579 chr9:132995561 . . 0 3 hm5C_associated_SNPs_8346 0 0 1 0 0 Cytosol 1 0.500231643895084 1 0.999536712209832 hm5C_site_10899 DeepMRMD:1;iRNA_m5C:0.999536712209832 10900 chr9 132998037 132998037 1 + G A rs565815929 132998035 + 132998015 132998055 41 GGCCTCTGGCTGCAGTGATGCCGCAGAATCCTGAGCCAGGT GGCCTCTGGCTGCAGTGATGCCACAGAATCCTGAGCCAGGT < 41bp 1 0.548459494853979 1 0.215095788240433 experiment 0.903081010292043 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCS1 ENSG00000107130 UTR3 Human protein_coding chr9:132998035 chr9:132998037 . . 0 23 hm5C_associated_SNPs_8347 0 0 1 0 0 Cytosol 1 0.500231759488851 1 0.999536481022297 hm5C_site_10900 DeepMRMD:1;iRNA_m5C:0.999536481022297 10901 chr9 133511426 133511426 1 + G A rs141995643 133511425 + 133511405 133511445 41 TCCTCAGGCCAGCTCCCCACCGGACTACACAATGGCCTGGG TCCTCAGGCCAGCTCCCCACCAGACTACACAATGGCCTGGG < 41bp 1 0.650865066884322 1 0.681458473205566 experiment 0.698269866231356 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133511425 chr9:133511426 synonymous SNV . 0 22 hm5C_associated_SNPs_8348 0 0 1 0 2 Ribosome 1 0.500231643921092 0.637083053588868 0.999536712157815 hm5C_site_10901 DeepMRMD:0.637083053588868;iRNA_m5C:0.999536712157815 10902 chr9 133760749 133760749 1 + C T rs34276964 133760729 + 133760709 133760749 41 CTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGATCGCCAGC CTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGATCGCCAGT < 41bp 1 0.010593770791295 1 0.108286499977112 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760729 chr9:133760749 synonymous SNV . 0 41 hm5C_associated_SNPs_8350 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644002889 1 0.999536711994222 hm5C_site_10902 DeepMRMD:1;iRNA_m5C:0.999536711994222 10903 chr9 133760983 133760983 1 + G A rs35829966 133760999 + 133760979 133761019 41 CGGCGACAGCAGGCAGTGGTCCAGCGGCCACTCAGGACTTC CGGCAACAGCAGGCAGTGGTCCAGCGGCCACTCAGGACTTC < 41bp 1 0.309008574715949 1 0.829981744289398 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760999 chr9:133760983 synonymous SNV . 0 5 hm5C_associated_SNPs_8351 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644042611 0.340036511421204 0.999536711914779 hm5C_site_10903 DeepMRMD:0.340036511421204;iRNA_m5C:0.999536711914779 10904 chr9 133760983 133760983 1 + G A rs35829966 133761000 + 133760980 133761020 41 GGCGACAGCAGGCAGTGGTCCAGCGGCCACTCAGGACTTCA GGCAACAGCAGGCAGTGGTCCAGCGGCCACTCAGGACTTCA < 41bp 1 0.470082437409061 1 0.745192646980286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133761000 chr9:133760983 synonymous SNV . 0 4 hm5C_associated_SNPs_8352 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643432092 0.509614706039428 0.999536713135815 hm5C_site_10904 DeepMRMD:0.509614706039428;iRNA_m5C:0.999536713135815 10905 chr9 133761001 133761001 1 + A C rs1056171 133760999 + 133760979 133761019 41 CGGCGACAGCAGGCAGTGGTCCAGCGGCCACTCAGGACTTC CGGCGACAGCAGGCAGTGGTCCCGCGGCCACTCAGGACTTC < 41bp 1 0.384232422699083 1 0.499974191188812 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760999 chr9:133761001 synonymous SNV . 0 23 hm5C_associated_SNPs_8353 0 0 1 0 0 Endoplasmic reticulum 1 0.500231614280019 1 0.999536771439962 hm5C_site_10905 DeepMRMD:1;iRNA_m5C:0.999536771439962 10906 chr9 133761001 133761001 1 + A C rs1056171 133761000 + 133760980 133761020 41 GGCGACAGCAGGCAGTGGTCCAGCGGCCACTCAGGACTTCA GGCGACAGCAGGCAGTGGTCCCGCGGCCACTCAGGACTTCA < 41bp 1 0.247247956585828 1 0.478059411048889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133761000 chr9:133761001 synonymous SNV . 0 22 hm5C_associated_SNPs_8354 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643455731 1 0.999536713088538 hm5C_site_10906 DeepMRMD:1;iRNA_m5C:0.999536713088538 10907 chr9 133761992 133761992 1 + G C rs3088011 133761984 + 133761964 133762004 41 CCAAATAGCCCCAGACTGGGCCCAGGCAGGTCTGCAAGGGC CCAAATAGCCCCAGACTGGGCCCAGGCACGTCTGCAAGGGC < 41bp 1 0.248076289460586 1 0.273438215255737 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 UTR3 Human protein_coding chr9:133761984 chr9:133761992 . . 0 29 hm5C_associated_SNPs_8355 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10907 DeepMRMD:1;iRNA_m5C:0.999536712157815 10908 chr9 133761992 133761992 1 + G C rs3088011 133761985 + 133761965 133762005 41 CAAATAGCCCCAGACTGGGCCCAGGCAGGTCTGCAAGGGCC CAAATAGCCCCAGACTGGGCCCAGGCACGTCTGCAAGGGCC < 41bp 1 0.237021946830685 1 0.253504544496536 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 UTR3 Human protein_coding chr9:133761985 chr9:133761992 . . 0 28 hm5C_associated_SNPs_8356 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164354167 1 0.999536712916659 hm5C_site_10908 DeepMRMD:1;iRNA_m5C:0.999536712916659 10909 chr9 133761992 133761992 1 + G C rs3088011 133761986 + 133761966 133762006 41 AAATAGCCCCAGACTGGGCCCAGGCAGGTCTGCAAGGGCCC AAATAGCCCCAGACTGGGCCCAGGCACGTCTGCAAGGGCCC < 41bp 1 0.404668971926656 1 0.418241381645203 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 UTR3 Human protein_coding chr9:133761986 chr9:133761992 . . 0 27 hm5C_associated_SNPs_8357 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157813 hm5C_site_10909 DeepMRMD:1;iRNA_m5C:0.999536712157813 10910 chr9 134026024 134026024 1 + T C rs75412063 134026009 + 134025989 134026029 41 TGTGGCTTCTACAGATTGCACACTTTCAGAAGGAGTTGGAA TGTGGCTTCTACAGATTGCACACTTTCAGAAGGAGCTGGAA < 41bp 1 0.110703534270033 1 0.0532021522521973 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134026009 chr9:134026024 synonymous SNV . 0 36 hm5C_associated_SNPs_8358 0 0 1 0 1 Cytosol 1 0.500231614679823 1 0.999536770640354 hm5C_site_10910 DeepMRMD:1;iRNA_m5C:0.999536770640354 10911 chr9 134374274 134374274 1 + C G rs3739501 134374276 + 134374256 134374296 41 CAGAGTGTGGGTATACATCTCAGATGCCCATCTACCCACTG CAGAGTGTGGGTATACATGTCAGATGCCCATCTACCCACTG < 41bp 1 0.417544788846883 1 0.244955867528915 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control PRRC2B ENSG00000130723 UTR3 Human protein_coding chr9:134374276 chr9:134374274 . . 0 19 hm5C_associated_SNPs_8359 0 0 1 0 0 Nucleus 1 0.500231651843096 1 0.999536696313809 hm5C_site_10911 DeepMRMD:1;iRNA_m5C:0.999536696313809 10912 chr9 134398914 134398914 1 + G A rs10257 134398897 + 134398877 134398917 41 CCTCCTTCATGAACACCCAGCAACCTGAGCAAGTCCCGGCC CCTCCTTCATGAACACCCAGCAACCTGAGCAAGTCCCAGCC < 41bp 1 0.410817582542941 1 0.391762375831604 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POMT1 ENSG00000130714 UTR3 Human protein_coding chr9:134398897 chr9:134398914 . . 0 38 hm5C_associated_SNPs_8360 1 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_10912 DeepMRMD:1;iRNA_m5C:0.999536712157815 Limb-Girdle Muscular Dystrophy, Recessive Limb-Girdle Muscular Dystrophy, Recessive 10913 chr9 135546021 135546021 1 + G A rs146201597 135546032 + 135546012 135546052 41 GGGGCCCGCGGACGACGGGCCTGCGCCGTCTGGGGAGGAGG GGGGCCCGCAGACGACGGGCCTGCGCCGTCTGGGGAGGAGG < 41bp 1 0.580474465069322 1 0.0947945415973663 experiment 0.839051069861357 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GTF3C4 ENSG00000125484 CDS Human protein_coding chr9:135546032 chr9:135546021 synonymous SNV . 0 10 hm5C_associated_SNPs_8361 0 0 1 0 0 Ribosome 1 0.500231643919696 1 0.999536712160608 hm5C_site_10913 DeepMRMD:1;iRNA_m5C:0.999536712160608 10914 chr9 135919225 135919225 1 + C A rs150056568 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTCCGGCCCGAGAAGGAGGCCTTTTTCCACAAGGAGCTGCC < 41bp 1 0.0471820134877633 1 0.0343334376811981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919225 nonsynonymous SNV 0.998 1 31 hm5C_associated_SNPs_8363 0 0 1 0 1 Ribosome 1 0.500231643939151 1 0.999536712121699 hm5C_site_10914 DeepMRMD:1;iRNA_m5C:0.999536712121699 10915 chr9 135926262 135926262 1 + A C rs573684000 135926282 + 135926262 135926302 41 AGGATGAGGAGGTGCCCAAGCAGCCACTGGAGGCTGCAGCC CGGATGAGGAGGTGCCCAAGCAGCCACTGGAGGCTGCAGCC < 41bp 1 0.649441920388286 1 0.548700869083405 experiment 0.701116159223429 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135926282 chr9:135926262 nonsynonymous SNV 0.946 0 1 hm5C_associated_SNPs_8364 0 0 1 0 1 Ribosome 1 0.500231643921092 0.90259826183319 0.999536712157815 hm5C_site_10915 DeepMRMD:0.90259826183319;iRNA_m5C:0.999536712157815 10916 chr9 135926322 135926322 1 + G A rs183668839 135926303 + 135926283 135926323 41 AGCCACTGGAGGCTGCAGCCCAGACGTGGAGGAGAGTCTGC AGCCACTGGAGGCTGCAGCCCAGACGTGGAGGAGAGTCTAC < 41bp 1 0.505529571382455 1 0.404850125312805 experiment 0.988940857235091 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135926303 chr9:135926322 nonsynonymous SNV 0.200 2 40 hm5C_associated_SNPs_8365 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10916 DeepMRMD:1;iRNA_m5C:0.999536712157815 10917 chr9 135933324 135933324 1 + G A rs199967129 135933325 + 135933305 135933345 41 GACTTCAAGCCATCCGACGGCAGTGAAAACGAAATGGAGAC GACTTCAAGCCATCCGACGACAGTGAAAACGAAATGGAGAC < 41bp 1 0.402505653165546 1 0.657388269901276 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135933325 chr9:135933324 nonsynonymous SNV 0.826 3 20 hm5C_associated_SNPs_8366 0 0 1 0 0 Ribosome 1 0.500231643921562 0.685223460197448 0.999536712156875 hm5C_site_10917 DeepMRMD:0.685223460197448;iRNA_m5C:0.999536712156875 10918 chr9 135933334 135933334 1 + C T rs543316151 135933325 + 135933305 135933345 41 GACTTCAAGCCATCCGACGGCAGTGAAAACGAAATGGAGAC GACTTCAAGCCATCCGACGGCAGTGAAAATGAAATGGAGAC < 41bp 1 0.310889167268623 1 0.560102343559265 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135933325 chr9:135933334 synonymous SNV . 0 30 hm5C_associated_SNPs_8367 0 0 1 0 0 Ribosome 1 0.500231643921093 0.87979531288147 0.999536712157815 hm5C_site_10918 DeepMRMD:0.87979531288147;iRNA_m5C:0.999536712157815 10919 chr9 135946626 135946626 1 + C G rs547508699 135946625 + 135946605 135946645 41 CCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGG CCCCACGGGTGACTCCGAGACGGCCCCCGTGCCGCCCACGG < 41bp 1 0.582457756855703 1 0.58415961265564 experiment 0.835084486288594 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946625 chr9:135946626 synonymous SNV . 0 22 hm5C_associated_SNPs_8370 0 0 0 0 0 exosome 1 0.500231413301877 0.83168077468872 0.999537173396245 hm5C_site_10919 DeepMRMD:0.83168077468872;iRNA_m5C:0.999537173396245 10920 chr9 135946995 135946995 1 + C A rs374403885 135946988 + 135946968 135947008 41 GCCCACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGG GCCCACGGGTGACTCCGGGGCCCCCCCAGTGACCCCCACGG < 41bp 1 0.180084655595064 1 0.113260805606842 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946988 chr9:135946995 synonymous SNV . 0 28 hm5C_associated_SNPs_8372 0 0 0 0 0 exosome 1 0.500239443938203 1 0.999521112123595 hm5C_site_10920 DeepMRMD:1;iRNA_m5C:0.999521112123595 10921 chr9 135946995 135946995 1 + C A rs374403885 135946989 + 135946969 135947009 41 CCCACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGG CCCACGGGTGACTCCGGGGCCCCCCCAGTGACCCCCACGGG < 41bp 1 0.208346459583984 1 0.0748102962970734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946989 chr9:135946995 synonymous SNV . 0 27 hm5C_associated_SNPs_8373 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_10921 DeepMRMD:1;iRNA_m5C:0.999536712157815 10922 chr9 135946995 135946995 1 + C A rs374403885 135946990 + 135946970 135947010 41 CCACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGT CCACGGGTGACTCCGGGGCCCCCCCAGTGACCCCCACGGGT < 41bp 1 0.184940249876017 1 0.0960419476032257 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946990 chr9:135946995 synonymous SNV . 0 26 hm5C_associated_SNPs_8374 0 0 0 0 0 exosome 1 0.503323727569976 1 0.993352544860048 hm5C_site_10922 DeepMRMD:1;iRNA_m5C:0.993352544860048 10923 chr9 135946995 135946995 1 + C A rs374403885 135946992 + 135946972 135947012 41 ACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGA ACGGGTGACTCCGGGGCCCCCCCAGTGACCCCCACGGGTGA < 41bp 1 0.630987581595032 1 0.526680946350098 experiment 0.738024836809937 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946992 chr9:135946995 synonymous SNV . 0 24 hm5C_associated_SNPs_8376 0 0 0 0 0 exosome 1 0.501260208454499 0.946638107299804 0.997479583091001 hm5C_site_10923 DeepMRMD:0.946638107299804;iRNA_m5C:0.997479583091001 10924 chr9 135946995 135946995 1 + C A rs374403885 135946993 + 135946973 135947013 41 CGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGAC CGGGTGACTCCGGGGCCCCCCCAGTGACCCCCACGGGTGAC < 41bp 1 0.543737119131164 1 0.230398803949356 experiment 0.912525761737672 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946993 chr9:135946995 synonymous SNV . 0 23 hm5C_associated_SNPs_8377 0 0 0 0 0 exosome 1 0.500231643921016 1 0.999536712157967 hm5C_site_10924 DeepMRMD:1;iRNA_m5C:0.999536712157967 10925 chr9 135946995 135946995 1 + C A rs374403885 135946994 + 135946974 135947014 41 GGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGACT GGGTGACTCCGGGGCCCCCCCAGTGACCCCCACGGGTGACT < 41bp 1 0.559296898121966 1 0.787259578704834 experiment 0.881406203756068 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946994 chr9:135946995 synonymous SNV . 0 22 hm5C_associated_SNPs_8378 0 0 0 0 0 exosome 1 0.500231643938151 0.425480842590332 0.999536712123698 hm5C_site_10925 DeepMRMD:0.425480842590332;iRNA_m5C:0.999536712123698 10926 chr9 135946995 135946995 1 + C A rs374403885 135947000 + 135946980 135947020 41 CTCCGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGA CTCCGGGGCCCCCCCAGTGACCCCCACGGGTGACTCCGAGA < 41bp 1 0.30332557523439 1 0.0590808093547821 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947000 chr9:135946995 synonymous SNV . 0 16 hm5C_associated_SNPs_8379 0 0 0 0 0 exosome 1 0.500231656168919 1 0.999536687662163 hm5C_site_10926 DeepMRMD:1;iRNA_m5C:0.999536687662163 10927 chr9 135946995 135946995 1 + C A rs374403885 135947001 + 135946981 135947021 41 TCCGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGAC TCCGGGGCCCCCCCAGTGACCCCCACGGGTGACTCCGAGAC < 41bp 1 0.695963085982521 1 0.0982178747653961 experiment 0.608073828034957 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947001 chr9:135946995 synonymous SNV . 0 15 hm5C_associated_SNPs_8380 0 0 0 0 0 exosome 1 0.500231358231822 1 0.999537283536355 hm5C_site_10927 DeepMRMD:1;iRNA_m5C:0.999537283536355 10928 chr9 135946995 135946995 1 + C A rs374403885 135947002 + 135946982 135947022 41 CCGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACC CCGGGGCCCCCCCAGTGACCCCCACGGGTGACTCCGAGACC < 41bp 1 0.307194013899286 1 0.0535656809806824 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947002 chr9:135946995 synonymous SNV . 0 14 hm5C_associated_SNPs_8381 0 0 0 0 0 exosome 1 0.500370528030025 1 0.999258943939951 hm5C_site_10928 DeepMRMD:1;iRNA_m5C:0.999258943939951 10929 chr9 135946995 135946995 1 + C A rs374403885 135947003 + 135946983 135947023 41 CGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACCG CGGGGCCCCCCCAGTGACCCCCACGGGTGACTCCGAGACCG < 41bp 1 0.554809483426999 1 0.280353486537933 experiment 0.890381033146002 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947003 chr9:135946995 synonymous SNV . 0 13 hm5C_associated_SNPs_8382 0 0 0 0 0 exosome 1 0.500231330144349 1 0.999537339711302 hm5C_site_10929 DeepMRMD:1;iRNA_m5C:0.999537339711302 10930 chr9 135946995 135946995 1 + C A rs374403885 135947013 + 135946993 135947033 41 CCCGTGACCCCCACGGGTGACTCCGAGACCGCCCCCGTGCC CCAGTGACCCCCACGGGTGACTCCGAGACCGCCCCCGTGCC < 41bp 1 0.656197500996642 1 0.29084724187851 experiment 0.687604998006715 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947013 chr9:135946995 synonymous SNV . 0 3 hm5C_associated_SNPs_8383 0 0 0 0 0 exosome 1 0.500231629880703 1 0.999536740238594 hm5C_site_10930 DeepMRMD:1;iRNA_m5C:0.999536740238594 10931 chr9 135947001 135947001 1 + C G rs550222823 135946988 + 135946968 135947008 41 GCCCACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGG GCCCACGGGTGACTCCGGGGCCCCCCCCGTGACGCCCACGG < 41bp 1 0.173375750529422 1 0.14541894197464 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946988 chr9:135947001 synonymous SNV . 0 34 hm5C_associated_SNPs_8385 0 0 0 0 0 exosome 1 0.500231643921069 1 0.999536712157862 hm5C_site_10931 DeepMRMD:1;iRNA_m5C:0.999536712157862 10932 chr9 135947001 135947001 1 + C G rs550222823 135946989 + 135946969 135947009 41 CCCACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGG CCCACGGGTGACTCCGGGGCCCCCCCCGTGACGCCCACGGG < 41bp 1 0.17330519104341 1 0.0681654810905457 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946989 chr9:135947001 synonymous SNV . 0 33 hm5C_associated_SNPs_8386 0 0 0 0 0 exosome 1 0.500231643940754 1 0.999536712118491 hm5C_site_10932 DeepMRMD:1;iRNA_m5C:0.999536712118491 10933 chr9 135947001 135947001 1 + C G rs550222823 135946990 + 135946970 135947010 41 CCACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGT CCACGGGTGACTCCGGGGCCCCCCCCGTGACGCCCACGGGT < 41bp 1 0.189036052813934 1 0.0885954797267914 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946990 chr9:135947001 synonymous SNV . 0 32 hm5C_associated_SNPs_8387 0 0 0 0 0 exosome 1 0.500231643921109 1 0.999536712157782 hm5C_site_10933 DeepMRMD:1;iRNA_m5C:0.999536712157782 10934 chr9 135947001 135947001 1 + C G rs550222823 135946991 + 135946971 135947011 41 CACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTG CACGGGTGACTCCGGGGCCCCCCCCGTGACGCCCACGGGTG < 41bp 1 0.34405906470641 1 0.195649445056915 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946991 chr9:135947001 synonymous SNV . 0 31 hm5C_associated_SNPs_8388 0 0 0 0 0 exosome 1 0.500231643571076 1 0.999536712857849 hm5C_site_10934 DeepMRMD:1;iRNA_m5C:0.999536712857849 10935 chr9 135947001 135947001 1 + C G rs550222823 135946992 + 135946972 135947012 41 ACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGA ACGGGTGACTCCGGGGCCCCCCCCGTGACGCCCACGGGTGA < 41bp 1 0.672273760350289 1 0.500306010246277 experiment 0.655452479299422 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946992 chr9:135947001 synonymous SNV . 0 30 hm5C_associated_SNPs_8389 0 0 0 0 0 exosome 1 0.500231643922926 0.999387979507446 0.999536712154149 hm5C_site_10935 DeepMRMD:0.999387979507446;iRNA_m5C:0.999536712154149 10936 chr9 135947001 135947001 1 + C G rs550222823 135946993 + 135946973 135947013 41 CGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGAC CGGGTGACTCCGGGGCCCCCCCCGTGACGCCCACGGGTGAC < 41bp 1 0.598030640462321 1 0.324275135993958 experiment 0.803938719075358 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946993 chr9:135947001 synonymous SNV . 0 29 hm5C_associated_SNPs_8390 0 0 0 0 0 exosome 1 0.500231633733078 1 0.999536732533844 hm5C_site_10936 DeepMRMD:1;iRNA_m5C:0.999536732533844 10937 chr9 135947001 135947001 1 + C G rs550222823 135946994 + 135946974 135947014 41 GGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGACT GGGTGACTCCGGGGCCCCCCCCGTGACGCCCACGGGTGACT < 41bp 1 0.320770284628446 1 0.703312158584595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946994 chr9:135947001 synonymous SNV . 0 28 hm5C_associated_SNPs_8391 0 0 0 0 0 exosome 1 0.500231643921095 0.59337568283081 0.999536712157811 hm5C_site_10937 DeepMRMD:0.59337568283081;iRNA_m5C:0.999536712157811 10938 chr9 135947001 135947001 1 + C G rs550222823 135947000 + 135946980 135947020 41 CTCCGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGA CTCCGGGGCCCCCCCCGTGACGCCCACGGGTGACTCCGAGA < 41bp 1 0.553944474721007 1 0.0601918399333954 experiment 0.892111050557985 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947000 chr9:135947001 synonymous SNV . 0 22 hm5C_associated_SNPs_8393 0 0 0 0 0 exosome 1 0.500268078370084 1 0.999463843259832 hm5C_site_10938 DeepMRMD:1;iRNA_m5C:0.999463843259832 10939 chr9 135947001 135947001 1 + C G rs550222823 135947002 + 135946982 135947022 41 CCGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACC CCGGGGCCCCCCCCGTGACGCCCACGGGTGACTCCGAGACC < 41bp 1 0.312935622944199 1 0.0535506308078766 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947002 chr9:135947001 synonymous SNV . 0 20 hm5C_associated_SNPs_8394 0 0 0 0 0 exosome 1 0.500231657263718 1 0.999536685472564 hm5C_site_10939 DeepMRMD:1;iRNA_m5C:0.999536685472564 10940 chr9 135947001 135947001 1 + C G rs550222823 135947003 + 135946983 135947023 41 CGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACCG CGGGGCCCCCCCCGTGACGCCCACGGGTGACTCCGAGACCG < 41bp 1 0.533134252739968 1 0.172788470983505 experiment 0.933731494520064 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947003 chr9:135947001 synonymous SNV . 0 19 hm5C_associated_SNPs_8395 0 0 0 0 0 exosome 1 0.500231641425361 1 0.999536717149277 hm5C_site_10940 DeepMRMD:1;iRNA_m5C:0.999536717149277 10941 chr9 135947001 135947001 1 + C G rs550222823 135947021 + 135947001 135947041 41 CCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGG GCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGG < 41bp 1 0.361143685905238 1 0.349797308444977 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947021 chr9:135947001 synonymous SNV . 0 1 hm5C_associated_SNPs_8398 0 0 0 0 0 exosome 1 0.500231666757781 1 0.999536666484439 hm5C_site_10941 DeepMRMD:1;iRNA_m5C:0.999536666484439 10942 chr9 135947023 135947023 1 + G A rs75294797 135947003 + 135946983 135947023 41 CGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACCG CGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACCA < 41bp 1 0.573218285687955 1 0.25705498456955 experiment 0.853563428624089 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947003 chr9:135947023 nonsynonymous SNV 0.000 0 41 hm5C_associated_SNPs_8399 1 0 0 0 0 exosome 1 0.500506841431517 1 0.998986317136966 hm5C_site_10942 DeepMRMD:1;iRNA_m5C:0.998986317136966 not specified not specified 10943 chr9 135947023 135947023 1 + G A rs75294797 135947013 + 135946993 135947033 41 CCCGTGACCCCCACGGGTGACTCCGAGACCGCCCCCGTGCC CCCGTGACCCCCACGGGTGACTCCGAGACCACCCCCGTGCC < 41bp 1 0.687065564111531 1 0.238850265741348 experiment 0.625868871776938 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947013 chr9:135947023 nonsynonymous SNV 0.000 0 31 hm5C_associated_SNPs_8400 1 0 0 0 0 exosome 1 0.500231620243043 1 0.999536759513913 hm5C_site_10943 DeepMRMD:1;iRNA_m5C:0.999536759513913 not specified not specified 10944 chr9 135947023 135947023 1 + G A rs75294797 135947021 + 135947001 135947041 41 CCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGG CCCCACGGGTGACTCCGAGACCACCCCCGTGCCGCCCACGG < 41bp 1 0.213025024284479 1 0.159639596939087 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947021 chr9:135947023 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_8402 1 0 0 0 0 exosome 1 0.500231643947195 1 0.99953671210561 hm5C_site_10944 DeepMRMD:1;iRNA_m5C:0.99953671210561 not specified not specified 10945 chr9 135947023 135947023 1 + G A rs75294797 135947022 + 135947002 135947042 41 CCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGG CCCACGGGTGACTCCGAGACCACCCCCGTGCCGCCCACGGG < 41bp 1 0.492561815674835 1 0.109271466732025 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947022 chr9:135947023 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_8403 1 0 0 0 0 exosome 1 0.500231644617062 1 0.999536710765876 hm5C_site_10945 DeepMRMD:1;iRNA_m5C:0.999536710765876 not specified not specified 10946 chr9 135947023 135947023 1 + G A rs75294797 135947024 + 135947004 135947044 41 CACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTG CACGGGTGACTCCGAGACCACCCCCGTGCCGCCCACGGGTG < 41bp 1 0.342382088569538 1 0.130371540784836 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947024 chr9:135947023 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_8404 1 0 0 0 0 exosome 1 0.500231644262141 1 0.999536711475719 hm5C_site_10946 DeepMRMD:1;iRNA_m5C:0.999536711475719 not specified not specified 10947 chr9 135947023 135947023 1 + G A rs75294797 135947025 + 135947005 135947045 41 ACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGA ACGGGTGACTCCGAGACCACCCCCGTGCCGCCCACGGGTGA < 41bp 1 0.574483643660563 1 0.267602235078812 experiment 0.851032712678874 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947025 chr9:135947023 nonsynonymous SNV 0.000 0 19 hm5C_associated_SNPs_8405 1 0 0 0 0 exosome 1 0.500230929079008 1 0.999538141841984 hm5C_site_10947 DeepMRMD:1;iRNA_m5C:0.999538141841984 not specified not specified 10948 chr9 135947023 135947023 1 + G A rs75294797 135947026 + 135947006 135947046 41 CGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGAC CGGGTGACTCCGAGACCACCCCCGTGCCGCCCACGGGTGAC < 41bp 1 0.527634322388806 1 0.111023843288422 experiment 0.944731355222387 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947026 chr9:135947023 nonsynonymous SNV 0.000 0 18 hm5C_associated_SNPs_8406 1 0 0 0 0 exosome 1 0.500231557050594 1 0.999536885898812 hm5C_site_10948 DeepMRMD:1;iRNA_m5C:0.999536885898812 not specified not specified 10949 chr9 135947023 135947023 1 + G A rs75294797 135947027 + 135947007 135947047 41 GGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACT GGGTGACTCCGAGACCACCCCCGTGCCGCCCACGGGTGACT < 41bp 1 0.268871836122029 1 0.187767773866653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947027 chr9:135947023 nonsynonymous SNV 0.000 0 17 hm5C_associated_SNPs_8407 1 0 0 0 0 exosome 1 0.50018587204843 1 0.99962825590314 hm5C_site_10949 DeepMRMD:1;iRNA_m5C:0.99962825590314 not specified not specified 10950 chr9 135947023 135947023 1 + G A rs75294797 135947028 + 135947008 135947048 41 GGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTC GGTGACTCCGAGACCACCCCCGTGCCGCCCACGGGTGACTC < 41bp 1 0.390256992472448 1 0.238293886184692 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947028 chr9:135947023 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_8408 1 0 0 0 0 exosome 1 0.500231641667772 1 0.999536716664456 hm5C_site_10950 DeepMRMD:1;iRNA_m5C:0.999536716664456 not specified not specified 10951 chr9 135947023 135947023 1 + G A rs75294797 135947032 + 135947012 135947052 41 ACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGG ACTCCGAGACCACCCCCGTGCCGCCCACGGGTGACTCCGGG < 41bp 1 0.285714875664799 1 0.332650244235992 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947032 chr9:135947023 nonsynonymous SNV 0.000 0 12 hm5C_associated_SNPs_8409 1 0 0 0 0 exosome 1 0.500232635812074 1 0.999534728375852 hm5C_site_10951 DeepMRMD:1;iRNA_m5C:0.999534728375852 not specified not specified 10952 chr9 135947023 135947023 1 + G A rs75294797 135947033 + 135947013 135947053 41 CTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGG CTCCGAGACCACCCCCGTGCCGCCCACGGGTGACTCCGGGG < 41bp 1 0.483821924796795 1 0.306022644042969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947033 chr9:135947023 nonsynonymous SNV 0.000 0 11 hm5C_associated_SNPs_8410 1 0 0 0 0 exosome 1 0.500231643339064 1 0.999536713321872 hm5C_site_10952 DeepMRMD:1;iRNA_m5C:0.999536713321872 not specified not specified 10953 chr9 135947023 135947023 1 + G A rs75294797 135947035 + 135947015 135947055 41 CCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC CCGAGACCACCCCCGTGCCGCCCACGGGTGACTCCGGGGCC < 41bp 1 0.215402611231462 1 0.115961879491806 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947035 chr9:135947023 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_8411 1 0 0 0 0 exosome 1 0.500231639267867 1 0.999536721464266 hm5C_site_10953 DeepMRMD:1;iRNA_m5C:0.999536721464266 not specified not specified 10954 chr9 135947023 135947023 1 + G A rs75294797 135947036 + 135947016 135947056 41 CGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC CGAGACCACCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC < 41bp 1 0.499673130974991 1 0.130323320627213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947036 chr9:135947023 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_8412 1 0 0 0 0 exosome 1 0.500004047985683 1 0.999991904028634 hm5C_site_10954 DeepMRMD:1;iRNA_m5C:0.999991904028634 not specified not specified 10955 chr9 135947052 135947052 1 + G C rs547424025 135947032 + 135947012 135947052 41 ACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGG ACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGC < 41bp 1 0.333569123039221 1 0.378930151462555 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947032 chr9:135947052 synonymous SNV . 0 41 hm5C_associated_SNPs_8413 0 0 1 0 0 exosome 1 0.500231839986637 1 0.999536320026726 hm5C_site_10955 DeepMRMD:1;iRNA_m5C:0.999536320026726 10956 chr9 135947052 135947052 1 + G C rs547424025 135947033 + 135947013 135947053 41 CTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGG CTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGCG < 41bp 1 0.480291887148484 1 0.241748154163361 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947033 chr9:135947052 synonymous SNV . 0 40 hm5C_associated_SNPs_8414 0 0 1 0 0 exosome 1 0.500231644529241 1 0.999536710941518 hm5C_site_10956 DeepMRMD:1;iRNA_m5C:0.999536710941518 10957 chr9 135947052 135947052 1 + G C rs547424025 135947035 + 135947015 135947055 41 CCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC CCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGCGCC < 41bp 1 0.275971674593062 1 0.105942100286484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947035 chr9:135947052 synonymous SNV . 0 38 hm5C_associated_SNPs_8415 0 0 1 0 0 exosome 1 0.500231613967811 1 0.999536772064378 hm5C_site_10957 DeepMRMD:1;iRNA_m5C:0.999536772064378 10958 chr9 135947052 135947052 1 + G C rs547424025 135947036 + 135947016 135947056 41 CGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC CGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGCGCCC < 41bp 1 0.535373023210282 1 0.19563564658165 experiment 0.929253953579436 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947036 chr9:135947052 synonymous SNV . 0 37 hm5C_associated_SNPs_8416 0 0 1 0 0 exosome 1 0.500231643267861 1 0.999536713464278 hm5C_site_10958 DeepMRMD:1;iRNA_m5C:0.999536713464278 10959 chr9 135947052 135947052 1 + G C rs547424025 135947046 + 135947026 135947066 41 CCCGTGCCGCCCACGGGTGACTCCGGGGCCCCCCCTGTGCC CCCGTGCCGCCCACGGGTGACTCCGGCGCCCCCCCTGTGCC < 41bp 1 0.67835732459027 1 0.710643708705902 experiment 0.643285350819461 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947046 chr9:135947052 synonymous SNV . 0 27 hm5C_associated_SNPs_8417 0 0 1 0 0 exosome 1 0.500134694469979 0.578712582588196 0.999730611060042 hm5C_site_10959 DeepMRMD:0.578712582588196;iRNA_m5C:0.999730611060042 10960 chr9 136216882 136216882 1 + G A rs7700 136216873 + 136216853 136216893 41 AAGGCTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACC AAGGCTGCTGGCAAAGGGGACGTCCCAACAAAGAGACCACC < 41bp 1 0.118968629328322 1 0.38500314950943 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216873 chr9:136216882 synonymous SNV . 0 30 hm5C_associated_SNPs_8421 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10960 DeepMRMD:1;iRNA_m5C:0.999536712157815 10961 chr9 136216882 136216882 1 + G A rs7700 136216877 + 136216857 136216897 41 CTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACCTGTC CTGCTGGCAAAGGGGACGTCCCAACAAAGAGACCACCTGTC < 41bp 1 0.11872207491589 1 0.0730959177017212 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216877 chr9:136216882 synonymous SNV . 0 26 hm5C_associated_SNPs_8422 0 0 1 0 1 Cytosol 1 0.500231643921008 1 0.999536712157983 hm5C_site_10961 DeepMRMD:1;iRNA_m5C:0.999536712157983 10962 chr9 136216971 136216971 1 + T C rs148805269 136216975 + 136216955 136216995 41 GTGATGTAAAATTTCTTGGCCTGAAATTACTGTGAAGAGTA GTGATGTAAAATTTCTCGGCCTGAAATTACTGTGAAGAGTA < 41bp 1 0.358020426960799 1 0.0752498507499695 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216975 chr9:136216971 . . 0 17 hm5C_associated_SNPs_8424 0 0 1 5 0 unknown 1 0.500231642248405 1 0.99953671550319 hm5C_site_10962 DeepMRMD:1;iRNA_m5C:0.99953671550319 10963 chr9 136216971 136216971 1 + T C rs148805269 136216984 + 136216964 136217004 41 AATTTCTTGGCCTGAAATTACTGTGAAGAGTAAAACCGAGC AATTTCTCGGCCTGAAATTACTGTGAAGAGTAAAACCGAGC < 41bp 1 0.488002567023601 1 0.206247538328171 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216984 chr9:136216971 . . 0 8 hm5C_associated_SNPs_8425 0 0 1 5 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_10963 DeepMRMD:1;iRNA_m5C:0.999536712157815 10964 chr9 136216994 136216994 1 + T A rs371032790 136216975 + 136216955 136216995 41 GTGATGTAAAATTTCTTGGCCTGAAATTACTGTGAAGAGTA GTGATGTAAAATTTCTTGGCCTGAAATTACTGTGAAGAGAA < 41bp 1 0.423911347235772 1 0.164913266897202 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216975 chr9:136216994 . . 0 40 hm5C_associated_SNPs_8426 0 0 1 0 0 unknown 1 0.500228463551967 1 0.999543072896065 hm5C_site_10964 DeepMRMD:1;iRNA_m5C:0.999543072896065 10965 chr9 136216994 136216994 1 + T A rs371032790 136216984 + 136216964 136217004 41 AATTTCTTGGCCTGAAATTACTGTGAAGAGTAAAACCGAGC AATTTCTTGGCCTGAAATTACTGTGAAGAGAAAAACCGAGC < 41bp 1 0.600640457965948 1 0.339084088802338 experiment 0.798719084068104 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136216984 chr9:136216994 . . 0 31 hm5C_associated_SNPs_8427 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_10965 DeepMRMD:1;iRNA_m5C:0.999536712157818 10966 chr9 136216994 136216994 1 + T A rs371032790 136217000 + 136216980 136217020 41 ATTACTGTGAAGAGTAAAACCGAGCTTTTTAACACTGAGTC ATTACTGTGAAGAGAAAAACCGAGCTTTTTAACACTGAGTC < 41bp 1 0.588690042778085 1 0.457859873771667 experiment 0.82261991444383 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136217000 chr9:136216994 . . 0 15 hm5C_associated_SNPs_8428 0 0 1 0 0 unknown 1 0.500231753327397 1 0.999536493345207 hm5C_site_10966 DeepMRMD:1;iRNA_m5C:0.999536493345207 10967 chr9 136216994 136216994 1 + T A rs371032790 136217004 + 136216984 136217024 41 CTGTGAAGAGTAAAACCGAGCTTTTTAACACTGAGTCAGCA CTGTGAAGAGAAAAACCGAGCTTTTTAACACTGAGTCAGCA < 41bp 1 0.0744938933828973 1 0.0467520952224731 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136217004 chr9:136216994 . . 0 11 hm5C_associated_SNPs_8429 0 0 1 0 0 unknown 1 0.500231772981175 1 0.999536454037649 hm5C_site_10967 DeepMRMD:1;iRNA_m5C:0.999536454037649 10968 chr9 136216994 136216994 1 + T A rs371032790 136217014 + 136216994 136217034 41 TAAAACCGAGCTTTTTAACACTGAGTCAGCAGCTGAGCCCA AAAAACCGAGCTTTTTAACACTGAGTCAGCAGCTGAGCCCA < 41bp 1 0.671394567633726 1 0.296855062246323 experiment 0.657210864732548 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36B ENSG00000200831 ncRNA_exonic Human snoRNA chr9:136217014 chr9:136216994 . . 0 1 hm5C_associated_SNPs_8430 0 0 1 0 0 unknown 1 0.500231645000784 1 0.999536709998431 hm5C_site_10968 DeepMRMD:1;iRNA_m5C:0.999536709998431 10969 chr9 136217376 136217376 1 + T A rs79897455 136217358 + 136217338 136217378 41 TTCAACCTTGAAGTGCGAATCCATGAGCTTTTTAACCCTGA TTCAACCTTGAAGTGCGAATCCATGAGCTTTTTAACCCAGA < 41bp 1 0.0890256776323992 1 0.411190867424011 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36A ENSG00000199744 ncRNA_exonic Human snoRNA chr9:136217358 chr9:136217376 . . 0 39 hm5C_associated_SNPs_8431 0 0 1 1 0 unknown 1 0.500231796012412 1 0.999536407975177 hm5C_site_10969 DeepMRMD:1;iRNA_m5C:0.999536407975177 10970 chr9 136217376 136217376 1 + T A rs79897455 136217365 + 136217345 136217385 41 TTGAAGTGCGAATCCATGAGCTTTTTAACCCTGAGCAATTG TTGAAGTGCGAATCCATGAGCTTTTTAACCCAGAGCAATTG < 41bp 1 0.0599078348523367 1 0.0569513738155365 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36A ENSG00000199744 ncRNA_exonic Human snoRNA chr9:136217365 chr9:136217376 . . 0 32 hm5C_associated_SNPs_8432 0 0 1 1 0 unknown 1 0.500229352979796 1 0.999541294040407 hm5C_site_10970 DeepMRMD:1;iRNA_m5C:0.999541294040407 10971 chr9 136217376 136217376 1 + T A rs79897455 136217373 + 136217353 136217393 41 CGAATCCATGAGCTTTTTAACCCTGAGCAATTGTTACAAGC CGAATCCATGAGCTTTTTAACCCAGAGCAATTGTTACAAGC < 41bp 1 0.203329749441616 1 0.133297890424728 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD36A ENSG00000199744 ncRNA_exonic Human snoRNA chr9:136217373 chr9:136217376 . . 0 24 hm5C_associated_SNPs_8433 0 0 1 1 0 unknown 1 0.500231227193311 1 0.999537545613378 hm5C_site_10971 DeepMRMD:1;iRNA_m5C:0.999537545613378 10972 chr9 136892919 136892919 1 + A G rs115257516 136892908 + 136892888 136892928 41 TTCCAAGCATTTGCGGCCCACTGGCCAGTGCATCCAAAACA TTCCAAGCATTTGCGGCCCACTGGCCAGTGCGTCCAAAACA < 41bp 1 0.33659091276994 1 0.114639431238174 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LINC00094 ENSG00000235106 ncRNA_exonic Human protein_coding chr9:136892908 chr9:136892919 . . 0 32 hm5C_associated_SNPs_8434 0 0 1 0 0 exosome 1 0.500231643921095 1 0.999536712157809 hm5C_site_10972 DeepMRMD:1;iRNA_m5C:0.999536712157809 10973 chr9 137001224 137001224 1 + G C rs531170907 137001222 + 137001202 137001242 41 GCGCCCCCGCCGCCTGGCGCCCGCCCGAGCTGCCGCCTTGT GCGCCCCCGCCGCCTGGCGCCCCCCCGAGCTGCCGCCTTGT < 41bp 1 0.170027142309974 1 0.0345216691493988 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR5 ENSG00000196363 UTR5 Human protein_coding chr9:137001222 chr9:137001224 . . 0 23 hm5C_associated_SNPs_8435 0 0 0 0 1 Cytosol 1 0.500231643885964 1 0.999536712228072 hm5C_site_10973 DeepMRMD:1;iRNA_m5C:0.999536712228072 10974 chr9 137001224 137001224 1 + G C rs531170907 137001227 + 137001207 137001247 41 CCCGCCGCCTGGCGCCCGCCCGAGCTGCCGCCTTGTCGAGC CCCGCCGCCTGGCGCCCCCCCGAGCTGCCGCCTTGTCGAGC < 41bp 1 0.6804024803166 1 0.339093446731567 experiment 0.6391950393668 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR5 ENSG00000196363 UTR5 Human protein_coding chr9:137001227 chr9:137001224 . . 0 18 hm5C_associated_SNPs_8436 0 0 0 0 1 Cytosol 1 0.500231643920848 1 0.999536712158305 hm5C_site_10974 DeepMRMD:1;iRNA_m5C:0.999536712158305 10975 chr9 137004956 137004956 1 + C G rs189773125 137004936 + 137004916 137004956 41 TCCCTGTTCTGCATCTCGCTCAACAGACTGCCTCTGTCACC TCCCTGTTCTGCATCTCGCTCAACAGACTGCCTCTGTCACG < 41bp 1 0.298861638981883 1 0.285080999135971 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR5 ENSG00000196363 UTR5 Human protein_coding chr9:137004936 chr9:137004956 . . 0 41 hm5C_associated_SNPs_8437 0 0 1 0 1 Cytosol 1 0.500231650553518 1 0.999536698892965 hm5C_site_10975 DeepMRMD:1;iRNA_m5C:0.999536698892965 10976 chr9 137004956 137004956 1 + C G rs189773125 137004939 + 137004919 137004959 41 CTGTTCTGCATCTCGCTCAACAGACTGCCTCTGTCACCGGG CTGTTCTGCATCTCGCTCAACAGACTGCCTCTGTCACGGGG < 41bp 1 0.0858070036284431 1 0.68273663520813 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR5 ENSG00000196363 UTR5 Human protein_coding chr9:137004939 chr9:137004956 . . 0 38 hm5C_associated_SNPs_8438 0 0 1 0 1 Cytosol 1 0.50023164555924 0.63452672958374 0.999536708881519 hm5C_site_10976 DeepMRMD:0.63452672958374;iRNA_m5C:0.999536708881519 10977 chr9 137024945 137024945 1 + G C rs564985619 137024952 + 137024932 137024972 41 TCAGTCTTGTTCTGGGGGGACGGCCCACTCCGGGGAGGGGG TCAGTCTTGTTCTCGGGGGACGGCCCACTCCGGGGAGGGGG < 41bp 1 0.497265564522929 1 0.427969425916672 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR5 ENSG00000196363 UTR3 Human protein_coding chr9:137024952 chr9:137024945 . . 0 14 hm5C_associated_SNPs_8439 0 0 1 0 0 Cytosol 1 0.500231643921539 1 0.999536712156923 hm5C_site_10977 DeepMRMD:1;iRNA_m5C:0.999536712156923 10978 chr9 137299212 137299212 1 + A G rs3132298 137299230 + 137299210 137299250 41 CCAGGCTGGCTGGCAGGCTGCAGCGGGAAGCGCCTGTGGGT CCGGGCTGGCTGGCAGGCTGCAGCGGGAAGCGCCTGTGGGT < 41bp 1 0.558223728404846 1 0.841921329498291 experiment 0.883552543190307 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RXRA ENSG00000186350 UTR5 Human protein_coding chr9:137299230 chr9:137299212 . . 0 3 hm5C_associated_SNPs_8440 0 0 1 0 0 Cytosol 1 0.500231641908712 0.316157341003418 0.999536716182576 hm5C_site_10978 DeepMRMD:0.316157341003418;iRNA_m5C:0.999536716182576 10979 chr9 137314991 137314991 1 + C G rs34767635 137314987 + 137314967 137315007 41 AAGGGGGTGTGAGGGGCGTGCTGACTGGGGCTGGTTCTTGC AAGGGGGTGTGAGGGGCGTGCTGAGTGGGGCTGGTTCTTGC < 41bp 1 0.33370110324448 1 0.712501704692841 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RXRA ENSG00000186350 intronic Human protein_coding chr9:137314987 chr9:137314991 . . 0 25 hm5C_associated_SNPs_8441 0 0 1 0 0 Cytosol 1 0.500232387570976 0.574996590614318 0.999535224858048 hm5C_site_10979 DeepMRMD:0.574996590614318;iRNA_m5C:0.999535224858048 10980 chr9 137323820 137323820 1 + C G rs141382843 137323830 + 137323810 137323850 41 GCTGCCTGCGCGCCATCGTCCTCTTTAACCCTGGTATGGCC GCTGCCTGCGGGCCATCGTCCTCTTTAACCCTGGTATGGCC < 41bp 1 0.113326157204103 1 0.316991686820984 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RXRA ENSG00000186350 CDS Human protein_coding chr9:137323830 chr9:137323820 synonymous SNV . 0 11 hm5C_associated_SNPs_8442 0 0 1 0 1 Cytosol 1 0.500231643921104 1 0.999536712157793 hm5C_site_10980 DeepMRMD:1;iRNA_m5C:0.999536712157793 10981 chr9 137330379 137330379 1 + G A rs35478239 137330373 + 137330353 137330393 41 TGGCCCCCTGCCCGATCCACCGTCCTGAGGCAGAGTGTTGA TGGCCCCCTGCCCGATCCACCGTCCTAAGGCAGAGTGTTGA < 41bp 1 0.0377760150101195 1 0.164435058832169 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RXRA ENSG00000186350;ENSG00000223795 intergenic Human other chr9:137330373 chr9:137330379 . . 0 27 hm5C_associated_SNPs_8443 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_10981 DeepMRMD:1;iRNA_m5C:0.999536712157815 10982 chr9 137330679 137330679 1 + C G rs555291776 137330690 + 137330670 137330710 41 GAACTTTGTCGTTTCCGGCGCTGGCTGGCTGGCTGGCTGGC GAACTTTGTGGTTTCCGGCGCTGGCTGGCTGGCTGGCTGGC < 41bp 1 0.210245836534373 1 0.404411226511002 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RXRA ENSG00000186350;ENSG00000223795 intergenic Human other chr9:137330690 chr9:137330679 . . 0 10 hm5C_associated_SNPs_8444 0 0 0 0 0 Cytosol 1 0.50023169134814 1 0.999536617303721 hm5C_site_10982 DeepMRMD:1;iRNA_m5C:0.999536617303721 10983 chr9 137331485 137331485 1 + A T rs34390326 137331465 + 137331445 137331485 41 GAGCCCCTCCCCGTGGGGCACCCAGGAGGGCCCTGCCGGAA GAGCCCCTCCCCGTGGGGCACCCAGGAGGGCCCTGCCGGAT < 41bp 1 0.295944311993853 1 0.328847229480743 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RXRA ENSG00000186350;ENSG00000223795 intergenic Human other chr9:137331465 chr9:137331485 . . 0 41 hm5C_associated_SNPs_8445 0 0 1 0 0 Cytosol 1 0.500231643697089 1 0.999536712605822 hm5C_site_10983 DeepMRMD:1;iRNA_m5C:0.999536712605822 10984 chr9 137533785 137533785 1 + G A rs574222596 137533790 + 137533770 137533810 41 AGGAGGCGAGGGCGAGCTAGCCCAGCGGGGTCCCGGCCGCC AGGAGGCGAGGGCGAACTAGCCCAGCGGGGTCCCGGCCGCC < 41bp 1 0.286668163685527 1 0.319375574588776 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL5A1 ENSG00000130635 UTR5 Human protein_coding chr9:137533790 chr9:137533785 . . 0 16 hm5C_associated_SNPs_8446 0 0 0 0 0 Nucleus 1 0.500231643921177 1 0.999536712157646 hm5C_site_10984 DeepMRMD:1;iRNA_m5C:0.999536712157646 10985 chr9 137593098 137593098 1 + C T rs116715381 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTCCTTGACCGCAG < 41bp 1 0.345742565300989 1 0.272157967090607 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593098 synonymous SNV . 0 33 hm5C_associated_SNPs_8447 4 0 1 0 2 Nucleus 1 0.500231643920953 1 0.999536712158094 hm5C_site_10985 DeepMRMD:1;iRNA_m5C:0.999536712158094 not specified not specified 10986 chr9 137593099 137593099 1 + G A rs138579182 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTCCTCAACCGCAG < 41bp 1 0.303220987650922 1 0.17741185426712 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593099 nonsynonymous SNV 0.112 0 34 hm5C_associated_SNPs_8448 3 0 1 0 2 Nucleus 1 0.500231643921034 1 0.999536712157932 hm5C_site_10986 DeepMRMD:1;iRNA_m5C:0.999536712157932 not specified not specified 10987 chr9 137734416 137734416 1 + C T rs12722 137734435 + 137734415 137734455 41 ACGCGCCCCGGGAGCGGGGCCATGCCTCCAGCCCCCCAGCT ATGCGCCCCGGGAGCGGGGCCATGCCTCCAGCCCCCCAGCT < 41bp 1 0.190137020726785 1 0.594657838344574 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC101448202 ENSG00000130635 UTR3 Human protein_coding chr9:137734435 chr9:137734416 . . 0 2 hm5C_associated_SNPs_8449 1 0 0 0 0 unknown 1 0.500231643921093 0.810684323310852 0.999536712157814 hm5C_site_10987 DeepMRMD:0.810684323310852;iRNA_m5C:0.999536712157814 Ehlers-Danlos syndrome, type 7A Ehlers-Danlos syndrome, type 7A 10988 chr9 137734418 137734418 1 + C A rs372857096 137734435 + 137734415 137734455 41 ACGCGCCCCGGGAGCGGGGCCATGCCTCCAGCCCCCCAGCT ACGAGCCCCGGGAGCGGGGCCATGCCTCCAGCCCCCCAGCT < 41bp 1 0.190051276452921 1 0.618688464164734 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC101448202 ENSG00000130635 UTR3 Human protein_coding chr9:137734435 chr9:137734418 . . 0 4 hm5C_associated_SNPs_8450 0 0 0 0 0 unknown 1 0.500231643909358 0.762623071670532 0.999536712181284 hm5C_site_10988 DeepMRMD:0.762623071670532;iRNA_m5C:0.999536712181284 10989 chr9 137734429 137734429 1 + C T rs567044132 137734435 + 137734415 137734455 41 ACGCGCCCCGGGAGCGGGGCCATGCCTCCAGCCCCCCAGCT ACGCGCCCCGGGAGTGGGGCCATGCCTCCAGCCCCCCAGCT < 41bp 1 0.191772738388091 1 0.583637237548828 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC101448202 ENSG00000130635 UTR3 Human protein_coding chr9:137734435 chr9:137734429 . . 0 15 hm5C_associated_SNPs_8451 0 0 0 0 0 unknown 1 0.50023164392111 0.832725524902344 0.99953671215778 hm5C_site_10989 DeepMRMD:0.832725524902344;iRNA_m5C:0.99953671215778 10990 chr9 137734432 137734432 1 + G A rs114171895 137734435 + 137734415 137734455 41 ACGCGCCCCGGGAGCGGGGCCATGCCTCCAGCCCCCCAGCT ACGCGCCCCGGGAGCGGAGCCATGCCTCCAGCCCCCCAGCT < 41bp 1 0.255326575858261 1 0.503295660018921 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC101448202 ENSG00000130635 UTR3 Human protein_coding chr9:137734435 chr9:137734432 . . 0 18 hm5C_associated_SNPs_8452 1 0 0 0 0 unknown 1 0.500231643919714 0.993408679962158 0.999536712160572 hm5C_site_10990 DeepMRMD:0.993408679962158;iRNA_m5C:0.999536712160572 Ehlers-Danlos syndrome, type 7A Ehlers-Danlos syndrome, type 7A 10991 chr9 137734451 137734451 1 + C G rs376087882 137734435 + 137734415 137734455 41 ACGCGCCCCGGGAGCGGGGCCATGCCTCCAGCCCCCCAGCT ACGCGCCCCGGGAGCGGGGCCATGCCTCCAGCCCCCGAGCT < 41bp 1 0.192650217815917 1 0.538609147071838 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC101448202 ENSG00000130635 UTR3 Human protein_coding chr9:137734435 chr9:137734451 . . 0 37 hm5C_associated_SNPs_8453 1 0 0 0 0 unknown 1 0.500231643921125 0.922781705856324 0.999536712157749 hm5C_site_10991 DeepMRMD:0.922781705856324;iRNA_m5C:0.999536712157749 Ehlers-Danlos syndrome, type 7A Ehlers-Danlos syndrome, type 7A 10992 chr9 137735592 137735592 1 + G A rs10895 137735590 + 137735570 137735610 41 ATTTCTGTGTTTGTTCCAAGCCGTTCAGTCATGCCATGCGC ATTTCTGTGTTTGTTCCAAGCCATTCAGTCATGCCATGCGC < 41bp 1 0.0388083582153156 1 0.0289848744869232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LOC101448202 ENSG00000130635 UTR3 Human protein_coding chr9:137735590 chr9:137735592 . . 0 23 hm5C_associated_SNPs_8454 1 0 1 0 0 unknown 1 0.500231643940495 1 0.999536712119009 hm5C_site_10992 DeepMRMD:1;iRNA_m5C:0.999536712119009 Ehlers-Danlos syndrome, type 7A Ehlers-Danlos syndrome, type 7A 10993 chr9 137735592 137735592 1 + G A rs10895 137735591 + 137735571 137735611 41 TTTCTGTGTTTGTTCCAAGCCGTTCAGTCATGCCATGCGCT TTTCTGTGTTTGTTCCAAGCCATTCAGTCATGCCATGCGCT < 41bp 1 0.0154791904982982 1 0.0161564648151398 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LOC101448202 ENSG00000130635 UTR3 Human protein_coding chr9:137735591 chr9:137735592 . . 0 22 hm5C_associated_SNPs_8455 1 0 1 0 0 unknown 1 0.500231648716026 1 0.999536702567948 hm5C_site_10993 DeepMRMD:1;iRNA_m5C:0.999536702567948 Ehlers-Danlos syndrome, type 7A Ehlers-Danlos syndrome, type 7A 10994 chr9 138377569 138377569 1 + C G rs148457172 138377552 + 138377532 138377572 41 CCAACTCCGAGAGGAGAGAGCGCCTGACCCTCCCGCACACA CCAACTCCGAGAGGAGAGAGCGCCTGACCCTCCCGCAGACA < 41bp 1 0.439206021343711 1 0.191214144229889 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138377552 chr9:138377569 nonsynonymous SNV 0.002 0 38 hm5C_associated_SNPs_8456 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_10994 DeepMRMD:1;iRNA_m5C:0.999536712157818 10995 chr9 138378819 138378819 1 + C A rs114046505 138378822 + 138378802 138378842 41 GGCCCAGCTCCCAGCCCCGGCTCCCTGTCTGATGACAGCAG GGCCCAGCTCCCAGCCCAGGCTCCCTGTCTGATGACAGCAG < 41bp 1 0.17700123541039 1 0.332958668470383 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378822 chr9:138378819 synonymous SNV . 0 18 hm5C_associated_SNPs_8457 0 0 0 0 0 Ribosome 1 0.500231632386154 1 0.999536735227692 hm5C_site_10995 DeepMRMD:1;iRNA_m5C:0.999536735227692 10996 chr9 138378820 138378820 1 + G A rs142884898 138378822 + 138378802 138378842 41 GGCCCAGCTCCCAGCCCCGGCTCCCTGTCTGATGACAGCAG GGCCCAGCTCCCAGCCCCAGCTCCCTGTCTGATGACAGCAG < 41bp 1 0.159936761906103 1 0.404726892709732 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378822 chr9:138378820 nonsynonymous SNV 0.000 0 19 hm5C_associated_SNPs_8458 0 0 0 0 0 Ribosome 1 0.500230527051477 1 0.999538945897047 hm5C_site_10996 DeepMRMD:1;iRNA_m5C:0.999538945897047 10997 chr9 138378954 138378954 1 + T C rs61735037 138378942 + 138378922 138378962 41 TCAGAAGTTCAGGCAGAGGGCCCCACCGCTCTTGGGACAGG TCAGAAGTTCAGGCAGAGGGCCCCACCGCTCTCGGGACAGG < 41bp 1 0.271832067388826 1 0.104690223932266 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378942 chr9:138378954 synonymous SNV . 0 33 hm5C_associated_SNPs_8459 0 0 1 0 0 Ribosome 1 0.500231644364616 1 0.999536711270768 hm5C_site_10997 DeepMRMD:1;iRNA_m5C:0.999536711270768 10998 chr9 138378954 138378954 1 + T C rs61735037 138378943 + 138378923 138378963 41 CAGAAGTTCAGGCAGAGGGCCCCACCGCTCTTGGGACAGGG CAGAAGTTCAGGCAGAGGGCCCCACCGCTCTCGGGACAGGG < 41bp 1 0.0178844787068832 1 0.0539624691009521 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378943 chr9:138378954 synonymous SNV . 0 32 hm5C_associated_SNPs_8460 0 0 1 0 0 Ribosome 1 0.500231643904551 1 0.999536712190898 hm5C_site_10998 DeepMRMD:1;iRNA_m5C:0.999536712190898 10999 chr9 138378954 138378954 1 + T C rs61735037 138378944 + 138378924 138378964 41 AGAAGTTCAGGCAGAGGGCCCCACCGCTCTTGGGACAGGGG AGAAGTTCAGGCAGAGGGCCCCACCGCTCTCGGGACAGGGG < 41bp 1 0.0402689871886152 1 0.0716733038425446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378944 chr9:138378954 synonymous SNV . 0 31 hm5C_associated_SNPs_8461 0 0 1 0 0 Ribosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_10999 DeepMRMD:1;iRNA_m5C:0.999536712157811 11000 chr9 138378954 138378954 1 + T C rs61735037 138378945 + 138378925 138378965 41 GAAGTTCAGGCAGAGGGCCCCACCGCTCTTGGGACAGGGGG GAAGTTCAGGCAGAGGGCCCCACCGCTCTCGGGACAGGGGG < 41bp 1 0.375143898395001 1 0.0814569294452667 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378945 chr9:138378954 synonymous SNV . 0 30 hm5C_associated_SNPs_8462 0 0 1 0 0 Ribosome 1 0.500231643921111 1 0.999536712157779 hm5C_site_11000 DeepMRMD:1;iRNA_m5C:0.999536712157779 11001 chr9 138378954 138378954 1 + T C rs61735037 138378966 + 138378946 138378986 41 ACCGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCT ACCGCTCTCGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCT < 41bp 1 0.0837419245075373 1 0.135606646537781 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378966 chr9:138378954 synonymous SNV . 0 9 hm5C_associated_SNPs_8463 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11001 DeepMRMD:1;iRNA_m5C:0.999536712157815 11002 chr9 138378954 138378954 1 + T C rs61735037 138378967 + 138378947 138378987 41 CCGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTG CCGCTCTCGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTG < 41bp 1 0.0950694722136219 1 0.0668785572052002 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378967 chr9:138378954 synonymous SNV . 0 8 hm5C_associated_SNPs_8464 0 0 1 0 0 Ribosome 1 0.500231644997194 1 0.999536710005612 hm5C_site_11002 DeepMRMD:1;iRNA_m5C:0.999536710005612 11003 chr9 138378954 138378954 1 + T C rs61735037 138378968 + 138378948 138378988 41 CGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTGT CGCTCTCGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTGT < 41bp 1 0.364443677791368 1 0.481549650430679 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378968 chr9:138378954 synonymous SNV . 0 7 hm5C_associated_SNPs_8465 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11003 DeepMRMD:1;iRNA_m5C:0.999536712157815 11004 chr9 138395661 138395661 1 + C T rs529195453 138395653 + 138395633 138395673 41 TCTTTGGCCCCACGGTCCGCCTGCCGGACCTCATCATCTTC TCTTTGGCCCCACGGTCCGCCTGCCGGATCTCATCATCTTC < 41bp 1 0.442064081645324 1 0.153748869895935 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MRPS2 ENSG00000122140 CDS Human protein_coding chr9:138395653 chr9:138395661 synonymous SNV . 0 29 hm5C_associated_SNPs_8466 0 0 1 0 0 Cytosol 1 0.500231643921089 1 0.999536712157821 hm5C_site_11004 DeepMRMD:1;iRNA_m5C:0.999536712157821 11005 chr9 138396251 138396251 1 + A G rs535 138396249 + 138396229 138396269 41 GACCTCAGTGGCTGGTATGGCCAAGCTGCTAGAAGATGCTG GACCTCAGTGGCTGGTATGGCCGAGCTGCTAGAAGATGCTG < 41bp 1 0.654638163519505 1 0.275636553764343 experiment 0.690723672960991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LOC101928525 ENSG00000226706 ncRNA_intronic Human antisense chr9:138396249 chr9:138396251 . . 0 23 hm5C_associated_SNPs_8467 0 0 1 7 0 unknown 1 0.500231658409723 1 0.999536683180555 hm5C_site_11005 DeepMRMD:1;iRNA_m5C:0.999536683180555 11006 chr9 139228931 139228931 1 + G A rs146709689 139228915 + 139228895 139228935 41 TCTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGG TCTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCACTGG < 41bp 1 0.141034436755298 1 0.0588949620723724 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228915 chr9:139228931 synonymous SNV . 0 37 hm5C_associated_SNPs_8469 0 0 1 0 1 Cytosol 1 0.500231643921259 1 0.999536712157482 hm5C_site_11006 DeepMRMD:1;iRNA_m5C:0.999536712157482 11007 chr9 139228931 139228931 1 + G A rs146709689 139228916 + 139228896 139228936 41 CTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGGA CTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCACTGGA < 41bp 1 0.4466105931923 1 0.108124136924744 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228916 chr9:139228931 synonymous SNV . 0 36 hm5C_associated_SNPs_8470 0 0 1 0 1 Cytosol 1 0.500231625744095 1 0.99953674851181 hm5C_site_11007 DeepMRMD:1;iRNA_m5C:0.99953674851181 11008 chr9 139234206 139234206 1 + C T rs141313816 139234211 + 139234191 139234231 41 CCTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGCGCAGG CCTGGGAAATGCCTATGTGTCCATGGGGCGCCCAGCGCAGG < 41bp 1 0.265236598217137 1 0.179475367069244 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139234211 chr9:139234206 synonymous SNV . 0 16 hm5C_associated_SNPs_8471 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11008 DeepMRMD:1;iRNA_m5C:0.999536712157815 11009 chr9 139234206 139234206 1 + C T rs141313816 139234212 + 139234192 139234232 41 CTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGCGCAGGC CTGGGAAATGCCTATGTGTCCATGGGGCGCCCAGCGCAGGC < 41bp 1 0.699713171237181 1 0.391796946525574 experiment 0.600573657525638 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139234212 chr9:139234206 synonymous SNV . 0 15 hm5C_associated_SNPs_8472 0 0 1 0 1 Cytosol 1 0.500231643920948 1 0.999536712158105 hm5C_site_11009 DeepMRMD:1;iRNA_m5C:0.999536712158105 11010 chr9 139565141 139565141 1 + G A rs143790661 139565125 + 139565105 139565145 41 TCGTACCGTGAGTAATAATGCGCCGTCCACGGCACCGCATC TCGTACCGTGAGTAATAATGCGCCGTCCACGGCACCACATC < 41bp 1 0.607006653077346 1 0.602226793766022 experiment 0.785986693845308 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EGFL7 ENSG00000172889 intronic Human protein_coding chr9:139565125 chr9:139565141 . . 0 37 hm5C_associated_SNPs_8476 0 0 0 0 0 Ribosome 1 0.500236927652333 0.795546412467956 0.999526144695334 hm5C_site_11010 DeepMRMD:0.795546412467956;iRNA_m5C:0.999526144695334 11011 chr9 139615549 139615549 1 + G A rs7029239 139615567 + 139615547 139615587 41 GGGAGCAGAGGGGCTGGACGCGGTGCCCTTCACGGGATGAC GGAAGCAGAGGGGCTGGACGCGGTGCCCTTCACGGGATGAC < 41bp 1 0.62749995640444 1 0.66868007183075 experiment 0.745000087191121 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control FAM69B ENSG00000165716 UTR5 Human protein_coding chr9:139615567 chr9:139615549 . . 0 3 hm5C_associated_SNPs_8477 0 0 0 0 0 chromatin 1 0.500231643919447 0.6626398563385 0.999536712161106 hm5C_site_11011 DeepMRMD:0.6626398563385;iRNA_m5C:0.999536712161106 11012 chr9 139615565 139615565 1 + C A rs145088187 139615567 + 139615547 139615587 41 GGGAGCAGAGGGGCTGGACGCGGTGCCCTTCACGGGATGAC GGGAGCAGAGGGGCTGGAAGCGGTGCCCTTCACGGGATGAC < 41bp 1 0.657315723375989 1 0.789228677749634 experiment 0.685368553248023 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control FAM69B ENSG00000165716 UTR5 Human protein_coding chr9:139615567 chr9:139615565 . . 0 19 hm5C_associated_SNPs_8478 0 0 0 0 0 chromatin 1 0.500230913273145 0.421542644500732 0.999538173453711 hm5C_site_11012 DeepMRMD:0.421542644500732;iRNA_m5C:0.999538173453711 11013 chr9 139615581 139615581 1 + G A rs73668362 139615567 + 139615547 139615587 41 GGGAGCAGAGGGGCTGGACGCGGTGCCCTTCACGGGATGAC GGGAGCAGAGGGGCTGGACGCGGTGCCCTTCACGAGATGAC < 41bp 1 0.616786585334575 1 0.749352693557739 experiment 0.76642682933085 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control FAM69B ENSG00000165716 UTR5 Human protein_coding chr9:139615567 chr9:139615581 . . 0 35 hm5C_associated_SNPs_8479 0 0 0 0 0 chromatin 1 0.500231625034885 0.501294612884522 0.99953674993023 hm5C_site_11013 DeepMRMD:0.501294612884522;iRNA_m5C:0.99953674993023 11014 chr9 139702384 139702384 1 + C G rs533267449 139702391 + 139702371 139702411 41 ACCCCTCCCGTCCCGCCGAGCCGGCGCCAAGATGGCGGCGC ACCCCTCCCGTCCGGCCGAGCCGGCGCCAAGATGGCGGCGC < 41bp 1 0.398875190411976 1 0.616852402687073 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CCDC183-AS1 ENSG00000273066 ncRNA_exonic Human processed_transcript chr9:139702391 chr9:139702384 . . 0 14 hm5C_associated_SNPs_8480 0 0 1 0 0 unknown 1 0.500231643868834 0.766295194625854 0.999536712262332 hm5C_site_11014 DeepMRMD:0.766295194625854;iRNA_m5C:0.999536712262332 11015 chr9 139702384 139702384 1 + C G rs533267449 139702395 + 139702375 139702415 41 CTCCCGTCCCGCCGAGCCGGCGCCAAGATGGCGGCGCTGAC CTCCCGTCCGGCCGAGCCGGCGCCAAGATGGCGGCGCTGAC < 41bp 1 0.569377556106798 1 0.291456520557404 experiment 0.861244887786404 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC183-AS1 ENSG00000273066 ncRNA_exonic Human processed_transcript chr9:139702395 chr9:139702384 . . 0 10 hm5C_associated_SNPs_8482 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11015 DeepMRMD:1;iRNA_m5C:0.999536712157815 11016 chr9 139702577 139702577 1 + G A rs377030067 139702562 + 139702542 139702582 41 GGCCTCCGGGGGGGCCGGGGCCGCCGGGACATGGTGCCAGT GGCCTCCGGGGGGGCCGGGGCCGCCGGGACATGGTACCAGT < 41bp 1 0.395587751830041 1 0.319463163614273 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC183-AS1 ENSG00000273066 ncRNA_exonic Human processed_transcript chr9:139702562 chr9:139702577 . . 0 36 hm5C_associated_SNPs_8484 0 0 1 0 0 unknown 1 0.50023165547514 1 0.99953668904972 hm5C_site_11016 DeepMRMD:1;iRNA_m5C:0.99953668904972 11017 chr9 139702577 139702577 1 + G A rs377030067 139702578 + 139702558 139702598 41 GGGGCCGCCGGGACATGGTGCCAGTCGCACCCCTTCCCCGC GGGGCCGCCGGGACATGGTACCAGTCGCACCCCTTCCCCGC < 41bp 1 0.38256159035609 1 0.199964046478271 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC183-AS1 ENSG00000273066 ncRNA_exonic Human processed_transcript chr9:139702578 chr9:139702577 . . 0 20 hm5C_associated_SNPs_8485 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11017 DeepMRMD:1;iRNA_m5C:0.999536712157815 11018 chr9 139728309 139728309 1 + G A rs145215909 139728307 + 139728287 139728327 41 GCAGTCAGACTTGTCCTGTGCCGGCACTGCTGGGGAGGCCC GCAGTCAGACTTGTCCTGTGCCAGCACTGCTGGGGAGGCCC < 41bp 1 0.0619401686405537 1 0.0896539688110352 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139728307 chr9:139728309 synonymous SNV . 0 23 hm5C_associated_SNPs_8486 0 0 1 0 0 chromatin 1 0.500231643927802 1 0.999536712144395 hm5C_site_11018 DeepMRMD:1;iRNA_m5C:0.999536712144395 11019 chr9 139730246 139730246 1 + C T rs550622599 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCATGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG < 41bp 1 0.545397845258683 1 0.850019097328186 experiment 0.909204309482635 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730246 nonsynonymous SNV 0.957 4 6 hm5C_associated_SNPs_8487 0 0 1 0 2 chromatin 1 0.500231643921731 0.299961805343628 0.999536712156537 hm5C_site_11019 DeepMRMD:0.299961805343628;iRNA_m5C:0.999536712156537 11020 chr9 139733464 139733464 1 + G A rs375638735 139733467 + 139733447 139733487 41 CGCTGCCTGCAGGCCCCGTCCCCAGTCAAGACATCACTCTT CGCTGCCTGCAGGCCCCATCCCCAGTCAAGACATCACTCTT < 41bp 1 0.260288989969225 1 0.68065482378006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139733467 chr9:139733464 nonsynonymous SNV 0.001 0 18 hm5C_associated_SNPs_8488 0 0 1 0 0 chromatin 1 0.500231640615472 0.63869035243988 0.999536718769055 hm5C_site_11020 DeepMRMD:0.63869035243988;iRNA_m5C:0.999536718769055 11021 chr9 139733481 139733481 1 + C A rs191514627 139733467 + 139733447 139733487 41 CGCTGCCTGCAGGCCCCGTCCCCAGTCAAGACATCACTCTT CGCTGCCTGCAGGCCCCGTCCCCAGTCAAGACATAACTCTT < 41bp 1 0.158982415831889 1 0.625841736793518 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139733467 chr9:139733481 synonymous SNV . 0 35 hm5C_associated_SNPs_8489 0 0 1 0 1 chromatin 1 0.500231643921459 0.748316526412964 0.999536712157081 hm5C_site_11021 DeepMRMD:0.748316526412964;iRNA_m5C:0.999536712157081 11022 chr9 139734272 139734272 1 + G A rs147124725 139734259 + 139734239 139734279 41 GCCTTCAGACTGAAGAATGACTCGGACCTCTTCGGGCTGGG GCCTTCAGACTGAAGAATGACTCGGACCTCTTCAGGCTGGG < 41bp 1 0.650525626709088 1 0.60437148809433 experiment 0.698948746581824 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734259 chr9:139734272 nonsynonymous SNV 0.037 4 34 hm5C_associated_SNPs_8490 0 0 1 0 1 chromatin 1 0.50023165765164 0.79125702381134 0.99953668469672 hm5C_site_11022 DeepMRMD:0.79125702381134;iRNA_m5C:0.99953668469672 11023 chr9 139734272 139734272 1 + G A rs147124725 139734265 + 139734245 139734285 41 AGACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGA AGACTGAAGAATGACTCGGACCTCTTCAGGCTGGGGCTGGA < 41bp 1 0.0493488430403426 1 0.0502026379108429 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734265 chr9:139734272 nonsynonymous SNV 0.037 4 28 hm5C_associated_SNPs_8491 0 0 1 0 1 chromatin 1 0.50023164392109 1 0.999536712157819 hm5C_site_11023 DeepMRMD:1;iRNA_m5C:0.999536712157819 11024 chr9 139734272 139734272 1 + G A rs147124725 139734266 + 139734246 139734286 41 GACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAG GACTGAAGAATGACTCGGACCTCTTCAGGCTGGGGCTGGAG < 41bp 1 0.105588589555133 1 0.107418358325958 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734266 chr9:139734272 nonsynonymous SNV 0.037 4 27 hm5C_associated_SNPs_8492 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_11024 DeepMRMD:1;iRNA_m5C:0.999536712157815 11025 chr9 139734272 139734272 1 + G A rs147124725 139734271 + 139734251 139734291 41 AAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAGGAGGC AAGAATGACTCGGACCTCTTCAGGCTGGGGCTGGAGGAGGC < 41bp 1 0.649013133019413 1 0.801381826400757 experiment 0.701973733961174 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734271 chr9:139734272 nonsynonymous SNV 0.037 4 22 hm5C_associated_SNPs_8493 0 0 1 0 1 chromatin 1 0.500231643921093 0.397236347198486 0.999536712157813 hm5C_site_11025 DeepMRMD:0.397236347198486;iRNA_m5C:0.999536712157813 11026 chr9 139734272 139734272 1 + G A rs147124725 139734292 + 139734272 139734312 41 GGGCTGGGGCTGGAGGAGGCCGGACCCAAGGAGAGCAGTGA AGGCTGGGGCTGGAGGAGGCCGGACCCAAGGAGAGCAGTGA < 41bp 1 0.218277131701349 1 0.739238500595093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734292 chr9:139734272 nonsynonymous SNV 0.037 4 1 hm5C_associated_SNPs_8494 0 0 1 0 1 chromatin 1 0.500231643921092 0.521522998809814 0.999536712157815 hm5C_site_11026 DeepMRMD:0.521522998809814;iRNA_m5C:0.999536712157815 11027 chr9 139747570 139747570 1 + G A rs145912281 139747567 + 139747547 139747587 41 CCAGCAGCAGGGTCCTCAGGCTGGGCCTGGGTCCCCAACCA CCAGCAGCAGGGTCCTCAGGCTGAGCCTGGGTCCCCAACCA < 41bp 1 0.550085108537621 1 0.606786131858826 experiment 0.899829782924757 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139747567 chr9:139747570 stopgain 0.614 0 24 hm5C_associated_SNPs_8495 0 0 1 0 2 chromatin 1 0.50023164389073 0.786427736282348 0.999536712218539 hm5C_site_11027 DeepMRMD:0.786427736282348;iRNA_m5C:0.999536712218539 11028 chr9 139747571 139747571 1 + G T rs147821303 139747567 + 139747547 139747587 41 CCAGCAGCAGGGTCCTCAGGCTGGGCCTGGGTCCCCAACCA CCAGCAGCAGGGTCCTCAGGCTGGTCCTGGGTCCCCAACCA < 41bp 1 0.584946161832458 1 0.470835328102112 experiment 0.830107676335085 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139747567 chr9:139747571 nonsynonymous SNV 0.664 0 25 hm5C_associated_SNPs_8496 0 0 1 0 2 chromatin 1 0.500231641681968 1 0.999536716636065 hm5C_site_11028 DeepMRMD:1;iRNA_m5C:0.999536716636065 11029 chr9 139887666 139887666 1 + G A rs555806618 139887676 + 139887656 139887696 41 CTGGCAAAACGCGTGTGGAGCCTGGAGCGGCGACTGGCAGG CTGGCAAAACACGTGTGGAGCCTGGAGCGGCGACTGGCAGG < 41bp 1 0.343937245677135 1 0.112923562526703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887676 chr9:139887666 nonsynonymous SNV 0.031 0 11 hm5C_associated_SNPs_8498 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_11029 DeepMRMD:1;iRNA_m5C:0.999536712157815 11030 chr9 139887667 139887667 1 + C T rs151088980 139887676 + 139887656 139887696 41 CTGGCAAAACGCGTGTGGAGCCTGGAGCGGCGACTGGCAGG CTGGCAAAACGTGTGTGGAGCCTGGAGCGGCGACTGGCAGG < 41bp 1 0.32263503577652 1 0.235451877117157 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887676 chr9:139887667 synonymous SNV . 0 12 hm5C_associated_SNPs_8499 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_11030 DeepMRMD:1;iRNA_m5C:0.999536712157815 11031 chr9 139887803 139887803 1 + G C rs141325653 139887795 + 139887775 139887815 41 CCATGGGCTTTCCTCCCCAGCTGCAGAAGAGACAGCTGTCA CCATGGGCTTTCCTCCCCAGCTGCAGAACAGACAGCTGTCA < 41bp 1 0.669528583045454 1 0.491174846887589 experiment 0.660942833909092 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887795 chr9:139887803 nonsynonymous SNV 0.151 0 29 hm5C_associated_SNPs_8500 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11031 DeepMRMD:1;iRNA_m5C:0.999536712157815 11032 chr9 139887803 139887803 1 + G C rs141325653 139887798 + 139887778 139887818 41 TGGGCTTTCCTCCCCAGCTGCAGAAGAGACAGCTGTCAGCC TGGGCTTTCCTCCCCAGCTGCAGAACAGACAGCTGTCAGCC < 41bp 1 0.644249745843037 1 0.762189388275146 experiment 0.711500508313926 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887798 chr9:139887803 nonsynonymous SNV 0.151 0 26 hm5C_associated_SNPs_8501 0 0 1 0 2 Ribosome 1 0.500231646572452 0.475621223449708 0.999536706855097 hm5C_site_11032 DeepMRMD:0.475621223449708;iRNA_m5C:0.999536706855097 11033 chr9 139887803 139887803 1 + G C rs141325653 139887814 + 139887794 139887834 41 GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCCG GCTGCAGAACAGACAGCTGTCAGCCCGAGGAAGAGCCCCCG < 41bp 1 0.482148086200247 1 0.620062053203583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887814 chr9:139887803 nonsynonymous SNV 0.151 0 10 hm5C_associated_SNPs_8502 0 0 1 0 2 Ribosome 1 0.500231643909352 0.759875893592834 0.999536712181295 hm5C_site_11033 DeepMRMD:0.759875893592834;iRNA_m5C:0.999536712181295 11034 chr9 139887833 139887833 1 + C T rs566004185 139887814 + 139887794 139887834 41 GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCCG GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCTG < 41bp 1 0.529477886614955 1 0.769457876682281 experiment 0.94104422677009 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887814 chr9:139887833 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_8503 0 0 1 0 2 Ribosome 1 0.500231643921179 0.461084246635438 0.999536712157642 hm5C_site_11034 DeepMRMD:0.461084246635438;iRNA_m5C:0.999536712157642 11035 chr9 139975195 139975195 1 + C T rs41302685 139975202 + 139975182 139975222 41 CCCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCC CCCCACTGAAGAATGCAGAGCCAGCCGACAGGGACAGTCCC < 41bp 1 0.0774450287308058 1 0.580168187618256 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975202 chr9:139975195 synonymous SNV . 0 14 hm5C_associated_SNPs_8504 0 0 1 0 1 Ribosome 1 0.5002316439952 0.839663624763488 0.999536712009599 hm5C_site_11035 DeepMRMD:0.839663624763488;iRNA_m5C:0.999536712009599 11036 chr9 139975195 139975195 1 + C T rs41302685 139975203 + 139975183 139975223 41 CCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCCC CCCACTGAAGAATGCAGAGCCAGCCGACAGGGACAGTCCCC < 41bp 1 0.368554187185637 1 0.445291966199875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975203 chr9:139975195 synonymous SNV . 0 13 hm5C_associated_SNPs_8505 0 0 1 0 1 Ribosome 1 0.500231643921036 1 0.999536712157927 hm5C_site_11036 DeepMRMD:1;iRNA_m5C:0.999536712157927 11037 chr9 140002989 140002989 1 + T C rs4880091 140002991 + 140002971 140003011 41 AAACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAG AAACCTGCTCAGCCTGGACGCCTACGTGTTCAACACCGAAG < 41bp 1 0.0518480956025521 1 0.165575623512268 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002991 chr9:140002989 synonymous SNV . 0 19 hm5C_associated_SNPs_8506 2 0 1 1 0 Ribosome 1 0.500231685547408 1 0.999536628905183 hm5C_site_11037 DeepMRMD:1;iRNA_m5C:0.999536628905183 not specified not specified 11038 chr9 140002989 140002989 1 + T C rs4880091 140002992 + 140002972 140003012 41 AACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAGC AACCTGCTCAGCCTGGACGCCTACGTGTTCAACACCGAAGC < 41bp 1 0.416691878202031 1 0.113255232572556 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002992 chr9:140002989 synonymous SNV . 0 18 hm5C_associated_SNPs_8507 2 0 1 1 0 Ribosome 1 0.50023164392109 1 0.999536712157819 hm5C_site_11038 DeepMRMD:1;iRNA_m5C:0.999536712157819 not specified not specified 11039 chr9 140002995 140002995 1 + C T rs118117962 140002991 + 140002971 140003011 41 AAACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAG AAACCTGCTCAGCCTGGATGCCTATGTGTTCAACACCGAAG < 41bp 1 0.0712661994419199 1 0.168125480413437 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002991 chr9:140002995 synonymous SNV . 0 25 hm5C_associated_SNPs_8508 2 0 1 1 0 Ribosome 1 0.500231325675563 1 0.999537348648874 hm5C_site_11039 DeepMRMD:1;iRNA_m5C:0.999537348648874 not specified not specified 11040 chr9 140002995 140002995 1 + C T rs118117962 140002992 + 140002972 140003012 41 AACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAGC AACCTGCTCAGCCTGGATGCCTATGTGTTCAACACCGAAGC < 41bp 1 0.293097047430016 1 0.101776599884033 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002992 chr9:140002995 synonymous SNV . 0 24 hm5C_associated_SNPs_8509 2 0 1 1 0 Ribosome 1 0.500231644294701 1 0.999536711410598 hm5C_site_11040 DeepMRMD:1;iRNA_m5C:0.999536711410598 not specified not specified 11041 chr9 140100302 140100302 1 + G A rs367940263 140100319 + 140100299 140100339 41 CTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT CTGAGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT < 41bp 1 0.376161847496563 1 0.550494015216827 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100319 chr9:140100302 nonsynonymous SNV 0.997 1 4 hm5C_associated_SNPs_8510 0 0 1 0 1 chromatin 1 0.500231643921099 0.899011969566346 0.999536712157803 hm5C_site_11041 DeepMRMD:0.899011969566346;iRNA_m5C:0.999536712157803 11042 chr9 140100317 140100317 1 + C G rs113809617 140100319 + 140100299 140100339 41 CTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT CTGGGTCGCGAGGCCCGGGGCCGGCGGCTTGGCTGCCGGGT < 41bp 1 0.34213196453748 1 0.569193601608276 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100319 chr9:140100317 nonsynonymous SNV 0.977 1 19 hm5C_associated_SNPs_8512 0 1 0 0 1 chromatin 1 0.500231643921093 0.861612796783448 0.999536712157813 hm5C_site_11042 DeepMRMD:0.861612796783448;iRNA_m5C:0.999536712157813 11043 chr9 140100317 140100317 1 + C G rs113809617 140100331 + 140100311 140100351 41 GCCCGGCGCCGGCGGCTTGGCTGCCGGGTGCAGGCCCTGGA GCCCGGGGCCGGCGGCTTGGCTGCCGGGTGCAGGCCCTGGA < 41bp 1 0.662352781336888 1 0.532456636428833 experiment 0.675294437326225 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100331 chr9:140100317 nonsynonymous SNV 0.977 1 7 hm5C_associated_SNPs_8514 0 1 0 0 1 chromatin 1 0.500231643921092 0.935086727142334 0.999536712157815 hm5C_site_11043 DeepMRMD:0.935086727142334;iRNA_m5C:0.999536712157815 11044 chr9 140110238 140110238 1 + T C rs76182525 140110226 + 140110206 140110246 41 GTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA GTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGCGTGGCCCA < 41bp 1 0.135177008020036 1 0.0520917475223541 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110226 chr9:140110238 synonymous SNV . 0 33 hm5C_associated_SNPs_8515 0 0 1 0 1 chromatin 1 0.500231643920743 1 0.999536712158513 hm5C_site_11044 DeepMRMD:1;iRNA_m5C:0.999536712158513 11045 chr9 140110238 140110238 1 + T C rs76182525 140110236 + 140110216 140110256 41 TCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAGACT TCCGAGCAGCCATCCAGGAGCGCGTGGCCCAGGGCCAGACT < 41bp 1 0.525545778984104 1 0.312163114547729 experiment 0.948908442031793 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110236 chr9:140110238 synonymous SNV . 0 23 hm5C_associated_SNPs_8516 0 0 1 0 1 chromatin 1 0.50023164392124 1 0.999536712157519 hm5C_site_11045 DeepMRMD:1;iRNA_m5C:0.999536712157519 11046 chr9 140135784 140135784 1 + C A rs11545612 140135802 + 140135782 140135822 41 CTCCTGCTTCCCCGCCGCCGCCGCCGCCATCATGAGGGAAA CTACTGCTTCCCCGCCGCCGCCGCCGCCATCATGAGGGAAA < 41bp 1 0.128223957270403 1 0.0838532149791718 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TUBB4B ENSG00000188229 UTR5 Human protein_coding chr9:140135802 chr9:140135784 . . 0 3 hm5C_associated_SNPs_8517 0 0 1 0 1 Cytosol 1 0.500231643953722 1 0.999536712092556 hm5C_site_11046 DeepMRMD:1;iRNA_m5C:0.999536712092556 11047 chr9 140135797 140135797 1 + C A rs556036177 140135802 + 140135782 140135822 41 CTCCTGCTTCCCCGCCGCCGCCGCCGCCATCATGAGGGAAA CTCCTGCTTCCCCGCAGCCGCCGCCGCCATCATGAGGGAAA < 41bp 1 0.131517780090294 1 0.0719948709011078 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TUBB4B ENSG00000188229 UTR5 Human protein_coding chr9:140135802 chr9:140135797 . . 0 16 hm5C_associated_SNPs_8518 0 0 1 0 1 Cytosol 1 0.500231659564074 1 0.999536680871852 hm5C_site_11047 DeepMRMD:1;iRNA_m5C:0.999536680871852 11048 chr9 140167022 140167022 1 + G A rs3204123 140167018 + 140166998 140167038 41 TCACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGT TCACCTGCACCCCAGGGTGGCCCCATCTAAGCTGGAGGCGT < 41bp 1 0.432324088142509 1 0.126608431339264 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167018 chr9:140167022 synonymous SNV . 0 25 hm5C_associated_SNPs_8519 0 0 1 0 2 Ribosome 1 0.500231643888628 1 0.999536712222744 hm5C_site_11048 DeepMRMD:1;iRNA_m5C:0.999536712222744 11049 chr9 140167022 140167022 1 + G A rs3204123 140167019 + 140166999 140167039 41 CACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTT CACCTGCACCCCAGGGTGGCCCCATCTAAGCTGGAGGCGTT < 41bp 1 0.147947100820191 1 0.214255839586258 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167019 chr9:140167022 synonymous SNV . 0 24 hm5C_associated_SNPs_8520 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11049 DeepMRMD:1;iRNA_m5C:0.999536712157815 11050 chr9 140167022 140167022 1 + G A rs3204123 140167020 + 140167000 140167040 41 ACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTTG ACCTGCACCCCAGGGTGGCCCCATCTAAGCTGGAGGCGTTG < 41bp 1 0.0729847723441524 1 0.249065071344376 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167020 chr9:140167022 synonymous SNV . 0 23 hm5C_associated_SNPs_8521 0 0 1 0 2 Ribosome 1 0.500231643921016 1 0.999536712157968 hm5C_site_11050 DeepMRMD:1;iRNA_m5C:0.999536712157968 11051 chr9 140167022 140167022 1 + G A rs3204123 140167021 + 140167001 140167041 41 CCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTTGC CCTGCACCCCAGGGTGGCCCCATCTAAGCTGGAGGCGTTGC < 41bp 1 0.289842984533631 1 0.238022446632385 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167021 chr9:140167022 synonymous SNV . 0 22 hm5C_associated_SNPs_8522 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11051 DeepMRMD:1;iRNA_m5C:0.999536712157815 11052 chr9 140167349 140167349 1 + T C rs538244324 140167348 + 140167328 140167368 41 CGCCGGCCCTGGAGCTGCCCCTCCCCAGCGTGCCCGCCCCT CGCCGGCCCTGGAGCTGCCCCCCCCCAGCGTGCCCGCCCCT < 41bp 1 0.266743553117276 1 0.13205748796463 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167348 chr9:140167349 nonsynonymous SNV 0.952 4 22 hm5C_associated_SNPs_8523 0 0 1 0 0 Ribosome 1 0.50023164372457 1 0.999536712550859 hm5C_site_11052 DeepMRMD:1;iRNA_m5C:0.999536712550859 11053 chr9 140175563 140175563 1 + T G rs182719883 140175579 + 140175559 140175599 41 CCGATCCTCTGTCCCCGCCGCCGGCCCCGCTGCAGTCCCAA CCGAGCCTCTGTCCCCGCCGCCGGCCCCGCTGCAGTCCCAA < 41bp 1 0.33555880433003 1 0.733950793743134 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOR4A ENSG00000198113 UTR3 Human protein_coding chr9:140175579 chr9:140175563 . . 0 5 hm5C_associated_SNPs_8524 0 0 1 0 0 Ribosome 1 0.500231643921093 0.532098412513732 0.999536712157815 hm5C_site_11053 DeepMRMD:0.532098412513732;iRNA_m5C:0.999536712157815 11054 chr9 140175563 140175563 1 + T G rs182719883 140175580 + 140175560 140175600 41 CGATCCTCTGTCCCCGCCGCCGGCCCCGCTGCAGTCCCAAC CGAGCCTCTGTCCCCGCCGCCGGCCCCGCTGCAGTCCCAAC < 41bp 1 0.331091399238338 1 0.682592689990997 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOR4A ENSG00000198113 UTR3 Human protein_coding chr9:140175580 chr9:140175563 . . 0 4 hm5C_associated_SNPs_8525 0 0 1 0 0 Ribosome 1 0.50023158768119 0.634814620018006 0.99953682463762 hm5C_site_11054 DeepMRMD:0.634814620018006;iRNA_m5C:0.99953682463762 11055 chr9 140175563 140175563 1 + T G rs182719883 140175583 + 140175563 140175603 41 TCCTCTGTCCCCGCCGCCGGCCCCGCTGCAGTCCCAACCCG GCCTCTGTCCCCGCCGCCGGCCCCGCTGCAGTCCCAACCCG < 41bp 1 0.544488022860764 1 0.177040129899979 experiment 0.911023954278472 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOR4A ENSG00000198113 UTR3 Human protein_coding chr9:140175583 chr9:140175563 . . 0 1 hm5C_associated_SNPs_8526 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_11055 DeepMRMD:1;iRNA_m5C:0.999536712157815 11056 chr9 140175614 140175614 1 + G A rs569842647 140175632 + 140175612 140175652 41 CGGGAGGAGCGCAGGGGCGGCGATGACCAGTCCCGAAAGGG CGAGAGGAGCGCAGGGGCGGCGATGACCAGTCCCGAAAGGG < 41bp 1 0.318942775610978 1 0.325497061014175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOR4A ENSG00000198113 UTR3 Human protein_coding chr9:140175632 chr9:140175614 . . 0 3 hm5C_associated_SNPs_8527 0 0 0 0 0 Ribosome 1 0.500234082375698 1 0.999531835248603 hm5C_site_11056 DeepMRMD:1;iRNA_m5C:0.999531835248603 11057 chr10 1054898 1054898 1 + G A rs149656462 1054906 + 1054886 1054926 41 GGATCTTCTCAGGAGAGGCCCCCTTTCATCCCTGAAGGAGT GGATCTTCTCAGAAGAGGCCCCCTTTCATCCCTGAAGGAGT < 41bp 1 0.0300085682599896 1 0.036618709564209 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1054906 chr10:1054898 nonsynonymous SNV 0.695 1 13 hm5C_associated_SNPs_8528 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_11057 DeepMRMD:1;iRNA_m5C:0.999536712157817 11058 chr10 1054898 1054898 1 + G A rs149656462 1054907 + 1054887 1054927 41 GATCTTCTCAGGAGAGGCCCCCTTTCATCCCTGAAGGAGTG GATCTTCTCAGAAGAGGCCCCCTTTCATCCCTGAAGGAGTG < 41bp 1 0.0159718803205385 1 0.10677033662796 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1054907 chr10:1054898 nonsynonymous SNV 0.695 1 12 hm5C_associated_SNPs_8529 0 0 1 0 1 Cytosol 1 0.500231643947291 1 0.999536712105418 hm5C_site_11058 DeepMRMD:1;iRNA_m5C:0.999536712105418 11059 chr10 3159047 3159047 1 + C T rs191057630 3159066 + 3159046 3159086 41 CCAAATCTCAACTCTATGACCTGCTTTTAAGGAAGAAGGAA CTAAATCTCAACTCTATGACCTGCTTTTAAGGAAGAAGGAA < 41bp 1 0.154430251207337 1 0.105188250541687 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFKP ENSG00000067057 intronic Human protein_coding chr10:3159066 chr10:3159047 . . 0 2 hm5C_associated_SNPs_8531 0 0 1 0 1 Nucleus 1 0.500232466439803 1 0.999535067120394 hm5C_site_11059 DeepMRMD:1;iRNA_m5C:0.999535067120394 11060 chr10 3159062 3159062 1 + T A rs149727814 3159066 + 3159046 3159086 41 CCAAATCTCAACTCTATGACCTGCTTTTAAGGAAGAAGGAA CCAAATCTCAACTCTAAGACCTGCTTTTAAGGAAGAAGGAA < 41bp 1 0.158785365854388 1 0.120429545640945 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFKP ENSG00000067057 intronic Human protein_coding chr10:3159066 chr10:3159062 . . 0 17 hm5C_associated_SNPs_8532 0 0 1 0 1 Nucleus 1 0.500231641523332 1 0.999536716953337 hm5C_site_11060 DeepMRMD:1;iRNA_m5C:0.999536716953337 11061 chr10 3159081 3159081 1 + A T rs76818338 3159066 + 3159046 3159086 41 CCAAATCTCAACTCTATGACCTGCTTTTAAGGAAGAAGGAA CCAAATCTCAACTCTATGACCTGCTTTTAAGGAAGTAGGAA < 41bp 1 0.159011593168535 1 0.0665039718151093 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFKP ENSG00000067057 intronic Human protein_coding chr10:3159066 chr10:3159081 . . 0 36 hm5C_associated_SNPs_8533 0 0 0 0 0 Nucleus 1 0.500231639542738 1 0.999536720914525 hm5C_site_11061 DeepMRMD:1;iRNA_m5C:0.999536720914525 11062 chr10 4950600 4950600 1 + A T rs529748637 4950605 + 4950585 4950625 41 AGGCTGTGTTAAGTGATTCTCTGACAAGGTAAGATCTAATG AGGCTGTGTTAAGTGTTTCTCTGACAAGGTAAGATCTAATG < 41bp 1 0.267753839245418 1 0.332634776830673 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C6P ENSG00000187134 UTR5 Human protein_coding chr10:4950605 chr10:4950600 . . 0 16 hm5C_associated_SNPs_8534 0 0 0 0 2 unknown 1 0.500231643928585 1 0.999536712142829 hm5C_site_11062 DeepMRMD:1;iRNA_m5C:0.999536712142829 11063 chr10 5790729 5790729 1 + C T rs11593253 5790732 + 5790712 5790752 41 TTCAGAATCCTTTGATACTTCTGTTTGTGGAATAGCCACAG TTCAGAATCCTTTGATATTTCTGTTTGTGGAATAGCCACAG < 41bp 1 0.436146230552613 1 0.122759699821472 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM208B ENSG00000108021 CDS Human protein_coding chr10:5790732 chr10:5790729 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_8535 0 0 1 0 0 Nucleus 1 0.500231643980435 1 0.999536712039129 hm5C_site_11063 DeepMRMD:1;iRNA_m5C:0.999536712039129 11064 chr10 5790738 5790738 1 + G A rs183849963 5790732 + 5790712 5790752 41 TTCAGAATCCTTTGATACTTCTGTTTGTGGAATAGCCACAG TTCAGAATCCTTTGATACTTCTGTTTATGGAATAGCCACAG < 41bp 1 0.345036634842071 1 0.125387072563171 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM208B ENSG00000108021 CDS Human protein_coding chr10:5790732 chr10:5790738 nonsynonymous SNV 0.004 0 27 hm5C_associated_SNPs_8536 0 0 1 0 0 Nucleus 1 0.500231644878367 1 0.999536710243266 hm5C_site_11064 DeepMRMD:1;iRNA_m5C:0.999536710243266 11065 chr10 6245174 6245174 1 + G A rs202167699 6245160 + 6245140 6245180 41 TTTGTTCCGGGGGTCGGCGGCCGCTCTCCTGCCAGCGTCGG TTTGTTCCGGGGGTCGGCGGCCGCTCTCCTGCCAACGTCGG < 41bp 1 0.495968231789231 1 0.25057515501976 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PFKFB3 ENSG00000170525 UTR5 Human protein_coding chr10:6245160 chr10:6245174 . . 0 35 hm5C_associated_SNPs_8538 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11065 DeepMRMD:1;iRNA_m5C:0.999536712157815 11066 chr10 6245178 6245178 1 + C T rs558760497 6245160 + 6245140 6245180 41 TTTGTTCCGGGGGTCGGCGGCCGCTCTCCTGCCAGCGTCGG TTTGTTCCGGGGGTCGGCGGCCGCTCTCCTGCCAGCGTTGG < 41bp 1 0.480114289180398 1 0.301882266998291 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PFKFB3 ENSG00000170525 UTR5 Human protein_coding chr10:6245160 chr10:6245178 . . 0 39 hm5C_associated_SNPs_8539 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11066 DeepMRMD:1;iRNA_m5C:0.999536712157815 11067 chr10 11784400 11784400 1 + G T rs534715744 11784413 + 11784393 11784433 41 GGGCCTGGCCTGGGGCGTCCCCGCGAAGCCTGGGCCTGTCA GGGCCTGTCCTGGGGCGTCCCCGCGAAGCCTGGGCCTGTCA < 41bp 1 0.616996168304642 1 0.33891487121582 experiment 0.766007663390716 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ECHDC3 ENSG00000134463 UTR5 Human protein_coding chr10:11784413 chr10:11784400 . . 0 8 hm5C_associated_SNPs_8540 0 0 0 0 0 Cytosol 1 0.500231643614715 1 0.999536712770569 hm5C_site_11067 DeepMRMD:1;iRNA_m5C:0.999536712770569 11068 chr10 11784416 11784416 1 + C T rs554911891 11784413 + 11784393 11784433 41 GGGCCTGGCCTGGGGCGTCCCCGCGAAGCCTGGGCCTGTCA GGGCCTGGCCTGGGGCGTCCCCGTGAAGCCTGGGCCTGTCA < 41bp 1 0.458114818378231 1 0.101732790470123 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ECHDC3 ENSG00000134463 UTR5 Human protein_coding chr10:11784413 chr10:11784416 . . 0 24 hm5C_associated_SNPs_8541 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11068 DeepMRMD:1;iRNA_m5C:0.999536712157815 11069 chr10 11912065 11912065 1 + C G rs17857360 11912069 + 11912049 11912089 41 CGTGGCCGGGGCCTGCCGGGCCCCGCTGAGAGTCTCCGGGC CGTGGCCGGGGCCTGCGGGGCCCCGCTGAGAGTCTCCGGGC < 41bp 1 0.627326353534062 1 0.311122715473175 experiment 0.745347292931877 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11912069 chr10:11912065 nonsynonymous SNV 0.000 1 17 hm5C_associated_SNPs_8542 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_11069 DeepMRMD:1;iRNA_m5C:0.999536712157815 11070 chr10 11912065 11912065 1 + C G rs17857360 11912070 + 11912050 11912090 41 GTGGCCGGGGCCTGCCGGGCCCCGCTGAGAGTCTCCGGGCA GTGGCCGGGGCCTGCGGGGCCCCGCTGAGAGTCTCCGGGCA < 41bp 1 0.568197987279594 1 0.468301355838776 experiment 0.863604025440812 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11912070 chr10:11912065 nonsynonymous SNV 0.000 1 16 hm5C_associated_SNPs_8543 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_11070 DeepMRMD:1;iRNA_m5C:0.999536712157815 11071 chr10 11912065 11912065 1 + C G rs17857360 11912071 + 11912051 11912091 41 TGGCCGGGGCCTGCCGGGCCCCGCTGAGAGTCTCCGGGCAG TGGCCGGGGCCTGCGGGGCCCCGCTGAGAGTCTCCGGGCAG < 41bp 1 0.592428817818995 1 0.305582821369171 experiment 0.81514236436201 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11912071 chr10:11912065 nonsynonymous SNV 0.000 1 15 hm5C_associated_SNPs_8544 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_11071 DeepMRMD:1;iRNA_m5C:0.999536712157815 11072 chr10 11912114 11912114 1 + G A rs375509412 11912111 + 11912091 11912131 41 GGGGGTCAGGCTCCGCGGGGCCCGGCGCTGGCCAACGGCTT GGGGGTCAGGCTCCGCGGGGCCCAGCGCTGGCCAACGGCTT < 41bp 1 0.243042626250821 1 0.0783896744251251 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11912111 chr10:11912114 synonymous SNV 0.013 0 24 hm5C_associated_SNPs_8546 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_11072 DeepMRMD:1;iRNA_m5C:0.999536712157815 11073 chr10 11912114 11912114 1 + G A rs375509412 11912112 + 11912092 11912132 41 GGGGTCAGGCTCCGCGGGGCCCGGCGCTGGCCAACGGCTTC GGGGTCAGGCTCCGCGGGGCCCAGCGCTGGCCAACGGCTTC < 41bp 1 0.405750526473388 1 0.169326394796371 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11912112 chr10:11912114 synonymous SNV 0.013 0 23 hm5C_associated_SNPs_8547 0 0 0 0 0 chromatin 1 0.500227104456606 1 0.999545791086788 hm5C_site_11073 DeepMRMD:1;iRNA_m5C:0.999545791086788 11074 chr10 12111090 12111090 1 + T A rs1279138 12111105 + 12111085 12111125 41 CTCTCTTCTGGCGTGGCTACCAGACCGAGCGGGGCGTTTAC CTCTCATCTGGCGTGGCTACCAGACCGAGCGGGGCGTTTAC < 41bp 1 0.535938141216282 1 0.444387406110764 experiment 0.928123717567435 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12111105 chr10:12111090 nonsynonymous SNV 0.223 0 6 hm5C_associated_SNPs_8548 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644102684 1 0.999536711794633 hm5C_site_11074 DeepMRMD:1;iRNA_m5C:0.999536711794633 11075 chr10 12148361 12148361 1 + T C rs561946429 12148373 + 12148353 12148393 41 TTCAATGGTGCCCAGATCATCTTTGACACATTCATCTCTGG TTCAATGGCGCCCAGATCATCTTTGACACATTCATCTCTGG < 41bp 1 0.149708246250613 1 0.192356288433075 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148373 chr10:12148361 synonymous SNV . 0 9 hm5C_associated_SNPs_8549 0 0 1 0 1 Endoplasmic reticulum 1 0.5002316439182 1 0.9995367121636 hm5C_site_11075 DeepMRMD:1;iRNA_m5C:0.9995367121636 11076 chr10 12162789 12162789 1 + C A rs143212640 12162801 + 12162781 12162821 41 TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC TATAGCTCAGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC < 41bp 1 0.152925939480861 1 0.67154186964035 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12162801 chr10:12162789 nonsynonymous SNV 0.695 1 9 hm5C_associated_SNPs_8550 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.6569162607193 0.999536712157815 hm5C_site_11076 DeepMRMD:0.6569162607193;iRNA_m5C:0.999536712157815 11077 chr10 12191697 12191697 1 + T C rs141011007 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACCGAAAGACAGAGCTTTAT < 41bp 1 0.593816970381208 1 0.0587634444236755 experiment 0.812366059237584 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191697 synonymous SNV . 0 31 hm5C_associated_SNPs_8551 0 0 1 5 1 Ribosome 1 0.50022772166522 1 0.999544556669559 hm5C_site_11077 DeepMRMD:1;iRNA_m5C:0.999544556669559 11078 chr10 12871588 12871588 1 + C T rs189318034 12871600 + 12871580 12871620 41 AAATTAGCCGGGCGTGGTGGCACACACCTGTAGTCCCGGCT AAATTAGCTGGGCGTGGTGGCACACACCTGTAGTCCCGGCT < 41bp 1 0.328082775675888 1 0.412750363349915 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAMK1D ENSG00000183049 UTR3 Human protein_coding chr10:12871600 chr10:12871588 . . 0 9 hm5C_associated_SNPs_8552 0 0 0 0 0 Ribosome 1 0.500231644458132 1 0.999536711083736 hm5C_site_11078 DeepMRMD:1;iRNA_m5C:0.999536711083736 11079 chr10 12871588 12871588 1 + C T rs189318034 12871602 + 12871582 12871622 41 ATTAGCCGGGCGTGGTGGCACACACCTGTAGTCCCGGCTAC ATTAGCTGGGCGTGGTGGCACACACCTGTAGTCCCGGCTAC < 41bp 1 0.541846156343194 1 0.108658939599991 experiment 0.916307687313613 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAMK1D ENSG00000183049 UTR3 Human protein_coding chr10:12871602 chr10:12871588 . . 0 7 hm5C_associated_SNPs_8553 0 0 0 0 0 Ribosome 1 0.500231659377398 1 0.999536681245205 hm5C_site_11079 DeepMRMD:1;iRNA_m5C:0.999536681245205 11080 chr10 12871588 12871588 1 + C T rs189318034 12871604 + 12871584 12871624 41 TAGCCGGGCGTGGTGGCACACACCTGTAGTCCCGGCTACTC TAGCTGGGCGTGGTGGCACACACCTGTAGTCCCGGCTACTC < 41bp 1 0.630383577332611 1 0.0404143333435059 experiment 0.739232845334779 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAMK1D ENSG00000183049 UTR3 Human protein_coding chr10:12871604 chr10:12871588 . . 0 5 hm5C_associated_SNPs_8554 0 0 0 0 0 Ribosome 1 0.500231645669412 1 0.999536708661176 hm5C_site_11080 DeepMRMD:1;iRNA_m5C:0.999536708661176 11081 chr10 12871588 12871588 1 + C T rs189318034 12871606 + 12871586 12871626 41 GCCGGGCGTGGTGGCACACACCTGTAGTCCCGGCTACTCGG GCTGGGCGTGGTGGCACACACCTGTAGTCCCGGCTACTCGG < 41bp 1 0.417971066114229 1 0.179036051034927 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAMK1D ENSG00000183049 UTR3 Human protein_coding chr10:12871606 chr10:12871588 . . 0 3 hm5C_associated_SNPs_8555 0 0 0 0 0 Ribosome 1 0.500231660926649 1 0.999536678146703 hm5C_site_11081 DeepMRMD:1;iRNA_m5C:0.999536678146703 11082 chr10 13655857 13655857 1 + A G rs142096835 13655839 + 13655819 13655859 41 AGTGCGACCCAGAAACAGACCGAGTCCTACCTAAGACCACT AGTGCGACCCAGAAACAGACCGAGTCCTACCTAAGACCGCT < 41bp 1 0.502389359674458 1 0.599799931049347 experiment 0.995221280651084 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRPF18 ENSG00000165630;ENSG00000239665 CDS Human other chr10:13655839 chr10:13655857 synonymous SNV . 0 39 hm5C_associated_SNPs_8557 0 0 0 0 0 Cytosol 1 0.500231643920617 0.800400137901306 0.999536712158765 hm5C_site_11082 DeepMRMD:0.800400137901306;iRNA_m5C:0.999536712158765 11083 chr10 14885598 14885598 1 + C T rs41284449 14885600 + 14885580 14885620 41 GGCCCTTGACCAGTGAGCCCCCTCCAAGGTGGGCAAGGCGA GGCCCTTGACCAGTGAGCTCCCTCCAAGGTGGGCAAGGCGA < 41bp 1 0.0618291073719251 1 0.386961966753006 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HSPA14 ENSG00000187522 UTR3 Human protein_coding chr10:14885600 chr10:14885598 . . 0 19 hm5C_associated_SNPs_8558 0 0 1 0 0 Cytosol 1 0.500231580703629 1 0.999536838592741 hm5C_site_11083 DeepMRMD:1;iRNA_m5C:0.999536838592741 11084 chr10 15115527 15115527 1 + T C rs557980742 15115542 + 15115522 15115562 41 GGTGGTGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAG GGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAG < 41bp 1 0.62982558073602 1 0.385202378034592 experiment 0.740348838527959 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACBD7-DCLRE1CP1 ENSG00000237470 ncRNA_intronic Human unprocessed_pseudogene chr10:15115542 chr10:15115527 . . 0 6 hm5C_associated_SNPs_8560 0 0 0 0 0 unknown 1 0.500231652794126 1 0.999536694411748 hm5C_site_11084 DeepMRMD:1;iRNA_m5C:0.999536694411748 11085 chr10 15115552 15115552 1 + G A rs190938250 15115542 + 15115522 15115562 41 GGTGGTGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAG GGTGGTGGGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAG < 41bp 1 0.669150395086436 1 0.34101277589798 experiment 0.661699209827128 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACBD7-DCLRE1CP1 ENSG00000237470 ncRNA_intronic Human unprocessed_pseudogene chr10:15115542 chr10:15115552 . . 0 31 hm5C_associated_SNPs_8562 0 0 0 0 0 unknown 1 0.500231826493736 1 0.999536347012527 hm5C_site_11085 DeepMRMD:1;iRNA_m5C:0.999536347012527 11086 chr10 15115562 15115562 1 + G T rs183131004 15115542 + 15115522 15115562 41 GGTGGTGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAG GGTGGTGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAT < 41bp 1 0.589732286822679 1 0.42851784825325 experiment 0.820535426354641 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACBD7-DCLRE1CP1 ENSG00000237470 ncRNA_intronic Human unprocessed_pseudogene chr10:15115542 chr10:15115562 . . 0 41 hm5C_associated_SNPs_8564 0 0 0 0 0 unknown 1 0.50023164392649 1 0.999536712147019 hm5C_site_11086 DeepMRMD:1;iRNA_m5C:0.999536712147019 11087 chr10 15139554 15139554 1 + C T rs536293708 15139571 + 15139551 15139591 41 CGCCGCCCTCCCGGTTGGGCCGCCCAGTCCCGGGCCGGGCG CGCTGCCCTCCCGGTTGGGCCGCCCAGTCCCGGGCCGGGCG < 41bp 1 0.487892590140433 1 0.568672597408295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPP38 ENSG00000152464 UTR5 Human protein_coding chr10:15139571 chr10:15139554 . . 0 4 hm5C_associated_SNPs_8566 0 0 1 0 0 exosome 1 0.500231643921093 0.86265480518341 0.999536712157815 hm5C_site_11087 DeepMRMD:0.86265480518341;iRNA_m5C:0.999536712157815 11088 chr10 17271365 17271365 1 + T C rs373139864 17271373 + 17271353 17271393 41 GTTCGCCTCTTCTCCGGGAGCCAGTCCGCGCCACCGCCGCC GTTCGCCTCTTCCCCGGGAGCCAGTCCGCGCCACCGCCGCC < 41bp 1 0.612762440560123 1 0.0966763198375702 experiment 0.774475118879754 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM-AS1 ENSG00000229124 ncRNA_exonic Human antisense chr10:17271373 chr10:17271365 . . 0 13 hm5C_associated_SNPs_8567 0 0 1 0 1 unknown 1 0.500231643913977 1 0.999536712172046 hm5C_site_11088 DeepMRMD:1;iRNA_m5C:0.999536712172046 11089 chr10 17271378 17271378 1 + C G rs559734613 17271373 + 17271353 17271393 41 GTTCGCCTCTTCTCCGGGAGCCAGTCCGCGCCACCGCCGCC GTTCGCCTCTTCTCCGGGAGCCAGTGCGCGCCACCGCCGCC < 41bp 1 0.641912738004805 1 0.299074828624725 experiment 0.716174523990391 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM-AS1 ENSG00000229124 ncRNA_exonic Human antisense chr10:17271373 chr10:17271378 . . 0 26 hm5C_associated_SNPs_8568 0 0 1 0 0 unknown 1 0.500233413811429 1 0.999533172377142 hm5C_site_11089 DeepMRMD:1;iRNA_m5C:0.999533172377142 11090 chr10 17271395 17271395 1 + C T rs200253669 17271407 + 17271387 17271427 41 CGCCGCCGCCCAGGCCATCGCCACCCTCCGCAGCCATGTCC CGCCGCCGTCCAGGCCATCGCCACCCTCCGCAGCCATGTCC < 41bp 1 0.502605168015275 1 0.0768250226974487 experiment 0.994789663969451 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VIM-AS1 ENSG00000229124 ncRNA_exonic Human antisense chr10:17271407 chr10:17271395 . . 0 9 hm5C_associated_SNPs_8569 0 0 1 0 0 unknown 1 0.500231643915207 1 0.999536712169586 hm5C_site_11090 DeepMRMD:1;iRNA_m5C:0.999536712169586 11091 chr10 17271400 17271400 1 + G A rs3758410 17271407 + 17271387 17271427 41 CGCCGCCGCCCAGGCCATCGCCACCCTCCGCAGCCATGTCC CGCCGCCGCCCAGACCATCGCCACCCTCCGCAGCCATGTCC < 41bp 1 0.46787922656657 1 0.0531424582004547 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VIM-AS1 ENSG00000229124 ncRNA_exonic Human antisense chr10:17271407 chr10:17271400 . . 0 14 hm5C_associated_SNPs_8570 0 0 1 0 0 unknown 1 0.500231643921098 1 0.999536712157803 hm5C_site_11091 DeepMRMD:1;iRNA_m5C:0.999536712157803 11092 chr10 17271410 17271410 1 + C A rs564342704 17271407 + 17271387 17271427 41 CGCCGCCGCCCAGGCCATCGCCACCCTCCGCAGCCATGTCC CGCCGCCGCCCAGGCCATCGCCAACCTCCGCAGCCATGTCC < 41bp 1 0.49794185796864 1 0.16185861825943 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VIM-AS1 ENSG00000229124 ncRNA_exonic Human antisense chr10:17271407 chr10:17271410 . . 0 24 hm5C_associated_SNPs_8571 0 0 1 0 0 unknown 1 0.500231643921062 1 0.999536712157876 hm5C_site_11092 DeepMRMD:1;iRNA_m5C:0.999536712157876 11093 chr10 17271963 17271963 1 + A C rs149942621 17271952 + 17271932 17271972 41 GTCGAGGTGGAGCGCGACAACCTGGCCGAGGACATCATGCG GTCGAGGTGGAGCGCGACAACCTGGCCGAGGCCATCATGCG < 41bp 1 0.445984984435506 1 0.341727793216705 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271952 chr10:17271963 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_8572 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11093 DeepMRMD:1;iRNA_m5C:0.999536712157815 11094 chr10 17275861 17275861 1 + C T rs4903 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACGGCTGCCCTGCGTGATGTACGTCAGCAA < 41bp 1 0.644870930969309 1 0.686524510383606 experiment 0.710258138061381 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275861 synonymous SNV . 0 29 hm5C_associated_SNPs_8573 0 0 1 1 2 Ribosome 1 0.500231647636575 0.626950979232788 0.99953670472685 hm5C_site_11094 DeepMRMD:0.626950979232788;iRNA_m5C:0.99953670472685 11095 chr10 17275861 17275861 1 + C T rs4903 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACGGCTGCCCTGCGTGATGTACGTCAGCAATAT < 41bp 1 0.490324611059656 1 0.204555660486221 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275861 synonymous SNV . 0 26 hm5C_associated_SNPs_8574 0 0 1 1 2 Ribosome 1 0.500231643920669 1 0.999536712158662 hm5C_site_11095 DeepMRMD:1;iRNA_m5C:0.999536712158662 11096 chr10 22031654 22031654 1 + C T rs538509781 22031674 + 22031654 22031694 41 CTTCTTTCAGAAAGGGGCCACTGTGGAAAGTGCTGGTGGGG TTTCTTTCAGAAAGGGGCCACTGTGGAAAGTGCTGGTGGGG < 41bp 1 0.305007951427416 1 0.503979027271271 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MLLT10 ENSG00000078403 UTR3 Human protein_coding chr10:22031674 chr10:22031654 . . 0 1 hm5C_associated_SNPs_8575 0 0 1 0 0 Ribosome 1 0.50023155411445 0.992041945457458 0.9995368917711 hm5C_site_11096 DeepMRMD:0.992041945457458;iRNA_m5C:0.9995368917711 11097 chr10 22031679 22031679 1 + G C rs117330146 22031674 + 22031654 22031694 41 CTTCTTTCAGAAAGGGGCCACTGTGGAAAGTGCTGGTGGGG CTTCTTTCAGAAAGGGGCCACTGTGCAAAGTGCTGGTGGGG < 41bp 1 0.233756281610272 1 0.466979026794434 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MLLT10 ENSG00000078403 UTR3 Human protein_coding chr10:22031674 chr10:22031679 . . 0 26 hm5C_associated_SNPs_8576 0 0 1 0 0 Ribosome 1 0.500224275919655 1 0.999551448160689 hm5C_site_11097 DeepMRMD:1;iRNA_m5C:0.999551448160689 11098 chr10 24816990 24816990 1 + G A rs145973323 24816988 + 24816968 24817008 41 CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTG CAATACCAAATCTGGAGATGCCACCAGCCACAGGCCCACTG < 41bp 1 0.0951822220753011 1 0.0749241709709167 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816988 chr10:24816990 synonymous SNV . 0 23 hm5C_associated_SNPs_8577 0 0 1 0 1 Nucleus 1 0.500231643712043 1 0.999536712575914 hm5C_site_11098 DeepMRMD:1;iRNA_m5C:0.999536712575914 11099 chr10 24816990 24816990 1 + G A rs145973323 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAAATCTGGAGATGCCACCAGCCACAGGCCCACTGCCAA < 41bp 1 0.272014994299207 1 0.809942722320557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24816990 synonymous SNV . 0 19 hm5C_associated_SNPs_8578 0 0 1 0 1 Nucleus 1 0.50023164392147 0.380114555358886 0.999536712157059 hm5C_site_11099 DeepMRMD:0.380114555358886;iRNA_m5C:0.999536712157059 11100 chr10 27469913 27469913 1 + T C rs115175971 27469905 + 27469885 27469925 41 CTGCGGTAGACTGGTGGGCACTTGGAGTTTGCTTGTTTGAA CTGCGGTAGACTGGTGGGCACTTGGAGTCTGCTTGTTTGAA < 41bp 1 0.274662654352808 1 0.175934374332428 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MASTL ENSG00000120539 CDS Human protein_coding chr10:27469905 chr10:27469913 synonymous SNV . 0 29 hm5C_associated_SNPs_8579 1 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11100 DeepMRMD:1;iRNA_m5C:0.999536712157815 Thrombocytopenia Thrombocytopenia 11101 chr10 35500774 35500774 1 + T C rs113826847 35500785 + 35500765 35500805 41 TAGTTGCTTTTGAAGGAATACAATATATAGCTGGCAAGAAT TAGTTGCTTCTGAAGGAATACAATATATAGCTGGCAAGAAT < 41bp 1 0.538162043173838 1 0.386038184165955 experiment 0.923675913652325 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CREM ENSG00000095794 UTR3 Human protein_coding chr10:35500785 chr10:35500774 . . 0 10 hm5C_associated_SNPs_8580 0 0 1 1 0 Ribosome 1 0.500231643870999 1 0.999536712258002 hm5C_site_11101 DeepMRMD:1;iRNA_m5C:0.999536712258002 11102 chr10 35858902 35858902 1 + T A rs114057156 35858916 + 35858896 35858936 41 TGAAGTTGTTGTTACAAAATCAGTCAGACTTTGTGGGCTGA TGAAGTAGTTGTTACAAAATCAGTCAGACTTTGTGGGCTGA < 41bp 1 0.28552998479045 1 0.104400604963303 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNY ENSG00000108100 UTR3 Human protein_coding chr10:35858916 chr10:35858902 . . 0 7 hm5C_associated_SNPs_8581 0 0 1 0 0 Cytosol 1 0.500232235876284 1 0.999535528247432 hm5C_site_11102 DeepMRMD:1;iRNA_m5C:0.999535528247432 11103 chr10 38409232 38409232 1 + C A rs370368478 38409244 + 38409224 38409264 41 GTGCACATCGGTAGTCCTGGCTACTAGAGAGGTTGAGGTGG GTGCACATAGGTAGTCCTGGCTACTAGAGAGGTTGAGGTGG < 41bp 1 0.43161664556301 1 0.0944057404994965 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF37A ENSG00000075407 UTR3 Human protein_coding chr10:38409244 chr10:38409232 . . 0 9 hm5C_associated_SNPs_8582 0 0 1 0 0 Cytosol 1 0.500231643966405 1 0.99953671206719 hm5C_site_11103 DeepMRMD:1;iRNA_m5C:0.99953671206719 11104 chr10 43289400 43289400 1 + A T rs149844017 43289408 + 43289388 43289428 41 CGCTGTTTTCTGATTCCAAGCCACTTGGGTCAGAGGATATA CGCTGTTTTCTGTTTCCAAGCCACTTGGGTCAGAGGATATA < 41bp 1 0.128029918694834 1 0.0914288759231567 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43289408 chr10:43289400 nonsynonymous SNV 0.789 2 13 hm5C_associated_SNPs_8583 0 0 1 0 0 chromatin 1 0.500231644084188 1 0.999536711831624 hm5C_site_11104 DeepMRMD:1;iRNA_m5C:0.999536711831624 11105 chr10 43289407 43289407 1 + G A rs7921071 43289408 + 43289388 43289428 41 CGCTGTTTTCTGATTCCAAGCCACTTGGGTCAGAGGATATA CGCTGTTTTCTGATTCCAAACCACTTGGGTCAGAGGATATA < 41bp 1 0.135450001511104 1 0.0487349629402161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43289408 chr10:43289407 synonymous SNV . 0 20 hm5C_associated_SNPs_8584 0 0 1 0 0 chromatin 1 0.50023164393379 1 0.999536712132421 hm5C_site_11105 DeepMRMD:1;iRNA_m5C:0.999536712132421 11106 chr10 43292246 43292246 1 + G A rs151134499 43292254 + 43292234 43292274 41 AGAAGGGGAAGCGGAGGAAGCTGATGAAAGCAGTGAAGAAG AGAAGGGGAAGCAGAGGAAGCTGATGAAAGCAGTGAAGAAG < 41bp 1 0.550350117169838 1 0.39582622051239 experiment 0.899299765660325 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292254 chr10:43292246 synonymous SNV . 0 13 hm5C_associated_SNPs_8586 0 0 1 0 0 chromatin 1 0.50023164411979 1 0.999536711760419 hm5C_site_11106 DeepMRMD:1;iRNA_m5C:0.999536711760419 11107 chr10 43292246 43292246 1 + G A rs151134499 43292264 + 43292244 43292284 41 GCGGAGGAAGCTGATGAAAGCAGTGAAGAAGAGGACTGCAC GCAGAGGAAGCTGATGAAAGCAGTGAAGAAGAGGACTGCAC < 41bp 1 0.612838863215811 1 0.525851786136627 experiment 0.774322273568378 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292264 chr10:43292246 synonymous SNV . 0 3 hm5C_associated_SNPs_8587 0 0 1 0 0 chromatin 1 0.500231644971556 0.948296427726746 0.999536710056887 hm5C_site_11107 DeepMRMD:0.948296427726746;iRNA_m5C:0.999536710056887 11108 chr10 43292441 43292441 1 + A G rs368223833 43292423 + 43292403 43292443 41 AAAGCAGCTCTCCCCACTTTCGATTCTGGGCATTGCACAGC AAAGCAGCTCTCCCCACTTTCGATTCTGGGCATTGCACGGC < 41bp 1 0.268609480643096 1 0.273519217967987 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292423 chr10:43292441 synonymous SNV . 0 39 hm5C_associated_SNPs_8588 0 0 1 0 0 chromatin 1 0.500231645041256 1 0.999536709917488 hm5C_site_11108 DeepMRMD:1;iRNA_m5C:0.999536709917488 11109 chr10 45489453 45489453 1 + C T rs17418904 45489437 + 45489417 45489457 41 AAAGCGATTCTTACAAGGAGCTTGCTGCAAGAAACACGGTC AAAGCGATTCTTACAAGGAGCTTGCTGCAAGAAACATGGTC < 41bp 1 0.0893552675297286 1 0.158612042665482 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 UTR3 Human protein_coding chr10:45489437 chr10:45489453 . . 0 37 hm5C_associated_SNPs_8589 0 0 0 0 0 Cytosol 1 0.500231643957609 1 0.999536712084783 hm5C_site_11109 DeepMRMD:1;iRNA_m5C:0.999536712084783 11110 chr10 51582894 51582894 1 + C T rs41306524 51582890 + 51582870 51582910 41 AGCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTA AGCTCCTTACATACCCAGCACCGATCCCCAGGACTGGCTTA < 41bp 1 0.0973813021998352 1 0.0515968799591064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582890 chr10:51582894 synonymous SNV . 0 25 hm5C_associated_SNPs_8590 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11110 DeepMRMD:1;iRNA_m5C:0.999536712157815 11111 chr10 51582894 51582894 1 + C T rs41306524 51582891 + 51582871 51582911 41 GCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTAC GCTCCTTACATACCCAGCACCGATCCCCAGGACTGGCTTAC < 41bp 1 0.0947697209872708 1 0.0642650723457336 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582891 chr10:51582894 synonymous SNV . 0 24 hm5C_associated_SNPs_8591 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11111 DeepMRMD:1;iRNA_m5C:0.999536712157815 11112 chr10 51582894 51582894 1 + C T rs41306524 51582895 + 51582875 51582915 41 CTTACATACCCAGCACCGACCCCCAGGACTGGCTTACCCAA CTTACATACCCAGCACCGATCCCCAGGACTGGCTTACCCAA < 41bp 1 0.637049388934916 1 0.261227041482925 experiment 0.725901222130168 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582895 chr10:51582894 synonymous SNV . 0 20 hm5C_associated_SNPs_8592 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11112 DeepMRMD:1;iRNA_m5C:0.999536712157815 11113 chr10 51582911 51582911 1 + C T rs113955117 51582891 + 51582871 51582911 41 GCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTAC GCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTAT < 41bp 1 0.178420038806759 1 0.0635435581207275 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582891 chr10:51582911 nonsynonymous SNV . 0 41 hm5C_associated_SNPs_8593 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11113 DeepMRMD:1;iRNA_m5C:0.999536712157815 11114 chr10 51582911 51582911 1 + C T rs113955117 51582895 + 51582875 51582915 41 CTTACATACCCAGCACCGACCCCCAGGACTGGCTTACCCAA CTTACATACCCAGCACCGACCCCCAGGACTGGCTTATCCAA < 41bp 1 0.52639819690408 1 0.377022564411163 experiment 0.947203606191841 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582895 chr10:51582911 nonsynonymous SNV . 0 37 hm5C_associated_SNPs_8594 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_11114 DeepMRMD:1;iRNA_m5C:0.999536712157815 11115 chr10 51584794 51584794 1 + A T rs113590757 51584778 + 51584758 51584798 41 AAAAGGTTGGAGATCAAGAGCTTCCTGATCAAGATGAGATG AAAAGGTTGGAGATCAAGAGCTTCCTGATCAAGATGTGATG < 41bp 1 0.0988960623991678 1 0.054223895072937 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCOA4 ENSG00000138293 CDS Human other chr10:51584778 chr10:51584794 nonsynonymous SNV . 0 37 hm5C_associated_SNPs_8595 0 0 1 0 0 Cytosol 1 0.50023164392082 1 0.999536712158359 hm5C_site_11115 DeepMRMD:1;iRNA_m5C:0.999536712158359 11116 chr10 51827969 51827969 1 + G T rs368992586 51827978 + 51827958 51827998 41 CAGAGCTGGTCGCTGGCGGCCGACGCGGGCGTGAGAGGCGG CAGAGCTGGTCTCTGGCGGCCGACGCGGGCGTGAGAGGCGG < 41bp 1 0.646361286684208 1 0.769592881202698 experiment 0.707277426631583 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51827978 chr10:51827969 synonymous SNV . 0 12 hm5C_associated_SNPs_8596 0 0 0 0 1 unknown 1 0.500231643871769 0.460814237594604 0.999536712256463 hm5C_site_11116 DeepMRMD:0.460814237594604;iRNA_m5C:0.999536712256463 11117 chr10 62554183 62554183 1 + T A rs145740622 62554163 + 62554143 62554183 41 GTTTCTTGCCATGTTGTTAACTATACAACCTGGCTAAAGAT GTTTCTTGCCATGTTGTTAACTATACAACCTGGCTAAAGAA < 41bp 1 0.333617659610525 1 0.770842969417572 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CDK1 ENSG00000170312 UTR3 Human protein_coding chr10:62554163 chr10:62554183 . . 0 41 hm5C_associated_SNPs_8597 0 0 1 1 0 Ribosome 1 0.500231643921098 0.458314061164856 0.999536712157805 hm5C_site_11117 DeepMRMD:0.458314061164856;iRNA_m5C:0.999536712157805 11118 chr10 64148315 64148315 1 + C G rs116297631 64148330 + 64148310 64148350 41 TTGTCCGTGATCTCAGCGGGCACGTGGTGAGTCACCCCGGG TTGTCGGTGATCTCAGCGGGCACGTGGTGAGTCACCCCGGG < 41bp 1 0.664217385385287 1 0.542498052120209 experiment 0.671565229229427 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF365 ENSG00000138311 CDS Human protein_coding chr10:64148330 chr10:64148315 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_8598 0 0 0 0 1 exosome 1 0.500231643869644 0.915003895759582 0.999536712260712 hm5C_site_11118 DeepMRMD:0.915003895759582;iRNA_m5C:0.999536712260712 11119 chr10 64565252 64565252 1 + C T rs540992216 64565266 + 64565246 64565286 41 CGGCCGCGGGCCTTGCCGCCCGAGCAGCAGTTCGAGCCGCC CGGCCGTGGGCCTTGCCGCCCGAGCAGCAGTTCGAGCCGCC < 41bp 1 0.684026497266338 1 0.797607064247131 experiment 0.631947005467323 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADO ENSG00000181915 CDS Human protein_coding chr10:64565266 chr10:64565252 nonsynonymous SNV 0.990 2 7 hm5C_associated_SNPs_8601 0 0 0 0 0 exosome 1 0.500231643921277 0.404785871505738 0.999536712157446 hm5C_site_11119 DeepMRMD:0.404785871505738;iRNA_m5C:0.999536712157446 11120 chr10 65382566 65382566 1 + G A rs572762920 65382580 + 65382560 65382600 41 GGGTTCGAGCGATTCTCCTGCCTCGGCCTCCCGAGTAACTG GGGTTCAAGCGATTCTCCTGCCTCGGCCTCCCGAGTAACTG < 41bp 1 0.457527595150891 1 0.0997459590435028 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control REEP3 ENSG00000165476 UTR3 Human protein_coding chr10:65382580 chr10:65382566 . . 0 7 hm5C_associated_SNPs_8603 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643435907 1 0.999536713128187 hm5C_site_11120 DeepMRMD:1;iRNA_m5C:0.999536713128187 11121 chr10 65382566 65382566 1 + G A rs572762920 65382586 + 65382566 65382606 41 GAGCGATTCTCCTGCCTCGGCCTCCCGAGTAACTGGGTCTA AAGCGATTCTCCTGCCTCGGCCTCCCGAGTAACTGGGTCTA < 41bp 1 0.17009625825399 1 0.142882168292999 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control REEP3 ENSG00000165476 UTR3 Human protein_coding chr10:65382586 chr10:65382566 . . 0 1 hm5C_associated_SNPs_8605 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11121 DeepMRMD:1;iRNA_m5C:0.999536712157815 11122 chr10 65382707 65382707 1 + C T rs141425770 65382719 + 65382699 65382739 41 TCGTGATCCGCCCGCCTCGGCCTCCCAAACTTCTGGGATTA TCGTGATCTGCCCGCCTCGGCCTCCCAAACTTCTGGGATTA < 41bp 1 0.182546241334712 1 0.129137516021729 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient REEP3 ENSG00000165476 UTR3 Human protein_coding chr10:65382719 chr10:65382707 . . 0 9 hm5C_associated_SNPs_8606 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11122 DeepMRMD:1;iRNA_m5C:0.999536712157815 11123 chr10 65382707 65382707 1 + C T rs141425770 65382720 + 65382700 65382740 41 CGTGATCCGCCCGCCTCGGCCTCCCAAACTTCTGGGATTAC CGTGATCTGCCCGCCTCGGCCTCCCAAACTTCTGGGATTAC < 41bp 1 0.550584481100991 1 0.0726729333400726 experiment 0.898831037798018 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient REEP3 ENSG00000165476 UTR3 Human protein_coding chr10:65382720 chr10:65382707 . . 0 8 hm5C_associated_SNPs_8607 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_11123 DeepMRMD:1;iRNA_m5C:0.999536712157815 11124 chr10 65382707 65382707 1 + C T rs141425770 65382722 + 65382702 65382742 41 TGATCCGCCCGCCTCGGCCTCCCAAACTTCTGGGATTACAG TGATCTGCCCGCCTCGGCCTCCCAAACTTCTGGGATTACAG < 41bp 1 0.529559903933953 1 0.135903060436249 experiment 0.940880192132094 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient REEP3 ENSG00000165476 UTR3 Human protein_coding chr10:65382722 chr10:65382707 . . 0 6 hm5C_associated_SNPs_8608 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643956686 1 0.999536712086628 hm5C_site_11124 DeepMRMD:1;iRNA_m5C:0.999536712086628 11125 chr10 65382707 65382707 1 + C T rs141425770 65382723 + 65382703 65382743 41 GATCCGCCCGCCTCGGCCTCCCAAACTTCTGGGATTACAGG GATCTGCCCGCCTCGGCCTCCCAAACTTCTGGGATTACAGG < 41bp 1 0.48294706907113 1 0.444523096084595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient REEP3 ENSG00000165476 UTR3 Human protein_coding chr10:65382723 chr10:65382707 . . 0 5 hm5C_associated_SNPs_8609 0 0 0 0 0 Endoplasmic reticulum 1 0.500231628406475 1 0.999536743187049 hm5C_site_11125 DeepMRMD:1;iRNA_m5C:0.999536743187049 11126 chr10 65382707 65382707 1 + C T rs141425770 65382724 + 65382704 65382744 41 ATCCGCCCGCCTCGGCCTCCCAAACTTCTGGGATTACAGGC ATCTGCCCGCCTCGGCCTCCCAAACTTCTGGGATTACAGGC < 41bp 1 0.532222809234084 1 0.374981462955475 experiment 0.935554381531831 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient REEP3 ENSG00000165476 UTR3 Human protein_coding chr10:65382724 chr10:65382707 . . 0 4 hm5C_associated_SNPs_8610 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644047912 1 0.999536711904177 hm5C_site_11126 DeepMRMD:1;iRNA_m5C:0.999536711904177 11127 chr10 65382718 65382718 1 + G A rs1255454 65382719 + 65382699 65382739 41 TCGTGATCCGCCCGCCTCGGCCTCCCAAACTTCTGGGATTA TCGTGATCCGCCCGCCTCGACCTCCCAAACTTCTGGGATTA < 41bp 1 0.185810367736326 1 0.120431542396545 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient REEP3 ENSG00000165476 UTR3 Human protein_coding chr10:65382719 chr10:65382718 . . 0 20 hm5C_associated_SNPs_8611 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643871012 1 0.999536712257976 hm5C_site_11127 DeepMRMD:1;iRNA_m5C:0.999536712257976 11128 chr10 65382718 65382718 1 + G A rs1255454 65382720 + 65382700 65382740 41 CGTGATCCGCCCGCCTCGGCCTCCCAAACTTCTGGGATTAC CGTGATCCGCCCGCCTCGACCTCCCAAACTTCTGGGATTAC < 41bp 1 0.578848292605696 1 0.138075828552246 experiment 0.842303414788607 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient REEP3 ENSG00000165476 UTR3 Human protein_coding chr10:65382720 chr10:65382718 . . 0 19 hm5C_associated_SNPs_8612 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921985 1 0.999536712156031 hm5C_site_11128 DeepMRMD:1;iRNA_m5C:0.999536712156031 11129 chr10 65382718 65382718 1 + G A rs1255454 65382722 + 65382702 65382742 41 TGATCCGCCCGCCTCGGCCTCCCAAACTTCTGGGATTACAG TGATCCGCCCGCCTCGACCTCCCAAACTTCTGGGATTACAG < 41bp 1 0.57600996071864 1 0.322222769260406 experiment 0.847980078562721 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient REEP3 ENSG00000165476 UTR3 Human protein_coding chr10:65382722 chr10:65382718 . . 0 17 hm5C_associated_SNPs_8613 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11129 DeepMRMD:1;iRNA_m5C:0.999536712157815 11130 chr10 65382718 65382718 1 + G A rs1255454 65382723 + 65382703 65382743 41 GATCCGCCCGCCTCGGCCTCCCAAACTTCTGGGATTACAGG GATCCGCCCGCCTCGACCTCCCAAACTTCTGGGATTACAGG < 41bp 1 0.481541018362962 1 0.348637461662292 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient REEP3 ENSG00000165476 UTR3 Human protein_coding chr10:65382723 chr10:65382718 . . 0 16 hm5C_associated_SNPs_8614 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643888693 1 0.999536712222613 hm5C_site_11130 DeepMRMD:1;iRNA_m5C:0.999536712222613 11131 chr10 65382718 65382718 1 + G A rs1255454 65382724 + 65382704 65382744 41 ATCCGCCCGCCTCGGCCTCCCAAACTTCTGGGATTACAGGC ATCCGCCCGCCTCGACCTCCCAAACTTCTGGGATTACAGGC < 41bp 1 0.556053118892106 1 0.380891352891922 experiment 0.887893762215788 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient REEP3 ENSG00000165476 UTR3 Human protein_coding chr10:65382724 chr10:65382718 . . 0 15 hm5C_associated_SNPs_8615 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11131 DeepMRMD:1;iRNA_m5C:0.999536712157815 11132 chr10 69524356 69524356 1 + T C rs377093107 69524336 + 69524316 69524356 41 GCGCAGGTTCGAACCCTGCTCGCTGCGGAAGCGGGTGCTCT GCGCAGGTTCGAACCCTGCTCGCTGCGGAAGCGGGTGCTCC < 41bp 1 0.353877939112641 1 0.346000611782074 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CTNNA3;DNAJC12 ENSG00000213606;ENSG00000225922 intergenic Human other chr10:69524336 chr10:69524356 . . 0 41 hm5C_associated_SNPs_8616 0 0 1 0 0 unknown 1 0.500231643920461 1 0.999536712159078 hm5C_site_11132 DeepMRMD:1;iRNA_m5C:0.999536712159078 11133 chr10 69524356 69524356 1 + T C rs377093107 69524347 + 69524327 69524367 41 AACCCTGCTCGCTGCGGAAGCGGGTGCTCTTATTTTTTCTA AACCCTGCTCGCTGCGGAAGCGGGTGCTCCTATTTTTTCTA < 41bp 1 0.592933008729231 1 0.805101275444031 experiment 0.814133982541537 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CTNNA3;DNAJC12 ENSG00000213606;ENSG00000225922 intergenic Human other chr10:69524347 chr10:69524356 . . 0 30 hm5C_associated_SNPs_8618 0 0 1 0 0 unknown 1 0.500231643921092 0.389797449111938 0.999536712157816 hm5C_site_11133 DeepMRMD:0.389797449111938;iRNA_m5C:0.999536712157816 11134 chr10 69524356 69524356 1 + T C rs377093107 69524353 + 69524333 69524373 41 GCTCGCTGCGGAAGCGGGTGCTCTTATTTTTTCTATTTTTT GCTCGCTGCGGAAGCGGGTGCTCCTATTTTTTCTATTTTTT < 41bp 1 0.143734238275567 1 0.212460726499557 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTNNA3;DNAJC12 ENSG00000213606;ENSG00000225922 intergenic Human other chr10:69524353 chr10:69524356 . . 0 24 hm5C_associated_SNPs_8619 0 0 1 0 0 unknown 1 0.500231643920997 1 0.999536712158007 hm5C_site_11134 DeepMRMD:1;iRNA_m5C:0.999536712158007 11135 chr10 69524356 69524356 1 + T C rs377093107 69524355 + 69524335 69524375 41 TCGCTGCGGAAGCGGGTGCTCTTATTTTTTCTATTTTTTTA TCGCTGCGGAAGCGGGTGCTCCTATTTTTTCTATTTTTTTA < 41bp 1 0.0542002355546604 1 0.0851903557777405 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTNNA3;DNAJC12 ENSG00000213606;ENSG00000225922 intergenic Human other chr10:69524355 chr10:69524356 . . 0 22 hm5C_associated_SNPs_8620 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11135 DeepMRMD:1;iRNA_m5C:0.999536712157815 11136 chr10 69524357 69524357 1 + T A rs367628342 69524341 + 69524321 69524361 41 GGTTCGAACCCTGCTCGCTGCGGAAGCGGGTGCTCTTATTT GGTTCGAACCCTGCTCGCTGCGGAAGCGGGTGCTCTAATTT < 41bp 1 0.667149827419959 1 0.390383243560791 experiment 0.665700345160082 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CTNNA3;DNAJC12 ENSG00000213606;ENSG00000225922 intergenic Human other chr10:69524341 chr10:69524357 . . 0 37 hm5C_associated_SNPs_8621 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11136 DeepMRMD:1;iRNA_m5C:0.999536712157815 11137 chr10 69524357 69524357 1 + T A rs367628342 69524347 + 69524327 69524367 41 AACCCTGCTCGCTGCGGAAGCGGGTGCTCTTATTTTTTCTA AACCCTGCTCGCTGCGGAAGCGGGTGCTCTAATTTTTTCTA < 41bp 1 0.63576414055661 1 0.880392491817474 experiment 0.728471718886781 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CTNNA3;DNAJC12 ENSG00000213606;ENSG00000225922 intergenic Human other chr10:69524347 chr10:69524357 . . 0 31 hm5C_associated_SNPs_8622 0 0 1 0 0 unknown 1 0.500231643921092 0.239215016365052 0.999536712157815 hm5C_site_11137 DeepMRMD:0.239215016365052;iRNA_m5C:0.999536712157815 11138 chr10 69524357 69524357 1 + T A rs367628342 69524353 + 69524333 69524373 41 GCTCGCTGCGGAAGCGGGTGCTCTTATTTTTTCTATTTTTT GCTCGCTGCGGAAGCGGGTGCTCTAATTTTTTCTATTTTTT < 41bp 1 0.217996778874506 1 0.522762298583984 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTNNA3;DNAJC12 ENSG00000213606;ENSG00000225922 intergenic Human other chr10:69524353 chr10:69524357 . . 0 25 hm5C_associated_SNPs_8623 0 0 1 0 0 unknown 1 0.500231643921092 0.954475402832032 0.999536712157815 hm5C_site_11138 DeepMRMD:0.954475402832032;iRNA_m5C:0.999536712157815 11139 chr10 69524357 69524357 1 + T A rs367628342 69524355 + 69524335 69524375 41 TCGCTGCGGAAGCGGGTGCTCTTATTTTTTCTATTTTTTTA TCGCTGCGGAAGCGGGTGCTCTAATTTTTTCTATTTTTTTA < 41bp 1 0.262965756465888 1 0.151960611343384 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTNNA3;DNAJC12 ENSG00000213606;ENSG00000225922 intergenic Human other chr10:69524355 chr10:69524357 . . 0 23 hm5C_associated_SNPs_8624 0 0 1 0 0 unknown 1 0.50023164392096 1 0.999536712158079 hm5C_site_11139 DeepMRMD:1;iRNA_m5C:0.999536712158079 11140 chr10 70098948 70098948 1 + A G rs2273903 70098955 + 70098935 70098975 41 TACGGCTATGGGAATGATGGCTTTGATGACAGAATGAGAGA TACGGCTATGGGAGTGATGGCTTTGATGACAGAATGAGAGA < 41bp 1 0.253363528430326 1 0.12833446264267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70098955 chr10:70098948 nonsynonymous SNV 0.995 1 14 hm5C_associated_SNPs_8626 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11140 DeepMRMD:1;iRNA_m5C:0.999536712157815 11141 chr10 70102722 70102722 1 + A G rs118111463 70102720 + 70102700 70102740 41 CATGTCATAGTCAATAAAAACAATCCTGCAGTTGGGTTTTG CATGTCATAGTCAATAAAAACAGTCCTGCAGTTGGGTTTTG < 41bp 1 0.401773481519884 1 0.490584641695023 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPH3 ENSG00000096746 UTR3 Human protein_coding chr10:70102720 chr10:70102722 . . 0 23 hm5C_associated_SNPs_8627 0 0 1 0 0 Cytosol 1 0.500231643925012 1 0.999536712149976 hm5C_site_11141 DeepMRMD:1;iRNA_m5C:0.999536712149976 11142 chr10 70742681 70742681 1 + C T rs537152748 70742667 + 70742647 70742687 41 TTAAAAGCACATTGTGCCTCCTTTTGACCACTTGCCAAGTC TTAAAAGCACATTGTGCCTCCTTTTGACCACTTGTCAAGTC < 41bp 1 0.0775665732909362 1 0.0393932163715363 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DDX21 ENSG00000165732 UTR3 Human protein_coding chr10:70742667 chr10:70742681 . . 0 35 hm5C_associated_SNPs_8628 0 0 1 1 0 Nucleus 1 0.500231643896323 1 0.999536712207353 hm5C_site_11142 DeepMRMD:1;iRNA_m5C:0.999536712207353 11143 chr10 71160964 71160964 1 + G A rs546581508 71160944 + 71160924 71160964 41 GCACTTCTCTCTTCAAGCGGCGACCCCCTACCCTCCCAGCG GCACTTCTCTCTTCAAGCGGCGACCCCCTACCCTCCCAGCA < 41bp 1 0.177235023271341 1 0.263866603374481 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HK1 ENSG00000156515 UTR3 Human protein_coding chr10:71160944 chr10:71160964 . . 0 41 hm5C_associated_SNPs_8631 0 0 1 0 0 chromatin 1 0.500231643921801 1 0.999536712156398 hm5C_site_11143 DeepMRMD:1;iRNA_m5C:0.999536712156398 11144 chr10 71161538 71161538 1 + T C rs5030886 71161553 + 71161533 71161573 41 TCCATTTGGATAAAAGGAACCAACCAACAAACAATGCCATC TCCATCTGGATAAAAGGAACCAACCAACAAACAATGCCATC < 41bp 1 0.399625805031009 1 0.436612129211426 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HK1 ENSG00000156515 UTR3 Human protein_coding chr10:71161553 chr10:71161538 . . 0 6 hm5C_associated_SNPs_8632 0 0 1 0 0 chromatin 1 0.500231643129227 1 0.999536713741546 hm5C_site_11144 DeepMRMD:1;iRNA_m5C:0.999536713741546 11145 chr10 71266933 71266933 1 + T C rs141427786 71266936 + 71266916 71266956 41 CCTCCCCTAAGAGGCTTTCCCCGAGGCAGCTCTGGAATCTG CCTCCCCTAAGAGGCTTCCCCCGAGGCAGCTCTGGAATCTG < 41bp 1 0.674308215280151 1 0.699535012245178 experiment 0.651383569439698 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSPAN15 ENSG00000099282 UTR3 Human protein_coding chr10:71266936 chr10:71266933 . . 0 18 hm5C_associated_SNPs_8634 0 0 1 0 0 Cytosol 1 0.500231643921093 0.600929975509644 0.999536712157815 hm5C_site_11145 DeepMRMD:0.600929975509644;iRNA_m5C:0.999536712157815 11146 chr10 71266938 71266938 1 + G A rs373828363 71266936 + 71266916 71266956 41 CCTCCCCTAAGAGGCTTTCCCCGAGGCAGCTCTGGAATCTG CCTCCCCTAAGAGGCTTTCCCCAAGGCAGCTCTGGAATCTG < 41bp 1 0.612092989563857 1 0.749075770378113 experiment 0.775814020872285 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSPAN15 ENSG00000099282 UTR3 Human protein_coding chr10:71266936 chr10:71266938 . . 0 23 hm5C_associated_SNPs_8635 0 0 1 0 0 Cytosol 1 0.500231643921092 0.501848459243774 0.999536712157817 hm5C_site_11146 DeepMRMD:0.501848459243774;iRNA_m5C:0.999536712157817 11147 chr10 72637871 72637871 1 + C T rs55659308 72637861 + 72637841 72637881 41 CAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCC CAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCTGGCC < 41bp 1 0.696978044213345 1 0.586958408355713 experiment 0.60604391157331 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SGPL1 ENSG00000166224 UTR3 Human protein_coding chr10:72637861 chr10:72637871 . . 0 31 hm5C_associated_SNPs_8637 0 0 1 0 0 Ribosome 1 0.500231638649987 0.826083183288574 0.999536722700025 hm5C_site_11147 DeepMRMD:0.826083183288574;iRNA_m5C:0.999536722700025 11148 chr10 73056484 73056484 1 + T C rs12783269 73056491 + 73056471 73056511 41 TATTCCAGCTGCATACCACTCTGGCAGAGGTGAGGGAAGTC TATTCCAGCTGCACACCACTCTGGCAGAGGTGAGGGAAGTC < 41bp 1 0.439357156415176 1 0.409312069416046 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNC5B ENSG00000107731 CDS Human protein_coding chr10:73056491 chr10:73056484 synonymous SNV . 0 14 hm5C_associated_SNPs_8638 0 0 1 0 1 nucleoplasm 1 0.50023228519195 1 0.9995354296161 hm5C_site_11148 DeepMRMD:1;iRNA_m5C:0.9995354296161 11149 chr10 73056490 73056490 1 + T A rs12783281 73056491 + 73056471 73056511 41 TATTCCAGCTGCATACCACTCTGGCAGAGGTGAGGGAAGTC TATTCCAGCTGCATACCACACTGGCAGAGGTGAGGGAAGTC < 41bp 1 0.364883821663164 1 0.0860143601894379 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNC5B ENSG00000107731 CDS Human protein_coding chr10:73056491 chr10:73056490 synonymous SNV . 0 20 hm5C_associated_SNPs_8639 0 0 1 0 1 nucleoplasm 1 0.500231645911775 1 0.99953670817645 hm5C_site_11149 DeepMRMD:1;iRNA_m5C:0.99953670817645 11150 chr10 73056496 73056496 1 + A G rs12781632 73056491 + 73056471 73056511 41 TATTCCAGCTGCATACCACTCTGGCAGAGGTGAGGGAAGTC TATTCCAGCTGCATACCACTCTGGCGGAGGTGAGGGAAGTC < 41bp 1 0.500080399522086 1 0.591829657554626 experiment 0.999839200955829 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNC5B ENSG00000107731 CDS Human protein_coding chr10:73056491 chr10:73056496 synonymous SNV . 0 26 hm5C_associated_SNPs_8640 0 0 0 0 1 nucleoplasm 1 0.500231643921092 0.816340684890748 0.999536712157815 hm5C_site_11150 DeepMRMD:0.816340684890748;iRNA_m5C:0.999536712157815 11151 chr10 73060790 73060790 1 + T C rs6480506 73060802 + 73060782 73060822 41 CAAGGATCTTGCAGCCAGCACAGAGGCCTCTTCAAAGGCCT CAAGGATCCTGCAGCCAGCACAGAGGCCTCTTCAAAGGCCT < 41bp 1 0.4855643649072 1 0.369366645812988 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UNC5B ENSG00000107731 UTR3 Human protein_coding chr10:73060802 chr10:73060790 . . 0 9 hm5C_associated_SNPs_8641 0 0 0 0 0 nucleoplasm 1 0.500231651798787 1 0.999536696402427 hm5C_site_11151 DeepMRMD:1;iRNA_m5C:0.999536696402427 11152 chr10 73061284 73061284 1 + C T rs527403262 73061294 + 73061274 73061314 41 AAGTGCCCATCCCATGGGCTCGGCCTCACTGGTCACTGTTA AAGTGCCCATTCCATGGGCTCGGCCTCACTGGTCACTGTTA < 41bp 1 0.31675149298101 1 0.0802626609802246 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UNC5B ENSG00000107731 UTR3 Human protein_coding chr10:73061294 chr10:73061284 . . 0 11 hm5C_associated_SNPs_8642 0 0 1 0 0 nucleoplasm 1 0.500231643920042 1 0.999536712159915 hm5C_site_11152 DeepMRMD:1;iRNA_m5C:0.999536712159915 11153 chr10 73111532 73111532 1 + G A rs16928737 73111516 + 73111496 73111536 41 CGGCATGACCGGCTCCTTTCCTATGAGGAACTCCCAGGCAC CGGCATGACCGGCTCCTTTCCTATGAGGAACTCCCAAGCAC < 41bp 1 0.496058874160721 1 0.344882547855377 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73111516 chr10:73111532 synonymous SNV . 0 37 hm5C_associated_SNPs_8643 2 0 0 0 1 chromatin 1 0.500231643913411 1 0.999536712173178 hm5C_site_11153 DeepMRMD:1;iRNA_m5C:0.999536712173178 not specified not specified 11154 chr10 73566027 73566027 1 + G C rs142857685 73566026 + 73566006 73566046 41 GATGACAACGAACCCCTTTTCGTGAGGCCTCCAGTGAGCTT GATGACAACGAACCCCTTTTCCTGAGGCCTCCAGTGAGCTT < 41bp 1 0.336960620660594 1 0.142078280448914 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73566026 chr10:73566027 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_8644 1 0 0 0 1 exosome 1 0.500231644033418 1 0.999536711933164 hm5C_site_11154 DeepMRMD:1;iRNA_m5C:0.999536711933164 not specified not specified 11155 chr10 73724266 73724266 1 + C G rs4148907 73724251 + 73724231 73724271 41 TGGCGCCGCTTCCCTTCCAGCGTGCCGACCGGCCCCGCAGC TGGCGCCGCTTCCCTTCCAGCGTGCCGACCGGCCCGGCAGC < 41bp 1 0.222081588535861 1 0.783223628997803 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST3 ENSG00000122863 UTR5 Human protein_coding chr10:73724251 chr10:73724266 . . 0 36 hm5C_associated_SNPs_8645 4 0 1 0 0 Ribosome 1 0.500231624295787 0.433552742004394 0.999536751408426 hm5C_site_11155 DeepMRMD:0.433552742004394;iRNA_m5C:0.999536751408426 Spondyloepiphyseal dysplasia with congenital joint dislocations Spondyloepiphyseal dysplasia with congenital joint dislocations 11156 chr10 73768236 73768236 1 + C T rs202242499 73768255 + 73768235 73768275 41 CCGGGGCCCCGTATGCCCCTCCTCGTGAAAGGCCTGCCCCG CTGGGGCCCCGTATGCCCCTCCTCGTGAAAGGCCTGCCCCG < 41bp 1 0.0565055908616442 1 0.237052023410797 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHST3 ENSG00000122863 UTR3 Human protein_coding chr10:73768255 chr10:73768236 . . 0 2 hm5C_associated_SNPs_8648 5 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11156 DeepMRMD:1;iRNA_m5C:0.999536712157815 Spondyloepiphyseal dysplasia with congenital joint dislocations Spondyloepiphyseal dysplasia with congenital joint dislocations 11157 chr10 73992862 73992862 1 + C A rs9275 73992860 + 73992840 73992880 41 AGCAGCTGCTGGGATTCACCCCCTCTTCAGGTTGATACTGC AGCAGCTGCTGGGATTCACCCCATCTTCAGGTTGATACTGC < 41bp 1 0.14953027577186 1 0.245775163173676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73992860 chr10:73992862 synonymous SNV . 0 23 hm5C_associated_SNPs_8649 0 0 1 0 0 Ribosome 1 0.500231644505227 1 0.999536710989547 hm5C_site_11157 DeepMRMD:1;iRNA_m5C:0.999536710989547 11158 chr10 73994068 73994068 1 + T A rs4293052 73994051 + 73994031 73994071 41 GCTGGGATTACAGGCGTGAGCCACCTTGCCCAGCCAATTTT GCTGGGATTACAGGCGTGAGCCACCTTGCCCAGCCAAATTT < 41bp 1 0.284950206939965 1 0.0959847271442413 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC16 ENSG00000166295 UTR3 Human protein_coding chr10:73994051 chr10:73994068 . . 0 38 hm5C_associated_SNPs_8650 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_11158 DeepMRMD:1;iRNA_m5C:0.999536712157815 11159 chr10 73994068 73994068 1 + T A rs4293052 73994052 + 73994032 73994072 41 CTGGGATTACAGGCGTGAGCCACCTTGCCCAGCCAATTTTT CTGGGATTACAGGCGTGAGCCACCTTGCCCAGCCAAATTTT < 41bp 1 0.362545399202342 1 0.46625280380249 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC16 ENSG00000166295 UTR3 Human protein_coding chr10:73994052 chr10:73994068 . . 0 37 hm5C_associated_SNPs_8651 0 0 0 0 0 Ribosome 1 0.500231689468496 1 0.999536621063007 hm5C_site_11159 DeepMRMD:1;iRNA_m5C:0.999536621063007 11160 chr10 73994928 73994928 1 + C T rs529124109 73994940 + 73994920 73994960 41 AATAAAGCCGGGCGTGGTGGCTCACGCCTGTAATCCCGGCA AATAAAGCTGGGCGTGGTGGCTCACGCCTGTAATCCCGGCA < 41bp 1 0.440485015106978 1 0.350456655025482 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC16 ENSG00000166295 UTR3 Human protein_coding chr10:73994940 chr10:73994928 . . 0 9 hm5C_associated_SNPs_8652 0 0 0 0 0 Ribosome 1 0.500231643902649 1 0.999536712194701 hm5C_site_11160 DeepMRMD:1;iRNA_m5C:0.999536712194701 11161 chr10 73994928 73994928 1 + C T rs529124109 73994946 + 73994926 73994966 41 GCCGGGCGTGGTGGCTCACGCCTGTAATCCCGGCACTTTGG GCTGGGCGTGGTGGCTCACGCCTGTAATCCCGGCACTTTGG < 41bp 1 0.306742626891491 1 0.120656430721283 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC16 ENSG00000166295 UTR3 Human protein_coding chr10:73994946 chr10:73994928 . . 0 3 hm5C_associated_SNPs_8655 0 0 0 0 0 Ribosome 1 0.500231588133761 1 0.999536823732478 hm5C_site_11161 DeepMRMD:1;iRNA_m5C:0.999536823732478 11162 chr10 73994928 73994928 1 + C T rs529124109 73994947 + 73994927 73994967 41 CCGGGCGTGGTGGCTCACGCCTGTAATCCCGGCACTTTGGG CTGGGCGTGGTGGCTCACGCCTGTAATCCCGGCACTTTGGG < 41bp 1 0.535573056050874 1 0.252457678318024 experiment 0.928853887898251 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC16 ENSG00000166295 UTR3 Human protein_coding chr10:73994947 chr10:73994928 . . 0 2 hm5C_associated_SNPs_8656 0 0 0 0 0 Ribosome 1 0.500231648480087 1 0.999536703039826 hm5C_site_11162 DeepMRMD:1;iRNA_m5C:0.999536703039826 11163 chr10 73994957 73994957 1 + G A rs559084362 73994940 + 73994920 73994960 41 AATAAAGCCGGGCGTGGTGGCTCACGCCTGTAATCCCGGCA AATAAAGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCA < 41bp 1 0.440524395963639 1 0.423316925764084 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC16 ENSG00000166295 UTR3 Human protein_coding chr10:73994940 chr10:73994957 . . 0 38 hm5C_associated_SNPs_8657 0 0 0 0 0 Ribosome 1 0.500231647327637 1 0.999536705344725 hm5C_site_11163 DeepMRMD:1;iRNA_m5C:0.999536705344725 11164 chr10 73994957 73994957 1 + G A rs559084362 73994946 + 73994926 73994966 41 GCCGGGCGTGGTGGCTCACGCCTGTAATCCCGGCACTTTGG GCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGG < 41bp 1 0.258766602712696 1 0.112310081720352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC16 ENSG00000166295 UTR3 Human protein_coding chr10:73994946 chr10:73994957 . . 0 32 hm5C_associated_SNPs_8660 0 0 0 0 0 Ribosome 1 0.500229614229957 1 0.999540771540086 hm5C_site_11164 DeepMRMD:1;iRNA_m5C:0.999540771540086 11165 chr10 73994957 73994957 1 + G A rs559084362 73994947 + 73994927 73994967 41 CCGGGCGTGGTGGCTCACGCCTGTAATCCCGGCACTTTGGG CCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGG < 41bp 1 0.611652459965833 1 0.275959610939026 experiment 0.776695080068334 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC16 ENSG00000166295 UTR3 Human protein_coding chr10:73994947 chr10:73994957 . . 0 31 hm5C_associated_SNPs_8661 0 0 0 0 0 Ribosome 1 0.500231643920753 1 0.999536712158494 hm5C_site_11165 DeepMRMD:1;iRNA_m5C:0.999536712158494 11166 chr10 73994957 73994957 1 + G A rs559084362 73994954 + 73994934 73994974 41 TGGTGGCTCACGCCTGTAATCCCGGCACTTTGGGAGGCTGA TGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGA < 41bp 1 0.367992047144354 1 0.180262088775635 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC16 ENSG00000166295 UTR3 Human protein_coding chr10:73994954 chr10:73994957 . . 0 24 hm5C_associated_SNPs_8662 0 0 0 0 0 Ribosome 1 0.500231643921538 1 0.999536712156924 hm5C_site_11166 DeepMRMD:1;iRNA_m5C:0.999536712156924 11167 chr10 73994957 73994957 1 + G A rs559084362 73994955 + 73994935 73994975 41 GGTGGCTCACGCCTGTAATCCCGGCACTTTGGGAGGCTGAG GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAG < 41bp 1 0.214164838735868 1 0.149532377719879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC16 ENSG00000166295 UTR3 Human protein_coding chr10:73994955 chr10:73994957 . . 0 23 hm5C_associated_SNPs_8663 0 0 0 0 0 Ribosome 1 0.500230806914478 1 0.999538386171043 hm5C_site_11167 DeepMRMD:1;iRNA_m5C:0.999538386171043 11168 chr10 74034847 74034847 1 + C T rs60688331 74034859 + 74034839 74034879 41 TCTCCCTTCCTCCCTGGCTTCAGCCAGTCCCTGACGCTGAG TCTCCCTTTCTCCCTGGCTTCAGCCAGTCCCTGACGCTGAG < 41bp 1 0.457790217942231 1 0.157561391592026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDIT4 ENSG00000168209 CDS Human protein_coding chr10:74034859 chr10:74034847 synonymous SNV . 0 9 hm5C_associated_SNPs_8667 0 0 1 0 0 Ribosome 1 0.500231967470933 1 0.999536065058133 hm5C_site_11168 DeepMRMD:1;iRNA_m5C:0.999536065058133 11169 chr10 75506674 75506674 1 + T C rs2306325 75506660 + 75506640 75506680 41 AGCCCATCTACCCAGGGTATCATCAGTCCAGCTATGGTGGG AGCCCATCTACCCAGGGTATCATCAGTCCAGCTACGGTGGG < 41bp 1 0.620361025234594 1 0.195469230413437 experiment 0.759277949530811 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75506660 chr10:75506674 synonymous SNV . 0 35 hm5C_associated_SNPs_8668 0 0 1 0 1 Nucleus 1 0.500231643351873 1 0.999536713296253 hm5C_site_11169 DeepMRMD:1;iRNA_m5C:0.999536713296253 11170 chr10 75506675 75506675 1 + G A rs538595432 75506660 + 75506640 75506680 41 AGCCCATCTACCCAGGGTATCATCAGTCCAGCTATGGTGGG AGCCCATCTACCCAGGGTATCATCAGTCCAGCTATAGTGGG < 41bp 1 0.593703942865643 1 0.33780500292778 experiment 0.812592114268714 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75506660 chr10:75506675 nonsynonymous SNV 0.655 0 36 hm5C_associated_SNPs_8669 0 0 1 0 1 Nucleus 1 0.500231643921609 1 0.999536712156781 hm5C_site_11170 DeepMRMD:1;iRNA_m5C:0.999536712156781 11171 chr10 75531700 75531700 1 + T C rs144190215 75531699 + 75531679 75531719 41 AGCTGGAGCGCCGTTCTCTCCTGCTGGGACACCGCTTGGGC AGCTGGAGCGCCGTTCTCTCCCGCTGGGACACCGCTTGGGC < 41bp 1 0.581017337104661 1 0.363900721073151 experiment 0.837965325790679 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC24C ENSG00000176986 UTR3 Human protein_coding chr10:75531699 chr10:75531700 . . 0 22 hm5C_associated_SNPs_8670 0 0 1 1 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11171 DeepMRMD:1;iRNA_m5C:0.999536712157815 11172 chr10 75557812 75557812 1 + C T rs118026121 75557805 + 75557785 75557825 41 CTGGCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTA CTGGCTCTCACGTACTTATTCTTCCCATGTTTCCTGGATTA < 41bp 1 0.10314556037784 1 0.0769293010234833 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557805 chr10:75557812 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_8671 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11172 DeepMRMD:1;iRNA_m5C:0.999536712157815 11173 chr10 75758085 75758085 1 + C A rs144080529 75758099 + 75758079 75758119 41 TGACCTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCA TGACCTAACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCA < 41bp 1 0.327997139122999 1 0.183728456497192 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758099 chr10:75758085 synonymous SNV . 0 7 hm5C_associated_SNPs_8672 0 0 1 0 1 Nucleus 1 0.500231350034859 1 0.999537299930281 hm5C_site_11173 DeepMRMD:1;iRNA_m5C:0.999537299930281 11174 chr10 75758085 75758085 1 + C A rs144080529 75758102 + 75758082 75758122 41 CCTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAGCA CCTAACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAGCA < 41bp 1 0.292428409272321 1 0.348948657512665 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758102 chr10:75758085 synonymous SNV . 0 4 hm5C_associated_SNPs_8674 0 0 1 0 1 Nucleus 1 0.500221288346369 1 0.999557423307263 hm5C_site_11174 DeepMRMD:1;iRNA_m5C:0.999557423307263 11175 chr10 75758085 75758085 1 + C A rs144080529 75758103 + 75758083 75758123 41 CTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAGCAA CTAACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAGCAA < 41bp 1 0.284555859331784 1 0.244079917669296 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758103 chr10:75758085 synonymous SNV . 0 3 hm5C_associated_SNPs_8675 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11175 DeepMRMD:1;iRNA_m5C:0.999536712157815 11176 chr10 75867074 75867074 1 + G C rs150385900 75867081 + 75867061 75867101 41 ACCTCAGGAGCCTGACTTCCCGCCGCCTCCACCAGACCTTG ACCTCAGGAGCCTCACTTCCCGCCGCCTCCACCAGACCTTG < 41bp 1 0.641270551572695 1 0.145939588546753 experiment 0.717458896854611 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75867081 chr10:75867074 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_8676 5 0 1 0 2 Nucleus 1 0.500231643921011 1 0.999536712157977 hm5C_site_11176 DeepMRMD:1;iRNA_m5C:0.999536712157977 not provided not provided 11177 chr10 75878075 75878075 1 + A G rs528724911 75878064 + 75878044 75878084 41 CATCAGAAAGGAATGGGGGCCTCTTCAAATTAGAAGACATT CATCAGAAAGGAATGGGGGCCTCTTCAAATTGGAAGACATT < 41bp 1 0.0414113826175798 1 0.128163188695908 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 UTR3 Human protein_coding chr10:75878064 chr10:75878075 . . 0 32 hm5C_associated_SNPs_8677 1 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11177 DeepMRMD:1;iRNA_m5C:0.999536712157815 Dilated Cardiomyopathy, Dominant Dilated Cardiomyopathy, Dominant 11178 chr10 79797035 79797035 1 + A G rs139181869 79797031 + 79797011 79797051 41 AATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTG AATGAAGAAAGTCAGGGGGACTGCGAAGGCCAATGTTGGTG < 41bp 1 0.533969310008342 1 0.228733658790588 experiment 0.932061379983316 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797031 chr10:79797035 synonymous SNV . 0 25 hm5C_associated_SNPs_8678 1 0 1 0 2 chromatin 1 0.500231643921107 1 0.999536712157787 hm5C_site_11178 DeepMRMD:1;iRNA_m5C:0.999536712157787 Diamond-Blackfan anemia Diamond-Blackfan anemia 11179 chr10 79797035 79797035 1 + A G rs139181869 79797034 + 79797014 79797054 41 GAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTG GAAGAAAGTCAGGGGGACTGCGAAGGCCAATGTTGGTGCTG < 41bp 1 0.669273325843238 1 0.673746287822723 experiment 0.661453348313524 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797034 chr10:79797035 synonymous SNV . 0 22 hm5C_associated_SNPs_8679 1 0 1 0 2 chromatin 1 0.500231643921203 0.652507424354554 0.999536712157593 hm5C_site_11179 DeepMRMD:0.652507424354554;iRNA_m5C:0.999536712157593 Diamond-Blackfan anemia Diamond-Blackfan anemia 11180 chr10 79797035 79797035 1 + A G rs139181869 79797041 + 79797021 79797061 41 GTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAA GTCAGGGGGACTGCGAAGGCCAATGTTGGTGCTGGCAAAAA < 41bp 1 0.373315076857292 1 0.121356964111328 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797041 chr10:79797035 synonymous SNV . 0 15 hm5C_associated_SNPs_8680 1 0 1 0 2 chromatin 1 0.500231643920341 1 0.999536712159318 hm5C_site_11180 DeepMRMD:1;iRNA_m5C:0.999536712159318 Diamond-Blackfan anemia Diamond-Blackfan anemia 11181 chr10 79797035 79797035 1 + A G rs139181869 79797052 + 79797032 79797072 41 TGCAAAGGCCAATGTTGGTGCTGGCAAAAAGGTATAGTTCA TGCGAAGGCCAATGTTGGTGCTGGCAAAAAGGTATAGTTCA < 41bp 1 0.340091059874814 1 0.210737943649292 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797052 chr10:79797035 synonymous SNV . 0 4 hm5C_associated_SNPs_8681 1 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_11181 DeepMRMD:1;iRNA_m5C:0.999536712157815 Diamond-Blackfan anemia Diamond-Blackfan anemia 11182 chr10 79797050 79797050 1 + T A rs151246531 79797031 + 79797011 79797051 41 AATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTG AATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGAG < 41bp 1 0.686077016812624 1 0.453272044658661 experiment 0.627845966374752 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797031 chr10:79797050 synonymous SNV . 0 40 hm5C_associated_SNPs_8682 0 0 1 0 2 chromatin 1 0.500231643998026 1 0.999536712003948 hm5C_site_11182 DeepMRMD:1;iRNA_m5C:0.999536712003948 11183 chr10 79797050 79797050 1 + T A rs151246531 79797034 + 79797014 79797054 41 GAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTG GAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGAGCTG < 41bp 1 0.633282711776073 1 0.538677453994751 experiment 0.733434576447854 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797034 chr10:79797050 synonymous SNV . 0 37 hm5C_associated_SNPs_8683 0 0 1 0 2 chromatin 1 0.500231643921093 0.922645092010498 0.999536712157815 hm5C_site_11183 DeepMRMD:0.922645092010498;iRNA_m5C:0.999536712157815 11184 chr10 79797050 79797050 1 + T A rs151246531 79797041 + 79797021 79797061 41 GTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAA GTCAGGGGGACTGCAAAGGCCAATGTTGGAGCTGGCAAAAA < 41bp 1 0.404256907337585 1 0.157859742641449 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797041 chr10:79797050 synonymous SNV . 0 30 hm5C_associated_SNPs_8684 0 0 1 0 2 chromatin 1 0.500231643919512 1 0.999536712160975 hm5C_site_11184 DeepMRMD:1;iRNA_m5C:0.999536712160975 11185 chr10 79797050 79797050 1 + T A rs151246531 79797052 + 79797032 79797072 41 TGCAAAGGCCAATGTTGGTGCTGGCAAAAAGGTATAGTTCA TGCAAAGGCCAATGTTGGAGCTGGCAAAAAGGTATAGTTCA < 41bp 1 0.352120494352138 1 0.317558974027634 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797052 chr10:79797050 synonymous SNV . 0 19 hm5C_associated_SNPs_8685 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_11185 DeepMRMD:1;iRNA_m5C:0.999536712157815 11186 chr10 79797050 79797050 1 + T A rs151246531 79797056 + 79797036 79797076 41 AAGGCCAATGTTGGTGCTGGCAAAAAGGTATAGTTCATTAA AAGGCCAATGTTGGAGCTGGCAAAAAGGTATAGTTCATTAA < 41bp 1 0.537261688789225 1 0.260467231273651 experiment 0.92547662242155 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797056 chr10:79797050 synonymous SNV . 0 15 hm5C_associated_SNPs_8686 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_11186 DeepMRMD:1;iRNA_m5C:0.999536712157815 11187 chr10 79799975 79799975 1 + G A rs139289215 79799966 + 79799946 79799986 41 CCCGCCACTGATTCAGTGAGCTGGAGATTGGATCACAGGTA CCCGCCACTGATTCAGTGAGCTGGAGATTAGATCACAGGTA < 41bp 1 0.698286090241184 1 0.559856414794922 experiment 0.603427819517632 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 UTR3 Human protein_coding chr10:79799966 chr10:79799975 . . 0 30 hm5C_associated_SNPs_8687 1 0 1 1 2 chromatin 1 0.500231643922168 0.880287170410156 0.999536712155664 hm5C_site_11187 DeepMRMD:0.880287170410156;iRNA_m5C:0.999536712155664 not specified not specified 11188 chr10 79799975 79799975 1 + G A rs139289215 79799981 + 79799961 79800001 41 GTGAGCTGGAGATTGGATCACAGGTATAATTCAAGCTTTTC GTGAGCTGGAGATTAGATCACAGGTATAATTCAAGCTTTTC < 41bp 1 0.481979322913641 1 0.442115902900696 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 UTR3 Human protein_coding chr10:79799981 chr10:79799975 . . 0 15 hm5C_associated_SNPs_8688 1 0 1 1 2 chromatin 1 0.500231631616989 1 0.999536736766022 hm5C_site_11188 DeepMRMD:1;iRNA_m5C:0.999536736766022 not specified not specified 11189 chr10 80828974 80828974 1 + C T rs76908738 80828964 + 80828944 80828984 41 GCGCTCCTCCCGGCCCGAGCCTGCCCTACCCGGCGGTGGCG GCGCTCCTCCCGGCCCGAGCCTGCCCTACCTGGCGGTGGCG < 41bp 1 0.254001795288021 1 0.210050791501999 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMIZ1 ENSG00000108175 UTR5 Human protein_coding chr10:80828964 chr10:80828974 . . 0 31 hm5C_associated_SNPs_8689 0 0 1 0 1 Nucleus 1 0.500231644102505 1 0.999536711794991 hm5C_site_11189 DeepMRMD:1;iRNA_m5C:0.999536711794991 11190 chr10 81074482 81074482 1 + A G rs142081906 81074474 + 81074454 81074494 41 AACAAAAAAAGCAACCAGGGCTATTTGTACAGTTGAAGGGG AACAAAAAAAGCAACCAGGGCTATTTGTGCAGTTGAAGGGG < 41bp 1 0.0443693042853525 1 0.283589869737625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZMIZ1 ENSG00000108175 UTR3 Human protein_coding chr10:81074474 chr10:81074482 . . 0 29 hm5C_associated_SNPs_8690 0 0 1 0 0 Nucleus 1 0.500231643921056 1 0.999536712157888 hm5C_site_11190 DeepMRMD:1;iRNA_m5C:0.999536712157888 11191 chr10 81074649 81074649 1 + G C rs538218333 81074638 + 81074618 81074658 41 GTCTGTGGCCTGGCAAGTGGCCACGCCCTGTGTCAGACCAT GTCTGTGGCCTGGCAAGTGGCCACGCCCTGTCTCAGACCAT < 41bp 1 0.130136313127316 1 0.197983056306839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ1 ENSG00000108175 UTR3 Human protein_coding chr10:81074638 chr10:81074649 . . 0 32 hm5C_associated_SNPs_8691 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_11191 DeepMRMD:1;iRNA_m5C:0.999536712157815 11192 chr10 81075062 81075062 1 + C T rs117137195 81075077 + 81075057 81075097 41 GCATCCGGGGCGGGAGCAAGCCCCAGGTTGTGACAGGTGCA GCATCTGGGGCGGGAGCAAGCCCCAGGTTGTGACAGGTGCA < 41bp 1 0.59994690315361 1 0.441521495580673 experiment 0.80010619369278 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZMIZ1 ENSG00000108175 UTR3 Human protein_coding chr10:81075077 chr10:81075062 . . 0 6 hm5C_associated_SNPs_8692 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_11192 DeepMRMD:1;iRNA_m5C:0.999536712157814 11193 chr10 81075062 81075062 1 + C T rs117137195 81075078 + 81075058 81075098 41 CATCCGGGGCGGGAGCAAGCCCCAGGTTGTGACAGGTGCAG CATCTGGGGCGGGAGCAAGCCCCAGGTTGTGACAGGTGCAG < 41bp 1 0.385282723607994 1 0.410506129264832 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZMIZ1 ENSG00000108175 UTR3 Human protein_coding chr10:81075078 chr10:81075062 . . 0 5 hm5C_associated_SNPs_8693 0 0 1 0 0 Nucleus 1 0.500230895917613 1 0.999538208164774 hm5C_site_11193 DeepMRMD:1;iRNA_m5C:0.999538208164774 11194 chr10 81075062 81075062 1 + C T rs117137195 81075079 + 81075059 81075099 41 ATCCGGGGCGGGAGCAAGCCCCAGGTTGTGACAGGTGCAGG ATCTGGGGCGGGAGCAAGCCCCAGGTTGTGACAGGTGCAGG < 41bp 1 0.539147028924613 1 0.75531131029129 experiment 0.921705942150775 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZMIZ1 ENSG00000108175 UTR3 Human protein_coding chr10:81075079 chr10:81075062 . . 0 4 hm5C_associated_SNPs_8694 0 0 1 0 0 Nucleus 1 0.500231643920979 0.48937737941742 0.999536712158043 hm5C_site_11194 DeepMRMD:0.48937737941742;iRNA_m5C:0.999536712158043 11195 chr10 81075062 81075062 1 + C T rs117137195 81075080 + 81075060 81075100 41 TCCGGGGCGGGAGCAAGCCCCAGGTTGTGACAGGTGCAGGT TCTGGGGCGGGAGCAAGCCCCAGGTTGTGACAGGTGCAGGT < 41bp 1 0.628902365062178 1 0.921364426612854 experiment 0.742195269875643 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZMIZ1 ENSG00000108175 UTR3 Human protein_coding chr10:81075080 chr10:81075062 . . 0 3 hm5C_associated_SNPs_8695 0 0 1 0 0 Nucleus 1 0.500231602504749 0.157271146774292 0.999536794990503 hm5C_site_11195 DeepMRMD:0.157271146774292;iRNA_m5C:0.999536794990503 11196 chr10 81075461 81075461 1 + G A rs371929144 81075450 + 81075430 81075470 41 TCCCCCAGAGAGCTACAGGTCTGCTCCCGACGGGCCTCGGG TCCCCCAGAGAGCTACAGGTCTGCTCCCGACAGGCCTCGGG < 41bp 1 0.308258929673738 1 0.0925452709197998 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZMIZ1 ENSG00000108175 UTR3 Human protein_coding chr10:81075450 chr10:81075461 . . 0 32 hm5C_associated_SNPs_8696 0 0 1 0 0 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_11196 DeepMRMD:1;iRNA_m5C:0.999536712157818 11197 chr10 81107295 81107295 1 + C G rs2233714 81107300 + 81107280 81107320 41 GTGTCCCGCCCGACCCGCGCCCGCGATGCTGGCGCTGCGCT GTGTCCCGCCCGACCGGCGCCCGCGATGCTGGCGCTGCGCT < 41bp 1 0.654334423490758 1 0.419701427221298 experiment 0.691331153018484 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIF ENSG00000108179 UTR5 Human protein_coding chr10:81107300 chr10:81107295 . . 0 16 hm5C_associated_SNPs_8698 0 0 1 0 0 Cytosol 1 0.500231684466844 1 0.999536631066312 hm5C_site_11197 DeepMRMD:1;iRNA_m5C:0.999536631066312 11198 chr10 81107295 81107295 1 + C G rs2233714 81107303 + 81107283 81107323 41 TCCCGCCCGACCCGCGCCCGCGATGCTGGCGCTGCGCTGCG TCCCGCCCGACCGGCGCCCGCGATGCTGGCGCTGCGCTGCG < 41bp 1 0.676119860477416 1 0.392065078020096 experiment 0.647760279045167 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PPIF ENSG00000108179 UTR5 Human protein_coding chr10:81107303 chr10:81107295 . . 0 13 hm5C_associated_SNPs_8699 0 0 1 0 0 Cytosol 1 0.500231645814786 1 0.999536708370428 hm5C_site_11198 DeepMRMD:1;iRNA_m5C:0.999536708370428 11199 chr10 81107457 81107457 1 + C G rs2233715 81107439 + 81107419 81107459 41 TCTTCCTCCTCCTCCGGGAACCCGCTCGTGTACCTGGACGT TCTTCCTCCTCCTCCGGGAACCCGCTCGTGTACCTGGAGGT < 41bp 1 0.319016777732405 1 0.128939747810364 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PPIF ENSG00000108179 CDS Human protein_coding chr10:81107439 chr10:81107457 nonsynonymous SNV 0.014 4 39 hm5C_associated_SNPs_8700 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11199 DeepMRMD:1;iRNA_m5C:0.999536712157815 11200 chr10 81107457 81107457 1 + C G rs2233715 81107440 + 81107420 81107460 41 CTTCCTCCTCCTCCGGGAACCCGCTCGTGTACCTGGACGTG CTTCCTCCTCCTCCGGGAACCCGCTCGTGTACCTGGAGGTG < 41bp 1 0.338563913638501 1 0.115131437778473 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PPIF ENSG00000108179 CDS Human protein_coding chr10:81107440 chr10:81107457 nonsynonymous SNV 0.014 4 38 hm5C_associated_SNPs_8701 0 0 1 0 1 Cytosol 1 0.500231644020208 1 0.999536711959584 hm5C_site_11200 DeepMRMD:1;iRNA_m5C:0.999536711959584 11201 chr10 81109501 81109501 1 + A G rs143055894 81109491 + 81109471 81109511 41 TCCACCTTCCACAGGGTGATCCCTTCCTTCATGTGCCAGGT TCCACCTTCCACAGGGTGATCCCTTCCTTCGTGTGCCAGGT < 41bp 1 0.081153073886785 1 0.169249534606934 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PPIF ENSG00000108179 CDS Human protein_coding chr10:81109491 chr10:81109501 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_8702 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11201 DeepMRMD:1;iRNA_m5C:0.999536712157815 11202 chr10 81273081 81273081 1 + A G rs150231945 81273079 + 81273059 81273099 41 TTGGCCAGGAGCGAGCGAAGCCATGGCCTTGGTGAAGCTGC TTGGCCAGGAGCGAGCGAAGCCGTGGCCTTGGTGAAGCTGC < 41bp 1 0.63134642724913 1 0.308468580245972 experiment 0.73730714550174 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5AL1 ENSG00000253626 UTR3 Human protein_coding chr10:81273079 chr10:81273081 . . 0 23 hm5C_associated_SNPs_8703 0 0 0 0 0 Ribosome 1 0.500228756192157 1 0.999542487615686 hm5C_site_11202 DeepMRMD:1;iRNA_m5C:0.999542487615686 11203 chr10 81273085 81273085 1 + C T rs1250784 81273079 + 81273059 81273099 41 TTGGCCAGGAGCGAGCGAAGCCATGGCCTTGGTGAAGCTGC TTGGCCAGGAGCGAGCGAAGCCATGGTCTTGGTGAAGCTGC < 41bp 1 0.532299025624419 1 0.123752593994141 experiment 0.935401948751161 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5AL1 ENSG00000253626 UTR3 Human protein_coding chr10:81273079 chr10:81273085 . . 0 27 hm5C_associated_SNPs_8705 0 0 0 0 0 Ribosome 1 0.500230248652729 1 0.999539502694542 hm5C_site_11203 DeepMRMD:1;iRNA_m5C:0.999539502694542 11204 chr10 81273091 81273091 1 + T A rs568822142 81273079 + 81273059 81273099 41 TTGGCCAGGAGCGAGCGAAGCCATGGCCTTGGTGAAGCTGC TTGGCCAGGAGCGAGCGAAGCCATGGCCTTGGAGAAGCTGC < 41bp 1 0.458209766099256 1 0.201596617698669 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5AL1 ENSG00000253626 UTR3 Human protein_coding chr10:81273079 chr10:81273091 . . 0 33 hm5C_associated_SNPs_8707 0 0 0 0 0 Ribosome 1 0.500237382226129 1 0.999525235547743 hm5C_site_11204 DeepMRMD:1;iRNA_m5C:0.999525235547743 11205 chr10 82192125 82192125 1 + A G rs1063161 82192132 + 82192112 82192152 41 CCAGGCTGGGTGCAGTGGCTCACACCTGTAATCCCAGCACT CCAGGCTGGGTGCGGTGGCTCACACCTGTAATCCCAGCACT < 41bp 1 0.647934700015129 1 0.177910506725311 experiment 0.704130599969742 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM213A ENSG00000122378 UTR3 Human protein_coding chr10:82192132 chr10:82192125 . . 0 14 hm5C_associated_SNPs_8709 0 0 1 0 0 Ribosome 1 0.500231643911696 1 0.999536712176608 hm5C_site_11205 DeepMRMD:1;iRNA_m5C:0.999536712176608 11206 chr10 88495016 88495016 1 + A C rs563605871 88495018 + 88494998 88495038 41 CAAAACTAGCAAAAAAAAAACAAAAAAACAAAAAAAAAACC CAAAACTAGCAAAAAAAACACAAAAAAACAAAAAAAAAACC < 41bp 1 0.492823426296378 1 0.626429796218872 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control LDB3 ENSG00000122367 UTR3 Human protein_coding chr10:88495018 chr10:88495016 . . 0 19 hm5C_associated_SNPs_8710 0 0 0 0 0 nucleus 1 0.500231600824768 0.747140407562256 0.999536798350463 hm5C_site_11206 DeepMRMD:0.747140407562256;iRNA_m5C:0.999536798350463 11207 chr10 88495016 88495016 1 + A C rs563605871 88495026 + 88495006 88495046 41 GCAAAAAAAAAACAAAAAAACAAAAAAAAAACCACTTAAAA GCAAAAAAAACACAAAAAAACAAAAAAAAAACCACTTAAAA < 41bp 1 0.681075642943033 1 0.778919696807861 experiment 0.637848714113933 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control LDB3 ENSG00000122367 UTR3 Human protein_coding chr10:88495026 chr10:88495016 . . 0 11 hm5C_associated_SNPs_8711 0 0 0 0 0 nucleus 1 0.500231683842075 0.442160606384278 0.999536632315849 hm5C_site_11207 DeepMRMD:0.442160606384278;iRNA_m5C:0.999536632315849 11208 chr10 88495017 88495017 1 + A C rs113733960 88495018 + 88494998 88495038 41 CAAAACTAGCAAAAAAAAAACAAAAAAACAAAAAAAAAACC CAAAACTAGCAAAAAAAAACCAAAAAAACAAAAAAAAAACC < 41bp 1 0.498320872718209 1 0.791188657283783 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control LDB3 ENSG00000122367 UTR3 Human protein_coding chr10:88495018 chr10:88495017 . . 0 20 hm5C_associated_SNPs_8712 0 0 0 0 0 nucleus 1 0.500230546636072 0.417622685432434 0.999538906727855 hm5C_site_11208 DeepMRMD:0.417622685432434;iRNA_m5C:0.999538906727855 11209 chr10 88495037 88495037 1 + C A rs193213375 88495018 + 88494998 88495038 41 CAAAACTAGCAAAAAAAAAACAAAAAAACAAAAAAAAAACC CAAAACTAGCAAAAAAAAAACAAAAAAACAAAAAAAAAAAC < 41bp 1 0.551416004735804 1 0.802130103111267 experiment 0.897167990528392 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control LDB3 ENSG00000122367 UTR3 Human protein_coding chr10:88495018 chr10:88495037 . . 0 40 hm5C_associated_SNPs_8714 0 0 0 1 0 nucleus 1 0.500478326663997 0.395739793777466 0.999043346672005 hm5C_site_11209 DeepMRMD:0.395739793777466;iRNA_m5C:0.999043346672005 11210 chr10 89419662 89419662 1 + T C rs558124262 89419676 + 89419656 89419696 41 TGCTGCTGCCGCCGCCGCCGCCGCCGTCCCTGCGTCCTTCG TGCTGCCGCCGCCGCCGCCGCCGCCGTCCCTGCGTCCTTCG < 41bp 1 0.530659182999889 1 0.476641893386841 experiment 0.938681634000221 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAPSS2 ENSG00000196566 ncRNA_exonic Human antisense chr10:89419676 chr10:89419662 . . 0 7 hm5C_associated_SNPs_8717 0 0 0 0 0 Cytosol 1 0.500231643921032 1 0.999536712157935 hm5C_site_11210 DeepMRMD:1;iRNA_m5C:0.999536712157935 11211 chr10 89419665 89419665 1 + C G rs10677560 89419676 + 89419656 89419696 41 TGCTGCTGCCGCCGCCGCCGCCGCCGTCCCTGCGTCCTTCG TGCTGCTGCGGCCGCCGCCGCCGCCGTCCCTGCGTCCTTCG < 41bp 1 0.529357643263918 1 0.473448246717453 experiment 0.941284713472164 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAPSS2 ENSG00000196566 ncRNA_exonic Human antisense chr10:89419676 chr10:89419665 . . 0 10 hm5C_associated_SNPs_8719 0 0 0 0 0 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_11211 DeepMRMD:1;iRNA_m5C:0.999536712157806 11212 chr10 89419668 89419668 1 + C T rs182505319 89419676 + 89419656 89419696 41 TGCTGCTGCCGCCGCCGCCGCCGCCGTCCCTGCGTCCTTCG TGCTGCTGCCGCTGCCGCCGCCGCCGTCCCTGCGTCCTTCG < 41bp 1 0.487770675626975 1 0.514401376247406 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAPSS2 ENSG00000196566 ncRNA_exonic Human antisense chr10:89419676 chr10:89419668 . . 0 13 hm5C_associated_SNPs_8721 0 0 0 0 1 Cytosol 1 0.500231643118939 0.971197247505188 0.999536713762121 hm5C_site_11212 DeepMRMD:0.971197247505188;iRNA_m5C:0.999536713762121 11213 chr10 89419671 89419671 1 + C T rs185811230 89419676 + 89419656 89419696 41 TGCTGCTGCCGCCGCCGCCGCCGCCGTCCCTGCGTCCTTCG TGCTGCTGCCGCCGCTGCCGCCGCCGTCCCTGCGTCCTTCG < 41bp 1 0.514408301463243 1 0.39618793129921 experiment 0.971183397073514 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAPSS2 ENSG00000196566 ncRNA_exonic Human antisense chr10:89419676 chr10:89419671 . . 0 16 hm5C_associated_SNPs_8723 0 0 0 0 1 Cytosol 1 0.500231643906983 1 0.999536712186035 hm5C_site_11213 DeepMRMD:1;iRNA_m5C:0.999536712186035 11214 chr10 93751991 93751991 1 + C T rs151057472 93751990 + 93751970 93752010 41 CACAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTC CACAAGTAGGCGAGGTCCTACTCCCAAAGCAGTAAAAGCTC < 41bp 1 0.379583287194945 1 0.361607432365417 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93751990 chr10:93751991 synonymous SNV . 0 22 hm5C_associated_SNPs_8727 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11214 DeepMRMD:1;iRNA_m5C:0.999536712157815 11215 chr10 94757362 94757362 1 + A G rs114345865 94757363 + 94757343 94757383 41 AGTTTAACTTAGATGTCATACAGTGTGAATGTAAGTACTAT AGTTTAACTTAGATGTCATGCAGTGTGAATGTAAGTACTAT < 41bp 1 0.204907041375102 1 0.150873154401779 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94757363 chr10:94757362 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_8728 0 0 1 1 1 Cytosol 1 0.500232335592764 1 0.999535328814471 hm5C_site_11215 DeepMRMD:1;iRNA_m5C:0.999535328814471 11216 chr10 95262980 95262980 1 + C T rs62642530 95262979 + 95262959 95262999 41 GAAGGCCAGATATAGTACTACCACATTGCTTGAACAGCTGG GAAGGCCAGATATAGTACTACTACATTGCTTGAACAGCTGG < 41bp 1 0.691503456944589 1 0.82366269826889 experiment 0.616993086110823 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262979 chr10:95262980 synonymous SNV . 0 22 hm5C_associated_SNPs_8731 0 0 1 0 0 Ribosome 1 0.500231643921093 0.35267460346222 0.999536712157814 hm5C_site_11216 DeepMRMD:0.35267460346222;iRNA_m5C:0.999536712157814 11217 chr10 95262980 95262980 1 + C T rs62642530 95262982 + 95262962 95263002 41 GGCCAGATATAGTACTACCACATTGCTTGAACAGCTGGAAG GGCCAGATATAGTACTACTACATTGCTTGAACAGCTGGAAG < 41bp 1 0.272130878132114 1 0.138934433460236 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262982 chr10:95262980 synonymous SNV . 0 19 hm5C_associated_SNPs_8732 0 0 1 0 0 Ribosome 1 0.500231935206801 1 0.999536129586398 hm5C_site_11217 DeepMRMD:1;iRNA_m5C:0.999536129586398 11218 chr10 95262981 95262981 1 + A G rs7080916 95262979 + 95262959 95262999 41 GAAGGCCAGATATAGTACTACCACATTGCTTGAACAGCTGG GAAGGCCAGATATAGTACTACCGCATTGCTTGAACAGCTGG < 41bp 1 0.551615414829586 1 0.16118460893631 experiment 0.896769170340827 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262979 chr10:95262981 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_8733 0 0 1 0 0 Ribosome 1 0.500231643986871 1 0.999536712026257 hm5C_site_11218 DeepMRMD:1;iRNA_m5C:0.999536712026257 11219 chr10 95262981 95262981 1 + A G rs7080916 95262980 + 95262960 95263000 41 AAGGCCAGATATAGTACTACCACATTGCTTGAACAGCTGGA AAGGCCAGATATAGTACTACCGCATTGCTTGAACAGCTGGA < 41bp 1 0.419717359469381 1 0.146150767803192 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262980 chr10:95262981 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_8734 0 0 1 0 0 Ribosome 1 0.500231654557234 1 0.999536690885532 hm5C_site_11219 DeepMRMD:1;iRNA_m5C:0.999536690885532 11220 chr10 95262981 95262981 1 + A G rs7080916 95262982 + 95262962 95263002 41 GGCCAGATATAGTACTACCACATTGCTTGAACAGCTGGAAG GGCCAGATATAGTACTACCGCATTGCTTGAACAGCTGGAAG < 41bp 1 0.255352599931551 1 0.18210157752037 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262982 chr10:95262981 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_8735 0 0 1 0 0 Ribosome 1 0.500231871427501 1 0.999536257144998 hm5C_site_11220 DeepMRMD:1;iRNA_m5C:0.999536257144998 11221 chr10 95653784 95653784 1 + C T rs565071219 95653766 + 95653746 95653786 41 CTGGCGCCAGACGGCACCGGCCGCTGGTAGAGCGCGTGCCG CTGGCGCCAGACGGCACCGGCCGCTGGTAGAGCGCGTGTCG < 41bp 1 0.625251867975766 1 0.466934025287628 experiment 0.749496264048468 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC35G1 ENSG00000176273 UTR5 Human protein_coding chr10:95653766 chr10:95653784 . . 0 39 hm5C_associated_SNPs_8736 0 0 1 0 0 exosome 1 0.500231644447592 1 0.999536711104816 hm5C_site_11221 DeepMRMD:1;iRNA_m5C:0.999536711104816 11222 chr10 97803409 97803409 1 + G A rs151011430 97803428 + 97803408 97803448 41 CGCAGCATGAGCGGGGCCGGCGTCCGCCGCACGACGGCGGG CACAGCATGAGCGGGGCCGGCGTCCGCCGCACGACGGCGGG < 41bp 1 0.551484404354681 1 0.377803325653076 experiment 0.897031191290639 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD1-AS1 ENSG00000226688 ncRNA_intronic Human antisense chr10:97803428 chr10:97803409 . . 0 2 hm5C_associated_SNPs_8737 0 0 1 0 1 unknown 1 0.500231643911871 1 0.999536712176258 hm5C_site_11222 DeepMRMD:1;iRNA_m5C:0.999536712176258 11223 chr10 99080523 99080523 1 + G C rs141543730 99080539 + 99080519 99080559 41 CAGGGTGCAGCCCAATCTGCCAGACTTAAAAAAACCATCTT CAGGCTGCAGCCCAATCTGCCAGACTTAAAAAAACCATCTT < 41bp 1 0.216947413349587 1 0.606897056102753 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAT1 ENSG00000165879 UTR3 Human protein_coding chr10:99080539 chr10:99080523 . . 0 5 hm5C_associated_SNPs_8738 0 0 1 0 0 Ribosome 1 0.50023164391666 0.786205887794494 0.99953671216668 hm5C_site_11223 DeepMRMD:0.786205887794494;iRNA_m5C:0.99953671216668 11224 chr10 99382326 99382326 1 + C G rs45628739 99382327 + 99382307 99382347 41 CCGGGTGTGGTGGTGCGTTCCTGTAGTCCCAGCTACTTGGG CCGGGTGTGGTGGTGCGTTGCTGTAGTCCCAGCTACTTGGG < 41bp 1 0.384608287184286 1 0.555396616458893 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MORN4 ENSG00000155252;ENSG00000171160;ENSG00000249967 intronic Human other chr10:99382327 chr10:99382326 . . 0 20 hm5C_associated_SNPs_8741 0 0 0 0 0 Nucleus 1 0.500231576856314 0.889206767082214 0.999536846287373 hm5C_site_11224 DeepMRMD:0.889206767082214;iRNA_m5C:0.999536846287373 11225 chr10 99475468 99475468 1 + C T rs192208208 99475453 + 99475433 99475473 41 CTGTTTGAAGATTTGGGGGGCGCCTTCTCTTTCTTCCCCAG CTGTTTGAAGATTTGGGGGGCGCCTTCTCTTTCTTTCCCAG < 41bp 1 0.196321394019088 1 0.139586001634598 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARVELD1 ENSG00000155254 UTR3 Human protein_coding chr10:99475453 chr10:99475468 . . 0 36 hm5C_associated_SNPs_8743 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11225 DeepMRMD:1;iRNA_m5C:0.999536712157815 11226 chr10 99496893 99496893 1 + T A rs112940454 99496911 + 99496891 99496931 41 CGTCCCGGAAGCGGCGGTGGCGGCCGCGGCGTAGGCGGAGG CGACCCGGAAGCGGCGGTGGCGGCCGCGGCGTAGGCGGAGG < 41bp 1 0.613254423825861 1 0.720927894115448 experiment 0.773491152348278 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZFYVE27 ENSG00000155256 UTR5 Human protein_coding chr10:99496911 chr10:99496893 . . 0 3 hm5C_associated_SNPs_8744 0 0 1 0 0 Ribosome 1 0.500231643921092 0.558144211769104 0.999536712157815 hm5C_site_11226 DeepMRMD:0.558144211769104;iRNA_m5C:0.999536712157815 11227 chr10 102123043 102123043 1 + G A rs560792 102123030 + 102123010 102123050 41 GACCACTCCTGTCCCTGTAGCTCAGTCATCAAAGCAGAAGT GACCACTCCTGTCCCTGTAGCTCAGTCATCAAAACAGAAGT < 41bp 1 0.48476319579345 1 0.0625534653663635 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCD ENSG00000256545 ncRNA_exonic Human other chr10:102123030 chr10:102123043 . . 0 34 hm5C_associated_SNPs_8745 0 0 1 0 0 Ribosome 1 0.500231599902586 1 0.999536800194829 hm5C_site_11227 DeepMRMD:1;iRNA_m5C:0.999536800194829 11228 chr10 102124121 102124121 1 + C T rs560355254 102124120 + 102124100 102124140 41 CTATAAGGTGCCTCAGTTTTCCTTCTGTTAAAATGGGGATA CTATAAGGTGCCTCAGTTTTCTTTCTGTTAAAATGGGGATA < 41bp 1 0.133123743466026 1 0.116926252841949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCD ENSG00000099194 UTR3 Human protein_coding chr10:102124120 chr10:102124121 . . 0 22 hm5C_associated_SNPs_8746 0 0 1 0 0 Ribosome 1 0.500231643920779 1 0.999536712158442 hm5C_site_11228 DeepMRMD:1;iRNA_m5C:0.999536712158442 11229 chr10 102242030 102242030 1 + G A rs9420786 102242029 + 102242009 102242049 41 CTCCTAGCTCTCTCCCCAGGCGGTGAAGGGCACCATGAAAC CTCCTAGCTCTCTCCCCAGGCAGTGAAGGGCACCATGAAAC < 41bp 1 0.386932178197503 1 0.235881328582764 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WNT8B ENSG00000075290 CDS Human protein_coding chr10:102242029 chr10:102242030 synonymous SNV . 0 22 hm5C_associated_SNPs_8747 0 0 0 0 1 exosome 1 0.500231643920994 1 0.999536712158012 hm5C_site_11229 DeepMRMD:1;iRNA_m5C:0.999536712158012 11230 chr10 102722916 102722916 1 + G A rs927302 102722897 + 102722877 102722917 41 GTGACCTGTTCTCCTGAGTGCTCTAGTGTCTCCAGTTGTGG GTGACCTGTTCTCCTGAGTGCTCTAGTGTCTCCAGTTGTAG < 41bp 1 0.50194531912594 1 0.171846002340317 experiment 0.996109361748121 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLF2 ENSG00000119906 UTR3 Human protein_coding chr10:102722897 chr10:102722916 . . 0 40 hm5C_associated_SNPs_8748 0 0 1 0 0 Nucleus 1 0.500231649577888 1 0.999536700844223 hm5C_site_11230 DeepMRMD:1;iRNA_m5C:0.999536700844223 11231 chr10 102743633 102743633 1 + C G rs539199769 102743634 + 102743614 102743654 41 GCCTGGAGGGCAGCTGTCTCCAGATCATCCCTGGGGAGGGA GCCTGGAGGGCAGCTGTCTGCAGATCATCCCTGGGGAGGGA < 41bp 1 0.558782804950468 1 0.722203850746155 experiment 0.882434390099065 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102743634 chr10:102743633 synonymous SNV . 0 20 hm5C_associated_SNPs_8749 0 0 0 0 0 nucleoplasm 1 0.500231643905203 0.55559229850769 0.999536712189595 hm5C_site_11231 DeepMRMD:0.55559229850769;iRNA_m5C:0.999536712189595 11232 chr10 102743654 102743654 1 + A G rs200801941 102743634 + 102743614 102743654 41 GCCTGGAGGGCAGCTGTCTCCAGATCATCCCTGGGGAGGGA GCCTGGAGGGCAGCTGTCTCCAGATCATCCCTGGGGAGGGG < 41bp 1 0.591262898234725 1 0.825843095779419 experiment 0.81747420353055 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102743634 chr10:102743654 synonymous SNV . 0 41 hm5C_associated_SNPs_8750 0 0 0 0 0 nucleoplasm 1 0.500231643921086 0.348313808441162 0.999536712157828 hm5C_site_11232 DeepMRMD:0.348313808441162;iRNA_m5C:0.999536712157828 11233 chr10 102762256 102762256 1 + C T rs752974 102762251 + 102762231 102762271 41 TGACACCACTGCCCTGCTTACAGGTCGCCTGCGAGGCCGCT TGACACCACTGCCCTGCTTACAGGTTGCCTGCGAGGCCGCT < 41bp 1 0.65366053654797 1 0.658779621124268 experiment 0.692678926904059 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LZTS2 ENSG00000107816 UTR5 Human protein_coding chr10:102762251 chr10:102762256 . . 0 26 hm5C_associated_SNPs_8751 0 0 1 0 0 Ribosome 1 0.500231643662869 0.682440757751464 0.999536712674262 hm5C_site_11233 DeepMRMD:0.682440757751464;iRNA_m5C:0.999536712674262 11234 chr10 102762431 102762431 1 + C T rs150691048 102762420 + 102762400 102762440 41 CCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCGCCACCACG CCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCTGCCACCACG < 41bp 1 0.367202285664729 1 0.555617392063141 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102762420 chr10:102762431 nonsynonymous SNV 0.523 0 32 hm5C_associated_SNPs_8752 0 0 1 0 0 Ribosome 1 0.500231643921098 0.888765215873718 0.999536712157805 hm5C_site_11234 DeepMRMD:0.888765215873718;iRNA_m5C:0.999536712157805 11235 chr10 103310574 103310574 1 + C A rs2270439 103310555 + 103310535 103310575 41 TCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACCC TCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACAC < 41bp 1 0.386147456508543 1 0.279950052499771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103310555 chr10:103310574 nonsynonymous SNV 0.885 2 40 hm5C_associated_SNPs_8757 0 0 0 0 1 chromatin 1 0.500231643566958 1 0.999536712866083 hm5C_site_11235 DeepMRMD:1;iRNA_m5C:0.999536712866083 11236 chr10 103825863 103825863 1 + G C rs200584437 103825852 + 103825832 103825872 41 TTCCTGGTGCCCACTGCCACCACCTGGCCTGGCGTGGCCCA TTCCTGGTGCCCACTGCCACCACCTGGCCTGCCGTGGCCCA < 41bp 1 0.57766115528176 1 0.692704677581787 experiment 0.844677689436481 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HPS6 ENSG00000166189 CDS Human protein_coding chr10:103825852 chr10:103825863 nonsynonymous SNV 0.705 1 32 hm5C_associated_SNPs_8758 2 0 1 0 0 Ribosome 1 0.50023164411854 0.614590644836426 0.99953671176292 hm5C_site_11236 DeepMRMD:0.614590644836426;iRNA_m5C:0.99953671176292 not specified not specified 11237 chr10 103827260 103827260 1 + G A rs373272114 103827278 + 103827258 103827298 41 CCGAGTTTGCCCAGCACCGCCGGCTTGATGCTCACCTCCCC CCAAGTTTGCCCAGCACCGCCGGCTTGATGCTCACCTCCCC < 41bp 1 0.548843417980821 1 0.692632853984833 experiment 0.902313164038358 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HPS6 ENSG00000166189 CDS Human protein_coding chr10:103827278 chr10:103827260 nonsynonymous SNV 0.641 2 3 hm5C_associated_SNPs_8759 0 0 1 0 0 Ribosome 1 0.500231643921092 0.614734292030334 0.999536712157815 hm5C_site_11237 DeepMRMD:0.614734292030334;iRNA_m5C:0.999536712157815 11238 chr10 103908217 103908217 1 + T C rs145965846 103908226 + 103908206 103908246 41 CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCCCCA CATCCTCATCACCCAGTTCTCGAAGCCGCTCACGATCCCCA < 41bp 1 0.521592633821309 1 0.890246093273163 experiment 0.956814732357383 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908226 chr10:103908217 nonsynonymous SNV 0.990 1 12 hm5C_associated_SNPs_8760 0 0 1 0 2 Cytosol 1 0.500231643921093 0.219507813453674 0.999536712157815 hm5C_site_11238 DeepMRMD:0.219507813453674;iRNA_m5C:0.999536712157815 11239 chr10 103917969 103917969 1 + C T rs139248308 103917963 + 103917943 103917983 41 AGCTCAGACTAAAGCCCCTCCCAAACCAGGTACTGTTTCTG AGCTCAGACTAAAGCCCCTCCCAAACTAGGTACTGTTTCTG < 41bp 1 0.224297244429916 1 0.220056593418121 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917963 chr10:103917969 nonsynonymous SNV 0.905 1 27 hm5C_associated_SNPs_8761 0 0 1 0 1 Nucleus 1 0.500231643920915 1 0.999536712158171 hm5C_site_11239 DeepMRMD:1;iRNA_m5C:0.999536712158171 11240 chr10 103919675 103919675 1 + G A rs112050395 103919665 + 103919645 103919685 41 TTAAACAGGTCCCTACAGTTCAGTCCCCCCGCCTTCTGCTC TTAAACAGGTCCCTACAGTTCAGTCCCCCCACCTTCTGCTC < 41bp 1 0.325803223465824 1 0.0851248204708099 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919665 chr10:103919675 synonymous SNV . 0 31 hm5C_associated_SNPs_8762 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11240 DeepMRMD:1;iRNA_m5C:0.999536712157815 11241 chr10 103920371 103920371 1 + C T rs544616078 103920384 + 103920364 103920404 41 AGAAAGGCTGACAGCAGCTCCAGTGAGGAAGAGAGCAGCTC AGAAAGGTTGACAGCAGCTCCAGTGAGGAAGAGAGCAGCTC < 41bp 1 0.57636922113163 1 0.198454320430756 experiment 0.847261557736741 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103920384 chr10:103920371 nonsynonymous SNV 0.960 3 8 hm5C_associated_SNPs_8763 0 0 1 0 0 Nucleus 1 0.500231643723332 1 0.999536712553337 hm5C_site_11241 DeepMRMD:1;iRNA_m5C:0.999536712553337 11242 chr10 104140355 104140355 1 + C A rs112809254 104140373 + 104140353 104140393 41 CCCTCGGCCCTCTGGGAGATCACCTGGGAACGCATTGACTG CCATCGGCCCTCTGGGAGATCACCTGGGAACGCATTGACTG < 41bp 1 0.431959308163286 1 0.0505266785621643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104140373 chr10:104140355 synonymous SNV . 0 3 hm5C_associated_SNPs_8764 0 0 0 0 1 Nucleus 1 0.500231633865834 1 0.999536732268332 hm5C_site_11242 DeepMRMD:1;iRNA_m5C:0.999536732268332 11243 chr10 104159196 104159196 1 + A G rs4919633 104159194 + 104159174 104159214 41 CCGGGGAGGAAGCCGCGGAGCCAAGCGCCCCCTCCAGGACC CCGGGGAGGAAGCCGCGGAGCCGAGCGCCCCCTCCAGGACC < 41bp 1 0.515970183626667 1 0.300097972154617 experiment 0.968059632746666 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104159194 chr10:104159196 synonymous SNV . 0 23 hm5C_associated_SNPs_8765 1 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_11243 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 11244 chr10 104160434 104160434 1 + A C rs4919634 104160433 + 104160413 104160453 41 ACTGTATCCAGTACACCTGGCAGTCCGAGCCCGAAGCCCTG ACTGTATCCAGTACACCTGGCCGTCCGAGCCCGAAGCCCTG < 41bp 1 0.0278060445360458 1 0.0597496330738068 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160433 chr10:104160434 synonymous SNV . 0 22 hm5C_associated_SNPs_8767 0 0 0 0 1 chromatin 1 0.500231631627562 1 0.999536736744876 hm5C_site_11244 DeepMRMD:1;iRNA_m5C:0.999536736744876 11245 chr10 104160439 104160439 1 + G A rs200092317 104160433 + 104160413 104160453 41 ACTGTATCCAGTACACCTGGCAGTCCGAGCCCGAAGCCCTG ACTGTATCCAGTACACCTGGCAGTCCAAGCCCGAAGCCCTG < 41bp 1 0.075818008421073 1 0.169123589992523 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160433 chr10:104160439 nonsynonymous SNV 0.879 0 27 hm5C_associated_SNPs_8768 0 0 0 0 1 chromatin 1 0.50023164162862 1 0.99953671674276 hm5C_site_11245 DeepMRMD:1;iRNA_m5C:0.99953671674276 11246 chr10 104181552 104181552 1 + G A rs200350493 104181567 + 104181547 104181587 41 GGTCCGCAGATCCCGCGGGCCGCATTGGCCCGGCTGCTGCG GGTCCACAGATCCCGCGGGCCGCATTGGCCCGGCTGCTGCG < 41bp 1 0.582833133435706 1 0.209132492542267 experiment 0.834333733128589 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXL15 ENSG00000107872 CDS Human protein_coding chr10:104181567 chr10:104181552 synonymous SNV . 0 6 hm5C_associated_SNPs_8770 0 0 1 0 1 Ribosome 1 0.500231649703906 1 0.999536700592187 hm5C_site_11246 DeepMRMD:1;iRNA_m5C:0.999536700592187 11247 chr10 104181578 104181578 1 + G A rs199729408 104181567 + 104181547 104181587 41 GGTCCGCAGATCCCGCGGGCCGCATTGGCCCGGCTGCTGCG GGTCCGCAGATCCCGCGGGCCGCATTGGCCCAGCTGCTGCG < 41bp 1 0.571278980895608 1 0.110635757446289 experiment 0.857442038208783 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXL15 ENSG00000107872 CDS Human protein_coding chr10:104181567 chr10:104181578 nonsynonymous SNV 0.533 0 32 hm5C_associated_SNPs_8772 0 0 1 0 1 Ribosome 1 0.500231643968849 1 0.999536712062303 hm5C_site_11247 DeepMRMD:1;iRNA_m5C:0.999536712062303 11248 chr10 104235956 104235956 1 + G A rs10883725 104235971 + 104235951 104235991 41 AGTAGGTGGGATTATAGGAGCGTGCCACCATGCCCGGCTAC AGTAGATGGGATTATAGGAGCGTGCCACCATGCCCGGCTAC < 41bp 1 0.29113289598766 1 0.548001229763031 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control MFSD13A ENSG00000138111 UTR3 Human protein_coding chr10:104235971 chr10:104235956 . . 0 6 hm5C_associated_SNPs_8773 0 0 0 0 0 Ribosome 1 0.500231643921092 0.903997540473938 0.999536712157815 hm5C_site_11248 DeepMRMD:0.903997540473938;iRNA_m5C:0.999536712157815 11249 chr10 104235972 104235972 1 + G A rs45597333 104235971 + 104235951 104235991 41 AGTAGGTGGGATTATAGGAGCGTGCCACCATGCCCGGCTAC AGTAGGTGGGATTATAGGAGCATGCCACCATGCCCGGCTAC < 41bp 1 0.255976121081417 1 0.570464074611664 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control MFSD13A ENSG00000138111 UTR3 Human protein_coding chr10:104235971 chr10:104235972 . . 0 22 hm5C_associated_SNPs_8774 0 0 0 1 0 Ribosome 1 0.500231643921092 0.859071850776672 0.999536712157815 hm5C_site_11249 DeepMRMD:0.859071850776672;iRNA_m5C:0.999536712157815 11250 chr10 104235978 104235978 1 + C T rs11595149 104235971 + 104235951 104235991 41 AGTAGGTGGGATTATAGGAGCGTGCCACCATGCCCGGCTAC AGTAGGTGGGATTATAGGAGCGTGCCATCATGCCCGGCTAC < 41bp 1 0.272739789206177 1 0.507806658744812 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control MFSD13A ENSG00000138111 UTR3 Human protein_coding chr10:104235971 chr10:104235978 . . 0 28 hm5C_associated_SNPs_8775 0 0 0 1 0 Ribosome 1 0.500231643921092 0.984386682510376 0.999536712157815 hm5C_site_11250 DeepMRMD:0.984386682510376;iRNA_m5C:0.999536712157815 11251 chr10 104417173 104417173 1 + T C rs528960543 104417154 + 104417134 104417174 41 TGGGGAATCTTCCTCCCCAGCCCCCGGGCTCGGGAGTTATG TGGGGAATCTTCCTCCCCAGCCCCCGGGCTCGGGAGTTACG < 41bp 1 0.109549828790135 1 0.0160763561725616 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM8 ENSG00000171206 UTR3 Human protein_coding chr10:104417154 chr10:104417173 . . 0 40 hm5C_associated_SNPs_8776 0 0 1 0 0 Endoplasmic reticulum 1 0.500231649101702 1 0.999536701796595 hm5C_site_11251 DeepMRMD:1;iRNA_m5C:0.999536701796595 11252 chr10 104417173 104417173 1 + T C rs528960543 104417155 + 104417135 104417175 41 GGGGAATCTTCCTCCCCAGCCCCCGGGCTCGGGAGTTATGC GGGGAATCTTCCTCCCCAGCCCCCGGGCTCGGGAGTTACGC < 41bp 1 0.319101486951515 1 0.0960110723972321 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM8 ENSG00000171206 UTR3 Human protein_coding chr10:104417155 chr10:104417173 . . 0 39 hm5C_associated_SNPs_8777 0 0 1 0 0 Endoplasmic reticulum 1 0.500231641547609 1 0.999536716904782 hm5C_site_11252 DeepMRMD:1;iRNA_m5C:0.999536716904782 11253 chr10 104417173 104417173 1 + T C rs528960543 104417156 + 104417136 104417176 41 GGGAATCTTCCTCCCCAGCCCCCGGGCTCGGGAGTTATGCA GGGAATCTTCCTCCCCAGCCCCCGGGCTCGGGAGTTACGCA < 41bp 1 0.487110715129121 1 0.64250248670578 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM8 ENSG00000171206 UTR3 Human protein_coding chr10:104417156 chr10:104417173 . . 0 38 hm5C_associated_SNPs_8778 0 0 1 0 0 Endoplasmic reticulum 1 0.500231646131938 0.71499502658844 0.999536707736125 hm5C_site_11253 DeepMRMD:0.71499502658844;iRNA_m5C:0.999536707736125 11254 chr10 104417173 104417173 1 + T C rs528960543 104417157 + 104417137 104417177 41 GGAATCTTCCTCCCCAGCCCCCGGGCTCGGGAGTTATGCAT GGAATCTTCCTCCCCAGCCCCCGGGCTCGGGAGTTACGCAT < 41bp 1 0.591082819869691 1 0.478558659553528 experiment 0.817834360260618 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM8 ENSG00000171206 UTR3 Human protein_coding chr10:104417157 chr10:104417173 . . 0 37 hm5C_associated_SNPs_8779 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643699763 1 0.999536712600474 hm5C_site_11254 DeepMRMD:1;iRNA_m5C:0.999536712600474 11255 chr10 104417173 104417173 1 + T C rs528960543 104417158 + 104417138 104417178 41 GAATCTTCCTCCCCAGCCCCCGGGCTCGGGAGTTATGCATC GAATCTTCCTCCCCAGCCCCCGGGCTCGGGAGTTACGCATC < 41bp 1 0.652747304850106 1 0.907199561595917 experiment 0.694505390299788 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control TRIM8 ENSG00000171206 UTR3 Human protein_coding chr10:104417158 chr10:104417173 . . 0 36 hm5C_associated_SNPs_8780 0 0 1 0 0 Endoplasmic reticulum 1 0.500231656401444 0.185600876808166 0.999536687197111 hm5C_site_11255 DeepMRMD:0.185600876808166;iRNA_m5C:0.999536687197111 11256 chr10 104503829 104503829 1 + C T rs112090972 104503844 + 104503824 104503864 41 GGCTCCTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTG GGCTCTTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTG < 41bp 1 0.466030277651979 1 0.0699911117553711 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WBP1L ENSG00000166272 CDS Human protein_coding chr10:104503844 chr10:104503829 synonymous SNV . 0 6 hm5C_associated_SNPs_8781 0 0 1 0 1 chromatin 1 0.500205195313027 1 0.999589609373945 hm5C_site_11256 DeepMRMD:1;iRNA_m5C:0.999589609373945 11257 chr10 104503829 104503829 1 + C T rs112090972 104503846 + 104503826 104503866 41 CTCCTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTGCC CTCTTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTGCC < 41bp 1 0.165421725785576 1 0.332798272371292 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control WBP1L ENSG00000166272 CDS Human protein_coding chr10:104503846 chr10:104503829 synonymous SNV . 0 4 hm5C_associated_SNPs_8782 0 0 1 0 1 chromatin 1 0.500231643155133 1 0.999536713689734 hm5C_site_11257 DeepMRMD:1;iRNA_m5C:0.999536713689734 11258 chr10 104503829 104503829 1 + C T rs112090972 104503847 + 104503827 104503867 41 TCCTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTGCCC TCTTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTGCCC < 41bp 1 0.612567637013385 1 0.249153912067413 experiment 0.774864725973231 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control WBP1L ENSG00000166272 CDS Human protein_coding chr10:104503847 chr10:104503829 synonymous SNV . 0 3 hm5C_associated_SNPs_8783 0 0 1 0 1 chromatin 1 0.500231644561127 1 0.999536710877746 hm5C_site_11258 DeepMRMD:1;iRNA_m5C:0.999536710877746 11259 chr10 104629236 104629236 1 + G C rs17881215 104629248 + 104629228 104629268 41 CAGGAGCTGGCTGCGGGAGCCCGCCGTCCTGAGTCGCAGGC CAGGAGCTCGCTGCGGGAGCCCGCCGTCCTGAGTCGCAGGC < 41bp 1 0.219579842175288 1 0.442492216825485 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BORCS7-ASMT ENSG00000270316 intronic Human protein_coding chr10:104629248 chr10:104629236 . . 0 9 hm5C_associated_SNPs_8785 0 0 0 0 0 exosome 1 0.50023164392549 1 0.999536712149021 hm5C_site_11259 DeepMRMD:1;iRNA_m5C:0.999536712149021 11260 chr10 104678350 104678350 1 + G A rs76057237 104678357 + 104678337 104678377 41 AGCGCTCGCGGCCGGGGGATCCTGCAGGCGGCTGCGGGGCG AGCGCTCGCGGCCAGGGGATCCTGCAGGCGGCTGCGGGGCG < 41bp 1 0.247640768804326 1 0.415396928787231 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104678357 chr10:104678350 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_8786 1 0 1 0 0 Ribosome 1 0.500231644012297 1 0.999536711975406 hm5C_site_11260 DeepMRMD:1;iRNA_m5C:0.999536711975406 Renal Hypomagnesemia, Dominant Renal Hypomagnesemia, Dominant 11261 chr10 105048217 105048217 1 + A C rs34440112 105048230 + 105048210 105048250 41 ACCTAGAATCCTCAGTGCTACAACCTCCAAAGTCTCATCCA ACCTAGACTCCTCAGTGCTACAACCTCCAAAGTCTCATCCA < 41bp 1 0.274737147886872 1 0.243454247713089 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INA ENSG00000148798 CDS Human protein_coding chr10:105048230 chr10:105048217 nonsynonymous SNV 0.967 1 8 hm5C_associated_SNPs_8787 0 0 0 0 0 exosome 1 0.500231643921334 1 0.999536712157333 hm5C_site_11261 DeepMRMD:1;iRNA_m5C:0.999536712157333 11262 chr10 105184858 105184858 1 + G A rs117992169 105184840 + 105184820 105184860 41 GCCACCTGGCAGCTTTCTCCCTGACCTCTCACCTCAACGAC GCCACCTGGCAGCTTTCTCCCTGACCTCTCACCTCAACAAC < 41bp 1 0.269558907595505 1 0.0863568484783173 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105184840 chr10:105184858 nonsynonymous SNV 0.998 3 39 hm5C_associated_SNPs_8788 0 0 1 0 0 Nucleus 1 0.500231643919986 1 0.999536712160028 hm5C_site_11262 DeepMRMD:1;iRNA_m5C:0.999536712160028 11263 chr10 105203006 105203006 1 + C T rs148181718 105203022 + 105203002 105203042 41 AGGTCTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCAAA AGGTTTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCAAA < 41bp 1 0.260144087242074 1 0.872816562652588 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203022 chr10:105203006 synonymous SNV . 0 5 hm5C_associated_SNPs_8789 0 0 1 0 2 Nucleus 1 0.500231644651537 0.254366874694824 0.999536710696926 hm5C_site_11263 DeepMRMD:0.254366874694824;iRNA_m5C:0.999536710696926 11264 chr10 105203030 105203030 1 + C T rs371227965 105203022 + 105203002 105203042 41 AGGTCTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCAAA AGGTCTTTGAGCGAGCCGTGCAGTACAATGAGCCTCTCAAA < 41bp 1 0.257300389698406 1 0.804027318954468 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203022 chr10:105203030 synonymous SNV . 0 29 hm5C_associated_SNPs_8790 0 0 1 0 1 Nucleus 1 0.500231643923933 0.391945362091064 0.999536712152135 hm5C_site_11264 DeepMRMD:0.391945362091064;iRNA_m5C:0.999536712152135 11265 chr10 105344756 105344756 1 + T C rs2236209 105344747 + 105344727 105344767 41 CCCGGCACGCTGCGGCCGGCCGACCTGCCTTTCAGCCCTGA CCCGGCACGCTGCGGCCGGCCGACCTGCCCTTCAGCCCTGA < 41bp 1 0.382284223549429 1 0.517897605895996 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NEURL1 ENSG00000107954 CDS Human protein_coding chr10:105344747 chr10:105344756 synonymous SNV . 0 30 hm5C_associated_SNPs_8791 0 0 0 0 0 Nucleus 1 0.500231643930729 0.964204788208008 0.999536712138542 hm5C_site_11265 DeepMRMD:0.964204788208008;iRNA_m5C:0.999536712138542 11266 chr10 105344756 105344756 1 + T C rs2236209 105344751 + 105344731 105344771 41 GCACGCTGCGGCCGGCCGACCTGCCTTTCAGCCCTGAGGCC GCACGCTGCGGCCGGCCGACCTGCCCTTCAGCCCTGAGGCC < 41bp 1 0.431553937505943 1 0.689277172088623 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NEURL1 ENSG00000107954 CDS Human protein_coding chr10:105344751 chr10:105344756 synonymous SNV . 0 26 hm5C_associated_SNPs_8792 0 0 0 0 0 Nucleus 1 0.500231643898484 0.621445655822754 0.999536712203033 hm5C_site_11266 DeepMRMD:0.621445655822754;iRNA_m5C:0.999536712203033 11267 chr10 105350138 105350138 1 + G A rs561344400 105350148 + 105350128 105350168 41 AGCCCGTTGCGGTGGCCCATCCCGCATACCCATCTTCTCGG AGCCCGTTGCAGTGGCCCATCCCGCATACCCATCTTCTCGG < 41bp 1 0.298868156503621 1 0.266836941242218 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEURL1 ENSG00000107954 UTR3 Human protein_coding chr10:105350148 chr10:105350138 . . 0 11 hm5C_associated_SNPs_8793 0 0 0 0 0 Nucleus 1 0.500231640508907 1 0.999536718982186 hm5C_site_11267 DeepMRMD:1;iRNA_m5C:0.999536718982186 11268 chr10 106014235 106014235 1 + T A rs17881389 106014255 + 106014235 106014275 41 TTTGGAGAGAACGCTCTGGACCGGTGAGTGAGCCATGAGGT ATTGGAGAGAACGCTCTGGACCGGTGAGTGAGCCATGAGGT < 41bp 1 0.62541403098896 1 0.239732801914215 experiment 0.749171938022079 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GSTO1 ENSG00000148834 UTR5 Human protein_coding chr10:106014255 chr10:106014235 . . 0 1 hm5C_associated_SNPs_8794 0 0 0 0 1 Ribosome 1 0.504324857210957 1 0.991350285578086 hm5C_site_11268 DeepMRMD:1;iRNA_m5C:0.991350285578086 11269 chr10 108729814 108729814 1 + C T rs539244001 108729830 + 108729810 108729850 41 TTCTCGTCTGATCTCGGAAGCTAAGCACGGTCGGGCCTGGT TTCTTGTCTGATCTCGGAAGCTAAGCACGGTCGGGCCTGGT < 41bp 1 0.215050664029928 1 0.124566972255707 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SORCS1 ENSG00000200626 ncRNA_exonic Human rRNA chr10:108729830 chr10:108729814 . . 0 5 hm5C_associated_SNPs_8796 0 0 1 0 0 chromatin 1 0.500231643921152 1 0.999536712157697 hm5C_site_11269 DeepMRMD:1;iRNA_m5C:0.999536712157697 11270 chr10 108729824 108729824 1 + C T rs10884395 108729830 + 108729810 108729850 41 TTCTCGTCTGATCTCGGAAGCTAAGCACGGTCGGGCCTGGT TTCTCGTCTGATCTTGGAAGCTAAGCACGGTCGGGCCTGGT < 41bp 1 0.220878715540105 1 0.119211614131927 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SORCS1 ENSG00000200626 ncRNA_exonic Human rRNA chr10:108729830 chr10:108729824 . . 0 15 hm5C_associated_SNPs_8797 0 0 1 0 0 chromatin 1 0.500231644144617 1 0.999536711710765 hm5C_site_11270 DeepMRMD:1;iRNA_m5C:0.999536711710765 11271 chr10 112257667 112257667 1 + C T rs537973397 112257676 + 112257656 112257696 41 GGAATCCCCGGCTTCTAGGGCGGCGAGCGGCCGGGCTGGCT GGAATCCCCGGTTTCTAGGGCGGCGAGCGGCCGGGCTGGCT < 41bp 1 0.633441478216901 1 0.564083993434906 experiment 0.733117043566198 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DUSP5 ENSG00000138166 UTR5 Human protein_coding chr10:112257676 chr10:112257667 . . 0 12 hm5C_associated_SNPs_8798 0 0 0 0 0 Cytosol 1 0.500231643921093 0.871832013130188 0.999536712157815 hm5C_site_11271 DeepMRMD:0.871832013130188;iRNA_m5C:0.999536712157815 11272 chr10 112270097 112270097 1 + C T rs565671192 112270091 + 112270071 112270111 41 GACATGCAGGGTGCCTACTGCACATTCCCTGCCTCGGTGCT GACATGCAGGGTGCCTACTGCACATTTCCTGCCTCGGTGCT < 41bp 1 0.290335978336668 1 0.264678299427032 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DUSP5 ENSG00000138166 CDS Human protein_coding chr10:112270091 chr10:112270097 synonymous SNV . 0 27 hm5C_associated_SNPs_8799 0 0 0 0 0 Cytosol 1 0.500227647511215 1 0.99954470497757 hm5C_site_11272 DeepMRMD:1;iRNA_m5C:0.99954470497757 11273 chr10 112361870 112361870 1 + A G rs2419565 112361869 + 112361849 112361889 41 GTTAGATAGGGGTTACAAATCAATCATGGAACTGATGAATG GTTAGATAGGGGTTACAAATCGATCATGGAACTGATGAATG < 41bp 1 0.326963104589173 1 0.207907795906067 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112361869 chr10:112361870 synonymous SNV . 0 22 hm5C_associated_SNPs_8800 2 0 1 0 1 Ribosome 1 0.500231682657814 1 0.999536634684372 hm5C_site_11273 DeepMRMD:1;iRNA_m5C:0.999536634684372 not specified not specified 11274 chr10 114711293 114711293 1 + A C rs569153544 114711291 + 114711271 114711311 41 AAGGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC AAGGGGCCACCGTATCCCGGCTCCCCCTTCATCATGATCCC < 41bp 1 0.428348017411432 1 0.0718978345394135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711291 chr10:114711293 nonsynonymous SNV 0.990 2 23 hm5C_associated_SNPs_8801 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_11274 DeepMRMD:1;iRNA_m5C:0.999536712157813 11275 chr10 115485158 115485158 1 + C T rs537094698 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATACAAATGCCGCCTGCTTCGCTTGCATCC < 41bp 1 0.234327236910998 1 0.250596910715103 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485158 synonymous SNV . 0 34 hm5C_associated_SNPs_8802 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11275 DeepMRMD:1;iRNA_m5C:0.999536712157815 11276 chr10 115674064 115674064 1 + T C rs563937844 115674046 + 115674026 115674066 41 AGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTAC AGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATCAC < 41bp 1 0.194295590859973 1 0.736319661140442 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NHLRC2;ADRB1 ENSG00000196865 UTR3 Human protein_coding chr10:115674046 chr10:115674064 . . 0 39 hm5C_associated_SNPs_8803 0 0 0 0 0 unknown 1 0.500231626963811 0.527360677719116 0.999536746072378 hm5C_site_11276 DeepMRMD:0.527360677719116;iRNA_m5C:0.999536746072378 11277 chr10 115674064 115674064 1 + T C rs563937844 115674048 + 115674028 115674068 41 CAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG CAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATCACAG < 41bp 1 0.189517205933386 1 0.223726034164429 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NHLRC2;ADRB1 ENSG00000196865 UTR3 Human protein_coding chr10:115674048 chr10:115674064 . . 0 37 hm5C_associated_SNPs_8804 0 0 0 0 0 unknown 1 0.50023156385556 1 0.99953687228888 hm5C_site_11277 DeepMRMD:1;iRNA_m5C:0.99953687228888 11278 chr10 115674064 115674064 1 + T C rs563937844 115674049 + 115674029 115674069 41 AATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGG AATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATCACAGG < 41bp 1 0.363156233352109 1 0.462234556674957 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NHLRC2;ADRB1 ENSG00000196865 UTR3 Human protein_coding chr10:115674049 chr10:115674064 . . 0 36 hm5C_associated_SNPs_8805 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11278 DeepMRMD:1;iRNA_m5C:0.999536712157815 11279 chr10 115674071 115674071 1 + G A rs147311219 115674057 + 115674037 115674077 41 TGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTCTGCC TGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATCTGCC < 41bp 1 0.688321349840771 1 0.616297841072083 experiment 0.623357300318458 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NHLRC2;ADRB1 ENSG00000196865 UTR3 Human protein_coding chr10:115674057 chr10:115674071 . . 0 35 hm5C_associated_SNPs_8807 0 0 0 0 0 unknown 1 0.500231643921092 0.767404317855834 0.999536712157815 hm5C_site_11279 DeepMRMD:0.767404317855834;iRNA_m5C:0.999536712157815 11280 chr10 118306823 118306823 1 + G A rs568629341 118306831 + 118306811 118306851 41 GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC GAAGTTTGCTACAAAAGACTCGGCTGCTTCAGTGATGACTC < 41bp 1 0.636034137815821 1 0.147736430168152 experiment 0.727931724368358 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306831 chr10:118306823 nonsynonymous SNV 0.478 1 13 hm5C_associated_SNPs_8809 0 0 0 0 1 unknown 1 0.500231630750193 1 0.999536738499615 hm5C_site_11280 DeepMRMD:1;iRNA_m5C:0.999536738499615 11281 chr10 118306855 118306855 1 + A C rs76246039 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGACTCCCCCTGGTCAGGAATTAC < 41bp 1 0.279522546751616 1 0.10185906291008 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306855 synonymous SNV . 0 27 hm5C_associated_SNPs_8810 0 0 0 0 1 unknown 1 0.500231646802393 1 0.999536706395213 hm5C_site_11281 DeepMRMD:1;iRNA_m5C:0.999536706395213 11282 chr10 118306855 118306855 1 + A C rs76246039 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGACTCCCCCTGGTCAGGAATTACGG < 41bp 1 0.28329594041177 1 0.0655821859836578 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306855 synonymous SNV . 0 25 hm5C_associated_SNPs_8811 0 0 0 0 1 unknown 1 0.500231643921926 1 0.999536712156148 hm5C_site_11282 DeepMRMD:1;iRNA_m5C:0.999536712156148 11283 chr10 118306855 118306855 1 + A C rs76246039 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCCTGGTCAGGAATTACGGAA < 41bp 1 0.33412336784323 1 0.148085832595825 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306855 synonymous SNV . 0 23 hm5C_associated_SNPs_8812 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11283 DeepMRMD:1;iRNA_m5C:0.999536712157815 11284 chr10 118306855 118306855 1 + A C rs76246039 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCCTGGTCAGGAATTACGGAAA < 41bp 1 0.289631060713543 1 0.634501397609711 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306855 synonymous SNV . 0 22 hm5C_associated_SNPs_8813 0 0 0 0 1 unknown 1 0.500231643921087 0.730997204780578 0.999536712157826 hm5C_site_11284 DeepMRMD:0.730997204780578;iRNA_m5C:0.999536712157826 11285 chr10 118313336 118313336 1 + T C rs78536862 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACCACTGGACGCATCACAGGTT < 41bp 1 0.261520144373342 1 0.0713744163513184 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313336 nonsynonymous SNV 0.013 2 24 hm5C_associated_SNPs_8814 0 0 0 0 2 unknown 1 0.500231415607182 1 0.999537168785636 hm5C_site_11285 DeepMRMD:1;iRNA_m5C:0.999537168785636 11286 chr10 118314919 118314919 1 + C T rs112464025 118314913 + 118314893 118314933 41 ATTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGA ATTTCAGGGTTTGGAATGAGCCAAGTTGTGGGCCACCTAGA < 41bp 1 0.399885993206746 1 0.180562049150467 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314913 chr10:118314919 synonymous SNV . 0 27 hm5C_associated_SNPs_8816 0 0 0 0 0 unknown 1 0.50023164392114 1 0.999536712157719 hm5C_site_11286 DeepMRMD:1;iRNA_m5C:0.999536712157719 11287 chr10 118314919 118314919 1 + C T rs112464025 118314914 + 118314894 118314934 41 TTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGAT TTTCAGGGTTTGGAATGAGCCAAGTTGTGGGCCACCTAGAT < 41bp 1 0.620902292447949 1 0.417880833148956 experiment 0.758195415104101 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314914 chr10:118314919 synonymous SNV . 0 26 hm5C_associated_SNPs_8817 0 0 0 0 0 unknown 1 0.5002316439211 1 0.999536712157799 hm5C_site_11287 DeepMRMD:1;iRNA_m5C:0.999536712157799 11288 chr10 118314919 118314919 1 + C T rs112464025 118314925 + 118314905 118314945 41 GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCCAAA GGAATGAGCCAAGTTGTGGGCCACCTAGATTTCTTTCCAAA < 41bp 1 0.104270900164049 1 0.0365117788314819 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314925 chr10:118314919 synonymous SNV . 0 15 hm5C_associated_SNPs_8818 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11288 DeepMRMD:1;iRNA_m5C:0.999536712157815 11289 chr10 118318719 118318719 1 + T C rs78085802 118318713 + 118318693 118318733 41 GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCTGG GGCTGCCCACAGATGGGTCACTATGCCGATAGATATCCTGG < 41bp 1 0.257752749214041 1 0.055755078792572 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318713 chr10:118318719 synonymous SNV . 0 27 hm5C_associated_SNPs_8819 0 0 0 0 2 unknown 1 0.500231643924856 1 0.999536712150288 hm5C_site_11289 DeepMRMD:1;iRNA_m5C:0.999536712150288 11290 chr10 118318719 118318719 1 + T C rs78085802 118318718 + 118318698 118318738 41 CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAA CCCACAGATGGGTCACTATGCCGATAGATATCCTGGGAAAA < 41bp 1 0.281633450444437 1 0.297964453697205 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318718 chr10:118318719 synonymous SNV . 0 22 hm5C_associated_SNPs_8820 0 0 0 0 2 unknown 1 0.500231643921931 1 0.999536712156137 hm5C_site_11290 DeepMRMD:1;iRNA_m5C:0.999536712156137 11291 chr10 118318719 118318719 1 + T C rs78085802 118318729 + 118318709 118318749 41 GTCACTATGCTGATAGATATCCTGGGAAAACAAATGATGTG GTCACTATGCCGATAGATATCCTGGGAAAACAAATGATGTG < 41bp 1 0.571519394467631 1 0.476272165775299 experiment 0.856961211064738 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318729 chr10:118318719 synonymous SNV . 0 11 hm5C_associated_SNPs_8821 0 0 0 0 2 unknown 1 0.500232848467933 1 0.999534303064133 hm5C_site_11291 DeepMRMD:1;iRNA_m5C:0.999534303064133 11292 chr10 124221227 124221227 1 + C T rs369149111 124221221 + 124221201 124221241 41 GCTGCTGCTGCTGCTGGCGGCGCCCGCCTCGGCGCAGCTGT GCTGCTGCTGCTGCTGGCGGCGCCCGTCTCGGCGCAGCTGT < 41bp 1 0.5421304946063 1 0.712029993534088 experiment 0.915739010787401 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124221221 chr10:124221227 nonsynonymous SNV 0.013 0 27 hm5C_associated_SNPs_8822 1 0 0 0 0 Ribosome 1 0.500231900052993 0.575940012931824 0.999536199894014 hm5C_site_11292 DeepMRMD:0.575940012931824;iRNA_m5C:0.999536199894014 Macular degeneration Macular degeneration 11293 chr10 126150523 126150523 1 + C A rs75426652 126150526 + 126150506 126150546 41 CGGCGCGGGCGGCGGCACGGCCATCGCCGGCTCGGTGGAGG CGGCGCGGGCGGCGGCAAGGCCATCGCCGGCTCGGTGGAGG < 41bp 1 0.147892664755856 1 0.36604979634285 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126150526 chr10:126150523 nonsynonymous SNV 0.000 0 18 hm5C_associated_SNPs_8824 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_11293 DeepMRMD:1;iRNA_m5C:0.999536712157816 11294 chr10 126150523 126150523 1 + C A rs75426652 126150527 + 126150507 126150547 41 GGCGCGGGCGGCGGCACGGCCATCGCCGGCTCGGTGGAGGC GGCGCGGGCGGCGGCAAGGCCATCGCCGGCTCGGTGGAGGC < 41bp 1 0.617817255690165 1 0.427058607339859 experiment 0.764365488619671 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126150527 chr10:126150523 nonsynonymous SNV 0.000 0 17 hm5C_associated_SNPs_8825 0 0 1 0 1 Ribosome 1 0.500233185466658 1 0.999533629066685 hm5C_site_11294 DeepMRMD:1;iRNA_m5C:0.999533629066685 11295 chr10 126205767 126205767 1 + G A rs140823928 126205754 + 126205734 126205774 41 TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATCGT TCACTGCCGTGACAGGCCGTCATGATTGGGGACAATATCGT < 41bp 1 0.490417833731059 1 0.176203012466431 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126205754 chr10:126205767 nonsynonymous SNV 0.995 4 34 hm5C_associated_SNPs_8828 0 0 0 0 2 Ribosome 1 0.50023164392076 1 0.99953671215848 hm5C_site_11295 DeepMRMD:1;iRNA_m5C:0.99953671215848 11296 chr10 127452102 127452102 1 + A T rs373516756 127452092 + 127452072 127452112 41 CAGTGCCTTCAACACGGAGCCGGTTTGTTCATTCGGTGCTT CAGTGCCTTCAACACGGAGCCGGTTTGTTCTTTCGGTGCTT < 41bp 1 0.283955868598976 1 0.500021815299988 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EDRF1 ENSG00000107938 UTR3 Human protein_coding chr10:127452092 chr10:127452102 . . 0 31 hm5C_associated_SNPs_8829 0 0 1 0 0 Cytosol 1 0.500231464773024 0.999956369400024 0.999537070453951 hm5C_site_11296 DeepMRMD:0.999956369400024;iRNA_m5C:0.999537070453951 11297 chr10 127512113 127512113 1 + G C rs114099940 127512131 + 127512111 127512151 41 CAGTGTGAGCGGCAACATGGCGTCCAGGTCTAAGCGGCGTG CACTGTGAGCGGCAACATGGCGTCCAGGTCTAAGCGGCGTG < 41bp 1 0.359291841038555 1 0.159574866294861 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCCIP ENSG00000107949;ENSG00000188690 upstream Human other chr10:127512131 chr10:127512113 . . 0 3 hm5C_associated_SNPs_8830 0 0 0 0 0 Ribosome 1 0.500231643921044 1 0.999536712157912 hm5C_site_11297 DeepMRMD:1;iRNA_m5C:0.999536712157912 11298 chr10 129141927 129141927 1 + T C rs34034225 129141910 + 129141890 129141930 41 TCCTCCTTTTTGGTTTTCAGCTGTGGAACAACTACTTTCAC TCCTCCTTTTTGGTTTTCAGCTGTGGAACAACTACTTCCAC < 41bp 1 0.128482407484147 1 0.35990247130394 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141910 chr10:129141927 synonymous SNV . 0 38 hm5C_associated_SNPs_8831 0 0 1 0 2 Nucleus 1 0.500231643921096 1 0.999536712157809 hm5C_site_11298 DeepMRMD:1;iRNA_m5C:0.999536712157809 11299 chr10 129141927 129141927 1 + T C rs34034225 129141918 + 129141898 129141938 41 TTTGGTTTTCAGCTGTGGAACAACTACTTTCACCTGGCTGT TTTGGTTTTCAGCTGTGGAACAACTACTTCCACCTGGCTGT < 41bp 1 0.137361089441621 1 0.120416313409805 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141918 chr10:129141927 synonymous SNV . 0 30 hm5C_associated_SNPs_8832 0 0 1 0 2 Nucleus 1 0.500231643930084 1 0.999536712139832 hm5C_site_11299 DeepMRMD:1;iRNA_m5C:0.999536712139832 11300 chr10 129141927 129141927 1 + T C rs34034225 129141921 + 129141901 129141941 41 GGTTTTCAGCTGTGGAACAACTACTTTCACCTGGCTGTTGC GGTTTTCAGCTGTGGAACAACTACTTCCACCTGGCTGTTGC < 41bp 1 0.241181129408153 1 0.0962528884410858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141921 chr10:129141927 synonymous SNV . 0 27 hm5C_associated_SNPs_8833 0 0 1 0 2 Nucleus 1 0.500231643921048 1 0.999536712157903 hm5C_site_11300 DeepMRMD:1;iRNA_m5C:0.999536712157903 11301 chr10 129141927 129141927 1 + T C rs34034225 129141924 + 129141904 129141944 41 TTTCAGCTGTGGAACAACTACTTTCACCTGGCTGTTGCTTT TTTCAGCTGTGGAACAACTACTTCCACCTGGCTGTTGCTTT < 41bp 1 0.0545219399403995 1 0.0779949128627777 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141924 chr10:129141927 synonymous SNV . 0 24 hm5C_associated_SNPs_8834 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11301 DeepMRMD:1;iRNA_m5C:0.999536712157815 11302 chr10 129141927 129141927 1 + T C rs34034225 129141930 + 129141910 129141950 41 CTGTGGAACAACTACTTTCACCTGGCTGTTGCTTTCCTTAC CTGTGGAACAACTACTTCCACCTGGCTGTTGCTTTCCTTAC < 41bp 1 0.115162130734823 1 0.282436043024063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141930 chr10:129141927 synonymous SNV . 0 18 hm5C_associated_SNPs_8835 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11302 DeepMRMD:1;iRNA_m5C:0.999536712157815 11303 chr10 129141927 129141927 1 + T C rs34034225 129141931 + 129141911 129141951 41 TGTGGAACAACTACTTTCACCTGGCTGTTGCTTTCCTTACT TGTGGAACAACTACTTCCACCTGGCTGTTGCTTTCCTTACT < 41bp 1 0.200605790767293 1 0.445858418941498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141931 chr10:129141927 synonymous SNV . 0 17 hm5C_associated_SNPs_8836 0 0 1 0 2 Nucleus 1 0.500231628828004 1 0.999536742343993 hm5C_site_11303 DeepMRMD:1;iRNA_m5C:0.999536742343993 11304 chr10 129141927 129141927 1 + T C rs34034225 129141935 + 129141915 129141955 41 GAACAACTACTTTCACCTGGCTGTTGCTTTCCTTACTCAAG GAACAACTACTTCCACCTGGCTGTTGCTTTCCTTACTCAAG < 41bp 1 0.0478910148226908 1 0.086941123008728 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141935 chr10:129141927 synonymous SNV . 0 13 hm5C_associated_SNPs_8837 0 0 1 0 2 Nucleus 1 0.500231686398376 1 0.999536627203248 hm5C_site_11304 DeepMRMD:1;iRNA_m5C:0.999536627203248 11305 chr10 129141927 129141927 1 + T C rs34034225 129141941 + 129141921 129141961 41 CTACTTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCC CTACTTCCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCC < 41bp 1 0.0121376142114085 1 0.0784865915775299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141941 chr10:129141927 synonymous SNV . 0 7 hm5C_associated_SNPs_8838 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11305 DeepMRMD:1;iRNA_m5C:0.999536712157815 11306 chr10 129141927 129141927 1 + T C rs34034225 129141945 + 129141925 129141965 41 TTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCA TTCCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCA < 41bp 1 0.0777435457714636 1 0.0390929579734802 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141945 chr10:129141927 synonymous SNV . 0 3 hm5C_associated_SNPs_8839 0 0 1 0 2 Nucleus 1 0.500231643933545 1 0.99953671213291 hm5C_site_11306 DeepMRMD:1;iRNA_m5C:0.99953671213291 11307 chr10 129141927 129141927 1 + T C rs34034225 129141946 + 129141926 129141966 41 TTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAA TCCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAA < 41bp 1 0.0761886181281068 1 0.0710353255271912 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141946 chr10:129141927 synonymous SNV . 0 2 hm5C_associated_SNPs_8840 0 0 1 0 2 Nucleus 1 0.500231643199353 1 0.999536713601294 hm5C_site_11307 DeepMRMD:1;iRNA_m5C:0.999536713601294 11308 chr10 131978449 131978449 1 + G A rs186745175 131978465 + 131978445 131978485 41 TCTCGGGGCCAAGCGATCCTCCTGCCTCAGCCTTCTGAGTA TCTCAGGGCCAAGCGATCCTCCTGCCTCAGCCTTCTGAGTA < 41bp 1 0.339001199476404 1 0.0791118741035461 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLRX3 ENSG00000108010 UTR3 Human protein_coding chr10:131978465 chr10:131978449 . . 0 5 hm5C_associated_SNPs_8841 0 0 1 0 1 Cytosol 1 0.500231643920215 1 0.99953671215957 hm5C_site_11308 DeepMRMD:1;iRNA_m5C:0.99953671215957 11309 chr10 131978449 131978449 1 + G A rs186745175 131978466 + 131978446 131978486 41 CTCGGGGCCAAGCGATCCTCCTGCCTCAGCCTTCTGAGTAG CTCAGGGCCAAGCGATCCTCCTGCCTCAGCCTTCTGAGTAG < 41bp 1 0.606233482510177 1 0.143074959516525 experiment 0.787533034979645 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLRX3 ENSG00000108010 UTR3 Human protein_coding chr10:131978466 chr10:131978449 . . 0 4 hm5C_associated_SNPs_8842 0 0 1 0 1 Cytosol 1 0.500231643921114 1 0.999536712157772 hm5C_site_11309 DeepMRMD:1;iRNA_m5C:0.999536712157772 11310 chr10 131978449 131978449 1 + G A rs186745175 131978469 + 131978449 131978489 41 GGGGCCAAGCGATCCTCCTGCCTCAGCCTTCTGAGTAGCTG AGGGCCAAGCGATCCTCCTGCCTCAGCCTTCTGAGTAGCTG < 41bp 1 0.311011768020611 1 0.0689663589000702 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLRX3 ENSG00000108010 UTR3 Human protein_coding chr10:131978469 chr10:131978449 . . 0 1 hm5C_associated_SNPs_8843 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_11310 DeepMRMD:1;iRNA_m5C:0.999536712157815 11311 chr10 134351388 134351388 1 + G C rs542636664 134351397 + 134351377 134351417 41 GGCGAGCGACGGGCGCGGGGCCGCGGAGCAGCGAGCGAGCG GGCGAGCGACGCGCGCGGGGCCGCGGAGCAGCGAGCGAGCG < 41bp 1 0.623022089294756 1 0.38461697101593 experiment 0.753955821410488 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient INPP5A ENSG00000068383 UTR5 Human protein_coding chr10:134351397 chr10:134351388 . . 0 12 hm5C_associated_SNPs_8844 0 0 1 0 0 Nucleus 1 0.500231643975313 1 0.999536712049374 hm5C_site_11311 DeepMRMD:1;iRNA_m5C:0.999536712049374 11312 chr10 134351406 134351406 1 + A C rs540258601 134351397 + 134351377 134351417 41 GGCGAGCGACGGGCGCGGGGCCGCGGAGCAGCGAGCGAGCG GGCGAGCGACGGGCGCGGGGCCGCGGAGCCGCGAGCGAGCG < 41bp 1 0.636907205710443 1 0.433436930179596 experiment 0.726185588579115 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient INPP5A ENSG00000068383 UTR5 Human protein_coding chr10:134351397 chr10:134351406 . . 0 30 hm5C_associated_SNPs_8845 0 0 1 0 0 Nucleus 1 0.500231037862487 1 0.999537924275026 hm5C_site_11312 DeepMRMD:1;iRNA_m5C:0.999537924275026 11313 chr10 134596918 134596918 1 + G A rs372237942 134596930 + 134596910 134596950 41 TGTTGGTCGTTCTGAGGGGCCTTTGGAAGTGACCGGTCTGG TGTTGGTCATTCTGAGGGGCCTTTGGAAGTGACCGGTCTGG < 41bp 1 0.225128415313337 1 0.0266160666942596 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control INPP5A ENSG00000234531 ncRNA_exonic Human other chr10:134596930 chr10:134596918 . . 0 9 hm5C_associated_SNPs_8846 0 0 1 0 0 Nucleus 1 0.500232904256377 1 0.999534191487246 hm5C_site_11313 DeepMRMD:1;iRNA_m5C:0.999534191487246 11314 chr10 135000055 135000055 1 + C T rs143078253 135000066 + 135000046 135000086 41 TTCACACCCCAGCCAGGGGCCAGCAGAGGCCCCTGCAGACC TTCACACCCTAGCCAGGGGCCAGCAGAGGCCCCTGCAGACC < 41bp 1 0.57183243217298 1 0.698927104473114 experiment 0.85633513565404 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135000066 chr10:135000055 synonymous SNV . 0 10 hm5C_associated_SNPs_8847 0 0 0 0 0 Endoplasmic reticulum 1 0.500231651813751 0.602145791053772 0.999536696372499 hm5C_site_11314 DeepMRMD:0.602145791053772;iRNA_m5C:0.999536696372499 11315 chr10 135122507 135122507 1 + G A rs3008357 135122505 + 135122485 135122525 41 CGGGGCCCGGGGCGGCGGAGCCGCTGCCTGTAGAGCGGGAT CGGGGCCCGGGGCGGCGGAGCCACTGCCTGTAGAGCGGGAT < 41bp 1 0.355523150211584 1 0.443297833204269 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135122505 chr10:135122507 synonymous SNV . 0 23 hm5C_associated_SNPs_8848 0 0 1 0 1 Ribosome 1 0.500231643921108 1 0.999536712157785 hm5C_site_11315 DeepMRMD:1;iRNA_m5C:0.999536712157785 11316 chr10 135209682 135209682 1 + C T rs148997160 135209670 + 135209650 135209690 41 TACCTTAATTTTGCCACATCCCACTTTCAGGCCGCAACCCT TACCTTAATTTTGCCACATCCCACTTTCAGGCTGCAACCCT < 41bp 1 0.0854944091684175 1 0.0433690547943115 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135209670 chr10:135209682 nonsynonymous SNV 0.995 3 33 hm5C_associated_SNPs_8850 0 0 1 0 1 Cytosol 1 0.500231642001419 1 0.999536715997162 hm5C_site_11316 DeepMRMD:1;iRNA_m5C:0.999536715997162 11317 chr10 135209689 135209689 1 + C G rs190130537 135209670 + 135209650 135209690 41 TACCTTAATTTTGCCACATCCCACTTTCAGGCCGCAACCCT TACCTTAATTTTGCCACATCCCACTTTCAGGCCGCAACCGT < 41bp 1 0.0840386890236458 1 0.0513400435447693 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135209670 chr10:135209689 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_8851 0 0 1 0 1 Cytosol 1 0.500231643922659 1 0.999536712154682 hm5C_site_11317 DeepMRMD:1;iRNA_m5C:0.999536712154682 11318 chr10 135233541 135233541 1 + A G rs2255246 135233540 + 135233520 135233560 41 CGTCCCCCAGGTAACGTGAACATTATTCAGCCTAACTATCC CGTCCCCCAGGTAACGTGAACGTTATTCAGCCTAACTATCC < 41bp 1 0.230059690991297 1 0.0145511627197266 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135233540 chr10:135233541 nonsynonymous SNV 0.023 0 22 hm5C_associated_SNPs_8852 0 0 1 0 1 Cytosol 1 0.50023164401804 1 0.999536711963919 hm5C_site_11318 DeepMRMD:1;iRNA_m5C:0.999536711963919 11319 chr11 209390 209390 1 + C T rs377487596 209400 + 209380 209420 41 TGGAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAGCT TGGAGCCGCTTTTCTCCCTGCCCACAGAGACTGGCGGAGCT < 41bp 1 0.0314167830863117 1 0.382596731185913 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MIR6743 ENSG00000177963 CDS Human protein_coding chr11:209400 chr11:209390 nonsynonymous SNV 0.016 1 11 hm5C_associated_SNPs_8853 0 0 1 0 0 unknown 1 0.500231643854425 1 0.999536712291151 hm5C_site_11319 DeepMRMD:1;iRNA_m5C:0.999536712291151 11320 chr11 209390 209390 1 + C T rs377487596 209401 + 209381 209421 41 GGAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAGCTG GGAGCCGCTTTTCTCCCTGCCCACAGAGACTGGCGGAGCTG < 41bp 1 0.195881752930108 1 0.290806472301483 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MIR6743 ENSG00000177963 CDS Human protein_coding chr11:209401 chr11:209390 nonsynonymous SNV 0.016 1 10 hm5C_associated_SNPs_8854 0 0 1 0 0 unknown 1 0.500231643923911 1 0.999536712152178 hm5C_site_11320 DeepMRMD:1;iRNA_m5C:0.999536712152178 11321 chr11 209390 209390 1 + C T rs377487596 209402 + 209382 209422 41 GAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAGCTGC GAGCCGCTTTTCTCCCTGCCCACAGAGACTGGCGGAGCTGC < 41bp 1 0.303405899979129 1 0.523231625556946 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MIR6743 ENSG00000177963 CDS Human protein_coding chr11:209402 chr11:209390 nonsynonymous SNV 0.016 1 9 hm5C_associated_SNPs_8855 0 0 1 0 0 unknown 1 0.500231643910697 0.953536748886108 0.999536712178606 hm5C_site_11321 DeepMRMD:0.953536748886108;iRNA_m5C:0.999536712178606 11322 chr11 289651 289651 1 + C T rs115270978 289652 + 289632 289672 41 GAGCTCCTTTCCTGCGAGGCCCCGTCTAGGAGGGGCCTCAG GAGCTCCTTTCCTGCGAGGTCCCGTCTAGGAGGGGCCTCAG < 41bp 1 0.211371169875289 1 0.825259685516357 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PGGHG ENSG00000142102 UTR5 Human protein_coding chr11:289652 chr11:289651 . . 0 20 hm5C_associated_SNPs_8856 0 0 1 0 0 unknown 1 0.500231643925627 0.349480628967286 0.999536712148746 hm5C_site_11322 DeepMRMD:0.349480628967286;iRNA_m5C:0.999536712148746 11323 chr11 289651 289651 1 + C T rs115270978 289653 + 289633 289673 41 AGCTCCTTTCCTGCGAGGCCCCGTCTAGGAGGGGCCTCAGG AGCTCCTTTCCTGCGAGGTCCCGTCTAGGAGGGGCCTCAGG < 41bp 1 0.0236746808074207 1 0.279941618442535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PGGHG ENSG00000142102 UTR5 Human protein_coding chr11:289653 chr11:289651 . . 0 19 hm5C_associated_SNPs_8857 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11323 DeepMRMD:1;iRNA_m5C:0.999536712157815 11324 chr11 289651 289651 1 + C T rs115270978 289654 + 289634 289674 41 GCTCCTTTCCTGCGAGGCCCCGTCTAGGAGGGGCCTCAGGA GCTCCTTTCCTGCGAGGTCCCGTCTAGGAGGGGCCTCAGGA < 41bp 1 0.138556875513645 1 0.43521773815155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PGGHG ENSG00000142102 UTR5 Human protein_coding chr11:289654 chr11:289651 . . 0 18 hm5C_associated_SNPs_8858 0 0 1 0 0 unknown 1 0.500231643912008 1 0.999536712175985 hm5C_site_11324 DeepMRMD:1;iRNA_m5C:0.999536712175985 11325 chr11 289651 289651 1 + C T rs115270978 289667 + 289647 289687 41 GAGGCCCCGTCTAGGAGGGGCCTCAGGAAAATCGGGGCTGC GAGGTCCCGTCTAGGAGGGGCCTCAGGAAAATCGGGGCTGC < 41bp 1 0.0828992162292553 1 0.0444842576980591 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PGGHG ENSG00000142102 UTR5 Human protein_coding chr11:289667 chr11:289651 . . 0 5 hm5C_associated_SNPs_8859 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11325 DeepMRMD:1;iRNA_m5C:0.999536712157815 11326 chr11 289651 289651 1 + C T rs115270978 289668 + 289648 289688 41 AGGCCCCGTCTAGGAGGGGCCTCAGGAAAATCGGGGCTGCC AGGTCCCGTCTAGGAGGGGCCTCAGGAAAATCGGGGCTGCC < 41bp 1 0.204299356741949 1 0.122030943632126 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PGGHG ENSG00000142102 UTR5 Human protein_coding chr11:289668 chr11:289651 . . 0 4 hm5C_associated_SNPs_8860 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11326 DeepMRMD:1;iRNA_m5C:0.999536712157815 11327 chr11 289668 289668 1 + C G rs112058263 289651 + 289631 289671 41 CGAGCTCCTTTCCTGCGAGGCCCCGTCTAGGAGGGGCCTCA CGAGCTCCTTTCCTGCGAGGCCCCGTCTAGGAGGGGCGTCA < 41bp 1 0.0760710590213166 1 0.0518392622470856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PGGHG ENSG00000142102 UTR5 Human protein_coding chr11:289651 chr11:289668 . . 0 38 hm5C_associated_SNPs_8861 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11327 DeepMRMD:1;iRNA_m5C:0.999536712157815 11328 chr11 289668 289668 1 + C G rs112058263 289652 + 289632 289672 41 GAGCTCCTTTCCTGCGAGGCCCCGTCTAGGAGGGGCCTCAG GAGCTCCTTTCCTGCGAGGCCCCGTCTAGGAGGGGCGTCAG < 41bp 1 0.165391965589765 1 0.352722883224487 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PGGHG ENSG00000142102 UTR5 Human protein_coding chr11:289652 chr11:289668 . . 0 37 hm5C_associated_SNPs_8862 0 0 1 0 0 unknown 1 0.500231643918705 1 0.999536712162591 hm5C_site_11328 DeepMRMD:1;iRNA_m5C:0.999536712162591 11329 chr11 289668 289668 1 + C G rs112058263 289653 + 289633 289673 41 AGCTCCTTTCCTGCGAGGCCCCGTCTAGGAGGGGCCTCAGG AGCTCCTTTCCTGCGAGGCCCCGTCTAGGAGGGGCGTCAGG < 41bp 1 0.0216455213661843 1 0.166206777095795 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PGGHG ENSG00000142102 UTR5 Human protein_coding chr11:289653 chr11:289668 . . 0 36 hm5C_associated_SNPs_8863 0 0 1 0 0 unknown 1 0.500231643921087 1 0.999536712157826 hm5C_site_11329 DeepMRMD:1;iRNA_m5C:0.999536712157826 11330 chr11 289668 289668 1 + C G rs112058263 289654 + 289634 289674 41 GCTCCTTTCCTGCGAGGCCCCGTCTAGGAGGGGCCTCAGGA GCTCCTTTCCTGCGAGGCCCCGTCTAGGAGGGGCGTCAGGA < 41bp 1 0.0908591458721651 1 0.10346594452858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PGGHG ENSG00000142102 UTR5 Human protein_coding chr11:289654 chr11:289668 . . 0 35 hm5C_associated_SNPs_8864 0 0 1 0 0 unknown 1 0.500231643893648 1 0.999536712212703 hm5C_site_11330 DeepMRMD:1;iRNA_m5C:0.999536712212703 11331 chr11 289668 289668 1 + C G rs112058263 289667 + 289647 289687 41 GAGGCCCCGTCTAGGAGGGGCCTCAGGAAAATCGGGGCTGC GAGGCCCCGTCTAGGAGGGGCGTCAGGAAAATCGGGGCTGC < 41bp 1 0.26855837196178 1 0.134620845317841 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PGGHG ENSG00000142102 UTR5 Human protein_coding chr11:289667 chr11:289668 . . 0 22 hm5C_associated_SNPs_8865 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11331 DeepMRMD:1;iRNA_m5C:0.999536712157815 11332 chr11 295038 295038 1 + C T rs542611677 295031 + 295011 295051 41 CACGACCCCACCCCGAGCTCCTGAAGCCGGGGTCTGAGCCT CACGACCCCACCCCGAGCTCCTGAAGCTGGGGTCTGAGCCT < 41bp 1 0.617096793389062 1 0.636037826538086 experiment 0.765806413221876 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PGGHG ENSG00000142102 UTR3 Human protein_coding chr11:295031 chr11:295038 . . 0 28 hm5C_associated_SNPs_8866 0 0 1 0 0 unknown 1 0.500232623019445 0.727924346923828 0.99953475396111 hm5C_site_11332 DeepMRMD:0.727924346923828;iRNA_m5C:0.99953475396111 11333 chr11 309127 309127 1 + A C rs1059091 309126 + 309106 309146 41 ATCTTCATGACCATTCTGCTCATCATCATCCCAGTGTTGGT ATCTTCATGACCATTCTGCTCCTCATCATCCCAGTGTTGGT < 41bp 1 0.211277396228552 1 0.0205833613872528 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFITM2 ENSG00000185201 CDS Human protein_coding chr11:309126 chr11:309127 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_8867 0 1 1 0 0 Endoplasmic reticulum 1 0.500231673427399 1 0.999536653145203 hm5C_site_11333 DeepMRMD:1;iRNA_m5C:0.999536653145203 11334 chr11 403980 403980 1 + G A rs11748 403978 + 403958 403998 41 GCCACCTGATCGAGAAGCTGCCGGGCAGCGTGGGTGAGAAG GCCACCTGATCGAGAAGCTGCCAGGCAGCGTGGGTGAGAAG < 41bp 1 0.181740937299285 1 0.0707011520862579 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKP3 ENSG00000184363 CDS Human protein_coding chr11:403978 chr11:403980 synonymous SNV . 0 23 hm5C_associated_SNPs_8870 0 0 1 0 1 Ribosome 1 0.500231642543639 1 0.999536714912722 hm5C_site_11334 DeepMRMD:1;iRNA_m5C:0.999536714912722 11335 chr11 403980 403980 1 + G A rs11748 403979 + 403959 403999 41 CCACCTGATCGAGAAGCTGCCGGGCAGCGTGGGTGAGAAGT CCACCTGATCGAGAAGCTGCCAGGCAGCGTGGGTGAGAAGT < 41bp 1 0.298692348536355 1 0.2673559486866 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKP3 ENSG00000184363 CDS Human protein_coding chr11:403979 chr11:403980 synonymous SNV . 0 22 hm5C_associated_SNPs_8871 0 0 1 0 1 Ribosome 1 0.500231615727039 1 0.999536768545922 hm5C_site_11335 DeepMRMD:1;iRNA_m5C:0.999536768545922 11336 chr11 450319 450319 1 + C A rs143028950 450335 + 450315 450355 41 GCTGCTCTCCTAAGACCCCGCGGGCCAGCGCCGCGACCCCT GCTGATCTCCTAAGACCCCGCGGGCCAGCGCCGCGACCCCT < 41bp 1 0.61846360642711 1 0.906279325485229 experiment 0.763072787145781 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTDSS2 ENSG00000174915 UTR5 Human protein_coding chr11:450335 chr11:450319 . . 0 5 hm5C_associated_SNPs_8872 0 0 1 0 0 Ribosome 1 0.500231643707315 0.187441349029542 0.99953671258537 hm5C_site_11336 DeepMRMD:0.187441349029542;iRNA_m5C:0.99953671258537 11337 chr11 490525 490525 1 + C G rs151055800 490505 + 490485 490525 41 GCACCGTCGGCAACGGGGACCAGCACCCACTGGGGCTGGAC GCACCGTCGGCAACGGGGACCAGCACCCACTGGGGCTGGAG < 41bp 1 0.557473549966753 1 0.797078609466553 experiment 0.885052900066495 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:490505 chr11:490525 nonsynonymous SNV 0.051 0 41 hm5C_associated_SNPs_8873 0 0 1 0 0 Ribosome 1 0.500231643914119 0.405842781066894 0.999536712171762 hm5C_site_11337 DeepMRMD:0.405842781066894;iRNA_m5C:0.999536712171762 11338 chr11 490812 490812 1 + G A rs373827519 490821 + 490801 490841 41 CGTGTGTACGCGCGTGTGTACACATGCGTGGCCGCCTGTGG CGTGTGTACGCACGTGTGTACACATGCGTGGCCGCCTGTGG < 41bp 1 0.515507971777271 1 0.156153589487076 experiment 0.968984056445459 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTDSS2 ENSG00000174915 UTR3 Human protein_coding chr11:490821 chr11:490812 . . 0 12 hm5C_associated_SNPs_8874 0 0 1 0 0 Ribosome 1 0.500231643898808 1 0.999536712202384 hm5C_site_11338 DeepMRMD:1;iRNA_m5C:0.999536712202384 11339 chr11 490812 490812 1 + G A rs373827519 490823 + 490803 490843 41 TGTGTACGCGCGTGTGTACACATGCGTGGCCGCCTGTGGTG TGTGTACGCACGTGTGTACACATGCGTGGCCGCCTGTGGTG < 41bp 1 0.643833574338879 1 0.054560661315918 experiment 0.712332851322241 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTDSS2 ENSG00000174915 UTR3 Human protein_coding chr11:490823 chr11:490812 . . 0 10 hm5C_associated_SNPs_8875 0 0 1 0 0 Ribosome 1 0.50023164292683 1 0.99953671414634 hm5C_site_11339 DeepMRMD:1;iRNA_m5C:0.99953671414634 11340 chr11 558318 558318 1 + G A rs569767691 558317 + 558297 558337 41 TCCTAATGTCAGGTCAGTGGCGAAGGAGGGGAGAAGGAGGG TCCTAATGTCAGGTCAGTGGCAAAGGAGGGGAGAAGGAGGG < 41bp 1 0.612550572188863 1 0.488541334867477 experiment 0.774898855622274 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control LMNTD2 ENSG00000254815 ncRNA_exonic Human antisense chr11:558317 chr11:558318 . . 0 22 hm5C_associated_SNPs_8878 0 0 1 0 0 chromatin 1 0.500231643921082 1 0.999536712157835 hm5C_site_11340 DeepMRMD:1;iRNA_m5C:0.999536712157835 11341 chr11 561014 561014 1 + C G rs544432445 561027 + 561007 561047 41 CGGGTCTCCAGGCTGGCGAGCGCCCAGGTGAGCCGCGCCGG CGGGTCTGCAGGCTGGCGAGCGCCCAGGTGAGCCGCGCCGG < 41bp 1 0.60362035890923 1 0.158464223146439 experiment 0.792759282181541 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RASSF7 ENSG00000099849 UTR5 Human protein_coding chr11:561027 chr11:561014 . . 0 8 hm5C_associated_SNPs_8879 0 0 1 0 1 exosome 1 0.500231618611252 1 0.999536762777495 hm5C_site_11341 DeepMRMD:1;iRNA_m5C:0.999536762777495 11342 chr11 561026 561026 1 + G A rs183456713 561027 + 561007 561047 41 CGGGTCTCCAGGCTGGCGAGCGCCCAGGTGAGCCGCGCCGG CGGGTCTCCAGGCTGGCGAACGCCCAGGTGAGCCGCGCCGG < 41bp 1 0.570315633585974 1 0.237150758504868 experiment 0.859368732828053 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RASSF7 ENSG00000099849 UTR5 Human protein_coding chr11:561027 chr11:561026 . . 0 20 hm5C_associated_SNPs_8880 0 0 1 0 1 exosome 1 0.500231643829731 1 0.999536712340537 hm5C_site_11342 DeepMRMD:1;iRNA_m5C:0.999536712340537 11343 chr11 576492 576492 1 + A C rs543756289 576491 + 576471 576511 41 CACTTCCGGGTCGAAGAGCGCACGGCGGCGGCAGAGGCGGC CACTTCCGGGTCGAAGAGCGCCCGGCGGCGGCAGAGGCGGC < 41bp 1 0.50179726692804 1 0.350881278514862 experiment 0.996405466143919 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 UTR5 Human protein_coding chr11:576491 chr11:576492 . . 0 22 hm5C_associated_SNPs_8881 0 0 0 0 0 Nucleus 1 0.500231643921055 1 0.99953671215789 hm5C_site_11343 DeepMRMD:1;iRNA_m5C:0.99953671215789 11344 chr11 610277 610277 1 + T C rs11246212 610293 + 610273 610313 41 CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC CAGGCGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC < 41bp 1 0.0286705506243678 1 0.0244758725166321 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610293 chr11:610277 nonsynonymous SNV 0.000 0 5 hm5C_associated_SNPs_8882 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11344 DeepMRMD:1;iRNA_m5C:0.999536712157815 11345 chr11 610300 610300 1 + A G rs201244128 610293 + 610273 610313 41 CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC CAGGTGTTCTCCGAGCTGCCCTTTCCCGGTCACGTGCTTCC < 41bp 1 0.029472978544876 1 0.0159706175327301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610293 chr11:610300 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_8883 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11345 DeepMRMD:1;iRNA_m5C:0.999536712157815 11346 chr11 703175 703175 1 + A G rs7107522 703170 + 703150 703190 41 GCTACGGACACCCGGGATACCCCACACTGGGGCCCTCCTCC GCTACGGACACCCGGGATACCCCACGCTGGGGCCCTCCTCC < 41bp 1 0.410538781148259 1 0.285432606935501 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM80 ENSG00000177042 UTR3 Human protein_coding chr11:703170 chr11:703175 . . 0 26 hm5C_associated_SNPs_8884 0 0 0 0 0 Endoplasmic reticulum 1 0.50023164392654 1 0.99953671214692 hm5C_site_11346 DeepMRMD:1;iRNA_m5C:0.99953671214692 11347 chr11 727310 727310 1 + T C rs12285459 727321 + 727301 727341 41 TGGCCCCTGTGATGCTCCCCCATCCCCACCCACTTCTACAT TGGCCCCTGCGATGCTCCCCCATCCCCACCCACTTCTACAT < 41bp 1 0.121503057957657 1 0.352604746818542 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPS8L2 ENSG00000177106 UTR3 Human protein_coding chr11:727321 chr11:727310 . . 0 10 hm5C_associated_SNPs_8885 0 0 1 1 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11347 DeepMRMD:1;iRNA_m5C:0.999536712157815 11348 chr11 727310 727310 1 + T C rs12285459 727326 + 727306 727346 41 CCTGTGATGCTCCCCCATCCCCACCCACTTCTACATCCATC CCTGCGATGCTCCCCCATCCCCACCCACTTCTACATCCATC < 41bp 1 0.151867651608327 1 0.0846614241600037 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPS8L2 ENSG00000177106 UTR3 Human protein_coding chr11:727326 chr11:727310 . . 0 5 hm5C_associated_SNPs_8886 0 0 1 1 0 Cytosol 1 0.500231648423297 1 0.999536703153405 hm5C_site_11348 DeepMRMD:1;iRNA_m5C:0.999536703153405 11349 chr11 727310 727310 1 + T C rs12285459 727329 + 727309 727349 41 GTGATGCTCCCCCATCCCCACCCACTTCTACATCCATCCAC GCGATGCTCCCCCATCCCCACCCACTTCTACATCCATCCAC < 41bp 1 0.133620733535153 1 0.0372576415538788 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPS8L2 ENSG00000177106 UTR3 Human protein_coding chr11:727329 chr11:727310 . . 0 2 hm5C_associated_SNPs_8887 0 0 1 1 0 Cytosol 1 0.500231643574402 1 0.999536712851196 hm5C_site_11349 DeepMRMD:1;iRNA_m5C:0.999536712851196 11350 chr11 764957 764957 1 + T C rs537502977 764950 + 764930 764970 41 TTTACAAATTGGAGCAGGGACAGATCATAGATTTCTGATTT TTTACAAATTGGAGCAGGGACAGATCACAGATTTCTGATTT < 41bp 1 0.449174691430826 1 0.342233538627625 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TALDO1 ENSG00000177156 UTR3 Human protein_coding chr11:764950 chr11:764957 . . 0 28 hm5C_associated_SNPs_8888 0 0 1 3 0 Ribosome 1 0.500231611113749 1 0.999536777772503 hm5C_site_11350 DeepMRMD:1;iRNA_m5C:0.999536777772503 11351 chr11 764957 764957 1 + T C rs537502977 764955 + 764935 764975 41 AAATTGGAGCAGGGACAGATCATAGATTTCTGATTTTATGT AAATTGGAGCAGGGACAGATCACAGATTTCTGATTTTATGT < 41bp 1 0.57116919878005 1 0.138360530138016 experiment 0.8576616024399 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TALDO1 ENSG00000177156 UTR3 Human protein_coding chr11:764955 chr11:764957 . . 0 23 hm5C_associated_SNPs_8889 0 0 1 3 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11351 DeepMRMD:1;iRNA_m5C:0.999536712157815 11352 chr11 810000 810000 1 + C T rs557149339 810012 + 809992 810032 41 GTCGCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACG GTCGCACGTGTGAGACTTCTCCGCCGCCTCCGCCGCAGACG < 41bp 1 0.472187808429113 1 0.262076109647751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810012 chr11:810000 . . 0 9 hm5C_associated_SNPs_8890 0 0 1 0 1 Ribosome 1 0.500231629754175 1 0.99953674049165 hm5C_site_11352 DeepMRMD:1;iRNA_m5C:0.99953674049165 11353 chr11 810000 810000 1 + C T rs557149339 810013 + 809993 810033 41 TCGCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGC TCGCACGTGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGC < 41bp 1 0.689842852310438 1 0.491534322500229 experiment 0.620314295379124 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810013 chr11:810000 . . 0 8 hm5C_associated_SNPs_8891 0 0 1 0 1 Ribosome 1 0.500229631008348 1 0.999540737983303 hm5C_site_11353 DeepMRMD:1;iRNA_m5C:0.999540737983303 11354 chr11 810000 810000 1 + C T rs557149339 810015 + 809995 810035 41 GCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGCCG GCACGTGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGCCG < 41bp 1 0.376603977804364 1 0.112392485141754 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810015 chr11:810000 . . 0 6 hm5C_associated_SNPs_8892 0 0 1 0 1 Ribosome 1 0.500231655205494 1 0.999536689589012 hm5C_site_11354 DeepMRMD:1;iRNA_m5C:0.999536689589012 11355 chr11 810006 810006 1 + A G rs187202824 810012 + 809992 810032 41 GTCGCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACG GTCGCACGCGTGAGGCTTCTCCGCCGCCTCCGCCGCAGACG < 41bp 1 0.483271438480952 1 0.351424396038055 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810012 chr11:810006 . . 0 15 hm5C_associated_SNPs_8893 0 0 1 0 1 Ribosome 1 0.500227205339316 1 0.999545589321367 hm5C_site_11355 DeepMRMD:1;iRNA_m5C:0.999545589321367 11356 chr11 810006 810006 1 + A G rs187202824 810015 + 809995 810035 41 GCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGCCG GCACGCGTGAGGCTTCTCCGCCGCCTCCGCCGCAGACGCCG < 41bp 1 0.414175294285113 1 0.154796749353409 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810015 chr11:810006 . . 0 12 hm5C_associated_SNPs_8895 0 0 1 0 1 Ribosome 1 0.500231644039985 1 0.999536711920031 hm5C_site_11356 DeepMRMD:1;iRNA_m5C:0.999536711920031 11357 chr11 810011 810011 1 + T C rs542687757 810012 + 809992 810032 41 GTCGCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACG GTCGCACGCGTGAGACTTCCCCGCCGCCTCCGCCGCAGACG < 41bp 1 0.457470865762924 1 0.254204213619232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810012 chr11:810011 . . 0 20 hm5C_associated_SNPs_8896 0 0 1 0 1 Ribosome 1 0.500231938575659 1 0.999536122848681 hm5C_site_11357 DeepMRMD:1;iRNA_m5C:0.999536122848681 11358 chr11 810011 810011 1 + T C rs542687757 810013 + 809993 810033 41 TCGCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGC TCGCACGCGTGAGACTTCCCCGCCGCCTCCGCCGCAGACGC < 41bp 1 0.683324407935488 1 0.516140401363373 experiment 0.633351184129023 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810013 chr11:810011 . . 0 19 hm5C_associated_SNPs_8897 0 0 1 0 1 Ribosome 1 0.500302166970291 0.967719197273254 0.999395666059418 hm5C_site_11358 DeepMRMD:0.967719197273254;iRNA_m5C:0.999395666059418 11359 chr11 810011 810011 1 + T C rs542687757 810015 + 809995 810035 41 GCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGCCG GCACGCGTGAGACTTCCCCGCCGCCTCCGCCGCAGACGCCG < 41bp 1 0.343240525234915 1 0.163224846124649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810015 chr11:810011 . . 0 17 hm5C_associated_SNPs_8898 0 0 1 0 1 Ribosome 1 0.500231653614578 1 0.999536692770845 hm5C_site_11359 DeepMRMD:1;iRNA_m5C:0.999536692770845 11360 chr11 810034 810034 1 + C T rs572844964 810015 + 809995 810035 41 GCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGCCG GCACGCGTGAGACTTCTCCGCCGCCTCCGCCGCAGACGCTG < 41bp 1 0.371756642178595 1 0.0986404418945312 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:810015 chr11:810034 . . 0 40 hm5C_associated_SNPs_8899 0 0 1 0 1 Ribosome 1 0.500231649429534 1 0.999536701140931 hm5C_site_11360 DeepMRMD:1;iRNA_m5C:0.999536701140931 11361 chr11 823799 823799 1 + C G rs200088893 823809 + 823789 823829 41 GAGGATTACTCGCAGCTGCCCGGAGAAGATCACATCCTGGA GAGGATTACTGGCAGCTGCCCGGAGAAGATCACATCCTGGA < 41bp 1 0.516471969570342 1 0.504286348819733 experiment 0.967056060859316 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA2 ENSG00000177666 CDS Human protein_coding chr11:823809 chr11:823799 nonsynonymous SNV 0.000 2 11 hm5C_associated_SNPs_8900 0 0 1 0 0 Ribosome 1 0.500231643921088 0.991427302360534 0.999536712157825 hm5C_site_11361 DeepMRMD:0.991427302360534;iRNA_m5C:0.999536712157825 11362 chr11 830662 830662 1 + G A rs556837233 830674 + 830654 830694 41 GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC GAGCTGGAACTGCAGAGCCGCGAGCAGGACCTGGAACGCGC < 41bp 1 0.478901800260259 1 0.448029518127441 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830674 chr11:830662 synonymous SNV . 0 9 hm5C_associated_SNPs_8901 0 0 1 0 2 Cytosol 1 0.500231645107993 1 0.999536709784014 hm5C_site_11362 DeepMRMD:1;iRNA_m5C:0.999536709784014 11363 chr11 830670 830670 1 + G T rs4075289 830674 + 830654 830694 41 GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC GAGCTGGAGCTGCAGATCCGCGAGCAGGACCTGGAACGCGC < 41bp 1 0.621774778616136 1 0.572227716445923 experiment 0.756450442767729 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830674 chr11:830670 nonsynonymous SNV 0.970 0 17 hm5C_associated_SNPs_8902 0 0 1 0 2 Cytosol 1 0.500231818096006 0.855544567108154 0.999536363807989 hm5C_site_11363 DeepMRMD:0.855544567108154;iRNA_m5C:0.999536363807989 11364 chr11 831572 831572 1 + T A rs530911961 831584 + 831564 831604 41 GGGACGCCTGCGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG GGGACGCCAGCGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG < 41bp 1 0.649137314685425 1 0.700644195079803 experiment 0.701725370629149 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831584 chr11:831572 nonsynonymous SNV 0.389 0 9 hm5C_associated_SNPs_8903 0 0 1 0 1 Cytosol 1 0.500231643921092 0.598711609840394 0.999536712157815 hm5C_site_11364 DeepMRMD:0.598711609840394;iRNA_m5C:0.999536712157815 11365 chr11 831682 831682 1 + C T rs35336339 831668 + 831648 831688 41 GCTGCTGTTGCTGGGCTCGGCCCCCCAGACGCGGCTCTGGC GCTGCTGTTGCTGGGCTCGGCCCCCCAGACGCGGTTCTGGC < 41bp 1 0.220521553193666 1 0.227477699518204 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831668 chr11:831682 synonymous SNV . 0 35 hm5C_associated_SNPs_8904 0 0 1 0 0 Cytosol 1 0.500231644148808 1 0.999536711702384 hm5C_site_11365 DeepMRMD:1;iRNA_m5C:0.999536711702384 11366 chr11 831712 831712 1 + A C rs568790072 831711 + 831691 831731 41 CCTTCCCAGTGCCCGGTGACCAGCCCCGAGTGACTCACGGA CCTTCCCAGTGCCCGGTGACCCGCCCCGAGTGACTCACGGA < 41bp 1 0.321791725773276 1 0.163705706596375 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CRACR2B ENSG00000255108 ncRNA_intronic Human antisense chr11:831711 chr11:831712 . . 0 22 hm5C_associated_SNPs_8906 0 0 0 0 0 Cytosol 1 0.500231644781054 1 0.999536710437891 hm5C_site_11366 DeepMRMD:1;iRNA_m5C:0.999536710437891 11367 chr11 831717 831717 1 + C G rs537835845 831711 + 831691 831731 41 CCTTCCCAGTGCCCGGTGACCAGCCCCGAGTGACTCACGGA CCTTCCCAGTGCCCGGTGACCAGCCCGGAGTGACTCACGGA < 41bp 1 0.617044605736457 1 0.1564562022686 experiment 0.765910788527085 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CRACR2B ENSG00000255108 ncRNA_intronic Human antisense chr11:831711 chr11:831717 . . 0 27 hm5C_associated_SNPs_8907 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11367 DeepMRMD:1;iRNA_m5C:0.999536712157815 11368 chr11 838419 838419 1 + A G rs1130678 838416 + 838396 838436 41 GGGGGTGTTTTGTGGGGCTCCCCAGACACACTCTCTGCCTG GGGGGTGTTTTGTGGGGCTCCCCGGACACACTCTCTGCCTG < 41bp 1 0.68311077645413 1 0.774200320243835 experiment 0.63377844709174 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD151 ENSG00000177697 UTR3 Human protein_coding chr11:838416 chr11:838419 . . 0 24 hm5C_associated_SNPs_8908 0 0 1 0 0 Ribosome 1 0.500234133333331 0.45159935951233 0.999531733333338 hm5C_site_11368 DeepMRMD:0.45159935951233;iRNA_m5C:0.999531733333338 11369 chr11 838419 838419 1 + A G rs1130678 838418 + 838398 838438 41 GGGTGTTTTGTGGGGCTCCCCAGACACACTCTCTGCCTGGT GGGTGTTTTGTGGGGCTCCCCGGACACACTCTCTGCCTGGT < 41bp 1 0.551140531299193 1 0.863776624202728 experiment 0.897718937401613 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD151 ENSG00000177697 UTR3 Human protein_coding chr11:838418 chr11:838419 . . 0 22 hm5C_associated_SNPs_8909 0 0 1 0 0 Ribosome 1 0.50023165470886 0.272446751594544 0.999536690582279 hm5C_site_11369 DeepMRMD:0.272446751594544;iRNA_m5C:0.999536690582279 11370 chr11 838424 838424 1 + C T rs1130680 838416 + 838396 838436 41 GGGGGTGTTTTGTGGGGCTCCCCAGACACACTCTCTGCCTG GGGGGTGTTTTGTGGGGCTCCCCAGACATACTCTCTGCCTG < 41bp 1 0.424322265852715 1 0.701601684093475 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD151 ENSG00000177697 UTR3 Human protein_coding chr11:838416 chr11:838424 . . 0 29 hm5C_associated_SNPs_8910 0 0 1 0 0 Ribosome 1 0.500231586429329 0.59679663181305 0.999536827141342 hm5C_site_11370 DeepMRMD:0.59679663181305;iRNA_m5C:0.999536827141342 11371 chr11 838424 838424 1 + C T rs1130680 838418 + 838398 838438 41 GGGTGTTTTGTGGGGCTCCCCAGACACACTCTCTGCCTGGT GGGTGTTTTGTGGGGCTCCCCAGACATACTCTCTGCCTGGT < 41bp 1 0.571503138149182 1 0.802523016929626 experiment 0.856993723701635 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD151 ENSG00000177697 UTR3 Human protein_coding chr11:838418 chr11:838424 . . 0 27 hm5C_associated_SNPs_8912 0 0 1 0 0 Ribosome 1 0.500231643503948 0.394953966140748 0.999536712992105 hm5C_site_11371 DeepMRMD:0.394953966140748;iRNA_m5C:0.999536712992105 11372 chr11 838628 838628 1 + C T rs527852293 838629 + 838609 838649 41 GGCCTCTGCCCCTCCCAACCCAGCCCTCGTCTCCCTCGACA GGCCTCTGCCCCTCCCAACTCAGCCCTCGTCTCCCTCGACA < 41bp 1 0.627007842089392 1 0.771103382110596 experiment 0.745984315821216 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD151 ENSG00000177697 UTR3 Human protein_coding chr11:838629 chr11:838628 . . 0 20 hm5C_associated_SNPs_8913 0 0 1 0 0 Ribosome 1 0.500231643921092 0.457793235778808 0.999536712157815 hm5C_site_11372 DeepMRMD:0.457793235778808;iRNA_m5C:0.999536712157815 11373 chr11 838634 838634 1 + C A rs8672 838629 + 838609 838649 41 GGCCTCTGCCCCTCCCAACCCAGCCCTCGTCTCCCTCGACA GGCCTCTGCCCCTCCCAACCCAGCCATCGTCTCCCTCGACA < 41bp 1 0.600861289622429 1 0.232728004455566 experiment 0.798277420755141 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD151 ENSG00000177697 UTR3 Human protein_coding chr11:838629 chr11:838634 . . 0 26 hm5C_associated_SNPs_8914 0 0 1 0 0 Ribosome 1 0.500230252205836 1 0.999539495588329 hm5C_site_11373 DeepMRMD:1;iRNA_m5C:0.999539495588329 11374 chr11 985547 985547 1 + C G rs10794358 985545 + 985525 985565 41 CCAACGCGAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA CCAACGCGAAGAATGCCGTGCTGTTCGAGGCCATCAGCTTA < 41bp 1 0.0684221975403321 1 0.0596843659877777 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985545 chr11:985547 synonymous SNV . 0 23 hm5C_associated_SNPs_8915 0 0 1 0 1 Nucleus 1 0.500231643754281 1 0.999536712491438 hm5C_site_11374 DeepMRMD:1;iRNA_m5C:0.999536712491438 11375 chr11 1254385 1254385 1 + G A rs531579962 1254403 + 1254383 1254423 41 GCGGGCACCTTCCTCAATGACGCGGGCGCCTGTGTGCCCGC GCAGGCACCTTCCTCAATGACGCGGGCGCCTGTGTGCCCGC < 41bp 1 0.563124441149507 1 0.904432773590088 experiment 0.873751117700986 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout MUC5B ENSG00000117983 CDS Human protein_coding chr11:1254403 chr11:1254385 synonymous SNV . 0 3 hm5C_associated_SNPs_8916 0 0 0 0 0 Endoplasmic reticulum 1 0.500229323198385 0.191134452819824 0.99954135360323 hm5C_site_11375 DeepMRMD:0.191134452819824;iRNA_m5C:0.99954135360323 11376 chr11 2797237 2797237 1 + G A rs1057128 2797253 + 2797233 2797273 41 ACTCGCAGGGCCACCTCAACCTCATGGTGCGCATCAAGGAG ACTCACAGGGCCACCTCAACCTCATGGTGCGCATCAAGGAG < 41bp 1 0.483747084307007 1 0.389591157436371 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2797253 chr11:2797237 synonymous SNV . 0 5 hm5C_associated_SNPs_8918 7 0 0 0 2 Nucleus 1 0.500220899540881 1 0.999558200918239 hm5C_site_11376 DeepMRMD:1;iRNA_m5C:0.999558200918239 not specified not specified 11377 chr11 2869452 2869452 1 + G A rs45477500 2869450 + 2869430 2869470 41 CCGGTGTGGGGGCCCCGTCTCAGGTCTGAGTTGTTACCCCA CCGGTGTGGGGGCCCCGTCTCAAGTCTGAGTTGTTACCCCA < 41bp 1 0.535407161228916 1 0.908917307853699 experiment 0.929185677542168 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KCNQ1-AS1 ENSG00000229414 ncRNA_intronic Human antisense chr11:2869450 chr11:2869452 . . 0 23 hm5C_associated_SNPs_8919 5 0 0 0 0 unknown 1 0.500231643921089 0.182165384292602 0.999536712157822 hm5C_site_11377 DeepMRMD:0.182165384292602;iRNA_m5C:0.999536712157822 Long QT syndrome Long QT syndrome 11378 chr11 3418827 3418827 1 + G A rs61877996 3418837 + 3418817 3418857 41 TTGAGAATGGGCCATGATGACAATGGCGGTTTTGTGGAATA TTGAGAATGGACCATGATGACAATGGCGGTTTTGTGGAATA < 41bp 1 0.175581145406548 1 0.219303220510483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3418837 chr11:3418827 . . 0 11 hm5C_associated_SNPs_8920 0 0 0 0 0 unknown 1 0.500231408853128 1 0.999537182293745 hm5C_site_11378 DeepMRMD:1;iRNA_m5C:0.999537182293745 11379 chr11 3418829 3418829 1 + C A rs531452531 3418837 + 3418817 3418857 41 TTGAGAATGGGCCATGATGACAATGGCGGTTTTGTGGAATA TTGAGAATGGGCAATGATGACAATGGCGGTTTTGTGGAATA < 41bp 1 0.166785704187981 1 0.221693933010101 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3418837 chr11:3418829 . . 0 13 hm5C_associated_SNPs_8921 0 0 0 0 0 unknown 1 0.500231500651222 1 0.999536998697555 hm5C_site_11379 DeepMRMD:1;iRNA_m5C:0.999536998697555 11380 chr11 3418843 3418843 1 + C T rs61877997 3418837 + 3418817 3418857 41 TTGAGAATGGGCCATGATGACAATGGCGGTTTTGTGGAATA TTGAGAATGGGCCATGATGACAATGGTGGTTTTGTGGAATA < 41bp 1 0.224966263867719 1 0.136869102716446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3418837 chr11:3418843 . . 0 27 hm5C_associated_SNPs_8922 0 0 0 0 0 unknown 1 0.50023164383188 1 0.99953671233624 hm5C_site_11380 DeepMRMD:1;iRNA_m5C:0.99953671233624 11381 chr11 3418844 3418844 1 + G A rs568170382 3418837 + 3418817 3418857 41 TTGAGAATGGGCCATGATGACAATGGCGGTTTTGTGGAATA TTGAGAATGGGCCATGATGACAATGGCAGTTTTGTGGAATA < 41bp 1 0.178009455525035 1 0.301773458719254 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3418837 chr11:3418844 . . 0 28 hm5C_associated_SNPs_8923 0 0 0 0 0 unknown 1 0.500231643916603 1 0.999536712166794 hm5C_site_11381 DeepMRMD:1;iRNA_m5C:0.999536712166794 11382 chr11 3846724 3846724 1 + G A rs373030868 3846713 + 3846693 3846733 41 TTCAGTCCTGCTTGGGAGGACGCAGCCCACTGCCCAGAAAC TTCAGTCCTGCTTGGGAGGACGCAGCCCACTACCCAGAAAC < 41bp 1 0.499104555230278 1 0.558198094367981 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PGAP2 ENSG00000148985 UTR3 Human protein_coding chr11:3846713 chr11:3846724 . . 0 32 hm5C_associated_SNPs_8924 0 0 1 0 0 Ribosome 1 0.500231643921126 0.883603811264038 0.999536712157747 hm5C_site_11382 DeepMRMD:0.883603811264038;iRNA_m5C:0.999536712157747 Systolic blood pressure 11383 chr11 4112773 4112773 1 + C G rs61743670 4112784 + 4112764 4112804 41 GCTGAGCCCCTCAGCCCCACCTGGTGGCTCTCCACATTTGG GCTGAGCCCGTCAGCCCCACCTGGTGGCTCTCCACATTTGG < 41bp 1 0.62674944523269 1 0.544995546340942 experiment 0.74650110953462 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4112784 chr11:4112773 synonymous SNV . 0 10 hm5C_associated_SNPs_8926 1 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.910008907318116 0.999536712157815 hm5C_site_11383 DeepMRMD:0.910008907318116;iRNA_m5C:0.999536712157815 not specified not specified 11384 chr11 4112783 4112783 1 + C G rs139432975 4112784 + 4112764 4112804 41 GCTGAGCCCCTCAGCCCCACCTGGTGGCTCTCCACATTTGG GCTGAGCCCCTCAGCCCCAGCTGGTGGCTCTCCACATTTGG < 41bp 1 0.572356844510825 1 0.36118420958519 experiment 0.855286310978351 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4112784 chr11:4112783 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_8927 1 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11384 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 11385 chr11 6505757 6505757 1 + G A rs150061600 6505751 + 6505731 6505771 41 GGACCTTACCCACAGGGTGGCACTCTGTCCTTGGGAAATAT GGACCTTACCCACAGGGTGGCACTCTATCCTTGGGAAATAT < 41bp 1 0.282042711509104 1 0.0934167802333832 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TIMM10B ENSG00000132286 UTR3 Human protein_coding chr11:6505751 chr11:6505757 . . 0 27 hm5C_associated_SNPs_8929 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11385 DeepMRMD:1;iRNA_m5C:0.999536712157815 11386 chr11 6519407 6519407 1 + G C rs184014783 6519425 + 6519405 6519445 41 GGGCAAGGTCACTTCGACAGCAGTTGAATGCCCAGCTCCTC GGCCAAGGTCACTTCGACAGCAGTTGAATGCCCAGCTCCTC < 41bp 1 0.421991625584193 1 0.164299845695496 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNHD1 ENSG00000179532;ENSG00000265264 UTR5;UTR3 Human other chr11:6519425 chr11:6519407 . . 0 3 hm5C_associated_SNPs_8930 0 0 1 0 0 chromatin 1 0.500231643921094 1 0.999536712157813 hm5C_site_11386 DeepMRMD:1;iRNA_m5C:0.999536712157813 11387 chr11 7618796 7618796 1 + T C rs74051543 7618802 + 7618782 7618822 41 CTGGAACAGGTGAGTGTCCTCACAGACCAAGTAGAAGCCCA CTGGAACAGGTGAGCGTCCTCACAGACCAAGTAGAAGCCCA < 41bp 1 0.65210197428175 1 0.823915362358093 experiment 0.6957960514365 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7618802 chr11:7618796 synonymous SNV . 0 15 hm5C_associated_SNPs_8931 0 0 0 0 1 Cytosol 1 0.500231643919056 0.352169275283814 0.999536712161888 hm5C_site_11387 DeepMRMD:0.352169275283814;iRNA_m5C:0.999536712161888 11388 chr11 8009161 8009161 1 + G A rs143020927 8009163 + 8009143 8009183 41 CTTCCAGGGCCCTTCCCCGGCGGCCGCGTGGTCAGGCTGCA CTTCCAGGGCCCTTCCCCAGCGGCCGCGTGGTCAGGCTGCA < 41bp 1 0.588297751093426 1 0.736820340156555 experiment 0.823404497813149 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF3F ENSG00000175390 CDS Human protein_coding chr11:8009163 chr11:8009161 nonsynonymous SNV 0.993 0 19 hm5C_associated_SNPs_8932 0 0 0 0 0 Nucleus 1 0.500231643921025 0.52635931968689 0.999536712157951 hm5C_site_11388 DeepMRMD:0.52635931968689;iRNA_m5C:0.999536712157951 11389 chr11 8125833 8125833 1 + C T rs185654949 8125845 + 8125825 8125865 41 TCTGTAACCGCTTCTGGGGCCACACCCCAAAACTCTACACC TCTGTAACTGCTTCTGGGGCCACACCCCAAAACTCTACACC < 41bp 1 0.168228793546639 1 0.0983960330486298 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TUB ENSG00000166402 UTR3 Human protein_coding chr11:8125845 chr11:8125833 . . 0 9 hm5C_associated_SNPs_8933 0 0 1 0 0 nucleus 1 0.500231643917555 1 0.99953671216489 hm5C_site_11389 DeepMRMD:1;iRNA_m5C:0.99953671216489 11390 chr11 8704329 8704329 1 + G A rs80106507 8704345 + 8704325 8704365 41 TGGCGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGT TGGCAAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGT < 41bp 1 0.471461563740513 1 0.544714331626892 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704345 chr11:8704329 . . 0 5 hm5C_associated_SNPs_8934 0 0 1 0 1 Cytosol 1 0.500231555672986 0.910571336746216 0.999536888654028 hm5C_site_11390 DeepMRMD:0.910571336746216;iRNA_m5C:0.999536888654028 11391 chr11 8704329 8704329 1 + G A rs80106507 8704348 + 8704328 8704368 41 CGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGTAGG CAAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGTAGG < 41bp 1 0.654033033765873 1 0.122867047786713 experiment 0.691933932468254 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704348 chr11:8704329 . . 0 2 hm5C_associated_SNPs_8935 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11391 DeepMRMD:1;iRNA_m5C:0.999536712157815 11392 chr11 8704338 8704338 1 + C A rs199764465 8704345 + 8704325 8704365 41 TGGCGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGT TGGCGAAGGCCTTACTTTTTCGTCTGGGCTGCCAACATGGT < 41bp 1 0.450557341233859 1 0.352580517530441 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704345 chr11:8704338 . . 0 14 hm5C_associated_SNPs_8936 0 0 1 0 1 Cytosol 1 0.500231657373321 1 0.999536685253359 hm5C_site_11392 DeepMRMD:1;iRNA_m5C:0.999536685253359 11393 chr11 8704338 8704338 1 + C A rs199764465 8704348 + 8704328 8704368 41 CGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGTAGG CGAAGGCCTTACTTTTTCGTCTGGGCTGCCAACATGGTAGG < 41bp 1 0.665084088110351 1 0.207617282867432 experiment 0.669831823779299 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704348 chr11:8704338 . . 0 11 hm5C_associated_SNPs_8937 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11393 DeepMRMD:1;iRNA_m5C:0.999536712157815 11394 chr11 8704338 8704338 1 + C A rs199764465 8704353 + 8704333 8704373 41 GCCTTCCTTTTTCGTCTGGGCTGCCAACATGGTAGGTGTTT GCCTTACTTTTTCGTCTGGGCTGCCAACATGGTAGGTGTTT < 41bp 1 0.350314785184927 1 0.0504456460475922 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704353 chr11:8704338 . . 0 6 hm5C_associated_SNPs_8938 0 0 1 0 1 Cytosol 1 0.500231573369601 1 0.999536853260798 hm5C_site_11394 DeepMRMD:1;iRNA_m5C:0.999536853260798 11395 chr11 8704338 8704338 1 + C A rs199764465 8704357 + 8704337 8704377 41 TCCTTTTTCGTCTGGGCTGCCAACATGGTAGGTGTTTCGTT TACTTTTTCGTCTGGGCTGCCAACATGGTAGGTGTTTCGTT < 41bp 1 0.592440356858196 1 0.561107754707336 experiment 0.815119286283608 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704357 chr11:8704338 . . 0 2 hm5C_associated_SNPs_8939 0 0 1 0 1 Cytosol 1 0.500231643930076 0.877784490585328 0.999536712139847 hm5C_site_11395 DeepMRMD:0.877784490585328;iRNA_m5C:0.999536712139847 11396 chr11 8706406 8706406 1 + T G rs4670 8706393 + 8706373 8706413 41 ACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGGCTG ACAGACACGGGTGAATGCTGCTAAAAACAAGACGGGGGCTG < 41bp 1 0.645568330562295 1 0.56515371799469 experiment 0.70886333887541 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL27A ENSG00000166441 CDS Human protein_coding chr11:8706393 chr11:8706406 synonymous SNV . 0 34 hm5C_associated_SNPs_8940 0 0 1 0 1 Cytosol 1 0.500231643609817 0.86969256401062 0.999536712780366 hm5C_site_11396 DeepMRMD:0.86969256401062;iRNA_m5C:0.999536712780366 11397 chr11 8707011 8707011 1 + A G rs375348244 8707005 + 8706985 8707025 41 TGCCGAGACTAGAGTCACATCCTGACACAACTCTTGTCCTG TGCCGAGACTAGAGTCACATCCTGACGCAACTCTTGTCCTG < 41bp 1 0.319807424629308 1 0.18434002995491 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707005 chr11:8707011 . . 0 27 hm5C_associated_SNPs_8942 0 0 1 1 0 unknown 1 0.500231643928626 1 0.999536712142748 hm5C_site_11397 DeepMRMD:1;iRNA_m5C:0.999536712142748 11398 chr11 8707011 8707011 1 + A G rs375348244 8707006 + 8706986 8707026 41 GCCGAGACTAGAGTCACATCCTGACACAACTCTTGTCCTGG GCCGAGACTAGAGTCACATCCTGACGCAACTCTTGTCCTGG < 41bp 1 0.222980435450771 1 0.686380445957184 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707006 chr11:8707011 . . 0 26 hm5C_associated_SNPs_8943 0 0 1 1 0 unknown 1 0.500231643945173 0.627239108085632 0.999536712109653 hm5C_site_11398 DeepMRMD:0.627239108085632;iRNA_m5C:0.999536712109653 11399 chr11 8707011 8707011 1 + A G rs375348244 8707010 + 8706990 8707030 41 AGACTAGAGTCACATCCTGACACAACTCTTGTCCTGGTGTG AGACTAGAGTCACATCCTGACGCAACTCTTGTCCTGGTGTG < 41bp 1 0.45430713584209 1 0.738164722919464 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707010 chr11:8707011 . . 0 22 hm5C_associated_SNPs_8944 0 0 1 1 0 unknown 1 0.50023164392109 0.523670554161072 0.999536712157821 hm5C_site_11399 DeepMRMD:0.523670554161072;iRNA_m5C:0.999536712157821 11400 chr11 8707011 8707011 1 + A G rs375348244 8707017 + 8706997 8707037 41 AGTCACATCCTGACACAACTCTTGTCCTGGTGTGCTAGAGT AGTCACATCCTGACGCAACTCTTGTCCTGGTGTGCTAGAGT < 41bp 1 0.135408888737931 1 0.105053573846817 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707017 chr11:8707011 . . 0 15 hm5C_associated_SNPs_8945 0 0 1 1 0 unknown 1 0.500231644170804 1 0.999536711658391 hm5C_site_11400 DeepMRMD:1;iRNA_m5C:0.999536711658391 11401 chr11 8707082 8707082 1 + C T rs372448230 8707068 + 8707048 8707088 41 AATCTACTGGTCTTGATTCACTGGTGGGGGCAGTCGGTGCC AATCTACTGGTCTTGATTCACTGGTGGGGGCAGTTGGTGCC < 41bp 1 0.599108818024623 1 0.578932285308838 experiment 0.801782363950754 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707068 chr11:8707082 . . 0 35 hm5C_associated_SNPs_8946 0 0 1 0 0 unknown 1 0.500231643921092 0.842135429382324 0.999536712157815 hm5C_site_11401 DeepMRMD:0.842135429382324;iRNA_m5C:0.999536712157815 11402 chr11 8707082 8707082 1 + C T rs372448230 8707078 + 8707058 8707098 41 TCTTGATTCACTGGTGGGGGCAGTCGGTGCCCCCGTTAGTG TCTTGATTCACTGGTGGGGGCAGTTGGTGCCCCCGTTAGTG < 41bp 1 0.13229316768076 1 0.329607725143433 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707078 chr11:8707082 . . 0 25 hm5C_associated_SNPs_8947 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11402 DeepMRMD:1;iRNA_m5C:0.999536712157815 11403 chr11 8707082 8707082 1 + C T rs372448230 8707087 + 8707067 8707107 41 ACTGGTGGGGGCAGTCGGTGCCCCCGTTAGTGCCCAGATCA ACTGGTGGGGGCAGTTGGTGCCCCCGTTAGTGCCCAGATCA < 41bp 1 0.125393821102345 1 0.391262710094452 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707087 chr11:8707082 . . 0 16 hm5C_associated_SNPs_8948 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11403 DeepMRMD:1;iRNA_m5C:0.999536712157815 11404 chr11 8707082 8707082 1 + C T rs372448230 8707088 + 8707068 8707108 41 CTGGTGGGGGCAGTCGGTGCCCCCGTTAGTGCCCAGATCAG CTGGTGGGGGCAGTTGGTGCCCCCGTTAGTGCCCAGATCAG < 41bp 1 0.231565774869247 1 0.280824989080429 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707088 chr11:8707082 . . 0 15 hm5C_associated_SNPs_8949 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11404 DeepMRMD:1;iRNA_m5C:0.999536712157815 11405 chr11 8707082 8707082 1 + C T rs372448230 8707089 + 8707069 8707109 41 TGGTGGGGGCAGTCGGTGCCCCCGTTAGTGCCCAGATCAGA TGGTGGGGGCAGTTGGTGCCCCCGTTAGTGCCCAGATCAGA < 41bp 1 0.202103681203299 1 0.307676374912262 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707089 chr11:8707082 . . 0 14 hm5C_associated_SNPs_8950 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11405 DeepMRMD:1;iRNA_m5C:0.999536712157815 11406 chr11 8707082 8707082 1 + C T rs372448230 8707090 + 8707070 8707110 41 GGTGGGGGCAGTCGGTGCCCCCGTTAGTGCCCAGATCAGAA GGTGGGGGCAGTTGGTGCCCCCGTTAGTGCCCAGATCAGAA < 41bp 1 0.052572560565127 1 0.19342914223671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707090 chr11:8707082 . . 0 13 hm5C_associated_SNPs_8951 0 0 1 0 0 unknown 1 0.5002316436386 1 0.9995367127228 hm5C_site_11406 DeepMRMD:1;iRNA_m5C:0.9995367127228 11407 chr11 8707082 8707082 1 + C T rs372448230 8707091 + 8707071 8707111 41 GTGGGGGCAGTCGGTGCCCCCGTTAGTGCCCAGATCAGAAA GTGGGGGCAGTTGGTGCCCCCGTTAGTGCCCAGATCAGAAA < 41bp 1 0.237132200853078 1 0.388334512710571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707091 chr11:8707082 . . 0 12 hm5C_associated_SNPs_8952 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11407 DeepMRMD:1;iRNA_m5C:0.999536712157815 11408 chr11 8707082 8707082 1 + C T rs372448230 8707100 + 8707080 8707120 41 GTCGGTGCCCCCGTTAGTGCCCAGATCAGAAACATACATAC GTTGGTGCCCCCGTTAGTGCCCAGATCAGAAACATACATAC < 41bp 1 0.576026218577268 1 0.443482100963593 experiment 0.847947562845465 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707100 chr11:8707082 . . 0 3 hm5C_associated_SNPs_8953 0 0 1 0 0 unknown 1 0.500231485235104 1 0.999537029529792 hm5C_site_11408 DeepMRMD:1;iRNA_m5C:0.999537029529792 11409 chr11 8707083 8707083 1 + G A rs2073686 8707068 + 8707048 8707088 41 AATCTACTGGTCTTGATTCACTGGTGGGGGCAGTCGGTGCC AATCTACTGGTCTTGATTCACTGGTGGGGGCAGTCAGTGCC < 41bp 1 0.592879656776188 1 0.371241688728333 experiment 0.814240686447623 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707068 chr11:8707083 . . 0 36 hm5C_associated_SNPs_8954 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11409 DeepMRMD:1;iRNA_m5C:0.999536712157815 11410 chr11 8707083 8707083 1 + G A rs2073686 8707078 + 8707058 8707098 41 TCTTGATTCACTGGTGGGGGCAGTCGGTGCCCCCGTTAGTG TCTTGATTCACTGGTGGGGGCAGTCAGTGCCCCCGTTAGTG < 41bp 1 0.0703357650653772 1 0.235172271728516 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707078 chr11:8707083 . . 0 26 hm5C_associated_SNPs_8955 0 0 1 0 0 unknown 1 0.500231643921057 1 0.999536712157886 hm5C_site_11410 DeepMRMD:1;iRNA_m5C:0.999536712157886 11411 chr11 8707083 8707083 1 + G A rs2073686 8707082 + 8707062 8707102 41 GATTCACTGGTGGGGGCAGTCGGTGCCCCCGTTAGTGCCCA GATTCACTGGTGGGGGCAGTCAGTGCCCCCGTTAGTGCCCA < 41bp 1 0.587286032711539 1 0.904121339321136 experiment 0.825427934576922 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707082 chr11:8707083 . . 0 22 hm5C_associated_SNPs_8956 0 0 1 0 0 unknown 1 0.500231644465165 0.191757321357728 0.999536711069669 hm5C_site_11411 DeepMRMD:0.191757321357728;iRNA_m5C:0.999536711069669 11412 chr11 8707083 8707083 1 + G A rs2073686 8707087 + 8707067 8707107 41 ACTGGTGGGGGCAGTCGGTGCCCCCGTTAGTGCCCAGATCA ACTGGTGGGGGCAGTCAGTGCCCCCGTTAGTGCCCAGATCA < 41bp 1 0.143284557428013 1 0.459369242191315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707087 chr11:8707083 . . 0 17 hm5C_associated_SNPs_8957 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11412 DeepMRMD:1;iRNA_m5C:0.999536712157815 11413 chr11 8707083 8707083 1 + G A rs2073686 8707088 + 8707068 8707108 41 CTGGTGGGGGCAGTCGGTGCCCCCGTTAGTGCCCAGATCAG CTGGTGGGGGCAGTCAGTGCCCCCGTTAGTGCCCAGATCAG < 41bp 1 0.226874449609968 1 0.36346709728241 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707088 chr11:8707083 . . 0 16 hm5C_associated_SNPs_8958 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11413 DeepMRMD:1;iRNA_m5C:0.999536712157815 11414 chr11 8707083 8707083 1 + G A rs2073686 8707089 + 8707069 8707109 41 TGGTGGGGGCAGTCGGTGCCCCCGTTAGTGCCCAGATCAGA TGGTGGGGGCAGTCAGTGCCCCCGTTAGTGCCCAGATCAGA < 41bp 1 0.212917952823427 1 0.375260233879089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707089 chr11:8707083 . . 0 15 hm5C_associated_SNPs_8959 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11414 DeepMRMD:1;iRNA_m5C:0.999536712157815 11415 chr11 8707083 8707083 1 + G A rs2073686 8707090 + 8707070 8707110 41 GGTGGGGGCAGTCGGTGCCCCCGTTAGTGCCCAGATCAGAA GGTGGGGGCAGTCAGTGCCCCCGTTAGTGCCCAGATCAGAA < 41bp 1 0.0439423964282576 1 0.221392750740051 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707090 chr11:8707083 . . 0 14 hm5C_associated_SNPs_8960 0 0 1 0 0 unknown 1 0.500231643636104 1 0.999536712727793 hm5C_site_11415 DeepMRMD:1;iRNA_m5C:0.999536712727793 11416 chr11 8707083 8707083 1 + G A rs2073686 8707091 + 8707071 8707111 41 GTGGGGGCAGTCGGTGCCCCCGTTAGTGCCCAGATCAGAAA GTGGGGGCAGTCAGTGCCCCCGTTAGTGCCCAGATCAGAAA < 41bp 1 0.213030074183513 1 0.211630165576935 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707091 chr11:8707083 . . 0 13 hm5C_associated_SNPs_8961 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11416 DeepMRMD:1;iRNA_m5C:0.999536712157815 11417 chr11 8707083 8707083 1 + G A rs2073686 8707100 + 8707080 8707120 41 GTCGGTGCCCCCGTTAGTGCCCAGATCAGAAACATACATAC GTCAGTGCCCCCGTTAGTGCCCAGATCAGAAACATACATAC < 41bp 1 0.50751131148838 1 0.358365535736084 experiment 0.984977377023241 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA3B ENSG00000212607 ncRNA_exonic Human snoRNA chr11:8707100 chr11:8707083 . . 0 4 hm5C_associated_SNPs_8962 0 0 1 0 0 unknown 1 0.500231487382996 1 0.999537025234008 hm5C_site_11417 DeepMRMD:1;iRNA_m5C:0.999537025234008 11418 chr11 8707853 8707853 1 + A C rs367695563 8707833 + 8707813 8707853 41 TCTCTTGCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCA TCTCTTGCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCC < 41bp 1 0.680077538458475 1 0.805017292499542 experiment 0.63984492308305 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RPL27A ENSG00000166441 UTR3 Human protein_coding chr11:8707833 chr11:8707853 . . 0 41 hm5C_associated_SNPs_8963 0 0 1 0 0 Cytosol 1 0.500231643920693 0.389965415000916 0.999536712158613 hm5C_site_11418 DeepMRMD:0.389965415000916;iRNA_m5C:0.999536712158613 11419 chr11 8707853 8707853 1 + A C rs367695563 8707841 + 8707821 8707861 41 CAGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAGCC CAGGCTGGAGTGCAGTGGCACGATCTCGGCTCCCTGCAGCC < 41bp 1 0.204586784061584 1 0.275211840867996 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control RPL27A ENSG00000166441 UTR3 Human protein_coding chr11:8707841 chr11:8707853 . . 0 33 hm5C_associated_SNPs_8964 0 0 1 0 0 Cytosol 1 0.500231643920736 1 0.999536712158529 hm5C_site_11419 DeepMRMD:1;iRNA_m5C:0.999536712158529 11420 chr11 8707853 8707853 1 + A C rs367695563 8707850 + 8707830 8707870 41 GTGCAGTGGCACGATCTCGGCTCACTGCAGCCTCCGCCTCC GTGCAGTGGCACGATCTCGGCTCCCTGCAGCCTCCGCCTCC < 41bp 1 0.435613054756388 1 0.113445967435837 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RPL27A ENSG00000166441 UTR3 Human protein_coding chr11:8707850 chr11:8707853 . . 0 24 hm5C_associated_SNPs_8965 0 0 1 0 0 Cytosol 1 0.500231643945149 1 0.999536712109702 hm5C_site_11420 DeepMRMD:1;iRNA_m5C:0.999536712109702 11421 chr11 8707853 8707853 1 + A C rs367695563 8707852 + 8707832 8707872 41 GCAGTGGCACGATCTCGGCTCACTGCAGCCTCCGCCTCCCA GCAGTGGCACGATCTCGGCTCCCTGCAGCCTCCGCCTCCCA < 41bp 1 0.164917279519957 1 0.0175731182098389 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RPL27A ENSG00000166441 UTR3 Human protein_coding chr11:8707852 chr11:8707853 . . 0 22 hm5C_associated_SNPs_8966 0 0 1 0 0 Cytosol 1 0.500231643921086 1 0.999536712157828 hm5C_site_11421 DeepMRMD:1;iRNA_m5C:0.999536712157828 11422 chr11 8941215 8941215 1 + A G rs4910157 8941225 + 8941205 8941245 41 AGACAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCG AGACAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCG < 41bp 1 0.403394128012853 1 0.30461174249649 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKIP1 ENSG00000166452 UTR3 Human protein_coding chr11:8941225 chr11:8941215 . . 0 11 hm5C_associated_SNPs_8967 0 1 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_11422 DeepMRMD:1;iRNA_m5C:0.999536712157816 11423 chr11 8941215 8941215 1 + A G rs4910157 8941226 + 8941206 8941246 41 GACAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGT GACAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGT < 41bp 1 0.396635148203866 1 0.719988942146301 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKIP1 ENSG00000166452 UTR3 Human protein_coding chr11:8941226 chr11:8941215 . . 0 10 hm5C_associated_SNPs_8968 0 1 1 1 0 Ribosome 1 0.500231382915233 0.560022115707398 0.999537234169535 hm5C_site_11423 DeepMRMD:0.560022115707398;iRNA_m5C:0.999537234169535 11424 chr11 8941258 8941258 1 + A C rs577867262 8941238 + 8941218 8941258 41 CTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCA CTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCC < 41bp 1 0.558977169469478 1 0.530231475830078 experiment 0.882045661061044 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKIP1 ENSG00000166452 UTR3 Human protein_coding chr11:8941238 chr11:8941258 . . 0 41 hm5C_associated_SNPs_8969 0 0 0 0 0 Ribosome 1 0.500231643921092 0.939537048339844 0.999536712157815 hm5C_site_11424 DeepMRMD:0.939537048339844;iRNA_m5C:0.999536712157815 11425 chr11 8941258 8941258 1 + A C rs577867262 8941255 + 8941235 8941275 41 GTGCAGTGGCGTGATCTCGGCTCACTGCAAGTTCCGCCTCC GTGCAGTGGCGTGATCTCGGCTCCCTGCAAGTTCCGCCTCC < 41bp 1 0.452723189493446 1 0.368212759494781 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKIP1 ENSG00000166452 UTR3 Human protein_coding chr11:8941255 chr11:8941258 . . 0 24 hm5C_associated_SNPs_8971 0 0 0 0 0 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_11425 DeepMRMD:1;iRNA_m5C:0.999536712157812 11426 chr11 8941260 8941260 1 + T C rs4910158 8941255 + 8941235 8941275 41 GTGCAGTGGCGTGATCTCGGCTCACTGCAAGTTCCGCCTCC GTGCAGTGGCGTGATCTCGGCTCACCGCAAGTTCCGCCTCC < 41bp 1 0.34189397741659 1 0.0668290555477142 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKIP1 ENSG00000166452 UTR3 Human protein_coding chr11:8941255 chr11:8941260 . . 0 26 hm5C_associated_SNPs_8972 0 0 0 0 0 Ribosome 1 0.500231643923019 1 0.999536712153962 hm5C_site_11426 DeepMRMD:1;iRNA_m5C:0.999536712153962 11427 chr11 8941345 8941345 1 + G A rs150050180 8941337 + 8941317 8941357 41 GGCACTACAGGCACCCGCCACCATGCCCGGCTATTTTTTTT GGCACTACAGGCACCCGCCACCATGCCCAGCTATTTTTTTT < 41bp 1 0.0615766561810097 1 0.372723937034607 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKIP1 ENSG00000166452 UTR3 Human protein_coding chr11:8941337 chr11:8941345 . . 0 29 hm5C_associated_SNPs_8973 0 0 0 0 0 Ribosome 1 0.500231902791016 1 0.999536194417969 hm5C_site_11427 DeepMRMD:1;iRNA_m5C:0.999536194417969 11428 chr11 9406234 9406234 1 + G A rs188545367 9406215 + 9406195 9406235 41 CTTTCCTTTCGCGCCGGTTGCCGCTGCGGAGCGCGGCGGGT CTTTCCTTTCGCGCCGGTTGCCGCTGCGGAGCGCGGCGGAT < 41bp 1 0.501483967871657 1 0.192061573266983 experiment 0.997032064256685 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IPO7 ENSG00000205339 UTR5 Human protein_coding chr11:9406215 chr11:9406234 . . 0 40 hm5C_associated_SNPs_8975 0 0 1 0 0 Cytosol 1 0.500231643956705 1 0.999536712086589 hm5C_site_11428 DeepMRMD:1;iRNA_m5C:0.999536712086589 11429 chr11 9450327 9450327 1 + T A rs115665601 9450318 + 9450298 9450338 41 TAATGTAAATCTTTACATGGCTGCTGTAATGTGTGCATAGG TAATGTAAATCTTTACATGGCTGCTGTAAAGTGTGCATAGG < 41bp 1 0.121967093501014 1 0.0564581155776978 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450318 chr11:9450327 . . 0 30 hm5C_associated_SNPs_8976 0 0 1 0 0 unknown 1 0.50023164392883 1 0.99953671214234 hm5C_site_11429 DeepMRMD:1;iRNA_m5C:0.99953671214234 11430 chr11 9450327 9450327 1 + T A rs115665601 9450345 + 9450325 9450365 41 AATGTGTGCATAGGTTTCATCTGTGTCTGGTAGCAGTGTCT AAAGTGTGCATAGGTTTCATCTGTGTCTGGTAGCAGTGTCT < 41bp 1 0.101719159034742 1 0.393026471138 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450345 chr11:9450327 . . 0 3 hm5C_associated_SNPs_8977 0 0 1 0 0 unknown 1 0.500231937751426 1 0.999536124497147 hm5C_site_11430 DeepMRMD:1;iRNA_m5C:0.999536124497147 11431 chr11 9450377 9450377 1 + T G rs2290423 9450358 + 9450338 9450378 41 GTTTCATCTGTGTCTGGTAGCAGTGTCTGTCTGTGTTTTTC GTTTCATCTGTGTCTGGTAGCAGTGTCTGTCTGTGTTTTGC < 41bp 1 0.16061987434005 1 0.326037287712097 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450358 chr11:9450377 . . 0 40 hm5C_associated_SNPs_8978 0 0 1 1 0 unknown 1 0.501015148572646 1 0.997969702854709 hm5C_site_11431 DeepMRMD:1;iRNA_m5C:0.997969702854709 11432 chr11 9450377 9450377 1 + T G rs2290423 9450364 + 9450344 9450384 41 TCTGTGTCTGGTAGCAGTGTCTGTCTGTGTTTTTCATTCAG TCTGTGTCTGGTAGCAGTGTCTGTCTGTGTTTTGCATTCAG < 41bp 1 0.0662625049210205 1 0.154646307229996 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450364 chr11:9450377 . . 0 34 hm5C_associated_SNPs_8979 0 0 1 1 0 unknown 1 0.500240643335628 1 0.999518713328744 hm5C_site_11432 DeepMRMD:1;iRNA_m5C:0.999518713328744 11433 chr11 9450377 9450377 1 + T G rs2290423 9450378 + 9450358 9450398 41 CAGTGTCTGTCTGTGTTTTTCATTCAGATCTTGCTATCCAC CAGTGTCTGTCTGTGTTTTGCATTCAGATCTTGCTATCCAC < 41bp 1 0.0406991547419373 1 0.0544078350067139 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450378 chr11:9450377 . . 0 20 hm5C_associated_SNPs_8980 0 0 1 1 0 unknown 1 0.500233527471237 1 0.999532945057527 hm5C_site_11433 DeepMRMD:1;iRNA_m5C:0.999532945057527 11434 chr11 9450377 9450377 1 + T G rs2290423 9450382 + 9450362 9450402 41 GTCTGTCTGTGTTTTTCATTCAGATCTTGCTATCCACACAA GTCTGTCTGTGTTTTGCATTCAGATCTTGCTATCCACACAA < 41bp 1 0.244300043438865 1 0.512649893760681 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450382 chr11:9450377 . . 0 16 hm5C_associated_SNPs_8981 0 0 1 1 0 unknown 1 0.500232342007598 0.974700212478638 0.999535315984803 hm5C_site_11434 DeepMRMD:0.974700212478638;iRNA_m5C:0.999535315984803 11435 chr11 9450377 9450377 1 + T G rs2290423 9450395 + 9450375 9450415 41 TTTCATTCAGATCTTGCTATCCACACAAACATCATGCGGCC TTGCATTCAGATCTTGCTATCCACACAAACATCATGCGGCC < 41bp 1 0.257992158263599 1 0.0410154759883881 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450395 chr11:9450377 . . 0 3 hm5C_associated_SNPs_8982 0 0 1 1 0 unknown 1 0.5002316438495 1 0.999536712300999 hm5C_site_11435 DeepMRMD:1;iRNA_m5C:0.999536712300999 11436 chr11 9450377 9450377 1 + T G rs2290423 9450396 + 9450376 9450416 41 TTCATTCAGATCTTGCTATCCACACAAACATCATGCGGCCA TGCATTCAGATCTTGCTATCCACACAAACATCATGCGGCCA < 41bp 1 0.15681403889929 1 0.0500051081180573 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA23 ENSG00000201998 ncRNA_exonic Human snoRNA chr11:9450396 chr11:9450377 . . 0 2 hm5C_associated_SNPs_8983 0 0 1 1 0 unknown 1 0.500221837144531 1 0.999556325710939 hm5C_site_11436 DeepMRMD:1;iRNA_m5C:0.999556325710939 11437 chr11 9462003 9462003 1 + G A rs61729812 9462007 + 9461987 9462027 41 ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATGAT ATTATGACTTGGCAGAAGAACTGGGGAGTGATGAAGATGAT < 41bp 1 0.664809162155945 1 0.525290846824646 experiment 0.670381675688109 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462007 chr11:9462003 synonymous SNV . 0 17 hm5C_associated_SNPs_8984 0 0 1 0 1 Cytosol 1 0.500231643930898 0.949418306350708 0.999536712138205 hm5C_site_11437 DeepMRMD:0.949418306350708;iRNA_m5C:0.999536712138205 11438 chr11 9801451 9801451 1 + G A rs3829252 9801434 - 9801414 9801454 41 ATGCTTCCATGGTCCGTGCTCTGCCAGTGGGGTTCACAACA ATGTTTCCATGGTCCGTGCTCTGCCAGTGGGGTTCACAACA < 41bp 1 0.226801438150044 1 0.136349231004715 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SBF2-AS1 ENSG00000246273 ncRNA_exonic Human antisense chr11:9801434 chr11:9801451 . . 0 4 hm5C_associated_SNPs_8989 1 0 1 0 0 unknown 1 0.50023164401703 1 0.999536711965939 hm5C_site_11438 DeepMRMD:1;iRNA_m5C:0.999536711965939 Charcot-Marie-Tooth, Type 4 Charcot-Marie-Tooth, Type 4 11439 chr11 10783514 10783514 1 + T C rs116362368 10783524 + 10783504 10783544 41 TTAAAAATGGTGTCCAGCTTCTTTCCAGAGCCTATACTATT TTAAAAATGGCGTCCAGCTTCTTTCCAGAGCCTATACTATT < 41bp 1 0.0382834813103294 1 0.064091682434082 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTR9 ENSG00000198730 CDS Human protein_coding chr11:10783524 chr11:10783514 synonymous SNV . 0 11 hm5C_associated_SNPs_8990 0 0 1 0 2 Cytosol 1 0.500231643921156 1 0.999536712157688 hm5C_site_11439 DeepMRMD:1;iRNA_m5C:0.999536712157688 11440 chr11 12183678 12183678 1 + C G rs144768118 12183673 + 12183653 12183693 41 CTGTTCACCTGTGTCCTCGCCGCACCACTGCCGCACACGAC CTGTTCACCTGTGTCCTCGCCGCACGACTGCCGCACACGAC < 41bp 1 0.217745443817066 1 0.756027102470398 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MICAL2 ENSG00000133816 UTR5 Human protein_coding chr11:12183673 chr11:12183678 . . 0 26 hm5C_associated_SNPs_8991 0 0 0 0 0 Ribosome 1 0.500023266173785 0.487945795059204 0.99995346765243 hm5C_site_11440 DeepMRMD:0.487945795059204;iRNA_m5C:0.99995346765243 11441 chr11 12281427 12281427 1 + T C rs1027335 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCCGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.621157881172017 1 0.129980742931366 experiment 0.757684237655966 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281427 nonsynonymous SNV 0.062 0 6 hm5C_associated_SNPs_8992 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11441 DeepMRMD:1;iRNA_m5C:0.999536712157815 11442 chr11 12281438 12281438 1 + C T rs35518829 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCTGGAAGGCAGCTCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.69362986172459 1 0.246012181043625 experiment 0.612740276550821 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281438 nonsynonymous SNV 0.993 0 17 hm5C_associated_SNPs_8993 0 0 1 1 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11442 DeepMRMD:1;iRNA_m5C:0.999536712157815 11443 chr11 12960082 12960082 1 + T C rs16911828 12960096 + 12960076 12960116 41 TGTGTCTGTAGACTTAGATACATCCTCTTGAAGCACATCCA TGTGTCCGTAGACTTAGATACATCCTCTTGAAGCACATCCA < 41bp 1 0.052839927359674 1 0.0349018573760986 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TEAD1 ENSG00000187079 UTR3 Human protein_coding chr11:12960096 chr11:12960082 . . 0 7 hm5C_associated_SNPs_8994 0 0 1 0 0 Cytosol 1 0.500231643457522 1 0.999536713084956 hm5C_site_11443 DeepMRMD:1;iRNA_m5C:0.999536713084956 11444 chr11 12960082 12960082 1 + T C rs16911828 12960099 + 12960079 12960119 41 GTCTGTAGACTTAGATACATCCTCTTGAAGCACATCCATTT GTCCGTAGACTTAGATACATCCTCTTGAAGCACATCCATTT < 41bp 1 0.055271030518557 1 0.014893114566803 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TEAD1 ENSG00000187079 UTR3 Human protein_coding chr11:12960099 chr11:12960082 . . 0 4 hm5C_associated_SNPs_8995 0 0 1 0 0 Cytosol 1 0.500231643923595 1 0.999536712152811 hm5C_site_11444 DeepMRMD:1;iRNA_m5C:0.999536712152811 11445 chr11 12960082 12960082 1 + T C rs16911828 12960100 + 12960080 12960120 41 TCTGTAGACTTAGATACATCCTCTTGAAGCACATCCATTTC TCCGTAGACTTAGATACATCCTCTTGAAGCACATCCATTTC < 41bp 1 0.12432057927974 1 0.034503161907196 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TEAD1 ENSG00000187079 UTR3 Human protein_coding chr11:12960100 chr11:12960082 . . 0 3 hm5C_associated_SNPs_8996 0 0 1 0 0 Cytosol 1 0.500231495914292 1 0.999537008171417 hm5C_site_11445 DeepMRMD:1;iRNA_m5C:0.999537008171417 11446 chr11 16778212 16778212 1 + T C rs190401167 16778204 + 16778184 16778224 41 GGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCCGAG GGTGGCTCACACCTATAATCCCAGCACTCTGGGAGGCCGAG < 41bp 1 0.42570063098325 1 0.123147428035736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C11orf58 ENSG00000110696 downstream Human protein_coding chr11:16778204 chr11:16778212 . . 0 29 hm5C_associated_SNPs_8998 0 0 0 0 0 Ribosome 1 0.50023156880556 1 0.999536862388881 hm5C_site_11446 DeepMRMD:1;iRNA_m5C:0.999536862388881 11447 chr11 16778212 16778212 1 + T C rs190401167 16778208 + 16778188 16778228 41 GCTCACACCTATAATCCCAGCACTTTGGGAGGCCGAGGTGG GCTCACACCTATAATCCCAGCACTCTGGGAGGCCGAGGTGG < 41bp 1 0.419382392167889 1 0.0247286856174469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C11orf58 ENSG00000110696 downstream Human protein_coding chr11:16778208 chr11:16778212 . . 0 25 hm5C_associated_SNPs_8999 0 0 0 0 0 Ribosome 1 0.500231657389217 1 0.999536685221567 hm5C_site_11447 DeepMRMD:1;iRNA_m5C:0.999536685221567 11448 chr11 16778212 16778212 1 + T C rs190401167 16778210 + 16778190 16778230 41 TCACACCTATAATCCCAGCACTTTGGGAGGCCGAGGTGGCT TCACACCTATAATCCCAGCACTCTGGGAGGCCGAGGTGGCT < 41bp 1 0.566044523311785 1 0.174729228019714 experiment 0.867910953376431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C11orf58 ENSG00000110696 downstream Human protein_coding chr11:16778210 chr11:16778212 . . 0 23 hm5C_associated_SNPs_9000 0 0 0 0 0 Ribosome 1 0.500231643921758 1 0.999536712156484 hm5C_site_11448 DeepMRMD:1;iRNA_m5C:0.999536712156484 11449 chr11 17373464 17373464 1 + C A rs72865007 17373472 + 17373452 17373492 41 CTTGGTTTCTACCGGGCCGCCTGCTCCCACTCGGCGAAAAA CTTGGTTTCTACAGGGCCGCCTGCTCCCACTCGGCGAAAAA < 41bp 1 0.309283585294804 1 0.0844747722148895 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCR3LG1 ENSG00000188211 UTR5 Human protein_coding chr11:17373472 chr11:17373464 . . 0 13 hm5C_associated_SNPs_9001 0 0 1 0 0 Nucleus 1 0.500231610750803 1 0.999536778498394 hm5C_site_11449 DeepMRMD:1;iRNA_m5C:0.999536778498394 11450 chr11 17393588 17393588 1 + C G rs565899443 17393604 + 17393584 17393624 41 CTCTCAAGTGCATTCTGAAACACTGGAACTCCTTTGACACT CTCTGAAGTGCATTCTGAAACACTGGAACTCCTTTGACACT < 41bp 1 0.339127134889763 1 0.091413676738739 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NCR3LG1 ENSG00000188211 CDS Human protein_coding chr11:17393604 chr11:17393588 synonymous SNV . 0 5 hm5C_associated_SNPs_9002 0 0 1 0 1 Nucleus 1 0.50023124270804 1 0.99953751458392 hm5C_site_11450 DeepMRMD:1;iRNA_m5C:0.99953751458392 11451 chr11 19173749 19173749 1 + A G rs202012922 19173768 + 19173748 19173788 41 AATGTGGTTGATAAAATACACCAAAACACTCCACTTCACTG AGTGTGGTTGATAAAATACACCAAAACACTCCACTTCACTG < 41bp 1 0.456954827861486 1 0.0830844044685364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZDHHC13 ENSG00000177054 CDS Human protein_coding chr11:19173768 chr11:19173749 nonsynonymous SNV 0.996 0 2 hm5C_associated_SNPs_9003 0 0 1 0 1 Nucleus 1 0.500232026465043 1 0.999535947069913 hm5C_site_11451 DeepMRMD:1;iRNA_m5C:0.999535947069913 11452 chr11 19955500 19955500 1 + A G rs1372989 19955508 + 19955488 19955528 41 ACCAGGAATGAAAAGCATGCCCGGGAAATCCCCAAGTGCCC ACCAGGAATGAAGAGCATGCCCGGGAAATCCCCAAGTGCCC < 41bp 1 0.34099493477587 1 0.430767267942429 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:19955508 chr11:19955500 synonymous SNV . 0 13 hm5C_associated_SNPs_9004 0 0 0 0 0 Nucleus 1 0.500231643758074 1 0.999536712483851 hm5C_site_11452 DeepMRMD:1;iRNA_m5C:0.999536712483851 11453 chr11 19970252 19970252 1 + G A rs78430105 19970261 + 19970241 19970281 41 TTGGAAACCACGTTTGACACCAATGTCACCACGGAGATGAG TTGGAAACCACATTTGACACCAATGTCACCACGGAGATGAG < 41bp 1 0.0565504002532685 1 0.0641260147094727 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:19970261 chr11:19970252 synonymous SNV . 0 12 hm5C_associated_SNPs_9005 0 0 0 0 1 Nucleus 1 0.50023164405512 1 0.999536711889759 hm5C_site_11453 DeepMRMD:1;iRNA_m5C:0.999536711889759 11454 chr11 19970273 19970273 1 + G A rs61976957 19970261 + 19970241 19970281 41 TTGGAAACCACGTTTGACACCAATGTCACCACGGAGATGAG TTGGAAACCACGTTTGACACCAATGTCACCACAGAGATGAG < 41bp 1 0.0720637966425521 1 0.0617231726646423 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:19970261 chr11:19970273 synonymous SNV . 0 33 hm5C_associated_SNPs_9006 0 0 0 0 1 Nucleus 1 0.500231644446334 1 0.999536711107332 hm5C_site_11454 DeepMRMD:1;iRNA_m5C:0.999536711107332 11455 chr11 20139705 20139705 1 + G A rs552719410 20139725 + 20139705 20139745 41 GGCAGCCAACTACTCCAGCCCCCAGAGCTATGACAGCGACT AGCAGCCAACTACTCCAGCCCCCAGAGCTATGACAGCGACT < 41bp 1 0.057441674510779 1 0.437919020652771 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20139725 chr11:20139705 synonymous SNV . 0 1 hm5C_associated_SNPs_9007 0 0 1 0 1 Nucleus 1 0.500231644349136 1 0.999536711301729 hm5C_site_11455 DeepMRMD:1;iRNA_m5C:0.999536711301729 11456 chr11 22304034 22304034 1 + A T rs116278349 22304049 + 22304029 22304069 41 AGAGGAGAAGGAAAGGAGGACAGATGAAAGTGACGGGAAAT AGAGGTGAAGGAAAGGAGGACAGATGAAAGTGACGGGAAAT < 41bp 1 0.617234310070007 1 0.697060883045197 experiment 0.765531379859987 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANO5 ENSG00000171714 UTR3 Human protein_coding chr11:22304049 chr11:22304034 . . 0 6 hm5C_associated_SNPs_9008 0 0 0 0 0 chromatin 1 0.500231643920131 0.605878233909606 0.999536712159738 hm5C_site_11456 DeepMRMD:0.605878233909606;iRNA_m5C:0.999536712159738 11457 chr11 25004818 25004818 1 + A C rs75747459 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCCCGATGCAGCGGCCAAAAGCAAGGTACCTA < 41bp 1 0.335341828786196 1 0.678691864013672 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004818 synonymous SNV . 0 13 hm5C_associated_SNPs_9009 0 0 0 0 1 exosome 1 0.500231643921092 0.642616271972656 0.999536712157815 hm5C_site_11457 DeepMRMD:0.642616271972656;iRNA_m5C:0.999536712157815 11458 chr11 31392362 31392362 1 + A G rs111299050 31392369 + 31392349 31392389 41 AGACCCATCTGCAAATATATCAGACCTAAAACAAAAATATC AGACCCATCTGCAGATATATCAGACCTAAAACAAAAATATC < 41bp 1 0.372017127336247 1 0.315642327070236 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC24 ENSG00000170946 CDS Human protein_coding chr11:31392369 chr11:31392362 nonsynonymous SNV 0.944 0 14 hm5C_associated_SNPs_9010 0 0 1 0 2 Cytosol 1 0.500231650363796 1 0.999536699272408 hm5C_site_11458 DeepMRMD:1;iRNA_m5C:0.999536699272408 11459 chr11 32118697 32118697 1 + G A rs201000684 32118684 + 32118664 32118704 41 TCTTTTTTTTTTTTTTTGTACTGCAGGAAGATTGTTGATCG TCTTTTTTTTTTTTTTTGTACTGCAGGAAGATTATTGATCG < 41bp 1 0.539817297943815 1 0.351494699716568 experiment 0.92036540411237 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCN1 ENSG00000049449 CDS Human protein_coding chr11:32118684 chr11:32118697 nonsynonymous SNV 0.981 2 34 hm5C_associated_SNPs_9013 0 0 1 0 1 Ribosome 1 0.500231643964698 1 0.999536712070603 hm5C_site_11459 DeepMRMD:1;iRNA_m5C:0.999536712070603 11460 chr11 32118697 32118697 1 + G A rs201000684 32118687 + 32118667 32118707 41 TTTTTTTTTTTTTTGTACTGCAGGAAGATTGTTGATCGAAT TTTTTTTTTTTTTTGTACTGCAGGAAGATTATTGATCGAAT < 41bp 1 0.555574110033017 1 0.398691177368164 experiment 0.888851779933965 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCN1 ENSG00000049449 CDS Human protein_coding chr11:32118687 chr11:32118697 nonsynonymous SNV 0.981 2 31 hm5C_associated_SNPs_9014 0 0 1 0 1 Ribosome 1 0.500231644992329 1 0.999536710015342 hm5C_site_11460 DeepMRMD:1;iRNA_m5C:0.999536710015342 11461 chr11 32605365 32605365 1 + C A rs183375892 32605383 + 32605363 32605403 41 CGCGGCCCAGTTCCCTTTTCCGGTCGGCGTGGTCTTGCGAG CGAGGCCCAGTTCCCTTTTCCGGTCGGCGTGGTCTTGCGAG < 41bp 1 0.689873293470147 1 0.87959611415863 experiment 0.620253413059705 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF3M ENSG00000149100 UTR5 Human protein_coding chr11:32605383 chr11:32605365 . . 0 3 hm5C_associated_SNPs_9015 0 0 1 0 0 Cytosol 1 0.50023164392107 0.24080777168274 0.99953671215786 hm5C_site_11461 DeepMRMD:0.24080777168274;iRNA_m5C:0.99953671215786 11462 chr11 32605400 32605400 1 + C A rs113415019 32605383 + 32605363 32605403 41 CGCGGCCCAGTTCCCTTTTCCGGTCGGCGTGGTCTTGCGAG CGCGGCCCAGTTCCCTTTTCCGGTCGGCGTGGTCTTGAGAG < 41bp 1 0.658802073592996 1 0.835012197494507 experiment 0.682395852814008 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF3M ENSG00000149100 UTR5 Human protein_coding chr11:32605383 chr11:32605400 . . 0 38 hm5C_associated_SNPs_9016 0 0 1 0 1 Cytosol 1 0.500231643921092 0.329975605010986 0.999536712157816 hm5C_site_11462 DeepMRMD:0.329975605010986;iRNA_m5C:0.999536712157816 11463 chr11 32875111 32875111 1 + T C rs200560709 32875131 + 32875111 32875151 41 TGATAGGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCA CGATAGGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCA < 41bp 1 0.473520089698181 1 0.10253432393074 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRRG4 ENSG00000135378 UTR3 Human protein_coding chr11:32875131 chr11:32875111 . . 0 1 hm5C_associated_SNPs_9018 0 0 0 0 0 Ribosome 1 0.500231642255016 1 0.999536715489968 hm5C_site_11463 DeepMRMD:1;iRNA_m5C:0.999536715489968 11464 chr11 32953904 32953904 1 + T C rs186308329 32953900 + 32953880 32953920 41 AGTCATCTTTATCCTGTAGCCCAATTGGAGATTCCACTCAG AGTCATCTTTATCCTGTAGCCCAACTGGAGATTCCACTCAG < 41bp 1 0.18279809189415 1 0.243668258190155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QSER1 ENSG00000060749 CDS Human protein_coding chr11:32953900 chr11:32953904 nonsynonymous SNV 0.574 1 25 hm5C_associated_SNPs_9020 0 0 1 0 1 Cytosol 1 0.500231643904571 1 0.999536712190858 hm5C_site_11464 DeepMRMD:1;iRNA_m5C:0.999536712190858 11465 chr11 32953904 32953904 1 + T C rs186308329 32953901 + 32953881 32953921 41 GTCATCTTTATCCTGTAGCCCAATTGGAGATTCCACTCAGG GTCATCTTTATCCTGTAGCCCAACTGGAGATTCCACTCAGG < 41bp 1 0.216392358796313 1 0.292880475521088 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QSER1 ENSG00000060749 CDS Human protein_coding chr11:32953901 chr11:32953904 nonsynonymous SNV 0.574 1 24 hm5C_associated_SNPs_9021 0 0 1 0 1 Cytosol 1 0.500231643921095 1 0.999536712157811 hm5C_site_11465 DeepMRMD:1;iRNA_m5C:0.999536712157811 11466 chr11 33098506 33098506 1 + G A rs183675901 33098524 + 33098504 33098544 41 TCGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTG TCATGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTG < 41bp 1 0.0870263075025 1 0.160256594419479 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LINC00294 ENSG00000176148 intronic Human protein_coding chr11:33098524 chr11:33098506 . . 0 3 hm5C_associated_SNPs_9022 0 0 0 0 0 unknown 1 0.500231643919816 1 0.999536712160368 hm5C_site_11466 DeepMRMD:1;iRNA_m5C:0.999536712160368 11467 chr11 33098506 33098506 1 + G A rs183675901 33098525 + 33098505 33098545 41 CGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTGT CATGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTGT < 41bp 1 0.29077043135439 1 0.0958996713161469 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LINC00294 ENSG00000176148 intronic Human protein_coding chr11:33098525 chr11:33098506 . . 0 2 hm5C_associated_SNPs_9023 0 0 0 0 0 unknown 1 0.500231643921117 1 0.999536712157767 hm5C_site_11467 DeepMRMD:1;iRNA_m5C:0.999536712157767 11468 chr11 33098521 33098521 1 + T C rs567225639 33098524 + 33098504 33098544 41 TCGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTG TCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTG < 41bp 1 0.0626033964976974 1 0.0853903293609619 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LINC00294 ENSG00000176148 intronic Human protein_coding chr11:33098524 chr11:33098521 . . 0 18 hm5C_associated_SNPs_9024 0 0 0 0 0 unknown 1 0.500231640480277 1 0.999536719039445 hm5C_site_11468 DeepMRMD:1;iRNA_m5C:0.999536719039445 11469 chr11 33098521 33098521 1 + T C rs567225639 33098525 + 33098505 33098545 41 CGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTGT CGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTGT < 41bp 1 0.274204420141806 1 0.0759887993335724 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LINC00294 ENSG00000176148 intronic Human protein_coding chr11:33098525 chr11:33098521 . . 0 17 hm5C_associated_SNPs_9025 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11469 DeepMRMD:1;iRNA_m5C:0.999536712157815 11470 chr11 33098521 33098521 1 + T C rs567225639 33098527 + 33098507 33098547 41 TGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTGTAG TGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTGTAG < 41bp 1 0.343634297800661 1 0.0876487791538239 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LINC00294 ENSG00000176148 intronic Human protein_coding chr11:33098527 chr11:33098521 . . 0 15 hm5C_associated_SNPs_9026 0 0 0 0 0 unknown 1 0.500231643921111 1 0.999536712157778 hm5C_site_11470 DeepMRMD:1;iRNA_m5C:0.999536712157778 11471 chr11 33098521 33098521 1 + T C rs567225639 33098528 + 33098508 33098548 41 GATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTGTAGG GATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTGTAGG < 41bp 1 0.362632769626244 1 0.726826548576355 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LINC00294 ENSG00000176148 intronic Human protein_coding chr11:33098528 chr11:33098521 . . 0 14 hm5C_associated_SNPs_9027 0 0 0 0 0 unknown 1 0.500233556840291 0.54634690284729 0.999532886319418 hm5C_site_11471 DeepMRMD:0.54634690284729;iRNA_m5C:0.999532886319418 11472 chr11 33098521 33098521 1 + T C rs567225639 33098529 + 33098509 33098549 41 ATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTGTAGGC ATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTGTAGGC < 41bp 1 0.566058310730363 1 0.497626483440399 experiment 0.867883378539275 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LINC00294 ENSG00000176148 intronic Human protein_coding chr11:33098529 chr11:33098521 . . 0 13 hm5C_associated_SNPs_9028 0 0 0 0 0 unknown 1 0.500231643922046 1 0.999536712155908 hm5C_site_11472 DeepMRMD:1;iRNA_m5C:0.999536712155908 11473 chr11 33693659 33693659 1 + A G rs529029183 33693655 + 33693635 33693675 41 AAACACAGAACACGGCTCCCCTACAGGAAAGGGATGGAGAC AAACACAGAACACGGCTCCCCTACGGGAAAGGGATGGAGAC < 41bp 1 0.54994005942399 1 0.527764678001404 experiment 0.90011988115202 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1549L ENSG00000255202 ncRNA_intronic Human antisense chr11:33693655 chr11:33693659 . . 0 25 hm5C_associated_SNPs_9030 0 0 0 0 0 exosome 1 0.500231643883529 0.944470643997192 0.999536712232943 hm5C_site_11473 DeepMRMD:0.944470643997192;iRNA_m5C:0.999536712232943 11474 chr11 34073265 34073265 1 + C T rs143034568 34073255 + 34073235 34073275 41 GGCTGCTGGCTGGCTAAGTCCCTCCCGCTCCCGGCTCTCGC GGCTGCTGGCTGGCTAAGTCCCTCCCGCTCTCGGCTCTCGC < 41bp 1 0.0806406898181267 1 0.140176951885223 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPRIN1 ENSG00000135387 UTR5 Human protein_coding chr11:34073255 chr11:34073265 . . 0 31 hm5C_associated_SNPs_9031 0 0 1 0 0 Cytosol 1 0.500231643920587 1 0.999536712158827 hm5C_site_11474 DeepMRMD:1;iRNA_m5C:0.999536712158827 11475 chr11 34121461 34121461 1 + T C rs114947458 34121453 + 34121433 34121473 41 AATTATGCATGGGTCCTAATCACACATATAAGGCTGGCTAC AATTATGCATGGGTCCTAATCACACATACAAGGCTGGCTAC < 41bp 1 0.632982433673223 1 0.738436639308929 experiment 0.734035132653555 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPRIN1 ENSG00000135387 UTR3 Human protein_coding chr11:34121453 chr11:34121461 . . 0 29 hm5C_associated_SNPs_9032 0 0 1 0 0 Cytosol 1 0.500231643921092 0.523126721382142 0.999536712157815 hm5C_site_11475 DeepMRMD:0.523126721382142;iRNA_m5C:0.999536712157815 11476 chr11 34121463 34121463 1 + A G rs141360049 34121453 + 34121433 34121473 41 AATTATGCATGGGTCCTAATCACACATATAAGGCTGGCTAC AATTATGCATGGGTCCTAATCACACATATAGGGCTGGCTAC < 41bp 1 0.568211398454901 1 0.369187593460083 experiment 0.863577203090198 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPRIN1 ENSG00000135387 UTR3 Human protein_coding chr11:34121453 chr11:34121463 . . 0 31 hm5C_associated_SNPs_9033 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11476 DeepMRMD:1;iRNA_m5C:0.999536712157815 11477 chr11 34167994 34167994 1 + C A rs145082237 34168014 + 34167994 34168034 41 CAGTCCAGGGCCCTCCTTTCCTATAAGTTCATATTTTGCTT AAGTCCAGGGCCCTCCTTTCCTATAAGTTCATATTTTGCTT < 41bp 1 0.54342989234913 1 0.322535514831543 experiment 0.913140215301739 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NAT10 ENSG00000135372 UTR3 Human protein_coding chr11:34168014 chr11:34167994 . . 0 1 hm5C_associated_SNPs_9034 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_11477 DeepMRMD:1;iRNA_m5C:0.999536712157815 11478 chr11 34938199 34938199 1 + C A rs3818401 34938184 + 34938164 34938204 41 CAGGCTGTGCTGCGGGCAGCCAGTGAGAAGGCCGTCAAGAT CAGGCTGTGCTGCGGGCAGCCAGTGAGAAGGCCGTAAAGAT < 41bp 1 0.698204240988063 1 0.737578511238098 experiment 0.603591518023874 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDHX ENSG00000110435 UTR5 Human protein_coding chr11:34938184 chr11:34938199 . . 0 36 hm5C_associated_SNPs_9036 0 0 1 0 0 Ribosome 1 0.500231643921092 0.524842977523804 0.999536712157815 hm5C_site_11478 DeepMRMD:0.524842977523804;iRNA_m5C:0.999536712157815 11479 chr11 34969150 34969150 1 + C T rs34582941 34969143 + 34969123 34969163 41 AAGTGATGATGGAATCTTGGCCAAAATCGTGGTAAGTTTTT AAGTGATGATGGAATCTTGGCCAAAATTGTGGTAAGTTTTT < 41bp 1 0.151676784901677 1 0.186306208372116 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969143 chr11:34969150 synonymous SNV . 0 28 hm5C_associated_SNPs_9037 2 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_11479 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 11480 chr11 35828455 35828455 1 + C T rs182988466 35828454 + 35828434 35828474 41 CATTTGTGAAAATTGTGGTGCCATGAATTAAGATGGATGAC CATTTGTGAAAATTGTGGTGCTATGAATTAAGATGGATGAC < 41bp 1 0.138426642744543 1 0.0937677919864655 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM44 ENSG00000166326 UTR3 Human protein_coding chr11:35828454 chr11:35828455 . . 0 22 hm5C_associated_SNPs_9040 0 0 1 1 0 Ribosome 1 0.500231825348765 1 0.99953634930247 hm5C_site_11480 DeepMRMD:1;iRNA_m5C:0.99953634930247 11481 chr11 43365468 43365468 1 + C T rs574754979 43365474 + 43365454 43365494 41 CTTCATTACCATTACCTCTACACTGCAGAAGAAGCAAAACT CTTCATTACCATTATCTCTACACTGCAGAAGAAGCAAAACT < 41bp 1 0.30687136673765 1 0.284277021884918 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control API5 ENSG00000254907 ncRNA_intronic Human antisense chr11:43365474 chr11:43365468 . . 0 15 hm5C_associated_SNPs_9042 0 0 0 1 0 Ribosome 1 0.50023164392109 1 0.999536712157821 hm5C_site_11481 DeepMRMD:1;iRNA_m5C:0.999536712157821 Lymphocyte counts 11482 chr11 43413479 43413479 1 + C T rs137942695 43413476 + 43413456 43413496 41 GGAGTATAGATGACATAGGTCACCTCATTCATGAAGGCCTA GGAGTATAGATGACATAGGTCACTTCATTCATGAAGGCCTA < 41bp 1 0.162461547545241 1 0.0401407480239868 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTC17 ENSG00000052841 CDS Human protein_coding chr11:43413476 chr11:43413479 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_9043 0 0 1 0 1 Nucleus 1 0.500231645286712 1 0.999536709426575 hm5C_site_11482 DeepMRMD:1;iRNA_m5C:0.999536709426575 Lymphocyte counts 11483 chr11 43465659 43465659 1 + T C rs76342567 43465648 + 43465628 43465668 41 TAAAGAAACCCAAAGGAGATCATAAGAAAACTCCTGGGAAA TAAAGAAACCCAAAGGAGATCATAAGAAAACCCCTGGGAAA < 41bp 1 0.380680691133159 1 0.319040656089783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTC17 ENSG00000052841 CDS Human protein_coding chr11:43465648 chr11:43465659 synonymous SNV . 0 32 hm5C_associated_SNPs_9044 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11483 DeepMRMD:1;iRNA_m5C:0.999536712157815 Lymphocyte counts 11484 chr11 43876829 43876829 1 + A G rs11037684 43876846 + 43876826 43876866 41 CAGATGCTCCAGCATATGCACGTTCACTGCAAAGCACCCTA CAGGTGCTCCAGCATATGCACGTTCACTGCAAAGCACCCTA < 41bp 1 0.107658175574866 1 0.0472550392150879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HSD17B12 ENSG00000246250 ncRNA_intronic Human antisense chr11:43876846 chr11:43876829 . . 0 4 hm5C_associated_SNPs_9046 0 0 1 1 0 Ribosome 1 0.500231645405905 1 0.99953670918819 hm5C_site_11484 DeepMRMD:1;iRNA_m5C:0.99953670918819 11485 chr11 43902620 43902620 1 + G A rs12799548 43902631 + 43902611 43902651 41 AAAGGAAGTGCCCTTATCCACGACCAAGCTCTTCCACCTGC AAAGGAAGTACCCTTATCCACGACCAAGCTCTTCCACCTGC < 41bp 1 0.420942085010278 1 0.0432881414890289 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALKBH3 ENSG00000166199 UTR5 Human protein_coding chr11:43902631 chr11:43902620 . . 0 10 hm5C_associated_SNPs_9047 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11485 DeepMRMD:1;iRNA_m5C:0.999536712157815 11486 chr11 43902650 43902650 1 + G A rs11555640 43902631 + 43902611 43902651 41 AAAGGAAGTGCCCTTATCCACGACCAAGCTCTTCCACCTGC AAAGGAAGTGCCCTTATCCACGACCAAGCTCTTCCACCTAC < 41bp 1 0.481953842643265 1 0.0449461936950684 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALKBH3 ENSG00000166199 UTR5 Human protein_coding chr11:43902631 chr11:43902650 . . 0 40 hm5C_associated_SNPs_9048 0 0 0 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11486 DeepMRMD:1;iRNA_m5C:0.999536712157815 11487 chr11 43941637 43941637 1 + C G rs36088299 43941621 + 43941601 43941641 41 AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGCTGCT AACCTTCCACTGAGAAGCCACTTCAAGAGGCTGGTGGTGCT < 41bp 1 0.376154537477593 1 0.81612503528595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3-AS1 ENSG00000244926 ncRNA_intronic Human antisense chr11:43941621 chr11:43941637 . . 0 37 hm5C_associated_SNPs_9049 0 0 1 9 0 unknown 1 0.500231632906072 0.3677499294281 0.999536734187856 hm5C_site_11487 DeepMRMD:0.3677499294281;iRNA_m5C:0.999536734187856 11488 chr11 43964842 43964842 1 + G C rs7077 43964852 + 43964832 43964872 41 GCCCGCGGGGGGGACGCGCGCGTCCGCGGTCCGCGCGGGGA GCCCGCGGGGCGGACGCGCGCGTCCGCGGTCCGCGCGGGGA < 41bp 1 0.615043938376506 1 0.196108669042587 experiment 0.769912123246989 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C11orf96 ENSG00000187479 CDS Human protein_coding chr11:43964852 chr11:43964842 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_9050 0 0 0 0 0 exosome 1 0.500231643941045 1 0.999536712117911 hm5C_site_11488 DeepMRMD:1;iRNA_m5C:0.999536712117911 11489 chr11 44129386 44129386 1 + A G rs4755779 44129385 + 44129365 44129405 41 CTGGGCCTCATTGCCACTGGCATGTTTCAGTTTTGGCCCCA CTGGGCCTCATTGCCACTGGCGTGTTTCAGTTTTGGCCCCA < 41bp 1 0.332979693093246 1 0.104183822870255 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129385 chr11:44129386 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_9051 2 0 1 0 0 Endoplasmic reticulum 1 0.500231643921641 1 0.999536712156717 hm5C_site_11489 DeepMRMD:1;iRNA_m5C:0.999536712156717 not specified not specified 11490 chr11 44129386 44129386 1 + A G rs4755779 44129403 + 44129383 44129423 41 GGCATGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAA GGCGTGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAA < 41bp 1 0.04162201199823 1 0.0186623334884644 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129403 chr11:44129386 nonsynonymous SNV 0.999 0 4 hm5C_associated_SNPs_9052 2 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11490 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 11491 chr11 44129386 44129386 1 + A G rs4755779 44129404 + 44129384 44129424 41 GCATGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAAT GCGTGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAAT < 41bp 1 0.0320676131461875 1 0.0537253022193909 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129404 chr11:44129386 nonsynonymous SNV 0.999 0 3 hm5C_associated_SNPs_9053 2 0 1 0 0 Endoplasmic reticulum 1 0.500428246514794 1 0.999143506970412 hm5C_site_11491 DeepMRMD:1;iRNA_m5C:0.999143506970412 not specified not specified 11492 chr11 44129412 44129412 1 + C G rs138982530 44129403 + 44129383 44129423 41 GGCATGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAA GGCATGTTTCAGTTTTGGCCCCATTCTATGGAGTCCTCAAA < 41bp 1 0.0385329304264135 1 0.0270883738994598 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129403 chr11:44129412 nonsynonymous SNV 0.998 3 30 hm5C_associated_SNPs_9054 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_11492 DeepMRMD:1;iRNA_m5C:0.999536712157814 11493 chr11 44129412 44129412 1 + C G rs138982530 44129404 + 44129384 44129424 41 GCATGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAAT GCATGTTTCAGTTTTGGCCCCATTCTATGGAGTCCTCAAAT < 41bp 1 0.0338248430874376 1 0.0938252210617065 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129404 chr11:44129412 nonsynonymous SNV 0.998 3 29 hm5C_associated_SNPs_9055 0 0 1 0 0 Endoplasmic reticulum 1 0.500232041832812 1 0.999535916334376 hm5C_site_11493 DeepMRMD:1;iRNA_m5C:0.999535916334376 11494 chr11 44129508 44129508 1 + T C rs559280035 44129509 + 44129489 44129529 41 CCATCCCAGAGCGGGGGGATCTCAGTTGCAGAATGCACACG CCATCCCAGAGCGGGGGGACCTCAGTTGCAGAATGCACACG < 41bp 1 0.633275802383634 1 0.434960931539536 experiment 0.733448395232732 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129509 chr11:44129508 synonymous SNV . 0 20 hm5C_associated_SNPs_9056 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11494 DeepMRMD:1;iRNA_m5C:0.999536712157815 11495 chr11 44129526 44129526 1 + C T rs35455466 44129509 + 44129489 44129529 41 CCATCCCAGAGCGGGGGGATCTCAGTTGCAGAATGCACACG CCATCCCAGAGCGGGGGGATCTCAGTTGCAGAATGCATACG < 41bp 1 0.660766781488291 1 0.513108372688293 experiment 0.678466437023418 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129509 chr11:44129526 synonymous SNV . 0 38 hm5C_associated_SNPs_9057 2 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.973783254623414 0.999536712157815 hm5C_site_11495 DeepMRMD:0.973783254623414;iRNA_m5C:0.999536712157815 Hereditary Multiple Osteochondromatosis Hereditary Multiple Osteochondromatosis 11496 chr11 44129781 44129781 1 + G A rs148121594 44129787 + 44129767 44129807 41 GAGACAGCACAAGCGATGGCCCAGCTCTCTAGGTATCTCAC GAGACAGCACAAGCAATGGCCCAGCTCTCTAGGTATCTCAC < 41bp 1 0.0786540693123574 1 0.0805185437202454 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129787 chr11:44129781 synonymous SNV . 0 15 hm5C_associated_SNPs_9058 0 0 1 0 1 Endoplasmic reticulum 1 0.500240544989931 1 0.999518910020137 hm5C_site_11496 DeepMRMD:1;iRNA_m5C:0.999518910020137 11497 chr11 44266131 44266131 1 + T C rs567830977 44266132 + 44266112 44266152 41 ATTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAGTTCCATG ATTTAAATCCAGCTGAGGCCCCCTTTGTTTTCAGTTCCATG < 41bp 1 0.0607933697093264 1 0.0578004419803619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EXT2 ENSG00000151348 UTR3 Human protein_coding chr11:44266132 chr11:44266131 . . 0 20 hm5C_associated_SNPs_9059 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921061 1 0.999536712157877 hm5C_site_11497 DeepMRMD:1;iRNA_m5C:0.999536712157877 11498 chr11 44266131 44266131 1 + T C rs567830977 44266133 + 44266113 44266153 41 TTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAGTTCCATGT TTTAAATCCAGCTGAGGCCCCCTTTGTTTTCAGTTCCATGT < 41bp 1 0.0394393985070606 1 0.039687842130661 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EXT2 ENSG00000151348 UTR3 Human protein_coding chr11:44266133 chr11:44266131 . . 0 19 hm5C_associated_SNPs_9060 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644029685 1 0.999536711940631 hm5C_site_11498 DeepMRMD:1;iRNA_m5C:0.999536711940631 11499 chr11 44639774 44639774 1 + C T rs541161774 44639783 + 44639763 44639803 41 CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGCGA CTCATGAATCGTCCTGAGGTCACCTACCCCTGTTCCTGCGA < 41bp 1 0.345642001063241 1 0.102156907320023 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44639783 chr11:44639774 synonymous SNV . 0 12 hm5C_associated_SNPs_9061 0 0 1 0 1 Nucleus 1 0.50023164377678 1 0.999536712446439 hm5C_site_11499 DeepMRMD:1;iRNA_m5C:0.999536712446439 11500 chr11 44639801 44639801 1 + C A rs139816598 44639783 + 44639763 44639803 41 CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGCGA CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGAGA < 41bp 1 0.321519406215583 1 0.0883147120475769 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44639783 chr11:44639801 stopgain 0.396 1 39 hm5C_associated_SNPs_9062 0 0 1 0 1 Nucleus 1 0.500231572968111 1 0.999536854063778 hm5C_site_11500 DeepMRMD:1;iRNA_m5C:0.999536854063778 11501 chr11 45235425 45235425 1 + G A rs184576818 45235442 + 45235422 45235462 41 TGGGAAGAGGAGGCAGGGGGCAGGTCTTGCCCCTTGCCAGG TGGAAAGAGGAGGCAGGGGGCAGGTCTTGCCCCTTGCCAGG < 41bp 1 0.527629016437379 1 0.695772171020508 experiment 0.944741967125243 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRDM11 ENSG00000019485 UTR3 Human protein_coding chr11:45235442 chr11:45235425 . . 0 4 hm5C_associated_SNPs_9063 0 0 0 0 0 cytosol 1 0.500231643921092 0.608455657958984 0.999536712157815 hm5C_site_11501 DeepMRMD:0.608455657958984;iRNA_m5C:0.999536712157815 11502 chr11 45235433 45235433 1 + G C rs3781704 45235442 + 45235422 45235462 41 TGGGAAGAGGAGGCAGGGGGCAGGTCTTGCCCCTTGCCAGG TGGGAAGAGGACGCAGGGGGCAGGTCTTGCCCCTTGCCAGG < 41bp 1 0.517918002179485 1 0.664949297904968 experiment 0.964163995641029 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRDM11 ENSG00000019485 UTR3 Human protein_coding chr11:45235442 chr11:45235433 . . 0 12 hm5C_associated_SNPs_9064 0 0 0 0 0 cytosol 1 0.500231643921092 0.670101404190064 0.999536712157815 hm5C_site_11502 DeepMRMD:0.670101404190064;iRNA_m5C:0.999536712157815 11503 chr11 45235433 45235433 1 + G C rs3781704 45235451 + 45235431 45235471 41 GAGGCAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCC GACGCAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCC < 41bp 1 0.143298657612922 1 0.0885405838489532 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRDM11 ENSG00000019485 UTR3 Human protein_coding chr11:45235451 chr11:45235433 . . 0 3 hm5C_associated_SNPs_9065 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11503 DeepMRMD:1;iRNA_m5C:0.999536712157815 11504 chr11 45235433 45235433 1 + G C rs3781704 45235452 + 45235432 45235472 41 AGGCAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCCC ACGCAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCCC < 41bp 1 0.0916126107843481 1 0.132308274507523 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRDM11 ENSG00000019485 UTR3 Human protein_coding chr11:45235452 chr11:45235433 . . 0 2 hm5C_associated_SNPs_9066 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11504 DeepMRMD:1;iRNA_m5C:0.999536712157815 11505 chr11 45235433 45235433 1 + G C rs3781704 45235453 + 45235433 45235473 41 GGCAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCCCT CGCAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCCCT < 41bp 1 0.0677520597223967 1 0.27666711807251 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRDM11 ENSG00000019485 UTR3 Human protein_coding chr11:45235453 chr11:45235433 . . 0 1 hm5C_associated_SNPs_9067 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11505 DeepMRMD:1;iRNA_m5C:0.999536712157815 11506 chr11 45235434 45235434 1 + G A rs58590291 45235442 + 45235422 45235462 41 TGGGAAGAGGAGGCAGGGGGCAGGTCTTGCCCCTTGCCAGG TGGGAAGAGGAGACAGGGGGCAGGTCTTGCCCCTTGCCAGG < 41bp 1 0.457991114044705 1 0.554275572299957 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRDM11 ENSG00000019485 UTR3 Human protein_coding chr11:45235442 chr11:45235434 . . 0 13 hm5C_associated_SNPs_9068 0 0 0 0 0 cytosol 1 0.500231643921093 0.891448855400086 0.999536712157815 hm5C_site_11506 DeepMRMD:0.891448855400086;iRNA_m5C:0.999536712157815 11507 chr11 45235434 45235434 1 + G A rs58590291 45235451 + 45235431 45235471 41 GAGGCAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCC GAGACAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCC < 41bp 1 0.147156123815709 1 0.0927774310112 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRDM11 ENSG00000019485 UTR3 Human protein_coding chr11:45235451 chr11:45235434 . . 0 4 hm5C_associated_SNPs_9069 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11507 DeepMRMD:1;iRNA_m5C:0.999536712157815 11508 chr11 45235434 45235434 1 + G A rs58590291 45235452 + 45235432 45235472 41 AGGCAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCCC AGACAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCCC < 41bp 1 0.0828967208068761 1 0.115218073129654 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRDM11 ENSG00000019485 UTR3 Human protein_coding chr11:45235452 chr11:45235434 . . 0 3 hm5C_associated_SNPs_9070 0 0 0 0 0 cytosol 1 0.500231643921134 1 0.999536712157733 hm5C_site_11508 DeepMRMD:1;iRNA_m5C:0.999536712157733 11509 chr11 45235434 45235434 1 + G A rs58590291 45235453 + 45235433 45235473 41 GGCAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCCCT GACAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCCCT < 41bp 1 0.068694535606342 1 0.254316806793213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRDM11 ENSG00000019485 UTR3 Human protein_coding chr11:45235453 chr11:45235434 . . 0 2 hm5C_associated_SNPs_9071 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11509 DeepMRMD:1;iRNA_m5C:0.999536712157815 11510 chr11 45235434 45235434 1 + G A rs58590291 45235454 + 45235434 45235474 41 GCAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCCCTT ACAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCCCTT < 41bp 1 0.127063657901869 1 0.0740024149417877 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRDM11 ENSG00000019485 UTR3 Human protein_coding chr11:45235454 chr11:45235434 . . 0 1 hm5C_associated_SNPs_9072 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11510 DeepMRMD:1;iRNA_m5C:0.999536712157815 11511 chr11 45832935 45832935 1 + G A rs1139266 45832915 + 45832895 45832935 41 GGCACCCTGGATGGCCCGGCCCCGGGGCCCGTACACAGGCG GGCACCCTGGATGGCCCGGCCCCGGGGCCCGTACACAGGCA < 41bp 1 0.638672520418195 1 0.733876466751099 experiment 0.722654959163609 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC35C1 ENSG00000181830 UTR3 Human protein_coding chr11:45832915 chr11:45832935 . . 0 41 hm5C_associated_SNPs_9073 2 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.532247066497802 0.999536712157815 hm5C_site_11511 DeepMRMD:0.532247066497802;iRNA_m5C:0.999536712157815 not specified not specified 11512 chr11 45833077 45833077 1 + A C rs140259547 45833079 + 45833059 45833099 41 TATCAGAAAGTTGAAGGAACCAGTGTTTACAAGTAATACCA TATCAGAAAGTTGAAGGACCCAGTGTTTACAAGTAATACCA < 41bp 1 0.401328020627443 1 0.340782105922699 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC35C1 ENSG00000181830 UTR3 Human protein_coding chr11:45833079 chr11:45833077 . . 0 19 hm5C_associated_SNPs_9075 0 0 1 7 0 Endoplasmic reticulum 1 0.500231643921572 1 0.999536712156856 hm5C_site_11512 DeepMRMD:1;iRNA_m5C:0.999536712156856 11513 chr11 45923988 45923988 1 + G A rs370741115 45923984 + 45923964 45924004 41 GAGCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCG GAGCTGCCCCCCCAGAGCGGCCCCACCCCCACCACAGATCG < 41bp 1 0.124247690245729 1 0.155689805746078 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923984 chr11:45923988 nonsynonymous SNV 0.301 0 25 hm5C_associated_SNPs_9076 0 0 1 0 1 Endoplasmic reticulum 1 0.500231651781572 1 0.999536696436855 hm5C_site_11513 DeepMRMD:1;iRNA_m5C:0.999536696436855 11514 chr11 45923988 45923988 1 + G A rs370741115 45923985 + 45923965 45924005 41 AGCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGA AGCTGCCCCCCCAGAGCGGCCCCACCCCCACCACAGATCGA < 41bp 1 0.0275335579726118 1 0.0936552584171295 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923985 chr11:45923988 nonsynonymous SNV 0.301 0 24 hm5C_associated_SNPs_9077 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11514 DeepMRMD:1;iRNA_m5C:0.999536712157815 11515 chr11 45923988 45923988 1 + G A rs370741115 45923986 + 45923966 45924006 41 GCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAG GCTGCCCCCCCAGAGCGGCCCCACCCCCACCACAGATCGAG < 41bp 1 0.0298230280996193 1 0.0644825100898743 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923986 chr11:45923988 nonsynonymous SNV 0.301 0 23 hm5C_associated_SNPs_9078 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644272649 1 0.999536711454702 hm5C_site_11515 DeepMRMD:1;iRNA_m5C:0.999536711454702 11516 chr11 45923988 45923988 1 + G A rs370741115 45923987 + 45923967 45924007 41 CTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGG CTGCCCCCCCAGAGCGGCCCCACCCCCACCACAGATCGAGG < 41bp 1 0.0995643710836397 1 0.181822180747986 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923987 chr11:45923988 nonsynonymous SNV 0.301 0 22 hm5C_associated_SNPs_9079 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11516 DeepMRMD:1;iRNA_m5C:0.999536712157815 11517 chr11 45923988 45923988 1 + G A rs370741115 45923989 + 45923969 45924009 41 GCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCA GCCCCCCCAGAGCGGCCCCACCCCCACCACAGATCGAGGCA < 41bp 1 0.0803649250484551 1 0.164943665266037 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923989 chr11:45923988 nonsynonymous SNV 0.301 0 20 hm5C_associated_SNPs_9080 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_11517 DeepMRMD:1;iRNA_m5C:0.999536712157815 11518 chr11 45923988 45923988 1 + G A rs370741115 45923990 + 45923970 45924010 41 CCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCAC CCCCCCCAGAGCGGCCCCACCCCCACCACAGATCGAGGCAC < 41bp 1 0.382599992555471 1 0.49979904294014 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923990 chr11:45923988 nonsynonymous SNV 0.301 0 19 hm5C_associated_SNPs_9081 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643944792 1 0.999536712110416 hm5C_site_11518 DeepMRMD:1;iRNA_m5C:0.999536712110416 11519 chr11 45923988 45923988 1 + G A rs370741115 45923991 + 45923971 45924011 41 CCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCACC CCCCCCAGAGCGGCCCCACCCCCACCACAGATCGAGGCACC < 41bp 1 0.107141198355514 1 0.152163207530975 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923991 chr11:45923988 nonsynonymous SNV 0.301 0 18 hm5C_associated_SNPs_9082 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11519 DeepMRMD:1;iRNA_m5C:0.999536712157815 11520 chr11 45923988 45923988 1 + G A rs370741115 45923992 + 45923972 45924012 41 CCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCACCT CCCCCAGAGCGGCCCCACCCCCACCACAGATCGAGGCACCT < 41bp 1 0.0536628146036375 1 0.199344456195831 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923992 chr11:45923988 nonsynonymous SNV 0.301 0 17 hm5C_associated_SNPs_9083 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921052 1 0.999536712157897 hm5C_site_11520 DeepMRMD:1;iRNA_m5C:0.999536712157897 11521 chr11 45924662 45924662 1 + G A rs148883443 45924677 + 45924657 45924697 41 TCCACGCCTGATGAACCCGACGTCCATTTCTCCAAGAAATT TCCACACCTGATGAACCCGACGTCCATTTCTCCAAGAAATT < 41bp 1 0.0282604120215251 1 0.0573947429656982 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924677 chr11:45924662 synonymous SNV . 0 6 hm5C_associated_SNPs_9085 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644148489 1 0.999536711703021 hm5C_site_11521 DeepMRMD:1;iRNA_m5C:0.999536711703021 11522 chr11 46299287 46299287 1 + G A rs533803208 46299293 + 46299273 46299313 41 GCCACCCAGTCTCGGGGGAGCACTTAGCTCCCCCGCCCCGG GCCACCCAGTCTCGAGGGAGCACTTAGCTCCCCCGCCCCGG < 41bp 1 0.291458898218948 1 0.0510679483413696 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299293 chr11:46299287 . . 0 15 hm5C_associated_SNPs_9086 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921098 1 0.999536712157803 hm5C_site_11522 DeepMRMD:1;iRNA_m5C:0.999536712157803 11523 chr11 46299287 46299287 1 + G A rs533803208 46299300 + 46299280 46299320 41 AGTCTCGGGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCAC AGTCTCGAGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCAC < 41bp 1 0.435397882201858 1 0.798872470855713 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299300 chr11:46299287 . . 0 8 hm5C_associated_SNPs_9087 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921279 0.402255058288574 0.999536712157442 hm5C_site_11523 DeepMRMD:0.402255058288574;iRNA_m5C:0.999536712157442 11524 chr11 46299287 46299287 1 + G A rs533803208 46299302 + 46299282 46299322 41 TCTCGGGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCC TCTCGAGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCC < 41bp 1 0.352839808391227 1 0.199521541595459 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299302 chr11:46299287 . . 0 6 hm5C_associated_SNPs_9088 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920278 1 0.999536712159444 hm5C_site_11524 DeepMRMD:1;iRNA_m5C:0.999536712159444 11525 chr11 46299287 46299287 1 + G A rs533803208 46299303 + 46299283 46299323 41 CTCGGGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCCT CTCGAGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCCT < 41bp 1 0.304752996032582 1 0.267742514610291 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299303 chr11:46299287 . . 0 5 hm5C_associated_SNPs_9089 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11525 DeepMRMD:1;iRNA_m5C:0.999536712157815 11526 chr11 46299287 46299287 1 + G A rs533803208 46299304 + 46299284 46299324 41 TCGGGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCCTG TCGAGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCCTG < 41bp 1 0.449996396516885 1 0.21250969171524 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299304 chr11:46299287 . . 0 4 hm5C_associated_SNPs_9090 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643848912 1 0.999536712302176 hm5C_site_11526 DeepMRMD:1;iRNA_m5C:0.999536712302176 11527 chr11 46299287 46299287 1 + G A rs533803208 46299305 + 46299285 46299325 41 CGGGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCCTGT CGAGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCCTGT < 41bp 1 0.142778493497501 1 0.0851991772651672 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299305 chr11:46299287 . . 0 3 hm5C_associated_SNPs_9091 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157817 hm5C_site_11527 DeepMRMD:1;iRNA_m5C:0.999536712157817 11528 chr11 46299287 46299287 1 + G A rs533803208 46299306 + 46299286 46299326 41 GGGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCCTGTC GAGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCCTGTC < 41bp 1 0.265558228016691 1 0.198799133300781 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299306 chr11:46299287 . . 0 2 hm5C_associated_SNPs_9092 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643795619 1 0.999536712408762 hm5C_site_11528 DeepMRMD:1;iRNA_m5C:0.999536712408762 11529 chr11 46299309 46299309 1 + C G rs11038846 46299293 + 46299273 46299313 41 GCCACCCAGTCTCGGGGGAGCACTTAGCTCCCCCGCCCCGG GCCACCCAGTCTCGGGGGAGCACTTAGCTCCCCCGCGCCGG < 41bp 1 0.295577966727853 1 0.143568694591522 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299293 chr11:46299309 . . 0 37 hm5C_associated_SNPs_9093 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920817 1 0.999536712158367 hm5C_site_11529 DeepMRMD:1;iRNA_m5C:0.999536712158367 11530 chr11 46299309 46299309 1 + C G rs11038846 46299300 + 46299280 46299320 41 AGTCTCGGGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCAC AGTCTCGGGGGAGCACTTAGCTCCCCCGCGCCGGCTCCCAC < 41bp 1 0.491401895273581 1 0.640286564826965 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299300 chr11:46299309 . . 0 30 hm5C_associated_SNPs_9094 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.71942687034607 0.999536712157815 hm5C_site_11530 DeepMRMD:0.71942687034607;iRNA_m5C:0.999536712157815 11531 chr11 46299309 46299309 1 + C G rs11038846 46299302 + 46299282 46299322 41 TCTCGGGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCC TCTCGGGGGAGCACTTAGCTCCCCCGCGCCGGCTCCCACCC < 41bp 1 0.370306158632796 1 0.184934765100479 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299302 chr11:46299309 . . 0 28 hm5C_associated_SNPs_9095 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_11531 DeepMRMD:1;iRNA_m5C:0.999536712157815 11532 chr11 46299309 46299309 1 + C G rs11038846 46299303 + 46299283 46299323 41 CTCGGGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCCT CTCGGGGGAGCACTTAGCTCCCCCGCGCCGGCTCCCACCCT < 41bp 1 0.340981319604765 1 0.405725479125977 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299303 chr11:46299309 . . 0 27 hm5C_associated_SNPs_9096 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157813 hm5C_site_11532 DeepMRMD:1;iRNA_m5C:0.999536712157813 11533 chr11 46299309 46299309 1 + C G rs11038846 46299304 + 46299284 46299324 41 TCGGGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCCTG TCGGGGGAGCACTTAGCTCCCCCGCGCCGGCTCCCACCCTG < 41bp 1 0.568363627411812 1 0.316898554563522 experiment 0.863272745176376 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299304 chr11:46299309 . . 0 26 hm5C_associated_SNPs_9097 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11533 DeepMRMD:1;iRNA_m5C:0.999536712157815 11534 chr11 46299309 46299309 1 + C G rs11038846 46299305 + 46299285 46299325 41 CGGGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCCTGT CGGGGGAGCACTTAGCTCCCCCGCGCCGGCTCCCACCCTGT < 41bp 1 0.367426392870213 1 0.174843847751617 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299305 chr11:46299309 . . 0 25 hm5C_associated_SNPs_9098 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11534 DeepMRMD:1;iRNA_m5C:0.999536712157815 11535 chr11 46299309 46299309 1 + C G rs11038846 46299306 + 46299286 46299326 41 GGGGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCCTGTC GGGGGAGCACTTAGCTCCCCCGCGCCGGCTCCCACCCTGTC < 41bp 1 0.474474989463396 1 0.443713456392288 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299306 chr11:46299309 . . 0 24 hm5C_associated_SNPs_9099 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11535 DeepMRMD:1;iRNA_m5C:0.999536712157815 11536 chr11 46388375 46388375 1 + G A rs201033672 46388380 + 46388360 46388400 41 GGCGCCTCAGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGC GGCGCCTCAGCCAGCAGCGGCCCTCAGGCCAGCACCCTGGC < 41bp 1 0.0278879212441658 1 0.0596424043178558 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388380 chr11:46388375 nonsynonymous SNV 0.832 0 16 hm5C_associated_SNPs_9102 0 0 0 0 0 Ribosome 1 0.500231643930881 1 0.999536712138239 hm5C_site_11536 DeepMRMD:1;iRNA_m5C:0.999536712138239 11537 chr11 46388375 46388375 1 + G A rs201033672 46388381 + 46388361 46388401 41 GCGCCTCAGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCC GCGCCTCAGCCAGCAGCGGCCCTCAGGCCAGCACCCTGGCC < 41bp 1 0.199669871792794 1 0.121575236320496 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388381 chr11:46388375 nonsynonymous SNV 0.832 0 15 hm5C_associated_SNPs_9103 0 0 0 0 0 Ribosome 1 0.500231643944368 1 0.999536712111265 hm5C_site_11537 DeepMRMD:1;iRNA_m5C:0.999536712111265 11538 chr11 46388375 46388375 1 + G A rs201033672 46388382 + 46388362 46388402 41 CGCCTCAGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCCC CGCCTCAGCCAGCAGCGGCCCTCAGGCCAGCACCCTGGCCC < 41bp 1 0.451562818213203 1 0.259414076805115 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388382 chr11:46388375 nonsynonymous SNV 0.832 0 14 hm5C_associated_SNPs_9104 0 0 0 0 0 Ribosome 1 0.50023164373036 1 0.999536712539281 hm5C_site_11538 DeepMRMD:1;iRNA_m5C:0.999536712539281 11539 chr11 46388375 46388375 1 + G A rs201033672 46388384 + 46388364 46388404 41 CCTCAGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCCCTG CCTCAGCCAGCAGCGGCCCTCAGGCCAGCACCCTGGCCCTG < 41bp 1 0.67020554573088 1 0.944555938243866 experiment 0.65958890853824 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388384 chr11:46388375 nonsynonymous SNV 0.832 0 12 hm5C_associated_SNPs_9105 0 0 0 0 0 Ribosome 1 0.500231643921092 0.110888123512268 0.999536712157815 hm5C_site_11539 DeepMRMD:0.110888123512268;iRNA_m5C:0.999536712157815 11540 chr11 46388375 46388375 1 + G A rs201033672 46388388 + 46388368 46388408 41 AGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCCCTGGGGG AGCCAGCAGCGGCCCTCAGGCCAGCACCCTGGCCCTGGGGG < 41bp 1 0.194084893671431 1 0.65046489238739 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388388 chr11:46388375 nonsynonymous SNV 0.832 0 8 hm5C_associated_SNPs_9106 0 0 0 0 0 Ribosome 1 0.50023164390366 0.69907021522522 0.999536712192679 hm5C_site_11540 DeepMRMD:0.69907021522522;iRNA_m5C:0.999536712192679 11541 chr11 46388401 46388401 1 + C A rs544146483 46388381 + 46388361 46388401 41 GCGCCTCAGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCC GCGCCTCAGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCA < 41bp 1 0.196590871747528 1 0.179540574550629 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388381 chr11:46388401 nonsynonymous SNV 0.248 0 41 hm5C_associated_SNPs_9107 0 0 0 0 0 Ribosome 1 0.500231643842483 1 0.999536712315034 hm5C_site_11541 DeepMRMD:1;iRNA_m5C:0.999536712315034 11542 chr11 46388401 46388401 1 + C A rs544146483 46388382 + 46388362 46388402 41 CGCCTCAGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCCC CGCCTCAGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCAC < 41bp 1 0.528042162069425 1 0.45847299695015 experiment 0.94391567586115 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388382 chr11:46388401 nonsynonymous SNV 0.248 0 40 hm5C_associated_SNPs_9108 0 0 0 0 0 Ribosome 1 0.500231643934005 1 0.99953671213199 hm5C_site_11542 DeepMRMD:1;iRNA_m5C:0.99953671213199 11543 chr11 46388401 46388401 1 + C A rs544146483 46388388 + 46388368 46388408 41 AGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCCCTGGGGG AGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCACTGGGGG < 41bp 1 0.180453476784605 1 0.694941401481628 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388388 chr11:46388401 nonsynonymous SNV 0.248 0 34 hm5C_associated_SNPs_9110 0 0 0 0 0 Ribosome 1 0.500231530383439 0.610117197036744 0.999536939233123 hm5C_site_11543 DeepMRMD:0.610117197036744;iRNA_m5C:0.999536939233123 11544 chr11 46388401 46388401 1 + C A rs544146483 46388400 + 46388380 46388420 41 CCCTCAGGCCAGCACCCTGGCCCTGGGGGCCGAAGAGCCTC CCCTCAGGCCAGCACCCTGGCACTGGGGGCCGAAGAGCCTC < 41bp 1 0.509831608141828 1 0.0889425277709961 experiment 0.980336783716344 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388400 chr11:46388401 nonsynonymous SNV 0.248 0 22 hm5C_associated_SNPs_9111 0 0 0 0 0 Ribosome 1 0.500231643786048 1 0.999536712427903 hm5C_site_11544 DeepMRMD:1;iRNA_m5C:0.999536712427903 11545 chr11 46388401 46388401 1 + C A rs544146483 46388409 + 46388389 46388429 41 CAGCACCCTGGCCCTGGGGGCCGAAGAGCCTCAGGCACCAC CAGCACCCTGGCACTGGGGGCCGAAGAGCCTCAGGCACCAC < 41bp 1 0.312815260236576 1 0.362107664346695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388409 chr11:46388401 nonsynonymous SNV 0.248 0 13 hm5C_associated_SNPs_9112 0 0 0 0 0 Ribosome 1 0.500231643921535 1 0.99953671215693 hm5C_site_11545 DeepMRMD:1;iRNA_m5C:0.99953671215693 11546 chr11 46388401 46388401 1 + C A rs544146483 46388410 + 46388390 46388430 41 AGCACCCTGGCCCTGGGGGCCGAAGAGCCTCAGGCACCACC AGCACCCTGGCACTGGGGGCCGAAGAGCCTCAGGCACCACC < 41bp 1 0.335233483803985 1 0.647186756134033 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388410 chr11:46388401 nonsynonymous SNV 0.248 0 12 hm5C_associated_SNPs_9113 0 0 0 0 0 Ribosome 1 0.500231643921092 0.705626487731934 0.999536712157815 hm5C_site_11546 DeepMRMD:0.705626487731934;iRNA_m5C:0.999536712157815 11547 chr11 46403649 46403649 1 + G A rs20542 46403637 + 46403617 46403657 41 CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCT CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTACTGGCGCT < 41bp 1 0.0496096716644424 1 0.0764974057674408 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403637 chr11:46403649 synonymous SNV . 0 33 hm5C_associated_SNPs_9114 0 0 1 0 2 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_11547 DeepMRMD:1;iRNA_m5C:0.999536712157812 11548 chr11 46403649 46403649 1 + G A rs20542 46403638 + 46403618 46403658 41 GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTACTGGCGCTC < 41bp 1 0.461794085416625 1 0.344084352254868 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403638 chr11:46403649 synonymous SNV . 0 32 hm5C_associated_SNPs_9115 0 0 1 0 2 Ribosome 1 0.50023164395421 1 0.999536712091579 hm5C_site_11548 DeepMRMD:1;iRNA_m5C:0.999536712091579 11549 chr11 46403649 46403649 1 + G A rs20542 46403643 + 46403623 46403663 41 TTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC TTCCTCCTCCTCACCCTCCTCGCCCTACTGGCGCTCACCTC < 41bp 1 0.548404911802525 1 0.795686423778534 experiment 0.903190176394949 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403643 chr11:46403649 synonymous SNV . 0 27 hm5C_associated_SNPs_9116 0 0 1 0 2 Ribosome 1 0.500231643921092 0.408627152442932 0.999536712157815 hm5C_site_11549 DeepMRMD:0.408627152442932;iRNA_m5C:0.999536712157815 11550 chr11 46695365 46695365 1 + C T rs114393370 46695360 + 46695340 46695380 41 CTAGGTCTACTCCATTCCTCCTGGCCCACCTGGGGCATTCA CTAGGTCTACTCCATTCCTCCTGGCTCACCTGGGGCATTCA < 41bp 1 0.367850419339209 1 0.235980451107025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATG13 ENSG00000175224 UTR3 Human protein_coding chr11:46695360 chr11:46695365 . . 0 26 hm5C_associated_SNPs_9117 0 0 1 0 0 Ribosome 1 0.500231643922657 1 0.999536712154687 hm5C_site_11550 DeepMRMD:1;iRNA_m5C:0.999536712154687 11551 chr11 46695365 46695365 1 + C T rs114393370 46695364 + 46695344 46695384 41 GTCTACTCCATTCCTCCTGGCCCACCTGGGGCATTCACTGG GTCTACTCCATTCCTCCTGGCTCACCTGGGGCATTCACTGG < 41bp 1 0.162159063110499 1 0.0335747301578522 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATG13 ENSG00000175224 UTR3 Human protein_coding chr11:46695364 chr11:46695365 . . 0 22 hm5C_associated_SNPs_9118 0 0 1 0 0 Ribosome 1 0.500231643921126 1 0.999536712157749 hm5C_site_11551 DeepMRMD:1;iRNA_m5C:0.999536712157749 11552 chr11 47289864 47289864 1 + T C rs141966313 47289881 + 47289861 47289901 41 ATATGTGGAAGCCCTGCATGCCTACGTCTCCATCCACCATC ATACGTGGAAGCCCTGCATGCCTACGTCTCCATCCACCATC < 41bp 1 0.0781893185193252 1 0.01653653383255 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289881 chr11:47289864 synonymous SNV . 0 4 hm5C_associated_SNPs_9119 0 0 1 0 2 Ribosome 1 0.500231643922532 1 0.999536712154935 hm5C_site_11552 DeepMRMD:1;iRNA_m5C:0.999536712154935 11553 chr11 47289906 47289906 1 + T A rs78765998 47289902 + 47289882 47289922 41 CTACGTCTCCATCCACCATCCCCATGTGAGTCTCCCCATGG CTACGTCTCCATCCACCATCCCCAAGTGAGTCTCCCCATGG < 41bp 1 0.45759951663835 1 0.672565937042236 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289902 chr11:47289906 nonsynonymous SNV 0.713 1 25 hm5C_associated_SNPs_9120 0 0 1 0 2 Ribosome 1 0.500228280334526 0.654868125915528 0.999543439330947 hm5C_site_11553 DeepMRMD:0.654868125915528;iRNA_m5C:0.999543439330947 11554 chr11 47297564 47297564 1 + A G rs74698331 47297563 + 47297543 47297583 41 CTATCGATTGCTGCGCTCCCCAGTACCCGTCTCTGGGCAGA CTATCGATTGCTGCGCTCCCCGGTACCCGTCTCTGGGCAGA < 41bp 1 0.572518127398522 1 0.507054388523102 experiment 0.854963745202957 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MADD ENSG00000110514 CDS Human protein_coding chr11:47297563 chr11:47297564 synonymous SNV . 0 22 hm5C_associated_SNPs_9121 0 0 1 0 0 Nucleus 1 0.500231643921305 0.985891222953796 0.999536712157389 hm5C_site_11554 DeepMRMD:0.985891222953796;iRNA_m5C:0.999536712157389 11555 chr11 47437165 47437165 1 + G A rs536045005 47437171 + 47437151 47437191 41 CCCAGCCATGCTGTGGTTACCTCTCCTTGCCGCCCTGTCAC CCCAGCCATGCTGTAGTTACCTCTCCTTGCCGCCCTGTCAC < 41bp 1 0.315618961227067 1 0.0436452627182007 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC39A13 ENSG00000165915 UTR3 Human protein_coding chr11:47437171 chr11:47437165 . . 0 15 hm5C_associated_SNPs_9122 0 0 1 0 0 Endoplasmic reticulum 1 0.500231659057349 1 0.999536681885303 hm5C_site_11555 DeepMRMD:1;iRNA_m5C:0.999536681885303 11556 chr11 47437181 47437181 1 + C T rs529288093 47437171 + 47437151 47437191 41 CCCAGCCATGCTGTGGTTACCTCTCCTTGCCGCCCTGTCAC CCCAGCCATGCTGTGGTTACCTCTCCTTGCTGCCCTGTCAC < 41bp 1 0.280979697644951 1 0.0901876389980316 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC39A13 ENSG00000165915 UTR3 Human protein_coding chr11:47437171 chr11:47437181 . . 0 31 hm5C_associated_SNPs_9123 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920714 1 0.999536712158571 hm5C_site_11556 DeepMRMD:1;iRNA_m5C:0.999536712158571 11557 chr11 47587057 47587057 1 + T G rs183171144 47587063 + 47587043 47587083 41 CCGCCGTCACCCGGTGCGAGCCCGCGAGAGGCCTAGTGCAG CCGCCGTCACCCGGGGCGAGCCCGCGAGAGGCCTAGTGCAG < 41bp 1 0.480340897668116 1 0.330169916152954 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPMT1 ENSG00000110536;ENSG00000149187 UTR5 Human other chr11:47587063 chr11:47587057 . . 0 15 hm5C_associated_SNPs_9124 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_11557 DeepMRMD:1;iRNA_m5C:0.999536712157815 11558 chr11 47587057 47587057 1 + T G rs183171144 47587064 + 47587044 47587084 41 CGCCGTCACCCGGTGCGAGCCCGCGAGAGGCCTAGTGCAGC CGCCGTCACCCGGGGCGAGCCCGCGAGAGGCCTAGTGCAGC < 41bp 1 0.61029470445802 1 0.551515161991119 experiment 0.77941059108396 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPMT1 ENSG00000110536;ENSG00000149187 UTR5 Human other chr11:47587064 chr11:47587057 . . 0 14 hm5C_associated_SNPs_9125 0 0 1 0 0 Ribosome 1 0.500231644445958 0.896969676017762 0.999536711108084 hm5C_site_11558 DeepMRMD:0.896969676017762;iRNA_m5C:0.999536711108084 11559 chr11 47587062 47587062 1 + G A rs11039300 47587063 + 47587043 47587083 41 CCGCCGTCACCCGGTGCGAGCCCGCGAGAGGCCTAGTGCAG CCGCCGTCACCCGGTGCGAACCCGCGAGAGGCCTAGTGCAG < 41bp 1 0.480622096269374 1 0.275105863809586 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPMT1 ENSG00000110536;ENSG00000149187 UTR5 Human other chr11:47587063 chr11:47587062 . . 0 20 hm5C_associated_SNPs_9126 0 0 0 0 0 Ribosome 1 0.50023164364979 1 0.999536712700419 hm5C_site_11559 DeepMRMD:1;iRNA_m5C:0.999536712700419 11560 chr11 47587062 47587062 1 + G A rs11039300 47587064 + 47587044 47587084 41 CGCCGTCACCCGGTGCGAGCCCGCGAGAGGCCTAGTGCAGC CGCCGTCACCCGGTGCGAACCCGCGAGAGGCCTAGTGCAGC < 41bp 1 0.618934638273307 1 0.375899255275726 experiment 0.762130723453385 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPMT1 ENSG00000110536;ENSG00000149187 UTR5 Human other chr11:47587064 chr11:47587062 . . 0 19 hm5C_associated_SNPs_9127 0 0 0 0 0 Ribosome 1 0.500231648041031 1 0.999536703917937 hm5C_site_11560 DeepMRMD:1;iRNA_m5C:0.999536703917937 11561 chr11 47587147 47587147 1 + C T rs188981991 47587131 + 47587111 47587151 41 GCTCTTCTCGCGGGTCCGGACCGCGAGCGCGGGGGCCGACG GCTCTTCTCGCGGGTCCGGACCGCGAGCGCGGGGGCTGACG < 41bp 1 0.653465487637431 1 0.144940733909607 experiment 0.693069024725138 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PTPMT1 ENSG00000110536 UTR5 Human protein_coding chr11:47587131 chr11:47587147 . . 0 37 hm5C_associated_SNPs_9128 0 0 1 0 0 Ribosome 1 0.500231643921255 1 0.99953671215749 hm5C_site_11561 DeepMRMD:1;iRNA_m5C:0.99953671215749 11562 chr11 48152011 48152011 1 + C T rs145863492 48152020 + 48152000 48152040 41 TCTTTGCATAGCCCCTGTTCCAGTTTCTGACTTCCGAGTGA TCTTTGCATAGTCCCTGTTCCAGTTTCTGACTTCCGAGTGA < 41bp 1 0.105193878549351 1 0.235733479261398 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48152020 chr11:48152011 nonsynonymous SNV 0.053 0 12 hm5C_associated_SNPs_9129 0 0 0 0 1 Endoplasmic reticulum 1 0.500231648806107 1 0.999536702387785 hm5C_site_11562 DeepMRMD:1;iRNA_m5C:0.999536702387785 11563 chr11 57508379 57508379 1 + C G rs115411262 57508393 + 57508373 57508413 41 ACTAACCCTCTGACATACTCCCCACACCCAGTTGATGGCTT ACTAACGCTCTGACATACTCCCCACACCCAGTTGATGGCTT < 41bp 1 0.121833735202305 1 0.383266687393188 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMX2-CTNND1 ENSG00000213593 UTR3 Human protein_coding chr11:57508393 chr11:57508379 . . 0 7 hm5C_associated_SNPs_9130 0 0 1 1 0 exosome 1 0.500231643922643 1 0.999536712154714 hm5C_site_11563 DeepMRMD:1;iRNA_m5C:0.999536712154714 11564 chr11 58379197 58379197 1 + G A rs140688902 58379204 + 58379184 58379224 41 TTAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCAAT TTAGAGAGGATGAAGAACCTCCAAGGAAGTGAGTAGGCAAT < 41bp 1 0.197354910214127 1 0.305800199508667 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379204 chr11:58379197 synonymous SNV . 0 14 hm5C_associated_SNPs_9132 0 0 1 0 1 chromatin 1 0.500231679418316 1 0.999536641163368 hm5C_site_11564 DeepMRMD:1;iRNA_m5C:0.999536641163368 11565 chr11 58379197 58379197 1 + G A rs140688902 58379205 + 58379185 58379225 41 TAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCAATT TAGAGAGGATGAAGAACCTCCAAGGAAGTGAGTAGGCAATT < 41bp 1 0.505256875684645 1 0.305405139923096 experiment 0.98948624863071 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379205 chr11:58379197 synonymous SNV . 0 13 hm5C_associated_SNPs_9133 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_11565 DeepMRMD:1;iRNA_m5C:0.999536712157815 11566 chr11 58959633 58959633 1 + G A rs186374111 58959625 + 58959605 58959645 41 CCTCAGGCTACAAGGGCCCGCAGCCTACGGTAAAACCTGAC CCTCAGGCTACAAGGGCCCGCAGCCTACAGTAAAACCTGAC < 41bp 1 0.223181032162259 1 0.487181901931763 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX4 ENSG00000110042 CDS Human protein_coding chr11:58959625 chr11:58959633 synonymous SNV . 0 29 hm5C_associated_SNPs_9134 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11566 DeepMRMD:1;iRNA_m5C:0.999536712157815 11567 chr11 59323936 59323936 1 + T C rs538766270 59323918 + 59323898 59323938 41 AGGGGCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTA AGGGGCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTCTA < 41bp 1 0.626732558037698 1 0.308619797229767 experiment 0.746534883924605 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323918 chr11:59323936 . . 0 39 hm5C_associated_SNPs_9135 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11567 DeepMRMD:1;iRNA_m5C:0.999536712157815 11568 chr11 59323936 59323936 1 + T C rs538766270 59323926 + 59323906 59323946 41 GGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG GGATAGCTCAGTCGGTAGAGCATCAGACTTCTAATCTGAGG < 41bp 1 0.43952108823344 1 0.0615642964839935 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323926 chr11:59323936 . . 0 31 hm5C_associated_SNPs_9136 0 0 1 0 0 unknown 1 0.50023164191564 1 0.99953671616872 hm5C_site_11568 DeepMRMD:1;iRNA_m5C:0.99953671616872 11569 chr11 59323936 59323936 1 + T C rs538766270 59323929 + 59323909 59323949 41 TAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTC TAGCTCAGTCGGTAGAGCATCAGACTTCTAATCTGAGGGTC < 41bp 1 0.395771645329821 1 0.515528559684753 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323929 chr11:59323936 . . 0 28 hm5C_associated_SNPs_9137 0 0 1 0 0 unknown 1 0.500231643921774 0.968942880630494 0.999536712156452 hm5C_site_11569 DeepMRMD:0.968942880630494;iRNA_m5C:0.999536712156452 11570 chr11 59323936 59323936 1 + T C rs538766270 59323933 + 59323913 59323953 41 TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCCGGG TCAGTCGGTAGAGCATCAGACTTCTAATCTGAGGGTCCGGG < 41bp 1 0.0863999097664275 1 0.0262148380279541 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323933 chr11:59323936 . . 0 24 hm5C_associated_SNPs_9138 0 0 1 0 0 unknown 1 0.500231644216009 1 0.999536711567981 hm5C_site_11570 DeepMRMD:1;iRNA_m5C:0.999536711567981 11571 chr11 59323936 59323936 1 + T C rs538766270 59323941 + 59323921 59323961 41 TAGAGCATCAGACTTTTAATCTGAGGGTCCGGGGTTCAAGT TAGAGCATCAGACTTCTAATCTGAGGGTCCGGGGTTCAAGT < 41bp 1 0.553544549618586 1 0.780838489532471 experiment 0.892910900762829 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323941 chr11:59323936 . . 0 16 hm5C_associated_SNPs_9139 0 0 1 0 0 unknown 1 0.500231644115285 0.438323020935058 0.999536711769431 hm5C_site_11571 DeepMRMD:0.438323020935058;iRNA_m5C:0.999536711769431 11572 chr11 59323936 59323936 1 + T C rs538766270 59323949 + 59323929 59323969 41 CAGACTTTTAATCTGAGGGTCCGGGGTTCAAGTCCCTGTTC CAGACTTCTAATCTGAGGGTCCGGGGTTCAAGTCCCTGTTC < 41bp 1 0.487540040844373 1 0.733880698680878 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323949 chr11:59323936 . . 0 8 hm5C_associated_SNPs_9140 0 0 1 0 0 unknown 1 0.500231643921254 0.532238602638244 0.999536712157493 hm5C_site_11572 DeepMRMD:0.532238602638244;iRNA_m5C:0.999536712157493 11573 chr11 59323950 59323950 1 + C G rs7924849 59323933 + 59323913 59323953 41 TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCCGGG TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGGGG < 41bp 1 0.0372723581970487 1 0.0167096257209778 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323933 chr11:59323950 . . 0 38 hm5C_associated_SNPs_9142 0 0 1 0 0 unknown 1 0.500231643972103 1 0.999536712055793 hm5C_site_11573 DeepMRMD:1;iRNA_m5C:0.999536712055793 11574 chr11 59323950 59323950 1 + C G rs7924849 59323941 + 59323921 59323961 41 TAGAGCATCAGACTTTTAATCTGAGGGTCCGGGGTTCAAGT TAGAGCATCAGACTTTTAATCTGAGGGTCGGGGGTTCAAGT < 41bp 1 0.579205869120071 1 0.746915698051453 experiment 0.841588261759857 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323941 chr11:59323950 . . 0 30 hm5C_associated_SNPs_9143 0 0 1 0 0 unknown 1 0.50023164380888 0.506168603897094 0.99953671238224 hm5C_site_11574 DeepMRMD:0.506168603897094;iRNA_m5C:0.99953671238224 11575 chr11 59323950 59323950 1 + C G rs7924849 59323957 + 59323937 59323977 41 TAATCTGAGGGTCCGGGGTTCAAGTCCCTGTTCGGGCGGAT TAATCTGAGGGTCGGGGGTTCAAGTCCCTGTTCGGGCGGAT < 41bp 1 0.32051835164431 1 0.591782927513123 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323957 chr11:59323950 . . 0 14 hm5C_associated_SNPs_9145 0 0 1 0 0 unknown 1 0.500231643921092 0.816434144973754 0.999536712157815 hm5C_site_11575 DeepMRMD:0.816434144973754;iRNA_m5C:0.999536712157815 11576 chr11 59323950 59323950 1 + C G rs7924849 59323962 + 59323942 59323982 41 TGAGGGTCCGGGGTTCAAGTCCCTGTTCGGGCGGATGCTGT TGAGGGTCGGGGGTTCAAGTCCCTGTTCGGGCGGATGCTGT < 41bp 1 0.191820800226401 1 0.0488811731338501 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323962 chr11:59323950 . . 0 9 hm5C_associated_SNPs_9146 0 0 1 0 0 unknown 1 0.500231643062053 1 0.999536713875894 hm5C_site_11576 DeepMRMD:1;iRNA_m5C:0.999536713875894 11577 chr11 59323950 59323950 1 + C G rs7924849 59323963 + 59323943 59323983 41 GAGGGTCCGGGGTTCAAGTCCCTGTTCGGGCGGATGCTGTT GAGGGTCGGGGGTTCAAGTCCCTGTTCGGGCGGATGCTGTT < 41bp 1 0.123303085979896 1 0.0529439151287079 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323963 chr11:59323950 . . 0 8 hm5C_associated_SNPs_9147 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11577 DeepMRMD:1;iRNA_m5C:0.999536712157815 11578 chr11 59323950 59323950 1 + C G rs7924849 59323964 + 59323944 59323984 41 AGGGTCCGGGGTTCAAGTCCCTGTTCGGGCGGATGCTGTTT AGGGTCGGGGGTTCAAGTCCCTGTTCGGGCGGATGCTGTTT < 41bp 1 0.204292014871655 1 0.0638445615768433 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323964 chr11:59323950 . . 0 7 hm5C_associated_SNPs_9148 0 0 1 0 0 unknown 1 0.50023164522544 1 0.99953670954912 hm5C_site_11578 DeepMRMD:1;iRNA_m5C:0.99953670954912 11579 chr11 59323950 59323950 1 + C G rs7924849 59323969 + 59323949 59323989 41 CCGGGGTTCAAGTCCCTGTTCGGGCGGATGCTGTTTTAGTT CGGGGGTTCAAGTCCCTGTTCGGGCGGATGCTGTTTTAGTT < 41bp 1 0.535842718140107 1 0.882438659667969 experiment 0.928314563719786 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323969 chr11:59323950 . . 0 2 hm5C_associated_SNPs_9149 0 0 1 0 0 unknown 1 0.500231643921092 0.235122680664062 0.999536712157815 hm5C_site_11579 DeepMRMD:0.235122680664062;iRNA_m5C:0.999536712157815 11580 chr11 59323951 59323951 1 + G A rs7952367 59323933 + 59323913 59323953 41 TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCCGGG TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCCAGG < 41bp 1 0.0348913387752366 1 0.00598177313804626 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323933 chr11:59323951 . . 0 39 hm5C_associated_SNPs_9150 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_11580 DeepMRMD:1;iRNA_m5C:0.999536712157814 11581 chr11 59323951 59323951 1 + G A rs7952367 59323941 + 59323921 59323961 41 TAGAGCATCAGACTTTTAATCTGAGGGTCCGGGGTTCAAGT TAGAGCATCAGACTTTTAATCTGAGGGTCCAGGGTTCAAGT < 41bp 1 0.619487472356565 1 0.813588976860046 experiment 0.76102505528687 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323941 chr11:59323951 . . 0 31 hm5C_associated_SNPs_9151 0 0 1 0 0 unknown 1 0.500231643917316 0.372822046279908 0.999536712165369 hm5C_site_11581 DeepMRMD:0.372822046279908;iRNA_m5C:0.999536712165369 11582 chr11 59323951 59323951 1 + G A rs7952367 59323949 + 59323929 59323969 41 CAGACTTTTAATCTGAGGGTCCGGGGTTCAAGTCCCTGTTC CAGACTTTTAATCTGAGGGTCCAGGGTTCAAGTCCCTGTTC < 41bp 1 0.348862276158819 1 0.47988349199295 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323949 chr11:59323951 . . 0 23 hm5C_associated_SNPs_9152 0 0 1 0 0 unknown 1 0.500231643918874 1 0.999536712162252 hm5C_site_11582 DeepMRMD:1;iRNA_m5C:0.999536712162252 11583 chr11 59323951 59323951 1 + G A rs7952367 59323957 + 59323937 59323977 41 TAATCTGAGGGTCCGGGGTTCAAGTCCCTGTTCGGGCGGAT TAATCTGAGGGTCCAGGGTTCAAGTCCCTGTTCGGGCGGAT < 41bp 1 0.28721995894069 1 0.239699393510818 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323957 chr11:59323951 . . 0 15 hm5C_associated_SNPs_9154 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_11583 DeepMRMD:1;iRNA_m5C:0.999536712157816 11584 chr11 59323951 59323951 1 + G A rs7952367 59323962 + 59323942 59323982 41 TGAGGGTCCGGGGTTCAAGTCCCTGTTCGGGCGGATGCTGT TGAGGGTCCAGGGTTCAAGTCCCTGTTCGGGCGGATGCTGT < 41bp 1 0.135640612239885 1 0.0426632761955261 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323962 chr11:59323951 . . 0 10 hm5C_associated_SNPs_9155 0 0 1 0 0 unknown 1 0.500231644243904 1 0.999536711512192 hm5C_site_11584 DeepMRMD:1;iRNA_m5C:0.999536711512192 11585 chr11 59323951 59323951 1 + G A rs7952367 59323963 + 59323943 59323983 41 GAGGGTCCGGGGTTCAAGTCCCTGTTCGGGCGGATGCTGTT GAGGGTCCAGGGTTCAAGTCCCTGTTCGGGCGGATGCTGTT < 41bp 1 0.0798671462594558 1 0.0480575561523438 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323963 chr11:59323951 . . 0 9 hm5C_associated_SNPs_9156 0 0 1 0 0 unknown 1 0.50023164392109 1 0.999536712157819 hm5C_site_11585 DeepMRMD:1;iRNA_m5C:0.999536712157819 11586 chr11 59323951 59323951 1 + G A rs7952367 59323964 + 59323944 59323984 41 AGGGTCCGGGGTTCAAGTCCCTGTTCGGGCGGATGCTGTTT AGGGTCCAGGGTTCAAGTCCCTGTTCGGGCGGATGCTGTTT < 41bp 1 0.169932397412582 1 0.0583163201808929 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323964 chr11:59323951 . . 0 8 hm5C_associated_SNPs_9157 0 0 1 0 0 unknown 1 0.500231643922764 1 0.999536712154473 hm5C_site_11586 DeepMRMD:1;iRNA_m5C:0.999536712154473 11587 chr11 59323951 59323951 1 + G A rs7952367 59323969 + 59323949 59323989 41 CCGGGGTTCAAGTCCCTGTTCGGGCGGATGCTGTTTTAGTT CCAGGGTTCAAGTCCCTGTTCGGGCGGATGCTGTTTTAGTT < 41bp 1 0.554269981666326 1 0.88853508234024 experiment 0.891460036667348 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target OR4D9;OSBP ENSG00000254770;ENSG00000252893 intergenic Human other chr11:59323969 chr11:59323951 . . 0 3 hm5C_associated_SNPs_9158 0 0 1 0 0 unknown 1 0.500231643921092 0.22292983531952 0.999536712157815 hm5C_site_11587 DeepMRMD:0.22292983531952;iRNA_m5C:0.999536712157815 11588 chr11 59569210 59569210 1 + T C rs76410717 59569203 + 59569183 59569223 41 GGTGTATTCACTCATGTGTTCCAGATGTATTCTAATTGTGT GGTGTATTCACTCATGTGTTCCAGATGCATTCTAATTGTGT < 41bp 1 0.180604842310385 1 0.1291264295578 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STX3 ENSG00000166900 UTR3 Human protein_coding chr11:59569203 chr11:59569210 . . 0 28 hm5C_associated_SNPs_9159 0 0 1 0 0 Cytosol 1 0.500231181997746 1 0.999537636004507 hm5C_site_11588 DeepMRMD:1;iRNA_m5C:0.999537636004507 11589 chr11 60617812 60617812 1 + C T rs117062491 60617811 + 60617791 60617831 41 AGATCTGAGCTCAGGACGGCCCGAGGCCTTCCATGGCCAAC AGATCTGAGCTCAGGACGGCCTGAGGCCTTCCATGGCCAAC < 41bp 1 0.604272213385887 1 0.254343926906586 experiment 0.791455573228227 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CCDC86 ENSG00000256813 ncRNA_intronic Human antisense chr11:60617811 chr11:60617812 . . 0 22 hm5C_associated_SNPs_9160 0 0 1 0 0 Ribosome 1 0.500231595288205 1 0.99953680942359 hm5C_site_11589 DeepMRMD:1;iRNA_m5C:0.99953680942359 11590 chr11 60689674 60689674 1 + G A rs372992625 60689694 + 60689674 60689714 41 GAGCTGAGCTGCTTCGGGGCCATGCAGCCCTCCTGCCAGCC AAGCTGAGCTGCTTCGGGGCCATGCAGCCCTCCTGCCAGCC < 41bp 1 0.302338658356447 1 0.0984079837799072 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM109 ENSG00000256196 ncRNA_intronic Human antisense chr11:60689694 chr11:60689674 . . 0 1 hm5C_associated_SNPs_9161 0 0 1 1 0 Ribosome 1 0.500231643921111 1 0.999536712157779 hm5C_site_11590 DeepMRMD:1;iRNA_m5C:0.999536712157779 11591 chr11 60702039 60702039 1 + G A rs547223000 60702059 + 60702039 60702079 41 GGTGTGCGCTTCCTCGCCCCCTTCGCGGCCCACCCGCTGGA AGTGTGCGCTTCCTCGCCCCCTTCGCGGCCCACCCGCTGGA < 41bp 1 0.414198670229434 1 0.326725244522095 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60702059 chr11:60702039 nonsynonymous SNV 0.872 0 1 hm5C_associated_SNPs_9162 0 0 1 0 1 Ribosome 1 0.500241652374691 1 0.999516695250617 hm5C_site_11591 DeepMRMD:1;iRNA_m5C:0.999516695250617 11592 chr11 60703981 60703981 1 + C T rs150465123 60703977 + 60703957 60703997 41 GCCACTGACCCCACCTCCCCCCAGCCCCACAACTGGGTCTG GCCACTGACCCCACCTCCCCCCAGTCCCACAACTGGGTCTG < 41bp 1 0.141691618581171 1 0.449329078197479 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60703977 chr11:60703981 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_9163 0 0 1 0 0 Ribosome 1 0.500231643875889 1 0.999536712248221 hm5C_site_11592 DeepMRMD:1;iRNA_m5C:0.999536712248221 11593 chr11 60704123 60704123 1 + G A rs199588097 60704142 + 60704122 60704162 41 GGCCCTCCTGGGGGCACCACCAGCTCCTCAAGCACCCTGGC GACCCTCCTGGGGGCACCACCAGCTCCTCAAGCACCCTGGC < 41bp 1 0.533715721341059 1 0.886388301849365 experiment 0.932568557317882 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60704142 chr11:60704123 nonsynonymous SNV 0.000 0 2 hm5C_associated_SNPs_9164 0 0 1 0 0 Ribosome 1 0.500231643921092 0.22722339630127 0.999536712157815 hm5C_site_11593 DeepMRMD:0.22722339630127;iRNA_m5C:0.999536712157815 11594 chr11 60704125 60704125 1 + C T rs201654663 60704142 + 60704122 60704162 41 GGCCCTCCTGGGGGCACCACCAGCTCCTCAAGCACCCTGGC GGCTCTCCTGGGGGCACCACCAGCTCCTCAAGCACCCTGGC < 41bp 1 0.559368187000452 1 0.888276696205139 experiment 0.881263625999096 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60704142 chr11:60704125 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_9165 0 0 1 0 0 Ribosome 1 0.500231643913961 0.223446607589722 0.999536712172078 hm5C_site_11594 DeepMRMD:0.223446607589722;iRNA_m5C:0.999536712172078 11595 chr11 60704419 60704419 1 + G A rs201645478 60704431 + 60704411 60704451 41 GGGGCAACGAGGGTGGAGGTCCCACTGAGCCTCTCGCCTGC GGGGCAACAAGGGTGGAGGTCCCACTGAGCCTCTCGCCTGC < 41bp 1 0.134169058868908 1 0.131736844778061 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM132A ENSG00000006118 UTR3 Human protein_coding chr11:60704431 chr11:60704419 . . 0 9 hm5C_associated_SNPs_9166 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_11595 DeepMRMD:1;iRNA_m5C:0.999536712157817 11596 chr11 61100692 61100692 1 + C T rs28720247 61100702 + 61100682 61100722 41 ACCGCCTCGCCTCTTTCCGCCAGCGCCCGCAGGACCCGGAT ACCGCCTCGCTTCTTTCCGCCAGCGCCCGCAGGACCCGGAT < 41bp 1 0.488414192068516 1 0.810303807258606 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TKFC ENSG00000149476;ENSG00000167986 UTR5 Human other chr11:61100702 chr11:61100692 . . 0 11 hm5C_associated_SNPs_9167 0 0 0 0 0 Cytosol 1 0.500231644008511 0.379392385482788 0.999536711982979 hm5C_site_11596 DeepMRMD:0.379392385482788;iRNA_m5C:0.999536711982979 11597 chr11 61129724 61129724 1 + A G rs7120780 61129707 - 61129687 61129727 41 AGCTTTCGCTGTTCGGGGCCCGGCCTGCTCCGGGCCCTCCC AGCCTTCGCTGTTCGGGGCCCGGCCTGCTCCGGGCCCTCCC < 41bp 1 0.427988819790901 1 0.36023473739624 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CYB561A3;TMEM138 ENSG00000149483;ENSG00000162144 UTR5 Human other chr11:61129707 chr11:61129724 . . 0 4 hm5C_associated_SNPs_9168 1 0 1 0 0 unknown 1 0.500231643924191 1 0.999536712151619 hm5C_site_11597 DeepMRMD:1;iRNA_m5C:0.999536712151619 Joubert syndrome Joubert syndrome 11598 chr11 61165769 61165769 1 + A G rs111371929 61165787 + 61165767 61165807 41 GCAGCCCATCAGGCTGACACCACACATATTGCTTCTGGTAC GCGGCCCATCAGGCTGACACCACACATATTGCTTCTGGTAC < 41bp 1 0.378507552810098 1 0.090362936258316 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM216 ENSG00000187049 UTR3 Human protein_coding chr11:61165787 chr11:61165769 . . 0 3 hm5C_associated_SNPs_9169 3 0 1 0 1 Ribosome 1 0.50027811188897 1 0.99944377622206 hm5C_site_11598 DeepMRMD:1;iRNA_m5C:0.99944377622206 not specified not specified 11599 chr11 61252163 61252163 1 + C T rs373143089 61252171 + 61252151 61252191 41 TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCCAGGAGCA TCCTCCCAGGTCTGGAAGGTCCATTTCGACACCCAGGAGCA < 41bp 1 0.103809786165289 1 0.0417065322399139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252171 chr11:61252163 nonsynonymous SNV 0.968 2 13 hm5C_associated_SNPs_9170 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11599 DeepMRMD:1;iRNA_m5C:0.999536712157815 11600 chr11 61404274 61404274 1 + G A rs148195073 61404261 + 61404241 61404281 41 GGGAGCAGACAATGTGAACTCCAAGCAGATGCAGCAGATCC GGGAGCAGACAATGTGAACTCCAAGCAGATGCAACAGATCC < 41bp 1 0.31384456233675 1 0.711942136287689 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404261 chr11:61404274 . . 0 34 hm5C_associated_SNPs_9172 0 0 0 0 0 unknown 1 0.500231639908821 0.576115727424622 0.999536720182359 hm5C_site_11600 DeepMRMD:0.576115727424622;iRNA_m5C:0.999536720182359 11601 chr11 61404334 61404334 1 + G A rs568096714 61404327 + 61404307 61404347 41 GGTGCTGATGGGCAAGAACGCCATGACGCGCAAGGCCATCC GGTGCTGATGGGCAAGAACGCCATGACACGCAAGGCCATCC < 41bp 1 0.350820347268058 1 0.237450748682022 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404327 chr11:61404334 . . 0 28 hm5C_associated_SNPs_9173 0 0 0 0 0 unknown 1 0.50023263293638 1 0.999534734127241 hm5C_site_11601 DeepMRMD:1;iRNA_m5C:0.999534734127241 11602 chr11 61404336 61404336 1 + G A rs17626916 61404327 + 61404307 61404347 41 GGTGCTGATGGGCAAGAACGCCATGACGCGCAAGGCCATCC GGTGCTGATGGGCAAGAACGCCATGACGCACAAGGCCATCC < 41bp 1 0.369979900697424 1 0.254059255123138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404327 chr11:61404336 . . 0 30 hm5C_associated_SNPs_9175 0 0 0 0 0 unknown 1 0.500231644694866 1 0.999536710610268 hm5C_site_11602 DeepMRMD:1;iRNA_m5C:0.999536710610268 11603 chr11 61511078 61511078 1 + C T rs149360213 61511075 + 61511055 61511095 41 GCTGTCGCCAGTGGTTGCGGCGGCGGCCCGCCAGGACCCGG GCTGTCGCCAGTGGTTGCGGCGGTGGCCCGCCAGGACCCGG < 41bp 1 0.396879890740182 1 0.779499650001526 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61511075 chr11:61511078 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_9177 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920924 0.441000699996948 0.999536712158152 hm5C_site_11603 DeepMRMD:0.441000699996948;iRNA_m5C:0.999536712158152 11604 chr11 61511081 61511081 1 + C A rs144674730 61511075 + 61511055 61511095 41 GCTGTCGCCAGTGGTTGCGGCGGCGGCCCGCCAGGACCCGG GCTGTCGCCAGTGGTTGCGGCGGCGGACCGCCAGGACCCGG < 41bp 1 0.629176270544209 1 0.89159107208252 experiment 0.741647458911582 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61511075 chr11:61511081 nonsynonymous SNV 0.437 1 27 hm5C_associated_SNPs_9178 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643425796 0.21681785583496 0.999536713148407 hm5C_site_11604 DeepMRMD:0.21681785583496;iRNA_m5C:0.999536713148407 11605 chr11 61512111 61512111 1 + C T rs185308016 61512108 + 61512088 61512128 41 ATCGCTGCTGAGCTGGGGGTCCGCATCCCTACCTCAGCTTA ATCGCTGCTGAGCTGGGGGTCCGTATCCCTACCTCAGCTTA < 41bp 1 0.279128715171236 1 0.108972907066345 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAGLA ENSG00000134780 UTR3 Human protein_coding chr11:61512108 chr11:61512111 . . 0 24 hm5C_associated_SNPs_9179 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11605 DeepMRMD:1;iRNA_m5C:0.999536712157815 11606 chr11 61512111 61512111 1 + C T rs185308016 61512109 + 61512089 61512129 41 TCGCTGCTGAGCTGGGGGTCCGCATCCCTACCTCAGCTTAG TCGCTGCTGAGCTGGGGGTCCGTATCCCTACCTCAGCTTAG < 41bp 1 0.098028611711279 1 0.145927965641022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DAGLA ENSG00000134780 UTR3 Human protein_coding chr11:61512109 chr11:61512111 . . 0 23 hm5C_associated_SNPs_9180 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921121 1 0.999536712157759 hm5C_site_11606 DeepMRMD:1;iRNA_m5C:0.999536712157759 11607 chr11 61513610 61513610 1 + G A rs556055235 61513605 + 61513585 61513625 41 CCTGGGGGCCTGAATTCTGGCCCCCGGCTCCCCACACAGCT CCTGGGGGCCTGAATTCTGGCCCCCAGCTCCCCACACAGCT < 41bp 1 0.110803309934724 1 0.0839853882789612 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DAGLA ENSG00000134780 UTR3 Human protein_coding chr11:61513605 chr11:61513610 . . 0 26 hm5C_associated_SNPs_9181 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11607 DeepMRMD:1;iRNA_m5C:0.999536712157815 11608 chr11 61513610 61513610 1 + G A rs556055235 61513606 + 61513586 61513626 41 CTGGGGGCCTGAATTCTGGCCCCCGGCTCCCCACACAGCTG CTGGGGGCCTGAATTCTGGCCCCCAGCTCCCCACACAGCTG < 41bp 1 0.279257322402977 1 0.13640296459198 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DAGLA ENSG00000134780 UTR3 Human protein_coding chr11:61513606 chr11:61513610 . . 0 25 hm5C_associated_SNPs_9182 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643924151 1 0.999536712151698 hm5C_site_11608 DeepMRMD:1;iRNA_m5C:0.999536712151698 11609 chr11 61513610 61513610 1 + G A rs556055235 61513607 + 61513587 61513627 41 TGGGGGCCTGAATTCTGGCCCCCGGCTCCCCACACAGCTGG TGGGGGCCTGAATTCTGGCCCCCAGCTCCCCACACAGCTGG < 41bp 1 0.187832319250992 1 0.107952356338501 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DAGLA ENSG00000134780 UTR3 Human protein_coding chr11:61513607 chr11:61513610 . . 0 24 hm5C_associated_SNPs_9183 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11609 DeepMRMD:1;iRNA_m5C:0.999536712157815 11610 chr11 61513610 61513610 1 + G A rs556055235 61513608 + 61513588 61513628 41 GGGGGCCTGAATTCTGGCCCCCGGCTCCCCACACAGCTGGG GGGGGCCTGAATTCTGGCCCCCAGCTCCCCACACAGCTGGG < 41bp 1 0.165412483406307 1 0.241667032241821 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DAGLA ENSG00000134780 UTR3 Human protein_coding chr11:61513608 chr11:61513610 . . 0 23 hm5C_associated_SNPs_9184 0 0 0 0 0 Endoplasmic reticulum 1 0.500231649541699 1 0.999536700916602 hm5C_site_11610 DeepMRMD:1;iRNA_m5C:0.999536700916602 11611 chr11 61513610 61513610 1 + G A rs556055235 61513609 + 61513589 61513629 41 GGGGCCTGAATTCTGGCCCCCGGCTCCCCACACAGCTGGGA GGGGCCTGAATTCTGGCCCCCAGCTCCCCACACAGCTGGGA < 41bp 1 0.247641193532613 1 0.469017386436462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DAGLA ENSG00000134780 UTR3 Human protein_coding chr11:61513609 chr11:61513610 . . 0 22 hm5C_associated_SNPs_9185 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11611 DeepMRMD:1;iRNA_m5C:0.999536712157815 11612 chr11 61634155 61634155 1 + G A rs114296331 61634168 + 61634148 61634188 41 AGGTCTCGTCCCAGCCCTCCCCATCTCGGGGCTGCTGTGTG AGGTCTCATCCCAGCCCTCCCCATCTCGGGGCTGCTGTGTG < 41bp 1 0.0619381584649769 1 0.0877505838871002 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FADS2 ENSG00000134824 UTR3 Human protein_coding chr11:61634168 chr11:61634155 . . 0 8 hm5C_associated_SNPs_9186 0 0 1 0 0 Ribosome 1 0.500231643614148 1 0.999536712771704 hm5C_site_11612 DeepMRMD:1;iRNA_m5C:0.999536712771704 11613 chr11 61722639 61722639 1 + C T rs57132800 61722649 + 61722629 61722669 41 ATTGCGACAGCTACATCCAGCTCATCCCCATTTCCTTCGTG ATTGCGACAGTTACATCCAGCTCATCCCCATTTCCTTCGTG < 41bp 1 0.201626373027216 1 0.0799563527107239 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61722649 chr11:61722639 synonymous SNV . 0 11 hm5C_associated_SNPs_9187 3 0 0 0 1 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_11613 DeepMRMD:1;iRNA_m5C:0.999536712157814 Vitreoretinochoroidopathy Vitreoretinochoroidopathy 11614 chr11 61722645 61722645 1 + C A rs1109748 61722649 + 61722629 61722669 41 ATTGCGACAGCTACATCCAGCTCATCCCCATTTCCTTCGTG ATTGCGACAGCTACATACAGCTCATCCCCATTTCCTTCGTG < 41bp 1 0.220192806595425 1 0.0716200470924377 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61722649 chr11:61722645 synonymous SNV . 0 17 hm5C_associated_SNPs_9188 5 1 0 0 1 chromatin 1 0.500231704577312 1 0.999536590845375 hm5C_site_11614 DeepMRMD:1;iRNA_m5C:0.999536590845375 not provided not provided 11615 chr11 61726372 61726372 1 + A G rs550013862 61726353 + 61726333 61726373 41 TCCTGTCACTGTGACACACACACACACACACACACACACAC TCCTGTCACTGTGACACACACACACACACACACACACACGC < 41bp 1 0.102110024392908 1 0.136978447437286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726353 chr11:61726372 . . 0 40 hm5C_associated_SNPs_9189 0 0 0 0 0 chromatin 1 0.502862548748239 1 0.994274902503523 hm5C_site_11615 DeepMRMD:1;iRNA_m5C:0.994274902503523 11616 chr11 61726372 61726372 1 + A G rs550013862 61726355 + 61726335 61726375 41 CTGTCACTGTGACACACACACACACACACACACACACACAC CTGTCACTGTGACACACACACACACACACACACACACGCAC < 41bp 1 0.10532057191848 1 0.153413087129593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726355 chr11:61726372 . . 0 38 hm5C_associated_SNPs_9190 0 0 0 0 0 chromatin 1 0.506751654739541 1 0.986496690520918 hm5C_site_11616 DeepMRMD:1;iRNA_m5C:0.986496690520918 11617 chr11 61726372 61726372 1 + A G rs550013862 61726357 + 61726337 61726377 41 GTCACTGTGACACACACACACACACACACACACACACACAC GTCACTGTGACACACACACACACACACACACACACGCACAC < 41bp 1 0.0935862002659621 1 0.125383585691452 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726357 chr11:61726372 . . 0 36 hm5C_associated_SNPs_9191 0 0 0 0 0 chromatin 1 0.50456336570667 1 0.990873268586661 hm5C_site_11617 DeepMRMD:1;iRNA_m5C:0.990873268586661 11618 chr11 61726372 61726372 1 + A G rs550013862 61726359 + 61726339 61726379 41 CACTGTGACACACACACACACACACACACACACACACACAT CACTGTGACACACACACACACACACACACACACGCACACAT < 41bp 1 0.0657957334913416 1 0.153996109962463 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726359 chr11:61726372 . . 0 34 hm5C_associated_SNPs_9192 0 0 0 0 0 chromatin 1 0.501980743063859 1 0.996038513872282 hm5C_site_11618 DeepMRMD:1;iRNA_m5C:0.996038513872282 11619 chr11 61726372 61726372 1 + A G rs550013862 61726361 + 61726341 61726381 41 CTGTGACACACACACACACACACACACACACACACACATAC CTGTGACACACACACACACACACACACACACGCACACATAC < 41bp 1 0.075135024780157 1 0.126828581094742 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726361 chr11:61726372 . . 0 32 hm5C_associated_SNPs_9193 0 0 0 0 0 chromatin 1 0.507590792650499 1 0.984818414699002 hm5C_site_11619 DeepMRMD:1;iRNA_m5C:0.984818414699002 11620 chr11 61726372 61726372 1 + A G rs550013862 61726363 + 61726343 61726383 41 GTGACACACACACACACACACACACACACACACACATACAC GTGACACACACACACACACACACACACACGCACACATACAC < 41bp 1 0.0621840285189679 1 0.0846171677112579 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726363 chr11:61726372 . . 0 30 hm5C_associated_SNPs_9194 0 0 0 0 0 chromatin 1 0.507078010297425 1 0.98584397940515 hm5C_site_11620 DeepMRMD:1;iRNA_m5C:0.98584397940515 11621 chr11 61726372 61726372 1 + A G rs550013862 61726365 + 61726345 61726385 41 GACACACACACACACACACACACACACACACACATACACAC GACACACACACACACACACACACACACGCACACATACACAC < 41bp 1 0.0653893123362432 1 0.139323085546494 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726365 chr11:61726372 . . 0 28 hm5C_associated_SNPs_9195 0 0 0 0 0 chromatin 1 0.508270764170845 1 0.983458471658309 hm5C_site_11621 DeepMRMD:1;iRNA_m5C:0.983458471658309 11622 chr11 61726372 61726372 1 + A G rs550013862 61726367 + 61726347 61726387 41 CACACACACACACACACACACACACACACACATACACACAC CACACACACACACACACACACACACGCACACATACACACAC < 41bp 1 0.0685460610158356 1 0.0887881815433502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726367 chr11:61726372 . . 0 26 hm5C_associated_SNPs_9196 0 0 0 0 0 chromatin 1 0.508642064957112 1 0.982715870085776 hm5C_site_11622 DeepMRMD:1;iRNA_m5C:0.982715870085776 11623 chr11 61726372 61726372 1 + A G rs550013862 61726369 + 61726349 61726389 41 CACACACACACACACACACACACACACACATACACACACAC CACACACACACACACACACACACGCACACATACACACACAC < 41bp 1 0.112242688197903 1 0.114037573337555 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726369 chr11:61726372 . . 0 24 hm5C_associated_SNPs_9197 0 0 0 0 0 chromatin 1 0.505575834833827 1 0.988848330332346 hm5C_site_11623 DeepMRMD:1;iRNA_m5C:0.988848330332346 11624 chr11 61726372 61726372 1 + A G rs550013862 61726371 + 61726351 61726391 41 CACACACACACACACACACACACACACATACACACACACAC CACACACACACACACACACACGCACACATACACACACACAC < 41bp 1 0.0742802123667673 1 0.0880877375602722 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726371 chr11:61726372 . . 0 22 hm5C_associated_SNPs_9198 0 0 0 0 0 chromatin 1 0.505222406906648 1 0.989555186186705 hm5C_site_11624 DeepMRMD:1;iRNA_m5C:0.989555186186705 11625 chr11 61726372 61726372 1 + A G rs550013862 61726373 + 61726353 61726393 41 CACACACACACACACACACACACACATACACACACACACAC CACACACACACACACACACGCACACATACACACACACACAC < 41bp 1 0.0707065168238242 1 0.104285776615143 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726373 chr11:61726372 . . 0 20 hm5C_associated_SNPs_9199 0 0 0 0 0 chromatin 1 0.504961518211441 1 0.990076963577118 hm5C_site_11625 DeepMRMD:1;iRNA_m5C:0.990076963577118 11626 chr11 61726372 61726372 1 + A G rs550013862 61726375 + 61726355 61726395 41 CACACACACACACACACACACACATACACACACACACACAC CACACACACACACACACGCACACATACACACACACACACAC < 41bp 1 0.0699086287230831 1 0.0782333314418793 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726375 chr11:61726372 . . 0 18 hm5C_associated_SNPs_9200 0 0 0 0 0 chromatin 1 0.514578446915814 1 0.970843106168372 hm5C_site_11626 DeepMRMD:1;iRNA_m5C:0.970843106168372 11627 chr11 61726372 61726372 1 + A G rs550013862 61726377 + 61726357 61726397 41 CACACACACACACACACACACATACACACACACACACACGC CACACACACACACACGCACACATACACACACACACACACGC < 41bp 1 0.0276441801660205 1 0.255467236042023 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726377 chr11:61726372 . . 0 16 hm5C_associated_SNPs_9201 0 0 0 0 0 chromatin 1 0.515173525213557 1 0.969652949572887 hm5C_site_11627 DeepMRMD:1;iRNA_m5C:0.969652949572887 11628 chr11 61726372 61726372 1 + A G rs550013862 61726381 + 61726361 61726401 41 CACACACACACACACACATACACACACACACACACGCATTC CACACACACACGCACACATACACACACACACACACGCATTC < 41bp 1 0.0746550559113312 1 0.0630059838294983 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726381 chr11:61726372 . . 0 12 hm5C_associated_SNPs_9202 0 0 0 0 0 chromatin 1 0.504553279055695 1 0.99089344188861 hm5C_site_11628 DeepMRMD:1;iRNA_m5C:0.99089344188861 11629 chr11 61726372 61726372 1 + A G rs550013862 61726383 + 61726363 61726403 41 CACACACACACACACATACACACACACACACACGCATTCCT CACACACACGCACACATACACACACACACACACGCATTCCT < 41bp 1 0.0747165323801424 1 0.0477845966815948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726383 chr11:61726372 . . 0 10 hm5C_associated_SNPs_9203 0 0 0 0 0 chromatin 1 0.503631619800127 1 0.992736760399745 hm5C_site_11629 DeepMRMD:1;iRNA_m5C:0.992736760399745 11630 chr11 61726372 61726372 1 + A G rs550013862 61726385 + 61726365 61726405 41 CACACACACACACATACACACACACACACACGCATTCCTAT CACACACGCACACATACACACACACACACACGCATTCCTAT < 41bp 1 0.0668851638437103 1 0.103164732456207 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726385 chr11:61726372 . . 0 8 hm5C_associated_SNPs_9204 0 0 0 0 0 chromatin 1 0.509157074015941 1 0.981685851968117 hm5C_site_11630 DeepMRMD:1;iRNA_m5C:0.981685851968117 11631 chr11 61726379 61726379 1 + T C rs10897187 61726359 + 61726339 61726379 41 CACTGTGACACACACACACACACACACACACACACACACAT CACTGTGACACACACACACACACACACACACACACACACAC < 41bp 1 0.069759980471792 1 0.125580549240112 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726359 chr11:61726379 . . 0 41 hm5C_associated_SNPs_9205 0 0 0 0 0 chromatin 1 0.509356029181765 1 0.981287941636469 hm5C_site_11631 DeepMRMD:1;iRNA_m5C:0.981287941636469 11632 chr11 61726379 61726379 1 + T C rs10897187 61726361 + 61726341 61726381 41 CTGTGACACACACACACACACACACACACACACACACATAC CTGTGACACACACACACACACACACACACACACACACACAC < 41bp 1 0.073886000886535 1 0.125066816806793 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726361 chr11:61726379 . . 0 39 hm5C_associated_SNPs_9206 0 0 0 0 0 chromatin 1 0.507551498218452 1 0.984897003563096 hm5C_site_11632 DeepMRMD:1;iRNA_m5C:0.984897003563096 11633 chr11 61726379 61726379 1 + T C rs10897187 61726363 + 61726343 61726383 41 GTGACACACACACACACACACACACACACACACACATACAC GTGACACACACACACACACACACACACACACACACACACAC < 41bp 1 0.0677481523302987 1 0.0958547592163086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726363 chr11:61726379 . . 0 37 hm5C_associated_SNPs_9207 0 0 0 0 0 chromatin 1 0.502117008083269 1 0.995765983833462 hm5C_site_11633 DeepMRMD:1;iRNA_m5C:0.995765983833462 11634 chr11 61726379 61726379 1 + T C rs10897187 61726365 + 61726345 61726385 41 GACACACACACACACACACACACACACACACACATACACAC GACACACACACACACACACACACACACACACACACACACAC < 41bp 1 0.0640850193171388 1 0.109750807285309 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726365 chr11:61726379 . . 0 35 hm5C_associated_SNPs_9208 0 0 0 0 0 chromatin 1 0.505454756837097 1 0.989090486325806 hm5C_site_11634 DeepMRMD:1;iRNA_m5C:0.989090486325806 11635 chr11 61726379 61726379 1 + T C rs10897187 61726367 + 61726347 61726387 41 CACACACACACACACACACACACACACACACATACACACAC CACACACACACACACACACACACACACACACACACACACAC < 41bp 1 0.0583175417732545 1 0.10549795627594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726367 chr11:61726379 . . 0 33 hm5C_associated_SNPs_9209 0 0 0 0 0 chromatin 1 0.513576956336258 1 0.972846087327485 hm5C_site_11635 DeepMRMD:1;iRNA_m5C:0.972846087327485 11636 chr11 61726379 61726379 1 + T C rs10897187 61726369 + 61726349 61726389 41 CACACACACACACACACACACACACACACATACACACACAC CACACACACACACACACACACACACACACACACACACACAC < 41bp 1 0.0609501681999763 1 0.10549795627594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726369 chr11:61726379 . . 0 31 hm5C_associated_SNPs_9210 0 0 0 0 0 chromatin 1 0.513576956336258 1 0.972846087327485 hm5C_site_11636 DeepMRMD:1;iRNA_m5C:0.972846087327485 11637 chr11 61726379 61726379 1 + T C rs10897187 61726371 + 61726351 61726391 41 CACACACACACACACACACACACACACATACACACACACAC CACACACACACACACACACACACACACACACACACACACAC < 41bp 1 0.0632724552454489 1 0.10549795627594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726371 chr11:61726379 . . 0 29 hm5C_associated_SNPs_9211 0 0 0 0 0 chromatin 1 0.513576956336258 1 0.972846087327485 hm5C_site_11637 DeepMRMD:1;iRNA_m5C:0.972846087327485 11638 chr11 61726379 61726379 1 + T C rs10897187 61726373 + 61726353 61726393 41 CACACACACACACACACACACACACATACACACACACACAC CACACACACACACACACACACACACACACACACACACACAC < 41bp 1 0.0632525808092512 1 0.10549795627594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726373 chr11:61726379 . . 0 27 hm5C_associated_SNPs_9212 0 0 0 0 0 chromatin 1 0.513576956336258 1 0.972846087327485 hm5C_site_11638 DeepMRMD:1;iRNA_m5C:0.972846087327485 11639 chr11 61726379 61726379 1 + T C rs10897187 61726375 + 61726355 61726395 41 CACACACACACACACACACACACATACACACACACACACAC CACACACACACACACACACACACACACACACACACACACAC < 41bp 1 0.0651857322366415 1 0.10549795627594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726375 chr11:61726379 . . 0 25 hm5C_associated_SNPs_9213 0 0 0 0 0 chromatin 1 0.513576956336258 1 0.972846087327485 hm5C_site_11639 DeepMRMD:1;iRNA_m5C:0.972846087327485 11640 chr11 61726379 61726379 1 + T C rs10897187 61726377 + 61726357 61726397 41 CACACACACACACACACACACATACACACACACACACACGC CACACACACACACACACACACACACACACACACACACACGC < 41bp 1 0.0634713758647848 1 0.120033353567123 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726377 chr11:61726379 . . 0 23 hm5C_associated_SNPs_9214 0 0 0 0 0 chromatin 1 0.511175465825989 1 0.977649068348023 hm5C_site_11640 DeepMRMD:1;iRNA_m5C:0.977649068348023 11641 chr11 61726379 61726379 1 + T C rs10897187 61726381 + 61726361 61726401 41 CACACACACACACACACATACACACACACACACACGCATTC CACACACACACACACACACACACACACACACACACGCATTC < 41bp 1 0.0647635794548137 1 0.0816714465618134 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726381 chr11:61726379 . . 0 19 hm5C_associated_SNPs_9215 0 0 0 0 0 chromatin 1 0.514762370843741 1 0.970475258312517 hm5C_site_11641 DeepMRMD:1;iRNA_m5C:0.970475258312517 11642 chr11 61726379 61726379 1 + T C rs10897187 61726383 + 61726363 61726403 41 CACACACACACACACATACACACACACACACACGCATTCCT CACACACACACACACACACACACACACACACACGCATTCCT < 41bp 1 0.0514792928294203 1 0.0646360516548157 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726383 chr11:61726379 . . 0 17 hm5C_associated_SNPs_9216 0 0 0 0 0 chromatin 1 0.51871887348304 1 0.96256225303392 hm5C_site_11642 DeepMRMD:1;iRNA_m5C:0.96256225303392 11643 chr11 61726379 61726379 1 + T C rs10897187 61726385 + 61726365 61726405 41 CACACACACACACATACACACACACACACACGCATTCCTAT CACACACACACACACACACACACACACACACGCATTCCTAT < 41bp 1 0.0616481115725259 1 0.0948562920093536 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BEST1 ENSG00000167995 intronic Human protein_coding chr11:61726385 chr11:61726379 . . 0 15 hm5C_associated_SNPs_9217 0 0 0 0 0 chromatin 1 0.53293749798059 1 0.93412500403882 hm5C_site_11643 DeepMRMD:1;iRNA_m5C:0.93412500403882 11644 chr11 61891502 61891502 1 + C T rs143890868 61891497 + 61891477 61891517 41 AAAATCATAGTTTTCGCCCGCGCTGCGCCGCCTGGTTGCTC AAAATCATAGTTTTCGCCCGCGCTGTGCCGCCTGGTTGCTC < 41bp 1 0.172329553925899 1 0.177614092826843 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INCENP ENSG00000149503 UTR5 Human protein_coding chr11:61891497 chr11:61891502 . . 0 26 hm5C_associated_SNPs_9218 0 0 1 0 0 chromatin 1 0.500231643918067 1 0.999536712163866 hm5C_site_11644 DeepMRMD:1;iRNA_m5C:0.999536712163866 11645 chr11 61897298 61897298 1 + G A rs12281503 61897299 + 61897279 61897319 41 AGCCAGCTGAGCTCCCGACGCCTCCGCAGCAAGGACAGTGT AGCCAGCTGAGCTCCCGACACCTCCGCAGCAAGGACAGTGT < 41bp 1 0.0541205730089086 1 0.0987001061439514 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897299 chr11:61897298 nonsynonymous SNV 0.807 0 20 hm5C_associated_SNPs_9219 0 0 1 0 1 chromatin 1 0.500231643845404 1 0.999536712309191 hm5C_site_11645 DeepMRMD:1;iRNA_m5C:0.999536712309191 11646 chr11 61897799 61897799 1 + G A rs36067669 61897785 + 61897765 61897805 41 AAGCTCAGGATTGCGCAGGTCTCCCCTGGCCCACGGGACTC AAGCTCAGGATTGCGCAGGTCTCCCCTGGCCCACAGGACTC < 41bp 1 0.381115949499472 1 0.183012753725052 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897785 chr11:61897799 nonsynonymous SNV 0.002 0 35 hm5C_associated_SNPs_9220 0 0 1 0 0 chromatin 1 0.500231664075254 1 0.999536671849492 hm5C_site_11646 DeepMRMD:1;iRNA_m5C:0.999536671849492 11647 chr11 61913144 61913144 1 + C T rs116462742 61913150 + 61913130 61913170 41 GGCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGG GGCCAAGAAAAAGGTGGCGGCCAAGAAGATGGAGGAGGTGG < 41bp 1 0.1073121460786 1 0.316228210926056 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913150 chr11:61913144 nonsynonymous SNV 0.283 0 15 hm5C_associated_SNPs_9221 0 0 1 0 3 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_11647 DeepMRMD:1;iRNA_m5C:0.999536712157815 11648 chr11 61913144 61913144 1 + C T rs116462742 61913151 + 61913131 61913171 41 GCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGGA GCCAAGAAAAAGGTGGCGGCCAAGAAGATGGAGGAGGTGGA < 41bp 1 0.624704787589879 1 0.785861968994141 experiment 0.750590424820242 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913151 chr11:61913144 nonsynonymous SNV 0.283 0 14 hm5C_associated_SNPs_9222 0 0 1 0 3 chromatin 1 0.500231643921095 0.428276062011718 0.999536712157809 hm5C_site_11648 DeepMRMD:0.428276062011718;iRNA_m5C:0.999536712157809 11649 chr11 62104937 62104937 1 + T G rs2246920 62104948 + 62104928 62104968 41 CAGAGCGGTTGCGGGCTGAGCGGTTTCGAGCCGGCGTCGGG CAGAGCGGTGGCGGGCTGAGCGGTTTCGAGCCGGCGTCGGG < 41bp 1 0.652866708037646 1 0.461263835430145 experiment 0.694266583924708 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ASRGL1 ENSG00000255118 ncRNA_intronic Human antisense chr11:62104948 chr11:62104937 . . 0 10 hm5C_associated_SNPs_9223 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11649 DeepMRMD:1;iRNA_m5C:0.999536712157815 11650 chr11 62432903 62432903 1 + C G rs114019582 62432915 + 62432895 62432935 41 CTCCTTTTCTTGGCGGGGATCGGGCTTGTGGTGCCGCTCCC CTCCTTTTGTTGGCGGGGATCGGGCTTGTGGTGCCGCTCCC < 41bp 1 0.620306731894399 1 0.96754789352417 experiment 0.759386536211202 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SNORA57 ENSG00000206597 ncRNA_exonic Human snoRNA chr11:62432915 chr11:62432903 . . 0 9 hm5C_associated_SNPs_9224 0 0 1 0 0 unknown 1 0.500231643921092 0.0649042129516599 0.999536712157815 hm5C_site_11650 DeepMRMD:0.0649042129516599;iRNA_m5C:0.999536712157815 11651 chr11 62655900 62655900 1 + C T rs150311954 62655920 + 62655900 62655940 41 CGTTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC TGTTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC < 41bp 1 0.43210905171628 1 0.23368838429451 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62655920 chr11:62655900 nonsynonymous SNV 0.001 1 1 hm5C_associated_SNPs_9226 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11651 DeepMRMD:1;iRNA_m5C:0.999536712157815 11652 chr11 62656240 62656240 1 + T A rs181564225 62656234 + 62656214 62656254 41 CTTTGGCTTCTGATTTTTCTCTTTTTTAAAAACAAACAAAC CTTTGGCTTCTGATTTTTCTCTTTTTAAAAAACAAACAAAC < 41bp 1 0.126735226423767 1 0.274093717336655 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SLC3A2 ENSG00000168003 UTR3 Human protein_coding chr11:62656234 chr11:62656240 . . 0 27 hm5C_associated_SNPs_9227 0 0 1 0 0 Nucleus 1 0.500231643921051 1 0.999536712157898 hm5C_site_11652 DeepMRMD:1;iRNA_m5C:0.999536712157898 11653 chr11 62656316 62656316 1 + C G rs6932 62656319 + 62656299 62656339 41 TGCCTTCAAATAAAAGTCACCCCTGCATGGTGAAGTCTTCC TGCCTTCAAATAAAAGTGACCCCTGCATGGTGAAGTCTTCC < 41bp 1 0.101660424761812 1 0.0415571928024292 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC3A2 ENSG00000168003 UTR3 Human protein_coding chr11:62656319 chr11:62656316 . . 0 18 hm5C_associated_SNPs_9228 0 0 1 0 0 Nucleus 1 0.500231643927794 1 0.999536712144411 hm5C_site_11653 DeepMRMD:1;iRNA_m5C:0.999536712144411 11654 chr11 63449101 63449101 1 + G T rs372883387 63449096 + 63449076 63449116 41 TTTCACCCTTCTCCCACCCTCGCTCGCGTAGCCATGGCGGA TTTCACCCTTCTCCCACCCTCGCTCTCGTAGCCATGGCGGA < 41bp 1 0.424491758261542 1 0.195322215557098 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RTN3 ENSG00000133318 UTR5 Human protein_coding chr11:63449096 chr11:63449101 . . 0 26 hm5C_associated_SNPs_9229 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_11654 DeepMRMD:1;iRNA_m5C:0.999536712157815 11655 chr11 63449101 63449101 1 + G T rs372883387 63449100 + 63449080 63449120 41 ACCCTTCTCCCACCCTCGCTCGCGTAGCCATGGCGGAGCCG ACCCTTCTCCCACCCTCGCTCTCGTAGCCATGGCGGAGCCG < 41bp 1 0.586739523501893 1 0.228437423706055 experiment 0.826520952996214 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RTN3 ENSG00000133318 UTR5 Human protein_coding chr11:63449100 chr11:63449101 . . 0 22 hm5C_associated_SNPs_9230 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_11655 DeepMRMD:1;iRNA_m5C:0.999536712157815 11656 chr11 63526236 63526236 1 + T C rs8343 63526217 + 63526197 63526237 41 TTCTTTAATGATTTAACTATCAACTTGATAAATAACTTATA TTCTTTAATGATTTAACTATCAACTTGATAAATAACTTACA < 41bp 1 0.334815102478993 1 0.288797706365585 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RTN3 ENSG00000133318 UTR3 Human protein_coding chr11:63526217 chr11:63526236 . . 0 40 hm5C_associated_SNPs_9231 0 0 1 0 0 Endoplasmic reticulum 1 0.500231906326115 1 0.99953618734777 hm5C_site_11656 DeepMRMD:1;iRNA_m5C:0.99953618734777 11657 chr11 63526339 63526339 1 + G A rs1802332 63526347 + 63526327 63526367 41 TGCTGCGGTGGCGGTCACTCCCTCTGCCACTATCCCCAGGG TGCTGCGGTGGCAGTCACTCCCTCTGCCACTATCCCCAGGG < 41bp 1 0.254729978129133 1 0.436818242073059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RTN3 ENSG00000133318 UTR3 Human protein_coding chr11:63526347 chr11:63526339 . . 0 13 hm5C_associated_SNPs_9232 0 0 1 0 0 Endoplasmic reticulum 1 0.500231648396657 1 0.999536703206687 hm5C_site_11657 DeepMRMD:1;iRNA_m5C:0.999536703206687 11658 chr11 63526339 63526339 1 + G A rs1802332 63526350 + 63526330 63526370 41 TGCGGTGGCGGTCACTCCCTCTGCCACTATCCCCAGGGAAG TGCGGTGGCAGTCACTCCCTCTGCCACTATCCCCAGGGAAG < 41bp 1 0.487028314134249 1 0.151763141155243 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTN3 ENSG00000133318 UTR3 Human protein_coding chr11:63526350 chr11:63526339 . . 0 10 hm5C_associated_SNPs_9234 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_11658 DeepMRMD:1;iRNA_m5C:0.999536712157814 11659 chr11 63526991 63526991 1 + C T rs150406359 63526989 + 63526969 63527009 41 CTCCATCTTATTTTCTTAGCCCCCTTTGAGTGTTTTAACTG CTCCATCTTATTTTCTTAGCCCTCTTTGAGTGTTTTAACTG < 41bp 1 0.104282291691426 1 0.055157333612442 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTN3 ENSG00000133318 UTR3 Human protein_coding chr11:63526989 chr11:63526991 . . 0 23 hm5C_associated_SNPs_9235 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643933969 1 0.999536712132062 hm5C_site_11659 DeepMRMD:1;iRNA_m5C:0.999536712132062 11660 chr11 63586472 63586472 1 + C T rs189841854 63586469 + 63586449 63586489 41 TCCCCGGGCGGAGAGCCCCTCTCCAGGTGAGCCCTCCTGAG TCCCCGGGCGGAGAGCCCCTCTCTAGGTGAGCCCTCCTGAG < 41bp 1 0.695306524294986 1 0.742794454097748 experiment 0.609386951410029 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control C11orf84 ENSG00000168005 CDS Human protein_coding chr11:63586469 chr11:63586472 nonsynonymous SNV 0.802 2 24 hm5C_associated_SNPs_9236 0 0 1 0 1 Ribosome 1 0.500231643921092 0.514411091804504 0.999536712157815 hm5C_site_11660 DeepMRMD:0.514411091804504;iRNA_m5C:0.999536712157815 11661 chr11 63676415 63676415 1 + C T rs371393398 63676421 + 63676401 63676441 41 GAGGCCAAGCCCCGCTCCCTCCGCTTCACGTGGAGTATGAA GAGGCCAAGCCCCGTTCCCTCCGCTTCACGTGGAGTATGAA < 41bp 1 0.123937717030445 1 0.230584710836411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MARK2 ENSG00000072518 CDS Human protein_coding chr11:63676421 chr11:63676415 synonymous SNV . 0 15 hm5C_associated_SNPs_9237 0 0 1 0 1 Nucleus 1 0.500231643826197 1 0.999536712347606 hm5C_site_11661 DeepMRMD:1;iRNA_m5C:0.999536712347606 11662 chr11 63706474 63706474 1 + G A rs873928 63706472 + 63706452 63706492 41 GGCGCATGCGCGTTGCAGGGCCGTCCGCTCTGCTGCCGCCG GGCGCATGCGCGTTGCAGGGCCATCCGCTCTGCTGCCGCCG < 41bp 1 0.106644762562341 1 0.0432336032390594 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NAA40 ENSG00000110583 UTR5 Human protein_coding chr11:63706472 chr11:63706474 . . 0 23 hm5C_associated_SNPs_9238 0 0 1 0 0 Ribosome 1 0.500231654542945 1 0.99953669091411 hm5C_site_11662 DeepMRMD:1;iRNA_m5C:0.99953669091411 11663 chr11 63706474 63706474 1 + G A rs873928 63706484 + 63706464 63706504 41 TTGCAGGGCCGTCCGCTCTGCTGCCGCCGCTGTTGCAGCCA TTGCAGGGCCATCCGCTCTGCTGCCGCCGCTGTTGCAGCCA < 41bp 1 0.490316474892525 1 0.321981728076935 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA40 ENSG00000110583 UTR5 Human protein_coding chr11:63706484 chr11:63706474 . . 0 11 hm5C_associated_SNPs_9239 0 0 1 0 0 Ribosome 1 0.50023164392111 1 0.999536712157779 hm5C_site_11663 DeepMRMD:1;iRNA_m5C:0.999536712157779 11664 chr11 63706481 63706481 1 + C T rs549363738 63706472 + 63706452 63706492 41 GGCGCATGCGCGTTGCAGGGCCGTCCGCTCTGCTGCCGCCG GGCGCATGCGCGTTGCAGGGCCGTCCGCTTTGCTGCCGCCG < 41bp 1 0.165067350160893 1 0.103573083877563 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NAA40 ENSG00000110583 UTR5 Human protein_coding chr11:63706472 chr11:63706481 . . 0 30 hm5C_associated_SNPs_9240 0 0 1 0 1 Ribosome 1 0.500231643941151 1 0.999536712117698 hm5C_site_11664 DeepMRMD:1;iRNA_m5C:0.999536712117698 11665 chr11 63706481 63706481 1 + C T rs549363738 63706484 + 63706464 63706504 41 TTGCAGGGCCGTCCGCTCTGCTGCCGCCGCTGTTGCAGCCA TTGCAGGGCCGTCCGCTTTGCTGCCGCCGCTGTTGCAGCCA < 41bp 1 0.595150775583185 1 0.359370648860931 experiment 0.809698448833631 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA40 ENSG00000110583 UTR5 Human protein_coding chr11:63706484 chr11:63706481 . . 0 18 hm5C_associated_SNPs_9241 0 0 1 0 1 Ribosome 1 0.500231643961586 1 0.999536712076827 hm5C_site_11665 DeepMRMD:1;iRNA_m5C:0.999536712076827 11666 chr11 63706504 63706504 1 + A G rs3903058 63706484 + 63706464 63706504 41 TTGCAGGGCCGTCCGCTCTGCTGCCGCCGCTGTTGCAGCCA TTGCAGGGCCGTCCGCTCTGCTGCCGCCGCTGTTGCAGCCG < 41bp 1 0.528556766048908 1 0.378329634666443 experiment 0.942886467902184 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA40 ENSG00000110583 UTR5 Human protein_coding chr11:63706484 chr11:63706504 . . 0 41 hm5C_associated_SNPs_9242 0 0 1 0 1 Ribosome 1 0.5002316439211 1 0.9995367121578 hm5C_site_11666 DeepMRMD:1;iRNA_m5C:0.9995367121578 11667 chr11 63723945 63723945 1 + A G rs320127 63723957 + 63723937 63723977 41 CACTGGATACGTGGCACCAACTGGTCAATGGGTGCTTGGTG CACTGGATGCGTGGCACCAACTGGTCAATGGGTGCTTGGTG < 41bp 1 0.676926459579923 1 0.243945419788361 experiment 0.646147080840153 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA40 ENSG00000110583 UTR3 Human protein_coding chr11:63723957 chr11:63723945 . . 0 9 hm5C_associated_SNPs_9243 0 0 1 0 0 Ribosome 1 0.500231508539564 1 0.999536982920872 hm5C_site_11667 DeepMRMD:1;iRNA_m5C:0.999536982920872 11668 chr11 63764302 63764302 1 + G C rs7939571 63764315 + 63764295 63764335 41 CCATGCTGGGCCCGCCTTTCCATCCCACCCCCAGGTTCAAG CCATGCTCGGCCCGCCTTTCCATCCCACCCCCAGGTTCAAG < 41bp 1 0.173447717067084 1 0.249467313289642 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OTUB1 ENSG00000167770 intronic Human protein_coding chr11:63764315 chr11:63764302 . . 0 8 hm5C_associated_SNPs_9244 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11668 DeepMRMD:1;iRNA_m5C:0.999536712157815 11669 chr11 63764308 63764308 1 + G A rs7117821 63764315 + 63764295 63764335 41 CCATGCTGGGCCCGCCTTTCCATCCCACCCCCAGGTTCAAG CCATGCTGGGCCCACCTTTCCATCCCACCCCCAGGTTCAAG < 41bp 1 0.17123312436084 1 0.113289833068848 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OTUB1 ENSG00000167770 intronic Human protein_coding chr11:63764315 chr11:63764308 . . 0 14 hm5C_associated_SNPs_9245 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11669 DeepMRMD:1;iRNA_m5C:0.999536712157815 11670 chr11 63971639 63971639 1 + A G rs200565900 63971624 + 63971604 63971644 41 TGTTCATCCCCCCTTCCCTTCGCCCTCATGTGGAAAGAGGA TGTTCATCCCCCCTTCCCTTCGCCCTCATGTGGAAGGAGGA < 41bp 1 0.391900313499817 1 0.765126764774323 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STIP1 ENSG00000168439 UTR3 Human protein_coding chr11:63971624 chr11:63971639 . . 0 36 hm5C_associated_SNPs_9246 0 0 1 0 0 Ribosome 1 0.500231644010708 0.469746470451354 0.999536711978584 hm5C_site_11670 DeepMRMD:0.469746470451354;iRNA_m5C:0.999536711978584 11671 chr11 63994352 63994352 1 + A C rs201932897 63994351 + 63994331 63994371 41 GCCTATTGGCTCTCGGGGGCCACAGCTGCTCCTGCGCCTGG GCCTATTGGCTCTCGGGGGCCCCAGCTGCTCCTGCGCCTGG < 41bp 1 0.345197698492666 1 0.152188330888748 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63994351 chr11:63994352 synonymous SNV . 0 22 hm5C_associated_SNPs_9249 0 0 0 0 0 Ribosome 1 0.5002316439211 1 0.9995367121578 hm5C_site_11671 DeepMRMD:1;iRNA_m5C:0.9995367121578 11672 chr11 63994365 63994365 1 + C T rs201149562 63994351 + 63994331 63994371 41 GCCTATTGGCTCTCGGGGGCCACAGCTGCTCCTGCGCCTGG GCCTATTGGCTCTCGGGGGCCACAGCTGCTCCTGTGCCTGG < 41bp 1 0.590220933266656 1 0.221288084983826 experiment 0.819558133466688 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63994351 chr11:63994365 nonsynonymous SNV 0.439 2 35 hm5C_associated_SNPs_9250 0 0 1 0 0 Ribosome 1 0.500231643978123 1 0.999536712043754 hm5C_site_11672 DeepMRMD:1;iRNA_m5C:0.999536712043754 11673 chr11 63996995 63996995 1 + G T rs185358682 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTGAGTGGTGGACCCGAGGCCCACGAGTCTACAG < 41bp 1 0.435589982712538 1 0.848198175430298 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63996995 synonymous SNV . 0 16 hm5C_associated_SNPs_9251 0 0 0 0 2 Ribosome 1 0.500231648034275 0.303603649139404 0.999536703931449 hm5C_site_11673 DeepMRMD:0.303603649139404;iRNA_m5C:0.999536703931449 11674 chr11 63997329 63997329 1 + A G rs633561 63997328 + 63997308 63997348 41 TTGTCTCCCCACAGAACGTGCAGAGATTGCTCGAGACGGAG TTGTCTCCCCACAGAACGTGCGGAGATTGCTCGAGACGGAG < 41bp 1 0.412693872490584 1 0.211470305919647 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997328 chr11:63997329 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_9252 0 0 0 0 1 Ribosome 1 0.500231630109258 1 0.999536739781484 hm5C_site_11674 DeepMRMD:1;iRNA_m5C:0.999536739781484 11675 chr11 63997338 63997338 1 + T C rs633557 63997328 + 63997308 63997348 41 TTGTCTCCCCACAGAACGTGCAGAGATTGCTCGAGACGGAG TTGTCTCCCCACAGAACGTGCAGAGATTGCCCGAGACGGAG < 41bp 1 0.417004265987063 1 0.110736429691315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997328 chr11:63997338 nonsynonymous SNV 0.166 0 31 hm5C_associated_SNPs_9253 0 0 0 0 1 Ribosome 1 0.500231644163728 1 0.999536711672545 hm5C_site_11675 DeepMRMD:1;iRNA_m5C:0.999536711672545 11676 chr11 64022459 64022459 1 + A G rs632439 64022456 + 64022436 64022476 41 ACGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT ACGGTGGTGTCTGGGCCAGACCCGGTGAACACAGTGTTCTT < 41bp 1 0.595515896868531 1 0.13567578792572 experiment 0.808968206262939 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022456 chr11:64022459 synonymous SNV . 0 24 hm5C_associated_SNPs_9254 0 0 1 0 3 Ribosome 1 0.500231643140222 1 0.999536713719557 hm5C_site_11676 DeepMRMD:1;iRNA_m5C:0.999536713719557 11677 chr11 64022459 64022459 1 + A G rs632439 64022457 + 64022437 64022477 41 CGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTG CGGTGGTGTCTGGGCCAGACCCGGTGAACACAGTGTTCTTG < 41bp 1 0.4716461663343 1 0.641737222671509 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022457 chr11:64022459 synonymous SNV . 0 23 hm5C_associated_SNPs_9255 0 0 1 0 3 Ribosome 1 0.500234002796855 0.716525554656982 0.99953199440629 hm5C_site_11677 DeepMRMD:0.716525554656982;iRNA_m5C:0.99953199440629 11678 chr11 64022459 64022459 1 + A G rs632439 64022458 + 64022438 64022478 41 GGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTGA GGTGGTGTCTGGGCCAGACCCGGTGAACACAGTGTTCTTGA < 41bp 1 0.667029720634702 1 0.793699741363525 experiment 0.665940558730597 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022458 chr11:64022459 synonymous SNV . 0 22 hm5C_associated_SNPs_9256 0 0 1 0 3 Ribosome 1 0.500231642049352 0.41260051727295 0.999536715901296 hm5C_site_11678 DeepMRMD:0.41260051727295;iRNA_m5C:0.999536715901296 11679 chr11 64023875 64023875 1 + G A rs200770371 64023887 + 64023867 64023907 41 TACCTGACGCTGGAGCAGCTCATGGACTTCATCAACCAGAA TACCTGACACTGGAGCAGCTCATGGACTTCATCAACCAGAA < 41bp 1 0.344766396120097 1 0.260107427835464 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64023887 chr11:64023875 synonymous SNV . 0 9 hm5C_associated_SNPs_9257 0 0 0 0 1 Ribosome 1 0.5002316438832 1 0.999536712233601 hm5C_site_11679 DeepMRMD:1;iRNA_m5C:0.999536712233601 11680 chr11 64033454 64033454 1 + G A rs34677667 64033434 + 64033414 64033454 41 ATCAGGAGTTCCAGAACAGACAGGTGCAGAGCCTGCTGGAG ATCAGGAGTTCCAGAACAGACAGGTGCAGAGCCTGCTGGAA < 41bp 1 0.640721046738886 1 0.826090216636658 experiment 0.718557906522228 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64033434 chr11:64033454 synonymous SNV . 0 41 hm5C_associated_SNPs_9258 0 0 1 0 2 Ribosome 1 0.500231643921092 0.347819566726684 0.999536712157815 hm5C_site_11680 DeepMRMD:0.347819566726684;iRNA_m5C:0.999536712157815 11681 chr11 64073058 64073058 1 + G A rs554089174 64073065 + 64073045 64073085 41 CCTACAAGCAGCCGGCGGCGCCGCCGAGTGAGGGGACGCGG CCTACAAGCAGCCAGCGGCGCCGCCGAGTGAGGGGACGCGG < 41bp 1 0.240388959608934 1 0.112871825695038 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ESRRA ENSG00000173153 UTR5 Human protein_coding chr11:64073065 chr11:64073058 . . 0 14 hm5C_associated_SNPs_9259 0 0 0 0 0 Cytosol 1 0.500231643926805 1 0.999536712146389 hm5C_site_11681 DeepMRMD:1;iRNA_m5C:0.999536712146389 11682 chr11 64085785 64085785 1 + A C rs7938623 64085786 + 64085766 64085806 41 GCAGCGGCAGCAAGACGGTACAGTGAAGGAGAGTGGGCGTC GCAGCGGCAGCAAGACGGTCCAGTGAAGGAGAGTGGGCGTC < 41bp 1 0.609453183853867 1 0.436954915523529 experiment 0.781093632292265 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64085786 chr11:64085785 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_9260 0 0 1 0 1 Cytosol 1 0.500231643921064 1 0.999536712157871 hm5C_site_11682 DeepMRMD:1;iRNA_m5C:0.999536712157871 11683 chr11 64118648 64118648 1 + C A rs74794644 64118643 + 64118623 64118663 41 TCCTTGCAGCTGCGCCAGGGCCCCGCGGGGCTGGGGCCCAA TCCTTGCAGCTGCGCCAGGGCCCCGAGGGGCTGGGGCCCAA < 41bp 1 0.34414626679963 1 0.307618260383606 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118643 chr11:64118648 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_9261 0 0 1 0 1 Ribosome 1 0.500231643919737 1 0.999536712160527 hm5C_site_11683 DeepMRMD:1;iRNA_m5C:0.999536712160527 11684 chr11 64118648 64118648 1 + C A rs74794644 64118644 + 64118624 64118664 41 CCTTGCAGCTGCGCCAGGGCCCCGCGGGGCTGGGGCCCAAA CCTTGCAGCTGCGCCAGGGCCCCGAGGGGCTGGGGCCCAAA < 41bp 1 0.638652732247555 1 0.491565108299255 experiment 0.722694535504889 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118644 chr11:64118648 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_9262 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11684 DeepMRMD:1;iRNA_m5C:0.999536712157815 11685 chr11 64118648 64118648 1 + C A rs74794644 64118645 + 64118625 64118665 41 CTTGCAGCTGCGCCAGGGCCCCGCGGGGCTGGGGCCCAAAA CTTGCAGCTGCGCCAGGGCCCCGAGGGGCTGGGGCCCAAAA < 41bp 1 0.344016457781117 1 0.726678848266602 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118645 chr11:64118648 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_9263 0 0 1 0 1 Ribosome 1 0.500231643921103 0.546642303466796 0.999536712157795 hm5C_site_11685 DeepMRMD:0.546642303466796;iRNA_m5C:0.999536712157795 11686 chr11 64118648 64118648 1 + C A rs74794644 64118646 + 64118626 64118666 41 TTGCAGCTGCGCCAGGGCCCCGCGGGGCTGGGGCCCAAAAA TTGCAGCTGCGCCAGGGCCCCGAGGGGCTGGGGCCCAAAAA < 41bp 1 0.696039920172116 1 0.930471420288086 experiment 0.607920159655768 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118646 chr11:64118648 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_9264 0 0 1 0 1 Ribosome 1 0.500231643921111 0.139057159423828 0.999536712157777 hm5C_site_11686 DeepMRMD:0.139057159423828;iRNA_m5C:0.999536712157777 11687 chr11 64118648 64118648 1 + C A rs74794644 64118659 + 64118639 64118679 41 AGGGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCT AGGGCCCCGAGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCT < 41bp 1 0.285406871069536 1 0.222722381353378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118659 chr11:64118648 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_9265 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11687 DeepMRMD:1;iRNA_m5C:0.999536712157815 11688 chr11 64118648 64118648 1 + C A rs74794644 64118660 + 64118640 64118680 41 GGGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCTC GGGCCCCGAGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCTC < 41bp 1 0.280100005710663 1 0.2069251537323 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118660 chr11:64118648 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_9266 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11688 DeepMRMD:1;iRNA_m5C:0.999536712157815 11689 chr11 64118648 64118648 1 + C A rs74794644 64118661 + 64118641 64118681 41 GGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCTCA GGCCCCGAGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCTCA < 41bp 1 0.493430113040393 1 0.782831370830536 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118661 chr11:64118648 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_9267 0 0 1 0 1 Ribosome 1 0.500231643921092 0.434337258338928 0.999536712157815 hm5C_site_11689 DeepMRMD:0.434337258338928;iRNA_m5C:0.999536712157815 11690 chr11 64132904 64132904 1 + C G rs139579817 64132923 + 64132903 64132943 41 GCAGCCCCCCACCTGGGGACCCCCGAATCTTTCAGGTGAGG GGAGCCCCCCACCTGGGGACCCCCGAATCTTTCAGGTGAGG < 41bp 1 0.0998332173244117 1 0.104589462280273 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64132923 chr11:64132904 synonymous SNV . 0 2 hm5C_associated_SNPs_9268 0 0 1 0 1 chromatin 1 0.500231644098165 1 0.999536711803669 hm5C_site_11690 DeepMRMD:1;iRNA_m5C:0.999536711803669 11691 chr11 64138905 64138905 1 + T C rs17857342 64138919 + 64138899 64138939 41 GTCGCCTCCAAAGGGGCCCCCCGCCGAGCCAACGGCCCCCT GTCGCCCCCAAAGGGGCCCCCCGCCGAGCCAACGGCCCCCT < 41bp 1 0.341953499513191 1 0.221201568841934 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64138919 chr11:64138905 nonsynonymous SNV 0.002 0 7 hm5C_associated_SNPs_9269 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_11691 DeepMRMD:1;iRNA_m5C:0.999536712157816 11692 chr11 64693088 64693088 1 + C G rs563266633 64693089 + 64693069 64693109 41 CCCAGGACTGTGGTTGTGCCCCCCCCCCAAAGGCCGGACAG CCCAGGACTGTGGTTGTGCGCCCCCCCCAAAGGCCGGACAG < 41bp 1 0.270762905786066 1 0.0373076200485229 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R5B ENSG00000068971 UTR5 Human protein_coding chr11:64693089 chr11:64693088 . . 0 20 hm5C_associated_SNPs_9270 0 0 0 0 0 Ribosome 1 0.500231643922119 1 0.999536712155761 hm5C_site_11692 DeepMRMD:1;iRNA_m5C:0.999536712155761 11693 chr11 64693088 64693088 1 + C G rs563266633 64693090 + 64693070 64693110 41 CCAGGACTGTGGTTGTGCCCCCCCCCCAAAGGCCGGACAGG CCAGGACTGTGGTTGTGCGCCCCCCCCAAAGGCCGGACAGG < 41bp 1 0.160269066893153 1 0.0867065489292145 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R5B ENSG00000068971 UTR5 Human protein_coding chr11:64693090 chr11:64693088 . . 0 19 hm5C_associated_SNPs_9271 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11693 DeepMRMD:1;iRNA_m5C:0.999536712157815 11694 chr11 64693088 64693088 1 + C G rs563266633 64693091 + 64693071 64693111 41 CAGGACTGTGGTTGTGCCCCCCCCCCAAAGGCCGGACAGGA CAGGACTGTGGTTGTGCGCCCCCCCCAAAGGCCGGACAGGA < 41bp 1 0.176592036304054 1 0.101128399372101 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R5B ENSG00000068971 UTR5 Human protein_coding chr11:64693091 chr11:64693088 . . 0 18 hm5C_associated_SNPs_9272 0 0 0 0 0 Ribosome 1 0.500231643573377 1 0.999536712853246 hm5C_site_11694 DeepMRMD:1;iRNA_m5C:0.999536712853246 11695 chr11 64693088 64693088 1 + C G rs563266633 64693092 + 64693072 64693112 41 AGGACTGTGGTTGTGCCCCCCCCCCAAAGGCCGGACAGGAT AGGACTGTGGTTGTGCGCCCCCCCCAAAGGCCGGACAGGAT < 41bp 1 0.246728656692866 1 0.140596657991409 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R5B ENSG00000068971 UTR5 Human protein_coding chr11:64693092 chr11:64693088 . . 0 17 hm5C_associated_SNPs_9273 0 0 0 0 0 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_11695 DeepMRMD:1;iRNA_m5C:0.999536712157812 11696 chr11 64693088 64693088 1 + C G rs563266633 64693093 + 64693073 64693113 41 GGACTGTGGTTGTGCCCCCCCCCCAAAGGCCGGACAGGATG GGACTGTGGTTGTGCGCCCCCCCCAAAGGCCGGACAGGATG < 41bp 1 0.495177618233324 1 0.393744289875031 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R5B ENSG00000068971 UTR5 Human protein_coding chr11:64693093 chr11:64693088 . . 0 16 hm5C_associated_SNPs_9274 0 0 0 0 0 Ribosome 1 0.500231643920956 1 0.999536712158087 hm5C_site_11696 DeepMRMD:1;iRNA_m5C:0.999536712158087 11697 chr11 64693088 64693088 1 + C G rs563266633 64693094 + 64693074 64693114 41 GACTGTGGTTGTGCCCCCCCCCCAAAGGCCGGACAGGATGG GACTGTGGTTGTGCGCCCCCCCCAAAGGCCGGACAGGATGG < 41bp 1 0.355251715128865 1 0.840671420097351 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R5B ENSG00000068971 UTR5 Human protein_coding chr11:64693094 chr11:64693088 . . 0 15 hm5C_associated_SNPs_9275 0 0 0 0 0 Ribosome 1 0.5002316434 0.318657159805298 0.9995367132 hm5C_site_11697 DeepMRMD:0.318657159805298;iRNA_m5C:0.9995367132 11698 chr11 64693088 64693088 1 + C G rs563266633 64693095 + 64693075 64693115 41 ACTGTGGTTGTGCCCCCCCCCCAAAGGCCGGACAGGATGGG ACTGTGGTTGTGCGCCCCCCCCAAAGGCCGGACAGGATGGG < 41bp 1 0.392928117157135 1 0.754516243934631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R5B ENSG00000068971 UTR5 Human protein_coding chr11:64693095 chr11:64693088 . . 0 14 hm5C_associated_SNPs_9276 0 0 0 0 0 Ribosome 1 0.500231643921492 0.490967512130738 0.999536712157015 hm5C_site_11698 DeepMRMD:0.490967512130738;iRNA_m5C:0.999536712157015 11699 chr11 64693088 64693088 1 + C G rs563266633 64693096 + 64693076 64693116 41 CTGTGGTTGTGCCCCCCCCCCAAAGGCCGGACAGGATGGGA CTGTGGTTGTGCGCCCCCCCCAAAGGCCGGACAGGATGGGA < 41bp 1 0.583682050570384 1 0.697401285171509 experiment 0.832635898859232 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R5B ENSG00000068971 UTR5 Human protein_coding chr11:64693096 chr11:64693088 . . 0 13 hm5C_associated_SNPs_9277 0 0 0 0 0 Ribosome 1 0.500231643435845 0.605197429656982 0.999536713128311 hm5C_site_11699 DeepMRMD:0.605197429656982;iRNA_m5C:0.999536713128311 11700 chr11 64807683 64807683 1 + C T rs181128660 64807698 + 64807678 64807718 41 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCA TTGGCTAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCA < 41bp 1 0.517505799829353 1 0.0591675043106079 experiment 0.964988400341295 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807698 chr11:64807683 . . 0 6 hm5C_associated_SNPs_9278 0 0 0 0 0 exosome 1 0.500231643325577 1 0.999536713348845 hm5C_site_11700 DeepMRMD:1;iRNA_m5C:0.999536713348845 11701 chr11 64807695 64807695 1 + G A rs377178162 64807698 + 64807678 64807718 41 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCA TTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCA < 41bp 1 0.598148578038473 1 0.0616566836833954 experiment 0.803702843923055 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807698 chr11:64807695 . . 0 18 hm5C_associated_SNPs_9279 0 0 0 4 0 exosome 1 0.500231639333684 1 0.999536721332633 hm5C_site_11701 DeepMRMD:1;iRNA_m5C:0.999536721332633 11702 chr11 64807708 64807708 1 + C G rs546593699 64807698 + 64807678 64807718 41 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCA TTGGCCAGGCTGGTCTCGAACTCCTGACCTGAAGTGATCCA < 41bp 1 0.485124302539718 1 0.0808112323284149 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARL2-SNX15 ENSG00000110025;ENSG00000273003 UTR3 Human other chr11:64807698 chr11:64807708 . . 0 31 hm5C_associated_SNPs_9280 0 0 0 4 0 exosome 1 0.500231421256236 1 0.999537157487528 hm5C_site_11702 DeepMRMD:1;iRNA_m5C:0.999537157487528 11703 chr11 64809167 64809167 1 + A G rs10792456 64809168 + 64809148 64809188 41 GGCGCTGGCCACGCTGCTGACCGTAGTGGCGCGGCTCGGGC GGCGCTGGCCACGCTGCTGGCCGTAGTGGCGCGGCTCGGGC < 41bp 1 0.623033501903285 1 0.156548172235489 experiment 0.75393299619343 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAC3D1 ENSG00000168061 CDS Human protein_coding chr11:64809168 chr11:64809167 nonsynonymous SNV 0.934 0 20 hm5C_associated_SNPs_9281 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_11703 DeepMRMD:1;iRNA_m5C:0.999536712157815 11704 chr11 64809167 64809167 1 + A G rs10792456 64809179 + 64809159 64809199 41 CGCTGCTGACCGTAGTGGCGCGGCTCGGGCCCGACGCGGCG CGCTGCTGGCCGTAGTGGCGCGGCTCGGGCCCGACGCGGCG < 41bp 1 0.526950829553747 1 0.334564805030823 experiment 0.946098340892506 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAC3D1 ENSG00000168061 CDS Human protein_coding chr11:64809179 chr11:64809167 nonsynonymous SNV 0.934 0 9 hm5C_associated_SNPs_9282 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11704 DeepMRMD:1;iRNA_m5C:0.999536712157815 11705 chr11 64879480 64879480 1 + C T rs182060338 64879492 + 64879472 64879512 41 CGGCGGAGCGGAGACCATGGCCCCCACTCAGGGCCCCCGGG CGGCGGAGTGGAGACCATGGCCCCCACTCAGGGCCCCCGGG < 41bp 1 0.149607688138056 1 0.141787767410278 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM7SF2 ENSG00000149809 UTR5 Human protein_coding chr11:64879492 chr11:64879480 . . 0 9 hm5C_associated_SNPs_9283 0 0 1 0 1 Ribosome 1 0.500250937651998 1 0.999498124696004 hm5C_site_11705 DeepMRMD:1;iRNA_m5C:0.999498124696004 11706 chr11 64885102 64885102 1 + G A rs34393594 64885118 - 64885098 64885138 41 GGTGCCAGTTGCCATGGAGCCGGCCGGGCCCTGTGGCTTCT GGTGCCAGTTGCCATGGAGCCGGCCGGGCCCTGTGGTTTCT < 41bp 1 0.635641659970093 1 0.681752562522888 experiment 0.728716680059814 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNHIT2 ENSG00000174276 CDS Human protein_coding chr11:64885118 chr11:64885102 synonymous SNV . 0 37 hm5C_associated_SNPs_9287 0 0 1 0 0 Ribosome 1 0.500231643921092 0.636494874954224 0.999536712157815 hm5C_site_11706 DeepMRMD:0.636494874954224;iRNA_m5C:0.999536712157815 11707 chr11 64885102 64885102 1 + G A rs34393594 64885119 - 64885099 64885139 41 CGGTGCCAGTTGCCATGGAGCCGGCCGGGCCCTGTGGCTTC CGGTGCCAGTTGCCATGGAGCCGGCCGGGCCCTGTGGTTTC < 41bp 1 0.455384097384601 1 0.636725306510925 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNHIT2 ENSG00000174276 CDS Human protein_coding chr11:64885119 chr11:64885102 synonymous SNV . 0 38 hm5C_associated_SNPs_9288 0 0 1 0 0 Ribosome 1 0.500231644000266 0.72654938697815 0.999536711999469 hm5C_site_11707 DeepMRMD:0.72654938697815;iRNA_m5C:0.999536711999469 11708 chr11 64885138 64885138 1 + C G rs115738452 64885118 - 64885098 64885138 41 GGTGCCAGTTGCCATGGAGCCGGCCGGGCCCTGTGGCTTCT CGTGCCAGTTGCCATGGAGCCGGCCGGGCCCTGTGGCTTCT < 41bp 1 0.646992666290587 1 0.644603073596954 experiment 0.706014667418826 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNHIT2 ENSG00000174276 UTR5 Human protein_coding chr11:64885118 chr11:64885138 . . 0 1 hm5C_associated_SNPs_9289 0 0 1 0 0 Ribosome 1 0.500231643921092 0.710793852806092 0.999536712157815 hm5C_site_11708 DeepMRMD:0.710793852806092;iRNA_m5C:0.999536712157815 11709 chr11 64885138 64885138 1 + C G rs115738452 64885119 - 64885099 64885139 41 CGGTGCCAGTTGCCATGGAGCCGGCCGGGCCCTGTGGCTTC CCGTGCCAGTTGCCATGGAGCCGGCCGGGCCCTGTGGCTTC < 41bp 1 0.525065796457678 1 0.683966815471649 experiment 0.949868407084644 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNHIT2 ENSG00000174276 UTR5 Human protein_coding chr11:64885119 chr11:64885138 . . 0 2 hm5C_associated_SNPs_9290 0 0 1 0 0 Ribosome 1 0.500231644229142 0.632066369056702 0.999536711541716 hm5C_site_11709 DeepMRMD:0.632066369056702;iRNA_m5C:0.999536711541716 11710 chr11 64950970 64950970 1 + C G rs17583 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTCTTGGCGGCCATGGCCTCCCTCACTCTCAA < 41bp 1 0.389570174837439 1 0.234102785587311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950970 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_9291 0 0 1 0 2 Ribosome 1 0.50023164393197 1 0.999536712136059 hm5C_site_11710 DeepMRMD:1;iRNA_m5C:0.999536712136059 11711 chr11 64979046 64979046 1 + C T rs187717697 64979043 + 64979023 64979063 41 TTGTTCCTGCCTCGGGACAGCCCCGGGTTTCCCCAGCATCC TTGTTCCTGCCTCGGGACAGCCCTGGGTTTCCCCAGCATCC < 41bp 1 0.270651892157862 1 0.170636862516403 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 UTR3 Human protein_coding chr11:64979043 chr11:64979046 . . 0 24 hm5C_associated_SNPs_9292 0 0 1 0 0 Ribosome 1 0.50023164392117 1 0.99953671215766 hm5C_site_11711 DeepMRMD:1;iRNA_m5C:0.99953671215766 11712 chr11 64979061 64979061 1 + T A rs552659092 64979043 + 64979023 64979063 41 TTGTTCCTGCCTCGGGACAGCCCCGGGTTTCCCCAGCATCC TTGTTCCTGCCTCGGGACAGCCCCGGGTTTCCCCAGCAACC < 41bp 1 0.395091874776646 1 0.242812693119049 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 UTR3 Human protein_coding chr11:64979043 chr11:64979061 . . 0 39 hm5C_associated_SNPs_9293 0 0 1 0 0 Ribosome 1 0.500231643921109 1 0.999536712157781 hm5C_site_11712 DeepMRMD:1;iRNA_m5C:0.999536712157781 11713 chr11 65063455 65063455 1 + C T rs34997862 65063444 + 65063424 65063464 41 TCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGAAGGTA TCCTCATCATCCCGTCAGAGCTGAGGTACTTTGTGAAGGTA < 41bp 1 0.375710316429751 1 0.169110208749771 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65063444 chr11:65063455 synonymous SNV . 0 32 hm5C_associated_SNPs_9294 0 0 1 0 1 Endoplasmic reticulum 1 0.500232528481831 1 0.999534943036339 hm5C_site_11713 DeepMRMD:1;iRNA_m5C:0.999534943036339 11714 chr11 65178992 65178992 1 + G A rs557821801 65178999 + 65178979 65179019 41 TTTTGGGCCCGGGGCCATGCCCGGGCTGTGCAAAGCTGGCC TTTTGGGCCCGGGACCATGCCCGGGCTGTGCAAAGCTGGCC < 41bp 1 0.601121812308495 1 0.360258340835571 experiment 0.79775637538301 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control FRMD8 ENSG00000126391 UTR3 Human protein_coding chr11:65178999 chr11:65178992 . . 0 14 hm5C_associated_SNPs_9295 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11714 DeepMRMD:1;iRNA_m5C:0.999536712157815 11715 chr11 65179001 65179001 1 + G A rs540302490 65178999 + 65178979 65179019 41 TTTTGGGCCCGGGGCCATGCCCGGGCTGTGCAAAGCTGGCC TTTTGGGCCCGGGGCCATGCCCAGGCTGTGCAAAGCTGGCC < 41bp 1 0.522328909760957 1 0.475449293851852 experiment 0.955342180478086 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control FRMD8 ENSG00000126391 UTR3 Human protein_coding chr11:65178999 chr11:65179001 . . 0 23 hm5C_associated_SNPs_9296 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11715 DeepMRMD:1;iRNA_m5C:0.999536712157815 11716 chr11 65179416 65179416 1 + A G rs79588035 65179407 + 65179387 65179427 41 TCTGAGGAGGGTAGGAGGGGCCTCCCTGGATTGAACCGGGA TCTGAGGAGGGTAGGAGGGGCCTCCCTGGGTTGAACCGGGA < 41bp 1 0.0658201118862929 1 0.148212671279907 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD8 ENSG00000126391 UTR3 Human protein_coding chr11:65179407 chr11:65179416 . . 0 30 hm5C_associated_SNPs_9297 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11716 DeepMRMD:1;iRNA_m5C:0.999536712157815 11717 chr11 65180536 65180536 1 + C T rs148625495 65180523 + 65180503 65180543 41 CTGTTGCCCAGGCAGGAGTGCAGTGGCGCATCTCGGCTCAC CTGTTGCCCAGGCAGGAGTGCAGTGGCGCATCTTGGCTCAC < 41bp 1 0.378205358322751 1 0.264200508594513 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FRMD8 ENSG00000126391 UTR3 Human protein_coding chr11:65180523 chr11:65180536 . . 0 34 hm5C_associated_SNPs_9298 0 0 1 0 0 Ribosome 1 0.500231643921087 1 0.999536712157827 hm5C_site_11717 DeepMRMD:1;iRNA_m5C:0.999536712157827 11718 chr11 65180536 65180536 1 + C T rs148625495 65180529 + 65180509 65180549 41 CCCAGGCAGGAGTGCAGTGGCGCATCTCGGCTCACTGCAAC CCCAGGCAGGAGTGCAGTGGCGCATCTTGGCTCACTGCAAC < 41bp 1 0.486256144452407 1 0.319924503564835 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FRMD8 ENSG00000126391 UTR3 Human protein_coding chr11:65180529 chr11:65180536 . . 0 28 hm5C_associated_SNPs_9299 0 0 1 0 0 Ribosome 1 0.500231643567098 1 0.999536712865803 hm5C_site_11718 DeepMRMD:1;iRNA_m5C:0.999536712865803 11719 chr11 65180604 65180604 1 + T A rs11551353 65180623 + 65180603 65180643 41 GTGCATGCCACCAGGCCCCGCTGATTTTTGTATTTTTAGTA GAGCATGCCACCAGGCCCCGCTGATTTTTGTATTTTTAGTA < 41bp 1 0.181367470642203 1 0.133754372596741 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FRMD8 ENSG00000126391 UTR3 Human protein_coding chr11:65180623 chr11:65180604 . . 0 2 hm5C_associated_SNPs_9301 0 0 1 0 0 Ribosome 1 0.500231643919547 1 0.999536712160907 hm5C_site_11719 DeepMRMD:1;iRNA_m5C:0.999536712160907 11720 chr11 65180613 65180613 1 + C T rs147500819 65180623 + 65180603 65180643 41 GTGCATGCCACCAGGCCCCGCTGATTTTTGTATTTTTAGTA GTGCATGCCATCAGGCCCCGCTGATTTTTGTATTTTTAGTA < 41bp 1 0.180836787776263 1 0.142960220575333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FRMD8 ENSG00000126391 UTR3 Human protein_coding chr11:65180623 chr11:65180613 . . 0 11 hm5C_associated_SNPs_9302 0 0 1 0 0 Ribosome 1 0.500231642181777 1 0.999536715636445 hm5C_site_11720 DeepMRMD:1;iRNA_m5C:0.999536715636445 11721 chr11 65190887 65190887 1 + C A rs79376422 65190874 + 65190854 65190894 41 GGTATGTAATTTTCGCTCGGCCTGGGACGGGGCCCAGGCCG GGTATGTAATTTTCGCTCGGCCTGGGACGGGGCACAGGCCG < 41bp 1 0.235524907211468 1 0.241807460784912 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190874 chr11:65190887 . . 0 34 hm5C_associated_SNPs_9303 0 0 1 1 0 unknown 1 0.500231643921082 1 0.999536712157835 hm5C_site_11721 DeepMRMD:1;iRNA_m5C:0.999536712157835 11722 chr11 65190887 65190887 1 + C A rs79376422 65190886 + 65190866 65190906 41 TCGCTCGGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGG TCGCTCGGCCTGGGACGGGGCACAGGCCGGGCCCAGCCTGG < 41bp 1 0.524728984108208 1 0.541712641716003 experiment 0.950542031783584 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190886 chr11:65190887 . . 0 22 hm5C_associated_SNPs_9304 0 0 1 1 0 unknown 1 0.50023164392123 0.916574716567994 0.99953671215754 hm5C_site_11722 DeepMRMD:0.916574716567994;iRNA_m5C:0.99953671215754 11723 chr11 65190887 65190887 1 + C A rs79376422 65190888 + 65190868 65190908 41 GCTCGGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGTG GCTCGGCCTGGGACGGGGCACAGGCCGGGCCCAGCCTGGTG < 41bp 1 0.630980922438571 1 0.499689549207687 experiment 0.738038155122859 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190888 chr11:65190887 . . 0 20 hm5C_associated_SNPs_9305 0 0 1 1 0 unknown 1 0.50023164399486 1 0.999536712010279 hm5C_site_11723 DeepMRMD:1;iRNA_m5C:0.999536712010279 11724 chr11 65190887 65190887 1 + C A rs79376422 65190892 + 65190872 65190912 41 GGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGC GGCCTGGGACGGGGCACAGGCCGGGCCCAGCCTGGTGGAGC < 41bp 1 0.588664024243135 1 0.817917346954346 experiment 0.82267195151373 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190892 chr11:65190887 . . 0 16 hm5C_associated_SNPs_9306 0 0 1 1 0 unknown 1 0.50023164435962 0.364165306091308 0.999536711280761 hm5C_site_11724 DeepMRMD:0.364165306091308;iRNA_m5C:0.999536711280761 11725 chr11 65190887 65190887 1 + C A rs79376422 65190893 + 65190873 65190913 41 GCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCG GCCTGGGACGGGGCACAGGCCGGGCCCAGCCTGGTGGAGCG < 41bp 1 0.642588093536376 1 0.85949695110321 experiment 0.714823812927247 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190893 chr11:65190887 . . 0 15 hm5C_associated_SNPs_9307 0 0 1 1 0 unknown 1 0.500231643988152 0.28100609779358 0.999536712023696 hm5C_site_11725 DeepMRMD:0.28100609779358;iRNA_m5C:0.999536712023696 11726 chr11 65190887 65190887 1 + C A rs79376422 65190897 + 65190877 65190917 41 GGGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCGTCCA GGGACGGGGCACAGGCCGGGCCCAGCCTGGTGGAGCGTCCA < 41bp 1 0.262981941851825 1 0.108483761548996 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190897 chr11:65190887 . . 0 11 hm5C_associated_SNPs_9308 0 0 1 1 0 unknown 1 0.500231643921091 1 0.999536712157817 hm5C_site_11726 DeepMRMD:1;iRNA_m5C:0.999536712157817 11727 chr11 65190887 65190887 1 + C A rs79376422 65190898 + 65190878 65190918 41 GGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCGTCCAG GGACGGGGCACAGGCCGGGCCCAGCCTGGTGGAGCGTCCAG < 41bp 1 0.309601311889283 1 0.111527174711227 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190898 chr11:65190887 . . 0 10 hm5C_associated_SNPs_9309 0 0 1 1 0 unknown 1 0.500231643950536 1 0.999536712098928 hm5C_site_11727 DeepMRMD:1;iRNA_m5C:0.999536712098928 11728 chr11 65190887 65190887 1 + C A rs79376422 65190899 + 65190879 65190919 41 GACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCGTCCAGG GACGGGGCACAGGCCGGGCCCAGCCTGGTGGAGCGTCCAGG < 41bp 1 0.420154131569223 1 0.0944487750530243 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190899 chr11:65190887 . . 0 9 hm5C_associated_SNPs_9310 0 0 1 1 0 unknown 1 0.500231643921578 1 0.999536712156844 hm5C_site_11728 DeepMRMD:1;iRNA_m5C:0.999536712156844 11729 chr11 65190894 65190894 1 + G A rs144837246 65190874 + 65190854 65190894 41 GGTATGTAATTTTCGCTCGGCCTGGGACGGGGCCCAGGCCG GGTATGTAATTTTCGCTCGGCCTGGGACGGGGCCCAGGCCA < 41bp 1 0.260346218983248 1 0.368498086929321 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190874 chr11:65190894 . . 0 41 hm5C_associated_SNPs_9311 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157811 hm5C_site_11729 DeepMRMD:1;iRNA_m5C:0.999536712157811 11730 chr11 65190894 65190894 1 + G A rs144837246 65190886 + 65190866 65190906 41 TCGCTCGGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGG TCGCTCGGCCTGGGACGGGGCCCAGGCCAGGCCCAGCCTGG < 41bp 1 0.258635697270207 1 0.32276976108551 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190886 chr11:65190894 . . 0 29 hm5C_associated_SNPs_9312 0 0 1 0 0 unknown 1 0.50023164392111 1 0.999536712157781 hm5C_site_11730 DeepMRMD:1;iRNA_m5C:0.999536712157781 11731 chr11 65190894 65190894 1 + G A rs144837246 65190887 + 65190867 65190907 41 CGCTCGGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGT CGCTCGGCCTGGGACGGGGCCCAGGCCAGGCCCAGCCTGGT < 41bp 1 0.283859714465823 1 0.636794149875641 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190887 chr11:65190894 . . 0 28 hm5C_associated_SNPs_9313 0 0 1 0 0 unknown 1 0.500231644063425 0.726411700248718 0.99953671187315 hm5C_site_11731 DeepMRMD:0.726411700248718;iRNA_m5C:0.99953671187315 11732 chr11 65190894 65190894 1 + G A rs144837246 65190888 + 65190868 65190908 41 GCTCGGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGTG GCTCGGCCTGGGACGGGGCCCAGGCCAGGCCCAGCCTGGTG < 41bp 1 0.626524989106298 1 0.733105659484863 experiment 0.746950021787403 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190888 chr11:65190894 . . 0 27 hm5C_associated_SNPs_9314 0 0 1 0 0 unknown 1 0.500231643926819 0.533788681030274 0.999536712146361 hm5C_site_11732 DeepMRMD:0.533788681030274;iRNA_m5C:0.999536712146361 11733 chr11 65190894 65190894 1 + G A rs144837246 65190892 + 65190872 65190912 41 GGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGC GGCCTGGGACGGGGCCCAGGCCAGGCCCAGCCTGGTGGAGC < 41bp 1 0.412906335627112 1 0.597708523273468 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190892 chr11:65190894 . . 0 23 hm5C_associated_SNPs_9315 0 0 1 0 0 unknown 1 0.500231643920851 0.804582953453064 0.999536712158297 hm5C_site_11733 DeepMRMD:0.804582953453064;iRNA_m5C:0.999536712158297 11734 chr11 65190894 65190894 1 + G A rs144837246 65190893 + 65190873 65190913 41 GCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCG GCCTGGGACGGGGCCCAGGCCAGGCCCAGCCTGGTGGAGCG < 41bp 1 0.594230229169059 1 0.728268623352051 experiment 0.811539541661883 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190893 chr11:65190894 . . 0 22 hm5C_associated_SNPs_9316 0 0 1 0 0 unknown 1 0.500231643921092 0.543462753295898 0.999536712157815 hm5C_site_11734 DeepMRMD:0.543462753295898;iRNA_m5C:0.999536712157815 11735 chr11 65190894 65190894 1 + G A rs144837246 65190897 + 65190877 65190917 41 GGGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCGTCCA GGGACGGGGCCCAGGCCAGGCCCAGCCTGGTGGAGCGTCCA < 41bp 1 0.328478491049268 1 0.0762658715248108 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190897 chr11:65190894 . . 0 18 hm5C_associated_SNPs_9317 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11735 DeepMRMD:1;iRNA_m5C:0.999536712157815 11736 chr11 65190894 65190894 1 + G A rs144837246 65190898 + 65190878 65190918 41 GGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCGTCCAG GGACGGGGCCCAGGCCAGGCCCAGCCTGGTGGAGCGTCCAG < 41bp 1 0.352483288913982 1 0.131757497787476 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190898 chr11:65190894 . . 0 17 hm5C_associated_SNPs_9318 0 0 1 0 0 unknown 1 0.500231643921101 1 0.999536712157798 hm5C_site_11736 DeepMRMD:1;iRNA_m5C:0.999536712157798 11737 chr11 65190894 65190894 1 + G A rs144837246 65190899 + 65190879 65190919 41 GACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCGTCCAGG GACGGGGCCCAGGCCAGGCCCAGCCTGGTGGAGCGTCCAGG < 41bp 1 0.406671188200434 1 0.077030211687088 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65190899 chr11:65190894 . . 0 16 hm5C_associated_SNPs_9319 0 0 1 0 0 unknown 1 0.500231643920894 1 0.999536712158213 hm5C_site_11737 DeepMRMD:1;iRNA_m5C:0.999536712158213 11738 chr11 65191922 65191922 1 + A G rs1938689 65191928 + 65191908 65191948 41 TTGATGCCTTGTAGATGGAGCTTGCAGATGGAGCCCCGTGA TTGATGCCTTGTAGGTGGAGCTTGCAGATGGAGCCCCGTGA < 41bp 1 0.0632315780860177 1 0.101286560297012 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65191928 chr11:65191922 . . 0 15 hm5C_associated_SNPs_9320 0 0 1 0 0 unknown 1 0.500231643835637 1 0.999536712328726 hm5C_site_11738 DeepMRMD:1;iRNA_m5C:0.999536712328726 11739 chr11 65199635 65199635 1 + C T rs192076013 65199650 + 65199630 65199670 41 ACTCTCCTTTGGGTAGATACCCAGTAGTGGGATTGCTGGAT ACTCTTCTTTGGGTAGATACCCAGTAGTGGGATTGCTGGAT < 41bp 1 0.0572440681815212 1 0.655812084674835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEAT1 ENSG00000245532 ncRNA_exonic Human lincRNA chr11:65199650 chr11:65199635 . . 0 6 hm5C_associated_SNPs_9321 0 0 1 1 0 unknown 1 0.500231643911725 0.68837583065033 0.99953671217655 hm5C_site_11739 DeepMRMD:0.68837583065033;iRNA_m5C:0.99953671217655 11740 chr11 65267108 65267108 1 + T C rs11540782 65267103 + 65267083 65267123 41 TTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGT TTGGGAGTGGTAGGATGAAACAATTCGGAGAAGATAGAAGT < 41bp 1 0.16668851376012 1 0.53546530008316 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267103 chr11:65267108 . . 0 26 hm5C_associated_SNPs_9322 0 0 1 2 0 unknown 1 0.500231644039613 0.92906939983368 0.999536711920774 hm5C_site_11740 DeepMRMD:0.92906939983368;iRNA_m5C:0.999536711920774 11741 chr11 65267965 65267965 1 + C T rs181032965 65267961 + 65267941 65267981 41 ATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTC ATGAAGCTAGGACTGAGGAGCAAGTGAGCAAGCAGCAGTTC < 41bp 1 0.683773052960088 1 0.228575855493546 experiment 0.632453894079824 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267961 chr11:65267965 . . 0 25 hm5C_associated_SNPs_9325 0 0 1 0 0 unknown 1 0.500231644809026 1 0.999536710381947 hm5C_site_11741 DeepMRMD:1;iRNA_m5C:0.999536710381947 11742 chr11 65268198 65268198 1 + G A rs7927113 65268185 + 65268165 65268205 41 AGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGT AGGCGTTGTGCGTAGAGGATCCTAGACCAGCATACCAGTGT < 41bp 1 0.223459893830076 1 0.120077013969421 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268185 chr11:65268198 . . 0 34 hm5C_associated_SNPs_9326 0 0 1 3 0 unknown 1 0.500231630025915 1 0.999536739948169 hm5C_site_11742 DeepMRMD:1;iRNA_m5C:0.999536739948169 11743 chr11 65268198 65268198 1 + G A rs7927113 65268191 + 65268171 65268211 41 TGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAG TGTGCGTAGAGGATCCTAGACCAGCATACCAGTGTGCCAAG < 41bp 1 0.483762664884478 1 0.084882527589798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268191 chr11:65268198 . . 0 28 hm5C_associated_SNPs_9327 0 0 1 3 0 unknown 1 0.500232909362681 1 0.999534181274637 hm5C_site_11743 DeepMRMD:1;iRNA_m5C:0.999534181274637 11744 chr11 65268198 65268198 1 + G A rs7927113 65268195 + 65268175 65268215 41 CGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCA CGTAGAGGATCCTAGACCAGCATACCAGTGTGCCAAGGCCA < 41bp 1 0.184441705291428 1 0.0403631627559662 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268195 chr11:65268198 . . 0 24 hm5C_associated_SNPs_9328 0 0 1 3 0 unknown 1 0.500231336478916 1 0.999537327042167 hm5C_site_11744 DeepMRMD:1;iRNA_m5C:0.999537327042167 11745 chr11 65268198 65268198 1 + G A rs7927113 65268207 + 65268187 65268227 41 TAGACCAGCATGCCAGTGTGCCAAGGCCACAGGGAAAGCGA TAGACCAGCATACCAGTGTGCCAAGGCCACAGGGAAAGCGA < 41bp 1 0.386108097464826 1 0.196993678808212 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268207 chr11:65268198 . . 0 12 hm5C_associated_SNPs_9329 0 0 1 3 0 unknown 1 0.500231643834102 1 0.999536712331795 hm5C_site_11745 DeepMRMD:1;iRNA_m5C:0.999536712331795 11746 chr11 65273622 65273622 1 + G A rs576087101 65273607 + 65273587 65273627 41 AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTT AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACAGGGTT < 41bp 1 0.416627019630363 1 0.471578925848007 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273607 chr11:65273622 . . 0 36 hm5C_associated_SNPs_9331 0 0 1 1 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_11746 DeepMRMD:1;iRNA_m5C:0.999536712157815 11747 chr11 65273622 65273622 1 + G A rs576087101 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACAGGGTTC < 41bp 1 0.604444893205852 1 0.48534032702446 experiment 0.791110213588297 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273622 . . 0 35 hm5C_associated_SNPs_9332 0 0 1 1 0 unknown 1 0.500231644237168 1 0.999536711525664 hm5C_site_11747 DeepMRMD:1;iRNA_m5C:0.999536711525664 11748 chr11 65292585 65292585 1 + C G rs376947297 65292572 + 65292552 65292592 41 CCGCCCCGCCCCGGCTCGGGCGGCCGGAGGACCCGGAGCTA CCGCCCCGCCCCGGCTCGGGCGGCCGGAGGACCGGGAGCTA < 41bp 1 0.669197729719528 1 0.6790611743927 experiment 0.661604540560944 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SCYL1 ENSG00000142186 UTR5 Human protein_coding chr11:65292572 chr11:65292585 . . 0 34 hm5C_associated_SNPs_9333 0 0 1 0 0 Ribosome 1 0.500231643921092 0.6418776512146 0.999536712157815 hm5C_site_11748 DeepMRMD:0.6418776512146;iRNA_m5C:0.999536712157815 11749 chr11 65338930 65338930 1 + C A rs538598804 65338926 + 65338906 65338946 41 CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGC CTGGCCTCAGCCTCAGAGCTCCCCATGGGCTCTCGACCTGC < 41bp 1 0.693776804293176 1 0.0678026378154755 experiment 0.612446391413648 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338926 chr11:65338930 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_9334 0 0 0 0 1 Cytosol 1 0.500231642787866 1 0.999536714424267 hm5C_site_11749 DeepMRMD:1;iRNA_m5C:0.999536714424267 11750 chr11 65338944 65338944 1 + T G rs2236684 65338926 + 65338906 65338946 41 CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGC CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCGGC < 41bp 1 0.263611678759138 1 0.0414341986179352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338926 chr11:65338944 synonymous SNV . 0 39 hm5C_associated_SNPs_9335 0 0 0 0 1 Cytosol 1 0.500231637155616 1 0.999536725688769 hm5C_site_11750 DeepMRMD:1;iRNA_m5C:0.999536725688769 11751 chr11 65341405 65341405 1 + G A rs543598842 65341401 + 65341381 65341421 41 CTCAGCCTTGCGGTGGGGCCCGAAGCATCTTCCCTTCCGCT CTCAGCCTTGCGGTGGGGCCCGAAACATCTTCCCTTCCGCT < 41bp 1 0.520556022897277 1 0.372267246246338 experiment 0.958887954205445 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM89B ENSG00000173465;ENSG00000176973 UTR3 Human other chr11:65341401 chr11:65341405 . . 0 25 hm5C_associated_SNPs_9337 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_11751 DeepMRMD:1;iRNA_m5C:0.999536712157815 11752 chr11 65352918 65352918 1 + G A rs185143614 65352925 + 65352905 65352945 41 ACGGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGC ACGGGGAGCCCGGATCGGTGCCCCCGCCCCGCGCGCACGGC < 41bp 1 0.175016227892929 1 0.0831502377986908 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352925 chr11:65352918 synonymous SNV . 0 14 hm5C_associated_SNPs_9338 0 0 1 0 0 chromatin 1 0.50023127628869 1 0.999537447422619 hm5C_site_11752 DeepMRMD:1;iRNA_m5C:0.999537447422619 11753 chr11 65352918 65352918 1 + G A rs185143614 65352926 + 65352906 65352946 41 CGGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCT CGGGGAGCCCGGATCGGTGCCCCCGCCCCGCGCGCACGGCT < 41bp 1 0.248231116440495 1 0.0968926846981049 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352926 chr11:65352918 synonymous SNV . 0 13 hm5C_associated_SNPs_9339 0 0 1 0 0 chromatin 1 0.500231663506897 1 0.999536672986207 hm5C_site_11753 DeepMRMD:1;iRNA_m5C:0.999536672986207 11754 chr11 65352918 65352918 1 + G A rs185143614 65352927 + 65352907 65352947 41 GGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTC GGGGAGCCCGGATCGGTGCCCCCGCCCCGCGCGCACGGCTC < 41bp 1 0.268496969020553 1 0.120733231306076 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352927 chr11:65352918 synonymous SNV . 0 12 hm5C_associated_SNPs_9340 0 0 1 0 0 chromatin 1 0.500230591028339 1 0.999538817943322 hm5C_site_11754 DeepMRMD:1;iRNA_m5C:0.999538817943322 11755 chr11 65352918 65352918 1 + G A rs185143614 65352928 + 65352908 65352948 41 GGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCC GGGAGCCCGGATCGGTGCCCCCGCCCCGCGCGCACGGCTCC < 41bp 1 0.164624867987784 1 0.29462131857872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352928 chr11:65352918 synonymous SNV . 0 11 hm5C_associated_SNPs_9341 0 0 1 0 0 chromatin 1 0.500233904150961 1 0.999532191698079 hm5C_site_11755 DeepMRMD:1;iRNA_m5C:0.999532191698079 11756 chr11 65352918 65352918 1 + G A rs185143614 65352929 + 65352909 65352949 41 GGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCT GGAGCCCGGATCGGTGCCCCCGCCCCGCGCGCACGGCTCCT < 41bp 1 0.390992523024629 1 0.370498836040497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352929 chr11:65352918 synonymous SNV . 0 10 hm5C_associated_SNPs_9342 0 0 1 0 0 chromatin 1 0.500231613380177 1 0.999536773239646 hm5C_site_11756 DeepMRMD:1;iRNA_m5C:0.999536773239646 11757 chr11 65352918 65352918 1 + G A rs185143614 65352931 + 65352911 65352951 41 AGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTC AGCCCGGATCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTC < 41bp 1 0.379399517319321 1 0.218659788370132 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352931 chr11:65352918 synonymous SNV . 0 8 hm5C_associated_SNPs_9343 0 0 1 0 0 chromatin 1 0.500236790032403 1 0.999526419935194 hm5C_site_11757 DeepMRMD:1;iRNA_m5C:0.999526419935194 11758 chr11 65352918 65352918 1 + G A rs185143614 65352932 + 65352912 65352952 41 GCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTCT GCCCGGATCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTCT < 41bp 1 0.27203969134139 1 0.524928212165833 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352932 chr11:65352918 synonymous SNV . 0 7 hm5C_associated_SNPs_9344 0 0 1 0 0 chromatin 1 0.500231643921092 0.950143575668334 0.999536712157815 hm5C_site_11758 DeepMRMD:0.950143575668334;iRNA_m5C:0.999536712157815 Heel bone mineral density 11759 chr11 65352918 65352918 1 + G A rs185143614 65352933 + 65352913 65352953 41 CCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTCTC CCCGGATCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTCTC < 41bp 1 0.465713470062332 1 0.406751304864883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352933 chr11:65352918 synonymous SNV . 0 6 hm5C_associated_SNPs_9345 0 0 1 0 0 chromatin 1 0.500232025974576 1 0.999535948050849 hm5C_site_11759 DeepMRMD:1;iRNA_m5C:0.999535948050849 11760 chr11 65352918 65352918 1 + G A rs185143614 65352934 + 65352914 65352954 41 CCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTCTCC CCGGATCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTCTCC < 41bp 1 0.565633492378702 1 0.826036691665649 experiment 0.868733015242595 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352934 chr11:65352918 synonymous SNV . 0 5 hm5C_associated_SNPs_9346 0 0 1 0 0 chromatin 1 0.500231643921092 0.347926616668702 0.999536712157815 hm5C_site_11760 DeepMRMD:0.347926616668702;iRNA_m5C:0.999536712157815 11761 chr11 65352939 65352939 1 + G A rs373052924 65352925 + 65352905 65352945 41 ACGGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGC ACGGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCACACGGC < 41bp 1 0.20361552613393 1 0.147020429372787 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352925 chr11:65352939 synonymous SNV . 0 35 hm5C_associated_SNPs_9347 0 0 1 0 0 chromatin 1 0.500231630078653 1 0.999536739842693 hm5C_site_11761 DeepMRMD:1;iRNA_m5C:0.999536739842693 11762 chr11 65352939 65352939 1 + G A rs373052924 65352926 + 65352906 65352946 41 CGGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCT CGGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCACACGGCT < 41bp 1 0.277750292715973 1 0.168738633394241 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352926 chr11:65352939 synonymous SNV . 0 34 hm5C_associated_SNPs_9348 0 0 1 0 0 chromatin 1 0.500231644408439 1 0.999536711183121 hm5C_site_11762 DeepMRMD:1;iRNA_m5C:0.999536711183121 11763 chr11 65352939 65352939 1 + G A rs373052924 65352927 + 65352907 65352947 41 GGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTC GGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCACACGGCTC < 41bp 1 0.314405980739842 1 0.227662682533264 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352927 chr11:65352939 synonymous SNV . 0 33 hm5C_associated_SNPs_9349 0 0 1 0 0 chromatin 1 0.500229619204138 1 0.999540761591725 hm5C_site_11763 DeepMRMD:1;iRNA_m5C:0.999540761591725 11764 chr11 65352939 65352939 1 + G A rs373052924 65352928 + 65352908 65352948 41 GGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCC GGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCACACGGCTCC < 41bp 1 0.171635020068459 1 0.35381668806076 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352928 chr11:65352939 synonymous SNV . 0 32 hm5C_associated_SNPs_9350 0 0 1 0 0 chromatin 1 0.500231706364638 1 0.999536587270723 hm5C_site_11764 DeepMRMD:1;iRNA_m5C:0.999536587270723 11765 chr11 65352939 65352939 1 + G A rs373052924 65352929 + 65352909 65352949 41 GGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCT GGAGCCCGGGTCGGTGCCCCCGCCCCGCGCACACGGCTCCT < 41bp 1 0.465799805791766 1 0.328014016151428 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352929 chr11:65352939 synonymous SNV . 0 31 hm5C_associated_SNPs_9351 0 0 1 0 0 chromatin 1 0.500231648752451 1 0.999536702495098 hm5C_site_11765 DeepMRMD:1;iRNA_m5C:0.999536702495098 11766 chr11 65352939 65352939 1 + G A rs373052924 65352931 + 65352911 65352951 41 AGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTC AGCCCGGGTCGGTGCCCCCGCCCCGCGCACACGGCTCCTTC < 41bp 1 0.388506298303058 1 0.289534866809845 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352931 chr11:65352939 synonymous SNV . 0 29 hm5C_associated_SNPs_9352 0 0 1 0 0 chromatin 1 0.500231643951265 1 0.999536712097471 hm5C_site_11766 DeepMRMD:1;iRNA_m5C:0.999536712097471 11767 chr11 65352939 65352939 1 + G A rs373052924 65352932 + 65352912 65352952 41 GCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTCT GCCCGGGTCGGTGCCCCCGCCCCGCGCACACGGCTCCTTCT < 41bp 1 0.238250612043918 1 0.69917356967926 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352932 chr11:65352939 synonymous SNV . 0 28 hm5C_associated_SNPs_9353 0 0 1 0 0 chromatin 1 0.500231643921092 0.60165286064148 0.999536712157817 hm5C_site_11767 DeepMRMD:0.60165286064148;iRNA_m5C:0.999536712157817 11768 chr11 65352939 65352939 1 + G A rs373052924 65352933 + 65352913 65352953 41 CCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTCTC CCCGGGTCGGTGCCCCCGCCCCGCGCACACGGCTCCTTCTC < 41bp 1 0.441888212251069 1 0.473346561193466 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352933 chr11:65352939 synonymous SNV . 0 27 hm5C_associated_SNPs_9354 0 0 1 0 0 chromatin 1 0.500231643921389 1 0.999536712157223 hm5C_site_11768 DeepMRMD:1;iRNA_m5C:0.999536712157223 11769 chr11 65352939 65352939 1 + G A rs373052924 65352934 + 65352914 65352954 41 CCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTCTCC CCGGGTCGGTGCCCCCGCCCCGCGCACACGGCTCCTTCTCC < 41bp 1 0.495880243421541 1 0.739211678504944 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352934 chr11:65352939 synonymous SNV . 0 26 hm5C_associated_SNPs_9355 0 0 1 0 0 chromatin 1 0.500231643921092 0.521576642990112 0.999536712157815 hm5C_site_11769 DeepMRMD:0.521576642990112;iRNA_m5C:0.999536712157815 11770 chr11 65352942 65352942 1 + C T rs536332698 65352925 + 65352905 65352945 41 ACGGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGC ACGGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCATGGC < 41bp 1 0.194800099682094 1 0.151617050170898 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352925 chr11:65352942 synonymous SNV . 0 38 hm5C_associated_SNPs_9357 0 0 1 0 0 chromatin 1 0.50023155318007 1 0.99953689363986 hm5C_site_11770 DeepMRMD:1;iRNA_m5C:0.99953689363986 11771 chr11 65352942 65352942 1 + C T rs536332698 65352926 + 65352906 65352946 41 CGGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCT CGGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCATGGCT < 41bp 1 0.273913647906845 1 0.337616562843323 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352926 chr11:65352942 synonymous SNV . 0 37 hm5C_associated_SNPs_9358 0 0 1 0 0 chromatin 1 0.50023166582591 1 0.999536668348181 hm5C_site_11771 DeepMRMD:1;iRNA_m5C:0.999536668348181 11772 chr11 65352942 65352942 1 + C T rs536332698 65352927 + 65352907 65352947 41 GGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTC GGGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCATGGCTC < 41bp 1 0.284948747008618 1 0.189030051231384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352927 chr11:65352942 synonymous SNV . 0 36 hm5C_associated_SNPs_9359 0 0 1 0 0 chromatin 1 0.500231104750875 1 0.999537790498251 hm5C_site_11772 DeepMRMD:1;iRNA_m5C:0.999537790498251 11773 chr11 65352942 65352942 1 + C T rs536332698 65352928 + 65352908 65352948 41 GGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCC GGGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCATGGCTCC < 41bp 1 0.170676405690929 1 0.487572610378265 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352928 chr11:65352942 synonymous SNV . 0 35 hm5C_associated_SNPs_9360 0 0 1 0 0 chromatin 1 0.500233475561796 1 0.999533048876408 hm5C_site_11773 DeepMRMD:1;iRNA_m5C:0.999533048876408 11774 chr11 65352942 65352942 1 + C T rs536332698 65352929 + 65352909 65352949 41 GGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCT GGAGCCCGGGTCGGTGCCCCCGCCCCGCGCGCATGGCTCCT < 41bp 1 0.431561085623348 1 0.358152329921722 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352929 chr11:65352942 synonymous SNV . 0 34 hm5C_associated_SNPs_9361 0 0 1 0 0 chromatin 1 0.500231643761909 1 0.999536712476181 hm5C_site_11774 DeepMRMD:1;iRNA_m5C:0.999536712476181 11775 chr11 65352942 65352942 1 + C T rs536332698 65352931 + 65352911 65352951 41 AGCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTC AGCCCGGGTCGGTGCCCCCGCCCCGCGCGCATGGCTCCTTC < 41bp 1 0.452973047661894 1 0.246583461761475 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352931 chr11:65352942 synonymous SNV . 0 32 hm5C_associated_SNPs_9362 0 0 1 0 0 chromatin 1 0.500231643925258 1 0.999536712149484 hm5C_site_11775 DeepMRMD:1;iRNA_m5C:0.999536712149484 11776 chr11 65352942 65352942 1 + C T rs536332698 65352932 + 65352912 65352952 41 GCCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTCT GCCCGGGTCGGTGCCCCCGCCCCGCGCGCATGGCTCCTTCT < 41bp 1 0.216764205136322 1 0.429115056991577 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352932 chr11:65352942 synonymous SNV . 0 31 hm5C_associated_SNPs_9363 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_11776 DeepMRMD:1;iRNA_m5C:0.999536712157815 11777 chr11 65352942 65352942 1 + C T rs536332698 65352933 + 65352913 65352953 41 CCCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTCTC CCCGGGTCGGTGCCCCCGCCCCGCGCGCATGGCTCCTTCTC < 41bp 1 0.410647726408323 1 0.196507841348648 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352933 chr11:65352942 synonymous SNV . 0 30 hm5C_associated_SNPs_9364 0 0 1 0 0 chromatin 1 0.500231644251804 1 0.999536711496391 hm5C_site_11777 DeepMRMD:1;iRNA_m5C:0.999536711496391 11778 chr11 65352942 65352942 1 + C T rs536332698 65352934 + 65352914 65352954 41 CCGGGTCGGTGCCCCCGCCCCGCGCGCACGGCTCCTTCTCC CCGGGTCGGTGCCCCCGCCCCGCGCGCATGGCTCCTTCTCC < 41bp 1 0.57132588374913 1 0.720723688602448 experiment 0.857348232501739 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352934 chr11:65352942 synonymous SNV . 0 29 hm5C_associated_SNPs_9365 0 0 1 0 0 chromatin 1 0.500231643921092 0.558552622795104 0.999536712157815 hm5C_site_11778 DeepMRMD:0.558552622795104;iRNA_m5C:0.999536712157815 11779 chr11 65386206 65386206 1 + C G rs1193851 65386204 + 65386184 65386224 41 TCCTGCTACTCCCCTGAGAGCTCCCGGGGTGCAGCAGGGGG TCCTGCTACTCCCCTGAGAGCTGCCGGGGTGCAGCAGGGGG < 41bp 1 0.287595161168715 1 0.263397336006165 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65386204 chr11:65386206 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_9366 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11779 DeepMRMD:1;iRNA_m5C:0.999536712157815 11780 chr11 65392695 65392695 1 + C T rs1205259 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGTGGCCTTCTGGTGGCACTGTCCTACCACCTGAGCCGG < 41bp 1 0.122264893552876 1 0.336008191108704 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392695 synonymous SNV . 0 11 hm5C_associated_SNPs_9367 0 0 1 0 2 Ribosome 1 0.500231655363052 1 0.999536689273896 hm5C_site_11780 DeepMRMD:1;iRNA_m5C:0.999536689273896 11781 chr11 65392704 65392704 1 + A G rs187327032 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGTGGCCTCCTGGTGGCGCTGTCCTACCACCTGAGCCGG < 41bp 1 0.101832033498515 1 0.470705837011337 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392704 synonymous SNV . 0 20 hm5C_associated_SNPs_9368 0 0 1 0 2 Ribosome 1 0.500231643929549 1 0.999536712140902 hm5C_site_11781 DeepMRMD:1;iRNA_m5C:0.999536712140902 11782 chr11 65392725 65392725 1 + G A rs61742865 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGA < 41bp 1 0.118622157593583 1 0.441289871931076 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392725 synonymous SNV . 0 41 hm5C_associated_SNPs_9369 0 0 1 0 2 Ribosome 1 0.500231634173578 1 0.999536731652843 hm5C_site_11782 DeepMRMD:1;iRNA_m5C:0.999536731652843 11783 chr11 65402862 65402862 1 + C T rs200153485 65402842 + 65402822 65402862 41 CCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTCC CCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTCT < 41bp 1 0.0755983260150582 1 0.321373760700226 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402842 chr11:65402862 synonymous SNV . 0 41 hm5C_associated_SNPs_9370 0 0 1 0 1 Ribosome 1 0.500231643893216 1 0.999536712213569 hm5C_site_11783 DeepMRMD:1;iRNA_m5C:0.999536712213569 11784 chr11 65562966 65562966 1 + G A rs529855862 65562971 + 65562951 65562991 41 CCCCCCTGGGCACACGTGCTCACTCAGGCCCAGCAATGACC CCCCCCTGGGCACACATGCTCACTCAGGCCCAGCAATGACC < 41bp 1 0.186862589690204 1 0.0140851736068726 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OVOL1 ENSG00000172818 UTR3 Human protein_coding chr11:65562971 chr11:65562966 . . 0 16 hm5C_associated_SNPs_9371 0 0 0 0 0 exosome 1 0.500234393225294 1 0.999531213549413 hm5C_site_11784 DeepMRMD:1;iRNA_m5C:0.999531213549413 11785 chr11 65562978 65562978 1 + G A rs144263047 65562971 + 65562951 65562991 41 CCCCCCTGGGCACACGTGCTCACTCAGGCCCAGCAATGACC CCCCCCTGGGCACACGTGCTCACTCAGACCCAGCAATGACC < 41bp 1 0.188946844952426 1 0.0217850804328918 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OVOL1 ENSG00000172818 UTR3 Human protein_coding chr11:65562971 chr11:65562978 . . 0 28 hm5C_associated_SNPs_9372 0 0 0 0 0 exosome 1 0.500231658865776 1 0.999536682268447 hm5C_site_11785 DeepMRMD:1;iRNA_m5C:0.999536682268447 11786 chr11 65658714 65658714 1 + C G rs148802656 65658701 + 65658681 65658721 41 GCGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCCCCAGCGG GCGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCGCCAGCGG < 41bp 1 0.248493030292322 1 0.335472524166107 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658701 chr11:65658714 nonsynonymous SNV 0.640 0 34 hm5C_associated_SNPs_9373 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11786 DeepMRMD:1;iRNA_m5C:0.999536712157815 11787 chr11 65658714 65658714 1 + C G rs148802656 65658702 + 65658682 65658722 41 CGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCCCCAGCGGC CGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCGCCAGCGGC < 41bp 1 0.281000370609653 1 0.142485648393631 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658702 chr11:65658714 nonsynonymous SNV 0.640 0 33 hm5C_associated_SNPs_9374 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11787 DeepMRMD:1;iRNA_m5C:0.999536712157815 11788 chr11 65658714 65658714 1 + C G rs148802656 65658715 + 65658695 65658735 41 ATGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGGGGGATCAG ATGGGGCCCCCGCGGCGGCGCCAGCGGCGCCGGGGGATCAG < 41bp 1 0.372109892944073 1 0.460444688796997 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658715 chr11:65658714 nonsynonymous SNV 0.640 0 20 hm5C_associated_SNPs_9375 0 0 1 0 0 Ribosome 1 0.500231643921298 1 0.999536712157404 hm5C_site_11788 DeepMRMD:1;iRNA_m5C:0.999536712157404 11789 chr11 65658717 65658717 1 + A C rs539326529 65658701 + 65658681 65658721 41 GCGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCCCCAGCGG GCGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCCCCCGCGG < 41bp 1 0.28283647312045 1 0.266241788864136 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658701 chr11:65658717 nonsynonymous SNV 0.042 0 37 hm5C_associated_SNPs_9377 0 0 1 0 0 Ribosome 1 0.500231644004758 1 0.999536711990485 hm5C_site_11789 DeepMRMD:1;iRNA_m5C:0.999536711990485 11790 chr11 65658717 65658717 1 + A C rs539326529 65658702 + 65658682 65658722 41 CGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCCCCAGCGGC CGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCCCCCGCGGC < 41bp 1 0.332715917978412 1 0.186947256326675 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658702 chr11:65658717 nonsynonymous SNV 0.042 0 36 hm5C_associated_SNPs_9378 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11790 DeepMRMD:1;iRNA_m5C:0.999536712157815 11791 chr11 65658717 65658717 1 + A C rs539326529 65658713 + 65658693 65658733 41 GAATGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGGGGGATC GAATGGGGCCCCCGCGGCGGCCCCCGCGGCGCCGGGGGATC < 41bp 1 0.212136967168823 1 0.18953663110733 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658713 chr11:65658717 nonsynonymous SNV 0.042 0 25 hm5C_associated_SNPs_9379 0 0 1 0 0 Ribosome 1 0.500231643853826 1 0.999536712292349 hm5C_site_11791 DeepMRMD:1;iRNA_m5C:0.999536712292349 11792 chr11 65658717 65658717 1 + A C rs539326529 65658714 + 65658694 65658734 41 AATGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGGGGGATCA AATGGGGCCCCCGCGGCGGCCCCCGCGGCGCCGGGGGATCA < 41bp 1 0.381544699660834 1 0.415077209472656 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658714 chr11:65658717 nonsynonymous SNV 0.042 0 24 hm5C_associated_SNPs_9380 0 0 1 0 0 Ribosome 1 0.500231643935494 1 0.999536712129013 hm5C_site_11792 DeepMRMD:1;iRNA_m5C:0.999536712129013 11793 chr11 65658717 65658717 1 + A C rs539326529 65658715 + 65658695 65658735 41 ATGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGGGGGATCAG ATGGGGCCCCCGCGGCGGCCCCCGCGGCGCCGGGGGATCAG < 41bp 1 0.41690190469043 1 0.254872620105743 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658715 chr11:65658717 nonsynonymous SNV 0.042 0 23 hm5C_associated_SNPs_9381 0 0 1 0 0 Ribosome 1 0.500231643920949 1 0.999536712158103 hm5C_site_11793 DeepMRMD:1;iRNA_m5C:0.999536712158103 11794 chr11 65658717 65658717 1 + A C rs539326529 65658716 + 65658696 65658736 41 TGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGGGGGATCAGG TGGGGCCCCCGCGGCGGCCCCCGCGGCGCCGGGGGATCAGG < 41bp 1 0.518012988766011 1 0.516310632228851 experiment 0.963974022467978 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658716 chr11:65658717 nonsynonymous SNV 0.042 0 22 hm5C_associated_SNPs_9382 0 0 1 0 0 Ribosome 1 0.50023164395496 0.967378735542298 0.99953671209008 hm5C_site_11794 DeepMRMD:0.967378735542298;iRNA_m5C:0.99953671209008 11795 chr11 65658721 65658721 1 + G A rs199500126 65658701 + 65658681 65658721 41 GCGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCCCCAGCGG GCGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCCCCAGCGA < 41bp 1 0.257945853758902 1 0.321434080600739 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658701 chr11:65658721 nonsynonymous SNV 0.101 0 41 hm5C_associated_SNPs_9383 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11795 DeepMRMD:1;iRNA_m5C:0.999536712157815 11796 chr11 65658721 65658721 1 + G A rs199500126 65658702 + 65658682 65658722 41 CGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCCCCAGCGGC CGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCCCCAGCGAC < 41bp 1 0.306039226986629 1 0.152186214923859 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658702 chr11:65658721 nonsynonymous SNV 0.101 0 40 hm5C_associated_SNPs_9384 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11796 DeepMRMD:1;iRNA_m5C:0.999536712157815 11797 chr11 65658721 65658721 1 + G A rs199500126 65658713 + 65658693 65658733 41 GAATGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGGGGGATC GAATGGGGCCCCCGCGGCGGCCCCAGCGACGCCGGGGGATC < 41bp 1 0.557479883752424 1 0.202114075422287 experiment 0.885040232495152 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658713 chr11:65658721 nonsynonymous SNV 0.101 0 29 hm5C_associated_SNPs_9385 0 0 1 0 0 Ribosome 1 0.500231636783694 1 0.999536726432612 hm5C_site_11797 DeepMRMD:1;iRNA_m5C:0.999536726432612 11798 chr11 65658721 65658721 1 + G A rs199500126 65658714 + 65658694 65658734 41 AATGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGGGGGATCA AATGGGGCCCCCGCGGCGGCCCCAGCGACGCCGGGGGATCA < 41bp 1 0.309544121740178 1 0.476855576038361 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658714 chr11:65658721 nonsynonymous SNV 0.101 0 28 hm5C_associated_SNPs_9386 0 0 1 0 0 Ribosome 1 0.50023164392109 1 0.999536712157821 hm5C_site_11798 DeepMRMD:1;iRNA_m5C:0.999536712157821 11799 chr11 65658721 65658721 1 + G A rs199500126 65658715 + 65658695 65658735 41 ATGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGGGGGATCAG ATGGGGCCCCCGCGGCGGCCCCAGCGACGCCGGGGGATCAG < 41bp 1 0.379485450097482 1 0.275589346885681 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658715 chr11:65658721 nonsynonymous SNV 0.101 0 27 hm5C_associated_SNPs_9387 0 0 1 0 0 Ribosome 1 0.500160095653822 1 0.999679808692357 hm5C_site_11799 DeepMRMD:1;iRNA_m5C:0.999679808692357 11800 chr11 65658721 65658721 1 + G A rs199500126 65658716 + 65658696 65658736 41 TGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGGGGGATCAGG TGGGGCCCCCGCGGCGGCCCCAGCGACGCCGGGGGATCAGG < 41bp 1 0.693789737324848 1 0.74153208732605 experiment 0.612420525350303 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658716 chr11:65658721 nonsynonymous SNV 0.101 0 26 hm5C_associated_SNPs_9388 0 0 1 0 0 Ribosome 1 0.500231584635187 0.5169358253479 0.999536830729625 hm5C_site_11800 DeepMRMD:0.5169358253479;iRNA_m5C:0.999536830729625 11801 chr11 65658722 65658722 1 + C A rs75556285 65658702 + 65658682 65658722 41 CGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCCCCAGCGGC CGCTGGGCGAAGAATGGGGCCCCCGCGGCGGCCCCAGCGGA < 41bp 1 0.286477467175827 1 0.173403441905975 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658702 chr11:65658722 synonymous SNV . 0 41 hm5C_associated_SNPs_9389 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11801 DeepMRMD:1;iRNA_m5C:0.999536712157815 11802 chr11 65658722 65658722 1 + C A rs75556285 65658713 + 65658693 65658733 41 GAATGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGGGGGATC GAATGGGGCCCCCGCGGCGGCCCCAGCGGAGCCGGGGGATC < 41bp 1 0.5731813490546 1 0.463027775287628 experiment 0.853637301890801 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658713 chr11:65658722 synonymous SNV . 0 30 hm5C_associated_SNPs_9390 0 0 1 0 0 Ribosome 1 0.500231643430828 1 0.999536713138345 hm5C_site_11802 DeepMRMD:1;iRNA_m5C:0.999536713138345 11803 chr11 65658722 65658722 1 + C A rs75556285 65658714 + 65658694 65658734 41 AATGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGGGGGATCA AATGGGGCCCCCGCGGCGGCCCCAGCGGAGCCGGGGGATCA < 41bp 1 0.329962558615581 1 0.390478193759918 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658714 chr11:65658722 synonymous SNV . 0 29 hm5C_associated_SNPs_9391 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11803 DeepMRMD:1;iRNA_m5C:0.999536712157815 11804 chr11 65658722 65658722 1 + C A rs75556285 65658715 + 65658695 65658735 41 ATGGGGCCCCCGCGGCGGCCCCAGCGGCGCCGGGGGATCAG ATGGGGCCCCCGCGGCGGCCCCAGCGGAGCCGGGGGATCAG < 41bp 1 0.371063243443805 1 0.384809136390686 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control CCDC85B ENSG00000175602 CDS Human protein_coding chr11:65658715 chr11:65658722 synonymous SNV . 0 28 hm5C_associated_SNPs_9392 0 0 1 0 0 Ribosome 1 0.500231635102286 1 0.999536729795429 hm5C_site_11804 DeepMRMD:1;iRNA_m5C:0.999536729795429 11805 chr11 65733393 65733393 1 + C T rs688862 65733404 + 65733384 65733424 41 GGGCCTCACCGTGGAGCATGCCATTGATTCCTTCCGAGAAG GGGCCTCACTGTGGAGCATGCCATTGATTCCTTCCGAGAAG < 41bp 1 0.0795384781211097 1 0.0569166243076324 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SART1 ENSG00000175467 CDS Human protein_coding chr11:65733404 chr11:65733393 synonymous SNV . 0 10 hm5C_associated_SNPs_9394 0 0 1 0 2 Cytosol 1 0.500231643921097 1 0.999536712157807 hm5C_site_11805 DeepMRMD:1;iRNA_m5C:0.999536712157807 11806 chr11 65769593 65769593 1 + C T rs117774800 65769608 - 65769588 65769628 41 AGTACGGTTTTCGGAGGGATCAGACTCAGACTCACGTCGCA AGTACGGTTTTCGGAGGGATCAGACTCAGACTCACATCGCA < 41bp 1 0.552448306964422 1 0.813349962234497 experiment 0.895103386071156 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BANF1;EIF1AD ENSG00000175334;ENSG00000175376 UTR5 Human other chr11:65769608 chr11:65769593 . . 0 36 hm5C_associated_SNPs_9395 1 0 1 0 0 unknown 1 0.500231643921095 0.373300075531006 0.99953671215781 hm5C_site_11806 DeepMRMD:0.373300075531006;iRNA_m5C:0.99953671215781 Nestor-Guillermo progeria syndrome Nestor-Guillermo progeria syndrome 11807 chr11 65769596 65769596 1 + G C rs546268354 65769608 - 65769588 65769628 41 AGTACGGTTTTCGGAGGGATCAGACTCAGACTCACGTCGCA AGTACGGTTTTCGGAGGGATCAGACTCAGACTGACGTCGCA < 41bp 1 0.550638710544964 1 0.832885026931763 experiment 0.898722578910072 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BANF1;EIF1AD ENSG00000175334;ENSG00000175376 UTR5 Human other chr11:65769608 chr11:65769596 . . 0 33 hm5C_associated_SNPs_9396 0 0 1 0 0 unknown 1 0.500231643923705 0.334229946136474 0.999536712152589 hm5C_site_11807 DeepMRMD:0.334229946136474;iRNA_m5C:0.999536712152589 11808 chr11 66062737 66062737 1 + A G rs112148750 66062717 + 66062697 66062737 41 GGGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTGGCCACA GGGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTGGCCACG < 41bp 1 0.309383127994251 1 0.17470446228981 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66062717 chr11:66062737 synonymous SNV . 0 41 hm5C_associated_SNPs_9398 0 0 0 0 0 exosome 1 0.500231106661962 1 0.999537786676077 hm5C_site_11808 DeepMRMD:1;iRNA_m5C:0.999537786676077 11809 chr11 66062737 66062737 1 + A G rs112148750 66062718 + 66062698 66062738 41 GGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTGGCCACAG GGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTGGCCACGG < 41bp 1 0.615832535832234 1 0.739431440830231 experiment 0.768334928335533 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66062718 chr11:66062737 synonymous SNV . 0 40 hm5C_associated_SNPs_9399 0 0 0 0 0 exosome 1 0.500231643930923 0.521137118339538 0.999536712138154 hm5C_site_11809 DeepMRMD:0.521137118339538;iRNA_m5C:0.999536712138154 11810 chr11 66062990 66062990 1 + G A rs551319186 66063004 + 66062984 66063024 41 AGCGGGGGGCCGCTGGGGCGCCGTGGAGAGGACACGGAACC AGCGGGAGGCCGCTGGGGCGCCGTGGAGAGGACACGGAACC < 41bp 1 0.391146714294112 1 0.541715860366821 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66063004 chr11:66062990 nonsynonymous SNV 0.791 2 7 hm5C_associated_SNPs_9400 0 0 0 0 0 exosome 1 0.500231643920777 0.916568279266358 0.999536712158446 hm5C_site_11810 DeepMRMD:0.916568279266358;iRNA_m5C:0.999536712158446 11811 chr11 66234468 66234468 1 + C A rs544968300 66234474 + 66234454 66234494 41 AGGCGGGGAGGGAGCGGCGCCCAGCGGGGCCCGGAGCGTGG AGGCGGGGAGGGAGAGGCGCCCAGCGGGGCCCGGAGCGTGG < 41bp 1 0.539577765338408 1 0.431431829929352 experiment 0.920844469323184 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PELI3 ENSG00000174516 UTR5 Human protein_coding chr11:66234474 chr11:66234468 . . 0 15 hm5C_associated_SNPs_9401 0 0 1 0 1 Ribosome 1 0.50023164388511 1 0.999536712229781 hm5C_site_11811 DeepMRMD:1;iRNA_m5C:0.999536712229781 11812 chr11 66247844 66247844 1 + G A rs2279864 66247841 + 66247821 66247861 41 GCCCATCCGGACCCCGAGGCCAGGCAGTTGGCCAAGGGGGG GCCCATCCGGACCCCGAGGCCAGACAGTTGGCCAAGGGGGG < 41bp 1 0.379472046035204 1 0.493401706218719 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DPP3 ENSG00000254986 UTR5 Human protein_coding chr11:66247841 chr11:66247844 . . 0 24 hm5C_associated_SNPs_9402 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11812 DeepMRMD:1;iRNA_m5C:0.999536712157815 11813 chr11 66247857 66247857 1 + G C rs201142853 66247841 + 66247821 66247861 41 GCCCATCCGGACCCCGAGGCCAGGCAGTTGGCCAAGGGGGG GCCCATCCGGACCCCGAGGCCAGGCAGTTGGCCAAGCGGGG < 41bp 1 0.56064184337733 1 0.690430879592896 experiment 0.87871631324534 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DPP3 ENSG00000254986 UTR5 Human protein_coding chr11:66247841 chr11:66247857 . . 0 37 hm5C_associated_SNPs_9403 0 0 0 0 1 Nucleus 1 0.500231643921092 0.619138240814208 0.999536712157815 hm5C_site_11813 DeepMRMD:0.619138240814208;iRNA_m5C:0.999536712157815 11814 chr11 66261044 66261044 1 + C A rs76777675 66261037 + 66261017 66261057 41 GTACATCCTCTGGAAGGGGCCCTCCTTCGATGTGCAGGTGG GTACATCCTCTGGAAGGGGCCCTCCTTAGATGTGCAGGTGG < 41bp 1 0.0544374634452073 1 0.172056615352631 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66261037 chr11:66261044 nonsynonymous SNV 0.988 4 28 hm5C_associated_SNPs_9404 0 0 1 0 2 Nucleus 1 0.500231643920542 1 0.999536712158915 hm5C_site_11814 DeepMRMD:1;iRNA_m5C:0.999536712158915 11815 chr11 66282095 66282095 1 + G A rs2298806 66282089 + 66282069 66282109 41 CTCAGACCCTACTTCAAGTTCAGCCTGCCCCAATTGCCTCC CTCAGACCCTACTTCAAGTTCAGCCTACCCCAATTGCCTCC < 41bp 1 0.363286696133671 1 0.198149591684341 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66282089 chr11:66282095 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_9405 2 0 0 0 1 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_11815 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 11816 chr11 66411240 66411240 1 + C G rs376541870 66411252 + 66411232 66411272 41 TATAATTACGCAGAGCAGACCCTGTCCCAGCTGCCACAAGT TATAATTAGGCAGAGCAGACCCTGTCCCAGCTGCCACAAGT < 41bp 1 0.0672033908865413 1 0.0376466810703278 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66411252 chr11:66411240 stopgain 0.944 0 9 hm5C_associated_SNPs_9407 0 0 1 0 0 unknown 1 0.500231643867874 1 0.999536712264252 hm5C_site_11816 DeepMRMD:1;iRNA_m5C:0.999536712264252 11817 chr11 66610645 66610645 1 + G C rs7570 66610663 + 66610643 66610683 41 GTGCTGTGGCTGCAGGAGGTCTCCAACCTGTCAGAGTGGCT GTCCTGTGGCTGCAGGAGGTCTCCAACCTGTCAGAGTGGCT < 41bp 1 0.64403005776287 1 0.884185910224915 experiment 0.71193988447426 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66610663 chr11:66610645 synonymous SNV . 0 3 hm5C_associated_SNPs_9408 0 1 1 0 1 Endoplasmic reticulum 1 0.500231102858075 0.23162817955017 0.999537794283849 hm5C_site_11817 DeepMRMD:0.23162817955017;iRNA_m5C:0.999537794283849 11818 chr11 66627658 66627658 1 + G A rs79880981 66627671 + 66627651 66627691 41 AGAGAGTGTGGTGTGATGGACGGGCAGCTTCCTGTGTGCTC AGAGAGTATGGTGTGATGGACGGGCAGCTTCCTGTGTGCTC < 41bp 1 0.530784314823663 1 0.470032513141632 experiment 0.938431370352675 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627671 chr11:66627658 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_9409 0 0 1 0 0 Ribosome 1 0.500235410572302 1 0.999529178855396 hm5C_site_11818 DeepMRMD:1;iRNA_m5C:0.999529178855396 11819 chr11 66837996 66837996 1 + G A rs34270544 66837994 + 66837974 66838014 41 AAATCACTGGTGAACAAGCTCCGAAGAAACGGATTGGAGCC AAATCACTGGTGAACAAGCTCCAAAGAAACGGATTGGAGCC < 41bp 1 0.448326513923323 1 0.340156972408295 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66837994 chr11:66837996 nonsynonymous SNV 0.402 0 23 hm5C_associated_SNPs_9410 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11819 DeepMRMD:1;iRNA_m5C:0.999536712157815 11820 chr11 66837996 66837996 1 + G A rs34270544 66837995 + 66837975 66838015 41 AATCACTGGTGAACAAGCTCCGAAGAAACGGATTGGAGCCT AATCACTGGTGAACAAGCTCCAAAGAAACGGATTGGAGCCT < 41bp 1 0.338994239812404 1 0.564586877822876 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66837995 chr11:66837996 nonsynonymous SNV 0.402 0 22 hm5C_associated_SNPs_9411 0 0 0 0 0 Cytosol 1 0.500232127042341 0.870826244354248 0.999535745915318 hm5C_site_11820 DeepMRMD:0.870826244354248;iRNA_m5C:0.999535745915318 11821 chr11 67024534 67024534 1 + C T rs7952436 67024537 + 67024517 67024557 41 GCCTTTTTCTTTGGTTGCTCCTGTGGAAAATACTGAAAAGA GCCTTTTTCTTTGGTTGTTCCTGTGGAAAATACTGAAAAGA < 41bp 1 0.167449464708263 1 0.386892288923264 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM2A ENSG00000173120 UTR3 Human protein_coding chr11:67024537 chr11:67024534 . . 0 18 hm5C_associated_SNPs_9412 0 1 1 0 0 Cytosol 1 0.500231919801457 1 0.999536160397087 hm5C_site_11821 DeepMRMD:1;iRNA_m5C:0.999536160397087 11822 chr11 67075207 67075207 1 + G A rs61731782 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCAGGTC < 41bp 1 0.65803036849201 1 0.788802266120911 experiment 0.68393926301598 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075207 nonsynonymous SNV 0.109 0 37 hm5C_associated_SNPs_9414 0 0 0 0 1 nucleus 1 0.500231651242899 0.422395467758178 0.999536697514201 hm5C_site_11822 DeepMRMD:0.422395467758178;iRNA_m5C:0.999536697514201 11823 chr11 67079286 67079286 1 + C T rs61731781 67079295 + 67079275 67079315 41 CCCTGCATTTCCTCTACGCCCAGGTTCCGGAAGGTGGTGAG CCCTGCATTTCTTCTACGCCCAGGTTCCGGAAGGTGGTGAG < 41bp 1 0.584003694796811 1 0.352805256843567 experiment 0.831992610406378 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67079295 chr11:67079286 synonymous SNV . 0 12 hm5C_associated_SNPs_9415 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11823 DeepMRMD:1;iRNA_m5C:0.999536712157815 11824 chr11 67079396 67079396 1 + G C rs375663879 67079400 + 67079380 67079420 41 CCCCTGACACTGAAGAGGATCCACAACTCCTTGGAGAAACA CCCCTGACACTGAAGACGATCCACAACTCCTTGGAGAAACA < 41bp 1 0.20963375022164 1 0.125205248594284 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SSH3 ENSG00000172830 UTR3 Human protein_coding chr11:67079400 chr11:67079396 . . 0 17 hm5C_associated_SNPs_9416 0 0 1 0 0 nucleus 1 0.500231643926746 1 0.999536712146507 hm5C_site_11824 DeepMRMD:1;iRNA_m5C:0.999536712146507 11825 chr11 67165714 67165714 1 + C T rs138232846 67165726 + 67165706 67165746 41 CCGGCTGCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCAC CCGGCTGCTAGCCCTGAGGCCAAGCACGGCTGGAGACCCAC < 41bp 1 0.529946756932633 1 0.192518651485443 experiment 0.940106486134734 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1CA;RAD9A ENSG00000172531;ENSG00000172613 UTR3 Human other chr11:67165726 chr11:67165714 . . 0 9 hm5C_associated_SNPs_9417 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_11825 DeepMRMD:1;iRNA_m5C:0.999536712157815 11826 chr11 67165725 67165725 1 + C G rs565550066 67165726 + 67165706 67165746 41 CCGGCTGCCAGCCCTGAGGCCAAGCACGGCTGGAGACCCAC CCGGCTGCCAGCCCTGAGGGCAAGCACGGCTGGAGACCCAC < 41bp 1 0.519750163931488 1 0.261118143796921 experiment 0.960499672137025 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1CA;RAD9A ENSG00000172531;ENSG00000172613 UTR3 Human other chr11:67165726 chr11:67165725 . . 0 20 hm5C_associated_SNPs_9418 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_11826 DeepMRMD:1;iRNA_m5C:0.999536712157815 11827 chr11 67202552 67202552 1 + C T rs373972783 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TCTACCTCCACTCCTGCCACCGCTGCCGCCCTCGACCACCG < 41bp 1 0.575132985388705 1 0.445396244525909 experiment 0.849734029222589 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202552 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_9419 0 0 1 0 1 Ribosome 1 0.500231643920413 1 0.999536712159173 hm5C_site_11827 DeepMRMD:1;iRNA_m5C:0.999536712159173 11828 chr11 67202552 67202552 1 + C T rs373972783 67202551 + 67202531 67202571 41 TACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCC TACCTCCACTCCTGCCACCGCTGCCGCCCTCGACCACCGCC < 41bp 1 0.560757328794588 1 0.244651317596436 experiment 0.878485342410824 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202551 chr11:67202552 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_9420 0 0 1 0 1 Ribosome 1 0.500231514828275 1 0.99953697034345 hm5C_site_11828 DeepMRMD:1;iRNA_m5C:0.99953697034345 11829 chr11 67202573 67202573 1 + C G rs200313021 67202555 + 67202535 67202575 41 TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCCCCTC TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCCCGTC < 41bp 1 0.588004296643535 1 0.246205568313599 experiment 0.82399140671293 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202555 chr11:67202573 nonsynonymous SNV 0.505 1 39 hm5C_associated_SNPs_9422 0 0 1 1 0 Ribosome 1 0.500231665730641 1 0.999536668538718 hm5C_site_11829 DeepMRMD:1;iRNA_m5C:0.999536668538718 11830 chr11 67351297 67351297 1 + G A rs8191439 67351282 + 67351262 67351302 41 CTCGGAGGCCGCGAGGCCTTCGCTGGAGTTTCGCCGCCGCA CTCGGAGGCCGCGAGGCCTTCGCTGGAGTTTCGCCACCGCA < 41bp 1 0.661713269935065 1 0.333990514278412 experiment 0.67657346012987 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTP1 ENSG00000084207 UTR5 Human protein_coding chr11:67351282 chr11:67351297 . . 0 36 hm5C_associated_SNPs_9423 0 0 1 0 1 Cytosol 1 0.50023164392109 1 0.999536712157819 hm5C_site_11830 DeepMRMD:1;iRNA_m5C:0.999536712157819 11831 chr11 67374402 67374402 1 + T C rs373383800 67374409 + 67374389 67374429 41 GCGCCACCTAGCGTCTCTATCGCGCCAGTTCCTCAGCCTCA GCGCCACCTAGCGCCTCTATCGCGCCAGTTCCTCAGCCTCA < 41bp 1 0.656971866943407 1 0.568070292472839 experiment 0.686056266113185 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NDUFV1 ENSG00000167792 UTR5 Human protein_coding chr11:67374409 chr11:67374402 . . 0 14 hm5C_associated_SNPs_9425 0 0 1 0 0 Ribosome 1 0.500231915321258 0.863859415054322 0.999536169357483 hm5C_site_11831 DeepMRMD:0.863859415054322;iRNA_m5C:0.999536169357483 11832 chr11 67374402 67374402 1 + T C rs373383800 67374422 + 67374402 67374442 41 TCTCTATCGCGCCAGTTCCTCAGCCTCAGTGCTATGAAGGT CCTCTATCGCGCCAGTTCCTCAGCCTCAGTGCTATGAAGGT < 41bp 1 0.385690464395057 1 0.422183990478516 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NDUFV1 ENSG00000167792 UTR5 Human protein_coding chr11:67374422 chr11:67374402 . . 0 1 hm5C_associated_SNPs_9426 0 0 1 0 0 Ribosome 1 0.500231642435335 1 0.999536715129329 hm5C_site_11832 DeepMRMD:1;iRNA_m5C:0.999536715129329 11833 chr11 67374410 67374410 1 + G A rs73490568 67374409 + 67374389 67374429 41 GCGCCACCTAGCGTCTCTATCGCGCCAGTTCCTCAGCCTCA GCGCCACCTAGCGTCTCTATCACGCCAGTTCCTCAGCCTCA < 41bp 1 0.586967516319937 1 0.458870023488998 experiment 0.826064967360127 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NDUFV1 ENSG00000167792 UTR5 Human protein_coding chr11:67374409 chr11:67374410 . . 0 22 hm5C_associated_SNPs_9427 2 0 1 0 0 Ribosome 1 0.500227976719337 1 0.999544046561327 hm5C_site_11833 DeepMRMD:1;iRNA_m5C:0.999544046561327 Leigh syndrome Leigh syndrome 11834 chr11 67374410 67374410 1 + G A rs73490568 67374422 + 67374402 67374442 41 TCTCTATCGCGCCAGTTCCTCAGCCTCAGTGCTATGAAGGT TCTCTATCACGCCAGTTCCTCAGCCTCAGTGCTATGAAGGT < 41bp 1 0.356134414169206 1 0.408865123987198 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NDUFV1 ENSG00000167792 UTR5 Human protein_coding chr11:67374422 chr11:67374410 . . 0 9 hm5C_associated_SNPs_9428 2 0 1 0 0 Ribosome 1 0.500231642867665 1 0.99953671426467 hm5C_site_11834 DeepMRMD:1;iRNA_m5C:0.99953671426467 Leigh syndrome Leigh syndrome 11835 chr11 67376950 67376950 1 + C T rs199702939 67376960 + 67376940 67376980 41 TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG TGAACGCAGATGAGGGGGAGCCGGGCACCTGCAAGGACCGG < 41bp 1 0.479131435807125 1 0.704970061779022 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376960 chr11:67376950 synonymous SNV . 0 11 hm5C_associated_SNPs_9429 1 0 1 0 1 Ribosome 1 0.50020105464935 0.590059876441956 0.999597890701301 hm5C_site_11835 DeepMRMD:0.590059876441956;iRNA_m5C:0.999597890701301 not specified not specified 11836 chr11 67376962 67376962 1 + G A rs140445386 67376960 + 67376940 67376980 41 TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG TGAACGCAGACGAGGGGGAGCCAGGCACCTGCAAGGACCGG < 41bp 1 0.330606336884819 1 0.551296830177307 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376960 chr11:67376962 synonymous SNV . 0 23 hm5C_associated_SNPs_9430 3 0 1 0 1 Ribosome 1 0.500232396663097 0.897406339645386 0.999535206673805 hm5C_site_11836 DeepMRMD:0.897406339645386;iRNA_m5C:0.999535206673805 Mitochondrial complex I deficiency Mitochondrial complex I deficiency 11837 chr11 67782827 67782827 1 + G A rs308293 67782828 + 67782808 67782848 41 CCTTCCACGCGGGGCGCACGCGGCCAGCTGAGTTCCGGGCT CCTTCCACGCGGGGCGCACACGGCCAGCTGAGTTCCGGGCT < 41bp 1 0.692164349820631 1 0.233680784702301 experiment 0.615671300358738 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67782828 chr11:67782827 synonymous SNV . 0 20 hm5C_associated_SNPs_9431 0 0 0 0 1 Ribosome 1 0.500231643904548 1 0.999536712190903 hm5C_site_11837 DeepMRMD:1;iRNA_m5C:0.999536712190903 11838 chr11 67786061 67786061 1 + G A rs529954694 67786067 + 67786047 67786087 41 CACCCTGGCCCTCAGGAACTCCGGGCCTGGATGAAGGACGA CACCCTGGCCCTCAAGAACTCCGGGCCTGGATGAAGGACGA < 41bp 1 0.433714481597875 1 0.754643440246582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67786067 chr11:67786061 nonsynonymous SNV 0.960 0 15 hm5C_associated_SNPs_9432 0 0 0 0 2 Ribosome 1 0.500231643921092 0.490713119506836 0.999536712157815 hm5C_site_11838 DeepMRMD:0.490713119506836;iRNA_m5C:0.999536712157815 11839 chr11 67798125 67798125 1 + C T rs544094420 67798110 + 67798090 67798130 41 CAATACAGAAAAGGGGGAACCCGCTGGCCCAATGGCAGCGT CAATACAGAAAAGGGGGAACCCGCTGGCCCAATGGTAGCGT < 41bp 1 0.324927352498353 1 0.573661804199219 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout NDUFS8 ENSG00000110717 UTR5 Human protein_coding chr11:67798110 chr11:67798125 . . 0 36 hm5C_associated_SNPs_9433 2 0 1 0 1 Ribosome 1 0.50023164388473 0.852676391601562 0.999536712230539 hm5C_site_11839 DeepMRMD:0.852676391601562;iRNA_m5C:0.999536712230539 Leigh syndrome Leigh syndrome 11840 chr11 67804074 67804074 1 + C G rs1051806 67804064 + 67804044 67804084 41 ACTACTTGTATCGGTGACGCCCCACCGGCCCGCAGCCCCTG ACTACTTGTATCGGTGACGCCCCACCGGCCGGCAGCCCCTG < 41bp 1 0.14603654640281 1 0.178425192832947 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFS8 ENSG00000110717 UTR3 Human protein_coding chr11:67804064 chr11:67804074 . . 0 31 hm5C_associated_SNPs_9434 0 0 1 0 0 Ribosome 1 0.5002316642773 1 0.999536671445399 hm5C_site_11840 DeepMRMD:1;iRNA_m5C:0.999536671445399 11841 chr11 67810817 67810817 1 + G C rs370022338 67810831 + 67810811 67810851 41 AGCCCTGCCCAGCCCCGTGGCCGCCAGCTTTGTGGCAGGTG AGCCCTCCCCAGCCCCGTGGCCGCCAGCTTTGTGGCAGGTG < 41bp 1 0.0594366481342803 1 0.28610822558403 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TCIRG1 ENSG00000110719 UTR5 Human protein_coding chr11:67810831 chr11:67810817 . . 0 7 hm5C_associated_SNPs_9435 0 0 1 0 0 Nucleus 1 0.500231643921094 1 0.999536712157811 hm5C_site_11841 DeepMRMD:1;iRNA_m5C:0.999536712157811 11842 chr11 67815400 67815400 1 + C T rs34211419 67815417 + 67815397 67815437 41 CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC CACTGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC < 41bp 1 0.00951800954762625 1 0.0506728291511536 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815417 chr11:67815400 synonymous SNV . 0 4 hm5C_associated_SNPs_9436 2 0 1 0 2 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_11842 DeepMRMD:1;iRNA_m5C:0.999536712157812 not specified not specified 11843 chr11 67818114 67818114 1 + C T rs141356870 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTCAGCCTTCCTGCATGCCCTGCGGC < 41bp 1 0.0318991623165925 1 0.35627681016922 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818114 synonymous SNV . 0 31 hm5C_associated_SNPs_9437 1 0 1 0 2 Nucleus 1 0.500231643921308 1 0.999536712157383 hm5C_site_11843 DeepMRMD:1;iRNA_m5C:0.999536712157383 not specified not specified 11844 chr11 67818114 67818114 1 + C T rs141356870 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTCAGCCTTCCTGCATGCCCTGCGGCT < 41bp 1 0.124087311019479 1 0.452183187007904 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818114 synonymous SNV . 0 30 hm5C_associated_SNPs_9438 1 0 1 0 2 Nucleus 1 0.500231644016373 1 0.999536711967254 hm5C_site_11844 DeepMRMD:1;iRNA_m5C:0.999536711967254 not specified not specified 11845 chr11 68177414 68177414 1 + G A rs140977837 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CGCCTTCATGAACGGGAGCTCAGTGGAGCACGTGGTGGAGT < 41bp 1 0.409089661708737 1 0.374376326799393 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177414 synonymous SNV . 0 22 hm5C_associated_SNPs_9439 1 0 0 0 1 Endoplasmic reticulum 1 0.500231655852895 1 0.99953668829421 hm5C_site_11845 DeepMRMD:1;iRNA_m5C:0.99953668829421 not specified not specified 11846 chr11 68177423 68177423 1 + C T rs33958013 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CGCCTTCATGAACGGGAGCTCGGTGGAGCATGTGGTGGAGT < 41bp 1 0.395285393733856 1 0.427719473838806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177423 synonymous SNV . 0 31 hm5C_associated_SNPs_9440 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643916121 1 0.999536712167758 hm5C_site_11846 DeepMRMD:1;iRNA_m5C:0.999536712167758 11847 chr11 68177429 68177429 1 + G A rs34369535 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTAGAGT < 41bp 1 0.421076590760062 1 0.531676650047302 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177429 synonymous SNV . 0 37 hm5C_associated_SNPs_9441 1 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.936646699905396 0.999536712157815 hm5C_site_11847 DeepMRMD:0.936646699905396;iRNA_m5C:0.999536712157815 not specified not specified 11848 chr11 68204445 68204445 1 + C T rs3736229 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGATGGCTCCGACGAGCTCATGTGTGGTG < 41bp 1 0.151737237224567 1 0.105746060609818 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204445 synonymous SNV . 0 16 hm5C_associated_SNPs_9442 1 0 1 0 2 Endoplasmic reticulum 1 0.500231643921567 1 0.999536712156867 hm5C_site_11848 DeepMRMD:1;iRNA_m5C:0.999536712156867 not specified not specified 11849 chr11 68204445 68204445 1 + C T rs3736229 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGATGGCTCCGACGAGCTCATGTGTGGTGA < 41bp 1 0.407743044767799 1 0.465917944908142 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204445 synonymous SNV . 0 15 hm5C_associated_SNPs_9443 1 0 1 0 2 Endoplasmic reticulum 1 0.500231643920905 1 0.999536712158189 hm5C_site_11849 DeepMRMD:1;iRNA_m5C:0.999536712158189 not specified not specified 11850 chr11 68213989 68213989 1 + C G rs1127291 68213986 + 68213966 68214006 41 CTCTTCAAACATTCCGGCCACTGCGAGACCGTACAGGTAGG CTCTTCAAACATTCCGGCCACTGGGAGACCGTACAGGTAGG < 41bp 1 0.514451617269969 1 0.60842752456665 experiment 0.971096765460061 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68213986 chr11:68213989 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_9444 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643970253 0.7831449508667 0.999536712059493 hm5C_site_11850 DeepMRMD:0.7831449508667;iRNA_m5C:0.999536712059493 11851 chr11 68671419 68671419 1 + C T rs4930624 68671416 + 68671396 68671436 41 CTAGGGGCCCAGGCCGGCGGCGGCGATGGCCTCGGCAGCTG CTAGGGGCCCAGGCCGGCGGCGGTGATGGCCTCGGCAGCTG < 41bp 1 0.695264675274597 1 0.769588828086853 experiment 0.609470649450806 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control IGHMBP2 ENSG00000132740 UTR5 Human protein_coding chr11:68671416 chr11:68671419 . . 0 24 hm5C_associated_SNPs_9445 2 0 1 0 1 chromatin 1 0.500231643921076 0.460822343826294 0.999536712157849 hm5C_site_11851 DeepMRMD:0.460822343826294;iRNA_m5C:0.999536712157849 not specified not specified 11852 chr11 68707454 68707454 1 + T C rs564244 68707463 + 68707443 68707483 41 TCCCTTCCCCTTACTCCCCGCCAAAACCCACATCCCAGCCT TCCCTTCCCCTCACTCCCCGCCAAAACCCACATCCCAGCCT < 41bp 1 0.17055982016506 1 0.189378708600998 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGHMBP2 ENSG00000132740 UTR3 Human protein_coding chr11:68707463 chr11:68707454 . . 0 12 hm5C_associated_SNPs_9446 1 0 1 0 0 chromatin 1 0.500231643921422 1 0.999536712157156 hm5C_site_11852 DeepMRMD:1;iRNA_m5C:0.999536712157156 Spinal muscular atrophy Spinal muscular atrophy 11853 chr11 68822721 68822721 1 + C T rs199768477 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGATGTGCGCTACCGCGCTGCTCCCTGGGA < 41bp 1 0.442540931353529 1 0.0579421818256378 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822721 synonymous SNV . 0 15 hm5C_associated_SNPs_9447 0 0 0 0 2 chromatin 1 0.500231672137277 1 0.999536655725446 hm5C_site_11853 DeepMRMD:1;iRNA_m5C:0.999536655725446 11854 chr11 68822739 68822739 1 + T A rs1470892 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTACCGCGCTGCACCCTGGGA < 41bp 1 0.412363311470606 1 0.0855731070041656 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822739 synonymous SNV . 0 33 hm5C_associated_SNPs_9448 0 0 0 0 2 chromatin 1 0.500231648387057 1 0.999536703225886 hm5C_site_11854 DeepMRMD:1;iRNA_m5C:0.999536703225886 11855 chr11 69466115 69466115 1 + C A rs7177 69466128 + 69466108 69466148 41 GTGCTCCCCTGACAGTCCCTCCTCTCCGGAGCATTTTGATA GTGCTCCACTGACAGTCCCTCCTCTCCGGAGCATTTTGATA < 41bp 1 0.042371788426563 1 0.120230913162231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CCND1 ENSG00000110092 UTR3 Human protein_coding chr11:69466128 chr11:69466115 . . 0 8 hm5C_associated_SNPs_9449 0 0 1 0 0 Ribosome 1 0.500231643920033 1 0.999536712159935 hm5C_site_11855 DeepMRMD:1;iRNA_m5C:0.999536712159935 11856 chr11 69466115 69466115 1 + C A rs7177 69466129 + 69466109 69466149 41 TGCTCCCCTGACAGTCCCTCCTCTCCGGAGCATTTTGATAC TGCTCCACTGACAGTCCCTCCTCTCCGGAGCATTTTGATAC < 41bp 1 0.136327667412333 1 0.258951812982559 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CCND1 ENSG00000110092 UTR3 Human protein_coding chr11:69466129 chr11:69466115 . . 0 7 hm5C_associated_SNPs_9450 0 0 1 0 0 Ribosome 1 0.500232082398 1 0.999535835204 hm5C_site_11856 DeepMRMD:1;iRNA_m5C:0.999535835204 11857 chr11 70053224 70053224 1 + G A rs149373917 70053212 + 70053192 70053232 41 CCCTGTGTGAGTTGAGTCTCCTCTCTGAGACTGCTAAGTAG CCCTGTGTGAGTTGAGTCTCCTCTCTGAGACTACTAAGTAG < 41bp 1 0.426218520053136 1 0.0930450260639191 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADD ENSG00000254721 ncRNA_exonic Human antisense chr11:70053212 chr11:70053224 . . 0 33 hm5C_associated_SNPs_9451 0 0 1 0 0 Ribosome 1 0.500231655133173 1 0.999536689733654 hm5C_site_11857 DeepMRMD:1;iRNA_m5C:0.999536689733654 11858 chr11 70229747 70229747 1 + T C rs115252708 70229732 + 70229712 70229752 41 AAATGGCTGGTGTTAAATATCAGCTCCTAATAAGATGTGGA AAATGGCTGGTGTTAAATATCAGCTCCTAATAAGACGTGGA < 41bp 1 0.258764392627154 1 0.496349692344666 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPFIA1 ENSG00000246889 ncRNA_intronic Human antisense chr11:70229732 chr11:70229747 . . 0 36 hm5C_associated_SNPs_9452 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11858 DeepMRMD:1;iRNA_m5C:0.999536712157815 11859 chr11 70253475 70253475 1 + C T rs2298397 70253474 + 70253454 70253494 41 GGGGGCCGATGACTGGGAGACCGACCCTGATTTTGTGGTAG GGGGGCCGATGACTGGGAGACTGACCCTGATTTTGTGGTAG < 41bp 1 0.317682852082152 1 0.193307220935822 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70253474 chr11:70253475 synonymous SNV . 0 22 hm5C_associated_SNPs_9453 0 0 1 0 2 Ribosome 1 0.500231646447908 1 0.999536707104184 hm5C_site_11859 DeepMRMD:1;iRNA_m5C:0.999536707104184 Body mass index 11860 chr11 70275242 70275242 1 + G A rs114157745 70275262 + 70275242 70275282 41 GGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG AGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG < 41bp 1 0.428617713078125 1 0.408005774021149 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275262 chr11:70275242 synonymous SNV . 0 1 hm5C_associated_SNPs_9454 0 0 1 0 2 Ribosome 1 0.500231643920821 1 0.999536712158357 hm5C_site_11860 DeepMRMD:1;iRNA_m5C:0.999536712158357 11861 chr11 70282012 70282012 1 + C T rs115120216 70282032 + 70282012 70282052 41 CGGGTCTCTGGATTGGGACGCACAGTGCAGTTGAGGTCTGC TGGGTCTCTGGATTGGGACGCACAGTGCAGTTGAGGTCTGC < 41bp 1 0.468590272395814 1 0.215742290019989 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTTN ENSG00000085733 UTR3 Human protein_coding chr11:70282032 chr11:70282012 . . 0 1 hm5C_associated_SNPs_9455 0 0 1 0 0 Ribosome 1 0.500231686216376 1 0.999536627567248 hm5C_site_11861 DeepMRMD:1;iRNA_m5C:0.999536627567248 11862 chr11 71191891 71191891 1 + G A rs138969547 71191878 + 71191858 71191898 41 GAGGACTTGCTGGCACCCATCTCTGAGCCCATCGAGTGGAA GAGGACTTGCTGGCACCCATCTCTGAGCCCATCAAGTGGAA < 41bp 1 0.454098532960748 1 0.812594592571259 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71191878 chr11:71191891 nonsynonymous SNV 0.598 0 34 hm5C_associated_SNPs_9456 0 0 1 0 2 Ribosome 1 0.500231643921057 0.374810814857482 0.999536712157886 hm5C_site_11862 DeepMRMD:0.374810814857482;iRNA_m5C:0.999536712157886 11863 chr11 71209499 71209499 1 + G A rs145428769 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GCGTACCACGCCGAGAACTACAGCCCTGAAGACAACAGGTT < 41bp 1 0.199538068748749 1 0.349709898233414 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209499 synonymous SNV . 0 30 hm5C_associated_SNPs_9457 0 0 1 0 1 Ribosome 1 0.500231643921799 1 0.999536712156401 hm5C_site_11863 DeepMRMD:1;iRNA_m5C:0.999536712156401 11864 chr11 71502813 71502813 1 + A C rs200557451 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCCCCCGCCGTCAGTCAAGTAT < 41bp 1 0.0770596046537494 1 0.354511380195618 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502813 nonsynonymous SNV 0.891 2 22 hm5C_associated_SNPs_9458 0 0 0 0 3 Ribosome 1 0.500231654169288 1 0.999536691661424 hm5C_site_11864 DeepMRMD:1;iRNA_m5C:0.999536691661424 11865 chr11 71502828 71502828 1 + A G rs138407900 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAGGTAT < 41bp 1 0.221174313993642 1 0.536006152629852 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502828 nonsynonymous SNV 0.846 0 37 hm5C_associated_SNPs_9459 0 0 0 0 3 Ribosome 1 0.500231838001435 0.927987694740296 0.999536323997129 hm5C_site_11865 DeepMRMD:0.927987694740296;iRNA_m5C:0.999536323997129 11866 chr11 71502832 71502832 1 + T A rs551563338 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAA < 41bp 1 0.219217462607657 1 0.533987700939178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502832 stopgain 0.851 0 41 hm5C_associated_SNPs_9460 0 0 0 0 3 Ribosome 1 0.500230296804146 0.932024598121644 0.999539406391709 hm5C_site_11866 DeepMRMD:0.932024598121644;iRNA_m5C:0.999539406391709 11867 chr11 71708200 71708200 1 + G A rs76430787 71708203 + 71708183 71708223 41 TGGTGACACGTGCCAGCGGTCACTCTGCCACATCACTTCCT TGGTGACACGTGCCAGCAGTCACTCTGCCACATCACTTCCT < 41bp 1 0.320911087712504 1 0.112572729587555 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF121 ENSG00000137522 UTR3 Human protein_coding chr11:71708203 chr11:71708200 . . 0 18 hm5C_associated_SNPs_9461 0 0 1 0 0 Nucleus 1 0.500231643936962 1 0.999536712126076 hm5C_site_11867 DeepMRMD:1;iRNA_m5C:0.999536712126076 11868 chr11 71791491 71791491 1 + C A rs185830107 71791471 - 71791451 71791491 41 GGCCCGCGTTTGGCGTGCGGCCTGGGCACCCCTGCGGGTGC TGCCCGCGTTTGGCGTGCGGCCTGGGCACCCCTGCGGGTGC < 41bp 1 0.226533328695174 1 0.261387944221497 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRTOMT ENSG00000137497;ENSG00000184154 UTR5 Human other chr11:71791471 chr11:71791491 . . 0 1 hm5C_associated_SNPs_9462 1 0 1 0 0 Cytosol 1 0.500231643921136 1 0.999536712157729 hm5C_site_11868 DeepMRMD:1;iRNA_m5C:0.999536712157729 Nonsyndromic Hearing Loss, Recessive Nonsyndromic Hearing Loss, Recessive 11869 chr11 71935955 71935955 1 + G C rs368831164 71935945 + 71935925 71935965 41 CCTCAAGCCCGGGCCCCGGGCCCGGCCCCAGCCTCAGCCCT CCTCAAGCCCGGGCCCCGGGCCCGGCCCCACCCTCAGCCCT < 41bp 1 0.577257457916747 1 0.261160492897034 experiment 0.845485084166507 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control INPPL1 ENSG00000165458 UTR5 Human protein_coding chr11:71935945 chr11:71935955 . . 0 31 hm5C_associated_SNPs_9463 0 0 1 0 0 Cytosol 1 0.500231643939716 1 0.999536712120569 hm5C_site_11869 DeepMRMD:1;iRNA_m5C:0.999536712120569 11870 chr11 71935955 71935955 1 + G C rs368831164 71935946 + 71935926 71935966 41 CTCAAGCCCGGGCCCCGGGCCCGGCCCCAGCCTCAGCCCTG CTCAAGCCCGGGCCCCGGGCCCGGCCCCACCCTCAGCCCTG < 41bp 1 0.357496793521501 1 0.147614061832428 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INPPL1 ENSG00000165458 UTR5 Human protein_coding chr11:71935946 chr11:71935955 . . 0 30 hm5C_associated_SNPs_9464 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11870 DeepMRMD:1;iRNA_m5C:0.999536712157815 11871 chr11 71935955 71935955 1 + G C rs368831164 71935947 + 71935927 71935967 41 TCAAGCCCGGGCCCCGGGCCCGGCCCCAGCCTCAGCCCTGA TCAAGCCCGGGCCCCGGGCCCGGCCCCACCCTCAGCCCTGA < 41bp 1 0.612685110018075 1 0.765957057476044 experiment 0.774629779963851 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 UTR5 Human protein_coding chr11:71935947 chr11:71935955 . . 0 29 hm5C_associated_SNPs_9465 0 0 1 0 0 Cytosol 1 0.500231650463538 0.468085885047912 0.999536699072925 hm5C_site_11871 DeepMRMD:0.468085885047912;iRNA_m5C:0.999536699072925 11872 chr11 71936141 71936141 1 + C T rs543631142 71936135 + 71936115 71936155 41 GGCCGCGGAGGAGCTGCTGGCCCGGGCGGGCCGCGATGGCA GGCCGCGGAGGAGCTGCTGGCCCGGGTGGGCCGCGATGGCA < 41bp 1 0.665304421390752 1 0.538396298885345 experiment 0.669391157218495 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71936135 chr11:71936141 nonsynonymous SNV 0.998 5 27 hm5C_associated_SNPs_9466 0 0 1 0 1 Cytosol 1 0.500231643979922 0.92320740222931 0.999536712040156 hm5C_site_11872 DeepMRMD:0.92320740222931;iRNA_m5C:0.999536712040156 11873 chr11 71941212 71941212 1 + A G rs2276048 71941211 + 71941191 71941231 41 CCTGACCAAGATTGGGAAGTCACAGAAGTTCACGCTGAGCG CCTGACCAAGATTGGGAAGTCGCAGAAGTTCACGCTGAGCG < 41bp 1 0.514435379675363 1 0.559022724628448 experiment 0.971129240649274 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71941211 chr11:71941212 synonymous SNV . 0 22 hm5C_associated_SNPs_9467 0 0 1 0 1 Cytosol 1 0.50023164389273 0.881954550743104 0.99953671221454 hm5C_site_11873 DeepMRMD:0.881954550743104;iRNA_m5C:0.99953671221454 11874 chr11 71945332 71945332 1 + A G rs61736312 71945331 + 71945311 71945351 41 CCCTTTCTCCTCAGGGCTCTCAAAGACTTCAGACCAGGCCT CCCTTTCTCCTCAGGGCTCTCGAAGACTTCAGACCAGGCCT < 41bp 1 0.389107934466627 1 0.860606670379639 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71945331 chr11:71945332 synonymous SNV . 0 22 hm5C_associated_SNPs_9468 0 0 1 0 1 Cytosol 1 0.500231643921083 0.278786659240722 0.999536712157834 hm5C_site_11874 DeepMRMD:0.278786659240722;iRNA_m5C:0.999536712157834 11875 chr11 71949665 71949665 1 + G C rs9886 71949677 + 71949657 71949697 41 GCTGTCCTGTTTTACTGGACCCCGCCTCCCAGCCCCAGGGG GCTGTCCTCTTTTACTGGACCCCGCCTCCCAGCCCCAGGGG < 41bp 1 0.274152626544425 1 0.0651453137397766 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 UTR3 Human protein_coding chr11:71949677 chr11:71949665 . . 0 9 hm5C_associated_SNPs_9470 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11875 DeepMRMD:1;iRNA_m5C:0.999536712157815 11876 chr11 71949724 71949724 1 + T C rs70940823 71949730 + 71949710 71949750 41 TCCATTTGGGTACGTCTGGGCCCCCACTTTCACCAGTTTCT TCCATTTGGGTACGCCTGGGCCCCCACTTTCACCAGTTTCT < 41bp 1 0.0762354021491082 1 0.0440005958080292 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INPPL1 ENSG00000165458 UTR3 Human protein_coding chr11:71949730 chr11:71949724 . . 0 15 hm5C_associated_SNPs_9471 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11876 DeepMRMD:1;iRNA_m5C:0.999536712157815 11877 chr11 71949724 71949724 1 + T C rs70940823 71949732 + 71949712 71949752 41 CATTTGGGTACGTCTGGGCCCCCACTTTCACCAGTTTCTGC CATTTGGGTACGCCTGGGCCCCCACTTTCACCAGTTTCTGC < 41bp 1 0.118852813320239 1 0.0174606144428253 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INPPL1 ENSG00000165458 UTR3 Human protein_coding chr11:71949732 chr11:71949724 . . 0 13 hm5C_associated_SNPs_9472 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11877 DeepMRMD:1;iRNA_m5C:0.999536712157815 11878 chr11 71949724 71949724 1 + T C rs70940823 71949733 + 71949713 71949753 41 ATTTGGGTACGTCTGGGCCCCCACTTTCACCAGTTTCTGCG ATTTGGGTACGCCTGGGCCCCCACTTTCACCAGTTTCTGCG < 41bp 1 0.208197855175853 1 0.0662630796432495 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INPPL1 ENSG00000165458 UTR3 Human protein_coding chr11:71949733 chr11:71949724 . . 0 12 hm5C_associated_SNPs_9473 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11878 DeepMRMD:1;iRNA_m5C:0.999536712157815 11879 chr11 71949724 71949724 1 + T C rs70940823 71949734 + 71949714 71949754 41 TTTGGGTACGTCTGGGCCCCCACTTTCACCAGTTTCTGCGG TTTGGGTACGCCTGGGCCCCCACTTTCACCAGTTTCTGCGG < 41bp 1 0.394136110270264 1 0.0488653182983398 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INPPL1 ENSG00000165458 UTR3 Human protein_coding chr11:71949734 chr11:71949724 . . 0 11 hm5C_associated_SNPs_9474 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11879 DeepMRMD:1;iRNA_m5C:0.999536712157815 11880 chr11 73007954 73007954 1 + C A rs562668106 73007963 + 73007943 73007983 41 GCATCTGCCACCCGCTGGCCCCCTGGCACAAACGTGGGGGC GCATCTGCCACACGCTGGCCCCCTGGCACAAACGTGGGGGC < 41bp 1 0.200971254803795 1 0.0733475387096405 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control P2RY6 ENSG00000171631 CDS Human protein_coding chr11:73007963 chr11:73007954 nonsynonymous SNV 0.916 4 12 hm5C_associated_SNPs_9476 0 0 0 0 0 exosome 1 0.500231644088305 1 0.99953671182339 hm5C_site_11880 DeepMRMD:1;iRNA_m5C:0.99953671182339 11881 chr11 73020399 73020399 1 + C A rs147871402 73020409 + 73020389 73020429 41 ATCGCCGCCTCCTATCCTGTCAGCCGCAGTCGTGCTGCCAG ATCGCCGCCTACTATCCTGTCAGCCGCAGTCGTGCTGCCAG < 41bp 1 0.348603408133803 1 0.258258998394012 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73020409 chr11:73020399 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_9478 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11881 DeepMRMD:1;iRNA_m5C:0.999536712157815 11882 chr11 73021084 73021084 1 + C T rs3741149 73021096 + 73021076 73021116 41 CCAGATATCGCCTCAGAGACCCTGACGCTTCTCAGTTTCCT CCAGATATTGCCTCAGAGACCCTGACGCTTCTCAGTTTCCT < 41bp 1 0.0899613589450662 1 0.0489362478256226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73021096 chr11:73021084 synonymous SNV . 0 9 hm5C_associated_SNPs_9479 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11882 DeepMRMD:1;iRNA_m5C:0.999536712157815 11883 chr11 73022615 73022615 1 + G T rs149581120 73022597 + 73022577 73022617 41 CATTTATGCCTATTGTGGTGCCTGAGCCACCAACTTCTGTT CATTTATGCCTATTGTGGTGCCTGAGCCACCAACTTCTTTT < 41bp 1 0.0560387792199279 1 0.0155595541000366 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73022597 chr11:73022615 nonsynonymous SNV 0.000 1 39 hm5C_associated_SNPs_9480 0 0 1 0 0 Cytosol 1 0.500231643921032 1 0.999536712157936 hm5C_site_11883 DeepMRMD:1;iRNA_m5C:0.999536712157936 11884 chr11 73073118 73073118 1 + C T rs369232606 73073111 + 73073091 73073131 41 TGTGCGGCTCCCACCCTGAACAGCTGCCCGGAGCCCTCGCC TGTGCGGCTCCCACCCTGAACAGCTGCTCGGAGCCCTCGCC < 41bp 1 0.402633333876264 1 0.297950208187103 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73073111 chr11:73073118 nonsynonymous SNV 0.388 1 28 hm5C_associated_SNPs_9481 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11884 DeepMRMD:1;iRNA_m5C:0.999536712157815 11885 chr11 73073715 73073715 1 + G A rs138108633 73073732 + 73073712 73073752 41 TTCGCCCAGCCCCTCGGGGACGCTGCAGAGCCAGGCCAGCC TTCACCCAGCCCCTCGGGGACGCTGCAGAGCCAGGCCAGCC < 41bp 1 0.163761712930329 1 0.260745584964752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73073732 chr11:73073715 synonymous SNV . 0 4 hm5C_associated_SNPs_9482 0 0 0 0 1 Cytosol 1 0.500231643921081 1 0.999536712157838 hm5C_site_11885 DeepMRMD:1;iRNA_m5C:0.999536712157838 11886 chr11 73078684 73078684 1 + C G rs144429256 73078683 + 73078663 73078703 41 CTCCCCTTGGCACCGAGGCCCCGCCCCTGCCAGGCCTAAAA CTCCCCTTGGCACCGAGGCCCGGCCCCTGCCAGGCCTAAAA < 41bp 1 0.121763844553246 1 0.3888238966465 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73078683 chr11:73078684 synonymous SNV . 0 22 hm5C_associated_SNPs_9483 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11886 DeepMRMD:1;iRNA_m5C:0.999536712157815 11887 chr11 73078685 73078685 1 + G A rs143114785 73078683 + 73078663 73078703 41 CTCCCCTTGGCACCGAGGCCCCGCCCCTGCCAGGCCTAAAA CTCCCCTTGGCACCGAGGCCCCACCCCTGCCAGGCCTAAAA < 41bp 1 0.0217136609933436 1 0.0651423633098602 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73078683 chr11:73078685 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_9484 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11887 DeepMRMD:1;iRNA_m5C:0.999536712157815 11888 chr11 73360041 73360041 1 + G A rs138039493 73360060 + 73360040 73360080 41 CGTGGCTCCTCTGACAGGTCCCGCCTGACTCCGCTCTGGAA CATGGCTCCTCTGACAGGTCCCGCCTGACTCCGCTCTGGAA < 41bp 1 0.0916831883448067 1 0.0486797094345093 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHB1 ENSG00000021300 UTR5 Human protein_coding chr11:73360060 chr11:73360041 . . 0 2 hm5C_associated_SNPs_9485 0 0 1 0 0 membrane 1 0.500231643929746 1 0.999536712140507 hm5C_site_11888 DeepMRMD:1;iRNA_m5C:0.999536712140507 11889 chr11 73575499 73575499 1 + G A rs1051090 73575502 + 73575482 73575522 41 GTTAGAGTTCATCAGGAGACCCAACCCTTAGATTTCATAAG GTTAGAGTTCATCAGGAAACCCAACCCTTAGATTTCATAAG < 41bp 1 0.202640642397866 1 0.377339839935303 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL48 ENSG00000175581 UTR3 Human protein_coding chr11:73575502 chr11:73575499 . . 0 18 hm5C_associated_SNPs_9486 0 0 1 1 0 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_11889 DeepMRMD:1;iRNA_m5C:0.999536712157813 11890 chr11 73575504 73575504 1 + A G rs12262 73575502 + 73575482 73575522 41 GTTAGAGTTCATCAGGAGACCCAACCCTTAGATTTCATAAG GTTAGAGTTCATCAGGAGACCCGACCCTTAGATTTCATAAG < 41bp 1 0.231883954994005 1 0.235652834177017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL48 ENSG00000175581 UTR3 Human protein_coding chr11:73575502 chr11:73575504 . . 0 23 hm5C_associated_SNPs_9487 0 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11890 DeepMRMD:1;iRNA_m5C:0.999536712157815 11891 chr11 73882434 73882434 1 + A G rs192487999 73882450 + 73882430 73882470 41 GCCTACTGTTTGACTACGTGCGTGCAGCCTCCCCTCGATGT GCCTGCTGTTTGACTACGTGCGTGCAGCCTCCCCTCGATGT < 41bp 1 0.474173762236392 1 0.0743888020515442 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPME1 ENSG00000214517 UTR5 Human protein_coding chr11:73882450 chr11:73882434 . . 0 5 hm5C_associated_SNPs_9488 0 0 1 0 0 Ribosome 1 0.500231643918412 1 0.999536712163176 hm5C_site_11891 DeepMRMD:1;iRNA_m5C:0.999536712163176 11892 chr11 74329609 74329609 1 + C A rs148419916 74329602 + 74329582 74329622 41 ATTTAGTGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTC ATTTAGTGCTATACAATGTGCAGCTGCAGTCCCTAGAGCTC < 41bp 1 0.393451305514039 1 0.227997422218323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329602 chr11:74329609 synonymous SNV . 0 28 hm5C_associated_SNPs_9489 0 0 1 0 1 Nucleus 1 0.500231750141712 1 0.999536499716577 hm5C_site_11892 DeepMRMD:1;iRNA_m5C:0.999536499716577 11893 chr11 74329609 74329609 1 + C A rs148419916 74329605 + 74329585 74329625 41 TAGTGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTG TAGTGCTATACAATGTGCAGCTGCAGTCCCTAGAGCTCCTG < 41bp 1 0.597451604961904 1 0.241962045431137 experiment 0.805096790076192 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329605 chr11:74329609 synonymous SNV . 0 25 hm5C_associated_SNPs_9490 0 0 1 0 1 Nucleus 1 0.500231643921095 1 0.99953671215781 hm5C_site_11893 DeepMRMD:1;iRNA_m5C:0.99953671215781 11894 chr11 74329609 74329609 1 + C A rs148419916 74329608 + 74329588 74329628 41 TGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTG TGCTATACAATGTGCAGCTGCAGTCCCTAGAGCTCCTGCTG < 41bp 1 0.145936051428532 1 0.220029950141907 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329608 chr11:74329609 synonymous SNV . 0 22 hm5C_associated_SNPs_9491 0 0 1 0 1 Nucleus 1 0.500231458584675 1 0.99953708283065 hm5C_site_11894 DeepMRMD:1;iRNA_m5C:0.99953708283065 11895 chr11 74329609 74329609 1 + C A rs148419916 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTGCAGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT < 41bp 1 0.647734973930755 1 0.102852493524551 experiment 0.70453005213849 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329609 synonymous SNV . 0 7 hm5C_associated_SNPs_9492 0 0 1 0 1 Nucleus 1 0.500231645005445 1 0.99953670998911 hm5C_site_11895 DeepMRMD:1;iRNA_m5C:0.99953670998911 11896 chr11 74329609 74329609 1 + C A rs148419916 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TGCAGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA < 41bp 1 0.683777694898591 1 0.261715471744537 experiment 0.632444610202819 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329609 synonymous SNV . 0 4 hm5C_associated_SNPs_9493 0 0 1 0 1 Nucleus 1 0.500231674989754 1 0.999536650020493 hm5C_site_11896 DeepMRMD:1;iRNA_m5C:0.999536650020493 11897 chr11 74329615 74329615 1 + T C rs4944052 74329602 + 74329582 74329622 41 ATTTAGTGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTC ATTTAGTGCTATACAATGTGCAGCTGCCGTCCCCAGAGCTC < 41bp 1 0.412159670119588 1 0.186420470476151 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329602 chr11:74329615 synonymous SNV . 0 34 hm5C_associated_SNPs_9494 0 0 1 0 1 Nucleus 1 0.500232775869214 1 0.999534448261573 hm5C_site_11897 DeepMRMD:1;iRNA_m5C:0.999534448261573 11898 chr11 74329615 74329615 1 + T C rs4944052 74329605 + 74329585 74329625 41 TAGTGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTG TAGTGCTATACAATGTGCAGCTGCCGTCCCCAGAGCTCCTG < 41bp 1 0.238221917447334 1 0.0844994485378265 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329605 chr11:74329615 synonymous SNV . 0 31 hm5C_associated_SNPs_9495 0 0 1 0 1 Nucleus 1 0.500231643921076 1 0.999536712157848 hm5C_site_11898 DeepMRMD:1;iRNA_m5C:0.999536712157848 11899 chr11 74329615 74329615 1 + T C rs4944052 74329608 + 74329588 74329628 41 TGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTG TGCTATACAATGTGCAGCTGCCGTCCCCAGAGCTCCTGCTG < 41bp 1 0.0562773338635109 1 0.0530762076377869 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329608 chr11:74329615 synonymous SNV . 0 28 hm5C_associated_SNPs_9496 0 0 1 0 1 Nucleus 1 0.500231647479162 1 0.999536705041676 hm5C_site_11899 DeepMRMD:1;iRNA_m5C:0.999536705041676 11900 chr11 74329615 74329615 1 + T C rs4944052 74329609 + 74329589 74329629 41 GCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTGA GCTATACAATGTGCAGCTGCCGTCCCCAGAGCTCCTGCTGA < 41bp 1 0.144968584225534 1 0.17559227347374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329609 chr11:74329615 synonymous SNV . 0 27 hm5C_associated_SNPs_9497 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11900 DeepMRMD:1;iRNA_m5C:0.999536712157815 11901 chr11 74329615 74329615 1 + T C rs4944052 74329614 + 74329594 74329634 41 ACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTGAATCCT ACAATGTGCAGCTGCCGTCCCCAGAGCTCCTGCTGAATCCT < 41bp 1 0.558904622309459 1 0.502743005752563 experiment 0.882190755381081 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329614 chr11:74329615 synonymous SNV . 0 22 hm5C_associated_SNPs_9498 0 0 1 0 1 Nucleus 1 0.500231643910248 0.994513988494874 0.999536712179504 hm5C_site_11901 DeepMRMD:0.994513988494874;iRNA_m5C:0.999536712179504 11902 chr11 74329615 74329615 1 + T C rs4944052 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTGCCGTCCCCAGAGCTCCTGCTGAATCCTCTTCGTCTT < 41bp 1 0.609958062706653 1 0.124752104282379 experiment 0.780083874586695 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329615 synonymous SNV . 0 13 hm5C_associated_SNPs_9499 0 0 1 0 1 Nucleus 1 0.500231659158898 1 0.999536681682204 hm5C_site_11902 DeepMRMD:1;iRNA_m5C:0.999536681682204 11903 chr11 74329615 74329615 1 + T C rs4944052 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TGCCGTCCCCAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA < 41bp 1 0.690727217703576 1 0.203225016593933 experiment 0.618545564592848 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329615 synonymous SNV . 0 10 hm5C_associated_SNPs_9500 0 0 1 0 1 Nucleus 1 0.500338775085188 1 0.999322449829625 hm5C_site_11903 DeepMRMD:1;iRNA_m5C:0.999322449829625 11904 chr11 74329615 74329615 1 + T C rs4944052 74329633 + 74329613 74329653 41 CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT CCCAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT < 41bp 1 0.116022947410793 1 0.0903134942054749 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329633 chr11:74329615 synonymous SNV . 0 3 hm5C_associated_SNPs_9501 0 0 1 0 1 Nucleus 1 0.500231643921519 1 0.999536712156962 hm5C_site_11904 DeepMRMD:1;iRNA_m5C:0.999536712156962 11905 chr11 74329638 74329638 1 + C G rs116112251 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTGGTCTT < 41bp 1 0.562709783534711 1 0.0899827778339386 experiment 0.874580432930579 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329638 nonsynonymous SNV 0.993 3 36 hm5C_associated_SNPs_9502 0 0 0 0 1 Nucleus 1 0.500231643923252 1 0.999536712153495 hm5C_site_11905 DeepMRMD:1;iRNA_m5C:0.999536712153495 11906 chr11 74329638 74329638 1 + C G rs116112251 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTGGTCTTCCA < 41bp 1 0.680377036125161 1 0.438082784414291 experiment 0.639245927749678 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329638 nonsynonymous SNV 0.993 3 33 hm5C_associated_SNPs_9503 0 0 0 0 1 Nucleus 1 0.500231614597141 1 0.999536770805717 hm5C_site_11906 DeepMRMD:1;iRNA_m5C:0.999536770805717 11907 chr11 74329638 74329638 1 + C G rs116112251 74329633 + 74329613 74329653 41 CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT CCTAGAGCTCCTGCTGAATCCTCTTGGTCTTCCAAAAAGTT < 41bp 1 0.204177462715733 1 0.114114373922348 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329633 chr11:74329638 nonsynonymous SNV 0.993 3 26 hm5C_associated_SNPs_9504 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11907 DeepMRMD:1;iRNA_m5C:0.999536712157815 11908 chr11 74329638 74329638 1 + C G rs116112251 74329645 + 74329625 74329665 41 GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA GCTGAATCCTCTTGGTCTTCCAAAAAGTTTGAGCAGTCACA < 41bp 1 0.487195101352825 1 0.753594398498535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329645 chr11:74329638 nonsynonymous SNV 0.993 3 14 hm5C_associated_SNPs_9505 0 0 0 0 1 Nucleus 1 0.500233201623338 0.49281120300293 0.999533596753324 hm5C_site_11908 DeepMRMD:0.49281120300293;iRNA_m5C:0.999533596753324 11909 chr11 74353107 74353107 1 + C T rs3824998 74353126 + 74353106 74353146 41 ACGTAGCAGACAAGGGGTGTCTGACTGGCTTCTTTTGCCTC ATGTAGCAGACAAGGGGTGTCTGACTGGCTTCTTTTGCCTC < 41bp 1 0.605312853765509 1 0.258731544017792 experiment 0.789374292468982 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD3 ENSG00000077514 UTR3 Human protein_coding chr11:74353126 chr11:74353107 . . 0 2 hm5C_associated_SNPs_9506 0 0 1 0 0 Nucleus 1 0.500231658034685 1 0.99953668393063 hm5C_site_11909 DeepMRMD:1;iRNA_m5C:0.99953668393063 11910 chr11 74353161 74353161 1 + C T rs557954215 74353176 + 74353156 74353196 41 TATGTCGTAAGTGATGCAATCAGCTGTCTGCTTTTTAAGGT TATGTTGTAAGTGATGCAATCAGCTGTCTGCTTTTTAAGGT < 41bp 1 0.676119682154945 1 0.528456628322601 experiment 0.647760635690109 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD3 ENSG00000077514 UTR3 Human protein_coding chr11:74353176 chr11:74353161 . . 0 6 hm5C_associated_SNPs_9507 0 0 1 1 0 Nucleus 1 0.500248005101029 0.943086743354798 0.999503989797943 hm5C_site_11910 DeepMRMD:0.943086743354798;iRNA_m5C:0.999503989797943 11911 chr11 74459991 74459991 1 + G A rs545344016 74460003 + 74459983 74460023 41 AGTCGGCGGGGCCGGCGGGGCCGCTGTGACGAGACGGCGGC AGTCGGCGAGGCCGGCGGGGCCGCTGTGACGAGACGGCGGC < 41bp 1 0.666074732610397 1 0.420274317264557 experiment 0.667850534779205 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF169 ENSG00000166439 CDS Human protein_coding chr11:74460003 chr11:74459991 synonymous SNV . 0 9 hm5C_associated_SNPs_9508 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_11911 DeepMRMD:1;iRNA_m5C:0.999536712157815 11912 chr11 75110563 75110563 1 + C G rs553767972 75110575 + 75110555 75110595 41 GCCACTTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGG GCCACTTCGTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGG < 41bp 1 0.69318392182848 1 0.783592045307159 experiment 0.61363215634304 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110575 chr11:75110563 . . 0 9 hm5C_associated_SNPs_9512 0 0 1 0 1 Cytosol 1 0.500231643921103 0.432815909385682 0.999536712157794 hm5C_site_11912 DeepMRMD:0.432815909385682;iRNA_m5C:0.999536712157794 11913 chr11 75110563 75110563 1 + C G rs553767972 75110580 + 75110560 75110600 41 TTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTG TTCGTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTG < 41bp 1 0.62628708336333 1 0.39202418923378 experiment 0.74742583327334 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110580 chr11:75110563 . . 0 4 hm5C_associated_SNPs_9513 0 0 1 0 1 Cytosol 1 0.500231643935704 1 0.999536712128593 hm5C_site_11913 DeepMRMD:1;iRNA_m5C:0.999536712128593 11914 chr11 75110575 75110575 1 + C G rs17881757 75110580 + 75110560 75110600 41 TTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTG TTCCTTTCCTTTCAGGGGAGCGCGGCGGCAAGATGGCAGTG < 41bp 1 0.648154898526769 1 0.534878313541412 experiment 0.703690202946462 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110580 chr11:75110575 . . 0 16 hm5C_associated_SNPs_9515 0 0 1 0 1 Cytosol 1 0.500231643921075 0.930243372917176 0.99953671215785 hm5C_site_11914 DeepMRMD:0.930243372917176;iRNA_m5C:0.99953671215785 11915 chr11 75110575 75110575 1 + C G rs17881757 75110585 + 75110565 75110605 41 TTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCAAAT TTCCTTTCAGGGGAGCGCGGCGGCAAGATGGCAGTGCAAAT < 41bp 1 0.660587873266479 1 0.575757265090942 experiment 0.678824253467042 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110585 chr11:75110575 . . 0 11 hm5C_associated_SNPs_9516 0 0 1 0 1 Cytosol 1 0.50023164391871 0.848485469818116 0.999536712162581 hm5C_site_11915 DeepMRMD:0.848485469818116;iRNA_m5C:0.999536712162581 11916 chr11 75110576 75110576 1 + G A rs17880657 75110575 + 75110555 75110595 41 GCCACTTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGG GCCACTTCCTTTCCTTTCAGCAGAGCGCGGCGGCAAGATGG < 41bp 1 0.632238754506999 1 0.433421462774277 experiment 0.735522490986001 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110575 chr11:75110576 . . 0 22 hm5C_associated_SNPs_9517 0 0 1 0 1 Cytosol 1 0.500231643171096 1 0.999536713657808 hm5C_site_11916 DeepMRMD:1;iRNA_m5C:0.999536713657808 11917 chr11 75110576 75110576 1 + G A rs17880657 75110580 + 75110560 75110600 41 TTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTG TTCCTTTCCTTTCAGCAGAGCGCGGCGGCAAGATGGCAGTG < 41bp 1 0.636351046871539 1 0.37890613079071 experiment 0.727297906256923 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110580 chr11:75110576 . . 0 17 hm5C_associated_SNPs_9518 0 0 1 0 1 Cytosol 1 0.500231883472878 1 0.999536233054243 hm5C_site_11917 DeepMRMD:1;iRNA_m5C:0.999536233054243 11918 chr11 75110576 75110576 1 + G A rs17880657 75110585 + 75110565 75110605 41 TTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCAAAT TTCCTTTCAGCAGAGCGCGGCGGCAAGATGGCAGTGCAAAT < 41bp 1 0.619766306848322 1 0.471077382564545 experiment 0.760467386303355 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110585 chr11:75110576 . . 0 12 hm5C_associated_SNPs_9520 0 0 1 0 1 Cytosol 1 0.500231392313326 1 0.999537215373349 hm5C_site_11918 DeepMRMD:1;iRNA_m5C:0.999537215373349 11919 chr11 75110581 75110581 1 + G C rs531798394 75110575 + 75110555 75110595 41 GCCACTTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGG GCCACTTCCTTTCCTTTCAGCGGAGCCCGGCGGCAAGATGG < 41bp 1 0.655598525459994 1 0.786227226257324 experiment 0.688802949080012 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110575 chr11:75110581 . . 0 27 hm5C_associated_SNPs_9521 0 0 1 0 1 Cytosol 1 0.500231643921092 0.427545547485352 0.999536712157815 hm5C_site_11919 DeepMRMD:0.427545547485352;iRNA_m5C:0.999536712157815 11920 chr11 75110581 75110581 1 + G C rs531798394 75110580 + 75110560 75110600 41 TTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTG TTCCTTTCCTTTCAGCGGAGCCCGGCGGCAAGATGGCAGTG < 41bp 1 0.402692531378674 1 0.149252325296402 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110580 chr11:75110581 . . 0 22 hm5C_associated_SNPs_9522 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11920 DeepMRMD:1;iRNA_m5C:0.999536712157815 11921 chr11 75110581 75110581 1 + G C rs531798394 75110585 + 75110565 75110605 41 TTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCAAAT TTCCTTTCAGCGGAGCCCGGCGGCAAGATGGCAGTGCAAAT < 41bp 1 0.653704286760129 1 0.511601984500885 experiment 0.692591426479741 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110585 chr11:75110581 . . 0 17 hm5C_associated_SNPs_9523 0 0 1 0 1 Cytosol 1 0.500231643921088 0.97679603099823 0.999536712157824 hm5C_site_11921 DeepMRMD:0.97679603099823;iRNA_m5C:0.999536712157824 11922 chr11 75110589 75110589 1 + A C rs3133187 75110580 + 75110560 75110600 41 TTCCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTG TTCCTTTCCTTTCAGCGGAGCGCGGCGGCCAGATGGCAGTG < 41bp 1 0.622164444431185 1 0.307306885719299 experiment 0.75567111113763 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110580 chr11:75110589 . . 0 30 hm5C_associated_SNPs_9525 0 0 1 0 1 Cytosol 1 0.500231643885452 1 0.999536712229097 hm5C_site_11922 DeepMRMD:1;iRNA_m5C:0.999536712229097 11923 chr11 75110589 75110589 1 + A C rs3133187 75110585 + 75110565 75110605 41 TTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCAAAT TTCCTTTCAGCGGAGCGCGGCGGCCAGATGGCAGTGCAAAT < 41bp 1 0.416999747369978 1 0.38908064365387 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 UTR5 Human protein_coding chr11:75110585 chr11:75110589 . . 0 25 hm5C_associated_SNPs_9526 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_11923 DeepMRMD:1;iRNA_m5C:0.999536712157815 11924 chr11 75111523 75111523 1 + T G rs371639267 75111518 + 75111498 75111538 41 CTGTGCTGCGTTCTGTGGCACAGTTTAAAGAGCCCTGGTTG CTGTGCTGCGTTCTGTGGCACAGTTGAAAGAGCCCTGGTTG < 41bp 1 0.147895139382568 1 0.403024792671204 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD15A ENSG00000206941 ncRNA_exonic Human snoRNA chr11:75111518 chr11:75111523 . . 0 26 hm5C_associated_SNPs_9527 0 0 1 0 0 unknown 1 0.500231627160044 1 0.999536745679913 hm5C_site_11924 DeepMRMD:1;iRNA_m5C:0.999536745679913 11925 chr11 75279846 75279846 1 + C T rs649257 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATACTGTGGGTGTCATGATGATGCACCGGACAGG < 41bp 1 0.528274833422174 1 0.152158051729202 experiment 0.943450333155652 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279846 synonymous SNV . 0 12 hm5C_associated_SNPs_9528 1 0 1 0 2 Ribosome 1 0.500288079855349 1 0.999423840289301 hm5C_site_11925 DeepMRMD:1;iRNA_m5C:0.999423840289301 Osteogenesis Imperfecta, Recessive Osteogenesis Imperfecta, Recessive 11926 chr11 75280006 75280006 1 + C T rs61733248 75279988 + 75279968 75280008 41 TCCGCTCCTCTCCCAGGCCTCTACAACTACTACGACGACGA TCCGCTCCTCTCCCAGGCCTCTACAACTACTACGACGATGA < 41bp 1 0.513441168520637 1 0.768744230270386 experiment 0.973117662958725 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279988 chr11:75280006 synonymous SNV . 0 39 hm5C_associated_SNPs_9529 2 0 1 0 1 Ribosome 1 0.500231643921093 0.462511539459228 0.999536712157815 hm5C_site_11926 DeepMRMD:0.462511539459228;iRNA_m5C:0.999536712157815 not specified not specified 11927 chr11 75283482 75283482 1 + G A rs541972599 75283485 + 75283465 75283505 41 CCAAATTGAGCTAGGGGGGTCAGCCAGCCCTCTTCTGACAC CCAAATTGAGCTAGGGGAGTCAGCCAGCCCTCTTCTGACAC < 41bp 1 0.570077386241003 1 0.320429146289825 experiment 0.859845227517994 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SERPINH1 ENSG00000149257 UTR3 Human protein_coding chr11:75283485 chr11:75283482 . . 0 18 hm5C_associated_SNPs_9530 0 0 1 0 0 Ribosome 1 0.500231645517764 1 0.999536708964472 hm5C_site_11927 DeepMRMD:1;iRNA_m5C:0.999536708964472 11928 chr11 75283684 75283684 1 + G A rs180685772 75283698 + 75283678 75283718 41 TCTGGCGTTGTGGGGATGAACTTTTTGTTTTGTTTCTTCCT TCTGGCATTGTGGGGATGAACTTTTTGTTTTGTTTCTTCCT < 41bp 1 0.16366084347016 1 0.0617407560348511 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERPINH1 ENSG00000149257 UTR3 Human protein_coding chr11:75283698 chr11:75283684 . . 0 7 hm5C_associated_SNPs_9531 1 0 1 0 0 Ribosome 1 0.500231538731315 1 0.99953692253737 hm5C_site_11928 DeepMRMD:1;iRNA_m5C:0.99953692253737 Osteogenesis Imperfecta, Recessive Osteogenesis Imperfecta, Recessive 11929 chr11 75283708 75283708 1 + T G rs145619367 75283698 + 75283678 75283718 41 TCTGGCGTTGTGGGGATGAACTTTTTGTTTTGTTTCTTCCT TCTGGCGTTGTGGGGATGAACTTTTTGTTTGGTTTCTTCCT < 41bp 1 0.170439155019704 1 0.0708599984645844 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERPINH1 ENSG00000149257 UTR3 Human protein_coding chr11:75283698 chr11:75283708 . . 0 31 hm5C_associated_SNPs_9532 1 0 1 0 0 Ribosome 1 0.50023165081277 1 0.99953669837446 hm5C_site_11929 DeepMRMD:1;iRNA_m5C:0.99953669837446 Osteogenesis Imperfecta, Recessive Osteogenesis Imperfecta, Recessive 11930 chr11 76114926 76114926 1 + C T rs80035019 76114912 + 76114892 76114932 41 GGGCAGGAGAAGATGGATGTCACAGCTCAAGAAGCGAGAAC GGGCAGGAGAAGATGGATGTCACAGCTCAAGAAGTGAGAAC < 41bp 1 0.524115512009219 1 0.33093449473381 experiment 0.951768975981561 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOC100506127 ENSG00000179240 CDS Human protein_coding chr11:76114912 chr11:76114926 nonsynonymous SNV 0.005 0 35 hm5C_associated_SNPs_9533 0 0 0 0 1 unknown 1 0.500231643921088 1 0.999536712157824 hm5C_site_11930 DeepMRMD:1;iRNA_m5C:0.999536712157824 11931 chr11 76507819 76507819 1 + C T rs113882774 76507827 + 76507807 76507847 41 ACCAGTGGGGAGCCCGCAGGCCTATGTGGCAGCGTCACCAC ACCAGTGGGGAGTCCGCAGGCCTATGTGGCAGCGTCACCAC < 41bp 1 0.254565651193057 1 0.200976610183716 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSKU ENSG00000182704 UTR3 Human protein_coding chr11:76507827 chr11:76507819 . . 0 13 hm5C_associated_SNPs_9534 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643637726 1 0.999536712724548 hm5C_site_11931 DeepMRMD:1;iRNA_m5C:0.999536712724548 11932 chr11 76507819 76507819 1 + C T rs113882774 76507828 + 76507808 76507848 41 CCAGTGGGGAGCCCGCAGGCCTATGTGGCAGCGTCACCACA CCAGTGGGGAGTCCGCAGGCCTATGTGGCAGCGTCACCACA < 41bp 1 0.254675852585655 1 0.0873838365077972 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSKU ENSG00000182704 UTR3 Human protein_coding chr11:76507828 chr11:76507819 . . 0 12 hm5C_associated_SNPs_9535 0 0 0 0 0 Endoplasmic reticulum 1 0.500231642501433 1 0.999536714997134 hm5C_site_11932 DeepMRMD:1;iRNA_m5C:0.999536714997134 11933 chr11 76507826 76507826 1 + G A rs77538391 76507827 + 76507807 76507847 41 ACCAGTGGGGAGCCCGCAGGCCTATGTGGCAGCGTCACCAC ACCAGTGGGGAGCCCGCAGACCTATGTGGCAGCGTCACCAC < 41bp 1 0.280194437937663 1 0.150061964988708 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSKU ENSG00000182704 UTR3 Human protein_coding chr11:76507827 chr11:76507826 . . 0 20 hm5C_associated_SNPs_9536 0 0 0 0 0 Endoplasmic reticulum 1 0.500231633573223 1 0.999536732853554 hm5C_site_11933 DeepMRMD:1;iRNA_m5C:0.999536732853554 11934 chr11 76507826 76507826 1 + G A rs77538391 76507828 + 76507808 76507848 41 CCAGTGGGGAGCCCGCAGGCCTATGTGGCAGCGTCACCACA CCAGTGGGGAGCCCGCAGACCTATGTGGCAGCGTCACCACA < 41bp 1 0.358286862485543 1 0.133280009031296 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSKU ENSG00000182704 UTR3 Human protein_coding chr11:76507828 chr11:76507826 . . 0 19 hm5C_associated_SNPs_9537 0 0 0 0 0 Endoplasmic reticulum 1 0.50023157566205 1 0.9995368486759 hm5C_site_11934 DeepMRMD:1;iRNA_m5C:0.9995368486759 11935 chr11 76572065 76572065 1 + C G rs138662843 76572057 + 76572037 76572077 41 ACCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGAC ACCGAGAGGGCTACTGGGGCCCCACGACGTCCACGCTGGAC < 41bp 1 0.300622497574711 1 0.159083187580109 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572057 chr11:76572065 synonymous SNV . 0 29 hm5C_associated_SNPs_9538 0 0 1 0 2 Endoplasmic reticulum 1 0.500232347327253 1 0.999535305345493 hm5C_site_11935 DeepMRMD:1;iRNA_m5C:0.999535305345493 11936 chr11 76572065 76572065 1 + C G rs138662843 76572058 + 76572038 76572078 41 CCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGACT CCGAGAGGGCTACTGGGGCCCCACGACGTCCACGCTGGACT < 41bp 1 0.404466287076375 1 0.116502076387405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572058 chr11:76572065 synonymous SNV . 0 28 hm5C_associated_SNPs_9539 0 0 1 0 2 Endoplasmic reticulum 1 0.500117348359346 1 0.999765303281308 hm5C_site_11936 DeepMRMD:1;iRNA_m5C:0.999765303281308 11937 chr11 77300812 77300812 1 + C T rs545031882 77300825 + 77300805 77300845 41 CCCCGCGCCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGC CCCCGCGTCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGC < 41bp 1 0.494399594270909 1 0.129457205533981 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AQP11 ENSG00000178301 UTR5 Human protein_coding chr11:77300825 chr11:77300812 . . 0 8 hm5C_associated_SNPs_9540 0 0 0 0 1 Ribosome 1 0.500231643993436 1 0.999536712013128 hm5C_site_11937 DeepMRMD:1;iRNA_m5C:0.999536712013128 11938 chr11 77300812 77300812 1 + C T rs545031882 77300826 + 77300806 77300846 41 CCCGCGCCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCT CCCGCGTCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCT < 41bp 1 0.646112629155874 1 0.211796224117279 experiment 0.707774741688251 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AQP11 ENSG00000178301 UTR5 Human protein_coding chr11:77300826 chr11:77300812 . . 0 7 hm5C_associated_SNPs_9541 0 0 0 0 1 Ribosome 1 0.490519993158975 1 1 hm5C_site_11938 DeepMRMD:1;iRNA_m5C:1 11939 chr11 77300812 77300812 1 + C T rs545031882 77300828 + 77300808 77300848 41 CGCGCCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCT CGCGTCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCT < 41bp 1 0.0487173648407434 1 0.196919828653336 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AQP11 ENSG00000178301 UTR5 Human protein_coding chr11:77300828 chr11:77300812 . . 0 5 hm5C_associated_SNPs_9542 0 0 0 0 1 Ribosome 1 0.500231643919698 1 0.999536712160605 hm5C_site_11939 DeepMRMD:1;iRNA_m5C:0.999536712160605 11940 chr11 77300812 77300812 1 + C T rs545031882 77300829 + 77300809 77300849 41 GCGCCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCTG GCGTCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCTG < 41bp 1 0.301051071922614 1 0.286146283149719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AQP11 ENSG00000178301 UTR5 Human protein_coding chr11:77300829 chr11:77300812 . . 0 4 hm5C_associated_SNPs_9543 0 0 0 0 1 Ribosome 1 0.500231671782378 1 0.999536656435243 hm5C_site_11940 DeepMRMD:1;iRNA_m5C:0.999536656435243 11941 chr11 77300812 77300812 1 + C T rs545031882 77300831 + 77300811 77300851 41 GCCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCTGGT GTCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCTGGT < 41bp 1 0.287706212764292 1 0.0975756347179413 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AQP11 ENSG00000178301 UTR5 Human protein_coding chr11:77300831 chr11:77300812 . . 0 2 hm5C_associated_SNPs_9544 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_11941 DeepMRMD:1;iRNA_m5C:0.999536712157814 11942 chr11 77300812 77300812 1 + C T rs545031882 77300832 + 77300812 77300852 41 CCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCTGGTT TCTCCCCGCCTCCCCGCCTCCCCGCCTCCTCGGCTCTGGTT < 41bp 1 0.438522303013279 1 0.180899083614349 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AQP11 ENSG00000178301 UTR5 Human protein_coding chr11:77300832 chr11:77300812 . . 0 1 hm5C_associated_SNPs_9545 0 0 0 0 1 Ribosome 1 0.500231643921625 1 0.999536712156751 hm5C_site_11942 DeepMRMD:1;iRNA_m5C:0.999536712156751 11943 chr11 77301385 77301385 1 + G A rs145642525 77301390 + 77301370 77301410 41 CATGTCCCCCGAGACGGGTGCGGTGAGGCTATTGGCTCAGC CATGTCCCCCGAGACAGGTGCGGTGAGGCTATTGGCTCAGC < 41bp 1 0.514330236250941 1 0.442007303237915 experiment 0.971339527498118 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AQP11 ENSG00000178301 CDS Human protein_coding chr11:77301390 chr11:77301385 synonymous SNV . 0 16 hm5C_associated_SNPs_9546 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_11943 DeepMRMD:1;iRNA_m5C:0.999536712157815 11944 chr11 85339638 85339638 1 + C T rs577525231 85339644 + 85339624 85339664 41 CCACCGGCAAGTCACATGAGCCACCAAAATGGTGGTGTTCG CCACCGGCAAGTCATATGAGCCACCAAAATGGTGGTGTTCG < 41bp 1 0.136662230211626 1 0.0406516790390015 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM126B ENSG00000171204 UTR5 Human protein_coding chr11:85339644 chr11:85339638 . . 0 15 hm5C_associated_SNPs_9547 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157813 hm5C_site_11944 DeepMRMD:1;iRNA_m5C:0.999536712157813 11945 chr11 86663296 86663296 1 + G A rs61735303 86663294 - 86663274 86663314 41 CCAGGTGATGAAGAGGTGCCCTTACCTCACAAAACCCCCAT CCAGGTGATGAAGAGGTGTCCTTACCTCACAAAACCCCCAT < 41bp 1 0.167942186188412 1 0.0463884174823761 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZD4 ENSG00000174804 CDS Human protein_coding chr11:86663294 chr11:86663296 nonsynonymous SNV 0.991 1 19 hm5C_associated_SNPs_9549 2 0 1 0 0 Ribosome 1 0.500231643987236 1 0.999536712025528 hm5C_site_11945 DeepMRMD:1;iRNA_m5C:0.999536712025528 Familial exudative vitreoretinopathy Familial exudative vitreoretinopathy 11946 chr11 86663296 86663296 1 + G A rs61735303 86663313 - 86663293 86663333 41 CCACATGTGCATGGAAGGGCCAGGTGATGAAGAGGTGCCCT CCACATGTGCATGGAAGGGCCAGGTGATGAAGAGGTGTCCT < 41bp 1 0.695523486652451 1 0.684495508670807 experiment 0.608953026695098 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FZD4 ENSG00000174804 CDS Human protein_coding chr11:86663313 chr11:86663296 nonsynonymous SNV 0.991 1 38 hm5C_associated_SNPs_9550 2 0 1 0 0 Ribosome 1 0.500231632807456 0.631008982658386 0.999536734385089 hm5C_site_11946 DeepMRMD:0.631008982658386;iRNA_m5C:0.999536734385089 Familial exudative vitreoretinopathy Familial exudative vitreoretinopathy 11947 chr11 93412665 93412665 1 + G C rs150862789 93412674 + 93412654 93412694 41 TGGAACGGTTTGAAAAGGCACATGTACGGGGATTCCAAGCA TGGAACGGTTTCAAAAGGCACATGTACGGGGATTCCAAGCA < 41bp 1 0.179139910175671 1 0.0899163484573364 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP295 ENSG00000166004 CDS Human protein_coding chr11:93412674 chr11:93412665 nonsynonymous SNV 0.996 4 12 hm5C_associated_SNPs_9551 0 0 1 0 2 Nucleus 1 0.500231715657403 1 0.999536568685194 hm5C_site_11947 DeepMRMD:1;iRNA_m5C:0.999536568685194 11948 chr11 93421014 93421014 1 + C T rs60226346 93421028 + 93421008 93421048 41 CGTTATCCTCTGGGCAGGAACAAGGTATTTCTCTCCAAGAG CGTTATTCTCTGGGCAGGAACAAGGTATTTCTCTCCAAGAG < 41bp 1 0.630204614628552 1 0.800123810768127 experiment 0.739590770742896 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP295 ENSG00000166004 CDS Human protein_coding chr11:93421028 chr11:93421014 nonsynonymous SNV 0.255 2 7 hm5C_associated_SNPs_9552 0 0 1 0 1 Nucleus 1 0.500231643920844 0.399752378463746 0.999536712158312 hm5C_site_11948 DeepMRMD:0.399752378463746;iRNA_m5C:0.999536712158312 11949 chr11 93494811 93494811 1 + G A rs148498341 93494810 + 93494790 93494830 41 TACCTGCAGAGTTTCTCTATCGCATTGATCAACCAAAAGAG TACCTGCAGAGTTTCTCTATCACATTGATCAACCAAAAGAG < 41bp 1 0.484369188312622 1 0.0610970258712769 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93494810 chr11:93494811 nonsynonymous SNV 0.944 4 22 hm5C_associated_SNPs_9553 0 0 0 0 0 Cytosol 1 0.500233747473172 1 0.999532505053655 hm5C_site_11949 DeepMRMD:1;iRNA_m5C:0.999532505053655 11950 chr11 93912987 93912987 1 + C T rs74832612 93912995 + 93912975 93913015 41 GATCCTGAGAAACGACAGCACCGTGCCCGATCAGTTTCAGT GATCCTGAGAAATGACAGCACCGTGCCCGATCAGTTTCAGT < 41bp 1 0.157114980631078 1 0.18289840221405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PANX1 ENSG00000110218 CDS Human protein_coding chr11:93912995 chr11:93912987 synonymous SNV . 0 13 hm5C_associated_SNPs_9554 0 0 0 0 0 Endoplasmic reticulum 1 0.500231642234085 1 0.999536715531831 hm5C_site_11950 DeepMRMD:1;iRNA_m5C:0.999536715531831 11951 chr11 94532777 94532777 1 + A G rs200856535 94532760 + 94532740 94532780 41 TGCAGGACCAGCCCATCCTACAAACAACTTTTCTTCCACGG TGCAGGACCAGCCCATCCTACAAACAACTTTTCTTCCGCGG < 41bp 1 0.164472016675187 1 0.410263746976852 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94532760 chr11:94532777 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_9555 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_11951 DeepMRMD:1;iRNA_m5C:0.999536712157815 11952 chr11 94533475 94533475 1 + G A rs373004473 94533474 + 94533454 94533494 41 ACCCCCTGAGTATGGGGTAACGAGGTGATTATCAACTGCAG ACCCCCTGAGTATGGGGTAACAAGGTGATTATCAACTGCAG < 41bp 1 0.619314839050238 1 0.667797088623047 experiment 0.761370321899524 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94533474 chr11:94533475 synonymous SNV . 0 22 hm5C_associated_SNPs_9556 0 0 1 0 1 chromatin 1 0.500231643934941 0.664405822753906 0.999536712130118 hm5C_site_11952 DeepMRMD:0.664405822753906;iRNA_m5C:0.999536712130118 11953 chr11 94609618 94609618 1 + A G rs527321102 94609610 + 94609590 94609630 41 TCTTCCCAGCAGACTGGTATCTGGCTGTAACGTTTGACGTC TCTTCCCAGCAGACTGGTATCTGGCTGTGACGTTTGACGTC < 41bp 1 0.629124890118264 1 0.447027325630188 experiment 0.741750219763471 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMOTL1 ENSG00000256469 ncRNA_intronic Human antisense chr11:94609610 chr11:94609618 . . 0 29 hm5C_associated_SNPs_9557 0 0 1 0 0 chromatin 1 0.500208320702743 1 0.999583358594514 hm5C_site_11953 DeepMRMD:1;iRNA_m5C:0.999583358594514 11954 chr11 94865068 94865068 1 + G T rs533669 94865048 + 94865028 94865068 41 GTCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAAG GTCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAAT < 41bp 1 0.252245039137714 1 0.146006435155869 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ENDOD1 ENSG00000149218 UTR3 Human protein_coding chr11:94865048 chr11:94865068 . . 0 41 hm5C_associated_SNPs_9558 0 0 1 3 0 Ribosome 1 0.500231643920981 1 0.999536712158039 hm5C_site_11954 DeepMRMD:1;iRNA_m5C:0.999536712158039 11955 chr11 94865068 94865068 1 + G T rs533669 94865049 + 94865029 94865069 41 TCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAAGG TCTATTTATTCTTGGGTGGCCAGTTTTGAAACCTAAAAATG < 41bp 1 0.244567614828189 1 0.233702749013901 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ENDOD1 ENSG00000149218 UTR3 Human protein_coding chr11:94865049 chr11:94865068 . . 0 40 hm5C_associated_SNPs_9559 0 0 1 3 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11955 DeepMRMD:1;iRNA_m5C:0.999536712157815 11956 chr11 95561121 95561121 1 + T A rs544014488 95561126 + 95561106 95561146 41 GTAACACCTCCCTCCTCCAACGGTATTAATGAGGAGTTGTC GTAACACCTCCCTCCACCAACGGTATTAATGAGGAGTTGTC < 41bp 1 0.644432195557484 1 0.15321871638298 experiment 0.711135608885032 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95561126 chr11:95561121 nonsynonymous SNV 0.092 1 16 hm5C_associated_SNPs_9560 0 0 1 0 1 Nucleus 1 0.500231643923591 1 0.999536712152819 hm5C_site_11956 DeepMRMD:1;iRNA_m5C:0.999536712152819 11957 chr11 96123211 96123211 1 + G C rs185050228 96123222 + 96123202 96123242 41 AGTCAGGGAGCTGTGCGGGTCCTGGTTGCAAGAGAGGTGGG AGTCAGGGACCTGTGCGGGTCCTGGTTGCAAGAGAGGTGGG < 41bp 1 0.676508943394428 1 0.151291370391846 experiment 0.646982113211144 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control JRKL ENSG00000183340 UTR5 Human protein_coding chr11:96123222 chr11:96123211 . . 0 10 hm5C_associated_SNPs_9561 0 0 1 0 1 Cytosol 1 0.50023164392108 1 0.999536712157839 hm5C_site_11957 DeepMRMD:1;iRNA_m5C:0.999536712157839 11958 chr11 107917087 107917087 1 + A G rs7117111 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAGGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.37547778058855 1 0.351598083972931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917087 synonymous SNV . 0 17 hm5C_associated_SNPs_9563 0 0 1 1 2 Ribosome 1 0.500231644263104 1 0.999536711473792 hm5C_site_11958 DeepMRMD:1;iRNA_m5C:0.999536711473792 11959 chr11 107968470 107968470 1 + G T rs186168658 107968473 + 107968453 107968493 41 TTCTCAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA TTCTCAGTGAACCAGGATTTCAGTTTAATGTAAGCTCGTTA < 41bp 1 0.346106285558335 1 0.179953306913376 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968473 chr11:107968470 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_9564 0 0 1 0 1 Ribosome 1 0.500231643983577 1 0.999536712032846 hm5C_site_11959 DeepMRMD:1;iRNA_m5C:0.999536712032846 11960 chr11 107975265 107975265 1 + A G rs7112974 107975249 + 107975229 107975269 41 TCTGCCTTACCTTACAAAAACAACTATATTTTGCCAATCAC TCTGCCTTACCTTACAAAAACAACTATATTTTGCCAGTCAC < 41bp 1 0.293210344605605 1 0.338236212730408 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUL5 ENSG00000166266 UTR3 Human protein_coding chr11:107975249 chr11:107975265 . . 0 37 hm5C_associated_SNPs_9565 0 0 1 1 0 Ribosome 1 0.50023164391717 1 0.999536712165661 hm5C_site_11960 DeepMRMD:1;iRNA_m5C:0.999536712165661 11961 chr11 107976579 107976579 1 + G C rs188854772 107976573 + 107976553 107976593 41 AGATAGTAGGAAATGGAGTACAGAAAGGCATACAGTATTAT AGATAGTAGGAAATGGAGTACAGAAACGCATACAGTATTAT < 41bp 1 0.582580200896768 1 0.442966312170029 experiment 0.834839598206464 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CUL5 ENSG00000255467 ncRNA_intronic Human antisense chr11:107976573 chr11:107976579 . . 0 27 hm5C_associated_SNPs_9566 0 0 1 3 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11961 DeepMRMD:1;iRNA_m5C:0.999536712157815 11962 chr11 108196134 108196134 1 + A G rs545873723 108196145 + 108196125 108196165 41 GAGCCTATCATGGCTCTACGCACAGTCATTTTGGAGATCCT GAGCCTATCGTGGCTCTACGCACAGTCATTTTGGAGATCCT < 41bp 1 0.326226320134275 1 0.121269881725311 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108196145 chr11:108196134 nonsynonymous SNV 0.999 2 10 hm5C_associated_SNPs_9567 1 0 1 0 1 Nucleus 1 0.500229002246142 1 0.999541995507716 hm5C_site_11962 DeepMRMD:1;iRNA_m5C:0.999541995507716 Hereditary cancer-predisposing syndrome Hereditary cancer-predisposing syndrome 11963 chr11 108236471 108236471 1 + C T rs3092834 108236480 + 108236460 108236500 41 GCTGGGCGCAGCGGCTCACGCCTGTAATCCCAGCACTTTGG GCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGG < 41bp 1 0.227247070973986 1 0.0828303694725037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108236480 chr11:108236471 . . 0 12 hm5C_associated_SNPs_9568 1 0 0 0 0 Nucleus 1 0.5002312365285 1 0.999537526943001 hm5C_site_11963 DeepMRMD:1;iRNA_m5C:0.999537526943001 Ataxia-telangiectasia syndrome Ataxia-telangiectasia syndrome 11964 chr11 108236471 108236471 1 + C T rs3092834 108236481 + 108236461 108236501 41 CTGGGCGCAGCGGCTCACGCCTGTAATCCCAGCACTTTGGG CTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGG < 41bp 1 0.41601536908867 1 0.273410260677338 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108236481 chr11:108236471 . . 0 11 hm5C_associated_SNPs_9569 1 0 0 0 0 Nucleus 1 0.500231643877668 1 0.999536712244664 hm5C_site_11964 DeepMRMD:1;iRNA_m5C:0.999536712244664 Ataxia-telangiectasia syndrome Ataxia-telangiectasia syndrome 11965 chr11 108236471 108236471 1 + C T rs3092834 108236488 + 108236468 108236508 41 CAGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA CAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA < 41bp 1 0.271895318595595 1 0.191685646772385 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108236488 chr11:108236471 . . 0 4 hm5C_associated_SNPs_9570 1 0 0 0 0 Nucleus 1 0.500231643949112 1 0.999536712101777 hm5C_site_11965 DeepMRMD:1;iRNA_m5C:0.999536712101777 Ataxia-telangiectasia syndrome Ataxia-telangiectasia syndrome 11966 chr11 108236471 108236471 1 + C T rs3092834 108236489 + 108236469 108236509 41 AGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG AGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG < 41bp 1 0.187675474467451 1 0.198829352855682 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108236489 chr11:108236471 . . 0 3 hm5C_associated_SNPs_9571 1 0 0 0 0 Nucleus 1 0.500231667481095 1 0.999536665037809 hm5C_site_11966 DeepMRMD:1;iRNA_m5C:0.999536665037809 Ataxia-telangiectasia syndrome Ataxia-telangiectasia syndrome 11967 chr11 108236507 108236507 1 + G A rs190023130 108236488 + 108236468 108236508 41 CAGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA CAGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAA < 41bp 1 0.30018208979828 1 0.235311448574066 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108236488 chr11:108236507 . . 0 40 hm5C_associated_SNPs_9573 0 0 0 0 0 Nucleus 1 0.500231643877692 1 0.999536712244617 hm5C_site_11967 DeepMRMD:1;iRNA_m5C:0.999536712244617 11968 chr11 108236507 108236507 1 + G A rs190023130 108236489 + 108236469 108236509 41 AGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG AGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAG < 41bp 1 0.15561497792578 1 0.170473217964172 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108236489 chr11:108236507 . . 0 39 hm5C_associated_SNPs_9574 0 0 0 0 0 Nucleus 1 0.500231644606113 1 0.999536710787773 hm5C_site_11968 DeepMRMD:1;iRNA_m5C:0.999536710787773 11969 chr11 108236507 108236507 1 + G A rs190023130 108236493 + 108236473 108236513 41 GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGA GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGA < 41bp 1 0.158358605277484 1 0.104109138250351 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108236493 chr11:108236507 . . 0 35 hm5C_associated_SNPs_9576 0 0 0 0 0 Nucleus 1 0.500231643921849 1 0.999536712156303 hm5C_site_11969 DeepMRMD:1;iRNA_m5C:0.999536712156303 11970 chr11 108236507 108236507 1 + G A rs190023130 108236495 + 108236475 108236515 41 TCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGAGC TCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGAGC < 41bp 1 0.166979282112734 1 0.163788557052612 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108236495 chr11:108236507 . . 0 33 hm5C_associated_SNPs_9577 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_11970 DeepMRMD:1;iRNA_m5C:0.999536712157814 11971 chr11 108236507 108236507 1 + G A rs190023130 108236505 + 108236485 108236525 41 AATCCCAGCACTTTGGGAGGCCGAGGTGAGCGGATCACAAG AATCCCAGCACTTTGGGAGGCCAAGGTGAGCGGATCACAAG < 41bp 1 0.509656039859201 1 0.759521842002869 experiment 0.980687920281597 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108236505 chr11:108236507 . . 0 23 hm5C_associated_SNPs_9578 0 0 0 0 0 Nucleus 1 0.500231643921092 0.480956315994262 0.999536712157815 hm5C_site_11971 DeepMRMD:0.480956315994262;iRNA_m5C:0.999536712157815 11972 chr11 108236507 108236507 1 + G A rs190023130 108236506 + 108236486 108236526 41 ATCCCAGCACTTTGGGAGGCCGAGGTGAGCGGATCACAAGG ATCCCAGCACTTTGGGAGGCCAAGGTGAGCGGATCACAAGG < 41bp 1 0.681351899764011 1 0.827260136604309 experiment 0.637296200471978 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108236506 chr11:108236507 . . 0 22 hm5C_associated_SNPs_9579 0 0 0 0 0 Nucleus 1 0.500231644017599 0.345479726791382 0.999536711964802 hm5C_site_11972 DeepMRMD:0.345479726791382;iRNA_m5C:0.999536711964802 11973 chr11 108237839 108237839 1 + C T rs227091 108237825 + 108237805 108237845 41 CCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAG CCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAG < 41bp 1 0.437629648769449 1 0.115028411149979 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATM ENSG00000149311 UTR3 Human protein_coding chr11:108237825 chr11:108237839 . . 0 35 hm5C_associated_SNPs_9580 1 0 0 0 0 Nucleus 1 0.500231643795648 1 0.999536712408705 hm5C_site_11973 DeepMRMD:1;iRNA_m5C:0.999536712408705 Ataxia-telangiectasia syndrome Ataxia-telangiectasia syndrome 11974 chr11 108237839 108237839 1 + C T rs227091 108237828 + 108237808 108237848 41 GGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTG < 41bp 1 0.199137830371492 1 0.0494141280651093 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108237828 chr11:108237839 . . 0 32 hm5C_associated_SNPs_9581 1 0 0 0 0 Nucleus 1 0.50023164392109 1 0.999536712157821 hm5C_site_11974 DeepMRMD:1;iRNA_m5C:0.999536712157821 Ataxia-telangiectasia syndrome Ataxia-telangiectasia syndrome 11975 chr11 108237839 108237839 1 + C T rs227091 108237829 + 108237809 108237849 41 GGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGG GGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGG < 41bp 1 0.405009962721248 1 0.177920490503311 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108237829 chr11:108237839 . . 0 31 hm5C_associated_SNPs_9582 1 0 0 0 0 Nucleus 1 0.500231645569345 1 0.99953670886131 hm5C_site_11975 DeepMRMD:1;iRNA_m5C:0.99953670886131 Ataxia-telangiectasia syndrome Blood pressure (smoking interaction) Ataxia-telangiectasia syndrome 11976 chr11 108237839 108237839 1 + C T rs227091 108237831 + 108237811 108237851 41 TTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGA TTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGA < 41bp 1 0.346662342536544 1 0.53820526599884 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108237831 chr11:108237839 . . 0 29 hm5C_associated_SNPs_9583 1 0 0 0 0 Nucleus 1 0.500231643919158 0.92358946800232 0.999536712161685 hm5C_site_11976 DeepMRMD:0.92358946800232;iRNA_m5C:0.999536712161685 Ataxia-telangiectasia syndrome Ataxia-telangiectasia syndrome 11977 chr11 108237839 108237839 1 + C T rs227091 108237834 + 108237814 108237854 41 AAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTA AAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTA < 41bp 1 0.0759708416798558 1 0.224173694849014 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108237834 chr11:108237839 . . 0 26 hm5C_associated_SNPs_9584 1 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11977 DeepMRMD:1;iRNA_m5C:0.999536712157815 Ataxia-telangiectasia syndrome Ataxia-telangiectasia syndrome 11978 chr11 108237839 108237839 1 + C T rs227091 108237835 + 108237815 108237855 41 AGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTAC AGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAC < 41bp 1 0.307372816184576 1 0.758445739746094 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108237835 chr11:108237839 . . 0 25 hm5C_associated_SNPs_9585 1 0 0 0 0 Nucleus 1 0.500231650743337 0.483108520507812 0.999536698513327 hm5C_site_11978 DeepMRMD:0.483108520507812;iRNA_m5C:0.999536698513327 Ataxia-telangiectasia syndrome Ataxia-telangiectasia syndrome 11979 chr11 108237839 108237839 1 + C T rs227091 108237837 + 108237817 108237857 41 CAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAG CAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAG < 41bp 1 0.296255301372639 1 0.250545382499695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108237837 chr11:108237839 . . 0 23 hm5C_associated_SNPs_9586 1 0 0 0 0 Nucleus 1 0.500229342799823 1 0.999541314400354 hm5C_site_11979 DeepMRMD:1;iRNA_m5C:0.999541314400354 Ataxia-telangiectasia syndrome Ataxia-telangiectasia syndrome 11980 chr11 108237839 108237839 1 + C T rs227091 108237838 + 108237818 108237858 41 AATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGG AATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGG < 41bp 1 0.366146342101354 1 0.357229828834534 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ATM ENSG00000149311 UTR3 Human protein_coding chr11:108237838 chr11:108237839 . . 0 22 hm5C_associated_SNPs_9587 1 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_11980 DeepMRMD:1;iRNA_m5C:0.999536712157815 Ataxia-telangiectasia syndrome Ataxia-telangiectasia syndrome 11981 chr11 111599434 111599434 1 + C T rs145979214 111599417 + 111599397 111599437 41 AATCCCAACACTTTGGGAGGCCAAGGCAGGCGGATCACGAG AATCCCAACACTTTGGGAGGCCAAGGCAGGCGGATCATGAG < 41bp 1 0.301523369166402 1 0.708800852298737 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP2R1B ENSG00000170145 UTR3 Human protein_coding chr11:111599417 chr11:111599434 . . 0 38 hm5C_associated_SNPs_9590 0 0 0 0 0 Nucleus 1 0.500231643921092 0.582398295402526 0.999536712157815 hm5C_site_11981 DeepMRMD:0.582398295402526;iRNA_m5C:0.999536712157815 11982 chr11 111599597 111599597 1 + A C rs57734892 111599606 + 111599586 111599626 41 TGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGC TGCAGTGAGCCCAGATCGTGCCACTGCACTCCAGCCTGGGC < 41bp 1 0.0901205222977973 1 0.117616683244705 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP2R1B ENSG00000170145 UTR3 Human protein_coding chr11:111599606 chr11:111599597 . . 0 12 hm5C_associated_SNPs_9591 0 0 0 0 0 Nucleus 1 0.500228121708252 1 0.999543756583495 hm5C_site_11982 DeepMRMD:1;iRNA_m5C:0.999543756583495 11983 chr11 111600434 111600434 1 + T C rs143685795 111600420 + 111600400 111600440 41 GCCCCCATTTTGGTCAAGCACAGGGTGAATGTGATATTGTT GCCCCCATTTTGGTCAAGCACAGGGTGAATGTGACATTGTT < 41bp 1 0.606503951157502 1 0.549300193786621 experiment 0.786992097684995 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP2R1B ENSG00000170145 UTR3 Human protein_coding chr11:111600420 chr11:111600434 . . 0 35 hm5C_associated_SNPs_9592 0 0 1 0 0 Nucleus 1 0.500231643913496 0.901399612426758 0.999536712173008 hm5C_site_11983 DeepMRMD:0.901399612426758;iRNA_m5C:0.999536712173008 11984 chr11 113078035 113078035 1 + C T rs17115154 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG GCAGAATATTGTGAATGCCACCGCCAACCTTGGCCAGTCCG < 41bp 1 0.092468242135867 1 0.13249459862709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078035 synonymous SNV . 0 31 hm5C_associated_SNPs_9593 0 0 0 0 2 Ribosome 1 0.500231800000183 1 0.999536399999634 hm5C_site_11984 DeepMRMD:1;iRNA_m5C:0.999536399999634 11985 chr11 117039797 117039797 1 + G A rs1060211 117039792 + 117039772 117039812 41 GCTGGGATTACAGGCATGAGCCACCGTGCCTGGCCTTATTG GCTGGGATTACAGGCATGAGCCACCATGCCTGGCCTTATTG < 41bp 1 0.352378097641262 1 0.0296897292137146 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PAFAH1B2 ENSG00000168092 UTR3 Human protein_coding chr11:117039792 chr11:117039797 . . 0 26 hm5C_associated_SNPs_9594 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_11985 DeepMRMD:1;iRNA_m5C:0.999536712157815 11986 chr11 117070309 117070309 1 + C G rs367796616 117070298 + 117070278 117070318 41 TCTCAGTCAGCATGGGGGCCCAAGCTCCAGGCAGGGTGGGC TCTCAGTCAGCATGGGGGCCCAAGCTCCAGGGAGGGTGGGC < 41bp 1 0.324433705878236 1 0.169264793395996 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LOC100652768 ENSG00000149591 UTR5 Human protein_coding chr11:117070298 chr11:117070309 . . 0 32 hm5C_associated_SNPs_9595 0 0 0 0 0 unknown 1 0.500231570831931 1 0.999536858336137 hm5C_site_11986 DeepMRMD:1;iRNA_m5C:0.999536858336137 11987 chr11 117280358 117280358 1 + C T rs148424362 117280351 + 117280331 117280371 41 CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAGATCCAC CAGTCGACTCAACCCCGAGTCTCACCTTCCGCAAGATCCAC < 41bp 1 0.14416303480108 1 0.0297769904136658 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP164 ENSG00000110274 CDS Human protein_coding chr11:117280351 chr11:117280358 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_9596 0 0 0 0 1 Cytosol 1 0.500231590953458 1 0.999536818093085 hm5C_site_11987 DeepMRMD:1;iRNA_m5C:0.999536818093085 11988 chr11 118267079 118267079 1 + G A rs141017463 118267077 + 118267057 118267097 41 CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA CCCCTCACCATGGACCAGATCCAGCCAAACACAGAACTAAA < 41bp 1 0.158140810048659 1 0.242723673582077 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118267077 chr11:118267079 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_9597 0 0 1 0 1 Nucleus 1 0.500231645092077 1 0.999536709815845 hm5C_site_11988 DeepMRMD:1;iRNA_m5C:0.999536709815845 11989 chr11 118277742 118277742 1 + G C rs181465227 118277750 + 118277730 118277770 41 CTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTC CTGAGATCCCTACAGCTATTCAGAGCCTGAAAAAAATAGTC < 41bp 1 0.663109113953832 1 0.718759059906006 experiment 0.673781772092337 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATP5L ENSG00000167283 CDS Human protein_coding chr11:118277750 chr11:118277742 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_9598 0 0 1 0 2 Ribosome 1 0.500231644073141 0.562481880187988 0.999536711853718 hm5C_site_11989 DeepMRMD:0.562481880187988;iRNA_m5C:0.999536711853718 11990 chr11 118277770 118277770 1 + C T rs148370674 118277750 + 118277730 118277770 41 CTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTC CTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTT < 41bp 1 0.664082744612089 1 0.824116468429565 experiment 0.671834510775823 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATP5L ENSG00000167283 CDS Human protein_coding chr11:118277750 chr11:118277770 synonymous SNV . 0 41 hm5C_associated_SNPs_9599 0 0 1 0 1 Ribosome 1 0.500231643921929 0.35176706314087 0.999536712156143 hm5C_site_11990 DeepMRMD:0.35176706314087;iRNA_m5C:0.999536712156143 11991 chr11 118307316 118307316 1 + C G rs9332745 118307314 + 118307294 118307334 41 GGGCGCCGGGGCCTAGGGGGCGCCCCGCGGCAACGCGTCCC GGGCGCCGGGGCCTAGGGGGCGGCCCGCGGCAACGCGTCCC < 41bp 1 0.688520080032701 1 0.732783198356628 experiment 0.622959839934599 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2A ENSG00000118058 CDS Human protein_coding chr11:118307314 chr11:118307316 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_9600 2 0 1 0 0 Cytosol 1 0.500231643921092 0.534433603286744 0.999536712157815 hm5C_site_11991 DeepMRMD:0.534433603286744;iRNA_m5C:0.999536712157815 not specified not specified 11992 chr11 118307316 118307316 1 + C G rs9332745 118307317 + 118307297 118307337 41 CGCCGGGGCCTAGGGGGCGCCCCGCGGCAACGCGTCCCGGC CGCCGGGGCCTAGGGGGCGGCCCGCGGCAACGCGTCCCGGC < 41bp 1 0.413890131942082 1 0.51409900188446 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2A ENSG00000118058 CDS Human protein_coding chr11:118307317 chr11:118307316 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_9601 2 0 1 0 0 Cytosol 1 0.500231644072741 0.97180199623108 0.999536711854517 hm5C_site_11992 DeepMRMD:0.97180199623108;iRNA_m5C:0.999536711854517 not specified not specified 11993 chr11 118307385 118307385 1 + C T rs9332747 118307387 + 118307367 118307407 41 GCGGTGGCGGCCCCGGGGCGCCCCCCTCCCCCCCGGCTGTG GCGGTGGCGGCCCCGGGGTGCCCCCCTCCCCCCCGGCTGTG < 41bp 1 0.240183019994584 1 0.0824283361434937 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118307387 chr11:118307385 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_9602 1 0 1 0 0 Cytosol 1 0.500231634995051 1 0.999536730009899 hm5C_site_11993 DeepMRMD:1;iRNA_m5C:0.999536730009899 not specified not specified 11994 chr11 118307385 118307385 1 + C T rs9332747 118307388 + 118307368 118307408 41 CGGTGGCGGCCCCGGGGCGCCCCCCTCCCCCCCGGCTGTGG CGGTGGCGGCCCCGGGGTGCCCCCCTCCCCCCCGGCTGTGG < 41bp 1 0.289258141006999 1 0.34343022108078 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2A ENSG00000118058 CDS Human protein_coding chr11:118307388 chr11:118307385 nonsynonymous SNV 0.998 2 18 hm5C_associated_SNPs_9603 1 0 1 0 0 Cytosol 1 0.500219988480868 1 0.999560023038264 hm5C_site_11994 DeepMRMD:1;iRNA_m5C:0.999560023038264 not specified not specified 11995 chr11 118307385 118307385 1 + C T rs9332747 118307389 + 118307369 118307409 41 GGTGGCGGCCCCGGGGCGCCCCCCTCCCCCCCGGCTGTGGC GGTGGCGGCCCCGGGGTGCCCCCCTCCCCCCCGGCTGTGGC < 41bp 1 0.383325272392672 1 0.362301558256149 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2A ENSG00000118058 CDS Human protein_coding chr11:118307389 chr11:118307385 nonsynonymous SNV 0.998 2 17 hm5C_associated_SNPs_9604 1 0 1 0 0 Cytosol 1 0.500231643876545 1 0.999536712246909 hm5C_site_11995 DeepMRMD:1;iRNA_m5C:0.999536712246909 not specified not specified 11996 chr11 118307385 118307385 1 + C T rs9332747 118307390 + 118307370 118307410 41 GTGGCGGCCCCGGGGCGCCCCCCTCCCCCCCGGCTGTGGCG GTGGCGGCCCCGGGGTGCCCCCCTCCCCCCCGGCTGTGGCG < 41bp 1 0.0996432890799631 1 0.803765296936035 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2A ENSG00000118058 CDS Human protein_coding chr11:118307390 chr11:118307385 nonsynonymous SNV 0.998 2 16 hm5C_associated_SNPs_9605 1 0 1 0 0 Cytosol 1 0.50023135300573 0.39246940612793 0.999537293988539 hm5C_site_11996 DeepMRMD:0.39246940612793;iRNA_m5C:0.999537293988539 not specified not specified 11997 chr11 118355642 118355642 1 + A C rs9332801 118355660 + 118355640 118355680 41 ATAACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGG ATCACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGG < 41bp 1 0.015073362382366 1 0.0388703346252441 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118355660 chr11:118355642 synonymous SNV . 0 3 hm5C_associated_SNPs_9606 1 1 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_11997 DeepMRMD:1;iRNA_m5C:0.999536712157816 not specified not specified 11998 chr11 118367007 118367007 1 + G T rs565762131 118367013 + 118366993 118367033 41 GAAGACAGTCCAGAGCTGAACCCACCCCCAGGCATAGAAGA GAAGACAGTCCAGATCTGAACCCACCCCCAGGCATAGAAGA < 41bp 1 0.0241176481286186 1 0.0279262363910675 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118367013 chr11:118367007 nonsynonymous SNV 0.997 2 15 hm5C_associated_SNPs_9607 0 0 1 0 2 Cytosol 1 0.500231643852684 1 0.999536712294633 hm5C_site_11998 DeepMRMD:1;iRNA_m5C:0.999536712294633 11999 chr11 118393656 118393656 1 + C T rs9332870 118393672 + 118393652 118393692 41 CTTTCGGGTTGTAGGGGAGACTGACTGCCTGCTCAAGGACA CTTTTGGGTTGTAGGGGAGACTGACTGCCTGCTCAAGGACA < 41bp 1 0.16272385394163 1 0.0737103223800659 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LOC101929089 ENSG00000255435 ncRNA_intronic Human antisense chr11:118393672 chr11:118393656 . . 0 5 hm5C_associated_SNPs_9608 0 0 1 0 0 unknown 1 0.500231643921081 1 0.999536712157837 hm5C_site_11999 DeepMRMD:1;iRNA_m5C:0.999536712157837 12000 chr11 118393656 118393656 1 + C T rs9332870 118393676 + 118393656 118393696 41 CGGGTTGTAGGGGAGACTGACTGCCTGCTCAAGGACACTCC TGGGTTGTAGGGGAGACTGACTGCCTGCTCAAGGACACTCC < 41bp 1 0.252962360624822 1 0.259041905403137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LOC101929089 ENSG00000255435 ncRNA_intronic Human antisense chr11:118393676 chr11:118393656 . . 0 1 hm5C_associated_SNPs_9609 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12000 DeepMRMD:1;iRNA_m5C:0.999536712157815 12001 chr11 118405299 118405299 1 + G A rs143320045 118405286 + 118405266 118405306 41 AGCGTGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGA AGCGTGAGCAGTGATGAGATCTGGCTCTGAGCCAAGGGCGA < 41bp 1 0.531642542919326 1 0.345292121171951 experiment 0.936714914161348 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 UTR3 Human protein_coding chr11:118405286 chr11:118405299 . . 0 34 hm5C_associated_SNPs_9610 0 0 0 0 1 Nucleus 1 0.500231636803065 1 0.999536726393871 hm5C_site_12001 DeepMRMD:1;iRNA_m5C:0.999536726393871 12002 chr11 118405299 118405299 1 + G A rs143320045 118405290 + 118405270 118405310 41 TGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGAGACA TGAGCAGTGATGAGATCTGGCTCTGAGCCAAGGGCGAGACA < 41bp 1 0.330149128365447 1 0.0281803905963898 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 UTR3 Human protein_coding chr11:118405290 chr11:118405299 . . 0 30 hm5C_associated_SNPs_9611 0 0 0 0 1 Nucleus 1 0.500231643876759 1 0.999536712246481 hm5C_site_12002 DeepMRMD:1;iRNA_m5C:0.999536712246481 12003 chr11 118405299 118405299 1 + G A rs143320045 118405292 + 118405272 118405312 41 AGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGAGACAGG AGCAGTGATGAGATCTGGCTCTGAGCCAAGGGCGAGACAGG < 41bp 1 0.595161409737072 1 0.142927676439285 experiment 0.809677180525857 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 UTR3 Human protein_coding chr11:118405292 chr11:118405299 . . 0 28 hm5C_associated_SNPs_9612 0 0 0 0 1 Nucleus 1 0.500231643920808 1 0.999536712158384 hm5C_site_12003 DeepMRMD:1;iRNA_m5C:0.999536712158384 12004 chr11 118405305 118405305 1 + G A rs45505501 118405286 + 118405266 118405306 41 AGCGTGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGA AGCGTGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCAA < 41bp 1 0.579752481439226 1 0.306813895702362 experiment 0.840495037121548 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 UTR3 Human protein_coding chr11:118405286 chr11:118405305 . . 0 40 hm5C_associated_SNPs_9613 0 0 0 0 1 Nucleus 1 0.500231464048522 1 0.999537071902956 hm5C_site_12004 DeepMRMD:1;iRNA_m5C:0.999537071902956 12005 chr11 118405305 118405305 1 + G A rs45505501 118405290 + 118405270 118405310 41 TGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGAGACA TGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCAAGACA < 41bp 1 0.308090400994301 1 0.0711393654346466 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 UTR3 Human protein_coding chr11:118405290 chr11:118405305 . . 0 36 hm5C_associated_SNPs_9614 0 0 0 0 1 Nucleus 1 0.500231643896129 1 0.999536712207742 hm5C_site_12005 DeepMRMD:1;iRNA_m5C:0.999536712207742 12006 chr11 118405305 118405305 1 + G A rs45505501 118405292 + 118405272 118405312 41 AGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGAGACAGG AGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCAAGACAGG < 41bp 1 0.590734369620845 1 0.168308943510056 experiment 0.81853126075831 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 UTR3 Human protein_coding chr11:118405292 chr11:118405305 . . 0 34 hm5C_associated_SNPs_9615 0 0 0 0 1 Nucleus 1 0.50023164392102 1 0.99953671215796 hm5C_site_12006 DeepMRMD:1;iRNA_m5C:0.99953671215796 12007 chr11 118471563 118471563 1 + G A rs553165575 118471576 + 118471556 118471596 41 TCTCTGCGCGCAAGGACCCTCGACTCACCCCCATGTTTCAG TCTCTGCACGCAAGGACCCTCGACTCACCCCCATGTTTCAG < 41bp 1 0.489521201325599 1 0.0822188556194305 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARCN1 ENSG00000095139 UTR3 Human protein_coding chr11:118471576 chr11:118471563 . . 0 8 hm5C_associated_SNPs_9616 0 0 1 0 0 Cytosol 1 0.500231643920944 1 0.999536712158113 hm5C_site_12007 DeepMRMD:1;iRNA_m5C:0.999536712158113 12008 chr11 118471577 118471577 1 + G A rs79329602 118471576 + 118471556 118471596 41 TCTCTGCGCGCAAGGACCCTCGACTCACCCCCATGTTTCAG TCTCTGCGCGCAAGGACCCTCAACTCACCCCCATGTTTCAG < 41bp 1 0.470301801340722 1 0.159861385822296 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARCN1 ENSG00000095139 UTR3 Human protein_coding chr11:118471576 chr11:118471577 . . 0 22 hm5C_associated_SNPs_9617 0 0 1 1 0 Cytosol 1 0.500231643921695 1 0.999536712156609 hm5C_site_12008 DeepMRMD:1;iRNA_m5C:0.999536712156609 12009 chr11 118478342 118478342 1 + A G rs137931146 118478354 + 118478334 118478374 41 TCCTCCTAAGCCTGAGGCCACCGCGACCGAGCCGAGCCAGG TCCTCCTAGGCCTGAGGCCACCGCGACCGAGCCGAGCCAGG < 41bp 1 0.224494276578058 1 0.360450088977814 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PHLDB1 ENSG00000019144 UTR5 Human protein_coding chr11:118478354 chr11:118478342 . . 0 9 hm5C_associated_SNPs_9618 0 0 0 0 1 Cytosol 1 0.500231640298977 1 0.999536719402045 hm5C_site_12009 DeepMRMD:1;iRNA_m5C:0.999536719402045 12010 chr11 118952218 118952218 1 + G A rs149121697 118952207 + 118952187 118952227 41 AGCTTTTCTGTGATTGCTGACTACTTTGGCAGAGGTGTTTT AGCTTTTCTGTGATTGCTGACTACTTTGGCAAAGGTGTTTT < 41bp 1 0.244877679318185 1 0.274476051330566 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS11 ENSG00000160695 CDS Human protein_coding chr11:118952207 chr11:118952218 nonsynonymous SNV 1.000 0 32 hm5C_associated_SNPs_9619 0 0 0 0 1 cytosol 1 0.500231643921204 1 0.999536712157592 hm5C_site_12010 DeepMRMD:1;iRNA_m5C:0.999536712157592 12011 chr11 118955679 118955679 1 + C T rs589925 118955678 + 118955658 118955698 41 CGGTACTCGCCGGCCGGAGCCCCCGGCTTCCCGGGGCCGGG CGGTACTCGCCGGCCGGAGCCTCCGGCTTCCCGGGGCCGGG < 41bp 1 0.685972681193949 1 0.518853843212128 experiment 0.628054637612101 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMBS ENSG00000256269 UTR5 Human protein_coding chr11:118955678 chr11:118955679 . . 0 22 hm5C_associated_SNPs_9620 1 0 1 0 1 Cytosol 1 0.50018657198973 0.962292313575744 0.99962685602054 hm5C_site_12011 DeepMRMD:0.962292313575744;iRNA_m5C:0.99962685602054 Acute intermittent porphyria Acute intermittent porphyria 12012 chr11 118955679 118955679 1 + C T rs589925 118955681 + 118955661 118955701 41 TACTCGCCGGCCGGAGCCCCCGGCTTCCCGGGGCCGGGGGA TACTCGCCGGCCGGAGCCTCCGGCTTCCCGGGGCCGGGGGA < 41bp 1 0.64530422467517 1 0.770762085914612 experiment 0.709391550649661 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMBS ENSG00000256269 UTR5 Human protein_coding chr11:118955681 chr11:118955679 . . 0 19 hm5C_associated_SNPs_9621 1 0 1 0 1 Cytosol 1 0.500231643921091 0.458475828170776 0.999536712157818 hm5C_site_12012 DeepMRMD:0.458475828170776;iRNA_m5C:0.999536712157818 Acute intermittent porphyria Acute intermittent porphyria 12013 chr11 118955679 118955679 1 + C T rs589925 118955694 + 118955674 118955714 41 GAGCCCCCGGCTTCCCGGGGCCGGGGGACCTTAGCGGCACC GAGCCTCCGGCTTCCCGGGGCCGGGGGACCTTAGCGGCACC < 41bp 1 0.642054535364829 1 0.796288728713989 experiment 0.715890929270342 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMBS ENSG00000256269 UTR5 Human protein_coding chr11:118955694 chr11:118955679 . . 0 6 hm5C_associated_SNPs_9622 1 0 1 0 1 Cytosol 1 0.500231643921092 0.407422542572022 0.999536712157815 hm5C_site_12013 DeepMRMD:0.407422542572022;iRNA_m5C:0.999536712157815 Acute intermittent porphyria Acute intermittent porphyria 12014 chr11 118978411 118978411 1 + G C rs7940073 118978396 + 118978376 118978416 41 CGGCCCGCCCGGGCCATGCTCCCCCGGGGCAGCGGGTGAGC CGGCCCGCCCGGGCCATGCTCCCCCGGGGCAGCGGCTGAGC < 41bp 1 0.520775705105558 1 0.139415085315704 experiment 0.958448589788883 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control C2CD2L ENSG00000172269;ENSG00000172375 UTR5 Human other chr11:118978396 chr11:118978411 . . 0 36 hm5C_associated_SNPs_9623 0 0 1 0 0 Ribosome 1 0.500231643923166 1 0.999536712153668 hm5C_site_12014 DeepMRMD:1;iRNA_m5C:0.999536712153668 12015 chr11 118978411 118978411 1 + G C rs7940073 118978397 + 118978377 118978417 41 GGCCCGCCCGGGCCATGCTCCCCCGGGGCAGCGGGTGAGCC GGCCCGCCCGGGCCATGCTCCCCCGGGGCAGCGGCTGAGCC < 41bp 1 0.587013284470868 1 0.600263357162476 experiment 0.825973431058264 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control C2CD2L ENSG00000172269;ENSG00000172375 UTR5 Human other chr11:118978397 chr11:118978411 . . 0 35 hm5C_associated_SNPs_9624 0 0 1 0 0 Ribosome 1 0.500231643932593 0.799473285675048 0.999536712134815 hm5C_site_12015 DeepMRMD:0.799473285675048;iRNA_m5C:0.999536712134815 12016 chr11 118997714 118997714 1 + G A rs143017588 118997717 + 118997697 118997737 41 CTACAGTGTGAGTGGGGGTCCTGCTCCTTTGTGTGCTCAAC CTACAGTGTGAGTGGGGATCCTGCTCCTTTGTGTGCTCAAC < 41bp 1 0.453063762100602 1 0.437907576560974 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HINFP ENSG00000172273 CDS Human protein_coding chr11:118997717 chr11:118997714 synonymous SNV . 0 18 hm5C_associated_SNPs_9626 0 0 1 0 0 Cytosol 1 0.500231774154433 1 0.999536451691134 hm5C_site_12016 DeepMRMD:1;iRNA_m5C:0.999536451691134 12017 chr11 119045951 119045951 1 + C A rs145779362 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTCTGAGGGCTCTGCCTCTGCTCTTCAACCTGATCA < 41bp 1 0.33288821882035 1 0.281736850738525 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045951 synonymous SNV . 0 11 hm5C_associated_SNPs_9627 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12017 DeepMRMD:1;iRNA_m5C:0.999536712157815 12018 chr11 119045952 119045952 1 + G A rs372662621 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTCTGCAGGCTCTGCCTCTGCTCTTCAACCTGATCA < 41bp 1 0.283319875877405 1 0.37960809469223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045952 nonsynonymous SNV 0.963 3 12 hm5C_associated_SNPs_9628 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12018 DeepMRMD:1;iRNA_m5C:0.999536712157815 12019 chr11 119077032 119077032 1 + G A rs548262208 119077043 + 119077023 119077063 41 GCGGCGGCGGCCGGGAGAGGCCCCTCCTTCACGCCCTGCTT GCGGCGGCGACCGGGAGAGGCCCCTCCTTCACGCCCTGCTT < 41bp 1 0.314194659959602 1 0.11103281378746 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CBL ENSG00000110395 UTR5 Human protein_coding chr11:119077043 chr11:119077032 . . 0 10 hm5C_associated_SNPs_9629 1 0 1 0 0 Ribosome 1 0.500231643921246 1 0.999536712157508 hm5C_site_12019 DeepMRMD:1;iRNA_m5C:0.999536712157508 Noonan-Like Syndrome Disorder Noonan-Like Syndrome Disorder 12020 chr11 119170480 119170480 1 + G A rs17122769 119170488 + 119170468 119170508 41 TCTCCTGCCCATGTAGCTACCTAGCACACCATCTCCCTGCT TCTCCTGCCCATATAGCTACCTAGCACACCATCTCCCTGCT < 41bp 1 0.225276825714389 1 0.051552414894104 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119170488 chr11:119170480 nonsynonymous SNV 0.992 1 13 hm5C_associated_SNPs_9630 3 0 1 0 0 Ribosome 1 0.500231643685851 1 0.999536712628297 hm5C_site_12020 DeepMRMD:1;iRNA_m5C:0.999536712628297 not specified not specified 12021 chr11 120099658 120099658 1 + A C rs2508489 120099678 + 120099658 120099698 41 ACGGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCC CCGGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCC < 41bp 1 0.679650212564023 1 0.756683111190796 experiment 0.640699574871954 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099678 chr11:120099658 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_9631 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.486633777618408 0.999536712157815 hm5C_site_12021 DeepMRMD:0.486633777618408;iRNA_m5C:0.999536712157815 12022 chr11 120099671 120099671 1 + C A rs149920245 120099678 + 120099658 120099698 41 ACGGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCC ACGGGAAGCCCTGAGTCTGCCGCTATGGCCTGAGCCTGGCC < 41bp 1 0.678271764026733 1 0.795372366905212 experiment 0.643456471946535 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099678 chr11:120099671 stopgain 0.003 1 14 hm5C_associated_SNPs_9632 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.409255266189576 0.999536712157815 hm5C_site_12022 DeepMRMD:0.409255266189576;iRNA_m5C:0.999536712157815 12023 chr11 120099671 120099671 1 + C A rs149920245 120099680 + 120099660 120099700 41 GGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG GGGAAGCCCTGAGTCTGCCGCTATGGCCTGAGCCTGGCCTG < 41bp 1 0.507642575337611 1 0.488498747348785 experiment 0.984714849324777 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099680 chr11:120099671 stopgain 0.003 1 12 hm5C_associated_SNPs_9633 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12023 DeepMRMD:1;iRNA_m5C:0.999536712157815 12024 chr11 120099679 120099679 1 + G A rs2508490 120099678 + 120099658 120099698 41 ACGGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCC ACGGGAAGCCCTGCGTCTGCCACTATGGCCTGAGCCTGGCC < 41bp 1 0.641900458889624 1 0.223723977804184 experiment 0.716199082220752 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099678 chr11:120099679 nonsynonymous SNV 0.517 0 22 hm5C_associated_SNPs_9634 0 1 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12024 DeepMRMD:1;iRNA_m5C:0.999536712157815 12025 chr11 120099679 120099679 1 + G A rs2508490 120099680 + 120099660 120099700 41 GGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG GGGAAGCCCTGCGTCTGCCACTATGGCCTGAGCCTGGCCTG < 41bp 1 0.578768971422476 1 0.311993420124054 experiment 0.842462057155047 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099680 chr11:120099679 nonsynonymous SNV 0.517 0 20 hm5C_associated_SNPs_9635 0 1 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12025 DeepMRMD:1;iRNA_m5C:0.999536712157815 12026 chr11 120280115 120280115 1 + A G rs190640580 120280127 + 120280107 120280147 41 CTCCTCCAAGAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT CTCCTCCAGGAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT < 41bp 1 0.232227013579753 1 0.424672454595566 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120280127 chr11:120280115 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_9636 0 0 1 0 2 Cytosol 1 0.500231644329902 1 0.999536711340195 hm5C_site_12026 DeepMRMD:1;iRNA_m5C:0.999536711340195 12027 chr11 120352081 120352081 1 + C T rs35811219 120352068 + 120352048 120352088 41 GCAGCCCATGACAGGCATCCCTGCTGTGGAATCCACCCACC GCAGCCCATGACAGGCATCCCTGCTGTGGAATCTACCCACC < 41bp 1 0.611960767487394 1 0.138664215803146 experiment 0.776078465025212 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120352068 chr11:120352081 synonymous SNV . 0 34 hm5C_associated_SNPs_9637 0 0 1 0 0 Cytosol 1 0.500231643921312 1 0.999536712157375 hm5C_site_12027 DeepMRMD:1;iRNA_m5C:0.999536712157375 12028 chr11 120357341 120357341 1 + G A rs79425731 120357345 + 120357325 120357365 41 AACAAGGAGTTCATCCGTTGCTCACATCTTTCATTGGTGCC AACAAGGAGTTCATCCATTGCTCACATCTTTCATTGGTGCC < 41bp 1 0.105100682412223 1 0.240309566259384 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF12 ENSG00000196914 UTR3 Human protein_coding chr11:120357345 chr11:120357341 . . 0 17 hm5C_associated_SNPs_9638 0 0 1 0 0 Cytosol 1 0.500144108231158 1 0.999711783537683 hm5C_site_12028 DeepMRMD:1;iRNA_m5C:0.999711783537683 12029 chr11 120776139 120776139 1 + C T rs113906117 120776153 + 120776133 120776173 41 GGATGGCGTGTACGGCGTTCCCGAGGCCAACGGCACCTGGA GGATGGTGTGTACGGCGTTCCCGAGGCCAACGGCACCTGGA < 41bp 1 0.300397396676434 1 0.72559130191803 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120776153 chr11:120776139 synonymous SNV . 0 7 hm5C_associated_SNPs_9639 0 0 0 0 0 membrane 1 0.500231643918141 0.54881739616394 0.999536712163718 hm5C_site_12029 DeepMRMD:0.54881739616394;iRNA_m5C:0.999536712163718 12030 chr11 122430662 122430662 1 + T G rs188672814 122430665 + 122430645 122430685 41 GTAATGGGTAGCCTGGATAGCTCAGTTGGTAGAGCATCAGA GTAATGGGTAGCCTGGAGAGCTCAGTTGGTAGAGCATCAGA < 41bp 1 0.531608161358473 1 0.297733247280121 experiment 0.936783677283055 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR100HG;UBASH3B ENSG00000253035;ENSG00000223265 intergenic Human other chr11:122430665 chr11:122430662 . . 0 18 hm5C_associated_SNPs_9640 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12030 DeepMRMD:1;iRNA_m5C:0.999536712157815 12031 chr11 122430682 122430682 1 + C A rs11493813 122430665 + 122430645 122430685 41 GTAATGGGTAGCCTGGATAGCTCAGTTGGTAGAGCATCAGA GTAATGGGTAGCCTGGATAGCTCAGTTGGTAGAGCATAAGA < 41bp 1 0.589934710880631 1 0.247324079275131 experiment 0.820130578238737 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR100HG;UBASH3B ENSG00000253035;ENSG00000223265 intergenic Human other chr11:122430665 chr11:122430682 . . 0 38 hm5C_associated_SNPs_9641 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12031 DeepMRMD:1;iRNA_m5C:0.999536712157815 12032 chr11 122430682 122430682 1 + C A rs11493813 122430686 + 122430666 122430706 41 TCAGTTGGTAGAGCATCAGACTTTTAATCTGAGGGTCCAGG TCAGTTGGTAGAGCATAAGACTTTTAATCTGAGGGTCCAGG < 41bp 1 0.0301246147049406 1 0.00469264388084412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR100HG;UBASH3B ENSG00000253035;ENSG00000223265 intergenic Human other chr11:122430686 chr11:122430682 . . 0 17 hm5C_associated_SNPs_9642 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12032 DeepMRMD:1;iRNA_m5C:0.999536712157815 12033 chr11 122888570 122888570 1 + G T rs7933723 122888575 + 122888555 122888595 41 CAGATATCTCCAGAAGAACCCGGAGCTCAGTTCTTGATTCG CAGATATCTCCAGAATAACCCGGAGCTCAGTTCTTGATTCG < 41bp 1 0.515811556775821 1 0.625828146934509 experiment 0.968376886448357 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOC341056 ENSG00000213184 ncRNA_exonic Human processed_pseudogene chr11:122888575 chr11:122888570 . . 0 16 hm5C_associated_SNPs_9643 0 0 0 0 0 unknown 1 0.500231643915479 0.748343706130982 0.999536712169042 hm5C_site_12033 DeepMRMD:0.748343706130982;iRNA_m5C:0.999536712169042 12034 chr11 123396844 123396844 1 + C T rs17740690 123396827 + 123396807 123396847 41 TGTAACGGGGATGCTAAGGACACGGTCAGTGGATTATCGTG TGTAACGGGGATGCTAAGGACACGGTCAGTGGATTATTGTG < 41bp 1 0.605274427488263 1 0.456524670124054 experiment 0.789451145023474 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GRAMD1B ENSG00000023171 UTR5 Human protein_coding chr11:123396827 chr11:123396844 . . 0 38 hm5C_associated_SNPs_9644 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_12034 DeepMRMD:1;iRNA_m5C:0.999536712157815 12035 chr11 123989006 123989006 1 + T G rs35485142 123989020 + 123989000 123989040 41 CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATGTGC CCAACCGGGGTCGAAGGCGGCAGTCACCCTGAAGTATGTGC < 41bp 1 0.188179297055306 1 0.281171411275864 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VWA5A ENSG00000110002 CDS Human protein_coding chr11:123989020 chr11:123989006 synonymous SNV . 0 7 hm5C_associated_SNPs_9645 0 0 0 0 0 nucleus 1 0.500231644193501 1 0.999536711612998 hm5C_site_12035 DeepMRMD:1;iRNA_m5C:0.999536711612998 12036 chr11 124492796 124492796 1 + G A rs114302152 124492794 + 124492774 124492814 41 CACGGAAGTGCTGGGAGGCGCCGGGAGCCCGTTCGGTTGCG CACGGAAGTGCTGGGAGGCGCCAGGAGCCCGTTCGGTTGCG < 41bp 1 0.655728218470163 1 0.737667322158813 experiment 0.688543563059674 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBRG1 ENSG00000154144 UTR5 Human protein_coding chr11:124492794 chr11:124492796 . . 0 23 hm5C_associated_SNPs_9646 0 0 1 0 0 Ribosome 1 0.500231644554281 0.524665355682374 0.999536710891437 hm5C_site_12036 DeepMRMD:0.524665355682374;iRNA_m5C:0.999536710891437 12037 chr11 124500662 124500662 1 + G C rs147564095 124500660 + 124500640 124500680 41 GGGGGAAACTAATGCCTAACCTGCTTCCAGCTGGAGCTGAC GGGGGAAACTAATGCCTAACCTCCTTCCAGCTGGAGCTGAC < 41bp 1 0.661716834036285 1 0.364935547113419 experiment 0.67656633192743 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124500660 chr11:124500662 synonymous SNV . 0 23 hm5C_associated_SNPs_9647 0 0 1 0 2 Ribosome 1 0.500231638040985 1 0.999536723918029 hm5C_site_12037 DeepMRMD:1;iRNA_m5C:0.999536723918029 12038 chr11 124958298 124958298 1 + C T rs57985403 124958285 + 124958265 124958305 41 CAAAAGGGATGGGACTAGGGCTGAGTTGTGTCTCCATTTTG CAAAAGGGATGGGACTAGGGCTGAGTTGTGTCTTCATTTTG < 41bp 1 0.375860405320509 1 0.118224531412125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC37A2 ENSG00000134955 UTR3 Human protein_coding chr11:124958285 chr11:124958298 . . 0 34 hm5C_associated_SNPs_9649 0 0 0 0 0 nucleolus 1 0.500231643921065 1 0.999536712157871 hm5C_site_12038 DeepMRMD:1;iRNA_m5C:0.999536712157871 12039 chr11 125439384 125439384 1 + A G rs551704338 125439395 + 125439375 125439415 41 TGCGGGCGCAGCGGCCCCGGCCCTGGAAGCGCCCCGGCGGA TGCGGGCGCGGCGGCCCCGGCCCTGGAAGCGCCCCGGCGGA < 41bp 1 0.657146083056512 1 0.670785784721375 experiment 0.685707833886975 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EI24 ENSG00000149547 UTR5 Human protein_coding chr11:125439395 chr11:125439384 . . 0 10 hm5C_associated_SNPs_9651 0 0 1 0 1 Cytosol 1 0.500231499015546 0.65842843055725 0.999537001968908 hm5C_site_12039 DeepMRMD:0.65842843055725;iRNA_m5C:0.999537001968908 12040 chr11 125453890 125453890 1 + C T rs7094 125453884 + 125453864 125453904 41 GGAACACTTTGTTTTTCTCCCTGTGCCATTTACCCTTCCAC GGAACACTTTGTTTTTCTCCCTGTGCTATTTACCCTTCCAC < 41bp 1 0.389036417016503 1 0.0963094234466553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A-AS1 ENSG00000254671 ncRNA_intronic Human antisense chr11:125453884 chr11:125453890 . . 0 27 hm5C_associated_SNPs_9653 0 0 1 1 0 unknown 1 0.500231643750091 1 0.999536712499817 hm5C_site_12040 DeepMRMD:1;iRNA_m5C:0.999536712499817 12041 chr11 125482982 125482982 1 + T C rs34079079 125482974 + 125482954 125482994 41 CCAGTGAGGCCTACTCTTCTCCGTCCATTGTACTATCTGCC CCAGTGAGGCCTACTCTTCTCCGTCCATCGTACTATCTGCC < 41bp 1 0.0933496287426817 1 0.243051528930664 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125482974 chr11:125482982 synonymous SNV . 0 29 hm5C_associated_SNPs_9654 1 0 1 0 2 Endoplasmic reticulum 1 0.50023160096506 1 0.99953679806988 hm5C_site_12041 DeepMRMD:1;iRNA_m5C:0.99953679806988 not specified not specified 12042 chr11 126143246 126143246 1 + G A rs34542988 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAATCGATGCTCCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.491133041479878 1 0.115163952112198 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143246 nonsynonymous SNV 0.001 1 11 hm5C_associated_SNPs_9656 2 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12042 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 12043 chr11 126213242 126213242 1 + G A rs35836343 126213246 + 126213226 126213266 41 ATCTGCCATCGCCGGGGCATCAGATCCCTACGCGACCTTAC ATCTGCCATCGCCGGGACATCAGATCCCTACGCGACCTTAC < 41bp 1 0.495544040984812 1 0.659728467464447 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126213246 chr11:126213242 nonsynonymous SNV 0.956 1 17 hm5C_associated_SNPs_9657 1 0 0 0 2 Ribosome 1 0.50023164392392 0.680543065071106 0.999536712152159 hm5C_site_12043 DeepMRMD:0.680543065071106;iRNA_m5C:0.999536712152159 not provided not provided 12044 chr11 126215298 126215298 1 + C T rs142492066 126215278 + 126215258 126215298 41 GCTACCGGATGAAGGGAGACCATCTGCGAGTATACCTGCAC GCTACCGGATGAAGGGAGACCATCTGCGAGTATACCTGCAT < 41bp 1 0.239699546534921 1 0.234757512807846 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126215278 chr11:126215298 synonymous SNV . 0 41 hm5C_associated_SNPs_9658 0 0 1 0 1 Ribosome 1 0.500231866691496 1 0.999536266617008 hm5C_site_12044 DeepMRMD:1;iRNA_m5C:0.999536266617008 12045 chr11 129991553 129991553 1 + G A rs537248071 129991572 + 129991552 129991592 41 TGCTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATAT TACTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATAT < 41bp 1 0.141426880361133 1 0.222380101680756 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:129991572 chr11:129991553 synonymous SNV . 0 2 hm5C_associated_SNPs_9659 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643601029 1 0.999536712797942 hm5C_site_12045 DeepMRMD:1;iRNA_m5C:0.999536712797942 12046 chr11 129991606 129991606 1 + A G rs11822318 129991624 + 129991604 129991644 41 TCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAG TCGGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAG < 41bp 1 0.276257869517728 1 0.103152245283127 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout APLP2;APLP2 ENSG00000084234 CDS Human protein_coding chr11:129991624 chr11:129991606 nonsynonymous SNV 0.914 1 3 hm5C_associated_SNPs_9660 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12046 DeepMRMD:1;iRNA_m5C:0.999536712157815 12047 chr11 129991618 129991618 1 + T C rs370107772 129991624 + 129991604 129991644 41 TCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAG TCAGACAAAGATTACTGGATCTGTGTCAAAAGAAGAGGAAG < 41bp 1 0.282316871884627 1 0.156728088855743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout APLP2 ENSG00000084234 CDS Human protein_coding chr11:129991624 chr11:129991618 nonsynonymous SNV 0.044 1 15 hm5C_associated_SNPs_9661 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_12047 DeepMRMD:1;iRNA_m5C:0.999536712157815 12048 chr11 129991618 129991618 1 + T C rs370107772 129991630 + 129991610 129991650 41 AAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAGAGGAAG AAAGATTACTGGATCTGTGTCAAAAGAAGAGGAAGAGGAAG < 41bp 1 0.475558560435481 1 0.724222302436829 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout APLP2 ENSG00000084234 CDS Human protein_coding chr11:129991630 chr11:129991618 nonsynonymous SNV 0.044 1 9 hm5C_associated_SNPs_9662 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.551555395126342 0.999536712157815 hm5C_site_12048 DeepMRMD:0.551555395126342;iRNA_m5C:0.999536712157815 12049 chr11 129991646 129991646 1 + G T rs199857117 129991630 + 129991610 129991650 41 AAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAGAGGAAG AAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAGATGAAG < 41bp 1 0.447547392924097 1 0.620107412338257 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout APLP2 ENSG00000084234 CDS Human protein_coding chr11:129991630 chr11:129991646 nonsynonymous SNV 0.130 1 37 hm5C_associated_SNPs_9663 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.759785175323486 0.999536712157816 hm5C_site_12049 DeepMRMD:0.759785175323486;iRNA_m5C:0.999536712157816 12050 chr11 130005552 130005552 1 + T C rs138762568 130005561 + 130005541 130005581 41 TCTGAGGAGAGTGAGGAGATCCCACCGTTCCACCCCTTCCA TCTGAGGAGAGCGAGGAGATCCCACCGTTCCACCCCTTCCA < 41bp 1 0.320038647091851 1 0.147471010684967 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130005561 chr11:130005552 synonymous SNV . 0 12 hm5C_associated_SNPs_9664 0 0 1 0 2 Endoplasmic reticulum 1 0.500231642379917 1 0.999536715240166 hm5C_site_12050 DeepMRMD:1;iRNA_m5C:0.999536715240166 12051 chr11 134020750 134020750 1 + C A rs530777526 134020762 + 134020742 134020782 41 TTAAAGAACGTCAGGTGGAGCAGCCAGGTGAAAGGCCTGGC TTAAAGAAAGTCAGGTGGAGCAGCCAGGTGAAAGGCCTGGC < 41bp 1 0.660790736884131 1 0.376302182674408 experiment 0.678418526231737 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control JAM3 ENSG00000166086 UTR3 Human protein_coding chr11:134020762 chr11:134020750 . . 0 9 hm5C_associated_SNPs_9665 0 0 1 0 0 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_12051 DeepMRMD:1;iRNA_m5C:0.999536712157815 12052 chr11 134244123 134244123 1 + C A rs3741097 134244119 + 134244099 134244139 41 GGGTAGCTTGTCCATCAGCTCCACCCCTTGTGACACCTTTC GGGTAGCTTGTCCATCAGCTCCACACCTTGTGACACCTTTC < 41bp 1 0.204685930105134 1 0.0383476614952087 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134244119 chr11:134244123 synonymous SNV . 0 25 hm5C_associated_SNPs_9666 0 0 1 0 2 Ribosome 1 0.50023164392923 1 0.99953671214154 hm5C_site_12052 DeepMRMD:1;iRNA_m5C:0.99953671214154 12053 chr12 551506 551506 1 + C T rs149182859 551491 + 551471 551511 41 AGAAGCACTCACAGAGGCTGCCTTTCTCCTGAGCTCGGGGA AGAAGCACTCACAGAGGCTGCCTTTCTCCTGAGCTTGGGGA < 41bp 1 0.0457943089098087 1 0.0402143895626068 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC77 ENSG00000120647 UTR3 Human protein_coding chr12:551491 chr12:551506 . . 0 36 hm5C_associated_SNPs_9667 0 0 1 0 0 cytosol 1 0.500231643913549 1 0.999536712172902 hm5C_site_12053 DeepMRMD:1;iRNA_m5C:0.999536712172902 12054 chr12 987482 987482 1 + G A rs1012729 987472 + 987452 987492 41 TGAGGCCACTACTGCACAGCCAGTGAGTCAGCCTCAAGCTC TGAGGCCACTACTGCACAGCCAGTGAGTCAACCTCAAGCTC < 41bp 1 0.317875309723207 1 0.0552375316619873 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WNK1 ENSG00000060237 CDS Human protein_coding chr12:987472 chr12:987482 synonymous SNV . 0 31 hm5C_associated_SNPs_9668 3 0 1 0 1 Ribosome 1 0.500230728444632 1 0.999538543110737 hm5C_site_12054 DeepMRMD:1;iRNA_m5C:0.999538543110737 not specified not specified 12055 chr12 987482 987482 1 + G A rs1012729 987483 + 987463 987503 41 CTGCACAGCCAGTGAGTCAGCCTCAAGCTCCACAAGTCTTG CTGCACAGCCAGTGAGTCAACCTCAAGCTCCACAAGTCTTG < 41bp 1 0.176001497777923 1 0.0226494967937469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WNK1 ENSG00000060237 CDS Human protein_coding chr12:987483 chr12:987482 synonymous SNV . 0 20 hm5C_associated_SNPs_9669 3 0 1 0 1 Ribosome 1 0.500231643922 1 0.999536712156 hm5C_site_12055 DeepMRMD:1;iRNA_m5C:0.999536712156 not specified not specified 12056 chr12 1005644 1005644 1 + G A rs61736907 1005625 + 1005605 1005645 41 GGAACAAGCTGTTCTTCCTGCTGTGATACCAAAGAAAGAGA GGAACAAGCTGTTCTTCCTGCTGTGATACCAAAGAAAGAAA < 41bp 1 0.131991588587489 1 0.458604723215103 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WNK1 ENSG00000060237 CDS Human protein_coding chr12:1005625 chr12:1005644 synonymous SNV . 0 40 hm5C_associated_SNPs_9670 2 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12056 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary sensory and autonomic neuropathy type II Hereditary sensory and autonomic neuropathy type II 12057 chr12 1890199 1890199 1 + G A rs16928751 1890217 + 1890197 1890237 41 CAGTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAG CAATGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAG < 41bp 1 0.0485552756075317 1 0.0339580774307251 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890217 chr12:1890199 synonymous SNV . 0 3 hm5C_associated_SNPs_9671 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12057 DeepMRMD:1;iRNA_m5C:0.999536712157815 12058 chr12 1890199 1890199 1 + G A rs16928751 1890218 + 1890198 1890238 41 AGTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGA AATGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGA < 41bp 1 0.271080237329274 1 0.0685460865497589 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890218 chr12:1890199 synonymous SNV . 0 2 hm5C_associated_SNPs_9672 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12058 DeepMRMD:1;iRNA_m5C:0.999536712157815 12059 chr12 1890199 1890199 1 + G A rs16928751 1890219 + 1890199 1890239 41 GTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAG ATGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAG < 41bp 1 0.520369245485278 1 0.521678805351257 experiment 0.959261509029445 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890219 chr12:1890199 synonymous SNV . 0 1 hm5C_associated_SNPs_9673 0 0 1 0 1 chromatin 1 0.500231643921092 0.956642389297486 0.999536712157815 hm5C_site_12059 DeepMRMD:0.956642389297486;iRNA_m5C:0.999536712157815 12060 chr12 1896956 1896956 1 + C T rs1044471 1896973 + 1896953 1896993 41 TCCCTTGCCCTTGCAATCTCCAGCAAAAGGTGGGATCTAGG TCCTTTGCCCTTGCAATCTCCAGCAAAAGGTGGGATCTAGG < 41bp 1 0.527515768537597 1 0.813740015029907 experiment 0.944968462924807 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADIPOR2 ENSG00000006831 UTR3 Human protein_coding chr12:1896973 chr12:1896956 . . 0 4 hm5C_associated_SNPs_9674 0 0 1 0 0 chromatin 1 0.500231643919606 0.372519969940186 0.999536712160787 hm5C_site_12060 DeepMRMD:0.372519969940186;iRNA_m5C:0.999536712160787 12061 chr12 2939489 2939489 1 + A G rs191933112 2939487 + 2939467 2939507 41 GGGAATTTATTGCGAATGTTCAATAGTGACTGAGTGGTTAA GGGAATTTATTGCGAATGTTCAGTAGTGACTGAGTGGTTAA < 41bp 1 0.5390319140645 1 0.413767784833908 experiment 0.921936171871 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NRIP2 ENSG00000111203 UTR3 Human protein_coding chr12:2939487 chr12:2939489 . . 0 23 hm5C_associated_SNPs_9675 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12061 DeepMRMD:1;iRNA_m5C:0.999536712157815 12062 chr12 3393631 3393631 1 + G A rs143741332 3393615 + 3393595 3393635 41 CCTGGGGCCACGGACATCAGCAGTGGGTTGGGTGGCGATTA CCTGGGGCCACGGACATCAGCAGTGGGTTGGGTGGCAATTA < 41bp 1 0.570142837785594 1 0.764982342720032 experiment 0.859714324428812 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TSPAN9 ENSG00000011105 UTR3 Human protein_coding chr12:3393615 chr12:3393631 . . 0 37 hm5C_associated_SNPs_9677 0 0 1 0 0 Nucleus 1 0.500231643921086 0.470035314559936 0.999536712157828 hm5C_site_12062 DeepMRMD:0.470035314559936;iRNA_m5C:0.999536712157828 12063 chr12 4459032 4459032 1 + G A rs7309402 4459031 + 4459011 4459051 41 CAAATTTTGCAAAGATATGACGGTAAAGTATGACTCAAGAC CAAATTTTGCAAAGATATGACAGTAAAGTATGACTCAAGAC < 41bp 1 0.419445558427085 1 0.320029616355896 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TIGAR ENSG00000078237 CDS Human protein_coding chr12:4459031 chr12:4459032 synonymous SNV . 0 22 hm5C_associated_SNPs_9678 0 0 1 0 1 Nucleus 1 0.50023164336073 1 0.999536713278539 hm5C_site_12063 DeepMRMD:1;iRNA_m5C:0.999536713278539 12064 chr12 4716513 4716513 1 + C A rs2255588 4716505 + 4716485 4716525 41 TTATTAAGGTGCTGGGTCTGCCGCCAGCCGGCTTCATTCAG TTATTAAGGTGCTGGGTCTGCCGCCAGCAGGCTTCATTCAG < 41bp 1 0.235517047639757 1 0.259628295898438 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4716505 chr12:4716513 synonymous SNV . 0 29 hm5C_associated_SNPs_9679 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12064 DeepMRMD:1;iRNA_m5C:0.999536712157815 12065 chr12 6309560 6309560 1 + G A rs533854109 6309558 + 6309538 6309578 41 TTAAAAGTGCAGCCGGAGACCAGCCTACAGCCGCCTGCATC TTAAAAGTGCAGCCGGAGACCAACCTACAGCCGCCTGCATC < 41bp 1 0.358619096369343 1 0.0904938280582428 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CD9 ENSG00000010278 UTR5 Human protein_coding chr12:6309558 chr12:6309560 . . 0 23 hm5C_associated_SNPs_9680 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12065 DeepMRMD:1;iRNA_m5C:0.999536712157815 12066 chr12 6344415 6344415 1 + G A rs542130343 6344427 + 6344407 6344447 41 GTCCAGGAGTTTTACAAGGACACCTACAACAAGCTGAAAAC GTCCAGGAATTTTACAAGGACACCTACAACAAGCTGAAAAC < 41bp 1 0.351270997862004 1 0.347819030284882 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD9 ENSG00000010278 CDS Human protein_coding chr12:6344427 chr12:6344415 synonymous SNV . 0 9 hm5C_associated_SNPs_9681 0 0 1 0 2 Ribosome 1 0.500231643916595 1 0.99953671216681 hm5C_site_12066 DeepMRMD:1;iRNA_m5C:0.99953671216681 12067 chr12 6619402 6619402 1 + T A rs714775 6619392 + 6619372 6619412 41 TTCCTACATTTTGTCAGCCACATGATGATATCAAGGCTGTT TTCCTACATTTTGTCAGCCACATGATGATAACAAGGCTGTT < 41bp 1 0.198205068751896 1 0.103689640760422 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619392 chr12:6619402 . . 0 31 hm5C_associated_SNPs_9682 0 0 1 0 0 unknown 1 0.500231648436014 1 0.999536703127972 hm5C_site_12067 DeepMRMD:1;iRNA_m5C:0.999536703127972 12068 chr12 6619402 6619402 1 + T A rs714775 6619403 + 6619383 6619423 41 TGTCAGCCACATGATGATATCAAGGCTGTTGTGATTCAGTT TGTCAGCCACATGATGATAACAAGGCTGTTGTGATTCAGTT < 41bp 1 0.467953792976632 1 0.390171617269516 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619403 chr12:6619402 . . 0 20 hm5C_associated_SNPs_9683 0 0 1 0 0 unknown 1 0.500231644496811 1 0.999536711006378 hm5C_site_12068 DeepMRMD:1;iRNA_m5C:0.999536711006378 12069 chr12 6619402 6619402 1 + T A rs714775 6619408 + 6619388 6619428 41 GCCACATGATGATATCAAGGCTGTTGTGATTCAGTTGGTTT GCCACATGATGATAACAAGGCTGTTGTGATTCAGTTGGTTT < 41bp 1 0.0991398117270071 1 0.0602985918521881 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619408 chr12:6619402 . . 0 15 hm5C_associated_SNPs_9684 0 0 1 0 0 unknown 1 0.500229314632781 1 0.999541370734438 hm5C_site_12069 DeepMRMD:1;iRNA_m5C:0.999541370734438 12070 chr12 6619402 6619402 1 + T A rs714775 6619419 + 6619399 6619439 41 ATATCAAGGCTGTTGTGATTCAGTTGGTTTGGCTAAGCCCA ATAACAAGGCTGTTGTGATTCAGTTGGTTTGGCTAAGCCCA < 41bp 1 0.230078982501848 1 0.378766000270844 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619419 chr12:6619402 . . 0 4 hm5C_associated_SNPs_9685 0 0 1 0 0 unknown 1 0.500231643448099 1 0.999536713103802 hm5C_site_12070 DeepMRMD:1;iRNA_m5C:0.999536713103802 12071 chr12 6619522 6619522 1 + G C rs138128987 6619502 + 6619482 6619522 41 TACAGAGTTATGTGTGTTCACTGTAAGGGCAGACCAACAAG TACAGAGTTATGTGTGTTCACTGTAAGGGCAGACCAACAAC < 41bp 1 0.526330512158692 1 0.241849631071091 experiment 0.947338975682615 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619502 chr12:6619522 . . 0 41 hm5C_associated_SNPs_9686 0 0 1 0 0 unknown 1 0.500231643890934 1 0.999536712218131 hm5C_site_12071 DeepMRMD:1;iRNA_m5C:0.999536712218131 12072 chr12 6619522 6619522 1 + G C rs138128987 6619511 + 6619491 6619531 41 ATGTGTGTTCACTGTAAGGGCAGACCAACAAGAACTTTTTC ATGTGTGTTCACTGTAAGGGCAGACCAACAACAACTTTTTC < 41bp 1 0.0972631056313068 1 0.2369544506073 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619511 chr12:6619522 . . 0 32 hm5C_associated_SNPs_9687 0 0 1 0 0 unknown 1 0.500224262372449 1 0.999551475255103 hm5C_site_12072 DeepMRMD:1;iRNA_m5C:0.999551475255103 12073 chr12 6619522 6619522 1 + G C rs138128987 6619515 + 6619495 6619535 41 GTGTTCACTGTAAGGGCAGACCAACAAGAACTTTTTCCTAC GTGTTCACTGTAAGGGCAGACCAACAACAACTTTTTCCTAC < 41bp 1 0.0492914041267072 1 0.319244593381882 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619515 chr12:6619522 . . 0 28 hm5C_associated_SNPs_9688 0 0 1 0 0 unknown 1 0.500231628316058 1 0.999536743367884 hm5C_site_12073 DeepMRMD:1;iRNA_m5C:0.999536743367884 12074 chr12 6619522 6619522 1 + G C rs138128987 6619516 + 6619496 6619536 41 TGTTCACTGTAAGGGCAGACCAACAAGAACTTTTTCCTACT TGTTCACTGTAAGGGCAGACCAACAACAACTTTTTCCTACT < 41bp 1 0.455648107100079 1 0.387143135070801 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619516 chr12:6619522 . . 0 27 hm5C_associated_SNPs_9689 0 0 1 0 0 unknown 1 0.500231643807613 1 0.999536712384774 hm5C_site_12074 DeepMRMD:1;iRNA_m5C:0.999536712384774 12075 chr12 6619522 6619522 1 + G C rs138128987 6619519 + 6619499 6619539 41 TCACTGTAAGGGCAGACCAACAAGAACTTTTTCCTACTTTT TCACTGTAAGGGCAGACCAACAACAACTTTTTCCTACTTTT < 41bp 1 0.288797743259532 1 0.229980498552322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619519 chr12:6619522 . . 0 24 hm5C_associated_SNPs_9690 0 0 1 0 0 unknown 1 0.500231642686425 1 0.99953671462715 hm5C_site_12075 DeepMRMD:1;iRNA_m5C:0.99953671462715 12076 chr12 6619522 6619522 1 + G C rs138128987 6619525 + 6619505 6619545 41 TAAGGGCAGACCAACAAGAACTTTTTCCTACTTTTGAGCTA TAAGGGCAGACCAACAACAACTTTTTCCTACTTTTGAGCTA < 41bp 1 0.0397333100201432 1 0.0371476411819458 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619525 chr12:6619522 . . 0 18 hm5C_associated_SNPs_9691 0 0 1 0 0 unknown 1 0.500231643848617 1 0.999536712302766 hm5C_site_12076 DeepMRMD:1;iRNA_m5C:0.999536712302766 12077 chr12 6619522 6619522 1 + G C rs138128987 6619531 + 6619511 6619551 41 CAGACCAACAAGAACTTTTTCCTACTTTTGAGCTACCTCTT CAGACCAACAACAACTTTTTCCTACTTTTGAGCTACCTCTT < 41bp 1 0.0199275660491663 1 0.109167873859406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619531 chr12:6619522 . . 0 12 hm5C_associated_SNPs_9692 0 0 1 0 0 unknown 1 0.500231643943237 1 0.999536712113527 hm5C_site_12077 DeepMRMD:1;iRNA_m5C:0.999536712113527 12078 chr12 6619522 6619522 1 + G C rs138128987 6619532 + 6619512 6619552 41 AGACCAACAAGAACTTTTTCCTACTTTTGAGCTACCTCTTT AGACCAACAACAACTTTTTCCTACTTTTGAGCTACCTCTTT < 41bp 1 0.123232891755098 1 0.0694769024848938 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619532 chr12:6619522 . . 0 11 hm5C_associated_SNPs_9693 0 0 1 0 0 unknown 1 0.500231623712815 1 0.999536752574369 hm5C_site_12078 DeepMRMD:1;iRNA_m5C:0.999536752574369 12079 chr12 6619522 6619522 1 + G C rs138128987 6619535 + 6619515 6619555 41 CCAACAAGAACTTTTTCCTACTTTTGAGCTACCTCTTTTTA CCAACAACAACTTTTTCCTACTTTTGAGCTACCTCTTTTTA < 41bp 1 0.0153335246426445 1 0.0228356719017029 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619535 chr12:6619522 . . 0 8 hm5C_associated_SNPs_9694 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12079 DeepMRMD:1;iRNA_m5C:0.999536712157815 12080 chr12 6619630 6619630 1 + A G rs141234350 6619642 + 6619622 6619662 41 GCATGTTCAGGGTATCAGGGCCAAGGGTCCTAAAGGACTTA GCATGTTCGGGGTATCAGGGCCAAGGGTCCTAAAGGACTTA < 41bp 1 0.126683358736989 1 0.280286192893982 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619642 chr12:6619630 . . 0 9 hm5C_associated_SNPs_9695 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12080 DeepMRMD:1;iRNA_m5C:0.999536712157815 12081 chr12 6619630 6619630 1 + A G rs141234350 6619643 + 6619623 6619663 41 CATGTTCAGGGTATCAGGGCCAAGGGTCCTAAAGGACTTAG CATGTTCGGGGTATCAGGGCCAAGGGTCCTAAAGGACTTAG < 41bp 1 0.591054060022223 1 0.740975439548492 experiment 0.817891879955555 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619643 chr12:6619630 . . 0 8 hm5C_associated_SNPs_9696 0 0 1 1 0 unknown 1 0.500231643921092 0.518049120903016 0.999536712157815 hm5C_site_12081 DeepMRMD:0.518049120903016;iRNA_m5C:0.999536712157815 12082 chr12 6635478 6635478 1 + C A rs73259178 6635482 + 6635462 6635502 41 GGCAAACGTCACCCCCCCTTCCGGCTGCCTCAGGAACACAG GGCAAACGTCACCCCCACTTCCGGCTGCCTCAGGAACACAG < 41bp 1 0.338954604069429 1 0.356241315603256 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6635482 chr12:6635478 nonsynonymous SNV 0.777 4 17 hm5C_associated_SNPs_9697 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12082 DeepMRMD:1;iRNA_m5C:0.999536712157815 12083 chr12 6640675 6640675 1 + T A rs571340759 6640693 + 6640673 6640713 41 TTTTTAAAAAAAAAAAAGGCCGGGCACTGTGGCTCACGCCT TTATTAAAAAAAAAAAAGGCCGGGCACTGTGGCTCACGCCT < 41bp 1 0.392497095899574 1 0.571279764175415 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 UTR3 Human protein_coding chr12:6640693 chr12:6640675 . . 0 3 hm5C_associated_SNPs_9698 0 0 1 0 0 Nucleus 1 0.500231721392362 0.85744047164917 0.999536557215277 hm5C_site_12083 DeepMRMD:0.85744047164917;iRNA_m5C:0.999536557215277 12084 chr12 6640676 6640676 1 + T A rs1043271 6640693 + 6640673 6640713 41 TTTTTAAAAAAAAAAAAGGCCGGGCACTGTGGCTCACGCCT TTTATAAAAAAAAAAAAGGCCGGGCACTGTGGCTCACGCCT < 41bp 1 0.444542237479341 1 0.58227264881134 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 UTR3 Human protein_coding chr12:6640693 chr12:6640676 . . 0 4 hm5C_associated_SNPs_9699 0 0 1 0 0 Nucleus 1 0.500231643975621 0.83545470237732 0.999536712048759 hm5C_site_12084 DeepMRMD:0.83545470237732;iRNA_m5C:0.999536712048759 12085 chr12 6640677 6640677 1 + T A rs1127198 6640693 + 6640673 6640713 41 TTTTTAAAAAAAAAAAAGGCCGGGCACTGTGGCTCACGCCT TTTTAAAAAAAAAAAAAGGCCGGGCACTGTGGCTCACGCCT < 41bp 1 0.474747136804655 1 0.600917339324951 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 UTR3 Human protein_coding chr12:6640693 chr12:6640677 . . 0 5 hm5C_associated_SNPs_9700 0 0 1 0 0 Nucleus 1 0.500231643993337 0.798165321350098 0.999536712013326 hm5C_site_12085 DeepMRMD:0.798165321350098;iRNA_m5C:0.999536712013326 12086 chr12 6640694 6640694 1 + G A rs148024858 6640693 + 6640673 6640713 41 TTTTTAAAAAAAAAAAAGGCCGGGCACTGTGGCTCACGCCT TTTTTAAAAAAAAAAAAGGCCAGGCACTGTGGCTCACGCCT < 41bp 1 0.406752063505753 1 0.446364879608154 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 UTR3 Human protein_coding chr12:6640693 chr12:6640694 . . 0 22 hm5C_associated_SNPs_9701 0 0 1 0 0 Nucleus 1 0.500231644452901 1 0.999536711094198 hm5C_site_12086 DeepMRMD:1;iRNA_m5C:0.999536711094198 12087 chr12 6640700 6640700 1 + T C rs556044417 6640693 + 6640673 6640713 41 TTTTTAAAAAAAAAAAAGGCCGGGCACTGTGGCTCACGCCT TTTTTAAAAAAAAAAAAGGCCGGGCACCGTGGCTCACGCCT < 41bp 1 0.47108787310895 1 0.515173196792603 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 UTR3 Human protein_coding chr12:6640693 chr12:6640700 . . 0 28 hm5C_associated_SNPs_9702 0 0 1 0 0 Nucleus 1 0.500231643927998 0.969653606414794 0.999536712144005 hm5C_site_12087 DeepMRMD:0.969653606414794;iRNA_m5C:0.999536712144005 12088 chr12 6643610 6643610 1 + G C rs112427350 6643628 + 6643608 6643648 41 GGGAGGCGGGGTCCGAGTCACCGCCTGCCGCCGCGCCCCCG GGCAGGCGGGGTCCGAGTCACCGCCTGCCGCCGCGCCCCCG < 41bp 1 0.48900378369159 1 0.499222755432129 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643628 chr12:6643610 . . 0 3 hm5C_associated_SNPs_9703 0 0 0 0 0 Ribosome 1 0.500231643804288 1 0.999536712391424 hm5C_site_12088 DeepMRMD:1;iRNA_m5C:0.999536712391424 12089 chr12 6643619 6643619 1 + T A rs111720901 6643628 + 6643608 6643648 41 GGGAGGCGGGGTCCGAGTCACCGCCTGCCGCCGCGCCCCCG GGGAGGCGGGGACCGAGTCACCGCCTGCCGCCGCGCCCCCG < 41bp 1 0.505067602550128 1 0.575212955474854 experiment 0.989864794899744 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643628 chr12:6643619 . . 0 12 hm5C_associated_SNPs_9704 0 0 0 0 0 Ribosome 1 0.500231637017403 0.849574089050292 0.999536725965194 hm5C_site_12089 DeepMRMD:0.849574089050292;iRNA_m5C:0.999536725965194 12090 chr12 6643619 6643619 1 + T A rs111720901 6643631 + 6643611 6643651 41 AGGCGGGGTCCGAGTCACCGCCTGCCGCCGCGCCCCCGGTT AGGCGGGGACCGAGTCACCGCCTGCCGCCGCGCCCCCGGTT < 41bp 1 0.197797437918583 1 0.599564731121063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643631 chr12:6643619 . . 0 9 hm5C_associated_SNPs_9705 0 0 0 0 0 Ribosome 1 0.500231634607262 0.800870537757874 0.999536730785477 hm5C_site_12090 DeepMRMD:0.800870537757874;iRNA_m5C:0.999536730785477 12091 chr12 6643619 6643619 1 + T A rs111720901 6643632 + 6643612 6643652 41 GGCGGGGTCCGAGTCACCGCCTGCCGCCGCGCCCCCGGTTT GGCGGGGACCGAGTCACCGCCTGCCGCCGCGCCCCCGGTTT < 41bp 1 0.487443802541578 1 0.59253054857254 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643632 chr12:6643619 . . 0 8 hm5C_associated_SNPs_9706 0 0 0 0 0 Ribosome 1 0.500236587988203 0.81493890285492 0.999526824023595 hm5C_site_12091 DeepMRMD:0.81493890285492;iRNA_m5C:0.999526824023595 12092 chr12 6643619 6643619 1 + T A rs111720901 6643635 + 6643615 6643655 41 GGGGTCCGAGTCACCGCCTGCCGCCGCGCCCCCGGTTTCTA GGGGACCGAGTCACCGCCTGCCGCCGCGCCCCCGGTTTCTA < 41bp 1 0.212777472589169 1 0.299212396144867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643635 chr12:6643619 . . 0 5 hm5C_associated_SNPs_9707 0 0 0 0 0 Ribosome 1 0.499487643495718 1 1 hm5C_site_12092 DeepMRMD:1;iRNA_m5C:1 12093 chr12 6643619 6643619 1 + T A rs111720901 6643636 + 6643616 6643656 41 GGGTCCGAGTCACCGCCTGCCGCCGCGCCCCCGGTTTCTAT GGGACCGAGTCACCGCCTGCCGCCGCGCCCCCGGTTTCTAT < 41bp 1 0.607088715065617 1 0.726504921913147 experiment 0.785822569868766 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643636 chr12:6643619 . . 0 4 hm5C_associated_SNPs_9708 0 0 0 0 0 Ribosome 1 0.500231628517071 0.546990156173706 0.999536742965857 hm5C_site_12093 DeepMRMD:0.546990156173706;iRNA_m5C:0.999536742965857 12094 chr12 6643619 6643619 1 + T A rs111720901 6643638 + 6643618 6643658 41 GTCCGAGTCACCGCCTGCCGCCGCGCCCCCGGTTTCTATAA GACCGAGTCACCGCCTGCCGCCGCGCCCCCGGTTTCTATAA < 41bp 1 0.452402738285053 1 0.178299278020859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643638 chr12:6643619 . . 0 2 hm5C_associated_SNPs_9709 0 0 0 0 0 Ribosome 1 0.500231643867543 1 0.999536712264915 hm5C_site_12094 DeepMRMD:1;iRNA_m5C:0.999536712264915 12095 chr12 6643619 6643619 1 + T A rs111720901 6643639 + 6643619 6643659 41 TCCGAGTCACCGCCTGCCGCCGCGCCCCCGGTTTCTATAAA ACCGAGTCACCGCCTGCCGCCGCGCCCCCGGTTTCTATAAA < 41bp 1 0.356794353738043 1 0.169039607048035 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643639 chr12:6643619 . . 0 1 hm5C_associated_SNPs_9710 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12095 DeepMRMD:1;iRNA_m5C:0.999536712157815 12096 chr12 6643703 6643703 1 + G A rs45568532 6643715 + 6643695 6643735 41 TCCTGTTCGACAGTCAGCCGCATCTTCTTTTGCGTCGCCAG TCCTGTTCAACAGTCAGCCGCATCTTCTTTTGCGTCGCCAG < 41bp 1 0.09703557965965 1 0.0631083250045776 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643715 chr12:6643703 . . 0 9 hm5C_associated_SNPs_9711 0 0 1 0 1 Ribosome 1 0.50023164375618 1 0.999536712487639 hm5C_site_12096 DeepMRMD:1;iRNA_m5C:0.999536712487639 12097 chr12 6643703 6643703 1 + G A rs45568532 6643718 + 6643698 6643738 41 TGTTCGACAGTCAGCCGCATCTTCTTTTGCGTCGCCAGGTG TGTTCAACAGTCAGCCGCATCTTCTTTTGCGTCGCCAGGTG < 41bp 1 0.219575875124446 1 0.109505116939545 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643718 chr12:6643703 . . 0 6 hm5C_associated_SNPs_9712 0 0 1 0 1 Ribosome 1 0.500231641667652 1 0.999536716664697 hm5C_site_12097 DeepMRMD:1;iRNA_m5C:0.999536716664697 12098 chr12 6643713 6643713 1 + C T rs367946267 6643715 + 6643695 6643735 41 TCCTGTTCGACAGTCAGCCGCATCTTCTTTTGCGTCGCCAG TCCTGTTCGACAGTCAGCTGCATCTTCTTTTGCGTCGCCAG < 41bp 1 0.10890058205923 1 0.0469537079334259 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643715 chr12:6643713 . . 0 19 hm5C_associated_SNPs_9713 0 0 1 0 1 Ribosome 1 0.500231642988564 1 0.999536714022873 hm5C_site_12098 DeepMRMD:1;iRNA_m5C:0.999536714022873 12099 chr12 6643713 6643713 1 + C T rs367946267 6643718 + 6643698 6643738 41 TGTTCGACAGTCAGCCGCATCTTCTTTTGCGTCGCCAGGTG TGTTCGACAGTCAGCTGCATCTTCTTTTGCGTCGCCAGGTG < 41bp 1 0.251241825679055 1 0.147297352552414 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GAPDH ENSG00000111640 UTR5 Human protein_coding chr12:6643718 chr12:6643713 . . 0 16 hm5C_associated_SNPs_9714 0 0 1 0 1 Ribosome 1 0.500231673222178 1 0.999536653555644 hm5C_site_12099 DeepMRMD:1;iRNA_m5C:0.999536653555644 12100 chr12 6647393 6647393 1 + G A rs138263904 6647404 + 6647384 6647424 41 ACCCTCACTGCTGGGGAGTCCCTGCCACACTCAGTCCCCCA ACCCTCACTACTGGGGAGTCCCTGCCACACTCAGTCCCCCA < 41bp 1 0.212687114789555 1 0.0650769174098969 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647404 chr12:6647393 . . 0 10 hm5C_associated_SNPs_9715 0 0 1 0 0 Ribosome 1 0.500231643915756 1 0.999536712168488 hm5C_site_12100 DeepMRMD:1;iRNA_m5C:0.999536712168488 12101 chr12 6647429 6647429 1 + A C rs561929037 6647439 + 6647419 6647459 41 CCCCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGT CCCCCACCACCCTGAATCTCCCCTCCTCACAGTTGCCATGT < 41bp 1 0.129003168495939 1 0.04429030418396 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647439 chr12:6647429 . . 0 11 hm5C_associated_SNPs_9716 0 0 1 0 0 Ribosome 1 0.500231643337845 1 0.999536713324309 hm5C_site_12101 DeepMRMD:1;iRNA_m5C:0.999536713324309 12102 chr12 6647429 6647429 1 + A C rs561929037 6647440 + 6647420 6647460 41 CCCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGTA CCCCACCACCCTGAATCTCCCCTCCTCACAGTTGCCATGTA < 41bp 1 0.0940935189602911 1 0.107676178216934 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647440 chr12:6647429 . . 0 10 hm5C_associated_SNPs_9717 0 0 1 0 0 Ribosome 1 0.500231643921759 1 0.999536712156481 hm5C_site_12102 DeepMRMD:1;iRNA_m5C:0.999536712156481 12103 chr12 6647429 6647429 1 + A C rs561929037 6647441 + 6647421 6647461 41 CCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGTAG CCCACCACCCTGAATCTCCCCTCCTCACAGTTGCCATGTAG < 41bp 1 0.389082821744426 1 0.198810935020447 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647441 chr12:6647429 . . 0 9 hm5C_associated_SNPs_9718 0 0 1 0 0 Ribosome 1 0.500231619113044 1 0.999536761773911 hm5C_site_12103 DeepMRMD:1;iRNA_m5C:0.999536761773911 12104 chr12 6647429 6647429 1 + A C rs561929037 6647448 + 6647428 6647468 41 CACTGAATCTCCCCTCCTCACAGTTGCCATGTAGACCCCTT CCCTGAATCTCCCCTCCTCACAGTTGCCATGTAGACCCCTT < 41bp 1 0.67169803677373 1 0.0602639615535736 experiment 0.65660392645254 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647448 chr12:6647429 . . 0 2 hm5C_associated_SNPs_9719 0 0 1 0 0 Ribosome 1 0.500231643935028 1 0.999536712129944 hm5C_site_12104 DeepMRMD:1;iRNA_m5C:0.999536712129944 12105 chr12 6647448 6647448 1 + C A rs141846451 6647439 + 6647419 6647459 41 CCCCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGT CCCCCACCACACTGAATCTCCCCTCCTCAAAGTTGCCATGT < 41bp 1 0.127289219414528 1 0.0563882887363434 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647439 chr12:6647448 . . 0 30 hm5C_associated_SNPs_9720 0 0 1 0 0 Ribosome 1 0.500231644127711 1 0.999536711744578 hm5C_site_12105 DeepMRMD:1;iRNA_m5C:0.999536711744578 12106 chr12 6647448 6647448 1 + C A rs141846451 6647440 + 6647420 6647460 41 CCCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGTA CCCCACCACACTGAATCTCCCCTCCTCAAAGTTGCCATGTA < 41bp 1 0.0924072169900614 1 0.0702826082706451 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647440 chr12:6647448 . . 0 29 hm5C_associated_SNPs_9721 0 0 1 0 0 Ribosome 1 0.500231643921087 1 0.999536712157826 hm5C_site_12106 DeepMRMD:1;iRNA_m5C:0.999536712157826 12107 chr12 6647448 6647448 1 + C A rs141846451 6647441 + 6647421 6647461 41 CCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGTAG CCCACCACACTGAATCTCCCCTCCTCAAAGTTGCCATGTAG < 41bp 1 0.383161131479058 1 0.173025637865067 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647441 chr12:6647448 . . 0 28 hm5C_associated_SNPs_9722 0 0 1 0 0 Ribosome 1 0.500231643848108 1 0.999536712303785 hm5C_site_12107 DeepMRMD:1;iRNA_m5C:0.999536712303785 12108 chr12 6647448 6647448 1 + C A rs141846451 6647454 + 6647434 6647474 41 ATCTCCCCTCCTCACAGTTGCCATGTAGACCCCTTGAAGAG ATCTCCCCTCCTCAAAGTTGCCATGTAGACCCCTTGAAGAG < 41bp 1 0.255050011091089 1 0.0488801300525665 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647454 chr12:6647448 . . 0 15 hm5C_associated_SNPs_9723 0 0 1 0 0 Ribosome 1 0.500231643828985 1 0.999536712342029 hm5C_site_12108 DeepMRMD:1;iRNA_m5C:0.999536712342029 12109 chr12 6647448 6647448 1 + C A rs141846451 6647463 + 6647443 6647483 41 CCTCACAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGC CCTCAAAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGC < 41bp 1 0.606634654091093 1 0.114551186561584 experiment 0.786730691817814 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647463 chr12:6647448 . . 0 6 hm5C_associated_SNPs_9724 0 0 1 0 0 Ribosome 1 0.500231643921065 1 0.99953671215787 hm5C_site_12109 DeepMRMD:1;iRNA_m5C:0.99953671215787 12110 chr12 6647448 6647448 1 + C A rs141846451 6647464 + 6647444 6647484 41 CTCACAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGCC CTCAAAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGCC < 41bp 1 0.219564450985268 1 0.13112485408783 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647464 chr12:6647448 . . 0 5 hm5C_associated_SNPs_9725 0 0 1 0 0 Ribosome 1 0.500231643921107 1 0.999536712157785 hm5C_site_12110 DeepMRMD:1;iRNA_m5C:0.999536712157785 12111 chr12 6647448 6647448 1 + C A rs141846451 6647465 + 6647445 6647485 41 TCACAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGCCT TCAAAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGCCT < 41bp 1 0.178448355869507 1 0.0872215628623962 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647465 chr12:6647448 . . 0 4 hm5C_associated_SNPs_9726 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_12111 DeepMRMD:1;iRNA_m5C:0.999536712157818 12112 chr12 6647453 6647453 1 + G T rs1803622 6647439 + 6647419 6647459 41 CCCCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGT CCCCCACCACACTGAATCTCCCCTCCTCACAGTTTCCATGT < 41bp 1 0.14535434817064 1 0.0560798048973083 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647439 chr12:6647453 . . 0 35 hm5C_associated_SNPs_9728 0 0 1 0 0 Ribosome 1 0.500231646134086 1 0.999536707731829 hm5C_site_12112 DeepMRMD:1;iRNA_m5C:0.999536707731829 12113 chr12 6647453 6647453 1 + G T rs1803622 6647440 + 6647420 6647460 41 CCCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGTA CCCCACCACACTGAATCTCCCCTCCTCACAGTTTCCATGTA < 41bp 1 0.0905828764921921 1 0.0926620960235596 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647440 chr12:6647453 . . 0 34 hm5C_associated_SNPs_9729 0 0 1 0 0 Ribosome 1 0.500231643949617 1 0.999536712100765 hm5C_site_12113 DeepMRMD:1;iRNA_m5C:0.999536712100765 12114 chr12 6647453 6647453 1 + G T rs1803622 6647441 + 6647421 6647461 41 CCCACCACACTGAATCTCCCCTCCTCACAGTTGCCATGTAG CCCACCACACTGAATCTCCCCTCCTCACAGTTTCCATGTAG < 41bp 1 0.407009392509919 1 0.234256714582443 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647441 chr12:6647453 . . 0 33 hm5C_associated_SNPs_9730 0 0 1 0 0 Ribosome 1 0.500231644223773 1 0.999536711552453 hm5C_site_12114 DeepMRMD:1;iRNA_m5C:0.999536711552453 12115 chr12 6647453 6647453 1 + G T rs1803622 6647448 + 6647428 6647468 41 CACTGAATCTCCCCTCCTCACAGTTGCCATGTAGACCCCTT CACTGAATCTCCCCTCCTCACAGTTTCCATGTAGACCCCTT < 41bp 1 0.568779894738132 1 0.0611736476421356 experiment 0.862440210523736 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647448 chr12:6647453 . . 0 26 hm5C_associated_SNPs_9731 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12115 DeepMRMD:1;iRNA_m5C:0.999536712157815 12116 chr12 6647453 6647453 1 + G T rs1803622 6647454 + 6647434 6647474 41 ATCTCCCCTCCTCACAGTTGCCATGTAGACCCCTTGAAGAG ATCTCCCCTCCTCACAGTTTCCATGTAGACCCCTTGAAGAG < 41bp 1 0.30602204699199 1 0.131010264158249 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647454 chr12:6647453 . . 0 20 hm5C_associated_SNPs_9732 0 0 1 0 0 Ribosome 1 0.500231643921261 1 0.999536712157478 hm5C_site_12116 DeepMRMD:1;iRNA_m5C:0.999536712157478 12117 chr12 6647453 6647453 1 + G T rs1803622 6647463 + 6647443 6647483 41 CCTCACAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGC CCTCACAGTTTCCATGTAGACCCCTTGAAGAGGGGAGGGGC < 41bp 1 0.553202462357509 1 0.101982951164246 experiment 0.893595075284981 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647463 chr12:6647453 . . 0 11 hm5C_associated_SNPs_9733 0 0 1 0 0 Ribosome 1 0.500231643804576 1 0.999536712390849 hm5C_site_12117 DeepMRMD:1;iRNA_m5C:0.999536712390849 12118 chr12 6647453 6647453 1 + G T rs1803622 6647464 + 6647444 6647484 41 CTCACAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGCC CTCACAGTTTCCATGTAGACCCCTTGAAGAGGGGAGGGGCC < 41bp 1 0.187674599274281 1 0.0821937024593353 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647464 chr12:6647453 . . 0 10 hm5C_associated_SNPs_9734 0 0 1 0 0 Ribosome 1 0.500231644460405 1 0.99953671107919 hm5C_site_12118 DeepMRMD:1;iRNA_m5C:0.99953671107919 12119 chr12 6647453 6647453 1 + G T rs1803622 6647465 + 6647445 6647485 41 TCACAGTTGCCATGTAGACCCCTTGAAGAGGGGAGGGGCCT TCACAGTTTCCATGTAGACCCCTTGAAGAGGGGAGGGGCCT < 41bp 1 0.153669507171669 1 0.0579120218753815 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647465 chr12:6647453 . . 0 9 hm5C_associated_SNPs_9735 0 0 1 0 0 Ribosome 1 0.500231638661494 1 0.999536722677011 hm5C_site_12119 DeepMRMD:1;iRNA_m5C:0.999536722677011 12120 chr12 6647516 6647516 1 + T G rs552128740 6647536 + 6647516 6647556 41 TAAAGTACCCTGTGCTCAACCAGTTACTTGTCCTGTCTTAT GAAAGTACCCTGTGCTCAACCAGTTACTTGTCCTGTCTTAT < 41bp 1 0.281043781397402 1 0.134436339139938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647536 chr12:6647516 . . 0 1 hm5C_associated_SNPs_9737 0 0 1 1 0 Ribosome 1 0.500231643820034 1 0.999536712359932 hm5C_site_12120 DeepMRMD:1;iRNA_m5C:0.999536712359932 12121 chr12 6939926 6939926 1 + A T rs782426975 6939910 + 6939890 6939930 41 TCCTTCCCAACCAGCTGAGGCGGCTACATGAGGCCCATGCT TCCTTCCCAACCAGCTGAGGCGGCTACATGAGGCCCTTGCT < 41bp 1 0.229247989810114 1 0.74679559469223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6939910 chr12:6939926 nonsynonymous SNV 0.854 0 37 hm5C_associated_SNPs_9738 0 0 0 0 0 membrane 1 0.500231643921092 0.50640881061554 0.999536712157815 hm5C_site_12121 DeepMRMD:0.50640881061554;iRNA_m5C:0.999536712157815 12122 chr12 6969625 6969625 1 + G A rs79451772 6969628 + 6969608 6969648 41 CAGCAGGATGCCCAGGAGTTCTTCCTTCACCTTATCAACAT CAGCAGGATGCCCAGGAATTCTTCCTTCACCTTATCAACAT < 41bp 1 0.295524587005062 1 0.0689154863357544 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6969628 chr12:6969625 synonymous SNV . 0 18 hm5C_associated_SNPs_9739 0 0 1 0 2 Nucleus 1 0.500231643921083 1 0.999536712157833 hm5C_site_12122 DeepMRMD:1;iRNA_m5C:0.999536712157833 12123 chr12 6976688 6976688 1 + A G rs1800200 6976702 + 6976682 6976722 41 GCCGCGACTGCGCGCAGACACTGACCTTCAGCGCCTCGGCT GCCGCGGCTGCGCGCAGACACTGACCTTCAGCGCCTCGGCT < 41bp 1 0.482070242448973 1 0.0379800796508789 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6976702 chr12:6976688 synonymous SNV . 0 7 hm5C_associated_SNPs_9740 1 0 1 0 0 Ribosome 1 0.500231765987162 1 0.999536468025676 hm5C_site_12123 DeepMRMD:1;iRNA_m5C:0.999536468025676 Triosephosphate isomerase deficiency Triosephosphate isomerase deficiency 12124 chr12 6976714 6976714 1 + G C rs782758079 6976702 + 6976682 6976722 41 GCCGCGACTGCGCGCAGACACTGACCTTCAGCGCCTCGGCT GCCGCGACTGCGCGCAGACACTGACCTTCAGCCCCTCGGCT < 41bp 1 0.537459942280277 1 0.0607783198356628 experiment 0.925080115439445 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6976702 chr12:6976714 nonsynonymous SNV 0.117 0 33 hm5C_associated_SNPs_9741 0 0 1 0 0 Ribosome 1 0.500231644001574 1 0.999536711996851 hm5C_site_12124 DeepMRMD:1;iRNA_m5C:0.999536711996851 12125 chr12 6978344 6978344 1 + T C rs141972556 6978340 + 6978320 6978360 41 AAGGCATGTCTTTGGGGAGTCAGATGAGGTTAGTAGCCAAG AAGGCATGTCTTTGGGGAGTCAGACGAGGTTAGTAGCCAAG < 41bp 1 0.332205598667371 1 0.538480579853058 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TPI1 ENSG00000111669 CDS Human protein_coding chr12:6978340 chr12:6978344 synonymous SNV . 0 25 hm5C_associated_SNPs_9742 1 0 1 0 2 Ribosome 1 0.500231643922063 0.923038840293884 0.999536712155874 hm5C_site_12125 DeepMRMD:0.923038840293884;iRNA_m5C:0.999536712155874 Triosephosphate isomerase deficiency Triosephosphate isomerase deficiency 12126 chr12 6979935 6979935 1 + C T rs540279409 6979919 + 6979899 6979939 41 TCAGAAGGCAGGAGTGCTGCCCTCTCCCATGGTGCCCGTGC TCAGAAGGCAGGAGTGCTGCCCTCTCCCATGGTGCCTGTGC < 41bp 1 0.154473098942695 1 0.0567590594291687 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPI1 ENSG00000111669 UTR3 Human protein_coding chr12:6979919 chr12:6979935 . . 0 37 hm5C_associated_SNPs_9743 0 0 1 1 0 Ribosome 1 0.500231641026638 1 0.999536717946725 hm5C_site_12126 DeepMRMD:1;iRNA_m5C:0.999536717946725 12127 chr12 6979935 6979935 1 + C T rs540279409 6979922 + 6979902 6979942 41 GAAGGCAGGAGTGCTGCCCTCTCCCATGGTGCCCGTGCCTC GAAGGCAGGAGTGCTGCCCTCTCCCATGGTGCCTGTGCCTC < 41bp 1 0.586938580730958 1 0.849968194961548 experiment 0.826122838538084 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TPI1 ENSG00000111669 UTR3 Human protein_coding chr12:6979922 chr12:6979935 . . 0 34 hm5C_associated_SNPs_9744 0 0 1 1 0 Ribosome 1 0.500231643921204 0.300063610076904 0.999536712157591 hm5C_site_12127 DeepMRMD:0.300063610076904;iRNA_m5C:0.999536712157591 12128 chr12 7037504 7037504 1 + G A rs193192226 7037484 + 7037464 7037504 41 GGGGAGCTGCCGCCGCCGCCCCCCAGAGGCGCCGGAGCCCG GGGGAGCTGCCGCCGCCGCCCCCCAGAGGCGCCGGAGCCCA < 41bp 1 0.670696053569943 1 0.347865343093872 experiment 0.658607892860115 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATN1 ENSG00000111676 UTR5 Human protein_coding chr12:7037484 chr12:7037504 . . 0 41 hm5C_associated_SNPs_9747 0 0 1 0 1 Endoplasmic reticulum 1 0.500263966782234 1 0.999472066435533 hm5C_site_12128 DeepMRMD:1;iRNA_m5C:0.999472066435533 12129 chr12 7037504 7037504 1 + G A rs193192226 7037485 + 7037465 7037505 41 GGGAGCTGCCGCCGCCGCCCCCCAGAGGCGCCGGAGCCCGG GGGAGCTGCCGCCGCCGCCCCCCAGAGGCGCCGGAGCCCAG < 41bp 1 0.374531600295591 1 0.518835425376892 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATN1 ENSG00000111676 UTR5 Human protein_coding chr12:7037485 chr12:7037504 . . 0 40 hm5C_associated_SNPs_9748 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643894834 0.962329149246216 0.999536712210331 hm5C_site_12129 DeepMRMD:0.962329149246216;iRNA_m5C:0.999536712210331 12130 chr12 7053198 7053198 1 + A G rs141260691 7053212 + 7053192 7053232 41 GCTCCCAGGGGCGTTGGGAACGGTTGTAGGACGTGGCTCTT GCTCCCGGGGGCGTTGGGAACGGTTGTAGGACGTGGCTCTT < 41bp 1 0.578449588536369 1 0.748106062412262 experiment 0.843100822927262 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control C12orf57 ENSG00000272173 ncRNA_exonic Human antisense chr12:7053212 chr12:7053198 . . 0 7 hm5C_associated_SNPs_9751 0 0 1 0 0 Ribosome 1 0.500231643921095 0.503787875175476 0.999536712157809 hm5C_site_12130 DeepMRMD:0.503787875175476;iRNA_m5C:0.999536712157809 12131 chr12 7080186 7080186 1 + G A rs782495453 7080174 + 7080154 7080194 41 ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAAC ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGACAGGAAAC < 41bp 1 0.197325979726094 1 0.0570454299449921 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080174 chr12:7080186 nonsynonymous SNV 0.904 0 33 hm5C_associated_SNPs_9752 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12131 DeepMRMD:1;iRNA_m5C:0.999536712157815 12132 chr12 7080186 7080186 1 + G A rs782495453 7080176 + 7080156 7080196 41 GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA GCTCTGCCACCCAAGCGGCCCCGACTAGGGACAGGAAACAA < 41bp 1 0.21258654314507 1 0.0555065870285034 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080176 chr12:7080186 nonsynonymous SNV 0.904 0 31 hm5C_associated_SNPs_9753 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12132 DeepMRMD:1;iRNA_m5C:0.999536712157815 12133 chr12 7080186 7080186 1 + G A rs782495453 7080177 + 7080157 7080197 41 CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG CTCTGCCACCCAAGCGGCCCCGACTAGGGACAGGAAACAAG < 41bp 1 0.364735286125283 1 0.0719850063323975 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080177 chr12:7080186 nonsynonymous SNV 0.904 0 30 hm5C_associated_SNPs_9754 0 0 1 0 1 Cytosol 1 0.500231643930739 1 0.999536712138521 hm5C_site_12133 DeepMRMD:1;iRNA_m5C:0.999536712138521 12134 chr12 7080187 7080187 1 + C G rs11064480 7080174 + 7080154 7080194 41 ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAAC ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGGGAGGAAAC < 41bp 1 0.1830487406523 1 0.0509169101715088 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080174 chr12:7080187 nonsynonymous SNV 0.934 0 34 hm5C_associated_SNPs_9755 1 0 1 0 1 Cytosol 1 0.500231643921215 1 0.99953671215757 hm5C_site_12134 DeepMRMD:1;iRNA_m5C:0.99953671215757 not specified not specified 12135 chr12 7080187 7080187 1 + C G rs11064480 7080176 + 7080156 7080196 41 GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA GCTCTGCCACCCAAGCGGCCCCGACTAGGGGGAGGAAACAA < 41bp 1 0.189456459967908 1 0.0607316792011261 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080176 chr12:7080187 nonsynonymous SNV 0.934 0 32 hm5C_associated_SNPs_9756 1 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12135 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 12136 chr12 7080187 7080187 1 + C G rs11064480 7080177 + 7080157 7080197 41 CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG CTCTGCCACCCAAGCGGCCCCGACTAGGGGGAGGAAACAAG < 41bp 1 0.357877273587568 1 0.114770323038101 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080177 chr12:7080187 nonsynonymous SNV 0.934 0 31 hm5C_associated_SNPs_9757 1 0 1 0 1 Cytosol 1 0.500231645262667 1 0.999536709474667 hm5C_site_12136 DeepMRMD:1;iRNA_m5C:0.999536709474667 not specified not specified 12137 chr12 7177214 7177214 1 + C T rs148573885 7177213 + 7177193 7177233 41 ACAGAGGATAATTGGAGGATCCGATGCAGATATTAAAAACT ACAGAGGATAATTGGAGGATCTGATGCAGATATTAAAAACT < 41bp 1 0.23708204112683 1 0.175717711448669 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C1S ENSG00000182326 CDS Human protein_coding chr12:7177213 chr12:7177214 synonymous SNV . 0 22 hm5C_associated_SNPs_9758 0 0 0 0 1 Nucleus 1 0.500231641835645 1 0.999536716328711 hm5C_site_12137 DeepMRMD:1;iRNA_m5C:0.999536716328711 12138 chr12 7342619 7342619 1 + G T rs117442311 7342623 + 7342603 7342643 41 CCCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGTTGTTGAA CCCTTCTTCGGGCAGTTTCGCCGTCCAGCCTGGTTGTTGAA < 41bp 1 0.0866713113051408 1 0.42214697599411 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX5 ENSG00000139197 UTR5 Human protein_coding chr12:7342623 chr12:7342619 . . 0 17 hm5C_associated_SNPs_9759 1 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12138 DeepMRMD:1;iRNA_m5C:0.999536712157815 Zellweger syndrome Zellweger syndrome 12139 chr12 7342619 7342619 1 + G T rs117442311 7342624 + 7342604 7342644 41 CCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGTTGTTGAAG CCTTCTTCGGGCAGTTTCGCCGTCCAGCCTGGTTGTTGAAG < 41bp 1 0.114130354326919 1 0.167798787355423 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX5 ENSG00000139197 UTR5 Human protein_coding chr12:7342624 chr12:7342619 . . 0 16 hm5C_associated_SNPs_9760 1 0 1 0 1 Ribosome 1 0.500231643921096 1 0.999536712157809 hm5C_site_12139 DeepMRMD:1;iRNA_m5C:0.999536712157809 Zellweger syndrome Zellweger syndrome 12140 chr12 7342636 7342636 1 + T A rs113752912 7342623 + 7342603 7342643 41 CCCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGTTGTTGAA CCCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGATGTTGAA < 41bp 1 0.0686280957484024 1 0.293141782283783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX5 ENSG00000139197 UTR5 Human protein_coding chr12:7342623 chr12:7342636 . . 0 34 hm5C_associated_SNPs_9761 1 0 1 0 1 Ribosome 1 0.500231643907864 1 0.999536712184271 hm5C_site_12140 DeepMRMD:1;iRNA_m5C:0.999536712184271 Zellweger syndrome Zellweger syndrome 12141 chr12 7342636 7342636 1 + T A rs113752912 7342624 + 7342604 7342644 41 CCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGTTGTTGAAG CCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGATGTTGAAG < 41bp 1 0.120639191774718 1 0.119431734085083 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX5 ENSG00000139197 UTR5 Human protein_coding chr12:7342624 chr12:7342636 . . 0 33 hm5C_associated_SNPs_9762 1 0 1 0 1 Ribosome 1 0.500231643582605 1 0.999536712834791 hm5C_site_12141 DeepMRMD:1;iRNA_m5C:0.999536712834791 Zellweger syndrome Zellweger syndrome 12142 chr12 8234872 8234872 1 + C G rs115269413 8234880 + 8234860 8234900 41 CGGCAGCGCCGACAGCGGACCCAAGATGGCGACCGAGTTGG CGGCAGCGCCGAGAGCGGACCCAAGATGGCGACCGAGTTGG < 41bp 1 0.55437344228783 1 0.122934520244598 experiment 0.891253115424341 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NECAP1 ENSG00000089818 UTR5 Human protein_coding chr12:8234880 chr12:8234872 . . 0 13 hm5C_associated_SNPs_9763 0 0 1 0 0 Ribosome 1 0.500231641562953 1 0.999536716874094 hm5C_site_12142 DeepMRMD:1;iRNA_m5C:0.999536716874094 12143 chr12 13028696 13028696 1 + G A rs11055120 13028713 + 13028693 13028733 41 GCCGCCCCACAAGACCAAGCCAGGCCAGGCCGCTCTGGACT GCCACCCCACAAGACCAAGCCAGGCCAGGCCGCTCTGGACT < 41bp 1 0.65421650653068 1 0.296637415885925 experiment 0.691566986938641 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13AP20 ENSG00000234498 ncRNA_exonic Human processed_pseudogene chr12:13028713 chr12:13028696 . . 0 4 hm5C_associated_SNPs_9764 0 0 0 0 0 unknown 1 0.500231643934656 1 0.999536712130688 hm5C_site_12143 DeepMRMD:1;iRNA_m5C:0.999536712130688 12144 chr12 13156611 13156611 1 + C T rs117652018 13156603 + 13156583 13156623 41 TTCACAAGGGTGCAGTGGGGCCATGGACCATCCCATGGGAT TTCACAAGGGTGCAGTGGGGCCATGGACTATCCCATGGGAT < 41bp 1 0.0835719967402014 1 0.32948637008667 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTR7P1 ENSG00000255621 ncRNA_intronic Human lincRNA chr12:13156603 chr12:13156611 . . 0 29 hm5C_associated_SNPs_9765 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12144 DeepMRMD:1;iRNA_m5C:0.999536712157815 12145 chr12 16053933 16053933 1 + A G rs74063293 16053943 + 16053923 16053963 41 CAGAGACAACAGAAGAGGAGCTAGGTAAATGCTATGGAATT CAGAGACAACGGAAGAGGAGCTAGGTAAATGCTATGGAATT < 41bp 1 0.481689718535292 1 0.447614103555679 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control STRAP ENSG00000023734 CDS Human protein_coding chr12:16053943 chr12:16053933 synonymous SNV . 0 11 hm5C_associated_SNPs_9766 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12145 DeepMRMD:1;iRNA_m5C:0.999536712157815 12146 chr12 16517110 16517110 1 + T C rs4149206 16517098 + 16517078 16517118 41 AATTATGAACTGGGGTAAACCCATTTTGAATATTAGCATTG AATTATGAACTGGGGTAAACCCATTTTGAATACTAGCATTG < 41bp 1 0.0701005228764093 1 0.360411882400513 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGST1 ENSG00000008394 UTR3 Human protein_coding chr12:16517098 chr12:16517110 . . 0 33 hm5C_associated_SNPs_9767 0 0 1 3 0 Endoplasmic reticulum 1 0.500231643921563 1 0.999536712156875 hm5C_site_12146 DeepMRMD:1;iRNA_m5C:0.999536712156875 12147 chr12 19427807 19427807 1 + G A rs142030429 19427793 + 19427773 19427813 41 CAGATCTTAGAGGTGGAAATCGCCCCAATACAGGGCCCTTA CAGATCTTAGAGGTGGAAATCGCCCCAATACAGGACCCTTA < 41bp 1 0.395854720741162 1 0.40583348274231 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHA5 ENSG00000052126 CDS Human protein_coding chr12:19427793 chr12:19427807 synonymous SNV . 0 35 hm5C_associated_SNPs_9768 0 0 1 0 0 Nucleus 1 0.500231643921014 1 0.999536712157973 hm5C_site_12147 DeepMRMD:1;iRNA_m5C:0.999536712157973 12148 chr12 27731113 27731113 1 + G A rs114441949 27731104 + 27731084 27731124 41 GTATAAAAGAACGTGTGGATCACTTTGCTGAGTACATCCAA GTATAAAAGAACGTGTGGATCACTTTGCTAAGTACATCCAA < 41bp 1 0.248770895031941 1 0.0729583203792572 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIBP1 ENSG00000110841 UTR5 Human protein_coding chr12:27731104 chr12:27731113 . . 0 30 hm5C_associated_SNPs_9770 0 0 0 0 2 Nucleus 1 0.500231643921119 1 0.999536712157762 hm5C_site_12148 DeepMRMD:1;iRNA_m5C:0.999536712157762 12149 chr12 27788021 27788021 1 + G A rs2075378 27788020 + 27788000 27788040 41 CCCAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCAGA CCCAGATTCAACAGCAGAAACACTTGTTGAATGGCTTCAGA < 41bp 1 0.295184264277323 1 0.130691111087799 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27788020 chr12:27788021 synonymous SNV . 0 22 hm5C_associated_SNPs_9771 0 0 1 0 1 Nucleus 1 0.500231644566794 1 0.999536710866411 hm5C_site_12149 DeepMRMD:1;iRNA_m5C:0.999536710866411 12150 chr12 27848301 27848301 1 + C G rs143674494 27848308 + 27848288 27848328 41 CGTGAATCGCCCCCCTCGGTCTCCCAAAGTGCTGGGATTAC CGTGAATCGCCCCGCTCGGTCTCCCAAAGTGCTGGGATTAC < 41bp 1 0.422669217957372 1 0.0419786870479584 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPFIBP1 ENSG00000110841 UTR3 Human protein_coding chr12:27848308 chr12:27848301 . . 0 14 hm5C_associated_SNPs_9772 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12150 DeepMRMD:1;iRNA_m5C:0.999536712157815 12151 chr12 27848301 27848301 1 + C G rs143674494 27848310 + 27848290 27848330 41 TGAATCGCCCCCCTCGGTCTCCCAAAGTGCTGGGATTACAG TGAATCGCCCCGCTCGGTCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.425680832567565 1 0.0949421226978302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPFIBP1 ENSG00000110841 UTR3 Human protein_coding chr12:27848310 chr12:27848301 . . 0 12 hm5C_associated_SNPs_9773 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12151 DeepMRMD:1;iRNA_m5C:0.999536712157815 12152 chr12 27848301 27848301 1 + C G rs143674494 27848311 + 27848291 27848331 41 GAATCGCCCCCCTCGGTCTCCCAAAGTGCTGGGATTACAGG GAATCGCCCCGCTCGGTCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.40959680763711 1 0.284911751747131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPFIBP1 ENSG00000110841 UTR3 Human protein_coding chr12:27848311 chr12:27848301 . . 0 11 hm5C_associated_SNPs_9774 0 0 0 0 0 Nucleus 1 0.500231642574723 1 0.999536714850554 hm5C_site_12152 DeepMRMD:1;iRNA_m5C:0.999536714850554 12153 chr12 27848301 27848301 1 + C G rs143674494 27848312 + 27848292 27848332 41 AATCGCCCCCCTCGGTCTCCCAAAGTGCTGGGATTACAGGC AATCGCCCCGCTCGGTCTCCCAAAGTGCTGGGATTACAGGC < 41bp 1 0.639271300800659 1 0.799171328544617 experiment 0.721457398398682 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPFIBP1 ENSG00000110841 UTR3 Human protein_coding chr12:27848312 chr12:27848301 . . 0 10 hm5C_associated_SNPs_9775 0 0 0 0 0 Nucleus 1 0.500231643921092 0.401657342910766 0.999536712157815 hm5C_site_12153 DeepMRMD:0.401657342910766;iRNA_m5C:0.999536712157815 12154 chr12 27848343 27848343 1 + A G rs144049521 27848338 + 27848318 27848358 41 GCTGGGATTACAGGCGTGAGCCACCATGCCCGGCCCAAATA GCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCCAAATA < 41bp 1 0.513757390602102 1 0.303757965564728 experiment 0.972485218795795 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPFIBP1 ENSG00000110841 UTR3 Human protein_coding chr12:27848338 chr12:27848343 . . 0 26 hm5C_associated_SNPs_9777 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12154 DeepMRMD:1;iRNA_m5C:0.999536712157815 12155 chr12 27848343 27848343 1 + A G rs144049521 27848341 + 27848321 27848361 41 GGGATTACAGGCGTGAGCCACCATGCCCGGCCCAAATATTT GGGATTACAGGCGTGAGCCACCGTGCCCGGCCCAAATATTT < 41bp 1 0.237699905028222 1 0.387638300657272 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPFIBP1 ENSG00000110841 UTR3 Human protein_coding chr12:27848341 chr12:27848343 . . 0 23 hm5C_associated_SNPs_9779 0 0 0 0 0 Nucleus 1 0.50023164393375 1 0.999536712132499 hm5C_site_12155 DeepMRMD:1;iRNA_m5C:0.999536712132499 12156 chr12 27848343 27848343 1 + A G rs144049521 27848342 + 27848322 27848362 41 GGATTACAGGCGTGAGCCACCATGCCCGGCCCAAATATTTT GGATTACAGGCGTGAGCCACCGTGCCCGGCCCAAATATTTT < 41bp 1 0.265179559106755 1 0.645634412765503 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPFIBP1 ENSG00000110841 UTR3 Human protein_coding chr12:27848342 chr12:27848343 . . 0 22 hm5C_associated_SNPs_9780 0 0 0 0 0 Nucleus 1 0.500231643921092 0.708731174468994 0.999536712157815 hm5C_site_12156 DeepMRMD:0.708731174468994;iRNA_m5C:0.999536712157815 12157 chr12 27848344 27848344 1 + T C rs146907125 27848338 + 27848318 27848358 41 GCTGGGATTACAGGCGTGAGCCACCATGCCCGGCCCAAATA GCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCCAAATA < 41bp 1 0.414639489178584 1 0.445415169000626 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPFIBP1 ENSG00000110841 UTR3 Human protein_coding chr12:27848338 chr12:27848344 . . 0 27 hm5C_associated_SNPs_9782 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12157 DeepMRMD:1;iRNA_m5C:0.999536712157815 12158 chr12 27848344 27848344 1 + T C rs146907125 27848341 + 27848321 27848361 41 GGGATTACAGGCGTGAGCCACCATGCCCGGCCCAAATATTT GGGATTACAGGCGTGAGCCACCACGCCCGGCCCAAATATTT < 41bp 1 0.286084515558965 1 0.220323264598846 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPFIBP1 ENSG00000110841 UTR3 Human protein_coding chr12:27848341 chr12:27848344 . . 0 24 hm5C_associated_SNPs_9784 0 0 0 0 0 Nucleus 1 0.500231643914772 1 0.999536712170457 hm5C_site_12158 DeepMRMD:1;iRNA_m5C:0.999536712170457 12159 chr12 27848344 27848344 1 + T C rs146907125 27848342 + 27848322 27848362 41 GGATTACAGGCGTGAGCCACCATGCCCGGCCCAAATATTTT GGATTACAGGCGTGAGCCACCACGCCCGGCCCAAATATTTT < 41bp 1 0.427587112569953 1 0.441116809844971 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPFIBP1 ENSG00000110841 UTR3 Human protein_coding chr12:27848342 chr12:27848344 . . 0 23 hm5C_associated_SNPs_9785 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12159 DeepMRMD:1;iRNA_m5C:0.999536712157815 12160 chr12 31236917 31236917 1 + G A rs146986956 31236904 + 31236884 31236924 41 GTCTTCTTCCTGCGAAGGGGCTGCAGGCACCCCGAGGCCTG GTCTTCTTCCTGCGAAGGGGCTGCAGGCACCCCAAGGCCTG < 41bp 1 0.682259950034307 1 0.438158363103867 experiment 0.635480099931387 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31236904 chr12:31236917 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_9786 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12160 DeepMRMD:1;iRNA_m5C:0.999536712157815 12161 chr12 32138410 32138410 1 + A G rs12827942 32138422 + 32138402 32138442 41 TCTAAAGAATCATTAAATGGCTTGACAAGCCATGGTAAAAA TCTAAAGAGTCATTAAATGGCTTGACAAGCCATGGTAAAAA < 41bp 1 0.522732889818014 1 0.14793199300766 experiment 0.954534220363971 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA1551 ENSG00000174718 CDS Human protein_coding chr12:32138422 chr12:32138410 synonymous SNV . 0 9 hm5C_associated_SNPs_9787 0 0 0 0 0 Cytosol 1 0.50023164393697 1 0.999536712126059 hm5C_site_12161 DeepMRMD:1;iRNA_m5C:0.999536712126059 12162 chr12 32138437 32138437 1 + T G rs200406684 32138422 + 32138402 32138442 41 TCTAAAGAATCATTAAATGGCTTGACAAGCCATGGTAAAAA TCTAAAGAATCATTAAATGGCTTGACAAGCCATGGGAAAAA < 41bp 1 0.483232300595414 1 0.0808623731136322 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA1551 ENSG00000174718 CDS Human protein_coding chr12:32138422 chr12:32138437 synonymous SNV . 0 36 hm5C_associated_SNPs_9788 0 0 1 0 0 Cytosol 1 0.500231643921104 1 0.999536712157792 hm5C_site_12162 DeepMRMD:1;iRNA_m5C:0.999536712157792 12163 chr12 32490764 32490764 1 + G A rs2270786 32490760 + 32490740 32490780 41 CAGAGGAAAAGGTATGCATGCAGCGATCTTCATAGTACGGT CAGAGGAAAAGGTATGCATGCAGCAATCTTCATAGTACGGT < 41bp 1 0.402457399603232 1 0.116113871335983 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICD1 ENSG00000151746 intronic Human protein_coding chr12:32490760 chr12:32490764 . . 0 25 hm5C_associated_SNPs_9789 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_12163 DeepMRMD:1;iRNA_m5C:0.999536712157815 12164 chr12 48358057 48358057 1 + C T rs34116679 48358052 + 48358032 48358072 41 CATTCCGCTGCTGCTCGCCCCTCCTCCTGCAGGCGAAAGCA CATTCCGCTGCTGCTCGCCCCTCCTTCTGCAGGCGAAAGCA < 41bp 1 0.537772445358061 1 0.74234926700592 experiment 0.924455109283878 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48358052 chr12:48358057 nonsynonymous SNV 0.001 0 26 hm5C_associated_SNPs_9791 0 0 1 0 1 Ribosome 1 0.500231643921247 0.51530146598816 0.999536712157505 hm5C_site_12164 DeepMRMD:0.51530146598816;iRNA_m5C:0.999536712157505 12165 chr12 48362412 48362412 1 + G C rs6823 48362431 + 48362411 48362451 41 TGGCAGCAGAGAGGGACCATCCAAATACCTAAGAGAAAACA TCGCAGCAGAGAGGGACCATCCAAATACCTAAGAGAAAACA < 41bp 1 0.681567547111285 1 0.500009477138519 experiment 0.636864905777431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM106C ENSG00000134291 UTR3 Human protein_coding chr12:48362431 chr12:48362412 . . 0 2 hm5C_associated_SNPs_9792 0 0 1 1 0 Ribosome 1 0.500231645283055 0.999981045722962 0.99953670943389 hm5C_site_12165 DeepMRMD:0.999981045722962;iRNA_m5C:0.99953670943389 12166 chr12 49663409 49663409 1 + A C rs115048428 49663396 + 49663376 49663416 41 AGGAGATGATTCCTTCAACACCTTCTTCAGTGAAACGGGTG AGGAGATGATTCCTTCAACACCTTCTTCAGTGACACGGGTG < 41bp 1 0.0572182954477959 1 0.0372923612594604 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TUBA1C ENSG00000167553 CDS Human protein_coding chr12:49663396 chr12:49663409 nonsynonymous SNV 0.854 2 34 hm5C_associated_SNPs_9793 0 0 1 0 1 Cytosol 1 0.500231643898613 1 0.999536712202773 hm5C_site_12166 DeepMRMD:1;iRNA_m5C:0.999536712202773 12167 chr12 49888751 49888751 1 + C A rs200315994 49888749 + 49888729 49888769 41 ATGCCAGAGAATTGGAGGATCCCGAGTCTGCCATGCTAGAT ATGCCAGAGAATTGGAGGATCCAGAGTCTGCCATGCTAGAT < 41bp 1 0.614720401773003 1 0.657199025154114 experiment 0.770559196453994 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPATS2 ENSG00000123352 CDS Human protein_coding chr12:49888749 chr12:49888751 synonymous SNV . 0 23 hm5C_associated_SNPs_9794 0 0 1 0 1 chromatin 1 0.50023168231602 0.685601949691772 0.99953663536796 hm5C_site_12167 DeepMRMD:0.685601949691772;iRNA_m5C:0.99953663536796 12168 chr12 50157054 50157054 1 + G A rs377472837 50157061 + 50157041 50157081 41 GGTAGAGCCACCCGGCCCTTCCTTCCTCATTGTTGTTTGGT GGTAGAGCCACCCAGCCCTTCCTTCCTCATTGTTGTTTGGT < 41bp 1 0.0179302701964694 1 0.140259265899658 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMBIM6 ENSG00000139644 UTR3 Human protein_coding chr12:50157061 chr12:50157054 . . 0 14 hm5C_associated_SNPs_9795 0 0 1 0 0 Ribosome 1 0.5002316439469 1 0.9995367121062 hm5C_site_12168 DeepMRMD:1;iRNA_m5C:0.9995367121062 12169 chr12 50157071 50157071 1 + T C rs7688 50157061 + 50157041 50157081 41 GGTAGAGCCACCCGGCCCTTCCTTCCTCATTGTTGTTTGGT GGTAGAGCCACCCGGCCCTTCCTTCCTCATCGTTGTTTGGT < 41bp 1 0.0296952555757128 1 0.095958411693573 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMBIM6 ENSG00000139644 UTR3 Human protein_coding chr12:50157061 chr12:50157071 . . 0 31 hm5C_associated_SNPs_9796 0 0 1 0 0 Ribosome 1 0.500231644160098 1 0.999536711679804 hm5C_site_12169 DeepMRMD:1;iRNA_m5C:0.999536711679804 12170 chr12 50157266 50157266 1 + C T rs138542934 50157275 + 50157255 50157295 41 ACACCTTTCTGCTTTGCCTTCACAAAAGTAATGTGTTCCCT ACACCTTTCTGTTTTGCCTTCACAAAAGTAATGTGTTCCCT < 41bp 1 0.687301768539809 1 0.360590815544128 experiment 0.625396462920383 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMBIM6 ENSG00000139644 UTR3 Human protein_coding chr12:50157275 chr12:50157266 . . 0 12 hm5C_associated_SNPs_9797 0 0 1 0 0 Ribosome 1 0.500231643936144 1 0.999536712127712 hm5C_site_12170 DeepMRMD:1;iRNA_m5C:0.999536712127712 12171 chr12 50452852 50452852 1 + C T rs141895319 50452871 + 50452851 50452891 41 GCCAAGTCTCCAAGAATGACCTGTATCATGCTGGGGAGCTG GTCAAGTCTCCAAGAATGACCTGTATCATGCTGGGGAGCTG < 41bp 1 0.537863115077784 1 0.192070215940475 experiment 0.924273769844432 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50452871 chr12:50452852 synonymous SNV . 0 2 hm5C_associated_SNPs_9798 0 0 0 0 1 exosome 1 0.500231752780398 1 0.999536494439204 hm5C_site_12171 DeepMRMD:1;iRNA_m5C:0.999536494439204 12172 chr12 50870145 50870145 1 + G A rs4491331 50870144 + 50870124 50870164 41 TATGGCCTTGTATTGCAAAGCGGATCAGTGGCTGGGGTGCC TATGGCCTTGTATTGCAAAGCAGATCAGTGGCTGGGGTGCC < 41bp 1 0.525368184222694 1 0.694510102272034 experiment 0.949263631554611 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARP4 ENSG00000161813 UTR3 Human protein_coding chr12:50870144 chr12:50870145 . . 0 22 hm5C_associated_SNPs_9799 0 0 1 0 0 Nucleus 1 0.500231643921092 0.610979795455932 0.999536712157815 hm5C_site_12172 DeepMRMD:0.610979795455932;iRNA_m5C:0.999536712157815 12173 chr12 51117100 51117100 1 + T G rs536039018 51117087 + 51117067 51117107 41 CCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATG CCTCACGGCCACGCTGCCCACTGTCCGAATGATGGTTGATG < 41bp 1 0.10413878740563 1 0.0681718587875366 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51117087 chr12:51117100 nonsynonymous SNV 0.994 3 34 hm5C_associated_SNPs_9800 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12173 DeepMRMD:1;iRNA_m5C:0.999536712157815 12174 chr12 51141883 51141883 1 + A G rs4768915 51141882 + 51141862 51141902 41 TAATGCTTTTGTTGACTCAACAAGGGCCCGAGGCCTTAGGT TAATGCTTTTGTTGACTCAACGAGGGCCCGAGGCCTTAGGT < 41bp 1 0.66533619116164 1 0.830130338668823 experiment 0.669327617676721 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DIP2B ENSG00000066084 UTR3 Human protein_coding chr12:51141882 chr12:51141883 . . 0 22 hm5C_associated_SNPs_9801 0 0 0 0 0 Nucleus 1 0.500231643921093 0.339739322662354 0.999536712157814 hm5C_site_12174 DeepMRMD:0.339739322662354;iRNA_m5C:0.999536712157814 12175 chr12 51632667 51632667 1 + G C rs542124123 51632676 + 51632656 51632696 41 TCCGCGACGCCGAGACAAACCGGACCCGCAACCACCATGAA TCCGCGACGCCCAGACAAACCGGACCCGCAACCACCATGAA < 41bp 1 0.617590710848938 1 0.490456163883209 experiment 0.764818578302124 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAZAP2 ENSG00000183283 UTR5 Human protein_coding chr12:51632676 chr12:51632667 . . 0 12 hm5C_associated_SNPs_9802 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12175 DeepMRMD:1;iRNA_m5C:0.999536712157815 12176 chr12 51637365 51637365 1 + T G rs192230455 51637349 + 51637329 51637369 41 AATGTTTTGATTTTTGTTTTCTGAAATTGGATTTTATTTTA AATGTTTTGATTTTTGTTTTCTGAAATTGGATTTTAGTTTA < 41bp 1 0.480111925515365 1 0.798597574234009 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DAZAP2 ENSG00000183283 UTR3 Human protein_coding chr12:51637349 chr12:51637365 . . 0 37 hm5C_associated_SNPs_9803 0 0 1 0 0 Ribosome 1 0.500234181419209 0.402804851531982 0.999531637161582 hm5C_site_12176 DeepMRMD:0.402804851531982;iRNA_m5C:0.999531637161582 12177 chr12 52631299 52631299 1 + A G rs374707928 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAGGATGAAATTAACCACCGCACAGCTGCTGAGAA < 41bp 1 0.123381639522689 1 0.0393050611019135 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631299 synonymous SNV . 0 9 hm5C_associated_SNPs_9804 0 0 0 0 2 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_12177 DeepMRMD:1;iRNA_m5C:0.999536712157818 12178 chr12 52631299 52631299 1 + A G rs374707928 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAGGATGAAATTAACCACCGCACAGCTGCTGAGAAT < 41bp 1 0.661088777226747 1 0.286792576313019 experiment 0.677822445546507 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631299 synonymous SNV . 0 8 hm5C_associated_SNPs_9805 0 0 0 0 2 Cytosol 1 0.50023138770234 1 0.999537224595321 hm5C_site_12178 DeepMRMD:1;iRNA_m5C:0.999537224595321 12179 chr12 52631299 52631299 1 + A G rs374707928 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAGGATGAAATTAACCACCGCACAGCTGCTGAGAATGA < 41bp 1 0.223934487997492 1 0.0968449711799622 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631299 synonymous SNV . 0 6 hm5C_associated_SNPs_9806 0 0 0 0 2 Cytosol 1 0.500234474982856 1 0.999531050034288 hm5C_site_12179 DeepMRMD:1;iRNA_m5C:0.999531050034288 12180 chr12 52631299 52631299 1 + A G rs374707928 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAGGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG < 41bp 1 0.150366004874493 1 0.109043955802917 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631299 synonymous SNV . 0 5 hm5C_associated_SNPs_9807 0 0 0 0 2 Cytosol 1 0.500231765304906 1 0.999536469390189 hm5C_site_12180 DeepMRMD:1;iRNA_m5C:0.999536469390189 12181 chr12 52631312 52631312 1 + C T rs184504813 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAAGATGAAATTAACTACCGCACAGCTGCTGAGAA < 41bp 1 0.232754761191038 1 0.0427255630493164 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631312 nonsynonymous SNV 0.160 1 22 hm5C_associated_SNPs_9808 0 0 0 0 2 Cytosol 1 0.500231643919717 1 0.999536712160566 hm5C_site_12181 DeepMRMD:1;iRNA_m5C:0.999536712160566 12182 chr12 52631312 52631312 1 + C T rs184504813 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAAGATGAAATTAACTACCGCACAGCTGCTGAGAATGA < 41bp 1 0.224879023264883 1 0.112587213516235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631312 nonsynonymous SNV 0.160 1 19 hm5C_associated_SNPs_9809 0 0 0 0 2 Cytosol 1 0.500231633713598 1 0.999536732572804 hm5C_site_12182 DeepMRMD:1;iRNA_m5C:0.999536732572804 12183 chr12 52631312 52631312 1 + C T rs184504813 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAAGATGAAATTAACTACCGCACAGCTGCTGAGAATGAG < 41bp 1 0.200175816396194 1 0.148708313703537 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631312 nonsynonymous SNV 0.160 1 18 hm5C_associated_SNPs_9810 0 0 0 0 2 Cytosol 1 0.500301938888284 1 0.999396122223431 hm5C_site_12183 DeepMRMD:1;iRNA_m5C:0.999396122223431 12184 chr12 52631313 52631313 1 + A G rs6580870 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAAGATGAAATTAACCGCCGCACAGCTGCTGAGAA < 41bp 1 0.160012589176839 1 0.0389615595340729 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631313 nonsynonymous SNV 0.144 0 23 hm5C_associated_SNPs_9811 0 0 0 0 2 Cytosol 1 0.500231642777974 1 0.999536714444051 hm5C_site_12184 DeepMRMD:1;iRNA_m5C:0.999536714444051 12185 chr12 52631313 52631313 1 + A G rs6580870 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAAGATGAAATTAACCGCCGCACAGCTGCTGAGAAT < 41bp 1 0.677723359492381 1 0.358838826417923 experiment 0.644553281015239 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631313 nonsynonymous SNV 0.144 0 22 hm5C_associated_SNPs_9812 0 0 0 0 2 Cytosol 1 0.500231643393312 1 0.999536713213377 hm5C_site_12185 DeepMRMD:1;iRNA_m5C:0.999536713213377 12186 chr12 52631313 52631313 1 + A G rs6580870 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAAGATGAAATTAACCGCCGCACAGCTGCTGAGAATGA < 41bp 1 0.196474026777452 1 0.110420614480972 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631313 nonsynonymous SNV 0.144 0 20 hm5C_associated_SNPs_9813 0 0 0 0 2 Cytosol 1 0.500232569826678 1 0.999534860346644 hm5C_site_12186 DeepMRMD:1;iRNA_m5C:0.999534860346644 12187 chr12 52631313 52631313 1 + A G rs6580870 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAAGATGAAATTAACCGCCGCACAGCTGCTGAGAATGAG < 41bp 1 0.114142747156133 1 0.0826995670795441 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631313 nonsynonymous SNV 0.144 0 19 hm5C_associated_SNPs_9814 0 0 0 0 2 Cytosol 1 0.500231648848653 1 0.999536702302694 hm5C_site_12187 DeepMRMD:1;iRNA_m5C:0.999536702302694 12188 chr12 52635360 52635360 1 + G A rs999665 52635378 + 52635358 52635398 41 GCGCAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC GCACAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC < 41bp 1 0.373477342827096 1 0.524900376796722 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52635378 chr12:52635360 synonymous SNV . 0 3 hm5C_associated_SNPs_9815 0 0 1 0 1 Cytosol 1 0.500231644499991 0.950199246406556 0.999536711000018 hm5C_site_12188 DeepMRMD:0.950199246406556;iRNA_m5C:0.999536711000018 12189 chr12 52636843 52636843 1 + G A rs10564 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCTCCGAAATACCCGGAATGAGAT < 41bp 1 0.395993698069035 1 0.702654838562012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636843 synonymous SNV . 0 24 hm5C_associated_SNPs_9816 0 0 0 0 2 Cytosol 1 0.500231643921092 0.594690322875976 0.999536712157815 hm5C_site_12189 DeepMRMD:0.594690322875976;iRNA_m5C:0.999536712157815 12190 chr12 52636843 52636843 1 + G A rs10564 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCTCCGAAATACCCGGAATGAGATT < 41bp 1 0.515026829456894 1 0.769826531410217 experiment 0.969946341086212 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636843 synonymous SNV . 0 23 hm5C_associated_SNPs_9817 0 0 0 0 2 Cytosol 1 0.500231643921092 0.460346937179566 0.999536712157815 hm5C_site_12190 DeepMRMD:0.460346937179566;iRNA_m5C:0.999536712157815 12191 chr12 52636874 52636874 1 + C T rs7963792 52636873 + 52636853 52636893 41 AATGAGATTTCAGAGATGAACCGGGCCATCCAGAGGCTGCA AATGAGATTTCAGAGATGAACTGGGCCATCCAGAGGCTGCA < 41bp 1 0.626024823938124 1 0.224676907062531 experiment 0.747950352123752 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636873 chr12:52636874 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_9818 0 0 0 0 2 Cytosol 1 0.500231581100343 1 0.999536837799313 hm5C_site_12191 DeepMRMD:1;iRNA_m5C:0.999536837799313 12192 chr12 53342963 53342963 1 + C T rs141170056 53342950 + 53342930 53342970 41 TCCTGTCCTTTCTCTCTCCCCGGACAGCATGAGCTTCACCA TCCTGTCCTTTCTCTCTCCCCGGACAGCATGAGTTTCACCA < 41bp 1 0.168529597818746 1 0.320132225751877 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53342950 chr12:53342963 synonymous SNV . 0 34 hm5C_associated_SNPs_9823 0 0 1 0 1 Cytosol 1 0.500231643929907 1 0.999536712140186 hm5C_site_12192 DeepMRMD:1;iRNA_m5C:0.999536712140186 12193 chr12 53342963 53342963 1 + C T rs141170056 53342977 + 53342957 53342997 41 CATGAGCTTCACCACTCGCTCCACCTTCTCCACCAACTACC CATGAGTTTCACCACTCGCTCCACCTTCTCCACCAACTACC < 41bp 1 0.128475279152756 1 0.108160674571991 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53342977 chr12:53342963 synonymous SNV . 0 7 hm5C_associated_SNPs_9824 0 0 1 0 1 Cytosol 1 0.500231643836768 1 0.999536712326464 hm5C_site_12193 DeepMRMD:1;iRNA_m5C:0.999536712326464 12194 chr12 53342963 53342963 1 + C T rs141170056 53342978 + 53342958 53342998 41 ATGAGCTTCACCACTCGCTCCACCTTCTCCACCAACTACCG ATGAGTTTCACCACTCGCTCCACCTTCTCCACCAACTACCG < 41bp 1 0.242406221163394 1 0.0299873650074005 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53342978 chr12:53342963 synonymous SNV . 0 6 hm5C_associated_SNPs_9825 0 0 1 0 1 Cytosol 1 0.500214092248976 1 0.999571815502047 hm5C_site_12194 DeepMRMD:1;iRNA_m5C:0.999571815502047 12195 chr12 53342963 53342963 1 + C T rs141170056 53342980 + 53342960 53343000 41 GAGCTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGT GAGTTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGT < 41bp 1 0.0182348888402191 1 0.0171572268009186 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53342980 chr12:53342963 synonymous SNV . 0 4 hm5C_associated_SNPs_9826 0 0 1 0 1 Cytosol 1 0.500231641457664 1 0.999536717084673 hm5C_site_12195 DeepMRMD:1;iRNA_m5C:0.999536717084673 12196 chr12 53342963 53342963 1 + C T rs141170056 53342981 + 53342961 53343001 41 AGCTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGTC AGTTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGTC < 41bp 1 0.171874510752202 1 0.0812294185161591 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53342981 chr12:53342963 synonymous SNV . 0 3 hm5C_associated_SNPs_9827 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12196 DeepMRMD:1;iRNA_m5C:0.999536712157815 12197 chr12 53412610 53412610 1 + C T rs185747457 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATGATGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA < 41bp 1 0.327892162090649 1 0.0807921886444092 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412610 synonymous SNV . 0 7 hm5C_associated_SNPs_9828 0 0 1 0 1 Cytosol 1 0.500231630122797 1 0.999536739754406 hm5C_site_12197 DeepMRMD:1;iRNA_m5C:0.999536739754406 12198 chr12 53412610 53412610 1 + C T rs185747457 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGATGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC < 41bp 1 0.0498288947359465 1 0.0546877980232239 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412610 synonymous SNV . 0 5 hm5C_associated_SNPs_9829 0 0 1 0 1 Cytosol 1 0.50023164397664 1 0.99953671204672 hm5C_site_12198 DeepMRMD:1;iRNA_m5C:0.99953671204672 12199 chr12 53412646 53412646 1 + C A rs200433061 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATA < 41bp 1 0.0477030368376982 1 0.0349003672599792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412646 synonymous SNV . 0 41 hm5C_associated_SNPs_9830 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12199 DeepMRMD:1;iRNA_m5C:0.999536712157815 12200 chr12 53427597 53427597 1 + C A rs115214256 53427592 + 53427572 53427612 41 AAGTTTCATTTAACTTAGGTCCCCCCCAAAGACCCAAACTG AAGTTTCATTTAACTTAGGTCCCCCACAAAGACCCAAACTG < 41bp 1 0.0503697329404807 1 0.0634445250034332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53427592 chr12:53427597 synonymous SNV . 0 26 hm5C_associated_SNPs_9831 0 0 1 0 1 Cytosol 1 0.500231648162641 1 0.999536703674717 hm5C_site_12200 DeepMRMD:1;iRNA_m5C:0.999536703674717 12201 chr12 53428432 53428432 1 + G A rs369208771 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACGAGAACGGTCGAGGACAGGAAGTGAG < 41bp 1 0.27368727231328 1 0.507350444793701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428432 synonymous SNV . 0 17 hm5C_associated_SNPs_9832 0 0 1 0 2 Cytosol 1 0.500231643926215 0.985299110412598 0.999536712147571 hm5C_site_12201 DeepMRMD:0.985299110412598;iRNA_m5C:0.999536712147571 12202 chr12 53433486 53433486 1 + C T rs8916 53433478 + 53433458 53433498 41 CAAAGAAACCTGAGGAAAATCCAGCTTCCGTAAGTGTTGAA CAAAGAAACCTGAGGAAAATCCAGCTTCTGTAAGTGTTGAA < 41bp 1 0.278697294034122 1 0.22906705737114 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433478 chr12:53433486 synonymous SNV . 0 29 hm5C_associated_SNPs_9834 0 0 1 0 2 Cytosol 1 0.500231644044389 1 0.999536711911221 hm5C_site_12202 DeepMRMD:1;iRNA_m5C:0.999536711911221 12203 chr12 53434820 53434820 1 + A G rs192141649 53434829 + 53434809 53434849 41 TTCTGTGTCCTAGTTTTACCCTTTCTAAACACTGTCCTTTT TTCTGTGTCCTGGTTTTACCCTTTCTAAACACTGTCCTTTT < 41bp 1 0.0987513679876312 1 0.26406341791153 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EIF4B ENSG00000257337 ncRNA_intronic Human antisense chr12:53434829 chr12:53434820 . . 0 12 hm5C_associated_SNPs_9835 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12203 DeepMRMD:1;iRNA_m5C:0.999536712157815 12204 chr12 53583667 53583667 1 + A G rs57787354 53583668 + 53583648 53583688 41 CCCTCTGTCCCTGCCACTTACAGCTAGTCTCTTTGGGATAG CCCTCTGTCCCTGCCACTTGCAGCTAGTCTCTTTGGGATAG < 41bp 1 0.488255222576752 1 0.360882550477982 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF740 ENSG00000139651 UTR3 Human protein_coding chr12:53583668 chr12:53583667 . . 0 20 hm5C_associated_SNPs_9836 0 0 1 0 0 Ribosome 1 0.50023164447047 1 0.999536711059061 hm5C_site_12204 DeepMRMD:1;iRNA_m5C:0.999536711059061 12205 chr12 53584012 53584012 1 + C T rs529869142 53584000 + 53583980 53584020 41 TGATTTGGCATCCAGAGGGCCCGGGAGCCCCACGGATACCC TGATTTGGCATCCAGAGGGCCCGGGAGCCCCATGGATACCC < 41bp 1 0.649218374769645 1 0.421426832675934 experiment 0.701563250460711 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF740 ENSG00000139651 UTR3 Human protein_coding chr12:53584000 chr12:53584012 . . 0 33 hm5C_associated_SNPs_9837 0 0 1 0 0 Ribosome 1 0.500231643381823 1 0.999536713236353 hm5C_site_12205 DeepMRMD:1;iRNA_m5C:0.999536713236353 12206 chr12 53584076 53584076 1 + C T rs143415157 53584056 + 53584036 53584076 41 CTCACACCGCTGCAGAGGCTCCTGGGCCCAATGCCCGACCC CTCACACCGCTGCAGAGGCTCCTGGGCCCAATGCCCGACCT < 41bp 1 0.68349441012618 1 0.361695110797882 experiment 0.633011179747641 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF740 ENSG00000139651 UTR3 Human protein_coding chr12:53584056 chr12:53584076 . . 0 41 hm5C_associated_SNPs_9838 0 0 1 0 0 Ribosome 1 0.500231643921051 1 0.999536712157898 hm5C_site_12206 DeepMRMD:1;iRNA_m5C:0.999536712157898 12207 chr12 53584076 53584076 1 + C T rs143415157 53584063 + 53584043 53584083 41 CGCTGCAGAGGCTCCTGGGCCCAATGCCCGACCCCTGCTGG CGCTGCAGAGGCTCCTGGGCCCAATGCCCGACCTCTGCTGG < 41bp 1 0.40326990299751 1 0.185598105192184 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF740 ENSG00000139651 UTR3 Human protein_coding chr12:53584063 chr12:53584076 . . 0 34 hm5C_associated_SNPs_9840 0 0 1 0 0 Ribosome 1 0.500230936346665 1 0.999538127306671 hm5C_site_12207 DeepMRMD:1;iRNA_m5C:0.999538127306671 12208 chr12 53584076 53584076 1 + C T rs143415157 53584064 + 53584044 53584084 41 GCTGCAGAGGCTCCTGGGCCCAATGCCCGACCCCTGCTGGC GCTGCAGAGGCTCCTGGGCCCAATGCCCGACCTCTGCTGGC < 41bp 1 0.666740181665757 1 0.125341892242432 experiment 0.666519636668486 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF740 ENSG00000139651 UTR3 Human protein_coding chr12:53584064 chr12:53584076 . . 0 33 hm5C_associated_SNPs_9841 0 0 1 0 0 Ribosome 1 0.500231643921577 1 0.999536712156847 hm5C_site_12208 DeepMRMD:1;iRNA_m5C:0.999536712156847 12209 chr12 53584083 53584083 1 + G A rs139349151 53584063 + 53584043 53584083 41 CGCTGCAGAGGCTCCTGGGCCCAATGCCCGACCCCTGCTGG CGCTGCAGAGGCTCCTGGGCCCAATGCCCGACCCCTGCTGA < 41bp 1 0.441829459610366 1 0.352320820093155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF740 ENSG00000139651 UTR3 Human protein_coding chr12:53584063 chr12:53584083 . . 0 41 hm5C_associated_SNPs_9842 0 0 1 0 0 Ribosome 1 0.50023168587509 1 0.99953662824982 hm5C_site_12209 DeepMRMD:1;iRNA_m5C:0.99953662824982 12210 chr12 53584083 53584083 1 + G A rs139349151 53584064 + 53584044 53584084 41 GCTGCAGAGGCTCCTGGGCCCAATGCCCGACCCCTGCTGGC GCTGCAGAGGCTCCTGGGCCCAATGCCCGACCCCTGCTGAC < 41bp 1 0.672743887971782 1 0.105388849973679 experiment 0.654512224056436 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF740 ENSG00000139651 UTR3 Human protein_coding chr12:53584064 chr12:53584083 . . 0 40 hm5C_associated_SNPs_9843 0 0 1 0 0 Ribosome 1 0.500225436863289 1 0.999549126273422 hm5C_site_12210 DeepMRMD:1;iRNA_m5C:0.999549126273422 12211 chr12 53690217 53690217 1 + G A rs113187830 53690215 + 53690195 53690235 41 TTTTTCTTTCTTTTTTGAGACGGAATTTCGCTCTGTCGCCC TTTTTCTTTCTTTTTTGAGACGAAATTTCGCTCTGTCGCCC < 41bp 1 0.50880426178624 1 0.394164144992828 experiment 0.982391476427519 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFDN5 ENSG00000123349 CDS Human protein_coding chr12:53690215 chr12:53690217 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_9844 0 0 1 0 1 Ribosome 1 0.500231623483665 1 0.999536753032671 hm5C_site_12211 DeepMRMD:1;iRNA_m5C:0.999536753032671 12212 chr12 53700848 53700848 1 + C T rs1534282 53700859 + 53700839 53700879 41 GCGGCTTCACTGGCGGTCACCACACCCGAGAGGGTGCCTTG GCGGCTTCATTGGCGGTCACCACACCCGAGAGGGTGCCTTG < 41bp 1 0.555101354501865 1 0.280366361141205 experiment 0.88979729099627 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700859 chr12:53700848 nonsynonymous SNV 0.995 0 10 hm5C_associated_SNPs_9845 0 0 1 0 1 cytosol 1 0.500231046228181 1 0.999537907543638 hm5C_site_12212 DeepMRMD:1;iRNA_m5C:0.999537907543638 12213 chr12 53700852 53700852 1 + C T rs371647277 53700859 + 53700839 53700879 41 GCGGCTTCACTGGCGGTCACCACACCCGAGAGGGTGCCTTG GCGGCTTCACTGGTGGTCACCACACCCGAGAGGGTGCCTTG < 41bp 1 0.553596372203663 1 0.36497962474823 experiment 0.892807255592674 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700859 chr12:53700852 synonymous SNV . 0 14 hm5C_associated_SNPs_9846 0 0 1 0 0 cytosol 1 0.500231456009327 1 0.999537087981347 hm5C_site_12213 DeepMRMD:1;iRNA_m5C:0.999537087981347 12214 chr12 53700853 53700853 1 + G A rs142953883 53700859 + 53700839 53700879 41 GCGGCTTCACTGGCGGTCACCACACCCGAGAGGGTGCCTTG GCGGCTTCACTGGCAGTCACCACACCCGAGAGGGTGCCTTG < 41bp 1 0.555772438022739 1 0.369680672883987 experiment 0.888455123954522 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700859 chr12:53700853 nonsynonymous SNV 0.984 4 15 hm5C_associated_SNPs_9847 0 0 1 0 0 cytosol 1 0.500231643555997 1 0.999536712888007 hm5C_site_12214 DeepMRMD:1;iRNA_m5C:0.999536712888007 12215 chr12 53700860 53700860 1 + A G rs711316 53700859 + 53700839 53700879 41 GCGGCTTCACTGGCGGTCACCACACCCGAGAGGGTGCCTTG GCGGCTTCACTGGCGGTCACCGCACCCGAGAGGGTGCCTTG < 41bp 1 0.615527366824096 1 0.508378148078918 experiment 0.768945266351808 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700859 chr12:53700860 nonsynonymous SNV 0.954 0 22 hm5C_associated_SNPs_9848 0 0 1 0 0 cytosol 1 0.500231372394851 0.983243703842164 0.999537255210297 hm5C_site_12215 DeepMRMD:0.983243703842164;iRNA_m5C:0.999537255210297 12216 chr12 53854790 53854790 1 + A G rs557980143 53854793 + 53854773 53854813 41 ATTTTGAATTTCTTTTTACTCCAAAGAGTACAGGGGCTCAG ATTTTGAATTTCTTTTTGCTCCAAAGAGTACAGGGGCTCAG < 41bp 1 0.302221748504282 1 0.257339000701904 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCBP2 ENSG00000257379 ncRNA_intronic Human processed_transcript chr12:53854793 chr12:53854790 . . 0 18 hm5C_associated_SNPs_9849 0 0 1 1 0 Cytosol 1 0.500231674314336 1 0.999536651371329 hm5C_site_12216 DeepMRMD:1;iRNA_m5C:0.999536651371329 12217 chr12 53854790 53854790 1 + A G rs557980143 53854794 + 53854774 53854814 41 TTTTGAATTTCTTTTTACTCCAAAGAGTACAGGGGCTCAGG TTTTGAATTTCTTTTTGCTCCAAAGAGTACAGGGGCTCAGG < 41bp 1 0.201492253775746 1 0.395569354295731 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCBP2 ENSG00000257379 ncRNA_intronic Human processed_transcript chr12:53854794 chr12:53854790 . . 0 17 hm5C_associated_SNPs_9850 0 0 1 1 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12217 DeepMRMD:1;iRNA_m5C:0.999536712157815 12218 chr12 54394087 54394087 1 + A C rs569699265 54394072 + 54394052 54394092 41 GGTTTCCGGCCACCGGGGCTCATCCCGCCGCCGCCAGACCC GGTTTCCGGCCACCGGGGCTCATCCCGCCGCCGCCCGACCC < 41bp 1 0.285278309524648 1 0.0735413134098053 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54394072 chr12:54394087 synonymous SNV . 0 36 hm5C_associated_SNPs_9851 0 0 0 0 0 chromatin 1 0.500231799441563 1 0.999536401116875 hm5C_site_12218 DeepMRMD:1;iRNA_m5C:0.999536401116875 12219 chr12 54428700 54428700 1 + C T rs61921796 54428717 + 54428697 54428737 41 TCCCGGCTGGACGGGTTAGACAGCCAAAGGCTGGCGAGAGT TCCTGGCTGGACGGGTTAGACAGCCAAAGGCTGGCGAGAGT < 41bp 1 0.442992502939933 1 0.488176912069321 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOXC5 ENSG00000273046 ncRNA_exonic Human processed_transcript chr12:54428717 chr12:54428700 . . 0 4 hm5C_associated_SNPs_9852 0 0 0 0 0 exosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_12219 DeepMRMD:1;iRNA_m5C:0.999536712157806 12220 chr12 54678342 54678342 1 + C A rs537037310 54678327 + 54678307 54678347 41 CAACTTTATTCCATATTGTTCAACAGGAAACAAAGCTTAGC CAACTTTATTCCATATTGTTCAACAGGAAACAAAGATTAGC < 41bp 1 0.252524421838109 1 0.138254970312119 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HNRNPA1P10 ENSG00000258344 ncRNA_intronic Human sense_overlapping chr12:54678327 chr12:54678342 . . 0 36 hm5C_associated_SNPs_9853 0 0 1 2 1 unknown 1 0.500231643921042 1 0.999536712157917 hm5C_site_12220 DeepMRMD:1;iRNA_m5C:0.999536712157917 12221 chr12 54943480 54943480 1 + G A rs115589692 54943498 + 54943478 54943518 41 AGGAGCCGCAGGAGCTGCAGCTCTGCCAGCTTGGGCCGAGC AGAAGCCGCAGGAGCTGCAGCTCTGCCAGCTTGGGCCGAGC < 41bp 1 0.342861597123349 1 0.747929215431213 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE1B ENSG00000123360 UTR5 Human protein_coding chr12:54943498 chr12:54943480 . . 0 3 hm5C_associated_SNPs_9854 0 0 0 0 1 exosome 1 0.500231643920441 0.504141569137574 0.999536712159119 hm5C_site_12221 DeepMRMD:0.504141569137574;iRNA_m5C:0.999536712159119 12222 chr12 54943488 54943488 1 + G C rs568127468 54943498 + 54943478 54943518 41 AGGAGCCGCAGGAGCTGCAGCTCTGCCAGCTTGGGCCGAGC AGGAGCCGCACGAGCTGCAGCTCTGCCAGCTTGGGCCGAGC < 41bp 1 0.342018675462867 1 0.496656954288483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE1B ENSG00000123360 UTR5 Human protein_coding chr12:54943498 chr12:54943488 . . 0 11 hm5C_associated_SNPs_9855 0 0 0 0 1 exosome 1 0.500231643921086 1 0.999536712157827 hm5C_site_12222 DeepMRMD:1;iRNA_m5C:0.999536712157827 12223 chr12 56075840 56075840 1 + C T rs74421938 56075823 + 56075803 56075843 41 CCACCGGGCTGCAGGGTCACCTGCCTAGACCCAAATCCCCA CCACCGGGCTGCAGGGTCACCTGCCTAGACCCAAATCTCCA < 41bp 1 0.411059454722845 1 0.0605827867984772 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL7B ENSG00000170439 CDS Human protein_coding chr12:56075823 chr12:56075840 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_9856 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12223 DeepMRMD:1;iRNA_m5C:0.999536712157815 12224 chr12 56335341 56335341 1 + A C rs199795969 56335343 + 56335323 56335363 41 ACCCTCGACAGGTGTTCAACCTCCTAAAGGATGGTCCTGAG ACCCTCGACAGGTGTTCACCCTCCTAAAGGATGGTCCTGAG < 41bp 1 0.665197028515902 1 0.741010308265686 experiment 0.669605942968197 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DGKA ENSG00000065357 CDS Human protein_coding chr12:56335343 chr12:56335341 nonsynonymous SNV 0.832 2 19 hm5C_associated_SNPs_9857 0 0 0 0 0 Cytosol 1 0.500231643921092 0.517979383468628 0.999536712157815 hm5C_site_12224 DeepMRMD:0.517979383468628;iRNA_m5C:0.999536712157815 12225 chr12 56365699 56365699 1 + C A rs2069414 56365708 + 56365688 56365728 41 TTTAAAAAAGCCTTCCTACACGTTAGATTTGCCGTACCAAT TTTAAAAAAGCATTCCTACACGTTAGATTTGCCGTACCAAT < 41bp 1 0.282255892059952 1 0.071856826543808 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDK2 ENSG00000123374 UTR3 Human protein_coding chr12:56365708 chr12:56365699 . . 0 12 hm5C_associated_SNPs_9858 0 0 1 0 0 Ribosome 1 0.500231643915574 1 0.999536712168853 hm5C_site_12225 DeepMRMD:1;iRNA_m5C:0.999536712168853 12226 chr12 56388307 56388307 1 + C T rs187146028 56388294 + 56388274 56388314 41 GGCTTGGGGATCTTAGTTTTCTTTTGTTTATTTCCCAGCTC GGCTTGGGGATCTTAGTTTTCTTTTGTTTATTTTCCAGCTC < 41bp 1 0.186449971822174 1 0.0909078121185303 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5B ENSG00000255990 ncRNA_exonic Human other chr12:56388294 chr12:56388307 . . 0 34 hm5C_associated_SNPs_9859 0 0 1 0 0 Cytosol 1 0.500231643920123 1 0.999536712159754 hm5C_site_12226 DeepMRMD:1;iRNA_m5C:0.999536712159754 12227 chr12 56388307 56388307 1 + C T rs187146028 56388308 + 56388288 56388328 41 AGTTTTCTTTTGTTTATTTCCCAGCTCATTTTTTTCTTCTG AGTTTTCTTTTGTTTATTTTCCAGCTCATTTTTTTCTTCTG < 41bp 1 0.219264713135991 1 0.805207490921021 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5B ENSG00000255990 ncRNA_exonic Human other chr12:56388308 chr12:56388307 . . 0 20 hm5C_associated_SNPs_9860 0 0 1 0 0 Cytosol 1 0.499955491211499 0.389585018157958 1 hm5C_site_12227 DeepMRMD:0.389585018157958;iRNA_m5C:1 12228 chr12 56388307 56388307 1 + C T rs187146028 56388309 + 56388289 56388329 41 GTTTTCTTTTGTTTATTTCCCAGCTCATTTTTTTCTTCTGG GTTTTCTTTTGTTTATTTTCCAGCTCATTTTTTTCTTCTGG < 41bp 1 0.29509435192769 1 0.742076694965363 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5B ENSG00000255990 ncRNA_exonic Human other chr12:56388309 chr12:56388307 . . 0 19 hm5C_associated_SNPs_9861 0 0 1 0 0 Cytosol 1 0.500231643968612 0.515846610069274 0.999536712062777 hm5C_site_12228 DeepMRMD:0.515846610069274;iRNA_m5C:0.999536712062777 12229 chr12 56435858 56435858 1 + C T rs555702040 56435855 + 56435835 56435875 41 TTGCCGTTCTTGAAGCCCGTCTCCTAAGGATTCTCCCGGTG TTGCCGTTCTTGAAGCCCGTCTCTTAAGGATTCTCCCGGTG < 41bp 1 0.132818429409767 1 0.0337993800640106 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS26 ENSG00000197728 UTR5 Human protein_coding chr12:56435855 chr12:56435858 . . 0 24 hm5C_associated_SNPs_9862 0 0 1 0 1 Ribosome 1 0.500231643870674 1 0.999536712258652 hm5C_site_12229 DeepMRMD:1;iRNA_m5C:0.999536712258652 12230 chr12 56506779 56506779 1 + G A rs530012784 56506794 + 56506774 56506814 41 AGAGCGGGGGGATCTCCCTGCCCCCACCCCAGTTCCCCAAC AGAGCAGGGGGATCTCCCTGCCCCCACCCCAGTTCCCCAAC < 41bp 1 0.376692937685406 1 0.21268817782402 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PA2G4 ENSG00000257553 ncRNA_intronic Human antisense chr12:56506794 chr12:56506779 . . 0 6 hm5C_associated_SNPs_9863 0 0 1 0 0 Ribosome 1 0.500231645941271 1 0.999536708117458 hm5C_site_12230 DeepMRMD:1;iRNA_m5C:0.999536708117458 12231 chr12 56506779 56506779 1 + G A rs530012784 56506796 + 56506776 56506816 41 AGCGGGGGGATCTCCCTGCCCCCACCCCAGTTCCCCAACCC AGCAGGGGGATCTCCCTGCCCCCACCCCAGTTCCCCAACCC < 41bp 1 0.330230257787018 1 0.135750710964203 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PA2G4 ENSG00000257553 ncRNA_intronic Human antisense chr12:56506796 chr12:56506779 . . 0 4 hm5C_associated_SNPs_9865 0 0 1 0 0 Ribosome 1 0.500231637407505 1 0.999536725184989 hm5C_site_12231 DeepMRMD:1;iRNA_m5C:0.999536725184989 12232 chr12 56506779 56506779 1 + G A rs530012784 56506797 + 56506777 56506817 41 GCGGGGGGATCTCCCTGCCCCCACCCCAGTTCCCCAACCCA GCAGGGGGATCTCCCTGCCCCCACCCCAGTTCCCCAACCCA < 41bp 1 0.234257877005577 1 0.0977607667446136 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PA2G4 ENSG00000257553 ncRNA_intronic Human antisense chr12:56506797 chr12:56506779 . . 0 3 hm5C_associated_SNPs_9866 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12232 DeepMRMD:1;iRNA_m5C:0.999536712157815 12233 chr12 56506779 56506779 1 + G A rs530012784 56506798 + 56506778 56506818 41 CGGGGGGATCTCCCTGCCCCCACCCCAGTTCCCCAACCCAC CAGGGGGATCTCCCTGCCCCCACCCCAGTTCCCCAACCCAC < 41bp 1 0.501553421577619 1 0.106489509344101 experiment 0.996893156844761 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PA2G4 ENSG00000257553 ncRNA_intronic Human antisense chr12:56506798 chr12:56506779 . . 0 2 hm5C_associated_SNPs_9867 0 0 1 0 0 Ribosome 1 0.500231643877888 1 0.999536712244224 hm5C_site_12233 DeepMRMD:1;iRNA_m5C:0.999536712244224 12234 chr12 56506803 56506803 1 + C G rs548528381 56506794 + 56506774 56506814 41 AGAGCGGGGGGATCTCCCTGCCCCCACCCCAGTTCCCCAAC AGAGCGGGGGGATCTCCCTGCCCCCACCCGAGTTCCCCAAC < 41bp 1 0.3817906950585 1 0.145054191350937 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PA2G4 ENSG00000257553 ncRNA_intronic Human antisense chr12:56506794 chr12:56506803 . . 0 30 hm5C_associated_SNPs_9868 0 0 1 0 0 Ribosome 1 0.500231588910702 1 0.999536822178597 hm5C_site_12234 DeepMRMD:1;iRNA_m5C:0.999536822178597 12235 chr12 56506803 56506803 1 + C G rs548528381 56506796 + 56506776 56506816 41 AGCGGGGGGATCTCCCTGCCCCCACCCCAGTTCCCCAACCC AGCGGGGGGATCTCCCTGCCCCCACCCGAGTTCCCCAACCC < 41bp 1 0.348961247227026 1 0.15949684381485 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PA2G4 ENSG00000257553 ncRNA_intronic Human antisense chr12:56506796 chr12:56506803 . . 0 28 hm5C_associated_SNPs_9869 0 0 1 0 0 Ribosome 1 0.500231636193924 1 0.999536727612152 hm5C_site_12235 DeepMRMD:1;iRNA_m5C:0.999536727612152 12236 chr12 56506803 56506803 1 + C G rs548528381 56506797 + 56506777 56506817 41 GCGGGGGGATCTCCCTGCCCCCACCCCAGTTCCCCAACCCA GCGGGGGGATCTCCCTGCCCCCACCCGAGTTCCCCAACCCA < 41bp 1 0.261632886851725 1 0.0853477418422699 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PA2G4 ENSG00000257553 ncRNA_intronic Human antisense chr12:56506797 chr12:56506803 . . 0 27 hm5C_associated_SNPs_9870 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12236 DeepMRMD:1;iRNA_m5C:0.999536712157815 12237 chr12 56506803 56506803 1 + C G rs548528381 56506798 + 56506778 56506818 41 CGGGGGGATCTCCCTGCCCCCACCCCAGTTCCCCAACCCAC CGGGGGGATCTCCCTGCCCCCACCCGAGTTCCCCAACCCAC < 41bp 1 0.645765628937381 1 0.128514230251312 experiment 0.708468742125239 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PA2G4 ENSG00000257553 ncRNA_intronic Human antisense chr12:56506798 chr12:56506803 . . 0 26 hm5C_associated_SNPs_9871 0 0 1 0 0 Ribosome 1 0.50023164406307 1 0.99953671187386 hm5C_site_12237 DeepMRMD:1;iRNA_m5C:0.99953671187386 12238 chr12 56510500 56510500 1 + C A rs376739018 56510516 + 56510496 56510536 41 CTGACCTCGGCACTTAGCATCATCACAGCAAACTAACTGTA CTGAACTCGGCACTTAGCATCATCACAGCAAACTAACTGTA < 41bp 1 0.354518831110484 1 0.0819647908210754 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL41 ENSG00000229117 UTR5 Human protein_coding chr12:56510516 chr12:56510500 . . 0 5 hm5C_associated_SNPs_9872 0 0 1 0 1 Cytosol 1 0.50023164358195 1 0.9995367128361 hm5C_site_12238 DeepMRMD:1;iRNA_m5C:0.9995367128361 12239 chr12 56516133 56516133 1 + G A rs181608102 56516142 + 56516122 56516162 41 GGACAATACAGGAATTGCTTCTGGGCCCTGGGAAAGCTGGG GGACAATACAGAAATTGCTTCTGGGCCCTGGGAAAGCTGGG < 41bp 1 0.641573425391061 1 0.775223135948181 experiment 0.716853149217877 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZC3H10 ENSG00000258317 ncRNA_intronic Human antisense chr12:56516142 chr12:56516133 . . 0 12 hm5C_associated_SNPs_9873 0 0 0 0 0 Ribosome 1 0.500231643923656 0.449553728103638 0.999536712152689 hm5C_site_12239 DeepMRMD:0.449553728103638;iRNA_m5C:0.999536712152689 12240 chr12 56516156 56516156 1 + A G rs11171746 56516142 + 56516122 56516162 41 GGACAATACAGGAATTGCTTCTGGGCCCTGGGAAAGCTGGG GGACAATACAGGAATTGCTTCTGGGCCCTGGGAAGGCTGGG < 41bp 1 0.679208037109385 1 0.811369478702545 experiment 0.641583925781229 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZC3H10 ENSG00000258317 ncRNA_intronic Human antisense chr12:56516142 chr12:56516156 . . 0 35 hm5C_associated_SNPs_9874 0 0 0 0 0 Ribosome 1 0.500231639220934 0.37726104259491 0.999536721558132 hm5C_site_12240 DeepMRMD:0.37726104259491;iRNA_m5C:0.999536721558132 12241 chr12 56532009 56532009 1 + C A rs35075600 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATCTGGCCGCCTGCACTTGAGCCTGGAGCG < 41bp 1 0.0563052461410771 1 0.483076691627502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56532009 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_9876 0 0 1 0 2 Endoplasmic reticulum 1 0.5002316439209 1 0.999536712158201 hm5C_site_12241 DeepMRMD:1;iRNA_m5C:0.999536712158201 12242 chr12 56532009 56532009 1 + C A rs35075600 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATCTGGCCGCCTGCACTTGAGCCTGGAGCGT < 41bp 1 0.534913622734176 1 0.511815190315247 experiment 0.930172754531648 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56532009 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_9877 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643906024 0.976369619369506 0.999536712187951 hm5C_site_12242 DeepMRMD:0.976369619369506;iRNA_m5C:0.999536712187951 12243 chr12 56554111 56554111 1 + G A rs75503023 56554126 + 56554106 56554146 41 TAAGAGGTGAACTGCGCTTTCTCAGAGAAAGCAGCCATATG TAAGAAGTGAACTGCGCTTTCTCAGAGAAAGCAGCCATATG < 41bp 1 0.59714729288718 1 0.126215815544128 experiment 0.80570541422564 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYL6 ENSG00000092841 CDS Human protein_coding chr12:56554126 chr12:56554111 nonsynonymous SNV 0.854 1 6 hm5C_associated_SNPs_9878 0 0 1 0 1 Ribosome 1 0.500517397713719 1 0.998965204572561 hm5C_site_12243 DeepMRMD:1;iRNA_m5C:0.998965204572561 12244 chr12 56629587 56629587 1 + G A rs146231478 56629577 + 56629557 56629597 41 GGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGCCCAAG GGTGGCTCACGCCTGTAATCCCAGCACTTTAGGAGCCCAAG < 41bp 1 0.105791421895854 1 0.317379891872406 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC39A5 ENSG00000139540 intronic Human protein_coding chr12:56629577 chr12:56629587 . . 0 31 hm5C_associated_SNPs_9879 0 0 0 0 0 cytosol 1 0.500231643619722 1 0.999536712760557 hm5C_site_12244 DeepMRMD:1;iRNA_m5C:0.999536712760557 12245 chr12 56629587 56629587 1 + G A rs146231478 56629578 + 56629558 56629598 41 GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGCCCAAGG GTGGCTCACGCCTGTAATCCCAGCACTTTAGGAGCCCAAGG < 41bp 1 0.583051218134747 1 0.783141911029816 experiment 0.833897563730506 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC39A5 ENSG00000139540 intronic Human protein_coding chr12:56629578 chr12:56629587 . . 0 30 hm5C_associated_SNPs_9880 0 0 0 0 0 cytosol 1 0.500231643921092 0.433716177940368 0.999536712157815 hm5C_site_12245 DeepMRMD:0.433716177940368;iRNA_m5C:0.999536712157815 12246 chr12 56629587 56629587 1 + G A rs146231478 56629581 + 56629561 56629601 41 GCTCACGCCTGTAATCCCAGCACTTTGGGAGCCCAAGGCGG GCTCACGCCTGTAATCCCAGCACTTTAGGAGCCCAAGGCGG < 41bp 1 0.0864880260461583 1 0.129180878400803 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC39A5 ENSG00000139540 intronic Human protein_coding chr12:56629581 chr12:56629587 . . 0 27 hm5C_associated_SNPs_9881 0 0 0 0 0 cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_12246 DeepMRMD:1;iRNA_m5C:0.999536712157806 12247 chr12 56629587 56629587 1 + G A rs146231478 56629583 + 56629563 56629603 41 TCACGCCTGTAATCCCAGCACTTTGGGAGCCCAAGGCGGGC TCACGCCTGTAATCCCAGCACTTTAGGAGCCCAAGGCGGGC < 41bp 1 0.13573130886555 1 0.264689147472382 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC39A5 ENSG00000139540 intronic Human protein_coding chr12:56629583 chr12:56629587 . . 0 25 hm5C_associated_SNPs_9882 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12247 DeepMRMD:1;iRNA_m5C:0.999536712157815 12248 chr12 56629587 56629587 1 + G A rs146231478 56629593 + 56629573 56629613 41 AATCCCAGCACTTTGGGAGCCCAAGGCGGGCAGATCACAAG AATCCCAGCACTTTAGGAGCCCAAGGCGGGCAGATCACAAG < 41bp 1 0.192551894689215 1 0.665831089019775 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC39A5 ENSG00000139540 intronic Human protein_coding chr12:56629593 chr12:56629587 . . 0 15 hm5C_associated_SNPs_9883 0 0 0 0 0 cytosol 1 0.500231643925302 0.66833782196045 0.999536712149397 hm5C_site_12248 DeepMRMD:0.66833782196045;iRNA_m5C:0.999536712149397 12249 chr12 56664224 56664224 1 + C A rs538924843 56664231 + 56664211 56664251 41 CTGTTTCTCCTCTCAATTTCCCAGAAATTGGGTTCTATGCT CTGTTTCTCCTCTAAATTTCCCAGAAATTGGGTTCTATGCT < 41bp 1 0.382638647714841 1 0.572826385498047 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COQ10A ENSG00000135469 UTR3 Human protein_coding chr12:56664231 chr12:56664224 . . 0 14 hm5C_associated_SNPs_9884 0 0 1 0 0 chromatin 1 0.500231643921092 0.854347229003906 0.999536712157815 hm5C_site_12249 DeepMRMD:0.854347229003906;iRNA_m5C:0.999536712157815 12250 chr12 56862381 56862381 1 + G A rs148180043 56862382 + 56862362 56862402 41 ATCCAAGGCGCAAGATGGCGCTGCTTTTTGCACGTTCTTTG ATCCAAGGCGCAAGATGGCACTGCTTTTTGCACGTTCTTTG < 41bp 1 0.565978888691708 1 0.0600553750991821 experiment 0.868042222616585 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPRYD4 ENSG00000176422 CDS Human protein_coding chr12:56862382 chr12:56862381 synonymous SNV . 0 20 hm5C_associated_SNPs_9885 0 0 1 0 1 Cytosol 1 0.50023166157819 1 0.999536676843621 hm5C_site_12250 DeepMRMD:1;iRNA_m5C:0.999536676843621 12251 chr12 57167939 57167939 1 + G A rs141210914 57167934 + 57167914 57167954 41 CTACTCAGTGGGTGAAGGAGCATGTGGGGGACAGAGGTATG CTACTCAGTGGGTGAAGGAGCATGTAGGGGACAGAGGTATG < 41bp 1 0.425882962098266 1 0.266766548156738 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57167934 chr12:57167939 synonymous SNV . 0 26 hm5C_associated_SNPs_9886 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12251 DeepMRMD:1;iRNA_m5C:0.999536712157815 12252 chr12 57548466 57548466 1 + C T rs1800137 57548481 + 57548461 57548501 41 CAGACCATCATCCAGGGCATCCTGGTGAGGGAGCTACTGTC CAGACTATCATCCAGGGCATCCTGGTGAGGGAGCTACTGTC < 41bp 1 0.0734835564532244 1 0.127378731966019 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57548481 chr12:57548466 synonymous SNV . 0 6 hm5C_associated_SNPs_9887 0 0 1 0 1 Exosome 1 0.500231644260257 1 0.999536711479486 hm5C_site_12252 DeepMRMD:1;iRNA_m5C:0.999536711479486 12253 chr12 57560825 57560825 1 + G A rs78054559 57560805 + 57560785 57560825 41 TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTCG TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTCA < 41bp 1 0.0516741604073532 1 0.283891916275024 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57560805 chr12:57560825 synonymous SNV . 0 41 hm5C_associated_SNPs_9888 0 0 1 0 1 Exosome 1 0.500240306179373 1 0.999519387641254 hm5C_site_12253 DeepMRMD:1;iRNA_m5C:0.999519387641254 12254 chr12 57571249 57571249 1 + C T rs2228187 57571257 + 57571237 57571277 41 CAGCCTGCCCCGCATTGAGGCAGCCTCCATGAGTGGGGCTG CAGCCTGCCCCGTATTGAGGCAGCCTCCATGAGTGGGGCTG < 41bp 1 0.119876417912573 1 0.411263763904572 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57571257 chr12:57571249 synonymous SNV . 0 13 hm5C_associated_SNPs_9889 0 0 1 0 1 Exosome 1 0.5002316439211 1 0.9995367121578 hm5C_site_12254 DeepMRMD:1;iRNA_m5C:0.9995367121578 12255 chr12 57588469 57588469 1 + C T rs182309785 57588474 + 57588454 57588494 41 TGAACATGGCGAGGACGAGACCCACTGCAGTGAGTGACCAC TGAACATGGCGAGGATGAGACCCACTGCAGTGAGTGACCAC < 41bp 1 0.0385292183671054 1 0.0379864275455475 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57588474 chr12:57588469 synonymous SNV . 0 16 hm5C_associated_SNPs_9890 0 0 1 0 1 Exosome 1 0.500231576223965 1 0.999536847552069 hm5C_site_12255 DeepMRMD:1;iRNA_m5C:0.999536847552069 12256 chr12 57597282 57597282 1 + C T rs2228192 57597276 + 57597256 57597296 41 GACGCCGACTGCATGGACGGCAGCGACGAGGAGGCCTGCGG GACGCCGACTGCATGGACGGCAGCGATGAGGAGGCCTGCGG < 41bp 1 0.261580763882412 1 0.21911346912384 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57597276 chr12:57597282 synonymous SNV . 0 27 hm5C_associated_SNPs_9891 0 0 1 0 1 Exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12256 DeepMRMD:1;iRNA_m5C:0.999536712157815 12257 chr12 57619341 57619341 1 + C T rs74788814 57619359 + 57619339 57619379 41 CACCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCAC CATCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCAC < 41bp 1 0.335049000932806 1 0.212098211050034 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619359 chr12:57619341 synonymous SNV . 0 3 hm5C_associated_SNPs_9892 0 0 0 0 0 exosome 1 0.500231456546858 1 0.999537086906283 hm5C_site_12257 DeepMRMD:1;iRNA_m5C:0.999537086906283 12258 chr12 57619341 57619341 1 + C T rs74788814 57619360 + 57619340 57619380 41 ACCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACC ATCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACC < 41bp 1 0.0954846293939493 1 0.262116432189941 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619360 chr12:57619341 synonymous SNV . 0 2 hm5C_associated_SNPs_9893 0 0 0 0 0 exosome 1 0.500231641518897 1 0.999536716962206 hm5C_site_12258 DeepMRMD:1;iRNA_m5C:0.999536716962206 12259 chr12 57619341 57619341 1 + C T rs74788814 57619361 + 57619341 57619381 41 CCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACCG TCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACCG < 41bp 1 0.426034255482114 1 0.18521523475647 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619361 chr12:57619341 synonymous SNV . 0 1 hm5C_associated_SNPs_9894 0 0 0 0 0 exosome 1 0.500231644788259 1 0.999536710423483 hm5C_site_12259 DeepMRMD:1;iRNA_m5C:0.999536710423483 12260 chr12 57619359 57619359 1 + C T rs17854829 57619360 + 57619340 57619380 41 ACCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACC ACCGACCGTGCCTGTACGATCCGTCGCAGGTGTGCTTCACC < 41bp 1 0.1304421771281 1 0.272560656070709 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619360 chr12:57619359 synonymous SNV . 0 20 hm5C_associated_SNPs_9895 0 0 0 0 0 exosome 1 0.500231643558538 1 0.999536712882925 hm5C_site_12260 DeepMRMD:1;iRNA_m5C:0.999536712882925 12261 chr12 57619359 57619359 1 + C T rs17854829 57619361 + 57619341 57619381 41 CCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACCG CCGACCGTGCCTGTACGATCCGTCGCAGGTGTGCTTCACCG < 41bp 1 0.416928467591554 1 0.217555195093155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619361 chr12:57619359 synonymous SNV . 0 19 hm5C_associated_SNPs_9896 0 0 0 0 0 exosome 1 0.500231631878565 1 0.99953673624287 hm5C_site_12261 DeepMRMD:1;iRNA_m5C:0.99953673624287 12262 chr12 57619362 57619362 1 + G A rs10783816 57619359 + 57619339 57619379 41 CACCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCAC CACCGACCGTGCCTGTACGACCCATCGCAGGTGTGCTTCAC < 41bp 1 0.133557272457454 1 0.153905034065247 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619359 chr12:57619362 synonymous SNV . 0 24 hm5C_associated_SNPs_9897 0 0 1 0 0 exosome 1 0.500232194733655 1 0.999535610532691 hm5C_site_12262 DeepMRMD:1;iRNA_m5C:0.999535610532691 12263 chr12 57619362 57619362 1 + G A rs10783816 57619360 + 57619340 57619380 41 ACCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACC ACCGACCGTGCCTGTACGACCCATCGCAGGTGTGCTTCACC < 41bp 1 0.0577655926169359 1 0.201883584260941 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619360 chr12:57619362 synonymous SNV . 0 23 hm5C_associated_SNPs_9898 0 0 1 0 0 exosome 1 0.500212533264511 1 0.999574933470979 hm5C_site_12263 DeepMRMD:1;iRNA_m5C:0.999574933470979 12264 chr12 57619362 57619362 1 + G A rs10783816 57619361 + 57619341 57619381 41 CCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACCG CCGACCGTGCCTGTACGACCCATCGCAGGTGTGCTTCACCG < 41bp 1 0.366563791455457 1 0.100317865610123 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619361 chr12:57619362 synonymous SNV . 0 22 hm5C_associated_SNPs_9899 0 0 1 0 0 exosome 1 0.500231727282158 1 0.999536545435684 hm5C_site_12264 DeepMRMD:1;iRNA_m5C:0.999536545435684 12265 chr12 57626954 57626954 1 + C T rs371621472 57626956 + 57626936 57626976 41 GACTCTGACCATCCACCTCTCACACAGGTCAGGGCTCATCT GACTCTGACCATCCACCTTTCACACAGGTCAGGGCTCATCT < 41bp 1 0.125347106421609 1 0.0630306899547577 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SHMT2 ENSG00000182199 intronic Human protein_coding chr12:57626956 chr12:57626954 . . 0 19 hm5C_associated_SNPs_9900 0 0 1 0 0 Cytosol 1 0.500231657564214 1 0.999536684871572 hm5C_site_12265 DeepMRMD:1;iRNA_m5C:0.999536684871572 12266 chr12 57627860 57627860 1 + G A rs202118297 57627865 + 57627845 57627885 41 TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGAG TTTATAGATGAAGGGATCAACATTGGCTTAGAGGTGAAGAG < 41bp 1 0.245839057723613 1 0.0968706607818604 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627865 chr12:57627860 nonsynonymous SNV 0.992 1 16 hm5C_associated_SNPs_9901 0 0 1 0 2 Cytosol 1 0.50023164392148 1 0.99953671215704 hm5C_site_12266 DeepMRMD:1;iRNA_m5C:0.99953671215704 12267 chr12 57911160 57911160 1 + G A rs697221 57911153 - 57911133 57911173 41 TGCCTTTCTCCTTCGGGACACTGTCCAGCTGGGAGCTGGAA TGCCTTTCTCCTTTGGGACACTGTCCAGCTGGGAGCTGGAA < 41bp 1 0.221038544330934 1 0.0971768498420715 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911153 chr12:57911160 synonymous SNV 0.981 0 14 hm5C_associated_SNPs_9902 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12267 DeepMRMD:1;iRNA_m5C:0.999536712157815 12268 chr12 57919829 57919829 1 + C G rs77189304 57919809 + 57919789 57919829 41 CCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTC CCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTG < 41bp 1 0.0842029111671715 1 0.12808632850647 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919809 chr12:57919829 nonsynonymous SNV 0.971 0 41 hm5C_associated_SNPs_9903 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12268 DeepMRMD:1;iRNA_m5C:0.999536712157815 12269 chr12 57919829 57919829 1 + C G rs77189304 57919812 + 57919792 57919832 41 TGCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTC TGCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTGGTC < 41bp 1 0.0672826755523939 1 0.0543093383312225 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919812 chr12:57919829 nonsynonymous SNV 0.971 0 38 hm5C_associated_SNPs_9904 0 0 1 0 0 chromatin 1 0.500231643743474 1 0.999536712513052 hm5C_site_12269 DeepMRMD:1;iRNA_m5C:0.999536712513052 12270 chr12 57919829 57919829 1 + C G rs77189304 57919813 + 57919793 57919833 41 GCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCC GCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTGGTCC < 41bp 1 0.0835612589546087 1 0.0736740231513977 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919813 chr12:57919829 nonsynonymous SNV 0.971 0 37 hm5C_associated_SNPs_9905 0 0 1 0 0 chromatin 1 0.500231643921017 1 0.999536712157966 hm5C_site_12270 DeepMRMD:1;iRNA_m5C:0.999536712157966 12271 chr12 57919829 57919829 1 + C G rs77189304 57919814 + 57919794 57919834 41 CCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCCC CCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTGGTCCC < 41bp 1 0.152221020730819 1 0.0647962093353271 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919814 chr12:57919829 nonsynonymous SNV 0.971 0 36 hm5C_associated_SNPs_9906 0 0 1 0 0 chromatin 1 0.500231640736847 1 0.999536718526306 hm5C_site_12271 DeepMRMD:1;iRNA_m5C:0.999536718526306 12272 chr12 57919829 57919829 1 + C G rs77189304 57919816 + 57919796 57919836 41 CAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCCCTC CAGGCACCCTCAGCTTCCCACTCCTCATCACTTGGTCCCTC < 41bp 1 0.29832063317299 1 0.399101972579956 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919816 chr12:57919829 nonsynonymous SNV 0.971 0 34 hm5C_associated_SNPs_9907 0 0 1 0 0 chromatin 1 0.500231642494044 1 0.999536715011913 hm5C_site_12272 DeepMRMD:1;iRNA_m5C:0.999536715011913 12273 chr12 57922962 57922962 1 + C G rs200717548 57922978 + 57922958 57922998 41 CCTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAG CCTCGCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAG < 41bp 1 0.0791054984128211 1 0.177037507295609 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57922978 chr12:57922962 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_9908 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_12273 DeepMRMD:1;iRNA_m5C:0.999536712157815 12274 chr12 58174038 58174038 1 + G A rs113423250 58174050 + 58174030 58174070 41 TCTCTCAGGGGGGGATGTTACCATCACTGACCTGCCCCTGG TCTCTCAGAGGGGGATGTTACCATCACTGACCTGCCCCTGG < 41bp 1 0.265283564283998 1 0.18127378821373 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EEF1AKMT3 ENSG00000123427 CDS Human protein_coding chr12:58174050 chr12:58174038 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_9910 0 0 0 0 1 unknown 1 0.50023168709527 1 0.99953662580946 hm5C_site_12274 DeepMRMD:1;iRNA_m5C:0.99953662580946 12275 chr12 58190184 58190184 1 + C A rs62000432 58190183 + 58190163 58190203 41 CATGTGGTGGGCATGGCCCCCCTCTCTGTTGGCTCCCTGGA CATGTGGTGGGCATGGCCCCCATCTCTGTTGGCTCCCTGGA < 41bp 1 0.476634957056393 1 0.340185761451721 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TSFM ENSG00000123297 CDS Human protein_coding chr12:58190183 chr12:58190184 nonsynonymous SNV 0.981 0 22 hm5C_associated_SNPs_9911 2 0 1 0 0 Cytosol 1 0.500230415286808 1 0.999539169426384 hm5C_site_12275 DeepMRMD:1;iRNA_m5C:0.999539169426384 not provided not provided 12276 chr12 62784650 62784650 1 + T C rs75305174 62784645 + 62784625 62784665 41 ATTTTTGATTTTACTTAAGCCGATATGTCAAAATATCTACT ATTTTTGATTTTACTTAAGCCGATACGTCAAAATATCTACT < 41bp 1 0.121143205995221 1 0.0360323786735535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient USP15 ENSG00000135655 CDS Human protein_coding chr12:62784645 chr12:62784650 synonymous SNV . 0 26 hm5C_associated_SNPs_9913 0 0 1 0 1 Ribosome 1 0.500231643940338 1 0.999536712119323 hm5C_site_12276 DeepMRMD:1;iRNA_m5C:0.999536712119323 12277 chr12 62798155 62798155 1 + A G rs138462391 62798172 + 62798152 62798192 41 CTAATGAAAGTCCTAGAAGCCATAAAAGAGACACTTTCCTG CTAGTGAAAGTCCTAGAAGCCATAAAAGAGACACTTTCCTG < 41bp 1 0.310091794946896 1 0.274403154850006 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient USP15 ENSG00000135655 CDS Human protein_coding chr12:62798172 chr12:62798155 synonymous SNV . 0 4 hm5C_associated_SNPs_9914 0 0 1 0 0 Ribosome 1 0.500231643922071 1 0.999536712155858 hm5C_site_12277 DeepMRMD:1;iRNA_m5C:0.999536712155858 12278 chr12 62931441 62931441 1 + G A rs79202632 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGCGCATTGCCATGGAGCTGTTCTTGGAACATCATGGC < 41bp 1 0.179007884611098 1 0.045130580663681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931441 synonymous SNV . 0 19 hm5C_associated_SNPs_9915 0 0 1 0 2 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_12278 DeepMRMD:1;iRNA_m5C:0.999536712157812 12279 chr12 62938748 62938748 1 + G T rs140799300 62938730 + 62938710 62938750 41 ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGGAT ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGTAT < 41bp 1 0.179687585533014 1 0.186669111251831 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62938730 chr12:62938748 nonsynonymous SNV 0.994 2 39 hm5C_associated_SNPs_9916 0 0 1 0 2 Nucleus 1 0.50023164392108 1 0.99953671215784 hm5C_site_12279 DeepMRMD:1;iRNA_m5C:0.99953671215784 12280 chr12 62946739 62946739 1 + A C rs147472788 62946733 + 62946713 62946753 41 TAAATAAGGAAGAGGCAGCACAGCAAAAGCAGGCAGAAGAG TAAATAAGGAAGAGGCAGCACAGCAACAGCAGGCAGAAGAG < 41bp 1 0.651930638883683 1 0.675869166851044 experiment 0.696138722232635 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62946733 chr12:62946739 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_9917 0 0 0 0 1 Nucleus 1 0.500237856424382 0.648261666297912 0.999524287151236 hm5C_site_12280 DeepMRMD:0.648261666297912;iRNA_m5C:0.999524287151236 12281 chr12 62946748 62946748 1 + G A rs148114740 62946733 + 62946713 62946753 41 TAAATAAGGAAGAGGCAGCACAGCAAAAGCAGGCAGAAGAG TAAATAAGGAAGAGGCAGCACAGCAAAAGCAGGCAAAAGAG < 41bp 1 0.666796418555428 1 0.713551878929138 experiment 0.666407162889144 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62946733 chr12:62946748 nonsynonymous SNV 0.999 1 36 hm5C_associated_SNPs_9918 0 0 0 0 1 Nucleus 1 0.500231634553109 0.572896242141724 0.999536730893783 hm5C_site_12281 DeepMRMD:0.572896242141724;iRNA_m5C:0.999536730893783 12282 chr12 62954482 62954482 1 + G A rs184173771 62954463 + 62954443 62954483 41 TGTGCCTGTTCTTATAGGGCCCATATCAGGCATGAGCAGGC TGTGCCTGTTCTTATAGGGCCCATATCAGGCATGAGCAGAC < 41bp 1 0.0840609674619491 1 0.139079302549362 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62954463 chr12:62954482 synonymous SNV . 0 40 hm5C_associated_SNPs_9919 0 0 1 0 0 Nucleus 1 0.50023164392111 1 0.99953671215778 hm5C_site_12282 DeepMRMD:1;iRNA_m5C:0.99953671215778 12283 chr12 64538767 64538767 1 + C T rs188383524 64538761 + 64538741 64538781 41 AGCTGGGATTACAGGCGCCACCACCACGCCCAGCTAATTTT AGCTGGGATTACAGGCGCCACCACCATGCCCAGCTAATTTT < 41bp 1 0.0980733573167188 1 0.0407662689685822 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SRGAP1 ENSG00000196935 UTR3 Human protein_coding chr12:64538761 chr12:64538767 . . 0 27 hm5C_associated_SNPs_9921 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12283 DeepMRMD:1;iRNA_m5C:0.999536712157815 12284 chr12 64538767 64538767 1 + C T rs188383524 64538764 + 64538744 64538784 41 TGGGATTACAGGCGCCACCACCACGCCCAGCTAATTTTTGT TGGGATTACAGGCGCCACCACCATGCCCAGCTAATTTTTGT < 41bp 1 0.0619939333730774 1 0.38733235001564 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SRGAP1 ENSG00000196935 UTR3 Human protein_coding chr12:64538764 chr12:64538767 . . 0 24 hm5C_associated_SNPs_9923 0 0 0 0 0 Nucleus 1 0.500231637893833 1 0.999536724212334 hm5C_site_12284 DeepMRMD:1;iRNA_m5C:0.999536724212334 12285 chr12 64538767 64538767 1 + C T rs188383524 64538765 + 64538745 64538785 41 GGGATTACAGGCGCCACCACCACGCCCAGCTAATTTTTGTA GGGATTACAGGCGCCACCACCATGCCCAGCTAATTTTTGTA < 41bp 1 0.10919562192055 1 0.841264247894287 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SRGAP1 ENSG00000196935 UTR3 Human protein_coding chr12:64538765 chr12:64538767 . . 0 23 hm5C_associated_SNPs_9924 0 0 0 0 0 Nucleus 1 0.500231643921092 0.317471504211426 0.999536712157816 hm5C_site_12285 DeepMRMD:0.317471504211426;iRNA_m5C:0.999536712157816 12286 chr12 64538767 64538767 1 + C T rs188383524 64538769 + 64538749 64538789 41 TTACAGGCGCCACCACCACGCCCAGCTAATTTTTGTATTTT TTACAGGCGCCACCACCATGCCCAGCTAATTTTTGTATTTT < 41bp 1 0.109142024414677 1 0.0646207928657532 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SRGAP1 ENSG00000196935 UTR3 Human protein_coding chr12:64538769 chr12:64538767 . . 0 19 hm5C_associated_SNPs_9925 0 0 0 0 0 Nucleus 1 0.500231643910088 1 0.999536712179824 hm5C_site_12286 DeepMRMD:1;iRNA_m5C:0.999536712179824 12287 chr12 65225988 65225988 1 + C T rs181148724 65225974 + 65225954 65225994 41 GGGTTGTGTTGAAGCGGGTGCTGCTGGCCTATGCCCGATGG GGGTTGTGTTGAAGCGGGTGCTGCTGGCCTATGCTCGATGG < 41bp 1 0.541928169065829 1 0.0846125781536102 experiment 0.916143661868343 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65225974 chr12:65225988 synonymous SNV . 0 35 hm5C_associated_SNPs_9926 0 0 0 0 2 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_12287 DeepMRMD:1;iRNA_m5C:0.999536712157815 12288 chr12 69633416 69633416 1 + G A rs200448686 69633411 + 69633391 69633431 41 GGCGGCGGCGGCGGCGGCGGCCGAGGCTGAAGGAAGATGGC GGCGGCGGCGGCGGCGGCGGCCGAGACTGAAGGAAGATGGC < 41bp 1 0.694005333769332 1 0.847369015216827 experiment 0.611989332461335 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CPSF6 ENSG00000111605 UTR5 Human protein_coding chr12:69633411 chr12:69633416 . . 0 26 hm5C_associated_SNPs_9931 0 0 1 0 1 Nucleus 1 0.500231643921092 0.305261969566346 0.999536712157815 hm5C_site_12288 DeepMRMD:0.305261969566346;iRNA_m5C:0.999536712157815 12289 chr12 70133399 70133399 1 + C A rs143387389 70133412 + 70133392 70133432 41 GTGAAACCTGGTGGGAAATTCCGGGCAGGCGCCCGGAGTCG GTGAAACATGGTGGGAAATTCCGGGCAGGCGCCCGGAGTCG < 41bp 1 0.674831280995051 1 0.786156594753265 experiment 0.650337438009898 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAB3IP ENSG00000127328 UTR5 Human protein_coding chr12:70133412 chr12:70133399 . . 0 8 hm5C_associated_SNPs_9932 0 0 1 0 0 Cytosol 1 0.500231577702332 0.42768681049347 0.999536844595335 hm5C_site_12289 DeepMRMD:0.42768681049347;iRNA_m5C:0.999536844595335 12290 chr12 70133433 70133433 1 + C T rs74101316 70133424 + 70133404 70133444 41 GGGAAATTCCGGGCAGGCGCCCGGAGTCGCGCCCAAGTAGG GGGAAATTCCGGGCAGGCGCCCGGAGTCGTGCCCAAGTAGG < 41bp 1 0.585095307835641 1 0.768917560577393 experiment 0.829809384328717 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAB3IP ENSG00000127328 UTR5 Human protein_coding chr12:70133424 chr12:70133433 . . 0 30 hm5C_associated_SNPs_9933 0 0 1 0 0 Cytosol 1 0.500231643921092 0.462164878845214 0.999536712157815 hm5C_site_12290 DeepMRMD:0.462164878845214;iRNA_m5C:0.999536712157815 12291 chr12 70747924 70747924 1 + G T rs374594056 70747908 + 70747888 70747928 41 TAAATTTGTAATTTGTTTTTCTCTAGTTTGAGCAGGGTCTG TAAATTTGTAATTTGTTTTTCTCTAGTTTGAGCAGGTTCTG < 41bp 1 0.40786686821349 1 0.539438366889954 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CNOT2 ENSG00000111596 UTR3 Human protein_coding chr12:70747908 chr12:70747924 . . 0 37 hm5C_associated_SNPs_9934 0 0 1 4 0 Nucleus 1 0.500231643635565 0.921123266220092 0.99953671272887 hm5C_site_12291 DeepMRMD:0.921123266220092;iRNA_m5C:0.99953671272887 12292 chr12 70932122 70932122 1 + T A rs573634436 70932128 + 70932108 70932148 41 CAGATGGGAAGTGATCTTATCTCCATTTTGCAGATGAGGCT CAGATGGGAAGTGAACTTATCTCCATTTTGCAGATGAGGCT < 41bp 1 0.48097542744794 1 0.927183032035828 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRB ENSG00000258168 ncRNA_exonic Human antisense chr12:70932128 chr12:70932122 . . 0 15 hm5C_associated_SNPs_9935 0 0 0 0 0 Nucleus 1 0.50023163954221 0.145633935928344 0.999536720915581 hm5C_site_12292 DeepMRMD:0.145633935928344;iRNA_m5C:0.999536720915581 12293 chr12 70932145 70932145 1 + G A rs538685109 70932128 + 70932108 70932148 41 CAGATGGGAAGTGATCTTATCTCCATTTTGCAGATGAGGCT CAGATGGGAAGTGATCTTATCTCCATTTTGCAGATGAAGCT < 41bp 1 0.444952342396801 1 0.933700561523438 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRB ENSG00000258168 ncRNA_exonic Human antisense chr12:70932128 chr12:70932145 . . 0 38 hm5C_associated_SNPs_9936 0 0 0 0 0 Nucleus 1 0.500231553110203 0.132598876953124 0.999536893779593 hm5C_site_12293 DeepMRMD:0.132598876953124;iRNA_m5C:0.999536893779593 12294 chr12 72096298 72096298 1 + G A rs142251569 72096315 + 72096295 72096335 41 CACGTTGGCTAGGCTGGTCTCGAACTCCTGACCTCAAGTGA CACATTGGCTAGGCTGGTCTCGAACTCCTGACCTCAAGTGA < 41bp 1 0.526167469004676 1 0.557955980300903 experiment 0.947665061990648 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM19 ENSG00000139291 UTR3 Human protein_coding chr12:72096315 chr12:72096298 . . 0 4 hm5C_associated_SNPs_9937 0 0 0 0 0 Endoplasmic reticulum 1 0.500231707594029 0.884088039398194 0.999536584811943 hm5C_site_12294 DeepMRMD:0.884088039398194;iRNA_m5C:0.999536584811943 12295 chr12 72096321 72096321 1 + C T rs146291637 72096315 + 72096295 72096335 41 CACGTTGGCTAGGCTGGTCTCGAACTCCTGACCTCAAGTGA CACGTTGGCTAGGCTGGTCTCGAACTTCTGACCTCAAGTGA < 41bp 1 0.580062663774615 1 0.607082784175873 experiment 0.839874672450769 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM19 ENSG00000139291 UTR3 Human protein_coding chr12:72096315 chr12:72096321 . . 0 27 hm5C_associated_SNPs_9938 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643506909 0.785834431648254 0.999536712986183 hm5C_site_12295 DeepMRMD:0.785834431648254;iRNA_m5C:0.999536712986183 12296 chr12 72096321 72096321 1 + C T rs146291637 72096319 + 72096299 72096339 41 TTGGCTAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTG TTGGCTAGGCTGGTCTCGAACTTCTGACCTCAAGTGATCTG < 41bp 1 0.402067641779142 1 0.039078414440155 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM19 ENSG00000139291 UTR3 Human protein_coding chr12:72096319 chr12:72096321 . . 0 23 hm5C_associated_SNPs_9939 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921106 1 0.999536712157788 hm5C_site_12296 DeepMRMD:1;iRNA_m5C:0.999536712157788 12297 chr12 72096321 72096321 1 + C T rs146291637 72096322 + 72096302 72096342 41 GCTAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCC GCTAGGCTGGTCTCGAACTTCTGACCTCAAGTGATCTGCCC < 41bp 1 0.669008113865674 1 0.799500823020935 experiment 0.661983772268653 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM19 ENSG00000139291 UTR3 Human protein_coding chr12:72096322 chr12:72096321 . . 0 20 hm5C_associated_SNPs_9940 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643924191 0.40099835395813 0.999536712151618 hm5C_site_12297 DeepMRMD:0.40099835395813;iRNA_m5C:0.999536712151618 12298 chr12 72096321 72096321 1 + C T rs146291637 72096326 + 72096306 72096346 41 GGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCCATCT GGCTGGTCTCGAACTTCTGACCTCAAGTGATCTGCCCATCT < 41bp 1 0.284046739476789 1 0.0373026728630066 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM19 ENSG00000139291 UTR3 Human protein_coding chr12:72096326 chr12:72096321 . . 0 16 hm5C_associated_SNPs_9941 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_12298 DeepMRMD:1;iRNA_m5C:0.999536712157814 12299 chr12 72179738 72179738 1 + C G rs144956158 72179720 + 72179700 72179740 41 GAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCACTG GAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTG < 41bp 1 0.587305066287436 1 0.0784195363521576 experiment 0.825389867425129 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179720 chr12:72179738 . . 0 39 hm5C_associated_SNPs_9943 0 0 1 0 0 Ribosome 1 0.50023164062904 1 0.999536718741921 hm5C_site_12299 DeepMRMD:1;iRNA_m5C:0.999536718741921 12300 chr12 72179738 72179738 1 + C G rs144956158 72179722 + 72179702 72179742 41 GACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCACTGGC GACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGC < 41bp 1 0.60105151541517 1 0.139824390411377 experiment 0.797896969169661 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179722 chr12:72179738 . . 0 37 hm5C_associated_SNPs_9944 0 0 1 0 0 Ribosome 1 0.500244417576002 1 0.999511164847996 hm5C_site_12300 DeepMRMD:1;iRNA_m5C:0.999511164847996 12301 chr12 72179738 72179738 1 + C G rs144956158 72179723 + 72179703 72179743 41 ACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCACTGGCT ACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCT < 41bp 1 0.61828733145767 1 0.410180807113647 experiment 0.763425337084659 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179723 chr12:72179738 . . 0 36 hm5C_associated_SNPs_9945 0 0 1 0 0 Ribosome 1 0.500231645452936 1 0.999536709094129 hm5C_site_12301 DeepMRMD:1;iRNA_m5C:0.999536709094129 12302 chr12 72179738 72179738 1 + C G rs144956158 72179753 + 72179733 72179773 41 GTGCACTGGCTTGATCTCGGCTCACTGCAAGCTCCACCTCC GTGCAGTGGCTTGATCTCGGCTCACTGCAAGCTCCACCTCC < 41bp 1 0.6001899697439 1 0.0453227162361145 experiment 0.799620060512199 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179753 chr12:72179738 . . 0 6 hm5C_associated_SNPs_9947 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_12302 DeepMRMD:1;iRNA_m5C:0.999536712157816 12303 chr12 72179738 72179738 1 + C G rs144956158 72179755 + 72179735 72179775 41 GCACTGGCTTGATCTCGGCTCACTGCAAGCTCCACCTCCCA GCAGTGGCTTGATCTCGGCTCACTGCAAGCTCCACCTCCCA < 41bp 1 0.679854184511779 1 0.0459799468517303 experiment 0.640291630976443 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179755 chr12:72179738 . . 0 4 hm5C_associated_SNPs_9948 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12303 DeepMRMD:1;iRNA_m5C:0.999536712157815 12304 chr12 72179750 72179750 1 + C T rs552509607 72179753 + 72179733 72179773 41 GTGCACTGGCTTGATCTCGGCTCACTGCAAGCTCCACCTCC GTGCACTGGCTTGATCTTGGCTCACTGCAAGCTCCACCTCC < 41bp 1 0.647808087885755 1 0.0252914428710938 experiment 0.70438382422849 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179753 chr12:72179750 . . 0 18 hm5C_associated_SNPs_9949 0 0 1 0 0 Ribosome 1 0.500231643921095 1 0.999536712157809 hm5C_site_12304 DeepMRMD:1;iRNA_m5C:0.999536712157809 12305 chr12 72179768 72179768 1 + A G rs185728614 72179753 + 72179733 72179773 41 GTGCACTGGCTTGATCTCGGCTCACTGCAAGCTCCACCTCC GTGCACTGGCTTGATCTCGGCTCACTGCAAGCTCCGCCTCC < 41bp 1 0.582772567792215 1 0.0358759462833405 experiment 0.83445486441557 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179753 chr12:72179768 . . 0 36 hm5C_associated_SNPs_9951 0 0 0 0 0 Ribosome 1 0.500231644729219 1 0.999536710541562 hm5C_site_12305 DeepMRMD:1;iRNA_m5C:0.999536710541562 12306 chr12 72179768 72179768 1 + A G rs185728614 72179755 + 72179735 72179775 41 GCACTGGCTTGATCTCGGCTCACTGCAAGCTCCACCTCCCA GCACTGGCTTGATCTCGGCTCACTGCAAGCTCCGCCTCCCA < 41bp 1 0.698994479723502 1 0.0415805578231812 experiment 0.602011040552996 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB21 ENSG00000080371 UTR3 Human protein_coding chr12:72179755 chr12:72179768 . . 0 34 hm5C_associated_SNPs_9952 0 0 0 0 0 Ribosome 1 0.500231643928103 1 0.999536712143795 hm5C_site_12306 DeepMRMD:1;iRNA_m5C:0.999536712143795 12307 chr12 75893227 75893227 1 + G T rs143054392 75893207 - 75893187 75893227 41 CCATGAACAGAAAATTAAGGCCTCTAAAATCAGATCCCCTA ACATGAACAGAAAATTAAGGCCTCTAAAATCAGATCCCCTA < 41bp 1 0.25268266583934 1 0.0774025022983551 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GLIPR1;KRR1 ENSG00000111615;ENSG00000139278 UTR3 Human other chr12:75893207 chr12:75893227 . . 0 1 hm5C_associated_SNPs_9955 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12307 DeepMRMD:1;iRNA_m5C:0.999536712157815 12308 chr12 93881368 93881368 1 + A G rs146944959 93881384 + 93881364 93881404 41 AGGAAGGACCTATGATAGAACAACTTAGCAAAATGTTCTTT AGGAGGGACCTATGATAGAACAACTTAGCAAAATGTTCTTT < 41bp 1 0.55195725946939 1 0.15004974603653 experiment 0.896085481061219 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL42 ENSG00000198015 CDS Human protein_coding chr12:93881384 chr12:93881368 synonymous SNV . 0 5 hm5C_associated_SNPs_9956 0 0 1 1 2 Cytosol 1 0.500231643918012 1 0.999536712163976 hm5C_site_12308 DeepMRMD:1;iRNA_m5C:0.999536712163976 12309 chr12 93964178 93964178 1 + T A rs548021767 93964191 + 93964171 93964211 41 CAGGACCTGATCAAGGGGACCGCCTCCGGTCCCCGGCCGTG CAGGACCAGATCAAGGGGACCGCCTCCGGTCCCCGGCCGTG < 41bp 1 0.40752465328214 1 0.138393372297287 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SOCS2-AS1 ENSG00000246985 ncRNA_intronic Human processed_transcript chr12:93964191 chr12:93964178 . . 0 8 hm5C_associated_SNPs_9957 0 0 0 0 0 unknown 1 0.500231643647433 1 0.999536712705135 hm5C_site_12309 DeepMRMD:1;iRNA_m5C:0.999536712705135 12310 chr12 95681533 95681533 1 + A G rs61735395 95681551 + 95681531 95681571 41 AAATTAAAGTTGATTCAGCCCCACGTTCAAGCAAGCAACAA AAGTTAAAGTTGATTCAGCCCCACGTTCAAGCAAGCAACAA < 41bp 1 0.482195655069285 1 0.0363313555717468 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95681551 chr12:95681533 synonymous SNV . 0 3 hm5C_associated_SNPs_9959 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644310544 1 0.999536711378912 hm5C_site_12310 DeepMRMD:1;iRNA_m5C:0.999536711378912 12311 chr12 95681554 95681554 1 + C G rs12424550 95681551 + 95681531 95681571 41 AAATTAAAGTTGATTCAGCCCCACGTTCAAGCAAGCAACAA AAATTAAAGTTGATTCAGCCCCAGGTTCAAGCAAGCAACAA < 41bp 1 0.614465895274001 1 0.117347598075867 experiment 0.771068209451997 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95681551 chr12:95681554 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_9960 0 0 0 1 1 Endoplasmic reticulum 1 0.500231643925045 1 0.99953671214991 hm5C_site_12311 DeepMRMD:1;iRNA_m5C:0.99953671214991 12312 chr12 95693943 95693943 1 + G A rs17344738 95693942 + 95693922 95693962 41 TCTTTTTTTTTATTTGAAGCCGTGTTGAAATCCTTGTCTCC TCTTTTTTTTTATTTGAAGCCATGTTGAAATCCTTGTCTCC < 41bp 1 0.207395760687704 1 0.408587992191315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95693942 chr12:95693943 nonsynonymous SNV 0.963 2 22 hm5C_associated_SNPs_9961 0 0 1 3 1 Endoplasmic reticulum 1 0.500231643921158 1 0.999536712157683 hm5C_site_12312 DeepMRMD:1;iRNA_m5C:0.999536712157683 12313 chr12 98926748 98926748 1 + T C rs35998138 98926754 + 98926734 98926774 41 GGGCAGTACCGAACTACAGGCAGCTAAGAAAGTACATACTT GGGCAGTACCGAACCACAGGCAGCTAAGAAAGTACATACTT < 41bp 1 0.469580150690476 1 0.258861005306244 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98926754 chr12:98926748 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_9962 0 0 1 0 0 Ribosome 1 0.500231643730974 1 0.999536712538053 hm5C_site_12313 DeepMRMD:1;iRNA_m5C:0.999536712538053 12314 chr12 98941390 98941390 1 + G A rs144913822 98941402 + 98941382 98941422 41 GCAGGCCGGCCATTAGAACTCAGTGATTTCAGGATGGAGGA GCAGGCCGACCATTAGAACTCAGTGATTTCAGGATGGAGGA < 41bp 1 0.658522337902689 1 0.412046551704407 experiment 0.682955324194621 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98941402 chr12:98941390 synonymous SNV . 0 9 hm5C_associated_SNPs_9963 1 0 1 1 1 Ribosome 1 0.500231643932588 1 0.999536712134824 hm5C_site_12314 DeepMRMD:1;iRNA_m5C:0.999536712134824 not specified not specified 12315 chr12 98993624 98993624 1 + A G rs12297282 98993622 + 98993602 98993642 41 AATGACATGCATTTATGCTGCCATTTGTTACTATCAGGACT AATGACATGCATTTATGCTGCCGTTTGTTACTATCAGGACT < 41bp 1 0.0559233711244435 1 0.142075330018997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993622 chr12:98993624 . . 0 23 hm5C_associated_SNPs_9964 0 0 1 7 0 unknown 1 0.500231638741211 1 0.999536722517579 hm5C_site_12315 DeepMRMD:1;iRNA_m5C:0.999536722517579 12316 chr12 98993624 98993624 1 + A G rs12297282 98993641 + 98993621 98993661 41 GCCATTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT GCCGTTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT < 41bp 1 0.620136878511732 1 0.426465153694153 experiment 0.759726242976535 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993641 chr12:98993624 . . 0 4 hm5C_associated_SNPs_9965 0 0 1 7 0 unknown 1 0.500231645704149 1 0.999536708591702 hm5C_site_12316 DeepMRMD:1;iRNA_m5C:0.999536708591702 12317 chr12 98993643 98993643 1 + C G rs7955537 98993641 + 98993621 98993661 41 GCCATTTGTTACTATCAGGACTCGACTCGTGTGCGGACATT GCCATTTGTTACTATCAGGACTGGACTCGTGTGCGGACATT < 41bp 1 0.650553283682314 1 0.0865921378135681 experiment 0.698893432635373 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993641 chr12:98993643 . . 0 23 hm5C_associated_SNPs_9966 0 0 1 0 0 unknown 1 0.50023164272851 1 0.999536714542981 hm5C_site_12317 DeepMRMD:1;iRNA_m5C:0.999536714542981 12318 chr12 98993643 98993643 1 + C G rs7955537 98993654 + 98993634 98993674 41 ATCAGGACTCGACTCGTGTGCGGACATTTCTGTTAATAATG ATCAGGACTGGACTCGTGTGCGGACATTTCTGTTAATAATG < 41bp 1 0.181132281415482 1 0.171223282814026 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993654 chr12:98993643 . . 0 10 hm5C_associated_SNPs_9967 0 0 1 0 0 unknown 1 0.500231643696485 1 0.99953671260703 hm5C_site_12318 DeepMRMD:1;iRNA_m5C:0.99953671260703 12319 chr12 98993643 98993643 1 + C G rs7955537 98993658 + 98993638 98993678 41 GGACTCGACTCGTGTGCGGACATTTCTGTTAATAATGACAG GGACTGGACTCGTGTGCGGACATTTCTGTTAATAATGACAG < 41bp 1 0.0543396867986993 1 0.102393537759781 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA53 ENSG00000212443 ncRNA_exonic Human snoRNA chr12:98993658 chr12:98993643 . . 0 6 hm5C_associated_SNPs_9968 0 0 1 0 0 unknown 1 0.50023164384252 1 0.99953671231496 hm5C_site_12319 DeepMRMD:1;iRNA_m5C:0.99953671231496 12320 chr12 99127038 99127038 1 + G A rs185285999 99127026 + 99127006 99127046 41 GGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTG < 41bp 1 0.260832014676769 1 0.0493083298206329 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control APAF1 ENSG00000120868 UTR3 Human protein_coding chr12:99127026 chr12:99127038 . . 0 33 hm5C_associated_SNPs_9970 0 0 0 0 0 Nucleus 1 0.50023164392109 1 0.999536712157821 hm5C_site_12320 DeepMRMD:1;iRNA_m5C:0.999536712157821 12321 chr12 99127038 99127038 1 + G A rs185285999 99127027 + 99127007 99127047 41 GGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGG GGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGG < 41bp 1 0.61084084607876 1 0.198048889636993 experiment 0.77831830784248 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control APAF1 ENSG00000120868 UTR3 Human protein_coding chr12:99127027 chr12:99127038 . . 0 32 hm5C_associated_SNPs_9971 0 0 0 0 0 Nucleus 1 0.500231643893075 1 0.99953671221385 hm5C_site_12321 DeepMRMD:1;iRNA_m5C:0.99953671221385 12322 chr12 99127038 99127038 1 + G A rs185285999 99127029 + 99127009 99127049 41 TTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGA TTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGA < 41bp 1 0.490994714947712 1 0.601702272891998 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control APAF1 ENSG00000120868 UTR3 Human protein_coding chr12:99127029 chr12:99127038 . . 0 30 hm5C_associated_SNPs_9972 0 0 0 0 0 Nucleus 1 0.500231643921092 0.796595454216004 0.999536712157815 hm5C_site_12322 DeepMRMD:0.796595454216004;iRNA_m5C:0.999536712157815 12323 chr12 99127038 99127038 1 + G A rs185285999 99127032 + 99127012 99127052 41 AAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTA AAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTA < 41bp 1 0.076926409404774 1 0.193952858448029 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control APAF1 ENSG00000120868 UTR3 Human protein_coding chr12:99127032 chr12:99127038 . . 0 27 hm5C_associated_SNPs_9973 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12323 DeepMRMD:1;iRNA_m5C:0.999536712157815 12324 chr12 99127038 99127038 1 + G A rs185285999 99127033 + 99127013 99127053 41 AGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTAC AGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTAC < 41bp 1 0.297769077428913 1 0.413327038288116 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control APAF1 ENSG00000120868 UTR3 Human protein_coding chr12:99127033 chr12:99127038 . . 0 26 hm5C_associated_SNPs_9974 0 0 0 0 0 Nucleus 1 0.500231725892429 1 0.999536548215141 hm5C_site_12324 DeepMRMD:1;iRNA_m5C:0.999536548215141 12325 chr12 99127038 99127038 1 + G A rs185285999 99127035 + 99127015 99127055 41 CAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAG CAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAG < 41bp 1 0.43055218507902 1 0.142227530479431 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control APAF1 ENSG00000120868 UTR3 Human protein_coding chr12:99127035 chr12:99127038 . . 0 24 hm5C_associated_SNPs_9975 0 0 0 0 0 Nucleus 1 0.500270958513076 1 0.999458082973847 hm5C_site_12325 DeepMRMD:1;iRNA_m5C:0.999458082973847 12326 chr12 99127038 99127038 1 + G A rs185285999 99127036 + 99127016 99127056 41 AATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGG AATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGG < 41bp 1 0.183196143700908 1 0.357376933097839 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control APAF1 ENSG00000120868 UTR3 Human protein_coding chr12:99127036 chr12:99127038 . . 0 23 hm5C_associated_SNPs_9976 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12326 DeepMRMD:1;iRNA_m5C:0.999536712157815 12327 chr12 101674902 101674902 1 + A G rs78240090 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACGTTTGCTGAACGACTGGGGAATGTTAATATTGAT < 41bp 1 0.380270322492329 1 0.17942413687706 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674902 synonymous SNV . 0 8 hm5C_associated_SNPs_9977 0 0 1 0 2 Cytosol 1 0.50023164399392 1 0.999536712012159 hm5C_site_12327 DeepMRMD:1;iRNA_m5C:0.999536712012159 12328 chr12 101674913 101674913 1 + G A rs151017457 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATTTGCTGAACAACTGGGGAATGTTAATATTGAT < 41bp 1 0.412128028160402 1 0.294387340545654 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674913 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_9978 0 0 1 0 2 Cytosol 1 0.500231643921525 1 0.99953671215695 hm5C_site_12328 DeepMRMD:1;iRNA_m5C:0.99953671215695 12329 chr12 101680177 101680177 1 + G A rs139691544 101680176 + 101680156 101680196 41 GTTTTTTTTGACTATCACCTCGATCCTGGAGACTCAGGACA GTTTTTTTTGACTATCACCTCAATCCTGGAGACTCAGGACA < 41bp 1 0.0779099786049237 1 0.14086377620697 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101680176 chr12:101680177 synonymous SNV . 0 22 hm5C_associated_SNPs_9979 0 0 1 0 1 Cytosol 1 0.500231643990907 1 0.999536712018186 hm5C_site_12329 DeepMRMD:1;iRNA_m5C:0.999536712018186 12330 chr12 101780269 101780269 1 + C T rs3199856 101780249 + 101780229 101780269 41 ACTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTAC ACTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTAT < 41bp 1 0.346998571582847 1 0.103716284036636 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780249 chr12:101780269 . . 0 41 hm5C_associated_SNPs_9980 0 0 0 2 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12330 DeepMRMD:1;iRNA_m5C:0.999536712157815 12331 chr12 101780269 101780269 1 + C T rs3199856 101780251 + 101780231 101780271 41 TGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAG TGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAG < 41bp 1 0.384021243510172 1 0.130648493766785 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780251 chr12:101780269 . . 0 39 hm5C_associated_SNPs_9981 0 0 0 2 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12331 DeepMRMD:1;iRNA_m5C:0.999536712157815 12332 chr12 101780269 101780269 1 + C T rs3199856 101780252 + 101780232 101780272 41 GATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG GATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGG < 41bp 1 0.416958274490757 1 0.45288360118866 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780252 chr12:101780269 . . 0 38 hm5C_associated_SNPs_9982 0 0 0 2 0 Cytosol 1 0.500229514830283 1 0.999540970339434 hm5C_site_12332 DeepMRMD:1;iRNA_m5C:0.999540970339434 12333 chr12 101780269 101780269 1 + C T rs3199856 101780253 + 101780233 101780273 41 ATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGT ATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGT < 41bp 1 0.59478045031349 1 0.502937853336334 experiment 0.81043909937302 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 UTR3 Human protein_coding chr12:101780253 chr12:101780269 . . 0 37 hm5C_associated_SNPs_9983 0 0 0 2 0 Cytosol 1 0.500231643921092 0.994124293327332 0.999536712157815 hm5C_site_12333 DeepMRMD:0.994124293327332;iRNA_m5C:0.999536712157815 12334 chr12 102517804 102517804 1 + G A rs2036771 102517803 + 102517783 102517823 41 GGCATTGCAGCTTTCTATGGCGGAGAACAACAAACAGGTTG GGCATTGCAGCTTTCTATGGCAGAGAACAACAAACAGGTTG < 41bp 1 0.658786995227101 1 0.389066278934479 experiment 0.682426009545799 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARPBP ENSG00000185480 CDS Human protein_coding chr12:102517803 chr12:102517804 synonymous SNV . 0 22 hm5C_associated_SNPs_9986 0 0 1 0 1 chromatin 1 0.500231643923906 1 0.999536712152187 hm5C_site_12334 DeepMRMD:1;iRNA_m5C:0.999536712152187 12335 chr12 104324182 104324182 1 + C G rs2070908 104324198 + 104324178 104324218 41 CTTGCGGTGTAGTGGGCGGACCGCGCGGCTGGAGGTGTGAG CTTGGGGTGTAGTGGGCGGACCGCGCGGCTGGAGGTGTGAG < 41bp 1 0.637890729541478 1 0.548455238342285 experiment 0.724218540917045 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSP90B1 ENSG00000166598 UTR5 Human protein_coding chr12:104324198 chr12:104324182 . . 0 5 hm5C_associated_SNPs_9987 0 0 1 0 0 Nucleus 1 0.500231630341189 0.90308952331543 0.999536739317623 hm5C_site_12335 DeepMRMD:0.90308952331543;iRNA_m5C:0.999536739317623 12336 chr12 104327979 104327979 1 + C G rs6615 104327970 + 104327950 104327990 41 ATTGTCACTTCAAAACACAACAACGATACCCAGCACATCTG ATTGTCACTTCAAAACACAACAACGATACGCAGCACATCTG < 41bp 1 0.45334790961176 1 0.158398598432541 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104327970 chr12:104327979 synonymous SNV . 0 30 hm5C_associated_SNPs_9989 0 0 1 0 1 Nucleus 1 0.500231675966323 1 0.999536648067355 hm5C_site_12336 DeepMRMD:1;iRNA_m5C:0.999536648067355 12337 chr12 104378664 104378664 1 + G A rs140299122 104378675 + 104378655 104378695 41 CGTTCAAGAGGTGCAATATACATTTGACCTACAGCTTGCCC CGTTCAAGAAGTGCAATATACATTTGACCTACAGCTTGCCC < 41bp 1 0.198443027114784 1 0.0417838096618652 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TDG ENSG00000139372 CDS Human protein_coding chr12:104378675 chr12:104378664 synonymous SNV . 0 10 hm5C_associated_SNPs_9990 0 0 1 0 1 Cytosol 1 0.500231643902705 1 0.999536712194589 hm5C_site_12337 DeepMRMD:1;iRNA_m5C:0.999536712194589 12338 chr12 104720157 104720157 1 + A G rs34368560 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACGAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA < 41bp 1 0.247154327146668 1 0.0528908371925354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720157 synonymous SNV . 0 9 hm5C_associated_SNPs_9991 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_12338 DeepMRMD:1;iRNA_m5C:0.999536712157816 12339 chr12 104720178 104720178 1 + C T rs542165610 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACAAGAAAAATTGGCTTAGAAACTGTAGGGGTGAA < 41bp 1 0.168634035016367 1 0.0445185899734497 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720178 synonymous SNV . 0 30 hm5C_associated_SNPs_9992 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12339 DeepMRMD:1;iRNA_m5C:0.999536712157815 12340 chr12 104743461 104743461 1 + C T rs35232644 104743465 + 104743445 104743485 41 GAGGATTCTATCTCAGCTGTCTTTTCTAACTGTGTAGGTTG GAGGATTCTATCTCAGTTGTCTTTTCTAACTGTGTAGGTTG < 41bp 1 0.0973001457041548 1 0.0268073976039886 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TXNRD1 ENSG00000198431 UTR3 Human protein_coding chr12:104743465 chr12:104743461 . . 0 17 hm5C_associated_SNPs_9993 0 0 1 0 0 Ribosome 1 0.500231644614821 1 0.999536710770358 hm5C_site_12340 DeepMRMD:1;iRNA_m5C:0.999536710770358 12341 chr12 105519861 105519861 1 + C T rs200763691 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGTACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG < 41bp 1 0.169987134787714 1 0.118732005357742 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519861 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_9994 1 0 1 0 2 unknown 1 0.500231232148879 1 0.999537535702241 hm5C_site_12341 DeepMRMD:1;iRNA_m5C:0.999537535702241 not specified not specified 12342 chr12 105519873 105519873 1 + G A rs35267264 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGCACATAGTATTCAGTCAATTTTTGCAAATGTAGAAG < 41bp 1 0.234329230900091 1 0.162818759679794 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519873 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_9995 2 0 1 0 2 unknown 1 0.500230151589016 1 0.999539696821968 hm5C_site_12342 DeepMRMD:1;iRNA_m5C:0.999539696821968 Inborn genetic diseases Inborn genetic diseases 12343 chr12 105519873 105519873 1 + G A rs35267264 105519885 + 105519865 105519905 41 TAGTATTCGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG TAGTATTCAGTCAATTTTTGCAAATGTAGAAGCCAAACTTG < 41bp 1 0.274004295337448 1 0.282398879528046 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519885 chr12:105519873 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_9996 2 0 1 0 2 unknown 1 0.500232501446272 1 0.999534997107457 hm5C_site_12343 DeepMRMD:1;iRNA_m5C:0.999534997107457 Inborn genetic diseases Inborn genetic diseases 12344 chr12 107712757 107712757 1 + G A rs549405532 107712763 + 107712743 107712783 41 TGGTGAGAACGCTGGAGGATCTGACGCTGGACTCGGGTTAT TGGTGAGAACGCTGAAGGATCTGACGCTGGACTCGGGTTAT < 41bp 1 0.373947009329267 1 0.229306817054749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BTBD11 ENSG00000151136 CDS Human protein_coding chr12:107712763 chr12:107712757 nonsynonymous SNV 1.000 5 15 hm5C_associated_SNPs_9997 0 0 0 0 0 cytosol 1 0.500231644061583 1 0.999536711876833 hm5C_site_12344 DeepMRMD:1;iRNA_m5C:0.999536711876833 12345 chr12 107713087 107713087 1 + C T rs377707357 107713086 + 107713066 107713106 41 GGCCCGGCGGTCCCCGGCGGCCTGCCCAAGGACGCGCTGGC GGCCCGGCGGTCCCCGGCGGCTTGCCCAAGGACGCGCTGGC < 41bp 1 0.285314420467299 1 0.187457740306854 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BTBD11 ENSG00000151136 CDS Human protein_coding chr12:107713086 chr12:107713087 synonymous SNV . 0 22 hm5C_associated_SNPs_9998 0 0 0 0 0 cytosol 1 0.500231643921004 1 0.999536712157992 hm5C_site_12345 DeepMRMD:1;iRNA_m5C:0.999536712157992 12346 chr12 107713087 107713087 1 + C T rs377707357 107713090 + 107713070 107713110 41 CGGCGGTCCCCGGCGGCCTGCCCAAGGACGCGCTGGCCAAG CGGCGGTCCCCGGCGGCTTGCCCAAGGACGCGCTGGCCAAG < 41bp 1 0.555198622008655 1 0.215003073215485 experiment 0.88960275598269 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BTBD11 ENSG00000151136 CDS Human protein_coding chr12:107713090 chr12:107713087 synonymous SNV . 0 18 hm5C_associated_SNPs_9999 0 0 0 0 0 cytosol 1 0.50023164382018 1 0.99953671235964 hm5C_site_12346 DeepMRMD:1;iRNA_m5C:0.99953671235964 12347 chr12 107713087 107713087 1 + C T rs377707357 107713091 + 107713071 107713111 41 GGCGGTCCCCGGCGGCCTGCCCAAGGACGCGCTGGCCAAGC GGCGGTCCCCGGCGGCTTGCCCAAGGACGCGCTGGCCAAGC < 41bp 1 0.46253811589787 1 0.888178646564484 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control BTBD11 ENSG00000151136 CDS Human protein_coding chr12:107713091 chr12:107713087 synonymous SNV . 0 17 hm5C_associated_SNPs_10000 0 0 0 0 0 cytosol 1 0.500231643921092 0.223642706871032 0.999536712157815 hm5C_site_12347 DeepMRMD:0.223642706871032;iRNA_m5C:0.999536712157815 12348 chr12 108086634 108086634 1 + C T rs77478466 108086614 + 108086594 108086634 41 CTGAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTAC CTGAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTAT < 41bp 1 0.490148403875699 1 0.210632681846619 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086614 chr12:108086634 synonymous SNV . 0 41 hm5C_associated_SNPs_10001 0 0 1 0 2 Ribosome 1 0.50023201670994 1 0.999535966580119 hm5C_site_12348 DeepMRMD:1;iRNA_m5C:0.999535966580119 12349 chr12 108910962 108910962 1 + C T rs2303634 108910952 + 108910932 108910972 41 CAGGAGCAAACCGGACAGGGCGCAGCATGCCGCCACCAAGT CAGGAGCAAACCGGACAGGGCGCAGCATGCTGCCACCAAGT < 41bp 1 0.493233234488245 1 0.301897019147873 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FICD ENSG00000198855 CDS Human protein_coding chr12:108910952 chr12:108910962 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_10003 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12349 DeepMRMD:1;iRNA_m5C:0.999536712157815 12350 chr12 109539760 109539760 1 + C A rs376918741 109539764 + 109539744 109539784 41 GACCTAATCAAGCTCACGGGCTCTGCTTTAGTGTTCAAAGG GACCTAATCAAGCTCAAGGGCTCTGCTTTAGTGTTCAAAGG < 41bp 1 0.311741747933699 1 0.22651219367981 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109539764 chr12:109539760 nonsynonymous SNV 0.856 4 17 hm5C_associated_SNPs_10004 0 0 1 0 2 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_12350 DeepMRMD:1;iRNA_m5C:0.999536712157813 Survival in pancreatic cancer 12351 chr12 109547675 109547675 1 + G T rs576935575 109547670 + 109547650 109547690 41 TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG TACAGACGGCTCATCCCTCCCCTTTTTCAGTGTATAGAGGG < 41bp 1 0.0372063891330166 1 0.0481332838535309 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547670 chr12:109547675 nonsynonymous SNV 0.790 1 26 hm5C_associated_SNPs_10005 0 0 1 0 1 Ribosome 1 0.500231643927067 1 0.999536712145866 hm5C_site_12351 DeepMRMD:1;iRNA_m5C:0.999536712145866 12352 chr12 109704169 109704169 1 + C T rs201813488 109704157 + 109704137 109704177 41 GTCTACCATGGACAGCCCGGCCTCCACCTGACCGTGGCCCG GTCTACCATGGACAGCCCGGCCTCCACCTGACTGTGGCCCG < 41bp 1 0.0384260037961606 1 0.167115807533264 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ACACB ENSG00000076555 UTR3 Human protein_coding chr12:109704157 chr12:109704169 . . 0 33 hm5C_associated_SNPs_10006 0 0 0 0 0 Nucleus 1 0.50023164392109 1 0.99953671215782 hm5C_site_12352 DeepMRMD:1;iRNA_m5C:0.99953671215782 12353 chr12 109704177 109704177 1 + G A rs2075262 109704157 + 109704137 109704177 41 GTCTACCATGGACAGCCCGGCCTCCACCTGACCGTGGCCCG GTCTACCATGGACAGCCCGGCCTCCACCTGACCGTGGCCCA < 41bp 1 0.0346334057323366 1 0.17627090215683 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ACACB ENSG00000076555 UTR3 Human protein_coding chr12:109704157 chr12:109704177 . . 0 41 hm5C_associated_SNPs_10007 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12353 DeepMRMD:1;iRNA_m5C:0.999536712157815 12354 chr12 110456175 110456175 1 + A G rs2302689 110456173 + 110456153 110456193 41 CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATC CCTTGGTTTCTAGAATATGCCCGAATGATGTCTGTCGCATC < 41bp 1 0.553909594172367 1 0.38287228345871 experiment 0.892180811655266 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456173 chr12:110456175 synonymous SNV . 0 23 hm5C_associated_SNPs_10008 0 0 0 0 1 chromatin 1 0.500231644248348 1 0.999536711503304 hm5C_site_12354 DeepMRMD:1;iRNA_m5C:0.999536711503304 12355 chr12 110456175 110456175 1 + A G rs2302689 110456174 + 110456154 110456194 41 CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATCT CTTGGTTTCTAGAATATGCCCGAATGATGTCTGTCGCATCT < 41bp 1 0.403970208386793 1 0.137713670730591 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456174 chr12:110456175 synonymous SNV . 0 22 hm5C_associated_SNPs_10009 0 0 0 0 1 chromatin 1 0.50023164387371 1 0.999536712252581 hm5C_site_12355 DeepMRMD:1;iRNA_m5C:0.999536712252581 12356 chr12 110474070 110474070 1 + T C rs2287174 110474069 + 110474049 110474089 41 ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCGAAT ACATTTGTCTTTGCCAGGAACCTTCAGGACCAGCTTCGAAT < 41bp 1 0.0132239305707759 1 0.0408380031585693 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110474069 chr12:110474070 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_10010 0 0 1 0 2 chromatin 1 0.500231647395166 1 0.999536705209669 hm5C_site_12356 DeepMRMD:1;iRNA_m5C:0.999536705209669 12357 chr12 110784860 110784860 1 + G A rs180855540 110784845 + 110784825 110784865 41 CCCCACCCCACCCCACCTCTCCCCACCTTACCCCCGCCCCG CCCCACCCCACCCCACCTCTCCCCACCTTACCCCCACCCCG < 41bp 1 0.31600639584957 1 0.542409956455231 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATP2A2 ENSG00000174437 UTR3 Human protein_coding chr12:110784845 chr12:110784860 . . 0 36 hm5C_associated_SNPs_10011 0 0 1 0 0 Nucleus 1 0.50023164392109 0.915180087089538 0.99953671215782 hm5C_site_12357 DeepMRMD:0.915180087089538;iRNA_m5C:0.99953671215782 12358 chr12 110785936 110785936 1 + G A rs116445475 110785935 + 110785915 110785955 41 CTATTGCTAAAATGAGGGTTCGCAGCTGCCAGGAGTCATCC CTATTGCTAAAATGAGGGTTCACAGCTGCCAGGAGTCATCC < 41bp 1 0.434345921240443 1 0.0437119007110596 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP2A2 ENSG00000174437 UTR3 Human protein_coding chr12:110785935 chr12:110785936 . . 0 22 hm5C_associated_SNPs_10012 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12358 DeepMRMD:1;iRNA_m5C:0.999536712157815 12359 chr12 111744751 111744751 1 + G A rs200854950 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCAGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA < 41bp 1 0.257959047699659 1 0.0796433687210083 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744751 synonymous SNV . 0 4 hm5C_associated_SNPs_10013 0 0 0 0 1 exosome 1 0.500231643921099 1 0.999536712157803 hm5C_site_12359 DeepMRMD:1;iRNA_m5C:0.999536712157803 12360 chr12 111744751 111744751 1 + G A rs200854950 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCAGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG < 41bp 1 0.292466444051311 1 0.284753024578094 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744751 synonymous SNV . 0 3 hm5C_associated_SNPs_10014 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12360 DeepMRMD:1;iRNA_m5C:0.999536712157815 12361 chr12 111744770 111744770 1 + G A rs199624287 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCGGGCCCTCGGCTGGAGGCCACGCTGGCCTCCAAGGACA < 41bp 1 0.172467293471746 1 0.0570217669010162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744770 nonsynonymous SNV 0.186 1 23 hm5C_associated_SNPs_10015 0 0 0 0 1 exosome 1 0.50023164445594 1 0.99953671108812 hm5C_site_12361 DeepMRMD:1;iRNA_m5C:0.99953671108812 12362 chr12 111744770 111744770 1 + G A rs199624287 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCGGGCCCTCGGCTGGAGGCCACGCTGGCCTCCAAGGACAG < 41bp 1 0.252381513902945 1 0.215933829545975 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744770 nonsynonymous SNV 0.186 1 22 hm5C_associated_SNPs_10016 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12362 DeepMRMD:1;iRNA_m5C:0.999536712157815 12363 chr12 111744770 111744770 1 + G A rs199624287 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCCACGCTGGCCTCCAAGGACAGGGAGATCC < 41bp 1 0.025218229679735 1 0.0758098959922791 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744770 nonsynonymous SNV 0.186 1 14 hm5C_associated_SNPs_10017 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12363 DeepMRMD:1;iRNA_m5C:0.999536712157815 12364 chr12 111744770 111744770 1 + G A rs199624287 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCCACGCTGGCCTCCAAGGACAGGGAGATCCT < 41bp 1 0.477084518573207 1 0.970301032066345 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744770 nonsynonymous SNV 0.186 1 13 hm5C_associated_SNPs_10018 0 0 0 0 1 exosome 1 0.500231643941603 0.05939793586731 0.999536712116794 hm5C_site_12364 DeepMRMD:0.05939793586731;iRNA_m5C:0.999536712116794 12365 chr12 111744770 111744770 1 + G A rs199624287 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCCACGCTGGCCTCCAAGGACAGGGAGATCCTGC < 41bp 1 0.244266678491152 1 0.724150419235229 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744770 nonsynonymous SNV 0.186 1 11 hm5C_associated_SNPs_10019 0 0 0 0 1 exosome 1 0.500181910242394 0.551699161529542 0.999636179515212 hm5C_site_12365 DeepMRMD:0.551699161529542;iRNA_m5C:0.999636179515212 12366 chr12 111744770 111744770 1 + G A rs199624287 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCCACGCTGGCCTCCAAGGACAGGGAGATCCTGCG < 41bp 1 0.341889097185199 1 0.713708519935608 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744770 nonsynonymous SNV 0.186 1 10 hm5C_associated_SNPs_10020 0 0 0 0 1 exosome 1 0.500231643921092 0.572582960128784 0.999536712157815 hm5C_site_12366 DeepMRMD:0.572582960128784;iRNA_m5C:0.999536712157815 12367 chr12 111884608 111884608 1 + T A rs3184504 111884617 + 111884597 111884637 41 AGGAGGTCCGGTGGTGCACACGGCTTGAGATGCCTGACAAC AGGAGGTCCGGAGGTGCACACGGCTTGAGATGCCTGACAAC < 41bp 1 0.609088317979883 1 0.646842837333679 experiment 0.781823364040234 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111884617 chr12:111884608 nonsynonymous SNV 0.074 0 12 hm5C_associated_SNPs_10021 0 1 1 0 1 Ribosome 1 0.500231645673338 0.706314325332642 0.999536708653323 hm5C_site_12367 DeepMRMD:0.706314325332642;iRNA_m5C:0.999536708653323 12368 chr12 111884619 111884619 1 + G A rs143256866 111884617 + 111884597 111884637 41 AGGAGGTCCGGTGGTGCACACGGCTTGAGATGCCTGACAAC AGGAGGTCCGGTGGTGCACACGACTTGAGATGCCTGACAAC < 41bp 1 0.45257923397087 1 0.253947228193283 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111884617 chr12:111884619 synonymous SNV . 0 23 hm5C_associated_SNPs_10022 0 0 1 0 1 Ribosome 1 0.500231693627823 1 0.999536612744354 hm5C_site_12368 DeepMRMD:1;iRNA_m5C:0.999536612744354 12369 chr12 111885999 111885999 1 + C T rs150476570 111886014 + 111885994 111886034 41 TGCAGCACCTGGAGCATGAGCCTGTGAATCGAGCCCGGGAC TGCAGTACCTGGAGCATGAGCCTGTGAATCGAGCCCGGGAC < 41bp 1 0.193341685553161 1 0.284860789775848 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111886014 chr12:111885999 nonsynonymous SNV 0.802 0 6 hm5C_associated_SNPs_10023 0 0 1 0 0 Ribosome 1 0.500249923180547 1 0.999500153638906 hm5C_site_12369 DeepMRMD:1;iRNA_m5C:0.999500153638906 12370 chr12 111886024 111886024 1 + G A rs201102821 111886014 + 111885994 111886034 41 TGCAGCACCTGGAGCATGAGCCTGTGAATCGAGCCCGGGAC TGCAGCACCTGGAGCATGAGCCTGTGAATCAAGCCCGGGAC < 41bp 1 0.198583116040376 1 0.108611285686493 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111886014 chr12:111886024 nonsynonymous SNV 0.594 0 31 hm5C_associated_SNPs_10024 0 0 1 0 0 Ribosome 1 0.500231780121432 1 0.999536439757136 hm5C_site_12370 DeepMRMD:1;iRNA_m5C:0.999536439757136 12371 chr12 111887974 111887974 1 + G A rs11065905 111887981 + 111887961 111888001 41 AGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTA AGGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTA < 41bp 1 0.0502913161557011 1 0.0868801772594452 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH2B3 ENSG00000111252 UTR3 Human protein_coding chr12:111887981 chr12:111887974 . . 0 14 hm5C_associated_SNPs_10025 0 0 1 0 0 Ribosome 1 0.50023015084001 1 0.99953969831998 hm5C_site_12371 DeepMRMD:1;iRNA_m5C:0.99953969831998 12372 chr12 111887974 111887974 1 + G A rs11065905 111887982 + 111887962 111888002 41 GGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTAC GGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTAC < 41bp 1 0.220670437116934 1 0.0575457811355591 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH2B3 ENSG00000111252 UTR3 Human protein_coding chr12:111887982 chr12:111887974 . . 0 13 hm5C_associated_SNPs_10026 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12372 DeepMRMD:1;iRNA_m5C:0.999536712157815 12373 chr12 111887974 111887974 1 + G A rs11065905 111887984 + 111887964 111888004 41 TGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAG TGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.304165493256231 1 0.0736421048641205 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH2B3 ENSG00000111252 UTR3 Human protein_coding chr12:111887984 chr12:111887974 . . 0 11 hm5C_associated_SNPs_10027 0 0 1 0 0 Ribosome 1 0.500231644122827 1 0.999536711754346 hm5C_site_12373 DeepMRMD:1;iRNA_m5C:0.999536711754346 12374 chr12 111887974 111887974 1 + G A rs11065905 111887985 + 111887965 111888005 41 GATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGG GATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.336072390260412 1 0.193983048200607 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH2B3 ENSG00000111252 UTR3 Human protein_coding chr12:111887985 chr12:111887974 . . 0 10 hm5C_associated_SNPs_10028 0 0 1 0 0 Ribosome 1 0.500231643923121 1 0.999536712153757 hm5C_site_12374 DeepMRMD:1;iRNA_m5C:0.999536712153757 12375 chr12 111887974 111887974 1 + G A rs11065905 111887986 + 111887966 111888006 41 ATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGC ATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGC < 41bp 1 0.479615424330975 1 0.504068315029144 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH2B3 ENSG00000111252 UTR3 Human protein_coding chr12:111887986 chr12:111887974 . . 0 9 hm5C_associated_SNPs_10029 0 0 1 0 0 Ribosome 1 0.500231644486468 0.991863369941712 0.999536711027065 hm5C_site_12375 DeepMRMD:0.991863369941712;iRNA_m5C:0.999536711027065 12376 chr12 111888006 111888006 1 + C A rs143381779 111887986 + 111887966 111888006 41 ATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGC ATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGA < 41bp 1 0.537360065627418 1 0.494002521038055 experiment 0.925279868745163 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SH2B3 ENSG00000111252 UTR3 Human protein_coding chr12:111887986 chr12:111888006 . . 0 41 hm5C_associated_SNPs_10030 0 0 0 0 0 Ribosome 1 0.5002316439215 1 0.999536712157001 hm5C_site_12376 DeepMRMD:1;iRNA_m5C:0.999536712157001 12377 chr12 112229159 112229159 1 + C T rs543030829 112229155 + 112229135 112229175 41 ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATT ACATTGTGCCTGGATTTGGCCCCATGGCTGGGGCCGCCATT < 41bp 1 0.185851909233795 1 0.0331903994083405 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229155 chr12:112229159 nonsynonymous SNV 0.113 3 25 hm5C_associated_SNPs_10034 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12377 DeepMRMD:1;iRNA_m5C:0.999536712157815 12378 chr12 112229159 112229159 1 + C T rs543030829 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCATGGCTGGGGCCGCCATTG < 41bp 1 0.143849679632793 1 0.174940705299377 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229156 chr12:112229159 nonsynonymous SNV 0.113 3 24 hm5C_associated_SNPs_10035 0 0 1 0 2 chromatin 1 0.500231643904739 1 0.999536712190522 hm5C_site_12378 DeepMRMD:1;iRNA_m5C:0.999536712190522 12379 chr12 112229159 112229159 1 + C T rs543030829 112229157 + 112229137 112229177 41 ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGC ATTGTGCCTGGATTTGGCCCCATGGCTGGGGCCGCCATTGC < 41bp 1 0.488178352711689 1 0.2167147397995 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229157 chr12:112229159 nonsynonymous SNV 0.113 3 23 hm5C_associated_SNPs_10036 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12379 DeepMRMD:1;iRNA_m5C:0.999536712157815 12380 chr12 112229159 112229159 1 + C T rs543030829 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCATGGCTGGGGCCGCCATTGCCTCCCATGAGG < 41bp 1 0.151190990082055 1 0.102367401123047 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229168 chr12:112229159 nonsynonymous SNV 0.113 3 12 hm5C_associated_SNPs_10037 0 0 1 0 2 chromatin 1 0.500231643560901 1 0.999536712878198 hm5C_site_12380 DeepMRMD:1;iRNA_m5C:0.999536712878198 12381 chr12 112280207 112280207 1 + C T rs368690085 112280220 + 112280200 112280240 41 ACGGCGCCCCGGGTCGAGGCCCTCCCCGCCTCGCCCTACCC ACGGCGCTCCGGGTCGAGGCCCTCCCCGCCTCGCCCTACCC < 41bp 1 0.226274293992402 1 0.210416197776794 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAPKAPK5-AS1 ENSG00000234608 ncRNA_exonic Human lincRNA chr12:112280220 chr12:112280207 . . 0 8 hm5C_associated_SNPs_10039 0 0 0 0 0 unknown 1 0.500231643930671 1 0.999536712138658 hm5C_site_12381 DeepMRMD:1;iRNA_m5C:0.999536712138658 12382 chr12 112280207 112280207 1 + C T rs368690085 112280221 + 112280201 112280241 41 CGGCGCCCCGGGTCGAGGCCCTCCCCGCCTCGCCCTACCCC CGGCGCTCCGGGTCGAGGCCCTCCCCGCCTCGCCCTACCCC < 41bp 1 0.555355797669 1 0.418268620967865 experiment 0.889288404662001 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAPKAPK5-AS1 ENSG00000234608 ncRNA_exonic Human lincRNA chr12:112280221 chr12:112280207 . . 0 7 hm5C_associated_SNPs_10040 0 0 0 0 0 unknown 1 0.50023165659212 1 0.999536686815759 hm5C_site_12382 DeepMRMD:1;iRNA_m5C:0.999536686815759 12383 chr12 112280231 112280231 1 + C A rs4767067 112280220 + 112280200 112280240 41 ACGGCGCCCCGGGTCGAGGCCCTCCCCGCCTCGCCCTACCC ACGGCGCCCCGGGTCGAGGCCCTCCCCGCCTAGCCCTACCC < 41bp 1 0.211900311118707 1 0.0926047265529633 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAPKAPK5-AS1 ENSG00000234608 ncRNA_exonic Human lincRNA chr12:112280220 chr12:112280231 . . 0 32 hm5C_associated_SNPs_10041 0 0 0 0 0 unknown 1 0.500231644022136 1 0.999536711955727 hm5C_site_12383 DeepMRMD:1;iRNA_m5C:0.999536711955727 12384 chr12 112280231 112280231 1 + C A rs4767067 112280221 + 112280201 112280241 41 CGGCGCCCCGGGTCGAGGCCCTCCCCGCCTCGCCCTACCCC CGGCGCCCCGGGTCGAGGCCCTCCCCGCCTAGCCCTACCCC < 41bp 1 0.598547858436758 1 0.517884492874146 experiment 0.802904283126484 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAPKAPK5-AS1 ENSG00000234608 ncRNA_exonic Human lincRNA chr12:112280221 chr12:112280231 . . 0 31 hm5C_associated_SNPs_10042 0 0 0 0 0 unknown 1 0.500231643946284 0.964231014251708 0.999536712107432 hm5C_site_12384 DeepMRMD:0.964231014251708;iRNA_m5C:0.999536712107432 12385 chr12 112280327 112280327 1 + C T rs551575055 112280326 + 112280306 112280346 41 CCTGTCCCCAGGGGCCGCCGCCTCCGCCGCTGCTGCTGCCG CCTGTCCCCAGGGGCCGCCGCTTCCGCCGCTGCTGCTGCCG < 41bp 1 0.371172681651362 1 0.234799176454544 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPKAPK5-AS1 ENSG00000234608 ncRNA_exonic Human lincRNA chr12:112280326 chr12:112280327 . . 0 22 hm5C_associated_SNPs_10043 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12385 DeepMRMD:1;iRNA_m5C:0.999536712157815 12386 chr12 112460749 112460749 1 + A G rs7114 112460730 + 112460710 112460750 41 AGAGAGGAGAGAGGAGTGTACTGCCCAGGTCTTTGACAGAT AGAGAGGAGAGAGGAGTGTACTGCCCAGGTCTTTGACAGGT < 41bp 1 0.525966280789401 1 0.112075328826904 experiment 0.948067438421198 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ERP29 ENSG00000089248 UTR3 Human protein_coding chr12:112460730 chr12:112460749 . . 0 40 hm5C_associated_SNPs_10044 0 1 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12386 DeepMRMD:1;iRNA_m5C:0.999536712157815 12387 chr12 112579920 112579920 1 + A G rs61743643 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAGTAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA < 41bp 1 0.292087766993461 1 0.429946810007095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579920 nonsynonymous SNV 0.895 0 3 hm5C_associated_SNPs_10045 0 0 1 1 1 Cytosol 1 0.500231719654005 1 0.999536560691989 hm5C_site_12387 DeepMRMD:1;iRNA_m5C:0.999536560691989 12388 chr12 112579945 112579945 1 + G A rs61740854 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAATAGAGGCCAACAGCCCCCCAAAGAAGGTGGTGAAGAGA < 41bp 1 0.264796631311866 1 0.351034134626389 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579945 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_10046 0 0 0 1 1 Cytosol 1 0.500231619282279 1 0.999536761435442 hm5C_site_12388 DeepMRMD:1;iRNA_m5C:0.999536761435442 HDL cholesterol levels 12389 chr12 112856826 112856826 1 + G A rs531915358 112856829 + 112856809 112856849 41 CGCGTCCGGTCCCGAGCGGGCCTCCCTCGGGCCAGCCCGAT CGCGTCCGGTCCCGAGCAGGCCTCCCTCGGGCCAGCCCGAT < 41bp 1 0.31337911527898 1 0.0994118452072144 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 UTR5 Human protein_coding chr12:112856829 chr12:112856826 . . 0 18 hm5C_associated_SNPs_10047 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12389 DeepMRMD:1;iRNA_m5C:0.999536712157815 12390 chr12 112856826 112856826 1 + G A rs531915358 112856830 + 112856810 112856850 41 GCGTCCGGTCCCGAGCGGGCCTCCCTCGGGCCAGCCCGATG GCGTCCGGTCCCGAGCAGGCCTCCCTCGGGCCAGCCCGATG < 41bp 1 0.592757883401184 1 0.206408023834229 experiment 0.814484233197632 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPN11 ENSG00000179295 UTR5 Human protein_coding chr12:112856830 chr12:112856826 . . 0 17 hm5C_associated_SNPs_10048 0 0 1 0 0 Ribosome 1 0.500231643923281 1 0.999536712153437 hm5C_site_12390 DeepMRMD:1;iRNA_m5C:0.999536712153437 12391 chr12 112856826 112856826 1 + G A rs531915358 112856832 + 112856812 112856852 41 GTCCGGTCCCGAGCGGGCCTCCCTCGGGCCAGCCCGATGTG GTCCGGTCCCGAGCAGGCCTCCCTCGGGCCAGCCCGATGTG < 41bp 1 0.306335241178096 1 0.0603794753551483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN11 ENSG00000179295 UTR5 Human protein_coding chr12:112856832 chr12:112856826 . . 0 15 hm5C_associated_SNPs_10049 0 0 1 0 0 Ribosome 1 0.500231051013758 1 0.999537897972485 hm5C_site_12391 DeepMRMD:1;iRNA_m5C:0.999537897972485 12392 chr12 112915755 112915755 1 + G A rs535800148 112915765 + 112915745 112915785 41 GACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGAT GACTTTTGGCAGATGGTGTTCCAAGAAAACTCCCGAGTGAT < 41bp 1 0.251271901122231 1 0.241689234972 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915765 chr12:112915755 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_10050 1 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12392 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 12393 chr12 113388598 113388598 1 + G A rs115666428 113388604 + 113388584 113388624 41 GGACCAGGGGCCCCGCCGCGCAGAGATCCTTGATGAGATGC GGACCAGGGGCCCCACCGCGCAGAGATCCTTGATGAGATGC < 41bp 1 0.552109202340708 1 0.557494163513184 experiment 0.895781595318583 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113388604 chr12:113388598 nonsynonymous SNV 0.002 0 15 hm5C_associated_SNPs_10052 0 0 0 0 0 Nucleus 1 0.500231638224288 0.885011672973632 0.999536723551423 hm5C_site_12393 DeepMRMD:0.885011672973632;iRNA_m5C:0.999536723551423 12394 chr12 113596736 113596736 1 + G A rs2305901 113596717 - 113596697 113596737 41 GCGCCTTCGGCCGGGGTGCCCGCTCCAAGAAGGGCAAGATG GTGCCTTCGGCCGGGGTGCCCGCTCCAAGAAGGGCAAGATG < 41bp 1 0.303406432849639 1 0.341778516769409 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX54 ENSG00000123064 CDS Human protein_coding chr12:113596717 chr12:113596736 synonymous SNV . 0 2 hm5C_associated_SNPs_10053 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12394 DeepMRMD:1;iRNA_m5C:0.999536712157815 12395 chr12 113596736 113596736 1 + G A rs2305901 113596718 - 113596698 113596738 41 GGCGCCTTCGGCCGGGGTGCCCGCTCCAAGAAGGGCAAGAT GGTGCCTTCGGCCGGGGTGCCCGCTCCAAGAAGGGCAAGAT < 41bp 1 0.25079188108683 1 0.415078520774841 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX54 ENSG00000123064 CDS Human protein_coding chr12:113596718 chr12:113596736 synonymous SNV . 0 3 hm5C_associated_SNPs_10054 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12395 DeepMRMD:1;iRNA_m5C:0.999536712157815 12396 chr12 113629637 113629637 1 + G A rs73208734 113629651 + 113629631 113629671 41 CATCAGGGTTGCCTATGGGGCCACGGCGACAGGTATGGCCC CATCAGAGTTGCCTATGGGGCCACGGCGACAGGTATGGCCC < 41bp 1 0.387731177282451 1 0.411594271659851 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RITA1 ENSG00000257286 ncRNA_intronic Human antisense chr12:113629651 chr12:113629637 . . 0 7 hm5C_associated_SNPs_10055 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12396 DeepMRMD:1;iRNA_m5C:0.999536712157815 12397 chr12 113629655 113629655 1 + G A rs11832314 113629651 + 113629631 113629671 41 CATCAGGGTTGCCTATGGGGCCACGGCGACAGGTATGGCCC CATCAGGGTTGCCTATGGGGCCACAGCGACAGGTATGGCCC < 41bp 1 0.460527821273932 1 0.413739532232285 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RITA1 ENSG00000257286 ncRNA_intronic Human antisense chr12:113629651 chr12:113629655 . . 0 25 hm5C_associated_SNPs_10057 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12397 DeepMRMD:1;iRNA_m5C:0.999536712157815 12398 chr12 113629655 113629655 1 + G A rs11832314 113629652 + 113629632 113629672 41 ATCAGGGTTGCCTATGGGGCCACGGCGACAGGTATGGCCCC ATCAGGGTTGCCTATGGGGCCACAGCGACAGGTATGGCCCC < 41bp 1 0.525245473076376 1 0.463913440704346 experiment 0.949509053847247 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RITA1 ENSG00000257286 ncRNA_intronic Human antisense chr12:113629652 chr12:113629655 . . 0 24 hm5C_associated_SNPs_10058 0 0 1 0 0 Ribosome 1 0.500235471479405 1 0.999529057041191 hm5C_site_12398 DeepMRMD:1;iRNA_m5C:0.999529057041191 12399 chr12 113629657 113629657 1 + C T rs16942608 113629651 + 113629631 113629671 41 CATCAGGGTTGCCTATGGGGCCACGGCGACAGGTATGGCCC CATCAGGGTTGCCTATGGGGCCACGGTGACAGGTATGGCCC < 41bp 1 0.428353574281361 1 0.365147292613983 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RITA1 ENSG00000257286 ncRNA_intronic Human antisense chr12:113629651 chr12:113629657 . . 0 27 hm5C_associated_SNPs_10059 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12399 DeepMRMD:1;iRNA_m5C:0.999536712157815 12400 chr12 113864999 113864999 1 + C T rs139219594 113864992 + 113864972 113865012 41 GGCACAACCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTC GGCACAACCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTC < 41bp 1 0.245249095574013 1 0.188811302185059 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113864992 chr12:113864999 . . 0 28 hm5C_associated_SNPs_10061 0 0 0 0 1 Nucleus 1 0.500231643921778 1 0.999536712156445 hm5C_site_12400 DeepMRMD:1;iRNA_m5C:0.999536712156445 12401 chr12 113864999 113864999 1 + C T rs139219594 113864995 + 113864975 113865015 41 ACAACCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAG ACAACCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAG < 41bp 1 0.0517960297728534 1 0.0274234712123871 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113864995 chr12:113864999 . . 0 25 hm5C_associated_SNPs_10062 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12401 DeepMRMD:1;iRNA_m5C:0.999536712157815 12402 chr12 113864999 113864999 1 + C T rs139219594 113864996 + 113864976 113865016 41 CAACCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGT CAACCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGT < 41bp 1 0.158383473068965 1 0.0478968322277069 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113864996 chr12:113864999 . . 0 24 hm5C_associated_SNPs_10063 0 0 0 0 1 Nucleus 1 0.500232191040344 1 0.999535617919312 hm5C_site_12402 DeepMRMD:1;iRNA_m5C:0.999535617919312 12403 chr12 113864999 113864999 1 + C T rs139219594 113864998 + 113864978 113865018 41 ACCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGA ACCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGA < 41bp 1 0.275538834772532 1 0.0654022991657257 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113864998 chr12:113864999 . . 0 22 hm5C_associated_SNPs_10064 0 0 0 0 1 Nucleus 1 0.500231643889315 1 0.999536712221369 hm5C_site_12403 DeepMRMD:1;iRNA_m5C:0.999536712221369 12404 chr12 113864999 113864999 1 + C T rs139219594 113865001 + 113864981 113865021 41 TTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTC TTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTC < 41bp 1 0.029486996535287 1 0.0331837236881256 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113865001 chr12:113864999 . . 0 19 hm5C_associated_SNPs_10065 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12404 DeepMRMD:1;iRNA_m5C:0.999536712157815 12405 chr12 113864999 113864999 1 + C T rs139219594 113865002 + 113864982 113865022 41 TGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCT TGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCT < 41bp 1 0.119729900406669 1 0.331430792808533 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113865002 chr12:113864999 . . 0 18 hm5C_associated_SNPs_10066 0 0 0 0 1 Nucleus 1 0.500231642709422 1 0.999536714581156 hm5C_site_12405 DeepMRMD:1;iRNA_m5C:0.999536714581156 12406 chr12 113864999 113864999 1 + C T rs139219594 113865004 + 113864984 113865024 41 GCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCC GCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCC < 41bp 1 0.382296138471533 1 0.235004723072052 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113865004 chr12:113864999 . . 0 16 hm5C_associated_SNPs_10067 0 0 0 0 1 Nucleus 1 0.500230833275949 1 0.999538333448103 hm5C_site_12406 DeepMRMD:1;iRNA_m5C:0.999538333448103 12407 chr12 113864999 113864999 1 + C T rs139219594 113865005 + 113864985 113865025 41 CTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCT CTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCT < 41bp 1 0.261418458083575 1 0.243060976266861 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113865005 chr12:113864999 . . 0 15 hm5C_associated_SNPs_10068 0 0 0 0 1 Nucleus 1 0.500231745654237 1 0.999536508691526 hm5C_site_12407 DeepMRMD:1;iRNA_m5C:0.999536508691526 12408 chr12 113864999 113864999 1 + C T rs139219594 113865006 + 113864986 113865026 41 TCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTG TCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTG < 41bp 1 0.442509529298028 1 0.612951517105103 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDSL ENSG00000139410 UTR5 Human protein_coding chr12:113865006 chr12:113864999 . . 0 14 hm5C_associated_SNPs_10069 0 0 0 0 1 Nucleus 1 0.500230631603758 0.774096965789794 0.999538736792485 hm5C_site_12408 DeepMRMD:0.774096965789794;iRNA_m5C:0.999538736792485 12409 chr12 113867023 113867023 1 + C T rs143423751 113867026 + 113867006 113867046 41 CTGGGCATTCCTGCCACCATCGTGCTCCCCGAGAGCACCTC CTGGGCATTCCTGCCACTATCGTGCTCCCCGAGAGCACCTC < 41bp 1 0.608506402640971 1 0.393528819084167 experiment 0.782987194718059 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDSL ENSG00000139410 CDS Human protein_coding chr12:113867026 chr12:113867023 synonymous SNV . 0 18 hm5C_associated_SNPs_10070 0 0 0 0 2 Nucleus 1 0.500233346220136 1 0.999533307559729 hm5C_site_12409 DeepMRMD:1;iRNA_m5C:0.999533307559729 12410 chr12 117290433 117290433 1 + G A rs16947055 117290441 + 117290421 117290461 41 CTGGTTTTTATCGGAAAGATCATCCTGCCTGCAGATGCTGT CTGGTTTTTATCAGAAAGATCATCCTGCCTGCAGATGCTGT < 41bp 1 0.0599581743860279 1 0.0455616414546967 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNFT2 ENSG00000135119 UTR3 Human protein_coding chr12:117290441 chr12:117290433 . . 0 13 hm5C_associated_SNPs_10071 0 0 1 0 0 Ribosome 1 0.500231645391532 1 0.999536709216935 hm5C_site_12410 DeepMRMD:1;iRNA_m5C:0.999536709216935 12411 chr12 117348771 117348771 1 + C T rs565170875 117348786 + 117348766 117348806 41 GGACACTTCCCTGGGCGGGACTGTCTCGTGGCACCCGGTGG GGACATTTCCCTGGGCGGGACTGTCTCGTGGCACCCGGTGG < 41bp 1 0.289640371450426 1 0.167130500078201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXW8 ENSG00000174989 UTR5 Human protein_coding chr12:117348786 chr12:117348771 . . 0 6 hm5C_associated_SNPs_10072 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12411 DeepMRMD:1;iRNA_m5C:0.999536712157815 12412 chr12 118465820 118465820 1 + T C rs5745873 118465804 + 118465784 118465824 41 GGGTTGGCACTGCATGATATCCTGACAGAGATACACTTGTT GGGTTGGCACTGCATGATATCCTGACAGAGATACACCTGTT < 41bp 1 0.539534791261351 1 0.114154487848282 experiment 0.920930417477299 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RFC5 ENSG00000111445 CDS Human protein_coding chr12:118465804 chr12:118465820 synonymous SNV . 0 37 hm5C_associated_SNPs_10073 0 0 1 0 3 Ribosome 1 0.50023168720457 1 0.999536625590859 hm5C_site_12412 DeepMRMD:1;iRNA_m5C:0.999536625590859 12413 chr12 120531849 120531849 1 + T A rs145671221 120531860 + 120531840 120531880 41 CCAGAGGGGTCTGTGGTCAGCCACCCCACCTTGAGGGCAGC CCAGAGGGGACTGTGGTCAGCCACCCCACCTTGAGGGCAGC < 41bp 1 0.200592485967159 1 0.0828035175800323 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICDL1 ENSG00000135127 UTR3 Human protein_coding chr12:120531860 chr12:120531849 . . 0 10 hm5C_associated_SNPs_10074 0 0 0 0 0 chromatin 1 0.500231643921091 1 0.999536712157817 hm5C_site_12413 DeepMRMD:1;iRNA_m5C:0.999536712157817 12414 chr12 120531849 120531849 1 + T A rs145671221 120531861 + 120531841 120531881 41 CAGAGGGGTCTGTGGTCAGCCACCCCACCTTGAGGGCAGCA CAGAGGGGACTGTGGTCAGCCACCCCACCTTGAGGGCAGCA < 41bp 1 0.406612163118739 1 0.0832512676715851 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICDL1 ENSG00000135127 UTR3 Human protein_coding chr12:120531861 chr12:120531849 . . 0 9 hm5C_associated_SNPs_10075 0 0 0 0 0 chromatin 1 0.50023172728905 1 0.9995365454219 hm5C_site_12414 DeepMRMD:1;iRNA_m5C:0.9995365454219 12415 chr12 120898044 120898044 1 + G A rs548199 120898045 + 120898025 120898065 41 TGGAAGACATTATTTATCTGCCTTTAACTCCCCCCAAAGGA TGGAAGACATTATTTATCTACCTTTAACTCCCCCCAAAGGA < 41bp 1 0.0182766479810884 1 0.0539238154888153 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GATC ENSG00000257218 UTR3 Human protein_coding chr12:120898045 chr12:120898044 . . 0 20 hm5C_associated_SNPs_10076 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12415 DeepMRMD:1;iRNA_m5C:0.999536712157815 12416 chr12 120898046 120898046 1 + C T rs77885026 120898045 + 120898025 120898065 41 TGGAAGACATTATTTATCTGCCTTTAACTCCCCCCAAAGGA TGGAAGACATTATTTATCTGCTTTTAACTCCCCCCAAAGGA < 41bp 1 0.0397627856427734 1 0.0455041825771332 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GATC ENSG00000257218 UTR3 Human protein_coding chr12:120898045 chr12:120898046 . . 0 22 hm5C_associated_SNPs_10077 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12416 DeepMRMD:1;iRNA_m5C:0.999536712157815 12417 chr12 120898058 120898058 1 + C A rs185444465 120898045 + 120898025 120898065 41 TGGAAGACATTATTTATCTGCCTTTAACTCCCCCCAAAGGA TGGAAGACATTATTTATCTGCCTTTAACTCCCCACAAAGGA < 41bp 1 0.0143040210576536 1 0.059346079826355 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GATC ENSG00000257218 UTR3 Human protein_coding chr12:120898045 chr12:120898058 . . 0 34 hm5C_associated_SNPs_10078 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_12417 DeepMRMD:1;iRNA_m5C:0.999536712157814 12418 chr12 121135958 121135958 1 + A T rs144771428 121135954 + 121135934 121135974 41 TCAGCTTGGGCTGGAGCAGTCAATATAGGATCTCAGGCCAG TCAGCTTGGGCTGGAGCAGTCAATTTAGGATCTCAGGCCAG < 41bp 1 0.324569593225039 1 0.42089056968689 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MLEC ENSG00000256364 ncRNA_intronic Human antisense chr12:121135954 chr12:121135958 . . 0 25 hm5C_associated_SNPs_10079 0 0 1 0 0 Ribosome 1 0.500231643920988 1 0.999536712158025 hm5C_site_12418 DeepMRMD:1;iRNA_m5C:0.999536712158025 12419 chr12 121660787 121660787 1 + T C rs25643 121660807 + 121660787 121660827 41 TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG CGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG < 41bp 1 0.583589497207267 1 0.579563081264496 experiment 0.832821005585466 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660807 chr12:121660787 synonymous SNV . 0 1 hm5C_associated_SNPs_10080 0 0 0 0 2 Endoplasmic reticulum 1 0.500231647406983 0.840873837471008 0.999536705186033 hm5C_site_12419 DeepMRMD:0.840873837471008;iRNA_m5C:0.999536705186033 12420 chr12 121660804 121660804 1 + T C rs141459292 121660807 + 121660787 121660827 41 TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG TGTCAAGACGTGTGAGGCGGCGGCCTGGTGCCCGGTGGAGG < 41bp 1 0.485082420683449 1 0.495354324579239 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660807 chr12:121660804 nonsynonymous SNV 0.935 4 18 hm5C_associated_SNPs_10081 0 0 1 0 2 Endoplasmic reticulum 1 0.500231646562305 1 0.999536706875389 hm5C_site_12420 DeepMRMD:1;iRNA_m5C:0.999536706875389 12421 chr12 121660820 121660820 1 + G A rs188674773 121660807 + 121660787 121660827 41 TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGG TGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCAGTGGAGG < 41bp 1 0.540982364034117 1 0.537108600139618 experiment 0.918035271931766 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121660807 chr12:121660820 synonymous SNV . 0 34 hm5C_associated_SNPs_10082 0 0 1 0 2 Endoplasmic reticulum 1 0.500228764402024 0.925782799720764 0.999542471195953 hm5C_site_12421 DeepMRMD:0.925782799720764;iRNA_m5C:0.999542471195953 12422 chr12 122215259 122215259 1 + C T rs73413720 122215240 + 122215220 122215260 41 TATGTTGCCCAGGCTGGTCTCCAACTCATGGGCTCAACTCA TATGTTGCCCAGGCTGGTCTCCAACTCATGGGCTCAACTTA < 41bp 1 0.0336130492703469 1 0.385080516338348 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM120B ENSG00000188735 UTR3 Human protein_coding chr12:122215240 chr12:122215259 . . 0 40 hm5C_associated_SNPs_10083 0 0 1 0 0 Ribosome 1 0.500231643949353 1 0.999536712101294 hm5C_site_12422 DeepMRMD:1;iRNA_m5C:0.999536712101294 12423 chr12 122216622 122216622 1 + A G rs3741590 122216631 - 122216611 122216651 41 TTTTCTGTGGACTGTTCCCCCCACTGTGGTAGGACAGGACT TTTTCTGTGGACTGTTCCCCCCACTGTGGCAGGACAGGACT < 41bp 1 0.287684962183147 1 0.239741832017899 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOF;TMEM120B ENSG00000139725;ENSG00000188735 UTR3 Human other chr12:122216631 chr12:122216622 . . 0 30 hm5C_associated_SNPs_10084 0 0 1 0 0 unknown 1 0.500231643921137 1 0.999536712157726 hm5C_site_12423 DeepMRMD:1;iRNA_m5C:0.999536712157726 12424 chr12 122216629 122216629 1 + T C rs3741589 122216631 - 122216611 122216651 41 TTTTCTGTGGACTGTTCCCCCCACTGTGGTAGGACAGGACT TTTTCTGTGGACTGTTCCCCCCGCTGTGGTAGGACAGGACT < 41bp 1 0.362796500544374 1 0.199169725179672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOF;TMEM120B ENSG00000139725;ENSG00000188735 UTR3 Human other chr12:122216631 chr12:122216629 . . 0 23 hm5C_associated_SNPs_10085 0 0 1 0 0 unknown 1 0.50023164392095 1 0.9995367121581 hm5C_site_12424 DeepMRMD:1;iRNA_m5C:0.9995367121581 12425 chr12 122260540 122260540 1 + C T rs192950528 122260559 + 122260539 122260579 41 CCGGAGCCCCTTGCCGAGGACCACCCCCCGCATACTCCAGG CTGGAGCCCCTTGCCGAGGACCACCCCCCGCATACTCCAGG < 41bp 1 0.0238615870530303 1 0.0504000782966614 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122260559 chr12:122260540 nonsynonymous SNV 0.045 0 2 hm5C_associated_SNPs_10087 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12425 DeepMRMD:1;iRNA_m5C:0.999536712157815 12426 chr12 122260547 122260547 1 + C G rs114351527 122260559 + 122260539 122260579 41 CCGGAGCCCCTTGCCGAGGACCACCCCCCGCATACTCCAGG CCGGAGCCGCTTGCCGAGGACCACCCCCCGCATACTCCAGG < 41bp 1 0.0320918380251375 1 0.0661792755126953 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122260559 chr12:122260547 synonymous SNV . 0 9 hm5C_associated_SNPs_10088 0 0 1 0 0 chromatin 1 0.500231643781066 1 0.999536712437868 hm5C_site_12426 DeepMRMD:1;iRNA_m5C:0.999536712437868 12427 chr12 122260549 122260549 1 + T C rs58801491 122260559 + 122260539 122260579 41 CCGGAGCCCCTTGCCGAGGACCACCCCCCGCATACTCCAGG CCGGAGCCCCCTGCCGAGGACCACCCCCCGCATACTCCAGG < 41bp 1 0.0243832930530807 1 0.0610147714614868 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122260559 chr12:122260549 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_10089 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12427 DeepMRMD:1;iRNA_m5C:0.999536712157815 12428 chr12 122260562 122260562 1 + C A rs374510760 122260559 + 122260539 122260579 41 CCGGAGCCCCTTGCCGAGGACCACCCCCCGCATACTCCAGG CCGGAGCCCCTTGCCGAGGACCAACCCCCGCATACTCCAGG < 41bp 1 0.0194566762579952 1 0.0578855574131012 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122260559 chr12:122260562 nonsynonymous SNV 0.145 0 24 hm5C_associated_SNPs_10090 0 0 1 0 0 chromatin 1 0.500231643921364 1 0.999536712157272 hm5C_site_12428 DeepMRMD:1;iRNA_m5C:0.999536712157272 12429 chr12 122260635 122260635 1 + G C rs200348800 122260646 + 122260626 122260666 41 GCCACACCAGGCGGGGAGCCCCCGCTATCAGGGGGCAGCAG GCCACACCACGCGGGGAGCCCCCGCTATCAGGGGGCAGCAG < 41bp 1 0.236463420205717 1 0.269602000713348 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122260646 chr12:122260635 nonsynonymous SNV 0.752 3 10 hm5C_associated_SNPs_10091 0 0 0 0 0 chromatin 1 0.500231643912859 1 0.999536712174282 hm5C_site_12429 DeepMRMD:1;iRNA_m5C:0.999536712174282 12430 chr12 122260635 122260635 1 + G C rs200348800 122260647 + 122260627 122260667 41 CCACACCAGGCGGGGAGCCCCCGCTATCAGGGGGCAGCAGT CCACACCACGCGGGGAGCCCCCGCTATCAGGGGGCAGCAGT < 41bp 1 0.155571817580884 1 0.147717744112015 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122260647 chr12:122260635 nonsynonymous SNV 0.752 3 9 hm5C_associated_SNPs_10092 0 0 0 0 0 chromatin 1 0.500232605443834 1 0.999534789112331 hm5C_site_12430 DeepMRMD:1;iRNA_m5C:0.999534789112331 12431 chr12 122260635 122260635 1 + G C rs200348800 122260648 + 122260628 122260668 41 CACACCAGGCGGGGAGCCCCCGCTATCAGGGGGCAGCAGTG CACACCACGCGGGGAGCCCCCGCTATCAGGGGGCAGCAGTG < 41bp 1 0.484079392707401 1 0.871098458766937 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122260648 chr12:122260635 nonsynonymous SNV 0.752 3 8 hm5C_associated_SNPs_10093 0 0 0 0 0 chromatin 1 0.500231643921092 0.257803082466126 0.999536712157815 hm5C_site_12431 DeepMRMD:0.257803082466126;iRNA_m5C:0.999536712157815 12432 chr12 122260638 122260638 1 + G A rs140259604 122260646 + 122260626 122260666 41 GCCACACCAGGCGGGGAGCCCCCGCTATCAGGGGGCAGCAG GCCACACCAGGCAGGGAGCCCCCGCTATCAGGGGGCAGCAG < 41bp 1 0.190760561158436 1 0.266721159219742 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122260646 chr12:122260638 nonsynonymous SNV 0.893 2 13 hm5C_associated_SNPs_10094 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12432 DeepMRMD:1;iRNA_m5C:0.999536712157815 12433 chr12 122260638 122260638 1 + G A rs140259604 122260647 + 122260627 122260667 41 CCACACCAGGCGGGGAGCCCCCGCTATCAGGGGGCAGCAGT CCACACCAGGCAGGGAGCCCCCGCTATCAGGGGGCAGCAGT < 41bp 1 0.153492084636305 1 0.121913939714432 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122260647 chr12:122260638 nonsynonymous SNV 0.893 2 12 hm5C_associated_SNPs_10095 0 0 0 0 0 chromatin 1 0.500231643924166 1 0.999536712151668 hm5C_site_12433 DeepMRMD:1;iRNA_m5C:0.999536712151668 12434 chr12 122260638 122260638 1 + G A rs140259604 122260648 + 122260628 122260668 41 CACACCAGGCGGGGAGCCCCCGCTATCAGGGGGCAGCAGTG CACACCAGGCAGGGAGCCCCCGCTATCAGGGGGCAGCAGTG < 41bp 1 0.523786909632367 1 0.870547533035278 experiment 0.952426180735266 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122260648 chr12:122260638 nonsynonymous SNV 0.893 2 11 hm5C_associated_SNPs_10096 0 0 0 0 0 chromatin 1 0.500231643921092 0.258904933929444 0.999536712157815 hm5C_site_12434 DeepMRMD:0.258904933929444;iRNA_m5C:0.999536712157815 12435 chr12 122268150 122268150 1 + C T rs74482265 122268148 + 122268128 122268168 41 CGGGGGACCCTCAACTAGGCCCCGGCACCAGACTCAAAGGA CGGGGGACCCTCAACTAGGCCCTGGCACCAGACTCAAAGGA < 41bp 1 0.0810949444590608 1 0.122502326965332 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SETD1B ENSG00000139718 UTR3 Human protein_coding chr12:122268148 chr12:122268150 . . 0 23 hm5C_associated_SNPs_10097 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12435 DeepMRMD:1;iRNA_m5C:0.999536712157815 12436 chr12 122268150 122268150 1 + C T rs74482265 122268149 + 122268129 122268169 41 GGGGGACCCTCAACTAGGCCCCGGCACCAGACTCAAAGGAT GGGGGACCCTCAACTAGGCCCTGGCACCAGACTCAAAGGAT < 41bp 1 0.192973705748326 1 0.183310300111771 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SETD1B ENSG00000139718 UTR3 Human protein_coding chr12:122268149 chr12:122268150 . . 0 22 hm5C_associated_SNPs_10098 0 0 0 0 0 chromatin 1 0.500231643926731 1 0.999536712146538 hm5C_site_12436 DeepMRMD:1;iRNA_m5C:0.999536712146538 12437 chr12 122268164 122268164 1 + A C rs375869712 122268148 + 122268128 122268168 41 CGGGGGACCCTCAACTAGGCCCCGGCACCAGACTCAAAGGA CGGGGGACCCTCAACTAGGCCCCGGCACCAGACTCACAGGA < 41bp 1 0.22773707163991 1 0.23034480214119 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SETD1B ENSG00000139718 UTR3 Human protein_coding chr12:122268148 chr12:122268164 . . 0 37 hm5C_associated_SNPs_10099 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12437 DeepMRMD:1;iRNA_m5C:0.999536712157815 12438 chr12 122268164 122268164 1 + A C rs375869712 122268149 + 122268129 122268169 41 GGGGGACCCTCAACTAGGCCCCGGCACCAGACTCAAAGGAT GGGGGACCCTCAACTAGGCCCCGGCACCAGACTCACAGGAT < 41bp 1 0.103317483685765 1 0.458770036697388 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SETD1B ENSG00000139718 UTR3 Human protein_coding chr12:122268149 chr12:122268164 . . 0 36 hm5C_associated_SNPs_10100 0 0 1 0 0 chromatin 1 0.500231643921113 1 0.999536712157775 hm5C_site_12438 DeepMRMD:1;iRNA_m5C:0.999536712157775 12439 chr12 122626381 122626381 1 + G A rs11057509 122626400 + 122626380 122626420 41 CGCATGAGATGCCAGGAGACCCTTCCCTGCCCATGGAGAGT CACATGAGATGCCAGGAGACCCTTCCCTGCCCATGGAGAGT < 41bp 1 0.00684627212283341 1 0.0597214698791504 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MLXIP ENSG00000175727 UTR3 Human protein_coding chr12:122626400 chr12:122626381 . . 0 2 hm5C_associated_SNPs_10101 0 0 1 0 0 chromatin 1 0.500231644196804 1 0.999536711606392 hm5C_site_12439 DeepMRMD:1;iRNA_m5C:0.999536711606392 12440 chr12 123028739 123028739 1 + A G rs61751320 123028737 + 123028717 123028757 41 AATCAAGTCCAGTTTTATTTCTACTGAAAATTATCATACTC AATCAAGTCCAGTTTTATTTCTGCTGAAAATTATCATACTC < 41bp 1 0.407907558407711 1 0.583759665489197 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123028737 chr12:123028739 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_10102 0 0 1 0 2 Nucleus 1 0.500195251048723 0.832480669021606 0.999609497902553 hm5C_site_12440 DeepMRMD:0.832480669021606;iRNA_m5C:0.999609497902553 12441 chr12 123254143 123254143 1 + T C rs563078257 123254141 + 123254121 123254161 41 TCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTC TCGGCTCACTGCAACCTCCGCCCCCCGGGTTCAAGTGATTC < 41bp 1 0.253949929557032 1 0.101861625909805 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254141 chr12:123254143 . . 0 23 hm5C_associated_SNPs_10103 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12441 DeepMRMD:1;iRNA_m5C:0.999536712157815 12442 chr12 123254143 123254143 1 + T C rs563078257 123254142 + 123254122 123254162 41 CGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTCT CGGCTCACTGCAACCTCCGCCCCCCGGGTTCAAGTGATTCT < 41bp 1 0.316599900527536 1 0.0544401109218597 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254142 chr12:123254143 . . 0 22 hm5C_associated_SNPs_10104 0 0 0 0 0 Ribosome 1 0.500231643920831 1 0.999536712158339 hm5C_site_12442 DeepMRMD:1;iRNA_m5C:0.999536712158339 12443 chr12 123254143 123254143 1 + T C rs563078257 123254163 + 123254143 123254183 41 TCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTA CCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTA < 41bp 1 0.635176829986436 1 0.128864705562592 experiment 0.729646340027129 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254163 chr12:123254143 . . 0 1 hm5C_associated_SNPs_10106 0 0 0 0 0 Ribosome 1 0.50023164392112 1 0.99953671215776 hm5C_site_12443 DeepMRMD:1;iRNA_m5C:0.99953671215776 12444 chr12 123254147 123254147 1 + G A rs187727342 123254141 + 123254121 123254161 41 TCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTC TCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTC < 41bp 1 0.108968960709982 1 0.0891552567481995 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254141 chr12:123254147 . . 0 27 hm5C_associated_SNPs_10107 0 0 0 0 0 Ribosome 1 0.500231643921211 1 0.999536712157578 hm5C_site_12444 DeepMRMD:1;iRNA_m5C:0.999536712157578 12445 chr12 123254147 123254147 1 + G A rs187727342 123254142 + 123254122 123254162 41 CGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTCT CGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCT < 41bp 1 0.486843979970593 1 0.242388933897018 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254142 chr12:123254147 . . 0 26 hm5C_associated_SNPs_10108 0 0 0 0 0 Ribosome 1 0.500231643921089 1 0.999536712157821 hm5C_site_12445 DeepMRMD:1;iRNA_m5C:0.999536712157821 12446 chr12 123254147 123254147 1 + G A rs187727342 123254145 + 123254125 123254165 41 CTCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTCTCCT CTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCT < 41bp 1 0.626753483193385 1 0.199845880270004 experiment 0.74649303361323 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254145 chr12:123254147 . . 0 23 hm5C_associated_SNPs_10110 0 0 0 0 0 Ribosome 1 0.500231643900288 1 0.999536712199424 hm5C_site_12446 DeepMRMD:1;iRNA_m5C:0.999536712199424 12447 chr12 123254147 123254147 1 + G A rs187727342 123254163 + 123254143 123254183 41 TCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTA TCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTA < 41bp 1 0.620019257578004 1 0.115758717060089 experiment 0.759961484843991 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254163 chr12:123254147 . . 0 5 hm5C_associated_SNPs_10111 0 0 0 0 0 Ribosome 1 0.500231648057694 1 0.999536703884611 hm5C_site_12447 DeepMRMD:1;iRNA_m5C:0.999536703884611 12448 chr12 123254147 123254147 1 + G A rs187727342 123254167 + 123254147 123254187 41 GGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGGTG AGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGGTG < 41bp 1 0.4950822754713 1 0.0539590120315552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254167 chr12:123254147 . . 0 1 hm5C_associated_SNPs_10112 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12448 DeepMRMD:1;iRNA_m5C:0.999536712157815 12449 chr12 123254191 123254191 1 + T C rs560433077 123254173 + 123254153 123254193 41 AAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGGTGGGATTA AAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGGTGGGACTA < 41bp 1 0.204467030781077 1 0.126143127679825 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254173 chr12:123254191 . . 0 39 hm5C_associated_SNPs_10113 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12449 DeepMRMD:1;iRNA_m5C:0.999536712157815 12450 chr12 123254191 123254191 1 + T C rs560433077 123254174 + 123254154 123254194 41 AGTGATTCTCCTGCCTCAGCCTCCCAAGTAGGTGGGATTAC AGTGATTCTCCTGCCTCAGCCTCCCAAGTAGGTGGGACTAC < 41bp 1 0.664899581181543 1 0.562577605247498 experiment 0.670200837636914 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254174 chr12:123254191 . . 0 38 hm5C_associated_SNPs_10114 0 0 0 0 0 Ribosome 1 0.500238467308516 0.874844789505004 0.999523065382967 hm5C_site_12450 DeepMRMD:0.874844789505004;iRNA_m5C:0.999523065382967 12451 chr12 123254191 123254191 1 + T C rs560433077 123254177 + 123254157 123254197 41 GATTCTCCTGCCTCAGCCTCCCAAGTAGGTGGGATTACAGG GATTCTCCTGCCTCAGCCTCCCAAGTAGGTGGGACTACAGG < 41bp 1 0.465368841175082 1 0.465143501758575 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254177 chr12:123254191 . . 0 35 hm5C_associated_SNPs_10116 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12451 DeepMRMD:1;iRNA_m5C:0.999536712157815 12452 chr12 123254191 123254191 1 + T C rs560433077 123254198 + 123254178 123254218 41 CAAGTAGGTGGGATTACAGGCGCCCGCCACCACGCCCAGCT CAAGTAGGTGGGACTACAGGCGCCCGCCACCACGCCCAGCT < 41bp 1 0.630470952103282 1 0.499582976102829 experiment 0.739058095793435 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254198 chr12:123254191 . . 0 14 hm5C_associated_SNPs_10117 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12452 DeepMRMD:1;iRNA_m5C:0.999536712157815 12453 chr12 123254191 123254191 1 + T C rs560433077 123254201 + 123254181 123254221 41 GTAGGTGGGATTACAGGCGCCCGCCACCACGCCCAGCTAAT GTAGGTGGGACTACAGGCGCCCGCCACCACGCCCAGCTAAT < 41bp 1 0.313865797605809 1 0.092642068862915 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254201 chr12:123254191 . . 0 11 hm5C_associated_SNPs_10119 0 0 0 0 0 Ribosome 1 0.500231675501518 1 0.999536648996965 hm5C_site_12453 DeepMRMD:1;iRNA_m5C:0.999536648996965 12454 chr12 123254191 123254191 1 + T C rs560433077 123254204 + 123254184 123254224 41 GGTGGGATTACAGGCGCCCGCCACCACGCCCAGCTAATTTT GGTGGGACTACAGGCGCCCGCCACCACGCCCAGCTAATTTT < 41bp 1 0.293659391445892 1 0.14281690120697 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254204 chr12:123254191 . . 0 8 hm5C_associated_SNPs_10120 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12454 DeepMRMD:1;iRNA_m5C:0.999536712157815 12455 chr12 123254191 123254191 1 + T C rs560433077 123254207 + 123254187 123254227 41 GGGATTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTGT GGGACTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTGT < 41bp 1 0.488303276422983 1 0.275217175483704 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254207 chr12:123254191 . . 0 5 hm5C_associated_SNPs_10121 0 0 0 0 0 Ribosome 1 0.500231643263875 1 0.999536713472249 hm5C_site_12455 DeepMRMD:1;iRNA_m5C:0.999536713472249 12456 chr12 123254202 123254202 1 + C A rs552159709 123254200 + 123254180 123254220 41 AGTAGGTGGGATTACAGGCGCCCGCCACCACGCCCAGCTAA AGTAGGTGGGATTACAGGCGCCAGCCACCACGCCCAGCTAA < 41bp 1 0.66422979239794 1 0.552994668483734 experiment 0.671540415204119 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254200 chr12:123254202 . . 0 23 hm5C_associated_SNPs_10124 0 0 0 0 0 Ribosome 1 0.500231643797841 0.894010663032532 0.999536712404317 hm5C_site_12456 DeepMRMD:0.894010663032532;iRNA_m5C:0.999536712404317 12457 chr12 123254202 123254202 1 + C A rs552159709 123254201 + 123254181 123254221 41 GTAGGTGGGATTACAGGCGCCCGCCACCACGCCCAGCTAAT GTAGGTGGGATTACAGGCGCCAGCCACCACGCCCAGCTAAT < 41bp 1 0.560004214746147 1 0.297540962696075 experiment 0.879991570507706 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254201 chr12:123254202 . . 0 22 hm5C_associated_SNPs_10125 0 0 0 0 0 Ribosome 1 0.500231646558181 1 0.999536706883638 hm5C_site_12457 DeepMRMD:1;iRNA_m5C:0.999536706883638 12458 chr12 123254202 123254202 1 + C A rs552159709 123254204 + 123254184 123254224 41 GGTGGGATTACAGGCGCCCGCCACCACGCCCAGCTAATTTT GGTGGGATTACAGGCGCCAGCCACCACGCCCAGCTAATTTT < 41bp 1 0.344706307003081 1 0.203936457633972 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254204 chr12:123254202 . . 0 19 hm5C_associated_SNPs_10126 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12458 DeepMRMD:1;iRNA_m5C:0.999536712157815 12459 chr12 123254202 123254202 1 + C A rs552159709 123254207 + 123254187 123254227 41 GGGATTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTGT GGGATTACAGGCGCCAGCCACCACGCCCAGCTAATTTTTGT < 41bp 1 0.494216501121838 1 0.289694756269455 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254207 chr12:123254202 . . 0 16 hm5C_associated_SNPs_10127 0 0 0 0 0 Ribosome 1 0.500231714964987 1 0.999536570070026 hm5C_site_12459 DeepMRMD:1;iRNA_m5C:0.999536570070026 12460 chr12 123254202 123254202 1 + C A rs552159709 123254208 + 123254188 123254228 41 GGATTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTGTA GGATTACAGGCGCCAGCCACCACGCCCAGCTAATTTTTGTA < 41bp 1 0.687752554838926 1 0.550006806850433 experiment 0.624494890322147 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DENR ENSG00000139726 UTR3 Human protein_coding chr12:123254208 chr12:123254202 . . 0 15 hm5C_associated_SNPs_10128 0 0 0 0 0 Ribosome 1 0.500231643921092 0.899986386299134 0.999536712157815 hm5C_site_12460 DeepMRMD:0.899986386299134;iRNA_m5C:0.999536712157815 12461 chr12 123462962 123462962 1 + G A rs60641861 123462972 + 123462952 123462992 41 CCACATTCAGGCCAACAGACCATCCCTCCTTCCACAGAGGA CCACATTCAGACCAACAGACCATCCCTCCTTCCACAGAGGA < 41bp 1 0.0308016317659386 1 0.0766871273517609 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGFOD2 ENSG00000256028 ncRNA_exonic Human processed_transcript chr12:123462972 chr12:123462962 . . 0 11 hm5C_associated_SNPs_10131 0 0 1 0 1 Cytosol 1 0.500231643921221 1 0.999536712157558 hm5C_site_12461 DeepMRMD:1;iRNA_m5C:0.999536712157558 12462 chr12 124144395 124144395 1 + A C rs1051793 124144415 + 124144395 124144435 41 AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA CGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA < 41bp 1 0.364105177022496 1 0.0457051396369934 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144415 chr12:124144395 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_10132 0 1 1 0 2 Cytosol 1 0.500231647824773 1 0.999536704350455 hm5C_site_12462 DeepMRMD:1;iRNA_m5C:0.999536704350455 12463 chr12 124210782 124210782 1 + T A rs1399961 124210800 + 124210780 124210820 41 AGTGATTCTTTGTTGGATTACAGCTGTATGCAGAGGCTGGG AGAGATTCTTTGTTGGATTACAGCTGTATGCAGAGGCTGGG < 41bp 1 0.55726200405751 1 0.18140697479248 experiment 0.885475991884981 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124210800 chr12:124210782 nonsynonymous SNV 0.112 1 3 hm5C_associated_SNPs_10133 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920003 1 0.999536712159994 hm5C_site_12463 DeepMRMD:1;iRNA_m5C:0.999536712159994 12464 chr12 124243364 124243364 1 + T C rs146660715 124243354 + 124243334 124243374 41 GCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCAAAATA GCTGGGATTACAGGCGTGAGCCACCATGCCCGGCCAAAATA < 41bp 1 0.307310964933588 1 0.176341652870178 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 UTR3 Human protein_coding chr12:124243354 chr12:124243364 . . 0 31 hm5C_associated_SNPs_10134 1 0 0 1 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12464 DeepMRMD:1;iRNA_m5C:0.999536712157815 Cutis laxa, recessive Cutis laxa, recessive 12465 chr12 124243364 124243364 1 + T C rs146660715 124243358 + 124243338 124243378 41 GGATTACAGGCGTGAGCCACCATGCCTGGCCAAAATATGCA GGATTACAGGCGTGAGCCACCATGCCCGGCCAAAATATGCA < 41bp 1 0.189874300579575 1 0.411545813083649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 UTR3 Human protein_coding chr12:124243358 chr12:124243364 . . 0 27 hm5C_associated_SNPs_10135 1 0 0 1 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_12465 DeepMRMD:1;iRNA_m5C:0.999536712157815 Cutis laxa, recessive Cutis laxa, recessive 12466 chr12 124498464 124498464 1 + G A rs150261024 124498454 + 124498434 124498474 41 TGATACCCCTTCATTGATTACTGTGTATCAGTTCTTTGTTA TGATACCCCTTCATTGATTACTGTGTATCAATTCTTTGTTA < 41bp 1 0.206977730876072 1 0.0495319664478302 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF664 ENSG00000179195 UTR3 Human protein_coding chr12:124498454 chr12:124498464 . . 0 31 hm5C_associated_SNPs_10136 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12466 DeepMRMD:1;iRNA_m5C:0.999536712157815 12467 chr12 125424530 125424530 1 + T C rs140737361 125424522 + 125424502 125424542 41 ACAAGGGGTAGGGGATGTAGCTCAGTGGTAGAGCGCATGCT ACAAGGGGTAGGGGATGTAGCTCAGTGGCAGAGCGCATGCT < 41bp 1 0.695594207626385 1 0.215543299913406 experiment 0.608811584747229 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424522 chr12:125424530 . . 0 29 hm5C_associated_SNPs_10137 0 0 1 0 0 unknown 1 0.50023164392109 1 0.999536712157821 hm5C_site_12467 DeepMRMD:1;iRNA_m5C:0.999536712157821 12468 chr12 125424530 125424530 1 + T C rs140737361 125424524 + 125424504 125424544 41 AAGGGGTAGGGGATGTAGCTCAGTGGTAGAGCGCATGCTTT AAGGGGTAGGGGATGTAGCTCAGTGGCAGAGCGCATGCTTT < 41bp 1 0.589702547868333 1 0.420758605003357 experiment 0.820594904263333 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424524 chr12:125424530 . . 0 27 hm5C_associated_SNPs_10138 0 0 1 0 0 unknown 1 0.5002316439232 1 0.999536712153599 hm5C_site_12468 DeepMRMD:1;iRNA_m5C:0.999536712153599 12469 chr12 125424530 125424530 1 + T C rs140737361 125424535 + 125424515 125424555 41 GATGTAGCTCAGTGGTAGAGCGCATGCTTTGCACGTATGAG GATGTAGCTCAGTGGCAGAGCGCATGCTTTGCACGTATGAG < 41bp 1 0.324804130866617 1 0.145445108413696 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424535 chr12:125424530 . . 0 16 hm5C_associated_SNPs_10139 0 0 1 0 0 unknown 1 0.500231422289836 1 0.999537155420329 hm5C_site_12469 DeepMRMD:1;iRNA_m5C:0.999537155420329 12470 chr12 125424530 125424530 1 + T C rs140737361 125424537 + 125424517 125424557 41 TGTAGCTCAGTGGTAGAGCGCATGCTTTGCACGTATGAGGC TGTAGCTCAGTGGCAGAGCGCATGCTTTGCACGTATGAGGC < 41bp 1 0.32987980061504 1 0.275123059749603 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424537 chr12:125424530 . . 0 14 hm5C_associated_SNPs_10140 0 0 1 0 0 unknown 1 0.500232046715077 1 0.999535906569845 hm5C_site_12470 DeepMRMD:1;iRNA_m5C:0.999535906569845 12471 chr12 125424530 125424530 1 + T C rs140737361 125424541 + 125424521 125424561 41 GCTCAGTGGTAGAGCGCATGCTTTGCACGTATGAGGCCCCG GCTCAGTGGCAGAGCGCATGCTTTGCACGTATGAGGCCCCG < 41bp 1 0.359770948719966 1 0.0302781760692596 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424541 chr12:125424530 . . 0 10 hm5C_associated_SNPs_10141 0 0 1 0 0 unknown 1 0.500232373134482 1 0.999535253731036 hm5C_site_12471 DeepMRMD:1;iRNA_m5C:0.999535253731036 12472 chr12 125424530 125424530 1 + T C rs140737361 125424548 + 125424528 125424568 41 GGTAGAGCGCATGCTTTGCACGTATGAGGCCCCGGGTTCAA GGCAGAGCGCATGCTTTGCACGTATGAGGCCCCGGGTTCAA < 41bp 1 0.365628987370297 1 0.0634249150753021 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424548 chr12:125424530 . . 0 3 hm5C_associated_SNPs_10142 0 0 1 0 0 unknown 1 0.500231643972875 1 0.999536712054251 hm5C_site_12472 DeepMRMD:1;iRNA_m5C:0.999536712054251 12473 chr12 125424540 125424540 1 + G A rs536348255 125424522 + 125424502 125424542 41 ACAAGGGGTAGGGGATGTAGCTCAGTGGTAGAGCGCATGCT ACAAGGGGTAGGGGATGTAGCTCAGTGGTAGAGCGCATACT < 41bp 1 0.65751621900956 1 0.131622314453125 experiment 0.684967561980879 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424522 chr12:125424540 . . 0 39 hm5C_associated_SNPs_10143 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_12473 DeepMRMD:1;iRNA_m5C:0.999536712157816 12474 chr12 125424540 125424540 1 + G A rs536348255 125424524 + 125424504 125424544 41 AAGGGGTAGGGGATGTAGCTCAGTGGTAGAGCGCATGCTTT AAGGGGTAGGGGATGTAGCTCAGTGGTAGAGCGCATACTTT < 41bp 1 0.613190133327446 1 0.46743369102478 experiment 0.773619733345108 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424524 chr12:125424540 . . 0 37 hm5C_associated_SNPs_10144 0 0 1 0 0 unknown 1 0.500231643921124 1 0.999536712157751 hm5C_site_12474 DeepMRMD:1;iRNA_m5C:0.999536712157751 12475 chr12 125424540 125424540 1 + G A rs536348255 125424535 + 125424515 125424555 41 GATGTAGCTCAGTGGTAGAGCGCATGCTTTGCACGTATGAG GATGTAGCTCAGTGGTAGAGCGCATACTTTGCACGTATGAG < 41bp 1 0.270190934505343 1 0.223791688680649 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424535 chr12:125424540 . . 0 26 hm5C_associated_SNPs_10145 0 0 1 0 0 unknown 1 0.500231552243491 1 0.999536895513017 hm5C_site_12475 DeepMRMD:1;iRNA_m5C:0.999536895513017 12476 chr12 125424540 125424540 1 + G A rs536348255 125424537 + 125424517 125424557 41 TGTAGCTCAGTGGTAGAGCGCATGCTTTGCACGTATGAGGC TGTAGCTCAGTGGTAGAGCGCATACTTTGCACGTATGAGGC < 41bp 1 0.141124592633628 1 0.168158531188965 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424537 chr12:125424540 . . 0 24 hm5C_associated_SNPs_10146 0 0 1 0 0 unknown 1 0.500241893263191 1 0.999516213473618 hm5C_site_12476 DeepMRMD:1;iRNA_m5C:0.999516213473618 12477 chr12 125424540 125424540 1 + G A rs536348255 125424541 + 125424521 125424561 41 GCTCAGTGGTAGAGCGCATGCTTTGCACGTATGAGGCCCCG GCTCAGTGGTAGAGCGCATACTTTGCACGTATGAGGCCCCG < 41bp 1 0.384319168536328 1 0.040247917175293 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424541 chr12:125424540 . . 0 20 hm5C_associated_SNPs_10147 0 0 1 0 0 unknown 1 0.500231945218624 1 0.999536109562752 hm5C_site_12477 DeepMRMD:1;iRNA_m5C:0.999536109562752 12478 chr12 125424540 125424540 1 + G A rs536348255 125424548 + 125424528 125424568 41 GGTAGAGCGCATGCTTTGCACGTATGAGGCCCCGGGTTCAA GGTAGAGCGCATACTTTGCACGTATGAGGCCCCGGGTTCAA < 41bp 1 0.329865159170334 1 0.0657710134983063 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424548 chr12:125424540 . . 0 13 hm5C_associated_SNPs_10149 0 0 1 0 0 unknown 1 0.500231643919865 1 0.999536712160271 hm5C_site_12478 DeepMRMD:1;iRNA_m5C:0.999536712160271 12479 chr12 125424540 125424540 1 + G A rs536348255 125424557 + 125424537 125424577 41 CATGCTTTGCACGTATGAGGCCCCGGGTTCAATCCCCGGCA CATACTTTGCACGTATGAGGCCCCGGGTTCAATCCCCGGCA < 41bp 1 0.46296268328175 1 0.0895251929759979 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424557 chr12:125424540 . . 0 4 hm5C_associated_SNPs_10150 0 0 1 0 0 unknown 1 0.500231643921096 1 0.999536712157808 hm5C_site_12479 DeepMRMD:1;iRNA_m5C:0.999536712157808 12480 chr12 125424540 125424540 1 + G A rs536348255 125424558 + 125424538 125424578 41 ATGCTTTGCACGTATGAGGCCCCGGGTTCAATCCCCGGCAT ATACTTTGCACGTATGAGGCCCCGGGTTCAATCCCCGGCAT < 41bp 1 0.627341018430079 1 0.417722642421722 experiment 0.745317963139841 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424558 chr12:125424540 . . 0 3 hm5C_associated_SNPs_10151 0 0 1 0 0 unknown 1 0.500231643911522 1 0.999536712176956 hm5C_site_12480 DeepMRMD:1;iRNA_m5C:0.999536712176956 12481 chr12 125424540 125424540 1 + G A rs536348255 125424559 + 125424539 125424579 41 TGCTTTGCACGTATGAGGCCCCGGGTTCAATCCCCGGCATC TACTTTGCACGTATGAGGCCCCGGGTTCAATCCCCGGCATC < 41bp 1 0.444415201988961 1 0.472037583589554 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424559 chr12:125424540 . . 0 2 hm5C_associated_SNPs_10152 0 0 1 0 0 unknown 1 0.500231643921197 1 0.999536712157606 hm5C_site_12481 DeepMRMD:1;iRNA_m5C:0.999536712157606 12482 chr12 125424560 125424560 1 + C A rs184562645 125424541 + 125424521 125424561 41 GCTCAGTGGTAGAGCGCATGCTTTGCACGTATGAGGCCCCG GCTCAGTGGTAGAGCGCATGCTTTGCACGTATGAGGCCCAG < 41bp 1 0.376524347576125 1 0.0402990281581879 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424541 chr12:125424560 . . 0 40 hm5C_associated_SNPs_10154 0 0 1 0 0 unknown 1 0.500232762401356 1 0.999534475197288 hm5C_site_12482 DeepMRMD:1;iRNA_m5C:0.999534475197288 12483 chr12 125424560 125424560 1 + C A rs184562645 125424548 + 125424528 125424568 41 GGTAGAGCGCATGCTTTGCACGTATGAGGCCCCGGGTTCAA GGTAGAGCGCATGCTTTGCACGTATGAGGCCCAGGGTTCAA < 41bp 1 0.406109757683094 1 0.0434449017047882 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424548 chr12:125424560 . . 0 33 hm5C_associated_SNPs_10156 0 0 1 0 0 unknown 1 0.500231643523567 1 0.999536712952867 hm5C_site_12483 DeepMRMD:1;iRNA_m5C:0.999536712952867 12484 chr12 125424560 125424560 1 + C A rs184562645 125424557 + 125424537 125424577 41 CATGCTTTGCACGTATGAGGCCCCGGGTTCAATCCCCGGCA CATGCTTTGCACGTATGAGGCCCAGGGTTCAATCCCCGGCA < 41bp 1 0.424801742169186 1 0.116198778152466 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424557 chr12:125424560 . . 0 24 hm5C_associated_SNPs_10157 0 0 1 0 0 unknown 1 0.500231643924374 1 0.999536712151252 hm5C_site_12484 DeepMRMD:1;iRNA_m5C:0.999536712151252 12485 chr12 125424560 125424560 1 + C A rs184562645 125424558 + 125424538 125424578 41 ATGCTTTGCACGTATGAGGCCCCGGGTTCAATCCCCGGCAT ATGCTTTGCACGTATGAGGCCCAGGGTTCAATCCCCGGCAT < 41bp 1 0.591273345796154 1 0.497740238904953 experiment 0.817453308407692 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424558 chr12:125424560 . . 0 23 hm5C_associated_SNPs_10158 0 0 1 0 0 unknown 1 0.500231643921116 1 0.999536712157769 hm5C_site_12485 DeepMRMD:1;iRNA_m5C:0.999536712157769 12486 chr12 125424560 125424560 1 + C A rs184562645 125424566 + 125424546 125424586 41 CACGTATGAGGCCCCGGGTTCAATCCCCGGCATCTCCAGAC CACGTATGAGGCCCAGGGTTCAATCCCCGGCATCTCCAGAC < 41bp 1 0.129721487809496 1 0.0603587627410889 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424566 chr12:125424560 . . 0 15 hm5C_associated_SNPs_10160 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12486 DeepMRMD:1;iRNA_m5C:0.999536712157815 12487 chr12 125424560 125424560 1 + C A rs184562645 125424570 + 125424550 125424590 41 TATGAGGCCCCGGGTTCAATCCCCGGCATCTCCAGACTTTT TATGAGGCCCAGGGTTCAATCCCCGGCATCTCCAGACTTTT < 41bp 1 0.458391695111534 1 0.077065110206604 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424570 chr12:125424560 . . 0 11 hm5C_associated_SNPs_10161 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12487 DeepMRMD:1;iRNA_m5C:0.999536712157815 12488 chr12 125424560 125424560 1 + C A rs184562645 125424571 + 125424551 125424591 41 ATGAGGCCCCGGGTTCAATCCCCGGCATCTCCAGACTTTTC ATGAGGCCCAGGGTTCAATCCCCGGCATCTCCAGACTTTTC < 41bp 1 0.467971781859724 1 0.53925347328186 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424571 chr12:125424560 . . 0 10 hm5C_associated_SNPs_10162 0 0 1 0 0 unknown 1 0.500232055925388 0.92149305343628 0.999535888149225 hm5C_site_12488 DeepMRMD:0.92149305343628;iRNA_m5C:0.999535888149225 12489 chr12 125424560 125424560 1 + C A rs184562645 125424572 + 125424552 125424592 41 TGAGGCCCCGGGTTCAATCCCCGGCATCTCCAGACTTTTCC TGAGGCCCAGGGTTCAATCCCCGGCATCTCCAGACTTTTCC < 41bp 1 0.356887826122136 1 0.0961488485336304 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424572 chr12:125424560 . . 0 9 hm5C_associated_SNPs_10163 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12489 DeepMRMD:1;iRNA_m5C:0.999536712157815 12490 chr12 125424560 125424560 1 + C A rs184562645 125424576 + 125424556 125424596 41 GCCCCGGGTTCAATCCCCGGCATCTCCAGACTTTTCCGCCT GCCCAGGGTTCAATCCCCGGCATCTCCAGACTTTTCCGCCT < 41bp 1 0.126887909373167 1 0.0809346437454224 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424576 chr12:125424560 . . 0 5 hm5C_associated_SNPs_10164 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_12490 DeepMRMD:1;iRNA_m5C:0.999536712157815 12491 chr12 125424560 125424560 1 + C A rs184562645 125424579 + 125424559 125424599 41 CCGGGTTCAATCCCCGGCATCTCCAGACTTTTCCGCCTTTT CAGGGTTCAATCCCCGGCATCTCCAGACTTTTCCGCCTTTT < 41bp 1 0.568018843913301 1 0.454997181892395 experiment 0.863962312173399 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424579 chr12:125424560 . . 0 2 hm5C_associated_SNPs_10165 0 0 1 0 0 unknown 1 0.500231642986448 1 0.999536714027105 hm5C_site_12491 DeepMRMD:1;iRNA_m5C:0.999536714027105 12492 chr12 125424566 125424566 1 + C T rs112048799 125424548 + 125424528 125424568 41 GGTAGAGCGCATGCTTTGCACGTATGAGGCCCCGGGTTCAA GGTAGAGCGCATGCTTTGCACGTATGAGGCCCCGGGTTTAA < 41bp 1 0.390049540950405 1 0.0737228095531464 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424548 chr12:125424566 . . 0 39 hm5C_associated_SNPs_10167 0 0 1 0 0 unknown 1 0.500231643921816 1 0.999536712156369 hm5C_site_12492 DeepMRMD:1;iRNA_m5C:0.999536712156369 12493 chr12 125424566 125424566 1 + C T rs112048799 125424557 + 125424537 125424577 41 CATGCTTTGCACGTATGAGGCCCCGGGTTCAATCCCCGGCA CATGCTTTGCACGTATGAGGCCCCGGGTTTAATCCCCGGCA < 41bp 1 0.432191396938608 1 0.103576630353928 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424557 chr12:125424566 . . 0 30 hm5C_associated_SNPs_10168 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12493 DeepMRMD:1;iRNA_m5C:0.999536712157815 12494 chr12 125424566 125424566 1 + C T rs112048799 125424558 + 125424538 125424578 41 ATGCTTTGCACGTATGAGGCCCCGGGTTCAATCCCCGGCAT ATGCTTTGCACGTATGAGGCCCCGGGTTTAATCCCCGGCAT < 41bp 1 0.623326843130163 1 0.750597596168518 experiment 0.753346313739673 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424558 chr12:125424566 . . 0 29 hm5C_associated_SNPs_10169 0 0 1 0 0 unknown 1 0.500231643921093 0.498804807662964 0.999536712157814 hm5C_site_12494 DeepMRMD:0.498804807662964;iRNA_m5C:0.999536712157814 12495 chr12 125424566 125424566 1 + C T rs112048799 125424559 + 125424539 125424579 41 TGCTTTGCACGTATGAGGCCCCGGGTTCAATCCCCGGCATC TGCTTTGCACGTATGAGGCCCCGGGTTTAATCCCCGGCATC < 41bp 1 0.447355116265246 1 0.685613393783569 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424559 chr12:125424566 . . 0 28 hm5C_associated_SNPs_10170 0 0 1 0 0 unknown 1 0.500231643921092 0.628773212432862 0.999536712157815 hm5C_site_12495 DeepMRMD:0.628773212432862;iRNA_m5C:0.999536712157815 12496 chr12 125424566 125424566 1 + C T rs112048799 125424570 + 125424550 125424590 41 TATGAGGCCCCGGGTTCAATCCCCGGCATCTCCAGACTTTT TATGAGGCCCCGGGTTTAATCCCCGGCATCTCCAGACTTTT < 41bp 1 0.502371876293404 1 0.194154024124146 experiment 0.995256247413193 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424570 chr12:125424566 . . 0 17 hm5C_associated_SNPs_10172 0 0 1 0 0 unknown 1 0.50023164392112 1 0.999536712157761 hm5C_site_12496 DeepMRMD:1;iRNA_m5C:0.999536712157761 12497 chr12 125424566 125424566 1 + C T rs112048799 125424571 + 125424551 125424591 41 ATGAGGCCCCGGGTTCAATCCCCGGCATCTCCAGACTTTTC ATGAGGCCCCGGGTTTAATCCCCGGCATCTCCAGACTTTTC < 41bp 1 0.530757694551209 1 0.596005976200104 experiment 0.938484610897582 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424571 chr12:125424566 . . 0 16 hm5C_associated_SNPs_10173 0 0 1 0 0 unknown 1 0.50023164392109 0.807988047599792 0.99953671215782 hm5C_site_12497 DeepMRMD:0.807988047599792;iRNA_m5C:0.99953671215782 12498 chr12 125424566 125424566 1 + C T rs112048799 125424572 + 125424552 125424592 41 TGAGGCCCCGGGTTCAATCCCCGGCATCTCCAGACTTTTCC TGAGGCCCCGGGTTTAATCCCCGGCATCTCCAGACTTTTCC < 41bp 1 0.358941613646394 1 0.174361735582352 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424572 chr12:125424566 . . 0 15 hm5C_associated_SNPs_10174 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_12498 DeepMRMD:1;iRNA_m5C:0.999536712157815 12499 chr12 125424566 125424566 1 + C T rs112048799 125424576 + 125424556 125424596 41 GCCCCGGGTTCAATCCCCGGCATCTCCAGACTTTTCCGCCT GCCCCGGGTTTAATCCCCGGCATCTCCAGACTTTTCCGCCT < 41bp 1 0.111055423327203 1 0.106189787387848 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424576 chr12:125424566 . . 0 11 hm5C_associated_SNPs_10176 0 0 1 0 0 unknown 1 0.500231643920992 1 0.999536712158015 hm5C_site_12499 DeepMRMD:1;iRNA_m5C:0.999536712158015 12500 chr12 125424566 125424566 1 + C T rs112048799 125424579 + 125424559 125424599 41 CCGGGTTCAATCCCCGGCATCTCCAGACTTTTCCGCCTTTT CCGGGTTTAATCCCCGGCATCTCCAGACTTTTCCGCCTTTT < 41bp 1 0.641598130973821 1 0.650474905967712 experiment 0.716803738052359 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424579 chr12:125424566 . . 0 8 hm5C_associated_SNPs_10177 0 0 1 0 0 unknown 1 0.500231643921092 0.699050188064576 0.999536712157815 hm5C_site_12500 DeepMRMD:0.699050188064576;iRNA_m5C:0.999536712157815 12501 chr12 125424566 125424566 1 + C T rs112048799 125424581 + 125424561 125424601 41 GGGTTCAATCCCCGGCATCTCCAGACTTTTCCGCCTTTTTC GGGTTTAATCCCCGGCATCTCCAGACTTTTCCGCCTTTTTC < 41bp 1 0.599689625088258 1 0.127560436725616 experiment 0.800620749823484 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424581 chr12:125424566 . . 0 6 hm5C_associated_SNPs_10178 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12501 DeepMRMD:1;iRNA_m5C:0.999536712157815 12502 chr12 125424566 125424566 1 + C T rs112048799 125424582 + 125424562 125424602 41 GGTTCAATCCCCGGCATCTCCAGACTTTTCCGCCTTTTTCG GGTTTAATCCCCGGCATCTCCAGACTTTTCCGCCTTTTTCG < 41bp 1 0.500856676096094 1 0.544067442417145 experiment 0.998286647807813 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR5188;DHX37 ENSG00000241129;ENSG00000150990 intergenic Human other chr12:125424582 chr12:125424566 . . 0 5 hm5C_associated_SNPs_10179 0 0 1 0 0 unknown 1 0.500231643921092 0.91186511516571 0.999536712157815 hm5C_site_12502 DeepMRMD:0.91186511516571;iRNA_m5C:0.999536712157815 12503 chr12 125478307 125478307 1 + C T rs11549741 125478312 + 125478292 125478332 41 ACGGCCCTCACCCCGCATCGCGACCCCGCGCCCCGCCGGCC ACGGCCCTCACCCCGTATCGCGACCCCGCGCCCCGCCGGCC < 41bp 1 0.648397139256089 1 0.250308573246002 experiment 0.703205721487822 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRI3BP ENSG00000184992 UTR5 Human protein_coding chr12:125478312 chr12:125478307 . . 0 16 hm5C_associated_SNPs_10180 0 0 1 0 0 Ribosome 1 0.50023164391711 1 0.999536712165779 hm5C_site_12503 DeepMRMD:1;iRNA_m5C:0.999536712165779 12504 chr12 125478307 125478307 1 + C T rs11549741 125478315 + 125478295 125478335 41 GCCCTCACCCCGCATCGCGACCCCGCGCCCCGCCGGCCGAG GCCCTCACCCCGTATCGCGACCCCGCGCCCCGCCGGCCGAG < 41bp 1 0.484618962833167 1 0.23098435997963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRI3BP ENSG00000184992 UTR5 Human protein_coding chr12:125478315 chr12:125478307 . . 0 13 hm5C_associated_SNPs_10181 0 0 1 0 0 Ribosome 1 0.500231643846253 1 0.999536712307495 hm5C_site_12504 DeepMRMD:1;iRNA_m5C:0.999536712307495 12505 chr12 125478307 125478307 1 + C T rs11549741 125478316 + 125478296 125478336 41 CCCTCACCCCGCATCGCGACCCCGCGCCCCGCCGGCCGAGC CCCTCACCCCGTATCGCGACCCCGCGCCCCGCCGGCCGAGC < 41bp 1 0.498633117084488 1 0.471393883228302 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRI3BP ENSG00000184992 UTR5 Human protein_coding chr12:125478316 chr12:125478307 . . 0 12 hm5C_associated_SNPs_10182 0 0 1 0 0 Ribosome 1 0.500231643890134 1 0.999536712219732 hm5C_site_12505 DeepMRMD:1;iRNA_m5C:0.999536712219732 12506 chr12 125478307 125478307 1 + C T rs11549741 125478317 + 125478297 125478337 41 CCTCACCCCGCATCGCGACCCCGCGCCCCGCCGGCCGAGCA CCTCACCCCGTATCGCGACCCCGCGCCCCGCCGGCCGAGCA < 41bp 1 0.681543393821606 1 0.661713242530823 experiment 0.636913212356788 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRI3BP ENSG00000184992 UTR5 Human protein_coding chr12:125478317 chr12:125478307 . . 0 11 hm5C_associated_SNPs_10183 0 0 1 0 0 Ribosome 1 0.50023164392303 0.676573514938354 0.999536712153941 hm5C_site_12506 DeepMRMD:0.676573514938354;iRNA_m5C:0.999536712153941 12507 chr12 125478307 125478307 1 + C T rs11549741 125478320 + 125478300 125478340 41 CACCCCGCATCGCGACCCCGCGCCCCGCCGGCCGAGCATGG CACCCCGTATCGCGACCCCGCGCCCCGCCGGCCGAGCATGG < 41bp 1 0.565024867676666 1 0.103991329669952 experiment 0.869950264646667 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRI3BP ENSG00000184992 UTR5 Human protein_coding chr12:125478320 chr12:125478307 . . 0 8 hm5C_associated_SNPs_10185 0 0 1 0 0 Ribosome 1 0.500231683032725 1 0.999536633934551 hm5C_site_12507 DeepMRMD:1;iRNA_m5C:0.999536633934551 12508 chr12 125478307 125478307 1 + C T rs11549741 125478322 + 125478302 125478342 41 CCCCGCATCGCGACCCCGCGCCCCGCCGGCCGAGCATGGGC CCCCGTATCGCGACCCCGCGCCCCGCCGGCCGAGCATGGGC < 41bp 1 0.579502516279088 1 0.100876241922379 experiment 0.840994967441823 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRI3BP ENSG00000184992 UTR5 Human protein_coding chr12:125478322 chr12:125478307 . . 0 6 hm5C_associated_SNPs_10186 0 0 1 0 0 Ribosome 1 0.500232867007091 1 0.999534265985818 hm5C_site_12508 DeepMRMD:1;iRNA_m5C:0.999534265985818 12509 chr12 125478307 125478307 1 + C T rs11549741 125478323 + 125478303 125478343 41 CCCGCATCGCGACCCCGCGCCCCGCCGGCCGAGCATGGGCG CCCGTATCGCGACCCCGCGCCCCGCCGGCCGAGCATGGGCG < 41bp 1 0.436672576212818 1 0.108059287071228 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRI3BP ENSG00000184992 UTR5 Human protein_coding chr12:125478323 chr12:125478307 . . 0 5 hm5C_associated_SNPs_10187 0 0 1 0 0 Ribosome 1 0.500231640824597 1 0.999536718350805 hm5C_site_12509 DeepMRMD:1;iRNA_m5C:0.999536718350805 12510 chr12 125478307 125478307 1 + C T rs11549741 125478324 + 125478304 125478344 41 CCGCATCGCGACCCCGCGCCCCGCCGGCCGAGCATGGGCGC CCGTATCGCGACCCCGCGCCCCGCCGGCCGAGCATGGGCGC < 41bp 1 0.681507030659949 1 0.667232036590576 experiment 0.636985938680101 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRI3BP ENSG00000184992 UTR5 Human protein_coding chr12:125478324 chr12:125478307 . . 0 4 hm5C_associated_SNPs_10188 0 0 1 0 0 Ribosome 1 0.500231861076129 0.665535926818848 0.999536277847741 hm5C_site_12510 DeepMRMD:0.665535926818848;iRNA_m5C:0.999536277847741 12511 chr12 125550046 125550046 1 + C T rs543952183 125550062 + 125550042 125550082 41 CTTCCTCCGGTCCCAGGTCCCCGGCCCTCGCCTCAGCCCCG CTTCTTCCGGTCCCAGGTCCCCGGCCCTCGCCTCAGCCCCG < 41bp 1 0.567463317798726 1 0.81040221452713 experiment 0.865073364402548 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AACS ENSG00000081760 UTR5 Human protein_coding chr12:125550062 chr12:125550046 . . 0 5 hm5C_associated_SNPs_10190 0 0 1 0 0 Ribosome 1 0.500231538593515 0.37919557094574 0.99953692281297 hm5C_site_12511 DeepMRMD:0.37919557094574;iRNA_m5C:0.99953692281297 12512 chr12 125603223 125603223 1 + C T rs138543814 125603220 + 125603200 125603240 41 TGTGGAACTGGATGGTGTCCCTTCTGGCCACAGGAGCGGCC TGTGGAACTGGATGGTGTCCCTTTTGGCCACAGGAGCGGCC < 41bp 1 0.154496453845377 1 0.0614384710788727 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125603220 chr12:125603223 synonymous SNV . 0 24 hm5C_associated_SNPs_10191 0 0 1 0 1 Ribosome 1 0.50023164392118 1 0.99953671215764 hm5C_site_12512 DeepMRMD:1;iRNA_m5C:0.99953671215764 12513 chr12 125626785 125626785 1 + G C rs3751179 125626799 + 125626779 125626819 41 AGACTGGCTGGCGTGTCACTCAGCCGCACCCGTGTGCACTG AGACTGCCTGGCGTGTCACTCAGCCGCACCCGTGTGCACTG < 41bp 1 0.550046169813251 1 0.735016107559204 experiment 0.899907660373499 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AACS ENSG00000081760 UTR3 Human protein_coding chr12:125626799 chr12:125626785 . . 0 7 hm5C_associated_SNPs_10192 0 0 1 0 0 Ribosome 1 0.500233117643095 0.529967784881592 0.999533764713809 hm5C_site_12513 DeepMRMD:0.529967784881592;iRNA_m5C:0.999533764713809 12514 chr12 130649687 130649687 1 + T C rs118177215 130649698 + 130649678 130649718 41 CCACAGTGCTGGGCGGCATCCCTGCAGAGGAAAGACAGGAC CCACAGTGCCGGGCGGCATCCCTGCAGAGGAAAGACAGGAC < 41bp 1 0.383662541246255 1 0.469149053096771 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FZD10 ENSG00000111432 UTR3 Human protein_coding chr12:130649698 chr12:130649687 . . 0 10 hm5C_associated_SNPs_10193 0 0 0 0 0 exosome 1 0.500231643936919 1 0.999536712126162 hm5C_site_12514 DeepMRMD:1;iRNA_m5C:0.999536712126162 12515 chr12 131488789 131488789 1 + G A rs73473278 131488788 + 131488768 131488808 41 TTCCTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA TTCCTCCCATTACCGCTTCCCAGCCCACGGGCAGAGCTTCA < 41bp 1 0.188535365904316 1 0.381116330623627 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488788 chr12:131488789 synonymous SNV . 0 22 hm5C_associated_SNPs_10194 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12515 DeepMRMD:1;iRNA_m5C:0.999536712157815 12516 chr12 131488789 131488789 1 + G A rs73473278 131488791 + 131488771 131488811 41 CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC CTCCCATTACCGCTTCCCAGCCCACGGGCAGAGCTTCATCC < 41bp 1 0.0627866144322483 1 0.104543805122375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488791 chr12:131488789 synonymous SNV . 0 19 hm5C_associated_SNPs_10195 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_12516 DeepMRMD:1;iRNA_m5C:0.999536712157816 12517 chr12 131488789 131488789 1 + G A rs73473278 131488792 + 131488772 131488812 41 TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA TCCCATTACCGCTTCCCAGCCCACGGGCAGAGCTTCATCCA < 41bp 1 0.290569267075388 1 0.664961218833923 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488792 chr12:131488789 synonymous SNV . 0 18 hm5C_associated_SNPs_10196 0 0 1 0 1 chromatin 1 0.500231643874397 0.670077562332154 0.999536712251206 hm5C_site_12517 DeepMRMD:0.670077562332154;iRNA_m5C:0.999536712251206 12518 chr12 131488789 131488789 1 + G A rs73473278 131488795 + 131488775 131488815 41 CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGAT CATTACCGCTTCCCAGCCCACGGGCAGAGCTTCATCCAGAT < 41bp 1 0.522529904403855 1 0.931143760681152 experiment 0.95494019119229 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488795 chr12:131488789 synonymous SNV . 0 15 hm5C_associated_SNPs_10198 0 0 1 0 1 chromatin 1 0.500231643604516 0.137712478637696 0.999536712790967 hm5C_site_12518 DeepMRMD:0.137712478637696;iRNA_m5C:0.999536712790967 12519 chr12 131488789 131488789 1 + G A rs73473278 131488799 + 131488779 131488819 41 ACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGATCCCC ACCGCTTCCCAGCCCACGGGCAGAGCTTCATCCAGATCCCC < 41bp 1 0.301140948495818 1 0.260250568389893 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488799 chr12:131488789 synonymous SNV . 0 11 hm5C_associated_SNPs_10199 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_12519 DeepMRMD:1;iRNA_m5C:0.999536712157814 12520 chr12 131625549 131625549 1 + G T rs73149940 131625559 + 131625539 131625579 41 ACTGCCCCAGGCTCCCGTGACCCCAGAAACCAGGTCACATG ACTGCCCCAGTCTCCCGTGACCCCAGAAACCAGGTCACATG < 41bp 1 0.411894367735673 1 0.0663086771965027 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 UTR3 Human protein_coding chr12:131625559 chr12:131625549 . . 0 11 hm5C_associated_SNPs_10201 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_12520 DeepMRMD:1;iRNA_m5C:0.999536712157814 12521 chr12 131625549 131625549 1 + G T rs73149940 131625560 + 131625540 131625580 41 CTGCCCCAGGCTCCCGTGACCCCAGAAACCAGGTCACATGG CTGCCCCAGTCTCCCGTGACCCCAGAAACCAGGTCACATGG < 41bp 1 0.365644302138 1 0.315512478351593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 UTR3 Human protein_coding chr12:131625560 chr12:131625549 . . 0 10 hm5C_associated_SNPs_10202 0 0 1 0 0 chromatin 1 0.50023164433265 1 0.999536711334701 hm5C_site_12521 DeepMRMD:1;iRNA_m5C:0.999536711334701 12522 chr12 131625552 131625552 1 + C A rs185274113 131625559 + 131625539 131625579 41 ACTGCCCCAGGCTCCCGTGACCCCAGAAACCAGGTCACATG ACTGCCCCAGGCTACCGTGACCCCAGAAACCAGGTCACATG < 41bp 1 0.447441959998311 1 0.041399747133255 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 UTR3 Human protein_coding chr12:131625559 chr12:131625552 . . 0 14 hm5C_associated_SNPs_10203 0 0 1 0 0 chromatin 1 0.500231643921104 1 0.999536712157792 hm5C_site_12522 DeepMRMD:1;iRNA_m5C:0.999536712157792 12523 chr12 131625552 131625552 1 + C A rs185274113 131625560 + 131625540 131625580 41 CTGCCCCAGGCTCCCGTGACCCCAGAAACCAGGTCACATGG CTGCCCCAGGCTACCGTGACCCCAGAAACCAGGTCACATGG < 41bp 1 0.377888763654885 1 0.187328904867172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 UTR3 Human protein_coding chr12:131625560 chr12:131625552 . . 0 13 hm5C_associated_SNPs_10204 0 0 1 0 0 chromatin 1 0.500231644881871 1 0.999536710236257 hm5C_site_12523 DeepMRMD:1;iRNA_m5C:0.999536710236257 12524 chr12 131625577 131625577 1 + A G rs77522954 131625559 + 131625539 131625579 41 ACTGCCCCAGGCTCCCGTGACCCCAGAAACCAGGTCACATG ACTGCCCCAGGCTCCCGTGACCCCAGAAACCAGGTCACGTG < 41bp 1 0.463864225543603 1 0.0823777318000793 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 UTR3 Human protein_coding chr12:131625559 chr12:131625577 . . 0 39 hm5C_associated_SNPs_10205 0 0 1 0 0 chromatin 1 0.500231643921089 1 0.999536712157822 hm5C_site_12524 DeepMRMD:1;iRNA_m5C:0.999536712157822 12525 chr12 131625577 131625577 1 + A G rs77522954 131625560 + 131625540 131625580 41 CTGCCCCAGGCTCCCGTGACCCCAGAAACCAGGTCACATGG CTGCCCCAGGCTCCCGTGACCCCAGAAACCAGGTCACGTGG < 41bp 1 0.399061363484296 1 0.462578773498535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 UTR3 Human protein_coding chr12:131625560 chr12:131625577 . . 0 38 hm5C_associated_SNPs_10206 0 0 1 0 0 chromatin 1 0.500231643870468 1 0.999536712259065 hm5C_site_12525 DeepMRMD:1;iRNA_m5C:0.999536712259065 12526 chr12 132262713 132262713 1 + C T rs79031981 132262709 + 132262689 132262729 41 CTTCGAGCAAAAGCAAAGATCCACCGAGAGAAGAAGAGAAA CTTCGAGCAAAAGCAAAGATCCACTGAGAGAAGAAGAGAAA < 41bp 1 0.121606577315703 1 0.146758675575256 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132262709 chr12:132262713 nonsynonymous SNV 0.462 3 25 hm5C_associated_SNPs_10207 0 0 1 0 0 Nucleus 1 0.500231643718893 1 0.999536712562214 hm5C_site_12526 DeepMRMD:1;iRNA_m5C:0.999536712562214 12527 chr12 132325352 132325352 1 + C T rs201315531 132325361 + 132325341 132325381 41 CACCACACCGCCGGGGACACCCACTTTGACGATGACGAGGC CACCACACCGCTGGGGACACCCACTTTGACGATGACGAGGC < 41bp 1 0.185383834227492 1 0.205716460943222 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325361 chr12:132325352 synonymous SNV . 0 12 hm5C_associated_SNPs_10208 0 0 0 0 1 Cytosol 1 0.500231643795286 1 0.999536712409427 hm5C_site_12527 DeepMRMD:1;iRNA_m5C:0.999536712409427 12528 chr12 132325376 132325376 1 + C T rs34515698 132325361 + 132325341 132325381 41 CACCACACCGCCGGGGACACCCACTTTGACGATGACGAGGC CACCACACCGCCGGGGACACCCACTTTGACGATGATGAGGC < 41bp 1 0.184517673549786 1 0.131160825490952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325361 chr12:132325376 synonymous SNV . 0 36 hm5C_associated_SNPs_10209 0 0 1 0 1 Cytosol 1 0.500231643755295 1 0.99953671248941 hm5C_site_12528 DeepMRMD:1;iRNA_m5C:0.99953671248941 12529 chr12 132326242 132326242 1 + C T rs17854024 132326257 + 132326237 132326277 41 GTGGCCGCTGCACACTCCATCATGCGGCCGTACTACCAGGG GTGGCTGCTGCACACTCCATCATGCGGCCGTACTACCAGGG < 41bp 1 0.269495254248334 1 0.710737228393555 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132326257 chr12:132326242 synonymous SNV . 0 6 hm5C_associated_SNPs_10210 0 0 0 0 1 Cytosol 1 0.500231643921095 0.57852554321289 0.99953671215781 hm5C_site_12529 DeepMRMD:0.57852554321289;iRNA_m5C:0.99953671215781 12530 chr12 132328603 132328603 1 + C G rs141838854 132328586 + 132328566 132328606 41 CGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCA CGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCGCCA < 41bp 1 0.322891072575636 1 0.278598189353943 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328586 chr12:132328603 synonymous SNV . 0 38 hm5C_associated_SNPs_10211 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12530 DeepMRMD:1;iRNA_m5C:0.999536712157815 12531 chr12 132328603 132328603 1 + C G rs141838854 132328588 + 132328568 132328608 41 GCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCAGA GCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCGCCAGA < 41bp 1 0.219231928565159 1 0.122638314962387 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328588 chr12:132328603 synonymous SNV . 0 36 hm5C_associated_SNPs_10212 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12531 DeepMRMD:1;iRNA_m5C:0.999536712157815 12532 chr12 132445592 132445592 1 + C T rs546918978 132445580 + 132445560 132445600 41 GACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGG GACCCAGAGTCCCACGCAGCCCAGTCCGGGGCTGGGGCAGG < 41bp 1 0.140757326609021 1 0.116459608078003 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132445580 chr12:132445592 nonsynonymous SNV 0.288 4 33 hm5C_associated_SNPs_10213 0 0 0 0 0 Cytosol 1 0.500313376641477 1 0.999373246717047 hm5C_site_12532 DeepMRMD:1;iRNA_m5C:0.999373246717047 12533 chr12 132445592 132445592 1 + C T rs546918978 132445581 + 132445561 132445601 41 ACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGGC ACCCAGAGTCCCACGCAGCCCAGTCCGGGGCTGGGGCAGGC < 41bp 1 0.149922042336052 1 0.102714121341705 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132445581 chr12:132445592 nonsynonymous SNV 0.288 4 32 hm5C_associated_SNPs_10214 0 0 0 0 0 Cytosol 1 0.500231643872517 1 0.999536712254966 hm5C_site_12533 DeepMRMD:1;iRNA_m5C:0.999536712254966 12534 chr12 132445592 132445592 1 + C T rs546918978 132445585 + 132445565 132445605 41 AGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTG AGAGTCCCACGCAGCCCAGTCCGGGGCTGGGGCAGGCCTTG < 41bp 1 0.470383031450203 1 0.90637880563736 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132445585 chr12:132445592 nonsynonymous SNV 0.288 4 28 hm5C_associated_SNPs_10215 0 0 0 0 0 Cytosol 1 0.500231645797962 0.18724238872528 0.999536708404076 hm5C_site_12534 DeepMRMD:0.18724238872528;iRNA_m5C:0.999536708404076 12535 chr12 132445592 132445592 1 + C T rs546918978 132445586 + 132445566 132445606 41 GAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTGC GAGTCCCACGCAGCCCAGTCCGGGGCTGGGGCAGGCCTTGC < 41bp 1 0.667262329065446 1 0.833873808383942 experiment 0.665475341869107 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132445586 chr12:132445592 nonsynonymous SNV 0.288 4 27 hm5C_associated_SNPs_10216 0 0 0 0 0 Cytosol 1 0.500231643921092 0.332252383232116 0.999536712157815 hm5C_site_12535 DeepMRMD:0.332252383232116;iRNA_m5C:0.999536712157815 12536 chr12 132445592 132445592 1 + C T rs546918978 132445591 + 132445571 132445611 41 CCACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAAT CCACGCAGCCCAGTCCGGGGCTGGGGCAGGCCTTGCAGAAT < 41bp 1 0.57237823498736 1 0.610775828361511 experiment 0.85524353002528 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132445591 chr12:132445592 nonsynonymous SNV 0.288 4 22 hm5C_associated_SNPs_10217 0 0 0 0 0 Cytosol 1 0.500231643921892 0.778448343276978 0.999536712156216 hm5C_site_12536 DeepMRMD:0.778448343276978;iRNA_m5C:0.999536712156216 12537 chr12 132445592 132445592 1 + C T rs546918978 132445597 + 132445577 132445617 41 AGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAATGTGCGT AGCCCAGTCCGGGGCTGGGGCAGGCCTTGCAGAATGTGCGT < 41bp 1 0.502664205940877 1 0.54816073179245 experiment 0.994671588118247 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132445597 chr12:132445592 nonsynonymous SNV 0.288 4 16 hm5C_associated_SNPs_10218 0 0 0 0 0 Cytosol 1 0.500231643921092 0.9036785364151 0.999536712157815 hm5C_site_12537 DeepMRMD:0.9036785364151;iRNA_m5C:0.999536712157815 12538 chr12 132464251 132464251 1 + G A rs147304028 132464239 + 132464219 132464259 41 TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCAGGGAGC TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCACAGGGAGC < 41bp 1 0.224727944902723 1 0.28991025686264 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132464239 chr12:132464251 nonsynonymous SNV 0.433 1 33 hm5C_associated_SNPs_10219 0 0 1 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12538 DeepMRMD:1;iRNA_m5C:0.999536712157815 12539 chr12 132546675 132546675 1 + C T rs143376217 132546658 + 132546638 132546678 41 CTGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCCGCC CTGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCTGCC < 41bp 1 0.267206716265095 1 0.809038519859314 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546658 chr12:132546675 synonymous SNV . 0 38 hm5C_associated_SNPs_10220 0 0 0 0 1 Cytosol 1 0.500231643921089 0.381922960281372 0.999536712157821 hm5C_site_12539 DeepMRMD:0.381922960281372;iRNA_m5C:0.999536712157821 12540 chr12 132546675 132546675 1 + C T rs143376217 132546659 + 132546639 132546679 41 TGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCCGCCC TGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCTGCCC < 41bp 1 0.69139186088227 1 0.886226415634155 experiment 0.617216278235459 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546659 chr12:132546675 synonymous SNV . 0 37 hm5C_associated_SNPs_10221 0 0 0 0 1 Cytosol 1 0.500231644219634 0.22754716873169 0.999536711560733 hm5C_site_12540 DeepMRMD:0.22754716873169;iRNA_m5C:0.999536711560733 12541 chr12 132547132 132547132 1 + G A rs149369604 132547130 + 132547110 132547150 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG AGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAG < 41bp 1 0.386454507332374 1 0.563611268997192 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132547130 chr12:132547132 synonymous SNV . 0 23 hm5C_associated_SNPs_10222 0 0 0 0 0 Cytosol 1 0.500231663668679 0.872777462005616 0.999536672662641 hm5C_site_12541 DeepMRMD:0.872777462005616;iRNA_m5C:0.999536672662641 12542 chr12 132547138 132547138 1 + A G rs111782215 132547130 + 132547110 132547150 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG < 41bp 1 0.545587993974639 1 0.56900829076767 experiment 0.908824012050722 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132547130 chr12:132547138 synonymous SNV . 0 29 hm5C_associated_SNPs_10223 0 0 0 0 0 Cytosol 1 0.500231643920759 0.86198341846466 0.999536712158482 hm5C_site_12542 DeepMRMD:0.86198341846466;iRNA_m5C:0.999536712158482 12543 chr12 132562086 132562086 1 + G A rs187160839 132562071 + 132562051 132562091 41 ATTCAGCAGCAGGTGGTGACCACGGCGTCGGCCCCGCTCCA ATTCAGCAGCAGGTGGTGACCACGGCGTCGGCCCCACTCCA < 41bp 1 0.693422359090618 1 0.895921349525452 experiment 0.613155281818763 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132562071 chr12:132562086 synonymous SNV . 0 36 hm5C_associated_SNPs_10225 0 0 1 0 0 Cytosol 1 0.500232799440086 0.208157300949096 0.999534401119829 hm5C_site_12543 DeepMRMD:0.208157300949096;iRNA_m5C:0.999534401119829 12544 chr12 132588997 132588997 1 + T A rs540126078 132588993 + 132588973 132589013 41 GCAGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCC GCAGAATGTGCGTGCAGGTGCCCCAGGCCCTGGGCTGGGCC < 41bp 1 0.578184546071218 1 0.210799872875214 experiment 0.843630907857564 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588993 chr12:132588997 synonymous SNV . 0 25 hm5C_associated_SNPs_10226 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_12544 DeepMRMD:1;iRNA_m5C:0.999536712157816 12545 chr12 132588997 132588997 1 + T A rs540126078 132588994 + 132588974 132589014 41 CAGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCT CAGAATGTGCGTGCAGGTGCCCCAGGCCCTGGGCTGGGCCT < 41bp 1 0.342111284468457 1 0.171661794185638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588994 chr12:132588997 synonymous SNV . 0 24 hm5C_associated_SNPs_10227 0 0 1 0 1 chromatin 1 0.500231774681624 1 0.999536450636753 hm5C_site_12545 DeepMRMD:1;iRNA_m5C:0.999536450636753 12546 chr12 132588997 132588997 1 + T A rs540126078 132588995 + 132588975 132589015 41 AGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTC AGAATGTGCGTGCAGGTGCCCCAGGCCCTGGGCTGGGCCTC < 41bp 1 0.504902680208996 1 0.505067229270935 experiment 0.990194639582009 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588995 chr12:132588997 synonymous SNV . 0 23 hm5C_associated_SNPs_10228 0 0 1 0 1 chromatin 1 0.500231643921089 0.98986554145813 0.999536712157823 hm5C_site_12546 DeepMRMD:0.98986554145813;iRNA_m5C:0.999536712157823 12547 chr12 132588997 132588997 1 + T A rs540126078 132588996 + 132588976 132589016 41 GAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCT GAATGTGCGTGCAGGTGCCCCAGGCCCTGGGCTGGGCCTCT < 41bp 1 0.545569888352382 1 0.745689511299133 experiment 0.908860223295235 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588996 chr12:132588997 synonymous SNV . 0 22 hm5C_associated_SNPs_10229 0 0 1 0 1 chromatin 1 0.500231643973121 0.508620977401734 0.999536712053758 hm5C_site_12547 DeepMRMD:0.508620977401734;iRNA_m5C:0.999536712053758 12548 chr12 132588997 132588997 1 + T A rs540126078 132589000 + 132588980 132589020 41 GTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAG GTGCGTGCAGGTGCCCCAGGCCCTGGGCTGGGCCTCTGCAG < 41bp 1 0.285628210252528 1 0.213911533355713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589000 chr12:132588997 synonymous SNV . 0 18 hm5C_associated_SNPs_10230 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12548 DeepMRMD:1;iRNA_m5C:0.999536712157815 12549 chr12 132588997 132588997 1 + T A rs540126078 132589001 + 132588981 132589021 41 TGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGC TGCGTGCAGGTGCCCCAGGCCCTGGGCTGGGCCTCTGCAGC < 41bp 1 0.314669882322105 1 0.338723659515381 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589001 chr12:132588997 synonymous SNV . 0 17 hm5C_associated_SNPs_10231 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12549 DeepMRMD:1;iRNA_m5C:0.999536712157815 12550 chr12 132588997 132588997 1 + T A rs540126078 132589007 + 132588987 132589027 41 CAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGCAGCAGC CAGGTGCCCCAGGCCCTGGGCTGGGCCTCTGCAGCAGCAGC < 41bp 1 0.587461156632765 1 0.604847311973572 experiment 0.825077686734471 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589007 chr12:132588997 synonymous SNV . 0 11 hm5C_associated_SNPs_10232 0 0 1 0 1 chromatin 1 0.500231644068263 0.790305376052856 0.999536711863474 hm5C_site_12550 DeepMRMD:0.790305376052856;iRNA_m5C:0.999536711863474 12551 chr12 132589430 132589430 1 + G A rs148493427 132589422 + 132589402 132589442 41 GCCCCTGGGCTTCGAGAGGACGCCCGGCGTGCTGCTCCCCG GCCCCTGGGCTTCGAGAGGACGCCCGGCATGCTGCTCCCCG < 41bp 1 0.523315588991204 1 0.0606718063354492 experiment 0.953368822017592 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589422 chr12:132589430 nonsynonymous SNV 0.156 0 29 hm5C_associated_SNPs_10233 0 0 1 0 0 chromatin 1 0.500231643921094 1 0.999536712157812 hm5C_site_12551 DeepMRMD:1;iRNA_m5C:0.999536712157812 12552 chr12 133146732 133146732 1 + G A rs3751314 133146730 + 133146710 133146750 41 ACACCCCGCAGCCGCCACCCCCGCAGCCCCGCGGCCTGCTC ACACCCCGCAGCCGCCACCCCCACAGCCCCGCGGCCTGCTC < 41bp 1 0.516181010122821 1 0.483176916837692 experiment 0.967637979754358 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBRSL1 ENSG00000112787 CDS Human protein_coding chr12:133146730 chr12:133146732 synonymous SNV . 0 23 hm5C_associated_SNPs_10234 0 0 0 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_12552 DeepMRMD:1;iRNA_m5C:0.999536712157815 12553 chr12 133298215 133298215 1 + C A rs11147017 133298216 + 133298196 133298236 41 CGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAGTGGTG CGGAGTTTCACTCTTGTTGACCAGGCTGGAGTGCAGTGGTG < 41bp 1 0.28894608620274 1 0.0869246125221252 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PGAM5 ENSG00000247077 UTR3 Human protein_coding chr12:133298216 chr12:133298215 . . 0 20 hm5C_associated_SNPs_10235 0 0 0 0 0 Cytosol 1 0.500231545315845 1 0.999536909368309 hm5C_site_12553 DeepMRMD:1;iRNA_m5C:0.999536909368309 12554 chr12 133298215 133298215 1 + C A rs11147017 133298217 + 133298197 133298237 41 GGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAGTGGTGC GGAGTTTCACTCTTGTTGACCAGGCTGGAGTGCAGTGGTGC < 41bp 1 0.289237999674827 1 0.447698026895523 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PGAM5 ENSG00000247077 UTR3 Human protein_coding chr12:133298217 chr12:133298215 . . 0 19 hm5C_associated_SNPs_10236 0 0 0 0 0 Cytosol 1 0.498433910000985 1 1 hm5C_site_12554 DeepMRMD:1;iRNA_m5C:1 12555 chr12 133298215 133298215 1 + C A rs11147017 133298229 + 133298209 133298249 41 TTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCA TTGTTGACCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCA < 41bp 1 0.611547071843576 1 0.438710123300552 experiment 0.776905856312849 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PGAM5 ENSG00000247077 UTR3 Human protein_coding chr12:133298229 chr12:133298215 . . 0 7 hm5C_associated_SNPs_10237 0 0 0 0 0 Cytosol 1 0.500231643904084 1 0.999536712191831 hm5C_site_12555 DeepMRMD:1;iRNA_m5C:0.999536712191831 12556 chr12 133298217 133298217 1 + C G rs11147018 133298215 + 133298195 133298235 41 ACGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAGTGGT ACGGAGTTTCACTCTTGTTGCCGAGGCTGGAGTGCAGTGGT < 41bp 1 0.250935855818039 1 0.757773995399475 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PGAM5 ENSG00000247077 UTR3 Human protein_coding chr12:133298215 chr12:133298217 . . 0 23 hm5C_associated_SNPs_10238 0 0 0 0 0 Cytosol 1 0.49992946299348 0.48445200920105 1 hm5C_site_12556 DeepMRMD:0.48445200920105;iRNA_m5C:1 12557 chr12 133298217 133298217 1 + C G rs11147018 133298216 + 133298196 133298236 41 CGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAGTGGTG CGGAGTTTCACTCTTGTTGCCGAGGCTGGAGTGCAGTGGTG < 41bp 1 0.586049764057931 1 0.592966020107269 experiment 0.827900471884139 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PGAM5 ENSG00000247077 UTR3 Human protein_coding chr12:133298216 chr12:133298217 . . 0 22 hm5C_associated_SNPs_10239 0 0 0 0 0 Cytosol 1 0.500231643989817 0.814067959785462 0.999536712020366 hm5C_site_12557 DeepMRMD:0.814067959785462;iRNA_m5C:0.999536712020366 12558 chr12 133298217 133298217 1 + C G rs11147018 133298229 + 133298209 133298249 41 TTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCA TTGTTGCCGAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCA < 41bp 1 0.611198589544392 1 0.712611436843872 experiment 0.777602820911216 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PGAM5 ENSG00000247077 UTR3 Human protein_coding chr12:133298229 chr12:133298217 . . 0 9 hm5C_associated_SNPs_10240 0 0 0 0 0 Cytosol 1 0.500231643921092 0.574777126312256 0.999536712157815 hm5C_site_12558 DeepMRMD:0.574777126312256;iRNA_m5C:0.999536712157815 12559 chr12 133298238 133298238 1 + G A rs565319156 133298229 + 133298209 133298249 41 TTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCA TTGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCA < 41bp 1 0.545657802591272 1 0.285034149885178 experiment 0.908684394817456 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PGAM5 ENSG00000247077 UTR3 Human protein_coding chr12:133298229 chr12:133298238 . . 0 30 hm5C_associated_SNPs_10241 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12559 DeepMRMD:1;iRNA_m5C:0.999536712157815 12560 chr13 21750806 21750806 1 + A G rs373866368 21750813 + 21750793 21750833 41 GTGCGCTTACGCCACGGCGTCTGCTGGCGGCCGCGGAGACG GTGCGCTTACGCCGCGGCGTCTGCTGGCGGCCGCGGAGACG < 41bp 1 0.645518789555483 1 0.198293656110764 experiment 0.708962420889034 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL57 ENSG00000173141 UTR5 Human protein_coding chr13:21750813 chr13:21750806 . . 0 14 hm5C_associated_SNPs_10242 0 0 1 0 1 Ribosome 1 0.500456672981605 1 0.99908665403679 hm5C_site_12560 DeepMRMD:1;iRNA_m5C:0.99908665403679 12561 chr13 21750806 21750806 1 + A G rs373866368 21750820 + 21750800 21750840 41 TACGCCACGGCGTCTGCTGGCGGCCGCGGAGACGCAGAGTC TACGCCGCGGCGTCTGCTGGCGGCCGCGGAGACGCAGAGTC < 41bp 1 0.693763305543397 1 0.662363052368164 experiment 0.612473388913206 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL57 ENSG00000173141 UTR5 Human protein_coding chr13:21750820 chr13:21750806 . . 0 7 hm5C_associated_SNPs_10243 0 0 1 0 1 Ribosome 1 0.500231644492031 0.675273895263672 0.999536711015939 hm5C_site_12561 DeepMRMD:0.675273895263672;iRNA_m5C:0.999536711015939 12562 chr13 24877225 24877225 1 + C T rs183812171 24877211 + 24877191 24877231 41 TAAAGCGAGTGATTAGGCAGCAGCTGAAGCCACCCCTGCTG TAAAGCGAGTGATTAGGCAGCAGCTGAAGCCACCTCTGCTG < 41bp 1 0.370786507230105 1 0.422056406736374 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPATA13 ENSG00000182957 UTR3 Human protein_coding chr13:24877211 chr13:24877225 . . 0 35 hm5C_associated_SNPs_10245 0 0 0 1 0 Cytosol 1 0.50023164392146 1 0.99953671215708 hm5C_site_12562 DeepMRMD:1;iRNA_m5C:0.99953671215708 12563 chr13 24877851 24877851 1 + G A rs56198152 24877871 + 24877851 24877891 41 GTGGCCAATATGGCAAAGCCCAGTCTCTACTAATAATACAA ATGGCCAATATGGCAAAGCCCAGTCTCTACTAATAATACAA < 41bp 1 0.0394709415312972 1 0.0335533320903778 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPATA13 ENSG00000182957 UTR3 Human protein_coding chr13:24877871 chr13:24877851 . . 0 1 hm5C_associated_SNPs_10246 0 0 0 1 0 Cytosol 1 0.500231643921088 1 0.999536712157824 hm5C_site_12563 DeepMRMD:1;iRNA_m5C:0.999536712157824 12564 chr13 27829212 27829212 1 + G A rs140626344 27829203 + 27829183 27829223 41 AATGTATCTTGGCACTCGAGCTTAATGATGACTGTTTTTTT AATGTATCTTGGCACTCGAGCTTAATGATAACTGTTTTTTT < 41bp 1 0.160791792754384 1 0.167199432849884 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD102 ENSG00000207500 ncRNA_exonic Human snoRNA chr13:27829203 chr13:27829212 . . 0 30 hm5C_associated_SNPs_10247 0 0 1 2 0 unknown 1 0.500231650246639 1 0.999536699506722 hm5C_site_12564 DeepMRMD:1;iRNA_m5C:0.999536699506722 12565 chr13 27829212 27829212 1 + G A rs140626344 27829214 + 27829194 27829234 41 GCACTCGAGCTTAATGATGACTGTTTTTTTTGATTGCTTGA GCACTCGAGCTTAATGATAACTGTTTTTTTTGATTGCTTGA < 41bp 1 0.181305079971761 1 0.0567201673984528 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD102 ENSG00000207500 ncRNA_exonic Human snoRNA chr13:27829214 chr13:27829212 . . 0 19 hm5C_associated_SNPs_10248 0 0 1 2 0 unknown 1 0.500232091298193 1 0.999535817403614 hm5C_site_12565 DeepMRMD:1;iRNA_m5C:0.999535817403614 12566 chr13 28494251 28494251 1 + C T rs557174897 28494257 + 28494237 28494277 41 CGGCTCCCGGCTCCCGGTGCCCAATCCCGGGCCGCAGCCAT CGGCTCCCGGCTCCTGGTGCCCAATCCCGGGCCGCAGCCAT < 41bp 1 0.388655204939438 1 0.0367492139339447 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDX1 ENSG00000247381 ncRNA_intronic Human antisense chr13:28494257 chr13:28494251 . . 0 15 hm5C_associated_SNPs_10252 0 0 0 0 0 exosome 1 0.500231643925968 1 0.999536712148063 hm5C_site_12566 DeepMRMD:1;iRNA_m5C:0.999536712148063 12567 chr13 28494251 28494251 1 + C T rs557174897 28494258 + 28494238 28494278 41 GGCTCCCGGCTCCCGGTGCCCAATCCCGGGCCGCAGCCATG GGCTCCCGGCTCCTGGTGCCCAATCCCGGGCCGCAGCCATG < 41bp 1 0.446662747165242 1 0.0830563604831696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDX1 ENSG00000247381 ncRNA_intronic Human antisense chr13:28494258 chr13:28494251 . . 0 14 hm5C_associated_SNPs_10253 0 0 0 0 0 exosome 1 0.500157990287353 1 0.999684019425294 hm5C_site_12567 DeepMRMD:1;iRNA_m5C:0.999684019425294 12568 chr13 28494258 28494258 1 + C T rs193922351 28494257 + 28494237 28494277 41 CGGCTCCCGGCTCCCGGTGCCCAATCCCGGGCCGCAGCCAT CGGCTCCCGGCTCCCGGTGCCTAATCCCGGGCCGCAGCCAT < 41bp 1 0.519437454845193 1 0.0388334691524506 experiment 0.961125090309615 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDX1 ENSG00000247381 ncRNA_intronic Human antisense chr13:28494257 chr13:28494258 . . 0 22 hm5C_associated_SNPs_10254 2 0 0 0 0 exosome 1 0.500231643921076 1 0.999536712157848 hm5C_site_12568 DeepMRMD:1;iRNA_m5C:0.999536712157848 Maturity-onset diabetes of the young, type 4 Maturity-onset diabetes of the young, type 4 12569 chr13 31903712 31903712 1 + C T rs372748811 31903694 + 31903674 31903714 41 CATCAAGTTCCCATATCGTTCCACAAACACTGGAACATCGA CATCAAGTTCCCATATCGTTCCACAAACACTGGAACATTGA < 41bp 1 0.348826130560319 1 0.135055005550385 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31903694 chr13:31903712 synonymous SNV . 0 39 hm5C_associated_SNPs_10255 0 0 0 0 1 Ribosome 1 0.500231644386656 1 0.999536711226688 hm5C_site_12569 DeepMRMD:1;iRNA_m5C:0.999536711226688 12570 chr13 33349341 33349341 1 + A C rs3492 33349340 + 33349320 33349360 41 CTTACTTTGGTGACCCCATACATTTGTGGTCACATGCTTTA CTTACTTTGGTGACCCCATACCTTTGTGGTCACATGCTTTA < 41bp 1 0.059708660807646 1 0.0602525472640991 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDS5B ENSG00000083642 UTR3 Human protein_coding chr13:33349340 chr13:33349341 . . 0 22 hm5C_associated_SNPs_10256 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12570 DeepMRMD:1;iRNA_m5C:0.999536712157815 12571 chr13 41950104 41950104 1 + C T rs56724144 41950124 + 41950104 41950144 41 CATCAGTTTTAAAGTGTTAACTATATGTTAACAATATGGAG TATCAGTTTTAAAGTGTTAACTATATGTTAACAATATGGAG < 41bp 1 0.539011361770974 1 0.237141966819763 experiment 0.921977276458052 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAA16 ENSG00000172766 UTR3 Human protein_coding chr13:41950124 chr13:41950104 . . 0 1 hm5C_associated_SNPs_10259 0 0 1 1 0 chromatin 1 0.500231969849658 1 0.999536060300685 hm5C_site_12571 DeepMRMD:1;iRNA_m5C:0.999536060300685 12572 chr13 41950126 41950126 1 + A G rs73181107 41950124 + 41950104 41950144 41 CATCAGTTTTAAAGTGTTAACTATATGTTAACAATATGGAG CATCAGTTTTAAAGTGTTAACTGTATGTTAACAATATGGAG < 41bp 1 0.651739711579148 1 0.144104450941086 experiment 0.696520576841704 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAA16 ENSG00000172766 UTR3 Human protein_coding chr13:41950124 chr13:41950126 . . 0 23 hm5C_associated_SNPs_10260 0 0 1 1 0 chromatin 1 0.500233018199123 1 0.999533963601754 hm5C_site_12572 DeepMRMD:1;iRNA_m5C:0.999533963601754 12573 chr13 42887253 42887253 1 + C G rs61755977 42887264 + 42887244 42887284 41 TTATCCTTTCCAACATCAGACAGGTTGGTCCAGTCTAGAAA TTATCCTTTGCAACATCAGACAGGTTGGTCCAGTCTAGAAA < 41bp 1 0.397803189957827 1 0.45147317647934 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP11 ENSG00000023516 CDS Human protein_coding chr13:42887264 chr13:42887253 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_10261 0 0 1 0 2 Nucleus 1 0.500231643806021 1 0.999536712387958 hm5C_site_12573 DeepMRMD:1;iRNA_m5C:0.999536712387958 12574 chr13 42887255 42887255 1 + A G rs61735444 42887264 + 42887244 42887284 41 TTATCCTTTCCAACATCAGACAGGTTGGTCCAGTCTAGAAA TTATCCTTTCCGACATCAGACAGGTTGGTCCAGTCTAGAAA < 41bp 1 0.439581787927054 1 0.340641021728516 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP11 ENSG00000023516 CDS Human protein_coding chr13:42887264 chr13:42887255 synonymous SNV . 0 12 hm5C_associated_SNPs_10262 0 0 1 0 2 Nucleus 1 0.500231830971377 1 0.999536338057245 hm5C_site_12574 DeepMRMD:1;iRNA_m5C:0.999536338057245 12575 chr13 48611863 48611863 1 + G A rs368390627 48611874 + 48611854 48611894 41 CCGCTGCCAGGCGCGTCCTCCCGCGCGCTATGACGGCCAGC CCGCTGCCAAGCGCGTCCTCCCGCGCGCTATGACGGCCAGC < 41bp 1 0.628559768064594 1 0.535849213600159 experiment 0.742880463870813 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUDT15 ENSG00000136143;ENSG00000136159 UTR5 Human other chr13:48611874 chr13:48611863 . . 0 10 hm5C_associated_SNPs_10263 0 0 1 0 0 Ribosome 1 0.500231643408343 0.928301572799682 0.999536713183315 hm5C_site_12575 DeepMRMD:0.928301572799682;iRNA_m5C:0.999536713183315 12576 chr13 48835585 48835585 1 + G A rs9332305 48835570 + 48835550 48835590 41 TTTTATATTTGAATTAGTAACTGTATGAAGTCATAGATAAT TTTTATATTTGAATTAGTAACTGTATGAAGTCATAAATAAT < 41bp 1 0.480951641735946 1 0.200155079364777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITM2B ENSG00000136156 UTR3 Human protein_coding chr13:48835570 chr13:48835585 . . 0 36 hm5C_associated_SNPs_10264 0 0 1 4 0 Ribosome 1 0.500429943145893 1 0.999140113708215 hm5C_site_12576 DeepMRMD:1;iRNA_m5C:0.999140113708215 12577 chr13 50018738 50018738 1 + G C rs114928480 50018732 + 50018712 50018752 41 AAACGCCGCGGAGCCCTCGGCCGCCCGAGCAGGGGCTGGAC AAACGCCGCGGAGCCCTCGGCCGCCCCAGCAGGGGCTGGAC < 41bp 1 0.370415538344189 1 0.708746671676636 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SETDB2;SETDB2-PHF11 ENSG00000136169 UTR5 Human protein_coding chr13:50018732 chr13:50018738 . . 0 27 hm5C_associated_SNPs_10265 0 0 1 0 0 unknown 1 0.500232631209622 0.582506656646728 0.999534737580756 hm5C_site_12577 DeepMRMD:0.582506656646728;iRNA_m5C:0.999534737580756 12578 chr13 52334973 52334973 1 + C T rs139158820 52334978 + 52334958 52334998 41 TGATCTGATGGGAGGCGGAGCCCAGGCAGTAACACTTGCTT TGATCTGATGGGAGGTGGAGCCCAGGCAGTAACACTTGCTT < 41bp 1 0.394841454642294 1 0.169510096311569 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDFY2 ENSG00000139668 UTR3 Human protein_coding chr13:52334978 chr13:52334973 . . 0 16 hm5C_associated_SNPs_10266 0 0 1 0 0 Cytosol 1 0.500231643921131 1 0.999536712157737 hm5C_site_12578 DeepMRMD:1;iRNA_m5C:0.999536712157737 12579 chr13 53216760 53216760 1 + G C rs143517457 53216749 + 53216729 53216769 41 TGAGCAATGGGGAACGCTCACAGACTGTGTGGTAATGAGAG TGAGCAATGGGGAACGCTCACAGACTGTGTGCTAATGAGAG < 41bp 1 0.537697026079391 1 0.146696031093597 experiment 0.924605947841218 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HNRNPA1L2 ENSG00000139675 CDS Human protein_coding chr13:53216749 chr13:53216760 nonsynonymous SNV 0.067 2 32 hm5C_associated_SNPs_10268 0 0 0 0 0 Ribosome 1 0.500215501640443 1 0.999568996719114 hm5C_site_12579 DeepMRMD:1;iRNA_m5C:0.999568996719114 12580 chr13 77570078 77570078 1 + T G rs34481987 77570092 + 77570072 77570112 41 ATTAACTGGCAAGAACTACACAATGGAATGGTATGAACTTT ATTAACGGGCAAGAACTACACAATGGAATGGTATGAACTTT < 41bp 1 0.555996047298502 1 0.283549875020981 experiment 0.888007905402995 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570092 chr13:77570078 synonymous SNV . 0 7 hm5C_associated_SNPs_10269 3 0 1 0 1 Endoplasmic reticulum 1 0.500231643921193 1 0.999536712157614 hm5C_site_12580 DeepMRMD:1;iRNA_m5C:0.999536712157614 not specified not specified 12581 chr13 88329581 88329581 1 + C A rs551160420 88329589 + 88329569 88329609 41 GTTGAATAGCACCGGGGCCCCCGCGAGCTTGGGCGCAGGCG GTTGAATAGCACAGGGGCCCCCGCGAGCTTGGGCGCAGGCG < 41bp 1 0.594597904081095 1 0.339734196662903 experiment 0.81080419183781 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88329589 chr13:88329581 synonymous SNV . 0 13 hm5C_associated_SNPs_10270 0 0 0 0 0 nucleus 1 0.500231645806765 1 0.999536708386469 hm5C_site_12581 DeepMRMD:1;iRNA_m5C:0.999536708386469 12582 chr13 93879770 93879770 1 + G T rs555690920 93879771 + 93879751 93879791 41 GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTC GCTGCTGCTCTCCCTCCCCTCCGGGGCGGATGTGAAGGCTC < 41bp 1 0.638758362848136 1 0.873500227928162 experiment 0.722483274303728 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879771 chr13:93879770 nonsynonymous SNV 0.997 0 20 hm5C_associated_SNPs_10271 0 0 1 0 1 Ribosome 1 0.500231643966793 0.252999544143676 0.999536712066414 hm5C_site_12582 DeepMRMD:0.252999544143676;iRNA_m5C:0.999536712066414 12583 chr13 93879773 93879773 1 + G A rs150023233 93879771 + 93879751 93879791 41 GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTC GCTGCTGCTCTCCCTCCCCGCCAGGGCGGATGTGAAGGCTC < 41bp 1 0.478046033146061 1 0.753415942192078 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879771 chr13:93879773 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_10272 0 0 1 0 1 Ribosome 1 0.500231643924222 0.493168115615844 0.999536712151555 hm5C_site_12583 DeepMRMD:0.493168115615844;iRNA_m5C:0.999536712151555 12584 chr13 96445982 96445982 1 + T C rs188102193 96446001 + 96445981 96446021 41 GTTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCATCAGG GCTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCATCAGG < 41bp 1 0.572235523203986 1 0.0821203589439392 experiment 0.855528953592027 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNAJC3 ENSG00000102580 UTR3 Human protein_coding chr13:96446001 chr13:96445982 . . 0 2 hm5C_associated_SNPs_10274 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12584 DeepMRMD:1;iRNA_m5C:0.999536712157815 12585 chr13 96445982 96445982 1 + T C rs188102193 96446002 + 96445982 96446022 41 TTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCATCAGGT CTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCATCAGGT < 41bp 1 0.483688030270714 1 0.550463497638702 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNAJC3 ENSG00000102580 UTR3 Human protein_coding chr13:96446002 chr13:96445982 . . 0 1 hm5C_associated_SNPs_10275 0 0 1 0 0 Ribosome 1 0.500233988575824 0.899073004722596 0.999532022848352 hm5C_site_12585 DeepMRMD:0.899073004722596;iRNA_m5C:0.999532022848352 12586 chr13 96445995 96445995 1 + C A rs532697934 96446001 + 96445981 96446021 41 GTTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCATCAGG GTTGGGATTACAGGAGTGAGCCACTGCGCCTGGCCATCAGG < 41bp 1 0.559463053548967 1 0.0742360651493073 experiment 0.881073892902067 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNAJC3 ENSG00000102580 UTR3 Human protein_coding chr13:96446001 chr13:96445995 . . 0 15 hm5C_associated_SNPs_10276 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12586 DeepMRMD:1;iRNA_m5C:0.999536712157815 12587 chr13 96445995 96445995 1 + C A rs532697934 96446002 + 96445982 96446022 41 TTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCATCAGGT TTGGGATTACAGGAGTGAGCCACTGCGCCTGGCCATCAGGT < 41bp 1 0.473719794266934 1 0.432509332895279 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNAJC3 ENSG00000102580 UTR3 Human protein_coding chr13:96446002 chr13:96445995 . . 0 14 hm5C_associated_SNPs_10277 0 0 1 0 0 Ribosome 1 0.500231675465333 1 0.999536649069334 hm5C_site_12587 DeepMRMD:1;iRNA_m5C:0.999536649069334 12588 chr13 97928615 97928615 1 + T C rs36010428 97928608 + 97928588 97928628 41 ATGCAAATTTGCTCATCCCCCCAAAAGTTGTCAGGTTGAAA ATGCAAATTTGCTCATCCCCCCAAAAGCTGTCAGGTTGAAA < 41bp 1 0.230893629327467 1 0.350593984127045 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MBNL2 ENSG00000139793 CDS Human protein_coding chr13:97928608 chr13:97928615 synonymous SNV . 0 28 hm5C_associated_SNPs_10278 0 0 1 0 1 Cytosol 1 0.500231643921139 1 0.999536712157723 hm5C_site_12588 DeepMRMD:1;iRNA_m5C:0.999536712157723 12589 chr13 98674153 98674153 1 + T C rs78079018 98674170 + 98674150 98674190 41 TGTTTTTGAGCAAAAGAGATCGGTAGTGTTGTGTGTAGGCC TGTCTTTGAGCAAAAGAGATCGGTAGTGTTGTGTGTAGGCC < 41bp 1 0.577207313145945 1 0.404772222042084 experiment 0.845585373708111 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO5 ENSG00000065150 UTR3 Human protein_coding chr13:98674170 chr13:98674153 . . 0 4 hm5C_associated_SNPs_10279 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_12589 DeepMRMD:1;iRNA_m5C:0.999536712157814 12590 chr13 99098964 99098964 1 + C T rs61730897 99098975 + 99098955 99098995 41 CTACTCGCTCACCATCCCCTCTGAGTCCGAGAACATCCAGA CTACTCGCTTACCATCCCCTCTGAGTCCGAGAACATCCAGA < 41bp 1 0.226094483127096 1 0.0672430396080017 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098975 chr13:99098964 synonymous SNV . 0 10 hm5C_associated_SNPs_10281 0 0 1 0 1 Cytosol 1 0.500238179683665 1 0.99952364063267 hm5C_site_12590 DeepMRMD:1;iRNA_m5C:0.99952364063267 12591 chr13 99098964 99098964 1 + C T rs61730897 99098981 + 99098961 99099001 41 GCTCACCATCCCCTCTGAGTCCGAGAACATCCAGAAAGACT GCTTACCATCCCCTCTGAGTCCGAGAACATCCAGAAAGACT < 41bp 1 0.158904159121107 1 0.635285198688507 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098981 chr13:99098964 synonymous SNV . 0 4 hm5C_associated_SNPs_10282 0 0 1 0 1 Cytosol 1 0.500231643860091 0.729429602622986 0.999536712279818 hm5C_site_12591 DeepMRMD:0.729429602622986;iRNA_m5C:0.999536712279818 12592 chr13 99858020 99858020 1 + C T rs371286261 99858023 + 99858003 99858043 41 GATCGCCAGAGTTGATTCGGCTGATCTGGCTGGCTAGGCGG GATCGCCAGAGTTGATTTGGCTGATCTGGCTGGCTAGGCGG < 41bp 1 0.350319309469514 1 0.0824285745620728 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858023 chr13:99858020 . . 0 18 hm5C_associated_SNPs_10283 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12592 DeepMRMD:1;iRNA_m5C:0.999536712157815 12593 chr13 99858020 99858020 1 + C T rs371286261 99858028 + 99858008 99858048 41 CCAGAGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTC CCAGAGTTGATTTGGCTGATCTGGCTGGCTAGGCGGGTGTC < 41bp 1 0.343567775156963 1 0.236833065748215 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858028 chr13:99858020 . . 0 13 hm5C_associated_SNPs_10284 0 0 1 0 0 Endoplasmic reticulum 1 0.500231632249195 1 0.99953673550161 hm5C_site_12593 DeepMRMD:1;iRNA_m5C:0.99953673550161 12594 chr13 99858020 99858020 1 + C T rs371286261 99858032 + 99858012 99858052 41 AGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCT AGTTGATTTGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCT < 41bp 1 0.407140424310809 1 0.76171213388443 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858032 chr13:99858020 . . 0 9 hm5C_associated_SNPs_10285 0 0 1 0 0 Endoplasmic reticulum 1 0.500231614460417 0.47657573223114 0.999536771079167 hm5C_site_12594 DeepMRMD:0.47657573223114;iRNA_m5C:0.999536771079167 12595 chr13 99858020 99858020 1 + C T rs371286261 99858036 + 99858016 99858056 41 GATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCTTCCT GATTTGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCTTCCT < 41bp 1 0.504988912563655 1 0.424063354730606 experiment 0.990022174872689 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858036 chr13:99858020 . . 0 5 hm5C_associated_SNPs_10286 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921015 1 0.99953671215797 hm5C_site_12595 DeepMRMD:1;iRNA_m5C:0.99953671215797 12596 chr13 99858046 99858046 1 + G A rs555309472 99858028 + 99858008 99858048 41 CCAGAGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTC CCAGAGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTATC < 41bp 1 0.335189914539567 1 0.165576159954071 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858028 chr13:99858046 . . 0 39 hm5C_associated_SNPs_10287 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164474732 1 0.99953671050536 hm5C_site_12596 DeepMRMD:1;iRNA_m5C:0.99953671050536 12597 chr13 99858046 99858046 1 + G A rs555309472 99858032 + 99858012 99858052 41 AGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCT AGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTATCCCCT < 41bp 1 0.403272012858376 1 0.71356999874115 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858032 chr13:99858046 . . 0 35 hm5C_associated_SNPs_10288 0 0 1 0 0 Endoplasmic reticulum 1 0.500231639644819 0.5728600025177 0.999536720710363 hm5C_site_12597 DeepMRMD:0.5728600025177;iRNA_m5C:0.999536720710363 12598 chr13 99858046 99858046 1 + G A rs555309472 99858036 + 99858016 99858056 41 GATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCTTCCT GATTCGGCTGATCTGGCTGGCTAGGCGGGTATCCCCTTCCT < 41bp 1 0.575977548825766 1 0.358188927173615 experiment 0.848044902348468 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858036 chr13:99858046 . . 0 31 hm5C_associated_SNPs_10289 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_12598 DeepMRMD:1;iRNA_m5C:0.999536712157816 12599 chr13 99858046 99858046 1 + G A rs555309472 99858048 + 99858028 99858068 41 CTGGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGTTC CTGGCTGGCTAGGCGGGTATCCCCTTCCTCCCTCACCGTTC < 41bp 1 0.208114771709143 1 0.0229906737804413 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858048 chr13:99858046 . . 0 19 hm5C_associated_SNPs_10291 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164392109 1 0.99953671215782 hm5C_site_12599 DeepMRMD:1;iRNA_m5C:0.99953671215782 12600 chr13 99858046 99858046 1 + G A rs555309472 99858049 + 99858029 99858069 41 TGGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGTTCC TGGCTGGCTAGGCGGGTATCCCCTTCCTCCCTCACCGTTCC < 41bp 1 0.0718417248198117 1 0.024636447429657 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858049 chr13:99858046 . . 0 18 hm5C_associated_SNPs_10292 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643931868 1 0.999536712136263 hm5C_site_12600 DeepMRMD:1;iRNA_m5C:0.999536712136263 12601 chr13 99858046 99858046 1 + G A rs555309472 99858050 + 99858030 99858070 41 GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGTTCCA GGCTGGCTAGGCGGGTATCCCCTTCCTCCCTCACCGTTCCA < 41bp 1 0.0273707366169604 1 0.0368922352790833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858050 chr13:99858046 . . 0 17 hm5C_associated_SNPs_10293 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12601 DeepMRMD:1;iRNA_m5C:0.999536712157815 12602 chr13 99858046 99858046 1 + G A rs555309472 99858051 + 99858031 99858071 41 GCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGTTCCAT GCTGGCTAGGCGGGTATCCCCTTCCTCCCTCACCGTTCCAT < 41bp 1 0.0989960928360136 1 0.0733600854873657 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858051 chr13:99858046 . . 0 16 hm5C_associated_SNPs_10294 0 0 1 0 0 Endoplasmic reticulum 1 0.500231654872736 1 0.999536690254528 hm5C_site_12602 DeepMRMD:1;iRNA_m5C:0.999536690254528 12603 chr13 99858046 99858046 1 + G A rs555309472 99858054 + 99858034 99858074 41 GGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGTTCCATGTG GGCTAGGCGGGTATCCCCTTCCTCCCTCACCGTTCCATGTG < 41bp 1 0.0270022208305621 1 0.196986734867096 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858054 chr13:99858046 . . 0 13 hm5C_associated_SNPs_10295 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12603 DeepMRMD:1;iRNA_m5C:0.999536712157815 12604 chr13 99858046 99858046 1 + G A rs555309472 99858055 + 99858035 99858075 41 GCTAGGCGGGTGTCCCCTTCCTCCCTCACCGTTCCATGTGC GCTAGGCGGGTATCCCCTTCCTCCCTCACCGTTCCATGTGC < 41bp 1 0.238180614529389 1 0.763979136943817 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858055 chr13:99858046 . . 0 12 hm5C_associated_SNPs_10296 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 0.472041726112366 0.999536712157814 hm5C_site_12604 DeepMRMD:0.472041726112366;iRNA_m5C:0.999536712157814 12605 chr13 99858046 99858046 1 + G A rs555309472 99858057 + 99858037 99858077 41 TAGGCGGGTGTCCCCTTCCTCCCTCACCGTTCCATGTGCGT TAGGCGGGTATCCCCTTCCTCCCTCACCGTTCCATGTGCGT < 41bp 1 0.0243708250603468 1 0.0741312205791473 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858057 chr13:99858046 . . 0 10 hm5C_associated_SNPs_10297 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12605 DeepMRMD:1;iRNA_m5C:0.999536712157815 12606 chr13 99858046 99858046 1 + G A rs555309472 99858058 + 99858038 99858078 41 AGGCGGGTGTCCCCTTCCTCCCTCACCGTTCCATGTGCGTC AGGCGGGTATCCCCTTCCTCCCTCACCGTTCCATGTGCGTC < 41bp 1 0.0677541728543597 1 0.0458369851112366 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858058 chr13:99858046 . . 0 9 hm5C_associated_SNPs_10298 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12606 DeepMRMD:1;iRNA_m5C:0.999536712157815 12607 chr13 99858046 99858046 1 + G A rs555309472 99858059 + 99858039 99858079 41 GGCGGGTGTCCCCTTCCTCCCTCACCGTTCCATGTGCGTCC GGCGGGTATCCCCTTCCTCCCTCACCGTTCCATGTGCGTCC < 41bp 1 0.0939136706441431 1 0.0660565495491028 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858059 chr13:99858046 . . 0 8 hm5C_associated_SNPs_10299 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12607 DeepMRMD:1;iRNA_m5C:0.999536712157815 12608 chr13 99858046 99858046 1 + G A rs555309472 99858061 + 99858041 99858081 41 CGGGTGTCCCCTTCCTCCCTCACCGTTCCATGTGCGTCCCT CGGGTATCCCCTTCCTCCCTCACCGTTCCATGTGCGTCCCT < 41bp 1 0.266713194540398 1 0.429829329252243 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858061 chr13:99858046 . . 0 6 hm5C_associated_SNPs_10300 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12608 DeepMRMD:1;iRNA_m5C:0.999536712157815 12609 chr13 99858046 99858046 1 + G A rs555309472 99858063 + 99858043 99858083 41 GGTGTCCCCTTCCTCCCTCACCGTTCCATGTGCGTCCCTCC GGTATCCCCTTCCTCCCTCACCGTTCCATGTGCGTCCCTCC < 41bp 1 0.0656934148423002 1 0.159042060375214 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858063 chr13:99858046 . . 0 4 hm5C_associated_SNPs_10301 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12609 DeepMRMD:1;iRNA_m5C:0.999536712157815 12610 chr13 99858046 99858046 1 + G A rs555309472 99858064 + 99858044 99858084 41 GTGTCCCCTTCCTCCCTCACCGTTCCATGTGCGTCCCTCCC GTATCCCCTTCCTCCCTCACCGTTCCATGTGCGTCCCTCCC < 41bp 1 0.0297792016255691 1 0.187615215778351 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858064 chr13:99858046 . . 0 3 hm5C_associated_SNPs_10302 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643930763 1 0.999536712138474 hm5C_site_12610 DeepMRMD:1;iRNA_m5C:0.999536712138474 12611 chr13 99858103 99858103 1 + G A rs71437997 99858083 + 99858063 99858103 41 CCGTTCCATGTGCGTCCCTCCCGAAGCTGCGTGCTCGGTCG CCGTTCCATGTGCGTCCCTCCCGAAGCTGCGTGCTCGGTCA < 41bp 1 0.308622438398537 1 0.87611335515976 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858083 chr13:99858103 . . 0 41 hm5C_associated_SNPs_10303 0 0 1 0 0 Endoplasmic reticulum 1 0.50023131563187 0.24777328968048 0.99953736873626 hm5C_site_12611 DeepMRMD:0.24777328968048;iRNA_m5C:0.99953736873626 12612 chr13 99858103 99858103 1 + G A rs71437997 99858084 + 99858064 99858104 41 CGTTCCATGTGCGTCCCTCCCGAAGCTGCGTGCTCGGTCGA CGTTCCATGTGCGTCCCTCCCGAAGCTGCGTGCTCGGTCAA < 41bp 1 0.592548716480328 1 0.69977879524231 experiment 0.814902567039345 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858084 chr13:99858103 . . 0 40 hm5C_associated_SNPs_10304 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921064 0.60044240951538 0.999536712157872 hm5C_site_12612 DeepMRMD:0.60044240951538;iRNA_m5C:0.999536712157872 12613 chr13 99858103 99858103 1 + G A rs71437997 99858089 + 99858069 99858109 41 CATGTGCGTCCCTCCCGAAGCTGCGTGCTCGGTCGAAGAGG CATGTGCGTCCCTCCCGAAGCTGCGTGCTCGGTCAAAGAGG < 41bp 1 0.445202357658522 1 0.340895116329193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858089 chr13:99858103 . . 0 35 hm5C_associated_SNPs_10305 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644011292 1 0.999536711977416 hm5C_site_12613 DeepMRMD:1;iRNA_m5C:0.999536711977416 12614 chr13 99858103 99858103 1 + G A rs71437997 99858092 + 99858072 99858112 41 GTGCGTCCCTCCCGAAGCTGCGTGCTCGGTCGAAGAGGACG GTGCGTCCCTCCCGAAGCTGCGTGCTCGGTCAAAGAGGACG < 41bp 1 0.124102025066052 1 0.0572750866413116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858092 chr13:99858103 . . 0 32 hm5C_associated_SNPs_10306 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920737 1 0.999536712158525 hm5C_site_12614 DeepMRMD:1;iRNA_m5C:0.999536712158525 12615 chr13 99858103 99858103 1 + G A rs71437997 99858096 + 99858076 99858116 41 GTCCCTCCCGAAGCTGCGTGCTCGGTCGAAGAGGACGACCA GTCCCTCCCGAAGCTGCGTGCTCGGTCAAAGAGGACGACCA < 41bp 1 0.469441623082268 1 0.764630556106567 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858096 chr13:99858103 . . 0 28 hm5C_associated_SNPs_10307 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643660608 0.470738887786866 0.999536712678783 hm5C_site_12615 DeepMRMD:0.470738887786866;iRNA_m5C:0.999536712678783 12616 chr13 99858103 99858103 1 + G A rs71437997 99858098 + 99858078 99858118 41 CCCTCCCGAAGCTGCGTGCTCGGTCGAAGAGGACGACCATC CCCTCCCGAAGCTGCGTGCTCGGTCAAAGAGGACGACCATC < 41bp 1 0.226513855418839 1 0.27543431520462 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858098 chr13:99858103 . . 0 26 hm5C_associated_SNPs_10308 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644068006 1 0.999536711863989 hm5C_site_12616 DeepMRMD:1;iRNA_m5C:0.999536711863989 12617 chr13 99858103 99858103 1 + G A rs71437997 99858102 + 99858082 99858122 41 CCCGAAGCTGCGTGCTCGGTCGAAGAGGACGACCATCCCCG CCCGAAGCTGCGTGCTCGGTCAAAGAGGACGACCATCCCCG < 41bp 1 0.373220479447811 1 0.674077153205872 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858102 chr13:99858103 . . 0 22 hm5C_associated_SNPs_10309 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643945643 0.651845693588256 0.999536712108715 hm5C_site_12617 DeepMRMD:0.651845693588256;iRNA_m5C:0.999536712108715 12618 chr13 99858103 99858103 1 + G A rs71437997 99858111 + 99858091 99858131 41 GCGTGCTCGGTCGAAGAGGACGACCATCCCCGATAGAGGAG GCGTGCTCGGTCAAAGAGGACGACCATCCCCGATAGAGGAG < 41bp 1 0.152248208816521 1 0.11791804432869 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858111 chr13:99858103 . . 0 13 hm5C_associated_SNPs_10310 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644664545 1 0.999536710670909 hm5C_site_12618 DeepMRMD:1;iRNA_m5C:0.999536710670909 12619 chr13 99858103 99858103 1 + G A rs71437997 99858114 + 99858094 99858134 41 TGCTCGGTCGAAGAGGACGACCATCCCCGATAGAGGAGGAC TGCTCGGTCAAAGAGGACGACCATCCCCGATAGAGGAGGAC < 41bp 1 0.010953820693113 1 0.12106716632843 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858114 chr13:99858103 . . 0 10 hm5C_associated_SNPs_10311 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643935082 1 0.999536712129836 hm5C_site_12619 DeepMRMD:1;iRNA_m5C:0.999536712129836 12620 chr13 99858103 99858103 1 + G A rs71437997 99858115 + 99858095 99858135 41 GCTCGGTCGAAGAGGACGACCATCCCCGATAGAGGAGGACC GCTCGGTCAAAGAGGACGACCATCCCCGATAGAGGAGGACC < 41bp 1 0.0517104702241052 1 0.128856301307678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858115 chr13:99858103 . . 0 9 hm5C_associated_SNPs_10312 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643932552 1 0.999536712134897 hm5C_site_12620 DeepMRMD:1;iRNA_m5C:0.999536712134897 12621 chr13 99858103 99858103 1 + G A rs71437997 99858118 + 99858098 99858138 41 CGGTCGAAGAGGACGACCATCCCCGATAGAGGAGGACCGGT CGGTCAAAGAGGACGACCATCCCCGATAGAGGAGGACCGGT < 41bp 1 0.264440459109917 1 0.304452836513519 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858118 chr13:99858103 . . 0 6 hm5C_associated_SNPs_10313 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644007722 1 0.999536711984557 hm5C_site_12621 DeepMRMD:1;iRNA_m5C:0.999536711984557 12622 chr13 99858103 99858103 1 + G A rs71437997 99858119 + 99858099 99858139 41 GGTCGAAGAGGACGACCATCCCCGATAGAGGAGGACCGGTC GGTCAAAGAGGACGACCATCCCCGATAGAGGAGGACCGGTC < 41bp 1 0.610727497001714 1 0.513557255268097 experiment 0.778545005996573 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858119 chr13:99858103 . . 0 5 hm5C_associated_SNPs_10314 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921217 0.972885489463806 0.999536712157565 hm5C_site_12622 DeepMRMD:0.972885489463806;iRNA_m5C:0.999536712157565 12623 chr13 99858103 99858103 1 + G A rs71437997 99858120 + 99858100 99858140 41 GTCGAAGAGGACGACCATCCCCGATAGAGGAGGACCGGTCT GTCAAAGAGGACGACCATCCCCGATAGAGGAGGACCGGTCT < 41bp 1 0.274228353659278 1 0.324617326259613 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858120 chr13:99858103 . . 0 4 hm5C_associated_SNPs_10315 0 0 1 0 0 Endoplasmic reticulum 1 0.50023155106984 1 0.99953689786032 hm5C_site_12623 DeepMRMD:1;iRNA_m5C:0.99953689786032 12624 chr13 99858103 99858103 1 + G A rs71437997 99858121 + 99858101 99858141 41 TCGAAGAGGACGACCATCCCCGATAGAGGAGGACCGGTCTT TCAAAGAGGACGACCATCCCCGATAGAGGAGGACCGGTCTT < 41bp 1 0.50630125688946 1 0.450604975223541 experiment 0.98739748622108 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858121 chr13:99858103 . . 0 3 hm5C_associated_SNPs_10316 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_12624 DeepMRMD:1;iRNA_m5C:0.999536712157816 12625 chr13 99858111 99858111 1 + C T rs137933235 99858092 + 99858072 99858112 41 GTGCGTCCCTCCCGAAGCTGCGTGCTCGGTCGAAGAGGACG GTGCGTCCCTCCCGAAGCTGCGTGCTCGGTCGAAGAGGATG < 41bp 1 0.125238798056361 1 0.0590564012527466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858092 chr13:99858111 . . 0 40 hm5C_associated_SNPs_10317 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921223 1 0.999536712157554 hm5C_site_12625 DeepMRMD:1;iRNA_m5C:0.999536712157554 12626 chr13 99858111 99858111 1 + C T rs137933235 99858096 + 99858076 99858116 41 GTCCCTCCCGAAGCTGCGTGCTCGGTCGAAGAGGACGACCA GTCCCTCCCGAAGCTGCGTGCTCGGTCGAAGAGGATGACCA < 41bp 1 0.415618513969267 1 0.475698798894882 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858096 chr13:99858111 . . 0 36 hm5C_associated_SNPs_10318 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921127 1 0.999536712157746 hm5C_site_12626 DeepMRMD:1;iRNA_m5C:0.999536712157746 12627 chr13 99858111 99858111 1 + C T rs137933235 99858098 + 99858078 99858118 41 CCCTCCCGAAGCTGCGTGCTCGGTCGAAGAGGACGACCATC CCCTCCCGAAGCTGCGTGCTCGGTCGAAGAGGATGACCATC < 41bp 1 0.264125548363182 1 0.247154384851456 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858098 chr13:99858111 . . 0 34 hm5C_associated_SNPs_10319 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921104 1 0.999536712157792 hm5C_site_12627 DeepMRMD:1;iRNA_m5C:0.999536712157792 12628 chr13 99858111 99858111 1 + C T rs137933235 99858102 + 99858082 99858122 41 CCCGAAGCTGCGTGCTCGGTCGAAGAGGACGACCATCCCCG CCCGAAGCTGCGTGCTCGGTCGAAGAGGATGACCATCCCCG < 41bp 1 0.397734180576725 1 0.805132031440735 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858102 chr13:99858111 . . 0 30 hm5C_associated_SNPs_10320 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921246 0.38973593711853 0.999536712157509 hm5C_site_12628 DeepMRMD:0.38973593711853;iRNA_m5C:0.999536712157509 12629 chr13 99858111 99858111 1 + C T rs137933235 99858114 + 99858094 99858134 41 TGCTCGGTCGAAGAGGACGACCATCCCCGATAGAGGAGGAC TGCTCGGTCGAAGAGGATGACCATCCCCGATAGAGGAGGAC < 41bp 1 0.0179109233984096 1 0.0773991942405701 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858114 chr13:99858111 . . 0 18 hm5C_associated_SNPs_10321 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921089 1 0.999536712157822 hm5C_site_12629 DeepMRMD:1;iRNA_m5C:0.999536712157822 12630 chr13 99858111 99858111 1 + C T rs137933235 99858115 + 99858095 99858135 41 GCTCGGTCGAAGAGGACGACCATCCCCGATAGAGGAGGACC GCTCGGTCGAAGAGGATGACCATCCCCGATAGAGGAGGACC < 41bp 1 0.0751679674541799 1 0.108453810214996 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858115 chr13:99858111 . . 0 17 hm5C_associated_SNPs_10322 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_12630 DeepMRMD:1;iRNA_m5C:0.999536712157815 12631 chr13 99858111 99858111 1 + C T rs137933235 99858118 + 99858098 99858138 41 CGGTCGAAGAGGACGACCATCCCCGATAGAGGAGGACCGGT CGGTCGAAGAGGATGACCATCCCCGATAGAGGAGGACCGGT < 41bp 1 0.257724244051899 1 0.180172741413116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858118 chr13:99858111 . . 0 14 hm5C_associated_SNPs_10323 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643922856 1 0.999536712154288 hm5C_site_12631 DeepMRMD:1;iRNA_m5C:0.999536712154288 12632 chr13 99858111 99858111 1 + C T rs137933235 99858119 + 99858099 99858139 41 GGTCGAAGAGGACGACCATCCCCGATAGAGGAGGACCGGTC GGTCGAAGAGGATGACCATCCCCGATAGAGGAGGACCGGTC < 41bp 1 0.606573023867141 1 0.474958062171936 experiment 0.786853952265719 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858119 chr13:99858111 . . 0 13 hm5C_associated_SNPs_10324 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643922768 1 0.999536712154464 hm5C_site_12632 DeepMRMD:1;iRNA_m5C:0.999536712154464 12633 chr13 99858111 99858111 1 + C T rs137933235 99858120 + 99858100 99858140 41 GTCGAAGAGGACGACCATCCCCGATAGAGGAGGACCGGTCT GTCGAAGAGGATGACCATCCCCGATAGAGGAGGACCGGTCT < 41bp 1 0.247514442954889 1 0.227528750896454 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858120 chr13:99858111 . . 0 12 hm5C_associated_SNPs_10325 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643512854 1 0.999536712974292 hm5C_site_12633 DeepMRMD:1;iRNA_m5C:0.999536712974292 12634 chr13 99858111 99858111 1 + C T rs137933235 99858121 + 99858101 99858141 41 TCGAAGAGGACGACCATCCCCGATAGAGGAGGACCGGTCTT TCGAAGAGGATGACCATCCCCGATAGAGGAGGACCGGTCTT < 41bp 1 0.49281934361569 1 0.39812359213829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858121 chr13:99858111 . . 0 11 hm5C_associated_SNPs_10326 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12634 DeepMRMD:1;iRNA_m5C:0.999536712157815 12635 chr13 99858156 99858156 1 + C G rs112488929 99858139 + 99858119 99858159 41 CCCGATAGAGGAGGACCGGTCTTTGGTCAAGGGTATACGAG CCCGATAGAGGAGGACCGGTCTTTGGTCAAGGGTATAGGAG < 41bp 1 0.0984740067509926 1 0.0653342306613922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858139 chr13:99858156 . . 0 38 hm5C_associated_SNPs_10327 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_12635 DeepMRMD:1;iRNA_m5C:0.999536712157815 12636 chr13 99858156 99858156 1 + C G rs112488929 99858146 + 99858126 99858166 41 GAGGAGGACCGGTCTTTGGTCAAGGGTATACGAGTAGCTGC GAGGAGGACCGGTCTTTGGTCAAGGGTATAGGAGTAGCTGC < 41bp 1 0.641010627738112 1 0.952788889408112 experiment 0.717978744523776 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858146 chr13:99858156 . . 0 31 hm5C_associated_SNPs_10328 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164459584 0.094422221183776 0.99953671080832 hm5C_site_12636 DeepMRMD:0.094422221183776;iRNA_m5C:0.99953671080832 12637 chr13 99858156 99858156 1 + C G rs112488929 99858163 + 99858143 99858183 41 GGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCTAGAACC GGTCAAGGGTATAGGAGTAGCTGCGCTCCCCTGCTAGAACC < 41bp 1 0.629374306133969 1 0.313692390918732 experiment 0.741251387732061 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858163 chr13:99858156 . . 0 14 hm5C_associated_SNPs_10329 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920579 1 0.999536712158841 hm5C_site_12637 DeepMRMD:1;iRNA_m5C:0.999536712158841 12638 chr13 99858156 99858156 1 + C G rs112488929 99858166 + 99858146 99858186 41 CAAGGGTATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCC CAAGGGTATAGGAGTAGCTGCGCTCCCCTGCTAGAACCTCC < 41bp 1 0.0392209209569217 1 0.0925136804580688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858166 chr13:99858156 . . 0 11 hm5C_associated_SNPs_10330 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12638 DeepMRMD:1;iRNA_m5C:0.999536712157815 12639 chr13 99858156 99858156 1 + C G rs112488929 99858168 + 99858148 99858188 41 AGGGTATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAA AGGGTATAGGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAA < 41bp 1 0.125417101667153 1 0.0918129980564117 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858168 chr13:99858156 . . 0 9 hm5C_associated_SNPs_10331 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12639 DeepMRMD:1;iRNA_m5C:0.999536712157815 12640 chr13 99858156 99858156 1 + C G rs112488929 99858170 + 99858150 99858190 41 GGTATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAAC GGTATAGGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAAC < 41bp 1 0.126726750489965 1 0.259377956390381 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858170 chr13:99858156 . . 0 7 hm5C_associated_SNPs_10332 0 0 1 0 0 Endoplasmic reticulum 1 0.500232081187661 1 0.999535837624678 hm5C_site_12640 DeepMRMD:1;iRNA_m5C:0.999535837624678 12641 chr13 99858156 99858156 1 + C G rs112488929 99858171 + 99858151 99858191 41 GTATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACA GTATAGGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACA < 41bp 1 0.0839134460701147 1 0.0664830505847931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858171 chr13:99858156 . . 0 6 hm5C_associated_SNPs_10333 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643770075 1 0.999536712459851 hm5C_site_12641 DeepMRMD:1;iRNA_m5C:0.999536712459851 12642 chr13 99858156 99858156 1 + C G rs112488929 99858172 + 99858152 99858192 41 TATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAA TATAGGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAA < 41bp 1 0.0897062316640422 1 0.453904062509537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858172 chr13:99858156 . . 0 5 hm5C_associated_SNPs_10334 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12642 DeepMRMD:1;iRNA_m5C:0.999536712157815 12643 chr13 99858156 99858156 1 + C G rs112488929 99858173 + 99858153 99858193 41 ATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAAG ATAGGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAAG < 41bp 1 0.178976804963453 1 0.359268248081207 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858173 chr13:99858156 . . 0 4 hm5C_associated_SNPs_10335 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643881345 1 0.99953671223731 hm5C_site_12643 DeepMRMD:1;iRNA_m5C:0.99953671223731 12644 chr13 99858156 99858156 1 + C G rs112488929 99858176 + 99858156 99858196 41 CGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTC GGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTC < 41bp 1 0.330871901350119 1 0.633020758628845 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858176 chr13:99858156 . . 0 1 hm5C_associated_SNPs_10336 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.73395848274231 0.999536712157815 hm5C_site_12644 DeepMRMD:0.73395848274231;iRNA_m5C:0.999536712157815 12645 chr13 99858202 99858202 1 + A G rs561748998 99858182 + 99858162 99858202 41 GCTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAAGA GCTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAAGG < 41bp 1 0.0316723616399159 1 0.298217564821243 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858182 chr13:99858202 . . 0 41 hm5C_associated_SNPs_10337 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12645 DeepMRMD:1;iRNA_m5C:0.999536712157815 12646 chr13 99858202 99858202 1 + A G rs561748998 99858183 + 99858163 99858203 41 CTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAAGAT CTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAAGGT < 41bp 1 0.29877089669212 1 0.960909247398376 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858183 chr13:99858202 . . 0 40 hm5C_associated_SNPs_10338 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644763413 0.078181505203248 0.999536710473174 hm5C_site_12646 DeepMRMD:0.078181505203248;iRNA_m5C:0.999536710473174 12647 chr13 99858202 99858202 1 + A G rs561748998 99858185 + 99858165 99858205 41 GCGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAAGATAG GCGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAAGGTAG < 41bp 1 0.109856718654543 1 0.389573156833649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858185 chr13:99858202 . . 0 38 hm5C_associated_SNPs_10339 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643925607 1 0.999536712148787 hm5C_site_12647 DeepMRMD:1;iRNA_m5C:0.999536712148787 12648 chr13 99858202 99858202 1 + A G rs561748998 99858186 + 99858166 99858206 41 CGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAAGATAGA CGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAAGGTAGA < 41bp 1 0.0285659928110637 1 0.15082785487175 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858186 chr13:99858202 . . 0 37 hm5C_associated_SNPs_10340 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12648 DeepMRMD:1;iRNA_m5C:0.999536712157815 12649 chr13 99858202 99858202 1 + A G rs561748998 99858190 + 99858170 99858210 41 CCCCTGCTAGAACCTCCAAACAAGCTCTCAAGATAGAAGGA CCCCTGCTAGAACCTCCAAACAAGCTCTCAAGGTAGAAGGA < 41bp 1 0.11376702558112 1 0.594041764736176 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBAC2 ENSG00000201793 ncRNA_exonic Human misc_RNA chr13:99858190 chr13:99858202 . . 0 33 hm5C_associated_SNPs_10341 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.811916470527648 0.999536712157815 hm5C_site_12649 DeepMRMD:0.811916470527648;iRNA_m5C:0.999536712157815 12650 chr13 100920951 100920951 1 + T C rs143838146 100920958 + 100920938 100920978 41 TTCAGGTTCTAGGTGATAAACATGGGAATGCTTTATGGCTT TTCAGGTTCTAGGCGATAAACATGGGAATGCTTTATGGCTT < 41bp 1 0.500076257460304 1 0.340781539678574 experiment 0.999847485079391 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:100920958 chr13:100920951 synonymous SNV . 0 14 hm5C_associated_SNPs_10343 1 0 1 0 2 Endoplasmic reticulum 1 0.500231643903568 1 0.999536712192864 hm5C_site_12650 DeepMRMD:1;iRNA_m5C:0.999536712192864 not specified not specified 12651 chr13 101020827 101020827 1 + C A rs16957356 101020818 + 101020798 101020838 41 AGTAGCATCAAACAATGGGTCAGTGTTCTCGGTGAGTTTTC AGTAGCATCAAACAATGGGTCAGTGTTCTAGGTGAGTTTTC < 41bp 1 0.183164914706326 1 0.501634180545807 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:101020818 chr13:101020827 stopgain 0.085 0 30 hm5C_associated_SNPs_10344 0 0 0 0 1 Endoplasmic reticulum 1 0.500231640003423 0.996731638908386 0.999536719993154 hm5C_site_12651 DeepMRMD:0.996731638908386;iRNA_m5C:0.999536719993154 12652 chr13 107029640 107029640 1 + G T rs181638553 107029624 + 107029604 107029644 41 GATTTATGTTAAATTATCACCTTGACTACTGCTATAGAACG GATTTATGTTAAATTATCACCTTGACTACTGCTATATAACG < 41bp 1 0.32598894788329 1 0.395396798849106 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LINC00460 ENSG00000233532 ncRNA_exonic Human lincRNA chr13:107029624 chr13:107029640 . . 0 37 hm5C_associated_SNPs_10346 0 0 0 1 0 unknown 1 0.500231643921787 1 0.999536712156425 hm5C_site_12652 DeepMRMD:1;iRNA_m5C:0.999536712156425 12653 chr13 110959787 110959787 1 + A G rs35466678 110959786 + 110959766 110959806 41 CCGGCGCCCAGAGAGCCCAGCAAGGCCGGCCGCCCTGCCGG CCGGCGCCCAGAGAGCCCAGCGAGGCCGGCCGCCCTGCCGG < 41bp 1 0.691836090111128 1 0.877061486244202 experiment 0.616327819777744 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 UTR5 Human protein_coding chr13:110959786 chr13:110959787 . . 0 22 hm5C_associated_SNPs_10347 3 0 1 0 1 Cytosol 1 0.500231643919754 0.245877027511596 0.999536712160492 hm5C_site_12653 DeepMRMD:0.245877027511596;iRNA_m5C:0.999536712160492 Angiopathy, hereditary, with nephropathy, aneurysms, and muscle cramps Angiopathy, hereditary, with nephropathy, aneurysms, and muscle cramps 12654 chr13 111111173 111111173 1 + G A rs7990214 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ACGAAGCTATCAAAGGTCTTCCAGGACTGCCAGGACCCAAG < 41bp 1 0.185326704785609 1 0.571271419525146 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111173 synonymous SNV . 0 23 hm5C_associated_SNPs_10348 1 0 1 0 1 Cytosol 1 0.500231643921092 0.857457160949708 0.999536712157815 hm5C_site_12654 DeepMRMD:0.857457160949708;iRNA_m5C:0.999536712157815 Porencephaly Porencephaly 12655 chr13 111111173 111111173 1 + G A rs7990214 111111172 + 111111152 111111192 41 CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAGG CGAAGCTATCAAAGGTCTTCCAGGACTGCCAGGACCCAAGG < 41bp 1 0.666985546879392 1 0.862051606178284 experiment 0.666028906241216 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111172 chr13:111111173 synonymous SNV . 0 22 hm5C_associated_SNPs_10349 1 0 1 0 1 Cytosol 1 0.500231643905285 0.275896787643432 0.999536712189431 hm5C_site_12655 DeepMRMD:0.275896787643432;iRNA_m5C:0.999536712189431 Porencephaly Porencephaly 12656 chr13 111111185 111111185 1 + A G rs144654464 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGGCCCAAG < 41bp 1 0.323326514201527 1 0.836434900760651 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111185 synonymous SNV . 0 35 hm5C_associated_SNPs_10350 0 0 0 0 2 Cytosol 1 0.500231643921092 0.327130198478698 0.999536712157815 hm5C_site_12656 DeepMRMD:0.327130198478698;iRNA_m5C:0.999536712157815 12657 chr13 111111235 111111235 1 + G A rs7990383 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAAAG < 41bp 1 0.687860955080532 1 0.813098073005676 experiment 0.624278089838936 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111235 nonsynonymous SNV 0.126 1 39 hm5C_associated_SNPs_10352 1 0 0 0 1 Cytosol 1 0.500231643921093 0.373803853988648 0.999536712157814 hm5C_site_12657 DeepMRMD:0.373803853988648;iRNA_m5C:0.999536712157814 Porencephaly Porencephaly 12658 chr13 111154058 111154058 1 + T A rs439831 111154069 + 111154049 111154089 41 GGGGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGG GGGGTTCCCAGGTATCACACCCCCTTCCAACATCTCTGGGG < 41bp 1 0.0650324774189507 1 0.0887761414051056 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154069 chr13:111154058 synonymous SNV . 0 10 hm5C_associated_SNPs_10353 0 0 0 0 2 Cytosol 1 0.500231643921171 1 0.999536712157658 hm5C_site_12658 DeepMRMD:1;iRNA_m5C:0.999536712157658 12659 chr13 111154058 111154058 1 + T A rs439831 111154071 + 111154051 111154091 41 GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCA GGTTCCCAGGTATCACACCCCCTTCCAACATCTCTGGGGCA < 41bp 1 0.0074268612466415 1 0.18732813000679 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154071 chr13:111154058 synonymous SNV . 0 8 hm5C_associated_SNPs_10354 0 0 0 0 2 Cytosol 1 0.500231643921104 1 0.999536712157792 hm5C_site_12659 DeepMRMD:1;iRNA_m5C:0.999536712157792 12660 chr13 111154061 111154061 1 + T C rs409858 111154069 + 111154049 111154089 41 GGGGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGG GGGGTTCCCTGGCATCACACCCCCTTCCAACATCTCTGGGG < 41bp 1 0.0771503449081071 1 0.0681957900524139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154069 chr13:111154061 synonymous SNV . 0 13 hm5C_associated_SNPs_10355 0 0 1 0 2 Cytosol 1 0.500231643919531 1 0.999536712160937 hm5C_site_12660 DeepMRMD:1;iRNA_m5C:0.999536712160937 12661 chr13 111154061 111154061 1 + T C rs409858 111154071 + 111154051 111154091 41 GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCA GGTTCCCTGGCATCACACCCCCTTCCAACATCTCTGGGGCA < 41bp 1 0.00739321886574842 1 0.343580514192581 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154071 chr13:111154061 synonymous SNV . 0 11 hm5C_associated_SNPs_10356 0 0 1 0 2 Cytosol 1 0.500231643921705 1 0.99953671215659 hm5C_site_12661 DeepMRMD:1;iRNA_m5C:0.99953671215659 12662 chr13 111155773 111155773 1 + T A rs438758 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACAGGGGCGGTGGGCGACAGAGGCCCCA < 41bp 1 0.226129177863684 1 0.613741993904114 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155773 synonymous SNV . 0 16 hm5C_associated_SNPs_10357 0 0 0 0 2 Cytosol 1 0.500231643921096 0.772516012191772 0.999536712157807 hm5C_site_12662 DeepMRMD:0.772516012191772;iRNA_m5C:0.999536712157807 12663 chr13 111155779 111155779 1 + G A rs4773199 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACTGGGGCAGTGGGCGACAGAGGCCCCA < 41bp 1 0.201387599348047 1 0.462307304143906 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155779 synonymous SNV . 0 22 hm5C_associated_SNPs_10358 1 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12663 DeepMRMD:1;iRNA_m5C:0.999536712157815 Porencephaly Porencephaly 12664 chr13 111155786 111155786 1 + G A rs558814304 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACTGGGGCGGTGGGCAACAGAGGCCCCA < 41bp 1 0.221226503469022 1 0.719749271869659 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155786 nonsynonymous SNV 0.956 5 29 hm5C_associated_SNPs_10359 1 0 0 0 2 Cytosol 1 0.500231643924621 0.560501456260682 0.999536712150759 hm5C_site_12664 DeepMRMD:0.560501456260682;iRNA_m5C:0.999536712150759 Porencephaly Porencephaly 12665 chr13 111287925 111287925 1 + C T rs34104098 111287910 + 111287890 111287930 41 GTGGTCCAGAAAGGAGAGCGCGACATCCTCTCCAACGGCCA GTGGTCCAGAAAGGAGAGCGCGACATCCTCTCCAATGGCCA < 41bp 1 0.699248008708769 1 0.382514804601669 experiment 0.601503982582462 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111287910 chr13:111287925 synonymous SNV . 0 36 hm5C_associated_SNPs_10361 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12665 DeepMRMD:1;iRNA_m5C:0.999536712157815 12666 chr13 111290880 111290880 1 + G A rs330563 111290877 + 111290857 111290897 41 CAAGCTCTTTGAAACCTGAGCCCGCGCAGACCAGAAGTAAA CAAGCTCTTTGAAACCTGAGCCCACGCAGACCAGAAGTAAA < 41bp 1 0.0588939145526033 1 0.0615028738975525 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAXD ENSG00000213995 UTR3 Human protein_coding chr13:111290877 chr13:111290880 . . 0 24 hm5C_associated_SNPs_10362 0 0 1 0 0 Cytosol 1 0.500231643998373 1 0.999536712003254 hm5C_site_12666 DeepMRMD:1;iRNA_m5C:0.999536712003254 12667 chr13 111290880 111290880 1 + G A rs330563 111290878 + 111290858 111290898 41 AAGCTCTTTGAAACCTGAGCCCGCGCAGACCAGAAGTAAAC AAGCTCTTTGAAACCTGAGCCCACGCAGACCAGAAGTAAAC < 41bp 1 0.187930165617663 1 0.157225877046585 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAXD ENSG00000213995 UTR3 Human protein_coding chr13:111290878 chr13:111290880 . . 0 23 hm5C_associated_SNPs_10363 0 0 1 0 0 Cytosol 1 0.500228255318671 1 0.999543489362657 hm5C_site_12667 DeepMRMD:1;iRNA_m5C:0.999543489362657 12668 chr13 111290880 111290880 1 + G A rs330563 111290879 + 111290859 111290899 41 AGCTCTTTGAAACCTGAGCCCGCGCAGACCAGAAGTAAACA AGCTCTTTGAAACCTGAGCCCACGCAGACCAGAAGTAAACA < 41bp 1 0.412269200362712 1 0.185937196016312 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAXD ENSG00000213995 UTR3 Human protein_coding chr13:111290879 chr13:111290880 . . 0 22 hm5C_associated_SNPs_10364 0 0 1 0 0 Cytosol 1 0.500231644023178 1 0.999536711953643 hm5C_site_12668 DeepMRMD:1;iRNA_m5C:0.999536711953643 12669 chr13 111290880 111290880 1 + G A rs330563 111290881 + 111290861 111290901 41 CTCTTTGAAACCTGAGCCCGCGCAGACCAGAAGTAAACAGG CTCTTTGAAACCTGAGCCCACGCAGACCAGAAGTAAACAGG < 41bp 1 0.5373091835678 1 0.254319131374359 experiment 0.9253816328644 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAXD ENSG00000213995 UTR3 Human protein_coding chr13:111290881 chr13:111290880 . . 0 20 hm5C_associated_SNPs_10365 0 0 1 0 0 Cytosol 1 0.500231598193795 1 0.999536803612411 hm5C_site_12669 DeepMRMD:1;iRNA_m5C:0.999536803612411 12670 chr13 111957869 111957869 1 + G A rs6692 111957878 + 111957858 111957898 41 TGTCCACATGCGCTGGGCGTCTGGGACCTTGAATGCCTGCC TGTCCACATGCACTGGGCGTCTGGGACCTTGAATGCCTGCC < 41bp 1 0.552622734160055 1 0.735217034816742 experiment 0.894754531679889 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF7 ENSG00000102606 UTR3 Human protein_coding chr13:111957878 chr13:111957869 . . 0 12 hm5C_associated_SNPs_10367 0 0 0 0 0 Nucleus 1 0.500231643921109 0.529565930366516 0.999536712157782 hm5C_site_12670 DeepMRMD:0.529565930366516;iRNA_m5C:0.999536712157782 12671 chr13 113487196 113487196 1 + G A rs138532095 113487177 + 113487157 113487197 41 GAACTGCTTTTTTATAGGAGCGCGAGGAGCTGTTTTTCCGG GAACTGCTTTTTTATAGGAGCGCGAGGAGCTGTTTTTCCAG < 41bp 1 0.690938610137034 1 0.753544926643372 experiment 0.618122779725932 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487177 chr13:113487196 nonsynonymous SNV 0.990 3 40 hm5C_associated_SNPs_10368 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.492910146713256 0.999536712157815 hm5C_site_12671 DeepMRMD:0.492910146713256;iRNA_m5C:0.999536712157815 12672 chr13 113537687 113537687 1 + G A rs12428463 113537697 + 113537677 113537717 41 GACTTCAGACGCTGAAACTGCTGCCTTTCAGGAAAGCACCA GACTTCAGACACTGAAACTGCTGCCTTTCAGGAAAGCACCA < 41bp 1 0.247765793258897 1 0.244970619678497 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP11A ENSG00000068650 UTR3 Human protein_coding chr13:113537697 chr13:113537687 . . 0 11 hm5C_associated_SNPs_10369 0 0 0 0 0 Endoplasmic reticulum 1 0.500230383349827 1 0.999539233300347 hm5C_site_12672 DeepMRMD:1;iRNA_m5C:0.999539233300347 12673 chr13 113732707 113732707 1 + C T rs145119738 113732702 + 113732682 113732722 41 CGGCGAGGCTCTGAGAACTCCAGCTCCGAGGGCGGTGCGCT CGGCGAGGCTCTGAGAACTCCAGCTTCGAGGGCGGTGCGCT < 41bp 1 0.386964935412722 1 0.39242947101593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113732702 chr13:113732707 nonsynonymous SNV 0.830 0 26 hm5C_associated_SNPs_10371 0 0 1 0 2 Cytosol 1 0.500231643963596 1 0.999536712072808 hm5C_site_12673 DeepMRMD:1;iRNA_m5C:0.999536712072808 12674 chr13 113741590 113741590 1 + G A rs9604022 113741589 + 113741569 113741609 41 CAAGCTGCTGATGCAGGGCTCGTTCAGCGTCTGGACCGACC CAAGCTGCTGATGCAGGGCTCATTCAGCGTCTGGACCGACC < 41bp 1 0.0309025996905276 1 0.0591806471347809 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113741589 chr13:113741590 synonymous SNV . 0 22 hm5C_associated_SNPs_10372 0 0 1 0 1 Cytosol 1 0.500231644012729 1 0.999536711974543 hm5C_site_12674 DeepMRMD:1;iRNA_m5C:0.999536711974543 12675 chr13 113863128 113863128 1 + G A rs542701792 113863147 + 113863127 113863167 41 CGGGGTCTTTCTGCCGGGGCCCCGTCCTCTCAGCCGGGACG CAGGGTCTTTCTGCCGGGGCCCCGTCCTCTCAGCCGGGACG < 41bp 1 0.418283952734774 1 0.0611231327056885 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUL4A;PCID2 ENSG00000139842 UTR5 Human protein_coding chr13:113863147 chr13:113863128 . . 0 2 hm5C_associated_SNPs_10373 0 0 1 0 1 unknown 1 0.500231643916643 1 0.999536712166714 hm5C_site_12675 DeepMRMD:1;iRNA_m5C:0.999536712166714 12676 chr13 113863128 113863128 1 + G A rs542701792 113863148 + 113863128 113863168 41 GGGGTCTTTCTGCCGGGGCCCCGTCCTCTCAGCCGGGACGC AGGGTCTTTCTGCCGGGGCCCCGTCCTCTCAGCCGGGACGC < 41bp 1 0.191643708454308 1 0.276394933462143 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUL4A;PCID2 ENSG00000139842 UTR5 Human protein_coding chr13:113863148 chr13:113863128 . . 0 1 hm5C_associated_SNPs_10374 0 0 1 0 1 unknown 1 0.500231561431006 1 0.999536877137987 hm5C_site_12676 DeepMRMD:1;iRNA_m5C:0.999536877137987 12677 chr13 113976753 113976753 1 + A C rs548499764 113976770 + 113976750 113976790 41 GGCACAGCAGCTGCAGGGGCCTCTGTTCCTTTCTCTGGGCT GGCCCAGCAGCTGCAGGGGCCTCTGTTCCTTTCTCTGGGCT < 41bp 1 0.393650460137982 1 0.0762401223182678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LAMP1 ENSG00000185896 UTR3 Human protein_coding chr13:113976770 chr13:113976753 . . 0 4 hm5C_associated_SNPs_10375 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12677 DeepMRMD:1;iRNA_m5C:0.999536712157815 12678 chr13 113976786 113976786 1 + G A rs559714284 113976770 + 113976750 113976790 41 GGCACAGCAGCTGCAGGGGCCTCTGTTCCTTTCTCTGGGCT GGCACAGCAGCTGCAGGGGCCTCTGTTCCTTTCTCTAGGCT < 41bp 1 0.349945375696364 1 0.0694396793842316 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LAMP1 ENSG00000185896 UTR3 Human protein_coding chr13:113976770 chr13:113976786 . . 0 37 hm5C_associated_SNPs_10376 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_12678 DeepMRMD:1;iRNA_m5C:0.999536712157815 12679 chr13 114175032 114175032 1 + G A rs2260335 114175039 + 114175019 114175059 41 CATACAGGCGGGCGCCAGTGCATCTTCTAGGTAAACGCTTT CATACAGGCGGGCACCAGTGCATCTTCTAGGTAAACGCTTT < 41bp 1 0.179017648771792 1 0.14364105463028 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114175039 chr13:114175032 nonsynonymous SNV 0.001 0 14 hm5C_associated_SNPs_10377 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_12679 DeepMRMD:1;iRNA_m5C:0.999536712157813 12680 chr13 114175038 114175038 1 + G A rs7319493 114175039 + 114175019 114175059 41 CATACAGGCGGGCGCCAGTGCATCTTCTAGGTAAACGCTTT CATACAGGCGGGCGCCAGTACATCTTCTAGGTAAACGCTTT < 41bp 1 0.24181272385786 1 0.278241991996765 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114175039 chr13:114175038 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_10378 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12680 DeepMRMD:1;iRNA_m5C:0.999536712157815 12681 chr13 114541079 114541079 1 + G A rs201561637 114541062 - 114541042 114541082 41 CAGCGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG CAGTGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG < 41bp 1 0.502441603901384 1 0.388643741607666 experiment 0.995116792197232 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541062 chr13:114541079 synonymous SNV . 0 4 hm5C_associated_SNPs_10379 0 0 1 0 2 Endoplasmic reticulum 1 0.500231647871819 1 0.999536704256362 hm5C_site_12681 DeepMRMD:1;iRNA_m5C:0.999536704256362 12682 chr13 115008318 115008318 1 + C G rs17337940 115008298 + 115008278 115008318 41 TGATTTTGCCGCCCCCTGCCCCGGGAACAGTTGGCAATGTC TGATTTTGCCGCCCCCTGCCCCGGGAACAGTTGGCAATGTG < 41bp 1 0.374496141823371 1 0.717645525932312 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CDC16 ENSG00000130177 intronic Human protein_coding chr13:115008298 chr13:115008318 . . 0 41 hm5C_associated_SNPs_10380 0 0 1 0 0 Ribosome 1 0.500231428900789 0.564708948135376 0.999537142198423 hm5C_site_12682 DeepMRMD:0.564708948135376;iRNA_m5C:0.999537142198423 12683 chr13 115008318 115008318 1 + C G rs17337940 115008299 + 115008279 115008319 41 GATTTTGCCGCCCCCTGCCCCGGGAACAGTTGGCAATGTCT GATTTTGCCGCCCCCTGCCCCGGGAACAGTTGGCAATGTGT < 41bp 1 0.698352463856098 1 0.888521730899811 experiment 0.603295072287804 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CDC16 ENSG00000130177 intronic Human protein_coding chr13:115008299 chr13:115008318 . . 0 40 hm5C_associated_SNPs_10381 0 0 1 0 0 Ribosome 1 0.500231643921521 0.222956538200378 0.999536712156958 hm5C_site_12683 DeepMRMD:0.222956538200378;iRNA_m5C:0.999536712156958 12684 chr14 20822308 20822308 1 + A G rs3093921 20822301 + 20822281 20822321 41 CTCCCTTGAAGCCAGAGTCACAGCTAGATCTTCGGGTACAG CTCCCTTGAAGCCAGAGTCACAGCTAGGTCTTCGGGTACAG < 41bp 1 0.476678638209382 1 0.167931646108627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARP2 ENSG00000129484 CDS Human protein_coding chr14:20822301 chr14:20822308 nonsynonymous SNV 0.965 2 28 hm5C_associated_SNPs_10382 0 0 1 0 1 Cytosol 1 0.500231642957623 1 0.999536714084754 hm5C_site_12684 DeepMRMD:1;iRNA_m5C:0.999536714084754 12685 chr14 20937588 20937588 1 + G A rs17881206 20937582 + 20937562 20937602 41 GCCAACTGTGCGAACCAGACCCGGCAGCCTTGCTCAGTTCA GCCAACTGTGCGAACCAGACCCGGCAACCTTGCTCAGTTCA < 41bp 1 0.273742835884364 1 0.397435486316681 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 UTR5 Human protein_coding chr14:20937582 chr14:20937588 . . 0 27 hm5C_associated_SNPs_10383 1 0 1 0 0 Ribosome 1 0.50023164392107 1 0.99953671215786 hm5C_site_12685 DeepMRMD:1;iRNA_m5C:0.99953671215786 Purine-nucleoside phosphorylase deficiency Purine-nucleoside phosphorylase deficiency 12686 chr14 20937593 20937593 1 + G A rs115464597 20937582 + 20937562 20937602 41 GCCAACTGTGCGAACCAGACCCGGCAGCCTTGCTCAGTTCA GCCAACTGTGCGAACCAGACCCGGCAGCCTTACTCAGTTCA < 41bp 1 0.270827773930248 1 0.456937998533249 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 UTR5 Human protein_coding chr14:20937582 chr14:20937593 . . 0 32 hm5C_associated_SNPs_10384 0 0 1 0 0 Ribosome 1 0.500231643920037 1 0.999536712159926 hm5C_site_12686 DeepMRMD:1;iRNA_m5C:0.999536712159926 12687 chr14 20937601 20937601 1 + C G rs113248050 20937582 + 20937562 20937602 41 GCCAACTGTGCGAACCAGACCCGGCAGCCTTGCTCAGTTCA GCCAACTGTGCGAACCAGACCCGGCAGCCTTGCTCAGTTGA < 41bp 1 0.273384197998195 1 0.408387005329132 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 UTR5 Human protein_coding chr14:20937582 chr14:20937601 . . 0 40 hm5C_associated_SNPs_10385 1 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12687 DeepMRMD:1;iRNA_m5C:0.999536712157815 Purine-nucleoside phosphorylase deficiency Purine-nucleoside phosphorylase deficiency 12688 chr14 20945014 20945014 1 + C T rs7785 20945033 + 20945013 20945053 41 TCTTACACAAGAGCTGGAGCCCGTGCCCTACCACACATCTG TTTTACACAAGAGCTGGAGCCCGTGCCCTACCACACATCTG < 41bp 1 0.348552092194092 1 0.60763818025589 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000258908 ncRNA_intronic Human lincRNA chr14:20945033 chr14:20945014 . . 0 2 hm5C_associated_SNPs_10386 1 0 1 0 0 Ribosome 1 0.500228792789116 0.78472363948822 0.999542414421768 hm5C_site_12688 DeepMRMD:0.78472363948822;iRNA_m5C:0.999542414421768 Purine-nucleoside phosphorylase deficiency Purine-nucleoside phosphorylase deficiency 12689 chr14 21078296 21078296 1 + C G rs115267088 21078301 + 21078281 21078321 41 TTAGCCAGTAGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGG TTAGCCAGTAGGTAGGGTGGCCGAGCGGTCTAAGGCGCTGG < 41bp 1 0.423528316161747 1 0.17060986161232 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078301 chr14:21078296 . . 0 16 hm5C_associated_SNPs_10387 0 0 1 0 0 unknown 1 0.500231643921095 1 0.99953671215781 hm5C_site_12689 DeepMRMD:1;iRNA_m5C:0.99953671215781 12690 chr14 21078296 21078296 1 + C G rs115267088 21078302 + 21078282 21078322 41 TAGCCAGTAGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGA TAGCCAGTAGGTAGGGTGGCCGAGCGGTCTAAGGCGCTGGA < 41bp 1 0.505069612260252 1 0.666012048721313 experiment 0.989860775479497 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078302 chr14:21078296 . . 0 15 hm5C_associated_SNPs_10388 0 0 1 0 0 unknown 1 0.500232622601239 0.667975902557374 0.999534754797522 hm5C_site_12690 DeepMRMD:0.667975902557374;iRNA_m5C:0.999534754797522 12691 chr14 21078296 21078296 1 + C G rs115267088 21078306 + 21078286 21078326 41 CAGTAGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAA CAGTAGGTAGGGTGGCCGAGCGGTCTAAGGCGCTGGATTAA < 41bp 1 0.351351470907418 1 0.747130572795868 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078306 chr14:21078296 . . 0 11 hm5C_associated_SNPs_10389 0 0 1 0 0 unknown 1 0.50023285094824 0.505738854408264 0.99953429810352 hm5C_site_12691 DeepMRMD:0.505738854408264;iRNA_m5C:0.99953429810352 12692 chr14 21078296 21078296 1 + C G rs115267088 21078310 + 21078290 21078330 41 AGGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCT AGGTAGGGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCT < 41bp 1 0.567669374200982 1 0.497092932462692 experiment 0.864661251598037 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078310 chr14:21078296 . . 0 7 hm5C_associated_SNPs_10390 0 0 1 0 0 unknown 1 0.500231643925114 1 0.999536712149772 hm5C_site_12692 DeepMRMD:1;iRNA_m5C:0.999536712149772 12693 chr14 21078338 21078338 1 + C G rs144037355 21078332 + 21078312 21078352 41 AAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGGCGTGGG AAGGCGCTGGATTAAGGCTCCAGTCTGTTCGGGGGCGTGGG < 41bp 1 0.215057810479713 1 0.338429868221283 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078332 chr14:21078338 . . 0 27 hm5C_associated_SNPs_10391 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12693 DeepMRMD:1;iRNA_m5C:0.999536712157815 12694 chr14 21078338 21078338 1 + C G rs144037355 21078355 + 21078335 21078375 41 TCTCTTCGGGGGCGTGGGTTCGAATCCCACCGCTGCCAGGT TCTGTTCGGGGGCGTGGGTTCGAATCCCACCGCTGCCAGGT < 41bp 1 0.551905324498866 1 0.355390131473541 experiment 0.896189351002268 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078355 chr14:21078338 . . 0 4 hm5C_associated_SNPs_10392 0 0 1 0 0 unknown 1 0.500231643883013 1 0.999536712233974 hm5C_site_12694 DeepMRMD:1;iRNA_m5C:0.999536712233974 12695 chr14 21078346 21078346 1 + G A rs147322006 21078332 + 21078312 21078352 41 AAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGGCGTGGG AAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGACGTGGG < 41bp 1 0.180129364580148 1 0.297093987464905 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078332 chr14:21078346 . . 0 35 hm5C_associated_SNPs_10393 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12695 DeepMRMD:1;iRNA_m5C:0.999536712157815 12696 chr14 21078346 21078346 1 + G A rs147322006 21078338 + 21078318 21078358 41 CTGGATTAAGGCTCCAGTCTCTTCGGGGGCGTGGGTTCGAA CTGGATTAAGGCTCCAGTCTCTTCGGGGACGTGGGTTCGAA < 41bp 1 0.51850166636908 1 0.252295851707458 experiment 0.96299666726184 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078338 chr14:21078346 . . 0 29 hm5C_associated_SNPs_10394 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12696 DeepMRMD:1;iRNA_m5C:0.999536712157815 12697 chr14 21078346 21078346 1 + G A rs147322006 21078355 + 21078335 21078375 41 TCTCTTCGGGGGCGTGGGTTCGAATCCCACCGCTGCCAGGT TCTCTTCGGGGACGTGGGTTCGAATCCCACCGCTGCCAGGT < 41bp 1 0.490639009664933 1 0.273589313030243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078355 chr14:21078346 . . 0 12 hm5C_associated_SNPs_10395 0 0 1 0 0 unknown 1 0.500231640172248 1 0.999536719655503 hm5C_site_12697 DeepMRMD:1;iRNA_m5C:0.999536719655503 12698 chr14 21078346 21078346 1 + G A rs147322006 21078361 + 21078341 21078381 41 CGGGGGCGTGGGTTCGAATCCCACCGCTGCCAGGTGCTTCC CGGGGACGTGGGTTCGAATCCCACCGCTGCCAGGTGCTTCC < 41bp 1 0.280118426201855 1 0.159199804067612 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078361 chr14:21078346 . . 0 6 hm5C_associated_SNPs_10396 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12698 DeepMRMD:1;iRNA_m5C:0.999536712157815 12699 chr14 21078346 21078346 1 + G A rs147322006 21078364 + 21078344 21078384 41 GGGCGTGGGTTCGAATCCCACCGCTGCCAGGTGCTTCCCTT GGACGTGGGTTCGAATCCCACCGCTGCCAGGTGCTTCCCTT < 41bp 1 0.409677773228046 1 0.190875262022018 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078364 chr14:21078346 . . 0 3 hm5C_associated_SNPs_10397 0 0 1 0 0 unknown 1 0.500231641135218 1 0.999536717729565 hm5C_site_12699 DeepMRMD:1;iRNA_m5C:0.999536717729565 12700 chr14 21078346 21078346 1 + G A rs147322006 21078365 + 21078345 21078385 41 GGCGTGGGTTCGAATCCCACCGCTGCCAGGTGCTTCCCTTT GACGTGGGTTCGAATCCCACCGCTGCCAGGTGCTTCCCTTT < 41bp 1 0.362197902595492 1 0.35090035200119 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC254028;OR6S1 ENSG00000173464;ENSG00000259060 upstream Human other chr14:21078365 chr14:21078346 . . 0 2 hm5C_associated_SNPs_10398 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12700 DeepMRMD:1;iRNA_m5C:0.999536712157815 12701 chr14 21101209 21101209 1 + G A rs561874672 21101190 + 21101170 21101210 41 GTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGT GTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGAT < 41bp 1 0.618038042243848 1 0.764019727706909 experiment 0.763923915512305 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC254028;OR6S1 ENSG00000239327;ENSG00000181803 intergenic Human other chr14:21101190 chr14:21101209 . . 0 40 hm5C_associated_SNPs_10399 0 0 1 0 0 unknown 1 0.500231643920875 0.471960544586182 0.999536712158251 hm5C_site_12701 DeepMRMD:0.471960544586182;iRNA_m5C:0.999536712158251 12702 chr14 21101209 21101209 1 + G A rs561874672 21101192 + 21101172 21101212 41 TGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCC TGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGATCC < 41bp 1 0.286054632084437 1 0.304837375879288 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LOC254028;OR6S1 ENSG00000239327;ENSG00000181803 intergenic Human other chr14:21101192 chr14:21101209 . . 0 38 hm5C_associated_SNPs_10400 0 0 1 0 0 unknown 1 0.50023164452186 1 0.99953671095628 hm5C_site_12702 DeepMRMD:1;iRNA_m5C:0.99953671095628 12703 chr14 21101209 21101209 1 + G A rs561874672 21101194 + 21101174 21101214 41 GTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCG GTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGATCCCG < 41bp 1 0.187306461247965 1 0.09068363904953 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC254028;OR6S1 ENSG00000239327;ENSG00000181803 intergenic Human other chr14:21101194 chr14:21101209 . . 0 36 hm5C_associated_SNPs_10401 0 0 1 0 0 unknown 1 0.500231645255786 1 0.999536709488428 hm5C_site_12703 DeepMRMD:1;iRNA_m5C:0.999536709488428 12704 chr14 21101228 21101228 1 + G A rs113767679 21101236 + 21101216 21101256 41 GTTCAAATCCCGGACGAGCCCCTTTACTTTCCTTTCCGTTT GTTCAAATCCCGAACGAGCCCCTTTACTTTCCTTTCCGTTT < 41bp 1 0.0222384139035635 1 0.0691747069358826 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC254028;OR6S1 ENSG00000239327;ENSG00000181803 intergenic Human other chr14:21101236 chr14:21101228 . . 0 13 hm5C_associated_SNPs_10406 0 0 1 0 0 unknown 1 0.500231643966917 1 0.999536712066165 hm5C_site_12704 DeepMRMD:1;iRNA_m5C:0.999536712066165 12705 chr14 21101233 21101233 1 + G A rs571096971 21101236 + 21101216 21101256 41 GTTCAAATCCCGGACGAGCCCCTTTACTTTCCTTTCCGTTT GTTCAAATCCCGGACGAACCCCTTTACTTTCCTTTCCGTTT < 41bp 1 0.0420429727344531 1 0.0956867933273315 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LOC254028;OR6S1 ENSG00000239327;ENSG00000181803 intergenic Human other chr14:21101236 chr14:21101233 . . 0 18 hm5C_associated_SNPs_10407 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12705 DeepMRMD:1;iRNA_m5C:0.999536712157815 12706 chr14 21151461 21151461 1 + G A rs138175896 21151442 + 21151422 21151462 41 TTCCGTGCTTCCTTCGATAGCTCAGCTGGTAGAGCGGAGGA TTCCGTGCTTCCTTCGATAGCTCAGCTGGTAGAGCGGAGAA < 41bp 1 0.565963907059417 1 0.103697597980499 experiment 0.868072185881167 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151442 chr14:21151461 . . 0 40 hm5C_associated_SNPs_10408 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12706 DeepMRMD:1;iRNA_m5C:0.999536712157815 12707 chr14 21151461 21151461 1 + G A rs138175896 21151444 + 21151424 21151464 41 CCGTGCTTCCTTCGATAGCTCAGCTGGTAGAGCGGAGGACT CCGTGCTTCCTTCGATAGCTCAGCTGGTAGAGCGGAGAACT < 41bp 1 0.359317336266635 1 0.490171253681183 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151444 chr14:21151461 . . 0 38 hm5C_associated_SNPs_10409 0 0 1 0 0 unknown 1 0.50023164395494 1 0.999536712090119 hm5C_site_12707 DeepMRMD:1;iRNA_m5C:0.999536712090119 12708 chr14 21151461 21151461 1 + G A rs138175896 21151447 + 21151427 21151467 41 TGCTTCCTTCGATAGCTCAGCTGGTAGAGCGGAGGACTGTA TGCTTCCTTCGATAGCTCAGCTGGTAGAGCGGAGAACTGTA < 41bp 1 0.316399843033991 1 0.38305452466011 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151447 chr14:21151461 . . 0 35 hm5C_associated_SNPs_10410 0 0 1 0 0 unknown 1 0.500231414910942 1 0.999537170178116 hm5C_site_12708 DeepMRMD:1;iRNA_m5C:0.999537170178116 12709 chr14 21151461 21151461 1 + G A rs138175896 21151456 + 21151436 21151476 41 CGATAGCTCAGCTGGTAGAGCGGAGGACTGTAGTACTTAAT CGATAGCTCAGCTGGTAGAGCGGAGAACTGTAGTACTTAAT < 41bp 1 0.413390388730153 1 0.741814255714417 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151456 chr14:21151461 . . 0 26 hm5C_associated_SNPs_10411 0 0 1 0 0 unknown 1 0.500231643921093 0.516371488571166 0.999536712157814 hm5C_site_12709 DeepMRMD:0.516371488571166;iRNA_m5C:0.999536712157814 12710 chr14 21151461 21151461 1 + G A rs138175896 21151463 + 21151443 21151483 41 TCAGCTGGTAGAGCGGAGGACTGTAGTACTTAATGTGTGGT TCAGCTGGTAGAGCGGAGAACTGTAGTACTTAATGTGTGGT < 41bp 1 0.476914011979236 1 0.191836714744568 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151463 chr14:21151461 . . 0 19 hm5C_associated_SNPs_10412 0 0 1 0 0 unknown 1 0.500231643717609 1 0.999536712564781 hm5C_site_12710 DeepMRMD:1;iRNA_m5C:0.999536712564781 12711 chr14 21151461 21151461 1 + G A rs138175896 21151471 + 21151451 21151491 41 TAGAGCGGAGGACTGTAGTACTTAATGTGTGGTCATCCTTA TAGAGCGGAGAACTGTAGTACTTAATGTGTGGTCATCCTTA < 41bp 1 0.280338889329828 1 0.181295692920685 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151471 chr14:21151461 . . 0 11 hm5C_associated_SNPs_10413 0 0 1 0 0 unknown 1 0.500231637980569 1 0.999536724038863 hm5C_site_12711 DeepMRMD:1;iRNA_m5C:0.999536724038863 12712 chr14 21151483 21151483 1 + T G rs61976879 21151463 + 21151443 21151483 41 TCAGCTGGTAGAGCGGAGGACTGTAGTACTTAATGTGTGGT TCAGCTGGTAGAGCGGAGGACTGTAGTACTTAATGTGTGGG < 41bp 1 0.447009290718827 1 0.164619892835617 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151463 chr14:21151483 . . 0 41 hm5C_associated_SNPs_10414 0 0 1 0 0 unknown 1 0.500231643922452 1 0.999536712155096 hm5C_site_12712 DeepMRMD:1;iRNA_m5C:0.999536712155096 12713 chr14 21151483 21151483 1 + T G rs61976879 21151471 + 21151451 21151491 41 TAGAGCGGAGGACTGTAGTACTTAATGTGTGGTCATCCTTA TAGAGCGGAGGACTGTAGTACTTAATGTGTGGGCATCCTTA < 41bp 1 0.281522022547504 1 0.298241913318634 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151471 chr14:21151483 . . 0 33 hm5C_associated_SNPs_10415 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12713 DeepMRMD:1;iRNA_m5C:0.999536712157815 12714 chr14 21151483 21151483 1 + T G rs61976879 21151484 + 21151464 21151504 41 TGTAGTACTTAATGTGTGGTCATCCTTAGGTCGCTGGTTCG TGTAGTACTTAATGTGTGGGCATCCTTAGGTCGCTGGTTCG < 41bp 1 0.145869015823558 1 0.130103975534439 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151484 chr14:21151483 . . 0 20 hm5C_associated_SNPs_10416 0 0 1 0 0 unknown 1 0.500231643921359 1 0.999536712157282 hm5C_site_12714 DeepMRMD:1;iRNA_m5C:0.999536712157282 12715 chr14 21151483 21151483 1 + T G rs61976879 21151487 + 21151467 21151507 41 AGTACTTAATGTGTGGTCATCCTTAGGTCGCTGGTTCGATT AGTACTTAATGTGTGGGCATCCTTAGGTCGCTGGTTCGATT < 41bp 1 0.0914733245726297 1 0.0699045956134796 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151487 chr14:21151483 . . 0 17 hm5C_associated_SNPs_10417 0 0 1 0 0 unknown 1 0.500231643922549 1 0.999536712154901 hm5C_site_12715 DeepMRMD:1;iRNA_m5C:0.999536712154901 12716 chr14 21151483 21151483 1 + T G rs61976879 21151488 + 21151468 21151508 41 GTACTTAATGTGTGGTCATCCTTAGGTCGCTGGTTCGATTC GTACTTAATGTGTGGGCATCCTTAGGTCGCTGGTTCGATTC < 41bp 1 0.545178353401718 1 0.364154875278473 experiment 0.909643293196564 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151488 chr14:21151483 . . 0 16 hm5C_associated_SNPs_10418 0 0 1 0 0 unknown 1 0.500231643920238 1 0.999536712159525 hm5C_site_12716 DeepMRMD:1;iRNA_m5C:0.999536712159525 12717 chr14 21151483 21151483 1 + T G rs61976879 21151497 + 21151477 21151517 41 GTGTGGTCATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAA GTGTGGGCATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAA < 41bp 1 0.569585487832709 1 0.0972063541412354 experiment 0.860829024334582 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151497 chr14:21151483 . . 0 7 hm5C_associated_SNPs_10420 0 0 1 0 0 unknown 1 0.500231643920916 1 0.999536712158167 hm5C_site_12717 DeepMRMD:1;iRNA_m5C:0.999536712158167 12718 chr14 21151483 21151483 1 + T G rs61976879 21151503 + 21151483 21151523 41 TCATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAAGGAGAC GCATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAAGGAGAC < 41bp 1 0.119273552047615 1 0.252111852169037 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151503 chr14:21151483 . . 0 1 hm5C_associated_SNPs_10421 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_12718 DeepMRMD:1;iRNA_m5C:0.999536712157815 12719 chr14 21151484 21151484 1 + C T rs115156442 21151471 + 21151451 21151491 41 TAGAGCGGAGGACTGTAGTACTTAATGTGTGGTCATCCTTA TAGAGCGGAGGACTGTAGTACTTAATGTGTGGTTATCCTTA < 41bp 1 0.282960328616671 1 0.250145524740219 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151471 chr14:21151484 . . 0 34 hm5C_associated_SNPs_10422 0 0 1 0 0 unknown 1 0.500231643919903 1 0.999536712160193 hm5C_site_12719 DeepMRMD:1;iRNA_m5C:0.999536712160193 12720 chr14 21151484 21151484 1 + C T rs115156442 21151487 + 21151467 21151507 41 AGTACTTAATGTGTGGTCATCCTTAGGTCGCTGGTTCGATT AGTACTTAATGTGTGGTTATCCTTAGGTCGCTGGTTCGATT < 41bp 1 0.158072186152812 1 0.0750752091407776 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151487 chr14:21151484 . . 0 18 hm5C_associated_SNPs_10423 0 0 1 0 0 unknown 1 0.500231644245087 1 0.999536711509827 hm5C_site_12720 DeepMRMD:1;iRNA_m5C:0.999536711509827 12721 chr14 21151484 21151484 1 + C T rs115156442 21151488 + 21151468 21151508 41 GTACTTAATGTGTGGTCATCCTTAGGTCGCTGGTTCGATTC GTACTTAATGTGTGGTTATCCTTAGGTCGCTGGTTCGATTC < 41bp 1 0.573459448397943 1 0.346902012825012 experiment 0.853081103204114 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151488 chr14:21151484 . . 0 17 hm5C_associated_SNPs_10424 0 0 1 0 0 unknown 1 0.500231643921109 1 0.999536712157781 hm5C_site_12721 DeepMRMD:1;iRNA_m5C:0.999536712157781 12722 chr14 21151484 21151484 1 + C T rs115156442 21151495 + 21151475 21151515 41 ATGTGTGGTCATCCTTAGGTCGCTGGTTCGATTCCGGCTCG ATGTGTGGTTATCCTTAGGTCGCTGGTTCGATTCCGGCTCG < 41bp 1 0.664299624514088 1 0.445860892534256 experiment 0.671400750971825 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151495 chr14:21151484 . . 0 10 hm5C_associated_SNPs_10425 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12722 DeepMRMD:1;iRNA_m5C:0.999536712157815 12723 chr14 21151484 21151484 1 + C T rs115156442 21151497 + 21151477 21151517 41 GTGTGGTCATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAA GTGTGGTTATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAA < 41bp 1 0.538659856016871 1 0.12548890709877 experiment 0.922680287966257 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151497 chr14:21151484 . . 0 8 hm5C_associated_SNPs_10426 0 0 1 0 0 unknown 1 0.500231643921108 1 0.999536712157785 hm5C_site_12723 DeepMRMD:1;iRNA_m5C:0.999536712157785 12724 chr14 21151484 21151484 1 + C T rs115156442 21151503 + 21151483 21151523 41 TCATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAAGGAGAC TTATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAAGGAGAC < 41bp 1 0.100431608229653 1 0.284753739833832 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151503 chr14:21151484 . . 0 2 hm5C_associated_SNPs_10427 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12724 DeepMRMD:1;iRNA_m5C:0.999536712157815 12725 chr14 21151496 21151496 1 + G A rs547405309 21151484 + 21151464 21151504 41 TGTAGTACTTAATGTGTGGTCATCCTTAGGTCGCTGGTTCG TGTAGTACTTAATGTGTGGTCATCCTTAGGTCACTGGTTCG < 41bp 1 0.185309064368557 1 0.078269898891449 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151484 chr14:21151496 . . 0 33 hm5C_associated_SNPs_10428 0 0 1 0 0 unknown 1 0.500228610521105 1 0.99954277895779 hm5C_site_12725 DeepMRMD:1;iRNA_m5C:0.99954277895779 12726 chr14 21151496 21151496 1 + G A rs547405309 21151487 + 21151467 21151507 41 AGTACTTAATGTGTGGTCATCCTTAGGTCGCTGGTTCGATT AGTACTTAATGTGTGGTCATCCTTAGGTCACTGGTTCGATT < 41bp 1 0.108886760579247 1 0.10602542757988 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151487 chr14:21151496 . . 0 30 hm5C_associated_SNPs_10429 0 0 1 0 0 unknown 1 0.500231643921164 1 0.999536712157672 hm5C_site_12726 DeepMRMD:1;iRNA_m5C:0.999536712157672 12727 chr14 21151496 21151496 1 + G A rs547405309 21151488 + 21151468 21151508 41 GTACTTAATGTGTGGTCATCCTTAGGTCGCTGGTTCGATTC GTACTTAATGTGTGGTCATCCTTAGGTCACTGGTTCGATTC < 41bp 1 0.493364581819488 1 0.261006146669388 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151488 chr14:21151496 . . 0 29 hm5C_associated_SNPs_10430 0 0 1 0 0 unknown 1 0.500233025609493 1 0.999533948781013 hm5C_site_12727 DeepMRMD:1;iRNA_m5C:0.999533948781013 12728 chr14 21151496 21151496 1 + G A rs547405309 21151495 + 21151475 21151515 41 ATGTGTGGTCATCCTTAGGTCGCTGGTTCGATTCCGGCTCG ATGTGTGGTCATCCTTAGGTCACTGGTTCGATTCCGGCTCG < 41bp 1 0.593935985388836 1 0.222897827625275 experiment 0.812128029222327 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151495 chr14:21151496 . . 0 22 hm5C_associated_SNPs_10431 0 0 1 0 0 unknown 1 0.500231643920285 1 0.99953671215943 hm5C_site_12728 DeepMRMD:1;iRNA_m5C:0.99953671215943 12729 chr14 21151496 21151496 1 + G A rs547405309 21151497 + 21151477 21151517 41 GTGTGGTCATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAA GTGTGGTCATCCTTAGGTCACTGGTTCGATTCCGGCTCGAA < 41bp 1 0.544446144100656 1 0.0601140558719635 experiment 0.911107711798688 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151497 chr14:21151496 . . 0 20 hm5C_associated_SNPs_10432 0 0 1 0 0 unknown 1 0.50023164431656 1 0.999536711366881 hm5C_site_12729 DeepMRMD:1;iRNA_m5C:0.999536711366881 12730 chr14 21151496 21151496 1 + G A rs547405309 21151503 + 21151483 21151523 41 TCATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAAGGAGAC TCATCCTTAGGTCACTGGTTCGATTCCGGCTCGAAGGAGAC < 41bp 1 0.0809303956511068 1 0.117568761110306 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151503 chr14:21151496 . . 0 14 hm5C_associated_SNPs_10433 0 0 1 0 0 unknown 1 0.500231643939579 1 0.999536712120842 hm5C_site_12730 DeepMRMD:1;iRNA_m5C:0.999536712120842 12731 chr14 21151496 21151496 1 + G A rs547405309 21151508 + 21151488 21151528 41 CTTAGGTCGCTGGTTCGATTCCGGCTCGAAGGAGACGCTGC CTTAGGTCACTGGTTCGATTCCGGCTCGAAGGAGACGCTGC < 41bp 1 0.380757817889976 1 0.741431832313538 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151508 chr14:21151496 . . 0 9 hm5C_associated_SNPs_10434 0 0 1 0 0 unknown 1 0.500231643904461 0.517136335372924 0.999536712191078 hm5C_site_12731 DeepMRMD:0.517136335372924;iRNA_m5C:0.999536712191078 12732 chr14 21151496 21151496 1 + G A rs547405309 21151509 + 21151489 21151529 41 TTAGGTCGCTGGTTCGATTCCGGCTCGAAGGAGACGCTGCT TTAGGTCACTGGTTCGATTCCGGCTCGAAGGAGACGCTGCT < 41bp 1 0.450336484812367 1 0.806030869483948 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151509 chr14:21151496 . . 0 8 hm5C_associated_SNPs_10435 0 0 1 0 0 unknown 1 0.500231643921079 0.387938261032104 0.999536712157842 hm5C_site_12732 DeepMRMD:0.387938261032104;iRNA_m5C:0.999536712157842 12733 chr14 21151496 21151496 1 + G A rs547405309 21151514 + 21151494 21151534 41 TCGCTGGTTCGATTCCGGCTCGAAGGAGACGCTGCTGTTTT TCACTGGTTCGATTCCGGCTCGAAGGAGACGCTGCTGTTTT < 41bp 1 0.441460270619975 1 0.811777830123901 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151514 chr14:21151496 . . 0 3 hm5C_associated_SNPs_10437 0 0 1 0 0 unknown 1 0.500234906613898 0.376444339752198 0.999530186772204 hm5C_site_12733 DeepMRMD:0.376444339752198;iRNA_m5C:0.999530186772204 12734 chr14 21151500 21151500 1 + G T rs565990470 21151484 + 21151464 21151504 41 TGTAGTACTTAATGTGTGGTCATCCTTAGGTCGCTGGTTCG TGTAGTACTTAATGTGTGGTCATCCTTAGGTCGCTGTTTCG < 41bp 1 0.154037631081489 1 0.0733512043952942 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151484 chr14:21151500 . . 0 37 hm5C_associated_SNPs_10438 0 0 1 0 0 unknown 1 0.500231647898689 1 0.999536704202623 hm5C_site_12734 DeepMRMD:1;iRNA_m5C:0.999536704202623 12735 chr14 21151500 21151500 1 + G T rs565990470 21151487 + 21151467 21151507 41 AGTACTTAATGTGTGGTCATCCTTAGGTCGCTGGTTCGATT AGTACTTAATGTGTGGTCATCCTTAGGTCGCTGTTTCGATT < 41bp 1 0.109866257261969 1 0.0456793606281281 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151487 chr14:21151500 . . 0 34 hm5C_associated_SNPs_10439 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12735 DeepMRMD:1;iRNA_m5C:0.999536712157815 12736 chr14 21151500 21151500 1 + G T rs565990470 21151488 + 21151468 21151508 41 GTACTTAATGTGTGGTCATCCTTAGGTCGCTGGTTCGATTC GTACTTAATGTGTGGTCATCCTTAGGTCGCTGTTTCGATTC < 41bp 1 0.528172727802631 1 0.126646757125854 experiment 0.943654544394738 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151488 chr14:21151500 . . 0 33 hm5C_associated_SNPs_10440 0 0 1 0 0 unknown 1 0.500231366856602 1 0.999537266286797 hm5C_site_12736 DeepMRMD:1;iRNA_m5C:0.999537266286797 12737 chr14 21151500 21151500 1 + G T rs565990470 21151495 + 21151475 21151515 41 ATGTGTGGTCATCCTTAGGTCGCTGGTTCGATTCCGGCTCG ATGTGTGGTCATCCTTAGGTCGCTGTTTCGATTCCGGCTCG < 41bp 1 0.610874598099743 1 0.222041249275208 experiment 0.778250803800514 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151495 chr14:21151500 . . 0 26 hm5C_associated_SNPs_10441 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12737 DeepMRMD:1;iRNA_m5C:0.999536712157815 12738 chr14 21151500 21151500 1 + G T rs565990470 21151497 + 21151477 21151517 41 GTGTGGTCATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAA GTGTGGTCATCCTTAGGTCGCTGTTTCGATTCCGGCTCGAA < 41bp 1 0.165978312973809 1 0.0232470631599426 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151497 chr14:21151500 . . 0 24 hm5C_associated_SNPs_10442 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_12738 DeepMRMD:1;iRNA_m5C:0.999536712157815 12739 chr14 21151500 21151500 1 + G T rs565990470 21151503 + 21151483 21151523 41 TCATCCTTAGGTCGCTGGTTCGATTCCGGCTCGAAGGAGAC TCATCCTTAGGTCGCTGTTTCGATTCCGGCTCGAAGGAGAC < 41bp 1 0.146540409867384 1 0.514171600341797 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151503 chr14:21151500 . . 0 18 hm5C_associated_SNPs_10443 0 0 1 0 0 unknown 1 0.500231643921097 0.971656799316406 0.999536712157806 hm5C_site_12739 DeepMRMD:0.971656799316406;iRNA_m5C:0.999536712157806 12740 chr14 21151500 21151500 1 + G T rs565990470 21151508 + 21151488 21151528 41 CTTAGGTCGCTGGTTCGATTCCGGCTCGAAGGAGACGCTGC CTTAGGTCGCTGTTTCGATTCCGGCTCGAAGGAGACGCTGC < 41bp 1 0.392159739765037 1 0.711688935756683 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151508 chr14:21151500 . . 0 13 hm5C_associated_SNPs_10444 0 0 1 0 0 unknown 1 0.50023333786304 0.576622128486634 0.999533324273919 hm5C_site_12740 DeepMRMD:0.576622128486634;iRNA_m5C:0.999533324273919 12741 chr14 21151500 21151500 1 + G T rs565990470 21151509 + 21151489 21151529 41 TTAGGTCGCTGGTTCGATTCCGGCTCGAAGGAGACGCTGCT TTAGGTCGCTGTTTCGATTCCGGCTCGAAGGAGACGCTGCT < 41bp 1 0.402663110810625 1 0.800949573516846 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151509 chr14:21151500 . . 0 12 hm5C_associated_SNPs_10445 0 0 1 0 0 unknown 1 0.500231643921092 0.398100852966308 0.999536712157815 hm5C_site_12741 DeepMRMD:0.398100852966308;iRNA_m5C:0.999536712157815 12742 chr14 21151500 21151500 1 + G T rs565990470 21151514 + 21151494 21151534 41 TCGCTGGTTCGATTCCGGCTCGAAGGAGACGCTGCTGTTTT TCGCTGTTTCGATTCCGGCTCGAAGGAGACGCTGCTGTTTT < 41bp 1 0.387933521976031 1 0.817476749420166 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818 upstream Human other chr14:21151514 chr14:21151500 . . 0 7 hm5C_associated_SNPs_10447 0 0 1 0 0 unknown 1 0.500234291302763 0.365046501159668 0.999531417394475 hm5C_site_12742 DeepMRMD:0.365046501159668;iRNA_m5C:0.999531417394475 12743 chr14 21152219 21152219 1 + G A rs149815387 21152229 + 21152209 21152249 41 GGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCTCG GGTGCGAGAGATCCCGGGTTCAAATCCCGGACGAGCCCTCG < 41bp 1 0.398494514998023 1 0.256541967391968 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818;ENSG00000259171 upstream Human other chr14:21152229 chr14:21152219 . . 0 11 hm5C_associated_SNPs_10449 0 0 1 0 0 unknown 1 0.500231643921532 1 0.999536712156937 hm5C_site_12743 DeepMRMD:1;iRNA_m5C:0.999536712156937 12744 chr14 21152219 21152219 1 + G A rs149815387 21152234 + 21152214 21152254 41 GAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCTCGTGGCT GAGAGATCCCGGGTTCAAATCCCGGACGAGCCCTCGTGGCT < 41bp 1 0.608252189731889 1 0.877865076065063 experiment 0.783495620536222 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818;ENSG00000259171 upstream Human other chr14:21152234 chr14:21152219 . . 0 6 hm5C_associated_SNPs_10450 0 0 1 0 0 unknown 1 0.500231740573933 0.244269847869874 0.999536518852134 hm5C_site_12744 DeepMRMD:0.244269847869874;iRNA_m5C:0.999536518852134 12745 chr14 21152219 21152219 1 + G A rs149815387 21152236 + 21152216 21152256 41 GAGGTCCCGGGTTCAAATCCCGGACGAGCCCTCGTGGCTAC GAGATCCCGGGTTCAAATCCCGGACGAGCCCTCGTGGCTAC < 41bp 1 0.61169458560968 1 0.700473606586456 experiment 0.77661082878064 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818;ENSG00000259171 upstream Human other chr14:21152236 chr14:21152219 . . 0 4 hm5C_associated_SNPs_10452 0 0 1 0 0 unknown 1 0.500232754437932 0.599052786827088 0.999534491124135 hm5C_site_12745 DeepMRMD:0.599052786827088;iRNA_m5C:0.999534491124135 12746 chr14 21152235 21152235 1 + C G rs146849858 21152229 + 21152209 21152249 41 GGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCTCG GGTGCGAGAGGTCCCGGGTTCAAATCGCGGACGAGCCCTCG < 41bp 1 0.455736931756805 1 0.602563858032227 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818;ENSG00000259171 upstream Human other chr14:21152229 chr14:21152235 . . 0 27 hm5C_associated_SNPs_10455 0 0 1 0 0 unknown 1 0.500231643921093 0.794872283935546 0.999536712157815 hm5C_site_12746 DeepMRMD:0.794872283935546;iRNA_m5C:0.999536712157815 12747 chr14 21152235 21152235 1 + C G rs146849858 21152236 + 21152216 21152256 41 GAGGTCCCGGGTTCAAATCCCGGACGAGCCCTCGTGGCTAC GAGGTCCCGGGTTCAAATCGCGGACGAGCCCTCGTGGCTAC < 41bp 1 0.607817961221085 1 0.732941567897797 experiment 0.784364077557831 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818;ENSG00000259171 upstream Human other chr14:21152236 chr14:21152235 . . 0 20 hm5C_associated_SNPs_10456 0 0 1 0 0 unknown 1 0.500233802004572 0.534116864204406 0.999532395990856 hm5C_site_12747 DeepMRMD:0.534116864204406;iRNA_m5C:0.999532395990856 12748 chr14 21152235 21152235 1 + C G rs146849858 21152240 + 21152220 21152260 41 TCCCGGGTTCAAATCCCGGACGAGCCCTCGTGGCTACTGTT TCCCGGGTTCAAATCGCGGACGAGCCCTCGTGGCTACTGTT < 41bp 1 0.187888542637029 1 0.154674619436264 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818;ENSG00000259171 upstream Human other chr14:21152240 chr14:21152235 . . 0 16 hm5C_associated_SNPs_10457 0 0 1 0 0 unknown 1 0.500231643948613 1 0.999536712102773 hm5C_site_12748 DeepMRMD:1;iRNA_m5C:0.999536712102773 12749 chr14 21152235 21152235 1 + C G rs146849858 21152244 + 21152224 21152264 41 GGGTTCAAATCCCGGACGAGCCCTCGTGGCTACTGTTTTTC GGGTTCAAATCGCGGACGAGCCCTCGTGGCTACTGTTTTTC < 41bp 1 0.0579436477349927 1 0.0372527837753296 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ANG;RNASE4 ENSG00000214274;ENSG00000258818;ENSG00000259171 upstream Human other chr14:21152244 chr14:21152235 . . 0 12 hm5C_associated_SNPs_10458 0 0 1 0 0 unknown 1 0.500231642200742 1 0.999536715598516 hm5C_site_12749 DeepMRMD:1;iRNA_m5C:0.999536715598516 12750 chr14 21152235 21152235 1 + C G rs146849858 21152245 + 21152225 21152265 41 GGTTCAAATCCCGGACGAGCCCTCGTGGCTACTGTTTTTCC GGTTCAAATCGCGGACGAGCCCTCGTGGCTACTGTTTTTCC < 41bp 1 0.162506861657028 1 0.143843501806259 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ANG;RNASE4 ENSG00000214274;ENSG00000258818;ENSG00000259171 upstream Human other chr14:21152245 chr14:21152235 . . 0 11 hm5C_associated_SNPs_10459 0 0 1 0 0 unknown 1 0.500231642855185 1 0.999536714289629 hm5C_site_12750 DeepMRMD:1;iRNA_m5C:0.999536714289629 12751 chr14 21462733 21462733 1 + A G rs373040366 21462722 + 21462702 21462742 41 GTGGTTCAGAATCTGGGGAGCCTTATATTCCAGGTGTCTTT GTGGTTCAGAATCTGGGGAGCCTTATATTCCGGGTGTCTTT < 41bp 1 0.0804766480575353 1 0.015078067779541 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21462722 chr14:21462733 synonymous SNV . 0 32 hm5C_associated_SNPs_10461 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12751 DeepMRMD:1;iRNA_m5C:0.999536712157815 12752 chr14 21543514 21543514 1 + C T rs61739627 21543511 + 21543491 21543531 41 GACACACAGGCCCAGAAGGCCCCCTGTCTGACACTCCAACA GACACACAGGCCCAGAAGGCCCCTTGTCTGACACTCCAACA < 41bp 1 0.047934614814887 1 0.03591588139534 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21543511 chr14:21543514 synonymous SNV . 0 24 hm5C_associated_SNPs_10462 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12752 DeepMRMD:1;iRNA_m5C:0.999536712157815 12753 chr14 21543514 21543514 1 + C T rs61739627 21543512 + 21543492 21543532 41 ACACACAGGCCCAGAAGGCCCCCTGTCTGACACTCCAACAC ACACACAGGCCCAGAAGGCCCCTTGTCTGACACTCCAACAC < 41bp 1 0.0627168802156346 1 0.0310387313365936 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21543512 chr14:21543514 synonymous SNV . 0 23 hm5C_associated_SNPs_10463 0 0 1 0 1 Cytosol 1 0.500231643915355 1 0.999536712169291 hm5C_site_12753 DeepMRMD:1;iRNA_m5C:0.999536712169291 12754 chr14 21553004 21553004 1 + C T rs749731 21553017 + 21552997 21553037 41 TTCTCTTCGAGCATCTCCTCCTGTTCAGCAAGCTCAAGGGC TTCTCTTTGAGCATCTCCTCCTGTTCAGCAAGCTCAAGGGC < 41bp 1 0.136131236815016 1 0.163815885782242 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21553017 chr14:21553004 synonymous SNV . 0 8 hm5C_associated_SNPs_10464 0 0 1 0 2 Cytosol 1 0.500231643942903 1 0.999536712114195 hm5C_site_12754 DeepMRMD:1;iRNA_m5C:0.999536712114195 12755 chr14 23311892 23311892 1 + C G rs371769574 23311874 + 23311854 23311894 41 GGCCCCAACATTGGAGGAGACACCCACTTTGACTCTGCCGA GGCCCCAACATTGGAGGAGACACCCACTTTGACTCTGCGGA < 41bp 1 0.247680661049729 1 0.0705918669700623 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311874 chr14:23311892 synonymous SNV . 0 39 hm5C_associated_SNPs_10467 0 0 0 0 1 cytosol 1 0.500231643921103 1 0.999536712157794 hm5C_site_12755 DeepMRMD:1;iRNA_m5C:0.999536712157794 12756 chr14 23341328 23341328 1 + A G rs56248501 23341343 + 23341323 23341363 41 CCCCTACTCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCC CCCCTGCTCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCC < 41bp 1 0.453229799967032 1 0.723110556602478 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP10 ENSG00000197324 UTR5 Human protein_coding chr14:23341343 chr14:23341328 . . 0 6 hm5C_associated_SNPs_10468 0 0 1 0 0 Ribosome 1 0.500231644465472 0.553778886795044 0.999536711069056 hm5C_site_12756 DeepMRMD:0.553778886795044;iRNA_m5C:0.999536711069056 12757 chr14 23341328 23341328 1 + A G rs56248501 23341344 + 23341324 23341364 41 CCCTACTCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCCT CCCTGCTCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCCT < 41bp 1 0.553658426206662 1 0.743054509162903 experiment 0.892683147586675 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP10 ENSG00000197324 UTR5 Human protein_coding chr14:23341344 chr14:23341328 . . 0 5 hm5C_associated_SNPs_10469 0 0 1 0 0 Ribosome 1 0.500231643921092 0.513890981674194 0.999536712157815 hm5C_site_12757 DeepMRMD:0.513890981674194;iRNA_m5C:0.999536712157815 12758 chr14 23341328 23341328 1 + A G rs56248501 23341346 + 23341326 23341366 41 CTACTCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCCTGG CTGCTCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCCTGG < 41bp 1 0.148531720988702 1 0.357043862342834 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP10 ENSG00000197324 UTR5 Human protein_coding chr14:23341346 chr14:23341328 . . 0 3 hm5C_associated_SNPs_10470 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_12758 DeepMRMD:1;iRNA_m5C:0.999536712157814 12759 chr14 23341328 23341328 1 + A G rs56248501 23341347 + 23341327 23341367 41 TACTCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCCTGGC TGCTCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCCTGGC < 41bp 1 0.481320957624369 1 0.34933602809906 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP10 ENSG00000197324 UTR5 Human protein_coding chr14:23341347 chr14:23341328 . . 0 2 hm5C_associated_SNPs_10471 0 0 1 0 0 Ribosome 1 0.500231643921276 1 0.999536712157447 hm5C_site_12759 DeepMRMD:1;iRNA_m5C:0.999536712157447 12760 chr14 23341349 23341349 1 + C T rs56859206 23341343 + 23341323 23341363 41 CCCCTACTCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCC CCCCTACTCCCGGGCTGCCGCCGCCTTCCCGCCCCCAGCCC < 41bp 1 0.518277225267755 1 0.614984512329102 experiment 0.96344554946449 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP10 ENSG00000197324 UTR5 Human protein_coding chr14:23341343 chr14:23341349 . . 0 27 hm5C_associated_SNPs_10472 0 0 1 0 0 Ribosome 1 0.500231643921092 0.770030975341796 0.999536712157815 hm5C_site_12760 DeepMRMD:0.770030975341796;iRNA_m5C:0.999536712157815 12761 chr14 23341349 23341349 1 + C T rs56859206 23341344 + 23341324 23341364 41 CCCTACTCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCCT CCCTACTCCCGGGCTGCCGCCGCCTTCCCGCCCCCAGCCCT < 41bp 1 0.586779194937855 1 0.37579470872879 experiment 0.82644161012429 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP10 ENSG00000197324 UTR5 Human protein_coding chr14:23341344 chr14:23341349 . . 0 26 hm5C_associated_SNPs_10473 0 0 1 0 0 Ribosome 1 0.500231643921144 1 0.999536712157712 hm5C_site_12761 DeepMRMD:1;iRNA_m5C:0.999536712157712 12762 chr14 23341349 23341349 1 + C T rs56859206 23341346 + 23341326 23341366 41 CTACTCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCCTGG CTACTCCCGGGCTGCCGCCGCCTTCCCGCCCCCAGCCCTGG < 41bp 1 0.0894491707965461 1 0.155769884586334 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP10 ENSG00000197324 UTR5 Human protein_coding chr14:23341346 chr14:23341349 . . 0 24 hm5C_associated_SNPs_10474 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_12762 DeepMRMD:1;iRNA_m5C:0.999536712157813 12763 chr14 23341349 23341349 1 + C T rs56859206 23341347 + 23341327 23341367 41 TACTCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCCTGGC TACTCCCGGGCTGCCGCCGCCTTCCCGCCCCCAGCCCTGGC < 41bp 1 0.289525908278212 1 0.0807730555534363 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP10 ENSG00000197324 UTR5 Human protein_coding chr14:23341347 chr14:23341349 . . 0 23 hm5C_associated_SNPs_10475 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12763 DeepMRMD:1;iRNA_m5C:0.999536712157815 12764 chr14 23341349 23341349 1 + C T rs56859206 23341350 + 23341330 23341370 41 TCCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCCTGGCATC TCCCGGGCTGCCGCCGCCTTCCCGCCCCCAGCCCTGGCATC < 41bp 1 0.501242987386954 1 0.590849816799164 experiment 0.997514025226091 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP10 ENSG00000197324 UTR5 Human protein_coding chr14:23341350 chr14:23341349 . . 0 20 hm5C_associated_SNPs_10476 0 0 1 0 0 Ribosome 1 0.500231643961357 0.818300366401672 0.999536712077287 hm5C_site_12764 DeepMRMD:0.818300366401672;iRNA_m5C:0.999536712077287 12765 chr14 23341349 23341349 1 + C T rs56859206 23341351 + 23341331 23341371 41 CCCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCCTGGCATCC CCCGGGCTGCCGCCGCCTTCCCGCCCCCAGCCCTGGCATCC < 41bp 1 0.453039860237194 1 0.274400889873505 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP10 ENSG00000197324 UTR5 Human protein_coding chr14:23341351 chr14:23341349 . . 0 19 hm5C_associated_SNPs_10477 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12765 DeepMRMD:1;iRNA_m5C:0.999536712157815 12766 chr14 23341349 23341349 1 + C T rs56859206 23341352 + 23341332 23341372 41 CCGGGCTGCCGCCGCCTCCCCGCCCCCAGCCCTGGCATCCA CCGGGCTGCCGCCGCCTTCCCGCCCCCAGCCCTGGCATCCA < 41bp 1 0.635561707810303 1 0.759906411170959 experiment 0.728876584379394 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP10 ENSG00000197324 UTR5 Human protein_coding chr14:23341352 chr14:23341349 . . 0 18 hm5C_associated_SNPs_10478 0 0 1 0 0 Ribosome 1 0.500231644096393 0.480187177658082 0.999536711807213 hm5C_site_12766 DeepMRMD:0.480187177658082;iRNA_m5C:0.999536711807213 12767 chr14 24025505 24025505 1 + C A rs74039346 24025488 + 24025468 24025508 41 ACTGCTCCCGGCATTCCTCGCGAGTGTATGGCGTGGGCTCC ACTGCTCCCGGCATTCCTCGCGAGTGTATGGCGTGGGATCC < 41bp 1 0.685883862171584 1 0.910886108875275 experiment 0.628232275656832 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control THTPA ENSG00000157306 ncRNA_exonic Human processed_transcript chr14:24025488 chr14:24025505 . . 0 38 hm5C_associated_SNPs_10480 0 0 1 0 1 Cytosol 1 0.500218374514524 0.17822778224945 0.999563250970951 hm5C_site_12767 DeepMRMD:0.17822778224945;iRNA_m5C:0.999563250970951 12768 chr14 24105681 24105681 1 + G A rs150738228 24105701 + 24105681 24105721 41 GTAACACTCACCGCGAAGGTCTGCAACTTCACTCCTGGGGC ATAACACTCACCGCGAAGGTCTGCAACTTCACTCCTGGGGC < 41bp 1 0.595501992592373 1 0.731002449989319 experiment 0.808996014815253 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHRS2 ENSG00000100867 UTR5 Human protein_coding chr14:24105701 chr14:24105681 . . 0 1 hm5C_associated_SNPs_10481 0 0 1 0 0 Ribosome 1 0.50023052464793 0.537995100021362 0.999538950704139 hm5C_site_12768 DeepMRMD:0.537995100021362;iRNA_m5C:0.999538950704139 12769 chr14 24105693 24105693 1 + G A rs138908130 24105701 + 24105681 24105721 41 GTAACACTCACCGCGAAGGTCTGCAACTTCACTCCTGGGGC GTAACACTCACCACGAAGGTCTGCAACTTCACTCCTGGGGC < 41bp 1 0.539659092575625 1 0.612451076507568 experiment 0.920681814848749 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHRS2 ENSG00000100867 UTR5 Human protein_coding chr14:24105701 chr14:24105693 . . 0 13 hm5C_associated_SNPs_10482 0 0 1 0 0 Ribosome 1 0.500231416359182 0.775097846984864 0.999537167281636 hm5C_site_12769 DeepMRMD:0.775097846984864;iRNA_m5C:0.999537167281636 12770 chr14 24105695 24105695 1 + G A rs185214176 24105701 + 24105681 24105721 41 GTAACACTCACCGCGAAGGTCTGCAACTTCACTCCTGGGGC GTAACACTCACCGCAAAGGTCTGCAACTTCACTCCTGGGGC < 41bp 1 0.616524437686269 1 0.735820710659027 experiment 0.766951124627462 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHRS2 ENSG00000100867 UTR5 Human protein_coding chr14:24105701 chr14:24105695 . . 0 15 hm5C_associated_SNPs_10483 0 0 1 0 0 Ribosome 1 0.500231643084232 0.528358578681946 0.999536713831536 hm5C_site_12770 DeepMRMD:0.528358578681946;iRNA_m5C:0.999536713831536 12771 chr14 24567504 24567504 1 + C T rs140683877 24567497 + 24567477 24567517 41 CTTCTCAGCGGGACACGGTACAACTCCCGCCTGGTGGGGCC CTTCTCAGCGGGACACGGTACAACTCCTGCCTGGTGGGGCC < 41bp 1 0.582962281397159 1 0.169971823692322 experiment 0.834075437205681 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24567497 chr14:24567504 nonsynonymous SNV 0.328 0 28 hm5C_associated_SNPs_10485 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157812 hm5C_site_12771 DeepMRMD:1;iRNA_m5C:0.999536712157812 12772 chr14 24567508 24567508 1 + T C rs2229661 24567497 + 24567477 24567517 41 CTTCTCAGCGGGACACGGTACAACTCCCGCCTGGTGGGGCC CTTCTCAGCGGGACACGGTACAACTCCCGCCCGGTGGGGCC < 41bp 1 0.570940934267038 1 0.069913238286972 experiment 0.858118131465925 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24567497 chr14:24567508 synonymous SNV . 0 32 hm5C_associated_SNPs_10486 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921205 1 0.999536712157589 hm5C_site_12772 DeepMRMD:1;iRNA_m5C:0.999536712157589 12773 chr14 24568323 24568323 1 + C T rs75497728 24568331 + 24568311 24568351 41 GTGCCCGACCAGCGGGAGATCATCTCCTTCGGCAGCGGCTA GTGCCCGACCAGTGGGAGATCATCTCCTTCGGCAGCGGCTA < 41bp 1 0.292058318739974 1 0.150264292955399 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24568331 chr14:24568323 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_10487 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12773 DeepMRMD:1;iRNA_m5C:0.999536712157815 12774 chr14 24568340 24568340 1 + C T rs149974910 24568331 + 24568311 24568351 41 GTGCCCGACCAGCGGGAGATCATCTCCTTCGGCAGCGGCTA GTGCCCGACCAGCGGGAGATCATCTCCTTTGGCAGCGGCTA < 41bp 1 0.256912945047723 1 0.225825428962708 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24568331 chr14:24568340 synonymous SNV . 0 30 hm5C_associated_SNPs_10488 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921087 1 0.999536712157827 hm5C_site_12774 DeepMRMD:1;iRNA_m5C:0.999536712157827 12775 chr14 24701864 24701864 1 + T C rs191362314 24701874 + 24701854 24701894 41 GCAACCTCAGTGCGTGAACTCTGTTATCCAGAAGGCCTCGC GCAACCTCAGCGCGTGAACTCTGTTATCCAGAAGGCCTCGC < 41bp 1 0.456996852348221 1 0.0421622097492218 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GMPR2 ENSG00000100938 UTR5 Human protein_coding chr14:24701874 chr14:24701864 . . 0 11 hm5C_associated_SNPs_10489 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12775 DeepMRMD:1;iRNA_m5C:0.999536712157815 12776 chr14 24701872 24701872 1 + C T rs146484472 24701874 + 24701854 24701894 41 GCAACCTCAGTGCGTGAACTCTGTTATCCAGAAGGCCTCGC GCAACCTCAGTGCGTGAATTCTGTTATCCAGAAGGCCTCGC < 41bp 1 0.42133184017553 1 0.0338352024555206 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GMPR2 ENSG00000100938 UTR5 Human protein_coding chr14:24701874 chr14:24701872 . . 0 19 hm5C_associated_SNPs_10490 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12776 DeepMRMD:1;iRNA_m5C:0.999536712157815 12777 chr14 24707987 24707987 1 + C T rs45572034 24707977 + 24707957 24707997 41 GAATCCAATCTTCAGTGAGGCGTGCTAGACCTGAGCAGTTC GAATCCAATCTTCAGTGAGGCGTGCTAGACTTGAGCAGTTC < 41bp 1 0.394985197270358 1 0.24233490228653 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPR2 ENSG00000100938 UTR3 Human protein_coding chr14:24707977 chr14:24707987 . . 0 31 hm5C_associated_SNPs_10491 0 0 1 0 0 Ribosome 1 0.500231645160411 1 0.999536709679179 hm5C_site_12777 DeepMRMD:1;iRNA_m5C:0.999536709679179 12778 chr14 24773387 24773387 1 + T C rs2144494 24773383 + 24773363 24773403 41 GACGGGACCACAGCTTCTGTCCCTTGCCCAAAGTCCCGCTG GACGGGACCACAGCTTCTGTCCCTCGCCCAAAGTCCCGCTG < 41bp 1 0.14157074949073 1 0.121186465024948 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOP9 ENSG00000196943 CDS Human protein_coding chr14:24773383 chr14:24773387 synonymous SNV . 0 25 hm5C_associated_SNPs_10492 0 0 1 0 1 Nucleus 1 0.500231643921108 1 0.999536712157785 hm5C_site_12778 DeepMRMD:1;iRNA_m5C:0.999536712157785 12779 chr14 24779933 24779933 1 + C A rs115630307 24779945 + 24779925 24779965 41 TCGCGGGCCACAGGCACAGCCTTCCTGCTGCTGGCGGCGCT TCGCGGGCAACAGGCACAGCCTTCCTGCTGCTGGCGGCGCT < 41bp 1 0.18187394428187 1 0.28450533747673 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTB4R2 ENSG00000213906;ENSG00000272658 CDS Human other chr14:24779945 chr14:24779933 synonymous SNV . 0 9 hm5C_associated_SNPs_10493 0 0 1 0 1 chromatin 1 0.500231643920842 1 0.999536712158315 hm5C_site_12779 DeepMRMD:1;iRNA_m5C:0.999536712158315 12780 chr14 24784911 24784911 1 + T C rs3742511 24784923 + 24784903 24784943 41 TTCATCTCTCTGCTGGCTATCATCCTGCTGTCAGTGGCGCT TTCATCTCCCTGCTGGCTATCATCCTGCTGTCAGTGGCGCT < 41bp 1 0.114607541433437 1 0.778288424015045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LTB4R ENSG00000213903 CDS Human protein_coding chr14:24784923 chr14:24784911 synonymous SNV . 0 9 hm5C_associated_SNPs_10494 0 0 1 0 1 Nucleus 1 0.500231642653952 0.44342315196991 0.999536714692095 hm5C_site_12780 DeepMRMD:0.44342315196991;iRNA_m5C:0.999536714692095 12781 chr14 24887238 24887238 1 + T A rs74036632 24887251 + 24887231 24887271 41 GCACAGCTCTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTC GCACAGCACTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTC < 41bp 1 0.518289591079541 1 0.230583012104034 experiment 0.963420817840918 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NYNRIN ENSG00000205978 UTR3 Human protein_coding chr14:24887251 chr14:24887238 . . 0 8 hm5C_associated_SNPs_10495 0 0 0 0 0 Exosome 1 0.500231637967453 1 0.999536724065094 hm5C_site_12781 DeepMRMD:1;iRNA_m5C:0.999536724065094 12782 chr14 24887238 24887238 1 + T A rs74036632 24887255 + 24887235 24887275 41 AGCTCTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTCAAGG AGCACTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTCAAGG < 41bp 1 0.0672153922533251 1 0.16460582613945 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NYNRIN ENSG00000205978 UTR3 Human protein_coding chr14:24887255 chr14:24887238 . . 0 4 hm5C_associated_SNPs_10496 0 0 0 0 0 Exosome 1 0.500219728130155 1 0.999560543739689 hm5C_site_12782 DeepMRMD:1;iRNA_m5C:0.999560543739689 12783 chr14 24887238 24887238 1 + T A rs74036632 24887256 + 24887236 24887276 41 GCTCTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTCAAGGG GCACTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTCAAGGG < 41bp 1 0.208656674817093 1 0.0975787341594696 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NYNRIN ENSG00000205978 UTR3 Human protein_coding chr14:24887256 chr14:24887238 . . 0 3 hm5C_associated_SNPs_10497 0 0 0 0 0 Exosome 1 0.500231643921009 1 0.999536712157981 hm5C_site_12783 DeepMRMD:1;iRNA_m5C:0.999536712157981 12784 chr14 24887239 24887239 1 + C G rs11627882 24887251 + 24887231 24887271 41 GCACAGCTCTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTC GCACAGCTGTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTC < 41bp 1 0.553613147154406 1 0.202492266893387 experiment 0.892773705691188 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NYNRIN ENSG00000205978 UTR3 Human protein_coding chr14:24887251 chr14:24887239 . . 0 9 hm5C_associated_SNPs_10498 0 0 0 0 0 Exosome 1 0.500231643697942 1 0.999536712604116 hm5C_site_12784 DeepMRMD:1;iRNA_m5C:0.999536712604116 12785 chr14 24887239 24887239 1 + C G rs11627882 24887255 + 24887235 24887275 41 AGCTCTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTCAAGG AGCTGTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTCAAGG < 41bp 1 0.0731573070008521 1 0.224173575639725 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NYNRIN ENSG00000205978 UTR3 Human protein_coding chr14:24887255 chr14:24887239 . . 0 5 hm5C_associated_SNPs_10499 0 0 0 0 0 Exosome 1 0.500231643488721 1 0.999536713022558 hm5C_site_12785 DeepMRMD:1;iRNA_m5C:0.999536713022558 12786 chr14 24887239 24887239 1 + C G rs11627882 24887256 + 24887236 24887276 41 GCTCTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTCAAGGG GCTGTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTCAAGGG < 41bp 1 0.226339417580843 1 0.0989303290843964 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NYNRIN ENSG00000205978 UTR3 Human protein_coding chr14:24887256 chr14:24887239 . . 0 4 hm5C_associated_SNPs_10500 0 0 0 0 0 Exosome 1 0.500231643920725 1 0.99953671215855 hm5C_site_12786 DeepMRMD:1;iRNA_m5C:0.99953671215855 12787 chr14 24887239 24887239 1 + C G rs11627882 24887259 + 24887239 24887279 41 CTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTCAAGGGCAG GTCAGGGCAGGGCTGGCCATCCTCCCAGGCCTCAAGGGCAG < 41bp 1 0.0786859215696349 1 0.172540962696075 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NYNRIN ENSG00000205978 UTR3 Human protein_coding chr14:24887259 chr14:24887239 . . 0 1 hm5C_associated_SNPs_10501 0 0 0 0 0 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12787 DeepMRMD:1;iRNA_m5C:0.999536712157815 12788 chr14 24887322 24887322 1 + G A rs532965314 24887302 + 24887282 24887322 41 TCTTGGAGTGGGAGGATGGCCAGCCACAAGCCACCAGCTTG TCTTGGAGTGGGAGGATGGCCAGCCACAAGCCACCAGCTTA < 41bp 1 0.553864330281438 1 0.318456947803497 experiment 0.892271339437125 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NYNRIN ENSG00000205978 UTR3 Human protein_coding chr14:24887302 chr14:24887322 . . 0 41 hm5C_associated_SNPs_10502 0 0 0 0 0 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12788 DeepMRMD:1;iRNA_m5C:0.999536712157815 12789 chr14 24887322 24887322 1 + G A rs532965314 24887305 + 24887285 24887325 41 TGGAGTGGGAGGATGGCCAGCCACAAGCCACCAGCTTGTCA TGGAGTGGGAGGATGGCCAGCCACAAGCCACCAGCTTATCA < 41bp 1 0.343272393438165 1 0.128592431545258 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NYNRIN ENSG00000205978 UTR3 Human protein_coding chr14:24887305 chr14:24887322 . . 0 38 hm5C_associated_SNPs_10503 0 0 0 0 0 Exosome 1 0.500231643969415 1 0.99953671206117 hm5C_site_12789 DeepMRMD:1;iRNA_m5C:0.99953671206117 12790 chr14 24887322 24887322 1 + G A rs532965314 24887306 + 24887286 24887326 41 GGAGTGGGAGGATGGCCAGCCACAAGCCACCAGCTTGTCAG GGAGTGGGAGGATGGCCAGCCACAAGCCACCAGCTTATCAG < 41bp 1 0.646216008949095 1 0.253307580947876 experiment 0.707567982101811 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NYNRIN ENSG00000205978 UTR3 Human protein_coding chr14:24887306 chr14:24887322 . . 0 37 hm5C_associated_SNPs_10504 0 0 0 0 0 Exosome 1 0.500231311324542 1 0.999537377350917 hm5C_site_12790 DeepMRMD:1;iRNA_m5C:0.999537377350917 12791 chr14 24906840 24906840 1 + A G rs80093911 24906853 + 24906833 24906873 41 GGAAGTGACAGGAAGTTAAGCTGTTCCTCTCCCTGGCTGCT GGAAGTGGCAGGAAGTTAAGCTGTTCCTCTCCCTGGCTGCT < 41bp 1 0.204550647813688 1 0.125020086765289 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KHNYN ENSG00000100441 UTR3 Human protein_coding chr14:24906853 chr14:24906840 . . 0 8 hm5C_associated_SNPs_10505 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12791 DeepMRMD:1;iRNA_m5C:0.999536712157815 12792 chr14 24906849 24906849 1 + T A rs10144287 24906853 + 24906833 24906873 41 GGAAGTGACAGGAAGTTAAGCTGTTCCTCTCCCTGGCTGCT GGAAGTGACAGGAAGTAAAGCTGTTCCTCTCCCTGGCTGCT < 41bp 1 0.179084644208452 1 0.0562637746334076 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KHNYN ENSG00000100441 UTR3 Human protein_coding chr14:24906853 chr14:24906849 . . 0 17 hm5C_associated_SNPs_10506 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12792 DeepMRMD:1;iRNA_m5C:0.999536712157815 12793 chr14 24906866 24906866 1 + T C rs115319005 24906853 + 24906833 24906873 41 GGAAGTGACAGGAAGTTAAGCTGTTCCTCTCCCTGGCTGCT GGAAGTGACAGGAAGTTAAGCTGTTCCTCTCCCCGGCTGCT < 41bp 1 0.198859803715344 1 0.0939694344997406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KHNYN ENSG00000100441 UTR3 Human protein_coding chr14:24906853 chr14:24906866 . . 0 34 hm5C_associated_SNPs_10507 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12793 DeepMRMD:1;iRNA_m5C:0.999536712157815 12794 chr14 24907513 24907513 1 + G A rs58499825 24907497 + 24907477 24907517 41 TGGTGTTGAGATGAACACGTCGATTTTTCACCAATCGATGA TGGTGTTGAGATGAACACGTCGATTTTTCACCAATCAATGA < 41bp 1 0.112095463954823 1 0.0424484312534332 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KHNYN ENSG00000100441 UTR3 Human protein_coding chr14:24907497 chr14:24907513 . . 0 37 hm5C_associated_SNPs_10508 0 0 1 0 0 Cytosol 1 0.500237673253865 1 0.999524653492271 hm5C_site_12794 DeepMRMD:1;iRNA_m5C:0.999524653492271 12795 chr14 24907925 24907925 1 + G A rs578021184 24907938 + 24907918 24907958 41 CACCTTTGAGGCTGGTCATACCTCCAGGAACAATACAGAGC CACCTTTAAGGCTGGTCATACCTCCAGGAACAATACAGAGC < 41bp 1 0.0286810606846971 1 0.0746482908725739 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KHNYN ENSG00000100441 UTR3 Human protein_coding chr14:24907938 chr14:24907925 . . 0 8 hm5C_associated_SNPs_10509 0 0 1 0 0 Cytosol 1 0.500231643921895 1 0.99953671215621 hm5C_site_12795 DeepMRMD:1;iRNA_m5C:0.99953671215621 12796 chr14 24909629 24909629 1 + C A rs11538256 24909627 - 24909607 24909647 41 TTCGCCTGGGCCTGGGGGGCCCCATCGGCTCAGGCCACCAA TTCGCCTGGGCCTGGGGGTCCCCATCGGCTCAGGCCACCAA < 41bp 1 0.356832918178708 1 0.160373687744141 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SDR39U1 ENSG00000100445 CDS Human protein_coding chr14:24909627 chr14:24909629 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_10510 0 0 1 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12796 DeepMRMD:1;iRNA_m5C:0.999536712157815 12797 chr14 31494964 31494964 1 + G A rs147839434 31494972 + 31494952 31494992 41 GGAAAAGCCGTTGAGAGGACCATCACAACCTGAGCAGCACA GGAAAAGCCGTTAAGAGGACCATCACAACCTGAGCAGCACA < 41bp 1 0.277746929080624 1 0.30360934138298 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP4S1 ENSG00000100478 UTR5 Human protein_coding chr14:31494972 chr14:31494964 . . 0 13 hm5C_associated_SNPs_10511 0 0 1 0 1 Cytosol 1 0.500231642750072 1 0.999536714499856 hm5C_site_12797 DeepMRMD:1;iRNA_m5C:0.999536714499856 12798 chr14 31494988 31494988 1 + G A rs78648016 31494972 + 31494952 31494992 41 GGAAAAGCCGTTGAGAGGACCATCACAACCTGAGCAGCACA GGAAAAGCCGTTGAGAGGACCATCACAACCTGAGCAACACA < 41bp 1 0.317287475281829 1 0.293773949146271 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP4S1 ENSG00000100478 UTR5 Human protein_coding chr14:31494972 chr14:31494988 . . 0 37 hm5C_associated_SNPs_10512 1 0 1 0 1 Cytosol 1 0.500231619597374 1 0.999536760805252 hm5C_site_12798 DeepMRMD:1;iRNA_m5C:0.999536760805252 not specified not specified 12799 chr14 32546205 32546205 1 + C A rs535880509 32546207 + 32546187 32546227 41 CAGGCTGCGCCGCCGCGCCGCCGCTCCGCCCCCGGTCGGGT CAGGCTGCGCCGCCGCGCAGCCGCTCCGCCCCCGGTCGGGT < 41bp 1 0.298110307437856 1 0.134923726320267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP5;ARHGAP5-AS1 ENSG00000100852 UTR5 Human protein_coding chr14:32546207 chr14:32546205 . . 0 19 hm5C_associated_SNPs_10515 0 0 0 0 1 unknown 1 0.500231643921122 1 0.999536712157756 hm5C_site_12799 DeepMRMD:1;iRNA_m5C:0.999536712157756 12800 chr14 37739659 37739659 1 + A T rs35870036 37739679 + 37739659 37739699 41 AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA TGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA < 41bp 1 0.647710852890296 1 0.457667768001556 experiment 0.704578294219407 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37739679 chr14:37739659 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_10516 0 0 1 0 2 chromatin 1 0.500231650181278 1 0.999536699637443 hm5C_site_12800 DeepMRMD:1;iRNA_m5C:0.999536699637443 12801 chr14 45580129 45580129 1 + A G rs75940101 45580111 + 45580091 45580131 41 ACTGTGATGAAAGATTTGGTCTGTATGTAATAGATTTTATT ACTGTGATGAAAGATTTGGTCTGTATGTAATAGATTTTGTT < 41bp 1 0.335684265429817 1 0.14521461725235 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD127 ENSG00000239043 ncRNA_exonic Human snoRNA chr14:45580111 chr14:45580129 . . 0 39 hm5C_associated_SNPs_10518 0 0 1 2 0 unknown 1 0.500231808214299 1 0.999536383571402 hm5C_site_12801 DeepMRMD:1;iRNA_m5C:0.999536383571402 12802 chr14 50053582 50053582 1 + C T rs531730938 50053562 + 50053542 50053582 41 GCCTGTGAATAGCCACTGCACTCCAGCCTGGGCAACATAGC GCCTGTGAATAGCCACTGCACTCCAGCCTGGGCAACATAGT < 41bp 1 0.595293537696096 1 0.450301915407181 experiment 0.809412924607808 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053562 chr14:50053582 . . 0 41 hm5C_associated_SNPs_10519 0 0 1 0 0 Cytosol 1 0.500231642875343 1 0.999536714249313 hm5C_site_12802 DeepMRMD:1;iRNA_m5C:0.999536714249313 12803 chr14 50053582 50053582 1 + C T rs531730938 50053564 + 50053544 50053584 41 CTGTGAATAGCCACTGCACTCCAGCCTGGGCAACATAGCGA CTGTGAATAGCCACTGCACTCCAGCCTGGGCAACATAGTGA < 41bp 1 0.265296747757994 1 0.232406824827194 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053564 chr14:50053582 . . 0 39 hm5C_associated_SNPs_10520 0 0 1 0 0 Cytosol 1 0.500231654276721 1 0.999536691446559 hm5C_site_12803 DeepMRMD:1;iRNA_m5C:0.999536691446559 12804 chr14 50053582 50053582 1 + C T rs531730938 50053565 + 50053545 50053585 41 TGTGAATAGCCACTGCACTCCAGCCTGGGCAACATAGCGAG TGTGAATAGCCACTGCACTCCAGCCTGGGCAACATAGTGAG < 41bp 1 0.355820528957746 1 0.47395920753479 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053565 chr14:50053582 . . 0 38 hm5C_associated_SNPs_10521 0 0 1 0 0 Cytosol 1 0.50023164390754 1 0.999536712184919 hm5C_site_12804 DeepMRMD:1;iRNA_m5C:0.999536712184919 12805 chr14 50053582 50053582 1 + C T rs531730938 50053568 + 50053548 50053588 41 GAATAGCCACTGCACTCCAGCCTGGGCAACATAGCGAGACC GAATAGCCACTGCACTCCAGCCTGGGCAACATAGTGAGACC < 41bp 1 0.211860076829178 1 0.155144959688187 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053568 chr14:50053582 . . 0 35 hm5C_associated_SNPs_10522 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12805 DeepMRMD:1;iRNA_m5C:0.999536712157815 12806 chr14 50053582 50053582 1 + C T rs531730938 50053569 + 50053549 50053589 41 AATAGCCACTGCACTCCAGCCTGGGCAACATAGCGAGACCC AATAGCCACTGCACTCCAGCCTGGGCAACATAGTGAGACCC < 41bp 1 0.644392859754633 1 0.488883167505264 experiment 0.711214280490734 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053569 chr14:50053582 . . 0 34 hm5C_associated_SNPs_10523 0 0 1 0 0 Cytosol 1 0.500231643903307 1 0.999536712193387 hm5C_site_12806 DeepMRMD:1;iRNA_m5C:0.999536712193387 12807 chr14 50053582 50053582 1 + C T rs531730938 50053574 + 50053554 50053594 41 CCACTGCACTCCAGCCTGGGCAACATAGCGAGACCCCGTCT CCACTGCACTCCAGCCTGGGCAACATAGTGAGACCCCGTCT < 41bp 1 0.601400112427909 1 0.0666337013244629 experiment 0.797199775144182 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053574 chr14:50053582 . . 0 29 hm5C_associated_SNPs_10524 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12807 DeepMRMD:1;iRNA_m5C:0.999536712157815 12808 chr14 50053582 50053582 1 + C T rs531730938 50053577 + 50053557 50053597 41 CTGCACTCCAGCCTGGGCAACATAGCGAGACCCCGTCTCTT CTGCACTCCAGCCTGGGCAACATAGTGAGACCCCGTCTCTT < 41bp 1 0.144726631586338 1 0.132319927215576 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053577 chr14:50053582 . . 0 26 hm5C_associated_SNPs_10525 0 0 1 0 0 Cytosol 1 0.500231780931996 1 0.999536438136009 hm5C_site_12808 DeepMRMD:1;iRNA_m5C:0.999536438136009 12809 chr14 50053582 50053582 1 + C T rs531730938 50053587 + 50053567 50053607 41 GCCTGGGCAACATAGCGAGACCCCGTCTCTTTTGAACAATA GCCTGGGCAACATAGTGAGACCCCGTCTCTTTTGAACAATA < 41bp 1 0.10850224754583 1 0.0605081617832184 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053587 chr14:50053582 . . 0 16 hm5C_associated_SNPs_10526 0 0 1 0 0 Cytosol 1 0.500231643780709 1 0.999536712438582 hm5C_site_12809 DeepMRMD:1;iRNA_m5C:0.999536712438582 12810 chr14 50053582 50053582 1 + C T rs531730938 50053588 + 50053568 50053608 41 CCTGGGCAACATAGCGAGACCCCGTCTCTTTTGAACAATAA CCTGGGCAACATAGTGAGACCCCGTCTCTTTTGAACAATAA < 41bp 1 0.186626622207239 1 0.29499340057373 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|28418038;GSE74771;RNA-BisSeq;293T;Control RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053588 chr14:50053582 . . 0 15 hm5C_associated_SNPs_10527 0 0 1 0 0 Cytosol 1 0.500232307625651 1 0.999535384748698 hm5C_site_12810 DeepMRMD:1;iRNA_m5C:0.999535384748698 12811 chr14 50053582 50053582 1 + C T rs531730938 50053589 + 50053569 50053609 41 CTGGGCAACATAGCGAGACCCCGTCTCTTTTGAACAATAAA CTGGGCAACATAGTGAGACCCCGTCTCTTTTGAACAATAAA < 41bp 1 0.0263801915720969 1 0.248982489109039 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053589 chr14:50053582 . . 0 14 hm5C_associated_SNPs_10528 0 0 1 0 0 Cytosol 1 0.500231643922596 1 0.999536712154807 hm5C_site_12811 DeepMRMD:1;iRNA_m5C:0.999536712154807 12812 chr14 50053582 50053582 1 + C T rs531730938 50053590 + 50053570 50053610 41 TGGGCAACATAGCGAGACCCCGTCTCTTTTGAACAATAAAT TGGGCAACATAGTGAGACCCCGTCTCTTTTGAACAATAAAT < 41bp 1 0.0801729781565215 1 0.249546587467194 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|28418038;GSE74771;RNA-BisSeq;293T;Control RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053590 chr14:50053582 . . 0 13 hm5C_associated_SNPs_10529 0 0 1 0 0 Cytosol 1 0.50041422161583 1 0.999171556768339 hm5C_site_12812 DeepMRMD:1;iRNA_m5C:0.999171556768339 12813 chr14 50053582 50053582 1 + C T rs531730938 50053593 + 50053573 50053613 41 GCAACATAGCGAGACCCCGTCTCTTTTGAACAATAAATACG GCAACATAGTGAGACCCCGTCTCTTTTGAACAATAAATACG < 41bp 1 0.0842938170410916 1 0.22471359372139 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053593 chr14:50053582 . . 0 10 hm5C_associated_SNPs_10530 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12813 DeepMRMD:1;iRNA_m5C:0.999536712157815 12814 chr14 50053582 50053582 1 + C T rs531730938 50053595 + 50053575 50053615 41 AACATAGCGAGACCCCGTCTCTTTTGAACAATAAATACGTT AACATAGTGAGACCCCGTCTCTTTTGAACAATAAATACGTT < 41bp 1 0.0367587606057822 1 0.288205474615097 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS29 ENSG00000258486 ncRNA_exonic Human other chr14:50053595 chr14:50053582 . . 0 8 hm5C_associated_SNPs_10531 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157811 hm5C_site_12814 DeepMRMD:1;iRNA_m5C:0.999536712157811 12815 chr14 50789387 50789387 1 + C T rs142828913 50789391 + 50789371 50789411 41 AAATACAAGATTCAGGCGATCGACGCCACCGACTCTTGTAT AAATACAAGATTCAGGTGATCGACGCCACCGACTCTTGTAT < 41bp 1 0.671794991286447 1 0.306312024593353 experiment 0.656410017427107 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789391 chr14:50789387 nonsynonymous SNV 0.552 3 17 hm5C_associated_SNPs_10532 0 0 1 0 1 Cytosol 1 0.500231645139097 1 0.999536709721805 hm5C_site_12815 DeepMRMD:1;iRNA_m5C:0.999536709721805 12816 chr14 50789387 50789387 1 + C T rs142828913 50789396 + 50789376 50789416 41 CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATCATGA CAAGATTCAGGTGATCGACGCCACCGACTCTTGTATCATGA < 41bp 1 0.0701681269424274 1 0.118468761444092 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789396 chr14:50789387 nonsynonymous SNV 0.552 3 12 hm5C_associated_SNPs_10533 0 0 1 0 1 Cytosol 1 0.500231643920785 1 0.99953671215843 hm5C_site_12816 DeepMRMD:1;iRNA_m5C:0.99953671215843 12817 chr14 50789400 50789400 1 + C T rs188991727 50789391 + 50789371 50789411 41 AAATACAAGATTCAGGCGATCGACGCCACCGACTCTTGTAT AAATACAAGATTCAGGCGATCGACGCCACTGACTCTTGTAT < 41bp 1 0.569186193042597 1 0.270759165287018 experiment 0.861627613914806 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789391 chr14:50789400 synonymous SNV . 0 30 hm5C_associated_SNPs_10534 0 0 1 0 1 Cytosol 1 0.500231644072707 1 0.999536711854585 hm5C_site_12817 DeepMRMD:1;iRNA_m5C:0.999536711854585 12818 chr14 50789400 50789400 1 + C T rs188991727 50789396 + 50789376 50789416 41 CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATCATGA CAAGATTCAGGCGATCGACGCCACTGACTCTTGTATCATGA < 41bp 1 0.119315395475262 1 0.163827359676361 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789396 chr14:50789400 synonymous SNV . 0 25 hm5C_associated_SNPs_10535 0 0 1 0 1 Cytosol 1 0.50023164826028 1 0.99953670347944 hm5C_site_12818 DeepMRMD:1;iRNA_m5C:0.99953670347944 12819 chr14 52196813 52196813 1 + T C rs115569816 52196805 + 52196785 52196825 41 GCCCAGATCATAATGCAGTGCATTTCCTTAGCCCTTAGAGT GCCCAGATCATAATGCAGTGCATTTCCTCAGCCCTTAGAGT < 41bp 1 0.0925777205147144 1 0.0133806169033051 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FRMD6 ENSG00000139926 UTR3 Human protein_coding chr14:52196805 chr14:52196813 . . 0 29 hm5C_associated_SNPs_10537 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12819 DeepMRMD:1;iRNA_m5C:0.999536712157815 12820 chr14 52471366 52471366 1 + C T rs117652481 52471370 + 52471350 52471390 41 ATGTTCTAGAGATTTACCACCATTGCTTATTGCTTTTTTCT ATGTTCTAGAGATTTATCACCATTGCTTATTGCTTTTTTCT < 41bp 1 0.0839976435601899 1 0.0310723483562469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C14orf166 ENSG00000087302 UTR3 Human protein_coding chr14:52471370 chr14:52471366 . . 0 17 hm5C_associated_SNPs_10538 0 0 1 0 0 Ribosome 1 0.500240774530675 1 0.99951845093865 hm5C_site_12820 DeepMRMD:1;iRNA_m5C:0.99951845093865 12821 chr14 55034579 55034579 1 + G A rs574014794 55034568 + 55034548 55034588 41 GGGGCTGCGGCTCCGCCAAACTTTGGGGCGGGCGGGGCGGG GGGGCTGCGGCTCCGCCAAACTTTGGGGCGGACGGGGCGGG < 41bp 1 0.385127812443004 1 0.495211571455002 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SAMD4A ENSG00000020577 UTR5 Human protein_coding chr14:55034568 chr14:55034579 . . 0 32 hm5C_associated_SNPs_10539 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12821 DeepMRMD:1;iRNA_m5C:0.999536712157815 12822 chr14 55255823 55255823 1 + C T rs184097143 55255817 + 55255797 55255837 41 GATTTTGTGAGAGCGTAGGTCATCCTCGTAAACATATCAGT GATTTTGTGAGAGCGTAGGTCATCCTTGTAAACATATCAGT < 41bp 1 0.0669674578894022 1 0.0400213897228241 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4A ENSG00000020577 UTR3 Human protein_coding chr14:55255817 chr14:55255823 . . 0 27 hm5C_associated_SNPs_10540 0 0 1 2 0 chromatin 1 0.500231643921082 1 0.999536712157836 hm5C_site_12822 DeepMRMD:1;iRNA_m5C:0.999536712157836 12823 chr14 55531358 55531358 1 + C T rs149884572 55531340 + 55531320 55531360 41 TTTTTCTATTGCAGTCTTACCATTAAGTTAACAATGGACGA TTTTTCTATTGCAGTCTTACCATTAAGTTAACAATGGATGA < 41bp 1 0.207656110519747 1 0.203903883695602 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAPK1IP1L ENSG00000168175 UTR3 Human protein_coding chr14:55531340 chr14:55531358 . . 0 39 hm5C_associated_SNPs_10541 0 0 1 0 1 Ribosome 1 0.500231645916617 1 0.999536708166766 hm5C_site_12823 DeepMRMD:1;iRNA_m5C:0.999536708166766 12824 chr14 55818517 55818517 1 + T A rs1045002 55818536 + 55818516 55818556 41 ATTTTAAACTCCTGTGAAGACCCAGTTCCAGGGATGTTGTT AATTTAAACTCCTGTGAAGACCCAGTTCCAGGGATGTTGTT < 41bp 1 0.310914832385992 1 0.109865456819534 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FBXO34 ENSG00000178974 CDS Human protein_coding chr14:55818536 chr14:55818517 nonsynonymous SNV 0.000 0 2 hm5C_associated_SNPs_10542 0 0 1 0 0 Nucleus 1 0.500231643921087 1 0.999536712157827 hm5C_site_12824 DeepMRMD:1;iRNA_m5C:0.999536712157827 12825 chr14 56150858 56150858 1 + G A rs377030594 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGACATTGTATTATATTTTGCCAA < 41bp 1 0.17037040424426 1 0.114988327026367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150858 . . 0 20 hm5C_associated_SNPs_10543 0 0 1 12 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12825 DeepMRMD:1;iRNA_m5C:0.999536712157815 12826 chr14 56150861 56150861 1 + T C rs571976451 56150859 + 56150839 56150879 41 TCATTTGAGGATAAAAAAGGCATTGTATTATATTTTGCCAA TCATTTGAGGATAAAAAAGGCACTGTATTATATTTTGCCAA < 41bp 1 0.33483950945778 1 0.129716724157333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 UTR3 Human protein_coding chr14:56150859 chr14:56150861 . . 0 23 hm5C_associated_SNPs_10544 0 0 1 14 0 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_12826 DeepMRMD:1;iRNA_m5C:0.999536712157818 12827 chr14 56233181 56233181 1 + G A rs114046980 56233191 + 56233171 56233211 41 GACCAAGCGAGGCCATGCCTCCCTGGACTGCCTCAAGGTGT GACCAAGCGAAGCCATGCCTCCCTGGACTGCCTCAAGGTGT < 41bp 1 0.329092667191672 1 0.282382845878601 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233191 chr14:56233181 . . 0 11 hm5C_associated_SNPs_10545 0 0 0 0 0 unknown 1 0.500231632801696 1 0.999536734396608 hm5C_site_12827 DeepMRMD:1;iRNA_m5C:0.999536734396608 12828 chr14 56233187 56233187 1 + G A rs143378704 56233191 + 56233171 56233211 41 GACCAAGCGAGGCCATGCCTCCCTGGACTGCCTCAAGGTGT GACCAAGCGAGGCCATACCTCCCTGGACTGCCTCAAGGTGT < 41bp 1 0.387277447091902 1 0.391196846961975 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233191 chr14:56233187 . . 0 17 hm5C_associated_SNPs_10546 0 0 0 0 0 unknown 1 0.500231643920917 1 0.999536712158166 hm5C_site_12828 DeepMRMD:1;iRNA_m5C:0.999536712158166 12829 chr14 56233206 56233206 1 + A G rs147137811 56233191 + 56233171 56233211 41 GACCAAGCGAGGCCATGCCTCCCTGGACTGCCTCAAGGTGT GACCAAGCGAGGCCATGCCTCCCTGGACTGCCTCAGGGTGT < 41bp 1 0.37093198237107 1 0.365929335355759 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233191 chr14:56233206 . . 0 36 hm5C_associated_SNPs_10547 0 0 0 0 0 unknown 1 0.500231643921788 1 0.999536712156424 hm5C_site_12829 DeepMRMD:1;iRNA_m5C:0.999536712156424 12830 chr14 56233294 56233294 1 + A G rs112834599 56233306 + 56233286 56233326 41 AAGCCTACAAGAAAGTTTGCCCTTCTGGGGCGACAGGCTCA AAGCCTACGAGAAAGTTTGCCCTTCTGGGGCGACAGGCTCA < 41bp 1 0.0368154501033979 1 0.039372056722641 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233306 chr14:56233294 . . 0 9 hm5C_associated_SNPs_10548 0 0 0 0 0 unknown 1 0.500231643975178 1 0.999536712049644 hm5C_site_12830 DeepMRMD:1;iRNA_m5C:0.999536712049644 12831 chr14 56233307 56233307 1 + C T rs56190279 56233306 + 56233286 56233326 41 AAGCCTACAAGAAAGTTTGCCCTTCTGGGGCGACAGGCTCA AAGCCTACAAGAAAGTTTGCCTTTCTGGGGCGACAGGCTCA < 41bp 1 0.0729772700151549 1 0.0346262454986572 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233306 chr14:56233307 . . 0 22 hm5C_associated_SNPs_10549 0 0 0 0 0 unknown 1 0.500231643921354 1 0.999536712157293 hm5C_site_12831 DeepMRMD:1;iRNA_m5C:0.999536712157293 12832 chr14 56233370 56233370 1 + G A rs180728568 56233356 + 56233336 56233376 41 GTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGA GTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGAAGAAGA < 41bp 1 0.445464544361045 1 0.289557576179504 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233356 chr14:56233370 . . 0 35 hm5C_associated_SNPs_10550 0 0 0 0 0 unknown 1 0.500231643916458 1 0.999536712167084 hm5C_site_12832 DeepMRMD:1;iRNA_m5C:0.999536712167084 12833 chr14 56763455 56763455 1 + C T rs140013898 56763475 + 56763455 56763495 41 CGCCGCCCGGCCTCAGTGTCCTGTGGGGCTCAACACCCTGG TGCCGCCCGGCCTCAGTGTCCTGTGGGGCTCAACACCCTGG < 41bp 1 0.551347604716605 1 0.147564142942429 experiment 0.89730479056679 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PELI2 ENSG00000139946 CDS Human protein_coding chr14:56763475 chr14:56763455 synonymous SNV . 0 1 hm5C_associated_SNPs_10551 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12833 DeepMRMD:1;iRNA_m5C:0.999536712157815 12834 chr14 56763458 56763458 1 + C T rs148290454 56763475 + 56763455 56763495 41 CGCCGCCCGGCCTCAGTGTCCTGTGGGGCTCAACACCCTGG CGCTGCCCGGCCTCAGTGTCCTGTGGGGCTCAACACCCTGG < 41bp 1 0.540501792164715 1 0.236879885196686 experiment 0.918996415670569 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PELI2 ENSG00000139946 CDS Human protein_coding chr14:56763475 chr14:56763458 synonymous SNV . 0 4 hm5C_associated_SNPs_10552 0 0 0 0 0 nucleus 1 0.50023164392881 1 0.99953671214238 hm5C_site_12834 DeepMRMD:1;iRNA_m5C:0.99953671214238 12835 chr14 57858101 57858101 1 + C G rs537688680 57858089 + 57858069 57858109 41 GTACACTCGGGCGAGAGGCCCCCTCACTCCCTCTCTAGTAA GTACACTCGGGCGAGAGGCCCCCTCACTCCCTGTCTAGTAA < 41bp 1 0.0900636995389523 1 0.0607948899269104 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA30 ENSG00000139977 CDS Human protein_coding chr14:57858089 chr14:57858101 synonymous SNV . 0 33 hm5C_associated_SNPs_10553 0 0 1 0 0 Ribosome 1 0.500231643921228 1 0.999536712157544 hm5C_site_12835 DeepMRMD:1;iRNA_m5C:0.999536712157544 12836 chr14 59014522 59014522 1 + G A rs140026883 59014534 + 59014514 59014554 41 CACTCTCCGCTTCACAGATGCCCCCTGCCAAGATGTCAGTG CACTCTCCACTTCACAGATGCCCCCTGCCAAGATGTCAGTG < 41bp 1 0.0918379228687739 1 0.0365717113018036 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0586 ENSG00000100578 CDS Human protein_coding chr14:59014534 chr14:59014522 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_10554 0 0 0 0 1 Nucleus 1 0.500231643524477 1 0.999536712951045 hm5C_site_12836 DeepMRMD:1;iRNA_m5C:0.999536712951045 12837 chr14 59951278 59951278 1 + T C rs10140007 59951294 + 59951274 59951314 41 CTAGTGCTTCTCGAAAAAAACCTTCAGGCGGCCCATGGGTG CTAGCGCTTCTCGAAAAAAACCTTCAGGCGGCCCATGGGTG < 41bp 1 0.0613231347400579 1 0.162271201610565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JKAMP ENSG00000258782 ncRNA_intronic Human processed_transcript chr14:59951294 chr14:59951278 . . 0 5 hm5C_associated_SNPs_10555 0 0 1 0 1 Ribosome 1 0.500231643921124 1 0.999536712157752 hm5C_site_12837 DeepMRMD:1;iRNA_m5C:0.999536712157752 12838 chr14 59970589 59970589 1 + G A rs367737327 59970605 + 59970585 59970625 41 TTCTGGTCAGAAAGAAAAGACTTATTGTTCTCTTCAGCCAC TTCTAGTCAGAAAGAAAAGACTTATTGTTCTCTTCAGCCAC < 41bp 1 0.187937757260349 1 0.0508999824523926 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control JKAMP ENSG00000050130 CDS Human protein_coding chr14:59970605 chr14:59970589 synonymous SNV . 0 5 hm5C_associated_SNPs_10557 0 0 0 0 1 Ribosome 1 0.500231640530574 1 0.999536718938852 hm5C_site_12838 DeepMRMD:1;iRNA_m5C:0.999536718938852 12839 chr14 60592491 60592491 1 + A C rs145320435 60592489 + 60592469 60592509 41 TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAT TGATGAAAAGTGGAAGGAAGCACTTTTACAAGAAAAGCCAT < 41bp 1 0.348595551509296 1 0.11495178937912 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60592489 chr14:60592491 nonsynonymous SNV 0.928 1 23 hm5C_associated_SNPs_10559 0 0 1 2 1 Endoplasmic reticulum 1 0.500231644033762 1 0.999536711932475 hm5C_site_12839 DeepMRMD:1;iRNA_m5C:0.999536711932475 12840 chr14 61201634 61201634 1 + C T rs4151150 61201633 + 61201613 61201653 41 CACCAAATATCGGAACCCCTCCTTGAAGCTGATGGTGAATG CACCAAATATCGGAACCCCTCTTTGAAGCTGATGGTGAATG < 41bp 1 0.283519893866961 1 0.135496228933334 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61201633 chr14:61201634 synonymous SNV . 0 22 hm5C_associated_SNPs_10560 0 0 1 0 1 Ribosome 1 0.50023216566427 1 0.99953566867146 hm5C_site_12840 DeepMRMD:1;iRNA_m5C:0.99953566867146 12841 chr14 61275053 61275053 1 + G C rs148083759 61275055 + 61275035 61275075 41 TAATGCAGTTTTCAACTTGACCAACAATGTGGATTTGGACA TAATGCAGTTTTCAACTTCACCAACAATGTGGATTTGGACA < 41bp 1 0.074333585822019 1 0.0566551089286804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61275055 chr14:61275053 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_10561 0 0 1 0 2 Ribosome 1 0.500210111673525 1 0.999579776652951 hm5C_site_12841 DeepMRMD:1;iRNA_m5C:0.999579776652951 12842 chr14 61346449 61346449 1 + G A rs188250258 61346465 + 61346445 61346485 41 CACTGGCACCTATTCACAAGCTTGAAGAAGCTCTGTATGAA CACTAGCACCTATTCACAAGCTTGAAGAAGCTCTGTATGAA < 41bp 1 0.587469045624825 1 0.68172687292099 experiment 0.825061908750349 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61346465 chr14:61346449 synonymous SNV . 0 5 hm5C_associated_SNPs_10563 0 0 1 0 0 Ribosome 1 0.500231414415481 0.63654625415802 0.999537171169037 hm5C_site_12842 DeepMRMD:0.63654625415802;iRNA_m5C:0.999537171169037 12843 chr14 62203623 62203623 1 + G A rs142179458 62203638 + 62203618 62203658 41 AGCACGACTTGATTTTCTCCCTTCAACAAACAGAATGTGTC AGCACAACTTGATTTTCTCCCTTCAACAAACAGAATGTGTC < 41bp 1 0.323200944170102 1 0.696730971336365 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout HIF1A ENSG00000100644 CDS Human protein_coding chr14:62203638 chr14:62203623 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_10564 0 0 1 0 1 Cytosol 1 0.500231640990117 0.60653805732727 0.999536718019766 hm5C_site_12843 DeepMRMD:0.60653805732727;iRNA_m5C:0.999536718019766 12844 chr14 64676751 64676751 1 + C G rs36215895 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACAGG < 41bp 1 0.59048480797872 1 0.960736751556396 experiment 0.81903038404256 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676751 nonsynonymous SNV 0.986 0 40 hm5C_associated_SNPs_10566 0 0 0 0 2 Nucleus 1 0.500231541782779 0.0785264968872079 0.999536916434442 hm5C_site_12844 DeepMRMD:0.0785264968872079;iRNA_m5C:0.999536916434442 12845 chr14 64687305 64687305 1 + G A rs34820571 64687313 + 64687293 64687333 41 GCAGCACAGGGCGCAGTGGACAGCTGGAGAGGGGGCTTACG GCAGCACAGGGCACAGTGGACAGCTGGAGAGGGGGCTTACG < 41bp 1 0.299587016301069 1 0.511377155780792 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64687313 chr14:64687305 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_10567 2 0 1 0 1 Nucleus 1 0.500231643919899 0.977245688438416 0.999536712160201 hm5C_site_12845 DeepMRMD:0.977245688438416;iRNA_m5C:0.999536712160201 not specified not specified 12846 chr14 64687327 64687327 1 + G C rs140676416 64687313 + 64687293 64687333 41 GCAGCACAGGGCGCAGTGGACAGCTGGAGAGGGGGCTTACG GCAGCACAGGGCGCAGTGGACAGCTGGAGAGGGGCCTTACG < 41bp 1 0.363147068539049 1 0.649260640144348 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64687313 chr14:64687327 nonsynonymous SNV 0.736 0 35 hm5C_associated_SNPs_10568 0 0 0 0 1 Nucleus 1 0.500231644514867 0.701478719711304 0.999536710970266 hm5C_site_12846 DeepMRMD:0.701478719711304;iRNA_m5C:0.999536710970266 12847 chr14 64690002 64690002 1 + T C rs77065534 64690010 + 64689990 64690030 41 TGGAGAAGACTGTATTGAAGCTGAAGAAAAGGTGCATGTTA TGGAGAAGACTGCATTGAAGCTGAAGAAAAGGTGCATGTTA < 41bp 1 0.29169210973563 1 0.429901331663132 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64690010 chr14:64690002 synonymous SNV . 0 13 hm5C_associated_SNPs_10569 1 0 1 0 2 Nucleus 1 0.500231614835837 1 0.999536770328326 hm5C_site_12847 DeepMRMD:1;iRNA_m5C:0.999536770328326 Emery-Dreifuss muscular dystrophy Emery-Dreifuss muscular dystrophy 12848 chr14 64692544 64692544 1 + G A rs79269713 64692531 + 64692511 64692551 41 GTTTCCTGAAGAGCCAAGCACTTTGTGAATTCTGGTTTGTT GTTTCCTGAAGAGCCAAGCACTTTGTGAATTCTAGTTTGTT < 41bp 1 0.0705876071926535 1 0.0339835584163666 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNE2 ENSG00000054654 UTR3 Human protein_coding chr14:64692531 chr14:64692544 . . 0 34 hm5C_associated_SNPs_10570 0 0 1 1 0 Nucleus 1 0.50023138136981 1 0.999537237260381 hm5C_site_12848 DeepMRMD:1;iRNA_m5C:0.999537237260381 12849 chr14 65209909 65209909 1 + G A rs17180132 65209911 + 65209891 65209931 41 ACCTTCAGCTGGCCCGACGTCCGTGAGCTCTGCTCCAAGTA ACCTTCAGCTGGCCCGACATCCGTGAGCTCTGCTCCAAGTA < 41bp 1 0.315441050814909 1 0.302224040031433 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65209911 chr14:65209909 nonsynonymous SNV 0.509 4 19 hm5C_associated_SNPs_10571 0 0 1 0 0 Nucleus 1 0.500231762253375 1 0.99953647549325 hm5C_site_12849 DeepMRMD:1;iRNA_m5C:0.99953647549325 12850 chr14 67786979 67786979 1 + G A rs145470385 67786966 + 67786946 67786986 41 GATTATGACAACGAGGAGATCTTAACCTATGAGGAAATGTC GATTATGACAACGAGGAGATCTTAACCTATGAGAAAATGTC < 41bp 1 0.176829731541721 1 0.154739439487457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MPP5 ENSG00000072415 CDS Human protein_coding chr14:67786966 chr14:67786979 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_10572 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12850 DeepMRMD:1;iRNA_m5C:0.999536712157815 12851 chr14 70178695 70178695 1 + C G rs564228706 70178684 + 70178664 70178704 41 GCTGAGATGCCATGGAGTGCCCATCTGGTCACTGGCAGTCT GCTGAGATGCCATGGAGTGCCCATCTGGTCAGTGGCAGTCT < 41bp 1 0.162219524916227 1 0.0726319253444672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SUSD6 ENSG00000100647 UTR3 Human protein_coding chr14:70178684 chr14:70178695 . . 0 32 hm5C_associated_SNPs_10574 0 0 0 0 0 Endoplasmic reticulum 1 0.49950316535436 1 1 hm5C_site_12851 DeepMRMD:1;iRNA_m5C:1 12852 chr14 70234042 70234042 1 + G A rs370707807 70234025 + 70234005 70234045 41 GGATCGAGGCTTCTTCATGGCCGCTCAGATCGTGAGCGGCC GGATCGAGGCTTCTTCATGGCCGCTCAGATCGTGAGCAGCC < 41bp 1 0.1987052445664 1 0.047804981470108 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70234025 chr14:70234042 . . 0 38 hm5C_associated_SNPs_10576 0 0 1 0 1 unknown 1 0.500231643899043 1 0.999536712201913 hm5C_site_12852 DeepMRMD:1;iRNA_m5C:0.999536712201913 12853 chr14 70234042 70234042 1 + G A rs370707807 70234026 + 70234006 70234046 41 GATCGAGGCTTCTTCATGGCCGCTCAGATCGTGAGCGGCCG GATCGAGGCTTCTTCATGGCCGCTCAGATCGTGAGCAGCCG < 41bp 1 0.208962166149948 1 0.137945294380188 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70234026 chr14:70234042 . . 0 37 hm5C_associated_SNPs_10577 0 0 1 0 1 unknown 1 0.500231644777565 1 0.99953671044487 hm5C_site_12853 DeepMRMD:1;iRNA_m5C:0.99953671044487 12854 chr14 70234042 70234042 1 + G A rs370707807 70234028 + 70234008 70234048 41 TCGAGGCTTCTTCATGGCCGCTCAGATCGTGAGCGGCCGGG TCGAGGCTTCTTCATGGCCGCTCAGATCGTGAGCAGCCGGG < 41bp 1 0.300358863163501 1 0.176522433757782 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70234028 chr14:70234042 . . 0 35 hm5C_associated_SNPs_10578 0 0 1 0 1 unknown 1 0.500231646137529 1 0.999536707724942 hm5C_site_12854 DeepMRMD:1;iRNA_m5C:0.999536707724942 12855 chr14 70234042 70234042 1 + G A rs370707807 70234030 + 70234010 70234050 41 GAGGCTTCTTCATGGCCGCTCAGATCGTGAGCGGCCGGGGC GAGGCTTCTTCATGGCCGCTCAGATCGTGAGCAGCCGGGGC < 41bp 1 0.22881067735725 1 0.37484335899353 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70234030 chr14:70234042 . . 0 33 hm5C_associated_SNPs_10579 0 0 1 0 1 unknown 1 0.5002316909055 1 0.999536618189001 hm5C_site_12855 DeepMRMD:1;iRNA_m5C:0.999536618189001 12856 chr14 70234042 70234042 1 + G A rs370707807 70234041 + 70234021 70234061 41 ATGGCCGCTCAGATCGTGAGCGGCCGGGGCTGCTCTCTTTG ATGGCCGCTCAGATCGTGAGCAGCCGGGGCTGCTCTCTTTG < 41bp 1 0.38783503085093 1 0.0404787361621857 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70234041 chr14:70234042 . . 0 22 hm5C_associated_SNPs_10580 0 0 1 0 1 unknown 1 0.500231642342857 1 0.999536715314287 hm5C_site_12856 DeepMRMD:1;iRNA_m5C:0.999536715314287 12857 chr14 70234042 70234042 1 + G A rs370707807 70234044 + 70234024 70234064 41 GCCGCTCAGATCGTGAGCGGCCGGGGCTGCTCTCTTTGCGG GCCGCTCAGATCGTGAGCAGCCGGGGCTGCTCTCTTTGCGG < 41bp 1 0.607174800697769 1 0.897131204605103 experiment 0.785650398604463 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70234044 chr14:70234042 . . 0 19 hm5C_associated_SNPs_10581 0 0 1 0 1 unknown 1 0.500231642119522 0.205737590789794 0.999536715760955 hm5C_site_12857 DeepMRMD:0.205737590789794;iRNA_m5C:0.999536715760955 12858 chr14 71444593 71444593 1 + C T rs113064017 71444573 + 71444553 71444593 41 CTTCCCAAGGGGACAGACCACCTGGGAACACTGCAGAAAAC CTTCCCAAGGGGACAGACCACCTGGGAACACTGCAGAAAAT < 41bp 1 0.194522279023456 1 0.435135900974274 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71444573 chr14:71444593 synonymous SNV . 0 41 hm5C_associated_SNPs_10582 0 0 1 0 0 Endoplasmic reticulum 1 0.500231640388009 1 0.999536719223982 hm5C_site_12858 DeepMRMD:1;iRNA_m5C:0.999536719223982 12859 chr14 71444593 71444593 1 + C T rs113064017 71444574 + 71444554 71444594 41 TTCCCAAGGGGACAGACCACCTGGGAACACTGCAGAAAACA TTCCCAAGGGGACAGACCACCTGGGAACACTGCAGAAAATA < 41bp 1 0.551046513314799 1 0.643979549407959 experiment 0.897906973370403 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71444574 chr14:71444593 synonymous SNV . 0 40 hm5C_associated_SNPs_10583 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.712040901184082 0.999536712157815 hm5C_site_12859 DeepMRMD:0.712040901184082;iRNA_m5C:0.999536712157815 12860 chr14 73421159 73421159 1 + A G rs117449182 73421177 + 73421157 73421197 41 ACAGTGATGTCTTGGCCCAGCAGTTTGCTCTCATGGTTGGT ACGGTGATGTCTTGGCCCAGCAGTTTGCTCTCATGGTTGGT < 41bp 1 0.166095357469385 1 0.114077687263489 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73421177 chr14:73421159 nonsynonymous SNV 0.874 3 3 hm5C_associated_SNPs_10584 0 0 0 0 2 chromatin 1 0.500231663343424 1 0.999536673313151 hm5C_site_12860 DeepMRMD:1;iRNA_m5C:0.999536673313151 12861 chr14 73421186 73421186 1 + C T rs17856583 73421177 + 73421157 73421197 41 ACAGTGATGTCTTGGCCCAGCAGTTTGCTCTCATGGTTGGT ACAGTGATGTCTTGGCCCAGCAGTTTGCTTTCATGGTTGGT < 41bp 1 0.131902645216649 1 0.20126023888588 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73421177 chr14:73421186 nonsynonymous SNV 0.233 0 30 hm5C_associated_SNPs_10585 0 0 0 0 2 chromatin 1 0.500399058235195 1 0.999201883529609 hm5C_site_12861 DeepMRMD:1;iRNA_m5C:0.999201883529609 12862 chr14 73429721 73429721 1 + A G rs191124234 73429702 + 73429682 73429722 41 GGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAG GGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGGG < 41bp 1 0.142942526621963 1 0.121696174144745 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DCAF4;ZFYVE1 ENSG00000239544 downstream Human processed_pseudogene chr14:73429702 chr14:73429721 . . 0 40 hm5C_associated_SNPs_10586 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12862 DeepMRMD:1;iRNA_m5C:0.999536712157815 12863 chr14 73429721 73429721 1 + A G rs191124234 73429712 + 73429692 73429732 41 AGGGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCGGTT AGGGGTAGAGCATTTGACTGCAGATCAAGGGGTCCCCGGTT < 41bp 1 0.448828541567699 1 0.784629702568054 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DCAF4;ZFYVE1 ENSG00000239544 downstream Human processed_pseudogene chr14:73429712 chr14:73429721 . . 0 30 hm5C_associated_SNPs_10587 0 0 1 0 0 unknown 1 0.500231643921078 0.430740594863892 0.999536712157844 hm5C_site_12863 DeepMRMD:0.430740594863892;iRNA_m5C:0.999536712157844 12864 chr14 73429721 73429721 1 + A G rs191124234 73429726 + 73429706 73429746 41 TGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCC TGACTGCAGATCAAGGGGTCCCCGGTTCAAATCCGGGTGCC < 41bp 1 0.426415168620757 1 0.123189955949783 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target DCAF4;ZFYVE1 ENSG00000239544 downstream Human processed_pseudogene chr14:73429726 chr14:73429721 . . 0 16 hm5C_associated_SNPs_10588 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12864 DeepMRMD:1;iRNA_m5C:0.999536712157815 12865 chr14 73429721 73429721 1 + A G rs191124234 73429733 + 73429713 73429753 41 AGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCTTCC AGATCAAGGGGTCCCCGGTTCAAATCCGGGTGCCCCCTTCC < 41bp 1 0.290763284045112 1 0.204787909984589 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target DCAF4;ZFYVE1 ENSG00000239544 downstream Human processed_pseudogene chr14:73429733 chr14:73429721 . . 0 9 hm5C_associated_SNPs_10589 0 0 1 0 0 unknown 1 0.500231643712465 1 0.99953671257507 hm5C_site_12865 DeepMRMD:1;iRNA_m5C:0.99953671257507 12866 chr14 73429736 73429736 1 + A G rs561490940 73429726 + 73429706 73429746 41 TGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCC TGACTGCAGATCAAGAGGTCCCCGGTTCAAGTCCGGGTGCC < 41bp 1 0.364692909691536 1 0.19769674539566 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target DCAF4;ZFYVE1 ENSG00000239544 downstream Human processed_pseudogene chr14:73429726 chr14:73429736 . . 0 31 hm5C_associated_SNPs_10590 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_12866 DeepMRMD:1;iRNA_m5C:0.999536712157816 12867 chr14 73429736 73429736 1 + A G rs561490940 73429733 + 73429713 73429753 41 AGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCTTCC AGATCAAGAGGTCCCCGGTTCAAGTCCGGGTGCCCCCTTCC < 41bp 1 0.479745624155564 1 0.218790650367737 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target DCAF4;ZFYVE1 ENSG00000239544 downstream Human processed_pseudogene chr14:73429733 chr14:73429736 . . 0 24 hm5C_associated_SNPs_10591 0 0 1 0 0 unknown 1 0.50023164392108 1 0.99953671215784 hm5C_site_12867 DeepMRMD:1;iRNA_m5C:0.99953671215784 12868 chr14 73429736 73429736 1 + A G rs561490940 73429745 + 73429725 73429765 41 CCCCGGTTCAAATCCGGGTGCCCCCTTCCCGGATGTTTTCT CCCCGGTTCAAGTCCGGGTGCCCCCTTCCCGGATGTTTTCT < 41bp 1 0.0507262955475306 1 0.0387912690639496 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF4;ZFYVE1 ENSG00000239544 downstream Human processed_pseudogene chr14:73429745 chr14:73429736 . . 0 12 hm5C_associated_SNPs_10592 0 0 1 0 0 unknown 1 0.500231643920902 1 0.999536712158197 hm5C_site_12868 DeepMRMD:1;iRNA_m5C:0.999536712158197 12869 chr14 73429736 73429736 1 + A G rs561490940 73429748 + 73429728 73429768 41 CGGTTCAAATCCGGGTGCCCCCTTCCCGGATGTTTTCTCAT CGGTTCAAGTCCGGGTGCCCCCTTCCCGGATGTTTTCTCAT < 41bp 1 0.01197348070329 1 0.0575312376022339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF4;ZFYVE1 ENSG00000239544 downstream Human processed_pseudogene chr14:73429748 chr14:73429736 . . 0 9 hm5C_associated_SNPs_10593 0 0 1 0 0 unknown 1 0.500231627838576 1 0.999536744322848 hm5C_site_12869 DeepMRMD:1;iRNA_m5C:0.999536744322848 12870 chr14 73577709 73577709 1 + C T rs150992885 73577703 + 73577683 73577723 41 CTGAAACCTACTCTGAGGCCCATCAGCTCTGCTCCATCTGT CTGAAACCTACTCTGAGGCCCATCAGTTCTGCTCCATCTGT < 41bp 1 0.396832000091653 1 0.102489769458771 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73577703 chr14:73577709 synonymous SNV . 0 27 hm5C_associated_SNPs_10594 0 0 1 0 0 Nucleus 1 0.500231409274366 1 0.999537181451269 hm5C_site_12870 DeepMRMD:1;iRNA_m5C:0.999537181451269 12871 chr14 73603190 73603190 1 + G A rs199689757 73603203 + 73603183 73603223 41 ACAGGCAGCTCCGGGGTCCGCGGTTTCACATCGGAAACAAA ACAGGCAACTCCGGGGTCCGCGGTTTCACATCGGAAACAAA < 41bp 1 0.394333051352847 1 0.247153162956238 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSEN1 ENSG00000080815 UTR5 Human protein_coding chr14:73603203 chr14:73603190 . . 0 8 hm5C_associated_SNPs_10595 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_12871 DeepMRMD:1;iRNA_m5C:0.999536712157814 12872 chr14 73637512 73637512 1 + A G rs200824179 73637529 + 73637509 73637549 41 ACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTT ACAGTAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTT < 41bp 1 0.674167786139577 1 0.319849252700806 experiment 0.651664427720847 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637529 chr14:73637512 nonsynonymous SNV 0.463 1 4 hm5C_associated_SNPs_10596 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12872 DeepMRMD:1;iRNA_m5C:0.999536712157815 12873 chr14 73637512 73637512 1 + A G rs200824179 73637531 + 73637511 73637551 41 AATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG AGTAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG < 41bp 1 0.665393670151478 1 0.243122190237045 experiment 0.669212659697045 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637531 chr14:73637512 nonsynonymous SNV 0.463 1 2 hm5C_associated_SNPs_10597 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12873 DeepMRMD:1;iRNA_m5C:0.999536712157815 12874 chr14 73958812 73958812 1 + T A rs3813563 73958826 + 73958806 73958846 41 CCCGAGTCCCAACCGAGGAACTGGCTCTGACATCCAGCCCC CCCGAGACCCAACCGAGGAACTGGCTCTGACATCCAGCCCC < 41bp 1 0.521922981715228 1 0.22677755355835 experiment 0.956154036569543 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RIOX1 ENSG00000170468;ENSG00000255242 ncRNA_exonic Human other chr14:73958826 chr14:73958812 . 0.499 0 7 hm5C_associated_SNPs_10598 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12874 DeepMRMD:1;iRNA_m5C:0.999536712157815 12875 chr14 74424938 74424938 1 + T C rs3180946 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCACATTAC < 41bp 1 0.460404331719515 1 0.155064880847931 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424938 synonymous SNV . 0 36 hm5C_associated_SNPs_10599 1 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12875 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 12876 chr14 75202373 75202373 1 + A G rs77394285 75202392 + 75202372 75202412 41 AAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTA AGGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTA < 41bp 1 0.182667364151788 1 0.0802201330661774 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FCF1 ENSG00000119616 UTR3 Human protein_coding chr14:75202392 chr14:75202373 . . 0 2 hm5C_associated_SNPs_10600 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_12876 DeepMRMD:1;iRNA_m5C:0.999536712157815 12877 chr14 75202373 75202373 1 + A G rs77394285 75202393 + 75202373 75202413 41 AGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTAC GGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTAC < 41bp 1 0.593146471063242 1 0.249467760324478 experiment 0.813707057873516 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control FCF1 ENSG00000119616 UTR3 Human protein_coding chr14:75202393 chr14:75202373 . . 0 1 hm5C_associated_SNPs_10601 0 0 1 0 0 Nucleus 1 0.500231582740259 1 0.999536834519482 hm5C_site_12877 DeepMRMD:1;iRNA_m5C:0.999536834519482 12878 chr14 75247245 75247245 1 + A G rs74566256 75247246 + 75247226 75247266 41 CTCAGTTACAGCAGATTCTACAACAGTATCAGCAGATTATA CTCAGTTACAGCAGATTCTGCAACAGTATCAGCAGATTATA < 41bp 1 0.39776916346941 1 0.0401936769485474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75247246 chr14:75247245 synonymous SNV . 0 20 hm5C_associated_SNPs_10604 0 0 1 0 0 Cytosol 1 0.499907880116389 1 1 hm5C_site_12878 DeepMRMD:1;iRNA_m5C:1 12879 chr14 75359607 75359607 1 + G A rs201721137 75359614 + 75359594 75359634 41 AACCTACAGCAGCGGCAGTTCCTCCCCCTGCAGCACCCATA AACCTACAGCAGCAGCAGTTCCTCCCCCTGCAGCACCCATA < 41bp 1 0.10134767706142 1 0.0666942596435547 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359614 chr14:75359607 synonymous SNV . 0 14 hm5C_associated_SNPs_10605 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12879 DeepMRMD:1;iRNA_m5C:0.999536712157815 12880 chr14 75359670 75359670 1 + G A rs2230237 75359687 + 75359667 75359707 41 ACAGCCTCCTTCTGGCAAACCTGGTAGGCTTCCAACTCCCA ACAACCTCCTTCTGGCAAACCTGGTAGGCTTCCAACTCCCA < 41bp 1 0.694365416993599 1 0.0704642534255981 experiment 0.611269166012802 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359687 chr14:75359670 synonymous SNV . 0 4 hm5C_associated_SNPs_10606 0 0 1 1 1 Ribosome 1 0.500231641969598 1 0.999536716060803 hm5C_site_12880 DeepMRMD:1;iRNA_m5C:0.999536716060803 12881 chr14 75369890 75369890 1 + C G rs141856572 75369877 + 75369857 75369897 41 AGCACATCATGGCAGTGGGACCAAGCGTGGTCCCGAGGAAG AGCACATCATGGCAGTGGGACCAAGCGTGGTCCGGAGGAAG < 41bp 1 0.210999752096462 1 0.209879040718079 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DLST ENSG00000119689 UTR3 Human protein_coding chr14:75369877 chr14:75369890 . . 0 34 hm5C_associated_SNPs_10607 0 0 1 0 0 Ribosome 1 0.500231646655109 1 0.999536706689781 hm5C_site_12881 DeepMRMD:1;iRNA_m5C:0.999536706689781 12882 chr14 75746627 75746627 1 + G A rs76195634 75746611 + 75746591 75746631 41 GGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCA GGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACAGTCA < 41bp 1 0.056092189853388 1 0.0695299506187439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746611 chr14:75746627 nonsynonymous SNV 0.998 0 37 hm5C_associated_SNPs_10610 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_12882 DeepMRMD:1;iRNA_m5C:0.999536712157815 12883 chr14 75746627 75746627 1 + G A rs76195634 75746612 + 75746592 75746632 41 GACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCAC GACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACAGTCAC < 41bp 1 0.240566196209527 1 0.0634810328483582 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746612 chr14:75746627 nonsynonymous SNV 0.998 0 36 hm5C_associated_SNPs_10611 0 0 0 0 1 Endoplasmic reticulum 1 0.500230520866951 1 0.999538958266098 hm5C_site_12883 DeepMRMD:1;iRNA_m5C:0.999538958266098 12884 chr14 75746627 75746627 1 + G A rs76195634 75746615 + 75746595 75746635 41 CTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGC CTGGCCGTCTCCAGTGCCAACTTCATTCCCACAGTCACTGC < 41bp 1 0.550686930859563 1 0.329867601394653 experiment 0.898626138280874 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746615 chr14:75746627 nonsynonymous SNV 0.998 0 33 hm5C_associated_SNPs_10612 0 0 0 0 1 Endoplasmic reticulum 1 0.500231801626308 1 0.999536396747384 hm5C_site_12884 DeepMRMD:1;iRNA_m5C:0.999536396747384 12885 chr14 75746627 75746627 1 + G A rs76195634 75746618 + 75746598 75746638 41 GCCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGCCAT GCCGTCTCCAGTGCCAACTTCATTCCCACAGTCACTGCCAT < 41bp 1 0.0334363644046969 1 0.647949576377869 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746618 chr14:75746627 nonsynonymous SNV 0.998 0 30 hm5C_associated_SNPs_10613 0 0 0 0 1 Endoplasmic reticulum 1 0.500425031670691 0.704100847244262 0.999149936658618 hm5C_site_12885 DeepMRMD:0.704100847244262;iRNA_m5C:0.999149936658618 12886 chr14 75936049 75936049 1 + G A rs145604845 75936062 + 75936042 75936082 41 AGGAGCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTG AGGAGCTAAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTG < 41bp 1 0.635120476748931 1 0.48528864979744 experiment 0.729759046502139 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936062 chr14:75936049 synonymous SNV . 0 8 hm5C_associated_SNPs_10615 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12886 DeepMRMD:1;iRNA_m5C:0.999536712157815 12887 chr14 75936049 75936049 1 + G A rs145604845 75936065 + 75936045 75936085 41 AGCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTGAAC AGCTAAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTGAAC < 41bp 1 0.373246418511425 1 0.739110827445984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936065 chr14:75936049 synonymous SNV . 0 5 hm5C_associated_SNPs_10616 0 0 0 0 1 Ribosome 1 0.500231644578738 0.521778345108032 0.999536710842524 hm5C_site_12887 DeepMRMD:0.521778345108032;iRNA_m5C:0.999536710842524 12888 chr14 75936736 75936736 1 + G A rs75240333 75936716 + 75936696 75936736 41 CACCTCGGTCCAGCGCGGCCCTGCCCAGGAGGCGGCAGCCG CACCTCGGTCCAGCGCGGCCCTGCCCAGGAGGCGGCAGCCA < 41bp 1 0.304782999873378 1 0.0218998193740845 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 UTR3 Human protein_coding chr14:75936716 chr14:75936736 . . 0 41 hm5C_associated_SNPs_10617 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12888 DeepMRMD:1;iRNA_m5C:0.999536712157815 12889 chr14 76618283 76618283 1 + G T rs561794953 76618282 + 76618262 76618302 41 GTCAGAGAGGGAAGCCCCGGCGGTGAGAGTCGGCCCAAAAA GTCAGAGAGGGAAGCCCCGGCTGTGAGAGTCGGCCCAAAAA < 41bp 1 0.689894866858333 1 0.25553223490715 experiment 0.620210266283334 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPATCH2L ENSG00000089916 UTR5 Human protein_coding chr14:76618282 chr14:76618283 . . 0 22 hm5C_associated_SNPs_10620 0 0 1 0 2 Nucleus 1 0.500231644331337 1 0.999536711337326 hm5C_site_12889 DeepMRMD:1;iRNA_m5C:0.999536711337326 12890 chr14 76638268 76638268 1 + T G rs144422821 76638267 + 76638247 76638287 41 TAATCTTCTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAG TAATCTTCTGCCCAAGTGGGCGCCTGATCATTGTTCTGAAG < 41bp 1 0.305587955474928 1 0.217246294021606 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76638267 chr14:76638268 synonymous SNV . 0 22 hm5C_associated_SNPs_10621 0 0 1 0 2 Nucleus 1 0.500231643924969 1 0.999536712150062 hm5C_site_12890 DeepMRMD:1;iRNA_m5C:0.999536712150062 12891 chr14 78183928 78183928 1 + A G rs17106262 78183914 + 78183894 78183934 41 AAGATTTTTGAGACTGCAGCCTATTAATAAAGTTAACATAA AAGATTTTTGAGACTGCAGCCTATTAATAAAGTTGACATAA < 41bp 1 0.170483763550284 1 0.0648556053638458 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLIRP ENSG00000119705 UTR3 Human protein_coding chr14:78183914 chr14:78183928 . . 0 35 hm5C_associated_SNPs_10622 0 0 1 0 2 Ribosome 1 0.500231656562053 1 0.999536686875893 hm5C_site_12891 DeepMRMD:1;iRNA_m5C:0.999536686875893 12892 chr14 89078640 89078640 1 + T C rs546453008 89078634 + 89078614 89078654 41 AGTGAATTTAGTTTGAAAAGCATGATTATACAGGCCTCTCA AGTGAATTTAGTTTGAAAAGCATGATCATACAGGCCTCTCA < 41bp 1 0.618577651409147 1 0.159761130809784 experiment 0.762844697181706 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H14 ENSG00000100722 UTR3 Human protein_coding chr14:89078634 chr14:89078640 . . 0 27 hm5C_associated_SNPs_10623 0 0 1 0 0 Nucleus 1 0.500231643971593 1 0.999536712056814 hm5C_site_12892 DeepMRMD:1;iRNA_m5C:0.999536712056814 12893 chr14 89291027 89291027 1 + G A rs7145692 89291047 + 89291027 89291067 41 GCCTTCGCTGGCCGCACCGGCAGCCATGAGCTCGGAGATGG ACCTTCGCTGGCCGCACCGGCAGCCATGAGCTCGGAGATGG < 41bp 1 0.577361516283031 1 0.104230642318726 experiment 0.845276967433938 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTC8 ENSG00000165533 UTR5 Human protein_coding chr14:89291047 chr14:89291027 . . 0 1 hm5C_associated_SNPs_10624 3 0 1 0 0 Nucleus 1 0.50023164391016 1 0.999536712179679 hm5C_site_12893 DeepMRMD:1;iRNA_m5C:0.999536712179679 not specified not specified 12894 chr14 90429743 90429743 1 + G A rs35114462 90429750 + 90429730 90429770 41 GCAGTGATGATGAGCTGCAACCAGAAATGCCGCAGAAGCAG GCAGTGATGATGAACTGCAACCAGAAATGCCGCAGAAGCAG < 41bp 1 0.663144179848942 1 0.40285724401474 experiment 0.673711640302117 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90429750 chr14:90429743 synonymous SNV . 0 14 hm5C_associated_SNPs_10625 0 0 1 0 0 chromatin 1 0.500231654719954 1 0.999536690560092 hm5C_site_12894 DeepMRMD:1;iRNA_m5C:0.999536690560092 12895 chr14 90429743 90429743 1 + G A rs35114462 90429751 + 90429731 90429771 41 CAGTGATGATGAGCTGCAACCAGAAATGCCGCAGAAGCAGG CAGTGATGATGAACTGCAACCAGAAATGCCGCAGAAGCAGG < 41bp 1 0.697344956296872 1 0.886076748371124 experiment 0.605310087406256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90429751 chr14:90429743 synonymous SNV . 0 13 hm5C_associated_SNPs_10626 0 0 1 0 0 chromatin 1 0.500231015781212 0.227846503257752 0.999537968437575 hm5C_site_12895 DeepMRMD:0.227846503257752;iRNA_m5C:0.999537968437575 12896 chr14 90429749 90429749 1 + A G rs3825663 90429750 + 90429730 90429770 41 GCAGTGATGATGAGCTGCAACCAGAAATGCCGCAGAAGCAG GCAGTGATGATGAGCTGCAGCCAGAAATGCCGCAGAAGCAG < 41bp 1 0.686901189586981 1 0.433761835098267 experiment 0.626197620826037 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90429750 chr14:90429749 synonymous SNV . 0 20 hm5C_associated_SNPs_10627 1 0 1 0 0 chromatin 1 0.500231674009063 1 0.999536651981874 hm5C_site_12896 DeepMRMD:1;iRNA_m5C:0.999536651981874 Spinocerebellar Ataxia, Recessive Spinocerebellar Ataxia, Recessive 12897 chr14 90429760 90429760 1 + C G rs35455108 90429750 + 90429730 90429770 41 GCAGTGATGATGAGCTGCAACCAGAAATGCCGCAGAAGCAG GCAGTGATGATGAGCTGCAACCAGAAATGCGGCAGAAGCAG < 41bp 1 0.698629306950074 1 0.531387269496918 experiment 0.602741386099853 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90429750 chr14:90429760 nonsynonymous SNV 0.000 0 31 hm5C_associated_SNPs_10629 0 0 1 0 0 chromatin 1 0.500233836134907 0.937225461006164 0.999532327730185 hm5C_site_12897 DeepMRMD:0.937225461006164;iRNA_m5C:0.999532327730185 12898 chr14 90433762 90433762 1 + T C rs148474327 90433764 + 90433744 90433784 41 AAACAGTATCCACCAGAGTTCAGGTGAGTTCCTCAGGGTGA AAACAGTATCCACCAGAGCTCAGGTGAGTTCCTCAGGGTGA < 41bp 1 0.617412904782201 1 0.703882336616516 experiment 0.765174190435599 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90433764 chr14:90433762 nonsynonymous SNV 0.985 2 19 hm5C_associated_SNPs_10631 0 0 1 1 2 chromatin 1 0.500231644203273 0.592235326766968 0.999536711593453 hm5C_site_12898 DeepMRMD:0.592235326766968;iRNA_m5C:0.999536711593453 12899 chr14 92630326 92630326 1 + G A rs1126949 92630331 + 92630311 92630351 41 TGATCCGCCCGCCTGGGCCTCCCAAAGTGCTGGGATTACAG TGATCCGCCCGCCTGAGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.536950020012993 1 0.0975462794303894 experiment 0.926099959974015 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPSF2 ENSG00000165934 UTR3 Human protein_coding chr14:92630331 chr14:92630326 . . 0 16 hm5C_associated_SNPs_10632 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12899 DeepMRMD:1;iRNA_m5C:0.999536712157815 12900 chr14 92630326 92630326 1 + G A rs1126949 92630332 + 92630312 92630352 41 GATCCGCCCGCCTGGGCCTCCCAAAGTGCTGGGATTACAGG GATCCGCCCGCCTGAGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.671910960317476 1 0.192448526620865 experiment 0.656178079365048 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPSF2 ENSG00000165934 UTR3 Human protein_coding chr14:92630332 chr14:92630326 . . 0 15 hm5C_associated_SNPs_10633 0 0 1 0 0 Ribosome 1 0.500231643921097 1 0.999536712157805 hm5C_site_12900 DeepMRMD:1;iRNA_m5C:0.999536712157805 12901 chr14 93043720 93043720 1 + C T rs144699416 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTCGCTGGGACAGCAGCTCGAAGCAGCTGGT < 41bp 1 0.490088977297187 1 0.501998066902161 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043720 nonsynonymous SNV 0.008 3 16 hm5C_associated_SNPs_10635 0 0 0 0 1 cytosol 1 0.500231640994544 0.996003866195678 0.999536718010913 hm5C_site_12901 DeepMRMD:0.996003866195678;iRNA_m5C:0.999536718010913 12902 chr14 93277899 93277899 1 + G A rs142273431 93277898 + 93277878 93277918 41 TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCCTTAA TATAAAAATTTGTCACAGAGCAAGTTTGCTGCACGCCTTAA < 41bp 1 0.495476383783671 1 0.145311444997787 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93277898 chr14:93277899 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_10636 0 0 0 0 1 chromatin 1 0.500231643933361 1 0.999536712133277 hm5C_site_12902 DeepMRMD:1;iRNA_m5C:0.999536712133277 12903 chr14 93277918 93277918 1 + A G rs35865539 93277898 + 93277878 93277918 41 TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCCTTAA TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCCTTAG < 41bp 1 0.565480538640083 1 0.223114848136902 experiment 0.869038922719835 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93277898 chr14:93277918 nonsynonymous SNV 0.999 0 41 hm5C_associated_SNPs_10637 0 0 1 0 1 chromatin 1 0.50023164423339 1 0.999536711533221 hm5C_site_12903 DeepMRMD:1;iRNA_m5C:0.999536711533221 12904 chr14 93299522 93299522 1 + A G rs75743171 93299518 + 93299498 93299538 41 AGTCTGAGTTAGAAAATCGACTCCATCAGCTAACAGAGACT AGTCTGAGTTAGAAAATCGACTCCGTCAGCTAACAGAGACT < 41bp 1 0.557630097798591 1 0.335511952638626 experiment 0.884739804402817 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93299518 chr14:93299522 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_10638 0 0 1 0 0 chromatin 1 0.5002316439211 1 0.999536712157801 hm5C_site_12904 DeepMRMD:1;iRNA_m5C:0.999536712157801 12905 chr14 95059381 95059381 1 + A G rs7070 95059396 + 95059376 95059416 41 AGAGTATCAGTTGCAGGTGCCAATGACTAACTTTTTGAATT AGAGTGTCAGTTGCAGGTGCCAATGACTAACTTTTTGAATT < 41bp 1 0.251075492945406 1 0.177164703607559 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINA5 ENSG00000188488 UTR3 Human protein_coding chr14:95059396 chr14:95059381 . . 0 6 hm5C_associated_SNPs_10641 0 0 1 3 0 cytosol 1 0.500231525358159 1 0.999536949283682 hm5C_site_12905 DeepMRMD:1;iRNA_m5C:0.999536949283682 12906 chr14 95078780 95078780 1 + G A rs557831303 95078782 + 95078762 95078802 41 CTACATCCAGCTCCCTGAGGCAGGTAATCCATGATGTTTTA CTACATCCAGCTCCCTGAAGCAGGTAATCCATGATGTTTTA < 41bp 1 0.395601302428612 1 0.613594770431519 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control SERPINA3 ENSG00000196136 CDS Human protein_coding chr14:95078782 chr14:95078780 synonymous SNV . 0 19 hm5C_associated_SNPs_10642 0 0 1 1 1 cytosol 1 0.500231644068711 0.772810459136962 0.999536711862578 hm5C_site_12906 DeepMRMD:0.772810459136962;iRNA_m5C:0.999536711862578 12907 chr14 96553006 96553006 1 + G A rs551383899 96553020 + 96553000 96553040 41 GCTATGGATTGCCATCATAGCTACGCTGGGGAACATCGTGG GCTATGAATTGCCATCATAGCTACGCTGGGGAACATCGTGG < 41bp 1 0.595995539322145 1 0.150876253843307 experiment 0.80800892135571 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C14orf132 ENSG00000227051 UTR5 Human protein_coding chr14:96553020 chr14:96553006 . . 0 7 hm5C_associated_SNPs_10643 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12907 DeepMRMD:1;iRNA_m5C:0.999536712157815 12908 chr14 96708793 96708793 1 + G A rs201676732 96708811 + 96708791 96708831 41 ACGTAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG ACATAACTGGGATATGTTTACTATAAGGAAAAGACACTGAG < 41bp 1 0.382702394483616 1 0.136828243732452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BDKRB2 ENSG00000168398 UTR3 Human protein_coding chr14:96708811 chr14:96708793 . . 0 3 hm5C_associated_SNPs_10644 0 0 0 6 0 exosome 1 0.500231643954517 1 0.999536712090967 hm5C_site_12908 DeepMRMD:1;iRNA_m5C:0.999536712090967 12909 chr14 97018864 97018864 1 + C G rs35861551 97018858 + 97018838 97018878 41 TTGACAGCTCTCAATGACAGCAGCCTCGACTTGTCTATGGA TTGACAGCTCTCAATGACAGCAGCCTGGACTTGTCTATGGA < 41bp 1 0.26481315546889 1 0.169214189052582 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97018858 chr14:97018864 synonymous SNV . 0 27 hm5C_associated_SNPs_10645 0 0 1 0 2 Ribosome 1 0.500231641779165 1 0.999536716441671 hm5C_site_12909 DeepMRMD:1;iRNA_m5C:0.999536716441671 12910 chr14 99947777 99947777 1 + C G rs149437057 99947768 + 99947748 99947788 41 CATTCCATATACAAGATGGCCGCAGTCGGCAAGGAGAGACG CATTCCATATACAAGATGGCCGCAGTCGGGAAGGAGAGACG < 41bp 1 0.520697807869971 1 0.405896693468094 experiment 0.958604384260059 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNK ENSG00000090061 UTR5 Human protein_coding chr14:99947768 chr14:99947777 . . 0 30 hm5C_associated_SNPs_10646 0 0 1 0 1 chromatin 1 0.500231644401356 1 0.999536711197287 hm5C_site_12910 DeepMRMD:1;iRNA_m5C:0.999536711197287 12911 chr14 99947777 99947777 1 + C G rs149437057 99947770 + 99947750 99947790 41 TTCCATATACAAGATGGCCGCAGTCGGCAAGGAGAGACGTC TTCCATATACAAGATGGCCGCAGTCGGGAAGGAGAGACGTC < 41bp 1 0.218488701390326 1 0.199762254953384 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNK ENSG00000090061 UTR5 Human protein_coding chr14:99947770 chr14:99947777 . . 0 28 hm5C_associated_SNPs_10647 0 0 1 0 1 chromatin 1 0.500230901699127 1 0.999538196601745 hm5C_site_12911 DeepMRMD:1;iRNA_m5C:0.999538196601745 12912 chr14 100563943 100563943 1 + G A rs3206354 100563942 + 100563922 100563962 41 AAGTAAAGAAGAGGCAACCACGTTCTCCAATGCAATGCTGT AAGTAAAGAAGAGGCAACCACATTCTCCAATGCAATGCTGT < 41bp 1 0.0226216682192824 1 0.137152075767517 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVL ENSG00000196405 CDS Human protein_coding chr14:100563942 chr14:100563943 synonymous SNV . 0 22 hm5C_associated_SNPs_10648 0 0 0 0 1 chromatin 1 0.500231644534295 1 0.99953671093141 hm5C_site_12912 DeepMRMD:1;iRNA_m5C:0.99953671093141 12913 chr14 100594957 100594957 1 + A C rs565113043 100594949 + 100594929 100594969 41 CCCCCCACCCCCAGTCCCACCTCCACCCACTGGGGCTACCC CCCCCCACCCCCAGTCCCACCTCCACCCCCTGGGGCTACCC < 41bp 1 0.688320900745682 1 0.916184663772583 experiment 0.623358198508637 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EVL ENSG00000196405 CDS Human protein_coding chr14:100594949 chr14:100594957 nonsynonymous SNV 0.870 0 29 hm5C_associated_SNPs_10649 0 0 1 0 0 chromatin 1 0.500231643921092 0.167630672454834 0.999536712157815 hm5C_site_12913 DeepMRMD:0.167630672454834;iRNA_m5C:0.999536712157815 12914 chr14 100610127 100610127 1 + A G rs58103906 100610126 + 100610106 100610146 41 GCCCATCCGGCGACAGAGGACAGCCAGAAGCCCAGCCAGCC GCCCATCCGGCGACAGAGGACGGCCAGAAGCCCAGCCAGCC < 41bp 1 0.421921527966578 1 0.482740074396133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVL ENSG00000196405 UTR3 Human protein_coding chr14:100610126 chr14:100610127 . . 0 22 hm5C_associated_SNPs_10650 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12914 DeepMRMD:1;iRNA_m5C:0.999536712157815 12915 chr14 100842813 100842813 1 + G C rs562483045 100842831 + 100842811 100842851 41 CCGGGAGAACCGAGCGCTTCCGGTGCGTGTGGTGAGCGGCG CCCGGAGAACCGAGCGCTTCCGGTGCGTGTGGTGAGCGGCG < 41bp 1 0.673204712960405 1 0.590130209922791 experiment 0.65359057407919 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR25 ENSG00000140105;ENSG00000176473 UTR5 Human other chr14:100842831 chr14:100842813 . . 0 3 hm5C_associated_SNPs_10653 0 0 0 0 1 chromatin 1 0.500231645649422 0.819739580154418 0.999536708701155 hm5C_site_12915 DeepMRMD:0.819739580154418;iRNA_m5C:0.999536708701155 12916 chr14 100842848 100842848 1 + G A rs577898050 100842831 + 100842811 100842851 41 CCGGGAGAACCGAGCGCTTCCGGTGCGTGTGGTGAGCGGCG CCGGGAGAACCGAGCGCTTCCGGTGCGTGTGGTGAGCAGCG < 41bp 1 0.666411274199645 1 0.508890450000763 experiment 0.66717745160071 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR25 ENSG00000140105;ENSG00000176473 UTR5 Human other chr14:100842831 chr14:100842848 . . 0 38 hm5C_associated_SNPs_10654 0 0 0 0 0 chromatin 1 0.500231645596519 0.982219099998474 0.999536708806962 hm5C_site_12916 DeepMRMD:0.982219099998474;iRNA_m5C:0.999536708806962 12917 chr14 100996312 100996312 1 + T A rs13065 100996330 + 100996310 100996350 41 TATCACCCCGTGCTGCCCTCCGTCCTCGCCACCTGCTCCTG TAACACCCCGTGCTGCCCTCCGTCCTCGCCACCTGCTCCTG < 41bp 1 0.17637792061426 1 0.75983077287674 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100996330 chr14:100996312 stopgain 0.952 0 3 hm5C_associated_SNPs_10655 0 0 1 0 0 chromatin 1 0.500231644105686 0.48033845424652 0.999536711788627 hm5C_site_12917 DeepMRMD:0.48033845424652;iRNA_m5C:0.999536711788627 12918 chr14 101296084 101296084 1 + C G rs183426957 101296099 + 101296079 101296119 41 TGCATCAGGTAGGGGCTTTGCAGAGACCATCGACGGGCTGA TGCATGAGGTAGGGGCTTTGCAGAGACCATCGACGGGCTGA < 41bp 1 0.644412437505902 1 0.859982073307037 experiment 0.711175124988196 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MEG3 ENSG00000214548 ncRNA_exonic Human lincRNA chr14:101296099 chr14:101296084 . . 0 6 hm5C_associated_SNPs_10656 0 0 1 0 2 unknown 1 0.500231643946705 0.280035853385926 0.999536712106591 hm5C_site_12918 DeepMRMD:0.280035853385926;iRNA_m5C:0.999536712106591 12919 chr14 101296097 101296097 1 + T C rs3087916 101296099 + 101296079 101296119 41 TGCATCAGGTAGGGGCTTTGCAGAGACCATCGACGGGCTGA TGCATCAGGTAGGGGCTTCGCAGAGACCATCGACGGGCTGA < 41bp 1 0.641431528405077 1 0.803619503974915 experiment 0.717136943189847 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MEG3 ENSG00000214548 ncRNA_exonic Human lincRNA chr14:101296099 chr14:101296097 . . 0 19 hm5C_associated_SNPs_10657 0 0 1 0 1 unknown 1 0.500231643925644 0.39276099205017 0.999536712148712 hm5C_site_12919 DeepMRMD:0.39276099205017;iRNA_m5C:0.999536712148712 12920 chr14 101316694 101316694 1 + G A rs542199854 101316687 + 101316667 101316707 41 AATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCATGAG AATCCCAGCACTTTGGGAGGCCGAGGTAGGCGGATCATGAG < 41bp 1 0.613768742551688 1 0.890897274017334 experiment 0.772462514896624 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MEG3 ENSG00000214548;ENSG00000258663 ncRNA_intronic Human other chr14:101316687 chr14:101316694 . . 0 28 hm5C_associated_SNPs_10658 0 0 0 0 0 unknown 1 0.500231643921092 0.218205451965332 0.999536712157815 hm5C_site_12920 DeepMRMD:0.218205451965332;iRNA_m5C:0.999536712157815 12921 chr14 101319229 101319229 1 + C A rs541177092 101319220 + 101319200 101319240 41 GAGAGCAGCTCTGGGGAGACCCACTGGTGCCCTGGAGGCTG GAGAGCAGCTCTGGGGAGACCCACTGGTGACCTGGAGGCTG < 41bp 1 0.273634716641172 1 0.322406470775604 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MEG3 ENSG00000214548;ENSG00000258663 ncRNA_intronic Human other chr14:101319220 chr14:101319229 . . 0 30 hm5C_associated_SNPs_10659 0 0 0 0 0 unknown 1 0.500231640842873 1 0.999536718314254 hm5C_site_12921 DeepMRMD:1;iRNA_m5C:0.999536718314254 12922 chr14 101419725 101419725 1 + C A rs79074703 101419734 + 101419714 101419754 41 TGAGTCATGGACGATGAATACTACGTGTCTGAAACTCTGAG TGAGTCATGGAAGATGAATACTACGTGTCTGAAACTCTGAG < 41bp 1 0.53772823927216 1 0.101414382457733 experiment 0.92454352145568 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419734 chr14:101419725 . . 0 12 hm5C_associated_SNPs_10660 0 0 1 0 0 unknown 1 0.500231663406025 1 0.99953667318795 hm5C_site_12922 DeepMRMD:1;iRNA_m5C:0.99953667318795 12923 chr14 101419725 101419725 1 + C A rs79074703 101419742 + 101419722 101419762 41 GGACGATGAATACTACGTGTCTGAAACTCTGAGGTCCAACA GGAAGATGAATACTACGTGTCTGAAACTCTGAGGTCCAACA < 41bp 1 0.532486928206988 1 0.102746695280075 experiment 0.935026143586024 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419742 chr14:101419725 . . 0 4 hm5C_associated_SNPs_10661 0 0 1 0 0 unknown 1 0.500231824172717 1 0.999536351654566 hm5C_site_12923 DeepMRMD:1;iRNA_m5C:0.999536351654566 12924 chr14 102466430 102466430 1 + G A rs34690489 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCACTGG < 41bp 1 0.194248407748293 1 0.67035299539566 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466430 synonymous SNV . 0 37 hm5C_associated_SNPs_10662 5 0 1 0 1 Cytosol 1 0.500231643921343 0.65929400920868 0.999536712157314 hm5C_site_12924 DeepMRMD:0.65929400920868;iRNA_m5C:0.999536712157314 not specified not specified 12925 chr14 102499701 102499701 1 + C T rs75075497 102499719 + 102499699 102499739 41 AACGAGGTGGAGCAGATGATCCGAGACCTGGAAGCCAGCAT AATGAGGTGGAGCAGATGATCCGAGACCTGGAAGCCAGCAT < 41bp 1 0.202471719137145 1 0.811618089675903 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499719 chr14:102499701 synonymous SNV . 0 3 hm5C_associated_SNPs_10663 2 0 1 0 1 Cytosol 1 0.500231643921089 0.376763820648194 0.999536712157821 hm5C_site_12925 DeepMRMD:0.376763820648194;iRNA_m5C:0.999536712157821 not specified not specified 12926 chr14 102499701 102499701 1 + C T rs75075497 102499720 + 102499700 102499740 41 ACGAGGTGGAGCAGATGATCCGAGACCTGGAAGCCAGCATC ATGAGGTGGAGCAGATGATCCGAGACCTGGAAGCCAGCATC < 41bp 1 0.505235675006609 1 0.816608428955078 experiment 0.989528649986781 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499720 chr14:102499701 synonymous SNV . 0 2 hm5C_associated_SNPs_10664 2 0 1 0 1 Cytosol 1 0.500226602371195 0.366783142089844 0.99954679525761 hm5C_site_12926 DeepMRMD:0.366783142089844;iRNA_m5C:0.99954679525761 not specified not specified 12927 chr14 102783435 102783435 1 + T C rs575379113 102783431 + 102783411 102783451 41 GGGGGCCCAACGTCAGGCGGCCGGTTAGCTCAGTTGGTTAG GGGGGCCCAACGTCAGGCGGCCGGCTAGCTCAGTTGGTTAG < 41bp 1 0.306018474236403 1 0.124983578920364 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF839 ENSG00000022976 upstream Human protein_coding chr14:102783431 chr14:102783435 . . 0 25 hm5C_associated_SNPs_10665 0 0 1 0 0 chromatin 1 0.500231643921089 1 0.999536712157823 hm5C_site_12927 DeepMRMD:1;iRNA_m5C:0.999536712157823 12928 chr14 102783435 102783435 1 + T C rs575379113 102783432 + 102783412 102783452 41 GGGGCCCAACGTCAGGCGGCCGGTTAGCTCAGTTGGTTAGA GGGGCCCAACGTCAGGCGGCCGGCTAGCTCAGTTGGTTAGA < 41bp 1 0.39351955260228 1 0.124693959951401 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF839 ENSG00000022976 upstream Human protein_coding chr14:102783432 chr14:102783435 . . 0 24 hm5C_associated_SNPs_10666 0 0 1 0 0 chromatin 1 0.500231645023055 1 0.99953670995389 hm5C_site_12928 DeepMRMD:1;iRNA_m5C:0.99953670995389 12929 chr14 102783435 102783435 1 + T C rs575379113 102783439 + 102783419 102783459 41 AACGTCAGGCGGCCGGTTAGCTCAGTTGGTTAGAGCGTGGT AACGTCAGGCGGCCGGCTAGCTCAGTTGGTTAGAGCGTGGT < 41bp 1 0.689262458005005 1 0.455293983221054 experiment 0.62147508398999 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ZNF839 ENSG00000022976 upstream Human protein_coding chr14:102783439 chr14:102783435 . . 0 17 hm5C_associated_SNPs_10667 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12929 DeepMRMD:1;iRNA_m5C:0.999536712157815 12930 chr14 102792489 102792489 1 + G A rs7157941 102792493 + 102792473 102792513 41 GCCCTCAGCTGCTCAGGGTACAGCCGCTTGTGAGAACCGAG GCCCTCAGCTGCTCAGAGTACAGCCGCTTGTGAGAACCGAG < 41bp 1 0.378445624807491 1 0.170027256011963 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102792493 chr14:102792489 synonymous SNV . 0 17 hm5C_associated_SNPs_10670 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12930 DeepMRMD:1;iRNA_m5C:0.999536712157815 12931 chr14 102798023 102798023 1 + G A rs531362777 102798016 + 102797996 102798036 41 CTGAACCAGAAAATGGAGCTCTTTTGCGATCAGAGAGATAC CTGAACCAGAAAATGGAGCTCTTTTGCAATCAGAGAGATAC < 41bp 1 0.0452220039029904 1 0.0580668151378632 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102798016 chr14:102798023 nonsynonymous SNV 0.215 0 28 hm5C_associated_SNPs_10671 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_12931 DeepMRMD:1;iRNA_m5C:0.999536712157815 12932 chr14 102805187 102805187 1 + G A rs140733581 102805183 + 102805163 102805203 41 CATTAGGAATCACAGAATTCCTACGGAAGAAAGAAATACAC CATTAGGAATCACAGAATTCCTACAGAAGAAAGAAATACAC < 41bp 1 0.610905985541265 1 0.787894129753113 experiment 0.77818802891747 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805183 chr14:102805187 nonsynonymous SNV 0.046 1 25 hm5C_associated_SNPs_10672 0 0 1 1 1 chromatin 1 0.500231643916111 0.424211740493774 0.999536712167778 hm5C_site_12932 DeepMRMD:0.424211740493774;iRNA_m5C:0.999536712167778 12933 chr14 103194998 103194998 1 + A G rs8006699 103194999 + 103194979 103195019 41 TTTTTATATAGCGTGGCAAACTGACCAGCAGTGCCAGGCCT TTTTTATATAGCGTGGCAAGCTGACCAGCAGTGCCAGGCCT < 41bp 1 0.415054289866684 1 0.093802809715271 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCOR1 ENSG00000089902 UTR3 Human protein_coding chr14:103194999 chr14:103194998 . . 0 20 hm5C_associated_SNPs_10673 0 0 1 0 0 Cytosol 1 0.500231648908144 1 0.999536702183713 hm5C_site_12933 DeepMRMD:1;iRNA_m5C:0.999536702183713 12934 chr14 103195012 103195012 1 + C T rs537173816 103194999 + 103194979 103195019 41 TTTTTATATAGCGTGGCAAACTGACCAGCAGTGCCAGGCCT TTTTTATATAGCGTGGCAAACTGACCAGCAGTGTCAGGCCT < 41bp 1 0.384840800939868 1 0.0927510261535645 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCOR1 ENSG00000089902 UTR3 Human protein_coding chr14:103194999 chr14:103195012 . . 0 34 hm5C_associated_SNPs_10674 0 0 1 0 0 Cytosol 1 0.500231609873947 1 0.999536780252107 hm5C_site_12934 DeepMRMD:1;iRNA_m5C:0.999536780252107 12935 chr14 103373434 103373434 1 + C G rs72704737 103373432 + 103373412 103373452 41 AGCCTCCGCTGCTTAATTACCACAGATTCCAAATCTCTAGG AGCCTCCGCTGCTTAATTACCAGAGATTCCAAATCTCTAGG < 41bp 1 0.573356350464563 1 0.323808610439301 experiment 0.853287299070874 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TRAF3 ENSG00000131323 UTR3 Human protein_coding chr14:103373432 chr14:103373434 . . 0 23 hm5C_associated_SNPs_10675 0 0 0 0 0 Cytosol 1 0.500231643919185 1 0.99953671216163 hm5C_site_12935 DeepMRMD:1;iRNA_m5C:0.99953671216163 12936 chr14 103602008 103602008 1 + G A rs115471053 103602018 + 103601998 103602038 41 GTGCAGCCAGGCTCAGGGATCCCCGGACACCTCTGTCCAGA GTGCAGCCAGACTCAGGGATCCCCGGACACCTCTGTCCAGA < 41bp 1 0.437064957009644 1 0.145453065633774 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TNFAIP2 ENSG00000185215 UTR3 Human protein_coding chr14:103602018 chr14:103602008 . . 0 11 hm5C_associated_SNPs_10677 0 0 1 0 0 Nucleus 1 0.500231643925346 1 0.999536712149308 hm5C_site_12936 DeepMRMD:1;iRNA_m5C:0.999536712149308 12937 chr14 103804276 103804276 1 + T C rs191428158 103804263 + 103804243 103804283 41 GCAAGAAAGTCTAACCTATTCCGGTGTTCTCTCTCCCATGA GCAAGAAAGTCTAACCTATTCCGGTGTTCTCTCCCCCATGA < 41bp 1 0.525758157513252 1 0.316789746284485 experiment 0.948483684973497 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804263 chr14:103804276 . . 0 34 hm5C_associated_SNPs_10678 0 0 1 1 0 unknown 1 0.500231643921114 1 0.999536712157773 hm5C_site_12937 DeepMRMD:1;iRNA_m5C:0.999536712157773 12938 chr14 103804276 103804276 1 + T C rs191428158 103804264 + 103804244 103804284 41 CAAGAAAGTCTAACCTATTCCGGTGTTCTCTCTCCCATGAG CAAGAAAGTCTAACCTATTCCGGTGTTCTCTCCCCCATGAG < 41bp 1 0.371861766493273 1 0.703804314136505 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804264 chr14:103804276 . . 0 33 hm5C_associated_SNPs_10679 0 0 1 1 0 unknown 1 0.500231643921086 0.59239137172699 0.999536712157828 hm5C_site_12938 DeepMRMD:0.59239137172699;iRNA_m5C:0.999536712157828 12939 chr14 103804276 103804276 1 + T C rs191428158 103804271 + 103804251 103804291 41 GTCTAACCTATTCCGGTGTTCTCTCTCCCATGAGACAAGCC GTCTAACCTATTCCGGTGTTCTCTCCCCCATGAGACAAGCC < 41bp 1 0.0638054073216403 1 0.0951546430587769 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804271 chr14:103804276 . . 0 26 hm5C_associated_SNPs_10680 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12939 DeepMRMD:1;iRNA_m5C:0.999536712157815 12940 chr14 103804276 103804276 1 + T C rs191428158 103804277 + 103804257 103804297 41 CCTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATA CCTATTCCGGTGTTCTCTCCCCCATGAGACAAGCCGTTATA < 41bp 1 0.179162752813158 1 0.229976505041122 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804277 chr14:103804276 . . 0 20 hm5C_associated_SNPs_10681 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12940 DeepMRMD:1;iRNA_m5C:0.999536712157815 12941 chr14 103804276 103804276 1 + T C rs191428158 103804278 + 103804258 103804298 41 CTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATAT CTATTCCGGTGTTCTCTCCCCCATGAGACAAGCCGTTATAT < 41bp 1 0.0922534396172968 1 0.317857027053833 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804278 chr14:103804276 . . 0 19 hm5C_associated_SNPs_10682 0 0 1 1 0 unknown 1 0.500233042070077 1 0.999533915859846 hm5C_site_12941 DeepMRMD:1;iRNA_m5C:0.999533915859846 12942 chr14 103804276 103804276 1 + T C rs191428158 103804279 + 103804259 103804299 41 TATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATATA TATTCCGGTGTTCTCTCCCCCATGAGACAAGCCGTTATATA < 41bp 1 0.382967096268552 1 0.458262503147125 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804279 chr14:103804276 . . 0 18 hm5C_associated_SNPs_10683 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12942 DeepMRMD:1;iRNA_m5C:0.999536712157815 12943 chr14 103804296 103804296 1 + T C rs552309514 103804277 + 103804257 103804297 41 CCTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATA CCTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTACA < 41bp 1 0.21546819430286 1 0.374909698963165 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804277 chr14:103804296 . . 0 40 hm5C_associated_SNPs_10684 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_12943 DeepMRMD:1;iRNA_m5C:0.999536712157815 12944 chr14 103804296 103804296 1 + T C rs552309514 103804278 + 103804258 103804298 41 CTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATAT CTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTACAT < 41bp 1 0.101256579314868 1 0.207501620054245 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804278 chr14:103804296 . . 0 39 hm5C_associated_SNPs_10685 0 0 1 1 0 unknown 1 0.50023331440255 1 0.9995333711949 hm5C_site_12944 DeepMRMD:1;iRNA_m5C:0.9995333711949 12945 chr14 103804296 103804296 1 + T C rs552309514 103804279 + 103804259 103804299 41 TATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATATA TATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTACATA < 41bp 1 0.51675508300905 1 0.361443221569061 experiment 0.9664898339819 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804279 chr14:103804296 . . 0 38 hm5C_associated_SNPs_10686 0 0 1 1 0 unknown 1 0.500231643921048 1 0.999536712157903 hm5C_site_12945 DeepMRMD:1;iRNA_m5C:0.999536712157903 12946 chr14 104001837 104001837 1 + G A rs576227632 104001829 + 104001809 104001849 41 TCCCCCACCCAGCCAGAGCCCCTGACATGGGCTGCACTCGC TCCCCCACCCAGCCAGAGCCCCTGACATAGGCTGCACTCGC < 41bp 1 0.359028399399505 1 0.119098663330078 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRMT61A ENSG00000166166 UTR3 Human protein_coding chr14:104001829 chr14:104001837 . . 0 29 hm5C_associated_SNPs_10687 0 0 1 0 0 Cytosol 1 0.500231642659876 1 0.999536714680248 hm5C_site_12946 DeepMRMD:1;iRNA_m5C:0.999536714680248 12947 chr14 104001847 104001847 1 + C T rs79958358 104001829 + 104001809 104001849 41 TCCCCCACCCAGCCAGAGCCCCTGACATGGGCTGCACTCGC TCCCCCACCCAGCCAGAGCCCCTGACATGGGCTGCACTTGC < 41bp 1 0.373376680922907 1 0.0858614146709442 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRMT61A ENSG00000166166 UTR3 Human protein_coding chr14:104001829 chr14:104001847 . . 0 39 hm5C_associated_SNPs_10688 0 0 1 0 0 Cytosol 1 0.500231643880234 1 0.999536712239532 hm5C_site_12947 DeepMRMD:1;iRNA_m5C:0.999536712239532 12948 chr14 104002162 104002162 1 + G A rs118094429 104002156 + 104002136 104002176 41 GGACGCCCAGGCTGGGGGCTCTCCTCGCCCGCCCTGGTGTC GGACGCCCAGGCTGGGGGCTCTCCTCACCCGCCCTGGTGTC < 41bp 1 0.453087126318293 1 0.111204922199249 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRMT61A ENSG00000166166 UTR3 Human protein_coding chr14:104002156 chr14:104002162 . . 0 27 hm5C_associated_SNPs_10689 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12948 DeepMRMD:1;iRNA_m5C:0.999536712157815 12949 chr14 104002165 104002165 1 + C T rs556420467 104002156 + 104002136 104002176 41 GGACGCCCAGGCTGGGGGCTCTCCTCGCCCGCCCTGGTGTC GGACGCCCAGGCTGGGGGCTCTCCTCGCCTGCCCTGGTGTC < 41bp 1 0.409827423341082 1 0.127527236938477 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRMT61A ENSG00000166166 UTR3 Human protein_coding chr14:104002156 chr14:104002165 . . 0 30 hm5C_associated_SNPs_10690 0 0 1 0 0 Cytosol 1 0.5002316439261 1 0.9995367121478 hm5C_site_12949 DeepMRMD:1;iRNA_m5C:0.9995367121478 12950 chr14 104037965 104037965 1 + A C rs143925033 104037976 + 104037956 104037996 41 AAAGGTCTCAAGATTCTGCCCTCCAAGAAAGTCTTGCCATG AAAGGTCTCCAGATTCTGCCCTCCAAGAAAGTCTTGCCATG < 41bp 1 0.667770770910967 1 0.980594396591187 experiment 0.664458458178065 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74773;RNA-BisSeq;Huh7;Control APOPT1 ENSG00000256053;ENSG00000256500 CDS Human other chr14:104037976 chr14:104037965 synonymous SNV . 0 10 hm5C_associated_SNPs_10691 0 0 1 0 1 Ribosome 1 0.500231643921707 0.0388112068176261 0.999536712156585 hm5C_site_12950 DeepMRMD:0.0388112068176261;iRNA_m5C:0.999536712156585 12951 chr14 104160023 104160023 1 + G A rs12586661 104160040 + 104160020 104160060 41 ACCGCCCTGCCCGGAGGCGCCAGCCGCACTCCTTGGCTTCC ACCACCCTGCCCGGAGGCGCCAGCCGCACTCCTTGGCTTCC < 41bp 1 0.431884757817142 1 0.727548956871033 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104160040 chr14:104160023 . . 0 4 hm5C_associated_SNPs_10692 0 0 1 0 0 Cytosol 1 0.500231643909829 0.544902086257934 0.999536712180342 hm5C_site_12951 DeepMRMD:0.544902086257934;iRNA_m5C:0.999536712180342 12952 chr14 104167545 104167545 1 + G A rs709399 104167542 + 104167522 104167562 41 CTATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAG CTATCTTCTCTTGCAGTGACCCCAACCTGGCCCCGCTCCAG < 41bp 1 0.300308595261806 1 0.2059545814991 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167542 chr14:104167545 . . 0 24 hm5C_associated_SNPs_10693 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12952 DeepMRMD:1;iRNA_m5C:0.999536712157815 12953 chr14 104167545 104167545 1 + G A rs709399 104167543 + 104167523 104167563 41 TATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAGG TATCTTCTCTTGCAGTGACCCCAACCTGGCCCCGCTCCAGG < 41bp 1 0.0884408659690413 1 0.235670775175095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167543 chr14:104167545 . . 0 23 hm5C_associated_SNPs_10694 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12953 DeepMRMD:1;iRNA_m5C:0.999536712157815 12954 chr14 104167545 104167545 1 + G A rs709399 104167544 + 104167524 104167564 41 ATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAGGA ATCTTCTCTTGCAGTGACCCCAACCTGGCCCCGCTCCAGGA < 41bp 1 0.254997086732229 1 0.297566711902618 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167544 chr14:104167545 . . 0 22 hm5C_associated_SNPs_10695 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12954 DeepMRMD:1;iRNA_m5C:0.999536712157815 12955 chr14 104167556 104167556 1 + G A rs375083845 104167542 + 104167522 104167562 41 CTATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAG CTATCTTCTCTTGCAGTGACCCCGACCTGGCCCCACTCCAG < 41bp 1 0.51096127370887 1 0.248290300369263 experiment 0.978077452582261 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167542 chr14:104167556 . . 0 35 hm5C_associated_SNPs_10696 0 0 1 0 1 Cytosol 1 0.500231646840625 1 0.99953670631875 hm5C_site_12955 DeepMRMD:1;iRNA_m5C:0.99953670631875 12956 chr14 104167556 104167556 1 + G A rs375083845 104167543 + 104167523 104167563 41 TATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAGG TATCTTCTCTTGCAGTGACCCCGACCTGGCCCCACTCCAGG < 41bp 1 0.139805714245844 1 0.292084336280823 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167543 chr14:104167556 . . 0 34 hm5C_associated_SNPs_10697 0 0 1 0 1 Cytosol 1 0.500231643921226 1 0.999536712157548 hm5C_site_12956 DeepMRMD:1;iRNA_m5C:0.999536712157548 12957 chr14 104167556 104167556 1 + G A rs375083845 104167544 + 104167524 104167564 41 ATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAGGA ATCTTCTCTTGCAGTGACCCCGACCTGGCCCCACTCCAGGA < 41bp 1 0.301629729814694 1 0.415646642446518 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167544 chr14:104167556 . . 0 33 hm5C_associated_SNPs_10698 0 0 1 0 1 Cytosol 1 0.50023165331652 1 0.999536693366961 hm5C_site_12957 DeepMRMD:1;iRNA_m5C:0.999536693366961 12958 chr14 104167564 104167564 1 + A G rs861536 104167544 + 104167524 104167564 41 ATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAGGA ATCTTCTCTTGCAGTGACCCCGACCTGGCCCCGCTCCAGGG < 41bp 1 0.325301976895218 1 0.655885219573975 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167544 chr14:104167564 . . 0 41 hm5C_associated_SNPs_10699 0 0 1 0 1 Cytosol 1 0.500231643945947 0.68822956085205 0.999536712108107 hm5C_site_12958 DeepMRMD:0.68822956085205;iRNA_m5C:0.999536712108107 12959 chr14 104167643 104167643 1 + G A rs184692165 104167636 + 104167616 104167656 41 GGAGGGCCCCTGGCCGGGAGCCGCAGCGCTCACTCATTTCT GGAGGGCCCCTGGCCGGGAGCCGCAGCACTCACTCATTTCT < 41bp 1 0.554812664562856 1 0.204432964324951 experiment 0.890374670874288 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167636 chr14:104167643 . . 0 28 hm5C_associated_SNPs_10700 0 0 0 1 0 Cytosol 1 0.500231643172294 1 0.999536713655412 hm5C_site_12959 DeepMRMD:1;iRNA_m5C:0.999536713655412 12960 chr14 104167643 104167643 1 + G A rs184692165 104167637 + 104167617 104167657 41 GAGGGCCCCTGGCCGGGAGCCGCAGCGCTCACTCATTTCTC GAGGGCCCCTGGCCGGGAGCCGCAGCACTCACTCATTTCTC < 41bp 1 0.56203317416295 1 0.630339324474335 experiment 0.8759336516741 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214 UTR3 Human protein_coding chr14:104167637 chr14:104167643 . . 0 27 hm5C_associated_SNPs_10701 0 0 0 1 0 Cytosol 1 0.500231643921092 0.73932135105133 0.999536712157815 hm5C_site_12960 DeepMRMD:0.73932135105133;iRNA_m5C:0.999536712157815 12961 chr14 104642341 104642341 1 + A C rs2487304 104642339 + 104642319 104642359 41 CCCTGGCCTCGGGGTCCCGGCCAGTCAGCATCATCAGCAGC CCCTGGCCTCGGGGTCCCGGCCCGTCAGCATCATCAGCAGC < 41bp 1 0.11695553522863 1 0.0924790501594543 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642339 chr14:104642341 synonymous SNV . 0 23 hm5C_associated_SNPs_10704 0 0 0 0 0 Ribosome 1 0.500231643921131 1 0.999536712157737 hm5C_site_12961 DeepMRMD:1;iRNA_m5C:0.999536712157737 12962 chr14 104642341 104642341 1 + A C rs2487304 104642340 + 104642320 104642360 41 CCTGGCCTCGGGGTCCCGGCCAGTCAGCATCATCAGCAGCA CCTGGCCTCGGGGTCCCGGCCCGTCAGCATCATCAGCAGCA < 41bp 1 0.0360301226241345 1 0.0492989122867584 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642340 chr14:104642341 synonymous SNV . 0 22 hm5C_associated_SNPs_10705 0 0 0 0 0 Ribosome 1 0.500240959725428 1 0.999518080549145 hm5C_site_12962 DeepMRMD:1;iRNA_m5C:0.999518080549145 12963 chr14 104642767 104642767 1 + G A rs147369482 104642772 + 104642752 104642792 41 CCTCCCCCGGAAACCGAGGACTGCCTCTGCCACCACCCGTG CCTCCCCCGGAAACCAAGGACTGCCTCTGCCACCACCCGTG < 41bp 1 0.191695716872777 1 0.0797576606273651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642772 chr14:104642767 synonymous SNV . 0 16 hm5C_associated_SNPs_10706 0 0 1 0 0 Ribosome 1 0.500231643921663 1 0.999536712156674 hm5C_site_12963 DeepMRMD:1;iRNA_m5C:0.999536712156674 12964 chr14 104642791 104642791 1 + T C rs112809961 104642772 + 104642752 104642792 41 CCTCCCCCGGAAACCGAGGACTGCCTCTGCCACCACCCGTG CCTCCCCCGGAAACCGAGGACTGCCTCTGCCACCACCCGCG < 41bp 1 0.190877268884423 1 0.0637665987014771 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642772 chr14:104642791 synonymous SNV . 0 40 hm5C_associated_SNPs_10707 0 0 1 0 0 Ribosome 1 0.5002316771452 1 0.9995366457096 hm5C_site_12964 DeepMRMD:1;iRNA_m5C:0.9995366457096 12965 chr14 104642952 104642952 1 + T C rs201356632 104642936 + 104642916 104642956 41 CACTTGGCTCCCCCCGGCTGCCTGAGGCCCAGGTGATGCTA CACTTGGCTCCCCCCGGCTGCCTGAGGCCCAGGTGACGCTA < 41bp 1 0.249185668732119 1 0.367398589849472 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642936 chr14:104642952 nonsynonymous SNV 0.585 0 37 hm5C_associated_SNPs_10708 0 0 0 0 0 Ribosome 1 0.500231965612834 1 0.999536068774332 hm5C_site_12965 DeepMRMD:1;iRNA_m5C:0.999536068774332 12966 chr14 104642952 104642952 1 + T C rs201356632 104642945 + 104642925 104642965 41 CCCCCCGGCTGCCTGAGGCCCAGGTGATGCTAGCCTGTGCC CCCCCCGGCTGCCTGAGGCCCAGGTGACGCTAGCCTGTGCC < 41bp 1 0.555976710549414 1 0.853253304958344 experiment 0.888046578901172 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642945 chr14:104642952 nonsynonymous SNV 0.585 0 28 hm5C_associated_SNPs_10709 0 0 0 0 0 Ribosome 1 0.500231644048748 0.293493390083312 0.999536711902504 hm5C_site_12966 DeepMRMD:0.293493390083312;iRNA_m5C:0.999536711902504 12967 chr14 104643424 104643424 1 + C T rs113089140 104643408 + 104643388 104643428 41 CCGGGCCAGCAAGGTAGAAGCAGCACACCGTCTTGCCGGAC CCGGGCCAGCAAGGTAGAAGCAGCACACCGTCTTGCTGGAC < 41bp 1 0.658210574198573 1 0.80652379989624 experiment 0.683578851602853 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104643408 chr14:104643424 synonymous SNV . 0 37 hm5C_associated_SNPs_10712 0 0 1 0 0 Ribosome 1 0.500231643921093 0.38695240020752 0.999536712157815 hm5C_site_12967 DeepMRMD:0.38695240020752;iRNA_m5C:0.999536712157815 12968 chr14 104644212 104644212 1 + A G rs61743202 104644198 + 104644178 104644218 41 GCTGCCTCCCCAGGCGCCCGCACCCGCAGCCTCAAGTCCCC GCTGCCTCCCCAGGCGCCCGCACCCGCAGCCTCAGGTCCCC < 41bp 1 0.15223897742156 1 0.0639415085315704 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104644198 chr14:104644212 nonsynonymous SNV 0.992 1 35 hm5C_associated_SNPs_10713 0 0 0 0 1 Ribosome 1 0.500231476388998 1 0.999537047222004 hm5C_site_12968 DeepMRMD:1;iRNA_m5C:0.999537047222004 12969 chr14 105179902 105179902 1 + G A rs148541427 105179914 + 105179894 105179934 41 CGGGGGCAGCAAGGCAGCCTCCATGGATCCCCCAAGAGCCA CGGGGGCAACAAGGCAGCCTCCATGGATCCCCCAAGAGCCA < 41bp 1 0.107386901014493 1 0.210903018712997 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105179914 chr14:105179902 nonsynonymous SNV 0.001 0 9 hm5C_associated_SNPs_10714 0 0 1 0 1 Cytosol 1 0.500231643924223 1 0.999536712151554 hm5C_site_12969 DeepMRMD:1;iRNA_m5C:0.999536712151554 12970 chr14 105179902 105179902 1 + G A rs148541427 105179915 + 105179895 105179935 41 GGGGGCAGCAAGGCAGCCTCCATGGATCCCCCAAGAGCCAC GGGGGCAACAAGGCAGCCTCCATGGATCCCCCAAGAGCCAC < 41bp 1 0.575734793579006 1 0.467676520347595 experiment 0.848530412841988 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105179915 chr14:105179902 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_10715 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_12970 DeepMRMD:1;iRNA_m5C:0.999536712157816 12971 chr14 105180785 105180785 1 + C T rs34251364 105180778 + 105180758 105180798 41 ACCACTGAGGATCCCCAGTGCCCCCAGCCCTTGGAGGGGGC ACCACTGAGGATCCCCAGTGCCCCCAGTCCTTGGAGGGGGC < 41bp 1 0.062189557902778 1 0.107746750116348 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105180778 chr14:105180785 nonsynonymous SNV 0.010 1 28 hm5C_associated_SNPs_10716 2 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12971 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 12972 chr14 105180785 105180785 1 + C T rs34251364 105180779 + 105180759 105180799 41 CCACTGAGGATCCCCAGTGCCCCCAGCCCTTGGAGGGGGCC CCACTGAGGATCCCCAGTGCCCCCAGTCCTTGGAGGGGGCC < 41bp 1 0.290684299381168 1 0.239322006702423 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105180779 chr14:105180785 nonsynonymous SNV 0.010 1 27 hm5C_associated_SNPs_10717 2 0 1 0 0 Cytosol 1 0.500224608884271 1 0.999550782231458 hm5C_site_12972 DeepMRMD:1;iRNA_m5C:0.999550782231458 not specified not specified 12973 chr14 105180785 105180785 1 + C T rs34251364 105180780 + 105180760 105180800 41 CACTGAGGATCCCCAGTGCCCCCAGCCCTTGGAGGGGGCCT CACTGAGGATCCCCAGTGCCCCCAGTCCTTGGAGGGGGCCT < 41bp 1 0.210981542288306 1 0.0486536026000977 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105180780 chr14:105180785 nonsynonymous SNV 0.010 1 26 hm5C_associated_SNPs_10718 2 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12973 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 12974 chr14 105180785 105180785 1 + C T rs34251364 105180781 + 105180761 105180801 41 ACTGAGGATCCCCAGTGCCCCCAGCCCTTGGAGGGGGCCTG ACTGAGGATCCCCAGTGCCCCCAGTCCTTGGAGGGGGCCTG < 41bp 1 0.198449266155167 1 0.120468437671661 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105180781 chr14:105180785 nonsynonymous SNV 0.010 1 25 hm5C_associated_SNPs_10719 2 0 1 0 0 Cytosol 1 0.500231643917789 1 0.999536712164422 hm5C_site_12974 DeepMRMD:1;iRNA_m5C:0.999536712164422 not specified not specified 12975 chr14 105180785 105180785 1 + C T rs34251364 105180782 + 105180762 105180802 41 CTGAGGATCCCCAGTGCCCCCAGCCCTTGGAGGGGGCCTGG CTGAGGATCCCCAGTGCCCCCAGTCCTTGGAGGGGGCCTGG < 41bp 1 0.221408295395532 1 0.216400742530823 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105180782 chr14:105180785 nonsynonymous SNV 0.010 1 24 hm5C_associated_SNPs_10720 2 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12975 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 12976 chr14 105180785 105180785 1 + C T rs34251364 105180798 + 105180778 105180818 41 CCCCCAGCCCTTGGAGGGGGCCTGGCCGGTGACTCTGGGAG CCCCCAGTCCTTGGAGGGGGCCTGGCCGGTGACTCTGGGAG < 41bp 1 0.114349481584226 1 0.293519258499146 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105180798 chr14:105180785 nonsynonymous SNV 0.010 1 8 hm5C_associated_SNPs_10721 2 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12976 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 12977 chr14 105209528 105209528 1 + C T rs139545166 105209523 + 105209503 105209543 41 GCTCACATGGTCAACGGATTCACTGCGTAAGCAACCCATGC GCTCACATGGTCAACGGATTCACTGTGTAAGCAACCCATGC < 41bp 1 0.601050921705992 1 0.18995413184166 experiment 0.797898156588016 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105209523 chr14:105209528 nonsynonymous SNV 0.978 2 26 hm5C_associated_SNPs_10722 0 0 1 0 1 Cytosol 1 0.500231651192375 1 0.99953669761525 hm5C_site_12977 DeepMRMD:1;iRNA_m5C:0.99953669761525 12978 chr14 105352944 105352944 1 + G A rs185809405 105352950 + 105352930 105352970 41 CACCAAGGGCCCCCGGGGAGCCAACTCCCGCCTCTTTCTTC CACCAAGGGCCCCCAGGGAGCCAACTCCCGCCTCTTTCTTC < 41bp 1 0.0502163705027149 1 0.0348977446556091 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105352950 chr14:105352944 nonsynonymous SNV 0.172 0 15 hm5C_associated_SNPs_10723 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_12978 DeepMRMD:1;iRNA_m5C:0.999536712157815 12979 chr14 105352970 105352970 1 + C T rs189275083 105352950 + 105352930 105352970 41 CACCAAGGGCCCCCGGGGAGCCAACTCCCGCCTCTTTCTTC CACCAAGGGCCCCCGGGGAGCCAACTCCCGCCTCTTTCTTT < 41bp 1 0.0425361888988176 1 0.0538603067398071 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105352950 chr14:105352970 synonymous SNV . 0 41 hm5C_associated_SNPs_10724 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_12979 DeepMRMD:1;iRNA_m5C:0.999536712157815 12980 chr14 105767292 105767292 1 + G A rs139282295 105767306 - 105767286 105767326 41 CTGCGCTCACCGGTAGGCCCCGCTCGGGTTCCGCCGAAGCC CTGCGCTCACCGGTAGGCCCCGCTCGGGTTCCGCTGAAGCC < 41bp 1 0.206303970428127 1 0.0463119447231293 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BRF1;PACS2 ENSG00000179364;ENSG00000185024 UTR5 Human other chr14:105767306 chr14:105767292 . . 0 35 hm5C_associated_SNPs_10725 0 0 0 0 0 unknown 1 0.5002316440831 1 0.999536711833801 hm5C_site_12980 DeepMRMD:1;iRNA_m5C:0.999536711833801 12981 chr14 105767293 105767293 1 + G C rs587657142 105767306 - 105767286 105767326 41 CTGCGCTCACCGGTAGGCCCCGCTCGGGTTCCGCCGAAGCC CTGCGCTCACCGGTAGGCCCCGCTCGGGTTCCGGCGAAGCC < 41bp 1 0.209406133900754 1 0.0404852330684662 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BRF1;PACS2 ENSG00000179364;ENSG00000185024 UTR5 Human other chr14:105767306 chr14:105767293 . . 0 34 hm5C_associated_SNPs_10726 0 0 0 0 0 unknown 1 0.500231698734982 1 0.999536602530035 hm5C_site_12981 DeepMRMD:1;iRNA_m5C:0.999536602530035 12982 chr14 105936288 105936288 1 + C T rs149260021 105936268 + 105936248 105936288 41 CCCTGCCCCCAGTCAAGCGGCGGCGGATGAACTGGATCGAC CCCTGCCCCCAGTCAAGCGGCGGCGGATGAACTGGATCGAT < 41bp 1 0.653674594032622 1 0.74238383769989 experiment 0.692650811934757 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936268 chr14:105936288 synonymous SNV . 0 41 hm5C_associated_SNPs_10727 0 0 1 0 1 Cytosol 1 0.500231643921092 0.51523232460022 0.999536712157815 hm5C_site_12982 DeepMRMD:0.51523232460022;iRNA_m5C:0.999536712157815 12983 chr14 105936288 105936288 1 + C T rs149260021 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGCGGCGGATGAACTGGATCGATGCCCCGGATGACGTGTT < 41bp 1 0.332720873419203 1 0.385664224624634 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936288 synonymous SNV . 0 24 hm5C_associated_SNPs_10728 0 0 1 0 1 Cytosol 1 0.500231643921099 1 0.999536712157802 hm5C_site_12983 DeepMRMD:1;iRNA_m5C:0.999536712157802 12984 chr14 105936300 105936300 1 + C T rs147974087 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGCGGCGGATGAACTGGATCGACGCCCCGGATGATGTGTT < 41bp 1 0.489524495084624 1 0.48183286190033 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936300 synonymous SNV . 0 36 hm5C_associated_SNPs_10729 0 0 1 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_12984 DeepMRMD:1;iRNA_m5C:0.999536712157815 Blood metabolite levels 12985 chr14 105936300 105936300 1 + C T rs147974087 105936315 + 105936295 105936335 41 GATGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG GATGATGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG < 41bp 1 0.57305496424729 1 0.565023005008698 experiment 0.853890071505419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936315 chr14:105936300 synonymous SNV . 0 6 hm5C_associated_SNPs_10730 0 0 1 1 1 Cytosol 1 0.50023164391824 0.869953989982604 0.999536712163521 hm5C_site_12985 DeepMRMD:0.869953989982604;iRNA_m5C:0.999536712163521 12986 chr14 105936300 105936300 1 + C T rs147974087 105936317 + 105936297 105936337 41 TGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGGCC TGATGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGGCC < 41bp 1 0.659959565341124 1 0.708763301372528 experiment 0.680080869317752 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936317 chr14:105936300 synonymous SNV . 0 4 hm5C_associated_SNPs_10731 0 0 1 1 1 Cytosol 1 0.500231643909293 0.582473397254944 0.999536712181414 hm5C_site_12986 DeepMRMD:0.582473397254944;iRNA_m5C:0.999536712181414 12987 chr14 105945110 105945110 1 + C T rs587721913 105945124 + 105945104 105945144 41 AGAAGCCCCTGGCGGAGGGGCCGCAGGTCACCGGCCCCATC AGAAGCTCCTGGCGGAGGGGCCGCAGGTCACCGGCCCCATC < 41bp 1 0.50005977417153 1 0.217069059610367 experiment 0.99988045165694 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRIP2 ENSG00000182809 CDS Human protein_coding chr14:105945124 chr14:105945110 nonsynonymous SNV 0.386 2 7 hm5C_associated_SNPs_10732 0 0 0 0 2 Ribosome 1 0.500231643923526 1 0.999536712152949 hm5C_site_12987 DeepMRMD:1;iRNA_m5C:0.999536712152949 12988 chr14 105958010 105958010 1 + G T rs587675709 105958028 + 105958008 105958048 41 CGGGCAACGCCTTGGCATCGCTCGCCCTGGGTAAGCCCCGC CGTGCAACGCCTTGGCATCGCTCGCCCTGGGTAAGCCCCGC < 41bp 1 0.659084072916005 1 0.0947177410125732 experiment 0.68183185416799 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105958028 chr14:105958010 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_10734 0 0 1 0 2 Ribosome 1 0.500223124638277 1 0.999553750723445 hm5C_site_12988 DeepMRMD:1;iRNA_m5C:0.999553750723445 12989 chr14 105958034 105958034 1 + C G rs373402464 105958028 + 105958008 105958048 41 CGGGCAACGCCTTGGCATCGCTCGCCCTGGGTAAGCCCCGC CGGGCAACGCCTTGGCATCGCTCGCCGTGGGTAAGCCCCGC < 41bp 1 0.659676457586206 1 0.0920794606208801 experiment 0.680647084827588 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105958028 chr14:105958034 nonsynonymous SNV 0.536 0 27 hm5C_associated_SNPs_10735 0 0 1 0 2 Ribosome 1 0.500231770114401 1 0.999536459771198 hm5C_site_12989 DeepMRMD:1;iRNA_m5C:0.999536459771198 12990 chr15 22863001 22863001 1 + A G rs17137283 22863000 + 22862980 22863020 41 TGATGTATGTGTGGATAGATCATCGGAATCTGTGACATGCC TGATGTATGTGTGGATAGATCGTCGGAATCTGTGACATGCC < 41bp 1 0.527700534210946 1 0.217714786529541 experiment 0.944598931578109 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBGCP5 ENSG00000153575 CDS Human other chr15:22863000 chr15:22863001 synonymous SNV . 0 22 hm5C_associated_SNPs_10737 0 0 1 0 1 chromatin 1 0.500231643913946 1 0.999536712172107 hm5C_site_12990 DeepMRMD:1;iRNA_m5C:0.999536712172107 12991 chr15 22940776 22940776 1 + G A rs139045862 22940756 + 22940736 22940776 41 GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAG GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAA < 41bp 1 0.356339304058767 1 0.282314956188202 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22940756 chr15:22940776 synonymous SNV . 0 41 hm5C_associated_SNPs_10738 0 0 1 0 2 Cytosol 1 0.500233686525065 1 0.999532626949871 hm5C_site_12991 DeepMRMD:1;iRNA_m5C:0.999532626949871 12992 chr15 22958334 22958334 1 + G A rs138234345 22958333 + 22958313 22958353 41 CCTGGAGACCAAGGAGGCATCGATGATGGAGTGCGTGTCCT CCTGGAGACCAAGGAGGCATCAATGATGGAGTGCGTGTCCT < 41bp 1 0.484298596956549 1 0.206998497247696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22958333 chr15:22958334 synonymous SNV . 0 22 hm5C_associated_SNPs_10739 0 0 1 0 1 Cytosol 1 0.500231643919455 1 0.999536712161091 hm5C_site_12992 DeepMRMD:1;iRNA_m5C:0.999536712161091 12993 chr15 22962518 22962518 1 + C T rs141106211 22962534 + 22962514 22962554 41 GCTACGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC GCTATGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC < 41bp 1 0.687863133461471 1 0.830853223800659 experiment 0.624273733077058 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22962534 chr15:22962518 synonymous SNV . 0 5 hm5C_associated_SNPs_10740 0 0 1 0 2 Cytosol 1 0.500229198862685 0.338293552398682 0.99954160227463 hm5C_site_12993 DeepMRMD:0.338293552398682;iRNA_m5C:0.99954160227463 12994 chr15 22969225 22969225 1 + G A rs562750082 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACACTGGACGGCTTCGACGCCATGTTCCG < 41bp 1 0.487098946226293 1 0.0854663252830505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969225 synonymous SNV . 0 15 hm5C_associated_SNPs_10741 0 0 1 0 1 Cytosol 1 0.500231643921371 1 0.999536712157258 hm5C_site_12994 DeepMRMD:1;iRNA_m5C:0.999536712157258 12995 chr15 22969232 22969232 1 + G A rs7170637 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACGCTGGACAGCTTCGACGCCATGTTCCG < 41bp 1 0.438716473707425 1 0.126876264810562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969232 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_10742 0 1 1 0 1 Cytosol 1 0.50023164394424 1 0.99953671211152 hm5C_site_12995 DeepMRMD:1;iRNA_m5C:0.99953671211152 12996 chr15 22969233 22969233 1 + G A rs17137190 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACGCTGGACGACTTCGACGCCATGTTCCG < 41bp 1 0.352950069152402 1 0.137651950120926 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969233 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_10743 0 0 1 0 1 Cytosol 1 0.500231645101272 1 0.999536709797456 hm5C_site_12996 DeepMRMD:1;iRNA_m5C:0.999536709797456 12997 chr15 22993121 22993121 1 + C T rs149042952 22993125 + 22993105 22993145 41 CGGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGA CGGGAGGTGGGGAACGTCATCCTCTTCTGCCTGCTCATCGA < 41bp 1 0.300351277833911 1 0.103889912366867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993125 chr15:22993121 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_10744 0 0 1 0 1 Cytosol 1 0.500231643919416 1 0.999536712161168 hm5C_site_12997 DeepMRMD:1;iRNA_m5C:0.999536712161168 12998 chr15 22993121 22993121 1 + C T rs149042952 22993126 + 22993106 22993146 41 GGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGAG GGGAGGTGGGGAACGTCATCCTCTTCTGCCTGCTCATCGAG < 41bp 1 0.432658948725336 1 0.38850873708725 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993126 chr15:22993121 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_10745 0 0 1 0 1 Cytosol 1 0.500231645747835 1 0.999536708504331 hm5C_site_12998 DeepMRMD:1;iRNA_m5C:0.999536708504331 12999 chr15 22993140 22993140 1 + C T rs143004668 22993125 + 22993105 22993145 41 CGGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGA CGGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTTATCGA < 41bp 1 0.213591436834816 1 0.0376859903335571 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993125 chr15:22993140 synonymous SNV . 0 36 hm5C_associated_SNPs_10746 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_12999 DeepMRMD:1;iRNA_m5C:0.999536712157812 13000 chr15 22993140 22993140 1 + C T rs143004668 22993126 + 22993106 22993146 41 GGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGAG GGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTTATCGAG < 41bp 1 0.400643403518053 1 0.264345943927765 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993126 chr15:22993140 synonymous SNV . 0 35 hm5C_associated_SNPs_10747 0 0 1 0 0 Cytosol 1 0.500231643921088 1 0.999536712157824 hm5C_site_13000 DeepMRMD:1;iRNA_m5C:0.999536712157824 13001 chr15 28912600 28912600 1 + G A rs2934043 28912607 + 28912587 28912627 41 CGGGAATGCGTCCGGCTTGCCTGGTACTTCGTTTTCCTGGC CGGGAATGCGTCCAGCTTGCCTGGTACTTCGTTTTCCTGGC < 41bp 1 0.689682821041591 1 0.245531111955643 experiment 0.620634357916818 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28912607 chr15:28912600 . . 0 14 hm5C_associated_SNPs_10750 0 0 0 0 1 unknown 1 0.500231651269217 1 0.999536697461566 hm5C_site_13001 DeepMRMD:1;iRNA_m5C:0.999536697461566 13002 chr15 29346705 29346705 1 + C A rs111870710 29346702 + 29346682 29346722 41 GAGGAGGCCAACGGGAACACCGGCGCCTCCCCCTACCGCCT GAGGAGGCCAACGGGAACACCGGAGCCTCCCCCTACCGCCT < 41bp 1 0.675609768024173 1 0.751289367675781 experiment 0.648780463951653 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control APBA2 ENSG00000034053 CDS Human protein_coding chr15:29346702 chr15:29346705 synonymous SNV . 0 24 hm5C_associated_SNPs_10756 0 0 1 0 0 Cytosol 1 0.500231643921891 0.497421264648438 0.999536712156219 hm5C_site_13002 DeepMRMD:0.497421264648438;iRNA_m5C:0.999536712156219 13003 chr15 29385285 29385285 1 + G A rs144741312 29385286 + 29385266 29385306 41 GCCCTCCTTCAGTTCCAGGGCCCTGCGAACCAGAAGACCTC GCCCTCCTTCAGTTCCAGGACCCTGCGAACCAGAAGACCTC < 41bp 1 0.080108097995025 1 0.187064170837402 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APBA2 ENSG00000034053 CDS Human protein_coding chr15:29385286 chr15:29385285 synonymous SNV . 0 20 hm5C_associated_SNPs_10757 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_13003 DeepMRMD:1;iRNA_m5C:0.999536712157814 13004 chr15 31221574 31221574 1 + C T rs117225217 31221554 + 31221534 31221574 41 TGAGCAGGAAGGCAGAGTGGCTTCCCTTGTCAGCTGGGATC TGAGCAGGAAGGCAGAGTGGCTTCCCTTGTCAGCTGGGATT < 41bp 1 0.165102830736792 1 0.0254212915897369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAN1 ENSG00000198690 CDS Human protein_coding chr15:31221554 chr15:31221574 nonsynonymous SNV 0.918 5 41 hm5C_associated_SNPs_10758 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13004 DeepMRMD:1;iRNA_m5C:0.999536712157815 13005 chr15 31233883 31233883 1 + A G rs201242225 31233902 + 31233882 31233922 41 CATAGCAGGCCTCCAGGGGGCCACTGCGCTGTTGCCGCAGC CGTAGCAGGCCTCCAGGGGGCCACTGCGCTGTTGCCGCAGC < 41bp 1 0.441257952861586 1 0.393127650022507 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTMR10 ENSG00000166912 CDS Human protein_coding chr15:31233902 chr15:31233883 synonymous SNV . 0 2 hm5C_associated_SNPs_10759 0 0 0 0 0 Cytosol 1 0.500231643921647 1 0.999536712156706 hm5C_site_13005 DeepMRMD:1;iRNA_m5C:0.999536712156706 13006 chr15 31664896 31664896 1 + G A rs375896278 31664877 + 31664857 31664897 41 TGGGGACAGAGCAGGCCAGCCAGTCTGGTGGAGCTCAGCGT TGGGGACAGAGCAGGCCAGCCAGTCTGGTGGAGCTCAGCAT < 41bp 1 0.257067513853761 1 0.161693900823593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLF13 ENSG00000169926 UTR3 Human protein_coding chr15:31664877 chr15:31664896 . . 0 40 hm5C_associated_SNPs_10760 0 0 0 0 0 Ribosome 1 0.5002317009748 1 0.9995365980504 hm5C_site_13006 DeepMRMD:1;iRNA_m5C:0.9995365980504 13007 chr15 31668382 31668382 1 + G A rs117820946 31668397 + 31668377 31668417 41 GTCCCGGCACTCCCTCGGGACCCATTCAGGATCTCAGCTGG GTCCCAGCACTCCCTCGGGACCCATTCAGGATCTCAGCTGG < 41bp 1 0.0985239792838121 1 0.0858476161956787 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KLF13 ENSG00000169926 UTR3 Human protein_coding chr15:31668397 chr15:31668382 . . 0 6 hm5C_associated_SNPs_10761 0 0 0 0 0 Ribosome 1 0.500231647516999 1 0.999536704966002 hm5C_site_13007 DeepMRMD:1;iRNA_m5C:0.999536704966002 13008 chr15 31668382 31668382 1 + G A rs117820946 31668398 + 31668378 31668418 41 TCCCGGCACTCCCTCGGGACCCATTCAGGATCTCAGCTGGG TCCCAGCACTCCCTCGGGACCCATTCAGGATCTCAGCTGGG < 41bp 1 0.0503138882265979 1 0.0741917788982391 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KLF13 ENSG00000169926 UTR3 Human protein_coding chr15:31668398 chr15:31668382 . . 0 5 hm5C_associated_SNPs_10762 0 0 0 0 0 Ribosome 1 0.500231644156946 1 0.999536711686108 hm5C_site_13008 DeepMRMD:1;iRNA_m5C:0.999536711686108 13009 chr15 31668382 31668382 1 + G A rs117820946 31668399 + 31668379 31668419 41 CCCGGCACTCCCTCGGGACCCATTCAGGATCTCAGCTGGGC CCCAGCACTCCCTCGGGACCCATTCAGGATCTCAGCTGGGC < 41bp 1 0.0742092952904961 1 0.0547286868095398 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KLF13 ENSG00000169926 UTR3 Human protein_coding chr15:31668399 chr15:31668382 . . 0 4 hm5C_associated_SNPs_10763 0 0 0 0 0 Ribosome 1 0.500231704601693 1 0.999536590796614 hm5C_site_13009 DeepMRMD:1;iRNA_m5C:0.999536590796614 13010 chr15 31669326 31669326 1 + G A rs150587242 31669325 + 31669305 31669345 41 TGGAAACCAGGTGTGTGAGCCGAATGCCTGCCAGGCCATGC TGGAAACCAGGTGTGTGAGCCAAATGCCTGCCAGGCCATGC < 41bp 1 0.382130241312296 1 0.314343005418777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLF13 ENSG00000169926 UTR3 Human protein_coding chr15:31669325 chr15:31669326 . . 0 22 hm5C_associated_SNPs_10764 0 0 1 0 0 Ribosome 1 0.500231644270382 1 0.999536711459237 hm5C_site_13010 DeepMRMD:1;iRNA_m5C:0.999536711459237 13011 chr15 36989578 36989578 1 + C A rs117638434 36989560 + 36989540 36989580 41 CATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCT CATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAAACT < 41bp 1 0.196386634002848 1 0.15148937702179 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989560 chr15:36989578 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_10766 0 0 1 0 2 Cytosol 1 0.500231646708102 1 0.999536706583796 hm5C_site_13011 DeepMRMD:1;iRNA_m5C:0.999536706583796 13012 chr15 36989578 36989578 1 + C A rs117638434 36989564 + 36989544 36989584 41 AGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCTGTCC AGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAAACTGTCC < 41bp 1 0.149778734193043 1 0.0426648557186127 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989564 chr15:36989578 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_10767 0 0 1 0 2 Cytosol 1 0.500231613308525 1 0.99953677338295 hm5C_site_13012 DeepMRMD:1;iRNA_m5C:0.99953677338295 13013 chr15 36989578 36989578 1 + C A rs117638434 36989579 + 36989559 36989599 41 ACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT ACTTGCTTCTAGAGAAAAAACTGTCCTTCCTAGGTAAGTAT < 41bp 1 0.243412230171038 1 0.0572905540466309 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989579 chr15:36989578 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_10768 0 0 1 0 2 Cytosol 1 0.500231874846129 1 0.999536250307741 hm5C_site_13013 DeepMRMD:1;iRNA_m5C:0.999536250307741 13014 chr15 36989578 36989578 1 + C A rs117638434 36989584 + 36989564 36989604 41 CTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC CTTCTAGAGAAAAAACTGTCCTTCCTAGGTAAGTATTATTC < 41bp 1 0.111410716184075 1 0.0961554944515228 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989584 chr15:36989578 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_10769 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13014 DeepMRMD:1;iRNA_m5C:0.999536712157815 13015 chr15 36989578 36989578 1 + C A rs117638434 36989587 + 36989567 36989607 41 CTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACA CTAGAGAAAAAACTGTCCTTCCTAGGTAAGTATTATTCACA < 41bp 1 0.0826370778576088 1 0.186193138360977 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989587 chr15:36989578 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_10770 0 0 1 0 2 Cytosol 1 0.500231650256461 1 0.999536699487078 hm5C_site_13015 DeepMRMD:1;iRNA_m5C:0.999536699487078 13016 chr15 38545196 38545196 1 + C T rs556907443 38545190 + 38545170 38545210 41 CACGGCGGAGGTTGCTGCCGCCACCCCCCTGCGGGGGTGGC CACGGCGGAGGTTGCTGCCGCCACCCTCCTGCGGGGGTGGC < 41bp 1 0.185003165508936 1 0.468428015708923 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPRED1 ENSG00000166068 UTR5 Human protein_coding chr15:38545190 chr15:38545196 . . 0 27 hm5C_associated_SNPs_10772 1 0 1 0 0 Ribosome 1 0.500231643921209 1 0.999536712157581 hm5C_site_13016 DeepMRMD:1;iRNA_m5C:0.999536712157581 Legius syndrome Legius syndrome 13017 chr15 38647426 38647426 1 + G A rs181980647 38647411 + 38647391 38647431 41 AGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTA AGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGAGATTA < 41bp 1 0.0901513755251757 1 0.0568139553070068 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPRED1 ENSG00000166068 UTR3 Human protein_coding chr15:38647411 chr15:38647426 . . 0 36 hm5C_associated_SNPs_10774 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13017 DeepMRMD:1;iRNA_m5C:0.999536712157815 13018 chr15 38647426 38647426 1 + G A rs181980647 38647412 + 38647392 38647432 41 GGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTAC GGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGAGATTAC < 41bp 1 0.347422481486567 1 0.121491372585297 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPRED1 ENSG00000166068 UTR3 Human protein_coding chr15:38647412 chr15:38647426 . . 0 35 hm5C_associated_SNPs_10775 0 0 0 0 0 Ribosome 1 0.500231645395476 1 0.999536709209049 hm5C_site_13018 DeepMRMD:1;iRNA_m5C:0.999536709209049 13019 chr15 38647426 38647426 1 + G A rs181980647 38647414 + 38647394 38647434 41 TGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAG TGATCCACCCACCTCGGCCTCCCAAAGTGCTGAGATTACAG < 41bp 1 0.504276008179593 1 0.0959122776985168 experiment 0.991447983640815 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPRED1 ENSG00000166068 UTR3 Human protein_coding chr15:38647414 chr15:38647426 . . 0 33 hm5C_associated_SNPs_10776 0 0 0 0 0 Ribosome 1 0.500231649153432 1 0.999536701693136 hm5C_site_13019 DeepMRMD:1;iRNA_m5C:0.999536701693136 13020 chr15 38647426 38647426 1 + G A rs181980647 38647415 + 38647395 38647435 41 GATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGG GATCCACCCACCTCGGCCTCCCAAAGTGCTGAGATTACAGG < 41bp 1 0.542516405937217 1 0.416938185691833 experiment 0.914967188125567 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPRED1 ENSG00000166068 UTR3 Human protein_coding chr15:38647415 chr15:38647426 . . 0 32 hm5C_associated_SNPs_10777 0 0 0 0 0 Ribosome 1 0.500231644401509 1 0.999536711196981 hm5C_site_13020 DeepMRMD:1;iRNA_m5C:0.999536711196981 13021 chr15 39887649 39887649 1 + C T rs1051442 39887667 + 39887647 39887687 41 AACCCCCAGGATCACTTCTCCTTGGCTTCCTTCTTTTCTGT AATCCCCAGGATCACTTCTCCTTGGCTTCCTTCTTTTCTGT < 41bp 1 0.34708853157949 1 0.216459929943085 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient THBS1 ENSG00000137801 UTR3 Human protein_coding chr15:39887667 chr15:39887649 . . 0 3 hm5C_associated_SNPs_10782 0 0 1 0 1 cytosol 1 0.500231678430977 1 0.999536643138046 hm5C_site_13021 DeepMRMD:1;iRNA_m5C:0.999536643138046 13022 chr15 39887848 39887848 1 + G A rs3743125 39887858 + 39887838 39887878 41 TGCTTCAGTTGGGAAGGTGCCCATTCCACTCTGCCTTTGTC TGCTTCAGTTAGGAAGGTGCCCATTCCACTCTGCCTTTGTC < 41bp 1 0.0310010169861208 1 0.106224536895752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control THBS1 ENSG00000137801 UTR3 Human protein_coding chr15:39887858 chr15:39887848 . . 0 11 hm5C_associated_SNPs_10783 0 0 1 0 0 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_13022 DeepMRMD:1;iRNA_m5C:0.999536712157815 13023 chr15 39889225 39889225 1 + T G rs143881942 39889227 + 39889207 39889247 41 AACTCTGCAGAGAAGTATTCCCAATAAGGAAATAGCATTGA AACTCTGCAGAGAAGTATGCCCAATAAGGAAATAGCATTGA < 41bp 1 0.104173179019827 1 0.0704556703567505 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THBS1 ENSG00000137801 UTR3 Human protein_coding chr15:39889227 chr15:39889225 . . 0 19 hm5C_associated_SNPs_10784 0 0 1 0 0 cytosol 1 0.500231643920538 1 0.999536712158923 hm5C_site_13023 DeepMRMD:1;iRNA_m5C:0.999536712158923 Breast cancer 13024 chr15 39889228 39889228 1 + C T rs184696047 39889227 + 39889207 39889247 41 AACTCTGCAGAGAAGTATTCCCAATAAGGAAATAGCATTGA AACTCTGCAGAGAAGTATTCCTAATAAGGAAATAGCATTGA < 41bp 1 0.221704549563259 1 0.067387580871582 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THBS1 ENSG00000137801 UTR3 Human protein_coding chr15:39889227 chr15:39889228 . . 0 22 hm5C_associated_SNPs_10785 0 0 1 0 0 cytosol 1 0.500231643921085 1 0.99953671215783 hm5C_site_13024 DeepMRMD:1;iRNA_m5C:0.99953671215783 13025 chr15 40453307 40453307 1 + A G rs2277559 40453308 + 40453288 40453328 41 GTTTGTTAGGGAGTCGTGTACGTGCCTTGGTCGCTTCTGTA GTTTGTTAGGGAGTCGTGTGCGTGCCTTGGTCGCTTCTGTA < 41bp 1 0.373752639803464 1 0.193102836608887 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BUB1B ENSG00000156970 UTR5 Human protein_coding chr15:40453308 chr15:40453307 . . 0 20 hm5C_associated_SNPs_10786 0 0 1 0 0 Nucleus 1 0.50023325826361 1 0.999533483472781 hm5C_site_13025 DeepMRMD:1;iRNA_m5C:0.999533483472781 13026 chr15 40453327 40453327 1 + T C rs375434078 40453308 + 40453288 40453328 41 GTTTGTTAGGGAGTCGTGTACGTGCCTTGGTCGCTTCTGTA GTTTGTTAGGGAGTCGTGTACGTGCCTTGGTCGCTTCTGCA < 41bp 1 0.380068288649165 1 0.241090476512909 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BUB1B ENSG00000156970 UTR5 Human protein_coding chr15:40453308 chr15:40453327 . . 0 40 hm5C_associated_SNPs_10787 0 0 1 0 0 Nucleus 1 0.500231702471064 1 0.999536595057873 hm5C_site_13026 DeepMRMD:1;iRNA_m5C:0.999536595057873 13027 chr15 40477831 40477831 1 + G A rs1801376 40477830 + 40477810 40477850 41 CATATGTGGAAGAGACTGCACGACAGCCAGTTATGTGAGTG CATATGTGGAAGAGACTGCACAACAGCCAGTTATGTGAGTG < 41bp 1 0.688096089231932 1 0.16503581404686 experiment 0.623807821536136 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BUB1B ENSG00000156970 CDS Human protein_coding chr15:40477830 chr15:40477831 nonsynonymous SNV 0.977 0 22 hm5C_associated_SNPs_10788 2 0 1 0 2 Nucleus 1 0.503321725250046 1 0.993356549499908 hm5C_site_13027 DeepMRMD:1;iRNA_m5C:0.993356549499908 Mosaic variegated aneuploidy syndrome 1,not specified Mosaic variegated aneuploidy syndrome 1,not specified 13028 chr15 40509803 40509803 1 + G A rs143232848 40509796 + 40509776 40509816 41 GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGT GTGCAGCTGGATGTTTTTACCCTCAGCAGCTTTCGGACTGT < 41bp 1 0.316488314543092 1 0.111525177955627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509796 chr15:40509803 nonsynonymous SNV 0.985 2 28 hm5C_associated_SNPs_10789 1 0 1 0 1 Nucleus 1 0.500231644020325 1 0.999536711959349 hm5C_site_13028 DeepMRMD:1;iRNA_m5C:0.999536711959349 Mosaic variegated aneuploidy syndrome 1 Mosaic variegated aneuploidy syndrome 1 13029 chr15 40509803 40509803 1 + G A rs143232848 40509802 + 40509782 40509822 41 CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT CTGGATGTTTTTACCCTCAGCAGCTTTCGGACTGTACAGAT < 41bp 1 0.3273606563556 1 0.389248043298721 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509802 chr15:40509803 nonsynonymous SNV 0.985 2 22 hm5C_associated_SNPs_10790 1 0 1 0 1 Nucleus 1 0.500231643910736 1 0.999536712178527 hm5C_site_13029 DeepMRMD:1;iRNA_m5C:0.999536712178527 Mosaic variegated aneuploidy syndrome 1 Mosaic variegated aneuploidy syndrome 1 13030 chr15 40513071 40513071 1 + A G rs8364 40513070 + 40513050 40513090 41 GACACATTTAGATGCACTACCATTGCTGTTCTACTTTTTGG GACACATTTAGATGCACTACCGTTGCTGTTCTACTTTTTGG < 41bp 1 0.159269814009818 1 0.0564484596252441 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BUB1B ENSG00000156970 UTR3 Human protein_coding chr15:40513070 chr15:40513071 . . 0 22 hm5C_associated_SNPs_10791 0 0 1 0 0 Nucleus 1 0.500231672202732 1 0.999536655594535 hm5C_site_13030 DeepMRMD:1;iRNA_m5C:0.999536655594535 13031 chr15 40660548 40660548 1 + C T rs200298254 40660557 + 40660537 40660577 41 CCCAGCCACCCCTTCGAGCGCTTCGACGCGGAGTATCGCCA CCCAGCCACCCTTTCGAGCGCTTCGACGCGGAGTATCGCCA < 41bp 1 0.1579437148758 1 0.205972790718079 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DISP2 ENSG00000140323 CDS Human protein_coding chr15:40660557 chr15:40660548 synonymous SNV . 0 12 hm5C_associated_SNPs_10792 0 0 0 0 0 nucleus 1 0.500231643921094 1 0.999536712157813 hm5C_site_13031 DeepMRMD:1;iRNA_m5C:0.999536712157813 13032 chr15 40660566 40660566 1 + G A rs72733420 40660557 + 40660537 40660577 41 CCCAGCCACCCCTTCGAGCGCTTCGACGCGGAGTATCGCCA CCCAGCCACCCCTTCGAGCGCTTCGACGCAGAGTATCGCCA < 41bp 1 0.179995715918857 1 0.0870566666126251 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DISP2 ENSG00000140323 CDS Human protein_coding chr15:40660557 chr15:40660566 synonymous SNV . 0 30 hm5C_associated_SNPs_10793 0 0 0 0 0 nucleus 1 0.500231643921003 1 0.999536712157994 hm5C_site_13032 DeepMRMD:1;iRNA_m5C:0.999536712157994 13033 chr15 40708545 40708545 1 + C T rs372504234 40708548 + 40708528 40708568 41 ACACAGGTAGCCCTGGACGGCATTCAGTGTTTTGGTGAGTG ACACAGGTAGCCCTGGATGGCATTCAGTGTTTTGGTGAGTG < 41bp 1 0.0658834337050676 1 0.0254197418689728 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IVD ENSG00000128928 CDS Human protein_coding chr15:40708548 chr15:40708545 synonymous SNV . 0 18 hm5C_associated_SNPs_10794 0 0 1 0 2 Cytosol 1 0.500231643923146 1 0.999536712153708 hm5C_site_13033 DeepMRMD:1;iRNA_m5C:0.999536712153708 13034 chr15 40711058 40711058 1 + G A rs115034694 40711053 + 40711033 40711073 41 AATAATAAACCTAGCCTAGCCAGGCGTGGTGGCTCATGCTT AATAATAAACCTAGCCTAGCCAGGCATGGTGGCTCATGCTT < 41bp 1 0.538931472410088 1 0.369767010211945 experiment 0.922137055179825 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control IVD ENSG00000128928 UTR3 Human protein_coding chr15:40711053 chr15:40711058 . . 0 26 hm5C_associated_SNPs_10795 1 0 1 0 0 Cytosol 1 0.50023164391815 1 0.9995367121637 hm5C_site_13034 DeepMRMD:1;iRNA_m5C:0.9995367121637 Isovaleryl-CoA dehydrogenase deficiency Isovaleryl-CoA dehydrogenase deficiency 13035 chr15 40759486 40759486 1 + T C rs188691405 40759467 + 40759447 40759487 41 CCAGAGTAGACTAACAGGCTCAGTCCCCTGTTGTCCTTGTG CCAGAGTAGACTAACAGGCTCAGTCCCCTGTTGTCCTTGCG < 41bp 1 0.15944725127842 1 0.213841080665588 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHD1 ENSG00000140320 UTR3 Human protein_coding chr15:40759467 chr15:40759486 . . 0 40 hm5C_associated_SNPs_10796 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13035 DeepMRMD:1;iRNA_m5C:0.999536712157815 13036 chr15 40862064 40862064 1 + C G rs1058734 40862046 + 40862026 40862066 41 CACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTA CACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCGTA < 41bp 1 0.310158887397149 1 0.464965254068375 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40862046 chr15:40862064 synonymous SNV . 0 39 hm5C_associated_SNPs_10797 0 0 1 0 1 Cytosol 1 0.500300809636598 1 0.999398380726805 hm5C_site_13036 DeepMRMD:1;iRNA_m5C:0.999398380726805 13037 chr15 40862064 40862064 1 + C G rs1058734 40862047 + 40862027 40862067 41 ACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTAC ACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCGTAC < 41bp 1 0.503111859827424 1 0.853866755962372 experiment 0.993776280345152 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40862047 chr15:40862064 synonymous SNV . 0 38 hm5C_associated_SNPs_10798 0 0 1 0 1 Cytosol 1 0.500231643921514 0.292266488075256 0.999536712156971 hm5C_site_13037 DeepMRMD:0.292266488075256;iRNA_m5C:0.999536712156971 13038 chr15 40863904 40863904 1 + C T rs150929149 40863922 + 40863902 40863942 41 GACAAGCCTTCCTCCATTCCCGTTCACCCCTGTGGCCGCTT GATAAGCCTTCCTCCATTCCCGTTCACCCCTGTGGCCGCTT < 41bp 1 0.0766255062883022 1 0.0361578762531281 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40863922 chr15:40863904 synonymous SNV . 0 3 hm5C_associated_SNPs_10799 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13038 DeepMRMD:1;iRNA_m5C:0.999536712157815 13039 chr15 40898643 40898643 1 + G C rs7177192 40898648 + 40898628 40898668 41 GAGGTGGGAATGAAAGAGTTCAGGTAAGTCTTTTGTGCAAA GAGGTGGGAATGAAACAGTTCAGGTAAGTCTTTTGTGCAAA < 41bp 1 0.541190442095034 1 0.35553839802742 experiment 0.917619115809933 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNL1 ENSG00000137812 CDS Human protein_coding chr15:40898648 chr15:40898643 nonsynonymous SNV 0.891 0 16 hm5C_associated_SNPs_10800 2 0 1 0 2 unknown 1 0.500231655270493 1 0.999536689459013 hm5C_site_13039 DeepMRMD:1;iRNA_m5C:0.999536689459013 not specified not specified 13040 chr15 41059598 41059598 1 + G T rs149691221 41059591 + 41059571 41059611 41 GGGGCACCCCTGTGGAGGGGCTGCTGTGGGCCCTGACCTCC GGGGCACCCCTGTGGAGGGGCTGCTGTTGGCCCTGACCTCC < 41bp 1 0.523313384906375 1 0.215825349092484 experiment 0.95337323018725 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GCHFR ENSG00000137880 UTR3 Human protein_coding chr15:41059591 chr15:41059598 . . 0 28 hm5C_associated_SNPs_10801 0 0 1 0 0 Cytosol 1 0.50023164391166 1 0.99953671217668 hm5C_site_13040 DeepMRMD:1;iRNA_m5C:0.99953671217668 13041 chr15 41099662 41099662 1 + T G rs193102973 41099671 + 41099651 41099691 41 GGCCTGACGGATTCGTACTACAACTCCCAAGAGTCTAAGCG GGCCTGACGGAGTCGTACTACAACTCCCAAGAGTCTAAGCG < 41bp 1 0.310570581155181 1 0.31285434961319 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC17;ZFYVE19 ENSG00000104129;ENSG00000166140 UTR5 Human other chr15:41099671 chr15:41099662 . . 0 12 hm5C_associated_SNPs_10803 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13041 DeepMRMD:1;iRNA_m5C:0.999536712157815 13042 chr15 41192540 41192540 1 + C T rs79536497 41192553 + 41192533 41192573 41 TGCAGGGCGACCCAGAGGCCCTGACTCTCTACCGAGAAACC TGCAGGGTGACCCAGAGGCCCTGACTCTCTACCGAGAAACC < 41bp 1 0.125908197445268 1 0.054103821516037 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192553 chr15:41192540 synonymous SNV . 0 8 hm5C_associated_SNPs_10804 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13042 DeepMRMD:1;iRNA_m5C:0.999536712157815 13043 chr15 41192558 41192558 1 + T C rs595559 41192553 + 41192533 41192573 41 TGCAGGGCGACCCAGAGGCCCTGACTCTCTACCGAGAAACC TGCAGGGCGACCCAGAGGCCCTGACCCTCTACCGAGAAACC < 41bp 1 0.0873600952040182 1 0.0716854631900787 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192553 chr15:41192558 synonymous SNV . 0 26 hm5C_associated_SNPs_10805 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13043 DeepMRMD:1;iRNA_m5C:0.999536712157815 13044 chr15 41245676 41245676 1 + G A rs11557249 41245677 + 41245657 41245697 41 TGGGGGGCGCTCAGCTGGAGCTACCGAGCGGTGCCAGGCCA TGGGGGGCGCTCAGCTGGAACTACCGAGCGGTGCCAGGCCA < 41bp 1 0.443459877151342 1 0.157680153846741 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHAC1 ENSG00000128965 CDS Human protein_coding chr15:41245677 chr15:41245676 synonymous SNV . 0 20 hm5C_associated_SNPs_10806 0 0 0 0 0 nucleoplasm 1 0.500231643921084 1 0.999536712157833 hm5C_site_13044 DeepMRMD:1;iRNA_m5C:0.999536712157833 13045 chr15 41245684 41245684 1 + G A rs549813567 41245677 + 41245657 41245697 41 TGGGGGGCGCTCAGCTGGAGCTACCGAGCGGTGCCAGGCCA TGGGGGGCGCTCAGCTGGAGCTACCGAACGGTGCCAGGCCA < 41bp 1 0.385332732392925 1 0.129731446504593 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHAC1 ENSG00000128965 CDS Human protein_coding chr15:41245677 chr15:41245684 nonsynonymous SNV 0.629 0 28 hm5C_associated_SNPs_10807 0 0 1 0 0 nucleoplasm 1 0.500231643919584 1 0.999536712160832 hm5C_site_13045 DeepMRMD:1;iRNA_m5C:0.999536712160832 13046 chr15 41245692 41245692 1 + A G rs201335601 41245677 + 41245657 41245697 41 TGGGGGGCGCTCAGCTGGAGCTACCGAGCGGTGCCAGGCCA TGGGGGGCGCTCAGCTGGAGCTACCGAGCGGTGCCGGGCCA < 41bp 1 0.429099553576263 1 0.173999488353729 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHAC1 ENSG00000128965 CDS Human protein_coding chr15:41245677 chr15:41245692 nonsynonymous SNV 0.998 1 36 hm5C_associated_SNPs_10808 0 0 1 0 0 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_13046 DeepMRMD:1;iRNA_m5C:0.999536712157815 13047 chr15 41554991 41554991 1 + T C rs145600828 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCGAACTCTGGCTCATTTCCGC < 41bp 1 0.220174249956939 1 0.215774059295654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41554991 synonymous SNV . 0 27 hm5C_associated_SNPs_10809 0 0 1 0 2 Ribosome 1 0.50021331082469 1 0.99957337835062 hm5C_site_13047 DeepMRMD:1;iRNA_m5C:0.99957337835062 13048 chr15 41571609 41571609 1 + C A rs141877975 41571595 + 41571575 41571615 41 ATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGCGGTCTA ATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGAGGTCTA < 41bp 1 0.183097768273294 1 0.136694014072418 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CHP1 ENSG00000187446 UTR3 Human protein_coding chr15:41571595 chr15:41571609 . . 0 35 hm5C_associated_SNPs_10810 0 0 0 0 1 Ribosome 1 0.500231643921996 1 0.999536712156008 hm5C_site_13048 DeepMRMD:1;iRNA_m5C:0.999536712156008 13049 chr15 41571613 41571613 1 + C T rs147120669 41571595 + 41571575 41571615 41 ATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGCGGTCTA ATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGCGGTTTA < 41bp 1 0.194700138760234 1 0.106640517711639 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CHP1 ENSG00000187446 UTR3 Human protein_coding chr15:41571595 chr15:41571613 . . 0 39 hm5C_associated_SNPs_10811 0 0 1 1 1 Ribosome 1 0.500231643921103 1 0.999536712157795 hm5C_site_13049 DeepMRMD:1;iRNA_m5C:0.999536712157795 13050 chr15 41591463 41591463 1 + G A rs141502590 41591474 + 41591454 41591494 41 ATTACAGGCGCGCACCACCACGCTCAGCCTGATTTCTAGGC ATTACAGGCACGCACCACCACGCTCAGCCTGATTTCTAGGC < 41bp 1 0.371755032795297 1 0.0317431092262268 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OIP5-AS1 ENSG00000247556 ncRNA_exonic Human processed_transcript chr15:41591474 chr15:41591463 . . 0 10 hm5C_associated_SNPs_10813 0 0 1 0 0 unknown 1 0.500231645259406 1 0.999536709481187 hm5C_site_13050 DeepMRMD:1;iRNA_m5C:0.999536709481187 13051 chr15 41591463 41591463 1 + G A rs141502590 41591476 + 41591456 41591496 41 TACAGGCGCGCACCACCACGCTCAGCCTGATTTCTAGGCTG TACAGGCACGCACCACCACGCTCAGCCTGATTTCTAGGCTG < 41bp 1 0.669536949178361 1 0.0934792459011078 experiment 0.660926101643279 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OIP5-AS1 ENSG00000247556 ncRNA_exonic Human processed_transcript chr15:41591476 chr15:41591463 . . 0 8 hm5C_associated_SNPs_10814 0 0 1 0 0 unknown 1 0.500231643922375 1 0.99953671215525 hm5C_site_13051 DeepMRMD:1;iRNA_m5C:0.99953671215525 13052 chr15 41591475 41591475 1 + G A rs80024738 41591474 + 41591454 41591494 41 ATTACAGGCGCGCACCACCACGCTCAGCCTGATTTCTAGGC ATTACAGGCGCGCACCACCACACTCAGCCTGATTTCTAGGC < 41bp 1 0.360705395045847 1 0.0324864387512207 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OIP5-AS1 ENSG00000247556 ncRNA_exonic Human processed_transcript chr15:41591474 chr15:41591475 . . 0 22 hm5C_associated_SNPs_10815 0 0 1 0 0 unknown 1 0.500231643925464 1 0.999536712149071 hm5C_site_13052 DeepMRMD:1;iRNA_m5C:0.999536712149071 13053 chr15 41672384 41672384 1 + A G rs7168431 41672364 + 41672344 41672384 41 TTTTGGGAATGCGAAGGGGCCTCATTTTGGCTGAAGATTAA TTTTGGGAATGCGAAGGGGCCTCATTTTGGCTGAAGATTAG < 41bp 1 0.314000967131221 1 0.0690795481204987 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41672364 chr15:41672384 synonymous SNV . 0 41 hm5C_associated_SNPs_10817 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_13053 DeepMRMD:1;iRNA_m5C:0.999536712157815 13054 chr15 41786350 41786350 1 + G A rs548638308 41786343 + 41786323 41786363 41 CCCCAACGGGCTTCCGCGGGCTCCCCCGGCCCCGGTGATCC CCCCAACGGGCTTCCGCGGGCTCCCCCAGCCCCGGTGATCC < 41bp 1 0.283003817375799 1 0.0967272818088531 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ITPKA ENSG00000137825 CDS Human protein_coding chr15:41786343 chr15:41786350 synonymous SNV . 0 28 hm5C_associated_SNPs_10818 0 0 1 0 0 chromatin 1 0.500231644165721 1 0.999536711668559 hm5C_site_13054 DeepMRMD:1;iRNA_m5C:0.999536711668559 13055 chr15 41786350 41786350 1 + G A rs548638308 41786345 + 41786325 41786365 41 CCAACGGGCTTCCGCGGGCTCCCCCGGCCCCGGTGATCCCT CCAACGGGCTTCCGCGGGCTCCCCCAGCCCCGGTGATCCCT < 41bp 1 0.288438680811593 1 0.104119628667831 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ITPKA ENSG00000137825 CDS Human protein_coding chr15:41786345 chr15:41786350 synonymous SNV . 0 26 hm5C_associated_SNPs_10819 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13055 DeepMRMD:1;iRNA_m5C:0.999536712157815 13056 chr15 41786350 41786350 1 + G A rs548638308 41786346 + 41786326 41786366 41 CAACGGGCTTCCGCGGGCTCCCCCGGCCCCGGTGATCCCTC CAACGGGCTTCCGCGGGCTCCCCCAGCCCCGGTGATCCCTC < 41bp 1 0.565365037659503 1 0.479962229728699 experiment 0.869269924680993 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ITPKA ENSG00000137825 CDS Human protein_coding chr15:41786346 chr15:41786350 synonymous SNV . 0 25 hm5C_associated_SNPs_10820 0 0 1 0 0 chromatin 1 0.500231643920087 1 0.999536712159826 hm5C_site_13056 DeepMRMD:1;iRNA_m5C:0.999536712159826 13057 chr15 41786350 41786350 1 + G A rs548638308 41786347 + 41786327 41786367 41 AACGGGCTTCCGCGGGCTCCCCCGGCCCCGGTGATCCCTCA AACGGGCTTCCGCGGGCTCCCCCAGCCCCGGTGATCCCTCA < 41bp 1 0.524654111787479 1 0.741327583789825 experiment 0.950691776425041 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ITPKA ENSG00000137825 CDS Human protein_coding chr15:41786347 chr15:41786350 synonymous SNV . 0 24 hm5C_associated_SNPs_10821 0 0 1 0 0 chromatin 1 0.500231643921092 0.51734483242035 0.999536712157815 hm5C_site_13057 DeepMRMD:0.51734483242035;iRNA_m5C:0.999536712157815 13058 chr15 41786350 41786350 1 + G A rs548638308 41786348 + 41786328 41786368 41 ACGGGCTTCCGCGGGCTCCCCCGGCCCCGGTGATCCCTCAG ACGGGCTTCCGCGGGCTCCCCCAGCCCCGGTGATCCCTCAG < 41bp 1 0.393730741356711 1 0.614978969097137 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ITPKA ENSG00000137825 CDS Human protein_coding chr15:41786348 chr15:41786350 synonymous SNV . 0 23 hm5C_associated_SNPs_10822 0 0 1 0 0 chromatin 1 0.500231643921092 0.770042061805726 0.999536712157816 hm5C_site_13058 DeepMRMD:0.770042061805726;iRNA_m5C:0.999536712157816 13059 chr15 41786350 41786350 1 + G A rs548638308 41786349 + 41786329 41786369 41 CGGGCTTCCGCGGGCTCCCCCGGCCCCGGTGATCCCTCAGC CGGGCTTCCGCGGGCTCCCCCAGCCCCGGTGATCCCTCAGC < 41bp 1 0.39647064404025 1 0.598620653152466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ITPKA ENSG00000137825 CDS Human protein_coding chr15:41786349 chr15:41786350 synonymous SNV . 0 22 hm5C_associated_SNPs_10823 0 0 1 0 0 chromatin 1 0.500231643921092 0.802758693695068 0.999536712157815 hm5C_site_13059 DeepMRMD:0.802758693695068;iRNA_m5C:0.999536712157815 13060 chr15 41854885 41854885 1 + C G rs56363203 41854884 + 41854864 41854904 41 AACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTT AACTACGAAGATCGGGGGACCGGCTCCCTCTCCATCTGTTT < 41bp 1 0.181486392407202 1 0.218768626451492 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854884 chr15:41854885 synonymous SNV . 0 22 hm5C_associated_SNPs_10824 0 0 0 0 1 Ribosome 1 0.500231644300807 1 0.999536711398387 hm5C_site_13060 DeepMRMD:1;iRNA_m5C:0.999536711398387 13061 chr15 42059342 42059342 1 + T C rs71472501 42059348 + 42059328 42059368 41 TATAGCTGCCAAAGTTGGGTCAGTTGGACACAAAATGAACT TATAGCTGCCAAAGCTGGGTCAGTTGGACACAAAATGAACT < 41bp 1 0.0523404012345572 1 0.124253034591675 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42059348 chr15:42059342 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_10825 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13061 DeepMRMD:1;iRNA_m5C:0.999536712157815 13062 chr15 42135382 42135382 1 + G A rs182470284 42135392 + 42135372 42135412 41 GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTG < 41bp 1 0.0493866622621813 1 0.0466458797454834 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 intronic Human other chr15:42135392 chr15:42135382 . . 0 11 hm5C_associated_SNPs_10826 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13062 DeepMRMD:1;iRNA_m5C:0.999536712157815 13063 chr15 42135382 42135382 1 + G A rs182470284 42135395 + 42135375 42135415 41 TTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGA TTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGA < 41bp 1 0.140200228708162 1 0.726044893264771 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 intronic Human other chr15:42135395 chr15:42135382 . . 0 8 hm5C_associated_SNPs_10827 0 0 0 0 0 unknown 1 0.500231643921092 0.547910213470458 0.999536712157815 hm5C_site_13063 DeepMRMD:0.547910213470458;iRNA_m5C:0.999536712157815 13064 chr15 42579984 42579984 1 + G A rs16973008 42579991 + 42579971 42580011 41 GATTTGAAGTTCCGGATGTCCTCACAAGCAAGCCAAGCACT GATTTGAAGTTCCAGATGTCCTCACAAGCAAGCCAAGCACT < 41bp 1 0.213339644547194 1 0.113998740911484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GANC ENSG00000214013 CDS Human protein_coding chr15:42579991 chr15:42579984 synonymous SNV . 0 14 hm5C_associated_SNPs_10828 0 0 0 0 2 chromatin 1 0.500231682355495 1 0.99953663528901 hm5C_site_13064 DeepMRMD:1;iRNA_m5C:0.99953663528901 13065 chr15 42841045 42841045 1 + G A rs200759756 42841025 + 42841005 42841045 41 CGCGCCGTGCGTTCGCCCTGCGATCCCGCTCACTCTTGGCG CGCGCCGTGCGTTCGCCCTGCGATCCCGCTCACTCTTGGCA < 41bp 1 0.15786160624113 1 0.19023934006691 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HAUS2 ENSG00000137814 UTR5 Human protein_coding chr15:42841025 chr15:42841045 . . 0 41 hm5C_associated_SNPs_10829 0 0 1 0 0 Ribosome 1 0.500231680878806 1 0.999536638242388 hm5C_site_13065 DeepMRMD:1;iRNA_m5C:0.999536638242388 13066 chr15 42841045 42841045 1 + G A rs200759756 42841030 + 42841010 42841050 41 CGTGCGTTCGCCCTGCGATCCCGCTCACTCTTGGCGCCTTC CGTGCGTTCGCCCTGCGATCCCGCTCACTCTTGGCACCTTC < 41bp 1 0.424057561822025 1 0.155815213918686 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HAUS2 ENSG00000137814 UTR5 Human protein_coding chr15:42841030 chr15:42841045 . . 0 36 hm5C_associated_SNPs_10830 0 0 1 0 0 Ribosome 1 0.500534931854402 1 0.998930136291196 hm5C_site_13066 DeepMRMD:1;iRNA_m5C:0.998930136291196 13067 chr15 42974474 42974474 1 + G A rs570324067 42974490 + 42974470 42974510 41 TGGTGCACCTGCAGCTCCTGCGGAGACACACTCTTCGGGCA TGGTACACCTGCAGCTCCTGCGGAGACACACTCTTCGGGCA < 41bp 1 0.322078704589256 1 0.795155763626099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STARD9 ENSG00000159433 CDS Human protein_coding chr15:42974490 chr15:42974474 synonymous SNV . 0 5 hm5C_associated_SNPs_10831 0 0 1 0 0 Cytosol 1 0.500232203121161 0.409688472747802 0.999535593757679 hm5C_site_13067 DeepMRMD:0.409688472747802;iRNA_m5C:0.999535593757679 13068 chr15 43632490 43632490 1 + G T rs372787096 43632491 + 43632471 43632511 41 AGATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC AGATGTCATAAAAGAATTTTCAGATGACGGCGTCAAGTACC < 41bp 1 0.557494129261281 1 0.566618800163269 experiment 0.885011741477439 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADAL ENSG00000168803 CDS Human protein_coding chr15:43632491 chr15:43632490 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_10832 0 0 1 0 1 chromatin 1 0.500231644046859 0.866762399673462 0.999536711906282 hm5C_site_13068 DeepMRMD:0.866762399673462;iRNA_m5C:0.999536711906282 13069 chr15 43632498 43632498 1 + C T rs201947910 43632491 + 43632471 43632511 41 AGATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC AGATGTCATAAAAGAATTTGCAGATGATGGCGTCAAGTACC < 41bp 1 0.451763302050245 1 0.494767069816589 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADAL ENSG00000168803 CDS Human protein_coding chr15:43632491 chr15:43632498 synonymous SNV . 0 28 hm5C_associated_SNPs_10833 0 0 1 0 1 chromatin 1 0.500231672211248 1 0.999536655577504 hm5C_site_13069 DeepMRMD:1;iRNA_m5C:0.999536655577504 13070 chr15 43820881 43820881 1 + G A rs201154982 43820897 + 43820877 43820917 41 GCCTGACACATTGCTCTCCCCTGAGCAGCCAGTGTGTCCTG GCCTAACACATTGCTCTCCCCTGAGCAGCCAGTGTGTCCTG < 41bp 1 0.549043470648216 1 0.406087398529053 experiment 0.901913058703567 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1A ENSG00000166963 CDS Human protein_coding chr15:43820897 chr15:43820881 nonsynonymous SNV 0.899 1 5 hm5C_associated_SNPs_10834 0 0 0 0 0 nucleolus 1 0.500231661971257 1 0.999536676057487 hm5C_site_13070 DeepMRMD:1;iRNA_m5C:0.999536676057487 13071 chr15 43822459 43822459 1 + C G rs554112864 43822450 + 43822430 43822470 41 GCCCTCCCTTCCCCAAGGATCCACTCCCCCAGCTCCTTTAG GCCCTCCCTTCCCCAAGGATCCACTCCCCGAGCTCCTTTAG < 41bp 1 0.0632671976928074 1 0.0864318013191223 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1A ENSG00000166963 UTR3 Human protein_coding chr15:43822450 chr15:43822459 . . 0 30 hm5C_associated_SNPs_10835 0 0 0 2 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_13071 DeepMRMD:1;iRNA_m5C:0.999536712157815 13072 chr15 44159077 44159077 1 + C T rs145208595 44159067 + 44159047 44159087 41 AGCTCCTGACCTCAGGTGATCTGCCCGCCTCGGCCTCCAAA AGCTCCTGACCTCAGGTGATCTGCCCGCCTTGGCCTCCAAA < 41bp 1 0.526324272204382 1 0.141729533672333 experiment 0.947351455591236 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR76 ENSG00000092470 UTR3 Human protein_coding chr15:44159067 chr15:44159077 . . 0 31 hm5C_associated_SNPs_10836 0 0 1 0 0 chromatin 1 0.500231643955054 1 0.999536712089891 hm5C_site_13072 DeepMRMD:1;iRNA_m5C:0.999536712089891 13073 chr15 44159077 44159077 1 + C T rs145208595 44159070 + 44159050 44159090 41 TCCTGACCTCAGGTGATCTGCCCGCCTCGGCCTCCAAAAGT TCCTGACCTCAGGTGATCTGCCCGCCTTGGCCTCCAAAAGT < 41bp 1 0.41024336580798 1 0.0431365072727203 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR76 ENSG00000092470 UTR3 Human protein_coding chr15:44159070 chr15:44159077 . . 0 28 hm5C_associated_SNPs_10837 0 0 1 0 0 chromatin 1 0.500231643912758 1 0.999536712174484 hm5C_site_13073 DeepMRMD:1;iRNA_m5C:0.999536712174484 13074 chr15 44159077 44159077 1 + C T rs145208595 44159071 + 44159051 44159091 41 CCTGACCTCAGGTGATCTGCCCGCCTCGGCCTCCAAAAGTG CCTGACCTCAGGTGATCTGCCCGCCTTGGCCTCCAAAAGTG < 41bp 1 0.528550236104225 1 0.149966925382614 experiment 0.94289952779155 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR76 ENSG00000092470 UTR3 Human protein_coding chr15:44159071 chr15:44159077 . . 0 27 hm5C_associated_SNPs_10838 0 0 1 0 0 chromatin 1 0.500232235976372 1 0.999535528047257 hm5C_site_13074 DeepMRMD:1;iRNA_m5C:0.999535528047257 13075 chr15 44159077 44159077 1 + C T rs145208595 44159072 + 44159052 44159092 41 CTGACCTCAGGTGATCTGCCCGCCTCGGCCTCCAAAAGTGC CTGACCTCAGGTGATCTGCCCGCCTTGGCCTCCAAAAGTGC < 41bp 1 0.525620361563458 1 0.156104505062103 experiment 0.948759276873083 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR76 ENSG00000092470 UTR3 Human protein_coding chr15:44159072 chr15:44159077 . . 0 26 hm5C_associated_SNPs_10839 0 0 1 0 0 chromatin 1 0.500231642494507 1 0.999536715010986 hm5C_site_13075 DeepMRMD:1;iRNA_m5C:0.999536715010986 13076 chr15 44159077 44159077 1 + C T rs145208595 44159074 + 44159054 44159094 41 GACCTCAGGTGATCTGCCCGCCTCGGCCTCCAAAAGTGCTG GACCTCAGGTGATCTGCCCGCCTTGGCCTCCAAAAGTGCTG < 41bp 1 0.217949746790965 1 0.0799094140529633 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR76 ENSG00000092470 UTR3 Human protein_coding chr15:44159074 chr15:44159077 . . 0 24 hm5C_associated_SNPs_10840 0 0 1 0 0 chromatin 1 0.500231644477945 1 0.999536711044111 hm5C_site_13076 DeepMRMD:1;iRNA_m5C:0.999536711044111 13077 chr15 44159077 44159077 1 + C T rs145208595 44159075 + 44159055 44159095 41 ACCTCAGGTGATCTGCCCGCCTCGGCCTCCAAAAGTGCTGG ACCTCAGGTGATCTGCCCGCCTTGGCCTCCAAAAGTGCTGG < 41bp 1 0.635141709708372 1 0.13001024723053 experiment 0.729716580583256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR76 ENSG00000092470 UTR3 Human protein_coding chr15:44159075 chr15:44159077 . . 0 23 hm5C_associated_SNPs_10841 0 0 1 0 0 chromatin 1 0.500231643921096 1 0.999536712157809 hm5C_site_13077 DeepMRMD:1;iRNA_m5C:0.999536712157809 13078 chr15 44159077 44159077 1 + C T rs145208595 44159080 + 44159060 44159100 41 AGGTGATCTGCCCGCCTCGGCCTCCAAAAGTGCTGGAATTA AGGTGATCTGCCCGCCTTGGCCTCCAAAAGTGCTGGAATTA < 41bp 1 0.157437437870688 1 0.257721990346909 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR76 ENSG00000092470 UTR3 Human protein_coding chr15:44159080 chr15:44159077 . . 0 18 hm5C_associated_SNPs_10842 0 0 1 0 0 chromatin 1 0.500231643921084 1 0.999536712157833 hm5C_site_13078 DeepMRMD:1;iRNA_m5C:0.999536712157833 13079 chr15 44581094 44581094 1 + A C rs530306718 44581074 + 44581054 44581094 41 GGACCTGCGGCTTGCGGCCCCGCCCCCTTCTCCGGCTCGCA GGACCTGCGGCTTGCGGCCCCGCCCCCTTCTCCGGCTCGCC < 41bp 1 0.489764360944094 1 0.280296623706818 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CASC4 ENSG00000166734 UTR5 Human protein_coding chr15:44581074 chr15:44581094 . . 0 41 hm5C_associated_SNPs_10843 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13079 DeepMRMD:1;iRNA_m5C:0.999536712157815 13080 chr15 44581094 44581094 1 + A C rs530306718 44581076 + 44581056 44581096 41 ACCTGCGGCTTGCGGCCCCGCCCCCTTCTCCGGCTCGCAGC ACCTGCGGCTTGCGGCCCCGCCCCCTTCTCCGGCTCGCCGC < 41bp 1 0.487599124224511 1 0.0347970426082611 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CASC4 ENSG00000166734 UTR5 Human protein_coding chr15:44581076 chr15:44581094 . . 0 39 hm5C_associated_SNPs_10844 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13080 DeepMRMD:1;iRNA_m5C:0.999536712157815 13081 chr15 44581094 44581094 1 + A C rs530306718 44581077 + 44581057 44581097 41 CCTGCGGCTTGCGGCCCCGCCCCCTTCTCCGGCTCGCAGCC CCTGCGGCTTGCGGCCCCGCCCCCTTCTCCGGCTCGCCGCC < 41bp 1 0.461867001073369 1 0.0672179758548737 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CASC4 ENSG00000166734 UTR5 Human protein_coding chr15:44581077 chr15:44581094 . . 0 38 hm5C_associated_SNPs_10845 0 0 1 0 0 Ribosome 1 0.5002316439208 1 0.999536712158401 hm5C_site_13081 DeepMRMD:1;iRNA_m5C:0.999536712158401 13082 chr15 44581094 44581094 1 + A C rs530306718 44581078 + 44581058 44581098 41 CTGCGGCTTGCGGCCCCGCCCCCTTCTCCGGCTCGCAGCCG CTGCGGCTTGCGGCCCCGCCCCCTTCTCCGGCTCGCCGCCG < 41bp 1 0.389317578859454 1 0.0521951019763947 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CASC4 ENSG00000166734 UTR5 Human protein_coding chr15:44581078 chr15:44581094 . . 0 37 hm5C_associated_SNPs_10846 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13082 DeepMRMD:1;iRNA_m5C:0.999536712157815 13083 chr15 44581094 44581094 1 + A C rs530306718 44581079 + 44581059 44581099 41 TGCGGCTTGCGGCCCCGCCCCCTTCTCCGGCTCGCAGCCGA TGCGGCTTGCGGCCCCGCCCCCTTCTCCGGCTCGCCGCCGA < 41bp 1 0.248708217711046 1 0.0600190162658691 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CASC4 ENSG00000166734 UTR5 Human protein_coding chr15:44581079 chr15:44581094 . . 0 36 hm5C_associated_SNPs_10847 0 0 1 0 0 Ribosome 1 0.500231643911787 1 0.999536712176426 hm5C_site_13083 DeepMRMD:1;iRNA_m5C:0.999536712176426 13084 chr15 44581094 44581094 1 + A C rs530306718 44581080 + 44581060 44581100 41 GCGGCTTGCGGCCCCGCCCCCTTCTCCGGCTCGCAGCCGAC GCGGCTTGCGGCCCCGCCCCCTTCTCCGGCTCGCCGCCGAC < 41bp 1 0.467281985268063 1 0.235817611217499 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CASC4 ENSG00000166734 UTR5 Human protein_coding chr15:44581080 chr15:44581094 . . 0 35 hm5C_associated_SNPs_10848 0 0 1 0 0 Ribosome 1 0.500231643921122 1 0.999536712157755 hm5C_site_13084 DeepMRMD:1;iRNA_m5C:0.999536712157755 13085 chr15 44673140 44673140 1 + G T rs140734894 44673143 + 44673123 44673163 41 CTAAAGCAGGCTACCAAGGACAGAGTCAGTGATTTCCATAA CTAAAGCAGGCTACCAATGACAGAGTCAGTGATTTCCATAA < 41bp 1 0.626766615860074 1 0.394106030464172 experiment 0.746466768279853 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CASC4 ENSG00000166734 CDS Human protein_coding chr15:44673143 chr15:44673140 nonsynonymous SNV 0.992 3 18 hm5C_associated_SNPs_10849 0 0 1 0 1 Ribosome 1 0.500231643952938 1 0.999536712094123 hm5C_site_13085 DeepMRMD:1;iRNA_m5C:0.999536712094123 13086 chr15 44817537 44817537 1 + A T rs75554011 44817553 + 44817533 44817573 41 TGCTATATGAAAATAGTCTTCAAGCCTTGGTTCTCTAATGC TGCTTTATGAAAATAGTCTTCAAGCCTTGGTTCTCTAATGC < 41bp 1 0.274885188623066 1 0.115152597427368 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTDSPL2 ENSG00000137770 UTR3 Human protein_coding chr15:44817553 chr15:44817537 . . 0 5 hm5C_associated_SNPs_10850 0 0 1 0 0 Nucleus 1 0.500231717745237 1 0.999536564509526 hm5C_site_13086 DeepMRMD:1;iRNA_m5C:0.999536564509526 13087 chr15 45009903 45009903 1 + G A rs576157768 45009886 + 45009866 45009906 41 TTGATATGCTTATACACTTACACTTTATGCACAAAATGTAG TTGATATGCTTATACACTTACACTTTATGCACAAAATATAG < 41bp 1 0.0762510505124751 1 0.0853982269763947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control B2M ENSG00000166710 splicing Human protein_coding chr15:45009886 chr15:45009903 . . 0 38 hm5C_associated_SNPs_10851 0 0 1 0 1 Ribosome 1 0.500232391803841 1 0.999535216392318 hm5C_site_13087 DeepMRMD:1;iRNA_m5C:0.999535216392318 13088 chr15 45427468 45427468 1 + T C rs58074044 45427487 + 45427467 45427507 41 GTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG GCCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG < 41bp 1 0.482927703047277 1 0.451162904500961 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427487 chr15:45427468 synonymous SNV . 0 2 hm5C_associated_SNPs_10852 0 0 0 0 1 chromatin 1 0.50023162842762 1 0.999536743144759 hm5C_site_13088 DeepMRMD:1;iRNA_m5C:0.999536743144759 13089 chr15 45427477 45427477 1 + T C rs113882937 45427487 + 45427467 45427507 41 GTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG GTCCCAGCAACCCCCGGGACCCGGTGAGGCGGGGAAGGCGG < 41bp 1 0.462138219966657 1 0.390214711427689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427487 chr15:45427477 synonymous SNV . 0 11 hm5C_associated_SNPs_10853 0 0 0 0 1 chromatin 1 0.500231643819269 1 0.999536712361462 hm5C_site_13089 DeepMRMD:1;iRNA_m5C:0.999536712361462 13090 chr15 45427488 45427488 1 + C T rs201314048 45427487 + 45427467 45427507 41 GTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG GTCCCAGCAATCCCCGGGACCTGGTGAGGCGGGGAAGGCGG < 41bp 1 0.691672676208703 1 0.311498761177063 experiment 0.616654647582594 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427487 chr15:45427488 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_10854 0 0 0 0 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_13090 DeepMRMD:1;iRNA_m5C:0.999536712157818 13091 chr15 49448083 49448083 1 + C T rs60899981 49448103 + 49448083 49448123 41 CCTGGGTAAAGGAGCAGTCTCCTCCCTTGCTTGGGACTCTG TCTGGGTAAAGGAGCAGTCTCCTCCCTTGCTTGGGACTCTG < 41bp 1 0.093365061994849 1 0.122019410133362 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALK2 ENSG00000156958 UTR5 Human protein_coding chr15:49448103 chr15:49448083 . . 0 1 hm5C_associated_SNPs_10857 0 0 1 0 0 Nucleus 1 0.500231643921082 1 0.999536712157836 hm5C_site_13091 DeepMRMD:1;iRNA_m5C:0.999536712157836 13092 chr15 50474486 50474486 1 + T A rs550411679 50474472 + 50474452 50474492 41 CGGTACCTGCAGCGGAGGAGCTCTGTCTTCCCCTTCATCTC CGGTACCTGCAGCGGAGGAGCTCTGTCTTCCCCTACATCTC < 41bp 1 0.433732383280139 1 0.16103321313858 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC27A2 ENSG00000104043;ENSG00000140284 UTR5 Human other chr15:50474472 chr15:50474486 . . 0 35 hm5C_associated_SNPs_10858 0 0 1 0 0 Ribosome 1 0.500231643921088 1 0.999536712157824 hm5C_site_13092 DeepMRMD:1;iRNA_m5C:0.999536712157824 13093 chr15 50782576 50782576 1 + T A rs200463480 50782564 + 50782544 50782584 41 TCATCTGCACCTCCTTCCACCCCTCCAACTCATAAAGCCAA TCATCTGCACCTCCTTCCACCCCTCCAACTCAAAAAGCCAA < 41bp 1 0.0364926471303561 1 0.237153500318527 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50782564 chr15:50782576 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_10859 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13093 DeepMRMD:1;iRNA_m5C:0.999536712157815 13094 chr15 50789423 50789423 1 + G A rs11857513 50789404 + 50789384 50789424 41 AGAAATCTGGAAGTTACCACCTGTGCTTTTAGTGCATCTGA AGAAATCTGGAAGTTACCACCTGTGCTTTTAGTGCATCTAA < 41bp 1 0.325185221829601 1 0.369677722454071 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50789404 chr15:50789423 synonymous SNV . 0 40 hm5C_associated_SNPs_10860 0 0 0 0 1 Ribosome 1 0.500231643921186 1 0.999536712157629 hm5C_site_13094 DeepMRMD:1;iRNA_m5C:0.999536712157629 13095 chr15 52338070 52338070 1 + G A rs149313769 52338086 + 52338066 52338106 41 TTGTGGTGAGCTGGAGCCACCTGATCACTAACAAAAGACAT TTGTAGTGAGCTGGAGCCACCTGATCACTAACAAAAGACAT < 41bp 1 0.436444675018115 1 0.204759299755096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK6 ENSG00000069956 UTR5 Human protein_coding chr15:52338086 chr15:52338070 . . 0 5 hm5C_associated_SNPs_10861 0 0 0 0 1 Ribosome 1 0.500231643921242 1 0.999536712157515 hm5C_site_13095 DeepMRMD:1;iRNA_m5C:0.999536712157515 13096 chr15 57210522 57210522 1 + G A rs548061877 57210508 - 57210488 57210528 41 CTGGTTCTCGGCCCCCGAAGCGGAGCGACGGAGACACAGCT CTGGTTTTCGGCCCCCGAAGCGGAGCGACGGAGACACAGCT < 41bp 1 0.608930441448999 1 0.950881063938141 experiment 0.782139117102001 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control LOC145783 ENSG00000137871 UTR5 Human protein_coding chr15:57210508 chr15:57210522 . . 0 7 hm5C_associated_SNPs_10862 0 0 0 0 0 unknown 1 0.500231643900548 0.098237872123718 0.999536712198904 hm5C_site_13096 DeepMRMD:0.098237872123718;iRNA_m5C:0.999536712198904 13097 chr15 57545643 57545643 1 + G A rs143889768 57545632 + 57545612 57545652 41 CAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC CAATTCAAACTATGGAGGATCAAGCCTTGTTACAAGCAGTC < 41bp 1 0.210066284343043 1 0.257663667201996 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57545632 chr15:57545643 nonsynonymous SNV 0.997 0 32 hm5C_associated_SNPs_10863 0 0 1 0 1 Cytosol 1 0.500231594913466 1 0.999536810173069 hm5C_site_13097 DeepMRMD:1;iRNA_m5C:0.999536810173069 13098 chr15 57554344 57554344 1 + T G rs36060670 57554338 + 57554318 57554358 41 CAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCA CAGTCTCAATGGCAATCATTCAGTCCGGTCTAGTACAGTCA < 41bp 1 0.136617007405897 1 0.121703535318375 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554338 chr15:57554344 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_10864 1 0 1 0 2 Cytosol 1 0.500231537376374 1 0.999536925247252 hm5C_site_13098 DeepMRMD:1;iRNA_m5C:0.999536925247252 not provided not provided 13099 chr15 57554344 57554344 1 + T G rs36060670 57554343 + 57554323 57554363 41 TCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT TCAATGGCAATCATTCAGTCCGGTCTAGTACAGTCACTACT < 41bp 1 0.117407966315703 1 0.0515216588973999 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554343 chr15:57554344 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_10865 1 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_13099 DeepMRMD:1;iRNA_m5C:0.999536712157814 not provided not provided 13100 chr15 57554344 57554344 1 + T G rs36060670 57554353 + 57554333 57554373 41 TCATTCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAG TCATTCAGTCCGGTCTAGTACAGTCACTACTTCAAGCACAG < 41bp 1 0.192633944132576 1 0.0906772315502167 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554353 chr15:57554344 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_10866 1 0 1 0 2 Cytosol 1 0.500231643925717 1 0.999536712148565 hm5C_site_13100 DeepMRMD:1;iRNA_m5C:0.999536712148565 not provided not provided 13101 chr15 57554344 57554344 1 + T G rs36060670 57554357 + 57554337 57554377 41 TCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCT TCAGTCCGGTCTAGTACAGTCACTACTTCAAGCACAGACCT < 41bp 1 0.497205648844434 1 0.133619964122772 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554357 chr15:57554344 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_10867 1 0 1 0 2 Cytosol 1 0.500234286834502 1 0.999531426330996 hm5C_site_13101 DeepMRMD:1;iRNA_m5C:0.999531426330996 not provided not provided 13102 chr15 57554344 57554344 1 + T G rs36060670 57554359 + 57554339 57554379 41 AGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCTGA AGTCCGGTCTAGTACAGTCACTACTTCAAGCACAGACCTGA < 41bp 1 0.356112003809777 1 0.0685617923736572 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554359 chr15:57554344 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_10868 1 0 1 0 2 Cytosol 1 0.500231739444181 1 0.999536521111638 hm5C_site_13102 DeepMRMD:1;iRNA_m5C:0.999536521111638 not provided not provided 13103 chr15 57579223 57579223 1 + A C rs1045665 57579221 + 57579201 57579241 41 TGCTTTATTTCTAATAATAACCAAGACTTTTCAAGCTTCTA TGCTTTATTTCTAATAATAACCCAGACTTTTCAAGCTTCTA < 41bp 1 0.139749378381659 1 0.120644479990005 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 UTR3 Human protein_coding chr15:57579221 chr15:57579223 . . 0 23 hm5C_associated_SNPs_10869 0 0 1 2 0 Cytosol 1 0.500231596197768 1 0.999536807604464 hm5C_site_13103 DeepMRMD:1;iRNA_m5C:0.999536807604464 13104 chr15 57579223 57579223 1 + A C rs1045665 57579222 + 57579202 57579242 41 GCTTTATTTCTAATAATAACCAAGACTTTTCAAGCTTCTAG GCTTTATTTCTAATAATAACCCAGACTTTTCAAGCTTCTAG < 41bp 1 0.370107338810031 1 0.0929438769817352 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 UTR3 Human protein_coding chr15:57579222 chr15:57579223 . . 0 22 hm5C_associated_SNPs_10870 0 0 1 2 0 Cytosol 1 0.500231645549771 1 0.999536708900457 hm5C_site_13104 DeepMRMD:1;iRNA_m5C:0.999536708900457 13105 chr15 59280153 59280153 1 + G A rs139175210 59280164 + 59280144 59280184 41 CCGACGTCTGAGGCGCAGATCGCTGGCTCTCGACGCATTAC CCGACGTCTAAGGCGCAGATCGCTGGCTCTCGACGCATTAC < 41bp 1 0.399651546704926 1 0.100083619356155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF111 ENSG00000157450 UTR5 Human protein_coding chr15:59280164 chr15:59280153 . . 0 10 hm5C_associated_SNPs_10873 0 0 1 0 0 Ribosome 1 0.500231645825114 1 0.999536708349771 hm5C_site_13105 DeepMRMD:1;iRNA_m5C:0.999536708349771 13106 chr15 59280162 59280162 1 + A G rs539701947 59280164 + 59280144 59280184 41 CCGACGTCTGAGGCGCAGATCGCTGGCTCTCGACGCATTAC CCGACGTCTGAGGCGCAGGTCGCTGGCTCTCGACGCATTAC < 41bp 1 0.37426916070528 1 0.145398914813995 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF111 ENSG00000157450 UTR5 Human protein_coding chr15:59280164 chr15:59280162 . . 0 19 hm5C_associated_SNPs_10874 0 0 1 0 0 Ribosome 1 0.500231647974407 1 0.999536704051185 hm5C_site_13106 DeepMRMD:1;iRNA_m5C:0.999536704051185 13107 chr15 59348009 59348009 1 + C T rs184483062 59348026 + 59348006 59348046 41 ATGCAGCAGAAGTTGTGGACCTTACCGTTGATGAAGATGGT ATGTAGCAGAAGTTGTGGACCTTACCGTTGATGAAGATGGT < 41bp 1 0.0349640701992227 1 0.106530636548996 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF111 ENSG00000157450 CDS Human protein_coding chr15:59348026 chr15:59348009 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_10875 0 0 1 0 1 Ribosome 1 0.50023164265473 1 0.99953671469054 hm5C_site_13107 DeepMRMD:1;iRNA_m5C:0.99953671469054 13108 chr15 63009823 63009823 1 + T A rs141002416 63009833 + 63009813 63009853 41 CATCGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACC CATCGCCGCCACCCAGAATGCAGCTGTTTCCAACAAGAACC < 41bp 1 0.298660199362692 1 0.112868219614029 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009833 chr15:63009823 nonsynonymous SNV 0.985 2 11 hm5C_associated_SNPs_10876 0 0 0 0 2 Nucleus 1 0.500231643920943 1 0.999536712158114 hm5C_site_13108 DeepMRMD:1;iRNA_m5C:0.999536712158114 13109 chr15 63009823 63009823 1 + T A rs141002416 63009836 + 63009816 63009856 41 CGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACCCTG CGCCGCCACCCAGAATGCAGCTGTTTCCAACAAGAACCCTG < 41bp 1 0.0806165252791961 1 0.0349491238594055 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009836 chr15:63009823 nonsynonymous SNV 0.985 2 8 hm5C_associated_SNPs_10877 0 0 0 0 2 Nucleus 1 0.500231643921605 1 0.999536712156791 hm5C_site_13109 DeepMRMD:1;iRNA_m5C:0.999536712156791 13110 chr15 63111781 63111781 1 + G A rs143218219 63111780 + 63111760 63111800 41 TTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCA TTCTCCAAGCGAGTCGCCGGCACTGTGACAGAGCTCATCCA < 41bp 1 0.126242001360134 1 0.089093953371048 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63111780 chr15:63111781 nonsynonymous SNV 0.141 1 22 hm5C_associated_SNPs_10878 0 0 0 0 2 Nucleus 1 0.500231643921161 1 0.999536712157678 hm5C_site_13110 DeepMRMD:1;iRNA_m5C:0.999536712157678 13111 chr15 63111786 63111786 1 + G T rs146565364 63111780 + 63111760 63111800 41 TTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCA TTCTCCAAGCGAGTCGCCGGCGCTGTTACAGAGCTCATCCA < 41bp 1 0.16380973524919 1 0.264760226011276 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63111780 chr15:63111786 synonymous SNV . 0 27 hm5C_associated_SNPs_10879 0 0 0 0 2 Nucleus 1 0.500231643921124 1 0.999536712157753 hm5C_site_13111 DeepMRMD:1;iRNA_m5C:0.999536712157753 13112 chr15 63358174 63358174 1 + A G rs140658011 63358189 + 63358169 63358209 41 TGTCTATTCTCCAGCTGACCCTGGTTCTCTCTCTTAGCATC TGTCTGTTCTCCAGCTGACCCTGGTTCTCTCTCTTAGCATC < 41bp 1 0.543295454892044 1 0.0909456610679626 experiment 0.913409090215911 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63358189 chr15:63358174 synonymous SNV . 0 6 hm5C_associated_SNPs_10880 2 0 1 0 1 Ribosome 1 0.500231653351743 1 0.999536693296513 hm5C_site_13112 DeepMRMD:1;iRNA_m5C:0.999536693296513 Hypertrophic cardiomyopathy Hypertrophic cardiomyopathy 13113 chr15 63363737 63363737 1 + T C rs707602 63363751 + 63363731 63363771 41 TGCTACTTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCA TGCTACCTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCA < 41bp 1 0.198736680773996 1 0.0736834704875946 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM1 ENSG00000259627 ncRNA_intronic Human antisense chr15:63363751 chr15:63363737 . . 0 7 hm5C_associated_SNPs_10881 0 0 1 0 0 Ribosome 1 0.500231636038096 1 0.999536727923809 hm5C_site_13113 DeepMRMD:1;iRNA_m5C:0.999536727923809 13114 chr15 63363737 63363737 1 + T C rs707602 63363752 + 63363732 63363772 41 GCTACTTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCAA GCTACCTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCAA < 41bp 1 0.450401767770086 1 0.103426545858383 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM1 ENSG00000259627 ncRNA_intronic Human antisense chr15:63363752 chr15:63363737 . . 0 6 hm5C_associated_SNPs_10882 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_13114 DeepMRMD:1;iRNA_m5C:0.999536712157815 13115 chr15 63363737 63363737 1 + T C rs707602 63363753 + 63363733 63363773 41 CTACTTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCAAC CTACCTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCAAC < 41bp 1 0.238200157565552 1 0.065373569726944 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM1 ENSG00000259627 ncRNA_intronic Human antisense chr15:63363753 chr15:63363737 . . 0 5 hm5C_associated_SNPs_10883 0 0 1 0 0 Ribosome 1 0.500166265068314 1 0.999667469863372 hm5C_site_13115 DeepMRMD:1;iRNA_m5C:0.999667469863372 13116 chr15 63363737 63363737 1 + T C rs707602 63363754 + 63363734 63363774 41 TACTTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCAACA TACCTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCAACA < 41bp 1 0.165094684578655 1 0.0909264981746674 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM1 ENSG00000259627 ncRNA_intronic Human antisense chr15:63363754 chr15:63363737 . . 0 4 hm5C_associated_SNPs_10884 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13116 DeepMRMD:1;iRNA_m5C:0.999536712157815 13117 chr15 63363737 63363737 1 + T C rs707602 63363755 + 63363735 63363775 41 ACTTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCAACAT ACCTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCAACAT < 41bp 1 0.65617864247765 1 0.0879324972629547 experiment 0.687642715044699 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM1 ENSG00000259627 ncRNA_intronic Human antisense chr15:63363755 chr15:63363737 . . 0 3 hm5C_associated_SNPs_10885 0 0 1 0 0 Ribosome 1 0.500212762520175 1 0.999574474959649 hm5C_site_13117 DeepMRMD:1;iRNA_m5C:0.999574474959649 13118 chr15 63363750 63363750 1 + T A rs74024306 63363751 + 63363731 63363771 41 TGCTACTTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCA TGCTACTTTGAACAAAAGGACCCCCTGTGGTCTTTTGTTCA < 41bp 1 0.167326002180267 1 0.0625934898853302 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM1 ENSG00000259627 ncRNA_intronic Human antisense chr15:63363751 chr15:63363750 . . 0 20 hm5C_associated_SNPs_10886 0 0 1 0 0 Ribosome 1 0.500231643699884 1 0.999536712600233 hm5C_site_13118 DeepMRMD:1;iRNA_m5C:0.999536712600233 13119 chr15 63363750 63363750 1 + T A rs74024306 63363752 + 63363732 63363772 41 GCTACTTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCAA GCTACTTTGAACAAAAGGACCCCCTGTGGTCTTTTGTTCAA < 41bp 1 0.476884662726468 1 0.0877615809440613 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM1 ENSG00000259627 ncRNA_intronic Human antisense chr15:63363752 chr15:63363750 . . 0 19 hm5C_associated_SNPs_10887 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13119 DeepMRMD:1;iRNA_m5C:0.999536712157815 13120 chr15 63363750 63363750 1 + T A rs74024306 63363753 + 63363733 63363773 41 CTACTTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCAAC CTACTTTGAACAAAAGGACCCCCTGTGGTCTTTTGTTCAAC < 41bp 1 0.234140989444875 1 0.0444408059120178 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM1 ENSG00000259627 ncRNA_intronic Human antisense chr15:63363753 chr15:63363750 . . 0 18 hm5C_associated_SNPs_10888 0 0 1 0 0 Ribosome 1 0.500228793373654 1 0.999542413252692 hm5C_site_13120 DeepMRMD:1;iRNA_m5C:0.999542413252692 13121 chr15 63363750 63363750 1 + T A rs74024306 63363754 + 63363734 63363774 41 TACTTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCAACA TACTTTGAACAAAAGGACCCCCTGTGGTCTTTTGTTCAACA < 41bp 1 0.150152229465161 1 0.0715095698833466 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM1 ENSG00000259627 ncRNA_intronic Human antisense chr15:63363754 chr15:63363750 . . 0 17 hm5C_associated_SNPs_10889 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13121 DeepMRMD:1;iRNA_m5C:0.999536712157815 13122 chr15 63363750 63363750 1 + T A rs74024306 63363755 + 63363735 63363775 41 ACTTTGAACAAAAGGTCCCCCTGTGGTCTTTTGTTCAACAT ACTTTGAACAAAAGGACCCCCTGTGGTCTTTTGTTCAACAT < 41bp 1 0.684933896998732 1 0.0724163055419922 experiment 0.630132206002536 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM1 ENSG00000259627 ncRNA_intronic Human antisense chr15:63363755 chr15:63363750 . . 0 16 hm5C_associated_SNPs_10890 0 0 1 0 0 Ribosome 1 0.500231078547833 1 0.999537842904333 hm5C_site_13122 DeepMRMD:1;iRNA_m5C:0.999537842904333 13123 chr15 63433766 63433766 1 + G A rs2729835 63433784 + 63433764 63433804 41 AAGGAAACAAACGTATGGTTCGTGTAGAAAGCAACGGCATT AAAGAAACAAACGTATGGTTCGTGTAGAAAGCAACGGCATT < 41bp 1 0.267024137568488 1 0.0828350186347961 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LACTB ENSG00000103642 CDS Human protein_coding chr15:63433784 chr15:63433766 nonsynonymous SNV 0.998 0 3 hm5C_associated_SNPs_10891 0 1 0 0 0 Endoplasmic reticulum 1 0.500231644115782 1 0.999536711768436 hm5C_site_13123 DeepMRMD:1;iRNA_m5C:0.999536711768436 13124 chr15 63433785 63433785 1 + G A rs4775629 63433784 + 63433764 63433804 41 AAGGAAACAAACGTATGGTTCGTGTAGAAAGCAACGGCATT AAGGAAACAAACGTATGGTTCATGTAGAAAGCAACGGCATT < 41bp 1 0.228422772891657 1 0.0368681848049164 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LACTB ENSG00000103642 CDS Human protein_coding chr15:63433784 chr15:63433785 synonymous SNV . 0 22 hm5C_associated_SNPs_10892 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_13124 DeepMRMD:1;iRNA_m5C:0.999536712157815 13125 chr15 63433800 63433800 1 + G A rs61732054 63433784 + 63433764 63433804 41 AAGGAAACAAACGTATGGTTCGTGTAGAAAGCAACGGCATT AAGGAAACAAACGTATGGTTCGTGTAGAAAGCAACGACATT < 41bp 1 0.249296632745928 1 0.0710201561450958 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LACTB ENSG00000103642 CDS Human protein_coding chr15:63433784 chr15:63433800 synonymous SNV . 0 37 hm5C_associated_SNPs_10893 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921097 1 0.999536712157806 hm5C_site_13125 DeepMRMD:1;iRNA_m5C:0.999536712157806 13126 chr15 63481801 63481801 1 + G A rs202134870 63481812 + 63481792 63481832 41 TGGCTCCCCGGTCAGAGGGCCGGAGCGAGAAGATGGCGAAG TGGCTCCCCAGTCAGAGGGCCGGAGCGAGAAGATGGCGAAG < 41bp 1 0.678604892343456 1 0.611004948616028 experiment 0.642790215313089 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB8B ENSG00000166128 UTR5 Human protein_coding chr15:63481812 chr15:63481801 . . 0 10 hm5C_associated_SNPs_10896 0 0 1 0 0 Nucleus 1 0.500231643923509 0.777990102767944 0.999536712152982 hm5C_site_13126 DeepMRMD:0.777990102767944;iRNA_m5C:0.999536712152982 13127 chr15 64388275 64388275 1 + G A rs115947230 64388268 + 64388248 64388288 41 GAGACTGCCTCCGCCCTTCCCCGGCCTGGAGCCGGAGTCCG GAGACTGCCTCCGCCCTTCCCCGGCCTAGAGCCGGAGTCCG < 41bp 1 0.540640634935031 1 0.776137411594391 experiment 0.918718730129938 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64388268 chr15:64388275 synonymous SNV . 0 28 hm5C_associated_SNPs_10897 0 0 1 0 1 Ribosome 1 0.500231643921092 0.447725176811218 0.999536712157815 hm5C_site_13127 DeepMRMD:0.447725176811218;iRNA_m5C:0.999536712157815 13128 chr15 64410352 64410352 1 + A T rs186954122 64410334 + 64410314 64410354 41 AGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAAATA AGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAATTA < 41bp 1 0.0550305156308263 1 0.121585607528687 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410334 chr15:64410352 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_10898 0 0 1 0 2 Ribosome 1 0.500231233254015 1 0.99953753349197 hm5C_site_13128 DeepMRMD:1;iRNA_m5C:0.99953753349197 13129 chr15 64418397 64418397 1 + G A rs1130603 64418395 + 64418375 64418415 41 AGAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTC AGAATGGCTTCATTGTCCCTCCACCCCCGGAGAAGAGCCTC < 41bp 1 0.0608011998826184 1 0.258761823177338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418395 chr15:64418397 synonymous SNV . 0 23 hm5C_associated_SNPs_10899 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_13129 DeepMRMD:1;iRNA_m5C:0.999536712157818 13130 chr15 64418397 64418397 1 + G A rs1130603 64418396 + 64418376 64418416 41 GAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCA GAATGGCTTCATTGTCCCTCCACCCCCGGAGAAGAGCCTCA < 41bp 1 0.159650781781987 1 0.158438324928284 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418396 chr15:64418397 synonymous SNV . 0 22 hm5C_associated_SNPs_10900 0 0 1 0 1 Ribosome 1 0.500231643923991 1 0.999536712152017 hm5C_site_13130 DeepMRMD:1;iRNA_m5C:0.999536712152017 13131 chr15 64418397 64418397 1 + G A rs1130603 64418398 + 64418378 64418418 41 ATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCATA ATGGCTTCATTGTCCCTCCACCCCCGGAGAAGAGCCTCATA < 41bp 1 0.144864498668944 1 0.0439735949039459 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418398 chr15:64418397 synonymous SNV . 0 20 hm5C_associated_SNPs_10901 0 0 1 0 1 Ribosome 1 0.500231514761987 1 0.999536970476026 hm5C_site_13131 DeepMRMD:1;iRNA_m5C:0.999536970476026 13132 chr15 64434053 64434053 1 + G A rs141694206 64434067 + 64434047 64434087 41 AGTTTCGGAACCACTGAGATCGGTCCTTGATTTGATGAGAG AGTTTCAGAACCACTGAGATCGGTCCTTGATTTGATGAGAG < 41bp 1 0.435909915848618 1 0.388641148805618 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX1 ENSG00000028528 UTR3 Human protein_coding chr15:64434067 chr15:64434053 . . 0 7 hm5C_associated_SNPs_10902 0 0 1 0 0 Ribosome 1 0.500231643908974 1 0.999536712182053 hm5C_site_13132 DeepMRMD:1;iRNA_m5C:0.999536712182053 13133 chr15 64448293 64448293 1 + G A rs530126062 64448279 - 64448259 64448299 41 AAACCCCTGAAGGATGTGATCATCGCAGACTGCGGCAAGAT AAACCCTTGAAGGATGTGATCATCGCAGACTGCGGCAAGAT < 41bp 1 0.378709548511762 1 0.0371904373168945 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448279 chr15:64448293 synonymous SNV . 0 7 hm5C_associated_SNPs_10904 0 0 1 0 1 Ribosome 1 0.500231644911283 1 0.999536710177434 hm5C_site_13133 DeepMRMD:1;iRNA_m5C:0.999536710177434 13134 chr15 64967519 64967519 1 + G T rs77465580 64967515 + 64967495 64967535 41 AAACACTACCCCTACTCAGCCCCTGACTCCCTTACATGTGG AAACACTACCCCTACTCAGCCCCTTACTCCCTTACATGTGG < 41bp 1 0.0209140341585262 1 0.0458516180515289 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF609 ENSG00000180357 CDS Human protein_coding chr15:64967515 chr15:64967519 synonymous SNV . 0 25 hm5C_associated_SNPs_10905 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921081 1 0.999536712157838 hm5C_site_13134 DeepMRMD:1;iRNA_m5C:0.999536712157838 13135 chr15 64974992 64974992 1 + C A rs544345310 64975009 + 64974989 64975029 41 CAGCCCAATTCCTCTGTCTACAAGTACATGATTTTATATAG CAGACCAATTCCTCTGTCTACAAGTACATGATTTTATATAG < 41bp 1 0.212763727222332 1 0.424635112285614 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF609 ENSG00000180357 UTR3 Human protein_coding chr15:64975009 chr15:64974992 . . 0 4 hm5C_associated_SNPs_10906 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_13135 DeepMRMD:1;iRNA_m5C:0.999536712157815 13136 chr15 64975614 64975614 1 + C T rs76580542 64975595 + 64975575 64975615 41 GGAACCCTACACTTGAGAGGCTTAGGGTCACCATCTGCTCA GGAACCCTACACTTGAGAGGCTTAGGGTCACCATCTGCTTA < 41bp 1 0.134225319901759 1 0.101814776659012 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF609 ENSG00000180357 UTR3 Human protein_coding chr15:64975595 chr15:64975614 . . 0 40 hm5C_associated_SNPs_10907 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_13136 DeepMRMD:1;iRNA_m5C:0.999536712157815 13137 chr15 65157679 65157679 1 + C A rs146103082 65157697 + 65157677 65157717 41 CCCTCTCAGGCTGAGGGCACCCCAGGAACTCCTCCAAAGGA CCATCTCAGGCTGAGGGCACCCCAGGAACTCCTCCAAAGGA < 41bp 1 0.240040015994337 1 0.271415501832962 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHO2 ENSG00000241839 CDS Human protein_coding chr15:65157697 chr15:65157679 synonymous SNV . 0 3 hm5C_associated_SNPs_10908 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13137 DeepMRMD:1;iRNA_m5C:0.999536712157815 13138 chr15 66161839 66161839 1 + C T rs577327021 66161828 + 66161808 66161848 41 GGGCTCTTCACCCAGTCCGGCAGTTGAAGCTCGGCGCTCGG GGGCTCTTCACCCAGTCCGGCAGTTGAAGCTTGGCGCTCGG < 41bp 1 0.372092644151789 1 0.183308303356171 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAB11A ENSG00000103769 UTR5 Human protein_coding chr15:66161828 chr15:66161839 . . 0 32 hm5C_associated_SNPs_10909 0 0 1 0 0 Ribosome 1 0.500231643921125 1 0.999536712157751 hm5C_site_13138 DeepMRMD:1;iRNA_m5C:0.999536712157751 13139 chr15 66783610 66783610 1 + G A rs8684 66783627 + 66783607 66783647 41 TCAGTATACTGTGTGGGATACTTAGTGGTATGTCTCTTTAA TCAATATACTGTGTGGGATACTTAGTGGTATGTCTCTTTAA < 41bp 1 0.17492893988731 1 0.0416848659515381 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAP2K1 ENSG00000261351 ncRNA_intronic Human antisense chr15:66783627 chr15:66783610 . . 0 4 hm5C_associated_SNPs_10910 2 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13139 DeepMRMD:1;iRNA_m5C:0.999536712157815 Noonan syndrome Noonan syndrome 13140 chr15 66797686 66797686 1 + C A rs147940200 66797669 - 66797649 66797689 41 GCCGCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCGGA GCCTCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCGGA < 41bp 1 0.410426706053047 1 0.187331229448318 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66797669 chr15:66797686 synonymous SNV . 0 4 hm5C_associated_SNPs_10911 0 0 0 0 1 Ribosome 1 0.500231643920847 1 0.999536712158306 hm5C_site_13140 DeepMRMD:1;iRNA_m5C:0.999536712158306 13141 chr15 66797686 66797686 1 + C A rs147940200 66797670 - 66797650 66797690 41 AGCCGCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCGG AGCCTCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCGG < 41bp 1 0.223707239644744 1 0.224145740270615 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66797670 chr15:66797686 synonymous SNV . 0 5 hm5C_associated_SNPs_10912 0 0 0 0 1 Ribosome 1 0.500231643921099 1 0.999536712157801 hm5C_site_13141 DeepMRMD:1;iRNA_m5C:0.999536712157801 13142 chr15 66797686 66797686 1 + C A rs147940200 66797671 - 66797651 66797691 41 CAGCCGCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCG CAGCCTCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCG < 41bp 1 0.32862833714323 1 0.362760007381439 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66797671 chr15:66797686 synonymous SNV . 0 6 hm5C_associated_SNPs_10913 0 0 0 0 1 Ribosome 1 0.500231643921027 1 0.999536712157946 hm5C_site_13142 DeepMRMD:1;iRNA_m5C:0.999536712157946 13143 chr15 66995860 66995860 1 + C A rs547033777 66995871 + 66995851 66995891 41 CGCAGGGGGCCCCCCGAGGCCCATGTCGGAGCCAGGGGCCG CGCAGGGGGACCCCCGAGGCCCATGTCGGAGCCAGGGGCCG < 41bp 1 0.292105183842099 1 0.0880599021911621 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMAD6 ENSG00000137834 CDS Human protein_coding chr15:66995871 chr15:66995860 synonymous SNV . 0 10 hm5C_associated_SNPs_10914 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13143 DeepMRMD:1;iRNA_m5C:0.999536712157815 13144 chr15 66996307 66996307 1 + C T rs144415105 66996309 + 66996289 66996329 41 CTGGCCCGACCTGCAGCACGCCGTGGAGCTGAAGCCCCTGT CTGGCCCGACCTGCAGCATGCCGTGGAGCTGAAGCCCCTGT < 41bp 1 0.240194475135238 1 0.198065429925919 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMAD6 ENSG00000137834 CDS Human protein_coding chr15:66996309 chr15:66996307 synonymous SNV . 0 19 hm5C_associated_SNPs_10915 1 0 1 0 0 Cytosol 1 0.500232154169002 1 0.999535691661996 hm5C_site_13144 DeepMRMD:1;iRNA_m5C:0.999535691661996 Aortic valve disease 2 Aortic valve disease 2 13145 chr15 67073638 67073638 1 + C T rs145093897 67073651 + 67073631 67073671 41 CTGGACGCGCCCGGCGGCCGCGCCCTGGTCGTGCGCAAGGT CTGGACGTGCCCGGCGGCCGCGCCCTGGTCGTGCGCAAGGT < 41bp 1 0.5053890847067 1 0.401107728481293 experiment 0.989221830586599 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SMAD6 ENSG00000137834 CDS Human protein_coding chr15:67073651 chr15:67073638 nonsynonymous SNV 0.987 1 8 hm5C_associated_SNPs_10916 0 0 1 0 0 Cytosol 1 0.500231643447397 1 0.999536713105206 hm5C_site_13145 DeepMRMD:1;iRNA_m5C:0.999536713105206 13146 chr15 67358465 67358465 1 + C T rs144374592 67358461 + 67358441 67358481 41 GAGCCCAGCCCCGCCGGGGGCGCTCCTCGCCGCCCGCGCGC GAGCCCAGCCCCGCCGGGGGCGCTTCTCGCCGCCCGCGCGC < 41bp 1 0.640908122780727 1 0.183935701847076 experiment 0.718183754438546 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD3 ENSG00000166949 UTR5 Human protein_coding chr15:67358461 chr15:67358465 . . 0 25 hm5C_associated_SNPs_10918 3 0 0 0 0 Cytosol 1 0.500229030535714 1 0.999541938928573 hm5C_site_13146 DeepMRMD:1;iRNA_m5C:0.999541938928573 not specified not specified 13147 chr15 67358470 67358470 1 + C T rs36221703 67358461 + 67358441 67358481 41 GAGCCCAGCCCCGCCGGGGGCGCTCCTCGCCGCCCGCGCGC GAGCCCAGCCCCGCCGGGGGCGCTCCTCGTCGCCCGCGCGC < 41bp 1 0.578555775669953 1 0.205430567264557 experiment 0.842888448660094 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD3 ENSG00000166949 UTR5 Human protein_coding chr15:67358461 chr15:67358470 . . 0 30 hm5C_associated_SNPs_10920 3 0 0 0 0 Cytosol 1 0.500231643918478 1 0.999536712163045 hm5C_site_13147 DeepMRMD:1;iRNA_m5C:0.999536712163045 not specified not specified 13148 chr15 67358478 67358478 1 + G A rs1061427 67358461 + 67358441 67358481 41 GAGCCCAGCCCCGCCGGGGGCGCTCCTCGCCGCCCGCGCGC GAGCCCAGCCCCGCCGGGGGCGCTCCTCGCCGCCCGCACGC < 41bp 1 0.593973784313727 1 0.262444168329239 experiment 0.812052431372547 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD3 ENSG00000166949 UTR5 Human protein_coding chr15:67358461 chr15:67358478 . . 0 38 hm5C_associated_SNPs_10921 3 0 1 0 0 Cytosol 1 0.500231643921075 1 0.99953671215785 hm5C_site_13148 DeepMRMD:1;iRNA_m5C:0.99953671215785 not specified not specified 13149 chr15 67483192 67483192 1 + G A rs79368607 67483198 + 67483178 67483218 41 CAGACTCTTTTTTTGAGTGACAGCTTTCTGGGATGTCACAG CAGACTCTTTTTTTAAGTGACAGCTTTCTGGGATGTCACAG < 41bp 1 0.270086697914374 1 0.0615594387054443 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD3 ENSG00000166949 UTR3 Human protein_coding chr15:67483198 chr15:67483192 . . 0 15 hm5C_associated_SNPs_10922 2 0 1 0 0 Cytosol 1 0.500231643916673 1 0.999536712166655 hm5C_site_13149 DeepMRMD:1;iRNA_m5C:0.999536712166655 Thoracic aortic aneurysm and aortic dissection Thoracic aortic aneurysm and aortic dissection 13150 chr15 67483483 67483483 1 + A C rs564556206 67483466 + 67483446 67483486 41 GGAGGGAGTTTTGTCTGTCTCCCTCCCCTCTCAGAACATAC GGAGGGAGTTTTGTCTGTCTCCCTCCCCTCTCAGAACCTAC < 41bp 1 0.0417734876272874 1 0.303923070430756 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SMAD3 ENSG00000166949 UTR3 Human protein_coding chr15:67483466 chr15:67483483 . . 0 38 hm5C_associated_SNPs_10923 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13150 DeepMRMD:1;iRNA_m5C:0.999536712157815 13151 chr15 67483483 67483483 1 + A C rs564556206 67483467 + 67483447 67483487 41 GAGGGAGTTTTGTCTGTCTCCCTCCCCTCTCAGAACATACT GAGGGAGTTTTGTCTGTCTCCCTCCCCTCTCAGAACCTACT < 41bp 1 0.0111601556660615 1 0.15690666437149 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SMAD3 ENSG00000166949 UTR3 Human protein_coding chr15:67483467 chr15:67483483 . . 0 37 hm5C_associated_SNPs_10924 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13151 DeepMRMD:1;iRNA_m5C:0.999536712157815 13152 chr15 67483483 67483483 1 + A C rs564556206 67483468 + 67483448 67483488 41 AGGGAGTTTTGTCTGTCTCCCTCCCCTCTCAGAACATACTG AGGGAGTTTTGTCTGTCTCCCTCCCCTCTCAGAACCTACTG < 41bp 1 0.23146145362025 1 0.235073834657669 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SMAD3 ENSG00000166949 UTR3 Human protein_coding chr15:67483468 chr15:67483483 . . 0 36 hm5C_associated_SNPs_10925 0 0 1 0 0 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_13152 DeepMRMD:1;iRNA_m5C:0.999536712157806 13153 chr15 67483483 67483483 1 + A C rs564556206 67483470 + 67483450 67483490 41 GGAGTTTTGTCTGTCTCCCTCCCCTCTCAGAACATACTGAT GGAGTTTTGTCTGTCTCCCTCCCCTCTCAGAACCTACTGAT < 41bp 1 0.105909215374834 1 0.253874719142914 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SMAD3 ENSG00000166949 UTR3 Human protein_coding chr15:67483470 chr15:67483483 . . 0 34 hm5C_associated_SNPs_10926 0 0 1 0 0 Cytosol 1 0.500231635409973 1 0.999536729180053 hm5C_site_13153 DeepMRMD:1;iRNA_m5C:0.999536729180053 13154 chr15 67483483 67483483 1 + A C rs564556206 67483471 + 67483451 67483491 41 GAGTTTTGTCTGTCTCCCTCCCCTCTCAGAACATACTGATT GAGTTTTGTCTGTCTCCCTCCCCTCTCAGAACCTACTGATT < 41bp 1 0.0121489790974853 1 0.129137396812439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SMAD3 ENSG00000166949 UTR3 Human protein_coding chr15:67483471 chr15:67483483 . . 0 33 hm5C_associated_SNPs_10927 0 0 1 0 0 Cytosol 1 0.500231643921099 1 0.999536712157802 hm5C_site_13154 DeepMRMD:1;iRNA_m5C:0.999536712157802 13155 chr15 67483483 67483483 1 + A C rs564556206 67483472 + 67483452 67483492 41 AGTTTTGTCTGTCTCCCTCCCCTCTCAGAACATACTGATTG AGTTTTGTCTGTCTCCCTCCCCTCTCAGAACCTACTGATTG < 41bp 1 0.0370798516895098 1 0.0737323760986328 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SMAD3 ENSG00000166949 UTR3 Human protein_coding chr15:67483472 chr15:67483483 . . 0 32 hm5C_associated_SNPs_10928 0 0 1 0 0 Cytosol 1 0.500231820631265 1 0.99953635873747 hm5C_site_13155 DeepMRMD:1;iRNA_m5C:0.99953635873747 13156 chr15 67483483 67483483 1 + A C rs564556206 67483473 + 67483453 67483493 41 GTTTTGTCTGTCTCCCTCCCCTCTCAGAACATACTGATTGG GTTTTGTCTGTCTCCCTCCCCTCTCAGAACCTACTGATTGG < 41bp 1 0.0787286287589336 1 0.171588599681854 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SMAD3 ENSG00000166949 UTR3 Human protein_coding chr15:67483473 chr15:67483483 . . 0 31 hm5C_associated_SNPs_10929 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13156 DeepMRMD:1;iRNA_m5C:0.999536712157815 13157 chr15 67485822 67485822 1 + C T rs183703685 67485820 + 67485800 67485840 41 AGTAACTTAGATGCTTCCAGCACATACGTAGGTAGCTACCC AGTAACTTAGATGCTTCCAGCATATACGTAGGTAGCTACCC < 41bp 1 0.14863830284535 1 0.364990383386612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMAD3 ENSG00000166949 UTR3 Human protein_coding chr15:67485820 chr15:67485822 . . 0 23 hm5C_associated_SNPs_10930 0 0 1 0 0 Cytosol 1 0.500227165461939 1 0.999545669076122 hm5C_site_13157 DeepMRMD:1;iRNA_m5C:0.999545669076122 13158 chr15 67485831 67485831 1 + G C rs143339480 67485820 + 67485800 67485840 41 AGTAACTTAGATGCTTCCAGCACATACGTAGGTAGCTACCC AGTAACTTAGATGCTTCCAGCACATACGTAGCTAGCTACCC < 41bp 1 0.286964749450992 1 0.2359858751297 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMAD3 ENSG00000166949 UTR3 Human protein_coding chr15:67485820 chr15:67485831 . . 0 32 hm5C_associated_SNPs_10931 0 0 1 0 0 Cytosol 1 0.500231618922971 1 0.999536762154058 hm5C_site_13158 DeepMRMD:1;iRNA_m5C:0.999536762154058 13159 chr15 67485834 67485834 1 + G C rs151326457 67485820 + 67485800 67485840 41 AGTAACTTAGATGCTTCCAGCACATACGTAGGTAGCTACCC AGTAACTTAGATGCTTCCAGCACATACGTAGGTACCTACCC < 41bp 1 0.329956476531652 1 0.337749809026718 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMAD3 ENSG00000166949 UTR3 Human protein_coding chr15:67485820 chr15:67485834 . . 0 35 hm5C_associated_SNPs_10932 0 0 1 0 0 Cytosol 1 0.50023164390535 1 0.9995367121893 hm5C_site_13159 DeepMRMD:1;iRNA_m5C:0.9995367121893 13160 chr15 67485836 67485836 1 + T C rs188022958 67485820 + 67485800 67485840 41 AGTAACTTAGATGCTTCCAGCACATACGTAGGTAGCTACCC AGTAACTTAGATGCTTCCAGCACATACGTAGGTAGCCACCC < 41bp 1 0.33696410456009 1 0.264499127864838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMAD3 ENSG00000166949 UTR3 Human protein_coding chr15:67485820 chr15:67485836 . . 0 37 hm5C_associated_SNPs_10933 0 0 1 0 0 Cytosol 1 0.500231041240198 1 0.999537917519604 hm5C_site_13160 DeepMRMD:1;iRNA_m5C:0.999537917519604 13161 chr15 68099144 68099144 1 + C T rs191978176 68099139 + 68099119 68099159 41 CAGTAACCAAGGAGAACAACCCACCCGTCGCCCTTCTCCGT CAGTAACCAAGGAGAACAACCCACCTGTCGCCCTTCTCCGT < 41bp 1 0.268702196434883 1 0.0467779636383057 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MAP2K5 ENSG00000137764 UTR3 Human protein_coding chr15:68099139 chr15:68099144 . . 0 26 hm5C_associated_SNPs_10934 0 0 0 2 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13161 DeepMRMD:1;iRNA_m5C:0.999536712157815 13162 chr15 68480086 68480086 1 + A G rs191408288 68480074 + 68480054 68480094 41 AGCAGCCTGGTTTCTTCCAACAGCCTAAGGGAAAGCCATAG AGCAGCCTGGTTTCTTCCAACAGCCTAAGGGAGAGCCATAG < 41bp 1 0.503073108616658 1 0.403168261051178 experiment 0.993853782766684 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68480074 chr15:68480086 synonymous SNV . 0 33 hm5C_associated_SNPs_10935 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13162 DeepMRMD:1;iRNA_m5C:0.999536712157815 13163 chr15 69006909 69006909 1 + C T rs17852399 69006906 + 69006886 69006926 41 CTTCTCCCTCAGGAGGACCTCTCCATGCCCCTGATCGAAGA CTTCTCCCTCAGGAGGACCTCTCTATGCCCCTGATCGAAGA < 41bp 1 0.617409996624394 1 0.874098002910614 experiment 0.765180006751212 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69006906 chr15:69006909 synonymous SNV . 0 24 hm5C_associated_SNPs_10936 0 0 0 0 2 exosome 1 0.500231610313967 0.251803994178772 0.999536779372067 hm5C_site_13163 DeepMRMD:0.251803994178772;iRNA_m5C:0.999536779372067 13164 chr15 69652439 69652439 1 + C G rs115675417 69652440 + 69652420 69652460 41 ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCA ATGCTGAGCCTGAAGCTCCGCAGGCTGTTTAGCATAGACCA < 41bp 1 0.645819256226424 1 0.833355188369751 experiment 0.708361487547153 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652440 chr15:69652439 nonsynonymous SNV 0.563 4 20 hm5C_associated_SNPs_10937 0 0 0 0 1 Cytosol 1 0.500231643921091 0.333289623260498 0.999536712157817 hm5C_site_13164 DeepMRMD:0.333289623260498;iRNA_m5C:0.999536712157817 13165 chr15 69652451 69652451 1 + G A rs73440972 69652440 + 69652420 69652460 41 ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCA ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAACATAGACCA < 41bp 1 0.645655406977738 1 0.835965514183044 experiment 0.708689186044524 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652440 chr15:69652451 nonsynonymous SNV 0.109 0 32 hm5C_associated_SNPs_10938 0 0 0 0 1 Cytosol 1 0.500231643920403 0.328068971633912 0.999536712159195 hm5C_site_13165 DeepMRMD:0.328068971633912;iRNA_m5C:0.999536712159195 13166 chr15 69728949 69728949 1 + A G rs3825858 69728947 + 69728927 69728967 41 TGCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGAT TGCAGAGTTTTCCACCTTTGCCGTCATGCGAAATTTTGGAT < 41bp 1 0.100620111478951 1 0.119483143091202 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69728947 chr15:69728949 synonymous SNV . 0 23 hm5C_associated_SNPs_10939 0 0 1 0 1 Nucleus 1 0.500231643920142 1 0.999536712159716 hm5C_site_13166 DeepMRMD:1;iRNA_m5C:0.999536712159716 13167 chr15 69728949 69728949 1 + A G rs3825858 69728948 + 69728928 69728968 41 GCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGATA GCAGAGTTTTCCACCTTTGCCGTCATGCGAAATTTTGGATA < 41bp 1 0.641020770892182 1 0.135250508785248 experiment 0.717958458215637 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69728948 chr15:69728949 synonymous SNV . 0 22 hm5C_associated_SNPs_10940 0 0 1 0 1 Nucleus 1 0.500246547825258 1 0.999506904349484 hm5C_site_13167 DeepMRMD:1;iRNA_m5C:0.999506904349484 13168 chr15 69729049 69729049 1 + T C rs17310879 69729054 + 69729034 69729074 41 ATGATGATTGATGAGTTTAACAAACAATGTAAGGGCAAAAC ATGATGATTGATGAGCTTAACAAACAATGTAAGGGCAAAAC < 41bp 1 0.184525737324184 1 0.402299344539642 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69729054 chr15:69729049 nonsynonymous SNV 0.339 0 16 hm5C_associated_SNPs_10941 0 0 1 0 1 Nucleus 1 0.500231643920744 1 0.999536712158511 hm5C_site_13168 DeepMRMD:1;iRNA_m5C:0.999536712158511 13169 chr15 69737221 69737221 1 + C T rs200472874 69737220 + 69737200 69737240 41 CAGATGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTG CAGATGGGTAGATCATAAGCCTGCCTCTAACATGCAAACTG < 41bp 1 0.416103042540685 1 0.0383240580558777 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737220 chr15:69737221 synonymous SNV . 0 22 hm5C_associated_SNPs_10942 0 0 1 0 1 Nucleus 1 0.50023164391167 1 0.999536712176661 hm5C_site_13169 DeepMRMD:1;iRNA_m5C:0.999536712176661 13170 chr15 69737221 69737221 1 + C T rs200472874 69737224 + 69737204 69737244 41 TGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTGAAAC TGGGTAGATCATAAGCCTGCCTCTAACATGCAAACTGAAAC < 41bp 1 0.342427137895674 1 0.155661940574646 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737224 chr15:69737221 synonymous SNV . 0 18 hm5C_associated_SNPs_10943 0 0 1 0 1 Nucleus 1 0.500231639003183 1 0.999536721993635 hm5C_site_13170 DeepMRMD:1;iRNA_m5C:0.999536721993635 13171 chr15 73996338 73996338 1 + G A rs146707793 73996337 + 73996317 73996357 41 GCCGTCAGCCTGCAGGTGGCCGGTGAGCACCAGGAGGGCGA GCCGTCAGCCTGCAGGTGGCCAGTGAGCACCAGGAGGGCGA < 41bp 1 0.423011652217792 1 0.198923796415329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD276 ENSG00000103855 CDS Human protein_coding chr15:73996337 chr15:73996338 nonsynonymous SNV 0.119 4 22 hm5C_associated_SNPs_10944 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13171 DeepMRMD:1;iRNA_m5C:0.999536712157815 13172 chr15 74319874 74319874 1 + A G rs186120660 74319875 + 74319855 74319895 41 CTGCATTGTAGCGTGAGTGACAGAGTGAGACCCTGTCTCAA CTGCATTGTAGCGTGAGTGGCAGAGTGAGACCCTGTCTCAA < 41bp 1 0.208739382630984 1 0.784396231174469 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PML ENSG00000140464 intronic Human protein_coding chr15:74319875 chr15:74319874 . . 0 20 hm5C_associated_SNPs_10945 0 0 1 0 0 Cytosol 1 0.500231643920338 0.431207537651062 0.999536712159323 hm5C_site_13172 DeepMRMD:0.431207537651062;iRNA_m5C:0.999536712159323 13173 chr15 74338535 74338535 1 + A G rs549836014 74338527 + 74338507 74338547 41 TGGAAAGCAGGCCTCTGAGGCAGTGGACAGGAAGACTTCTC TGGAAAGCAGGCCTCTGAGGCAGTGGACGGGAAGACTTCTC < 41bp 1 0.428341623592409 1 0.858515381813049 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PML ENSG00000140464 UTR3 Human protein_coding chr15:74338527 chr15:74338535 . . 0 29 hm5C_associated_SNPs_10946 0 0 0 0 0 Cytosol 1 0.50023164398571 0.282969236373902 0.999536712028581 hm5C_site_13173 DeepMRMD:0.282969236373902;iRNA_m5C:0.999536712028581 13174 chr15 74501739 74501739 1 + C T rs184924574 74501740 + 74501720 74501760 41 CACTCCCAGGGGGCCACTGCCTGATGAATTGCCAGAGGGGA CACTCCCAGGGGGCCACTGTCTGATGAATTGCCAGAGGGGA < 41bp 1 0.452213848861797 1 0.338088423013687 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STRA6 ENSG00000137868 CDS Human protein_coding chr15:74501740 chr15:74501739 synonymous SNV . 0 20 hm5C_associated_SNPs_10947 0 0 0 0 1 membrane 1 0.500231643921091 1 0.999536712157818 hm5C_site_13174 DeepMRMD:1;iRNA_m5C:0.999536712157818 13175 chr15 74889817 74889817 1 + G A rs534940457 74889819 + 74889799 74889839 41 CAACTGCGTCTTCTCTCAGCCCTCCACACACACTCACCCCC CAACTGCGTCTTCTCTCAACCCTCCACACACACTCACCCCC < 41bp 1 0.0578352282253735 1 0.272160887718201 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3B ENSG00000179361 UTR3 Human protein_coding chr15:74889819 chr15:74889817 . . 0 19 hm5C_associated_SNPs_10948 0 0 0 0 0 Nucleus 1 0.500231644338539 1 0.999536711322921 hm5C_site_13175 DeepMRMD:1;iRNA_m5C:0.999536711322921 13176 chr15 74913800 74913800 1 + C T rs567613547 74913796 + 74913776 74913816 41 GGCTGGTGGCAGGAGGGCTGCTGACGGAAGGCTGTTTCTGG GGCTGGTGGCAGGAGGGCTGCTGATGGAAGGCTGTTTCTGG < 41bp 1 0.394933867278565 1 0.270706832408905 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CLK3 ENSG00000179335 intronic Human protein_coding chr15:74913796 chr15:74913800 . . 0 25 hm5C_associated_SNPs_10949 0 0 1 0 0 Nucleus 1 0.500231643921103 1 0.999536712157793 hm5C_site_13176 DeepMRMD:1;iRNA_m5C:0.999536712157793 13177 chr15 75190274 75190274 1 + G A rs562995056 75190285 + 75190265 75190305 41 GAGAGGCCCGTGTGAGGGGTCTGATACTCCCTTTGTCTTCC GAGAGGCCCATGTGAGGGGTCTGATACTCCCTTTGTCTTCC < 41bp 1 0.563057971259489 1 0.0897839665412903 experiment 0.873884057481023 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPI ENSG00000178802 UTR3 Human protein_coding chr15:75190285 chr15:75190274 . . 0 10 hm5C_associated_SNPs_10952 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_13177 DeepMRMD:1;iRNA_m5C:0.999536712157815 13178 chr15 75311719 75311719 1 + G A rs529062359 75311700 + 75311680 75311720 41 TCTGGCCCCTCTGACCCTGGCCCAGGGACCCCTCACGGGGC TCTGGCCCCTCTGACCCTGGCCCAGGGACCCCTCACGGGAC < 41bp 1 0.575726743918167 1 0.253809183835983 experiment 0.848546512163665 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCAMP5 ENSG00000198794 UTR3 Human protein_coding chr15:75311700 chr15:75311719 . . 0 40 hm5C_associated_SNPs_10953 0 0 0 0 0 cytosol 1 0.50023161918938 1 0.99953676162124 hm5C_site_13178 DeepMRMD:1;iRNA_m5C:0.99953676162124 13179 chr15 75311719 75311719 1 + G A rs529062359 75311701 + 75311681 75311721 41 CTGGCCCCTCTGACCCTGGCCCAGGGACCCCTCACGGGGCC CTGGCCCCTCTGACCCTGGCCCAGGGACCCCTCACGGGACC < 41bp 1 0.60794615072269 1 0.45396414399147 experiment 0.78410769855462 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCAMP5 ENSG00000198794 UTR3 Human protein_coding chr15:75311701 chr15:75311719 . . 0 39 hm5C_associated_SNPs_10954 0 0 0 0 0 cytosol 1 0.50023164392109 1 0.999536712157819 hm5C_site_13179 DeepMRMD:1;iRNA_m5C:0.999536712157819 13180 chr15 75311719 75311719 1 + G A rs529062359 75311720 + 75311700 75311740 41 CCCAGGGACCCCTCACGGGGCCAGGGGAGGCATAGCAGAAA CCCAGGGACCCCTCACGGGACCAGGGGAGGCATAGCAGAAA < 41bp 1 0.661751845840487 1 0.411582320928574 experiment 0.676496308319026 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCAMP5 ENSG00000198794 UTR3 Human protein_coding chr15:75311720 chr15:75311719 . . 0 20 hm5C_associated_SNPs_10955 0 0 0 0 0 cytosol 1 0.500231643921076 1 0.999536712157849 hm5C_site_13180 DeepMRMD:1;iRNA_m5C:0.999536712157849 13181 chr15 76196230 76196230 1 + G T rs529490017 76196236 + 76196216 76196256 41 CTCAGTGCGCGCCGGCCGGGCAACCCTATGCTGGCGTAATC CTCAGTGCGCGCCGTCCGGGCAACCCTATGCTGGCGTAATC < 41bp 1 0.449298648576507 1 0.140582054853439 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FBXO22 ENSG00000167196 UTR5 Human protein_coding chr15:76196236 chr15:76196230 . . 0 15 hm5C_associated_SNPs_10957 0 0 0 0 0 Cytosol 1 0.500231737661169 1 0.999536524677662 hm5C_site_13181 DeepMRMD:1;iRNA_m5C:0.999536524677662 13182 chr15 76196246 76196246 1 + C G rs78630828 76196236 + 76196216 76196256 41 CTCAGTGCGCGCCGGCCGGGCAACCCTATGCTGGCGTAATC CTCAGTGCGCGCCGGCCGGGCAACCCTATGGTGGCGTAATC < 41bp 1 0.431079446648609 1 0.306751430034637 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FBXO22 ENSG00000167196 UTR5 Human protein_coding chr15:76196236 chr15:76196246 . . 0 31 hm5C_associated_SNPs_10958 0 0 1 0 0 Cytosol 1 0.50023164386497 1 0.999536712270061 hm5C_site_13182 DeepMRMD:1;iRNA_m5C:0.999536712270061 13183 chr15 76196247 76196247 1 + T G rs149601564 76196236 + 76196216 76196256 41 CTCAGTGCGCGCCGGCCGGGCAACCCTATGCTGGCGTAATC CTCAGTGCGCGCCGGCCGGGCAACCCTATGCGGGCGTAATC < 41bp 1 0.430806323935226 1 0.189368277788162 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FBXO22 ENSG00000167196 UTR5 Human protein_coding chr15:76196236 chr15:76196247 . . 0 32 hm5C_associated_SNPs_10959 0 0 1 0 0 Cytosol 1 0.50023155160387 1 0.99953689679226 hm5C_site_13183 DeepMRMD:1;iRNA_m5C:0.99953689679226 13184 chr15 78458638 78458638 1 + C T rs2304826 78458628 + 78458608 78458648 41 TGAGGCTGCGTGTTTTGCTACAATTAAGGACGGAAAGGTAA TGAGGCTGCGTGTTTTGCTACAATTAAGGATGGAAAGGTAA < 41bp 1 0.157906347018383 1 0.0463123321533203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IDH3A ENSG00000166411 CDS Human protein_coding chr15:78458628 chr15:78458638 synonymous SNV . 0 31 hm5C_associated_SNPs_10961 0 0 1 0 1 Cytosol 1 0.500231643655285 1 0.999536712689429 hm5C_site_13184 DeepMRMD:1;iRNA_m5C:0.999536712689429 13185 chr15 78792487 78792487 1 + C G rs113739008 78792477 + 78792457 78792497 41 GCTGGGATTACAGGTGTGAGCCACCACACCCGGCCTATATT GCTGGGATTACAGGTGTGAGCCACCACACCGGGCCTATATT < 41bp 1 0.399452953751184 1 0.201663225889206 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control IREB2 ENSG00000136381 UTR3 Human protein_coding chr15:78792477 chr15:78792487 . . 0 31 hm5C_associated_SNPs_10962 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13185 DeepMRMD:1;iRNA_m5C:0.999536712157815 13186 chr15 78792487 78792487 1 + C G rs113739008 78792480 + 78792460 78792500 41 GGGATTACAGGTGTGAGCCACCACACCCGGCCTATATTGTT GGGATTACAGGTGTGAGCCACCACACCGGGCCTATATTGTT < 41bp 1 0.524696426086752 1 0.345049798488617 experiment 0.950607147826495 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control IREB2 ENSG00000136381 UTR3 Human protein_coding chr15:78792480 chr15:78792487 . . 0 28 hm5C_associated_SNPs_10963 0 0 1 0 0 Cytosol 1 0.500231643769223 1 0.999536712461555 hm5C_site_13186 DeepMRMD:1;iRNA_m5C:0.999536712461555 13187 chr15 78792487 78792487 1 + C G rs113739008 78792481 + 78792461 78792501 41 GGATTACAGGTGTGAGCCACCACACCCGGCCTATATTGTTT GGATTACAGGTGTGAGCCACCACACCGGGCCTATATTGTTT < 41bp 1 0.479595332101603 1 0.268430978059769 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control IREB2 ENSG00000136381 UTR3 Human protein_coding chr15:78792481 chr15:78792487 . . 0 27 hm5C_associated_SNPs_10964 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13187 DeepMRMD:1;iRNA_m5C:0.999536712157815 13188 chr15 78833256 78833256 1 + A G rs150231852 78833244 + 78833224 78833264 41 GTGCTGTGCCCGGCGTCAGGCGTGGAGACAACAGAAAGTTG GTGCTGTGCCCGGCGTCAGGCGTGGAGACAACGGAAAGTTG < 41bp 1 0.697363618557168 1 0.72403621673584 experiment 0.605272762885663 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PSMA4 ENSG00000041357 UTR5 Human protein_coding chr15:78833244 chr15:78833256 . . 0 33 hm5C_associated_SNPs_10965 0 0 1 0 0 Ribosome 1 0.500231781012803 0.55192756652832 0.999536437974394 hm5C_site_13188 DeepMRMD:0.55192756652832;iRNA_m5C:0.999536437974394 13189 chr15 79152936 79152936 1 + T C rs59724511 79152916 + 79152896 79152936 41 CTCTAACTGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACT CTCTAACTGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACC < 41bp 1 0.364956478918957 1 0.449207544326782 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ADAMTS7;MORF4L1 ENSG00000185787 intronic Human protein_coding chr15:79152916 chr15:79152936 . . 0 41 hm5C_associated_SNPs_10967 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13189 DeepMRMD:1;iRNA_m5C:0.999536712157815 13190 chr15 79152936 79152936 1 + T C rs59724511 79152920 + 79152900 79152940 41 AACTGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTA AACTGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACCCTTA < 41bp 1 0.682998429797684 1 0.527726352214813 experiment 0.634003140404632 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ADAMTS7;MORF4L1 ENSG00000185787 intronic Human protein_coding chr15:79152920 chr15:79152936 . . 0 37 hm5C_associated_SNPs_10968 0 0 1 0 0 unknown 1 0.500231643921092 0.944547295570374 0.999536712157815 hm5C_site_13190 DeepMRMD:0.944547295570374;iRNA_m5C:0.999536712157815 13191 chr15 79152936 79152936 1 + T C rs59724511 79152928 + 79152908 79152948 41 GGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGG GGCTAGCTCAGTCGGTAGAGCATGGGACCCTTAATCCCAGG < 41bp 1 0.621827721311577 1 0.63689774274826 experiment 0.756344557376846 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ADAMTS7;MORF4L1 ENSG00000185787 intronic Human protein_coding chr15:79152928 chr15:79152936 . . 0 29 hm5C_associated_SNPs_10969 0 0 1 0 0 unknown 1 0.500231643921092 0.72620451450348 0.999536712157815 hm5C_site_13191 DeepMRMD:0.72620451450348;iRNA_m5C:0.999536712157815 13192 chr15 79152936 79152936 1 + T C rs59724511 79152935 + 79152915 79152955 41 TCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGG TCAGTCGGTAGAGCATGGGACCCTTAATCCCAGGGTCGTGG < 41bp 1 0.0407511214621909 1 0.0134864151477814 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ADAMTS7;MORF4L1 ENSG00000185787 intronic Human protein_coding chr15:79152935 chr15:79152936 . . 0 22 hm5C_associated_SNPs_10970 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_13192 DeepMRMD:1;iRNA_m5C:0.999536712157812 13193 chr15 79152936 79152936 1 + T C rs59724511 79152943 + 79152923 79152963 41 TAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGC TAGAGCATGGGACCCTTAATCCCAGGGTCGTGGGTTCGAGC < 41bp 1 0.437386483140468 1 0.845141649246216 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ADAMTS7;MORF4L1 ENSG00000185787 intronic Human protein_coding chr15:79152943 chr15:79152936 . . 0 14 hm5C_associated_SNPs_10971 0 0 1 0 0 unknown 1 0.500231643915076 0.309716701507568 0.999536712169849 hm5C_site_13193 DeepMRMD:0.309716701507568;iRNA_m5C:0.999536712169849 13194 chr15 79152936 79152936 1 + T C rs59724511 79152951 + 79152931 79152971 41 GGGACTCTTAATCCCAGGGTCGTGGGTTCGAGCCCCACGTT GGGACCCTTAATCCCAGGGTCGTGGGTTCGAGCCCCACGTT < 41bp 1 0.619353562154394 1 0.541346073150635 experiment 0.761292875691213 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ADAMTS7;MORF4L1 ENSG00000185787 intronic Human protein_coding chr15:79152951 chr15:79152936 . . 0 6 hm5C_associated_SNPs_10973 0 0 1 0 0 unknown 1 0.500231643920499 0.91730785369873 0.999536712159003 hm5C_site_13194 DeepMRMD:0.91730785369873;iRNA_m5C:0.999536712159003 13195 chr15 79152975 79152975 1 + C G rs117252182 79152959 + 79152939 79152979 41 TAATCCCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGGT TAATCCCAGGGTCGTGGGTTCGAGCCCCACGTTGGGGGGGT < 41bp 1 0.424775860586284 1 0.309233754873276 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ADAMTS7;MORF4L1 ENSG00000185787 intronic Human protein_coding chr15:79152959 chr15:79152975 . . 0 37 hm5C_associated_SNPs_10974 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_13195 DeepMRMD:1;iRNA_m5C:0.999536712157816 13196 chr15 79152975 79152975 1 + C G rs117252182 79152963 + 79152943 79152983 41 CCCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGGTTTGT CCCAGGGTCGTGGGTTCGAGCCCCACGTTGGGGGGGTTTGT < 41bp 1 0.334497221040737 1 0.137205004692078 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ADAMTS7;MORF4L1 ENSG00000185787 intronic Human protein_coding chr15:79152963 chr15:79152975 . . 0 33 hm5C_associated_SNPs_10975 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13196 DeepMRMD:1;iRNA_m5C:0.999536712157815 13197 chr15 79152975 79152975 1 + C G rs117252182 79152966 + 79152946 79152986 41 AGGGTCGTGGGTTCGAGCCCCACGTTGGGCGGGTTTGTTTT AGGGTCGTGGGTTCGAGCCCCACGTTGGGGGGGTTTGTTTT < 41bp 1 0.463494976689506 1 0.500787913799286 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ADAMTS7;MORF4L1 ENSG00000185787 intronic Human protein_coding chr15:79152966 chr15:79152975 . . 0 30 hm5C_associated_SNPs_10976 0 0 1 0 0 unknown 1 0.500231639656319 0.998424172401428 0.999536720687363 hm5C_site_13197 DeepMRMD:0.998424172401428;iRNA_m5C:0.999536720687363 13198 chr15 79185898 79185898 1 + C A rs1435163 79185883 + 79185863 79185903 41 ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCCAAGAA ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCAAAGAA < 41bp 1 0.037060214704337 1 0.0490189790725708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79185883 chr15:79185898 synonymous SNV . 0 36 hm5C_associated_SNPs_10977 0 0 1 0 2 Nucleus 1 0.500231643723699 1 0.999536712552602 hm5C_site_13198 DeepMRMD:1;iRNA_m5C:0.999536712552602 13199 chr15 79615168 79615168 1 + C G rs74326713 79615183 + 79615163 79615203 41 AAAAACTAAGTGTGAGCGTCCTGGAGACTTGTGCCTTTATT AAAAAGTAAGTGTGAGCGTCCTGGAGACTTGTGCCTTTATT < 41bp 1 0.615777306460137 1 0.766409397125244 experiment 0.768445387079726 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMED3 ENSG00000166557 UTR3 Human protein_coding chr15:79615183 chr15:79615168 . . 0 6 hm5C_associated_SNPs_10978 0 0 1 3 0 Ribosome 1 0.500231643922215 0.467181205749512 0.99953671215557 hm5C_site_13199 DeepMRMD:0.467181205749512;iRNA_m5C:0.99953671215557 13200 chr15 79615180 79615180 1 + G A rs139872152 79615183 + 79615163 79615203 41 AAAAACTAAGTGTGAGCGTCCTGGAGACTTGTGCCTTTATT AAAAACTAAGTGTGAGCATCCTGGAGACTTGTGCCTTTATT < 41bp 1 0.671713283673921 1 0.789909362792969 experiment 0.656573432652158 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMED3 ENSG00000166557 UTR3 Human protein_coding chr15:79615183 chr15:79615180 . . 0 18 hm5C_associated_SNPs_10979 0 0 1 2 0 Ribosome 1 0.500231643921102 0.420181274414062 0.999536712157795 hm5C_site_13200 DeepMRMD:0.420181274414062;iRNA_m5C:0.999536712157795 13201 chr15 80036998 80036998 1 + G A rs145909576 80037007 + 80036987 80037027 41 AACAGTTGAAGGGGGTATAGCTCAGTGGGTAGAGCATTTGA AACAGTTGAAGAGGGTATAGCTCAGTGGGTAGAGCATTTGA < 41bp 1 0.492964083689223 1 0.424968332052231 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037007 chr15:80036998 . . 0 12 hm5C_associated_SNPs_10980 0 0 1 0 0 unknown 1 0.500231360006982 1 0.999537279986036 hm5C_site_13201 DeepMRMD:1;iRNA_m5C:0.999537279986036 13202 chr15 80036998 80036998 1 + G A rs145909576 80037009 + 80036989 80037029 41 CAGTTGAAGGGGGTATAGCTCAGTGGGTAGAGCATTTGACT CAGTTGAAGAGGGTATAGCTCAGTGGGTAGAGCATTTGACT < 41bp 1 0.47514040488108 1 0.541272044181824 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037009 chr15:80036998 . . 0 10 hm5C_associated_SNPs_10981 0 0 1 0 0 unknown 1 0.500231643920739 0.917455911636352 0.999536712158523 hm5C_site_13202 DeepMRMD:0.917455911636352;iRNA_m5C:0.999536712158523 13203 chr15 80037002 80037002 1 + T G rs138601653 80037007 + 80036987 80037027 41 AACAGTTGAAGGGGGTATAGCTCAGTGGGTAGAGCATTTGA AACAGTTGAAGGGGGGATAGCTCAGTGGGTAGAGCATTTGA < 41bp 1 0.575438250237996 1 0.629554390907288 experiment 0.849123499524008 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037007 chr15:80037002 . . 0 16 hm5C_associated_SNPs_10982 0 0 1 0 0 unknown 1 0.500232106492937 0.740891218185424 0.999535787014127 hm5C_site_13203 DeepMRMD:0.740891218185424;iRNA_m5C:0.999535787014127 13204 chr15 80037002 80037002 1 + T G rs138601653 80037009 + 80036989 80037029 41 CAGTTGAAGGGGGTATAGCTCAGTGGGTAGAGCATTTGACT CAGTTGAAGGGGGGATAGCTCAGTGGGTAGAGCATTTGACT < 41bp 1 0.572470581322515 1 0.697182893753052 experiment 0.85505883735497 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037009 chr15:80037002 . . 0 14 hm5C_associated_SNPs_10983 0 0 1 0 0 unknown 1 0.500231643921092 0.605634212493896 0.999536712157815 hm5C_site_13204 DeepMRMD:0.605634212493896;iRNA_m5C:0.999536712157815 13205 chr15 80037002 80037002 1 + T G rs138601653 80037021 + 80037001 80037041 41 GTATAGCTCAGTGGGTAGAGCATTTGACTGCAGATCAAGAG GGATAGCTCAGTGGGTAGAGCATTTGACTGCAGATCAAGAG < 41bp 1 0.124045444930226 1 0.0689064860343933 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037021 chr15:80037002 . . 0 2 hm5C_associated_SNPs_10984 0 0 1 0 0 unknown 1 0.500231643921486 1 0.999536712157028 hm5C_site_13205 DeepMRMD:1;iRNA_m5C:0.999536712157028 13206 chr15 80037003 80037003 1 + A G rs370723787 80037007 + 80036987 80037027 41 AACAGTTGAAGGGGGTATAGCTCAGTGGGTAGAGCATTTGA AACAGTTGAAGGGGGTGTAGCTCAGTGGGTAGAGCATTTGA < 41bp 1 0.504969638073292 1 0.38787853717804 experiment 0.990060723853416 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037007 chr15:80037003 . . 0 17 hm5C_associated_SNPs_10985 0 0 1 0 0 unknown 1 0.500175585033598 1 0.999648829932804 hm5C_site_13206 DeepMRMD:1;iRNA_m5C:0.999648829932804 13207 chr15 80037003 80037003 1 + A G rs370723787 80037009 + 80036989 80037029 41 CAGTTGAAGGGGGTATAGCTCAGTGGGTAGAGCATTTGACT CAGTTGAAGGGGGTGTAGCTCAGTGGGTAGAGCATTTGACT < 41bp 1 0.522876238317309 1 0.659955739974976 experiment 0.954247523365382 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037009 chr15:80037003 . . 0 15 hm5C_associated_SNPs_10986 0 0 1 0 0 unknown 1 0.500231643835936 0.680088520050048 0.999536712328128 hm5C_site_13207 DeepMRMD:0.680088520050048;iRNA_m5C:0.999536712328128 13208 chr15 80037003 80037003 1 + A G rs370723787 80037021 + 80037001 80037041 41 GTATAGCTCAGTGGGTAGAGCATTTGACTGCAGATCAAGAG GTGTAGCTCAGTGGGTAGAGCATTTGACTGCAGATCAAGAG < 41bp 1 0.124307553802878 1 0.0701411664485931 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037021 chr15:80037003 . . 0 3 hm5C_associated_SNPs_10987 0 0 1 0 0 unknown 1 0.500231642475379 1 0.999536715049242 hm5C_site_13208 DeepMRMD:1;iRNA_m5C:0.999536715049242 13209 chr15 80037049 80037049 1 + G C rs536392457 80037031 + 80037011 80037051 41 GTGGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCGGTT GTGGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCGCTT < 41bp 1 0.456619510030122 1 0.757487416267395 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037031 chr15:80037049 . . 0 39 hm5C_associated_SNPs_10988 0 0 1 0 0 unknown 1 0.500231642861775 0.48502516746521 0.99953671427645 hm5C_site_13209 DeepMRMD:0.48502516746521;iRNA_m5C:0.99953671427645 13210 chr15 80037049 80037049 1 + G C rs536392457 80037044 + 80037024 80037064 41 TTGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGC TTGACTGCAGATCAAGAGGTCCCCGCTTCAAATCCGGGTGC < 41bp 1 0.247229246217592 1 0.0596183836460114 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037044 chr15:80037049 . . 0 26 hm5C_associated_SNPs_10990 0 0 1 0 0 unknown 1 0.500231643920861 1 0.999536712158278 hm5C_site_13210 DeepMRMD:1;iRNA_m5C:0.999536712158278 13211 chr15 80037049 80037049 1 + G C rs536392457 80037045 + 80037025 80037065 41 TGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCC TGACTGCAGATCAAGAGGTCCCCGCTTCAAATCCGGGTGCC < 41bp 1 0.155204732422165 1 0.0798411667346954 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037045 chr15:80037049 . . 0 25 hm5C_associated_SNPs_10991 0 0 1 0 0 unknown 1 0.500231648621093 1 0.999536702757813 hm5C_site_13211 DeepMRMD:1;iRNA_m5C:0.999536702757813 13212 chr15 80037049 80037049 1 + G C rs536392457 80037046 + 80037026 80037066 41 GACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCC GACTGCAGATCAAGAGGTCCCCGCTTCAAATCCGGGTGCCC < 41bp 1 0.195049974691898 1 0.047564297914505 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037046 chr15:80037049 . . 0 24 hm5C_associated_SNPs_10992 0 0 1 0 0 unknown 1 0.50023164402401 1 0.999536711951981 hm5C_site_13212 DeepMRMD:1;iRNA_m5C:0.999536711951981 13213 chr15 80037049 80037049 1 + G C rs536392457 80037047 + 80037027 80037067 41 ACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCC ACTGCAGATCAAGAGGTCCCCGCTTCAAATCCGGGTGCCCC < 41bp 1 0.205391489152669 1 0.0924245417118073 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037047 chr15:80037049 . . 0 23 hm5C_associated_SNPs_10993 0 0 1 0 0 unknown 1 0.500213994746151 1 0.999572010507698 hm5C_site_13213 DeepMRMD:1;iRNA_m5C:0.999572010507698 13214 chr15 80037049 80037049 1 + G C rs536392457 80037052 + 80037032 80037072 41 AGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCTGCC AGATCAAGAGGTCCCCGCTTCAAATCCGGGTGCCCCCTGCC < 41bp 1 0.214206815858872 1 0.355273395776749 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037052 chr15:80037049 . . 0 18 hm5C_associated_SNPs_10994 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_13214 DeepMRMD:1;iRNA_m5C:0.999536712157815 13215 chr15 80037049 80037049 1 + G C rs536392457 80037057 + 80037037 80037077 41 AAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCTGCCTGAAA AAGAGGTCCCCGCTTCAAATCCGGGTGCCCCCTGCCTGAAA < 41bp 1 0.587939156380717 1 0.884669482707977 experiment 0.824121687238565 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037057 chr15:80037049 . . 0 13 hm5C_associated_SNPs_10995 0 0 1 0 0 unknown 1 0.500231645085865 0.230661034584046 0.999536709828271 hm5C_site_13215 DeepMRMD:0.230661034584046;iRNA_m5C:0.999536709828271 13216 chr15 80037049 80037049 1 + G C rs536392457 80037058 + 80037038 80037078 41 AGAGGTCCCCGGTTCAAATCCGGGTGCCCCCTGCCTGAAAG AGAGGTCCCCGCTTCAAATCCGGGTGCCCCCTGCCTGAAAG < 41bp 1 0.69441195937354 1 0.845267713069916 experiment 0.611176081252919 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037058 chr15:80037049 . . 0 12 hm5C_associated_SNPs_10996 0 0 1 0 0 unknown 1 0.500231643921092 0.309464573860168 0.999536712157815 hm5C_site_13216 DeepMRMD:0.309464573860168;iRNA_m5C:0.999536712157815 13217 chr15 80037049 80037049 1 + G C rs536392457 80037066 + 80037046 80037086 41 CCGGTTCAAATCCGGGTGCCCCCTGCCTGAAAGTTTTCTTA CCGCTTCAAATCCGGGTGCCCCCTGCCTGAAAGTTTTCTTA < 41bp 1 0.0708648030763682 1 0.0592817366123199 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037066 chr15:80037049 . . 0 4 hm5C_associated_SNPs_10997 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13217 DeepMRMD:1;iRNA_m5C:0.999536712157815 13218 chr15 80037049 80037049 1 + G C rs536392457 80037067 + 80037047 80037087 41 CGGTTCAAATCCGGGTGCCCCCTGCCTGAAAGTTTTCTTAC CGCTTCAAATCCGGGTGCCCCCTGCCTGAAAGTTTTCTTAC < 41bp 1 0.0756733438610625 1 0.11263570189476 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037067 chr15:80037049 . . 0 3 hm5C_associated_SNPs_10998 0 0 1 0 0 unknown 1 0.500231643596549 1 0.999536712806901 hm5C_site_13218 DeepMRMD:1;iRNA_m5C:0.999536712806901 13219 chr15 80037049 80037049 1 + G C rs536392457 80037068 + 80037048 80037088 41 GGTTCAAATCCGGGTGCCCCCTGCCTGAAAGTTTTCTTACT GCTTCAAATCCGGGTGCCCCCTGCCTGAAAGTTTTCTTACT < 41bp 1 0.344425548426306 1 0.35573023557663 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037068 chr15:80037049 . . 0 2 hm5C_associated_SNPs_10999 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13219 DeepMRMD:1;iRNA_m5C:0.999536712157815 13220 chr15 80037068 80037068 1 + C G rs185560627 80037052 + 80037032 80037072 41 AGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCTGCC AGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCGTGCC < 41bp 1 0.2216363530402 1 0.248616009950638 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037052 chr15:80037068 . . 0 37 hm5C_associated_SNPs_11000 0 0 1 0 0 unknown 1 0.50023164392109 1 0.99953671215782 hm5C_site_13220 DeepMRMD:1;iRNA_m5C:0.99953671215782 13221 chr15 80037068 80037068 1 + C G rs185560627 80037057 + 80037037 80037077 41 AAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCTGCCTGAAA AAGAGGTCCCCGGTTCAAATCCGGGTGCCCCGTGCCTGAAA < 41bp 1 0.640361057971253 1 0.91515439748764 experiment 0.719277884057493 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037057 chr15:80037068 . . 0 32 hm5C_associated_SNPs_11001 0 0 1 0 0 unknown 1 0.500231809433575 0.16969120502472 0.99953638113285 hm5C_site_13221 DeepMRMD:0.16969120502472;iRNA_m5C:0.99953638113285 13222 chr15 80037068 80037068 1 + C G rs185560627 80037066 + 80037046 80037086 41 CCGGTTCAAATCCGGGTGCCCCCTGCCTGAAAGTTTTCTTA CCGGTTCAAATCCGGGTGCCCCGTGCCTGAAAGTTTTCTTA < 41bp 1 0.107680861502626 1 0.0715497434139252 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037066 chr15:80037068 . . 0 23 hm5C_associated_SNPs_11003 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_13222 DeepMRMD:1;iRNA_m5C:0.999536712157815 13223 chr15 80037068 80037068 1 + C G rs185560627 80037067 + 80037047 80037087 41 CGGTTCAAATCCGGGTGCCCCCTGCCTGAAAGTTTTCTTAC CGGTTCAAATCCGGGTGCCCCGTGCCTGAAAGTTTTCTTAC < 41bp 1 0.236436362432538 1 0.0802614688873291 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037067 chr15:80037068 . . 0 22 hm5C_associated_SNPs_11004 0 0 1 0 0 unknown 1 0.500231611124176 1 0.999536777751648 hm5C_site_13223 DeepMRMD:1;iRNA_m5C:0.999536777751648 13224 chr15 80037069 80037069 1 + T A rs574584834 80037052 + 80037032 80037072 41 AGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCTGCC AGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCAGCC < 41bp 1 0.235835598978138 1 0.305403172969818 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037052 chr15:80037069 . . 0 38 hm5C_associated_SNPs_11005 0 0 1 0 0 unknown 1 0.500231643918875 1 0.99953671216225 hm5C_site_13224 DeepMRMD:1;iRNA_m5C:0.99953671216225 13225 chr15 80037069 80037069 1 + T A rs574584834 80037057 + 80037037 80037077 41 AAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCTGCCTGAAA AAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCAGCCTGAAA < 41bp 1 0.622430643773934 1 0.917070746421814 experiment 0.755138712452132 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037057 chr15:80037069 . . 0 33 hm5C_associated_SNPs_11006 0 0 1 0 0 unknown 1 0.500231661966029 0.165858507156372 0.999536676067942 hm5C_site_13225 DeepMRMD:0.165858507156372;iRNA_m5C:0.999536676067942 13226 chr15 80037069 80037069 1 + T A rs574584834 80037058 + 80037038 80037078 41 AGAGGTCCCCGGTTCAAATCCGGGTGCCCCCTGCCTGAAAG AGAGGTCCCCGGTTCAAATCCGGGTGCCCCCAGCCTGAAAG < 41bp 1 0.692648707551657 1 0.888103008270264 experiment 0.614702584896686 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037058 chr15:80037069 . . 0 32 hm5C_associated_SNPs_11007 0 0 1 0 0 unknown 1 0.500231643921092 0.223793983459472 0.999536712157815 hm5C_site_13226 DeepMRMD:0.223793983459472;iRNA_m5C:0.999536712157815 13227 chr15 80037069 80037069 1 + T A rs574584834 80037066 + 80037046 80037086 41 CCGGTTCAAATCCGGGTGCCCCCTGCCTGAAAGTTTTCTTA CCGGTTCAAATCCGGGTGCCCCCAGCCTGAAAGTTTTCTTA < 41bp 1 0.125191464763137 1 0.0704418122768402 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037066 chr15:80037069 . . 0 24 hm5C_associated_SNPs_11008 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13227 DeepMRMD:1;iRNA_m5C:0.999536712157815 13228 chr15 80037069 80037069 1 + T A rs574584834 80037067 + 80037047 80037087 41 CGGTTCAAATCCGGGTGCCCCCTGCCTGAAAGTTTTCTTAC CGGTTCAAATCCGGGTGCCCCCAGCCTGAAAGTTTTCTTAC < 41bp 1 0.164614130853629 1 0.145288735628128 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037067 chr15:80037069 . . 0 23 hm5C_associated_SNPs_11009 0 0 1 0 0 unknown 1 0.500231286334549 1 0.999537427330901 hm5C_site_13228 DeepMRMD:1;iRNA_m5C:0.999537427330901 13229 chr15 80037069 80037069 1 + T A rs574584834 80037068 + 80037048 80037088 41 GGTTCAAATCCGGGTGCCCCCTGCCTGAAAGTTTTCTTACT GGTTCAAATCCGGGTGCCCCCAGCCTGAAAGTTTTCTTACT < 41bp 1 0.361556486094924 1 0.32694798707962 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target KIAA1024;MTHFS ENSG00000260674;ENSG00000213527 intergenic Human other chr15:80037068 chr15:80037069 . . 0 22 hm5C_associated_SNPs_11010 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13229 DeepMRMD:1;iRNA_m5C:0.999536712157815 13230 chr15 80430236 80430236 1 + C T rs556016603 80430256 + 80430236 80430276 41 CGTGCAGAAATTTTGGAGGGCTGTGATTTTTCCAGTATTAA TGTGCAGAAATTTTGGAGGGCTGTGATTTTTCCAGTATTAA < 41bp 1 0.251305646217977 1 0.0423670411109924 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFAND6 ENSG00000086666 UTR3 Human protein_coding chr15:80430256 chr15:80430236 . . 0 1 hm5C_associated_SNPs_11011 0 0 1 1 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_13230 DeepMRMD:1;iRNA_m5C:0.999536712157814 13231 chr15 80450501 80450501 1 + G T rs151264725 80450510 + 80450490 80450530 41 AACACCAGGATGTCTTCAATCAGGTAGGACATTGTGAAACG AACACCAGGATTTCTTCAATCAGGTAGGACATTGTGAAACG < 41bp 1 0.633385299761259 1 0.822506070137024 experiment 0.733229400477482 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAH ENSG00000103876 CDS Human protein_coding chr15:80450510 chr15:80450501 nonsynonymous SNV 0.989 5 12 hm5C_associated_SNPs_11012 0 0 1 0 2 Cytosol 1 0.500230048371597 0.354987859725952 0.999539903256806 hm5C_site_13231 DeepMRMD:0.354987859725952;iRNA_m5C:0.999539903256806 13232 chr15 80886758 80886758 1 + G C rs74027869 80886747 + 80886727 80886767 41 TGTGGCCCTGTCCCCAAGCTCAGCACCACCGGCCATGACCA TGTGGCCCTGTCCCCAAGCTCAGCACCACCGCCCATGACCA < 41bp 1 0.69217029703195 1 0.73814058303833 experiment 0.6156594059361 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARNT2 ENSG00000172379 UTR3 Human protein_coding chr15:80886747 chr15:80886758 . . 0 32 hm5C_associated_SNPs_11013 0 0 0 0 0 Cytosol 1 0.500231643921092 0.52371883392334 0.999536712157815 hm5C_site_13232 DeepMRMD:0.52371883392334;iRNA_m5C:0.999536712157815 13233 chr15 81173442 81173442 1 + C T rs146635298 81173448 + 81173428 81173468 41 ATTGTTCATGTCATCGACCCCAAATCAGGCACAGTCATCCA ATTGTTCATGTCATTGACCCCAAATCAGGCACAGTCATCCA < 41bp 1 0.13158151660615 1 0.15278747677803 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81173448 chr15:81173442 synonymous SNV . 0 15 hm5C_associated_SNPs_11015 0 0 0 0 1 Nucleus 1 0.500229995184554 1 0.999540009630892 hm5C_site_13233 DeepMRMD:1;iRNA_m5C:0.999540009630892 13234 chr15 81221492 81221492 1 + C T rs35092028 81221501 + 81221481 81221521 41 TTGGACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGT TTGGACCATAGTGGAAGGACCCTCCCTATAGGCCAGTAGGT < 41bp 1 0.0125305692092677 1 0.0263857245445251 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221501 chr15:81221492 synonymous SNV . 0 12 hm5C_associated_SNPs_11016 0 0 1 0 1 Nucleus 1 0.500231643921232 1 0.999536712157536 hm5C_site_13234 DeepMRMD:1;iRNA_m5C:0.999536712157536 13235 chr15 81221492 81221492 1 + C T rs35092028 81221505 + 81221485 81221525 41 ACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGTTTGC ACCATAGTGGAAGGACCCTCCCTATAGGCCAGTAGGTTTGC < 41bp 1 0.0333854889273597 1 0.382892847061157 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221505 chr15:81221492 synonymous SNV . 0 8 hm5C_associated_SNPs_11017 0 0 1 0 1 Nucleus 1 0.500231643982139 1 0.999536712035723 hm5C_site_13235 DeepMRMD:1;iRNA_m5C:0.999536712035723 13236 chr15 81221512 81221512 1 + G A rs113116775 81221501 + 81221481 81221521 41 TTGGACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGT TTGGACCATAGCGGAAGGACCCTCCCTATAGACCAGTAGGT < 41bp 1 0.0145500754634428 1 0.0312937200069427 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221501 chr15:81221512 nonsynonymous SNV 0.996 1 32 hm5C_associated_SNPs_11018 0 0 1 0 1 Nucleus 1 0.500231643925333 1 0.999536712149334 hm5C_site_13236 DeepMRMD:1;iRNA_m5C:0.999536712149334 13237 chr15 81221512 81221512 1 + G A rs113116775 81221505 + 81221485 81221525 41 ACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGTTTGC ACCATAGCGGAAGGACCCTCCCTATAGACCAGTAGGTTTGC < 41bp 1 0.0254611464772965 1 0.565735101699829 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221505 chr15:81221512 nonsynonymous SNV 0.996 1 28 hm5C_associated_SNPs_11019 0 0 1 0 1 Nucleus 1 0.50023164863565 0.868529796600342 0.999536702728701 hm5C_site_13237 DeepMRMD:0.868529796600342;iRNA_m5C:0.999536702728701 13238 chr15 81294344 81294344 1 + C T rs112982370 81294357 + 81294337 81294377 41 CTGCAAGCCCTCTAGGAGGCCGAAAGCTGCAGCCCCTCCCC CTGCAAGTCCTCTAGGAGGCCGAAAGCTGCAGCCCCTCCCC < 41bp 1 0.660788626699722 1 0.813725352287292 experiment 0.678422746600555 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TLNRD1 ENSG00000140406 UTR5 Human protein_coding chr15:81294357 chr15:81294344 . . 0 8 hm5C_associated_SNPs_11020 0 0 1 0 0 unknown 1 0.500231643921092 0.372549295425416 0.999536712157815 hm5C_site_13238 DeepMRMD:0.372549295425416;iRNA_m5C:0.999536712157815 13239 chr15 81294354 81294354 1 + G A rs114310271 81294357 + 81294337 81294377 41 CTGCAAGCCCTCTAGGAGGCCGAAAGCTGCAGCCCCTCCCC CTGCAAGCCCTCTAGGAAGCCGAAAGCTGCAGCCCCTCCCC < 41bp 1 0.680460477752819 1 0.864837169647217 experiment 0.639079044494362 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TLNRD1 ENSG00000140406 UTR5 Human protein_coding chr15:81294357 chr15:81294354 . . 0 18 hm5C_associated_SNPs_11021 0 0 1 0 0 unknown 1 0.500231643921092 0.270325660705566 0.999536712157815 hm5C_site_13239 DeepMRMD:0.270325660705566;iRNA_m5C:0.999536712157815 13240 chr15 83502165 83502165 1 + C G rs143961704 83502180 + 83502160 83502200 41 CCAACCAGCAACAGACGCACCAGTGACCTTGAGAGGAGCAT CCAACGAGCAACAGACGCACCAGTGACCTTGAGAGGAGCAT < 41bp 1 0.267640480835921 1 0.27554577589035 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control WHAMM ENSG00000156232 CDS Human protein_coding chr15:83502180 chr15:83502165 synonymous SNV . 0 6 hm5C_associated_SNPs_11022 0 0 0 0 0 Nucleus 1 0.500232294782918 1 0.999535410434164 hm5C_site_13240 DeepMRMD:1;iRNA_m5C:0.999535410434164 13241 chr15 83502601 83502601 1 + C T rs142187765 83502611 + 83502591 83502631 41 ACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTA ACGCCATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTA < 41bp 1 0.0594370782729305 1 0.133764743804932 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WHAMM ENSG00000156232 UTR3 Human protein_coding chr15:83502611 chr15:83502601 . . 0 11 hm5C_associated_SNPs_11023 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_13241 DeepMRMD:1;iRNA_m5C:0.999536712157815 13242 chr15 83502601 83502601 1 + C T rs142187765 83502612 + 83502592 83502632 41 CGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTAC CGCCATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTAC < 41bp 1 0.295234924990612 1 0.523268520832062 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WHAMM ENSG00000156232 UTR3 Human protein_coding chr15:83502612 chr15:83502601 . . 0 10 hm5C_associated_SNPs_11024 0 0 0 0 0 Nucleus 1 0.500231680734898 0.953462958335876 0.999536638530205 hm5C_site_13242 DeepMRMD:0.953462958335876;iRNA_m5C:0.999536638530205 13243 chr15 83502601 83502601 1 + C T rs142187765 83502616 + 83502596 83502636 41 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGC ATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGC < 41bp 1 0.611431861683831 1 0.656529486179352 experiment 0.777136276632338 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WHAMM ENSG00000156232 UTR3 Human protein_coding chr15:83502616 chr15:83502601 . . 0 6 hm5C_associated_SNPs_11025 0 0 0 0 0 Nucleus 1 0.500231639630001 0.686941027641296 0.999536720739999 hm5C_site_13243 DeepMRMD:0.686941027641296;iRNA_m5C:0.999536720739999 13244 chr15 84789964 84789964 1 + A C rs374428768 84789972 + 84789952 84789992 41 GGAGTGCCATTGAAACATGTCCAAAAGGAGAGGAGCCAAGA GGAGTGCCATTGCAACATGTCCAAAAGGAGAGGAGCCAAGA < 41bp 1 0.415042538280214 1 0.253550261259079 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EFTUD1P1 ENSG00000259404 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:84789972 chr15:84789964 . . 0 13 hm5C_associated_SNPs_11026 0 0 0 0 1 unknown 1 0.500217416003944 1 0.999565167992111 hm5C_site_13244 DeepMRMD:1;iRNA_m5C:0.999565167992111 13245 chr15 84789983 84789983 1 + G C rs558947581 84789972 + 84789952 84789992 41 GGAGTGCCATTGAAACATGTCCAAAAGGAGAGGAGCCAAGA GGAGTGCCATTGAAACATGTCCAAAAGGAGACGAGCCAAGA < 41bp 1 0.380139852989042 1 0.234030991792679 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EFTUD1P1 ENSG00000259404 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:84789972 chr15:84789983 . . 0 32 hm5C_associated_SNPs_11027 0 0 0 0 1 unknown 1 0.500231643795873 1 0.999536712408254 hm5C_site_13245 DeepMRMD:1;iRNA_m5C:0.999536712408254 13246 chr15 85348168 85348168 1 + C T rs12440418 85348175 + 85348155 85348195 41 CCGAGAGGTTAAACGATGTGCAGAGGCTACCTGTAGTGATG CCGAGAGGTTAAATGATGTGCAGAGGCTACCTGTAGTGATG < 41bp 1 0.639568277328364 1 0.525286197662354 experiment 0.720863445343271 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF592 ENSG00000166716 UTR3 Human protein_coding chr15:85348175 chr15:85348168 . . 0 14 hm5C_associated_SNPs_11028 0 0 1 0 0 Cytosol 1 0.500231643921091 0.949427604675292 0.999536712157818 hm5C_site_13246 DeepMRMD:0.949427604675292;iRNA_m5C:0.999536712157818 13247 chr15 85923943 85923943 1 + G C rs571229939 85923949 + 85923929 85923969 41 TTTAGCCGCCTCCGGGGGAGCGGCCGCCTATTGTCTTTCTC TTTAGCCGCCTCCGCGGGAGCGGCCGCCTATTGTCTTTCTC < 41bp 1 0.34627750296263 1 0.362250208854675 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP13 ENSG00000170776 UTR5 Human protein_coding chr15:85923949 chr15:85923943 . . 0 15 hm5C_associated_SNPs_11030 0 0 1 0 1 Ribosome 1 0.500231643921128 1 0.999536712157744 hm5C_site_13247 DeepMRMD:1;iRNA_m5C:0.999536712157744 13248 chr15 86288456 86288456 1 + G T rs115161786 86288442 + 86288422 86288462 41 GCCTGGACGGACCCGGAGCCCCCGCATATCAGCAGTTCACC GCCTGGACGGACCCGGAGCCCCCGCATATCAGCATTTCACC < 41bp 1 0.208986345093375 1 0.0772379040718079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP13 ENSG00000259407 ncRNA_intronic Human antisense chr15:86288442 chr15:86288456 . . 0 35 hm5C_associated_SNPs_11031 0 0 1 0 0 Ribosome 1 0.500231643921039 1 0.999536712157922 hm5C_site_13248 DeepMRMD:1;iRNA_m5C:0.999536712157922 13249 chr15 86292078 86292078 1 + G A rs57922745 86292098 + 86292078 86292118 41 GGAGGGGCTTCTGCAGGAAGCACTCACCCCCCACACCTTCC AGAGGGGCTTCTGCAGGAAGCACTCACCCCCCACACCTTCC < 41bp 1 0.283010630524731 1 0.0691314041614532 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP13 ENSG00000259407 ncRNA_intronic Human antisense chr15:86292098 chr15:86292078 . . 0 1 hm5C_associated_SNPs_11032 0 0 0 0 0 Ribosome 1 0.500231643921076 1 0.999536712157847 hm5C_site_13249 DeepMRMD:1;iRNA_m5C:0.999536712157847 13250 chr15 86292114 86292114 1 + C G rs13225 86292098 + 86292078 86292118 41 GGAGGGGCTTCTGCAGGAAGCACTCACCCCCCACACCTTCC GGAGGGGCTTCTGCAGGAAGCACTCACCCCCCACACGTTCC < 41bp 1 0.273566200690274 1 0.0841392278671265 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP13 ENSG00000259407 ncRNA_intronic Human antisense chr15:86292098 chr15:86292114 . . 0 37 hm5C_associated_SNPs_11033 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13250 DeepMRMD:1;iRNA_m5C:0.999536712157815 13251 chr15 89015930 89015930 1 + T C rs9920196 89015924 + 89015904 89015944 41 GGAAAGAAATTTGAGGAGATCCCAATTGCACACATTAAAGC GGAAAGAAATTTGAGGAGATCCCAATCGCACACATTAAAGC < 41bp 1 0.470050551151895 1 0.220110327005386 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89015924 chr15:89015930 synonymous SNV . 0 27 hm5C_associated_SNPs_11034 0 0 1 0 2 Ribosome 1 0.500231643921013 1 0.999536712157974 hm5C_site_13251 DeepMRMD:1;iRNA_m5C:0.999536712157974 13252 chr15 89169653 89169653 1 + G A rs34649587 89169639 + 89169619 89169659 41 GGTCCTCCCCACTGCCCACCCCTTTCGGGGCAGCGACAGCA GGTCCTCCCCACTGCCCACCCCTTTCGGGGCAGCAACAGCA < 41bp 1 0.0385932328241099 1 0.071577250957489 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AEN ENSG00000181026 CDS Human protein_coding chr15:89169639 chr15:89169653 synonymous SNV . 0 35 hm5C_associated_SNPs_11035 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13252 DeepMRMD:1;iRNA_m5C:0.999536712157815 Alzheimer's disease or family history of Alzheimer's disease 13253 chr15 89169858 89169858 1 + A G rs8027765 89169857 + 89169837 89169877 41 TCCATTGTGAGCTACCATGGCAATGTCCTCTATGACAAGTA TCCATTGTGAGCTACCATGGCGATGTCCTCTATGACAAGTA < 41bp 1 0.287761423044934 1 0.399381220340729 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AEN ENSG00000181026 CDS Human protein_coding chr15:89169857 chr15:89169858 nonsynonymous SNV 0.658 0 22 hm5C_associated_SNPs_11036 0 0 1 0 0 Ribosome 1 0.500231641817109 1 0.999536716365781 hm5C_site_13253 DeepMRMD:1;iRNA_m5C:0.999536716365781 13254 chr15 89740295 89740295 1 + T C rs188662948 89740302 + 89740282 89740322 41 CAAAGGAGCCACCTGGGCGCCTGAGTGCCAACCCTCAGGGC CAAAGGAGCCACCCGGGCGCCTGAGTGCCAACCCTCAGGGC < 41bp 1 0.598441943878209 1 0.603996872901917 experiment 0.803116112243581 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABHD2 ENSG00000140526 UTR3 Human protein_coding chr15:89740302 chr15:89740295 . . 0 14 hm5C_associated_SNPs_11038 0 0 1 0 0 Nucleus 1 0.500231643921093 0.792006254196166 0.999536712157815 hm5C_site_13254 DeepMRMD:0.792006254196166;iRNA_m5C:0.999536712157815 13255 chr15 89835982 89835982 1 + C A rs28378332 89835978 + 89835958 89835998 41 TATAAGAATACAGTCATACCCTTACAGCAGGGAGAGGAGGA TATAAGAATACAGTCATACCCTTAAAGCAGGGAGAGGAGGA < 41bp 1 0.438281396881712 1 0.190776169300079 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout FANCI ENSG00000140525 CDS Human protein_coding chr15:89835978 chr15:89835982 nonsynonymous SNV 0.347 0 25 hm5C_associated_SNPs_11039 1 0 1 1 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_13255 DeepMRMD:1;iRNA_m5C:0.999536712157815 Fanconi anemia Fanconi anemia 13256 chr15 89859740 89859740 1 + C T rs574349233 89859726 + 89859706 89859746 41 TAATGTGAACTTTGGGGCTTCTGCTTCATTTTTACCCAACA TAATGTGAACTTTGGGGCTTCTGCTTCATTTTTATCCAACA < 41bp 1 0.283480376034581 1 0.26396831870079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FANCI;POLG ENSG00000140521;ENSG00000140525 UTR3 Human other chr15:89859726 chr15:89859740 . . 0 35 hm5C_associated_SNPs_11040 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13256 DeepMRMD:1;iRNA_m5C:0.999536712157815 13257 chr15 90159640 90159640 1 + T C rs187740323 90159641 + 90159621 90159661 41 GTGTTTACATTTTAGGTTATCACAAACTGCTGACTAAGAGT GTGTTTACATTTTAGGTTACCACAAACTGCTGACTAAGAGT < 41bp 1 0.261008797464182 1 0.447344958782196 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90159641 chr15:90159640 synonymous SNV . 0 20 hm5C_associated_SNPs_11041 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13257 DeepMRMD:1;iRNA_m5C:0.999536712157815 13258 chr15 90623263 90623263 1 + A G rs532686974 90623275 + 90623255 90623295 41 GCCAGCACAGGCCCAGGCATCCCAGCAAGGGAAGGAGAACA GCCAGCACGGGCCCAGGCATCCCAGCAAGGGAAGGAGAACA < 41bp 1 0.263144293746562 1 0.24369204044342 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF710-AS1 ENSG00000259291 ncRNA_intronic Human antisense chr15:90623275 chr15:90623263 . . 0 9 hm5C_associated_SNPs_11042 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13258 DeepMRMD:1;iRNA_m5C:0.999536712157815 13259 chr15 90624499 90624499 1 + G C rs73486399 90624506 + 90624486 90624526 41 GCCCCTGGAACCAGAGATGACAGGCCCAGGGCAGTGAAATA GCCCCTGGAACCACAGATGACAGGCCCAGGGCAGTGAAATA < 41bp 1 0.572576920374902 1 0.215302735567093 experiment 0.854846159250196 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF710-AS1 ENSG00000259291 ncRNA_intronic Human antisense chr15:90624506 chr15:90624499 . . 0 14 hm5C_associated_SNPs_11043 0 0 0 0 0 unknown 1 0.50023164392563 1 0.99953671214874 hm5C_site_13259 DeepMRMD:1;iRNA_m5C:0.99953671214874 13260 chr15 90771680 90771680 1 + C T rs200648029 90771692 + 90771672 90771712 41 CCACTCAACGGCCTAGGGCCCCCTAGCACCCCGCTCGATCA CCACTCAATGGCCTAGGGCCCCCTAGCACCCCGCTCGATCA < 41bp 1 0.259620127376047 1 0.101760357618332 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90771692 chr15:90771680 synonymous SNV . 0 9 hm5C_associated_SNPs_11044 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13260 DeepMRMD:1;iRNA_m5C:0.999536712157815 13261 chr15 90771704 90771704 1 + G A rs3751656 90771692 + 90771672 90771712 41 CCACTCAACGGCCTAGGGCCCCCTAGCACCCCGCTCGATCA CCACTCAACGGCCTAGGGCCCCCTAGCACCCCACTCGATCA < 41bp 1 0.238523287578176 1 0.128085523843765 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90771692 chr15:90771704 synonymous SNV . 0 33 hm5C_associated_SNPs_11045 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13261 DeepMRMD:1;iRNA_m5C:0.999536712157815 13262 chr15 90814664 90814664 1 + C G rs11073922 90814684 + 90814664 90814704 41 CTTATGCCAGGGCATGAAGCCTCATCTAAAGACCCAAATCA GTTATGCCAGGGCATGAAGCCTCATCTAAAGACCCAAATCA < 41bp 1 0.413876496424287 1 0.463406205177307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NGRN ENSG00000182768 CDS Human protein_coding chr15:90814684 chr15:90814664 nonsynonymous SNV 0.017 1 1 hm5C_associated_SNPs_11046 0 0 1 0 0 Ribosome 1 0.500231643926001 1 0.999536712147999 hm5C_site_13262 DeepMRMD:1;iRNA_m5C:0.999536712147999 13263 chr15 90931486 90931486 1 + C A rs550262812 90931505 + 90931485 90931525 41 GCCCGCGCACTTGGCAGGAGCTGTAGCTACCGCCGTCCGCG GACCGCGCACTTGGCAGGAGCTGTAGCTACCGCCGTCCGCG < 41bp 1 0.678235476499219 1 0.374939024448395 experiment 0.643529047001561 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IQGAP1 ENSG00000140575 UTR5 Human protein_coding chr15:90931505 chr15:90931486 . . 0 2 hm5C_associated_SNPs_11047 0 0 1 0 0 Nucleus 1 0.500231643921112 1 0.999536712157775 hm5C_site_13263 DeepMRMD:1;iRNA_m5C:0.999536712157775 13264 chr15 90931497 90931497 1 + G A rs535666736 90931505 + 90931485 90931525 41 GCCCGCGCACTTGGCAGGAGCTGTAGCTACCGCCGTCCGCG GCCCGCGCACTTAGCAGGAGCTGTAGCTACCGCCGTCCGCG < 41bp 1 0.632679578800878 1 0.369190692901611 experiment 0.734640842398244 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IQGAP1 ENSG00000140575 UTR5 Human protein_coding chr15:90931505 chr15:90931497 . . 0 13 hm5C_associated_SNPs_11048 0 0 1 0 0 Nucleus 1 0.500231635569942 1 0.999536728860115 hm5C_site_13264 DeepMRMD:1;iRNA_m5C:0.999536728860115 13265 chr15 91035827 91035827 1 + G A rs112274735 91035817 + 91035797 91035837 41 GTACCGACAGAGGAGAAAGGCCGAACTAGTGAAACTGCAAC GTACCGACAGAGGAGAAAGGCCGAACTAGTAAAACTGCAAC < 41bp 1 0.335722795640352 1 0.362477362155914 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:91035817 chr15:91035827 synonymous SNV . 0 31 hm5C_associated_SNPs_11049 0 0 1 0 1 Nucleus 1 0.500231643919343 1 0.999536712161315 hm5C_site_13265 DeepMRMD:1;iRNA_m5C:0.999536712161315 13266 chr15 91045408 91045408 1 + G A rs3540 91045405 + 91045385 91045425 41 CCTCCCAAGAGTTTGGACTGCCCGTCAGATTGTTGCTGCAC CCTCCCAAGAGTTTGGACTGCCCATCAGATTGTTGCTGCAC < 41bp 1 0.233937860113884 1 0.0897901058197021 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IQGAP1 ENSG00000140575 UTR3 Human protein_coding chr15:91045405 chr15:91045408 . . 0 24 hm5C_associated_SNPs_11050 0 1 1 0 0 Nucleus 1 0.500231643921073 1 0.999536712157854 hm5C_site_13266 DeepMRMD:1;iRNA_m5C:0.999536712157854 13267 chr15 91045408 91045408 1 + G A rs3540 91045406 + 91045386 91045426 41 CTCCCAAGAGTTTGGACTGCCCGTCAGATTGTTGCTGCACA CTCCCAAGAGTTTGGACTGCCCATCAGATTGTTGCTGCACA < 41bp 1 0.10658289234369 1 0.0908144116401672 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IQGAP1 ENSG00000140575 UTR3 Human protein_coding chr15:91045406 chr15:91045408 . . 0 23 hm5C_associated_SNPs_11051 0 1 1 0 0 Nucleus 1 0.500231651853026 1 0.999536696293948 hm5C_site_13267 DeepMRMD:1;iRNA_m5C:0.999536696293948 13268 chr15 91045408 91045408 1 + G A rs3540 91045407 + 91045387 91045427 41 TCCCAAGAGTTTGGACTGCCCGTCAGATTGTTGCTGCACAT TCCCAAGAGTTTGGACTGCCCATCAGATTGTTGCTGCACAT < 41bp 1 0.627946418401032 1 0.130007594823837 experiment 0.744107163197937 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IQGAP1 ENSG00000140575 UTR3 Human protein_coding chr15:91045407 chr15:91045408 . . 0 22 hm5C_associated_SNPs_11052 0 1 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_13268 DeepMRMD:1;iRNA_m5C:0.999536712157815 13269 chr15 91045419 91045419 1 + G T rs3539 91045405 + 91045385 91045425 41 CCTCCCAAGAGTTTGGACTGCCCGTCAGATTGTTGCTGCAC CCTCCCAAGAGTTTGGACTGCCCGTCAGATTGTTTCTGCAC < 41bp 1 0.435890789408962 1 0.0739047527313232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IQGAP1 ENSG00000140575 UTR3 Human protein_coding chr15:91045405 chr15:91045419 . . 0 35 hm5C_associated_SNPs_11053 0 0 1 0 0 Nucleus 1 0.500231643918187 1 0.999536712163627 hm5C_site_13269 DeepMRMD:1;iRNA_m5C:0.999536712163627 13270 chr15 91045419 91045419 1 + G T rs3539 91045406 + 91045386 91045426 41 CTCCCAAGAGTTTGGACTGCCCGTCAGATTGTTGCTGCACA CTCCCAAGAGTTTGGACTGCCCGTCAGATTGTTTCTGCACA < 41bp 1 0.152128286997693 1 0.039366751909256 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IQGAP1 ENSG00000140575 UTR3 Human protein_coding chr15:91045406 chr15:91045419 . . 0 34 hm5C_associated_SNPs_11054 0 0 1 0 0 Nucleus 1 0.500231643742194 1 0.999536712515612 hm5C_site_13270 DeepMRMD:1;iRNA_m5C:0.999536712515612 13271 chr15 91045419 91045419 1 + G T rs3539 91045407 + 91045387 91045427 41 TCCCAAGAGTTTGGACTGCCCGTCAGATTGTTGCTGCACAT TCCCAAGAGTTTGGACTGCCCGTCAGATTGTTTCTGCACAT < 41bp 1 0.652652309256973 1 0.102839171886444 experiment 0.694695381486054 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IQGAP1 ENSG00000140575 UTR3 Human protein_coding chr15:91045407 chr15:91045419 . . 0 33 hm5C_associated_SNPs_11055 0 0 1 0 0 Nucleus 1 0.500231643921086 1 0.999536712157829 hm5C_site_13271 DeepMRMD:1;iRNA_m5C:0.999536712157829 13272 chr15 91187750 91187750 1 + A C rs77057982 91187758 + 91187738 91187778 41 CCTACTGCCCCAAAGGCGTTCTCCAGGTGACTTGTGAAAAC CCTACTGCCCCACAGGCGTTCTCCAGGTGACTTGTGAAAAC < 41bp 1 0.687489456950709 1 0.875777304172516 experiment 0.625021086098583 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRTC3-AS1 ENSG00000259736 ncRNA_intronic Human antisense chr15:91187758 chr15:91187750 . . 0 13 hm5C_associated_SNPs_11058 0 0 1 0 0 unknown 1 0.500231643773959 0.248445391654968 0.999536712452082 hm5C_site_13272 DeepMRMD:0.248445391654968;iRNA_m5C:0.999536712452082 13273 chr15 91424649 91424649 1 + C A rs543689016 91424655 + 91424635 91424675 41 GCCAGCGTCTGCGCCCCCTGCCACGCCTCATGTGCCACATG GCCAGCGTCTGCGCACCCTGCCACGCCTCATGTGCCACATG < 41bp 1 0.161882309662667 1 0.159842699766159 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FURIN ENSG00000140564 CDS Human protein_coding chr15:91424655 chr15:91424649 synonymous SNV . 0 15 hm5C_associated_SNPs_11059 0 0 1 0 0 Ribosome 1 0.500232080589663 1 0.999535838820674 hm5C_site_13273 DeepMRMD:1;iRNA_m5C:0.999535838820674 13274 chr15 91425232 91425232 1 + C T rs6227 91425252 + 91425232 91425272 41 CTTCCCATCCTACCCTCGGGCCCACCTGGCCACCTGAGGTG TTTCCCATCCTACCCTCGGGCCCACCTGGCCACCTGAGGTG < 41bp 1 0.0852843963589985 1 0.0298113524913788 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FURIN ENSG00000140564 UTR3 Human protein_coding chr15:91425252 chr15:91425232 . . 0 1 hm5C_associated_SNPs_11060 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13274 DeepMRMD:1;iRNA_m5C:0.999536712157815 13275 chr15 91448684 91448684 1 + C G rs143801767 91448697 + 91448677 91448717 41 CCATCTCCCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG CCATCTCGCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG < 41bp 1 0.302359985808757 1 0.242849111557007 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91448697 chr15:91448684 synonymous SNV . 0 8 hm5C_associated_SNPs_11061 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_13275 DeepMRMD:1;iRNA_m5C:0.999536712157815 13276 chr15 91478493 91478493 1 + G A rs556780967 91478506 + 91478486 91478526 41 GCGTCCCGAACCCAGACTCGCCCCGCCCCAGAGACTGCGCC GCGTCCCAAACCCAGACTCGCCCCGCCCCAGAGACTGCGCC < 41bp 1 0.444695503459655 1 0.0888560712337494 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91478506 chr15:91478493 . . 0 8 hm5C_associated_SNPs_11062 0 0 0 0 1 Nucleus 1 0.500231644451278 1 0.999536711097445 hm5C_site_13276 DeepMRMD:1;iRNA_m5C:0.999536711097445 13277 chr15 91478493 91478493 1 + G A rs556780967 91478508 + 91478488 91478528 41 GTCCCGAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTG GTCCCAAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTG < 41bp 1 0.409995952796404 1 0.202614456415176 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91478508 chr15:91478493 . . 0 6 hm5C_associated_SNPs_11063 0 0 0 0 1 Nucleus 1 0.500231618899795 1 0.99953676220041 hm5C_site_13277 DeepMRMD:1;iRNA_m5C:0.99953676220041 13278 chr15 91478493 91478493 1 + G A rs556780967 91478509 + 91478489 91478529 41 TCCCGAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTGC TCCCAAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTGC < 41bp 1 0.491999246192124 1 0.142234712839127 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91478509 chr15:91478493 . . 0 5 hm5C_associated_SNPs_11064 0 0 0 0 1 Nucleus 1 0.500231625336587 1 0.999536749326825 hm5C_site_13278 DeepMRMD:1;iRNA_m5C:0.999536749326825 13279 chr15 91478493 91478493 1 + G A rs556780967 91478511 + 91478491 91478531 41 CCGAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTGCGC CCAAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTGCGC < 41bp 1 0.546997351831263 1 0.145231932401657 experiment 0.906005296337475 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91478511 chr15:91478493 . . 0 3 hm5C_associated_SNPs_11065 0 0 0 0 1 Nucleus 1 0.500231643907655 1 0.999536712184689 hm5C_site_13279 DeepMRMD:1;iRNA_m5C:0.999536712184689 13280 chr15 91478493 91478493 1 + G A rs556780967 91478512 + 91478492 91478532 41 CGAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTGCGCG CAAACCCAGACTCGCCCCGCCCCAGAGACTGCGCCTGCGCG < 41bp 1 0.374808760322562 1 0.405648291110992 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91478512 chr15:91478493 . . 0 2 hm5C_associated_SNPs_11066 0 0 0 0 1 Nucleus 1 0.50023164392147 1 0.99953671215706 hm5C_site_13280 DeepMRMD:1;iRNA_m5C:0.99953671215706 13281 chr15 91478544 91478544 1 + A C rs17635974 91478525 + 91478505 91478545 41 GCCCCGCCCCAGAGACTGCGCCTGCGCGGGCACGAGACAAC GCCCCGCCCCAGAGACTGCGCCTGCGCGGGCACGAGACACC < 41bp 1 0.383238440033824 1 0.130779802799225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UNC45A ENSG00000140553 UTR5 Human protein_coding chr15:91478525 chr15:91478544 . . 0 40 hm5C_associated_SNPs_11067 0 0 1 0 2 Nucleus 1 0.50023164392111 1 0.999536712157781 hm5C_site_13281 DeepMRMD:1;iRNA_m5C:0.999536712157781 13282 chr15 91503684 91503684 1 + C G rs61742976 91503678 + 91503658 91503698 41 ACTGGATCTCCCCATGGGCTCAGATGCAGTCAAGGCCAGCT ACTGGATCTCCCCATGGGCTCAGATGGAGTCAAGGCCAGCT < 41bp 1 0.520422714857089 1 0.470725238323212 experiment 0.959154570285822 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91503678 chr15:91503684 nonsynonymous SNV 0.700 2 27 hm5C_associated_SNPs_11068 0 0 1 0 1 Ribosome 1 0.500231643831471 1 0.999536712337058 hm5C_site_13282 DeepMRMD:1;iRNA_m5C:0.999536712337058 13283 chr15 93482864 93482864 1 + A G rs117844037 93482846 + 93482826 93482866 41 TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAA TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAGAA < 41bp 1 0.357797454336083 1 0.496338993310928 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482846 chr15:93482864 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_11069 2 0 1 0 2 Nucleus 1 0.500231643945525 1 0.999536712108951 hm5C_site_13283 DeepMRMD:1;iRNA_m5C:0.999536712108951 not specified not specified 13284 chr15 93482864 93482864 1 + A G rs117844037 93482848 + 93482828 93482868 41 TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAAAG TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAGAAAG < 41bp 1 0.570931754251093 1 0.807113170623779 experiment 0.858136491497813 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482848 chr15:93482864 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_11070 2 0 1 0 2 Nucleus 1 0.500231795388683 0.385773658752442 0.999536409222634 hm5C_site_13284 DeepMRMD:0.385773658752442;iRNA_m5C:0.999536409222634 not specified not specified 13285 chr15 93570997 93570997 1 + T C rs58542701 93571016 + 93570996 93571036 41 GTGCCCCACTCATCTGGGGACAGATGGTTTTTCTTTATTGT GCGCCCCACTCATCTGGGGACAGATGGTTTTTCTTTATTGT < 41bp 1 0.1641630797754 1 0.421973764896393 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CHD2 ENSG00000173575 UTR3 Human protein_coding chr15:93571016 chr15:93570997 . . 0 2 hm5C_associated_SNPs_11072 0 0 1 0 0 Nucleus 1 0.500231643921089 1 0.999536712157821 hm5C_site_13285 DeepMRMD:1;iRNA_m5C:0.999536712157821 13286 chr15 93571021 93571021 1 + G A rs184443272 93571016 + 93570996 93571036 41 GTGCCCCACTCATCTGGGGACAGATGGTTTTTCTTTATTGT GTGCCCCACTCATCTGGGGACAGATAGTTTTTCTTTATTGT < 41bp 1 0.126702182369043 1 0.320834308862686 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CHD2 ENSG00000173575 UTR3 Human protein_coding chr15:93571016 chr15:93571021 . . 0 26 hm5C_associated_SNPs_11073 0 0 1 0 0 Nucleus 1 0.500231300391276 1 0.999537399217448 hm5C_site_13286 DeepMRMD:1;iRNA_m5C:0.999537399217448 13287 chr15 94841672 94841672 1 + G A rs143256791 94841673 + 94841653 94841693 41 TGATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCGGC TGATCTCCTGGAGGCTGAGACCTTGGCCCCAGAGGGCCGGC < 41bp 1 0.21047676410543 1 0.0561254024505615 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841673 chr15:94841672 nonsynonymous SNV 0.664 0 20 hm5C_associated_SNPs_11074 0 0 0 0 0 exosome 1 0.500231643921088 1 0.999536712157824 hm5C_site_13287 DeepMRMD:1;iRNA_m5C:0.999536712157824 13288 chr15 94841691 94841691 1 + G A rs61737195 94841673 + 94841653 94841693 41 TGATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCGGC TGATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCAGC < 41bp 1 0.185663246634915 1 0.0683077573776245 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841673 chr15:94841691 nonsynonymous SNV 0.780 0 39 hm5C_associated_SNPs_11076 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13288 DeepMRMD:1;iRNA_m5C:0.999536712157815 13289 chr15 94841691 94841691 1 + G A rs61737195 94841674 + 94841654 94841694 41 GATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCGGCC GATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCAGCC < 41bp 1 0.693544566382949 1 0.48346358537674 experiment 0.612910867234102 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841674 chr15:94841691 nonsynonymous SNV 0.780 0 38 hm5C_associated_SNPs_11077 0 0 0 0 0 exosome 1 0.500231647876907 1 0.999536704246187 hm5C_site_13289 DeepMRMD:1;iRNA_m5C:0.999536704246187 13290 chr15 95022955 95022955 1 + G C rs578107796 95022962 + 95022942 95022982 41 TCACTTGAAAAATGAGGGTCCCATGAAAGTATTTGGTTGCC TCACTTGAAAAATCAGGGTCCCATGAAAGTATTTGGTTGCC < 41bp 1 0.0606743811616 1 0.123087733983994 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 UTR3 Human protein_coding chr15:95022962 chr15:95022955 . . 0 14 hm5C_associated_SNPs_11078 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13290 DeepMRMD:1;iRNA_m5C:0.999536712157815 13291 chr15 96875667 96875667 1 + G A rs199765586 96875664 + 96875644 96875684 41 AAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGC AAGCGCAGCGTGCGGAGGAACCTAAGCTACACGTGCCGCGC < 41bp 1 0.323241139505855 1 0.172720164060593 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F2 ENSG00000185551 CDS Human protein_coding chr15:96875664 chr15:96875667 synonymous SNV . 0 24 hm5C_associated_SNPs_11079 0 0 1 0 0 Cytoplasm 1 0.500231644111563 1 0.999536711776874 hm5C_site_13291 DeepMRMD:1;iRNA_m5C:0.999536711776874 13292 chr15 99671591 99671591 1 + T C rs187807624 99671610 + 99671590 99671630 41 GTGGATGCCGATCGGTTAGACCTGGAGGAGCTGAGCAAAGA GCGGATGCCGATCGGTTAGACCTGGAGGAGCTGAGCAAAGA < 41bp 1 0.192806349085738 1 0.209855377674103 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99671610 chr15:99671591 nonsynonymous SNV 0.149 2 2 hm5C_associated_SNPs_11080 0 0 0 0 0 exosome 1 0.50023164407819 1 0.99953671184362 hm5C_site_13292 DeepMRMD:1;iRNA_m5C:0.99953671184362 13293 chr15 99671610 99671610 1 + C T rs192428760 99671620 + 99671600 99671640 41 ATCGGTTAGACCTGGAGGAGCTGAGCAAAGATGAGGCCAGT ATCGGTTAGATCTGGAGGAGCTGAGCAAAGATGAGGCCAGT < 41bp 1 0.344179621675165 1 0.19559720158577 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99671620 chr15:99671610 synonymous SNV . 0 11 hm5C_associated_SNPs_11081 0 0 0 0 0 exosome 1 0.500231642431063 1 0.999536715137875 hm5C_site_13293 DeepMRMD:1;iRNA_m5C:0.999536715137875 13294 chr15 99671617 99671617 1 + G T rs375897773 99671610 + 99671590 99671630 41 GTGGATGCCGATCGGTTAGACCTGGAGGAGCTGAGCAAAGA GTGGATGCCGATCGGTTAGACCTGGAGTAGCTGAGCAAAGA < 41bp 1 0.161413681933012 1 0.242735505104065 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99671610 chr15:99671617 stopgain 0.328 0 28 hm5C_associated_SNPs_11082 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13294 DeepMRMD:1;iRNA_m5C:0.999536712157815 13295 chr15 99671617 99671617 1 + G T rs375897773 99671620 + 99671600 99671640 41 ATCGGTTAGACCTGGAGGAGCTGAGCAAAGATGAGGCCAGT ATCGGTTAGACCTGGAGTAGCTGAGCAAAGATGAGGCCAGT < 41bp 1 0.442871825838693 1 0.176216572523117 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99671620 chr15:99671617 stopgain 0.328 0 18 hm5C_associated_SNPs_11083 0 0 0 0 0 exosome 1 0.500233192393423 1 0.999533615213153 hm5C_site_13295 DeepMRMD:1;iRNA_m5C:0.999533615213153 13296 chr15 99671618 99671618 1 + A T rs370918080 99671610 + 99671590 99671630 41 GTGGATGCCGATCGGTTAGACCTGGAGGAGCTGAGCAAAGA GTGGATGCCGATCGGTTAGACCTGGAGGTGCTGAGCAAAGA < 41bp 1 0.173140361316332 1 0.212699234485626 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99671610 chr15:99671618 nonsynonymous SNV 0.327 1 29 hm5C_associated_SNPs_11084 0 0 0 0 0 exosome 1 0.500231643920925 1 0.99953671215815 hm5C_site_13296 DeepMRMD:1;iRNA_m5C:0.99953671215815 13297 chr15 99671618 99671618 1 + A T rs370918080 99671620 + 99671600 99671640 41 ATCGGTTAGACCTGGAGGAGCTGAGCAAAGATGAGGCCAGT ATCGGTTAGACCTGGAGGTGCTGAGCAAAGATGAGGCCAGT < 41bp 1 0.316025154844137 1 0.13604336977005 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99671620 chr15:99671618 nonsynonymous SNV 0.327 1 19 hm5C_associated_SNPs_11085 0 0 0 0 0 exosome 1 0.500231653561646 1 0.999536692876708 hm5C_site_13297 DeepMRMD:1;iRNA_m5C:0.999536692876708 13298 chr15 99673019 99673019 1 + C G rs139332546 99673023 + 99673003 99673043 41 GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGC GGAGCTCTCGGTGTGTGTGACCGTGGTTCCTGGAGAGACGC < 41bp 1 0.247120948041463 1 0.102363228797913 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99673023 chr15:99673019 nonsynonymous SNV 0.049 2 17 hm5C_associated_SNPs_11086 0 0 1 0 1 exosome 1 0.50023302990058 1 0.999533940198839 hm5C_site_13298 DeepMRMD:1;iRNA_m5C:0.999533940198839 13299 chr15 99674447 99674447 1 + A C rs140153935 99674467 + 99674447 99674487 41 ATCTCTCCTGCAGCCCAGCACCGAGATACCCAGGACGGGCC CTCTCTCCTGCAGCCCAGCACCGAGATACCCAGGACGGGCC < 41bp 1 0.356235336901132 1 0.393993586301804 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNM ENSG00000182253 UTR3 Human protein_coding chr15:99674467 chr15:99674447 . . 0 1 hm5C_associated_SNPs_11087 0 0 0 0 0 exosome 1 0.500231643927448 1 0.999536712145103 hm5C_site_13299 DeepMRMD:1;iRNA_m5C:0.999536712145103 13300 chr15 99674468 99674468 1 + C A rs71403425 99674467 + 99674447 99674487 41 ATCTCTCCTGCAGCCCAGCACCGAGATACCCAGGACGGGCC ATCTCTCCTGCAGCCCAGCACAGAGATACCCAGGACGGGCC < 41bp 1 0.641644327661109 1 0.509227931499481 experiment 0.716711344677783 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNM ENSG00000182253 UTR3 Human protein_coding chr15:99674467 chr15:99674468 . . 0 22 hm5C_associated_SNPs_11088 0 0 0 0 0 exosome 1 0.500232061273577 0.981544137001038 0.999535877452846 hm5C_site_13300 DeepMRMD:0.981544137001038;iRNA_m5C:0.999535877452846 13301 chr15 99674504 99674504 1 + C T rs547828967 99674506 + 99674486 99674526 41 CCTGGGGGGCGAGAAAGGCCCCCATGCTCATGGGCCGCGGA CCTGGGGGGCGAGAAAGGTCCCCATGCTCATGGGCCGCGGA < 41bp 1 0.278615535767781 1 0.101974189281464 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control SYNM ENSG00000182253 UTR3 Human protein_coding chr15:99674506 chr15:99674504 . . 0 19 hm5C_associated_SNPs_11090 0 0 0 0 0 exosome 1 0.500231643496738 1 0.999536713006525 hm5C_site_13301 DeepMRMD:1;iRNA_m5C:0.999536713006525 13302 chr15 99674504 99674504 1 + C T rs547828967 99674507 + 99674487 99674527 41 CTGGGGGGCGAGAAAGGCCCCCATGCTCATGGGCCGCGGAG CTGGGGGGCGAGAAAGGTCCCCATGCTCATGGGCCGCGGAG < 41bp 1 0.317515694173177 1 0.122247904539108 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SYNM ENSG00000182253 UTR3 Human protein_coding chr15:99674507 chr15:99674504 . . 0 18 hm5C_associated_SNPs_11091 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13302 DeepMRMD:1;iRNA_m5C:0.999536712157815 13303 chr15 99674504 99674504 1 + C T rs547828967 99674508 + 99674488 99674528 41 TGGGGGGCGAGAAAGGCCCCCATGCTCATGGGCCGCGGAGT TGGGGGGCGAGAAAGGTCCCCATGCTCATGGGCCGCGGAGT < 41bp 1 0.325579732075056 1 0.261574864387512 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control SYNM ENSG00000182253 UTR3 Human protein_coding chr15:99674508 chr15:99674504 . . 0 17 hm5C_associated_SNPs_11092 0 0 0 0 0 exosome 1 0.500231698371181 1 0.999536603257638 hm5C_site_13303 DeepMRMD:1;iRNA_m5C:0.999536603257638 13304 chr15 99791683 99791683 1 + G A rs567260285 99791692 + 99791672 99791712 41 CCGCCCCGCCCGCCGTCCCCCGCTTGGCTTCCAGCGCCGCT CCGCCCCGCCCACCGTCCCCCGCTTGGCTTCCAGCGCCGCT < 41bp 1 0.473077280490991 1 0.0750777423381805 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC28 ENSG00000168904 UTR5 Human protein_coding chr15:99791692 chr15:99791683 . . 0 12 hm5C_associated_SNPs_11093 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13304 DeepMRMD:1;iRNA_m5C:0.999536712157815 13305 chr15 99791695 99791695 1 + T C rs3743238 99791692 + 99791672 99791712 41 CCGCCCCGCCCGCCGTCCCCCGCTTGGCTTCCAGCGCCGCT CCGCCCCGCCCGCCGTCCCCCGCCTGGCTTCCAGCGCCGCT < 41bp 1 0.699534833011643 1 0.129376530647278 experiment 0.600930333976714 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC28 ENSG00000168904 UTR5 Human protein_coding chr15:99791692 chr15:99791695 . . 0 24 hm5C_associated_SNPs_11094 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13305 DeepMRMD:1;iRNA_m5C:0.999536712157815 13306 chr15 99797948 99797948 1 + G C rs183220485 99797953 + 99797933 99797973 41 AGGATCTGGGTAAAAGTAGACAAGGCTCAAGGATGGATGAT AGGATCTGGGTAAAACTAGACAAGGCTCAAGGATGGATGAT < 41bp 1 0.357614765557817 1 0.403533548116684 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSP90B2P ENSG00000259706 ncRNA_exonic Human processed_pseudogene chr15:99797953 chr15:99797948 . . 0 16 hm5C_associated_SNPs_11095 0 0 0 0 0 unknown 1 0.500231643431827 1 0.999536713136346 hm5C_site_13306 DeepMRMD:1;iRNA_m5C:0.999536713136346 13307 chr15 99797972 99797972 1 + A G rs550088130 99797953 + 99797933 99797973 41 AGGATCTGGGTAAAAGTAGACAAGGCTCAAGGATGGATGAT AGGATCTGGGTAAAAGTAGACAAGGCTCAAGGATGGATGGT < 41bp 1 0.378556995409988 1 0.732501983642578 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSP90B2P ENSG00000259706 ncRNA_exonic Human processed_pseudogene chr15:99797953 chr15:99797972 . . 0 40 hm5C_associated_SNPs_11096 0 0 1 0 0 unknown 1 0.500231643747374 0.534996032714844 0.999536712505251 hm5C_site_13307 DeepMRMD:0.534996032714844;iRNA_m5C:0.999536712505251 13308 chr15 100106195 100106195 1 + G C rs547797211 100106206 + 100106186 100106226 41 GGGATCCGTGCGCGGATGTCCCGGCGAGTCCCGGGCTGAAA GGGATCCGTCCGCGGATGTCCCGGCGAGTCCCGGGCTGAAA < 41bp 1 0.586708916882923 1 0.836250424385071 experiment 0.826582166234154 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MEF2A ENSG00000068305 UTR5 Human protein_coding chr15:100106206 chr15:100106195 . . 0 10 hm5C_associated_SNPs_11097 0 0 1 0 0 Endoplasmic reticulum 1 0.50023163020059 0.327499151229858 0.99953673959882 hm5C_site_13308 DeepMRMD:0.327499151229858;iRNA_m5C:0.99953673959882 13309 chr15 100106199 100106199 1 + G C rs535240545 100106206 + 100106186 100106226 41 GGGATCCGTGCGCGGATGTCCCGGCGAGTCCCGGGCTGAAA GGGATCCGTGCGCCGATGTCCCGGCGAGTCCCGGGCTGAAA < 41bp 1 0.590071151681478 1 0.900911331176758 experiment 0.819857696637045 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MEF2A ENSG00000068305 UTR5 Human protein_coding chr15:100106206 chr15:100106199 . . 0 14 hm5C_associated_SNPs_11098 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643377044 0.198177337646484 0.999536713245913 hm5C_site_13309 DeepMRMD:0.198177337646484;iRNA_m5C:0.999536713245913 13310 chr15 100106208 100106208 1 + G A rs553595669 100106206 + 100106186 100106226 41 GGGATCCGTGCGCGGATGTCCCGGCGAGTCCCGGGCTGAAA GGGATCCGTGCGCGGATGTCCCAGCGAGTCCCGGGCTGAAA < 41bp 1 0.460350344235114 1 0.396528035402298 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MEF2A ENSG00000068305 UTR5 Human protein_coding chr15:100106206 chr15:100106208 . . 0 23 hm5C_associated_SNPs_11099 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643915972 1 0.999536712168056 hm5C_site_13310 DeepMRMD:1;iRNA_m5C:0.999536712168056 13311 chr15 100106220 100106220 1 + G A rs575258085 100106206 + 100106186 100106226 41 GGGATCCGTGCGCGGATGTCCCGGCGAGTCCCGGGCTGAAA GGGATCCGTGCGCGGATGTCCCGGCGAGTCCCGGACTGAAA < 41bp 1 0.590911025742828 1 0.783976674079895 experiment 0.818177948514345 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MEF2A ENSG00000068305 UTR5 Human protein_coding chr15:100106206 chr15:100106220 . . 0 35 hm5C_associated_SNPs_11100 0 0 1 0 1 Endoplasmic reticulum 1 0.500229221352264 0.43204665184021 0.999541557295471 hm5C_site_13311 DeepMRMD:0.43204665184021;iRNA_m5C:0.999541557295471 13312 chr15 101169694 101169694 1 + A G rs61752833 101169701 + 101169681 101169721 41 CTCTTCACTATGCAGCCATGCATGGCCGGGCCCGCATTGCA CTCTTCACTATGCGGCCATGCATGGCCGGGCCCGCATTGCA < 41bp 1 0.462509259758373 1 0.0504675805568695 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASB7 ENSG00000183475 CDS Human protein_coding chr15:101169701 chr15:101169694 synonymous SNV . 0 14 hm5C_associated_SNPs_11101 0 0 1 0 1 Ribosome 1 0.500231643903012 1 0.999536712193976 hm5C_site_13312 DeepMRMD:1;iRNA_m5C:0.999536712193976 13313 chr15 101448628 101448628 1 + C T rs145659258 101448616 + 101448596 101448636 41 CTTCCATTCTTTTCTAGGATCAACTGCTACAACGCCCTCTA CTTCCATTCTTTTCTAGGATCAACTGCTACAATGCCCTCTA < 41bp 1 0.359728052462732 1 0.152811139822006 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101448616 chr15:101448628 synonymous SNV . 0 33 hm5C_associated_SNPs_11104 0 0 0 0 2 Nucleus 1 0.500231643921117 1 0.999536712157765 hm5C_site_13313 DeepMRMD:1;iRNA_m5C:0.999536712157765 13314 chr15 101455269 101455269 1 + G A rs137974961 101455251 + 101455231 101455271 41 TTTAAACCAGATCCTGGAGACAGTGAGATACTCAGGGCGTT TTTAAACCAGATCCTGGAGACAGTGAGATACTCAGGGCATT < 41bp 1 0.462807139527553 1 0.0906725823879242 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC101927751 ENSG00000259583 ncRNA_exonic Human antisense chr15:101455251 chr15:101455269 . . 0 39 hm5C_associated_SNPs_11105 0 0 0 0 0 unknown 1 0.500231643924071 1 0.999536712151858 hm5C_site_13314 DeepMRMD:1;iRNA_m5C:0.999536712151858 13315 chr15 101456202 101456202 1 + A C rs1802602 101456213 + 101456193 101456233 41 AACAAAAACAAATGTGTTATCCGACGGATACTTTTATGGTT AACAAAAACCAATGTGTTATCCGACGGATACTTTTATGGTT < 41bp 1 0.263730541983707 1 0.235476076602936 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC101927751 ENSG00000259583 ncRNA_intronic Human antisense chr15:101456213 chr15:101456202 . . 0 10 hm5C_associated_SNPs_11106 0 0 0 0 0 unknown 1 0.500231643920281 1 0.999536712159439 hm5C_site_13315 DeepMRMD:1;iRNA_m5C:0.999536712159439 13316 chr16 107162 107162 1 + C G rs10266 107163 + 107143 107183 41 AGCCTCCAGACAGGACAACCCTCTTCATCACTGGTGGCTGA AGCCTCCAGACAGGACAACGCTCTTCATCACTGGTGGCTGA < 41bp 1 0.395314595047226 1 0.0434209406375885 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRNP25 ENSG00000161981 UTR3 Human protein_coding chr16:107163 chr16:107162 . . 0 20 hm5C_associated_SNPs_11107 0 0 1 2 1 Ribosome 1 0.500231684153637 1 0.999536631692726 hm5C_site_13316 DeepMRMD:1;iRNA_m5C:0.999536631692726 13317 chr16 133280 133280 1 + G A rs2266608 133261 + 133241 133281 41 ACATCTCCAGCCAGGGTGAGCAGTGCTGGGGCACGGGGGGT ACATCTCCAGCCAGGGTGAGCAGTGCTGGGGCACGGGGGAT < 41bp 1 0.28506617193806 1 0.350021839141846 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MPG ENSG00000103152 intronic Human protein_coding chr16:133261 chr16:133280 . . 0 40 hm5C_associated_SNPs_11108 0 0 1 0 1 Ribosome 1 0.500231621986567 1 0.999536756026866 hm5C_site_13317 DeepMRMD:1;iRNA_m5C:0.999536756026866 13318 chr16 309998 309998 1 + C T rs78001048 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG CTCTCCCTGCACCTTTGCAGCTGTTGTGTCGGGGGCCAACG < 41bp 1 0.351628464761484 1 0.0204946100711823 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309998 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_11109 0 0 1 0 1 Ribosome 1 0.500231643398233 1 0.999536713203534 hm5C_site_13318 DeepMRMD:1;iRNA_m5C:0.999536713203534 13319 chr16 310005 310005 1 + G A rs13335497 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG CTCTCCCTGCACCTTTGCAGCTGCTGTGTCAGGGGCCAACG < 41bp 1 0.602454296230401 1 0.0297152101993561 experiment 0.795091407539199 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:310005 synonymous SNV . 0 31 hm5C_associated_SNPs_11110 0 0 1 0 1 Ribosome 1 0.500231651354156 1 0.999536697291688 hm5C_site_13319 DeepMRMD:1;iRNA_m5C:0.999536697291688 13320 chr16 457007 457007 1 + T C rs141804536 457019 + 456999 457039 41 TATTGGGTTCTGGGAGGGACCTTCCTGTTTGGGGGTAATGT TATTGGGTCCTGGGAGGGACCTTCCTGTTTGGGGGTAATGT < 41bp 1 0.020426249497427 1 0.0797382295131683 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DECR2 ENSG00000103202;ENSG00000242612 intronic Human other chr16:457019 chr16:457007 . . 0 9 hm5C_associated_SNPs_11112 0 0 1 0 1 Cytosol 1 0.500231644787754 1 0.999536710424491 hm5C_site_13320 DeepMRMD:1;iRNA_m5C:0.999536710424491 13321 chr16 457027 457027 1 + T C rs113274541 457019 + 456999 457039 41 TATTGGGTTCTGGGAGGGACCTTCCTGTTTGGGGGTAATGT TATTGGGTTCTGGGAGGGACCTTCCTGTCTGGGGGTAATGT < 41bp 1 0.0214210769404734 1 0.0376558899879456 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DECR2 ENSG00000103202;ENSG00000242612 intronic Human other chr16:457019 chr16:457027 . . 0 29 hm5C_associated_SNPs_11113 0 0 1 0 1 Cytosol 1 0.500231643921115 1 0.999536712157771 hm5C_site_13321 DeepMRMD:1;iRNA_m5C:0.999536712157771 13322 chr16 460299 460299 1 + A T rs542989271 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGTCCGTGATGGACATCGATACCAGCGGCACCTTCAA < 41bp 1 0.471528651241555 1 0.434303343296051 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460299 nonsynonymous SNV 0.991 2 7 hm5C_associated_SNPs_11114 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13322 DeepMRMD:1;iRNA_m5C:0.999536712157815 13323 chr16 460321 460321 1 + G A rs77446963 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGACCGTGATGGACATCGATACCAACGGCACCTTCAA < 41bp 1 0.524449327845475 1 0.468924969434738 experiment 0.951101344309051 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460321 nonsynonymous SNV 0.002 0 29 hm5C_associated_SNPs_11115 0 0 1 2 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_13323 DeepMRMD:1;iRNA_m5C:0.999536712157815 13324 chr16 462280 462280 1 + G A rs76469232 462271 + 462251 462291 41 TGAAAACACTGAGGTGCTCCCATCTGTGCGTGGCCCATGAG TGAAAACACTGAGGTGCTCCCATCTGTGCATGGCCCATGAG < 41bp 1 0.399508899643502 1 0.222327083349228 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DECR2 ENSG00000242612 UTR3 Human protein_coding chr16:462271 chr16:462280 . . 0 30 hm5C_associated_SNPs_11116 0 0 1 0 0 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_13324 DeepMRMD:1;iRNA_m5C:0.999536712157808 13325 chr16 462285 462285 1 + C T rs142570754 462271 + 462251 462291 41 TGAAAACACTGAGGTGCTCCCATCTGTGCGTGGCCCATGAG TGAAAACACTGAGGTGCTCCCATCTGTGCGTGGCTCATGAG < 41bp 1 0.40364368897247 1 0.219246238470078 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DECR2 ENSG00000242612 UTR3 Human protein_coding chr16:462271 chr16:462285 . . 0 35 hm5C_associated_SNPs_11117 0 0 1 0 0 Cytosol 1 0.500231798191935 1 0.99953640361613 hm5C_site_13325 DeepMRMD:1;iRNA_m5C:0.99953640361613 13326 chr16 560734 560734 1 + G A rs141366917 560728 + 560708 560748 41 CGAGATGGTCCTGGAAGAGACCCGGCGTCAGAAGGAGCTCC CGAGATGGTCCTGGAAGAGACCCGGCATCAGAAGGAGCTCC < 41bp 1 0.350299027953151 1 0.0981593132019043 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:560728 chr16:560734 nonsynonymous SNV 0.022 2 27 hm5C_associated_SNPs_11118 0 0 1 0 2 Ribosome 1 0.500231643841313 1 0.999536712317375 hm5C_site_13326 DeepMRMD:1;iRNA_m5C:0.999536712317375 13327 chr16 560734 560734 1 + G A rs141366917 560733 + 560713 560753 41 TGGTCCTGGAAGAGACCCGGCGTCAGAAGGAGCTCCTGTGC TGGTCCTGGAAGAGACCCGGCATCAGAAGGAGCTCCTGTGC < 41bp 1 0.282650027238687 1 0.046173483133316 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:560733 chr16:560734 nonsynonymous SNV 0.022 2 22 hm5C_associated_SNPs_11119 0 0 1 0 2 Ribosome 1 0.500231643921036 1 0.999536712157927 hm5C_site_13327 DeepMRMD:1;iRNA_m5C:0.999536712157927 13328 chr16 560734 560734 1 + G A rs141366917 560748 + 560728 560768 41 CCCGGCGTCAGAAGGAGCTCCTGTGCAAGATGGAGAGGGAG CCCGGCATCAGAAGGAGCTCCTGTGCAAGATGGAGAGGGAG < 41bp 1 0.150794746586752 1 0.556317746639252 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:560748 chr16:560734 nonsynonymous SNV 0.022 2 7 hm5C_associated_SNPs_11120 0 0 1 0 2 Ribosome 1 0.500232329553443 0.887364506721496 0.999535340893114 hm5C_site_13328 DeepMRMD:0.887364506721496;iRNA_m5C:0.999535340893114 13329 chr16 597885 597885 1 + C T rs142840835 597866 + 597846 597886 41 CTCCAGCCCCGACTTCACCACCTGGTCATGTGCCAAGTGCA CTCCAGCCCCGACTTCACCACCTGGTCATGTGCCAAGTGTA < 41bp 1 0.0689227686524656 1 0.15132936835289 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:597866 chr16:597885 nonsynonymous SNV 0.143 0 40 hm5C_associated_SNPs_11121 0 0 0 0 0 chromatin 1 0.500231643921176 1 0.999536712157648 hm5C_site_13329 DeepMRMD:1;iRNA_m5C:0.999536712157648 13330 chr16 601533 601533 1 + G A rs141298471 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCCGAAACCCATGGGGCCGTTTCTCCTGGAACGGCAGC < 41bp 1 0.020693440298385 1 0.0475730001926422 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601533 synonymous SNV . 0 14 hm5C_associated_SNPs_11122 0 0 1 0 1 chromatin 1 0.50023164327121 1 0.999536713457581 hm5C_site_13330 DeepMRMD:1;iRNA_m5C:0.999536713457581 13331 chr16 601533 601533 1 + G A rs141298471 601547 + 601527 601567 41 AAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG AAACCCATGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG < 41bp 1 0.492619634217184 1 0.865805149078369 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601547 chr16:601533 synonymous SNV . 0 7 hm5C_associated_SNPs_11123 0 0 1 0 1 chromatin 1 0.500231643799841 0.268389701843262 0.999536712400318 hm5C_site_13331 DeepMRMD:0.268389701843262;iRNA_m5C:0.999536712400318 13332 chr16 601554 601554 1 + C G rs377258156 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAAGGGCAGC < 41bp 1 0.0248519707317337 1 0.0511763393878937 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601554 nonsynonymous SNV 0.981 3 35 hm5C_associated_SNPs_11124 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13332 DeepMRMD:1;iRNA_m5C:0.999536712157815 13333 chr16 601554 601554 1 + C G rs377258156 601547 + 601527 601567 41 AAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG AAACCCGTGGGGCCGTTTCTCCTGGAAGGGCAGCTGGTCCG < 41bp 1 0.489545926309877 1 0.864394009113312 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601547 chr16:601554 nonsynonymous SNV 0.981 3 28 hm5C_associated_SNPs_11125 0 0 1 0 1 chromatin 1 0.500231643921092 0.271211981773376 0.999536712157815 hm5C_site_13333 DeepMRMD:0.271211981773376;iRNA_m5C:0.999536712157815 13334 chr16 604138 604138 1 + G A rs56163833 604137 + 604117 604157 41 CATGACTGGGTGCAGGCGGGCGCCAGGCCCGCTGTGGGTGG CATGACTGGGTGCAGGCGGGCACCAGGCCCGCTGTGGGTGG < 41bp 1 0.697169658068903 1 0.553784370422363 experiment 0.605660683862194 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CAPN15 ENSG00000103326 UTR3 Human protein_coding chr16:604137 chr16:604138 . . 0 22 hm5C_associated_SNPs_11126 0 0 0 0 0 chromatin 1 0.500231643921092 0.892431259155274 0.999536712157816 hm5C_site_13334 DeepMRMD:0.892431259155274;iRNA_m5C:0.999536712157816 13335 chr16 632011 632011 1 + C T rs74872027 632031 + 632011 632051 41 CTCCCAAAATGCTGGGATTACAGGCGTGAGCCACCGTGCCT TTCCCAAAATGCTGGGATTACAGGCGTGAGCCACCGTGCCT < 41bp 1 0.548848259080683 1 0.617541790008545 experiment 0.902303481838634 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PIGQ ENSG00000007541 intronic Human protein_coding chr16:632031 chr16:632011 . . 0 1 hm5C_associated_SNPs_11127 0 0 1 0 0 Ribosome 1 0.500231643956598 0.76491641998291 0.999536712086805 hm5C_site_13335 DeepMRMD:0.76491641998291;iRNA_m5C:0.999536712086805 13336 chr16 632051 632051 1 + T C rs2018789 632031 + 632011 632051 41 CTCCCAAAATGCTGGGATTACAGGCGTGAGCCACCGTGCCT CTCCCAAAATGCTGGGATTACAGGCGTGAGCCACCGTGCCC < 41bp 1 0.59714126848091 1 0.649334788322449 experiment 0.80571746303818 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PIGQ ENSG00000007541 intronic Human protein_coding chr16:632031 chr16:632051 . . 0 41 hm5C_associated_SNPs_11128 0 0 1 0 0 Ribosome 1 0.500231607627996 0.701330423355102 0.999536784744008 hm5C_site_13336 DeepMRMD:0.701330423355102;iRNA_m5C:0.999536784744008 13337 chr16 632051 632051 1 + T C rs2018789 632035 + 632015 632055 41 CAAAATGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCT CAAAATGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCT < 41bp 1 0.290415499947671 1 0.423501759767532 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PIGQ ENSG00000007541 intronic Human protein_coding chr16:632035 chr16:632051 . . 0 37 hm5C_associated_SNPs_11129 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13337 DeepMRMD:1;iRNA_m5C:0.999536712157815 13338 chr16 632051 632051 1 + T C rs2018789 632041 + 632021 632061 41 GCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCTGCAGGA GCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCTGCAGGA < 41bp 1 0.121178333341402 1 0.172724962234497 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PIGQ ENSG00000007541 intronic Human protein_coding chr16:632041 chr16:632051 . . 0 31 hm5C_associated_SNPs_11130 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13338 DeepMRMD:1;iRNA_m5C:0.999536712157815 13339 chr16 633722 633722 1 + C T rs563798371 633706 + 633686 633726 41 CAGCCTCAGTGTCAAGGGCCCGCCCACTGACCCAGCCGTAC CAGCCTCAGTGTCAAGGGCCCGCCCACTGACCCAGCTGTAC < 41bp 1 0.30319393198637 1 0.0469253063201904 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGQ ENSG00000007541 UTR3 Human protein_coding chr16:633706 chr16:633722 . . 0 37 hm5C_associated_SNPs_11131 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13339 DeepMRMD:1;iRNA_m5C:0.999536712157815 13340 chr16 675985 675985 1 + G A rs149195145 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCATACGCAGAG < 41bp 1 0.551877190187569 1 0.710542023181915 experiment 0.896245619624861 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675985 synonymous SNV . 0 32 hm5C_associated_SNPs_11132 0 0 1 0 2 Ribosome 1 0.500231643672059 0.57891595363617 0.999536712655883 hm5C_site_13340 DeepMRMD:0.57891595363617;iRNA_m5C:0.999536712655883 13341 chr16 691917 691917 1 + A C rs139969449 691910 + 691890 691930 41 GGCCCGCCCCCTCCCCGCGGCGCCCGCAGTCCGTTAAGTGC GGCCCGCCCCCTCCCCGCGGCGCCCGCCGTCCGTTAAGTGC < 41bp 1 0.280682427463215 1 0.105451613664627 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCRIP2 ENSG00000172366 UTR5 Human protein_coding chr16:691910 chr16:691917 . . 0 28 hm5C_associated_SNPs_11133 0 0 1 0 0 Cytosol 1 0.500231643921238 1 0.999536712157524 hm5C_site_13341 DeepMRMD:1;iRNA_m5C:0.999536712157524 13342 chr16 691917 691917 1 + A C rs139969449 691913 + 691893 691933 41 CCGCCCCCTCCCCGCGGCGCCCGCAGTCCGTTAAGTGCGAG CCGCCCCCTCCCCGCGGCGCCCGCCGTCCGTTAAGTGCGAG < 41bp 1 0.209575853564815 1 0.34798538684845 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCRIP2 ENSG00000172366 UTR5 Human protein_coding chr16:691913 chr16:691917 . . 0 25 hm5C_associated_SNPs_11134 0 0 1 0 0 Cytosol 1 0.500231643922071 1 0.999536712155858 hm5C_site_13342 DeepMRMD:1;iRNA_m5C:0.999536712155858 13343 chr16 691917 691917 1 + A C rs139969449 691935 + 691915 691955 41 GCAGTCCGTTAAGTGCGAGCCCCGGCGCAGGGGCCGGATCT GCCGTCCGTTAAGTGCGAGCCCCGGCGCAGGGGCCGGATCT < 41bp 1 0.588891314736483 1 0.255284130573273 experiment 0.822217370527035 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 UTR5 Human protein_coding chr16:691935 chr16:691917 . . 0 3 hm5C_associated_SNPs_11135 0 0 1 0 0 Cytosol 1 0.50023164414418 1 0.999536711711639 hm5C_site_13343 DeepMRMD:1;iRNA_m5C:0.999536711711639 13344 chr16 697823 697823 1 + C T rs374043940 697817 + 697797 697837 41 CAACAGCAGCTGGATGGTGGCCCAGCCGGTGAGGGCGGGCC CAACAGCAGCTGGATGGTGGCCCAGCTGGTGAGGGCGGGCC < 41bp 1 0.253513259548715 1 0.169194400310516 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697817 chr16:697823 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_11136 0 0 1 0 1 Cytosol 1 0.500231643922355 1 0.99953671215529 hm5C_site_13344 DeepMRMD:1;iRNA_m5C:0.99953671215529 13345 chr16 697823 697823 1 + C T rs374043940 697818 + 697798 697838 41 AACAGCAGCTGGATGGTGGCCCAGCCGGTGAGGGCGGGCCA AACAGCAGCTGGATGGTGGCCCAGCTGGTGAGGGCGGGCCA < 41bp 1 0.249184556719358 1 0.328366458415985 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697818 chr16:697823 nonsynonymous SNV . 0 26 hm5C_associated_SNPs_11137 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13345 DeepMRMD:1;iRNA_m5C:0.999536712157815 13346 chr16 697823 697823 1 + C T rs374043940 697819 + 697799 697839 41 ACAGCAGCTGGATGGTGGCCCAGCCGGTGAGGGCGGGCCAA ACAGCAGCTGGATGGTGGCCCAGCTGGTGAGGGCGGGCCAA < 41bp 1 0.569718875395801 1 0.492022305727005 experiment 0.860562249208398 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697819 chr16:697823 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_11138 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_13346 DeepMRMD:1;iRNA_m5C:0.999536712157815 13347 chr16 697823 697823 1 + C T rs374043940 697836 + 697816 697856 41 GCCCAGCCGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGTG GCCCAGCTGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGTG < 41bp 1 0.192365640496114 1 0.35424280166626 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697836 chr16:697823 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_11139 0 0 1 0 1 Cytosol 1 0.500231643914023 1 0.999536712171955 hm5C_site_13347 DeepMRMD:1;iRNA_m5C:0.999536712171955 13348 chr16 697823 697823 1 + C T rs374043940 697837 + 697817 697857 41 CCCAGCCGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGTGG CCCAGCTGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGTGG < 41bp 1 0.655645318898271 1 0.603377401828766 experiment 0.688709362203457 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697837 chr16:697823 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_11140 0 0 1 0 1 Cytosol 1 0.500231643921092 0.793245196342468 0.999536712157815 hm5C_site_13348 DeepMRMD:0.793245196342468;iRNA_m5C:0.999536712157815 13349 chr16 700614 700614 1 + A T rs184261872 700606 + 700586 700626 41 CTCGATCTGCAGGACGTTCTCCTGGTCTACCTGAACCGGTG CTCGATCTGCAGGACGTTCTCCTGGTCTTCCTGAACCGGTG < 41bp 1 0.499759722213513 1 0.764961719512939 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:700606 chr16:700614 nonsynonymous SNV 0.160 0 29 hm5C_associated_SNPs_11142 0 0 0 0 2 Cytosol 1 0.500231643921092 0.470076560974122 0.999536712157815 hm5C_site_13349 DeepMRMD:0.470076560974122;iRNA_m5C:0.999536712157815 13350 chr16 705360 705360 1 + T A rs3803697 705347 + 705327 705367 41 GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGAGCTGCGT < 41bp 1 0.442539917395817 1 0.410232573747635 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:705347 chr16:705360 nonsynonymous SNV 0.000 0 34 hm5C_associated_SNPs_11143 0 0 1 0 1 Cytosol 1 0.500230424654953 1 0.999539150690093 hm5C_site_13350 DeepMRMD:1;iRNA_m5C:0.999539150690093 13351 chr16 705361 705361 1 + G A rs181867252 705347 + 705327 705367 41 GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTACTGCGT < 41bp 1 0.451034459905451 1 0.463468164205551 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:705347 chr16:705361 synonymous SNV . 0 35 hm5C_associated_SNPs_11144 0 0 1 0 1 Cytosol 1 0.50023158445089 1 0.99953683109822 hm5C_site_13351 DeepMRMD:1;iRNA_m5C:0.99953683109822 13352 chr16 712775 712775 1 + G A rs181214791 712768 + 712748 712788 41 GGACATGGGCGTCGTGGGCACCACGGCGGGCACGCTGTGGT GGACATGGGCGTCGTGGGCACCACGGCAGGCACGCTGTGGT < 41bp 1 0.195559240517016 1 0.190983980894089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712768 chr16:712775 synonymous SNV . 0 28 hm5C_associated_SNPs_11145 0 0 1 0 2 Cytosol 1 0.500231644184979 1 0.999536711630042 hm5C_site_13352 DeepMRMD:1;iRNA_m5C:0.999536711630042 13353 chr16 712780 712780 1 + C A rs576866547 712768 + 712748 712788 41 GGACATGGGCGTCGTGGGCACCACGGCGGGCACGCTGTGGT GGACATGGGCGTCGTGGGCACCACGGCGGGCAAGCTGTGGT < 41bp 1 0.191804393331218 1 0.199606359004974 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712768 chr16:712780 nonsynonymous SNV 0.001 3 33 hm5C_associated_SNPs_11146 0 0 1 0 1 Cytosol 1 0.500229041939783 1 0.999541916120434 hm5C_site_13353 DeepMRMD:1;iRNA_m5C:0.999541916120434 13354 chr16 713204 713204 1 + A G rs9929652 713185 + 713165 713205 41 TGGTGGTTCATGCCTGTGATCCCAGCACTCTGGGAGGCCAA TGGTGGTTCATGCCTGTGATCCCAGCACTCTGGGAGGCCGA < 41bp 1 0.0597151272097698 1 0.0262835323810577 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR90 ENSG00000161996 intronic Human protein_coding chr16:713185 chr16:713204 . . 0 40 hm5C_associated_SNPs_11147 0 0 0 1 0 Cytosol 1 0.500231643921934 1 0.999536712156131 hm5C_site_13354 DeepMRMD:1;iRNA_m5C:0.999536712156131 13355 chr16 713204 713204 1 + A G rs9929652 713186 + 713166 713206 41 GGTGGTTCATGCCTGTGATCCCAGCACTCTGGGAGGCCAAG GGTGGTTCATGCCTGTGATCCCAGCACTCTGGGAGGCCGAG < 41bp 1 0.0471141015308007 1 0.250612378120422 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control WDR90 ENSG00000161996 intronic Human protein_coding chr16:713186 chr16:713204 . . 0 39 hm5C_associated_SNPs_11148 0 0 0 1 0 Cytosol 1 0.500183334475236 1 0.999633331049527 hm5C_site_13355 DeepMRMD:1;iRNA_m5C:0.999633331049527 13356 chr16 713204 713204 1 + A G rs9929652 713187 + 713167 713207 41 GTGGTTCATGCCTGTGATCCCAGCACTCTGGGAGGCCAAGG GTGGTTCATGCCTGTGATCCCAGCACTCTGGGAGGCCGAGG < 41bp 1 0.410980364396783 1 0.280140578746796 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control WDR90 ENSG00000161996 intronic Human protein_coding chr16:713187 chr16:713204 . . 0 38 hm5C_associated_SNPs_11149 0 0 0 1 0 Cytosol 1 0.500232361247698 1 0.999535277504604 hm5C_site_13356 DeepMRMD:1;iRNA_m5C:0.999535277504604 13357 chr16 717566 717566 1 + G A rs201597639 717579 + 717559 717599 41 GATCCTTGTGTGGGAGGTCCCCGGCCTCTGAGATGCAGCAG GATCCTTATGTGGGAGGTCCCCGGCCTCTGAGATGCAGCAG < 41bp 1 0.478386409900246 1 0.681677043437958 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:717579 chr16:717566 nonsynonymous SNV 0.992 2 8 hm5C_associated_SNPs_11150 0 0 1 0 0 Cytosol 1 0.500231646992064 0.636645913124084 0.999536706015872 hm5C_site_13357 DeepMRMD:0.636645913124084;iRNA_m5C:0.999536706015872 13358 chr16 722942 722942 1 + C T rs79058341 722951 + 722931 722971 41 CATTACATGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC CATTACATGGATGGGCAGACCCCCTGCCTCTTTGTCTCCTC < 41bp 1 0.337943047533748 1 0.0842556059360504 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722951 chr16:722942 synonymous SNV . 0 12 hm5C_associated_SNPs_11151 0 0 1 0 1 Ribosome 1 0.500231643920921 1 0.999536712158158 hm5C_site_13358 DeepMRMD:1;iRNA_m5C:0.999536712158158 13359 chr16 722958 722958 1 + C G rs55977091 722951 + 722931 722971 41 CATTACATGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC CATTACATGGACGGGCAGACCCCCTGCGTCTTTGTCTCCTC < 41bp 1 0.393971270538546 1 0.174207389354706 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722951 chr16:722958 nonsynonymous SNV 0.952 1 28 hm5C_associated_SNPs_11152 0 0 1 0 1 Ribosome 1 0.500231643437698 1 0.999536713124603 hm5C_site_13359 DeepMRMD:1;iRNA_m5C:0.999536713124603 13360 chr16 722997 722997 1 + G A rs61745203 723004 + 722984 723024 41 GCCCGAAGGTGTCGCGGTGTCTGGCCCATCACCGGCCGAGT GCCCGAAGGTGTCACGGTGTCTGGCCCATCACCGGCCGAGT < 41bp 1 0.667903551113069 1 0.367519199848175 experiment 0.664192897773862 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:723004 chr16:722997 nonsynonymous SNV 0.000 1 14 hm5C_associated_SNPs_11153 0 0 1 0 1 Ribosome 1 0.500231164706991 1 0.999537670586018 hm5C_site_13360 DeepMRMD:1;iRNA_m5C:0.999537670586018 13361 chr16 723017 723017 1 + G A rs201357594 723004 + 722984 723024 41 GCCCGAAGGTGTCGCGGTGTCTGGCCCATCACCGGCCGAGT GCCCGAAGGTGTCGCGGTGTCTGGCCCATCACCAGCCGAGT < 41bp 1 0.690436601188116 1 0.544352829456329 experiment 0.619126797623768 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:723004 chr16:723017 synonymous SNV . 0 34 hm5C_associated_SNPs_11154 0 0 0 0 1 Ribosome 1 0.500232900541507 0.911294341087342 0.999534198916986 hm5C_site_13361 DeepMRMD:0.911294341087342;iRNA_m5C:0.999534198916986 13362 chr16 732545 732545 1 + G A rs199785249 732542 + 732522 732562 41 GGGAGCCCTGGGCAGAAGCCCCCGGCCCCTATACATAGTTT GGGAGCCCTGGGCAGAAGCCCCCAGCCCCTATACATAGTTT < 41bp 1 0.245533842163046 1 0.395357072353363 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control JMJD8;STUB1 ENSG00000103266;ENSG00000161999 UTR3 Human other chr16:732542 chr16:732545 . . 0 24 hm5C_associated_SNPs_11156 0 0 1 0 0 unknown 1 0.500231643921064 1 0.999536712157873 hm5C_site_13362 DeepMRMD:1;iRNA_m5C:0.999536712157873 13363 chr16 765861 765861 1 + G A rs192156658 765862 + 765842 765882 41 GGGTCCCCGCGAGCGCCGGGCCCTCTTCCTGCAGGCCACGC GGGTCCCCGCGAGCGCCGGACCCTCTTCCTGCAGGCCACGC < 41bp 1 0.106597496732684 1 0.0218417346477509 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient METRN ENSG00000103260 CDS Human protein_coding chr16:765862 chr16:765861 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_11157 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_13363 DeepMRMD:1;iRNA_m5C:0.999536712157815 13364 chr16 765861 765861 1 + G A rs192156658 765863 + 765843 765883 41 GGTCCCCGCGAGCGCCGGGCCCTCTTCCTGCAGGCCACGCC GGTCCCCGCGAGCGCCGGACCCTCTTCCTGCAGGCCACGCC < 41bp 1 0.144573448078811 1 0.0300341546535492 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control METRN ENSG00000103260 CDS Human protein_coding chr16:765863 chr16:765861 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_11158 0 0 1 0 0 Cytosol 1 0.500231644375866 1 0.999536711248268 hm5C_site_13364 DeepMRMD:1;iRNA_m5C:0.999536711248268 13365 chr16 765861 765861 1 + G A rs192156658 765864 + 765844 765884 41 GTCCCCGCGAGCGCCGGGCCCTCTTCCTGCAGGCCACGCCG GTCCCCGCGAGCGCCGGACCCTCTTCCTGCAGGCCACGCCG < 41bp 1 0.354306255426604 1 0.0296259522438049 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METRN ENSG00000103260 CDS Human protein_coding chr16:765864 chr16:765861 nonsynonymous SNV 0.998 0 18 hm5C_associated_SNPs_11159 0 0 1 0 0 Cytosol 1 0.50023164392107 1 0.999536712157861 hm5C_site_13365 DeepMRMD:1;iRNA_m5C:0.999536712157861 13366 chr16 768566 768566 1 + T C rs115369124 768578 + 768558 768598 41 ATGCCTGATGAGTGCCATGCCCTCTGTGGACACCTGGGGAG ATGCCTGACGAGTGCCATGCCCTCTGTGGACACCTGGGGAG < 41bp 1 0.175189097896708 1 0.234024047851562 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METRN ENSG00000103260 UTR3 Human protein_coding chr16:768578 chr16:768566 . . 0 9 hm5C_associated_SNPs_11160 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13366 DeepMRMD:1;iRNA_m5C:0.999536712157815 13367 chr16 768596 768596 1 + G T rs11248945 768578 + 768558 768598 41 ATGCCTGATGAGTGCCATGCCCTCTGTGGACACCTGGGGAG ATGCCTGATGAGTGCCATGCCCTCTGTGGACACCTGGGTAG < 41bp 1 0.185105958036614 1 0.0594460070133209 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METRN ENSG00000103260 UTR3 Human protein_coding chr16:768578 chr16:768596 . . 0 39 hm5C_associated_SNPs_11161 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_13367 DeepMRMD:1;iRNA_m5C:0.999536712157817 13368 chr16 768597 768597 1 + A G rs11248946 768578 + 768558 768598 41 ATGCCTGATGAGTGCCATGCCCTCTGTGGACACCTGGGGAG ATGCCTGATGAGTGCCATGCCCTCTGTGGACACCTGGGGGG < 41bp 1 0.165092961841646 1 0.109967827796936 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METRN ENSG00000103260 UTR3 Human protein_coding chr16:768578 chr16:768597 . . 0 40 hm5C_associated_SNPs_11162 0 0 0 0 0 Cytosol 1 0.500231643922641 1 0.999536712154718 hm5C_site_13368 DeepMRMD:1;iRNA_m5C:0.999536712154718 13369 chr16 816654 816654 1 + G A rs552757404 816657 + 816637 816677 41 CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCC CCACAAGGCTCCTCGGCAGCCCCTCCCACAGGTGGCCACCC < 41bp 1 0.0243442225751865 1 0.193900436162949 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816657 chr16:816654 nonsynonymous SNV 0.161 0 18 hm5C_associated_SNPs_11164 0 0 0 0 1 nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_13369 DeepMRMD:1;iRNA_m5C:0.999536712157814 13370 chr16 816654 816654 1 + G A rs552757404 816658 + 816638 816678 41 CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCCT CACAAGGCTCCTCGGCAGCCCCTCCCACAGGTGGCCACCCT < 41bp 1 0.0136734532980053 1 0.0449402034282684 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816658 chr16:816654 nonsynonymous SNV 0.161 0 17 hm5C_associated_SNPs_11165 0 0 0 0 1 nucleus 1 0.500231643925278 1 0.999536712149444 hm5C_site_13370 DeepMRMD:1;iRNA_m5C:0.999536712149444 13371 chr16 842508 842508 1 + G T rs34595992 842525 + 842505 842545 41 CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA CCGTCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA < 41bp 1 0.527187012120085 1 0.717051863670349 experiment 0.94562597575983 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842525 chr16:842508 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_11166 0 0 1 0 2 Nucleus 1 0.500231540631171 0.565896272659302 0.999536918737659 hm5C_site_13371 DeepMRMD:0.565896272659302;iRNA_m5C:0.999536918737659 13372 chr16 842518 842518 1 + C T rs35387463 842525 + 842505 842545 41 CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA CCGGCTGTGCCTTTGGGAGGCGGCCGACGGCGCCGGGCAGA < 41bp 1 0.514369507841749 1 0.731044709682465 experiment 0.971260984316502 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842525 chr16:842518 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_11167 0 0 1 0 2 Nucleus 1 0.500231643921092 0.53791058063507 0.999536712157815 hm5C_site_13372 DeepMRMD:0.53791058063507;iRNA_m5C:0.999536712157815 13373 chr16 845153 845153 1 + C A rs540750304 845172 + 845152 845192 41 GCGTCTGCGGCTGCGAGACTCCAGCCTGGGTGCTGTGTGTG GAGTCTGCGGCTGCGAGACTCCAGCCTGGGTGCTGTGTGTG < 41bp 1 0.259966290043537 1 0.240950882434845 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845172 chr16:845153 nonsynonymous SNV 0.728 0 2 hm5C_associated_SNPs_11168 0 0 1 0 1 Nucleus 1 0.50023165052214 1 0.99953669895572 hm5C_site_13373 DeepMRMD:1;iRNA_m5C:0.99953669895572 13374 chr16 845154 845154 1 + G A rs565850771 845172 + 845152 845192 41 GCGTCTGCGGCTGCGAGACTCCAGCCTGGGTGCTGTGTGTG GCATCTGCGGCTGCGAGACTCCAGCCTGGGTGCTGTGTGTG < 41bp 1 0.295869733356846 1 0.275470823049545 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845172 chr16:845154 nonsynonymous SNV 0.583 0 3 hm5C_associated_SNPs_11169 0 0 1 0 1 Nucleus 1 0.500232625988792 1 0.999534748022415 hm5C_site_13374 DeepMRMD:1;iRNA_m5C:0.999534748022415 13375 chr16 845761 845761 1 + G A rs200036540 845778 + 845758 845798 41 GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC GCCAGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC < 41bp 1 0.40087689223515 1 0.0556770861148834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845778 chr16:845761 nonsynonymous SNV 0.182 0 4 hm5C_associated_SNPs_11170 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_13375 DeepMRMD:1;iRNA_m5C:0.999536712157815 13376 chr16 845797 845797 1 + G A rs61741082 845778 + 845758 845798 41 GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTAC < 41bp 1 0.425523156910497 1 0.0544635355472565 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845778 chr16:845797 nonsynonymous SNV 0.095 1 40 hm5C_associated_SNPs_11171 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_13376 DeepMRMD:1;iRNA_m5C:0.999536712157815 13377 chr16 845819 845819 1 + A G rs2294446 845820 + 845800 845840 41 TGCTCCTGGACATTCTTGCACCCAAGCTCCGCCCCGTGAGT TGCTCCTGGACATTCTTGCGCCCAAGCTCCGCCCCGTGAGT < 41bp 1 0.226427159857023 1 0.0804927945137024 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845820 chr16:845819 synonymous SNV . 0 20 hm5C_associated_SNPs_11172 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_13377 DeepMRMD:1;iRNA_m5C:0.999536712157814 13378 chr16 845832 845832 1 + C A rs577654496 845820 + 845800 845840 41 TGCTCCTGGACATTCTTGCACCCAAGCTCCGCCCCGTGAGT TGCTCCTGGACATTCTTGCACCCAAGCTCCGCACCGTGAGT < 41bp 1 0.237198346239905 1 0.0874706506729126 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845820 chr16:845832 nonsynonymous SNV 0.373 4 33 hm5C_associated_SNPs_11173 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_13378 DeepMRMD:1;iRNA_m5C:0.999536712157812 13379 chr16 1031964 1031964 1 + C T rs201357577 1031957 + 1031937 1031977 41 CGAGGCCCGCTCCCAGCCGCCCTGCAGCCCGTCCGGCACCG CGAGGCCCGCTCCCAGCCGCCCTGCAGTCCGTCCGGCACCG < 41bp 1 0.175908421560335 1 0.17275196313858 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SOX8 ENSG00000005513 CDS Human protein_coding chr16:1031957 chr16:1031964 synonymous SNV . 0 28 hm5C_associated_SNPs_11174 0 0 0 0 0 exosome 1 0.500231643921146 1 0.999536712157707 hm5C_site_13379 DeepMRMD:1;iRNA_m5C:0.999536712157707 13380 chr16 1364007 1364007 1 + C G rs200918704 1364009 + 1363989 1364029 41 CCTGACCCCGTGCTCTGCCTCCTGTGTTCCAGGGACTTTGA CCTGACCCCGTGCTCTGCGTCCTGTGTTCCAGGGACTTTGA < 41bp 1 0.0852531595490716 1 0.0440954864025116 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE2I ENSG00000103275 UTR5 Human protein_coding chr16:1364009 chr16:1364007 . . 0 19 hm5C_associated_SNPs_11175 0 0 1 0 1 Ribosome 1 0.500231388097498 1 0.999537223805004 hm5C_site_13380 DeepMRMD:1;iRNA_m5C:0.999537223805004 13381 chr16 1395257 1395257 1 + C A rs145807489 1395256 + 1395236 1395276 41 CCCTCCCACCACAGGGACAGCCGCTCTCTGGCCCTGGCTGG CCCTCCCACCACAGGGACAGCAGCTCTCTGGCCCTGGCTGG < 41bp 1 0.368723759974217 1 0.391130745410919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1395256 chr16:1395257 nonsynonymous SNV 0.939 1 22 hm5C_associated_SNPs_11176 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13381 DeepMRMD:1;iRNA_m5C:0.999536712157815 13382 chr16 1397810 1397810 1 + C A rs574931188 1397801 + 1397781 1397821 41 AGGTGCTGCACGCCGCGGACCTGCTCCCCCTGGACGCCAAC AGGTGCTGCACGCCGCGGACCTGCTCCCCATGGACGCCAAC < 41bp 1 0.289743319968018 1 0.0397980511188507 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1397801 chr16:1397810 nonsynonymous SNV 0.103 4 30 hm5C_associated_SNPs_11177 0 0 0 0 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_13382 DeepMRMD:1;iRNA_m5C:0.999536712157818 13383 chr16 1397815 1397815 1 + C T rs1132358 1397801 + 1397781 1397821 41 AGGTGCTGCACGCCGCGGACCTGCTCCCCCTGGACGCCAAC AGGTGCTGCACGCCGCGGACCTGCTCCCCCTGGATGCCAAC < 41bp 1 0.288722532287094 1 0.0853068232536316 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1397801 chr16:1397815 synonymous SNV . 0 35 hm5C_associated_SNPs_11178 0 0 0 0 1 chromatin 1 0.500231643924483 1 0.999536712151034 hm5C_site_13383 DeepMRMD:1;iRNA_m5C:0.999536712151034 13384 chr16 1545448 1545448 1 + A G rs2235624 1545447 + 1545427 1545467 41 CGCAGTGTCGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC CGCAGTGTCGGCAGCAGACGCGGCCCGGCTTCATCCTGCTC < 41bp 1 0.513392958712452 1 0.124905496835709 experiment 0.973214082575096 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545447 chr16:1545448 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_11180 0 0 0 0 0 Cytosol 1 0.500231643661386 1 0.999536712677229 hm5C_site_13384 DeepMRMD:1;iRNA_m5C:0.999536712677229 13385 chr16 1545454 1545454 1 + G T rs557890967 1545447 + 1545427 1545467 41 CGCAGTGTCGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC CGCAGTGTCGGCAGCAGACGCAGCCCGTCTTCATCCTGCTC < 41bp 1 0.428339454314946 1 0.203439712524414 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545447 chr16:1545454 nonsynonymous SNV 0.014 1 28 hm5C_associated_SNPs_11181 0 0 1 0 0 Cytosol 1 0.500231643990701 1 0.999536712018598 hm5C_site_13385 DeepMRMD:1;iRNA_m5C:0.999536712018598 13386 chr16 1545455 1545455 1 + C T rs577762506 1545447 + 1545427 1545467 41 CGCAGTGTCGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC CGCAGTGTCGGCAGCAGACGCAGCCCGGTTTCATCCTGCTC < 41bp 1 0.454700201174433 1 0.369279861450195 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545447 chr16:1545455 synonymous SNV . 0 29 hm5C_associated_SNPs_11182 0 0 0 0 0 Cytosol 1 0.500231643921842 1 0.999536712156315 hm5C_site_13386 DeepMRMD:1;iRNA_m5C:0.999536712156315 13387 chr16 1545467 1545467 1 + C T rs138680627 1545447 + 1545427 1545467 41 CGCAGTGTCGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC CGCAGTGTCGGCAGCAGACGCAGCCCGGCTTCATCCTGCTT < 41bp 1 0.406717876367556 1 0.133038520812988 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545447 chr16:1545467 synonymous SNV . 0 41 hm5C_associated_SNPs_11183 0 0 1 0 0 Cytosol 1 0.500231743746382 1 0.999536512507236 hm5C_site_13387 DeepMRMD:1;iRNA_m5C:0.999536512507236 13388 chr16 1556286 1556286 1 + C A rs141481758 1556292 + 1556272 1556312 41 AGCAGATTCAACTCCGTGGCCGGCCACTTCTTCTTCCCCCT AGCAGATTCAACTCAGTGGCCGGCCACTTCTTCTTCCCCCT < 41bp 1 0.312693266064828 1 0.373676866292953 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1556292 chr16:1556286 nonsynonymous SNV . 0 15 hm5C_associated_SNPs_11184 0 0 1 0 1 Cytosol 1 0.500231643734289 1 0.999536712531422 hm5C_site_13388 DeepMRMD:1;iRNA_m5C:0.999536712531422 13389 chr16 1724118 1724118 1 + G T rs144007507 1724110 + 1724090 1724130 41 AAAATAGATAAGCCCAGCAGCCCCAGAAGATGGTCTGAACA AAAATAGATAAGCCCAGCAGCCCCAGAATATGGTCTGAACA < 41bp 1 0.17152979352032 1 0.0813573598861694 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRAMP1 ENSG00000007545;ENSG00000261732 UTR3 Human other chr16:1724110 chr16:1724118 . . 0 29 hm5C_associated_SNPs_11185 0 0 0 0 0 chromatin 1 0.500231643809182 1 0.999536712381636 hm5C_site_13389 DeepMRMD:1;iRNA_m5C:0.999536712381636 13390 chr16 1727152 1727152 1 + C G rs11864354 1727165 + 1727145 1727185 41 AAGAAAACAAGGAAGGAGGCCGGGCGCAGTGGCTCACGCCT AAGAAAAGAAGGAAGGAGGCCGGGCGCAGTGGCTCACGCCT < 41bp 1 0.653984050812815 1 0.735699772834778 experiment 0.692031898374369 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRAMP1 ENSG00000007545 UTR3 Human protein_coding chr16:1727165 chr16:1727152 . . 0 8 hm5C_associated_SNPs_11186 0 0 1 0 0 chromatin 1 0.500231643142681 0.528600454330444 0.999536713714638 hm5C_site_13390 DeepMRMD:0.528600454330444;iRNA_m5C:0.999536713714638 13391 chr16 1727171 1727171 1 + C A rs139933139 1727165 + 1727145 1727185 41 AAGAAAACAAGGAAGGAGGCCGGGCGCAGTGGCTCACGCCT AAGAAAACAAGGAAGGAGGCCGGGCGAAGTGGCTCACGCCT < 41bp 1 0.631048069704588 1 0.702541172504425 experiment 0.737903860590823 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRAMP1 ENSG00000007545 UTR3 Human protein_coding chr16:1727165 chr16:1727171 . . 0 27 hm5C_associated_SNPs_11187 0 0 0 0 0 chromatin 1 0.500231643922124 0.59491765499115 0.999536712155752 hm5C_site_13391 DeepMRMD:0.59491765499115;iRNA_m5C:0.999536712155752 13392 chr16 1756349 1756349 1 + G A rs139282045 1756352 + 1756332 1756372 41 GTGGCCGCGATGATGGAGATCCAGATGGACGAGGGCGGCGG GTGGCCGCGATGATGGAAATCCAGATGGACGAGGGCGGCGG < 41bp 1 0.644293344967128 1 0.39948558807373 experiment 0.711413310065744 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1756352 chr16:1756349 synonymous SNV . 0 18 hm5C_associated_SNPs_11188 0 0 1 0 0 chromatin 1 0.500231643921124 1 0.999536712157752 hm5C_site_13392 DeepMRMD:1;iRNA_m5C:0.999536712157752 13393 chr16 1817166 1817166 1 + G A rs559241066 1817164 + 1817144 1817184 41 CTCCAGATGGCCAGTGGGATCTGAGCAACTATCACCTAATG CTCCAGATGGCCAGTGGGATCTAAGCAACTATCACCTAATG < 41bp 1 0.369936030216388 1 0.286356925964355 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1817164 chr16:1817166 synonymous SNV . 0 23 hm5C_associated_SNPs_11189 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13393 DeepMRMD:1;iRNA_m5C:0.999536712157815 13394 chr16 1819433 1819433 1 + G A rs2575329 1819426 + 1819406 1819446 41 CCACCCCAGCTGTCCCCTGCCCAGGGAGCTGGCATAAAAGC CCACCCCAGCTGTCCCCTGCCCAGGGAACTGGCATAAAAGC < 41bp 1 0.348690101062133 1 0.88129198551178 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP3 ENSG00000138834 UTR3 Human protein_coding chr16:1819426 chr16:1819433 . . 0 28 hm5C_associated_SNPs_11190 0 0 1 0 0 chromatin 1 0.500231643921308 0.23741602897644 0.999536712157384 hm5C_site_13394 DeepMRMD:0.23741602897644;iRNA_m5C:0.999536712157384 13395 chr16 1819449 1819449 1 + G A rs189223100 1819461 + 1819441 1819481 41 AAAAGCACGAGGCCCGGCTCCCTGGGGCAGCTGCTTGAGAA AAAAGCACAAGGCCCGGCTCCCTGGGGCAGCTGCTTGAGAA < 41bp 1 0.188627304842738 1 0.290766417980194 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP3 ENSG00000138834 UTR3 Human protein_coding chr16:1819461 chr16:1819449 . . 0 9 hm5C_associated_SNPs_11191 0 0 0 0 0 chromatin 1 0.500231643921082 1 0.999536712157836 hm5C_site_13395 DeepMRMD:1;iRNA_m5C:0.999536712157836 13396 chr16 1889362 1889362 1 + G T rs376572512 1889342 + 1889322 1889362 41 ATCAGTCAGATCAATCAGCACATGGAAACTGAGAAAGACAG ATCAGTCAGATCAATCAGCACATGGAAACTGAGAAAGACAT < 41bp 1 0.476002018680569 1 0.105341672897339 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human protein_coding chr16:1889342 chr16:1889362 nonsynonymous SNV 0.797 3 41 hm5C_associated_SNPs_11196 0 0 0 0 1 chromatin 1 0.500231814825545 1 0.99953637034891 hm5C_site_13396 DeepMRMD:1;iRNA_m5C:0.99953637034891 13397 chr16 2011675 2011675 1 + C T rs201026820 2011691 + 2011671 2011711 41 TCCTCCTGAGGCCTGGGGGCCAGAACCATTGCAAATCTTCC TCCTTCTGAGGCCTGGGGGCCAGAACCATTGCAAATCTTCC < 41bp 1 0.554537193570269 1 0.530394375324249 experiment 0.890925612859462 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011691 chr16:2011675 synonymous SNV . 0 5 hm5C_associated_SNPs_11198 0 0 1 0 0 Ribosome 1 0.500231643921092 0.939211249351502 0.999536712157815 hm5C_site_13397 DeepMRMD:0.939211249351502;iRNA_m5C:0.999536712157815 13398 chr16 2011685 2011685 1 + G A rs199907517 2011691 + 2011671 2011711 41 TCCTCCTGAGGCCTGGGGGCCAGAACCATTGCAAATCTTCC TCCTCCTGAGGCCTAGGGGCCAGAACCATTGCAAATCTTCC < 41bp 1 0.57992812465098 1 0.532040894031525 experiment 0.84014375069804 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011691 chr16:2011685 nonsynonymous SNV 0.003 1 15 hm5C_associated_SNPs_11199 0 0 1 0 0 Ribosome 1 0.500231643915333 0.93591821193695 0.999536712169334 hm5C_site_13398 DeepMRMD:0.93591821193695;iRNA_m5C:0.999536712169334 13399 chr16 2011696 2011696 1 + C T rs145006994 2011691 + 2011671 2011711 41 TCCTCCTGAGGCCTGGGGGCCAGAACCATTGCAAATCTTCC TCCTCCTGAGGCCTGGGGGCCAGAATCATTGCAAATCTTCC < 41bp 1 0.646466835618886 1 0.548979640007019 experiment 0.707066328762229 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011691 chr16:2011696 synonymous SNV . 0 26 hm5C_associated_SNPs_11200 0 0 1 0 0 Ribosome 1 0.500231643921092 0.902040719985962 0.999536712157815 hm5C_site_13399 DeepMRMD:0.902040719985962;iRNA_m5C:0.999536712157815 13400 chr16 2011925 2011925 1 + C G rs74903026 2011924 + 2011904 2011944 41 CTGAGGCAGCTGTGGGTGCCCCTGCTGTGTGGCTCTGTATG CTGAGGCAGCTGTGGGTGCCCGTGCTGTGTGGCTCTGTATG < 41bp 1 0.499273737825381 1 0.278870314359665 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFB10 ENSG00000140990 UTR3 Human protein_coding chr16:2011924 chr16:2011925 . . 0 22 hm5C_associated_SNPs_11201 0 0 1 0 0 Ribosome 1 0.500231678028696 1 0.999536643942609 hm5C_site_13400 DeepMRMD:1;iRNA_m5C:0.999536643942609 13401 chr16 2015245 2015245 1 + C A rs17135730 2015236 + 2015216 2015256 41 TGGCCGCGGGTGAGATTCGGCGCCCAGAGCCCCCGGGGGCC TGGCCGCGGGTGAGATTCGGCGCCCAGAGACCCCGGGGGCC < 41bp 1 0.34135870787951 1 0.272253185510635 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015236 chr16:2015245 . . 0 30 hm5C_associated_SNPs_11203 0 0 1 3 0 unknown 1 0.500231630096061 1 0.999536739807878 hm5C_site_13401 DeepMRMD:1;iRNA_m5C:0.999536739807878 13402 chr16 2015245 2015245 1 + C A rs17135730 2015239 + 2015219 2015259 41 CCGCGGGTGAGATTCGGCGCCCAGAGCCCCCGGGGGCCTCA CCGCGGGTGAGATTCGGCGCCCAGAGACCCCGGGGGCCTCA < 41bp 1 0.548502951885231 1 0.153854429721832 experiment 0.902994096229538 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015239 chr16:2015245 . . 0 27 hm5C_associated_SNPs_11204 0 0 1 3 0 unknown 1 0.500231643921016 1 0.999536712157967 hm5C_site_13402 DeepMRMD:1;iRNA_m5C:0.999536712157967 13403 chr16 2015245 2015245 1 + C A rs17135730 2015247 + 2015227 2015267 41 GAGATTCGGCGCCCAGAGCCCCCGGGGGCCTCAGCTCACCG GAGATTCGGCGCCCAGAGACCCCGGGGGCCTCAGCTCACCG < 41bp 1 0.601801455637175 1 0.688582479953766 experiment 0.79639708872565 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015247 chr16:2015245 . . 0 19 hm5C_associated_SNPs_11205 0 0 1 3 0 unknown 1 0.500231643903867 0.622835040092468 0.999536712192266 hm5C_site_13403 DeepMRMD:0.622835040092468;iRNA_m5C:0.999536712192266 13404 chr16 2015245 2015245 1 + C A rs17135730 2015256 + 2015236 2015276 41 CGCCCAGAGCCCCCGGGGGCCTCAGCTCACCGCGCGCTGCC CGCCCAGAGACCCCGGGGGCCTCAGCTCACCGCGCGCTGCC < 41bp 1 0.339126836778779 1 0.0451457500457764 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015256 chr16:2015245 . . 0 10 hm5C_associated_SNPs_11206 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13404 DeepMRMD:1;iRNA_m5C:0.999536712157815 13405 chr16 2015256 2015256 1 + C T rs371847121 2015236 + 2015216 2015256 41 TGGCCGCGGGTGAGATTCGGCGCCCAGAGCCCCCGGGGGCC TGGCCGCGGGTGAGATTCGGCGCCCAGAGCCCCCGGGGGCT < 41bp 1 0.306774519110573 1 0.284157186746597 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015236 chr16:2015256 . . 0 41 hm5C_associated_SNPs_11207 0 0 1 0 0 unknown 1 0.500231643920103 1 0.999536712159793 hm5C_site_13405 DeepMRMD:1;iRNA_m5C:0.999536712159793 13406 chr16 2015256 2015256 1 + C T rs371847121 2015239 + 2015219 2015259 41 CCGCGGGTGAGATTCGGCGCCCAGAGCCCCCGGGGGCCTCA CCGCGGGTGAGATTCGGCGCCCAGAGCCCCCGGGGGCTTCA < 41bp 1 0.477927362183901 1 0.286708742380142 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015239 chr16:2015256 . . 0 38 hm5C_associated_SNPs_11208 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157817 hm5C_site_13406 DeepMRMD:1;iRNA_m5C:0.999536712157817 13407 chr16 2015256 2015256 1 + C T rs371847121 2015247 + 2015227 2015267 41 GAGATTCGGCGCCCAGAGCCCCCGGGGGCCTCAGCTCACCG GAGATTCGGCGCCCAGAGCCCCCGGGGGCTTCAGCTCACCG < 41bp 1 0.550686474585737 1 0.579084515571594 experiment 0.898627050828525 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015247 chr16:2015256 . . 0 30 hm5C_associated_SNPs_11209 0 0 1 0 0 unknown 1 0.500231643921092 0.841830968856812 0.999536712157815 hm5C_site_13407 DeepMRMD:0.841830968856812;iRNA_m5C:0.999536712157815 13408 chr16 2015256 2015256 1 + C T rs371847121 2015276 + 2015256 2015296 41 CTCAGCTCACCGCGCGCTGCCCCATGTGCGGCGGTGAAACC TTCAGCTCACCGCGCGCTGCCCCATGTGCGGCGGTGAAACC < 41bp 1 0.150697854760611 1 0.174708008766174 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA78 ENSG00000255198 ncRNA_exonic Human lincRNA chr16:2015276 chr16:2015256 . . 0 1 hm5C_associated_SNPs_11210 0 0 1 0 0 unknown 1 0.500231322136289 1 0.999537355727422 hm5C_site_13408 DeepMRMD:1;iRNA_m5C:0.999537355727422 13409 chr16 2034276 2034276 1 + G C rs535377905 2034282 + 2034262 2034302 41 CTCTTCTTCCTGCCGGGGGGCGCGCGCTCCGAGATGATGGA CTCTTCTTCCTGCCCGGGGGCGCGCGCTCCGAGATGATGGA < 41bp 1 0.36073418529683 1 0.328366041183472 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GFER ENSG00000127554 CDS Human protein_coding chr16:2034282 chr16:2034276 synonymous SNV . 0 15 hm5C_associated_SNPs_11211 1 0 1 0 0 Cytosol 1 0.50023164392113 1 0.99953671215774 hm5C_site_13409 DeepMRMD:1;iRNA_m5C:0.99953671215774 not specified not specified 13410 chr16 2069831 2069831 1 + T C rs572540140 2069830 + 2069810 2069850 41 CCGGTACCTGGGCGTCCCAACTCCACTGCGCGCCCAAACCC CCGGTACCTGGGCGTCCCAACCCCACTGCGCGCCCAAACCC < 41bp 1 0.636354780377717 1 0.236146688461304 experiment 0.727290439244566 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control NPW ENSG00000183971 UTR5 Human protein_coding chr16:2069830 chr16:2069831 . . 0 22 hm5C_associated_SNPs_11213 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_13410 DeepMRMD:1;iRNA_m5C:0.999536712157815 13411 chr16 2070149 2070149 1 + G A rs543718628 2070136 + 2070116 2070156 41 CCCCTGGCCAGGGACACCCTCTCCCCCGAACCCGCAGCCCG CCCCTGGCCAGGGACACCCTCTCCCCCGAACCCACAGCCCG < 41bp 1 0.387370763510977 1 0.813554704189301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPW ENSG00000183971 CDS Human protein_coding chr16:2070136 chr16:2070149 nonsynonymous SNV 0.000 1 34 hm5C_associated_SNPs_11215 0 0 0 0 0 exosome 1 0.500231643921092 0.372890591621398 0.999536712157815 hm5C_site_13411 DeepMRMD:0.372890591621398;iRNA_m5C:0.999536712157815 13412 chr16 2070149 2070149 1 + G A rs543718628 2070165 + 2070145 2070185 41 ACCCGCAGCCCGCGAGGCTCCTCTCCTGCTGCCCTCGTGGG ACCCACAGCCCGCGAGGCTCCTCTCCTGCTGCCCTCGTGGG < 41bp 1 0.257139483137129 1 0.0730229020118713 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPW ENSG00000183971 CDS Human protein_coding chr16:2070165 chr16:2070149 nonsynonymous SNV 0.000 1 5 hm5C_associated_SNPs_11216 0 0 0 0 0 exosome 1 0.500231643835907 1 0.999536712328186 hm5C_site_13412 DeepMRMD:1;iRNA_m5C:0.999536712328186 13413 chr16 2070164 2070164 1 + C A rs2286471 2070165 + 2070145 2070185 41 ACCCGCAGCCCGCGAGGCTCCTCTCCTGCTGCCCTCGTGGG ACCCGCAGCCCGCGAGGCTACTCTCCTGCTGCCCTCGTGGG < 41bp 1 0.276822292960026 1 0.0761921107769012 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPW ENSG00000183971 CDS Human protein_coding chr16:2070165 chr16:2070164 nonsynonymous SNV 0.016 0 20 hm5C_associated_SNPs_11217 0 0 0 0 0 exosome 1 0.500231643921249 1 0.999536712157503 hm5C_site_13413 DeepMRMD:1;iRNA_m5C:0.999536712157503 13414 chr16 2106216 2106216 1 + G A rs139929314 2106203 + 2106183 2106223 41 GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAC GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCATCCGGAC < 41bp 1 0.244354962437337 1 0.236528247594833 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2106203 chr16:2106216 nonsynonymous SNV 0.564 0 34 hm5C_associated_SNPs_11219 0 0 1 0 2 Endoplasmic reticulum 1 0.500230532239079 1 0.999538935521841 hm5C_site_13414 DeepMRMD:1;iRNA_m5C:0.999538935521841 13415 chr16 2255420 2255420 1 + G A rs533296599 2255429 + 2255409 2255449 41 GTCTCGCCCTAGGGAGCCATCGATAACTCTACGCTCGGCCT GTCTCGCCCTAAGGAGCCATCGATAACTCTACGCTCGGCCT < 41bp 1 0.633568233099948 1 0.807881951332092 experiment 0.732863533800104 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MLST8 ENSG00000167965 splicing Human protein_coding chr16:2255429 chr16:2255420 . . 0 12 hm5C_associated_SNPs_11220 0 0 0 0 1 chromatin 1 0.50023164391952 0.384236097335816 0.999536712160961 hm5C_site_13415 DeepMRMD:0.384236097335816;iRNA_m5C:0.999536712160961 13416 chr16 2258943 2258943 1 + G A rs568021864 2258956 + 2258936 2258976 41 GCACCCAGGTCAGAGCAGACCCTCCCCTGCCGGCCTGCGCC GCACCCAAGTCAGAGCAGACCCTCCCCTGCCGGCCTGCGCC < 41bp 1 0.144029957591292 1 0.0594737827777863 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MLST8 ENSG00000167965 UTR3 Human protein_coding chr16:2258956 chr16:2258943 . . 0 8 hm5C_associated_SNPs_11221 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13416 DeepMRMD:1;iRNA_m5C:0.999536712157815 13417 chr16 2258971 2258971 1 + T A rs536620725 2258956 + 2258936 2258976 41 GCACCCAGGTCAGAGCAGACCCTCCCCTGCCGGCCTGCGCC GCACCCAGGTCAGAGCAGACCCTCCCCTGCCGGCCAGCGCC < 41bp 1 0.165504305630362 1 0.0529880821704865 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MLST8 ENSG00000167965 UTR3 Human protein_coding chr16:2258956 chr16:2258971 . . 0 36 hm5C_associated_SNPs_11222 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13417 DeepMRMD:1;iRNA_m5C:0.999536712157815 13418 chr16 2258973 2258973 1 + C T rs191875808 2258956 + 2258936 2258976 41 GCACCCAGGTCAGAGCAGACCCTCCCCTGCCGGCCTGCGCC GCACCCAGGTCAGAGCAGACCCTCCCCTGCCGGCCTGTGCC < 41bp 1 0.141986676342265 1 0.0299346148967743 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MLST8 ENSG00000167965 UTR3 Human protein_coding chr16:2258956 chr16:2258973 . . 0 38 hm5C_associated_SNPs_11223 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13418 DeepMRMD:1;iRNA_m5C:0.999536712157815 13419 chr16 2284192 2284192 1 + G A rs137969975 2284209 + 2284189 2284229 41 TGCGCGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCT TGCACGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCT < 41bp 1 0.0515984913662152 1 0.0898837149143219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284209 chr16:2284192 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_11224 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13419 DeepMRMD:1;iRNA_m5C:0.999536712157815 13420 chr16 2284192 2284192 1 + G A rs137969975 2284212 + 2284192 2284232 41 GCGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCTCAA ACGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCTCAA < 41bp 1 0.620495220539956 1 0.249243944883347 experiment 0.759009558920088 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284212 chr16:2284192 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_11225 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_13420 DeepMRMD:1;iRNA_m5C:0.999536712157815 13421 chr16 2506722 2506722 1 + C T rs527471283 2506715 + 2506695 2506735 41 GCAACCCCTGGACCCAAACCCCTGGTCCGCACCAGCCGGGA GCAACCCCTGGACCCAAACCCCTGGTCTGCACCAGCCGGGA < 41bp 1 0.239320705582618 1 0.428792595863342 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control CCNF ENSG00000162063 CDS Human protein_coding chr16:2506715 chr16:2506722 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_11226 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13421 DeepMRMD:1;iRNA_m5C:0.999536712157815 13422 chr16 2506927 2506927 1 + C T rs370448527 2506934 + 2506914 2506954 41 CCCCCAAGTCCCCCGGAGAGCAGTGTTCCCCAGCAACAGGT CCCCCAAGTCCCCTGGAGAGCAGTGTTCCCCAGCAACAGGT < 41bp 1 0.340439846509707 1 0.186806797981262 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCNF ENSG00000162063 CDS Human protein_coding chr16:2506934 chr16:2506927 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_11227 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13422 DeepMRMD:1;iRNA_m5C:0.999536712157815 13423 chr16 2511194 2511194 1 + G A rs77567924 2511197 + 2511177 2511217 41 CATCCGCTGCTCCTCAGGCCCCAGAAGCCTTCACACTCAAG CATCCGCTGCTCCTCAGACCCCAGAAGCCTTCACACTCAAG < 41bp 1 0.339516470734352 1 0.447259694337845 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2511197 chr16:2511194 nonsynonymous SNV 0.007 0 18 hm5C_associated_SNPs_11228 0 0 0 0 1 Ribosome 1 0.500231643873865 1 0.999536712252269 hm5C_site_13423 DeepMRMD:1;iRNA_m5C:0.999536712252269 13424 chr16 2564095 2564095 1 + A G rs11546341 2564089 + 2564069 2564109 41 CGGCCCGCAGAGCTTGCCCCCTCCCCACCCGCAGACATGTC CGGCCCGCAGAGCTTGCCCCCTCCCCGCCCGCAGACATGTC < 41bp 1 0.397517094979539 1 0.263631582260132 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP6V0C ENSG00000185883;ENSG00000259784 UTR5 Human other chr16:2564089 chr16:2564095 . . 0 27 hm5C_associated_SNPs_11230 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921078 1 0.999536712157843 hm5C_site_13424 DeepMRMD:1;iRNA_m5C:0.999536712157843 13425 chr16 2577854 2577854 1 + G A rs148567595 2577853 + 2577833 2577873 41 CACCTCCGCTCCTTCGAGGCCGATGCCTTCCAGGACTTGCT CACCTCCGCTCCTTCGAGGCCAATGCCTTCCAGGACTTGCT < 41bp 1 0.0943292401329214 1 0.0887404978275299 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577853 chr16:2577854 nonsynonymous SNV 0.831 0 22 hm5C_associated_SNPs_11231 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_13425 DeepMRMD:1;iRNA_m5C:0.999536712157816 13426 chr16 2636802 2636802 1 + C T rs532663585 2636784 + 2636764 2636804 41 CCCCAGAGGTCAGGCAGCAACATAGAGCAGTACATTCACGA CCCCAGAGGTCAGGCAGCAACATAGAGCAGTACATTCATGA < 41bp 1 0.236662324661899 1 0.251347988843918 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDPK1 ENSG00000140992 CDS Human protein_coding chr16:2636784 chr16:2636802 synonymous SNV . 0 39 hm5C_associated_SNPs_11232 0 0 1 0 1 Ribosome 1 0.500231643995219 1 0.999536712009563 hm5C_site_13426 DeepMRMD:1;iRNA_m5C:0.999536712009563 13427 chr16 2732753 2732753 1 + C A rs538915638 2732745 + 2732725 2732765 41 GGCAGACCCTGTGCCGGGACCCGAAATCCTTCCTGTACCGC GGCAGACCCTGTGCCGGGACCCGAAATCATTCCTGTACCGC < 41bp 1 0.519084920870398 1 0.422842562198639 experiment 0.961830158259204 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2732745 chr16:2732753 synonymous SNV . 0 29 hm5C_associated_SNPs_11233 0 0 1 0 1 Ribosome 1 0.500231643901328 1 0.999536712197345 hm5C_site_13427 DeepMRMD:1;iRNA_m5C:0.999536712197345 13428 chr16 2757806 2757806 1 + C T rs116113618 2757812 + 2757792 2757832 41 CTCTGCCTCCCAGGCGGGATCGCTGGTTTCTCTCGACCTCG CTCTGCCTCCCAGGTGGGATCGCTGGTTTCTCTCGACCTCG < 41bp 1 0.651367238376434 1 0.323053628206253 experiment 0.697265523247133 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KCTD5 ENSG00000167977 UTR3 Human protein_coding chr16:2757812 chr16:2757806 . . 0 15 hm5C_associated_SNPs_11234 0 0 1 0 0 Ribosome 1 0.500231643918661 1 0.999536712162679 hm5C_site_13428 DeepMRMD:1;iRNA_m5C:0.999536712162679 13429 chr16 2758551 2758551 1 + C T rs56746195 2758568 + 2758548 2758588 41 CCGCCTGCAGGTCAGAGGCTCTGACACTGTCTGGTTTCCAA CCGTCTGCAGGTCAGAGGCTCTGACACTGTCTGGTTTCCAA < 41bp 1 0.493924996583805 1 0.104407519102097 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KCTD5 ENSG00000167977 UTR3 Human protein_coding chr16:2758568 chr16:2758551 . . 0 4 hm5C_associated_SNPs_11235 0 0 1 0 0 Ribosome 1 0.500231643855958 1 0.999536712288084 hm5C_site_13429 DeepMRMD:1;iRNA_m5C:0.999536712288084 13430 chr16 2758569 2758569 1 + T A rs115678449 2758568 + 2758548 2758588 41 CCGCCTGCAGGTCAGAGGCTCTGACACTGTCTGGTTTCCAA CCGCCTGCAGGTCAGAGGCTCAGACACTGTCTGGTTTCCAA < 41bp 1 0.585240976723963 1 0.274328470230103 experiment 0.829518046552074 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KCTD5 ENSG00000167977 UTR3 Human protein_coding chr16:2758568 chr16:2758569 . . 0 22 hm5C_associated_SNPs_11236 0 0 1 0 0 Ribosome 1 0.500231633489474 1 0.999536733021053 hm5C_site_13430 DeepMRMD:1;iRNA_m5C:0.999536733021053 13431 chr16 2812498 2812498 1 + C G rs199497812 2812509 + 2812489 2812529 41 AGACGTGGCCGCTCACGCTCCAGAACCCCAGCCAGACGTGG AGACGTGGCGGCTCACGCTCCAGAACCCCAGCCAGACGTGG < 41bp 1 0.611571858675064 1 0.841499388217926 experiment 0.776856282649871 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2812509 chr16:2812498 nonsynonymous SNV 0.008 2 10 hm5C_associated_SNPs_11237 0 0 1 0 0 Nucleus 1 0.500231643921224 0.317001223564148 0.999536712157552 hm5C_site_13431 DeepMRMD:0.317001223564148;iRNA_m5C:0.999536712157552 13432 chr16 2816034 2816034 1 + T C rs138735123 2816031 + 2816011 2816051 41 CAGGAAAGTTCCCGGACCTCCTCTCGACGCCGAAGAGGCCG CAGGAAAGTTCCCGGACCTCCTCCCGACGCCGAAGAGGCCG < 41bp 1 0.272336080312491 1 0.511520385742188 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816031 chr16:2816034 synonymous SNV . 0 24 hm5C_associated_SNPs_11238 0 0 1 0 0 Nucleus 1 0.500231644378698 0.976959228515624 0.999536711242604 hm5C_site_13432 DeepMRMD:0.976959228515624;iRNA_m5C:0.999536711242604 13433 chr16 2816034 2816034 1 + T C rs138735123 2816050 + 2816030 2816070 41 CCTCTCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACC CCTCCCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACC < 41bp 1 0.180822380559732 1 0.0738278329372406 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816050 chr16:2816034 synonymous SNV . 0 5 hm5C_associated_SNPs_11239 0 0 1 0 0 Nucleus 1 0.500231695799587 1 0.999536608400826 hm5C_site_13433 DeepMRMD:1;iRNA_m5C:0.999536608400826 13434 chr16 2816034 2816034 1 + T C rs138735123 2816052 + 2816032 2816072 41 TCTCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACCAG TCCCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACCAG < 41bp 1 0.172283164489198 1 0.103339731693268 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816052 chr16:2816034 synonymous SNV . 0 3 hm5C_associated_SNPs_11240 0 0 1 0 0 Nucleus 1 0.500231684100404 1 0.999536631799192 hm5C_site_13434 DeepMRMD:1;iRNA_m5C:0.999536631799192 13435 chr16 2816057 2816057 1 + G A rs149546164 2816050 + 2816030 2816070 41 CCTCTCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACC CCTCTCGACGCCGAAGAGGCCGCTCTCAGACACCCCCAACC < 41bp 1 0.160104637023736 1 0.129034698009491 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816050 chr16:2816057 nonsynonymous SNV 0.998 3 28 hm5C_associated_SNPs_11241 0 0 1 0 0 Nucleus 1 0.500231643921164 1 0.999536712157673 hm5C_site_13435 DeepMRMD:1;iRNA_m5C:0.999536712157673 13436 chr16 2816057 2816057 1 + G A rs149546164 2816052 + 2816032 2816072 41 TCTCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACCAG TCTCGACGCCGAAGAGGCCGCTCTCAGACACCCCCAACCAG < 41bp 1 0.153215941417401 1 0.13669341802597 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816052 chr16:2816057 nonsynonymous SNV 0.998 3 26 hm5C_associated_SNPs_11242 0 0 1 0 0 Nucleus 1 0.500231643921288 1 0.999536712157423 hm5C_site_13436 DeepMRMD:1;iRNA_m5C:0.999536712157423 13437 chr16 2818185 2818185 1 + C G rs59593256 2818203 + 2818183 2818223 41 TCCTCCTCCTCCTCTGGCTCCAGTTCTAGTGACTCAGAGGG TCGTCCTCCTCCTCTGGCTCCAGTTCTAGTGACTCAGAGGG < 41bp 1 0.0925632359940779 1 0.363790035247803 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2818203 chr16:2818185 synonymous SNV . 0 3 hm5C_associated_SNPs_11243 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_13437 DeepMRMD:1;iRNA_m5C:0.999536712157815 13438 chr16 2949175 2949175 1 + A G rs7204314 2949190 + 2949170 2949210 41 CTCCCAGGCCACCAACCCAGCCATAGGCTCTTCTCTGTCCG CTCCCGGGCCACCAACCCAGCCATAGGCTCTTCTCTGTCCG < 41bp 1 0.258523267958709 1 0.0801565647125244 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLYWCH2 ENSG00000162076 UTR3 Human protein_coding chr16:2949190 chr16:2949175 . . 0 6 hm5C_associated_SNPs_11244 0 0 1 0 0 Ribosome 1 0.500231643928457 1 0.999536712143086 hm5C_site_13438 DeepMRMD:1;iRNA_m5C:0.999536712143086 13439 chr16 2949209 2949209 1 + C G rs1052167 2949190 + 2949170 2949210 41 CTCCCAGGCCACCAACCCAGCCATAGGCTCTTCTCTGTCCG CTCCCAGGCCACCAACCCAGCCATAGGCTCTTCTCTGTCGG < 41bp 1 0.260759226455309 1 0.0871668756008148 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLYWCH2 ENSG00000162076 UTR3 Human protein_coding chr16:2949190 chr16:2949209 . . 0 40 hm5C_associated_SNPs_11245 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13439 DeepMRMD:1;iRNA_m5C:0.999536712157815 13440 chr16 2964283 2964283 1 + G A rs2074365 2964282 + 2964262 2964302 41 ATGGTGACGCTTCTCACTCACGTGTGAAGGTAATTCTGTGG ATGGTGACGCTTCTCACTCACATGTGAAGGTAATTCTGTGG < 41bp 1 0.339561277502381 1 0.257580697536469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLYWCH1 ENSG00000059122 UTR5 Human protein_coding chr16:2964282 chr16:2964283 . . 0 22 hm5C_associated_SNPs_11246 0 0 1 0 1 chromatin 1 0.500231644849364 1 0.999536710301272 hm5C_site_13440 DeepMRMD:1;iRNA_m5C:0.999536710301272 13441 chr16 2998938 2998938 1 + G A rs11552142 2998937 + 2998917 2998957 41 AGAACAGTGCTCAGAGCTGGCGCTTGCAGACGCAGCTGTCG AGAACAGTGCTCAGAGCTGGCACTTGCAGACGCAGCTGTCG < 41bp 1 0.27446096433386 1 0.0583894550800323 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLYWCH1 ENSG00000059122 CDS Human protein_coding chr16:2998937 chr16:2998938 unknown . 0 22 hm5C_associated_SNPs_11247 0 0 1 0 0 chromatin 1 0.500231643941236 1 0.999536712117529 hm5C_site_13441 DeepMRMD:1;iRNA_m5C:0.999536712117529 13442 chr16 2999608 2999608 1 + C A rs538191771 2999623 + 2999603 2999643 41 CAGAGCCTCCTCCTTACTAACAAGGACCTGTCCGCAGCCGC CAGAGACTCCTCCTTACTAACAAGGACCTGTCCGCAGCCGC < 41bp 1 0.645986243761581 1 0.927721679210663 experiment 0.708027512476837 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLYWCH1 ENSG00000262482 ncRNA_intronic Human antisense chr16:2999623 chr16:2999608 . . 0 6 hm5C_associated_SNPs_11248 0 0 1 2 0 chromatin 1 0.500231643921092 0.144556641578674 0.999536712157815 hm5C_site_13442 DeepMRMD:0.144556641578674;iRNA_m5C:0.999536712157815 13443 chr16 2999613 2999613 1 + T C rs143750803 2999623 + 2999603 2999643 41 CAGAGCCTCCTCCTTACTAACAAGGACCTGTCCGCAGCCGC CAGAGCCTCCCCCTTACTAACAAGGACCTGTCCGCAGCCGC < 41bp 1 0.645798866650606 1 0.912078738212585 experiment 0.708402266698787 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLYWCH1 ENSG00000262482 ncRNA_intronic Human antisense chr16:2999623 chr16:2999613 . . 0 11 hm5C_associated_SNPs_11249 0 0 1 2 0 chromatin 1 0.500231643921092 0.17584252357483 0.999536712157815 hm5C_site_13443 DeepMRMD:0.17584252357483;iRNA_m5C:0.999536712157815 13444 chr16 3021986 3021986 1 + G C rs114149600 3021974 + 3021954 3021994 41 CCATGCCAGCCTGCCCACAGCAGCCTCCTAGAGTTAGCAAC CCATGCCAGCCTGCCCACAGCAGCCTCCTAGACTTAGCAAC < 41bp 1 0.371054953041008 1 0.229553043842316 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAQR4 ENSG00000162073 UTR3 Human protein_coding chr16:3021974 chr16:3021986 . . 0 33 hm5C_associated_SNPs_11250 0 0 1 0 0 Ribosome 1 0.500231643921151 1 0.999536712157698 hm5C_site_13444 DeepMRMD:1;iRNA_m5C:0.999536712157698 13445 chr16 3021987 3021987 1 + T C rs115784080 3021974 + 3021954 3021994 41 CCATGCCAGCCTGCCCACAGCAGCCTCCTAGAGTTAGCAAC CCATGCCAGCCTGCCCACAGCAGCCTCCTAGAGCTAGCAAC < 41bp 1 0.370777972748053 1 0.184141010046005 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAQR4 ENSG00000162073 UTR3 Human protein_coding chr16:3021974 chr16:3021987 . . 0 34 hm5C_associated_SNPs_11251 0 0 1 0 0 Ribosome 1 0.500231643925127 1 0.999536712149746 hm5C_site_13445 DeepMRMD:1;iRNA_m5C:0.999536712149746 13446 chr16 3022474 3022474 1 + G T rs553695782 3022483 + 3022463 3022503 41 GGACCAAGGGGGCGTGGACCCGTCTTGTACCAGCTGGCCAC GGACCAAGGGGTCGTGGACCCGTCTTGTACCAGCTGGCCAC < 41bp 1 0.536087336458168 1 0.206274598836899 experiment 0.927825327083664 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAQR4 ENSG00000162073 UTR3 Human protein_coding chr16:3022483 chr16:3022474 . . 0 12 hm5C_associated_SNPs_11252 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13446 DeepMRMD:1;iRNA_m5C:0.999536712157815 13447 chr16 3022484 3022484 1 + G A rs190250606 3022483 + 3022463 3022503 41 GGACCAAGGGGGCGTGGACCCGTCTTGTACCAGCTGGCCAC GGACCAAGGGGGCGTGGACCCATCTTGTACCAGCTGGCCAC < 41bp 1 0.547072762645819 1 0.392889857292175 experiment 0.905854474708363 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAQR4 ENSG00000162073 UTR3 Human protein_coding chr16:3022483 chr16:3022484 . . 0 22 hm5C_associated_SNPs_11253 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13447 DeepMRMD:1;iRNA_m5C:0.999536712157815 13448 chr16 3022793 3022793 1 + T G rs4149806 3022796 + 3022776 3022816 41 GACAGGAAGGGCCATGTTGCCACATGAGCAAGCTTGGGTGC GACAGGAAGGGCCATGTGGCCACATGAGCAAGCTTGGGTGC < 41bp 1 0.558220144229879 1 0.523958504199982 experiment 0.883559711540241 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PAQR4;PKMYT1 ENSG00000127564;ENSG00000162073 UTR3 Human other chr16:3022796 chr16:3022793 . . 0 18 hm5C_associated_SNPs_11254 0 0 1 0 0 unknown 1 0.500231432072286 0.952082991600036 0.999537135855429 hm5C_site_13448 DeepMRMD:0.952082991600036;iRNA_m5C:0.999537135855429 13449 chr16 3208933 3208933 1 + T A rs575772761 3208925 + 3208905 3208945 41 GAGAACGTTTGTCGTCCTGGCTCGTTGGTCTAGGGGTATGA GAGAACGTTTGTCGTCCTGGCTCGTTGGACTAGGGGTATGA < 41bp 1 0.504326746194426 1 0.270119398832321 experiment 0.991346507611149 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208925 chr16:3208933 . . 0 29 hm5C_associated_SNPs_11255 0 0 1 0 0 unknown 1 0.50023164392128 1 0.999536712157441 hm5C_site_13449 DeepMRMD:1;iRNA_m5C:0.999536712157441 13450 chr16 3208933 3208933 1 + T A rs575772761 3208927 + 3208907 3208947 41 GAACGTTTGTCGTCCTGGCTCGTTGGTCTAGGGGTATGATT GAACGTTTGTCGTCCTGGCTCGTTGGACTAGGGGTATGATT < 41bp 1 0.20043038972197 1 0.263422906398773 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208927 chr16:3208933 . . 0 27 hm5C_associated_SNPs_11256 0 0 1 0 0 unknown 1 0.50023164164511 1 0.999536716709781 hm5C_site_13450 DeepMRMD:1;iRNA_m5C:0.999536716709781 13451 chr16 3208933 3208933 1 + T A rs575772761 3208950 + 3208930 3208970 41 TGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCC TGGACTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCC < 41bp 1 0.422003938463398 1 0.465089172124863 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208950 chr16:3208933 . . 0 4 hm5C_associated_SNPs_11259 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13451 DeepMRMD:1;iRNA_m5C:0.999536712157815 13452 chr16 3208933 3208933 1 + T A rs575772761 3208952 + 3208932 3208972 41 GTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCG GACTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCG < 41bp 1 0.264198828119197 1 0.119610130786896 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208952 chr16:3208933 . . 0 2 hm5C_associated_SNPs_11260 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13452 DeepMRMD:1;iRNA_m5C:0.999536712157815 13453 chr16 3208935 3208935 1 + T C rs564434880 3208925 + 3208905 3208945 41 GAGAACGTTTGTCGTCCTGGCTCGTTGGTCTAGGGGTATGA GAGAACGTTTGTCGTCCTGGCTCGTTGGTCCAGGGGTATGA < 41bp 1 0.559454175624058 1 0.0893347561359406 experiment 0.881091648751884 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208925 chr16:3208935 . . 0 31 hm5C_associated_SNPs_11261 0 0 1 0 0 unknown 1 0.500231593111086 1 0.999536813777828 hm5C_site_13453 DeepMRMD:1;iRNA_m5C:0.999536813777828 13454 chr16 3208935 3208935 1 + T C rs564434880 3208927 + 3208907 3208947 41 GAACGTTTGTCGTCCTGGCTCGTTGGTCTAGGGGTATGATT GAACGTTTGTCGTCCTGGCTCGTTGGTCCAGGGGTATGATT < 41bp 1 0.236262857404371 1 0.0971091091632843 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208927 chr16:3208935 . . 0 29 hm5C_associated_SNPs_11262 0 0 1 0 0 unknown 1 0.500231649339781 1 0.999536701320439 hm5C_site_13454 DeepMRMD:1;iRNA_m5C:0.999536701320439 13455 chr16 3208935 3208935 1 + T C rs564434880 3208934 + 3208914 3208954 41 TGTCGTCCTGGCTCGTTGGTCTAGGGGTATGATTCTCGCTT TGTCGTCCTGGCTCGTTGGTCCAGGGGTATGATTCTCGCTT < 41bp 1 0.549702297778188 1 0.664974331855774 experiment 0.900595404443624 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208934 chr16:3208935 . . 0 22 hm5C_associated_SNPs_11263 0 0 1 0 0 unknown 1 0.500231706216307 0.670051336288452 0.999536587567386 hm5C_site_13455 DeepMRMD:0.670051336288452;iRNA_m5C:0.999536587567386 13456 chr16 3208935 3208935 1 + T C rs564434880 3208950 + 3208930 3208970 41 TGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCC TGGTCCAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCC < 41bp 1 0.432622985030362 1 0.171296507120132 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208950 chr16:3208935 . . 0 6 hm5C_associated_SNPs_11265 0 0 1 0 0 unknown 1 0.500231648030099 1 0.999536703939801 hm5C_site_13456 DeepMRMD:1;iRNA_m5C:0.999536703939801 13457 chr16 3208935 3208935 1 + T C rs564434880 3208952 + 3208932 3208972 41 GTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCG GTCCAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCG < 41bp 1 0.302578003022798 1 0.0860982835292816 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208952 chr16:3208935 . . 0 4 hm5C_associated_SNPs_11266 0 0 1 0 0 unknown 1 0.500231647278443 1 0.999536705443115 hm5C_site_13457 DeepMRMD:1;iRNA_m5C:0.999536705443115 13458 chr16 3208939 3208939 1 + G A rs553500770 3208925 + 3208905 3208945 41 GAGAACGTTTGTCGTCCTGGCTCGTTGGTCTAGGGGTATGA GAGAACGTTTGTCGTCCTGGCTCGTTGGTCTAGGAGTATGA < 41bp 1 0.468060558613509 1 0.161034017801285 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208925 chr16:3208939 . . 0 35 hm5C_associated_SNPs_11267 0 0 1 0 0 unknown 1 0.500231644369396 1 0.999536711261209 hm5C_site_13458 DeepMRMD:1;iRNA_m5C:0.999536711261209 13459 chr16 3208939 3208939 1 + G A rs553500770 3208927 + 3208907 3208947 41 GAACGTTTGTCGTCCTGGCTCGTTGGTCTAGGGGTATGATT GAACGTTTGTCGTCCTGGCTCGTTGGTCTAGGAGTATGATT < 41bp 1 0.232050962470167 1 0.262251317501068 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208927 chr16:3208939 . . 0 33 hm5C_associated_SNPs_11268 0 0 1 0 0 unknown 1 0.500231488418952 1 0.999537023162097 hm5C_site_13459 DeepMRMD:1;iRNA_m5C:0.999537023162097 13460 chr16 3208939 3208939 1 + G A rs553500770 3208934 + 3208914 3208954 41 TGTCGTCCTGGCTCGTTGGTCTAGGGGTATGATTCTCGCTT TGTCGTCCTGGCTCGTTGGTCTAGGAGTATGATTCTCGCTT < 41bp 1 0.691665699164764 1 0.302894413471222 experiment 0.616668601670471 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208934 chr16:3208939 . . 0 26 hm5C_associated_SNPs_11269 0 0 1 0 0 unknown 1 0.500231185799769 1 0.999537628400462 hm5C_site_13460 DeepMRMD:1;iRNA_m5C:0.999537628400462 13461 chr16 3208939 3208939 1 + G A rs553500770 3208950 + 3208930 3208970 41 TGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCC TGGTCTAGGAGTATGATTCTCGCTTTGGGTGCGAGAGGTCC < 41bp 1 0.378331195871588 1 0.313504874706268 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208950 chr16:3208939 . . 0 10 hm5C_associated_SNPs_11271 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_13461 DeepMRMD:1;iRNA_m5C:0.999536712157815 13462 chr16 3208939 3208939 1 + G A rs553500770 3208952 + 3208932 3208972 41 GTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCG GTCTAGGAGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCG < 41bp 1 0.268867227862759 1 0.0881012380123138 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208952 chr16:3208939 . . 0 8 hm5C_associated_SNPs_11272 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13462 DeepMRMD:1;iRNA_m5C:0.999536712157815 13463 chr16 3208961 3208961 1 + C A rs550170016 3208950 + 3208930 3208970 41 TGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCC TGGTCTAGGGGTATGATTCTCGCTTTGGGTGAGAGAGGTCC < 41bp 1 0.439617602470031 1 0.321597218513489 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208950 chr16:3208961 . . 0 32 hm5C_associated_SNPs_11274 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13463 DeepMRMD:1;iRNA_m5C:0.999536712157815 13464 chr16 3208961 3208961 1 + C A rs550170016 3208952 + 3208932 3208972 41 GTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCG GTCTAGGGGTATGATTCTCGCTTTGGGTGAGAGAGGTCCCG < 41bp 1 0.277614362827455 1 0.0636078715324402 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208952 chr16:3208961 . . 0 30 hm5C_associated_SNPs_11275 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13464 DeepMRMD:1;iRNA_m5C:0.999536712157815 13465 chr16 3208961 3208961 1 + C A rs550170016 3208977 + 3208957 3208997 41 GGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCGCT GGTGAGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCGCT < 41bp 1 0.337899003929483 1 0.563344478607178 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208977 chr16:3208961 . . 0 5 hm5C_associated_SNPs_11278 0 0 1 0 0 unknown 1 0.500231643911331 0.873311042785644 0.999536712177337 hm5C_site_13465 DeepMRMD:0.873311042785644;iRNA_m5C:0.999536712177337 13466 chr16 3208985 3208985 1 + G A rs539044007 3208977 + 3208957 3208997 41 GGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCGCT GGTGCGAGAGGTCCCGGGTTCAAATCCCAGACGAGCCCGCT < 41bp 1 0.291601891661972 1 0.785971522331238 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208977 chr16:3208985 . . 0 29 hm5C_associated_SNPs_11281 0 0 1 0 0 unknown 1 0.500231643921094 0.428056955337524 0.999536712157813 hm5C_site_13466 DeepMRMD:0.428056955337524;iRNA_m5C:0.999536712157813 13467 chr16 3208985 3208985 1 + G A rs539044007 3208982 + 3208962 3209002 41 GAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCGCTTTTTT GAGAGGTCCCGGGTTCAAATCCCAGACGAGCCCGCTTTTTT < 41bp 1 0.273657359304345 1 0.7204869389534 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208982 chr16:3208985 . . 0 24 hm5C_associated_SNPs_11282 0 0 1 0 0 unknown 1 0.500231643921091 0.5590261220932 0.999536712157818 hm5C_site_13467 DeepMRMD:0.5590261220932;iRNA_m5C:0.999536712157818 13468 chr16 3208985 3208985 1 + G A rs539044007 3208994 + 3208974 3209014 41 GTTCAAATCCCGGACGAGCCCGCTTTTTTTTTTTTTTCTGA GTTCAAATCCCAGACGAGCCCGCTTTTTTTTTTTTTTCTGA < 41bp 1 0.238182963162751 1 0.252350866794586 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208994 chr16:3208985 . . 0 12 hm5C_associated_SNPs_11283 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_13468 DeepMRMD:1;iRNA_m5C:0.999536712157816 13469 chr16 3208988 3208988 1 + C A rs372301322 3208977 + 3208957 3208997 41 GGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCGCT GGTGCGAGAGGTCCCGGGTTCAAATCCCGGAAGAGCCCGCT < 41bp 1 0.324304416893255 1 0.694439053535461 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208977 chr16:3208988 . . 0 32 hm5C_associated_SNPs_11286 0 0 1 0 0 unknown 1 0.500231643921092 0.611121892929078 0.999536712157815 hm5C_site_13469 DeepMRMD:0.611121892929078;iRNA_m5C:0.999536712157815 13470 chr16 3208988 3208988 1 + C A rs372301322 3208982 + 3208962 3209002 41 GAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCGCTTTTTT GAGAGGTCCCGGGTTCAAATCCCGGAAGAGCCCGCTTTTTT < 41bp 1 0.554051047167205 1 0.789077281951904 experiment 0.891897905665589 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208982 chr16:3208988 . . 0 27 hm5C_associated_SNPs_11287 0 0 1 0 0 unknown 1 0.500231643921092 0.421845436096192 0.999536712157815 hm5C_site_13470 DeepMRMD:0.421845436096192;iRNA_m5C:0.999536712157815 13471 chr16 3208988 3208988 1 + C A rs372301322 3208994 + 3208974 3209014 41 GTTCAAATCCCGGACGAGCCCGCTTTTTTTTTTTTTTCTGA GTTCAAATCCCGGAAGAGCCCGCTTTTTTTTTTTTTTCTGA < 41bp 1 0.277029376008104 1 0.448884665966034 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208994 chr16:3208988 . . 0 15 hm5C_associated_SNPs_11288 0 0 1 0 0 unknown 1 0.500231643819016 1 0.999536712361969 hm5C_site_13471 DeepMRMD:1;iRNA_m5C:0.999536712361969 13472 chr16 3222057 3222057 1 + G A rs148821785 3222051 + 3222031 3222071 41 GGAAATACACGCACGGGAGGCTCGTTGGTCTAGGGGTATGA GGAAATACACGCACGGGAGGCTCGTTAGTCTAGGGGTATGA < 41bp 1 0.454420270179847 1 0.129819273948669 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222051 chr16:3222057 . . 0 27 hm5C_associated_SNPs_11289 0 0 1 0 0 unknown 1 0.500231644304629 1 0.999536711390743 hm5C_site_13472 DeepMRMD:1;iRNA_m5C:0.999536711390743 13473 chr16 3222057 3222057 1 + G A rs148821785 3222053 + 3222033 3222073 41 AAATACACGCACGGGAGGCTCGTTGGTCTAGGGGTATGATT AAATACACGCACGGGAGGCTCGTTAGTCTAGGGGTATGATT < 41bp 1 0.35538273426911 1 0.0406036674976349 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222053 chr16:3222057 . . 0 25 hm5C_associated_SNPs_11290 0 0 1 0 0 unknown 1 0.500231648692429 1 0.999536702615142 hm5C_site_13473 DeepMRMD:1;iRNA_m5C:0.999536702615142 13474 chr16 3222109 3222109 1 + C G rs150958924 3222103 + 3222083 3222123 41 GGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCTAG GGTGCGAGAGGTCCCGGGTTCAAATCGCGGACGAGCCCTAG < 41bp 1 0.474757513588875 1 0.595813155174255 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222103 chr16:3222109 . . 0 27 hm5C_associated_SNPs_11293 0 0 1 0 0 unknown 1 0.500231643921092 0.80837368965149 0.999536712157815 hm5C_site_13474 DeepMRMD:0.80837368965149;iRNA_m5C:0.999536712157815 13475 chr16 3222109 3222109 1 + C G rs150958924 3222110 + 3222090 3222130 41 GAGGTCCCGGGTTCAAATCCCGGACGAGCCCTAGAAGTGGT GAGGTCCCGGGTTCAAATCGCGGACGAGCCCTAGAAGTGGT < 41bp 1 0.339924472622681 1 0.675653278827667 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222110 chr16:3222109 . . 0 20 hm5C_associated_SNPs_11294 0 0 1 0 0 unknown 1 0.500231645257202 0.648693442344666 0.999536709485596 hm5C_site_13475 DeepMRMD:0.648693442344666;iRNA_m5C:0.999536709485596 13476 chr16 3222109 3222109 1 + C G rs150958924 3222114 + 3222094 3222134 41 TCCCGGGTTCAAATCCCGGACGAGCCCTAGAAGTGGTTACT TCCCGGGTTCAAATCGCGGACGAGCCCTAGAAGTGGTTACT < 41bp 1 0.170614787738426 1 0.515015840530396 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222114 chr16:3222109 . . 0 16 hm5C_associated_SNPs_11295 0 0 1 0 0 unknown 1 0.500231643921093 0.969968318939208 0.999536712157815 hm5C_site_13476 DeepMRMD:0.969968318939208;iRNA_m5C:0.999536712157815 13477 chr16 3222109 3222109 1 + C G rs150958924 3222118 + 3222098 3222138 41 GGGTTCAAATCCCGGACGAGCCCTAGAAGTGGTTACTTTTC GGGTTCAAATCGCGGACGAGCCCTAGAAGTGGTTACTTTTC < 41bp 1 0.227462883414419 1 0.130284130573273 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222118 chr16:3222109 . . 0 12 hm5C_associated_SNPs_11296 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13477 DeepMRMD:1;iRNA_m5C:0.999536712157815 13478 chr16 3222109 3222109 1 + C G rs150958924 3222119 + 3222099 3222139 41 GGTTCAAATCCCGGACGAGCCCTAGAAGTGGTTACTTTTCC GGTTCAAATCGCGGACGAGCCCTAGAAGTGGTTACTTTTCC < 41bp 1 0.120172710019617 1 0.134167939424515 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222119 chr16:3222109 . . 0 11 hm5C_associated_SNPs_11297 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_13478 DeepMRMD:1;iRNA_m5C:0.999536712157816 13479 chr16 3222110 3222110 1 + C T rs556784427 3222103 + 3222083 3222123 41 GGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCTAG GGTGCGAGAGGTCCCGGGTTCAAATCCTGGACGAGCCCTAG < 41bp 1 0.426194454477485 1 0.653481066226959 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222103 chr16:3222110 . . 0 28 hm5C_associated_SNPs_11299 0 0 1 0 0 unknown 1 0.500231643921134 0.693037867546082 0.999536712157731 hm5C_site_13479 DeepMRMD:0.693037867546082;iRNA_m5C:0.999536712157731 13480 chr16 3222110 3222110 1 + C T rs556784427 3222108 + 3222088 3222128 41 GAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCTAGAAGTG GAGAGGTCCCGGGTTCAAATCCTGGACGAGCCCTAGAAGTG < 41bp 1 0.283451377134718 1 0.841915607452393 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222108 chr16:3222110 . . 0 23 hm5C_associated_SNPs_11300 0 0 1 0 0 unknown 1 0.500231643921095 0.316168785095214 0.99953671215781 hm5C_site_13480 DeepMRMD:0.316168785095214;iRNA_m5C:0.99953671215781 13481 chr16 3222110 3222110 1 + C T rs556784427 3222114 + 3222094 3222134 41 TCCCGGGTTCAAATCCCGGACGAGCCCTAGAAGTGGTTACT TCCCGGGTTCAAATCCTGGACGAGCCCTAGAAGTGGTTACT < 41bp 1 0.169044506474188 1 0.275790005922318 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222114 chr16:3222110 . . 0 17 hm5C_associated_SNPs_11301 0 0 1 0 0 unknown 1 0.500231643904726 1 0.999536712190549 hm5C_site_13481 DeepMRMD:1;iRNA_m5C:0.999536712190549 13482 chr16 3222110 3222110 1 + C T rs556784427 3222118 + 3222098 3222138 41 GGGTTCAAATCCCGGACGAGCCCTAGAAGTGGTTACTTTTC GGGTTCAAATCCTGGACGAGCCCTAGAAGTGGTTACTTTTC < 41bp 1 0.197178751829064 1 0.074657678604126 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222118 chr16:3222110 . . 0 13 hm5C_associated_SNPs_11302 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13482 DeepMRMD:1;iRNA_m5C:0.999536712157815 13483 chr16 3222110 3222110 1 + C T rs556784427 3222119 + 3222099 3222139 41 GGTTCAAATCCCGGACGAGCCCTAGAAGTGGTTACTTTTCC GGTTCAAATCCTGGACGAGCCCTAGAAGTGGTTACTTTTCC < 41bp 1 0.0960316313146134 1 0.0868725776672363 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222119 chr16:3222110 . . 0 12 hm5C_associated_SNPs_11303 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13483 DeepMRMD:1;iRNA_m5C:0.999536712157815 13484 chr16 3222111 3222111 1 + G A rs548045356 3222103 + 3222083 3222123 41 GGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCTAG GGTGCGAGAGGTCCCGGGTTCAAATCCCAGACGAGCCCTAG < 41bp 1 0.414288742769944 1 0.723427951335907 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222103 chr16:3222111 . . 0 29 hm5C_associated_SNPs_11306 0 0 1 0 0 unknown 1 0.500231643921134 0.553144097328186 0.999536712157732 hm5C_site_13484 DeepMRMD:0.553144097328186;iRNA_m5C:0.999536712157732 13485 chr16 3222111 3222111 1 + G A rs548045356 3222108 + 3222088 3222128 41 GAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCTAGAAGTG GAGAGGTCCCGGGTTCAAATCCCAGACGAGCCCTAGAAGTG < 41bp 1 0.284795199147308 1 0.713216364383698 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222108 chr16:3222111 . . 0 24 hm5C_associated_SNPs_11307 0 0 1 0 0 unknown 1 0.500231643917842 0.573567271232604 0.999536712164316 hm5C_site_13485 DeepMRMD:0.573567271232604;iRNA_m5C:0.999536712164316 13486 chr16 3222111 3222111 1 + G A rs548045356 3222109 + 3222089 3222129 41 AGAGGTCCCGGGTTCAAATCCCGGACGAGCCCTAGAAGTGG AGAGGTCCCGGGTTCAAATCCCAGACGAGCCCTAGAAGTGG < 41bp 1 0.503195090889459 1 0.610735714435577 experiment 0.993609818221083 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222109 chr16:3222111 . . 0 23 hm5C_associated_SNPs_11308 0 0 1 0 0 unknown 1 0.500231643921092 0.778528571128846 0.999536712157815 hm5C_site_13486 DeepMRMD:0.778528571128846;iRNA_m5C:0.999536712157815 13487 chr16 3222111 3222111 1 + G A rs548045356 3222110 + 3222090 3222130 41 GAGGTCCCGGGTTCAAATCCCGGACGAGCCCTAGAAGTGGT GAGGTCCCGGGTTCAAATCCCAGACGAGCCCTAGAAGTGGT < 41bp 1 0.291496719568083 1 0.553157448768616 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222110 chr16:3222111 . . 0 22 hm5C_associated_SNPs_11309 0 0 1 0 0 unknown 1 0.500231643822674 0.893685102462768 0.999536712354652 hm5C_site_13487 DeepMRMD:0.893685102462768;iRNA_m5C:0.999536712354652 13488 chr16 3222111 3222111 1 + G A rs548045356 3222114 + 3222094 3222134 41 TCCCGGGTTCAAATCCCGGACGAGCCCTAGAAGTGGTTACT TCCCGGGTTCAAATCCCAGACGAGCCCTAGAAGTGGTTACT < 41bp 1 0.185324842697745 1 0.420436084270477 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222114 chr16:3222111 . . 0 18 hm5C_associated_SNPs_11310 0 0 1 0 0 unknown 1 0.500231643904729 1 0.999536712190542 hm5C_site_13488 DeepMRMD:1;iRNA_m5C:0.999536712190542 13489 chr16 3222111 3222111 1 + G A rs548045356 3222118 + 3222098 3222138 41 GGGTTCAAATCCCGGACGAGCCCTAGAAGTGGTTACTTTTC GGGTTCAAATCCCAGACGAGCCCTAGAAGTGGTTACTTTTC < 41bp 1 0.16971004312085 1 0.0467751324176788 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222118 chr16:3222111 . . 0 14 hm5C_associated_SNPs_11311 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13489 DeepMRMD:1;iRNA_m5C:0.999536712157815 13490 chr16 3222111 3222111 1 + G A rs548045356 3222119 + 3222099 3222139 41 GGTTCAAATCCCGGACGAGCCCTAGAAGTGGTTACTTTTCC GGTTCAAATCCCAGACGAGCCCTAGAAGTGGTTACTTTTCC < 41bp 1 0.0831607090646663 1 0.0584226548671722 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3222119 chr16:3222111 . . 0 13 hm5C_associated_SNPs_11312 0 0 1 0 0 unknown 1 0.500231643919976 1 0.999536712160048 hm5C_site_13490 DeepMRMD:1;iRNA_m5C:0.999536712160048 13491 chr16 3225697 3225697 1 + G A rs150198758 3225694 + 3225674 3225714 41 AGGTAACGTTGGCGTGTCGCCCGGCTAGCTCAGTCGGTAGA AGGTAACGTTGGCGTGTCGCCCGACTAGCTCAGTCGGTAGA < 41bp 1 0.134595661429714 1 0.244471520185471 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225694 chr16:3225697 . . 0 24 hm5C_associated_SNPs_11315 0 0 1 0 0 unknown 1 0.500267365951742 1 0.999465268096515 hm5C_site_13491 DeepMRMD:1;iRNA_m5C:0.999465268096515 13492 chr16 3225697 3225697 1 + G A rs150198758 3225695 + 3225675 3225715 41 GGTAACGTTGGCGTGTCGCCCGGCTAGCTCAGTCGGTAGAG GGTAACGTTGGCGTGTCGCCCGACTAGCTCAGTCGGTAGAG < 41bp 1 0.422549943681794 1 0.305906444787979 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225695 chr16:3225697 . . 0 23 hm5C_associated_SNPs_11316 0 0 1 0 0 unknown 1 0.500232179253273 1 0.999535641493453 hm5C_site_13492 DeepMRMD:1;iRNA_m5C:0.999535641493453 13493 chr16 3225697 3225697 1 + G A rs150198758 3225698 + 3225678 3225718 41 AACGTTGGCGTGTCGCCCGGCTAGCTCAGTCGGTAGAGCAT AACGTTGGCGTGTCGCCCGACTAGCTCAGTCGGTAGAGCAT < 41bp 1 0.179219174850599 1 0.171834498643875 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225698 chr16:3225697 . . 0 20 hm5C_associated_SNPs_11317 0 0 1 0 0 unknown 1 0.50023164442658 1 0.999536711146839 hm5C_site_13493 DeepMRMD:1;iRNA_m5C:0.999536711146839 13494 chr16 3225697 3225697 1 + G A rs150198758 3225702 + 3225682 3225722 41 TTGGCGTGTCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGA TTGGCGTGTCGCCCGACTAGCTCAGTCGGTAGAGCATGAGA < 41bp 1 0.456728793361727 1 0.169415920972824 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225702 chr16:3225697 . . 0 16 hm5C_associated_SNPs_11318 0 0 1 0 0 unknown 1 0.500231104675671 1 0.999537790648659 hm5C_site_13494 DeepMRMD:1;iRNA_m5C:0.999537790648659 13495 chr16 3225697 3225697 1 + G A rs150198758 3225704 + 3225684 3225724 41 GGCGTGTCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACT GGCGTGTCGCCCGACTAGCTCAGTCGGTAGAGCATGAGACT < 41bp 1 0.201137598780889 1 0.332270443439484 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225704 chr16:3225697 . . 0 14 hm5C_associated_SNPs_11319 0 0 1 0 0 unknown 1 0.500231643921026 1 0.999536712157948 hm5C_site_13495 DeepMRMD:1;iRNA_m5C:0.999536712157948 13496 chr16 3225697 3225697 1 + G A rs150198758 3225708 + 3225688 3225728 41 TGTCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTA TGTCGCCCGACTAGCTCAGTCGGTAGAGCATGAGACTCTTA < 41bp 1 0.693667788321662 1 0.426759243011475 experiment 0.612664423356677 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225708 chr16:3225697 . . 0 10 hm5C_associated_SNPs_11320 0 0 1 0 0 unknown 1 0.500231643920128 1 0.999536712159744 hm5C_site_13496 DeepMRMD:1;iRNA_m5C:0.999536712159744 13497 chr16 3225697 3225697 1 + G A rs150198758 3225716 + 3225696 3225736 41 GGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG GACTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG < 41bp 1 0.628224861672174 1 0.180439710617065 experiment 0.743550276655653 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225716 chr16:3225697 . . 0 2 hm5C_associated_SNPs_11321 0 0 1 0 0 unknown 1 0.500231662266159 1 0.999536675467681 hm5C_site_13497 DeepMRMD:1;iRNA_m5C:0.999536675467681 13498 chr16 3225705 3225705 1 + A C rs187375460 3225693 + 3225673 3225713 41 AAGGTAACGTTGGCGTGTCGCCCGGCTAGCTCAGTCGGTAG AAGGTAACGTTGGCGTGTCGCCCGGCTAGCTCCGTCGGTAG < 41bp 1 0.639123974033527 1 0.327505767345428 experiment 0.721752051932946 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225693 chr16:3225705 . . 0 33 hm5C_associated_SNPs_11322 0 0 1 0 0 unknown 1 0.500231643922212 1 0.999536712155577 hm5C_site_13498 DeepMRMD:1;iRNA_m5C:0.999536712155577 13499 chr16 3225705 3225705 1 + A C rs187375460 3225694 + 3225674 3225714 41 AGGTAACGTTGGCGTGTCGCCCGGCTAGCTCAGTCGGTAGA AGGTAACGTTGGCGTGTCGCCCGGCTAGCTCCGTCGGTAGA < 41bp 1 0.308105010540916 1 0.553477108478546 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225694 chr16:3225705 . . 0 32 hm5C_associated_SNPs_11323 0 0 1 0 0 unknown 1 0.500231644374921 0.893045783042908 0.999536711250157 hm5C_site_13499 DeepMRMD:0.893045783042908;iRNA_m5C:0.999536711250157 13500 chr16 3225705 3225705 1 + A C rs187375460 3225695 + 3225675 3225715 41 GGTAACGTTGGCGTGTCGCCCGGCTAGCTCAGTCGGTAGAG GGTAACGTTGGCGTGTCGCCCGGCTAGCTCCGTCGGTAGAG < 41bp 1 0.554774605757619 1 0.425865560770035 experiment 0.890450788484762 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225695 chr16:3225705 . . 0 31 hm5C_associated_SNPs_11324 0 0 1 0 0 unknown 1 0.500231644201181 1 0.999536711597639 hm5C_site_13500 DeepMRMD:1;iRNA_m5C:0.999536711597639 13501 chr16 3225705 3225705 1 + A C rs187375460 3225698 + 3225678 3225718 41 AACGTTGGCGTGTCGCCCGGCTAGCTCAGTCGGTAGAGCAT AACGTTGGCGTGTCGCCCGGCTAGCTCCGTCGGTAGAGCAT < 41bp 1 0.172624353508949 1 0.202951818704605 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225698 chr16:3225705 . . 0 28 hm5C_associated_SNPs_11325 0 0 1 0 0 unknown 1 0.500231643921067 1 0.999536712157867 hm5C_site_13501 DeepMRMD:1;iRNA_m5C:0.999536712157867 13502 chr16 3225705 3225705 1 + A C rs187375460 3225702 + 3225682 3225722 41 TTGGCGTGTCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGA TTGGCGTGTCGCCCGGCTAGCTCCGTCGGTAGAGCATGAGA < 41bp 1 0.54564844435806 1 0.323012471199036 experiment 0.908703111283879 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225702 chr16:3225705 . . 0 24 hm5C_associated_SNPs_11326 0 0 1 0 0 unknown 1 0.500228490020646 1 0.999543019958708 hm5C_site_13502 DeepMRMD:1;iRNA_m5C:0.999543019958708 13503 chr16 3225705 3225705 1 + A C rs187375460 3225704 + 3225684 3225724 41 GGCGTGTCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACT GGCGTGTCGCCCGGCTAGCTCCGTCGGTAGAGCATGAGACT < 41bp 1 0.0997673887061249 1 0.388149529695511 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225704 chr16:3225705 . . 0 22 hm5C_associated_SNPs_11327 0 0 1 0 0 unknown 1 0.500231643921113 1 0.999536712157775 hm5C_site_13503 DeepMRMD:1;iRNA_m5C:0.999536712157775 13504 chr16 3225705 3225705 1 + A C rs187375460 3225708 + 3225688 3225728 41 TGTCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTA TGTCGCCCGGCTAGCTCCGTCGGTAGAGCATGAGACTCTTA < 41bp 1 0.664251694737399 1 0.585226655006409 experiment 0.671496610525202 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225708 chr16:3225705 . . 0 18 hm5C_associated_SNPs_11328 0 0 1 0 0 unknown 1 0.500231643921094 0.829546689987182 0.999536712157812 hm5C_site_13504 DeepMRMD:0.829546689987182;iRNA_m5C:0.999536712157812 13505 chr16 3225705 3225705 1 + A C rs187375460 3225716 + 3225696 3225736 41 GGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGG GGCTAGCTCCGTCGGTAGAGCATGAGACTCTTAATCTCAGG < 41bp 1 0.673625821564603 1 0.354216992855072 experiment 0.652748356870793 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225716 chr16:3225705 . . 0 10 hm5C_associated_SNPs_11329 0 0 1 0 0 unknown 1 0.500231643913245 1 0.99953671217351 hm5C_site_13505 DeepMRMD:1;iRNA_m5C:0.99953671217351 13506 chr16 3225705 3225705 1 + A C rs187375460 3225723 + 3225703 3225743 41 TCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG TCCGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG < 41bp 1 0.110731317956831 1 0.0184809267520905 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225723 chr16:3225705 . . 0 3 hm5C_associated_SNPs_11330 0 0 1 0 0 unknown 1 0.500228021693607 1 0.999543956612785 hm5C_site_13506 DeepMRMD:1;iRNA_m5C:0.999543956612785 13507 chr16 3225705 3225705 1 + A C rs187375460 3225725 + 3225705 3225745 41 AGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGT CGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGT < 41bp 1 0.333250428659951 1 0.167083561420441 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3225725 chr16:3225705 . . 0 1 hm5C_associated_SNPs_11331 0 0 1 0 0 unknown 1 0.500231646239214 1 0.999536707521572 hm5C_site_13507 DeepMRMD:1;iRNA_m5C:0.999536707521572 13508 chr16 3239696 3239696 1 + G A rs542032816 3239703 + 3239683 3239723 41 GGGTTCAAATCCCGGACGAGCCCGGCTTTTGGTGCAGGGTA GGGTTCAAATCCCAGACGAGCCCGGCTTTTGGTGCAGGGTA < 41bp 1 0.359467874733409 1 0.117489784955978 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3239703 chr16:3239696 . . 0 14 hm5C_associated_SNPs_11333 0 0 1 0 0 unknown 1 0.500231643917714 1 0.999536712164571 hm5C_site_13508 DeepMRMD:1;iRNA_m5C:0.999536712164571 13509 chr16 3239696 3239696 1 + G A rs542032816 3239704 + 3239684 3239724 41 GGTTCAAATCCCGGACGAGCCCGGCTTTTGGTGCAGGGTAA GGTTCAAATCCCAGACGAGCCCGGCTTTTGGTGCAGGGTAA < 41bp 1 0.392953421295532 1 0.334304988384247 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3239704 chr16:3239696 . . 0 13 hm5C_associated_SNPs_11334 0 0 1 0 0 unknown 1 0.500231643918949 1 0.999536712162102 hm5C_site_13509 DeepMRMD:1;iRNA_m5C:0.999536712162102 13510 chr16 3239696 3239696 1 + G A rs542032816 3239705 + 3239685 3239725 41 GTTCAAATCCCGGACGAGCCCGGCTTTTGGTGCAGGGTAAA GTTCAAATCCCAGACGAGCCCGGCTTTTGGTGCAGGGTAAA < 41bp 1 0.568503277094464 1 0.485454112291336 experiment 0.862993445811072 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3239705 chr16:3239696 . . 0 12 hm5C_associated_SNPs_11335 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13510 DeepMRMD:1;iRNA_m5C:0.999536712157815 13511 chr16 3241503 3241503 1 + C A rs117373271 3241504 + 3241484 3241524 41 AAAACGTTCCCAGGGAAGCCCGGCTAGCTCAGTCGGTAGAG AAAACGTTCCCAGGGAAGCACGGCTAGCTCAGTCGGTAGAG < 41bp 1 0.482731277227171 1 0.356812626123428 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241504 chr16:3241503 . . 0 20 hm5C_associated_SNPs_11336 0 0 1 0 0 unknown 1 0.500231645083295 1 0.99953670983341 hm5C_site_13511 DeepMRMD:1;iRNA_m5C:0.99953670983341 13512 chr16 3241503 3241503 1 + C A rs117373271 3241507 + 3241487 3241527 41 ACGTTCCCAGGGAAGCCCGGCTAGCTCAGTCGGTAGAGCAT ACGTTCCCAGGGAAGCACGGCTAGCTCAGTCGGTAGAGCAT < 41bp 1 0.198292087125272 1 0.162020117044449 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241507 chr16:3241503 . . 0 17 hm5C_associated_SNPs_11337 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13512 DeepMRMD:1;iRNA_m5C:0.999536712157815 13513 chr16 3241503 3241503 1 + C A rs117373271 3241511 + 3241491 3241531 41 TCCCAGGGAAGCCCGGCTAGCTCAGTCGGTAGAGCATGGGA TCCCAGGGAAGCACGGCTAGCTCAGTCGGTAGAGCATGGGA < 41bp 1 0.590667068126041 1 0.16831386089325 experiment 0.818665863747918 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241511 chr16:3241503 . . 0 13 hm5C_associated_SNPs_11338 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_13513 DeepMRMD:1;iRNA_m5C:0.999536712157815 13514 chr16 3241503 3241503 1 + C A rs117373271 3241513 + 3241493 3241533 41 CCAGGGAAGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACT CCAGGGAAGCACGGCTAGCTCAGTCGGTAGAGCATGGGACT < 41bp 1 0.478550301810814 1 0.290076911449432 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241513 chr16:3241503 . . 0 11 hm5C_associated_SNPs_11339 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13514 DeepMRMD:1;iRNA_m5C:0.999536712157815 13515 chr16 3241527 3241527 1 + T G rs139156010 3241507 + 3241487 3241527 41 ACGTTCCCAGGGAAGCCCGGCTAGCTCAGTCGGTAGAGCAT ACGTTCCCAGGGAAGCCCGGCTAGCTCAGTCGGTAGAGCAG < 41bp 1 0.198529442957703 1 0.139939218759537 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241507 chr16:3241527 . . 0 41 hm5C_associated_SNPs_11341 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13515 DeepMRMD:1;iRNA_m5C:0.999536712157815 13516 chr16 3241527 3241527 1 + T G rs139156010 3241511 + 3241491 3241531 41 TCCCAGGGAAGCCCGGCTAGCTCAGTCGGTAGAGCATGGGA TCCCAGGGAAGCCCGGCTAGCTCAGTCGGTAGAGCAGGGGA < 41bp 1 0.675519914574463 1 0.222015738487244 experiment 0.648960170851073 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241511 chr16:3241527 . . 0 37 hm5C_associated_SNPs_11342 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13516 DeepMRMD:1;iRNA_m5C:0.999536712157815 13517 chr16 3241527 3241527 1 + T G rs139156010 3241513 + 3241493 3241533 41 CCAGGGAAGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACT CCAGGGAAGCCCGGCTAGCTCAGTCGGTAGAGCAGGGGACT < 41bp 1 0.456135756634328 1 0.337490677833557 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241513 chr16:3241527 . . 0 35 hm5C_associated_SNPs_11343 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13517 DeepMRMD:1;iRNA_m5C:0.999536712157815 13518 chr16 3241527 3241527 1 + T G rs139156010 3241532 + 3241512 3241552 41 TCAGTCGGTAGAGCATGGGACTCTTAATCTCAGGGTCGTGG TCAGTCGGTAGAGCAGGGGACTCTTAATCTCAGGGTCGTGG < 41bp 1 0.0917178887461765 1 0.0265021026134491 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241532 chr16:3241527 . . 0 16 hm5C_associated_SNPs_11345 0 0 1 0 0 unknown 1 0.500231646068396 1 0.999536707863208 hm5C_site_13518 DeepMRMD:1;iRNA_m5C:0.999536707863208 13519 chr16 3241527 3241527 1 + T G rs139156010 3241534 + 3241514 3241554 41 AGTCGGTAGAGCATGGGACTCTTAATCTCAGGGTCGTGGGT AGTCGGTAGAGCAGGGGACTCTTAATCTCAGGGTCGTGGGT < 41bp 1 0.445334264827843 1 0.374183475971222 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241534 chr16:3241527 . . 0 14 hm5C_associated_SNPs_11346 0 0 1 0 0 unknown 1 0.500231643927925 1 0.999536712144149 hm5C_site_13519 DeepMRMD:1;iRNA_m5C:0.999536712144149 13520 chr16 3241546 3241546 1 + G A rs540270887 3241532 + 3241512 3241552 41 TCAGTCGGTAGAGCATGGGACTCTTAATCTCAGGGTCGTGG TCAGTCGGTAGAGCATGGGACTCTTAATCTCAGGATCGTGG < 41bp 1 0.0743782628847031 1 0.0187948048114777 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241532 chr16:3241546 . . 0 35 hm5C_associated_SNPs_11348 0 0 1 0 0 unknown 1 0.500231960469125 1 0.999536079061751 hm5C_site_13520 DeepMRMD:1;iRNA_m5C:0.999536079061751 13521 chr16 3241546 3241546 1 + G A rs540270887 3241534 + 3241514 3241554 41 AGTCGGTAGAGCATGGGACTCTTAATCTCAGGGTCGTGGGT AGTCGGTAGAGCATGGGACTCTTAATCTCAGGATCGTGGGT < 41bp 1 0.393995558543285 1 0.230729609727859 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241534 chr16:3241546 . . 0 33 hm5C_associated_SNPs_11349 0 0 1 0 0 unknown 1 0.500231643921085 1 0.999536712157829 hm5C_site_13521 DeepMRMD:1;iRNA_m5C:0.999536712157829 13522 chr16 3241546 3241546 1 + G A rs540270887 3241540 + 3241520 3241560 41 TAGAGCATGGGACTCTTAATCTCAGGGTCGTGGGTTCGAGC TAGAGCATGGGACTCTTAATCTCAGGATCGTGGGTTCGAGC < 41bp 1 0.674434562556461 1 0.68036937713623 experiment 0.651130874887078 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241540 chr16:3241546 . . 0 27 hm5C_associated_SNPs_11350 0 0 1 0 0 unknown 1 0.500231645287317 0.63926124572754 0.999536709425366 hm5C_site_13522 DeepMRMD:0.63926124572754;iRNA_m5C:0.999536709425366 13523 chr16 3241546 3241546 1 + G A rs540270887 3241548 + 3241528 3241568 41 GGGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTT GGGACTCTTAATCTCAGGATCGTGGGTTCGAGCCCCACGTT < 41bp 1 0.656430728359671 1 0.612864434719086 experiment 0.687138543280658 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241548 chr16:3241546 . . 0 19 hm5C_associated_SNPs_11351 0 0 1 0 0 unknown 1 0.500231643919828 0.774271130561828 0.999536712160344 hm5C_site_13523 DeepMRMD:0.774271130561828;iRNA_m5C:0.999536712160344 13524 chr16 3241546 3241546 1 + G A rs540270887 3241556 + 3241536 3241576 41 TAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGACT TAATCTCAGGATCGTGGGTTCGAGCCCCACGTTGGGCGACT < 41bp 1 0.362335865144217 1 0.301983296871185 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241556 chr16:3241546 . . 0 11 hm5C_associated_SNPs_11352 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13524 DeepMRMD:1;iRNA_m5C:0.999536712157815 13525 chr16 3241546 3241546 1 + G A rs540270887 3241560 + 3241540 3241580 41 CTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGACTTGTT CTCAGGATCGTGGGTTCGAGCCCCACGTTGGGCGACTTGTT < 41bp 1 0.338525160687841 1 0.104791522026062 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241560 chr16:3241546 . . 0 7 hm5C_associated_SNPs_11353 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13525 DeepMRMD:1;iRNA_m5C:0.999536712157815 13526 chr16 3241546 3241546 1 + G A rs540270887 3241562 + 3241542 3241582 41 CAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGACTTGTTTT CAGGATCGTGGGTTCGAGCCCCACGTTGGGCGACTTGTTTT < 41bp 1 0.343521048576582 1 0.12390074133873 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241562 chr16:3241546 . . 0 5 hm5C_associated_SNPs_11354 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13526 DeepMRMD:1;iRNA_m5C:0.999536712157815 13527 chr16 3241999 3241999 1 + T C rs2238394 3241991 + 3241971 3242011 41 TAAAGGGCCTGCTGCTGTGGCTCGTTGGTCTAGGGGTATGA TAAAGGGCCTGCTGCTGTGGCTCGTTGGCCTAGGGGTATGA < 41bp 1 0.433796191631254 1 0.115485489368439 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241991 chr16:3241999 . . 0 29 hm5C_associated_SNPs_11355 0 0 1 0 0 unknown 1 0.500231643920811 1 0.999536712158379 hm5C_site_13527 DeepMRMD:1;iRNA_m5C:0.999536712158379 13528 chr16 3241999 3241999 1 + T C rs2238394 3241993 + 3241973 3242013 41 AAGGGCCTGCTGCTGTGGCTCGTTGGTCTAGGGGTATGATT AAGGGCCTGCTGCTGTGGCTCGTTGGCCTAGGGGTATGATT < 41bp 1 0.146390072723907 1 0.156888008117676 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241993 chr16:3241999 . . 0 27 hm5C_associated_SNPs_11356 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157817 hm5C_site_13528 DeepMRMD:1;iRNA_m5C:0.999536712157817 13529 chr16 3241999 3241999 1 + T C rs2238394 3242000 + 3241980 3242020 41 TGCTGCTGTGGCTCGTTGGTCTAGGGGTATGATTCTCGCTT TGCTGCTGTGGCTCGTTGGCCTAGGGGTATGATTCTCGCTT < 41bp 1 0.623126621464248 1 0.734892070293427 experiment 0.753746757071503 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242000 chr16:3241999 . . 0 20 hm5C_associated_SNPs_11357 0 0 1 0 0 unknown 1 0.500231643920992 0.530215859413146 0.999536712158015 hm5C_site_13529 DeepMRMD:0.530215859413146;iRNA_m5C:0.999536712158015 13530 chr16 3241999 3241999 1 + T C rs2238394 3242016 + 3241996 3242036 41 TGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCC TGGCCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCC < 41bp 1 0.314309161232582 1 0.160110652446747 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242016 chr16:3241999 . . 0 4 hm5C_associated_SNPs_11359 0 0 1 0 0 unknown 1 0.500231643897703 1 0.999536712204594 hm5C_site_13530 DeepMRMD:1;iRNA_m5C:0.999536712204594 13531 chr16 3241999 3241999 1 + T C rs2238394 3242018 + 3241998 3242038 41 GTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCCCG GCCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCCCG < 41bp 1 0.428758421823165 1 0.0553041994571686 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242018 chr16:3241999 . . 0 2 hm5C_associated_SNPs_11360 0 0 1 0 0 unknown 1 0.500231643311845 1 0.99953671337631 hm5C_site_13531 DeepMRMD:1;iRNA_m5C:0.99953671337631 13532 chr16 3242001 3242001 1 + T A rs569222812 3241991 + 3241971 3242011 41 TAAAGGGCCTGCTGCTGTGGCTCGTTGGTCTAGGGGTATGA TAAAGGGCCTGCTGCTGTGGCTCGTTGGTCAAGGGGTATGA < 41bp 1 0.500791390166715 1 0.116205036640167 experiment 0.998417219666569 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241991 chr16:3242001 . . 0 31 hm5C_associated_SNPs_11361 0 0 1 0 0 unknown 1 0.500231635139548 1 0.999536729720903 hm5C_site_13532 DeepMRMD:1;iRNA_m5C:0.999536729720903 13533 chr16 3242001 3242001 1 + T A rs569222812 3241993 + 3241973 3242013 41 AAGGGCCTGCTGCTGTGGCTCGTTGGTCTAGGGGTATGATT AAGGGCCTGCTGCTGTGGCTCGTTGGTCAAGGGGTATGATT < 41bp 1 0.185577265274838 1 0.109049111604691 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241993 chr16:3242001 . . 0 29 hm5C_associated_SNPs_11362 0 0 1 0 0 unknown 1 0.500231640995767 1 0.999536718008466 hm5C_site_13533 DeepMRMD:1;iRNA_m5C:0.999536718008466 13534 chr16 3242001 3242001 1 + T A rs569222812 3242016 + 3241996 3242036 41 TGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCC TGGTCAAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCC < 41bp 1 0.329454313588183 1 0.0982479453086853 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242016 chr16:3242001 . . 0 6 hm5C_associated_SNPs_11365 0 0 1 0 0 unknown 1 0.50023163343694 1 0.999536733126119 hm5C_site_13534 DeepMRMD:1;iRNA_m5C:0.999536733126119 13535 chr16 3242001 3242001 1 + T A rs569222812 3242018 + 3241998 3242038 41 GTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCCCG GTCAAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCCCG < 41bp 1 0.401538522051654 1 0.0742889046669006 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242018 chr16:3242001 . . 0 4 hm5C_associated_SNPs_11366 0 0 1 0 0 unknown 1 0.500231605654901 1 0.999536788690198 hm5C_site_13535 DeepMRMD:1;iRNA_m5C:0.999536788690198 13536 chr16 3242002 3242002 1 + A C rs111246815 3241991 + 3241971 3242011 41 TAAAGGGCCTGCTGCTGTGGCTCGTTGGTCTAGGGGTATGA TAAAGGGCCTGCTGCTGTGGCTCGTTGGTCTCGGGGTATGA < 41bp 1 0.414085378836213 1 0.138085573911667 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241991 chr16:3242002 . . 0 32 hm5C_associated_SNPs_11367 0 0 1 0 0 unknown 1 0.500231642634305 1 0.999536714731391 hm5C_site_13536 DeepMRMD:1;iRNA_m5C:0.999536714731391 13537 chr16 3242002 3242002 1 + A C rs111246815 3241993 + 3241973 3242013 41 AAGGGCCTGCTGCTGTGGCTCGTTGGTCTAGGGGTATGATT AAGGGCCTGCTGCTGTGGCTCGTTGGTCTCGGGGTATGATT < 41bp 1 0.19628934822882 1 0.0904370844364166 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241993 chr16:3242002 . . 0 30 hm5C_associated_SNPs_11368 0 0 1 0 0 unknown 1 0.500231643918311 1 0.999536712163378 hm5C_site_13537 DeepMRMD:1;iRNA_m5C:0.999536712163378 13538 chr16 3242002 3242002 1 + A C rs111246815 3242016 + 3241996 3242036 41 TGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCC TGGTCTCGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCC < 41bp 1 0.262359684729892 1 0.204596072435379 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242016 chr16:3242002 . . 0 7 hm5C_associated_SNPs_11371 0 0 1 0 0 unknown 1 0.500231641941831 1 0.999536716116337 hm5C_site_13538 DeepMRMD:1;iRNA_m5C:0.999536716116337 13539 chr16 3242002 3242002 1 + A C rs111246815 3242018 + 3241998 3242038 41 GTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCCCG GTCTCGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCCCG < 41bp 1 0.394173450277456 1 0.0840139985084534 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242018 chr16:3242002 . . 0 5 hm5C_associated_SNPs_11372 0 0 1 0 0 unknown 1 0.500230546364856 1 0.999538907270288 hm5C_site_13539 DeepMRMD:1;iRNA_m5C:0.999538907270288 13540 chr16 3242010 3242010 1 + G C rs111264639 3241991 + 3241971 3242011 41 TAAAGGGCCTGCTGCTGTGGCTCGTTGGTCTAGGGGTATGA TAAAGGGCCTGCTGCTGTGGCTCGTTGGTCTAGGGGTATCA < 41bp 1 0.425333064959339 1 0.16801854968071 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241991 chr16:3242010 . . 0 40 hm5C_associated_SNPs_11373 0 0 1 0 0 unknown 1 0.500231643777003 1 0.999536712445994 hm5C_site_13540 DeepMRMD:1;iRNA_m5C:0.999536712445994 13541 chr16 3242010 3242010 1 + G C rs111264639 3241993 + 3241973 3242013 41 AAGGGCCTGCTGCTGTGGCTCGTTGGTCTAGGGGTATGATT AAGGGCCTGCTGCTGTGGCTCGTTGGTCTAGGGGTATCATT < 41bp 1 0.192828785638471 1 0.240616738796234 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3241993 chr16:3242010 . . 0 38 hm5C_associated_SNPs_11374 0 0 1 0 0 unknown 1 0.500231643354033 1 0.999536713291935 hm5C_site_13541 DeepMRMD:1;iRNA_m5C:0.999536713291935 13542 chr16 3242010 3242010 1 + G C rs111264639 3242000 + 3241980 3242020 41 TGCTGCTGTGGCTCGTTGGTCTAGGGGTATGATTCTCGCTT TGCTGCTGTGGCTCGTTGGTCTAGGGGTATCATTCTCGCTT < 41bp 1 0.677732270145204 1 0.662283539772034 experiment 0.644535459709591 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242000 chr16:3242010 . . 0 31 hm5C_associated_SNPs_11375 0 0 1 0 0 unknown 1 0.500231611548629 0.675432920455932 0.999536776902742 hm5C_site_13542 DeepMRMD:0.675432920455932;iRNA_m5C:0.999536776902742 13543 chr16 3242010 3242010 1 + G C rs111264639 3242016 + 3241996 3242036 41 TGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCC TGGTCTAGGGGTATCATTCTCGCTTAGGATGCGAGAGGTCC < 41bp 1 0.318744884552119 1 0.181608587503433 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242016 chr16:3242010 . . 0 15 hm5C_associated_SNPs_11377 0 0 1 0 0 unknown 1 0.500231914335938 1 0.999536171328123 hm5C_site_13543 DeepMRMD:1;iRNA_m5C:0.999536171328123 13544 chr16 3242010 3242010 1 + G C rs111264639 3242018 + 3241998 3242038 41 GTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCCCG GTCTAGGGGTATCATTCTCGCTTAGGATGCGAGAGGTCCCG < 41bp 1 0.373230521827515 1 0.0653319656848907 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242018 chr16:3242010 . . 0 13 hm5C_associated_SNPs_11378 0 0 1 0 0 unknown 1 0.50023165202955 1 0.999536695940899 hm5C_site_13544 DeepMRMD:1;iRNA_m5C:0.999536695940899 13545 chr16 3242014 3242014 1 + C G rs533908867 3242000 + 3241980 3242020 41 TGCTGCTGTGGCTCGTTGGTCTAGGGGTATGATTCTCGCTT TGCTGCTGTGGCTCGTTGGTCTAGGGGTATGATTGTCGCTT < 41bp 1 0.639626888603619 1 0.705784797668457 experiment 0.720746222792761 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242000 chr16:3242014 . . 0 35 hm5C_associated_SNPs_11380 0 0 1 0 0 unknown 1 0.50023141393805 0.588430404663086 0.999537172123899 hm5C_site_13545 DeepMRMD:0.588430404663086;iRNA_m5C:0.999537172123899 13546 chr16 3242014 3242014 1 + C G rs533908867 3242016 + 3241996 3242036 41 TGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCC TGGTCTAGGGGTATGATTGTCGCTTAGGATGCGAGAGGTCC < 41bp 1 0.268669720116493 1 0.112295269966125 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242016 chr16:3242014 . . 0 19 hm5C_associated_SNPs_11381 0 0 1 0 0 unknown 1 0.500231642841513 1 0.999536714316973 hm5C_site_13546 DeepMRMD:1;iRNA_m5C:0.999536714316973 13547 chr16 3242014 3242014 1 + C G rs533908867 3242018 + 3241998 3242038 41 GTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCCCG GTCTAGGGGTATGATTGTCGCTTAGGATGCGAGAGGTCCCG < 41bp 1 0.402037887884811 1 0.0768651068210602 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242018 chr16:3242014 . . 0 17 hm5C_associated_SNPs_11382 0 0 1 0 0 unknown 1 0.500231643004702 1 0.999536713990596 hm5C_site_13547 DeepMRMD:1;iRNA_m5C:0.999536713990596 13548 chr16 3242017 3242017 1 + G A rs188219465 3242000 + 3241980 3242020 41 TGCTGCTGTGGCTCGTTGGTCTAGGGGTATGATTCTCGCTT TGCTGCTGTGGCTCGTTGGTCTAGGGGTATGATTCTCACTT < 41bp 1 0.653302984110461 1 0.729753971099854 experiment 0.693394031779079 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242000 chr16:3242017 . . 0 38 hm5C_associated_SNPs_11383 0 0 1 0 0 unknown 1 0.500231511364291 0.540492057800292 0.999536977271419 hm5C_site_13548 DeepMRMD:0.540492057800292;iRNA_m5C:0.999536977271419 13549 chr16 3242017 3242017 1 + G A rs188219465 3242014 + 3241994 3242034 41 GTTGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGT GTTGGTCTAGGGGTATGATTCTCACTTAGGATGCGAGAGGT < 41bp 1 0.464458439019542 1 0.628574311733246 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242014 chr16:3242017 . . 0 24 hm5C_associated_SNPs_11384 0 0 1 0 0 unknown 1 0.500231643917904 0.742851376533508 0.999536712164193 hm5C_site_13549 DeepMRMD:0.742851376533508;iRNA_m5C:0.999536712164193 Blood protein levels 13550 chr16 3242017 3242017 1 + G A rs188219465 3242016 + 3241996 3242036 41 TGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCC TGGTCTAGGGGTATGATTCTCACTTAGGATGCGAGAGGTCC < 41bp 1 0.257317786890691 1 0.122114568948746 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242016 chr16:3242017 . . 0 22 hm5C_associated_SNPs_11385 0 0 1 0 0 unknown 1 0.500231643221635 1 0.999536713556729 hm5C_site_13550 DeepMRMD:1;iRNA_m5C:0.999536713556729 13551 chr16 3242017 3242017 1 + G A rs188219465 3242018 + 3241998 3242038 41 GTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCCCG GTCTAGGGGTATGATTCTCACTTAGGATGCGAGAGGTCCCG < 41bp 1 0.41470136661298 1 0.0532015562057495 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242018 chr16:3242017 . . 0 20 hm5C_associated_SNPs_11386 0 0 1 0 0 unknown 1 0.500231643893009 1 0.999536712213982 hm5C_site_13551 DeepMRMD:1;iRNA_m5C:0.999536712213982 13552 chr16 3242024 3242024 1 + A G rs11863608 3242014 + 3241994 3242034 41 GTTGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGT GTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGT < 41bp 1 0.67661134365418 1 0.752784013748169 experiment 0.646777312691641 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242014 chr16:3242024 . . 0 31 hm5C_associated_SNPs_11390 0 0 1 0 0 unknown 1 0.500231643921095 0.494431972503662 0.99953671215781 hm5C_site_13552 DeepMRMD:0.494431972503662;iRNA_m5C:0.99953671215781 13553 chr16 3242024 3242024 1 + A G rs11863608 3242016 + 3241996 3242036 41 TGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCC TGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGTCC < 41bp 1 0.34145851422547 1 0.200170159339905 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242016 chr16:3242024 . . 0 29 hm5C_associated_SNPs_11391 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13553 DeepMRMD:1;iRNA_m5C:0.999536712157815 13554 chr16 3242024 3242024 1 + A G rs11863608 3242018 + 3241998 3242038 41 GTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCCCG GTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCG < 41bp 1 0.396910072313639 1 0.0802971124649048 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242018 chr16:3242024 . . 0 27 hm5C_associated_SNPs_11392 0 0 1 0 0 unknown 1 0.50023164392109 1 0.999536712157819 hm5C_site_13554 DeepMRMD:1;iRNA_m5C:0.999536712157819 13555 chr16 3242024 3242024 1 + A G rs11863608 3242027 + 3242007 3242047 41 TATGATTCTCGCTTAGGATGCGAGAGGTCCCGGGTTCAAAT TATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGTTCAAAT < 41bp 1 0.699658525834976 1 0.486161142587662 experiment 0.600682948330048 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242027 chr16:3242024 . . 0 18 hm5C_associated_SNPs_11393 0 0 1 0 0 unknown 1 0.500231643921269 1 0.999536712157462 hm5C_site_13555 DeepMRMD:1;iRNA_m5C:0.999536712157462 13556 chr16 3242024 3242024 1 + A G rs11863608 3242043 + 3242023 3242063 41 GATGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTC GGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTC < 41bp 1 0.478639896751393 1 0.505008518695831 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242043 chr16:3242024 . . 0 2 hm5C_associated_SNPs_11396 0 0 1 0 0 unknown 1 0.500231643921093 0.989982962608338 0.999536712157815 hm5C_site_13556 DeepMRMD:0.989982962608338;iRNA_m5C:0.999536712157815 13557 chr16 3242026 3242026 1 + G A rs183688971 3242016 + 3241996 3242036 41 TGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCC TGGTCTAGGGGTATGATTCTCGCTTAGGATACGAGAGGTCC < 41bp 1 0.347317805865401 1 0.27797794342041 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242016 chr16:3242026 . . 0 31 hm5C_associated_SNPs_11398 0 0 1 0 0 unknown 1 0.500231643928458 1 0.999536712143085 hm5C_site_13557 DeepMRMD:1;iRNA_m5C:0.999536712143085 13558 chr16 3242026 3242026 1 + G A rs183688971 3242018 + 3241998 3242038 41 GTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCCCG GTCTAGGGGTATGATTCTCGCTTAGGATACGAGAGGTCCCG < 41bp 1 0.376576241016517 1 0.0834580361843109 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242018 chr16:3242026 . . 0 29 hm5C_associated_SNPs_11399 0 0 1 0 0 unknown 1 0.500231643913713 1 0.999536712172573 hm5C_site_13558 DeepMRMD:1;iRNA_m5C:0.999536712172573 13559 chr16 3242026 3242026 1 + G A rs183688971 3242043 + 3242023 3242063 41 GATGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTC GATACGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTC < 41bp 1 0.432059324970903 1 0.560364425182343 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242043 chr16:3242026 . . 0 4 hm5C_associated_SNPs_11404 0 0 1 0 0 unknown 1 0.500231643921092 0.879271149635314 0.999536712157815 hm5C_site_13559 DeepMRMD:0.879271149635314;iRNA_m5C:0.999536712157815 13560 chr16 3242028 3242028 1 + G A rs576366177 3242014 + 3241994 3242034 41 GTTGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGT GTTGGTCTAGGGGTATGATTCTCGCTTAGGATGCAAGAGGT < 41bp 1 0.696364532079317 1 0.793106555938721 experiment 0.607270935841366 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242014 chr16:3242028 . . 0 35 hm5C_associated_SNPs_11405 0 0 1 0 0 unknown 1 0.500231643690225 0.413786888122558 0.99953671261955 hm5C_site_13560 DeepMRMD:0.413786888122558;iRNA_m5C:0.99953671261955 13561 chr16 3242028 3242028 1 + G A rs576366177 3242016 + 3241996 3242036 41 TGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCC TGGTCTAGGGGTATGATTCTCGCTTAGGATGCAAGAGGTCC < 41bp 1 0.321136870736137 1 0.17797189950943 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242016 chr16:3242028 . . 0 33 hm5C_associated_SNPs_11406 0 0 1 0 0 unknown 1 0.50023164371177 1 0.99953671257646 hm5C_site_13561 DeepMRMD:1;iRNA_m5C:0.99953671257646 13562 chr16 3242028 3242028 1 + G A rs576366177 3242018 + 3241998 3242038 41 GTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCCCG GTCTAGGGGTATGATTCTCGCTTAGGATGCAAGAGGTCCCG < 41bp 1 0.454776737825294 1 0.0641361176967621 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242018 chr16:3242028 . . 0 31 hm5C_associated_SNPs_11407 0 0 1 0 0 unknown 1 0.500231643560671 1 0.999536712878659 hm5C_site_13562 DeepMRMD:1;iRNA_m5C:0.999536712878659 13563 chr16 3242028 3242028 1 + G A rs576366177 3242036 + 3242016 3242056 41 CGCTTAGGATGCGAGAGGTCCCGGGTTCAAATCCCGGACGA CGCTTAGGATGCAAGAGGTCCCGGGTTCAAATCCCGGACGA < 41bp 1 0.654517630554158 1 0.441988170146942 experiment 0.690964738891684 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242036 chr16:3242028 . . 0 13 hm5C_associated_SNPs_11410 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13563 DeepMRMD:1;iRNA_m5C:0.999536712157815 13564 chr16 3242028 3242028 1 + G A rs576366177 3242043 + 3242023 3242063 41 GATGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTC GATGCAAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTC < 41bp 1 0.429733793515884 1 0.468274474143982 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242043 chr16:3242028 . . 0 6 hm5C_associated_SNPs_11412 0 0 1 0 0 unknown 1 0.500231643921087 1 0.999536712157826 hm5C_site_13564 DeepMRMD:1;iRNA_m5C:0.999536712157826 13565 chr16 3242034 3242034 1 + T C rs565161042 3242016 + 3241996 3242036 41 TGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCC TGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGCCC < 41bp 1 0.326902976465075 1 0.274855941534042 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242016 chr16:3242034 . . 0 39 hm5C_associated_SNPs_11414 0 0 1 0 0 unknown 1 0.500231633152772 1 0.999536733694457 hm5C_site_13565 DeepMRMD:1;iRNA_m5C:0.999536733694457 13566 chr16 3242034 3242034 1 + T C rs565161042 3242018 + 3241998 3242038 41 GTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGTCCCG GTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGCCCCG < 41bp 1 0.450037703370466 1 0.0746983289718628 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242018 chr16:3242034 . . 0 37 hm5C_associated_SNPs_11415 0 0 1 0 0 unknown 1 0.500231642566401 1 0.999536714867198 hm5C_site_13566 DeepMRMD:1;iRNA_m5C:0.999536714867198 13567 chr16 3242034 3242034 1 + T C rs565161042 3242043 + 3242023 3242063 41 GATGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTC GATGCGAGAGGCCCCGGGTTCAAATCCCGGACGAGCCCCTC < 41bp 1 0.488272358072283 1 0.54332435131073 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242043 chr16:3242034 . . 0 12 hm5C_associated_SNPs_11420 0 0 1 0 0 unknown 1 0.500231643921093 0.91335129737854 0.999536712157815 hm5C_site_13567 DeepMRMD:0.91335129737854;iRNA_m5C:0.999536712157815 13568 chr16 3242034 3242034 1 + T C rs565161042 3242050 + 3242030 3242070 41 GAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTCTTCTTAT GAGGCCCCGGGTTCAAATCCCGGACGAGCCCCTCTTCTTAT < 41bp 1 0.515416260979888 1 0.400961995124817 experiment 0.969167478040224 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242050 chr16:3242034 . . 0 5 hm5C_associated_SNPs_11422 0 0 1 0 0 unknown 1 0.500231644016368 1 0.999536711967265 hm5C_site_13568 DeepMRMD:1;iRNA_m5C:0.999536711967265 13569 chr16 3242034 3242034 1 + T C rs565161042 3242054 + 3242034 3242074 41 TCCCGGGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTT CCCCGGGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTT < 41bp 1 0.177138675234036 1 0.199241876602173 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242054 chr16:3242034 . . 0 1 hm5C_associated_SNPs_11423 0 0 1 0 0 unknown 1 0.500231643921081 1 0.999536712157838 hm5C_site_13569 DeepMRMD:1;iRNA_m5C:0.999536712157838 13570 chr16 3242049 3242049 1 + C A rs192567340 3242036 + 3242016 3242056 41 CGCTTAGGATGCGAGAGGTCCCGGGTTCAAATCCCGGACGA CGCTTAGGATGCGAGAGGTCCCGGGTTCAAATCACGGACGA < 41bp 1 0.685330586708554 1 0.527635753154755 experiment 0.629338826582891 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242036 chr16:3242049 . . 0 34 hm5C_associated_SNPs_11425 0 0 1 0 0 unknown 1 0.500231645442852 0.94472849369049 0.999536709114297 hm5C_site_13570 DeepMRMD:0.94472849369049;iRNA_m5C:0.999536709114297 13571 chr16 3242049 3242049 1 + C A rs192567340 3242043 + 3242023 3242063 41 GATGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTC GATGCGAGAGGTCCCGGGTTCAAATCACGGACGAGCCCCTC < 41bp 1 0.47436125651537 1 0.458991676568985 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242043 chr16:3242049 . . 0 27 hm5C_associated_SNPs_11426 0 0 1 0 0 unknown 1 0.500231643919377 1 0.999536712161246 hm5C_site_13571 DeepMRMD:1;iRNA_m5C:0.999536712161246 13572 chr16 3242049 3242049 1 + C A rs192567340 3242050 + 3242030 3242070 41 GAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTCTTCTTAT GAGGTCCCGGGTTCAAATCACGGACGAGCCCCTCTTCTTAT < 41bp 1 0.485194872549174 1 0.381543338298798 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242050 chr16:3242049 . . 0 20 hm5C_associated_SNPs_11427 0 0 1 0 0 unknown 1 0.500231643921412 1 0.999536712157177 hm5C_site_13572 DeepMRMD:1;iRNA_m5C:0.999536712157177 13573 chr16 3242049 3242049 1 + C A rs192567340 3242054 + 3242034 3242074 41 TCCCGGGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTT TCCCGGGTTCAAATCACGGACGAGCCCCTCTTCTTATTTTT < 41bp 1 0.193143307921339 1 0.170429766178131 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242054 chr16:3242049 . . 0 16 hm5C_associated_SNPs_11428 0 0 1 0 0 unknown 1 0.500231643940579 1 0.999536712118841 hm5C_site_13573 DeepMRMD:1;iRNA_m5C:0.999536712118841 13574 chr16 3242049 3242049 1 + C A rs192567340 3242058 + 3242038 3242078 41 GGGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTTGAGA GGGTTCAAATCACGGACGAGCCCCTCTTCTTATTTTTGAGA < 41bp 1 0.071910837387413 1 0.0506107807159424 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242058 chr16:3242049 . . 0 12 hm5C_associated_SNPs_11429 0 0 1 0 0 unknown 1 0.500231643921089 1 0.999536712157822 hm5C_site_13574 DeepMRMD:1;iRNA_m5C:0.999536712157822 13575 chr16 3242049 3242049 1 + C A rs192567340 3242059 + 3242039 3242079 41 GGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTTGAGAC GGTTCAAATCACGGACGAGCCCCTCTTCTTATTTTTGAGAC < 41bp 1 0.109535214324947 1 0.0544704794883728 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242059 chr16:3242049 . . 0 11 hm5C_associated_SNPs_11430 0 0 1 0 0 unknown 1 0.500231643920678 1 0.999536712158644 hm5C_site_13575 DeepMRMD:1;iRNA_m5C:0.999536712158644 13576 chr16 3242049 3242049 1 + C A rs192567340 3242060 + 3242040 3242080 41 GTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTTGAGACA GTTCAAATCACGGACGAGCCCCTCTTCTTATTTTTGAGACA < 41bp 1 0.0704964767829299 1 0.0432069003582001 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242060 chr16:3242049 . . 0 10 hm5C_associated_SNPs_11431 0 0 1 0 0 unknown 1 0.500231643921097 1 0.999536712157806 hm5C_site_13576 DeepMRMD:1;iRNA_m5C:0.999536712157806 13577 chr16 3242051 3242051 1 + G A rs113939832 3242043 + 3242023 3242063 41 GATGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTC GATGCGAGAGGTCCCGGGTTCAAATCCCAGACGAGCCCCTC < 41bp 1 0.410925651831034 1 0.661241769790649 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242043 chr16:3242051 . . 0 29 hm5C_associated_SNPs_11434 0 0 1 0 0 unknown 1 0.500231643921092 0.677516460418702 0.999536712157815 hm5C_site_13577 DeepMRMD:0.677516460418702;iRNA_m5C:0.999536712157815 13578 chr16 3242051 3242051 1 + G A rs113939832 3242049 + 3242029 3242069 41 AGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTCTTCTTA AGAGGTCCCGGGTTCAAATCCCAGACGAGCCCCTCTTCTTA < 41bp 1 0.597046813308974 1 0.618941366672516 experiment 0.805906373382051 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242049 chr16:3242051 . . 0 23 hm5C_associated_SNPs_11435 0 0 1 0 0 unknown 1 0.500231643921092 0.762117266654968 0.999536712157815 hm5C_site_13578 DeepMRMD:0.762117266654968;iRNA_m5C:0.999536712157815 13579 chr16 3242051 3242051 1 + G A rs113939832 3242050 + 3242030 3242070 41 GAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTCTTCTTAT GAGGTCCCGGGTTCAAATCCCAGACGAGCCCCTCTTCTTAT < 41bp 1 0.421855888389626 1 0.353192031383514 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242050 chr16:3242051 . . 0 22 hm5C_associated_SNPs_11436 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13579 DeepMRMD:1;iRNA_m5C:0.999536712157815 13580 chr16 3242051 3242051 1 + G A rs113939832 3242054 + 3242034 3242074 41 TCCCGGGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTT TCCCGGGTTCAAATCCCAGACGAGCCCCTCTTCTTATTTTT < 41bp 1 0.221093731722474 1 0.199695587158203 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242054 chr16:3242051 . . 0 18 hm5C_associated_SNPs_11437 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13580 DeepMRMD:1;iRNA_m5C:0.999536712157815 13581 chr16 3242051 3242051 1 + G A rs113939832 3242058 + 3242038 3242078 41 GGGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTTGAGA GGGTTCAAATCCCAGACGAGCCCCTCTTCTTATTTTTGAGA < 41bp 1 0.0611786044918368 1 0.026581197977066 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242058 chr16:3242051 . . 0 14 hm5C_associated_SNPs_11438 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13581 DeepMRMD:1;iRNA_m5C:0.999536712157815 13582 chr16 3242051 3242051 1 + G A rs113939832 3242059 + 3242039 3242079 41 GGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTTGAGAC GGTTCAAATCCCAGACGAGCCCCTCTTCTTATTTTTGAGAC < 41bp 1 0.0816775125339736 1 0.055140882730484 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242059 chr16:3242051 . . 0 13 hm5C_associated_SNPs_11439 0 0 1 0 0 unknown 1 0.500231643921347 1 0.999536712157307 hm5C_site_13582 DeepMRMD:1;iRNA_m5C:0.999536712157307 13583 chr16 3242051 3242051 1 + G A rs113939832 3242060 + 3242040 3242080 41 GTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTTGAGACA GTTCAAATCCCAGACGAGCCCCTCTTCTTATTTTTGAGACA < 41bp 1 0.0613294553641338 1 0.0392926037311554 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242060 chr16:3242051 . . 0 12 hm5C_associated_SNPs_11440 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13583 DeepMRMD:1;iRNA_m5C:0.999536712157815 13584 chr16 3242054 3242054 1 + C G rs570026290 3242036 + 3242016 3242056 41 CGCTTAGGATGCGAGAGGTCCCGGGTTCAAATCCCGGACGA CGCTTAGGATGCGAGAGGTCCCGGGTTCAAATCCCGGAGGA < 41bp 1 0.697023229358178 1 0.618870317935944 experiment 0.605953541283643 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242036 chr16:3242054 . . 0 39 hm5C_associated_SNPs_11442 0 0 1 0 0 unknown 1 0.500231643919979 0.762259364128112 0.999536712160041 hm5C_site_13584 DeepMRMD:0.762259364128112;iRNA_m5C:0.999536712160041 13585 chr16 3242054 3242054 1 + C G rs570026290 3242043 + 3242023 3242063 41 GATGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTC GATGCGAGAGGTCCCGGGTTCAAATCCCGGAGGAGCCCCTC < 41bp 1 0.461913055951507 1 0.570530414581299 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242043 chr16:3242054 . . 0 32 hm5C_associated_SNPs_11443 0 0 1 0 0 unknown 1 0.500231643921092 0.858939170837402 0.999536712157815 hm5C_site_13585 DeepMRMD:0.858939170837402;iRNA_m5C:0.999536712157815 13586 chr16 3242054 3242054 1 + C G rs570026290 3242058 + 3242038 3242078 41 GGGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTTGAGA GGGTTCAAATCCCGGAGGAGCCCCTCTTCTTATTTTTGAGA < 41bp 1 0.0798324891398707 1 0.0647799074649811 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242058 chr16:3242054 . . 0 17 hm5C_associated_SNPs_11445 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157817 hm5C_site_13586 DeepMRMD:1;iRNA_m5C:0.999536712157817 13587 chr16 3242054 3242054 1 + C G rs570026290 3242059 + 3242039 3242079 41 GGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTTGAGAC GGTTCAAATCCCGGAGGAGCCCCTCTTCTTATTTTTGAGAC < 41bp 1 0.130366451062135 1 0.0782904624938965 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242059 chr16:3242054 . . 0 16 hm5C_associated_SNPs_11446 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13587 DeepMRMD:1;iRNA_m5C:0.999536712157815 13588 chr16 3242054 3242054 1 + C G rs570026290 3242060 + 3242040 3242080 41 GTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTTGAGACA GTTCAAATCCCGGAGGAGCCCCTCTTCTTATTTTTGAGACA < 41bp 1 0.0752022675877303 1 0.0951448082923889 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242060 chr16:3242054 . . 0 15 hm5C_associated_SNPs_11447 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_13588 DeepMRMD:1;iRNA_m5C:0.999536712157815 13589 chr16 3242057 3242057 1 + G A rs115212815 3242043 + 3242023 3242063 41 GATGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTC GATGCGAGAGGTCCCGGGTTCAAATCCCGGACGAACCCCTC < 41bp 1 0.417045298442302 1 0.476474583148956 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242043 chr16:3242057 . . 0 35 hm5C_associated_SNPs_11448 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13589 DeepMRMD:1;iRNA_m5C:0.999536712157815 13590 chr16 3242057 3242057 1 + G A rs115212815 3242050 + 3242030 3242070 41 GAGGTCCCGGGTTCAAATCCCGGACGAGCCCCTCTTCTTAT GAGGTCCCGGGTTCAAATCCCGGACGAACCCCTCTTCTTAT < 41bp 1 0.471174466446033 1 0.464854866266251 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242050 chr16:3242057 . . 0 28 hm5C_associated_SNPs_11450 0 0 1 0 0 unknown 1 0.500231600190773 1 0.999536799618454 hm5C_site_13590 DeepMRMD:1;iRNA_m5C:0.999536799618454 13591 chr16 3242057 3242057 1 + G A rs115212815 3242054 + 3242034 3242074 41 TCCCGGGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTT TCCCGGGTTCAAATCCCGGACGAACCCCTCTTCTTATTTTT < 41bp 1 0.0694428197619334 1 0.0720346570014954 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242054 chr16:3242057 . . 0 24 hm5C_associated_SNPs_11451 0 0 1 0 0 unknown 1 0.500231643921085 1 0.999536712157831 hm5C_site_13591 DeepMRMD:1;iRNA_m5C:0.999536712157831 13592 chr16 3242057 3242057 1 + G A rs115212815 3242058 + 3242038 3242078 41 GGGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTTGAGA GGGTTCAAATCCCGGACGAACCCCTCTTCTTATTTTTGAGA < 41bp 1 0.0851600689177248 1 0.0499864518642426 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242058 chr16:3242057 . . 0 20 hm5C_associated_SNPs_11452 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_13592 DeepMRMD:1;iRNA_m5C:0.999536712157816 13593 chr16 3242057 3242057 1 + G A rs115212815 3242059 + 3242039 3242079 41 GGTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTTGAGAC GGTTCAAATCCCGGACGAACCCCTCTTCTTATTTTTGAGAC < 41bp 1 0.139788831266465 1 0.143011450767517 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242059 chr16:3242057 . . 0 19 hm5C_associated_SNPs_11453 0 0 1 0 0 unknown 1 0.500231643921088 1 0.999536712157823 hm5C_site_13593 DeepMRMD:1;iRNA_m5C:0.999536712157823 13594 chr16 3242057 3242057 1 + G A rs115212815 3242060 + 3242040 3242080 41 GTTCAAATCCCGGACGAGCCCCTCTTCTTATTTTTGAGACA GTTCAAATCCCGGACGAACCCCTCTTCTTATTTTTGAGACA < 41bp 1 0.0997464364920755 1 0.111063241958618 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target CASP16P;OR1F1 ENSG00000262668 ncRNA_intronic Human antisense chr16:3242060 chr16:3242057 . . 0 18 hm5C_associated_SNPs_11454 0 0 1 0 0 unknown 1 0.500231643921109 1 0.999536712157782 hm5C_site_13594 DeepMRMD:1;iRNA_m5C:0.999536712157782 13595 chr16 3358419 3358419 1 + C G rs553304424 3358410 + 3358390 3358430 41 TGGGTGTCTTAACACAGGAGCAGAACTTCCTAGAGCAGAAT TGGGTGTCTTAACACAGGAGCAGAACTTCGTAGAGCAGAAT < 41bp 1 0.254806266948084 1 0.425672262907028 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF75A ENSG00000162086 intronic Human protein_coding chr16:3358410 chr16:3358419 . . 0 30 hm5C_associated_SNPs_11457 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_13595 DeepMRMD:1;iRNA_m5C:0.999536712157812 13596 chr16 3536718 3536718 1 + G A rs181363345 3536723 + 3536703 3536743 41 GGCTGCCTGCCTGCCGGGCCCAGCTCAGCGCCCTCTCCACT GGCTGCCTGCCTGCCAGGCCCAGCTCAGCGCCCTCTCCACT < 41bp 1 0.623959309360481 1 0.0336658656597137 experiment 0.752081381279038 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA60 ENSG00000263212 ncRNA_intronic Human processed_transcript chr16:3536723 chr16:3536718 . . 0 16 hm5C_associated_SNPs_11458 0 0 1 0 0 chromatin 1 0.500231643921185 1 0.999536712157631 hm5C_site_13596 DeepMRMD:1;iRNA_m5C:0.999536712157631 13597 chr16 3536729 3536729 1 + A T rs146006482 3536723 + 3536703 3536743 41 GGCTGCCTGCCTGCCGGGCCCAGCTCAGCGCCCTCTCCACT GGCTGCCTGCCTGCCGGGCCCAGCTCTGCGCCCTCTCCACT < 41bp 1 0.660969684927259 1 0.0291978418827057 experiment 0.678060630145481 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA60 ENSG00000263212 ncRNA_intronic Human processed_transcript chr16:3536723 chr16:3536729 . . 0 27 hm5C_associated_SNPs_11459 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13597 DeepMRMD:1;iRNA_m5C:0.999536712157815 13598 chr16 3707257 3707257 1 + C A rs148373909 3707253 + 3707233 3707273 41 AGACCCTCCCAGTGGTCATCCATCCGCCTGTGGACAAGCCC AGACCCTCCCAGTGGTCATCCATCAGCCTGTGGACAAGCCC < 41bp 1 0.503594809690394 1 0.0612652003765106 experiment 0.992810380619213 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707253 chr16:3707257 nonsynonymous SNV 0.396 4 25 hm5C_associated_SNPs_11460 0 0 1 0 2 Cytosol 1 0.500231643934028 1 0.999536712131944 hm5C_site_13598 DeepMRMD:1;iRNA_m5C:0.999536712131944 13599 chr16 3707262 3707262 1 + G A rs8176920 3707253 + 3707233 3707273 41 AGACCCTCCCAGTGGTCATCCATCCGCCTGTGGACAAGCCC AGACCCTCCCAGTGGTCATCCATCCGCCTATGGACAAGCCC < 41bp 1 0.149521018042497 1 0.114675521850586 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707253 chr16:3707262 synonymous SNV . 0 30 hm5C_associated_SNPs_11461 0 0 1 0 2 Cytosol 1 0.500231643913 1 0.999536712174 hm5C_site_13599 DeepMRMD:1;iRNA_m5C:0.999536712174 13600 chr16 3707747 3707747 1 + G A rs1053874 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CAAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.599271638209878 1 0.453109264373779 experiment 0.801456723580243 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707747 nonsynonymous SNV 0.014 0 2 hm5C_associated_SNPs_11462 1 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13600 DeepMRMD:1;iRNA_m5C:0.999536712157815 Systemic lupus erythematosus, susceptibility to Systemic lupus erythematosus, susceptibility to 13601 chr16 4388399 4388399 1 + C G rs147214646 4388413 + 4388393 4388433 41 CTCCTTCTACCCCCGCTGGGCCTGGCCTGGGCAGCGCCCCC CTCCTTGTACCCCCGCTGGGCCTGGCCTGGGCAGCGCCCCC < 41bp 1 0.229187571237373 1 0.0496428906917572 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control GLIS2 ENSG00000126603 UTR3 Human protein_coding chr16:4388413 chr16:4388399 . . 0 7 hm5C_associated_SNPs_11464 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643923596 1 0.999536712152808 hm5C_site_13601 DeepMRMD:1;iRNA_m5C:0.999536712152808 13602 chr16 4388399 4388399 1 + C G rs147214646 4388414 + 4388394 4388434 41 TCCTTCTACCCCCGCTGGGCCTGGCCTGGGCAGCGCCCCCT TCCTTGTACCCCCGCTGGGCCTGGCCTGGGCAGCGCCCCCT < 41bp 1 0.591736298322748 1 0.0369236171245575 experiment 0.816527403354503 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control GLIS2 ENSG00000126603 UTR3 Human protein_coding chr16:4388414 chr16:4388399 . . 0 6 hm5C_associated_SNPs_11465 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643914831 1 0.999536712170339 hm5C_site_13602 DeepMRMD:1;iRNA_m5C:0.999536712170339 13603 chr16 4388399 4388399 1 + C G rs147214646 4388418 + 4388398 4388438 41 TCTACCCCCGCTGGGCCTGGCCTGGGCAGCGCCCCCTGCAG TGTACCCCCGCTGGGCCTGGCCTGGGCAGCGCCCCCTGCAG < 41bp 1 0.483500604238144 1 0.327621281147003 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GLIS2 ENSG00000126603 UTR3 Human protein_coding chr16:4388418 chr16:4388399 . . 0 2 hm5C_associated_SNPs_11466 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_13603 DeepMRMD:1;iRNA_m5C:0.999536712157818 13604 chr16 4388441 4388441 1 + G A rs72766567 4388427 + 4388407 4388447 41 GCTGGGCCTGGCCTGGGCAGCGCCCCCTGCAGAGGCCTTTG GCTGGGCCTGGCCTGGGCAGCGCCCCCTGCAGAGACCTTTG < 41bp 1 0.542114297662164 1 0.421105116605759 experiment 0.915771404675672 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GLIS2 ENSG00000126603 UTR3 Human protein_coding chr16:4388427 chr16:4388441 . . 0 35 hm5C_associated_SNPs_11467 1 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_13604 DeepMRMD:1;iRNA_m5C:0.999536712157815 Nephronophthisis Nephronophthisis 13605 chr16 4431026 4431026 1 + G A rs140274177 4431033 + 4431013 4431053 41 GGTGCCCCGAGACGTGCCACCCGACACGGTGGGGCTGTACG GGTGCCCCGAGACATGCCACCCGACACGGTGGGGCTGTACG < 41bp 1 0.0953071620042424 1 0.0655133128166199 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control VASN ENSG00000168140 CDS Human protein_coding chr16:4431033 chr16:4431026 nonsynonymous SNV 0.210 3 14 hm5C_associated_SNPs_11468 0 0 1 0 0 nucleus 1 0.500232423668958 1 0.999535152662084 hm5C_site_13605 DeepMRMD:1;iRNA_m5C:0.999535152662084 13606 chr16 4431767 4431767 1 + C T rs148092711 4431752 + 4431732 4431772 41 GCCTCTTCCCCCGCCTGCGGCTGCTGGCAGCTGCCCGCAAC GCCTCTTCCCCCGCCTGCGGCTGCTGGCAGCTGCCTGCAAC < 41bp 1 0.502522478465291 1 0.0682945251464844 experiment 0.994955043069417 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VASN ENSG00000168140 CDS Human protein_coding chr16:4431752 chr16:4431767 nonsynonymous SNV 0.995 2 36 hm5C_associated_SNPs_11469 0 1 1 0 0 nucleus 1 0.500231646682949 1 0.999536706634102 hm5C_site_13606 DeepMRMD:1;iRNA_m5C:0.999536706634102 13607 chr16 4476089 4476089 1 + T C rs1139652 4476087 + 4476067 4476107 41 CATTGAGACCTGGTGTCAGCCTTACAGGTGAGGGCAGGTTC CATTGAGACCTGGTGTCAGCCTCACAGGTGAGGGCAGGTTC < 41bp 1 0.462460448631836 1 0.513574421405792 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DNAJA3 ENSG00000103423 CDS Human protein_coding chr16:4476087 chr16:4476089 nonsynonymous SNV 0.896 1 23 hm5C_associated_SNPs_11470 0 1 1 0 1 Ribosome 1 0.500230229543674 0.972851157188416 0.999539540912652 hm5C_site_13607 DeepMRMD:0.972851157188416;iRNA_m5C:0.999539540912652 13608 chr16 4505882 4505882 1 + G A rs181511744 4505871 + 4505851 4505891 41 GAATTGAATATTGTGGATATCTTAGTTAAAGGCCATGCTTA GAATTGAATATTGTGGATATCTTAGTTAAAGACCATGCTTA < 41bp 1 0.362874308618818 1 0.0466935038566589 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNAJA3 ENSG00000103423 UTR3 Human protein_coding chr16:4505871 chr16:4505882 . . 0 32 hm5C_associated_SNPs_11472 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13608 DeepMRMD:1;iRNA_m5C:0.999536712157815 13609 chr16 4506035 4506035 1 + C T rs113445412 4506025 + 4506005 4506045 41 GGAGCGTGGGGCCCCCAGGCCCCACCAGCACCGTCCTCCCC GGAGCGTGGGGCCCCCAGGCCCCACCAGCATCGTCCTCCCC < 41bp 1 0.212267085521618 1 0.0456321537494659 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNAJA3 ENSG00000103423 UTR3 Human protein_coding chr16:4506025 chr16:4506035 . . 0 31 hm5C_associated_SNPs_11474 0 0 0 0 0 Ribosome 1 0.500231643917325 1 0.999536712165351 hm5C_site_13609 DeepMRMD:1;iRNA_m5C:0.999536712165351 13610 chr16 4506035 4506035 1 + C T rs113445412 4506026 + 4506006 4506046 41 GAGCGTGGGGCCCCCAGGCCCCACCAGCACCGTCCTCCCCT GAGCGTGGGGCCCCCAGGCCCCACCAGCATCGTCCTCCCCT < 41bp 1 0.332318565335887 1 0.0213127434253693 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNAJA3 ENSG00000103423 UTR3 Human protein_coding chr16:4506026 chr16:4506035 . . 0 30 hm5C_associated_SNPs_11475 0 0 0 0 0 Ribosome 1 0.500231644244552 1 0.999536711510896 hm5C_site_13610 DeepMRMD:1;iRNA_m5C:0.999536711510896 13611 chr16 4552920 4552920 1 + C A rs551921972 4552928 + 4552908 4552948 41 CCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAG CCCAGGTTCAAGAGATTCTCCTGCCTCAGCCTCCTGAGTAG < 41bp 1 0.410867291256753 1 0.0706405937671661 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMOX2 ENSG00000103415 UTR5 Human protein_coding chr16:4552928 chr16:4552920 . . 0 13 hm5C_associated_SNPs_11478 0 0 0 0 1 Cytosol 1 0.500231643825078 1 0.999536712349845 hm5C_site_13611 DeepMRMD:1;iRNA_m5C:0.999536712349845 13612 chr16 4552920 4552920 1 + C A rs551921972 4552931 + 4552911 4552951 41 AGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTG AGGTTCAAGAGATTCTCCTGCCTCAGCCTCCTGAGTAGCTG < 41bp 1 0.255056872236016 1 0.0399261713027954 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMOX2 ENSG00000103415 UTR5 Human protein_coding chr16:4552931 chr16:4552920 . . 0 10 hm5C_associated_SNPs_11479 0 0 0 0 1 Cytosol 1 0.500231643920577 1 0.999536712158845 hm5C_site_13612 DeepMRMD:1;iRNA_m5C:0.999536712158845 13613 chr16 4784432 4784432 1 + T C rs181923974 4784450 + 4784430 4784470 41 TGTCCTGCTCCGTCCCCGCCCTCCAGGGGAACCAATCCCAT TGCCCTGCTCCGTCCCCGCCCTCCAGGGGAACCAATCCCAT < 41bp 1 0.649348456667289 1 0.876064777374268 experiment 0.701303086665422 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control C16orf71 ENSG00000266994 ncRNA_intronic Human processed_transcript chr16:4784450 chr16:4784432 . . 0 3 hm5C_associated_SNPs_11480 0 0 0 0 0 exosome 1 0.500231643921093 0.247870445251464 0.999536712157815 hm5C_site_13613 DeepMRMD:0.247870445251464;iRNA_m5C:0.999536712157815 13614 chr16 4902939 4902939 1 + C G rs144891449 4902930 + 4902910 4902950 41 TTGGTAGCCATGTCGGAGCCCCACAGGGTCCAGTTCACCTC TTGGTAGCCATGTCGGAGCCCCACAGGGTGCAGTTCACCTC < 41bp 1 0.348096002386722 1 0.187075585126877 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN1 ENSG00000118900 CDS Human protein_coding chr16:4902930 chr16:4902939 synonymous SNV . 0 30 hm5C_associated_SNPs_11481 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_13614 DeepMRMD:1;iRNA_m5C:0.999536712157814 13615 chr16 5123251 5123251 1 + T C rs140626461 5123234 + 5123214 5123254 41 GGAAGTTGATGTGGAGGGAGCCAGGTGCCTATATCTTTCTC GGAAGTTGATGTGGAGGGAGCCAGGTGCCTATATCTTCCTC < 41bp 1 0.427709031557209 1 0.659464955329895 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5123234 chr16:5123251 synonymous SNV . 0 38 hm5C_associated_SNPs_11482 0 0 1 0 2 Ribosome 1 0.500231643921092 0.68107008934021 0.999536712157815 hm5C_site_13615 DeepMRMD:0.68107008934021;iRNA_m5C:0.999536712157815 13616 chr16 8722776 8722776 1 + G T rs199694343 8722770 + 8722750 8722790 41 CCTCCAGGCCGGGACTGACACCACTGGCCAGGAAGTGGCTG CCTCCAGGCCGGGACTGACACCACTGTCCAGGAAGTGGCTG < 41bp 1 0.323713832095068 1 0.0266492068767548 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8722770 chr16:8722776 nonsynonymous SNV 0.002 0 27 hm5C_associated_SNPs_11483 0 0 1 0 0 Cytosol 1 0.500231646748117 1 0.999536706503765 hm5C_site_13616 DeepMRMD:1;iRNA_m5C:0.999536706503765 13617 chr16 8877832 8877832 1 + C T rs8275 8877842 + 8877822 8877862 41 GAGACATGCTCTTTTGGGGGCTGGGGCTTTAGCTAGAAGAA GAGACATGCTTTTTTGGGGGCTGGGGCTTTAGCTAGAAGAA < 41bp 1 0.623828323666096 1 0.458969235420227 experiment 0.752343352667808 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABAT ENSG00000183044 UTR3 Human protein_coding chr16:8877842 chr16:8877832 . . 0 11 hm5C_associated_SNPs_11484 1 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13617 DeepMRMD:1;iRNA_m5C:0.999536712157815 Gamma-aminobutyric acid transaminase deficiency Gamma-aminobutyric acid transaminase deficiency 13618 chr16 8877854 8877854 1 + C G rs12597124 8877842 + 8877822 8877862 41 GAGACATGCTCTTTTGGGGGCTGGGGCTTTAGCTAGAAGAA GAGACATGCTCTTTTGGGGGCTGGGGCTTTAGGTAGAAGAA < 41bp 1 0.634838489655558 1 0.450210452079773 experiment 0.730323020688884 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABAT ENSG00000183044 UTR3 Human protein_coding chr16:8877842 chr16:8877854 . . 0 33 hm5C_associated_SNPs_11485 1 0 0 0 0 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_13618 DeepMRMD:1;iRNA_m5C:0.999536712157815 Gamma-aminobutyric acid transaminase deficiency Gamma-aminobutyric acid transaminase deficiency 13619 chr16 11133681 11133681 1 + C T rs61740118 11133688 + 11133668 11133708 41 AGACCACCTACAACCACCCGCTAGCTGAAAGACTCATCAGG AGACCACCTACAATCACCCGCTAGCTGAAAGACTCATCAGG < 41bp 1 0.106267467402251 1 0.16377854347229 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133688 chr16:11133681 synonymous SNV . 0 14 hm5C_associated_SNPs_11486 0 0 1 0 2 Cytosol 1 0.500233286535669 1 0.999533426928662 hm5C_site_13619 DeepMRMD:1;iRNA_m5C:0.999533426928662 13620 chr16 11274904 11274904 1 + G A rs199503706 11274886 + 11274866 11274906 41 GGGGCCTCTTTCAGCTGGGGCTGGCAACTTGCGTCTGGGGG GGGGCCTCTTTCAGCTGGGGCTGGCAACTTGCGTCTGGAGG < 41bp 1 0.25580975861959 1 0.125145941972733 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLEC16A ENSG00000038532 UTR3 Human protein_coding chr16:11274886 chr16:11274904 . . 0 39 hm5C_associated_SNPs_11487 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_13620 DeepMRMD:1;iRNA_m5C:0.999536712157815 13621 chr16 11275105 11275105 1 + G A rs117626075 11275114 + 11275094 11275134 41 ATAGCTGGGGCGCTCCCAGACAGGCCAGTCCAGACAGGACA ATAGCTGGGGCACTCCCAGACAGGCCAGTCCAGACAGGACA < 41bp 1 0.513110573338232 1 0.572963654994965 experiment 0.973778853323535 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLEC16A ENSG00000038532 UTR3 Human protein_coding chr16:11275114 chr16:11275105 . . 0 12 hm5C_associated_SNPs_11488 0 0 0 0 0 Cytosol 1 0.500231643921083 0.85407269001007 0.999536712157835 hm5C_site_13621 DeepMRMD:0.85407269001007;iRNA_m5C:0.999536712157835 13622 chr16 11275128 11275128 1 + C T rs45487900 11275114 + 11275094 11275134 41 ATAGCTGGGGCGCTCCCAGACAGGCCAGTCCAGACAGGACA ATAGCTGGGGCGCTCCCAGACAGGCCAGTCCAGATAGGACA < 41bp 1 0.540731367093718 1 0.301546633243561 experiment 0.918537265812564 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLEC16A ENSG00000038532 UTR3 Human protein_coding chr16:11275114 chr16:11275128 . . 0 35 hm5C_associated_SNPs_11489 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_13622 DeepMRMD:1;iRNA_m5C:0.999536712157816 13623 chr16 12662420 12662420 1 + C A rs2288423 12662431 + 12662411 12662451 41 TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA TTCCCGCTTACCCAAACTGTCCCGGGGTCAGCCCCGGGAGA < 41bp 1 0.299233359054588 1 0.41114616394043 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662431 chr16:12662420 nonsynonymous SNV 0.992 2 10 hm5C_associated_SNPs_11490 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_13623 DeepMRMD:1;iRNA_m5C:0.999536712157815 13624 chr16 12662420 12662420 1 + C A rs2288423 12662432 + 12662412 12662452 41 TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC TCCCGCTTACCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC < 41bp 1 0.34862969434301 1 0.405083924531937 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662432 chr16:12662420 nonsynonymous SNV 0.992 2 9 hm5C_associated_SNPs_11491 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_13624 DeepMRMD:1;iRNA_m5C:0.999536712157815 13625 chr16 12662420 12662420 1 + C A rs2288423 12662433 + 12662413 12662453 41 CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC CCCGCTTACCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC < 41bp 1 0.472011982389656 1 0.889782607555389 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662433 chr16:12662420 nonsynonymous SNV 0.992 2 8 hm5C_associated_SNPs_11492 0 0 0 0 1 Nucleus 1 0.500231643921092 0.220434784889222 0.999536712157815 hm5C_site_13625 DeepMRMD:0.220434784889222;iRNA_m5C:0.999536712157815 13626 chr16 12662448 12662448 1 + G A rs143372184 12662431 + 12662411 12662451 41 TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGAAGA < 41bp 1 0.331272264919906 1 0.544626235961914 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662431 chr16:12662448 nonsynonymous SNV 0.394 2 38 hm5C_associated_SNPs_11493 0 0 0 0 1 Nucleus 1 0.500231643921092 0.910747528076172 0.999536712157815 hm5C_site_13626 DeepMRMD:0.910747528076172;iRNA_m5C:0.999536712157815 13627 chr16 12662448 12662448 1 + G A rs143372184 12662432 + 12662412 12662452 41 TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGAAGAC < 41bp 1 0.329551254655866 1 0.710704147815704 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662432 chr16:12662448 nonsynonymous SNV 0.394 2 37 hm5C_associated_SNPs_11494 0 0 0 0 1 Nucleus 1 0.500231643921092 0.578591704368592 0.999536712157815 hm5C_site_13627 DeepMRMD:0.578591704368592;iRNA_m5C:0.999536712157815 13628 chr16 12662448 12662448 1 + G A rs143372184 12662433 + 12662413 12662453 41 CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGAAGACC < 41bp 1 0.415228925151851 1 0.886863946914673 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662433 chr16:12662448 nonsynonymous SNV 0.394 2 36 hm5C_associated_SNPs_11495 0 0 0 0 1 Nucleus 1 0.500231643921092 0.226272106170654 0.999536712157815 hm5C_site_13628 DeepMRMD:0.226272106170654;iRNA_m5C:0.999536712157815 13629 chr16 12662448 12662448 1 + G A rs143372184 12662443 + 12662423 12662463 41 CAAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGG CAAACTGTCCCGGGGTCAGCCCCGGAAGACCCGCAACGTGG < 41bp 1 0.297931071367424 1 0.503393888473511 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662443 chr16:12662448 nonsynonymous SNV 0.394 2 26 hm5C_associated_SNPs_11496 0 0 0 0 1 Nucleus 1 0.500231643920949 0.993212223052978 0.999536712158101 hm5C_site_13629 DeepMRMD:0.993212223052978;iRNA_m5C:0.999536712158101 13630 chr16 12662448 12662448 1 + G A rs143372184 12662444 + 12662424 12662464 41 AAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGA AAACTGTCCCGGGGTCAGCCCCGGAAGACCCGCAACGTGGA < 41bp 1 0.291904431921449 1 0.827396035194397 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662444 chr16:12662448 nonsynonymous SNV 0.394 2 25 hm5C_associated_SNPs_11497 0 0 0 0 1 Nucleus 1 0.500231643921092 0.345207929611206 0.999536712157815 hm5C_site_13630 DeepMRMD:0.345207929611206;iRNA_m5C:0.999536712157815 13631 chr16 12662448 12662448 1 + G A rs143372184 12662445 + 12662425 12662465 41 AACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGAG AACTGTCCCGGGGTCAGCCCCGGAAGACCCGCAACGTGGAG < 41bp 1 0.476134817407285 1 0.744466543197632 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662445 chr16:12662448 nonsynonymous SNV 0.394 2 24 hm5C_associated_SNPs_11498 0 0 0 0 1 Nucleus 1 0.500231643921091 0.511066913604736 0.999536712157818 hm5C_site_13631 DeepMRMD:0.511066913604736;iRNA_m5C:0.999536712157818 13632 chr16 14038659 14038659 1 + T C rs2020955 14038675 + 14038655 14038695 41 AGCATCTGCAGATGTTTCCACTGACACTCGGAAAGCCGGTG AGCACCTGCAGATGTTTCCACTGACACTCGGAAAGCCGGTG < 41bp 1 0.239393174512181 1 0.146419376134872 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14038675 chr16:14038659 nonsynonymous SNV 0.001 0 5 hm5C_associated_SNPs_11499 5 0 0 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_13632 DeepMRMD:1;iRNA_m5C:0.999536712157814 not specified not specified 13633 chr16 14234431 14234431 1 + C G rs61744189 14234439 + 14234419 14234459 41 TTTAAGAGGCGTCTTACACTCCCTGTTGCCAGTGGCTGGAA TTTAAGAGGCGTGTTACACTCCCTGTTGCCAGTGGCTGGAA < 41bp 1 0.38216711837233 1 0.0862652361392975 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MKL2 ENSG00000186260 UTR5 Human protein_coding chr16:14234439 chr16:14234431 . . 0 13 hm5C_associated_SNPs_11500 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13633 DeepMRMD:1;iRNA_m5C:0.999536712157815 13634 chr16 14379814 14379814 1 + C G rs186671982 14379804 + 14379784 14379824 41 TAAACCGAAGATCACGGGTTCGAACCCCGTCCGTGCCTGAT TAAACCGAAGATCACGGGTTCGAACCCCGTGCGTGCCTGAT < 41bp 1 0.118507007920348 1 0.170836627483368 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MKL2;MIR193BHG ENSG00000201075;ENSG00000262454 intergenic Human other chr16:14379804 chr16:14379814 . . 0 31 hm5C_associated_SNPs_11501 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_13634 DeepMRMD:1;iRNA_m5C:0.999536712157815 13635 chr16 14379814 14379814 1 + C G rs186671982 14379809 + 14379789 14379829 41 CGAAGATCACGGGTTCGAACCCCGTCCGTGCCTGATATCCA CGAAGATCACGGGTTCGAACCCCGTGCGTGCCTGATATCCA < 41bp 1 0.27672787391449 1 0.475039303302765 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MKL2;MIR193BHG ENSG00000201075;ENSG00000262454 intergenic Human other chr16:14379809 chr16:14379814 . . 0 26 hm5C_associated_SNPs_11502 0 0 1 0 0 unknown 1 0.500231634997963 1 0.999536730004074 hm5C_site_13635 DeepMRMD:1;iRNA_m5C:0.999536730004074 13636 chr16 14379814 14379814 1 + C G rs186671982 14379815 + 14379795 14379835 41 TCACGGGTTCGAACCCCGTCCGTGCCTGATATCCAACCTTC TCACGGGTTCGAACCCCGTGCGTGCCTGATATCCAACCTTC < 41bp 1 0.224088754796686 1 0.0401533544063568 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MKL2;MIR193BHG ENSG00000201075;ENSG00000262454 intergenic Human other chr16:14379815 chr16:14379814 . . 0 20 hm5C_associated_SNPs_11503 0 0 1 0 0 unknown 1 0.500231943932781 1 0.999536112134438 hm5C_site_13636 DeepMRMD:1;iRNA_m5C:0.999536112134438 13637 chr16 14726833 14726833 1 + G A rs563033863 14726831 + 14726811 14726851 41 TTCCTCTGCTCCCGCGGGGTCTGTGCTGAGAATAATGGCCC TTCCTCTGCTCCCGCGGGGTCTATGCTGAGAATAATGGCCC < 41bp 1 0.390537921440855 1 0.147723942995071 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BFAR ENSG00000103429 UTR5 Human protein_coding chr16:14726831 chr16:14726833 . . 0 23 hm5C_associated_SNPs_11504 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13637 DeepMRMD:1;iRNA_m5C:0.999536712157815 13638 chr16 14972674 14972674 1 + C T rs541333077 14972678 + 14972658 14972698 41 CCAGGACAACGGCATTCTGACATTCTCAAACCTGGTAACGT CCAGGACAACGGCATTTTGACATTCTCAAACCTGGTAACGT < 41bp 1 0.0615791985877657 1 0.0137066543102264 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972678 chr16:14972674 synonymous SNV . 0 17 hm5C_associated_SNPs_11505 0 0 0 0 2 Nucleus 1 0.50023164392108 1 0.999536712157841 hm5C_site_13638 DeepMRMD:1;iRNA_m5C:0.999536712157841 13639 chr16 14972674 14972674 1 + C T rs541333077 14972682 + 14972662 14972702 41 GACAACGGCATTCTGACATTCTCAAACCTGGTAACGTGTTC GACAACGGCATTTTGACATTCTCAAACCTGGTAACGTGTTC < 41bp 1 0.569566642033296 1 0.866151809692383 experiment 0.860866715933407 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972682 chr16:14972674 synonymous SNV . 0 13 hm5C_associated_SNPs_11506 0 0 0 0 2 Nucleus 1 0.500231643916142 0.267696380615234 0.999536712167715 hm5C_site_13639 DeepMRMD:0.267696380615234;iRNA_m5C:0.999536712167715 13640 chr16 15503089 15503089 1 + C A rs576330877 15503093 + 15503073 15503113 41 GGATTACAGGCAGGTGCCACCATGCCTGGCTCATTTTTGTA GGATTACAGGCAGGTGACACCATGCCTGGCTCATTTTTGTA < 41bp 1 0.363210546186362 1 0.225329846143723 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPV17L ENSG00000156968 UTR3 Human protein_coding chr16:15503093 chr16:15503089 . . 0 17 hm5C_associated_SNPs_11507 0 0 0 1 0 Nucleus 1 0.500231646881845 1 0.999536706236311 hm5C_site_13640 DeepMRMD:1;iRNA_m5C:0.999536706236311 13641 chr16 15788041 15788041 1 + G T rs570994490 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGTGGGACCCCCCTCACACCTGCGGCCCG < 41bp 1 0.182133652490339 1 0.0634188055992126 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788041 synonymous SNV . 0 15 hm5C_associated_SNPs_11508 1 0 1 0 2 chromatin 1 0.50023165205588 1 0.99953669588824 hm5C_site_13641 DeepMRMD:1;iRNA_m5C:0.99953669588824 not specified not specified 13642 chr16 15788062 15788062 1 + G A rs1123418 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGGACCCCCCTCACACCTGCAGCCCG < 41bp 1 0.170271322158392 1 0.103989154100418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788062 synonymous SNV . 0 36 hm5C_associated_SNPs_11509 2 0 1 0 2 chromatin 1 0.500231643958984 1 0.999536712082032 hm5C_site_13642 DeepMRMD:1;iRNA_m5C:0.999536712082032 Lissencephaly 4 Lissencephaly 4 13643 chr16 16101842 16101842 1 + C T rs41494447 16101834 + 16101814 16101854 41 TACATTCAGATGACACCTCTCAACAAAACCAAAACTGTAAG TACATTCAGATGACACCTCTCAACAAAATCAAAACTGTAAG < 41bp 1 0.456091323879215 1 0.453556925058365 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16101834 chr16:16101842 nonsynonymous SNV 0.996 0 29 hm5C_associated_SNPs_11512 0 0 1 0 1 Mitochondrion 1 0.500231645592821 1 0.999536708814357 hm5C_site_13643 DeepMRMD:1;iRNA_m5C:0.999536708814357 13644 chr16 16236004 16236004 1 + T A rs212090 16236001 + 16235981 16236021 41 AACAATCAATGCTGTTATTACTGTTCCCACCATGATTGATG AACAATCAATGCTGTTATTACTGATCCCACCATGATTGATG < 41bp 1 0.11728493020634 1 0.167732983827591 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCC1 ENSG00000103222 UTR3 Human protein_coding chr16:16236001 chr16:16236004 . . 0 24 hm5C_associated_SNPs_11513 0 0 1 1 0 Mitochondrion 1 0.500231644327241 1 0.999536711345518 hm5C_site_13644 DeepMRMD:1;iRNA_m5C:0.999536711345518 13645 chr16 16236021 16236021 1 + G A rs113264879 16236001 + 16235981 16236021 41 AACAATCAATGCTGTTATTACTGTTCCCACCATGATTGATG AACAATCAATGCTGTTATTACTGTTCCCACCATGATTGATA < 41bp 1 0.0734055129151618 1 0.089742124080658 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCC1 ENSG00000103222 UTR3 Human protein_coding chr16:16236001 chr16:16236021 . . 0 41 hm5C_associated_SNPs_11514 0 0 1 0 0 Mitochondrion 1 0.500231648917521 1 0.999536702164958 hm5C_site_13645 DeepMRMD:1;iRNA_m5C:0.999536702164958 13646 chr16 16236138 16236138 1 + G A rs147785655 16236118 + 16236098 16236138 41 CTGGAAGGTACTATGCCAGTCCTAGCAGAAAAATGTGTTAG CTGGAAGGTACTATGCCAGTCCTAGCAGAAAAATGTGTTAA < 41bp 1 0.0576030569289318 1 0.133973628282547 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABCC1 ENSG00000103222 UTR3 Human protein_coding chr16:16236118 chr16:16236138 . . 0 41 hm5C_associated_SNPs_11515 0 0 0 0 0 Mitochondrion 1 0.500231645877642 1 0.999536708244717 hm5C_site_13646 DeepMRMD:1;iRNA_m5C:0.999536708244717 13647 chr16 16425513 16425513 1 + G T rs208656 16425501 + 16425481 16425521 41 ATCTGGCTCTCCATATGGGACCGGCCGCCTCGGAGCTGTTT ATCTGGCTCTCCATATGGGACCGGCCGCCTCGTAGCTGTTT < 41bp 1 0.0897215592875901 1 0.0741562247276306 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKD1P1 ENSG00000244257 ncRNA_exonic Human unprocessed_pseudogene chr16:16425501 chr16:16425513 . . 0 33 hm5C_associated_SNPs_11516 0 0 1 0 0 unknown 1 0.500231643925579 1 0.999536712148843 hm5C_site_13647 DeepMRMD:1;iRNA_m5C:0.999536712148843 13648 chr16 16425513 16425513 1 + G T rs208656 16425509 + 16425489 16425529 41 CTCCATATGGGACCGGCCGCCTCGGAGCTGTTTCACTCGCA CTCCATATGGGACCGGCCGCCTCGTAGCTGTTTCACTCGCA < 41bp 1 0.343200880292911 1 0.531558036804199 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKD1P1 ENSG00000244257 ncRNA_exonic Human unprocessed_pseudogene chr16:16425509 chr16:16425513 . . 0 25 hm5C_associated_SNPs_11517 0 0 1 0 0 unknown 1 0.500231643921092 0.936883926391602 0.999536712157815 hm5C_site_13648 DeepMRMD:0.936883926391602;iRNA_m5C:0.999536712157815 13649 chr16 16465466 16465466 1 + C G rs557228510 16465451 + 16465431 16465471 41 GCCTCCGTCGGTGCTGTGGTCACCCTGGACAGCAGCAACCC GCCTCCGTCGGTGCTGTGGTCACCCTGGACAGCAGGAACCC < 41bp 1 0.469467919633011 1 0.0691286027431488 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PKD1P4-NPIPA8 ENSG00000227827 ncRNA_exonic Human unprocessed_pseudogene chr16:16465451 chr16:16465466 . . 0 36 hm5C_associated_SNPs_11518 0 0 1 0 1 unknown 1 0.50023164392196 1 0.999536712156081 hm5C_site_13649 DeepMRMD:1;iRNA_m5C:0.999536712156081 13650 chr16 19129660 19129660 1 + G A rs554967254 19129655 + 19129635 19129675 41 AAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAATCCCAGAT AAATTAGCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGAT < 41bp 1 0.579814522181681 1 0.879181623458862 experiment 0.840370955636638 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ITPRIPL2 ENSG00000205730 UTR3 Human protein_coding chr16:19129655 chr16:19129660 . . 0 26 hm5C_associated_SNPs_11519 0 0 0 0 0 Ribosome 1 0.500231643925623 0.241636753082276 0.999536712148753 hm5C_site_13650 DeepMRMD:0.241636753082276;iRNA_m5C:0.999536712148753 13651 chr16 19129660 19129660 1 + G A rs554967254 19129659 + 19129639 19129679 41 TAGCTGGGCGTGGTGGCGGGCGCCTGTAATCCCAGATACTC TAGCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGATACTC < 41bp 1 0.381412463753626 1 0.0711600184440613 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ITPRIPL2 ENSG00000205730 UTR3 Human protein_coding chr16:19129659 chr16:19129660 . . 0 22 hm5C_associated_SNPs_11520 0 0 0 0 0 Ribosome 1 0.500231643922624 1 0.999536712154752 hm5C_site_13651 DeepMRMD:1;iRNA_m5C:0.999536712154752 13652 chr16 19129660 19129660 1 + G A rs554967254 19129661 + 19129641 19129681 41 GCTGGGCGTGGTGGCGGGCGCCTGTAATCCCAGATACTCGG GCTGGGCGTGGTGGCGGGCACCTGTAATCCCAGATACTCGG < 41bp 1 0.298115840260525 1 0.169324040412903 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ITPRIPL2 ENSG00000205730 UTR3 Human protein_coding chr16:19129661 chr16:19129660 . . 0 20 hm5C_associated_SNPs_11521 0 0 0 0 0 Ribosome 1 0.500231681229597 1 0.999536637540805 hm5C_site_13652 DeepMRMD:1;iRNA_m5C:0.999536637540805 13653 chr16 19129660 19129660 1 + G A rs554967254 19129669 + 19129649 19129689 41 TGGTGGCGGGCGCCTGTAATCCCAGATACTCGGGAGGCTAA TGGTGGCGGGCACCTGTAATCCCAGATACTCGGGAGGCTAA < 41bp 1 0.6014031999286 1 0.794882655143738 experiment 0.7971936001428 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPRIPL2 ENSG00000205730 UTR3 Human protein_coding chr16:19129669 chr16:19129660 . . 0 12 hm5C_associated_SNPs_11523 0 0 0 0 0 Ribosome 1 0.500231503715775 0.410234689712524 0.999536992568449 hm5C_site_13653 DeepMRMD:0.410234689712524;iRNA_m5C:0.999536992568449 13654 chr16 19129660 19129660 1 + G A rs554967254 19129671 + 19129651 19129691 41 GTGGCGGGCGCCTGTAATCCCAGATACTCGGGAGGCTAAGG GTGGCGGGCACCTGTAATCCCAGATACTCGGGAGGCTAAGG < 41bp 1 0.529719464095598 1 0.786957919597626 experiment 0.940561071808804 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ITPRIPL2 ENSG00000205730 UTR3 Human protein_coding chr16:19129671 chr16:19129660 . . 0 10 hm5C_associated_SNPs_11525 0 0 0 0 0 Ribosome 1 0.500231643920116 0.426084160804748 0.999536712159768 hm5C_site_13654 DeepMRMD:0.426084160804748;iRNA_m5C:0.999536712159768 13655 chr16 19131674 19131674 1 + G A rs149058873 19131655 + 19131635 19131675 41 CTCAAGCCATCCTCCCACCTCGGCCTCCCAAAGTGTTGGGA CTCAAGCCATCCTCCCACCTCGGCCTCCCAAAGTGTTGGAA < 41bp 1 0.439936252767666 1 0.254073143005371 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITPRIPL2 ENSG00000261759 ncRNA_intronic Human antisense chr16:19131655 chr16:19131674 . . 0 40 hm5C_associated_SNPs_11526 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13655 DeepMRMD:1;iRNA_m5C:0.999536712157815 13656 chr16 19132014 19132014 1 + G T rs58273010 19132012 + 19131992 19132032 41 GCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTACCT GCCAGGCTGGTCTCGAACTCCTTACCTCAGGTGATCTACCT < 41bp 1 0.239617775571142 1 0.111676573753357 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ITPRIPL2 ENSG00000261759 ncRNA_intronic Human antisense chr16:19132012 chr16:19132014 . . 0 23 hm5C_associated_SNPs_11527 0 0 0 0 0 Ribosome 1 0.500231643922462 1 0.999536712155077 hm5C_site_13656 DeepMRMD:1;iRNA_m5C:0.999536712155077 13657 chr16 19132014 19132014 1 + G T rs58273010 19132016 + 19131996 19132036 41 GGCTGGTCTCGAACTCCTGACCTCAGGTGATCTACCTGCCT GGCTGGTCTCGAACTCCTTACCTCAGGTGATCTACCTGCCT < 41bp 1 0.329667511729797 1 0.102008789777756 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ITPRIPL2 ENSG00000261759 ncRNA_intronic Human antisense chr16:19132016 chr16:19132014 . . 0 19 hm5C_associated_SNPs_11528 0 0 0 0 0 Ribosome 1 0.50023164392685 1 0.9995367121463 hm5C_site_13657 DeepMRMD:1;iRNA_m5C:0.9995367121463 13658 chr16 19460888 19460888 1 + G A rs16972013 19460903 + 19460883 19460923 41 TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGT TGAAAATGGTCCTGTCCATGCTTATGGAAACCCACCATTGT < 41bp 1 0.13601398022538 1 0.0959940254688263 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMC5 ENSG00000103534 CDS Human protein_coding chr16:19460903 chr16:19460888 nonsynonymous SNV 0.005 0 6 hm5C_associated_SNPs_11529 0 0 1 0 2 cytosol 1 0.500231643996894 1 0.999536712006213 hm5C_site_13658 DeepMRMD:1;iRNA_m5C:0.999536712006213 Systolic blood pressure change trajectories 13659 chr16 22019653 22019653 1 + C A rs368259073 22019663 + 22019643 22019683 41 CTCAGGATGTCTCTTTCTGGCCGCCGATATCTTCGCCATCG CTCAGGATGTATCTTTCTGGCCGCCGATATCTTCGCCATCG < 41bp 1 0.485841921492373 1 0.0513626337051392 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C16orf52 ENSG00000185716 CDS Human protein_coding chr16:22019663 chr16:22019653 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_11531 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_13659 DeepMRMD:1;iRNA_m5C:0.999536712157815 13660 chr16 22308511 22308511 1 + C T rs117203517 22308501 + 22308481 22308521 41 TAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGGCGTGG TAAGGCGCTGGATTAAGGCTCCAGTCTCTTTGGGGGCGTGG < 41bp 1 0.184281619446951 1 0.165005266666412 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 upstream Human protein_coding chr16:22308501 chr16:22308511 . . 0 31 hm5C_associated_SNPs_11532 0 0 1 0 0 Ribosome 1 0.50023067026083 1 0.999538659478341 hm5C_site_13660 DeepMRMD:1;iRNA_m5C:0.999538659478341 13661 chr16 22308511 22308511 1 + C T rs117203517 22308531 + 22308511 22308551 41 CGGGGGCGTGGGTTCGAATCCCACCGCTGCCAGGGTTGCTG TGGGGGCGTGGGTTCGAATCCCACCGCTGCCAGGGTTGCTG < 41bp 1 0.210394268593037 1 0.122837662696838 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target POLR3E ENSG00000058600 upstream Human protein_coding chr16:22308531 chr16:22308511 . . 0 1 hm5C_associated_SNPs_11534 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13661 DeepMRMD:1;iRNA_m5C:0.999536712157815 13662 chr16 22328486 22328486 1 + C T rs143440180 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCATGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT < 41bp 1 0.214542957172554 1 0.220988094806671 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328486 nonsynonymous SNV 0.869 4 8 hm5C_associated_SNPs_11535 0 0 1 0 2 Ribosome 1 0.500231692380049 1 0.999536615239901 hm5C_site_13662 DeepMRMD:1;iRNA_m5C:0.999536615239901 13663 chr16 22448380 22448380 1 + T G rs373906442 22448367 - 22448347 22448387 41 GCTCACAAGGCCACTGCTAACCCGCCTCCCGGCTCCGCTGG GCTCACACGGCCACTGCTAACCCGCCTCCCGGCTCCGCTGG < 41bp 1 0.61817155522627 1 0.562423884868622 experiment 0.76365688954746 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RRN3P3;SMG1P1 ENSG00000237296;ENSG00000257122 ncRNA_exonic Human other chr16:22448367 chr16:22448380 . . 0 8 hm5C_associated_SNPs_11536 0 0 0 0 1 unknown 1 0.500231643920406 0.875152230262756 0.999536712159187 hm5C_site_13663 DeepMRMD:0.875152230262756;iRNA_m5C:0.999536712159187 13664 chr16 24550930 24550930 1 + A C rs9922288 24550931 + 24550911 24550951 41 AGGCCGCGTCCGCCATAGTACCTGGCTTGGAGGTGTCGCCG AGGCCGCGTCCGCCATAGTCCCTGGCTTGGAGGTGTCGCCG < 41bp 1 0.471848405962513 1 0.0840450525283813 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBBP6 ENSG00000122257 UTR5 Human protein_coding chr16:24550931 chr16:24550930 . . 0 20 hm5C_associated_SNPs_11537 0 0 1 0 0 Cytosol 1 0.500232198170345 1 0.99953560365931 hm5C_site_13664 DeepMRMD:1;iRNA_m5C:0.99953560365931 13665 chr16 24582709 24582709 1 + A G rs140198744 24582720 + 24582700 24582740 41 GAAATTTTAAAAGTCTGTCTCAATCTTCCAAAGAGGCTAGA GAAATTTTAGAAGTCTGTCTCAATCTTCCAAAGAGGCTAGA < 41bp 1 0.0962916229116008 1 0.668595612049103 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout RBBP6 ENSG00000122257 CDS Human protein_coding chr16:24582720 chr16:24582709 nonsynonymous SNV 0.998 1 10 hm5C_associated_SNPs_11538 0 0 1 0 0 Cytosol 1 0.500231627395014 0.662808775901794 0.999536745209971 hm5C_site_13665 DeepMRMD:0.662808775901794;iRNA_m5C:0.999536745209971 13666 chr16 27325264 27325264 1 + G C rs35583025 27325251 + 27325231 27325271 41 GGTCTCCGCGCCCAGGAAAGCCCCGCGCGGCGCGGGCCAGG GGTCTCCGCGCCCAGGAAAGCCCCGCGCGGCGCCGGCCAGG < 41bp 1 0.679950925340196 1 0.22250360250473 experiment 0.640098149319608 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IL4R ENSG00000077238 UTR5 Human protein_coding chr16:27325251 chr16:27325264 . . 0 34 hm5C_associated_SNPs_11539 0 0 1 0 1 Endoplasmic reticulum 1 0.500231640434841 1 0.999536719130319 hm5C_site_13666 DeepMRMD:1;iRNA_m5C:0.999536719130319 13667 chr16 27325264 27325264 1 + G C rs35583025 27325252 + 27325232 27325272 41 GTCTCCGCGCCCAGGAAAGCCCCGCGCGGCGCGGGCCAGGG GTCTCCGCGCCCAGGAAAGCCCCGCGCGGCGCCGGCCAGGG < 41bp 1 0.536450409925766 1 0.173686474561691 experiment 0.927099180148469 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IL4R ENSG00000077238 UTR5 Human protein_coding chr16:27325252 chr16:27325264 . . 0 33 hm5C_associated_SNPs_11540 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164374884 1 0.999536712502321 hm5C_site_13667 DeepMRMD:1;iRNA_m5C:0.999536712502321 13668 chr16 27461175 27461175 1 + G A rs184150559 27461195 + 27461175 27461215 41 GGGAATGGCAATTTTTTGGGCGGCCCCTGGACGAAGGTCTG AGGAATGGCAATTTTTTGGGCGGCCCCTGGACGAAGGTCTG < 41bp 1 0.239442228329799 1 0.4115110039711 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IL21R-AS1 ENSG00000259954 ncRNA_intronic Human antisense chr16:27461195 chr16:27461175 . . 0 1 hm5C_associated_SNPs_11544 0 0 0 0 0 unknown 1 0.500231643921064 1 0.999536712157871 hm5C_site_13668 DeepMRMD:1;iRNA_m5C:0.999536712157871 13669 chr16 27461201 27461201 1 + C A rs2239928 27461195 + 27461175 27461215 41 GGGAATGGCAATTTTTTGGGCGGCCCCTGGACGAAGGTCTG GGGAATGGCAATTTTTTGGGCGGCCCATGGACGAAGGTCTG < 41bp 1 0.273135637673699 1 0.319961369037628 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IL21R-AS1 ENSG00000259954 ncRNA_intronic Human antisense chr16:27461195 chr16:27461201 . . 0 27 hm5C_associated_SNPs_11545 0 0 0 0 0 unknown 1 0.500231643922788 1 0.999536712154425 hm5C_site_13669 DeepMRMD:1;iRNA_m5C:0.999536712154425 13670 chr16 27761011 27761011 1 + C A rs183816511 27761012 + 27760992 27761032 41 GTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG GTGCCTTCGACCGCTCCCAACGGGGACGCATCTCCAACACG < 41bp 1 0.559439874591836 1 0.829036712646484 experiment 0.881120250816329 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27761012 chr16:27761011 nonsynonymous SNV 0.929 2 20 hm5C_associated_SNPs_11546 0 0 0 0 0 Nucleus 1 0.500231643921231 0.341926574707032 0.999536712157538 hm5C_site_13670 DeepMRMD:0.341926574707032;iRNA_m5C:0.999536712157538 13671 chr16 27790445 27790445 1 + C T rs554459878 27790435 + 27790415 27790455 41 TGAGCTTCAGCGGCCAACACCCCCCATCCCCTGCGCATCCT TGAGCTTCAGCGGCCAACACCCCCCATCCCTTGCGCATCCT < 41bp 1 0.110867899480967 1 0.133778512477875 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0556 ENSG00000047578 UTR3 Human protein_coding chr16:27790435 chr16:27790445 . . 0 31 hm5C_associated_SNPs_11547 0 0 0 0 0 Nucleus 1 0.500231643921116 1 0.999536712157769 hm5C_site_13671 DeepMRMD:1;iRNA_m5C:0.999536712157769 13672 chr16 27790449 27790449 1 + G A rs574361948 27790435 + 27790415 27790455 41 TGAGCTTCAGCGGCCAACACCCCCCATCCCCTGCGCATCCT TGAGCTTCAGCGGCCAACACCCCCCATCCCCTGCACATCCT < 41bp 1 0.12334174918913 1 0.178861379623413 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0556 ENSG00000047578 UTR3 Human protein_coding chr16:27790435 chr16:27790449 . . 0 35 hm5C_associated_SNPs_11548 0 0 0 0 0 Nucleus 1 0.500231643921028 1 0.999536712157944 hm5C_site_13672 DeepMRMD:1;iRNA_m5C:0.999536712157944 13673 chr16 28332182 28332182 1 + C T rs149836448 28332167 + 28332147 28332187 41 CTAGCTCCCCAGGGGCCCCCCGGCCGGACCGACGGCCGCGC CTAGCTCCCCAGGGGCCCCCCGGCCGGACCGACGGTCGCGC < 41bp 1 0.675920234158112 1 0.758095800876617 experiment 0.648159531683776 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control SBK1 ENSG00000188322 CDS Human protein_coding chr16:28332167 chr16:28332182 synonymous SNV . 0 36 hm5C_associated_SNPs_11549 0 0 0 0 0 exosome 1 0.500231643921093 0.483808398246766 0.999536712157813 hm5C_site_13673 DeepMRMD:0.483808398246766;iRNA_m5C:0.999536712157813 13674 chr16 28334232 28334232 1 + T G rs535599416 28334241 + 28334221 28334261 41 CGCTCTCTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTC CGCTCTCTCTCGCGCGCGCGCTCTCTCTCTCCCTCTCTCTC < 41bp 1 0.0703204152985386 1 0.0292713642120361 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334241 chr16:28334232 . . 0 12 hm5C_associated_SNPs_11551 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13674 DeepMRMD:1;iRNA_m5C:0.999536712157815 13675 chr16 28334232 28334232 1 + T G rs535599416 28334243 + 28334223 28334263 41 CTCTCTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTC CTCTCTCTCGCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTC < 41bp 1 0.122361373161362 1 0.0602722764015198 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334243 chr16:28334232 . . 0 10 hm5C_associated_SNPs_11552 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13675 DeepMRMD:1;iRNA_m5C:0.999536712157815 13676 chr16 28334232 28334232 1 + T G rs535599416 28334245 + 28334225 28334265 41 CTCTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTC CTCTCTCGCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTC < 41bp 1 0.172559839960398 1 0.14077216386795 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334245 chr16:28334232 . . 0 8 hm5C_associated_SNPs_11553 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13676 DeepMRMD:1;iRNA_m5C:0.999536712157815 13677 chr16 28334232 28334232 1 + T G rs535599416 28334247 + 28334227 28334267 41 CTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTC CTCTCGCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTC < 41bp 1 0.135688515129749 1 0.178844273090363 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334247 chr16:28334232 . . 0 6 hm5C_associated_SNPs_11554 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13677 DeepMRMD:1;iRNA_m5C:0.999536712157815 13678 chr16 28334232 28334232 1 + T G rs535599416 28334249 + 28334229 28334269 41 CTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTC CTCGCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTC < 41bp 1 0.223635272140201 1 0.229355216026306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334249 chr16:28334232 . . 0 4 hm5C_associated_SNPs_11555 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13678 DeepMRMD:1;iRNA_m5C:0.999536712157815 13679 chr16 28334232 28334232 1 + T G rs535599416 28334251 + 28334231 28334271 41 CTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTC CGCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0489649987677169 1 0.0747556686401367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334251 chr16:28334232 . . 0 2 hm5C_associated_SNPs_11556 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13679 DeepMRMD:1;iRNA_m5C:0.999536712157815 13680 chr16 28334234 28334234 1 + G A rs57895968 28334241 + 28334221 28334261 41 CGCTCTCTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTC CGCTCTCTCTCTCACGCGCGCTCTCTCTCTCCCTCTCTCTC < 41bp 1 0.0497250951238474 1 0.0233500003814697 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334241 chr16:28334234 . . 0 14 hm5C_associated_SNPs_11557 0 0 1 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_13680 DeepMRMD:1;iRNA_m5C:0.999536712157815 13681 chr16 28334234 28334234 1 + G A rs57895968 28334243 + 28334223 28334263 41 CTCTCTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTC CTCTCTCTCTCACGCGCGCTCTCTCTCTCCCTCTCTCTCTC < 41bp 1 0.101228467524662 1 0.0490353405475616 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334243 chr16:28334234 . . 0 12 hm5C_associated_SNPs_11558 0 0 1 0 0 exosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_13681 DeepMRMD:1;iRNA_m5C:0.999536712157813 13682 chr16 28334234 28334234 1 + G A rs57895968 28334245 + 28334225 28334265 41 CTCTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTC CTCTCTCTCACGCGCGCTCTCTCTCTCCCTCTCTCTCTCTC < 41bp 1 0.137030675277735 1 0.0586787164211273 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334245 chr16:28334234 . . 0 10 hm5C_associated_SNPs_11559 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13682 DeepMRMD:1;iRNA_m5C:0.999536712157815 13683 chr16 28334234 28334234 1 + G A rs57895968 28334247 + 28334227 28334267 41 CTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTC CTCTCTCACGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTC < 41bp 1 0.113393052777185 1 0.125375151634216 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334247 chr16:28334234 . . 0 8 hm5C_associated_SNPs_11560 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13683 DeepMRMD:1;iRNA_m5C:0.999536712157815 13684 chr16 28334234 28334234 1 + G A rs57895968 28334249 + 28334229 28334269 41 CTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTC CTCTCACGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTC < 41bp 1 0.223731927520549 1 0.40145269036293 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334249 chr16:28334234 . . 0 6 hm5C_associated_SNPs_11561 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13684 DeepMRMD:1;iRNA_m5C:0.999536712157815 13685 chr16 28334234 28334234 1 + G A rs57895968 28334251 + 28334231 28334271 41 CTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTC CTCACGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTC < 41bp 1 0.051866086943499 1 0.0837922990322113 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334251 chr16:28334234 . . 0 4 hm5C_associated_SNPs_11562 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13685 DeepMRMD:1;iRNA_m5C:0.999536712157815 13686 chr16 28334234 28334234 1 + G A rs57895968 28334253 + 28334233 28334273 41 CGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTC CACGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.076272953372927 1 0.0603934824466705 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334253 chr16:28334234 . . 0 2 hm5C_associated_SNPs_11563 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13686 DeepMRMD:1;iRNA_m5C:0.999536712157815 13687 chr16 28334240 28334240 1 + G A rs2937102 28334241 + 28334221 28334261 41 CGCTCTCTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTC CGCTCTCTCTCTCGCGCGCACTCTCTCTCTCCCTCTCTCTC < 41bp 1 0.0644593359310805 1 0.0304890871047974 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334241 chr16:28334240 . . 0 20 hm5C_associated_SNPs_11564 0 0 1 0 0 exosome 1 0.500231643921961 1 0.999536712156078 hm5C_site_13687 DeepMRMD:1;iRNA_m5C:0.999536712156078 13688 chr16 28334240 28334240 1 + G A rs2937102 28334243 + 28334223 28334263 41 CTCTCTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTC CTCTCTCTCTCGCGCGCACTCTCTCTCTCCCTCTCTCTCTC < 41bp 1 0.144079295722035 1 0.0448679327964783 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334243 chr16:28334240 . . 0 18 hm5C_associated_SNPs_11565 0 0 1 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_13688 DeepMRMD:1;iRNA_m5C:0.999536712157815 13689 chr16 28334240 28334240 1 + G A rs2937102 28334245 + 28334225 28334265 41 CTCTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTC CTCTCTCTCGCGCGCACTCTCTCTCTCCCTCTCTCTCTCTC < 41bp 1 0.143655274832545 1 0.134949177503586 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334245 chr16:28334240 . . 0 16 hm5C_associated_SNPs_11566 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13689 DeepMRMD:1;iRNA_m5C:0.999536712157815 Blood protein levels 13690 chr16 28334240 28334240 1 + G A rs2937102 28334247 + 28334227 28334267 41 CTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTC CTCTCTCGCGCGCACTCTCTCTCTCCCTCTCTCTCTCTCTC < 41bp 1 0.100579350193328 1 0.142162412405014 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334247 chr16:28334240 . . 0 14 hm5C_associated_SNPs_11567 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13690 DeepMRMD:1;iRNA_m5C:0.999536712157815 Blood protein levels 13691 chr16 28334240 28334240 1 + G A rs2937102 28334249 + 28334229 28334269 41 CTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTC CTCTCGCGCGCACTCTCTCTCTCCCTCTCTCTCTCTCTCTC < 41bp 1 0.202998849090741 1 0.246207147836685 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334249 chr16:28334240 . . 0 12 hm5C_associated_SNPs_11568 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13691 DeepMRMD:1;iRNA_m5C:0.999536712157815 13692 chr16 28334240 28334240 1 + G A rs2937102 28334251 + 28334231 28334271 41 CTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTC CTCGCGCGCACTCTCTCTCTCCCTCTCTCTCTCTCTCTCTC < 41bp 1 0.044446173370904 1 0.0356850624084473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334251 chr16:28334240 . . 0 10 hm5C_associated_SNPs_11569 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13692 DeepMRMD:1;iRNA_m5C:0.999536712157815 13693 chr16 28334240 28334240 1 + G A rs2937102 28334253 + 28334233 28334273 41 CGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTC CGCGCGCACTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0744868262819194 1 0.0342608392238617 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334253 chr16:28334240 . . 0 8 hm5C_associated_SNPs_11570 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13693 DeepMRMD:1;iRNA_m5C:0.999536712157815 13694 chr16 28334240 28334240 1 + G A rs2937102 28334255 + 28334235 28334275 41 CGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTC CGCGCACTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0674271739417681 1 0.131687521934509 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334255 chr16:28334240 . . 0 6 hm5C_associated_SNPs_11571 0 0 1 0 0 exosome 1 0.500231643921097 1 0.999536712157807 hm5C_site_13694 DeepMRMD:1;iRNA_m5C:0.999536712157807 13695 chr16 28334240 28334240 1 + G A rs2937102 28334257 + 28334237 28334277 41 CGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTC CGCACTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0713253102160726 1 0.0684449672698975 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334257 chr16:28334240 . . 0 4 hm5C_associated_SNPs_11572 0 0 1 0 0 exosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_13695 DeepMRMD:1;iRNA_m5C:0.999536712157806 13696 chr16 28334240 28334240 1 + G A rs2937102 28334259 + 28334239 28334279 41 CGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTC CACTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0731887873172503 1 0.110819637775421 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334259 chr16:28334240 . . 0 2 hm5C_associated_SNPs_11573 0 0 1 0 0 exosome 1 0.500231643921191 1 0.999536712157619 hm5C_site_13696 DeepMRMD:1;iRNA_m5C:0.999536712157619 13697 chr16 28334252 28334252 1 + C A rs28604268 28334241 + 28334221 28334261 41 CGCTCTCTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTC CGCTCTCTCTCTCGCGCGCGCTCTCTCTCTCACTCTCTCTC < 41bp 1 0.0615927643967207 1 0.0337266027927399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334241 chr16:28334252 . . 0 32 hm5C_associated_SNPs_11574 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13697 DeepMRMD:1;iRNA_m5C:0.999536712157815 13698 chr16 28334252 28334252 1 + C A rs28604268 28334243 + 28334223 28334263 41 CTCTCTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTC CTCTCTCTCTCGCGCGCGCTCTCTCTCTCACTCTCTCTCTC < 41bp 1 0.109012940355044 1 0.0524032711982727 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334243 chr16:28334252 . . 0 30 hm5C_associated_SNPs_11575 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13698 DeepMRMD:1;iRNA_m5C:0.999536712157815 13699 chr16 28334252 28334252 1 + C A rs28604268 28334245 + 28334225 28334265 41 CTCTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTC CTCTCTCTCGCGCGCGCTCTCTCTCTCACTCTCTCTCTCTC < 41bp 1 0.155874823790934 1 0.160698473453522 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334245 chr16:28334252 . . 0 28 hm5C_associated_SNPs_11576 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13699 DeepMRMD:1;iRNA_m5C:0.999536712157815 13700 chr16 28334252 28334252 1 + C A rs28604268 28334247 + 28334227 28334267 41 CTCTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTC CTCTCTCGCGCGCGCTCTCTCTCTCACTCTCTCTCTCTCTC < 41bp 1 0.142930816238594 1 0.128502607345581 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334247 chr16:28334252 . . 0 26 hm5C_associated_SNPs_11577 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13700 DeepMRMD:1;iRNA_m5C:0.999536712157815 13701 chr16 28334252 28334252 1 + C A rs28604268 28334249 + 28334229 28334269 41 CTCTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTC CTCTCGCGCGCGCTCTCTCTCTCACTCTCTCTCTCTCTCTC < 41bp 1 0.186127381026589 1 0.0930871367454529 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334249 chr16:28334252 . . 0 24 hm5C_associated_SNPs_11578 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13701 DeepMRMD:1;iRNA_m5C:0.999536712157815 13702 chr16 28334252 28334252 1 + C A rs28604268 28334251 + 28334231 28334271 41 CTCGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTC CTCGCGCGCGCTCTCTCTCTCACTCTCTCTCTCTCTCTCTC < 41bp 1 0.129677382497 1 0.11958372592926 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334251 chr16:28334252 . . 0 22 hm5C_associated_SNPs_11579 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13702 DeepMRMD:1;iRNA_m5C:0.999536712157815 13703 chr16 28334252 28334252 1 + C A rs28604268 28334253 + 28334233 28334273 41 CGCGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTC CGCGCGCGCTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0873303035492949 1 0.0695760548114777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334253 chr16:28334252 . . 0 20 hm5C_associated_SNPs_11580 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13703 DeepMRMD:1;iRNA_m5C:0.999536712157815 13704 chr16 28334252 28334252 1 + C A rs28604268 28334255 + 28334235 28334275 41 CGCGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTC CGCGCGCTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0897160072756439 1 0.0593827962875366 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334255 chr16:28334252 . . 0 18 hm5C_associated_SNPs_11581 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13704 DeepMRMD:1;iRNA_m5C:0.999536712157815 13705 chr16 28334252 28334252 1 + C A rs28604268 28334257 + 28334237 28334277 41 CGCGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTC CGCGCTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0781529986706245 1 0.0544576346874237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334257 chr16:28334252 . . 0 16 hm5C_associated_SNPs_11582 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13705 DeepMRMD:1;iRNA_m5C:0.999536712157815 13706 chr16 28334252 28334252 1 + C A rs28604268 28334259 + 28334239 28334279 41 CGCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTC CGCTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0797174893217376 1 0.0709303319454193 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334259 chr16:28334252 . . 0 14 hm5C_associated_SNPs_11583 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13706 DeepMRMD:1;iRNA_m5C:0.999536712157815 13707 chr16 28334252 28334252 1 + C A rs28604268 28334261 + 28334241 28334281 41 CTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC CTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0766939504276479 1 0.113385230302811 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334261 chr16:28334252 . . 0 12 hm5C_associated_SNPs_11584 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13707 DeepMRMD:1;iRNA_m5C:0.999536712157815 13708 chr16 28334252 28334252 1 + C A rs28604268 28334263 + 28334243 28334283 41 CTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC CTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0726203284102057 1 0.10577055811882 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334263 chr16:28334252 . . 0 10 hm5C_associated_SNPs_11585 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13708 DeepMRMD:1;iRNA_m5C:0.999536712157815 13709 chr16 28334252 28334252 1 + C A rs28604268 28334265 + 28334245 28334285 41 CTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC CTCTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0762016184674943 1 0.0992410480976105 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334265 chr16:28334252 . . 0 8 hm5C_associated_SNPs_11586 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13709 DeepMRMD:1;iRNA_m5C:0.999536712157815 13710 chr16 28334252 28334252 1 + C A rs28604268 28334267 + 28334247 28334287 41 CTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC CTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0766903393225659 1 0.0991062223911285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334267 chr16:28334252 . . 0 6 hm5C_associated_SNPs_11587 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13710 DeepMRMD:1;iRNA_m5C:0.999536712157815 13711 chr16 28334252 28334252 1 + C A rs28604268 28334269 + 28334249 28334289 41 CTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC CTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0772481581614105 1 0.0835127532482147 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334269 chr16:28334252 . . 0 4 hm5C_associated_SNPs_11588 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13711 DeepMRMD:1;iRNA_m5C:0.999536712157815 13712 chr16 28334252 28334252 1 + C A rs28604268 28334271 + 28334251 28334291 41 CCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC CACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC < 41bp 1 0.0685207038595525 1 0.10300749540329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SBK1 ENSG00000188322 UTR3 Human protein_coding chr16:28334271 chr16:28334252 . . 0 2 hm5C_associated_SNPs_11589 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13712 DeepMRMD:1;iRNA_m5C:0.999536712157815 13713 chr16 28845909 28845909 1 + G A rs142624994 28845926 + 28845906 28845946 41 CCCGCCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATCC CCCACCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATCC < 41bp 1 0.424015906342943 1 0.864451289176941 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845926 chr16:28845909 synonymous SNV . 0 4 hm5C_associated_SNPs_11590 0 0 1 0 1 Cytosol 1 0.500231643921104 0.271097421646118 0.999536712157793 hm5C_site_13713 DeepMRMD:0.271097421646118;iRNA_m5C:0.999536712157793 13714 chr16 28847772 28847772 1 + C G rs201701678 28847774 + 28847754 28847794 41 CCCACTGCCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCT CCCACTGCCTCCCCAGCTGTCAGTGACCCCGACTGTCTCCT < 41bp 1 0.561029405076436 1 0.728786587715149 experiment 0.877941189847127 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847774 chr16:28847772 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_11591 0 0 1 0 1 Cytosol 1 0.500231643921163 0.542426824569702 0.999536712157675 hm5C_site_13714 DeepMRMD:0.542426824569702;iRNA_m5C:0.999536712157675 13715 chr16 28848356 28848356 1 + C T rs193268136 28848373 + 28848353 28848393 41 CCCCGCTGGAGACGGAAGATCTTTTATTTTCTATTATTTAT CCCTGCTGGAGACGGAAGATCTTTTATTTTCTATTATTTAT < 41bp 1 0.131499785666376 1 0.0700458884239197 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ATXN2L ENSG00000260570 ncRNA_exonic Human antisense chr16:28848373 chr16:28848356 . . 0 4 hm5C_associated_SNPs_11592 0 0 1 0 0 Cytosol 1 0.500231643921448 1 0.999536712157104 hm5C_site_13715 DeepMRMD:1;iRNA_m5C:0.999536712157104 13716 chr16 28848426 28848426 1 + C A rs534808521 28848411 + 28848391 28848431 41 TATAACTTCAGACTTGGGCCCCCTGTTCTTTCTTTCCCATT TATAACTTCAGACTTGGGCCCCCTGTTCTTTCTTTACCATT < 41bp 1 0.0996101046002554 1 0.0378513336181641 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000260570 ncRNA_exonic Human antisense chr16:28848411 chr16:28848426 . . 0 36 hm5C_associated_SNPs_11593 0 0 1 1 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13716 DeepMRMD:1;iRNA_m5C:0.999536712157815 13717 chr16 28970053 28970053 1 + A T rs536656003 28970039 + 28970019 28970059 41 TTGTTGTCCCCATCCCTAGTCGGAGCCCCTGCAGAGTGTGG TTGTTGTCCCCATCCCTAGTCGGAGCCCCTGCAGTGTGTGG < 41bp 1 0.555847902171561 1 0.898181438446045 experiment 0.888304195656878 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28970039 chr16:28970053 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_11594 0 0 1 0 1 Ribosome 1 0.500231643921092 0.20363712310791 0.999536712157815 hm5C_site_13717 DeepMRMD:0.20363712310791;iRNA_m5C:0.999536712157815 13718 chr16 28970122 28970122 1 + A T rs201303990 28970135 + 28970115 28970155 41 TGGAGAGACAGAGCTATCACCTACTGCCACTCCCAGGACCC TGGAGAGTCAGAGCTATCACCTACTGCCACTCCCAGGACCC < 41bp 1 0.516795739937645 1 0.0385141372680664 experiment 0.966408520124709 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28970135 chr16:28970122 nonsynonymous SNV 0.996 0 8 hm5C_associated_SNPs_11595 0 0 1 0 2 Ribosome 1 0.500231643921106 1 0.999536712157787 hm5C_site_13718 DeepMRMD:1;iRNA_m5C:0.999536712157787 13719 chr16 28975329 28975329 1 + G A rs186123506 28975347 + 28975327 28975367 41 CTGTTGACCCTGGTTTAGAGCCGTTAACCACTTGGTGAGTT CTATTGACCCTGGTTTAGAGCCGTTAACCACTTGGTGAGTT < 41bp 1 0.110339797482667 1 0.103283315896988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFATC2IP ENSG00000260853 ncRNA_intronic Human antisense chr16:28975347 chr16:28975329 . . 0 3 hm5C_associated_SNPs_11596 0 0 1 0 0 Ribosome 1 0.500231643910934 1 0.999536712178132 hm5C_site_13719 DeepMRMD:1;iRNA_m5C:0.999536712178132 13720 chr16 29706442 29706442 1 + C T rs200392225 29706444 + 29706424 29706464 41 GCTCCTGGTGGGCGGGGCCGCCTCGCACCGCTACGACCTGG GCTCCTGGTGGGCGGGGCTGCCTCGCACCGCTACGACCTGG < 41bp 1 0.239839166229522 1 0.0902343094348907 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29706444 chr16:29706442 synonymous SNV . 0 19 hm5C_associated_SNPs_11597 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921081 1 0.999536712157837 hm5C_site_13720 DeepMRMD:1;iRNA_m5C:0.999536712157837 13721 chr16 29706442 29706442 1 + C T rs200392225 29706451 + 29706431 29706471 41 GTGGGCGGGGCCGCCTCGCACCGCTACGACCTGGGAGGGCT GTGGGCGGGGCTGCCTCGCACCGCTACGACCTGGGAGGGCT < 41bp 1 0.392562515359222 1 0.12350133061409 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29706451 chr16:29706442 synonymous SNV . 0 12 hm5C_associated_SNPs_11598 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921607 1 0.999536712156787 hm5C_site_13721 DeepMRMD:1;iRNA_m5C:0.999536712156787 13722 chr16 29706444 29706444 1 + C T rs2303255 29706442 + 29706422 29706462 41 GGGCTCCTGGTGGGCGGGGCCGCCTCGCACCGCTACGACCT GGGCTCCTGGTGGGCGGGGCCGTCTCGCACCGCTACGACCT < 41bp 1 0.262940996829933 1 0.199633538722992 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29706442 chr16:29706444 nonsynonymous SNV 0.221 1 23 hm5C_associated_SNPs_11599 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_13722 DeepMRMD:1;iRNA_m5C:0.999536712157815 13723 chr16 29706444 29706444 1 + C T rs2303255 29706451 + 29706431 29706471 41 GTGGGCGGGGCCGCCTCGCACCGCTACGACCTGGGAGGGCT GTGGGCGGGGCCGTCTCGCACCGCTACGACCTGGGAGGGCT < 41bp 1 0.430057303850431 1 0.106390804052353 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29706451 chr16:29706444 nonsynonymous SNV 0.221 1 14 hm5C_associated_SNPs_11600 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643919401 1 0.999536712161199 hm5C_site_13723 DeepMRMD:1;iRNA_m5C:0.999536712161199 13724 chr16 29708350 29708350 1 + A G rs9932770 29708330 + 29708310 29708350 41 CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTCA CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTCG < 41bp 1 0.485722947965964 1 0.269349038600922 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708330 chr16:29708350 nonsynonymous SNV 0.004 0 41 hm5C_associated_SNPs_11601 0 0 1 0 2 Endoplasmic reticulum 1 0.500232498316865 1 0.99953500336627 hm5C_site_13724 DeepMRMD:1;iRNA_m5C:0.99953500336627 13725 chr16 29810471 29810471 1 + G A rs550717370 29810478 + 29810458 29810498 41 CGGCTCAACCAGCGCTCCTCCCGCAGTCATGCTGTGCTCCT CGGCTCAACCAGCACTCCTCCCGCAGTCATGCTGTGCTCCT < 41bp 1 0.581314165315232 1 0.169766873121262 experiment 0.837371669369536 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29810478 chr16:29810471 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_11602 0 0 1 0 1 Cytosol 1 0.500231718556647 1 0.999536562886706 hm5C_site_13725 DeepMRMD:1;iRNA_m5C:0.999536562886706 13726 chr16 29817998 29817998 1 + C G rs111993640 29817978 + 29817958 29817998 41 GGGCCCCGCGCGGCCCGCGCCCCCGGCCCCCGCTGAGCCCC GGGCCCCGCGCGGCCCGCGCCCCCGGCCCCCGCTGAGCCCG < 41bp 1 0.622258891512964 1 0.457547575235367 experiment 0.755482216974072 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAZ ENSG00000259952 ncRNA_intronic Human antisense chr16:29817978 chr16:29817998 . . 0 41 hm5C_associated_SNPs_11604 0 0 1 0 0 Cytosol 1 0.500231641685314 1 0.999536716629372 hm5C_site_13726 DeepMRMD:1;iRNA_m5C:0.999536716629372 13727 chr16 29817998 29817998 1 + C G rs111993640 29817980 + 29817960 29818000 41 GCCCCGCGCGGCCCGCGCCCCCGGCCCCCGCTGAGCCCCGG GCCCCGCGCGGCCCGCGCCCCCGGCCCCCGCTGAGCCCGGG < 41bp 1 0.660455247842262 1 0.882867574691772 experiment 0.679089504315475 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAZ ENSG00000259952 ncRNA_intronic Human antisense chr16:29817980 chr16:29817998 . . 0 39 hm5C_associated_SNPs_11606 0 0 1 0 0 Cytosol 1 0.500231638341169 0.234264850616456 0.999536723317662 hm5C_site_13727 DeepMRMD:0.234264850616456;iRNA_m5C:0.999536723317662 13728 chr16 29817998 29817998 1 + C G rs111993640 29817981 + 29817961 29818001 41 CCCCGCGCGGCCCGCGCCCCCGGCCCCCGCTGAGCCCCGGG CCCCGCGCGGCCCGCGCCCCCGGCCCCCGCTGAGCCCGGGG < 41bp 1 0.694111470405749 1 0.799596190452576 experiment 0.611777059188502 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAZ ENSG00000259952 ncRNA_intronic Human antisense chr16:29817981 chr16:29817998 . . 0 38 hm5C_associated_SNPs_11607 0 0 1 0 0 Cytosol 1 0.50023164449507 0.400807619094848 0.999536711009859 hm5C_site_13728 DeepMRMD:0.400807619094848;iRNA_m5C:0.999536711009859 13729 chr16 29818888 29818888 1 + C G rs570535260 29818891 + 29818871 29818911 41 CGGCGCTGCCGCAGTGGCCGCCGGTGGCGTGGTGACCACGA CGGCGCTGCCGCAGTGGGCGCCGGTGGCGTGGTGACCACGA < 41bp 1 0.574344968977466 1 0.838145017623901 experiment 0.851310062045068 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29818891 chr16:29818888 nonsynonymous SNV 0.962 0 18 hm5C_associated_SNPs_11608 0 0 1 0 0 Cytosol 1 0.500231638184247 0.323709964752198 0.999536723631506 hm5C_site_13729 DeepMRMD:0.323709964752198;iRNA_m5C:0.999536723631506 13730 chr16 29818888 29818888 1 + C G rs570535260 29818892 + 29818872 29818912 41 GGCGCTGCCGCAGTGGCCGCCGGTGGCGTGGTGACCACGAC GGCGCTGCCGCAGTGGGCGCCGGTGGCGTGGTGACCACGAC < 41bp 1 0.604751823370441 1 0.90708726644516 experiment 0.790496353259118 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29818892 chr16:29818888 nonsynonymous SNV 0.962 0 17 hm5C_associated_SNPs_11609 0 0 1 0 0 Cytosol 1 0.500231643919492 0.18582546710968 0.999536712161016 hm5C_site_13730 DeepMRMD:0.18582546710968;iRNA_m5C:0.999536712161016 13731 chr16 29821868 29821868 1 + G A rs11144 29821878 + 29821858 29821898 41 GTAAGCCCATGCCCTGTCTTCCCAGGGACTTGTGAGCCTCT GTAAGCCCATACCCTGTCTTCCCAGGGACTTGTGAGCCTCT < 41bp 1 0.38123586819995 1 0.292255282402039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAZ ENSG00000238045 ncRNA_exonic Human antisense chr16:29821878 chr16:29821868 . . 0 11 hm5C_associated_SNPs_11610 0 0 1 1 0 Cytosol 1 0.500231643835637 1 0.999536712328726 hm5C_site_13731 DeepMRMD:1;iRNA_m5C:0.999536712328726 13732 chr16 29827587 29827587 1 + C G rs192974582 29827580 + 29827560 29827600 41 TGGAAGCGAGAAGAGTGGCCCGTCCCTCTCCTCCCCCTTTC TGGAAGCGAGAAGAGTGGCCCGTCCCTGTCCTCCCCCTTTC < 41bp 1 0.219496555842978 1 0.130719274282455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAGR1 ENSG00000261962 ncRNA_intronic Human other chr16:29827580 chr16:29827587 . . 0 28 hm5C_associated_SNPs_11611 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13732 DeepMRMD:1;iRNA_m5C:0.999536712157815 13733 chr16 29827794 29827794 1 + C T rs367962544 29827783 + 29827763 29827803 41 AACCCCCAGGGGAGCCCGATCCCTGGGGGACCCTGGCTTCG AACCCCCAGGGGAGCCCGATCCCTGGGGGACTCTGGCTTCG < 41bp 1 0.410994401339239 1 0.51846444606781 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAGR1 ENSG00000261962 ncRNA_intronic Human other chr16:29827783 chr16:29827794 . . 0 32 hm5C_associated_SNPs_11612 0 0 1 0 0 Ribosome 1 0.500231643923361 0.96307110786438 0.999536712153279 hm5C_site_13733 DeepMRMD:0.96307110786438;iRNA_m5C:0.999536712153279 13734 chr16 29827794 29827794 1 + C T rs367962544 29827784 + 29827764 29827804 41 ACCCCCAGGGGAGCCCGATCCCTGGGGGACCCTGGCTTCGG ACCCCCAGGGGAGCCCGATCCCTGGGGGACTCTGGCTTCGG < 41bp 1 0.511105263481925 1 0.691564977169037 experiment 0.977789473036151 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAGR1 ENSG00000261962 ncRNA_intronic Human other chr16:29827784 chr16:29827794 . . 0 31 hm5C_associated_SNPs_11613 0 0 1 0 0 Ribosome 1 0.500231643670132 0.616870045661926 0.999536712659735 hm5C_site_13734 DeepMRMD:0.616870045661926;iRNA_m5C:0.999536712659735 13735 chr16 29831617 29831617 1 + A G rs12149514 29831605 + 29831585 29831625 41 CAGTCCCACTCCAGTGCAGCCAGCTGGCTCCAAGGTAGAAA CAGTCCCACTCCAGTGCAGCCAGCTGGCTCCAGGGTAGAAA < 41bp 1 0.435585669864068 1 0.183151125907898 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAGR1 ENSG00000261962 ncRNA_exonic Human other chr16:29831605 chr16:29831617 . . 0 33 hm5C_associated_SNPs_11614 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13735 DeepMRMD:1;iRNA_m5C:0.999536712157815 13736 chr16 29856082 29856082 1 + G A rs35916172 29856065 + 29856045 29856085 41 CCGGGACCAGGCTGTCTTCCCCCAAAACGGGCTGGTGGTCA CCGGGACCAGGCTGTCTTCCCCCAAAACGGGCTGGTGATCA < 41bp 1 0.624860538960573 1 0.687557935714722 experiment 0.750278922078853 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29856065 chr16:29856082 nonsynonymous SNV 0.997 0 38 hm5C_associated_SNPs_11615 0 0 0 0 0 Nucleus 1 0.500231643921092 0.624884128570556 0.999536712157815 hm5C_site_13736 DeepMRMD:0.624884128570556;iRNA_m5C:0.999536712157815 13737 chr16 29994922 29994922 1 + C T rs3814883 29994940 + 29994920 29994960 41 TCCGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT TCTGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT < 41bp 1 0.628882505140034 1 0.0797471702098846 experiment 0.742234989719933 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994940 chr16:29994922 synonymous SNV . 0 3 hm5C_associated_SNPs_11616 0 1 1 0 2 Nucleus 1 0.500231643921094 1 0.999536712157811 hm5C_site_13737 DeepMRMD:1;iRNA_m5C:0.999536712157811 13738 chr16 30016644 30016644 1 + C A rs201487520 30016663 + 30016643 30016683 41 CCCTAAGATGCCCCCCCCCACGATCCTGAGCACGGTCCCTC CACTAAGATGCCCCCCCCCACGATCCTGAGCACGGTCCCTC < 41bp 1 0.252848002422029 1 0.119043618440628 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INO80E ENSG00000169592 CDS Human protein_coding chr16:30016663 chr16:30016644 nonsynonymous SNV 0.111 0 2 hm5C_associated_SNPs_11618 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13738 DeepMRMD:1;iRNA_m5C:0.999536712157815 13739 chr16 30016676 30016676 1 + G A rs531403814 30016663 + 30016643 30016683 41 CCCTAAGATGCCCCCCCCCACGATCCTGAGCACGGTCCCTC CCCTAAGATGCCCCCCCCCACGATCCTGAGCACAGTCCCTC < 41bp 1 0.264389520540827 1 0.11319375038147 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INO80E ENSG00000169592 CDS Human protein_coding chr16:30016663 chr16:30016676 synonymous SNV . 0 34 hm5C_associated_SNPs_11619 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13739 DeepMRMD:1;iRNA_m5C:0.999536712157815 13740 chr16 30075267 30075267 1 + G C rs144671145 30075273 + 30075253 30075293 41 ACCACAGATGGCCTGCCGAGCACCCAGGCCTGGGAACTGGA ACCACAGATGGCCTCCCGAGCACCCAGGCCTGGGAACTGGA < 41bp 1 0.271239591324241 1 0.0816890895366669 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ALDOA ENSG00000149925 UTR5 Human protein_coding chr16:30075273 chr16:30075267 . . 0 15 hm5C_associated_SNPs_11620 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13740 DeepMRMD:1;iRNA_m5C:0.999536712157815 13741 chr16 30077131 30077131 1 + C G rs574106376 30077143 + 30077123 30077163 41 GTTCCTCTCGGAACGCGCCGCAGAAGGGGTCCTGGTGACGA GTTCCTCTGGGAACGCGCCGCAGAAGGGGTCCTGGTGACGA < 41bp 1 0.391141867577334 1 0.861567616462708 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ALDOA ENSG00000149925 UTR5 Human protein_coding chr16:30077143 chr16:30077131 . . 0 9 hm5C_associated_SNPs_11621 0 0 1 0 0 Cytosol 1 0.500231643921102 0.276864767074584 0.999536712157796 hm5C_site_13741 DeepMRMD:0.276864767074584;iRNA_m5C:0.999536712157796 13742 chr16 30429848 30429848 1 + G A rs536440990 30429844 + 30429824 30429864 41 GAGAATCCCCTGCCGGGGTCCCTGGAAACAGTGCCCACCCC GAGAATCCCCTGCCGGGGTCCCTGAAAACAGTGCCCACCCC < 41bp 1 0.524857042383846 1 0.363193929195404 experiment 0.950285915232308 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF771 ENSG00000179965 UTR3 Human protein_coding chr16:30429844 chr16:30429848 . . 0 25 hm5C_associated_SNPs_11622 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_13742 DeepMRMD:1;iRNA_m5C:0.999536712157816 13743 chr16 30964940 30964940 1 + A G rs9926903 30964947 + 30964927 30964967 41 CAGCACCGTCCCAAGCTGAGCCAGCCTGCCCACCCCGGCAA CAGCACCGTCCCAGGCTGAGCCAGCCTGCCCACCCCGGCAA < 41bp 1 0.38630544071884 1 0.16358670592308 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30964947 chr16:30964940 synonymous SNV . 0 14 hm5C_associated_SNPs_11624 0 0 1 0 0 chromatin 1 0.500231643300216 1 0.999536713399567 hm5C_site_13743 DeepMRMD:1;iRNA_m5C:0.999536713399567 13744 chr16 30976363 30976363 1 + C G rs201391072 30976360 + 30976340 30976380 41 GGCCTCCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAA GGCCTCCTGCCTCAGAGGCTCCAGCCCCGGAGCCTCCAGAA < 41bp 1 0.170778664435486 1 0.257780462503433 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976360 chr16:30976363 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_11625 0 0 1 0 0 Cytosol 1 0.500231643060197 1 0.999536713879606 hm5C_site_13744 DeepMRMD:1;iRNA_m5C:0.999536713879606 13745 chr16 30976363 30976363 1 + C G rs201391072 30976361 + 30976341 30976381 41 GCCTCCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAAC GCCTCCTGCCTCAGAGGCTCCAGCCCCGGAGCCTCCAGAAC < 41bp 1 0.238819707344888 1 0.156724542379379 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976361 chr16:30976363 nonsynonymous SNV 0.977 3 23 hm5C_associated_SNPs_11626 0 0 1 0 0 Cytosol 1 0.500231643921458 1 0.999536712157083 hm5C_site_13745 DeepMRMD:1;iRNA_m5C:0.999536712157083 13746 chr16 30976363 30976363 1 + C G rs201391072 30976364 + 30976344 30976384 41 TCCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTG TCCTGCCTCAGAGGCTCCAGCCCCGGAGCCTCCAGAACCTG < 41bp 1 0.294899533033884 1 0.167646884918213 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976364 chr16:30976363 nonsynonymous SNV 0.977 3 20 hm5C_associated_SNPs_11627 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13746 DeepMRMD:1;iRNA_m5C:0.999536712157815 13747 chr16 30976363 30976363 1 + C G rs201391072 30976365 + 30976345 30976385 41 CCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTGG CCTGCCTCAGAGGCTCCAGCCCCGGAGCCTCCAGAACCTGG < 41bp 1 0.382604729393545 1 0.346974492073059 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976365 chr16:30976363 nonsynonymous SNV 0.977 3 19 hm5C_associated_SNPs_11628 0 0 1 0 0 Cytosol 1 0.500231644403215 1 0.999536711193571 hm5C_site_13747 DeepMRMD:1;iRNA_m5C:0.999536711193571 13748 chr16 30976363 30976363 1 + C G rs201391072 30976366 + 30976346 30976386 41 CTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTGGT CTGCCTCAGAGGCTCCAGCCCCGGAGCCTCCAGAACCTGGT < 41bp 1 0.585433543859752 1 0.557166755199432 experiment 0.829132912280496 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976366 chr16:30976363 nonsynonymous SNV 0.977 3 18 hm5C_associated_SNPs_11629 0 0 1 0 0 Cytosol 1 0.500231643921092 0.885666489601136 0.999536712157815 hm5C_site_13748 DeepMRMD:0.885666489601136;iRNA_m5C:0.999536712157815 13749 chr16 30976363 30976363 1 + C G rs201391072 30976367 + 30976347 30976387 41 TGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTGGTG TGCCTCAGAGGCTCCAGCCCCGGAGCCTCCAGAACCTGGTG < 41bp 1 0.475917984146113 1 0.804329991340637 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976367 chr16:30976363 nonsynonymous SNV 0.977 3 17 hm5C_associated_SNPs_11630 0 0 1 0 0 Cytosol 1 0.5002316439208 0.391340017318726 0.9995367121584 hm5C_site_13749 DeepMRMD:0.391340017318726;iRNA_m5C:0.9995367121584 13750 chr16 30998266 30998266 1 + G A rs143434186 30998260 + 30998240 30998280 41 ACTTCTACCGCCAGGGCCTGCGCCTGGGAGGTTGGCTCTTC ACTTCTACCGCCAGGGCCTGCGCCTGAGAGGTTGGCTCTTC < 41bp 1 0.647209800427732 1 0.20272421836853 experiment 0.705580399144537 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30998260 chr16:30998266 nonsynonymous SNV 0.582 3 27 hm5C_associated_SNPs_11631 1 0 0 0 1 Ribosome 1 0.500231643921202 1 0.999536712157595 hm5C_site_13750 DeepMRMD:1;iRNA_m5C:0.999536712157595 not specified not specified 13751 chr16 31000061 31000061 1 + C A rs537698128 31000058 + 31000038 31000078 41 GGGTTTGGGGACAGAGTGTCCTTCCTCTGTCCTCTCATCCC GGGTTTGGGGACAGAGTGTCCTTACTCTGTCCTCTCATCCC < 41bp 1 0.220981622236847 1 0.0325913429260254 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HSD3B7 ENSG00000099377 UTR3 Human protein_coding chr16:31000058 chr16:31000061 . . 0 24 hm5C_associated_SNPs_11632 0 0 1 0 0 Ribosome 1 0.500227032319349 1 0.999545935361302 hm5C_site_13751 DeepMRMD:1;iRNA_m5C:0.999545935361302 13752 chr16 31087733 31087733 1 + C T rs201805037 31087730 + 31087710 31087750 41 AGCTCTCTCGGCACCGAGAACTGCTCCATCCATCTCCCAAC AGCTCTCTCGGCACCGAGAACTGTTCCATCCATCTCCCAAC < 41bp 1 0.161770849332751 1 0.0927907526493073 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31087730 chr16:31087733 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_11633 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643928306 1 0.999536712143387 hm5C_site_13752 DeepMRMD:1;iRNA_m5C:0.999536712143387 13753 chr16 31090441 31090441 1 + A G rs34223943 31090458 + 31090438 31090478 41 ACCACTGCAGCTCTCGGAAGCAGAGCTGCTGAATCAGCTGC ACCGCTGCAGCTCTCGGAAGCAGAGCTGCTGAATCAGCTGC < 41bp 1 0.594481231536897 1 0.83229923248291 experiment 0.811037536926206 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31090458 chr16:31090441 synonymous SNV . 0 4 hm5C_associated_SNPs_11634 0 0 0 0 0 Endoplasmic reticulum 1 0.500231787552044 0.33540153503418 0.999536424895912 hm5C_site_13753 DeepMRMD:0.33540153503418;iRNA_m5C:0.999536424895912 13754 chr16 31090452 31090452 1 + C T rs28735175 31090458 + 31090438 31090478 41 ACCACTGCAGCTCTCGGAAGCAGAGCTGCTGAATCAGCTGC ACCACTGCAGCTCTTGGAAGCAGAGCTGCTGAATCAGCTGC < 41bp 1 0.573159986767584 1 0.879263043403625 experiment 0.853680026464831 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31090458 chr16:31090452 nonsynonymous SNV 0.951 1 15 hm5C_associated_SNPs_11635 0 0 0 0 0 Endoplasmic reticulum 1 0.50023205734312 0.24147391319275 0.999535885313761 hm5C_site_13754 DeepMRMD:0.24147391319275;iRNA_m5C:0.999535885313761 13755 chr16 31090452 31090452 1 + C T rs28735175 31090463 + 31090443 31090483 41 TGCAGCTCTCGGAAGCAGAGCTGCTGAATCAGCTGCAGCGG TGCAGCTCTTGGAAGCAGAGCTGCTGAATCAGCTGCAGCGG < 41bp 1 0.404700480150896 1 0.102827072143555 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31090463 chr16:31090452 nonsynonymous SNV 0.951 1 10 hm5C_associated_SNPs_11636 0 0 0 0 0 Endoplasmic reticulum 1 0.500231595107994 1 0.999536809784013 hm5C_site_13755 DeepMRMD:1;iRNA_m5C:0.999536809784013 13756 chr16 31142056 31142056 1 + C T rs138969624 31142076 + 31142056 31142096 41 CCTTTTTGCAGCCAGATGACCAGTATCACCCAAAATGACAT TCTTTTTGCAGCCAGATGACCAGTATCACCCAAAATGACAT < 41bp 1 0.450118311985729 1 0.32211834192276 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KAT8 ENSG00000103510 UTR3 Human protein_coding chr16:31142076 chr16:31142056 . . 0 1 hm5C_associated_SNPs_11637 0 0 1 0 0 Ribosome 1 0.500231643926912 1 0.999536712146175 hm5C_site_13756 DeepMRMD:1;iRNA_m5C:0.999536712146175 13757 chr16 31191482 31191482 1 + A G rs929867 31191478 + 31191458 31191498 41 CTGCTCAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAA CTGCTCAGTCCTCCAGGCGTCGGTGCTCAGCGGTGTTGGAA < 41bp 1 0.460606531178612 1 0.399450600147247 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FUS ENSG00000089280 UTR5 Human protein_coding chr16:31191478 chr16:31191482 . . 0 25 hm5C_associated_SNPs_11638 1 0 1 0 1 Cytosol 1 0.500231643933989 1 0.999536712132022 hm5C_site_13757 DeepMRMD:1;iRNA_m5C:0.999536712132022 Amyotrophic Lateral Sclerosis, Dominant Amyotrophic Lateral Sclerosis, Dominant 13758 chr16 31191482 31191482 1 + A G rs929867 31191483 + 31191463 31191503 41 CAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAACTTCG CAGTCCTCCAGGCGTCGGTGCTCAGCGGTGTTGGAACTTCG < 41bp 1 0.329508905183148 1 0.174594640731812 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUS ENSG00000089280 UTR5 Human protein_coding chr16:31191483 chr16:31191482 . . 0 20 hm5C_associated_SNPs_11639 1 0 1 0 1 Cytosol 1 0.50468470030671 1 0.99063059938658 hm5C_site_13758 DeepMRMD:1;iRNA_m5C:0.99063059938658 Amyotrophic Lateral Sclerosis, Dominant Amyotrophic Lateral Sclerosis, Dominant 13759 chr16 31191489 31191489 1 + G A rs72550864 31191478 + 31191458 31191498 41 CTGCTCAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAA CTGCTCAGTCCTCCAGGCGTCGGTACTCAGCAGTGTTGGAA < 41bp 1 0.549781715972129 1 0.380760610103607 experiment 0.900436568055742 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FUS ENSG00000089280 UTR5 Human protein_coding chr16:31191478 chr16:31191489 . . 0 32 hm5C_associated_SNPs_11640 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_13759 DeepMRMD:1;iRNA_m5C:0.999536712157816 13760 chr16 31191489 31191489 1 + G A rs72550864 31191483 + 31191463 31191503 41 CAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAACTTCG CAGTCCTCCAGGCGTCGGTACTCAGCAGTGTTGGAACTTCG < 41bp 1 0.329485902846685 1 0.208639770746231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUS ENSG00000089280 UTR5 Human protein_coding chr16:31191483 chr16:31191489 . . 0 27 hm5C_associated_SNPs_11641 0 0 1 0 1 Cytosol 1 0.500234795954131 1 0.999530408091738 hm5C_site_13760 DeepMRMD:1;iRNA_m5C:0.999530408091738 13761 chr16 31191497 31191497 1 + A G rs67676356 31191478 + 31191458 31191498 41 CTGCTCAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAA CTGCTCAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGGA < 41bp 1 0.53624462149498 1 0.437256783246994 experiment 0.927510757010039 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FUS ENSG00000089280 UTR5 Human protein_coding chr16:31191478 chr16:31191497 . . 0 40 hm5C_associated_SNPs_11642 1 0 1 0 1 Cytosol 1 0.500231643921095 1 0.99953671215781 hm5C_site_13761 DeepMRMD:1;iRNA_m5C:0.99953671215781 Amyotrophic Lateral Sclerosis, Dominant Amyotrophic Lateral Sclerosis, Dominant 13762 chr16 31191497 31191497 1 + A G rs67676356 31191483 + 31191463 31191503 41 CAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGAACTTCG CAGTCCTCCAGGCGTCGGTACTCAGCGGTGTTGGGACTTCG < 41bp 1 0.34676884714378 1 0.391447156667709 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUS ENSG00000089280 UTR5 Human protein_coding chr16:31191483 chr16:31191497 . . 0 35 hm5C_associated_SNPs_11643 1 0 1 0 1 Cytosol 1 0.500050769009776 1 0.999898461980448 hm5C_site_13762 DeepMRMD:1;iRNA_m5C:0.999898461980448 Amyotrophic Lateral Sclerosis, Dominant Amyotrophic Lateral Sclerosis, Dominant 13763 chr16 31194158 31194158 1 + C G rs185469113 31194160 + 31194140 31194180 41 CGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG CGATTCTCCTGCCTCAGCGTCCTGAGTAGCTGGGATTACAG < 41bp 1 0.105380378128661 1 0.120123267173767 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FUS ENSG00000260304 ncRNA_exonic Human antisense chr16:31194160 chr16:31194158 . . 0 19 hm5C_associated_SNPs_11644 0 0 1 0 0 Cytosol 1 0.500231629936766 1 0.999536740126469 hm5C_site_13763 DeepMRMD:1;iRNA_m5C:0.999536740126469 13764 chr16 31194158 31194158 1 + C G rs185469113 31194161 + 31194141 31194181 41 GATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGG GATTCTCCTGCCTCAGCGTCCTGAGTAGCTGGGATTACAGG < 41bp 1 0.234854975162157 1 0.27725276350975 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FUS ENSG00000260304 ncRNA_exonic Human antisense chr16:31194161 chr16:31194158 . . 0 18 hm5C_associated_SNPs_11645 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13764 DeepMRMD:1;iRNA_m5C:0.999536712157815 13765 chr16 31194158 31194158 1 + C G rs185469113 31194169 + 31194149 31194189 41 TGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTACCTGCT TGCCTCAGCGTCCTGAGTAGCTGGGATTACAGGTACCTGCT < 41bp 1 0.654158005172086 1 0.636756956577301 experiment 0.691683989655828 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FUS ENSG00000260304 ncRNA_exonic Human antisense chr16:31194169 chr16:31194158 . . 0 10 hm5C_associated_SNPs_11646 0 0 1 0 0 Cytosol 1 0.500231643921092 0.726486086845398 0.999536712157815 hm5C_site_13765 DeepMRMD:0.726486086845398;iRNA_m5C:0.999536712157815 13766 chr16 31194182 31194182 1 + T C rs112957921 31194169 + 31194149 31194189 41 TGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTACCTGCT TGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCT < 41bp 1 0.643905175484062 1 0.537235379219055 experiment 0.712189649031877 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FUS ENSG00000260304 ncRNA_intronic Human antisense chr16:31194169 chr16:31194182 . . 0 34 hm5C_associated_SNPs_11647 0 0 1 0 0 Cytosol 1 0.500231643921092 0.92552924156189 0.999536712157815 hm5C_site_13766 DeepMRMD:0.92552924156189;iRNA_m5C:0.999536712157815 13767 chr16 31235548 31235548 1 + G C rs58585879 31235556 + 31235536 31235576 41 GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG GCACCCGAGCCTCGTGGTGTCTTCCTCTGGCCGCCGCGTGG < 41bp 1 0.23917969825173 1 0.058073878288269 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235556 chr16:31235548 synonymous SNV . 0 13 hm5C_associated_SNPs_11648 0 0 1 0 1 exosome 1 0.500231643481657 1 0.999536713036686 hm5C_site_13767 DeepMRMD:1;iRNA_m5C:0.999536713036686 13768 chr16 31470908 31470908 1 + G A rs375181224 31470910 + 31470890 31470930 41 CCTCGCGCAGCTCGCGGCGGCGGCCGGGGAGGCTCTGGGTG CCTCGCGCAGCTCGCGGCAGCGGCCGGGGAGGCTCTGGGTG < 41bp 1 0.530682280408958 1 0.637219250202179 experiment 0.938635439182083 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31470910 chr16:31470908 synonymous SNV . 0 19 hm5C_associated_SNPs_11649 0 0 0 0 0 cytosol 1 0.500231643921093 0.725561499595642 0.999536712157814 hm5C_site_13768 DeepMRMD:0.725561499595642;iRNA_m5C:0.999536712157814 13769 chr16 31473275 31473275 1 + A G rs35923277 31473271 + 31473251 31473291 41 CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC CTTCAGTGCATGAAGACAGACAGCGTCCAGAACCGAACGGC < 41bp 1 0.546172006295583 1 0.692781388759613 experiment 0.907655987408835 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31473271 chr16:31473275 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_11650 0 0 1 0 2 cytosol 1 0.500231637172078 0.614437222480774 0.999536725655845 hm5C_site_13769 DeepMRMD:0.614437222480774;iRNA_m5C:0.999536725655845 13770 chr16 46963340 46963340 1 + G A rs141523762 46963358 + 46963338 46963378 41 GCGGTGTGAAGCATCCGGTCCTTTGAACAGAAGGGCCTGGA GCAGTGTGAAGCATCCGGTCCTTTGAACAGAAGGGCCTGGA < 41bp 1 0.112613872524304 1 0.0591235458850861 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPT2 ENSG00000166123 UTR3 Human protein_coding chr16:46963358 chr16:46963340 . . 0 3 hm5C_associated_SNPs_11652 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13770 DeepMRMD:1;iRNA_m5C:0.999536712157815 13771 chr16 46965179 46965179 1 + A G rs8728 46965175 + 46965155 46965195 41 AATGGCTCTGCTGGAAATTTCTATAAATAAAATGTCCAAAA AATGGCTCTGCTGGAAATTTCTATGAATAAAATGTCCAAAA < 41bp 1 0.356266770918189 1 0.420539408922195 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPT2 ENSG00000166123 UTR3 Human protein_coding chr16:46965175 chr16:46965179 . . 0 25 hm5C_associated_SNPs_11654 0 0 1 0 0 Ribosome 1 0.500231648170755 1 0.99953670365849 hm5C_site_13771 DeepMRMD:1;iRNA_m5C:0.99953670365849 13772 chr16 47734146 47734146 1 + A C rs530757062 47734151 + 47734131 47734171 41 CATGCCTTTAAACCCAGCTACTGAGGAGGCTGAGGCATGAG CATGCCTTTAAACCCCGCTACTGAGGAGGCTGAGGCATGAG < 41bp 1 0.649179529077315 1 0.23327225446701 experiment 0.70164094184537 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHKB ENSG00000102893 UTR3 Human protein_coding chr16:47734151 chr16:47734146 . . 0 16 hm5C_associated_SNPs_11655 0 0 0 0 0 Cytosol 1 0.500231643921101 1 0.999536712157799 hm5C_site_13772 DeepMRMD:1;iRNA_m5C:0.999536712157799 13773 chr16 50139208 50139208 1 + A G rs575562698 50139197 + 50139177 50139217 41 TTGAGGTCAGGAGTTTGAGGCCAGCCTGGCCAACATGGTGA TTGAGGTCAGGAGTTTGAGGCCAGCCTGGCCGACATGGTGA < 41bp 1 0.45697169148141 1 0.0616526901721954 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEATR3 ENSG00000260381 ncRNA_intronic Human antisense chr16:50139197 chr16:50139208 . . 0 32 hm5C_associated_SNPs_11656 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_13773 DeepMRMD:1;iRNA_m5C:0.999536712157815 13774 chr16 50139208 50139208 1 + A G rs575562698 50139198 + 50139178 50139218 41 TGAGGTCAGGAGTTTGAGGCCAGCCTGGCCAACATGGTGAA TGAGGTCAGGAGTTTGAGGCCAGCCTGGCCGACATGGTGAA < 41bp 1 0.635493798220477 1 0.111322313547134 experiment 0.729012403559045 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEATR3 ENSG00000260381 ncRNA_intronic Human antisense chr16:50139198 chr16:50139208 . . 0 31 hm5C_associated_SNPs_11657 0 0 1 0 0 Ribosome 1 0.5002316439164 1 0.9995367121672 hm5C_site_13774 DeepMRMD:1;iRNA_m5C:0.9995367121672 13775 chr16 50139208 50139208 1 + A G rs575562698 50139201 + 50139181 50139221 41 GGTCAGGAGTTTGAGGCCAGCCTGGCCAACATGGTGAAACC GGTCAGGAGTTTGAGGCCAGCCTGGCCGACATGGTGAAACC < 41bp 1 0.586240751256329 1 0.0929961502552032 experiment 0.827518497487343 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEATR3 ENSG00000260381 ncRNA_intronic Human antisense chr16:50139201 chr16:50139208 . . 0 28 hm5C_associated_SNPs_11658 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13775 DeepMRMD:1;iRNA_m5C:0.999536712157815 13776 chr16 50139208 50139208 1 + A G rs575562698 50139206 + 50139186 50139226 41 GGAGTTTGAGGCCAGCCTGGCCAACATGGTGAAACCGCATG GGAGTTTGAGGCCAGCCTGGCCGACATGGTGAAACCGCATG < 41bp 1 0.296840348665414 1 0.0650923848152161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEATR3 ENSG00000260381 ncRNA_intronic Human antisense chr16:50139206 chr16:50139208 . . 0 23 hm5C_associated_SNPs_11660 0 0 1 0 0 Ribosome 1 0.50023164391322 1 0.99953671217356 hm5C_site_13776 DeepMRMD:1;iRNA_m5C:0.99953671217356 13777 chr16 50139222 50139222 1 + G A rs116770385 50139206 + 50139186 50139226 41 GGAGTTTGAGGCCAGCCTGGCCAACATGGTGAAACCGCATG GGAGTTTGAGGCCAGCCTGGCCAACATGGTGAAACCACATG < 41bp 1 0.194240467996079 1 0.0874258577823639 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEATR3 ENSG00000260381 ncRNA_intronic Human antisense chr16:50139206 chr16:50139222 . . 0 37 hm5C_associated_SNPs_11663 0 0 1 0 0 Ribosome 1 0.500231643921033 1 0.999536712157933 hm5C_site_13777 DeepMRMD:1;iRNA_m5C:0.999536712157933 13778 chr16 50139264 50139264 1 + T C rs563553280 50139256 + 50139236 50139276 41 GGTGGCACATGCCTGTGATCCCAGCTACTCGGGAGGCTGAG GGTGGCACATGCCTGTGATCCCAGCTACCCGGGAGGCTGAG < 41bp 1 0.573679376175162 1 0.699900388717651 experiment 0.852641247649677 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEATR3 ENSG00000260381 ncRNA_intronic Human antisense chr16:50139256 chr16:50139264 . . 0 29 hm5C_associated_SNPs_11665 0 0 0 0 0 Ribosome 1 0.500230365218407 0.600199222564698 0.999539269563187 hm5C_site_13778 DeepMRMD:0.600199222564698;iRNA_m5C:0.999539269563187 13779 chr16 50139264 50139264 1 + T C rs563553280 50139260 + 50139240 50139280 41 GCACATGCCTGTGATCCCAGCTACTCGGGAGGCTGAGGGAG GCACATGCCTGTGATCCCAGCTACCCGGGAGGCTGAGGGAG < 41bp 1 0.440001967093919 1 0.173196226358414 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEATR3 ENSG00000260381 ncRNA_intronic Human antisense chr16:50139260 chr16:50139264 . . 0 25 hm5C_associated_SNPs_11666 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13779 DeepMRMD:1;iRNA_m5C:0.999536712157815 13780 chr16 50139789 50139789 1 + C G rs575653767 50139770 + 50139750 50139790 41 GGGATTACAGGCATGAGCCACCGTGCCTGGCCAGAAACTCT GGGATTACAGGCATGAGCCACCGTGCCTGGCCAGAAACTGT < 41bp 1 0.0672339110996547 1 0.635998427867889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control HEATR3 ENSG00000260381 ncRNA_intronic Human antisense chr16:50139770 chr16:50139789 . . 0 40 hm5C_associated_SNPs_11668 0 0 1 0 0 Ribosome 1 0.500231258364321 0.728003144264222 0.999537483271358 hm5C_site_13780 DeepMRMD:0.728003144264222;iRNA_m5C:0.999537483271358 13781 chr16 50139789 50139789 1 + C G rs575653767 50139771 + 50139751 50139791 41 GGATTACAGGCATGAGCCACCGTGCCTGGCCAGAAACTCTT GGATTACAGGCATGAGCCACCGTGCCTGGCCAGAAACTGTT < 41bp 1 0.143235020033943 1 0.352661907672882 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control HEATR3 ENSG00000260381 ncRNA_intronic Human antisense chr16:50139771 chr16:50139789 . . 0 39 hm5C_associated_SNPs_11669 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13781 DeepMRMD:1;iRNA_m5C:0.999536712157815 13782 chr16 50139789 50139789 1 + C G rs575653767 50139776 + 50139756 50139796 41 ACAGGCATGAGCCACCGTGCCTGGCCAGAAACTCTTTTTTA ACAGGCATGAGCCACCGTGCCTGGCCAGAAACTGTTTTTTA < 41bp 1 0.393843904544438 1 0.110273867845535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HEATR3 ENSG00000260381 ncRNA_intronic Human antisense chr16:50139776 chr16:50139789 . . 0 34 hm5C_associated_SNPs_11670 0 0 1 0 0 Ribosome 1 0.500235686593911 1 0.999528626812177 hm5C_site_13782 DeepMRMD:1;iRNA_m5C:0.999528626812177 13783 chr16 50261755 50261755 1 + C T rs75174826 50261765 + 50261745 50261785 41 GTTAGGATTCCGATGCAACACCATGCAAAACCCCGAAACAG GTTAGGATTCTGATGCAACACCATGCAAAACCCCGAAACAG < 41bp 1 0.256541017553815 1 0.64474630355835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50261765 chr16:50261755 synonymous SNV . 0 11 hm5C_associated_SNPs_11671 0 0 1 1 1 Ribosome 1 0.500230327762785 0.7105073928833 0.99953934447443 hm5C_site_13783 DeepMRMD:0.7105073928833;iRNA_m5C:0.99953934447443 13784 chr16 50813910 50813910 1 + C T rs75757530 50813901 + 50813881 50813921 41 CCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC CCTCCTTTCTATGGGGTAATCCGTTGGATTGGTCAGCCACC < 41bp 1 0.274417086084876 1 0.170062482357025 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CYLD ENSG00000083799 CDS Human protein_coding chr16:50813901 chr16:50813910 synonymous SNV . 0 30 hm5C_associated_SNPs_11673 3 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13784 DeepMRMD:1;iRNA_m5C:0.999536712157815 Cylindromatosis, familial Cylindromatosis, familial 13785 chr16 53468630 53468630 1 + C A rs79388287 53468610 + 53468590 53468630 41 CCACCCCTCAGATCCAGCAGCGGTTCGACGAGCTGTGCAGC CCACCCCTCAGATCCAGCAGCGGTTCGACGAGCTGTGCAGA < 41bp 1 0.301970207320388 1 0.351580858230591 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBL2 ENSG00000103479 CDS Human protein_coding chr16:53468610 chr16:53468630 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_11674 0 0 1 0 1 Ribosome 1 0.50023164374943 1 0.99953671250114 hm5C_site_13785 DeepMRMD:1;iRNA_m5C:0.99953671250114 13786 chr16 53738094 53738094 1 + A G rs199561185 53738107 + 53738087 53738127 41 TAGTGGCAGCATGAAGCGCACCCCGACTGCCGAGGAACGAG TAGTGGCGGCATGAAGCGCACCCCGACTGCCGAGGAACGAG < 41bp 1 0.376841820288506 1 0.33907675743103 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FTO ENSG00000140718 UTR5 Human protein_coding chr16:53738107 chr16:53738094 . . 0 8 hm5C_associated_SNPs_11675 0 0 1 0 1 Nucleus 1 0.500231643918018 1 0.999536712163965 hm5C_site_13786 DeepMRMD:1;iRNA_m5C:0.999536712163965 13787 chr16 53738114 53738114 1 + T C rs73609956 53738107 + 53738087 53738127 41 TAGTGGCAGCATGAAGCGCACCCCGACTGCCGAGGAACGAG TAGTGGCAGCATGAAGCGCACCCCGACCGCCGAGGAACGAG < 41bp 1 0.379662520612815 1 0.386025726795197 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FTO ENSG00000140718 CDS Human protein_coding chr16:53738107 chr16:53738114 synonymous SNV . 0 28 hm5C_associated_SNPs_11676 4 0 1 0 1 Nucleus 1 0.500231884222594 1 0.999536231554812 hm5C_site_13787 DeepMRMD:1;iRNA_m5C:0.999536231554812 Meckel-Gruber syndrome Meckel-Gruber syndrome 13788 chr16 54147993 54147993 1 + G A rs534016099 54148004 + 54147984 54148024 41 GGGATTACAGGCGTGAGCCACCGCGCCAAGCCAAGGTCTGC GGGATTACAAGCGTGAGCCACCGCGCCAAGCCAAGGTCTGC < 41bp 1 0.47897226532937 1 0.108999371528625 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FTO ENSG00000214696 ncRNA_exonic Human other chr16:54148004 chr16:54147993 . . 0 10 hm5C_associated_SNPs_11678 0 0 1 0 0 Nucleus 1 0.500231653690352 1 0.999536692619295 hm5C_site_13788 DeepMRMD:1;iRNA_m5C:0.999536692619295 13789 chr16 54147993 54147993 1 + G A rs534016099 54148005 + 54147985 54148025 41 GGATTACAGGCGTGAGCCACCGCGCCAAGCCAAGGTCTGCA GGATTACAAGCGTGAGCCACCGCGCCAAGCCAAGGTCTGCA < 41bp 1 0.605237036306788 1 0.304873883724213 experiment 0.789525927386424 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FTO ENSG00000214696 ncRNA_exonic Human other chr16:54148005 chr16:54147993 . . 0 9 hm5C_associated_SNPs_11679 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_13789 DeepMRMD:1;iRNA_m5C:0.999536712157815 Nonsyndromic cleft lip with cleft palate 13790 chr16 54148007 54148007 1 + C T rs147409759 54148004 + 54147984 54148024 41 GGGATTACAGGCGTGAGCCACCGCGCCAAGCCAAGGTCTGC GGGATTACAGGCGTGAGCCACCGTGCCAAGCCAAGGTCTGC < 41bp 1 0.332791662972315 1 0.162657856941223 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FTO ENSG00000214696 ncRNA_exonic Human other chr16:54148004 chr16:54148007 . . 0 24 hm5C_associated_SNPs_11682 1 0 1 0 0 Nucleus 1 0.500231640075207 1 0.999536719849586 hm5C_site_13790 DeepMRMD:1;iRNA_m5C:0.999536719849586 Growth retardation, developmental delay, coarse facies, and early death Growth retardation, developmental delay, coarse facies, and early death 13791 chr16 54148007 54148007 1 + C T rs147409759 54148005 + 54147985 54148025 41 GGATTACAGGCGTGAGCCACCGCGCCAAGCCAAGGTCTGCA GGATTACAGGCGTGAGCCACCGTGCCAAGCCAAGGTCTGCA < 41bp 1 0.437310372819705 1 0.275184869766235 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FTO ENSG00000214696 ncRNA_exonic Human other chr16:54148005 chr16:54148007 . . 0 23 hm5C_associated_SNPs_11683 1 0 1 0 0 Nucleus 1 0.500231644575933 1 0.999536710848133 hm5C_site_13791 DeepMRMD:1;iRNA_m5C:0.999536710848133 Growth retardation, developmental delay, coarse facies, and early death Growth retardation, developmental delay, coarse facies, and early death 13792 chr16 55523622 55523622 1 + C T rs41513346 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCTTGGGCAAC < 41bp 1 0.0392619562493514 1 0.321379691362381 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523622 synonymous SNV . 0 33 hm5C_associated_SNPs_11686 1 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_13792 DeepMRMD:1;iRNA_m5C:0.999536712157814 Multicentric Osteolysis-Nodulosis-Arthropathy (MONA) Spectrum Disorders Multicentric Osteolysis-Nodulosis-Arthropathy (MONA) Spectrum Disorders 13793 chr16 55527073 55527073 1 + C T rs17859943 55527074 + 55527054 55527094 41 CAGGTGTTCTCCCCAGGGGCCTCTCCTGACATTGACCTTGG CAGGTGTTCTCCCCAGGGGTCTCTCCTGACATTGACCTTGG < 41bp 1 0.122666675755009 1 0.0997463762760162 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55527074 chr16:55527073 nonsynonymous SNV 0.905 0 20 hm5C_associated_SNPs_11687 1 0 0 0 1 Endoplasmic reticulum 1 0.500231643814573 1 0.999536712370855 hm5C_site_13793 DeepMRMD:1;iRNA_m5C:0.999536712370855 Multicentric Osteolysis-Nodulosis-Arthropathy (MONA) Spectrum Disorders Multicentric Osteolysis-Nodulosis-Arthropathy (MONA) Spectrum Disorders 13794 chr16 55543050 55543050 1 + G T rs150333127 55543062 + 55543042 55543082 41 GCTGCAGCGCCCGCGTAGATCGCTTCGGCCGGGTTCTACGC GCTGCAGCTCCCGCGTAGATCGCTTCGGCCGGGTTCTACGC < 41bp 1 0.651485076824409 1 0.0963338613510132 experiment 0.697029846351181 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPCAT2 ENSG00000087253 UTR5 Human protein_coding chr16:55543062 chr16:55543050 . . 0 9 hm5C_associated_SNPs_11688 0 0 1 0 0 Ribosome 1 0.500231643915106 1 0.999536712169787 hm5C_site_13794 DeepMRMD:1;iRNA_m5C:0.999536712169787 13795 chr16 55543073 55543073 1 + G C rs17302903 55543062 + 55543042 55543082 41 GCTGCAGCGCCCGCGTAGATCGCTTCGGCCGGGTTCTACGC GCTGCAGCGCCCGCGTAGATCGCTTCGGCCGCGTTCTACGC < 41bp 1 0.671719772618354 1 0.106618076562881 experiment 0.656560454763291 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPCAT2 ENSG00000087253 UTR5 Human protein_coding chr16:55543062 chr16:55543073 . . 0 32 hm5C_associated_SNPs_11689 0 0 1 0 0 Ribosome 1 0.500231780229996 1 0.999536439540007 hm5C_site_13795 DeepMRMD:1;iRNA_m5C:0.999536439540007 13796 chr16 56659783 56659783 1 + G A rs141266321 56659789 + 56659769 56659809 41 CCCCAACTGCTCTTGCGCCACTGGTAAGGGAAGCTCTGCGC CCCCAACTGCTCTTACGCCACTGGTAAGGGAAGCTCTGCGC < 41bp 1 0.654370217915567 1 0.297144025564194 experiment 0.691259564168866 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56659789 chr16:56659783 nonsynonymous SNV 0.986 1 15 hm5C_associated_SNPs_11690 0 0 1 0 1 Ribosome 1 0.500231607935274 1 0.999536784129452 hm5C_site_13796 DeepMRMD:1;iRNA_m5C:0.999536784129452 13797 chr16 56660768 56660768 1 + T A rs140772238 56660787 + 56660767 56660807 41 CTCTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTG CACTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTG < 41bp 1 0.413510074883246 1 0.15222954750061 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MT1E ENSG00000169715 UTR3 Human protein_coding chr16:56660787 chr16:56660768 . . 0 2 hm5C_associated_SNPs_11691 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13797 DeepMRMD:1;iRNA_m5C:0.999536712157815 13798 chr16 56660768 56660768 1 + T A rs140772238 56660788 + 56660768 56660808 41 TCTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTGC ACTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTGC < 41bp 1 0.698842773193384 1 0.59883725643158 experiment 0.602314453613232 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MT1E ENSG00000169715 UTR3 Human protein_coding chr16:56660788 chr16:56660768 . . 0 1 hm5C_associated_SNPs_11692 0 0 0 0 0 Ribosome 1 0.500231643920881 0.80232548713684 0.999536712158238 hm5C_site_13798 DeepMRMD:0.80232548713684;iRNA_m5C:0.999536712158238 13799 chr16 56660906 56660906 1 + G T rs708274 56660892 + 56660872 56660912 41 TGCTGTGCCTGATGTGGGAACAGCTCTTCTCCCAGATGTAA TGCTGTGCCTGATGTGGGAACAGCTCTTCTCCCATATGTAA < 41bp 1 0.483069576179489 1 0.260388344526291 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MT1E ENSG00000169715 UTR3 Human protein_coding chr16:56660892 chr16:56660906 . . 0 35 hm5C_associated_SNPs_11693 0 0 1 0 0 Ribosome 1 0.500231643921171 1 0.999536712157657 hm5C_site_13799 DeepMRMD:1;iRNA_m5C:0.999536712157657 13800 chr16 56660906 56660906 1 + G T rs708274 56660895 + 56660875 56660915 41 TGTGCCTGATGTGGGAACAGCTCTTCTCCCAGATGTAAATA TGTGCCTGATGTGGGAACAGCTCTTCTCCCATATGTAAATA < 41bp 1 0.313658936378344 1 0.179784297943115 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MT1E ENSG00000169715 UTR3 Human protein_coding chr16:56660895 chr16:56660906 . . 0 32 hm5C_associated_SNPs_11694 0 0 1 0 0 Ribosome 1 0.500231643938565 1 0.999536712122869 hm5C_site_13800 DeepMRMD:1;iRNA_m5C:0.999536712122869 13801 chr16 56966071 56966071 1 + T C rs37024 56966070 + 56966050 56966090 41 GCGCGCCCCAGAGACGTGAACTGTCGTTGCAGAGATTGCGG GCGCGCCCCAGAGACGTGAACCGTCGTTGCAGAGATTGCGG < 41bp 1 0.332631237036373 1 0.23581463098526 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HERPUD1 ENSG00000051108 UTR5 Human protein_coding chr16:56966070 chr16:56966071 . . 0 22 hm5C_associated_SNPs_11695 0 0 1 0 0 Ribosome 1 0.500229702106994 1 0.999540595786012 hm5C_site_13801 DeepMRMD:1;iRNA_m5C:0.999540595786012 13802 chr16 56966072 56966072 1 + G C rs531852378 56966070 + 56966050 56966090 41 GCGCGCCCCAGAGACGTGAACTGTCGTTGCAGAGATTGCGG GCGCGCCCCAGAGACGTGAACTCTCGTTGCAGAGATTGCGG < 41bp 1 0.428457886147887 1 0.273560881614685 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HERPUD1 ENSG00000051108 UTR5 Human protein_coding chr16:56966070 chr16:56966072 . . 0 23 hm5C_associated_SNPs_11696 0 0 1 0 0 Ribosome 1 0.50020568246764 1 0.999588635064719 hm5C_site_13802 DeepMRMD:1;iRNA_m5C:0.999588635064719 13803 chr16 56966079 56966079 1 + C T rs571539038 56966070 + 56966050 56966090 41 GCGCGCCCCAGAGACGTGAACTGTCGTTGCAGAGATTGCGG GCGCGCCCCAGAGACGTGAACTGTCGTTGTAGAGATTGCGG < 41bp 1 0.496936054207373 1 0.232809841632843 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HERPUD1 ENSG00000051108 UTR5 Human protein_coding chr16:56966070 chr16:56966079 . . 0 30 hm5C_associated_SNPs_11697 0 0 1 0 0 Ribosome 1 0.500231725761341 1 0.999536548477318 hm5C_site_13803 DeepMRMD:1;iRNA_m5C:0.999536548477318 13804 chr16 57126540 57126540 1 + G A rs561444256 57126558 + 57126538 57126578 41 TGGGAGCGCACGCGAGCGGGCCGTGGCCGCGCGGGCAGCGC TGAGAGCGCACGCGAGCGGGCCGTGGCCGCGCGGGCAGCGC < 41bp 1 0.638950149262687 1 0.294661104679108 experiment 0.722099701474626 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 UTR5 Human protein_coding chr16:57126558 chr16:57126540 . . 0 3 hm5C_associated_SNPs_11698 0 0 1 0 0 chromatin 1 0.500231644070375 1 0.999536711859251 hm5C_site_13804 DeepMRMD:1;iRNA_m5C:0.999536711859251 13805 chr16 57333890 57333890 1 + C G rs184840621 57333873 + 57333853 57333893 41 CTCCTAGGAAGTCAGGATGGCCGAGCGGTCTAAGGCGCTGC CTCCTAGGAAGTCAGGATGGCCGAGCGGTCTAAGGCGGTGC < 41bp 1 0.347919511517351 1 0.121493428945541 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333873 chr16:57333890 . . 0 38 hm5C_associated_SNPs_11702 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13805 DeepMRMD:1;iRNA_m5C:0.999536712157815 13806 chr16 57333890 57333890 1 + C G rs184840621 57333874 + 57333854 57333894 41 TCCTAGGAAGTCAGGATGGCCGAGCGGTCTAAGGCGCTGCG TCCTAGGAAGTCAGGATGGCCGAGCGGTCTAAGGCGGTGCG < 41bp 1 0.537600489772472 1 0.728274345397949 experiment 0.924799020455056 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333874 chr16:57333890 . . 0 37 hm5C_associated_SNPs_11703 0 0 1 0 0 unknown 1 0.500231643921093 0.543451309204102 0.999536712157815 hm5C_site_13806 DeepMRMD:0.543451309204102;iRNA_m5C:0.999536712157815 13807 chr16 57333890 57333890 1 + C G rs184840621 57333893 + 57333873 57333913 41 CCGAGCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCCCC CCGAGCGGTCTAAGGCGGTGCGTTCAGGTCGCAGTCTCCCC < 41bp 1 0.0653614220581025 1 0.039654940366745 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333893 chr16:57333890 . . 0 18 hm5C_associated_SNPs_11704 0 0 1 0 0 unknown 1 0.500231644326237 1 0.999536711347526 hm5C_site_13807 DeepMRMD:1;iRNA_m5C:0.999536711347526 13808 chr16 57333890 57333890 1 + C G rs184840621 57333904 + 57333884 57333924 41 AAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGG AAGGCGGTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGG < 41bp 1 0.23576329427367 1 0.183544456958771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333904 chr16:57333890 . . 0 7 hm5C_associated_SNPs_11706 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13808 DeepMRMD:1;iRNA_m5C:0.999536712157815 13809 chr16 57333890 57333890 1 + C G rs184840621 57333908 + 57333888 57333928 41 CGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTC CGGTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTC < 41bp 1 0.532763153599004 1 0.769119024276733 experiment 0.934473692801992 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333908 chr16:57333890 . . 0 3 hm5C_associated_SNPs_11707 0 0 1 0 0 unknown 1 0.500231643921057 0.461761951446534 0.999536712157886 hm5C_site_13809 DeepMRMD:0.461761951446534;iRNA_m5C:0.999536712157886 13810 chr16 57333902 57333902 1 + C G rs149619861 57333893 + 57333873 57333913 41 CCGAGCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCCCC CCGAGCGGTCTAAGGCGCTGCGTTCAGGTGGCAGTCTCCCC < 41bp 1 0.0638421632036579 1 0.0848139524459839 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333893 chr16:57333902 . . 0 30 hm5C_associated_SNPs_11709 0 0 1 0 0 unknown 1 0.50023164392103 1 0.99953671215794 hm5C_site_13810 DeepMRMD:1;iRNA_m5C:0.99953671215794 13811 chr16 57333902 57333902 1 + C G rs149619861 57333904 + 57333884 57333924 41 AAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGG AAGGCGCTGCGTTCAGGTGGCAGTCTCCCCTGGAGGCGTGG < 41bp 1 0.191170061329223 1 0.216980516910553 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333904 chr16:57333902 . . 0 19 hm5C_associated_SNPs_11711 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13811 DeepMRMD:1;iRNA_m5C:0.999536712157815 13812 chr16 57333902 57333902 1 + C G rs149619861 57333908 + 57333888 57333928 41 CGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTC CGCTGCGTTCAGGTGGCAGTCTCCCCTGGAGGCGTGGGTTC < 41bp 1 0.518318767457642 1 0.818956792354584 experiment 0.963362465084715 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333908 chr16:57333902 . . 0 15 hm5C_associated_SNPs_11712 0 0 1 0 0 unknown 1 0.500231643921208 0.362086415290832 0.999536712157583 hm5C_site_13812 DeepMRMD:0.362086415290832;iRNA_m5C:0.999536712157583 13813 chr16 57333902 57333902 1 + C G rs149619861 57333911 + 57333891 57333931 41 TGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAA TGCGTTCAGGTGGCAGTCTCCCCTGGAGGCGTGGGTTCGAA < 41bp 1 0.305553420600832 1 0.24489238858223 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333911 chr16:57333902 . . 0 12 hm5C_associated_SNPs_11713 0 0 1 0 0 unknown 1 0.500231643923248 1 0.999536712153503 hm5C_site_13813 DeepMRMD:1;iRNA_m5C:0.999536712153503 13814 chr16 57333902 57333902 1 + C G rs149619861 57333912 + 57333892 57333932 41 GCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAAT GCGTTCAGGTGGCAGTCTCCCCTGGAGGCGTGGGTTCGAAT < 41bp 1 0.371512208435152 1 0.236252754926682 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333912 chr16:57333902 . . 0 11 hm5C_associated_SNPs_11714 0 0 1 0 0 unknown 1 0.500231643940576 1 0.999536712118848 hm5C_site_13814 DeepMRMD:1;iRNA_m5C:0.999536712118848 13815 chr16 57333911 57333911 1 + C A rs144318503 57333893 + 57333873 57333913 41 CCGAGCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCCCC CCGAGCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCACC < 41bp 1 0.0480079682138938 1 0.0629796981811523 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333893 chr16:57333911 . . 0 39 hm5C_associated_SNPs_11716 0 0 1 0 0 unknown 1 0.500231649259501 1 0.999536701480999 hm5C_site_13815 DeepMRMD:1;iRNA_m5C:0.999536701480999 13816 chr16 57333911 57333911 1 + C A rs144318503 57333897 + 57333877 57333917 41 GCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGA GCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCACCTGGA < 41bp 1 0.653488409565306 1 0.882558465003967 experiment 0.693023180869389 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333897 chr16:57333911 . . 0 35 hm5C_associated_SNPs_11717 0 0 1 0 0 unknown 1 0.50082776851435 0.234883069992066 0.998344462971299 hm5C_site_13816 DeepMRMD:0.234883069992066;iRNA_m5C:0.998344462971299 13817 chr16 57333911 57333911 1 + C A rs144318503 57333904 + 57333884 57333924 41 AAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGG AAGGCGCTGCGTTCAGGTCGCAGTCTCACCTGGAGGCGTGG < 41bp 1 0.222995960193701 1 0.146806240081787 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333904 chr16:57333911 . . 0 28 hm5C_associated_SNPs_11718 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13817 DeepMRMD:1;iRNA_m5C:0.999536712157815 13818 chr16 57333911 57333911 1 + C A rs144318503 57333908 + 57333888 57333928 41 CGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTC CGCTGCGTTCAGGTCGCAGTCTCACCTGGAGGCGTGGGTTC < 41bp 1 0.459608990687626 1 0.469691693782806 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333908 chr16:57333911 . . 0 24 hm5C_associated_SNPs_11719 0 0 1 0 0 unknown 1 0.500231643921912 1 0.999536712156175 hm5C_site_13818 DeepMRMD:1;iRNA_m5C:0.999536712156175 13819 chr16 57333911 57333911 1 + C A rs144318503 57333912 + 57333892 57333932 41 GCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAAT GCGTTCAGGTCGCAGTCTCACCTGGAGGCGTGGGTTCGAAT < 41bp 1 0.348542809922303 1 0.110544770956039 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333912 chr16:57333911 . . 0 20 hm5C_associated_SNPs_11720 0 0 1 0 0 unknown 1 0.500231644042268 1 0.999536711915464 hm5C_site_13819 DeepMRMD:1;iRNA_m5C:0.999536711915464 13820 chr16 57333911 57333911 1 + C A rs144318503 57333928 + 57333908 57333948 41 CTCCCCTGGAGGCGTGGGTTCGAATCCCACTTCTGACAAGC CTCACCTGGAGGCGTGGGTTCGAATCCCACTTCTGACAAGC < 41bp 1 0.244314495925175 1 0.376599043607712 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333928 chr16:57333911 . . 0 4 hm5C_associated_SNPs_11722 0 0 1 0 0 unknown 1 0.500231606371897 1 0.999536787256207 hm5C_site_13820 DeepMRMD:1;iRNA_m5C:0.999536787256207 13821 chr16 57333921 57333921 1 + G A rs577579670 57333904 + 57333884 57333924 41 AAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGG AAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCATGG < 41bp 1 0.213325022122144 1 0.141841113567352 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333904 chr16:57333921 . . 0 38 hm5C_associated_SNPs_11723 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_13821 DeepMRMD:1;iRNA_m5C:0.999536712157818 13822 chr16 57333921 57333921 1 + G A rs577579670 57333908 + 57333888 57333928 41 CGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTC CGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCATGGGTTC < 41bp 1 0.492822818699671 1 0.731073439121246 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333908 chr16:57333921 . . 0 34 hm5C_associated_SNPs_11724 0 0 1 0 0 unknown 1 0.500231643843707 0.537853121757508 0.999536712312586 hm5C_site_13822 DeepMRMD:0.537853121757508;iRNA_m5C:0.999536712312586 13823 chr16 57333921 57333921 1 + G A rs577579670 57333911 + 57333891 57333931 41 TGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAA TGCGTTCAGGTCGCAGTCTCCCCTGGAGGCATGGGTTCGAA < 41bp 1 0.313468077111602 1 0.148237019777298 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333911 chr16:57333921 . . 0 31 hm5C_associated_SNPs_11725 0 0 1 0 0 unknown 1 0.500231643922628 1 0.999536712154745 hm5C_site_13823 DeepMRMD:1;iRNA_m5C:0.999536712154745 13824 chr16 57333921 57333921 1 + G A rs577579670 57333912 + 57333892 57333932 41 GCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAAT GCGTTCAGGTCGCAGTCTCCCCTGGAGGCATGGGTTCGAAT < 41bp 1 0.334037942860056 1 0.164517343044281 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333912 chr16:57333921 . . 0 30 hm5C_associated_SNPs_11726 0 0 1 0 0 unknown 1 0.500231643839858 1 0.999536712320285 hm5C_site_13824 DeepMRMD:1;iRNA_m5C:0.999536712320285 13825 chr16 57333921 57333921 1 + G A rs577579670 57333928 + 57333908 57333948 41 CTCCCCTGGAGGCGTGGGTTCGAATCCCACTTCTGACAAGC CTCCCCTGGAGGCATGGGTTCGAATCCCACTTCTGACAAGC < 41bp 1 0.205433044799702 1 0.212177813053131 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333928 chr16:57333921 . . 0 14 hm5C_associated_SNPs_11728 0 0 1 0 0 unknown 1 0.500231643921135 1 0.999536712157729 hm5C_site_13825 DeepMRMD:1;iRNA_m5C:0.999536712157729 13826 chr16 57333921 57333921 1 + G A rs577579670 57333934 + 57333914 57333954 41 TGGAGGCGTGGGTTCGAATCCCACTTCTGACAAGCGCTCTT TGGAGGCATGGGTTCGAATCCCACTTCTGACAAGCGCTCTT < 41bp 1 0.183307139334433 1 0.0906756222248077 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333934 chr16:57333921 . . 0 8 hm5C_associated_SNPs_11729 0 0 1 0 0 unknown 1 0.500231643722163 1 0.999536712555674 hm5C_site_13826 DeepMRMD:1;iRNA_m5C:0.999536712555674 13827 chr16 57333921 57333921 1 + G A rs577579670 57333935 + 57333915 57333955 41 GGAGGCGTGGGTTCGAATCCCACTTCTGACAAGCGCTCTTT GGAGGCATGGGTTCGAATCCCACTTCTGACAAGCGCTCTTT < 41bp 1 0.359804419690033 1 0.0333499908447266 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333935 chr16:57333921 . . 0 7 hm5C_associated_SNPs_11730 0 0 1 0 0 unknown 1 0.500231643923853 1 0.999536712152294 hm5C_site_13827 DeepMRMD:1;iRNA_m5C:0.999536712152294 13828 chr16 57333921 57333921 1 + G A rs577579670 57333937 + 57333917 57333957 41 AGGCGTGGGTTCGAATCCCACTTCTGACAAGCGCTCTTTTC AGGCATGGGTTCGAATCCCACTTCTGACAAGCGCTCTTTTC < 41bp 1 0.192359676823095 1 0.0961734056472778 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333937 chr16:57333921 . . 0 5 hm5C_associated_SNPs_11731 0 0 1 0 0 unknown 1 0.500231644321321 1 0.999536711357358 hm5C_site_13828 DeepMRMD:1;iRNA_m5C:0.999536711357358 13829 chr16 57333936 57333936 1 + A C rs142778319 57333928 + 57333908 57333948 41 CTCCCCTGGAGGCGTGGGTTCGAATCCCACTTCTGACAAGC CTCCCCTGGAGGCGTGGGTTCGAATCCCCCTTCTGACAAGC < 41bp 1 0.259737733944342 1 0.255398392677307 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333928 chr16:57333936 . . 0 29 hm5C_associated_SNPs_11732 0 0 1 0 0 unknown 1 0.500231643842801 1 0.999536712314399 hm5C_site_13829 DeepMRMD:1;iRNA_m5C:0.999536712314399 13830 chr16 57333936 57333936 1 + A C rs142778319 57333934 + 57333914 57333954 41 TGGAGGCGTGGGTTCGAATCCCACTTCTGACAAGCGCTCTT TGGAGGCGTGGGTTCGAATCCCCCTTCTGACAAGCGCTCTT < 41bp 1 0.24236218575227 1 0.13949516415596 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333934 chr16:57333936 . . 0 23 hm5C_associated_SNPs_11733 0 0 1 0 0 unknown 1 0.500231643920953 1 0.999536712158095 hm5C_site_13830 DeepMRMD:1;iRNA_m5C:0.999536712158095 13831 chr16 57333936 57333936 1 + A C rs142778319 57333935 + 57333915 57333955 41 GGAGGCGTGGGTTCGAATCCCACTTCTGACAAGCGCTCTTT GGAGGCGTGGGTTCGAATCCCCCTTCTGACAAGCGCTCTTT < 41bp 1 0.138301941840272 1 0.0178512334823608 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333935 chr16:57333936 . . 0 22 hm5C_associated_SNPs_11734 0 0 1 0 0 unknown 1 0.500231643921099 1 0.999536712157802 hm5C_site_13831 DeepMRMD:1;iRNA_m5C:0.999536712157802 13832 chr16 57333936 57333936 1 + A C rs142778319 57333937 + 57333917 57333957 41 AGGCGTGGGTTCGAATCCCACTTCTGACAAGCGCTCTTTTC AGGCGTGGGTTCGAATCCCCCTTCTGACAAGCGCTCTTTTC < 41bp 1 0.203209248193275 1 0.12704473733902 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLLP;CCL22 ENSG00000102934;ENSG00000260965 intergenic Human other chr16:57333937 chr16:57333936 . . 0 20 hm5C_associated_SNPs_11735 0 0 1 0 0 unknown 1 0.500231643921008 1 0.999536712157983 hm5C_site_13832 DeepMRMD:1;iRNA_m5C:0.999536712157983 13833 chr16 57486788 57486788 1 + A C rs567112416 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCCGCCCTT < 41bp 1 0.672641238658694 1 0.881620585918427 experiment 0.654717522682613 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486788 synonymous SNV . 0 35 hm5C_associated_SNPs_11736 0 0 1 0 2 Ribosome 1 0.500231643930169 0.236758828163146 0.999536712139663 hm5C_site_13833 DeepMRMD:0.236758828163146;iRNA_m5C:0.999536712139663 13834 chr16 57494635 57494635 1 + A G rs111229926 57494618 + 57494598 57494638 41 GAAAAGTATAAGGTGCCATCCACATAACCTGGTGTTCACGA GAAAAGTATAAGGTGCCATCCACATAACCTGGTGTTCGCGA < 41bp 1 0.177832188884018 1 0.397031456232071 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COQ9 ENSG00000088682 UTR3 Human protein_coding chr16:57494618 chr16:57494635 . . 0 38 hm5C_associated_SNPs_11737 0 0 1 0 0 Ribosome 1 0.500231644138399 1 0.999536711723203 hm5C_site_13834 DeepMRMD:1;iRNA_m5C:0.999536711723203 13835 chr16 57494636 57494636 1 + C T rs373048666 57494618 + 57494598 57494638 41 GAAAAGTATAAGGTGCCATCCACATAACCTGGTGTTCACGA GAAAAGTATAAGGTGCCATCCACATAACCTGGTGTTCATGA < 41bp 1 0.160338179036455 1 0.204910606145859 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COQ9 ENSG00000088682 UTR3 Human protein_coding chr16:57494618 chr16:57494636 . . 0 39 hm5C_associated_SNPs_11738 1 0 1 0 0 Ribosome 1 0.500231650850962 1 0.999536698298076 hm5C_site_13835 DeepMRMD:1;iRNA_m5C:0.999536698298076 Coenzyme Q10 deficiency, primary Coenzyme Q10 deficiency, primary 13836 chr16 57496564 57496564 1 + G A rs530319749 57496562 + 57496542 57496582 41 AGCCGCGGAGGCCTCGCTGACTGACTTCCGGTGTTGGCGGT AGCCGCGGAGGCCTCGCTGACTAACTTCCGGTGTTGGCGGT < 41bp 1 0.495720650433516 1 0.201522380113602 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLR2C ENSG00000260345 ncRNA_exonic Human processed_transcript chr16:57496562 chr16:57496564 . . 0 23 hm5C_associated_SNPs_11739 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13836 DeepMRMD:1;iRNA_m5C:0.999536712157815 13837 chr16 57685221 57685221 1 + C G rs140963173 57685240 + 57685220 57685260 41 TCGAGAACTCCGAAGAGGCCCTCACAGTCCATGCCCCTTTC TGGAGAACTCCGAAGAGGCCCTCACAGTCCATGCCCCTTTC < 41bp 1 0.304641530155635 1 0.0617262125015259 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57685240 chr16:57685221 nonsynonymous SNV 0.002 3 2 hm5C_associated_SNPs_11740 0 0 1 0 1 Nucleus 1 0.500231643920614 1 0.999536712158773 hm5C_site_13837 DeepMRMD:1;iRNA_m5C:0.999536712158773 13838 chr16 57786711 57786711 1 + C T rs2965798 57786697 + 57786677 57786717 41 TCGCCTGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGC TCGCCTGGCCCAGGAGCGTCCTCTTCAACCCAGATGGCTGC < 41bp 1 0.176661822376974 1 0.109075009822845 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786697 chr16:57786711 synonymous SNV . 0 35 hm5C_associated_SNPs_11741 0 0 1 0 1 Cytosol 1 0.500231643920607 1 0.999536712158786 hm5C_site_13838 DeepMRMD:1;iRNA_m5C:0.999536712158786 13839 chr16 57786711 57786711 1 + C T rs2965798 57786702 + 57786682 57786722 41 TGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGCTGCCT TGGCCCAGGAGCGTCCTCTTCAACCCAGATGGCTGCTGCCT < 41bp 1 0.363713873922449 1 0.131605178117752 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786702 chr16:57786711 synonymous SNV . 0 30 hm5C_associated_SNPs_11742 0 0 1 0 1 Cytosol 1 0.500231644008079 1 0.999536711983842 hm5C_site_13839 DeepMRMD:1;iRNA_m5C:0.999536711983842 13840 chr16 58079268 58079268 1 + C T rs141377329 58079249 + 58079229 58079269 41 TGGTGCCACTGCTGCTGCTGCTCTGCGTCCTGGGCCTCACC TGGTGCCACTGCTGCTGCTGCTCTGCGTCCTGGGCCTCATC < 41bp 1 0.18224769209396 1 0.102005928754807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP15 ENSG00000102996 CDS Human protein_coding chr16:58079249 chr16:58079268 nonsynonymous SNV 0.007 0 40 hm5C_associated_SNPs_11746 0 0 1 0 0 Ribosome 1 0.500231536403371 1 0.999536927193259 hm5C_site_13840 DeepMRMD:1;iRNA_m5C:0.999536927193259 13841 chr16 58079642 58079642 1 + G T rs553292764 58079636 + 58079616 58079656 41 ATCCTCTGGCTTGGCCACAGCCAGGGGAGCAGAGGGGCAGA ATCCTCTGGCTTGGCCACAGCCAGGGTAGCAGAGGGGCAGA < 41bp 1 0.535140234519853 1 0.749111294746399 experiment 0.929719530960294 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MMP15 ENSG00000102996 UTR3 Human protein_coding chr16:58079636 chr16:58079642 . . 0 27 hm5C_associated_SNPs_11747 0 0 1 0 0 Ribosome 1 0.500231643921063 0.501777410507202 0.999536712157873 hm5C_site_13841 DeepMRMD:0.501777410507202;iRNA_m5C:0.999536712157873 13842 chr16 58079642 58079642 1 + G T rs553292764 58079661 + 58079641 58079681 41 GGAGCAGAGGGGCAGAGGCCCACATTGGAAGAGCAGCACCT GTAGCAGAGGGGCAGAGGCCCACATTGGAAGAGCAGCACCT < 41bp 1 0.33336560300808 1 0.506043672561646 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MMP15 ENSG00000102996 UTR3 Human protein_coding chr16:58079661 chr16:58079642 . . 0 2 hm5C_associated_SNPs_11749 0 0 1 0 0 Ribosome 1 0.500231643921073 0.987912654876708 0.999536712157854 hm5C_site_13842 DeepMRMD:0.987912654876708;iRNA_m5C:0.999536712157854 13843 chr16 58080525 58080525 1 + C G rs557928662 58080519 + 58080499 58080539 41 TTCCCAAAGCAAGCAAGAGGCCGTGGCTGCTGTGGGAAATG TTCCCAAAGCAAGCAAGAGGCCGTGGGTGCTGTGGGAAATG < 41bp 1 0.14523648256226 1 0.206867188215256 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MMP15 ENSG00000102996 UTR3 Human protein_coding chr16:58080519 chr16:58080525 . . 0 27 hm5C_associated_SNPs_11750 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13843 DeepMRMD:1;iRNA_m5C:0.999536712157815 13844 chr16 66515363 66515363 1 + C T rs570636108 66515379 + 66515359 66515399 41 TGTGCGCTGTGCCTATCTCTCGATTCCAGGGCAGATGAGCC TGTGTGCTGTGCCTATCTCTCGATTCCAGGGCAGATGAGCC < 41bp 1 0.168064799630778 1 0.793425321578979 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BEAN1 ENSG00000166546 UTR3 Human protein_coding chr16:66515379 chr16:66515363 . . 0 5 hm5C_associated_SNPs_11751 0 0 0 0 1 nucleus 1 0.500231643897999 0.413149356842042 0.999536712204001 hm5C_site_13844 DeepMRMD:0.413149356842042;iRNA_m5C:0.999536712204001 13845 chr16 66921728 66921728 1 + G A rs560712708 66921738 + 66921718 66921758 41 GGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAG GGTGGTGCATACCTGTAATCCCAGCTACTCGGGAGGCTGAG < 41bp 1 0.353116085137116 1 0.426420152187347 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PDP2 ENSG00000172840 UTR3 Human protein_coding chr16:66921738 chr16:66921728 . . 0 11 hm5C_associated_SNPs_11753 0 0 0 0 0 nucleolus 1 0.500231338117943 1 0.999537323764114 hm5C_site_13845 DeepMRMD:1;iRNA_m5C:0.999537323764114 13846 chr16 66921728 66921728 1 + G A rs560712708 66921739 + 66921719 66921759 41 GTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGG GTGGTGCATACCTGTAATCCCAGCTACTCGGGAGGCTGAGG < 41bp 1 0.565840507198763 1 0.776157259941101 experiment 0.868318985602474 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PDP2 ENSG00000172840 UTR3 Human protein_coding chr16:66921739 chr16:66921728 . . 0 10 hm5C_associated_SNPs_11754 0 0 0 0 0 nucleolus 1 0.500231643920958 0.447685480117798 0.999536712158084 hm5C_site_13846 DeepMRMD:0.447685480117798;iRNA_m5C:0.999536712158084 13847 chr16 66921728 66921728 1 + G A rs560712708 66921742 + 66921722 66921762 41 GTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAG GTGCATACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAG < 41bp 1 0.319514941753253 1 0.115913569927216 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PDP2 ENSG00000172840 UTR3 Human protein_coding chr16:66921742 chr16:66921728 . . 0 7 hm5C_associated_SNPs_11755 0 0 0 0 0 nucleolus 1 0.500231643919744 1 0.999536712160513 hm5C_site_13847 DeepMRMD:1;iRNA_m5C:0.999536712160513 13848 chr16 66968700 66968700 1 + G A rs563621668 66968706 + 66968686 66968726 41 CCGGTGACGCGCCTGCCTCCCCTGCTGCACCATAGGCCCGG CCGGTGACGCGCCTACCTCCCCTGCTGCACCATAGGCCCGG < 41bp 1 0.103917411690421 1 0.147266626358032 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CES2 ENSG00000172831 UTR5 Human protein_coding chr16:66968706 chr16:66968700 . . 0 15 hm5C_associated_SNPs_11756 0 0 1 0 0 Cytosol 1 0.500231590739591 1 0.999536818520818 hm5C_site_13848 DeepMRMD:1;iRNA_m5C:0.999536818520818 13849 chr16 66998552 66998552 1 + G A rs147731637 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGGCTATTCCACAGAGCCATCACACAGAGTGGGGTCAT < 41bp 1 0.3761578287227 1 0.0966837406158447 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998552 synonymous SNV . 0 9 hm5C_associated_SNPs_11757 0 0 1 0 2 nucleolus 1 0.500231649362214 1 0.999536701275572 hm5C_site_13849 DeepMRMD:1;iRNA_m5C:0.999536701275572 13850 chr16 67006793 67006793 1 + A G rs71649614 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAGTTCAACCAGGCGGAACAATATCTGGAGATCAACCCA < 41bp 1 0.285833356834577 1 0.285962343215942 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006793 synonymous SNV . 0 5 hm5C_associated_SNPs_11758 0 0 1 0 1 nucleolus 1 0.500231643938414 1 0.999536712123173 hm5C_site_13850 DeepMRMD:1;iRNA_m5C:0.999536712123173 13851 chr16 67572606 67572606 1 + C T rs140402307 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCCGCCGGGGCCCTCACGGAAGCCCCCCGCG < 41bp 1 0.0339637811104746 1 0.0698403418064117 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572606 nonsynonymous SNV 0.976 0 24 hm5C_associated_SNPs_11763 0 0 0 0 2 unknown 1 0.500231643921791 1 0.999536712156418 hm5C_site_13851 DeepMRMD:1;iRNA_m5C:0.999536712156418 13852 chr16 67572606 67572606 1 + C T rs140402307 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCCGCCGGGGCCCTCACGGAAGCCCCCCGCGC < 41bp 1 0.27775722633595 1 0.149694174528122 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572606 nonsynonymous SNV 0.976 0 23 hm5C_associated_SNPs_11764 0 0 0 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13852 DeepMRMD:1;iRNA_m5C:0.999536712157815 13853 chr16 67572606 67572606 1 + C T rs140402307 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCCGCCGGGGCCCTCACGGAAGCCCCCCGCGCT < 41bp 1 0.331725267310714 1 0.264867007732391 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572606 nonsynonymous SNV 0.976 0 22 hm5C_associated_SNPs_11765 0 0 0 0 2 unknown 1 0.500231643920984 1 0.999536712158032 hm5C_site_13853 DeepMRMD:1;iRNA_m5C:0.999536712158032 13854 chr16 67578982 67578982 1 + C T rs150695752 67578992 + 67578972 67579012 41 CAGTATGGTGCCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC CAGTATGGTGTCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC < 41bp 1 0.106208904221762 1 0.174777865409851 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578992 chr16:67578982 nonsynonymous SNV 0.993 1 11 hm5C_associated_SNPs_11766 0 0 1 0 1 unknown 1 0.500231389735247 1 0.999537220529506 hm5C_site_13854 DeepMRMD:1;iRNA_m5C:0.999537220529506 13855 chr16 67694857 67694857 1 + G A rs562063556 67694872 + 67694852 67694892 41 GGCGGGGCGGCGCGGGCGGGCCGGCCGGGCTGTGCACCTGC GGCGGAGCGGCGCGGGCGGGCCGGCCGGGCTGTGCACCTGC < 41bp 1 0.660193217544869 1 0.543508231639862 experiment 0.679613564910261 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PARD6A ENSG00000102981 UTR5 Human protein_coding chr16:67694872 chr16:67694857 . . 0 6 hm5C_associated_SNPs_11767 0 0 0 0 0 Ribosome 1 0.500233969155619 0.912983536720276 0.999532061688762 hm5C_site_13855 DeepMRMD:0.912983536720276;iRNA_m5C:0.999532061688762 13856 chr16 67876466 67876466 1 + C G rs79492531 67876451 + 67876431 67876471 41 GGCCGGGCCGGGCCGCGCGGCGCAGCCATGCCTGGCTTTAC GGCCGGGCCGGGCCGCGCGGCGCAGCCATGCCTGGGTTTAC < 41bp 1 0.628128539496365 1 0.339453458786011 experiment 0.743742921007271 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control THAP11 ENSG00000168286 CDS Human protein_coding chr16:67876451 chr16:67876466 synonymous SNV . 0 36 hm5C_associated_SNPs_11769 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13856 DeepMRMD:1;iRNA_m5C:0.999536712157815 13857 chr16 68105011 68105011 1 + C A rs148423881 68104994 + 68104974 68105014 41 GGCCCCTGGAGGAGGTCATGCAGAAATACATCAGATACGTA GGCCCCTGGAGGAGGTCATGCAGAAATACATCAGATAAGTA < 41bp 1 0.572805738382537 1 0.334082067012787 experiment 0.854388523234927 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104994 chr16:68105011 stopgain 0.666 1 38 hm5C_associated_SNPs_11770 0 0 1 0 1 Ribosome 1 0.500231643921113 1 0.999536712157775 hm5C_site_13857 DeepMRMD:1;iRNA_m5C:0.999536712157775 13858 chr16 68119555 68119555 1 + G A rs3743735 68119538 + 68119518 68119558 41 GCTGCCGCCGCTTGCCGCTGCCGCCGCCGCCGCCTGAGGAG GCTGCCGCCGCTTGCCGCTGCCGCCGCCGCCGCCTGAAGAG < 41bp 1 0.499658791183043 1 0.44038599729538 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFATC3 ENSG00000261864 ncRNA_intronic Human processed_transcript chr16:68119538 chr16:68119555 . . 0 38 hm5C_associated_SNPs_11771 0 0 1 0 0 Cytosol 1 0.500231643920899 1 0.999536712158203 hm5C_site_13858 DeepMRMD:1;iRNA_m5C:0.999536712158203 13859 chr16 68119555 68119555 1 + G A rs3743735 68119541 + 68119521 68119561 41 GCCGCCGCTTGCCGCTGCCGCCGCCGCCGCCTGAGGAGGAG GCCGCCGCTTGCCGCTGCCGCCGCCGCCGCCTGAAGAGGAG < 41bp 1 0.436700681099571 1 0.513695001602173 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFATC3 ENSG00000261864 ncRNA_intronic Human processed_transcript chr16:68119541 chr16:68119555 . . 0 35 hm5C_associated_SNPs_11773 0 0 1 0 0 Cytosol 1 0.500231643921092 0.972609996795654 0.999536712157815 hm5C_site_13859 DeepMRMD:0.972609996795654;iRNA_m5C:0.999536712157815 13860 chr16 68119555 68119555 1 + G A rs3743735 68119542 + 68119522 68119562 41 CCGCCGCTTGCCGCTGCCGCCGCCGCCGCCTGAGGAGGAGC CCGCCGCTTGCCGCTGCCGCCGCCGCCGCCTGAAGAGGAGC < 41bp 1 0.667995015782868 1 0.753646850585938 experiment 0.664009968434264 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFATC3 ENSG00000261864 ncRNA_intronic Human processed_transcript chr16:68119542 chr16:68119555 . . 0 34 hm5C_associated_SNPs_11774 0 0 1 0 0 Cytosol 1 0.500231643921092 0.492706298828124 0.999536712157816 hm5C_site_13860 DeepMRMD:0.492706298828124;iRNA_m5C:0.999536712157816 13861 chr16 68119555 68119555 1 + G A rs3743735 68119544 + 68119524 68119564 41 GCCGCTTGCCGCTGCCGCCGCCGCCGCCTGAGGAGGAGCTG GCCGCTTGCCGCTGCCGCCGCCGCCGCCTGAAGAGGAGCTG < 41bp 1 0.453580766993755 1 0.706261277198792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFATC3 ENSG00000261864 ncRNA_intronic Human processed_transcript chr16:68119544 chr16:68119555 . . 0 32 hm5C_associated_SNPs_11775 0 0 1 0 0 Cytosol 1 0.500231643921052 0.587477445602416 0.999536712157896 hm5C_site_13861 DeepMRMD:0.587477445602416;iRNA_m5C:0.999536712157896 13862 chr16 68331171 68331171 1 + T C rs143248146 68331160 + 68331140 68331180 41 CTATCACCAGAGGCACCCAGCAGCTTTGCTTTTGTGTCCTG CTATCACCAGAGGCACCCAGCAGCTTTGCTTCTGTGTCCTG < 41bp 1 0.412643987869498 1 0.227051466703415 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68331160 chr16:68331171 synonymous SNV . 0 32 hm5C_associated_SNPs_11777 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13862 DeepMRMD:1;iRNA_m5C:0.999536712157815 13863 chr16 68373350 68373350 1 + C T rs201449196 68373342 + 68373322 68373362 41 TGCAGACCAGCCTCGGAGAGCAGGTCATCGTCCCTCCCGTT TGCAGACCAGCCTCGGAGAGCAGGTCATTGTCCCTCCCGTT < 41bp 1 0.5992577571163 1 0.67976450920105 experiment 0.801484485767399 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68373342 chr16:68373350 synonymous SNV . 0 29 hm5C_associated_SNPs_11778 0 0 1 0 0 Nucleus 1 0.500231643921305 0.6404709815979 0.999536712157391 hm5C_site_13863 DeepMRMD:0.6404709815979;iRNA_m5C:0.999536712157391 13864 chr16 68390993 68390993 1 + G A rs143131470 68390977 + 68390957 68390997 41 GGGGGCTGCTGCTGGAACCCCCACTGCAAGCAGGCCGTCTA GGGGGCTGCTGCTGGAACCCCCACTGCAAGCAGGCCATCTA < 41bp 1 0.205427851301894 1 0.290209114551544 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68390977 chr16:68390993 nonsynonymous SNV 0.941 4 37 hm5C_associated_SNPs_11779 0 0 1 0 1 Nucleus 1 0.500231686749736 1 0.999536626500527 hm5C_site_13864 DeepMRMD:1;iRNA_m5C:0.999536626500527 13865 chr16 68390993 68390993 1 + G A rs143131470 68391008 + 68390988 68391028 41 AGGCCGTCTACTTCTTCAGCCCTGCCCCAGATCCCAGAGCA AGGCCATCTACTTCTTCAGCCCTGCCCCAGATCCCAGAGCA < 41bp 1 0.0752364300440326 1 0.116536527872086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68391008 chr16:68390993 nonsynonymous SNV 0.941 4 6 hm5C_associated_SNPs_11780 0 0 1 0 1 Nucleus 1 0.500231645078137 1 0.999536709843727 hm5C_site_13865 DeepMRMD:1;iRNA_m5C:0.999536709843727 13866 chr16 68718560 68718560 1 + G A rs11860187 68718546 + 68718526 68718566 41 TTGAAGTGACCAACGAGGCCCCTTTTGTGCTGAAGCTCCCA TTGAAGTGACCAACGAGGCCCCTTTTGTGCTGAAACTCCCA < 41bp 1 0.00870832045443952 1 0.0677976906299591 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDH3 ENSG00000062038 CDS Human protein_coding chr16:68718546 chr16:68718560 synonymous SNV . 0 35 hm5C_associated_SNPs_11782 1 0 0 0 0 Endoplasmic reticulum 1 0.500231671199437 1 0.999536657601126 hm5C_site_13866 DeepMRMD:1;iRNA_m5C:0.999536657601126 EEM syndrome EEM syndrome 13867 chr16 69340707 69340707 1 + G A rs190059153 69340722 + 69340702 69340742 41 TGGTGGTGCGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGA TGGTGATGCGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGA < 41bp 1 0.383518260116813 1 0.321811586618423 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNTB2 ENSG00000168807 UTR3 Human protein_coding chr16:69340722 chr16:69340707 . . 0 6 hm5C_associated_SNPs_11784 0 0 0 0 0 Ribosome 1 0.500231425136208 1 0.999537149727584 hm5C_site_13867 DeepMRMD:1;iRNA_m5C:0.999537149727584 13868 chr16 69340707 69340707 1 + G A rs190059153 69340723 + 69340703 69340743 41 GGTGGTGCGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAG GGTGATGCGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAG < 41bp 1 0.272833124087107 1 0.53186708688736 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNTB2 ENSG00000168807 UTR3 Human protein_coding chr16:69340723 chr16:69340707 . . 0 5 hm5C_associated_SNPs_11785 0 0 0 0 0 Ribosome 1 0.500231643921032 0.93626582622528 0.999536712157935 hm5C_site_13868 DeepMRMD:0.93626582622528;iRNA_m5C:0.999536712157935 13869 chr16 69340707 69340707 1 + G A rs190059153 69340724 + 69340704 69340744 41 GTGGTGCGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGG GTGATGCGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGG < 41bp 1 0.581504693590274 1 0.809249222278595 experiment 0.836990612819452 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SNTB2 ENSG00000168807 UTR3 Human protein_coding chr16:69340724 chr16:69340707 . . 0 4 hm5C_associated_SNPs_11786 0 0 0 0 0 Ribosome 1 0.500231643901385 0.38150155544281 0.99953671219723 hm5C_site_13869 DeepMRMD:0.38150155544281;iRNA_m5C:0.99953671219723 13870 chr16 69340707 69340707 1 + G A rs190059153 69340727 + 69340707 69340747 41 GTGCGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGTGG ATGCGCGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGTGG < 41bp 1 0.377370867000032 1 0.231713443994522 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNTB2 ENSG00000168807 UTR3 Human protein_coding chr16:69340727 chr16:69340707 . . 0 1 hm5C_associated_SNPs_11787 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13870 DeepMRMD:1;iRNA_m5C:0.999536712157815 13871 chr16 69358684 69358684 1 + T C rs140117270 69358694 + 69358674 69358714 41 TGAGAGCAGATTGGCTGATGCCCCTGCAACCCCAGCCCAAG TGAGAGCAGACTGGCTGATGCCCCTGCAACCCCAGCCCAAG < 41bp 1 0.467059131380934 1 0.0681805014610291 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS4A ENSG00000132612 UTR3 Human protein_coding chr16:69358694 chr16:69358684 . . 0 11 hm5C_associated_SNPs_11788 0 0 1 0 0 Cytosol 1 0.500231627002658 1 0.999536745994684 hm5C_site_13871 DeepMRMD:1;iRNA_m5C:0.999536745994684 13872 chr16 69496677 69496677 1 + T G rs546818684 69496665 + 69496645 69496685 41 TTGCCGGTGTTTCCTCTCTTCACTGGTTTCCATGAGTACCC TTGCCGGTGTTTCCTCTCTTCACTGGTTTCCAGGAGTACCC < 41bp 1 0.594251222952161 1 0.293391048908234 experiment 0.811497554095678 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYB5B ENSG00000103018 UTR3 Human protein_coding chr16:69496665 chr16:69496677 . . 0 33 hm5C_associated_SNPs_11789 0 0 1 0 0 Ribosome 1 0.500231643921066 1 0.999536712157868 hm5C_site_13872 DeepMRMD:1;iRNA_m5C:0.999536712157868 13873 chr16 69496967 69496967 1 + C G rs377150053 69496973 + 69496953 69496993 41 CCTGGGCAACATAGCGAGACCCCTATCTGTATTAAAAAAAA CCTGGGCAACATAGGGAGACCCCTATCTGTATTAAAAAAAA < 41bp 1 0.249195689056386 1 0.175141125917435 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYB5B ENSG00000103018 UTR3 Human protein_coding chr16:69496973 chr16:69496967 . . 0 15 hm5C_associated_SNPs_11791 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13873 DeepMRMD:1;iRNA_m5C:0.999536712157815 13874 chr16 69497203 69497203 1 + G A rs12149862 69497187 + 69497167 69497207 41 CCAGCCCCTGAGCCCAGCCCCTTCCCAAGTGGTGCCGGACA CCAGCCCCTGAGCCCAGCCCCTTCCCAAGTGGTGCCAGACA < 41bp 1 0.188846950276963 1 0.136798053979874 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYB5B ENSG00000103018 UTR3 Human protein_coding chr16:69497187 chr16:69497203 . . 0 37 hm5C_associated_SNPs_11792 0 1 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13874 DeepMRMD:1;iRNA_m5C:0.999536712157815 13875 chr16 69943390 69943390 1 + G A rs77414179 69943400 + 69943380 69943420 41 GCTGTCAGGCGTGTGCCACACACATCCCACCTCATCTTCTG GCTGTCAGGCATGTGCCACACACATCCCACCTCATCTTCTG < 41bp 1 0.205674485608268 1 0.153725922107697 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WWP2 ENSG00000198373 UTR3 Human protein_coding chr16:69943400 chr16:69943390 . . 0 11 hm5C_associated_SNPs_11793 0 0 1 0 0 Ribosome 1 0.500231651847809 1 0.999536696304382 hm5C_site_13875 DeepMRMD:1;iRNA_m5C:0.999536696304382 13876 chr16 69975126 69975126 1 + T A rs572037081 69975139 + 69975119 69975159 41 ATTGAAATCTTCAAGGTGACCATGCCCCACCGGGGTGCTGG ATTGAAAACTTCAAGGTGACCATGCCCCACCGGGGTGCTGG < 41bp 1 0.378027573374292 1 0.0482383370399475 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WWP2 ENSG00000198373 UTR3 Human protein_coding chr16:69975139 chr16:69975126 . . 0 8 hm5C_associated_SNPs_11794 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_13876 DeepMRMD:1;iRNA_m5C:0.999536712157815 13877 chr16 69975127 69975127 1 + C T rs58227376 69975139 + 69975119 69975159 41 ATTGAAATCTTCAAGGTGACCATGCCCCACCGGGGTGCTGG ATTGAAATTTTCAAGGTGACCATGCCCCACCGGGGTGCTGG < 41bp 1 0.357048187660368 1 0.0680478513240814 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WWP2 ENSG00000198373 UTR3 Human protein_coding chr16:69975139 chr16:69975127 . . 0 9 hm5C_associated_SNPs_11795 0 0 0 0 0 Ribosome 1 0.500231643921055 1 0.999536712157889 hm5C_site_13877 DeepMRMD:1;iRNA_m5C:0.999536712157889 13878 chr16 70148798 70148798 1 + A G rs552342289 70148795 + 70148775 70148815 41 CTAAAGACTGCTGCAGAGTCCGGAGGAAGAAGTCACCTAGA CTAAAGACTGCTGCAGAGTCCGGGGGAAGAAGTCACCTAGA < 41bp 1 0.688933811289013 1 0.933434844017029 experiment 0.622132377421975 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDPR ENSG00000090857 UTR5 Human protein_coding chr16:70148795 chr16:70148798 . . 0 24 hm5C_associated_SNPs_11796 0 0 1 0 2 Nucleus 1 0.500231643921024 0.133130311965942 0.999536712157953 hm5C_site_13878 DeepMRMD:0.133130311965942;iRNA_m5C:0.999536712157953 13879 chr16 70164333 70164333 1 + G A rs142301135 70164350 + 70164330 70164370 41 TCAGATCTATGACCGGACATCTGTTCTTCATGTAATGGTCA TCAAATCTATGACCGGACATCTGTTCTTCATGTAATGGTCA < 41bp 1 0.0655474027847279 1 0.0723890960216522 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70164350 chr16:70164333 synonymous SNV . 0 4 hm5C_associated_SNPs_11797 0 0 0 0 1 Nucleus 1 0.500231605082736 1 0.999536789834528 hm5C_site_13879 DeepMRMD:1;iRNA_m5C:0.999536789834528 13880 chr16 70194013 70194013 1 + C T rs142098932 70193993 + 70193973 70194013 41 GCCATCTGAACCTAGGAACACAAAGTATATTGGCCTCAAAC GCCATCTGAACCTAGGAACACAAAGTATATTGGCCTCAAAT < 41bp 1 0.55323528523404 1 0.267231523990631 experiment 0.893529429531919 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC400541 ENSG00000247228 ncRNA_intronic Human antisense chr16:70193993 chr16:70194013 . . 0 41 hm5C_associated_SNPs_11798 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13880 DeepMRMD:1;iRNA_m5C:0.999536712157815 13881 chr16 70194013 70194013 1 + C T rs142098932 70194006 + 70193986 70194026 41 AGGAACACAAAGTATATTGGCCTCAAACGGAGACCCAGGGT AGGAACACAAAGTATATTGGCCTCAAATGGAGACCCAGGGT < 41bp 1 0.304701263006293 1 0.0549759268760681 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC400541 ENSG00000247228 ncRNA_intronic Human antisense chr16:70194006 chr16:70194013 . . 0 28 hm5C_associated_SNPs_11799 0 0 1 0 0 unknown 1 0.500231643948211 1 0.999536712103579 hm5C_site_13881 DeepMRMD:1;iRNA_m5C:0.999536712103579 13882 chr16 70194013 70194013 1 + C T rs142098932 70194007 + 70193987 70194027 41 GGAACACAAAGTATATTGGCCTCAAACGGAGACCCAGGGTT GGAACACAAAGTATATTGGCCTCAAATGGAGACCCAGGGTT < 41bp 1 0.519359086804559 1 0.370942175388336 experiment 0.961281826390882 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC400541 ENSG00000247228 ncRNA_intronic Human antisense chr16:70194007 chr16:70194013 . . 0 27 hm5C_associated_SNPs_11800 0 0 1 0 0 unknown 1 0.500231643892959 1 0.999536712214083 hm5C_site_13882 DeepMRMD:1;iRNA_m5C:0.999536712214083 13883 chr16 70194013 70194013 1 + C T rs142098932 70194009 + 70193989 70194029 41 AACACAAAGTATATTGGCCTCAAACGGAGACCCAGGGTTGC AACACAAAGTATATTGGCCTCAAATGGAGACCCAGGGTTGC < 41bp 1 0.375956139180786 1 0.496080696582794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC400541 ENSG00000247228 ncRNA_intronic Human antisense chr16:70194009 chr16:70194013 . . 0 25 hm5C_associated_SNPs_11801 0 0 1 0 0 unknown 1 0.500231645618143 1 0.999536708763715 hm5C_site_13883 DeepMRMD:1;iRNA_m5C:0.999536708763715 13884 chr16 70194013 70194013 1 + C T rs142098932 70194019 + 70193999 70194039 41 ATATTGGCCTCAAACGGAGACCCAGGGTTGCCAGTTTTCCG ATATTGGCCTCAAATGGAGACCCAGGGTTGCCAGTTTTCCG < 41bp 1 0.222079963564225 1 0.0511307418346405 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC400541 ENSG00000247228 ncRNA_intronic Human antisense chr16:70194019 chr16:70194013 . . 0 15 hm5C_associated_SNPs_11802 0 0 1 0 0 unknown 1 0.500231642015706 1 0.999536715968588 hm5C_site_13884 DeepMRMD:1;iRNA_m5C:0.999536715968588 13885 chr16 70194013 70194013 1 + C T rs142098932 70194020 + 70194000 70194040 41 TATTGGCCTCAAACGGAGACCCAGGGTTGCCAGTTTTCCGT TATTGGCCTCAAATGGAGACCCAGGGTTGCCAGTTTTCCGT < 41bp 1 0.469194925759515 1 0.180197536945343 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LOC400541 ENSG00000247228 ncRNA_intronic Human antisense chr16:70194020 chr16:70194013 . . 0 14 hm5C_associated_SNPs_11803 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13885 DeepMRMD:1;iRNA_m5C:0.999536712157815 13886 chr16 70194885 70194885 1 + A G rs544809642 70194879 + 70194859 70194899 41 AATCTTCTGTGGCCCACAGTCTCCATATTGGCACTAGAAGA AATCTTCTGTGGCCCACAGTCTCCATGTTGGCACTAGAAGA < 41bp 1 0.646439948897653 1 0.91494357585907 experiment 0.707120102204695 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LOC400541 ENSG00000247228 ncRNA_intronic Human antisense chr16:70194879 chr16:70194885 . . 0 27 hm5C_associated_SNPs_11804 0 0 1 0 0 unknown 1 0.500231643887488 0.17011284828186 0.999536712225024 hm5C_site_13886 DeepMRMD:0.17011284828186;iRNA_m5C:0.999536712225024 13887 chr16 70367545 70367545 1 + G A rs397821730 70367559 + 70367539 70367579 41 AAGTGCGTTCAGGGCACAGGCCCCGACATCACCCCAAGGAC AAGTGCATTCAGGGCACAGGCCCCGACATCACCCCAAGGAC < 41bp 1 0.619167661772314 1 0.38948455452919 experiment 0.761664676455373 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LOC100506083 ENSG00000261777 ncRNA_intronic Human processed_transcript chr16:70367559 chr16:70367545 . . 0 7 hm5C_associated_SNPs_11805 0 0 1 1 0 unknown 1 0.500231643921026 1 0.999536712157947 hm5C_site_13887 DeepMRMD:1;iRNA_m5C:0.999536712157947 13888 chr16 70367548 70367548 1 + C G rs148606610 70367559 + 70367539 70367579 41 AAGTGCGTTCAGGGCACAGGCCCCGACATCACCCCAAGGAC AAGTGCGTTGAGGGCACAGGCCCCGACATCACCCCAAGGAC < 41bp 1 0.619747478065386 1 0.271716922521591 experiment 0.760505043869227 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LOC100506083 ENSG00000261777 ncRNA_intronic Human processed_transcript chr16:70367559 chr16:70367548 . . 0 10 hm5C_associated_SNPs_11806 0 0 1 1 0 unknown 1 0.500231643688688 1 0.999536712622623 hm5C_site_13888 DeepMRMD:1;iRNA_m5C:0.999536712622623 13889 chr16 70380871 70380871 1 + A C rs536295255 70380882 + 70380862 70380902 41 ATTTTCACAAGTGGGTCTCCCTTGTCCGGGACTATGGCCAC ATTTTCACACGTGGGTCTCCCTTGTCCGGGACTATGGCCAC < 41bp 1 0.42421993932441 1 0.0183603167533875 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DDX19A ENSG00000168872 UTR5 Human protein_coding chr16:70380882 chr16:70380871 . . 0 10 hm5C_associated_SNPs_11807 0 0 1 0 1 Ribosome 1 0.500231643943935 1 0.99953671211213 hm5C_site_13889 DeepMRMD:1;iRNA_m5C:0.99953671211213 13890 chr16 70407019 70407019 1 + G A rs569219677 70407000 + 70406980 70407020 41 AGAAAAAAATATAGCCGGGCCTGGTGGCGCACGCCTGTAGT AGAAAAAAATATAGCCGGGCCTGGTGGCGCACGCCTGTAAT < 41bp 1 0.659682421098618 1 0.336902737617493 experiment 0.680635157802763 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX19A ENSG00000168872 UTR3 Human protein_coding chr16:70407000 chr16:70407019 . . 0 40 hm5C_associated_SNPs_11808 0 0 0 0 0 Ribosome 1 0.500231643920999 1 0.999536712158002 hm5C_site_13890 DeepMRMD:1;iRNA_m5C:0.999536712158002 13891 chr16 70407100 70407100 1 + C T rs80176395 70407108 + 70407088 70407128 41 ATGGCGCCACTGCACTCCAGCCTGGGTAACAGAGCGAGACC ATGGCGCCACTGTACTCCAGCCTGGGTAACAGAGCGAGACC < 41bp 1 0.417323797403481 1 0.143369078636169 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX19A ENSG00000168872 UTR3 Human protein_coding chr16:70407108 chr16:70407100 . . 0 13 hm5C_associated_SNPs_11809 0 0 1 0 0 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_13891 DeepMRMD:1;iRNA_m5C:0.99953671215782 13892 chr16 70822624 70822624 1 + C T rs115714969 70822622 + 70822602 70822642 41 GGTGGTTCAGTGGTAGAATTCTCGCCTGCCATGCGGGCGGC GGTGGTTCAGTGGTAGAATTCTTGCCTGCCATGCGGGCGGC < 41bp 1 0.475849162854011 1 0.325884282588959 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VAC14 ENSG00000103043 intronic Human protein_coding chr16:70822622 chr16:70822624 . . 0 23 hm5C_associated_SNPs_11811 0 0 1 0 0 Ribosome 1 0.500231643928841 1 0.999536712142318 hm5C_site_13892 DeepMRMD:1;iRNA_m5C:0.999536712142318 13893 chr16 70822624 70822624 1 + C T rs115714969 70822626 + 70822606 70822646 41 GTTCAGTGGTAGAATTCTCGCCTGCCATGCGGGCGGCCGGG GTTCAGTGGTAGAATTCTTGCCTGCCATGCGGGCGGCCGGG < 41bp 1 0.137329529098518 1 0.0979118645191193 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VAC14 ENSG00000103043 intronic Human protein_coding chr16:70822626 chr16:70822624 . . 0 19 hm5C_associated_SNPs_11812 0 0 1 0 0 Ribosome 1 0.500231643922103 1 0.999536712155794 hm5C_site_13893 DeepMRMD:1;iRNA_m5C:0.999536712155794 13894 chr16 70822624 70822624 1 + C T rs115714969 70822627 + 70822607 70822647 41 TTCAGTGGTAGAATTCTCGCCTGCCATGCGGGCGGCCGGGC TTCAGTGGTAGAATTCTTGCCTGCCATGCGGGCGGCCGGGC < 41bp 1 0.359273059861173 1 0.152436792850494 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout VAC14 ENSG00000103043 intronic Human protein_coding chr16:70822627 chr16:70822624 . . 0 18 hm5C_associated_SNPs_11813 0 0 1 0 0 Ribosome 1 0.500231639101017 1 0.999536721797966 hm5C_site_13894 DeepMRMD:1;iRNA_m5C:0.999536721797966 13895 chr16 70822624 70822624 1 + C T rs115714969 70822630 + 70822610 70822650 41 AGTGGTAGAATTCTCGCCTGCCATGCGGGCGGCCGGGCTTC AGTGGTAGAATTCTTGCCTGCCATGCGGGCGGCCGGGCTTC < 41bp 1 0.192544729181551 1 0.0756628513336182 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target VAC14 ENSG00000103043 intronic Human protein_coding chr16:70822630 chr16:70822624 . . 0 15 hm5C_associated_SNPs_11814 0 0 1 0 0 Ribosome 1 0.500231643921084 1 0.999536712157831 hm5C_site_13895 DeepMRMD:1;iRNA_m5C:0.999536712157831 13896 chr16 70822624 70822624 1 + C T rs115714969 70822631 + 70822611 70822651 41 GTGGTAGAATTCTCGCCTGCCATGCGGGCGGCCGGGCTTCG GTGGTAGAATTCTTGCCTGCCATGCGGGCGGCCGGGCTTCG < 41bp 1 0.236763416671575 1 0.389368146657944 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target VAC14 ENSG00000103043 intronic Human protein_coding chr16:70822631 chr16:70822624 . . 0 14 hm5C_associated_SNPs_11815 0 0 1 0 0 Ribosome 1 0.500231643917396 1 0.999536712165207 hm5C_site_13896 DeepMRMD:1;iRNA_m5C:0.999536712165207 13897 chr16 70822624 70822624 1 + C T rs115714969 70822639 + 70822619 70822659 41 ATTCTCGCCTGCCATGCGGGCGGCCGGGCTTCGATTCCTGG ATTCTTGCCTGCCATGCGGGCGGCCGGGCTTCGATTCCTGG < 41bp 1 0.343130046291183 1 0.356131374835968 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control VAC14 ENSG00000103043 intronic Human protein_coding chr16:70822639 chr16:70822624 . . 0 6 hm5C_associated_SNPs_11816 0 0 1 0 0 Ribosome 1 0.500210214593189 1 0.999579570813621 hm5C_site_13897 DeepMRMD:1;iRNA_m5C:0.999579570813621 13898 chr16 70822624 70822624 1 + C T rs115714969 70822643 + 70822623 70822663 41 TCGCCTGCCATGCGGGCGGCCGGGCTTCGATTCCTGGCCAA TTGCCTGCCATGCGGGCGGCCGGGCTTCGATTCCTGGCCAA < 41bp 1 0.68714250754052 1 0.832383632659912 experiment 0.62571498491896 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target VAC14 ENSG00000103043 intronic Human protein_coding chr16:70822643 chr16:70822624 . . 0 2 hm5C_associated_SNPs_11817 0 0 1 0 0 Ribosome 1 0.500231643921092 0.335232734680176 0.999536712157815 hm5C_site_13898 DeepMRMD:0.335232734680176;iRNA_m5C:0.999536712157815 13899 chr16 70822647 70822647 1 + C A rs78067362 70822627 + 70822607 70822647 41 TTCAGTGGTAGAATTCTCGCCTGCCATGCGGGCGGCCGGGC TTCAGTGGTAGAATTCTCGCCTGCCATGCGGGCGGCCGGGA < 41bp 1 0.276402677625459 1 0.306303858757019 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout VAC14 ENSG00000103043 intronic Human protein_coding chr16:70822627 chr16:70822647 . . 0 41 hm5C_associated_SNPs_11818 0 0 0 0 0 Ribosome 1 0.500231550863891 1 0.999536898272218 hm5C_site_13899 DeepMRMD:1;iRNA_m5C:0.999536898272218 13900 chr16 70822647 70822647 1 + C A rs78067362 70822630 + 70822610 70822650 41 AGTGGTAGAATTCTCGCCTGCCATGCGGGCGGCCGGGCTTC AGTGGTAGAATTCTCGCCTGCCATGCGGGCGGCCGGGATTC < 41bp 1 0.186177527557912 1 0.0742506682872772 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target VAC14 ENSG00000103043 intronic Human protein_coding chr16:70822630 chr16:70822647 . . 0 38 hm5C_associated_SNPs_11819 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13900 DeepMRMD:1;iRNA_m5C:0.999536712157815 13901 chr16 70822647 70822647 1 + C A rs78067362 70822631 + 70822611 70822651 41 GTGGTAGAATTCTCGCCTGCCATGCGGGCGGCCGGGCTTCG GTGGTAGAATTCTCGCCTGCCATGCGGGCGGCCGGGATTCG < 41bp 1 0.225443238077015 1 0.188712656497955 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target VAC14 ENSG00000103043 intronic Human protein_coding chr16:70822631 chr16:70822647 . . 0 37 hm5C_associated_SNPs_11820 0 0 0 0 0 Ribosome 1 0.500231643905259 1 0.999536712189482 hm5C_site_13901 DeepMRMD:1;iRNA_m5C:0.999536712189482 13902 chr16 70822647 70822647 1 + C A rs78067362 70822639 + 70822619 70822659 41 ATTCTCGCCTGCCATGCGGGCGGCCGGGCTTCGATTCCTGG ATTCTCGCCTGCCATGCGGGCGGCCGGGATTCGATTCCTGG < 41bp 1 0.346094901475948 1 0.383480846881866 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control VAC14 ENSG00000103043 intronic Human protein_coding chr16:70822639 chr16:70822647 . . 0 29 hm5C_associated_SNPs_11821 0 0 0 0 0 Ribosome 1 0.500231643432921 1 0.999536713134158 hm5C_site_13902 DeepMRMD:1;iRNA_m5C:0.999536713134158 13903 chr16 70823471 70823471 1 + G A rs554463128 70823457 + 70823437 70823477 41 CGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAAT CGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCAGCCAAT < 41bp 1 0.647018891496276 1 0.45972204208374 experiment 0.705962217007448 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target VAC14 ENSG00000103043 intronic Human protein_coding chr16:70823457 chr16:70823471 . . 0 35 hm5C_associated_SNPs_11824 0 0 1 0 0 Ribosome 1 0.500231643770009 1 0.999536712459981 hm5C_site_13903 DeepMRMD:1;iRNA_m5C:0.999536712459981 13904 chr16 70823471 70823471 1 + G A rs554463128 70823463 + 70823443 70823483 41 CCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAATGCAGCA CCACGCGGGAGGCCCGGGTTCGATTCCCAGCCAATGCAGCA < 41bp 1 0.282041030456275 1 0.105802357196808 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VAC14 ENSG00000103043 intronic Human protein_coding chr16:70823463 chr16:70823471 . . 0 29 hm5C_associated_SNPs_11825 0 0 1 0 0 Ribosome 1 0.500231643825585 1 0.99953671234883 hm5C_site_13904 DeepMRMD:1;iRNA_m5C:0.99953671234883 13905 chr16 70823476 70823476 1 + A G rs561388669 70823457 + 70823437 70823477 41 CGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAAT CGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAGT < 41bp 1 0.659716217409017 1 0.576538443565369 experiment 0.680567565181965 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target VAC14 ENSG00000103043 intronic Human protein_coding chr16:70823457 chr16:70823476 . . 0 40 hm5C_associated_SNPs_11826 0 0 1 0 0 Ribosome 1 0.500231598208258 0.846923112869262 0.999536803583484 hm5C_site_13905 DeepMRMD:0.846923112869262;iRNA_m5C:0.999536803583484 13906 chr16 70823476 70823476 1 + A G rs561388669 70823463 + 70823443 70823483 41 CCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAATGCAGCA CCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAGTGCAGCA < 41bp 1 0.336552496417841 1 0.102567732334137 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VAC14 ENSG00000103043 intronic Human protein_coding chr16:70823463 chr16:70823476 . . 0 34 hm5C_associated_SNPs_11827 0 0 1 0 0 Ribosome 1 0.500231643928598 1 0.999536712142803 hm5C_site_13906 DeepMRMD:1;iRNA_m5C:0.999536712142803 13907 chr16 71460399 71460399 1 + C T rs576296126 71460415 + 71460395 71460435 41 GGCCCTCTTAGCGCAGTGGGCAGCGCGTCAGTCTCATAATC GGCCTTCTTAGCGCAGTGGGCAGCGCGTCAGTCTCATAATC < 41bp 1 0.483186252071871 1 0.381159871816635 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460415 chr16:71460399 . . 0 5 hm5C_associated_SNPs_11828 0 0 1 0 0 unknown 1 0.500231643921838 1 0.999536712156325 hm5C_site_13907 DeepMRMD:1;iRNA_m5C:0.999536712156325 13908 chr16 71460399 71460399 1 + C T rs576296126 71460418 + 71460398 71460438 41 CCTCTTAGCGCAGTGGGCAGCGCGTCAGTCTCATAATCTGA CTTCTTAGCGCAGTGGGCAGCGCGTCAGTCTCATAATCTGA < 41bp 1 0.521423032088605 1 0.255405455827713 experiment 0.95715393582279 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460418 chr16:71460399 . . 0 2 hm5C_associated_SNPs_11829 0 0 1 0 0 unknown 1 0.500231643875306 1 0.999536712249388 hm5C_site_13908 DeepMRMD:1;iRNA_m5C:0.999536712249388 13909 chr16 71460401 71460401 1 + C G rs148516908 71460415 + 71460395 71460435 41 GGCCCTCTTAGCGCAGTGGGCAGCGCGTCAGTCTCATAATC GGCCCTGTTAGCGCAGTGGGCAGCGCGTCAGTCTCATAATC < 41bp 1 0.535649532422823 1 0.408318072557449 experiment 0.928700935154354 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460415 chr16:71460401 . . 0 7 hm5C_associated_SNPs_11830 0 0 1 0 0 unknown 1 0.500231643922079 1 0.999536712155842 hm5C_site_13909 DeepMRMD:1;iRNA_m5C:0.999536712155842 13910 chr16 71460401 71460401 1 + C G rs148516908 71460418 + 71460398 71460438 41 CCTCTTAGCGCAGTGGGCAGCGCGTCAGTCTCATAATCTGA CCTGTTAGCGCAGTGGGCAGCGCGTCAGTCTCATAATCTGA < 41bp 1 0.528079358321652 1 0.21859946846962 experiment 0.943841283356696 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460418 chr16:71460401 . . 0 4 hm5C_associated_SNPs_11831 0 0 1 0 0 unknown 1 0.500231643904734 1 0.999536712190533 hm5C_site_13910 DeepMRMD:1;iRNA_m5C:0.999536712190533 13911 chr16 71460401 71460401 1 + C G rs148516908 71460420 + 71460400 71460440 41 TCTTAGCGCAGTGGGCAGCGCGTCAGTCTCATAATCTGAAG TGTTAGCGCAGTGGGCAGCGCGTCAGTCTCATAATCTGAAG < 41bp 1 0.695588133864655 1 0.319864213466644 experiment 0.608823732270689 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460420 chr16:71460401 . . 0 2 hm5C_associated_SNPs_11832 0 0 1 0 0 unknown 1 0.500231602546156 1 0.999536794907687 hm5C_site_13911 DeepMRMD:1;iRNA_m5C:0.999536794907687 13912 chr16 71460443 71460443 1 + C A rs552359940 71460429 + 71460409 71460449 41 AGTGGGCAGCGCGTCAGTCTCATAATCTGAAGGTCCTGAGT AGTGGGCAGCGCGTCAGTCTCATAATCTGAAGGTACTGAGT < 41bp 1 0.521096702798635 1 0.568364024162292 experiment 0.957806594402729 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460429 chr16:71460443 . . 0 35 hm5C_associated_SNPs_11833 0 0 1 0 0 unknown 1 0.500231696885298 0.863271951675416 0.999536606229404 hm5C_site_13912 DeepMRMD:0.863271951675416;iRNA_m5C:0.999536606229404 13913 chr16 71460443 71460443 1 + C A rs552359940 71460444 + 71460424 71460464 41 AGTCTCATAATCTGAAGGTCCTGAGTTCGAGCCTCAGAGAG AGTCTCATAATCTGAAGGTACTGAGTTCGAGCCTCAGAGAG < 41bp 1 0.642477461697812 1 0.141049325466156 experiment 0.715045076604376 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460444 chr16:71460443 . . 0 20 hm5C_associated_SNPs_11834 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_13913 DeepMRMD:1;iRNA_m5C:0.999536712157815 13914 chr16 71460443 71460443 1 + C A rs552359940 71460451 + 71460431 71460471 41 TAATCTGAAGGTCCTGAGTTCGAGCCTCAGAGAGGGCAGCT TAATCTGAAGGTACTGAGTTCGAGCCTCAGAGAGGGCAGCT < 41bp 1 0.392747151058484 1 0.196513921022415 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460451 chr16:71460443 . . 0 13 hm5C_associated_SNPs_11835 0 0 1 0 0 unknown 1 0.500231637828409 1 0.999536724343182 hm5C_site_13914 DeepMRMD:1;iRNA_m5C:0.999536724343182 13915 chr16 71460443 71460443 1 + C A rs552359940 71460455 + 71460435 71460475 41 CTGAAGGTCCTGAGTTCGAGCCTCAGAGAGGGCAGCTGTTT CTGAAGGTACTGAGTTCGAGCCTCAGAGAGGGCAGCTGTTT < 41bp 1 0.179899978235959 1 0.0823014080524445 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460455 chr16:71460443 . . 0 9 hm5C_associated_SNPs_11836 0 0 1 0 0 unknown 1 0.500231643970155 1 0.99953671205969 hm5C_site_13915 DeepMRMD:1;iRNA_m5C:0.99953671205969 13916 chr16 71460443 71460443 1 + C A rs552359940 71460458 + 71460438 71460478 41 AAGGTCCTGAGTTCGAGCCTCAGAGAGGGCAGCTGTTTTGT AAGGTACTGAGTTCGAGCCTCAGAGAGGGCAGCTGTTTTGT < 41bp 1 0.456598735878866 1 0.808641314506531 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460458 chr16:71460443 . . 0 6 hm5C_associated_SNPs_11837 0 0 1 0 0 unknown 1 0.500231643918315 0.382717370986938 0.99953671216337 hm5C_site_13916 DeepMRMD:0.382717370986938;iRNA_m5C:0.99953671216337 13917 chr16 71460449 71460449 1 + T A rs532051640 71460429 + 71460409 71460449 41 AGTGGGCAGCGCGTCAGTCTCATAATCTGAAGGTCCTGAGT AGTGGGCAGCGCGTCAGTCTCATAATCTGAAGGTCCTGAGA < 41bp 1 0.609010907939737 1 0.592382609844208 experiment 0.781978184120526 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460429 chr16:71460449 . . 0 41 hm5C_associated_SNPs_11838 0 0 1 0 0 unknown 1 0.500231643574559 0.815234780311584 0.999536712850882 hm5C_site_13917 DeepMRMD:0.815234780311584;iRNA_m5C:0.999536712850882 13918 chr16 71460449 71460449 1 + T A rs532051640 71460443 + 71460423 71460463 41 CAGTCTCATAATCTGAAGGTCCTGAGTTCGAGCCTCAGAGA CAGTCTCATAATCTGAAGGTCCTGAGATCGAGCCTCAGAGA < 41bp 1 0.306457270899622 1 0.0644101500511169 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460443 chr16:71460449 . . 0 27 hm5C_associated_SNPs_11839 0 0 1 0 0 unknown 1 0.500231533413095 1 0.999536933173809 hm5C_site_13918 DeepMRMD:1;iRNA_m5C:0.999536933173809 13919 chr16 71460449 71460449 1 + T A rs532051640 71460444 + 71460424 71460464 41 AGTCTCATAATCTGAAGGTCCTGAGTTCGAGCCTCAGAGAG AGTCTCATAATCTGAAGGTCCTGAGATCGAGCCTCAGAGAG < 41bp 1 0.614032597218174 1 0.231049239635468 experiment 0.771934805563651 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460444 chr16:71460449 . . 0 26 hm5C_associated_SNPs_11840 0 0 1 0 0 unknown 1 0.500231643921098 1 0.999536712157804 hm5C_site_13919 DeepMRMD:1;iRNA_m5C:0.999536712157804 13920 chr16 71460449 71460449 1 + T A rs532051640 71460451 + 71460431 71460471 41 TAATCTGAAGGTCCTGAGTTCGAGCCTCAGAGAGGGCAGCT TAATCTGAAGGTCCTGAGATCGAGCCTCAGAGAGGGCAGCT < 41bp 1 0.466157198149241 1 0.254592955112457 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460451 chr16:71460449 . . 0 19 hm5C_associated_SNPs_11841 0 0 1 0 0 unknown 1 0.500231614405725 1 0.999536771188549 hm5C_site_13920 DeepMRMD:1;iRNA_m5C:0.999536771188549 13921 chr16 71460449 71460449 1 + T A rs532051640 71460455 + 71460435 71460475 41 CTGAAGGTCCTGAGTTCGAGCCTCAGAGAGGGCAGCTGTTT CTGAAGGTCCTGAGATCGAGCCTCAGAGAGGGCAGCTGTTT < 41bp 1 0.187469287006785 1 0.121004343032837 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460455 chr16:71460449 . . 0 15 hm5C_associated_SNPs_11842 0 0 1 0 0 unknown 1 0.500231643923094 1 0.999536712153813 hm5C_site_13921 DeepMRMD:1;iRNA_m5C:0.999536712153813 13922 chr16 71460449 71460449 1 + T A rs532051640 71460458 + 71460438 71460478 41 AAGGTCCTGAGTTCGAGCCTCAGAGAGGGCAGCTGTTTTGT AAGGTCCTGAGATCGAGCCTCAGAGAGGGCAGCTGTTTTGT < 41bp 1 0.446870522869444 1 0.849709391593933 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460458 chr16:71460449 . . 0 12 hm5C_associated_SNPs_11843 0 0 1 0 0 unknown 1 0.500231643887753 0.300581216812134 0.999536712224494 hm5C_site_13922 DeepMRMD:0.300581216812134;iRNA_m5C:0.999536712224494 13923 chr16 71460455 71460455 1 + C A rs375616702 71460443 + 71460423 71460463 41 CAGTCTCATAATCTGAAGGTCCTGAGTTCGAGCCTCAGAGA CAGTCTCATAATCTGAAGGTCCTGAGTTCGAGACTCAGAGA < 41bp 1 0.327207009148165 1 0.0658527016639709 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460443 chr16:71460455 . . 0 33 hm5C_associated_SNPs_11844 0 0 1 0 0 unknown 1 0.500231643899232 1 0.999536712201537 hm5C_site_13923 DeepMRMD:1;iRNA_m5C:0.999536712201537 13924 chr16 71460455 71460455 1 + C A rs375616702 71460444 + 71460424 71460464 41 AGTCTCATAATCTGAAGGTCCTGAGTTCGAGCCTCAGAGAG AGTCTCATAATCTGAAGGTCCTGAGTTCGAGACTCAGAGAG < 41bp 1 0.638322999448608 1 0.31351637840271 experiment 0.723354001102785 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460444 chr16:71460455 . . 0 32 hm5C_associated_SNPs_11845 0 0 1 0 0 unknown 1 0.500231643921089 1 0.999536712157823 hm5C_site_13924 DeepMRMD:1;iRNA_m5C:0.999536712157823 13925 chr16 71460455 71460455 1 + C A rs375616702 71460458 + 71460438 71460478 41 AAGGTCCTGAGTTCGAGCCTCAGAGAGGGCAGCTGTTTTGT AAGGTCCTGAGTTCGAGACTCAGAGAGGGCAGCTGTTTTGT < 41bp 1 0.531589465082956 1 0.894986271858215 experiment 0.936821069834089 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460458 chr16:71460455 . . 0 18 hm5C_associated_SNPs_11847 0 0 1 0 0 unknown 1 0.500231629257645 0.21002745628357 0.99953674148471 hm5C_site_13925 DeepMRMD:0.21002745628357;iRNA_m5C:0.99953674148471 13926 chr16 71460467 71460467 1 + C T rs565821909 71460451 + 71460431 71460471 41 TAATCTGAAGGTCCTGAGTTCGAGCCTCAGAGAGGGCAGCT TAATCTGAAGGTCCTGAGTTCGAGCCTCAGAGAGGGTAGCT < 41bp 1 0.403564009365808 1 0.177345722913742 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460451 chr16:71460467 . . 0 37 hm5C_associated_SNPs_11848 0 0 1 0 0 unknown 1 0.500231643921229 1 0.999536712157542 hm5C_site_13926 DeepMRMD:1;iRNA_m5C:0.999536712157542 13927 chr16 71460467 71460467 1 + C T rs565821909 71460455 + 71460435 71460475 41 CTGAAGGTCCTGAGTTCGAGCCTCAGAGAGGGCAGCTGTTT CTGAAGGTCCTGAGTTCGAGCCTCAGAGAGGGTAGCTGTTT < 41bp 1 0.183632956880717 1 0.101344376802444 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460455 chr16:71460467 . . 0 33 hm5C_associated_SNPs_11849 0 0 1 0 0 unknown 1 0.500231643930191 1 0.999536712139617 hm5C_site_13927 DeepMRMD:1;iRNA_m5C:0.999536712139617 13928 chr16 71460467 71460467 1 + C T rs565821909 71460458 + 71460438 71460478 41 AAGGTCCTGAGTTCGAGCCTCAGAGAGGGCAGCTGTTTTGT AAGGTCCTGAGTTCGAGCCTCAGAGAGGGTAGCTGTTTTGT < 41bp 1 0.390325632674939 1 0.778688192367554 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC02136 ENSG00000261348 upstream Human lincRNA chr16:71460458 chr16:71460467 . . 0 30 hm5C_associated_SNPs_11850 0 0 1 0 0 unknown 1 0.500231636982511 0.442623615264892 0.999536726034978 hm5C_site_13928 DeepMRMD:0.442623615264892;iRNA_m5C:0.999536726034978 13929 chr16 71956505 71956505 1 + G A rs72801788 71956504 + 71956484 71956524 41 AGTTGGTGGACCTGATGGAACGGTGCCAATGCCCATGCCCA AGTTGGTGGACCTGATGGAACAGTGCCAATGCCCATGCCCA < 41bp 1 0.633728613577474 1 0.247315764427185 experiment 0.732542772845052 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IST1 ENSG00000182149 CDS Human protein_coding chr16:71956504 chr16:71956505 synonymous SNV . 0 22 hm5C_associated_SNPs_11851 0 0 1 2 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13929 DeepMRMD:1;iRNA_m5C:0.999536712157815 13930 chr16 72141640 72141640 1 + C A rs11554765 72141626 + 72141606 72141646 41 ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTACGAGAT < 41bp 1 0.642532989410761 1 0.210878521203995 experiment 0.714934021178478 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141626 chr16:72141640 nonsynonymous SNV 0.979 2 35 hm5C_associated_SNPs_11853 0 0 1 0 2 Cytosol 1 0.500231733029762 1 0.999536533940476 hm5C_site_13930 DeepMRMD:1;iRNA_m5C:0.999536533940476 13931 chr16 74339571 74339571 1 + G A rs531780153 74339565 + 74339545 74339585 41 AAAAAGGATAGGAAAGAGGACAAGGAGAAAGATAAAGATAA AAAAAGGATAGGAAAGAGGACAAGGAAAAAGATAAAGATAA < 41bp 1 0.551201467849256 1 0.405389219522476 experiment 0.897597064301488 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74339565 chr16:74339571 synonymous SNV . 0 27 hm5C_associated_SNPs_11854 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13931 DeepMRMD:1;iRNA_m5C:0.999536712157815 13932 chr16 75033679 75033679 1 + A T rs149929766 75033665 + 75033645 75033685 41 CCGCCGCCGGGAGGGGCGCCCCATTTCGGGCACTACCGGAC CCGCCGCCGGGAGGGGCGCCCCATTTCGGGCACTTCCGGAC < 41bp 1 0.208347655357468 1 0.0707085430622101 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNRF1 ENSG00000186187 CDS Human protein_coding chr16:75033665 chr16:75033679 nonsynonymous SNV 1.000 0 35 hm5C_associated_SNPs_11855 0 0 1 0 0 Ribosome 1 0.500231643964258 1 0.999536712071483 hm5C_site_13932 DeepMRMD:1;iRNA_m5C:0.999536712071483 13933 chr16 75033679 75033679 1 + A T rs149929766 75033677 + 75033657 75033697 41 GGGGCGCCCCATTTCGGGCACTACCGGACGGGCGGCGGGGC GGGGCGCCCCATTTCGGGCACTTCCGGACGGGCGGCGGGGC < 41bp 1 0.260607383412166 1 0.113227546215057 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNRF1 ENSG00000186187 CDS Human protein_coding chr16:75033677 chr16:75033679 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_11856 0 0 1 0 0 Ribosome 1 0.500231643925076 1 0.999536712149849 hm5C_site_13933 DeepMRMD:1;iRNA_m5C:0.999536712149849 13934 chr16 75256940 75256940 1 + G T rs570099637 75256925 + 75256905 75256945 41 CAGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCA CAGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGTGGTCA < 41bp 1 0.51384761273693 1 0.249959230422974 experiment 0.97230477452614 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256925 chr16:75256940 nonsynonymous SNV 0.922 2 36 hm5C_associated_SNPs_11857 0 0 0 0 2 exosome 1 0.500231656824892 1 0.999536686350216 hm5C_site_13934 DeepMRMD:1;iRNA_m5C:0.999536686350216 13935 chr16 75256940 75256940 1 + G T rs570099637 75256926 + 75256906 75256946 41 AGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAG AGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAG < 41bp 1 0.588746562038926 1 0.195542514324188 experiment 0.822506875922149 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256926 chr16:75256940 nonsynonymous SNV 0.922 2 35 hm5C_associated_SNPs_11858 0 0 0 0 2 exosome 1 0.500231641653783 1 0.999536716692434 hm5C_site_13935 DeepMRMD:1;iRNA_m5C:0.999536716692434 13936 chr16 75256940 75256940 1 + G T rs570099637 75256928 + 75256908 75256948 41 CGAGGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGT CGAGGACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGT < 41bp 1 0.410598392831484 1 0.110400527715683 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256928 chr16:75256940 nonsynonymous SNV 0.922 2 33 hm5C_associated_SNPs_11859 0 0 0 0 2 exosome 1 0.500231625903721 1 0.999536748192557 hm5C_site_13936 DeepMRMD:1;iRNA_m5C:0.999536748192557 13937 chr16 75256940 75256940 1 + G T rs570099637 75256931 + 75256911 75256951 41 GGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAG GGACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAG < 41bp 1 0.102831980400961 1 0.181226819753647 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256931 chr16:75256940 nonsynonymous SNV 0.922 2 30 hm5C_associated_SNPs_11860 0 0 0 0 2 exosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_13937 DeepMRMD:1;iRNA_m5C:0.999536712157813 13938 chr16 75256940 75256940 1 + G T rs570099637 75256932 + 75256912 75256952 41 GACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAGG GACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAGG < 41bp 1 0.217040632653735 1 0.151876419782639 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256932 chr16:75256940 nonsynonymous SNV 0.922 2 29 hm5C_associated_SNPs_11861 0 0 0 0 2 exosome 1 0.500231643923638 1 0.999536712152725 hm5C_site_13938 DeepMRMD:1;iRNA_m5C:0.999536712152725 13939 chr16 75256940 75256940 1 + G T rs570099637 75256933 + 75256913 75256953 41 ACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAGGA ACTGGGTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAGGA < 41bp 1 0.38778444783051 1 0.0821460783481598 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256933 chr16:75256940 nonsynonymous SNV 0.922 2 28 hm5C_associated_SNPs_11862 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13939 DeepMRMD:1;iRNA_m5C:0.999536712157815 13940 chr16 75256940 75256940 1 + G T rs570099637 75256938 + 75256918 75256958 41 GTGGTCACCGCTGCCCACTGCGGGGTCAGGTGAGGACCGGG GTGGTCACCGCTGCCCACTGCGTGGTCAGGTGAGGACCGGG < 41bp 1 0.527543492692527 1 0.591456115245819 experiment 0.944913014614946 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256938 chr16:75256940 nonsynonymous SNV 0.922 2 23 hm5C_associated_SNPs_11864 0 0 0 0 2 exosome 1 0.500235534296191 0.817087769508362 0.999528931407619 hm5C_site_13940 DeepMRMD:0.817087769508362;iRNA_m5C:0.999528931407619 13941 chr16 75257049 75257049 1 + G A rs549396142 75257041 + 75257021 75257061 41 CCACAACGCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTG CCACAACGCTCTGCCCAGGACCTCCGACATGGTCGTGGCTG < 41bp 1 0.0535596343145792 1 0.0291597545146942 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257041 chr16:75257049 nonsynonymous SNV 0.000 1 29 hm5C_associated_SNPs_11865 0 0 0 0 2 exosome 1 0.500231555230587 1 0.999536889538826 hm5C_site_13941 DeepMRMD:1;iRNA_m5C:0.999536889538826 13942 chr16 75257049 75257049 1 + G A rs549396142 75257042 + 75257022 75257062 41 CACAACGCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTGG CACAACGCTCTGCCCAGGACCTCCGACATGGTCGTGGCTGG < 41bp 1 0.470800009205357 1 0.812986254692078 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257042 chr16:75257049 nonsynonymous SNV 0.000 1 28 hm5C_associated_SNPs_11866 0 0 0 0 2 exosome 1 0.500231570533347 0.374027490615844 0.999536858933307 hm5C_site_13942 DeepMRMD:0.374027490615844;iRNA_m5C:0.999536858933307 13943 chr16 75257049 75257049 1 + G A rs549396142 75257044 + 75257024 75257064 41 CAACGCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTGGGG CAACGCTCTGCCCAGGACCTCCGACATGGTCGTGGCTGGGG < 41bp 1 0.118097669243064 1 0.572396636009216 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257044 chr16:75257049 nonsynonymous SNV 0.000 1 26 hm5C_associated_SNPs_11867 0 0 0 0 2 exosome 1 0.500231643921989 0.855206727981568 0.999536712156023 hm5C_site_13943 DeepMRMD:0.855206727981568;iRNA_m5C:0.999536712156023 13944 chr16 75257049 75257049 1 + G A rs549396142 75257045 + 75257025 75257065 41 AACGCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTGGGGA AACGCTCTGCCCAGGACCTCCGACATGGTCGTGGCTGGGGA < 41bp 1 0.637223730155864 1 0.868939697742462 experiment 0.725552539688272 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257045 chr16:75257049 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_11868 0 0 0 0 2 exosome 1 0.500231643930442 0.262120604515076 0.999536712139116 hm5C_site_13944 DeepMRMD:0.262120604515076;iRNA_m5C:0.999536712139116 13945 chr16 75257049 75257049 1 + G A rs549396142 75257048 + 75257028 75257068 41 GCTCTGCCCAGGACCTCCGACGTGGTCGTGGCTGGGGAGTT GCTCTGCCCAGGACCTCCGACATGGTCGTGGCTGGGGAGTT < 41bp 1 0.352348075631155 1 0.17699334025383 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257048 chr16:75257049 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_11869 0 0 0 0 2 exosome 1 0.500231643921144 1 0.999536712157713 hm5C_site_13945 DeepMRMD:1;iRNA_m5C:0.999536712157713 13946 chr16 75257049 75257049 1 + G A rs549396142 75257054 + 75257034 75257074 41 CCCAGGACCTCCGACGTGGTCGTGGCTGGGGAGTTTGACCA CCCAGGACCTCCGACATGGTCGTGGCTGGGGAGTTTGACCA < 41bp 1 0.631763787708526 1 0.414403408765793 experiment 0.736472424582948 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257054 chr16:75257049 nonsynonymous SNV 0.000 1 16 hm5C_associated_SNPs_11870 0 0 0 0 2 exosome 1 0.500231643906728 1 0.999536712186545 hm5C_site_13946 DeepMRMD:1;iRNA_m5C:0.999536712186545 13947 chr16 75257049 75257049 1 + G A rs549396142 75257059 + 75257039 75257079 41 GACCTCCGACGTGGTCGTGGCTGGGGAGTTTGACCAGGGCT GACCTCCGACATGGTCGTGGCTGGGGAGTTTGACCAGGGCT < 41bp 1 0.693049923915042 1 0.747194528579712 experiment 0.613900152169917 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75257059 chr16:75257049 nonsynonymous SNV 0.000 1 11 hm5C_associated_SNPs_11871 0 0 0 0 2 exosome 1 0.500231643970436 0.505610942840576 0.999536712059129 hm5C_site_13947 DeepMRMD:0.505610942840576;iRNA_m5C:0.999536712059129 13948 chr16 75600365 75600365 1 + G A rs8192515 75600370 + 75600350 75600390 41 CCGCGAGCCGGTTCCGTCCCCTTCCCGCCGCCGCCATGAAG CCGCGAGCCGGTTCCATCCCCTTCCCGCCGCCGCCATGAAG < 41bp 1 0.471884420433644 1 0.114494800567627 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GABARAPL2 ENSG00000259992 ncRNA_intronic Human processed_transcript chr16:75600370 chr16:75600365 . . 0 16 hm5C_associated_SNPs_11872 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_13948 DeepMRMD:1;iRNA_m5C:0.999536712157815 13949 chr16 75600380 75600380 1 + C T rs201335061 75600370 + 75600350 75600390 41 CCGCGAGCCGGTTCCGTCCCCTTCCCGCCGCCGCCATGAAG CCGCGAGCCGGTTCCGTCCCCTTCCCGCCGTCGCCATGAAG < 41bp 1 0.457312810569117 1 0.0886068344116211 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GABARAPL2 ENSG00000259992 ncRNA_intronic Human processed_transcript chr16:75600370 chr16:75600380 . . 0 31 hm5C_associated_SNPs_11873 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13949 DeepMRMD:1;iRNA_m5C:0.999536712157815 13950 chr16 77224889 77224889 1 + G A rs2232498 77224895 + 77224875 77224915 41 CAGATCCGTTGAAAGGAGTGCAGAGAGGTCTCATTGCGCTC CAGATCCGTTGAAAAGAGTGCAGAGAGGTCTCATTGCGCTC < 41bp 1 0.314156357550191 1 0.418245881795883 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON1B ENSG00000103111 UTR5 Human protein_coding chr16:77224895 chr16:77224889 . . 0 15 hm5C_associated_SNPs_11874 0 0 1 0 0 Ribosome 1 0.500231643921267 1 0.999536712157466 hm5C_site_13950 DeepMRMD:1;iRNA_m5C:0.999536712157466 13951 chr16 77775672 77775672 1 + A G rs16946429 77775688 + 77775668 77775708 41 CCTGAAGACGGTGTCACTTACCAGATCAAGGGAATGACGGC CCTGGAGACGGTGTCACTTACCAGATCAAGGGAATGACGGC < 41bp 1 0.695058844107901 1 0.490426599979401 experiment 0.609882311784197 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77775688 chr16:77775672 nonsynonymous SNV 0.100 3 5 hm5C_associated_SNPs_11875 0 0 1 0 0 nucleoplasm 1 0.500231643912393 1 0.999536712175213 hm5C_site_13951 DeepMRMD:1;iRNA_m5C:0.999536712175213 13952 chr16 77775672 77775672 1 + A G rs16946429 77775689 + 77775669 77775709 41 CTGAAGACGGTGTCACTTACCAGATCAAGGGAATGACGGCA CTGGAGACGGTGTCACTTACCAGATCAAGGGAATGACGGCA < 41bp 1 0.528511950168146 1 0.733084857463837 experiment 0.942976099663707 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77775689 chr16:77775672 nonsynonymous SNV 0.100 3 4 hm5C_associated_SNPs_11876 0 0 1 0 0 nucleoplasm 1 0.500231643902846 0.533830285072326 0.999536712194308 hm5C_site_13952 DeepMRMD:0.533830285072326;iRNA_m5C:0.999536712194308 13953 chr16 81040408 81040408 1 + C G rs116659561 81040419 + 81040399 81040439 41 GAAGGCCGGCTGCTAGGGAGCAGACAGCTGAACCGCTTGCC GAAGGCCGGGTGCTAGGGAGCAGACAGCTGAACCGCTTGCC < 41bp 1 0.53319094572578 1 0.754189252853394 experiment 0.933618108548441 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CENPN;CMC2 ENSG00000103121;ENSG00000166451 UTR5 Human other chr16:81040419 chr16:81040408 . . 0 10 hm5C_associated_SNPs_11877 0 0 0 0 0 unknown 1 0.500231643921091 0.491621494293212 0.999536712157817 hm5C_site_13953 DeepMRMD:0.491621494293212;iRNA_m5C:0.999536712157817 13954 chr16 81040425 81040425 1 + G A rs150618251 81040419 + 81040399 81040439 41 GAAGGCCGGCTGCTAGGGAGCAGACAGCTGAACCGCTTGCC GAAGGCCGGCTGCTAGGGAGCAGACAACTGAACCGCTTGCC < 41bp 1 0.51449332227399 1 0.619011759757996 experiment 0.971013355452019 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CENPN;CMC2 ENSG00000103121;ENSG00000166451 UTR5 Human other chr16:81040419 chr16:81040425 . . 0 27 hm5C_associated_SNPs_11878 0 0 0 0 0 unknown 1 0.500231643923301 0.761976480484008 0.999536712153398 hm5C_site_13954 DeepMRMD:0.761976480484008;iRNA_m5C:0.999536712153398 13955 chr16 81040431 81040431 1 + C T rs114304318 81040419 + 81040399 81040439 41 GAAGGCCGGCTGCTAGGGAGCAGACAGCTGAACCGCTTGCC GAAGGCCGGCTGCTAGGGAGCAGACAGCTGAATCGCTTGCC < 41bp 1 0.500934989578422 1 0.499368935823441 experiment 0.998130020843156 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CENPN;CMC2 ENSG00000103121;ENSG00000166451 UTR5 Human other chr16:81040419 chr16:81040431 . . 0 33 hm5C_associated_SNPs_11879 0 0 0 0 0 unknown 1 0.500231643917901 1 0.999536712164198 hm5C_site_13955 DeepMRMD:1;iRNA_m5C:0.999536712164198 13956 chr16 81040555 81040555 1 + G T rs2287991 81040546 + 81040526 81040566 41 CGCCGCCTGTCCTGGAGGGGCCCATTTCCGTCCGTCGTGGG CGCCGCCTGTCCTGGAGGGGCCCATTTCCTTCCGTCGTGGG < 41bp 1 0.240727891390246 1 0.140719145536423 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPN ENSG00000103121;ENSG00000166451 UTR5 Human other chr16:81040546 chr16:81040555 . . 0 30 hm5C_associated_SNPs_11880 0 0 0 0 0 Ribosome 1 0.500231649208591 1 0.999536701582818 hm5C_site_13956 DeepMRMD:1;iRNA_m5C:0.999536701582818 13957 chr16 81040555 81040555 1 + G T rs2287991 81040547 + 81040527 81040567 41 GCCGCCTGTCCTGGAGGGGCCCATTTCCGTCCGTCGTGGGG GCCGCCTGTCCTGGAGGGGCCCATTTCCTTCCGTCGTGGGG < 41bp 1 0.144520474614344 1 0.0986680388450623 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPN ENSG00000103121;ENSG00000166451 UTR5 Human other chr16:81040547 chr16:81040555 . . 0 29 hm5C_associated_SNPs_11881 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_13957 DeepMRMD:1;iRNA_m5C:0.999536712157815 13958 chr16 81040555 81040555 1 + G T rs2287991 81040548 + 81040528 81040568 41 CCGCCTGTCCTGGAGGGGCCCATTTCCGTCCGTCGTGGGGG CCGCCTGTCCTGGAGGGGCCCATTTCCTTCCGTCGTGGGGG < 41bp 1 0.15720449071498 1 0.16582852602005 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPN ENSG00000103121;ENSG00000166451 UTR5 Human other chr16:81040548 chr16:81040555 . . 0 28 hm5C_associated_SNPs_11882 0 0 0 0 0 Ribosome 1 0.500231643933294 1 0.999536712133413 hm5C_site_13958 DeepMRMD:1;iRNA_m5C:0.999536712133413 13959 chr16 81040564 81040564 1 + G T rs113366466 81040546 + 81040526 81040566 41 CGCCGCCTGTCCTGGAGGGGCCCATTTCCGTCCGTCGTGGG CGCCGCCTGTCCTGGAGGGGCCCATTTCCGTCCGTCGTTGG < 41bp 1 0.29070739262861 1 0.112002432346344 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPN ENSG00000103121;ENSG00000166451 UTR5 Human other chr16:81040546 chr16:81040564 . . 0 39 hm5C_associated_SNPs_11883 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_13959 DeepMRMD:1;iRNA_m5C:0.999536712157816 13960 chr16 81040564 81040564 1 + G T rs113366466 81040547 + 81040527 81040567 41 GCCGCCTGTCCTGGAGGGGCCCATTTCCGTCCGTCGTGGGG GCCGCCTGTCCTGGAGGGGCCCATTTCCGTCCGTCGTTGGG < 41bp 1 0.146493924266385 1 0.0494734048843384 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPN ENSG00000103121;ENSG00000166451 UTR5 Human other chr16:81040547 chr16:81040564 . . 0 38 hm5C_associated_SNPs_11884 0 0 0 0 0 Ribosome 1 0.500231643893065 1 0.99953671221387 hm5C_site_13960 DeepMRMD:1;iRNA_m5C:0.99953671221387 13961 chr16 81040564 81040564 1 + G T rs113366466 81040548 + 81040528 81040568 41 CCGCCTGTCCTGGAGGGGCCCATTTCCGTCCGTCGTGGGGG CCGCCTGTCCTGGAGGGGCCCATTTCCGTCCGTCGTTGGGG < 41bp 1 0.161058278168072 1 0.114855945110321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPN ENSG00000103121;ENSG00000166451 UTR5 Human other chr16:81040548 chr16:81040564 . . 0 37 hm5C_associated_SNPs_11885 0 0 0 0 0 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_13961 DeepMRMD:1;iRNA_m5C:0.99953671215782 13962 chr16 81077204 81077204 1 + T A rs16954513 81077198 + 81077178 81077218 41 GCTTGCTCTCTTAAGGAGAGCCTACCTCTTTTCAAAATTGC GCTTGCTCTCTTAAGGAGAGCCTACCACTTTTCAAAATTGC < 41bp 1 0.0133379810204117 1 0.032843679189682 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81077198 chr16:81077204 synonymous SNV . 0 27 hm5C_associated_SNPs_11886 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13962 DeepMRMD:1;iRNA_m5C:0.999536712157815 13963 chr16 81078081 81078081 1 + A G rs36040615 81078069 + 81078049 81078089 41 CTCAAACTGAAGAGAGTGAACTTAGCACCATGACCACCGAG CTCAAACTGAAGAGAGTGAACTTAGCACCATGGCCACCGAG < 41bp 1 0.380812328227647 1 0.179909020662308 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81078069 chr16:81078081 nonsynonymous SNV 0.829 0 33 hm5C_associated_SNPs_11887 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13963 DeepMRMD:1;iRNA_m5C:0.999536712157815 13964 chr16 81079330 81079330 1 + C A rs146931181 81079348 + 81079328 81079368 41 ATCCCAGCACTTTGGGAGGCCAAAGCAGGACGATCACTTGA ATACCAGCACTTTGGGAGGCCAAAGCAGGACGATCACTTGA < 41bp 1 0.698667639682964 1 0.458198130130768 experiment 0.602664720634073 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATMIN ENSG00000166454 UTR3 Human protein_coding chr16:81079348 chr16:81079330 . . 0 3 hm5C_associated_SNPs_11889 0 0 0 0 0 Cytosol 1 0.500231643905669 1 0.999536712188662 hm5C_site_13964 DeepMRMD:1;iRNA_m5C:0.999536712188662 13965 chr16 81743787 81743787 1 + G A rs116642623 81743772 + 81743752 81743792 41 GGGAAAAGTCAACTCCGATGCCACCATTGCGGGCCGGACGA GGGAAAAGTCAACTCCGATGCCACCATTGCGGGCCAGACGA < 41bp 1 0.0903722239424932 1 0.203680753707886 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CMIP ENSG00000153815 UTR3 Human protein_coding chr16:81743772 chr16:81743787 . . 0 36 hm5C_associated_SNPs_11891 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13965 DeepMRMD:1;iRNA_m5C:0.999536712157815 13966 chr16 83841560 83841560 1 + G C rs3743623 83841578 + 83841558 83841598 41 ATGCCCCGCGGTCCCGCGAGCTGCCAGTCTCGTCGCGAGAA ATCCCCCGCGGTCCCGCGAGCTGCCAGTCTCGTCGCGAGAA < 41bp 1 0.547233880812397 1 0.0779493451118469 experiment 0.905532238375205 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1 ENSG00000230989 UTR5 Human protein_coding chr16:83841578 chr16:83841560 . . 0 3 hm5C_associated_SNPs_11892 0 0 1 0 0 Ribosome 1 0.500231645246608 1 0.999536709506784 hm5C_site_13966 DeepMRMD:1;iRNA_m5C:0.999536709506784 13967 chr16 83845980 83845980 1 + T G rs180677200 83845960 + 83845940 83845980 41 AAAACACTATTTTACTTAAACTGTTTCTTATCTAAATTCTT AAAACACTATTTTACTTAAACTGTTTCTTATCTAAATTCTG < 41bp 1 0.198374750726224 1 0.0442304015159607 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSBP1 ENSG00000230989 UTR3 Human protein_coding chr16:83845960 chr16:83845980 . . 0 41 hm5C_associated_SNPs_11893 0 0 1 1 0 Ribosome 1 0.500231503625687 1 0.999536992748626 hm5C_site_13967 DeepMRMD:1;iRNA_m5C:0.999536992748626 13968 chr16 83998995 83998995 1 + G A rs150791768 83999000 + 83998980 83999020 41 GAGCTGTCTGCCCTGGAGGCCGCCACAAGGGTGGGTGCGGT GAGCTGTCTGCCCTGAAGGCCGCCACAAGGGTGGGTGCGGT < 41bp 1 0.560909247095493 1 0.906200170516968 experiment 0.878181505809013 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83999000 chr16:83998995 nonsynonymous SNV 0.200 3 16 hm5C_associated_SNPs_11894 0 0 0 0 0 chromatin 1 0.500231643921003 0.187599658966064 0.999536712157994 hm5C_site_13968 DeepMRMD:0.187599658966064;iRNA_m5C:0.999536712157994 13969 chr16 84036154 84036154 1 + T C rs114658873 84036153 + 84036133 84036173 41 AGTGTCTGTGCTGCCAGGTCCTGGTGAAGCCCAAGGTTGAA AGTGTCTGTGCTGCCAGGTCCCGGTGAAGCCCAAGGTTGAA < 41bp 1 0.536104654881927 1 0.636168479919434 experiment 0.927790690236146 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NECAB2 ENSG00000103154 UTR3 Human protein_coding chr16:84036153 chr16:84036154 . . 0 22 hm5C_associated_SNPs_11895 0 0 1 0 0 exosome 1 0.500231641747379 0.727663040161132 0.999536716505242 hm5C_site_13969 DeepMRMD:0.727663040161132;iRNA_m5C:0.999536716505242 13970 chr16 84036155 84036155 1 + G A rs557940561 84036153 + 84036133 84036173 41 AGTGTCTGTGCTGCCAGGTCCTGGTGAAGCCCAAGGTTGAA AGTGTCTGTGCTGCCAGGTCCTAGTGAAGCCCAAGGTTGAA < 41bp 1 0.610169533665338 1 0.367743790149689 experiment 0.779660932669324 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NECAB2 ENSG00000103154 UTR3 Human protein_coding chr16:84036153 chr16:84036155 . . 0 23 hm5C_associated_SNPs_11896 0 0 1 0 0 exosome 1 0.500231643236062 1 0.999536713527875 hm5C_site_13970 DeepMRMD:1;iRNA_m5C:0.999536713527875 13971 chr16 84684525 84684525 1 + G A rs79842977 84684521 + 84684501 84684541 41 GTGTCTCGGCCATACAAGATCAGCGAATCATCAAAGGTCTG GTGTCTCGGCCATACAAGATCAGCAAATCATCAAAGGTCTG < 41bp 1 0.628818883503488 1 0.0893419086933136 experiment 0.742362232993024 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84684521 chr16:84684525 nonsynonymous SNV 0.933 1 25 hm5C_associated_SNPs_11900 0 0 0 0 2 chromatin 1 0.500231616368786 1 0.999536767262427 hm5C_site_13971 DeepMRMD:1;iRNA_m5C:0.999536767262427 13972 chr16 84697888 84697888 1 + C T rs11555907 84697903 + 84697883 84697923 41 ACAAACGGGCAGTTGTTTGGCCTGAATCTCGGGGCAAGTTG ACAAATGGGCAGTTGTTTGGCCTGAATCTCGGGGCAAGTTG < 41bp 1 0.328126053734231 1 0.0392301380634308 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KLHL36 ENSG00000135686;ENSG00000103194 intergenic Human other chr16:84697903 chr16:84697888 . . 0 6 hm5C_associated_SNPs_11901 0 0 1 0 0 chromatin 1 0.500231643232357 1 0.999536713535286 hm5C_site_13972 DeepMRMD:1;iRNA_m5C:0.999536713535286 13973 chr16 84697912 84697912 1 + C T rs3803625 84697903 + 84697883 84697923 41 ACAAACGGGCAGTTGTTTGGCCTGAATCTCGGGGCAAGTTG ACAAACGGGCAGTTGTTTGGCCTGAATCTTGGGGCAAGTTG < 41bp 1 0.30276065975164 1 0.0786368846893311 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KLHL36 ENSG00000135686;ENSG00000103194 intergenic Human other chr16:84697903 chr16:84697912 . . 0 30 hm5C_associated_SNPs_11902 0 0 1 0 0 chromatin 1 0.500231643867395 1 0.999536712265209 hm5C_site_13973 DeepMRMD:1;iRNA_m5C:0.999536712265209 13974 chr16 84697912 84697912 1 + C T rs3803625 84697910 + 84697890 84697930 41 GGCAGTTGTTTGGCCTGAATCTCGGGGCAAGTTGGGGAGAG GGCAGTTGTTTGGCCTGAATCTTGGGGCAAGTTGGGGAGAG < 41bp 1 0.567096639807771 1 0.705483973026276 experiment 0.865806720384458 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KLHL36 ENSG00000135686;ENSG00000103194 intergenic Human other chr16:84697910 chr16:84697912 . . 0 23 hm5C_associated_SNPs_11903 0 0 1 0 0 chromatin 1 0.50023164392109 0.589032053947448 0.999536712157819 hm5C_site_13974 DeepMRMD:0.589032053947448;iRNA_m5C:0.999536712157819 13975 chr16 84697912 84697912 1 + C T rs3803625 84697917 + 84697897 84697937 41 GTTTGGCCTGAATCTCGGGGCAAGTTGGGGAGAGCACATAG GTTTGGCCTGAATCTTGGGGCAAGTTGGGGAGAGCACATAG < 41bp 1 0.516978212852642 1 0.0891420245170593 experiment 0.966043574294716 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KLHL36 ENSG00000135686;ENSG00000103194 intergenic Human other chr16:84697917 chr16:84697912 . . 0 16 hm5C_associated_SNPs_11904 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_13975 DeepMRMD:1;iRNA_m5C:0.999536712157815 13976 chr16 84697925 84697925 1 + G T rs77019536 84697917 + 84697897 84697937 41 GTTTGGCCTGAATCTCGGGGCAAGTTGGGGAGAGCACATAG GTTTGGCCTGAATCTCGGGGCAAGTTGGTGAGAGCACATAG < 41bp 1 0.446702405284302 1 0.0471181273460388 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KLHL36 ENSG00000135686;ENSG00000103194 intergenic Human other chr16:84697917 chr16:84697925 . . 0 29 hm5C_associated_SNPs_11906 0 0 1 0 0 chromatin 1 0.500231643921098 1 0.999536712157805 hm5C_site_13976 DeepMRMD:1;iRNA_m5C:0.999536712157805 13977 chr16 84853622 84853622 1 + T C rs2172623 84853629 + 84853609 84853649 41 CTCCGGCTGCTCCTATTGAGCTGTCTGCTCGCTGTGCCCGC CTCCGGCTGCTCCCATTGAGCTGTCTGCTCGCTGTGCCCGC < 41bp 1 0.274643759980489 1 0.309852540493011 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRISPLD2 ENSG00000103196 UTR5 Human protein_coding chr16:84853629 chr16:84853622 . . 0 14 hm5C_associated_SNPs_11907 0 0 0 0 0 Nucleus 1 0.500231643910887 1 0.999536712178226 hm5C_site_13977 DeepMRMD:1;iRNA_m5C:0.999536712178226 13978 chr16 84884200 84884200 1 + C T rs34925006 84884208 + 84884188 84884228 41 CACCAACAAGATCGGTTGTGCTGTGAACACCTGCCGGAAGA CACCAACAAGATTGGTTGTGCTGTGAACACCTGCCGGAAGA < 41bp 1 0.272559171488552 1 0.111455500125885 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84884208 chr16:84884200 synonymous SNV . 0 13 hm5C_associated_SNPs_11908 0 0 0 0 2 Nucleus 1 0.500226094555303 1 0.999547810889394 hm5C_site_13978 DeepMRMD:1;iRNA_m5C:0.999547810889394 13979 chr16 85123981 85123981 1 + C T rs143371721 85123987 + 85123967 85124007 41 CAGACTTTGTTCTGCGGTGCCCACAGGACTTACCCCTGTAT CAGACTTTGTTCTGTGGTGCCCACAGGACTTACCCCTGTAT < 41bp 1 0.107204878795932 1 0.405264496803284 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA0513 ENSG00000135709 UTR3 Human protein_coding chr16:85123987 chr16:85123981 . . 0 15 hm5C_associated_SNPs_11909 0 0 0 0 0 Nucleus 1 0.500231643622806 1 0.999536712754387 hm5C_site_13979 DeepMRMD:1;iRNA_m5C:0.999536712754387 13980 chr16 85126460 85126460 1 + C T rs16975222 85126466 + 85126446 85126486 41 GGAACCCTTGCTGCCGCGGGCCAGGAACAGGAATGTGTTGG GGAACCCTTGCTGCTGCGGGCCAGGAACAGGAATGTGTTGG < 41bp 1 0.384629054471355 1 0.461872190237045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA0513 ENSG00000135709 UTR3 Human protein_coding chr16:85126466 chr16:85126460 . . 0 15 hm5C_associated_SNPs_11910 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_13980 DeepMRMD:1;iRNA_m5C:0.999536712157815 13981 chr16 85689392 85689392 1 + C A rs138993136 85689403 + 85689383 85689423 41 CCCCACCCCCGGCTCCCTGCCCCCACTGCACCCATCAGCGA CCCCACCCCAGGCTCCCTGCCCCCACTGCACCCATCAGCGA < 41bp 1 0.475137875990398 1 0.306521832942963 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85689403 chr16:85689392 synonymous SNV . 0 10 hm5C_associated_SNPs_11911 0 0 1 0 1 Cytosol 1 0.500231629112517 1 0.999536741774966 hm5C_site_13981 DeepMRMD:1;iRNA_m5C:0.999536741774966 13982 chr16 85691168 85691168 1 + C T rs546732682 85691160 + 85691140 85691180 41 GAGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGA GAGCAGCACCTGGATATGGGCCGGCCCCTGGTGCCGGCGGA < 41bp 1 0.357067618917259 1 0.485369980335236 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691160 chr16:85691168 nonsynonymous SNV 0.548 0 29 hm5C_associated_SNPs_11912 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_13982 DeepMRMD:1;iRNA_m5C:0.999536712157815 13983 chr16 85691168 85691168 1 + C T rs546732682 85691161 + 85691141 85691181 41 AGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGAG AGCAGCACCTGGATATGGGCCGGCCCCTGGTGCCGGCGGAG < 41bp 1 0.326027894053045 1 0.650067746639252 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691161 chr16:85691168 nonsynonymous SNV 0.548 0 28 hm5C_associated_SNPs_11913 0 0 1 0 1 Cytosol 1 0.500231643921185 0.699864506721496 0.99953671215763 hm5C_site_13983 DeepMRMD:0.699864506721496;iRNA_m5C:0.99953671215763 13984 chr16 85691168 85691168 1 + C T rs546732682 85691173 + 85691153 85691193 41 ATATGGGCCGGCCCCCGGTGCCGGCGGAGGCAGAGCACAGG ATATGGGCCGGCCCCTGGTGCCGGCGGAGGCAGAGCACAGG < 41bp 1 0.272582259570125 1 0.692564606666565 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691173 chr16:85691168 nonsynonymous SNV 0.548 0 16 hm5C_associated_SNPs_11915 0 0 1 0 1 Cytosol 1 0.500231643916738 0.61487078666687 0.999536712166524 hm5C_site_13984 DeepMRMD:0.61487078666687;iRNA_m5C:0.999536712166524 13985 chr16 85707326 85707326 1 + A G rs534276197 85707307 + 85707287 85707327 41 CCCCTGCCTGCCCCCAGCATCTGGACAAGCTAATAGCAAAT CCCCTGCCTGCCCCCAGCATCTGGACAAGCTAATAGCAAGT < 41bp 1 0.684729402823602 1 0.810167074203491 experiment 0.630541194352797 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSE1 ENSG00000131149 UTR3 Human protein_coding chr16:85707307 chr16:85707326 . . 0 40 hm5C_associated_SNPs_11917 0 0 1 0 0 Cytosol 1 0.500231643921092 0.379665851593018 0.999536712157815 hm5C_site_13985 DeepMRMD:0.379665851593018;iRNA_m5C:0.999536712157815 13986 chr16 85833295 85833295 1 + C G rs2233447 85833301 + 85833281 85833321 41 CTCCGCGGCGCGGCCTTGCTCTCTTCCGGTCGCGGGACACC CTCCGCGGCGCGGCGTTGCTCTCTTCCGGTCGCGGGACACC < 41bp 1 0.475556258555974 1 0.100087255239487 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COX4I1 ENSG00000131143 UTR5 Human protein_coding chr16:85833301 chr16:85833295 . . 0 15 hm5C_associated_SNPs_11918 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13986 DeepMRMD:1;iRNA_m5C:0.999536712157815 13987 chr16 85833314 85833314 1 + G A rs2233446 85833301 + 85833281 85833321 41 CTCCGCGGCGCGGCCTTGCTCTCTTCCGGTCGCGGGACACC CTCCGCGGCGCGGCCTTGCTCTCTTCCGGTCGCAGGACACC < 41bp 1 0.467724598373413 1 0.169442117214203 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COX4I1 ENSG00000131143 UTR5 Human protein_coding chr16:85833301 chr16:85833314 . . 0 34 hm5C_associated_SNPs_11919 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_13987 DeepMRMD:1;iRNA_m5C:0.999536712157815 13988 chr16 86602305 86602305 1 + A C rs138612549 86602310 + 86602290 86602330 41 TGCGGGAGATGTTCAACTCCCACCGGCTGGGGATTGAGAAC TGCGGGAGATGTTCACCTCCCACCGGCTGGGGATTGAGAAC < 41bp 1 0.506354225025084 1 0.511304438114166 experiment 0.987291549949831 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FOXC2 ENSG00000176692 CDS Human protein_coding chr16:86602310 chr16:86602305 nonsynonymous SNV 0.990 0 16 hm5C_associated_SNPs_11921 0 0 0 0 0 exosome 1 0.500231770853471 0.977391123771668 0.999536458293058 hm5C_site_13988 DeepMRMD:0.977391123771668;iRNA_m5C:0.999536458293058 13989 chr16 88495407 88495407 1 + G C rs7199961 88495410 + 88495390 88495430 41 GCCTTTCCCCGCGGGGGGCCCCGAGTGGCAGGGGGGCAGCC GCCTTTCCCCGCGGGGGCCCCCGAGTGGCAGGGGGGCAGCC < 41bp 1 0.233712591017128 1 0.66734105348587 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88495410 chr16:88495407 nonsynonymous SNV 0.000 0 18 hm5C_associated_SNPs_11923 2 0 0 0 0 exosome 1 0.500231643921092 0.66531789302826 0.999536712157815 hm5C_site_13989 DeepMRMD:0.66531789302826;iRNA_m5C:0.999536712157815 Corneal fragility keratoglobus, blue sclerae AND joint hypermobility Corneal fragility keratoglobus, blue sclerae AND joint hypermobility 13990 chr16 88495407 88495407 1 + G C rs7199961 88495411 + 88495391 88495431 41 CCTTTCCCCGCGGGGGGCCCCGAGTGGCAGGGGGGCAGCCA CCTTTCCCCGCGGGGGCCCCCGAGTGGCAGGGGGGCAGCCA < 41bp 1 0.527111427727172 1 0.878608345985413 experiment 0.945777144545657 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88495411 chr16:88495407 nonsynonymous SNV 0.000 0 17 hm5C_associated_SNPs_11924 2 0 0 0 0 exosome 1 0.500231644024533 0.242783308029174 0.999536711950934 hm5C_site_13990 DeepMRMD:0.242783308029174;iRNA_m5C:0.999536711950934 Corneal fragility keratoglobus, blue sclerae AND joint hypermobility Corneal fragility keratoglobus, blue sclerae AND joint hypermobility 13991 chr16 88495407 88495407 1 + G C rs7199961 88495418 + 88495398 88495438 41 CCGCGGGGGGCCCCGAGTGGCAGGGGGGCAGCCAAGGAGCC CCGCGGGGGCCCCCGAGTGGCAGGGGGGCAGCCAAGGAGCC < 41bp 1 0.664352708538375 1 0.882985472679138 experiment 0.67129458292325 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88495418 chr16:88495407 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_11925 2 0 0 0 0 exosome 1 0.500231643921092 0.234029054641724 0.999536712157815 hm5C_site_13991 DeepMRMD:0.234029054641724;iRNA_m5C:0.999536712157815 Corneal fragility keratoglobus, blue sclerae AND joint hypermobility Corneal fragility keratoglobus, blue sclerae AND joint hypermobility 13992 chr16 88498804 88498804 1 + G A rs117310292 88498824 + 88498804 88498844 41 GGCTGTGGCCACCGTGGAAGCGGTTCAGGGGAGGCCTGGGG AGCTGTGGCCACCGTGGAAGCGGTTCAGGGGAGGCCTGGGG < 41bp 1 0.214893959208385 1 0.671915531158447 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88498824 chr16:88498804 synonymous SNV . 0 1 hm5C_associated_SNPs_11926 2 0 0 0 0 exosome 1 0.500231643921092 0.656168937683106 0.999536712157815 hm5C_site_13992 DeepMRMD:0.656168937683106;iRNA_m5C:0.999536712157815 Corneal fragility keratoglobus, blue sclerae AND joint hypermobility Corneal fragility keratoglobus, blue sclerae AND joint hypermobility 13993 chr16 88504315 88504315 1 + G A rs534158007 88504298 + 88504278 88504318 41 AGGGCACACTGCCCAGCAAACGGCGCAGGGTGGCCATGCCC AGGGCACACTGCCCAGCAAACGGCGCAGGGTGGCCATACCC < 41bp 1 0.655359901082781 1 0.825645983219147 experiment 0.689280197834439 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88504298 chr16:88504315 nonsynonymous SNV 0.001 0 38 hm5C_associated_SNPs_11927 0 0 0 0 0 exosome 1 0.500231643922317 0.348708033561706 0.999536712155366 hm5C_site_13993 DeepMRMD:0.348708033561706;iRNA_m5C:0.999536712155366 13994 chr16 88505196 88505196 1 + G A rs571622809 88505202 + 88505182 88505222 41 CAGCTTCCCCAGCCGGAGCCCTGCACCAGAGAGGCTCCCCG CAGCTTCCCCAGCCAGAGCCCTGCACCAGAGAGGCTCCCCG < 41bp 1 0.413299645202371 1 0.792471647262573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88505202 chr16:88505196 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_11928 0 0 0 0 0 exosome 1 0.500231643921092 0.415056705474854 0.999536712157815 hm5C_site_13994 DeepMRMD:0.415056705474854;iRNA_m5C:0.999536712157815 13995 chr16 88600307 88600307 1 + G A rs189881009 88600318 + 88600298 88600338 41 CGAGGAGGGGGCTGGGGGCGCGGCCACGCCCGAGGACGGCG CGAGGAGGGAGCTGGGGGCGCGGCCACGCCCGAGGACGGCG < 41bp 1 0.514927879771613 1 0.572977781295776 experiment 0.970144240456774 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88600318 chr16:88600307 synonymous SNV . 0 10 hm5C_associated_SNPs_11930 0 0 1 0 0 chromatin 1 0.500231643925088 0.854044437408448 0.999536712149823 hm5C_site_13995 DeepMRMD:0.854044437408448;iRNA_m5C:0.999536712149823 13996 chr16 88600307 88600307 1 + G A rs189881009 88600321 + 88600301 88600341 41 GGAGGGGGCTGGGGGCGCGGCCACGCCCGAGGACGGCGCGG GGAGGGAGCTGGGGGCGCGGCCACGCCCGAGGACGGCGCGG < 41bp 1 0.573087960168946 1 0.577632546424866 experiment 0.853824079662107 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88600321 chr16:88600307 synonymous SNV . 0 7 hm5C_associated_SNPs_11931 0 0 1 0 0 chromatin 1 0.500231643921092 0.844734907150268 0.999536712157815 hm5C_site_13996 DeepMRMD:0.844734907150268;iRNA_m5C:0.999536712157815 13997 chr16 88600727 88600727 1 + C A rs551773012 88600742 + 88600722 88600762 41 TCGCCCGGCCCCGCGGCCGACGGCCCCATCGACCTGAGCAA TCGCCAGGCCCCGCGGCCGACGGCCCCATCGACCTGAGCAA < 41bp 1 0.514559700691701 1 0.576987743377686 experiment 0.970880598616597 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88600742 chr16:88600727 synonymous SNV . 0 6 hm5C_associated_SNPs_11933 0 0 1 0 0 chromatin 1 0.500231650895814 0.846024513244628 0.999536698208372 hm5C_site_13997 DeepMRMD:0.846024513244628;iRNA_m5C:0.999536698208372 13998 chr16 88600729 88600729 1 + G A rs570344826 88600742 + 88600722 88600762 41 TCGCCCGGCCCCGCGGCCGACGGCCCCATCGACCTGAGCAA TCGCCCGACCCCGCGGCCGACGGCCCCATCGACCTGAGCAA < 41bp 1 0.44700765949168 1 0.59805166721344 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88600742 chr16:88600729 nonsynonymous SNV 0.002 0 8 hm5C_associated_SNPs_11934 0 0 1 0 0 chromatin 1 0.500231643921401 0.80389666557312 0.999536712157198 hm5C_site_13998 DeepMRMD:0.80389666557312;iRNA_m5C:0.999536712157198 13999 chr16 88779132 88779132 1 + C A rs2290895 88779122 + 88779102 88779142 41 GCGGCCGTGGACAGCTTCCTCCAGCAGCAGCATGTGCTGGG GCGGCCGTGGACAGCTTCCTCCAGCAGCAGAATGTGCTGGG < 41bp 1 0.500868713872103 1 0.917228579521179 experiment 0.998262572255795 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779122 chr16:88779132 nonsynonymous SNV 0.972 0 31 hm5C_associated_SNPs_11935 0 0 1 0 0 Cytosol 1 0.500231632271046 0.165542840957642 0.999536735457907 hm5C_site_13999 DeepMRMD:0.165542840957642;iRNA_m5C:0.999536735457907 14000 chr16 88780135 88780135 1 + C T rs553820121 88780149 + 88780129 88780169 41 TTTCTACAACCGCCTGTTCTCCGTTCCTTCTGTCTTCACAC TTTCTATAACCGCCTGTTCTCCGTTCCTTCTGTCTTCACAC < 41bp 1 0.168719971761003 1 0.0844592154026031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780149 chr16:88780135 synonymous SNV . 0 7 hm5C_associated_SNPs_11936 0 0 0 0 2 Cytosol 1 0.500233150922445 1 0.999533698155111 hm5C_site_14000 DeepMRMD:1;iRNA_m5C:0.999533698155111 14001 chr16 88780150 88780150 1 + C A rs2340974 88780149 + 88780129 88780169 41 TTTCTACAACCGCCTGTTCTCCGTTCCTTCTGTCTTCACAC TTTCTACAACCGCCTGTTCTCAGTTCCTTCTGTCTTCACAC < 41bp 1 0.402043172286216 1 0.216579347848892 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780149 chr16:88780150 synonymous SNV . 0 22 hm5C_associated_SNPs_11937 0 0 0 0 2 Cytosol 1 0.500231645660703 1 0.999536708678595 hm5C_site_14001 DeepMRMD:1;iRNA_m5C:0.999536708678595 14002 chr16 88781004 88781004 1 + C T rs148822873 88781016 + 88780996 88781036 41 CAGTGCCACGGCTTTTGGGGCTCAGACCTCCTCGCGTCTCT CAGTGCCATGGCTTTTGGGGCTCAGACCTCCTCGCGTCTCT < 41bp 1 0.264628080918466 1 0.238263964653015 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781016 chr16:88781004 nonsynonymous SNV 0.829 3 9 hm5C_associated_SNPs_11939 0 0 1 0 1 Cytosol 1 0.500230636969549 1 0.999538726060903 hm5C_site_14002 DeepMRMD:1;iRNA_m5C:0.999538726060903 14003 chr16 88781014 88781014 1 + G A rs141242265 88781016 + 88780996 88781036 41 CAGTGCCACGGCTTTTGGGGCTCAGACCTCCTCGCGTCTCT CAGTGCCACGGCTTTTGGAGCTCAGACCTCCTCGCGTCTCT < 41bp 1 0.322468957383747 1 0.269689202308655 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781016 chr16:88781014 synonymous SNV . 0 19 hm5C_associated_SNPs_11940 0 0 1 0 1 Cytosol 1 0.500231643920885 1 0.99953671215823 hm5C_site_14003 DeepMRMD:1;iRNA_m5C:0.99953671215823 14004 chr16 88781040 88781040 1 + A G rs8059048 88781052 + 88781032 88781072 41 TCTCTCCCAGATGCAGTCACCCATCCCCCTGACTGAGACCC TCTCTCCCGGATGCAGTCACCCATCCCCCTGACTGAGACCC < 41bp 1 0.0640851535168234 1 0.208890289068222 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781052 chr16:88781040 nonsynonymous SNV 0.063 1 9 hm5C_associated_SNPs_11941 0 0 1 0 1 Cytosol 1 0.500231643343984 1 0.999536713312032 hm5C_site_14004 DeepMRMD:1;iRNA_m5C:0.999536713312032 14005 chr16 88781062 88781062 1 + G A rs28672793 88781052 + 88781032 88781072 41 TCTCTCCCAGATGCAGTCACCCATCCCCCTGACTGAGACCC TCTCTCCCAGATGCAGTCACCCATCCCCCTAACTGAGACCC < 41bp 1 0.0537545510280736 1 0.181927859783173 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781052 chr16:88781062 synonymous SNV . 0 31 hm5C_associated_SNPs_11942 0 0 1 0 2 Cytosol 1 0.500231643940911 1 0.999536712118177 hm5C_site_14005 DeepMRMD:1;iRNA_m5C:0.999536712118177 14006 chr16 88804730 88804730 1 + C G rs150688010 88804748 - 88804728 88804768 41 CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCGGT CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCCGT < 41bp 1 0.623625910990833 1 0.344673454761505 experiment 0.752748178018334 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804748 chr16:88804730 synonymous SNV . 0 39 hm5C_associated_SNPs_11943 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921256 1 0.999536712157488 hm5C_site_14006 DeepMRMD:1;iRNA_m5C:0.999536712157488 14007 chr16 88804731 88804731 1 + G A rs539005229 88804748 - 88804728 88804768 41 CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCGGT CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGTGGT < 41bp 1 0.55506363075206 1 0.253082156181335 experiment 0.88987273849588 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804748 chr16:88804731 nonsynonymous SNV 0.000 0 38 hm5C_associated_SNPs_11944 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643914692 1 0.999536712170616 hm5C_site_14007 DeepMRMD:1;iRNA_m5C:0.999536712170616 14008 chr16 88804734 88804734 1 + A G rs7184427 88804748 - 88804728 88804768 41 CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCGGT CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGCCGCGGT < 41bp 1 0.602279729229848 1 0.558372914791107 experiment 0.795440541540305 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804748 chr16:88804734 nonsynonymous SNV 0.001 0 35 hm5C_associated_SNPs_11945 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920286 0.883254170417786 0.999536712159428 hm5C_site_14008 DeepMRMD:0.883254170417786;iRNA_m5C:0.999536712159428 14009 chr16 88804735 88804735 1 + C A rs115486714 88804748 - 88804728 88804768 41 CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCGGT CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCTTCGCGGT < 41bp 1 0.590336691490505 1 0.348843216896057 experiment 0.81932661701899 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804748 chr16:88804735 nonsynonymous SNV 0.002 1 34 hm5C_associated_SNPs_11946 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921087 1 0.999536712157826 hm5C_site_14009 DeepMRMD:1;iRNA_m5C:0.999536712157826 14010 chr16 88804765 88804765 1 + T C rs114403731 88804748 - 88804728 88804768 41 CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCGGT CCCGTCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCGGT < 41bp 1 0.605777724254906 1 0.328189313411713 experiment 0.788444551490189 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804748 chr16:88804765 nonsynonymous SNV 0.879 0 4 hm5C_associated_SNPs_11947 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644019794 1 0.999536711960411 hm5C_site_14010 DeepMRMD:1;iRNA_m5C:0.999536711960411 14011 chr16 88875050 88875050 1 + C T rs115858231 88875066 + 88875046 88875086 41 CATCCCCTCTAATCTTGGAACCTCTGAATATGGGACCTCCC CATCTCCTCTAATCTTGGAACCTCTGAATATGGGACCTCCC < 41bp 1 0.050612270278189 1 0.0690692961215973 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDT1 ENSG00000167513 UTR3 Human protein_coding chr16:88875066 chr16:88875050 . . 0 5 hm5C_associated_SNPs_11950 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14011 DeepMRMD:1;iRNA_m5C:0.999536712157815 14012 chr16 88928058 88928058 1 + C T rs143200032 88928045 + 88928025 88928065 41 GGTGCTGTGTCACTTGATGACGTGGCTGACTACCACCCAGG GGTGCTGTGTCACTTGATGACGTGGCTGACTACTACCCAGG < 41bp 1 0.698369263833296 1 0.823320984840393 experiment 0.603261472333408 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control TRAPPC2L ENSG00000205022 CDS Human protein_coding chr16:88928045 chr16:88928058 synonymous SNV . 0 34 hm5C_associated_SNPs_11951 0 0 0 0 0 Ribosome 1 0.500231643921143 0.353358030319214 0.999536712157714 hm5C_site_14012 DeepMRMD:0.353358030319214;iRNA_m5C:0.999536712157714 14013 chr16 89226631 89226631 1 + C A rs72819328 89226634 + 89226614 89226654 41 CTAACTGCAGGGTGGTCCTGCGGGCAGTACTGAGCCCGCCC CTAACTGCAGGGTGGTCATGCGGGCAGTACTGAGCCCGCCC < 41bp 1 0.663541357782501 1 0.593271732330322 experiment 0.672917284434998 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LINC00304 ENSG00000180422 ncRNA_exonic Human lincRNA chr16:89226634 chr16:89226631 . . 0 18 hm5C_associated_SNPs_11952 0 0 0 0 0 unknown 1 0.500231643921092 0.813456535339356 0.999536712157815 hm5C_site_14013 DeepMRMD:0.813456535339356;iRNA_m5C:0.999536712157815 14014 chr16 89603217 89603217 1 + C T rs144415749 89603199 + 89603179 89603219 41 CTCTTGACCAGCTACCCTCCCAGGGGACCATGAGGAAGCTC CTCTTGACCAGCTACCCTCCCAGGGGACCATGAGGAAGTTC < 41bp 1 0.696811761741601 1 0.501458942890167 experiment 0.606376476516798 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89603199 chr16:89603217 nonsynonymous SNV 0.004 1 39 hm5C_associated_SNPs_11953 1 0 1 0 1 Nucleus 1 0.500231643921092 0.997082114219666 0.999536712157815 hm5C_site_14014 DeepMRMD:0.997082114219666;iRNA_m5C:0.999536712157815 not specified not specified 14015 chr16 89603536 89603536 1 + G A rs182441221 89603526 + 89603506 89603546 41 GAGCCACAGCTGTGCATGCTCAGCCCTGCCGAGGTCCCAGG GAGCCACAGCTGTGCATGCTCAGCCCTGCCAAGGTCCCAGG < 41bp 1 0.399567485489078 1 0.244093060493469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPG7 ENSG00000197912 UTR3 Human protein_coding chr16:89603526 chr16:89603536 . . 0 31 hm5C_associated_SNPs_11954 0 0 1 0 0 Nucleus 1 0.500231643949065 1 0.999536712101869 hm5C_site_14015 DeepMRMD:1;iRNA_m5C:0.999536712101869 14016 chr16 89620302 89620302 1 + G A rs79756036 89620301 + 89620281 89620321 41 GCCCATCTCCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA GCCCATCTCCTTCCCTGAGGCACAGGAGGGCCTCATGGGCA < 41bp 1 0.612781914140148 1 0.401648491621017 experiment 0.774436171719703 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89620301 chr16:89620302 synonymous SNV . 0 22 hm5C_associated_SNPs_11955 3 0 1 0 1 Nucleus 1 0.500231643920407 1 0.999536712159186 hm5C_site_14016 DeepMRMD:1;iRNA_m5C:0.999536712159186 not specified not specified 14017 chr16 89627076 89627076 1 + T C rs375575770 89627094 + 89627074 89627114 41 ATTGCGGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCG ATCGCGGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCG < 41bp 1 0.365780238246345 1 0.240009754896164 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627094 chr16:89627076 . . 0 3 hm5C_associated_SNPs_11956 0 0 1 0 0 Cytosol 1 0.500231643921149 1 0.999536712157702 hm5C_site_14017 DeepMRMD:1;iRNA_m5C:0.999536712157702 14018 chr16 89627079 89627079 1 + G A rs558653840 89627094 + 89627074 89627114 41 ATTGCGGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCG ATTGCAGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCG < 41bp 1 0.408527330403607 1 0.361914455890656 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627094 chr16:89627079 . . 0 6 hm5C_associated_SNPs_11957 0 0 1 0 0 Cytosol 1 0.500231660436979 1 0.999536679126042 hm5C_site_14018 DeepMRMD:1;iRNA_m5C:0.999536679126042 14019 chr16 89627079 89627079 1 + G A rs558653840 89627099 + 89627079 89627119 41 GGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGA AGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGA < 41bp 1 0.486250170866695 1 0.426066130399704 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627099 chr16:89627079 . . 0 1 hm5C_associated_SNPs_11958 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_14019 DeepMRMD:1;iRNA_m5C:0.999536712157815 14020 chr16 89627081 89627081 1 + G A rs576742925 89627094 + 89627074 89627114 41 ATTGCGGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCG ATTGCGGAGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCG < 41bp 1 0.379773794819178 1 0.226849555969238 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627094 chr16:89627081 . . 0 8 hm5C_associated_SNPs_11959 0 0 1 0 0 Cytosol 1 0.500231643922161 1 0.999536712155678 hm5C_site_14020 DeepMRMD:1;iRNA_m5C:0.999536712155678 14021 chr16 89627081 89627081 1 + G A rs576742925 89627099 + 89627079 89627119 41 GGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGA GGAGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGA < 41bp 1 0.501189950648343 1 0.424533188343048 experiment 0.997620098703315 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627099 chr16:89627081 . . 0 3 hm5C_associated_SNPs_11960 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14021 DeepMRMD:1;iRNA_m5C:0.999536712157815 14022 chr16 89627082 89627082 1 + G A rs370164340 89627094 + 89627074 89627114 41 ATTGCGGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCG ATTGCGGGACCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCG < 41bp 1 0.354899252860168 1 0.336786717176437 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627094 chr16:89627082 . . 0 9 hm5C_associated_SNPs_11961 0 0 1 0 0 Cytosol 1 0.500231643921465 1 0.99953671215707 hm5C_site_14022 DeepMRMD:1;iRNA_m5C:0.99953671215707 14023 chr16 89627082 89627082 1 + G A rs370164340 89627099 + 89627079 89627119 41 GGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGA GGGACCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGA < 41bp 1 0.497138077558192 1 0.455664038658142 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627099 chr16:89627082 . . 0 4 hm5C_associated_SNPs_11962 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_14023 DeepMRMD:1;iRNA_m5C:0.999536712157814 14024 chr16 89627082 89627082 1 + G A rs370164340 89627102 + 89627082 89627122 41 GCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGAGGT ACCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGAGGT < 41bp 1 0.104397893176609 1 0.121343821287155 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627102 chr16:89627082 . . 0 1 hm5C_associated_SNPs_11963 0 0 1 0 0 Cytosol 1 0.500231643191504 1 0.999536713616992 hm5C_site_14024 DeepMRMD:1;iRNA_m5C:0.999536713616992 14025 chr16 89627084 89627084 1 + C T rs144161178 89627094 + 89627074 89627114 41 ATTGCGGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCG ATTGCGGGGCTGCTTCCTTTCCGCTCGGCTGTTTTCCTGCG < 41bp 1 0.402282600103786 1 0.399606645107269 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627094 chr16:89627084 . . 0 11 hm5C_associated_SNPs_11964 0 0 1 0 0 Cytosol 1 0.500231643920379 1 0.999536712159242 hm5C_site_14025 DeepMRMD:1;iRNA_m5C:0.999536712159242 14026 chr16 89627084 89627084 1 + C T rs144161178 89627099 + 89627079 89627119 41 GGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGA GGGGCTGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGA < 41bp 1 0.506375728960547 1 0.501935422420502 experiment 0.987248542078907 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627099 chr16:89627084 . . 0 6 hm5C_associated_SNPs_11965 0 0 1 0 0 Cytosol 1 0.500231643921092 0.996129155158996 0.999536712157815 hm5C_site_14026 DeepMRMD:0.996129155158996;iRNA_m5C:0.999536712157815 14027 chr16 89627084 89627084 1 + C T rs144161178 89627102 + 89627082 89627122 41 GCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGAGGT GCTGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGAGGT < 41bp 1 0.137722461640353 1 0.133188813924789 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627102 chr16:89627084 . . 0 3 hm5C_associated_SNPs_11966 0 0 1 0 0 Cytosol 1 0.500231633643642 1 0.999536732712716 hm5C_site_14027 DeepMRMD:1;iRNA_m5C:0.999536732712716 14028 chr16 89627097 89627097 1 + C T rs542001153 89627094 + 89627074 89627114 41 ATTGCGGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCG ATTGCGGGGCCGCTTCCTTTCCGTTCGGCTGTTTTCCTGCG < 41bp 1 0.242764793340739 1 0.0768342912197113 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627094 chr16:89627097 . . 0 24 hm5C_associated_SNPs_11967 0 0 1 0 0 Cytosol 1 0.500231643924017 1 0.999536712151967 hm5C_site_14028 DeepMRMD:1;iRNA_m5C:0.999536712151967 14029 chr16 89627097 89627097 1 + C T rs542001153 89627099 + 89627079 89627119 41 GGGGCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGA GGGGCCGCTTCCTTTCCGTTCGGCTGTTTTCCTGCGCAGGA < 41bp 1 0.500088321463432 1 0.441199600696564 experiment 0.999823357073137 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627099 chr16:89627097 . . 0 19 hm5C_associated_SNPs_11968 0 0 1 0 0 Cytosol 1 0.500231643921176 1 0.999536712157649 hm5C_site_14029 DeepMRMD:1;iRNA_m5C:0.999536712157649 14030 chr16 89627097 89627097 1 + C T rs542001153 89627102 + 89627082 89627122 41 GCCGCTTCCTTTCCGCTCGGCTGTTTTCCTGCGCAGGAGGT GCCGCTTCCTTTCCGTTCGGCTGTTTTCCTGCGCAGGAGGT < 41bp 1 0.122890800792956 1 0.121613651514053 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 UTR5 Human protein_coding chr16:89627102 chr16:89627097 . . 0 16 hm5C_associated_SNPs_11969 0 0 1 0 0 Cytosol 1 0.500231643911137 1 0.999536712177727 hm5C_site_14030 DeepMRMD:1;iRNA_m5C:0.999536712177727 14031 chr16 89627460 89627460 1 + T G rs2280370 89627445 + 89627425 89627465 41 CGGCGCGTGGCCACGTGGTTCAACCAGCCGGCCCGTAAGAT CGGCGCGTGGCCACGTGGTTCAACCAGCCGGCCCGGAAGAT < 41bp 1 0.349510583177601 1 0.0785979330539703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627445 chr16:89627460 synonymous SNV . 0 36 hm5C_associated_SNPs_11971 0 0 1 0 1 Cytosol 1 0.500231643921048 1 0.999536712157904 hm5C_site_14031 DeepMRMD:1;iRNA_m5C:0.999536712157904 14032 chr16 89627460 89627460 1 + T G rs2280370 89627456 + 89627436 89627476 41 CACGTGGTTCAACCAGCCGGCCCGTAAGATCCGCAGGTGAG CACGTGGTTCAACCAGCCGGCCCGGAAGATCCGCAGGTGAG < 41bp 1 0.348739288579684 1 0.188221603631973 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627456 chr16:89627460 synonymous SNV . 0 25 hm5C_associated_SNPs_11972 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14032 DeepMRMD:1;iRNA_m5C:0.999536712157815 14033 chr16 89627671 89627671 1 + C G rs174035 89627672 + 89627652 89627692 41 CCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGTCCC CCAAGGCGCGCCGCATCGCGCCGCGCCCCGCGTCGGGTCCC < 41bp 1 0.636704884003184 1 0.410935938358307 experiment 0.726590231993631 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627672 chr16:89627671 synonymous SNV . 0 20 hm5C_associated_SNPs_11973 0 0 1 0 2 Cytosol 1 0.500231798523485 1 0.999536402953029 hm5C_site_14033 DeepMRMD:1;iRNA_m5C:0.999536402953029 14034 chr16 89627671 89627671 1 + C G rs174035 89627679 + 89627659 89627699 41 GCGCCGCATCGCCCCGCGCCCCGCGTCGGGTCCCATCCGGC GCGCCGCATCGCGCCGCGCCCCGCGTCGGGTCCCATCCGGC < 41bp 1 0.660243051344678 1 0.270209729671478 experiment 0.679513897310644 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627679 chr16:89627671 synonymous SNV . 0 13 hm5C_associated_SNPs_11974 0 0 1 0 2 Cytosol 1 0.500232870511621 1 0.999534258976759 hm5C_site_14034 DeepMRMD:1;iRNA_m5C:0.999534258976759 14035 chr16 89627671 89627671 1 + C G rs174035 89627691 + 89627671 89627711 41 CCCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCT GCCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCT < 41bp 1 0.092350387161344 1 0.0990476608276367 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627691 chr16:89627671 synonymous SNV . 0 1 hm5C_associated_SNPs_11975 0 0 1 0 2 Cytosol 1 0.500231754868808 1 0.999536490262384 hm5C_site_14035 DeepMRMD:1;iRNA_m5C:0.999536490262384 14036 chr16 89627689 89627689 1 + T G rs564290531 89627672 + 89627652 89627692 41 CCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGTCCC CCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGGCCC < 41bp 1 0.68555696688485 1 0.323637783527374 experiment 0.6288860662303 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627672 chr16:89627689 synonymous SNV . 0 38 hm5C_associated_SNPs_11976 0 0 1 0 2 Cytosol 1 0.500231648122175 1 0.999536703755651 hm5C_site_14036 DeepMRMD:1;iRNA_m5C:0.999536703755651 14037 chr16 89627689 89627689 1 + T G rs564290531 89627679 + 89627659 89627699 41 GCGCCGCATCGCCCCGCGCCCCGCGTCGGGTCCCATCCGGC GCGCCGCATCGCCCCGCGCCCCGCGTCGGGGCCCATCCGGC < 41bp 1 0.654700318435396 1 0.306451112031937 experiment 0.690599363129207 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627679 chr16:89627689 synonymous SNV . 0 31 hm5C_associated_SNPs_11977 0 0 1 0 2 Cytosol 1 0.500231653477094 1 0.999536693045811 hm5C_site_14037 DeepMRMD:1;iRNA_m5C:0.999536693045811 14038 chr16 89627689 89627689 1 + T G rs564290531 89627691 + 89627671 89627711 41 CCCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCT CCCGCGCCCCGCGTCGGGGCCCATCCGGCCCATCGTGCGCT < 41bp 1 0.0652525017561101 1 0.0685529708862305 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627691 chr16:89627689 synonymous SNV . 0 19 hm5C_associated_SNPs_11978 0 0 1 0 2 Cytosol 1 0.500231643908151 1 0.999536712183698 hm5C_site_14038 DeepMRMD:1;iRNA_m5C:0.999536712183698 14039 chr16 89627689 89627689 1 + T G rs564290531 89627692 + 89627672 89627712 41 CCGCGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCTG CCGCGCCCCGCGTCGGGGCCCATCCGGCCCATCGTGCGCTG < 41bp 1 0.432832975362844 1 0.0840460360050201 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627692 chr16:89627689 synonymous SNV . 0 18 hm5C_associated_SNPs_11979 0 0 1 0 2 Cytosol 1 0.500231643921106 1 0.999536712157788 hm5C_site_14039 DeepMRMD:1;iRNA_m5C:0.999536712157788 14040 chr16 89627689 89627689 1 + T G rs564290531 89627695 + 89627675 89627715 41 CGCCCCGCGTCGGGTCCCATCCGGCCCATCGTGCGCTGCCC CGCCCCGCGTCGGGGCCCATCCGGCCCATCGTGCGCTGCCC < 41bp 1 0.628323078678451 1 0.884824752807617 experiment 0.743353842643098 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627695 chr16:89627689 synonymous SNV . 0 15 hm5C_associated_SNPs_11980 0 0 1 0 2 Cytosol 1 0.500231643888816 0.230350494384766 0.999536712222367 hm5C_site_14040 DeepMRMD:0.230350494384766;iRNA_m5C:0.999536712222367 14041 chr16 89627689 89627689 1 + T G rs564290531 89627699 + 89627679 89627719 41 CCGCGTCGGGTCCCATCCGGCCCATCGTGCGCTGCCCCACG CCGCGTCGGGGCCCATCCGGCCCATCGTGCGCTGCCCCACG < 41bp 1 0.304416094435122 1 0.0427840352058411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627699 chr16:89627689 synonymous SNV . 0 11 hm5C_associated_SNPs_11981 0 0 1 0 2 Cytosol 1 0.500237667244605 1 0.99952466551079 hm5C_site_14041 DeepMRMD:1;iRNA_m5C:0.99952466551079 14042 chr16 89627863 89627863 1 + C T rs575878848 89627848 + 89627828 89627868 41 TGGCCTCAGTCGCGTGATGACATTCTCCGGAATCGCTGTAC TGGCCTCAGTCGCGTGATGACATTCTCCGGAATCGTTGTAC < 41bp 1 0.0668107700752396 1 0.0626578330993652 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627848 chr16:89627863 . . 0 36 hm5C_associated_SNPs_11982 0 0 1 0 1 unknown 1 0.500234139111926 1 0.999531721776149 hm5C_site_14042 DeepMRMD:1;iRNA_m5C:0.999531721776149 14043 chr16 89627863 89627863 1 + C T rs575878848 89627852 + 89627832 89627872 41 CTCAGTCGCGTGATGACATTCTCCGGAATCGCTGTACGGCC CTCAGTCGCGTGATGACATTCTCCGGAATCGTTGTACGGCC < 41bp 1 0.575613459800863 1 0.882109761238098 experiment 0.848773080398274 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627852 chr16:89627863 . . 0 32 hm5C_associated_SNPs_11983 0 0 1 0 1 unknown 1 0.500231618932961 0.235780477523804 0.999536762134077 hm5C_site_14043 DeepMRMD:0.235780477523804;iRNA_m5C:0.999536762134077 14044 chr16 89627863 89627863 1 + C T rs575878848 89627854 + 89627834 89627874 41 CAGTCGCGTGATGACATTCTCCGGAATCGCTGTACGGCCTT CAGTCGCGTGATGACATTCTCCGGAATCGTTGTACGGCCTT < 41bp 1 0.656365889139631 1 0.90520304441452 experiment 0.687268221720739 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627854 chr16:89627863 . . 0 30 hm5C_associated_SNPs_11984 0 0 1 0 1 unknown 1 0.500231643920996 0.18959391117096 0.999536712158008 hm5C_site_14044 DeepMRMD:0.18959391117096;iRNA_m5C:0.999536712158008 14045 chr16 89627863 89627863 1 + C T rs575878848 89627855 + 89627835 89627875 41 AGTCGCGTGATGACATTCTCCGGAATCGCTGTACGGCCTTG AGTCGCGTGATGACATTCTCCGGAATCGTTGTACGGCCTTG < 41bp 1 0.675556097949596 1 0.833850085735321 experiment 0.648887804100809 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627855 chr16:89627863 . . 0 29 hm5C_associated_SNPs_11985 0 0 1 0 1 unknown 1 0.500223914795996 0.332299828529358 0.999552170408007 hm5C_site_14045 DeepMRMD:0.332299828529358;iRNA_m5C:0.999552170408007 14046 chr16 89627863 89627863 1 + C T rs575878848 89627861 + 89627841 89627881 41 GTGATGACATTCTCCGGAATCGCTGTACGGCCTTGATGAAA GTGATGACATTCTCCGGAATCGTTGTACGGCCTTGATGAAA < 41bp 1 0.182197597538502 1 0.390704482793808 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627861 chr16:89627863 . . 0 23 hm5C_associated_SNPs_11986 0 0 1 0 1 unknown 1 0.500232067923735 1 0.99953586415253 hm5C_site_14046 DeepMRMD:1;iRNA_m5C:0.99953586415253 14047 chr16 89627863 89627863 1 + C T rs575878848 89627868 + 89627848 89627888 41 CATTCTCCGGAATCGCTGTACGGCCTTGATGAAAGCACATT CATTCTCCGGAATCGTTGTACGGCCTTGATGAAAGCACATT < 41bp 1 0.195678273162895 1 0.162464410066605 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627868 chr16:89627863 . . 0 16 hm5C_associated_SNPs_11987 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14047 DeepMRMD:1;iRNA_m5C:0.999536712157815 14048 chr16 89627863 89627863 1 + C T rs575878848 89627871 + 89627851 89627891 41 TCTCCGGAATCGCTGTACGGCCTTGATGAAAGCACATTTGA TCTCCGGAATCGTTGTACGGCCTTGATGAAAGCACATTTGA < 41bp 1 0.0421518732039598 1 0.031143993139267 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627871 chr16:89627863 . . 0 13 hm5C_associated_SNPs_11988 0 0 1 0 1 unknown 1 0.500231643921142 1 0.999536712157716 hm5C_site_14048 DeepMRMD:1;iRNA_m5C:0.999536712157716 14049 chr16 89627863 89627863 1 + C T rs575878848 89627872 + 89627852 89627892 41 CTCCGGAATCGCTGTACGGCCTTGATGAAAGCACATTTGAA CTCCGGAATCGTTGTACGGCCTTGATGAAAGCACATTTGAA < 41bp 1 0.25697608277544 1 0.166038542985916 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627872 chr16:89627863 . . 0 12 hm5C_associated_SNPs_11989 0 0 1 0 1 unknown 1 0.500231643921162 1 0.999536712157675 hm5C_site_14049 DeepMRMD:1;iRNA_m5C:0.999536712157675 14050 chr16 89627863 89627863 1 + C T rs575878848 89627883 + 89627863 89627903 41 CTGTACGGCCTTGATGAAAGCACATTTGAACCCTTTTCCAT TTGTACGGCCTTGATGAAAGCACATTTGAACCCTTTTCCAT < 41bp 1 0.294599035037289 1 0.052655965089798 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627883 chr16:89627863 . . 0 1 hm5C_associated_SNPs_11990 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14050 DeepMRMD:1;iRNA_m5C:0.999536712157815 14051 chr16 89627902 89627902 1 + A T rs375564801 89627883 + 89627863 89627903 41 CTGTACGGCCTTGATGAAAGCACATTTGAACCCTTTTCCAT CTGTACGGCCTTGATGAAAGCACATTTGAACCCTTTTCCTT < 41bp 1 0.286975447025326 1 0.0751442909240723 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627883 chr16:89627902 . . 0 40 hm5C_associated_SNPs_11991 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14051 DeepMRMD:1;iRNA_m5C:0.999536712157815 14052 chr16 89627902 89627902 1 + A T rs375564801 89627885 + 89627865 89627905 41 GTACGGCCTTGATGAAAGCACATTTGAACCCTTTTCCATCT GTACGGCCTTGATGAAAGCACATTTGAACCCTTTTCCTTCT < 41bp 1 0.0860990423433169 1 0.0256139934062958 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627885 chr16:89627902 . . 0 38 hm5C_associated_SNPs_11992 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14052 DeepMRMD:1;iRNA_m5C:0.999536712157815 14053 chr16 89627902 89627902 1 + A T rs375564801 89627893 + 89627873 89627913 41 TTGATGAAAGCACATTTGAACCCTTTTCCATCTGATTGCTG TTGATGAAAGCACATTTGAACCCTTTTCCTTCTGATTGCTG < 41bp 1 0.0360342677391505 1 0.0318958461284637 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627893 chr16:89627902 . . 0 30 hm5C_associated_SNPs_11993 0 0 1 0 0 unknown 1 0.500231643921192 1 0.999536712157617 hm5C_site_14053 DeepMRMD:1;iRNA_m5C:0.999536712157617 14054 chr16 89627902 89627902 1 + A T rs375564801 89627894 + 89627874 89627914 41 TGATGAAAGCACATTTGAACCCTTTTCCATCTGATTGCTGA TGATGAAAGCACATTTGAACCCTTTTCCTTCTGATTGCTGA < 41bp 1 0.01776269112932 1 0.0264248847961426 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627894 chr16:89627902 . . 0 29 hm5C_associated_SNPs_11994 0 0 1 0 0 unknown 1 0.500231643209527 1 0.999536713580946 hm5C_site_14054 DeepMRMD:1;iRNA_m5C:0.999536713580946 14055 chr16 89627902 89627902 1 + A T rs375564801 89627895 + 89627875 89627915 41 GATGAAAGCACATTTGAACCCTTTTCCATCTGATTGCTGAG GATGAAAGCACATTTGAACCCTTTTCCTTCTGATTGCTGAG < 41bp 1 0.0403520209584571 1 0.0476866066455841 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627895 chr16:89627902 . . 0 28 hm5C_associated_SNPs_11995 0 0 1 0 0 unknown 1 0.500231643921335 1 0.999536712157331 hm5C_site_14055 DeepMRMD:1;iRNA_m5C:0.999536712157331 14056 chr16 89627902 89627902 1 + A T rs375564801 89627900 + 89627880 89627920 41 AAGCACATTTGAACCCTTTTCCATCTGATTGCTGAGGCTTT AAGCACATTTGAACCCTTTTCCTTCTGATTGCTGAGGCTTT < 41bp 1 0.0125446470487325 1 0.109165906906128 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627900 chr16:89627902 . . 0 23 hm5C_associated_SNPs_11996 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14056 DeepMRMD:1;iRNA_m5C:0.999536712157815 14057 chr16 89627902 89627902 1 + A T rs375564801 89627901 + 89627881 89627921 41 AGCACATTTGAACCCTTTTCCATCTGATTGCTGAGGCTTTT AGCACATTTGAACCCTTTTCCTTCTGATTGCTGAGGCTTTT < 41bp 1 0.0947709738667654 1 0.232279121875763 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627901 chr16:89627902 . . 0 22 hm5C_associated_SNPs_11997 0 0 1 0 0 unknown 1 0.500231643893 1 0.999536712214 hm5C_site_14057 DeepMRMD:1;iRNA_m5C:0.999536712214 14058 chr16 89627902 89627902 1 + A T rs375564801 89627904 + 89627884 89627924 41 ACATTTGAACCCTTTTCCATCTGATTGCTGAGGCTTTTCAT ACATTTGAACCCTTTTCCTTCTGATTGCTGAGGCTTTTCAT < 41bp 1 0.20376529613683 1 0.0295722186565399 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD68 ENSG00000200084 ncRNA_exonic Human snoRNA chr16:89627904 chr16:89627902 . . 0 19 hm5C_associated_SNPs_11998 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14058 DeepMRMD:1;iRNA_m5C:0.999536712157815 14059 chr16 89629736 89629736 1 + C G rs3211567 89629746 + 89629726 89629766 41 TTTAAAGAGGCAAGGTTGGGCTGGTGCTCACAGCTGTAATC TTTAAAGAGGGAAGGTTGGGCTGGTGCTCACAGCTGTAATC < 41bp 1 0.470093760554081 1 0.265472382307053 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89629746 chr16:89629736 . . 0 11 hm5C_associated_SNPs_11999 0 0 1 0 0 Cytosol 1 0.500231643897567 1 0.999536712204867 hm5C_site_14059 DeepMRMD:1;iRNA_m5C:0.999536712204867 14060 chr16 89629743 89629743 1 + G A rs528376805 89629746 + 89629726 89629766 41 TTTAAAGAGGCAAGGTTGGGCTGGTGCTCACAGCTGTAATC TTTAAAGAGGCAAGGTTAGGCTGGTGCTCACAGCTGTAATC < 41bp 1 0.54208427315111 1 0.266640603542328 experiment 0.915831453697779 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89629746 chr16:89629743 . . 0 18 hm5C_associated_SNPs_12000 0 0 1 0 0 Cytosol 1 0.500231643918981 1 0.999536712162037 hm5C_site_14060 DeepMRMD:1;iRNA_m5C:0.999536712162037 14061 chr16 89629744 89629744 1 + G A rs546920024 89629746 + 89629726 89629766 41 TTTAAAGAGGCAAGGTTGGGCTGGTGCTCACAGCTGTAATC TTTAAAGAGGCAAGGTTGAGCTGGTGCTCACAGCTGTAATC < 41bp 1 0.516218974886109 1 0.444865018129349 experiment 0.967562050227783 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89629746 chr16:89629744 . . 0 19 hm5C_associated_SNPs_12001 0 0 1 0 0 Cytosol 1 0.500231646310692 1 0.999536707378615 hm5C_site_14061 DeepMRMD:1;iRNA_m5C:0.999536707378615 14062 chr16 89629747 89629747 1 + T A rs571344480 89629746 + 89629726 89629766 41 TTTAAAGAGGCAAGGTTGGGCTGGTGCTCACAGCTGTAATC TTTAAAGAGGCAAGGTTGGGCAGGTGCTCACAGCTGTAATC < 41bp 1 0.523116837051738 1 0.752203166484833 experiment 0.953766325896524 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89629746 chr16:89629747 . . 0 22 hm5C_associated_SNPs_12002 0 0 1 0 0 Cytosol 1 0.500231643920985 0.495593667030334 0.99953671215803 hm5C_site_14062 DeepMRMD:0.495593667030334;iRNA_m5C:0.99953671215803 14063 chr16 89630613 89630613 1 + C T rs546979554 89630597 + 89630577 89630617 41 CTACATGCCTCTGCCGGGTGCCGGTATTGAGGCACCCAGGG CTACATGCCTCTGCCGGGTGCCGGTATTGAGGCACCTAGGG < 41bp 1 0.3723128888635 1 0.285634934902191 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89630597 chr16:89630613 . . 0 37 hm5C_associated_SNPs_12003 0 0 1 0 0 Cytosol 1 0.500231446909222 1 0.999537106181555 hm5C_site_14063 DeepMRMD:1;iRNA_m5C:0.999537106181555 14064 chr16 89630613 89630613 1 + C T rs546979554 89630598 + 89630578 89630618 41 TACATGCCTCTGCCGGGTGCCGGTATTGAGGCACCCAGGGA TACATGCCTCTGCCGGGTGCCGGTATTGAGGCACCTAGGGA < 41bp 1 0.38068078044064 1 0.701440095901489 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89630598 chr16:89630613 . . 0 36 hm5C_associated_SNPs_12004 0 0 1 0 0 Cytosol 1 0.500231643921132 0.597119808197022 0.999536712157735 hm5C_site_14064 DeepMRMD:0.597119808197022;iRNA_m5C:0.999536712157735 14065 chr16 89630613 89630613 1 + C T rs546979554 89630609 + 89630589 89630629 41 GCCGGGTGCCGGTATTGAGGCACCCAGGGAGCTGTTACTGG GCCGGGTGCCGGTATTGAGGCACCTAGGGAGCTGTTACTGG < 41bp 1 0.31211861063303 1 0.105868369340897 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89630609 chr16:89630613 . . 0 25 hm5C_associated_SNPs_12005 0 0 1 0 0 Cytosol 1 0.50023164392094 1 0.99953671215812 hm5C_site_14065 DeepMRMD:1;iRNA_m5C:0.99953671215812 14066 chr16 89630613 89630613 1 + C T rs546979554 89630611 + 89630591 89630631 41 CGGGTGCCGGTATTGAGGCACCCAGGGAGCTGTTACTGGCG CGGGTGCCGGTATTGAGGCACCTAGGGAGCTGTTACTGGCG < 41bp 1 0.101744233373059 1 0.124186277389526 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89630611 chr16:89630613 . . 0 23 hm5C_associated_SNPs_12006 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14066 DeepMRMD:1;iRNA_m5C:0.999536712157815 14067 chr16 89630621 89630621 1 + T G rs114683888 89630609 + 89630589 89630629 41 GCCGGGTGCCGGTATTGAGGCACCCAGGGAGCTGTTACTGG GCCGGGTGCCGGTATTGAGGCACCCAGGGAGCGGTTACTGG < 41bp 1 0.222797476702117 1 0.0811923146247864 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89630609 chr16:89630621 . . 0 33 hm5C_associated_SNPs_12007 0 0 1 0 0 Cytosol 1 0.500231643903133 1 0.999536712193734 hm5C_site_14067 DeepMRMD:1;iRNA_m5C:0.999536712193734 14068 chr16 89630621 89630621 1 + T G rs114683888 89630611 + 89630591 89630631 41 CGGGTGCCGGTATTGAGGCACCCAGGGAGCTGTTACTGGCG CGGGTGCCGGTATTGAGGCACCCAGGGAGCGGTTACTGGCG < 41bp 1 0.256515201604717 1 0.117305278778076 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89630611 chr16:89630621 . . 0 31 hm5C_associated_SNPs_12008 0 0 1 0 0 Cytosol 1 0.500231643200187 1 0.999536713599626 hm5C_site_14068 DeepMRMD:1;iRNA_m5C:0.999536713599626 14069 chr16 89630621 89630621 1 + T G rs114683888 89630612 + 89630592 89630632 41 GGGTGCCGGTATTGAGGCACCCAGGGAGCTGTTACTGGCGT GGGTGCCGGTATTGAGGCACCCAGGGAGCGGTTACTGGCGT < 41bp 1 0.679996918459533 1 0.710926532745361 experiment 0.640006163080934 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89630612 chr16:89630621 . . 0 30 hm5C_associated_SNPs_12009 0 0 1 0 0 Cytosol 1 0.500231655005459 0.578146934509278 0.999536689989083 hm5C_site_14069 DeepMRMD:0.578146934509278;iRNA_m5C:0.999536689989083 14070 chr16 89630630 89630630 1 + C T rs12932337 89630611 + 89630591 89630631 41 CGGGTGCCGGTATTGAGGCACCCAGGGAGCTGTTACTGGCG CGGGTGCCGGTATTGAGGCACCCAGGGAGCTGTTACTGGTG < 41bp 1 0.217773709057802 1 0.123187214136124 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89630611 chr16:89630630 . . 0 40 hm5C_associated_SNPs_12010 0 0 1 0 0 Cytosol 1 0.500231594593084 1 0.999536810813832 hm5C_site_14070 DeepMRMD:1;iRNA_m5C:0.999536810813832 14071 chr16 89630630 89630630 1 + C T rs12932337 89630612 + 89630592 89630632 41 GGGTGCCGGTATTGAGGCACCCAGGGAGCTGTTACTGGCGT GGGTGCCGGTATTGAGGCACCCAGGGAGCTGTTACTGGTGT < 41bp 1 0.626316095624783 1 0.758558034896851 experiment 0.747367808750433 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13 ENSG00000167526 UTR3 Human protein_coding chr16:89630612 chr16:89630630 . . 0 39 hm5C_associated_SNPs_12011 0 0 1 0 0 Cytosol 1 0.500224175325095 0.482883930206298 0.99955164934981 hm5C_site_14071 DeepMRMD:0.482883930206298;iRNA_m5C:0.99955164934981 14072 chr16 89642203 89642203 1 + G A rs183412981 89642202 + 89642182 89642222 41 GGCAGGCGTTCAGGGAAGCGCGGCCACGCCTGGGCCGGCCA GGCAGGCGTTCAGGGAAGCGCAGCCACGCCTGGGCCGGCCA < 41bp 1 0.501229984622683 1 0.513602674007416 experiment 0.997540030754633 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPNE7 ENSG00000178773 UTR5 Human protein_coding chr16:89642202 chr16:89642203 . . 0 22 hm5C_associated_SNPs_12012 0 0 0 0 0 Nucleus 1 0.500231643921092 0.972794651985168 0.999536712157815 hm5C_site_14072 DeepMRMD:0.972794651985168;iRNA_m5C:0.999536712157815 14073 chr16 89651199 89651199 1 + C A rs114838488 89651185 + 89651165 89651205 41 CTTGTGCCTCTCCCCAGGACCTCTTCAGCAAGTCCGACCCC CTTGTGCCTCTCCCCAGGACCTCTTCAGCAAGTCAGACCCC < 41bp 1 0.132064898207921 1 0.105902343988419 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89651185 chr16:89651199 synonymous SNV . 0 35 hm5C_associated_SNPs_12013 0 0 1 0 2 Nucleus 1 0.500231643921072 1 0.999536712157856 hm5C_site_14073 DeepMRMD:1;iRNA_m5C:0.999536712157856 14074 chr16 89663190 89663190 1 + C T rs3751681 89663188 + 89663168 89663208 41 TGGGATCCTGCTGGCTTGGGCCCGGCTCTGGGGCCCCCAAG TGGGATCCTGCTGGCTTGGGCCTGGCTCTGGGGCCCCCAAG < 41bp 1 0.312467903067146 1 0.283032566308975 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CPNE7 ENSG00000178773 UTR3 Human protein_coding chr16:89663188 chr16:89663190 . . 0 23 hm5C_associated_SNPs_12014 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14074 DeepMRMD:1;iRNA_m5C:0.999536712157815 14075 chr16 89727606 89727606 1 + G A rs188486606 89727624 + 89727604 89727644 41 CTGTTAGGATATTGATGTGGCTTGGCTGTGTCCTCACCCAA CTATTAGGATATTGATGTGGCTTGGCTGTGTCCTCACCCAA < 41bp 1 0.348106478680774 1 0.0798616409301758 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA33 ENSG00000167523 UTR3 Human protein_coding chr16:89727624 chr16:89727606 . . 0 3 hm5C_associated_SNPs_12015 0 0 1 1 0 Ribosome 1 0.500231643872408 1 0.999536712255185 hm5C_site_14075 DeepMRMD:1;iRNA_m5C:0.999536712255185 14076 chr16 89759822 89759822 1 + C G rs554811580 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCGGCCTGGCGCGGGCCTATGGTGTCCCAGTA < 41bp 1 0.611623868512049 1 0.896915435791016 experiment 0.776752262975903 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759822 synonymous SNV . 0 20 hm5C_associated_SNPs_12016 0 0 1 0 2 chromatin 1 0.500231643921092 0.206169128417968 0.999536712157815 hm5C_site_14076 DeepMRMD:0.206169128417968;iRNA_m5C:0.999536712157815 14077 chr16 89784362 89784362 1 + T G rs2377050 89784344 + 89784324 89784364 41 TCCAGTGGCTCCCCCGACCTCTGTGCTCCCACGTCCAGTGG TCCAGTGGCTCCCCCGACCTCTGTGCTCCCACGTCCAGGGG < 41bp 1 0.630872468350973 1 0.251634567975998 experiment 0.738255063298054 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS9D1-AS1 ENSG00000261373 ncRNA_exonic Human antisense chr16:89784344 chr16:89784362 . . 0 39 hm5C_associated_SNPs_12017 0 0 0 0 0 unknown 1 0.500231643925268 1 0.999536712149463 hm5C_site_14077 DeepMRMD:1;iRNA_m5C:0.999536712149463 14078 chr16 89786945 89786945 1 + C A rs565463571 89786937 + 89786917 89786957 41 GAGCCCAGGCTGTGATGCACCGGCTCAGCGAGCGGAGTGGA GAGCCCAGGCTGTGATGCACCGGCTCAGAGAGCGGAGTGGA < 41bp 1 0.449063702647892 1 0.0655342042446136 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS9D1 ENSG00000158805 UTR5 Human protein_coding chr16:89786937 chr16:89786945 . . 0 29 hm5C_associated_SNPs_12018 0 0 1 0 1 Cytosol 1 0.500231633611404 1 0.999536732777191 hm5C_site_14078 DeepMRMD:1;iRNA_m5C:0.999536732777191 14079 chr16 89925689 89925689 1 + C G rs532096505 89925700 + 89925680 89925720 41 CACCCACCCCCCAGGAGGGACGGAGCCACCACGGCCCCGAG CACCCACCCGCCAGGAGGGACGGAGCCACCACGGCCCCGAG < 41bp 1 0.517983265693339 1 0.742708027362823 experiment 0.964033468613322 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89925700 chr16:89925689 synonymous SNV . 0 10 hm5C_associated_SNPs_12019 0 0 1 0 0 Cytosol 1 0.500231643921093 0.514583945274354 0.999536712157815 hm5C_site_14079 DeepMRMD:0.514583945274354;iRNA_m5C:0.999536712157815 14080 chr16 89925691 89925691 1 + C A rs148431869 89925700 + 89925680 89925720 41 CACCCACCCCCCAGGAGGGACGGAGCCACCACGGCCCCGAG CACCCACCCCCAAGGAGGGACGGAGCCACCACGGCCCCGAG < 41bp 1 0.459845327690166 1 0.786609947681427 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89925700 chr16:89925691 nonsynonymous SNV 0.035 0 12 hm5C_associated_SNPs_12020 0 0 1 0 0 Cytosol 1 0.500231643924335 0.426780104637146 0.999536712151331 hm5C_site_14080 DeepMRMD:0.426780104637146;iRNA_m5C:0.999536712151331 14081 chr16 89970563 89970563 1 + C G rs191814837 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCAGTGTGCGGCCGGACGCCAGCGTTTCC < 41bp 1 0.579986121382223 1 0.465707421302795 experiment 0.840027757235554 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970563 synonymous SNV . 0 26 hm5C_associated_SNPs_12021 0 0 1 0 2 Cytosol 1 0.500231643923812 1 0.999536712152377 hm5C_site_14081 DeepMRMD:1;iRNA_m5C:0.999536712152377 14082 chr16 89970566 89970566 1 + C G rs73276578 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCAGTGTGCGGCCCGAGGCCAGCGTTTCC < 41bp 1 0.481958046524689 1 0.345805585384369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970566 nonsynonymous SNV 0.002 3 29 hm5C_associated_SNPs_12022 0 0 1 0 2 Cytosol 1 0.500231643956455 1 0.99953671208709 hm5C_site_14082 DeepMRMD:1;iRNA_m5C:0.99953671208709 14083 chr16 89985117 89985117 1 + G A rs372719558 89985128 + 89985108 89985148 41 TTTTTTAACGTAAAGGAGATCCGCGGTGTGAGGGACCCCCT TTTTTTAACATAAAGGAGATCCGCGGTGTGAGGGACCCCCT < 41bp 1 0.592744351502888 1 0.189578026533127 experiment 0.814511296994224 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MC1R ENSG00000258839 UTR5 Human protein_coding chr16:89985128 chr16:89985117 . . 0 10 hm5C_associated_SNPs_12023 1 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_14083 DeepMRMD:1;iRNA_m5C:0.999536712157815 Malignant Melanoma Susceptibility Malignant Melanoma Susceptibility 14084 chr16 89985131 89985131 1 + C T rs3212379 89985128 + 89985108 89985148 41 TTTTTTAACGTAAAGGAGATCCGCGGTGTGAGGGACCCCCT TTTTTTAACGTAAAGGAGATCCGTGGTGTGAGGGACCCCCT < 41bp 1 0.473108920862163 1 0.491662800312042 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MC1R ENSG00000258839 UTR5 Human protein_coding chr16:89985128 chr16:89985131 . . 0 24 hm5C_associated_SNPs_12024 1 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_14084 DeepMRMD:1;iRNA_m5C:0.999536712157815 Malignant Melanoma Susceptibility Malignant Melanoma Susceptibility 14085 chr16 89985132 89985132 1 + G A rs557576978 89985128 + 89985108 89985148 41 TTTTTTAACGTAAAGGAGATCCGCGGTGTGAGGGACCCCCT TTTTTTAACGTAAAGGAGATCCGCAGTGTGAGGGACCCCCT < 41bp 1 0.671970096450187 1 0.241234362125397 experiment 0.656059807099626 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MC1R ENSG00000258839 UTR5 Human protein_coding chr16:89985128 chr16:89985132 . . 0 25 hm5C_associated_SNPs_12025 1 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_14085 DeepMRMD:1;iRNA_m5C:0.999536712157815 Malignant Melanoma Susceptibility Malignant Melanoma Susceptibility 14086 chr16 90001525 90001525 1 + C T rs61743676 90001517 + 90001497 90001537 41 GCACCCTCAAGCTGGCCACGCCCACCTACGGGGACCTCAAC GCACCCTCAAGCTGGCCACGCCCACCTATGGGGACCTCAAC < 41bp 1 0.0715575308544362 1 0.0835148394107819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TUBB3 ENSG00000198211;ENSG00000258947 CDS Human other chr16:90001517 chr16:90001525 synonymous SNV . 0 29 hm5C_associated_SNPs_12026 1 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_14086 DeepMRMD:1;iRNA_m5C:0.999536712157816 not specified not specified 14087 chr17 635964 635964 1 + C G rs143771876 635952 + 635932 635972 41 CTTCGCGCTCTGCACCTGGGCGCTGCGCCGCTCCCAGCCCG CTTCGCGCTCTGCACCTGGGCGCTGCGCCGCTGCCAGCCCG < 41bp 1 0.663914135341863 1 0.430984050035477 experiment 0.672171729316274 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM57A ENSG00000167695 CDS Human protein_coding chr17:635952 chr17:635964 nonsynonymous SNV 0.016 0 33 hm5C_associated_SNPs_12027 0 0 1 0 1 Ribosome 1 0.500231643918942 1 0.999536712162116 hm5C_site_14087 DeepMRMD:1;iRNA_m5C:0.999536712162116 14088 chr17 635971 635971 1 + C G rs146853090 635952 + 635932 635972 41 CTTCGCGCTCTGCACCTGGGCGCTGCGCCGCTCCCAGCCCG CTTCGCGCTCTGCACCTGGGCGCTGCGCCGCTCCCAGCCGG < 41bp 1 0.689039846459098 1 0.301605373620987 experiment 0.621920307081803 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM57A ENSG00000167695 CDS Human protein_coding chr17:635952 chr17:635971 synonymous SNV . 0 40 hm5C_associated_SNPs_12028 0 0 1 0 1 Ribosome 1 0.500231643866563 1 0.999536712266875 hm5C_site_14088 DeepMRMD:1;iRNA_m5C:0.999536712266875 14089 chr17 685746 685746 1 + C A rs536301279 685745 + 685725 685765 41 GCCCAGTGAAAGTGGTGTTTCCTTCCGGAGAGGTGGTGGAA GCCCAGTGAAAGTGGTGTTTCATTCCGGAGAGGTGGTGGAA < 41bp 1 0.151266224029893 1 0.0859014391899109 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRM3 ENSG00000171861 CDS Human protein_coding chr17:685745 chr17:685746 nonsynonymous SNV 0.764 4 22 hm5C_associated_SNPs_12029 0 0 0 0 0 chromatin 1 0.500231643921069 1 0.999536712157862 hm5C_site_14089 DeepMRMD:1;iRNA_m5C:0.999536712157862 14090 chr17 685752 685752 1 + G A rs2249542 685745 + 685725 685765 41 GCCCAGTGAAAGTGGTGTTTCCTTCCGGAGAGGTGGTGGAA GCCCAGTGAAAGTGGTGTTTCCTTCCGAAGAGGTGGTGGAA < 41bp 1 0.0492437350629868 1 0.159474015235901 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRM3 ENSG00000171861 CDS Human protein_coding chr17:685745 chr17:685752 nonsynonymous SNV 0.914 0 28 hm5C_associated_SNPs_12030 0 0 0 0 0 chromatin 1 0.500231643920554 1 0.999536712158891 hm5C_site_14090 DeepMRMD:1;iRNA_m5C:0.999536712158891 14091 chr17 691357 691357 1 + G A rs145957030 691367 + 691347 691387 41 CTGCAGCAAAGTGTTACTCACCAAAGGTAAGGACATCAAAG CTGCAGCAAAATGTTACTCACCAAAGGTAAGGACATCAAAG < 41bp 1 0.328380707990761 1 0.110429435968399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM3 ENSG00000171861 CDS Human protein_coding chr17:691367 chr17:691357 nonsynonymous SNV 0.997 4 11 hm5C_associated_SNPs_12031 0 0 0 0 1 chromatin 1 0.500231424299728 1 0.999537151400544 hm5C_site_14091 DeepMRMD:1;iRNA_m5C:0.999537151400544 14092 chr17 1628274 1628274 1 + G T rs113001863 1628258 + 1628238 1628278 41 GGGCGGCCTGGAGGAGATGGCCCAGGGCAGCGGGGGGCGGG GGGCGGCCTGGAGGAGATGGCCCAGGGCAGCGGGGGTCGGG < 41bp 1 0.391039250063574 1 0.357486188411713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1628258 chr17:1628274 synonymous SNV . 0 37 hm5C_associated_SNPs_12032 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_14092 DeepMRMD:1;iRNA_m5C:0.999536712157815 14093 chr17 1628274 1628274 1 + G T rs113001863 1628259 + 1628239 1628279 41 GGCGGCCTGGAGGAGATGGCCCAGGGCAGCGGGGGGCGGGA GGCGGCCTGGAGGAGATGGCCCAGGGCAGCGGGGGTCGGGA < 41bp 1 0.521969909876599 1 0.671383321285248 experiment 0.956060180246801 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1628259 chr17:1628274 synonymous SNV . 0 36 hm5C_associated_SNPs_12033 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643932007 0.657233357429504 0.999536712135986 hm5C_site_14093 DeepMRMD:0.657233357429504;iRNA_m5C:0.999536712135986 14094 chr17 1628274 1628274 1 + G T rs113001863 1628265 + 1628245 1628285 41 CTGGAGGAGATGGCCCAGGGCAGCGGGGGGCGGGAAGGCGC CTGGAGGAGATGGCCCAGGGCAGCGGGGGTCGGGAAGGCGC < 41bp 1 0.690367426798419 1 0.508522868156433 experiment 0.619265146403162 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1628265 chr17:1628274 synonymous SNV . 0 30 hm5C_associated_SNPs_12034 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.982954263687134 0.999536712157815 hm5C_site_14094 DeepMRMD:0.982954263687134;iRNA_m5C:0.999536712157815 14095 chr17 1637458 1637458 1 + G A rs8065251 1637447 + 1637427 1637467 41 GCGTCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG GCGTCTTCTTCGTGGGCCAGCTTGAGGCCCCACAGCACGTG < 41bp 1 0.54691885726793 1 0.324400395154953 experiment 0.90616228546414 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1637447 chr17:1637458 synonymous SNV . 0 32 hm5C_associated_SNPs_12035 1 0 0 0 1 Endoplasmic reticulum 1 0.500231643921037 1 0.999536712157926 hm5C_site_14095 DeepMRMD:1;iRNA_m5C:0.999536712157926 not specified not specified 14096 chr17 1733399 1733399 1 + A G rs5030749 1733413 + 1733393 1733433 41 CGGCCAACTGAGCGAGGGGGCCATTGCGGTGAGGAGGTGCC CGGCCAGCTGAGCGAGGGGGCCATTGCGGTGAGGAGGTGCC < 41bp 1 0.110997803503634 1 0.238330364227295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1733413 chr17:1733399 synonymous SNV . 0 7 hm5C_associated_SNPs_12038 0 0 1 0 1 chromatin 1 0.500231644122347 1 0.999536711755306 hm5C_site_14096 DeepMRMD:1;iRNA_m5C:0.999536711755306 14097 chr17 1747885 1747885 1 + G A rs189644474 1747884 + 1747864 1747904 41 GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTCG GTTTTCAGCTTTCATGTTGGCAACACAGTTGAACCCTCTCG < 41bp 1 0.563067205468154 1 0.152354001998901 experiment 0.873865589063693 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1747884 chr17:1747885 synonymous SNV . 0 22 hm5C_associated_SNPs_12039 0 0 1 0 2 chromatin 1 0.50023165230348 1 0.999536695393041 hm5C_site_14097 DeepMRMD:1;iRNA_m5C:0.999536695393041 14098 chr17 1801137 1801137 1 + G T rs1051315 1801122 + 1801102 1801142 41 AAAATTGTCTCTTCTGAGGACCGCTGATAAGCATTGACTTG AAAATTGTCTCTTCTGAGGACCGCTGATAAGCATTTACTTG < 41bp 1 0.13274557035671 1 0.0731055438518524 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPA1 ENSG00000132383 UTR3 Human protein_coding chr17:1801122 chr17:1801137 . . 0 36 hm5C_associated_SNPs_12040 0 0 1 0 0 chromatin 1 0.500231623388521 1 0.999536753222958 hm5C_site_14098 DeepMRMD:1;iRNA_m5C:0.999536753222958 14099 chr17 1801138 1801138 1 + A C rs1051318 1801122 + 1801102 1801142 41 AAAATTGTCTCTTCTGAGGACCGCTGATAAGCATTGACTTG AAAATTGTCTCTTCTGAGGACCGCTGATAAGCATTGCCTTG < 41bp 1 0.170883627845671 1 0.116237491369247 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPA1 ENSG00000132383 UTR3 Human protein_coding chr17:1801122 chr17:1801138 . . 0 37 hm5C_associated_SNPs_12041 0 0 1 0 0 chromatin 1 0.500231483751872 1 0.999537032496256 hm5C_site_14099 DeepMRMD:1;iRNA_m5C:0.999537032496256 14100 chr17 2240878 2240878 1 + C T rs113461397 2240888 + 2240868 2240908 41 GGGAGCGCGGCGGGCGGGGGCTCCGCCTTGCGCGTGGGGCG GGGAGCGCGGTGGGCGGGGGCTCCGCCTTGCGCGTGGGGCG < 41bp 1 0.676197661860512 1 0.496477991342545 experiment 0.647604676278976 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SGSM2 ENSG00000141258 UTR5 Human protein_coding chr17:2240888 chr17:2240878 . . 0 11 hm5C_associated_SNPs_12042 0 0 1 0 0 Cytosol 1 0.500231645120536 1 0.999536709758928 hm5C_site_14100 DeepMRMD:1;iRNA_m5C:0.999536709758928 14101 chr17 2266381 2266381 1 + G T rs112097002 2266362 + 2266342 2266382 41 CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGG CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGTG < 41bp 1 0.152937678308574 1 0.218549787998199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266362 chr17:2266381 nonsynonymous SNV 0.914 4 40 hm5C_associated_SNPs_12043 0 0 1 0 2 Cytosol 1 0.500231647397868 1 0.999536705204264 hm5C_site_14101 DeepMRMD:1;iRNA_m5C:0.999536705204264 14102 chr17 2266381 2266381 1 + G T rs112097002 2266363 + 2266343 2266383 41 CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGGT CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGTGT < 41bp 1 0.510032569020281 1 0.631483852863312 experiment 0.979934861959438 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266363 chr17:2266381 nonsynonymous SNV 0.914 4 39 hm5C_associated_SNPs_12044 0 0 1 0 2 Cytosol 1 0.500231644618121 0.737032294273376 0.999536710763758 hm5C_site_14102 DeepMRMD:0.737032294273376;iRNA_m5C:0.999536710763758 14103 chr17 2541480 2541480 1 + T C rs533089397 2541477 + 2541457 2541497 41 ATTTTCCCCTGTGTGGAAGACACTTAGTGGCATATTTAAAT ATTTTCCCCTGTGTGGAAGACACCTAGTGGCATATTTAAAT < 41bp 1 0.337807775562646 1 0.0292070508003235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAFAH1B1 ENSG00000007168 UTR5 Human protein_coding chr17:2541477 chr17:2541480 . . 0 24 hm5C_associated_SNPs_12045 0 0 1 12 1 Ribosome 1 0.500231644362482 1 0.999536711275035 hm5C_site_14103 DeepMRMD:1;iRNA_m5C:0.999536711275035 14104 chr17 2585948 2585948 1 + A G rs144602512 2585961 + 2585941 2585981 41 GTGTGTCATGGTACAAATCACTATTCGTTTTTGGTGTTTTT GTGTGTCGTGGTACAAATCACTATTCGTTTTTGGTGTTTTT < 41bp 1 0.0735019182079949 1 0.0454476475715637 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAFAH1B1 ENSG00000007168 UTR3 Human protein_coding chr17:2585961 chr17:2585948 . . 0 8 hm5C_associated_SNPs_12046 1 0 1 1 0 Ribosome 1 0.500325647786082 1 0.999348704427837 hm5C_site_14104 DeepMRMD:1;iRNA_m5C:0.999348704427837 Lissencephaly/Subcortical Band Heterotopia Lissencephaly/Subcortical Band Heterotopia 14105 chr17 3629843 3629843 1 + C T rs190744073 3629847 + 3629827 3629867 41 AAAGAAGTAAACTAGCCGGGCACAGTGGCGTGCGCCTGTAG AAAGAAGTAAACTAGCTGGGCACAGTGGCGTGCGCCTGTAG < 41bp 1 0.695939621818331 1 0.316081285476685 experiment 0.608120756363338 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HASPIN ENSG00000177602 UTR3 Human protein_coding chr17:3629847 chr17:3629843 . . 0 17 hm5C_associated_SNPs_12047 0 0 1 0 0 unknown 1 0.50023161983579 1 0.999536760328419 hm5C_site_14105 DeepMRMD:1;iRNA_m5C:0.999536760328419 14106 chr17 3629848 3629848 1 + A G rs9896869 3629847 + 3629827 3629867 41 AAAGAAGTAAACTAGCCGGGCACAGTGGCGTGCGCCTGTAG AAAGAAGTAAACTAGCCGGGCGCAGTGGCGTGCGCCTGTAG < 41bp 1 0.687001987491037 1 0.463645875453949 experiment 0.625996025017926 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HASPIN ENSG00000177602 UTR3 Human protein_coding chr17:3629847 chr17:3629848 . . 0 22 hm5C_associated_SNPs_12048 0 0 1 0 0 unknown 1 0.500231640828319 1 0.999536718343362 hm5C_site_14106 DeepMRMD:1;iRNA_m5C:0.999536718343362 14107 chr17 3629859 3629859 1 + C T rs72825407 3629847 + 3629827 3629867 41 AAAGAAGTAAACTAGCCGGGCACAGTGGCGTGCGCCTGTAG AAAGAAGTAAACTAGCCGGGCACAGTGGCGTGTGCCTGTAG < 41bp 1 0.66183794829342 1 0.198714464902878 experiment 0.67632410341316 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HASPIN ENSG00000177602 UTR3 Human protein_coding chr17:3629847 chr17:3629859 . . 0 33 hm5C_associated_SNPs_12050 0 0 1 0 0 unknown 1 0.500231644354257 1 0.999536711291485 hm5C_site_14107 DeepMRMD:1;iRNA_m5C:0.999536711291485 14108 chr17 3629859 3629859 1 + C T rs72825407 3629870 + 3629850 3629890 41 AGTGGCGTGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG AGTGGCGTGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG < 41bp 1 0.45529584868363 1 0.470113813877106 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HASPIN ENSG00000177602 UTR3 Human protein_coding chr17:3629870 chr17:3629859 . . 0 10 hm5C_associated_SNPs_12051 0 0 1 0 0 unknown 1 0.500231643905223 1 0.999536712189554 hm5C_site_14108 DeepMRMD:1;iRNA_m5C:0.999536712189554 14109 chr17 3629859 3629859 1 + C T rs72825407 3629871 + 3629851 3629891 41 GTGGCGTGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG GTGGCGTGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG < 41bp 1 0.646135442428542 1 0.803747951984406 experiment 0.707729115142916 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control HASPIN ENSG00000177602 UTR3 Human protein_coding chr17:3629871 chr17:3629859 . . 0 9 hm5C_associated_SNPs_12052 0 0 1 0 0 unknown 1 0.500231643921316 0.392504096031188 0.999536712157368 hm5C_site_14109 DeepMRMD:0.392504096031188;iRNA_m5C:0.999536712157368 14110 chr17 3629859 3629859 1 + C T rs72825407 3629874 + 3629854 3629894 41 GCGTGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAG GCGTGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAG < 41bp 1 0.474631729544096 1 0.172777503728867 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control HASPIN ENSG00000177602 UTR3 Human protein_coding chr17:3629874 chr17:3629859 . . 0 6 hm5C_associated_SNPs_12053 0 0 1 0 0 unknown 1 0.500231643921083 1 0.999536712157833 hm5C_site_14110 DeepMRMD:1;iRNA_m5C:0.999536712157833 14111 chr17 3629867 3629867 1 + G A rs178322 3629847 + 3629827 3629867 41 AAAGAAGTAAACTAGCCGGGCACAGTGGCGTGCGCCTGTAG AAAGAAGTAAACTAGCCGGGCACAGTGGCGTGCGCCTGTAA < 41bp 1 0.667238732268221 1 0.338166892528534 experiment 0.665522535463559 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HASPIN ENSG00000177602 UTR3 Human protein_coding chr17:3629847 chr17:3629867 . . 0 41 hm5C_associated_SNPs_12054 0 0 1 0 0 unknown 1 0.500231639318326 1 0.999536721363347 hm5C_site_14111 DeepMRMD:1;iRNA_m5C:0.999536721363347 14112 chr17 3629867 3629867 1 + G A rs178322 3629870 + 3629850 3629890 41 AGTGGCGTGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG AGTGGCGTGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAG < 41bp 1 0.509596146375383 1 0.71562385559082 experiment 0.980807707249234 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HASPIN ENSG00000177602 UTR3 Human protein_coding chr17:3629870 chr17:3629867 . . 0 18 hm5C_associated_SNPs_12055 0 0 1 0 0 unknown 1 0.500231636493556 0.56875228881836 0.999536727012888 hm5C_site_14112 DeepMRMD:0.56875228881836;iRNA_m5C:0.999536727012888 14113 chr17 3629867 3629867 1 + G A rs178322 3629871 + 3629851 3629891 41 GTGGCGTGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG GTGGCGTGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGG < 41bp 1 0.686918461877151 1 0.856077313423157 experiment 0.626163076245697 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control HASPIN ENSG00000177602 UTR3 Human protein_coding chr17:3629871 chr17:3629867 . . 0 17 hm5C_associated_SNPs_12056 0 0 1 0 0 unknown 1 0.500231643921093 0.287845373153686 0.999536712157814 hm5C_site_14113 DeepMRMD:0.287845373153686;iRNA_m5C:0.999536712157814 14114 chr17 3629867 3629867 1 + G A rs178322 3629874 + 3629854 3629894 41 GCGTGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAG GCGTGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAG < 41bp 1 0.432800931881196 1 0.0850963890552521 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control HASPIN ENSG00000177602 UTR3 Human protein_coding chr17:3629874 chr17:3629867 . . 0 14 hm5C_associated_SNPs_12057 0 0 1 0 0 unknown 1 0.50023164356854 1 0.99953671286292 hm5C_site_14114 DeepMRMD:1;iRNA_m5C:0.99953671286292 14115 chr17 4053204 4053204 1 + T A rs184653285 4053212 + 4053192 4053232 41 CGCATCCAGAGCTTTCGTGACCGGGGACTGTTCTGAAGCAG CGCATCCAGAGCATTCGTGACCGGGGACTGTTCTGAAGCAG < 41bp 1 0.619318073656007 1 0.873537003993988 experiment 0.761363852687986 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4053212 chr17:4053204 synonymous SNV . 0 13 hm5C_associated_SNPs_12059 0 0 0 0 1 Ribosome 1 0.500231716893134 0.252925992012024 0.999536566213733 hm5C_site_14115 DeepMRMD:0.252925992012024;iRNA_m5C:0.999536566213733 14116 chr17 4053224 4053224 1 + C G rs189292607 4053212 + 4053192 4053232 41 CGCATCCAGAGCTTTCGTGACCGGGGACTGTTCTGAAGCAG CGCATCCAGAGCTTTCGTGACCGGGGACTGTTGTGAAGCAG < 41bp 1 0.626808243880949 1 0.876533627510071 experiment 0.746383512238103 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4053212 chr17:4053224 nonsynonymous SNV 0.978 3 33 hm5C_associated_SNPs_12060 0 0 1 0 1 Ribosome 1 0.500231643475592 0.246932744979858 0.999536713048816 hm5C_site_14116 DeepMRMD:0.246932744979858;iRNA_m5C:0.999536713048816 14117 chr17 4435911 4435911 1 + C A rs142224404 4435915 + 4435895 4435935 41 CTAAAAGGGGTCATGCCGACCAGCTCGGGGACCAGCTCAAG CTAAAAGGGGTCATGCAGACCAGCTCGGGGACCAGCTCAAG < 41bp 1 0.332188086585701 1 0.139831364154816 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4435915 chr17:4435911 synonymous SNV . 0 17 hm5C_associated_SNPs_12061 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14117 DeepMRMD:1;iRNA_m5C:0.999536712157815 14118 chr17 4712615 4712615 1 + A G rs202012648 4712616 + 4712596 4712636 41 TACCTGGAGAATTACCTCAACCGTCTCTTGACCATGTCTTT TACCTGGAGAATTACCTCAGCCGTCTCTTGACCATGTCTTT < 41bp 1 0.0214350463155222 1 0.28364160656929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4712616 chr17:4712615 nonsynonymous SNV 0.998 3 20 hm5C_associated_SNPs_12062 0 0 1 0 2 Cytosol 1 0.500231643926387 1 0.999536712147227 hm5C_site_14118 DeepMRMD:1;iRNA_m5C:0.999536712147227 14119 chr17 4712617 4712617 1 + C T rs2286672 4712616 + 4712596 4712636 41 TACCTGGAGAATTACCTCAACCGTCTCTTGACCATGTCTTT TACCTGGAGAATTACCTCAACTGTCTCTTGACCATGTCTTT < 41bp 1 0.0659316058374709 1 0.150715529918671 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4712616 chr17:4712617 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_12063 0 0 1 0 2 Cytosol 1 0.500231651946058 1 0.999536696107884 hm5C_site_14119 DeepMRMD:1;iRNA_m5C:0.999536696107884 14120 chr17 4720033 4720033 1 + C T rs145073180 4720020 + 4720000 4720040 41 TTATCACCAAGGACTGGGTGCAGCTGGACCGGCCTTTCGAA TTATCACCAAGGACTGGGTGCAGCTGGACCGGCTTTTCGAA < 41bp 1 0.31528912000139 1 0.115084201097488 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4720020 chr17:4720033 nonsynonymous SNV 0.996 3 34 hm5C_associated_SNPs_12064 0 0 1 0 1 Cytosol 1 0.500231643905505 1 0.999536712188989 hm5C_site_14120 DeepMRMD:1;iRNA_m5C:0.999536712188989 14121 chr17 4797361 4797361 1 + C T rs56279314 4797353 + 4797333 4797373 41 AGGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACC AGGAGATCACCGGGACCCAGCCCCCATATGGGGGCGGCACC < 41bp 1 0.0782738964413894 1 0.0588870048522949 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797353 chr17:4797361 synonymous SNV . 0 29 hm5C_associated_SNPs_12065 0 0 1 0 2 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_14121 DeepMRMD:1;iRNA_m5C:0.999536712157812 14122 chr17 4797361 4797361 1 + C T rs56279314 4797354 + 4797334 4797374 41 GGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCA GGAGATCACCGGGACCCAGCCCCCATATGGGGGCGGCACCA < 41bp 1 0.491819260510311 1 0.847740769386292 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797354 chr17:4797361 synonymous SNV . 0 28 hm5C_associated_SNPs_12066 0 0 1 0 2 Ribosome 1 0.500231643921092 0.304518461227416 0.999536712157815 hm5C_site_14122 DeepMRMD:0.304518461227416;iRNA_m5C:0.999536712157815 14123 chr17 4797361 4797361 1 + C T rs56279314 4797355 + 4797335 4797375 41 GAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCAT GAGATCACCGGGACCCAGCCCCCATATGGGGGCGGCACCAT < 41bp 1 0.102910196435144 1 0.296115875244141 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797355 chr17:4797361 synonymous SNV . 0 27 hm5C_associated_SNPs_12067 0 0 1 0 2 Ribosome 1 0.50023164302654 1 0.99953671394692 hm5C_site_14123 DeepMRMD:1;iRNA_m5C:0.99953671394692 14124 chr17 4797361 4797361 1 + C T rs56279314 4797356 + 4797336 4797376 41 AGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATG AGATCACCGGGACCCAGCCCCCATATGGGGGCGGCACCATG < 41bp 1 0.126078716423443 1 0.181475907564163 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797356 chr17:4797361 synonymous SNV . 0 26 hm5C_associated_SNPs_12068 0 0 1 0 2 Ribosome 1 0.500231643921493 1 0.999536712157014 hm5C_site_14124 DeepMRMD:1;iRNA_m5C:0.999536712157014 14125 chr17 4797361 4797361 1 + C T rs56279314 4797357 + 4797337 4797377 41 GATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATGG GATCACCGGGACCCAGCCCCCATATGGGGGCGGCACCATGG < 41bp 1 0.190009236832274 1 0.324761211872101 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797357 chr17:4797361 synonymous SNV . 0 25 hm5C_associated_SNPs_12069 0 0 1 0 2 Ribosome 1 0.500231636680266 1 0.999536726639468 hm5C_site_14125 DeepMRMD:1;iRNA_m5C:0.999536726639468 14126 chr17 4797361 4797361 1 + C T rs56279314 4797367 + 4797347 4797387 41 ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG ACCCAGCCCCCATATGGGGGCGGCACCATGGTGGTCCAGCG < 41bp 1 0.447329379094267 1 0.248428523540497 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797367 chr17:4797361 synonymous SNV . 0 15 hm5C_associated_SNPs_12070 0 0 1 0 2 Ribosome 1 0.50023164841239 1 0.99953670317522 hm5C_site_14126 DeepMRMD:1;iRNA_m5C:0.99953670317522 14127 chr17 4856376 4856376 1 + A G rs238238 4856386 + 4856366 4856406 41 AACATCAACAATACTCTGGGCCCTGCTCTGCTGCAAAAGGC AACATCAACAGTACTCTGGGCCCTGCTCTGCTGCAAAAGGC < 41bp 1 0.0754226825513369 1 0.122461467981339 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856386 chr17:4856376 nonsynonymous SNV 0.997 0 11 hm5C_associated_SNPs_12071 2 1 1 0 1 nucleus 1 0.500231644446183 1 0.999536711107633 hm5C_site_14127 DeepMRMD:1;iRNA_m5C:0.999536711107633 Glycogen storage disease type 13 Glycogen storage disease type 13 14128 chr17 4856390 4856390 1 + G C rs143945974 4856386 + 4856366 4856406 41 AACATCAACAATACTCTGGGCCCTGCTCTGCTGCAAAAGGC AACATCAACAATACTCTGGGCCCTCCTCTGCTGCAAAAGGC < 41bp 1 0.0222364583834786 1 0.0793352127075195 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856386 chr17:4856390 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_12072 2 0 1 0 1 nucleus 1 0.500231643921197 1 0.999536712157606 hm5C_site_14128 DeepMRMD:1;iRNA_m5C:0.999536712157606 Glycogen storage disease type 13 Glycogen storage disease type 13 14129 chr17 4856580 4856580 1 + T C rs238239 4856570 + 4856550 4856590 41 CAAACTCACCCTTCCAGAAACTAAGCGTTGTGGATCAAGAA CAAACTCACCCTTCCAGAAACTAAGCGTTGCGGATCAAGAA < 41bp 1 0.19777864546412 1 0.137696832418442 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856570 chr17:4856580 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_12073 2 0 1 0 1 nucleus 1 0.500231643921101 1 0.999536712157798 hm5C_site_14129 DeepMRMD:1;iRNA_m5C:0.999536712157798 Glycogen storage disease type 13 Glycogen storage disease type 13 14130 chr17 4859364 4859364 1 + C T rs2230257 4859344 + 4859324 4859364 41 ATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCC ATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCT < 41bp 1 0.522749245927658 1 0.405509471893311 experiment 0.954501508144684 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859344 chr17:4859364 synonymous SNV . 0 41 hm5C_associated_SNPs_12074 2 0 1 0 2 nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_14130 DeepMRMD:1;iRNA_m5C:0.999536712157816 Glycogen storage disease type 13 Glycogen storage disease type 13 14131 chr17 4859364 4859364 1 + C T rs2230257 4859345 + 4859325 4859365 41 TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCCG TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCTG < 41bp 1 0.211612381545924 1 0.287932217121124 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859345 chr17:4859364 synonymous SNV . 0 40 hm5C_associated_SNPs_12075 2 0 1 0 2 nucleus 1 0.500231643928297 1 0.999536712143406 hm5C_site_14131 DeepMRMD:1;iRNA_m5C:0.999536712143406 Glycogen storage disease type 13 Glycogen storage disease type 13 14132 chr17 4859364 4859364 1 + C T rs2230257 4859357 + 4859337 4859377 41 CACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGG CACCAACCCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGG < 41bp 1 0.231656725366409 1 0.0801554024219513 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859357 chr17:4859364 synonymous SNV . 0 28 hm5C_associated_SNPs_12076 2 0 1 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14132 DeepMRMD:1;iRNA_m5C:0.999536712157815 Glycogen storage disease type 13 Glycogen storage disease type 13 14133 chr17 4859364 4859364 1 + C T rs2230257 4859358 + 4859338 4859378 41 ACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGC ACCAACCCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGGC < 41bp 1 0.364824947211001 1 0.180778324604034 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859358 chr17:4859364 synonymous SNV . 0 27 hm5C_associated_SNPs_12077 2 0 1 0 2 nucleus 1 0.500282343912996 1 0.999435312174007 hm5C_site_14133 DeepMRMD:1;iRNA_m5C:0.999435312174007 Glycogen storage disease type 13 Glycogen storage disease type 13 14134 chr17 4859364 4859364 1 + C T rs2230257 4859359 + 4859339 4859379 41 CCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCC CCAACCCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGGCC < 41bp 1 0.482203135197092 1 0.717622756958008 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859359 chr17:4859364 synonymous SNV . 0 26 hm5C_associated_SNPs_12078 2 0 1 0 2 nucleus 1 0.500231643921092 0.564754486083984 0.999536712157815 hm5C_site_14134 DeepMRMD:0.564754486083984;iRNA_m5C:0.999536712157815 Glycogen storage disease type 13 Glycogen storage disease type 13 14135 chr17 4859364 4859364 1 + C T rs2230257 4859363 + 4859343 4859383 41 CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA CCCCAAGAGGATTGCCCAGGCTGTTGAGAAGAAGGCCTGCA < 41bp 1 0.34103574123648 1 0.107280939817429 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859363 chr17:4859364 synonymous SNV . 0 22 hm5C_associated_SNPs_12079 2 0 1 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14135 DeepMRMD:1;iRNA_m5C:0.999536712157815 Glycogen storage disease type 13 Glycogen storage disease type 13 14136 chr17 4859364 4859364 1 + C T rs2230257 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCTGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA < 41bp 1 0.136367374189168 1 0.0723675191402435 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859364 synonymous SNV . 0 7 hm5C_associated_SNPs_12080 2 0 1 0 2 nucleus 1 0.500231954817976 1 0.999536090364048 hm5C_site_14136 DeepMRMD:1;iRNA_m5C:0.999536090364048 Glycogen storage disease type 13 Glycogen storage disease type 13 14137 chr17 4859364 4859364 1 + C T rs2230257 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCTGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT < 41bp 1 0.535579486433786 1 0.101447224617004 experiment 0.928841027132428 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859364 synonymous SNV . 0 3 hm5C_associated_SNPs_12082 2 0 1 0 2 nucleus 1 0.500231643921098 1 0.999536712157804 hm5C_site_14137 DeepMRMD:1;iRNA_m5C:0.999536712157804 Glycogen storage disease type 13 Glycogen storage disease type 13 14138 chr17 4859365 4859365 1 + G A rs61735456 4859345 + 4859325 4859365 41 TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCCG TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCCA < 41bp 1 0.191190264117602 1 0.248302429914474 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859345 chr17:4859365 nonsynonymous SNV 0.997 0 41 hm5C_associated_SNPs_12083 2 0 1 0 2 nucleus 1 0.500231643928296 1 0.999536712143407 hm5C_site_14138 DeepMRMD:1;iRNA_m5C:0.999536712143407 Glycogen storage disease type 13 Glycogen storage disease type 13 14139 chr17 4859365 4859365 1 + G A rs61735456 4859357 + 4859337 4859377 41 CACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGG CACCAACCCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGG < 41bp 1 0.237399176792241 1 0.0590374171733856 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859357 chr17:4859365 nonsynonymous SNV 0.997 0 29 hm5C_associated_SNPs_12084 2 0 1 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14139 DeepMRMD:1;iRNA_m5C:0.999536712157815 Glycogen storage disease type 13 Glycogen storage disease type 13 14140 chr17 4859365 4859365 1 + G A rs61735456 4859358 + 4859338 4859378 41 ACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGC ACCAACCCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGGC < 41bp 1 0.273082618266427 1 0.330487161874771 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859358 chr17:4859365 nonsynonymous SNV 0.997 0 28 hm5C_associated_SNPs_12085 2 0 1 0 2 nucleus 1 0.500231644015845 1 0.999536711968311 hm5C_site_14140 DeepMRMD:1;iRNA_m5C:0.999536711968311 Glycogen storage disease type 13 Glycogen storage disease type 13 14141 chr17 4859365 4859365 1 + G A rs61735456 4859359 + 4859339 4859379 41 CCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCC CCAACCCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGGCC < 41bp 1 0.397884466065457 1 0.438932120800018 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859359 chr17:4859365 nonsynonymous SNV 0.997 0 27 hm5C_associated_SNPs_12086 2 0 1 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14141 DeepMRMD:1;iRNA_m5C:0.999536712157815 Glycogen storage disease type 13 Glycogen storage disease type 13 14142 chr17 4859365 4859365 1 + G A rs61735456 4859363 + 4859343 4859383 41 CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA CCCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGGCCTGCA < 41bp 1 0.0991913214614416 1 0.0716718733310699 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859363 chr17:4859365 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_12087 2 0 1 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14142 DeepMRMD:1;iRNA_m5C:0.999536712157815 Glycogen storage disease type 13 Glycogen storage disease type 13 14143 chr17 4859365 4859365 1 + G A rs61735456 4859364 + 4859344 4859384 41 CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA CCCAAGAGGATTGCCCAGGCCATTGAGAAGAAGGCCTGCAA < 41bp 1 0.220977662888377 1 0.131863296031952 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859364 chr17:4859365 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_12088 2 0 1 0 2 nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_14143 DeepMRMD:1;iRNA_m5C:0.999536712157815 Glycogen storage disease type 13 Glycogen storage disease type 13 14144 chr17 4859365 4859365 1 + G A rs61735456 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCCATTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA < 41bp 1 0.128329015730899 1 0.0538194179534912 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859365 nonsynonymous SNV 0.997 0 8 hm5C_associated_SNPs_12089 2 0 1 0 2 nucleus 1 0.50023195905879 1 0.999536081882421 hm5C_site_14144 DeepMRMD:1;iRNA_m5C:0.999536081882421 Glycogen storage disease type 13 Glycogen storage disease type 13 14145 chr17 4859365 4859365 1 + G A rs61735456 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCATTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT < 41bp 1 0.474435605684977 1 0.132857322692871 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859365 nonsynonymous SNV 0.997 0 4 hm5C_associated_SNPs_12091 2 0 1 0 2 nucleus 1 0.500231643921098 1 0.999536712157804 hm5C_site_14145 DeepMRMD:1;iRNA_m5C:0.999536712157804 Glycogen storage disease type 13 Glycogen storage disease type 13 14146 chr17 4859365 4859365 1 + G A rs61735456 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA ATTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA < 41bp 1 0.4558105751811 1 0.0923383235931396 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859365 nonsynonymous SNV 0.997 0 1 hm5C_associated_SNPs_12092 2 0 1 0 2 nucleus 1 0.50023164391641 1 0.99953671216718 hm5C_site_14146 DeepMRMD:1;iRNA_m5C:0.99953671216718 Glycogen storage disease type 13 Glycogen storage disease type 13 14147 chr17 4859412 4859412 1 + C T rs114208569 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATT < 41bp 1 0.361308971020338 1 0.195183604955673 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859412 synonymous SNV . 0 41 hm5C_associated_SNPs_12093 0 0 1 0 2 nucleus 1 0.500231643920624 1 0.999536712158752 hm5C_site_14147 DeepMRMD:1;iRNA_m5C:0.999536712158752 14148 chr17 4859412 4859412 1 + C T rs114208569 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AACTGTCTGCTGCTGAAGGTCAACCAGATTGGCTCGGTGAC < 41bp 1 0.366458154370764 1 0.207307249307632 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859412 synonymous SNV . 0 30 hm5C_associated_SNPs_12094 0 0 1 0 2 nucleus 1 0.500231643920913 1 0.999536712158174 hm5C_site_14148 DeepMRMD:1;iRNA_m5C:0.999536712158174 14149 chr17 4859412 4859412 1 + C T rs114208569 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATTGGCTCGGTGACCGAATCGATCCAGGCGTGAG < 41bp 1 0.521932091666623 1 0.155814230442047 experiment 0.956135816666754 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859412 synonymous SNV . 0 10 hm5C_associated_SNPs_12095 0 0 1 0 2 nucleus 1 0.500231643921086 1 0.999536712157828 hm5C_site_14149 DeepMRMD:1;iRNA_m5C:0.999536712157828 14150 chr17 4859412 4859412 1 + C T rs114208569 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATTGGCTCGGTGACCGAATCGATCCAGGCGTGAGT < 41bp 1 0.391685921481744 1 0.763375580310822 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859412 synonymous SNV . 0 9 hm5C_associated_SNPs_12096 0 0 1 0 2 nucleus 1 0.500231512773274 0.473248839378356 0.999536974453452 hm5C_site_14150 DeepMRMD:0.473248839378356;iRNA_m5C:0.999536974453452 14151 chr17 4859418 4859418 1 + G A rs527864393 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCAGTGAC < 41bp 1 0.403461215931372 1 0.238792032003403 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859418 synonymous SNV . 0 36 hm5C_associated_SNPs_12097 1 0 1 0 2 nucleus 1 0.500231483409075 1 0.999537033181851 hm5C_site_14151 DeepMRMD:1;iRNA_m5C:0.999537033181851 Glycogen storage disease type 13 Glycogen storage disease type 13 14152 chr17 4859418 4859418 1 + G A rs527864393 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCAGTGACCGAATCGATCCAGGCGTGAG < 41bp 1 0.519837916328788 1 0.117825120687485 experiment 0.960324167342425 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859418 synonymous SNV . 0 16 hm5C_associated_SNPs_12098 1 0 1 0 2 nucleus 1 0.500231699072574 1 0.999536601854851 hm5C_site_14152 DeepMRMD:1;iRNA_m5C:0.999536601854851 Glycogen storage disease type 13 Glycogen storage disease type 13 14153 chr17 4859418 4859418 1 + G A rs527864393 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCAGTGACCGAATCGATCCAGGCGTGAGT < 41bp 1 0.386493772967423 1 0.720782399177551 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859418 synonymous SNV . 0 15 hm5C_associated_SNPs_12099 1 0 1 0 2 nucleus 1 0.500231644639333 0.558435201644898 0.999536710721334 hm5C_site_14153 DeepMRMD:0.558435201644898;iRNA_m5C:0.999536710721334 Glycogen storage disease type 13 Glycogen storage disease type 13 14154 chr17 4859889 4859889 1 + T C rs533687145 4859885 + 4859865 4859905 41 CAGGTGCAAACTGGCTCAGTCTAATGGCTGGGGGGTGATGG CAGGTGCAAACTGGCTCAGTCTAACGGCTGGGGGGTGATGG < 41bp 1 0.257780562730096 1 0.0913253426551819 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859885 chr17:4859889 synonymous SNV . 0 25 hm5C_associated_SNPs_12100 0 0 1 0 2 nucleus 1 0.50023164398925 1 0.999536712021501 hm5C_site_14154 DeepMRMD:1;iRNA_m5C:0.999536712021501 14155 chr17 4901244 4901244 1 + C G rs566687755 4901256 + 4901236 4901276 41 TCCCGCCCCAGCTCGCGCTGCCCGGGCGGGCGCCGGCCGCT TCCCGCCCGAGCTCGCGCTGCCCGGGCGGGCGCCGGCCGCT < 41bp 1 0.620498499260704 1 0.23760262131691 experiment 0.759003001478593 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1C ENSG00000129250 UTR5 Human protein_coding chr17:4901256 chr17:4901244 . . 0 9 hm5C_associated_SNPs_12101 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_14155 DeepMRMD:1;iRNA_m5C:0.999536712157814 14156 chr17 4905377 4905377 1 + C A rs138692366 4905366 + 4905346 4905386 41 CCCTCCAGCTCTGTGAGGACCTCTTCTCTCGCGTTAGTGAG CCCTCCAGCTCTGTGAGGACCTCTTCTCTCGAGTTAGTGAG < 41bp 1 0.0912866739935913 1 0.0463910102844238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905366 chr17:4905377 synonymous SNV . 0 32 hm5C_associated_SNPs_12103 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14156 DeepMRMD:1;iRNA_m5C:0.999536712157815 14157 chr17 4923851 4923851 1 + G A rs78356534 4923870 + 4923850 4923890 41 TGGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACCGCCC TAGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACCGCCC < 41bp 1 0.119057585119261 1 0.10008242726326 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4923870 chr17:4923851 synonymous SNV . 0 2 hm5C_associated_SNPs_12104 1 0 1 0 1 Ribosome 1 0.50023139923265 1 0.999537201534699 hm5C_site_14157 DeepMRMD:1;iRNA_m5C:0.999537201534699 not specified not specified 14158 chr17 4926860 4926860 1 + C A rs78970955 4926871 + 4926851 4926891 41 ACCGCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCA ACCGCATGCAGTCAGCCCGGCCCCCCTCGCCACCACTGTCA < 41bp 1 0.063015400054192 1 0.0317761301994324 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926871 chr17:4926860 nonsynonymous SNV 0.002 1 10 hm5C_associated_SNPs_12105 1 0 1 0 1 Ribosome 1 0.500231643921079 1 0.999536712157842 hm5C_site_14158 DeepMRMD:1;iRNA_m5C:0.999536712157842 not specified not specified 14159 chr17 4926860 4926860 1 + C A rs78970955 4926874 + 4926854 4926894 41 GCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGC GCATGCAGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGC < 41bp 1 0.10179929919069 1 0.0194081366062164 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926874 chr17:4926860 nonsynonymous SNV 0.002 1 7 hm5C_associated_SNPs_12106 1 0 1 0 1 Ribosome 1 0.500231691667013 1 0.999536616665975 hm5C_site_14159 DeepMRMD:1;iRNA_m5C:0.999536616665975 not specified not specified 14160 chr17 4926860 4926860 1 + C A rs78970955 4926880 + 4926860 4926900 41 CGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAG AGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAG < 41bp 1 0.101183507081105 1 0.23059493303299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926880 chr17:4926860 nonsynonymous SNV 0.002 1 1 hm5C_associated_SNPs_12107 1 0 1 0 1 Ribosome 1 0.500231643828136 1 0.999536712343728 hm5C_site_14160 DeepMRMD:1;iRNA_m5C:0.999536712343728 not specified not specified 14161 chr17 4926882 4926882 1 + A G rs346828 4926871 + 4926851 4926891 41 ACCGCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCA ACCGCATGCCGTCAGCCCGGCCCCCCTCGCCGCCACTGTCA < 41bp 1 0.0756128277492745 1 0.0296020209789276 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926871 chr17:4926882 synonymous SNV . 0 32 hm5C_associated_SNPs_12108 1 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_14161 DeepMRMD:1;iRNA_m5C:0.999536712157814 not specified not specified 14162 chr17 4926882 4926882 1 + A G rs346828 4926874 + 4926854 4926894 41 GCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGC GCATGCCGTCAGCCCGGCCCCCCTCGCCGCCACTGTCAAGC < 41bp 1 0.0922966504573643 1 0.04963019490242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926874 chr17:4926882 synonymous SNV . 0 29 hm5C_associated_SNPs_12109 1 0 1 0 0 Ribosome 1 0.500231644296626 1 0.999536711406749 hm5C_site_14162 DeepMRMD:1;iRNA_m5C:0.999536711406749 not specified not specified 14163 chr17 4926882 4926882 1 + A G rs346828 4926880 + 4926860 4926900 41 CGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAG CGTCAGCCCGGCCCCCCTCGCCGCCACTGTCAAGCTGGGAG < 41bp 1 0.160904987535157 1 0.250459581613541 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926880 chr17:4926882 synonymous SNV . 0 23 hm5C_associated_SNPs_12110 1 0 1 0 0 Ribosome 1 0.500231644478908 1 0.999536711042184 hm5C_site_14163 DeepMRMD:1;iRNA_m5C:0.999536711042184 not specified not specified 14164 chr17 4926882 4926882 1 + A G rs346828 4926883 + 4926863 4926903 41 CAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAGCGG CAGCCCGGCCCCCCTCGCCGCCACTGTCAAGCTGGGAGCGG < 41bp 1 0.135569272328369 1 0.0492443740367889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926883 chr17:4926882 synonymous SNV . 0 20 hm5C_associated_SNPs_12111 1 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14164 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 14165 chr17 4927837 4927837 1 + T C rs143895411 4927822 + 4927802 4927842 41 AGAGTGAGGCAAGTTCTCCCCAGCCCCTGTCCGTCTGTCTG AGAGTGAGGCAAGTTCTCCCCAGCCCCTGTCCGTCCGTCTG < 41bp 1 0.252821305840143 1 0.305024206638336 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1C ENSG00000129250 UTR3 Human protein_coding chr17:4927822 chr17:4927837 . . 0 36 hm5C_associated_SNPs_12112 0 0 1 0 0 Ribosome 1 0.50023164392525 1 0.999536712149499 hm5C_site_14165 DeepMRMD:1;iRNA_m5C:0.999536712149499 14166 chr17 5029158 5029158 1 + C T rs578212292 5029155 + 5029135 5029175 41 ATCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAA ATCTCGGCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAA < 41bp 1 0.113071149019016 1 0.0466055870056152 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029155 chr17:5029158 . . 0 24 hm5C_associated_SNPs_12113 0 0 0 0 2 cytosol 1 0.500231695295261 1 0.999536609409477 hm5C_site_14166 DeepMRMD:1;iRNA_m5C:0.999536609409477 14167 chr17 5029158 5029158 1 + C T rs578212292 5029156 + 5029136 5029176 41 TCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAAT TCTCGGCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAAT < 41bp 1 0.213938920848024 1 0.391420364379883 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029156 chr17:5029158 . . 0 23 hm5C_associated_SNPs_12114 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14167 DeepMRMD:1;iRNA_m5C:0.999536712157815 14168 chr17 5029158 5029158 1 + C T rs578212292 5029159 + 5029139 5029179 41 CGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCT CGGCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAATTCT < 41bp 1 0.147230807603355 1 0.303456723690033 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029159 chr17:5029158 . . 0 20 hm5C_associated_SNPs_12115 0 0 0 0 2 cytosol 1 0.500411797804005 1 0.999176404391989 hm5C_site_14168 DeepMRMD:1;iRNA_m5C:0.999176404391989 14169 chr17 5029158 5029158 1 + C T rs578212292 5029161 + 5029141 5029181 41 GCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCTCC GCTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAATTCTCC < 41bp 1 0.325542505327722 1 0.574341118335724 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029161 chr17:5029158 . . 0 18 hm5C_associated_SNPs_12116 0 0 0 0 2 cytosol 1 0.50023164391882 0.851317763328552 0.99953671216236 hm5C_site_14169 DeepMRMD:0.851317763328552;iRNA_m5C:0.99953671216236 14170 chr17 5029158 5029158 1 + C T rs578212292 5029162 + 5029142 5029182 41 CTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCTCCT CTCTCTGCAACTTCCGTCTCCTGGGTTCAAGCAATTCTCCT < 41bp 1 0.491133404043509 1 0.421631157398224 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029162 chr17:5029158 . . 0 17 hm5C_associated_SNPs_12117 0 0 0 0 2 cytosol 1 0.500231698705417 1 0.999536602589166 hm5C_site_14170 DeepMRMD:1;iRNA_m5C:0.999536602589166 14171 chr17 5029172 5029172 1 + G A rs543618039 5029155 + 5029135 5029175 41 ATCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAA ATCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAA < 41bp 1 0.167303380054781 1 0.0726121366024017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029155 chr17:5029172 . . 0 38 hm5C_associated_SNPs_12118 0 0 0 0 2 cytosol 1 0.500231650011923 1 0.999536699976153 hm5C_site_14171 DeepMRMD:1;iRNA_m5C:0.999536699976153 14172 chr17 5029172 5029172 1 + G A rs543618039 5029156 + 5029136 5029176 41 TCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAAT TCTCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAAT < 41bp 1 0.330301856517018 1 0.766618609428406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029156 chr17:5029172 . . 0 37 hm5C_associated_SNPs_12119 0 0 0 0 2 cytosol 1 0.500231643921093 0.466762781143188 0.999536712157813 hm5C_site_14172 DeepMRMD:0.466762781143188;iRNA_m5C:0.999536712157813 14173 chr17 5029172 5029172 1 + G A rs543618039 5029158 + 5029138 5029178 41 TCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTC TCGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAATTC < 41bp 1 0.0621138170575974 1 0.111185073852539 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029158 chr17:5029172 . . 0 35 hm5C_associated_SNPs_12120 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14173 DeepMRMD:1;iRNA_m5C:0.999536712157815 14174 chr17 5029172 5029172 1 + G A rs543618039 5029159 + 5029139 5029179 41 CGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCT CGGCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAATTCT < 41bp 1 0.129768082054089 1 0.529189705848694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029159 chr17:5029172 . . 0 34 hm5C_associated_SNPs_12121 0 0 0 0 2 cytosol 1 0.500231643930392 0.941620588302612 0.999536712139216 hm5C_site_14174 DeepMRMD:0.941620588302612;iRNA_m5C:0.999536712139216 14175 chr17 5029172 5029172 1 + G A rs543618039 5029161 + 5029141 5029181 41 GCTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCTCC GCTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAATTCTCC < 41bp 1 0.272392924544397 1 0.628112375736237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029161 chr17:5029172 . . 0 32 hm5C_associated_SNPs_12122 0 0 0 0 2 cytosol 1 0.500231643833011 0.743775248527526 0.999536712333979 hm5C_site_14175 DeepMRMD:0.743775248527526;iRNA_m5C:0.999536712333979 14176 chr17 5029172 5029172 1 + G A rs543618039 5029162 + 5029142 5029182 41 CTCTCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCTCCT CTCTCTGCAACTTCCGCCTCCTGGGTTCAAACAATTCTCCT < 41bp 1 0.46656443890404 1 0.387858629226685 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029162 chr17:5029172 . . 0 31 hm5C_associated_SNPs_12123 0 0 0 0 2 cytosol 1 0.500231623442618 1 0.999536753114765 hm5C_site_14176 DeepMRMD:1;iRNA_m5C:0.999536753114765 14177 chr17 5029195 5029195 1 + C T rs141109562 5029194 + 5029174 5029214 41 AATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGG AATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGG < 41bp 1 0.330252877877452 1 0.357229828834534 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029194 chr17:5029195 . . 0 22 hm5C_associated_SNPs_12124 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14177 DeepMRMD:1;iRNA_m5C:0.999536712157815 14178 chr17 5029195 5029195 1 + C T rs141109562 5029202 + 5029182 5029222 41 TGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATGTGCC TGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCATGTGCC < 41bp 1 0.543844924822558 1 0.626575350761414 experiment 0.912310150354885 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP6 ENSG00000129204 UTR5 Human protein_coding chr17:5029202 chr17:5029195 . . 0 14 hm5C_associated_SNPs_12125 0 0 0 0 2 cytosol 1 0.500231643921092 0.746849298477172 0.999536712157816 hm5C_site_14178 DeepMRMD:0.746849298477172;iRNA_m5C:0.999536712157816 14179 chr17 5286761 5286761 1 + G A rs563022596 5286768 + 5286748 5286788 41 GATTCCAACAGGCGTGGGATCAGATTTGGTGATGGAAAAAG GATTCCAACAGGCATGGGATCAGATTTGGTGATGGAAAAAG < 41bp 1 0.589328319394199 1 0.397311449050903 experiment 0.821343361211603 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RABEP1 ENSG00000029725 UTR3 Human protein_coding chr17:5286768 chr17:5286761 . . 0 14 hm5C_associated_SNPs_12126 0 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14179 DeepMRMD:1;iRNA_m5C:0.999536712157815 14180 chr17 5286844 5286844 1 + C T rs188091510 5286857 + 5286837 5286877 41 TCCCTACCCTAAAGCGACATCCCAGTAGTGTTTGGAATTTT TCCCTACTCTAAAGCGACATCCCAGTAGTGTTTGGAATTTT < 41bp 1 0.202653721879811 1 0.0796626806259155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RABEP1 ENSG00000029725 UTR3 Human protein_coding chr17:5286857 chr17:5286844 . . 0 8 hm5C_associated_SNPs_12127 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14180 DeepMRMD:1;iRNA_m5C:0.999536712157815 14181 chr17 5322985 5322985 1 + T C rs567637920 5322983 - 5322963 5323003 41 AGCAACTGGAGTGAGGGGAGCAGTTGGGCCAAGATGGCGGC AGCAACTGGAGTGAGGGGGGCAGTTGGGCCAAGATGGCGGC < 41bp 1 0.567801009961514 1 0.570476174354553 experiment 0.864397980076973 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP88;RPAIN ENSG00000108559;ENSG00000129197 UTR5 Human other chr17:5322983 chr17:5322985 . . 0 19 hm5C_associated_SNPs_12128 0 0 0 0 0 unknown 1 0.500231643921092 0.859047651290894 0.999536712157815 hm5C_site_14181 DeepMRMD:0.859047651290894;iRNA_m5C:0.999536712157815 14182 chr17 5333380 5333380 1 + C T rs8079643 5333362 + 5333342 5333382 41 GCTGGACATGGTGGTGGGTGCCTGTAATCTCAGCTACTCGG GCTGGACATGGTGGTGGGTGCCTGTAATCTCAGCTACTTGG < 41bp 1 0.123277560594968 1 0.0618579089641571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPAIN ENSG00000263272 ncRNA_intronic Human antisense chr17:5333362 chr17:5333380 . . 0 39 hm5C_associated_SNPs_12129 0 0 0 0 0 Ribosome 1 0.500231643941622 1 0.999536712116755 hm5C_site_14182 DeepMRMD:1;iRNA_m5C:0.999536712116755 14183 chr17 5333380 5333380 1 + C T rs8079643 5333363 + 5333343 5333383 41 CTGGACATGGTGGTGGGTGCCTGTAATCTCAGCTACTCGGG CTGGACATGGTGGTGGGTGCCTGTAATCTCAGCTACTTGGG < 41bp 1 0.54454246808655 1 0.577323198318481 experiment 0.9109150638269 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPAIN ENSG00000263272 ncRNA_intronic Human antisense chr17:5333363 chr17:5333380 . . 0 38 hm5C_associated_SNPs_12130 0 0 0 0 0 Ribosome 1 0.500231842512062 0.845353603363038 0.999536314975876 hm5C_site_14183 DeepMRMD:0.845353603363038;iRNA_m5C:0.999536314975876 14184 chr17 5333380 5333380 1 + C T rs8079643 5333370 + 5333350 5333390 41 TGGTGGTGGGTGCCTGTAATCTCAGCTACTCGGGAGGCTGG TGGTGGTGGGTGCCTGTAATCTCAGCTACTTGGGAGGCTGG < 41bp 1 0.551931410941699 1 0.421917110681534 experiment 0.896137178116601 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPAIN ENSG00000263272 ncRNA_intronic Human antisense chr17:5333370 chr17:5333380 . . 0 31 hm5C_associated_SNPs_12131 0 0 0 0 0 Ribosome 1 0.500231643921082 1 0.999536712157836 hm5C_site_14184 DeepMRMD:1;iRNA_m5C:0.999536712157836 14185 chr17 5333380 5333380 1 + C T rs8079643 5333372 + 5333352 5333392 41 GTGGTGGGTGCCTGTAATCTCAGCTACTCGGGAGGCTGGGG GTGGTGGGTGCCTGTAATCTCAGCTACTTGGGAGGCTGGGG < 41bp 1 0.493939659353551 1 0.855423867702484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPAIN ENSG00000263272 ncRNA_intronic Human antisense chr17:5333372 chr17:5333380 . . 0 29 hm5C_associated_SNPs_12132 0 0 0 0 0 Ribosome 1 0.500231643921092 0.289152264595032 0.999536712157815 hm5C_site_14185 DeepMRMD:0.289152264595032;iRNA_m5C:0.999536712157815 14186 chr17 5333380 5333380 1 + C T rs8079643 5333375 + 5333355 5333395 41 GTGGGTGCCTGTAATCTCAGCTACTCGGGAGGCTGGGGCAG GTGGGTGCCTGTAATCTCAGCTACTTGGGAGGCTGGGGCAG < 41bp 1 0.262302605871153 1 0.363933563232422 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPAIN ENSG00000263272 ncRNA_intronic Human antisense chr17:5333375 chr17:5333380 . . 0 26 hm5C_associated_SNPs_12133 0 0 0 0 0 Ribosome 1 0.500231443094234 1 0.999537113811533 hm5C_site_14186 DeepMRMD:1;iRNA_m5C:0.999537113811533 14187 chr17 5333380 5333380 1 + C T rs8079643 5333378 + 5333358 5333398 41 GGTGCCTGTAATCTCAGCTACTCGGGAGGCTGGGGCAGGAG GGTGCCTGTAATCTCAGCTACTTGGGAGGCTGGGGCAGGAG < 41bp 1 0.44294175670838 1 0.249488681554794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPAIN ENSG00000263272 ncRNA_intronic Human antisense chr17:5333378 chr17:5333380 . . 0 23 hm5C_associated_SNPs_12134 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14187 DeepMRMD:1;iRNA_m5C:0.999536712157815 14188 chr17 5393007 5393007 1 + G C rs74582818 5393027 + 5393007 5393047 41 GGCTGAAGCATCTGAGTCTTCTAATAAGTGGGAAGGGATCC CGCTGAAGCATCTGAGTCTTCTAATAAGTGGGAAGGGATCC < 41bp 1 0.523951844821756 1 0.0904748439788818 experiment 0.952096310356487 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MIS12 ENSG00000167842 UTR3 Human protein_coding chr17:5393027 chr17:5393007 . . 0 1 hm5C_associated_SNPs_12135 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14188 DeepMRMD:1;iRNA_m5C:0.999536712157815 14189 chr17 5984226 5984226 1 + T C rs200320901 5984212 + 5984192 5984232 41 CTGCACGACCCTCGAGTCAGCCCAGAGCTGCTGCTGGGTGT CTGCACGACCCTCGAGTCAGCCCAGAGCTGCTGCCGGGTGT < 41bp 1 0.36272988241103 1 0.155790150165558 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control WSCD1 ENSG00000179314 CDS Human protein_coding chr17:5984212 chr17:5984226 nonsynonymous SNV 0.035 3 35 hm5C_associated_SNPs_12136 0 0 0 0 0 exosome 1 0.500231643919876 1 0.999536712160249 hm5C_site_14189 DeepMRMD:1;iRNA_m5C:0.999536712160249 14190 chr17 6012979 6012979 1 + C A rs41314099 6012962 + 6012942 6012982 41 ATTCTCAGGGGCTGGGAATGCTACTGTGCTTACCCTACCCC ATTCTCAGGGGCTGGGAATGCTACTGTGCTTACCCTAACCC < 41bp 1 0.617354673738914 1 0.304381668567657 experiment 0.765290652522172 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6012962 chr17:6012979 nonsynonymous SNV 0.994 4 38 hm5C_associated_SNPs_12137 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14190 DeepMRMD:1;iRNA_m5C:0.999536712157815 14191 chr17 6347784 6347784 1 + C A rs113798672 6347770 + 6347750 6347790 41 CGGCTGCGGTGGGCGAGGAGCAGCTGTGCTGCGGCTGTGCT CGGCTGCGGTGGGCGAGGAGCAGCTGTGCTGCGGATGTGCT < 41bp 1 0.632907173448141 1 0.739773631095886 experiment 0.734185653103718 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIMREG ENSG00000129195 UTR5 Human protein_coding chr17:6347770 chr17:6347784 . . 0 35 hm5C_associated_SNPs_12138 0 0 1 0 1 unknown 1 0.500231646060639 0.520452737808228 0.999536707878723 hm5C_site_14191 DeepMRMD:0.520452737808228;iRNA_m5C:0.999536707878723 14192 chr17 7163137 7163137 1 + G A rs548498221 7163120 + 7163100 7163140 41 CCTGCCCCACCTTGGTTCCCCTTGTCTATGGAGCCCCGCCT CCTGCCCCACCTTGGTTCCCCTTGTCTATGGAGCCCCACCT < 41bp 1 0.486160043496102 1 0.0245595574378967 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ELP5 ENSG00000170291 UTR3 Human protein_coding chr17:7163120 chr17:7163137 . . 0 38 hm5C_associated_SNPs_12141 0 0 1 1 0 Cytosol 1 0.500231641802832 1 0.999536716394336 hm5C_site_14192 DeepMRMD:1;iRNA_m5C:0.999536716394336 14193 chr17 7215385 7215385 1 + C T rs185404236 7215370 + 7215350 7215390 41 TGAAGCTGCCCTCCTCTTCTCCCCTCACACTACAGCCCTGG TGAAGCTGCCCTCCTCTTCTCCCCTCACACTACAGTCCTGG < 41bp 1 0.230977063463142 1 0.0636996328830719 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 UTR3 Human protein_coding chr17:7215370 chr17:7215385 . . 0 36 hm5C_associated_SNPs_12142 0 0 1 0 0 Ribosome 1 0.500231632715418 1 0.999536734569164 hm5C_site_14193 DeepMRMD:1;iRNA_m5C:0.999536734569164 14194 chr17 7215385 7215385 1 + C T rs185404236 7215371 + 7215351 7215391 41 GAAGCTGCCCTCCTCTTCTCCCCTCACACTACAGCCCTGGT GAAGCTGCCCTCCTCTTCTCCCCTCACACTACAGTCCTGGT < 41bp 1 0.055727560442809 1 0.0747706592082977 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 UTR3 Human protein_coding chr17:7215371 chr17:7215385 . . 0 35 hm5C_associated_SNPs_12143 0 0 1 0 0 Ribosome 1 0.500231643843895 1 0.999536712312209 hm5C_site_14194 DeepMRMD:1;iRNA_m5C:0.999536712312209 14195 chr17 7215385 7215385 1 + C T rs185404236 7215372 + 7215352 7215392 41 AAGCTGCCCTCCTCTTCTCCCCTCACACTACAGCCCTGGTG AAGCTGCCCTCCTCTTCTCCCCTCACACTACAGTCCTGGTG < 41bp 1 0.257553078274733 1 0.0819210708141327 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 UTR3 Human protein_coding chr17:7215372 chr17:7215385 . . 0 34 hm5C_associated_SNPs_12144 0 0 1 0 0 Ribosome 1 0.500231643133546 1 0.999536713732908 hm5C_site_14195 DeepMRMD:1;iRNA_m5C:0.999536713732908 14196 chr17 7215385 7215385 1 + C T rs185404236 7215373 + 7215353 7215393 41 AGCTGCCCTCCTCTTCTCCCCTCACACTACAGCCCTGGTGG AGCTGCCCTCCTCTTCTCCCCTCACACTACAGTCCTGGTGG < 41bp 1 0.272692350073505 1 0.634450137615204 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 UTR3 Human protein_coding chr17:7215373 chr17:7215385 . . 0 33 hm5C_associated_SNPs_12145 0 0 1 0 0 Ribosome 1 0.50023164386428 0.731099724769592 0.99953671227144 hm5C_site_14196 DeepMRMD:0.731099724769592;iRNA_m5C:0.99953671227144 14197 chr17 7254315 7254315 1 + G A rs35985803 7254301 + 7254281 7254321 41 AAAGATGAGGGAGGCTGAAGCGGCCCAGGGGCAGGCAGGTA AAAGATGAGGGAGGCTGAAGCGGCCCAGGGGCAGACAGGTA < 41bp 1 0.50828377763626 1 0.671846926212311 experiment 0.983432444727481 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7254301 chr17:7254315 nonsynonymous SNV 0.997 0 35 hm5C_associated_SNPs_12146 0 0 0 0 2 nucleus 1 0.50023164392056 0.656306147575378 0.99953671215888 hm5C_site_14197 DeepMRMD:0.656306147575378;iRNA_m5C:0.99953671215888 14198 chr17 7338977 7338977 1 + C T rs371158050 7338984 + 7338964 7339004 41 CAGTTCATGGGGGCGGGGACCTGCCTATGAGAAAAGGGCCA CAGTTCATGGGGGTGGGGACCTGCCTATGAGAAAAGGGCCA < 41bp 1 0.293231882342709 1 0.144939631223679 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM102 ENSG00000262880 ncRNA_intronic Human processed_transcript chr17:7338984 chr17:7338977 . . 0 14 hm5C_associated_SNPs_12147 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14198 DeepMRMD:1;iRNA_m5C:0.999536712157815 14199 chr17 7402672 7402672 1 + G A rs139080732 7402691 + 7402671 7402711 41 CGCGAGCAGAGATCCAGGAGCTGGCCATGGTTCCTCGCATG CACGAGCAGAGATCCAGGAGCTGGCCATGGTTCCTCGCATG < 41bp 1 0.382679301007915 1 0.651486992835999 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7402691 chr17:7402672 synonymous SNV . 0 2 hm5C_associated_SNPs_12148 0 0 1 0 0 Nucleus 1 0.500231613273465 0.697026014328002 0.999536773453071 hm5C_site_14199 DeepMRMD:0.697026014328002;iRNA_m5C:0.999536773453071 14200 chr17 7460957 7460957 1 + G T rs9907657 7460945 + 7460925 7460965 41 TCTCGACTCCCCCCTGGCCACAGACCCCCAGGGCATTGTGT TCTCGACTCCCCCCTGGCCACAGACCCCCAGGTCATTGTGT < 41bp 1 0.163890939445497 1 0.11055925488472 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFSF12 ENSG00000239697 UTR3 Human protein_coding chr17:7460945 chr17:7460957 . . 0 33 hm5C_associated_SNPs_12149 0 0 0 2 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14200 DeepMRMD:1;iRNA_m5C:0.999536712157815 14201 chr17 7463197 7463197 1 + C G rs138604224 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAAGGCCACC < 41bp 1 0.395263210855784 1 0.237437576055527 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463197 nonsynonymous SNV 0.967 2 35 hm5C_associated_SNPs_12150 0 0 0 0 3 unknown 1 0.500231643921069 1 0.999536712157862 hm5C_site_14201 DeepMRMD:1;iRNA_m5C:0.999536712157862 14202 chr17 7477935 7477935 1 + C T rs141818062 7477921 + 7477901 7477941 41 TGAACCTCTCGGAGTCCCTTCTCCGTGGCATCTACGCGTAT TGAACCTCTCGGAGTCCCTTCTCCGTGGCATCTATGCGTAT < 41bp 1 0.490606488516484 1 0.959011197090149 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7477921 chr17:7477935 synonymous SNV . 0 35 hm5C_associated_SNPs_12152 0 0 1 0 0 Cytosol 1 0.500231643921093 0.0819776058197019 0.999536712157815 hm5C_site_14202 DeepMRMD:0.0819776058197019;iRNA_m5C:0.999536712157815 14203 chr17 7477938 7477938 1 + G A rs1057086 7477921 + 7477901 7477941 41 TGAACCTCTCGGAGTCCCTTCTCCGTGGCATCTACGCGTAT TGAACCTCTCGGAGTCCCTTCTCCGTGGCATCTACGCATAT < 41bp 1 0.500220192206849 1 0.930318117141724 experiment 0.999559615586303 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7477921 chr17:7477938 synonymous SNV . 0 38 hm5C_associated_SNPs_12153 0 0 1 0 0 Cytosol 1 0.500231643921596 0.139363765716552 0.999536712156807 hm5C_site_14203 DeepMRMD:0.139363765716552;iRNA_m5C:0.999536712156807 14204 chr17 7478498 7478498 1 + G A rs7358 7478497 + 7478477 7478517 41 AACGGCCACATTTGCCATATCGATTCTGCAGCAGATTGAAT AACGGCCACATTTGCCATATCAATTCTGCAGCAGATTGAAT < 41bp 1 0.077942211616954 1 0.121469557285309 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7478497 chr17:7478498 synonymous SNV . 0 22 hm5C_associated_SNPs_12154 0 0 1 0 2 Cytosol 1 0.500229745701556 1 0.999540508596887 hm5C_site_14204 DeepMRMD:1;iRNA_m5C:0.999540508596887 14205 chr17 7479892 7479892 1 + C T rs11078698 7479886 + 7479866 7479906 41 GGAGACTACATGGGCGCCTCCTGTCACGCCTGTATCGGGGG GGAGACTACATGGGCGCCTCCTGTCATGCCTGTATCGGGGG < 41bp 1 0.230524458858828 1 0.364945232868195 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479886 chr17:7479892 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_12155 0 0 1 0 1 Cytosol 1 0.500231643920401 1 0.999536712159198 hm5C_site_14205 DeepMRMD:1;iRNA_m5C:0.999536712159198 14206 chr17 7479892 7479892 1 + C T rs11078698 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ATGGGCGCCTCCTGTCATGCCTGTATCGGGGGCACCAACGT < 41bp 1 0.647387145748961 1 0.243674218654633 experiment 0.705225708502077 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479892 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_12156 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_14206 DeepMRMD:1;iRNA_m5C:0.999536712157816 14207 chr17 7479892 7479892 1 + C T rs11078698 7479907 + 7479887 7479927 41 TGTCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT TGTCATGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT < 41bp 1 0.54097175086047 1 0.2534299492836 experiment 0.91805649827906 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479907 chr17:7479892 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_12157 0 0 1 0 1 Cytosol 1 0.50023164042993 1 0.999536719140141 hm5C_site_14207 DeepMRMD:1;iRNA_m5C:0.999536719140141 14208 chr17 7479892 7479892 1 + C T rs11078698 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCATGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC < 41bp 1 0.125089241628519 1 0.154397666454315 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479892 nonsynonymous SNV . 0 4 hm5C_associated_SNPs_12158 0 0 1 0 1 Cytosol 1 0.500231663257669 1 0.999536673484662 hm5C_site_14208 DeepMRMD:1;iRNA_m5C:0.999536673484662 14209 chr17 7479892 7479892 1 + C T rs11078698 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CATGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA < 41bp 1 0.474531932660383 1 0.294010400772095 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479892 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_12159 0 0 1 0 1 Cytosol 1 0.500231643921507 1 0.999536712156985 hm5C_site_14209 DeepMRMD:1;iRNA_m5C:0.999536712156985 14210 chr17 7479901 7479901 1 + C A rs550885428 7479886 + 7479866 7479906 41 GGAGACTACATGGGCGCCTCCTGTCACGCCTGTATCGGGGG GGAGACTACATGGGCGCCTCCTGTCACGCCTGTATAGGGGG < 41bp 1 0.153109004554392 1 0.353808522224426 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479886 chr17:7479901 synonymous SNV . 0 36 hm5C_associated_SNPs_12160 0 0 1 0 1 Cytosol 1 0.500231643924049 1 0.999536712151901 hm5C_site_14210 DeepMRMD:1;iRNA_m5C:0.999536712151901 14211 chr17 7479901 7479901 1 + C A rs550885428 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACATGGGCGCCTCCTGTCACGCCTGTATAGGGGGCACCAA < 41bp 1 0.66355302977867 1 0.0794467329978943 experiment 0.67289394044266 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479901 synonymous SNV . 0 30 hm5C_associated_SNPs_12161 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14211 DeepMRMD:1;iRNA_m5C:0.999536712157815 14212 chr17 7479901 7479901 1 + C A rs550885428 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ATGGGCGCCTCCTGTCACGCCTGTATAGGGGGCACCAACGT < 41bp 1 0.583506005264586 1 0.538746118545532 experiment 0.832987989470829 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479901 synonymous SNV . 0 27 hm5C_associated_SNPs_12162 0 0 1 0 1 Cytosol 1 0.500231643962217 0.922507762908936 0.999536712075566 hm5C_site_14212 DeepMRMD:0.922507762908936;iRNA_m5C:0.999536712075566 14213 chr17 7479901 7479901 1 + C A rs550885428 7479907 + 7479887 7479927 41 TGTCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT TGTCACGCCTGTATAGGGGGCACCAACGTGCGTGCTGAGGT < 41bp 1 0.51092468075184 1 0.137567311525345 experiment 0.978150638496319 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479907 chr17:7479901 synonymous SNV . 0 15 hm5C_associated_SNPs_12163 0 0 1 0 1 Cytosol 1 0.500231657699195 1 0.999536684601609 hm5C_site_14213 DeepMRMD:1;iRNA_m5C:0.999536684601609 14214 chr17 7479901 7479901 1 + C A rs550885428 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATAGGGGGCACCAACGTGCGTGCTGAGGTGC < 41bp 1 0.10839848606202 1 0.171687066555023 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479901 synonymous SNV . 0 13 hm5C_associated_SNPs_12164 0 0 1 0 1 Cytosol 1 0.500196479255755 1 0.999607041488489 hm5C_site_14214 DeepMRMD:1;iRNA_m5C:0.999607041488489 14215 chr17 7479901 7479901 1 + C A rs550885428 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATAGGGGGCACCAACGTGCGTGCTGAGGTGCA < 41bp 1 0.401616295212454 1 0.175630241632462 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479901 synonymous SNV . 0 12 hm5C_associated_SNPs_12165 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14215 DeepMRMD:1;iRNA_m5C:0.999536712157815 14216 chr17 7480000 7480000 1 + G A rs61730297 7480007 + 7479987 7480027 41 ATATGCTTAACCGGAGATACCTGTGTGAGTAATTCGGTTCT ATATGCTTAACCGAAGATACCTGTGTGAGTAATTCGGTTCT < 41bp 1 0.42287279058511 1 0.0482604205608368 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7480007 chr17:7480000 synonymous SNV . 0 14 hm5C_associated_SNPs_12166 0 0 1 0 1 Cytosol 1 0.500231643921069 1 0.999536712157863 hm5C_site_14216 DeepMRMD:1;iRNA_m5C:0.999536712157863 14217 chr17 7480240 7480240 1 + G A rs147550900 7480223 + 7480203 7480243 41 TTCCCAGGGCTGTTGTCTGCCTGGCGGGAAGGTCCTGGGCA TTCCCAGGGCTGTTGTCTGCCTGGCGGGAAGGTCCTGAGCA < 41bp 1 0.554881950043171 1 0.600936055183411 experiment 0.890236099913657 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD10 ENSG00000238917 ncRNA_exonic Human snoRNA chr17:7480223 chr17:7480240 . . 0 38 hm5C_associated_SNPs_12167 0 0 1 0 0 unknown 1 0.500231643921091 0.798127889633178 0.999536712157818 hm5C_site_14217 DeepMRMD:0.798127889633178;iRNA_m5C:0.999536712157818 14218 chr17 7480240 7480240 1 + G A rs147550900 7480227 + 7480207 7480247 41 CAGGGCTGTTGTCTGCCTGGCGGGAAGGTCCTGGGCAAAGG CAGGGCTGTTGTCTGCCTGGCGGGAAGGTCCTGAGCAAAGG < 41bp 1 0.634764316226817 1 0.720837116241455 experiment 0.730471367546366 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD10 ENSG00000238917 ncRNA_exonic Human snoRNA chr17:7480227 chr17:7480240 . . 0 34 hm5C_associated_SNPs_12168 0 0 1 0 0 unknown 1 0.500231643921092 0.55832576751709 0.999536712157815 hm5C_site_14218 DeepMRMD:0.55832576751709;iRNA_m5C:0.999536712157815 14219 chr17 7480240 7480240 1 + G A rs147550900 7480236 + 7480216 7480256 41 TGTCTGCCTGGCGGGAAGGTCCTGGGCAAAGGATCAGTCTT TGTCTGCCTGGCGGGAAGGTCCTGAGCAAAGGATCAGTCTT < 41bp 1 0.304524396233758 1 0.0647019445896149 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD10 ENSG00000238917 ncRNA_exonic Human snoRNA chr17:7480236 chr17:7480240 . . 0 25 hm5C_associated_SNPs_12169 0 0 1 0 0 unknown 1 0.500231624611439 1 0.999536750777121 hm5C_site_14219 DeepMRMD:1;iRNA_m5C:0.999536750777121 14220 chr17 7480240 7480240 1 + G A rs147550900 7480242 + 7480222 7480262 41 CCTGGCGGGAAGGTCCTGGGCAAAGGATCAGTCTTTGTACT CCTGGCGGGAAGGTCCTGAGCAAAGGATCAGTCTTTGTACT < 41bp 1 0.476702745419391 1 0.581599652767181 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD10 ENSG00000238917 ncRNA_exonic Human snoRNA chr17:7480242 chr17:7480240 . . 0 19 hm5C_associated_SNPs_12170 0 0 1 0 0 unknown 1 0.500231643928639 0.836800694465638 0.999536712142722 hm5C_site_14220 DeepMRMD:0.836800694465638;iRNA_m5C:0.999536712142722 14221 chr17 7480240 7480240 1 + G A rs147550900 7480250 + 7480230 7480270 41 GAAGGTCCTGGGCAAAGGATCAGTCTTTGTACTCTGAGAGC GAAGGTCCTGAGCAAAGGATCAGTCTTTGTACTCTGAGAGC < 41bp 1 0.113547553059406 1 0.259239792823792 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD10 ENSG00000238917 ncRNA_exonic Human snoRNA chr17:7480250 chr17:7480240 . . 0 11 hm5C_associated_SNPs_12171 0 0 1 0 0 unknown 1 0.500231644221911 1 0.999536711556177 hm5C_site_14221 DeepMRMD:1;iRNA_m5C:0.999536711556177 14222 chr17 7480240 7480240 1 + G A rs147550900 7480254 + 7480234 7480274 41 GTCCTGGGCAAAGGATCAGTCTTTGTACTCTGAGAGCAGAC GTCCTGAGCAAAGGATCAGTCTTTGTACTCTGAGAGCAGAC < 41bp 1 0.124205187384001 1 0.150315135717392 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD10 ENSG00000238917 ncRNA_exonic Human snoRNA chr17:7480254 chr17:7480240 . . 0 7 hm5C_associated_SNPs_12172 0 0 1 0 0 unknown 1 0.500231633715241 1 0.999536732569519 hm5C_site_14222 DeepMRMD:1;iRNA_m5C:0.999536732569519 14223 chr17 7480255 7480255 1 + T C rs75736809 7480236 + 7480216 7480256 41 TGTCTGCCTGGCGGGAAGGTCCTGGGCAAAGGATCAGTCTT TGTCTGCCTGGCGGGAAGGTCCTGGGCAAAGGATCAGTCCT < 41bp 1 0.226846855024532 1 0.178475439548492 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD10 ENSG00000238917 ncRNA_exonic Human snoRNA chr17:7480236 chr17:7480255 . . 0 40 hm5C_associated_SNPs_12173 0 0 1 0 0 unknown 1 0.500231741532065 1 0.999536516935871 hm5C_site_14223 DeepMRMD:1;iRNA_m5C:0.999536516935871 14224 chr17 7480255 7480255 1 + T C rs75736809 7480242 + 7480222 7480262 41 CCTGGCGGGAAGGTCCTGGGCAAAGGATCAGTCTTTGTACT CCTGGCGGGAAGGTCCTGGGCAAAGGATCAGTCCTTGTACT < 41bp 1 0.421199356780731 1 0.644372582435608 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD10 ENSG00000238917 ncRNA_exonic Human snoRNA chr17:7480242 chr17:7480255 . . 0 34 hm5C_associated_SNPs_12174 0 0 1 0 0 unknown 1 0.500231643902869 0.711254835128784 0.999536712194261 hm5C_site_14224 DeepMRMD:0.711254835128784;iRNA_m5C:0.999536712194261 14225 chr17 7480255 7480255 1 + T C rs75736809 7480250 + 7480230 7480270 41 GAAGGTCCTGGGCAAAGGATCAGTCTTTGTACTCTGAGAGC GAAGGTCCTGGGCAAAGGATCAGTCCTTGTACTCTGAGAGC < 41bp 1 0.101327423824197 1 0.545142590999603 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD10 ENSG00000238917 ncRNA_exonic Human snoRNA chr17:7480250 chr17:7480255 . . 0 26 hm5C_associated_SNPs_12175 0 0 1 0 0 unknown 1 0.500231651958174 0.909714818000794 0.999536696083651 hm5C_site_14225 DeepMRMD:0.909714818000794;iRNA_m5C:0.999536696083651 14226 chr17 7480255 7480255 1 + T C rs75736809 7480254 + 7480234 7480274 41 GTCCTGGGCAAAGGATCAGTCTTTGTACTCTGAGAGCAGAC GTCCTGGGCAAAGGATCAGTCCTTGTACTCTGAGAGCAGAC < 41bp 1 0.0492332819499449 1 0.0726527869701385 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD10 ENSG00000238917 ncRNA_exonic Human snoRNA chr17:7480254 chr17:7480255 . . 0 22 hm5C_associated_SNPs_12176 0 0 1 0 0 unknown 1 0.500231132537043 1 0.999537734925914 hm5C_site_14226 DeepMRMD:1;iRNA_m5C:0.999537734925914 14227 chr17 7480255 7480255 1 + T C rs75736809 7480261 + 7480241 7480281 41 GCAAAGGATCAGTCTTTGTACTCTGAGAGCAGACTACTTGG GCAAAGGATCAGTCCTTGTACTCTGAGAGCAGACTACTTGG < 41bp 1 0.285378979575805 1 0.0774204432964325 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD10 ENSG00000238917 ncRNA_exonic Human snoRNA chr17:7480261 chr17:7480255 . . 0 15 hm5C_associated_SNPs_12177 0 0 1 0 0 unknown 1 0.500231643460253 1 0.999536713079494 hm5C_site_14227 DeepMRMD:1;iRNA_m5C:0.999536713079494 14228 chr17 7480255 7480255 1 + T C rs75736809 7480263 + 7480243 7480283 41 AAAGGATCAGTCTTTGTACTCTGAGAGCAGACTACTTGGCT AAAGGATCAGTCCTTGTACTCTGAGAGCAGACTACTTGGCT < 41bp 1 0.369768207208398 1 0.789961338043213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD10 ENSG00000238917 ncRNA_exonic Human snoRNA chr17:7480263 chr17:7480255 . . 0 13 hm5C_associated_SNPs_12178 0 0 1 0 0 unknown 1 0.500231639840601 0.420077323913574 0.999536720318798 hm5C_site_14228 DeepMRMD:0.420077323913574;iRNA_m5C:0.999536720318798 14229 chr17 7480255 7480255 1 + T C rs75736809 7480270 + 7480250 7480290 41 CAGTCTTTGTACTCTGAGAGCAGACTACTTGGCTCCTCTCT CAGTCCTTGTACTCTGAGAGCAGACTACTTGGCTCCTCTCT < 41bp 1 0.135669092060846 1 0.520616292953491 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD10 ENSG00000238917 ncRNA_exonic Human snoRNA chr17:7480270 chr17:7480255 . . 0 6 hm5C_associated_SNPs_12179 0 0 1 0 0 unknown 1 0.500231643302379 0.958767414093018 0.999536713395243 hm5C_site_14229 DeepMRMD:0.958767414093018;iRNA_m5C:0.999536713395243 14230 chr17 7484049 7484049 1 + C T rs566165376 7484032 + 7484012 7484052 41 TCCTCTTCGCCCCACAGGACCTCCAGCAGAAGGTTGTCTAC TCCTCTTCGCCCCACAGGACCTCCAGCAGAAGGTTGTTTAC < 41bp 1 0.674737148683402 1 0.839459598064423 experiment 0.650525702633197 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD68 ENSG00000129226 CDS Human protein_coding chr17:7484032 chr17:7484049 synonymous SNV . 0 38 hm5C_associated_SNPs_12180 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 0.321080803871154 0.999536712157815 hm5C_site_14230 DeepMRMD:0.321080803871154;iRNA_m5C:0.999536712157815 14231 chr17 7592168 7592168 1 + C G rs2287499 7592180 + 7592160 7592200 41 AGGAGCTACGGGAGGGGGACCCAGTTTCTCTCTCCACTCCC AGGAGCTAGGGGAGGGGGACCCAGTTTCTCTCTCCACTCCC < 41bp 1 0.450965750276779 1 0.426975667476654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7592180 chr17:7592168 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_12182 3 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14231 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 14232 chr17 7750232 7750232 1 + T C rs11078709 7750213 + 7750193 7750233 41 ACCACCACCACCACCACCACCACCCCTGCCTGGCCTGGCTA ACCACCACCACCACCACCACCACCCCTGCCTGGCCTGGCCA < 41bp 1 0.105498686533477 1 0.39609768986702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750213 chr17:7750232 synonymous SNV . 0 40 hm5C_associated_SNPs_12184 0 0 1 0 1 Cytosol 1 0.500231643921148 1 0.999536712157704 hm5C_site_14232 DeepMRMD:1;iRNA_m5C:0.999536712157704 14233 chr17 7750232 7750232 1 + T C rs11078709 7750235 + 7750215 7750255 41 CCCCTGCCTGGCCTGGCTACCAGCCCCCCATTTCAGCTAAC CCCCTGCCTGGCCTGGCCACCAGCCCCCCATTTCAGCTAAC < 41bp 1 0.13993992360774 1 0.792651772499084 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750235 chr17:7750232 synonymous SNV . 0 18 hm5C_associated_SNPs_12185 0 0 1 0 1 Cytosol 1 0.500231643910931 0.414696455001832 0.999536712178137 hm5C_site_14233 DeepMRMD:0.414696455001832;iRNA_m5C:0.999536712178137 14234 chr17 7752292 7752292 1 + A C rs550441011 7752281 + 7752261 7752301 41 CGAAGAGCCAGTCCCGGGCCCCATGACCCCCACCCAACCGC CGAAGAGCCAGTCCCGGGCCCCATGACCCCCCCCCAACCGC < 41bp 1 0.0946995821822633 1 0.0892707109451294 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7752281 chr17:7752292 nonsynonymous SNV 0.256 1 32 hm5C_associated_SNPs_12186 0 0 0 0 0 Cytosol 1 0.500231643926945 1 0.999536712146109 hm5C_site_14234 DeepMRMD:1;iRNA_m5C:0.999536712146109 14235 chr17 7810512 7810512 1 + C G rs139484082 7810504 + 7810484 7810524 41 ACCTCTTGAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGC ACCTCTTGAGAAGGAGGAAGCTGAAAACGAGGAGGAAAAGC < 41bp 1 0.502828976921896 1 0.556456387042999 experiment 0.994342046156208 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810504 chr17:7810512 nonsynonymous SNV 0.910 1 29 hm5C_associated_SNPs_12187 0 0 1 0 2 Cytosol 1 0.500231643921107 0.887087225914002 0.999536712157785 hm5C_site_14235 DeepMRMD:0.887087225914002;iRNA_m5C:0.999536712157785 14236 chr17 7810512 7810512 1 + C G rs139484082 7810524 + 7810504 7810544 41 CTGAAAACCAGGAGGAAAAGCCAGAGAAGAACAGCAGAATT CTGAAAACGAGGAGGAAAAGCCAGAGAAGAACAGCAGAATT < 41bp 1 0.544301378798104 1 0.645491898059845 experiment 0.911397242403792 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810524 chr17:7810512 nonsynonymous SNV 0.910 1 9 hm5C_associated_SNPs_12189 0 0 1 0 2 Cytosol 1 0.500231636283718 0.70901620388031 0.999536727432565 hm5C_site_14236 DeepMRMD:0.70901620388031;iRNA_m5C:0.999536727432565 14237 chr17 7810512 7810512 1 + C G rs139484082 7810525 + 7810505 7810545 41 TGAAAACCAGGAGGAAAAGCCAGAGAAGAACAGCAGAATTG TGAAAACGAGGAGGAAAAGCCAGAGAAGAACAGCAGAATTG < 41bp 1 0.50119370178156 1 0.745246887207031 experiment 0.99761259643688 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810525 chr17:7810512 nonsynonymous SNV 0.910 1 8 hm5C_associated_SNPs_12190 0 0 1 0 2 Cytosol 1 0.500231644281874 0.509506225585938 0.999536711436253 hm5C_site_14237 DeepMRMD:0.509506225585938;iRNA_m5C:0.999536711436253 14238 chr17 7838371 7838371 1 + C G rs144838552 7838362 + 7838342 7838382 41 CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC CAGCCCAAGCCCTGGAGGAGCTGTTTCCCGGCTACACCAGC < 41bp 1 0.195829139953032 1 0.10207998752594 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7838362 chr17:7838371 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_12191 0 0 1 0 2 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_14238 DeepMRMD:1;iRNA_m5C:0.999536712157812 14239 chr17 7838372 7838372 1 + G A rs535452353 7838362 + 7838342 7838382 41 CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCACTACACCAGC < 41bp 1 0.227753852307055 1 0.155037343502045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7838362 chr17:7838372 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_12192 0 0 1 0 2 Nucleus 1 0.500231641291024 1 0.999536717417951 hm5C_site_14239 DeepMRMD:1;iRNA_m5C:0.999536717417951 14240 chr17 8022492 8022492 1 + T C rs118079291 8022474 + 8022454 8022494 41 AGTAAAGCTCTCGTGAAGAGCCCGGATAGCTCAGTCGGTAG AGTAAAGCTCTCGTGAAGAGCCCGGATAGCTCAGTCGGCAG < 41bp 1 0.563318456304036 1 0.493117392063141 experiment 0.873363087391929 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ALOXE3 ENSG00000179148 upstream Human protein_coding chr17:8022474 chr17:8022492 . . 0 39 hm5C_associated_SNPs_12193 0 0 1 0 0 exosome 1 0.500231643921102 1 0.999536712157796 hm5C_site_14240 DeepMRMD:1;iRNA_m5C:0.999536712157796 14241 chr17 8022492 8022492 1 + T C rs118079291 8022475 + 8022455 8022495 41 GTAAAGCTCTCGTGAAGAGCCCGGATAGCTCAGTCGGTAGA GTAAAGCTCTCGTGAAGAGCCCGGATAGCTCAGTCGGCAGA < 41bp 1 0.617139352773898 1 0.412626326084137 experiment 0.765721294452203 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control ALOXE3 ENSG00000179148 upstream Human protein_coding chr17:8022475 chr17:8022492 . . 0 38 hm5C_associated_SNPs_12194 0 0 1 0 0 exosome 1 0.50023164392198 1 0.999536712156041 hm5C_site_14241 DeepMRMD:1;iRNA_m5C:0.999536712156041 14242 chr17 8022492 8022492 1 + T C rs118079291 8022476 + 8022456 8022496 41 TAAAGCTCTCGTGAAGAGCCCGGATAGCTCAGTCGGTAGAG TAAAGCTCTCGTGAAGAGCCCGGATAGCTCAGTCGGCAGAG < 41bp 1 0.309670058426061 1 0.354461759328842 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ALOXE3 ENSG00000179148 upstream Human protein_coding chr17:8022476 chr17:8022492 . . 0 37 hm5C_associated_SNPs_12195 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14242 DeepMRMD:1;iRNA_m5C:0.999536712157815 14243 chr17 8022492 8022492 1 + T C rs118079291 8022483 + 8022463 8022503 41 CTCGTGAAGAGCCCGGATAGCTCAGTCGGTAGAGCATCAGA CTCGTGAAGAGCCCGGATAGCTCAGTCGGCAGAGCATCAGA < 41bp 1 0.582412600723873 1 0.19660347700119 experiment 0.835174798552254 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ALOXE3 ENSG00000179148 upstream Human protein_coding chr17:8022483 chr17:8022492 . . 0 30 hm5C_associated_SNPs_12196 0 0 1 0 0 exosome 1 0.500231643920166 1 0.999536712159667 hm5C_site_14243 DeepMRMD:1;iRNA_m5C:0.999536712159667 14244 chr17 8022492 8022492 1 + T C rs118079291 8022485 + 8022465 8022505 41 CGTGAAGAGCCCGGATAGCTCAGTCGGTAGAGCATCAGACT CGTGAAGAGCCCGGATAGCTCAGTCGGCAGAGCATCAGACT < 41bp 1 0.352733961667483 1 0.18701308965683 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ALOXE3 ENSG00000179148 upstream Human protein_coding chr17:8022485 chr17:8022492 . . 0 28 hm5C_associated_SNPs_12197 0 0 1 0 0 exosome 1 0.500231643921081 1 0.999536712157838 hm5C_site_14244 DeepMRMD:1;iRNA_m5C:0.999536712157838 14245 chr17 8022492 8022492 1 + T C rs118079291 8022497 + 8022477 8022517 41 GGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGG GGATAGCTCAGTCGGCAGAGCATCAGACTTTTAATCTGAGG < 41bp 1 0.332637129079186 1 0.0980454385280609 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ALOXE3 ENSG00000179148 upstream Human protein_coding chr17:8022497 chr17:8022492 . . 0 16 hm5C_associated_SNPs_12199 0 0 1 0 0 exosome 1 0.500232305503606 1 0.999535388992789 hm5C_site_14245 DeepMRMD:1;iRNA_m5C:0.999535388992789 14246 chr17 8022492 8022492 1 + T C rs118079291 8022500 + 8022480 8022520 41 TAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTC TAGCTCAGTCGGCAGAGCATCAGACTTTTAATCTGAGGGTC < 41bp 1 0.347845077504483 1 0.531358361244202 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ALOXE3 ENSG00000179148 upstream Human protein_coding chr17:8022500 chr17:8022492 . . 0 13 hm5C_associated_SNPs_12200 0 0 1 0 0 exosome 1 0.500231643923695 0.937283277511596 0.99953671215261 hm5C_site_14246 DeepMRMD:0.937283277511596;iRNA_m5C:0.99953671215261 14247 chr17 8022492 8022492 1 + T C rs118079291 8022504 + 8022484 8022524 41 TCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCCAGG TCAGTCGGCAGAGCATCAGACTTTTAATCTGAGGGTCCAGG < 41bp 1 0.0305489415735633 1 0.00633752346038818 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ALOXE3 ENSG00000179148 upstream Human protein_coding chr17:8022504 chr17:8022492 . . 0 9 hm5C_associated_SNPs_12201 0 0 1 0 0 exosome 1 0.500231643937692 1 0.999536712124615 hm5C_site_14247 DeepMRMD:1;iRNA_m5C:0.999536712124615 14248 chr17 8022492 8022492 1 + T C rs118079291 8022512 + 8022492 8022532 41 TAGAGCATCAGACTTTTAATCTGAGGGTCCAGGGTTCAAGT CAGAGCATCAGACTTTTAATCTGAGGGTCCAGGGTTCAAGT < 41bp 1 0.610402956780897 1 0.809027850627899 experiment 0.779194086438205 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ALOXE3 ENSG00000179148 upstream Human protein_coding chr17:8022512 chr17:8022492 . . 0 1 hm5C_associated_SNPs_12202 0 0 1 0 0 exosome 1 0.500231643789768 0.381944298744202 0.999536712420465 hm5C_site_14248 DeepMRMD:0.381944298744202;iRNA_m5C:0.999536712420465 14249 chr17 8029081 8029081 1 + G T rs554444064 8029065 + 8029045 8029085 41 CGCAGAATCTTTAAGCCGCGCATTGGTGGTTCAGTGGTAGA CGCAGAATCTTTAAGCCGCGCATTGGTGGTTCAGTGTTAGA < 41bp 1 0.0937118074312928 1 0.0179426670074463 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HES7;PER1 ENSG00000179111;ENSG00000179094 intergenic Human other chr17:8029065 chr17:8029081 . . 0 37 hm5C_associated_SNPs_12203 0 0 1 0 0 unknown 1 0.500231643923176 1 0.999536712153648 hm5C_site_14249 DeepMRMD:1;iRNA_m5C:0.999536712153648 14250 chr17 8029081 8029081 1 + G T rs554444064 8029089 + 8029069 8029109 41 GGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGC GGTGGTTCAGTGTTAGAATTCTCGCCTGCCACGCGGGAGGC < 41bp 1 0.699905568138369 1 0.121595978736877 experiment 0.600188863723263 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HES7;PER1 ENSG00000179111;ENSG00000179094 intergenic Human other chr17:8029089 chr17:8029081 . . 0 13 hm5C_associated_SNPs_12205 0 0 1 0 0 unknown 1 0.500231643921696 1 0.999536712156609 hm5C_site_14250 DeepMRMD:1;iRNA_m5C:0.999536712156609 14251 chr17 8029081 8029081 1 + G T rs554444064 8029091 + 8029071 8029111 41 TGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCC TGGTTCAGTGTTAGAATTCTCGCCTGCCACGCGGGAGGCCC < 41bp 1 0.638304763870249 1 0.207177877426147 experiment 0.723390472259501 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HES7;PER1 ENSG00000179111;ENSG00000179094 intergenic Human other chr17:8029091 chr17:8029081 . . 0 11 hm5C_associated_SNPs_12206 0 0 1 0 0 unknown 1 0.500231644206209 1 0.999536711587582 hm5C_site_14251 DeepMRMD:1;iRNA_m5C:0.999536711587582 14252 chr17 8029081 8029081 1 + G T rs554444064 8029093 + 8029073 8029113 41 GTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGG GTTCAGTGTTAGAATTCTCGCCTGCCACGCGGGAGGCCCGG < 41bp 1 0.168396143661256 1 0.290427953004837 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HES7;PER1 ENSG00000179111;ENSG00000179094 intergenic Human other chr17:8029093 chr17:8029081 . . 0 9 hm5C_associated_SNPs_12207 0 0 1 0 0 unknown 1 0.50023163547845 1 0.999536729043101 hm5C_site_14252 DeepMRMD:1;iRNA_m5C:0.999536729043101 14253 chr17 8029081 8029081 1 + G T rs554444064 8029094 + 8029074 8029114 41 TTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGG TTCAGTGTTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGG < 41bp 1 0.258435225678949 1 0.151940196752548 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HES7;PER1 ENSG00000179111;ENSG00000179094 intergenic Human other chr17:8029094 chr17:8029081 . . 0 8 hm5C_associated_SNPs_12208 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_14253 DeepMRMD:1;iRNA_m5C:0.999536712157816 14254 chr17 8029081 8029081 1 + G T rs554444064 8029097 + 8029077 8029117 41 AGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTC AGTGTTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTC < 41bp 1 0.33998123371557 1 0.263351798057556 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HES7;PER1 ENSG00000179111;ENSG00000179094 intergenic Human other chr17:8029097 chr17:8029081 . . 0 5 hm5C_associated_SNPs_12209 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14254 DeepMRMD:1;iRNA_m5C:0.999536712157815 14255 chr17 8029081 8029081 1 + G T rs554444064 8029098 + 8029078 8029118 41 GTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCG GTGTTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCG < 41bp 1 0.550288245915902 1 0.444341540336609 experiment 0.899423508168196 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HES7;PER1 ENSG00000179111;ENSG00000179094 intergenic Human other chr17:8029098 chr17:8029081 . . 0 4 hm5C_associated_SNPs_12210 0 0 1 0 0 unknown 1 0.50023164451297 1 0.99953671097406 hm5C_site_14255 DeepMRMD:1;iRNA_m5C:0.99953671097406 14256 chr17 8029087 8029087 1 + T A rs377519668 8029091 + 8029071 8029111 41 TGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCC TGGTTCAGTGGTAGAAATCTCGCCTGCCACGCGGGAGGCCC < 41bp 1 0.665338187690998 1 0.553690373897552 experiment 0.669323624618004 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HES7;PER1 ENSG00000179111;ENSG00000179094 intergenic Human other chr17:8029091 chr17:8029087 . . 0 17 hm5C_associated_SNPs_12213 0 0 1 0 0 unknown 1 0.500231643926601 0.892619252204896 0.999536712146797 hm5C_site_14256 DeepMRMD:0.892619252204896;iRNA_m5C:0.999536712146797 14257 chr17 8029087 8029087 1 + T A rs377519668 8029093 + 8029073 8029113 41 GTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGG GTTCAGTGGTAGAAATCTCGCCTGCCACGCGGGAGGCCCGG < 41bp 1 0.205576215542043 1 0.430070817470551 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control HES7;PER1 ENSG00000179111;ENSG00000179094 intergenic Human other chr17:8029093 chr17:8029087 . . 0 15 hm5C_associated_SNPs_12214 0 0 1 0 0 unknown 1 0.500231643923623 1 0.999536712152754 hm5C_site_14257 DeepMRMD:1;iRNA_m5C:0.999536712152754 14258 chr17 8029087 8029087 1 + T A rs377519668 8029094 + 8029074 8029114 41 TTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGG TTCAGTGGTAGAAATCTCGCCTGCCACGCGGGAGGCCCGGG < 41bp 1 0.276602321264817 1 0.117693036794662 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HES7;PER1 ENSG00000179111;ENSG00000179094 intergenic Human other chr17:8029094 chr17:8029087 . . 0 14 hm5C_associated_SNPs_12215 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14258 DeepMRMD:1;iRNA_m5C:0.999536712157815 14259 chr17 8029087 8029087 1 + T A rs377519668 8029097 + 8029077 8029117 41 AGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTC AGTGGTAGAAATCTCGCCTGCCACGCGGGAGGCCCGGGTTC < 41bp 1 0.412692732478205 1 0.413004696369171 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HES7;PER1 ENSG00000179111;ENSG00000179094 intergenic Human other chr17:8029097 chr17:8029087 . . 0 11 hm5C_associated_SNPs_12216 0 0 1 0 0 unknown 1 0.500231643910305 1 0.999536712179389 hm5C_site_14259 DeepMRMD:1;iRNA_m5C:0.999536712179389 14260 chr17 8029087 8029087 1 + T A rs377519668 8029098 + 8029078 8029118 41 GTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCG GTGGTAGAAATCTCGCCTGCCACGCGGGAGGCCCGGGTTCG < 41bp 1 0.518109522024521 1 0.527121126651764 experiment 0.963780955950959 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target HES7;PER1 ENSG00000179111;ENSG00000179094 intergenic Human other chr17:8029098 chr17:8029087 . . 0 10 hm5C_associated_SNPs_12217 0 0 1 0 0 unknown 1 0.500231643921081 0.945757746696472 0.999536712157838 hm5C_site_14260 DeepMRMD:0.945757746696472;iRNA_m5C:0.999536712157838 14261 chr17 8090294 8090294 1 + A G rs76800617 8090278 + 8090258 8090298 41 CCTCGTCGGCTAAGGAAGTCCTGTGCTCAGTTTTGTAGCAT CCTCGTCGGCTAAGGAAGTCCTGTGCTCAGTTTTGTGGCAT < 41bp 1 0.671142593758594 1 0.173854291439056 experiment 0.657714812482811 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR4521 ENSG00000266638 upstream Human other chr17:8090278 chr17:8090294 . . 0 37 hm5C_associated_SNPs_12218 0 0 1 0 0 unknown 1 0.500225937788703 1 0.999548124422594 hm5C_site_14261 DeepMRMD:1;iRNA_m5C:0.999548124422594 14262 chr17 8090294 8090294 1 + A G rs76800617 8090285 + 8090265 8090305 41 GGCTAAGGAAGTCCTGTGCTCAGTTTTGTAGCATCAAAACT GGCTAAGGAAGTCCTGTGCTCAGTTTTGTGGCATCAAAACT < 41bp 1 0.625603948231707 1 0.117573857307434 experiment 0.748792103536587 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR4521 ENSG00000266638 upstream Human other chr17:8090285 chr17:8090294 . . 0 30 hm5C_associated_SNPs_12219 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14262 DeepMRMD:1;iRNA_m5C:0.999536712157815 14263 chr17 8090563 8090563 1 + C T rs192993858 8090544 + 8090524 8090564 41 ATCCTGGGTTCGAATCCCAGCGGTGCCTCCGTGTTTCCCCC ATCCTGGGTTCGAATCCCAGCGGTGCCTCCGTGTTTCCCTC < 41bp 1 0.501187741141024 1 0.898456215858459 experiment 0.997624517717952 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR4521 ENSG00000266638 ncRNA_exonic Human other chr17:8090544 chr17:8090563 . . 0 40 hm5C_associated_SNPs_12220 0 0 1 0 0 unknown 1 0.500231643921093 0.203087568283082 0.999536712157815 hm5C_site_14263 DeepMRMD:0.203087568283082;iRNA_m5C:0.999536712157815 14264 chr17 8090563 8090563 1 + C T rs192993858 8090549 + 8090529 8090569 41 GGGTTCGAATCCCAGCGGTGCCTCCGTGTTTCCCCCACGCT GGGTTCGAATCCCAGCGGTGCCTCCGTGTTTCCCTCACGCT < 41bp 1 0.0361757562140535 1 0.0446156859397888 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR4521 ENSG00000266638 ncRNA_exonic Human other chr17:8090549 chr17:8090563 . . 0 35 hm5C_associated_SNPs_12221 0 0 1 0 0 unknown 1 0.50023164676083 1 0.999536706478341 hm5C_site_14264 DeepMRMD:1;iRNA_m5C:0.999536706478341 14265 chr17 8090563 8090563 1 + C T rs192993858 8090550 + 8090530 8090570 41 GGTTCGAATCCCAGCGGTGCCTCCGTGTTTCCCCCACGCTT GGTTCGAATCCCAGCGGTGCCTCCGTGTTTCCCTCACGCTT < 41bp 1 0.69414957200069 1 0.745054125785828 experiment 0.611700855998619 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR4521 ENSG00000266638 ncRNA_exonic Human other chr17:8090550 chr17:8090563 . . 0 34 hm5C_associated_SNPs_12222 0 0 1 0 0 unknown 1 0.500231643921124 0.509891748428344 0.999536712157753 hm5C_site_14265 DeepMRMD:0.509891748428344;iRNA_m5C:0.999536712157753 14266 chr17 8090563 8090563 1 + C T rs192993858 8090553 + 8090533 8090573 41 TCGAATCCCAGCGGTGCCTCCGTGTTTCCCCCACGCTTTTG TCGAATCCCAGCGGTGCCTCCGTGTTTCCCTCACGCTTTTG < 41bp 1 0.470518291223317 1 0.322146773338318 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target MIR4521 ENSG00000266638 ncRNA_exonic Human other chr17:8090553 chr17:8090563 . . 0 31 hm5C_associated_SNPs_12223 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_14266 DeepMRMD:1;iRNA_m5C:0.999536712157815 14267 chr17 8090943 8090943 1 + C T rs187152371 8090923 + 8090903 8090943 41 TAGCAACTGGCCGGTTAGCTCAGTTGGTTAGAGCGTGGTGC TAGCAACTGGCCGGTTAGCTCAGTTGGTTAGAGCGTGGTGT < 41bp 1 0.316300561723497 1 0.343464970588684 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target BORCS6;MIR4521 ENSG00000196544;ENSG00000266638 downstream Human other chr17:8090923 chr17:8090943 . . 0 41 hm5C_associated_SNPs_12224 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14267 DeepMRMD:1;iRNA_m5C:0.999536712157815 14268 chr17 8090943 8090943 1 + C T rs187152371 8090936 + 8090916 8090956 41 GTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAG GTTAGCTCAGTTGGTTAGAGCGTGGTGTTAATAACGCCAAG < 41bp 1 0.658998348474505 1 0.467208921909332 experiment 0.682003303050989 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target BORCS6;MIR4521 ENSG00000196544;ENSG00000266638 downstream Human other chr17:8090936 chr17:8090943 . . 0 28 hm5C_associated_SNPs_12225 0 0 1 0 0 unknown 1 0.500231643539029 1 0.999536712921941 hm5C_site_14268 DeepMRMD:1;iRNA_m5C:0.999536712921941 14269 chr17 8090943 8090943 1 + C T rs187152371 8090952 + 8090932 8090972 41 AGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCC AGAGCGTGGTGTTAATAACGCCAAGGTCGCGGGTTCGATCC < 41bp 1 0.481536823954375 1 0.378381162881851 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target BORCS6;MIR4521 ENSG00000196544;ENSG00000266638 downstream Human other chr17:8090952 chr17:8090943 . . 0 12 hm5C_associated_SNPs_12226 0 0 1 0 0 unknown 1 0.500231643921088 1 0.999536712157824 hm5C_site_14269 DeepMRMD:1;iRNA_m5C:0.999536712157824 14270 chr17 8090943 8090943 1 + C T rs187152371 8090953 + 8090933 8090973 41 GAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCC GAGCGTGGTGTTAATAACGCCAAGGTCGCGGGTTCGATCCC < 41bp 1 0.632588320454366 1 0.500774919986725 experiment 0.734823359091268 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target BORCS6;MIR4521 ENSG00000196544;ENSG00000266638 downstream Human other chr17:8090953 chr17:8090943 . . 0 11 hm5C_associated_SNPs_12227 0 0 1 0 0 unknown 1 0.500231643921097 0.99845016002655 0.999536712157806 hm5C_site_14270 DeepMRMD:0.99845016002655;iRNA_m5C:0.999536712157806 14271 chr17 8090976 8090976 1 + T A rs77463748 8090961 + 8090941 8090981 41 TGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGG TGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGAACGGG < 41bp 1 0.679221874974308 1 0.708017408847809 experiment 0.641556250051385 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target BORCS6;MIR4521 ENSG00000196544;ENSG00000266638 downstream Human other chr17:8090961 chr17:8090976 . . 0 36 hm5C_associated_SNPs_12229 0 0 1 0 0 unknown 1 0.500231643906262 0.583965182304382 0.999536712187475 hm5C_site_14271 DeepMRMD:0.583965182304382;iRNA_m5C:0.999536712187475 14272 chr17 8090976 8090976 1 + T A rs77463748 8090967 + 8090947 8090987 41 TAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCAGGA TAACGCCAAGGTCGCGGGTTCGATCCCCGAACGGGCCAGGA < 41bp 1 0.1255966212422 1 0.233038187026978 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target BORCS6;MIR4521 ENSG00000196544;ENSG00000266638 downstream Human other chr17:8090967 chr17:8090976 . . 0 30 hm5C_associated_SNPs_12230 0 0 1 0 0 unknown 1 0.50023164402795 1 0.9995367119441 hm5C_site_14272 DeepMRMD:1;iRNA_m5C:0.9995367119441 14273 chr17 8090976 8090976 1 + T A rs77463748 8090971 + 8090951 8090991 41 GCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCAGGATTGA GCCAAGGTCGCGGGTTCGATCCCCGAACGGGCCAGGATTGA < 41bp 1 0.466711094199742 1 0.138575345277786 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control BORCS6;MIR4521 ENSG00000196544;ENSG00000266638 downstream Human other chr17:8090971 chr17:8090976 . . 0 26 hm5C_associated_SNPs_12231 0 0 1 0 0 unknown 1 0.500231643921751 1 0.999536712156498 hm5C_site_14273 DeepMRMD:1;iRNA_m5C:0.999536712156498 14274 chr17 8090976 8090976 1 + T A rs77463748 8090972 + 8090952 8090992 41 CCAAGGTCGCGGGTTCGATCCCCGTACGGGCCAGGATTGAA CCAAGGTCGCGGGTTCGATCCCCGAACGGGCCAGGATTGAA < 41bp 1 0.640907825176203 1 0.524924278259277 experiment 0.718184349647594 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control BORCS6;MIR4521 ENSG00000196544;ENSG00000266638 downstream Human other chr17:8090972 chr17:8090976 . . 0 25 hm5C_associated_SNPs_12232 0 0 1 0 0 unknown 1 0.500232067575266 0.950151443481446 0.999535864849468 hm5C_site_14274 DeepMRMD:0.950151443481446;iRNA_m5C:0.999535864849468 14275 chr17 8090976 8090976 1 + T A rs77463748 8090973 + 8090953 8090993 41 CAAGGTCGCGGGTTCGATCCCCGTACGGGCCAGGATTGAAA CAAGGTCGCGGGTTCGATCCCCGAACGGGCCAGGATTGAAA < 41bp 1 0.468907091372902 1 0.444720089435577 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control BORCS6;MIR4521 ENSG00000196544;ENSG00000266638 downstream Human other chr17:8090973 chr17:8090976 . . 0 24 hm5C_associated_SNPs_12233 0 0 1 0 0 unknown 1 0.500231643932415 1 0.99953671213517 hm5C_site_14275 DeepMRMD:1;iRNA_m5C:0.99953671213517 14276 chr17 8090976 8090976 1 + T A rs77463748 8090974 + 8090954 8090994 41 AAGGTCGCGGGTTCGATCCCCGTACGGGCCAGGATTGAAAC AAGGTCGCGGGTTCGATCCCCGAACGGGCCAGGATTGAAAC < 41bp 1 0.247750271435965 1 0.65772408246994 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target BORCS6;MIR4521 ENSG00000196544;ENSG00000266638 downstream Human other chr17:8090974 chr17:8090976 . . 0 23 hm5C_associated_SNPs_12234 0 0 1 0 0 unknown 1 0.500231643945656 0.68455183506012 0.999536712108688 hm5C_site_14276 DeepMRMD:0.68455183506012;iRNA_m5C:0.999536712108688 14277 chr17 8090976 8090976 1 + T A rs77463748 8090978 + 8090958 8090998 41 TCGCGGGTTCGATCCCCGTACGGGCCAGGATTGAAACTTTT TCGCGGGTTCGATCCCCGAACGGGCCAGGATTGAAACTTTT < 41bp 1 0.4172699772629 1 0.435904026031494 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target BORCS6;MIR4521 ENSG00000196544;ENSG00000266638 downstream Human other chr17:8090978 chr17:8090976 . . 0 19 hm5C_associated_SNPs_12235 0 0 1 0 0 unknown 1 0.500231640188787 1 0.999536719622425 hm5C_site_14277 DeepMRMD:1;iRNA_m5C:0.999536719622425 14278 chr17 8090976 8090976 1 + T A rs77463748 8090982 + 8090962 8091002 41 GGGTTCGATCCCCGTACGGGCCAGGATTGAAACTTTTCGAA GGGTTCGATCCCCGAACGGGCCAGGATTGAAACTTTTCGAA < 41bp 1 0.385552701425998 1 0.120173543691635 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control BORCS6;MIR4521 ENSG00000196544;ENSG00000266638 downstream Human other chr17:8090982 chr17:8090976 . . 0 15 hm5C_associated_SNPs_12236 0 0 1 0 0 unknown 1 0.500231643921071 1 0.999536712157858 hm5C_site_14278 DeepMRMD:1;iRNA_m5C:0.999536712157858 14279 chr17 8124887 8124887 1 + G A rs58263745 8124867 + 8124847 8124887 41 AAAGAGAGCTAGCACCGGAGCGTTGGTGGTATAGTGGTAAG AAAGAGAGCTAGCACCGGAGCGTTGGTGGTATAGTGGTAAA < 41bp 1 0.288687992449507 1 0.364035248756409 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124867 chr17:8124887 . . 0 41 hm5C_associated_SNPs_12237 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14279 DeepMRMD:1;iRNA_m5C:0.999536712157815 14280 chr17 8124887 8124887 1 + G A rs58263745 8124888 + 8124868 8124908 41 GTTGGTGGTATAGTGGTAAGCATAGCTGCCTTCCAAGCAGT GTTGGTGGTATAGTGGTAAACATAGCTGCCTTCCAAGCAGT < 41bp 1 0.416209145881056 1 0.406551241874695 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124888 chr17:8124887 . . 0 20 hm5C_associated_SNPs_12238 0 0 1 0 0 unknown 1 0.500231643913967 1 0.999536712172066 hm5C_site_14280 DeepMRMD:1;iRNA_m5C:0.999536712172066 14281 chr17 8124887 8124887 1 + G A rs58263745 8124893 + 8124873 8124913 41 TGGTATAGTGGTAAGCATAGCTGCCTTCCAAGCAGTTGACC TGGTATAGTGGTAAACATAGCTGCCTTCCAAGCAGTTGACC < 41bp 1 0.373971424970498 1 0.142968118190765 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124893 chr17:8124887 . . 0 15 hm5C_associated_SNPs_12239 0 0 1 0 0 unknown 1 0.500231611495093 1 0.999536777009814 hm5C_site_14281 DeepMRMD:1;iRNA_m5C:0.999536777009814 14282 chr17 8124887 8124887 1 + G A rs58263745 8124896 + 8124876 8124916 41 TATAGTGGTAAGCATAGCTGCCTTCCAAGCAGTTGACCCGG TATAGTGGTAAACATAGCTGCCTTCCAAGCAGTTGACCCGG < 41bp 1 0.0139681952453715 1 0.159186542034149 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124896 chr17:8124887 . . 0 12 hm5C_associated_SNPs_12240 0 0 1 0 0 unknown 1 0.500231643921297 1 0.999536712157406 hm5C_site_14282 DeepMRMD:1;iRNA_m5C:0.999536712157406 14283 chr17 8124887 8124887 1 + G A rs58263745 8124897 + 8124877 8124917 41 ATAGTGGTAAGCATAGCTGCCTTCCAAGCAGTTGACCCGGG ATAGTGGTAAACATAGCTGCCTTCCAAGCAGTTGACCCGGG < 41bp 1 0.0939956777861374 1 0.0804309546947479 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124897 chr17:8124887 . . 0 11 hm5C_associated_SNPs_12241 0 0 1 0 0 unknown 1 0.500231643921166 1 0.999536712157668 hm5C_site_14283 DeepMRMD:1;iRNA_m5C:0.999536712157668 14284 chr17 8124887 8124887 1 + G A rs58263745 8124900 + 8124880 8124920 41 GTGGTAAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTC GTGGTAAACATAGCTGCCTTCCAAGCAGTTGACCCGGGTTC < 41bp 1 0.274768243511161 1 0.768259406089783 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124900 chr17:8124887 . . 0 8 hm5C_associated_SNPs_12242 0 0 1 0 0 unknown 1 0.500231643933465 0.463481187820434 0.999536712133069 hm5C_site_14284 DeepMRMD:0.463481187820434;iRNA_m5C:0.999536712133069 14285 chr17 8124887 8124887 1 + G A rs58263745 8124901 + 8124881 8124921 41 TGGTAAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTCG TGGTAAACATAGCTGCCTTCCAAGCAGTTGACCCGGGTTCG < 41bp 1 0.50590932921937 1 0.500464022159576 experiment 0.98818134156126 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124901 chr17:8124887 . . 0 7 hm5C_associated_SNPs_12243 0 0 1 0 0 unknown 1 0.500231643921095 0.999071955680848 0.999536712157811 hm5C_site_14285 DeepMRMD:0.999071955680848;iRNA_m5C:0.999536712157811 14286 chr17 8124887 8124887 1 + G A rs58263745 8124905 + 8124885 8124925 41 AAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTCGATTC AAACATAGCTGCCTTCCAAGCAGTTGACCCGGGTTCGATTC < 41bp 1 0.490804233491105 1 0.726215422153473 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124905 chr17:8124887 . . 0 3 hm5C_associated_SNPs_12244 0 0 1 0 0 unknown 1 0.500231643921092 0.547569155693054 0.999536712157815 hm5C_site_14286 DeepMRMD:0.547569155693054;iRNA_m5C:0.999536712157815 14287 chr17 8124912 8124912 1 + C A rs182964059 8124893 + 8124873 8124913 41 TGGTATAGTGGTAAGCATAGCTGCCTTCCAAGCAGTTGACC TGGTATAGTGGTAAGCATAGCTGCCTTCCAAGCAGTTGAAC < 41bp 1 0.389788828847547 1 0.319129884243011 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124893 chr17:8124912 . . 0 40 hm5C_associated_SNPs_12245 0 0 1 0 0 unknown 1 0.500231630238288 1 0.999536739523424 hm5C_site_14287 DeepMRMD:1;iRNA_m5C:0.999536739523424 14288 chr17 8124912 8124912 1 + C A rs182964059 8124896 + 8124876 8124916 41 TATAGTGGTAAGCATAGCTGCCTTCCAAGCAGTTGACCCGG TATAGTGGTAAGCATAGCTGCCTTCCAAGCAGTTGAACCGG < 41bp 1 0.0167107942642258 1 0.162148088216782 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124896 chr17:8124912 . . 0 37 hm5C_associated_SNPs_12246 0 0 1 0 0 unknown 1 0.500231643916981 1 0.999536712166037 hm5C_site_14288 DeepMRMD:1;iRNA_m5C:0.999536712166037 14289 chr17 8124912 8124912 1 + C A rs182964059 8124897 + 8124877 8124917 41 ATAGTGGTAAGCATAGCTGCCTTCCAAGCAGTTGACCCGGG ATAGTGGTAAGCATAGCTGCCTTCCAAGCAGTTGAACCGGG < 41bp 1 0.0816222364823573 1 0.10651022195816 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124897 chr17:8124912 . . 0 36 hm5C_associated_SNPs_12247 0 0 1 0 0 unknown 1 0.500231643921719 1 0.999536712156562 hm5C_site_14289 DeepMRMD:1;iRNA_m5C:0.999536712156562 14290 chr17 8124912 8124912 1 + C A rs182964059 8124900 + 8124880 8124920 41 GTGGTAAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTC GTGGTAAGCATAGCTGCCTTCCAAGCAGTTGAACCGGGTTC < 41bp 1 0.294285193410287 1 0.731294453144073 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124900 chr17:8124912 . . 0 33 hm5C_associated_SNPs_12248 0 0 1 0 0 unknown 1 0.500232445945148 0.537411093711854 0.999535108109703 hm5C_site_14290 DeepMRMD:0.537411093711854;iRNA_m5C:0.999535108109703 14291 chr17 8124912 8124912 1 + C A rs182964059 8124901 + 8124881 8124921 41 TGGTAAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTCG TGGTAAGCATAGCTGCCTTCCAAGCAGTTGAACCGGGTTCG < 41bp 1 0.472621546614068 1 0.422075390815735 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124901 chr17:8124912 . . 0 32 hm5C_associated_SNPs_12249 0 0 1 0 0 unknown 1 0.500231642703192 1 0.999536714593617 hm5C_site_14291 DeepMRMD:1;iRNA_m5C:0.999536714593617 14292 chr17 8124912 8124912 1 + C A rs182964059 8124905 + 8124885 8124925 41 AAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTCGATTC AAGCATAGCTGCCTTCCAAGCAGTTGAACCGGGTTCGATTC < 41bp 1 0.492916693224046 1 0.721691191196442 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124905 chr17:8124912 . . 0 28 hm5C_associated_SNPs_12250 0 0 1 0 0 unknown 1 0.500231645097258 0.556617617607116 0.999536709805483 hm5C_site_14292 DeepMRMD:0.556617617607116;iRNA_m5C:0.999536709805483 14293 chr17 8124912 8124912 1 + C A rs182964059 8124914 + 8124894 8124934 41 TGCCTTCCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAAC TGCCTTCCAAGCAGTTGAACCGGGTTCGATTCCCGGCCAAC < 41bp 1 0.631601656099434 1 0.76994252204895 experiment 0.736796687801131 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124914 chr17:8124912 . . 0 19 hm5C_associated_SNPs_12252 0 0 1 0 0 unknown 1 0.500231643928486 0.4601149559021 0.999536712143028 hm5C_site_14293 DeepMRMD:0.4601149559021;iRNA_m5C:0.999536712143028 14294 chr17 8124912 8124912 1 + C A rs182964059 8124920 + 8124900 8124940 41 CCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAACGCAAGT CCAAGCAGTTGAACCGGGTTCGATTCCCGGCCAACGCAAGT < 41bp 1 0.168574034037303 1 0.127021014690399 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124920 chr17:8124912 . . 0 13 hm5C_associated_SNPs_12253 0 0 1 0 0 unknown 1 0.500231718753931 1 0.999536562492137 hm5C_site_14294 DeepMRMD:1;iRNA_m5C:0.999536562492137 14295 chr17 8124912 8124912 1 + C A rs182964059 8124925 + 8124905 8124945 41 CAGTTGACCCGGGTTCGATTCCCGGCCAACGCAAGTCGTTT CAGTTGAACCGGGTTCGATTCCCGGCCAACGCAAGTCGTTT < 41bp 1 0.457383964661515 1 0.456393539905548 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124925 chr17:8124912 . . 0 8 hm5C_associated_SNPs_12254 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14295 DeepMRMD:1;iRNA_m5C:0.999536712157815 14296 chr17 8124912 8124912 1 + C A rs182964059 8124926 + 8124906 8124946 41 AGTTGACCCGGGTTCGATTCCCGGCCAACGCAAGTCGTTTT AGTTGAACCGGGTTCGATTCCCGGCCAACGCAAGTCGTTTT < 41bp 1 0.522128995034749 1 0.781047701835632 experiment 0.955742009930502 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124926 chr17:8124912 . . 0 7 hm5C_associated_SNPs_12255 0 0 1 0 0 unknown 1 0.500231639906663 0.437904596328736 0.999536720186674 hm5C_site_14296 DeepMRMD:0.437904596328736;iRNA_m5C:0.999536720186674 14297 chr17 8124912 8124912 1 + C A rs182964059 8124927 + 8124907 8124947 41 GTTGACCCGGGTTCGATTCCCGGCCAACGCAAGTCGTTTTG GTTGAACCGGGTTCGATTCCCGGCCAACGCAAGTCGTTTTG < 41bp 1 0.642367853407478 1 0.374601781368256 experiment 0.715264293185044 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124927 chr17:8124912 . . 0 6 hm5C_associated_SNPs_12256 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14297 DeepMRMD:1;iRNA_m5C:0.999536712157815 14298 chr17 8124912 8124912 1 + C A rs182964059 8124930 + 8124910 8124950 41 GACCCGGGTTCGATTCCCGGCCAACGCAAGTCGTTTTGGGT GAACCGGGTTCGATTCCCGGCCAACGCAAGTCGTTTTGGGT < 41bp 1 0.0325785022561331 1 0.230476051568985 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124930 chr17:8124912 . . 0 3 hm5C_associated_SNPs_12257 0 0 1 0 0 unknown 1 0.500231640771493 1 0.999536718457015 hm5C_site_14298 DeepMRMD:1;iRNA_m5C:0.999536718457015 14299 chr17 8124912 8124912 1 + C A rs182964059 8124931 + 8124911 8124951 41 ACCCGGGTTCGATTCCCGGCCAACGCAAGTCGTTTTGGGTG AACCGGGTTCGATTCCCGGCCAACGCAAGTCGTTTTGGGTG < 41bp 1 0.397780859733113 1 0.193944215774536 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target LINC00324 ENSG00000178977 ncRNA_intronic Human lincRNA chr17:8124931 chr17:8124912 . . 0 2 hm5C_associated_SNPs_12258 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14299 DeepMRMD:1;iRNA_m5C:0.999536712157815 14300 chr17 8172052 8172052 1 + G A rs372608754 8172060 + 8172040 8172080 41 GCCTTCTGCTACGCCACAACCTGTCTGGGCGCTACGAGTCT GCCTTCTGCTACACCACAACCTGTCTGGGCGCTACGAGTCT < 41bp 1 0.227314847597372 1 0.053743302822113 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFAS ENSG00000178921 CDS Human protein_coding chr17:8172060 chr17:8172052 nonsynonymous SNV 0.040 0 13 hm5C_associated_SNPs_12259 0 0 1 0 0 Nucleus 1 0.500241573106811 1 0.999516853786379 hm5C_site_14300 DeepMRMD:1;iRNA_m5C:0.999516853786379 14301 chr17 8172070 8172070 1 + G A rs539244059 8172060 + 8172040 8172080 41 GCCTTCTGCTACGCCACAACCTGTCTGGGCGCTACGAGTCT GCCTTCTGCTACGCCACAACCTGTCTGGGCACTACGAGTCT < 41bp 1 0.325149981922601 1 0.0910758972167969 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFAS ENSG00000178921 CDS Human protein_coding chr17:8172060 chr17:8172070 nonsynonymous SNV 0.146 4 31 hm5C_associated_SNPs_12260 0 0 1 0 0 Nucleus 1 0.500314633220901 1 0.999370733558199 hm5C_site_14301 DeepMRMD:1;iRNA_m5C:0.999370733558199 14302 chr17 9146170 9146170 1 + C T rs2277674 9146162 + 9146142 9146182 41 TCCTTGGGAAAGCACCCCTCCTCCACTCCGGTGCCCCACTC TCCTTGGGAAAGCACCCCTCCTCCACTCTGGTGCCCCACTC < 41bp 1 0.565173274692211 1 0.885272979736328 experiment 0.869653450615579 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout NTN1 ENSG00000065320 UTR3 Human protein_coding chr17:9146162 chr17:9146170 . . 0 29 hm5C_associated_SNPs_12261 0 0 0 0 0 exosome 1 0.500253672217837 0.229454040527344 0.999492655564326 hm5C_site_14302 DeepMRMD:0.229454040527344;iRNA_m5C:0.999492655564326 14303 chr17 9146429 9146429 1 + G A rs148699677 9146427 + 9146407 9146447 41 GTGCCTGCTTTACGGACACGCAGTAATGCCGAAGATTTGCG GTGCCTGCTTTACGGACACGCAATAATGCCGAAGATTTGCG < 41bp 1 0.331879299433419 1 0.0825554728507996 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NTN1 ENSG00000065320 UTR3 Human protein_coding chr17:9146427 chr17:9146429 . . 0 23 hm5C_associated_SNPs_12262 0 0 0 0 0 exosome 1 0.500231548184251 1 0.999536903631499 hm5C_site_14303 DeepMRMD:1;iRNA_m5C:0.999536903631499 14304 chr17 14111854 14111854 1 + C T rs75636595 14111865 + 14111845 14111885 41 AAATCTTCCCTCTTGGCTGCCCCCAGGTATTTACTGTGGAG AAATCTTCCTTCTTGGCTGCCCCCAGGTATTTACTGTGGAG < 41bp 1 0.366994488593097 1 0.338195770978928 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient COX10 ENSG00000006695 UTR3 Human protein_coding chr17:14111865 chr17:14111854 . . 0 10 hm5C_associated_SNPs_12264 2 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14304 DeepMRMD:1;iRNA_m5C:0.999536712157815 Cytochrome-c oxidase deficiency Cytochrome-c oxidase deficiency 14305 chr17 14111876 14111876 1 + T C rs143735639 14111865 + 14111845 14111885 41 AAATCTTCCCTCTTGGCTGCCCCCAGGTATTTACTGTGGAG AAATCTTCCCTCTTGGCTGCCCCCAGGTATTCACTGTGGAG < 41bp 1 0.333764887677274 1 0.317159056663513 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient COX10 ENSG00000006695 UTR3 Human protein_coding chr17:14111865 chr17:14111876 . . 0 32 hm5C_associated_SNPs_12265 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14305 DeepMRMD:1;iRNA_m5C:0.999536712157815 14306 chr17 14205082 14205082 1 + G A rs62636623 14205071 + 14205051 14205091 41 CGACCCGCCAGCCCTGGCCACAGCTCCGGACGGGACGCCCC CGACCCGCCAGCCCTGGCCACAGCTCCGGACAGGACGCCCC < 41bp 1 0.575996906116702 1 0.160254597663879 experiment 0.848006187766596 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HS3ST3B1 ENSG00000125430 CDS Human protein_coding chr17:14205071 chr17:14205082 nonsynonymous SNV 0.000 0 32 hm5C_associated_SNPs_12266 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_14306 DeepMRMD:1;iRNA_m5C:0.999536712157815 14307 chr17 15878796 15878796 1 + G A rs185682716 15878776 + 15878756 15878796 41 AATGGACTGCCTCTCTTGAGCACTTCCCTGGAGCTACCACG AATGGACTGCCTCTCTTGAGCACTTCCCTGGAGCTACCACA < 41bp 1 0.168186464753438 1 0.026873379945755 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADORA2B ENSG00000170425 UTR3 Human protein_coding chr17:15878776 chr17:15878796 . . 0 41 hm5C_associated_SNPs_12268 0 0 1 0 0 Ribosome 1 0.500231643912262 1 0.999536712175477 hm5C_site_14307 DeepMRMD:1;iRNA_m5C:0.999536712175477 14308 chr17 15907568 15907568 1 + G A rs58517927 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCACAGA < 41bp 1 0.123747155104089 1 0.0638697445392609 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907568 synonymous SNV . 0 37 hm5C_associated_SNPs_12269 2 0 1 2 2 Ribosome 1 0.500231643920912 1 0.999536712158176 hm5C_site_14308 DeepMRMD:1;iRNA_m5C:0.999536712158176 not specified not specified 14309 chr17 15929920 15929920 1 + A C rs143293913 15929902 + 15929882 15929922 41 CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATATT CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATCTT < 41bp 1 0.217238720764789 1 0.0309081375598907 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15929902 chr17:15929920 nonsynonymous SNV 0.985 1 39 hm5C_associated_SNPs_12270 0 0 1 1 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_14309 DeepMRMD:1;iRNA_m5C:0.999536712157816 14310 chr17 15931545 15931545 1 + T A rs11554356 15931565 + 15931545 15931585 41 TGAACACTCTACTTCCTTTGCAGCCTTAGTCACACAACTGA AGAACACTCTACTTCCTTTGCAGCCTTAGTCACACAACTGA < 41bp 1 0.507328762548138 1 0.0884763896465302 experiment 0.985342474903724 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TTC19 ENSG00000011295 UTR3 Human protein_coding chr17:15931565 chr17:15931545 . . 0 1 hm5C_associated_SNPs_12271 1 0 1 0 0 Ribosome 1 0.500231550033287 1 0.999536899933427 hm5C_site_14310 DeepMRMD:1;iRNA_m5C:0.999536899933427 Mitochondrial complex III deficiency Mitochondrial complex III deficiency 14311 chr17 15931582 15931582 1 + C G rs143866104 15931565 + 15931545 15931585 41 TGAACACTCTACTTCCTTTGCAGCCTTAGTCACACAACTGA TGAACACTCTACTTCCTTTGCAGCCTTAGTCACACAAGTGA < 41bp 1 0.465918700099296 1 0.109746515750885 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TTC19 ENSG00000011295 UTR3 Human protein_coding chr17:15931565 chr17:15931582 . . 0 38 hm5C_associated_SNPs_12272 1 0 1 1 0 Ribosome 1 0.500231643892705 1 0.99953671221459 hm5C_site_14311 DeepMRMD:1;iRNA_m5C:0.99953671221459 Mitochondrial complex III deficiency Mitochondrial complex III deficiency 14312 chr17 16285404 16285404 1 + C T rs9908960 16285385 + 16285365 16285405 41 GCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATTC < 41bp 1 0.274178147879654 1 0.121844112873077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBB ENSG00000170315 CDS Human protein_coding chr17:16285385 chr17:16285404 synonymous SNV . 0 40 hm5C_associated_SNPs_12273 0 0 1 0 1 Ribosome 1 0.500218441209264 1 0.999563117581471 hm5C_site_14312 DeepMRMD:1;iRNA_m5C:0.999563117581471 14313 chr17 16332191 16332191 1 + G T rs185814710 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC TTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC < 41bp 1 0.633515406579643 1 0.563394546508789 experiment 0.732969186840714 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332191 nonsynonymous SNV 0.979 2 1 hm5C_associated_SNPs_12274 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643923362 0.873210906982422 0.999536712153275 hm5C_site_14313 DeepMRMD:0.873210906982422;iRNA_m5C:0.999536712153275 14314 chr17 16342718 16342718 1 + G A rs61998213 16342711 + 16342691 16342731 41 CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA CGGCCCACAGTGGGGGTGTGCAAACCCAAGAGAACTGGGTA < 41bp 1 0.366851249299017 1 0.250647574663162 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342711 chr17:16342718 . . 0 28 hm5C_associated_SNPs_12275 0 0 1 0 2 Nucleus 1 0.500231643910106 1 0.999536712179789 hm5C_site_14314 DeepMRMD:1;iRNA_m5C:0.999536712179789 14315 chr17 16342718 16342718 1 + G A rs61998213 16342716 + 16342696 16342736 41 CACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTAAGTTG CACAGTGGGGGTGTGCAAACCCAAGAGAACTGGGTAAGTTG < 41bp 1 0.49336985574485 1 0.333793818950653 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342716 chr17:16342718 . . 0 23 hm5C_associated_SNPs_12276 0 0 1 0 2 Nucleus 1 0.500231644961731 1 0.999536710076539 hm5C_site_14315 DeepMRMD:1;iRNA_m5C:0.999536710076539 14316 chr17 16342833 16342833 1 + T C rs11871958 16342848 + 16342828 16342868 41 GATACTTGTAATAGGAAGTGCCGTCAGAAGCGATAACTGAC GATACCTGTAATAGGAAGTGCCGTCAGAAGCGATAACTGAC < 41bp 1 0.0268034760143616 1 0.287608861923218 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD49B ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342848 chr17:16342833 . . 0 6 hm5C_associated_SNPs_12277 0 0 1 0 0 unknown 1 0.500231645450599 1 0.999536709098801 hm5C_site_14316 DeepMRMD:1;iRNA_m5C:0.999536709098801 14317 chr17 16342890 16342890 1 + C A rs374801799 16342874 + 16342854 16342894 41 GAAGCGATAACTGACGACGTCTAATGTCTATCTGACCGCAG GAAGCGATAACTGACGACGTCTAATGTCTATCTGACAGCAG < 41bp 1 0.20986520351612 1 0.0940206944942474 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342874 chr17:16342890 . . 0 37 hm5C_associated_SNPs_12278 0 0 1 0 1 Nucleus 1 0.500231643921522 1 0.999536712156956 hm5C_site_14317 DeepMRMD:1;iRNA_m5C:0.999536712156956 14318 chr17 16342890 16342890 1 + C A rs374801799 16342881 + 16342861 16342901 41 TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGA TAACTGACGACGTCTAATGTCTATCTGACAGCAGTCGCTGA < 41bp 1 0.12124582143659 1 0.0559397637844086 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342881 chr17:16342890 . . 0 30 hm5C_associated_SNPs_12279 0 0 1 0 1 Nucleus 1 0.500239963153329 1 0.999520073693342 hm5C_site_14318 DeepMRMD:1;iRNA_m5C:0.999520073693342 14319 chr17 16344600 16344600 1 + T C rs4617905 16344596 + 16344576 16344616 41 GCAGATTGTGTAGTGGTGAACCTATGGTTTTCTGAAGATAT GCAGATTGTGTAGTGGTGAACCTACGGTTTTCTGAAGATAT < 41bp 1 0.0363548951392248 1 0.111973434686661 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD65 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16344596 chr17:16344600 . . 0 25 hm5C_associated_SNPs_12280 0 0 1 0 0 unknown 1 0.500231643921085 1 0.999536712157829 hm5C_site_14319 DeepMRMD:1;iRNA_m5C:0.999536712157829 14320 chr17 16344601 16344601 1 + G A rs4622550 16344596 + 16344576 16344616 41 GCAGATTGTGTAGTGGTGAACCTATGGTTTTCTGAAGATAT GCAGATTGTGTAGTGGTGAACCTATAGTTTTCTGAAGATAT < 41bp 1 0.0414605078425472 1 0.168481111526489 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD65 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16344596 chr17:16344601 . . 0 26 hm5C_associated_SNPs_12281 0 0 1 0 0 unknown 1 0.500231643929823 1 0.999536712140354 hm5C_site_14320 DeepMRMD:1;iRNA_m5C:0.999536712140354 14321 chr17 17061758 17061758 1 + G A rs569074758 17061773 + 17061753 17061793 41 CCAGAGGAAAAAAACAAGAGCAGCTGCTCTTTTGAGACCTG CCAGAAGAAAAAAACAAGAGCAGCTGCTCTTTTGAGACCTG < 41bp 1 0.0989120500965927 1 0.511709213256836 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17061773 chr17:17061758 synonymous SNV . 0 6 hm5C_associated_SNPs_12282 0 0 0 0 1 Cytosol 1 0.500231643921093 0.976581573486328 0.999536712157815 hm5C_site_14321 DeepMRMD:0.976581573486328;iRNA_m5C:0.999536712157815 14322 chr17 17080665 17080665 1 + C A rs200762157 17080663 + 17080643 17080683 41 TCAGCAGGTTGAAGGAGCAGCTCAAGGCTGCAACGGAAGCA TCAGCAGGTTGAAGGAGCAGCTAAAGGCTGCAACGGAAGCA < 41bp 1 0.371074407357981 1 0.228254050016403 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17080663 chr17:17080665 synonymous SNV . 0 23 hm5C_associated_SNPs_12284 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14322 DeepMRMD:1;iRNA_m5C:0.999536712157815 14323 chr17 17080665 17080665 1 + C A rs200762157 17080673 + 17080653 17080693 41 GAAGGAGCAGCTCAAGGCTGCAACGGAAGCACTGGGGGAGA GAAGGAGCAGCTAAAGGCTGCAACGGAAGCACTGGGGGAGA < 41bp 1 0.254706413608349 1 0.250723600387573 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17080673 chr17:17080665 synonymous SNV . 0 13 hm5C_associated_SNPs_12286 0 0 1 0 1 Cytosol 1 0.500231643915683 1 0.999536712168635 hm5C_site_14323 DeepMRMD:1;iRNA_m5C:0.999536712168635 14324 chr17 17697541 17697541 1 + C T rs34898721 17697528 + 17697508 17697548 41 CCCCTTCAGAAGGACAAGCTCCCTGAGAACCTGCTGTCGGA CCCCTTCAGAAGGACAAGCTCCCTGAGAACCTGTTGTCGGA < 41bp 1 0.123891527932277 1 0.0593386590480804 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17697528 chr17:17697541 synonymous SNV . 0 34 hm5C_associated_SNPs_12287 1 0 1 0 0 chromatin 1 0.500231644302268 1 0.999536711395463 hm5C_site_14324 DeepMRMD:1;iRNA_m5C:0.999536711395463 not specified not specified 14325 chr17 17968940 17968940 1 + G A rs187613009 17968938 + 17968918 17968958 41 AGCCTTGGTGCTCAGTGGTCCCGAGGCCCTAGACCCCCACC AGCCTTGGTGCTCAGTGGTCCCAAGGCCCTAGACCCCCACC < 41bp 1 0.374292383411521 1 0.428774178028107 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GID4 ENSG00000141034 UTR3 Human protein_coding chr17:17968938 chr17:17968940 . . 0 23 hm5C_associated_SNPs_12288 0 0 1 0 0 Nucleus 1 0.50023164294321 1 0.99953671411358 hm5C_site_14325 DeepMRMD:1;iRNA_m5C:0.99953671411358 14326 chr17 17991269 17991269 1 + C T rs561745926 17991278 + 17991258 17991298 41 CGCTACTCTGTCGCCGCCGTCAGACCGGAATTGCCGGTGCC CGCTACTCTGTTGCCGCCGTCAGACCGGAATTGCCGGTGCC < 41bp 1 0.331255551064467 1 0.774197936058044 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DRG2 ENSG00000108591 UTR5 Human protein_coding chr17:17991278 chr17:17991269 . . 0 12 hm5C_associated_SNPs_12290 0 0 1 0 0 Cytosol 1 0.500231648439752 0.451604127883912 0.999536703120496 hm5C_site_14326 DeepMRMD:0.451604127883912;iRNA_m5C:0.999536703120496 14327 chr17 17991294 17991294 1 + G T rs142012845 17991278 + 17991258 17991298 41 CGCTACTCTGTCGCCGCCGTCAGACCGGAATTGCCGGTGCC CGCTACTCTGTCGCCGCCGTCAGACCGGAATTGCCGTTGCC < 41bp 1 0.351655708729346 1 0.760145783424377 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DRG2 ENSG00000108591 UTR5 Human protein_coding chr17:17991278 chr17:17991294 . . 0 37 hm5C_associated_SNPs_12291 0 0 1 0 0 Cytosol 1 0.500231604524714 0.479708433151246 0.999536790950571 hm5C_site_14327 DeepMRMD:0.479708433151246;iRNA_m5C:0.999536790950571 14328 chr17 18003394 18003394 1 + C T rs149156770 18003385 + 18003365 18003405 41 GGCAGAGGGGTACACCAGGCCTGCCTCCTCGGGACCAGAAG GGCAGAGGGGTACACCAGGCCTGCCTCCTTGGGACCAGAAG < 41bp 1 0.146619875164216 1 0.114695072174072 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DRG2 ENSG00000108591 UTR3 Human protein_coding chr17:18003385 chr17:18003394 . . 0 30 hm5C_associated_SNPs_12292 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14328 DeepMRMD:1;iRNA_m5C:0.999536712157815 14329 chr17 18057167 18057167 1 + A T rs712270 18057159 + 18057139 18057179 41 CTGCACCGCCTCATCAATCCCAACTTCTACGGCTATCAGGA CTGCACCGCCTCATCAATCCCAACTTCTTCGGCTATCAGGA < 41bp 1 0.128043754242078 1 0.231480181217194 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MYO15A ENSG00000091536 CDS Human protein_coding chr17:18057159 chr17:18057167 nonsynonymous SNV 0.994 3 29 hm5C_associated_SNPs_12293 2 0 0 0 1 chromatin 1 0.500231643942297 1 0.999536712115406 hm5C_site_14329 DeepMRMD:1;iRNA_m5C:0.999536712115406 not specified not specified 14330 chr17 18061142 18061142 1 + C T rs200926400 18061139 + 18061119 18061159 41 CAGCTGCCAACGGAGCCAGGCCGCGGCCGAGCAGCCGCCGT CAGCTGCCAACGGAGCCAGGCCGTGGCCGAGCAGCCGCCGT < 41bp 1 0.119709175723465 1 0.120968878269196 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MYO15A ENSG00000091536 CDS Human protein_coding chr17:18061139 chr17:18061142 synonymous SNV . 0 24 hm5C_associated_SNPs_12294 1 0 0 0 1 chromatin 1 0.500231628490171 1 0.999536743019657 hm5C_site_14330 DeepMRMD:1;iRNA_m5C:0.999536743019657 Nonsyndromic Hearing Loss, Recessive Nonsyndromic Hearing Loss, Recessive 14331 chr17 18087299 18087299 1 + C A rs1064629 18087312 + 18087292 18087332 41 GCGCTGCCGGCGCCCCTGCCCCGCGGGACGTGGAGAAGGTG GCGCTGCAGGCGCCCCTGCCCCGCGGGACGTGGAGAAGGTG < 41bp 1 0.630199985770914 1 0.604721426963806 experiment 0.739600028458171 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ALKBH5 ENSG00000266677 ncRNA_intronic Human antisense chr17:18087312 chr17:18087299 . . 0 8 hm5C_associated_SNPs_12295 0 0 1 0 0 Cytosol 1 0.500231643921092 0.790557146072388 0.999536712157815 hm5C_site_14331 DeepMRMD:0.790557146072388;iRNA_m5C:0.999536712157815 14332 chr17 18147834 18147834 1 + G A rs191476014 18147842 + 18147822 18147862 41 GCTGGGATTACAGGCGTGAGCCACCATGCCCAGCCCTGCAA GCTGGGATTACAAGCGTGAGCCACCATGCCCAGCCCTGCAA < 41bp 1 0.383196672490415 1 0.0496510863304138 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LLGL1 ENSG00000131899 UTR3 Human protein_coding chr17:18147842 chr17:18147834 . . 0 13 hm5C_associated_SNPs_12296 0 0 1 0 0 Cytosol 1 0.500231643928538 1 0.999536712142924 hm5C_site_14332 DeepMRMD:1;iRNA_m5C:0.999536712142924 14333 chr17 18147837 18147837 1 + G A rs182463990 18147842 + 18147822 18147862 41 GCTGGGATTACAGGCGTGAGCCACCATGCCCAGCCCTGCAA GCTGGGATTACAGGCATGAGCCACCATGCCCAGCCCTGCAA < 41bp 1 0.425783112535652 1 0.0583764016628265 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LLGL1 ENSG00000131899 UTR3 Human protein_coding chr17:18147842 chr17:18147837 . . 0 16 hm5C_associated_SNPs_12298 0 0 1 0 0 Cytosol 1 0.500231643921105 1 0.99953671215779 hm5C_site_14333 DeepMRMD:1;iRNA_m5C:0.99953671215779 14334 chr17 18147841 18147841 1 + G A rs571646111 18147842 + 18147822 18147862 41 GCTGGGATTACAGGCGTGAGCCACCATGCCCAGCCCTGCAA GCTGGGATTACAGGCGTGAACCACCATGCCCAGCCCTGCAA < 41bp 1 0.468175820767481 1 0.0999099910259247 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LLGL1 ENSG00000131899 UTR3 Human protein_coding chr17:18147842 chr17:18147841 . . 0 20 hm5C_associated_SNPs_12299 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14334 DeepMRMD:1;iRNA_m5C:0.999536712157815 14335 chr17 18147846 18147846 1 + C T rs187988401 18147842 + 18147822 18147862 41 GCTGGGATTACAGGCGTGAGCCACCATGCCCAGCCCTGCAA GCTGGGATTACAGGCGTGAGCCACTATGCCCAGCCCTGCAA < 41bp 1 0.523076420415861 1 0.0740965902805328 experiment 0.953847159168278 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LLGL1 ENSG00000131899 UTR3 Human protein_coding chr17:18147842 chr17:18147846 . . 0 25 hm5C_associated_SNPs_12300 0 0 1 0 0 Cytosol 1 0.500231684193733 1 0.999536631612535 hm5C_site_14335 DeepMRMD:1;iRNA_m5C:0.999536631612535 14336 chr17 18147846 18147846 1 + C T rs187988401 18147843 + 18147823 18147863 41 CTGGGATTACAGGCGTGAGCCACCATGCCCAGCCCTGCAAA CTGGGATTACAGGCGTGAGCCACTATGCCCAGCCCTGCAAA < 41bp 1 0.653869857725951 1 0.794956207275391 experiment 0.692260284548098 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LLGL1 ENSG00000131899 UTR3 Human protein_coding chr17:18147843 chr17:18147846 . . 0 24 hm5C_associated_SNPs_12301 0 0 1 0 0 Cytosol 1 0.50023164392076 0.410087585449218 0.999536712158479 hm5C_site_14336 DeepMRMD:0.410087585449218;iRNA_m5C:0.999536712158479 14337 chr17 18167941 18167941 1 + G A rs149229358 18167953 + 18167933 18167973 41 TGCTCATCGGCAGCCTGGAGCAGGCCAGCCTGCCCTGCCAC TGCTCATCAGCAGCCTGGAGCAGGCCAGCCTGCCCTGCCAC < 41bp 1 0.570157266491542 1 0.918501615524292 experiment 0.859685467016916 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MIEF2 ENSG00000177427 CDS Human protein_coding chr17:18167953 chr17:18167941 nonsynonymous SNV 0.223 0 9 hm5C_associated_SNPs_12303 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643936735 0.162996768951416 0.99953671212653 hm5C_site_14337 DeepMRMD:0.162996768951416;iRNA_m5C:0.99953671212653 14338 chr17 18220880 18220880 1 + G T rs73291850 18220876 + 18220856 18220896 41 TGCTGTATTGGGAAGGAGAGCGATGGTCAGTTGGTGCTGCC TGCTGTATTGGGAAGGAGAGCGATTGTCAGTTGGTGCTGCC < 41bp 1 0.181360547416899 1 0.437739759683609 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMCR8 ENSG00000176994 CDS Human protein_coding chr17:18220876 chr17:18220880 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_12304 0 0 1 0 0 chromatin 1 0.500231643951314 1 0.999536712097372 hm5C_site_14338 DeepMRMD:1;iRNA_m5C:0.999536712097372 14339 chr17 18631041 18631041 1 + G A rs146869541 18631040 + 18631020 18631060 41 GCAGGAGCTGGAGACGATGGCGGCCATCAGCAACACTGTCC GCAGGAGCTGGAGACGATGGCAGCCATCAGCAACACTGTCC < 41bp 1 0.693102810057892 1 0.0938627123832703 experiment 0.613794379884216 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18631040 chr17:18631041 synonymous SNV . 0 22 hm5C_associated_SNPs_12305 0 0 0 0 1 Nucleus 1 0.50023164394651 1 0.999536712106979 hm5C_site_14339 DeepMRMD:1;iRNA_m5C:0.999536712106979 14340 chr17 18639052 18639052 1 + C T rs540807510 18639050 + 18639030 18639070 41 TCTTGGCTCACTGCAAGCTCCGCCTCCCGAGTTCAAGCAAT TCTTGGCTCACTGCAAGCTCCGTCTCCCGAGTTCAAGCAAT < 41bp 1 0.233051140388917 1 0.038659393787384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM16L ENSG00000108448 UTR3 Human protein_coding chr17:18639050 chr17:18639052 . . 0 23 hm5C_associated_SNPs_12306 0 0 0 0 0 Nucleus 1 0.500231643921099 1 0.999536712157802 hm5C_site_14340 DeepMRMD:1;iRNA_m5C:0.999536712157802 14341 chr17 18761508 18761508 1 + G A rs11548434 18761501 + 18761481 18761521 41 CCATTTTGCTCCTAGAGAGGCCGCCAGGAGACCCGGCGCTT CCATTTTGCTCCTAGAGAGGCCGCCAGAAGACCCGGCGCTT < 41bp 1 0.218319795269487 1 0.234347432851791 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18761501 chr17:18761508 . . 0 28 hm5C_associated_SNPs_12307 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14341 DeepMRMD:1;iRNA_m5C:0.999536712157815 14342 chr17 18761508 18761508 1 + G A rs11548434 18761504 + 18761484 18761524 41 TTTTGCTCCTAGAGAGGCCGCCAGGAGACCCGGCGCTTTCT TTTTGCTCCTAGAGAGGCCGCCAGAAGACCCGGCGCTTTCT < 41bp 1 0.641829314241581 1 0.203890055418015 experiment 0.716341371516837 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18761504 chr17:18761508 . . 0 25 hm5C_associated_SNPs_12309 0 0 1 0 1 Ribosome 1 0.500231643922827 1 0.999536712154345 hm5C_site_14342 DeepMRMD:1;iRNA_m5C:0.999536712154345 14343 chr17 18761508 18761508 1 + G A rs11548434 18761512 + 18761492 18761532 41 CTAGAGAGGCCGCCAGGAGACCCGGCGCTTTCTTCCTTCTG CTAGAGAGGCCGCCAGAAGACCCGGCGCTTTCTTCCTTCTG < 41bp 1 0.69769799586675 1 0.308438122272491 experiment 0.604604008266501 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18761512 chr17:18761508 . . 0 17 hm5C_associated_SNPs_12311 0 0 1 0 1 Ribosome 1 0.500231643921298 1 0.999536712157404 hm5C_site_14343 DeepMRMD:1;iRNA_m5C:0.999536712157404 14344 chr17 18761508 18761508 1 + G A rs11548434 18761513 + 18761493 18761533 41 TAGAGAGGCCGCCAGGAGACCCGGCGCTTTCTTCCTTCTGC TAGAGAGGCCGCCAGAAGACCCGGCGCTTTCTTCCTTCTGC < 41bp 1 0.552374761644584 1 0.332151114940643 experiment 0.895250476710833 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18761513 chr17:18761508 . . 0 16 hm5C_associated_SNPs_12312 0 0 1 0 1 Ribosome 1 0.500231644538805 1 0.999536710922391 hm5C_site_14344 DeepMRMD:1;iRNA_m5C:0.999536710922391 14345 chr17 18761508 18761508 1 + G A rs11548434 18761517 + 18761497 18761537 41 GAGGCCGCCAGGAGACCCGGCGCTTTCTTCCTTCTGCAGCT GAGGCCGCCAGAAGACCCGGCGCTTTCTTCCTTCTGCAGCT < 41bp 1 0.177895214116314 1 0.21112659573555 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18761517 chr17:18761508 . . 0 12 hm5C_associated_SNPs_12313 0 0 1 0 1 Ribosome 1 0.500231643980076 1 0.999536712039848 hm5C_site_14345 DeepMRMD:1;iRNA_m5C:0.999536712039848 14346 chr17 18768870 18768870 1 + C T rs2305061 18768865 + 18768845 18768885 41 TAAAACATTGAGCTCTTCAGCTCCGCCTTTCTTGTAAGTTT TAAAACATTGAGCTCTTCAGCTCCGTCTTTCTTGTAAGTTT < 41bp 1 0.448430042331417 1 0.393387138843536 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRPSAP2 ENSG00000141127 UTR5 Human protein_coding chr17:18768865 chr17:18768870 . . 0 26 hm5C_associated_SNPs_12314 0 0 1 0 1 Ribosome 1 0.500231643920768 1 0.999536712158463 hm5C_site_14346 DeepMRMD:1;iRNA_m5C:0.999536712158463 14347 chr17 19239702 19239702 1 + T A rs111954981 19239712 + 19239692 19239732 41 GTGATTCTTTTGTAACGAGTCTTTCATGATGTGACTTTGAG GTGATTCTTTAGTAACGAGTCTTTCATGATGTGACTTTGAG < 41bp 1 0.0691489017679214 1 0.0431336462497711 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control B9D1;EPN2 ENSG00000072134 UTR3 Human protein_coding chr17:19239712 chr17:19239702 . . 0 11 hm5C_associated_SNPs_12315 0 0 1 1 0 unknown 1 0.500231271291705 1 0.99953745741659 hm5C_site_14347 DeepMRMD:1;iRNA_m5C:0.99953745741659 14348 chr17 20163529 20163529 1 + A G rs2703791 20163528 + 20163508 20163548 41 GGAAAGAAAAGACCCTCTGGCAGCCTTGGCCCGGGAATACG GGAAAGAAAAGACCCTCTGGCGGCCTTGGCCCGGGAATACG < 41bp 1 0.309118619577322 1 0.362438768148422 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20163528 chr17:20163529 synonymous SNV . 0 22 hm5C_associated_SNPs_12316 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14348 DeepMRMD:1;iRNA_m5C:0.999536712157815 14349 chr17 20217460 20217460 1 + C T rs191585744 20217462 + 20217442 20217482 41 TACTGTCCACTGACCCTGCTCTGCCCACCACCCAGCTGCCT TACTGTCCACTGACCCTGTTCTGCCCACCACCCAGCTGCCT < 41bp 1 0.0913966211896644 1 0.10713604092598 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPECC1 ENSG00000263494 ncRNA_intronic Human lincRNA chr17:20217462 chr17:20217460 . . 0 19 hm5C_associated_SNPs_12317 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14349 DeepMRMD:1;iRNA_m5C:0.999536712157815 14350 chr17 20334296 20334296 1 + A G rs535010399 20334309 + 20334289 20334329 41 GAGTCTGATTACAAAAAGTACTGTGTGTTACAGTAAAGCTA GAGTCTGGTTACAAAAAGTACTGTGTGTTACAGTAAAGCTA < 41bp 1 0.161448628898375 1 0.109925359487534 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USP32P3 ENSG00000189423 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:20334309 chr17:20334296 . . 0 8 hm5C_associated_SNPs_12318 0 0 0 0 0 unknown 1 0.500231628183312 1 0.999536743633375 hm5C_site_14350 DeepMRMD:1;iRNA_m5C:0.999536743633375 14351 chr17 20334301 20334301 1 + A G rs201967513 20334309 + 20334289 20334329 41 GAGTCTGATTACAAAAAGTACTGTGTGTTACAGTAAAGCTA GAGTCTGATTACGAAAAGTACTGTGTGTTACAGTAAAGCTA < 41bp 1 0.18358209625865 1 0.109888941049576 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USP32P3 ENSG00000189423 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:20334309 chr17:20334301 . . 0 13 hm5C_associated_SNPs_12319 0 0 0 0 0 unknown 1 0.500291738138761 1 0.999416523722478 hm5C_site_14351 DeepMRMD:1;iRNA_m5C:0.999416523722478 14352 chr17 21188081 21188081 1 + C A rs535063710 21188077 + 21188057 21188097 41 CCTTGCTGCAGTCGCCGCCGCAGTCCTCGCCGCAGTCGCCG CCTTGCTGCAGTCGCCGCCGCAGTACTCGCCGCAGTCGCCG < 41bp 1 0.656338463636219 1 0.273335754871368 experiment 0.687323072727561 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188077 chr17:21188081 . . 0 25 hm5C_associated_SNPs_12320 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14352 DeepMRMD:1;iRNA_m5C:0.999536712157815 14353 chr17 21188081 21188081 1 + C A rs535063710 21188101 + 21188081 21188121 41 CCTCGCCGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTG ACTCGCCGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTG < 41bp 1 0.425702521740333 1 0.434178948402405 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188101 chr17:21188081 . . 0 1 hm5C_associated_SNPs_12321 0 0 1 0 0 Ribosome 1 0.500231643921073 1 0.999536712157853 hm5C_site_14353 DeepMRMD:1;iRNA_m5C:0.999536712157853 14354 chr17 21188099 21188099 1 + C T rs55767533 21188101 + 21188081 21188121 41 CCTCGCCGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTG CCTCGCCGCAGTCGCCGCTGCCGCCGCCGCCGCCGCCGCTG < 41bp 1 0.388161682515237 1 0.167171865701675 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188101 chr17:21188099 . . 0 19 hm5C_associated_SNPs_12322 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14354 DeepMRMD:1;iRNA_m5C:0.999536712157815 14355 chr17 21188099 21188099 1 + C T rs55767533 21188104 + 21188084 21188124 41 CGCCGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTC CGCCGCAGTCGCCGCTGCCGCCGCCGCCGCCGCCGCTGCTC < 41bp 1 0.407387653972675 1 0.765058159828186 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188104 chr17:21188099 . . 0 16 hm5C_associated_SNPs_12324 0 0 1 0 0 Ribosome 1 0.500231643921092 0.469883680343628 0.999536712157815 hm5C_site_14355 DeepMRMD:0.469883680343628;iRNA_m5C:0.999536712157815 14356 chr17 21188099 21188099 1 + C T rs55767533 21188107 + 21188087 21188127 41 CGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTCCTC CGCAGTCGCCGCTGCCGCCGCCGCCGCCGCCGCTGCTCCTC < 41bp 1 0.345378540113727 1 0.863949179649353 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188107 chr17:21188099 . . 0 13 hm5C_associated_SNPs_12326 0 0 1 0 0 Ribosome 1 0.500231643921086 0.272101640701294 0.999536712157829 hm5C_site_14356 DeepMRMD:0.272101640701294;iRNA_m5C:0.999536712157829 14357 chr17 21188099 21188099 1 + C T rs55767533 21188108 + 21188088 21188128 41 GCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTCCTCC GCAGTCGCCGCTGCCGCCGCCGCCGCCGCCGCTGCTCCTCC < 41bp 1 0.639252581991632 1 0.856318235397339 experiment 0.721494836016736 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188108 chr17:21188099 . . 0 12 hm5C_associated_SNPs_12327 0 0 1 0 0 Ribosome 1 0.50023164392109 0.287363529205322 0.99953671215782 hm5C_site_14357 DeepMRMD:0.287363529205322;iRNA_m5C:0.99953671215782 14358 chr17 21188099 21188099 1 + C T rs55767533 21188110 + 21188090 21188130 41 AGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTCCTCCGC AGTCGCCGCTGCCGCCGCCGCCGCCGCCGCTGCTCCTCCGC < 41bp 1 0.425882977594585 1 0.677108943462372 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188110 chr17:21188099 . . 0 10 hm5C_associated_SNPs_12328 0 0 1 0 0 Ribosome 1 0.500231643920367 0.645782113075256 0.999536712159266 hm5C_site_14358 DeepMRMD:0.645782113075256;iRNA_m5C:0.999536712159266 14359 chr17 21188099 21188099 1 + C T rs55767533 21188111 + 21188091 21188131 41 GTCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTCCTCCGCC GTCGCCGCTGCCGCCGCCGCCGCCGCCGCTGCTCCTCCGCC < 41bp 1 0.638491556309427 1 0.662299811840057 experiment 0.723016887381145 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188111 chr17:21188099 . . 0 9 hm5C_associated_SNPs_12329 0 0 1 0 0 Ribosome 1 0.500231712048808 0.675400376319886 0.999536575902384 hm5C_site_14359 DeepMRMD:0.675400376319886;iRNA_m5C:0.999536575902384 14360 chr17 21188120 21188120 1 + T C rs565637100 21188101 + 21188081 21188121 41 CCTCGCCGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTG CCTCGCCGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCG < 41bp 1 0.409079937838105 1 0.452276200056076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188101 chr17:21188120 . . 0 40 hm5C_associated_SNPs_12331 0 0 1 0 0 Ribosome 1 0.500231643921182 1 0.999536712157637 hm5C_site_14360 DeepMRMD:1;iRNA_m5C:0.999536712157637 14361 chr17 21188120 21188120 1 + T C rs565637100 21188102 + 21188082 21188122 41 CTCGCCGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTGC CTCGCCGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC < 41bp 1 0.686806434086003 1 0.80997622013092 experiment 0.626387131827994 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188102 chr17:21188120 . . 0 39 hm5C_associated_SNPs_12332 0 0 1 0 0 Ribosome 1 0.500231643921092 0.38004755973816 0.999536712157815 hm5C_site_14361 DeepMRMD:0.38004755973816;iRNA_m5C:0.999536712157815 14362 chr17 21188120 21188120 1 + T C rs565637100 21188104 + 21188084 21188124 41 CGCCGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTC CGCCGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTC < 41bp 1 0.430338189459969 1 0.57798570394516 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188104 chr17:21188120 . . 0 37 hm5C_associated_SNPs_12333 0 0 1 0 0 Ribosome 1 0.500231643921092 0.84402859210968 0.999536712157816 hm5C_site_14362 DeepMRMD:0.84402859210968;iRNA_m5C:0.999536712157816 14363 chr17 21188120 21188120 1 + T C rs565637100 21188107 + 21188087 21188127 41 CGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTCCTC CGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCCTC < 41bp 1 0.372956174228679 1 0.738207876682281 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188107 chr17:21188120 . . 0 34 hm5C_associated_SNPs_12335 0 0 1 0 0 Ribosome 1 0.500231643921093 0.523584246635438 0.999536712157814 hm5C_site_14363 DeepMRMD:0.523584246635438;iRNA_m5C:0.999536712157814 14364 chr17 21188120 21188120 1 + T C rs565637100 21188108 + 21188088 21188128 41 GCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTCCTCC GCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCCTCC < 41bp 1 0.680402935731495 1 0.844474673271179 experiment 0.639194128537011 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188108 chr17:21188120 . . 0 33 hm5C_associated_SNPs_12336 0 0 1 0 0 Ribosome 1 0.500231643921101 0.311050653457642 0.999536712157799 hm5C_site_14364 DeepMRMD:0.311050653457642;iRNA_m5C:0.999536712157799 14365 chr17 21188120 21188120 1 + T C rs565637100 21188110 + 21188090 21188130 41 AGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTCCTCCGC AGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCCTCCGC < 41bp 1 0.466398812640036 1 0.772051870822906 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188110 chr17:21188120 . . 0 31 hm5C_associated_SNPs_12337 0 0 1 0 0 Ribosome 1 0.50023164392104 0.455896258354188 0.99953671215792 hm5C_site_14365 DeepMRMD:0.455896258354188;iRNA_m5C:0.99953671215792 14366 chr17 21188120 21188120 1 + T C rs565637100 21188111 + 21188091 21188131 41 GTCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTCCTCCGCC GTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCCTCCGCC < 41bp 1 0.669987192844853 1 0.801268696784973 experiment 0.660025614310295 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188111 chr17:21188120 . . 0 30 hm5C_associated_SNPs_12338 0 0 1 0 0 Ribosome 1 0.500233007057427 0.397462606430054 0.999533985885147 hm5C_site_14366 DeepMRMD:0.397462606430054;iRNA_m5C:0.999533985885147 14367 chr17 21188120 21188120 1 + T C rs565637100 21188114 + 21188094 21188134 41 GCCGCCGCCGCCGCCGCCGCCGCCGCTGCTCCTCCGCCTGG GCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCCTCCGCCTGG < 41bp 1 0.692864917785697 1 0.620034873485565 experiment 0.614270164428606 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K3 ENSG00000034152 UTR5 Human protein_coding chr17:21188114 chr17:21188120 . . 0 27 hm5C_associated_SNPs_12339 0 0 1 0 0 Ribosome 1 0.500231644938933 0.75993025302887 0.999536710122134 hm5C_site_14367 DeepMRMD:0.75993025302887;iRNA_m5C:0.999536710122134 14368 chr17 21319341 21319341 1 + C T rs569037483 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGTGCGTGCGCAGCTCATCAAGCCGCGGG < 41bp 1 0.636885530698895 1 0.51538211107254 experiment 0.72622893860221 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319341 synonymous SNV . 0 19 hm5C_associated_SNPs_12340 0 0 0 0 0 unknown 1 0.500231644290837 0.96923577785492 0.999536711418325 hm5C_site_14368 DeepMRMD:0.96923577785492;iRNA_m5C:0.999536711418325 14369 chr17 21319342 21319342 1 + G A rs111766997 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGTGCGCACGCAGCTCATCAAGCCGCGGG < 41bp 1 0.676133929301198 1 0.304344117641449 experiment 0.647732141397604 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319342 nonsynonymous SNV 0.976 5 20 hm5C_associated_SNPs_12341 0 0 0 0 0 unknown 1 0.500231644293474 1 0.999536711413053 hm5C_site_14369 DeepMRMD:1;iRNA_m5C:0.999536711413053 14370 chr17 21731041 21731041 1 + G A rs145087783 21731040 + 21731020 21731060 41 GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT GATAAAGAAGGCATCCCCCCCAACCAGCAGAGGCTCATCTT < 41bp 1 0.243406263688459 1 0.259616941213608 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731040 chr17:21731041 nonsynonymous SNV 0.729 1 22 hm5C_associated_SNPs_12342 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14370 DeepMRMD:1;iRNA_m5C:0.999536712157815 14371 chr17 26654455 26654455 1 + A G rs556567668 26654467 + 26654447 26654487 41 AAACTGCTAAAGAACATGGCCTGTTTGACATGTTCATGAGT AAACTGCTGAAGAACATGGCCTGTTTGACATGTTCATGAGT < 41bp 1 0.319457136624501 1 0.0678235590457916 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM97 ENSG00000109084 UTR3 Human protein_coding chr17:26654467 chr17:26654455 . . 0 9 hm5C_associated_SNPs_12343 0 0 1 0 0 Endoplasmic reticulum 1 0.500231836803452 1 0.999536326393096 hm5C_site_14371 DeepMRMD:1;iRNA_m5C:0.999536326393096 14372 chr17 26672162 26672162 1 + T C rs556668726 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT CGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT < 41bp 1 0.688447368140474 1 0.946739912033081 experiment 0.623105263719052 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672162 . . 0 1 hm5C_associated_SNPs_12344 0 0 1 2 0 Ribosome 1 0.500231643921092 0.106520175933838 0.999536712157815 hm5C_site_14372 DeepMRMD:0.106520175933838;iRNA_m5C:0.999536712157815 14373 chr17 26672200 26672200 1 + T G rs374010963 26672182 + 26672162 26672202 41 TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCTGT TGACAGAACCCTTGGCCCTTCTCCATGCCTGTGGGATCGGT < 41bp 1 0.663007983451637 1 0.9451864361763 experiment 0.673984033096726 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNFAIP1 ENSG00000109079 UTR3 Human protein_coding chr17:26672182 chr17:26672200 . . 0 39 hm5C_associated_SNPs_12345 0 0 1 19 0 Ribosome 1 0.500231639185208 0.1096271276474 0.999536721629583 hm5C_site_14373 DeepMRMD:0.1096271276474;iRNA_m5C:0.999536721629583 14374 chr17 26725024 26725024 1 + C T rs114008979 26725014 - 26724994 26725034 41 CCAAAGCATCGAGGCTGGCACTGGCCAAGACAGACTCTGGC CCAAAGCATCAAGGCTGGCACTGGCCAAGACAGACTCTGGC < 41bp 1 0.520078606590842 1 0.27054238319397 experiment 0.959842786818316 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SARM1;SLC46A1 ENSG00000004139;ENSG00000076351 UTR3 Human other chr17:26725014 chr17:26725024 . . 0 11 hm5C_associated_SNPs_12346 1 0 0 0 0 unknown 1 0.500231643919032 1 0.999536712161937 hm5C_site_14374 DeepMRMD:1;iRNA_m5C:0.999536712161937 Congenital defect of folate absorption Congenital defect of folate absorption 14375 chr17 26725032 26725032 1 + T C rs189069712 26725014 - 26724994 26725034 41 CCAAAGCATCGAGGCTGGCACTGGCCAAGACAGACTCTGGC CCGAAGCATCGAGGCTGGCACTGGCCAAGACAGACTCTGGC < 41bp 1 0.544990119374951 1 0.421975046396255 experiment 0.910019761250098 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SARM1;SLC46A1 ENSG00000004139;ENSG00000076351 UTR3 Human other chr17:26725014 chr17:26725032 . . 0 3 hm5C_associated_SNPs_12347 0 0 1 0 0 unknown 1 0.500231650105336 1 0.999536699789328 hm5C_site_14375 DeepMRMD:1;iRNA_m5C:0.999536699789328 14376 chr17 27011952 27011952 1 + A G rs535517531 27011948 + 27011928 27011968 41 CCATTTTACCAAACGGCGAACTGCATGGAGAGAGGAAGAGC CCATTTTACCAAACGGCGAACTGCGTGGAGAGAGGAAGAGC < 41bp 1 0.420203382610641 1 0.429911524057388 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011948 chr17:27011952 synonymous SNV . 0 25 hm5C_associated_SNPs_12348 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14376 DeepMRMD:1;iRNA_m5C:0.999536712157815 14377 chr17 27047341 27047341 1 + G A rs113797834 27047345 + 27047325 27047365 41 GGAGCTCCATGTCCCCGGGCCTGTAAGGAATTAGTGCCCTC GGAGCTCCATGTCCCCAGGCCTGTAAGGAATTAGTGCCCTC < 41bp 1 0.474783311495381 1 0.226414114236832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL23A ENSG00000198242 CDS Human protein_coding chr17:27047345 chr17:27047341 nonsynonymous SNV 0.009 1 17 hm5C_associated_SNPs_12349 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14377 DeepMRMD:1;iRNA_m5C:0.999536712157815 14378 chr17 27047349 27047349 1 + A G rs573745975 27047345 + 27047325 27047365 41 GGAGCTCCATGTCCCCGGGCCTGTAAGGAATTAGTGCCCTC GGAGCTCCATGTCCCCGGGCCTGTGAGGAATTAGTGCCCTC < 41bp 1 0.31912149500457 1 0.141162037849426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL23A ENSG00000198242 CDS Human protein_coding chr17:27047345 chr17:27047349 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_12350 0 0 1 0 1 Cytosol 1 0.500231643921034 1 0.999536712157932 hm5C_site_14378 DeepMRMD:1;iRNA_m5C:0.999536712157932 14379 chr17 27049651 27049651 1 + T C rs187794123 27049634 + 27049614 27049654 41 CACTGTAAAGCGACCAAAGTCTGAACAAAGTGATTGGTACC CACTGTAAAGCGACCAAAGTCTGAACAAAGTGATTGGCACC < 41bp 1 0.577587448866234 1 0.763540983200073 experiment 0.844825102267531 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD4A ENSG00000238578;ENSG00000264577 ncRNA_exonic Human other chr17:27049634 chr17:27049651 . . 0 38 hm5C_associated_SNPs_12351 0 0 1 0 0 unknown 1 0.500231647974464 0.472918033599854 0.999536704051071 hm5C_site_14379 DeepMRMD:0.472918033599854;iRNA_m5C:0.999536704051071 14380 chr17 27049651 27049651 1 + T C rs187794123 27049668 + 27049648 27049688 41 TGGTACCTCGTTGTCTGATGCACCTAGGCTCTCCTGGCTCT TGGCACCTCGTTGTCTGATGCACCTAGGCTCTCCTGGCTCT < 41bp 1 0.306718184507194 1 0.160517036914825 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD4A ENSG00000238578;ENSG00000264577 ncRNA_exonic Human other chr17:27049668 chr17:27049651 . . 0 4 hm5C_associated_SNPs_12352 0 0 1 0 0 unknown 1 0.500231622384006 1 0.999536755231988 hm5C_site_14380 DeepMRMD:1;iRNA_m5C:0.999536755231988 14381 chr17 27049651 27049651 1 + T C rs187794123 27049670 + 27049650 27049690 41 GTACCTCGTTGTCTGATGCACCTAGGCTCTCCTGGCTCTGG GCACCTCGTTGTCTGATGCACCTAGGCTCTCCTGGCTCTGG < 41bp 1 0.0835970758651676 1 0.115215599536896 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD4A ENSG00000238578;ENSG00000264577 ncRNA_exonic Human other chr17:27049670 chr17:27049651 . . 0 2 hm5C_associated_SNPs_12353 0 0 1 0 0 unknown 1 0.500233506108932 1 0.999532987782135 hm5C_site_14381 DeepMRMD:1;iRNA_m5C:0.999532987782135 14382 chr17 27050723 27050723 1 + C G rs76539025 27050726 + 27050706 27050746 41 AATGATGCATATGTTAGCGACCAAAGCCTGATCTTTGCTGA AATGATGCATATGTTAGGGACCAAAGCCTGATCTTTGCTGA < 41bp 1 0.199825594697428 1 0.220932364463806 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD4B ENSG00000198242 CDS Human protein_coding chr17:27050726 chr17:27050723 unknown . 0 18 hm5C_associated_SNPs_12354 0 0 1 0 0 unknown 1 0.500231705118248 1 0.999536589763504 hm5C_site_14382 DeepMRMD:1;iRNA_m5C:0.999536589763504 14383 chr17 27050723 27050723 1 + C G rs76539025 27050732 + 27050712 27050752 41 GCATATGTTAGCGACCAAAGCCTGATCTTTGCTGATTAGTC GCATATGTTAGGGACCAAAGCCTGATCTTTGCTGATTAGTC < 41bp 1 0.241461622247022 1 0.0644412040710449 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD4B ENSG00000198242 CDS Human protein_coding chr17:27050732 chr17:27050723 unknown . 0 12 hm5C_associated_SNPs_12355 0 0 1 0 0 unknown 1 0.500231656596 1 0.999536686807999 hm5C_site_14383 DeepMRMD:1;iRNA_m5C:0.999536686807999 14384 chr17 27050723 27050723 1 + C G rs76539025 27050733 + 27050713 27050753 41 CATATGTTAGCGACCAAAGCCTGATCTTTGCTGATTAGTCA CATATGTTAGGGACCAAAGCCTGATCTTTGCTGATTAGTCA < 41bp 1 0.219282367229272 1 0.0828166604042053 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD4B ENSG00000198242 CDS Human protein_coding chr17:27050733 chr17:27050723 unknown . 0 11 hm5C_associated_SNPs_12356 0 0 1 0 0 unknown 1 0.500231748659322 1 0.999536502681355 hm5C_site_14384 DeepMRMD:1;iRNA_m5C:0.999536502681355 14385 chr17 27050723 27050723 1 + C G rs76539025 27050738 + 27050718 27050758 41 GTTAGCGACCAAAGCCTGATCTTTGCTGATTAGTCATAATT GTTAGGGACCAAAGCCTGATCTTTGCTGATTAGTCATAATT < 41bp 1 0.120040476511764 1 0.0862440466880798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD4B ENSG00000198242 CDS Human protein_coding chr17:27050738 chr17:27050723 unknown . 0 6 hm5C_associated_SNPs_12357 0 0 1 0 0 unknown 1 0.500232284884723 1 0.999535430230554 hm5C_site_14385 DeepMRMD:1;iRNA_m5C:0.999535430230554 14386 chr17 27875794 27875794 1 + G A rs549682912 27875803 + 27875783 27875823 41 TAAAGTTTATAGGTCTGTGCCAGCTAGAGAGAAGTTGCTGT TAAAGTTTATAAGTCTGTGCCAGCTAGAGAGAAGTTGCTGT < 41bp 1 0.155048120134569 1 0.376796245574951 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK1 ENSG00000160551 UTR3 Human protein_coding chr17:27875803 chr17:27875794 . . 0 12 hm5C_associated_SNPs_12358 0 0 1 0 0 Nucleus 1 0.500231670677969 1 0.999536658644063 hm5C_site_14386 DeepMRMD:1;iRNA_m5C:0.999536658644063 14387 chr17 27899986 27899986 1 + C G rs11541471 27899975 + 27899955 27899995 41 TGCCACTGTGGCGTGCGGCTCCTCCCCGCGCCGCGAGGCCG TGCCACTGTGGCGTGCGGCTCCTCCCCGCGCGGCGAGGCCG < 41bp 1 0.116894497284885 1 0.0321709215641022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TP53I13 ENSG00000264031 ncRNA_intronic Human antisense chr17:27899975 chr17:27899986 . . 0 32 hm5C_associated_SNPs_12359 0 0 1 0 0 chromatin 1 0.500231643921138 1 0.999536712157724 hm5C_site_14387 DeepMRMD:1;iRNA_m5C:0.999536712157724 14388 chr17 28444183 28444183 1 + A C rs6505162 28444163 + 28444143 28444183 41 TCCAAAAGCTCGGTCTGAGGCCCCTCAGTCTTGCTTCCTAA TCCAAAAGCTCGGTCTGAGGCCCCTCAGTCTTGCTTCCTAC < 41bp 1 0.238372095743962 1 0.0701976418495178 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR423 ENSG00000199071;ENSG00000266919 ncRNA_exonic Human other chr17:28444163 chr17:28444183 . . 0 41 hm5C_associated_SNPs_12360 0 0 1 0 0 unknown 1 0.500231643920832 1 0.999536712158337 hm5C_site_14388 DeepMRMD:1;iRNA_m5C:0.999536712158337 14389 chr17 28712037 28712037 1 + C T rs117723754 28712048 + 28712028 28712068 41 GCATGGTGGCTCAGTGGTAGCAAGCTATCCTTTTGATGATT GCATGGTGGTTCAGTGGTAGCAAGCTATCCTTTTGATGATT < 41bp 1 0.432331048858372 1 0.3496073782444 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28712048 chr17:28712037 synonymous SNV . 0 10 hm5C_associated_SNPs_12361 0 0 1 0 1 Nucleus 1 0.500231646932065 1 0.99953670613587 hm5C_site_14389 DeepMRMD:1;iRNA_m5C:0.99953670613587 14390 chr17 28961059 28961059 1 + C T rs9913939 28961053 + 28961033 28961073 41 TATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGAC TATGACTATAAGAACAAACTCATCTTTGCAATATCTGTGAC < 41bp 1 0.0824288937283098 1 0.159927725791931 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28961053 chr17:28961059 . . 0 27 hm5C_associated_SNPs_12364 0 0 1 0 1 unknown 1 0.500231255200347 1 0.999537489599307 hm5C_site_14390 DeepMRMD:1;iRNA_m5C:0.999537489599307 14391 chr17 28961060 28961060 1 + G A rs192845598 28961053 + 28961033 28961073 41 TATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGAC TATGACTATAAGAACAAACTCATCTTCACAATATCTGTGAC < 41bp 1 0.0624041293269356 1 0.305442333221436 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28961053 chr17:28961060 . . 0 28 hm5C_associated_SNPs_12365 0 0 1 0 1 unknown 1 0.500231949794843 1 0.999536100410313 hm5C_site_14391 DeepMRMD:1;iRNA_m5C:0.999536100410313 14392 chr17 29860839 29860839 1 + G A rs72817714 29860823 + 29860803 29860843 41 CTCCTCCCTCTAAGGGGCGCCATGGGAACAGGCTCCGGAGG CTCCTCCCTCTAAGGGGCGCCATGGGAACAGGCTCCAGAGG < 41bp 1 0.510518506517984 1 0.437711209058762 experiment 0.978962986964033 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RAB11FIP4 ENSG00000131242 UTR3 Human protein_coding chr17:29860823 chr17:29860839 . . 0 37 hm5C_associated_SNPs_12366 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14392 DeepMRMD:1;iRNA_m5C:0.999536712157815 14393 chr17 29860840 29860840 1 + G A rs575106455 29860823 + 29860803 29860843 41 CTCCTCCCTCTAAGGGGCGCCATGGGAACAGGCTCCGGAGG CTCCTCCCTCTAAGGGGCGCCATGGGAACAGGCTCCGAAGG < 41bp 1 0.531981668876679 1 0.511950016021729 experiment 0.936036662246642 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RAB11FIP4 ENSG00000131242 UTR3 Human protein_coding chr17:29860823 chr17:29860840 . . 0 38 hm5C_associated_SNPs_12367 0 0 0 0 0 Ribosome 1 0.500231643921092 0.976099967956542 0.999536712157815 hm5C_site_14393 DeepMRMD:0.976099967956542;iRNA_m5C:0.999536712157815 14394 chr17 29877141 29877141 1 + C A rs575764901 29877123 + 29877103 29877143 41 CCAAGTGGTAAGGCGTCGGTCTCGTAAACCGAAGATCGCGG CCAAGTGGTAAGGCGTCGGTCTCGTAAACCGAAGATCGAGG < 41bp 1 0.598835204966828 1 0.154119402170181 experiment 0.802329590066345 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target RAB11FIP4;MIR193A ENSG00000131242;ENSG00000207614 intergenic Human other chr17:29877123 chr17:29877141 . . 0 39 hm5C_associated_SNPs_12368 0 0 1 0 0 unknown 1 0.5002316439139 1 0.999536712172201 hm5C_site_14394 DeepMRMD:1;iRNA_m5C:0.999536712172201 14395 chr17 29877141 29877141 1 + C A rs575764901 29877147 + 29877127 29877167 41 TAAACCGAAGATCGCGGGTTCGAACCCCGTCCGTGCCTGAG TAAACCGAAGATCGAGGGTTCGAACCCCGTCCGTGCCTGAG < 41bp 1 0.217606406791765 1 0.130625247955322 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control RAB11FIP4;MIR193A ENSG00000131242;ENSG00000207614 intergenic Human other chr17:29877147 chr17:29877141 . . 0 15 hm5C_associated_SNPs_12371 0 0 1 0 0 unknown 1 0.500231643921168 1 0.999536712157663 hm5C_site_14395 DeepMRMD:1;iRNA_m5C:0.999536712157663 14396 chr17 29877141 29877141 1 + C A rs575764901 29877151 + 29877131 29877171 41 CCGAAGATCGCGGGTTCGAACCCCGTCCGTGCCTGAGACCC CCGAAGATCGAGGGTTCGAACCCCGTCCGTGCCTGAGACCC < 41bp 1 0.588100189612457 1 0.0459003150463104 experiment 0.823799620775085 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control RAB11FIP4;MIR193A ENSG00000131242;ENSG00000207614 intergenic Human other chr17:29877151 chr17:29877141 . . 0 11 hm5C_associated_SNPs_12372 0 0 1 0 0 unknown 1 0.50023164383641 1 0.999536712327179 hm5C_site_14396 DeepMRMD:1;iRNA_m5C:0.999536712327179 14397 chr17 29877141 29877141 1 + C A rs575764901 29877152 + 29877132 29877172 41 CGAAGATCGCGGGTTCGAACCCCGTCCGTGCCTGAGACCCG CGAAGATCGAGGGTTCGAACCCCGTCCGTGCCTGAGACCCG < 41bp 1 0.405853903302795 1 0.194780915975571 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target RAB11FIP4;MIR193A ENSG00000131242;ENSG00000207614 intergenic Human other chr17:29877152 chr17:29877141 . . 0 10 hm5C_associated_SNPs_12373 0 0 1 0 0 unknown 1 0.500232189594312 1 0.999535620811376 hm5C_site_14397 DeepMRMD:1;iRNA_m5C:0.999535620811376 14398 chr17 29877141 29877141 1 + C A rs575764901 29877153 + 29877133 29877173 41 GAAGATCGCGGGTTCGAACCCCGTCCGTGCCTGAGACCCGA GAAGATCGAGGGTTCGAACCCCGTCCGTGCCTGAGACCCGA < 41bp 1 0.171352282117695 1 0.0794825255870819 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control RAB11FIP4;MIR193A ENSG00000131242;ENSG00000207614 intergenic Human other chr17:29877153 chr17:29877141 . . 0 9 hm5C_associated_SNPs_12374 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14398 DeepMRMD:1;iRNA_m5C:0.999536712157815 14399 chr17 29877141 29877141 1 + C A rs575764901 29877154 + 29877134 29877174 41 AAGATCGCGGGTTCGAACCCCGTCCGTGCCTGAGACCCGAG AAGATCGAGGGTTCGAACCCCGTCCGTGCCTGAGACCCGAG < 41bp 1 0.250595106408368 1 0.164107829332352 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target RAB11FIP4;MIR193A ENSG00000131242;ENSG00000207614 intergenic Human other chr17:29877154 chr17:29877141 . . 0 8 hm5C_associated_SNPs_12375 0 0 1 0 0 unknown 1 0.50023179130374 1 0.99953641739252 hm5C_site_14399 DeepMRMD:1;iRNA_m5C:0.99953641739252 14400 chr17 29877141 29877141 1 + C A rs575764901 29877158 + 29877138 29877178 41 TCGCGGGTTCGAACCCCGTCCGTGCCTGAGACCCGAGGTAG TCGAGGGTTCGAACCCCGTCCGTGCCTGAGACCCGAGGTAG < 41bp 1 0.353556838437571 1 0.313219308853149 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control RAB11FIP4;MIR193A ENSG00000131242;ENSG00000207614 intergenic Human other chr17:29877158 chr17:29877141 . . 0 4 hm5C_associated_SNPs_12376 0 0 1 0 0 unknown 1 0.500231643906138 1 0.999536712187724 hm5C_site_14400 DeepMRMD:1;iRNA_m5C:0.999536712187724 14401 chr17 30374786 30374786 1 + A C rs138060086 30374780 + 30374760 30374800 41 AGTCTCTTCTTTTCTGACAGCTGAAGAAGCATCTGTAGGGA AGTCTCTTCTTTTCTGACAGCTGAAGCAGCATCTGTAGGGA < 41bp 1 0.471947651955785 1 0.693696618080139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30374780 chr17:30374786 nonsynonymous SNV 0.023 0 27 hm5C_associated_SNPs_12377 0 0 0 0 1 chromatin 1 0.500231640072794 0.612606763839722 0.999536719854411 hm5C_site_14401 DeepMRMD:0.612606763839722;iRNA_m5C:0.999536719854411 14402 chr17 30692396 30692396 1 + G T rs3795244 30692381 + 30692361 30692401 41 CTGTTCCACGTCCTGGAATTCCTCCAATGACTCAAGCACAG CTGTTCCACGTCCTGGAATTCCTCCAATGACTCAATCACAG < 41bp 1 0.113218387896344 1 0.261854857206345 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692381 chr17:30692396 nonsynonymous SNV 0.998 1 36 hm5C_associated_SNPs_12378 0 1 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14402 DeepMRMD:1;iRNA_m5C:0.999536712157815 14403 chr17 33593207 33593207 1 + A G rs12150001 33593214 + 33593194 33593234 41 TGTGCGCGCGCGCACGTGCACATGTGTGTAGGTAGATGGAG TGTGCGCGCGCGCGCGTGCACATGTGTGTAGGTAGATGGAG < 41bp 1 0.687469895126017 1 0.0737942159175873 experiment 0.625060209747966 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLFN5 ENSG00000166750 UTR3 Human protein_coding chr17:33593214 chr17:33593207 . . 0 14 hm5C_associated_SNPs_12379 0 0 1 0 0 nucleus 1 0.500245923956615 1 0.999508152086771 hm5C_site_14403 DeepMRMD:1;iRNA_m5C:0.999508152086771 14404 chr17 33900695 33900695 1 + A G rs114393730 33900679 + 33900659 33900699 41 GGAGATGAAATGCAGCGATGCGATGATGAGTGAAGTAGAGC GGAGATGAAATGCAGCGATGCGATGATGAGTGAAGTGGAGC < 41bp 1 0.408100357345213 1 0.109960287809372 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD7 ENSG00000207297 ncRNA_exonic Human snoRNA chr17:33900679 chr17:33900695 . . 0 37 hm5C_associated_SNPs_12380 0 0 1 0 0 unknown 1 0.500235469579476 1 0.999529060841048 hm5C_site_14404 DeepMRMD:1;iRNA_m5C:0.999529060841048 14405 chr17 33900695 33900695 1 + A G rs114393730 33900704 + 33900684 33900724 41 ATGAGTGAAGTAGAGCCTGACCTGGTATTGCCATTGCTTCA ATGAGTGAAGTGGAGCCTGACCTGGTATTGCCATTGCTTCA < 41bp 1 0.318118789680032 1 0.0546510219573975 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD7 ENSG00000207297 ncRNA_exonic Human snoRNA chr17:33900704 chr17:33900695 . . 0 12 hm5C_associated_SNPs_12381 0 0 1 0 0 unknown 1 0.500231644031434 1 0.999536711937132 hm5C_site_14405 DeepMRMD:1;iRNA_m5C:0.999536711937132 14406 chr17 33900695 33900695 1 + A G rs114393730 33900715 + 33900695 33900735 41 AGAGCCTGACCTGGTATTGCCATTGCTTCACTGTTGGCTTT GGAGCCTGACCTGGTATTGCCATTGCTTCACTGTTGGCTTT < 41bp 1 0.239924565503463 1 0.129554212093353 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD7 ENSG00000207297 ncRNA_exonic Human snoRNA chr17:33900715 chr17:33900695 . . 0 1 hm5C_associated_SNPs_12383 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14406 DeepMRMD:1;iRNA_m5C:0.999536712157815 14407 chr17 33900719 33900719 1 + G T rs561687613 33900704 + 33900684 33900724 41 ATGAGTGAAGTAGAGCCTGACCTGGTATTGCCATTGCTTCA ATGAGTGAAGTAGAGCCTGACCTGGTATTGCCATTTCTTCA < 41bp 1 0.239135640742566 1 0.0365680754184723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD7 ENSG00000207297 ncRNA_exonic Human snoRNA chr17:33900704 chr17:33900719 . . 0 36 hm5C_associated_SNPs_12384 0 0 1 0 0 unknown 1 0.500231643924556 1 0.999536712150888 hm5C_site_14407 DeepMRMD:1;iRNA_m5C:0.999536712150888 14408 chr17 33900719 33900719 1 + G T rs561687613 33900715 + 33900695 33900735 41 AGAGCCTGACCTGGTATTGCCATTGCTTCACTGTTGGCTTT AGAGCCTGACCTGGTATTGCCATTTCTTCACTGTTGGCTTT < 41bp 1 0.113558657167999 1 0.0965151786804199 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD7 ENSG00000207297 ncRNA_exonic Human snoRNA chr17:33900715 chr17:33900719 . . 0 25 hm5C_associated_SNPs_12386 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14408 DeepMRMD:1;iRNA_m5C:0.999536712157815 14409 chr17 33900719 33900719 1 + G T rs561687613 33900725 + 33900705 33900745 41 CTGGTATTGCCATTGCTTCACTGTTGGCTTTGACCAGGGTA CTGGTATTGCCATTTCTTCACTGTTGGCTTTGACCAGGGTA < 41bp 1 0.340692310381638 1 0.152441650629044 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD7 ENSG00000207297 ncRNA_exonic Human snoRNA chr17:33900725 chr17:33900719 . . 0 15 hm5C_associated_SNPs_12387 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14409 DeepMRMD:1;iRNA_m5C:0.999536712157815 14410 chr17 34051052 34051052 1 + C T rs141919698 34051057 + 34051037 34051077 41 TTGTAATTGAGAGCTCATTTCAAAAGCAGAAAAAGACAACA TTGTAATTGAGAGCTTATTTCAAAAGCAGAAAAAGACAACA < 41bp 1 0.490745789507318 1 0.656023442745209 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34051057 chr17:34051052 . . 0 16 hm5C_associated_SNPs_12388 0 0 1 2 0 Cytosol 1 0.500231666110708 0.687953114509582 0.999536667778585 hm5C_site_14410 DeepMRMD:0.687953114509582;iRNA_m5C:0.999536667778585 14411 chr17 34052513 34052513 1 + C T rs17638867 34052508 + 34052488 34052528 41 GTTGCAAAGCTTGTGGGGAGCGGTCCCACAAAGCACTTTCT GTTGCAAAGCTTGTGGGGAGCGGTCTCACAAAGCACTTTCT < 41bp 1 0.394829626490354 1 0.247523039579391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2B1 ENSG00000006125 UTR3 Human protein_coding chr17:34052508 chr17:34052513 . . 0 26 hm5C_associated_SNPs_12389 0 0 1 19 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_14411 DeepMRMD:1;iRNA_m5C:0.999536712157815 14412 chr17 34070282 34070282 1 + G C rs113987049 34070289 + 34070269 34070309 41 AGGCACCTGGGGTGGGGGGGCGGAGCCCAGGCCTCTGGCTG AGGCACCTGGGGTCGGGGGGCGGAGCCCAGGCCTCTGGCTG < 41bp 1 0.619927090093105 1 0.874453485012054 experiment 0.76014581981379 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RASL10B ENSG00000141150 UTR3 Human other chr17:34070289 chr17:34070282 . . 0 14 hm5C_associated_SNPs_12392 0 0 1 0 0 insoluble cytoplasm 1 0.500231643921092 0.251093029975892 0.999536712157815 hm5C_site_14412 DeepMRMD:0.251093029975892;iRNA_m5C:0.999536712157815 14413 chr17 34070283 34070283 1 + G A rs226417 34070289 + 34070269 34070309 41 AGGCACCTGGGGTGGGGGGGCGGAGCCCAGGCCTCTGGCTG AGGCACCTGGGGTGAGGGGGCGGAGCCCAGGCCTCTGGCTG < 41bp 1 0.653454262744866 1 0.849496603012085 experiment 0.693091474510267 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RASL10B ENSG00000141150 UTR3 Human other chr17:34070289 chr17:34070283 . . 0 15 hm5C_associated_SNPs_12393 0 0 1 0 0 insoluble cytoplasm 1 0.500231643921092 0.30100679397583 0.999536712157815 hm5C_site_14413 DeepMRMD:0.30100679397583;iRNA_m5C:0.999536712157815 14414 chr17 34070299 34070299 1 + G A rs117086316 34070289 + 34070269 34070309 41 AGGCACCTGGGGTGGGGGGGCGGAGCCCAGGCCTCTGGCTG AGGCACCTGGGGTGGGGGGGCGGAGCCCAGACCTCTGGCTG < 41bp 1 0.693930224346186 1 0.875723898410797 experiment 0.612139551307627 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RASL10B ENSG00000141150 UTR3 Human other chr17:34070289 chr17:34070299 . . 0 31 hm5C_associated_SNPs_12394 0 0 0 0 0 insoluble cytoplasm 1 0.500231643921093 0.248552203178406 0.999536712157815 hm5C_site_14414 DeepMRMD:0.248552203178406;iRNA_m5C:0.999536712157815 14415 chr17 34948295 34948295 1 + G C rs563733426 34948307 + 34948287 34948327 41 GAGTCCCGGCCGGAGGCAGGCCGGGACTCTGGTGGGTCTAG GAGTCCCGCCCGGAGGCAGGCCGGGACTCTGGTGGGTCTAG < 41bp 1 0.638556300253557 1 0.578600585460663 experiment 0.722887399492886 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DHRS11 ENSG00000108272 UTR5 Human other chr17:34948307 chr17:34948295 . . 0 9 hm5C_associated_SNPs_12395 0 0 0 0 0 Cytosol 1 0.500231551431755 0.842798829078674 0.999536897136491 hm5C_site_14415 DeepMRMD:0.842798829078674;iRNA_m5C:0.999536897136491 14416 chr17 34958640 34958640 1 + C T rs114566242 34958622 + 34958602 34958642 41 GGAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCG GGAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGTCG < 41bp 1 0.45131565914565 1 0.372212380170822 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM1 ENSG00000129282 CDS Human other chr17:34958622 chr17:34958640 nonsynonymous SNV 0.001 0 39 hm5C_associated_SNPs_12396 0 0 0 0 0 nucleolus 1 0.500231643039643 1 0.999536713920715 hm5C_site_14416 DeepMRMD:1;iRNA_m5C:0.999536713920715 14417 chr17 34958640 34958640 1 + C T rs114566242 34958623 + 34958603 34958643 41 GAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCGG GAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGTCGG < 41bp 1 0.341678978407534 1 0.418346643447876 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM1 ENSG00000129282 CDS Human other chr17:34958623 chr17:34958640 nonsynonymous SNV 0.001 0 38 hm5C_associated_SNPs_12397 0 0 0 0 0 nucleolus 1 0.50023164392115 1 0.9995367121577 hm5C_site_14417 DeepMRMD:1;iRNA_m5C:0.9995367121577 14418 chr17 34958640 34958640 1 + C T rs114566242 34958624 + 34958604 34958644 41 AGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCGGG AGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGTCGGG < 41bp 1 0.513417260296479 1 0.316949129104614 experiment 0.973165479407043 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM1 ENSG00000129282 CDS Human other chr17:34958624 chr17:34958640 nonsynonymous SNV 0.001 0 37 hm5C_associated_SNPs_12398 0 0 0 0 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14418 DeepMRMD:1;iRNA_m5C:0.999536712157815 14419 chr17 35414122 35414122 1 + C T rs34871681 35414116 + 35414096 35414136 41 GCCTAATACACGCAAGGGCGCTGTCCCGCCCAACCCCGCCT GCCTAATACACGCAAGGGCGCTGTCCTGCCCAACCCCGCCT < 41bp 1 0.486481661716457 1 0.0327925384044647 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 UTR3 Human other chr17:35414116 chr17:35414122 . . 0 27 hm5C_associated_SNPs_12399 0 0 1 0 0 chromatin 1 0.500231643921086 1 0.999536712157827 hm5C_site_14419 DeepMRMD:1;iRNA_m5C:0.999536712157827 14420 chr17 36619105 36619105 1 + G A rs530373399 36619123 + 36619103 36619143 41 CCGCCTGGAGCCCATGGACACCATCTTTGTCAAGAATGTGA CCACCTGGAGCCCATGGACACCATCTTTGTCAAGAATGTGA < 41bp 1 0.0300772800748686 1 0.0343067049980164 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP23 ENSG00000225485 CDS Human other chr17:36619123 chr17:36619105 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_12400 0 0 0 0 2 nucleus 1 0.50023164392113 1 0.999536712157741 hm5C_site_14420 DeepMRMD:1;iRNA_m5C:0.999536712157741 14421 chr17 36619139 36619139 1 + T C rs61999279 36619123 + 36619103 36619143 41 CCGCCTGGAGCCCATGGACACCATCTTTGTCAAGAATGTGA CCGCCTGGAGCCCATGGACACCATCTTTGTCAAGAACGTGA < 41bp 1 0.0363516451602383 1 0.0406434834003448 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP23 ENSG00000225485 CDS Human other chr17:36619123 chr17:36619139 synonymous SNV . 0 37 hm5C_associated_SNPs_12401 0 0 1 0 2 nucleus 1 0.500231643921095 1 0.999536712157811 hm5C_site_14421 DeepMRMD:1;iRNA_m5C:0.999536712157811 14422 chr17 36622902 36622902 1 + C T rs146574715 36622899 + 36622879 36622919 41 CGGTTGGAGGAGGTGGCTGCCCCCCGCCCGTGGCCCTGCTC CGGTTGGAGGAGGTGGCTGCCCCTCGCCCGTGGCCCTGCTC < 41bp 1 0.0914267161655351 1 0.310184925794601 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARHGAP23 ENSG00000225485 CDS Human other chr17:36622899 chr17:36622902 synonymous SNV . 0 24 hm5C_associated_SNPs_12402 0 0 0 0 0 nucleus 1 0.500231643912612 1 0.999536712174776 hm5C_site_14422 DeepMRMD:1;iRNA_m5C:0.999536712174776 14423 chr17 36890623 36890623 1 + C T rs111988561 36890632 + 36890612 36890652 41 AGACTCCACCACCAGTCCTGCTAGTGAGGGTTCCCCGGTGA AGACTCCACCATCAGTCCTGCTAGTGAGGGTTCCCCGGTGA < 41bp 1 0.636830064155779 1 0.162223994731903 experiment 0.726339871688442 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CISD3;PCGF2 ENSG00000056661;ENSG00000230055 UTR3 Human other chr17:36890632 chr17:36890623 . . 0 12 hm5C_associated_SNPs_12403 0 0 0 0 0 unknown 1 0.500234488359489 1 0.999531023281023 hm5C_site_14423 DeepMRMD:1;iRNA_m5C:0.999531023281023 14424 chr17 36890623 36890623 1 + C T rs111988561 36890640 - 36890620 36890660 41 CCTTACCCTCACCGGGGAACCCTCACTAGCAGGACTGGTGG CCTTACCCTCACCGGGGAACCCTCACTAGCAGGACTGATGG < 41bp 1 0.465893686903536 1 0.113353192806244 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CISD3;PCGF2 ENSG00000056661;ENSG00000230055 UTR3 Human other chr17:36890640 chr17:36890623 . . 0 38 hm5C_associated_SNPs_12404 0 0 1 0 0 unknown 1 0.50023166532233 1 0.999536669355339 hm5C_site_14424 DeepMRMD:1;iRNA_m5C:0.999536669355339 14425 chr17 36890623 36890623 1 + C T rs111988561 36890641 - 36890621 36890661 41 ACCTTACCCTCACCGGGGAACCCTCACTAGCAGGACTGGTG ACCTTACCCTCACCGGGGAACCCTCACTAGCAGGACTGATG < 41bp 1 0.0579669671019102 1 0.0263895094394684 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CISD3;PCGF2 ENSG00000056661;ENSG00000230055 UTR3 Human other chr17:36890641 chr17:36890623 . . 0 39 hm5C_associated_SNPs_12405 0 0 1 0 0 unknown 1 0.500231643921211 1 0.999536712157578 hm5C_site_14425 DeepMRMD:1;iRNA_m5C:0.999536712157578 14426 chr17 37023910 37023910 1 + C G rs117293333 37023921 + 37023901 37023941 41 GGTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAG GGTATAGCTGAGTGGTAGAGCATTTGACTGCAGATCAAGAG < 41bp 1 0.148989933048665 1 0.120792955160141 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL23;LASP1 ENSG00000244086;ENSG00000002834 intergenic Human other chr17:37023921 chr17:37023910 . . 0 10 hm5C_associated_SNPs_12406 0 0 1 0 0 unknown 1 0.500231644097545 1 0.99953671180491 hm5C_site_14426 DeepMRMD:1;iRNA_m5C:0.99953671180491 14427 chr17 37023968 37023968 1 + C A rs182985889 37023964 + 37023944 37023984 41 CCCCGGTTCAAATCCGGGTGCCCCCTCGGGTTTCTTTAAGT CCCCGGTTCAAATCCGGGTGCCCCATCGGGTTTCTTTAAGT < 41bp 1 0.204229739216839 1 0.117579996585846 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target RPL23;LASP1 ENSG00000244086;ENSG00000002834 intergenic Human other chr17:37023964 chr17:37023968 . . 0 25 hm5C_associated_SNPs_12407 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14427 DeepMRMD:1;iRNA_m5C:0.999536712157815 14428 chr17 37070658 37070658 1 + A C rs525989 37070657 + 37070637 37070677 41 GGAGCCAGAGCGTCGGGATTCACAGGACGGCAGCAGCTACC GGAGCCAGAGCGTCGGGATTCCCAGGACGGCAGCAGCTACC < 41bp 1 0.546624134629239 1 0.147747993469238 experiment 0.906751730741521 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37070657 chr17:37070658 synonymous SNV . 0 22 hm5C_associated_SNPs_12409 0 0 1 0 2 Cytosol 1 0.500231643951124 1 0.999536712097752 hm5C_site_14428 DeepMRMD:1;iRNA_m5C:0.999536712097752 14429 chr17 37075096 37075096 1 + C A rs114909359 37075095 + 37075075 37075115 41 GCATCCGTCCTGGGCGTGACCCGTCCATTCTTCAGTGTCTC GCATCCGTCCTGGGCGTGACCAGTCCATTCTTCAGTGTCTC < 41bp 1 0.158830500988017 1 0.0802165269851685 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LASP1 ENSG00000265784 ncRNA_exonic Human antisense chr17:37075095 chr17:37075096 . . 0 22 hm5C_associated_SNPs_12410 0 0 1 1 0 Cytosol 1 0.500231643958334 1 0.999536712083331 hm5C_site_14429 DeepMRMD:1;iRNA_m5C:0.999536712083331 14430 chr17 37075506 37075506 1 + G A rs660413 37075510 + 37075490 37075530 41 CTCTGCCGCTGTGTAGGGACCAGTGGGATGGGCTCTACCTC CTCTGCCGCTGTGTAGAGACCAGTGGGATGGGCTCTACCTC < 41bp 1 0.585784490261328 1 0.667814016342163 experiment 0.828431019477343 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000265784 ncRNA_intronic Human antisense chr17:37075510 chr17:37075506 . . 0 17 hm5C_associated_SNPs_12411 0 0 1 0 0 Cytosol 1 0.50023164385724 0.664371967315674 0.99953671228552 hm5C_site_14430 DeepMRMD:0.664371967315674;iRNA_m5C:0.99953671228552 14431 chr17 37358647 37358647 1 + C A rs2228666 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCAG < 41bp 1 0.122473289885601 1 0.0301035642623901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358647 synonymous SNV . 0 40 hm5C_associated_SNPs_12412 0 0 1 0 2 chromatin 1 0.500231643919641 1 0.999536712160717 hm5C_site_14431 DeepMRMD:1;iRNA_m5C:0.999536712160717 14432 chr17 37358647 37358647 1 + C A rs2228666 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTCGATGCAGGAAAAACACCTTGGCCCGCCGGAAGGGCA < 41bp 1 0.216463622673647 1 0.118910044431686 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358647 synonymous SNV . 0 11 hm5C_associated_SNPs_12413 0 0 1 0 2 chromatin 1 0.500231643921038 1 0.999536712157923 hm5C_site_14432 DeepMRMD:1;iRNA_m5C:0.999536712157923 14433 chr17 37358647 37358647 1 + C A rs2228666 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCAGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA < 41bp 1 0.243437730770942 1 0.063463419675827 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358647 synonymous SNV . 0 5 hm5C_associated_SNPs_12414 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14433 DeepMRMD:1;iRNA_m5C:0.999536712157815 14434 chr17 37358647 37358647 1 + C A rs2228666 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCAGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT < 41bp 1 0.236601958359804 1 0.133879870176315 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358647 synonymous SNV . 0 4 hm5C_associated_SNPs_12415 0 0 1 0 2 chromatin 1 0.500231644023578 1 0.999536711952845 hm5C_site_14434 DeepMRMD:1;iRNA_m5C:0.999536711952845 14435 chr17 37358679 37358679 1 + G A rs201777990 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGACACA < 41bp 1 0.19517879025496 1 0.0392897427082062 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358679 synonymous SNV . 0 37 hm5C_associated_SNPs_12418 0 0 1 0 1 chromatin 1 0.500231644044476 1 0.999536711911049 hm5C_site_14435 DeepMRMD:1;iRNA_m5C:0.999536711911049 14436 chr17 37358679 37358679 1 + G A rs201777990 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGACACAT < 41bp 1 0.225418906330266 1 0.0684616565704346 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358679 synonymous SNV . 0 36 hm5C_associated_SNPs_12419 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_14436 DeepMRMD:1;iRNA_m5C:0.999536712157815 14437 chr17 37358679 37358679 1 + G A rs201777990 37358680 + 37358660 37358700 41 TGGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGTGT TGGCCCGCCGGAAGGGCAGACACATGGGCATAGGTAAGTGT < 41bp 1 0.35980387595095 1 0.178043186664581 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358680 chr17:37358679 synonymous SNV . 0 20 hm5C_associated_SNPs_12422 0 0 1 0 1 chromatin 1 0.50023165258017 1 0.99953669483966 hm5C_site_14437 DeepMRMD:1;iRNA_m5C:0.99953669483966 14438 chr17 37358679 37358679 1 + G A rs201777990 37358688 + 37358668 37358708 41 CGGAAGGGCAGGCACATGGGCATAGGTAAGTGTGGTCATCT CGGAAGGGCAGACACATGGGCATAGGTAAGTGTGGTCATCT < 41bp 1 0.206243149477929 1 0.0847881138324738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358688 chr17:37358679 synonymous SNV . 0 12 hm5C_associated_SNPs_12423 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14438 DeepMRMD:1;iRNA_m5C:0.999536712157815 14439 chr17 37676269 37676269 1 + G T rs61747400 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAAGCGTTGCACAGCTGAACAGACCCTACA < 41bp 1 0.26134327868597 1 0.128199607133865 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676269 synonymous SNV . 0 18 hm5C_associated_SNPs_12424 0 0 1 0 1 Nucleus 1 0.500231275624192 1 0.999537448751617 hm5C_site_14439 DeepMRMD:1;iRNA_m5C:0.999537448751617 14440 chr17 37681085 37681085 1 + C T rs538927859 37681077 + 37681057 37681097 41 ACTGAGCCTGTGAAGAACAGCAGCCCAGCACCACCTCAGCC ACTGAGCCTGTGAAGAACAGCAGCCCAGTACCACCTCAGCC < 41bp 1 0.372007798762815 1 0.466533720493317 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37681077 chr17:37681085 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_12425 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_14440 DeepMRMD:1;iRNA_m5C:0.999536712157816 14441 chr17 37809750 37809750 1 + G A rs201782167 37809758 + 37809738 37809778 41 GCTGCTGAGGCCGCGCCCTCCCCGCCCTGAGGTGGGGGCCC GCTGCTGAGGCCACGCCCTCCCCGCCCTGAGGTGGGGGCCC < 41bp 1 0.188046100961632 1 0.504662752151489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STARD3 ENSG00000131748 UTR5 Human protein_coding chr17:37809758 chr17:37809750 . . 0 13 hm5C_associated_SNPs_12426 0 0 1 0 1 Ribosome 1 0.500231643921093 0.990674495697022 0.999536712157815 hm5C_site_14441 DeepMRMD:0.990674495697022;iRNA_m5C:0.999536712157815 14442 chr17 37814080 37814080 1 + G A rs1877031 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGCCGTGCTGCAGCTCCGGCACTGGTGGGTG < 41bp 1 0.405495431410254 1 0.170491755008698 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814080 nonsynonymous SNV 0.635 2 22 hm5C_associated_SNPs_12427 0 1 1 0 3 Ribosome 1 0.500231643921139 1 0.999536712157723 hm5C_site_14442 DeepMRMD:1;iRNA_m5C:0.999536712157723 14443 chr17 37814086 37814086 1 + G A rs140618662 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGCCGTGCTGCGGCTCCAGCACTGGTGGGTG < 41bp 1 0.421297593000522 1 0.246691793203354 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814086 nonsynonymous SNV 0.302 0 28 hm5C_associated_SNPs_12428 0 0 1 0 3 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_14443 DeepMRMD:1;iRNA_m5C:0.99953671215782 14444 chr17 37864584 37864584 1 + A C rs61737968 37864579 + 37864559 37864599 41 GCTTCCCCCTCCCAGGATATCCAGGAGGTGCAGGGCTACGT GCTTCCCCCTCCCAGGATATCCAGGCGGTGCAGGGCTACGT < 41bp 1 0.420012877991733 1 0.713628172874451 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37864579 chr17:37864584 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_12429 1 0 1 0 1 Cytosol 1 0.500231643905932 0.572743654251098 0.999536712188136 hm5C_site_14444 DeepMRMD:0.572743654251098;iRNA_m5C:0.999536712188136 not specified not specified 14445 chr17 38230516 38230516 1 + G A rs547817957 38230508 + 38230488 38230528 41 CACAGCCCGGGACCCACAAACCCAGCTTGCCCCCAGCCCTC CACAGCCCGGGACCCACAAACCCAGCTTACCCCCAGCCCTC < 41bp 1 0.406247730755394 1 0.431900203227997 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient THRA ENSG00000126351 UTR5 Human protein_coding chr17:38230508 chr17:38230516 . . 0 29 hm5C_associated_SNPs_12431 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_14445 DeepMRMD:1;iRNA_m5C:0.999536712157815 14446 chr17 38288318 38288318 1 + T C rs77077922 38288303 + 38288283 38288323 41 TCAGTTCCTTCTTGGAGGGACCACTCAGTAGAGCCTCTAAG TCAGTTCCTTCTTGGAGGGACCACTCAGTAGAGCCCCTAAG < 41bp 1 0.0567846805573132 1 0.0727232098579407 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSL1 ENSG00000188895 CDS Human protein_coding chr17:38288303 chr17:38288318 synonymous SNV . 0 36 hm5C_associated_SNPs_12432 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_14446 DeepMRMD:1;iRNA_m5C:0.999536712157815 14447 chr17 38474693 38474693 1 + G T rs114559376 38474697 + 38474677 38474717 41 ACGGGTTGCTTCCCCCGCTGCGAGGTAATTCCTCCCCTGGG ACGGGTTGCTTCCCCCTCTGCGAGGTAATTCCTCCCCTGGG < 41bp 1 0.63171767940009 1 0.821529448032379 experiment 0.73656464119982 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RARA ENSG00000131759 UTR5 Human protein_coding chr17:38474697 chr17:38474693 . . 0 17 hm5C_associated_SNPs_12433 0 0 1 0 1 chromatin 1 0.500231643921102 0.356941103935242 0.999536712157796 hm5C_site_14447 DeepMRMD:0.356941103935242;iRNA_m5C:0.999536712157796 14448 chr17 38487417 38487417 1 + C A rs574319362 38487428 + 38487408 38487448 41 TCTGAAGCCCACCAGAGCCCCCTGCCAGACTGTCTGCCTCC TCTGAAGCCAACCAGAGCCCCCTGCCAGACTGTCTGCCTCC < 41bp 1 0.0508128397679235 1 0.129522621631622 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RARA ENSG00000131759 UTR5 Human protein_coding chr17:38487428 chr17:38487417 . . 0 10 hm5C_associated_SNPs_12434 0 0 0 0 0 chromatin 1 0.500232409679287 1 0.999535180641426 hm5C_site_14448 DeepMRMD:1;iRNA_m5C:0.999535180641426 14449 chr17 38487443 38487443 1 + G A rs144842676 38487428 + 38487408 38487448 41 TCTGAAGCCCACCAGAGCCCCCTGCCAGACTGTCTGCCTCC TCTGAAGCCCACCAGAGCCCCCTGCCAGACTGTCTACCTCC < 41bp 1 0.0496387959889668 1 0.0723441243171692 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RARA ENSG00000131759 UTR5 Human protein_coding chr17:38487428 chr17:38487443 . . 0 36 hm5C_associated_SNPs_12435 0 0 1 0 0 chromatin 1 0.5002316439284 1 0.9995367121432 hm5C_site_14449 DeepMRMD:1;iRNA_m5C:0.9995367121432 14450 chr17 38498815 38498815 1 + G A rs549723980 38498820 + 38498800 38498840 41 ACTTCAGGGCAGGGGGCGCCCCCTGCCCGGGTCACCAGTCG ACTTCAGGGCAGGGGACGCCCCCTGCCCGGGTCACCAGTCG < 41bp 1 0.414881861302344 1 0.0828461647033691 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RARA-AS1 ENSG00000265666 ncRNA_exonic Human antisense chr17:38498820 chr17:38498815 . . 0 16 hm5C_associated_SNPs_12437 0 0 0 0 0 unknown 1 0.500231643857422 1 0.999536712285157 hm5C_site_14450 DeepMRMD:1;iRNA_m5C:0.999536712285157 14451 chr17 38498815 38498815 1 + G A rs549723980 38498821 + 38498801 38498841 41 CTTCAGGGCAGGGGGCGCCCCCTGCCCGGGTCACCAGTCGG CTTCAGGGCAGGGGACGCCCCCTGCCCGGGTCACCAGTCGG < 41bp 1 0.233227938316609 1 0.089909166097641 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RARA-AS1 ENSG00000265666 ncRNA_exonic Human antisense chr17:38498821 chr17:38498815 . . 0 15 hm5C_associated_SNPs_12438 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14451 DeepMRMD:1;iRNA_m5C:0.999536712157815 14452 chr17 38498815 38498815 1 + G A rs549723980 38498822 + 38498802 38498842 41 TTCAGGGCAGGGGGCGCCCCCTGCCCGGGTCACCAGTCGGG TTCAGGGCAGGGGACGCCCCCTGCCCGGGTCACCAGTCGGG < 41bp 1 0.378463496315725 1 0.0413452684879303 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RARA-AS1 ENSG00000265666 ncRNA_exonic Human antisense chr17:38498822 chr17:38498815 . . 0 14 hm5C_associated_SNPs_12439 0 0 0 0 0 unknown 1 0.500231643921033 1 0.999536712157933 hm5C_site_14452 DeepMRMD:1;iRNA_m5C:0.999536712157933 14453 chr17 38498815 38498815 1 + G A rs549723980 38498825 + 38498805 38498845 41 AGGGCAGGGGGCGCCCCCTGCCCGGGTCACCAGTCGGGGCG AGGGCAGGGGACGCCCCCTGCCCGGGTCACCAGTCGGGGCG < 41bp 1 0.623348491024198 1 0.622543752193451 experiment 0.753303017951604 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RARA-AS1 ENSG00000265666 ncRNA_exonic Human antisense chr17:38498825 chr17:38498815 . . 0 11 hm5C_associated_SNPs_12440 0 0 0 0 0 unknown 1 0.500231643921092 0.754912495613098 0.999536712157815 hm5C_site_14453 DeepMRMD:0.754912495613098;iRNA_m5C:0.999536712157815 14454 chr17 38498815 38498815 1 + G A rs549723980 38498826 + 38498806 38498846 41 GGGCAGGGGGCGCCCCCTGCCCGGGTCACCAGTCGGGGCGA GGGCAGGGGACGCCCCCTGCCCGGGTCACCAGTCGGGGCGA < 41bp 1 0.666012464054786 1 0.760174930095673 experiment 0.667975071890428 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RARA-AS1 ENSG00000265666 ncRNA_exonic Human antisense chr17:38498826 chr17:38498815 . . 0 10 hm5C_associated_SNPs_12441 0 0 0 0 0 unknown 1 0.500231643921093 0.479650139808654 0.999536712157815 hm5C_site_14454 DeepMRMD:0.479650139808654;iRNA_m5C:0.999536712157815 14455 chr17 38498975 38498975 1 + G T rs149514124 38498984 + 38498964 38499004 41 AGAGTGTAGAAGTGGGGGGTCCCACCCCTAATCCCTTCCTA AGAGTGTAGAATTGGGGGGTCCCACCCCTAATCCCTTCCTA < 41bp 1 0.0339964124053815 1 0.123112350702286 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RARA ENSG00000131759 CDS Human protein_coding chr17:38498984 chr17:38498975 nonsynonymous SNV 0.998 2 12 hm5C_associated_SNPs_12443 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14455 DeepMRMD:1;iRNA_m5C:0.999536712157815 14456 chr17 38512763 38512763 1 + G A rs536667337 38512760 + 38512740 38512780 41 TCAGGATGGGTCCTGGGGGCCTCGTGTTCATCAAGACACCC TCAGGATGGGTCCTGGGGGCCTCATGTTCATCAAGACACCC < 41bp 1 0.225674802014693 1 0.103575468063354 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARA ENSG00000131759 UTR3 Human protein_coding chr17:38512760 chr17:38512763 . . 0 24 hm5C_associated_SNPs_12444 0 0 1 0 0 chromatin 1 0.500230882832646 1 0.999538234334708 hm5C_site_14456 DeepMRMD:1;iRNA_m5C:0.999538234334708 14457 chr17 39845231 39845231 1 + C T rs560903919 39845224 + 39845204 39845244 41 TTCCGTTCCCCCCTGCCCGCCTTCTCCCGCCACCGCCGCCG TTCCGTTCCCCCCTGCCCGCCTTCTCCTGCCACCGCCGCCG < 41bp 1 0.272283998753735 1 0.0860216021537781 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF1 ENSG00000173812 UTR5 Human protein_coding chr17:39845224 chr17:39845231 . . 0 28 hm5C_associated_SNPs_12445 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_14457 DeepMRMD:1;iRNA_m5C:0.999536712157816 14458 chr17 39845231 39845231 1 + C T rs560903919 39845245 + 39845225 39845265 41 TTCTCCCGCCACCGCCGCCGCCGCCTTCCGCAGGCCGTTTC TTCTCCTGCCACCGCCGCCGCCGCCTTCCGCAGGCCGTTTC < 41bp 1 0.486478886080751 1 0.0641334354877472 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF1 ENSG00000173812 UTR5 Human protein_coding chr17:39845245 chr17:39845231 . . 0 7 hm5C_associated_SNPs_12446 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643602859 1 0.999536712794282 hm5C_site_14458 DeepMRMD:1;iRNA_m5C:0.999536712794282 14459 chr17 39975563 39975563 1 + C A rs138089753 39975559 + 39975539 39975579 41 CAGCTAGAGACGCTGGAGCTCCCCCCCGGCTGTGTCCGCAG CAGCTAGAGACGCTGGAGCTCCCCACCGGCTGTGTCCGCAG < 41bp 1 0.619620907422826 1 0.763517260551453 experiment 0.760758185154349 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39975559 chr17:39975563 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_12447 0 0 1 0 1 Nucleus 1 0.500231789834692 0.472965478897094 0.999536420330617 hm5C_site_14459 DeepMRMD:0.472965478897094;iRNA_m5C:0.999536420330617 14460 chr17 39976262 39976262 1 + T C rs137869582 39976269 + 39976249 39976289 41 AGTGGGCAAGCCATGCTGATCCGCAGGGTAAGTTACTGGGA AGTGGGCAAGCCACGCTGATCCGCAGGGTAAGTTACTGGGA < 41bp 1 0.422378973546544 1 0.227570563554764 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39976269 chr17:39976262 synonymous SNV . 0 14 hm5C_associated_SNPs_12448 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14460 DeepMRMD:1;iRNA_m5C:0.999536712157815 14461 chr17 39976271 39976271 1 + G A rs7221862 39976269 + 39976249 39976289 41 AGTGGGCAAGCCATGCTGATCCGCAGGGTAAGTTACTGGGA AGTGGGCAAGCCATGCTGATCCACAGGGTAAGTTACTGGGA < 41bp 1 0.277012797219931 1 0.26714700460434 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39976269 chr17:39976271 synonymous SNV . 0 23 hm5C_associated_SNPs_12449 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14461 DeepMRMD:1;iRNA_m5C:0.999536712157815 14462 chr17 39978052 39978052 1 + G A rs76022961 39978062 + 39978042 39978082 41 CAAGGATGGCGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT CAAGGATGGCAAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT < 41bp 1 0.545375225382018 1 0.667374908924103 experiment 0.909249549235964 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39978062 chr17:39978052 nonsynonymous SNV 0.626 0 11 hm5C_associated_SNPs_12450 0 0 1 0 1 Nucleus 1 0.500231643921081 0.665250182151794 0.999536712157838 hm5C_site_14462 DeepMRMD:0.665250182151794;iRNA_m5C:0.999536712157838 14463 chr17 40169612 40169612 1 + C T rs565075713 40169624 - 40169604 40169644 41 CGGCACAGCCCCTGGGCTCCCGCCCCGGCGCGGAGACCACC CGGCACAGCCCCTGGGCTCCCGCCCCGGCGCGAAGACCACC < 41bp 1 0.693515419095161 1 0.278097331523895 experiment 0.612969161809678 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNAJC7;NKIRAS2 ENSG00000168256;ENSG00000168259 UTR5 Human other chr17:40169624 chr17:40169612 . . 0 33 hm5C_associated_SNPs_12454 0 0 0 0 0 unknown 1 0.500231643920998 1 0.999536712158005 hm5C_site_14463 DeepMRMD:1;iRNA_m5C:0.999536712158005 14464 chr17 40169612 40169612 1 + C T rs565075713 40169625 - 40169605 40169645 41 CCGGCACAGCCCCTGGGCTCCCGCCCCGGCGCGGAGACCAC CCGGCACAGCCCCTGGGCTCCCGCCCCGGCGCGAAGACCAC < 41bp 1 0.327320857106919 1 0.347757339477539 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNAJC7;NKIRAS2 ENSG00000168256;ENSG00000168259 UTR5 Human other chr17:40169625 chr17:40169612 . . 0 34 hm5C_associated_SNPs_12455 0 0 0 0 0 unknown 1 0.500231643921037 1 0.999536712157927 hm5C_site_14464 DeepMRMD:1;iRNA_m5C:0.999536712157927 14465 chr17 40169612 40169612 1 + C T rs565075713 40169626 - 40169606 40169646 41 ACCGGCACAGCCCCTGGGCTCCCGCCCCGGCGCGGAGACCA ACCGGCACAGCCCCTGGGCTCCCGCCCCGGCGCGAAGACCA < 41bp 1 0.570983508180884 1 0.183871358633041 experiment 0.858032983638233 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC7;NKIRAS2 ENSG00000168256;ENSG00000168259 UTR5 Human other chr17:40169626 chr17:40169612 . . 0 35 hm5C_associated_SNPs_12456 0 0 0 0 0 unknown 1 0.500231643920584 1 0.999536712158832 hm5C_site_14465 DeepMRMD:1;iRNA_m5C:0.999536712158832 14466 chr17 40169620 40169620 1 + G T rs35468867 40169622 - 40169602 40169642 41 GCACAGCCCCTGGGCTCCCGCCCCGGCGCGGAGACCACCGT GCACAGCCCCTGGGCTCCCGCCACGGCGCGGAGACCACCGT < 41bp 1 0.669022159894188 1 0.586140811443329 experiment 0.661955680211624 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNAJC7;NKIRAS2 ENSG00000168256;ENSG00000168259 UTR5 Human other chr17:40169622 chr17:40169620 . . 0 23 hm5C_associated_SNPs_12457 0 0 0 0 0 unknown 1 0.500231643921092 0.827718377113342 0.999536712157815 hm5C_site_14466 DeepMRMD:0.827718377113342;iRNA_m5C:0.999536712157815 14467 chr17 40169620 40169620 1 + G T rs35468867 40169625 - 40169605 40169645 41 CCGGCACAGCCCCTGGGCTCCCGCCCCGGCGCGGAGACCAC CCGGCACAGCCCCTGGGCTCCCGCCACGGCGCGGAGACCAC < 41bp 1 0.38400102870042 1 0.311639815568924 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNAJC7;NKIRAS2 ENSG00000168256;ENSG00000168259 UTR5 Human other chr17:40169625 chr17:40169620 . . 0 26 hm5C_associated_SNPs_12458 0 0 0 0 0 unknown 1 0.500231643853837 1 0.999536712292327 hm5C_site_14467 DeepMRMD:1;iRNA_m5C:0.999536712292327 14468 chr17 40169620 40169620 1 + G T rs35468867 40169626 - 40169606 40169646 41 ACCGGCACAGCCCCTGGGCTCCCGCCCCGGCGCGGAGACCA ACCGGCACAGCCCCTGGGCTCCCGCCACGGCGCGGAGACCA < 41bp 1 0.613908240750974 1 0.300885081291199 experiment 0.772183518498052 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC7;NKIRAS2 ENSG00000168256;ENSG00000168259 UTR5 Human other chr17:40169626 chr17:40169620 . . 0 27 hm5C_associated_SNPs_12459 0 0 0 0 0 unknown 1 0.500231643921087 1 0.999536712157827 hm5C_site_14468 DeepMRMD:1;iRNA_m5C:0.999536712157827 14469 chr17 40459629 40459629 1 + G C rs191983922 40459614 + 40459594 40459634 41 ATGCTCCGTGCACCCAGGGCCATCCTAGGTTTTGTGAATAA ATGCTCCGTGCACCCAGGGCCATCCTAGGTTTTGTCAATAA < 41bp 1 0.0408104161649799 1 0.0707267820835114 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAT5A ENSG00000126561 CDS Human protein_coding chr17:40459614 chr17:40459629 synonymous SNV . 0 36 hm5C_associated_SNPs_12462 0 0 1 0 1 Ribosome 1 0.500231643921098 1 0.999536712157805 hm5C_site_14469 DeepMRMD:1;iRNA_m5C:0.999536712157805 14470 chr17 40459668 40459668 1 + C A rs185687915 40459677 + 40459657 40459697 41 ATCAACAAGCCCGACGGGACCTTCTTGTTGCGCTTTAGTGA ATCAACAAGCCAGACGGGACCTTCTTGTTGCGCTTTAGTGA < 41bp 1 0.136709967509771 1 0.0378362834453583 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAT5A ENSG00000126561 CDS Human protein_coding chr17:40459677 chr17:40459668 synonymous SNV . 0 12 hm5C_associated_SNPs_12463 0 0 1 0 2 Ribosome 1 0.500231429912981 1 0.999537140174037 hm5C_site_14470 DeepMRMD:1;iRNA_m5C:0.999537140174037 14471 chr17 40704634 40704634 1 + A G rs6413434 40704649 - 40704629 40704669 41 CCCCTGGGTATGCCTCTGTGCCACAGGAGCGATTATAGTGA CCCCTGGGTATGCCTCTGTGCCACAGGAGCGATTACAGTGA < 41bp 1 0.332442869815121 1 0.138685822486877 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOC108783654 ENSG00000266962 ncRNA_exonic Human antisense chr17:40704649 chr17:40704634 . . 0 36 hm5C_associated_SNPs_12464 0 0 0 0 0 unknown 1 0.500231643921085 1 0.99953671215783 hm5C_site_14471 DeepMRMD:1;iRNA_m5C:0.99953671215783 14472 chr17 40714721 40714721 1 + C T rs145723983 40714704 + 40714684 40714724 41 TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCG TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACTTCG < 41bp 1 0.505556060267929 1 0.255551010370255 experiment 0.988887879464141 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40714704 chr17:40714721 synonymous SNV . 0 38 hm5C_associated_SNPs_12465 1 0 1 0 1 Ribosome 1 0.500231653570895 1 0.99953669285821 hm5C_site_14472 DeepMRMD:1;iRNA_m5C:0.99953669285821 not specified not specified 14473 chr17 40716080 40716080 1 + C T rs143964295 40716079 + 40716059 40716099 41 TCCTTGACTTTTGATGTCATCCCCCTGCTGGACCCCTATGG TCCTTGACTTTTGATGTCATCTCCCTGCTGGACCCCTATGG < 41bp 1 0.459790470731259 1 0.54792445898056 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40716079 chr17:40716080 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_12466 0 0 1 0 0 Ribosome 1 0.500231643921355 0.90415108203888 0.99953671215729 hm5C_site_14473 DeepMRMD:0.90415108203888;iRNA_m5C:0.99953671215729 14474 chr17 40765986 40765986 1 + C G rs147337786 40765994 + 40765974 40766014 41 CTTCCTCATGACCGGCTACACCCCTCTCACTACGGACCAGT CTTCCTCATGACGGGCTACACCCCTCTCACTACGGACCAGT < 41bp 1 0.230143116648463 1 0.0227575600147247 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765994 chr17:40765986 synonymous SNV . 0 13 hm5C_associated_SNPs_12467 0 0 1 0 1 Ribosome 1 0.500231643921351 1 0.999536712157299 hm5C_site_14474 DeepMRMD:1;iRNA_m5C:0.999536712157299 14475 chr17 40817764 40817764 1 + C T rs188631864 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATTGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC < 41bp 1 0.345930767593925 1 0.041000097990036 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817764 synonymous SNV . 0 5 hm5C_associated_SNPs_12469 0 0 0 0 2 Cytosol 1 0.500231752303421 1 0.999536495393157 hm5C_site_14475 DeepMRMD:1;iRNA_m5C:0.999536495393157 14476 chr17 40931092 40931092 1 + G A rs139710182 40931095 + 40931075 40931115 41 CAAGTTCTTCTAGCAGGGACCTGTCTCCCTTTACTTCTTAC CAAGTTCTTCTAGCAGGAACCTGTCTCCCTTTACTTCTTAC < 41bp 1 0.224083567518477 1 0.182038128376007 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS25 ENSG00000131475 UTR3 Human protein_coding chr17:40931095 chr17:40931092 . . 0 18 hm5C_associated_SNPs_12471 0 0 1 0 0 Ribosome 1 0.500231643932723 1 0.999536712134554 hm5C_site_14476 DeepMRMD:1;iRNA_m5C:0.999536712134554 14477 chr17 40932955 40932955 1 + C A rs61754326 40932967 + 40932947 40932987 41 CTCACCCGCTCCGGACCCCCCCGATCCTCCGGACTCCGCTG CTCACCCGATCCGGACCCCCCCGATCCTCCGGACTCCGCTG < 41bp 1 0.279263043673228 1 0.292570233345032 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WNK4 ENSG00000126562 CDS Human protein_coding chr17:40932967 chr17:40932955 nonsynonymous SNV 0.008 1 9 hm5C_associated_SNPs_12472 1 0 0 0 0 chromatin 1 0.500230544009569 1 0.999538911980863 hm5C_site_14477 DeepMRMD:1;iRNA_m5C:0.999538911980863 Pseudohypoaldosteronism, type 2 Pseudohypoaldosteronism, type 2 14478 chr17 40985579 40985579 1 + C T rs11542143 40985592 + 40985572 40985612 41 TCAGGTCCCTCCGGCCCCCTCCCTGGAGTCCACAGCGCCTC TCAGGTCTCTCCGGCCCCCTCCCTGGAGTCCACAGCGCCTC < 41bp 1 0.504659312876743 1 0.189332008361816 experiment 0.990681374246514 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSME3 ENSG00000131467 UTR5 Human protein_coding chr17:40985592 chr17:40985579 . . 0 8 hm5C_associated_SNPs_12473 0 0 1 0 0 Cytosol 1 0.500231647047699 1 0.999536705904602 hm5C_site_14478 DeepMRMD:1;iRNA_m5C:0.999536705904602 14479 chr17 41154748 41154748 1 + C A rs191256004 41154768 + 41154748 41154788 41 CCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA ACTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA < 41bp 1 0.269982286460596 1 0.43557271361351 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154768 chr17:41154748 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_12474 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14479 DeepMRMD:1;iRNA_m5C:0.999536712157815 14480 chr17 41296958 41296958 1 + T C rs572319366 41296945 + 41296925 41296965 41 CACACCGCGGCCAGCAGGCACCTGGCACCCACCTTCCCTGC CACACCGCGGCCAGCAGGCACCTGGCACCCACCCTCCCTGC < 41bp 1 0.429230253171857 1 0.36295211315155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBR2 ENSG00000198496 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:41296945 chr17:41296958 . . 0 34 hm5C_associated_SNPs_12475 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14480 DeepMRMD:1;iRNA_m5C:0.999536712157815 14481 chr17 41348524 41348524 1 + C T rs368143342 41348532 + 41348512 41348552 41 ATGTCTCCTCTGCCACATGACAGTCCTTTAATAGAGAAGCC ATGTCTCCTCTGTCACATGACAGTCCTTTAATAGAGAAGCC < 41bp 1 0.150416758736768 1 0.190945446491241 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348532 chr17:41348524 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_12476 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14481 DeepMRMD:1;iRNA_m5C:0.999536712157815 14482 chr17 41477093 41477093 1 + A G rs115054688 41477110 + 41477090 41477130 41 CTTAGCTCACTATGGGGAACCACTTGACTGAGATGGCGCCC CTTGGCTCACTATGGGGAACCACTTGACTGAGATGGCGCCC < 41bp 1 0.412923219122731 1 0.188425570726395 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ARL4D ENSG00000175906 UTR5 Human protein_coding chr17:41477110 chr17:41477093 . . 0 4 hm5C_associated_SNPs_12477 0 0 1 0 1 Cytosol 1 0.500231643921135 1 0.999536712157731 hm5C_site_14482 DeepMRMD:1;iRNA_m5C:0.999536712157731 14483 chr17 42085972 42085972 1 + C A rs186636 42085966 + 42085946 42085986 41 CCAGCTTCTGACCCAGGCAGCTGACCCTCACCATGGACACT CCAGCTTCTGACCCAGGCAGCTGACCATCACCATGGACACT < 41bp 1 0.113628311253499 1 0.112264811992645 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAGS ENSG00000161653 UTR3 Human protein_coding chr17:42085966 chr17:42085972 . . 0 27 hm5C_associated_SNPs_12478 0 0 0 1 0 Cytosol 1 0.500231633846113 1 0.999536732307775 hm5C_site_14483 DeepMRMD:1;iRNA_m5C:0.999536732307775 14484 chr17 42225446 42225446 1 + G A rs199910134 42225441 + 42225421 42225461 41 TCCAGCACGCCCAGTGCTGACAGCCGTCCATCATGCATAGG TCCAGCACGCCCAGTGCTGACAGCCATCCATCATGCATAGG < 41bp 1 0.419294704791375 1 0.0438823103904724 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225441 chr17:42225446 nonsynonymous SNV 0.000 1 26 hm5C_associated_SNPs_12479 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14484 DeepMRMD:1;iRNA_m5C:0.999536712157815 14485 chr17 42225446 42225446 1 + G A rs199910134 42225444 + 42225424 42225464 41 AGCACGCCCAGTGCTGACAGCCGTCCATCATGCATAGGAGC AGCACGCCCAGTGCTGACAGCCATCCATCATGCATAGGAGC < 41bp 1 0.0226271948329916 1 0.39317786693573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225444 chr17:42225446 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_12480 0 0 1 0 0 chromatin 1 0.500234159443579 1 0.999531681112843 hm5C_site_14485 DeepMRMD:1;iRNA_m5C:0.999531681112843 14486 chr17 42225451 42225451 1 + T G rs202187285 42225441 + 42225421 42225461 41 TCCAGCACGCCCAGTGCTGACAGCCGTCCATCATGCATAGG TCCAGCACGCCCAGTGCTGACAGCCGTCCAGCATGCATAGG < 41bp 1 0.547813133575294 1 0.136227011680603 experiment 0.904373732849411 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225441 chr17:42225451 nonsynonymous SNV 0.001 0 31 hm5C_associated_SNPs_12481 0 0 1 0 0 chromatin 1 0.500231643918907 1 0.999536712162187 hm5C_site_14486 DeepMRMD:1;iRNA_m5C:0.999536712162187 14487 chr17 42225451 42225451 1 + T G rs202187285 42225444 + 42225424 42225464 41 AGCACGCCCAGTGCTGACAGCCGTCCATCATGCATAGGAGC AGCACGCCCAGTGCTGACAGCCGTCCAGCATGCATAGGAGC < 41bp 1 0.045770295077473 1 0.335958391427994 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225444 chr17:42225451 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_12482 0 0 1 0 0 chromatin 1 0.50023055815824 1 0.99953888368352 hm5C_site_14487 DeepMRMD:1;iRNA_m5C:0.99953888368352 14488 chr17 42264623 42264623 1 + A G rs367649898 42264626 + 42264606 42264646 41 TGTGACCCCCTTAGCCGACCCTACTCCTCACTGGCCGGGAC TGTGACCCCCTTAGCCGGCCCTACTCCTCACTGGCCGGGAC < 41bp 1 0.181378731337235 1 0.0664810538291931 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMUB2 ENSG00000168591 UTR5 Human protein_coding chr17:42264626 chr17:42264623 . . 0 18 hm5C_associated_SNPs_12483 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_14488 DeepMRMD:1;iRNA_m5C:0.999536712157815 14489 chr17 42635662 42635662 1 + G A rs200498423 42635648 + 42635628 42635668 41 GCTACGCCACGCTGGAGCACCCCTTCCACTGCCCGCGCGTC GCTACGCCACGCTGGAGCACCCCTTCCACTGCCCACGCGTC < 41bp 1 0.104506773144385 1 0.054285079240799 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZD2 ENSG00000180340 CDS Human protein_coding chr17:42635648 chr17:42635662 synonymous SNV . 0 35 hm5C_associated_SNPs_12484 0 0 0 0 0 exosome 1 0.500231706806003 1 0.999536586387995 hm5C_site_14489 DeepMRMD:1;iRNA_m5C:0.999536586387995 14490 chr17 42857430 42857430 1 + G A rs35504352 42857429 + 42857409 42857449 41 GCCACAGCTCAACTCGGGGGCGCCTGGAGGGATGCCCCCAG GCCACAGCTCAACTCGGGGGCACCTGGAGGGATGCCCCCAG < 41bp 1 0.530645587410952 1 0.320081472396851 experiment 0.938708825178097 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAM11 ENSG00000073670 UTR3 Human protein_coding chr17:42857429 chr17:42857430 . . 0 22 hm5C_associated_SNPs_12485 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14490 DeepMRMD:1;iRNA_m5C:0.999536712157815 14491 chr17 42857430 42857430 1 + G A rs35504352 42857443 + 42857423 42857463 41 CGGGGGCGCCTGGAGGGATGCCCCCAGGCAGCCACCAGTGG CGGGGGCACCTGGAGGGATGCCCCCAGGCAGCCACCAGTGG < 41bp 1 0.222251991043652 1 0.0522654950618744 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAM11 ENSG00000073670 UTR3 Human protein_coding chr17:42857443 chr17:42857430 . . 0 8 hm5C_associated_SNPs_12486 0 0 0 0 0 chromatin 1 0.500231643917256 1 0.999536712165489 hm5C_site_14491 DeepMRMD:1;iRNA_m5C:0.999536712165489 14492 chr17 42857430 42857430 1 + G A rs35504352 42857444 + 42857424 42857464 41 GGGGGCGCCTGGAGGGATGCCCCCAGGCAGCCACCAGTGGA GGGGGCACCTGGAGGGATGCCCCCAGGCAGCCACCAGTGGA < 41bp 1 0.567100160440968 1 0.134763330221176 experiment 0.865799679118064 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAM11 ENSG00000073670 UTR3 Human protein_coding chr17:42857444 chr17:42857430 . . 0 7 hm5C_associated_SNPs_12487 0 0 0 0 0 chromatin 1 0.500231643920455 1 0.999536712159089 hm5C_site_14492 DeepMRMD:1;iRNA_m5C:0.999536712159089 14493 chr17 42857430 42857430 1 + G A rs35504352 42857445 + 42857425 42857465 41 GGGGCGCCTGGAGGGATGCCCCCAGGCAGCCACCAGTGGAC GGGGCACCTGGAGGGATGCCCCCAGGCAGCCACCAGTGGAC < 41bp 1 0.468104992393635 1 0.29698246717453 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAM11 ENSG00000073670 UTR3 Human protein_coding chr17:42857445 chr17:42857430 . . 0 6 hm5C_associated_SNPs_12488 0 0 0 0 0 chromatin 1 0.500231643915882 1 0.999536712168236 hm5C_site_14493 DeepMRMD:1;iRNA_m5C:0.999536712168236 14494 chr17 42857430 42857430 1 + G A rs35504352 42857446 + 42857426 42857466 41 GGGCGCCTGGAGGGATGCCCCCAGGCAGCCACCAGTGGACC GGGCACCTGGAGGGATGCCCCCAGGCAGCCACCAGTGGACC < 41bp 1 0.526090936195551 1 0.35861474275589 experiment 0.947818127608899 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAM11 ENSG00000073670 UTR3 Human protein_coding chr17:42857446 chr17:42857430 . . 0 5 hm5C_associated_SNPs_12489 0 0 0 0 0 chromatin 1 0.500231643920946 1 0.999536712158109 hm5C_site_14494 DeepMRMD:1;iRNA_m5C:0.999536712158109 14495 chr17 42857430 42857430 1 + G A rs35504352 42857447 + 42857427 42857467 41 GGCGCCTGGAGGGATGCCCCCAGGCAGCCACCAGTGGACCT GGCACCTGGAGGGATGCCCCCAGGCAGCCACCAGTGGACCT < 41bp 1 0.609224168679234 1 0.833248853683472 experiment 0.781551662641532 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAM11 ENSG00000073670 UTR3 Human protein_coding chr17:42857447 chr17:42857430 . . 0 4 hm5C_associated_SNPs_12490 0 0 0 0 0 chromatin 1 0.500231643921092 0.333502292633056 0.999536712157815 hm5C_site_14495 DeepMRMD:0.333502292633056;iRNA_m5C:0.999536712157815 14496 chr17 42857538 42857538 1 + C T rs73984073 42857543 + 42857523 42857563 41 TGGGACCTAGGGGGACGGGGCTGACATCTACATTTTTTAAA TGGGACCTAGGGGGATGGGGCTGACATCTACATTTTTTAAA < 41bp 1 0.157146564475904 1 0.0360425710678101 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADAM11 ENSG00000073670 UTR3 Human protein_coding chr17:42857543 chr17:42857538 . . 0 16 hm5C_associated_SNPs_12491 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14496 DeepMRMD:1;iRNA_m5C:0.999536712157815 14497 chr17 43220908 43220908 1 + C A rs115456393 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TCGTCGTCCAGTGGCTATTCCGAATGTTTCGGACCCAAAAG < 41bp 1 0.409061864941208 1 0.856917500495911 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220908 nonsynonymous SNV 0.998 2 17 hm5C_associated_SNPs_12492 0 0 1 0 1 Cytosol 1 0.500231643881658 0.286164999008178 0.999536712236684 hm5C_site_14497 DeepMRMD:0.286164999008178;iRNA_m5C:0.999536712236684 14498 chr17 43220921 43220921 1 + C T rs35205304 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TCGTCGTCCAGTGGCTCTTCCGAATGTTTTGGACCCAAAAG < 41bp 1 0.349189381073358 1 0.786548495292664 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220921 nonsynonymous SNV 0.996 3 30 hm5C_associated_SNPs_12493 0 0 1 0 0 Cytosol 1 0.500231643921182 0.426903009414672 0.999536712157636 hm5C_site_14498 DeepMRMD:0.426903009414672;iRNA_m5C:0.999536712157636 14499 chr17 43229247 43229247 1 + T C rs552757269 43229227 + 43229207 43229247 41 CCCTCCCATTAGGAAGCATGCTTTTGCAGTTAAATGGCGAT CCCTCCCATTAGGAAGCATGCTTTTGCAGTTAAATGGCGAC < 41bp 1 0.217686283980036 1 0.0440614819526672 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEXIM1 ENSG00000224505 ncRNA_intronic Human antisense chr17:43229227 chr17:43229247 . . 0 41 hm5C_associated_SNPs_12494 0 0 1 0 0 Ribosome 1 0.500231642616256 1 0.999536714767487 hm5C_site_14499 DeepMRMD:1;iRNA_m5C:0.999536714767487 14500 chr17 43311739 43311739 1 + A C rs148012563 43311752 + 43311732 43311772 41 AGAAGCCATCAGGGGTGGGGCTGGGTGCTGTGGCTCATGCC AGAAGCCCTCAGGGGTGGGGCTGGGTGCTGTGGCTCATGCC < 41bp 1 0.419907495606791 1 0.713801622390747 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control FMNL1 ENSG00000184922 intronic Human protein_coding chr17:43311752 chr17:43311739 . . 0 8 hm5C_associated_SNPs_12495 0 0 0 2 0 chromatin 1 0.500231643921093 0.572396755218506 0.999536712157814 hm5C_site_14500 DeepMRMD:0.572396755218506;iRNA_m5C:0.999536712157814 14501 chr17 43317988 43317988 1 + C A rs146321570 43317975 + 43317955 43317995 41 TGGAGCACATGGAGGAACTGCAGGAGCAAGTGGCGCTGGTG TGGAGCACATGGAGGAACTGCAGGAGCAAGTGGAGCTGGTG < 41bp 1 0.688821175445931 1 0.55074542760849 experiment 0.622357649108138 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43317975 chr17:43317988 nonsynonymous SNV 0.290 2 34 hm5C_associated_SNPs_12496 0 0 1 0 1 chromatin 1 0.500231643921092 0.89850914478302 0.999536712157815 hm5C_site_14501 DeepMRMD:0.89850914478302;iRNA_m5C:0.999536712157815 14502 chr17 44834393 44834393 1 + A G rs181109040 44834373 + 44834353 44834393 41 GTGCCTCTCTCTCCCAACTGCTGCTTAAAATGCAAGGACAA GTGCCTCTCTCTCCCAACTGCTGCTTAAAATGCAAGGACAG < 41bp 1 0.434026381684048 1 0.44599261879921 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control NSF ENSG00000073969 UTR3 Human protein_coding chr17:44834373 chr17:44834393 . . 0 41 hm5C_associated_SNPs_12498 0 0 0 2 0 Ribosome 1 0.500231643999887 1 0.999536712000226 hm5C_site_14502 DeepMRMD:1;iRNA_m5C:0.999536712000226 14503 chr17 45727506 45727506 1 + C T rs528396319 45727511 + 45727491 45727531 41 CCGCCCCCCACCCCACCCTCCCTTCCCACCCGACCCCCAAC CCGCCCCCCACCCCATCCTCCCTTCCCACCCGACCCCCAAC < 41bp 1 0.122302833410951 1 0.183113634586334 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KPNB1 ENSG00000108424 UTR5 Human protein_coding chr17:45727511 chr17:45727506 . . 0 16 hm5C_associated_SNPs_12499 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14503 DeepMRMD:1;iRNA_m5C:0.999536712157815 14504 chr17 45727506 45727506 1 + C T rs528396319 45727512 + 45727492 45727532 41 CGCCCCCCACCCCACCCTCCCTTCCCACCCGACCCCCAACC CGCCCCCCACCCCATCCTCCCTTCCCACCCGACCCCCAACC < 41bp 1 0.299966840701873 1 0.123752653598785 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KPNB1 ENSG00000108424 UTR5 Human protein_coding chr17:45727512 chr17:45727506 . . 0 15 hm5C_associated_SNPs_12500 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14504 DeepMRMD:1;iRNA_m5C:0.999536712157815 14505 chr17 45773467 45773467 1 + C A rs145958867 45773473 + 45773453 45773493 41 GTGTGGGCCGCGGCCCGGCCCTCACCATGGAGTCCATGTTC GTGTGGGCCGCGGCACGGCCCTCACCATGGAGTCCATGTTC < 41bp 1 0.461692091810324 1 0.116081207990646 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBKBP1 ENSG00000198933 UTR5 Human protein_coding chr17:45773473 chr17:45773467 . . 0 15 hm5C_associated_SNPs_12501 0 0 1 0 0 Cytosol 1 0.500230239723738 1 0.999539520552524 hm5C_site_14505 DeepMRMD:1;iRNA_m5C:0.999539520552524 14506 chr17 45786519 45786519 1 + G A rs369896558 45786508 + 45786488 45786528 41 TGAGCTGGCGGAGGGCGCGGCCTACGCGGGCGCCTCCCCGC TGAGCTGGCGGAGGGCGCGGCCTACGCGGGCACCTCCCCGC < 41bp 1 0.113635194180924 1 0.195717841386795 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBKBP1 ENSG00000198933 CDS Human protein_coding chr17:45786508 chr17:45786519 nonsynonymous SNV 0.057 0 32 hm5C_associated_SNPs_12502 0 0 1 0 0 Cytosol 1 0.500228992427015 1 0.99954201514597 hm5C_site_14506 DeepMRMD:1;iRNA_m5C:0.99954201514597 14507 chr17 46025299 46025299 1 + C T rs145323612 46025293 + 46025273 46025313 41 GCTGGGATTACAGACATGAGCCACCACGCTTGGCCGGGATA GCTGGGATTACAGACATGAGCCACCATGCTTGGCCGGGATA < 41bp 1 0.358260737587045 1 0.0738276243209839 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PNPO ENSG00000264019 ncRNA_exonic Human antisense chr17:46025293 chr17:46025299 . . 0 27 hm5C_associated_SNPs_12503 1 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14507 DeepMRMD:1;iRNA_m5C:0.999536712157815 Pyridoxal 5'-phosphate-dependent epilepsy Pyridoxal 5'-phosphate-dependent epilepsy 14508 chr17 46058901 46058901 1 + C T rs112342224 46058895 + 46058875 46058915 41 CCGTGTTCTTGCCTGCCCATCTTCTCCGCTTTTGGGATGAA CCGTGTTCTTGCCTGCCCATCTTCTCTGCTTTTGGGATGAA < 41bp 1 0.114564513849748 1 0.105311751365662 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK5RAP3 ENSG00000264701 ncRNA_intronic Human antisense chr17:46058895 chr17:46058901 . . 0 27 hm5C_associated_SNPs_12504 0 0 1 1 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14508 DeepMRMD:1;iRNA_m5C:0.999536712157815 14509 chr17 46058901 46058901 1 + C T rs112342224 46058898 + 46058878 46058918 41 TGTTCTTGCCTGCCCATCTTCTCCGCTTTTGGGATGAAGAT TGTTCTTGCCTGCCCATCTTCTCTGCTTTTGGGATGAAGAT < 41bp 1 0.312143268607708 1 0.245404005050659 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDK5RAP3 ENSG00000264701 ncRNA_intronic Human antisense chr17:46058898 chr17:46058901 . . 0 24 hm5C_associated_SNPs_12505 0 0 1 1 1 chromatin 1 0.500231642358142 1 0.999536715283717 hm5C_site_14509 DeepMRMD:1;iRNA_m5C:0.999536715283717 14510 chr17 46136265 46136265 1 + C T rs574307293 46136252 + 46136232 46136272 41 CTCCTTTTCTGAGGAAGGTGCGGTTGGCTACAGCTCTGACT CTCCTTTTCTGAGGAAGGTGCGGTTGGCTACAGTTCTGACT < 41bp 1 0.174966498257504 1 0.154885411262512 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46136252 chr17:46136265 synonymous SNV . 0 34 hm5C_associated_SNPs_12506 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_14510 DeepMRMD:1;iRNA_m5C:0.999536712157817 14511 chr17 46184926 46184926 1 + C T rs4794453 46184945 + 46184925 46184965 41 ACCCGGCACCTGCGTGCACTCTCCGGCGTCCCAAGTGAGTG ATCCGGCACCTGCGTGCACTCTCCGGCGTCCCAAGTGAGTG < 41bp 1 0.66374670385025 1 0.801177561283112 experiment 0.672506592299499 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNX11 ENSG00000002919 UTR5 Human protein_coding chr17:46184945 chr17:46184926 . . 0 2 hm5C_associated_SNPs_12507 0 0 0 0 1 Cytosol 1 0.50023164392111 0.397644877433776 0.99953671215778 hm5C_site_14511 DeepMRMD:0.397644877433776;iRNA_m5C:0.99953671215778 14512 chr17 46199240 46199240 1 + C T rs182437136 46199224 + 46199204 46199244 41 CGTATGTGGCAAATTCTAAGCTGCCATATTGAACATCATCC CGTATGTGGCAAATTCTAAGCTGCCATATTGAACATTATCC < 41bp 1 0.419733036129102 1 0.124044448137283 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 UTR3 Human protein_coding chr17:46199224 chr17:46199240 . . 0 37 hm5C_associated_SNPs_12508 0 0 1 2 0 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_14512 DeepMRMD:1;iRNA_m5C:0.999536712157808 14513 chr17 46940283 46940283 1 + T C rs34042259 46940294 + 46940274 46940314 41 GCCCCTTTGTTTCAATTGTCCAATTTGTGACAAGATCTTCC GCCCCTTTGCTTCAATTGTCCAATTTGTGACAAGATCTTCC < 41bp 1 0.132575809196279 1 0.187479794025421 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46940294 chr17:46940283 synonymous SNV . 0 10 hm5C_associated_SNPs_12511 0 0 1 0 1 Ribosome 1 0.500231907579212 1 0.999536184841575 hm5C_site_14513 DeepMRMD:1;iRNA_m5C:0.999536184841575 14514 chr17 46940600 46940600 1 + C T rs111623438 46940590 + 46940570 46940610 41 TTTAAGTCGCATAACTCTAGCTGTATCATCCTCTCACCTGT TTTAAGTCGCATAACTCTAGCTGTATCATCTTCTCACCTGT < 41bp 1 0.67244268309204 1 0.161437928676605 experiment 0.655114633815919 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CALCOCO2 ENSG00000136436 UTR3 Human protein_coding chr17:46940590 chr17:46940600 . . 0 31 hm5C_associated_SNPs_12512 0 0 1 2 0 Ribosome 1 0.500232975456633 1 0.999534049086733 hm5C_site_14514 DeepMRMD:1;iRNA_m5C:0.999534049086733 14515 chr17 47128779 47128779 1 + A T rs62078409 47128775 + 47128755 47128795 41 AGGCCCAGGTTTGAGAGAGCCCAGAGGGGCAGAGCCCAGAG AGGCCCAGGTTTGAGAGAGCCCAGTGGGGCAGAGCCCAGAG < 41bp 1 0.65042007673725 1 0.348322570323944 experiment 0.6991598465255 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 UTR3 Human protein_coding chr17:47128775 chr17:47128779 . . 0 25 hm5C_associated_SNPs_12513 0 0 1 0 0 Ribosome 1 0.500231643921171 1 0.999536712157659 hm5C_site_14515 DeepMRMD:1;iRNA_m5C:0.999536712157659 14516 chr17 47128779 47128779 1 + A T rs62078409 47128784 + 47128764 47128804 41 TTTGAGAGAGCCCAGAGGGGCAGAGCCCAGAGCCTTGTTTG TTTGAGAGAGCCCAGTGGGGCAGAGCCCAGAGCCTTGTTTG < 41bp 1 0.678257546592834 1 0.518402516841888 experiment 0.643484906814331 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 UTR3 Human protein_coding chr17:47128784 chr17:47128779 . . 0 16 hm5C_associated_SNPs_12514 0 0 1 0 0 Ribosome 1 0.500231643921093 0.963194966316224 0.999536712157815 hm5C_site_14516 DeepMRMD:0.963194966316224;iRNA_m5C:0.999536712157815 14517 chr17 47128788 47128788 1 + G T rs145969585 47128784 + 47128764 47128804 41 TTTGAGAGAGCCCAGAGGGGCAGAGCCCAGAGCCTTGTTTG TTTGAGAGAGCCCAGAGGGGCAGATCCCAGAGCCTTGTTTG < 41bp 1 0.451083736500652 1 0.388192176818848 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 UTR3 Human protein_coding chr17:47128784 chr17:47128788 . . 0 25 hm5C_associated_SNPs_12515 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14517 DeepMRMD:1;iRNA_m5C:0.999536712157815 14518 chr17 47129814 47129814 1 + C T rs576842135 47129826 + 47129806 47129846 41 TCCTTTTCCGTTGGCTGATTCAGCTCCCAGAAGAGACGAGG TCCTTTTCTGTTGGCTGATTCAGCTCCCAGAAGAGACGAGG < 41bp 1 0.293755108125285 1 0.843390345573425 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 UTR3 Human protein_coding chr17:47129826 chr17:47129814 . . 0 9 hm5C_associated_SNPs_12516 0 0 1 0 0 Ribosome 1 0.500231643921092 0.31321930885315 0.999536712157815 hm5C_site_14518 DeepMRMD:0.31321930885315;iRNA_m5C:0.999536712157815 14519 chr17 47132179 47132179 1 + A G rs147682856 47132163 + 47132143 47132183 41 ATCCTACACCTCCATTGGGCCCTTTTTCAGTCTTCAATGGG ATCCTACACCTCCATTGGGCCCTTTTTCAGTCTTCAGTGGG < 41bp 1 0.017830194030932 1 0.0129223763942719 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 UTR3 Human protein_coding chr17:47132163 chr17:47132179 . . 0 37 hm5C_associated_SNPs_12517 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_14519 DeepMRMD:1;iRNA_m5C:0.999536712157815 14520 chr17 47132179 47132179 1 + A G rs147682856 47132188 + 47132168 47132208 41 TTCAGTCTTCAATGGGGGCCCAGTTGGCTCTAGAAGGAGAA TTCAGTCTTCAGTGGGGGCCCAGTTGGCTCTAGAAGGAGAA < 41bp 1 0.235773540437567 1 0.283973813056946 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control IGF2BP1 ENSG00000159217 UTR3 Human protein_coding chr17:47132188 chr17:47132179 . . 0 12 hm5C_associated_SNPs_12518 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14520 DeepMRMD:1;iRNA_m5C:0.999536712157815 14521 chr17 47904783 47904783 1 + A G rs147612239 47904766 + 47904746 47904786 41 CCATTGTTCTCCCTCAGGACCTGATTGATGAGTGGATAGCC CCATTGTTCTCCCTCAGGACCTGATTGATGAGTGGATGGCC < 41bp 1 0.22102546280226 1 0.0300179123878479 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KAT7 ENSG00000136504 CDS Human protein_coding chr17:47904766 chr17:47904783 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_12519 0 0 1 0 1 Cytosol 1 0.500231641775598 1 0.999536716448804 hm5C_site_14521 DeepMRMD:1;iRNA_m5C:0.999536716448804 14522 chr17 48165713 48165713 1 + C G rs187586850 48165705 + 48165685 48165725 41 ACCGACGACTACTGAGGGGGCAGCCCCCCGCCCCCGGCCCA ACCGACGACTACTGAGGGGGCAGCCCCCGGCCCCCGGCCCA < 41bp 1 0.352775445397452 1 0.275190532207489 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165705 chr17:48165713 . . 0 29 hm5C_associated_SNPs_12521 0 0 1 0 1 Cytosol 1 0.500231655461901 1 0.999536689076197 hm5C_site_14522 DeepMRMD:1;iRNA_m5C:0.999536689076197 14523 chr17 48165713 48165713 1 + C G rs187586850 48165715 + 48165695 48165735 41 ACTGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAAC ACTGAGGGGGCAGCCCCCGGCCCCCGGCCCACCTGGGTAAC < 41bp 1 0.209859152360323 1 0.196139544248581 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165715 chr17:48165713 . . 0 19 hm5C_associated_SNPs_12522 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14523 DeepMRMD:1;iRNA_m5C:0.999536712157815 14524 chr17 48165713 48165713 1 + C G rs187586850 48165716 + 48165696 48165736 41 CTGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACA CTGAGGGGGCAGCCCCCGGCCCCCGGCCCACCTGGGTAACA < 41bp 1 0.278946430065774 1 0.118668645620346 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165716 chr17:48165713 . . 0 18 hm5C_associated_SNPs_12523 0 0 1 0 1 Cytosol 1 0.500231643921129 1 0.999536712157741 hm5C_site_14524 DeepMRMD:1;iRNA_m5C:0.999536712157741 14525 chr17 48165713 48165713 1 + C G rs187586850 48165717 + 48165697 48165737 41 TGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACAC TGAGGGGGCAGCCCCCGGCCCCCGGCCCACCTGGGTAACAC < 41bp 1 0.399316010869842 1 0.107278019189835 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165717 chr17:48165713 . . 0 17 hm5C_associated_SNPs_12524 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14525 DeepMRMD:1;iRNA_m5C:0.999536712157815 14526 chr17 48165713 48165713 1 + C G rs187586850 48165718 + 48165698 48165738 41 GAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACACG GAGGGGGCAGCCCCCGGCCCCCGGCCCACCTGGGTAACACG < 41bp 1 0.167030193916403 1 0.259819835424423 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165718 chr17:48165713 . . 0 16 hm5C_associated_SNPs_12525 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14526 DeepMRMD:1;iRNA_m5C:0.999536712157815 14527 chr17 48165713 48165713 1 + C G rs187586850 48165719 + 48165699 48165739 41 AGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACACGG AGGGGGCAGCCCCCGGCCCCCGGCCCACCTGGGTAACACGG < 41bp 1 0.36413980329735 1 0.808478713035583 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165719 chr17:48165713 . . 0 15 hm5C_associated_SNPs_12526 0 0 1 0 1 Cytosol 1 0.500231643919676 0.383042573928834 0.999536712160648 hm5C_site_14527 DeepMRMD:0.383042573928834;iRNA_m5C:0.999536712160648 14528 chr17 48165720 48165720 1 + G A rs140614661 48165705 + 48165685 48165725 41 ACCGACGACTACTGAGGGGGCAGCCCCCCGCCCCCGGCCCA ACCGACGACTACTGAGGGGGCAGCCCCCCGCCCCCAGCCCA < 41bp 1 0.308478850792528 1 0.37536546587944 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165705 chr17:48165720 . . 0 36 hm5C_associated_SNPs_12527 0 0 1 1 1 Cytosol 1 0.500231643921089 1 0.999536712157822 hm5C_site_14528 DeepMRMD:1;iRNA_m5C:0.999536712157822 14529 chr17 48165720 48165720 1 + G A rs140614661 48165715 + 48165695 48165735 41 ACTGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAAC ACTGAGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAAC < 41bp 1 0.205398342768339 1 0.28998327255249 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165715 chr17:48165720 . . 0 26 hm5C_associated_SNPs_12528 0 0 1 1 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_14529 DeepMRMD:1;iRNA_m5C:0.999536712157815 14530 chr17 48165720 48165720 1 + G A rs140614661 48165716 + 48165696 48165736 41 CTGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACA CTGAGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAACA < 41bp 1 0.395038255975863 1 0.181744158267975 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165716 chr17:48165720 . . 0 25 hm5C_associated_SNPs_12529 0 0 1 1 1 Cytosol 1 0.500231643921093 1 0.999536712157813 hm5C_site_14530 DeepMRMD:1;iRNA_m5C:0.999536712157813 14531 chr17 48165720 48165720 1 + G A rs140614661 48165717 + 48165697 48165737 41 TGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACAC TGAGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAACAC < 41bp 1 0.214363814719171 1 0.139705985784531 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165717 chr17:48165720 . . 0 24 hm5C_associated_SNPs_12530 0 0 1 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14531 DeepMRMD:1;iRNA_m5C:0.999536712157815 14532 chr17 48165720 48165720 1 + G A rs140614661 48165718 + 48165698 48165738 41 GAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACACG GAGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAACACG < 41bp 1 0.0842942134315326 1 0.124434351921082 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165718 chr17:48165720 . . 0 23 hm5C_associated_SNPs_12531 0 0 1 1 1 Cytosol 1 0.500231643921087 1 0.999536712157825 hm5C_site_14532 DeepMRMD:1;iRNA_m5C:0.999536712157825 14533 chr17 48165720 48165720 1 + G A rs140614661 48165719 + 48165699 48165739 41 AGGGGGCAGCCCCCCGCCCCCGGCCCACCTGGGTAACACGG AGGGGGCAGCCCCCCGCCCCCAGCCCACCTGGGTAACACGG < 41bp 1 0.325604499575811 1 0.791081368923187 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48165719 chr17:48165720 . . 0 22 hm5C_associated_SNPs_12532 0 0 1 1 1 Cytosol 1 0.500231643921093 0.417837262153626 0.999536712157814 hm5C_site_14533 DeepMRMD:0.417837262153626;iRNA_m5C:0.999536712157814 14534 chr17 48167160 48167160 1 + T C rs184580419 48167150 + 48167130 48167170 41 ATGCCAGAGAGGTGGGGATCCTGCCTAAGGTTGTCTACGGG ATGCCAGAGAGGTGGGGATCCTGCCTAAGGCTGTCTACGGG < 41bp 1 0.65338185152486 1 0.698398470878601 experiment 0.693236296950281 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 UTR3 Human protein_coding chr17:48167150 chr17:48167160 . . 0 31 hm5C_associated_SNPs_12533 0 0 1 0 0 Cytosol 1 0.500231644039904 0.603203058242798 0.999536711920193 hm5C_site_14534 DeepMRMD:0.603203058242798;iRNA_m5C:0.999536711920193 14535 chr17 48185715 48185715 1 + G C rs576054151 48185696 + 48185676 48185716 41 TCCGCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGAGT TCCGCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGACT < 41bp 1 0.367897778538396 1 0.135297745466232 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185696 chr17:48185715 nonsynonymous SNV 0.965 0 40 hm5C_associated_SNPs_12534 0 0 1 0 2 Ribosome 1 0.500231643921246 1 0.999536712157507 hm5C_site_14535 DeepMRMD:1;iRNA_m5C:0.999536712157507 14536 chr17 48185715 48185715 1 + G C rs576054151 48185699 + 48185679 48185719 41 GCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGAGTCCA GCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGACTCCA < 41bp 1 0.423454794854848 1 0.326108455657959 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185699 chr17:48185715 nonsynonymous SNV 0.965 0 37 hm5C_associated_SNPs_12535 0 0 1 0 2 Ribosome 1 0.50023165068259 1 0.999536698634819 hm5C_site_14536 DeepMRMD:1;iRNA_m5C:0.999536698634819 14537 chr17 48556225 48556225 1 + C T rs555529887 48556230 + 48556210 48556250 41 CTGCTCGGGTCAGTGCGCCGCGCTGCGCTGGGCGCCATGGC CTGCTCGGGTCAGTGTGCCGCGCTGCGCTGGGCGCCATGGC < 41bp 1 0.622866422260161 1 0.339662045240402 experiment 0.754267155479678 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 UTR5 Human protein_coding chr17:48556230 chr17:48556225 . . 0 16 hm5C_associated_SNPs_12537 0 0 1 0 0 Ribosome 1 0.500233626654376 1 0.999532746691248 hm5C_site_14537 DeepMRMD:1;iRNA_m5C:0.999532746691248 14538 chr17 48557326 48557326 1 + G A rs2290862 48557327 + 48557307 48557347 41 CCTGGAGGCTGTGGCACAGGCAGCCCACCTGCCTGCAGACT CCTGGAGGCTGTGGCACAGACAGCCCACCTGCCTGCAGACT < 41bp 1 0.513200677977822 1 0.222530126571655 experiment 0.973598644044355 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48557327 chr17:48557326 nonsynonymous SNV 0.309 0 20 hm5C_associated_SNPs_12538 0 0 0 0 0 Ribosome 1 0.500231643920547 1 0.999536712158906 hm5C_site_14538 DeepMRMD:1;iRNA_m5C:0.999536712158906 14539 chr17 48559648 48559648 1 + C T rs199515699 48559664 + 48559644 48559684 41 CTCTCCCTCTACCAGCTGTCCCTGGAGCGGGGCACCGCACT CTCTTCCTCTACCAGCTGTCCCTGGAGCGGGGCACCGCACT < 41bp 1 0.260221697174173 1 0.156799346208572 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48559664 chr17:48559648 nonsynonymous SNV 0.970 4 5 hm5C_associated_SNPs_12539 0 0 0 0 0 Ribosome 1 0.500223288084387 1 0.999553423831226 hm5C_site_14539 DeepMRMD:1;iRNA_m5C:0.999553423831226 14540 chr17 48631733 48631733 1 + C T rs147637130 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TGTGTGTGCCTATTGACCGCCTTTTCTGAGCGCATGCGTCG < 41bp 1 0.0576084592614221 1 0.0201388597488403 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631733 synonymous SNV . 0 27 hm5C_associated_SNPs_12540 0 0 1 0 1 nucleus 1 0.500231640754908 1 0.999536718490184 hm5C_site_14540 DeepMRMD:1;iRNA_m5C:0.999536718490184 14541 chr17 48696111 48696111 1 + G T rs201895309 48696108 + 48696088 48696128 41 TTCGTGCTGACGGCCCAGTTCGTGCTAGTCAACGTGGTGAT TTCGTGCTGACGGCCCAGTTCGTTCTAGTCAACGTGGTGAT < 41bp 1 0.213803174664554 1 0.0886621475219727 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48696108 chr17:48696111 synonymous SNV . 0 24 hm5C_associated_SNPs_12541 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14541 DeepMRMD:1;iRNA_m5C:0.999536712157815 14542 chr17 49239140 49239140 1 + C T rs566810694 49239124 + 49239104 49239144 41 CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGCTTGT CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGTTTGT < 41bp 1 0.411978017994793 1 0.3665452003479 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239124 chr17:49239140 synonymous SNV . 0 37 hm5C_associated_SNPs_12542 0 0 1 0 1 Ribosome 1 0.500231642044351 1 0.999536715911299 hm5C_site_14542 DeepMRMD:1;iRNA_m5C:0.999536715911299 14543 chr17 49239201 49239201 1 + G C rs189685744 49239220 + 49239200 49239240 41 TGAATGACAGGAGGGCAGACCACATTGCTTTTCACATCCAT TCAATGACAGGAGGGCAGACCACATTGCTTTTCACATCCAT < 41bp 1 0.35880456479929 1 0.400739967823029 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NME1 ENSG00000239672 CDS Human protein_coding chr17:49239220 chr17:49239201 nonsynonymous SNV 0.990 0 2 hm5C_associated_SNPs_12543 0 0 1 0 0 Ribosome 1 0.500231659748336 1 0.999536680503327 hm5C_site_14543 DeepMRMD:1;iRNA_m5C:0.999536680503327 14544 chr17 49245701 49245701 1 + C T rs530546146 49245691 + 49245671 49245711 41 GAAGTACATGAACTCAGGGCCGGTTGTGGCCATGGTGAGTG GAAGTACATGAACTCAGGGCCGGTTGTGGCTATGGTGAGTG < 41bp 1 0.31008683801423 1 0.154196739196777 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49245691 chr17:49245701 synonymous SNV . 0 31 hm5C_associated_SNPs_12544 0 0 1 0 2 unknown 1 0.500231370078209 1 0.999537259843581 hm5C_site_14544 DeepMRMD:1;iRNA_m5C:0.999537259843581 14545 chr17 49248866 49248866 1 + T C rs148956596 49248851 + 49248831 49248871 41 ATTGTTTTCTTTCTTAGGAACATCATTCATGGCAGTGATTC ATTGTTTTCTTTCTTAGGAACATCATTCATGGCAGCGATTC < 41bp 1 0.245733870603354 1 0.031509667634964 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49248851 chr17:49248866 stoploss 0.994 0 36 hm5C_associated_SNPs_12545 0 0 1 0 1 unknown 1 0.500231669348576 1 0.999536661302848 hm5C_site_14545 DeepMRMD:1;iRNA_m5C:0.999536661302848 14546 chr17 49248866 49248866 1 + T C rs148956596 49248854 + 49248834 49248874 41 GTTTTCTTTCTTAGGAACATCATTCATGGCAGTGATTCAGT GTTTTCTTTCTTAGGAACATCATTCATGGCAGCGATTCAGT < 41bp 1 0.02923486397568 1 0.113658905029297 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49248854 chr17:49248866 stoploss 0.994 0 33 hm5C_associated_SNPs_12546 0 0 1 0 1 unknown 1 0.500231644335526 1 0.999536711328948 hm5C_site_14546 DeepMRMD:1;iRNA_m5C:0.999536711328948 14547 chr17 53828394 53828394 1 + C T rs191022282 53828408 + 53828388 53828428 41 GGTCACCCCGCCCCCAGGCCCACACTAAGGGTGTCCGCGGC GGTCACTCCGCCCCCAGGCCCACACTAAGGGTGTCCGCGGC < 41bp 1 0.593421626158327 1 0.0773493945598602 experiment 0.813156747683346 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCTP ENSG00000141179 UTR5 Human protein_coding chr17:53828408 chr17:53828394 . . 0 7 hm5C_associated_SNPs_12547 0 0 0 0 0 Ribosome 1 0.50023164392111 1 0.99953671215778 hm5C_site_14547 DeepMRMD:1;iRNA_m5C:0.99953671215778 14548 chr17 53844742 53844742 1 + G A rs112454522 53844740 + 53844720 53844760 41 GTCTTTGGTGTTCTGGAGGACTGCTCACCAACTCTACTGGC GTCTTTGGTGTTCTGGAGGACTACTCACCAACTCTACTGGC < 41bp 1 0.250856087538885 1 0.0653965175151825 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53844740 chr17:53844742 nonsynonymous SNV 0.008 4 23 hm5C_associated_SNPs_12548 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14548 DeepMRMD:1;iRNA_m5C:0.999536712157815 14549 chr17 53852178 53852178 1 + G A rs79806530 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCAGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.265355306488145 1 0.194811552762985 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852178 synonymous SNV . 0 14 hm5C_associated_SNPs_12549 0 0 1 1 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14549 DeepMRMD:1;iRNA_m5C:0.999536712157815 14550 chr17 54912459 54912459 1 + G C rs201209316 54912447 + 54912427 54912467 41 GGGCTCCGCGTGGACGAGGGCTGCCTCAGGAAGGCCGACAA GGGCTCCGCGTGGACGAGGGCTGCCTCAGGAACGCCGACAA < 41bp 1 0.655755977657129 1 0.150581926107407 experiment 0.688488044685742 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54912447 chr17:54912459 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_12550 0 0 0 0 0 Ribosome 1 0.500231660010181 1 0.999536679979639 hm5C_site_14550 DeepMRMD:1;iRNA_m5C:0.999536679979639 14551 chr17 55191921 55191921 1 + G A rs73317574 55191920 + 55191900 55191940 41 CACACACCCTACCTTCCACGCGCTGCGCAGCCTCGACCAGC CACACACCCTACCTTCCACGCACTGCGCAGCCTCGACCAGC < 41bp 1 0.218980705267286 1 0.0294417142868042 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191920 chr17:55191921 synonymous SNV . 0 22 hm5C_associated_SNPs_12555 0 0 1 1 0 Endoplasmic reticulum 1 0.500228969892861 1 0.999542060214279 hm5C_site_14551 DeepMRMD:1;iRNA_m5C:0.999542060214279 14552 chr17 55194242 55194242 1 + G A rs116339701 55194240 + 55194220 55194260 41 GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTC GGTCTGACTTTGTCACCCTGCCATTTCAGGGAGCAGAAGTC < 41bp 1 0.0315232068061885 1 0.0598895847797394 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194240 chr17:55194242 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_12556 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921736 1 0.999536712156527 hm5C_site_14552 DeepMRMD:1;iRNA_m5C:0.999536712156527 14553 chr17 55194242 55194242 1 + G A rs116339701 55194241 + 55194221 55194261 41 GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTCC GTCTGACTTTGTCACCCTGCCATTTCAGGGAGCAGAAGTCC < 41bp 1 0.0417497210381503 1 0.0501104593276978 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194241 chr17:55194242 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_12557 0 0 1 0 2 Endoplasmic reticulum 1 0.50024257102519 1 0.999514857949621 hm5C_site_14553 DeepMRMD:1;iRNA_m5C:0.999514857949621 14554 chr17 55194242 55194242 1 + G A rs116339701 55194253 + 55194233 55194273 41 CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG CACCCTGCCATTTCAGGGAGCAGAAGTCCTTCTGGACAGTG < 41bp 1 0.449359310618953 1 0.416833430528641 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194253 chr17:55194242 nonsynonymous SNV . 0 10 hm5C_associated_SNPs_12558 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_14554 DeepMRMD:1;iRNA_m5C:0.999536712157815 14555 chr17 57280100 57280100 1 + G A rs9908279 57280106 + 57280086 57280126 41 ATATTTTCGACAATGCCTTGCCAAGGAATCTCTGAAGTCCA ATATTTTCGACAATACCTTGCCAAGGAATCTCTGAAGTCCA < 41bp 1 0.10439174261717 1 0.0754818022251129 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRR11 ENSG00000265415 ncRNA_exonic Human antisense chr17:57280106 chr17:57280100 . . 0 15 hm5C_associated_SNPs_12559 0 0 1 0 0 Cytoplasm 1 0.500192288286463 1 0.999615423427074 hm5C_site_14555 DeepMRMD:1;iRNA_m5C:0.999615423427074 14556 chr17 57280881 57280881 1 + C T rs188344787 57280865 + 57280845 57280885 41 CAAAGTGCTGAGATTACAGGCGTGAGCCACCACGCCCGGCC CAAAGTGCTGAGATTACAGGCGTGAGCCACCACGCCTGGCC < 41bp 1 0.685845074815836 1 0.529391050338745 experiment 0.628309850368328 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRR11 ENSG00000265415 ncRNA_intronic Human antisense chr17:57280865 chr17:57280881 . . 0 37 hm5C_associated_SNPs_12560 0 0 1 0 1 Cytoplasm 1 0.500231643965414 0.94121789932251 0.999536712069172 hm5C_site_14556 DeepMRMD:0.94121789932251;iRNA_m5C:0.999536712069172 14557 chr17 58863616 58863616 1 + G A rs151121462 58863624 + 58863604 58863644 41 TCAGTTGGTAGAGCATCAGACTTAATCAGAGGGTCCAGGGT TCAGTTGGTAGAACATCAGACTTAATCAGAGGGTCCAGGGT < 41bp 1 0.0518071328597355 1 0.0525857210159302 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BCAS3 ENSG00000141376 intronic Human protein_coding chr17:58863624 chr17:58863616 . . 0 13 hm5C_associated_SNPs_12563 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14557 DeepMRMD:1;iRNA_m5C:0.999536712157815 14558 chr17 60503892 60503892 1 + A G rs2543409 60503875 + 60503855 60503895 41 CTGGTTTAATAATGGAAGAACAGCACAAGTGTTCTTCAAAG CTGGTTTAATAATGGAAGAACAGCACAAGTGTTCTTCGAAG < 41bp 1 0.658607702704626 1 0.475799560546875 experiment 0.682784594590749 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL2A ENSG00000087995 CDS Human protein_coding chr17:60503875 chr17:60503892 synonymous SNV . 0 38 hm5C_associated_SNPs_12565 0 0 0 0 0 Ribosome 1 0.500231643924417 1 0.999536712151166 hm5C_site_14558 DeepMRMD:1;iRNA_m5C:0.999536712151166 14559 chr17 60691377 60691377 1 + C T rs147460143 60691362 + 60691342 60691382 41 TGGCGTGGTGGCGTGTGCCTCTAGTCCCAGCTACCCGGGAG TGGCGTGGTGGCGTGTGCCTCTAGTCCCAGCTACCTGGGAG < 41bp 1 0.642807684884704 1 0.551683247089386 experiment 0.714384630230592 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLK2 ENSG00000146872 downstream Human protein_coding chr17:60691362 chr17:60691377 . . 0 36 hm5C_associated_SNPs_12566 0 0 0 0 0 Cytosol 1 0.500231643921092 0.896633505821228 0.999536712157815 hm5C_site_14559 DeepMRMD:0.896633505821228;iRNA_m5C:0.999536712157815 14560 chr17 60769739 60769739 1 + G T rs373776938 60769732 + 60769712 60769752 41 TTGAGGGTGCCCGCTACAGCCGCAGCAGCTCCAGCCCCACC TTGAGGGTGCCCGCTACAGCCGCAGCATCTCCAGCCCCACC < 41bp 1 0.589536361848384 1 0.687090754508972 experiment 0.820927276303232 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60769732 chr17:60769739 nonsynonymous SNV 0.649 0 28 hm5C_associated_SNPs_12568 0 0 0 0 0 Cytosol 1 0.50023164397981 0.625818490982056 0.99953671204038 hm5C_site_14560 DeepMRMD:0.625818490982056;iRNA_m5C:0.99953671204038 14561 chr17 61627965 61627965 1 + T C rs530493288 61627962 + 61627942 61627982 41 CTCCTCTCCTCCCTTCGGACCCATAGATCTCAGGCTCGGCT CTCCTCTCCTCCCTTCGGACCCACAGATCTCAGGCTCGGCT < 41bp 1 0.343430047983185 1 0.0218279659748077 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF7 ENSG00000136485 UTR5 Human protein_coding chr17:61627962 chr17:61627965 . . 0 24 hm5C_associated_SNPs_12569 0 0 1 0 0 Cytosol 1 0.500231643920834 1 0.999536712158333 hm5C_site_14561 DeepMRMD:1;iRNA_m5C:0.999536712158333 14562 chr17 61627979 61627979 1 + G C rs550188568 61627962 + 61627942 61627982 41 CTCCTCTCCTCCCTTCGGACCCATAGATCTCAGGCTCGGCT CTCCTCTCCTCCCTTCGGACCCATAGATCTCAGGCTCCGCT < 41bp 1 0.246078511038596 1 0.0307924449443817 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF7 ENSG00000136485 UTR5 Human protein_coding chr17:61627962 chr17:61627979 . . 0 38 hm5C_associated_SNPs_12570 0 0 1 0 0 Cytosol 1 0.500231642997093 1 0.999536714005814 hm5C_site_14562 DeepMRMD:1;iRNA_m5C:0.999536714005814 14563 chr17 61627982 61627982 1 + T C rs567134371 61627962 + 61627942 61627982 41 CTCCTCTCCTCCCTTCGGACCCATAGATCTCAGGCTCGGCT CTCCTCTCCTCCCTTCGGACCCATAGATCTCAGGCTCGGCC < 41bp 1 0.251672000712639 1 0.044093906879425 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF7 ENSG00000136485 UTR5 Human protein_coding chr17:61627962 chr17:61627982 . . 0 41 hm5C_associated_SNPs_12571 0 0 1 0 0 Cytosol 1 0.500231644016634 1 0.999536711966732 hm5C_site_14563 DeepMRMD:1;iRNA_m5C:0.999536711966732 14564 chr17 61666835 61666835 1 + T C rs189505261 61666850 + 61666830 61666870 41 TTGTGTTGAGGAGCAGTTCACGCACTGGCTGTGTCTATTCC TTGTGCTGAGGAGCAGTTCACGCACTGGCTGTGTCTATTCC < 41bp 1 0.358025634757008 1 0.0838854312896729 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF7 ENSG00000136485 UTR3 Human protein_coding chr17:61666850 chr17:61666835 . . 0 6 hm5C_associated_SNPs_12572 0 0 1 0 0 Cytosol 1 0.500228964932337 1 0.999542070135327 hm5C_site_14564 DeepMRMD:1;iRNA_m5C:0.999542070135327 14565 chr17 61909382 61909382 1 + C A rs115733234 61909374 + 61909354 61909394 41 TCCAATAAAGCTCTGTGGGCCAAGTCCTCTAGGACTCCAGT TCCAATAAAGCTCTGTGGGCCAAGTCCTATAGGACTCCAGT < 41bp 1 0.502372969596419 1 0.407424449920654 experiment 0.995254060807162 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMC5 ENSG00000087191;ENSG00000108604 downstream Human other chr17:61909374 chr17:61909382 . . 0 29 hm5C_associated_SNPs_12574 0 0 1 0 0 Ribosome 1 0.500231643919087 1 0.999536712161826 hm5C_site_14565 DeepMRMD:1;iRNA_m5C:0.999536712161826 14566 chr17 62223740 62223740 1 + G A rs142175716 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGA < 41bp 1 0.582757941300896 1 0.564111411571503 experiment 0.834484117398208 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223740 . . 0 41 hm5C_associated_SNPs_12575 0 0 1 0 0 unknown 1 0.500231643921788 0.871777176856994 0.999536712156423 hm5C_site_14566 DeepMRMD:0.871777176856994;iRNA_m5C:0.999536712156423 14567 chr17 62223740 62223740 1 + G A rs142175716 62223727 + 62223707 62223747 41 TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGAGGGTCAA < 41bp 1 0.228031434458722 1 0.304012060165405 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223727 chr17:62223740 . . 0 34 hm5C_associated_SNPs_12576 0 0 1 0 0 unknown 1 0.500231643900005 1 0.99953671219999 hm5C_site_14567 DeepMRMD:1;iRNA_m5C:0.99953671219999 14568 chr17 62223740 62223740 1 + G A rs142175716 62223728 + 62223708 62223748 41 TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGAGGGTCAAT < 41bp 1 0.636040778513472 1 0.16831910610199 experiment 0.727918442973055 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223728 chr17:62223740 . . 0 33 hm5C_associated_SNPs_12577 0 0 1 0 0 unknown 1 0.500231675189483 1 0.999536649621034 hm5C_site_14568 DeepMRMD:1;iRNA_m5C:0.999536649621034 14569 chr17 62223740 62223740 1 + G A rs142175716 62223735 + 62223715 62223755 41 CCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC CCCGCCGAGCTTCCTCGTGGCGCCGAGGGTCAATCTGCAGC < 41bp 1 0.579136773955022 1 0.0774265229701996 experiment 0.841726452089956 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223735 chr17:62223740 . . 0 26 hm5C_associated_SNPs_12578 0 0 1 0 0 unknown 1 0.500231643920691 1 0.999536712158617 hm5C_site_14569 DeepMRMD:1;iRNA_m5C:0.999536712158617 14570 chr17 62223740 62223740 1 + G A rs142175716 62223745 + 62223725 62223765 41 TTCCTCGTGGCGCCGGGGGTCAATCTGCAGCGCTAGAGCAT TTCCTCGTGGCGCCGAGGGTCAATCTGCAGCGCTAGAGCAT < 41bp 1 0.209609829415807 1 0.0469182431697845 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223745 chr17:62223740 . . 0 16 hm5C_associated_SNPs_12579 0 0 1 0 0 unknown 1 0.500231644428698 1 0.999536711142604 hm5C_site_14570 DeepMRMD:1;iRNA_m5C:0.999536711142604 14571 chr17 62223750 62223750 1 + T G rs554830608 62223735 + 62223715 62223755 41 CCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC CCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCGGCAGC < 41bp 1 0.681650411269548 1 0.120034992694855 experiment 0.636699177460904 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223735 chr17:62223750 . . 0 36 hm5C_associated_SNPs_12580 0 0 1 1 0 unknown 1 0.500231645614141 1 0.999536708771718 hm5C_site_14571 DeepMRMD:1;iRNA_m5C:0.999536708771718 14572 chr17 62223750 62223750 1 + T G rs554830608 62223745 + 62223725 62223765 41 TTCCTCGTGGCGCCGGGGGTCAATCTGCAGCGCTAGAGCAT TTCCTCGTGGCGCCGGGGGTCAATCGGCAGCGCTAGAGCAT < 41bp 1 0.262570863190749 1 0.237588882446289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223745 chr17:62223750 . . 0 26 hm5C_associated_SNPs_12581 0 0 1 1 0 unknown 1 0.500231643921768 1 0.999536712156463 hm5C_site_14572 DeepMRMD:1;iRNA_m5C:0.999536712156463 14573 chr17 62223750 62223750 1 + T G rs554830608 62223763 + 62223743 62223783 41 GTCAATCTGCAGCGCTAGAGCATGTGCTTGCGCATAACTGG GTCAATCGGCAGCGCTAGAGCATGTGCTTGCGCATAACTGG < 41bp 1 0.619562610694655 1 0.483423382043839 experiment 0.76087477861069 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223763 chr17:62223750 . . 0 8 hm5C_associated_SNPs_12582 0 0 1 1 0 unknown 1 0.500231642516315 1 0.999536714967371 hm5C_site_14573 DeepMRMD:1;iRNA_m5C:0.999536714967371 14574 chr17 62223750 62223750 1 + T G rs554830608 62223769 + 62223749 62223789 41 CTGCAGCGCTAGAGCATGTGCTTGCGCATAACTGGGGCCGC CGGCAGCGCTAGAGCATGTGCTTGCGCATAACTGGGGCCGC < 41bp 1 0.326904512602687 1 0.137423753738403 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223769 chr17:62223750 . . 0 2 hm5C_associated_SNPs_12583 0 0 1 1 0 unknown 1 0.500231644090236 1 0.999536711819529 hm5C_site_14574 DeepMRMD:1;iRNA_m5C:0.999536711819529 14575 chr17 62525471 62525471 1 + C T rs553416493 62525477 + 62525457 62525497 41 CTCCAGTTAACAAACACAAACAGTTCCACTTGGAGAGAAAA CTCCAGTTAACAAATACAAACAGTTCCACTTGGAGAGAAAA < 41bp 1 0.151022414154387 1 0.201005131006241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP95 ENSG00000258890 CDS Human protein_coding chr17:62525477 chr17:62525471 nonsynonymous SNV 0.047 0 15 hm5C_associated_SNPs_12584 0 0 0 0 2 Nucleus 1 0.500231643921096 1 0.999536712157807 hm5C_site_14575 DeepMRMD:1;iRNA_m5C:0.999536712157807 14576 chr17 62525473 62525473 1 + C A rs573184058 62525477 + 62525457 62525497 41 CTCCAGTTAACAAACACAAACAGTTCCACTTGGAGAGAAAA CTCCAGTTAACAAACAAAAACAGTTCCACTTGGAGAGAAAA < 41bp 1 0.179004745211208 1 0.324596494436264 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP95 ENSG00000258890 CDS Human protein_coding chr17:62525477 chr17:62525473 nonsynonymous SNV 0.010 0 17 hm5C_associated_SNPs_12585 0 0 0 0 2 Nucleus 1 0.50023165611777 1 0.999536687764461 hm5C_site_14576 DeepMRMD:1;iRNA_m5C:0.999536687764461 14577 chr17 64783081 64783081 1 + G A rs6504459 64783073 + 64783053 64783093 41 AAAATCCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG AAAATCCTTGTCCAAGGAGGCTGTTTCTATCTGCAAAGGAG < 41bp 1 0.04058404798873 1 0.139999061822891 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64783073 chr17:64783081 nonsynonymous SNV 0.975 0 29 hm5C_associated_SNPs_12586 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_14577 DeepMRMD:1;iRNA_m5C:0.999536712157816 14578 chr17 65690400 65690400 1 + G A rs7223558 65690393 + 65690373 65690413 41 CAGCATTGACTTTTGTCCTCCAAGAGAGGAAGAGAAGAAGT CAGCATTGACTTTTGTCCTCCAAGAGAAGAAGAGAAGAAGT < 41bp 1 0.56911116219465 1 0.734452426433563 experiment 0.861777675610699 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PITPNC1 ENSG00000154217 UTR3 Human protein_coding chr17:65690393 chr17:65690400 . . 0 28 hm5C_associated_SNPs_12587 0 0 0 0 0 Cytosol 1 0.50023164391878 0.531095147132874 0.999536712162441 hm5C_site_14578 DeepMRMD:0.531095147132874;iRNA_m5C:0.999536712162441 14579 chr17 65736812 65736812 1 + C T rs150579812 65736825 + 65736805 65736845 41 TATAGTTCCTTGTCTTTGGACATGTAAGAATTGGAGGCAAA TATAGTTTCTTGTCTTTGGACATGTAAGAATTGGAGGCAAA < 41bp 1 0.068259202457489 1 0.087387889623642 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA38B ENSG00000200394 ncRNA_exonic Human snoRNA chr17:65736825 chr17:65736812 . . 0 8 hm5C_associated_SNPs_12588 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_14579 DeepMRMD:1;iRNA_m5C:0.999536712157815 14580 chr17 65822320 65822320 1 + C G rs73351760 65822304 + 65822284 65822324 41 GGACGGCGACGCCGAGGAGACCCAGGATTCTGAGGACGACG GGACGGCGACGCCGAGGAGACCCAGGATTCTGAGGAGGACG < 41bp 1 0.288079240020148 1 0.0704384446144104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BPTF ENSG00000171634 CDS Human protein_coding chr17:65822304 chr17:65822320 nonsynonymous SNV 0.999 0 37 hm5C_associated_SNPs_12589 0 0 1 0 0 Cytosol 1 0.50023164558675 1 0.9995367088265 hm5C_site_14580 DeepMRMD:1;iRNA_m5C:0.9995367088265 14581 chr17 65822320 65822320 1 + C G rs73351760 65822305 + 65822285 65822325 41 GACGGCGACGCCGAGGAGACCCAGGATTCTGAGGACGACGA GACGGCGACGCCGAGGAGACCCAGGATTCTGAGGAGGACGA < 41bp 1 0.39035133386491 1 0.347697913646698 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BPTF ENSG00000171634 CDS Human protein_coding chr17:65822305 chr17:65822320 nonsynonymous SNV 0.999 0 36 hm5C_associated_SNPs_12590 0 0 1 0 0 Cytosol 1 0.500231643921072 1 0.999536712157856 hm5C_site_14581 DeepMRMD:1;iRNA_m5C:0.999536712157856 14582 chr17 65822320 65822320 1 + C G rs73351760 65822323 + 65822303 65822343 41 ACCCAGGATTCTGAGGACGACGAGGAGGATGAGATGGAAGA ACCCAGGATTCTGAGGAGGACGAGGAGGATGAGATGGAAGA < 41bp 1 0.568946443594201 1 0.699171245098114 experiment 0.862107112811598 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65822323 chr17:65822320 nonsynonymous SNV 0.999 0 18 hm5C_associated_SNPs_12592 0 0 1 0 0 Cytosol 1 0.500231643921092 0.601657509803772 0.999536712157815 hm5C_site_14582 DeepMRMD:0.601657509803772;iRNA_m5C:0.999536712157815 14583 chr17 66038264 66038264 1 + G A rs202246339 66038276 + 66038256 66038296 41 TTGATTCCGAAATTTGTGTCCTTCTTGGGCAGAACTGATTG TTGATTCCAAAATTTGTGTCCTTCTTGGGCAGAACTGATTG < 41bp 1 0.188898899771676 1 0.0809124708175659 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66038276 chr17:66038264 synonymous SNV . 0 9 hm5C_associated_SNPs_12593 0 0 1 0 1 Cytosol 1 0.500231643921042 1 0.999536712157916 hm5C_site_14583 DeepMRMD:1;iRNA_m5C:0.999536712157916 14584 chr17 66527460 66527460 1 + G A rs8082254 66527459 + 66527439 66527479 41 TCTTGGTTGTTAATTTAGAGCGTTTGGTTAAAGTATGTCCT TCTTGGTTGTTAATTTAGAGCATTTGGTTAAAGTATGTCCT < 41bp 1 0.0482442908721762 1 0.0642389357089996 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527459 chr17:66527460 . . 0 22 hm5C_associated_SNPs_12595 2 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14584 DeepMRMD:1;iRNA_m5C:0.999536712157815 Carney complex Carney complex 14585 chr17 66527802 66527802 1 + T A rs8905 66527809 + 66527789 66527829 41 AAGGCTATCCTGCTGAAAGTCCTGCTTTCCTATCTAGCATT AAGGCTATCCTGCAGAAAGTCCTGCTTTCCTATCTAGCATT < 41bp 1 0.104457204294905 1 0.049899697303772 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527809 chr17:66527802 . . 0 14 hm5C_associated_SNPs_12596 0 0 1 1 0 Ribosome 1 0.50023164389864 1 0.999536712202719 hm5C_site_14585 DeepMRMD:1;iRNA_m5C:0.999536712202719 14586 chr17 66527802 66527802 1 + T A rs8905 66527810 + 66527790 66527830 41 AGGCTATCCTGCTGAAAGTCCTGCTTTCCTATCTAGCATTT AGGCTATCCTGCAGAAAGTCCTGCTTTCCTATCTAGCATTT < 41bp 1 0.403204580029331 1 0.066148966550827 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527810 chr17:66527802 . . 0 13 hm5C_associated_SNPs_12597 0 0 1 1 0 Ribosome 1 0.500231643915114 1 0.999536712169772 hm5C_site_14586 DeepMRMD:1;iRNA_m5C:0.999536712169772 14587 chr17 66527802 66527802 1 + T A rs8905 66527813 + 66527793 66527833 41 CTATCCTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATT CTATCCTGCAGAAAGTCCTGCTTTCCTATCTAGCATTTATT < 41bp 1 0.0111947816061467 1 0.035890519618988 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527813 chr17:66527802 . . 0 10 hm5C_associated_SNPs_12598 0 0 1 1 0 Ribosome 1 0.500230992114587 1 0.999538015770826 hm5C_site_14587 DeepMRMD:1;iRNA_m5C:0.999538015770826 14588 chr17 66527802 66527802 1 + T A rs8905 66527817 + 66527797 66527837 41 CCTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTC CCTGCAGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTC < 41bp 1 0.0597860929580145 1 0.0829612612724304 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527817 chr17:66527802 . . 0 6 hm5C_associated_SNPs_12599 0 0 1 1 0 Ribosome 1 0.500231643921111 1 0.999536712157779 hm5C_site_14588 DeepMRMD:1;iRNA_m5C:0.999536712157779 14589 chr17 66527802 66527802 1 + T A rs8905 66527818 + 66527798 66527838 41 CTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTCT CTGCAGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTCT < 41bp 1 0.120289650042029 1 0.291931480169296 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527818 chr17:66527802 . . 0 5 hm5C_associated_SNPs_12600 0 0 1 1 0 Ribosome 1 0.500231642233055 1 0.99953671553389 hm5C_site_14589 DeepMRMD:1;iRNA_m5C:0.99953671553389 14590 chr17 66527802 66527802 1 + T A rs8905 66527822 + 66527802 66527842 41 TGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTCTGGCA AGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTCTGGCA < 41bp 1 0.330707451434861 1 0.345486104488373 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527822 chr17:66527802 . . 0 1 hm5C_associated_SNPs_12601 0 0 1 1 0 Ribosome 1 0.500231648817019 1 0.999536702365962 hm5C_site_14590 DeepMRMD:1;iRNA_m5C:0.999536702365962 14591 chr17 66527834 66527834 1 + T C rs9925 66527817 + 66527797 66527837 41 CCTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTC CCTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATTCCTC < 41bp 1 0.0642365032873785 1 0.0381206572055817 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527817 chr17:66527834 . . 0 38 hm5C_associated_SNPs_12602 2 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14591 DeepMRMD:1;iRNA_m5C:0.999536712157815 Carney complex Carney complex 14592 chr17 66527834 66527834 1 + T C rs9925 66527818 + 66527798 66527838 41 CTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTCT CTGCTGAAAGTCCTGCTTTCCTATCTAGCATTTATTCCTCT < 41bp 1 0.118660467085364 1 0.258398205041885 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527818 chr17:66527834 . . 0 37 hm5C_associated_SNPs_12603 2 0 1 1 0 Ribosome 1 0.500231751022627 1 0.999536497954746 hm5C_site_14592 DeepMRMD:1;iRNA_m5C:0.999536497954746 Carney complex Carney complex 14593 chr17 66527834 66527834 1 + T C rs9925 66527822 + 66527802 66527842 41 TGAAAGTCCTGCTTTCCTATCTAGCATTTATTTCTCTGGCA TGAAAGTCCTGCTTTCCTATCTAGCATTTATTCCTCTGGCA < 41bp 1 0.322419978841385 1 0.214265257120132 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527822 chr17:66527834 . . 0 33 hm5C_associated_SNPs_12604 2 0 1 1 0 Ribosome 1 0.500231557088592 1 0.999536885822816 hm5C_site_14593 DeepMRMD:1;iRNA_m5C:0.999536885822816 Carney complex Carney complex 14594 chr17 66527834 66527834 1 + T C rs9925 66527826 + 66527806 66527846 41 AGTCCTGCTTTCCTATCTAGCATTTATTTCTCTGGCAAACT AGTCCTGCTTTCCTATCTAGCATTTATTCCTCTGGCAAACT < 41bp 1 0.053540750520773 1 0.0245177447795868 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527826 chr17:66527834 . . 0 29 hm5C_associated_SNPs_12605 2 0 1 1 0 Ribosome 1 0.500231638044275 1 0.99953672391145 hm5C_site_14594 DeepMRMD:1;iRNA_m5C:0.99953672391145 Carney complex Carney complex 14595 chr17 66527834 66527834 1 + T C rs9925 66527835 + 66527815 66527855 41 TTCCTATCTAGCATTTATTTCTCTGGCAAACTTTTCTTTCT TTCCTATCTAGCATTTATTCCTCTGGCAAACTTTTCTTTCT < 41bp 1 0.260061758527175 1 0.29530268907547 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527835 chr17:66527834 . . 0 20 hm5C_associated_SNPs_12606 2 0 1 1 0 Ribosome 1 0.500231644283369 1 0.999536711433263 hm5C_site_14595 DeepMRMD:1;iRNA_m5C:0.999536711433263 Carney complex Carney complex 14596 chr17 66527834 66527834 1 + T C rs9925 66527837 + 66527817 66527857 41 CCTATCTAGCATTTATTTCTCTGGCAAACTTTTCTTTCTTT CCTATCTAGCATTTATTCCTCTGGCAAACTTTTCTTTCTTT < 41bp 1 0.384637624744771 1 0.744376182556152 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527837 chr17:66527834 . . 0 18 hm5C_associated_SNPs_12607 2 0 1 1 0 Ribosome 1 0.500231643921246 0.511247634887696 0.999536712157507 hm5C_site_14596 DeepMRMD:0.511247634887696;iRNA_m5C:0.999536712157507 Carney complex Carney complex 14597 chr17 66527834 66527834 1 + T C rs9925 66527841 + 66527821 66527861 41 TCTAGCATTTATTTCTCTGGCAAACTTTTCTTTCTTTTCTT TCTAGCATTTATTCCTCTGGCAAACTTTTCTTTCTTTTCTT < 41bp 1 0.161435947819117 1 0.346236884593964 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527841 chr17:66527834 . . 0 14 hm5C_associated_SNPs_12608 2 0 1 1 0 Ribosome 1 0.500231643920812 1 0.999536712158377 hm5C_site_14597 DeepMRMD:1;iRNA_m5C:0.999536712158377 Carney complex Carney complex 14598 chr17 66527849 66527849 1 + T C rs574960815 66527835 + 66527815 66527855 41 TTCCTATCTAGCATTTATTTCTCTGGCAAACTTTTCTTTCT TTCCTATCTAGCATTTATTTCTCTGGCAAACTTTCCTTTCT < 41bp 1 0.309733553242066 1 0.387093931436539 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527835 chr17:66527849 . . 0 35 hm5C_associated_SNPs_12609 0 0 1 0 0 Ribosome 1 0.500231643720623 1 0.999536712558754 hm5C_site_14598 DeepMRMD:1;iRNA_m5C:0.999536712558754 14599 chr17 66527849 66527849 1 + T C rs574960815 66527837 + 66527817 66527857 41 CCTATCTAGCATTTATTTCTCTGGCAAACTTTTCTTTCTTT CCTATCTAGCATTTATTTCTCTGGCAAACTTTCCTTTCTTT < 41bp 1 0.486532987870751 1 0.68550056219101 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527837 chr17:66527849 . . 0 33 hm5C_associated_SNPs_12610 0 0 1 0 0 Ribosome 1 0.500231643921108 0.62899887561798 0.999536712157784 hm5C_site_14599 DeepMRMD:0.62899887561798;iRNA_m5C:0.999536712157784 14600 chr17 66527849 66527849 1 + T C rs574960815 66527841 + 66527821 66527861 41 TCTAGCATTTATTTCTCTGGCAAACTTTTCTTTCTTTTCTT TCTAGCATTTATTTCTCTGGCAAACTTTCCTTTCTTTTCTT < 41bp 1 0.162614698060174 1 0.408770382404327 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRKAR1A ENSG00000108946 UTR3 Human protein_coding chr17:66527841 chr17:66527849 . . 0 29 hm5C_associated_SNPs_12611 0 0 1 0 0 Ribosome 1 0.50023164895871 1 0.99953670208258 hm5C_site_14600 DeepMRMD:1;iRNA_m5C:0.99953670208258 14601 chr17 71203668 71203668 1 + T G rs565823973 71203687 - 71203667 71203707 41 CAATGATAGTGCCGGGTTGGCAGTTAACTCTTTCACCCTAC CAATGATAGTGCCGGGTTGGCAGTTAACTCTTTCACCCTCC < 41bp 1 0.68817473377463 1 0.36156901717186 experiment 0.62365053245074 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM104A ENSG00000133193;ENSG00000166685 UTR3 Human other chr17:71203687 chr17:71203668 . . 0 40 hm5C_associated_SNPs_12612 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14601 DeepMRMD:1;iRNA_m5C:0.999536712157815 14602 chr17 71232510 71232510 1 + G A rs115090235 71232491 + 71232471 71232511 41 ATGAGCTCATTAGGTAAAATCCAAGTCATGGAGAAACAAGA ATGAGCTCATTAGGTAAAATCCAAGTCATGGAGAAACAAAA < 41bp 1 0.186581612457784 1 0.232911616563797 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71232491 chr17:71232510 nonsynonymous SNV 0.305 1 40 hm5C_associated_SNPs_12613 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_14602 DeepMRMD:1;iRNA_m5C:0.999536712157815 14603 chr17 71233118 71233118 1 + G A rs117209041 71233112 + 71233092 71233132 41 AAGCCACAACTTATCAGTCCCCAGGGGGAAAGACTCTCACA AAGCCACAACTTATCAGTCCCCAGGGAGAAAGACTCTCACA < 41bp 1 0.509085746593092 1 0.548308730125427 experiment 0.981828506813816 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71233112 chr17:71233118 synonymous SNV . 0 27 hm5C_associated_SNPs_12614 0 0 1 0 1 chromatin 1 0.500231643826358 0.903382539749146 0.999536712347284 hm5C_site_14603 DeepMRMD:0.903382539749146;iRNA_m5C:0.999536712347284 14604 chr17 71233130 71233130 1 + A G rs11869253 71233112 + 71233092 71233132 41 AAGCCACAACTTATCAGTCCCCAGGGGGAAAGACTCTCACA AAGCCACAACTTATCAGTCCCCAGGGGGAAAGACTCTCGCA < 41bp 1 0.530582661947579 1 0.733515620231628 experiment 0.938834676104842 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71233112 chr17:71233130 synonymous SNV . 0 39 hm5C_associated_SNPs_12615 0 0 0 0 1 chromatin 1 0.500231643921069 0.532968759536744 0.999536712157862 hm5C_site_14604 DeepMRMD:0.532968759536744;iRNA_m5C:0.999536712157862 14605 chr17 71239087 71239087 1 + G A rs1566290 71239105 + 71239085 71239125 41 ACGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG ACAATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG < 41bp 1 0.371387940594556 1 0.026333749294281 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239105 chr17:71239087 synonymous SNV . 0 3 hm5C_associated_SNPs_12616 0 0 1 0 2 chromatin 1 0.500231643817186 1 0.999536712365628 hm5C_site_14605 DeepMRMD:1;iRNA_m5C:0.999536712365628 14606 chr17 72199826 72199826 1 + C T rs576043787 72199841 + 72199821 72199861 41 TTCGTCCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT TTCGTTCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT < 41bp 1 0.278890648867617 1 0.22856816649437 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199841 chr17:72199826 . . 0 6 hm5C_associated_SNPs_12617 0 0 1 0 2 Ribosome 1 0.500231644473567 1 0.999536711052865 hm5C_site_14606 DeepMRMD:1;iRNA_m5C:0.999536711052865 14607 chr17 72199834 72199834 1 + C G rs76291586 72199841 + 72199821 72199861 41 TTCGTCCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT TTCGTCCTTTTCCGCGGTTGCTGCTTGCTGTGAGTGTCTCT < 41bp 1 0.310991834782997 1 0.218851238489151 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199841 chr17:72199834 . . 0 14 hm5C_associated_SNPs_12618 0 0 1 0 2 Ribosome 1 0.500231674738843 1 0.999536650522314 hm5C_site_14607 DeepMRMD:1;iRNA_m5C:0.999536650522314 14608 chr17 72199834 72199834 1 + C G rs76291586 72199848 + 72199828 72199868 41 TTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCTAGGGTGA TTTTCCGCGGTTGCTGCTTGCTGTGAGTGTCTCTAGGGTGA < 41bp 1 0.424799330990876 1 0.123483389616013 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199848 chr17:72199834 . . 0 7 hm5C_associated_SNPs_12619 0 0 1 0 2 Ribosome 1 0.500231643749933 1 0.999536712500133 hm5C_site_14608 DeepMRMD:1;iRNA_m5C:0.999536712500133 14609 chr17 72199845 72199845 1 + T C rs541788320 72199841 + 72199821 72199861 41 TTCGTCCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT TTCGTCCTTTTCCCCGGTTGCTGCCTGCTGTGAGTGTCTCT < 41bp 1 0.226730045482689 1 0.16775369644165 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199841 chr17:72199845 . . 0 25 hm5C_associated_SNPs_12620 0 0 1 0 2 Ribosome 1 0.500231643920464 1 0.999536712159072 hm5C_site_14609 DeepMRMD:1;iRNA_m5C:0.999536712159072 14610 chr17 72199845 72199845 1 + T C rs541788320 72199848 + 72199828 72199868 41 TTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCTAGGGTGA TTTTCCCCGGTTGCTGCCTGCTGTGAGTGTCTCTAGGGTGA < 41bp 1 0.331793778830596 1 0.199148297309875 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199848 chr17:72199845 . . 0 18 hm5C_associated_SNPs_12621 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14610 DeepMRMD:1;iRNA_m5C:0.999536712157815 14611 chr17 72199860 72199860 1 + C G rs76423818 72199841 + 72199821 72199861 41 TTCGTCCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCT TTCGTCCTTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTGT < 41bp 1 0.278711917337238 1 0.148866266012192 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199841 chr17:72199860 . . 0 40 hm5C_associated_SNPs_12622 0 0 1 0 1 Ribosome 1 0.500231657958689 1 0.999536684082622 hm5C_site_14611 DeepMRMD:1;iRNA_m5C:0.999536684082622 14612 chr17 72199860 72199860 1 + C G rs76423818 72199848 + 72199828 72199868 41 TTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTCTAGGGTGA TTTTCCCCGGTTGCTGCTTGCTGTGAGTGTCTGTAGGGTGA < 41bp 1 0.387640845904377 1 0.0641725361347198 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199848 chr17:72199860 . . 0 33 hm5C_associated_SNPs_12623 0 0 1 0 1 Ribosome 1 0.500231643938159 1 0.999536712123683 hm5C_site_14612 DeepMRMD:1;iRNA_m5C:0.999536712123683 14613 chr17 72764749 72764749 1 + C G rs199563744 72764746 + 72764726 72764766 41 GAAACGCAGCAGCAAACGGGCCCCGCAGATGGACTGGAGCA GAAACGCAGCAGCAAACGGGCCCGGCAGATGGACTGGAGCA < 41bp 1 0.341774006139217 1 0.197117298841476 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72764746 chr17:72764749 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_12624 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_14613 DeepMRMD:1;iRNA_m5C:0.999536712157817 14614 chr17 73030076 73030076 1 + G A rs115296203 73030056 + 73030036 73030076 41 TAAGCCAGGGATTGTGGGTTCGAGTCCCACCTGGGGTAGAG TAAGCCAGGGATTGTGGGTTCGAGTCCCACCTGGGGTAGAA < 41bp 1 0.474799216380551 1 0.472091495990753 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73030056 chr17:73030076 . . 0 41 hm5C_associated_SNPs_12625 0 0 1 0 0 unknown 1 0.50023164391858 1 0.999536712162841 hm5C_site_14614 DeepMRMD:1;iRNA_m5C:0.999536712162841 14615 chr17 73030076 73030076 1 + G A rs115296203 73030062 + 73030042 73030082 41 AGGGATTGTGGGTTCGAGTCCCACCTGGGGTAGAGGTGAAA AGGGATTGTGGGTTCGAGTCCCACCTGGGGTAGAAGTGAAA < 41bp 1 0.0456536825561849 1 0.106846481561661 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73030062 chr17:73030076 . . 0 35 hm5C_associated_SNPs_12626 0 0 1 0 0 unknown 1 0.500231651078046 1 0.999536697843908 hm5C_site_14615 DeepMRMD:1;iRNA_m5C:0.999536697843908 14616 chr17 73030076 73030076 1 + G A rs115296203 73030086 + 73030066 73030106 41 CTGGGGTAGAGGTGAAAGTTCCTTTTACGGAATTTTTTATT CTGGGGTAGAAGTGAAAGTTCCTTTTACGGAATTTTTTATT < 41bp 1 0.0203113925107533 1 0.0587451756000519 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73030086 chr17:73030076 . . 0 11 hm5C_associated_SNPs_12627 0 0 1 0 0 unknown 1 0.500231643913794 1 0.999536712172413 hm5C_site_14616 DeepMRMD:1;iRNA_m5C:0.999536712172413 14617 chr17 73030076 73030076 1 + G A rs115296203 73030087 + 73030067 73030107 41 TGGGGTAGAGGTGAAAGTTCCTTTTACGGAATTTTTTATTT TGGGGTAGAAGTGAAAGTTCCTTTTACGGAATTTTTTATTT < 41bp 1 0.0497586735255049 1 0.0625859797000885 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73030087 chr17:73030076 . . 0 10 hm5C_associated_SNPs_12628 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14617 DeepMRMD:1;iRNA_m5C:0.999536712157815 14618 chr17 73030083 73030083 1 + G A rs116725889 73030086 + 73030066 73030106 41 CTGGGGTAGAGGTGAAAGTTCCTTTTACGGAATTTTTTATT CTGGGGTAGAGGTGAAAATTCCTTTTACGGAATTTTTTATT < 41bp 1 0.0315810468429122 1 0.100319594144821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73030086 chr17:73030083 . . 0 18 hm5C_associated_SNPs_12629 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14618 DeepMRMD:1;iRNA_m5C:0.999536712157815 14619 chr17 73030083 73030083 1 + G A rs116725889 73030087 + 73030067 73030107 41 TGGGGTAGAGGTGAAAGTTCCTTTTACGGAATTTTTTATTT TGGGGTAGAGGTGAAAATTCCTTTTACGGAATTTTTTATTT < 41bp 1 0.0706570813168481 1 0.0798285007476807 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73030087 chr17:73030083 . . 0 17 hm5C_associated_SNPs_12630 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14619 DeepMRMD:1;iRNA_m5C:0.999536712157815 14620 chr17 73030091 73030091 1 + T C rs565483275 73030086 + 73030066 73030106 41 CTGGGGTAGAGGTGAAAGTTCCTTTTACGGAATTTTTTATT CTGGGGTAGAGGTGAAAGTTCCTTTCACGGAATTTTTTATT < 41bp 1 0.0175279831939656 1 0.078833669424057 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73030086 chr17:73030091 . . 0 26 hm5C_associated_SNPs_12631 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14620 DeepMRMD:1;iRNA_m5C:0.999536712157815 14621 chr17 73030091 73030091 1 + T C rs565483275 73030087 + 73030067 73030107 41 TGGGGTAGAGGTGAAAGTTCCTTTTACGGAATTTTTTATTT TGGGGTAGAGGTGAAAGTTCCTTTCACGGAATTTTTTATTT < 41bp 1 0.0405960156932084 1 0.0966687798500061 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73030087 chr17:73030091 . . 0 25 hm5C_associated_SNPs_12632 0 0 1 0 0 unknown 1 0.500231643907392 1 0.999536712185216 hm5C_site_14621 DeepMRMD:1;iRNA_m5C:0.999536712185216 14622 chr17 73030094 73030094 1 + G A rs12943281 73030086 + 73030066 73030106 41 CTGGGGTAGAGGTGAAAGTTCCTTTTACGGAATTTTTTATT CTGGGGTAGAGGTGAAAGTTCCTTTTACAGAATTTTTTATT < 41bp 1 0.0194293869271973 1 0.0562433302402496 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73030086 chr17:73030094 . . 0 29 hm5C_associated_SNPs_12633 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14622 DeepMRMD:1;iRNA_m5C:0.999536712157815 14623 chr17 73030094 73030094 1 + G A rs12943281 73030087 + 73030067 73030107 41 TGGGGTAGAGGTGAAAGTTCCTTTTACGGAATTTTTTATTT TGGGGTAGAGGTGAAAGTTCCTTTTACAGAATTTTTTATTT < 41bp 1 0.0568435507225812 1 0.0579130947589874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73030087 chr17:73030094 . . 0 28 hm5C_associated_SNPs_12634 0 0 1 0 0 unknown 1 0.500231641891716 1 0.999536716216568 hm5C_site_14623 DeepMRMD:1;iRNA_m5C:0.999536716216568 14624 chr17 73030097 73030097 1 + A T rs186775440 73030086 + 73030066 73030106 41 CTGGGGTAGAGGTGAAAGTTCCTTTTACGGAATTTTTTATT CTGGGGTAGAGGTGAAAGTTCCTTTTACGGATTTTTTTATT < 41bp 1 0.0238307212177114 1 0.0799922049045563 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73030086 chr17:73030097 . . 0 32 hm5C_associated_SNPs_12635 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14624 DeepMRMD:1;iRNA_m5C:0.999536712157815 14625 chr17 73030097 73030097 1 + A T rs186775440 73030087 + 73030067 73030107 41 TGGGGTAGAGGTGAAAGTTCCTTTTACGGAATTTTTTATTT TGGGGTAGAGGTGAAAGTTCCTTTTACGGATTTTTTTATTT < 41bp 1 0.0426538405942384 1 0.0618999600410461 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73030087 chr17:73030097 . . 0 31 hm5C_associated_SNPs_12636 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14625 DeepMRMD:1;iRNA_m5C:0.999536712157815 14626 chr17 73031263 73031263 1 + C T rs188459486 73031268 + 73031248 73031288 41 AGAAGATTGAGGGTTCGAGTCCCTTCGTGGTCGGAACGTTT AGAAGATTGAGGGTTTGAGTCCCTTCGTGGTCGGAACGTTT < 41bp 1 0.0416385973774185 1 0.031782329082489 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73031268 chr17:73031263 . . 0 16 hm5C_associated_SNPs_12637 0 0 1 0 0 unknown 1 0.500231643935372 1 0.999536712129257 hm5C_site_14626 DeepMRMD:1;iRNA_m5C:0.999536712129257 14627 chr17 73031263 73031263 1 + C T rs188459486 73031269 + 73031249 73031289 41 GAAGATTGAGGGTTCGAGTCCCTTCGTGGTCGGAACGTTTT GAAGATTGAGGGTTTGAGTCCCTTCGTGGTCGGAACGTTTT < 41bp 1 0.0132041993972812 1 0.0283395946025848 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73031269 chr17:73031263 . . 0 15 hm5C_associated_SNPs_12638 0 0 1 0 0 unknown 1 0.500231643909706 1 0.999536712180587 hm5C_site_14627 DeepMRMD:1;iRNA_m5C:0.999536712180587 14628 chr17 73031263 73031263 1 + C T rs188459486 73031270 + 73031250 73031290 41 AAGATTGAGGGTTCGAGTCCCTTCGTGGTCGGAACGTTTTA AAGATTGAGGGTTTGAGTCCCTTCGTGGTCGGAACGTTTTA < 41bp 1 0.187875739218504 1 0.237320303916931 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73031270 chr17:73031263 . . 0 14 hm5C_associated_SNPs_12639 0 0 1 0 0 unknown 1 0.500231644008992 1 0.999536711982017 hm5C_site_14628 DeepMRMD:1;iRNA_m5C:0.999536711982017 14629 chr17 73031263 73031263 1 + C T rs188459486 73031273 + 73031253 73031293 41 ATTGAGGGTTCGAGTCCCTTCGTGGTCGGAACGTTTTAATC ATTGAGGGTTTGAGTCCCTTCGTGGTCGGAACGTTTTAATC < 41bp 1 0.555726118282941 1 0.745377242565155 experiment 0.888547763434118 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73031273 chr17:73031263 . . 0 11 hm5C_associated_SNPs_12640 0 0 1 0 0 unknown 1 0.500231643921092 0.50924551486969 0.999536712157815 hm5C_site_14629 DeepMRMD:0.50924551486969;iRNA_m5C:0.999536712157815 14630 chr17 73031263 73031263 1 + C T rs188459486 73031279 + 73031259 73031299 41 GGTTCGAGTCCCTTCGTGGTCGGAACGTTTTAATCCCTGCA GGTTTGAGTCCCTTCGTGGTCGGAACGTTTTAATCCCTGCA < 41bp 1 0.670022663946593 1 0.789452433586121 experiment 0.659954672106815 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL58;ATP5H ENSG00000180901 intronic Human protein_coding chr17:73031279 chr17:73031263 . . 0 5 hm5C_associated_SNPs_12641 0 0 1 0 0 unknown 1 0.500231643921093 0.421095132827758 0.999536712157815 hm5C_site_14630 DeepMRMD:0.421095132827758;iRNA_m5C:0.999536712157815 14631 chr17 73060052 73060052 1 + T C rs186879104 73060062 + 73060042 73060082 41 GCTGTTTCTTTGAAAGTTGCCAAATGTGTTATGTTGTGTCT GCTGTTTCTTCGAAAGTTGCCAAATGTGTTATGTTGTGTCT < 41bp 1 0.311538153098922 1 0.914053320884705 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control KCTD2 ENSG00000180901 UTR3 Human protein_coding chr17:73060062 chr17:73060052 . . 0 11 hm5C_associated_SNPs_12642 0 0 1 2 0 Cytosol 1 0.500231644395515 0.17189335823059 0.99953671120897 hm5C_site_14631 DeepMRMD:0.17189335823059;iRNA_m5C:0.99953671120897 14632 chr17 73060073 73060073 1 + T A rs11077773 73060062 + 73060042 73060082 41 GCTGTTTCTTTGAAAGTTGCCAAATGTGTTATGTTGTGTCT GCTGTTTCTTTGAAAGTTGCCAAATGTGTTAAGTTGTGTCT < 41bp 1 0.28403294196186 1 0.878129959106445 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control KCTD2 ENSG00000180901 UTR3 Human protein_coding chr17:73060062 chr17:73060073 . . 0 32 hm5C_associated_SNPs_12643 0 1 1 1 0 Cytosol 1 0.500231643324889 0.24374008178711 0.999536713350222 hm5C_site_14632 DeepMRMD:0.24374008178711;iRNA_m5C:0.999536713350222 14633 chr17 73257986 73257986 1 + C T rs8075276 73257966 + 73257946 73257986 41 AGGGCAGTCCTTGTGGGGTCCTCGTGGCCAGCCAAGATGGC AGGGCAGTCCTTGTGGGGTCCTCGTGGCCAGCCAAGATGGT < 41bp 1 0.581305216931008 1 0.475688874721527 experiment 0.837389566137984 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPS7 ENSG00000125445 CDS Human protein_coding chr17:73257966 chr17:73257986 nonsynonymous SNV 0.857 0 41 hm5C_associated_SNPs_12644 1 0 1 0 0 Ribosome 1 0.500231643921174 1 0.999536712157652 hm5C_site_14633 DeepMRMD:1;iRNA_m5C:0.999536712157652 not specified not specified 14634 chr17 73513677 73513677 1 + A C rs11559205 73513687 + 73513667 73513707 41 GCCACTGTCTATCCAGGAAGCTTACCAGCTGCTGCTGACCG GCCACTGTCTCTCCAGGAAGCTTACCAGCTGCTGCTGACCG < 41bp 1 0.0579450892287986 1 0.0181275904178619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73513687 chr17:73513677 nonsynonymous SNV 0.995 2 11 hm5C_associated_SNPs_12645 2 0 1 0 2 Cytosol 1 0.500242719216609 1 0.999514561566782 hm5C_site_14634 DeepMRMD:1;iRNA_m5C:0.999514561566782 not specified not specified 14635 chr17 73513705 73513705 1 + C A rs201623351 73513687 + 73513667 73513707 41 GCCACTGTCTATCCAGGAAGCTTACCAGCTGCTGCTGACCG GCCACTGTCTATCCAGGAAGCTTACCAGCTGCTGCTGAACG < 41bp 1 0.0440153668426274 1 0.0486963093280792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73513687 chr17:73513705 nonsynonymous SNV 0.687 0 39 hm5C_associated_SNPs_12646 0 0 1 0 2 Cytosol 1 0.500231658048514 1 0.999536683902972 hm5C_site_14635 DeepMRMD:1;iRNA_m5C:0.999536683902972 14636 chr17 73517929 73517929 1 + G A rs200683263 73517921 + 73517901 73517941 41 GAGTCAAGCCCCATGAAGGGCCCAGGGGGCCCCTTTCAGCT GAGTCAAGCCCCATGAAGGGCCCAGGGGACCCCTTTCAGCT < 41bp 1 0.204830806678733 1 0.393041253089905 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517921 chr17:73517929 nonsynonymous SNV 0.001 0 29 hm5C_associated_SNPs_12647 1 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14636 DeepMRMD:1;iRNA_m5C:0.999536712157815 Pontoneocerebellar hypoplasia Pontoneocerebellar hypoplasia 14637 chr17 73517929 73517929 1 + G A rs200683263 73517922 + 73517902 73517942 41 AGTCAAGCCCCATGAAGGGCCCAGGGGGCCCCTTTCAGCTT AGTCAAGCCCCATGAAGGGCCCAGGGGACCCCTTTCAGCTT < 41bp 1 0.471718397084032 1 0.495807349681854 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517922 chr17:73517929 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_12648 1 0 0 0 0 Cytosol 1 0.500231643923372 1 0.999536712153256 hm5C_site_14637 DeepMRMD:1;iRNA_m5C:0.999536712153256 Pontoneocerebellar hypoplasia Pontoneocerebellar hypoplasia 14638 chr17 73517929 73517929 1 + G A rs200683263 73517933 + 73517913 73517953 41 ATGAAGGGCCCAGGGGGCCCCTTTCAGCTTCTGGGGTCCCT ATGAAGGGCCCAGGGGACCCCTTTCAGCTTCTGGGGTCCCT < 41bp 1 0.107861176182341 1 0.0786888003349304 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73517933 chr17:73517929 nonsynonymous SNV 0.001 0 17 hm5C_associated_SNPs_12649 1 0 0 0 0 Cytosol 1 0.500231643924953 1 0.999536712150094 hm5C_site_14638 DeepMRMD:1;iRNA_m5C:0.999536712150094 Pontoneocerebellar hypoplasia Pontoneocerebellar hypoplasia 14639 chr17 73738709 73738709 1 + C G rs147068910 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGAGGTACGGGTGCCCCTCTTTATCCGGCCTGAG < 41bp 1 0.129327897216239 1 0.0337329506874084 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738709 nonsynonymous SNV 0.874 4 11 hm5C_associated_SNPs_12650 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14639 DeepMRMD:1;iRNA_m5C:0.999536712157815 14640 chr17 73745015 73745015 1 + T C rs530916890 73745021 + 73745001 73745041 41 TGCAAGAAGTTGACTCCCTCCTGCGGGGCCGCCAGGTCCGC TGCAAGAAGTTGACCCCCTCCTGCGGGGCCGCCAGGTCCGC < 41bp 1 0.623258599585183 1 0.806787729263306 experiment 0.753482800829633 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73745021 chr17:73745015 nonsynonymous SNV 0.821 2 15 hm5C_associated_SNPs_12651 0 0 0 0 1 Cytosol 1 0.500231643919036 0.386424541473388 0.999536712161928 hm5C_site_14640 DeepMRMD:0.386424541473388;iRNA_m5C:0.999536712161928 14641 chr17 73745031 73745031 1 + G A rs147026529 73745021 + 73745001 73745041 41 TGCAAGAAGTTGACTCCCTCCTGCGGGGCCGCCAGGTCCGC TGCAAGAAGTTGACTCCCTCCTGCGGGGCCACCAGGTCCGC < 41bp 1 0.636600658844801 1 0.866208553314209 experiment 0.726798682310398 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73745021 chr17:73745031 nonsynonymous SNV 0.931 0 31 hm5C_associated_SNPs_12652 0 0 0 0 1 Cytosol 1 0.500231643781136 0.267582893371582 0.999536712437729 hm5C_site_14641 DeepMRMD:0.267582893371582;iRNA_m5C:0.999536712437729 14642 chr17 73746302 73746302 1 + A G rs149481974 73746321 + 73746301 73746341 41 GATCCATTTCAACTGGCTGCCCCCTTCTGGCAAGCCAATGG GGTCCATTTCAACTGGCTGCCCCCTTCTGGCAAGCCAATGG < 41bp 1 0.136187286437117 1 0.0756198167800903 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73746321 chr17:73746302 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_12653 0 0 0 0 0 Cytosol 1 0.500214007135887 1 0.999571985728227 hm5C_site_14642 DeepMRMD:1;iRNA_m5C:0.999571985728227 14643 chr17 73746302 73746302 1 + A G rs149481974 73746322 + 73746302 73746342 41 ATCCATTTCAACTGGCTGCCCCCTTCTGGCAAGCCAATGGG GTCCATTTCAACTGGCTGCCCCCTTCTGGCAAGCCAATGGG < 41bp 1 0.0693517709777441 1 0.0349402129650116 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73746322 chr17:73746302 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_12654 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14643 DeepMRMD:1;iRNA_m5C:0.999536712157815 14644 chr17 73750859 73750859 1 + C A rs8669 73750868 + 73750848 73750888 41 ACCACACTGCCCAGGGACTACTCCACCCTCACCTCCGTCTC ACCACACTGCCAAGGGACTACTCCACCCTCACCTCCGTCTC < 41bp 1 0.636402226549479 1 0.764699578285217 experiment 0.727195546901042 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73750868 chr17:73750859 synonymous SNV . 0 12 hm5C_associated_SNPs_12655 0 0 0 0 1 Cytosol 1 0.500231643987706 0.470600843429566 0.999536712024588 hm5C_site_14644 DeepMRMD:0.470600843429566;iRNA_m5C:0.999536712024588 14645 chr17 73753745 73753745 1 + G A rs530129255 73753742 + 73753722 73753762 41 ACCCCTGGGGGCCCAGCCCACCCGCATGCACAGAGCAGGGG ACCCCTGGGGGCCCAGCCCACCCACATGCACAGAGCAGGGG < 41bp 1 0.193544784182982 1 0.244442820549011 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73753742 chr17:73753745 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_12656 0 0 1 0 0 Cytosol 1 0.500231643849584 1 0.999536712300832 hm5C_site_14645 DeepMRMD:1;iRNA_m5C:0.999536712300832 14646 chr17 73814836 73814836 1 + C T rs76256594 73814827 + 73814807 73814847 41 CCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGC CCTAGCCCAGTGGGCACCAGCAGCGTCCCTGGCATGAATGC < 41bp 1 0.683823971444343 1 0.310820162296295 experiment 0.632352057111315 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814827 chr17:73814836 synonymous SNV . 0 30 hm5C_associated_SNPs_12657 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14646 DeepMRMD:1;iRNA_m5C:0.999536712157815 14647 chr17 73814836 73814836 1 + C T rs76256594 73814851 + 73814831 73814871 41 GTCCCCGGCATGAATGCAAACGCTCTGCCCTTCTACCCCAC GTCCCTGGCATGAATGCAAACGCTCTGCCCTTCTACCCCAC < 41bp 1 0.385275260256829 1 0.328525513410568 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814851 chr17:73814836 synonymous SNV . 0 6 hm5C_associated_SNPs_12658 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14647 DeepMRMD:1;iRNA_m5C:0.999536712157815 14648 chr17 74261677 74261677 1 + T A rs2585751 74261657 + 74261637 74261677 41 CGTGCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGT CGTGCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGA < 41bp 1 0.661738097883071 1 0.793696641921997 experiment 0.676523804233859 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261657 chr17:74261677 nonsynonymous SNV 0.998 3 41 hm5C_associated_SNPs_12659 0 0 0 0 1 Cytosol 1 0.500231643901865 0.412606716156006 0.999536712196271 hm5C_site_14648 DeepMRMD:0.412606716156006;iRNA_m5C:0.999536712196271 14649 chr17 74261677 74261677 1 + T A rs2585751 74261660 + 74261640 74261680 41 GCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGTTGC GCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGATGC < 41bp 1 0.251819366180033 1 0.234489589929581 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261660 chr17:74261677 nonsynonymous SNV 0.998 3 38 hm5C_associated_SNPs_12660 0 0 0 0 1 Cytosol 1 0.500231290944118 1 0.999537418111764 hm5C_site_14649 DeepMRMD:1;iRNA_m5C:0.999537418111764 14650 chr17 74261677 74261677 1 + T A rs2585751 74261661 + 74261641 74261681 41 CTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGTTGCT CTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGATGCT < 41bp 1 0.301801842835756 1 0.126096606254578 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261661 chr17:74261677 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_12661 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14650 DeepMRMD:1;iRNA_m5C:0.999536712157815 14651 chr17 74379390 74379390 1 + A C rs528471547 74379383 + 74379363 74379403 41 CCGATACGCGCGCGGAGCTGCGGCCCCAGGGACCCCGCGTC CCGATACGCGCGCGGAGCTGCGGCCCCCGGGACCCCGCGTC < 41bp 1 0.517182501060458 1 0.548034727573395 experiment 0.965634997879083 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PRPSAP1;SPHK1 ENSG00000161542;ENSG00000176170 intronic Human other chr17:74379383 chr17:74379390 . . 0 28 hm5C_associated_SNPs_12663 0 0 1 0 0 unknown 1 0.500230901575731 0.90393054485321 0.999538196848538 hm5C_site_14651 DeepMRMD:0.90393054485321;iRNA_m5C:0.999538196848538 14652 chr17 74379390 74379390 1 + A C rs528471547 74379386 + 74379366 74379406 41 ATACGCGCGCGGAGCTGCGGCCCCAGGGACCCCGCGTCCCA ATACGCGCGCGGAGCTGCGGCCCCCGGGACCCCGCGTCCCA < 41bp 1 0.159618171766883 1 0.0646080076694489 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PRPSAP1;SPHK1 ENSG00000161542;ENSG00000176170 intronic Human other chr17:74379386 chr17:74379390 . . 0 25 hm5C_associated_SNPs_12664 0 0 1 0 0 unknown 1 0.50023164375178 1 0.99953671249644 hm5C_site_14652 DeepMRMD:1;iRNA_m5C:0.99953671249644 14653 chr17 74379390 74379390 1 + A C rs528471547 74379387 + 74379367 74379407 41 TACGCGCGCGGAGCTGCGGCCCCAGGGACCCCGCGTCCCAG TACGCGCGCGGAGCTGCGGCCCCCGGGACCCCGCGTCCCAG < 41bp 1 0.357346757687763 1 0.336397469043732 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PRPSAP1;SPHK1 ENSG00000161542;ENSG00000176170 intronic Human other chr17:74379387 chr17:74379390 . . 0 24 hm5C_associated_SNPs_12665 0 0 1 0 0 unknown 1 0.500230225219645 1 0.999539549560709 hm5C_site_14653 DeepMRMD:1;iRNA_m5C:0.999539549560709 14654 chr17 74379390 74379390 1 + A C rs528471547 74379388 + 74379368 74379408 41 ACGCGCGCGGAGCTGCGGCCCCAGGGACCCCGCGTCCCAGC ACGCGCGCGGAGCTGCGGCCCCCGGGACCCCGCGTCCCAGC < 41bp 1 0.599867436364998 1 0.350023508071899 experiment 0.800265127270003 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PRPSAP1;SPHK1 ENSG00000161542;ENSG00000176170 intronic Human other chr17:74379388 chr17:74379390 . . 0 23 hm5C_associated_SNPs_12666 0 0 1 0 0 unknown 1 0.500231643920947 1 0.999536712158106 hm5C_site_14654 DeepMRMD:1;iRNA_m5C:0.999536712158106 14655 chr17 74379390 74379390 1 + A C rs528471547 74379389 + 74379369 74379409 41 CGCGCGCGGAGCTGCGGCCCCAGGGACCCCGCGTCCCAGCC CGCGCGCGGAGCTGCGGCCCCCGGGACCCCGCGTCCCAGCC < 41bp 1 0.693675706629523 1 0.850048542022705 experiment 0.612648586740953 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PRPSAP1;SPHK1 ENSG00000161542;ENSG00000176170 intronic Human other chr17:74379389 chr17:74379390 . . 0 22 hm5C_associated_SNPs_12667 0 0 1 0 0 unknown 1 0.500231868288546 0.29990291595459 0.999536263422909 hm5C_site_14655 DeepMRMD:0.29990291595459;iRNA_m5C:0.999536263422909 14656 chr17 74383637 74383637 1 + G T rs3744039 74383622 + 74383602 74383642 41 GGTTGCGTGGAGCCCCCGCCCAGCTGGAAGCCCCAGCAGAT GGTTGCGTGGAGCCCCCGCCCAGCTGGAAGCCCCATCAGAT < 41bp 1 0.56663068704019 1 0.716617345809937 experiment 0.86673862591962 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74383622 chr17:74383637 nonsynonymous SNV 0.001 1 36 hm5C_associated_SNPs_12668 0 0 1 0 0 nucleolus 1 0.500231643921092 0.566765308380126 0.999536712157815 hm5C_site_14656 DeepMRMD:0.566765308380126;iRNA_m5C:0.999536712157815 14657 chr17 74383638 74383638 1 + C T rs3744040 74383622 + 74383602 74383642 41 GGTTGCGTGGAGCCCCCGCCCAGCTGGAAGCCCCAGCAGAT GGTTGCGTGGAGCCCCCGCCCAGCTGGAAGCCCCAGTAGAT < 41bp 1 0.547194893892366 1 0.710124135017395 experiment 0.905610212215268 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74383622 chr17:74383638 stopgain 0.003 0 37 hm5C_associated_SNPs_12669 0 0 1 0 0 nucleolus 1 0.500231643921093 0.57975172996521 0.999536712157815 hm5C_site_14657 DeepMRMD:0.57975172996521;iRNA_m5C:0.999536712157815 14658 chr17 74557211 74557211 1 + A C rs16969028 74557218 + 74557198 74557238 41 CATGATGATTTCAAGTTATCCCTGTCTGAAGGCAAAGAAAG CATGATGATTTCACGTTATCCCTGTCTGAAGGCAAAGAAAG < 41bp 1 0.0946191361264457 1 0.048850953578949 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557218 chr17:74557211 . . 0 14 hm5C_associated_SNPs_12670 0 0 1 1 0 unknown 1 0.500231644085841 1 0.999536711828318 hm5C_site_14658 DeepMRMD:1;iRNA_m5C:0.999536711828318 14659 chr17 74557211 74557211 1 + A C rs16969028 74557219 + 74557199 74557239 41 ATGATGATTTCAAGTTATCCCTGTCTGAAGGCAAAGAAAGG ATGATGATTTCACGTTATCCCTGTCTGAAGGCAAAGAAAGG < 41bp 1 0.117886172698094 1 0.0701704025268555 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557219 chr17:74557211 . . 0 13 hm5C_associated_SNPs_12671 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14659 DeepMRMD:1;iRNA_m5C:0.999536712157815 14660 chr17 74557211 74557211 1 + A C rs16969028 74557230 + 74557210 74557250 41 AAGTTATCCCTGTCTGAAGGCAAAGAAAGGCCTTTCTGTGT ACGTTATCCCTGTCTGAAGGCAAAGAAAGGCCTTTCTGTGT < 41bp 1 0.300869750797145 1 0.339674115180969 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557230 chr17:74557211 . . 0 2 hm5C_associated_SNPs_12672 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14660 DeepMRMD:1;iRNA_m5C:0.999536712157815 14661 chr17 74557239 74557239 1 + G C rs73369107 74557219 + 74557199 74557239 41 ATGATGATTTCAAGTTATCCCTGTCTGAAGGCAAAGAAAGG ATGATGATTTCAAGTTATCCCTGTCTGAAGGCAAAGAAAGC < 41bp 1 0.105123618736192 1 0.0653258562088013 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557219 chr17:74557239 . . 0 41 hm5C_associated_SNPs_12673 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_14661 DeepMRMD:1;iRNA_m5C:0.999536712157815 14662 chr17 74557239 74557239 1 + G C rs73369107 74557230 + 74557210 74557250 41 AAGTTATCCCTGTCTGAAGGCAAAGAAAGGCCTTTCTGTGT AAGTTATCCCTGTCTGAAGGCAAAGAAAGCCCTTTCTGTGT < 41bp 1 0.263599007111351 1 0.260926783084869 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557230 chr17:74557239 . . 0 30 hm5C_associated_SNPs_12674 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14662 DeepMRMD:1;iRNA_m5C:0.999536712157815 14663 chr17 74557239 74557239 1 + G C rs73369107 74557240 + 74557220 74557260 41 TGTCTGAAGGCAAAGAAAGGCCTTTCTGTGTGGAATTTGAA TGTCTGAAGGCAAAGAAAGCCCTTTCTGTGTGGAATTTGAA < 41bp 1 0.011687700716305 1 0.059215784072876 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557240 chr17:74557239 . . 0 20 hm5C_associated_SNPs_12675 0 0 1 0 0 unknown 1 0.500231602085796 1 0.999536795828407 hm5C_site_14663 DeepMRMD:1;iRNA_m5C:0.999536795828407 14664 chr17 74557239 74557239 1 + G C rs73369107 74557241 + 74557221 74557261 41 GTCTGAAGGCAAAGAAAGGCCTTTCTGTGTGGAATTTGAAT GTCTGAAGGCAAAGAAAGCCCTTTCTGTGTGGAATTTGAAT < 41bp 1 0.0214196462364491 1 0.0351219773292542 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557241 chr17:74557239 . . 0 19 hm5C_associated_SNPs_12676 0 0 1 0 0 unknown 1 0.500231643921462 1 0.999536712157076 hm5C_site_14664 DeepMRMD:1;iRNA_m5C:0.999536712157076 14665 chr17 74557239 74557239 1 + G C rs73369107 74557245 + 74557225 74557265 41 GAAGGCAAAGAAAGGCCTTTCTGTGTGGAATTTGAATATCT GAAGGCAAAGAAAGCCCTTTCTGTGTGGAATTTGAATATCT < 41bp 1 0.32463641747374 1 0.599227428436279 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557245 chr17:74557239 . . 0 15 hm5C_associated_SNPs_12677 0 0 1 0 0 unknown 1 0.500231640687608 0.801545143127442 0.999536718624785 hm5C_site_14665 DeepMRMD:0.801545143127442;iRNA_m5C:0.999536718624785 14666 chr17 74557777 74557777 1 + C G rs137955606 74557758 + 74557738 74557778 41 TCCCTGTCTGAAAATCTGGACTGAGGGAAATAATCTATTCT TCCCTGTCTGAAAATCTGGACTGAGGGAAATAATCTATTGT < 41bp 1 0.286527202083741 1 0.0959270894527435 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD1A ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74557758 chr17:74557777 . . 0 40 hm5C_associated_SNPs_12678 0 0 1 0 0 unknown 1 0.500231643737917 1 0.999536712524166 hm5C_site_14666 DeepMRMD:1;iRNA_m5C:0.999536712524166 14667 chr17 74557777 74557777 1 + C G rs137955606 74557772 + 74557752 74557792 41 TCTGGACTGAGGGAAATAATCTATTCTGAGGCTTAAGGGTT TCTGGACTGAGGGAAATAATCTATTGTGAGGCTTAAGGGTT < 41bp 1 0.375981288997169 1 0.176806956529617 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD1A ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74557772 chr17:74557777 . . 0 26 hm5C_associated_SNPs_12679 0 0 1 0 0 unknown 1 0.500231643920674 1 0.999536712158652 hm5C_site_14667 DeepMRMD:1;iRNA_m5C:0.999536712158652 14668 chr17 74557784 74557784 1 + T A rs79775067 74557772 + 74557752 74557792 41 TCTGGACTGAGGGAAATAATCTATTCTGAGGCTTAAGGGTT TCTGGACTGAGGGAAATAATCTATTCTGAGGCATAAGGGTT < 41bp 1 0.273935556350287 1 0.0899583995342255 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD1A ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74557772 chr17:74557784 . . 0 33 hm5C_associated_SNPs_12680 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14668 DeepMRMD:1;iRNA_m5C:0.999536712157815 14669 chr17 74557784 74557784 1 + T A rs79775067 74557777 + 74557757 74557797 41 ACTGAGGGAAATAATCTATTCTGAGGCTTAAGGGTTTGGCT ACTGAGGGAAATAATCTATTCTGAGGCATAAGGGTTTGGCT < 41bp 1 0.547602702871065 1 0.485597461462021 experiment 0.904794594257871 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD1A ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74557777 chr17:74557784 . . 0 28 hm5C_associated_SNPs_12681 0 0 1 0 0 unknown 1 0.500231643921089 1 0.999536712157821 hm5C_site_14669 DeepMRMD:1;iRNA_m5C:0.999536712157821 14670 chr17 75085434 75085434 1 + G A rs2678770 75085422 + 75085402 75085442 41 AGGCTCCTGTGTTGTTGAGCCTGCCAAGTTGTGGGTGCAGC AGGCTCCTGTGTTGTTGAGCCTGCCAAGTTGTAGGTGCAGC < 41bp 1 0.191200862769069 1 0.110502511262894 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA16 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75085422 chr17:75085434 . . 0 33 hm5C_associated_SNPs_12683 0 0 1 1 0 unknown 1 0.500231644839852 1 0.999536710320295 hm5C_site_14670 DeepMRMD:1;iRNA_m5C:0.999536710320295 14671 chr17 75085434 75085434 1 + G A rs2678770 75085425 + 75085405 75085445 41 CTCCTGTGTTGTTGAGCCTGCCAAGTTGTGGGTGCAGCATG CTCCTGTGTTGTTGAGCCTGCCAAGTTGTAGGTGCAGCATG < 41bp 1 0.14384080520067 1 0.384666502475739 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA16 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75085425 chr17:75085434 . . 0 30 hm5C_associated_SNPs_12684 0 0 1 1 0 unknown 1 0.500231642316322 1 0.999536715367357 hm5C_site_14671 DeepMRMD:1;iRNA_m5C:0.999536715367357 14672 chr17 75085434 75085434 1 + G A rs2678770 75085426 + 75085406 75085446 41 TCCTGTGTTGTTGAGCCTGCCAAGTTGTGGGTGCAGCATGG TCCTGTGTTGTTGAGCCTGCCAAGTTGTAGGTGCAGCATGG < 41bp 1 0.322964153074747 1 0.483523964881897 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA16 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75085426 chr17:75085434 . . 0 29 hm5C_associated_SNPs_12685 0 0 1 1 0 unknown 1 0.500231643892737 1 0.999536712214525 hm5C_site_14672 DeepMRMD:1;iRNA_m5C:0.999536712214525 14673 chr17 75085434 75085434 1 + G A rs2678770 75085439 + 75085419 75085459 41 AGCCTGCCAAGTTGTGGGTGCAGCATGGTACCAGGCAGCCC AGCCTGCCAAGTTGTAGGTGCAGCATGGTACCAGGCAGCCC < 41bp 1 0.554967426388114 1 0.306269228458405 experiment 0.890065147223773 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA16 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75085439 chr17:75085434 . . 0 16 hm5C_associated_SNPs_12686 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14673 DeepMRMD:1;iRNA_m5C:0.999536712157815 14674 chr17 75085434 75085434 1 + G A rs2678770 75085449 + 75085429 75085469 41 GTTGTGGGTGCAGCATGGTACCAGGCAGCCCAACCCTGACC GTTGTAGGTGCAGCATGGTACCAGGCAGCCCAACCCTGACC < 41bp 1 0.38022598764564 1 0.290946245193481 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA16 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75085449 chr17:75085434 . . 0 6 hm5C_associated_SNPs_12687 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14674 DeepMRMD:1;iRNA_m5C:0.999536712157815 14675 chr17 75085434 75085434 1 + G A rs2678770 75085454 + 75085434 75085474 41 GGGTGCAGCATGGTACCAGGCAGCCCAACCCTGACCTAAAG AGGTGCAGCATGGTACCAGGCAGCCCAACCCTGACCTAAAG < 41bp 1 0.351227895827462 1 0.35416167974472 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA16 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75085454 chr17:75085434 . . 0 1 hm5C_associated_SNPs_12688 0 0 1 1 0 unknown 1 0.500231643922922 1 0.999536712154157 hm5C_site_14675 DeepMRMD:1;iRNA_m5C:0.999536712154157 14676 chr17 75090184 75090184 1 + G A rs150793676 75090199 + 75090179 75090219 41 GCGGTGGTGTGACCTCGGCTCACTGCATCCTCCGCCTCCCG GCGGTAGTGTGACCTCGGCTCACTGCATCCTCCGCCTCCCG < 41bp 1 0.284151657922477 1 0.119969218969345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNHG20 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75090199 chr17:75090184 . . 0 6 hm5C_associated_SNPs_12689 0 0 1 0 1 unknown 1 0.500231650582595 1 0.999536698834811 hm5C_site_14676 DeepMRMD:1;iRNA_m5C:0.999536698834811 14677 chr17 75090194 75090194 1 + C G rs557214931 75090199 + 75090179 75090219 41 GCGGTGGTGTGACCTCGGCTCACTGCATCCTCCGCCTCCCG GCGGTGGTGTGACCTGGGCTCACTGCATCCTCCGCCTCCCG < 41bp 1 0.324614008979281 1 0.0994852781295776 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNHG20 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75090199 chr17:75090194 . . 0 16 hm5C_associated_SNPs_12690 0 0 1 0 1 unknown 1 0.500231646390004 1 0.999536707219993 hm5C_site_14677 DeepMRMD:1;iRNA_m5C:0.999536707219993 14678 chr17 75090211 75090211 1 + C T rs117430551 75090199 + 75090179 75090219 41 GCGGTGGTGTGACCTCGGCTCACTGCATCCTCCGCCTCCCG GCGGTGGTGTGACCTCGGCTCACTGCATCCTCTGCCTCCCG < 41bp 1 0.285426851191911 1 0.156084060668945 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNHG20 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75090199 chr17:75090211 . . 0 33 hm5C_associated_SNPs_12691 0 0 1 0 1 unknown 1 0.500231644699352 1 0.999536710601296 hm5C_site_14678 DeepMRMD:1;iRNA_m5C:0.999536710601296 14679 chr17 75090315 75090315 1 + G C rs562320980 75090333 + 75090313 75090353 41 TGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTTGG TGCTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTTGG < 41bp 1 0.54214199255699 1 0.690762102603912 experiment 0.91571601488602 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNHG20 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75090333 chr17:75090315 . . 0 3 hm5C_associated_SNPs_12692 0 0 0 0 0 unknown 1 0.500231643409025 0.618475794792176 0.99953671318195 hm5C_site_14679 DeepMRMD:0.618475794792176;iRNA_m5C:0.99953671318195 14680 chr17 75090363 75090363 1 + G A rs149508879 75090358 + 75090338 75090378 41 GATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGG GATCCACCTGCCTTGGCCTCCCAAAATGCTGGGATTACAGG < 41bp 1 0.170663138269619 1 0.360703349113464 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SNHG20 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75090358 chr17:75090363 . . 0 26 hm5C_associated_SNPs_12693 0 0 1 0 0 unknown 1 0.500231643921228 1 0.999536712157544 hm5C_site_14680 DeepMRMD:1;iRNA_m5C:0.999536712157544 14681 chr17 75090363 75090363 1 + G A rs149508879 75090359 + 75090339 75090379 41 ATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGT ATCCACCTGCCTTGGCCTCCCAAAATGCTGGGATTACAGGT < 41bp 1 0.484444976288187 1 0.651015162467957 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SNHG20 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75090359 chr17:75090363 . . 0 25 hm5C_associated_SNPs_12694 0 0 1 0 0 unknown 1 0.500231644035482 0.697969675064086 0.999536711929036 hm5C_site_14681 DeepMRMD:0.697969675064086;iRNA_m5C:0.999536711929036 14682 chr17 75090363 75090363 1 + G A rs149508879 75090366 + 75090346 75090386 41 TGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCT TGCCTTGGCCTCCCAAAATGCTGGGATTACAGGTATGAGCT < 41bp 1 0.619107785748403 1 0.724806785583496 experiment 0.761784428503195 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SNHG20 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75090366 chr17:75090363 . . 0 18 hm5C_associated_SNPs_12695 0 0 1 0 0 unknown 1 0.500231643922414 0.550386428833008 0.999536712155172 hm5C_site_14682 DeepMRMD:0.550386428833008;iRNA_m5C:0.999536712155172 14683 chr17 75090385 75090385 1 + C T rs546511692 75090366 + 75090346 75090386 41 TGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCT TGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTATGAGTT < 41bp 1 0.527913328275564 1 0.538271427154541 experiment 0.944173343448871 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SNHG20 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75090366 chr17:75090385 . . 0 40 hm5C_associated_SNPs_12696 0 0 1 0 0 unknown 1 0.500231643921876 0.923457145690918 0.999536712156248 hm5C_site_14683 DeepMRMD:0.923457145690918;iRNA_m5C:0.999536712156248 14684 chr17 75090826 75090826 1 + A G rs3760141 75090806 + 75090786 75090826 41 GATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGA GATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.188246409758326 1 0.464189141988754 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SNHG20 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75090806 chr17:75090826 . . 0 41 hm5C_associated_SNPs_12697 0 0 1 0 0 unknown 1 0.500231643926418 1 0.999536712147164 hm5C_site_14684 DeepMRMD:1;iRNA_m5C:0.999536712147164 14685 chr17 75090826 75090826 1 + A G rs3760141 75090807 + 75090787 75090827 41 ATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGAC ATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC < 41bp 1 0.357953937979584 1 0.54917299747467 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SNHG20 ENSG00000234912 ncRNA_exonic Human processed_transcript chr17:75090807 chr17:75090826 . . 0 40 hm5C_associated_SNPs_12698 0 0 1 0 0 unknown 1 0.500231643921096 0.90165400505066 0.999536712157807 hm5C_site_14685 DeepMRMD:0.90165400505066;iRNA_m5C:0.999536712157807 14686 chr17 75369437 75369437 1 + G A rs568226661 75369434 + 75369414 75369454 41 CCCCCATTCATTCAGCTGAGCCAGGGGGCCTAGGGGCTCCT CCCCCATTCATTCAGCTGAGCCAAGGGGCCTAGGGGCTCCT < 41bp 1 0.0625845279547994 1 0.0651458501815796 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEPT9 ENSG00000184640 UTR5 Human protein_coding chr17:75369434 chr17:75369437 . . 0 24 hm5C_associated_SNPs_12700 0 0 1 0 0 Ribosome 1 0.500231643970528 1 0.999536712058945 hm5C_site_14686 DeepMRMD:1;iRNA_m5C:0.999536712058945 14687 chr17 75494705 75494705 1 + A G rs2627223 75494704 + 75494684 75494724 41 AGCAGCGCCATGGCCAACGGCATGGAGGAGAAGGAGCCAGA AGCAGCGCCATGGCCAACGGCGTGGAGGAGAAGGAGCCAGA < 41bp 1 0.468062592343531 1 0.540229558944702 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 CDS Human protein_coding chr17:75494704 chr17:75494705 nonsynonymous SNV 0.063 0 22 hm5C_associated_SNPs_12701 1 0 1 0 0 Ribosome 1 0.500232446841577 0.919540882110596 0.999535106316846 hm5C_site_14687 DeepMRMD:0.919540882110596;iRNA_m5C:0.999535106316846 Hereditary Neuralgic Amyotrophy (HNA) Hereditary Neuralgic Amyotrophy (HNA) 14688 chr17 75494947 75494947 1 + G A rs560243481 75494927 + 75494907 75494947 41 GTCAGTGATGAGGCCGCGGCCTCCCCGAGGTTGTGGGGAGG GTCAGTGATGAGGCCGCGGCCTCCCCGAGGTTGTGGGGAGA < 41bp 1 0.174802644049578 1 0.0875540971755981 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 UTR3 Human protein_coding chr17:75494927 chr17:75494947 . . 0 41 hm5C_associated_SNPs_12702 1 0 1 0 0 Ribosome 1 0.50023164910279 1 0.99953670179442 hm5C_site_14688 DeepMRMD:1;iRNA_m5C:0.99953670179442 Hereditary Neuralgic Amyotrophy (HNA) Hereditary Neuralgic Amyotrophy (HNA) 14689 chr17 75494947 75494947 1 + G A rs560243481 75494929 + 75494909 75494949 41 CAGTGATGAGGCCGCGGCCTCCCCGAGGTTGTGGGGAGGCT CAGTGATGAGGCCGCGGCCTCCCCGAGGTTGTGGGGAGACT < 41bp 1 0.261044649026047 1 0.339856088161469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 UTR3 Human protein_coding chr17:75494929 chr17:75494947 . . 0 39 hm5C_associated_SNPs_12703 1 0 1 0 0 Ribosome 1 0.500229463091499 1 0.999541073817002 hm5C_site_14689 DeepMRMD:1;iRNA_m5C:0.999541073817002 Hereditary Neuralgic Amyotrophy (HNA) Hereditary Neuralgic Amyotrophy (HNA) 14690 chr17 75494947 75494947 1 + G A rs560243481 75494930 + 75494910 75494950 41 AGTGATGAGGCCGCGGCCTCCCCGAGGTTGTGGGGAGGCTG AGTGATGAGGCCGCGGCCTCCCCGAGGTTGTGGGGAGACTG < 41bp 1 0.578956792706098 1 0.614406287670135 experiment 0.842086414587804 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 UTR3 Human protein_coding chr17:75494930 chr17:75494947 . . 0 38 hm5C_associated_SNPs_12704 1 0 1 0 0 Ribosome 1 0.500231643922517 0.77118742465973 0.999536712154966 hm5C_site_14690 DeepMRMD:0.77118742465973;iRNA_m5C:0.999536712154966 Hereditary Neuralgic Amyotrophy (HNA) Hereditary Neuralgic Amyotrophy (HNA) 14691 chr17 75494947 75494947 1 + G A rs560243481 75494931 + 75494911 75494951 41 GTGATGAGGCCGCGGCCTCCCCGAGGTTGTGGGGAGGCTGC GTGATGAGGCCGCGGCCTCCCCGAGGTTGTGGGGAGACTGC < 41bp 1 0.498813433322474 1 0.616983771324158 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 UTR3 Human protein_coding chr17:75494931 chr17:75494947 . . 0 37 hm5C_associated_SNPs_12705 1 0 1 0 0 Ribosome 1 0.500231634375573 0.766032457351684 0.999536731248853 hm5C_site_14691 DeepMRMD:0.766032457351684;iRNA_m5C:0.999536731248853 Hereditary Neuralgic Amyotrophy (HNA) Hereditary Neuralgic Amyotrophy (HNA) 14692 chr17 76137754 76137754 1 + C G rs375098771 76137759 + 76137739 76137779 41 AGCTGGGATTTGAACCCAGGCACTCGGGCTCCAGAGCCACA AGCTGGGATTTGAACGCAGGCACTCGGGCTCCAGAGCCACA < 41bp 1 0.180114306700613 1 0.0756364762783051 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMC8 ENSG00000167895 UTR3 Human protein_coding chr17:76137759 chr17:76137754 . . 0 16 hm5C_associated_SNPs_12707 0 0 0 0 0 chromatin 1 0.500231637751574 1 0.999536724496853 hm5C_site_14692 DeepMRMD:1;iRNA_m5C:0.999536724496853 14693 chr17 76161740 76161740 1 + G A rs9906000 76161755 + 76161735 76161775 41 TAGCCGGGCGTGGTGGTGCGCACCTGTAGTCCCAGCTACTC TAGCCAGGCGTGGTGGTGCGCACCTGTAGTCCCAGCTACTC < 41bp 1 0.568157704804201 1 0.023506760597229 experiment 0.863684590391599 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf99 ENSG00000187997 intronic Human protein_coding chr17:76161755 chr17:76161740 . . 0 6 hm5C_associated_SNPs_12708 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644149142 1 0.999536711701716 hm5C_site_14693 DeepMRMD:1;iRNA_m5C:0.999536711701716 14694 chr17 76161740 76161740 1 + G A rs9906000 76161757 + 76161737 76161777 41 GCCGGGCGTGGTGGTGCGCACCTGTAGTCCCAGCTACTCGG GCCAGGCGTGGTGGTGCGCACCTGTAGTCCCAGCTACTCGG < 41bp 1 0.319229267266433 1 0.114517122507095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf99 ENSG00000187997 intronic Human protein_coding chr17:76161757 chr17:76161740 . . 0 4 hm5C_associated_SNPs_12709 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643915268 1 0.999536712169464 hm5C_site_14694 DeepMRMD:1;iRNA_m5C:0.999536712169464 14695 chr17 76161763 76161763 1 + G A rs62079089 76161755 + 76161735 76161775 41 TAGCCGGGCGTGGTGGTGCGCACCTGTAGTCCCAGCTACTC TAGCCGGGCGTGGTGGTGCGCACCTGTAATCCCAGCTACTC < 41bp 1 0.55749795861276 1 0.0300260484218597 experiment 0.88500408277448 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf99 ENSG00000187997 intronic Human protein_coding chr17:76161755 chr17:76161763 . . 0 29 hm5C_associated_SNPs_12711 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921089 1 0.999536712157821 hm5C_site_14695 DeepMRMD:1;iRNA_m5C:0.999536712157821 14696 chr17 76161763 76161763 1 + G A rs62079089 76161757 + 76161737 76161777 41 GCCGGGCGTGGTGGTGCGCACCTGTAGTCCCAGCTACTCGG GCCGGGCGTGGTGGTGCGCACCTGTAATCCCAGCTACTCGG < 41bp 1 0.325688636195014 1 0.157261788845062 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf99 ENSG00000187997 intronic Human protein_coding chr17:76161757 chr17:76161763 . . 0 27 hm5C_associated_SNPs_12712 0 0 0 0 0 Endoplasmic reticulum 1 0.50023164392109 1 0.999536712157819 hm5C_site_14696 DeepMRMD:1;iRNA_m5C:0.999536712157819 14697 chr17 76199843 76199843 1 + G A rs535446174 76199854 + 76199834 76199874 41 GTGGCTCACGCCTGTAATCCCAACACTTTGGAAGGGCAAGG GTGGCTCACACCTGTAATCCCAACACTTTGGAAGGGCAAGG < 41bp 1 0.259166051739802 1 0.428623706102371 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFMID ENSG00000183077 intronic Human protein_coding chr17:76199854 chr17:76199843 . . 0 10 hm5C_associated_SNPs_12714 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14697 DeepMRMD:1;iRNA_m5C:0.999536712157815 14698 chr17 76203433 76203433 1 + T C rs139479211 76203419 + 76203399 76203439 41 CTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCA CTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCA < 41bp 1 0.677644648675541 1 0.45573416352272 experiment 0.644710702648918 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203419 chr17:76203433 . . 0 35 hm5C_associated_SNPs_12715 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14698 DeepMRMD:1;iRNA_m5C:0.999536712157815 14699 chr17 76203433 76203433 1 + T C rs139479211 76203436 + 76203416 76203456 41 GTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCCACCTCC GTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCACCTCC < 41bp 1 0.473230049685786 1 0.0318554043769836 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203436 chr17:76203433 . . 0 18 hm5C_associated_SNPs_12716 0 0 0 0 0 Nucleus 1 0.500231645624691 1 0.999536708750618 hm5C_site_14699 DeepMRMD:1;iRNA_m5C:0.999536708750618 14700 chr17 76203433 76203433 1 + T C rs139479211 76203438 + 76203418 76203458 41 GCAGTGGCGTGATCTTGGCTCACTGCAACCTCCACCTCCCG GCAGTGGCGTGATCTCGGCTCACTGCAACCTCCACCTCCCG < 41bp 1 0.487824483592645 1 0.0472551286220551 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203438 chr17:76203433 . . 0 16 hm5C_associated_SNPs_12717 0 0 0 0 0 Nucleus 1 0.500231669429072 1 0.999536661141856 hm5C_site_14700 DeepMRMD:1;iRNA_m5C:0.999536661141856 14701 chr17 76203433 76203433 1 + T C rs139479211 76203443 + 76203423 76203463 41 GGCGTGATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTC GGCGTGATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTC < 41bp 1 0.468260209878642 1 0.18189463019371 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203443 chr17:76203433 . . 0 11 hm5C_associated_SNPs_12718 0 0 0 0 0 Nucleus 1 0.500231644834672 1 0.999536710330655 hm5C_site_14701 DeepMRMD:1;iRNA_m5C:0.999536710330655 14702 chr17 76203433 76203433 1 + T C rs139479211 76203446 + 76203426 76203466 41 GTGATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAG GTGATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAG < 41bp 1 0.0799210240649454 1 0.178848296403885 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203446 chr17:76203433 . . 0 8 hm5C_associated_SNPs_12719 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_14702 DeepMRMD:1;iRNA_m5C:0.999536712157816 14703 chr17 76203433 76203433 1 + T C rs139479211 76203449 + 76203429 76203469 41 ATCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAA ATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAA < 41bp 1 0.234865906740788 1 0.0654459893703461 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203449 chr17:76203433 . . 0 5 hm5C_associated_SNPs_12721 0 0 0 0 0 Nucleus 1 0.500231509421385 1 0.999536981157229 hm5C_site_14703 DeepMRMD:1;iRNA_m5C:0.999536981157229 14704 chr17 76203433 76203433 1 + T C rs139479211 76203450 + 76203430 76203470 41 TCTTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAAT TCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAAT < 41bp 1 0.428185434060181 1 0.0978880822658539 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203450 chr17:76203433 . . 0 4 hm5C_associated_SNPs_12722 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_14704 DeepMRMD:1;iRNA_m5C:0.999536712157814 14705 chr17 76203433 76203433 1 + T C rs139479211 76203452 + 76203432 76203472 41 TTGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTC TCGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTC < 41bp 1 0.0550338162759993 1 0.062779039144516 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203452 chr17:76203433 . . 0 2 hm5C_associated_SNPs_12723 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14705 DeepMRMD:1;iRNA_m5C:0.999536712157815 14706 chr17 76203433 76203433 1 + T C rs139479211 76203453 + 76203433 76203473 41 TGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCT CGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCT < 41bp 1 0.338448682371361 1 0.312876582145691 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203453 chr17:76203433 . . 0 1 hm5C_associated_SNPs_12724 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14706 DeepMRMD:1;iRNA_m5C:0.999536712157815 14707 chr17 76203489 76203489 1 + T C rs149666228 76203474 + 76203454 76203494 41 TCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGCA TCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGCA < 41bp 1 0.473958186835452 1 0.173207938671112 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203474 chr17:76203489 . . 0 36 hm5C_associated_SNPs_12725 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_14707 DeepMRMD:1;iRNA_m5C:0.999536712157816 14708 chr17 76203489 76203489 1 + T C rs149666228 76203475 + 76203455 76203495 41 CCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGCAG CCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGCAG < 41bp 1 0.63876685692046 1 0.126625210046768 experiment 0.72246628615908 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203475 chr17:76203489 . . 0 35 hm5C_associated_SNPs_12726 0 0 0 0 0 Nucleus 1 0.500231642551954 1 0.999536714896093 hm5C_site_14708 DeepMRMD:1;iRNA_m5C:0.999536714896093 14709 chr17 76203489 76203489 1 + T C rs149666228 76203478 + 76203458 76203498 41 GGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGCAGCTG GGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGCAGCTG < 41bp 1 0.36830140248672 1 0.0759133696556091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203478 chr17:76203489 . . 0 32 hm5C_associated_SNPs_12727 0 0 0 0 0 Nucleus 1 0.50023164390764 1 0.999536712184719 hm5C_site_14709 DeepMRMD:1;iRNA_m5C:0.999536712184719 14710 chr17 76203489 76203489 1 + T C rs149666228 76203479 + 76203459 76203499 41 GGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGCAGCTGG GGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGCAGCTGG < 41bp 1 0.652712307107615 1 0.254803031682968 experiment 0.694575385784771 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203479 chr17:76203489 . . 0 31 hm5C_associated_SNPs_12728 0 0 0 0 0 Nucleus 1 0.500231643907469 1 0.999536712185062 hm5C_site_14710 DeepMRMD:1;iRNA_m5C:0.999536712185062 14711 chr17 76203489 76203489 1 + T C rs149666228 76203481 + 76203461 76203501 41 TTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGA TTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGCAGCTGGGA < 41bp 1 0.569828873857029 1 0.740923523902893 experiment 0.860342252285942 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203481 chr17:76203489 . . 0 29 hm5C_associated_SNPs_12729 0 0 0 0 0 Nucleus 1 0.500231643921092 0.518152952194214 0.999536712157815 hm5C_site_14711 DeepMRMD:0.518152952194214;iRNA_m5C:0.999536712157815 14712 chr17 76203489 76203489 1 + T C rs149666228 76203484 + 76203464 76203504 41 AAGCAATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGACTA AAGCAATTCTCCTGCCTCAGCCTCCCGAGCAGCTGGGACTA < 41bp 1 0.125234689332342 1 0.15191063284874 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203484 chr17:76203489 . . 0 26 hm5C_associated_SNPs_12730 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14712 DeepMRMD:1;iRNA_m5C:0.999536712157815 14713 chr17 76203489 76203489 1 + T C rs149666228 76203485 + 76203465 76203505 41 AGCAATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGACTAC AGCAATTCTCCTGCCTCAGCCTCCCGAGCAGCTGGGACTAC < 41bp 1 0.44548045516161 1 0.396162033081055 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203485 chr17:76203489 . . 0 25 hm5C_associated_SNPs_12731 0 0 0 0 0 Nucleus 1 0.500231643921032 1 0.999536712157935 hm5C_site_14713 DeepMRMD:1;iRNA_m5C:0.999536712157935 14714 chr17 76203489 76203489 1 + T C rs149666228 76203487 + 76203467 76203507 41 CAATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGACTACAG CAATTCTCCTGCCTCAGCCTCCCGAGCAGCTGGGACTACAG < 41bp 1 0.69265882586761 1 0.658114850521088 experiment 0.614682348264781 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203487 chr17:76203489 . . 0 23 hm5C_associated_SNPs_12732 0 0 0 0 0 Nucleus 1 0.500207546785344 0.683770298957824 0.999584906429312 hm5C_site_14714 DeepMRMD:0.683770298957824;iRNA_m5C:0.999584906429312 14715 chr17 76203489 76203489 1 + T C rs149666228 76203488 + 76203468 76203508 41 AATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGACTACAGG AATTCTCCTGCCTCAGCCTCCCGAGCAGCTGGGACTACAGG < 41bp 1 0.344016858469356 1 0.707385718822479 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203488 chr17:76203489 . . 0 22 hm5C_associated_SNPs_12733 0 0 0 0 0 Nucleus 1 0.500231643921092 0.585228562355042 0.999536712157815 hm5C_site_14715 DeepMRMD:0.585228562355042;iRNA_m5C:0.999536712157815 14716 chr17 76203489 76203489 1 + T C rs149666228 76203493 + 76203473 76203513 41 TCCTGCCTCAGCCTCCTGAGCAGCTGGGACTACAGGCGCCT TCCTGCCTCAGCCTCCCGAGCAGCTGGGACTACAGGCGCCT < 41bp 1 0.59252256791911 1 0.127957105636597 experiment 0.814954864161781 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203493 chr17:76203489 . . 0 17 hm5C_associated_SNPs_12734 0 0 0 0 0 Nucleus 1 0.50025062471098 1 0.999498750578039 hm5C_site_14716 DeepMRMD:1;iRNA_m5C:0.999498750578039 14717 chr17 76203489 76203489 1 + T C rs149666228 76203509 + 76203489 76203529 41 TGAGCAGCTGGGACTACAGGCGCCTGCCATCATGCCTGGCT CGAGCAGCTGGGACTACAGGCGCCTGCCATCATGCCTGGCT < 41bp 1 0.528671722647882 1 0.296352505683899 experiment 0.942656554704235 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203509 chr17:76203489 . . 0 1 hm5C_associated_SNPs_12736 0 0 0 0 0 Nucleus 1 0.500231643791109 1 0.999536712417782 hm5C_site_14717 DeepMRMD:1;iRNA_m5C:0.999536712417782 14718 chr17 76203513 76203513 1 + T C rs551630008 76203493 + 76203473 76203513 41 TCCTGCCTCAGCCTCCTGAGCAGCTGGGACTACAGGCGCCT TCCTGCCTCAGCCTCCTGAGCAGCTGGGACTACAGGCGCCC < 41bp 1 0.666139850575659 1 0.157763481140137 experiment 0.667720298848682 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203493 chr17:76203513 . . 0 41 hm5C_associated_SNPs_12737 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_14718 DeepMRMD:1;iRNA_m5C:0.999536712157815 14719 chr17 76203513 76203513 1 + T C rs551630008 76203509 + 76203489 76203529 41 TGAGCAGCTGGGACTACAGGCGCCTGCCATCATGCCTGGCT TGAGCAGCTGGGACTACAGGCGCCCGCCATCATGCCTGGCT < 41bp 1 0.427087245313004 1 0.223047614097595 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203509 chr17:76203513 . . 0 25 hm5C_associated_SNPs_12739 0 0 0 0 0 Nucleus 1 0.500231643921106 1 0.999536712157788 hm5C_site_14719 DeepMRMD:1;iRNA_m5C:0.999536712157788 14720 chr17 76203600 76203600 1 + T A rs9903738 76203617 + 76203597 76203637 41 TTGTGATTCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTC TTGAGATTCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTC < 41bp 1 0.133118140840681 1 0.153891205787659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203617 chr17:76203600 . . 0 4 hm5C_associated_SNPs_12740 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14720 DeepMRMD:1;iRNA_m5C:0.999536712157815 14721 chr17 76203600 76203600 1 + T A rs9903738 76203618 + 76203598 76203638 41 TGTGATTCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTCC TGAGATTCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTCC < 41bp 1 0.373080125049859 1 0.165235877037048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203618 chr17:76203600 . . 0 3 hm5C_associated_SNPs_12741 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14721 DeepMRMD:1;iRNA_m5C:0.999536712157815 14722 chr17 76203600 76203600 1 + T A rs9903738 76203620 + 76203600 76203640 41 TGATTCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTCCAG AGATTCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTCCAG < 41bp 1 0.447762744948369 1 0.293869078159332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203620 chr17:76203600 . . 0 1 hm5C_associated_SNPs_12742 0 0 1 0 0 Nucleus 1 0.500231643921098 1 0.999536712157804 hm5C_site_14722 DeepMRMD:1;iRNA_m5C:0.999536712157804 14723 chr17 76203652 76203652 1 + T C rs60968356 76203648 + 76203628 76203668 41 GCTGGGATTCCAGGCGTGAGCCACTGCGCCCGGCCAGAATG GCTGGGATTCCAGGCGTGAGCCACCGCGCCCGGCCAGAATG < 41bp 1 0.468998364766335 1 0.220529854297638 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203648 chr17:76203652 . . 0 25 hm5C_associated_SNPs_12743 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_14723 DeepMRMD:1;iRNA_m5C:0.999536712157815 14724 chr17 76203652 76203652 1 + T C rs60968356 76203656 + 76203636 76203676 41 TCCAGGCGTGAGCCACTGCGCCCGGCCAGAATGGCATTATA TCCAGGCGTGAGCCACCGCGCCCGGCCAGAATGGCATTATA < 41bp 1 0.572805325946905 1 0.249207049608231 experiment 0.85438934810619 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203656 chr17:76203652 . . 0 17 hm5C_associated_SNPs_12745 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14724 DeepMRMD:1;iRNA_m5C:0.999536712157815 14725 chr17 76420373 76420373 1 + G A rs12942703 76420355 + 76420335 76420375 41 CTGGGCTCTACCCCAAAAGGCTTCAGGCCAGCTGCCACGGC CTGGGCTCTACCCCAAAAGGCTTCAGGCCAGCTGCCACAGC < 41bp 1 0.28175387877925 1 0.0515163540840149 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGS1 ENSG00000087157 UTR3 Human protein_coding chr17:76420355 chr17:76420373 . . 0 39 hm5C_associated_SNPs_12747 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14725 DeepMRMD:1;iRNA_m5C:0.999536712157815 14726 chr17 77043894 77043894 1 + C T rs35435268 77043900 + 77043880 77043920 41 TACTGCTACGTGCCCGGCCTCTACTTCTTCAGCCTCAACGT TACTGCTACGTGCCTGGCCTCTACTTCTTCAGCCTCAACGT < 41bp 1 0.294046484461727 1 0.0464951395988464 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77043900 chr17:77043894 synonymous SNV . 0 15 hm5C_associated_SNPs_12748 0 0 0 0 0 exosome 1 0.500231643605769 1 0.999536712788463 hm5C_site_14726 DeepMRMD:1;iRNA_m5C:0.999536712788463 14727 chr17 77758691 77758691 1 + G A rs3751957 77758688 + 77758668 77758708 41 CCGCCCAGCACTGGACAGAACCCGTCAGTGTCCGTTCAGAC CCGCCCAGCACTGGACAGAACCCATCAGTGTCCGTTCAGAC < 41bp 1 0.097355524798208 1 0.046326607465744 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77758688 chr17:77758691 synonymous SNV . 0 24 hm5C_associated_SNPs_12749 0 0 1 0 0 chromatin 1 0.500231643921059 1 0.999536712157882 hm5C_site_14727 DeepMRMD:1;iRNA_m5C:0.999536712157882 14728 chr17 77758691 77758691 1 + G A rs3751957 77758689 + 77758669 77758709 41 CGCCCAGCACTGGACAGAACCCGTCAGTGTCCGTTCAGACC CGCCCAGCACTGGACAGAACCCATCAGTGTCCGTTCAGACC < 41bp 1 0.0401264879534395 1 0.126224130392075 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77758689 chr17:77758691 synonymous SNV . 0 23 hm5C_associated_SNPs_12750 0 0 1 0 0 chromatin 1 0.500186729580967 1 0.999626540838065 hm5C_site_14728 DeepMRMD:1;iRNA_m5C:0.999626540838065 14729 chr17 77760715 77760715 1 + C G rs569776049 77760701 + 77760681 77760721 41 TGTGCCTTTGGGGAGGGACCCATGTCCATGGCTTCGTTGAG TGTGCCTTTGGGGAGGGACCCATGTCCATGGCTTGGTTGAG < 41bp 1 0.318527764069288 1 0.136140793561935 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CBX2 ENSG00000173894 UTR3 Human protein_coding chr17:77760701 chr17:77760715 . . 0 35 hm5C_associated_SNPs_12752 0 0 1 0 0 chromatin 1 0.500231643921099 1 0.999536712157802 hm5C_site_14729 DeepMRMD:1;iRNA_m5C:0.999536712157802 14730 chr17 78075606 78075606 1 + C T rs190152638 78075595 + 78075575 78075615 41 ACCTCGGTGACGCGAAGGACCCCGGCCACCTCTAGGTTCTC ACCTCGGTGACGCGAAGGACCCCGGCCACCTTTAGGTTCTC < 41bp 1 0.334582389705635 1 0.0532124042510986 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 UTR5 Human protein_coding chr17:78075595 chr17:78075606 . . 0 32 hm5C_associated_SNPs_12753 1 0 0 0 1 Endoplasmic reticulum 1 0.500231643920768 1 0.999536712158464 hm5C_site_14730 DeepMRMD:1;iRNA_m5C:0.999536712158464 not specified not specified 14731 chr17 78078642 78078642 1 + C A rs2229222 78078646 + 78078626 78078666 41 CAGTGCGACGTCCCCCCCAACAGCCGCTTCGATTGCGCCCC CAGTGCGACGTCCCCCACAACAGCCGCTTCGATTGCGCCCC < 41bp 1 0.373162027787127 1 0.324353694915771 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78078646 chr17:78078642 nonsynonymous SNV 0.307 2 17 hm5C_associated_SNPs_12754 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_14731 DeepMRMD:1;iRNA_m5C:0.999536712157815 14732 chr17 78078643 78078643 1 + C A rs146615896 78078646 + 78078626 78078666 41 CAGTGCGACGTCCCCCCCAACAGCCGCTTCGATTGCGCCCC CAGTGCGACGTCCCCCCAAACAGCCGCTTCGATTGCGCCCC < 41bp 1 0.446609642504594 1 0.683048903942108 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78078646 chr17:78078643 synonymous SNV . 0 18 hm5C_associated_SNPs_12755 1 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.633902192115784 0.999536712157815 hm5C_site_14732 DeepMRMD:0.633902192115784;iRNA_m5C:0.999536712157815 not specified not specified 14733 chr17 78078656 78078656 1 + G A rs1800299 78078646 + 78078626 78078666 41 CAGTGCGACGTCCCCCCCAACAGCCGCTTCGATTGCGCCCC CAGTGCGACGTCCCCCCCAACAGCCGCTTCAATTGCGCCCC < 41bp 1 0.372133896353815 1 0.693355560302734 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78078646 chr17:78078656 nonsynonymous SNV 0.507 3 31 hm5C_associated_SNPs_12756 3 0 1 0 0 Endoplasmic reticulum 1 0.500231643921094 0.613288879394532 0.999536712157813 hm5C_site_14733 DeepMRMD:0.613288879394532;iRNA_m5C:0.999536712157813 Acid alpha-glucosidase, allele 2 Acid alpha-glucosidase, allele 2 14734 chr17 78078736 78078736 1 + G A rs574947353 78078746 + 78078726 78078766 41 AGCAGGGGCTGCAGGGAGCCCAGATGGGGCAGCCCTGGTGC AGCAGGGGCTACAGGGAGCCCAGATGGGGCAGCCCTGGTGC < 41bp 1 0.678067049062398 1 0.849809169769287 experiment 0.643865901875204 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78078746 chr17:78078736 synonymous SNV . 0 11 hm5C_associated_SNPs_12757 1 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.300381660461426 0.999536712157815 hm5C_site_14734 DeepMRMD:0.300381660461426;iRNA_m5C:0.999536712157815 not specified not specified 14735 chr17 78078753 78078753 1 + G A rs138034915 78078746 + 78078726 78078766 41 AGCAGGGGCTGCAGGGAGCCCAGATGGGGCAGCCCTGGTGC AGCAGGGGCTGCAGGGAGCCCAGATGGAGCAGCCCTGGTGC < 41bp 1 0.677101641857912 1 0.880834937095642 experiment 0.645796716284176 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78078746 chr17:78078753 nonsynonymous SNV 0.913 0 28 hm5C_associated_SNPs_12758 1 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.238330125808716 0.999536712157815 hm5C_site_14735 DeepMRMD:0.238330125808716;iRNA_m5C:0.999536712157815 not specified not specified 14736 chr17 78078753 78078753 1 + G A rs138034915 78078760 + 78078740 78078780 41 GGAGCCCAGATGGGGCAGCCCTGGTGCTTCTTCCCACCCAG GGAGCCCAGATGGAGCAGCCCTGGTGCTTCTTCCCACCCAG < 41bp 1 0.686768741507105 1 0.390459775924683 experiment 0.62646251698579 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78078760 chr17:78078753 nonsynonymous SNV 0.913 0 14 hm5C_associated_SNPs_12759 1 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_14736 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 14737 chr17 78087041 78087041 1 + G A rs1800309 78087058 + 78087038 78087078 41 AGCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT AGCAAGCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT < 41bp 1 0.654243173045477 1 0.332828342914581 experiment 0.691513653909045 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78087058 chr17:78087041 nonsynonymous SNV 0.911 1 4 hm5C_associated_SNPs_12760 3 0 1 0 1 Endoplasmic reticulum 1 0.500231644574058 1 0.999536710851885 hm5C_site_14737 DeepMRMD:1;iRNA_m5C:0.999536710851885 Acid alpha-glucosidase, allele 4 Acid alpha-glucosidase, allele 4 14738 chr17 78172328 78172328 1 + C A rs73429414 78172335 + 78172315 78172355 41 CATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACC CATCTTCATCCACAGGGTCACCCCGGGCTCGGCGGCGGACC < 41bp 1 0.320766622942086 1 0.0603547692298889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172335 chr17:78172328 synonymous SNV . 0 14 hm5C_associated_SNPs_12761 0 0 0 0 1 nucleus 1 0.500039813760134 1 0.999920372479732 hm5C_site_14738 DeepMRMD:1;iRNA_m5C:0.999920372479732 14739 chr17 78172328 78172328 1 + C A rs73429414 78172336 + 78172316 78172356 41 ATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACCA ATCTTCATCCACAGGGTCACCCCGGGCTCGGCGGCGGACCA < 41bp 1 0.516588774493095 1 0.652013182640076 experiment 0.966822451013809 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172336 chr17:78172328 synonymous SNV . 0 13 hm5C_associated_SNPs_12762 0 0 0 0 1 nucleus 1 0.500231643921092 0.695973634719848 0.999536712157815 hm5C_site_14739 DeepMRMD:0.695973634719848;iRNA_m5C:0.999536712157815 14740 chr17 78172344 78172344 1 + C T rs201285077 78172335 + 78172315 78172355 41 CATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACC CATCTTCATCCACCGGGTCACCCCGGGCTTGGCGGCGGACC < 41bp 1 0.299919687471923 1 0.103425770998001 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172335 chr17:78172344 nonsynonymous SNV 0.292 4 30 hm5C_associated_SNPs_12763 0 0 0 0 1 nucleus 1 0.500231598012603 1 0.999536803974794 hm5C_site_14740 DeepMRMD:1;iRNA_m5C:0.999536803974794 14741 chr17 78172344 78172344 1 + C T rs201285077 78172336 + 78172316 78172356 41 ATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACCA ATCTTCATCCACCGGGTCACCCCGGGCTTGGCGGCGGACCA < 41bp 1 0.544773322569741 1 0.80250072479248 experiment 0.910453354860517 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172336 chr17:78172344 nonsynonymous SNV 0.292 4 29 hm5C_associated_SNPs_12764 0 0 0 0 1 nucleus 1 0.500231643921097 0.39499855041504 0.999536712157806 hm5C_site_14741 DeepMRMD:0.39499855041504;iRNA_m5C:0.999536712157806 14742 chr17 78172345 78172345 1 + G A rs113127952 78172335 + 78172315 78172355 41 CATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACC CATCTTCATCCACCGGGTCACCCCGGGCTCAGCGGCGGACC < 41bp 1 0.365058698970245 1 0.0434909164905548 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172335 chr17:78172345 synonymous SNV . 0 31 hm5C_associated_SNPs_12765 0 0 0 0 1 nucleus 1 0.500231597393257 1 0.999536805213486 hm5C_site_14742 DeepMRMD:1;iRNA_m5C:0.999536805213486 14743 chr17 78172345 78172345 1 + G A rs113127952 78172336 + 78172316 78172356 41 ATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACCA ATCTTCATCCACCGGGTCACCCCGGGCTCAGCGGCGGACCA < 41bp 1 0.558877198239803 1 0.739258766174316 experiment 0.882245603520393 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172336 chr17:78172345 synonymous SNV . 0 30 hm5C_associated_SNPs_12766 0 0 0 0 1 nucleus 1 0.50023164923475 0.521482467651368 0.999536701530501 hm5C_site_14743 DeepMRMD:0.521482467651368;iRNA_m5C:0.999536701530501 14744 chr17 78201686 78201686 1 + C T rs61011315 78201694 + 78201674 78201714 41 GATGCGGGACCACGTGCCTCCCGTCCACCCCGAGATGCCCC GATGCGGGACCATGTGCCTCCCGTCCACCCCGAGATGCCCC < 41bp 1 0.0954288642045732 1 0.520676910877228 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78201694 chr17:78201686 synonymous SNV . 0 13 hm5C_associated_SNPs_12767 0 0 1 0 1 chromatin 1 0.500231643921016 0.958646178245544 0.999536712157969 hm5C_site_14744 DeepMRMD:0.958646178245544;iRNA_m5C:0.999536712157969 14745 chr17 78201687 78201687 1 + G A rs151155883 78201694 + 78201674 78201714 41 GATGCGGGACCACGTGCCTCCCGTCCACCCCGAGATGCCCC GATGCGGGACCACATGCCTCCCGTCCACCCCGAGATGCCCC < 41bp 1 0.0778597733462918 1 0.308976203203201 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78201694 chr17:78201687 nonsynonymous SNV 0.069 1 14 hm5C_associated_SNPs_12768 0 0 1 0 1 chromatin 1 0.500231643921016 1 0.999536712157967 hm5C_site_14745 DeepMRMD:1;iRNA_m5C:0.999536712157967 14746 chr17 78310124 78310124 1 + T C rs527433585 78310125 + 78310105 78310145 41 TCAGTGCATTCATGAAGCATCTGAAAAAGCTGTGGAAGGCT TCAGTGCATTCATGAAGCACCTGAAAAAGCTGTGGAAGGCT < 41bp 1 0.11751416003537 1 0.410942196846008 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78310125 chr17:78310124 synonymous SNV . 0 20 hm5C_associated_SNPs_12769 0 0 1 0 1 Nucleus 1 0.500231554563684 1 0.999536890872631 hm5C_site_14746 DeepMRMD:1;iRNA_m5C:0.999536890872631 14747 chr17 78318479 78318479 1 + G A rs143002142 78318498 + 78318478 78318518 41 CGTACACGTGTACCCCAGTTCAGTTTTCTTGACATCTTCCC CATACACGTGTACCCCAGTTCAGTTTTCTTGACATCTTCCC < 41bp 1 0.0475492556872428 1 0.0349644422531128 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78318498 chr17:78318479 nonsynonymous SNV 0.001 0 2 hm5C_associated_SNPs_12770 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14747 DeepMRMD:1;iRNA_m5C:0.999536712157815 14748 chr17 78318507 78318507 1 + T C rs78912458 78318498 + 78318478 78318518 41 CGTACACGTGTACCCCAGTTCAGTTTTCTTGACATCTTCCC CGTACACGTGTACCCCAGTTCAGTTTTCTCGACATCTTCCC < 41bp 1 0.0619021807580486 1 0.0270332992076874 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78318498 chr17:78318507 synonymous SNV . 0 30 hm5C_associated_SNPs_12771 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14748 DeepMRMD:1;iRNA_m5C:0.999536712157815 14749 chr17 78321151 78321151 1 + G A rs115867721 78321138 + 78321118 78321158 41 GCTTTGGACATCTTTCTGGCCAATTTGCCCGAGGCCAAGTG GCTTTGGACATCTTTCTGGCCAATTTGCCCGAGACCAAGTG < 41bp 1 0.0346643914536634 1 0.0515511631965637 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78321138 chr17:78321151 nonsynonymous SNV 0.070 0 34 hm5C_associated_SNPs_12772 0 0 1 0 0 Nucleus 1 0.500231645495592 1 0.999536709008815 hm5C_site_14749 DeepMRMD:1;iRNA_m5C:0.999536709008815 14750 chr17 78321157 78321157 1 + T C rs61600413 78321138 + 78321118 78321158 41 GCTTTGGACATCTTTCTGGCCAATTTGCCCGAGGCCAAGTG GCTTTGGACATCTTTCTGGCCAATTTGCCCGAGGCCAAGCG < 41bp 1 0.0368048469071402 1 0.0398610830307007 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78321138 chr17:78321157 nonsynonymous SNV 0.003 0 40 hm5C_associated_SNPs_12773 0 0 1 0 0 Nucleus 1 0.500231512300215 1 0.99953697539957 hm5C_site_14750 DeepMRMD:1;iRNA_m5C:0.99953697539957 14751 chr17 78327358 78327358 1 + G A rs7216493 78327355 - 78327335 78327375 41 GATGTGCTGGCCTCCGTCTCCATCGCCTCCTCATGGCCGTC GATGTGCTGGCCTCCGTTTCCATCGCCTCCTCATGGCCGTC < 41bp 1 0.545603502932635 1 0.570274710655212 experiment 0.908792994134729 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RNF213 ENSG00000173821 CDS Human protein_coding chr17:78327355 chr17:78327358 synonymous SNV . 0 18 hm5C_associated_SNPs_12774 0 0 0 0 0 Nucleus 1 0.500231643974405 0.859450578689576 0.999536712051189 hm5C_site_14751 DeepMRMD:0.859450578689576;iRNA_m5C:0.999536712051189 14752 chr17 78327375 78327375 1 + C T rs139113160 78327355 - 78327335 78327375 41 GATGTGCTGGCCTCCGTCTCCATCGCCTCCTCATGGCCGTC AATGTGCTGGCCTCCGTCTCCATCGCCTCCTCATGGCCGTC < 41bp 1 0.453679881214367 1 0.504136085510254 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RNF213 ENSG00000173821 CDS Human protein_coding chr17:78327355 chr17:78327375 nonsynonymous SNV 0.000 1 1 hm5C_associated_SNPs_12775 0 0 0 0 0 Nucleus 1 0.500231643921092 0.991727828979492 0.999536712157816 hm5C_site_14752 DeepMRMD:0.991727828979492;iRNA_m5C:0.999536712157816 14753 chr17 78349663 78349663 1 + C T rs562763648 78349659 + 78349639 78349679 41 CCCACAATGCAAGCCTCCACCCCACGCCAGAGGTGAGTAAC CCCACAATGCAAGCCTCCACCCCATGCCAGAGGTGAGTAAC < 41bp 1 0.0335245418765895 1 0.156344473361969 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78349659 chr17:78349663 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_12776 0 0 1 0 1 Nucleus 1 0.500231650510217 1 0.999536698979567 hm5C_site_14753 DeepMRMD:1;iRNA_m5C:0.999536698979567 14754 chr17 78349664 78349664 1 + G A rs371433961 78349659 + 78349639 78349679 41 CCCACAATGCAAGCCTCCACCCCACGCCAGAGGTGAGTAAC CCCACAATGCAAGCCTCCACCCCACACCAGAGGTGAGTAAC < 41bp 1 0.0203882823648402 1 0.196544200181961 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78349659 chr17:78349664 synonymous SNV . 0 26 hm5C_associated_SNPs_12777 0 0 1 0 1 Nucleus 1 0.500231906851659 1 0.999536186296683 hm5C_site_14754 DeepMRMD:1;iRNA_m5C:0.999536186296683 14755 chr17 78350165 78350165 1 + G A rs150148627 78350171 + 78350151 78350191 41 TCCTGATATCAGCCGTTTTGCAACATCGCTCGTGGACAATT TCCTGATATCAGCCATTTTGCAACATCGCTCGTGGACAATT < 41bp 1 0.193879012993641 1 0.33419930934906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78350171 chr17:78350165 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_12778 0 0 1 0 1 Nucleus 1 0.50023164392109 1 0.99953671215782 hm5C_site_14755 DeepMRMD:1;iRNA_m5C:0.99953671215782 14756 chr17 78350175 78350175 1 + A G rs138587836 78350171 + 78350151 78350191 41 TCCTGATATCAGCCGTTTTGCAACATCGCTCGTGGACAATT TCCTGATATCAGCCGTTTTGCAACGTCGCTCGTGGACAATT < 41bp 1 0.139279502130664 1 0.531487882137299 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78350171 chr17:78350175 synonymous SNV . 0 25 hm5C_associated_SNPs_12779 0 0 1 0 1 Nucleus 1 0.500231643920893 0.937024235725402 0.999536712158213 hm5C_site_14756 DeepMRMD:0.937024235725402;iRNA_m5C:0.999536712158213 14757 chr17 78362500 78362500 1 + T C rs114649707 78362510 + 78362490 78362530 41 GTGATCCCGATAAACCTGATCCTGTGCACGGGGCTTTCTGC GTGATCCCGACAAACCTGATCCTGTGCACGGGGCTTTCTGC < 41bp 1 0.0118736652138005 1 0.0769124925136566 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC100294362 ENSG00000263069 ncRNA_intronic Human antisense chr17:78362510 chr17:78362500 . . 0 11 hm5C_associated_SNPs_12780 0 0 1 0 1 unknown 1 0.500231643921493 1 0.999536712157014 hm5C_site_14757 DeepMRMD:1;iRNA_m5C:0.999536712157014 14758 chr17 78362518 78362518 1 + C T rs377349704 78362510 + 78362490 78362530 41 GTGATCCCGATAAACCTGATCCTGTGCACGGGGCTTTCTGC GTGATCCCGATAAACCTGATCCTGTGCATGGGGCTTTCTGC < 41bp 1 0.0111427905174659 1 0.0438079833984375 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC100294362 ENSG00000263069 ncRNA_intronic Human antisense chr17:78362510 chr17:78362518 . . 0 29 hm5C_associated_SNPs_12781 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_14758 DeepMRMD:1;iRNA_m5C:0.999536712157815 14759 chr17 78704389 78704389 1 + A G rs181909860 78704396 + 78704376 78704416 41 TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAGC TCCCTCTGTCCATGTATGACCTGCAGACGTGGATGGGCAGC < 41bp 1 0.516160747268663 1 0.309237509965897 experiment 0.967678505462675 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPTOR ENSG00000141564 CDS Human protein_coding chr17:78704396 chr17:78704389 nonsynonymous SNV 0.997 2 14 hm5C_associated_SNPs_12783 0 0 1 0 1 Nucleus 1 0.500231664666697 1 0.999536670666605 hm5C_site_14759 DeepMRMD:1;iRNA_m5C:0.999536670666605 14760 chr17 78938783 78938783 1 + A G rs73359530 78938785 + 78938765 78938805 41 CAGCATCACTGAGCAGGAAGCGCACAGCCCACCCTCCCCGC CAGCATCACTGAGCAGGAGGCGCACAGCCCACCCTCCCCGC < 41bp 1 0.36505909714135 1 0.180076748132706 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPTOR ENSG00000141564 UTR3 Human protein_coding chr17:78938785 chr17:78938783 . . 0 19 hm5C_associated_SNPs_12784 0 0 1 0 0 Nucleus 1 0.500231643807828 1 0.999536712384345 hm5C_site_14760 DeepMRMD:1;iRNA_m5C:0.999536712384345 14761 chr17 78938783 78938783 1 + A G rs73359530 78938787 + 78938767 78938807 41 GCATCACTGAGCAGGAAGCGCACAGCCCACCCTCCCCGCAC GCATCACTGAGCAGGAGGCGCACAGCCCACCCTCCCCGCAC < 41bp 1 0.571956544902329 1 0.288365721702576 experiment 0.856086910195342 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPTOR ENSG00000141564 UTR3 Human protein_coding chr17:78938787 chr17:78938783 . . 0 17 hm5C_associated_SNPs_12785 0 0 1 0 0 Nucleus 1 0.500230584155643 1 0.999538831688713 hm5C_site_14761 DeepMRMD:1;iRNA_m5C:0.999538831688713 14762 chr17 78938803 78938803 1 + C T rs60558073 78938785 + 78938765 78938805 41 CAGCATCACTGAGCAGGAAGCGCACAGCCCACCCTCCCCGC CAGCATCACTGAGCAGGAAGCGCACAGCCCACCCTCCCTGC < 41bp 1 0.417699524307778 1 0.238872557878494 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPTOR ENSG00000141564 UTR3 Human protein_coding chr17:78938785 chr17:78938803 . . 0 39 hm5C_associated_SNPs_12786 0 0 1 0 0 Nucleus 1 0.500231643920686 1 0.999536712158627 hm5C_site_14762 DeepMRMD:1;iRNA_m5C:0.999536712158627 14763 chr17 78938803 78938803 1 + C T rs60558073 78938787 + 78938767 78938807 41 GCATCACTGAGCAGGAAGCGCACAGCCCACCCTCCCCGCAC GCATCACTGAGCAGGAAGCGCACAGCCCACCCTCCCTGCAC < 41bp 1 0.563722799113667 1 0.226308614015579 experiment 0.872554401772665 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPTOR ENSG00000141564 UTR3 Human protein_coding chr17:78938787 chr17:78938803 . . 0 37 hm5C_associated_SNPs_12787 0 0 1 0 0 Nucleus 1 0.500231642507662 1 0.999536714984677 hm5C_site_14763 DeepMRMD:1;iRNA_m5C:0.999536714984677 14764 chr17 78938966 78938966 1 + G A rs566208205 78938976 + 78938956 78938996 41 CCCCACAGGCGCGGGGACAGCAGCCCGACCTGTGGTCTCCA CCCCACAGGCACGGGGACAGCAGCCCGACCTGTGGTCTCCA < 41bp 1 0.531875753773136 1 0.322697401046753 experiment 0.936248492453729 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPTOR ENSG00000141564 UTR3 Human protein_coding chr17:78938976 chr17:78938966 . . 0 11 hm5C_associated_SNPs_12788 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14764 DeepMRMD:1;iRNA_m5C:0.999536712157815 14765 chr17 78938967 78938967 1 + C T rs533608881 78938976 + 78938956 78938996 41 CCCCACAGGCGCGGGGACAGCAGCCCGACCTGTGGTCTCCA CCCCACAGGCGTGGGGACAGCAGCCCGACCTGTGGTCTCCA < 41bp 1 0.515324953490794 1 0.431595474481583 experiment 0.969350093018413 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPTOR ENSG00000141564 UTR3 Human protein_coding chr17:78938976 chr17:78938967 . . 0 12 hm5C_associated_SNPs_12789 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14765 DeepMRMD:1;iRNA_m5C:0.999536712157815 14766 chr17 78939964 78939964 1 + C T rs1045626 78939955 + 78939935 78939975 41 TCCACCCTGGAGCCCACCCCCATGGGCACCGCGTGCCGCCT TCCACCCTGGAGCCCACCCCCATGGGCACTGCGTGCCGCCT < 41bp 1 0.467560135458783 1 0.81573212146759 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPTOR ENSG00000141564 UTR3 Human protein_coding chr17:78939955 chr17:78939964 . . 0 30 hm5C_associated_SNPs_12790 0 1 1 0 0 Nucleus 1 0.500231643921092 0.36853575706482 0.999536712157816 hm5C_site_14766 DeepMRMD:0.36853575706482;iRNA_m5C:0.999536712157816 14767 chr17 79202800 79202800 1 + T C rs372573540 79202783 - 79202763 79202803 41 AACATCGTCCCAGAGGACAGCAGCCAAAGAGCCTCCTGGCT AACGTCGTCCCAGAGGACAGCAGCCAAAGAGCCTCCTGGCT < 41bp 1 0.203684112329126 1 0.381449788808823 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79202783 chr17:79202800 synonymous SNV . 0 4 hm5C_associated_SNPs_12791 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14767 DeepMRMD:1;iRNA_m5C:0.999536712157815 14768 chr17 79213403 79213403 1 + G T rs374420845 79213405 + 79213385 79213425 41 GTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTA GTGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTA < 41bp 1 0.485909820628338 1 0.212707132101059 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213405 chr17:79213403 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_12792 0 0 1 0 3 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14768 DeepMRMD:1;iRNA_m5C:0.999536712157815 14769 chr17 79213403 79213403 1 + G T rs374420845 79213408 + 79213388 79213428 41 CGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTAAGG CGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGTAAGG < 41bp 1 0.678142103914542 1 0.817249894142151 experiment 0.643715792170917 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213408 chr17:79213403 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_12795 0 0 1 0 3 unknown 1 0.500231643921091 0.365500211715698 0.999536712157817 hm5C_site_14769 DeepMRMD:0.365500211715698;iRNA_m5C:0.999536712157817 14770 chr17 79373580 79373580 1 + C G rs547318668 79373568 + 79373548 79373588 41 CCGCGACTTTGCGCCGCCGCCGCATCTGCTGTCGGAGCGCG CCGCGACTTTGCGCCGCCGCCGCATCTGCTGTGGGAGCGCG < 41bp 1 0.259775063228488 1 0.608698129653931 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BAHCC1 ENSG00000171282;ENSG00000263053 CDS Human other chr17:79373568 chr17:79373580 nonsynonymous SNV 0.981 3 33 hm5C_associated_SNPs_12796 0 0 1 0 0 chromatin 1 0.500231692748118 0.782603740692138 0.999536614503765 hm5C_site_14770 DeepMRMD:0.782603740692138;iRNA_m5C:0.999536614503765 14771 chr17 79408924 79408924 1 + C T rs116138822 79408935 + 79408915 79408955 41 CTTCCCCAGCGTGGCCCGGGCCGCCCCTGCCCACCCCATGG CTTCCCCAGTGTGGCCCGGGCCGCCCCTGCCCACCCCATGG < 41bp 1 0.107210431002199 1 0.120653510093689 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79408935 chr17:79408924 synonymous SNV . 0 10 hm5C_associated_SNPs_12797 0 0 1 0 1 chromatin 1 0.500231642483383 1 0.999536715033234 hm5C_site_14771 DeepMRMD:1;iRNA_m5C:0.999536715033234 14772 chr17 79409177 79409177 1 + G A rs145916430 79409170 + 79409150 79409190 41 GACGGGCACTGCAGGGAGGGCGGCCCCGCACCCCGAGGGGC GACGGGCACTGCAGGGAGGGCGGCCCCACACCCCGAGGGGC < 41bp 1 0.239284139329809 1 0.591564834117889 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79409170 chr17:79409177 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_12798 0 0 0 0 0 chromatin 1 0.500231643921093 0.816870331764222 0.999536712157814 hm5C_site_14772 DeepMRMD:0.816870331764222;iRNA_m5C:0.999536712157814 14773 chr17 79409189 79409189 1 + G A rs12952981 79409170 + 79409150 79409190 41 GACGGGCACTGCAGGGAGGGCGGCCCCGCACCCCGAGGGGC GACGGGCACTGCAGGGAGGGCGGCCCCGCACCCCGAGGGAC < 41bp 1 0.254615658550788 1 0.370364725589752 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79409170 chr17:79409189 nonsynonymous SNV 0.124 0 40 hm5C_associated_SNPs_12799 0 0 1 0 0 chromatin 1 0.500231643923173 1 0.999536712153654 hm5C_site_14773 DeepMRMD:1;iRNA_m5C:0.999536712153654 14774 chr17 79409189 79409189 1 + G A rs12952981 79409200 + 79409180 79409220 41 CCCCGAGGGGCCTGCGAGGGCCGCCCCAAGCACCTCACCTC CCCCGAGGGACCTGCGAGGGCCGCCCCAAGCACCTCACCTC < 41bp 1 0.112889829953882 1 0.065203845500946 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79409200 chr17:79409189 nonsynonymous SNV 0.124 0 10 hm5C_associated_SNPs_12800 0 0 1 0 0 chromatin 1 0.50023164392263 1 0.999536712154739 hm5C_site_14774 DeepMRMD:1;iRNA_m5C:0.999536712154739 14775 chr17 79409189 79409189 1 + G A rs12952981 79409201 + 79409181 79409221 41 CCCGAGGGGCCTGCGAGGGCCGCCCCAAGCACCTCACCTCC CCCGAGGGACCTGCGAGGGCCGCCCCAAGCACCTCACCTCC < 41bp 1 0.155450753085269 1 0.399713397026062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79409201 chr17:79409189 nonsynonymous SNV 0.124 0 9 hm5C_associated_SNPs_12801 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14775 DeepMRMD:1;iRNA_m5C:0.999536712157815 14776 chr17 79409189 79409189 1 + G A rs12952981 79409203 + 79409183 79409223 41 CGAGGGGCCTGCGAGGGCCGCCCCAAGCACCTCACCTCCTG CGAGGGACCTGCGAGGGCCGCCCCAAGCACCTCACCTCCTG < 41bp 1 0.407643865928366 1 0.42812916636467 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79409203 chr17:79409189 nonsynonymous SNV 0.124 0 7 hm5C_associated_SNPs_12802 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14776 DeepMRMD:1;iRNA_m5C:0.999536712157815 14777 chr17 79409189 79409189 1 + G A rs12952981 79409204 + 79409184 79409224 41 GAGGGGCCTGCGAGGGCCGCCCCAAGCACCTCACCTCCTGC GAGGGACCTGCGAGGGCCGCCCCAAGCACCTCACCTCCTGC < 41bp 1 0.245669587733117 1 0.550740540027618 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79409204 chr17:79409189 nonsynonymous SNV 0.124 0 6 hm5C_associated_SNPs_12803 0 0 1 0 0 chromatin 1 0.500231643920137 0.898518919944764 0.999536712159725 hm5C_site_14777 DeepMRMD:0.898518919944764;iRNA_m5C:0.999536712159725 14778 chr17 79412096 79412096 1 + C T rs571452787 79412087 + 79412067 79412107 41 TGGCCCCCCATGTACGGGGGCCGGGGCCCCGCCTCTCACAT TGGCCCCCCATGTACGGGGGCCGGGGCCCTGCCTCTCACAT < 41bp 1 0.145501899852391 1 0.505963504314423 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412087 chr17:79412096 synonymous SNV . 0 30 hm5C_associated_SNPs_12804 0 0 0 0 1 chromatin 1 0.500231643921092 0.988072991371154 0.999536712157815 hm5C_site_14778 DeepMRMD:0.988072991371154;iRNA_m5C:0.999536712157815 14779 chr17 79412096 79412096 1 + C T rs571452787 79412088 + 79412068 79412108 41 GGCCCCCCATGTACGGGGGCCGGGGCCCCGCCTCTCACATG GGCCCCCCATGTACGGGGGCCGGGGCCCTGCCTCTCACATG < 41bp 1 0.357993933241989 1 0.491654396057129 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412088 chr17:79412096 synonymous SNV . 0 29 hm5C_associated_SNPs_12805 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14779 DeepMRMD:1;iRNA_m5C:0.999536712157815 14780 chr17 79418798 79418798 1 + G A rs368653379 79418808 + 79418788 79418828 41 CACTGCCCCAGCGCAGCCGCCCACAGCCAACCCCTGCAGCG CACTGCCCCAACGCAGCCGCCCACAGCCAACCCCTGCAGCG < 41bp 1 0.14880829677415 1 0.0682482719421387 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BAHCC1 ENSG00000171282 CDS Human other chr17:79418808 chr17:79418798 nonsynonymous SNV 0.000 0 11 hm5C_associated_SNPs_12806 0 0 1 0 1 chromatin 1 0.5002316945248 1 0.9995366109504 hm5C_site_14780 DeepMRMD:1;iRNA_m5C:0.9995366109504 14781 chr17 79425714 79425714 1 + G A rs200134076 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCAGA < 41bp 1 0.0197054257039284 1 0.029114156961441 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425714 nonsynonymous SNV 0.708 3 39 hm5C_associated_SNPs_12807 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14781 DeepMRMD:1;iRNA_m5C:0.999536712157815 14782 chr17 79425985 79425985 1 + C T rs35206106 79425992 + 79425972 79426012 41 GCGCAGAGCAGAGCGCCGCCCTAGGTGAGCAGGGCCAGGAA GCGCAGAGCAGAGTGCCGCCCTAGGTGAGCAGGGCCAGGAA < 41bp 1 0.536901151298178 1 0.850783467292786 experiment 0.926197697403645 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425992 chr17:79425985 synonymous SNV . 0 14 hm5C_associated_SNPs_12808 0 0 0 0 1 chromatin 1 0.500231643921092 0.298433065414428 0.999536712157815 hm5C_site_14782 DeepMRMD:0.298433065414428;iRNA_m5C:0.999536712157815 14783 chr17 79425988 79425988 1 + C T rs190483037 79425992 + 79425972 79426012 41 GCGCAGAGCAGAGCGCCGCCCTAGGTGAGCAGGGCCAGGAA GCGCAGAGCAGAGCGCTGCCCTAGGTGAGCAGGGCCAGGAA < 41bp 1 0.602721004407532 1 0.813000917434692 experiment 0.794557991184937 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425992 chr17:79425988 synonymous SNV . 0 17 hm5C_associated_SNPs_12809 0 0 0 0 1 chromatin 1 0.500231643921092 0.373998165130616 0.999536712157815 hm5C_site_14783 DeepMRMD:0.373998165130616;iRNA_m5C:0.999536712157815 14784 chr17 79663479 79663479 1 + C T rs555406175 79663489 + 79663469 79663509 41 GGAGAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC GGAGAAGCTTTGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC < 41bp 1 0.67224463136624 1 0.848601400852203 experiment 0.655510737267521 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663489 chr17:79663479 nonsynonymous SNV 0.994 3 11 hm5C_associated_SNPs_12812 0 0 1 0 1 Nucleus 1 0.500231643920774 0.302797198295594 0.999536712158452 hm5C_site_14784 DeepMRMD:0.302797198295594;iRNA_m5C:0.999536712158452 14785 chr17 79663508 79663508 1 + G A rs534593378 79663489 + 79663469 79663509 41 GGAGAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC GGAGAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAAC < 41bp 1 0.674226771218104 1 0.826051950454712 experiment 0.651546457563792 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663489 chr17:79663508 synonymous SNV . 0 40 hm5C_associated_SNPs_12813 0 0 1 0 1 Nucleus 1 0.500231643921092 0.347896099090576 0.999536712157815 hm5C_site_14785 DeepMRMD:0.347896099090576;iRNA_m5C:0.999536712157815 14786 chr17 79663771 79663771 1 + C T rs148583822 79663761 + 79663741 79663781 41 CGCGCAGATGCCCGCCTTCCCCCTGCCCTACGCCCAGGCAT CGCGCAGATGCCCGCCTTCCCCCTGCCCTATGCCCAGGCAT < 41bp 1 0.321511226334681 1 0.174337476491928 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663761 chr17:79663771 synonymous SNV . 0 31 hm5C_associated_SNPs_12814 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14786 DeepMRMD:1;iRNA_m5C:0.999536712157815 14787 chr17 79663981 79663981 1 + C T rs187324452 79663977 + 79663957 79663997 41 TGCACGGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGC TGCACGGCGTGTACATGAGCCAGCTGGCCCCTGCCGCTGGC < 41bp 1 0.641070908884282 1 0.570172667503357 experiment 0.717858182231436 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663977 chr17:79663981 nonsynonymous SNV 0.433 1 25 hm5C_associated_SNPs_12815 0 0 1 0 1 Nucleus 1 0.50023170169421 0.859654664993286 0.999536596611581 hm5C_site_14787 DeepMRMD:0.859654664993286;iRNA_m5C:0.999536596611581 14788 chr17 79663981 79663981 1 + C T rs187324452 79663980 + 79663960 79664000 41 ACGGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGCCCC ACGGCGTGTACATGAGCCAGCTGGCCCCTGCCGCTGGCCCC < 41bp 1 0.609624216742437 1 0.31233686208725 experiment 0.780751566515125 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663980 chr17:79663981 nonsynonymous SNV 0.433 1 22 hm5C_associated_SNPs_12816 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14788 DeepMRMD:1;iRNA_m5C:0.999536712157815 14789 chr17 79668135 79668135 1 + G T rs56058441 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATCTCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.196904735536253 1 0.419178783893585 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668135 nonsynonymous SNV 0.106 0 8 hm5C_associated_SNPs_12817 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14789 DeepMRMD:1;iRNA_m5C:0.999536712157815 14790 chr17 79671714 79671714 1 + T C rs11546280 79671721 + 79671701 79671741 41 GGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC GGGTGGTGTGATGCCTGGGGCTGTCCCTGCTGCAGCAGCCC < 41bp 1 0.110583062504823 1 0.0519255697727203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671721 chr17:79671714 nonsynonymous SNV 0.023 0 14 hm5C_associated_SNPs_12818 1 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14790 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 14791 chr17 79852322 79852322 1 + G A rs370106520 79852334 + 79852314 79852354 41 AGCCAGTCGTCCTGTTCCCTCCGCCGCAGGCTCTGCTGCCA AGCCAGTCATCCTGTTCCCTCCGCCGCAGGCTCTGCTGCCA < 41bp 1 0.133069553837896 1 0.470676839351654 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANAPC11 ENSG00000141552 UTR5 Human protein_coding chr17:79852334 chr17:79852322 . . 0 9 hm5C_associated_SNPs_12819 0 0 1 0 0 Ribosome 1 0.500231643921098 1 0.999536712157804 hm5C_site_14791 DeepMRMD:1;iRNA_m5C:0.999536712157804 14792 chr17 79852322 79852322 1 + G A rs370106520 79852337 + 79852317 79852357 41 CAGTCGTCCTGTTCCCTCCGCCGCAGGCTCTGCTGCCATGA CAGTCATCCTGTTCCCTCCGCCGCAGGCTCTGCTGCCATGA < 41bp 1 0.229006410117469 1 0.405149519443512 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANAPC11 ENSG00000141552 UTR5 Human protein_coding chr17:79852337 chr17:79852322 . . 0 6 hm5C_associated_SNPs_12820 0 0 1 0 0 Ribosome 1 0.500231656884934 1 0.999536686230131 hm5C_site_14792 DeepMRMD:1;iRNA_m5C:0.999536686230131 14793 chr17 79852336 79852336 1 + G A rs150002435 79852334 + 79852314 79852354 41 AGCCAGTCGTCCTGTTCCCTCCGCCGCAGGCTCTGCTGCCA AGCCAGTCGTCCTGTTCCCTCCACCGCAGGCTCTGCTGCCA < 41bp 1 0.0964287242886559 1 0.506059229373932 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANAPC11 ENSG00000141552 UTR5 Human protein_coding chr17:79852334 chr17:79852336 . . 0 23 hm5C_associated_SNPs_12821 0 0 0 0 0 Ribosome 1 0.500231643921107 0.987881541252136 0.999536712157787 hm5C_site_14793 DeepMRMD:0.987881541252136;iRNA_m5C:0.999536712157787 14794 chr17 79852336 79852336 1 + G A rs150002435 79852337 + 79852317 79852357 41 CAGTCGTCCTGTTCCCTCCGCCGCAGGCTCTGCTGCCATGA CAGTCGTCCTGTTCCCTCCACCGCAGGCTCTGCTGCCATGA < 41bp 1 0.243629273608684 1 0.326469302177429 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANAPC11 ENSG00000141552 UTR5 Human protein_coding chr17:79852337 chr17:79852336 . . 0 20 hm5C_associated_SNPs_12822 0 0 0 0 0 Ribosome 1 0.500231652910332 1 0.999536694179336 hm5C_site_14794 DeepMRMD:1;iRNA_m5C:0.999536694179336 14795 chr17 79852339 79852339 1 + G A rs145009430 79852334 + 79852314 79852354 41 AGCCAGTCGTCCTGTTCCCTCCGCCGCAGGCTCTGCTGCCA AGCCAGTCGTCCTGTTCCCTCCGCCACAGGCTCTGCTGCCA < 41bp 1 0.131475498865237 1 0.654621839523315 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANAPC11 ENSG00000141552 UTR5 Human protein_coding chr17:79852334 chr17:79852339 . . 0 26 hm5C_associated_SNPs_12823 0 0 1 0 0 Ribosome 1 0.500231643921101 0.69075632095337 0.999536712157798 hm5C_site_14795 DeepMRMD:0.69075632095337;iRNA_m5C:0.999536712157798 14796 chr17 79852339 79852339 1 + G A rs145009430 79852337 + 79852317 79852357 41 CAGTCGTCCTGTTCCCTCCGCCGCAGGCTCTGCTGCCATGA CAGTCGTCCTGTTCCCTCCGCCACAGGCTCTGCTGCCATGA < 41bp 1 0.141987771161751 1 0.280246675014496 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANAPC11 ENSG00000141552 UTR5 Human protein_coding chr17:79852337 chr17:79852339 . . 0 23 hm5C_associated_SNPs_12824 0 0 1 0 0 Ribosome 1 0.500232563411244 1 0.999534873177512 hm5C_site_14796 DeepMRMD:1;iRNA_m5C:0.999534873177512 14797 chr17 79860180 79860180 1 + C A rs140557486 79860179 + 79860159 79860199 41 CCGGTCCGCGACACTGGCGGCCGCCGCCCTGGCGCTGTGCC CCGGTCCGCGACACTGGCGGCAGCCGCCCTGGCGCTGTGCC < 41bp 1 0.257281223527891 1 0.498294353485107 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NPB ENSG00000183979 CDS Human protein_coding chr17:79860179 chr17:79860180 synonymous SNV . 0 22 hm5C_associated_SNPs_12825 0 0 0 0 0 nucleolus 1 0.500231643956062 1 0.999536712087875 hm5C_site_14797 DeepMRMD:1;iRNA_m5C:0.999536712087875 14798 chr17 79887574 79887574 1 + A C rs534064452 79887562 + 79887542 79887582 41 GGGATACTGCGAGAGAGGCCCACAGGTTTCCAAGCATCCCT GGGATACTGCGAGAGAGGCCCACAGGTTTCCACGCATCCCT < 41bp 1 0.506866572833422 1 0.59459662437439 experiment 0.986266854333156 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAFG-AS1 ENSG00000265688 ncRNA_exonic Human antisense chr17:79887562 chr17:79887574 . . 0 33 hm5C_associated_SNPs_12826 0 0 1 0 0 unknown 1 0.500231643921428 0.81080675125122 0.999536712157143 hm5C_site_14798 DeepMRMD:0.81080675125122;iRNA_m5C:0.999536712157143 14799 chr17 80193928 80193928 1 + C G rs144588703 80193913 + 80193893 80193933 41 GGCCGTGGTGGACGAGGGCCCCACAGGCGTCAAGGCCCCTG GGCCGTGGTGGACGAGGGCCCCACAGGCGTCAAGGGCCCTG < 41bp 1 0.620538945485496 1 0.0620055496692657 experiment 0.758922109029007 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC16A3 ENSG00000141526;ENSG00000141526 exonic;splicing Human other chr17:80193913 chr17:80193928 nonsynonymous SNV 0.679 2 36 hm5C_associated_SNPs_12827 0 0 1 0 1 Ribosome 1 0.500231642964638 1 0.999536714070724 hm5C_site_14799 DeepMRMD:1;iRNA_m5C:0.999536714070724 14800 chr17 80442218 80442218 1 + G A rs537825663 80442212 + 80442192 80442232 41 CCCAGGTGCTGCATTCGTGCCCTTTTGGGGGAAGGTAAGAT CCCAGGTGCTGCATTCGTGCCCTTTTAGGGGAAGGTAAGAT < 41bp 1 0.0231770702739126 1 0.070751965045929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NARF ENSG00000141562 intronic Human protein_coding chr17:80442212 chr17:80442218 . . 0 27 hm5C_associated_SNPs_12828 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14800 DeepMRMD:1;iRNA_m5C:0.999536712157815 14801 chr17 80529614 80529614 1 + G A rs117692271 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG CACCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG < 41bp 1 0.0766952000192322 1 0.0701687932014465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529614 synonymous SNV . 0 2 hm5C_associated_SNPs_12829 0 0 1 0 1 Cytosol 1 0.500231600210889 1 0.999536799578222 hm5C_site_14801 DeepMRMD:1;iRNA_m5C:0.999536799578222 14802 chr17 80544015 80544015 1 + A T rs188729988 80544032 + 80544012 80544052 41 GGCAGCCGTGCTGGCCCCTCCTAAGGCAGAGGCCCAGGAGA GGCTGCCGTGCTGGCCCCTCCTAAGGCAGAGGCCCAGGAGA < 41bp 1 0.455748064574641 1 0.746717572212219 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80544032 chr17:80544015 synonymous SNV . 0 4 hm5C_associated_SNPs_12830 0 0 1 0 1 Cytosol 1 0.500231643921098 0.506564855575562 0.999536712157804 hm5C_site_14802 DeepMRMD:0.506564855575562;iRNA_m5C:0.999536712157804 14803 chr17 80544018 80544018 1 + C T rs11558342 80544032 + 80544012 80544052 41 GGCAGCCGTGCTGGCCCCTCCTAAGGCAGAGGCCCAGGAGA GGCAGCTGTGCTGGCCCCTCCTAAGGCAGAGGCCCAGGAGA < 41bp 1 0.418117781693554 1 0.757814168930054 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80544032 chr17:80544018 synonymous SNV . 0 7 hm5C_associated_SNPs_12831 0 0 1 0 1 Cytosol 1 0.500231643936396 0.484371662139892 0.999536712127208 hm5C_site_14803 DeepMRMD:0.484371662139892;iRNA_m5C:0.999536712127208 14804 chr17 80558010 80558010 1 + A G rs145717279 80558002 + 80557982 80558022 41 ACCTGCTTCTCAGAGCATCACGGGGCCCACCAAGAAGTGCC ACCTGCTTCTCAGAGCATCACGGGGCCCGCCAAGAAGTGCC < 41bp 1 0.526883968111419 1 0.822692036628723 experiment 0.946232063777162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOXK2 ENSG00000141568 intronic Human protein_coding chr17:80558002 chr17:80558010 . . 0 29 hm5C_associated_SNPs_12832 0 0 0 0 1 Cytosol 1 0.500231643921092 0.354615926742554 0.999536712157815 hm5C_site_14804 DeepMRMD:0.354615926742554;iRNA_m5C:0.999536712157815 14805 chr17 80559252 80559252 1 + C T rs35881749 80559268 + 80559248 80559288 41 ACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC ACAATGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC < 41bp 1 0.253035510383254 1 0.400786817073822 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559268 chr17:80559252 synonymous SNV . 0 5 hm5C_associated_SNPs_12834 0 0 1 0 1 Cytosol 1 0.50023164392106 1 0.99953671215788 hm5C_site_14805 DeepMRMD:1;iRNA_m5C:0.99953671215788 14806 chr17 80559266 80559266 1 + A C rs35659703 80559268 + 80559248 80559288 41 ACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC ACAACGGTGACCAGCCGGCGCAGCCGGAGCTGAAGCGGATC < 41bp 1 0.260609093870502 1 0.340181291103363 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559268 chr17:80559266 nonsynonymous SNV 0.069 2 19 hm5C_associated_SNPs_12836 0 0 1 0 1 Cytosol 1 0.500231643463641 1 0.999536713072718 hm5C_site_14806 DeepMRMD:1;iRNA_m5C:0.999536713072718 14807 chr17 80559266 80559266 1 + A C rs35659703 80559277 + 80559257 80559297 41 ACCAGCCGGAGCAGCCGGAGCTGAAGCGGATCAAGACAGAA ACCAGCCGGCGCAGCCGGAGCTGAAGCGGATCAAGACAGAA < 41bp 1 0.621823136522008 1 0.486319988965988 experiment 0.756353726955984 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559277 chr17:80559266 nonsynonymous SNV 0.069 2 10 hm5C_associated_SNPs_12837 0 0 1 0 1 Cytosol 1 0.500231643971001 1 0.999536712057999 hm5C_site_14807 DeepMRMD:1;iRNA_m5C:0.999536712057999 14808 chr17 80559272 80559272 1 + C T rs35832203 80559268 + 80559248 80559288 41 ACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC ACAACGGTGACCAGCCGGAGCAGCTGGAGCTGAAGCGGATC < 41bp 1 0.340273880728364 1 0.52760374546051 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559268 chr17:80559272 nonsynonymous SNV 0.047 3 25 hm5C_associated_SNPs_12839 0 0 1 0 1 Cytosol 1 0.500231643921092 0.94479250907898 0.999536712157815 hm5C_site_14808 DeepMRMD:0.94479250907898;iRNA_m5C:0.999536712157815 14809 chr17 80559272 80559272 1 + C T rs35832203 80559277 + 80559257 80559297 41 ACCAGCCGGAGCAGCCGGAGCTGAAGCGGATCAAGACAGAA ACCAGCCGGAGCAGCTGGAGCTGAAGCGGATCAAGACAGAA < 41bp 1 0.600263007473499 1 0.476087301969528 experiment 0.799473985053001 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559277 chr17:80559272 nonsynonymous SNV 0.047 3 16 hm5C_associated_SNPs_12840 0 0 1 0 1 Cytosol 1 0.500231643917395 1 0.999536712165209 hm5C_site_14809 DeepMRMD:1;iRNA_m5C:0.999536712165209 14810 chr17 80559291 80559291 1 + G C rs117690256 80559277 + 80559257 80559297 41 ACCAGCCGGAGCAGCCGGAGCTGAAGCGGATCAAGACAGAA ACCAGCCGGAGCAGCCGGAGCTGAAGCGGATCAACACAGAA < 41bp 1 0.600705164931579 1 0.629766225814819 experiment 0.798589670136842 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559277 chr17:80559291 nonsynonymous SNV 0.002 4 35 hm5C_associated_SNPs_12841 0 0 1 0 0 Cytosol 1 0.500231643921102 0.740467548370362 0.999536712157797 hm5C_site_14810 DeepMRMD:0.740467548370362;iRNA_m5C:0.999536712157797 14811 chr17 80680760 80680760 1 + C A rs191683466 80680754 + 80680734 80680774 41 TGGTGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG TGGTGACGTGCTGTGGATACCTCCCCAAGGTGAGTGCACGG < 41bp 1 0.483227080955001 1 0.476396709680557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680754 chr17:80680760 nonsynonymous SNV 0.996 2 27 hm5C_associated_SNPs_12843 0 0 1 0 2 Ribosome 1 0.500231643921149 1 0.999536712157702 hm5C_site_14811 DeepMRMD:1;iRNA_m5C:0.999536712157702 14812 chr17 80888252 80888252 1 + G A rs141244531 80888270 + 80888250 80888290 41 CCGCACCAGCCGCTTGGGGCCAGACCTTCGCGTCTCTGCAG CCACACCAGCCGCTTGGGGCCAGACCTTCGCGTCTCTGCAG < 41bp 1 0.200869844885057 1 0.389008074998856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control TBCD ENSG00000141556 intronic Human protein_coding chr17:80888270 chr17:80888252 . . 0 3 hm5C_associated_SNPs_12844 0 0 1 0 0 Nucleus 1 0.500231933098694 1 0.999536133802613 hm5C_site_14812 DeepMRMD:1;iRNA_m5C:0.999536133802613 14813 chr17 80888272 80888272 1 + G A rs6502016 80888270 + 80888250 80888290 41 CCGCACCAGCCGCTTGGGGCCAGACCTTCGCGTCTCTGCAG CCGCACCAGCCGCTTGGGGCCAAACCTTCGCGTCTCTGCAG < 41bp 1 0.117989802358878 1 0.215238571166992 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control TBCD ENSG00000141556 intronic Human protein_coding chr17:80888270 chr17:80888272 . . 0 23 hm5C_associated_SNPs_12845 0 0 1 0 0 Nucleus 1 0.500231801665321 1 0.999536396669358 hm5C_site_14813 DeepMRMD:1;iRNA_m5C:0.999536396669358 14814 chr17 81042978 81042978 1 + C T rs62074705 81042993 + 81042973 81043013 41 CTTCACGGACTCCTCGGGGGCCAATATTTATTTGGAAAAAA CTTCATGGACTCCTCGGGGGCCAATATTTATTTGGAAAAAA < 41bp 1 0.042452403237091 1 0.0775199830532074 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METRNL ENSG00000176845 CDS Human protein_coding chr17:81042993 chr17:81042978 nonsynonymous SNV 0.951 0 6 hm5C_associated_SNPs_12846 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14814 DeepMRMD:1;iRNA_m5C:0.999536712157815 14815 chr17 81052407 81052407 1 + G A rs1133217 81052422 + 81052402 81052442 41 GGGCCGCGCGCTGGGAGCCGCGTGCCCTGGGCCCAGGCCTG GGGCCACGCGCTGGGAGCCGCGTGCCCTGGGCCCAGGCCTG < 41bp 1 0.609393857626853 1 0.681876540184021 experiment 0.781212284746293 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METRNL ENSG00000176845 UTR3 Human protein_coding chr17:81052422 chr17:81052407 . . 0 6 hm5C_associated_SNPs_12847 0 0 0 0 0 Ribosome 1 0.500231643921092 0.636246919631958 0.999536712157815 hm5C_site_14815 DeepMRMD:0.636246919631958;iRNA_m5C:0.999536712157815 14816 chr17 81052423 81052423 1 + G A rs8269 81052422 + 81052402 81052442 41 GGGCCGCGCGCTGGGAGCCGCGTGCCCTGGGCCCAGGCCTG GGGCCGCGCGCTGGGAGCCGCATGCCCTGGGCCCAGGCCTG < 41bp 1 0.579757299588827 1 0.557981252670288 experiment 0.840485400822346 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METRNL ENSG00000176845 UTR3 Human protein_coding chr17:81052422 chr17:81052423 . . 0 22 hm5C_associated_SNPs_12848 0 0 1 0 0 Ribosome 1 0.500231643921098 0.884037494659424 0.999536712157805 hm5C_site_14816 DeepMRMD:0.884037494659424;iRNA_m5C:0.999536712157805 14817 chr18 633346 633346 1 + G A rs114382609 633344 + 633324 633364 41 AAGATGTTACCTGGGCAGGACAGAGGACTGTGTGGGGAACT AAGATGTTACCTGGGCAGGACAAAGGACTGTGTGGGGAACT < 41bp 1 0.336541521992883 1 0.357373863458633 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633344 chr18:633346 nonsynonymous SNV 0.041 0 23 hm5C_associated_SNPs_12849 0 0 0 0 2 cytosol 1 0.50023164574474 1 0.99953670851052 hm5C_site_14817 DeepMRMD:1;iRNA_m5C:0.99953670851052 14818 chr18 657657 657657 1 + G C rs183205964 657664 + 657644 657684 41 CACCGCGCCACTTGGCCTGCCTCCGTCCCGCCGCGCCACTT CACCGCGCCACTTCGCCTGCCTCCGTCCCGCCGCGCCACTT < 41bp 1 0.540578635714794 1 0.240051746368408 experiment 0.918842728570413 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TYMS ENSG00000176890 UTR5 Human protein_coding chr18:657664 chr18:657657 . . 0 14 hm5C_associated_SNPs_12851 0 0 0 0 0 Ribosome 1 0.500231644275634 1 0.999536711448732 hm5C_site_14818 DeepMRMD:1;iRNA_m5C:0.999536711448732 14819 chr18 2656224 2656224 1 + C G rs139872818 2656205 + 2656185 2656225 41 GTCCGAGCTCGGGGACCGGCCTCTGCAGGTCGGGGAGCGCT GTCCGAGCTCGGGGACCGGCCTCTGCAGGTCGGGGAGCGGT < 41bp 1 0.480306826010291 1 0.770797848701477 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2656205 chr18:2656224 synonymous SNV . 0 40 hm5C_associated_SNPs_12852 1 0 1 0 1 Nucleus 1 0.500231643033302 0.458404302597046 0.999536713933397 hm5C_site_14819 DeepMRMD:0.458404302597046;iRNA_m5C:0.999536713933397 not specified not specified 14820 chr18 2667005 2667005 1 + T C rs7239096 2667024 + 2667004 2667044 41 ATGCCAGTGAAGGACAAAATCCTTTGCGTAAGTATCCCATT ACGCCAGTGAAGGACAAAATCCTTTGCGTAAGTATCCCATT < 41bp 1 0.0616845924451651 1 0.125531107187271 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2667024 chr18:2667005 synonymous SNV . 0 2 hm5C_associated_SNPs_12853 1 0 1 0 1 Nucleus 1 0.500231642248767 1 0.999536715502467 hm5C_site_14820 DeepMRMD:1;iRNA_m5C:0.999536715502467 not specified not specified 14821 chr18 3457606 3457606 1 + C T rs4468717 3457613 + 3457593 3457633 41 TAAGCCGTCATCCCCGGGATCAGTTTTGGCTCGTCCATCAG TAAGCCGTCATCCTCGGGATCAGTTTTGGCTCGTCCATCAG < 41bp 1 0.312028830287596 1 0.0570854544639587 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457613 chr18:3457606 nonsynonymous SNV 0.014 1 14 hm5C_associated_SNPs_12855 2 0 1 0 0 Cytosol 1 0.500231643921105 1 0.99953671215779 hm5C_site_14821 DeepMRMD:1;iRNA_m5C:0.99953671215779 not specified not specified 14822 chr18 3457606 3457606 1 + C T rs4468717 3457622 + 3457602 3457642 41 ATCCCCGGGATCAGTTTTGGCTCGTCCATCAGTGATCTGCC ATCCTCGGGATCAGTTTTGGCTCGTCCATCAGTGATCTGCC < 41bp 1 0.619741277990289 1 0.239834308624268 experiment 0.760517444019421 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457622 chr18:3457606 nonsynonymous SNV 0.014 1 5 hm5C_associated_SNPs_12856 2 0 1 0 0 Cytosol 1 0.50023164392135 1 0.9995367121573 hm5C_site_14822 DeepMRMD:1;iRNA_m5C:0.9995367121573 not specified not specified 14823 chr18 3457607 3457607 1 + C G rs2229333 3457613 + 3457593 3457633 41 TAAGCCGTCATCCCCGGGATCAGTTTTGGCTCGTCCATCAG TAAGCCGTCATCCCGGGGATCAGTTTTGGCTCGTCCATCAG < 41bp 1 0.316979551275135 1 0.0663745105266571 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457613 chr18:3457607 nonsynonymous SNV 0.014 4 15 hm5C_associated_SNPs_12857 0 0 1 0 0 Cytosol 1 0.500231643920984 1 0.999536712158032 hm5C_site_14823 DeepMRMD:1;iRNA_m5C:0.999536712158032 14824 chr18 3457607 3457607 1 + C G rs2229333 3457622 + 3457602 3457642 41 ATCCCCGGGATCAGTTTTGGCTCGTCCATCAGTGATCTGCC ATCCCGGGGATCAGTTTTGGCTCGTCCATCAGTGATCTGCC < 41bp 1 0.663346985089614 1 0.248039811849594 experiment 0.673306029820771 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457622 chr18:3457607 nonsynonymous SNV 0.014 4 6 hm5C_associated_SNPs_12858 0 0 1 0 0 Cytosol 1 0.500231643928309 1 0.999536712143381 hm5C_site_14824 DeepMRMD:1;iRNA_m5C:0.999536712143381 14825 chr18 3457608 3457608 1 + G A rs2229334 3457613 + 3457593 3457633 41 TAAGCCGTCATCCCCGGGATCAGTTTTGGCTCGTCCATCAG TAAGCCGTCATCCCCAGGATCAGTTTTGGCTCGTCCATCAG < 41bp 1 0.305421672571125 1 0.0299418568611145 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457613 chr18:3457608 synonymous SNV . 0 16 hm5C_associated_SNPs_12859 1 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_14825 DeepMRMD:1;iRNA_m5C:0.999536712157815 Holoprosencephaly Holoprosencephaly 14826 chr18 3457608 3457608 1 + G A rs2229334 3457622 + 3457602 3457642 41 ATCCCCGGGATCAGTTTTGGCTCGTCCATCAGTGATCTGCC ATCCCCAGGATCAGTTTTGGCTCGTCCATCAGTGATCTGCC < 41bp 1 0.654826912321309 1 0.150683224201202 experiment 0.690346175357383 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457622 chr18:3457608 synonymous SNV . 0 7 hm5C_associated_SNPs_12860 1 0 1 0 0 Cytosol 1 0.500231643921095 1 0.999536712157811 hm5C_site_14826 DeepMRMD:1;iRNA_m5C:0.999536712157811 Holoprosencephaly Holoprosencephaly 14827 chr18 8825399 8825399 1 + C T rs16954339 8825389 + 8825369 8825409 41 GGCCTTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCG GGCCTTCTCTGTCAGGAATGCCATCTGCTCTGGCCCTGGCG < 41bp 1 0.0216450908937681 1 0.143832445144653 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825389 chr18:8825399 synonymous SNV . 0 31 hm5C_associated_SNPs_12861 0 0 0 0 0 Nucleus 1 0.500230594897978 1 0.999538810204045 hm5C_site_14827 DeepMRMD:1;iRNA_m5C:0.999538810204045 14828 chr18 8825399 8825399 1 + C T rs16954339 8825390 + 8825370 8825410 41 GCCTTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCGA GCCTTCTCTGTCAGGAATGCCATCTGCTCTGGCCCTGGCGA < 41bp 1 0.0992268470592188 1 0.362379252910614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825390 chr18:8825399 synonymous SNV . 0 30 hm5C_associated_SNPs_12862 0 0 0 0 0 Nucleus 1 0.500231643936151 1 0.999536712127698 hm5C_site_14828 DeepMRMD:1;iRNA_m5C:0.999536712127698 14829 chr18 8825399 8825399 1 + C T rs16954339 8825393 + 8825373 8825413 41 TTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCGAGCT TTCTCTGTCAGGAATGCCATCTGCTCTGGCCCTGGCGAGCT < 41bp 1 0.324084241699916 1 0.226273655891418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825393 chr18:8825399 synonymous SNV . 0 27 hm5C_associated_SNPs_12863 0 0 0 0 0 Nucleus 1 0.500229097177539 1 0.999541805644922 hm5C_site_14829 DeepMRMD:1;iRNA_m5C:0.999541805644922 14830 chr18 8825409 8825409 1 + G A rs114965084 8825389 + 8825369 8825409 41 GGCCTTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCG GGCCTTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCA < 41bp 1 0.0263628003754778 1 0.152659237384796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825389 chr18:8825409 nonsynonymous SNV 0.002 0 41 hm5C_associated_SNPs_12864 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_14830 DeepMRMD:1;iRNA_m5C:0.999536712157816 14831 chr18 8825409 8825409 1 + G A rs114965084 8825390 + 8825370 8825410 41 GCCTTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCGA GCCTTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCAA < 41bp 1 0.126958511264435 1 0.301092684268951 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825390 chr18:8825409 nonsynonymous SNV 0.002 0 40 hm5C_associated_SNPs_12865 0 0 0 0 0 Nucleus 1 0.50023163799642 1 0.999536724007159 hm5C_site_14831 DeepMRMD:1;iRNA_m5C:0.999536724007159 14832 chr18 8825409 8825409 1 + G A rs114965084 8825393 + 8825373 8825413 41 TTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCGAGCT TTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCAAGCT < 41bp 1 0.231295442167762 1 0.248186200857162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825393 chr18:8825409 nonsynonymous SNV 0.002 0 37 hm5C_associated_SNPs_12866 0 0 0 0 0 Nucleus 1 0.500231643927285 1 0.99953671214543 hm5C_site_14832 DeepMRMD:1;iRNA_m5C:0.99953671214543 14833 chr18 8825479 8825479 1 + C A rs116556506 8825464 + 8825444 8825484 41 TGGGTCCCGGACGATGGGGACCCAGACTGTTCAGACCATCA TGGGTCCCGGACGATGGGGACCCAGACTGTTCAGAACATCA < 41bp 1 0.0421034828551824 1 0.13327693939209 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825464 chr18:8825479 nonsynonymous SNV 0.965 2 36 hm5C_associated_SNPs_12867 0 0 0 0 0 Nucleus 1 0.500231643930873 1 0.999536712138254 hm5C_site_14833 DeepMRMD:1;iRNA_m5C:0.999536712138254 14834 chr18 8825479 8825479 1 + C A rs116556506 8825465 + 8825445 8825485 41 GGGTCCCGGACGATGGGGACCCAGACTGTTCAGACCATCAG GGGTCCCGGACGATGGGGACCCAGACTGTTCAGAACATCAG < 41bp 1 0.260876785476219 1 0.194500774145126 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825465 chr18:8825479 nonsynonymous SNV 0.965 2 35 hm5C_associated_SNPs_12868 0 0 0 0 0 Nucleus 1 0.500231643916712 1 0.999536712166576 hm5C_site_14834 DeepMRMD:1;iRNA_m5C:0.999536712166576 14835 chr18 8825479 8825479 1 + C A rs116556506 8825466 + 8825446 8825486 41 GGTCCCGGACGATGGGGACCCAGACTGTTCAGACCATCAGT GGTCCCGGACGATGGGGACCCAGACTGTTCAGAACATCAGT < 41bp 1 0.162436146709204 1 0.498798400163651 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825466 chr18:8825479 nonsynonymous SNV 0.965 2 34 hm5C_associated_SNPs_12869 0 0 0 0 0 Nucleus 1 0.500231643921018 1 0.999536712157964 hm5C_site_14835 DeepMRMD:1;iRNA_m5C:0.999536712157964 14836 chr18 8826083 8826083 1 + G C rs3744977 8826102 + 8826082 8826122 41 CGCTCACTGAGAACGTGGCCCGGATCCTCAACAAGAAGCTG CCCTCACTGAGAACGTGGCCCGGATCCTCAACAAGAAGCTG < 41bp 1 0.108391537499842 1 0.0642624199390411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8826102 chr18:8826083 synonymous SNV . 0 2 hm5C_associated_SNPs_12870 0 0 0 0 0 Nucleus 1 0.500231643926656 1 0.999536712146687 hm5C_site_14836 DeepMRMD:1;iRNA_m5C:0.999536712146687 14837 chr18 8826103 8826103 1 + G A rs574852095 8826102 + 8826082 8826122 41 CGCTCACTGAGAACGTGGCCCGGATCCTCAACAAGAAGCTG CGCTCACTGAGAACGTGGCCCAGATCCTCAACAAGAAGCTG < 41bp 1 0.0845210915451858 1 0.0472859144210815 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8826102 chr18:8826103 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_12871 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14837 DeepMRMD:1;iRNA_m5C:0.999536712157815 14838 chr18 8830127 8830127 1 + G A rs192826756 8830135 + 8830115 8830155 41 ATTTCCCAAACCGTGTGTCCCAGTCAAGCACTGTGGGCTGC ATTTCCCAAACCATGTGTCCCAGTCAAGCACTGTGGGCTGC < 41bp 1 0.0907569921090811 1 0.255323171615601 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 intronic Human protein_coding chr18:8830135 chr18:8830127 . . 0 13 hm5C_associated_SNPs_12872 0 0 1 0 0 Nucleus 1 0.500231643920284 1 0.999536712159432 hm5C_site_14838 DeepMRMD:1;iRNA_m5C:0.999536712159432 14839 chr18 9257502 9257502 1 + G A rs562592238 9257488 + 9257468 9257508 41 TCCAGTGCATTTAGAGCCATCTAGTCAGGTTGGTGTGATCC TCCAGTGCATTTAGAGCCATCTAGTCAGGTTGGTATGATCC < 41bp 1 0.261455496129101 1 0.212298691272736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD12 ENSG00000101745 CDS Human protein_coding chr18:9257488 chr18:9257502 nonsynonymous SNV 0.997 0 35 hm5C_associated_SNPs_12873 0 0 1 0 0 Cytosol 1 0.500231643921297 1 0.999536712157405 hm5C_site_14839 DeepMRMD:1;iRNA_m5C:0.999536712157405 14840 chr18 9536968 9536968 1 + C G rs182972888 9536959 + 9536939 9536979 41 TTTGAATGATAGCTGTGATTCACCCCACCCCATTTTCTTGT TTTGAATGATAGCTGTGATTCACCCCACCGCATTTTCTTGT < 41bp 1 0.297041670830062 1 0.20442071557045 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RALBP1 ENSG00000017797 UTR3 Human protein_coding chr18:9536959 chr18:9536968 . . 0 30 hm5C_associated_SNPs_12874 0 0 1 0 0 Ribosome 1 0.5002316406573 1 0.999536718685401 hm5C_site_14840 DeepMRMD:1;iRNA_m5C:0.999536718685401 14841 chr18 9861996 9861996 1 + G A rs184082467 9862005 + 9861985 9862025 41 TTGAATATGACGTTACCTTGCAGACTAAAAGGTTGAAGGCC TTGAATATGACATTACCTTGCAGACTAAAAGGTTGAAGGCC < 41bp 1 0.379420010915728 1 0.468674927949905 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAB31 ENSG00000168461 UTR3 Human protein_coding chr18:9862005 chr18:9861996 . . 0 12 hm5C_associated_SNPs_12875 0 0 1 0 0 Cytosol 1 0.500231657278956 1 0.999536685442088 hm5C_site_14841 DeepMRMD:1;iRNA_m5C:0.999536685442088 14842 chr18 9954107 9954107 1 + A G rs200828821 9954099 + 9954079 9954119 41 ACATTCGGATAAACCTGGATCAACCTCAACTGCATCCTTCA ACATTCGGATAAACCTGGATCAACCTCAGCTGCATCCTTCA < 41bp 1 0.256590997373356 1 0.239821881055832 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VAPA ENSG00000101558 CDS Human protein_coding chr18:9954099 chr18:9954107 nonsynonymous SNV 0.893 0 29 hm5C_associated_SNPs_12876 0 0 1 0 1 Ribosome 1 0.500231643918792 1 0.999536712162415 hm5C_site_14842 DeepMRMD:1;iRNA_m5C:0.999536712162415 14843 chr18 11981742 11981742 1 + A G rs578206973 11981736 + 11981716 11981756 41 GGAGGAGTGCTTCCAGGCGGCCGTGCAGCTGGCGCTGCGGG GGAGGAGTGCTTCCAGGCGGCCGTGCGGCTGGCGCTGCGGG < 41bp 1 0.381705174186054 1 0.685281693935394 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IMPA2 ENSG00000141401 CDS Human protein_coding chr18:11981736 chr18:11981742 nonsynonymous SNV 0.914 0 27 hm5C_associated_SNPs_12877 0 0 1 0 1 Cytosol 1 0.500231643921092 0.629436612129212 0.999536712157815 hm5C_site_14843 DeepMRMD:0.629436612129212;iRNA_m5C:0.999536712157815 14844 chr18 11981742 11981742 1 + A G rs578206973 11981737 + 11981717 11981757 41 GAGGAGTGCTTCCAGGCGGCCGTGCAGCTGGCGCTGCGGGC GAGGAGTGCTTCCAGGCGGCCGTGCGGCTGGCGCTGCGGGC < 41bp 1 0.500192804751288 1 0.53234452009201 experiment 0.999614390497424 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IMPA2 ENSG00000141401 CDS Human protein_coding chr18:11981737 chr18:11981742 nonsynonymous SNV 0.914 0 26 hm5C_associated_SNPs_12878 0 0 1 0 1 Cytosol 1 0.500231643507789 0.93531095981598 0.999536712984422 hm5C_site_14844 DeepMRMD:0.93531095981598;iRNA_m5C:0.999536712984422 14845 chr18 12329239 12329239 1 + G A rs550591123 12329254 - 12329234 12329274 41 CACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATCGTTGC CACCAAGTGGGGTCGGCTGACCGTGTGGCAGGGATTGTTGC < 41bp 1 0.640629674295925 1 0.347584128379822 experiment 0.718740651408151 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFG3L2;TUBB6 ENSG00000141385;ENSG00000176014 UTR3 Human other chr18:12329254 chr18:12329239 . . 0 36 hm5C_associated_SNPs_12881 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_14845 DeepMRMD:1;iRNA_m5C:0.999536712157818 14846 chr18 12658600 12658600 1 + A G rs1062235 12658585 + 12658565 12658605 41 TTCCCTAGGCGCTGGATCGCCGAAGGTCTGGTTGAAAACTT TTCCCTAGGCGCTGGATCGCCGAAGGTCTGGTTGAGAACTT < 41bp 1 0.690575363782454 1 0.742937982082367 experiment 0.618849272435092 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMG2;SPIRE1 ENSG00000215527 CDS Human other chr18:12658585 chr18:12658600 synonymous SNV . 0 36 hm5C_associated_SNPs_12882 0 0 1 0 1 unknown 1 0.500231643932666 0.514124035835266 0.999536712134667 hm5C_site_14846 DeepMRMD:0.514124035835266;iRNA_m5C:0.999536712134667 14847 chr18 12703055 12703055 1 + C T rs144068611 12703065 + 12703045 12703085 41 TCTTGCTGCCCTCGTTCTTGCCAGGGCCGCGGTTAGTCCCT TCTTGCTGCCTTCGTTCTTGCCAGGGCCGCGGTTAGTCCCT < 41bp 1 0.679523364968569 1 0.454878896474838 experiment 0.640953270062862 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 UTR5 Human protein_coding chr18:12703065 chr18:12703055 . . 0 11 hm5C_associated_SNPs_12884 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14847 DeepMRMD:1;iRNA_m5C:0.999536712157815 14848 chr18 13056022 13056022 1 + G A rs139880560 13056028 + 13056008 13056048 41 CTTCCTCCAAAAGTGGAAATCTGTTGGAAACCAGTGAGGTA CTTCCTCCAAAAGTAGAAATCTGTTGGAAACCAGTGAGGTA < 41bp 1 0.179500197384478 1 0.238342732191086 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056028 chr18:13056022 nonsynonymous SNV 0.439 0 15 hm5C_associated_SNPs_12887 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14848 DeepMRMD:1;iRNA_m5C:0.999536712157815 14849 chr18 13056046 13056046 1 + G A rs141618343 13056028 + 13056008 13056048 41 CTTCCTCCAAAAGTGGAAATCTGTTGGAAACCAGTGAGGTA CTTCCTCCAAAAGTGGAAATCTGTTGGAAACCAGTGAGATA < 41bp 1 0.165770231444096 1 0.18908354640007 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056028 chr18:13056046 nonsynonymous SNV 0.001 0 39 hm5C_associated_SNPs_12888 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14849 DeepMRMD:1;iRNA_m5C:0.999536712157815 14850 chr18 13056666 13056666 1 + A G rs139404667 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAGCCAT < 41bp 1 0.128188474549349 1 0.209128975868225 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056666 synonymous SNV . 0 37 hm5C_associated_SNPs_12889 0 0 1 0 1 Nucleus 1 0.500231643921012 1 0.999536712157975 hm5C_site_14850 DeepMRMD:1;iRNA_m5C:0.999536712157975 14851 chr18 13056666 13056666 1 + A G rs139404667 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTCTGTTGGTACAAACTGTGGAATTGAGCCATGGGA < 41bp 1 0.324350236662257 1 0.149454295635223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056666 synonymous SNV . 0 33 hm5C_associated_SNPs_12890 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_14851 DeepMRMD:1;iRNA_m5C:0.999536712157815 14852 chr18 13057655 13057655 1 + C G rs61740922 13057639 + 13057619 13057659 41 CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCAG CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCGTCAG < 41bp 1 0.308382358144438 1 0.1302330493927 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13057639 chr18:13057655 nonsynonymous SNV 0.970 4 37 hm5C_associated_SNPs_12891 0 0 1 0 2 Nucleus 1 0.500231351481577 1 0.999537297036845 hm5C_site_14852 DeepMRMD:1;iRNA_m5C:0.999537297036845 14853 chr18 13057658 13057658 1 + A C rs141758949 13057639 + 13057619 13057659 41 CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCAG CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCCG < 41bp 1 0.298998088489206 1 0.133866518735886 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13057639 chr18:13057658 nonsynonymous SNV 0.941 4 40 hm5C_associated_SNPs_12892 0 0 1 0 2 Nucleus 1 0.500231642863148 1 0.999536714273703 hm5C_site_14853 DeepMRMD:1;iRNA_m5C:0.999536714273703 14854 chr18 13067905 13067905 1 + T C rs150357881 13067893 + 13067873 13067913 41 CTTATGGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC CTTATGGAGGCTGGAAAGCCCTCCCACTAAAACTGATAAAC < 41bp 1 0.285153016649704 1 0.375934422016144 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13067893 chr18:13067905 synonymous SNV . 0 33 hm5C_associated_SNPs_12893 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14854 DeepMRMD:1;iRNA_m5C:0.999536712157815 14855 chr18 13095654 13095654 1 + A G rs79702541 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCT < 41bp 1 0.211410962957357 1 0.232764035463333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095654 nonsynonymous SNV 0.132 0 22 hm5C_associated_SNPs_12894 0 0 1 14 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14855 DeepMRMD:1;iRNA_m5C:0.999536712157815 14856 chr18 13095654 13095654 1 + A G rs79702541 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCGAGCGCTTGATTCTGGTAGCTCCTTC < 41bp 1 0.553290076721899 1 0.236833572387695 experiment 0.893419846556202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095654 nonsynonymous SNV 0.132 0 20 hm5C_associated_SNPs_12895 0 0 1 14 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14856 DeepMRMD:1;iRNA_m5C:0.999536712157815 14857 chr18 13645313 13645313 1 + A C rs200235216 13645293 + 13645273 13645313 41 CCACCTCCTTACCAGGGGCCCTGCACCCTGCAGCTCCGGGA CCACCTCCTTACCAGGGGCCCTGCACCCTGCAGCTCCGGGC < 41bp 1 0.527583274932739 1 0.10842689871788 experiment 0.944833450134521 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLRAD4 ENSG00000168675 CDS Human protein_coding chr18:13645293 chr18:13645313 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_12896 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14857 DeepMRMD:1;iRNA_m5C:0.999536712157815 14858 chr18 13760008 13760008 1 + T C rs76766210 13760006 + 13759986 13760026 41 GGCAGTAGTCCCAGAGGGGCCGTGTTCTGTCCTGCACAAAT GGCAGTAGTCCCAGAGGGGCCGCGTTCTGTCCTGCACAAAT < 41bp 1 0.643092052349602 1 0.673160791397095 experiment 0.713815895300795 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNMT ENSG00000101654 UTR3 Human protein_coding chr18:13760006 chr18:13760008 . . 0 23 hm5C_associated_SNPs_12897 0 0 1 0 1 Nucleus 1 0.500231619549461 0.65367841720581 0.999536760901078 hm5C_site_14858 DeepMRMD:0.65367841720581;iRNA_m5C:0.999536760901078 14859 chr18 19444661 19444661 1 + A C rs76056004 19444676 + 19444656 19444696 41 AATGTATCTAGTCATGAGATCTTAATAGGCTTTTGATCTAG AATGTCTCTAGTCATGAGATCTTAATAGGCTTTTGATCTAG < 41bp 1 0.162479627739885 1 0.293376445770264 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIB1 ENSG00000101752 UTR3 Human protein_coding chr18:19444676 chr18:19444661 . . 0 6 hm5C_associated_SNPs_12899 0 0 1 0 0 Nucleus 1 0.500231643921089 1 0.999536712157822 hm5C_site_14859 DeepMRMD:1;iRNA_m5C:0.999536712157822 14860 chr18 19751638 19751638 1 + C T rs387906815 19751626 + 19751606 19751646 41 CGGCTTCGTGCACTCTGCGGCCGCGGCGGCAGCAGCCGCGG CGGCTTCGTGCACTCTGCGGCCGCGGCGGCAGTAGCCGCGG < 41bp 1 0.543884787619276 1 0.471789300441742 experiment 0.912230424761448 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GATA6 ENSG00000141448 CDS Human protein_coding chr18:19751626 chr18:19751638 nonsynonymous SNV 0.653 4 33 hm5C_associated_SNPs_12900 1 0 0 0 0 Cytosol 1 0.500231682410032 1 0.999536635179937 hm5C_site_14860 DeepMRMD:1;iRNA_m5C:0.999536635179937 Atrioventricular septal defect 5 Atrioventricular septal defect 5 14861 chr18 20513338 20513338 1 + G A rs7244973 20513350 + 20513330 20513370 41 CCGCCTCCGAGCCCGGCCGGCAGCCCCCGGCCTTAAAGCGC CCGCCTCCAAGCCCGGCCGGCAGCCCCCGGCCTTAAAGCGC < 41bp 1 0.462830607050694 1 0.22686043381691 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MIR4741 ENSG00000264817 ncRNA_exonic Human other chr18:20513350 chr18:20513338 . . 0 9 hm5C_associated_SNPs_12901 2 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_14861 DeepMRMD:1;iRNA_m5C:0.999536712157815 Seckel syndrome Seckel syndrome 14862 chr18 20513383 20513383 1 + G A rs530533933 20513370 + 20513350 20513390 41 CAGCCCCCGGCCTTAAAGCGCGGGCTGTCCGGAGGGGTCGG CAGCCCCCGGCCTTAAAGCGCGGGCTGTCCGGAAGGGTCGG < 41bp 1 0.697712045313299 1 0.695440411567688 experiment 0.604575909373401 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control MIR4741 ENSG00000264817 ncRNA_exonic Human other chr18:20513370 chr18:20513383 . . 0 34 hm5C_associated_SNPs_12905 0 0 1 0 0 unknown 1 0.50023164392103 0.609119176864624 0.99953671215794 hm5C_site_14862 DeepMRMD:0.609119176864624;iRNA_m5C:0.99953671215794 14863 chr18 20573434 20573434 1 + T C rs34780140 20573447 + 20573427 20573467 41 CCAAAGATTCCCCAGGGGAGCCCTGTTCACAGGAATGCATC CCAAAGACTCCCCAGGGGAGCCCTGTTCACAGGAATGCATC < 41bp 1 0.171082155211096 1 0.0348386764526367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20573447 chr18:20573434 synonymous SNV . 0 8 hm5C_associated_SNPs_12906 3 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_14863 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 14864 chr18 20716258 20716258 1 + G A rs200098768 20716245 + 20716225 20716265 41 GCGAGTCCCCTGGGCGCCGGCCGGGCGTCGGGGGAGCAGTG GCGAGTCCCCTGGGCGCCGGCCGGGCGTCGGGGAAGCAGTG < 41bp 1 0.63937121790703 1 0.817288935184479 experiment 0.72125756418594 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABLES1 ENSG00000134508 CDS Human protein_coding chr18:20716245 chr18:20716258 nonsynonymous SNV 0.027 1 34 hm5C_associated_SNPs_12907 0 0 0 0 0 chromatin 1 0.500231643925177 0.365422129631042 0.999536712149647 hm5C_site_14864 DeepMRMD:0.365422129631042;iRNA_m5C:0.999536712149647 14865 chr18 20837568 20837568 1 + A G rs547255499 20837574 + 20837554 20837594 41 TGTGCTGAGAACAGAGAGGCCCTGCCCTCTGTCCACTAGCG TGTGCTGAGAACAGGGAGGCCCTGCCCTCTGTCCACTAGCG < 41bp 1 0.0768871848290845 1 0.0602234899997711 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CABLES1 ENSG00000266495 ncRNA_intronic Human antisense chr18:20837574 chr18:20837568 . . 0 15 hm5C_associated_SNPs_12908 0 0 1 0 0 chromatin 1 0.500231643921316 1 0.999536712157369 hm5C_site_14865 DeepMRMD:1;iRNA_m5C:0.999536712157369 14866 chr18 20837591 20837591 1 + A G rs567234377 20837574 + 20837554 20837594 41 TGTGCTGAGAACAGAGAGGCCCTGCCCTCTGTCCACTAGCG TGTGCTGAGAACAGAGAGGCCCTGCCCTCTGTCCACTGGCG < 41bp 1 0.0771441403246219 1 0.0555185377597809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CABLES1 ENSG00000266495 ncRNA_intronic Human antisense chr18:20837574 chr18:20837591 . . 0 38 hm5C_associated_SNPs_12909 0 0 1 0 0 chromatin 1 0.500231643816283 1 0.999536712367434 hm5C_site_14866 DeepMRMD:1;iRNA_m5C:0.999536712367434 14867 chr18 21508192 21508192 1 + G A rs146634036 21508180 + 21508160 21508200 41 AATGATACTGTGGGAGTAACCAAAAAGTGCTCGGAAGACTG AATGATACTGTGGGAGTAACCAAAAAGTGCTCAGAAGACTG < 41bp 1 0.42401681514297 1 0.743930816650391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21508180 chr18:21508192 synonymous SNV . 0 33 hm5C_associated_SNPs_12910 2 0 1 0 1 Cytosol 1 0.500231643935806 0.512138366699218 0.999536712128389 hm5C_site_14867 DeepMRMD:0.512138366699218;iRNA_m5C:0.999536712128389 Epidermolysis bullosa, junctional Epidermolysis bullosa, junctional 14868 chr18 21594977 21594977 1 + T A rs548200876 21594978 + 21594958 21594998 41 CAACAACGGCTTCAGGGAGTCGGACCAGCTTTTCAAACAAT CAACAACGGCTTCAGGGAGACGGACCAGCTTTTCAAACAAT < 41bp 1 0.227344201557504 1 0.472558230161667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control TTC39C ENSG00000168234 CDS Human protein_coding chr18:21594978 chr18:21594977 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_12911 0 0 1 4 1 Nucleus 1 0.500231643921087 1 0.999536712157826 hm5C_site_14868 DeepMRMD:1;iRNA_m5C:0.999536712157826 14869 chr18 29056785 29056785 1 + A G rs113791745 29056805 + 29056785 29056825 41 AGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG GGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG < 41bp 1 0.482766982864593 1 0.504285335540771 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG3 ENSG00000134757 UTR3 Human protein_coding chr18:29056805 chr18:29056785 . . 0 1 hm5C_associated_SNPs_12912 0 0 0 0 0 Nucleus 1 0.500231652925454 0.991429328918458 0.999536694149091 hm5C_site_14869 DeepMRMD:0.991429328918458;iRNA_m5C:0.999536694149091 14870 chr18 29672035 29672035 1 + G A rs187700507 29672027 + 29672007 29672047 41 ACCATGAGCCTCGGCTCCGGCCCCGTTAGGGGCCGATAAGC ACCATGAGCCTCGGCTCCGGCCCCGTTAAGGGCCGATAAGC < 41bp 1 0.524647899104721 1 0.261185020208359 experiment 0.950704201790558 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF138 ENSG00000265008 ncRNA_exonic Human antisense chr18:29672027 chr18:29672035 . . 0 29 hm5C_associated_SNPs_12914 0 0 1 0 0 Cytosol 1 0.500231644507152 1 0.999536710985695 hm5C_site_14870 DeepMRMD:1;iRNA_m5C:0.999536710985695 14871 chr18 29672035 29672035 1 + G A rs187700507 29672028 + 29672008 29672048 41 CCATGAGCCTCGGCTCCGGCCCCGTTAGGGGCCGATAAGCA CCATGAGCCTCGGCTCCGGCCCCGTTAAGGGCCGATAAGCA < 41bp 1 0.419901929780888 1 0.0958119034767151 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF138 ENSG00000265008 ncRNA_exonic Human antisense chr18:29672028 chr18:29672035 . . 0 28 hm5C_associated_SNPs_12915 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14871 DeepMRMD:1;iRNA_m5C:0.999536712157815 14872 chr18 29672035 29672035 1 + G A rs187700507 29672029 + 29672009 29672049 41 CATGAGCCTCGGCTCCGGCCCCGTTAGGGGCCGATAAGCAC CATGAGCCTCGGCTCCGGCCCCGTTAAGGGCCGATAAGCAC < 41bp 1 0.346821796221736 1 0.136725127696991 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF138 ENSG00000265008 ncRNA_exonic Human antisense chr18:29672029 chr18:29672035 . . 0 27 hm5C_associated_SNPs_12916 0 0 1 0 0 Cytosol 1 0.500231644822639 1 0.999536710354721 hm5C_site_14872 DeepMRMD:1;iRNA_m5C:0.999536710354721 14873 chr18 29672035 29672035 1 + G A rs187700507 29672030 + 29672010 29672050 41 ATGAGCCTCGGCTCCGGCCCCGTTAGGGGCCGATAAGCACA ATGAGCCTCGGCTCCGGCCCCGTTAAGGGCCGATAAGCACA < 41bp 1 0.542695705298689 1 0.256469041109085 experiment 0.914608589402623 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF138 ENSG00000265008 ncRNA_exonic Human antisense chr18:29672030 chr18:29672035 . . 0 26 hm5C_associated_SNPs_12917 0 0 1 0 0 Cytosol 1 0.500231643921083 1 0.999536712157833 hm5C_site_14873 DeepMRMD:1;iRNA_m5C:0.999536712157833 14874 chr18 29672035 29672035 1 + G A rs187700507 29672039 + 29672019 29672059 41 GGCTCCGGCCCCGTTAGGGGCCGATAAGCACAGCGCACGCC GGCTCCGGCCCCGTTAAGGGCCGATAAGCACAGCGCACGCC < 41bp 1 0.485226389118575 1 0.103869557380676 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF138 ENSG00000265008 ncRNA_exonic Human antisense chr18:29672039 chr18:29672035 . . 0 17 hm5C_associated_SNPs_12918 0 0 1 0 0 Cytosol 1 0.500231643905279 1 0.999536712189443 hm5C_site_14874 DeepMRMD:1;iRNA_m5C:0.999536712189443 14875 chr18 33709875 33709875 1 + G C rs114190281 33709886 + 33709866 33709906 41 CTCTTGTTTGTGCGGCTGACCAGTTGGCGACATGGTGGCAC CTCTTGTTTCTGCGGCTGACCAGTTGGCGACATGGTGGCAC < 41bp 1 0.523204252291106 1 0.672416746616364 experiment 0.953591495417788 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ELP2 ENSG00000134759 UTR5 Human protein_coding chr18:33709886 chr18:33709875 . . 0 10 hm5C_associated_SNPs_12920 0 0 1 0 0 Nucleus 1 0.500230830342863 0.655166506767272 0.999538339314275 hm5C_site_14875 DeepMRMD:0.655166506767272;iRNA_m5C:0.999538339314275 14876 chr18 33780013 33780013 1 + C A rs77632154 33780019 + 33779999 33780039 41 AGGTCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGG AGGTCAAGTCTGGGAGGTTGCACCCTGTGAGCACGCCTGGG < 41bp 1 0.660144960907937 1 0.148893147706985 experiment 0.679710078184127 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780019 chr18:33780013 synonymous SNV . 0 15 hm5C_associated_SNPs_12921 0 0 1 0 0 Ribosome 1 0.500231640099139 1 0.999536719801722 hm5C_site_14876 DeepMRMD:1;iRNA_m5C:0.999536719801722 14877 chr18 33780013 33780013 1 + C A rs77632154 33780021 + 33780001 33780041 41 GTCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAA GTCAAGTCTGGGAGGTTGCACCCTGTGAGCACGCCTGGGAA < 41bp 1 0.376554826427711 1 0.115651905536652 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780021 chr18:33780013 synonymous SNV . 0 13 hm5C_associated_SNPs_12922 0 0 1 0 0 Ribosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_14877 DeepMRMD:1;iRNA_m5C:0.999536712157806 14878 chr18 33780013 33780013 1 + C A rs77632154 33780022 + 33780002 33780042 41 TCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAAG TCAAGTCTGGGAGGTTGCACCCTGTGAGCACGCCTGGGAAG < 41bp 1 0.386438698757602 1 0.403189480304718 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780022 chr18:33780013 synonymous SNV . 0 12 hm5C_associated_SNPs_12923 0 0 1 0 0 Ribosome 1 0.500231643922718 1 0.999536712154564 hm5C_site_14878 DeepMRMD:1;iRNA_m5C:0.999536712154564 14879 chr18 33780013 33780013 1 + C A rs77632154 33780023 + 33780003 33780043 41 CAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAAGT CAAGTCTGGGAGGTTGCACCCTGTGAGCACGCCTGGGAAGT < 41bp 1 0.599428944017919 1 0.188956290483475 experiment 0.801142111964162 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780023 chr18:33780013 synonymous SNV . 0 11 hm5C_associated_SNPs_12924 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_14879 DeepMRMD:1;iRNA_m5C:0.999536712157814 14880 chr18 33780020 33780020 1 + A G rs623558 33780021 + 33780001 33780041 41 GTCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAA GTCAAGTCTGGGCGGTTGCGCCCTGTGAGCACGCCTGGGAA < 41bp 1 0.382766035065133 1 0.0651061832904816 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780021 chr18:33780020 nonsynonymous SNV 0.000 1 20 hm5C_associated_SNPs_12926 0 0 1 0 0 Ribosome 1 0.500231629605966 1 0.999536740788068 hm5C_site_14880 DeepMRMD:1;iRNA_m5C:0.999536740788068 14881 chr18 33780020 33780020 1 + A G rs623558 33780022 + 33780002 33780042 41 TCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAAG TCAAGTCTGGGCGGTTGCGCCCTGTGAGCACGCCTGGGAAG < 41bp 1 0.355364653001983 1 0.140163421630859 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780022 chr18:33780020 nonsynonymous SNV 0.000 1 19 hm5C_associated_SNPs_12927 0 0 1 0 0 Ribosome 1 0.500231643912386 1 0.999536712175227 hm5C_site_14881 DeepMRMD:1;iRNA_m5C:0.999536712175227 14882 chr18 33780020 33780020 1 + A G rs623558 33780023 + 33780003 33780043 41 CAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAAGT CAAGTCTGGGCGGTTGCGCCCTGTGAGCACGCCTGGGAAGT < 41bp 1 0.505352684037767 1 0.0533977150917053 experiment 0.989294631924466 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780023 chr18:33780020 nonsynonymous SNV 0.000 1 18 hm5C_associated_SNPs_12928 0 0 1 0 0 Ribosome 1 0.500231622616926 1 0.999536754766147 hm5C_site_14882 DeepMRMD:1;iRNA_m5C:0.999536754766147 14883 chr18 33785185 33785185 1 + A G rs667667 33785182 + 33785162 33785202 41 AGCAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGT AGCAGCCCTGAGGTTCAGGGCCCGATCATCAATTTTAATGT < 41bp 1 0.446507673936352 1 0.0693609714508057 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785182 chr18:33785185 synonymous SNV . 0 24 hm5C_associated_SNPs_12929 0 0 0 0 1 Ribosome 1 0.500231643877271 1 0.999536712245459 hm5C_site_14883 DeepMRMD:1;iRNA_m5C:0.999536712245459 14884 chr18 33785185 33785185 1 + A G rs667667 33785183 + 33785163 33785203 41 GCAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTG GCAGCCCTGAGGTTCAGGGCCCGATCATCAATTTTAATGTG < 41bp 1 0.0911398415242262 1 0.0188717246055603 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785183 chr18:33785185 synonymous SNV . 0 23 hm5C_associated_SNPs_12930 0 0 0 0 1 Ribosome 1 0.500231643921118 1 0.999536712157764 hm5C_site_14884 DeepMRMD:1;iRNA_m5C:0.999536712157764 14885 chr18 33785185 33785185 1 + A G rs667667 33785184 + 33785164 33785204 41 CAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTGC CAGCCCTGAGGTTCAGGGCCCGATCATCAATTTTAATGTGC < 41bp 1 0.0466134608544048 1 0.0270122289657593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785184 chr18:33785185 synonymous SNV . 0 22 hm5C_associated_SNPs_12931 0 0 0 0 1 Ribosome 1 0.500231643795455 1 0.999536712409089 hm5C_site_14885 DeepMRMD:1;iRNA_m5C:0.999536712409089 14886 chr18 34289081 34289081 1 + G A rs139884505 34289065 + 34289045 34289085 41 TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCGAATC TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCAAATC < 41bp 1 0.577981241104862 1 0.825187921524048 experiment 0.844037517790276 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289065 chr18:34289081 nonsynonymous SNV 0.099 0 37 hm5C_associated_SNPs_12932 0 0 0 0 1 exosome 1 0.500231643933344 0.349624156951904 0.999536712133313 hm5C_site_14886 DeepMRMD:0.349624156951904;iRNA_m5C:0.999536712133313 14887 chr18 34349252 34349252 1 + G A rs145954630 34349255 + 34349235 34349275 41 TAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCA TAGTTCCTGGACTATGGAAACTGATGACTCGCCCAATGTCA < 41bp 1 0.194524662995542 1 0.169064372777939 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34349255 chr18:34349252 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_12934 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_14887 DeepMRMD:1;iRNA_m5C:0.999536712157815 14888 chr18 34349264 34349264 1 + C G rs187008252 34349255 + 34349235 34349275 41 TAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCA TAGTTCCTGGACTATGGGAACTGATGACTGGCCCAATGTCA < 41bp 1 0.125332336336963 1 0.152856141328812 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34349255 chr18:34349264 nonsynonymous SNV 0.993 3 30 hm5C_associated_SNPs_12935 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14888 DeepMRMD:1;iRNA_m5C:0.999536712157815 14889 chr18 46284659 46284659 1 + G A rs137937120 46284660 + 46284640 46284680 41 CCCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGT CCCCACAGCAGTCAGGGGGACCAGAGGTTGAGACAAAACGT < 41bp 1 0.277647564763907 1 0.443201571702957 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284660 chr18:46284659 synonymous SNV . 0 20 hm5C_associated_SNPs_12937 0 0 0 0 0 Cytosol 1 0.500231644373028 1 0.999536711253944 hm5C_site_14889 DeepMRMD:1;iRNA_m5C:0.999536711253944 14890 chr18 46284659 46284659 1 + G A rs137937120 46284661 + 46284641 46284681 41 CCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGTA CCCACAGCAGTCAGGGGGACCAGAGGTTGAGACAAAACGTA < 41bp 1 0.386875738908994 1 0.598842740058899 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284661 chr18:46284659 synonymous SNV . 0 19 hm5C_associated_SNPs_12938 0 0 0 0 0 Cytosol 1 0.500232041825055 0.802314519882202 0.99953591634989 hm5C_site_14890 DeepMRMD:0.802314519882202;iRNA_m5C:0.99953591634989 14891 chr18 46284715 46284715 1 + G A rs190509322 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCAG < 41bp 1 0.500561249647716 1 0.111291199922562 experiment 0.998877500704567 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284715 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_12939 0 0 0 0 2 Cytosol 1 0.500231643928337 1 0.999536712143325 hm5C_site_14891 DeepMRMD:1;iRNA_m5C:0.999536712143325 14892 chr18 46386865 46386865 1 + T C rs555225138 46386852 + 46386832 46386872 41 CCCCGCTGGAATCCTGTGTTCCTCGCCACTGGCTTCCAGCG CCCCGCTGGAATCCTGTGTTCCTCGCCACTGGCCTCCAGCG < 41bp 1 0.103360839804412 1 0.0141596794128418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTIF ENSG00000134030 UTR3 Human protein_coding chr18:46386852 chr18:46386865 . . 0 34 hm5C_associated_SNPs_12940 0 0 1 0 0 Cytosol 1 0.500231651193084 1 0.999536697613833 hm5C_site_14892 DeepMRMD:1;iRNA_m5C:0.999536697613833 14893 chr18 47919224 47919224 1 + T C rs9952721 47919209 + 47919189 47919229 41 TCCCAGGTTCACGCCATCCTCCTGCCTCAGCCTCCTGAGTA TCCCAGGTTCACGCCATCCTCCTGCCTCAGCCTCCCGAGTA < 41bp 1 0.439418238043956 1 0.220265120267868 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47919209 chr18:47919224 . . 0 36 hm5C_associated_SNPs_12941 0 0 0 0 0 Cytosol 1 0.500231645685135 1 0.999536708629731 hm5C_site_14893 DeepMRMD:1;iRNA_m5C:0.999536708629731 14894 chr18 47919224 47919224 1 + T C rs9952721 47919210 + 47919190 47919230 41 CCCAGGTTCACGCCATCCTCCTGCCTCAGCCTCCTGAGTAG CCCAGGTTCACGCCATCCTCCTGCCTCAGCCTCCCGAGTAG < 41bp 1 0.645797214675284 1 0.197865217924118 experiment 0.708405570649431 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47919210 chr18:47919224 . . 0 35 hm5C_associated_SNPs_12942 0 0 0 0 0 Cytosol 1 0.500231643921512 1 0.999536712156976 hm5C_site_14894 DeepMRMD:1;iRNA_m5C:0.999536712156976 14895 chr18 47919224 47919224 1 + T C rs9952721 47919213 + 47919193 47919233 41 AGGTTCACGCCATCCTCCTGCCTCAGCCTCCTGAGTAGCTG AGGTTCACGCCATCCTCCTGCCTCAGCCTCCCGAGTAGCTG < 41bp 1 0.339199808342274 1 0.0686308741569519 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47919213 chr18:47919224 . . 0 32 hm5C_associated_SNPs_12943 0 0 0 0 0 Cytosol 1 0.500231643921153 1 0.999536712157694 hm5C_site_14895 DeepMRMD:1;iRNA_m5C:0.999536712157694 14896 chr18 47919224 47919224 1 + T C rs9952721 47919214 + 47919194 47919234 41 GGTTCACGCCATCCTCCTGCCTCAGCCTCCTGAGTAGCTGG GGTTCACGCCATCCTCCTGCCTCAGCCTCCCGAGTAGCTGG < 41bp 1 0.698429021155428 1 0.337187469005585 experiment 0.603141957689145 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47919214 chr18:47919224 . . 0 31 hm5C_associated_SNPs_12944 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_14896 DeepMRMD:1;iRNA_m5C:0.999536712157815 14897 chr18 47919224 47919224 1 + T C rs9952721 47919216 + 47919196 47919236 41 TTCACGCCATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGA TTCACGCCATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGA < 41bp 1 0.61810093947751 1 0.588894188404083 experiment 0.76379812104498 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47919216 chr18:47919224 . . 0 29 hm5C_associated_SNPs_12945 0 0 0 0 0 Cytosol 1 0.500231643921092 0.822211623191834 0.999536712157815 hm5C_site_14897 DeepMRMD:0.822211623191834;iRNA_m5C:0.999536712157815 14898 chr18 47919224 47919224 1 + T C rs9952721 47919219 + 47919199 47919239 41 ACGCCATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTA ACGCCATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTA < 41bp 1 0.130244345926744 1 0.191281110048294 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47919219 chr18:47919224 . . 0 26 hm5C_associated_SNPs_12946 0 0 0 0 0 Cytosol 1 0.50023164392122 1 0.99953671215756 hm5C_site_14898 DeepMRMD:1;iRNA_m5C:0.99953671215756 14899 chr18 47919224 47919224 1 + T C rs9952721 47919220 + 47919200 47919240 41 CGCCATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAC CGCCATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTAC < 41bp 1 0.487757361425816 1 0.24454140663147 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47919220 chr18:47919224 . . 0 25 hm5C_associated_SNPs_12947 0 0 0 0 0 Cytosol 1 0.500231643920411 1 0.999536712159178 hm5C_site_14899 DeepMRMD:1;iRNA_m5C:0.999536712159178 14900 chr18 47919224 47919224 1 + T C rs9952721 47919223 + 47919203 47919243 41 CATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGG CATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGG < 41bp 1 0.444867922223535 1 0.491953730583191 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47919223 chr18:47919224 . . 0 22 hm5C_associated_SNPs_12948 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14900 DeepMRMD:1;iRNA_m5C:0.999536712157815 14901 chr18 47919224 47919224 1 + T C rs9952721 47919244 + 47919224 47919264 41 TGAGTAGCTGGGACTACAGGCACCTGCCACCACGCCCAGCT CGAGTAGCTGGGACTACAGGCACCTGCCACCACGCCCAGCT < 41bp 1 0.530823341271809 1 0.204993069171906 experiment 0.938353317456381 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47919244 chr18:47919224 . . 0 1 hm5C_associated_SNPs_12949 0 0 0 0 0 Cytosol 1 0.500231919076775 1 0.999536161846451 hm5C_site_14901 DeepMRMD:1;iRNA_m5C:0.999536161846451 14902 chr18 47919261 47919261 1 + A T rs573179406 47919244 + 47919224 47919264 41 TGAGTAGCTGGGACTACAGGCACCTGCCACCACGCCCAGCT TGAGTAGCTGGGACTACAGGCACCTGCCACCACGCCCTGCT < 41bp 1 0.502598830234396 1 0.289894342422485 experiment 0.994802339531209 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SKA1 ENSG00000154839 UTR3 Human protein_coding chr18:47919244 chr18:47919261 . . 0 38 hm5C_associated_SNPs_12950 0 0 0 0 0 Cytosol 1 0.500231729222584 1 0.999536541554832 hm5C_site_14902 DeepMRMD:1;iRNA_m5C:0.999536541554832 14903 chr18 48581278 48581278 1 + A G rs145805120 48581284 + 48581264 48581304 41 GCATCGACAGAGACATACAGCACCCCAGCTCTGTTAGCCCC GCATCGACAGAGACGTACAGCACCCCAGCTCTGTTAGCCCC < 41bp 1 0.348553114620677 1 0.217484474182129 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48581284 chr18:48581278 synonymous SNV . 0 15 hm5C_associated_SNPs_12951 2 0 1 0 1 Cytosol 1 0.500231643921085 1 0.999536712157829 hm5C_site_14903 DeepMRMD:1;iRNA_m5C:0.999536712157829 not specified not specified 14904 chr18 54694452 54694452 1 + C T rs3745033 54694463 + 54694443 54694483 41 GCTGCCTGCCGCCGTGACTGCGTTTTAGTTCTCTAAATTAT GCTGCCTGCTGCCGTGACTGCGTTTTAGTTCTCTAAATTAT < 41bp 1 0.0879760957781918 1 0.136389046907425 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR7 ENSG00000091157 UTR3 Human protein_coding chr18:54694463 chr18:54694452 . . 0 10 hm5C_associated_SNPs_12952 0 0 0 0 0 chromatin 1 0.500231642287151 1 0.999536715425699 hm5C_site_14904 DeepMRMD:1;iRNA_m5C:0.999536715425699 14905 chr18 54694456 54694456 1 + G A rs77321591 54694463 + 54694443 54694483 41 GCTGCCTGCCGCCGTGACTGCGTTTTAGTTCTCTAAATTAT GCTGCCTGCCGCCATGACTGCGTTTTAGTTCTCTAAATTAT < 41bp 1 0.067194295739767 1 0.101187437772751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR7 ENSG00000091157 UTR3 Human protein_coding chr18:54694463 chr18:54694456 . . 0 14 hm5C_associated_SNPs_12953 0 0 0 2 0 chromatin 1 0.50023164392119 1 0.999536712157619 hm5C_site_14905 DeepMRMD:1;iRNA_m5C:0.999536712157619 14906 chr18 55996244 55996244 1 + C G rs202231187 55996248 + 55996228 55996268 41 GACGTGTCCTCGGAGTCGGACAATAACATCAGACAGATCAA GACGTGTCCTCGGAGTGGGACAATAACATCAGACAGATCAA < 41bp 1 0.269664525881882 1 0.309290558099747 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:55996248 chr18:55996244 nonsynonymous SNV 0.743 4 17 hm5C_associated_SNPs_12956 0 0 1 0 1 Cytosol 1 0.500231761570481 1 0.999536476859037 hm5C_site_14906 DeepMRMD:1;iRNA_m5C:0.999536476859037 14907 chr18 57570333 57570333 1 + G A rs1041978 57570340 + 57570320 57570360 41 CCTACTGTGAAGGGAGATGACCTGTGATTAGACTGGGCGGC CCTACTGTGAAGGAAGATGACCTGTGATTAGACTGGGCGGC < 41bp 1 0.539394122948037 1 0.119368046522141 experiment 0.921211754103926 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PMAIP1 ENSG00000141682 UTR3 Human protein_coding chr18:57570340 chr18:57570333 . . 0 14 hm5C_associated_SNPs_12957 0 0 1 0 0 Cytosol 1 0.500231643921056 1 0.999536712157889 hm5C_site_14907 DeepMRMD:1;iRNA_m5C:0.999536712157889 14908 chr18 57570333 57570333 1 + G A rs1041978 57570341 + 57570321 57570361 41 CTACTGTGAAGGGAGATGACCTGTGATTAGACTGGGCGGCT CTACTGTGAAGGAAGATGACCTGTGATTAGACTGGGCGGCT < 41bp 1 0.674296797982144 1 0.266973257064819 experiment 0.651406404035711 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PMAIP1 ENSG00000141682 UTR3 Human protein_coding chr18:57570341 chr18:57570333 . . 0 13 hm5C_associated_SNPs_12958 0 0 1 0 0 Cytosol 1 0.500231630015041 1 0.999536739969918 hm5C_site_14908 DeepMRMD:1;iRNA_m5C:0.999536739969918 14909 chr18 57570342 57570342 1 + T C rs1942918 57570341 + 57570321 57570361 41 CTACTGTGAAGGGAGATGACCTGTGATTAGACTGGGCGGCT CTACTGTGAAGGGAGATGACCCGTGATTAGACTGGGCGGCT < 41bp 1 0.535807625586397 1 0.299886763095856 experiment 0.928384748827205 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PMAIP1 ENSG00000141682 UTR3 Human protein_coding chr18:57570341 chr18:57570342 . . 0 22 hm5C_associated_SNPs_12959 0 0 1 0 0 Cytosol 1 0.500231643931219 1 0.999536712137561 hm5C_site_14909 DeepMRMD:1;iRNA_m5C:0.999536712137561 14910 chr18 57570622 57570622 1 + G A rs7240310 57570621 + 57570601 57570641 41 TTCAATGTGTTCCTGTTGGGCGTTACTAGAAACTATGGAAA TTCAATGTGTTCCTGTTGGGCATTACTAGAAACTATGGAAA < 41bp 1 0.349875897560346 1 0.0952201783657074 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMAIP1 ENSG00000141682 UTR3 Human protein_coding chr18:57570621 chr18:57570622 . . 0 22 hm5C_associated_SNPs_12961 0 0 1 0 0 Cytosol 1 0.500231643864177 1 0.999536712271647 hm5C_site_14910 DeepMRMD:1;iRNA_m5C:0.999536712271647 14911 chr18 60383777 60383777 1 + G T rs540790768 60383797 + 60383777 60383817 41 GCCGGGTGCCTTCGGGGGGCCTCCGCGCGCGCCCCCCGCCG TCCGGGTGCCTTCGGGGGGCCTCCGCGCGCGCCCCCCGCCG < 41bp 1 0.696145679858982 1 0.491084694862366 experiment 0.607708640282036 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60383797 chr18:60383777 synonymous SNV . 0 1 hm5C_associated_SNPs_12962 0 0 0 0 0 Cytosol 1 0.500231667597649 1 0.999536664804702 hm5C_site_14911 DeepMRMD:1;iRNA_m5C:0.999536664804702 14912 chr18 72167184 72167184 1 + C A rs191869036 72167174 + 72167154 72167194 41 GTTGCTCTTCCTTCCAAGAACCTTCGAGATCTGCGGTCTGG GTTGCTCTTCCTTCCAAGAACCTTCGAGATATGCGGTCTGG < 41bp 1 0.0947659958546884 1 0.0595845878124237 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNDP2 ENSG00000133313 UTR5 Human protein_coding chr18:72167174 chr18:72167184 . . 0 31 hm5C_associated_SNPs_12965 0 0 1 0 3 Ribosome 1 0.50023164391146 1 0.99953671217708 hm5C_site_14912 DeepMRMD:1;iRNA_m5C:0.99953671217708 14913 chr18 74625769 74625769 1 + C T rs184404327 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGCGGTCGCACACTGGGGAAAAGCCCTAC < 41bp 1 0.406348927508885 1 0.113185465335846 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625769 synonymous SNV . 0 26 hm5C_associated_SNPs_12966 0 0 0 0 2 Cytosol 1 0.500231706482638 1 0.999536587034724 hm5C_site_14913 DeepMRMD:1;iRNA_m5C:0.999536587034724 14914 chr18 74639277 74639277 1 + A G rs181512072 74639258 + 74639238 74639278 41 TCCAAGCATTCTGCAGCAGACGCTACAGCAGGGCAACCTAT TCCAAGCATTCTGCAGCAGACGCTACAGCAGGGCAACCTGT < 41bp 1 0.379413592538721 1 0.230005770921707 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74639258 chr18:74639277 synonymous SNV . 0 40 hm5C_associated_SNPs_12967 0 0 1 0 1 Cytosol 1 0.500234986348635 1 0.999530027302729 hm5C_site_14914 DeepMRMD:1;iRNA_m5C:0.999530027302729 14915 chr18 77171164 77171164 1 + G A rs76525142 77171162 + 77171142 77171182 41 CTCCCCGCGGGTCAGCGTGACCGACGACTCGTGGTTGGGCA CTCCCCGCGGGTCAGCGTGACCAACGACTCGTGGTTGGGCA < 41bp 1 0.0914275331821059 1 0.102490782737732 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77171162 chr18:77171164 nonsynonymous SNV 0.872 2 23 hm5C_associated_SNPs_12968 0 0 0 0 0 Cytosol 1 0.500231646062994 1 0.999536707874013 hm5C_site_14915 DeepMRMD:1;iRNA_m5C:0.999536707874013 14916 chr18 77171171 77171171 1 + C G rs201850664 77171162 + 77171142 77171182 41 CTCCCCGCGGGTCAGCGTGACCGACGACTCGTGGTTGGGCA CTCCCCGCGGGTCAGCGTGACCGACGACTGGTGGTTGGGCA < 41bp 1 0.151499218611757 1 0.218228906393051 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77171162 chr18:77171171 nonsynonymous SNV 0.874 2 30 hm5C_associated_SNPs_12969 0 0 0 0 0 Cytosol 1 0.500231672715368 1 0.999536654569264 hm5C_site_14916 DeepMRMD:1;iRNA_m5C:0.999536654569264 14917 chr18 77728107 77728107 1 + G A rs143104176 77728106 + 77728086 77728126 41 TACTGGAAGAAATGGGAAATCGCATTGAGGACTTACAGAAG TACTGGAAGAAATGGGAAATCACATTGAGGACTTACAGAAG < 41bp 1 0.5979742852844 1 0.399438917636871 experiment 0.8040514294312 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 CDS Human protein_coding chr18:77728106 chr18:77728107 nonsynonymous SNV 0.668 1 22 hm5C_associated_SNPs_12972 0 0 1 0 1 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_14917 DeepMRMD:1;iRNA_m5C:0.999536712157806 14918 chr18 77730663 77730663 1 + T G rs113959961 77730660 + 77730640 77730680 41 AGAAATCACACGGACCAGCACCTTGATCTGGGACTTCCAGA AGAAATCACACGGACCAGCACCTGGATCTGGGACTTCCAGA < 41bp 1 0.522587060672585 1 0.0490711629390717 experiment 0.954825878654829 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 UTR3 Human protein_coding chr18:77730660 chr18:77730663 . . 0 24 hm5C_associated_SNPs_12973 0 0 1 2 0 Cytosol 1 0.500231643896242 1 0.999536712207517 hm5C_site_14918 DeepMRMD:1;iRNA_m5C:0.999536712207517 14919 chr18 77895408 77895408 1 + G A rs35954328 77895411 + 77895391 77895431 41 TGCAACGAGCTCTTTCCGTCCAACGTCTACCAGGTCCACAT TGCAACGAGCTCTTTCCATCCAACGTCTACCAGGTCCACAT < 41bp 1 0.574588658060137 1 0.49124014377594 experiment 0.850822683879726 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADNP2 ENSG00000101544 CDS Human protein_coding chr18:77895411 chr18:77895408 synonymous SNV . 0 18 hm5C_associated_SNPs_12975 0 0 1 0 0 Cytosol 1 0.500231643314319 1 0.999536713371362 hm5C_site_14919 DeepMRMD:1;iRNA_m5C:0.999536713371362 14920 chr19 541462 541462 1 + C T rs139926290 541454 + 541434 541474 41 CGCCCGACGAGGGCTCAGACCTCTTCTACGACGACTACTAC CGCCCGACGAGGGCTCAGACCTCTTCTATGACGACTACTAC < 41bp 1 0.188089810991091 1 0.155771762132645 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC34 ENSG00000099804 CDS Human protein_coding chr19:541454 chr19:541462 synonymous SNV . 0 29 hm5C_associated_SNPs_12977 0 0 1 0 0 Ribosome 1 0.500231641047544 1 0.999536717904912 hm5C_site_14920 DeepMRMD:1;iRNA_m5C:0.999536717904912 14921 chr19 579010 579010 1 + G A rs7253615 579019 + 578999 579039 41 GGATTACAGGCGTGAGCCTCCGCGCCCGGCCACCACCGCGC GGATTACAGGCATGAGCCTCCGCGCCCGGCCACCACCGCGC < 41bp 1 0.40294887073815 1 0.596122145652771 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579019 chr19:579010 . . 0 12 hm5C_associated_SNPs_12978 0 0 0 0 0 Ribosome 1 0.500231643921092 0.807755708694458 0.999536712157815 hm5C_site_14921 DeepMRMD:0.807755708694458;iRNA_m5C:0.999536712157815 14922 chr19 579010 579010 1 + G A rs7253615 579023 + 579003 579043 41 TACAGGCGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAG TACAGGCATGAGCCTCCGCGCCCGGCCACCACCGCGCCCAG < 41bp 1 0.353134941839792 1 0.314718931913376 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579023 chr19:579010 . . 0 8 hm5C_associated_SNPs_12979 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_14922 DeepMRMD:1;iRNA_m5C:0.999536712157817 14923 chr19 579010 579010 1 + G A rs7253615 579024 + 579004 579044 41 ACAGGCGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGC ACAGGCATGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGC < 41bp 1 0.178974726413122 1 0.805155396461487 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579024 chr19:579010 . . 0 7 hm5C_associated_SNPs_12980 0 0 0 0 0 Ribosome 1 0.5002316440104 0.389689207077026 0.9995367119792 hm5C_site_14923 DeepMRMD:0.389689207077026;iRNA_m5C:0.9995367119792 14924 chr19 579010 579010 1 + G A rs7253615 579025 + 579005 579045 41 CAGGCGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGCT CAGGCATGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGCT < 41bp 1 0.244621258818273 1 0.515005469322205 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579025 chr19:579010 . . 0 6 hm5C_associated_SNPs_12981 0 0 0 0 0 Ribosome 1 0.5002316439211 0.96998906135559 0.9995367121578 hm5C_site_14924 DeepMRMD:0.96998906135559;iRNA_m5C:0.9995367121578 14925 chr19 579010 579010 1 + G A rs7253615 579028 + 579008 579048 41 GCGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGCTGGC GCATGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGCTGGC < 41bp 1 0.0364355735972395 1 0.0829077064990997 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579028 chr19:579010 . . 0 3 hm5C_associated_SNPs_12982 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14925 DeepMRMD:1;iRNA_m5C:0.999536712157815 14926 chr19 579010 579010 1 + G A rs7253615 579029 + 579009 579049 41 CGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGCTGGCT CATGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGCTGGCT < 41bp 1 0.306123560932079 1 0.14520463347435 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579029 chr19:579010 . . 0 2 hm5C_associated_SNPs_12983 0 0 0 0 0 Ribosome 1 0.500231630368976 1 0.999536739262048 hm5C_site_14926 DeepMRMD:1;iRNA_m5C:0.999536739262048 14927 chr19 579022 579022 1 + G A rs374000063 579019 + 578999 579039 41 GGATTACAGGCGTGAGCCTCCGCGCCCGGCCACCACCGCGC GGATTACAGGCGTGAGCCTCCGCACCCGGCCACCACCGCGC < 41bp 1 0.235467428813799 1 0.542335987091064 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579019 chr19:579022 . . 0 24 hm5C_associated_SNPs_12984 0 0 0 0 0 Ribosome 1 0.500231643921092 0.915328025817872 0.999536712157815 hm5C_site_14927 DeepMRMD:0.915328025817872;iRNA_m5C:0.999536712157815 14928 chr19 579022 579022 1 + G A rs374000063 579023 + 579003 579043 41 TACAGGCGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAG TACAGGCGTGAGCCTCCGCACCCGGCCACCACCGCGCCCAG < 41bp 1 0.393684090161928 1 0.685208737850189 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579023 chr19:579022 . . 0 20 hm5C_associated_SNPs_12985 0 0 0 0 0 Ribosome 1 0.500231643920567 0.629582524299622 0.999536712158867 hm5C_site_14928 DeepMRMD:0.629582524299622;iRNA_m5C:0.999536712158867 14929 chr19 579022 579022 1 + G A rs374000063 579024 + 579004 579044 41 ACAGGCGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGC ACAGGCGTGAGCCTCCGCACCCGGCCACCACCGCGCCCAGC < 41bp 1 0.213574910224059 1 0.897935211658478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579024 chr19:579022 . . 0 19 hm5C_associated_SNPs_12986 0 0 0 0 0 Ribosome 1 0.500231643939587 0.204129576683044 0.999536712120827 hm5C_site_14929 DeepMRMD:0.204129576683044;iRNA_m5C:0.999536712120827 14930 chr19 579022 579022 1 + G A rs374000063 579025 + 579005 579045 41 CAGGCGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGCT CAGGCGTGAGCCTCCGCACCCGGCCACCACCGCGCCCAGCT < 41bp 1 0.303675275406578 1 0.846193194389343 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579025 chr19:579022 . . 0 18 hm5C_associated_SNPs_12987 0 0 0 0 0 Ribosome 1 0.500231643928602 0.307613611221314 0.999536712142796 hm5C_site_14930 DeepMRMD:0.307613611221314;iRNA_m5C:0.999536712142796 14931 chr19 579022 579022 1 + G A rs374000063 579028 + 579008 579048 41 GCGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGCTGGC GCGTGAGCCTCCGCACCCGGCCACCACCGCGCCCAGCTGGC < 41bp 1 0.0362453659298036 1 0.0590270757675171 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579028 chr19:579022 . . 0 15 hm5C_associated_SNPs_12988 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14931 DeepMRMD:1;iRNA_m5C:0.999536712157815 14932 chr19 579022 579022 1 + G A rs374000063 579029 + 579009 579049 41 CGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGCTGGCT CGTGAGCCTCCGCACCCGGCCACCACCGCGCCCAGCTGGCT < 41bp 1 0.277878571380115 1 0.0888753235340118 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579029 chr19:579022 . . 0 14 hm5C_associated_SNPs_12989 0 0 0 0 0 Ribosome 1 0.5002310734043 1 0.999537853191401 hm5C_site_14932 DeepMRMD:1;iRNA_m5C:0.999537853191401 14933 chr19 579035 579035 1 + C T rs2283572 579019 + 578999 579039 41 GGATTACAGGCGTGAGCCTCCGCGCCCGGCCACCACCGCGC GGATTACAGGCGTGAGCCTCCGCGCCCGGCCACCACTGCGC < 41bp 1 0.41129524131472 1 0.678064346313477 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579019 chr19:579035 . . 0 37 hm5C_associated_SNPs_12990 0 0 0 0 0 Ribosome 1 0.500231643921092 0.643871307373046 0.999536712157815 hm5C_site_14933 DeepMRMD:0.643871307373046;iRNA_m5C:0.999536712157815 14934 chr19 579035 579035 1 + C T rs2283572 579023 + 579003 579043 41 TACAGGCGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAG TACAGGCGTGAGCCTCCGCGCCCGGCCACCACTGCGCCCAG < 41bp 1 0.375410953457174 1 0.613014221191406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579023 chr19:579035 . . 0 33 hm5C_associated_SNPs_12991 0 0 0 0 0 Ribosome 1 0.500231606404392 0.773971557617188 0.999536787191215 hm5C_site_14934 DeepMRMD:0.773971557617188;iRNA_m5C:0.999536787191215 14935 chr19 579035 579035 1 + C T rs2283572 579024 + 579004 579044 41 ACAGGCGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGC ACAGGCGTGAGCCTCCGCGCCCGGCCACCACTGCGCCCAGC < 41bp 1 0.181892099781422 1 0.875192165374756 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579024 chr19:579035 . . 0 32 hm5C_associated_SNPs_12992 0 0 0 0 0 Ribosome 1 0.50023164388652 0.249615669250488 0.99953671222696 hm5C_site_14935 DeepMRMD:0.249615669250488;iRNA_m5C:0.99953671222696 14936 chr19 579035 579035 1 + C T rs2283572 579025 + 579005 579045 41 CAGGCGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGCT CAGGCGTGAGCCTCCGCGCCCGGCCACCACTGCGCCCAGCT < 41bp 1 0.201893282522009 1 0.629350066184998 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579025 chr19:579035 . . 0 31 hm5C_associated_SNPs_12993 0 0 0 0 0 Ribosome 1 0.500231648154387 0.741299867630004 0.999536703691225 hm5C_site_14936 DeepMRMD:0.741299867630004;iRNA_m5C:0.999536703691225 14937 chr19 579035 579035 1 + C T rs2283572 579028 + 579008 579048 41 GCGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGCTGGC GCGTGAGCCTCCGCGCCCGGCCACCACTGCGCCCAGCTGGC < 41bp 1 0.0336664910345926 1 0.0562808215618134 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579028 chr19:579035 . . 0 28 hm5C_associated_SNPs_12994 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14937 DeepMRMD:1;iRNA_m5C:0.999536712157815 14938 chr19 579035 579035 1 + C T rs2283572 579029 + 579009 579049 41 CGTGAGCCTCCGCGCCCGGCCACCACCGCGCCCAGCTGGCT CGTGAGCCTCCGCGCCCGGCCACCACTGCGCCCAGCTGGCT < 41bp 1 0.394799581298727 1 0.0827039480209351 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BSG ENSG00000172270 intronic Human protein_coding chr19:579029 chr19:579035 . . 0 27 hm5C_associated_SNPs_12995 0 0 0 0 0 Ribosome 1 0.500231644651104 1 0.999536710697791 hm5C_site_14938 DeepMRMD:1;iRNA_m5C:0.999536710697791 14939 chr19 579627 579627 1 + C T rs1803202 579629 + 579609 579649 41 CGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG CGTGGTGCTGAAGGAGGATGCGCTGCCCGGCCAGAAAACGG < 41bp 1 0.449953145804199 1 0.178239107131958 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579629 chr19:579627 synonymous SNV . 0 19 hm5C_associated_SNPs_12996 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_14939 DeepMRMD:1;iRNA_m5C:0.999536712157815 14940 chr19 579627 579627 1 + C T rs1803202 579636 + 579616 579656 41 CTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAA CTGAAGGAGGATGCGCTGCCCGGCCAGAAAACGGAGTTCAA < 41bp 1 0.475297960058588 1 0.644946932792664 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579636 chr19:579627 synonymous SNV . 0 12 hm5C_associated_SNPs_12997 0 0 1 0 1 Ribosome 1 0.500231643921092 0.710106134414672 0.999536712157815 hm5C_site_14940 DeepMRMD:0.710106134414672;iRNA_m5C:0.999536712157815 14941 chr19 579630 579630 1 + G A rs61729580 579629 + 579609 579649 41 CGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG CGTGGTGCTGAAGGAGGACGCACTGCCCGGCCAGAAAACGG < 41bp 1 0.406631315236524 1 0.228168070316315 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579629 chr19:579630 synonymous SNV . 0 22 hm5C_associated_SNPs_12998 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14941 DeepMRMD:1;iRNA_m5C:0.999536712157815 14942 chr19 579630 579630 1 + G A rs61729580 579636 + 579616 579656 41 CTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAA CTGAAGGAGGACGCACTGCCCGGCCAGAAAACGGAGTTCAA < 41bp 1 0.53212018261548 1 0.744309365749359 experiment 0.93575963476904 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579636 chr19:579630 synonymous SNV . 0 15 hm5C_associated_SNPs_12999 0 0 1 0 1 Ribosome 1 0.500231643921092 0.511381268501282 0.999536712157815 hm5C_site_14942 DeepMRMD:0.511381268501282;iRNA_m5C:0.999536712157815 14943 chr19 580388 580388 1 + C A rs2229664 580385 + 580365 580405 41 TGCTGTGGTTGCAGGGTGGACTCCGACGACCAGTGGGGAGA TGCTGTGGTTGCAGGGTGGACTCAGACGACCAGTGGGGAGA < 41bp 1 0.473607801111871 1 0.284375190734863 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580385 chr19:580388 synonymous SNV . 0 24 hm5C_associated_SNPs_13001 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14943 DeepMRMD:1;iRNA_m5C:0.999536712157815 14944 chr19 580388 580388 1 + C A rs2229664 580387 + 580367 580407 41 CTGTGGTTGCAGGGTGGACTCCGACGACCAGTGGGGAGAGT CTGTGGTTGCAGGGTGGACTCAGACGACCAGTGGGGAGAGT < 41bp 1 0.494862987823132 1 0.40036016702652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580387 chr19:580388 synonymous SNV . 0 22 hm5C_associated_SNPs_13002 0 0 1 1 1 Ribosome 1 0.500231643921437 1 0.999536712157126 hm5C_site_14944 DeepMRMD:1;iRNA_m5C:0.999536712157126 14945 chr19 580388 580388 1 + C A rs2229664 580394 + 580374 580414 41 TGCAGGGTGGACTCCGACGACCAGTGGGGAGAGTACTCCTG TGCAGGGTGGACTCAGACGACCAGTGGGGAGAGTACTCCTG < 41bp 1 0.444087628296082 1 0.143410235643387 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580394 chr19:580388 synonymous SNV . 0 15 hm5C_associated_SNPs_13003 0 0 1 1 1 Ribosome 1 0.500231643924379 1 0.999536712151241 hm5C_site_14945 DeepMRMD:1;iRNA_m5C:0.999536712151241 14946 chr19 580389 580389 1 + G C rs202113312 580385 + 580365 580405 41 TGCTGTGGTTGCAGGGTGGACTCCGACGACCAGTGGGGAGA TGCTGTGGTTGCAGGGTGGACTCCCACGACCAGTGGGGAGA < 41bp 1 0.278959497568888 1 0.117996662855148 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580385 chr19:580389 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_13004 0 0 1 1 1 Ribosome 1 0.500231642684097 1 0.999536714631805 hm5C_site_14946 DeepMRMD:1;iRNA_m5C:0.999536714631805 14947 chr19 580389 580389 1 + G C rs202113312 580387 + 580367 580407 41 CTGTGGTTGCAGGGTGGACTCCGACGACCAGTGGGGAGAGT CTGTGGTTGCAGGGTGGACTCCCACGACCAGTGGGGAGAGT < 41bp 1 0.194757640469809 1 0.0798741281032562 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580387 chr19:580389 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_13005 0 0 1 1 1 Ribosome 1 0.500231643744908 1 0.999536712510184 hm5C_site_14947 DeepMRMD:1;iRNA_m5C:0.999536712510184 14948 chr19 580389 580389 1 + G C rs202113312 580394 + 580374 580414 41 TGCAGGGTGGACTCCGACGACCAGTGGGGAGAGTACTCCTG TGCAGGGTGGACTCCCACGACCAGTGGGGAGAGTACTCCTG < 41bp 1 0.426173867692407 1 0.192533791065216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580394 chr19:580389 nonsynonymous SNV 0.002 0 16 hm5C_associated_SNPs_13006 0 0 1 1 1 Ribosome 1 0.500231643914949 1 0.999536712170102 hm5C_site_14948 DeepMRMD:1;iRNA_m5C:0.999536712170102 14949 chr19 582775 582775 1 + A C rs8637 582774 + 582754 582794 41 CCCGAGGACGCTCCCTGCTCCACGTCTGCGCCGCCGCCGGA CCCGAGGACGCTCCCTGCTCCCCGTCTGCGCCGCCGCCGGA < 41bp 1 0.481645059151555 1 0.0442714691162109 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BSG ENSG00000172270 UTR3 Human protein_coding chr19:582774 chr19:582775 . . 0 22 hm5C_associated_SNPs_13008 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14949 DeepMRMD:1;iRNA_m5C:0.999536712157815 14950 chr19 582775 582775 1 + A C rs8637 582776 + 582756 582796 41 CGAGGACGCTCCCTGCTCCACGTCTGCGCCGCCGCCGGAGT CGAGGACGCTCCCTGCTCCCCGTCTGCGCCGCCGCCGGAGT < 41bp 1 0.368837897384142 1 0.173338949680328 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BSG ENSG00000172270 UTR3 Human protein_coding chr19:582776 chr19:582775 . . 0 20 hm5C_associated_SNPs_13009 0 0 1 0 1 Ribosome 1 0.500231643944187 1 0.999536712111626 hm5C_site_14950 DeepMRMD:1;iRNA_m5C:0.999536712111626 14951 chr19 583314 583314 1 + C T rs114359237 583297 + 583277 583317 41 TCAAGTCACTCCCAAGCCCCCTCCTTGTCTGTGCATCCGGG TCAAGTCACTCCCAAGCCCCCTCCTTGTCTGTGCATCTGGG < 41bp 1 0.404327945684503 1 0.137012541294098 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BSG ENSG00000172270 UTR3 Human protein_coding chr19:583297 chr19:583314 . . 0 38 hm5C_associated_SNPs_13010 0 0 1 0 0 Ribosome 1 0.500231658832539 1 0.999536682334921 hm5C_site_14951 DeepMRMD:1;iRNA_m5C:0.999536682334921 14952 chr19 590381 590381 1 + A G rs552260789 590396 + 590376 590416 41 CGGGCAGCGAGGAGGCGGGCCCGGCGGGGGAGCCGCGCGGC CGGGCGGCGAGGAGGCGGGCCCGGCGGGGGAGCCGCGCGGC < 41bp 1 0.564423393023918 1 0.647869408130646 experiment 0.871153213952164 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCN2 ENSG00000099822 CDS Human protein_coding chr19:590396 chr19:590381 nonsynonymous SNV 0.998 1 6 hm5C_associated_SNPs_13012 0 0 0 0 0 chromatin 1 0.500232484258819 0.704261183738708 0.999535031482363 hm5C_site_14952 DeepMRMD:0.704261183738708;iRNA_m5C:0.999535031482363 14953 chr19 613886 613886 1 + G A rs555844825 613878 + 613858 613898 41 GCCTGCTCACCCGGGGCCGCCGCACGGCGAGCGTGCGGGCT GCCTGCTCACCCGGGGCCGCCGCACGGCAAGCGTGCGGGCT < 41bp 1 0.241577624831323 1 0.186194390058517 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCN2 ENSG00000099822 CDS Human protein_coding chr19:613878 chr19:613886 synonymous SNV . 0 29 hm5C_associated_SNPs_13013 0 0 0 0 1 chromatin 1 0.500231699373668 1 0.999536601252663 hm5C_site_14953 DeepMRMD:1;iRNA_m5C:0.999536601252663 14954 chr19 613898 613898 1 + T A rs1054786 613878 + 613858 613898 41 GCCTGCTCACCCGGGGCCGCCGCACGGCGAGCGTGCGGGCT GCCTGCTCACCCGGGGCCGCCGCACGGCGAGCGTGCGGGCA < 41bp 1 0.278697459897317 1 0.261186063289642 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCN2 ENSG00000099822 CDS Human protein_coding chr19:613878 chr19:613898 synonymous SNV . 0 41 hm5C_associated_SNPs_13014 0 0 0 0 1 chromatin 1 0.500231648810814 1 0.999536702378373 hm5C_site_14954 DeepMRMD:1;iRNA_m5C:0.999536702378373 14955 chr19 680874 680874 1 + C G rs34067740 680867 + 680847 680887 41 AGTGGGCCTCTGGGGGCTCACACTGGGCAAGAGGTATGTGG AGTGGGCCTCTGGGGGCTCACACTGGGGAAGAGGTATGTGG < 41bp 1 0.201109667383876 1 0.267504632472992 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSTL3 ENSG00000070404 intronic Human protein_coding chr19:680867 chr19:680874 . . 0 28 hm5C_associated_SNPs_13015 0 0 0 0 1 Ribosome 1 0.500231643909013 1 0.999536712181975 hm5C_site_14955 DeepMRMD:1;iRNA_m5C:0.999536712181975 14956 chr19 681739 681739 1 + G A rs144896081 681756 + 681736 681776 41 CCCGAGGCCCCCCATCATCCCCTGTTATTTATTGCCACAGC CCCAAGGCCCCCCATCATCCCCTGTTATTTATTGCCACAGC < 41bp 1 0.138836875261104 1 0.04579958319664 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FSTL3 ENSG00000070404 UTR3 Human protein_coding chr19:681756 chr19:681739 . . 0 4 hm5C_associated_SNPs_13016 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_14956 DeepMRMD:1;iRNA_m5C:0.999536712157815 14957 chr19 681747 681747 1 + C A rs373498221 681756 + 681736 681776 41 CCCGAGGCCCCCCATCATCCCCTGTTATTTATTGCCACAGC CCCGAGGCCCCACATCATCCCCTGTTATTTATTGCCACAGC < 41bp 1 0.126420539278106 1 0.0314669609069824 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FSTL3 ENSG00000070404 UTR3 Human protein_coding chr19:681756 chr19:681747 . 0.000 0 12 hm5C_associated_SNPs_13017 0 0 1 0 1 Ribosome 1 0.500231643925868 1 0.999536712148264 hm5C_site_14957 DeepMRMD:1;iRNA_m5C:0.999536712148264 14958 chr19 683086 683086 1 + C T rs374577132 683100 + 683080 683120 41 CCACGACGGCTCACCCTCCCCTCCATCTGCGTTGATGCTCA CCACGATGGCTCACCCTCCCCTCCATCTGCGTTGATGCTCA < 41bp 1 0.696412841953945 1 0.962996602058411 experiment 0.60717431609211 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FSTL3 ENSG00000070404 UTR3 Human protein_coding chr19:683100 chr19:683086 . . 0 7 hm5C_associated_SNPs_13018 0 0 1 0 0 Ribosome 1 0.500231644153504 0.074006795883178 0.999536711692991 hm5C_site_14958 DeepMRMD:0.074006795883178;iRNA_m5C:0.999536711692991 14959 chr19 683103 683103 1 + C T rs80087121 683100 + 683080 683120 41 CCACGACGGCTCACCCTCCCCTCCATCTGCGTTGATGCTCA CCACGACGGCTCACCCTCCCCTCTATCTGCGTTGATGCTCA < 41bp 1 0.539283439975947 1 0.877861022949219 experiment 0.921433120048106 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FSTL3 ENSG00000070404 UTR3 Human protein_coding chr19:683100 chr19:683103 . . 0 24 hm5C_associated_SNPs_13019 0 0 1 0 0 Ribosome 1 0.500231643912657 0.244277954101562 0.999536712174687 hm5C_site_14959 DeepMRMD:0.244277954101562;iRNA_m5C:0.999536712174687 14960 chr19 757037 757037 1 + T C rs35093527 757057 + 757037 757077 41 TACCATCTGGTGTGCATGGGCCCCGAGGCCAGCGGCTGGGG CACCATCTGGTGTGCATGGGCCCCGAGGCCAGCGGCTGGGG < 41bp 1 0.343592325722785 1 0.0730954110622406 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757057 chr19:757037 nonsynonymous SNV 0.022 2 1 hm5C_associated_SNPs_13020 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14960 DeepMRMD:1;iRNA_m5C:0.999536712157815 14961 chr19 757465 757465 1 + C A rs78823735 757482 + 757462 757502 41 CCCCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGG CCCAGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGG < 41bp 1 0.317411851654562 1 0.0308375954627991 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757482 chr19:757465 synonymous SNV . 0 4 hm5C_associated_SNPs_13021 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14961 DeepMRMD:1;iRNA_m5C:0.999536712157815 14962 chr19 757465 757465 1 + C A rs78823735 757484 + 757464 757504 41 CCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTT CAGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTT < 41bp 1 0.198876937848981 1 0.129895031452179 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757484 chr19:757465 synonymous SNV . 0 2 hm5C_associated_SNPs_13022 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14962 DeepMRMD:1;iRNA_m5C:0.999536712157815 14963 chr19 757465 757465 1 + C A rs78823735 757485 + 757465 757505 41 CGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTG AGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTG < 41bp 1 0.178321545109826 1 0.338092982769012 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757485 chr19:757465 synonymous SNV . 0 1 hm5C_associated_SNPs_13023 0 0 0 0 0 nucleus 1 0.500231643933978 1 0.999536712132044 hm5C_site_14963 DeepMRMD:1;iRNA_m5C:0.999536712132044 14964 chr19 757483 757483 1 + G A rs35484463 757482 + 757462 757502 41 CCCCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGG CCCCGGCCCACCTCGGTCCACACCCCTGGAGGAGAACGTGG < 41bp 1 0.277555042617639 1 0.0314813554286957 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757482 chr19:757483 synonymous SNV . 0 22 hm5C_associated_SNPs_13024 0 0 0 0 0 nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_14964 DeepMRMD:1;iRNA_m5C:0.999536712157814 14965 chr19 757483 757483 1 + G A rs35484463 757484 + 757464 757504 41 CCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTT CCGGCCCACCTCGGTCCACACCCCTGGAGGAGAACGTGGTT < 41bp 1 0.257045179125892 1 0.104018419981003 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757484 chr19:757483 synonymous SNV . 0 20 hm5C_associated_SNPs_13025 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14965 DeepMRMD:1;iRNA_m5C:0.999536712157815 14966 chr19 757483 757483 1 + G A rs35484463 757485 + 757465 757505 41 CGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTG CGGCCCACCTCGGTCCACACCCCTGGAGGAGAACGTGGTTG < 41bp 1 0.206061538558642 1 0.309441059827805 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757485 chr19:757483 synonymous SNV . 0 19 hm5C_associated_SNPs_13026 0 0 0 0 0 nucleus 1 0.500533819086939 1 0.998932361826122 hm5C_site_14966 DeepMRMD:1;iRNA_m5C:0.998932361826122 14967 chr19 757483 757483 1 + G A rs35484463 757486 + 757466 757506 41 GGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTGA GGCCCACCTCGGTCCACACCCCTGGAGGAGAACGTGGTTGA < 41bp 1 0.355723275308733 1 0.578854143619537 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757486 chr19:757483 synonymous SNV . 0 18 hm5C_associated_SNPs_13027 0 0 0 0 0 nucleus 1 0.500231643921092 0.842291712760926 0.999536712157815 hm5C_site_14967 DeepMRMD:0.842291712760926;iRNA_m5C:0.999536712157815 14968 chr19 763592 763592 1 + C G rs148858298 763607 + 763587 763627 41 CTGAGCCTCGGGATGGGGCGCCCACCCCCTGCCCTGCCCTG CTGAGGCTCGGGATGGGGCGCCCACCCCCTGCCCTGCCCTG < 41bp 1 0.107212036950208 1 0.133692026138306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 UTR3 Human protein_coding chr19:763607 chr19:763592 . . 0 6 hm5C_associated_SNPs_13030 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14968 DeepMRMD:1;iRNA_m5C:0.999536712157815 14969 chr19 763634 763634 1 + G A rs190674465 763651 + 763631 763671 41 CTCGTGGGAACTGCCAAGACCATCGCCAAGCCCCCACCCTA CTCATGGGAACTGCCAAGACCATCGCCAAGCCCCCACCCTA < 41bp 1 0.405747170747416 1 0.0501812100410461 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MISP ENSG00000099812 UTR3 Human protein_coding chr19:763651 chr19:763634 . . 0 4 hm5C_associated_SNPs_13031 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_14969 DeepMRMD:1;iRNA_m5C:0.999536712157815 14970 chr19 797433 797433 1 + C T rs575861492 797419 + 797399 797439 41 GTCTCCGCCATTTTGTGAGTCTATAACTCGGAGCCGTTGGG GTCTCCGCCATTTTGTGAGTCTATAACTCGGAGCTGTTGGG < 41bp 1 0.246143353108576 1 0.253291189670563 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:797419 chr19:797433 unknown . 0 35 hm5C_associated_SNPs_13032 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14970 DeepMRMD:1;iRNA_m5C:0.999536712157815 14971 chr19 797433 797433 1 + C T rs575861492 797441 + 797421 797461 41 ATAACTCGGAGCCGTTGGGTCGGTTCCTGCTATTCCGGCGC ATAACTCGGAGCTGTTGGGTCGGTTCCTGCTATTCCGGCGC < 41bp 1 0.425371823818148 1 0.243668615818024 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:797441 chr19:797433 unknown . 0 13 hm5C_associated_SNPs_13033 0 0 1 0 1 Cytosol 1 0.500231629070938 1 0.999536741858124 hm5C_site_14971 DeepMRMD:1;iRNA_m5C:0.999536741858124 14972 chr19 797439 797439 1 + G A rs199728719 797419 + 797399 797439 41 GTCTCCGCCATTTTGTGAGTCTATAACTCGGAGCCGTTGGG GTCTCCGCCATTTTGTGAGTCTATAACTCGGAGCCGTTGGA < 41bp 1 0.251057913651455 1 0.307790338993073 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:797419 chr19:797439 unknown . 0 41 hm5C_associated_SNPs_13034 0 0 1 0 1 Cytosol 1 0.500231643921379 1 0.999536712157242 hm5C_site_14972 DeepMRMD:1;iRNA_m5C:0.999536712157242 14973 chr19 797439 797439 1 + G A rs199728719 797441 + 797421 797461 41 ATAACTCGGAGCCGTTGGGTCGGTTCCTGCTATTCCGGCGC ATAACTCGGAGCCGTTGGATCGGTTCCTGCTATTCCGGCGC < 41bp 1 0.496547540475355 1 0.395275056362152 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:797441 chr19:797439 unknown . 0 19 hm5C_associated_SNPs_13035 0 0 1 0 1 Cytosol 1 0.500231643240817 1 0.999536713518365 hm5C_site_14973 DeepMRMD:1;iRNA_m5C:0.999536713518365 14974 chr19 804184 804184 1 + C T rs61757784 804178 + 804158 804198 41 CTGCCCTTTGGGAAGGTCACCAACCTCCTGATGCTGAAGGG CTGCCCTTTGGGAAGGTCACCAACCTTCTGATGCTGAAGGG < 41bp 1 0.312660434783541 1 0.148214608430862 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804178 chr19:804184 synonymous SNV . 0 27 hm5C_associated_SNPs_13036 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_14974 DeepMRMD:1;iRNA_m5C:0.999536712157815 14975 chr19 806430 806430 1 + C G rs199836672 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG GAACGTCCAGGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG < 41bp 1 0.309493253777542 1 0.0518009960651398 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806430 nonsynonymous SNV 0.040 0 10 hm5C_associated_SNPs_13037 0 0 1 0 1 Cytosol 1 0.500231644315641 1 0.999536711368719 hm5C_site_14975 DeepMRMD:1;iRNA_m5C:0.999536711368719 14976 chr19 806430 806430 1 + C G rs199836672 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AACGTCCAGGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC < 41bp 1 0.416822649247117 1 0.107408165931702 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806430 nonsynonymous SNV 0.040 0 9 hm5C_associated_SNPs_13038 0 0 1 0 1 Cytosol 1 0.500231643911924 1 0.999536712176151 hm5C_site_14976 DeepMRMD:1;iRNA_m5C:0.999536712176151 14977 chr19 806430 806430 1 + C G rs199836672 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCAGGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG < 41bp 1 0.485481136715036 1 0.0404009819030762 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806430 nonsynonymous SNV 0.040 0 8 hm5C_associated_SNPs_13039 0 0 1 0 1 Cytosol 1 0.500231644173357 1 0.999536711653286 hm5C_site_14977 DeepMRMD:1;iRNA_m5C:0.999536711653286 14978 chr19 806430 806430 1 + C G rs199836672 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCAGGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG < 41bp 1 0.540910044378857 1 0.210612237453461 experiment 0.918179911242286 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806430 nonsynonymous SNV 0.040 0 7 hm5C_associated_SNPs_13040 0 0 1 0 1 Cytosol 1 0.50023164342321 1 0.999536713153581 hm5C_site_14978 DeepMRMD:1;iRNA_m5C:0.999536713153581 14979 chr19 806430 806430 1 + C G rs199836672 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCAGGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC < 41bp 1 0.552309668890344 1 0.412158727645874 experiment 0.895380662219311 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806430 nonsynonymous SNV 0.040 0 6 hm5C_associated_SNPs_13041 0 0 1 0 1 Cytosol 1 0.500231646169278 1 0.999536707661445 hm5C_site_14979 DeepMRMD:1;iRNA_m5C:0.999536707661445 14980 chr19 806430 806430 1 + C G rs199836672 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG GGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG < 41bp 1 0.0789187667994129 1 0.122403532266617 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806430 nonsynonymous SNV 0.040 0 1 hm5C_associated_SNPs_13043 0 0 1 0 1 Cytosol 1 0.500231643921113 1 0.999536712157775 hm5C_site_14980 DeepMRMD:1;iRNA_m5C:0.999536712157775 14981 chr19 806451 806451 1 + C T rs11549887 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG GAACGTCCACGGCGCCCTGGCCCCCCTGGCTATCCCCTCGG < 41bp 1 0.242405543547542 1 0.0482955276966095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806451 synonymous SNV . 0 31 hm5C_associated_SNPs_13044 0 0 1 0 1 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_14981 DeepMRMD:1;iRNA_m5C:0.999536712157818 14982 chr19 806451 806451 1 + C T rs11549887 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AACGTCCACGGCGCCCTGGCCCCCCTGGCTATCCCCTCGGC < 41bp 1 0.307606061436992 1 0.0644577145576477 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806451 synonymous SNV . 0 30 hm5C_associated_SNPs_13045 0 0 1 0 1 Cytosol 1 0.50023164346749 1 0.999536713065019 hm5C_site_14982 DeepMRMD:1;iRNA_m5C:0.999536713065019 14983 chr19 806451 806451 1 + C T rs11549887 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCACGGCGCCCTGGCCCCCCTGGCTATCCCCTCGGCG < 41bp 1 0.419981915413716 1 0.0258196592330933 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806451 synonymous SNV . 0 29 hm5C_associated_SNPs_13046 0 0 1 0 1 Cytosol 1 0.500231643921071 1 0.999536712157859 hm5C_site_14983 DeepMRMD:1;iRNA_m5C:0.999536712157859 14984 chr19 806451 806451 1 + C T rs11549887 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCACGGCGCCCTGGCCCCCCTGGCTATCCCCTCGGCGG < 41bp 1 0.496027304243967 1 0.311295688152313 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806451 synonymous SNV . 0 28 hm5C_associated_SNPs_13047 0 0 1 0 1 Cytosol 1 0.50023164924384 1 0.99953670151232 hm5C_site_14984 DeepMRMD:1;iRNA_m5C:0.99953670151232 14985 chr19 806451 806451 1 + C T rs11549887 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCACGGCGCCCTGGCCCCCCTGGCTATCCCCTCGGCGGC < 41bp 1 0.588880291385656 1 0.28633064031601 experiment 0.822239417228687 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806451 synonymous SNV . 0 27 hm5C_associated_SNPs_13048 0 0 1 0 1 Cytosol 1 0.500231643915191 1 0.999536712169619 hm5C_site_14985 DeepMRMD:1;iRNA_m5C:0.999536712169619 14986 chr19 806451 806451 1 + C T rs11549887 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCTATCCCCTCGGCGGCGGCGG < 41bp 1 0.168033298458028 1 0.0801767706871033 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806451 synonymous SNV . 0 22 hm5C_associated_SNPs_13049 0 0 1 0 1 Cytosol 1 0.500231643921164 1 0.999536712157671 hm5C_site_14986 DeepMRMD:1;iRNA_m5C:0.999536712157671 14987 chr19 806466 806466 1 + G A rs200741107 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCAGCGG < 41bp 1 0.0583571909430843 1 0.0794002711772919 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806466 synonymous SNV . 0 37 hm5C_associated_SNPs_13051 0 0 1 0 2 Cytosol 1 0.500231643976069 1 0.999536712047862 hm5C_site_14987 DeepMRMD:1;iRNA_m5C:0.999536712047862 14988 chr19 806466 806466 1 + G A rs200741107 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCAGCGGC < 41bp 1 0.172698334165695 1 0.0568119883537292 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806466 synonymous SNV . 0 36 hm5C_associated_SNPs_13052 0 0 1 0 2 Cytosol 1 0.500231613474037 1 0.999536773051926 hm5C_site_14988 DeepMRMD:1;iRNA_m5C:0.999536773051926 14989 chr19 808577 808577 1 + C T rs148751202 808586 + 808566 808606 41 CACAAGCTGCACGGGAAGCCCATCCGCATCACGCTCTCGAA CACAAGCTGCATGGGAAGCCCATCCGCATCACGCTCTCGAA < 41bp 1 0.216874609772555 1 0.157594710588455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808586 chr19:808577 synonymous SNV . 0 12 hm5C_associated_SNPs_13053 0 0 1 0 1 Cytosol 1 0.500231643921107 1 0.999536712157786 hm5C_site_14989 DeepMRMD:1;iRNA_m5C:0.999536712157786 14990 chr19 811216 811216 1 + A C rs71335272 811204 + 811184 811224 41 CACACACCCACCCGGGGTGTCCTGGGGACCCAAGGGGTGGG CACACACCCACCCGGGGTGTCCTGGGGACCCACGGGGTGGG < 41bp 1 0.424455562480532 1 0.342008709907532 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 UTR3 Human protein_coding chr19:811204 chr19:811216 . . 0 33 hm5C_associated_SNPs_13054 0 0 1 0 0 Cytosol 1 0.500231631802879 1 0.999536736394242 hm5C_site_14990 DeepMRMD:1;iRNA_m5C:0.999536736394242 14991 chr19 811216 811216 1 + A C rs71335272 811213 + 811193 811233 41 ACCCGGGGTGTCCTGGGGACCCAAGGGGTGGGGGGGTCACA ACCCGGGGTGTCCTGGGGACCCACGGGGTGGGGGGGTCACA < 41bp 1 0.530807072546448 1 0.212365478277206 experiment 0.938385854907104 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 UTR3 Human protein_coding chr19:811213 chr19:811216 . . 0 24 hm5C_associated_SNPs_13055 0 0 1 0 0 Cytosol 1 0.500231625736118 1 0.999536748527764 hm5C_site_14991 DeepMRMD:1;iRNA_m5C:0.999536748527764 14992 chr19 811223 811223 1 + G A rs6698 811204 + 811184 811224 41 CACACACCCACCCGGGGTGTCCTGGGGACCCAAGGGGTGGG CACACACCCACCCGGGGTGTCCTGGGGACCCAAGGGGTGAG < 41bp 1 0.42003880807925 1 0.369272410869598 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 UTR3 Human protein_coding chr19:811204 chr19:811223 . . 0 40 hm5C_associated_SNPs_13056 0 0 1 0 0 Cytosol 1 0.500231643935528 1 0.999536712128944 hm5C_site_14992 DeepMRMD:1;iRNA_m5C:0.999536712128944 14993 chr19 811223 811223 1 + G A rs6698 811213 + 811193 811233 41 ACCCGGGGTGTCCTGGGGACCCAAGGGGTGGGGGGGTCACA ACCCGGGGTGTCCTGGGGACCCAAGGGGTGAGGGGGTCACA < 41bp 1 0.528719381174241 1 0.574870347976685 experiment 0.942561237651518 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 UTR3 Human protein_coding chr19:811213 chr19:811223 . . 0 31 hm5C_associated_SNPs_13057 0 0 1 0 0 Cytosol 1 0.500231643754054 0.85025930404663 0.999536712491892 hm5C_site_14993 DeepMRMD:0.85025930404663;iRNA_m5C:0.999536712491892 14994 chr19 812209 812209 1 + G A rs14613 812197 + 812177 812217 41 GGCTTGTGACGCGGAGAGAACCGATTAAAACCGTTTGAGAA GGCTTGTGACGCGGAGAGAACCGATTAAAACCATTTGAGAA < 41bp 1 0.439988812359862 1 0.0956390202045441 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTBP1 ENSG00000011304 UTR3 Human protein_coding chr19:812197 chr19:812209 . . 0 33 hm5C_associated_SNPs_13058 0 0 1 1 0 Cytosol 1 0.500231643921017 1 0.999536712157967 hm5C_site_14994 DeepMRMD:1;iRNA_m5C:0.999536712157967 14995 chr19 990238 990238 1 + C A rs117300378 990252 + 990232 990272 41 GGCCGACCCCTCCAGGATTCCGGCGCCCAGGCACGTCTGGT GGCCGAACCCTCCAGGATTCCGGCGCCCAGGCACGTCTGGT < 41bp 1 0.65216525837978 1 0.808264493942261 experiment 0.69566948324044 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR18 ENSG00000065268 CDS Human protein_coding chr19:990252 chr19:990238 nonsynonymous SNV 0.747 0 7 hm5C_associated_SNPs_13062 0 0 1 0 0 Ribosome 1 0.500231851754208 0.383471012115478 0.999536296491584 hm5C_site_14995 DeepMRMD:0.383471012115478;iRNA_m5C:0.999536296491584 14996 chr19 990253 990253 1 + G A rs138997096 990252 + 990232 990272 41 GGCCGACCCCTCCAGGATTCCGGCGCCCAGGCACGTCTGGT GGCCGACCCCTCCAGGATTCCAGCGCCCAGGCACGTCTGGT < 41bp 1 0.558126610638458 1 0.583353698253632 experiment 0.883746778723084 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR18 ENSG00000065268 CDS Human protein_coding chr19:990252 chr19:990253 synonymous SNV . 0 22 hm5C_associated_SNPs_13063 0 0 0 0 0 Ribosome 1 0.500231683263549 0.833292603492736 0.999536633472902 hm5C_site_14996 DeepMRMD:0.833292603492736;iRNA_m5C:0.999536633472902 14997 chr19 1037809 1037809 1 + C G rs144570484 1037820 + 1037800 1037840 41 CACAGTGGCCGATGGGGCTCCCTCGGGCACCGGCGACTGCC CACAGTGGCGGATGGGGCTCCCTCGGGCACCGGCGACTGCC < 41bp 1 0.217553431837383 1 0.14561054110527 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037820 chr19:1037809 synonymous SNV . 0 10 hm5C_associated_SNPs_13064 0 0 1 0 0 Ribosome 1 0.500231645893414 1 0.999536708213172 hm5C_site_14997 DeepMRMD:1;iRNA_m5C:0.999536708213172 14998 chr19 1037857 1037857 1 + C T rs112701025 1037841 + 1037821 1037861 41 CTCGGGCACCGGCGACTGCCCGGACCCGGGGGAGGTCCCTG CTCGGGCACCGGCGACTGCCCGGACCCGGGGGAGGTTCCTG < 41bp 1 0.637893465078184 1 0.355930685997009 experiment 0.724213069843633 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037841 chr19:1037857 synonymous SNV . 0 37 hm5C_associated_SNPs_13065 0 0 0 0 0 Ribosome 1 0.500231097351936 1 0.999537805296127 hm5C_site_14998 DeepMRMD:1;iRNA_m5C:0.999537805296127 14999 chr19 1037857 1037857 1 + C T rs112701025 1037845 + 1037825 1037865 41 GGCACCGGCGACTGCCCGGACCCGGGGGAGGTCCCTGAATA GGCACCGGCGACTGCCCGGACCCGGGGGAGGTTCCTGAATA < 41bp 1 0.653814167784893 1 0.82014936208725 experiment 0.692371664430214 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037845 chr19:1037857 synonymous SNV . 0 33 hm5C_associated_SNPs_13066 0 0 0 0 0 Ribosome 1 0.50023164391704 0.3597012758255 0.99953671216592 hm5C_site_14999 DeepMRMD:0.3597012758255;iRNA_m5C:0.99953671216592 15000 chr19 1037857 1037857 1 + C T rs112701025 1037846 + 1037826 1037866 41 GCACCGGCGACTGCCCGGACCCGGGGGAGGTCCCTGAATAT GCACCGGCGACTGCCCGGACCCGGGGGAGGTTCCTGAATAT < 41bp 1 0.683445636442591 1 0.741259336471558 experiment 0.633108727114817 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037846 chr19:1037857 synonymous SNV . 0 32 hm5C_associated_SNPs_13067 0 0 0 0 0 Ribosome 1 0.50023164399229 0.517481327056884 0.99953671201542 hm5C_site_15000 DeepMRMD:0.517481327056884;iRNA_m5C:0.99953671201542 15001 chr19 1041922 1041922 1 + C A rs146597357 1041909 + 1041889 1041929 41 ATCTGTAATGTGAACAACACCTGCTTTCCGCAGCTGACACC ATCTGTAATGTGAACAACACCTGCTTTCCGCAGATGACACC < 41bp 1 0.356223996540462 1 0.0748174488544464 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041909 chr19:1041922 nonsynonymous SNV 0.001 1 34 hm5C_associated_SNPs_13068 0 0 0 0 2 Endoplasmic reticulum 1 0.50022616105242 1 0.999547677895159 hm5C_site_15001 DeepMRMD:1;iRNA_m5C:0.999547677895159 15002 chr19 1041922 1041922 1 + C A rs146597357 1041928 + 1041908 1041948 41 CCTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGC CCTGCTTTCCGCAGATGACACCGGGCGAGGAGCCCGGGCGC < 41bp 1 0.623152367650564 1 0.820521235466003 experiment 0.753695264698873 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041928 chr19:1041922 nonsynonymous SNV 0.001 1 15 hm5C_associated_SNPs_13069 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643932492 0.358957529067994 0.999536712135017 hm5C_site_15002 DeepMRMD:0.358957529067994;iRNA_m5C:0.999536712135017 15003 chr19 1041922 1041922 1 + C A rs146597357 1041929 + 1041909 1041949 41 CTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCC CTGCTTTCCGCAGATGACACCGGGCGAGGAGCCCGGGCGCC < 41bp 1 0.41048374329147 1 0.91149914264679 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041929 chr19:1041922 nonsynonymous SNV 0.001 1 14 hm5C_associated_SNPs_13070 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921056 0.17700171470642 0.999536712157887 hm5C_site_15003 DeepMRMD:0.17700171470642;iRNA_m5C:0.999536712157887 15004 chr19 1041922 1041922 1 + C A rs146597357 1041933 + 1041913 1041953 41 TTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAG TTTCCGCAGATGACACCGGGCGAGGAGCCCGGGCGCCTGAG < 41bp 1 0.471133762436971 1 0.758113920688629 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041933 chr19:1041922 nonsynonymous SNV 0.001 1 10 hm5C_associated_SNPs_13071 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643946969 0.483772158622742 0.999536712106063 hm5C_site_15004 DeepMRMD:0.483772158622742;iRNA_m5C:0.999536712106063 15005 chr19 1041922 1041922 1 + C A rs146597357 1041940 + 1041920 1041960 41 AGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC AGATGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC < 41bp 1 0.334108633381677 1 0.429884046316147 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041940 chr19:1041922 nonsynonymous SNV 0.001 1 3 hm5C_associated_SNPs_13072 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920276 1 0.999536712159448 hm5C_site_15005 DeepMRMD:1;iRNA_m5C:0.999536712159448 15006 chr19 1041922 1041922 1 + C A rs146597357 1041941 + 1041921 1041961 41 GCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA GATGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA < 41bp 1 0.33473103386817 1 0.881372809410095 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041941 chr19:1041922 nonsynonymous SNV 0.001 1 2 hm5C_associated_SNPs_13073 0 0 0 0 2 Endoplasmic reticulum 1 0.500231640774052 0.23725438117981 0.999536718451896 hm5C_site_15006 DeepMRMD:0.23725438117981;iRNA_m5C:0.999536718451896 15007 chr19 1041922 1041922 1 + C A rs146597357 1041942 + 1041922 1041962 41 CTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA ATGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA < 41bp 1 0.445717387775845 1 0.8167644739151 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041942 chr19:1041922 nonsynonymous SNV 0.001 1 1 hm5C_associated_SNPs_13074 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.3664710521698 0.999536712157815 hm5C_site_15007 DeepMRMD:0.3664710521698;iRNA_m5C:0.999536712157815 15008 chr19 1055299 1055299 1 + G A rs144595576 1055304 + 1055284 1055324 41 AGAACCTGACAGGCCGGAACCTGTCTGACTTCCTGGTCAAG AGAACCTGACAGGCCAGAACCTGTCTGACTTCCTGGTCAAG < 41bp 1 0.110362772248838 1 0.0831625163555145 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1055304 chr19:1055299 nonsynonymous SNV 0.280 4 16 hm5C_associated_SNPs_13075 0 0 1 0 1 Endoplasmic reticulum 1 0.500228569372397 1 0.999542861255207 hm5C_site_15008 DeepMRMD:1;iRNA_m5C:0.999542861255207 15009 chr19 1105668 1105668 1 + T A rs200291407 1105660 + 1105640 1105680 41 CACCTTGGCCGCCACAGGAGCCAGGGAGTAACGAAGAGATC CACCTTGGCCGCCACAGGAGCCAGGGAGAAACGAAGAGATC < 41bp 1 0.332581881262631 1 0.523594856262207 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GPX4 ENSG00000167468 CDS Human protein_coding chr19:1105660 chr19:1105668 nonsynonymous SNV 0.132 1 29 hm5C_associated_SNPs_13076 0 0 1 0 1 Cytosol 1 0.500231643982658 0.952810287475586 0.999536712034684 hm5C_site_15009 DeepMRMD:0.952810287475586;iRNA_m5C:0.999536712034684 15010 chr19 1241781 1241781 1 + C A rs564285599 1241782 + 1241762 1241802 41 GCGTCGTCCTCCTCGCCCTCCAGGCCGCCCGCGCCGCGCCG GCGTCGTCCTCCTCGCCCTACAGGCCGCCCGCGCCGCGCCG < 41bp 1 0.687150566972673 1 0.83154571056366 experiment 0.625698866054653 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5D ENSG00000099624 UTR5 Human protein_coding chr19:1241782 chr19:1241781 . . 0 20 hm5C_associated_SNPs_13079 0 0 1 0 0 Ribosome 1 0.500231658088811 0.33690857887268 0.999536683822378 hm5C_site_15010 DeepMRMD:0.33690857887268;iRNA_m5C:0.999536683822378 15011 chr19 1241781 1241781 1 + C A rs564285599 1241786 + 1241766 1241806 41 CGTCCTCCTCGCCCTCCAGGCCGCCCGCGCCGCGCCGGAGT CGTCCTCCTCGCCCTACAGGCCGCCCGCGCCGCGCCGGAGT < 41bp 1 0.270522177436277 1 0.0973420143127441 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5D ENSG00000099624 UTR5 Human protein_coding chr19:1241786 chr19:1241781 . . 0 16 hm5C_associated_SNPs_13080 0 0 1 0 0 Ribosome 1 0.500231643915117 1 0.999536712169767 hm5C_site_15011 DeepMRMD:1;iRNA_m5C:0.999536712169767 15012 chr19 1244764 1244764 1 + C T rs559902384 1244784 + 1244764 1244804 41 CGGAGCCACCTCTGGATGAACTGCCCCCAGCCCCCGCCCCA TGGAGCCACCTCTGGATGAACTGCCCCCAGCCCCCGCCCCA < 41bp 1 0.641865276229728 1 0.0735363960266113 experiment 0.716269447540544 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP5D ENSG00000099624 UTR3 Human protein_coding chr19:1244784 chr19:1244764 . . 0 1 hm5C_associated_SNPs_13081 0 0 1 0 1 Ribosome 1 0.500231639829035 1 0.99953672034193 hm5C_site_15012 DeepMRMD:1;iRNA_m5C:0.99953672034193 15013 chr19 1254317 1254317 1 + G A rs562824172 1254325 + 1254305 1254345 41 CCGCTGCTGCGCGGGGGGACCCCAGCATAGCCTCCCCCGTG CCGCTGCTGCGCAGGGGGACCCCAGCATAGCCTCCCCCGTG < 41bp 1 0.513725737070674 1 0.273094415664673 experiment 0.972548525858651 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MIDN ENSG00000167470 CDS Human protein_coding chr19:1254325 chr19:1254317 nonsynonymous SNV 0.002 1 13 hm5C_associated_SNPs_13082 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15013 DeepMRMD:1;iRNA_m5C:0.999536712157815 15014 chr19 1254342 1254342 1 + C G rs575435876 1254325 + 1254305 1254345 41 CCGCTGCTGCGCGGGGGGACCCCAGCATAGCCTCCCCCGTG CCGCTGCTGCGCGGGGGGACCCCAGCATAGCCTCCCCGGTG < 41bp 1 0.580056204479297 1 0.432327836751938 experiment 0.839887591041407 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MIDN ENSG00000167470 CDS Human protein_coding chr19:1254325 chr19:1254342 synonymous SNV . 0 38 hm5C_associated_SNPs_13083 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15014 DeepMRMD:1;iRNA_m5C:0.999536712157815 15015 chr19 1258940 1258940 1 + G T rs117875320 1258928 + 1258908 1258948 41 TTAAATAACGTCTGTGCCTCCACTGGTTGAGGGTGGAACCT TTAAATAACGTCTGTGCCTCCACTGGTTGAGGTTGGAACCT < 41bp 1 0.418164602425179 1 0.277173906564713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MIDN ENSG00000167470 UTR3 Human protein_coding chr19:1258928 chr19:1258940 . . 0 33 hm5C_associated_SNPs_13084 0 0 1 0 0 chromatin 1 0.500232898561136 1 0.999534202877729 hm5C_site_15015 DeepMRMD:1;iRNA_m5C:0.999534202877729 15016 chr19 1271648 1271648 1 + C A rs115311065 1271650 + 1271630 1271670 41 AGGTGAGGGGGAGGCCGGCCCAAGCACAGGGGTGGTTGCGG AGGTGAGGGGGAGGCCGGACCAAGCACAGGGGTGGTTGCGG < 41bp 1 0.442602325300915 1 0.551763117313385 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CIRBP ENSG00000099622 UTR3 Human protein_coding chr19:1271650 chr19:1271648 . . 0 19 hm5C_associated_SNPs_13085 0 0 0 0 1 Ribosome 1 0.500231643921093 0.89647376537323 0.999536712157815 hm5C_site_15016 DeepMRMD:0.89647376537323;iRNA_m5C:0.999536712157815 15017 chr19 1272187 1272187 1 + C G rs550382253 1272179 + 1272159 1272199 41 GTGCTTGCCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCAT GTGCTTGCCCAGAAGAGGCGCATCTGTCGTCTCAGAGCCAT < 41bp 1 0.127539771658169 1 0.0740978717803955 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272179 chr19:1272187 synonymous SNV . 0 29 hm5C_associated_SNPs_13086 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15017 DeepMRMD:1;iRNA_m5C:0.999536712157815 15018 chr19 1272187 1272187 1 + C G rs550382253 1272182 + 1272162 1272202 41 CTTGCCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCATTTC CTTGCCCAGAAGAGGCGCATCTGTCGTCTCAGAGCCATTTC < 41bp 1 0.472899905535704 1 0.0534769892692566 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272182 chr19:1272187 synonymous SNV . 0 26 hm5C_associated_SNPs_13087 0 0 1 0 0 Ribosome 1 0.500233986773688 1 0.999532026452624 hm5C_site_15018 DeepMRMD:1;iRNA_m5C:0.999532026452624 15019 chr19 1360996 1360996 1 + G A rs200272591 1361015 + 1360995 1361035 41 TGTCTTCCTTGCCCGGATTCCCAGAAGCTGGAGAAAGGTAA TATCTTCCTTGCCCGGATTCCCAGAAGCTGGAGAAAGGTAA < 41bp 1 0.346455606364413 1 0.480246156454086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MUM1 ENSG00000160953 CDS Human protein_coding chr19:1361015 chr19:1360996 nonsynonymous SNV 0.002 0 2 hm5C_associated_SNPs_13090 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_15019 DeepMRMD:1;iRNA_m5C:0.999536712157815 15020 chr19 1371140 1371140 1 + C T rs145734825 1371134 + 1371114 1371154 41 GGGCCTGCGCTGGGATTTTGCAACTCCGCACGAGGAGGCTG GGGCCTGCGCTGGGATTTTGCAACTCTGCACGAGGAGGCTG < 41bp 1 0.339630844093489 1 0.1300048828125 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MUM1 ENSG00000160953 UTR3 Human protein_coding chr19:1371134 chr19:1371140 . . 0 27 hm5C_associated_SNPs_13091 0 0 1 0 0 Cytosol 1 0.500231643921137 1 0.999536712157727 hm5C_site_15020 DeepMRMD:1;iRNA_m5C:0.999536712157727 15021 chr19 1383547 1383547 1 + C A rs111321874 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GACGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG < 41bp 1 0.569772257075157 1 0.34613311290741 experiment 0.860455485849686 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383547 . . 0 2 hm5C_associated_SNPs_13092 0 0 1 0 1 chromatin 1 0.500231643996898 1 0.999536712006204 hm5C_site_15021 DeepMRMD:1;iRNA_m5C:0.999536712006204 15022 chr19 1383550 1383550 1 + G A rs117758624 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GCCGAAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG < 41bp 1 0.615747096497727 1 0.335829138755798 experiment 0.768505807004547 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383550 . . 0 5 hm5C_associated_SNPs_13093 0 0 1 0 1 chromatin 1 0.500231642643038 1 0.999536714713924 hm5C_site_15022 DeepMRMD:1;iRNA_m5C:0.999536714713924 15023 chr19 1383555 1383555 1 + C A rs183203340 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GCCGGAGCGAAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG < 41bp 1 0.591996311703871 1 0.417900025844574 experiment 0.816007376592257 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383555 . . 0 10 hm5C_associated_SNPs_13094 0 0 1 0 1 chromatin 1 0.500231631273697 1 0.999536737452606 hm5C_site_15023 DeepMRMD:1;iRNA_m5C:0.999536737452606 15024 chr19 1383559 1383559 1 + G A rs112353221 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GCCGGAGCGCAGTATCGTCTCTGTGGCGCAATCGGTTAGCG < 41bp 1 0.555235490941767 1 0.321859776973724 experiment 0.889529018116466 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383559 . . 0 14 hm5C_associated_SNPs_13095 0 0 1 0 1 chromatin 1 0.500231643546718 1 0.999536712906564 hm5C_site_15024 DeepMRMD:1;iRNA_m5C:0.999536712906564 15025 chr19 1383561 1383561 1 + C A rs115444924 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GCCGGAGCGCAGTGTAGTCTCTGTGGCGCAATCGGTTAGCG < 41bp 1 0.642507225986442 1 0.29828816652298 experiment 0.714985548027115 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383561 . . 0 16 hm5C_associated_SNPs_13096 0 0 1 0 1 chromatin 1 0.500226877755598 1 0.999546244488803 hm5C_site_15025 DeepMRMD:1;iRNA_m5C:0.999546244488803 15026 chr19 1383578 1383578 1 + C A rs559354209 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATAGGTTAGCG < 41bp 1 0.601365488300578 1 0.573444306850433 experiment 0.797269023398845 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383578 . . 0 33 hm5C_associated_SNPs_13098 0 0 1 0 1 chromatin 1 0.500231520885077 0.853111386299134 0.999536958229846 hm5C_site_15026 DeepMRMD:0.853111386299134;iRNA_m5C:0.999536958229846 15027 chr19 1383578 1383578 1 + C A rs559354209 1383594 + 1383574 1383614 41 CAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTG CAATAGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTG < 41bp 1 0.15184927845914 1 0.109192043542862 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383594 chr19:1383578 . . 0 5 hm5C_associated_SNPs_13099 0 0 1 0 1 chromatin 1 0.500231643874756 1 0.999536712250488 hm5C_site_15027 DeepMRMD:1;iRNA_m5C:0.999536712250488 15028 chr19 1383582 1383582 1 + T G rs138144610 1383566 + 1383546 1383586 41 GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTTAGCG GCCGGAGCGCAGTGTCGTCTCTGTGGCGCAATCGGTGAGCG < 41bp 1 0.675031521874082 1 0.40507185459137 experiment 0.649936956251837 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383566 chr19:1383582 . . 0 37 hm5C_associated_SNPs_13100 0 0 1 0 1 chromatin 1 0.500231866937026 1 0.999536266125948 hm5C_site_15028 DeepMRMD:1;iRNA_m5C:0.999536266125948 15029 chr19 1383582 1383582 1 + T G rs138144610 1383594 + 1383574 1383614 41 CAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTG CAATCGGTGAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTG < 41bp 1 0.163623445843092 1 0.100306391716003 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383594 chr19:1383582 . . 0 9 hm5C_associated_SNPs_13101 0 0 1 0 1 chromatin 1 0.500231643896853 1 0.999536712206294 hm5C_site_15029 DeepMRMD:1;iRNA_m5C:0.999536712206294 15030 chr19 1383591 1383591 1 + C G rs561309612 1383594 + 1383574 1383614 41 CAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTG CAATCGGTTAGCGCGTTGGGCTGTTAACCGAAAGGTTGGTG < 41bp 1 0.138365620650031 1 0.086452454328537 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS7 ENSG00000115286 UTR5 Human protein_coding chr19:1383594 chr19:1383591 . . 0 18 hm5C_associated_SNPs_13102 0 0 1 0 1 chromatin 1 0.500231643921065 1 0.999536712157871 hm5C_site_15030 DeepMRMD:1;iRNA_m5C:0.999536712157871 15031 chr19 1395028 1395028 1 + C T rs115766881 1395034 + 1395014 1395054 41 GTCCAGGGCAGCCCCGGGCCCTGCTCCCCACTGCTAAGTGT GTCCAGGGCAGCCCTGGGCCCTGCTCCCCACTGCTAAGTGT < 41bp 1 0.34127001907829 1 0.0180143415927887 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDUFS7 ENSG00000248015 ncRNA_exonic Human antisense chr19:1395034 chr19:1395028 . . 0 15 hm5C_associated_SNPs_13104 0 0 1 0 0 chromatin 1 0.50023164466593 1 0.99953671066814 hm5C_site_15031 DeepMRMD:1;iRNA_m5C:0.99953671066814 15032 chr19 1434842 1434842 1 + C T rs61735591 1434836 + 1434816 1434856 41 TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG TCCGTGCCAGGGTCGGGGGGCCCCCCTGCCGGCGGCAGCGG < 41bp 1 0.368643727578229 1 0.107945740222931 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434836 chr19:1434842 synonymous SNV . 0 27 hm5C_associated_SNPs_13105 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15032 DeepMRMD:1;iRNA_m5C:0.999536712157815 15033 chr19 1434842 1434842 1 + C T rs61735591 1434837 + 1434817 1434857 41 CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC CCGTGCCAGGGTCGGGGGGCCCCCCTGCCGGCGGCAGCGGC < 41bp 1 0.450635154683032 1 0.195636570453644 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434837 chr19:1434842 synonymous SNV . 0 26 hm5C_associated_SNPs_13106 0 0 1 0 0 chromatin 1 0.500231643920013 1 0.999536712159975 hm5C_site_15033 DeepMRMD:1;iRNA_m5C:0.999536712159975 15034 chr19 1434842 1434842 1 + C T rs61735591 1434838 + 1434818 1434858 41 CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT CGTGCCAGGGTCGGGGGGCCCCCCTGCCGGCGGCAGCGGCT < 41bp 1 0.598642811103734 1 0.340992152690887 experiment 0.802714377792533 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434838 chr19:1434842 synonymous SNV . 0 25 hm5C_associated_SNPs_13107 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15034 DeepMRMD:1;iRNA_m5C:0.999536712157815 15035 chr19 1434842 1434842 1 + C T rs61735591 1434839 + 1434819 1434859 41 GTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCTT GTGCCAGGGTCGGGGGGCCCCCCTGCCGGCGGCAGCGGCTT < 41bp 1 0.551380431264523 1 0.142873734235764 experiment 0.897239137470953 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434839 chr19:1434842 synonymous SNV . 0 24 hm5C_associated_SNPs_13108 0 0 1 0 0 chromatin 1 0.500231643921088 1 0.999536712157824 hm5C_site_15035 DeepMRMD:1;iRNA_m5C:0.999536712157824 15036 chr19 1438865 1438865 1 + C T rs7251165 1438868 + 1438848 1438888 41 ACCTACCGCGGCGTGGACCTCGACCAGCTGCTGGACATGTC ACCTACCGCGGCGTGGATCTCGACCAGCTGCTGGACATGTC < 41bp 1 0.676560102879026 1 0.245660245418549 experiment 0.646879794241948 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1438868 chr19:1438865 synonymous SNV . 0 18 hm5C_associated_SNPs_13109 0 0 1 0 2 Ribosome 1 0.500231644184082 1 0.999536711631836 hm5C_site_15036 DeepMRMD:1;iRNA_m5C:0.999536711631836 15037 chr19 1440374 1440374 1 + C T rs139332437 1440359 + 1440339 1440379 41 CTCCCGCAGCCCGAGATGATCGGCCACTACCTGGGCGAGTT CTCCCGCAGCCCGAGATGATCGGCCACTACCTGGGTGAGTT < 41bp 1 0.595227073098064 1 0.707190155982971 experiment 0.809545853803871 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440359 chr19:1440374 synonymous SNV . 0 36 hm5C_associated_SNPs_13110 0 0 1 0 1 Ribosome 1 0.500231643921092 0.585619688034058 0.999536712157815 hm5C_site_15037 DeepMRMD:0.585619688034058;iRNA_m5C:0.999536712157815 15038 chr19 1453531 1453531 1 + G A rs150959468 1453533 + 1453513 1453553 41 GAGGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAG GAGGGCAGCCCAGTACACAGCTCCGGGCCCTCCAAGGACAG < 41bp 1 0.370599770492496 1 0.538624167442322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453533 chr19:1453531 nonsynonymous SNV 0.014 1 19 hm5C_associated_SNPs_13111 0 0 0 0 1 nucleolus 1 0.500231643920944 0.922751665115356 0.999536712158112 hm5C_site_15038 DeepMRMD:0.922751665115356;iRNA_m5C:0.999536712158112 15039 chr19 1453531 1453531 1 + G A rs150959468 1453535 + 1453515 1453555 41 GGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCT GGGCAGCCCAGTACACAGCTCCGGGCCCTCCAAGGACAGCT < 41bp 1 0.201170555401579 1 0.486921727657318 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453535 chr19:1453531 nonsynonymous SNV 0.014 1 17 hm5C_associated_SNPs_13112 0 0 0 0 1 nucleolus 1 0.500231649959157 1 0.999536700081687 hm5C_site_15039 DeepMRMD:1;iRNA_m5C:0.999536700081687 15040 chr19 1453531 1453531 1 + G A rs150959468 1453536 + 1453516 1453556 41 GGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTT GGCAGCCCAGTACACAGCTCCGGGCCCTCCAAGGACAGCTT < 41bp 1 0.188483374200707 1 0.579424619674683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453536 chr19:1453531 nonsynonymous SNV 0.014 1 16 hm5C_associated_SNPs_13113 0 0 0 0 1 nucleolus 1 0.500231643921092 0.841150760650634 0.999536712157815 hm5C_site_15040 DeepMRMD:0.841150760650634;iRNA_m5C:0.999536712157815 15041 chr19 1453531 1453531 1 + G A rs150959468 1453540 + 1453520 1453560 41 GCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGG GCCCAGTACACAGCTCCGGGCCCTCCAAGGACAGCTTTGGG < 41bp 1 0.0107277090891951 1 0.110493063926697 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453540 chr19:1453531 nonsynonymous SNV 0.014 1 12 hm5C_associated_SNPs_13114 0 0 0 0 1 nucleolus 1 0.500231643920114 1 0.999536712159771 hm5C_site_15041 DeepMRMD:1;iRNA_m5C:0.999536712159771 15042 chr19 1453531 1453531 1 + G A rs150959468 1453541 + 1453521 1453561 41 CCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGGG CCCAGTACACAGCTCCGGGCCCTCCAAGGACAGCTTTGGGG < 41bp 1 0.0127983014652098 1 0.111840277910233 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453541 chr19:1453531 nonsynonymous SNV 0.014 1 11 hm5C_associated_SNPs_13115 0 0 0 0 1 nucleolus 1 0.500231643921089 1 0.999536712157822 hm5C_site_15042 DeepMRMD:1;iRNA_m5C:0.999536712157822 15043 chr19 1912877 1912877 1 + C T rs142175228 1912858 + 1912838 1912878 41 CTGCTCCTTCGCCCCGGCCGCTGCCCCCCAGGCCGTCCGCG CTGCTCCTTCGCCCCGGCCGCTGCCCCCCAGGCCGTCCGTG < 41bp 1 0.129347647123089 1 0.231422543525696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAT3 ENSG00000213638 CDS Human protein_coding chr19:1912858 chr19:1912877 synonymous SNV . 0 40 hm5C_associated_SNPs_13116 0 0 1 0 0 exosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_15043 DeepMRMD:1;iRNA_m5C:0.999536712157812 15044 chr19 2226655 2226655 1 + C A rs113164803 2226642 + 2226622 2226662 41 CTGAGCAAGAGGCAGCTGGACGGCCTGGCTGGGCTGAAGGG CTGAGCAAGAGGCAGCTGGACGGCCTGGCTGGGATGAAGGG < 41bp 1 0.192032549539395 1 0.247294008731842 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOT1L ENSG00000104885 CDS Human protein_coding chr19:2226642 chr19:2226655 nonsynonymous SNV 0.045 0 34 hm5C_associated_SNPs_13120 0 0 1 0 0 Cytosol 1 0.500231646258941 1 0.999536707482118 hm5C_site_15044 DeepMRMD:1;iRNA_m5C:0.999536707482118 15045 chr19 2232049 2232049 1 + G A rs740404 2232037 + 2232017 2232057 41 TCTTCTCAGACACTCCCAGACTGAGGGGTGGTGTGTGGCGG TCTTCTCAGACACTCCCAGACTGAGGGGTGGTATGTGGCGG < 41bp 1 0.495801639755861 1 0.329689383506775 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DOT1L ENSG00000104885 UTR3 Human protein_coding chr19:2232037 chr19:2232049 . . 0 33 hm5C_associated_SNPs_13121 0 0 0 0 0 Cytosol 1 0.500231643921496 1 0.999536712157008 hm5C_site_15045 DeepMRMD:1;iRNA_m5C:0.999536712157008 15046 chr19 2251512 2251512 1 + T A rs7252789 2251516 + 2251496 2251536 41 TCGCGCTCTGCCCAGGTGGCCCCGGCGGCCTCGGCGATCCC TCGCGCTCTGCCCAGGAGGCCCCGGCGGCCTCGGCGATCCC < 41bp 1 0.363621879571766 1 0.167533338069916 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AMH ENSG00000104899 CDS Human protein_coding chr19:2251516 chr19:2251512 synonymous SNV . 0 17 hm5C_associated_SNPs_13122 0 0 0 0 0 exosome 1 0.500231042814636 1 0.999537914370729 hm5C_site_15046 DeepMRMD:1;iRNA_m5C:0.999537914370729 15047 chr19 2271386 2271386 1 + C T rs28384673 2271393 + 2271373 2271413 41 ATCATCTTCAGTTCCAGGGTCTCCCTCCACTGCTGTAGTAA ATCATCTTCAGTTTCAGGGTCTCCCTCCACTGCTGTAGTAA < 41bp 1 0.234418483098529 1 0.258628219366074 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271393 chr19:2271386 nonsynonymous SNV 0.597 1 14 hm5C_associated_SNPs_13123 0 0 1 1 1 Ribosome 1 0.500231644040634 1 0.999536711918732 hm5C_site_15047 DeepMRMD:1;iRNA_m5C:0.999536711918732 15048 chr19 2271937 2271937 1 + G A rs533784107 2271919 + 2271899 2271939 41 GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCGAG GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCAAG < 41bp 1 0.678680097539645 1 0.861434459686279 experiment 0.642639804920709 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271919 chr19:2271937 nonsynonymous SNV 0.726 1 39 hm5C_associated_SNPs_13126 0 0 1 2 1 Ribosome 1 0.500231643969149 0.277131080627442 0.999536712061702 hm5C_site_15048 DeepMRMD:0.277131080627442;iRNA_m5C:0.999536712061702 15049 chr19 2328712 2328712 1 + G T rs538146670 2328700 + 2328680 2328720 41 GCCGTTGGTTGCGGCGGGCACCGGCCGACATGGCGGCAGCG GCCGTTGGTTGCGGCGGGCACCGGCCGACATGTCGGCAGCG < 41bp 1 0.52675122319858 1 0.658042669296265 experiment 0.94649755360284 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2328700 chr19:2328712 . 0.504 1 33 hm5C_associated_SNPs_13127 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643730082 0.68391466140747 0.999536712539837 hm5C_site_15049 DeepMRMD:0.68391466140747;iRNA_m5C:0.999536712539837 15050 chr19 2328719 2328719 1 + C A rs556086917 2328700 + 2328680 2328720 41 GCCGTTGGTTGCGGCGGGCACCGGCCGACATGGCGGCAGCG GCCGTTGGTTGCGGCGGGCACCGGCCGACATGGCGGCAGAG < 41bp 1 0.522624437220898 1 0.608023822307587 experiment 0.954751125558204 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2328700 chr19:2328719 . 0.013 0 40 hm5C_associated_SNPs_13128 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921037 0.783952355384826 0.999536712157926 hm5C_site_15050 DeepMRMD:0.783952355384826;iRNA_m5C:0.999536712157926 15051 chr19 2341138 2341138 1 + G T rs77578073 2341147 + 2341127 2341167 41 CAGCACCGCGTGATGAAGAGCCCTGGCCCCGGGCTGCTCTG CAGCACCGCGTTATGAAGAGCCCTGGCCCCGGGCTGCTCTG < 41bp 1 0.110830838265522 1 0.146822065114975 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2341147 chr19:2341138 . . 0 12 hm5C_associated_SNPs_13129 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921052 1 0.999536712157896 hm5C_site_15051 DeepMRMD:1;iRNA_m5C:0.999536712157896 15052 chr19 2341138 2341138 1 + G T rs77578073 2341154 + 2341134 2341174 41 GCGTGATGAAGAGCCCTGGCCCCGGGCTGCTCTGACAGGGC GCGTTATGAAGAGCCCTGGCCCCGGGCTGCTCTGACAGGGC < 41bp 1 0.256968067167848 1 0.45063790678978 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2341154 chr19:2341138 . . 0 5 hm5C_associated_SNPs_13130 0 0 1 0 0 Endoplasmic reticulum 1 0.500231626094295 1 0.99953674781141 hm5C_site_15052 DeepMRMD:1;iRNA_m5C:0.99953674781141 15053 chr19 2341138 2341138 1 + G T rs77578073 2341155 + 2341135 2341175 41 CGTGATGAAGAGCCCTGGCCCCGGGCTGCTCTGACAGGGCT CGTTATGAAGAGCCCTGGCCCCGGGCTGCTCTGACAGGGCT < 41bp 1 0.414008647288848 1 0.572585582733154 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2341155 chr19:2341138 . . 0 4 hm5C_associated_SNPs_13131 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643936612 0.854828834533692 0.999536712126776 hm5C_site_15053 DeepMRMD:0.854828834533692;iRNA_m5C:0.999536712126776 15054 chr19 2343243 2343243 1 + G A rs145227878 2343242 + 2343222 2343262 41 CTCCAGGATGCCCTGGGCATCGCCTTCTGCCTCTACATGCT CTCCAGGATGCCCTGGGCATCACCTTCTGCCTCTACATGCT < 41bp 1 0.31426226415951 1 0.0544218719005585 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2343242 chr19:2343243 . 0.982 1 22 hm5C_associated_SNPs_13132 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920852 1 0.999536712158297 hm5C_site_15054 DeepMRMD:1;iRNA_m5C:0.999536712158297 15055 chr19 2425366 2425366 1 + C G rs201826994 2425386 + 2425366 2425406 41 CGGCAGCTGCAGAAGGCGGCCGTGCGCCTCCTCAGCGAGCA GGGCAGCTGCAGAAGGCGGCCGTGCGCCTCCTCAGCGAGCA < 41bp 1 0.368501802225321 1 0.462082415819168 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2425386 chr19:2425366 nonsynonymous SNV 0.971 3 1 hm5C_associated_SNPs_13133 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15055 DeepMRMD:1;iRNA_m5C:0.999536712157815 15056 chr19 2425371 2425371 1 + G A rs374108172 2425386 + 2425366 2425406 41 CGGCAGCTGCAGAAGGCGGCCGTGCGCCTCCTCAGCGAGCA CGGCAACTGCAGAAGGCGGCCGTGCGCCTCCTCAGCGAGCA < 41bp 1 0.338685157174634 1 0.486009776592255 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2425386 chr19:2425371 synonymous SNV . 0 6 hm5C_associated_SNPs_13134 0 0 0 0 1 chromatin 1 0.500231643921098 1 0.999536712157805 hm5C_site_15056 DeepMRMD:1;iRNA_m5C:0.999536712157805 15057 chr19 2476314 2476314 1 + G A rs531896163 2476310 + 2476290 2476330 41 TCGGATTTTGCAATTTCTCCCTGGGGACTGCCGTGGAGCCG TCGGATTTTGCAATTTCTCCCTGGAGACTGCCGTGGAGCCG < 41bp 1 0.691984859886735 1 0.802474498748779 experiment 0.616030280226529 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GADD45B ENSG00000099860 UTR5 Human protein_coding chr19:2476310 chr19:2476314 . . 0 25 hm5C_associated_SNPs_13135 0 0 1 0 1 nucleus 1 0.500230882496355 0.395051002502442 0.999538235007289 hm5C_site_15057 DeepMRMD:0.395051002502442;iRNA_m5C:0.999538235007289 15058 chr19 2794802 2794802 1 + C A rs36054718 2794811 + 2794791 2794831 41 CATGTTTCCCCCTCCAAGGACATCCGGACAGCCAGCACAGA CATGTTTCCCCATCCAAGGACATCCGGACAGCCAGCACAGA < 41bp 1 0.0499245239868718 1 0.278768509626389 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THOP1 ENSG00000172009 CDS Human protein_coding chr19:2794811 chr19:2794802 synonymous SNV . 0 12 hm5C_associated_SNPs_13136 0 0 1 0 1 Ribosome 1 0.50023164365514 1 0.999536712689719 hm5C_site_15058 DeepMRMD:1;iRNA_m5C:0.999536712689719 15059 chr19 2810273 2810273 1 + C T rs112329923 2810285 + 2810265 2810305 41 GACCTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCGG GACCTGGGTACTCTGAGGCTCTGCCCCATCCCTGCAGGCGG < 41bp 1 0.219332841860836 1 0.500227630138397 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control THOP1 ENSG00000172009 UTR5 Human protein_coding chr19:2810285 chr19:2810273 . . 0 9 hm5C_associated_SNPs_13137 0 0 1 0 0 Ribosome 1 0.500231643921091 0.999544739723206 0.999536712157818 hm5C_site_15059 DeepMRMD:0.999544739723206;iRNA_m5C:0.999536712157818 15060 chr19 2810273 2810273 1 + C T rs112329923 2810288 + 2810268 2810308 41 CTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCGGAGT CTGGGTACTCTGAGGCTCTGCCCCATCCCTGCAGGCGGAGT < 41bp 1 0.219663641126768 1 0.221096307039261 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THOP1 ENSG00000172009 UTR5 Human protein_coding chr19:2810288 chr19:2810273 . . 0 6 hm5C_associated_SNPs_13138 0 0 1 0 0 Ribosome 1 0.500184921716222 1 0.999630156567556 hm5C_site_15060 DeepMRMD:1;iRNA_m5C:0.999630156567556 15061 chr19 3119239 3119239 1 + C T rs4900 3119221 + 3119201 3119241 41 CAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCGGACCAT CAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCGGACTAT < 41bp 1 0.276784069337189 1 0.404965162277222 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNA11 ENSG00000088256 CDS Human protein_coding chr19:3119221 chr19:3119239 synonymous SNV . 0 39 hm5C_associated_SNPs_13139 1 0 1 0 1 Cytosol 1 0.500231638393731 1 0.999536723212539 hm5C_site_15061 DeepMRMD:1;iRNA_m5C:0.999536723212539 not specified not specified 15062 chr19 3121969 3121969 1 + G A rs369007259 3121953 + 3121933 3121973 41 TGCAGAGGCTGGGAAGGGTCCCCGGGCTGGAGCCACGGGGG TGCAGAGGCTGGGAAGGGTCCCCGGGCTGGAGCCACAGGGG < 41bp 1 0.658104578453842 1 0.494461119174957 experiment 0.683790843092317 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNA11 ENSG00000267688 ncRNA_exonic Human antisense chr19:3121953 chr19:3121969 . . 0 37 hm5C_associated_SNPs_13140 0 0 1 0 0 Cytosol 1 0.500231644286089 1 0.999536711427822 hm5C_site_15062 DeepMRMD:1;iRNA_m5C:0.999536711427822 15063 chr19 3121969 3121969 1 + G A rs369007259 3121955 + 3121935 3121975 41 CAGAGGCTGGGAAGGGTCCCCGGGCTGGAGCCACGGGGGCT CAGAGGCTGGGAAGGGTCCCCGGGCTGGAGCCACAGGGGCT < 41bp 1 0.677471465024299 1 0.665727853775024 experiment 0.645057069951401 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GNA11 ENSG00000267688 ncRNA_exonic Human antisense chr19:3121955 chr19:3121969 . . 0 35 hm5C_associated_SNPs_13142 0 0 1 0 0 Cytosol 1 0.500231643691965 0.668544292449952 0.99953671261607 hm5C_site_15063 DeepMRMD:0.668544292449952;iRNA_m5C:0.99953671261607 15064 chr19 3123574 3123574 1 + G A rs182892319 3123573 + 3123553 3123593 41 TGAGTGCCGACCACCTTCTCCGACCATGTTACGCCCGGGCG TGAGTGCCGACCACCTTCTCCAACCATGTTACGCCCGGGCG < 41bp 1 0.211862488501465 1 0.316134989261627 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNA11 ENSG00000088256 UTR3 Human protein_coding chr19:3123573 chr19:3123574 . . 0 22 hm5C_associated_SNPs_13143 0 0 1 0 0 Cytosol 1 0.500231643788929 1 0.999536712422142 hm5C_site_15064 DeepMRMD:1;iRNA_m5C:0.999536712422142 15065 chr19 3151780 3151780 1 + G A rs2230330 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCGCATACCCACCACTGGCATCAACGAGTACTG < 41bp 1 0.404371551782024 1 0.0413196086883545 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151780 nonsynonymous SNV 0.999 0 15 hm5C_associated_SNPs_13144 0 0 0 0 2 exosome 1 0.500104283790843 1 0.999791432418313 hm5C_site_15065 DeepMRMD:1;iRNA_m5C:0.999791432418313 15066 chr19 3207646 3207646 1 + A G rs2288949 3207638 + 3207618 3207658 41 TGTCCCCAGCACTTCAGCCTCCTCTACAAGACCGTCCAGAG TGTCCCCAGCACTTCAGCCTCCTCTACAGGACCGTCCAGAG < 41bp 1 0.0736350225729137 1 0.224492192268372 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3207638 chr19:3207646 nonsynonymous SNV 0.647 0 29 hm5C_associated_SNPs_13145 0 0 1 0 2 Ribosome 1 0.500231695496991 1 0.999536609006018 hm5C_site_15066 DeepMRMD:1;iRNA_m5C:0.999536609006018 15067 chr19 3462849 3462849 1 + C T rs8047 3462832 + 3462812 3462852 41 CCAGGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTCGGT CCAGGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTTGGT < 41bp 1 0.0602142435467889 1 0.194137901067734 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFIC ENSG00000141905 UTR3 Human protein_coding chr19:3462832 chr19:3462849 . . 0 38 hm5C_associated_SNPs_13146 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15067 DeepMRMD:1;iRNA_m5C:0.999536712157815 15068 chr19 3462849 3462849 1 + C T rs8047 3462833 + 3462813 3462853 41 CAGGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTCGGTG CAGGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTTGGTG < 41bp 1 0.0971790061975719 1 0.17969611287117 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFIC ENSG00000141905 UTR3 Human protein_coding chr19:3462833 chr19:3462849 . . 0 37 hm5C_associated_SNPs_13147 0 0 1 0 1 Ribosome 1 0.50023164359369 1 0.99953671281262 hm5C_site_15068 DeepMRMD:1;iRNA_m5C:0.99953671281262 15069 chr19 3462849 3462849 1 + C T rs8047 3462834 + 3462814 3462854 41 AGGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTCGGTGG AGGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTTGGTGG < 41bp 1 0.437761646906461 1 0.589706718921661 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFIC ENSG00000141905 UTR3 Human protein_coding chr19:3462834 chr19:3462849 . . 0 36 hm5C_associated_SNPs_13148 0 0 1 0 1 Ribosome 1 0.500231643921092 0.820586562156678 0.999536712157815 hm5C_site_15069 DeepMRMD:0.820586562156678;iRNA_m5C:0.999536712157815 15070 chr19 3462849 3462849 1 + C T rs8047 3462835 + 3462815 3462855 41 GGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTCGGTGGA GGGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTTGGTGGA < 41bp 1 0.145479752570451 1 0.688119232654572 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFIC ENSG00000141905 UTR3 Human protein_coding chr19:3462835 chr19:3462849 . . 0 35 hm5C_associated_SNPs_13149 0 0 1 0 1 Ribosome 1 0.500231643921283 0.623761534690856 0.999536712157435 hm5C_site_15070 DeepMRMD:0.623761534690856;iRNA_m5C:0.999536712157435 15071 chr19 3462849 3462849 1 + C T rs8047 3462836 + 3462816 3462856 41 GGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTCGGTGGAA GGGGCAGCACAGCCGGCCCCCGGCCCACGTTTTTGGTGGAA < 41bp 1 0.168845975941834 1 0.765260577201843 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFIC ENSG00000141905 UTR3 Human protein_coding chr19:3462836 chr19:3462849 . . 0 34 hm5C_associated_SNPs_13150 0 0 1 0 1 Ribosome 1 0.500231643921092 0.469478845596314 0.999536712157815 hm5C_site_15071 DeepMRMD:0.469478845596314;iRNA_m5C:0.999536712157815 15072 chr19 3466692 3466692 1 + T A rs73919194 3466691 + 3466671 3466711 41 TGCCCCACTCCTGAGCAAATCTGTCTTGCCAAGGAACTAGG TGCCCCACTCCTGAGCAAATCAGTCTTGCCAAGGAACTAGG < 41bp 1 0.207558790299259 1 0.127743184566498 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFIC ENSG00000141905 UTR3 Human protein_coding chr19:3466691 chr19:3466692 . . 0 22 hm5C_associated_SNPs_13151 0 0 1 0 0 Ribosome 1 0.500231643887814 1 0.999536712224372 hm5C_site_15072 DeepMRMD:1;iRNA_m5C:0.999536712224372 15073 chr19 3468962 3468962 1 + C T rs146638802 3468945 + 3468925 3468965 41 CCTGGGCAGACCCGCCGGCTCTCCCCCCACCCCACCCCGCC CCTGGGCAGACCCGCCGGCTCTCCCCCCACCCCACCCTGCC < 41bp 1 0.378401166277022 1 0.124447464942932 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NFIC ENSG00000141905 UTR3 Human protein_coding chr19:3468945 chr19:3468962 . . 0 38 hm5C_associated_SNPs_13152 0 0 1 0 0 Ribosome 1 0.50023130002332 1 0.999537399953361 hm5C_site_15073 DeepMRMD:1;iRNA_m5C:0.999537399953361 15074 chr19 3578653 3578653 1 + C T rs939209 3578644 + 3578624 3578664 41 CATCCTGCACCTTGGGGGCTCCAGCCCCCCTAAAATTAAAT CATCCTGCACCTTGGGGGCTCCAGCCCCCTTAAAATTAAAT < 41bp 1 0.0784078350575106 1 0.454580247402191 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HMG20B ENSG00000064961 UTR3 Human protein_coding chr19:3578644 chr19:3578653 . . 0 30 hm5C_associated_SNPs_13154 0 0 0 1 0 Cytosol 1 0.50023164392108 1 0.99953671215784 hm5C_site_15074 DeepMRMD:1;iRNA_m5C:0.99953671215784 15075 chr19 3762698 3762698 1 + C A rs13960 3762687 + 3762667 3762707 41 AACGTGCACTTGCAAGCTGCCCGCAATACGTCATGGCGACC AACGTGCACTTGCAAGCTGCCCGCAATACGTAATGGCGACC < 41bp 1 0.397602350737619 1 0.11757355928421 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIR1268A ENSG00000183617 UTR5 Human protein_coding chr19:3762687 chr19:3762698 . . 0 32 hm5C_associated_SNPs_13156 0 0 0 0 0 unknown 1 0.500231639055456 1 0.999536721889089 hm5C_site_15075 DeepMRMD:1;iRNA_m5C:0.999536721889089 15076 chr19 3762705 3762705 1 + A G rs148456964 3762687 + 3762667 3762707 41 AACGTGCACTTGCAAGCTGCCCGCAATACGTCATGGCGACC AACGTGCACTTGCAAGCTGCCCGCAATACGTCATGGCGGCC < 41bp 1 0.39770740848877 1 0.117643862962723 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL54 ENSG00000183617 CDS Human protein_coding chr19:3762687 chr19:3762705 nonsynonymous SNV 0.212 0 39 hm5C_associated_SNPs_13157 0 0 1 0 0 Ribosome 1 0.500231825322136 1 0.999536349355729 hm5C_site_15076 DeepMRMD:1;iRNA_m5C:0.999536349355729 15077 chr19 3762705 3762705 1 + A G rs148456964 3762698 + 3762678 3762718 41 GCAAGCTGCCCGCAATACGTCATGGCGACCAAACGCCTTTT GCAAGCTGCCCGCAATACGTCATGGCGGCCAAACGCCTTTT < 41bp 1 0.628028119897057 1 0.0831609070301056 experiment 0.743943760205887 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL54 ENSG00000183617 CDS Human protein_coding chr19:3762698 chr19:3762705 nonsynonymous SNV 0.212 0 28 hm5C_associated_SNPs_13158 0 0 1 0 0 Ribosome 1 0.500230534408884 1 0.999538931182231 hm5C_site_15077 DeepMRMD:1;iRNA_m5C:0.999538931182231 15078 chr19 3762708 3762708 1 + A C rs200937941 3762698 + 3762678 3762718 41 GCAAGCTGCCCGCAATACGTCATGGCGACCAAACGCCTTTT GCAAGCTGCCCGCAATACGTCATGGCGACCCAACGCCTTTT < 41bp 1 0.613583808124428 1 0.11714580655098 experiment 0.772832383751143 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL54 ENSG00000183617 CDS Human protein_coding chr19:3762698 chr19:3762708 nonsynonymous SNV 0.026 0 31 hm5C_associated_SNPs_13159 0 0 1 0 0 Ribosome 1 0.500231643875014 1 0.999536712249972 hm5C_site_15078 DeepMRMD:1;iRNA_m5C:0.999536712249972 15079 chr19 4222726 4222726 1 + C T rs547203239 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCAGCCGGCTGCCCTCGCCACC < 41bp 1 0.286853004900377 1 0.204042494297028 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222726 synonymous SNV . 0 29 hm5C_associated_SNPs_13160 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15079 DeepMRMD:1;iRNA_m5C:0.999536712157815 15080 chr19 4222727 4222727 1 + G A rs149730870 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCAGCCGGCCACCCTCGCCACC < 41bp 1 0.310047155863269 1 0.425137668848038 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222727 nonsynonymous SNV 0.000 0 30 hm5C_associated_SNPs_13161 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15080 DeepMRMD:1;iRNA_m5C:0.999536712157815 15081 chr19 4402720 4402720 1 + C G rs532080132 4402714 + 4402694 4402734 41 CAGCGGCCGCCTGAGGGGAGCCCGCGCCTCCGCCGCCTGAG CAGCGGCCGCCTGAGGGGAGCCCGCGGCTCCGCCGCCTGAG < 41bp 1 0.439329106858918 1 0.316487520933151 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1A ENSG00000167670 UTR5 Human protein_coding chr19:4402714 chr19:4402720 . . 0 27 hm5C_associated_SNPs_13163 0 0 1 0 1 Nucleus 1 0.500231643920981 1 0.999536712158039 hm5C_site_15081 DeepMRMD:1;iRNA_m5C:0.999536712158039 15082 chr19 4402720 4402720 1 + C G rs532080132 4402715 + 4402695 4402735 41 AGCGGCCGCCTGAGGGGAGCCCGCGCCTCCGCCGCCTGAGA AGCGGCCGCCTGAGGGGAGCCCGCGGCTCCGCCGCCTGAGA < 41bp 1 0.594641548433105 1 0.818751335144043 experiment 0.81071690313379 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1A ENSG00000167670 UTR5 Human protein_coding chr19:4402715 chr19:4402720 . . 0 26 hm5C_associated_SNPs_13164 0 0 1 0 1 Nucleus 1 0.500231646337582 0.362497329711914 0.999536707324835 hm5C_site_15082 DeepMRMD:0.362497329711914;iRNA_m5C:0.999536707324835 15083 chr19 4402720 4402720 1 + C G rs532080132 4402718 + 4402698 4402738 41 GGCCGCCTGAGGGGAGCCCGCGCCTCCGCCGCCTGAGAGGA GGCCGCCTGAGGGGAGCCCGCGGCTCCGCCGCCTGAGAGGA < 41bp 1 0.687524481727427 1 0.645641922950745 experiment 0.624951036545147 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1A ENSG00000167670 UTR5 Human protein_coding chr19:4402718 chr19:4402720 . . 0 23 hm5C_associated_SNPs_13165 0 0 1 0 1 Nucleus 1 0.500231643920789 0.70871615409851 0.999536712158423 hm5C_site_15083 DeepMRMD:0.70871615409851;iRNA_m5C:0.999536712158423 15084 chr19 4402720 4402720 1 + C G rs532080132 4402721 + 4402701 4402741 41 CGCCTGAGGGGAGCCCGCGCCTCCGCCGCCTGAGAGGAGGT CGCCTGAGGGGAGCCCGCGGCTCCGCCGCCTGAGAGGAGGT < 41bp 1 0.56459221179024 1 0.707516372203827 experiment 0.87081557641952 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1A ENSG00000167670 UTR5 Human protein_coding chr19:4402721 chr19:4402720 . . 0 20 hm5C_associated_SNPs_13166 0 0 1 0 1 Nucleus 1 0.500231644696192 0.584967255592346 0.999536710607615 hm5C_site_15084 DeepMRMD:0.584967255592346;iRNA_m5C:0.999536710607615 15085 chr19 4409075 4409075 1 + C T rs202229686 4409086 + 4409066 4409106 41 ACTTGTCAACGGGAAGGGTCCCTTAGATAACTTTTTAAGAA ACTTGTCAATGGGAAGGGTCCCTTAGATAACTTTTTAAGAA < 41bp 1 0.0905905874263381 1 0.0973202586174011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4409086 chr19:4409075 synonymous SNV . 0 10 hm5C_associated_SNPs_13167 0 0 1 0 0 Nucleus 1 0.500231643921094 1 0.999536712157813 hm5C_site_15085 DeepMRMD:1;iRNA_m5C:0.999536712157813 15086 chr19 4442244 4442244 1 + T C rs150686707 4442256 + 4442236 4442276 41 GTCCAGATTGGTGCTGAAGACATGGACGGCTTCCAGGCAGA GTCCAGATCGGTGCTGAAGACATGGACGGCTTCCAGGCAGA < 41bp 1 0.595342778934802 1 0.368693470954895 experiment 0.809314442130396 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442256 chr19:4442244 synonymous SNV . 0 9 hm5C_associated_SNPs_13169 0 0 1 0 2 Nucleus 1 0.500231647545774 1 0.999536704908453 hm5C_site_15086 DeepMRMD:1;iRNA_m5C:0.999536704908453 15087 chr19 4442244 4442244 1 + T C rs150686707 4442262 + 4442242 4442282 41 ATTGGTGCTGAAGACATGGACGGCTTCCAGGCAGACACGGA ATCGGTGCTGAAGACATGGACGGCTTCCAGGCAGACACGGA < 41bp 1 0.384969990809604 1 0.14140722155571 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442262 chr19:4442244 synonymous SNV . 0 3 hm5C_associated_SNPs_13170 0 0 1 0 2 Nucleus 1 0.500232370171132 1 0.999535259657737 hm5C_site_15087 DeepMRMD:1;iRNA_m5C:0.999535259657737 15088 chr19 4442280 4442280 1 + G A rs140147311 4442262 + 4442242 4442282 41 ATTGGTGCTGAAGACATGGACGGCTTCCAGGCAGACACGGA ATTGGTGCTGAAGACATGGACGGCTTCCAGGCAGACACAGA < 41bp 1 0.396915180967981 1 0.10079562664032 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442262 chr19:4442280 synonymous SNV . 0 39 hm5C_associated_SNPs_13171 0 0 1 0 2 Nucleus 1 0.500231967556432 1 0.999536064887135 hm5C_site_15088 DeepMRMD:1;iRNA_m5C:0.999536064887135 15089 chr19 4442280 4442280 1 + G A rs140147311 4442265 + 4442245 4442285 41 GGTGCTGAAGACATGGACGGCTTCCAGGCAGACACGGAGGA GGTGCTGAAGACATGGACGGCTTCCAGGCAGACACAGAGGA < 41bp 1 0.0621291307090623 1 0.162123322486877 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442265 chr19:4442280 synonymous SNV . 0 36 hm5C_associated_SNPs_13172 0 0 1 0 2 Nucleus 1 0.500231644019814 1 0.999536711960372 hm5C_site_15089 DeepMRMD:1;iRNA_m5C:0.999536711960372 15090 chr19 4442280 4442280 1 + G A rs140147311 4442277 + 4442257 4442297 41 ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGA ATGGACGGCTTCCAGGCAGACACAGAGGAGGAGGAAGAGGA < 41bp 1 0.426780642019351 1 0.197217524051666 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442277 chr19:4442280 synonymous SNV . 0 24 hm5C_associated_SNPs_13173 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_15090 DeepMRMD:1;iRNA_m5C:0.999536712157816 15091 chr19 4442280 4442280 1 + G A rs140147311 4442279 + 4442259 4442299 41 GGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGAGG GGACGGCTTCCAGGCAGACACAGAGGAGGAGGAAGAGGAGG < 41bp 1 0.694374411562716 1 0.598636388778687 experiment 0.611251176874567 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442279 chr19:4442280 synonymous SNV . 0 22 hm5C_associated_SNPs_13174 0 0 1 0 2 Nucleus 1 0.500231643921092 0.802727222442626 0.999536712157815 hm5C_site_15091 DeepMRMD:0.802727222442626;iRNA_m5C:0.999536712157815 15092 chr19 4472270 4472270 1 + C A rs575373065 4472284 + 4472264 4472304 41 GCCTCCCGCTGCCGCCGCCGCCGCCGCCGCAGCCGCTACCG GCCTCCAGCTGCCGCCGCCGCCGCCGCCGCAGCCGCTACCG < 41bp 1 0.525125529656031 1 0.223979502916336 experiment 0.949748940687938 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HDGFL2 ENSG00000167674;ENSG00000267011 upstream Human other chr19:4472284 chr19:4472270 . . 0 7 hm5C_associated_SNPs_13175 0 0 0 0 0 unknown 1 0.500231643599579 1 0.999536712800843 hm5C_site_15092 DeepMRMD:1;iRNA_m5C:0.999536712800843 15093 chr19 4472281 4472281 1 + C A rs539210622 4472284 + 4472264 4472304 41 GCCTCCCGCTGCCGCCGCCGCCGCCGCCGCAGCCGCTACCG GCCTCCCGCTGCCGCCGACGCCGCCGCCGCAGCCGCTACCG < 41bp 1 0.559169336810518 1 0.294329464435577 experiment 0.881661326378963 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HDGFL2 ENSG00000167674;ENSG00000267011 upstream Human other chr19:4472284 chr19:4472281 . . 0 18 hm5C_associated_SNPs_13178 0 0 0 0 0 unknown 1 0.500231644358382 1 0.999536711283236 hm5C_site_15093 DeepMRMD:1;iRNA_m5C:0.999536711283236 15094 chr19 4475340 4475340 1 + A T rs193125218 4475343 + 4475323 4475363 41 ATCTTTTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTC ATCTTTTTCTTTGGCACTCACGAAACGTAAGTGTCCCCTTC < 41bp 1 0.547325574264225 1 0.426686823368073 experiment 0.90534885147155 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475343 chr19:4475340 synonymous SNV . 0 18 hm5C_associated_SNPs_13181 0 0 1 0 2 unknown 1 0.500231643921181 1 0.999536712157638 hm5C_site_15094 DeepMRMD:1;iRNA_m5C:0.999536712157638 15095 chr19 4475340 4475340 1 + A T rs193125218 4475348 + 4475328 4475368 41 TTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTCTGGGG TTTCTTTGGCACTCACGAAACGTAAGTGTCCCCTTCTGGGG < 41bp 1 0.477004463500332 1 0.18256351351738 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475348 chr19:4475340 synonymous SNV . 0 13 hm5C_associated_SNPs_13182 0 0 1 0 2 unknown 1 0.50023146240646 1 0.999537075187081 hm5C_site_15095 DeepMRMD:1;iRNA_m5C:0.999537075187081 15096 chr19 4639545 4639545 1 + C T rs9917070 4639536 + 4639516 4639556 41 CCGCCCCGCCCCGGCCCCGGCCCCGGCTCCGGCGCTGCTCC CCGCCCCGCCCCGGCCCCGGCCCCGGCTCTGGCGCTGCTCC < 41bp 1 0.511683789171103 1 0.412820905447006 experiment 0.976632421657793 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFAIP8L1 ENSG00000185361 UTR5 Human protein_coding chr19:4639536 chr19:4639545 . . 0 30 hm5C_associated_SNPs_13185 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15096 DeepMRMD:1;iRNA_m5C:0.999536712157815 15097 chr19 4639545 4639545 1 + C T rs9917070 4639538 + 4639518 4639558 41 GCCCCGCCCCGGCCCCGGCCCCGGCTCCGGCGCTGCTCCCA GCCCCGCCCCGGCCCCGGCCCCGGCTCTGGCGCTGCTCCCA < 41bp 1 0.616346062003018 1 0.714073300361633 experiment 0.767307875993964 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TNFAIP8L1 ENSG00000185361 UTR5 Human protein_coding chr19:4639538 chr19:4639545 . . 0 28 hm5C_associated_SNPs_13186 0 0 0 0 1 Cytosol 1 0.500231643921092 0.571853399276734 0.999536712157815 hm5C_site_15097 DeepMRMD:0.571853399276734;iRNA_m5C:0.999536712157815 15098 chr19 4724141 4724141 1 + C T rs553016069 4724121 + 4724101 4724141 41 TAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTCGATTC TAGCATAGCTGCCTTCCAAGCAGTTGACCCGGGTTCGATTT < 41bp 1 0.405665689482355 1 0.717421233654022 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DPP9 ENSG00000142002 intronic Human protein_coding chr19:4724121 chr19:4724141 . . 0 41 hm5C_associated_SNPs_13187 0 0 1 0 0 Cytosol 1 0.50023164393362 0.565157532691956 0.999536712132759 hm5C_site_15098 DeepMRMD:0.565157532691956;iRNA_m5C:0.999536712132759 15099 chr19 4724141 4724141 1 + C T rs553016069 4724129 + 4724109 4724149 41 CTGCCTTCCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAA CTGCCTTCCAAGCAGTTGACCCGGGTTCGATTTCCGGCCAA < 41bp 1 0.67464472147128 1 0.672698616981506 experiment 0.65071055705744 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DPP9 ENSG00000142002 intronic Human protein_coding chr19:4724129 chr19:4724141 . . 0 33 hm5C_associated_SNPs_13188 0 0 1 0 0 Cytosol 1 0.500231645461231 0.654602766036988 0.999536709077538 hm5C_site_15099 DeepMRMD:0.654602766036988;iRNA_m5C:0.999536709077538 15100 chr19 4724141 4724141 1 + C T rs553016069 4724130 + 4724110 4724150 41 TGCCTTCCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAAC TGCCTTCCAAGCAGTTGACCCGGGTTCGATTTCCGGCCAAC < 41bp 1 0.589514154977509 1 0.470156311988831 experiment 0.820971690044982 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DPP9 ENSG00000142002 intronic Human protein_coding chr19:4724130 chr19:4724141 . . 0 32 hm5C_associated_SNPs_13189 0 0 1 0 0 Cytosol 1 0.500231643921075 1 0.999536712157849 hm5C_site_15100 DeepMRMD:1;iRNA_m5C:0.999536712157849 15101 chr19 4724141 4724141 1 + C T rs553016069 4724136 + 4724116 4724156 41 CCAAGCAGTTGACCCGGGTTCGATTCCCGGCCAACGCATGC CCAAGCAGTTGACCCGGGTTCGATTTCCGGCCAACGCATGC < 41bp 1 0.25431249535481 1 0.086014062166214 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control DPP9 ENSG00000142002 intronic Human protein_coding chr19:4724136 chr19:4724141 . . 0 26 hm5C_associated_SNPs_13190 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15101 DeepMRMD:1;iRNA_m5C:0.999536712157815 15102 chr19 4724141 4724141 1 + C T rs553016069 4724142 + 4724122 4724162 41 AGTTGACCCGGGTTCGATTCCCGGCCAACGCATGCGGTACC AGTTGACCCGGGTTCGATTTCCGGCCAACGCATGCGGTACC < 41bp 1 0.402798935682694 1 0.917587578296661 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target DPP9 ENSG00000142002 intronic Human protein_coding chr19:4724142 chr19:4724141 . . 0 20 hm5C_associated_SNPs_13191 0 0 1 0 0 Cytosol 1 0.500231643716566 0.164824843406678 0.999536712566869 hm5C_site_15102 DeepMRMD:0.164824843406678;iRNA_m5C:0.999536712566869 15103 chr19 4724141 4724141 1 + C T rs553016069 4724143 + 4724123 4724163 41 GTTGACCCGGGTTCGATTCCCGGCCAACGCATGCGGTACCA GTTGACCCGGGTTCGATTTCCGGCCAACGCATGCGGTACCA < 41bp 1 0.55973920776553 1 0.47006568312645 experiment 0.88052158446894 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target DPP9 ENSG00000142002 intronic Human protein_coding chr19:4724143 chr19:4724141 . . 0 19 hm5C_associated_SNPs_13192 0 0 1 0 0 Cytosol 1 0.50017278775116 1 0.999654424497681 hm5C_site_15103 DeepMRMD:1;iRNA_m5C:0.999654424497681 15104 chr19 4724141 4724141 1 + C T rs553016069 4724146 + 4724126 4724166 41 GACCCGGGTTCGATTCCCGGCCAACGCATGCGGTACCACTT GACCCGGGTTCGATTTCCGGCCAACGCATGCGGTACCACTT < 41bp 1 0.0431758492017965 1 0.134168446063995 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target DPP9 ENSG00000142002 intronic Human protein_coding chr19:4724146 chr19:4724141 . . 0 16 hm5C_associated_SNPs_13193 0 0 1 0 0 Cytosol 1 0.500231541410418 1 0.999536917179165 hm5C_site_15104 DeepMRMD:1;iRNA_m5C:0.999536917179165 15105 chr19 4724141 4724141 1 + C T rs553016069 4724147 + 4724127 4724167 41 ACCCGGGTTCGATTCCCGGCCAACGCATGCGGTACCACTTT ACCCGGGTTCGATTTCCGGCCAACGCATGCGGTACCACTTT < 41bp 1 0.287229080377169 1 0.146640002727509 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target DPP9 ENSG00000142002 intronic Human protein_coding chr19:4724147 chr19:4724141 . . 0 15 hm5C_associated_SNPs_13194 0 0 1 0 0 Cytosol 1 0.500231647304168 1 0.999536705391664 hm5C_site_15105 DeepMRMD:1;iRNA_m5C:0.999536705391664 15106 chr19 4724141 4724141 1 + C T rs553016069 4724150 + 4724130 4724170 41 CGGGTTCGATTCCCGGCCAACGCATGCGGTACCACTTTTGC CGGGTTCGATTTCCGGCCAACGCATGCGGTACCACTTTTGC < 41bp 1 0.186927191096831 1 0.225072026252747 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target DPP9 ENSG00000142002 intronic Human protein_coding chr19:4724150 chr19:4724141 . . 0 12 hm5C_associated_SNPs_13195 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15106 DeepMRMD:1;iRNA_m5C:0.999536712157815 15107 chr19 4954448 4954448 1 + G A rs17878253 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGAGGCTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.228539874234431 1 0.464905232191086 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954448 . . 0 13 hm5C_associated_SNPs_13196 0 0 0 0 2 chromatin 1 0.500231624382769 1 0.999536751234461 hm5C_site_15107 DeepMRMD:1;iRNA_m5C:0.999536751234461 15108 chr19 4954448 4954448 1 + G A rs17878253 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGAGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.532411306429006 1 0.395684033632278 experiment 0.935177387141989 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954448 . . 0 9 hm5C_associated_SNPs_13197 0 0 0 0 2 chromatin 1 0.50023164377298 1 0.999536712454041 hm5C_site_15108 DeepMRMD:1;iRNA_m5C:0.999536712454041 15109 chr19 4954450 4954450 1 + G A rs201255730 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGACTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.296207960422515 1 0.551333487033844 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954450 . 0.007 0 15 hm5C_associated_SNPs_13198 0 0 0 0 2 chromatin 1 0.500231644951565 0.897333025932312 0.99953671009687 hm5C_site_15109 DeepMRMD:0.897333025932312;iRNA_m5C:0.99953671009687 15110 chr19 4954450 4954450 1 + G A rs201255730 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGACTTCGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.56266109879721 1 0.473664164543152 experiment 0.87467780240558 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954450 . 0.007 0 11 hm5C_associated_SNPs_13199 0 0 0 0 2 chromatin 1 0.500231449722817 1 0.999537100554366 hm5C_site_15110 DeepMRMD:1;iRNA_m5C:0.999537100554366 15111 chr19 4954454 4954454 1 + C T rs2247238 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTTGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.286484043660557 1 0.40823820233345 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954454 . . 0 19 hm5C_associated_SNPs_13200 0 0 0 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_15111 DeepMRMD:1;iRNA_m5C:0.999536712157815 15112 chr19 4954454 4954454 1 + C T rs2247238 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTTGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.576946396569887 1 0.532072484493256 experiment 0.846107206860226 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954454 . . 0 15 hm5C_associated_SNPs_13201 0 0 0 0 2 chromatin 1 0.500231644160947 0.935855031013488 0.999536711678106 hm5C_site_15112 DeepMRMD:0.935855031013488;iRNA_m5C:0.999536711678106 15113 chr19 4954455 4954455 1 + G A rs2307209 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTCACGTCCCCCAGGACGGGCAAGG < 41bp 1 0.320151305684673 1 0.446729063987732 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954455 . 0.000 0 20 hm5C_associated_SNPs_13202 0 0 0 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_15113 DeepMRMD:1;iRNA_m5C:0.999536712157815 15114 chr19 4954455 4954455 1 + G A rs2307209 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTCACGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.568857608953638 1 0.496842890977859 experiment 0.862284782092724 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954455 . 0.000 0 16 hm5C_associated_SNPs_13203 0 0 0 0 2 chromatin 1 0.500231644161098 1 0.999536711677804 hm5C_site_15114 DeepMRMD:1;iRNA_m5C:0.999536711677804 15115 chr19 4954456 4954456 1 + C T rs374424470 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTCGTGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.642347912731724 1 0.354945659637451 experiment 0.715304174536551 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954456 . 0.000 0 17 hm5C_associated_SNPs_13204 0 0 0 0 2 chromatin 1 0.500231644994845 1 0.999536710010309 hm5C_site_15115 DeepMRMD:1;iRNA_m5C:0.999536710010309 15116 chr19 5135403 5135403 1 + G A rs558725727 5135388 + 5135368 5135408 41 GAGGCACCCATAGCCTCCCTCGGAAAGGGCTGCCCGGCCAC GAGGCACCCATAGCCTCCCTCGGAAAGGGCTGCCCAGCCAC < 41bp 1 0.650465308296163 1 0.955124139785767 experiment 0.699069383407673 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5135388 chr19:5135403 synonymous SNV . 0 36 hm5C_associated_SNPs_13206 0 0 1 0 1 Cytosol 1 0.500231643911474 0.0897517204284659 0.999536712177052 hm5C_site_15116 DeepMRMD:0.0897517204284659;iRNA_m5C:0.999536712177052 15117 chr19 5623138 5623138 1 + C A rs143563020 5623123 + 5623103 5623143 41 GCGCGCTGGGGCGACTGGAGCGGTTCCCTCGCAGGCGGCGC GCGCGCTGGGGCGACTGGAGCGGTTCCCTCGCAGGAGGCGC < 41bp 1 0.406245882616883 1 0.371853888034821 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SAFB ENSG00000160633 UTR5 Human protein_coding chr19:5623123 chr19:5623138 . . 0 36 hm5C_associated_SNPs_13207 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15117 DeepMRMD:1;iRNA_m5C:0.999536712157815 15118 chr19 5690302 5690302 1 + C T rs532295847 5690310 + 5690290 5690330 41 TCCGCGCGGCGCCAGCCCTTCCGCCACGGCCGTCTCTGGAG TCCGCGCGGCGCTAGCCCTTCCGCCACGGCCGTCTCTGGAG < 41bp 1 0.276772809601521 1 0.533714652061462 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690310 chr19:5690302 . . 0 13 hm5C_associated_SNPs_13208 0 0 1 0 1 Ribosome 1 0.500231643921092 0.932570695877076 0.999536712157815 hm5C_site_15118 DeepMRMD:0.932570695877076;iRNA_m5C:0.999536712157815 15119 chr19 5690304 5690304 1 + G A rs3810220 5690310 + 5690290 5690330 41 TCCGCGCGGCGCCAGCCCTTCCGCCACGGCCGTCTCTGGAG TCCGCGCGGCGCCAACCCTTCCGCCACGGCCGTCTCTGGAG < 41bp 1 0.286615175026743 1 0.441479861736298 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690310 chr19:5690304 . . 0 15 hm5C_associated_SNPs_13209 0 0 1 0 1 Ribosome 1 0.500231643921087 1 0.999536712157826 hm5C_site_15119 DeepMRMD:1;iRNA_m5C:0.999536712157826 15120 chr19 5690314 5690314 1 + C G rs10419745 5690310 + 5690290 5690330 41 TCCGCGCGGCGCCAGCCCTTCCGCCACGGCCGTCTCTGGAG TCCGCGCGGCGCCAGCCCTTCCGCGACGGCCGTCTCTGGAG < 41bp 1 0.592508365149998 1 0.437264114618301 experiment 0.814983269700003 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690310 chr19:5690314 . . 0 25 hm5C_associated_SNPs_13210 0 0 1 0 1 Ribosome 1 0.500231643784993 1 0.999536712430015 hm5C_site_15120 DeepMRMD:1;iRNA_m5C:0.999536712430015 15121 chr19 5690494 5690494 1 + C A rs1049958 5690507 + 5690487 5690527 41 TCCGCCCCTTCTCCCCGTCGCTGTCCGCAGCCATGGCCCTA TCCGCCCATTCTCCCCGTCGCTGTCCGCAGCCATGGCCCTA < 41bp 1 0.402908886197648 1 0.0339812934398651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690507 chr19:5690494 . . 0 8 hm5C_associated_SNPs_13211 0 0 1 0 0 Ribosome 1 0.500231701176561 1 0.999536597646878 hm5C_site_15121 DeepMRMD:1;iRNA_m5C:0.999536597646878 15122 chr19 5690494 5690494 1 + C A rs1049958 5690511 + 5690491 5690531 41 CCCCTTCTCCCCGTCGCTGTCCGCAGCCATGGCCCTACGCT CCCATTCTCCCCGTCGCTGTCCGCAGCCATGGCCCTACGCT < 41bp 1 0.627445726739877 1 0.456348180770874 experiment 0.745108546520245 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690511 chr19:5690494 . . 0 4 hm5C_associated_SNPs_13212 0 0 1 0 0 Ribosome 1 0.500231644913055 1 0.999536710173891 hm5C_site_15122 DeepMRMD:1;iRNA_m5C:0.999536710173891 15123 chr19 5690501 5690501 1 + C G rs548116652 5690507 + 5690487 5690527 41 TCCGCCCCTTCTCCCCGTCGCTGTCCGCAGCCATGGCCCTA TCCGCCCCTTCTCCGCGTCGCTGTCCGCAGCCATGGCCCTA < 41bp 1 0.383573448323837 1 0.039300799369812 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690507 chr19:5690501 . . 0 15 hm5C_associated_SNPs_13213 0 0 1 0 0 Ribosome 1 0.500226617295716 1 0.999546765408568 hm5C_site_15123 DeepMRMD:1;iRNA_m5C:0.999546765408568 15124 chr19 5690501 5690501 1 + C G rs548116652 5690511 + 5690491 5690531 41 CCCCTTCTCCCCGTCGCTGTCCGCAGCCATGGCCCTACGCT CCCCTTCTCCGCGTCGCTGTCCGCAGCCATGGCCCTACGCT < 41bp 1 0.629108156991639 1 0.437980532646179 experiment 0.741783686016721 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690511 chr19:5690501 . . 0 11 hm5C_associated_SNPs_13214 0 0 1 0 0 Ribosome 1 0.499378058200657 1 1 hm5C_site_15124 DeepMRMD:1;iRNA_m5C:1 15125 chr19 5690509 5690509 1 + G C rs201910502 5690507 + 5690487 5690527 41 TCCGCCCCTTCTCCCCGTCGCTGTCCGCAGCCATGGCCCTA TCCGCCCCTTCTCCCCGTCGCTCTCCGCAGCCATGGCCCTA < 41bp 1 0.312217615168173 1 0.022092193365097 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690507 chr19:5690509 . . 0 23 hm5C_associated_SNPs_13215 0 0 1 0 0 Ribosome 1 0.500231346996495 1 0.999537306007009 hm5C_site_15125 DeepMRMD:1;iRNA_m5C:0.999537306007009 15126 chr19 5690509 5690509 1 + G C rs201910502 5690511 + 5690491 5690531 41 CCCCTTCTCCCCGTCGCTGTCCGCAGCCATGGCCCTACGCT CCCCTTCTCCCCGTCGCTCTCCGCAGCCATGGCCCTACGCT < 41bp 1 0.660911129114254 1 0.405080229043961 experiment 0.678177741771493 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL36 ENSG00000130255 UTR5 Human protein_coding chr19:5690511 chr19:5690509 . . 0 19 hm5C_associated_SNPs_13216 0 0 1 0 0 Ribosome 1 0.500231643925547 1 0.999536712148906 hm5C_site_15126 DeepMRMD:1;iRNA_m5C:0.999536712148906 15127 chr19 5691349 5691349 1 + A G rs201113121 5691353 + 5691333 5691373 41 CTGACCAAACACACCAAGTTCGTGCGGGACATGATTCGGGA CTGACCAAACACACCAGGTTCGTGCGGGACATGATTCGGGA < 41bp 1 0.332340728933054 1 0.208826720714569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691353 chr19:5691349 nonsynonymous SNV 0.998 0 17 hm5C_associated_SNPs_13217 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_15127 DeepMRMD:1;iRNA_m5C:0.999536712157815 15128 chr19 5691641 5691641 1 + C G rs201621814 5691640 + 5691620 5691660 41 CAAGAAAGACTGAGCCCCTCCCCTGCCCTCTCCCTGAAATA CAAGAAAGACTGAGCCCCTCCGCTGCCCTCTCCCTGAAATA < 41bp 1 0.329942344270164 1 0.357696801424026 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL36 ENSG00000130255 UTR3 Human protein_coding chr19:5691640 chr19:5691641 . . 0 22 hm5C_associated_SNPs_13218 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15128 DeepMRMD:1;iRNA_m5C:0.999536712157815 15129 chr19 5691641 5691641 1 + C G rs201621814 5691642 + 5691622 5691662 41 AGAAAGACTGAGCCCCTCCCCTGCCCTCTCCCTGAAATAAA AGAAAGACTGAGCCCCTCCGCTGCCCTCTCCCTGAAATAAA < 41bp 1 0.44181736344783 1 0.30493700504303 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL36 ENSG00000130255 UTR3 Human protein_coding chr19:5691642 chr19:5691641 . . 0 20 hm5C_associated_SNPs_13219 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15129 DeepMRMD:1;iRNA_m5C:0.999536712157815 15130 chr19 5828125 5828125 1 + G T rs376877016 5828115 + 5828095 5828135 41 GCCTACGAGGACGAGGTGTCCTTCCTGGACGCGCACAGCCG GCCTACGAGGACGAGGTGTCCTTCCTGGACTCGCACAGCCG < 41bp 1 0.30686550560577 1 0.0720130503177643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NRTN ENSG00000171119 CDS Human protein_coding chr19:5828115 chr19:5828125 nonsynonymous SNV 0.996 1 31 hm5C_associated_SNPs_13220 0 0 0 0 0 Ribosome 1 0.50023164376459 1 0.999536712470821 hm5C_site_15130 DeepMRMD:1;iRNA_m5C:0.999536712470821 15131 chr19 5915392 5915392 1 + T C rs10423464 5915391 + 5915371 5915411 41 TCCCCACCCCTGCCGGAGACCTCCCTTCCCTGGGCCCCTTC TCCCCACCCCTGCCGGAGACCCCCCTTCCCTGGGCCCCTTC < 41bp 1 0.23710073895704 1 0.284177511930466 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPS ENSG00000105519 UTR3 Human protein_coding chr19:5915391 chr19:5915392 . . 0 22 hm5C_associated_SNPs_13221 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15131 DeepMRMD:1;iRNA_m5C:0.999536712157815 15132 chr19 7528734 7528734 1 + A G rs2287918 7528733 + 7528713 7528753 41 TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC TCCAGAGCCTGATCTGCAGGCGGCTGGGCAGCGCCAACGGC < 41bp 1 0.408565275170329 1 0.444900244474411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528733 chr19:7528734 nonsynonymous SNV 0.517 0 22 hm5C_associated_SNPs_13224 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15132 DeepMRMD:1;iRNA_m5C:0.999536712157815 15133 chr19 7528744 7528744 1 + C T rs138113892 7528733 + 7528713 7528753 41 TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGTGCCAACGGC < 41bp 1 0.39179098458561 1 0.515252530574799 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528733 chr19:7528744 synonymous SNV . 0 32 hm5C_associated_SNPs_13225 0 0 0 0 1 Cytosol 1 0.500231643921092 0.969494938850402 0.999536712157815 hm5C_site_15133 DeepMRMD:0.969494938850402;iRNA_m5C:0.999536712157815 15134 chr19 7598726 7598726 1 + C A rs143176884 7598730 + 7598710 7598750 41 CCCTGGACTGCAGAGACCCCCGCCCCCGACCCCGCTTATTT CCCTGGACTGCAGAGAACCCCGCCCCCGACCCCGCTTATTT < 41bp 1 0.364824353846499 1 0.335457921028137 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7598730 chr19:7598726 unknown . 0 17 hm5C_associated_SNPs_13226 0 0 1 0 1 chromatin 1 0.500231643921057 1 0.999536712157886 hm5C_site_15134 DeepMRMD:1;iRNA_m5C:0.999536712157886 15135 chr19 7598726 7598726 1 + C A rs143176884 7598732 + 7598712 7598752 41 CTGGACTGCAGAGACCCCCGCCCCCGACCCCGCTTATTTAT CTGGACTGCAGAGAACCCCGCCCCCGACCCCGCTTATTTAT < 41bp 1 0.12950325633578 1 0.0971560776233673 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7598732 chr19:7598726 unknown . 0 15 hm5C_associated_SNPs_13227 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_15135 DeepMRMD:1;iRNA_m5C:0.999536712157816 15136 chr19 7626456 7626456 1 + G A rs561526950 7626465 + 7626445 7626485 41 CTGAGGACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCT CTGAGGACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCT < 41bp 1 0.392248991184231 1 0.0699202716350555 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626465 chr19:7626456 . . 0 12 hm5C_associated_SNPs_13228 1 0 0 1 1 Ribosome 1 0.500231643924815 1 0.999536712150369 hm5C_site_15136 DeepMRMD:1;iRNA_m5C:0.999536712150369 Spastic Paraplegia, Recessive Spastic Paraplegia, Recessive 15137 chr19 7626456 7626456 1 + G A rs561526950 7626467 + 7626447 7626487 41 GAGGACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGG GAGGACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGG < 41bp 1 0.278347963693536 1 0.0767365396022797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626467 chr19:7626456 . . 0 10 hm5C_associated_SNPs_13229 1 0 0 1 1 Ribosome 1 0.500231643921047 1 0.999536712157907 hm5C_site_15137 DeepMRMD:1;iRNA_m5C:0.999536712157907 Spastic Paraplegia, Recessive Spastic Paraplegia, Recessive 15138 chr19 7626456 7626456 1 + G A rs561526950 7626468 + 7626448 7626488 41 AGGACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGA AGGACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGA < 41bp 1 0.180482571140545 1 0.0827329754829407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626468 chr19:7626456 . . 0 9 hm5C_associated_SNPs_13230 1 0 0 1 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_15138 DeepMRMD:1;iRNA_m5C:0.999536712157816 Spastic Paraplegia, Recessive Spastic Paraplegia, Recessive 15139 chr19 7626456 7626456 1 + G A rs561526950 7626469 + 7626449 7626489 41 GGACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGAC GGACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGAC < 41bp 1 0.10705820722741 1 0.234183758497238 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626469 chr19:7626456 . . 0 8 hm5C_associated_SNPs_13231 1 0 0 1 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_15139 DeepMRMD:1;iRNA_m5C:0.999536712157816 Spastic Paraplegia, Recessive Spastic Paraplegia, Recessive 15140 chr19 7626456 7626456 1 + G A rs561526950 7626470 + 7626450 7626490 41 GACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGACT GACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGACT < 41bp 1 0.0696652263829412 1 0.370857298374176 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626470 chr19:7626456 . . 0 7 hm5C_associated_SNPs_13232 1 0 0 1 1 Ribosome 1 0.500231643921085 1 0.99953671215783 hm5C_site_15140 DeepMRMD:1;iRNA_m5C:0.99953671215783 Spastic Paraplegia, Recessive Spastic Paraplegia, Recessive 15141 chr19 7626456 7626456 1 + G A rs561526950 7626471 + 7626451 7626491 41 ACCTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTG ACCTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTG < 41bp 1 0.432188403314111 1 0.700345516204834 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626471 chr19:7626456 . . 0 6 hm5C_associated_SNPs_13233 1 0 0 1 1 Ribosome 1 0.500231643919342 0.599308967590332 0.999536712161317 hm5C_site_15141 DeepMRMD:0.599308967590332;iRNA_m5C:0.999536712161317 Spastic Paraplegia, Recessive Spastic Paraplegia, Recessive 15142 chr19 7626456 7626456 1 + G A rs561526950 7626473 + 7626453 7626493 41 CTCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTGGG CTCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTGGG < 41bp 1 0.1055462861284 1 0.549901723861694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626473 chr19:7626456 . . 0 4 hm5C_associated_SNPs_13234 1 0 0 1 1 Ribosome 1 0.500231643919465 0.900196552276612 0.999536712161071 hm5C_site_15142 DeepMRMD:0.900196552276612;iRNA_m5C:0.999536712161071 Spastic Paraplegia, Recessive Spastic Paraplegia, Recessive 15143 chr19 7626456 7626456 1 + G A rs561526950 7626474 + 7626454 7626494 41 TCGACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTGGGC TCAACAGGGGTCACCCCCTCCCTCCCACCCCTGGACTGGGC < 41bp 1 0.079026846034375 1 0.404252171516418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 UTR3 Human protein_coding chr19:7626474 chr19:7626456 . . 0 3 hm5C_associated_SNPs_13235 1 0 0 1 1 Ribosome 1 0.500231643921036 1 0.999536712157927 hm5C_site_15143 DeepMRMD:1;iRNA_m5C:0.999536712157927 Spastic Paraplegia, Recessive Spastic Paraplegia, Recessive 15144 chr19 7676674 7676674 1 + C T rs200273174 7676663 + 7676643 7676683 41 GGAGACCCTGTGCTCCTCCGCTCTGTGAGCTCGGACAGCCT GGAGACCCTGTGCTCCTCCGCTCTGTGAGCTTGGACAGCCT < 41bp 1 0.331232397758394 1 0.186805933713913 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7676663 chr19:7676674 nonsynonymous SNV 0.812 3 32 hm5C_associated_SNPs_13237 0 0 1 0 0 nucleus 1 0.500231643909645 1 0.99953671218071 hm5C_site_15144 DeepMRMD:1;iRNA_m5C:0.99953671218071 15145 chr19 7696198 7696198 1 + G A rs113124654 7696203 + 7696183 7696223 41 AAGCGGATCCCACGCGGACCCCTTTGTAATTGGCAGGGGGC AAGCGGATCCCACGCAGACCCCTTTGTAATTGGCAGGGGGC < 41bp 1 0.0660924405970532 1 0.0641557276248932 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PET100 ENSG00000229833 UTR3 Human protein_coding chr19:7696203 chr19:7696198 . . 0 16 hm5C_associated_SNPs_13238 0 0 1 0 2 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_15145 DeepMRMD:1;iRNA_m5C:0.99953671215781 15146 chr19 7712708 7712708 1 + G A rs28464386 7712710 + 7712690 7712730 41 GCCCTGACCCCTGGCCCCGCCCCCTACCCCTCCCTTTCCAG GCCCTGACCCCTGGCCCCACCCCCTACCCCTCCCTTTCCAG < 41bp 1 0.328296787328973 1 0.18964084982872 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STXBP2 ENSG00000076944 UTR3 Human protein_coding chr19:7712710 chr19:7712708 . . 0 19 hm5C_associated_SNPs_13239 3 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15146 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 15147 chr19 7712708 7712708 1 + G A rs28464386 7712711 + 7712691 7712731 41 CCCTGACCCCTGGCCCCGCCCCCTACCCCTCCCTTTCCAGA CCCTGACCCCTGGCCCCACCCCCTACCCCTCCCTTTCCAGA < 41bp 1 0.339275082626802 1 0.122949033975601 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STXBP2 ENSG00000076944 UTR3 Human protein_coding chr19:7712711 chr19:7712708 . . 0 18 hm5C_associated_SNPs_13240 3 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_15147 DeepMRMD:1;iRNA_m5C:0.999536712157816 not specified not specified 15148 chr19 7745745 7745745 1 + G A rs116496345 7745733 + 7745713 7745753 41 CCTTTTACGGCGCCGTAAAGCAGCTCGGCCGAGCAGACTGC CCTTTTACGGCGCCGTAAAGCAGCTCGGCCGAACAGACTGC < 41bp 1 0.656108077081147 1 0.701391577720642 experiment 0.687783845837705 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TRAPPC5 ENSG00000181029 UTR5 Human protein_coding chr19:7745733 chr19:7745745 . . 0 33 hm5C_associated_SNPs_13241 0 0 1 0 1 chromatin 1 0.500231836300687 0.597216844558716 0.999536327398627 hm5C_site_15148 DeepMRMD:0.597216844558716;iRNA_m5C:0.999536327398627 15149 chr19 7963948 7963948 1 + G A rs3745379 7963943 + 7963923 7963963 41 GAACCAGAAGGGCCCAGCAGCCACCGAACGGGCTGCGGCCA GAACCAGAAGGGCCCAGCAGCCACCAAACGGGCTGCGGCCA < 41bp 1 0.177171300501211 1 0.112240850925446 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC8E ENSG00000171017 CDS Human protein_coding chr19:7963943 chr19:7963948 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_13242 0 0 1 0 0 chromatin 1 0.500231643937975 1 0.99953671212405 hm5C_site_15149 DeepMRMD:1;iRNA_m5C:0.99953671212405 15150 chr19 7963949 7963949 1 + A G rs2042919 7963943 + 7963923 7963963 41 GAACCAGAAGGGCCCAGCAGCCACCGAACGGGCTGCGGCCA GAACCAGAAGGGCCCAGCAGCCACCGGACGGGCTGCGGCCA < 41bp 1 0.216666103309926 1 0.187816560268402 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC8E ENSG00000171017 CDS Human protein_coding chr19:7963943 chr19:7963949 nonsynonymous SNV 0.000 0 27 hm5C_associated_SNPs_13243 0 0 1 0 0 chromatin 1 0.500231643921094 1 0.999536712157811 hm5C_site_15150 DeepMRMD:1;iRNA_m5C:0.999536712157811 15151 chr19 7977794 7977794 1 + C T rs576342121 7977814 + 7977794 7977834 41 CCTGAGCCTGGGCCCAGCCACCTCCTGACGGGTCCCCTGGG TCTGAGCCTGGGCCCAGCCACCTCCTGACGGGTCCCCTGGG < 41bp 1 0.0675286207866211 1 0.280259490013123 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K7 ENSG00000268149 ncRNA_exonic Human antisense chr19:7977814 chr19:7977794 . . 0 1 hm5C_associated_SNPs_13244 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15151 DeepMRMD:1;iRNA_m5C:0.999536712157815 15152 chr19 7977822 7977822 1 + C T rs535957384 7977814 + 7977794 7977834 41 CCTGAGCCTGGGCCCAGCCACCTCCTGACGGGTCCCCTGGG CCTGAGCCTGGGCCCAGCCACCTCCTGATGGGTCCCCTGGG < 41bp 1 0.0671179891706723 1 0.232921421527863 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K7 ENSG00000268149 ncRNA_intronic Human antisense chr19:7977814 chr19:7977822 . . 0 29 hm5C_associated_SNPs_13245 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15152 DeepMRMD:1;iRNA_m5C:0.999536712157815 15153 chr19 7979010 7979010 1 + C A rs183484324 7979011 + 7978991 7979031 41 TGCATGGCTGGTCCCAGGGCCAGCACAGGCCCGAGGCCGGG TGCATGGCTGGTCCCAGGGACAGCACAGGCCCGAGGCCGGG < 41bp 1 0.65266872407131 1 0.431987822055817 experiment 0.694662551857379 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP2K7 ENSG00000076984 UTR3 Human protein_coding chr19:7979011 chr19:7979010 . . 0 20 hm5C_associated_SNPs_13246 0 0 1 0 0 Cytosol 1 0.500231643897109 1 0.999536712205782 hm5C_site_15153 DeepMRMD:1;iRNA_m5C:0.999536712205782 15154 chr19 7979022 7979022 1 + C G rs561970618 7979010 + 7978990 7979030 41 TTGCATGGCTGGTCCCAGGGCCAGCACAGGCCCGAGGCCGG TTGCATGGCTGGTCCCAGGGCCAGCACAGGCCGGAGGCCGG < 41bp 1 0.261215923097426 1 0.549803495407104 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP2K7 ENSG00000076984 UTR3 Human protein_coding chr19:7979010 chr19:7979022 . . 0 33 hm5C_associated_SNPs_13247 0 0 1 0 0 Cytosol 1 0.500231643598463 0.900393009185792 0.999536712803073 hm5C_site_15154 DeepMRMD:0.900393009185792;iRNA_m5C:0.999536712803073 15155 chr19 7979022 7979022 1 + C G rs561970618 7979011 + 7978991 7979031 41 TGCATGGCTGGTCCCAGGGCCAGCACAGGCCCGAGGCCGGG TGCATGGCTGGTCCCAGGGCCAGCACAGGCCGGAGGCCGGG < 41bp 1 0.65562939414646 1 0.447930127382278 experiment 0.68874121170708 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP2K7 ENSG00000076984 UTR3 Human protein_coding chr19:7979011 chr19:7979022 . . 0 32 hm5C_associated_SNPs_13248 0 0 1 0 0 Cytosol 1 0.500231643918895 1 0.999536712162209 hm5C_site_15155 DeepMRMD:1;iRNA_m5C:0.999536712162209 15156 chr19 8320529 8320529 1 + G A rs140285977 8320515 + 8320495 8320535 41 AGCTGTCTCTCCTGGCCGCCCAGTGTGGCCTCACGCTGCAG AGCTGTCTCTCCTGGCCGCCCAGTGTGGCCTCACACTGCAG < 41bp 1 0.547090366077393 1 0.371229916810989 experiment 0.905819267845213 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8320515 chr19:8320529 synonymous SNV . 0 35 hm5C_associated_SNPs_13249 0 0 0 0 2 chromatin 1 0.50023164606631 1 0.99953670786738 hm5C_site_15156 DeepMRMD:1;iRNA_m5C:0.99953670786738 15157 chr19 8321885 8321885 1 + T C rs150540280 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTCCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG < 41bp 1 0.476736181445922 1 0.418733417987823 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321885 nonsynonymous SNV 0.451 3 4 hm5C_associated_SNPs_13250 0 0 0 0 2 chromatin 1 0.500225907935439 1 0.999548184129121 hm5C_site_15157 DeepMRMD:1;iRNA_m5C:0.999548184129121 15158 chr19 8478291 8478291 1 + C T rs530839730 8478285 + 8478265 8478305 41 CGAGGGGCCTGTGCGGCCGCCCGGCCCGGCCGCGGATCAGG CGAGGGGCCTGTGCGGCCGCCCGGCCTGGCCGCGGATCAGG < 41bp 1 0.461141302288917 1 0.420229196548462 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MARCH2 ENSG00000099785 UTR5 Human protein_coding chr19:8478285 chr19:8478291 . . 0 27 hm5C_associated_SNPs_13252 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15158 DeepMRMD:1;iRNA_m5C:0.999536712157815 15159 chr19 8478291 8478291 1 + C T rs530839730 8478286 + 8478266 8478306 41 GAGGGGCCTGTGCGGCCGCCCGGCCCGGCCGCGGATCAGGT GAGGGGCCTGTGCGGCCGCCCGGCCTGGCCGCGGATCAGGT < 41bp 1 0.572029994939782 1 0.806360960006714 experiment 0.855940010120437 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MARCH2 ENSG00000099785 UTR5 Human protein_coding chr19:8478286 chr19:8478291 . . 0 26 hm5C_associated_SNPs_13253 0 0 1 0 1 Cytosol 1 0.500231643886026 0.387278079986572 0.999536712227949 hm5C_site_15159 DeepMRMD:0.387278079986572;iRNA_m5C:0.999536712227949 15160 chr19 8478291 8478291 1 + C T rs530839730 8478289 + 8478269 8478309 41 GGGCCTGTGCGGCCGCCCGGCCCGGCCGCGGATCAGGTAGG GGGCCTGTGCGGCCGCCCGGCCTGGCCGCGGATCAGGTAGG < 41bp 1 0.308109978577612 1 0.141516268253326 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARCH2 ENSG00000099785 UTR5 Human protein_coding chr19:8478289 chr19:8478291 . . 0 23 hm5C_associated_SNPs_13254 0 0 1 0 1 Cytosol 1 0.500231643921225 1 0.999536712157549 hm5C_site_15160 DeepMRMD:1;iRNA_m5C:0.999536712157549 15161 chr19 8478291 8478291 1 + C T rs530839730 8478290 + 8478270 8478310 41 GGCCTGTGCGGCCGCCCGGCCCGGCCGCGGATCAGGTAGGC GGCCTGTGCGGCCGCCCGGCCTGGCCGCGGATCAGGTAGGC < 41bp 1 0.698068467629333 1 0.120095521211624 experiment 0.603863064741334 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARCH2 ENSG00000099785 UTR5 Human protein_coding chr19:8478290 chr19:8478291 . . 0 22 hm5C_associated_SNPs_13255 0 0 1 0 1 Cytosol 1 0.500231643061391 1 0.999536713877219 hm5C_site_15161 DeepMRMD:1;iRNA_m5C:0.999536713877219 15162 chr19 8551094 8551094 1 + T C rs2230647 8551091 + 8551071 8551111 41 AACAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCGGCCCT AACAGCCTCGAGCGCATGGGCCCCGCCATGGGCCCGGCCCT < 41bp 1 0.577948488957092 1 0.0476458966732025 experiment 0.844103022085816 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551091 chr19:8551094 synonymous SNV . 0 24 hm5C_associated_SNPs_13257 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15162 DeepMRMD:1;iRNA_m5C:0.999536712157815 15163 chr19 8551094 8551094 1 + T C rs2230647 8551092 + 8551072 8551112 41 ACAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCGGCCCTG ACAGCCTCGAGCGCATGGGCCCCGCCATGGGCCCGGCCCTG < 41bp 1 0.45207543512536 1 0.0819169282913208 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551092 chr19:8551094 synonymous SNV . 0 23 hm5C_associated_SNPs_13258 0 0 1 0 0 Nucleus 1 0.500231643920809 1 0.999536712158383 hm5C_site_15163 DeepMRMD:1;iRNA_m5C:0.999536712158383 15164 chr19 8551094 8551094 1 + T C rs2230647 8551093 + 8551073 8551113 41 CAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCGGCCCTGG CAGCCTCGAGCGCATGGGCCCCGCCATGGGCCCGGCCCTGG < 41bp 1 0.445786397079395 1 0.103292196989059 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551093 chr19:8551094 synonymous SNV . 0 22 hm5C_associated_SNPs_13259 0 0 1 0 0 Nucleus 1 0.500231644028225 1 0.99953671194355 hm5C_site_15164 DeepMRMD:1;iRNA_m5C:0.99953671194355 15165 chr19 8551094 8551094 1 + T C rs2230647 8551103 + 8551083 8551123 41 CGCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGGCAT CGCATGGGCCCCGCCATGGGCCCGGCCCTGGGCGCTGGCAT < 41bp 1 0.663447740184524 1 0.19781169295311 experiment 0.673104519630953 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551103 chr19:8551094 synonymous SNV . 0 12 hm5C_associated_SNPs_13260 0 0 1 0 0 Nucleus 1 0.500231635828164 1 0.999536728343671 hm5C_site_15165 DeepMRMD:1;iRNA_m5C:0.999536728343671 15166 chr19 8551094 8551094 1 + T C rs2230647 8551104 + 8551084 8551124 41 GCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGGCATT GCATGGGCCCCGCCATGGGCCCGGCCCTGGGCGCTGGCATT < 41bp 1 0.517917326112139 1 0.146790564060211 experiment 0.964165347775721 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551104 chr19:8551094 synonymous SNV . 0 11 hm5C_associated_SNPs_13261 0 0 1 0 0 Nucleus 1 0.500231643917802 1 0.999536712164396 hm5C_site_15166 DeepMRMD:1;iRNA_m5C:0.999536712164396 15167 chr19 8551112 8551112 1 + G A rs12977861 8551092 + 8551072 8551112 41 ACAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCGGCCCTG ACAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCGGCCCTA < 41bp 1 0.218172740809585 1 0.0487116873264313 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551092 chr19:8551112 synonymous SNV . 0 41 hm5C_associated_SNPs_13263 0 0 1 0 0 Nucleus 1 0.500231644298522 1 0.999536711402957 hm5C_site_15167 DeepMRMD:1;iRNA_m5C:0.999536711402957 15168 chr19 8551112 8551112 1 + G A rs12977861 8551103 + 8551083 8551123 41 CGCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGGCAT CGCATGGGCCCTGCCATGGGCCCGGCCCTAGGCGCTGGCAT < 41bp 1 0.619790100840968 1 0.108049750328064 experiment 0.760419798318064 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551103 chr19:8551112 synonymous SNV . 0 30 hm5C_associated_SNPs_13265 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15168 DeepMRMD:1;iRNA_m5C:0.999536712157815 15169 chr19 8551112 8551112 1 + G A rs12977861 8551104 + 8551084 8551124 41 GCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGGCATT GCATGGGCCCTGCCATGGGCCCGGCCCTAGGCGCTGGCATT < 41bp 1 0.500360920168982 1 0.146851390600204 experiment 0.999278159662036 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551104 chr19:8551112 synonymous SNV . 0 29 hm5C_associated_SNPs_13266 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15169 DeepMRMD:1;iRNA_m5C:0.999536712157815 15170 chr19 8551115 8551115 1 + C T rs61742109 8551103 + 8551083 8551123 41 CGCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGGCAT CGCATGGGCCCTGCCATGGGCCCGGCCCTGGGTGCTGGCAT < 41bp 1 0.620316382575069 1 0.13597646355629 experiment 0.759367234849861 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551103 chr19:8551115 synonymous SNV . 0 33 hm5C_associated_SNPs_13268 0 0 1 0 0 Nucleus 1 0.500231644067104 1 0.999536711865792 hm5C_site_15170 DeepMRMD:1;iRNA_m5C:0.999536711865792 15171 chr19 8551115 8551115 1 + C T rs61742109 8551104 + 8551084 8551124 41 GCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGGCATT GCATGGGCCCTGCCATGGGCCCGGCCCTGGGTGCTGGCATT < 41bp 1 0.549171440100511 1 0.203924596309662 experiment 0.901657119798978 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551104 chr19:8551115 synonymous SNV . 0 32 hm5C_associated_SNPs_13269 0 0 1 0 0 Nucleus 1 0.500231643920685 1 0.999536712158629 hm5C_site_15171 DeepMRMD:1;iRNA_m5C:0.999536712158629 15172 chr19 9454006 9454006 1 + A T rs114556235 9454016 + 9453996 9454036 41 AAACCTGTCGATGCTTACATCTTACTGAGTCTGTTTGAACT AAACCTGTCGTTGCTTACATCTTACTGAGTCTGTTTGAACT < 41bp 1 0.0768275191531334 1 0.210382878780365 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF559 ENSG00000188321 UTR3 Human protein_coding chr19:9454016 chr19:9454006 . . 0 11 hm5C_associated_SNPs_13271 0 0 1 0 0 Cytosol 1 0.500240447794102 1 0.999519104411796 hm5C_site_15172 DeepMRMD:1;iRNA_m5C:0.999519104411796 15173 chr19 9960114 9960114 1 + G A rs138973404 9960128 + 9960108 9960148 41 ACTTCAGCAGGGGTGGGAGGCTCCCAGACCCAGGGCAGTGT ACTTCAACAGGGGTGGGAGGCTCCCAGACCCAGGGCAGTGT < 41bp 1 0.196651056823377 1 0.337972044944763 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIN1 ENSG00000127445 UTR3 Human protein_coding chr19:9960128 chr19:9960114 . . 0 7 hm5C_associated_SNPs_13272 0 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15173 DeepMRMD:1;iRNA_m5C:0.999536712157815 15174 chr19 10218332 10218332 1 + A C rs2305789 10218336 + 10218316 10218356 41 GACCCCCCCTTCCCCTATCTCTCATGATGAACACATATGCC GACCCCCCCTTCCCCTCTCTCTCATGATGAACACATATGCC < 41bp 1 0.161972619355139 1 0.181389838457108 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD105 ENSG00000209645 ncRNA_exonic Human snoRNA chr19:10218336 chr19:10218332 . . 0 17 hm5C_associated_SNPs_13273 0 0 1 0 0 unknown 1 0.50023164392123 1 0.999536712157539 hm5C_site_15174 DeepMRMD:1;iRNA_m5C:0.999536712157539 15175 chr19 10218391 10218391 1 + C T rs140010724 10218375 + 10218355 10218395 41 CCTCTGAGCTGCTGTGATTTCTGGCTTCAAAGTAAACGCTC CCTCTGAGCTGCTGTGATTTCTGGCTTCAAAGTAAATGCTC < 41bp 1 0.673609585006717 1 0.588174760341644 experiment 0.652780829986565 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD105 ENSG00000209645 ncRNA_exonic Human snoRNA chr19:10218375 chr19:10218391 . . 0 37 hm5C_associated_SNPs_13274 0 0 1 0 0 unknown 1 0.500196385171037 0.823650479316712 0.999607229657927 hm5C_site_15175 DeepMRMD:0.823650479316712;iRNA_m5C:0.999607229657927 15176 chr19 10218391 10218391 1 + C T rs140010724 10218393 + 10218373 10218413 41 TTCTGGCTTCAAAGTAAACGCTCTGAAGAAGAGATGGGGCA TTCTGGCTTCAAAGTAAATGCTCTGAAGAAGAGATGGGGCA < 41bp 1 0.245436278806679 1 0.371623039245605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD105 ENSG00000209645 ncRNA_exonic Human snoRNA chr19:10218393 chr19:10218391 . . 0 19 hm5C_associated_SNPs_13275 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15176 DeepMRMD:1;iRNA_m5C:0.999536712157815 15177 chr19 10218408 10218408 1 + G A rs2305790 10218393 + 10218373 10218413 41 TTCTGGCTTCAAAGTAAACGCTCTGAAGAAGAGATGGGGCA TTCTGGCTTCAAAGTAAACGCTCTGAAGAAGAGATAGGGCA < 41bp 1 0.244898932939613 1 0.325638651847839 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD105 ENSG00000209645 ncRNA_exonic Human snoRNA chr19:10218393 chr19:10218408 . . 0 36 hm5C_associated_SNPs_13276 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15177 DeepMRMD:1;iRNA_m5C:0.999536712157815 15178 chr19 10218409 10218409 1 + G C rs184113513 10218393 + 10218373 10218413 41 TTCTGGCTTCAAAGTAAACGCTCTGAAGAAGAGATGGGGCA TTCTGGCTTCAAAGTAAACGCTCTGAAGAAGAGATGCGGCA < 41bp 1 0.250196406227521 1 0.320507705211639 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD105 ENSG00000209645 ncRNA_exonic Human snoRNA chr19:10218393 chr19:10218409 . . 0 37 hm5C_associated_SNPs_13277 0 0 0 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_15178 DeepMRMD:1;iRNA_m5C:0.999536712157815 15179 chr19 10225370 10225370 1 + G A rs78052894 10225362 + 10225342 10225382 41 CCAAGCCCTGCCCCTCAATGCCACAGCCGCCCCTAAACCGT CCAAGCCCTGCCCCTCAATGCCACAGCCACCCCTAAACCGT < 41bp 1 0.55733907441113 1 0.112845748662949 experiment 0.88532185117774 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control P2RY11;PPAN-P2RY11 ENSG00000130810;ENSG00000243207;ENSG00000244165 CDS Human other chr19:10225362 chr19:10225370 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_13278 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15179 DeepMRMD:1;iRNA_m5C:0.999536712157815 15180 chr19 10370403 10370403 1 + T C rs142765226 10370393 + 10370373 10370413 41 CTCTGGCAGGACTCACGTTACAGACCCCTCTACCCCTTCAG CTCTGGCAGGACTCACGTTACAGACCCCTCCACCCCTTCAG < 41bp 1 0.577573730824857 1 0.565484941005707 experiment 0.844852538350285 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10370393 chr19:10370403 nonsynonymous SNV 0.052 2 31 hm5C_associated_SNPs_13279 0 0 1 0 0 Cytosol 1 0.500231643921092 0.869030117988586 0.999536712157815 hm5C_site_15180 DeepMRMD:0.869030117988586;iRNA_m5C:0.999536712157815 15181 chr19 10404990 10404990 1 + G A rs180744933 10404989 + 10404969 10405009 41 CAAAACAGTCGTCGTGAGCGCGGAGTGTGAGCGAGGCCCAG CAAAACAGTCGTCGTGAGCGCAGAGTGTGAGCGAGGCCCAG < 41bp 1 0.490468946185931 1 0.711774349212646 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10404989 chr19:10404990 synonymous SNV . 0 22 hm5C_associated_SNPs_13281 0 0 1 0 0 Endoplasmic reticulum 1 0.500200201316693 0.576451301574708 0.999599597366615 hm5C_site_15181 DeepMRMD:0.576451301574708;iRNA_m5C:0.999599597366615 15182 chr19 10794149 10794149 1 + C T rs143757354 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTTGCCCTTG < 41bp 1 0.412219525376473 1 0.0529824793338776 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794149 synonymous SNV . 0 34 hm5C_associated_SNPs_13283 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15182 DeepMRMD:1;iRNA_m5C:0.999536712157815 15183 chr19 10794149 10794149 1 + C T rs143757354 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCCCTGACACCCCTCTTGCCCTTGATGCCA < 41bp 1 0.189602480289203 1 0.0576573312282562 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794149 synonymous SNV . 0 28 hm5C_associated_SNPs_13284 0 0 1 0 1 Cytosol 1 0.500231643921193 1 0.999536712157614 hm5C_site_15183 DeepMRMD:1;iRNA_m5C:0.999536712157614 15184 chr19 10794710 10794710 1 + T A rs111226263 10794699 + 10794679 10794719 41 AAGCAGCTGCAGTGTAGCGTCTGGGCCTGAGTTAGCAAAGG AAGCAGCTGCAGTGTAGCGTCTGGGCCTGAGATAGCAAAGG < 41bp 1 0.541189063480189 1 0.804585754871368 experiment 0.917621873039622 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10794699 chr19:10794710 . . 0 32 hm5C_associated_SNPs_13285 0 0 1 0 0 Cytosol 1 0.500231653628448 0.390828490257264 0.999536692743105 hm5C_site_15184 DeepMRMD:0.390828490257264;iRNA_m5C:0.999536692743105 15185 chr19 10800091 10800091 1 + G A rs534424497 10800086 + 10800066 10800106 41 ATGTCAGCTGGCCCTCCAGGCCCCCGCCCCCATCCCGTCCA ATGTCAGCTGGCCCTCCAGGCCCCCACCCCCATCCCGTCCA < 41bp 1 0.129145344192668 1 0.0568925738334656 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10800086 chr19:10800091 . . 0 26 hm5C_associated_SNPs_13286 0 0 1 0 0 Cytosol 1 0.500231654908891 1 0.999536690182218 hm5C_site_15185 DeepMRMD:1;iRNA_m5C:0.999536690182218 15186 chr19 10800091 10800091 1 + G A rs534424497 10800087 + 10800067 10800107 41 TGTCAGCTGGCCCTCCAGGCCCCCGCCCCCATCCCGTCCAC TGTCAGCTGGCCCTCCAGGCCCCCACCCCCATCCCGTCCAC < 41bp 1 0.517492285581445 1 0.173723369836807 experiment 0.96501542883711 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10800087 chr19:10800091 . . 0 25 hm5C_associated_SNPs_13287 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_15186 DeepMRMD:1;iRNA_m5C:0.999536712157815 15187 chr19 10800091 10800091 1 + G A rs534424497 10800088 + 10800068 10800108 41 GTCAGCTGGCCCTCCAGGCCCCCGCCCCCATCCCGTCCACG GTCAGCTGGCCCTCCAGGCCCCCACCCCCATCCCGTCCACG < 41bp 1 0.0589855512777922 1 0.0200353264808655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10800088 chr19:10800091 . . 0 24 hm5C_associated_SNPs_13288 0 0 1 0 0 Cytosol 1 0.500231648578746 1 0.999536702842508 hm5C_site_15187 DeepMRMD:1;iRNA_m5C:0.999536702842508 15188 chr19 10800091 10800091 1 + G A rs534424497 10800089 + 10800069 10800109 41 TCAGCTGGCCCTCCAGGCCCCCGCCCCCATCCCGTCCACGT TCAGCTGGCCCTCCAGGCCCCCACCCCCATCCCGTCCACGT < 41bp 1 0.0684183288095327 1 0.0119904577732086 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10800089 chr19:10800091 . . 0 23 hm5C_associated_SNPs_13289 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15188 DeepMRMD:1;iRNA_m5C:0.999536712157815 15189 chr19 10800091 10800091 1 + G A rs534424497 10800090 + 10800070 10800110 41 CAGCTGGCCCTCCAGGCCCCCGCCCCCATCCCGTCCACGTT CAGCTGGCCCTCCAGGCCCCCACCCCCATCCCGTCCACGTT < 41bp 1 0.144841130286474 1 0.117389172315598 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10800090 chr19:10800091 . . 0 22 hm5C_associated_SNPs_13290 0 0 1 0 0 Cytosol 1 0.500231643938739 1 0.999536712122522 hm5C_site_15189 DeepMRMD:1;iRNA_m5C:0.999536712122522 15190 chr19 10800091 10800091 1 + G A rs534424497 10800092 + 10800072 10800112 41 GCTGGCCCTCCAGGCCCCCGCCCCCATCCCGTCCACGTTGC GCTGGCCCTCCAGGCCCCCACCCCCATCCCGTCCACGTTGC < 41bp 1 0.180774299915931 1 0.345335751771927 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10800092 chr19:10800091 . . 0 20 hm5C_associated_SNPs_13291 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157813 hm5C_site_15190 DeepMRMD:1;iRNA_m5C:0.999536712157813 15191 chr19 10800091 10800091 1 + G A rs534424497 10800093 + 10800073 10800113 41 CTGGCCCTCCAGGCCCCCGCCCCCATCCCGTCCACGTTGCT CTGGCCCTCCAGGCCCCCACCCCCATCCCGTCCACGTTGCT < 41bp 1 0.248477292073619 1 0.495488524436951 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10800093 chr19:10800091 . . 0 19 hm5C_associated_SNPs_13292 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_15191 DeepMRMD:1;iRNA_m5C:0.999536712157815 15192 chr19 10800091 10800091 1 + G A rs534424497 10800094 + 10800074 10800114 41 TGGCCCTCCAGGCCCCCGCCCCCATCCCGTCCACGTTGCTG TGGCCCTCCAGGCCCCCACCCCCATCCCGTCCACGTTGCTG < 41bp 1 0.0711416053579627 1 0.069181352853775 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10800094 chr19:10800091 . . 0 18 hm5C_associated_SNPs_13293 0 0 1 0 0 Cytosol 1 0.500231643921867 1 0.999536712156265 hm5C_site_15192 DeepMRMD:1;iRNA_m5C:0.999536712156265 15193 chr19 10800091 10800091 1 + G A rs534424497 10800095 + 10800075 10800115 41 GGCCCTCCAGGCCCCCGCCCCCATCCCGTCCACGTTGCTGT GGCCCTCCAGGCCCCCACCCCCATCCCGTCCACGTTGCTGT < 41bp 1 0.0298385618247095 1 0.0484367609024048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10800095 chr19:10800091 . . 0 17 hm5C_associated_SNPs_13294 0 0 1 0 0 Cytosol 1 0.500231643921198 1 0.999536712157604 hm5C_site_15193 DeepMRMD:1;iRNA_m5C:0.999536712157604 15194 chr19 10800091 10800091 1 + G A rs534424497 10800096 + 10800076 10800116 41 GCCCTCCAGGCCCCCGCCCCCATCCCGTCCACGTTGCTGTG GCCCTCCAGGCCCCCACCCCCATCCCGTCCACGTTGCTGTG < 41bp 1 0.108797835551836 1 0.0392794013023376 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10800096 chr19:10800091 . . 0 16 hm5C_associated_SNPs_13295 0 0 1 0 0 Cytosol 1 0.500231643921106 1 0.999536712157788 hm5C_site_15194 DeepMRMD:1;iRNA_m5C:0.999536712157788 15195 chr19 10886512 10886512 1 + T C rs77702567 10886497 + 10886477 10886517 41 CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAC CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCCGTCAC < 41bp 1 0.263093490905186 1 0.238194972276688 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886497 chr19:10886512 synonymous SNV . 0 36 hm5C_associated_SNPs_13296 4 0 1 0 1 Nucleus 1 0.500231643825906 1 0.999536712348188 hm5C_site_15195 DeepMRMD:1;iRNA_m5C:0.999536712348188 not specified not specified 15196 chr19 10893735 10893735 1 + C A rs3745674 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCAGGCCTA < 41bp 1 0.157413493571498 1 0.0808134078979492 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893735 nonsynonymous SNV 0.993 4 35 hm5C_associated_SNPs_13297 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15196 DeepMRMD:1;iRNA_m5C:0.999536712157815 15197 chr19 10893736 10893736 1 + G A rs199976453 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCAGCCTA < 41bp 1 0.172533653464937 1 0.0671450197696686 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893736 synonymous SNV . 0 36 hm5C_associated_SNPs_13298 3 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15197 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 15198 chr19 10893739 10893739 1 + C A rs530978513 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCATA < 41bp 1 0.153271935385344 1 0.0453066825866699 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893739 synonymous SNV . 0 39 hm5C_associated_SNPs_13299 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15198 DeepMRMD:1;iRNA_m5C:0.999536712157815 15199 chr19 10941872 10941872 1 + G A rs577028326 10941861 + 10941841 10941881 41 GCCTCTTCCTTAACGCTGGCCCCGGTCCAGGGCCGGCCCCT GCCTCTTCCTTAACGCTGGCCCCGGTCCAGGACCGGCCCCT < 41bp 1 0.348160466674051 1 0.151492178440094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 UTR3 Human protein_coding chr19:10941861 chr19:10941872 . . 0 32 hm5C_associated_SNPs_13300 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15199 DeepMRMD:1;iRNA_m5C:0.999536712157815 15200 chr19 10942324 10942324 1 + C T rs185820576 10942310 + 10942290 10942330 41 AGAGGTGCCTTTGCTAGGCCCGGAGCCGTTGGCCCGGGCCG AGAGGTGCCTTTGCTAGGCCCGGAGCCGTTGGCCTGGGCCG < 41bp 1 0.518992506011914 1 0.536906242370605 experiment 0.962014987976172 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNM2 ENSG00000079805 UTR3 Human protein_coding chr19:10942310 chr19:10942324 . . 0 35 hm5C_associated_SNPs_13301 2 0 1 0 0 Nucleus 1 0.500231643948196 0.92618751525879 0.999536712103608 hm5C_site_15200 DeepMRMD:0.92618751525879;iRNA_m5C:0.999536712103608 Charcot-Marie-Tooth, Intermediate Charcot-Marie-Tooth, Intermediate 15201 chr19 10942324 10942324 1 + C T rs185820576 10942323 + 10942303 10942343 41 CTAGGCCCGGAGCCGTTGGCCCGGGCCGGCCTTGCCCTATT CTAGGCCCGGAGCCGTTGGCCTGGGCCGGCCTTGCCCTATT < 41bp 1 0.686581578359733 1 0.776824176311493 experiment 0.626836843280535 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNM2 ENSG00000079805 UTR3 Human protein_coding chr19:10942323 chr19:10942324 . . 0 22 hm5C_associated_SNPs_13302 2 0 1 0 0 Nucleus 1 0.500231643921092 0.446351647377014 0.999536712157815 hm5C_site_15201 DeepMRMD:0.446351647377014;iRNA_m5C:0.999536712157815 Charcot-Marie-Tooth, Intermediate Charcot-Marie-Tooth, Intermediate 15202 chr19 10942324 10942324 1 + C T rs185820576 10942328 + 10942308 10942348 41 CCCGGAGCCGTTGGCCCGGGCCGGCCTTGCCCTATTCCTCT CCCGGAGCCGTTGGCCTGGGCCGGCCTTGCCCTATTCCTCT < 41bp 1 0.290122731070668 1 0.115175575017929 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNM2 ENSG00000079805 UTR3 Human protein_coding chr19:10942328 chr19:10942324 . . 0 17 hm5C_associated_SNPs_13303 2 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15202 DeepMRMD:1;iRNA_m5C:0.999536712157815 Charcot-Marie-Tooth, Intermediate Charcot-Marie-Tooth, Intermediate 15203 chr19 10942324 10942324 1 + C T rs185820576 10942329 + 10942309 10942349 41 CCGGAGCCGTTGGCCCGGGCCGGCCTTGCCCTATTCCTCTC CCGGAGCCGTTGGCCTGGGCCGGCCTTGCCCTATTCCTCTC < 41bp 1 0.466043862103207 1 0.451324433088303 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNM2 ENSG00000079805 UTR3 Human protein_coding chr19:10942329 chr19:10942324 . . 0 16 hm5C_associated_SNPs_13304 2 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15203 DeepMRMD:1;iRNA_m5C:0.999536712157815 Charcot-Marie-Tooth, Intermediate Charcot-Marie-Tooth, Intermediate 15204 chr19 10942330 10942330 1 + G A rs117954916 10942310 + 10942290 10942330 41 AGAGGTGCCTTTGCTAGGCCCGGAGCCGTTGGCCCGGGCCG AGAGGTGCCTTTGCTAGGCCCGGAGCCGTTGGCCCGGGCCA < 41bp 1 0.519951088510045 1 0.606823563575745 experiment 0.96009782297991 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNM2 ENSG00000079805 UTR3 Human protein_coding chr19:10942310 chr19:10942330 . . 0 41 hm5C_associated_SNPs_13305 2 0 1 0 0 Nucleus 1 0.500231643921092 0.78635287284851 0.999536712157815 hm5C_site_15204 DeepMRMD:0.78635287284851;iRNA_m5C:0.999536712157815 Centronuclear Myopathy, Dominant Centronuclear Myopathy, Dominant 15205 chr19 10942330 10942330 1 + G A rs117954916 10942323 + 10942303 10942343 41 CTAGGCCCGGAGCCGTTGGCCCGGGCCGGCCTTGCCCTATT CTAGGCCCGGAGCCGTTGGCCCGGGCCAGCCTTGCCCTATT < 41bp 1 0.503416024436849 1 0.896642208099365 experiment 0.993167951126303 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNM2 ENSG00000079805 UTR3 Human protein_coding chr19:10942323 chr19:10942330 . . 0 28 hm5C_associated_SNPs_13306 2 0 1 0 0 Nucleus 1 0.500231643921094 0.20671558380127 0.999536712157812 hm5C_site_15205 DeepMRMD:0.20671558380127;iRNA_m5C:0.999536712157812 Centronuclear Myopathy, Dominant Centronuclear Myopathy, Dominant 15206 chr19 10942330 10942330 1 + G A rs117954916 10942324 + 10942304 10942344 41 TAGGCCCGGAGCCGTTGGCCCGGGCCGGCCTTGCCCTATTC TAGGCCCGGAGCCGTTGGCCCGGGCCAGCCTTGCCCTATTC < 41bp 1 0.561114284756012 1 0.874695301055908 experiment 0.877771430487977 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNM2 ENSG00000079805 UTR3 Human protein_coding chr19:10942324 chr19:10942330 . . 0 27 hm5C_associated_SNPs_13307 2 0 1 0 0 Nucleus 1 0.500231643921092 0.250609397888184 0.999536712157815 hm5C_site_15206 DeepMRMD:0.250609397888184;iRNA_m5C:0.999536712157815 Centronuclear Myopathy, Dominant Centronuclear Myopathy, Dominant 15207 chr19 10942330 10942330 1 + G A rs117954916 10942328 + 10942308 10942348 41 CCCGGAGCCGTTGGCCCGGGCCGGCCTTGCCCTATTCCTCT CCCGGAGCCGTTGGCCCGGGCCAGCCTTGCCCTATTCCTCT < 41bp 1 0.16895432300509 1 0.0640980899333954 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNM2 ENSG00000079805 UTR3 Human protein_coding chr19:10942328 chr19:10942330 . . 0 23 hm5C_associated_SNPs_13308 2 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15207 DeepMRMD:1;iRNA_m5C:0.999536712157815 Centronuclear Myopathy, Dominant Centronuclear Myopathy, Dominant 15208 chr19 10942330 10942330 1 + G A rs117954916 10942329 + 10942309 10942349 41 CCGGAGCCGTTGGCCCGGGCCGGCCTTGCCCTATTCCTCTC CCGGAGCCGTTGGCCCGGGCCAGCCTTGCCCTATTCCTCTC < 41bp 1 0.402005269291904 1 0.166435569524765 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DNM2 ENSG00000079805 UTR3 Human protein_coding chr19:10942329 chr19:10942330 . . 0 22 hm5C_associated_SNPs_13309 2 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15208 DeepMRMD:1;iRNA_m5C:0.999536712157815 Centronuclear Myopathy, Dominant Centronuclear Myopathy, Dominant 15209 chr19 11032424 11032424 1 + C T rs147684194 11032439 + 11032419 11032459 41 CACTACGGGAGCTAGGGGCCCGCCCCGCGGACTGACAGCAC CACTATGGGAGCTAGGGGCCCGCCCCGCGGACTGACAGCAC < 41bp 1 0.343712954181241 1 0.190934062004089 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CARM1 ENSG00000142453 CDS Human protein_coding chr19:11032439 chr19:11032424 synonymous SNV . 0 6 hm5C_associated_SNPs_13310 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_15209 DeepMRMD:1;iRNA_m5C:0.999536712157815 15210 chr19 11032984 11032984 1 + C T rs562082626 11032999 + 11032979 11033019 41 GGCGCCGCGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGC GGCGCTGCGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGC < 41bp 1 0.35869461056627 1 0.313939452171326 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11032999 chr19:11032984 . . 0 6 hm5C_associated_SNPs_13311 0 0 1 0 0 Ribosome 1 0.500231643916751 1 0.999536712166497 hm5C_site_15210 DeepMRMD:1;iRNA_m5C:0.999536712166497 15211 chr19 11032984 11032984 1 + C T rs562082626 11033000 + 11032980 11033020 41 GCGCCGCGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGCC GCGCTGCGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGCC < 41bp 1 0.407220119448362 1 0.471371650695801 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11033000 chr19:11032984 . . 0 5 hm5C_associated_SNPs_13312 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15211 DeepMRMD:1;iRNA_m5C:0.999536712157815 15212 chr19 11032984 11032984 1 + C T rs562082626 11033001 + 11032981 11033021 41 CGCCGCGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGCCC CGCTGCGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGCCC < 41bp 1 0.376825639512877 1 0.401855289936066 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11033001 chr19:11032984 . . 0 4 hm5C_associated_SNPs_13313 0 0 1 0 0 Ribosome 1 0.500231643927271 1 0.999536712145459 hm5C_site_15212 DeepMRMD:1;iRNA_m5C:0.999536712145459 15213 chr19 11032986 11032986 1 + C T rs529371765 11032999 + 11032979 11033019 41 GGCGCCGCGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGC GGCGCCGTGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGC < 41bp 1 0.378660665848057 1 0.2834233045578 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11032999 chr19:11032986 . . 0 8 hm5C_associated_SNPs_13314 0 0 1 0 0 Ribosome 1 0.500231626965912 1 0.999536746068175 hm5C_site_15213 DeepMRMD:1;iRNA_m5C:0.999536746068175 15214 chr19 11032986 11032986 1 + C T rs529371765 11033000 + 11032980 11033020 41 GCGCCGCGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGCC GCGCCGTGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGCC < 41bp 1 0.417059082693087 1 0.305575251579285 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11033000 chr19:11032986 . . 0 7 hm5C_associated_SNPs_13315 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15214 DeepMRMD:1;iRNA_m5C:0.999536712157815 15215 chr19 11032986 11032986 1 + C T rs529371765 11033001 + 11032981 11033021 41 CGCCGCGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGCCC CGCCGTGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGCCC < 41bp 1 0.38475683426078 1 0.276163280010223 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11033001 chr19:11032986 . . 0 6 hm5C_associated_SNPs_13316 0 0 1 0 0 Ribosome 1 0.500231643223414 1 0.999536713553172 hm5C_site_15215 DeepMRMD:1;iRNA_m5C:0.999536713553172 15216 chr19 11033003 11033003 1 + G A rs190617590 11032999 + 11032979 11033019 41 GGCGCCGCGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGC GGCGCCGCGGGGAGGGGTGGCCCCACCGAGGCTTCAGGGGC < 41bp 1 0.460557710248248 1 0.545105159282684 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11032999 chr19:11033003 . . 0 25 hm5C_associated_SNPs_13318 0 0 1 0 0 Ribosome 1 0.500231643921017 0.909789681434632 0.999536712157965 hm5C_site_15216 DeepMRMD:0.909789681434632;iRNA_m5C:0.999536712157965 15217 chr19 11033003 11033003 1 + G A rs190617590 11033000 + 11032980 11033020 41 GCGCCGCGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGCC GCGCCGCGGGGAGGGGTGGCCCCACCGAGGCTTCAGGGGCC < 41bp 1 0.214919568200466 1 0.506681203842163 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11033000 chr19:11033003 . . 0 24 hm5C_associated_SNPs_13319 0 0 1 0 0 Ribosome 1 0.500231643921092 0.986637592315674 0.999536712157815 hm5C_site_15217 DeepMRMD:0.986637592315674;iRNA_m5C:0.999536712157815 15218 chr19 11033003 11033003 1 + G A rs190617590 11033001 + 11032981 11033021 41 CGCCGCGGGGAGGGGTGGCCCCGCCGAGGCTTCAGGGGCCC CGCCGCGGGGAGGGGTGGCCCCACCGAGGCTTCAGGGGCCC < 41bp 1 0.248607747594454 1 0.318134635686874 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11033001 chr19:11033003 . . 0 23 hm5C_associated_SNPs_13320 0 0 1 0 0 Ribosome 1 0.500231643920418 1 0.999536712159165 hm5C_site_15218 DeepMRMD:1;iRNA_m5C:0.999536712159165 15219 chr19 11033003 11033003 1 + G A rs190617590 11033019 + 11032999 11033039 41 CCCCGCCGAGGCTTCAGGGGCCCCCTCCCCACCAAAGGGTT CCCCACCGAGGCTTCAGGGGCCCCCTCCCCACCAAAGGGTT < 41bp 1 0.0440106333683162 1 0.15793189406395 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11033019 chr19:11033003 . . 0 5 hm5C_associated_SNPs_13322 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15219 DeepMRMD:1;iRNA_m5C:0.999536712157815 15220 chr19 11033003 11033003 1 + G A rs190617590 11033020 + 11033000 11033040 41 CCCGCCGAGGCTTCAGGGGCCCCCTCCCCACCAAAGGGTTC CCCACCGAGGCTTCAGGGGCCCCCTCCCCACCAAAGGGTTC < 41bp 1 0.0993687983162095 1 0.0246709287166595 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11033020 chr19:11033003 . . 0 4 hm5C_associated_SNPs_13323 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_15220 DeepMRMD:1;iRNA_m5C:0.999536712157816 15221 chr19 11033003 11033003 1 + G A rs190617590 11033021 + 11033001 11033041 41 CCGCCGAGGCTTCAGGGGCCCCCTCCCCACCAAAGGGTTCA CCACCGAGGCTTCAGGGGCCCCCTCCCCACCAAAGGGTTCA < 41bp 1 0.0326397953305048 1 0.0389680564403534 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11033021 chr19:11033003 . . 0 3 hm5C_associated_SNPs_13324 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15221 DeepMRMD:1;iRNA_m5C:0.999536712157815 15222 chr19 11033003 11033003 1 + G A rs190617590 11033022 + 11033002 11033042 41 CGCCGAGGCTTCAGGGGCCCCCTCCCCACCAAAGGGTTCAC CACCGAGGCTTCAGGGGCCCCCTCCCCACCAAAGGGTTCAC < 41bp 1 0.0258237387418331 1 0.0442614257335663 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11033022 chr19:11033003 . . 0 2 hm5C_associated_SNPs_13325 0 0 1 0 0 Ribosome 1 0.500231643921089 1 0.999536712157823 hm5C_site_15222 DeepMRMD:1;iRNA_m5C:0.999536712157823 15223 chr19 11033003 11033003 1 + G A rs190617590 11033023 + 11033003 11033043 41 GCCGAGGCTTCAGGGGCCCCCTCCCCACCAAAGGGTTCACC ACCGAGGCTTCAGGGGCCCCCTCCCCACCAAAGGGTTCACC < 41bp 1 0.19028541789488 1 0.257799088954926 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CARM1 ENSG00000142453 UTR3 Human protein_coding chr19:11033023 chr19:11033003 . . 0 1 hm5C_associated_SNPs_13326 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15223 DeepMRMD:1;iRNA_m5C:0.999536712157815 15224 chr19 11105593 11105593 1 + A G rs17001075 11105582 + 11105562 11105602 41 TCACAGGCAAAATCCAGAAGCTGACCAAGGCAGTGGCCACG TCACAGGCAAAATCCAGAAGCTGACCAAGGCGGTGGCCACG < 41bp 1 0.153568184037677 1 0.149001628160477 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105582 chr19:11105593 synonymous SNV . 0 32 hm5C_associated_SNPs_13327 3 0 1 0 2 Nucleus 1 0.500227756271325 1 0.999544487457351 hm5C_site_15224 DeepMRMD:1;iRNA_m5C:0.999544487457351 not specified not specified 15225 chr19 11105608 11105608 1 + T C rs7935 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ACGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG < 41bp 1 0.660867964669002 1 0.659475326538086 experiment 0.678264070661996 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105608 synonymous SNV . 0 2 hm5C_associated_SNPs_13328 2 0 1 0 1 Nucleus 1 0.500231643921093 0.681049346923828 0.999536712157815 hm5C_site_15225 DeepMRMD:0.681049346923828;iRNA_m5C:0.999536712157815 not specified not specified 15226 chr19 11123738 11123738 1 + C T rs28997580 11123747 + 11123727 11123767 41 ATCACGTACCTCATGGAGCACAAACGCATCAATGGGCCCTT ATCACGTACCTTATGGAGCACAAACGCATCAATGGGCCCTT < 41bp 1 0.143761652454941 1 0.0921593904495239 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11123747 chr19:11123738 synonymous SNV . 0 12 hm5C_associated_SNPs_13329 3 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15226 DeepMRMD:1;iRNA_m5C:0.999536712157815 Rhabdoid tumor predisposition syndrome 2 Rhabdoid tumor predisposition syndrome 2 15227 chr19 11145649 11145649 1 + C G rs377720149 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TGATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC < 41bp 1 0.0801047150169882 1 0.114065885543823 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145649 synonymous SNV . 0 2 hm5C_associated_SNPs_13330 0 0 1 0 1 Nucleus 1 0.500231643863821 1 0.999536712272358 hm5C_site_15227 DeepMRMD:1;iRNA_m5C:0.999536712272358 15228 chr19 11145649 11145649 1 + C G rs377720149 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG GATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG < 41bp 1 0.233671459424592 1 0.183198243379593 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145649 synonymous SNV . 0 1 hm5C_associated_SNPs_13331 0 0 1 0 1 Nucleus 1 0.500231188688801 1 0.999537622622397 hm5C_site_15228 DeepMRMD:1;iRNA_m5C:0.999537622622397 15229 chr19 11145691 11145691 1 + C T rs28997582 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGATG < 41bp 1 0.617362234420734 1 0.540599822998047 experiment 0.765275531158532 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145691 synonymous SNV . 0 40 hm5C_associated_SNPs_13332 2 0 1 0 0 Nucleus 1 0.500231643926302 0.918800354003906 0.999536712147396 hm5C_site_15229 DeepMRMD:0.918800354003906;iRNA_m5C:0.999536712147396 not specified not specified 15230 chr19 11145691 11145691 1 + C T rs28997582 11145704 + 11145684 11145724 41 AGGACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG AGGACGATGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG < 41bp 1 0.502773936541823 1 0.522314071655273 experiment 0.994452126916354 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145704 chr19:11145691 synonymous SNV . 0 8 hm5C_associated_SNPs_13333 2 0 1 0 0 Nucleus 1 0.50023164392107 0.955371856689454 0.999536712157859 hm5C_site_15230 DeepMRMD:0.955371856689454;iRNA_m5C:0.999536712157859 not specified not specified 15231 chr19 11145691 11145691 1 + C T rs28997582 11145707 + 11145687 11145727 41 ACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG ACGATGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG < 41bp 1 0.227121125874893 1 0.438113957643509 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145707 chr19:11145691 synonymous SNV . 0 5 hm5C_associated_SNPs_13334 2 0 1 0 0 Nucleus 1 0.500231644039381 1 0.999536711921238 hm5C_site_15231 DeepMRMD:1;iRNA_m5C:0.999536711921238 not specified not specified 15232 chr19 11242005 11242005 1 + A G rs72658871 11242009 + 11241989 11242029 41 GTGAACATCTGCCTGGAGTCCCGTCCCTGCCCAGAACCCTT GTGAACATCTGCCTGGGGTCCCGTCCCTGCCCAGAACCCTT < 41bp 1 0.0799558796173325 1 0.229893982410431 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11242009 chr19:11242005 synonymous SNV . 0 17 hm5C_associated_SNPs_13335 1 0 1 0 2 Endoplasmic reticulum 1 0.500231644214001 1 0.999536711571998 hm5C_site_15232 DeepMRMD:1;iRNA_m5C:0.999536711571998 Familial hypercholesterolemia Familial hypercholesterolemia 15233 chr19 11243409 11243409 1 + A C rs72658878 11243411 + 11243391 11243431 41 TCCGTCTCAAAAAAAAAAAACAAAAAAAAACCATGCATGGT TCCGTCTCAAAAAAAAAACACAAAAAAAAACCATGCATGGT < 41bp 1 0.599225437063837 1 0.558734118938446 experiment 0.801549125872326 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control LDLR ENSG00000130164 UTR3 Human protein_coding chr19:11243411 chr19:11243409 . . 0 19 hm5C_associated_SNPs_13336 0 0 0 0 0 Endoplasmic reticulum 1 0.500231691082587 0.882531762123108 0.999536617834826 hm5C_site_15233 DeepMRMD:0.882531762123108;iRNA_m5C:0.999536617834826 15234 chr19 11243422 11243422 1 + C A rs7254521 11243411 + 11243391 11243431 41 TCCGTCTCAAAAAAAAAAAACAAAAAAAAACCATGCATGGT TCCGTCTCAAAAAAAAAAAACAAAAAAAAACAATGCATGGT < 41bp 1 0.640371193492801 1 0.651468396186829 experiment 0.719257613014398 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control LDLR ENSG00000130164 UTR3 Human protein_coding chr19:11243411 chr19:11243422 . . 0 32 hm5C_associated_SNPs_13337 0 0 0 0 0 Endoplasmic reticulum 1 0.500231642429325 0.697063207626342 0.99953671514135 hm5C_site_15234 DeepMRMD:0.697063207626342;iRNA_m5C:0.99953671514135 15235 chr19 11553281 11553281 1 + T C rs62638749 11553280 + 11553260 11553300 41 GCGGACAGTGAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGG GCGGACAGTGAAGGAGGAAGCCGAGAAGCCAGAGAGAGAGG < 41bp 1 0.494311556746963 1 0.514611899852753 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553280 chr19:11553281 synonymous SNV . 0 22 hm5C_associated_SNPs_13338 2 0 1 0 2 Nucleus 1 0.500232406275538 0.970776200294494 0.999535187448924 hm5C_site_15235 DeepMRMD:0.970776200294494;iRNA_m5C:0.999535187448924 not specified not specified 15236 chr19 11553281 11553281 1 + T C rs62638749 11553289 + 11553269 11553309 41 GAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGGCCAAAGAGC GAAGGAGGAAGCCGAGAAGCCAGAGAGAGAGGCCAAAGAGC < 41bp 1 0.655672164622149 1 0.765582799911499 experiment 0.688655670755703 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553289 chr19:11553281 synonymous SNV . 0 13 hm5C_associated_SNPs_13340 2 0 1 0 2 Nucleus 1 0.500226729470747 0.468834400177002 0.999546541058507 hm5C_site_15236 DeepMRMD:0.468834400177002;iRNA_m5C:0.999546541058507 not specified not specified 15237 chr19 12014739 12014739 1 + G A rs141687609 12014742 + 12014722 12014762 41 AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAAAA AAAAGTTGGAAAGACCAAAACATTGAATATGAGTACCAAAA < 41bp 1 0.146984359771516 1 0.198817074298859 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014742 chr19:12014739 synonymous SNV . 0 18 hm5C_associated_SNPs_13342 0 0 0 0 2 Nucleus 1 0.500231601729956 1 0.999536796540088 hm5C_site_15237 DeepMRMD:1;iRNA_m5C:0.999536796540088 15238 chr19 12024882 12024882 1 + C T rs143204877 12024901 + 12024881 12024921 41 GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTCA GTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTCA < 41bp 1 0.48216702319324 1 0.097851574420929 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF69 ENSG00000198429 UTR3 Human protein_coding chr19:12024901 chr19:12024882 . . 0 2 hm5C_associated_SNPs_13343 0 0 0 0 0 Nucleus 1 0.500231643960596 1 0.999536712078809 hm5C_site_15238 DeepMRMD:1;iRNA_m5C:0.999536712078809 15239 chr19 12024888 12024888 1 + C G rs148241296 12024901 + 12024881 12024921 41 GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTCA GCTCACGGCTGTAATCCCAGCACTTTGGGAGGCCGAGGTCA < 41bp 1 0.576598437150487 1 0.112960815429688 experiment 0.846803125699026 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF69 ENSG00000198429 UTR3 Human protein_coding chr19:12024901 chr19:12024888 . . 0 8 hm5C_associated_SNPs_13344 0 0 0 0 0 Nucleus 1 0.500231643921091 1 0.999536712157819 hm5C_site_15239 DeepMRMD:1;iRNA_m5C:0.999536712157819 15240 chr19 12024906 12024906 1 + T A rs557903487 12024901 + 12024881 12024921 41 GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTCA GCTCACGCCTGTAATCCCAGCACTTAGGGAGGCCGAGGTCA < 41bp 1 0.503526121381027 1 0.0763824582099915 experiment 0.992947757237946 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF69 ENSG00000198429 UTR3 Human protein_coding chr19:12024901 chr19:12024906 . . 0 26 hm5C_associated_SNPs_13345 0 0 0 0 0 Nucleus 1 0.500231655417386 1 0.999536689165228 hm5C_site_15240 DeepMRMD:1;iRNA_m5C:0.999536689165228 15241 chr19 12902831 12902831 1 + C T rs558783117 12902850 + 12902830 12902870 41 TCGCCTCTTCGGAGCTGGAACGCCTGATTGTCCCCAACAGC TTGCCTCTTCGGAGCTGGAACGCCTGATTGTCCCCAACAGC < 41bp 1 0.408954955358049 1 0.156597912311554 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control JUNB ENSG00000171223 CDS Human protein_coding chr19:12902850 chr19:12902831 synonymous SNV . 0 2 hm5C_associated_SNPs_13347 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15241 DeepMRMD:1;iRNA_m5C:0.999536712157815 15242 chr19 12903059 12903059 1 + C A rs2229510 12903078 + 12903058 12903098 41 CCCTGGGCGCTACCGGGGGGCCCCCGGCTGGGCCCGGGGGC CACTGGGCGCTACCGGGGGGCCCCCGGCTGGGCCCGGGGGC < 41bp 1 0.18753610805151 1 0.186268419027328 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control JUNB ENSG00000171223 CDS Human protein_coding chr19:12903078 chr19:12903059 synonymous SNV . 0 2 hm5C_associated_SNPs_13348 0 0 1 0 0 Cytosol 1 0.500231631564639 1 0.999536736870722 hm5C_site_15242 DeepMRMD:1;iRNA_m5C:0.999536736870722 15243 chr19 12903059 12903059 1 + C A rs2229510 12903079 + 12903059 12903099 41 CCTGGGCGCTACCGGGGGGCCCCCGGCTGGGCCCGGGGGCG ACTGGGCGCTACCGGGGGGCCCCCGGCTGGGCCCGGGGGCG < 41bp 1 0.543930461073197 1 0.507549524307251 experiment 0.912139077853606 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control JUNB ENSG00000171223 CDS Human protein_coding chr19:12903079 chr19:12903059 synonymous SNV . 0 1 hm5C_associated_SNPs_13349 0 0 1 0 0 Cytosol 1 0.500231643929544 0.984900951385498 0.999536712140913 hm5C_site_15243 DeepMRMD:0.984900951385498;iRNA_m5C:0.999536712140913 15244 chr19 12903106 12903106 1 + C G rs530685477 12903098 + 12903078 12903118 41 CCCCCGGCTGGGCCCGGGGGCGTCTACGCCGGCCCGGAGCC CCCCCGGCTGGGCCCGGGGGCGTCTACGGCGGCCCGGAGCC < 41bp 1 0.268401433927623 1 0.479060232639313 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control JUNB ENSG00000171223 CDS Human protein_coding chr19:12903098 chr19:12903106 nonsynonymous SNV 0.851 0 29 hm5C_associated_SNPs_13350 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15244 DeepMRMD:1;iRNA_m5C:0.999536712157815 15245 chr19 12923943 12923943 1 + C T rs147131347 12923946 + 12923926 12923966 41 CACGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTT CACGTGGAGCCTGTGTTTGGCTTCCCCCAGTTTGTCCGGTT < 41bp 1 0.162295872250755 1 0.0710262358188629 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12923946 chr19:12923943 synonymous SNV . 0 18 hm5C_associated_SNPs_13351 0 0 1 0 2 Ribosome 1 0.500231643876147 1 0.999536712247706 hm5C_site_15245 DeepMRMD:1;iRNA_m5C:0.999536712247706 15246 chr19 13010516 13010516 1 + G A rs113720193 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCATTCAGATGTGTTCCTTAAAAAGA < 41bp 1 0.470172972424154 1 0.503603160381317 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010516 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_13352 0 0 1 1 1 Ribosome 1 0.500231646381338 0.992793679237366 0.999536707237324 hm5C_site_15246 DeepMRMD:0.992793679237366;iRNA_m5C:0.999536707237324 15247 chr19 13010520 13010520 1 + A G rs8012 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCGTTCGGATGTGTTCCTTAAAAAGA < 41bp 1 0.409785217854589 1 0.405917853116989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010520 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_13353 2 1 1 1 1 Ribosome 1 0.500231643922263 1 0.999536712155474 hm5C_site_15247 DeepMRMD:1;iRNA_m5C:0.999536712155474 Glutaric aciduria, type 1 Glutaric aciduria, type 1 15248 chr19 13049446 13049446 1 + G A rs374628652 13049438 + 13049418 13049458 41 CGTCCGTCCGTACTGCAGAGCCGCTGCCGGAGGGTCGTTTT CGTCCGTCCGTACTGCAGAGCCGCTGCCAGAGGGTCGTTTT < 41bp 1 0.32995454886633 1 0.0384173691272736 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CALR ENSG00000179218 UTR5 Human protein_coding chr19:13049438 chr19:13049446 . . 0 29 hm5C_associated_SNPs_13354 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_15248 DeepMRMD:1;iRNA_m5C:0.999536712157814 15249 chr19 13051170 13051170 1 + C G rs79497711 13051158 + 13051138 13051178 41 GAGTCCGGCTCCTTGGAAGACGATTGGGACTTCCTGCCACC GAGTCCGGCTCCTTGGAAGACGATTGGGACTTGCTGCCACC < 41bp 1 0.334613868041227 1 0.546430230140686 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051158 chr19:13051170 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_13356 0 0 1 0 1 Ribosome 1 0.500231643921093 0.907139539718628 0.999536712157815 hm5C_site_15249 DeepMRMD:0.907139539718628;iRNA_m5C:0.999536712157815 15250 chr19 13051170 13051170 1 + C G rs79497711 13051171 + 13051151 13051191 41 TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAG TGGAAGACGATTGGGACTTGCTGCCACCCAAGAAGATAAAG < 41bp 1 0.331920717308269 1 0.180354535579681 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051171 chr19:13051170 nonsynonymous SNV 0.994 1 20 hm5C_associated_SNPs_13357 0 0 1 0 1 Ribosome 1 0.500231376941428 1 0.999537246117144 hm5C_site_15250 DeepMRMD:1;iRNA_m5C:0.999537246117144 15251 chr19 13051170 13051170 1 + C G rs79497711 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTGCTGCCACCCAAGAAGATAAAGGATC < 41bp 1 0.394833471703001 1 0.134887158870697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051170 nonsynonymous SNV 0.994 1 16 hm5C_associated_SNPs_13358 0 0 1 0 1 Ribosome 1 0.500231643808935 1 0.99953671238213 hm5C_site_15251 DeepMRMD:1;iRNA_m5C:0.99953671238213 15252 chr19 13051188 13051188 1 + A G rs534189742 13051171 + 13051151 13051191 41 TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAG TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATGAAG < 41bp 1 0.364402948365459 1 0.286785662174225 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051171 chr19:13051188 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_13359 0 0 1 0 1 Ribosome 1 0.500231643797059 1 0.999536712405882 hm5C_site_15252 DeepMRMD:1;iRNA_m5C:0.999536712405882 15253 chr19 13051188 13051188 1 + A G rs534189742 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTCCTGCCACCCAAGAAGATGAAGGATC < 41bp 1 0.39252243420242 1 0.0988755226135254 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051188 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_13360 0 0 1 0 1 Ribosome 1 0.500231644083913 1 0.999536711832174 hm5C_site_15253 DeepMRMD:1;iRNA_m5C:0.999536711832174 15254 chr19 13051212 13051212 1 + G A rs200486676 13051210 + 13051190 13051230 41 AGGATCCTGATGCTTCAAAACCGGAAGACTGGGATGAGCGG AGGATCCTGATGCTTCAAAACCAGAAGACTGGGATGAGCGG < 41bp 1 0.618179290643952 1 0.256723165512085 experiment 0.763641418712095 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051210 chr19:13051212 synonymous SNV . 0 23 hm5C_associated_SNPs_13361 0 0 1 0 1 Ribosome 1 0.50023164392112 1 0.999536712157761 hm5C_site_15254 DeepMRMD:1;iRNA_m5C:0.999536712157761 15255 chr19 13054401 13054401 1 + A G rs140610430 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCGTACGCTGAGGAGTTTGGCAACGA < 41bp 1 0.507028281735713 1 0.113809049129486 experiment 0.985943436528575 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054401 synonymous SNV . 0 18 hm5C_associated_SNPs_13362 0 0 1 0 2 Ribosome 1 0.500235728858815 1 0.999528542282369 hm5C_site_15255 DeepMRMD:1;iRNA_m5C:0.999528542282369 15256 chr19 13054401 13054401 1 + A G rs140610430 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCGTACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC < 41bp 1 0.634340048632636 1 0.765494525432587 experiment 0.731319902734728 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054401 synonymous SNV . 0 3 hm5C_associated_SNPs_13364 0 0 1 0 2 Ribosome 1 0.500231629762701 0.469010949134826 0.999536740474598 hm5C_site_15256 DeepMRMD:0.469010949134826;iRNA_m5C:0.999536740474598 15257 chr19 13054615 13054615 1 + A C rs143880510 13054601 + 13054581 13054621 41 GAGGAAGAAGACAAGAAACGCAAAGAGGAGGAGGAGGCAGA GAGGAAGAAGACAAGAAACGCAAAGAGGAGGAGGCGGCAGA < 41bp 1 0.599484554834281 1 0.574181497097015 experiment 0.801030890331439 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054601 chr19:13054615 nonsynonymous SNV 0.975 1 35 hm5C_associated_SNPs_13365 0 0 1 0 1 Ribosome 1 0.500231644513421 0.85163700580597 0.999536710973158 hm5C_site_15257 DeepMRMD:0.85163700580597;iRNA_m5C:0.999536710973158 15258 chr19 13056734 13056734 1 + C T rs45628632 13056739 + 13056719 13056759 41 GTTGTGTGAGGATCCCGGGGCCGCCGCGTCGCTCGGGCCCC GTTGTGTGAGGATCCTGGGGCCGCCGCGTCGCTCGGGCCCC < 41bp 1 0.429483277054711 1 0.200983047485352 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RAD23A ENSG00000179262 UTR5 Human protein_coding chr19:13056739 chr19:13056734 . . 0 16 hm5C_associated_SNPs_13366 0 0 1 0 0 Ribosome 1 0.500231643924101 1 0.999536712151797 hm5C_site_15258 DeepMRMD:1;iRNA_m5C:0.999536712151797 15259 chr19 13206824 13206824 1 + C T rs555432273 13206816 + 13206796 13206836 41 ACACACCACAGGAAGTAGCTCTCCCCCCCAGCCCCCTCCTC ACACACCACAGGAAGTAGCTCTCCCCCCTAGCCCCCTCCTC < 41bp 1 0.247784456067446 1 0.471377342939377 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NFIX ENSG00000008441 UTR3 Human protein_coding chr19:13206816 chr19:13206824 . . 0 29 hm5C_associated_SNPs_13367 0 0 1 0 0 Ribosome 1 0.500231643921064 1 0.999536712157873 hm5C_site_15259 DeepMRMD:1;iRNA_m5C:0.999536712157873 15260 chr19 13206824 13206824 1 + C T rs555432273 13206818 + 13206798 13206838 41 ACACCACAGGAAGTAGCTCTCCCCCCCAGCCCCCTCCTCCC ACACCACAGGAAGTAGCTCTCCCCCCTAGCCCCCTCCTCCC < 41bp 1 0.285196450354125 1 0.0544464886188507 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NFIX ENSG00000008441 UTR3 Human protein_coding chr19:13206818 chr19:13206824 . . 0 27 hm5C_associated_SNPs_13368 0 0 1 0 0 Ribosome 1 0.500231643921089 1 0.999536712157822 hm5C_site_15260 DeepMRMD:1;iRNA_m5C:0.999536712157822 15261 chr19 13843084 13843084 1 + A G rs147584625 13843079 + 13843059 13843099 41 AGAGGCCCACCCTGGAGTAACCCTCACTGGAGAATCCAGAG AGAGGCCCACCCTGGAGTAACCCTCGCTGGAGAATCCAGAG < 41bp 1 0.0618235393757055 1 0.138804525136948 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 UTR5 Human protein_coding chr19:13843079 chr19:13843084 . . 0 26 hm5C_associated_SNPs_13369 0 0 1 0 2 Cytosol 1 0.500231644066034 1 0.999536711867931 hm5C_site_15261 DeepMRMD:1;iRNA_m5C:0.999536711867931 15262 chr19 13869887 13869887 1 + A C rs367784673 13869880 + 13869860 13869900 41 GCCCTGAGTCTGCGCTGGGGCCCCCAAAGCCCAGCCGAGCT GCCCTGAGTCTGCGCTGGGGCCCCCAACGCCCAGCCGAGCT < 41bp 1 0.11314853261233 1 0.0487831234931946 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869880 chr19:13869887 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_13370 0 0 1 0 0 Cytosol 1 0.500231646313777 1 0.999536707372445 hm5C_site_15262 DeepMRMD:1;iRNA_m5C:0.999536707372445 15263 chr19 13869887 13869887 1 + A C rs367784673 13869881 + 13869861 13869901 41 CCCTGAGTCTGCGCTGGGGCCCCCAAAGCCCAGCCGAGCTC CCCTGAGTCTGCGCTGGGGCCCCCAACGCCCAGCCGAGCTC < 41bp 1 0.39780078856319 1 0.179655700922012 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869881 chr19:13869887 nonsynonymous SNV 0.001 0 27 hm5C_associated_SNPs_13371 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_15263 DeepMRMD:1;iRNA_m5C:0.999536712157816 15264 chr19 13869887 13869887 1 + A C rs367784673 13869882 + 13869862 13869902 41 CCTGAGTCTGCGCTGGGGCCCCCAAAGCCCAGCCGAGCTCT CCTGAGTCTGCGCTGGGGCCCCCAACGCCCAGCCGAGCTCT < 41bp 1 0.278688218916106 1 0.147364765405655 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869882 chr19:13869887 nonsynonymous SNV 0.001 0 26 hm5C_associated_SNPs_13372 0 0 1 0 0 Cytosol 1 0.500231644192031 1 0.999536711615939 hm5C_site_15264 DeepMRMD:1;iRNA_m5C:0.999536711615939 15265 chr19 13869887 13869887 1 + A C rs367784673 13869883 + 13869863 13869903 41 CTGAGTCTGCGCTGGGGCCCCCAAAGCCCAGCCGAGCTCTG CTGAGTCTGCGCTGGGGCCCCCAACGCCCAGCCGAGCTCTG < 41bp 1 0.0768007293727978 1 0.458766102790833 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869883 chr19:13869887 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_13373 0 0 1 0 0 Cytosol 1 0.500231643920015 1 0.99953671215997 hm5C_site_15265 DeepMRMD:1;iRNA_m5C:0.99953671215997 15266 chr19 13869887 13869887 1 + A C rs367784673 13869884 + 13869864 13869904 41 TGAGTCTGCGCTGGGGCCCCCAAAGCCCAGCCGAGCTCTGA TGAGTCTGCGCTGGGGCCCCCAACGCCCAGCCGAGCTCTGA < 41bp 1 0.294408635604657 1 0.322276294231415 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869884 chr19:13869887 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_13374 0 0 1 0 0 Cytosol 1 0.500231646494204 1 0.999536707011593 hm5C_site_15266 DeepMRMD:1;iRNA_m5C:0.999536707011593 15267 chr19 13884080 13884080 1 + C G rs574897910 13884070 + 13884050 13884090 41 TGACTCAAATGATCCCCCTGCCTCAGCCTCCCAAAGTGCTG TGACTCAAATGATCCCCCTGCCTCAGCCTCGCAAAGTGCTG < 41bp 1 0.231126689767906 1 0.115579307079315 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_exonic Human antisense chr19:13884070 chr19:13884080 . . 0 31 hm5C_associated_SNPs_13377 0 0 0 0 0 Ribosome 1 0.500231644371899 1 0.999536711256201 hm5C_site_15267 DeepMRMD:1;iRNA_m5C:0.999536711256201 15268 chr19 13884080 13884080 1 + C G rs574897910 13884071 + 13884051 13884091 41 GACTCAAATGATCCCCCTGCCTCAGCCTCCCAAAGTGCTGG GACTCAAATGATCCCCCTGCCTCAGCCTCGCAAAGTGCTGG < 41bp 1 0.494309722306782 1 0.141735911369324 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_exonic Human antisense chr19:13884071 chr19:13884080 . . 0 30 hm5C_associated_SNPs_13378 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15268 DeepMRMD:1;iRNA_m5C:0.999536712157815 15269 chr19 13884080 13884080 1 + C G rs574897910 13884073 + 13884053 13884093 41 CTCAAATGATCCCCCTGCCTCAGCCTCCCAAAGTGCTGGGA CTCAAATGATCCCCCTGCCTCAGCCTCGCAAAGTGCTGGGA < 41bp 1 0.555905816278519 1 0.443839520215988 experiment 0.888188367442962 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_exonic Human antisense chr19:13884073 chr19:13884080 . . 0 28 hm5C_associated_SNPs_13379 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15269 DeepMRMD:1;iRNA_m5C:0.999536712157815 15270 chr19 13884080 13884080 1 + C G rs574897910 13884076 + 13884056 13884096 41 AAATGATCCCCCTGCCTCAGCCTCCCAAAGTGCTGGGACTA AAATGATCCCCCTGCCTCAGCCTCGCAAAGTGCTGGGACTA < 41bp 1 0.154775608812998 1 0.320990473031998 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_exonic Human antisense chr19:13884076 chr19:13884080 . . 0 25 hm5C_associated_SNPs_13380 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15270 DeepMRMD:1;iRNA_m5C:0.999536712157815 15271 chr19 13884080 13884080 1 + C G rs574897910 13884077 + 13884057 13884097 41 AATGATCCCCCTGCCTCAGCCTCCCAAAGTGCTGGGACTAC AATGATCCCCCTGCCTCAGCCTCGCAAAGTGCTGGGACTAC < 41bp 1 0.479288384811935 1 0.184565603733063 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_exonic Human antisense chr19:13884077 chr19:13884080 . . 0 24 hm5C_associated_SNPs_13381 0 0 0 0 0 Ribosome 1 0.500231643906307 1 0.999536712187385 hm5C_site_15271 DeepMRMD:1;iRNA_m5C:0.999536712187385 15272 chr19 13884080 13884080 1 + C G rs574897910 13884079 + 13884059 13884099 41 TGATCCCCCTGCCTCAGCCTCCCAAAGTGCTGGGACTACAG TGATCCCCCTGCCTCAGCCTCGCAAAGTGCTGGGACTACAG < 41bp 1 0.696501478078178 1 0.36078006029129 experiment 0.606997043843643 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_exonic Human antisense chr19:13884079 chr19:13884080 . . 0 22 hm5C_associated_SNPs_13382 0 0 0 0 0 Ribosome 1 0.500231643928465 1 0.99953671214307 hm5C_site_15272 DeepMRMD:1;iRNA_m5C:0.99953671214307 15273 chr19 13884080 13884080 1 + C G rs574897910 13884081 + 13884061 13884101 41 ATCCCCCTGCCTCAGCCTCCCAAAGTGCTGGGACTACAGGC ATCCCCCTGCCTCAGCCTCGCAAAGTGCTGGGACTACAGGC < 41bp 1 0.59061471094624 1 0.3801189661026 experiment 0.81877057810752 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_exonic Human antisense chr19:13884081 chr19:13884080 . . 0 20 hm5C_associated_SNPs_13383 0 0 0 0 0 Ribosome 1 0.500231643922609 1 0.999536712154783 hm5C_site_15273 DeepMRMD:1;iRNA_m5C:0.999536712154783 15274 chr19 13884586 13884586 1 + C G rs147089928 13884585 + 13884565 13884605 41 GGGTTCAAGCGACTCTCCTGCCTCAGCCTCCCGAGTAGCTG GGGTTCAAGCGACTCTCCTGCGTCAGCCTCCCGAGTAGCTG < 41bp 1 0.538646452971075 1 0.225067973136902 experiment 0.922707094057851 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_intronic Human antisense chr19:13884585 chr19:13884586 . . 0 22 hm5C_associated_SNPs_13384 0 0 1 0 0 Ribosome 1 0.500231643921081 1 0.999536712157837 hm5C_site_15274 DeepMRMD:1;iRNA_m5C:0.999536712157837 15275 chr19 13884586 13884586 1 + C G rs147089928 13884588 + 13884568 13884608 41 TTCAAGCGACTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGA TTCAAGCGACTCTCCTGCGTCAGCCTCCCGAGTAGCTGGGA < 41bp 1 0.432747114046016 1 0.685507655143738 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_intronic Human antisense chr19:13884588 chr19:13884586 . . 0 19 hm5C_associated_SNPs_13385 0 0 1 0 0 Ribosome 1 0.500231643921105 0.628984689712524 0.999536712157789 hm5C_site_15275 DeepMRMD:0.628984689712524;iRNA_m5C:0.999536712157789 15276 chr19 13884586 13884586 1 + C G rs147089928 13884591 + 13884571 13884611 41 AAGCGACTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTA AAGCGACTCTCCTGCGTCAGCCTCCCGAGTAGCTGGGATTA < 41bp 1 0.113292706894127 1 0.0759863555431366 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_intronic Human antisense chr19:13884591 chr19:13884586 . . 0 16 hm5C_associated_SNPs_13386 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15276 DeepMRMD:1;iRNA_m5C:0.999536712157815 15277 chr19 13884586 13884586 1 + C G rs147089928 13884592 + 13884572 13884612 41 AGCGACTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTAC AGCGACTCTCCTGCGTCAGCCTCCCGAGTAGCTGGGATTAC < 41bp 1 0.322955150959452 1 0.274484932422638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_intronic Human antisense chr19:13884592 chr19:13884586 . . 0 15 hm5C_associated_SNPs_13387 0 0 1 0 0 Ribosome 1 0.500233234965005 1 0.999533530069989 hm5C_site_15277 DeepMRMD:1;iRNA_m5C:0.999533530069989 15278 chr19 13884586 13884586 1 + C G rs147089928 13884594 + 13884574 13884614 41 CGACTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAG CGACTCTCCTGCGTCAGCCTCCCGAGTAGCTGGGATTACAG < 41bp 1 0.675034765156707 1 0.366263389587402 experiment 0.649930469686586 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_intronic Human antisense chr19:13884594 chr19:13884586 . . 0 13 hm5C_associated_SNPs_13388 0 0 1 0 0 Ribosome 1 0.500230931925973 1 0.999538136148054 hm5C_site_15278 DeepMRMD:1;iRNA_m5C:0.999538136148054 15279 chr19 13884586 13884586 1 + C G rs147089928 13884595 + 13884575 13884615 41 GACTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGG GACTCTCCTGCGTCAGCCTCCCGAGTAGCTGGGATTACAGG < 41bp 1 0.308487432680744 1 0.693210303783417 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_intronic Human antisense chr19:13884595 chr19:13884586 . . 0 12 hm5C_associated_SNPs_13389 0 0 1 0 0 Ribosome 1 0.500231643921093 0.613579392433166 0.999536712157815 hm5C_site_15279 DeepMRMD:0.613579392433166;iRNA_m5C:0.999536712157815 15280 chr19 13884586 13884586 1 + C G rs147089928 13884596 + 13884576 13884616 41 ACTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGA ACTCTCCTGCGTCAGCCTCCCGAGTAGCTGGGATTACAGGA < 41bp 1 0.663839605648047 1 0.628543972969055 experiment 0.672320788703907 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MRI1 ENSG00000267633 ncRNA_intronic Human antisense chr19:13884596 chr19:13884586 . . 0 11 hm5C_associated_SNPs_13390 0 0 1 0 0 Ribosome 1 0.500231639851057 0.74291205406189 0.999536720297886 hm5C_site_15280 DeepMRMD:0.74291205406189;iRNA_m5C:0.999536720297886 15281 chr19 14030642 14030642 1 + A G rs191830054 14030636 + 14030616 14030656 41 CGACTGGCCACCCAGGCTTCCCCCCAATCCAGGGCCTGGAG CGACTGGCCACCCAGGCTTCCCCCCAGTCCAGGGCCTGGAG < 41bp 1 0.0646634996910628 1 0.0391837656497955 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14030636 chr19:14030642 nonsynonymous SNV 0.973 2 27 hm5C_associated_SNPs_13394 2 0 1 0 1 chromatin 1 0.500231643921096 1 0.999536712157808 hm5C_site_15281 DeepMRMD:1;iRNA_m5C:0.999536712157808 not specified not specified 15282 chr19 14037648 14037648 1 + A G rs73925404 14037657 + 14037637 14037677 41 GAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA GAAGCTCAGAAGGACAAGACCAGTGTGATCAAGAACACAGA < 41bp 1 0.297525917096853 1 0.122420847415924 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14037657 chr19:14037648 synonymous SNV . 0 12 hm5C_associated_SNPs_13395 1 0 0 0 2 chromatin 1 0.500215807950008 1 0.999568384099983 hm5C_site_15282 DeepMRMD:1;iRNA_m5C:0.999568384099983 not specified not specified 15283 chr19 14142705 14142705 1 + C T rs113593439 14142724 + 14142704 14142744 41 CCCCTTTCTGGCTGTGGCCGCTGCCCAAGCTGGCGCTGCTG CTCCTTTCTGGCTGTGGCCGCTGCCCAAGCTGGCGCTGCTG < 41bp 1 0.358603137214667 1 0.413357883691788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14142724 chr19:14142705 synonymous SNV . 0 2 hm5C_associated_SNPs_13396 0 0 1 0 0 chromatin 1 0.500231643850163 1 0.999536712299673 hm5C_site_15283 DeepMRMD:1;iRNA_m5C:0.999536712299673 15284 chr19 14561832 14561832 1 + C T rs140044731 14561839 + 14561819 14561859 41 GAAGAGCTCGCTGCGGCCTCCTCCGCTGCCTTCAGCACCCG GAAGAGCTCGCTGTGGCCTCCTCCGCTGCCTTCAGCACCCG < 41bp 1 0.626145650072662 1 0.507423162460327 experiment 0.747708699854675 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561839 chr19:14561832 nonsynonymous SNV 0.100 0 14 hm5C_associated_SNPs_13397 0 0 1 0 1 Ribosome 1 0.500231643879089 0.985153675079346 0.999536712241821 hm5C_site_15284 DeepMRMD:0.985153675079346;iRNA_m5C:0.999536712241821 15285 chr19 14574937 14574937 1 + G A rs114585039 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTCGCAGGATCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.0557226432196962 1 0.0954462289810181 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574937 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_13398 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15285 DeepMRMD:1;iRNA_m5C:0.999536712157815 15286 chr19 14574959 14574959 1 + G A rs2230538 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCAAGC < 41bp 1 0.0574909384884429 1 0.215134829282761 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574959 synonymous SNV . 0 38 hm5C_associated_SNPs_13399 0 0 1 0 2 Ribosome 1 0.500231643903154 1 0.999536712193692 hm5C_site_15286 DeepMRMD:1;iRNA_m5C:0.999536712193692 15287 chr19 14580192 14580192 1 + T C rs199587903 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CAGTGACCAGCGCGGGACACCCCTTCCTGGTGAACCTCTTC < 41bp 1 0.0450302523406401 1 0.164615422487259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580192 synonymous SNV . 0 11 hm5C_associated_SNPs_13400 0 0 1 0 1 Ribosome 1 0.500231634036664 1 0.999536731926671 hm5C_site_15287 DeepMRMD:1;iRNA_m5C:0.999536731926671 15288 chr19 14580192 14580192 1 + T C rs199587903 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG AGTGACCAGCGCGGGACACCCCTTCCTGGTGAACCTCTTCG < 41bp 1 0.0203901231431754 1 0.124209403991699 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580192 synonymous SNV . 0 10 hm5C_associated_SNPs_13401 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15288 DeepMRMD:1;iRNA_m5C:0.999536712157815 15289 chr19 14580192 14580192 1 + T C rs199587903 14580207 + 14580187 14580227 41 ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG ACCAGCGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG < 41bp 1 0.425040032005589 1 0.706047594547272 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580207 chr19:14580192 synonymous SNV . 0 6 hm5C_associated_SNPs_13402 0 0 1 0 1 Ribosome 1 0.500231643921092 0.587904810905456 0.999536712157815 hm5C_site_15289 DeepMRMD:0.587904810905456;iRNA_m5C:0.999536712157815 15290 chr19 14580195 14580195 1 + G A rs114340231 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CAGTGACCAGTGCAGGACACCCCTTCCTGGTGAACCTCTTC < 41bp 1 0.0363896029276637 1 0.060499519109726 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580195 synonymous SNV . 0 14 hm5C_associated_SNPs_13403 0 0 1 0 1 Ribosome 1 0.500231641606235 1 0.99953671678753 hm5C_site_15290 DeepMRMD:1;iRNA_m5C:0.99953671678753 15291 chr19 14580195 14580195 1 + G A rs114340231 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG AGTGACCAGTGCAGGACACCCCTTCCTGGTGAACCTCTTCG < 41bp 1 0.0151917647410549 1 0.035011500120163 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580195 synonymous SNV . 0 13 hm5C_associated_SNPs_13404 0 0 1 0 1 Ribosome 1 0.50023164382473 1 0.999536712350541 hm5C_site_15291 DeepMRMD:1;iRNA_m5C:0.999536712350541 15292 chr19 14580195 14580195 1 + G A rs114340231 14580207 + 14580187 14580227 41 ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG ACCAGTGCAGGACACCCCTTCCTGGTGAACCTCTTCGGCTG < 41bp 1 0.372395092556646 1 0.615377068519592 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580207 chr19:14580195 synonymous SNV . 0 9 hm5C_associated_SNPs_13405 0 0 1 0 1 Ribosome 1 0.500231643921092 0.769245862960816 0.999536712157815 hm5C_site_15292 DeepMRMD:0.769245862960816;iRNA_m5C:0.999536712157815 15293 chr19 14675889 14675889 1 + C T rs59273619 14675880 + 14675860 14675900 41 ATCCTGCTTCTCTGACAGATCTGCCAGCTCGGCAACTTCTC ATCCTGCTTCTCTGACAGATCTGCCAGCTTGGCAACTTCTC < 41bp 1 0.489369834854654 1 0.265589833259583 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14675880 chr19:14675889 synonymous SNV . 0 30 hm5C_associated_SNPs_13406 1 0 1 0 2 Ribosome 1 0.500231643923 1 0.999536712153999 hm5C_site_15293 DeepMRMD:1;iRNA_m5C:0.999536712153999 not specified not specified 15294 chr19 15220969 15220969 1 + G C rs376968561 15220986 + 15220966 15221006 41 AGTGGATGGGGAGGCCAGGGCCCGAACAGGGCCACTGCGAG AGTCGATGGGGAGGCCAGGGCCCGAACAGGGCCACTGCGAG < 41bp 1 0.63824281189107 1 0.703405022621155 experiment 0.72351437621786 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15220986 chr19:15220969 synonymous SNV . 0 4 hm5C_associated_SNPs_13407 0 0 0 0 0 exosome 1 0.500231643993018 0.59318995475769 0.999536712013964 hm5C_site_15294 DeepMRMD:0.59318995475769;iRNA_m5C:0.999536712013964 15295 chr19 15222231 15222231 1 + C T rs145641624 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCTGAGGACCTGTACCCTGATATCAATGT < 41bp 1 0.0445485099432676 1 0.0364526808261871 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222231 synonymous SNV . 0 30 hm5C_associated_SNPs_13408 0 0 0 0 1 exosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_15295 DeepMRMD:1;iRNA_m5C:0.999536712157818 15296 chr19 15662372 15662372 1 + C A rs76748339 15662363 + 15662343 15662383 41 CGCCCCAAAGATCCCGAGGGCATAGGCCACCCCCCTCGAAG CGCCCCAAAGATCCCGAGGGCATAGGCCAACCCCCTCGAAG < 41bp 1 0.40819781081139 1 0.208744078874588 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYP4F22 ENSG00000171954 UTR3 Human protein_coding chr19:15662363 chr19:15662372 . . 0 30 hm5C_associated_SNPs_13409 1 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15296 DeepMRMD:1;iRNA_m5C:0.999536712157815 Congenital ichthyosiform erythroderma Congenital ichthyosiform erythroderma 15297 chr19 16243761 16243761 1 + G A rs182397992 16243766 + 16243746 16243786 41 GGAAAGAAGCCTGGAGCAGCCTCTCCTGTCCACAGCCAGGG GGAAAGAAGCCTGGAACAGCCTCTCCTGTCCACAGCCAGGG < 41bp 1 0.304341575125579 1 0.0736166834831238 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB8A ENSG00000269243 ncRNA_exonic Human antisense chr19:16243766 chr19:16243761 . . 0 16 hm5C_associated_SNPs_13410 0 0 1 1 0 Ribosome 1 0.500231643909657 1 0.999536712180686 hm5C_site_15297 DeepMRMD:1;iRNA_m5C:0.999536712180686 15298 chr19 16314386 16314386 1 + G A rs141457321 16314393 + 16314373 16314413 41 TCCTGGCCCACGGGGGGGTCCGTTTCATGTGGATCAAACAC TCCTGGCCCACGGAGGGGTCCGTTTCATGTGGATCAAACAC < 41bp 1 0.0723848416900828 1 0.0837595760822296 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16314393 chr19:16314386 synonymous SNV . 0 14 hm5C_associated_SNPs_13411 0 0 1 0 1 Ribosome 1 0.500231811419351 1 0.999536377161298 hm5C_site_15298 DeepMRMD:1;iRNA_m5C:0.999536377161298 15299 chr19 16799575 16799575 1 + G A rs188996215 16799556 + 16799536 16799576 41 GCTCATGCCTATAATCCTAGCACTTTGGGAGGCCGAGGCGG GCTCATGCCTATAATCCTAGCACTTTGGGAGGCCGAGGCAG < 41bp 1 0.379888634335637 1 0.0297673642635345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38A ENSG00000072954 UTR3 Human protein_coding chr19:16799556 chr19:16799575 . . 0 40 hm5C_associated_SNPs_13412 0 0 0 1 0 Ribosome 1 0.500231647055415 1 0.99953670588917 hm5C_site_15299 DeepMRMD:1;iRNA_m5C:0.99953670588917 15300 chr19 16799575 16799575 1 + G A rs188996215 16799558 + 16799538 16799578 41 TCATGCCTATAATCCTAGCACTTTGGGAGGCCGAGGCGGGC TCATGCCTATAATCCTAGCACTTTGGGAGGCCGAGGCAGGC < 41bp 1 0.237959091262853 1 0.101288676261902 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM38A ENSG00000072954 UTR3 Human protein_coding chr19:16799558 chr19:16799575 . . 0 38 hm5C_associated_SNPs_13413 0 0 0 1 0 Ribosome 1 0.500231643934257 1 0.999536712131486 hm5C_site_15300 DeepMRMD:1;iRNA_m5C:0.999536712131486 15301 chr19 16962292 16962292 1 + A G rs61754499 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC CCCCGGAGCACGGCAGGAAGCGCTCCCGGCCCTCGCTCCTC < 41bp 1 0.373568580669639 1 0.383658438920975 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962292 nonsynonymous SNV 0.601 0 12 hm5C_associated_SNPs_13415 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_15301 DeepMRMD:1;iRNA_m5C:0.999536712157814 15302 chr19 16990451 16990451 1 + C T rs527864176 16990450 + 16990430 16990470 41 CCTTTGTGGAACTCCGAGAGCCGCCCTGACAGTCCCAGCCG CCTTTGTGGAACTCCGAGAGCTGCCCTGACAGTCCCAGCCG < 41bp 1 0.689988205906633 1 0.0353815853595734 experiment 0.620023588186734 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SIN3B ENSG00000127511 UTR3 Human protein_coding chr19:16990450 chr19:16990451 . . 0 22 hm5C_associated_SNPs_13416 0 0 1 0 0 Cytosol 1 0.500231641694967 1 0.999536716610067 hm5C_site_15302 DeepMRMD:1;iRNA_m5C:0.999536716610067 15303 chr19 16990470 16990470 1 + G A rs548015343 16990450 + 16990430 16990470 41 CCTTTGTGGAACTCCGAGAGCCGCCCTGACAGTCCCAGCCG CCTTTGTGGAACTCCGAGAGCCGCCCTGACAGTCCCAGCCA < 41bp 1 0.484536463984828 1 0.0420922636985779 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SIN3B ENSG00000127511 UTR3 Human protein_coding chr19:16990450 chr19:16990470 . . 0 41 hm5C_associated_SNPs_13417 0 0 1 0 0 Cytosol 1 0.500232516752295 1 0.999534966495409 hm5C_site_15303 DeepMRMD:1;iRNA_m5C:0.999534966495409 15304 chr19 17316782 17316782 1 + T C rs7248508 17316775 + 17316755 17316795 41 CCCCGGCACTGCAGGGCGAGCCAGGCGTTGAGCCTGGCCAC CCCCGGCACTGCAGGGCGAGCCAGGCGCTGAGCCTGGCCAC < 41bp 1 0.246848123740964 1 0.623004972934723 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17316775 chr19:17316782 nonsynonymous SNV 0.005 1 28 hm5C_associated_SNPs_13418 0 0 1 0 1 Nucleus 1 0.500231643921092 0.753990054130554 0.999536712157815 hm5C_site_15304 DeepMRMD:0.753990054130554;iRNA_m5C:0.999536712157815 15305 chr19 17322800 17322800 1 + T C rs117297085 17322803 + 17322783 17322823 41 AAGGCCGTCGTCCTTCGTAACGGTCAGAGTGAAGACCCCCC AAGGCCGTCGTCCTTCGCAACGGTCAGAGTGAAGACCCCCC < 41bp 1 0.141119099570083 1 0.196796476840973 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17322803 chr19:17322800 nonsynonymous SNV 0.924 1 18 hm5C_associated_SNPs_13419 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15305 DeepMRMD:1;iRNA_m5C:0.999536712157815 15306 chr19 17323366 17323366 1 + C T rs150928154 17323349 + 17323329 17323369 41 ATGGACGCACCTGTGGGGAGCACCACATCTCCACCTGCGGC ATGGACGCACCTGTGGGGAGCACCACATCTCCACCTGTGGC < 41bp 1 0.402709178391969 1 0.457244694232941 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYO9B ENSG00000099331 UTR3 Human protein_coding chr19:17323349 chr19:17323366 . . 0 38 hm5C_associated_SNPs_13420 0 0 1 3 0 Nucleus 1 0.500231643915146 1 0.999536712169708 hm5C_site_15306 DeepMRMD:1;iRNA_m5C:0.999536712169708 15307 chr19 17337663 17337663 1 + T A rs199721272 17337675 + 17337655 17337695 41 CACCCGCCTGGGCCTGGGCCCCCGGTGAGCCTGACCGGGAG CACCCGCCAGGGCCTGGGCCCCCGGTGAGCCTGACCGGGAG < 41bp 1 0.687882326091135 1 0.510318875312805 experiment 0.624235347817731 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OCEL1 ENSG00000099330 CDS Human protein_coding chr19:17337675 chr19:17337663 synonymous SNV . 0 9 hm5C_associated_SNPs_13423 0 0 1 0 1 membrane 1 0.500231633028199 0.97936224937439 0.999536733943602 hm5C_site_15307 DeepMRMD:0.97936224937439;iRNA_m5C:0.999536733943602 15308 chr19 17392890 17392890 1 + C A rs369002862 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGAGGCGCGGAC < 41bp 1 0.556876474237768 1 0.186009407043457 experiment 0.886247051524464 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392879 chr19:17392890 stopgain 0.251 0 32 hm5C_associated_SNPs_13424 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15308 DeepMRMD:1;iRNA_m5C:0.999536712157815 15309 chr19 17392894 17392894 1 + G A rs8100241 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCACGGAC < 41bp 1 0.532148644454254 1 0.240589946508408 experiment 0.935702711091491 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392879 chr19:17392894 nonsynonymous SNV 0.145 3 36 hm5C_associated_SNPs_13425 0 1 1 6 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_15309 DeepMRMD:1;iRNA_m5C:0.999536712157815 15310 chr19 17424897 17424897 1 + C A rs185043934 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCGATTTCACGCGGACTCAGTGTGCAAAGCCT < 41bp 1 0.195088201753637 1 0.144187688827515 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424897 synonymous SNV . 0 28 hm5C_associated_SNPs_13426 0 0 1 0 2 Ribosome 1 0.500231644090118 1 0.999536711819763 hm5C_site_15310 DeepMRMD:1;iRNA_m5C:0.999536711819763 15311 chr19 17615414 17615414 1 + C T rs138685840 17615397 + 17615377 17615417 41 GAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTCGCCCT GAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTCGTCCT < 41bp 1 0.278987029648351 1 0.0760327279567719 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17615397 chr19:17615414 nonsynonymous SNV 0.032 0 38 hm5C_associated_SNPs_13427 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643890165 1 0.99953671221967 hm5C_site_15311 DeepMRMD:1;iRNA_m5C:0.99953671221967 15312 chr19 17688793 17688793 1 + G A rs13346446 17688792 + 17688772 17688812 41 GAACACCAGCCAGGTGGAGGCGCTGGGGATCCAGATGCTGC GAACACCAGCCAGGTGGAGGCACTGGGGATCCAGATGCTGC < 41bp 1 0.514045239745763 1 0.443356543779373 experiment 0.971909520508474 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17688792 chr19:17688793 synonymous SNV . 0 22 hm5C_associated_SNPs_13428 0 0 1 0 1 Ribosome 1 0.500231643589261 1 0.999536712821477 hm5C_site_15312 DeepMRMD:1;iRNA_m5C:0.999536712821477 15313 chr19 17692906 17692906 1 + C G rs140731529 17692916 + 17692896 17692936 41 TTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCT TTAGTAGAGAGGGGGTTTCACCATGTTGGCCAGGCTGGTCT < 41bp 1 0.412184191108175 1 0.525071382522583 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17692916 chr19:17692906 . . 0 11 hm5C_associated_SNPs_13429 0 0 0 0 0 Ribosome 1 0.500231643921092 0.949857234954834 0.999536712157815 hm5C_site_15313 DeepMRMD:0.949857234954834;iRNA_m5C:0.999536712157815 15314 chr19 17692906 17692906 1 + C G rs140731529 17692917 + 17692897 17692937 41 TAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTC TAGTAGAGAGGGGGTTTCACCATGTTGGCCAGGCTGGTCTC < 41bp 1 0.685724976416945 1 0.800085186958313 experiment 0.628550047166111 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17692917 chr19:17692906 . . 0 10 hm5C_associated_SNPs_13430 0 0 0 0 0 Ribosome 1 0.500231643920974 0.399829626083374 0.999536712158053 hm5C_site_15314 DeepMRMD:0.399829626083374;iRNA_m5C:0.999536712158053 15315 chr19 17692914 17692914 1 + C T rs530808814 17692916 + 17692896 17692936 41 TTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCT TTAGTAGAGACGGGGTTTTACCATGTTGGCCAGGCTGGTCT < 41bp 1 0.393364791094045 1 0.227085739374161 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17692916 chr19:17692914 . . 0 19 hm5C_associated_SNPs_13431 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15315 DeepMRMD:1;iRNA_m5C:0.999536712157815 15316 chr19 17692919 17692919 1 + T A rs3177708 17692916 + 17692896 17692936 41 TTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCT TTAGTAGAGACGGGGTTTCACCAAGTTGGCCAGGCTGGTCT < 41bp 1 0.547778358386828 1 0.614443957805634 experiment 0.904443283226345 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17692916 chr19:17692919 . . 0 24 hm5C_associated_SNPs_13434 0 0 0 0 0 Ribosome 1 0.500231643921092 0.771112084388732 0.999536712157815 hm5C_site_15316 DeepMRMD:0.771112084388732;iRNA_m5C:0.999536712157815 15317 chr19 17692929 17692929 1 + G A rs8110571 17692916 + 17692896 17692936 41 TTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCT TTAGTAGAGACGGGGTTTCACCATGTTGGCCAGACTGGTCT < 41bp 1 0.373474976733284 1 0.159389227628708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17692916 chr19:17692929 . . 0 34 hm5C_associated_SNPs_13436 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15317 DeepMRMD:1;iRNA_m5C:0.999536712157815 15318 chr19 17692929 17692929 1 + G A rs8110571 17692917 + 17692897 17692937 41 TAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTC TAGTAGAGACGGGGTTTCACCATGTTGGCCAGACTGGTCTC < 41bp 1 0.652020024396385 1 0.740977644920349 experiment 0.695959951207231 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17692917 chr19:17692929 . . 0 33 hm5C_associated_SNPs_13437 0 0 0 0 0 Ribosome 1 0.500231644819096 0.518044710159302 0.999536710361808 hm5C_site_15318 DeepMRMD:0.518044710159302;iRNA_m5C:0.999536710361808 15319 chr19 17693259 17693259 1 + T G rs114168906 17693278 + 17693258 17693298 41 TTGGCTTCTTTCCCACACACCTGAAGAGCACTGACTGTGTG TGGGCTTCTTTCCCACACACCTGAAGAGCACTGACTGTGTG < 41bp 1 0.617604695273204 1 0.347912609577179 experiment 0.764790609453592 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17693278 chr19:17693259 . . 0 2 hm5C_associated_SNPs_13438 0 0 1 0 0 Ribosome 1 0.500222720176573 1 0.999554559646854 hm5C_site_15319 DeepMRMD:1;iRNA_m5C:0.999554559646854 15320 chr19 17693605 17693605 1 + C G rs562243796 17693623 + 17693603 17693643 41 GGCCCCACGCCACATGTTAGCCCCCCTGGAGGGGGCGCCAG GGGCCCACGCCACATGTTAGCCCCCCTGGAGGGGGCGCCAG < 41bp 1 0.484634200095036 1 0.118404030799866 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17693623 chr19:17693605 . . 0 3 hm5C_associated_SNPs_13439 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_15320 DeepMRMD:1;iRNA_m5C:0.999536712157815 15321 chr19 17693605 17693605 1 + C G rs562243796 17693624 + 17693604 17693644 41 GCCCCACGCCACATGTTAGCCCCCCTGGAGGGGGCGCCAGT GGCCCACGCCACATGTTAGCCCCCCTGGAGGGGGCGCCAGT < 41bp 1 0.295225832740678 1 0.161183804273605 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17693624 chr19:17693605 . . 0 2 hm5C_associated_SNPs_13440 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_15321 DeepMRMD:1;iRNA_m5C:0.999536712157815 15322 chr19 17693605 17693605 1 + C G rs562243796 17693625 + 17693605 17693645 41 CCCCACGCCACATGTTAGCCCCCCTGGAGGGGGCGCCAGTT GCCCACGCCACATGTTAGCCCCCCTGGAGGGGGCGCCAGTT < 41bp 1 0.41422860325147 1 0.264634490013123 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17693625 chr19:17693605 . . 0 1 hm5C_associated_SNPs_13441 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15322 DeepMRMD:1;iRNA_m5C:0.999536712157815 15323 chr19 17693630 17693630 1 + G T rs180984411 17693623 + 17693603 17693643 41 GGCCCCACGCCACATGTTAGCCCCCCTGGAGGGGGCGCCAG GGCCCCACGCCACATGTTAGCCCCCCTTGAGGGGGCGCCAG < 41bp 1 0.413493594187471 1 0.135678738355637 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17693623 chr19:17693630 . . 0 28 hm5C_associated_SNPs_13442 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_15323 DeepMRMD:1;iRNA_m5C:0.999536712157815 15324 chr19 17693630 17693630 1 + G T rs180984411 17693624 + 17693604 17693644 41 GCCCCACGCCACATGTTAGCCCCCCTGGAGGGGGCGCCAGT GCCCCACGCCACATGTTAGCCCCCCTTGAGGGGGCGCCAGT < 41bp 1 0.354439997532472 1 0.11800417304039 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17693624 chr19:17693630 . . 0 27 hm5C_associated_SNPs_13443 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_15324 DeepMRMD:1;iRNA_m5C:0.999536712157815 15325 chr19 17693630 17693630 1 + G T rs180984411 17693625 + 17693605 17693645 41 CCCCACGCCACATGTTAGCCCCCCTGGAGGGGGCGCCAGTT CCCCACGCCACATGTTAGCCCCCCTTGAGGGGGCGCCAGTT < 41bp 1 0.349468411682217 1 0.192336767911911 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17693625 chr19:17693630 . . 0 26 hm5C_associated_SNPs_13444 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15325 DeepMRMD:1;iRNA_m5C:0.999536712157815 15326 chr19 17693630 17693630 1 + G T rs180984411 17693626 + 17693606 17693646 41 CCCACGCCACATGTTAGCCCCCCTGGAGGGGGCGCCAGTTG CCCACGCCACATGTTAGCCCCCCTTGAGGGGGCGCCAGTTG < 41bp 1 0.224480225525126 1 0.0477709770202637 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17693626 chr19:17693630 . . 0 25 hm5C_associated_SNPs_13445 0 0 1 0 0 Ribosome 1 0.50023164393198 1 0.999536712136039 hm5C_site_15326 DeepMRMD:1;iRNA_m5C:0.999536712136039 15327 chr19 17693918 17693918 1 + T C rs73524020 17693927 + 17693907 17693947 41 CTTCACCCTCTTGGGGATAACTTGCTTAGTTTTTTAATAAA CTTCACCCTCTCGGGGATAACTTGCTTAGTTTTTTAATAAA < 41bp 1 0.253627447220933 1 0.196140229701996 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COLGALT1 ENSG00000130309 UTR3 Human protein_coding chr19:17693927 chr19:17693918 . . 0 12 hm5C_associated_SNPs_13446 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15327 DeepMRMD:1;iRNA_m5C:0.999536712157815 15328 chr19 17836883 17836883 1 + G A rs116714292 17836880 + 17836860 17836900 41 CCCTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCT CCCTTCGAGCTGCTGGAGCCCCCAACCTCCGGGGGCTTCCT < 41bp 1 0.278121177820246 1 0.63157331943512 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836880 chr19:17836883 synonymous SNV . 0 24 hm5C_associated_SNPs_13447 0 0 1 0 0 Cytosol 1 0.500231643921092 0.73685336112976 0.999536712157815 hm5C_site_15328 DeepMRMD:0.73685336112976;iRNA_m5C:0.999536712157815 15329 chr19 17836883 17836883 1 + G A rs116714292 17836882 + 17836862 17836902 41 CTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCTCA CTTCGAGCTGCTGGAGCCCCCAACCTCCGGGGGCTTCCTCA < 41bp 1 0.331569046191684 1 0.409766346216202 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836882 chr19:17836883 synonymous SNV . 0 22 hm5C_associated_SNPs_13448 0 0 1 0 0 Cytosol 1 0.500231643921099 1 0.999536712157802 hm5C_site_15329 DeepMRMD:1;iRNA_m5C:0.999536712157802 15330 chr19 17836889 17836889 1 + C G rs181494116 17836880 + 17836860 17836900 41 CCCTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCT CCCTTCGAGCTGCTGGAGCCCCCGACCTCGGGGGGCTTCCT < 41bp 1 0.49867053856673 1 0.668494164943695 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836880 chr19:17836889 synonymous SNV . 0 30 hm5C_associated_SNPs_13449 0 0 1 0 0 Cytosol 1 0.500231643921092 0.66301167011261 0.999536712157815 hm5C_site_15330 DeepMRMD:0.66301167011261;iRNA_m5C:0.999536712157815 15331 chr19 17836889 17836889 1 + C G rs181494116 17836882 + 17836862 17836902 41 CTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCTCA CTTCGAGCTGCTGGAGCCCCCGACCTCGGGGGGCTTCCTCA < 41bp 1 0.391760640584286 1 0.768321871757507 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836882 chr19:17836889 synonymous SNV . 0 28 hm5C_associated_SNPs_13450 0 0 1 0 0 Cytosol 1 0.500231643921092 0.463356256484986 0.999536712157815 hm5C_site_15331 DeepMRMD:0.463356256484986;iRNA_m5C:0.999536712157815 15332 chr19 17973414 17973414 1 + G A rs151028181 17973409 + 17973389 17973429 41 CCTCCCTGATTGCACCTAAACCCAAGAATCACTGTTTCTTA CCTCCCTGATTGCACCTAAACCCAAAAATCACTGTTTCTTA < 41bp 1 0.513339129524729 1 0.0330275297164917 experiment 0.973321740950541 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA68 ENSG00000207166 ncRNA_exonic Human snoRNA chr19:17973409 chr19:17973414 . . 0 26 hm5C_associated_SNPs_13452 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15332 DeepMRMD:1;iRNA_m5C:0.999536712157815 15333 chr19 17973414 17973414 1 + G A rs151028181 17973410 + 17973390 17973430 41 CTCCCTGATTGCACCTAAACCCAAGAATCACTGTTTCTTAT CTCCCTGATTGCACCTAAACCCAAAAATCACTGTTTCTTAT < 41bp 1 0.333269976311858 1 0.169404983520508 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA68 ENSG00000207166 ncRNA_exonic Human snoRNA chr19:17973410 chr19:17973414 . . 0 25 hm5C_associated_SNPs_13453 0 0 1 1 0 unknown 1 0.500231643963829 1 0.999536712072342 hm5C_site_15333 DeepMRMD:1;iRNA_m5C:0.999536712072342 15334 chr19 17973414 17973414 1 + G A rs151028181 17973420 + 17973400 17973440 41 GCACCTAAACCCAAGAATCACTGTTTCTTATAGCGGTGGTT GCACCTAAACCCAAAAATCACTGTTTCTTATAGCGGTGGTT < 41bp 1 0.12528884025328 1 0.0349036455154419 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA68 ENSG00000207166 ncRNA_exonic Human snoRNA chr19:17973420 chr19:17973414 . . 0 15 hm5C_associated_SNPs_13454 0 0 1 1 0 unknown 1 0.500231643922444 1 0.999536712155113 hm5C_site_15334 DeepMRMD:1;iRNA_m5C:0.999536712155113 15335 chr19 17973414 17973414 1 + G A rs151028181 17973426 + 17973406 17973446 41 AAACCCAAGAATCACTGTTTCTTATAGCGGTGGTTTAAACA AAACCCAAAAATCACTGTTTCTTATAGCGGTGGTTTAAACA < 41bp 1 0.083807298545029 1 0.0319676697254181 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA68 ENSG00000207166 ncRNA_exonic Human snoRNA chr19:17973426 chr19:17973414 . . 0 9 hm5C_associated_SNPs_13455 0 0 1 1 0 unknown 1 0.50023182955369 1 0.999536340892619 hm5C_site_15335 DeepMRMD:1;iRNA_m5C:0.999536340892619 15336 chr19 17973494 17973494 1 + C T rs374837687 17973493 + 17973473 17973513 41 TCGCCTTTGGGGGGCTGTGGCCGTGCCCCTCAAAGTGAATT TCGCCTTTGGGGGGCTGTGGCTGTGCCCCTCAAAGTGAATT < 41bp 1 0.349023541400948 1 0.064999908208847 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA68 ENSG00000207166 ncRNA_exonic Human snoRNA chr19:17973493 chr19:17973494 . . 0 22 hm5C_associated_SNPs_13456 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15336 DeepMRMD:1;iRNA_m5C:0.999536712157815 15337 chr19 17973752 17973752 1 + C A rs148256083 17973750 + 17973730 17973770 41 GAGACATGGGTGCCCGGCACCGCGCCCGAGCCCACTCCATT GAGACATGGGTGCCCGGCACCGAGCCCGAGCCCACTCCATT < 41bp 1 0.524231102584258 1 0.716185092926025 experiment 0.951537794831485 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL18A ENSG00000105640 CDS Human protein_coding chr19:17973750 chr19:17973752 synonymous SNV . 0 23 hm5C_associated_SNPs_13457 0 0 1 0 2 Cytosol 1 0.500231666164455 0.56762981414795 0.99953666767109 hm5C_site_15337 DeepMRMD:0.56762981414795;iRNA_m5C:0.99953666767109 15338 chr19 17973755 17973755 1 + C T rs374587280 17973750 + 17973730 17973770 41 GAGACATGGGTGCCCGGCACCGCGCCCGAGCCCACTCCATT GAGACATGGGTGCCCGGCACCGCGCTCGAGCCCACTCCATT < 41bp 1 0.657556104113132 1 0.471222758293152 experiment 0.684887791773735 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL18A ENSG00000105640 CDS Human protein_coding chr19:17973750 chr19:17973755 synonymous SNV . 0 26 hm5C_associated_SNPs_13458 0 0 1 0 2 Cytosol 1 0.500221867182624 1 0.999556265634752 hm5C_site_15338 DeepMRMD:1;iRNA_m5C:0.999556265634752 15339 chr19 18045988 18045988 1 + G A rs77851722 18045996 + 18045976 18046016 41 CTCCCAAAGCACGGGGATTACAAACGTGAGTGATCGCACCC CTCCCAAAGCACAGGGATTACAAACGTGAGTGATCGCACCC < 41bp 1 0.465838009177513 1 0.326624512672424 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC124 ENSG00000007080 UTR5 Human protein_coding chr19:18045996 chr19:18045988 . . 0 13 hm5C_associated_SNPs_13459 0 0 1 0 1 Ribosome 1 0.500231643908497 1 0.999536712183006 hm5C_site_15339 DeepMRMD:1;iRNA_m5C:0.999536712183006 15340 chr19 18045988 18045988 1 + G A rs77851722 18046000 + 18045980 18046020 41 CAAAGCACGGGGATTACAAACGTGAGTGATCGCACCCGGCC CAAAGCACAGGGATTACAAACGTGAGTGATCGCACCCGGCC < 41bp 1 0.639270252028412 1 0.51215672492981 experiment 0.721459495943176 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC124 ENSG00000007080 UTR5 Human protein_coding chr19:18046000 chr19:18045988 . . 0 9 hm5C_associated_SNPs_13460 0 0 1 0 1 Ribosome 1 0.500231643921092 0.97568655014038 0.999536712157815 hm5C_site_15340 DeepMRMD:0.97568655014038;iRNA_m5C:0.999536712157815 15341 chr19 18046000 18046000 1 + C T rs548714784 18045996 + 18045976 18046016 41 CTCCCAAAGCACGGGGATTACAAACGTGAGTGATCGCACCC CTCCCAAAGCACGGGGATTACAAATGTGAGTGATCGCACCC < 41bp 1 0.567304485811143 1 0.411503583192825 experiment 0.865391028377713 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC124 ENSG00000007080 UTR5 Human protein_coding chr19:18045996 chr19:18046000 . . 0 25 hm5C_associated_SNPs_13461 0 0 1 0 1 Ribosome 1 0.500231643921078 1 0.999536712157843 hm5C_site_15341 DeepMRMD:1;iRNA_m5C:0.999536712157843 15342 chr19 18053557 18053557 1 + C G rs4808106 18053574 + 18053554 18053594 41 CGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC CGGGAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC < 41bp 1 0.383126241619547 1 0.0548942089080811 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053574 chr19:18053557 synonymous SNV . 0 4 hm5C_associated_SNPs_13462 0 0 1 0 2 Ribosome 1 0.500231643920027 1 0.999536712159946 hm5C_site_15342 DeepMRMD:1;iRNA_m5C:0.999536712159946 15343 chr19 18054643 18054643 1 + C T rs1052564 18054627 + 18054607 18054647 41 GTCACAGAGCGTTCCGGGGGCCAAGGCGCCGGGCCCCGGGG GTCACAGAGCGTTCCGGGGGCCAAGGCGCCGGGCCCTGGGG < 41bp 1 0.555818285369777 1 0.594029903411865 experiment 0.888363429260446 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CCDC124 ENSG00000007080 UTR3 Human protein_coding chr19:18054627 chr19:18054643 . . 0 37 hm5C_associated_SNPs_13464 0 0 1 0 0 Ribosome 1 0.500231644447729 0.81194019317627 0.999536711104542 hm5C_site_15343 DeepMRMD:0.81194019317627;iRNA_m5C:0.999536711104542 15344 chr19 18054643 18054643 1 + C T rs1052564 18054640 + 18054620 18054660 41 CCGGGGGCCAAGGCGCCGGGCCCCGGGGCCATGCTCTTATC CCGGGGGCCAAGGCGCCGGGCCCTGGGGCCATGCTCTTATC < 41bp 1 0.41984450964304 1 0.10975781083107 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CCDC124 ENSG00000007080 UTR3 Human protein_coding chr19:18054640 chr19:18054643 . . 0 24 hm5C_associated_SNPs_13465 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15344 DeepMRMD:1;iRNA_m5C:0.999536712157815 15345 chr19 18054643 18054643 1 + C T rs1052564 18054641 + 18054621 18054661 41 CGGGGGCCAAGGCGCCGGGCCCCGGGGCCATGCTCTTATCA CGGGGGCCAAGGCGCCGGGCCCTGGGGCCATGCTCTTATCA < 41bp 1 0.376437650053643 1 0.544524967670441 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CCDC124 ENSG00000007080 UTR3 Human protein_coding chr19:18054641 chr19:18054643 . . 0 23 hm5C_associated_SNPs_13466 0 0 1 0 0 Ribosome 1 0.500231643921471 0.910950064659118 0.999536712157057 hm5C_site_15345 DeepMRMD:0.910950064659118;iRNA_m5C:0.999536712157057 15346 chr19 18109314 18109314 1 + A G rs1057261 18109296 + 18109276 18109316 41 AGCCTTGTACAGTGGCGCCTCTTGGAGTTCAAGAAGCCAAC AGCCTTGTACAGTGGCGCCTCTTGGAGTTCAAGAAGCCGAC < 41bp 1 0.48896407211448 1 0.716875314712524 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNN1 ENSG00000105642 UTR3 Human protein_coding chr19:18109296 chr19:18109314 . . 0 39 hm5C_associated_SNPs_13467 0 0 0 0 0 nucleolus 1 0.500231643955631 0.566249370574952 0.999536712088738 hm5C_site_15346 DeepMRMD:0.566249370574952;iRNA_m5C:0.999536712088738 15347 chr19 18255940 18255940 1 + C T rs145623321 18255949 + 18255929 18255969 41 CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG CGGCCCCCCATTGTTATCCACAGCTCTGGCAAGAAGTACGG < 41bp 1 0.218848354738631 1 0.0382837653160095 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255949 chr19:18255940 synonymous SNV . 0 12 hm5C_associated_SNPs_13468 0 0 0 0 1 Cytosol 1 0.500231646819178 1 0.999536706361644 hm5C_site_15347 DeepMRMD:1;iRNA_m5C:0.999536706361644 15348 chr19 18255967 18255967 1 + C G rs73925427 18255949 + 18255929 18255969 41 CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTAGGG < 41bp 1 0.223690517149981 1 0.0954457223415375 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255949 chr19:18255967 stopgain 0.999 1 39 hm5C_associated_SNPs_13469 0 0 0 0 1 Cytosol 1 0.500231644019533 1 0.999536711960935 hm5C_site_15348 DeepMRMD:1;iRNA_m5C:0.999536711960935 15349 chr19 18260215 18260215 1 + G A rs188842427 18260224 + 18260204 18260244 41 CGCTCGCCCTCGCCCCTGCCCGGGCACCCGCCCGCACCTGC CGCTCGCCCTCACCCCTGCCCGGGCACCCGCCCGCACCTGC < 41bp 1 0.555871539879141 1 0.867837429046631 experiment 0.888256920241719 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18260224 chr19:18260215 synonymous SNV . 0 12 hm5C_associated_SNPs_13470 0 0 0 0 0 Cytosol 1 0.500231643921092 0.264325141906738 0.999536712157815 hm5C_site_15349 DeepMRMD:0.264325141906738;iRNA_m5C:0.999536712157815 15350 chr19 18280230 18280230 1 + T A rs57909410 18280214 + 18280194 18280234 41 ATCCAGGGGTCCTCATTTCTCCGGCTCTGGCTCTTGTTTGG ATCCAGGGGTCCTCATTTCTCCGGCTCTGGCTCTTGATTGG < 41bp 1 0.615369008439404 1 0.85872495174408 experiment 0.769261983121192 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control PIK3R2 ENSG00000105647;ENSG00000268173 UTR3 Human other chr19:18280214 chr19:18280230 . . 0 37 hm5C_associated_SNPs_13471 0 0 1 1 0 Cytosol 1 0.500039317325818 0.28255009651184 0.999921365348365 hm5C_site_15350 DeepMRMD:0.28255009651184;iRNA_m5C:0.999921365348365 15351 chr19 18280230 18280230 1 + T A rs57909410 18280215 + 18280195 18280235 41 TCCAGGGGTCCTCATTTCTCCGGCTCTGGCTCTTGTTTGGG TCCAGGGGTCCTCATTTCTCCGGCTCTGGCTCTTGATTGGG < 41bp 1 0.338452802420426 1 0.241852313280106 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control PIK3R2 ENSG00000105647;ENSG00000268173 UTR3 Human other chr19:18280215 chr19:18280230 . . 0 36 hm5C_associated_SNPs_13472 0 0 1 1 0 Cytosol 1 0.500231643921097 1 0.999536712157805 hm5C_site_15351 DeepMRMD:1;iRNA_m5C:0.999536712157805 15352 chr19 18280779 18280779 1 + G T rs535565139 18280789 + 18280769 18280809 41 AGCACTTTGGGAGGCCAAGACGGGCGGATCTTTTGAGGTCG AGCACTTTGGTAGGCCAAGACGGGCGGATCTTTTGAGGTCG < 41bp 1 0.586506364257453 1 0.716356635093689 experiment 0.826987271485094 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3R2 ENSG00000105647;ENSG00000268173 UTR3 Human other chr19:18280789 chr19:18280779 . . 0 11 hm5C_associated_SNPs_13473 0 0 0 0 0 Cytosol 1 0.500231643921092 0.567286729812622 0.999536712157815 hm5C_site_15352 DeepMRMD:0.567286729812622;iRNA_m5C:0.999536712157815 15353 chr19 18285944 18285944 1 + G A rs11554159 18285943 + 18285923 18285963 41 AAGCACTGTGCGGTGGCTGCCGAGCCTTCCTGATCCGGGAG AAGCACTGTGCGGTGGCTGCCAAGCCTTCCTGATCCGGGAG < 41bp 1 0.458218428306944 1 0.902614772319794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI30 ENSG00000216490 CDS Human protein_coding chr19:18285943 chr19:18285944 nonsynonymous SNV 0.009 1 22 hm5C_associated_SNPs_13474 0 1 1 0 2 Endoplasmic reticulum 1 0.500231643939187 0.194770455360412 0.999536712121626 hm5C_site_15353 DeepMRMD:0.194770455360412;iRNA_m5C:0.999536712121626 15354 chr19 18288069 18288069 1 + A G rs7125 18288068 + 18288048 18288088 41 GACAGATGCTCTCCAGCCACCACACGAGTATGTGCCCTGGG GACAGATGCTCTCCAGCCACCGCACGAGTATGTGCCCTGGG < 41bp 1 0.257020414905169 1 0.447340548038483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI30 ENSG00000216490 CDS Human protein_coding chr19:18288068 chr19:18288069 synonymous SNV . 0 22 hm5C_associated_SNPs_13475 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920623 1 0.999536712158754 hm5C_site_15354 DeepMRMD:1;iRNA_m5C:0.999536712158754 15355 chr19 18451435 18451435 1 + A C rs570498910 18451440 + 18451420 18451460 41 AGAGGCTGCAGCGGCAGCAGCTGTCGCGCCAGTCGCAACAG AGAGGCTGCAGCGGCCGCAGCTGTCGCGCCAGTCGCAACAG < 41bp 1 0.377953687086884 1 0.304143071174622 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PGPEP1 ENSG00000130517 UTR5 Human protein_coding chr19:18451440 chr19:18451435 . . 0 16 hm5C_associated_SNPs_13477 0 0 1 0 1 Nucleus 1 0.500231619057584 1 0.999536761884831 hm5C_site_15355 DeepMRMD:1;iRNA_m5C:0.999536761884831 15356 chr19 18451456 18451456 1 + A G rs553180914 18451440 + 18451420 18451460 41 AGAGGCTGCAGCGGCAGCAGCTGTCGCGCCAGTCGCAACAG AGAGGCTGCAGCGGCAGCAGCTGTCGCGCCAGTCGCGACAG < 41bp 1 0.433306551736562 1 0.237459808588028 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PGPEP1 ENSG00000130517 UTR5 Human protein_coding chr19:18451440 chr19:18451456 . . 0 37 hm5C_associated_SNPs_13478 0 0 1 0 1 Nucleus 1 0.500231676813164 1 0.999536646373671 hm5C_site_15356 DeepMRMD:1;iRNA_m5C:0.999536646373671 15357 chr19 18451457 18451457 1 + A G rs2302946 18451440 + 18451420 18451460 41 AGAGGCTGCAGCGGCAGCAGCTGTCGCGCCAGTCGCAACAG AGAGGCTGCAGCGGCAGCAGCTGTCGCGCCAGTCGCAGCAG < 41bp 1 0.40753745468038 1 0.295652031898499 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PGPEP1 ENSG00000130517 UTR5 Human protein_coding chr19:18451440 chr19:18451457 . . 0 38 hm5C_associated_SNPs_13479 0 0 1 0 1 Nucleus 1 0.50023054837132 1 0.99953890325736 hm5C_site_15357 DeepMRMD:1;iRNA_m5C:0.99953890325736 15358 chr19 18530298 18530298 1 + C T rs539441578 18530295 + 18530275 18530315 41 TGGAGCCGCCGCTGCCGCCGCCGCCGCGGCCGTCTGGAGCT TGGAGCCGCCGCTGCCGCCGCCGTCGCGGCCGTCTGGAGCT < 41bp 1 0.263141108212438 1 0.69773268699646 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSBP4 ENSG00000130511 UTR5 Human protein_coding chr19:18530295 chr19:18530298 . . 0 24 hm5C_associated_SNPs_13480 0 0 1 0 0 Ribosome 1 0.500231643921092 0.60453462600708 0.999536712157815 hm5C_site_15358 DeepMRMD:0.60453462600708;iRNA_m5C:0.999536712157815 15359 chr19 18530298 18530298 1 + C T rs539441578 18530296 + 18530276 18530316 41 GGAGCCGCCGCTGCCGCCGCCGCCGCGGCCGTCTGGAGCTC GGAGCCGCCGCTGCCGCCGCCGTCGCGGCCGTCTGGAGCTC < 41bp 1 0.588012255730147 1 0.684276401996613 experiment 0.823975488539706 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSBP4 ENSG00000130511 UTR5 Human protein_coding chr19:18530296 chr19:18530298 . . 0 23 hm5C_associated_SNPs_13481 0 0 1 0 0 Ribosome 1 0.500228586631786 0.631447196006774 0.999542826736429 hm5C_site_15359 DeepMRMD:0.631447196006774;iRNA_m5C:0.999542826736429 15360 chr19 18542849 18542849 1 + C G rs538123528 18542868 + 18542848 18542888 41 CCTCCTCGTGGCATGGCCAGCGTGGGGCCCCAGGTAAGAGT CGTCCTCGTGGCATGGCCAGCGTGGGGCCCCAGGTAAGAGT < 41bp 1 0.465882227823921 1 0.641592144966125 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18542868 chr19:18542849 nonsynonymous SNV 0.594 2 2 hm5C_associated_SNPs_13482 0 0 1 0 1 Ribosome 1 0.500231643920734 0.71681571006775 0.999536712158533 hm5C_site_15360 DeepMRMD:0.71681571006775;iRNA_m5C:0.999536712158533 15361 chr19 18543841 18543841 1 + C T rs138143670 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATCGGGCAGGGCGCTGGCAGGGCTAATGTGAGTG < 41bp 1 0.323105927126823 1 0.243281662464142 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543841 synonymous SNV . 0 22 hm5C_associated_SNPs_13483 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15361 DeepMRMD:1;iRNA_m5C:0.999536712157815 15362 chr19 18679351 18679351 1 + C T rs11086117 18679364 + 18679344 18679384 41 TGAGCCCCGGCTTCGAGGACCTGTCCCATGTCCAGCCTGGC TGAGCCCTGGCTTCGAGGACCTGTCCCATGTCCAGCCTGGC < 41bp 1 0.155002275412182 1 0.15251037478447 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KXD1 ENSG00000105700 CDS Human protein_coding chr19:18679364 chr19:18679351 synonymous SNV . 0 8 hm5C_associated_SNPs_13484 0 0 1 0 0 Ribosome 1 0.500231642055063 1 0.999536715889875 hm5C_site_15362 DeepMRMD:1;iRNA_m5C:0.999536715889875 15363 chr19 18679379 18679379 1 + C G rs7648 18679364 + 18679344 18679384 41 TGAGCCCCGGCTTCGAGGACCTGTCCCATGTCCAGCCTGGC TGAGCCCCGGCTTCGAGGACCTGTCCCATGTCCAGGCTGGC < 41bp 1 0.128016294394771 1 0.188563138246536 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KXD1 ENSG00000105700 CDS Human protein_coding chr19:18679364 chr19:18679379 nonsynonymous SNV 0.006 0 36 hm5C_associated_SNPs_13485 0 0 1 0 0 Ribosome 1 0.500231637584316 1 0.999536724831368 hm5C_site_15363 DeepMRMD:1;iRNA_m5C:0.999536724831368 15364 chr19 18679655 18679655 1 + C T rs57907504 18679645 + 18679625 18679665 41 TCCTTCCTTCCTCAGAACATCTCTATTCTGCAAGACCCCTC TCCTTCCTTCCTCAGAACATCTCTATTCTGTAAGACCCCTC < 41bp 1 0.620243115189595 1 0.366653203964233 experiment 0.759513769620811 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KXD1 ENSG00000268983 ncRNA_intronic Human antisense chr19:18679645 chr19:18679655 . . 0 31 hm5C_associated_SNPs_13486 0 0 1 1 0 Ribosome 1 0.500231643917989 1 0.999536712164022 hm5C_site_15364 DeepMRMD:1;iRNA_m5C:0.999536712164022 15365 chr19 18702908 18702908 1 + G A rs115920145 18702906 + 18702886 18702926 41 GTTTTATTTATAGTTCCCATCCGCTCTTGTAGGGTAATTAA GTTTTATTTATAGTTCCCATCCACTCTTGTAGGGTAATTAA < 41bp 1 0.141736757330723 1 0.1580990254879 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C19orf60 ENSG00000006015 CDS Human protein_coding chr19:18702906 chr19:18702908 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_13487 0 0 0 0 0 Ribosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_15365 DeepMRMD:1;iRNA_m5C:0.999536712157811 15366 chr19 18729275 18729275 1 + C A rs150780487 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCCTGGTGACAGCGCCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.201904131242174 1 0.298381209373474 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729275 synonymous SNV . 0 12 hm5C_associated_SNPs_13488 0 0 1 0 2 Cytosol 1 0.50023164391961 1 0.99953671216078 hm5C_site_15366 DeepMRMD:1;iRNA_m5C:0.99953671216078 15367 chr19 18856649 18856649 1 + C T rs555463141 18856662 + 18856642 18856682 41 CAATCCTCGGGCCTGGACACCAGCCGGACCACCCGGCACCA CAATCCTTGGGCCTGGACACCAGCCGGACCACCCGGCACCA < 41bp 1 0.382116108810209 1 0.409990787506104 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18856662 chr19:18856649 nonsynonymous SNV 0.998 0 8 hm5C_associated_SNPs_13489 0 0 1 0 1 Cytosol 1 0.500241938675599 1 0.999516122648802 hm5C_site_15367 DeepMRMD:1;iRNA_m5C:0.999516122648802 15368 chr19 18856649 18856649 1 + C T rs555463141 18856665 + 18856645 18856685 41 TCCTCGGGCCTGGACACCAGCCGGACCACCCGGCACCATGG TCCTTGGGCCTGGACACCAGCCGGACCACCCGGCACCATGG < 41bp 1 0.557817437936877 1 0.527554273605347 experiment 0.884365124126245 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18856665 chr19:18856649 nonsynonymous SNV 0.998 0 5 hm5C_associated_SNPs_13490 0 0 1 0 1 Cytosol 1 0.500231582388531 0.944891452789306 0.999536835222937 hm5C_site_15368 DeepMRMD:0.944891452789306;iRNA_m5C:0.999536835222937 15369 chr19 18967721 18967721 1 + C T rs34677724 18967720 + 18967700 18967740 41 CTGCTGCACATGTGTGGGCGCCGGTGACCCGAGGCTGGCCA CTGCTGCACATGTGTGGGCGCTGGTGACCCGAGGCTGGCCA < 41bp 1 0.4384921910059 1 0.433877825737 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18967720 chr19:18967721 synonymous SNV . 0 22 hm5C_associated_SNPs_13491 0 0 1 0 1 Nucleus 1 0.500235888355613 1 0.999528223288774 hm5C_site_15369 DeepMRMD:1;iRNA_m5C:0.999528223288774 15370 chr19 18967730 18967730 1 + G A rs146805409 18967720 + 18967700 18967740 41 CTGCTGCACATGTGTGGGCGCCGGTGACCCGAGGCTGGCCA CTGCTGCACATGTGTGGGCGCCGGTGACCCAAGGCTGGCCA < 41bp 1 0.238049086059939 1 0.533830285072327 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18967720 chr19:18967730 synonymous SNV . 0 31 hm5C_associated_SNPs_13492 0 0 1 0 2 Nucleus 1 0.500231626890676 0.932339429855346 0.999536746218647 hm5C_site_15370 DeepMRMD:0.932339429855346;iRNA_m5C:0.999536746218647 15371 chr19 18968335 18968335 1 + C T rs8103462 18968319 + 18968299 18968339 41 CAACATCTTCTACGAGGGCTCCCTCCAGAATGGTGTCACTG CAACATCTTCTACGAGGGCTCCCTCCAGAATGGTGTTACTG < 41bp 1 0.0223612639880214 1 0.037216454744339 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18968319 chr19:18968335 synonymous SNV . 0 37 hm5C_associated_SNPs_13493 0 0 1 0 1 Nucleus 1 0.500229269184113 1 0.999541461631774 hm5C_site_15371 DeepMRMD:1;iRNA_m5C:0.999541461631774 15372 chr19 18978228 18978228 1 + G A rs557581918 18978218 + 18978198 18978238 41 GTGAGGAAGGTGCTTTTGGCCCCATTGCGAGGGGCCTTGGC GTGAGGAAGGTGCTTTTGGCCCCATTGCGAAGGGCCTTGGC < 41bp 1 0.315004435090368 1 0.0980013608932495 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 UTR3 Human protein_coding chr19:18978218 chr19:18978228 . . 0 31 hm5C_associated_SNPs_13494 0 0 1 0 0 Nucleus 1 0.500231643940668 1 0.999536712118665 hm5C_site_15372 DeepMRMD:1;iRNA_m5C:0.999536712118665 15373 chr19 18978228 18978228 1 + G A rs557581918 18978219 + 18978199 18978239 41 TGAGGAAGGTGCTTTTGGCCCCATTGCGAGGGGCCTTGGCC TGAGGAAGGTGCTTTTGGCCCCATTGCGAAGGGCCTTGGCC < 41bp 1 0.134616040897368 1 0.0929960012435913 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 UTR3 Human protein_coding chr19:18978219 chr19:18978228 . . 0 30 hm5C_associated_SNPs_13495 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15373 DeepMRMD:1;iRNA_m5C:0.999536712157815 15374 chr19 18978228 18978228 1 + G A rs557581918 18978220 + 18978200 18978240 41 GAGGAAGGTGCTTTTGGCCCCATTGCGAGGGGCCTTGGCCA GAGGAAGGTGCTTTTGGCCCCATTGCGAAGGGCCTTGGCCA < 41bp 1 0.245185408567011 1 0.0716531276702881 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 UTR3 Human protein_coding chr19:18978220 chr19:18978228 . . 0 29 hm5C_associated_SNPs_13496 0 0 1 0 0 Nucleus 1 0.500231643850144 1 0.999536712299712 hm5C_site_15374 DeepMRMD:1;iRNA_m5C:0.999536712299712 15375 chr19 18978228 18978228 1 + G A rs557581918 18978232 + 18978212 18978252 41 TTTGGCCCCATTGCGAGGGGCCTTGGCCAGGACTGGCCCTG TTTGGCCCCATTGCGAAGGGCCTTGGCCAGGACTGGCCCTG < 41bp 1 0.149775987385988 1 0.0247873067855835 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 UTR3 Human protein_coding chr19:18978232 chr19:18978228 . . 0 17 hm5C_associated_SNPs_13497 0 0 1 0 0 Nucleus 1 0.500231643988877 1 0.999536712022247 hm5C_site_15375 DeepMRMD:1;iRNA_m5C:0.999536712022247 15376 chr19 18978228 18978228 1 + G A rs557581918 18978233 + 18978213 18978253 41 TTGGCCCCATTGCGAGGGGCCTTGGCCAGGACTGGCCCTGT TTGGCCCCATTGCGAAGGGCCTTGGCCAGGACTGGCCCTGT < 41bp 1 0.558409032844256 1 0.0731824338436127 experiment 0.883181934311487 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 UTR3 Human protein_coding chr19:18978233 chr19:18978228 . . 0 16 hm5C_associated_SNPs_13498 0 0 1 0 0 Nucleus 1 0.500231643921247 1 0.999536712157507 hm5C_site_15376 DeepMRMD:1;iRNA_m5C:0.999536712157507 15377 chr19 18978250 18978250 1 + C T rs10416469 18978232 + 18978212 18978252 41 TTTGGCCCCATTGCGAGGGGCCTTGGCCAGGACTGGCCCTG TTTGGCCCCATTGCGAGGGGCCTTGGCCAGGACTGGCCTTG < 41bp 1 0.123429021364939 1 0.0201522707939148 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 UTR3 Human protein_coding chr19:18978232 chr19:18978250 . . 0 39 hm5C_associated_SNPs_13499 0 0 1 0 0 Nucleus 1 0.500231643923107 1 0.999536712153787 hm5C_site_15377 DeepMRMD:1;iRNA_m5C:0.999536712153787 15378 chr19 18978250 18978250 1 + C T rs10416469 18978233 + 18978213 18978253 41 TTGGCCCCATTGCGAGGGGCCTTGGCCAGGACTGGCCCTGT TTGGCCCCATTGCGAGGGGCCTTGGCCAGGACTGGCCTTGT < 41bp 1 0.523336474737534 1 0.0616571605205536 experiment 0.953327050524932 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 UTR3 Human protein_coding chr19:18978233 chr19:18978250 . . 0 38 hm5C_associated_SNPs_13500 0 0 1 0 0 Nucleus 1 0.500231643924251 1 0.999536712151497 hm5C_site_15378 DeepMRMD:1;iRNA_m5C:0.999536712151497 15379 chr19 19030540 19030540 1 + C G rs2231991 19030530 + 19030510 19030550 41 ACACGGGCCCCTACAAGGGGCCCCTACAAGCGGCCACAAGG ACACGGGCCCCTACAAGGGGCCCCTACAAGGGGCCACAAGG < 41bp 1 0.0707897381915722 1 0.0464961230754852 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDX49 ENSG00000105671 UTR5 Human protein_coding chr19:19030530 chr19:19030540 . . 0 31 hm5C_associated_SNPs_13501 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15379 DeepMRMD:1;iRNA_m5C:0.999536712157815 15380 chr19 19030540 19030540 1 + C G rs2231991 19030531 + 19030511 19030551 41 CACGGGCCCCTACAAGGGGCCCCTACAAGCGGCCACAAGGA CACGGGCCCCTACAAGGGGCCCCTACAAGGGGCCACAAGGA < 41bp 1 0.105640954532728 1 0.0531685948371887 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDX49 ENSG00000105671 UTR5 Human protein_coding chr19:19030531 chr19:19030540 . . 0 30 hm5C_associated_SNPs_13502 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15380 DeepMRMD:1;iRNA_m5C:0.999536712157815 15381 chr19 19030540 19030540 1 + C G rs2231991 19030532 + 19030512 19030552 41 ACGGGCCCCTACAAGGGGCCCCTACAAGCGGCCACAAGGAT ACGGGCCCCTACAAGGGGCCCCTACAAGGGGCCACAAGGAT < 41bp 1 0.0248475561470643 1 0.114473193883896 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDX49 ENSG00000105671 UTR5 Human protein_coding chr19:19030532 chr19:19030540 . . 0 29 hm5C_associated_SNPs_13503 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15381 DeepMRMD:1;iRNA_m5C:0.999536712157815 15382 chr19 19035525 19035525 1 + C A rs140875596 19035531 + 19035511 19035551 41 GAGCAGCCCCCAGTCTCCTGCCAAGGGCACTCCCTCTTTTA GAGCAGCCCCCAGTATCCTGCCAAGGGCACTCCCTCTTTTA < 41bp 1 0.0935120414283053 1 0.335151731967926 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX49 ENSG00000105671;ENSG00000268193 intronic Human other chr19:19035531 chr19:19035525 . . 0 15 hm5C_associated_SNPs_13504 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15382 DeepMRMD:1;iRNA_m5C:0.999536712157815 15383 chr19 19035537 19035537 1 + G A rs59107085 19035531 + 19035511 19035551 41 GAGCAGCCCCCAGTCTCCTGCCAAGGGCACTCCCTCTTTTA GAGCAGCCCCCAGTCTCCTGCCAAGGACACTCCCTCTTTTA < 41bp 1 0.0971555587460865 1 0.402868002653122 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX49 ENSG00000105671;ENSG00000268193 intronic Human other chr19:19035531 chr19:19035537 . . 0 27 hm5C_associated_SNPs_13505 0 0 1 0 0 Cytosol 1 0.500231252455556 1 0.999537495088889 hm5C_site_15383 DeepMRMD:1;iRNA_m5C:0.999537495088889 15384 chr19 19223527 19223527 1 + C G rs536724104 19223542 + 19223522 19223562 41 CACCCCTGCACACAGCCAGGCCCTCAGGCTCTGCGGTCACT CACCCGTGCACACAGCCAGGCCCTCAGGCTCTGCGGTCACT < 41bp 1 0.0858985399154284 1 0.0142191052436829 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC25A42 ENSG00000181035 UTR3 Human protein_coding chr19:19223542 chr19:19223527 . . 0 6 hm5C_associated_SNPs_13507 0 0 1 0 0 Endoplasmic reticulum 1 0.500231566477472 1 0.999536867045056 hm5C_site_15384 DeepMRMD:1;iRNA_m5C:0.999536867045056 15385 chr19 19459215 19459215 1 + C T rs968525 19459205 + 19459185 19459225 41 AAGCCCAGCCCCGGCTTAGTCATCCGATGCCATACGTGGGC AAGCCCAGCCCCGGCTTAGTCATCCGATGCTATACGTGGGC < 41bp 1 0.0586069183439017 1 0.499514877796173 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAU2 ENSG00000129933 intronic Human protein_coding chr19:19459205 chr19:19459215 . . 0 31 hm5C_associated_SNPs_13508 0 0 0 0 0 Nucleus 1 0.500231643918034 1 0.999536712163931 hm5C_site_15385 DeepMRMD:1;iRNA_m5C:0.999536712163931 15386 chr19 19467996 19467996 1 + T A rs2285628 19468003 + 19467983 19468023 41 ATAACCCCCTTCCTCACTGGCCACCACCTGACATCAGCACC ATAACCCCCTTCCACACTGGCCACCACCTGACATCAGCACC < 41bp 1 0.0663473674105195 1 0.0223898887634277 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAU2 ENSG00000129933 UTR3 Human protein_coding chr19:19468003 chr19:19467996 . . 0 14 hm5C_associated_SNPs_13509 0 0 1 0 0 Nucleus 1 0.500231643872192 1 0.999536712255616 hm5C_site_15386 DeepMRMD:1;iRNA_m5C:0.999536712255616 15387 chr19 19605132 19605132 1 + C T rs146134903 19605126 + 19605106 19605146 41 ACAGGTTCTGTTGGGAGCACCGTGACCACCCCTCCCCCGCT ACAGGTTCTGTTGGGAGCACCGTGACTACCCCTCCCCCGCT < 41bp 1 0.688316971073256 1 0.733365416526794 experiment 0.623366057853488 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19605126 chr19:19605132 synonymous SNV . 0 27 hm5C_associated_SNPs_13510 0 0 1 0 2 Cytosol 1 0.500231643920913 0.533269166946412 0.999536712158174 hm5C_site_15387 DeepMRMD:0.533269166946412;iRNA_m5C:0.999536712158174 15388 chr19 19605144 19605144 1 + G A rs200171655 19605126 + 19605106 19605146 41 ACAGGTTCTGTTGGGAGCACCGTGACCACCCCTCCCCCGCT ACAGGTTCTGTTGGGAGCACCGTGACCACCCCTCCCCCACT < 41bp 1 0.588538547976629 1 0.687827050685883 experiment 0.822922904046742 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19605126 chr19:19605144 synonymous SNV . 0 39 hm5C_associated_SNPs_13511 0 0 1 0 2 Cytosol 1 0.500231586710955 0.624345898628234 0.99953682657809 hm5C_site_15388 DeepMRMD:0.624345898628234;iRNA_m5C:0.99953682657809 15389 chr19 19618398 19618398 1 + G T rs148458424 19618380 + 19618360 19618400 41 ATCCGAGCCGCACCTGCCGGCCCCCAGCCCCAGCTCCAGCT ATCCGAGCCGCACCTGCCGGCCCCCAGCCCCAGCTCCATCT < 41bp 1 0.193028955726913 1 0.025112122297287 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GATAD2A ENSG00000167491 UTR3 Human protein_coding chr19:19618380 chr19:19618398 . . 0 39 hm5C_associated_SNPs_13512 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15389 DeepMRMD:1;iRNA_m5C:0.999536712157815 15390 chr19 19618398 19618398 1 + G T rs148458424 19618381 + 19618361 19618401 41 TCCGAGCCGCACCTGCCGGCCCCCAGCCCCAGCTCCAGCTC TCCGAGCCGCACCTGCCGGCCCCCAGCCCCAGCTCCATCTC < 41bp 1 0.534467783152241 1 0.262921988964081 experiment 0.931064433695519 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GATAD2A ENSG00000167491 UTR3 Human protein_coding chr19:19618381 chr19:19618398 . . 0 38 hm5C_associated_SNPs_13513 0 0 0 0 0 Cytosol 1 0.500231643931502 1 0.999536712136996 hm5C_site_15390 DeepMRMD:1;iRNA_m5C:0.999536712136996 15391 chr19 19618398 19618398 1 + G T rs148458424 19618382 + 19618362 19618402 41 CCGAGCCGCACCTGCCGGCCCCCAGCCCCAGCTCCAGCTCC CCGAGCCGCACCTGCCGGCCCCCAGCCCCAGCTCCATCTCC < 41bp 1 0.35192072003809 1 0.117430537939072 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GATAD2A ENSG00000167491 UTR3 Human protein_coding chr19:19618382 chr19:19618398 . . 0 37 hm5C_associated_SNPs_13514 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15391 DeepMRMD:1;iRNA_m5C:0.999536712157815 15392 chr19 19618398 19618398 1 + G T rs148458424 19618383 + 19618363 19618403 41 CGAGCCGCACCTGCCGGCCCCCAGCCCCAGCTCCAGCTCCT CGAGCCGCACCTGCCGGCCCCCAGCCCCAGCTCCATCTCCT < 41bp 1 0.172886681094627 1 0.104454874992371 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GATAD2A ENSG00000167491 UTR3 Human protein_coding chr19:19618383 chr19:19618398 . . 0 36 hm5C_associated_SNPs_13515 0 0 0 0 0 Cytosol 1 0.500231643927256 1 0.999536712145488 hm5C_site_15392 DeepMRMD:1;iRNA_m5C:0.999536712145488 15393 chr19 19618398 19618398 1 + G T rs148458424 19618384 + 19618364 19618404 41 GAGCCGCACCTGCCGGCCCCCAGCCCCAGCTCCAGCTCCTG GAGCCGCACCTGCCGGCCCCCAGCCCCAGCTCCATCTCCTG < 41bp 1 0.453772821447973 1 0.572164535522461 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GATAD2A ENSG00000167491 UTR3 Human protein_coding chr19:19618384 chr19:19618398 . . 0 35 hm5C_associated_SNPs_13516 0 0 0 0 0 Cytosol 1 0.500231643921092 0.855670928955078 0.999536712157815 hm5C_site_15393 DeepMRMD:0.855670928955078;iRNA_m5C:0.999536712157815 15394 chr19 19852269 19852269 1 + G A rs73924851 19852265 + 19852245 19852285 41 ACTTCAGCCCAGGTTCGATTCCTGGTCAGGGAACCAGTGCC ACTTCAGCCCAGGTTCGATTCCTGATCAGGGAACCAGTGCC < 41bp 1 0.395178735595411 1 0.317696571350098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF14;LINC00663 ENSG00000105708;ENSG00000271499 intergenic Human other chr19:19852265 chr19:19852269 . . 0 25 hm5C_associated_SNPs_13517 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15394 DeepMRMD:1;iRNA_m5C:0.999536712157815 15395 chr19 19852269 19852269 1 + G A rs73924851 19852266 + 19852246 19852286 41 CTTCAGCCCAGGTTCGATTCCTGGTCAGGGAACCAGTGCCA CTTCAGCCCAGGTTCGATTCCTGATCAGGGAACCAGTGCCA < 41bp 1 0.445448711744151 1 0.135593682527542 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF14;LINC00663 ENSG00000105708;ENSG00000271499 intergenic Human other chr19:19852266 chr19:19852269 . . 0 24 hm5C_associated_SNPs_13518 0 0 1 0 0 unknown 1 0.500231643921208 1 0.999536712157585 hm5C_site_15395 DeepMRMD:1;iRNA_m5C:0.999536712157585 15396 chr19 21241082 21241082 1 + C T rs188578845 21241078 + 21241058 21241098 41 CTGACCAACATGGTGAAATCCTGTCTCTACTAAAAATACAA CTGACCAACATGGTGAAATCCTGTTTCTACTAAAAATACAA < 41bp 1 0.286493918998919 1 0.118055254220963 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF430 ENSG00000118620 UTR3 Human protein_coding chr19:21241078 chr19:21241082 . . 0 25 hm5C_associated_SNPs_13519 0 0 0 0 0 Nucleus 1 0.500231652089404 1 0.999536695821192 hm5C_site_15396 DeepMRMD:1;iRNA_m5C:0.999536695821192 15397 chr19 21300992 21300992 1 + C G rs144995791 21300990 + 21300970 21301010 41 AATTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACA AATTCAGCAGGGCATGGTGGCTGATGCCTGTAATCCCAACA < 41bp 1 0.433921054273127 1 0.190702825784683 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300990 chr19:21300992 nonsynonymous SNV 0.030 0 23 hm5C_associated_SNPs_13520 0 0 0 0 0 Cytosol 1 0.500231657865072 1 0.999536684269856 hm5C_site_15397 DeepMRMD:1;iRNA_m5C:0.999536684269856 15398 chr19 21300992 21300992 1 + C G rs144995791 21300996 + 21300976 21301016 41 GCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGA GCAGGGCATGGTGGCTGATGCCTGTAATCCCAACACTTTGA < 41bp 1 0.176842742956865 1 0.0615488588809967 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300996 chr19:21300992 nonsynonymous SNV 0.030 0 17 hm5C_associated_SNPs_13521 0 0 0 0 0 Cytosol 1 0.500231643923195 1 0.99953671215361 hm5C_site_15398 DeepMRMD:1;iRNA_m5C:0.99953671215361 15399 chr19 21300992 21300992 1 + C G rs144995791 21300997 + 21300977 21301017 41 CAGGGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGAG CAGGGCATGGTGGCTGATGCCTGTAATCCCAACACTTTGAG < 41bp 1 0.627788648379334 1 0.115632385015488 experiment 0.744422703241331 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300997 chr19:21300992 nonsynonymous SNV 0.030 0 16 hm5C_associated_SNPs_13522 0 0 0 0 0 Cytosol 1 0.500231691341218 1 0.999536617317563 hm5C_site_15399 DeepMRMD:1;iRNA_m5C:0.999536617317563 15400 chr19 21300992 21300992 1 + C G rs144995791 21301004 + 21300984 21301024 41 TGGTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTA TGGTGGCTGATGCCTGTAATCCCAACACTTTGAGAGGACTA < 41bp 1 0.510459270300991 1 0.313982754945755 experiment 0.979081459398019 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301004 chr19:21300992 nonsynonymous SNV 0.030 0 9 hm5C_associated_SNPs_13523 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15400 DeepMRMD:1;iRNA_m5C:0.999536712157815 15401 chr19 21300992 21300992 1 + C G rs144995791 21301005 + 21300985 21301025 41 GGTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTAG GGTGGCTGATGCCTGTAATCCCAACACTTTGAGAGGACTAG < 41bp 1 0.0899041548965538 1 0.350953698158264 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301005 chr19:21300992 nonsynonymous SNV 0.030 0 8 hm5C_associated_SNPs_13524 0 0 0 0 0 Cytosol 1 0.500243727304206 1 0.999512545391589 hm5C_site_15401 DeepMRMD:1;iRNA_m5C:0.999512545391589 15402 chr19 21300992 21300992 1 + C G rs144995791 21301006 + 21300986 21301026 41 GTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTAGG GTGGCTGATGCCTGTAATCCCAACACTTTGAGAGGACTAGG < 41bp 1 0.667230484819594 1 0.277197331190109 experiment 0.665539030360812 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301006 chr19:21300992 nonsynonymous SNV 0.030 0 7 hm5C_associated_SNPs_13525 0 0 0 0 0 Cytosol 1 0.500231643920988 1 0.999536712158023 hm5C_site_15402 DeepMRMD:1;iRNA_m5C:0.999536712158023 15403 chr19 21301023 21301023 1 + T G rs111990779 21301004 + 21300984 21301024 41 TGGTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTA TGGTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACGA < 41bp 1 0.434364295652644 1 0.164830923080444 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301004 chr19:21301023 nonsynonymous SNV 0.001 0 40 hm5C_associated_SNPs_13526 0 0 1 0 0 Cytosol 1 0.500231643919075 1 0.99953671216185 hm5C_site_15403 DeepMRMD:1;iRNA_m5C:0.99953671216185 15404 chr19 21301023 21301023 1 + T G rs111990779 21301005 + 21300985 21301025 41 GGTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTAG GGTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACGAG < 41bp 1 0.0636192563007238 1 0.188514769077301 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301005 chr19:21301023 nonsynonymous SNV 0.001 0 39 hm5C_associated_SNPs_13527 0 0 1 0 0 Cytosol 1 0.500231648443297 1 0.999536703113405 hm5C_site_15404 DeepMRMD:1;iRNA_m5C:0.999536703113405 15405 chr19 21301023 21301023 1 + T G rs111990779 21301006 + 21300986 21301026 41 GTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTAGG GTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACGAGG < 41bp 1 0.666402184199112 1 0.31659659743309 experiment 0.667195631601775 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301006 chr19:21301023 nonsynonymous SNV 0.001 0 38 hm5C_associated_SNPs_13528 0 0 1 0 0 Cytosol 1 0.500231643959738 1 0.999536712080524 hm5C_site_15405 DeepMRMD:1;iRNA_m5C:0.999536712080524 15406 chr19 21305823 21305823 1 + G A rs575818564 21305839 + 21305819 21305859 41 TTGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGA TTGTAGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGA < 41bp 1 0.578645200501236 1 0.280905991792679 experiment 0.842709598997528 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 UTR3 Human protein_coding chr19:21305839 chr19:21305823 . . 0 5 hm5C_associated_SNPs_13529 0 0 0 0 0 Cytosol 1 0.500231630820491 1 0.999536738359017 hm5C_site_15406 DeepMRMD:1;iRNA_m5C:0.999536738359017 15407 chr19 21305823 21305823 1 + G A rs575818564 21305840 + 21305820 21305860 41 TGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAT TGTAGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAT < 41bp 1 0.430367322572446 1 0.61003714799881 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 UTR3 Human protein_coding chr19:21305840 chr19:21305823 . . 0 4 hm5C_associated_SNPs_13530 0 0 0 0 0 Cytosol 1 0.50023164337073 0.77992570400238 0.999536713258541 hm5C_site_15407 DeepMRMD:0.77992570400238;iRNA_m5C:0.999536713258541 15408 chr19 21305823 21305823 1 + G A rs575818564 21305841 + 21305821 21305861 41 GTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGATG GTAGCGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGATG < 41bp 1 0.678421605527918 1 0.601911187171936 experiment 0.643156788944164 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 UTR3 Human protein_coding chr19:21305841 chr19:21305823 . . 0 3 hm5C_associated_SNPs_13531 0 0 0 0 0 Cytosol 1 0.500231630372566 0.796177625656128 0.999536739254868 hm5C_site_15408 DeepMRMD:0.796177625656128;iRNA_m5C:0.999536739254868 15409 chr19 21688570 21688570 1 + A G rs191177521 21688567 + 21688547 21688587 41 ACTCCAGGACCCCCTGGAAGCCTAGAAATGGTGAGAGTGCC ACTCCAGGACCCCCTGGAAGCCTGGAAATGGTGAGAGTGCC < 41bp 1 0.513240499660258 1 0.307794511318207 experiment 0.973519000679484 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF429 ENSG00000197013 UTR5 Human protein_coding chr19:21688567 chr19:21688570 . . 0 24 hm5C_associated_SNPs_13532 0 0 0 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15409 DeepMRMD:1;iRNA_m5C:0.999536712157815 15410 chr19 24009893 24009893 1 + G A rs7245809 24009900 + 24009880 24009920 41 CTGCAGCTTTTCCGCGCTACCTGCAGAGGGGTCCATACGGC CTGCAGCTTTTCCACGCTACCTGCAGAGGGGTCCATACGGC < 41bp 1 0.694432751056763 1 0.508376181125641 experiment 0.611134497886475 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPSAP58 ENSG00000267924 ncRNA_exonic Human lincRNA chr19:24009900 chr19:24009893 . . 0 14 hm5C_associated_SNPs_13533 0 0 0 0 1 Cytosol 1 0.500231632884639 0.983247637748718 0.999536734230721 hm5C_site_15410 DeepMRMD:0.983247637748718;iRNA_m5C:0.999536734230721 15411 chr19 24010071 24010071 1 + C A rs9305011 24010069 + 24010049 24010089 41 ATCTTGACTTCCAGATGGAACACTACATCTATAAAAGGAAA ATCTTGACTTCCAGATGGAACAATACATCTATAAAAGGAAA < 41bp 1 0.254162666028013 1 0.588201761245728 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout RPSAP58 ENSG00000205246 CDS Human other chr19:24010069 chr19:24010071 nonsynonymous SNV 0.957 0 23 hm5C_associated_SNPs_13535 0 0 1 0 0 Cytosol 1 0.500231643921092 0.823596477508544 0.999536712157815 hm5C_site_15411 DeepMRMD:0.823596477508544;iRNA_m5C:0.999536712157815 15412 chr19 24010150 24010150 1 + C T rs555278603 24010154 + 24010134 24010174 41 GCTTCTGCTGGCAGCTCGTGCTATTGTTGCCATTGAAAACC GCTTCTGCTGGCAGCTTGTGCTATTGTTGCCATTGAAAACC < 41bp 1 0.267897016345707 1 0.10923770070076 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010154 chr19:24010150 nonsynonymous SNV 0.893 1 17 hm5C_associated_SNPs_13536 0 0 0 0 0 Cytosol 1 0.500231645606313 1 0.999536708787375 hm5C_site_15412 DeepMRMD:1;iRNA_m5C:0.999536708787375 15413 chr19 24010168 24010168 1 + G A rs150262364 24010154 + 24010134 24010174 41 GCTTCTGCTGGCAGCTCGTGCTATTGTTGCCATTGAAAACC GCTTCTGCTGGCAGCTCGTGCTATTGTTGCCATTAAAAACC < 41bp 1 0.206710872656132 1 0.118016719818115 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010154 chr19:24010168 nonsynonymous SNV 0.987 1 35 hm5C_associated_SNPs_13537 0 0 0 0 0 Cytosol 1 0.500231643935424 1 0.999536712129152 hm5C_site_15413 DeepMRMD:1;iRNA_m5C:0.999536712129152 15414 chr19 24010422 24010422 1 + T G rs540400554 24010423 + 24010403 24010443 41 TGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCC TGTGTAACACAGATTCTCCGCTGCGCTATGTGGACATTGCC < 41bp 1 0.431664435046555 1 0.0507863759994507 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010423 chr19:24010422 synonymous SNV . 0 20 hm5C_associated_SNPs_13539 0 0 0 0 0 Cytosol 1 0.500232102963286 1 0.999535794073428 hm5C_site_15414 DeepMRMD:1;iRNA_m5C:0.999535794073428 15415 chr19 28296516 28296516 1 + T C rs4638713 28296528 + 28296508 28296548 41 TCCAGGTCTCGCATCTGGGGCTCGATCTCGTGCAGAGGAGC TCCAGGTCCCGCATCTGGGGCTCGATCTCGTGCAGAGGAGC < 41bp 1 0.438649886785634 1 0.558993458747864 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LOC101927151 ENSG00000267323;ENSG00000267575 ncRNA_exonic Human other chr19:28296528 chr19:28296516 . . 0 9 hm5C_associated_SNPs_13540 0 0 0 0 1 unknown 1 0.50023164391447 0.882013082504272 0.999536712171059 hm5C_site_15415 DeepMRMD:0.882013082504272;iRNA_m5C:0.999536712171059 15416 chr19 28296522 28296522 1 + C G rs527376449 28296528 + 28296508 28296548 41 TCCAGGTCTCGCATCTGGGGCTCGATCTCGTGCAGAGGAGC TCCAGGTCTCGCATGTGGGGCTCGATCTCGTGCAGAGGAGC < 41bp 1 0.437062834468759 1 0.489818572998047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LOC101927151 ENSG00000267323;ENSG00000267575 ncRNA_exonic Human other chr19:28296528 chr19:28296522 . . 0 15 hm5C_associated_SNPs_13541 0 0 0 0 1 unknown 1 0.500231646433979 1 0.999536707132041 hm5C_site_15416 DeepMRMD:1;iRNA_m5C:0.999536707132041 15417 chr19 28296537 28296537 1 + G C rs149208046 28296528 + 28296508 28296548 41 TCCAGGTCTCGCATCTGGGGCTCGATCTCGTGCAGAGGAGC TCCAGGTCTCGCATCTGGGGCTCGATCTCCTGCAGAGGAGC < 41bp 1 0.439626366237074 1 0.604474723339081 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LOC101927151 ENSG00000267323;ENSG00000267575 ncRNA_exonic Human other chr19:28296528 chr19:28296537 . . 0 30 hm5C_associated_SNPs_13542 0 0 1 0 1 unknown 1 0.500231644030984 0.791050553321838 0.999536711938033 hm5C_site_15417 DeepMRMD:0.791050553321838;iRNA_m5C:0.999536711938033 15418 chr19 28296698 28296698 1 + G C rs62114567 28296706 + 28296686 28296726 41 AGCCCTGCTTCAGCACGGGGCCTGTGGGGCCCCGGTAAGTC AGCCCTGCTTCACCACGGGGCCTGTGGGGCCCCGGTAAGTC < 41bp 1 0.0540698944164098 1 0.0692661702632904 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control LOC101927151 ENSG00000267323;ENSG00000267575 ncRNA_exonic Human other chr19:28296706 chr19:28296698 . . 0 13 hm5C_associated_SNPs_13543 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15418 DeepMRMD:1;iRNA_m5C:0.999536712157815 15419 chr19 28296698 28296698 1 + G C rs62114567 28296707 + 28296687 28296727 41 GCCCTGCTTCAGCACGGGGCCTGTGGGGCCCCGGTAAGTCC GCCCTGCTTCACCACGGGGCCTGTGGGGCCCCGGTAAGTCC < 41bp 1 0.392040791828205 1 0.335968255996704 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control LOC101927151 ENSG00000267323;ENSG00000267575 ncRNA_exonic Human other chr19:28296707 chr19:28296698 . . 0 12 hm5C_associated_SNPs_13544 0 0 1 0 0 unknown 1 0.500231644664564 1 0.999536710670871 hm5C_site_15419 DeepMRMD:1;iRNA_m5C:0.999536710670871 15420 chr19 28296698 28296698 1 + G C rs62114567 28296715 + 28296695 28296735 41 TCAGCACGGGGCCTGTGGGGCCCCGGTAAGTCCCGGTGTTC TCACCACGGGGCCTGTGGGGCCCCGGTAAGTCCCGGTGTTC < 41bp 1 0.328479010459998 1 0.199256837368011 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC101927151 ENSG00000267323;ENSG00000267575 ncRNA_exonic Human other chr19:28296715 chr19:28296698 . . 0 4 hm5C_associated_SNPs_13545 0 0 1 0 0 unknown 1 0.500231643921632 1 0.999536712156737 hm5C_site_15420 DeepMRMD:1;iRNA_m5C:0.999536712156737 15421 chr19 28296698 28296698 1 + G C rs62114567 28296716 + 28296696 28296736 41 CAGCACGGGGCCTGTGGGGCCCCGGTAAGTCCCGGTGTTCC CACCACGGGGCCTGTGGGGCCCCGGTAAGTCCCGGTGTTCC < 41bp 1 0.433289630968253 1 0.429349660873413 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LOC101927151 ENSG00000267323;ENSG00000267575 ncRNA_exonic Human other chr19:28296716 chr19:28296698 . . 0 3 hm5C_associated_SNPs_13546 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15421 DeepMRMD:1;iRNA_m5C:0.999536712157815 15422 chr19 28296698 28296698 1 + G C rs62114567 28296717 + 28296697 28296737 41 AGCACGGGGCCTGTGGGGCCCCGGTAAGTCCCGGTGTTCCC ACCACGGGGCCTGTGGGGCCCCGGTAAGTCCCGGTGTTCCC < 41bp 1 0.430406945079351 1 0.413148671388626 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC101927151 ENSG00000267323;ENSG00000267575 ncRNA_exonic Human other chr19:28296717 chr19:28296698 . . 0 2 hm5C_associated_SNPs_13547 0 0 1 0 0 unknown 1 0.500231643921115 1 0.99953671215777 hm5C_site_15422 DeepMRMD:1;iRNA_m5C:0.99953671215777 15423 chr19 28296698 28296698 1 + G C rs62114567 28296718 + 28296698 28296738 41 GCACGGGGCCTGTGGGGCCCCGGTAAGTCCCGGTGTTCCCG CCACGGGGCCTGTGGGGCCCCGGTAAGTCCCGGTGTTCCCG < 41bp 1 0.660647942019696 1 0.731532335281372 experiment 0.678704115960608 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC101927151 ENSG00000267323;ENSG00000267575 ncRNA_exonic Human other chr19:28296718 chr19:28296698 . . 0 1 hm5C_associated_SNPs_13548 0 0 1 0 0 unknown 1 0.500231643921092 0.536935329437256 0.999536712157815 hm5C_site_15423 DeepMRMD:0.536935329437256;iRNA_m5C:0.999536712157815 15424 chr19 30097214 30097214 1 + A G rs199911160 30097216 + 30097196 30097236 41 TCATCAGAGAGCGCCGGAAGCGGTCCGAGAATGAAGAGTAA TCATCAGAGAGCGCCGGAGGCGGTCCGAGAATGAAGAGTAA < 41bp 1 0.543410742281022 1 0.488448530435562 experiment 0.913178515437956 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control POP4 ENSG00000105171 UTR5 Human protein_coding chr19:30097216 chr19:30097214 . . 0 19 hm5C_associated_SNPs_13549 0 0 1 0 0 Ribosome 1 0.50023164392106 1 0.99953671215788 hm5C_site_15424 DeepMRMD:1;iRNA_m5C:0.99953671215788 15425 chr19 30097231 30097231 1 + G A rs150671362 30097216 + 30097196 30097236 41 TCATCAGAGAGCGCCGGAAGCGGTCCGAGAATGAAGAGTAA TCATCAGAGAGCGCCGGAAGCGGTCCGAGAATGAAAAGTAA < 41bp 1 0.595619905612459 1 0.605425477027893 experiment 0.808760188775081 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control POP4 ENSG00000105171 CDS Human protein_coding chr19:30097216 chr19:30097231 synonymous SNV . 0 36 hm5C_associated_SNPs_13550 0 0 1 0 0 Ribosome 1 0.50023164411935 0.789149045944214 0.999536711761301 hm5C_site_15425 DeepMRMD:0.789149045944214;iRNA_m5C:0.999536711761301 15426 chr19 30164864 30164864 1 + G A rs149662980 30164884 + 30164864 30164904 41 GGCGTGCTGACCAAAGAGTGCCGCAAGAAGGCCAAGCCGCG AGCGTGCTGACCAAAGAGTGCCGCAAGAAGGCCAAGCCGCG < 41bp 1 0.288481294218079 1 0.120748817920685 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLEKHF1 ENSG00000166289 CDS Human protein_coding chr19:30164884 chr19:30164864 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_13551 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15426 DeepMRMD:1;iRNA_m5C:0.999536712157815 15427 chr19 30506116 30506116 1 + C A rs166731 30506096 + 30506076 30506116 41 ATCCTGAGTTACTTTGGCAACAAGTTCTTTTACCCTTACCC ATCCTGAGTTACTTTGGCAACAAGTTCTTTTACCCTTACCA < 41bp 1 0.449697597133791 1 0.397938102483749 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control URI1 ENSG00000105176 UTR3 Human protein_coding chr19:30506096 chr19:30506116 . . 0 41 hm5C_associated_SNPs_13552 0 0 1 0 0 Cytosol 1 0.500231643926765 1 0.99953671214647 hm5C_site_15427 DeepMRMD:1;iRNA_m5C:0.99953671214647 15428 chr19 30936296 30936296 1 + A T rs61746682 30936308 + 30936288 30936328 41 TTTTTGTCACACGGGCTGAACCAGACTCTCGAGTATAACCT TTTTTGTCTCACGGGCTGAACCAGACTCTCGAGTATAACCT < 41bp 1 0.344061679658093 1 0.1205213367939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936308 chr19:30936296 synonymous SNV . 0 9 hm5C_associated_SNPs_13553 0 0 1 0 0 exosome 1 0.500231643924206 1 0.999536712151587 hm5C_site_15428 DeepMRMD:1;iRNA_m5C:0.999536712151587 15429 chr19 32876535 32876535 1 + A G rs191775092 32876548 + 32876528 32876568 41 CTGGGCAACACGGGGAGACCCTGTCTCTACAAGAAATTAAA CTGGGCAGCACGGGGAGACCCTGTCTCTACAAGAAATTAAA < 41bp 1 0.347760336545004 1 0.2271349132061 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF507 ENSG00000168813 UTR3 Human protein_coding chr19:32876548 chr19:32876535 . . 0 8 hm5C_associated_SNPs_13554 0 0 0 0 0 Cytosol 1 0.500231644365588 1 0.999536711268825 hm5C_site_15429 DeepMRMD:1;iRNA_m5C:0.999536711268825 15430 chr19 32876538 32876538 1 + C T rs556747386 32876548 + 32876528 32876568 41 CTGGGCAACACGGGGAGACCCTGTCTCTACAAGAAATTAAA CTGGGCAACATGGGGAGACCCTGTCTCTACAAGAAATTAAA < 41bp 1 0.313853055577682 1 0.143652647733688 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF507 ENSG00000168813 UTR3 Human protein_coding chr19:32876548 chr19:32876538 . . 0 11 hm5C_associated_SNPs_13555 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_15430 DeepMRMD:1;iRNA_m5C:0.999536712157815 15431 chr19 32973077 32973077 1 + C T rs7253039 32973083 + 32973063 32973103 41 AACCTGCCTCCCTACGTGGCCTACTTCACCAGAGTGTTCCA AACCTGCCTCCCTATGTGGCCTACTTCACCAGAGTGTTCCA < 41bp 1 0.199028989206463 1 0.0518320798873901 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32973083 chr19:32973077 synonymous SNV . 0 15 hm5C_associated_SNPs_13556 0 0 1 0 1 cytosol 1 0.500231643861174 1 0.999536712277652 hm5C_site_15431 DeepMRMD:1;iRNA_m5C:0.999536712277652 15432 chr19 33202721 33202721 1 + C G rs202188892 33202731 + 33202711 33202751 41 GAAAAAAAGACTGAGGAAATCATGAAGGAAGGCAAGCAGTT GAAAAAAAGAGTGAGGAAATCATGAAGGAAGGCAAGCAGTT < 41bp 1 0.616120394844534 1 0.352740168571472 experiment 0.767759210310933 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NUDT19 ENSG00000213965 CDS Human protein_coding chr19:33202731 chr19:33202721 nonsynonymous SNV 0.975 0 11 hm5C_associated_SNPs_13557 0 0 1 0 1 Ribosome 1 0.500231639821387 1 0.999536720357225 hm5C_site_15432 DeepMRMD:1;iRNA_m5C:0.999536720357225 15433 chr19 33203392 33203392 1 + A G rs187420283 33203372 + 33203352 33203392 41 GCAGTGGCCCAATCTCGGCTCACTGCAACCTCCACCTCCCA GCAGTGGCCCAATCTCGGCTCACTGCAACCTCCACCTCCCG < 41bp 1 0.573286898954391 1 0.0189563035964966 experiment 0.853426202091218 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUDT19 ENSG00000213965 UTR3 Human protein_coding chr19:33203372 chr19:33203392 . . 0 41 hm5C_associated_SNPs_13558 0 0 1 0 0 Ribosome 1 0.500231569373923 1 0.999536861252153 hm5C_site_15433 DeepMRMD:1;iRNA_m5C:0.999536861252153 15434 chr19 33203392 33203392 1 + A G rs187420283 33203380 + 33203360 33203400 41 CCAATCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCCAG CCAATCTCGGCTCACTGCAACCTCCACCTCCCGGGTTCCAG < 41bp 1 0.0698212229179429 1 0.224424421787262 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUDT19 ENSG00000213965 UTR3 Human protein_coding chr19:33203380 chr19:33203392 . . 0 33 hm5C_associated_SNPs_13559 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15434 DeepMRMD:1;iRNA_m5C:0.999536712157815 15435 chr19 33203392 33203392 1 + A G rs187420283 33203386 + 33203366 33203406 41 TCGGCTCACTGCAACCTCCACCTCCCAGGTTCCAGCGATTC TCGGCTCACTGCAACCTCCACCTCCCGGGTTCCAGCGATTC < 41bp 1 0.0658006587628232 1 0.0610297918319702 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUDT19 ENSG00000213965 UTR3 Human protein_coding chr19:33203386 chr19:33203392 . . 0 27 hm5C_associated_SNPs_13561 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15435 DeepMRMD:1;iRNA_m5C:0.999536712157815 15436 chr19 33465006 33465006 1 + G A rs78628256 33465022 + 33465002 33465042 41 ACCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT ACCCAGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT < 41bp 1 0.151696249660628 1 0.111209124326706 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465022 chr19:33465006 nonsynonymous SNV 0.377 0 5 hm5C_associated_SNPs_13562 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_15436 DeepMRMD:1;iRNA_m5C:0.999536712157816 15437 chr19 33465034 33465034 1 + A G rs146829849 33465022 + 33465002 33465042 41 ACCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT ACCCGGATGAGTGAACAATACTTCCCAGCCCTGCAGAAGTT < 41bp 1 0.168217427881005 1 0.181355088949203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465022 chr19:33465034 synonymous SNV . 0 33 hm5C_associated_SNPs_13563 0 0 1 0 2 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_15437 DeepMRMD:1;iRNA_m5C:0.999536712157815 15438 chr19 33467676 33467676 1 + G A rs55853151 33467675 + 33467655 33467695 41 TAAAAACCAAGAGAATGGGCCGGGTGCACTGGCTCACGCCT TAAAAACCAAGAGAATGGGCCAGGTGCACTGGCTCACGCCT < 41bp 1 0.654706112957801 1 0.735170364379883 experiment 0.690587774084399 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FAAP24 ENSG00000131944 UTR3 Human protein_coding chr19:33467675 chr19:33467676 . . 0 22 hm5C_associated_SNPs_13564 0 0 1 0 0 cytosol 1 0.500231644269767 0.529659271240234 0.999536711460466 hm5C_site_15438 DeepMRMD:0.529659271240234;iRNA_m5C:0.999536711460466 15439 chr19 33795467 33795467 1 + G A rs186271451 33795476 + 33795456 33795496 41 GGCTGATGAATGTGTGGGGGCGACAATGGCAAGGAGTGGGA GGCTGATGAATATGTGGGGGCGACAATGGCAAGGAGTGGGA < 41bp 1 0.632740393583765 1 0.251716673374176 experiment 0.73451921283247 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEBPA-AS1 ENSG00000178863;ENSG00000267296 ncRNA_exonic Human other chr19:33795476 chr19:33795467 . . 0 12 hm5C_associated_SNPs_13566 0 0 1 0 0 unknown 1 0.500231644021438 1 0.999536711957124 hm5C_site_15439 DeepMRMD:1;iRNA_m5C:0.999536711957124 15440 chr19 33872734 33872734 1 + G A rs74341460 33872738 + 33872718 33872758 41 AACTTTTGGAAAAATGGGTTCAAGCTTTCCTATTAGCCATG AACTTTTGGAAAAATGAGTTCAAGCTTTCCTATTAGCCATG < 41bp 1 0.499656887888224 1 0.181505411863327 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEBPG ENSG00000153879 UTR3 Human protein_coding chr19:33872738 chr19:33872734 . . 0 17 hm5C_associated_SNPs_13567 0 0 1 0 0 Cytosol 1 0.50022719738377 1 0.99954560523246 hm5C_site_15440 DeepMRMD:1;iRNA_m5C:0.99954560523246 15441 chr19 34302354 34302354 1 + C T rs144406308 34302343 + 34302323 34302363 41 AAGGCCCTCATCGAGGAGGTCTTCCCCGAGACCGGAGACGT AAGGCCCTCATCGAGGAGGTCTTCCCCGAGATCGGAGACGT < 41bp 1 0.113430153365073 1 0.0258401930332184 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34302343 chr19:34302354 nonsynonymous SNV 0.936 1 32 hm5C_associated_SNPs_13568 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15441 DeepMRMD:1;iRNA_m5C:0.999536712157815 15442 chr19 34302972 34302972 1 + G A rs147704309 34302963 + 34302943 34302983 41 AGTGAGGGCCTATTTTCCAACAGCTCTTCGCAGACCCAAGA AGTGAGGGCCTATTTTCCAACAGCTCTTCACAGACCCAAGA < 41bp 1 0.320675711881726 1 0.346780598163605 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCTD15 ENSG00000153885 UTR3 Human protein_coding chr19:34302963 chr19:34302972 . . 0 30 hm5C_associated_SNPs_13569 0 0 0 0 0 Cytosol 1 0.500231627252038 1 0.999536745495925 hm5C_site_15442 DeepMRMD:1;iRNA_m5C:0.999536745495925 15443 chr19 34304668 34304668 1 + C T rs561662711 34304686 + 34304666 34304706 41 CACGTTACCTCAGGAATGGGCCCCACCATGAAGGGGCCCAT CATGTTACCTCAGGAATGGGCCCCACCATGAAGGGGCCCAT < 41bp 1 0.443907414508898 1 0.0649523735046387 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCTD15 ENSG00000153885 UTR3 Human protein_coding chr19:34304686 chr19:34304668 . . 0 3 hm5C_associated_SNPs_13570 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15443 DeepMRMD:1;iRNA_m5C:0.999536712157815 15444 chr19 34304668 34304668 1 + C T rs561662711 34304687 + 34304667 34304707 41 ACGTTACCTCAGGAATGGGCCCCACCATGAAGGGGCCCATC ATGTTACCTCAGGAATGGGCCCCACCATGAAGGGGCCCATC < 41bp 1 0.0724196060818477 1 0.0325369238853455 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCTD15 ENSG00000153885 UTR3 Human protein_coding chr19:34304687 chr19:34304668 . . 0 2 hm5C_associated_SNPs_13571 0 0 1 0 0 Cytosol 1 0.500231643951441 1 0.999536712097118 hm5C_site_15444 DeepMRMD:1;iRNA_m5C:0.999536712097118 15445 chr19 34304668 34304668 1 + C T rs561662711 34304688 + 34304668 34304708 41 CGTTACCTCAGGAATGGGCCCCACCATGAAGGGGCCCATCT TGTTACCTCAGGAATGGGCCCCACCATGAAGGGGCCCATCT < 41bp 1 0.134300701156276 1 0.0633639395236969 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCTD15 ENSG00000153885 UTR3 Human protein_coding chr19:34304688 chr19:34304668 . . 0 1 hm5C_associated_SNPs_13572 0 0 1 0 0 Cytosol 1 0.500231643921082 1 0.999536712157836 hm5C_site_15445 DeepMRMD:1;iRNA_m5C:0.999536712157836 15446 chr19 34843980 34843980 1 + C G rs538485719 34843967 + 34843947 34843987 41 ACACCAGCCCCTCAGAGGACCAGTGCGCCCCATCCCAGGGA ACACCAGCCCCTCAGAGGACCAGTGCGCCCCATGCCAGGGA < 41bp 1 0.449014693772484 1 0.550292789936066 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA0355 ENSG00000267219 ncRNA_intronic Human antisense chr19:34843967 chr19:34843980 . . 0 34 hm5C_associated_SNPs_13574 0 0 1 0 0 Cytosol 1 0.500231656541418 0.899414420127868 0.999536686917163 hm5C_site_15446 DeepMRMD:0.899414420127868;iRNA_m5C:0.999536686917163 15447 chr19 34868642 34868642 1 + A G rs1801015 34868643 + 34868623 34868663 41 GCTATGTCTCCCCGCAGGGACCCCTCATGGTGACTGAAGCC GCTATGTCTCCCCGCAGGGGCCCCTCATGGTGACTGAAGCC < 41bp 1 0.0692805902265842 1 0.0913734138011932 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868643 chr19:34868642 synonymous SNV . 0 20 hm5C_associated_SNPs_13575 1 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15447 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 15448 chr19 34868642 34868642 1 + A G rs1801015 34868644 + 34868624 34868664 41 CTATGTCTCCCCGCAGGGACCCCTCATGGTGACTGAAGCCC CTATGTCTCCCCGCAGGGGCCCCTCATGGTGACTGAAGCCC < 41bp 1 0.0341949408758276 1 0.0517958700656891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868644 chr19:34868642 synonymous SNV . 0 19 hm5C_associated_SNPs_13576 1 0 1 0 1 Ribosome 1 0.500231591851754 1 0.999536816296491 hm5C_site_15448 DeepMRMD:1;iRNA_m5C:0.999536816296491 not specified not specified 15449 chr19 34868642 34868642 1 + A G rs1801015 34868645 + 34868625 34868665 41 TATGTCTCCCCGCAGGGACCCCTCATGGTGACTGAAGCCCT TATGTCTCCCCGCAGGGGCCCCTCATGGTGACTGAAGCCCT < 41bp 1 0.105440405164696 1 0.181873351335526 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868645 chr19:34868642 synonymous SNV . 0 18 hm5C_associated_SNPs_13577 1 0 1 0 1 Ribosome 1 0.500231643921304 1 0.999536712157392 hm5C_site_15449 DeepMRMD:1;iRNA_m5C:0.999536712157392 not specified not specified 15450 chr19 34868776 34868776 1 + T C rs8191371 34868761 + 34868741 34868781 41 GGCCCAGCTGAACCCCGAGTCCTCCCTGTTCATCATTGCCT GGCCCAGCTGAACCCCGAGTCCTCCCTGTTCATCACTGCCT < 41bp 1 0.0396543806095054 1 0.040453314781189 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868761 chr19:34868776 nonsynonymous SNV 0.519 5 36 hm5C_associated_SNPs_13578 1 0 1 0 1 Ribosome 1 0.500231643918227 1 0.999536712163545 hm5C_site_15450 DeepMRMD:1;iRNA_m5C:0.999536712163545 not specified not specified 15451 chr19 34884795 34884795 1 + C G rs112683259 34884810 + 34884790 34884830 41 AGCTCCCACTCATCCTGCTCCTGTTTCAGGACCAGCACTTC AGCTCGCACTCATCCTGCTCCTGTTTCAGGACCAGCACTTC < 41bp 1 0.151230183442906 1 0.201515197753906 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPI ENSG00000105220 intronic Human protein_coding chr19:34884810 chr19:34884795 . . 0 6 hm5C_associated_SNPs_13579 0 0 1 0 0 Ribosome 1 0.500231644000186 1 0.999536711999628 hm5C_site_15451 DeepMRMD:1;iRNA_m5C:0.999536711999628 15452 chr19 34891772 34891772 1 + C T rs539152330 34891752 + 34891732 34891772 41 CTATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAC CTATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAT < 41bp 1 0.50368239043212 1 0.349236726760864 experiment 0.992635219135759 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34891752 chr19:34891772 . . 0 41 hm5C_associated_SNPs_13580 0 0 1 0 0 Ribosome 1 0.500231949073776 1 0.999536101852447 hm5C_site_15452 DeepMRMD:1;iRNA_m5C:0.999536101852447 15453 chr19 34891772 34891772 1 + C T rs539152330 34891753 + 34891733 34891773 41 TATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACACG TATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACATG < 41bp 1 0.204755130689886 1 0.551311850547791 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34891753 chr19:34891772 . . 0 40 hm5C_associated_SNPs_13581 0 0 1 0 0 Ribosome 1 0.500231643921092 0.897376298904418 0.999536712157815 hm5C_site_15453 DeepMRMD:0.897376298904418;iRNA_m5C:0.999536712157815 15454 chr19 34891772 34891772 1 + C T rs539152330 34891754 + 34891734 34891774 41 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACACGG ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACATGG < 41bp 1 0.57251295868135 1 0.479038178920746 experiment 0.854974082637299 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34891754 chr19:34891772 . . 0 39 hm5C_associated_SNPs_13582 0 0 1 0 0 Ribosome 1 0.50023164392012 1 0.99953671215976 hm5C_site_15454 DeepMRMD:1;iRNA_m5C:0.99953671215976 15455 chr19 34891856 34891856 1 + C T rs147161659 34891848 + 34891828 34891868 41 ACCATGTTGGGCAGGCTGGTCTTGAACTCCTGACCTCAGGT ACCATGTTGGGCAGGCTGGTCTTGAACTTCTGACCTCAGGT < 41bp 1 0.506699023054096 1 0.39112788438797 experiment 0.986601953891807 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34891848 chr19:34891856 . . 0 29 hm5C_associated_SNPs_13583 0 0 0 0 0 Ribosome 1 0.500231643919928 1 0.999536712160145 hm5C_site_15455 DeepMRMD:1;iRNA_m5C:0.999536712160145 15456 chr19 34891856 34891856 1 + C T rs147161659 34891854 + 34891834 34891874 41 TTGGGCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTG TTGGGCAGGCTGGTCTTGAACTTCTGACCTCAGGTGATCTG < 41bp 1 0.284416551506474 1 0.034029632806778 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34891854 chr19:34891856 . . 0 23 hm5C_associated_SNPs_13584 0 0 0 0 0 Ribosome 1 0.500231643952542 1 0.999536712094915 hm5C_site_15456 DeepMRMD:1;iRNA_m5C:0.999536712094915 15457 chr19 34891856 34891856 1 + C T rs147161659 34891857 + 34891837 34891877 41 GGCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCC GGCAGGCTGGTCTTGAACTTCTGACCTCAGGTGATCTGCCC < 41bp 1 0.377190130199648 1 0.555307626724243 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34891857 chr19:34891856 . . 0 20 hm5C_associated_SNPs_13585 0 0 0 0 0 Ribosome 1 0.500231645445459 0.889384746551514 0.999536709109082 hm5C_site_15457 DeepMRMD:0.889384746551514;iRNA_m5C:0.999536709109082 15458 chr19 34891856 34891856 1 + C T rs147161659 34891861 + 34891841 34891881 41 GGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCCGCCT GGCTGGTCTTGAACTTCTGACCTCAGGTGATCTGCCCGCCT < 41bp 1 0.197358287079549 1 0.146321415901184 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34891861 chr19:34891856 . . 0 16 hm5C_associated_SNPs_13586 0 0 0 0 0 Ribosome 1 0.50023164392107 1 0.99953671215786 hm5C_site_15458 DeepMRMD:1;iRNA_m5C:0.99953671215786 15459 chr19 34892417 34892417 1 + C T rs531562389 34892414 + 34892394 34892434 41 GGGATTACAGGCGTGAGCCACCGCGCCCAGCAAGGCGGGTC GGGATTACAGGCGTGAGCCACCGTGCCCAGCAAGGCGGGTC < 41bp 1 0.324283842547315 1 0.422531366348267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34892414 chr19:34892417 . . 0 24 hm5C_associated_SNPs_13589 0 0 1 0 0 Ribosome 1 0.500231640682718 1 0.999536718634565 hm5C_site_15459 DeepMRMD:1;iRNA_m5C:0.999536718634565 15460 chr19 34893009 34893009 1 + C T rs117782236 34892993 + 34892973 34893013 41 CAAAGTGCTGGGATTACAGGCGTGAGTCACCGCGCCCGGCT CAAAGTGCTGGGATTACAGGCGTGAGTCACCGCGCCTGGCT < 41bp 1 0.649459046550363 1 0.438807219266891 experiment 0.701081906899274 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34892993 chr19:34893009 . . 0 37 hm5C_associated_SNPs_13590 0 0 1 0 0 Ribosome 1 0.500231643920764 1 0.999536712158473 hm5C_site_15460 DeepMRMD:1;iRNA_m5C:0.999536712158473 15461 chr19 34893009 34893009 1 + C T rs117782236 34893000 + 34892980 34893020 41 CTGGGATTACAGGCGTGAGTCACCGCGCCCGGCTCATTTTA CTGGGATTACAGGCGTGAGTCACCGCGCCTGGCTCATTTTA < 41bp 1 0.48323862508751 1 0.618626713752747 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893000 chr19:34893009 . . 0 30 hm5C_associated_SNPs_13591 0 0 1 0 0 Ribosome 1 0.500231644000902 0.762746572494506 0.999536711998196 hm5C_site_15461 DeepMRMD:0.762746572494506;iRNA_m5C:0.999536711998196 15462 chr19 34893009 34893009 1 + C T rs117782236 34893002 + 34892982 34893022 41 GGGATTACAGGCGTGAGTCACCGCGCCCGGCTCATTTTAAA GGGATTACAGGCGTGAGTCACCGCGCCTGGCTCATTTTAAA < 41bp 1 0.334169199196839 1 0.716130971908569 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893002 chr19:34893009 . . 0 28 hm5C_associated_SNPs_13592 0 0 1 0 0 Ribosome 1 0.50023149602587 0.567738056182862 0.99953700794826 hm5C_site_15462 DeepMRMD:0.567738056182862;iRNA_m5C:0.99953700794826 15463 chr19 34893009 34893009 1 + C T rs117782236 34893003 + 34892983 34893023 41 GGATTACAGGCGTGAGTCACCGCGCCCGGCTCATTTTAAAA GGATTACAGGCGTGAGTCACCGCGCCTGGCTCATTTTAAAA < 41bp 1 0.428542771505189 1 0.445573359727859 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893003 chr19:34893009 . . 0 27 hm5C_associated_SNPs_13593 0 0 1 0 0 Ribosome 1 0.500231643921087 1 0.999536712157826 hm5C_site_15463 DeepMRMD:1;iRNA_m5C:0.999536712157826 15464 chr19 34893009 34893009 1 + C T rs117782236 34893005 + 34892985 34893025 41 ATTACAGGCGTGAGTCACCGCGCCCGGCTCATTTTAAAATT ATTACAGGCGTGAGTCACCGCGCCTGGCTCATTTTAAAATT < 41bp 1 0.422210090555167 1 0.171571850776672 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893005 chr19:34893009 . . 0 25 hm5C_associated_SNPs_13594 0 0 1 0 0 Ribosome 1 0.500231613405969 1 0.999536773188062 hm5C_site_15464 DeepMRMD:1;iRNA_m5C:0.999536773188062 15465 chr19 34893009 34893009 1 + C T rs117782236 34893007 + 34892987 34893027 41 TACAGGCGTGAGTCACCGCGCCCGGCTCATTTTAAAATTTT TACAGGCGTGAGTCACCGCGCCTGGCTCATTTTAAAATTTT < 41bp 1 0.101834009547838 1 0.364064395427704 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893007 chr19:34893009 . . 0 23 hm5C_associated_SNPs_13595 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_15465 DeepMRMD:1;iRNA_m5C:0.999536712157815 15466 chr19 34893009 34893009 1 + C T rs117782236 34893008 + 34892988 34893028 41 ACAGGCGTGAGTCACCGCGCCCGGCTCATTTTAAAATTTTT ACAGGCGTGAGTCACCGCGCCTGGCTCATTTTAAAATTTTT < 41bp 1 0.184272472858329 1 0.252963423728943 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893008 chr19:34893009 . . 0 22 hm5C_associated_SNPs_13596 0 0 1 0 0 Ribosome 1 0.500228398418008 1 0.999543203163983 hm5C_site_15466 DeepMRMD:1;iRNA_m5C:0.999543203163983 15467 chr19 34893020 34893020 1 + A G rs75203280 34893000 + 34892980 34893020 41 CTGGGATTACAGGCGTGAGTCACCGCGCCCGGCTCATTTTA CTGGGATTACAGGCGTGAGTCACCGCGCCCGGCTCATTTTG < 41bp 1 0.521119591775887 1 0.773657202720642 experiment 0.957760816448227 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893000 chr19:34893020 . . 0 41 hm5C_associated_SNPs_13597 0 0 1 0 0 Ribosome 1 0.500227680993812 0.452685594558716 0.999544638012376 hm5C_site_15467 DeepMRMD:0.452685594558716;iRNA_m5C:0.999544638012376 15468 chr19 34893020 34893020 1 + A G rs75203280 34893002 + 34892982 34893022 41 GGGATTACAGGCGTGAGTCACCGCGCCCGGCTCATTTTAAA GGGATTACAGGCGTGAGTCACCGCGCCCGGCTCATTTTGAA < 41bp 1 0.383455632477492 1 0.577892184257507 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893002 chr19:34893020 . . 0 39 hm5C_associated_SNPs_13598 0 0 1 0 0 Ribosome 1 0.500249849529719 0.844215631484986 0.999500300940563 hm5C_site_15468 DeepMRMD:0.844215631484986;iRNA_m5C:0.999500300940563 15469 chr19 34893020 34893020 1 + A G rs75203280 34893003 + 34892983 34893023 41 GGATTACAGGCGTGAGTCACCGCGCCCGGCTCATTTTAAAA GGATTACAGGCGTGAGTCACCGCGCCCGGCTCATTTTGAAA < 41bp 1 0.38876846003728 1 0.451696515083313 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893003 chr19:34893020 . . 0 38 hm5C_associated_SNPs_13599 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15469 DeepMRMD:1;iRNA_m5C:0.999536712157815 15470 chr19 34893020 34893020 1 + A G rs75203280 34893005 + 34892985 34893025 41 ATTACAGGCGTGAGTCACCGCGCCCGGCTCATTTTAAAATT ATTACAGGCGTGAGTCACCGCGCCCGGCTCATTTTGAAATT < 41bp 1 0.364950193943154 1 0.175459742546082 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893005 chr19:34893020 . . 0 36 hm5C_associated_SNPs_13600 0 0 1 0 0 Ribosome 1 0.500231643921136 1 0.999536712157729 hm5C_site_15470 DeepMRMD:1;iRNA_m5C:0.999536712157729 15471 chr19 34893020 34893020 1 + A G rs75203280 34893007 + 34892987 34893027 41 TACAGGCGTGAGTCACCGCGCCCGGCTCATTTTAAAATTTT TACAGGCGTGAGTCACCGCGCCCGGCTCATTTTGAAATTTT < 41bp 1 0.211333479783504 1 0.390177965164185 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893007 chr19:34893020 . . 0 34 hm5C_associated_SNPs_13601 0 0 1 0 0 Ribosome 1 0.50023164469264 1 0.999536710614721 hm5C_site_15471 DeepMRMD:1;iRNA_m5C:0.999536710614721 15472 chr19 34893020 34893020 1 + A G rs75203280 34893008 + 34892988 34893028 41 ACAGGCGTGAGTCACCGCGCCCGGCTCATTTTAAAATTTTT ACAGGCGTGAGTCACCGCGCCCGGCTCATTTTGAAATTTTT < 41bp 1 0.101012646008259 1 0.213017046451569 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893008 chr19:34893020 . . 0 33 hm5C_associated_SNPs_13602 0 0 1 0 0 Ribosome 1 0.500052462229436 1 0.999895075541127 hm5C_site_15472 DeepMRMD:1;iRNA_m5C:0.999895075541127 15473 chr19 34893020 34893020 1 + A G rs75203280 34893009 + 34892989 34893029 41 CAGGCGTGAGTCACCGCGCCCGGCTCATTTTAAAATTTTTG CAGGCGTGAGTCACCGCGCCCGGCTCATTTTGAAATTTTTG < 41bp 1 0.149304424108785 1 0.180521339178085 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPI ENSG00000105220 UTR3 Human protein_coding chr19:34893009 chr19:34893020 . . 0 32 hm5C_associated_SNPs_13603 0 0 1 0 0 Ribosome 1 0.500231645515817 1 0.999536708968366 hm5C_site_15473 DeepMRMD:1;iRNA_m5C:0.999536708968366 15474 chr19 34895337 34895337 1 + T C rs185898814 34895331 + 34895311 34895351 41 GTTTTCACCTGGTCGCCCGGCGGCCATGGCGGCCGTTCTGA GTTTTCACCTGGTCGCCCGGCGGCCACGGCGGCCGTTCTGA < 41bp 1 0.57181880304838 1 0.784583449363708 experiment 0.856362393903241 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD2L ENSG00000126249 CDS Human protein_coding chr19:34895331 chr19:34895337 nonsynonymous SNV 0.158 4 27 hm5C_associated_SNPs_13604 0 0 1 0 0 Ribosome 1 0.500231643921093 0.430833101272584 0.999536712157815 hm5C_site_15474 DeepMRMD:0.430833101272584;iRNA_m5C:0.999536712157815 15475 chr19 34954979 34954979 1 + G A rs373551149 34954995 + 34954975 34955015 41 AGCCGGCTTCAAGCAGATGACTTCCTCCAGGACTATACTTT AGCCAGCTTCAAGCAGATGACTTCCTCCAGGACTATACTTT < 41bp 1 0.146372299939911 1 0.0165172815322876 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34954995 chr19:34954979 nonsynonymous SNV 0.992 0 5 hm5C_associated_SNPs_13605 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_15475 DeepMRMD:1;iRNA_m5C:0.999536712157816 15476 chr19 34959979 34959979 1 + A G rs7259160 34959978 + 34959958 34959998 41 TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA TGACGTTCTCATAGTTGATTCGGATGAAGAAGATTCTTCAA < 41bp 1 0.515941466280125 1 0.226070016622543 experiment 0.968117067439751 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34959978 chr19:34959979 synonymous SNV . 0 22 hm5C_associated_SNPs_13606 0 0 1 0 1 Cytosol 1 0.500231643920871 1 0.999536712158259 hm5C_site_15476 DeepMRMD:1;iRNA_m5C:0.999536712158259 15477 chr19 34959998 34959998 1 + A C rs78770631 34959978 + 34959958 34959998 41 TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAC < 41bp 1 0.474085612452019 1 0.290874063968658 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34959978 chr19:34959998 nonsynonymous SNV 0.957 1 41 hm5C_associated_SNPs_13607 0 0 1 0 1 Cytosol 1 0.500231643898583 1 0.999536712202833 hm5C_site_15477 DeepMRMD:1;iRNA_m5C:0.999536712202833 15478 chr19 34991239 34991239 1 + G A rs563982598 34991227 + 34991207 34991247 41 GTGTGGGTGTGGAGGGAGGGCCCGCGTGGGTGGCCCTGGTC GTGTGGGTGTGGAGGGAGGGCCCGCGTGGGTGACCCTGGTC < 41bp 1 0.599967867887938 1 0.385064244270325 experiment 0.800064264224125 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WTIP ENSG00000142279 UTR3 Human protein_coding chr19:34991227 chr19:34991239 . . 0 33 hm5C_associated_SNPs_13608 0 0 1 0 0 nucleus 1 0.50023164392137 1 0.999536712157261 hm5C_site_15478 DeepMRMD:1;iRNA_m5C:0.999536712157261 15479 chr19 34991239 34991239 1 + G A rs563982598 34991228 + 34991208 34991248 41 TGTGGGTGTGGAGGGAGGGCCCGCGTGGGTGGCCCTGGTCA TGTGGGTGTGGAGGGAGGGCCCGCGTGGGTGACCCTGGTCA < 41bp 1 0.549394015405592 1 0.421017289161682 experiment 0.901211969188816 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WTIP ENSG00000142279 UTR3 Human protein_coding chr19:34991228 chr19:34991239 . . 0 32 hm5C_associated_SNPs_13609 0 0 1 0 0 nucleus 1 0.500239025048579 1 0.999521949902842 hm5C_site_15479 DeepMRMD:1;iRNA_m5C:0.999521949902842 15480 chr19 35504556 35504556 1 + G A rs146626930 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACACCCAACCTTTCCCGAGCCAGCAGCGA < 41bp 1 0.0204136352915167 1 0.0469517111778259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504556 synonymous SNV . 0 15 hm5C_associated_SNPs_13611 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920521 1 0.999536712158958 hm5C_site_15480 DeepMRMD:1;iRNA_m5C:0.999536712158958 15481 chr19 35504580 35504580 1 + C T rs115996530 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGTGA < 41bp 1 0.0178676278513316 1 0.0554539263248444 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504580 synonymous SNV . 0 39 hm5C_associated_SNPs_13613 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643865482 1 0.999536712269035 hm5C_site_15481 DeepMRMD:1;iRNA_m5C:0.999536712269035 15482 chr19 35741258 35741258 1 + C T rs141731488 35741270 + 35741250 35741290 41 AACCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCT AACCCCTATCACGTGGTGATCCTCTTCCAGCCTGTGACCCT < 41bp 1 0.101866727848207 1 0.0124954283237457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741270 chr19:35741258 nonsynonymous SNV 0.807 0 9 hm5C_associated_SNPs_13616 0 0 1 0 2 chromatin 1 0.500231643921163 1 0.999536712157674 hm5C_site_15482 DeepMRMD:1;iRNA_m5C:0.999536712157674 15483 chr19 35773534 35773534 1 + C T rs145846674 35773554 + 35773534 35773574 41 CGCCAGCCTGACCAGTGGCTCTGTTTTCCCACAACAGGTGA TGCCAGCCTGACCAGTGGCTCTGTTTTCCCACAACAGGTGA < 41bp 1 0.365300790822522 1 0.113521546125412 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HAMP ENSG00000105697 CDS Human protein_coding chr19:35773554 chr19:35773534 synonymous SNV . 0 1 hm5C_associated_SNPs_13620 1 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_15483 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hemochromatosis type 1 Hemochromatosis type 1 15484 chr19 35828890 35828890 1 + G A rs200525155 35828874 + 35828854 35828894 41 GAAGTACTGCTGTCAGGTCTCCAATGACGTGGGCCCGGGAA GAAGTACTGCTGTCAGGTCTCCAATGACGTGGGCCCAGGAA < 41bp 1 0.274045622528109 1 0.745311260223389 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD22 ENSG00000012124 CDS Human protein_coding chr19:35828874 chr19:35828890 synonymous SNV . 0 37 hm5C_associated_SNPs_13621 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643931499 0.509377479553222 0.999536712137002 hm5C_site_15484 DeepMRMD:0.509377479553222;iRNA_m5C:0.999536712137002 15485 chr19 36066767 36066767 1 + G A rs148138218 36066751 + 36066731 36066771 41 AACTTTAAATGGGCAAGAAGCCCAGCTAGCTCAGTCGGTAG AACTTTAAATGGGCAAGAAGCCCAGCTAGCTCAGTCAGTAG < 41bp 1 0.326719186871445 1 0.180447936058044 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ATP4A;LINC01766 ENSG00000105675;ENSG00000224910 intergenic Human other chr19:36066751 chr19:36066767 . . 0 37 hm5C_associated_SNPs_13622 0 0 1 0 0 unknown 1 0.50023164392126 1 0.999536712157481 hm5C_site_15485 DeepMRMD:1;iRNA_m5C:0.999536712157481 15486 chr19 36066767 36066767 1 + G A rs148138218 36066752 + 36066732 36066772 41 ACTTTAAATGGGCAAGAAGCCCAGCTAGCTCAGTCGGTAGA ACTTTAAATGGGCAAGAAGCCCAGCTAGCTCAGTCAGTAGA < 41bp 1 0.218342448593337 1 0.128813236951828 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ATP4A;LINC01766 ENSG00000105675;ENSG00000224910 intergenic Human other chr19:36066752 chr19:36066767 . . 0 36 hm5C_associated_SNPs_13623 0 0 1 0 0 unknown 1 0.500231644438406 1 0.999536711123188 hm5C_site_15486 DeepMRMD:1;iRNA_m5C:0.999536711123188 15487 chr19 36066767 36066767 1 + G A rs148138218 36066753 + 36066733 36066773 41 CTTTAAATGGGCAAGAAGCCCAGCTAGCTCAGTCGGTAGAG CTTTAAATGGGCAAGAAGCCCAGCTAGCTCAGTCAGTAGAG < 41bp 1 0.496569370422473 1 0.130264073610306 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ATP4A;LINC01766 ENSG00000105675;ENSG00000224910 intergenic Human other chr19:36066753 chr19:36066767 . . 0 35 hm5C_associated_SNPs_13624 0 0 1 0 0 unknown 1 0.500231643918798 1 0.999536712162404 hm5C_site_15487 DeepMRMD:1;iRNA_m5C:0.999536712162404 15488 chr19 36066767 36066767 1 + G A rs148138218 36066756 + 36066736 36066776 41 TAAATGGGCAAGAAGCCCAGCTAGCTCAGTCGGTAGAGCAT TAAATGGGCAAGAAGCCCAGCTAGCTCAGTCAGTAGAGCAT < 41bp 1 0.147690534648541 1 0.109528183937073 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control ATP4A;LINC01766 ENSG00000105675;ENSG00000224910 intergenic Human other chr19:36066756 chr19:36066767 . . 0 32 hm5C_associated_SNPs_13625 0 0 1 0 0 unknown 1 0.500231643590662 1 0.999536712818676 hm5C_site_15488 DeepMRMD:1;iRNA_m5C:0.999536712818676 15489 chr19 36066767 36066767 1 + G A rs148138218 36066762 + 36066742 36066782 41 GGCAAGAAGCCCAGCTAGCTCAGTCGGTAGAGCATAAGACT GGCAAGAAGCCCAGCTAGCTCAGTCAGTAGAGCATAAGACT < 41bp 1 0.200795739438678 1 0.460006415843964 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ATP4A;LINC01766 ENSG00000105675;ENSG00000224910 intergenic Human other chr19:36066762 chr19:36066767 . . 0 26 hm5C_associated_SNPs_13626 0 0 1 0 0 unknown 1 0.500231643921446 1 0.999536712157109 hm5C_site_15489 DeepMRMD:1;iRNA_m5C:0.999536712157109 15490 chr19 36066778 36066778 1 + A G rs570993125 36066762 + 36066742 36066782 41 GGCAAGAAGCCCAGCTAGCTCAGTCGGTAGAGCATAAGACT GGCAAGAAGCCCAGCTAGCTCAGTCGGTAGAGCATAGGACT < 41bp 1 0.288171942907132 1 0.492672055959702 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target ATP4A;LINC01766 ENSG00000105675;ENSG00000224910 intergenic Human other chr19:36066762 chr19:36066778 . . 0 37 hm5C_associated_SNPs_13627 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15490 DeepMRMD:1;iRNA_m5C:0.999536712157815 15491 chr19 36104786 36104786 1 + C G rs147078031 36104795 + 36104775 36104815 41 TCAAGAAGATCCGGGGAAACCTACTCTGGTAACTGCTTCTT TCAAGAAGATCGGGGGAAACCTACTCTGGTAACTGCTTCTT < 41bp 1 0.556229813031398 1 0.131229341030121 experiment 0.887540373937204 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36104795 chr19:36104786 nonsynonymous SNV 0.983 2 12 hm5C_associated_SNPs_13628 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15491 DeepMRMD:1;iRNA_m5C:0.999536712157815 15492 chr19 36128510 36128510 1 + G A rs115413794 36128495 + 36128475 36128515 41 CGCTCCCACCTGGCCGGGCGCTGGCTCCTCCCTCAGTTCTC CGCTCCCACCTGGCCGGGCGCTGGCTCCTCCCTCAATTCTC < 41bp 1 0.562284912814567 1 0.170330315828323 experiment 0.875430174370867 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM42 ENSG00000126254 UTR3 Human protein_coding chr19:36128495 chr19:36128510 . . 0 36 hm5C_associated_SNPs_13629 0 0 1 2 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_15492 DeepMRMD:1;iRNA_m5C:0.999536712157816 15493 chr19 36142187 36142187 1 + C T rs7991 36142189 + 36142169 36142209 41 AATCAAGAACTACAAGACCGCCCCTTTTGACAGCCGCTTCC AATCAAGAACTACAAGACTGCCCCTTTTGACAGCCGCTTCC < 41bp 1 0.290548172341959 1 0.0407769680023193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142189 chr19:36142187 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_13630 2 0 1 0 2 Ribosome 1 0.500231643920996 1 0.999536712158007 hm5C_site_15493 DeepMRMD:1;iRNA_m5C:0.999536712158007 not specified not specified 15494 chr19 36216701 36216701 1 + G A rs146372727 36216704 + 36216684 36216724 41 TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG TATCCAACCCGGGCCACACGCAAACGGCGCCACTGGGTGAG < 41bp 1 0.229110230937744 1 0.472459077835083 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216704 chr19:36216701 synonymous SNV . 0 18 hm5C_associated_SNPs_13631 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_15494 DeepMRMD:1;iRNA_m5C:0.999536712157815 15495 chr19 36227616 36227616 1 + G A rs138094783 36227620 + 36227600 36227640 41 CGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG CGAGCTCTGAGGAAGAACCTCCATCCCCAGATGATAAAGAG < 41bp 1 0.00945782867395756 1 0.194140583276749 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227620 chr19:36227616 synonymous SNV . 0 17 hm5C_associated_SNPs_13632 0 0 1 0 1 chromatin 1 0.500231644243628 1 0.999536711512743 hm5C_site_15495 DeepMRMD:1;iRNA_m5C:0.999536711512743 15496 chr19 36278118 36278118 1 + G A rs202050153 36278132 + 36278112 36278152 41 TCCTGCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC TCCTGCACCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC < 41bp 1 0.178798143395757 1 0.243954569101334 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278132 chr19:36278118 nonsynonymous SNV 0.971 1 7 hm5C_associated_SNPs_13633 0 0 1 0 1 chromatin 1 0.500231643921167 1 0.999536712157666 hm5C_site_15496 DeepMRMD:1;iRNA_m5C:0.999536712157666 15497 chr19 36278119 36278119 1 + C A rs551584144 36278132 + 36278112 36278152 41 TCCTGCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC TCCTGCGACCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC < 41bp 1 0.186311340062004 1 0.420599639415741 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278132 chr19:36278119 synonymous SNV . 0 8 hm5C_associated_SNPs_13634 0 0 1 0 1 chromatin 1 0.500231643921096 1 0.999536712157809 hm5C_site_15497 DeepMRMD:1;iRNA_m5C:0.999536712157809 15498 chr19 36370352 36370352 1 + C T rs2871778 36370340 + 36370320 36370360 41 CGCTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC CGCTTCCTGGAGGAACGACCCTGACCCGGCCCTCTTCACCC < 41bp 1 0.444352458208298 1 0.0509443879127502 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP1 ENSG00000105290 UTR3 Human protein_coding chr19:36370340 chr19:36370352 . . 0 33 hm5C_associated_SNPs_13635 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643913212 1 0.999536712173576 hm5C_site_15498 DeepMRMD:1;iRNA_m5C:0.999536712173576 15499 chr19 36435935 36435935 1 + C A rs552870079 36435917 + 36435897 36435937 41 CGGCCACGAACCTGTGGGACCCTAGCCAGGCGCCCCCCCCT CGGCCACGAACCTGTGGGACCCTAGCCAGGCGCCCCCCACT < 41bp 1 0.13661162624639 1 0.0662969648838043 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRFN3 ENSG00000126243 UTR3 Human protein_coding chr19:36435917 chr19:36435935 . . 0 39 hm5C_associated_SNPs_13637 0 0 1 0 0 nucleus 1 0.500231540468693 1 0.999536919062615 hm5C_site_15499 DeepMRMD:1;iRNA_m5C:0.999536919062615 15500 chr19 36510140 36510140 1 + G A rs186345002 36510139 + 36510119 36510159 41 ATCGTTCTTGCCCTCAGGTTCGTCCAGCTCCACGCCCACCC ATCGTTCTTGCCCTCAGGTTCATCCAGCTCCACGCCCACCC < 41bp 1 0.179403731388053 1 0.0380126237869263 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510139 chr19:36510140 synonymous SNV . 0 22 hm5C_associated_SNPs_13638 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15500 DeepMRMD:1;iRNA_m5C:0.999536712157815 15501 chr19 36510140 36510140 1 + G A rs186345002 36510143 + 36510123 36510163 41 TTCTTGCCCTCAGGTTCGTCCAGCTCCACGCCCACCCACTG TTCTTGCCCTCAGGTTCATCCAGCTCCACGCCCACCCACTG < 41bp 1 0.518870774110207 1 0.788121461868286 experiment 0.962258451779587 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510143 chr19:36510140 synonymous SNV . 0 18 hm5C_associated_SNPs_13639 0 0 0 0 1 unknown 1 0.500231643921092 0.423757076263428 0.999536712157816 hm5C_site_15501 DeepMRMD:0.423757076263428;iRNA_m5C:0.999536712157816 15502 chr19 36572460 36572460 1 + C T rs148667984 36572466 + 36572446 36572486 41 CACTGGCAGAAAAACATCTTCAGCAATGTGAGTGGCTTCCT CACTGGCAGAAAAATATCTTCAGCAATGTGAGTGGCTTCCT < 41bp 1 0.524171833097201 1 0.266712486743927 experiment 0.951656333805599 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36572466 chr19:36572460 synonymous SNV . 0 15 hm5C_associated_SNPs_13640 2 0 1 0 1 Nucleus 1 0.500233856940977 1 0.999532286118045 hm5C_site_15502 DeepMRMD:1;iRNA_m5C:0.999532286118045 not specified not specified 15503 chr19 36593915 36593915 1 + T G rs61741470 36593911 + 36593891 36593931 41 TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGCGGAAGC TGAAGTCTCCAGAGGTCAAGCTCAGGGACCGAGGCGGAAGC < 41bp 1 0.491350524127261 1 0.468126326799393 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593911 chr19:36593915 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_13641 2 0 1 0 2 Nucleus 1 0.500231643920393 1 0.999536712159213 hm5C_site_15503 DeepMRMD:1;iRNA_m5C:0.999536712159213 not specified not specified 15504 chr19 36593915 36593915 1 + T G rs61741470 36593920 + 36593900 36593940 41 CAGAGGTCAAGCTCATGGACCGAGGCGGAAGCCAGCCCAGA CAGAGGTCAAGCTCAGGGACCGAGGCGGAAGCCAGCCCAGA < 41bp 1 0.452231429316259 1 0.806230247020721 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593920 chr19:36593915 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_13642 2 0 1 0 2 Nucleus 1 0.500231643920994 0.387539505958558 0.999536712158012 hm5C_site_15504 DeepMRMD:0.387539505958558;iRNA_m5C:0.999536712158012 not specified not specified 15505 chr19 36594063 36594063 1 + C A rs17851502 36594068 + 36594048 36594088 41 GTGCCTGCAGGTCCTCGCTGCAGGGAAGGCTGAAGAGACCC GTGCCTGCAGGTCCTAGCTGCAGGGAAGGCTGAAGAGACCC < 41bp 1 0.594202441424898 1 0.886410057544708 experiment 0.811595117150204 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594068 chr19:36594063 synonymous SNV . 0 16 hm5C_associated_SNPs_13643 0 0 1 0 2 Nucleus 1 0.500231643921076 0.227179884910584 0.999536712157848 hm5C_site_15505 DeepMRMD:0.227179884910584;iRNA_m5C:0.999536712157848 15506 chr19 36605981 36605981 1 + C T rs574083522 36605985 - 36605965 36606005 41 TACTATTCTGTAAACTGAGGCGGCGATGCCCAAAAATTGGA TACTATTCTGTAAACTGAGGCGGCAATGCCCAAAAATTGGA < 41bp 1 0.28563831114058 1 0.428865879774094 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLR2I;TBCB ENSG00000105254;ENSG00000105258 UTR5 Human other chr19:36605985 chr19:36605981 . . 0 25 hm5C_associated_SNPs_13644 0 0 1 0 0 unknown 1 0.500231643916255 1 0.999536712167491 hm5C_site_15506 DeepMRMD:1;iRNA_m5C:0.999536712167491 15507 chr19 36606060 36606060 1 + G C rs533334515 36606050 - 36606030 36606070 41 CCTGGATGCTCAGTGTTTTGCGGTTTACGATGCGCATCGTT CCTGGATGCTGAGTGTTTTGCGGTTTACGATGCGCATCGTT < 41bp 1 0.298206247960575 1 0.522433519363403 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLR2I;TBCB ENSG00000105254;ENSG00000105258 UTR5 Human other chr19:36606050 chr19:36606060 . . 0 11 hm5C_associated_SNPs_13645 0 0 1 0 0 unknown 1 0.500231643921086 0.955132961273194 0.999536712157828 hm5C_site_15507 DeepMRMD:0.955132961273194;iRNA_m5C:0.999536712157828 15508 chr19 38571961 38571961 1 + G A rs77088685 38571948 + 38571928 38571968 41 CTGGCGGGCGACCACAGCTACTGCCTGCTCTGCGCTACTGA CTGGCGGGCGACCACAGCTACTGCCTGCTCTGCACTACTGA < 41bp 1 0.160318854805036 1 0.14638763666153 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SIPA1L3 ENSG00000105738 UTR5 Human protein_coding chr19:38571948 chr19:38571961 . . 0 34 hm5C_associated_SNPs_13646 0 0 1 0 1 Ribosome 1 0.500231698228774 1 0.999536603542451 hm5C_site_15508 DeepMRMD:1;iRNA_m5C:0.999536603542451 15509 chr19 38573333 38573333 1 + C T rs61729132 38573353 + 38573333 38573373 41 CGCCGCCTCGGCCATGGCCTCCCTCACGGCCTCGCGGGCCC TGCCGCCTCGGCCATGGCCTCCCTCACGGCCTCGCGGGCCC < 41bp 1 0.0806962882409554 1 0.0541912615299225 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38573353 chr19:38573333 synonymous SNV . 0 1 hm5C_associated_SNPs_13647 0 0 1 0 0 Ribosome 1 0.500231643920114 1 0.999536712159772 hm5C_site_15509 DeepMRMD:1;iRNA_m5C:0.999536712159772 15510 chr19 38573347 38573347 1 + T C rs61729133 38573353 + 38573333 38573373 41 CGCCGCCTCGGCCATGGCCTCCCTCACGGCCTCGCGGGCCC CGCCGCCTCGGCCACGGCCTCCCTCACGGCCTCGCGGGCCC < 41bp 1 0.0812265298990172 1 0.0821130573749542 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38573353 chr19:38573347 nonsynonymous SNV 0.181 0 15 hm5C_associated_SNPs_13648 0 0 1 0 0 Ribosome 1 0.500231643921087 1 0.999536712157826 hm5C_site_15510 DeepMRMD:1;iRNA_m5C:0.999536712157826 15511 chr19 38573357 38573357 1 + C G rs61729134 38573353 + 38573333 38573373 41 CGCCGCCTCGGCCATGGCCTCCCTCACGGCCTCGCGGGCCC CGCCGCCTCGGCCATGGCCTCCCTGACGGCCTCGCGGGCCC < 41bp 1 0.212888083983549 1 0.286471158266068 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38573353 chr19:38573357 synonymous SNV . 0 25 hm5C_associated_SNPs_13649 0 0 1 0 0 Ribosome 1 0.500231643926334 1 0.999536712147331 hm5C_site_15511 DeepMRMD:1;iRNA_m5C:0.999536712147331 15512 chr19 38573366 38573366 1 + G A rs61729135 38573353 + 38573333 38573373 41 CGCCGCCTCGGCCATGGCCTCCCTCACGGCCTCGCGGGCCC CGCCGCCTCGGCCATGGCCTCCCTCACGGCCTCACGGGCCC < 41bp 1 0.0692524122169479 1 0.0727284550666809 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38573353 chr19:38573366 synonymous SNV . 0 34 hm5C_associated_SNPs_13650 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15512 DeepMRMD:1;iRNA_m5C:0.999536712157815 15513 chr19 38655327 38655327 1 + G A rs61729146 38655333 + 38655313 38655353 41 GGCCAAGGCTCCACGGCCCGCCAAGCCACACAAGCCCCCTG GGCCAAGGCTCCACAGCCCGCCAAGCCACACAAGCCCCCTG < 41bp 1 0.131060512336528 1 0.719368517398834 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38655333 chr19:38655327 nonsynonymous SNV 0.152 0 15 hm5C_associated_SNPs_13651 0 0 0 0 0 Ribosome 1 0.500231643921092 0.561262965202332 0.999536712157815 hm5C_site_15513 DeepMRMD:0.561262965202332;iRNA_m5C:0.999536712157815 15514 chr19 38655346 38655346 1 + G A rs138370331 38655333 + 38655313 38655353 41 GGCCAAGGCTCCACGGCCCGCCAAGCCACACAAGCCCCCTG GGCCAAGGCTCCACGGCCCGCCAAGCCACACAAACCCCCTG < 41bp 1 0.115954964987522 1 0.667443990707397 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38655333 chr19:38655346 synonymous SNV . 0 34 hm5C_associated_SNPs_13652 0 0 0 0 0 Ribosome 1 0.500231643921514 0.665112018585206 0.999536712156973 hm5C_site_15514 DeepMRMD:0.665112018585206;iRNA_m5C:0.999536712156973 15515 chr19 38697296 38697296 1 + C A rs146447659 38697309 + 38697289 38697329 41 AAAGTTGCGGCTTGTGGGGCCGAGGCCCCTGCATGAAAAGT AAAGTTGAGGCTTGTGGGGCCGAGGCCCCTGCATGAAAAGT < 41bp 1 0.141449868149758 1 0.568834602832794 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIPA1L3 ENSG00000105738 UTR3 Human protein_coding chr19:38697309 chr19:38697296 . . 0 8 hm5C_associated_SNPs_13653 0 0 0 0 0 Ribosome 1 0.500231643921092 0.862330794334412 0.999536712157815 hm5C_site_15515 DeepMRMD:0.862330794334412;iRNA_m5C:0.999536712157815 15516 chr19 38871622 38871622 1 + C T rs11541756 38871607 + 38871587 38871627 41 ATCCCCGCCGAGAGCTACACCTTCTTCATTGACATCCTGCT ATCCCCGCCGAGAGCTACACCTTCTTCATTGACATTCTGCT < 41bp 1 0.111498690551802 1 0.0282100141048431 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38871607 chr19:38871622 synonymous SNV . 0 36 hm5C_associated_SNPs_13654 0 0 1 0 2 Ribosome 1 0.500233958425399 1 0.999532083149202 hm5C_site_15516 DeepMRMD:1;iRNA_m5C:0.999532083149202 15517 chr19 39109861 39109861 1 + C G rs2232994 39109876 + 39109856 39109896 41 CGTGCCGGGTCAGTGTTAGCCTCCAGCCCTGGTTGTGGAAG CGTGCGGGGTCAGTGTTAGCCTCCAGCCCTGGTTGTGGAAG < 41bp 1 0.696093505548157 1 0.985603630542755 experiment 0.607812988903686 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 UTR5 Human protein_coding chr19:39109876 chr19:39109861 . . 0 6 hm5C_associated_SNPs_13655 0 0 1 0 0 Cytosol 1 0.500231494149221 0.02879273891449 0.999537011701558 hm5C_site_15517 DeepMRMD:0.02879273891449;iRNA_m5C:0.999537011701558 15518 chr19 39109861 39109861 1 + C G rs2232994 39109878 + 39109858 39109898 41 TGCCGGGTCAGTGTTAGCCTCCAGCCCTGGTTGTGGAAGGC TGCGGGGTCAGTGTTAGCCTCCAGCCCTGGTTGTGGAAGGC < 41bp 1 0.264849043671154 1 0.590351223945618 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 UTR5 Human protein_coding chr19:39109878 chr19:39109861 . . 0 4 hm5C_associated_SNPs_13656 0 0 1 0 0 Cytosol 1 0.500240199371777 0.819297552108764 0.999519601256447 hm5C_site_15518 DeepMRMD:0.819297552108764;iRNA_m5C:0.999519601256447 15519 chr19 39109861 39109861 1 + C G rs2232994 39109879 + 39109859 39109899 41 GCCGGGTCAGTGTTAGCCTCCAGCCCTGGTTGTGGAAGGCG GCGGGGTCAGTGTTAGCCTCCAGCCCTGGTTGTGGAAGGCG < 41bp 1 0.380579303274429 1 0.327955961227417 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 UTR5 Human protein_coding chr19:39109879 chr19:39109861 . . 0 3 hm5C_associated_SNPs_13657 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15519 DeepMRMD:1;iRNA_m5C:0.999536712157815 15520 chr19 39109862 39109862 1 + G A rs2232995 39109878 + 39109858 39109898 41 TGCCGGGTCAGTGTTAGCCTCCAGCCCTGGTTGTGGAAGGC TGCCAGGTCAGTGTTAGCCTCCAGCCCTGGTTGTGGAAGGC < 41bp 1 0.259890938721203 1 0.555396676063538 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 UTR5 Human protein_coding chr19:39109878 chr19:39109862 . . 0 5 hm5C_associated_SNPs_13659 0 0 1 0 0 Cytosol 1 0.500231310806143 0.889206647872924 0.999537378387714 hm5C_site_15520 DeepMRMD:0.889206647872924;iRNA_m5C:0.999537378387714 15521 chr19 39109862 39109862 1 + G A rs2232995 39109879 + 39109859 39109899 41 GCCGGGTCAGTGTTAGCCTCCAGCCCTGGTTGTGGAAGGCG GCCAGGTCAGTGTTAGCCTCCAGCCCTGGTTGTGGAAGGCG < 41bp 1 0.351925933469151 1 0.220101565122604 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 UTR5 Human protein_coding chr19:39109879 chr19:39109862 . . 0 4 hm5C_associated_SNPs_13660 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_15521 DeepMRMD:1;iRNA_m5C:0.999536712157816 15522 chr19 39125677 39125677 1 + G A rs138580388 39125675 + 39125655 39125695 41 GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCT GAGCAAATACGGCTGGAGTGCCAACGAGTCGGGGCAGATCT < 41bp 1 0.156068151473686 1 0.364366769790649 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125675 chr19:39125677 nonsynonymous SNV 0.662 1 23 hm5C_associated_SNPs_13662 0 0 1 0 2 Cytosol 1 0.500231643806272 1 0.999536712387455 hm5C_site_15522 DeepMRMD:1;iRNA_m5C:0.999536712387455 15523 chr19 39125677 39125677 1 + G A rs138580388 39125679 + 39125659 39125699 41 AAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCTTCAT AAATACGGCTGGAGTGCCAACGAGTCGGGGCAGATCTTCAT < 41bp 1 0.667640740655721 1 0.631798028945923 experiment 0.664718518688558 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125679 chr19:39125677 nonsynonymous SNV 0.662 1 19 hm5C_associated_SNPs_13663 0 0 1 0 2 Cytosol 1 0.500231643921092 0.736403942108154 0.999536712157815 hm5C_site_15523 DeepMRMD:0.736403942108154;iRNA_m5C:0.999536712157815 15524 chr19 39215172 39215172 1 + T C rs12986337 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGCGCCGCCAGTTCGCCAGCCAGGCCAACGTTGTGGGGCC < 41bp 1 0.348714971383035 1 0.71685928106308 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215172 synonymous SNV . 0 30 hm5C_associated_SNPs_13665 1 0 1 0 1 Nucleus 1 0.500231643921092 0.56628143787384 0.999536712157815 hm5C_site_15524 DeepMRMD:0.56628143787384;iRNA_m5C:0.999536712157815 not specified not specified 15525 chr19 39215172 39215172 1 + T C rs12986337 39215169 + 39215149 39215189 41 CGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT CGCCAGTTCGCCAGCCAGGCCAACGTTGTGGGGCCCTGGAT < 41bp 1 0.456183176742751 1 0.0534429848194122 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215169 chr19:39215172 synonymous SNV . 0 24 hm5C_associated_SNPs_13666 1 0 1 0 1 Nucleus 1 0.500231643903777 1 0.999536712192445 hm5C_site_15525 DeepMRMD:1;iRNA_m5C:0.999536712192445 not specified not specified 15526 chr19 39215172 39215172 1 + T C rs12986337 39215182 + 39215162 39215202 41 GCCAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATG GCCAGGCCAACGTTGTGGGGCCCTGGATCCAGACCAAGATG < 41bp 1 0.104352046794516 1 0.0367332398891449 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215182 chr19:39215172 synonymous SNV . 0 11 hm5C_associated_SNPs_13667 1 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15526 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 15527 chr19 39215172 39215172 1 + T C rs12986337 39215191 + 39215171 39215211 41 ATGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGG ACGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGG < 41bp 1 0.239533056881624 1 0.696608364582062 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215191 chr19:39215172 synonymous SNV . 0 2 hm5C_associated_SNPs_13669 1 0 1 0 1 Nucleus 1 0.500232256318023 0.606783270835876 0.999535487363953 hm5C_site_15527 DeepMRMD:0.606783270835876;iRNA_m5C:0.999535487363953 not specified not specified 15528 chr19 39215193 39215193 1 + G A rs145474119 39215182 + 39215162 39215202 41 GCCAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATG GCCAGGCCAATGTTGTGGGGCCCTGGATCCAAACCAAGATG < 41bp 1 0.10421281362232 1 0.0395486950874329 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215182 chr19:39215193 synonymous SNV . 0 32 hm5C_associated_SNPs_13670 1 0 1 0 1 Nucleus 1 0.500231643346791 1 0.999536713306418 hm5C_site_15528 DeepMRMD:1;iRNA_m5C:0.999536713306418 not specified not specified 15529 chr19 39215193 39215193 1 + G A rs145474119 39215191 + 39215171 39215211 41 ATGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGG ATGTTGTGGGGCCCTGGATCCAAACCAAGATGGAGGTGAGG < 41bp 1 0.137484863404575 1 0.230004519224167 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215191 chr19:39215193 synonymous SNV . 0 23 hm5C_associated_SNPs_13672 1 0 1 0 1 Nucleus 1 0.500226369175402 1 0.999547261649197 hm5C_site_15529 DeepMRMD:1;iRNA_m5C:0.999547261649197 not specified not specified 15530 chr19 39215193 39215193 1 + G A rs145474119 39215195 + 39215175 39215215 41 TGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGGCACG TGTGGGGCCCTGGATCCAAACCAAGATGGAGGTGAGGCACG < 41bp 1 0.347489454172836 1 0.714613795280457 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215195 chr19:39215193 synonymous SNV . 0 19 hm5C_associated_SNPs_13673 1 0 1 0 1 Nucleus 1 0.500231631013079 0.570772409439086 0.999536737973843 hm5C_site_15530 DeepMRMD:0.570772409439086;iRNA_m5C:0.999536737973843 not specified not specified 15531 chr19 39219780 39219780 1 + T C rs1136956 39219773 + 39219753 39219793 41 GACCAGGTCATCGCTTCCTTCAAGGTCTTAGCAGGGGACAA GACCAGGTCATCGCTTCCTTCAAGGTCCTAGCAGGGGACAA < 41bp 1 0.693238972659302 1 0.870664358139038 experiment 0.613522054681396 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219773 chr19:39219780 synonymous SNV . 0 28 hm5C_associated_SNPs_13674 1 0 1 0 1 Nucleus 1 0.500231643921085 0.258671283721924 0.99953671215783 hm5C_site_15531 DeepMRMD:0.258671283721924;iRNA_m5C:0.99953671215783 not specified not specified 15532 chr19 39220563 39220563 1 + C G rs372527421 39220561 + 39220541 39220581 41 ACCCACCCAGCCCCTCTCCCCTCTCTGCTCCAGACTCACTT ACCCACCCAGCCCCTCTCCCCTGTCTGCTCCAGACTCACTT < 41bp 1 0.247237250012533 1 0.0542905032634735 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ACTN4 ENSG00000130402 UTR3 Human protein_coding chr19:39220561 chr19:39220563 . . 0 23 hm5C_associated_SNPs_13675 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15532 DeepMRMD:1;iRNA_m5C:0.999536712157815 15533 chr19 39390819 39390819 1 + C T rs140517797 39390816 + 39390796 39390836 41 CCGGGGCTGTCGTGGGCTCCCCTCGTCTTCGGCTACGTCAC CCGGGGCTGTCGTGGGCTCCCCTTGTCTTCGGCTACGTCAC < 41bp 1 0.146218483734671 1 0.0868688225746155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39390816 chr19:39390819 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_13676 0 0 1 0 1 Ribosome 1 0.500231643921183 1 0.999536712157635 hm5C_site_15533 DeepMRMD:1;iRNA_m5C:0.999536712157635 15534 chr19 39421388 39421388 1 + A G rs730078 39421381 - 39421361 39421401 41 AGTGCCGCCTTGTTCCCGGTCCAAGATGGCTGCGTCCATGG AGTGCCGCCTTGTCCCCGGTCCAAGATGGCTGCGTCCATGG < 41bp 1 0.209907462412733 1 0.275477707386017 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MRPS12;SARS2 ENSG00000104835;ENSG00000128626 UTR5 Human other chr19:39421381 chr19:39421388 . . 0 14 hm5C_associated_SNPs_13677 1 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_15534 DeepMRMD:1;iRNA_m5C:0.999536712157814 Hyperuricemia, pulmonary hypertension, renal failure, and alkalosis Hyperuricemia, pulmonary hypertension, renal failure, and alkalosis 15535 chr19 39421388 39421388 1 + A G rs730078 39421385 - 39421365 39421405 41 ACGAAGTGCCGCCTTGTTCCCGGTCCAAGATGGCTGCGTCC ACGAAGTGCCGCCTTGTCCCCGGTCCAAGATGGCTGCGTCC < 41bp 1 0.206476638760713 1 0.869350790977478 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPS12;SARS2 ENSG00000104835;ENSG00000128626 UTR5 Human other chr19:39421385 chr19:39421388 . . 0 18 hm5C_associated_SNPs_13678 1 0 1 0 0 unknown 1 0.500231643921092 0.261298418045044 0.999536712157815 hm5C_site_15535 DeepMRMD:0.261298418045044;iRNA_m5C:0.999536712157815 Hyperuricemia, pulmonary hypertension, renal failure, and alkalosis Hyperuricemia, pulmonary hypertension, renal failure, and alkalosis 15536 chr19 39421820 39421820 1 + T G rs2304116 39421804 + 39421784 39421824 41 ATGAGGGCCTGTGGTTAGACCTATAGAGGTATTTCCTTTGA ATGAGGGCCTGTGGTTAGACCTATAGAGGTATTTCCGTTGA < 41bp 1 0.425382353524068 1 0.26369297504425 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS12 ENSG00000128626 UTR5 Human protein_coding chr19:39421804 chr19:39421820 . . 0 37 hm5C_associated_SNPs_13679 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15536 DeepMRMD:1;iRNA_m5C:0.999536712157815 15537 chr19 39575761 39575761 1 + A G rs374262894 39575778 + 39575758 39575798 41 GAGACCTCCCTGCCCTGCCTCTGTTGTCCCCCAGAGCACTG GAGGCCTCCCTGCCCTGCCTCTGTTGTCCCCCAGAGCACTG < 41bp 1 0.280874456683695 1 0.0717662274837494 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR5 Human protein_coding chr19:39575778 chr19:39575761 . . 0 4 hm5C_associated_SNPs_13680 0 0 0 0 0 exosome 1 0.500231643919824 1 0.999536712160352 hm5C_site_15537 DeepMRMD:1;iRNA_m5C:0.999536712160352 15538 chr19 39592138 39592138 1 + C T rs691273 39592152 + 39592132 39592172 41 CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGGAT CTACACTAACCCGCGAGGGCCTGTCCACATCATCACAGGAT < 41bp 1 0.0731860527070253 1 0.19686895608902 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592152 chr19:39592138 nonsynonymous SNV 0.414 0 7 hm5C_associated_SNPs_13681 0 0 0 0 2 exosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_15538 DeepMRMD:1;iRNA_m5C:0.999536712157818 15539 chr19 39592150 39592150 1 + G T rs141224151 39592152 + 39592132 39592172 41 CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGGAT CTACACCAACCCGCGAGGTCCTGTCCACATCATCACAGGAT < 41bp 1 0.0923441679532652 1 0.195372402667999 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592152 chr19:39592150 nonsynonymous SNV 0.460 0 19 hm5C_associated_SNPs_13682 0 0 0 0 2 exosome 1 0.500231644018179 1 0.999536711963641 hm5C_site_15539 DeepMRMD:1;iRNA_m5C:0.999536711963641 15540 chr19 39601013 39601013 1 + G A rs550171318 39601016 + 39600996 39601036 41 AGGTTTCTGCTGGCAGGGCCCCACCCTCCTGCATAGCTCTG AGGTTTCTGCTGGCAGGACCCCACCCTCCTGCATAGCTCTG < 41bp 1 0.216035824205765 1 0.28478068113327 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601016 chr19:39601013 . . 0 18 hm5C_associated_SNPs_13683 0 0 0 0 0 exosome 1 0.500231643920323 1 0.999536712159354 hm5C_site_15540 DeepMRMD:1;iRNA_m5C:0.999536712159354 15541 chr19 39601140 39601140 1 + T C rs11666332 39601142 + 39601122 39601162 41 CTGGGCTTCCTCCTCTCCTGCCCACCTGGCAAGGGCATCGC CTGGGCTTCCTCCTCTCCCGCCCACCTGGCAAGGGCATCGC < 41bp 1 0.100118821763168 1 0.0333352982997894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601142 chr19:39601140 . . 0 19 hm5C_associated_SNPs_13684 0 0 0 0 0 exosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_15541 DeepMRMD:1;iRNA_m5C:0.99953671215782 15542 chr19 39601140 39601140 1 + T C rs11666332 39601143 + 39601123 39601163 41 TGGGCTTCCTCCTCTCCTGCCCACCTGGCAAGGGCATCGCC TGGGCTTCCTCCTCTCCCGCCCACCTGGCAAGGGCATCGCC < 41bp 1 0.0499793660184919 1 0.0845451653003693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601143 chr19:39601140 . . 0 18 hm5C_associated_SNPs_13685 0 0 0 0 0 exosome 1 0.500231643919048 1 0.999536712161904 hm5C_site_15542 DeepMRMD:1;iRNA_m5C:0.999536712161904 15543 chr19 39601140 39601140 1 + T C rs11666332 39601144 + 39601124 39601164 41 GGGCTTCCTCCTCTCCTGCCCACCTGGCAAGGGCATCGCCA GGGCTTCCTCCTCTCCCGCCCACCTGGCAAGGGCATCGCCA < 41bp 1 0.316406984028686 1 0.159709930419922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601144 chr19:39601140 . . 0 17 hm5C_associated_SNPs_13686 0 0 0 0 0 exosome 1 0.500231643920229 1 0.999536712159541 hm5C_site_15543 DeepMRMD:1;iRNA_m5C:0.999536712159541 15544 chr19 39601140 39601140 1 + T C rs11666332 39601146 + 39601126 39601166 41 GCTTCCTCCTCTCCTGCCCACCTGGCAAGGGCATCGCCAGG GCTTCCTCCTCTCCCGCCCACCTGGCAAGGGCATCGCCAGG < 41bp 1 0.253240802978886 1 0.171896487474442 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601146 chr19:39601140 . . 0 15 hm5C_associated_SNPs_13687 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15544 DeepMRMD:1;iRNA_m5C:0.999536712157815 15545 chr19 39601140 39601140 1 + T C rs11666332 39601147 + 39601127 39601167 41 CTTCCTCCTCTCCTGCCCACCTGGCAAGGGCATCGCCAGGT CTTCCTCCTCTCCCGCCCACCTGGCAAGGGCATCGCCAGGT < 41bp 1 0.569734761103639 1 0.107013732194901 experiment 0.860530477792723 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601147 chr19:39601140 . . 0 14 hm5C_associated_SNPs_13688 0 0 0 0 0 exosome 1 0.500231643921104 1 0.999536712157793 hm5C_site_15545 DeepMRMD:1;iRNA_m5C:0.999536712157793 15546 chr19 39601140 39601140 1 + T C rs11666332 39601151 + 39601131 39601171 41 CTCCTCTCCTGCCCACCTGGCAAGGGCATCGCCAGGTGGGC CTCCTCTCCCGCCCACCTGGCAAGGGCATCGCCAGGTGGGC < 41bp 1 0.652765374226714 1 0.784268140792847 experiment 0.694469251546571 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601151 chr19:39601140 . . 0 10 hm5C_associated_SNPs_13689 0 0 0 0 0 exosome 1 0.500231643921092 0.431463718414306 0.999536712157815 hm5C_site_15546 DeepMRMD:0.431463718414306;iRNA_m5C:0.999536712157815 15547 chr19 39601147 39601147 1 + C T rs555701273 39601142 + 39601122 39601162 41 CTGGGCTTCCTCCTCTCCTGCCCACCTGGCAAGGGCATCGC CTGGGCTTCCTCCTCTCCTGCCCACTTGGCAAGGGCATCGC < 41bp 1 0.118996448059613 1 0.0264259874820709 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601142 chr19:39601147 . . 0 26 hm5C_associated_SNPs_13690 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15547 DeepMRMD:1;iRNA_m5C:0.999536712157815 15548 chr19 39601147 39601147 1 + C T rs555701273 39601143 + 39601123 39601163 41 TGGGCTTCCTCCTCTCCTGCCCACCTGGCAAGGGCATCGCC TGGGCTTCCTCCTCTCCTGCCCACTTGGCAAGGGCATCGCC < 41bp 1 0.100197866217117 1 0.0424964725971222 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601143 chr19:39601147 . . 0 25 hm5C_associated_SNPs_13691 0 0 0 0 0 exosome 1 0.50023164395063 1 0.999536712098739 hm5C_site_15548 DeepMRMD:1;iRNA_m5C:0.999536712098739 15549 chr19 39601147 39601147 1 + C T rs555701273 39601144 + 39601124 39601164 41 GGGCTTCCTCCTCTCCTGCCCACCTGGCAAGGGCATCGCCA GGGCTTCCTCCTCTCCTGCCCACTTGGCAAGGGCATCGCCA < 41bp 1 0.19762624652064 1 0.0488676726818085 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601144 chr19:39601147 . . 0 24 hm5C_associated_SNPs_13692 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15549 DeepMRMD:1;iRNA_m5C:0.999536712157815 15550 chr19 39601147 39601147 1 + C T rs555701273 39601146 + 39601126 39601166 41 GCTTCCTCCTCTCCTGCCCACCTGGCAAGGGCATCGCCAGG GCTTCCTCCTCTCCTGCCCACTTGGCAAGGGCATCGCCAGG < 41bp 1 0.450162893230393 1 0.112396657466888 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601146 chr19:39601147 . . 0 22 hm5C_associated_SNPs_13693 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15550 DeepMRMD:1;iRNA_m5C:0.999536712157815 15551 chr19 39601170 39601170 1 + G A rs11670186 39601151 + 39601131 39601171 41 CTCCTCTCCTGCCCACCTGGCAAGGGCATCGCCAGGTGGGC CTCCTCTCCTGCCCACCTGGCAAGGGCATCGCCAGGTGGAC < 41bp 1 0.677404656153581 1 0.771821737289429 experiment 0.645190687692837 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACP7 ENSG00000183760 UTR3 Human protein_coding chr19:39601151 chr19:39601170 . . 0 40 hm5C_associated_SNPs_13696 0 0 0 1 0 exosome 1 0.500231643921092 0.456356525421142 0.999536712157816 hm5C_site_15551 DeepMRMD:0.456356525421142;iRNA_m5C:0.999536712157816 15552 chr19 39915637 39915637 1 + G A rs31727 39915618 + 39915598 39915638 41 TGCCCTCTCCAGATACCTGGCAGCCTCATATATCAGCCAGA TGCCCTCTCCAGATACCTGGCAGCCTCATATATCAGCCAAA < 41bp 1 0.162404525105161 1 0.116248071193695 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39915618 chr19:39915637 synonymous SNV . 0 40 hm5C_associated_SNPs_13700 0 0 1 0 0 Nucleus 1 0.500231643896521 1 0.999536712206958 hm5C_site_15552 DeepMRMD:1;iRNA_m5C:0.999536712206958 15553 chr19 39918384 39918384 1 + A G rs180825910 39918393 + 39918373 39918413 41 TCACTGTCCTCATTACATTCCTAATATGCAAGTGAGCATGT TCACTGTCCTCGTTACATTCCTAATATGCAAGTGAGCATGT < 41bp 1 0.125887805693118 1 0.0772877335548401 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG2 ENSG00000269410 ncRNA_exonic Human other chr19:39918393 chr19:39918384 . . 0 12 hm5C_associated_SNPs_13701 0 0 1 4 0 Nucleus 1 0.500231056617906 1 0.999537886764189 hm5C_site_15553 DeepMRMD:1;iRNA_m5C:0.999537886764189 15554 chr19 39948371 39948371 1 + C T rs199661076 39948360 + 39948340 39948380 41 GGACCAGTGGGAGGATGGAGCAGAGGACATTCTAGAGAAAG GGACCAGTGGGAGGATGGAGCAGAGGACATTTTAGAGAAAG < 41bp 1 0.613400336492619 1 0.765747547149658 experiment 0.773199327014762 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948360 chr19:39948371 synonymous SNV . 0 32 hm5C_associated_SNPs_13702 0 0 1 0 2 Nucleus 1 0.500231643921092 0.468504905700684 0.999536712157815 hm5C_site_15554 DeepMRMD:0.468504905700684;iRNA_m5C:0.999536712157815 15555 chr19 39948371 39948371 1 + C T rs199661076 39948367 + 39948347 39948387 41 TGGGAGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTG TGGGAGGATGGAGCAGAGGACATTTTAGAGAAAGGTGTGTG < 41bp 1 0.0729502815806332 1 0.0435532629489899 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948367 chr19:39948371 synonymous SNV . 0 25 hm5C_associated_SNPs_13703 0 0 1 0 2 Nucleus 1 0.500231669472066 1 0.999536661055868 hm5C_site_15555 DeepMRMD:1;iRNA_m5C:0.999536661055868 15556 chr19 39950209 39950209 1 + C T rs142546168 39950216 + 39950196 39950236 41 TAGGGATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG TAGGGATCCCAATTTGTGGACTGTCAAATGTAAGGTATGTG < 41bp 1 0.0343661424903884 1 0.0726581811904907 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950216 chr19:39950209 synonymous SNV . 0 14 hm5C_associated_SNPs_13704 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15556 DeepMRMD:1;iRNA_m5C:0.999536712157815 15557 chr19 39950209 39950209 1 + C T rs142546168 39950220 + 39950200 39950240 41 GATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT GATCCCAATTTGTGGACTGTCAAATGTAAGGTATGTGCTCT < 41bp 1 0.404673715754206 1 0.821165025234222 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950220 chr19:39950209 synonymous SNV . 0 10 hm5C_associated_SNPs_13705 0 0 1 0 2 Nucleus 1 0.500231643921797 0.357669949531556 0.999536712156406 hm5C_site_15557 DeepMRMD:0.357669949531556;iRNA_m5C:0.999536712156406 15558 chr19 40719528 40719528 1 + G A rs200291216 40719537 + 40719517 40719557 41 CCTCCCCGGGGGCGCGGGCGCCGTGGGAGCCGACGCCGTCC CCTCCCCGGGGACGCGGGCGCCGTGGGAGCCGACGCCGTCC < 41bp 1 0.597465362346324 1 0.555964648723602 experiment 0.805069275307352 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40719537 chr19:40719528 nonsynonymous SNV 0.005 0 12 hm5C_associated_SNPs_13706 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644830524 0.888070702552796 0.999536710338952 hm5C_site_15558 DeepMRMD:0.888070702552796;iRNA_m5C:0.999536710338952 15559 chr19 40719961 40719961 1 + A C rs538403826 40719959 + 40719939 40719979 41 CCCACGCCCTCGCCCAGCACCAACCCCCTGGTGGACCTGGA CCCACGCCCTCGCCCAGCACCACCCCCCTGGTGGACCTGGA < 41bp 1 0.151179234597034 1 0.0912465155124664 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40719959 chr19:40719961 nonsynonymous SNV 0.664 1 23 hm5C_associated_SNPs_13707 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_15559 DeepMRMD:1;iRNA_m5C:0.999536712157814 15560 chr19 40873368 40873368 1 + G A rs143785129 40873380 + 40873360 40873400 41 CACCTGTAGTCCCAGCTACTCAAGAGGTTGAGGCGGGAGGA CACCTGTAATCCCAGCTACTCAAGAGGTTGAGGCGGGAGGA < 41bp 1 0.497813766995705 1 0.875486135482788 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLD3 ENSG00000105223 intronic Human protein_coding chr19:40873380 chr19:40873368 . . 0 9 hm5C_associated_SNPs_13708 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.249027729034424 0.999536712157815 hm5C_site_15560 DeepMRMD:0.249027729034424;iRNA_m5C:0.999536712157815 15561 chr19 41077996 41077996 1 + C G rs75257211 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGGATCCGGGAGCACACACGGTGGGG < 41bp 1 0.400788739539693 1 0.833225727081299 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41077996 nonsynonymous SNV 0.064 0 18 hm5C_associated_SNPs_13709 0 0 1 0 1 cytosol 1 0.50023164392108 0.333548545837402 0.99953671215784 hm5C_site_15561 DeepMRMD:0.333548545837402;iRNA_m5C:0.99953671215784 15562 chr19 41082803 41082803 1 + G A rs577265984 41082785 + 41082765 41082805 41 ACCCGGAAGTGGGTGCGGGCCAGCCGGCTCGCCCGGGGGCC ACCCGGAAGTGGGTGCGGGCCAGCCGGCTCGCCCGGGGACC < 41bp 1 0.600257996132209 1 0.461624145507812 experiment 0.799484007735582 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SHKBP1 ENSG00000160410 UTR5 Human protein_coding chr19:41082785 chr19:41082803 . . 0 39 hm5C_associated_SNPs_13710 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15562 DeepMRMD:1;iRNA_m5C:0.999536712157815 15563 chr19 41096168 41096168 1 + C T rs11878674 41096188 + 41096168 41096208 41 CGTGGACGGCTCACCCACGACAGCCTTCACAGTGCTGGAGT TGTGGACGGCTCACCCACGACAGCCTTCACAGTGCTGGAGT < 41bp 1 0.64646419996591 1 0.303036540746689 experiment 0.70707160006818 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41096188 chr19:41096168 synonymous SNV . 0 1 hm5C_associated_SNPs_13711 0 0 0 0 0 Ribosome 1 0.500231643323512 1 0.999536713352976 hm5C_site_15563 DeepMRMD:1;iRNA_m5C:0.999536713352976 15564 chr19 41096189 41096189 1 + A G rs396118 41096188 + 41096168 41096208 41 CGTGGACGGCTCACCCACGACAGCCTTCACAGTGCTGGAGT CGTGGACGGCTCACCCACGACGGCCTTCACAGTGCTGGAGT < 41bp 1 0.695656818612196 1 0.321614980697632 experiment 0.608686362775608 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41096188 chr19:41096189 synonymous SNV . 0 22 hm5C_associated_SNPs_13712 0 0 0 0 0 Ribosome 1 0.500237243731457 1 0.999525512537086 hm5C_site_15564 DeepMRMD:1;iRNA_m5C:0.999525512537086 15565 chr19 41120211 41120211 1 + C G rs200914063 41120209 + 41120189 41120229 41 CCCACATCCGACCACCCGACCTCTCTCCTCAGACGTGGACG CCCACATCCGACCACCCGACCTGTCTCCTCAGACGTGGACG < 41bp 1 0.038913565838735 1 0.00983792543411255 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LTBP4 ENSG00000090006 intronic Human protein_coding chr19:41120209 chr19:41120211 . . 0 23 hm5C_associated_SNPs_13713 1 0 1 0 0 Cytosol 1 0.500231643921127 1 0.999536712157746 hm5C_site_15565 DeepMRMD:1;iRNA_m5C:0.999536712157746 Cutis laxa with severe pulmonary, gastrointestinal, and urinary abnormalities Cutis laxa with severe pulmonary, gastrointestinal, and urinary abnormalities 15566 chr19 41306519 41306519 1 + C A rs539658301 41306503 + 41306483 41306523 41 CAGCCCGTGCCAGCCGCAGCCCCTAAGTCAGGCTCTCCCTC CAGCCCGTGCCAGCCGCAGCCCCTAAGTCAGGCTCTACCTC < 41bp 1 0.303975126313356 1 0.182761073112488 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41306503 chr19:41306519 synonymous SNV . 0 37 hm5C_associated_SNPs_13717 0 0 1 0 0 chromatin 1 0.500231645424608 1 0.999536709150785 hm5C_site_15566 DeepMRMD:1;iRNA_m5C:0.999536709150785 15567 chr19 41306555 41306555 1 + G C rs73047080 41306542 + 41306522 41306562 41 TCAGTTACCAGGGTCTTCGTCAGAGCCCTTGGAGCCTGAGC TCAGTTACCAGGGTCTTCGTCAGAGCCCTTGGACCCTGAGC < 41bp 1 0.625389840402043 1 0.953617334365845 experiment 0.749220319195914 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41306542 chr19:41306555 nonsynonymous SNV 0.976 1 34 hm5C_associated_SNPs_13718 0 0 1 0 0 chromatin 1 0.500231643921768 0.0927653312683101 0.999536712156464 hm5C_site_15567 DeepMRMD:0.0927653312683101;iRNA_m5C:0.999536712156464 15568 chr19 41510026 41510026 1 + C A rs183427203 41510016 + 41509996 41510036 41 CTTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT CTTGTGGACAAGGCTGAGGCCTTCTCTGGCAGGGGAAAAAT < 41bp 1 0.214911935307695 1 0.121584445238113 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510016 chr19:41510026 synonymous SNV . 0 31 hm5C_associated_SNPs_13719 0 0 0 0 1 Nucleus 1 0.500231643978911 1 0.999536712042179 hm5C_site_15568 DeepMRMD:1;iRNA_m5C:0.999536712042179 15569 chr19 41709437 41709437 1 + C A rs61736647 41709417 + 41709397 41709437 41 AGGCACCAAGCCTAGGGGACCGTACCCGCCTCCCTTACACC AGGCACCAAGCCTAGGGGACCGTACCCGCCTCCCTTACACA < 41bp 1 0.0466274162850983 1 0.0387084186077118 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41709417 chr19:41709437 synonymous SNV . 0 41 hm5C_associated_SNPs_13720 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15569 DeepMRMD:1;iRNA_m5C:0.999536712157815 15570 chr19 41725258 41725258 1 + C A rs369717581 41725243 + 41725223 41725263 41 GAGGGCCGGGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGG GAGGGCCGGGGACAGCCCGGCCCTGCCCCCTCCCCAGCTGG < 41bp 1 0.242952441079492 1 0.148827105760574 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725243 chr19:41725258 . . 0 36 hm5C_associated_SNPs_13722 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15570 DeepMRMD:1;iRNA_m5C:0.999536712157815 15571 chr19 41725258 41725258 1 + C A rs369717581 41725244 + 41725224 41725264 41 AGGGCCGGGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGG AGGGCCGGGGACAGCCCGGCCCTGCCCCCTCCCCAGCTGGG < 41bp 1 0.186438308175612 1 0.0999720990657806 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725244 chr19:41725258 . . 0 35 hm5C_associated_SNPs_13723 0 0 0 0 0 Nucleus 1 0.500231643921054 1 0.999536712157893 hm5C_site_15571 DeepMRMD:1;iRNA_m5C:0.999536712157893 15572 chr19 41725258 41725258 1 + C A rs369717581 41725245 + 41725225 41725265 41 GGGCCGGGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGA GGGCCGGGGACAGCCCGGCCCTGCCCCCTCCCCAGCTGGGA < 41bp 1 0.481286787975291 1 0.077099621295929 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725245 chr19:41725258 . . 0 34 hm5C_associated_SNPs_13724 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15572 DeepMRMD:1;iRNA_m5C:0.999536712157815 15573 chr19 41725258 41725258 1 + C A rs369717581 41725248 + 41725228 41725268 41 CCGGGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCC CCGGGGACAGCCCGGCCCTGCCCCCTCCCCAGCTGGGAGCC < 41bp 1 0.293960770432634 1 0.0675460994243622 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725248 chr19:41725258 . . 0 31 hm5C_associated_SNPs_13725 0 0 0 0 0 Nucleus 1 0.500231507376165 1 0.999536985247671 hm5C_site_15573 DeepMRMD:1;iRNA_m5C:0.999536985247671 15574 chr19 41725258 41725258 1 + C A rs369717581 41725249 + 41725229 41725269 41 CGGGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCCC CGGGGACAGCCCGGCCCTGCCCCCTCCCCAGCTGGGAGCCC < 41bp 1 0.38654389334335 1 0.27905398607254 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725249 chr19:41725258 . . 0 30 hm5C_associated_SNPs_13726 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15574 DeepMRMD:1;iRNA_m5C:0.999536712157815 15575 chr19 41725258 41725258 1 + C A rs369717581 41725250 + 41725230 41725270 41 GGGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCCCA GGGGACAGCCCGGCCCTGCCCCCTCCCCAGCTGGGAGCCCA < 41bp 1 0.341672509203363 1 0.0410883724689484 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725250 chr19:41725258 . . 0 29 hm5C_associated_SNPs_13727 0 0 0 0 0 Nucleus 1 0.500231545929195 1 0.999536908141611 hm5C_site_15575 DeepMRMD:1;iRNA_m5C:0.999536908141611 15576 chr19 41725258 41725258 1 + C A rs369717581 41725251 + 41725231 41725271 41 GGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCCCAA GGGACAGCCCGGCCCTGCCCCCTCCCCAGCTGGGAGCCCAA < 41bp 1 0.167574568380886 1 0.305481493473053 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725251 chr19:41725258 . . 0 28 hm5C_associated_SNPs_13728 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15576 DeepMRMD:1;iRNA_m5C:0.999536712157815 15577 chr19 41725258 41725258 1 + C A rs369717581 41725252 + 41725232 41725272 41 GGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCCCAAC GGACAGCCCGGCCCTGCCCCCTCCCCAGCTGGGAGCCCAAC < 41bp 1 0.527225368388323 1 0.188771605491638 experiment 0.945549263223355 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725252 chr19:41725258 . . 0 27 hm5C_associated_SNPs_13729 0 0 0 0 0 Nucleus 1 0.500231664456442 1 0.999536671087115 hm5C_site_15577 DeepMRMD:1;iRNA_m5C:0.999536671087115 15578 chr19 41725259 41725259 1 + G A rs199900995 41725243 + 41725223 41725263 41 GAGGGCCGGGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGG GAGGGCCGGGGACAGCCCGGCCCTGCCCCCTCCCCCACTGG < 41bp 1 0.250003933449399 1 0.14276459813118 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725243 chr19:41725259 . . 0 37 hm5C_associated_SNPs_13731 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15578 DeepMRMD:1;iRNA_m5C:0.999536712157815 15579 chr19 41725259 41725259 1 + G A rs199900995 41725244 + 41725224 41725264 41 AGGGCCGGGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGG AGGGCCGGGGACAGCCCGGCCCTGCCCCCTCCCCCACTGGG < 41bp 1 0.207330658504224 1 0.0590299069881439 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725244 chr19:41725259 . . 0 36 hm5C_associated_SNPs_13732 0 0 0 0 0 Nucleus 1 0.500231643921087 1 0.999536712157825 hm5C_site_15579 DeepMRMD:1;iRNA_m5C:0.999536712157825 15580 chr19 41725259 41725259 1 + G A rs199900995 41725245 + 41725225 41725265 41 GGGCCGGGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGA GGGCCGGGGACAGCCCGGCCCTGCCCCCTCCCCCACTGGGA < 41bp 1 0.500345701042833 1 0.0948271453380585 experiment 0.999308597914333 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725245 chr19:41725259 . . 0 35 hm5C_associated_SNPs_13733 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15580 DeepMRMD:1;iRNA_m5C:0.999536712157815 15581 chr19 41725259 41725259 1 + G A rs199900995 41725248 + 41725228 41725268 41 CCGGGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCC CCGGGGACAGCCCGGCCCTGCCCCCTCCCCCACTGGGAGCC < 41bp 1 0.288703037302178 1 0.0615608692169189 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725248 chr19:41725259 . . 0 32 hm5C_associated_SNPs_13734 0 0 0 0 0 Nucleus 1 0.500231644834924 1 0.999536710330152 hm5C_site_15581 DeepMRMD:1;iRNA_m5C:0.999536710330152 15582 chr19 41725259 41725259 1 + G A rs199900995 41725249 + 41725229 41725269 41 CGGGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCCC CGGGGACAGCCCGGCCCTGCCCCCTCCCCCACTGGGAGCCC < 41bp 1 0.397039064175883 1 0.168186396360397 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725249 chr19:41725259 . . 0 31 hm5C_associated_SNPs_13735 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15582 DeepMRMD:1;iRNA_m5C:0.999536712157815 15583 chr19 41725259 41725259 1 + G A rs199900995 41725250 + 41725230 41725270 41 GGGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCCCA GGGGACAGCCCGGCCCTGCCCCCTCCCCCACTGGGAGCCCA < 41bp 1 0.332218605124832 1 0.0611506998538971 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725250 chr19:41725259 . . 0 30 hm5C_associated_SNPs_13736 0 0 0 0 0 Nucleus 1 0.500231643921096 1 0.999536712157808 hm5C_site_15583 DeepMRMD:1;iRNA_m5C:0.999536712157808 15584 chr19 41725259 41725259 1 + G A rs199900995 41725251 + 41725231 41725271 41 GGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCCCAA GGGACAGCCCGGCCCTGCCCCCTCCCCCACTGGGAGCCCAA < 41bp 1 0.15820136069863 1 0.115281701087952 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725251 chr19:41725259 . . 0 29 hm5C_associated_SNPs_13737 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15584 DeepMRMD:1;iRNA_m5C:0.999536712157815 15585 chr19 41725259 41725259 1 + G A rs199900995 41725252 + 41725232 41725272 41 GGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCCCAAC GGACAGCCCGGCCCTGCCCCCTCCCCCACTGGGAGCCCAAC < 41bp 1 0.49185923426596 1 0.363153219223022 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725252 chr19:41725259 . . 0 28 hm5C_associated_SNPs_13738 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_15585 DeepMRMD:1;iRNA_m5C:0.999536712157815 15586 chr19 41725271 41725271 1 + A G rs10411012 41725251 + 41725231 41725271 41 GGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCCCAA GGGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCCCAG < 41bp 1 0.170676927481407 1 0.29835706949234 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725251 chr19:41725271 . . 0 41 hm5C_associated_SNPs_13739 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15586 DeepMRMD:1;iRNA_m5C:0.999536712157815 15587 chr19 41725271 41725271 1 + A G rs10411012 41725252 + 41725232 41725272 41 GGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCCCAAC GGACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCCCAGC < 41bp 1 0.499298590941406 1 0.426989912986755 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725252 chr19:41725271 . . 0 40 hm5C_associated_SNPs_13740 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15587 DeepMRMD:1;iRNA_m5C:0.999536712157815 15588 chr19 41770568 41770568 1 + C A rs201686804 41770577 + 41770557 41770597 41 CCGACGACGAACCGGGGCGACCCGGGCACATCAACGAGGAG CCGACGACGAAACGGGGCGACCCGGGCACATCAACGAGGAG < 41bp 1 0.425175064451257 1 0.223275274038315 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41770577 chr19:41770568 nonsynonymous SNV 0.327 0 12 hm5C_associated_SNPs_13741 0 0 1 0 1 Cytosol 1 0.500231643921487 1 0.999536712157025 hm5C_site_15588 DeepMRMD:1;iRNA_m5C:0.999536712157025 15589 chr19 41770568 41770568 1 + C A rs201686804 41770578 + 41770558 41770598 41 CGACGACGAACCGGGGCGACCCGGGCACATCAACGAGGAGG CGACGACGAAACGGGGCGACCCGGGCACATCAACGAGGAGG < 41bp 1 0.642256878348049 1 0.575023174285889 experiment 0.715486243303901 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41770578 chr19:41770568 nonsynonymous SNV 0.327 0 11 hm5C_associated_SNPs_13742 0 0 1 0 1 Cytosol 1 0.500231640169533 0.849953651428222 0.999536719660934 hm5C_site_15589 DeepMRMD:0.849953651428222;iRNA_m5C:0.999536719660934 15590 chr19 41770568 41770568 1 + C A rs201686804 41770579 + 41770559 41770599 41 GACGACGAACCGGGGCGACCCGGGCACATCAACGAGGAGGT GACGACGAAACGGGGCGACCCGGGCACATCAACGAGGAGGT < 41bp 1 0.684030545237365 1 0.601768493652344 experiment 0.631938909525271 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41770579 chr19:41770568 nonsynonymous SNV 0.327 0 10 hm5C_associated_SNPs_13743 0 0 1 0 1 Cytosol 1 0.500231647136873 0.796463012695312 0.999536705726254 hm5C_site_15590 DeepMRMD:0.796463012695312;iRNA_m5C:0.999536705726254 15591 chr19 41812506 41812506 1 + G A rs200198044 41812499 + 41812479 41812519 41 ACCCAGAGGCTCCCGGAGGCCCCTGCCGGCTTCCTCCACCA ACCCAGAGGCTCCCGGAGGCCCCTGCCAGCTTCCTCCACCA < 41bp 1 0.503375732264185 1 0.0974943041801453 experiment 0.993248535471631 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 UTR3 Human protein_coding chr19:41812499 chr19:41812506 . . 0 28 hm5C_associated_SNPs_13744 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15591 DeepMRMD:1;iRNA_m5C:0.999536712157815 15592 chr19 41812506 41812506 1 + G A rs200198044 41812500 + 41812480 41812520 41 CCCAGAGGCTCCCGGAGGCCCCTGCCGGCTTCCTCCACCAG CCCAGAGGCTCCCGGAGGCCCCTGCCAGCTTCCTCCACCAG < 41bp 1 0.265996225995416 1 0.0666359961032867 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 UTR3 Human protein_coding chr19:41812500 chr19:41812506 . . 0 27 hm5C_associated_SNPs_13745 0 0 1 0 0 Cytosol 1 0.500231639959836 1 0.999536720080328 hm5C_site_15592 DeepMRMD:1;iRNA_m5C:0.999536720080328 15593 chr19 42364904 42364904 1 + C G rs149249194 42364907 + 42364887 42364927 41 GTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTGAGTTTGGGG GTCAGAGCTCTGGCAGCGTTCCTCAAAAAGTGAGTTTGGGG < 41bp 1 0.216981565478202 1 0.522862672805786 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42364907 chr19:42364904 synonymous SNV . 0 18 hm5C_associated_SNPs_13746 1 0 1 0 2 Cytosol 1 0.500231643921122 0.954274654388428 0.999536712157755 hm5C_site_15593 DeepMRMD:0.954274654388428;iRNA_m5C:0.999536712157755 Diamond-Blackfan anemia Diamond-Blackfan anemia 15594 chr19 42731675 42731675 1 + C T rs536487597 42731681 + 42731661 42731701 41 AGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGG AGCACTTTGGGAGGTCGAGGCGGGCAGATCACGAGGTCAGG < 41bp 1 0.69271863077388 1 0.822906076908112 experiment 0.61456273845224 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF526 ENSG00000167625 UTR3 Human protein_coding chr19:42731681 chr19:42731675 . . 0 15 hm5C_associated_SNPs_13749 0 0 0 0 0 Cytosol 1 0.500231643921092 0.354187846183776 0.999536712157815 hm5C_site_15594 DeepMRMD:0.354187846183776;iRNA_m5C:0.999536712157815 15595 chr19 42814487 42814487 1 + C T rs201526186 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTGATCAAGTTCCAGAGCA < 41bp 1 0.168435896009252 1 0.105370163917542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814487 synonymous SNV . 0 33 hm5C_associated_SNPs_13751 0 0 0 4 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15595 DeepMRMD:1;iRNA_m5C:0.999536712157815 15596 chr19 42857179 42857179 1 + C T rs149155949 42857193 + 42857173 42857213 41 CACACCCGCCCCGGGTCCGCCAGCCCCCCGCTGCTCCCGGG CACACCTGCCCCGGGTCCGCCAGCCCCCCGCTGCTCCCGGG < 41bp 1 0.187331634289236 1 0.733616828918457 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42857193 chr19:42857179 synonymous SNV . 0 7 hm5C_associated_SNPs_13752 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921089 0.532766342163086 0.999536712157822 hm5C_site_15596 DeepMRMD:0.532766342163086;iRNA_m5C:0.999536712157822 15597 chr19 42881100 42881100 1 + C T rs76737545 42881092 + 42881072 42881112 41 CTTTGTTCTGCATTCAGCAGCTATTTATCGAGTACCTACTC CTTTGTTCTGCATTCAGCAGCTATTTATTGAGTACCTACTC < 41bp 1 0.0336127017780713 1 0.0911678075790405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MEGF8 ENSG00000105429 UTR3 Human protein_coding chr19:42881092 chr19:42881100 . . 0 29 hm5C_associated_SNPs_13753 0 0 1 0 0 Endoplasmic reticulum 1 0.500234638222083 1 0.999530723555834 hm5C_site_15597 DeepMRMD:1;iRNA_m5C:0.999530723555834 15598 chr19 43906963 43906963 1 + T C rs34538722 43906976 + 43906956 43906996 41 GATCTCCTGACCTCGTGATCCGCCTGCCTTGGCCTCCCAAA GATCTCCCGACCTCGTGATCCGCCTGCCTTGGCCTCCCAAA < 41bp 1 0.457138547278277 1 0.143070042133331 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TEX101 ENSG00000131126 UTR5 Human protein_coding chr19:43906976 chr19:43906963 . . 0 8 hm5C_associated_SNPs_13754 0 0 0 0 2 unknown 1 0.500231647499949 1 0.999536705000103 hm5C_site_15598 DeepMRMD:1;iRNA_m5C:0.999536705000103 15599 chr19 44337696 44337696 1 + T C rs190134631 44337690 + 44337670 44337710 41 CTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCA CTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCA < 41bp 1 0.638815479226476 1 0.477903038263321 experiment 0.722369041547048 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337690 chr19:44337696 nonsynonymous SNV 0.001 1 27 hm5C_associated_SNPs_13756 0 0 0 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_15599 DeepMRMD:1;iRNA_m5C:0.999536712157815 15600 chr19 44337751 44337751 1 + T C rs182718468 44337749 + 44337729 44337769 41 GGGTTCACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTG GGGTTCACGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTG < 41bp 1 0.567257423382838 1 0.0545344054698944 experiment 0.865485153234325 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337749 chr19:44337751 nonsynonymous SNV 0.102 2 23 hm5C_associated_SNPs_13757 0 0 0 0 2 Nucleus 1 0.500231643927673 1 0.999536712144654 hm5C_site_15600 DeepMRMD:1;iRNA_m5C:0.999536712144654 15601 chr19 44337751 44337751 1 + T C rs182718468 44337750 + 44337730 44337770 41 GGTTCACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGG GGTTCACGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGG < 41bp 1 0.326812638486338 1 0.101423352956772 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337750 chr19:44337751 nonsynonymous SNV 0.102 2 22 hm5C_associated_SNPs_13758 0 0 0 0 2 Nucleus 1 0.500231643921197 1 0.999536712157606 hm5C_site_15601 DeepMRMD:1;iRNA_m5C:0.999536712157606 15602 chr19 44337751 44337751 1 + T C rs182718468 44337752 + 44337732 44337772 41 TTCACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGA TTCACGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGA < 41bp 1 0.417494900765773 1 0.346164733171463 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337752 chr19:44337751 nonsynonymous SNV 0.102 2 20 hm5C_associated_SNPs_13759 0 0 0 0 2 Nucleus 1 0.500231643941272 1 0.999536712117456 hm5C_site_15602 DeepMRMD:1;iRNA_m5C:0.999536712117456 15603 chr19 44337751 44337751 1 + T C rs182718468 44337755 + 44337735 44337775 41 ACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTA ACGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTA < 41bp 1 0.102332516593566 1 0.143629044294357 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337755 chr19:44337751 nonsynonymous SNV 0.102 2 17 hm5C_associated_SNPs_13760 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15603 DeepMRMD:1;iRNA_m5C:0.999536712157815 15604 chr19 44337751 44337751 1 + T C rs182718468 44337756 + 44337736 44337776 41 CGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAC CGCTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTAC < 41bp 1 0.508160649652174 1 0.702181100845337 experiment 0.983678700695653 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337756 chr19:44337751 nonsynonymous SNV 0.102 2 16 hm5C_associated_SNPs_13761 0 0 0 0 2 Nucleus 1 0.500231643925968 0.595637798309326 0.999536712148063 hm5C_site_15604 DeepMRMD:0.595637798309326;iRNA_m5C:0.999536712148063 15605 chr19 44337751 44337751 1 + T C rs182718468 44337758 + 44337738 44337778 41 CTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAG CTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTACAG < 41bp 1 0.498419467806579 1 0.457826256752014 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337758 chr19:44337751 nonsynonymous SNV 0.102 2 14 hm5C_associated_SNPs_13762 0 0 0 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_15605 DeepMRMD:1;iRNA_m5C:0.999536712157814 15606 chr19 44337751 44337751 1 + T C rs182718468 44337759 + 44337739 44337779 41 TATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGG TATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTACAGG < 41bp 1 0.580566189063289 1 0.31747430562973 experiment 0.838867621873423 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337759 chr19:44337751 nonsynonymous SNV 0.102 2 13 hm5C_associated_SNPs_13763 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15606 DeepMRMD:1;iRNA_m5C:0.999536712157815 15607 chr19 44342035 44342035 1 + T C rs77524195 44342047 + 44342027 44342067 41 GAGTAGAGTTATTAAAGGAACATGTACTAAGAAATTAGGCC GAGTAGAGCTATTAAAGGAACATGTACTAAGAAATTAGGCC < 41bp 1 0.109752196054511 1 0.295522093772888 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF283 ENSG00000167637 UTR3 Human protein_coding chr19:44342047 chr19:44342035 . . 0 9 hm5C_associated_SNPs_13764 0 0 1 0 0 Nucleus 1 0.500231643921133 1 0.999536712157734 hm5C_site_15607 DeepMRMD:1;iRNA_m5C:0.999536712157734 15608 chr19 44677774 44677774 1 + C T rs111332810 44677788 + 44677768 44677808 41 GCTGGGCGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGG GCTGGGTGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGG < 41bp 1 0.280857482913046 1 0.138159930706024 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF226 ENSG00000167380 UTR3 Human protein_coding chr19:44677788 chr19:44677774 . . 0 7 hm5C_associated_SNPs_13765 0 0 0 0 0 Cytosol 1 0.500231643951212 1 0.999536712097576 hm5C_site_15608 DeepMRMD:1;iRNA_m5C:0.999536712097576 15609 chr19 45389198 45389198 1 + G C rs1966960 45389205 + 45389185 45389225 41 ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCAA ACCCCACAGCCTGCAGGGACCTCCCTCCTACAAGCCACCAA < 41bp 1 0.360623343903622 1 0.0504463315010071 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389205 chr19:45389198 nonsynonymous SNV 0.748 4 14 hm5C_associated_SNPs_13768 0 0 1 0 2 Ribosome 1 0.500231643921121 1 0.999536712157758 hm5C_site_15609 DeepMRMD:1;iRNA_m5C:0.999536712157758 15610 chr19 45389208 45389208 1 + C T rs571919329 45389205 + 45389185 45389225 41 ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCAA ACCCCACAGCCTGGAGGGACCTCTCTCCTACAAGCCACCAA < 41bp 1 0.206023109055078 1 0.100558489561081 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389205 chr19:45389208 nonsynonymous SNV 0.760 3 24 hm5C_associated_SNPs_13769 0 0 0 0 2 Ribosome 1 0.500231643928128 1 0.999536712143744 hm5C_site_15610 DeepMRMD:1;iRNA_m5C:0.999536712143744 15611 chr19 45389224 45389224 1 + A G rs283814 45389205 + 45389185 45389225 41 ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCAA ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCGA < 41bp 1 0.380943611434486 1 0.0942977070808411 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389205 chr19:45389224 synonymous SNV . 0 40 hm5C_associated_SNPs_13770 0 1 0 0 2 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_15611 DeepMRMD:1;iRNA_m5C:0.999536712157814 15612 chr19 45405683 45405683 1 + C T rs191178282 45405702 + 45405682 45405722 41 TCGAACTCCTGGACTCAAGCCTTGGCCTCCCAAAGTGCTGG TTGAACTCCTGGACTCAAGCCTTGGCCTCCCAAAGTGCTGG < 41bp 1 0.237181523351387 1 0.253912389278412 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TOMM40 ENSG00000130204 UTR3 Human protein_coding chr19:45405702 chr19:45405683 . . 0 2 hm5C_associated_SNPs_13771 0 0 0 0 0 Cytosol 1 0.50023164392107 1 0.99953671215786 hm5C_site_15612 DeepMRMD:1;iRNA_m5C:0.99953671215786 15613 chr19 45434391 45434391 1 + A G rs180799001 45434387 + 45434367 45434407 41 GCGCCTGTACTGAGGACGCCCTCCATGTGTGTCCAATGTGG GCGCCTGTACTGAGGACGCCCTCCGTGTGTGTCCAATGTGG < 41bp 1 0.477302807864818 1 0.659836292266846 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control APOC1P1 ENSG00000214855 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:45434387 chr19:45434391 . . 0 25 hm5C_associated_SNPs_13772 0 0 0 0 0 unknown 1 0.500231643921334 0.680327415466308 0.999536712157331 hm5C_site_15613 DeepMRMD:0.680327415466308;iRNA_m5C:0.999536712157331 15614 chr19 45490636 45490636 1 + T C rs204468 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG CGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG < 41bp 1 0.682694792493523 1 0.795100688934326 experiment 0.634610415012954 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490636 synonymous SNV . 0 1 hm5C_associated_SNPs_13773 0 0 1 0 1 Cytosol 1 0.500231643922098 0.409798622131348 0.999536712155804 hm5C_site_15614 DeepMRMD:0.409798622131348;iRNA_m5C:0.999536712155804 15615 chr19 45490643 45490643 1 + T C rs143527825 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG TGATGAGCTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG < 41bp 1 0.657301353315198 1 0.724099576473236 experiment 0.685397293369604 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490643 synonymous SNV . 0 8 hm5C_associated_SNPs_13774 0 0 1 0 1 Cytosol 1 0.500231643927537 0.551800847053528 0.999536712144925 hm5C_site_15615 DeepMRMD:0.551800847053528;iRNA_m5C:0.999536712144925 15616 chr19 45493771 45493771 1 + C T rs144674984 45493756 + 45493736 45493776 41 GTCCTCCTCTACATCCTGGACAACGAGACCAACTTCGTGGT GTCCTCCTCTACATCCTGGACAACGAGACCAACTTTGTGGT < 41bp 1 0.404382346587916 1 0.0763591527938843 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493756 chr19:45493771 synonymous SNV . 0 36 hm5C_associated_SNPs_13775 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15616 DeepMRMD:1;iRNA_m5C:0.999536712157815 15617 chr19 45493771 45493771 1 + C T rs144674984 45493765 + 45493745 45493785 41 TACATCCTGGACAACGAGACCAACTTCGTGGTCCAGGTCAG TACATCCTGGACAACGAGACCAACTTTGTGGTCCAGGTCAG < 41bp 1 0.428507231471487 1 0.102841019630432 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493765 chr19:45493771 synonymous SNV . 0 27 hm5C_associated_SNPs_13776 0 0 1 0 1 Cytosol 1 0.500231643924383 1 0.999536712151235 hm5C_site_15617 DeepMRMD:1;iRNA_m5C:0.999536712151235 15618 chr19 45567717 45567717 1 + G C rs571145118 45567724 + 45567704 45567744 41 TACCGTTCCGGCCGCCACGCCCGCTCCCGGTCCCGCTCCTG TACCGTTCCGGCCCCCACGCCCGCTCCCGGTCCCGCTCCTG < 41bp 1 0.224775518297122 1 0.103388726711273 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLASRP ENSG00000104859 CDS Human protein_coding chr19:45567724 chr19:45567717 nonsynonymous SNV 0.232 1 14 hm5C_associated_SNPs_13777 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_15618 DeepMRMD:1;iRNA_m5C:0.999536712157815 15619 chr19 45648503 45648503 1 + A G rs10419874 45648504 + 45648484 45648524 41 GCCTGGACCTCGACCGTGAACCCAAGAAAGAGGCGGTGAGC GCCTGGACCTCGACCGTGAGCCCAAGAAAGAGGCGGTGAGC < 41bp 1 0.419277180325894 1 0.135405689477921 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R37 ENSG00000104866 CDS Human protein_coding chr19:45648504 chr19:45648503 synonymous SNV . 0 20 hm5C_associated_SNPs_13778 0 0 1 0 1 Ribosome 1 0.50023164392908 1 0.999536712141839 hm5C_site_15619 DeepMRMD:1;iRNA_m5C:0.999536712141839 15620 chr19 45650431 45650431 1 + T G rs544076550 45650439 + 45650419 45650459 41 GCACTACAGCCCTTTGGGGGCGAGTGGCATGGGTGTGGGTG GCACTACAGCCCGTTGGGGGCGAGTGGCATGGGTGTGGGTG < 41bp 1 0.544524509160364 1 0.67010509967804 experiment 0.910950981679272 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPP1R37 ENSG00000104866 UTR3 Human protein_coding chr19:45650439 chr19:45650431 . . 0 13 hm5C_associated_SNPs_13779 0 0 1 0 0 Ribosome 1 0.500231643921092 0.65978980064392 0.999536712157815 hm5C_site_15620 DeepMRMD:0.65978980064392;iRNA_m5C:0.999536712157815 15621 chr19 45650434 45650434 1 + G A rs189379410 45650439 + 45650419 45650459 41 GCACTACAGCCCTTTGGGGGCGAGTGGCATGGGTGTGGGTG GCACTACAGCCCTTTAGGGGCGAGTGGCATGGGTGTGGGTG < 41bp 1 0.480229304508293 1 0.526834845542908 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPP1R37 ENSG00000104866 UTR3 Human protein_coding chr19:45650439 chr19:45650434 . . 0 16 hm5C_associated_SNPs_13780 0 0 1 0 0 Ribosome 1 0.500231643921029 0.946330308914184 0.999536712157942 hm5C_site_15621 DeepMRMD:0.946330308914184;iRNA_m5C:0.999536712157942 15622 chr19 45762333 45762333 1 + C T rs570301106 45762352 + 45762332 45762372 41 TCGCCTCCTGTCCCGAGGAGCAGCCCCACGTGGGCAACTAC TTGCCTCCTGTCCCGAGGAGCAGCCCCACGTGGGCAACTAC < 41bp 1 0.189384719177796 1 0.606874942779541 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45762352 chr19:45762333 synonymous SNV . 0 2 hm5C_associated_SNPs_13781 0 0 1 0 1 Nucleus 1 0.500231643921094 0.786250114440918 0.999536712157813 hm5C_site_15622 DeepMRMD:0.786250114440918;iRNA_m5C:0.999536712157813 15623 chr19 45762360 45762360 1 + C T rs141868124 45762352 + 45762332 45762372 41 TCGCCTCCTGTCCCGAGGAGCAGCCCCACGTGGGCAACTAC TCGCCTCCTGTCCCGAGGAGCAGCCCCATGTGGGCAACTAC < 41bp 1 0.190356146016855 1 0.385731220245361 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45762352 chr19:45762360 synonymous SNV . 0 29 hm5C_associated_SNPs_13782 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15623 DeepMRMD:1;iRNA_m5C:0.999536712157815 15624 chr19 45912890 45912890 1 + C T rs189503912 45912884 - 45912864 45912904 41 TGTAATAATAAATCGTCCTCCCAGGCCAGGCTCCTGCTGGC TGTAATAATAAATCATCCTCCCAGGCCAGGCTCCTGCTGGC < 41bp 1 0.422564886759865 1 0.421060264110565 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD3EAP;ERCC1 ENSG00000012061;ENSG00000117877 UTR3 Human other chr19:45912884 chr19:45912890 . . 0 15 hm5C_associated_SNPs_13783 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15624 DeepMRMD:1;iRNA_m5C:0.999536712157815 15625 chr19 45912890 45912890 1 + C T rs189503912 45912885 - 45912865 45912905 41 GTGTAATAATAAATCGTCCTCCCAGGCCAGGCTCCTGCTGG GTGTAATAATAAATCATCCTCCCAGGCCAGGCTCCTGCTGG < 41bp 1 0.338185706299491 1 0.40761661529541 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD3EAP;ERCC1 ENSG00000012061;ENSG00000117877 UTR3 Human other chr19:45912885 chr19:45912890 . . 0 16 hm5C_associated_SNPs_13784 0 0 1 0 1 unknown 1 0.500231643884073 1 0.999536712231853 hm5C_site_15625 DeepMRMD:1;iRNA_m5C:0.999536712231853 15626 chr19 45912890 45912890 1 + C T rs189503912 45912887 - 45912867 45912907 41 CAGTGTAATAATAAATCGTCCTCCCAGGCCAGGCTCCTGCT CAGTGTAATAATAAATCATCCTCCCAGGCCAGGCTCCTGCT < 41bp 1 0.286712385509333 1 0.229839503765106 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD3EAP;ERCC1 ENSG00000012061;ENSG00000117877 UTR3 Human other chr19:45912887 chr19:45912890 . . 0 18 hm5C_associated_SNPs_13785 0 0 1 0 1 unknown 1 0.5002316462735 1 0.999536707453001 hm5C_site_15626 DeepMRMD:1;iRNA_m5C:0.999536707453001 15627 chr19 46003757 46003757 1 + T A rs200355710 46003772 + 46003752 46003792 41 ACAGTTTTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT ACAGTATTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT < 41bp 1 0.524986380277771 1 0.286480486392975 experiment 0.950027239444459 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003772 chr19:46003757 synonymous SNV . 0 6 hm5C_associated_SNPs_13786 0 0 0 0 2 nucleolus 1 0.500231643923168 1 0.999536712153665 hm5C_site_15627 DeepMRMD:1;iRNA_m5C:0.999536712153665 15628 chr19 46025469 46025469 1 + A C rs139701485 46025465 + 46025445 46025485 41 GAGCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCA GAGCACATAGAGCGCCGGGTCTCCCATGCAGGTGATGCTCA < 41bp 1 0.338828468060719 1 0.10065883398056 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025465 chr19:46025469 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_13787 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15628 DeepMRMD:1;iRNA_m5C:0.999536712157815 15629 chr19 46025469 46025469 1 + A C rs139701485 46025467 + 46025447 46025487 41 GCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGA GCACATAGAGCGCCGGGTCTCCCATGCAGGTGATGCTCAGA < 41bp 1 0.264647611222312 1 0.122413992881775 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025467 chr19:46025469 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_13788 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_15629 DeepMRMD:1;iRNA_m5C:0.999536712157816 15630 chr19 46025469 46025469 1 + A C rs139701485 46025468 + 46025448 46025488 41 CACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGAT CACATAGAGCGCCGGGTCTCCCATGCAGGTGATGCTCAGAT < 41bp 1 0.12707309797753 1 0.0874674320220947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025468 chr19:46025469 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_13789 0 0 1 0 2 Ribosome 1 0.500231682865018 1 0.999536634269965 hm5C_site_15630 DeepMRMD:1;iRNA_m5C:0.999536634269965 15631 chr19 46026006 46026006 1 + C T rs201980485 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCGAA < 41bp 1 0.44495930249059 1 0.257960617542267 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026006 nonsynonymous SNV 0.119 0 20 hm5C_associated_SNPs_13791 0 0 1 0 3 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_15631 DeepMRMD:1;iRNA_m5C:0.999536712157815 15632 chr19 46026006 46026006 1 + C T rs201980485 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCTCCAAAGCTGAGAGTGGTCGAAG < 41bp 1 0.507274157826451 1 0.498609215021133 experiment 0.985451684347098 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026006 nonsynonymous SNV 0.119 0 19 hm5C_associated_SNPs_13792 0 0 1 0 3 Ribosome 1 0.50023164392108 1 0.999536712157839 hm5C_site_15632 DeepMRMD:1;iRNA_m5C:0.999536712157839 15633 chr19 46196111 46196111 1 + C T rs369185766 46196120 + 46196100 46196140 41 GCGTTCTACACCATTTGGAGCGGCTGGCACCGCAGGACTGA GCGTTCTACACTATTTGGAGCGGCTGGCACCGCAGGACTGA < 41bp 1 0.46676434738307 1 0.179182380437851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46196120 chr19:46196111 synonymous SNV . 0 12 hm5C_associated_SNPs_13793 0 0 1 0 1 chromatin 1 0.500231643848471 1 0.999536712303057 hm5C_site_15633 DeepMRMD:1;iRNA_m5C:0.999536712303057 15634 chr19 46206866 46206866 1 + T C rs113574860 46206872 + 46206852 46206892 41 GCTGGGATTACAGGTGTGAGCCACCGCACCTGGCAAAATGC GCTGGGATTACAGGCGTGAGCCACCGCACCTGGCAAAATGC < 41bp 1 0.267274088068274 1 0.081674188375473 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control QPCTL ENSG00000011478 UTR3 Human protein_coding chr19:46206872 chr19:46206866 . . 0 15 hm5C_associated_SNPs_13794 0 0 1 0 0 chromatin 1 0.500231641632295 1 0.999536716735409 hm5C_site_15634 DeepMRMD:1;iRNA_m5C:0.999536716735409 15635 chr19 46206866 46206866 1 + T C rs113574860 46206873 + 46206853 46206893 41 CTGGGATTACAGGTGTGAGCCACCGCACCTGGCAAAATGCT CTGGGATTACAGGCGTGAGCCACCGCACCTGGCAAAATGCT < 41bp 1 0.438790159778889 1 0.648126363754272 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control QPCTL ENSG00000011478 UTR3 Human protein_coding chr19:46206873 chr19:46206866 . . 0 14 hm5C_associated_SNPs_13795 0 0 1 0 0 chromatin 1 0.500231650010038 0.703747272491456 0.999536699979924 hm5C_site_15635 DeepMRMD:0.703747272491456;iRNA_m5C:0.999536699979924 15636 chr19 46206866 46206866 1 + T C rs113574860 46206875 + 46206855 46206895 41 GGGATTACAGGTGTGAGCCACCGCACCTGGCAAAATGCTGT GGGATTACAGGCGTGAGCCACCGCACCTGGCAAAATGCTGT < 41bp 1 0.398236180018253 1 0.540502786636353 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient QPCTL ENSG00000011478 UTR3 Human protein_coding chr19:46206875 chr19:46206866 . . 0 12 hm5C_associated_SNPs_13796 0 0 1 0 0 chromatin 1 0.500231598717252 0.918994426727294 0.999536802565496 hm5C_site_15636 DeepMRMD:0.918994426727294;iRNA_m5C:0.999536802565496 15637 chr19 46206866 46206866 1 + T C rs113574860 46206876 + 46206856 46206896 41 GGATTACAGGTGTGAGCCACCGCACCTGGCAAAATGCTGTT GGATTACAGGCGTGAGCCACCGCACCTGGCAAAATGCTGTT < 41bp 1 0.374337934890024 1 0.556848227977753 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient QPCTL ENSG00000011478 UTR3 Human protein_coding chr19:46206876 chr19:46206866 . . 0 11 hm5C_associated_SNPs_13797 0 0 1 0 0 chromatin 1 0.500231643921093 0.886303544044494 0.999536712157815 hm5C_site_15637 DeepMRMD:0.886303544044494;iRNA_m5C:0.999536712157815 15638 chr19 46509917 46509917 1 + C T rs148543679 46509908 + 46509888 46509928 41 GGGCCGCCCAGGCTCCTTGGCCCCCAGGTCGGCCCAGCTCA GGGCCGCCCAGGCTCCTTGGCCCCCAGGTTGGCCCAGCTCA < 41bp 1 0.131490635332415 1 0.0289601683616638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509908 chr19:46509917 nonsynonymous SNV 0.704 3 30 hm5C_associated_SNPs_13798 0 0 0 0 1 chromatin 1 0.500231643921158 1 0.999536712157683 hm5C_site_15638 DeepMRMD:1;iRNA_m5C:0.999536712157683 15639 chr19 46509917 46509917 1 + C T rs148543679 46509909 + 46509889 46509929 41 GGCCGCCCAGGCTCCTTGGCCCCCAGGTCGGCCCAGCTCAA GGCCGCCCAGGCTCCTTGGCCCCCAGGTTGGCCCAGCTCAA < 41bp 1 0.540414469829544 1 0.153165489435196 experiment 0.919171060340913 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509909 chr19:46509917 nonsynonymous SNV 0.704 3 29 hm5C_associated_SNPs_13799 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15639 DeepMRMD:1;iRNA_m5C:0.999536712157815 15640 chr19 46509917 46509917 1 + C T rs148543679 46509910 + 46509890 46509930 41 GCCGCCCAGGCTCCTTGGCCCCCAGGTCGGCCCAGCTCAAC GCCGCCCAGGCTCCTTGGCCCCCAGGTTGGCCCAGCTCAAC < 41bp 1 0.359693174972819 1 0.0219467282295227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509910 chr19:46509917 nonsynonymous SNV 0.704 3 28 hm5C_associated_SNPs_13800 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15640 DeepMRMD:1;iRNA_m5C:0.999536712157815 15641 chr19 46509917 46509917 1 + C T rs148543679 46509911 + 46509891 46509931 41 CCGCCCAGGCTCCTTGGCCCCCAGGTCGGCCCAGCTCAACT CCGCCCAGGCTCCTTGGCCCCCAGGTTGGCCCAGCTCAACT < 41bp 1 0.525669168291059 1 0.300998628139496 experiment 0.948661663417883 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509911 chr19:46509917 nonsynonymous SNV 0.704 3 27 hm5C_associated_SNPs_13801 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15641 DeepMRMD:1;iRNA_m5C:0.999536712157815 15642 chr19 46519585 46519585 1 + C T rs181058843 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGTGCTCCGCTTCGACCCCACGGCCTTTGTGAA < 41bp 1 0.254538057366931 1 0.301425278186798 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519585 nonsynonymous SNV 0.153 0 11 hm5C_associated_SNPs_13803 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15642 DeepMRMD:1;iRNA_m5C:0.999536712157815 15643 chr19 46878989 46878989 1 + G A rs4239538 46878977 + 46878957 46878997 41 GGCGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT GGCGACGAGCACAAGCGCTCCGTGGTGGACTCACTGGACAT < 41bp 1 0.522250560055711 1 0.454613119363785 experiment 0.955498879888578 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46878977 chr19:46878989 synonymous SNV . 0 33 hm5C_associated_SNPs_13804 0 0 1 0 1 Ribosome 1 0.500231643921082 1 0.999536712157836 hm5C_site_15643 DeepMRMD:1;iRNA_m5C:0.999536712157836 15644 chr19 46891260 46891260 1 + C G rs12609390 46891265 + 46891245 46891285 41 GGCGAGTGGGCAGGGCTGTGCTTTGAGGGCTGACATTGGAC GGCGAGTGGGCAGGGGTGTGCTTTGAGGGCTGACATTGGAC < 41bp 1 0.0981815685963066 1 0.149314105510712 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PPP5C ENSG00000011485 intronic Human protein_coding chr19:46891265 chr19:46891260 . . 0 16 hm5C_associated_SNPs_13805 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15644 DeepMRMD:1;iRNA_m5C:0.999536712157815 15645 chr19 46893665 46893665 1 + G A rs141163309 46893660 + 46893640 46893680 41 CCAATCCCACCGGACCCAGGCCCTGGGCTAGGGGCAGAGCA CCAATCCCACCGGACCCAGGCCCTGAGCTAGGGGCAGAGCA < 41bp 1 0.18775467621504 1 0.0690129101276398 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PPP5C ENSG00000011485 UTR3 Human protein_coding chr19:46893660 chr19:46893665 . . 0 26 hm5C_associated_SNPs_13806 0 0 1 0 0 Ribosome 1 0.500231643921906 1 0.999536712156189 hm5C_site_15645 DeepMRMD:1;iRNA_m5C:0.999536712156189 15646 chr19 46893665 46893665 1 + G A rs141163309 46893683 + 46893663 46893703 41 TGGGCTAGGGGCAGAGCAGGCCCCGCCCCAGGGCAATGTTG TGAGCTAGGGGCAGAGCAGGCCCCGCCCCAGGGCAATGTTG < 41bp 1 0.355245956547304 1 0.122501373291016 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 UTR3 Human protein_coding chr19:46893683 chr19:46893665 . . 0 3 hm5C_associated_SNPs_13808 0 0 1 0 0 Ribosome 1 0.500231643921361 1 0.999536712157278 hm5C_site_15646 DeepMRMD:1;iRNA_m5C:0.999536712157278 15647 chr19 47111761 47111761 1 + G A rs34089805 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCAGAGTTCCTGACCATGATGGCCAGAAAGATGA < 41bp 1 0.0744979886142824 1 0.0297550857067108 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111761 synonymous SNV . 0 10 hm5C_associated_SNPs_13809 2 0 1 0 2 Ribosome 1 0.500231643920903 1 0.999536712158194 hm5C_site_15647 DeepMRMD:1;iRNA_m5C:0.999536712158194 Long QT syndrome 1 Long QT syndrome 1 15648 chr19 47112492 47112492 1 + C T rs370746699 47112482 + 47112462 47112502 41 CGCGCGCACTCTCTCTTCAACACTCCCCTGCGTACCCCGGT CGCGCGCACTCTCTCTTCAACACTCCCCTGTGTACCCCGGT < 41bp 1 0.0930823020370131 1 0.069995254278183 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CALM3 ENSG00000160014 UTR3 Human protein_coding chr19:47112482 chr19:47112492 . . 0 31 hm5C_associated_SNPs_13810 0 0 1 0 0 Ribosome 1 0.500231756075326 1 0.999536487849348 hm5C_site_15648 DeepMRMD:1;iRNA_m5C:0.999536487849348 15649 chr19 47112838 47112838 1 + C T rs3729764 47112835 + 47112815 47112855 41 TGCTGGGAGGGACAAGAGGCCCTCCCCCAGGCAGAAGAGCA TGCTGGGAGGGACAAGAGGCCCTTCCCCAGGCAGAAGAGCA < 41bp 1 0.0279251262728844 1 0.0789730548858643 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CALM3 ENSG00000269292 ncRNA_intronic Human antisense chr19:47112835 chr19:47112838 . . 0 24 hm5C_associated_SNPs_13811 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15649 DeepMRMD:1;iRNA_m5C:0.999536712157815 15650 chr19 47506841 47506841 1 + C T rs553539748 47506857 + 47506837 47506877 41 TCTGCATTGTCCCCGTCTTTCCCATCGCCTAGCGTTTGGGG TCTGTATTGTCCCCGTCTTTCCCATCGCCTAGCGTTTGGGG < 41bp 1 0.138766426238965 1 0.165836691856384 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP35 ENSG00000160007 UTR3 Human protein_coding chr19:47506857 chr19:47506841 . . 0 5 hm5C_associated_SNPs_13813 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15650 DeepMRMD:1;iRNA_m5C:0.999536712157815 15651 chr19 47506851 47506851 1 + G A rs76436557 47506857 + 47506837 47506877 41 TCTGCATTGTCCCCGTCTTTCCCATCGCCTAGCGTTTGGGG TCTGCATTGTCCCCATCTTTCCCATCGCCTAGCGTTTGGGG < 41bp 1 0.146032585787826 1 0.0995436310768127 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP35 ENSG00000160007 UTR3 Human protein_coding chr19:47506857 chr19:47506851 . . 0 15 hm5C_associated_SNPs_13814 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15651 DeepMRMD:1;iRNA_m5C:0.999536712157815 15652 chr19 47700611 47700611 1 + C T rs11083864 47700626 + 47700606 47700646 41 CCTGACCTGCTTCCTGAGGACTTTGTCAGGTTGGTGTCAGT CCTGATCTGCTTCCTGAGGACTTTGTCAGGTTGGTGTCAGT < 41bp 1 0.0773246146428844 1 0.0481594204902649 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SAE1 ENSG00000142230 CDS Human protein_coding chr19:47700626 chr19:47700611 synonymous SNV . 0 6 hm5C_associated_SNPs_13815 0 0 1 0 1 Ribosome 1 0.500226131796292 1 0.999547736407415 hm5C_site_15652 DeepMRMD:1;iRNA_m5C:0.999547736407415 15653 chr19 47700631 47700631 1 + T C rs77274475 47700626 + 47700606 47700646 41 CCTGACCTGCTTCCTGAGGACTTTGTCAGGTTGGTGTCAGT CCTGACCTGCTTCCTGAGGACTTTGCCAGGTTGGTGTCAGT < 41bp 1 0.057515304213242 1 0.0628405213356018 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SAE1 ENSG00000142230 CDS Human protein_coding chr19:47700626 chr19:47700631 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_13816 0 0 1 0 1 Ribosome 1 0.500231638479345 1 0.999536723041311 hm5C_site_15653 DeepMRMD:1;iRNA_m5C:0.999536723041311 15654 chr19 47763881 47763881 1 + A C rs551520953 47763890 + 47763870 47763910 41 GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGG GGTCTCCTGGGCCCCCTCGGCCCCCAGGGGCCAGCAAGGGG < 41bp 1 0.223686853008941 1 0.177614152431488 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763890 chr19:47763881 nonsynonymous SNV 0.994 0 12 hm5C_associated_SNPs_13817 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15654 DeepMRMD:1;iRNA_m5C:0.999536712157815 15655 chr19 47763881 47763881 1 + A C rs551520953 47763891 + 47763871 47763911 41 GTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGG GTCTCCTGGGCCCCCTCGGCCCCCAGGGGCCAGCAAGGGGG < 41bp 1 0.680869178136839 1 0.51929122209549 experiment 0.638261643726321 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763891 chr19:47763881 nonsynonymous SNV 0.994 0 11 hm5C_associated_SNPs_13818 0 0 1 0 1 chromatin 1 0.500231643921092 0.96141755580902 0.999536712157815 hm5C_site_15655 DeepMRMD:0.96141755580902;iRNA_m5C:0.999536712157815 15656 chr19 47763881 47763881 1 + A C rs551520953 47763892 + 47763872 47763912 41 TCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGG TCTCCTGGGCCCCCTCGGCCCCCAGGGGCCAGCAAGGGGGG < 41bp 1 0.40128295926522 1 0.237205773591995 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763892 chr19:47763881 nonsynonymous SNV 0.994 0 10 hm5C_associated_SNPs_13819 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15656 DeepMRMD:1;iRNA_m5C:0.999536712157815 15657 chr19 47763881 47763881 1 + A C rs551520953 47763893 + 47763873 47763913 41 CTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGC CTCCTGGGCCCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGC < 41bp 1 0.561103953530021 1 0.75317108631134 experiment 0.877792092939959 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763893 chr19:47763881 nonsynonymous SNV 0.994 0 9 hm5C_associated_SNPs_13820 0 0 1 0 1 chromatin 1 0.500231643921092 0.49365782737732 0.999536712157815 hm5C_site_15657 DeepMRMD:0.49365782737732;iRNA_m5C:0.999536712157815 15658 chr19 47763888 47763888 1 + G A rs201968066 47763890 + 47763870 47763910 41 GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGG GGTCTCCTGGGACCCCTCAGCCCCCAGGGGCCAGCAAGGGG < 41bp 1 0.249490451403397 1 0.330574929714203 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763890 chr19:47763888 nonsynonymous SNV 0.976 2 19 hm5C_associated_SNPs_13821 0 0 1 0 1 chromatin 1 0.50023164393105 1 0.999536712137901 hm5C_site_15658 DeepMRMD:1;iRNA_m5C:0.999536712137901 15659 chr19 47763888 47763888 1 + G A rs201968066 47763892 + 47763872 47763912 41 TCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGG TCTCCTGGGACCCCTCAGCCCCCAGGGGCCAGCAAGGGGGG < 41bp 1 0.407894712653187 1 0.525690078735352 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763892 chr19:47763888 nonsynonymous SNV 0.976 2 17 hm5C_associated_SNPs_13823 0 0 1 0 1 chromatin 1 0.500231643921318 0.948619842529296 0.999536712157363 hm5C_site_15659 DeepMRMD:0.948619842529296;iRNA_m5C:0.999536712157363 15660 chr19 47763888 47763888 1 + G A rs201968066 47763893 + 47763873 47763913 41 CTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGC CTCCTGGGACCCCTCAGCCCCCAGGGGCCAGCAAGGGGGGC < 41bp 1 0.532931374100649 1 0.733106791973114 experiment 0.934137251798702 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763893 chr19:47763888 nonsynonymous SNV 0.976 2 16 hm5C_associated_SNPs_13824 0 0 1 0 1 chromatin 1 0.500231643921092 0.533786416053772 0.999536712157815 hm5C_site_15660 DeepMRMD:0.533786416053772;iRNA_m5C:0.999536712157815 15661 chr19 47778477 47778477 1 + G A rs531690454 47778486 + 47778466 47778506 41 TGGGAGTCCCCGGCGGGCCGCGACCCCAGCTCCAGCTGCCG TGGGAGTCCCCAGCGGGCCGCGACCCCAGCTCCAGCTGCCG < 41bp 1 0.299499888087308 1 0.0466729700565338 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INAFM1 ENSG00000257704 CDS Human protein_coding chr19:47778486 chr19:47778477 nonsynonymous SNV 0.112 1 12 hm5C_associated_SNPs_13825 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15661 DeepMRMD:1;iRNA_m5C:0.999536712157815 15662 chr19 47876048 47876048 1 + C T rs562906654 47876028 + 47876008 47876048 41 CCATGTTCAGCCTGGTGGAGCCTGTGCTCACCATCGCAGCC CCATGTTCAGCCTGGTGGAGCCTGTGCTCACCATCGCAGCT < 41bp 1 0.0684701679539303 1 0.127856194972992 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX34 ENSG00000134815 CDS Human protein_coding chr19:47876028 chr19:47876048 synonymous SNV . 0 41 hm5C_associated_SNPs_13826 0 0 1 0 1 Ribosome 1 0.500231643922426 1 0.999536712155148 hm5C_site_15662 DeepMRMD:1;iRNA_m5C:0.999536712155148 15663 chr19 48184474 48184474 1 + C T rs3745762 48184471 + 48184451 48184491 41 AGAAGATCGTCCTGGGGCAGCCGCCCTCTGCCACCCCCACG AGAAGATCGTCCTGGGGCAGCCGTCCTCTGCCACCCCCACG < 41bp 1 0.0444537747418651 1 0.179270356893539 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICRA ENSG00000063169 CDS Human protein_coding chr19:48184471 chr19:48184474 nonsynonymous SNV 0.388 0 24 hm5C_associated_SNPs_13827 0 0 0 0 1 unknown 1 0.500231644140709 1 0.999536711718582 hm5C_site_15663 DeepMRMD:1;iRNA_m5C:0.999536711718582 15664 chr19 48205074 48205074 1 + C G rs560545496 48205060 + 48205040 48205080 41 CCACCACCGCCGCCCACGGGCCAGATGAACGGCACGGTGGA CCACCACCGCCGCCCACGGGCCAGATGAACGGCAGGGTGGA < 41bp 1 0.39883754278998 1 0.271148025989532 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BICRA ENSG00000063169 CDS Human protein_coding chr19:48205060 chr19:48205074 nonsynonymous SNV 0.316 3 35 hm5C_associated_SNPs_13828 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15664 DeepMRMD:1;iRNA_m5C:0.999536712157815 15665 chr19 48244694 48244694 1 + G A rs543620769 48244691 + 48244671 48244711 41 CAAGGGCTCCGCCGAGTGAGCCGGCCCCCCTCCCATGGCCC CAAGGGCTCCGCCGAGTGAGCCGACCCCCCTCCCATGGCCC < 41bp 1 0.168347375209498 1 0.167461812496185 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EHD2 ENSG00000024422 UTR3 Human protein_coding chr19:48244691 chr19:48244694 . . 0 24 hm5C_associated_SNPs_13829 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15665 DeepMRMD:1;iRNA_m5C:0.999536712157815 15666 chr19 48244846 48244846 1 + G A rs547635108 48244847 + 48244827 48244867 41 GCCAGACACCCCGGTGGAAGCATTTAGAGGGGACCACGGGA GCCAGACACCCCGGTGGAAACATTTAGAGGGGACCACGGGA < 41bp 1 0.303066633394676 1 0.34847491979599 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EHD2 ENSG00000024422 UTR3 Human protein_coding chr19:48244847 chr19:48244846 . . 0 20 hm5C_associated_SNPs_13830 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15666 DeepMRMD:1;iRNA_m5C:0.999536712157815 15667 chr19 48245580 48245580 1 + A C rs181582756 48245568 + 48245548 48245588 41 TTGATAGAATCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTG TTGATAGAATCTTGCTCTGTCGCCCAGGCTGGCGTGCAGTG < 41bp 1 0.398717457714915 1 0.209354162216187 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EHD2 ENSG00000024422 UTR3 Human protein_coding chr19:48245568 chr19:48245580 . . 0 33 hm5C_associated_SNPs_13831 0 0 0 0 0 Nucleus 1 0.500231621910381 1 0.999536756179238 hm5C_site_15667 DeepMRMD:1;iRNA_m5C:0.999536756179238 15668 chr19 48259064 48259064 1 + G A rs563493472 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAGCTCGGAGCTGACAGACTCACTCAGGACCCTGAAGGTGC < 41bp 1 0.212719097388243 1 0.0212992429733276 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259064 synonymous SNV . 0 22 hm5C_associated_SNPs_13834 0 0 1 0 2 unknown 1 0.500231643922659 1 0.999536712154682 hm5C_site_15668 DeepMRMD:1;iRNA_m5C:0.999536712154682 15669 chr19 48259147 48259147 1 + C G rs559576515 48259167 + 48259147 48259187 41 CCAGGGGCTATGGGCGACACCATGGCTGCCCCTGGGCTGGG GCAGGGGCTATGGGCGACACCATGGCTGCCCCTGGGCTGGG < 41bp 1 0.596183104382193 1 0.508589088916779 experiment 0.807633791235614 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SNORD23 ENSG00000221803 ncRNA_exonic Human snoRNA chr19:48259167 chr19:48259147 . . 0 1 hm5C_associated_SNPs_13835 0 0 1 0 0 unknown 1 0.500231643921112 0.982821822166442 0.999536712157776 hm5C_site_15669 DeepMRMD:0.982821822166442;iRNA_m5C:0.999536712157776 15670 chr19 48259200 48259200 1 + A G rs55813323 48259211 + 48259191 48259231 41 GTGGGGCCAATGCCCAGGGGCTGAGGGCACGGGATGCTGGG GTGGGGCCAGTGCCCAGGGGCTGAGGGCACGGGATGCTGGG < 41bp 1 0.340344396808744 1 0.443438917398453 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD23 ENSG00000221803 ncRNA_exonic Human snoRNA chr19:48259211 chr19:48259200 . . 0 10 hm5C_associated_SNPs_13836 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15670 DeepMRMD:1;iRNA_m5C:0.999536712157815 15671 chr19 48259200 48259200 1 + A G rs55813323 48259218 + 48259198 48259238 41 CAATGCCCAGGGGCTGAGGGCACGGGATGCTGGGATGAGAT CAGTGCCCAGGGGCTGAGGGCACGGGATGCTGGGATGAGAT < 41bp 1 0.445405470826456 1 0.422926604747772 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD23 ENSG00000221803 ncRNA_exonic Human snoRNA chr19:48259218 chr19:48259200 . . 0 3 hm5C_associated_SNPs_13837 0 0 1 0 0 unknown 1 0.500231643921108 1 0.999536712157783 hm5C_site_15671 DeepMRMD:1;iRNA_m5C:0.999536712157783 15672 chr19 48259206 48259206 1 + A G rs530473873 48259211 + 48259191 48259231 41 GTGGGGCCAATGCCCAGGGGCTGAGGGCACGGGATGCTGGG GTGGGGCCAATGCCCGGGGGCTGAGGGCACGGGATGCTGGG < 41bp 1 0.31960668291789 1 0.416885077953339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD23 ENSG00000221803 ncRNA_exonic Human snoRNA chr19:48259211 chr19:48259206 . . 0 16 hm5C_associated_SNPs_13838 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15672 DeepMRMD:1;iRNA_m5C:0.999536712157815 15673 chr19 48259206 48259206 1 + A G rs530473873 48259218 + 48259198 48259238 41 CAATGCCCAGGGGCTGAGGGCACGGGATGCTGGGATGAGAT CAATGCCCGGGGGCTGAGGGCACGGGATGCTGGGATGAGAT < 41bp 1 0.499055209210208 1 0.5120490193367 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD23 ENSG00000221803 ncRNA_exonic Human snoRNA chr19:48259218 chr19:48259206 . . 0 9 hm5C_associated_SNPs_13839 0 0 1 0 0 unknown 1 0.500231643921092 0.9759019613266 0.999536712157815 hm5C_site_15673 DeepMRMD:0.9759019613266;iRNA_m5C:0.999536712157815 15674 chr19 48259220 48259220 1 + C T rs8105677 48259211 + 48259191 48259231 41 GTGGGGCCAATGCCCAGGGGCTGAGGGCACGGGATGCTGGG GTGGGGCCAATGCCCAGGGGCTGAGGGCATGGGATGCTGGG < 41bp 1 0.265237073339913 1 0.353404939174652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 intronic Human protein_coding chr19:48259211 chr19:48259220 . . 0 30 hm5C_associated_SNPs_13840 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15674 DeepMRMD:1;iRNA_m5C:0.999536712157815 15675 chr19 48259220 48259220 1 + C T rs8105677 48259218 + 48259198 48259238 41 CAATGCCCAGGGGCTGAGGGCACGGGATGCTGGGATGAGAT CAATGCCCAGGGGCTGAGGGCATGGGATGCTGGGATGAGAT < 41bp 1 0.239801753729931 1 0.262952119112015 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 intronic Human protein_coding chr19:48259218 chr19:48259220 . . 0 23 hm5C_associated_SNPs_13841 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157811 hm5C_site_15675 DeepMRMD:1;iRNA_m5C:0.999536712157811 15676 chr19 48259787 48259787 1 + C G rs11538664 48259799 + 48259779 48259819 41 CTGTAGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAG CTGTAGCCGGAGGGCAACATCCTTCGAGACCGGTTCAAGAG < 41bp 1 0.0678419994875078 1 0.230099499225616 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259799 chr19:48259787 synonymous SNV . 0 9 hm5C_associated_SNPs_13842 0 0 1 0 2 unknown 1 0.500231643921494 1 0.999536712157012 hm5C_site_15676 DeepMRMD:1;iRNA_m5C:0.999536712157012 15677 chr19 48427149 48427149 1 + T A rs561730013 48427130 + 48427110 48427150 41 TTCGAGGCCAGCCTGGTCCACATGGGTCGGAAAAAAGGATT TTCGAGGCCAGCCTGGTCCACATGGGTCGGAAAAAAGGAAT < 41bp 1 0.411592630988436 1 0.175603985786438 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNAR-A10;SNAR-A11;SNAR-A14;SNAR-A3;SNAR-A4;SNAR-A5;SNAR-A6;SNAR-A7;SNAR-A8;SNAR-A9 ENSG00000221072;ENSG00000188334 intergenic Human other chr19:48427130 chr19:48427149 . . 0 40 hm5C_associated_SNPs_13844 0 0 0 0 0 unknown 1 0.50023162460514 1 0.999536750789721 hm5C_site_15677 DeepMRMD:1;iRNA_m5C:0.999536750789721 15678 chr19 48427149 48427149 1 + T A rs561730013 48427137 + 48427117 48427157 41 CCAGCCTGGTCCACATGGGTCGGAAAAAAGGATTTTTTTTA CCAGCCTGGTCCACATGGGTCGGAAAAAAGGAATTTTTTTA < 41bp 1 0.572105103944072 1 0.485792309045792 experiment 0.855789792111855 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNAR-A10;SNAR-A11;SNAR-A14;SNAR-A3;SNAR-A4;SNAR-A5;SNAR-A6;SNAR-A7;SNAR-A8;SNAR-A9 ENSG00000221072;ENSG00000188334 intergenic Human other chr19:48427137 chr19:48427149 . . 0 33 hm5C_associated_SNPs_13845 0 0 0 0 0 unknown 1 0.500231643921096 1 0.999536712157808 hm5C_site_15678 DeepMRMD:1;iRNA_m5C:0.999536712157808 15679 chr19 48427151 48427151 1 + T A rs530683932 48427137 + 48427117 48427157 41 CCAGCCTGGTCCACATGGGTCGGAAAAAAGGATTTTTTTTA CCAGCCTGGTCCACATGGGTCGGAAAAAAGGATTATTTTTA < 41bp 1 0.538195028866271 1 0.666018009185791 experiment 0.923609942267457 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNAR-A10;SNAR-A11;SNAR-A14;SNAR-A3;SNAR-A4;SNAR-A5;SNAR-A6;SNAR-A7;SNAR-A8;SNAR-A9 ENSG00000221072;ENSG00000188334 intergenic Human other chr19:48427137 chr19:48427151 . . 0 35 hm5C_associated_SNPs_13846 0 0 0 0 0 unknown 1 0.500231643921092 0.667963981628418 0.999536712157815 hm5C_site_15679 DeepMRMD:0.667963981628418;iRNA_m5C:0.999536712157815 15680 chr19 48685811 48685811 1 + G A rs565428109 48685809 + 48685789 48685829 41 GCCAGCTGACCCACTCACACCCGGCCTGCCCGCTGGAGTTC GCCAGCTGACCCACTCACACCCAGCCTGCCCGCTGGAGTTC < 41bp 1 0.350373709462044 1 0.105743288993835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C19orf68 ENSG00000185453 CDS Human protein_coding chr19:48685809 chr19:48685811 synonymous SNV . 0 23 hm5C_associated_SNPs_13847 0 0 0 0 1 Endoplasmic reticulum 1 0.500231884893636 1 0.999536230212728 hm5C_site_15680 DeepMRMD:1;iRNA_m5C:0.999536230212728 15681 chr19 48685811 48685811 1 + G A rs565428109 48685810 + 48685790 48685830 41 CCAGCTGACCCACTCACACCCGGCCTGCCCGCTGGAGTTCG CCAGCTGACCCACTCACACCCAGCCTGCCCGCTGGAGTTCG < 41bp 1 0.535020696343391 1 0.154535055160522 experiment 0.929958607313219 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control C19orf68 ENSG00000185453 CDS Human protein_coding chr19:48685810 chr19:48685811 synonymous SNV . 0 22 hm5C_associated_SNPs_13848 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921303 1 0.999536712157394 hm5C_site_15681 DeepMRMD:1;iRNA_m5C:0.999536712157394 15682 chr19 48832637 48832637 1 + G A rs535964111 48832653 + 48832633 48832673 41 TCATGGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTCATC TCATAGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTCATC < 41bp 1 0.476133587250931 1 0.0383817851543427 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48832653 chr19:48832637 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_13849 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_15682 DeepMRMD:1;iRNA_m5C:0.999536712157815 15683 chr19 48954421 48954421 1 + G A rs2302951 48954428 + 48954408 48954448 41 AGCTGGAGCCGCCGGGAGCCCTTCCTGCTCAGTGGCGGGGA AGCTGGAGCCGCCAGGAGCCCTTCCTGCTCAGTGGCGGGGA < 41bp 1 0.224060686669279 1 0.265490174293518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRWD1 ENSG00000105447 CDS Human protein_coding chr19:48954428 chr19:48954421 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_13850 0 0 1 0 1 Ribosome 1 0.500231643920481 1 0.999536712159039 hm5C_site_15683 DeepMRMD:1;iRNA_m5C:0.999536712159039 15684 chr19 48957062 48957062 1 + G A rs569432524 48957057 + 48957037 48957077 41 ATTTCTCCGTGTGGGGGCTACATGCGACCCTCTCCCCTCCT ATTTCTCCGTGTGGGGGCTACATGCAACCCTCTCCCCTCCT < 41bp 1 0.31506969498998 1 0.147711634635925 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRWD1 ENSG00000105447 UTR3 Human protein_coding chr19:48957057 chr19:48957062 . . 0 26 hm5C_associated_SNPs_13851 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15684 DeepMRMD:1;iRNA_m5C:0.999536712157815 15685 chr19 48959021 48959021 1 + C T rs184790733 48959028 + 48959008 48959048 41 CCCCCTGGCACTGCGGGGGCCTGGCCAGCTCATGGCGTTCC CCCCCTGGCACTGTGGGGGCCTGGCCAGCTCATGGCGTTCC < 41bp 1 0.58691912368801 1 0.0665988028049469 experiment 0.82616175262398 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNJ14 ENSG00000182324;ENSG00000105447 UTR5;UTR3 Human other chr19:48959028 chr19:48959021 . . 0 14 hm5C_associated_SNPs_13852 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15685 DeepMRMD:1;iRNA_m5C:0.999536712157815 15686 chr19 48972707 48972707 1 + G A rs546363096 48972687 + 48972667 48972707 41 GGGCGTTTGAGCGGGCTCACCCGAGCCCGCGGGCCAACGCG GGGCGTTTGAGCGGGCTCACCCGAGCCCGCGGGCCAACGCA < 41bp 1 0.688310048510558 1 0.703748345375061 experiment 0.623379902978884 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYTH2 ENSG00000268530 ncRNA_exonic Human antisense chr19:48972687 chr19:48972707 . . 0 41 hm5C_associated_SNPs_13854 0 0 1 0 1 Ribosome 1 0.500231643919581 0.592503309249878 0.999536712160838 hm5C_site_15686 DeepMRMD:0.592503309249878;iRNA_m5C:0.999536712160838 15687 chr19 49102399 49102399 1 + C T rs1132054 49102417 + 49102397 49102437 41 TGCGGCGACTGGAAGAACCACTTCACGGTGGCCCAGAGCGA TGTGGCGACTGGAAGAACCACTTCACGGTGGCCCAGAGCGA < 41bp 1 0.527441657152146 1 0.22454896569252 experiment 0.945116685695708 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49102417 chr19:49102399 synonymous SNV . 0 3 hm5C_associated_SNPs_13855 0 0 0 0 1 exosome 1 0.500231433426028 1 0.999537133147943 hm5C_site_15687 DeepMRMD:1;iRNA_m5C:0.999537133147943 15688 chr19 49468644 49468644 1 + C T rs11553228 49468653 + 49468633 49468673 41 TCTCTTCCAGCCTCCGACCGCCCTCCGATTTCCTCTCCGCT TCTCTTCCAGCTTCCGACCGCCCTCCGATTTCCTCTCCGCT < 41bp 1 0.0409399108863938 1 0.192855358123779 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FTL ENSG00000087086 UTR5 Human protein_coding chr19:49468653 chr19:49468644 . . 0 12 hm5C_associated_SNPs_13857 0 0 1 0 0 Cytosol 1 0.50023087741277 1 0.999538245174461 hm5C_site_15688 DeepMRMD:1;iRNA_m5C:0.999538245174461 15689 chr19 49469087 49469087 1 + T C rs2230267 49469074 + 49469054 49469094 41 GCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAATTGGCCGA GCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAACTGGCCGA < 41bp 1 0.44084256726328 1 0.0822116732597351 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469074 chr19:49469087 synonymous SNV . 0 34 hm5C_associated_SNPs_13858 5 0 1 0 2 Cytosol 1 0.500231643921201 1 0.999536712157598 hm5C_site_15689 DeepMRMD:1;iRNA_m5C:0.999536712157598 sporadic abdominal aortic aneurysm sporadic abdominal aortic aneurysm 15690 chr19 49470064 49470064 1 + T C rs536646625 49470063 + 49470043 49470083 41 GCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTT GCTTCTGCCTAAGCCTCTCCCCCCAGCCAATAGGCAGCTTT < 41bp 1 0.572414641133994 1 0.467041343450546 experiment 0.855170717732011 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 UTR3 Human protein_coding chr19:49470063 chr19:49470064 . . 0 22 hm5C_associated_SNPs_13860 0 0 1 9 0 Cytosol 1 0.5002317680437 1 0.9995364639126 hm5C_site_15690 DeepMRMD:1;iRNA_m5C:0.9995364639126 15691 chr19 49547356 49547356 1 + G A rs552368146 49547354 + 49547334 49547374 41 CCTTGTCTACCTCTTGCCCCCCGAAGGGTTAGTGTCGAGCT CCTTGTCTACCTCTTGCCCCCCAAAGGGTTAGTGTCGAGCT < 41bp 1 0.391023127660974 1 0.226240128278732 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CGB5 ENSG00000189052 UTR5 Human protein_coding chr19:49547354 chr19:49547356 . . 0 23 hm5C_associated_SNPs_13861 0 0 0 0 0 unknown 1 0.500231643921088 1 0.999536712157824 hm5C_site_15691 DeepMRMD:1;iRNA_m5C:0.999536712157824 15692 chr19 49611724 49611724 1 + G A rs377192222 49611707 + 49611687 49611727 41 CTGCGCCGGAGTGAAGAGGTCGTCCTCTCCATCTGCTGTGT CTGCGCCGGAGTGAAGAGGTCGTCCTCTCCATCTGCTATGT < 41bp 1 0.160377430857698 1 0.0247980058193207 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNRNP70 ENSG00000104852 UTR3 Human protein_coding chr19:49611707 chr19:49611724 . . 0 38 hm5C_associated_SNPs_13862 0 0 1 0 0 Nucleus 1 0.500231628673558 1 0.999536742652884 hm5C_site_15692 DeepMRMD:1;iRNA_m5C:0.999536742652884 15693 chr19 49611724 49611724 1 + G A rs377192222 49611710 + 49611690 49611730 41 CGCCGGAGTGAAGAGGTCGTCCTCTCCATCTGCTGTGTTTG CGCCGGAGTGAAGAGGTCGTCCTCTCCATCTGCTATGTTTG < 41bp 1 0.0489112506543927 1 0.0550951659679413 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNRNP70 ENSG00000104852 UTR3 Human protein_coding chr19:49611710 chr19:49611724 . . 0 35 hm5C_associated_SNPs_13863 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_15693 DeepMRMD:1;iRNA_m5C:0.999536712157814 15694 chr19 49967981 49967981 1 + T A rs11558188 49967998 + 49967978 49968018 41 TGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA TGTACCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA < 41bp 1 0.532538956432851 1 0.533115386962891 experiment 0.934922087134298 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967998 chr19:49967981 synonymous SNV . 0 4 hm5C_associated_SNPs_13865 0 0 1 0 2 Ribosome 1 0.500231643921092 0.933769226074218 0.999536712157815 hm5C_site_15694 DeepMRMD:0.933769226074218;iRNA_m5C:0.999536712157815 15695 chr19 49967996 49967996 1 + G A rs10421522 49967998 + 49967978 49968018 41 TGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA TGTTCCCTCAACCCTGCCAGCTGGGCCTGAAATAGGGCCCA < 41bp 1 0.619787959837226 1 0.629101276397705 experiment 0.760424080325547 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967998 chr19:49967996 synonymous SNV . 0 19 hm5C_associated_SNPs_13866 0 0 1 0 1 Ribosome 1 0.500231643921092 0.74179744720459 0.999536712157815 hm5C_site_15695 DeepMRMD:0.74179744720459;iRNA_m5C:0.999536712157815 15696 chr19 49967996 49967996 1 + G A rs10421522 49968003 + 49967983 49968023 41 CCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCAGGTGA CCTCAACCCTGCCAGCTGGGCCTGAAATAGGGCCCAGGTGA < 41bp 1 0.242568342009664 1 0.0903988182544708 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968003 chr19:49967996 synonymous SNV . 0 14 hm5C_associated_SNPs_13867 0 0 1 0 1 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_15696 DeepMRMD:1;iRNA_m5C:0.99953671215781 15697 chr19 49967996 49967996 1 + G A rs10421522 49968004 + 49967984 49968024 41 CTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCAGGTGAG CTCAACCCTGCCAGCTGGGCCTGAAATAGGGCCCAGGTGAG < 41bp 1 0.455515691612196 1 0.343752026557922 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968004 chr19:49967996 synonymous SNV . 0 13 hm5C_associated_SNPs_13868 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15697 DeepMRMD:1;iRNA_m5C:0.999536712157815 15698 chr19 49967996 49967996 1 + G A rs10421522 49968015 + 49967995 49968035 41 CGGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGC CAGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGC < 41bp 1 0.183093162617894 1 0.233989059925079 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968015 chr19:49967996 synonymous SNV . 0 2 hm5C_associated_SNPs_13869 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15698 DeepMRMD:1;iRNA_m5C:0.999536712157815 15699 chr19 49967996 49967996 1 + G A rs10421522 49968016 + 49967996 49968036 41 GGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCC AGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCC < 41bp 1 0.246778840208469 1 0.467673629522324 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968016 chr19:49967996 synonymous SNV . 0 1 hm5C_associated_SNPs_13870 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15699 DeepMRMD:1;iRNA_m5C:0.999536712157815 15700 chr19 49968002 49968002 1 + G A rs141388688 49967998 + 49967978 49968018 41 TGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA TGTTCCCTCAACCCTGCCGGCTGGACCTGAAATAGGGCCCA < 41bp 1 0.663823487254806 1 0.735500633716583 experiment 0.672353025490387 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967998 chr19:49968002 synonymous SNV . 0 25 hm5C_associated_SNPs_13871 0 0 1 0 1 Ribosome 1 0.500231643921092 0.528998732566834 0.999536712157815 hm5C_site_15700 DeepMRMD:0.528998732566834;iRNA_m5C:0.999536712157815 15701 chr19 49968002 49968002 1 + G A rs141388688 49968003 + 49967983 49968023 41 CCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCAGGTGA CCTCAACCCTGCCGGCTGGACCTGAAATAGGGCCCAGGTGA < 41bp 1 0.326437171541926 1 0.065927267074585 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968003 chr19:49968002 synonymous SNV . 0 20 hm5C_associated_SNPs_13872 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15701 DeepMRMD:1;iRNA_m5C:0.999536712157815 15702 chr19 49968002 49968002 1 + G A rs141388688 49968004 + 49967984 49968024 41 CTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCAGGTGAG CTCAACCCTGCCGGCTGGACCTGAAATAGGGCCCAGGTGAG < 41bp 1 0.609863911616447 1 0.30119264125824 experiment 0.780272176767106 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968004 chr19:49968002 synonymous SNV . 0 19 hm5C_associated_SNPs_13873 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15702 DeepMRMD:1;iRNA_m5C:0.999536712157815 15703 chr19 49968002 49968002 1 + G A rs141388688 49968015 + 49967995 49968035 41 CGGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGC CGGCTGGACCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGC < 41bp 1 0.182306565051793 1 0.198590308427811 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968015 chr19:49968002 synonymous SNV . 0 8 hm5C_associated_SNPs_13874 0 0 1 0 1 Ribosome 1 0.500231644393945 1 0.99953671121211 hm5C_site_15703 DeepMRMD:1;iRNA_m5C:0.99953671121211 15704 chr19 49968002 49968002 1 + G A rs141388688 49968016 + 49967996 49968036 41 GGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCC GGCTGGACCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCC < 41bp 1 0.272424313902401 1 0.426885902881622 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968016 chr19:49968002 synonymous SNV . 0 7 hm5C_associated_SNPs_13875 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15704 DeepMRMD:1;iRNA_m5C:0.999536712157815 15705 chr19 49968002 49968002 1 + G A rs141388688 49968017 + 49967997 49968037 41 GCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCCA GCTGGACCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCCA < 41bp 1 0.679553503221047 1 0.837146401405334 experiment 0.640892993557906 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968017 chr19:49968002 synonymous SNV . 0 6 hm5C_associated_SNPs_13876 0 0 1 0 1 Ribosome 1 0.500231644012329 0.325707197189332 0.999536711975342 hm5C_site_15705 DeepMRMD:0.325707197189332;iRNA_m5C:0.999536711975342 15706 chr19 49973615 49973615 1 + C T rs539672490 49973605 + 49973585 49973625 41 CCTCGGCAGGAAACCTCAAACCGGTGTGGGCGAGCAGGGGC CCTCGGCAGGAAACCTCAAACCGGTGTGGGTGAGCAGGGGC < 41bp 1 0.656548595229538 1 0.561713099479675 experiment 0.686902809540923 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49973605 chr19:49973615 nonsynonymous SNV 0.061 0 31 hm5C_associated_SNPs_13877 0 0 1 0 0 Ribosome 1 0.500231643903495 0.87657380104065 0.999536712193011 hm5C_site_15706 DeepMRMD:0.87657380104065;iRNA_m5C:0.999536712193011 15707 chr19 49990843 49990843 1 + A G rs2271951 49990853 + 49990833 49990873 41 AGGGATAAGAAACCCTGCGACAAAACCTCCTCCTTTTCCAA AGGGATAAGAGACCCTGCGACAAAACCTCCTCCTTTTCCAA < 41bp 1 0.556377632798507 1 0.350229918956757 experiment 0.887244734402985 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RPL13A ENSG00000273189 ncRNA_exonic Human processed_transcript chr19:49990853 chr19:49990843 . . 0 11 hm5C_associated_SNPs_13878 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15707 DeepMRMD:1;iRNA_m5C:0.999536712157815 15708 chr19 49990843 49990843 1 + A G rs2271951 49990861 + 49990841 49990881 41 GAAACCCTGCGACAAAACCTCCTCCTTTTCCAAGCGGCTGC GAGACCCTGCGACAAAACCTCCTCCTTTTCCAAGCGGCTGC < 41bp 1 0.213777608755399 1 0.0832512676715851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL13A ENSG00000273189 ncRNA_exonic Human processed_transcript chr19:49990861 chr19:49990843 . . 0 3 hm5C_associated_SNPs_13879 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15708 DeepMRMD:1;iRNA_m5C:0.999536712157815 15709 chr19 49990843 49990843 1 + A G rs2271951 49990862 + 49990842 49990882 41 AAACCCTGCGACAAAACCTCCTCCTTTTCCAAGCGGCTGCC AGACCCTGCGACAAAACCTCCTCCTTTTCCAAGCGGCTGCC < 41bp 1 0.446952330254882 1 0.0997992157936096 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL13A ENSG00000273189 ncRNA_exonic Human processed_transcript chr19:49990862 chr19:49990843 . . 0 2 hm5C_associated_SNPs_13880 0 0 0 0 1 Cytosol 1 0.500231643919982 1 0.999536712160036 hm5C_site_15709 DeepMRMD:1;iRNA_m5C:0.999536712160036 15710 chr19 49993254 49993254 1 + C G rs141468307 49993240 + 49993220 49993260 41 TGGAGGTCAGTGATGAGCAACATTCACCATCTTTCGTTTGA TGGAGGTCAGTGATGAGCAACATTCACCATCTTTGGTTTGA < 41bp 1 0.0230534864380949 1 0.036264181137085 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993240 chr19:49993254 . . 0 35 hm5C_associated_SNPs_13882 0 0 1 1 0 unknown 1 0.500285512113964 1 0.999428975772072 hm5C_site_15710 DeepMRMD:1;iRNA_m5C:0.999428975772072 15711 chr19 49993254 49993254 1 + C G rs141468307 49993246 + 49993226 49993266 41 TCAGTGATGAGCAACATTCACCATCTTTCGTTTGAGTCTCA TCAGTGATGAGCAACATTCACCATCTTTGGTTTGAGTCTCA < 41bp 1 0.0705397614962717 1 0.278565526008606 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993246 chr19:49993254 . . 0 29 hm5C_associated_SNPs_13884 0 0 1 1 0 unknown 1 0.500274814439065 1 0.999450371121871 hm5C_site_15711 DeepMRMD:1;iRNA_m5C:0.999450371121871 15712 chr19 49993254 49993254 1 + C G rs141468307 49993247 + 49993227 49993267 41 CAGTGATGAGCAACATTCACCATCTTTCGTTTGAGTCTCAC CAGTGATGAGCAACATTCACCATCTTTGGTTTGAGTCTCAC < 41bp 1 0.120944631106931 1 0.242182284593582 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993247 chr19:49993254 . . 0 28 hm5C_associated_SNPs_13885 0 0 1 1 0 unknown 1 0.500237967642742 1 0.999524064714516 hm5C_site_15712 DeepMRMD:1;iRNA_m5C:0.999524064714516 15713 chr19 49993254 49993254 1 + C G rs141468307 49993250 + 49993230 49993270 41 TGATGAGCAACATTCACCATCTTTCGTTTGAGTCTCACGGC TGATGAGCAACATTCACCATCTTTGGTTTGAGTCTCACGGC < 41bp 1 0.180790513525124 1 0.0742266178131104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993250 chr19:49993254 . . 0 25 hm5C_associated_SNPs_13886 0 0 1 1 0 unknown 1 0.50023164392903 1 0.999536712141941 hm5C_site_15713 DeepMRMD:1;iRNA_m5C:0.999536712141941 15714 chr19 49993254 49993254 1 + C G rs141468307 49993267 + 49993247 49993287 41 CATCTTTCGTTTGAGTCTCACGGCCATGAGATCAACCCCAT CATCTTTGGTTTGAGTCTCACGGCCATGAGATCAACCCCAT < 41bp 1 0.494894891195119 1 0.868574500083923 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993267 chr19:49993254 . . 0 8 hm5C_associated_SNPs_13887 0 0 1 1 0 unknown 1 0.500231764198237 0.262850999832154 0.999536471603525 hm5C_site_15714 DeepMRMD:0.262850999832154;iRNA_m5C:0.999536471603525 15715 chr19 49994439 49994439 1 + G T rs368173441 49994434 + 49994414 49994454 41 CCTGGGGACCTGGAGCCTGGCAGATGATGTCCTTATCTCAC CCTGGGGACCTGGAGCCTGGCAGATTATGTCCTTATCTCAC < 41bp 1 0.34263218930684 1 0.168412834405899 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD35A ENSG00000200259 ncRNA_exonic Human snoRNA chr19:49994434 chr19:49994439 . . 0 26 hm5C_associated_SNPs_13889 0 0 1 0 0 unknown 1 0.500231646137383 1 0.999536707725233 hm5C_site_15715 DeepMRMD:1;iRNA_m5C:0.999536707725233 15716 chr19 49994470 49994470 1 + T A rs59192944 49994464 + 49994444 49994484 41 CCTTATCTCACGATGGTCTGCGGATGTCCCTGTGGGAATGG CCTTATCTCACGATGGTCTGCGGATGACCCTGTGGGAATGG < 41bp 1 0.355932468637656 1 0.205608069896698 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD35A ENSG00000200259 ncRNA_exonic Human snoRNA chr19:49994464 chr19:49994470 . . 0 27 hm5C_associated_SNPs_13890 0 0 1 0 0 unknown 1 0.500231644324507 1 0.999536711350986 hm5C_site_15716 DeepMRMD:1;iRNA_m5C:0.999536711350986 15717 chr19 49994470 49994470 1 + T A rs59192944 49994471 + 49994451 49994491 41 TCACGATGGTCTGCGGATGTCCCTGTGGGAATGGCGACAAT TCACGATGGTCTGCGGATGACCCTGTGGGAATGGCGACAAT < 41bp 1 0.220088038454619 1 0.265103548765182 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD35A ENSG00000200259 ncRNA_exonic Human snoRNA chr19:49994471 chr19:49994470 . . 0 20 hm5C_associated_SNPs_13891 0 0 1 0 0 unknown 1 0.500231551685086 1 0.999536896629827 hm5C_site_15717 DeepMRMD:1;iRNA_m5C:0.999536896629827 15718 chr19 49994470 49994470 1 + T A rs59192944 49994473 + 49994453 49994493 41 ACGATGGTCTGCGGATGTCCCTGTGGGAATGGCGACAATGC ACGATGGTCTGCGGATGACCCTGTGGGAATGGCGACAATGC < 41bp 1 0.463379965743619 1 0.290252208709717 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD35A ENSG00000200259 ncRNA_exonic Human snoRNA chr19:49994473 chr19:49994470 . . 0 18 hm5C_associated_SNPs_13892 0 0 1 0 0 unknown 1 0.500216585771674 1 0.999566828456653 hm5C_site_15718 DeepMRMD:1;iRNA_m5C:0.999566828456653 15719 chr19 49994470 49994470 1 + T A rs59192944 49994485 + 49994465 49994505 41 GGATGTCCCTGTGGGAATGGCGACAATGCCAATGGCTTAGC GGATGACCCTGTGGGAATGGCGACAATGCCAATGGCTTAGC < 41bp 1 0.662699195955565 1 0.258511334657669 experiment 0.67460160808887 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD35A ENSG00000200259 ncRNA_exonic Human snoRNA chr19:49994485 chr19:49994470 . . 0 6 hm5C_associated_SNPs_13893 0 0 1 0 0 unknown 1 0.500231643939563 1 0.999536712120874 hm5C_site_15719 DeepMRMD:1;iRNA_m5C:0.999536712120874 15720 chr19 49994476 49994476 1 + T C rs56974957 49994464 + 49994444 49994484 41 CCTTATCTCACGATGGTCTGCGGATGTCCCTGTGGGAATGG CCTTATCTCACGATGGTCTGCGGATGTCCCTGCGGGAATGG < 41bp 1 0.390777598792718 1 0.137813657522202 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD35A ENSG00000200259 ncRNA_exonic Human snoRNA chr19:49994464 chr19:49994476 . . 0 33 hm5C_associated_SNPs_13894 0 0 1 0 0 unknown 1 0.500231643924317 1 0.999536712151366 hm5C_site_15720 DeepMRMD:1;iRNA_m5C:0.999536712151366 15721 chr19 49994476 49994476 1 + T C rs56974957 49994471 + 49994451 49994491 41 TCACGATGGTCTGCGGATGTCCCTGTGGGAATGGCGACAAT TCACGATGGTCTGCGGATGTCCCTGCGGGAATGGCGACAAT < 41bp 1 0.204093753772996 1 0.213362872600555 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD35A ENSG00000200259 ncRNA_exonic Human snoRNA chr19:49994471 chr19:49994476 . . 0 26 hm5C_associated_SNPs_13895 0 0 1 0 0 unknown 1 0.500231714579939 1 0.999536570840123 hm5C_site_15721 DeepMRMD:1;iRNA_m5C:0.999536570840123 15722 chr19 49994476 49994476 1 + T C rs56974957 49994473 + 49994453 49994493 41 ACGATGGTCTGCGGATGTCCCTGTGGGAATGGCGACAATGC ACGATGGTCTGCGGATGTCCCTGCGGGAATGGCGACAATGC < 41bp 1 0.671787018000633 1 0.451991021633148 experiment 0.656425963998734 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD35A ENSG00000200259 ncRNA_exonic Human snoRNA chr19:49994473 chr19:49994476 . . 0 24 hm5C_associated_SNPs_13896 0 0 1 0 0 unknown 1 0.5002218774203 1 0.999556245159401 hm5C_site_15722 DeepMRMD:1;iRNA_m5C:0.999556245159401 15723 chr19 49994476 49994476 1 + T C rs56974957 49994485 + 49994465 49994505 41 GGATGTCCCTGTGGGAATGGCGACAATGCCAATGGCTTAGC GGATGTCCCTGCGGGAATGGCGACAATGCCAATGGCTTAGC < 41bp 1 0.676930244158952 1 0.320696026086807 experiment 0.646139511682097 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD35A ENSG00000200259 ncRNA_exonic Human snoRNA chr19:49994485 chr19:49994476 . . 0 12 hm5C_associated_SNPs_13897 0 0 1 0 0 unknown 1 0.500231644695966 1 0.999536710608069 hm5C_site_15723 DeepMRMD:1;iRNA_m5C:0.999536710608069 15724 chr19 49994476 49994476 1 + T C rs56974957 49994493 + 49994473 49994513 41 CTGTGGGAATGGCGACAATGCCAATGGCTTAGCTGATGCCA CTGCGGGAATGGCGACAATGCCAATGGCTTAGCTGATGCCA < 41bp 1 0.154594745534703 1 0.211076468229294 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD35A ENSG00000200259 ncRNA_exonic Human snoRNA chr19:49994493 chr19:49994476 . . 0 4 hm5C_associated_SNPs_13898 0 0 1 0 0 unknown 1 0.500231640950082 1 0.999536718099835 hm5C_site_15724 DeepMRMD:1;iRNA_m5C:0.999536718099835 15725 chr19 49994476 49994476 1 + T C rs56974957 49994494 + 49994474 49994514 41 TGTGGGAATGGCGACAATGCCAATGGCTTAGCTGATGCCAG TGCGGGAATGGCGACAATGCCAATGGCTTAGCTGATGCCAG < 41bp 1 0.358065726690849 1 0.640757262706757 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD35A ENSG00000200259 ncRNA_exonic Human snoRNA chr19:49994494 chr19:49994476 . . 0 3 hm5C_associated_SNPs_13899 0 0 1 0 0 unknown 1 0.500231644655499 0.718485474586486 0.999536710689003 hm5C_site_15725 DeepMRMD:0.718485474586486;iRNA_m5C:0.999536710689003 15726 chr19 49995120 49995120 1 + A G rs116432725 49995110 + 49995090 49995130 41 AATTCCTCATGCGTTGCCTGCCCTTCCTCCATTGTTGCCCT AATTCCTCATGCGTTGCCTGCCCTTCCTCCGTTGTTGCCCT < 41bp 1 0.0730109042856586 1 0.0557745397090912 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995110 chr19:49995120 . . 0 31 hm5C_associated_SNPs_13900 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15726 DeepMRMD:1;iRNA_m5C:0.999536712157815 15727 chr19 49995120 49995120 1 + A G rs116432725 49995112 + 49995092 49995132 41 TTCCTCATGCGTTGCCTGCCCTTCCTCCATTGTTGCCCTGG TTCCTCATGCGTTGCCTGCCCTTCCTCCGTTGTTGCCCTGG < 41bp 1 0.204673254000176 1 0.0401736795902252 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995112 chr19:49995120 . . 0 29 hm5C_associated_SNPs_13901 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15727 DeepMRMD:1;iRNA_m5C:0.999536712157815 15728 chr19 49995420 49995420 1 + T C rs537341906 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACCTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.409493001178776 1 0.147377192974091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995420 . . 0 5 hm5C_associated_SNPs_13903 0 0 1 12 0 Cytosol 1 0.500231645644572 1 0.999536708710856 hm5C_site_15728 DeepMRMD:1;iRNA_m5C:0.999536708710856 15729 chr19 49995430 49995430 1 + C A rs8113219 49995436 + 49995416 49995456 41 GCACTTGGGGACAGCATGAGCTTGCTGTTGTACACAGGGTA GCACTTGGGGACAGAATGAGCTTGCTGTTGTACACAGGGTA < 41bp 1 0.402202969261615 1 0.118008345365524 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995436 chr19:49995430 . . 0 15 hm5C_associated_SNPs_13905 0 0 1 0 0 Cytosol 1 0.500231653300301 1 0.999536693399398 hm5C_site_15729 DeepMRMD:1;iRNA_m5C:0.999536693399398 15730 chr19 49995430 49995430 1 + C A rs8113219 49995448 + 49995428 49995468 41 AGCATGAGCTTGCTGTTGTACACAGGGTATTTCTAGAAGCA AGAATGAGCTTGCTGTTGTACACAGGGTATTTCTAGAAGCA < 41bp 1 0.601757012667605 1 0.155122488737106 experiment 0.79648597466479 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995448 chr19:49995430 . . 0 3 hm5C_associated_SNPs_13906 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_15730 DeepMRMD:1;iRNA_m5C:0.999536712157813 15731 chr19 49995512 49995512 1 + G A rs11539144 49995511 + 49995491 49995531 41 AACCAAGGGGTTACAGGCATCGCCCATGCTCCTCACCTGTA AACCAAGGGGTTACAGGCATCACCCATGCTCCTCACCTGTA < 41bp 1 0.584904170111133 1 0.151925593614578 experiment 0.830191659777733 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995511 chr19:49995512 . . 0 22 hm5C_associated_SNPs_13907 0 0 1 1 0 Cytosol 1 0.500231643518692 1 0.999536712962616 hm5C_site_15731 DeepMRMD:1;iRNA_m5C:0.999536712962616 15732 chr19 49995522 49995522 1 + C T rs3203517 49995511 + 49995491 49995531 41 AACCAAGGGGTTACAGGCATCGCCCATGCTCCTCACCTGTA AACCAAGGGGTTACAGGCATCGCCCATGCTCTTCACCTGTA < 41bp 1 0.63487233433728 1 0.351213574409485 experiment 0.730255331325439 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL13A ENSG00000142541 UTR3 Human protein_coding chr19:49995511 chr19:49995522 . . 0 32 hm5C_associated_SNPs_13908 0 0 1 1 0 Cytosol 1 0.500231643764852 1 0.999536712470296 hm5C_site_15732 DeepMRMD:1;iRNA_m5C:0.999536712470296 15733 chr19 50099257 50099257 1 + C T rs199894425 50099242 + 50099222 50099262 41 CATGGGGGTGGCTGGGGACCCAGCTCCCTGGGAGGCGGCGG CATGGGGGTGGCTGGGGACCCAGCTCCCTGGGAGGTGGCGG < 41bp 1 0.580881404781078 1 0.614426672458649 experiment 0.838237190437843 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRR12 ENSG00000126464 CDS Human protein_coding chr19:50099242 chr19:50099257 synonymous SNV . 0 36 hm5C_associated_SNPs_13909 0 0 1 0 0 Exosome 1 0.500231643921092 0.771146655082702 0.999536712157815 hm5C_site_15733 DeepMRMD:0.771146655082702;iRNA_m5C:0.999536712157815 15734 chr19 50105004 50105004 1 + T C rs111398914 50104991 + 50104971 50105011 41 GGCTGCTCCTCCTGAGGAGCCCGCCGCCCCGTCTCCCGAAG GGCTGCTCCTCCTGAGGAGCCCGCCGCCCCGTCCCCCGAAG < 41bp 1 0.21747987729453 1 0.533077478408813 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRR12 ENSG00000126464 CDS Human protein_coding chr19:50104991 chr19:50105004 synonymous SNV . 0 34 hm5C_associated_SNPs_13910 0 0 0 0 0 Exosome 1 0.500231643921092 0.933845043182374 0.999536712157815 hm5C_site_15734 DeepMRMD:0.933845043182374;iRNA_m5C:0.999536712157815 15735 chr19 50192822 50192822 1 + G A rs189326953 50192806 + 50192786 50192826 41 ACGCTTTGAAGGGGGCGAGTCTCCACAGACCTCCTAGGGGG ACGCTTTGAAGGGGGCGAGTCTCCACAGACCTCCTAAGGGG < 41bp 1 0.60131296482743 1 0.957873940467834 experiment 0.79737407034514 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADM5 ENSG00000268677 ncRNA_intronic Human antisense chr19:50192806 chr19:50192822 . . 0 37 hm5C_associated_SNPs_13913 0 0 1 0 0 nucleus 1 0.500231643921007 0.0842521190643319 0.999536712157987 hm5C_site_15735 DeepMRMD:0.0842521190643319;iRNA_m5C:0.999536712157987 15736 chr19 50307691 50307691 1 + G A rs149979892 50307680 + 50307660 50307700 41 TGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGA TGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGA < 41bp 1 0.151847322232691 1 0.74339759349823 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP2A1 ENSG00000196961 intronic Human protein_coding chr19:50307680 chr19:50307691 . . 0 32 hm5C_associated_SNPs_13914 0 0 0 0 0 Ribosome 1 0.5002315626331 0.51320481300354 0.999536874733799 hm5C_site_15736 DeepMRMD:0.51320481300354;iRNA_m5C:0.999536874733799 15737 chr19 50307691 50307691 1 + G A rs149979892 50307681 + 50307661 50307701 41 GGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG GGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAG < 41bp 1 0.116269542113189 1 0.493185669183731 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP2A1 ENSG00000196961 intronic Human protein_coding chr19:50307681 chr19:50307691 . . 0 31 hm5C_associated_SNPs_13915 0 0 0 0 0 Ribosome 1 0.500232047146898 1 0.999535905706203 hm5C_site_15737 DeepMRMD:1;iRNA_m5C:0.999535905706203 15738 chr19 50307691 50307691 1 + G A rs149979892 50307682 + 50307662 50307702 41 GTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGG GTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGG < 41bp 1 0.17378193662167 1 0.816694736480713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP2A1 ENSG00000196961 intronic Human protein_coding chr19:50307682 chr19:50307691 . . 0 30 hm5C_associated_SNPs_13916 0 0 0 0 0 Ribosome 1 0.500231643921092 0.366610527038574 0.999536712157815 hm5C_site_15738 DeepMRMD:0.366610527038574;iRNA_m5C:0.999536712157815 15739 chr19 50307691 50307691 1 + G A rs149979892 50307685 + 50307665 50307705 41 GTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAG GTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAG < 41bp 1 0.0925141699798388 1 0.178353816270828 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP2A1 ENSG00000196961 intronic Human protein_coding chr19:50307685 chr19:50307691 . . 0 27 hm5C_associated_SNPs_13917 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15739 DeepMRMD:1;iRNA_m5C:0.999536712157815 15740 chr19 50307691 50307691 1 + G A rs149979892 50307688 + 50307668 50307708 41 GGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAG GGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAG < 41bp 1 0.202121686122938 1 0.235723525285721 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP2A1 ENSG00000196961 intronic Human protein_coding chr19:50307688 chr19:50307691 . . 0 24 hm5C_associated_SNPs_13918 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15740 DeepMRMD:1;iRNA_m5C:0.999536712157815 15741 chr19 50307691 50307691 1 + G A rs149979892 50307697 + 50307677 50307717 41 AGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAGTGGCGTG AGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAGTGGCGTG < 41bp 1 0.645093032630076 1 0.770997166633606 experiment 0.709813934739848 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP2A1 ENSG00000196961 intronic Human protein_coding chr19:50307697 chr19:50307691 . . 0 15 hm5C_associated_SNPs_13920 0 0 0 0 0 Ribosome 1 0.500231643921089 0.458005666732788 0.999536712157821 hm5C_site_15741 DeepMRMD:0.458005666732788;iRNA_m5C:0.999536712157821 15742 chr19 50307714 50307714 1 + C T rs145217765 50307697 + 50307677 50307717 41 AGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAGTGGCGTG AGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAGTGGTGTG < 41bp 1 0.60380024673621 1 0.854150891304016 experiment 0.792399506527581 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AP2A1 ENSG00000196961 intronic Human protein_coding chr19:50307697 chr19:50307714 . . 0 38 hm5C_associated_SNPs_13922 0 0 0 0 0 Ribosome 1 0.500231643921097 0.291698217391968 0.999536712157806 hm5C_site_15742 DeepMRMD:0.291698217391968;iRNA_m5C:0.999536712157806 15743 chr19 50333114 50333114 1 + C A rs149788020 50333110 + 50333090 50333130 41 TCGGCTTCTGTTTGAGAAGGCAGCCCCCCCGGCCTTGCTGG TCGGCTTCTGTTTGAGAAGGCAGCACCCCCGGCCTTGCTGG < 41bp 1 0.575377801472489 1 0.294903010129929 experiment 0.849244397055021 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50333110 chr19:50333114 synonymous SNV . 0 25 hm5C_associated_SNPs_13924 2 0 1 0 1 chromatin 1 0.500231643921099 1 0.999536712157802 hm5C_site_15743 DeepMRMD:1;iRNA_m5C:0.999536712157802 not specified not specified 15744 chr19 50385611 50385611 1 + C G rs146013154 50385593 + 50385573 50385613 41 GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGC GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCGGC < 41bp 1 0.273271878416691 1 0.169112622737885 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385593 chr19:50385611 nonsynonymous SNV 0.087 0 39 hm5C_associated_SNPs_13925 0 0 1 0 1 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_15744 DeepMRMD:1;iRNA_m5C:0.999536712157815 15745 chr19 50385611 50385611 1 + C G rs146013154 50385594 + 50385574 50385614 41 CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGCC CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCGGCC < 41bp 1 0.525805673712302 1 0.281597644090652 experiment 0.948388652575395 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385594 chr19:50385611 nonsynonymous SNV 0.087 0 38 hm5C_associated_SNPs_13926 0 0 1 0 1 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_15745 DeepMRMD:1;iRNA_m5C:0.999536712157815 15746 chr19 50432427 50432427 1 + A G rs1152232 50432420 - 50432400 50432440 41 GACAGATATATACTGGGTGGCGGAGCACGGCCCTCCCGGAT GACAGATATATACCGGGTGGCGGAGCACGGCCCTCCCGGAT < 41bp 1 0.579532788651779 1 0.902491688728333 experiment 0.840934422696442 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF5 ENSG00000169136;ENSG00000213024 UTR5 Human other chr19:50432420 chr19:50432427 . . 0 14 hm5C_associated_SNPs_13927 0 0 1 0 0 Cytosol 1 0.500231643921092 0.195016622543334 0.999536712157815 hm5C_site_15746 DeepMRMD:0.195016622543334;iRNA_m5C:0.999536712157815 15747 chr19 50755955 50755955 1 + C T rs77895476 50755957 + 50755937 50755977 41 CCCTCTGAATGACAACGTCGCAGCCTTGCTCCACCAGAGCA CCCTCTGAATGACAACGTTGCAGCCTTGCTCCACCAGAGCA < 41bp 1 0.156326146194525 1 0.28753125667572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50755957 chr19:50755955 synonymous SNV . 0 19 hm5C_associated_SNPs_13929 2 0 1 0 2 cytosol 1 0.500231643921005 1 0.999536712157991 hm5C_site_15747 DeepMRMD:1;iRNA_m5C:0.999536712157991 not specified not specified 15748 chr19 50881882 50881882 1 + C T rs34563687 50881902 + 50881882 50881922 41 CTCAGCCTCTGGGCCTGGGGCTTCCCCTGGTGGATCTGAGG TTCAGCCTCTGGGCCTGGGGCTTCCCCTGGTGGATCTGAGG < 41bp 1 0.0840564270158682 1 0.0866008102893829 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881902 chr19:50881882 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_13930 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15748 DeepMRMD:1;iRNA_m5C:0.999536712157815 15749 chr19 50881886 50881886 1 + G A rs199660328 50881902 + 50881882 50881922 41 CTCAGCCTCTGGGCCTGGGGCTTCCCCTGGTGGATCTGAGG CTCAACCTCTGGGCCTGGGGCTTCCCCTGGTGGATCTGAGG < 41bp 1 0.0821695470453032 1 0.0816403925418854 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881902 chr19:50881886 nonsynonymous SNV 0.208 1 5 hm5C_associated_SNPs_13931 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15749 DeepMRMD:1;iRNA_m5C:0.999536712157815 15750 chr19 50881906 50881906 1 + C T rs117587314 50881902 + 50881882 50881922 41 CTCAGCCTCTGGGCCTGGGGCTTCCCCTGGTGGATCTGAGG CTCAGCCTCTGGGCCTGGGGCTTCTCCTGGTGGATCTGAGG < 41bp 1 0.115958244709867 1 0.0608398914337158 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881902 chr19:50881906 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_13932 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15750 DeepMRMD:1;iRNA_m5C:0.999536712157815 15751 chr19 50885890 50885890 1 + C T rs369185145 50885873 + 50885853 50885893 41 CGAGTGAGGGGCTGGCCACCCAGCCCCACAGCCTTGCCTGA CGAGTGAGGGGCTGGCCACCCAGCCCCACAGCCTTGCTTGA < 41bp 1 0.504220522717078 1 0.881018042564392 experiment 0.991558954565843 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NR1H2 ENSG00000131408 UTR3 Human protein_coding chr19:50885873 chr19:50885890 . . 0 38 hm5C_associated_SNPs_13933 0 0 0 0 0 Ribosome 1 0.500231643782794 0.237963914871216 0.999536712434411 hm5C_site_15751 DeepMRMD:0.237963914871216;iRNA_m5C:0.999536712434411 15752 chr19 50885890 50885890 1 + C T rs369185145 50885876 + 50885856 50885896 41 GTGAGGGGCTGGCCACCCAGCCCCACAGCCTTGCCTGACCA GTGAGGGGCTGGCCACCCAGCCCCACAGCCTTGCTTGACCA < 41bp 1 0.456919067187471 1 0.331862062215805 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NR1H2 ENSG00000131408 UTR3 Human protein_coding chr19:50885876 chr19:50885890 . . 0 35 hm5C_associated_SNPs_13934 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15752 DeepMRMD:1;iRNA_m5C:0.999536712157815 15753 chr19 50885890 50885890 1 + C T rs369185145 50885877 + 50885857 50885897 41 TGAGGGGCTGGCCACCCAGCCCCACAGCCTTGCCTGACCAC TGAGGGGCTGGCCACCCAGCCCCACAGCCTTGCTTGACCAC < 41bp 1 0.0878497735723674 1 0.13921183347702 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NR1H2 ENSG00000131408 UTR3 Human protein_coding chr19:50885877 chr19:50885890 . . 0 34 hm5C_associated_SNPs_13935 0 0 0 0 0 Ribosome 1 0.500231643920993 1 0.999536712158013 hm5C_site_15753 DeepMRMD:1;iRNA_m5C:0.999536712158013 15754 chr19 50885890 50885890 1 + C T rs369185145 50885878 + 50885858 50885898 41 GAGGGGCTGGCCACCCAGCCCCACAGCCTTGCCTGACCACC GAGGGGCTGGCCACCCAGCCCCACAGCCTTGCTTGACCACC < 41bp 1 0.348482357506011 1 0.0584924817085266 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NR1H2 ENSG00000131408 UTR3 Human protein_coding chr19:50885878 chr19:50885890 . . 0 33 hm5C_associated_SNPs_13936 0 0 0 0 0 Ribosome 1 0.50023164392106 1 0.99953671215788 hm5C_site_15754 DeepMRMD:1;iRNA_m5C:0.99953671215788 15755 chr19 50885890 50885890 1 + C T rs369185145 50885879 + 50885859 50885899 41 AGGGGCTGGCCACCCAGCCCCACAGCCTTGCCTGACCACCC AGGGGCTGGCCACCCAGCCCCACAGCCTTGCTTGACCACCC < 41bp 1 0.498898241245382 1 0.585391223430634 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NR1H2 ENSG00000131408 UTR3 Human protein_coding chr19:50885879 chr19:50885890 . . 0 32 hm5C_associated_SNPs_13937 0 0 0 0 0 Ribosome 1 0.500231643956022 0.829217553138732 0.999536712087957 hm5C_site_15755 DeepMRMD:0.829217553138732;iRNA_m5C:0.999536712087957 15756 chr19 50905042 50905042 1 + G A rs20582 50905041 + 50905021 50905061 41 CTGTGACCCCACAGGCCCAGCGCAGCCTGTGCCTGGGGGGC CTGTGACCCCACAGGCCCAGCACAGCCTGTGCCTGGGGGGC < 41bp 1 0.366268903406819 1 0.184560835361481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905041 chr19:50905042 synonymous SNV . 0 22 hm5C_associated_SNPs_13940 1 0 1 0 1 Nucleus 1 0.500231643925253 1 0.999536712149493 hm5C_site_15756 DeepMRMD:1;iRNA_m5C:0.999536712149493 not specified not specified 15757 chr19 50912126 50912126 1 + G A rs1726790 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACACTCCTTCGGCCCGGGACTG < 41bp 1 0.155154516436718 1 0.085919588804245 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912126 synonymous SNV . 0 22 hm5C_associated_SNPs_13941 2 0 1 0 2 Nucleus 1 0.500231643919323 1 0.999536712161355 hm5C_site_15757 DeepMRMD:1;iRNA_m5C:0.999536712161355 not specified not specified 15758 chr19 50979765 50979765 1 + C G rs376928120 50979758 + 50979738 50979778 41 CCTCCCGGCGTGCTCCGCGGCTCTTGGCTCACAGCCGTCCC CCTCCCGGCGTGCTCCGCGGCTCTTGGGTCACAGCCGTCCC < 41bp 1 0.348791649199155 1 0.0784197747707367 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EMC10;FAM71E1 ENSG00000142530;ENSG00000161671 UTR5 Human other chr19:50979758 chr19:50979765 . . 0 28 hm5C_associated_SNPs_13942 0 0 0 0 0 unknown 1 0.500231643921088 1 0.999536712157825 hm5C_site_15758 DeepMRMD:1;iRNA_m5C:0.999536712157825 15759 chr19 50979773 50979773 1 + C A rs111640675 50979758 + 50979738 50979778 41 CCTCCCGGCGTGCTCCGCGGCTCTTGGCTCACAGCCGTCCC CCTCCCGGCGTGCTCCGCGGCTCTTGGCTCACAGCAGTCCC < 41bp 1 0.288646273850277 1 0.081376850605011 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EMC10;FAM71E1 ENSG00000142530;ENSG00000161671 UTR5 Human other chr19:50979758 chr19:50979773 . . 0 36 hm5C_associated_SNPs_13943 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15759 DeepMRMD:1;iRNA_m5C:0.999536712157815 15760 chr19 50986074 50986074 1 + G A rs14031 50986072 + 50986052 50986092 41 AAAGAGTCGGGGCTGGATGGCCGGGGGCTTCTGGGCCCGAC AAAGAGTCGGGGCTGGATGGCCAGGGGCTTCTGGGCCCGAC < 41bp 1 0.648488782745099 1 0.877227187156677 experiment 0.703022434509802 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EMC10 ENSG00000268854 ncRNA_intronic Human antisense chr19:50986072 chr19:50986074 . . 0 23 hm5C_associated_SNPs_13944 0 0 1 0 0 Cytosol 1 0.500231643006254 0.245545625686646 0.999536713987492 hm5C_site_15760 DeepMRMD:0.245545625686646;iRNA_m5C:0.999536713987492 15761 chr19 51227325 51227325 1 + C G rs2303688 51227338 + 51227318 51227358 41 CCCACCCCTGAGGACATCGTCACTTACATCCGTGAGTAACC CCCACCCGTGAGGACATCGTCACTTACATCCGTGAGTAACC < 41bp 1 0.183319648569462 1 0.0640768110752106 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLEC11A ENSG00000105472 CDS Human protein_coding chr19:51227338 chr19:51227325 nonsynonymous SNV 0.838 1 8 hm5C_associated_SNPs_13946 0 0 0 0 1 Ribosome 1 0.500231643920933 1 0.999536712158135 hm5C_site_15761 DeepMRMD:1;iRNA_m5C:0.999536712158135 15762 chr19 52729370 52729370 1 + C T rs41275804 52729386 + 52729366 52729406 41 AGCACGGTTCCTCCTCTCCCCAGCCTGGGAAGATGTCTCAC AGCATGGTTCCTCCTCTCCCCAGCCTGGGAAGATGTCTCAC < 41bp 1 0.511495947580357 1 0.389029502868652 experiment 0.977008104839285 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP2R1A ENSG00000268015 ncRNA_intronic Human antisense chr19:52729386 chr19:52729370 . . 0 5 hm5C_associated_SNPs_13947 0 0 1 0 0 Ribosome 1 0.500231536356935 1 0.99953692728613 hm5C_site_15762 DeepMRMD:1;iRNA_m5C:0.99953692728613 15763 chr19 52795158 52795158 1 + C A rs77506493 52795154 + 52795134 52795174 41 TATGGGCAACGTAGCAAGGCCCATCCCTACAAAATAAAAAA TATGGGCAACGTAGCAAGGCCCATACCTACAAAATAAAAAA < 41bp 1 0.203985964055102 1 0.207830011844635 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52795154 chr19:52795158 . . 0 25 hm5C_associated_SNPs_13949 0 0 1 0 0 chromatin 1 0.500231643919951 1 0.999536712160098 hm5C_site_15763 DeepMRMD:1;iRNA_m5C:0.999536712160098 15764 chr19 52905219 52905219 1 + A G rs375181459 52905209 + 52905189 52905229 41 TTGACATTCAGGATTCACTTCCAAAGAGACATATTATGCAA TTGACATTCAGGATTCACTTCCAAAGAGACGTATTATGCAA < 41bp 1 0.128932221256297 1 0.477950870990753 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF528 ENSG00000167555 UTR5 Human protein_coding chr19:52905209 chr19:52905219 . . 0 31 hm5C_associated_SNPs_13950 0 0 0 0 2 Nucleus 1 0.5002316428242 1 0.999536714351601 hm5C_site_15764 DeepMRMD:1;iRNA_m5C:0.999536714351601 15765 chr19 53067494 53067494 1 + C T rs528021995 53067492 + 53067472 53067512 41 GCTGGGTCTATAAGGAATTGCACGTGAGATGGCACACATAT GCTGGGTCTATAAGGAATTGCATGTGAGATGGCACACATAT < 41bp 1 0.466282356508487 1 0.129822462797165 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF808;ZNF701 ENSG00000198482 UTR3 Human protein_coding chr19:53067492 chr19:53067494 . . 0 23 hm5C_associated_SNPs_13951 0 0 0 0 0 unknown 1 0.500231643382191 1 0.999536713235619 hm5C_site_15765 DeepMRMD:1;iRNA_m5C:0.999536713235619 15766 chr19 54606446 54606446 1 + C G rs138758439 54606432 + 54606412 54606452 41 ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGA ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGGCTGGGA < 41bp 1 0.103061004035169 1 0.0950077176094055 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606432 chr19:54606446 nonsynonymous SNV 0.751 1 35 hm5C_associated_SNPs_13952 0 0 1 1 2 Ribosome 1 0.500231508698046 1 0.999536982603908 hm5C_site_15766 DeepMRMD:1;iRNA_m5C:0.999536982603908 15767 chr19 54631704 54631704 1 + G C rs201201131 54631708 + 54631688 54631728 41 AGATGAAGGAGCGGCTGGGGCTGACGGAGATCCGGAAGCAG AGATGAAGGAGCGGCTCGGGCTGACGGAGATCCGGAAGCAG < 41bp 1 0.520607627676212 1 0.181829810142517 experiment 0.958784744647576 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631708 chr19:54631704 synonymous SNV . 0 17 hm5C_associated_SNPs_13953 0 0 1 0 2 Cytosol 1 0.50023164391167 1 0.99953671217666 hm5C_site_15767 DeepMRMD:1;iRNA_m5C:0.99953671217666 15768 chr19 54634978 54634978 1 + G C rs587769211 54634972 + 54634952 54634992 41 GAACCTGCCCTGCCACTGGCCCCATTGCTGGGACTGCCCAG GAACCTGCCCTGCCACTGGCCCCATTCCTGGGACTGCCCAG < 41bp 1 0.301146948596687 1 0.0624024569988251 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 UTR3 Human protein_coding chr19:54634972 chr19:54634978 . . 0 27 hm5C_associated_SNPs_13955 0 0 1 0 0 Cytosol 1 0.500231643921091 1 0.999536712157817 hm5C_site_15768 DeepMRMD:1;iRNA_m5C:0.999536712157817 15769 chr19 54634978 54634978 1 + G C rs587769211 54634973 + 54634953 54634993 41 AACCTGCCCTGCCACTGGCCCCATTGCTGGGACTGCCCAGG AACCTGCCCTGCCACTGGCCCCATTCCTGGGACTGCCCAGG < 41bp 1 0.150324061155266 1 0.0510143637657166 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 UTR3 Human protein_coding chr19:54634973 chr19:54634978 . . 0 26 hm5C_associated_SNPs_13956 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15769 DeepMRMD:1;iRNA_m5C:0.999536712157815 15770 chr19 54634978 54634978 1 + G C rs587769211 54634985 + 54634965 54635005 41 CACTGGCCCCATTGCTGGGACTGCCCAGGGAGGAGGCCTTG CACTGGCCCCATTCCTGGGACTGCCCAGGGAGGAGGCCTTG < 41bp 1 0.530430669969192 1 0.0352198779582977 experiment 0.939138660061617 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 UTR3 Human protein_coding chr19:54634985 chr19:54634978 . . 0 14 hm5C_associated_SNPs_13957 0 0 1 0 0 Cytosol 1 0.500231374846007 1 0.999537250307986 hm5C_site_15770 DeepMRMD:1;iRNA_m5C:0.999537250307986 15771 chr19 54634979 54634979 1 + C T rs587642818 54634972 + 54634952 54634992 41 GAACCTGCCCTGCCACTGGCCCCATTGCTGGGACTGCCCAG GAACCTGCCCTGCCACTGGCCCCATTGTTGGGACTGCCCAG < 41bp 1 0.29518581777523 1 0.117136478424072 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 UTR3 Human protein_coding chr19:54634972 chr19:54634979 . . 0 28 hm5C_associated_SNPs_13958 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15771 DeepMRMD:1;iRNA_m5C:0.999536712157815 15772 chr19 54634979 54634979 1 + C T rs587642818 54634973 + 54634953 54634993 41 AACCTGCCCTGCCACTGGCCCCATTGCTGGGACTGCCCAGG AACCTGCCCTGCCACTGGCCCCATTGTTGGGACTGCCCAGG < 41bp 1 0.253880640180904 1 0.0549671351909637 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 UTR3 Human protein_coding chr19:54634973 chr19:54634979 . . 0 27 hm5C_associated_SNPs_13959 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15772 DeepMRMD:1;iRNA_m5C:0.999536712157815 15773 chr19 54634979 54634979 1 + C T rs587642818 54634985 + 54634965 54635005 41 CACTGGCCCCATTGCTGGGACTGCCCAGGGAGGAGGCCTTG CACTGGCCCCATTGTTGGGACTGCCCAGGGAGGAGGCCTTG < 41bp 1 0.566392342657897 1 0.0243116617202759 experiment 0.867215314684205 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 UTR3 Human protein_coding chr19:54634985 chr19:54634979 . . 0 15 hm5C_associated_SNPs_13960 0 0 1 0 0 Cytosol 1 0.500231643920408 1 0.999536712159184 hm5C_site_15773 DeepMRMD:1;iRNA_m5C:0.999536712159184 15774 chr19 54634980 54634980 1 + T C rs587720693 54634972 + 54634952 54634992 41 GAACCTGCCCTGCCACTGGCCCCATTGCTGGGACTGCCCAG GAACCTGCCCTGCCACTGGCCCCATTGCCGGGACTGCCCAG < 41bp 1 0.332365128636108 1 0.155141294002533 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 UTR3 Human protein_coding chr19:54634972 chr19:54634980 . . 0 29 hm5C_associated_SNPs_13961 0 0 1 0 0 Cytosol 1 0.500231641464244 1 0.999536717071512 hm5C_site_15774 DeepMRMD:1;iRNA_m5C:0.999536717071512 15775 chr19 54634980 54634980 1 + T C rs587720693 54634973 + 54634953 54634993 41 AACCTGCCCTGCCACTGGCCCCATTGCTGGGACTGCCCAGG AACCTGCCCTGCCACTGGCCCCATTGCCGGGACTGCCCAGG < 41bp 1 0.231287767035107 1 0.11077281832695 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 UTR3 Human protein_coding chr19:54634973 chr19:54634980 . . 0 28 hm5C_associated_SNPs_13962 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157813 hm5C_site_15775 DeepMRMD:1;iRNA_m5C:0.999536712157813 15776 chr19 54634980 54634980 1 + T C rs587720693 54634985 + 54634965 54635005 41 CACTGGCCCCATTGCTGGGACTGCCCAGGGAGGAGGCCTTG CACTGGCCCCATTGCCGGGACTGCCCAGGGAGGAGGCCTTG < 41bp 1 0.555494065491661 1 0.0318047404289246 experiment 0.889011869016678 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 UTR3 Human protein_coding chr19:54634985 chr19:54634980 . . 0 16 hm5C_associated_SNPs_13963 0 0 1 0 0 Cytosol 1 0.500231643300065 1 0.999536713399871 hm5C_site_15776 DeepMRMD:1;iRNA_m5C:0.999536713399871 15777 chr19 54968038 54968038 1 + A G rs35336528 54968028 + 54968008 54968048 41 GAGCTGCAGATCGTGGGCACCTGCCCTGACATCACCAAGCA GAGCTGCAGATCGTGGGCACCTGCCCTGACGTCACCAAGCA < 41bp 1 0.277716216745484 1 0.487178444862366 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54968028 chr19:54968038 nonsynonymous SNV 0.996 0 31 hm5C_associated_SNPs_13964 0 0 1 0 1 chromatin 1 0.500231143453925 1 0.999537713092151 hm5C_site_15777 DeepMRMD:1;iRNA_m5C:0.999537713092151 15778 chr19 54972163 54972163 1 + C T rs117449644 54972145 + 54972125 54972165 41 GGCGGGGGCAGGGGCTGCAGCCCCCAGCGCTGCCTTTGCGG GGCGGGGGCAGGGGCTGCAGCCCCCAGCGCTGCCTTTGTGG < 41bp 1 0.270424717754674 1 0.316470414400101 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972145 chr19:54972163 . . 0 39 hm5C_associated_SNPs_13965 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15778 DeepMRMD:1;iRNA_m5C:0.999536712157815 15779 chr19 54972163 54972163 1 + C T rs117449644 54972146 + 54972126 54972166 41 GCGGGGGCAGGGGCTGCAGCCCCCAGCGCTGCCTTTGCGGA GCGGGGGCAGGGGCTGCAGCCCCCAGCGCTGCCTTTGTGGA < 41bp 1 0.517530661418581 1 0.755773186683655 experiment 0.964938677162837 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972146 chr19:54972163 . . 0 38 hm5C_associated_SNPs_13966 0 0 1 0 0 chromatin 1 0.500231643881874 0.48845362663269 0.999536712236251 hm5C_site_15779 DeepMRMD:0.48845362663269;iRNA_m5C:0.999536712236251 15780 chr19 54972653 54972653 1 + G T rs183600073 54972656 + 54972636 54972676 41 GACTGTGCCCGTCCTCGGCCCCCCACCCTGAAGTGCCAGCA GACTGTGCCCGTCCTCGTCCCCCCACCCTGAAGTGCCAGCA < 41bp 1 0.211815622873631 1 0.341613054275513 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972656 chr19:54972653 . . 0 18 hm5C_associated_SNPs_13967 0 0 1 1 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15780 DeepMRMD:1;iRNA_m5C:0.999536712157815 15781 chr19 54972653 54972653 1 + G T rs183600073 54972657 + 54972637 54972677 41 ACTGTGCCCGTCCTCGGCCCCCCACCCTGAAGTGCCAGCAC ACTGTGCCCGTCCTCGTCCCCCCACCCTGAAGTGCCAGCAC < 41bp 1 0.0958592016218046 1 0.155399769544601 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972657 chr19:54972653 . . 0 17 hm5C_associated_SNPs_13968 0 0 1 1 0 chromatin 1 0.500231651170867 1 0.999536697658267 hm5C_site_15781 DeepMRMD:1;iRNA_m5C:0.999536697658267 15782 chr19 54972653 54972653 1 + G T rs183600073 54972658 + 54972638 54972678 41 CTGTGCCCGTCCTCGGCCCCCCACCCTGAAGTGCCAGCACC CTGTGCCCGTCCTCGTCCCCCCACCCTGAAGTGCCAGCACC < 41bp 1 0.0572789887335051 1 0.405533045530319 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972658 chr19:54972653 . . 0 16 hm5C_associated_SNPs_13969 0 0 1 1 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15782 DeepMRMD:1;iRNA_m5C:0.999536712157815 15783 chr19 54972653 54972653 1 + G T rs183600073 54972659 + 54972639 54972679 41 TGTGCCCGTCCTCGGCCCCCCACCCTGAAGTGCCAGCACCA TGTGCCCGTCCTCGTCCCCCCACCCTGAAGTGCCAGCACCA < 41bp 1 0.163402069525589 1 0.620402336120605 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972659 chr19:54972653 . . 0 15 hm5C_associated_SNPs_13970 0 0 1 1 0 chromatin 1 0.500231655054736 0.75919532775879 0.999536689890529 hm5C_site_15783 DeepMRMD:0.75919532775879;iRNA_m5C:0.999536689890529 15784 chr19 54972653 54972653 1 + G T rs183600073 54972661 + 54972641 54972681 41 TGCCCGTCCTCGGCCCCCCACCCTGAAGTGCCAGCACCACC TGCCCGTCCTCGTCCCCCCACCCTGAAGTGCCAGCACCACC < 41bp 1 0.0607580629956287 1 0.561926186084747 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972661 chr19:54972653 . . 0 13 hm5C_associated_SNPs_13971 0 0 1 1 0 chromatin 1 0.500231643927225 0.876147627830506 0.99953671214555 hm5C_site_15784 DeepMRMD:0.876147627830506;iRNA_m5C:0.99953671214555 15785 chr19 54972653 54972653 1 + G T rs183600073 54972662 + 54972642 54972682 41 GCCCGTCCTCGGCCCCCCACCCTGAAGTGCCAGCACCACCA GCCCGTCCTCGTCCCCCCACCCTGAAGTGCCAGCACCACCA < 41bp 1 0.207342801877795 1 0.493400484323502 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 UTR3 Human protein_coding chr19:54972662 chr19:54972653 . . 0 12 hm5C_associated_SNPs_13972 0 0 1 1 0 chromatin 1 0.500231643934072 1 0.999536712131855 hm5C_site_15785 DeepMRMD:1;iRNA_m5C:0.999536712131855 15786 chr19 55147759 55147759 1 + C G rs146943329 55147762 + 55147742 55147782 41 TGCAGCCAAATGGGCAACGTCAGAGTGAGGAGCAGAGGCCA TGCAGCCAAATGGGCAAGGTCAGAGTGAGGAGCAGAGGCCA < 41bp 1 0.559573082969111 1 0.682311534881592 experiment 0.880853834061779 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control LILRB1 ENSG00000104972;ENSG00000224730 intronic Human other chr19:55147762 chr19:55147759 . . 0 18 hm5C_associated_SNPs_13973 0 0 0 0 0 exosome 1 0.500233504477739 0.635376930236816 0.999532991044521 hm5C_site_15786 DeepMRMD:0.635376930236816;iRNA_m5C:0.999532991044521 15787 chr19 55147782 55147782 1 + A G rs137913208 55147762 + 55147742 55147782 41 TGCAGCCAAATGGGCAACGTCAGAGTGAGGAGCAGAGGCCA TGCAGCCAAATGGGCAACGTCAGAGTGAGGAGCAGAGGCCG < 41bp 1 0.55665514254251 1 0.721493124961853 experiment 0.886689714914979 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control LILRB1 ENSG00000104972;ENSG00000224730 intronic Human other chr19:55147762 chr19:55147782 . . 0 41 hm5C_associated_SNPs_13974 0 0 0 0 0 exosome 1 0.500237554438475 0.557013750076294 0.999524891123051 hm5C_site_15787 DeepMRMD:0.557013750076294;iRNA_m5C:0.999524891123051 15788 chr19 55400292 55400292 1 + G A rs62123425 55400295 + 55400275 55400315 41 ACACAACCTGCCTGGCCGGGCGTGGTGGCGTGAGCCTGTCG ACACAACCTGCCTGGCCAGGCGTGGTGGCGTGAGCCTGTCG < 41bp 1 0.52139810920691 1 0.480024814605713 experiment 0.95720378158618 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control FCAR ENSG00000186431 UTR3 Human protein_coding chr19:55400295 chr19:55400292 . . 0 18 hm5C_associated_SNPs_13975 0 0 0 0 0 Nucleus 1 0.500231643919702 1 0.999536712160595 hm5C_site_15788 DeepMRMD:1;iRNA_m5C:0.999536712160595 15789 chr19 55400315 55400315 1 + G A rs369779753 55400295 + 55400275 55400315 41 ACACAACCTGCCTGGCCGGGCGTGGTGGCGTGAGCCTGTCG ACACAACCTGCCTGGCCGGGCGTGGTGGCGTGAGCCTGTCA < 41bp 1 0.42544713671881 1 0.51923006772995 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control FCAR ENSG00000186431 UTR3 Human protein_coding chr19:55400295 chr19:55400315 . . 0 41 hm5C_associated_SNPs_13976 0 0 0 0 0 Nucleus 1 0.500231643921417 0.9615398645401 0.999536712157167 hm5C_site_15789 DeepMRMD:0.9615398645401;iRNA_m5C:0.999536712157167 15790 chr19 55897302 55897302 1 + C G rs116572311 55897317 + 55897297 55897337 41 TTCCTCTTTCCGTCTCAGGTCGCCGCTGCGAAGGGAGGTGA TTCCTGTTTCCGTCTCAGGTCGCCGCTGCGAAGGGAGGTGA < 41bp 1 0.529413492168192 1 0.36382469534874 experiment 0.941173015663615 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL28 ENSG00000108107 UTR5 Human protein_coding chr19:55897317 chr19:55897302 . . 0 6 hm5C_associated_SNPs_13978 0 0 1 0 1 Cytosol 1 0.500231643927588 1 0.999536712144823 hm5C_site_15790 DeepMRMD:1;iRNA_m5C:0.999536712144823 15791 chr19 55897302 55897302 1 + C G rs116572311 55897319 + 55897299 55897339 41 CCTCTTTCCGTCTCAGGTCGCCGCTGCGAAGGGAGGTGAGC CCTGTTTCCGTCTCAGGTCGCCGCTGCGAAGGGAGGTGAGC < 41bp 1 0.208027001409833 1 0.316331088542938 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL28 ENSG00000108107 UTR5 Human protein_coding chr19:55897319 chr19:55897302 . . 0 4 hm5C_associated_SNPs_13979 0 0 1 0 1 Cytosol 1 0.500231643921095 1 0.99953671215781 hm5C_site_15791 DeepMRMD:1;iRNA_m5C:0.99953671215781 15792 chr19 55897327 55897327 1 + A C rs17700376 55897317 + 55897297 55897337 41 TTCCTCTTTCCGTCTCAGGTCGCCGCTGCGAAGGGAGGTGA TTCCTCTTTCCGTCTCAGGTCGCCGCTGCGCAGGGAGGTGA < 41bp 1 0.499634024133543 1 0.376830041408539 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL28 ENSG00000108107 UTR5 Human protein_coding chr19:55897317 chr19:55897327 . . 0 31 hm5C_associated_SNPs_13980 0 0 1 0 1 Cytosol 1 0.500231643953695 1 0.999536712092611 hm5C_site_15792 DeepMRMD:1;iRNA_m5C:0.999536712092611 15793 chr19 55897327 55897327 1 + A C rs17700376 55897319 + 55897299 55897339 41 CCTCTTTCCGTCTCAGGTCGCCGCTGCGAAGGGAGGTGAGC CCTCTTTCCGTCTCAGGTCGCCGCTGCGCAGGGAGGTGAGC < 41bp 1 0.208488557779194 1 0.303070783615112 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL28 ENSG00000108107 UTR5 Human protein_coding chr19:55897319 chr19:55897327 . . 0 29 hm5C_associated_SNPs_13981 0 0 1 0 1 Cytosol 1 0.500231643928842 1 0.999536712142315 hm5C_site_15793 DeepMRMD:1;iRNA_m5C:0.999536712142315 15794 chr19 55901857 55901857 1 + G A rs143306924 55901856 + 55901836 55901876 41 GTGCTGGCATTACAGGCGCTCGAGGCTTTCTGATGTGGCTG GTGCTGGCATTACAGGCGCTCAAGGCTTTCTGATGTGGCTG < 41bp 1 0.692821313980563 1 0.734349012374878 experiment 0.614357372038875 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL28 ENSG00000108107 UTR3 Human protein_coding chr19:55901856 chr19:55901857 . . 0 22 hm5C_associated_SNPs_13983 0 0 1 0 0 Cytosol 1 0.500231643495279 0.531301975250244 0.999536713009443 hm5C_site_15794 DeepMRMD:0.531301975250244;iRNA_m5C:0.999536713009443 15795 chr19 55993895 55993895 1 + C T rs541614777 55993914 + 55993894 55993934 41 CCGCCCCCGCTTCTGCGGAGCGGCCCTACAAATGTGCCGAG CTGCCCCCGCTTCTGCGGAGCGGCCCTACAAATGTGCCGAG < 41bp 1 0.321442824117306 1 0.399801403284073 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF628 ENSG00000197483 CDS Human protein_coding chr19:55993914 chr19:55993895 synonymous SNV . 0 2 hm5C_associated_SNPs_13987 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15795 DeepMRMD:1;iRNA_m5C:0.999536712157815 15796 chr19 55994344 55994344 1 + G A rs139724904 55994334 + 55994314 55994354 41 AGCGCGTGCACACGGGCGAGCGGCCCTTCCGCTGCCCGCTC AGCGCGTGCACACGGGCGAGCGGCCCTTCCACTGCCCGCTC < 41bp 1 0.540850350752856 1 0.695859253406525 experiment 0.918299298494287 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF628 ENSG00000197483 CDS Human protein_coding chr19:55994334 chr19:55994344 nonsynonymous SNV 0.996 1 31 hm5C_associated_SNPs_13988 0 0 0 0 0 exosome 1 0.500232963137346 0.60828149318695 0.999534073725308 hm5C_site_15796 DeepMRMD:0.60828149318695;iRNA_m5C:0.999534073725308 15797 chr19 56152434 56152434 1 + C T rs561338539 56152437 + 56152417 56152457 41 CCCCGCGTCCCCGGCGCCGCCGGCCCGGAGCTGCCCGGAAG CCCCGCGTCCCCGGCGCTGCCGGCCCGGAGCTGCCCGGAAG < 41bp 1 0.54807285886806 1 0.446351289749146 experiment 0.903854282263881 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF580 ENSG00000171425;ENSG00000173581;ENSG00000213015 UTR5 Human other chr19:56152437 chr19:56152434 . . 0 18 hm5C_associated_SNPs_13989 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15797 DeepMRMD:1;iRNA_m5C:0.999536712157815 15798 chr19 56154472 56154472 1 + C T rs188200089 56154462 + 56154442 56154482 41 CTGACCCACACAGCGTCACTCACTCCCACACACACCCCCTG CTGACCCACACAGCGTCACTCACTCCCACATACACCCCCTG < 41bp 1 0.161591311217438 1 0.201291233301163 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control ZNF580 ENSG00000213015 UTR3 Human protein_coding chr19:56154462 chr19:56154472 . . 0 31 hm5C_associated_SNPs_13990 0 0 1 0 0 nucleus 1 0.500231643939292 1 0.999536712121416 hm5C_site_15798 DeepMRMD:1;iRNA_m5C:0.999536712121416 15799 chr19 56172453 56172453 1 + C T rs114531079 56172435 + 56172415 56172455 41 ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGG ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGATGG < 41bp 1 0.581583743811509 1 0.667426586151123 experiment 0.836832512376982 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172435 chr19:56172453 synonymous SNV . 0 39 hm5C_associated_SNPs_13991 0 0 1 0 1 Ribosome 1 0.500231643921092 0.665146827697754 0.999536712157815 hm5C_site_15799 DeepMRMD:0.665146827697754;iRNA_m5C:0.999536712157815 15800 chr19 56172453 56172453 1 + C T rs114531079 56172437 + 56172417 56172457 41 TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTC TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGATGGTC < 41bp 1 0.149488538667489 1 0.100988328456879 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172437 chr19:56172453 synonymous SNV . 0 37 hm5C_associated_SNPs_13992 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15800 DeepMRMD:1;iRNA_m5C:0.999536712157815 15801 chr19 56172453 56172453 1 + C T rs114531079 56172438 + 56172418 56172458 41 CCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTCT CCAGCCACTGCTCTTCTCCCCACCATGACCCCTGATGGTCT < 41bp 1 0.662969792412587 1 0.663124978542328 experiment 0.674060415174826 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172438 chr19:56172453 synonymous SNV . 0 36 hm5C_associated_SNPs_13993 0 0 1 0 1 Ribosome 1 0.500231573572975 0.673750042915344 0.99953685285405 hm5C_site_15801 DeepMRMD:0.673750042915344;iRNA_m5C:0.99953685285405 15802 chr19 56186643 56186643 1 + G T rs567640180 56186624 + 56186604 56186644 41 GTCTCCTCGGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCGC GTCTCCTCGGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCTC < 41bp 1 0.451292262322818 1 0.0727255940437317 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EPN1 ENSG00000063245 UTR5 Human protein_coding chr19:56186624 chr19:56186643 . . 0 40 hm5C_associated_SNPs_13994 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15802 DeepMRMD:1;iRNA_m5C:0.999536712157815 15803 chr19 56186643 56186643 1 + G T rs567640180 56186626 + 56186606 56186646 41 CTCCTCGGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCGCCC CTCCTCGGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCTCCC < 41bp 1 0.456188586217701 1 0.087258905172348 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EPN1 ENSG00000063245 UTR5 Human protein_coding chr19:56186626 chr19:56186643 . . 0 38 hm5C_associated_SNPs_13996 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15803 DeepMRMD:1;iRNA_m5C:0.999536712157815 15804 chr19 56186643 56186643 1 + G T rs567640180 56186627 + 56186607 56186647 41 TCCTCGGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCGCCCC TCCTCGGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCTCCCC < 41bp 1 0.333347109717278 1 0.138757050037384 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EPN1 ENSG00000063245 UTR5 Human protein_coding chr19:56186627 chr19:56186643 . . 0 37 hm5C_associated_SNPs_13997 0 0 1 0 0 chromatin 1 0.500231644818163 1 0.999536710363674 hm5C_site_15804 DeepMRMD:1;iRNA_m5C:0.999536710363674 15805 chr19 56186643 56186643 1 + G T rs567640180 56186628 + 56186608 56186648 41 CCTCGGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCGCCCCT CCTCGGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCTCCCCT < 41bp 1 0.593875596582447 1 0.332796633243561 experiment 0.812248806835106 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EPN1 ENSG00000063245 UTR5 Human protein_coding chr19:56186628 chr19:56186643 . . 0 36 hm5C_associated_SNPs_13998 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15805 DeepMRMD:1;iRNA_m5C:0.999536712157815 15806 chr19 56186643 56186643 1 + G T rs567640180 56186630 + 56186610 56186650 41 TCGGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCGCCCCTTC TCGGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCTCCCCTTC < 41bp 1 0.648682723653667 1 0.209959506988525 experiment 0.702634552692667 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EPN1 ENSG00000063245 UTR5 Human protein_coding chr19:56186630 chr19:56186643 . . 0 34 hm5C_associated_SNPs_13999 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15806 DeepMRMD:1;iRNA_m5C:0.999536712157815 15807 chr19 56186643 56186643 1 + G T rs567640180 56186631 + 56186611 56186651 41 CGGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCGCCCCTTCT CGGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCTCCCCTTCT < 41bp 1 0.382529811851399 1 0.34892326593399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EPN1 ENSG00000063245 UTR5 Human protein_coding chr19:56186631 chr19:56186643 . . 0 33 hm5C_associated_SNPs_14000 0 0 1 0 0 chromatin 1 0.500231644064346 1 0.999536711871309 hm5C_site_15807 DeepMRMD:1;iRNA_m5C:0.999536711871309 15808 chr19 56186643 56186643 1 + G T rs567640180 56186632 + 56186612 56186652 41 GGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCGCCCCTTCTG GGCGGCTCCCCTCCCCCGCCCGGCTCTCCGCTCCCCTTCTG < 41bp 1 0.687637766335423 1 0.538191616535187 experiment 0.624724467329154 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EPN1 ENSG00000063245 UTR5 Human protein_coding chr19:56186632 chr19:56186643 . . 0 32 hm5C_associated_SNPs_14001 0 0 1 0 0 chromatin 1 0.500231643921092 0.923616766929626 0.999536712157815 hm5C_site_15808 DeepMRMD:0.923616766929626;iRNA_m5C:0.999536712157815 15809 chr19 56657749 56657749 1 + C G rs531556902 56657743 + 56657723 56657763 41 CCTCACCACCCGAGTGAGCGCTGCCCCCTCACAGAGACCTC CCTCACCACCCGAGTGAGCGCTGCCCGCTCACAGAGACCTC < 41bp 1 0.444709722568139 1 0.165147632360458 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF444 ENSG00000167685 UTR5 Human protein_coding chr19:56657743 chr19:56657749 . . 0 27 hm5C_associated_SNPs_14003 0 0 1 0 1 Cytosol 1 0.500230979848395 1 0.999538040303211 hm5C_site_15809 DeepMRMD:1;iRNA_m5C:0.999538040303211 15810 chr19 56671530 56671530 1 + C A rs114090769 56671550 + 56671530 56671570 41 CGGATGGTGGAGGCCCCTTCCCGCCCTGGCCCTTGGGTTAG AGGATGGTGGAGGCCCCTTCCCGCCCTGGCCCTTGGGTTAG < 41bp 1 0.350167704802103 1 0.447995364665985 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF444 ENSG00000167685 CDS Human protein_coding chr19:56671550 chr19:56671530 nonsynonymous SNV 0.008 3 1 hm5C_associated_SNPs_14004 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15810 DeepMRMD:1;iRNA_m5C:0.999536712157815 15811 chr19 57050430 57050430 1 + C T rs189847863 57050446 + 57050426 57050466 41 GCCGCTCCCGGGTAGAGGCGCCCCCCGCACAAAGCCCCGGG GCCGTTCCCGGGTAGAGGCGCCCCCCGCACAAAGCCCCGGG < 41bp 1 0.326909464460078 1 0.110292106866837 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP28 ENSG00000196867 CDS Human protein_coding chr19:57050446 chr19:57050430 nonsynonymous SNV 0.000 0 5 hm5C_associated_SNPs_14005 0 0 1 0 0 exosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_15811 DeepMRMD:1;iRNA_m5C:0.999536712157813 15812 chr19 57050430 57050430 1 + C T rs189847863 57050447 + 57050427 57050467 41 CCGCTCCCGGGTAGAGGCGCCCCCCGCACAAAGCCCCGGGC CCGTTCCCGGGTAGAGGCGCCCCCCGCACAAAGCCCCGGGC < 41bp 1 0.337581813418635 1 0.118879497051239 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP28 ENSG00000196867 CDS Human protein_coding chr19:57050447 chr19:57050430 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_14006 0 0 1 0 0 exosome 1 0.500231643921102 1 0.999536712157795 hm5C_site_15812 DeepMRMD:1;iRNA_m5C:0.999536712157795 15813 chr19 57050434 57050434 1 + C G rs181108606 57050446 + 57050426 57050466 41 GCCGCTCCCGGGTAGAGGCGCCCCCCGCACAAAGCCCCGGG GCCGCTCCGGGGTAGAGGCGCCCCCCGCACAAAGCCCCGGG < 41bp 1 0.395457258254816 1 0.0840331315994263 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP28 ENSG00000196867 CDS Human protein_coding chr19:57050446 chr19:57050434 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_14009 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15813 DeepMRMD:1;iRNA_m5C:0.999536712157815 15814 chr19 57050434 57050434 1 + C G rs181108606 57050447 + 57050427 57050467 41 CCGCTCCCGGGTAGAGGCGCCCCCCGCACAAAGCCCCGGGC CCGCTCCGGGGTAGAGGCGCCCCCCGCACAAAGCCCCGGGC < 41bp 1 0.409175994996244 1 0.200893193483353 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP28 ENSG00000196867 CDS Human protein_coding chr19:57050447 chr19:57050434 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_14010 0 0 1 0 0 exosome 1 0.500231643975924 1 0.999536712048152 hm5C_site_15814 DeepMRMD:1;iRNA_m5C:0.999536712048152 15815 chr19 57050444 57050444 1 + C A rs61730414 57050446 + 57050426 57050466 41 GCCGCTCCCGGGTAGAGGCGCCCCCCGCACAAAGCCCCGGG GCCGCTCCCGGGTAGAGGAGCCCCCCGCACAAAGCCCCGGG < 41bp 1 0.365754958452941 1 0.0925420224666595 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP28 ENSG00000196867 CDS Human protein_coding chr19:57050446 chr19:57050444 synonymous SNV . 0 19 hm5C_associated_SNPs_14014 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15815 DeepMRMD:1;iRNA_m5C:0.999536712157815 15816 chr19 57050444 57050444 1 + C A rs61730414 57050447 + 57050427 57050467 41 CCGCTCCCGGGTAGAGGCGCCCCCCGCACAAAGCCCCGGGC CCGCTCCCGGGTAGAGGAGCCCCCCGCACAAAGCCCCGGGC < 41bp 1 0.4332068878644 1 0.237851828336716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP28 ENSG00000196867 CDS Human protein_coding chr19:57050447 chr19:57050444 synonymous SNV . 0 18 hm5C_associated_SNPs_14015 0 0 0 0 0 exosome 1 0.500231643921104 1 0.999536712157793 hm5C_site_15816 DeepMRMD:1;iRNA_m5C:0.999536712157793 15817 chr19 57050460 57050460 1 + C T rs532836261 57050446 + 57050426 57050466 41 GCCGCTCCCGGGTAGAGGCGCCCCCCGCACAAAGCCCCGGG GCCGCTCCCGGGTAGAGGCGCCCCCCGCACAAAGTCCCGGG < 41bp 1 0.341444324911597 1 0.0887151956558228 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP28 ENSG00000196867 CDS Human protein_coding chr19:57050446 chr19:57050460 nonsynonymous SNV 0.478 1 35 hm5C_associated_SNPs_14019 0 0 0 0 0 exosome 1 0.500231643921004 1 0.999536712157992 hm5C_site_15817 DeepMRMD:1;iRNA_m5C:0.999536712157992 15818 chr19 57050460 57050460 1 + C T rs532836261 57050447 + 57050427 57050467 41 CCGCTCCCGGGTAGAGGCGCCCCCCGCACAAAGCCCCGGGC CCGCTCCCGGGTAGAGGCGCCCCCCGCACAAAGTCCCGGGC < 41bp 1 0.329824580795786 1 0.12172195315361 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP28 ENSG00000196867 CDS Human protein_coding chr19:57050447 chr19:57050460 nonsynonymous SNV 0.478 1 34 hm5C_associated_SNPs_14020 0 0 0 0 0 exosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_15818 DeepMRMD:1;iRNA_m5C:0.999536712157811 15819 chr19 57702924 57702924 1 + G A rs59940266 57702914 + 57702894 57702934 41 AGGTCTGTAGCCACTGAGGGCCCCGGTCGGGGCCGCTTTGC AGGTCTGTAGCCACTGAGGGCCCCGGTCGGAGCCGCTTTGC < 41bp 1 0.353946585884871 1 0.113900512456894 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control ZNF264 ENSG00000083844 UTR5 Human protein_coding chr19:57702914 chr19:57702924 . . 0 31 hm5C_associated_SNPs_14024 0 0 0 0 0 Nucleus 1 0.500231648661382 1 0.999536702677236 hm5C_site_15819 DeepMRMD:1;iRNA_m5C:0.999536702677236 15820 chr19 57702924 57702924 1 + G A rs59940266 57702915 + 57702895 57702935 41 GGTCTGTAGCCACTGAGGGCCCCGGTCGGGGCCGCTTTGCA GGTCTGTAGCCACTGAGGGCCCCGGTCGGAGCCGCTTTGCA < 41bp 1 0.300754335651345 1 0.721984028816223 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control ZNF264 ENSG00000083844 UTR5 Human protein_coding chr19:57702915 chr19:57702924 . . 0 30 hm5C_associated_SNPs_14025 0 0 0 0 0 Nucleus 1 0.500231643921092 0.556031942367554 0.999536712157815 hm5C_site_15820 DeepMRMD:0.556031942367554;iRNA_m5C:0.999536712157815 15821 chr19 57702924 57702924 1 + G A rs59940266 57702916 + 57702896 57702936 41 GTCTGTAGCCACTGAGGGCCCCGGTCGGGGCCGCTTTGCAG GTCTGTAGCCACTGAGGGCCCCGGTCGGAGCCGCTTTGCAG < 41bp 1 0.434428027364884 1 0.169927030801773 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control ZNF264 ENSG00000083844 UTR5 Human protein_coding chr19:57702916 chr19:57702924 . . 0 29 hm5C_associated_SNPs_14026 0 0 0 0 0 Nucleus 1 0.500231648707404 1 0.999536702585192 hm5C_site_15821 DeepMRMD:1;iRNA_m5C:0.999536702585192 15822 chr19 57702924 57702924 1 + G A rs59940266 57702917 + 57702897 57702937 41 TCTGTAGCCACTGAGGGCCCCGGTCGGGGCCGCTTTGCAGG TCTGTAGCCACTGAGGGCCCCGGTCGGAGCCGCTTTGCAGG < 41bp 1 0.240467766769252 1 0.773579597473145 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control ZNF264 ENSG00000083844 UTR5 Human protein_coding chr19:57702917 chr19:57702924 . . 0 28 hm5C_associated_SNPs_14027 0 0 0 0 0 Nucleus 1 0.500231643921092 0.45284080505371 0.999536712157815 hm5C_site_15822 DeepMRMD:0.45284080505371;iRNA_m5C:0.999536712157815 15823 chr19 57901291 57901291 1 + G A rs115744302 57901295 + 57901275 57901315 41 ACCAACTTCGGCCTATGGCTCTGTCTGACGTCACCGAAGTG ACCAACTTCGGCCTATAGCTCTGTCTGACGTCACCGAAGTG < 41bp 1 0.183339533052519 1 0.0753061473369598 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF548 ENSG00000188785;ENSG00000269533 UTR5 Human other chr19:57901295 chr19:57901291 . . 0 17 hm5C_associated_SNPs_14028 0 0 1 0 0 Nucleus 1 0.500231627460647 1 0.999536745078707 hm5C_site_15823 DeepMRMD:1;iRNA_m5C:0.999536745078707 15824 chr19 58258231 58258231 1 + G A rs139282139 58258227 + 58258207 58258247 41 GTGTATTTTCCAGTGAGAGACCGCGGAGTGTTGGGTCGTGT GTGTATTTTCCAGTGAGAGACCGCAGAGTGTTGGGTCGTGT < 41bp 1 0.223738714990917 1 0.379572421312332 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF776 ENSG00000152443 UTR5 Human protein_coding chr19:58258227 chr19:58258231 . . 0 25 hm5C_associated_SNPs_14029 0 0 1 0 0 chromatin 1 0.500233389719946 1 0.999533220560108 hm5C_site_15824 DeepMRMD:1;iRNA_m5C:0.999533220560108 15825 chr19 58352459 58352459 1 + G C rs199923915 58352451 + 58352431 58352471 41 ATGACAGTGGAAACTTTCATCAGCACCAGAATGAGCACATT ATGACAGTGGAAACTTTCATCAGCACCACAATGAGCACATT < 41bp 1 0.695152453661335 1 0.839532673358917 experiment 0.609695092677329 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF587B ENSG00000269343 CDS Human protein_coding chr19:58352451 chr19:58352459 nonsynonymous SNV 0.007 1 29 hm5C_associated_SNPs_14030 0 0 0 0 1 cytosol 1 0.500231643917156 0.320934653282166 0.999536712165688 hm5C_site_15825 DeepMRMD:0.320934653282166;iRNA_m5C:0.999536712165688 15826 chr19 58357166 58357166 1 + G A rs528213171 58357147 + 58357127 58357167 41 TTCCCAGCACTTTGGGAGGCCAGATTCCTTGAGACCAGTGT TTCCCAGCACTTTGGGAGGCCAGATTCCTTGAGACCAGTAT < 41bp 1 0.415746546561329 1 0.413306444883347 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF587B ENSG00000269343 UTR3 Human protein_coding chr19:58357147 chr19:58357166 . . 0 40 hm5C_associated_SNPs_14031 0 0 1 0 0 cytosol 1 0.500230946729123 1 0.999538106541755 hm5C_site_15826 DeepMRMD:1;iRNA_m5C:0.999538106541755 15827 chr19 58361243 58361243 1 + C G rs114721771 58361263 + 58361243 58361283 41 CGGCGATGCGGGTGTTTCCCCAGTTTGTGGCCCCTGAGTGC GGGCGATGCGGGTGTTTCCCCAGTTTGTGGCCCCTGAGTGC < 41bp 1 0.346774464326569 1 0.741768836975098 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF587 ENSG00000198466 UTR5 Human protein_coding chr19:58361263 chr19:58361243 . . 0 1 hm5C_associated_SNPs_14032 0 0 1 0 0 Nucleus 1 0.500231640902416 0.516462326049804 0.999536718195168 hm5C_site_15827 DeepMRMD:0.516462326049804;iRNA_m5C:0.999536718195168 15828 chr19 58361264 58361264 1 + A G rs551137689 58361263 + 58361243 58361283 41 CGGCGATGCGGGTGTTTCCCCAGTTTGTGGCCCCTGAGTGC CGGCGATGCGGGTGTTTCCCCGGTTTGTGGCCCCTGAGTGC < 41bp 1 0.370194080503188 1 0.740800797939301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF587 ENSG00000198466 UTR5 Human protein_coding chr19:58361263 chr19:58361264 . . 0 22 hm5C_associated_SNPs_14033 0 0 1 0 0 Nucleus 1 0.500231643909328 0.518398404121398 0.999536712181345 hm5C_site_15828 DeepMRMD:0.518398404121398;iRNA_m5C:0.999536712181345 15829 chr19 58361277 58361277 1 + T A rs150767167 58361263 + 58361243 58361283 41 CGGCGATGCGGGTGTTTCCCCAGTTTGTGGCCCCTGAGTGC CGGCGATGCGGGTGTTTCCCCAGTTTGTGGCCCCAGAGTGC < 41bp 1 0.285313965136289 1 0.383722424507141 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF587 ENSG00000198466 UTR5 Human protein_coding chr19:58361263 chr19:58361277 . . 0 35 hm5C_associated_SNPs_14034 0 0 1 0 0 Nucleus 1 0.50023164559928 1 0.99953670880144 hm5C_site_15829 DeepMRMD:1;iRNA_m5C:0.99953670880144 15830 chr19 58374754 58374754 1 + A G rs138443877 58374735 + 58374715 58374755 41 ACCTCGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGAA ACCTCGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGA < 41bp 1 0.564433293559896 1 0.382379114627838 experiment 0.871133412880209 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZNF587 ENSG00000198466 UTR3 Human protein_coding chr19:58374735 chr19:58374754 . . 0 40 hm5C_associated_SNPs_14035 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15830 DeepMRMD:1;iRNA_m5C:0.999536712157815 15831 chr19 58374754 58374754 1 + A G rs138443877 58374738 + 58374718 58374758 41 TCGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTA TCGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTA < 41bp 1 0.0478749260011572 1 0.0849524140357971 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZNF587 ENSG00000198466 UTR3 Human protein_coding chr19:58374738 chr19:58374754 . . 0 37 hm5C_associated_SNPs_14036 0 0 0 0 0 Nucleus 1 0.500231643914944 1 0.999536712170112 hm5C_site_15831 DeepMRMD:1;iRNA_m5C:0.999536712170112 15832 chr19 58374754 58374754 1 + A G rs138443877 58374739 + 58374719 58374759 41 CGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTAC CGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTAC < 41bp 1 0.207497212134866 1 0.0858295857906342 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZNF587 ENSG00000198466 UTR3 Human protein_coding chr19:58374739 chr19:58374754 . . 0 36 hm5C_associated_SNPs_14037 0 0 0 0 0 Nucleus 1 0.500231643921094 1 0.999536712157811 hm5C_site_15832 DeepMRMD:1;iRNA_m5C:0.999536712157811 15833 chr19 58374754 58374754 1 + A G rs138443877 58374741 + 58374721 58374761 41 TGATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTACAG TGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.357243211714066 1 0.0582593083381653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZNF587 ENSG00000198466 UTR3 Human protein_coding chr19:58374741 chr19:58374754 . . 0 34 hm5C_associated_SNPs_14038 0 0 0 0 0 Nucleus 1 0.500231643923605 1 0.999536712152791 hm5C_site_15833 DeepMRMD:1;iRNA_m5C:0.999536712152791 15834 chr19 58374754 58374754 1 + A G rs138443877 58374742 + 58374722 58374762 41 GATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTACAGG GATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.385435946427043 1 0.323592126369476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZNF587 ENSG00000198466 UTR3 Human protein_coding chr19:58374742 chr19:58374754 . . 0 33 hm5C_associated_SNPs_14039 0 0 0 0 0 Nucleus 1 0.500232050882394 1 0.999535898235213 hm5C_site_15834 DeepMRMD:1;iRNA_m5C:0.999535898235213 15835 chr19 58374754 58374754 1 + A G rs138443877 58374743 + 58374723 58374763 41 ATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTACAGGC ATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGC < 41bp 1 0.526961048021201 1 0.402002066373825 experiment 0.946077903957597 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZNF587 ENSG00000198466 UTR3 Human protein_coding chr19:58374743 chr19:58374754 . . 0 32 hm5C_associated_SNPs_14040 0 0 0 0 0 Nucleus 1 0.500231643998153 1 0.999536712003693 hm5C_site_15835 DeepMRMD:1;iRNA_m5C:0.999536712003693 15836 chr19 58374759 58374759 1 + C T rs142848163 58374739 + 58374719 58374759 41 CGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTAC CGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTAT < 41bp 1 0.177794058071527 1 0.153342217206955 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZNF587 ENSG00000198466 UTR3 Human protein_coding chr19:58374739 chr19:58374759 . . 0 41 hm5C_associated_SNPs_14041 0 0 0 0 0 Nucleus 1 0.500231643922606 1 0.999536712154788 hm5C_site_15836 DeepMRMD:1;iRNA_m5C:0.999536712154788 15837 chr19 58374759 58374759 1 + C T rs142848163 58374741 + 58374721 58374761 41 TGATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTACAG TGATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTATAG < 41bp 1 0.325010901221829 1 0.0745135843753815 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZNF587 ENSG00000198466 UTR3 Human protein_coding chr19:58374741 chr19:58374759 . . 0 39 hm5C_associated_SNPs_14042 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_15837 DeepMRMD:1;iRNA_m5C:0.999536712157815 15838 chr19 58374759 58374759 1 + C T rs142848163 58374742 + 58374722 58374762 41 GATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTACAGG GATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTATAGG < 41bp 1 0.337905298977059 1 0.413530558347702 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZNF587 ENSG00000198466 UTR3 Human protein_coding chr19:58374742 chr19:58374759 . . 0 38 hm5C_associated_SNPs_14043 0 0 0 0 0 Nucleus 1 0.500243023172833 1 0.999513953654334 hm5C_site_15838 DeepMRMD:1;iRNA_m5C:0.999513953654334 15839 chr19 58374759 58374759 1 + C T rs142848163 58374743 + 58374723 58374763 41 ATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTACAGGC ATCCACCCACCTCGGCCTCCCAAAGTGCTGGAATTATAGGC < 41bp 1 0.46992723565835 1 0.421555429697037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZNF587 ENSG00000198466 UTR3 Human protein_coding chr19:58374743 chr19:58374759 . . 0 37 hm5C_associated_SNPs_14044 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_15839 DeepMRMD:1;iRNA_m5C:0.999536712157814 15840 chr19 58757770 58757770 1 + C T rs150558952 58757778 + 58757758 58757798 41 TGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGTAAG TGACACTGGAGATCTGGGAGCATATTGTCTCCCTGGGTAAG < 41bp 1 0.2131730965476 1 0.0533583164215088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58757778 chr19:58757770 nonsynonymous SNV 0.772 1 13 hm5C_associated_SNPs_14046 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_15840 DeepMRMD:1;iRNA_m5C:0.999536712157816 15841 chr19 58865857 58865857 1 + G C rs1451 58865869 + 58865849 58865889 41 GTGAGAAGGAGCAGAGGAGACCAGGAGTTGAGGCGACTGCA GTGAGAAGCAGCAGAGGAGACCAGGAGTTGAGGCGACTGCA < 41bp 1 0.533500847456824 1 0.714808821678162 experiment 0.932998305086352 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control A1BG-AS1 ENSG00000268895 ncRNA_exonic Human antisense chr19:58865869 chr19:58865857 . . 0 9 hm5C_associated_SNPs_14047 0 0 0 0 0 unknown 1 0.500231643979791 0.570382356643676 0.999536712040417 hm5C_site_15841 DeepMRMD:0.570382356643676;iRNA_m5C:0.999536712040417 15842 chr19 58898650 58898650 1 + A G rs114515295 58898657 + 58898637 58898677 41 TCTTCCTGTCTGTACCAGGGCGGCGCGTGGTCTACGCCGAG TCTTCCTGTCTGTGCCAGGGCGGCGCGTGGTCTACGCCGAG < 41bp 1 0.669901732132177 1 0.559240281581879 experiment 0.660196535735646 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS5 ENSG00000083845 UTR5 Human protein_coding chr19:58898657 chr19:58898650 . . 0 14 hm5C_associated_SNPs_14049 0 0 1 0 1 Ribosome 1 0.500383481242032 0.881519436836242 0.999233037515937 hm5C_site_15842 DeepMRMD:0.881519436836242;iRNA_m5C:0.999233037515937 15843 chr19 58898674 58898674 1 + C T rs111590146 58898657 + 58898637 58898677 41 TCTTCCTGTCTGTACCAGGGCGGCGCGTGGTCTACGCCGAG TCTTCCTGTCTGTACCAGGGCGGCGCGTGGTCTACGCTGAG < 41bp 1 0.545678320906794 1 0.444034069776535 experiment 0.908643358186412 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS5 ENSG00000083845 UTR5 Human protein_coding chr19:58898657 chr19:58898674 . . 0 38 hm5C_associated_SNPs_14050 0 0 1 0 1 Ribosome 1 0.500444999538541 1 0.999110000922917 hm5C_site_15843 DeepMRMD:1;iRNA_m5C:0.999110000922917 15844 chr19 58906084 58906084 1 + C T rs144955468 58906069 + 58906049 58906089 41 GGCTCCTCGAACTCCTATGCCATTAAGAAGAAGGACGAGCT GGCTCCTCGAACTCCTATGCCATTAAGAAGAAGGATGAGCT < 41bp 1 0.186323719851103 1 0.102852433919907 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906069 chr19:58906084 synonymous SNV . 0 36 hm5C_associated_SNPs_14051 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15844 DeepMRMD:1;iRNA_m5C:0.999536712157815 15845 chr19 58906084 58906084 1 + C T rs144955468 58906094 + 58906074 58906114 41 AGAAGAAGGACGAGCTGGAGCGTGTGGCCAAGTCCAACCGC AGAAGAAGGATGAGCTGGAGCGTGTGGCCAAGTCCAACCGC < 41bp 1 0.677225067046376 1 0.333525657653809 experiment 0.645549865907247 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906094 chr19:58906084 synonymous SNV . 0 11 hm5C_associated_SNPs_14052 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_15845 DeepMRMD:1;iRNA_m5C:0.999536712157814 15846 chr19 58906084 58906084 1 + C T rs144955468 58906102 + 58906082 58906122 41 GACGAGCTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTC GATGAGCTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTC < 41bp 1 0.675307674895084 1 0.499453186988831 experiment 0.649384650209831 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906102 chr19:58906084 synonymous SNV . 0 3 hm5C_associated_SNPs_14053 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15846 DeepMRMD:1;iRNA_m5C:0.999536712157815 15847 chr19 58992120 58992120 1 + G A rs200530035 58992108 + 58992088 58992128 41 CCATGAGCAGCCAGACAGCACAGTCCCTCGGGGCCTCGGTG CCATGAGCAGCCAGACAGCACAGTCCCTCGGGACCTCGGTG < 41bp 1 0.366985863221544 1 0.199589997529984 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF446 ENSG00000083807;ENSG00000083838 UTR3 Human other chr19:58992108 chr19:58992120 . . 0 33 hm5C_associated_SNPs_14054 0 0 0 0 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15847 DeepMRMD:1;iRNA_m5C:0.999536712157815 15848 chr19 59055857 59055857 1 + G A rs149761075 59055838 + 59055818 59055858 41 CGGCTCTTTCTGCGAGCGGGCGCGCGGGCGAGCGGTTGTGC CGGCTCTTTCTGCGAGCGGGCGCGCGGGCGAGCGGTTGTAC < 41bp 1 0.301597783534586 1 0.819216430187225 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM28 ENSG00000130726 UTR5 Human protein_coding chr19:59055838 chr19:59055857 . . 0 40 hm5C_associated_SNPs_14055 0 0 1 0 0 Cytosol 1 0.50023164392104 0.36156713962555 0.999536712157919 hm5C_site_15848 DeepMRMD:0.36156713962555;iRNA_m5C:0.999536712157919 15849 chr19 59061961 59061961 1 + C T rs201545775 59061965 + 59061945 59061985 41 AGCCTGGCTCTGTTCTCTGTCCTGTCACCCCATCCCCACTC AGCCTGGCTCTGTTCTTTGTCCTGTCACCCCATCCCCACTC < 41bp 1 0.278092793837795 1 0.133128941059113 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 UTR3 Human protein_coding chr19:59061965 chr19:59061961 . . 0 17 hm5C_associated_SNPs_14056 0 0 1 1 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15849 DeepMRMD:1;iRNA_m5C:0.999536712157815 15850 chr19 59080325 59080325 1 + C T rs73068329 59080345 + 59080325 59080365 41 CCAGGAGGCCATCCAGGATACCAGGACTGGGAGAGAATGTG TCAGGAGGCCATCCAGGATACCAGGACTGGGAGAGAATGTG < 41bp 1 0.436360951815928 1 0.143647938966751 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MZF1-AS1 ENSG00000267858 ncRNA_exonic Human antisense chr19:59080345 chr19:59080325 . . 0 1 hm5C_associated_SNPs_14057 0 0 0 0 2 unknown 1 0.500231643921095 1 0.999536712157811 hm5C_site_15850 DeepMRMD:1;iRNA_m5C:0.999536712157811 15851 chr19 59094136 59094136 1 + A G rs8106379 59094134 + 59094114 59094154 41 CAGACGCTTCCATGAACTCTCAAGTGTGACTTATTACAGCC CAGACGCTTCCATGAACTCTCAGGTGTGACTTATTACAGCC < 41bp 1 0.638488316068591 1 0.694903194904327 experiment 0.723023367862817 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPBD1P1 ENSG00000213753 ncRNA_exonic Human transcribed_processed_pseudogene chr19:59094134 chr19:59094136 . . 0 23 hm5C_associated_SNPs_14058 0 0 1 1 0 unknown 1 0.500231630076609 0.610193610191346 0.999536739846781 hm5C_site_15851 DeepMRMD:0.610193610191346;iRNA_m5C:0.999536739846781 15852 chr19 59095038 59095038 1 + A G rs556997402 59095020 + 59095000 59095040 41 CTGTCTCCAGCTGTAGGGCCCTGCCAGGAAGCCTCTATATG CTGTCTCCAGCTGTAGGGCCCTGCCAGGAAGCCTCTATGTG < 41bp 1 0.261849707051889 1 0.0462242662906647 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CENPBD1P1 ENSG00000213753 ncRNA_exonic Human transcribed_processed_pseudogene chr19:59095020 chr19:59095038 . . 0 39 hm5C_associated_SNPs_14059 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15852 DeepMRMD:1;iRNA_m5C:0.999536712157815 15853 chr19 59102866 59102866 1 + A T rs528025900 59102868 + 59102848 59102888 41 CAGAGCTTTGTTCTCAGGACCCACCCGAGGATGGGTCACCA CAGAGCTTTGTTCTCAGGTCCCACCCGAGGATGGGTCACCA < 41bp 1 0.0211307141575499 1 0.107530772686005 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPBD1P1;NONE ENSG00000213753 ncRNA_exonic Human transcribed_processed_pseudogene chr19:59102868 chr19:59102866 . . 0 19 hm5C_associated_SNPs_14060 0 0 0 0 1 unknown 1 0.500867167520879 1 0.998265664958241 hm5C_site_15853 DeepMRMD:1;iRNA_m5C:0.998265664958241 15854 chr19 59102874 59102874 1 + G A rs201252898 59102868 + 59102848 59102888 41 CAGAGCTTTGTTCTCAGGACCCACCCGAGGATGGGTCACCA CAGAGCTTTGTTCTCAGGACCCACCCAAGGATGGGTCACCA < 41bp 1 0.0250028513668165 1 0.0569269955158234 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPBD1P1;NONE ENSG00000213753 ncRNA_exonic Human transcribed_processed_pseudogene chr19:59102868 chr19:59102874 . . 0 27 hm5C_associated_SNPs_14061 0 0 0 1 1 unknown 1 0.500231946702989 1 0.999536106594023 hm5C_site_15854 DeepMRMD:1;iRNA_m5C:0.999536106594023 15855 chr19 59102878 59102878 1 + A G rs80223678 59102868 + 59102848 59102888 41 CAGAGCTTTGTTCTCAGGACCCACCCGAGGATGGGTCACCA CAGAGCTTTGTTCTCAGGACCCACCCGAGGGTGGGTCACCA < 41bp 1 0.0208827262658672 1 0.0699622929096222 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPBD1P1;NONE ENSG00000213753 ncRNA_exonic Human transcribed_processed_pseudogene chr19:59102868 chr19:59102878 . . 0 31 hm5C_associated_SNPs_14062 0 0 0 1 1 unknown 1 0.500231651965466 1 0.999536696069068 hm5C_site_15855 DeepMRMD:1;iRNA_m5C:0.999536696069068 15856 chr20 280661 280661 1 + G C rs566236348 280680 + 280660 280700 41 AGCTACGAACCCTAGAGAAGCAGCTAGCTGGAGCTCATGTG ACCTACGAACCCTAGAGAAGCAGCTAGCTGGAGCTCATGTG < 41bp 1 0.554851350450436 1 0.516776204109192 experiment 0.890297299099128 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZCCHC3 ENSG00000247315 ncRNA_exonic Human protein_coding chr20:280680 chr20:280661 . . 0 2 hm5C_associated_SNPs_14063 0 0 1 0 0 Cytosol 1 0.50023163995112 0.966447591781616 0.999536720097759 hm5C_site_15856 DeepMRMD:0.966447591781616;iRNA_m5C:0.999536720097759 15857 chr20 280671 280671 1 + C A rs14181 280680 + 280660 280700 41 AGCTACGAACCCTAGAGAAGCAGCTAGCTGGAGCTCATGTG AGCTACGAACCATAGAGAAGCAGCTAGCTGGAGCTCATGTG < 41bp 1 0.504686065672892 1 0.501111924648285 experiment 0.990627868654216 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZCCHC3 ENSG00000247315 ncRNA_exonic Human protein_coding chr20:280680 chr20:280671 . . 0 12 hm5C_associated_SNPs_14064 0 0 1 0 0 Cytosol 1 0.500233274128226 0.99777615070343 0.999533451743549 hm5C_site_15857 DeepMRMD:0.99777615070343;iRNA_m5C:0.999533451743549 15858 chr20 307731 307731 1 + C T rs542568611 307750 + 307730 307770 41 GCCCCTCCCCACGTCGCCCCCTCCTGCACAGCCACCAGCAG GTCCCTCCCCACGTCGCCCCCTCCTGCACAGCCACCAGCAG < 41bp 1 0.312094881213955 1 0.715392649173737 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307750 chr20:307731 . . 0 2 hm5C_associated_SNPs_14065 0 0 1 0 0 Ribosome 1 0.500231631477958 0.569214701652526 0.999536737044084 hm5C_site_15858 DeepMRMD:0.569214701652526;iRNA_m5C:0.999536737044084 15859 chr20 307949 307949 1 + C T rs187291670 307962 + 307942 307982 41 CAACGCACGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGA CAACGCATGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGA < 41bp 1 0.114587326360057 1 0.0831024646759033 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307962 chr20:307949 . . 0 8 hm5C_associated_SNPs_14066 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157819 hm5C_site_15859 DeepMRMD:1;iRNA_m5C:0.999536712157819 15860 chr20 307949 307949 1 + C T rs187291670 307963 + 307943 307983 41 AACGCACGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAG AACGCATGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAG < 41bp 1 0.0278763912586277 1 0.153101176023483 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307963 chr20:307949 . . 0 7 hm5C_associated_SNPs_14067 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15860 DeepMRMD:1;iRNA_m5C:0.999536712157815 15861 chr20 307949 307949 1 + C T rs187291670 307964 + 307944 307984 41 ACGCACGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGG ACGCATGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGG < 41bp 1 0.0431591448218544 1 0.0802841782569885 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307964 chr20:307949 . . 0 6 hm5C_associated_SNPs_14068 0 0 1 0 0 Ribosome 1 0.500231643921026 1 0.999536712157948 hm5C_site_15861 DeepMRMD:1;iRNA_m5C:0.999536712157948 15862 chr20 307949 307949 1 + C T rs187291670 307965 + 307945 307985 41 CGCACGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGGG CGCATGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGGG < 41bp 1 0.13951975096858 1 0.426798462867737 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307965 chr20:307949 . . 0 5 hm5C_associated_SNPs_14069 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15862 DeepMRMD:1;iRNA_m5C:0.999536712157815 15863 chr20 307949 307949 1 + C T rs187291670 307967 + 307947 307987 41 CACGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGGGGC CATGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGGGGC < 41bp 1 0.0488389897972495 1 0.0569915473461151 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307967 chr20:307949 . . 0 3 hm5C_associated_SNPs_14070 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15863 DeepMRMD:1;iRNA_m5C:0.999536712157815 15864 chr20 307949 307949 1 + C T rs187291670 307968 + 307948 307988 41 ACGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGGGGCG ATGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGGGGCG < 41bp 1 0.0164131358763758 1 0.411944836378098 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307968 chr20:307949 . . 0 2 hm5C_associated_SNPs_14071 0 0 1 0 0 Ribosome 1 0.500231753214756 1 0.999536493570487 hm5C_site_15864 DeepMRMD:1;iRNA_m5C:0.999536493570487 15865 chr20 307949 307949 1 + C T rs187291670 307969 + 307949 307989 41 CGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGGGGCGC TGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGGGGCGC < 41bp 1 0.137816615945581 1 0.154353559017181 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307969 chr20:307949 . . 0 1 hm5C_associated_SNPs_14072 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15865 DeepMRMD:1;iRNA_m5C:0.999536712157815 15866 chr20 307966 307966 1 + T C rs139428694 307962 + 307942 307982 41 CAACGCACGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGA CAACGCACGCGCCTCCTGCGCCCCCCCCTTCCCTGGGGGGA < 41bp 1 0.0792583953651008 1 0.151968985795975 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307962 chr20:307966 . . 0 25 hm5C_associated_SNPs_14073 0 0 1 0 0 Ribosome 1 0.500231643871069 1 0.999536712257862 hm5C_site_15866 DeepMRMD:1;iRNA_m5C:0.999536712257862 15867 chr20 307966 307966 1 + T C rs139428694 307963 + 307943 307983 41 AACGCACGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAG AACGCACGCGCCTCCTGCGCCCCCCCCTTCCCTGGGGGGAG < 41bp 1 0.0620454472980221 1 0.0763765871524811 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307963 chr20:307966 . . 0 24 hm5C_associated_SNPs_14074 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15867 DeepMRMD:1;iRNA_m5C:0.999536712157815 15868 chr20 307966 307966 1 + T C rs139428694 307964 + 307944 307984 41 ACGCACGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGG ACGCACGCGCCTCCTGCGCCCCCCCCTTCCCTGGGGGGAGG < 41bp 1 0.102119420179405 1 0.072459489107132 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307964 chr20:307966 . . 0 23 hm5C_associated_SNPs_14075 0 0 1 0 0 Ribosome 1 0.500231644184525 1 0.99953671163095 hm5C_site_15868 DeepMRMD:1;iRNA_m5C:0.99953671163095 15869 chr20 307966 307966 1 + T C rs139428694 307965 + 307945 307985 41 CGCACGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGGG CGCACGCGCCTCCTGCGCCCCCCCCTTCCCTGGGGGGAGGG < 41bp 1 0.0694425992321635 1 0.0720347166061401 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307965 chr20:307966 . . 0 22 hm5C_associated_SNPs_14076 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15869 DeepMRMD:1;iRNA_m5C:0.999536712157815 15870 chr20 307966 307966 1 + T C rs139428694 307967 + 307947 307987 41 CACGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGGGGC CACGCGCCTCCTGCGCCCCCCCCTTCCCTGGGGGGAGGGGC < 41bp 1 0.0311132352096681 1 0.0749739110469818 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307967 chr20:307966 . . 0 20 hm5C_associated_SNPs_14077 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15870 DeepMRMD:1;iRNA_m5C:0.999536712157815 15871 chr20 307966 307966 1 + T C rs139428694 307968 + 307948 307988 41 ACGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGGGGCG ACGCGCCTCCTGCGCCCCCCCCTTCCCTGGGGGGAGGGGCG < 41bp 1 0.0180053709083699 1 0.439502745866776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307968 chr20:307966 . . 0 19 hm5C_associated_SNPs_14078 0 0 1 0 0 Ribosome 1 0.500231644858 1 0.999536710284001 hm5C_site_15871 DeepMRMD:1;iRNA_m5C:0.999536710284001 15872 chr20 307966 307966 1 + T C rs139428694 307969 + 307949 307989 41 CGCGCCTCCTGCGCCCCTCCCTTCCCTGGGGGGAGGGGCGC CGCGCCTCCTGCGCCCCCCCCTTCCCTGGGGGGAGGGGCGC < 41bp 1 0.108187815370648 1 0.228245884180069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307969 chr20:307966 . . 0 18 hm5C_associated_SNPs_14079 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15872 DeepMRMD:1;iRNA_m5C:0.999536712157815 15873 chr20 330408 330408 1 + C G rs11556643 330392 + 330372 330412 41 CTGCACCTCTTCTATGAGGACTGTGCAGGCACTGCTCTCAG CTGCACCTCTTCTATGAGGACTGTGCAGGCACTGCTGTCAG < 41bp 1 0.37243549752329 1 0.0443779826164246 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330392 chr20:330408 nonsynonymous SNV 0.046 2 37 hm5C_associated_SNPs_14080 0 0 1 0 1 cytosol 1 0.500231652166292 1 0.999536695667416 hm5C_site_15873 DeepMRMD:1;iRNA_m5C:0.999536695667416 15874 chr20 368883 368883 1 + G A rs61740293 368903 + 368883 368923 41 GAGGAGGGCGGGCGGGCCTACCAGGCCCTGCACTGCCCTAC AAGGAGGGCGGGCGGGCCTACCAGGCCCTGCACTGCCCTAC < 41bp 1 0.697590299975518 1 0.778970837593079 experiment 0.604819400048964 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIB3 ENSG00000101255 CDS Human protein_coding chr20:368903 chr20:368883 nonsynonymous SNV 0.029 0 1 hm5C_associated_SNPs_14081 0 0 1 0 1 Ribosome 1 0.500231643920005 0.442058324813842 0.99953671215999 hm5C_site_15874 DeepMRMD:0.442058324813842;iRNA_m5C:0.99953671215999 15875 chr20 1145000 1145000 1 + C A rs114332593 1145015 + 1144995 1145035 41 GAGATCTGGCTTCCCAAGAGCACTTATTGACCCTTCCTCAG GAGATATGGCTTCCCAAGAGCACTTATTGACCCTTCCTCAG < 41bp 1 0.371970422825821 1 0.0315294861793518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1145015 chr20:1145000 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_14082 0 0 1 0 1 Ribosome 1 0.50023239982423 1 0.999535200351539 hm5C_site_15875 DeepMRMD:1;iRNA_m5C:0.999535200351539 15876 chr20 1286593 1286593 1 + G C rs187514023 1286602 + 1286582 1286622 41 ATCAGCTCCCTGCTGCGGGGCTGCTGCACTGTGGCCTTGCA ATCAGCTCCCTCCTGCGGGGCTGCTGCACTGTGGCCTTGCA < 41bp 1 0.145921526067813 1 0.0814515352249146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNPH ENSG00000101298 CDS Human protein_coding chr20:1286602 chr20:1286593 synonymous SNV . 0 12 hm5C_associated_SNPs_14083 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_15876 DeepMRMD:1;iRNA_m5C:0.999536712157815 15877 chr20 1905432 1905432 1 + G A rs191734008 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGAGAACACTGGATCTAATGAACGAAACATCTATA < 41bp 1 0.168490322406045 1 0.0549083054065704 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905432 synonymous SNV . 0 31 hm5C_associated_SNPs_14085 0 0 0 0 2 Nucleus 1 0.500231643981992 1 0.999536712036016 hm5C_site_15877 DeepMRMD:1;iRNA_m5C:0.999536712036016 15878 chr20 1919345 1919345 1 + C T rs374508173 1919354 + 1919334 1919374 41 AGTGCAGCCTTCTGTGACCCCGCTGTGGTAAGTCCAGCCTG AGTGCAGCCTTTTGTGACCCCGCTGTGGTAAGTCCAGCCTG < 41bp 1 0.67825767723604 1 0.709807991981506 experiment 0.643484645527919 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SIRPA ENSG00000198053 UTR3 Human protein_coding chr20:1919354 chr20:1919345 . . 0 12 hm5C_associated_SNPs_14086 0 0 0 0 0 Nucleus 1 0.50023077288127 0.580384016036988 0.99953845423746 hm5C_site_15878 DeepMRMD:0.580384016036988;iRNA_m5C:0.99953845423746 15879 chr20 2125793 2125793 1 + C G rs73074252 2125808 + 2125788 2125828 41 CACCTCCCTAGGGGAAGCTTCCCTCCCCCTGGGCTGCTGCT CACCTGCCTAGGGGAAGCTTCCCTCCCCCTGGGCTGCTGCT < 41bp 1 0.0279499859883725 1 0.0249592363834381 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control STK35 ENSG00000125834 UTR3 Human protein_coding chr20:2125808 chr20:2125793 . . 0 6 hm5C_associated_SNPs_14088 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15879 DeepMRMD:1;iRNA_m5C:0.999536712157815 15880 chr20 2128405 2128405 1 + G A rs191490864 2128396 + 2128376 2128416 41 TCCCTCCTAGGCCTGTCTGGCAGCCCCCAGACAGACGTAGC TCCCTCCTAGGCCTGTCTGGCAGCCCCCAAACAGACGTAGC < 41bp 1 0.409180688084649 1 0.51375812292099 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STK35 ENSG00000125834 UTR3 Human protein_coding chr20:2128396 chr20:2128405 . . 0 30 hm5C_associated_SNPs_14089 0 0 1 0 0 Ribosome 1 0.500231643921092 0.97248375415802 0.999536712157815 hm5C_site_15880 DeepMRMD:0.97248375415802;iRNA_m5C:0.999536712157815 15881 chr20 2128405 2128405 1 + G A rs191490864 2128399 + 2128379 2128419 41 CTCCTAGGCCTGTCTGGCAGCCCCCAGACAGACGTAGCTCC CTCCTAGGCCTGTCTGGCAGCCCCCAAACAGACGTAGCTCC < 41bp 1 0.226458831052349 1 0.255340486764908 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STK35 ENSG00000125834 UTR3 Human protein_coding chr20:2128399 chr20:2128405 . . 0 27 hm5C_associated_SNPs_14090 0 0 1 0 0 Ribosome 1 0.500231643788496 1 0.999536712423007 hm5C_site_15881 DeepMRMD:1;iRNA_m5C:0.999536712423007 15882 chr20 2633466 2633466 1 + C G rs73576045 2633479 + 2633459 2633499 41 TGACGCTCGCGCCCCGGCTCCCGTTCCAGGTGCTGTTGCAC TGACGCTGGCGCCCCGGCTCCCGTTCCAGGTGCTGTTGCAC < 41bp 1 0.0417188407827827 1 0.0981684923171997 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MIR1292 ENSG00000221062 ncRNA_exonic Human other chr20:2633479 chr20:2633466 . . 0 8 hm5C_associated_SNPs_14091 0 0 1 0 0 unknown 1 0.500274521416806 1 0.999450957166387 hm5C_site_15882 DeepMRMD:1;iRNA_m5C:0.999450957166387 15883 chr20 2633466 2633466 1 + C G rs73576045 2633484 + 2633464 2633504 41 CTCGCGCCCCGGCTCCCGTTCCAGGTGCTGTTGCACGTGCT CTGGCGCCCCGGCTCCCGTTCCAGGTGCTGTTGCACGTGCT < 41bp 1 0.23314754708285 1 0.707959413528442 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MIR1292 ENSG00000221062 ncRNA_exonic Human other chr20:2633484 chr20:2633466 . . 0 3 hm5C_associated_SNPs_14092 0 0 1 0 0 unknown 1 0.500231643921092 0.584081172943116 0.999536712157815 hm5C_site_15883 DeepMRMD:0.584081172943116;iRNA_m5C:0.999536712157815 15884 chr20 2634861 2634861 1 + C T rs561345024 2634870 + 2634850 2634890 41 GCCAGGCTTTGCAGTGATGACTTGCGAATCAAATCTGTCAA GCCAGGCTTTGTAGTGATGACTTGCGAATCAAATCTGTCAA < 41bp 1 0.232966008370669 1 0.0966017842292786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD110 ENSG00000221116 ncRNA_exonic Human snoRNA chr20:2634870 chr20:2634861 . . 0 12 hm5C_associated_SNPs_14093 0 0 1 0 0 unknown 1 0.500231639169148 1 0.999536721661704 hm5C_site_15884 DeepMRMD:1;iRNA_m5C:0.999536721661704 15885 chr20 2634919 2634919 1 + A C rs73611742 2634915 + 2634895 2634935 41 CTGAGTGCAATCACTGATGTCTCCATGTCTCTGAGCAATGC CTGAGTGCAATCACTGATGTCTCCCTGTCTCTGAGCAATGC < 41bp 1 0.207973333839903 1 0.0352165400981903 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD110 ENSG00000221116 ncRNA_exonic Human snoRNA chr20:2634915 chr20:2634919 . . 0 25 hm5C_associated_SNPs_14094 0 0 1 0 0 unknown 1 0.500233167942931 1 0.999533664114137 hm5C_site_15885 DeepMRMD:1;iRNA_m5C:0.999533664114137 15886 chr20 2634919 2634919 1 + A C rs73611742 2634925 + 2634905 2634945 41 TCACTGATGTCTCCATGTCTCTGAGCAATGCCTGATGGGGA TCACTGATGTCTCCCTGTCTCTGAGCAATGCCTGATGGGGA < 41bp 1 0.535908483254696 1 0.527534484863281 experiment 0.928183033490607 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD110 ENSG00000221116 ncRNA_exonic Human snoRNA chr20:2634925 chr20:2634919 . . 0 15 hm5C_associated_SNPs_14095 0 0 1 0 0 unknown 1 0.500231665958836 0.944931030273438 0.999536668082328 hm5C_site_15886 DeepMRMD:0.944931030273438;iRNA_m5C:0.999536668082328 15887 chr20 2635157 2635157 1 + C T rs144743768 2635143 + 2635123 2635163 41 TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCTGCAATA < 41bp 1 0.562838780093158 1 0.183098644018173 experiment 0.874322439813684 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635143 chr20:2635157 synonymous SNV . 0 35 hm5C_associated_SNPs_14096 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_15887 DeepMRMD:1;iRNA_m5C:0.999536712157815 15888 chr20 2635763 2635763 1 + A G rs577907502 2635780 + 2635760 2635800 41 GAAAGAGGAGGTAGAGTAAACCTACCCCATATACACCTCAG GAAGGAGGAGGTAGAGTAAACCTACCCCATATACACCTCAG < 41bp 1 0.0606804035455217 1 0.263124048709869 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA51 ENSG00000271798 ncRNA_exonic Human snoRNA chr20:2635780 chr20:2635763 . . 0 4 hm5C_associated_SNPs_14097 0 0 1 0 0 unknown 1 0.50023164389374 1 0.999536712212521 hm5C_site_15888 DeepMRMD:1;iRNA_m5C:0.999536712212521 15889 chr20 2636749 2636749 1 + G A rs140275178 2636757 + 2636737 2636777 41 TTGGGGGATCACGGTGATGGCTGACCAGGGCTCCCTGACCT TTGGGGGATCACAGTGATGGCTGACCAGGGCTCCCTGACCT < 41bp 1 0.474401218742988 1 0.0545556545257568 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD86 ENSG00000212498 ncRNA_exonic Human snoRNA chr20:2636757 chr20:2636749 . . 0 13 hm5C_associated_SNPs_14098 0 0 1 1 0 unknown 1 0.50023164386122 1 0.999536712277559 hm5C_site_15889 DeepMRMD:1;iRNA_m5C:0.999536712277559 15890 chr20 2636749 2636749 1 + G A rs140275178 2636761 + 2636741 2636781 41 GGGATCACGGTGATGGCTGACCAGGGCTCCCTGACCTATAC GGGATCACAGTGATGGCTGACCAGGGCTCCCTGACCTATAC < 41bp 1 0.539664742365829 1 0.502054929733276 experiment 0.920670515268342 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD86 ENSG00000212498 ncRNA_exonic Human snoRNA chr20:2636761 chr20:2636749 . . 0 9 hm5C_associated_SNPs_14099 0 0 1 1 0 unknown 1 0.500231643921074 0.995890140533448 0.999536712157852 hm5C_site_15890 DeepMRMD:0.995890140533448;iRNA_m5C:0.999536712157852 15891 chr20 2732359 2732359 1 + C T rs575938475 2732361 + 2732341 2732381 41 CCCAGCTCTGAACGAGCCCACCATTGACTACGGATTCCAGA CCCAGCTCTGAACGAGCCTACCATTGACTACGGATTCCAGA < 41bp 1 0.0255276115304796 1 0.101852744817734 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EBF4 ENSG00000088881 CDS Human protein_coding chr20:2732361 chr20:2732359 synonymous SNV . 0 19 hm5C_associated_SNPs_14100 0 0 0 0 2 exosome 1 0.500231643917914 1 0.999536712164172 hm5C_site_15891 DeepMRMD:1;iRNA_m5C:0.999536712164172 15892 chr20 2843961 2843961 1 + C T rs78044640 2843957 + 2843937 2843977 41 CTCGTGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG CTCGTGTTGCGGAGACTTTACCCCTTGGCCATCCAGATATG < 41bp 1 0.349780970977544 1 0.0749313533306122 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843957 chr20:2843961 synonymous SNV . 0 25 hm5C_associated_SNPs_14101 0 0 1 0 1 chromatin 1 0.500231643921122 1 0.999536712157755 hm5C_site_15892 DeepMRMD:1;iRNA_m5C:0.999536712157755 15893 chr20 2846052 2846052 1 + T C rs61729229 2846046 + 2846026 2846066 41 AAGCCCAGCTTTCCTGCAGGCTCTGGTGGCTGAAGCTGACT AAGCCCAGCTTTCCTGCAGGCTCTGGCGGCTGAAGCTGACT < 41bp 1 0.183007882665335 1 0.0580622553825378 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846046 chr20:2846052 nonsynonymous SNV 0.998 4 27 hm5C_associated_SNPs_14102 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_15893 DeepMRMD:1;iRNA_m5C:0.999536712157815 15894 chr20 3629788 3629788 1 + C G rs442753 3629802 + 3629782 3629822 41 AGCTTTCTCCGGCCTCAGGGCAGAAAAAGGGAATGGCAGGG AGCTTTGTCCGGCCTCAGGGCAGAAAAAGGGAATGGCAGGG < 41bp 1 0.590822457274106 1 0.519295275211334 experiment 0.818355085451788 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATRN ENSG00000088812 UTR3 Human protein_coding chr20:3629802 chr20:3629788 . . 0 7 hm5C_associated_SNPs_14103 0 0 1 0 0 Ribosome 1 0.500231643921092 0.961409449577332 0.999536712157815 hm5C_site_15894 DeepMRMD:0.961409449577332;iRNA_m5C:0.999536712157815 15895 chr20 3849006 3849006 1 + G A rs138372766 3849019 + 3848999 3849039 41 GGGCCGAGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTT GGGCCGAACGCAGTGGCTCACGCCTGTAATCCCAGCACTTT < 41bp 1 0.465907923663537 1 0.119624614715576 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAVS ENSG00000088888 UTR3 Human protein_coding chr20:3849019 chr20:3849006 . . 0 8 hm5C_associated_SNPs_14105 0 0 0 0 0 Nucleus 1 0.500231644066018 1 0.999536711867964 hm5C_site_15895 DeepMRMD:1;iRNA_m5C:0.999536711867964 15896 chr20 3849006 3849006 1 + G A rs138372766 3849021 + 3849001 3849041 41 GCCGAGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGG GCCGAACGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGG < 41bp 1 0.136490722958793 1 0.0654364228248596 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAVS ENSG00000088888 UTR3 Human protein_coding chr20:3849021 chr20:3849006 . . 0 6 hm5C_associated_SNPs_14106 0 0 0 0 0 Nucleus 1 0.50023164392109 1 0.999536712157819 hm5C_site_15896 DeepMRMD:1;iRNA_m5C:0.999536712157819 15897 chr20 3849006 3849006 1 + G A rs138372766 3849022 + 3849002 3849042 41 CCGAGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGG CCGAACGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGG < 41bp 1 0.304977733463542 1 0.119672030210495 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAVS ENSG00000088888 UTR3 Human protein_coding chr20:3849022 chr20:3849006 . . 0 5 hm5C_associated_SNPs_14107 0 0 0 0 0 Nucleus 1 0.500231643673164 1 0.999536712653673 hm5C_site_15897 DeepMRMD:1;iRNA_m5C:0.999536712653673 15898 chr20 3849021 3849021 1 + C T rs183102846 3849019 + 3848999 3849039 41 GGGCCGAGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTT GGGCCGAGCGCAGTGGCTCACGTCTGTAATCCCAGCACTTT < 41bp 1 0.281231104839789 1 0.180722326040268 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAVS ENSG00000088888 UTR3 Human protein_coding chr20:3849019 chr20:3849021 . . 0 23 hm5C_associated_SNPs_14108 0 0 0 0 0 Nucleus 1 0.500231645686824 1 0.999536708626351 hm5C_site_15898 DeepMRMD:1;iRNA_m5C:0.999536708626351 15899 chr20 3849021 3849021 1 + C T rs183102846 3849022 + 3849002 3849042 41 CCGAGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGG CCGAGCGCAGTGGCTCACGTCTGTAATCCCAGCACTTTGGG < 41bp 1 0.369707098618682 1 0.222223728895187 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAVS ENSG00000088888 UTR3 Human protein_coding chr20:3849022 chr20:3849021 . . 0 20 hm5C_associated_SNPs_14109 0 0 0 0 0 Nucleus 1 0.500231643910709 1 0.999536712178582 hm5C_site_15899 DeepMRMD:1;iRNA_m5C:0.999536712178582 15900 chr20 3849021 3849021 1 + C T rs183102846 3849029 + 3849009 3849049 41 CAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAA CAGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCAA < 41bp 1 0.179077131605417 1 0.311408758163452 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAVS ENSG00000088888 UTR3 Human protein_coding chr20:3849029 chr20:3849021 . . 0 13 hm5C_associated_SNPs_14110 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15900 DeepMRMD:1;iRNA_m5C:0.999536712157815 15901 chr20 3849021 3849021 1 + C T rs183102846 3849030 + 3849010 3849050 41 AGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAG AGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCAAG < 41bp 1 0.0916293835970446 1 0.295140862464905 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAVS ENSG00000088888 UTR3 Human protein_coding chr20:3849030 chr20:3849021 . . 0 12 hm5C_associated_SNPs_14111 0 0 0 0 0 Nucleus 1 0.50023156513836 1 0.99953686972328 hm5C_site_15901 DeepMRMD:1;iRNA_m5C:0.99953686972328 15902 chr20 3849021 3849021 1 + C T rs183102846 3849031 + 3849011 3849051 41 GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGG GTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCAAGG < 41bp 1 0.601261600686477 1 0.573997497558594 experiment 0.797476798627045 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAVS ENSG00000088888 UTR3 Human protein_coding chr20:3849031 chr20:3849021 . . 0 11 hm5C_associated_SNPs_14112 0 0 0 0 0 Nucleus 1 0.500231643910836 0.852005004882812 0.999536712178329 hm5C_site_15902 DeepMRMD:0.852005004882812;iRNA_m5C:0.999536712178329 15903 chr20 3849021 3849021 1 + C T rs183102846 3849034 + 3849014 3849054 41 GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGG GCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGG < 41bp 1 0.189580307215523 1 0.0749271214008331 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAVS ENSG00000088888 UTR3 Human protein_coding chr20:3849034 chr20:3849021 . . 0 8 hm5C_associated_SNPs_14113 0 0 0 0 0 Nucleus 1 0.500231643921094 1 0.999536712157813 hm5C_site_15903 DeepMRMD:1;iRNA_m5C:0.999536712157813 15904 chr20 3849021 3849021 1 + C T rs183102846 3849036 + 3849016 3849056 41 TCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGC TCACGTCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGC < 41bp 1 0.147480662294364 1 0.145834237337112 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAVS ENSG00000088888 UTR3 Human protein_coding chr20:3849036 chr20:3849021 . . 0 6 hm5C_associated_SNPs_14114 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15904 DeepMRMD:1;iRNA_m5C:0.999536712157815 15905 chr20 3849218 3849218 1 + T C rs552988814 3849221 + 3849201 3849241 41 AACCCAGGATGCGGAGGTTGCAGTGAGCCGAGATTGTGCCA AACCCAGGATGCGGAGGCTGCAGTGAGCCGAGATTGTGCCA < 41bp 1 0.588055669653885 1 0.768748044967651 experiment 0.82388866069223 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAVS ENSG00000088888 UTR3 Human protein_coding chr20:3849221 chr20:3849218 . . 0 18 hm5C_associated_SNPs_14115 0 0 1 0 0 Nucleus 1 0.50023164392109 0.462503910064698 0.99953671215782 hm5C_site_15905 DeepMRMD:0.462503910064698;iRNA_m5C:0.99953671215782 15906 chr20 3893159 3893159 1 + T C rs149583615 3893142 + 3893122 3893162 41 TTTTTGGTCTCTGCTGTCTTCTTACTGGCTGTACCACTTTT TTTTTGGTCTCTGCTGTCTTCTTACTGGCTGTACCACCTTT < 41bp 1 0.139819752604035 1 0.0810133814811707 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PANK2 ENSG00000125779 CDS Human protein_coding chr20:3893142 chr20:3893159 synonymous SNV . 0 38 hm5C_associated_SNPs_14116 0 0 1 1 1 Ribosome 1 0.500231699085433 1 0.999536601829134 hm5C_site_15906 DeepMRMD:1;iRNA_m5C:0.999536601829134 15907 chr20 4163326 4163326 1 + A G rs200667541 4163341 + 4163321 4163361 41 TACCCACCTGAGCTCTGGTACCGCAAGATCTGCGGCTTTGA TACCCGCCTGAGCTCTGGTACCGCAAGATCTGCGGCTTTGA < 41bp 1 0.297907143574788 1 0.0732690393924713 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMOX ENSG00000088826 CDS Human protein_coding chr20:4163341 chr20:4163326 synonymous SNV . 0 6 hm5C_associated_SNPs_14117 0 0 1 0 0 Ribosome 1 0.500231643921042 1 0.999536712157916 hm5C_site_15907 DeepMRMD:1;iRNA_m5C:0.999536712157916 15908 chr20 5163049 5163049 1 + A G rs35796695 5163068 + 5163048 5163088 41 TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC TGCTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC < 41bp 1 0.202222885078084 1 0.0609050095081329 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDS2 ENSG00000101290 CDS Human protein_coding chr20:5163068 chr20:5163049 synonymous SNV . 0 2 hm5C_associated_SNPs_14119 0 0 1 0 2 chromatin 1 0.500231629902096 1 0.999536740195808 hm5C_site_15908 DeepMRMD:1;iRNA_m5C:0.999536740195808 15909 chr20 5172842 5172842 1 + G A rs150430322 5172834 + 5172814 5172854 41 CCTCATTTGTCTCTTTTGTCCCATTGTGGGCATATGGTGGG CCTCATTTGTCTCTTTTGTCCCATTGTGAGCATATGGTGGG < 41bp 1 0.0711114133777605 1 0.0660012364387512 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDS2 ENSG00000101290 UTR3 Human protein_coding chr20:5172834 chr20:5172842 . . 0 29 hm5C_associated_SNPs_14120 0 0 1 0 0 chromatin 1 0.500231644262853 1 0.999536711474294 hm5C_site_15909 DeepMRMD:1;iRNA_m5C:0.999536711474294 15910 chr20 5172847 5172847 1 + A C rs189261022 5172834 + 5172814 5172854 41 CCTCATTTGTCTCTTTTGTCCCATTGTGGGCATATGGTGGG CCTCATTTGTCTCTTTTGTCCCATTGTGGGCATCTGGTGGG < 41bp 1 0.0938868959310069 1 0.0520029664039612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDS2 ENSG00000101290 UTR3 Human protein_coding chr20:5172834 chr20:5172847 . . 0 34 hm5C_associated_SNPs_14121 0 0 1 0 0 chromatin 1 0.500231638477964 1 0.999536723044072 hm5C_site_15910 DeepMRMD:1;iRNA_m5C:0.999536723044072 15911 chr20 5174785 5174785 1 + T A rs531414709 5174797 + 5174777 5174817 41 GCTAATACTCAGGCAGAGCCCCGTATTCTTCCCTGACTTGG GCTAATACACAGGCAGAGCCCCGTATTCTTCCCTGACTTGG < 41bp 1 0.404591482272788 1 0.131128787994385 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDS2 ENSG00000101290 UTR3 Human protein_coding chr20:5174797 chr20:5174785 . . 0 9 hm5C_associated_SNPs_14122 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157813 hm5C_site_15911 DeepMRMD:1;iRNA_m5C:0.999536712157813 15912 chr20 5175237 5175237 1 + C A rs732817 5175225 + 5175205 5175245 41 TCACCTGTTTGTATAGGGACCATGTTTCCCAACGCACTTTG TCACCTGTTTGTATAGGGACCATGTTTCCCAAAGCACTTTG < 41bp 1 0.303198583436046 1 0.0812943577766418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDS2 ENSG00000101290 UTR3 Human protein_coding chr20:5175225 chr20:5175237 . . 0 33 hm5C_associated_SNPs_14123 0 0 0 0 0 chromatin 1 0.500231913658095 1 0.999536172683809 hm5C_site_15912 DeepMRMD:1;iRNA_m5C:0.999536172683809 15913 chr20 5931575 5931575 1 + G C rs191935419 5931590 + 5931570 5931610 41 GGGAGGGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCG GGGAGCGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCG < 41bp 1 0.683279674862705 1 0.778488993644714 experiment 0.633440650274589 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCM8 ENSG00000125885 UTR5 Human protein_coding chr20:5931590 chr20:5931575 . . 0 6 hm5C_associated_SNPs_14124 0 0 1 0 1 Ribosome 1 0.500235746792302 0.443022012710572 0.999528506415396 hm5C_site_15913 DeepMRMD:0.443022012710572;iRNA_m5C:0.999528506415396 15914 chr20 5931575 5931575 1 + G C rs191935419 5931595 + 5931575 5931615 41 GGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCGTATCC CGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCGTATCC < 41bp 1 0.384807043539794 1 0.48776850104332 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM8 ENSG00000125885 UTR5 Human protein_coding chr20:5931595 chr20:5931575 . . 0 1 hm5C_associated_SNPs_14125 0 0 1 0 1 Ribosome 1 0.500231643918797 1 0.999536712162405 hm5C_site_15914 DeepMRMD:1;iRNA_m5C:0.999536712162405 15915 chr20 5931577 5931577 1 + A G rs117380724 5931595 + 5931575 5931615 41 GGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCGTATCC GGGGGGAGGGAGAATCCGGCCGGACAGATCTGCGCGTATCC < 41bp 1 0.431200210286709 1 0.533194780349731 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM8 ENSG00000125885 UTR5 Human protein_coding chr20:5931595 chr20:5931577 . . 0 3 hm5C_associated_SNPs_14127 0 0 1 0 1 Ribosome 1 0.500231643921092 0.933610439300538 0.999536712157815 hm5C_site_15915 DeepMRMD:0.933610439300538;iRNA_m5C:0.999536712157815 15916 chr20 5931604 5931604 1 + C G rs371133845 5931590 + 5931570 5931610 41 GGGAGGGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCG GGGAGGGAGGGAGGGAGAATCCGGCCGGACAGATGTGCGCG < 41bp 1 0.678389591481174 1 0.808542490005493 experiment 0.643220817037651 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCM8 ENSG00000125885 UTR5 Human protein_coding chr20:5931590 chr20:5931604 . . 0 35 hm5C_associated_SNPs_14128 0 0 1 0 1 Ribosome 1 0.50023164400898 0.382915019989014 0.999536711982041 hm5C_site_15916 DeepMRMD:0.382915019989014;iRNA_m5C:0.999536711982041 15917 chr20 5931604 5931604 1 + C G rs371133845 5931595 + 5931575 5931615 41 GGAGGGAGGGAGAATCCGGCCGGACAGATCTGCGCGTATCC GGAGGGAGGGAGAATCCGGCCGGACAGATGTGCGCGTATCC < 41bp 1 0.422362774782789 1 0.662009477615356 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM8 ENSG00000125885 UTR5 Human protein_coding chr20:5931595 chr20:5931604 . . 0 30 hm5C_associated_SNPs_14129 0 0 1 0 1 Ribosome 1 0.500231629499163 0.675981044769288 0.999536741001674 hm5C_site_15917 DeepMRMD:0.675981044769288;iRNA_m5C:0.999536741001674 15918 chr20 5932795 5932795 1 + G A rs577098006 5932807 + 5932787 5932827 41 AACCACAGGAAAACGTACTTCTGGTAGGTGAGGTCAATGAT AACCACAGAAAAACGTACTTCTGGTAGGTGAGGTCAATGAT < 41bp 1 0.381454445781477 1 0.349663734436035 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5932807 chr20:5932795 nonsynonymous SNV 0.652 0 9 hm5C_associated_SNPs_14130 0 0 1 0 1 Ribosome 1 0.500231600740211 1 0.999536798519577 hm5C_site_15918 DeepMRMD:1;iRNA_m5C:0.999536798519577 15919 chr20 6749018 6749018 1 + G A rs535084968 6748999 + 6748979 6749019 41 CCCGGCGTCGCCCAGGATGGCTGCCCCGAGCCATGGGCCGC CCCGGCGTCGCCCAGGATGGCTGCCCCGAGCCATGGGCCAC < 41bp 1 0.68756208482641 1 0.0509857833385468 experiment 0.62487583034718 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMP2 ENSG00000125845 UTR5 Human protein_coding chr20:6748999 chr20:6749018 . . 0 40 hm5C_associated_SNPs_14131 0 0 0 0 0 Ribosome 1 0.500223329914058 1 0.999553340171884 hm5C_site_15919 DeepMRMD:1;iRNA_m5C:0.999553340171884 15920 chr20 6749019 6749019 1 + C G rs550120877 6748999 + 6748979 6749019 41 CCCGGCGTCGCCCAGGATGGCTGCCCCGAGCCATGGGCCGC CCCGGCGTCGCCCAGGATGGCTGCCCCGAGCCATGGGCCGG < 41bp 1 0.664946563099118 1 0.0656740069389343 experiment 0.670106873801765 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMP2 ENSG00000125845 UTR5 Human protein_coding chr20:6748999 chr20:6749019 . . 0 41 hm5C_associated_SNPs_14132 0 0 0 0 0 Ribosome 1 0.500231643867539 1 0.999536712264921 hm5C_site_15920 DeepMRMD:1;iRNA_m5C:0.999536712264921 15921 chr20 6749027 6749027 1 + C T rs568626550 6749041 + 6749021 6749061 41 GCGGAGCTAGCGCGGAGCGCCCGACCCTCGACCCCCGAGTC GCGGAGTTAGCGCGGAGCGCCCGACCCTCGACCCCCGAGTC < 41bp 1 0.411964742190461 1 0.353546172380447 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BMP2 ENSG00000125845 UTR5 Human protein_coding chr20:6749041 chr20:6749027 . . 0 7 hm5C_associated_SNPs_14133 0 0 0 0 0 Ribosome 1 0.500231757798938 1 0.999536484402124 hm5C_site_15921 DeepMRMD:1;iRNA_m5C:0.999536484402124 15922 chr20 6749027 6749027 1 + C T rs568626550 6749045 + 6749025 6749065 41 AGCTAGCGCGGAGCGCCCGACCCTCGACCCCCGAGTCCCGG AGTTAGCGCGGAGCGCCCGACCCTCGACCCCCGAGTCCCGG < 41bp 1 0.302813538719303 1 0.398221373558044 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BMP2 ENSG00000125845 UTR5 Human protein_coding chr20:6749045 chr20:6749027 . . 0 3 hm5C_associated_SNPs_14135 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15922 DeepMRMD:1;iRNA_m5C:0.999536712157815 15923 chr20 6749027 6749027 1 + C T rs568626550 6749046 + 6749026 6749066 41 GCTAGCGCGGAGCGCCCGACCCTCGACCCCCGAGTCCCGGA GTTAGCGCGGAGCGCCCGACCCTCGACCCCCGAGTCCCGGA < 41bp 1 0.612703957311883 1 0.268362820148468 experiment 0.774592085376235 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BMP2 ENSG00000125845 UTR5 Human protein_coding chr20:6749046 chr20:6749027 . . 0 2 hm5C_associated_SNPs_14136 0 0 0 0 0 Ribosome 1 0.500232183032531 1 0.999535633934938 hm5C_site_15923 DeepMRMD:1;iRNA_m5C:0.999535633934938 15924 chr20 6749073 6749073 1 + C T rs535209432 6749053 + 6749033 6749073 41 CGGAGCGCCCGACCCTCGACCCCCGAGTCCCGGAGCCGGCC CGGAGCGCCCGACCCTCGACCCCCGAGTCCCGGAGCCGGCT < 41bp 1 0.567651226939338 1 0.124863594770432 experiment 0.864697546121323 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BMP2 ENSG00000125845 UTR5 Human protein_coding chr20:6749053 chr20:6749073 . . 0 41 hm5C_associated_SNPs_14137 0 0 0 0 0 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_15924 DeepMRMD:1;iRNA_m5C:0.999536712157818 15925 chr20 6749073 6749073 1 + C T rs535209432 6749074 + 6749054 6749094 41 CCCGAGTCCCGGAGCCGGCCCCGCGCGGGGCCACGCGTCCC CCCGAGTCCCGGAGCCGGCTCCGCGCGGGGCCACGCGTCCC < 41bp 1 0.695187655024121 1 0.76518702507019 experiment 0.609624689951758 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP2 ENSG00000125845 UTR5 Human protein_coding chr20:6749074 chr20:6749073 . . 0 20 hm5C_associated_SNPs_14138 0 0 0 0 0 Ribosome 1 0.500134230891866 0.46962594985962 0.999731538216267 hm5C_site_15925 DeepMRMD:0.46962594985962;iRNA_m5C:0.999731538216267 15926 chr20 6749073 6749073 1 + C T rs535209432 6749084 + 6749064 6749104 41 GGAGCCGGCCCCGCGCGGGGCCACGCGTCCCTCGGGCGCTG GGAGCCGGCTCCGCGCGGGGCCACGCGTCCCTCGGGCGCTG < 41bp 1 0.489019010504136 1 0.105320990085602 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMP2 ENSG00000125845 UTR5 Human protein_coding chr20:6749084 chr20:6749073 . . 0 10 hm5C_associated_SNPs_14139 0 0 0 0 0 Ribosome 1 0.500231643976067 1 0.999536712047866 hm5C_site_15926 DeepMRMD:1;iRNA_m5C:0.999536712047866 15927 chr20 10015787 10015787 1 + C G rs375503444 10015796 + 10015776 10015816 41 TGTCCCGCGCGCCAGCTCACCAGCCCTACCCAAGGGACATC TGTCCCGCGCGGCAGCTCACCAGCCCTACCCAAGGGACATC < 41bp 1 0.576040975149117 1 0.324576735496521 experiment 0.847918049701767 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNAP25-AS1 ENSG00000227906 ncRNA_intronic Human antisense chr20:10015796 chr20:10015787 . . 0 12 hm5C_associated_SNPs_14141 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_15927 DeepMRMD:1;iRNA_m5C:0.999536712157815 15928 chr20 10015790 10015790 1 + G T rs114356776 10015796 + 10015776 10015816 41 TGTCCCGCGCGCCAGCTCACCAGCCCTACCCAAGGGACATC TGTCCCGCGCGCCATCTCACCAGCCCTACCCAAGGGACATC < 41bp 1 0.545369864565292 1 0.258076786994934 experiment 0.909260270869416 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNAP25-AS1 ENSG00000227906 ncRNA_intronic Human antisense chr20:10015796 chr20:10015790 . . 0 15 hm5C_associated_SNPs_14142 0 0 0 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_15928 DeepMRMD:1;iRNA_m5C:0.999536712157815 15929 chr20 17550808 17550808 1 + G T rs376638238 17550823 + 17550803 17550843 41 TCGCTGCCCGCCGGCTCCCTCCCCCGCGTCCCTGCGACCGC TCGCTTCCCGCCGGCTCCCTCCCCCGCGTCCCTGCGACCGC < 41bp 1 0.424629101986878 1 0.198182374238968 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSTN ENSG00000125868 UTR5 Human protein_coding chr20:17550823 chr20:17550808 . . 0 6 hm5C_associated_SNPs_14143 0 0 1 0 1 Ribosome 1 0.500231644549228 1 0.999536710901543 hm5C_site_15929 DeepMRMD:1;iRNA_m5C:0.999536710901543 15930 chr20 17970587 17970587 1 + A G rs61749088 17970585 + 17970565 17970605 41 CCTGTGTTTCTTCCTAGGTTCAATGTGGCTTAATTGTGGTG CCTGTGTTTCTTCCTAGGTTCAGTGTGGCTTAATTGTGGTG < 41bp 1 0.454449230994193 1 0.493365675210953 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MGME1 ENSG00000125871 CDS Human protein_coding chr20:17970585 chr20:17970587 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_14144 0 0 1 0 1 chromatin 1 0.500231643899828 1 0.999536712200343 hm5C_site_15930 DeepMRMD:1;iRNA_m5C:0.999536712200343 15931 chr20 18462421 18462421 1 + A G rs1055171 18462438 + 18462418 18462458 41 CACAGGTTTGGTCCGGGCACCCTGTGGACTCTGCCCGGTGA CACGGGTTTGGTCCGGGCACCCTGTGGACTCTGCCCGGTGA < 41bp 1 0.311992278702763 1 0.299031794071198 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462438 chr20:18462421 synonymous SNV . 0 4 hm5C_associated_SNPs_14148 0 0 1 0 1 Ribosome 1 0.500231645749235 1 0.999536708501531 hm5C_site_15931 DeepMRMD:1;iRNA_m5C:0.999536708501531 15932 chr20 18462431 18462431 1 + C A rs200897283 18462438 + 18462418 18462458 41 CACAGGTTTGGTCCGGGCACCCTGTGGACTCTGCCCGGTGA CACAGGTTTGGTCAGGGCACCCTGTGGACTCTGCCCGGTGA < 41bp 1 0.277874355316023 1 0.395755261182785 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462438 chr20:18462431 synonymous SNV . 0 14 hm5C_associated_SNPs_14150 0 0 1 0 1 Ribosome 1 0.500231643928696 1 0.999536712142608 hm5C_site_15932 DeepMRMD:1;iRNA_m5C:0.999536712142608 15933 chr20 18464601 18464601 1 + T A rs538046870 18464621 + 18464601 18464641 41 TTATATCTGGTTCACTACCACCATTTTCTGTTTCCTACTTT ATATATCTGGTTCACTACCACCATTTTCTGTTTCCTACTTT < 41bp 1 0.0514787751371613 1 0.120976656675339 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR3F ENSG00000132664 UTR3 Human protein_coding chr20:18464621 chr20:18464601 . . 0 1 hm5C_associated_SNPs_14151 0 0 1 0 0 Ribosome 1 0.500231694293897 1 0.999536611412206 hm5C_site_15933 DeepMRMD:1;iRNA_m5C:0.999536611412206 15934 chr20 18464610 18464610 1 + G C rs146172510 18464621 + 18464601 18464641 41 TTATATCTGGTTCACTACCACCATTTTCTGTTTCCTACTTT TTATATCTGCTTCACTACCACCATTTTCTGTTTCCTACTTT < 41bp 1 0.0422496742664879 1 0.0733941197395325 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR3F ENSG00000132664 UTR3 Human protein_coding chr20:18464621 chr20:18464610 . . 0 10 hm5C_associated_SNPs_14152 0 0 1 0 0 Ribosome 1 0.500231631632041 1 0.999536736735919 hm5C_site_15934 DeepMRMD:1;iRNA_m5C:0.999536736735919 15935 chr20 18465001 18465001 1 + C A rs5867 18465002 + 18464982 18465022 41 AGACTGAATGTTTGTGTGCCCCCAGAATTCTAATGTTGAAA AGACTGAATGTTTGTGTGCACCCAGAATTCTAATGTTGAAA < 41bp 1 0.330531795610309 1 0.0561441481113434 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR3F ENSG00000132664 UTR3 Human protein_coding chr20:18465002 chr20:18465001 . . 0 20 hm5C_associated_SNPs_14153 0 0 1 0 0 Ribosome 1 0.500236285065478 1 0.999527429869044 hm5C_site_15935 DeepMRMD:1;iRNA_m5C:0.999527429869044 15936 chr20 18465004 18465004 1 + C A rs1133724 18465002 + 18464982 18465022 41 AGACTGAATGTTTGTGTGCCCCCAGAATTCTAATGTTGAAA AGACTGAATGTTTGTGTGCCCCAAGAATTCTAATGTTGAAA < 41bp 1 0.286642186463163 1 0.0937210023403168 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR3F ENSG00000132664 UTR3 Human protein_coding chr20:18465002 chr20:18465004 . . 0 23 hm5C_associated_SNPs_14154 0 0 1 0 0 Ribosome 1 0.500237001680642 1 0.999525996638716 hm5C_site_15936 DeepMRMD:1;iRNA_m5C:0.999525996638716 15937 chr20 19937376 19937376 1 + C A rs202212179 19937385 + 19937365 19937405 41 CGGCTCCTCCACACCCACCCCATATGGCTGCAGCTGAGTCT CGGCTCCTCCAAACCCACCCCATATGGCTGCAGCTGAGTCT < 41bp 1 0.144907648509135 1 0.242052346467972 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19937385 chr20:19937376 nonsynonymous SNV 0.966 3 12 hm5C_associated_SNPs_14155 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15937 DeepMRMD:1;iRNA_m5C:0.999536712157815 15938 chr20 19955664 19955664 1 + C A rs180981486 19955679 + 19955659 19955699 41 CCAGACGAGCATGCCAGAAACAGTCAACCATAACAAACATG CCAGAAGAGCATGCCAGAAACAGTCAACCATAACAAACATG < 41bp 1 0.202524015425135 1 0.472838401794434 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19955679 chr20:19955664 nonsynonymous SNV 0.999 0 6 hm5C_associated_SNPs_14156 1 0 0 0 0 Nucleus 1 0.500231643919619 1 0.999536712160763 hm5C_site_15938 DeepMRMD:1;iRNA_m5C:0.999536712160763 not specified not specified 15939 chr20 19955673 19955673 1 + C G rs200780805 19955679 + 19955659 19955699 41 CCAGACGAGCATGCCAGAAACAGTCAACCATAACAAACATG CCAGACGAGCATGCGAGAAACAGTCAACCATAACAAACATG < 41bp 1 0.182152244690427 1 0.398468375205994 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19955679 chr20:19955673 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_14157 1 0 0 0 0 Nucleus 1 0.500231644933233 1 0.999536710133535 hm5C_site_15939 DeepMRMD:1;iRNA_m5C:0.999536710133535 not specified not specified 15940 chr20 19981310 19981310 1 + C A rs114329888 19981314 + 19981294 19981334 41 GTTGCACAGGAAAGACCCTCCTTGTGAGACCTTACATCACC GTTGCACAGGAAAGACACTCCTTGTGAGACCTTACATCACC < 41bp 1 0.420342617856747 1 0.161668628454208 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19981314 chr20:19981310 synonymous SNV . 0 17 hm5C_associated_SNPs_14158 0 0 0 0 1 Nucleus 1 0.500231643921111 1 0.999536712157778 hm5C_site_15940 DeepMRMD:1;iRNA_m5C:0.999536712157778 15941 chr20 21284004 21284004 1 + C G rs182718306 21284012 + 21283992 21284032 41 TACGCTCGTCAGCCGGTCGGCCGCCGCCTCCAGCCGTGTGC TACGCTCGTCAGGCGGTCGGCCGCCGCCTCCAGCCGTGTGC < 41bp 1 0.425446660330562 1 0.499219238758087 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XRN2 ENSG00000088930 UTR5 Human protein_coding chr20:21284012 chr20:21284004 . . 0 13 hm5C_associated_SNPs_14159 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_15941 DeepMRMD:1;iRNA_m5C:0.999536712157813 15942 chr20 25187724 25187724 1 + G A rs45506395 25187712 + 25187692 25187732 41 CTCTCCCCCCTTCCCACCAGCAGCCGCAGCACGGTCCTTGG CTCTCCCCCCTTCCCACCAGCAGCCGCAGCACAGTCCTTGG < 41bp 1 0.352206762488969 1 0.416556596755981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25187712 chr20:25187724 nonsynonymous SNV 0.001 1 33 hm5C_associated_SNPs_14160 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_15942 DeepMRMD:1;iRNA_m5C:0.999536712157815 15943 chr20 25198140 25198140 1 + C T rs145966134 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGGTACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC < 41bp 1 0.124841955883458 1 0.0970736145973206 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198140 synonymous SNV . 0 6 hm5C_associated_SNPs_14161 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643975753 1 0.999536712048493 hm5C_site_15943 DeepMRMD:1;iRNA_m5C:0.999536712048493 15944 chr20 25202734 25202734 1 + G A rs150656603 25202754 + 25202734 25202774 41 GCAGATCTGAAGCAGCAGCACCCCAGGCCGCACAAGCAGCA ACAGATCTGAAGCAGCAGCACCCCAGGCCGCACAAGCAGCA < 41bp 1 0.274090005203887 1 0.133333474397659 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 intronic Human protein_coding chr20:25202754 chr20:25202734 . . 0 1 hm5C_associated_SNPs_14162 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921131 1 0.999536712157739 hm5C_site_15944 DeepMRMD:1;iRNA_m5C:0.999536712157739 15945 chr20 25202763 25202763 1 + G A rs576337370 25202754 + 25202734 25202774 41 GCAGATCTGAAGCAGCAGCACCCCAGGCCGCACAAGCAGCA GCAGATCTGAAGCAGCAGCACCCCAGGCCACACAAGCAGCA < 41bp 1 0.28540006428604 1 0.0997558534145355 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 intronic Human protein_coding chr20:25202754 chr20:25202763 . . 0 30 hm5C_associated_SNPs_14163 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921103 1 0.999536712157795 hm5C_site_15945 DeepMRMD:1;iRNA_m5C:0.999536712157795 15946 chr20 25205881 25205881 1 + C T rs73339100 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACACAGCCGCAGAGCAGCCCCTTTTCATGCATGGACCT < 41bp 1 0.218930646886947 1 0.0372201502323151 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205881 nonsynonymous SNV 0.000 0 27 hm5C_associated_SNPs_14164 0 0 0 0 3 Endoplasmic reticulum 1 0.50023161877839 1 0.99953676244322 hm5C_site_15946 DeepMRMD:1;iRNA_m5C:0.99953676244322 15947 chr20 30157045 30157045 1 + C G rs552541919 30157025 + 30157005 30157045 41 GAGAAGAAAGAGAAATGATGCAGCTGGTGCCCGAGCCTCTC GAGAAGAAAGAGAAATGATGCAGCTGGTGCCCGAGCCTCTG < 41bp 1 0.687447815995142 1 0.491475224494934 experiment 0.625104368009716 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HM13-AS1 ENSG00000230613 ncRNA_intronic Human antisense chr20:30157025 chr20:30157045 . . 0 41 hm5C_associated_SNPs_14166 0 0 1 0 0 unknown 1 0.500231685906537 1 0.999536628186926 hm5C_site_15947 DeepMRMD:1;iRNA_m5C:0.999536628186926 15948 chr20 30194070 30194070 1 + A T rs184161698 30194079 + 30194059 30194099 41 AGGCACTGGCGAGGAGAGGGCGCTCCTCTCTGCACACCTAC AGGCACTGGCGTGGAGAGGGCGCTCCTCTCTGCACACCTAC < 41bp 1 0.489811713768595 1 0.233965694904327 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ID1 ENSG00000125968 UTR3 Human protein_coding chr20:30194079 chr20:30194070 . . 0 12 hm5C_associated_SNPs_14167 0 0 1 0 0 Endoplasmic reticulum 1 0.500174426372935 1 0.999651147254131 hm5C_site_15948 DeepMRMD:1;iRNA_m5C:0.999651147254131 15949 chr20 30194070 30194070 1 + A T rs184161698 30194083 + 30194063 30194103 41 ACTGGCGAGGAGAGGGCGCTCCTCTCTGCACACCTACTAGT ACTGGCGTGGAGAGGGCGCTCCTCTCTGCACACCTACTAGT < 41bp 1 0.376860506977964 1 0.139819711446762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ID1 ENSG00000125968 UTR3 Human protein_coding chr20:30194083 chr20:30194070 . . 0 8 hm5C_associated_SNPs_14168 0 0 1 0 0 Endoplasmic reticulum 1 0.500228152387993 1 0.999543695224014 hm5C_site_15949 DeepMRMD:1;iRNA_m5C:0.999543695224014 15950 chr20 30194098 30194098 1 + A G rs548388201 30194079 + 30194059 30194099 41 AGGCACTGGCGAGGAGAGGGCGCTCCTCTCTGCACACCTAC AGGCACTGGCGAGGAGAGGGCGCTCCTCTCTGCACACCTGC < 41bp 1 0.496152783921633 1 0.326176941394806 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ID1 ENSG00000125968 UTR3 Human protein_coding chr20:30194079 chr20:30194098 . . 0 40 hm5C_associated_SNPs_14169 0 0 1 0 0 Endoplasmic reticulum 1 0.500231618891291 1 0.999536762217417 hm5C_site_15950 DeepMRMD:1;iRNA_m5C:0.999536762217417 15951 chr20 30194098 30194098 1 + A G rs548388201 30194083 + 30194063 30194103 41 ACTGGCGAGGAGAGGGCGCTCCTCTCTGCACACCTACTAGT ACTGGCGAGGAGAGGGCGCTCCTCTCTGCACACCTGCTAGT < 41bp 1 0.413175322161202 1 0.13146910071373 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ID1 ENSG00000125968 UTR3 Human protein_coding chr20:30194083 chr20:30194098 . . 0 36 hm5C_associated_SNPs_14170 0 0 1 0 0 Endoplasmic reticulum 1 0.50023163948215 1 0.999536721035699 hm5C_site_15951 DeepMRMD:1;iRNA_m5C:0.999536721035699 15952 chr20 30381758 30381758 1 + G A rs1062794 30381750 + 30381730 30381770 41 CAAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGA CAAGAACTGTGGAAATATGCCCTTTCTCATTTGATTCTCGA < 41bp 1 0.022155131712374 1 0.0439035594463348 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381750 chr20:30381758 synonymous SNV . 0 29 hm5C_associated_SNPs_14171 0 0 1 0 1 Cytosol 1 0.500231643661866 1 0.999536712676267 hm5C_site_15952 DeepMRMD:1;iRNA_m5C:0.999536712676267 15953 chr20 30381758 30381758 1 + G A rs1062794 30381751 + 30381731 30381771 41 AAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGAG AAGAACTGTGGAAATATGCCCTTTCTCATTTGATTCTCGAG < 41bp 1 0.0253673106796956 1 0.0514507293701172 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381751 chr20:30381758 synonymous SNV . 0 28 hm5C_associated_SNPs_14172 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_15953 DeepMRMD:1;iRNA_m5C:0.999536712157815 15954 chr20 30489131 30489131 1 + G A rs80172772 30489143 + 30489123 30489163 41 GCTCTCCCGATGTGCTGACCCCTGCGATTTTCTCCAATGTG GCTCTCCCAATGTGCTGACCCCTGCGATTTTCTCCAATGTG < 41bp 1 0.0225309628410415 1 0.0962519347667694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTLL9 ENSG00000199497 ncRNA_exonic Human snRNA chr20:30489143 chr20:30489131 . . 0 9 hm5C_associated_SNPs_14173 0 0 0 0 0 exosome 1 0.500231643703232 1 0.999536712593535 hm5C_site_15954 DeepMRMD:1;iRNA_m5C:0.999536712593535 15955 chr20 30489131 30489131 1 + G A rs80172772 30489147 + 30489127 30489167 41 TCCCGATGTGCTGACCCCTGCGATTTTCTCCAATGTGGGAA TCCCAATGTGCTGACCCCTGCGATTTTCTCCAATGTGGGAA < 41bp 1 0.0506634782794242 1 0.136728495359421 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTLL9 ENSG00000199497 ncRNA_exonic Human snRNA chr20:30489147 chr20:30489131 . . 0 5 hm5C_associated_SNPs_14174 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15955 DeepMRMD:1;iRNA_m5C:0.999536712157815 15956 chr20 30489133 30489133 1 + T A rs532146929 30489143 + 30489123 30489163 41 GCTCTCCCGATGTGCTGACCCCTGCGATTTTCTCCAATGTG GCTCTCCCGAAGTGCTGACCCCTGCGATTTTCTCCAATGTG < 41bp 1 0.0305342788794739 1 0.0940327048301697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTLL9 ENSG00000199497 ncRNA_exonic Human snRNA chr20:30489143 chr20:30489133 . . 0 11 hm5C_associated_SNPs_14175 0 0 0 0 0 exosome 1 0.500231641443108 1 0.999536717113783 hm5C_site_15956 DeepMRMD:1;iRNA_m5C:0.999536717113783 15957 chr20 30489133 30489133 1 + T A rs532146929 30489147 + 30489127 30489167 41 TCCCGATGTGCTGACCCCTGCGATTTTCTCCAATGTGGGAA TCCCGAAGTGCTGACCCCTGCGATTTTCTCCAATGTGGGAA < 41bp 1 0.0735654489475921 1 0.15738919377327 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTLL9 ENSG00000199497 ncRNA_exonic Human snRNA chr20:30489147 chr20:30489133 . . 0 7 hm5C_associated_SNPs_14176 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15957 DeepMRMD:1;iRNA_m5C:0.999536712157815 15958 chr20 30526984 30526984 1 + C T rs201611906 30526975 + 30526955 30526995 41 AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA AGGGAGAAGCGAGTCGGGGGCTTTGACCTTATGTGGAATGA < 41bp 1 0.186177691876164 1 0.0786328315734863 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30526975 chr20:30526984 synonymous SNV . 0 30 hm5C_associated_SNPs_14177 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15958 DeepMRMD:1;iRNA_m5C:0.999536712157815 15959 chr20 30824059 30824059 1 + G C rs560263635 30824043 + 30824023 30824063 41 GCCACCACTAGGTTGTAAGCCTGTAGCTGGCTGGCTGATTT GCCACCACTAGGTTGTAAGCCTGTAGCTGGCTGGCTCATTT < 41bp 1 0.698642903889419 1 0.41394454240799 experiment 0.602714192221162 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POFUT1 ENSG00000101346 UTR3 Human protein_coding chr20:30824043 chr20:30824059 . . 0 37 hm5C_associated_SNPs_14178 0 0 1 0 0 Endoplasmic reticulum 1 0.500231693344648 1 0.999536613310704 hm5C_site_15959 DeepMRMD:1;iRNA_m5C:0.999536613310704 15960 chr20 30824599 30824599 1 + T C rs140363751 30824580 + 30824560 30824600 41 CGTCACCTCCATGCCAGGCACTGTGCTTGCTAATTGCTTTA CGTCACCTCCATGCCAGGCACTGTGCTTGCTAATTGCTTCA < 41bp 1 0.329877221354689 1 0.0730423927307129 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POFUT1 ENSG00000101346 UTR3 Human protein_coding chr20:30824580 chr20:30824599 . . 0 40 hm5C_associated_SNPs_14179 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643781127 1 0.999536712437745 hm5C_site_15960 DeepMRMD:1;iRNA_m5C:0.999536712437745 15961 chr20 30946482 30946482 1 + C A rs570751501 30946499 + 30946479 30946519 41 GCCCCCCCCACCGCCGCCGCCGCCCCAGCCCCGCGCCACCG GCCACCCCCACCGCCGCCGCCGCCCCAGCCCCGCGCCACCG < 41bp 1 0.545277720992271 1 0.264141738414764 experiment 0.909444558015458 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ASXL1 ENSG00000171456 UTR5 Human protein_coding chr20:30946499 chr20:30946482 . . 0 4 hm5C_associated_SNPs_14180 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15961 DeepMRMD:1;iRNA_m5C:0.999536712157815 15962 chr20 30946486 30946486 1 + C A rs534633106 30946499 + 30946479 30946519 41 GCCCCCCCCACCGCCGCCGCCGCCCCAGCCCCGCGCCACCG GCCCCCCACACCGCCGCCGCCGCCCCAGCCCCGCGCCACCG < 41bp 1 0.56016624153487 1 0.29874861240387 experiment 0.879667516930259 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ASXL1 ENSG00000171456 UTR5 Human protein_coding chr20:30946499 chr20:30946486 . . 0 8 hm5C_associated_SNPs_14181 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15962 DeepMRMD:1;iRNA_m5C:0.999536712157815 15963 chr20 30946486 30946486 1 + C A rs534633106 30946503 + 30946483 30946523 41 CCCCCACCGCCGCCGCCGCCCCAGCCCCGCGCCACCGCCCC CCCACACCGCCGCCGCCGCCCCAGCCCCGCGCCACCGCCCC < 41bp 1 0.501006813017943 1 0.238633811473846 experiment 0.997986373964114 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ASXL1 ENSG00000171456 UTR5 Human protein_coding chr20:30946503 chr20:30946486 . . 0 4 hm5C_associated_SNPs_14182 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_15963 DeepMRMD:1;iRNA_m5C:0.999536712157815 15964 chr20 31021430 31021430 1 + G C rs141346625 31021436 + 31021416 31021456 41 CAGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCT CAGCACCCGACCTGCAGGGTCCCGAATTCCCAGTTGAGTCT < 41bp 1 0.551086684954266 1 0.177950114011765 experiment 0.897826630091468 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021436 chr20:31021430 nonsynonymous SNV 0.007 1 15 hm5C_associated_SNPs_14183 1 0 1 0 0 Nucleus 1 0.500231341977932 1 0.999537316044136 hm5C_site_15964 DeepMRMD:1;iRNA_m5C:0.999537316044136 not specified not specified 15965 chr20 31021430 31021430 1 + G C rs141346625 31021437 + 31021417 31021457 41 AGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCTG AGCACCCGACCTGCAGGGTCCCGAATTCCCAGTTGAGTCTG < 41bp 1 0.492557458773821 1 0.270046412944794 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021437 chr20:31021430 nonsynonymous SNV 0.007 1 14 hm5C_associated_SNPs_14184 1 0 1 0 0 Nucleus 1 0.500231643921107 1 0.999536712157787 hm5C_site_15965 DeepMRMD:1;iRNA_m5C:0.999536712157787 not specified not specified 15966 chr20 31024488 31024488 1 + C T rs6057581 31024479 + 31024459 31024499 41 AGCGCCCCAGGCCTGCGGACCCGATGCCTCTTCCTGCTGAG AGCGCCCCAGGCCTGCGGACCCGATGCCTTTTCCTGCTGAG < 41bp 1 0.0946572877706167 1 0.35127454996109 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31024479 chr20:31024488 nonsynonymous SNV 0.246 2 30 hm5C_associated_SNPs_14185 2 0 1 0 0 Nucleus 1 0.500231643324489 1 0.999536713351022 hm5C_site_15966 DeepMRMD:1;iRNA_m5C:0.999536713351022 not specified not specified 15967 chr20 31025163 31025163 1 + A G rs2295764 31025162 + 31025142 31025182 41 TAAATTATGGCCATGGGAAACATTGTATATTTAGTGTGTGT TAAATTATGGCCATGGGAAACGTTGTATATTTAGTGTGTGT < 41bp 1 0.0547027406921344 1 0.151070445775986 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 UTR3 Human protein_coding chr20:31025162 chr20:31025163 . . 0 22 hm5C_associated_SNPs_14186 1 0 1 3 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_15967 DeepMRMD:1;iRNA_m5C:0.999536712157815 C-like syndrome C-like syndrome 15968 chr20 31374350 31374350 1 + C T rs559899499 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGGTACAGGCCTTCCCCACGTTCCACCCGAGGCCG < 41bp 1 0.360102865413138 1 0.498719871044159 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374350 nonsynonymous SNV 0.678 1 10 hm5C_associated_SNPs_14187 0 0 0 0 1 chromatin 1 0.500231643918953 1 0.999536712162094 hm5C_site_15968 DeepMRMD:1;iRNA_m5C:0.999536712162094 15969 chr20 31374350 31374350 1 + C T rs559899499 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGAGAGGTACAGGCCTTCCCCACGTTCCACCCGAGGCCGG < 41bp 1 0.644792484650864 1 0.508125364780426 experiment 0.710415030698271 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374350 nonsynonymous SNV 0.678 1 9 hm5C_associated_SNPs_14188 0 0 0 0 1 chromatin 1 0.500231643921106 0.983749270439148 0.999536712157789 hm5C_site_15969 DeepMRMD:0.983749270439148;iRNA_m5C:0.999536712157789 15970 chr20 32441602 32441602 1 + T C rs187600351 32441589 + 32441569 32441609 41 GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTTGAATTTC GGCGGGGTGGGAAGTGCCTGCTGTTTATAATGTCGAATTTC < 41bp 1 0.334616395121613 1 0.283725470304489 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHMP4B ENSG00000101421 UTR3 Human protein_coding chr20:32441589 chr20:32441602 . . 0 34 hm5C_associated_SNPs_14189 0 0 1 6 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15970 DeepMRMD:1;iRNA_m5C:0.999536712157815 15971 chr20 33515537 33515537 1 + G A rs201877071 33515519 + 33515499 33515539 41 CAGATGCCAGTACTGTCTGCCCATTGGCTCCAGGGGCTGTA CAGATGCCAGTACTGTCTGCCCATTGGCTCCAGGGGCTATA < 41bp 1 0.0443352485680227 1 0.0818024873733521 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACSS2 ENSG00000131069 UTR3 Human protein_coding chr20:33515519 chr20:33515537 . . 0 39 hm5C_associated_SNPs_14190 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_15971 DeepMRMD:1;iRNA_m5C:0.999536712157815 15972 chr20 34079058 34079058 1 + G T rs145916875 34079073 + 34079053 34079093 41 GAGAAGGAGAGAGTATCCCTCCTGGAGACACTGCTGCAGAC GAGAATGAGAGAGTATCCCTCCTGGAGACACTGCTGCAGAC < 41bp 1 0.182054545051612 1 0.736310124397278 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP250 ENSG00000126001 CDS Human protein_coding chr20:34079073 chr20:34079058 nonsynonymous SNV 0.999 1 6 hm5C_associated_SNPs_14191 0 0 1 0 1 Cytosol 1 0.500231639482248 0.527379751205444 0.999536721035505 hm5C_site_15972 DeepMRMD:0.527379751205444;iRNA_m5C:0.999536721035505 15973 chr20 34132463 34132463 1 + A G rs183825632 34132470 + 34132450 34132490 41 CCCTTGTCAAGGCACACGGCCATAGTGGGTAGCACAGAGCC CCCTTGTCAAGGCGCACGGCCATAGTGGGTAGCACAGAGCC < 41bp 1 0.257997125293386 1 0.27869725227356 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ERGIC3 ENSG00000224497 ncRNA_exonic Human processed_pseudogene chr20:34132470 chr20:34132463 . . 0 14 hm5C_associated_SNPs_14192 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_15973 DeepMRMD:1;iRNA_m5C:0.999536712157816 15974 chr20 34288854 34288854 1 + C T rs3088078 34288867 + 34288847 34288887 41 TCTGTCCCTTCCCATCAATCCCAGCCCATGTACTAATAAAA TCTGTCCTTTCCCATCAATCCCAGCCCATGTACTAATAAAA < 41bp 1 0.166428515996114 1 0.107406735420227 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ROMO1 ENSG00000125995 UTR3 Human protein_coding chr20:34288867 chr20:34288854 . . 0 8 hm5C_associated_SNPs_14193 0 0 1 0 0 Ribosome 1 0.500231643923755 1 0.999536712152491 hm5C_site_15974 DeepMRMD:1;iRNA_m5C:0.999536712152491 15975 chr20 34288854 34288854 1 + C T rs3088078 34288868 + 34288848 34288888 41 CTGTCCCTTCCCATCAATCCCAGCCCATGTACTAATAAAAG CTGTCCTTTCCCATCAATCCCAGCCCATGTACTAATAAAAG < 41bp 1 0.288158223772416 1 0.0954107344150543 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ROMO1 ENSG00000125995 UTR3 Human protein_coding chr20:34288868 chr20:34288854 . . 0 7 hm5C_associated_SNPs_14194 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15975 DeepMRMD:1;iRNA_m5C:0.999536712157815 15976 chr20 34288871 34288871 1 + C T rs148571469 34288867 + 34288847 34288887 41 TCTGTCCCTTCCCATCAATCCCAGCCCATGTACTAATAAAA TCTGTCCCTTCCCATCAATCCCAGTCCATGTACTAATAAAA < 41bp 1 0.193880806523905 1 0.232634633779526 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ROMO1 ENSG00000125995 UTR3 Human protein_coding chr20:34288867 chr20:34288871 . . 0 25 hm5C_associated_SNPs_14195 0 0 1 0 0 Ribosome 1 0.500231615296486 1 0.999536769407029 hm5C_site_15976 DeepMRMD:1;iRNA_m5C:0.999536769407029 15977 chr20 34288871 34288871 1 + C T rs148571469 34288868 + 34288848 34288888 41 CTGTCCCTTCCCATCAATCCCAGCCCATGTACTAATAAAAG CTGTCCCTTCCCATCAATCCCAGTCCATGTACTAATAAAAG < 41bp 1 0.168888308087544 1 0.292150616645813 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ROMO1 ENSG00000125995 UTR3 Human protein_coding chr20:34288868 chr20:34288871 . . 0 24 hm5C_associated_SNPs_14196 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15977 DeepMRMD:1;iRNA_m5C:0.999536712157815 15978 chr20 34817343 34817343 1 + C T rs200564466 34817342 + 34817322 34817362 41 GGGCCTTCATTCTGGATTCTCCGACGCAACACTGACGTCCC GGGCCTTCATTCTGGATTCTCTGACGCAACACTGACGTCCC < 41bp 1 0.357451405114998 1 0.654270887374878 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPB41L1 ENSG00000088367 UTR3 Human protein_coding chr20:34817342 chr20:34817343 . . 0 22 hm5C_associated_SNPs_14197 0 0 1 0 1 Cytoplasm 1 0.500231646316664 0.691458225250244 0.999536707366673 hm5C_site_15978 DeepMRMD:0.691458225250244;iRNA_m5C:0.999536707366673 15979 chr20 34843689 34843689 1 + C T rs6060875 34843697 + 34843677 34843717 41 CGCTCTCAGCTGCGAGGGGCCCCTTCCCACAGGGCTGCAGT CGCTCTCAGCTGTGAGGGGCCCCTTCCCACAGGGCTGCAGT < 41bp 1 0.0760434999894436 1 0.0771999359130859 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AAR2 ENSG00000131043 UTR3 Human protein_coding chr20:34843697 chr20:34843689 . . 0 13 hm5C_associated_SNPs_14199 0 0 1 0 0 Ribosome 1 0.500231639059603 1 0.999536721880794 hm5C_site_15979 DeepMRMD:1;iRNA_m5C:0.999536721880794 15980 chr20 35177686 35177686 1 + C T rs2076693 35177698 + 35177678 35177718 41 GCCCCCGCCAGTCACCCCTCCCCGCACACACCCGTCCATAC GCCCCCGCTAGTCACCCCTCCCCGCACACACCCGTCCATAC < 41bp 1 0.328089051720058 1 0.585448563098907 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DLGAP4-AS1 ENSG00000259716 ncRNA_exonic Human other chr20:35177698 chr20:35177686 . . 0 9 hm5C_associated_SNPs_14200 0 0 0 0 0 unknown 1 0.500231643930972 0.829102873802186 0.999536712138056 hm5C_site_15980 DeepMRMD:0.829102873802186;iRNA_m5C:0.999536712138056 15981 chr20 35177688 35177688 1 + G A rs200649093 35177698 + 35177678 35177718 41 GCCCCCGCCAGTCACCCCTCCCCGCACACACCCGTCCATAC GCCCCCGCCAATCACCCCTCCCCGCACACACCCGTCCATAC < 41bp 1 0.3139054534447 1 0.318199992179871 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DLGAP4-AS1 ENSG00000259716 ncRNA_exonic Human other chr20:35177698 chr20:35177688 . . 0 11 hm5C_associated_SNPs_14201 0 0 1 0 0 unknown 1 0.500231749327212 1 0.999536501345576 hm5C_site_15981 DeepMRMD:1;iRNA_m5C:0.999536501345576 15982 chr20 35177689 35177689 1 + T C rs185238685 35177698 + 35177678 35177718 41 GCCCCCGCCAGTCACCCCTCCCCGCACACACCCGTCCATAC GCCCCCGCCAGCCACCCCTCCCCGCACACACCCGTCCATAC < 41bp 1 0.351365565399186 1 0.488828033208847 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DLGAP4-AS1 ENSG00000259716 ncRNA_exonic Human other chr20:35177698 chr20:35177689 . . 0 12 hm5C_associated_SNPs_14202 0 0 0 0 0 unknown 1 0.500231643922143 1 0.999536712155715 hm5C_site_15982 DeepMRMD:1;iRNA_m5C:0.999536712155715 15983 chr20 35220485 35220485 1 + C G rs6101371 35220494 + 35220474 35220514 41 AATATTTTTATCTTGGGGACCAGCTAAGTCTCTGCAGTAGT AATATTTTTATGTTGGGGACCAGCTAAGTCTCTGCAGTAGT < 41bp 1 0.0781405821777622 1 0.386476874351501 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGIF2 ENSG00000259716 ncRNA_intronic Human other chr20:35220494 chr20:35220485 . . 0 12 hm5C_associated_SNPs_14203 0 0 1 0 0 Nucleus 1 0.500231643923722 1 0.999536712152555 hm5C_site_15983 DeepMRMD:1;iRNA_m5C:0.999536712152555 15984 chr20 35857284 35857284 1 + T C rs73293748 35857281 + 35857261 35857301 41 AATAAGCTTGGGAGGTGAGGCACTGTGTGCAGTCTCCATAA AATAAGCTTGGGAGGTGAGGCACCGTGTGCAGTCTCCATAA < 41bp 1 0.682290931939663 1 0.329100966453552 experiment 0.635418136120674 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPN2 ENSG00000118705 intronic Human protein_coding chr20:35857281 chr20:35857284 . . 0 24 hm5C_associated_SNPs_14204 0 0 1 2 0 Ribosome 1 0.500231649220628 1 0.999536701558745 hm5C_site_15984 DeepMRMD:1;iRNA_m5C:0.999536701558745 15985 chr20 35944886 35944886 1 + A C rs551454296 35944904 + 35944884 35944924 41 ACATTGTGTTCCCCCGCATTCCAGGCTCAGGGTCTGAGGAG ACCTTGTGTTCCCCCGCATTCCAGGCTCAGGGTCTGAGGAG < 41bp 1 0.689327012450402 1 0.70491623878479 experiment 0.621345975099196 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MANBAL ENSG00000101363 UTR3 Human protein_coding chr20:35944904 chr20:35944886 . . 0 3 hm5C_associated_SNPs_14205 0 0 1 0 0 Ribosome 1 0.500231643921096 0.59016752243042 0.999536712157808 hm5C_site_15985 DeepMRMD:0.59016752243042;iRNA_m5C:0.999536712157808 15986 chr20 35945494 35945494 1 + G A rs151295793 35945500 + 35945480 35945520 41 AGCCTCTGAAATGGGAGGCTCGTCAATTTCAGACCAACCTC AGCCTCTGAAATGGAAGGCTCGTCAATTTCAGACCAACCTC < 41bp 1 0.507695994058163 1 0.0903094410896301 experiment 0.984608011883674 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MANBAL ENSG00000101363 UTR3 Human protein_coding chr20:35945500 chr20:35945494 . . 0 15 hm5C_associated_SNPs_14206 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_15986 DeepMRMD:1;iRNA_m5C:0.999536712157815 15987 chr20 36032926 36032926 1 + C T rs550839164 36032938 + 36032918 36032958 41 TTCTCCTCCCCAAGTCGGCACCCTTTAACTCATGAGGAGGG TTCTCCTCTCCAAGTCGGCACCCTTTAACTCATGAGGAGGG < 41bp 1 0.0307727475031574 1 0.135890126228333 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SRC ENSG00000197122 UTR3 Human protein_coding chr20:36032938 chr20:36032926 . . 0 9 hm5C_associated_SNPs_14207 0 0 1 0 0 Ribosome 1 0.500231643921119 1 0.999536712157761 hm5C_site_15987 DeepMRMD:1;iRNA_m5C:0.999536712157761 15988 chr20 36033222 36033222 1 + G A rs550802233 36033210 + 36033190 36033230 41 TTGGGTGTGTGGTGGATTCTCCCTGGGCCTCAGTGTGCCCA TTGGGTGTGTGGTGGATTCTCCCTGGGCCTCAATGTGCCCA < 41bp 1 0.412261975854082 1 0.309039950370789 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SRC ENSG00000197122 UTR3 Human protein_coding chr20:36033210 chr20:36033222 . . 0 33 hm5C_associated_SNPs_14208 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_15988 DeepMRMD:1;iRNA_m5C:0.999536712157814 15989 chr20 36531649 36531649 1 + A G rs553495564 36531656 + 36531636 36531676 41 GGGCAGCTGCCGGAGCCGGGCAGCCAGGCCGCTCAGGGCAG GGGCAGCTGCCGGGGCCGGGCAGCCAGGCCGCTCAGGGCAG < 41bp 1 0.584386293258273 1 0.460828572511673 experiment 0.831227413483455 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VSTM2L ENSG00000132821 UTR5 Human protein_coding chr20:36531656 chr20:36531649 . . 0 14 hm5C_associated_SNPs_14209 0 0 0 0 0 exosome 1 0.50023164392112 1 0.999536712157761 hm5C_site_15989 DeepMRMD:1;iRNA_m5C:0.999536712157761 15990 chr20 37076726 37076726 1 + C T rs76979192 37076732 + 37076712 37076752 41 TTTGCTCTTTTCTGCGCCTGCATTCGTAAGTGATCACGGGC TTTGCTCTTTTCTGTGCCTGCATTCGTAAGTGATCACGGGC < 41bp 1 0.0394674257367434 1 0.0497991442680359 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA71E ENSG00000174365 ncRNA_exonic Human processed_transcript chr20:37076732 chr20:37076726 . . 0 15 hm5C_associated_SNPs_14211 0 0 1 0 0 unknown 1 0.500231643921109 1 0.999536712157782 hm5C_site_15990 DeepMRMD:1;iRNA_m5C:0.999536712157782 15991 chr20 37144944 37144944 1 + C T rs556665696 37144939 + 37144919 37144959 41 GCAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC GCAAGAATTGAATCAGTATCCCTGCTTTAAACATCTGCCTC < 41bp 1 0.175322819182005 1 0.254383504390717 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37144939 chr20:37144944 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_14212 0 0 1 0 1 Nucleus 1 0.500231643255889 1 0.999536713488223 hm5C_site_15991 DeepMRMD:1;iRNA_m5C:0.999536713488223 15992 chr20 37570725 37570725 1 + C T rs3752293 37570736 + 37570716 37570756 41 TCTCAATTTCTGGATATGTGCATGGATCTGAAAGTTCATCC TCTCAATTTTTGGATATGTGCATGGATCTGAAAGTTCATCC < 41bp 1 0.441508885795532 1 0.0714190006256104 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570736 chr20:37570725 synonymous SNV . 0 10 hm5C_associated_SNPs_14213 0 0 1 0 1 Ribosome 1 0.500231645380251 1 0.999536709239498 hm5C_site_15992 DeepMRMD:1;iRNA_m5C:0.999536709239498 15993 chr20 37580948 37580948 1 + C A rs182339227 37580957 + 37580937 37580977 41 TGGGCACCCCCCACCTGGAACTGTACTTGAGTGACTCACTT TGGGCACCCCCAACCTGGAACTGTACTTGAGTGACTCACTT < 41bp 1 0.292428428425708 1 0.140103191137314 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37580957 chr20:37580948 nonsynonymous SNV 0.636 1 12 hm5C_associated_SNPs_14214 0 0 1 0 0 Ribosome 1 0.500231643922966 1 0.999536712154068 hm5C_site_15993 DeepMRMD:1;iRNA_m5C:0.999536712154068 15994 chr20 37632424 37632424 1 + C T rs140757763 37632421 + 37632401 37632441 41 GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACT GAAACTGTTGTGTCGATGCTCATTGAGCAGGCTCGAGCACT < 41bp 1 0.174148464623581 1 0.0164184868335724 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632421 chr20:37632424 synonymous SNV . 0 24 hm5C_associated_SNPs_14215 0 0 1 0 1 Endoplasmic reticulum 1 0.500231628982396 1 0.999536742035209 hm5C_site_15994 DeepMRMD:1;iRNA_m5C:0.999536742035209 15995 chr20 39797465 39797465 1 + T C rs753381 39797451 + 39797431 39797471 41 TACAAGGCCCAGAGGGAGGACGAGCTGACCTTCATCAAGAG TACAAGGCCCAGAGGGAGGACGAGCTGACCTTCACCAAGAG < 41bp 1 0.292445570560238 1 0.685719966888428 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39797451 chr20:39797465 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_14216 0 1 1 0 1 Cytosol 1 0.500231698331321 0.628560066223144 0.999536603337359 hm5C_site_15995 DeepMRMD:0.628560066223144;iRNA_m5C:0.999536603337359 15996 chr20 39802814 39802814 1 + G T rs33917926 39802812 + 39802792 39802832 41 GTGGTACGTCCCTGCGGGAGCGGGGCTCAGATGCCTCAGGC GTGGTACGTCCCTGCGGGAGCGTGGCTCAGATGCCTCAGGC < 41bp 1 0.582771274310048 1 0.574688017368317 experiment 0.834457451379904 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39802812 chr20:39802814 synonymous SNV . 0 23 hm5C_associated_SNPs_14218 0 0 1 0 2 Cytosol 1 0.500231643888746 0.850623965263366 0.999536712222508 hm5C_site_15996 DeepMRMD:0.850623965263366;iRNA_m5C:0.999536712222508 15997 chr20 39977786 39977786 1 + G A rs75791892 39977802 + 39977782 39977822 41 ACTCGGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC ACTCAGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC < 41bp 1 0.55776631560111 1 0.430325567722321 experiment 0.884467368797779 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977802 chr20:39977786 synonymous SNV . 0 5 hm5C_associated_SNPs_14219 0 0 1 0 3 Nucleus 1 0.50023164395164 1 0.999536712096719 hm5C_site_15997 DeepMRMD:1;iRNA_m5C:0.999536712096719 15998 chr20 39987612 39987612 1 + G A rs74974231 39987629 + 39987609 39987649 41 GAAGGGGAAGGAGGAGGCTGCAGGTTGGTTGGCAGCTAGAG GAAAGGGAAGGAGGAGGCTGCAGGTTGGTTGGCAGCTAGAG < 41bp 1 0.557581088426456 1 0.372860133647919 experiment 0.884837823147087 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LPIN3 ENSG00000132793 UTR3 Human protein_coding chr20:39987629 chr20:39987612 . . 0 4 hm5C_associated_SNPs_14220 0 0 1 0 0 Nucleus 1 0.500215115196229 1 0.999569769607542 hm5C_site_15998 DeepMRMD:1;iRNA_m5C:0.999569769607542 15999 chr20 42343777 42343777 1 + A G rs191418662 42343775 + 42343755 42343795 41 GACTTGGTTTTGGTTTCAGCCGACAACTGCCCCTTCAAACT GACTTGGTTTTGGTTTCAGCCGGCAACTGCCCCTTCAAACT < 41bp 1 0.699735887234625 1 0.89864718914032 experiment 0.60052822553075 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42343775 chr20:42343777 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_14222 0 0 1 0 1 Cytosol 1 0.500232019453507 0.20270562171936 0.999535961092986 hm5C_site_15999 DeepMRMD:0.20270562171936;iRNA_m5C:0.999535961092986 16000 chr20 42344978 42344978 1 + G A rs536904172 42344961 + 42344941 42344981 41 ACTTCCAGGTCTGCCTGGTTCCCTCCCCAAGGCCACAGGGA ACTTCCAGGTCTGCCTGGTTCCCTCCCCAAGGCCACAAGGA < 41bp 1 0.13425447118849 1 0.0443129539489746 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 UTR3 Human protein_coding chr20:42344961 chr20:42344978 . . 0 38 hm5C_associated_SNPs_14223 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16000 DeepMRMD:1;iRNA_m5C:0.999536712157815 16001 chr20 42695404 42695404 1 + C T rs149010935 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTTGGGATCCTGCTCACCTGGCCCATCCAA < 41bp 1 0.426803837030596 1 0.136575073003769 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695404 nonsynonymous SNV 0.573 0 14 hm5C_associated_SNPs_14224 0 0 1 0 2 exosome 1 0.500231644324143 1 0.999536711351715 hm5C_site_16001 DeepMRMD:1;iRNA_m5C:0.999536711351715 16002 chr20 42698103 42698103 1 + A G rs144152575 42698086 + 42698066 42698106 41 TTGTCTATTTATGAAGAAACCTTGAGAACGAAGTTACAGCT TTGTCTATTTATGAAGAAACCTTGAGAACGAAGTTACGGCT < 41bp 1 0.540733955855416 1 0.549947142601013 experiment 0.918532088289168 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOX2 ENSG00000124191 UTR3 Human protein_coding chr20:42698086 chr20:42698103 . . 0 38 hm5C_associated_SNPs_14225 0 0 0 0 0 exosome 1 0.500231643919541 0.900105714797974 0.999536712160917 hm5C_site_16002 DeepMRMD:0.900105714797974;iRNA_m5C:0.999536712160917 16003 chr20 43343997 43343997 1 + C T rs185897223 43344003 + 43343983 43344023 41 AAGACTCACAGGTCCGCCTCCCAGGCTCAAAGCTGGCTCTG AAGACTCACAGGTCTGCCTCCCAGGCTCAAAGCTGGCTCTG < 41bp 1 0.388275509211545 1 0.74122941493988 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCNK15-AS1 ENSG00000244558 ncRNA_intronic Human antisense chr20:43344003 chr20:43343997 . . 0 15 hm5C_associated_SNPs_14226 0 0 0 0 1 unknown 1 0.500231643921093 0.51754117012024 0.999536712157815 hm5C_site_16003 DeepMRMD:0.51754117012024;iRNA_m5C:0.999536712157815 16004 chr20 43356156 43356156 1 + C T rs1061098 43356149 + 43356129 43356169 41 GTATGGCAGAGGTGCAAGACCTAGTCCCCTTTCCTCTAACT GTATGGCAGAGGTGCAAGACCTAGTCCTCTTTCCTCTAACT < 41bp 1 0.457067375605486 1 0.0471051931381226 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNK15-AS1 ENSG00000244558 ncRNA_intronic Human antisense chr20:43356149 chr20:43356156 . . 0 28 hm5C_associated_SNPs_14227 0 1 1 2 0 unknown 1 0.500231643921135 1 0.99953671215773 hm5C_site_16004 DeepMRMD:1;iRNA_m5C:0.99953671215773 16005 chr20 43530403 43530403 1 + A C rs142757633 43530409 + 43530389 43530429 41 AGAGGAATGAGAAGAAGCAGCAGATGGGCAAAGAGTACCGT AGAGGAATGAGAAGCAGCAGCAGATGGGCAAAGAGTACCGT < 41bp 1 0.628504413326908 1 0.637706577777863 experiment 0.742991173346185 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout YWHAB ENSG00000166913 CDS Human protein_coding chr20:43530409 chr20:43530403 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_14228 0 0 1 0 1 Ribosome 1 0.500231643921092 0.724586844444274 0.999536712157815 hm5C_site_16005 DeepMRMD:0.724586844444274;iRNA_m5C:0.999536712157815 16006 chr20 43535101 43535101 1 + T C rs6876 43535105 + 43535085 43535125 41 CTCGTGCTTTGTGATCTGTTCAGTGTCACTCTGTACCCTCA CTCGTGCTTTGTGATCCGTTCAGTGTCACTCTGTACCCTCA < 41bp 1 0.493354321020426 1 0.340348154306412 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control YWHAB ENSG00000166913 UTR3 Human protein_coding chr20:43535105 chr20:43535101 . . 0 17 hm5C_associated_SNPs_14229 0 0 1 1 1 Ribosome 1 0.500231643917603 1 0.999536712164794 hm5C_site_16006 DeepMRMD:1;iRNA_m5C:0.999536712164794 16007 chr20 44035237 44035237 1 + G A rs541042573 44035253 + 44035233 44035273 41 TCCCGGCTCCCAGGGCCCGTCGGTCCCCCGGGAGCCCTGGA TCCCAGCTCCCAGGGCCCGTCGGTCCCCCGGGAGCCCTGGA < 41bp 1 0.340977724236444 1 0.845628023147583 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DBNDD2 ENSG00000244274 CDS Human protein_coding chr20:44035253 chr20:44035237 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_14230 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643919787 0.308743953704834 0.999536712160425 hm5C_site_16007 DeepMRMD:0.308743953704834;iRNA_m5C:0.999536712160425 16008 chr20 44050050 44050050 1 + C T rs146896700 44050042 + 44050022 44050062 41 GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACGT GAGGCCCCCCCAGTGCCCTTCCTGCATGTCCAGCGGTACGT < 41bp 1 0.121685914047061 1 0.0529753267765045 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44050042 chr20:44050050 nonsynonymous SNV 0.990 3 29 hm5C_associated_SNPs_14231 0 0 1 1 1 Ribosome 1 0.500231876183108 1 0.999536247633783 hm5C_site_16008 DeepMRMD:1;iRNA_m5C:0.999536247633783 16009 chr20 44050061 44050061 1 + G A rs370184382 44050042 + 44050022 44050062 41 GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACGT GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACAT < 41bp 1 0.131362828726227 1 0.0526649653911591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44050042 chr20:44050061 nonsynonymous SNV 0.949 4 40 hm5C_associated_SNPs_14232 0 0 1 1 1 Ribosome 1 0.500233507613324 1 0.999532984773352 hm5C_site_16009 DeepMRMD:1;iRNA_m5C:0.999532984773352 16010 chr20 44505973 44505973 1 + T C rs2903808 44505985 + 44505965 44506005 41 GGAGACAGTCACCTCTGTGGCCAAGATGCTGAGCATCTTCA GGAGACAGCCACCTCTGTGGCCAAGATGCTGAGCATCTTCA < 41bp 1 0.248883769795827 1 0.120402902364731 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM3 ENSG00000132801 CDS Human protein_coding chr20:44505985 chr20:44505973 nonsynonymous SNV 0.591 0 9 hm5C_associated_SNPs_14233 0 0 0 0 0 Cytosol 1 0.500231643916935 1 0.999536712166131 hm5C_site_16010 DeepMRMD:1;iRNA_m5C:0.999536712166131 16011 chr20 44512463 44512463 1 + A G rs376456023 44512456 + 44512436 44512476 41 GTGCCCGCCGCCAGGTGCTCCAGCCCGACATGCTGCCGGCT GTGCCCGCCGCCAGGTGCTCCAGCCCGGCATGCTGCCGGCT < 41bp 1 0.370239148214226 1 0.47146874666214 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSWIM1 ENSG00000168612 CDS Human protein_coding chr20:44512456 chr20:44512463 nonsynonymous SNV 0.968 0 28 hm5C_associated_SNPs_14234 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16011 DeepMRMD:1;iRNA_m5C:0.999536712157815 16012 chr20 44513048 44513048 1 + C T rs150692129 44513043 + 44513023 44513063 41 AAGGAGTCTGTCTCCGTCACCCAGGCTGGAGTGCAGTGGCG AAGGAGTCTGTCTCCGTCACCCAGGTTGGAGTGCAGTGGCG < 41bp 1 0.470840204577555 1 0.434581935405731 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513043 chr20:44513048 . . 0 26 hm5C_associated_SNPs_14235 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16012 DeepMRMD:1;iRNA_m5C:0.999536712157815 16013 chr20 44513048 44513048 1 + C T rs150692129 44513056 + 44513036 44513076 41 CCGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCTGCTCA CCGTCACCCAGGTTGGAGTGCAGTGGCGCAATCTCTGCTCA < 41bp 1 0.679595711383033 1 0.418041706085205 experiment 0.640808577233933 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513056 chr20:44513048 . . 0 13 hm5C_associated_SNPs_14237 0 0 1 0 0 nucleus 1 0.500231643895573 1 0.999536712208853 hm5C_site_16013 DeepMRMD:1;iRNA_m5C:0.999536712208853 16014 chr20 44513063 44513063 1 + G A rs544237662 44513043 + 44513023 44513063 41 AAGGAGTCTGTCTCCGTCACCCAGGCTGGAGTGCAGTGGCG AAGGAGTCTGTCTCCGTCACCCAGGCTGGAGTGCAGTGGCA < 41bp 1 0.410203962495915 1 0.338188290596008 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513043 chr20:44513063 . . 0 41 hm5C_associated_SNPs_14238 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16014 DeepMRMD:1;iRNA_m5C:0.999536712157815 16015 chr20 44513063 44513063 1 + G A rs544237662 44513044 + 44513024 44513064 41 AGGAGTCTGTCTCCGTCACCCAGGCTGGAGTGCAGTGGCGC AGGAGTCTGTCTCCGTCACCCAGGCTGGAGTGCAGTGGCAC < 41bp 1 0.634661812251536 1 0.873387813568115 experiment 0.730676375496928 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513044 chr20:44513063 . . 0 40 hm5C_associated_SNPs_14239 0 0 0 0 0 nucleus 1 0.500232249280578 0.25322437286377 0.999535501438844 hm5C_site_16015 DeepMRMD:0.25322437286377;iRNA_m5C:0.999535501438844 16016 chr20 44513063 44513063 1 + G A rs544237662 44513056 + 44513036 44513076 41 CCGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCTGCTCA CCGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCTGCTCA < 41bp 1 0.685732810478199 1 0.366114795207977 experiment 0.628534379043602 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513056 chr20:44513063 . . 0 28 hm5C_associated_SNPs_14240 0 0 0 0 0 nucleus 1 0.500231643916798 1 0.999536712166403 hm5C_site_16016 DeepMRMD:1;iRNA_m5C:0.999536712166403 16017 chr20 44513289 44513289 1 + T C rs6094223 44513286 + 44513266 44513306 41 GCTGGGATTACAGGCGTGAGCCATCGCACCCGGCCTGTTTT GCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTGTTTT < 41bp 1 0.416522478969735 1 0.0994735360145569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513286 chr20:44513289 . . 0 24 hm5C_associated_SNPs_14242 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16017 DeepMRMD:1;iRNA_m5C:0.999536712157815 16018 chr20 44513289 44513289 1 + T C rs6094223 44513287 + 44513267 44513307 41 CTGGGATTACAGGCGTGAGCCATCGCACCCGGCCTGTTTTA CTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTGTTTTA < 41bp 1 0.698158023045219 1 0.758675158023834 experiment 0.603683953909561 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513287 chr20:44513289 . . 0 23 hm5C_associated_SNPs_14243 0 0 1 0 0 nucleus 1 0.500231640190022 0.482649683952332 0.999536719619956 hm5C_site_16018 DeepMRMD:0.482649683952332;iRNA_m5C:0.999536719619956 16019 chr20 44513289 44513289 1 + T C rs6094223 44513290 + 44513270 44513310 41 GGATTACAGGCGTGAGCCATCGCACCCGGCCTGTTTTAACA GGATTACAGGCGTGAGCCACCGCACCCGGCCTGTTTTAACA < 41bp 1 0.489424205932054 1 0.638962864875793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513290 chr20:44513289 . . 0 20 hm5C_associated_SNPs_14244 0 0 1 0 0 nucleus 1 0.500231643921092 0.722074270248414 0.999536712157815 hm5C_site_16019 DeepMRMD:0.722074270248414;iRNA_m5C:0.999536712157815 16020 chr20 44513624 44513624 1 + A G rs73308375 44513612 + 44513592 44513632 41 AGTAGGCCAAGATCCTGCTGCCACTGCACTCCAGCCTGGGA AGTAGGCCAAGATCCTGCTGCCACTGCACTCCGGCCTGGGA < 41bp 1 0.26628393953344 1 0.0796193778514862 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513612 chr20:44513624 . . 0 33 hm5C_associated_SNPs_14245 0 0 1 0 0 nucleus 1 0.500231643917515 1 0.99953671216497 hm5C_site_16020 DeepMRMD:1;iRNA_m5C:0.99953671216497 16021 chr20 44513624 44513624 1 + A G rs73308375 44513613 + 44513593 44513633 41 GTAGGCCAAGATCCTGCTGCCACTGCACTCCAGCCTGGGAG GTAGGCCAAGATCCTGCTGCCACTGCACTCCGGCCTGGGAG < 41bp 1 0.537735518172878 1 0.114196598529816 experiment 0.924528963654245 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513613 chr20:44513624 . . 0 32 hm5C_associated_SNPs_14246 0 0 1 0 0 nucleus 1 0.500231663173354 1 0.999536673653292 hm5C_site_16021 DeepMRMD:1;iRNA_m5C:0.999536673653292 16022 chr20 44513624 44513624 1 + A G rs73308375 44513618 + 44513598 44513638 41 CCAAGATCCTGCTGCCACTGCACTCCAGCCTGGGAGGGTGA CCAAGATCCTGCTGCCACTGCACTCCGGCCTGGGAGGGTGA < 41bp 1 0.257612975473522 1 0.129730731248856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513618 chr20:44513624 . . 0 27 hm5C_associated_SNPs_14247 0 0 1 0 0 nucleus 1 0.500231644044451 1 0.999536711911098 hm5C_site_16022 DeepMRMD:1;iRNA_m5C:0.999536711911098 16023 chr20 44513624 44513624 1 + A G rs73308375 44513620 + 44513600 44513640 41 AAGATCCTGCTGCCACTGCACTCCAGCCTGGGAGGGTGAGA AAGATCCTGCTGCCACTGCACTCCGGCCTGGGAGGGTGAGA < 41bp 1 0.55089269865963 1 0.517090499401093 experiment 0.898214602680739 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513620 chr20:44513624 . . 0 25 hm5C_associated_SNPs_14248 0 0 1 0 0 nucleus 1 0.500231644172621 0.965819001197814 0.999536711654757 hm5C_site_16023 DeepMRMD:0.965819001197814;iRNA_m5C:0.999536711654757 16024 chr20 44513624 44513624 1 + A G rs73308375 44513622 + 44513602 44513642 41 GATCCTGCTGCCACTGCACTCCAGCCTGGGAGGGTGAGACT GATCCTGCTGCCACTGCACTCCGGCCTGGGAGGGTGAGACT < 41bp 1 0.571992934415059 1 0.746663510799408 experiment 0.856014131169881 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513622 chr20:44513624 . . 0 23 hm5C_associated_SNPs_14249 0 0 1 0 0 nucleus 1 0.500231643921022 0.506672978401184 0.999536712157957 hm5C_site_16024 DeepMRMD:0.506672978401184;iRNA_m5C:0.999536712157957 16025 chr20 44513624 44513624 1 + A G rs73308375 44513623 + 44513603 44513643 41 ATCCTGCTGCCACTGCACTCCAGCCTGGGAGGGTGAGACTC ATCCTGCTGCCACTGCACTCCGGCCTGGGAGGGTGAGACTC < 41bp 1 0.502444735482184 1 0.78401792049408 experiment 0.995110529035632 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513623 chr20:44513624 . . 0 22 hm5C_associated_SNPs_14250 0 0 1 0 0 nucleus 1 0.500231643857268 0.43196415901184 0.999536712285463 hm5C_site_16025 DeepMRMD:0.43196415901184;iRNA_m5C:0.999536712285463 16026 chr20 44513624 44513624 1 + A G rs73308375 44513626 + 44513606 44513646 41 CTGCTGCCACTGCACTCCAGCCTGGGAGGGTGAGACTCCAT CTGCTGCCACTGCACTCCGGCCTGGGAGGGTGAGACTCCAT < 41bp 1 0.369249171001034 1 0.353350281715393 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSWIM1 ENSG00000168612 UTR3 Human protein_coding chr20:44513626 chr20:44513624 . . 0 19 hm5C_associated_SNPs_14251 0 0 1 0 0 nucleus 1 0.500231643937242 1 0.999536712125515 hm5C_site_16026 DeepMRMD:1;iRNA_m5C:0.999536712125515 16027 chr20 45362589 45362589 1 + C T rs377528530 45362582 + 45362562 45362602 41 AGCTGGTCTTTTGGGAGTGGCCCCTGCCCCCAAAGGTGGTC AGCTGGTCTTTTGGGAGTGGCCCCTGCTCCCAAAGGTGGTC < 41bp 1 0.171652884212413 1 0.114597737789154 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC2A10 ENSG00000197496 UTR3 Human protein_coding chr20:45362582 chr20:45362589 . . 0 28 hm5C_associated_SNPs_14253 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16027 DeepMRMD:1;iRNA_m5C:0.999536712157815 16028 chr20 45362597 45362597 1 + G T rs532980823 45362582 + 45362562 45362602 41 AGCTGGTCTTTTGGGAGTGGCCCCTGCCCCCAAAGGTGGTC AGCTGGTCTTTTGGGAGTGGCCCCTGCCCCCAAAGTTGGTC < 41bp 1 0.161676899028913 1 0.119760602712631 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC2A10 ENSG00000197496 UTR3 Human protein_coding chr20:45362582 chr20:45362597 . . 0 36 hm5C_associated_SNPs_14254 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16028 DeepMRMD:1;iRNA_m5C:0.999536712157815 16029 chr20 45817255 45817255 1 + A C rs1046667 45817258 + 45817238 45817278 41 TCTAATGTAAGCACTCTATTCTCCAAGTTGTGCTTTGTGGG TCTAATGTAAGCACTCTCTTCTCCAAGTTGTGCTTTGTGGG < 41bp 1 0.461101087698262 1 0.931976914405823 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA2 ENSG00000064655 UTR3 Human protein_coding chr20:45817258 chr20:45817255 . . 0 18 hm5C_associated_SNPs_14255 0 0 1 0 0 Endoplasmic reticulum 1 0.500232036750373 0.136046171188354 0.999535926499255 hm5C_site_16029 DeepMRMD:0.136046171188354;iRNA_m5C:0.999535926499255 16030 chr20 45817263 45817263 1 + A G rs149054416 45817258 + 45817238 45817278 41 TCTAATGTAAGCACTCTATTCTCCAAGTTGTGCTTTGTGGG TCTAATGTAAGCACTCTATTCTCCAGGTTGTGCTTTGTGGG < 41bp 1 0.591149144595233 1 0.920658528804779 experiment 0.817701710809535 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA2 ENSG00000064655 UTR3 Human protein_coding chr20:45817258 chr20:45817263 . . 0 26 hm5C_associated_SNPs_14256 0 0 0 1 0 Endoplasmic reticulum 1 0.50023164392116 0.158682942390442 0.99953671215768 hm5C_site_16030 DeepMRMD:0.158682942390442;iRNA_m5C:0.99953671215768 16031 chr20 47641909 47641909 1 + C T rs573838411 47641892 + 47641872 47641912 41 TCCACATAGAGACGGAGGATCAGGGCATGTATAAGTACATG TCCACATAGAGACGGAGGATCAGGGCATGTATAAGTATATG < 41bp 1 0.542164675984585 1 0.80017763376236 experiment 0.915670648030829 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47641892 chr20:47641909 synonymous SNV . 0 38 hm5C_associated_SNPs_14257 0 0 0 0 1 Cytosol 1 0.500231643921186 0.39964473247528 0.999536712157628 hm5C_site_16031 DeepMRMD:0.39964473247528;iRNA_m5C:0.999536712157628 16032 chr20 47859217 47859217 1 + G A rs1130146 47859198 + 47859178 47859218 41 ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCGAGCTGG ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCGAGCTAG < 41bp 1 0.219860576150056 1 0.220712780952454 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX27 ENSG00000124228 CDS Human protein_coding chr20:47859198 chr20:47859217 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_14258 0 0 0 0 2 chromatin 1 0.500224923300969 1 0.999550153398062 hm5C_site_16032 DeepMRMD:1;iRNA_m5C:0.999550153398062 16033 chr20 47895196 47895196 1 + C T rs188154930 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGTCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG < 41bp 1 0.0604302826652249 1 0.0891728699207306 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895196 . . 0 7 hm5C_associated_SNPs_14259 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16033 DeepMRMD:1;iRNA_m5C:0.999536712157815 16034 chr20 47895197 47895197 1 + C A rs479474 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCACGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG < 41bp 1 0.0737985630845806 1 0.0692265927791595 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895197 . . 0 8 hm5C_associated_SNPs_14260 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16034 DeepMRMD:1;iRNA_m5C:0.999536712157815 16035 chr20 47895198 47895198 1 + C G rs479473 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCGGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG < 41bp 1 0.0795183926062815 1 0.0940778851509094 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895198 . . 0 9 hm5C_associated_SNPs_14261 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16035 DeepMRMD:1;iRNA_m5C:0.999536712157815 16036 chr20 47895201 47895201 1 + A G rs28362648 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCCGGGGTGTGGTACTTCTCCTAGTTGCAGTCAGG < 41bp 1 0.0770312137606593 1 0.122182220220566 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895201 . . 0 12 hm5C_associated_SNPs_14262 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16036 DeepMRMD:1;iRNA_m5C:0.999536712157815 16037 chr20 47895215 47895215 1 + C A rs3818070 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCCGGAGTGTGGTACTTCTACTAGTTGCAGTCAGG < 41bp 1 0.0747391348362042 1 0.0978684723377228 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895215 . . 0 26 hm5C_associated_SNPs_14263 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16037 DeepMRMD:1;iRNA_m5C:0.999536712157815 16038 chr20 47895218 47895218 1 + A C rs3818071 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCCGGAGTGTGGTACTTCTCCTCGTTGCAGTCAGG < 41bp 1 0.0692823526746268 1 0.116660267114639 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895218 . . 0 29 hm5C_associated_SNPs_14264 0 0 1 0 2 unknown 1 0.500231650198132 1 0.999536699603735 hm5C_site_16038 DeepMRMD:1;iRNA_m5C:0.999536699603735 16039 chr20 47895559 47895559 1 + C T rs140365533 47895553 + 47895533 47895573 41 TTATATTTTGCCAGTTAGTTCTGATACATCGGCCTCAAAAG TTATATTTTGCCAGTTAGTTCTGATATATCGGCCTCAAAAG < 41bp 1 0.379180065976571 1 0.0841898322105408 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895553 chr20:47895559 . . 0 27 hm5C_associated_SNPs_14265 0 0 1 2 0 unknown 1 0.500231643928071 1 0.999536712143859 hm5C_site_16039 DeepMRMD:1;iRNA_m5C:0.999536712143859 16040 chr20 47896907 47896907 1 + A C rs116993790 47896887 + 47896867 47896907 41 TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGA TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGC < 41bp 1 0.0651505394204513 1 0.0899316370487213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896887 chr20:47896907 . . 0 41 hm5C_associated_SNPs_14266 0 0 1 5 0 unknown 1 0.500231644434039 1 0.999536711131922 hm5C_site_16040 DeepMRMD:1;iRNA_m5C:0.999536711131922 16041 chr20 47896907 47896907 1 + A C rs116993790 47896899 + 47896879 47896919 41 TTTTTTCCCCGACAGATCGACTATGTTGATCTAACTTTTCT TTTTTTCCCCGACAGATCGACTATGTTGCTCTAACTTTTCT < 41bp 1 0.124669224516164 1 0.0930370092391968 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896899 chr20:47896907 . . 0 29 hm5C_associated_SNPs_14267 0 0 1 5 0 unknown 1 0.500231648636308 1 0.999536702727384 hm5C_site_16041 DeepMRMD:1;iRNA_m5C:0.999536702727384 16042 chr20 47896907 47896907 1 + A C rs116993790 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGCTCTAACTTTTCTAAGCCAGTTT < 41bp 1 0.0873736562070679 1 0.0832721889019012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896907 . . 0 19 hm5C_associated_SNPs_14268 0 0 1 5 0 unknown 1 0.500231647916441 1 0.999536704167117 hm5C_site_16042 DeepMRMD:1;iRNA_m5C:0.999536704167117 16043 chr20 49126926 49126926 1 + A C rs377261839 49126935 + 49126915 49126955 41 TTGACATGAAGAAGCAGCAGCGGCTAGGGCGGCGGTAGCTG TTGACATGAAGCAGCAGCAGCGGCTAGGGCGGCGGTAGCTG < 41bp 1 0.672292597287662 1 0.208720952272415 experiment 0.655414805424675 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN1 ENSG00000196396 UTR5 Human protein_coding chr20:49126935 chr20:49126926 . . 0 12 hm5C_associated_SNPs_14269 0 0 1 0 0 Ribosome 1 0.500231644606641 1 0.999536710786718 hm5C_site_16043 DeepMRMD:1;iRNA_m5C:0.999536710786718 16044 chr20 49126945 49126945 1 + G C rs539796974 49126935 + 49126915 49126955 41 TTGACATGAAGAAGCAGCAGCGGCTAGGGCGGCGGTAGCTG TTGACATGAAGAAGCAGCAGCGGCTAGGGCCGCGGTAGCTG < 41bp 1 0.653933126581455 1 0.25160676240921 experiment 0.692133746837091 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN1 ENSG00000196396 UTR5 Human protein_coding chr20:49126935 chr20:49126945 . . 0 31 hm5C_associated_SNPs_14271 0 0 1 0 0 Ribosome 1 0.50023164392966 1 0.999536712140681 hm5C_site_16044 DeepMRMD:1;iRNA_m5C:0.999536712140681 16045 chr20 55088404 55088404 1 + A G rs1059768 55088403 + 55088383 55088423 41 TTCCAGGAGGATGATGTCATCATGCTCAATGGCACCAAGGA TTCCAGGAGGATGATGTCATCGTGCTCAATGGCACCAAGGA < 41bp 1 0.525109639936458 1 0.695362329483032 experiment 0.949780720127083 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55088403 chr20:55088404 nonsynonymous SNV 0.988 0 22 hm5C_associated_SNPs_14273 0 1 1 0 1 Ribosome 1 0.500231700435094 0.609275341033936 0.999536599129812 hm5C_site_16045 DeepMRMD:0.609275341033936;iRNA_m5C:0.999536599129812 16046 chr20 55206615 55206615 1 + G A rs76833551 55206625 + 55206605 55206645 41 GGAGGCGGGCGCGGTGAGCGCCCGCAGGGATGCCTACCGCC GGAGGCGGGCACGGTGAGCGCCCGCAGGGATGCCTACCGCC < 41bp 1 0.643070308006429 1 0.626375138759613 experiment 0.713859383987141 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55206625 chr20:55206615 nonsynonymous SNV 0.212 1 11 hm5C_associated_SNPs_14275 0 0 0 0 0 Cytosol 1 0.500231643921102 0.747249722480774 0.999536712157795 hm5C_site_16046 DeepMRMD:0.747249722480774;iRNA_m5C:0.999536712157795 16047 chr20 55983276 55983276 1 + G T rs183032351 55983294 + 55983274 55983314 41 CAGCCCCTGGCTGCCCTGGACTGTGCAGAGATGCCTGACTC CATCCCCTGGCTGCCCTGGACTGTGCAGAGATGCCTGACTC < 41bp 1 0.395309508587721 1 0.240029364824295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM38 ENSG00000132819 UTR3 Human protein_coding chr20:55983294 chr20:55983276 . . 0 3 hm5C_associated_SNPs_14277 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_16047 DeepMRMD:1;iRNA_m5C:0.999536712157815 16048 chr20 55983279 55983279 1 + C A rs11546712 55983294 + 55983274 55983314 41 CAGCCCCTGGCTGCCCTGGACTGTGCAGAGATGCCTGACTC CAGCCACTGGCTGCCCTGGACTGTGCAGAGATGCCTGACTC < 41bp 1 0.376275460450386 1 0.189433872699738 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM38 ENSG00000132819 UTR3 Human protein_coding chr20:55983294 chr20:55983279 . . 0 6 hm5C_associated_SNPs_14278 0 0 1 0 0 Ribosome 1 0.500231643676416 1 0.999536712647168 hm5C_site_16048 DeepMRMD:1;iRNA_m5C:0.999536712647168 16049 chr20 56935016 56935016 1 + C T rs41310825 56935005 + 56934985 56935025 41 ATCGTTGGCTTTTGACCTTGCTGAAAAGGAACATATAATTG ATCGTTGGCTTTTGACCTTGCTGAAAAGGAATATATAATTG < 41bp 1 0.565005905098256 1 0.696749210357666 experiment 0.869988189803489 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB22A ENSG00000124209 UTR3 Human protein_coding chr20:56935005 chr20:56935016 . . 0 32 hm5C_associated_SNPs_14280 0 0 1 0 0 Ribosome 1 0.500231643974417 0.606501579284668 0.999536712051167 hm5C_site_16049 DeepMRMD:0.606501579284668;iRNA_m5C:0.999536712051167 16050 chr20 57023850 57023850 1 + A G rs73296848 57023855 + 57023835 57023875 41 AGTGAAAAAAGGTACATATTCCATTTTCTCATTGCCTGAAG AGTGAAAAAAGGTACGTATTCCATTTTCTCATTGCCTGAAG < 41bp 1 0.142717372736263 1 0.233922481536865 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VAPB ENSG00000124164 UTR3 Human protein_coding chr20:57023855 chr20:57023850 . . 0 16 hm5C_associated_SNPs_14281 2 0 1 0 0 Ribosome 1 0.500138175549766 1 0.999723648900467 hm5C_site_16050 DeepMRMD:1;iRNA_m5C:0.999723648900467 Spinal Muscular Atrophy, Dominant Spinal Muscular Atrophy, Dominant 16051 chr20 57253890 57253890 1 + G C rs75424783 57253901 + 57253881 57253921 41 GGTACCTCAGGGTTTCTTTCCCTTTACTCGCTGGCAGCCAT GGTACCTCACGGTTTCTTTCCCTTTACTCGCTGGCAGCCAT < 41bp 1 0.0401514573218626 1 0.0919118821620941 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STX16-NPEPL1 ENSG00000124222 UTR3 Human protein_coding chr20:57253901 chr20:57253890 . . 0 10 hm5C_associated_SNPs_14282 1 0 1 0 0 exosome 1 0.500231656977694 1 0.999536686044612 hm5C_site_16051 DeepMRMD:1;iRNA_m5C:0.999536686044612 Pseudohypoaldosteronism, Type I, Dominant Pseudohypoaldosteronism, Type I, Dominant 16052 chr20 57289645 57289645 1 + T C rs116074533 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCCGGCCTC < 41bp 1 0.429884381749543 1 0.308743000030518 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289645 synonymous SNV . 0 35 hm5C_associated_SNPs_14284 0 0 1 0 2 cytosol 1 0.500231643920789 1 0.999536712158422 hm5C_site_16052 DeepMRMD:1;iRNA_m5C:0.999536712158422 16053 chr20 57466790 57466790 1 + C T rs200810763 57466771 + 57466751 57466791 41 CCGGCCGCGCCCCGCCGCCGCCGCCGCCGCCATGGGCTGCC CCGGCCGCGCCCCGCCGCCGCCGCCGCCGCCATGGGCTGTC < 41bp 1 0.325680782419026 1 0.18599197268486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57466771 chr20:57466790 synonymous SNV . 0 40 hm5C_associated_SNPs_14286 0 0 1 0 0 Cytosol 1 0.500231644277034 1 0.999536711445931 hm5C_site_16053 DeepMRMD:1;iRNA_m5C:0.999536711445931 16054 chr20 57478807 57478807 1 + C G rs7121 57478822 + 57478802 57478842 41 TACATCCTGAGTGTGATGAACGTGCCTGACTTTGACTTCCC TACATGCTGAGTGTGATGAACGTGCCTGACTTTGACTTCCC < 41bp 1 0.260657050665942 1 0.0425751805305481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478822 chr20:57478807 nonsynonymous SNV 0.972 4 6 hm5C_associated_SNPs_14287 0 0 1 0 2 Cytosol 1 0.500231643921091 1 0.999536712157817 hm5C_site_16054 DeepMRMD:1;iRNA_m5C:0.999536712157817 16055 chr20 57478846 57478846 1 + C G rs11554266 57478840 + 57478820 57478860 41 AACGTGCCTGACTTTGACTTCCCTCCCGTAAGCTACACCCC AACGTGCCTGACTTTGACTTCCCTCCGGTAAGCTACACCCC < 41bp 1 0.0636804459536286 1 0.0748854577541351 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478840 chr20:57478846 synonymous SNV . 0 27 hm5C_associated_SNPs_14288 0 0 1 2 1 Cytosol 1 0.500231643922421 1 0.999536712155157 hm5C_site_16055 DeepMRMD:1;iRNA_m5C:0.999536712155157 16056 chr20 58519609 58519609 1 + G T rs148436563 58519610 + 58519590 58519630 41 TGTGAAAAAGCAAAGGGGGGCAAAGCAAGGCCCCCCACTGC TGTGAAAAAGCAAAGGGGGTCAAAGCAAGGCCCCCCACTGC < 41bp 1 0.616104973483078 1 0.681026935577393 experiment 0.767790053033843 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519610 chr20:58519609 nonsynonymous SNV 0.002 0 20 hm5C_associated_SNPs_14289 0 0 0 0 0 Cytosol 1 0.500231643921092 0.637946128845214 0.999536712157815 hm5C_site_16056 DeepMRMD:0.637946128845214;iRNA_m5C:0.999536712157815 16057 chr20 58519609 58519609 1 + G T rs148436563 58519620 + 58519600 58519640 41 CAAAGGGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACC CAAAGGGGGTCAAAGCAAGGCCCCCCACTGCCCCTGGGACC < 41bp 1 0.143963163106978 1 0.164607524871826 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519620 chr20:58519609 nonsynonymous SNV 0.002 0 10 hm5C_associated_SNPs_14290 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16057 DeepMRMD:1;iRNA_m5C:0.999536712157815 16058 chr20 58519609 58519609 1 + G T rs148436563 58519621 + 58519601 58519641 41 AAAGGGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACCT AAAGGGGGTCAAAGCAAGGCCCCCCACTGCCCCTGGGACCT < 41bp 1 0.165834873784038 1 0.139057844877243 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519621 chr20:58519609 nonsynonymous SNV 0.002 0 9 hm5C_associated_SNPs_14291 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16058 DeepMRMD:1;iRNA_m5C:0.999536712157815 16059 chr20 58519609 58519609 1 + G T rs148436563 58519622 + 58519602 58519642 41 AAGGGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTC AAGGGGGTCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTC < 41bp 1 0.615850056132473 1 0.393647283315659 experiment 0.768299887735054 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519622 chr20:58519609 nonsynonymous SNV 0.002 0 8 hm5C_associated_SNPs_14292 0 0 0 0 0 Cytosol 1 0.50023164377831 1 0.99953671244338 hm5C_site_16059 DeepMRMD:1;iRNA_m5C:0.99953671244338 16060 chr20 58519609 58519609 1 + G T rs148436563 58519623 + 58519603 58519643 41 AGGGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTCA AGGGGGTCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTCA < 41bp 1 0.137878501130765 1 0.0480962097644806 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519623 chr20:58519609 nonsynonymous SNV 0.002 0 7 hm5C_associated_SNPs_14293 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16060 DeepMRMD:1;iRNA_m5C:0.999536712157815 16061 chr20 58519609 58519609 1 + G T rs148436563 58519624 + 58519604 58519644 41 GGGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTCAG GGGGGTCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTCAG < 41bp 1 0.198552014583381 1 0.11217001080513 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519624 chr20:58519609 nonsynonymous SNV 0.002 0 6 hm5C_associated_SNPs_14294 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16061 DeepMRMD:1;iRNA_m5C:0.999536712157815 16062 chr20 58519609 58519609 1 + G T rs148436563 58519625 + 58519605 58519645 41 GGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTCAGG GGGGTCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTCAGG < 41bp 1 0.292257215246118 1 0.145577490329742 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519625 chr20:58519609 nonsynonymous SNV 0.002 0 5 hm5C_associated_SNPs_14295 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16062 DeepMRMD:1;iRNA_m5C:0.999536712157815 16063 chr20 58519926 58519926 1 + G A rs113464598 58519940 + 58519920 58519960 41 CTGTCCGGCAGTGGAAGCAGCTCTAAGGTGGAAACCAGCGG CTGTCCAGCAGTGGAAGCAGCTCTAAGGTGGAAACCAGCGG < 41bp 1 0.692182586855373 1 0.687158584594727 experiment 0.615634826289254 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519940 chr20:58519926 nonsynonymous SNV 0.003 0 7 hm5C_associated_SNPs_14296 0 0 1 0 0 Cytosol 1 0.500231643921084 0.625682830810546 0.999536712157833 hm5C_site_16063 DeepMRMD:0.625682830810546;iRNA_m5C:0.999536712157833 16064 chr20 60703746 60703746 1 + G A rs79497534 60703730 + 60703710 60703750 41 GCAGGCAGTGCTGTGTTTGTCTCCCGGACATGCTGAGTGAG GCAGGCAGTGCTGTGTTTGTCTCCCGGACATGCTGAATGAG < 41bp 1 0.576328805780925 1 0.75840437412262 experiment 0.847342388438149 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LSM14B ENSG00000149657 intronic Human protein_coding chr20:60703730 chr20:60703746 . . 0 37 hm5C_associated_SNPs_14297 0 0 1 0 0 Ribosome 1 0.500231643916008 0.48319125175476 0.999536712167983 hm5C_site_16064 DeepMRMD:0.48319125175476;iRNA_m5C:0.999536712167983 16065 chr20 60776717 60776717 1 + C T rs376233664 60776714 + 60776694 60776734 41 GGATGCAAGTCCAGGCAGAGCGGCGCAGGCAGCTGTGAGCT GGATGCAAGTCCAGGCAGAGCGGTGCAGGCAGCTGTGAGCT < 41bp 1 0.652403787081472 1 0.428146034479141 experiment 0.695192425837057 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTG2 ENSG00000101181 UTR3 Human protein_coding chr20:60776714 chr20:60776717 . . 0 24 hm5C_associated_SNPs_14298 0 0 1 0 0 Ribosome 1 0.500231682993217 1 0.999536634013566 hm5C_site_16065 DeepMRMD:1;iRNA_m5C:0.999536634013566 16066 chr20 60870300 60870300 1 + G A rs115985942 60870287 + 60870267 60870307 41 CAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTGGCC CAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCTGGCC < 41bp 1 0.652774648344889 1 0.525081872940063 experiment 0.694450703310222 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSBPL2 ENSG00000130703 UTR3 Human protein_coding chr20:60870287 chr20:60870300 . . 0 34 hm5C_associated_SNPs_14299 0 0 1 0 0 Ribosome 1 0.500231630011391 0.949836254119874 0.999536739977217 hm5C_site_16066 DeepMRMD:0.949836254119874;iRNA_m5C:0.999536739977217 16067 chr20 60881309 60881309 1 + C T rs535044424 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA TAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA < 41bp 1 0.244589313394031 1 0.456413567066193 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881309 synonymous SNV . 0 1 hm5C_associated_SNPs_14302 0 0 1 0 2 Ribosome 1 0.500231643921095 1 0.999536712157811 hm5C_site_16067 DeepMRMD:1;iRNA_m5C:0.999536712157811 16068 chr20 60881330 60881330 1 + G A rs2427273 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA CAACCCCCCGATGCCTGGGGCACTGGGGGCCAGCGGAAGCA < 41bp 1 0.199967220711115 1 0.230730146169662 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881330 synonymous SNV . 0 22 hm5C_associated_SNPs_14303 0 0 1 0 2 Ribosome 1 0.500231643810814 1 0.999536712378372 hm5C_site_16068 DeepMRMD:1;iRNA_m5C:0.999536712378372 16069 chr20 60882667 60882667 1 + G A rs36021300 60882662 + 60882642 60882682 41 CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCCCG CTCTTCGCAGCTCCCGGAGCCAGTCAGCAGCGGTCACCCCG < 41bp 1 0.256418460769739 1 0.303906500339508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882662 chr20:60882667 synonymous SNV . 0 26 hm5C_associated_SNPs_14304 0 0 1 0 1 Ribosome 1 0.500231643921644 1 0.999536712156712 hm5C_site_16069 DeepMRMD:1;iRNA_m5C:0.999536712156712 16070 chr20 60882747 60882747 1 + C A rs79836754 60882762 + 60882742 60882782 41 AGCAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAG AGCAAATAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAG < 41bp 1 0.32885290905957 1 0.376682996749878 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882762 chr20:60882747 nonsynonymous SNV 0.071 1 6 hm5C_associated_SNPs_14305 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16070 DeepMRMD:1;iRNA_m5C:0.999536712157815 16071 chr20 60882747 60882747 1 + C A rs79836754 60882764 + 60882744 60882784 41 CAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAGCC CAAATAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAGCC < 41bp 1 0.241374391945776 1 0.467606961727142 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882764 chr20:60882747 nonsynonymous SNV 0.071 1 4 hm5C_associated_SNPs_14306 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16071 DeepMRMD:1;iRNA_m5C:0.999536712157815 16072 chr20 60882762 60882762 1 + C A rs200789814 60882764 + 60882744 60882784 41 CAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAGCC CAACTAGCCCGAGCCCCGAGCCCAGTTCCGGGAATGGAGCC < 41bp 1 0.259302321993663 1 0.572503566741943 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882764 chr20:60882762 nonsynonymous SNV 0.194 1 19 hm5C_associated_SNPs_14307 0 0 1 0 0 Ribosome 1 0.500231643921092 0.854992866516114 0.999536712157815 hm5C_site_16072 DeepMRMD:0.854992866516114;iRNA_m5C:0.999536712157815 16073 chr20 60882763 60882763 1 + G A rs115525800 60882762 + 60882742 60882782 41 AGCAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAG AGCAACTAGCCCGAGCCCCGCACCCAGTTCCGGGAATGGAG < 41bp 1 0.245587515222971 1 0.30029159784317 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882762 chr20:60882763 synonymous SNV . 0 22 hm5C_associated_SNPs_14308 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16073 DeepMRMD:1;iRNA_m5C:0.999536712157815 16074 chr20 60882763 60882763 1 + G A rs115525800 60882764 + 60882744 60882784 41 CAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAGCC CAACTAGCCCGAGCCCCGCACCCAGTTCCGGGAATGGAGCC < 41bp 1 0.281771406851819 1 0.493960559368134 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882764 chr20:60882763 synonymous SNV . 0 20 hm5C_associated_SNPs_14309 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16074 DeepMRMD:1;iRNA_m5C:0.999536712157815 16075 chr20 60962188 60962188 1 + A G rs192374410 60962176 + 60962156 60962196 41 CTTCCTTTCTCTCTCGCGCGCGGTGTGGTGGCAGCAGGTGT CTTCCTTTCTCTCTCGCGCGCGGTGTGGTGGCGGCAGGTGT < 41bp 1 0.646723048112905 1 0.583650350570679 experiment 0.706553903774189 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS21 ENSG00000171858 UTR5 Human protein_coding chr20:60962176 chr20:60962188 . . 0 33 hm5C_associated_SNPs_14310 0 0 1 0 1 Cytosol 1 0.500231685038542 0.832699298858642 0.999536629922916 hm5C_site_16075 DeepMRMD:0.832699298858642;iRNA_m5C:0.999536629922916 16076 chr20 60963542 60963542 1 + T G rs114402901 60963554 + 60963534 60963574 41 CACAGATGTGGAATATTTGTCATAAATAAATAATGAAAACC CACAGATGGGGAATATTTGTCATAAATAAATAATGAAAACC < 41bp 1 0.519018559962811 1 0.306372821331024 experiment 0.961962880074378 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS21 ENSG00000171858 UTR3 Human protein_coding chr20:60963554 chr20:60963542 . . 0 9 hm5C_associated_SNPs_14311 0 0 1 2 1 Cytosol 1 0.500231644154042 1 0.999536711691915 hm5C_site_16076 DeepMRMD:1;iRNA_m5C:0.999536711691915 16077 chr20 61439097 61439097 1 + C T rs41309385 61439087 + 61439067 61439107 41 CCACAGTTCTGGGCAGGACCCTGCCTGGGGCACAGCCTGGT CCACAGTTCTGGGCAGGACCCTGCCTGGGGTACAGCCTGGT < 41bp 1 0.411812407903878 1 0.249735474586487 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFR ENSG00000060491 UTR5 Human protein_coding chr20:61439087 chr20:61439097 . . 0 31 hm5C_associated_SNPs_14312 0 0 0 0 0 Ribosome 1 0.50023164392063 1 0.999536712158739 hm5C_site_16077 DeepMRMD:1;iRNA_m5C:0.999536712158739 16078 chr20 61439428 61439428 1 + C G rs529359972 61439434 + 61439414 61439454 41 CTGGGGCTTGGAGGCAGCTGCTGTCCTCTGAATGGCCCCCA CTGGGGCTTGGAGGGAGCTGCTGTCCTCTGAATGGCCCCCA < 41bp 1 0.421698159485986 1 0.506177008152008 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGFR ENSG00000060491 UTR5 Human protein_coding chr20:61439434 chr20:61439428 . . 0 15 hm5C_associated_SNPs_14313 0 0 1 0 0 Ribosome 1 0.500231643921093 0.987645983695984 0.999536712157814 hm5C_site_16078 DeepMRMD:0.987645983695984;iRNA_m5C:0.999536712157814 16079 chr20 61449905 61449905 1 + G A rs567371176 61449900 + 61449880 61449920 41 GTCCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGC GTCCTCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGC < 41bp 1 0.0973939315307702 1 0.0901413559913635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449900 chr20:61449905 synonymous SNV . 0 26 hm5C_associated_SNPs_14314 0 0 1 0 2 Cytosol 1 0.500231643922122 1 0.999536712155757 hm5C_site_16079 DeepMRMD:1;iRNA_m5C:0.999536712155757 16080 chr20 61449905 61449905 1 + G A rs567371176 61449901 + 61449881 61449921 41 TCCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCT TCCTCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGCT < 41bp 1 0.375975521530644 1 0.368972808122635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449901 chr20:61449905 synonymous SNV . 0 25 hm5C_associated_SNPs_14315 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16080 DeepMRMD:1;iRNA_m5C:0.999536712157815 16081 chr20 61449905 61449905 1 + G A rs567371176 61449902 + 61449882 61449922 41 CCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTG CCTCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGCTG < 41bp 1 0.312374157998587 1 0.373440802097321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449902 chr20:61449905 synonymous SNV . 0 24 hm5C_associated_SNPs_14316 0 0 1 0 2 Cytosol 1 0.500231643923401 1 0.999536712153197 hm5C_site_16081 DeepMRMD:1;iRNA_m5C:0.999536712153197 16082 chr20 61449905 61449905 1 + G A rs567371176 61449903 + 61449883 61449923 41 CTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGG CTCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGCTGG < 41bp 1 0.200918738851138 1 0.279969990253448 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449903 chr20:61449905 synonymous SNV . 0 23 hm5C_associated_SNPs_14317 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16082 DeepMRMD:1;iRNA_m5C:0.999536712157815 16083 chr20 61449905 61449905 1 + G A rs567371176 61449904 + 61449884 61449924 41 TCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGGG TCCAGGTCTGCCTGGGCCCCCAGTGAGTGTCCCTGGCTGGG < 41bp 1 0.283075101072302 1 0.482876837253571 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449904 chr20:61449905 synonymous SNV . 0 22 hm5C_associated_SNPs_14318 0 0 1 0 2 Cytosol 1 0.500231643921462 1 0.999536712157077 hm5C_site_16083 DeepMRMD:1;iRNA_m5C:0.999536712157077 16084 chr20 61450599 61450599 1 + C G rs143307835 61450587 + 61450567 61450607 41 TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAC TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCGGGGGAAAC < 41bp 1 0.330361659290722 1 0.0920256376266479 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450587 chr20:61450599 nonsynonymous SNV 0.971 2 33 hm5C_associated_SNPs_14319 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16084 DeepMRMD:1;iRNA_m5C:0.999536712157815 16085 chr20 61450599 61450599 1 + C G rs143307835 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAAGGGGGCCCCAGGAAAGCGGGGGAAACC < 41bp 1 0.195385105785008 1 0.1876120865345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450599 nonsynonymous SNV 0.971 2 32 hm5C_associated_SNPs_14320 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16085 DeepMRMD:1;iRNA_m5C:0.999536712157815 16086 chr20 61595026 61595026 1 + C T rs199720748 61595023 + 61595003 61595043 41 TTCTTCGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGGGG TTCTTCGAGGAGACCTTCCCCGATGCCAAGGTGAGTCGGGG < 41bp 1 0.290426770869877 1 0.401627987623215 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61595023 chr20:61595026 synonymous SNV . 0 24 hm5C_associated_SNPs_14321 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16086 DeepMRMD:1;iRNA_m5C:0.999536712157815 16087 chr20 62152155 62152155 1 + G A rs547337063 62152156 + 62152136 62152176 41 TGTCGTGGCGCGGCTTCCCGCGGTCTTCTCTGCAAATGGGC TGTCGTGGCGCGGCTTCCCACGGTCTTCTCTGCAAATGGGC < 41bp 1 0.380699875581874 1 0.492642015218735 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPDPF ENSG00000125534 UTR5 Human protein_coding chr20:62152156 chr20:62152155 . . 0 20 hm5C_associated_SNPs_14322 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16087 DeepMRMD:1;iRNA_m5C:0.999536712157815 16088 chr20 62152157 62152157 1 + G A rs310625 62152156 + 62152136 62152176 41 TGTCGTGGCGCGGCTTCCCGCGGTCTTCTCTGCAAATGGGC TGTCGTGGCGCGGCTTCCCGCAGTCTTCTCTGCAAATGGGC < 41bp 1 0.313321104109761 1 0.281545668840408 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPDPF ENSG00000125534 UTR5 Human protein_coding chr20:62152156 chr20:62152157 . . 0 22 hm5C_associated_SNPs_14323 0 0 1 0 1 Cytosol 1 0.500231643926082 1 0.999536712147836 hm5C_site_16088 DeepMRMD:1;iRNA_m5C:0.999536712147836 16089 chr20 62305406 62305406 1 + T C rs6010616 62305411 + 62305391 62305431 41 GGCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCGG GGCAGCGCAGCAGGGCGAGCCCCACCCGGAGTTCAGCGCGG < 41bp 1 0.0820706731540214 1 0.270367920398712 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62305411 chr20:62305406 synonymous SNV . 0 16 hm5C_associated_SNPs_14324 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16089 DeepMRMD:1;iRNA_m5C:0.999536712157815 16090 chr20 62305406 62305406 1 + T C rs6010616 62305412 + 62305392 62305432 41 GCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCGGA GCAGCGCAGCAGGGCGAGCCCCACCCGGAGTTCAGCGCGGA < 41bp 1 0.121229756713339 1 0.129518181085587 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62305412 chr20:62305406 synonymous SNV . 0 15 hm5C_associated_SNPs_14325 0 0 1 0 0 chromatin 1 0.500234337342304 1 0.999531325315393 hm5C_site_16090 DeepMRMD:1;iRNA_m5C:0.999531325315393 16091 chr20 62309514 62309514 1 + G A rs41302954 62309512 + 62309492 62309532 41 GCCCAGGGCTGAACATGGAGCTGGAAGACATTGCAAAGCTG GCCCAGGGCTGAACATGGAGCTAGAAGACATTGCAAAGCTG < 41bp 1 0.499488468760957 1 0.482557564973831 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62309512 chr20:62309514 synonymous SNV . 0 23 hm5C_associated_SNPs_14326 0 0 1 0 1 chromatin 1 0.500231643923592 1 0.999536712152817 hm5C_site_16091 DeepMRMD:1;iRNA_m5C:0.999536712152817 16092 chr20 62327317 62327317 1 + C G rs371744822 62327303 + 62327283 62327323 41 ACCCACCCAACAGAATAGGCCAGCCCATGCCAGCCGGCTTG ACCCACCCAACAGAATAGGCCAGCCCATGCCAGCGGGCTTG < 41bp 1 0.237278314040545 1 0.0991323292255402 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTEL1-TNFRSF6B ENSG00000258366 UTR3 Human protein_coding chr20:62327303 chr20:62327317 . . 0 35 hm5C_associated_SNPs_14328 0 0 1 0 0 exosome 1 0.500231643920336 1 0.999536712159328 hm5C_site_16092 DeepMRMD:1;iRNA_m5C:0.999536712159328 16093 chr20 62327323 62327323 1 + G A rs567832149 62327303 + 62327283 62327323 41 ACCCACCCAACAGAATAGGCCAGCCCATGCCAGCCGGCTTG ACCCACCCAACAGAATAGGCCAGCCCATGCCAGCCGGCTTA < 41bp 1 0.257009038424743 1 0.102234452962875 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTEL1-TNFRSF6B ENSG00000258366 UTR3 Human protein_coding chr20:62327303 chr20:62327323 . . 0 41 hm5C_associated_SNPs_14329 0 0 1 0 0 exosome 1 0.500231643921089 1 0.999536712157823 hm5C_site_16093 DeepMRMD:1;iRNA_m5C:0.999536712157823 16094 chr20 62373343 62373343 1 + G A rs140539992 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCATCACC < 41bp 1 0.0758717010606366 1 0.0956601798534393 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373343 synonymous SNV . 0 36 hm5C_associated_SNPs_14330 0 0 1 0 1 Cytosol 1 0.500231643920529 1 0.999536712158942 hm5C_site_16094 DeepMRMD:1;iRNA_m5C:0.999536712158942 16095 chr20 62566986 62566986 1 + G A rs373099874 62566984 + 62566964 62567004 41 GAAGGGGCCCTGTGCTGGCCCCGGGTCCGCCCCAGAGGAGT GAAGGGGCCCTGTGCTGGCCCCAGGTCCGCCCCAGAGGAGT < 41bp 1 0.335652276797897 1 0.746488869190216 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566984 chr20:62566986 . . 0 23 hm5C_associated_SNPs_14331 1 0 1 0 0 Ribosome 1 0.500231643921092 0.507022261619568 0.999536712157815 hm5C_site_16095 DeepMRMD:0.507022261619568;iRNA_m5C:0.999536712157815 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 16096 chr20 62566986 62566986 1 + G A rs373099874 62566985 + 62566965 62567005 41 AAGGGGCCCTGTGCTGGCCCCGGGTCCGCCCCAGAGGAGTC AAGGGGCCCTGTGCTGGCCCCAGGTCCGCCCCAGAGGAGTC < 41bp 1 0.543097967089584 1 0.746647417545319 experiment 0.913804065820831 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566985 chr20:62566986 . . 0 22 hm5C_associated_SNPs_14332 1 0 1 0 0 Ribosome 1 0.500231699710367 0.506705164909362 0.999536600579265 hm5C_site_16096 DeepMRMD:0.506705164909362;iRNA_m5C:0.999536600579265 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 16097 chr20 62566986 62566986 1 + G A rs373099874 62566990 + 62566970 62567010 41 GCCCTGTGCTGGCCCCGGGTCCGCCCCAGAGGAGTCCACAC GCCCTGTGCTGGCCCCAGGTCCGCCCCAGAGGAGTCCACAC < 41bp 1 0.217718242903178 1 0.179878652095795 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566990 chr20:62566986 . . 0 17 hm5C_associated_SNPs_14333 1 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_16097 DeepMRMD:1;iRNA_m5C:0.999536712157815 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 16098 chr20 62566986 62566986 1 + G A rs373099874 62566991 + 62566971 62567011 41 CCCTGTGCTGGCCCCGGGTCCGCCCCAGAGGAGTCCACACA CCCTGTGCTGGCCCCAGGTCCGCCCCAGAGGAGTCCACACA < 41bp 1 0.295033521347032 1 0.260623425245285 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566991 chr20:62566986 . . 0 16 hm5C_associated_SNPs_14334 1 0 1 0 0 Ribosome 1 0.500231643921492 1 0.999536712157016 hm5C_site_16098 DeepMRMD:1;iRNA_m5C:0.999536712157016 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 16099 chr20 62566986 62566986 1 + G A rs373099874 62566993 + 62566973 62567013 41 CTGTGCTGGCCCCGGGTCCGCCCCAGAGGAGTCCACACAGC CTGTGCTGGCCCCAGGTCCGCCCCAGAGGAGTCCACACAGC < 41bp 1 0.554708816196244 1 0.181692063808441 experiment 0.890582367607512 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566993 chr20:62566986 . . 0 14 hm5C_associated_SNPs_14335 1 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16099 DeepMRMD:1;iRNA_m5C:0.999536712157815 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 16100 chr20 62566986 62566986 1 + G A rs373099874 62566994 + 62566974 62567014 41 TGTGCTGGCCCCGGGTCCGCCCCAGAGGAGTCCACACAGCA TGTGCTGGCCCCAGGTCCGCCCCAGAGGAGTCCACACAGCA < 41bp 1 0.184405846143819 1 0.505933046340942 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566994 chr20:62566986 . . 0 13 hm5C_associated_SNPs_14336 1 0 1 0 0 Ribosome 1 0.500231643921133 0.988133907318116 0.999536712157734 hm5C_site_16100 DeepMRMD:0.988133907318116;iRNA_m5C:0.999536712157734 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 16101 chr20 62566986 62566986 1 + G A rs373099874 62566995 + 62566975 62567015 41 GTGCTGGCCCCGGGTCCGCCCCAGAGGAGTCCACACAGCAC GTGCTGGCCCCAGGTCCGCCCCAGAGGAGTCCACACAGCAC < 41bp 1 0.644239609391435 1 0.770483136177063 experiment 0.71152078121713 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566995 chr20:62566986 . . 0 12 hm5C_associated_SNPs_14337 1 0 1 0 0 Ribosome 1 0.500231643904036 0.459033727645874 0.999536712191929 hm5C_site_16101 DeepMRMD:0.459033727645874;iRNA_m5C:0.999536712191929 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 16102 chr20 62566986 62566986 1 + G A rs373099874 62566996 + 62566976 62567016 41 TGCTGGCCCCGGGTCCGCCCCAGAGGAGTCCACACAGCACC TGCTGGCCCCAGGTCCGCCCCAGAGGAGTCCACACAGCACC < 41bp 1 0.607184374120593 1 0.859338402748108 experiment 0.785631251758815 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566996 chr20:62566986 . . 0 11 hm5C_associated_SNPs_14338 1 0 1 0 0 Ribosome 1 0.500231643922138 0.281323194503784 0.999536712155723 hm5C_site_16102 DeepMRMD:0.281323194503784;iRNA_m5C:0.999536712155723 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 16103 chr20 62566991 62566991 1 + C A rs3810500 62566984 + 62566964 62567004 41 GAAGGGGCCCTGTGCTGGCCCCGGGTCCGCCCCAGAGGAGT GAAGGGGCCCTGTGCTGGCCCCGGGTCAGCCCCAGAGGAGT < 41bp 1 0.486503201828967 1 0.765985250473022 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566984 chr20:62566991 . . 0 28 hm5C_associated_SNPs_14339 0 0 1 0 0 Ribosome 1 0.500231643921133 0.468029499053956 0.999536712157733 hm5C_site_16103 DeepMRMD:0.468029499053956;iRNA_m5C:0.999536712157733 16104 chr20 62566991 62566991 1 + C A rs3810500 62566985 + 62566965 62567005 41 AAGGGGCCCTGTGCTGGCCCCGGGTCCGCCCCAGAGGAGTC AAGGGGCCCTGTGCTGGCCCCGGGTCAGCCCCAGAGGAGTC < 41bp 1 0.628121169830524 1 0.735438346862793 experiment 0.743757660338952 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566985 chr20:62566991 . . 0 27 hm5C_associated_SNPs_14340 0 0 1 0 0 Ribosome 1 0.500231643921092 0.529123306274414 0.999536712157815 hm5C_site_16104 DeepMRMD:0.529123306274414;iRNA_m5C:0.999536712157815 16105 chr20 62566991 62566991 1 + C A rs3810500 62566990 + 62566970 62567010 41 GCCCTGTGCTGGCCCCGGGTCCGCCCCAGAGGAGTCCACAC GCCCTGTGCTGGCCCCGGGTCAGCCCCAGAGGAGTCCACAC < 41bp 1 0.401386798440389 1 0.446940720081329 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566990 chr20:62566991 . . 0 22 hm5C_associated_SNPs_14341 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16105 DeepMRMD:1;iRNA_m5C:0.999536712157815 16106 chr20 62566991 62566991 1 + C A rs3810500 62566993 + 62566973 62567013 41 CTGTGCTGGCCCCGGGTCCGCCCCAGAGGAGTCCACACAGC CTGTGCTGGCCCCGGGTCAGCCCCAGAGGAGTCCACACAGC < 41bp 1 0.638176447109373 1 0.180318742990494 experiment 0.723647105781254 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566993 chr20:62566991 . . 0 19 hm5C_associated_SNPs_14342 0 0 1 0 0 Ribosome 1 0.500231647377273 1 0.999536705245454 hm5C_site_16106 DeepMRMD:1;iRNA_m5C:0.999536705245454 16107 chr20 62566991 62566991 1 + C A rs3810500 62566994 + 62566974 62567014 41 TGTGCTGGCCCCGGGTCCGCCCCAGAGGAGTCCACACAGCA TGTGCTGGCCCCGGGTCAGCCCCAGAGGAGTCCACACAGCA < 41bp 1 0.301877822495012 1 0.613348305225372 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566994 chr20:62566991 . . 0 18 hm5C_associated_SNPs_14343 0 0 1 0 0 Ribosome 1 0.500231643921304 0.773303389549256 0.999536712157392 hm5C_site_16107 DeepMRMD:0.773303389549256;iRNA_m5C:0.999536712157392 16108 chr20 62566991 62566991 1 + C A rs3810500 62566996 + 62566976 62567016 41 TGCTGGCCCCGGGTCCGCCCCAGAGGAGTCCACACAGCACC TGCTGGCCCCGGGTCAGCCCCAGAGGAGTCCACACAGCACC < 41bp 1 0.654656410162342 1 0.897725701332092 experiment 0.690687179675316 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62566996 chr20:62566991 . . 0 16 hm5C_associated_SNPs_14345 0 0 1 0 0 Ribosome 1 0.500231643921092 0.204548597335816 0.999536712157815 hm5C_site_16108 DeepMRMD:0.204548597335816;iRNA_m5C:0.999536712157815 16109 chr20 62567038 62567038 1 + C T rs11554630 62567031 + 62567011 62567051 41 AGCACCACCTCCAGAAGGGGCTGGGCCCGGGGTCCTGCAGG AGCACCACCTCCAGAAGGGGCTGGGCCTGGGGTCCTGCAGG < 41bp 1 0.682930812804947 1 0.562683045864105 experiment 0.634138374390106 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62567031 chr20:62567038 . . 0 28 hm5C_associated_SNPs_14346 1 0 1 0 0 Ribosome 1 0.500231643921092 0.87463390827179 0.999536712157815 hm5C_site_16109 DeepMRMD:0.87463390827179;iRNA_m5C:0.999536712157815 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 16110 chr20 62567038 62567038 1 + C T rs11554630 62567036 + 62567016 62567056 41 CACCTCCAGAAGGGGCTGGGCCCGGGGTCCTGCAGGCGGCA CACCTCCAGAAGGGGCTGGGCCTGGGGTCCTGCAGGCGGCA < 41bp 1 0.194732872119369 1 0.342066764831543 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62567036 chr20:62567038 . . 0 23 hm5C_associated_SNPs_14347 1 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16110 DeepMRMD:1;iRNA_m5C:0.999536712157815 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 16111 chr20 62567050 62567050 1 + G C rs191412647 62567036 + 62567016 62567056 41 CACCTCCAGAAGGGGCTGGGCCCGGGGTCCTGCAGGCGGCA CACCTCCAGAAGGGGCTGGGCCCGGGGTCCTGCACGCGGCA < 41bp 1 0.423713501475164 1 0.547479331493378 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62567036 chr20:62567050 . . 0 35 hm5C_associated_SNPs_14349 1 0 1 0 0 Ribosome 1 0.500231643982896 0.905041337013244 0.999536712034208 hm5C_site_16111 DeepMRMD:0.905041337013244;iRNA_m5C:0.999536712034208 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 16112 chr20 62567052 62567052 1 + C T rs146360147 62567036 + 62567016 62567056 41 CACCTCCAGAAGGGGCTGGGCCCGGGGTCCTGCAGGCGGCA CACCTCCAGAAGGGGCTGGGCCCGGGGTCCTGCAGGTGGCA < 41bp 1 0.333996772770199 1 0.407073557376862 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62567036 chr20:62567052 . . 0 37 hm5C_associated_SNPs_14351 1 0 1 0 0 Ribosome 1 0.500231643922405 1 0.99953671215519 hm5C_site_16112 DeepMRMD:1;iRNA_m5C:0.99953671215519 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 16113 chr20 62567052 62567052 1 + C T rs146360147 62567037 + 62567017 62567057 41 ACCTCCAGAAGGGGCTGGGCCCGGGGTCCTGCAGGCGGCAC ACCTCCAGAAGGGGCTGGGCCCGGGGTCCTGCAGGTGGCAC < 41bp 1 0.682502531158312 1 0.651510834693909 experiment 0.634994937683376 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNAJC5 ENSG00000101152 UTR3 Human protein_coding chr20:62567037 chr20:62567052 . . 0 36 hm5C_associated_SNPs_14352 1 0 1 0 0 Ribosome 1 0.500231643921113 0.696978330612182 0.999536712157775 hm5C_site_16113 DeepMRMD:0.696978330612182;iRNA_m5C:0.999536712157775 Neuronal Ceroid-Lipofuscinosis, Recessive Neuronal Ceroid-Lipofuscinosis, Recessive 16114 chr20 62588141 62588141 1 + G A rs190468747 62588144 - 62588124 62588164 41 CGGTCCTCGTCCCCGCCCCGCGCCCTGGTCCCGAGTGGCGT CGGTCCTCGTCCCCGCCCCGCGCTCTGGTCCCGAGTGGCGT < 41bp 1 0.147610500012096 1 0.0780741572380066 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UCKL1-AS1 ENSG00000196700 UTR3 Human protein_coding chr20:62588144 chr20:62588141 . . 0 24 hm5C_associated_SNPs_14353 0 0 1 0 0 unknown 1 0.500229628306801 1 0.999540743386399 hm5C_site_16114 DeepMRMD:1;iRNA_m5C:0.999540743386399 16115 chr20 62588141 62588141 1 + G A rs190468747 62588146 - 62588126 62588166 41 CCCGGTCCTCGTCCCCGCCCCGCGCCCTGGTCCCGAGTGGC CCCGGTCCTCGTCCCCGCCCCGCGCTCTGGTCCCGAGTGGC < 41bp 1 0.252923146131517 1 0.262525260448456 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UCKL1-AS1 ENSG00000196700 UTR3 Human protein_coding chr20:62588146 chr20:62588141 . . 0 26 hm5C_associated_SNPs_14354 0 0 1 0 0 unknown 1 0.500231643737804 1 0.999536712524392 hm5C_site_16115 DeepMRMD:1;iRNA_m5C:0.999536712524392 16116 chr20 62588141 62588141 1 + G A rs190468747 62588147 - 62588127 62588167 41 CCCCGGTCCTCGTCCCCGCCCCGCGCCCTGGTCCCGAGTGG CCCCGGTCCTCGTCCCCGCCCCGCGCTCTGGTCCCGAGTGG < 41bp 1 0.376895397163632 1 0.259625494480133 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UCKL1-AS1 ENSG00000196700 UTR3 Human protein_coding chr20:62588147 chr20:62588141 . . 0 27 hm5C_associated_SNPs_14355 0 0 1 0 0 unknown 1 0.50023165009746 1 0.99953669980508 hm5C_site_16116 DeepMRMD:1;iRNA_m5C:0.99953669980508 16117 chr20 62588141 62588141 1 + G A rs190468747 62588148 - 62588128 62588168 41 TCCCCGGTCCTCGTCCCCGCCCCGCGCCCTGGTCCCGAGTG TCCCCGGTCCTCGTCCCCGCCCCGCGCTCTGGTCCCGAGTG < 41bp 1 0.172424585850522 1 0.216338485479355 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UCKL1-AS1 ENSG00000196700 UTR3 Human protein_coding chr20:62588148 chr20:62588141 . . 0 28 hm5C_associated_SNPs_14356 0 0 1 0 0 unknown 1 0.500226907045118 1 0.999546185909765 hm5C_site_16117 DeepMRMD:1;iRNA_m5C:0.999546185909765 16118 chr20 62588141 62588141 1 + G A rs190468747 62588149 - 62588129 62588169 41 GTCCCCGGTCCTCGTCCCCGCCCCGCGCCCTGGTCCCGAGT GTCCCCGGTCCTCGTCCCCGCCCCGCGCTCTGGTCCCGAGT < 41bp 1 0.224463252695911 1 0.0825243890285492 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UCKL1-AS1 ENSG00000196700 UTR3 Human protein_coding chr20:62588149 chr20:62588141 . . 0 29 hm5C_associated_SNPs_14357 0 0 1 0 0 unknown 1 0.50023164392172 1 0.99953671215656 hm5C_site_16118 DeepMRMD:1;iRNA_m5C:0.99953671215656 16119 chr20 62588151 62588151 1 + G A rs139959757 62588144 - 62588124 62588164 41 CGGTCCTCGTCCCCGCCCCGCGCCCTGGTCCCGAGTGGCGT CGGTCCTCGTCCCTGCCCCGCGCCCTGGTCCCGAGTGGCGT < 41bp 1 0.238862259094105 1 0.167861253023148 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UCKL1-AS1 ENSG00000196700 UTR3 Human protein_coding chr20:62588144 chr20:62588151 . . 0 14 hm5C_associated_SNPs_14358 0 0 1 0 0 unknown 1 0.500231643921002 1 0.999536712157997 hm5C_site_16119 DeepMRMD:1;iRNA_m5C:0.999536712157997 16120 chr20 62588151 62588151 1 + G A rs139959757 62588146 - 62588126 62588166 41 CCCGGTCCTCGTCCCCGCCCCGCGCCCTGGTCCCGAGTGGC CCCGGTCCTCGTCCCTGCCCCGCGCCCTGGTCCCGAGTGGC < 41bp 1 0.244601786299584 1 0.23557111620903 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UCKL1-AS1 ENSG00000196700 UTR3 Human protein_coding chr20:62588146 chr20:62588151 . . 0 16 hm5C_associated_SNPs_14359 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16120 DeepMRMD:1;iRNA_m5C:0.999536712157815 16121 chr20 62588151 62588151 1 + G A rs139959757 62588147 - 62588127 62588167 41 CCCCGGTCCTCGTCCCCGCCCCGCGCCCTGGTCCCGAGTGG CCCCGGTCCTCGTCCCTGCCCCGCGCCCTGGTCCCGAGTGG < 41bp 1 0.356462402407628 1 0.36631566286087 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UCKL1-AS1 ENSG00000196700 UTR3 Human protein_coding chr20:62588147 chr20:62588151 . . 0 17 hm5C_associated_SNPs_14360 0 0 1 0 0 unknown 1 0.500231649584504 1 0.999536700830993 hm5C_site_16121 DeepMRMD:1;iRNA_m5C:0.999536700830993 16122 chr20 62588151 62588151 1 + G A rs139959757 62588148 - 62588128 62588168 41 TCCCCGGTCCTCGTCCCCGCCCCGCGCCCTGGTCCCGAGTG TCCCCGGTCCTCGTCCCTGCCCCGCGCCCTGGTCCCGAGTG < 41bp 1 0.234122022710872 1 0.197006493806839 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UCKL1-AS1 ENSG00000196700 UTR3 Human protein_coding chr20:62588148 chr20:62588151 . . 0 18 hm5C_associated_SNPs_14361 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16122 DeepMRMD:1;iRNA_m5C:0.999536712157815 16123 chr20 62588151 62588151 1 + G A rs139959757 62588149 - 62588129 62588169 41 GTCCCCGGTCCTCGTCCCCGCCCCGCGCCCTGGTCCCGAGT GTCCCCGGTCCTCGTCCCTGCCCCGCGCCCTGGTCCCGAGT < 41bp 1 0.222769848893982 1 0.119118452072144 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UCKL1-AS1 ENSG00000196700 UTR3 Human protein_coding chr20:62588149 chr20:62588151 . . 0 19 hm5C_associated_SNPs_14362 0 0 1 0 0 unknown 1 0.500231643796658 1 0.999536712406685 hm5C_site_16123 DeepMRMD:1;iRNA_m5C:0.999536712406685 16124 chr20 62664387 62664387 1 + G A rs190671481 62664406 + 62664386 62664426 41 GGGCCGCATGTGGAAGGGCTCTGAGCTGTGTCCTCCTTCAT GAGCCGCATGTGGAAGGGCTCTGAGCTGTGTCCTCCTTCAT < 41bp 1 0.633843595747264 1 0.188876152038574 experiment 0.732312808505472 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRPF6 ENSG00000101161 UTR3 Human protein_coding chr20:62664406 chr20:62664387 . . 0 2 hm5C_associated_SNPs_14363 0 0 1 0 0 Cytosol 1 0.500231626530077 1 0.999536746939847 hm5C_site_16124 DeepMRMD:1;iRNA_m5C:0.999536746939847 16125 chr20 62906514 62906514 1 + G A rs10485816 62906515 + 62906495 62906535 41 ATGTATTGCTCTAGATTGGGCAGTTTAAGTCATTTTAAAGA ATGTATTGCTCTAGATTGGACAGTTTAAGTCATTTTAAAGA < 41bp 1 0.245521252738071 1 0.151423513889313 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCMTD2 ENSG00000203880 UTR3 Human protein_coding chr20:62906515 chr20:62906514 . . 0 20 hm5C_associated_SNPs_14365 0 0 1 0 0 Ribosome 1 0.500231643902902 1 0.999536712194196 hm5C_site_16125 DeepMRMD:1;iRNA_m5C:0.999536712194196 16126 chr21 9825838 9825838 1 + T C rs563875271 9825837 + 9825817 9825857 41 TTCCGGGGGACCGGCCGCGACTGCGGCGGCGGTGGTGGGGG TTCCGGGGGACCGGCCGCGACCGCGGCGGCGGTGGTGGGGG < 41bp 1 0.569152223109982 1 0.592621684074402 experiment 0.861695553780035 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825837 chr21:9825838 . . 0 22 hm5C_associated_SNPs_14371 0 0 1 0 0 unknown 1 0.500231660026338 0.814756631851196 0.999536679947324 hm5C_site_16126 DeepMRMD:0.814756631851196;iRNA_m5C:0.999536679947324 16127 chr21 9825916 9825916 1 + G A rs564942295 9825901 + 9825881 9825921 41 CGGTCGGCCGCCCCGGGTGCCGCGCGGTGCCGCCGGCGGCG CGGTCGGCCGCCCCGGGTGCCGCGCGGTGCCGCCGACGGCG < 41bp 1 0.580569216603609 1 0.58292543888092 experiment 0.838861566792782 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825901 chr21:9825916 . . 0 36 hm5C_associated_SNPs_14374 0 0 1 0 0 unknown 1 0.500231642858209 0.83414912223816 0.999536714283582 hm5C_site_16127 DeepMRMD:0.83414912223816;iRNA_m5C:0.999536714283582 16128 chr21 9825916 9825916 1 + G A rs564942295 9825905 + 9825885 9825925 41 CGGCCGCCCCGGGTGCCGCGCGGTGCCGCCGGCGGCGGTGA CGGCCGCCCCGGGTGCCGCGCGGTGCCGCCGACGGCGGTGA < 41bp 1 0.528015272150155 1 0.515968084335327 experiment 0.943969455699691 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825905 chr21:9825916 . . 0 32 hm5C_associated_SNPs_14375 0 0 1 0 0 unknown 1 0.500231601044819 0.968063831329346 0.999536797910361 hm5C_site_16128 DeepMRMD:0.968063831329346;iRNA_m5C:0.999536797910361 16129 chr21 9825916 9825916 1 + G A rs564942295 9825910 + 9825890 9825930 41 GCCCCGGGTGCCGCGCGGTGCCGCCGGCGGCGGTGAGGCCC GCCCCGGGTGCCGCGCGGTGCCGCCGACGGCGGTGAGGCCC < 41bp 1 0.455936736025474 1 0.261114031076431 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825910 chr21:9825916 . . 0 27 hm5C_associated_SNPs_14376 0 0 1 0 0 unknown 1 0.500231626423917 1 0.999536747152166 hm5C_site_16129 DeepMRMD:1;iRNA_m5C:0.999536747152166 16130 chr21 9825916 9825916 1 + G A rs564942295 9825913 + 9825893 9825933 41 CCGGGTGCCGCGCGGTGCCGCCGGCGGCGGTGAGGCCCCGC CCGGGTGCCGCGCGGTGCCGCCGACGGCGGTGAGGCCCCGC < 41bp 1 0.353283285256263 1 0.665869414806366 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825913 chr21:9825916 . . 0 24 hm5C_associated_SNPs_14377 0 0 1 0 0 unknown 1 0.500234776066306 0.668261170387268 0.999530447867388 hm5C_site_16130 DeepMRMD:0.668261170387268;iRNA_m5C:0.999530447867388 16131 chr21 9825916 9825916 1 + G A rs564942295 9825914 + 9825894 9825934 41 CGGGTGCCGCGCGGTGCCGCCGGCGGCGGTGAGGCCCCGCG CGGGTGCCGCGCGGTGCCGCCGACGGCGGTGAGGCCCCGCG < 41bp 1 0.618410139817653 1 0.595958292484283 experiment 0.763179720364695 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825914 chr21:9825916 . . 0 23 hm5C_associated_SNPs_14378 0 0 1 0 0 unknown 1 0.500231649706552 0.808083415031434 0.999536700586896 hm5C_site_16131 DeepMRMD:0.808083415031434;iRNA_m5C:0.999536700586896 16132 chr21 9825916 9825916 1 + G A rs564942295 9825928 + 9825908 9825948 41 TGCCGCCGGCGGCGGTGAGGCCCCGCGCGTGTGTCCCGGCT TGCCGCCGACGGCGGTGAGGCCCCGCGCGTGTGTCCCGGCT < 41bp 1 0.437280673328597 1 0.458981275558472 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825928 chr21:9825916 . . 0 9 hm5C_associated_SNPs_14379 0 0 1 0 0 unknown 1 0.500231643922421 1 0.999536712155157 hm5C_site_16132 DeepMRMD:1;iRNA_m5C:0.999536712155157 16133 chr21 9825916 9825916 1 + G A rs564942295 9825930 + 9825910 9825950 41 CCGCCGGCGGCGGTGAGGCCCCGCGCGTGTGTCCCGGCTGC CCGCCGACGGCGGTGAGGCCCCGCGCGTGTGTCCCGGCTGC < 41bp 1 0.678657510014302 1 0.537939071655273 experiment 0.642684979971397 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825930 chr21:9825916 . . 0 7 hm5C_associated_SNPs_14380 0 0 1 0 0 unknown 1 0.500231643712482 0.924121856689454 0.999536712575037 hm5C_site_16133 DeepMRMD:0.924121856689454;iRNA_m5C:0.999536712575037 16134 chr21 9825916 9825916 1 + G A rs564942295 9825935 + 9825915 9825955 41 GGCGGCGGTGAGGCCCCGCGCGTGTGTCCCGGCTGCGGTCG GACGGCGGTGAGGCCCCGCGCGTGTGTCCCGGCTGCGGTCG < 41bp 1 0.617873432233317 1 0.274904668331146 experiment 0.764253135533366 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825935 chr21:9825916 . . 0 2 hm5C_associated_SNPs_14381 0 0 1 0 0 unknown 1 0.50023164394628 1 0.999536712107441 hm5C_site_16134 DeepMRMD:1;iRNA_m5C:0.999536712107441 16135 chr21 9825935 9825935 1 + C T rs547209479 9825928 + 9825908 9825948 41 TGCCGCCGGCGGCGGTGAGGCCCCGCGCGTGTGTCCCGGCT TGCCGCCGGCGGCGGTGAGGCCCCGCGTGTGTGTCCCGGCT < 41bp 1 0.461713937606064 1 0.374808222055435 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825928 chr21:9825935 . . 0 28 hm5C_associated_SNPs_14382 0 0 1 0 0 unknown 1 0.50023164363465 1 0.999536712730699 hm5C_site_16135 DeepMRMD:1;iRNA_m5C:0.999536712730699 16136 chr21 9825935 9825935 1 + C T rs547209479 9825930 + 9825910 9825950 41 CCGCCGGCGGCGGTGAGGCCCCGCGCGTGTGTCCCGGCTGC CCGCCGGCGGCGGTGAGGCCCCGCGTGTGTGTCCCGGCTGC < 41bp 1 0.69419159941802 1 0.404431849718094 experiment 0.61161680116396 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825930 chr21:9825935 . . 0 26 hm5C_associated_SNPs_14383 0 0 1 0 0 unknown 1 0.500231616063536 1 0.999536767872928 hm5C_site_16136 DeepMRMD:1;iRNA_m5C:0.999536767872928 16137 chr21 9825935 9825935 1 + C T rs547209479 9825943 + 9825923 9825963 41 TGAGGCCCCGCGCGTGTGTCCCGGCTGCGGTCGGCCGCGCT TGAGGCCCCGCGTGTGTGTCCCGGCTGCGGTCGGCCGCGCT < 41bp 1 0.441733502197019 1 0.675536453723907 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825943 chr21:9825935 . . 0 13 hm5C_associated_SNPs_14385 0 0 1 0 0 unknown 1 0.500231639975702 0.648927092552186 0.999536720048597 hm5C_site_16137 DeepMRMD:0.648927092552186;iRNA_m5C:0.999536720048597 16138 chr21 9825935 9825935 1 + C T rs547209479 9825944 + 9825924 9825964 41 GAGGCCCCGCGCGTGTGTCCCGGCTGCGGTCGGCCGCGCTC GAGGCCCCGCGTGTGTGTCCCGGCTGCGGTCGGCCGCGCTC < 41bp 1 0.676377468082573 1 0.771051406860352 experiment 0.647245063834854 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825944 chr21:9825935 . . 0 12 hm5C_associated_SNPs_14386 0 0 1 0 0 unknown 1 0.500231643866523 0.457897186279296 0.999536712266954 hm5C_site_16138 DeepMRMD:0.457897186279296;iRNA_m5C:0.999536712266954 16139 chr21 9825935 9825935 1 + C T rs547209479 9825954 + 9825934 9825974 41 GCGTGTGTCCCGGCTGCGGTCGGCCGCGCTCGAGGGGTCCC GTGTGTGTCCCGGCTGCGGTCGGCCGCGCTCGAGGGGTCCC < 41bp 1 0.584122822301327 1 0.694734632968903 experiment 0.831754355397345 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825954 chr21:9825935 . . 0 2 hm5C_associated_SNPs_14387 0 0 1 0 0 unknown 1 0.499693090305196 0.610530734062194 1 hm5C_site_16139 DeepMRMD:0.610530734062194;iRNA_m5C:1 16140 chr21 9825939 9825939 1 + T C rs560916630 9825928 + 9825908 9825948 41 TGCCGCCGGCGGCGGTGAGGCCCCGCGCGTGTGTCCCGGCT TGCCGCCGGCGGCGGTGAGGCCCCGCGCGTGCGTCCCGGCT < 41bp 1 0.453320934594839 1 0.552919745445251 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825928 chr21:9825939 . . 0 32 hm5C_associated_SNPs_14388 0 0 1 0 0 unknown 1 0.50023161475417 0.894160509109498 0.99953677049166 hm5C_site_16140 DeepMRMD:0.894160509109498;iRNA_m5C:0.99953677049166 16141 chr21 9825939 9825939 1 + T C rs560916630 9825930 + 9825910 9825950 41 CCGCCGGCGGCGGTGAGGCCCCGCGCGTGTGTCCCGGCTGC CCGCCGGCGGCGGTGAGGCCCCGCGCGTGCGTCCCGGCTGC < 41bp 1 0.699093026838603 1 0.709578275680542 experiment 0.601813946322793 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825930 chr21:9825939 . . 0 30 hm5C_associated_SNPs_14389 0 0 1 0 0 unknown 1 0.500231557272108 0.580843448638916 0.999536885455785 hm5C_site_16141 DeepMRMD:0.580843448638916;iRNA_m5C:0.999536885455785 16142 chr21 9825939 9825939 1 + T C rs560916630 9825935 + 9825915 9825955 41 GGCGGCGGTGAGGCCCCGCGCGTGTGTCCCGGCTGCGGTCG GGCGGCGGTGAGGCCCCGCGCGTGCGTCCCGGCTGCGGTCG < 41bp 1 0.571669416349883 1 0.603969037532806 experiment 0.856661167300233 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825935 chr21:9825939 . . 0 25 hm5C_associated_SNPs_14390 0 0 1 0 0 unknown 1 0.500231633858327 0.792061924934388 0.999536732283346 hm5C_site_16142 DeepMRMD:0.792061924934388;iRNA_m5C:0.999536732283346 16143 chr21 9825939 9825939 1 + T C rs560916630 9825942 + 9825922 9825962 41 GTGAGGCCCCGCGCGTGTGTCCCGGCTGCGGTCGGCCGCGC GTGAGGCCCCGCGCGTGCGTCCCGGCTGCGGTCGGCCGCGC < 41bp 1 0.689092013957229 1 0.654417455196381 experiment 0.621815972085542 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825942 chr21:9825939 . . 0 18 hm5C_associated_SNPs_14391 0 0 1 0 0 unknown 1 0.500231643921087 0.691165089607238 0.999536712157825 hm5C_site_16143 DeepMRMD:0.691165089607238;iRNA_m5C:0.999536712157825 16144 chr21 9825939 9825939 1 + T C rs560916630 9825943 + 9825923 9825963 41 TGAGGCCCCGCGCGTGTGTCCCGGCTGCGGTCGGCCGCGCT TGAGGCCCCGCGCGTGCGTCCCGGCTGCGGTCGGCCGCGCT < 41bp 1 0.416517630398885 1 0.736661553382874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825943 chr21:9825939 . . 0 17 hm5C_associated_SNPs_14392 0 0 1 0 0 unknown 1 0.500231724601045 0.526676893234252 0.999536550797909 hm5C_site_16144 DeepMRMD:0.526676893234252;iRNA_m5C:0.999536550797909 16145 chr21 9825939 9825939 1 + T C rs560916630 9825944 + 9825924 9825964 41 GAGGCCCCGCGCGTGTGTCCCGGCTGCGGTCGGCCGCGCTC GAGGCCCCGCGCGTGCGTCCCGGCTGCGGTCGGCCGCGCTC < 41bp 1 0.678371065881459 1 0.690582513809204 experiment 0.643257868237083 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825944 chr21:9825939 . . 0 16 hm5C_associated_SNPs_14393 0 0 1 0 0 unknown 1 0.500231643921076 0.618834972381592 0.999536712157848 hm5C_site_16145 DeepMRMD:0.618834972381592;iRNA_m5C:0.999536712157848 16146 chr21 9825939 9825939 1 + T C rs560916630 9825954 + 9825934 9825974 41 GCGTGTGTCCCGGCTGCGGTCGGCCGCGCTCGAGGGGTCCC GCGTGCGTCCCGGCTGCGGTCGGCCGCGCTCGAGGGGTCCC < 41bp 1 0.58533309933469 1 0.527468025684357 experiment 0.829333801330621 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825954 chr21:9825939 . . 0 6 hm5C_associated_SNPs_14394 0 0 1 0 0 unknown 1 0.500015769963811 0.945063948631286 0.999968460072378 hm5C_site_16146 DeepMRMD:0.945063948631286;iRNA_m5C:0.999968460072378 16147 chr21 9825939 9825939 1 + T C rs560916630 9825957 + 9825937 9825977 41 TGTGTCCCGGCTGCGGTCGGCCGCGCTCGAGGGGTCCCCGT TGCGTCCCGGCTGCGGTCGGCCGCGCTCGAGGGGTCCCCGT < 41bp 1 0.452967635024373 1 0.426984846591949 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825957 chr21:9825939 . . 0 3 hm5C_associated_SNPs_14395 0 0 1 0 0 unknown 1 0.500231641539366 1 0.999536716921268 hm5C_site_16147 DeepMRMD:1;iRNA_m5C:0.999536716921268 16148 chr21 9825939 9825939 1 + T C rs560916630 9825958 + 9825938 9825978 41 GTGTCCCGGCTGCGGTCGGCCGCGCTCGAGGGGTCCCCGTG GCGTCCCGGCTGCGGTCGGCCGCGCTCGAGGGGTCCCCGTG < 41bp 1 0.608219456631276 1 0.422574460506439 experiment 0.783561086737447 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825958 chr21:9825939 . . 0 2 hm5C_associated_SNPs_14396 0 0 1 0 0 unknown 1 0.500233373785757 1 0.999533252428485 hm5C_site_16148 DeepMRMD:1;iRNA_m5C:0.999533252428485 16149 chr21 9825985 9825985 1 + C G rs550039611 9825972 + 9825952 9825992 41 GTCGGCCGCGCTCGAGGGGTCCCCGTGGCGTCCCCTTCCCC GTCGGCCGCGCTCGAGGGGTCCCCGTGGCGTCCGCTTCCCC < 41bp 1 0.362112764777528 1 0.192402780056 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825972 chr21:9825985 . . 0 34 hm5C_associated_SNPs_14397 0 0 1 0 0 unknown 1 0.500231643865561 1 0.999536712268878 hm5C_site_16149 DeepMRMD:1;iRNA_m5C:0.999536712268878 16150 chr21 9825985 9825985 1 + C G rs550039611 9825983 + 9825963 9826003 41 TCGAGGGGTCCCCGTGGCGTCCCCTTCCCCGCCGGCCGCCT TCGAGGGGTCCCCGTGGCGTCCGCTTCCCCGCCGGCCGCCT < 41bp 1 0.331999211715028 1 0.0629633963108063 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825983 chr21:9825985 . . 0 23 hm5C_associated_SNPs_14398 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16150 DeepMRMD:1;iRNA_m5C:0.999536712157815 16151 chr21 9825985 9825985 1 + C G rs550039611 9825986 + 9825966 9826006 41 AGGGGTCCCCGTGGCGTCCCCTTCCCCGCCGGCCGCCTTTC AGGGGTCCCCGTGGCGTCCGCTTCCCCGCCGGCCGCCTTTC < 41bp 1 0.232098000375406 1 0.154115557670593 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825986 chr21:9825985 . . 0 20 hm5C_associated_SNPs_14399 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16151 DeepMRMD:1;iRNA_m5C:0.999536712157815 16152 chr21 9825985 9825985 1 + C G rs550039611 9825990 + 9825970 9826010 41 GTCCCCGTGGCGTCCCCTTCCCCGCCGGCCGCCTTTCTCGC GTCCCCGTGGCGTCCGCTTCCCCGCCGGCCGCCTTTCTCGC < 41bp 1 0.475215228771136 1 0.300613105297089 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825990 chr21:9825985 . . 0 16 hm5C_associated_SNPs_14400 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_16152 DeepMRMD:1;iRNA_m5C:0.999536712157812 16153 chr21 9825985 9825985 1 + C G rs550039611 9825991 + 9825971 9826011 41 TCCCCGTGGCGTCCCCTTCCCCGCCGGCCGCCTTTCTCGCG TCCCCGTGGCGTCCGCTTCCCCGCCGGCCGCCTTTCTCGCG < 41bp 1 0.409418304007938 1 0.225399702787399 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825991 chr21:9825985 . . 0 15 hm5C_associated_SNPs_14401 0 0 1 0 0 unknown 1 0.500231643906484 1 0.999536712187031 hm5C_site_16153 DeepMRMD:1;iRNA_m5C:0.999536712187031 16154 chr21 9825985 9825985 1 + C G rs550039611 9825999 + 9825979 9826019 41 GCGTCCCCTTCCCCGCCGGCCGCCTTTCTCGCGCCTTCCCC GCGTCCGCTTCCCCGCCGGCCGCCTTTCTCGCGCCTTCCCC < 41bp 1 0.399581541537461 1 0.0666941404342651 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825999 chr21:9825985 . . 0 7 hm5C_associated_SNPs_14402 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16154 DeepMRMD:1;iRNA_m5C:0.999536712157815 16155 chr21 9825999 9825999 1 + C A rs538400500 9825983 + 9825963 9826003 41 TCGAGGGGTCCCCGTGGCGTCCCCTTCCCCGCCGGCCGCCT TCGAGGGGTCCCCGTGGCGTCCCCTTCCCCGCCGGCAGCCT < 41bp 1 0.221522126972609 1 0.0277998149394989 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825983 chr21:9825999 . . 0 37 hm5C_associated_SNPs_14403 0 0 1 0 0 unknown 1 0.500231643921151 1 0.999536712157697 hm5C_site_16155 DeepMRMD:1;iRNA_m5C:0.999536712157697 16156 chr21 9825999 9825999 1 + C A rs538400500 9825985 + 9825965 9826005 41 GAGGGGTCCCCGTGGCGTCCCCTTCCCCGCCGGCCGCCTTT GAGGGGTCCCCGTGGCGTCCCCTTCCCCGCCGGCAGCCTTT < 41bp 1 0.0449904219020876 1 0.0370005071163177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825985 chr21:9825999 . . 0 35 hm5C_associated_SNPs_14404 0 0 1 0 0 unknown 1 0.500231640531934 1 0.999536718936131 hm5C_site_16156 DeepMRMD:1;iRNA_m5C:0.999536718936131 16157 chr21 9825999 9825999 1 + C A rs538400500 9825986 + 9825966 9826006 41 AGGGGTCCCCGTGGCGTCCCCTTCCCCGCCGGCCGCCTTTC AGGGGTCCCCGTGGCGTCCCCTTCCCCGCCGGCAGCCTTTC < 41bp 1 0.216786450774102 1 0.10042867064476 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825986 chr21:9825999 . . 0 34 hm5C_associated_SNPs_14405 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16157 DeepMRMD:1;iRNA_m5C:0.999536712157815 16158 chr21 9825999 9825999 1 + C A rs538400500 9825990 + 9825970 9826010 41 GTCCCCGTGGCGTCCCCTTCCCCGCCGGCCGCCTTTCTCGC GTCCCCGTGGCGTCCCCTTCCCCGCCGGCAGCCTTTCTCGC < 41bp 1 0.438424676604081 1 0.29218065738678 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825990 chr21:9825999 . . 0 30 hm5C_associated_SNPs_14406 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16158 DeepMRMD:1;iRNA_m5C:0.999536712157815 16159 chr21 9825999 9825999 1 + C A rs538400500 9825991 + 9825971 9826011 41 TCCCCGTGGCGTCCCCTTCCCCGCCGGCCGCCTTTCTCGCG TCCCCGTGGCGTCCCCTTCCCCGCCGGCAGCCTTTCTCGCG < 41bp 1 0.404083941131848 1 0.179612576961517 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825991 chr21:9825999 . . 0 29 hm5C_associated_SNPs_14407 0 0 1 0 0 unknown 1 0.500231643921316 1 0.999536712157368 hm5C_site_16159 DeepMRMD:1;iRNA_m5C:0.999536712157368 16160 chr21 9825999 9825999 1 + C A rs538400500 9826006 + 9825986 9826026 41 CTTCCCCGCCGGCCGCCTTTCTCGCGCCTTCCCCGTCGCCC CTTCCCCGCCGGCAGCCTTTCTCGCGCCTTCCCCGTCGCCC < 41bp 1 0.570017397408273 1 0.28901731967926 experiment 0.859965205183455 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9826006 chr21:9825999 . . 0 14 hm5C_associated_SNPs_14408 0 0 1 0 0 unknown 1 0.50023164392106 1 0.999536712157879 hm5C_site_16160 DeepMRMD:1;iRNA_m5C:0.999536712157879 16161 chr21 9826230 9826230 1 + G A rs541117083 9826226 + 9826206 9826246 41 GCGTGCGCCCGAGCGCGGCCCGGTGGTCCCTCCCGGACAGG GCGTGCGCCCGAGCGCGGCCCGGTAGTCCCTCCCGGACAGG < 41bp 1 0.661230733332956 1 0.26841813325882 experiment 0.677538533334089 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3687-1;MIR3687-2 ENSG00000264063 ncRNA_exonic Human miRNA chr21:9826226 chr21:9826230 . . 0 25 hm5C_associated_SNPs_14410 0 0 1 0 0 unknown 1 0.500231643920842 1 0.999536712158316 hm5C_site_16161 DeepMRMD:1;iRNA_m5C:0.999536712158316 16162 chr21 9826230 9826230 1 + G A rs541117083 9826233 + 9826213 9826253 41 CCCGAGCGCGGCCCGGTGGTCCCTCCCGGACAGGCGTTCGT CCCGAGCGCGGCCCGGTAGTCCCTCCCGGACAGGCGTTCGT < 41bp 1 0.154770205694832 1 0.151145219802856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR3687-1;MIR3687-2 ENSG00000264063 ncRNA_exonic Human miRNA chr21:9826233 chr21:9826230 . . 0 18 hm5C_associated_SNPs_14411 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16162 DeepMRMD:1;iRNA_m5C:0.999536712157815 16163 chr21 17250133 17250133 1 + G A rs34979861 17250131 + 17250111 17250151 41 TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG TAAGAAATTAAATGAGCAAGCCACAGAACTCTTCGAATCTG < 41bp 1 0.404340114570476 1 0.163105189800262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP25 ENSG00000155313 CDS Human protein_coding chr21:17250131 chr21:17250133 nonsynonymous SNV 0.894 3 23 hm5C_associated_SNPs_14412 0 0 1 0 1 Cytosol 1 0.500229916044145 1 0.99954016791171 hm5C_site_16163 DeepMRMD:1;iRNA_m5C:0.99954016791171 16164 chr21 30714995 30714995 1 + C G rs61735775 30714981 + 30714961 30715001 41 CTGACCGGCCTCCAGCAGTGCTGCCTCCCTGTGCCAGAGGA CTGACCGGCCTCCAGCAGTGCTGCCTCCCTGTGCGAGAGGA < 41bp 1 0.268700208981657 1 0.0914976596832275 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BACH1 ENSG00000156273 CDS Human protein_coding chr21:30714981 chr21:30714995 synonymous SNV . 0 35 hm5C_associated_SNPs_14413 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_16164 DeepMRMD:1;iRNA_m5C:0.999536712157814 16165 chr21 33040849 33040849 1 + T A rs143100660 33040833 + 33040813 33040853 41 AGGTGGAAATGAAGAAAGTACAAAGACAGGAAACGCTGGAA AGGTGGAAATGAAGAAAGTACAAAGACAGGAAACGCAGGAA < 41bp 1 0.662580142777395 1 0.362880706787109 experiment 0.674839714445211 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SOD1 ENSG00000142168 CDS Human protein_coding chr21:33040833 chr21:33040849 synonymous SNV . 0 37 hm5C_associated_SNPs_14414 1 0 1 0 1 Ribosome 1 0.500231643923756 1 0.999536712152488 hm5C_site_16165 DeepMRMD:1;iRNA_m5C:0.999536712152488 Amyotrophic Lateral Sclerosis, Dominant Amyotrophic Lateral Sclerosis, Dominant 16166 chr21 33887131 33887131 1 + G A rs1129157 33887128 + 33887108 33887148 41 TCTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCT TCTCTTCCTCCTGCAGCCCACCCAGAGAGAGCTGCCCTGCT < 41bp 1 0.228816135418998 1 0.674376010894775 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887128 chr21:33887131 synonymous SNV . 0 24 hm5C_associated_SNPs_14415 0 0 0 1 1 Ribosome 1 0.50023164392109 0.65124797821045 0.999536712157819 hm5C_site_16166 DeepMRMD:0.65124797821045;iRNA_m5C:0.999536712157819 16167 chr21 33887131 33887131 1 + G A rs1129157 33887129 + 33887109 33887149 41 CTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTG CTCTTCCTCCTGCAGCCCACCCAGAGAGAGCTGCCCTGCTG < 41bp 1 0.677000825694398 1 0.359885841608047 experiment 0.645998348611203 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887129 chr21:33887131 synonymous SNV . 0 23 hm5C_associated_SNPs_14416 0 0 0 1 1 Ribosome 1 0.500231566450444 1 0.999536867099112 hm5C_site_16167 DeepMRMD:1;iRNA_m5C:0.999536867099112 16168 chr21 33887131 33887131 1 + G A rs1129157 33887130 + 33887110 33887150 41 TCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTGT TCTTCCTCCTGCAGCCCACCCAGAGAGAGCTGCCCTGCTGT < 41bp 1 0.672151489862324 1 0.825838923454285 experiment 0.655697020275353 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887130 chr21:33887131 synonymous SNV . 0 22 hm5C_associated_SNPs_14417 0 0 0 1 1 Ribosome 1 0.500231643921092 0.34832215309143 0.999536712157815 hm5C_site_16168 DeepMRMD:0.34832215309143;iRNA_m5C:0.999536712157815 16169 chr21 34787294 34787294 1 + C G rs4986958 34787311 + 34787291 34787331 41 GCACGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA GCAGGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA < 41bp 1 0.567372969733284 1 0.701852202415466 experiment 0.865254060533431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787311 chr21:34787294 nonsynonymous SNV 0.001 1 4 hm5C_associated_SNPs_14418 1 0 1 0 2 Endoplasmic reticulum 1 0.500231643921687 0.596295595169068 0.999536712156625 hm5C_site_16169 DeepMRMD:0.596295595169068;iRNA_m5C:0.999536712156625 Interferon gamma receptor deficiency Interferon gamma receptor deficiency 16170 chr21 34787312 34787312 1 + A G rs9808753 34787311 + 34787291 34787331 41 GCACGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA GCACGAGGCCTGTTGTCTACCGAGTGCAGTTTAAATAGTAA < 41bp 1 0.611063950871168 1 0.774399995803833 experiment 0.777872098257665 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787311 chr21:34787312 nonsynonymous SNV 0.171 0 22 hm5C_associated_SNPs_14419 0 1 0 0 1 Endoplasmic reticulum 1 0.500231643921111 0.451200008392334 0.999536712157778 hm5C_site_16170 DeepMRMD:0.451200008392334;iRNA_m5C:0.999536712157778 16171 chr21 34809293 34809293 1 + T C rs145162057 34809311 + 34809291 34809331 41 ACTGGCTCCCTGGAAGAGATCAAGCCATCGGAGCTGCTAGA ACCGGCTCCCTGGAAGAGATCAAGCCATCGGAGCTGCTAGA < 41bp 1 0.473066099997743 1 0.285241067409515 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFNGR2 ENSG00000159128 UTR3 Human protein_coding chr21:34809311 chr21:34809293 . . 0 3 hm5C_associated_SNPs_14420 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16171 DeepMRMD:1;iRNA_m5C:0.999536712157815 16172 chr21 35477883 35477883 1 + C A rs75868158 35477892 + 35477872 35477912 41 TTGTAAGAGACCAGTTAGTACACTGGGGGTGTATATTGTGT TTGTAAGAGACAAGTTAGTACACTGGGGGTGTATATTGTGT < 41bp 1 0.283921758478444 1 0.353203475475311 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC5A3 ENSG00000272657 ncRNA_intronic Human processed_transcript chr21:35477892 chr21:35477883 . . 0 12 hm5C_associated_SNPs_14421 0 0 1 0 0 Nucleus 1 0.500231643975389 1 0.999536712049222 hm5C_site_16172 DeepMRMD:1;iRNA_m5C:0.999536712049222 16173 chr21 37612093 37612093 1 + C T rs61756713 37612088 + 37612068 37612108 41 TGTTTGTCGTGCTGGACAGCCTGGCCTGCACGGATGGTGCC TGTTTGTCGTGCTGGACAGCCTGGCTTGCACGGATGGTGCC < 41bp 1 0.567916722288224 1 0.466522812843323 experiment 0.864166555423551 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOPEY2 ENSG00000142197 CDS Human protein_coding chr21:37612088 chr21:37612093 synonymous SNV . 0 26 hm5C_associated_SNPs_14422 0 0 1 0 1 cytosol 1 0.500231647898535 1 0.99953670420293 hm5C_site_16173 DeepMRMD:1;iRNA_m5C:0.99953670420293 16174 chr21 38558042 38558042 1 + A G rs143235006 38558059 + 38558039 38558079 41 AACATGAATTACATCTGGATCAGTCCCTTGAAATCAGGCAA AACGTGAATTACATCTGGATCAGTCCCTTGAAATCAGGCAA < 41bp 1 0.0571830080188918 1 0.203342437744141 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC3 ENSG00000182670 CDS Human protein_coding chr21:38558059 chr21:38558042 nonsynonymous SNV 0.874 0 4 hm5C_associated_SNPs_14423 0 0 1 0 1 Cytosol 1 0.500231643921113 1 0.999536712157774 hm5C_site_16174 DeepMRMD:1;iRNA_m5C:0.999536712157774 16175 chr21 40191431 40191431 1 + T A rs457705 40191451 + 40191431 40191471 41 TCCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT ACCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT < 41bp 1 0.593761265742949 1 0.394904345273972 experiment 0.812477468514102 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191451 chr21:40191431 synonymous SNV . 0 1 hm5C_associated_SNPs_14424 0 0 1 0 1 Ribosome 1 0.500231643921115 1 0.999536712157769 hm5C_site_16175 DeepMRMD:1;iRNA_m5C:0.999536712157769 16176 chr21 40191638 40191638 1 + A G rs461155 40191635 + 40191615 40191655 41 TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACC TACATCCAAGAGAGGAGTGACCCGGTGGAGCAAGGCAAACC < 41bp 1 0.420992937759969 1 0.274870336055756 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191635 chr21:40191638 synonymous SNV . 0 24 hm5C_associated_SNPs_14425 0 0 0 0 1 Ribosome 1 0.50023164392033 1 0.99953671215934 hm5C_site_16176 DeepMRMD:1;iRNA_m5C:0.99953671215934 16177 chr21 40191638 40191638 1 + A G rs461155 40191636 + 40191616 40191656 41 ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCA ACATCCAAGAGAGGAGTGACCCGGTGGAGCAAGGCAAACCA < 41bp 1 0.602510302573343 1 0.734512805938721 experiment 0.794979394853314 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191636 chr21:40191638 synonymous SNV . 0 23 hm5C_associated_SNPs_14426 0 0 0 0 1 Ribosome 1 0.500231646394279 0.530974388122558 0.999536707211441 hm5C_site_16177 DeepMRMD:0.530974388122558;iRNA_m5C:0.999536707211441 16178 chr21 40191638 40191638 1 + A G rs461155 40191637 + 40191617 40191657 41 CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCAG CATCCAAGAGAGGAGTGACCCGGTGGAGCAAGGCAAACCAG < 41bp 1 0.699489271384764 1 0.808789849281311 experiment 0.601021457230471 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191637 chr21:40191638 synonymous SNV . 0 22 hm5C_associated_SNPs_14427 0 0 0 0 1 Ribosome 1 0.500231643921167 0.382420301437378 0.999536712157666 hm5C_site_16178 DeepMRMD:0.382420301437378;iRNA_m5C:0.999536712157666 16179 chr21 40752394 40752394 1 + C A rs139208510 40752408 + 40752388 40752428 41 CCTCCTCCCGTCCTTCTCATCCTTCGTAAGTGGCTGCCTGG CCTCCTACCGTCCTTCTCATCCTTCGTAAGTGGCTGCCTGG < 41bp 1 0.072720293741157 1 0.187917739152908 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WRB;WRB-SH3BGR ENSG00000182093 CDS Human protein_coding chr21:40752408 chr21:40752394 synonymous SNV . 0 7 hm5C_associated_SNPs_14428 0 0 1 0 1 unknown 1 0.500231643920816 1 0.999536712158368 hm5C_site_16179 DeepMRMD:1;iRNA_m5C:0.999536712158368 16180 chr21 44001199 44001199 1 + T C rs389157 44001185 + 44001165 44001205 41 AAGTCACCGTCATCCCAGCCCCTGGCCTTCCTGCTGCCCTC AAGTCACCGTCATCCCAGCCCCTGGCCTTCCTGCCGCCCTC < 41bp 1 0.287403740953835 1 0.131621807813644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC37A1 ENSG00000160190 UTR3 Human protein_coding chr21:44001185 chr21:44001199 . . 0 35 hm5C_associated_SNPs_14429 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16180 DeepMRMD:1;iRNA_m5C:0.999536712157815 16181 chr21 44985370 44985370 1 + A G rs112493576 44985363 + 44985343 44985383 41 CAGGTGAGGCTTCCCGCCTGCCGCATTACAACAAGCGCTCG CAGGTGAGGCTTCCCGCCTGCCGCATTGCAACAAGCGCTCG < 41bp 1 0.632564777135076 1 0.627653837203979 experiment 0.734870445729847 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSF2BP ENSG00000234289 ncRNA_exonic Human protein_coding chr21:44985363 chr21:44985370 . . 0 28 hm5C_associated_SNPs_14432 0 0 0 0 0 nucleus 1 0.500231643921092 0.744692325592042 0.999536712157815 hm5C_site_16181 DeepMRMD:0.744692325592042;iRNA_m5C:0.999536712157815 16182 chr21 44985432 44985432 1 + G A rs113294006 44985412 + 44985392 44985432 41 CTCCAGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCG CTCCAGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCA < 41bp 1 0.312579132501727 1 0.181694567203522 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSF2BP ENSG00000234289 ncRNA_exonic Human protein_coding chr21:44985412 chr21:44985432 . . 0 41 hm5C_associated_SNPs_14433 0 0 0 0 0 nucleus 1 0.500231644794478 1 0.999536710411045 hm5C_site_16182 DeepMRMD:1;iRNA_m5C:0.999536710411045 16183 chr21 44985432 44985432 1 + G A rs113294006 44985413 + 44985393 44985433 41 TCCAGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGG TCCAGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCAG < 41bp 1 0.500220166907393 1 0.153056412935257 experiment 0.999559666185214 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSF2BP ENSG00000234289 ncRNA_exonic Human protein_coding chr21:44985413 chr21:44985432 . . 0 40 hm5C_associated_SNPs_14434 0 0 0 0 0 nucleus 1 0.500231643512684 1 0.999536712974632 hm5C_site_16183 DeepMRMD:1;iRNA_m5C:0.999536712974632 16184 chr21 45106786 45106786 1 + T G rs138939671 45106800 + 45106780 45106820 41 AAACTTTTAGAGAAAACTAACTTGGAAAAGGAGAAAGGTAA AAACTTGTAGAGAAAACTAACTTGGAAAAGGAGAAAGGTAA < 41bp 1 0.253146266434951 1 0.168463617563248 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1B ENSG00000160208 CDS Human protein_coding chr21:45106800 chr21:45106786 nonsynonymous SNV 0.080 0 7 hm5C_associated_SNPs_14435 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_16184 DeepMRMD:1;iRNA_m5C:0.999536712157813 16185 chr21 45168884 45168884 1 + G A rs11539534 45168891 + 45168871 45168911 41 GCCAGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAA GCCAGTACGTCCCAGAGGACCTCCTTCCCGTCTACAAAGAA < 41bp 1 0.167741099076644 1 0.214289635419846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45168891 chr21:45168884 synonymous SNV . 0 14 hm5C_associated_SNPs_14436 0 0 1 0 2 Ribosome 1 0.500231612585338 1 0.999536774829324 hm5C_site_16185 DeepMRMD:1;iRNA_m5C:0.999536774829324 16186 chr21 45168884 45168884 1 + G A rs11539534 45168893 + 45168873 45168913 41 CAGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAAAA CAGTACGTCCCAGAGGACCTCCTTCCCGTCTACAAAGAAAA < 41bp 1 0.00319008227764204 1 0.142032355070114 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45168893 chr21:45168884 synonymous SNV . 0 12 hm5C_associated_SNPs_14437 0 0 1 0 2 Ribosome 1 0.500231644327149 1 0.999536711345701 hm5C_site_16186 DeepMRMD:1;iRNA_m5C:0.999536711345701 16187 chr21 45168884 45168884 1 + G A rs11539534 45168894 + 45168874 45168914 41 AGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAAAAA AGTACGTCCCAGAGGACCTCCTTCCCGTCTACAAAGAAAAA < 41bp 1 0.0192815913439575 1 0.127814888954163 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45168894 chr21:45168884 synonymous SNV . 0 11 hm5C_associated_SNPs_14438 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16187 DeepMRMD:1;iRNA_m5C:0.999536712157815 16188 chr21 45168914 45168914 1 + A G rs112579284 45168894 + 45168874 45168914 41 AGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAAAAA AGTACGTCCCGGAGGACCTCCTTCCCGTCTACAAAGAAAAG < 41bp 1 0.0219667370493916 1 0.139310330152512 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45168894 chr21:45168914 synonymous SNV . 0 41 hm5C_associated_SNPs_14439 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16188 DeepMRMD:1;iRNA_m5C:0.999536712157815 16189 chr21 45176621 45176621 1 + C G rs17004606 45176637 + 45176617 45176657 41 CTCTCAGCTACCCGCGGGACCTCTTGTAACCCATCGGCATC CTCTGAGCTACCCGCGGGACCTCTTGTAACCCATCGGCATC < 41bp 1 0.130082234692746 1 0.01759272813797 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDXK ENSG00000160209 UTR3 Human protein_coding chr21:45176637 chr21:45176621 . . 0 5 hm5C_associated_SNPs_14440 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16189 DeepMRMD:1;iRNA_m5C:0.999536712157815 16190 chr21 45177999 45177999 1 + C T rs546389404 45178014 + 45177994 45178034 41 TGCCCCTGCAGTGGGTGTTACGGGCGGTGTGCCCTGGCGAG TGCCCTTGCAGTGGGTGTTACGGGCGGTGTGCCCTGGCGAG < 41bp 1 0.613381673429808 1 0.776283740997314 experiment 0.773236653140384 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PDXK ENSG00000160209 UTR3 Human protein_coding chr21:45178014 chr21:45177999 . . 0 6 hm5C_associated_SNPs_14441 0 0 1 0 0 Ribosome 1 0.50023164392125 0.447432518005372 0.999536712157499 hm5C_site_16190 DeepMRMD:0.447432518005372;iRNA_m5C:0.999536712157499 16191 chr21 45178031 45178031 1 + C A rs571276950 45178014 + 45177994 45178034 41 TGCCCCTGCAGTGGGTGTTACGGGCGGTGTGCCCTGGCGAG TGCCCCTGCAGTGGGTGTTACGGGCGGTGTGCCCTGGAGAG < 41bp 1 0.587580879017455 1 0.697782039642334 experiment 0.824838241965091 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PDXK ENSG00000160209 UTR3 Human protein_coding chr21:45178014 chr21:45178031 . . 0 38 hm5C_associated_SNPs_14442 0 0 1 0 0 Ribosome 1 0.500231643921092 0.604435920715332 0.999536712157815 hm5C_site_16191 DeepMRMD:0.604435920715332;iRNA_m5C:0.999536712157815 16192 chr21 45178438 45178438 1 + C A rs4819309 45178448 + 45178428 45178468 41 TTCGTCTCTCCTGACTTCGGCAGAGGCCCCTGGTGGCCTTC TTCGTCTCTCATGACTTCGGCAGAGGCCCCTGGTGGCCTTC < 41bp 1 0.406209569433089 1 0.900708317756653 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDXK ENSG00000160209 UTR3 Human protein_coding chr21:45178448 chr21:45178438 . . 0 11 hm5C_associated_SNPs_14443 0 0 1 0 0 Ribosome 1 0.500231643921195 0.198583364486694 0.999536712157609 hm5C_site_16192 DeepMRMD:0.198583364486694;iRNA_m5C:0.999536712157609 16193 chr21 45178456 45178456 1 + C T rs182500341 45178448 + 45178428 45178468 41 TTCGTCTCTCCTGACTTCGGCAGAGGCCCCTGGTGGCCTTC TTCGTCTCTCCTGACTTCGGCAGAGGCCTCTGGTGGCCTTC < 41bp 1 0.397360417056574 1 0.888582110404968 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDXK ENSG00000160209 UTR3 Human protein_coding chr21:45178448 chr21:45178456 . . 0 29 hm5C_associated_SNPs_14444 0 0 1 0 0 Ribosome 1 0.50023164392108 0.222835779190064 0.999536712157839 hm5C_site_16193 DeepMRMD:0.222835779190064;iRNA_m5C:0.999536712157839 16194 chr21 45179365 45179365 1 + A T rs34480572 45179362 + 45179342 45179382 41 GTGTCCATGTTTATGGAGATCAGAGGTGTCCCCACTGTGTG GTGTCCATGTTTATGGAGATCAGTGGTGTCCCCACTGTGTG < 41bp 1 0.565145509805123 1 0.356433868408203 experiment 0.869708980389755 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDXK ENSG00000160209 UTR3 Human protein_coding chr21:45179362 chr21:45179365 . . 0 24 hm5C_associated_SNPs_14445 0 0 1 0 0 Ribosome 1 0.500231646788139 1 0.999536706423722 hm5C_site_16194 DeepMRMD:1;iRNA_m5C:0.999536706423722 16195 chr21 45180338 45180338 1 + A G rs8133485 45180353 + 45180333 45180373 41 CAGGCATGAGCCAGTGCACCCGGCGGAATCTTGGAATTTTT CAGGCGTGAGCCAGTGCACCCGGCGGAATCTTGGAATTTTT < 41bp 1 0.601204324386408 1 0.511409282684326 experiment 0.797591351227183 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDXK ENSG00000160209 UTR3 Human protein_coding chr21:45180353 chr21:45180338 . . 0 6 hm5C_associated_SNPs_14446 0 0 1 0 0 Ribosome 1 0.500231643921093 0.977181434631348 0.999536712157814 hm5C_site_16195 DeepMRMD:0.977181434631348;iRNA_m5C:0.999536712157814 16196 chr21 45180340 45180340 1 + G A rs548296691 45180353 + 45180333 45180373 41 CAGGCATGAGCCAGTGCACCCGGCGGAATCTTGGAATTTTT CAGGCATAAGCCAGTGCACCCGGCGGAATCTTGGAATTTTT < 41bp 1 0.573897523961696 1 0.403981506824493 experiment 0.852204952076608 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDXK ENSG00000160209 UTR3 Human protein_coding chr21:45180353 chr21:45180340 . . 0 8 hm5C_associated_SNPs_14447 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16196 DeepMRMD:1;iRNA_m5C:0.999536712157815 16197 chr21 45180354 45180354 1 + G A rs537717783 45180353 + 45180333 45180373 41 CAGGCATGAGCCAGTGCACCCGGCGGAATCTTGGAATTTTT CAGGCATGAGCCAGTGCACCCAGCGGAATCTTGGAATTTTT < 41bp 1 0.575942929191105 1 0.377723306417465 experiment 0.848114141617791 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDXK ENSG00000160209 UTR3 Human protein_coding chr21:45180353 chr21:45180354 . . 0 22 hm5C_associated_SNPs_14448 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16197 DeepMRMD:1;iRNA_m5C:0.999536712157815 16198 chr21 45181446 45181446 1 + G A rs762407 45181445 + 45181425 45181465 41 TCGCCTCGCCCACCGGCCTGCGAAGCCAGCATCTCCGTGAA TCGCCTCGCCCACCGGCCTGCAAAGCCAGCATCTCCGTGAA < 41bp 1 0.402211160533626 1 0.367080837488174 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDXK ENSG00000160209 UTR3 Human protein_coding chr21:45181445 chr21:45181446 . . 0 22 hm5C_associated_SNPs_14449 0 1 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16198 DeepMRMD:1;iRNA_m5C:0.999536712157815 16199 chr21 45181944 45181944 1 + A G rs111429557 45181952 + 45181932 45181972 41 TCCCTCCGTGGAATGGAGCTCAGCTCTTCGGAGGCATCAAA TCCCTCCGTGGAGTGGAGCTCAGCTCTTCGGAGGCATCAAA < 41bp 1 0.562627304980294 1 0.47877910733223 experiment 0.874745390039411 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDXK ENSG00000160209 UTR3 Human protein_coding chr21:45181952 chr21:45181944 . . 0 13 hm5C_associated_SNPs_14450 0 0 1 0 0 Ribosome 1 0.500231519360268 1 0.999536961279465 hm5C_site_16199 DeepMRMD:1;iRNA_m5C:0.999536961279465 16200 chr21 45181961 45181961 1 + G A rs372165329 45181952 + 45181932 45181972 41 TCCCTCCGTGGAATGGAGCTCAGCTCTTCGGAGGCATCAAA TCCCTCCGTGGAATGGAGCTCAGCTCTTCAGAGGCATCAAA < 41bp 1 0.514277068671958 1 0.148986130952835 experiment 0.971445862656083 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDXK ENSG00000160209 UTR3 Human protein_coding chr21:45181952 chr21:45181961 . . 0 30 hm5C_associated_SNPs_14451 0 0 1 0 0 Ribosome 1 0.500231643921072 1 0.999536712157855 hm5C_site_16200 DeepMRMD:1;iRNA_m5C:0.999536712157855 16201 chr21 45181967 45181967 1 + A C rs112055173 45181952 + 45181932 45181972 41 TCCCTCCGTGGAATGGAGCTCAGCTCTTCGGAGGCATCAAA TCCCTCCGTGGAATGGAGCTCAGCTCTTCGGAGGCCTCAAA < 41bp 1 0.566476081843082 1 0.655671179294586 experiment 0.867047836313837 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDXK ENSG00000160209 UTR3 Human protein_coding chr21:45181952 chr21:45181967 . . 0 36 hm5C_associated_SNPs_14452 0 0 1 0 0 Ribosome 1 0.500231643926214 0.688657641410828 0.999536712147571 hm5C_site_16201 DeepMRMD:0.688657641410828;iRNA_m5C:0.999536712147571 16202 chr21 45217929 45217929 1 + T C rs2838379 45217920 + 45217900 45217940 41 GCGTCGGACAGTGATGAGTCCTCTGAGGGTGGTGAGCGTGG GCGTCGGACAGTGATGAGTCCTCTGAGGGCGGTGAGCGTGG < 41bp 1 0.43496486927593 1 0.30589359998703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217920 chr21:45217929 synonymous SNV . 0 30 hm5C_associated_SNPs_14453 0 0 1 0 1 Ribosome 1 0.500231628917737 1 0.999536742164526 hm5C_site_16202 DeepMRMD:1;iRNA_m5C:0.999536742164526 16203 chr21 45217929 45217929 1 + T C rs2838379 45217944 + 45217924 45217964 41 GAGGGTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTC GAGGGCGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTC < 41bp 1 0.639755152573427 1 0.471365094184875 experiment 0.720489694853145 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217944 chr21:45217929 synonymous SNV . 0 6 hm5C_associated_SNPs_14454 0 0 1 0 1 Ribosome 1 0.500231620258501 1 0.999536759482998 hm5C_site_16203 DeepMRMD:1;iRNA_m5C:0.999536759482998 16204 chr21 45217929 45217929 1 + T C rs2838379 45217948 + 45217928 45217968 41 GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG GCGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG < 41bp 1 0.203258621213743 1 0.215269535779953 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217948 chr21:45217929 synonymous SNV . 0 2 hm5C_associated_SNPs_14455 0 0 1 0 1 Ribosome 1 0.50023164665605 1 0.999536706687901 hm5C_site_16204 DeepMRMD:1;iRNA_m5C:0.999536706687901 16205 chr21 45217936 45217936 1 + C G rs200937759 45217920 + 45217900 45217940 41 GCGTCGGACAGTGATGAGTCCTCTGAGGGTGGTGAGCGTGG GCGTCGGACAGTGATGAGTCCTCTGAGGGTGGTGAGGGTGG < 41bp 1 0.374723293694763 1 0.356832146644592 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217920 chr21:45217936 nonsynonymous SNV 0.000 0 37 hm5C_associated_SNPs_14456 0 0 1 0 1 Ribosome 1 0.500231643849078 1 0.999536712301845 hm5C_site_16205 DeepMRMD:1;iRNA_m5C:0.999536712301845 16206 chr21 45217936 45217936 1 + C G rs200937759 45217944 + 45217924 45217964 41 GAGGGTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTC GAGGGTGGTGAGGGTGGAGACGCGCTGTCCCAGAAGAGGTC < 41bp 1 0.692869152827219 1 0.571770250797272 experiment 0.614261694345561 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217944 chr21:45217936 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_14457 0 0 1 0 1 Ribosome 1 0.500231643850507 0.856459498405456 0.999536712298986 hm5C_site_16206 DeepMRMD:0.856459498405456;iRNA_m5C:0.999536712298986 16207 chr21 45217936 45217936 1 + C G rs200937759 45217948 + 45217928 45217968 41 GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG GTGGTGAGGGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG < 41bp 1 0.229507665437229 1 0.339119106531143 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217948 chr21:45217936 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_14458 0 0 1 0 1 Ribosome 1 0.500231644099664 1 0.999536711800671 hm5C_site_16207 DeepMRMD:1;iRNA_m5C:0.999536711800671 16208 chr21 45217963 45217963 1 + T C rs200385471 45217944 + 45217924 45217964 41 GAGGGTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTC GAGGGTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGCC < 41bp 1 0.626489098369508 1 0.510167837142944 experiment 0.747021803260985 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217944 chr21:45217963 nonsynonymous SNV 0.016 0 40 hm5C_associated_SNPs_14459 0 0 1 0 1 Ribosome 1 0.500231643297178 0.979664325714112 0.999536713405644 hm5C_site_16208 DeepMRMD:0.979664325714112;iRNA_m5C:0.999536713405644 16209 chr21 45217963 45217963 1 + T C rs200385471 45217948 + 45217928 45217968 41 GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGCCTGAG < 41bp 1 0.221885273099029 1 0.385236293077469 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217948 chr21:45217963 nonsynonymous SNV 0.016 0 36 hm5C_associated_SNPs_14460 0 0 1 0 1 Ribosome 1 0.500231643921098 1 0.999536712157803 hm5C_site_16209 DeepMRMD:1;iRNA_m5C:0.999536712157803 16210 chr21 45217963 45217963 1 + T C rs200385471 45217964 + 45217944 45217984 41 CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG CGCGCTGTCCCAGAAGAGGCCTGAGAAGCCGCCCGCAGGTG < 41bp 1 0.625764737319275 1 0.22825813293457 experiment 0.748470525361451 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217964 chr21:45217963 nonsynonymous SNV 0.016 0 20 hm5C_associated_SNPs_14461 0 0 1 0 1 Ribosome 1 0.500231720323335 1 0.99953655935333 hm5C_site_16210 DeepMRMD:1;iRNA_m5C:0.99953655935333 16211 chr21 45217973 45217973 1 + C A rs58028593 45217964 + 45217944 45217984 41 CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG CGCGCTGTCCCAGAAGAGGTCTGAGAAGCAGCCCGCAGGTG < 41bp 1 0.686154837288497 1 0.199104428291321 experiment 0.627690325423006 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217964 chr21:45217973 nonsynonymous SNV 0.001 0 30 hm5C_associated_SNPs_14462 0 0 1 0 1 Ribosome 1 0.500231643920299 1 0.999536712159403 hm5C_site_16211 DeepMRMD:1;iRNA_m5C:0.999536712159403 16212 chr21 45217979 45217979 1 + C T rs117749073 45217964 + 45217944 45217984 41 CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGTAGGTG < 41bp 1 0.650130013130928 1 0.189361721277237 experiment 0.699739973738145 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217964 chr21:45217979 nonsynonymous SNV 0.006 0 36 hm5C_associated_SNPs_14463 0 0 1 0 1 Ribosome 1 0.50023172143316 1 0.99953655713368 hm5C_site_16212 DeepMRMD:1;iRNA_m5C:0.99953655713368 16213 chr21 45544594 45544594 1 + T C rs2187313 45544584 + 45544564 45544604 41 AAGAGGTTCGAGATCTCTTGCAACCTGTCTTTGGACGCCAT AAGAGGTTCGAGATCTCTTGCAACCTGTCTCTGGACGCCAT < 41bp 1 0.31203341963895 1 0.0810606181621552 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45544584 chr21:45544594 synonymous SNV . 0 31 hm5C_associated_SNPs_14464 0 0 1 0 1 Nucleus 1 0.500231644237094 1 0.999536711525813 hm5C_site_16213 DeepMRMD:1;iRNA_m5C:0.999536711525813 16214 chr21 45550862 45550862 1 + C T rs62226723 45550867 + 45550847 45550887 41 CGGCACGCACTGGCACCTGGCCCCAGGAGCGGGGCCGTGTG CGGCACGCACTGGCATCTGGCCCCAGGAGCGGGGCCGTGTG < 41bp 1 0.662757191003912 1 0.195025771856308 experiment 0.674485617992175 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PWP2 ENSG00000241945 UTR3 Human protein_coding chr21:45550867 chr21:45550862 . . 0 16 hm5C_associated_SNPs_14465 0 0 0 0 0 Nucleus 1 0.500231643906685 1 0.99953671218663 hm5C_site_16214 DeepMRMD:1;iRNA_m5C:0.99953671218663 16215 chr21 45550862 45550862 1 + C T rs62226723 45550868 + 45550848 45550888 41 GGCACGCACTGGCACCTGGCCCCAGGAGCGGGGCCGTGTGA GGCACGCACTGGCATCTGGCCCCAGGAGCGGGGCCGTGTGA < 41bp 1 0.537030612484991 1 0.19576758146286 experiment 0.925938775030019 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PWP2 ENSG00000241945 UTR3 Human protein_coding chr21:45550868 chr21:45550862 . . 0 15 hm5C_associated_SNPs_14466 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_16215 DeepMRMD:1;iRNA_m5C:0.999536712157815 16216 chr21 45550862 45550862 1 + C T rs62226723 45550869 + 45550849 45550889 41 GCACGCACTGGCACCTGGCCCCAGGAGCGGGGCCGTGTGAA GCACGCACTGGCATCTGGCCCCAGGAGCGGGGCCGTGTGAA < 41bp 1 0.67069388648867 1 0.73359352350235 experiment 0.65861222702266 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PWP2 ENSG00000241945 UTR3 Human protein_coding chr21:45550869 chr21:45550862 . . 0 14 hm5C_associated_SNPs_14467 0 0 0 0 0 Nucleus 1 0.500231643920317 0.5328129529953 0.999536712159366 hm5C_site_16216 DeepMRMD:0.5328129529953;iRNA_m5C:0.999536712159366 16217 chr21 45550862 45550862 1 + C T rs62226723 45550881 + 45550861 45550901 41 ACCTGGCCCCAGGAGCGGGGCCGTGTGAACGGTGATGAATG ATCTGGCCCCAGGAGCGGGGCCGTGTGAACGGTGATGAATG < 41bp 1 0.240372756841045 1 0.190965950489044 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PWP2 ENSG00000241945 UTR3 Human protein_coding chr21:45550881 chr21:45550862 . . 0 2 hm5C_associated_SNPs_14468 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16217 DeepMRMD:1;iRNA_m5C:0.999536712157815 16218 chr21 45550862 45550862 1 + C T rs62226723 45550882 + 45550862 45550902 41 CCTGGCCCCAGGAGCGGGGCCGTGTGAACGGTGATGAATGT TCTGGCCCCAGGAGCGGGGCCGTGTGAACGGTGATGAATGT < 41bp 1 0.570499241995512 1 0.375102967023849 experiment 0.859001516008976 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PWP2 ENSG00000241945 UTR3 Human protein_coding chr21:45550882 chr21:45550862 . . 0 1 hm5C_associated_SNPs_14469 0 0 0 0 0 Nucleus 1 0.500231634764807 1 0.999536730470385 hm5C_site_16218 DeepMRMD:1;iRNA_m5C:0.999536730470385 16219 chr21 45550876 45550876 1 + C T rs9306175 45550867 + 45550847 45550887 41 CGGCACGCACTGGCACCTGGCCCCAGGAGCGGGGCCGTGTG CGGCACGCACTGGCACCTGGCCCCAGGAGTGGGGCCGTGTG < 41bp 1 0.597199005150254 1 0.231043130159378 experiment 0.805601989699491 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PWP2 ENSG00000241945 UTR3 Human protein_coding chr21:45550867 chr21:45550876 . . 0 30 hm5C_associated_SNPs_14470 0 0 1 0 0 Nucleus 1 0.500231641868953 1 0.999536716262094 hm5C_site_16219 DeepMRMD:1;iRNA_m5C:0.999536716262094 16220 chr21 45550876 45550876 1 + C T rs9306175 45550868 + 45550848 45550888 41 GGCACGCACTGGCACCTGGCCCCAGGAGCGGGGCCGTGTGA GGCACGCACTGGCACCTGGCCCCAGGAGTGGGGCCGTGTGA < 41bp 1 0.539785596579205 1 0.234072715044022 experiment 0.92042880684159 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PWP2 ENSG00000241945 UTR3 Human protein_coding chr21:45550868 chr21:45550876 . . 0 29 hm5C_associated_SNPs_14471 0 0 1 0 0 Nucleus 1 0.500231643921312 1 0.999536712157376 hm5C_site_16220 DeepMRMD:1;iRNA_m5C:0.999536712157376 16221 chr21 45550876 45550876 1 + C T rs9306175 45550869 + 45550849 45550889 41 GCACGCACTGGCACCTGGCCCCAGGAGCGGGGCCGTGTGAA GCACGCACTGGCACCTGGCCCCAGGAGTGGGGCCGTGTGAA < 41bp 1 0.653640635438196 1 0.639004051685333 experiment 0.692718729123608 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PWP2 ENSG00000241945 UTR3 Human protein_coding chr21:45550869 chr21:45550876 . . 0 28 hm5C_associated_SNPs_14472 0 0 1 0 0 Nucleus 1 0.500231643951777 0.721991896629334 0.999536712096446 hm5C_site_16221 DeepMRMD:0.721991896629334;iRNA_m5C:0.999536712096446 16222 chr21 45550876 45550876 1 + C T rs9306175 45550881 + 45550861 45550901 41 ACCTGGCCCCAGGAGCGGGGCCGTGTGAACGGTGATGAATG ACCTGGCCCCAGGAGTGGGGCCGTGTGAACGGTGATGAATG < 41bp 1 0.276903427401092 1 0.165766984224319 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PWP2 ENSG00000241945 UTR3 Human protein_coding chr21:45550881 chr21:45550876 . . 0 16 hm5C_associated_SNPs_14473 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16222 DeepMRMD:1;iRNA_m5C:0.999536712157815 16223 chr21 45550876 45550876 1 + C T rs9306175 45550882 + 45550862 45550902 41 CCTGGCCCCAGGAGCGGGGCCGTGTGAACGGTGATGAATGT CCTGGCCCCAGGAGTGGGGCCGTGTGAACGGTGATGAATGT < 41bp 1 0.578872037648864 1 0.299121677875519 experiment 0.842255924702273 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PWP2 ENSG00000241945 UTR3 Human protein_coding chr21:45550882 chr21:45550876 . . 0 15 hm5C_associated_SNPs_14474 0 0 1 0 0 Nucleus 1 0.500231643923226 1 0.999536712153547 hm5C_site_16223 DeepMRMD:1;iRNA_m5C:0.999536712153547 16224 chr21 45560133 45560133 1 + A T rs199921521 45560135 + 45560115 45560155 41 CTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAA CTTTTGTCTCCCGGTAGGTGCACGTTTGCCGTGGACGGGAA < 41bp 1 0.566040322725746 1 0.131549298763275 experiment 0.867919354548509 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560135 chr21:45560133 nonsynonymous SNV 0.761 2 19 hm5C_associated_SNPs_14475 0 0 1 0 2 Ribosome 1 0.500231643999476 1 0.999536712001049 hm5C_site_16224 DeepMRMD:1;iRNA_m5C:0.999536712001049 16225 chr21 45560145 45560145 1 + G A rs17264865 45560135 + 45560115 45560155 41 CTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAA CTTTTGTCTCCCGGTAGGAGCACGTTTGCCATGGACGGGAA < 41bp 1 0.616842563452709 1 0.252911806106567 experiment 0.766314873094582 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560135 chr21:45560145 nonsynonymous SNV 0.821 3 31 hm5C_associated_SNPs_14476 0 0 1 0 2 Ribosome 1 0.500231643921751 1 0.999536712156498 hm5C_site_16225 DeepMRMD:1;iRNA_m5C:0.999536712156498 16226 chr21 45560167 45560167 1 + T C rs146071545 45560184 + 45560164 45560204 41 AGGTGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCAC AGGCGAATAAAGAAGTGGAGCGTGTCCTGAAGGAGTTCCAC < 41bp 1 0.266334338726641 1 0.22396457195282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560184 chr21:45560167 nonsynonymous SNV 0.003 4 4 hm5C_associated_SNPs_14477 0 0 1 0 2 Ribosome 1 0.500231643710162 1 0.999536712579677 hm5C_site_16226 DeepMRMD:1;iRNA_m5C:0.999536712579677 16227 chr21 45736383 45736383 1 + G A rs9980790 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACACCCTCTGCCTTCGACCGGA < 41bp 1 0.337114184600485 1 0.147743821144104 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736383 synonymous SNV . 0 22 hm5C_associated_SNPs_14479 0 0 1 0 2 Ribosome 1 0.500231644088747 1 0.999536711822507 hm5C_site_16227 DeepMRMD:1;iRNA_m5C:0.999536711822507 16228 chr21 45736383 45736383 1 + G A rs9980790 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACACCCTCTGCCTTCGACCGGATC < 41bp 1 0.0939851795540332 1 0.100103437900543 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736383 synonymous SNV . 0 20 hm5C_associated_SNPs_14480 0 0 1 0 2 Ribosome 1 0.500231644788695 1 0.999536710422609 hm5C_site_16228 DeepMRMD:1;iRNA_m5C:0.999536710422609 16229 chr21 45736383 45736383 1 + G A rs9980790 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACACCCTCTGCCTTCGACCGGATCC < 41bp 1 0.10625685228149 1 0.0492707490921021 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736383 synonymous SNV . 0 19 hm5C_associated_SNPs_14481 0 0 1 0 2 Ribosome 1 0.500231643855889 1 0.999536712288221 hm5C_site_16229 DeepMRMD:1;iRNA_m5C:0.999536712288221 16230 chr21 45736383 45736383 1 + G A rs9980790 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACACCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.466847069871732 1 0.481618613004684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736383 synonymous SNV . 0 18 hm5C_associated_SNPs_14482 0 0 1 0 2 Ribosome 1 0.500232069072858 1 0.999535861854283 hm5C_site_16230 DeepMRMD:1;iRNA_m5C:0.999535861854283 16231 chr21 45736395 45736395 1 + C G rs139920536 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTGGACCGGA < 41bp 1 0.403751992907717 1 0.35181799530983 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736395 nonsynonymous SNV 0.570 5 34 hm5C_associated_SNPs_14483 0 0 1 0 2 Ribosome 1 0.500231643933159 1 0.999536712133682 hm5C_site_16231 DeepMRMD:1;iRNA_m5C:0.999536712133682 16232 chr21 45736395 45736395 1 + C G rs139920536 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTGGACCGGATC < 41bp 1 0.0912480020668787 1 0.130327850580215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736395 nonsynonymous SNV 0.570 5 32 hm5C_associated_SNPs_14484 0 0 1 0 2 Ribosome 1 0.500231643923086 1 0.999536712153827 hm5C_site_16232 DeepMRMD:1;iRNA_m5C:0.999536712153827 16233 chr21 45736395 45736395 1 + C G rs139920536 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACGCCCTCTGCCTTGGACCGGATCC < 41bp 1 0.0786011268544399 1 0.126478672027588 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736395 nonsynonymous SNV 0.570 5 31 hm5C_associated_SNPs_14485 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_16233 DeepMRMD:1;iRNA_m5C:0.999536712157816 16234 chr21 45736395 45736395 1 + C G rs139920536 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACGCCCTCTGCCTTGGACCGGATCCT < 41bp 1 0.370977142621927 1 0.51266211271286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736395 nonsynonymous SNV 0.570 5 30 hm5C_associated_SNPs_14486 0 0 1 0 2 Ribosome 1 0.500231643921363 0.97467577457428 0.999536712157274 hm5C_site_16234 DeepMRMD:0.97467577457428;iRNA_m5C:0.999536712157274 16235 chr21 45740045 45740045 1 + G A rs11908697 45740065 + 45740045 45740085 41 GGCGCCCACAGAGGGAGGAACGGGCTCAGTTATTCTGCAGC AGCGCCCACAGAGGGAGGAACGGGCTCAGTTATTCTGCAGC < 41bp 1 0.500817253516732 1 0.496525496244431 experiment 0.998365492966537 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PFKL ENSG00000141959 intronic Human protein_coding chr21:45740065 chr21:45740045 . . 0 1 hm5C_associated_SNPs_14487 0 0 1 0 1 Ribosome 1 0.500231640243598 1 0.999536719512803 hm5C_site_16235 DeepMRMD:1;iRNA_m5C:0.999536719512803 16236 chr21 45740082 45740082 1 + C T rs375310320 45740065 + 45740045 45740085 41 GGCGCCCACAGAGGGAGGAACGGGCTCAGTTATTCTGCAGC GGCGCCCACAGAGGGAGGAACGGGCTCAGTTATTCTGTAGC < 41bp 1 0.472494125889621 1 0.562040567398071 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PFKL ENSG00000141959 intronic Human protein_coding chr21:45740065 chr21:45740082 . . 0 38 hm5C_associated_SNPs_14488 0 0 0 0 0 Ribosome 1 0.500231643921092 0.875918865203858 0.999536712157815 hm5C_site_16236 DeepMRMD:0.875918865203858;iRNA_m5C:0.999536712157815 16237 chr21 45878113 45878113 1 + C T rs141803969 45878098 + 45878078 45878118 41 TGTGCCTGATGCGGGAGGCCCTGCCCCAGGGCGATCTCAGC TGTGCCTGATGCGGGAGGCCCTGCCCCAGGGCGATTTCAGC < 41bp 1 0.410579346261623 1 0.203633308410645 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRRC3 ENSG00000160233 UTR3 Human protein_coding chr21:45878098 chr21:45878113 . . 0 36 hm5C_associated_SNPs_14489 0 0 0 0 0 exosome 1 0.5002316493317 1 0.999536701336601 hm5C_site_16237 DeepMRMD:1;iRNA_m5C:0.999536701336601 16238 chr21 46713500 46713500 1 + G A rs78919055 46713488 + 46713468 46713508 41 TCTGGACTCATTGCGGAGTTCCACCCCTGCACGTTGCGGTT TCTGGACTCATTGCGGAGTTCCACCCCTGCACATTGCGGTT < 41bp 1 0.068357845981508 1 0.114769488573074 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LOC642852 ENSG00000223768 ncRNA_intronic Human lincRNA chr21:46713488 chr21:46713500 . . 0 33 hm5C_associated_SNPs_14490 0 0 1 0 0 unknown 1 0.500231644609145 1 0.999536710781711 hm5C_site_16238 DeepMRMD:1;iRNA_m5C:0.999536710781711 16239 chr21 46888610 46888610 1 + G A rs534851819 46888598 + 46888578 46888618 41 TACGTGGACTGTGAGGAGTTCCAGAGAATGCCGCTTGCTCG TACGTGGACTGTGAGGAGTTCCAGAGAATGCCACTTGCTCG < 41bp 1 0.392037021506064 1 0.464513808488846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46888598 chr21:46888610 synonymous SNV . 0 33 hm5C_associated_SNPs_14491 0 0 1 0 1 Nucleus 1 0.500231643912002 1 0.999536712175997 hm5C_site_16239 DeepMRMD:1;iRNA_m5C:0.999536712175997 16240 chr21 46900062 46900062 1 + G A rs61738822 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACAACAAGC < 41bp 1 0.0485315679437501 1 0.0588445067405701 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900062 nonsynonymous SNV 0.846 3 35 hm5C_associated_SNPs_14492 1 0 0 0 2 Nucleus 1 0.500231643918907 1 0.999536712162186 hm5C_site_16240 DeepMRMD:1;iRNA_m5C:0.999536712162186 Knobloch syndrome 1 Knobloch syndrome 1 16241 chr21 46900410 46900410 1 + C T rs2236467 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTTGGGGGCGATCTGGAGGCCCTGCGGGT < 41bp 1 0.0373459918126716 1 0.162252157926559 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900410 synonymous SNV . 0 15 hm5C_associated_SNPs_14493 1 0 1 0 2 Nucleus 1 0.500231639125642 1 0.999536721748716 hm5C_site_16241 DeepMRMD:1;iRNA_m5C:0.999536721748716 Knobloch syndrome 1 Knobloch syndrome 1 16242 chr21 46931109 46931109 1 + G A rs12483377 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCACGCATCTTCTCCTTTAACGGCAAGGACGTCC < 41bp 1 0.04101942464833 1 0.346382081508636 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931109 nonsynonymous SNV 0.595 3 26 hm5C_associated_SNPs_14494 2 1 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16242 DeepMRMD:1;iRNA_m5C:0.999536712157815 Knobloch syndrome 1 Knobloch syndrome 1 16243 chr21 46931109 46931109 1 + G A rs12483377 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCACGCATCTTCTCCTTTAACGGCAAGGACGTCCT < 41bp 1 0.118438262340799 1 0.190991878509521 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931109 nonsynonymous SNV 0.595 3 25 hm5C_associated_SNPs_14495 2 1 1 0 2 Nucleus 1 0.500231644008414 1 0.999536711983172 hm5C_site_16243 DeepMRMD:1;iRNA_m5C:0.999536711983172 Knobloch syndrome 1 Knobloch syndrome 1 16244 chr21 47424502 47424502 1 + A G rs183666840 47424487 + 47424467 47424507 41 TCAAAGCAAGCTCTTCTCCTCAGCTTGGGGCAGCCATTGGC TCAAAGCAAGCTCTTCTCCTCAGCTTGGGGCAGCCGTTGGC < 41bp 1 0.373380410785778 1 0.32304510474205 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL6A1 ENSG00000142156 UTR3 Human protein_coding chr21:47424487 chr21:47424502 . . 0 36 hm5C_associated_SNPs_14496 1 0 1 0 0 exosome 1 0.500231653416307 1 0.999536693167385 hm5C_site_16244 DeepMRMD:1;iRNA_m5C:0.999536693167385 Collagen VI-related myopathy Collagen VI-related myopathy 16245 chr21 47551091 47551091 1 + C G rs113760186 47551074 + 47551054 47551094 41 CCCCTCCCCCATCCCAGGAGCTGAGGTCTTGGTGAGGCCAC CCCCTCCCCCATCCCAGGAGCTGAGGTCTTGGTGAGGGCAC < 41bp 1 0.519820372033153 1 0.298812747001648 experiment 0.960359255933693 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL6A2 ENSG00000142173 intronic Human protein_coding chr21:47551074 chr21:47551091 . . 0 38 hm5C_associated_SNPs_14497 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16245 DeepMRMD:1;iRNA_m5C:0.999536712157815 16246 chr21 47754541 47754541 1 + A G rs61735824 47754537 + 47754517 47754557 41 GTTCACAGTCAGTGACCACCCACCAGAACAGCGTGGGATGT GTTCACAGTCAGTGACCACCCACCGGAACAGCGTGGGATGT < 41bp 1 0.52530557609166 1 0.440201908349991 experiment 0.949388847816679 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47754537 chr21:47754541 synonymous SNV . 0 25 hm5C_associated_SNPs_14498 2 0 1 0 0 Exosome 1 0.500232084104067 1 0.999535831791865 hm5C_site_16246 DeepMRMD:1;iRNA_m5C:0.999535831791865 not specified not specified 16247 chr21 47805891 47805891 1 + A G rs140424584 47805872 + 47805852 47805892 41 CTCCTCTCCATGCTCAAGGCCGACGTCAACCTGTCCCACAG CTCCTCTCCATGCTCAAGGCCGACGTCAACCTGTCCCACGG < 41bp 1 0.284853912471183 1 0.270218253135681 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47805872 chr21:47805891 nonsynonymous SNV 0.000 0 40 hm5C_associated_SNPs_14499 0 0 0 0 1 Exosome 1 0.500231644442061 1 0.999536711115877 hm5C_site_16247 DeepMRMD:1;iRNA_m5C:0.999536711115877 16248 chr21 47831309 47831309 1 + G A rs58559714 47831301 + 47831281 47831321 41 ACAGTCAGGCTGGCAGTCTGCAGAGCGAGCTGCTCTGCTCC ACAGTCAGGCTGGCAGTCTGCAGAGCGAACTGCTCTGCTCC < 41bp 1 0.46204611197901 1 0.871126115322113 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831301 chr21:47831309 synonymous SNV . 0 29 hm5C_associated_SNPs_14500 2 0 1 0 0 Exosome 1 0.500231615099676 0.257747769355774 0.999536769800647 hm5C_site_16248 DeepMRMD:0.257747769355774;iRNA_m5C:0.999536769800647 not specified not specified 16249 chr21 47831473 47831473 1 + A G rs536219610 47831456 + 47831436 47831476 41 CTGGAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGC CTGGAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGGGGC < 41bp 1 0.015334975171865 1 0.157186269760132 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831456 chr21:47831473 nonsynonymous SNV 0.149 1 38 hm5C_associated_SNPs_14501 0 0 1 0 0 Exosome 1 0.500231643893062 1 0.999536712213877 hm5C_site_16249 DeepMRMD:1;iRNA_m5C:0.999536712213877 16250 chr21 47831473 47831473 1 + A G rs536219610 47831457 + 47831437 47831477 41 TGGAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCT TGGAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGGGGCT < 41bp 1 0.331611449460026 1 0.942121922969818 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831457 chr21:47831473 nonsynonymous SNV 0.149 1 37 hm5C_associated_SNPs_14502 0 0 1 0 0 Exosome 1 0.50023163664483 0.115756154060364 0.99953672671034 hm5C_site_16250 DeepMRMD:0.115756154060364;iRNA_m5C:0.99953672671034 16251 chr21 47831473 47831473 1 + A G rs536219610 47831459 + 47831439 47831479 41 GAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGC GAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGGGGCTGC < 41bp 1 0.244450306744087 1 0.556354463100433 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831459 chr21:47831473 nonsynonymous SNV 0.149 1 35 hm5C_associated_SNPs_14503 0 0 1 0 0 Exosome 1 0.500231643921092 0.887291073799134 0.999536712157815 hm5C_site_16251 DeepMRMD:0.887291073799134;iRNA_m5C:0.999536712157815 16252 chr21 47831473 47831473 1 + A G rs536219610 47831460 + 47831440 47831480 41 AGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCG AGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGGGGCTGCG < 41bp 1 0.452416312693512 1 0.846221327781677 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831460 chr21:47831473 nonsynonymous SNV 0.149 1 34 hm5C_associated_SNPs_14504 0 0 1 0 0 Exosome 1 0.500231637234481 0.307557344436646 0.999536725531038 hm5C_site_16252 DeepMRMD:0.307557344436646;iRNA_m5C:0.999536725531038 16253 chr21 47831473 47831473 1 + A G rs536219610 47831465 + 47831445 47831485 41 CTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCGGAGCT CTGCAGCAGCGCCTCCAGGGCGCAGAGGGGGCTGCGGAGCT < 41bp 1 0.293074844606269 1 0.588641166687012 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831465 chr21:47831473 nonsynonymous SNV 0.149 1 29 hm5C_associated_SNPs_14505 0 0 1 0 0 Exosome 1 0.500231643921089 0.822717666625976 0.999536712157821 hm5C_site_16253 DeepMRMD:0.822717666625976;iRNA_m5C:0.999536712157821 16254 chr21 47831480 47831480 1 + G A rs142278771 47831460 + 47831440 47831480 41 AGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCG AGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCA < 41bp 1 0.402162329298038 1 0.911603093147278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831460 chr21:47831480 synonymous SNV . 0 41 hm5C_associated_SNPs_14506 0 0 1 0 0 Exosome 1 0.500231643915368 0.176793813705444 0.999536712169263 hm5C_site_16254 DeepMRMD:0.176793813705444;iRNA_m5C:0.999536712169263 16255 chr21 47831480 47831480 1 + G A rs142278771 47831465 + 47831445 47831485 41 CTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCGGAGCT CTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCAGAGCT < 41bp 1 0.248521590787571 1 0.556297361850739 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831465 chr21:47831480 synonymous SNV . 0 36 hm5C_associated_SNPs_14507 0 0 1 0 0 Exosome 1 0.500231631761238 0.887405276298522 0.999536736477524 hm5C_site_16255 DeepMRMD:0.887405276298522;iRNA_m5C:0.999536736477524 16256 chr21 47836411 47836411 1 + G A rs150756913 47836431 + 47836411 47836451 41 GACCAGCGTACTTGGTGGCTCCCGCCACCAGAGCCACACTG AACCAGCGTACTTGGTGGCTCCCGCCACCAGAGCCACACTG < 41bp 1 0.117486733290052 1 0.44178569316864 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47836431 chr21:47836411 synonymous SNV . 0 1 hm5C_associated_SNPs_14508 2 0 1 0 0 Exosome 1 0.500231643907233 1 0.999536712185534 hm5C_site_16256 DeepMRMD:1;iRNA_m5C:0.999536712185534 not specified not specified 16257 chr21 47836426 47836426 1 + T C rs57108405 47836431 + 47836411 47836451 41 GACCAGCGTACTTGGTGGCTCCCGCCACCAGAGCCACACTG GACCAGCGTACTTGGCGGCTCCCGCCACCAGAGCCACACTG < 41bp 1 0.115740806908236 1 0.469164162874222 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47836431 chr21:47836426 synonymous SNV . 0 16 hm5C_associated_SNPs_14509 2 0 1 0 0 Exosome 1 0.50023164392099 1 0.999536712158021 hm5C_site_16257 DeepMRMD:1;iRNA_m5C:0.999536712158021 not specified not specified 16258 chr21 47836448 47836448 1 + A G rs9981448 47836431 + 47836411 47836451 41 GACCAGCGTACTTGGTGGCTCCCGCCACCAGAGCCACACTG GACCAGCGTACTTGGTGGCTCCCGCCACCAGAGCCACGCTG < 41bp 1 0.126045187023159 1 0.450048208236694 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47836431 chr21:47836448 nonsynonymous SNV 0.000 0 38 hm5C_associated_SNPs_14510 2 0 1 0 0 Exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_16258 DeepMRMD:1;iRNA_m5C:0.999536712157814 not specified not specified 16259 chr21 47841989 47841989 1 + C T rs61735814 47842001 + 47841981 47842021 41 GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGC GTTTCAGCTGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGC < 41bp 1 0.0589906003150226 1 0.404620885848999 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47842001 chr21:47841989 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_14511 2 0 1 0 1 Exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_16259 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 16260 chr21 47842018 47842018 1 + G A rs75024419 47842001 + 47841981 47842021 41 GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGC GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAATGC < 41bp 1 0.054644682748791 1 0.306631803512573 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47842001 chr21:47842018 nonsynonymous SNV 0.006 2 38 hm5C_associated_SNPs_14512 2 0 1 0 1 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16260 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 16261 chr21 47864716 47864716 1 + T C rs111389121 47864706 + 47864686 47864726 41 ATTCACCATTTAGAAGTGATCCAGCAAAGATTGGGAGGGGT ATTCACCATTTAGAAGTGATCCAGCAAAGACTGGGAGGGGT < 41bp 1 0.0590581093542597 1 0.414367079734802 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47864706 chr21:47864716 synonymous SNV . 0 31 hm5C_associated_SNPs_14513 2 0 1 0 1 Exosome 1 0.500233250946817 1 0.999533498106365 hm5C_site_16261 DeepMRMD:1;iRNA_m5C:0.999533498106365 Microcephalic Osteodysplastic Primordial Dwarfism Microcephalic Osteodysplastic Primordial Dwarfism 16262 chr21 47975907 47975907 1 + A G rs573139009 47975902 + 47975882 47975922 41 TCCTGTTTAACAGATGACATCCCAAAAAAGAAGATAGCAAG TCCTGTTTAACAGATGACATCCCAAGAAAGAAGATAGCAAG < 41bp 1 0.219842557769268 1 0.356637597084045 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47975902 chr21:47975907 nonsynonymous SNV 0.988 1 26 hm5C_associated_SNPs_14514 0 0 1 0 2 Cytosol 1 0.500231658162494 1 0.999536683675011 hm5C_site_16262 DeepMRMD:1;iRNA_m5C:0.999536683675011 16263 chr21 47983806 47983806 1 + C G rs201790767 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG CCCGGCGTGAAGGTCATCATCGCACACACGGAGACCAAAGG < 41bp 1 0.307406097951424 1 0.224317967891693 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983806 synonymous SNV . 0 30 hm5C_associated_SNPs_14515 0 0 1 1 2 Cytosol 1 0.500243613547138 1 0.999512772905724 hm5C_site_16263 DeepMRMD:1;iRNA_m5C:0.999512772905724 16264 chr21 48063447 48063447 1 + G A rs148794096 48063444 + 48063424 48063464 41 ACGCTTTCCTTGGCTTTGAGCAGGGAGAAGAGCCTGCTGAG ACGCTTTCCTTGGCTTTGAGCAGAGAGAAGAGCCTGCTGAG < 41bp 1 0.453228826020315 1 0.846452355384827 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48063444 chr21:48063447 nonsynonymous SNV 0.683 0 24 hm5C_associated_SNPs_14516 0 0 1 0 1 Cytosol 1 0.500470523433405 0.307095289230346 0.99905895313319 hm5C_site_16264 DeepMRMD:0.307095289230346;iRNA_m5C:0.99905895313319 16265 chr22 18572581 18572581 1 + C G rs139987168 18572577 + 18572557 18572597 41 TCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTA TCCCGGGTTCATGCCATTCTCCTGGCTCAGCCTCCCGAGTA < 41bp 1 0.680169900540636 1 0.379243016242981 experiment 0.639660198918728 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572577 chr22:18572581 . . 0 25 hm5C_associated_SNPs_14519 1 0 0 0 0 Ribosome 1 0.50023164392524 1 0.999536712149519 hm5C_site_16265 DeepMRMD:1;iRNA_m5C:0.999536712149519 Zellweger syndrome Zellweger syndrome 16266 chr22 18572581 18572581 1 + C G rs139987168 18572582 + 18572562 18572602 41 GGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGG GGTTCATGCCATTCTCCTGGCTCAGCCTCCCGAGTAGCTGG < 41bp 1 0.492328997533555 1 0.133725225925446 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572582 chr22:18572581 . . 0 20 hm5C_associated_SNPs_14521 1 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_16266 DeepMRMD:1;iRNA_m5C:0.999536712157816 Zellweger syndrome Zellweger syndrome 16267 chr22 18572581 18572581 1 + C G rs139987168 18572584 + 18572564 18572604 41 TTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGA TTCATGCCATTCTCCTGGCTCAGCCTCCCGAGTAGCTGGGA < 41bp 1 0.405999521375079 1 0.445130050182343 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572584 chr22:18572581 . . 0 18 hm5C_associated_SNPs_14522 1 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16267 DeepMRMD:1;iRNA_m5C:0.999536712157815 Zellweger syndrome Zellweger syndrome 16268 chr22 18572581 18572581 1 + C G rs139987168 18572587 + 18572567 18572607 41 ATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTA ATGCCATTCTCCTGGCTCAGCCTCCCGAGTAGCTGGGACTA < 41bp 1 0.0830443178732364 1 0.123361855745316 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572587 chr22:18572581 . . 0 15 hm5C_associated_SNPs_14523 1 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16268 DeepMRMD:1;iRNA_m5C:0.999536712157815 Zellweger syndrome Zellweger syndrome 16269 chr22 18572581 18572581 1 + C G rs139987168 18572588 + 18572568 18572608 41 TGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTAC TGCCATTCTCCTGGCTCAGCCTCCCGAGTAGCTGGGACTAC < 41bp 1 0.363446339255934 1 0.315317571163177 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572588 chr22:18572581 . . 0 14 hm5C_associated_SNPs_14524 1 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16269 DeepMRMD:1;iRNA_m5C:0.999536712157815 Zellweger syndrome Zellweger syndrome 16270 chr22 18572581 18572581 1 + C G rs139987168 18572591 + 18572571 18572611 41 CATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGG CATTCTCCTGGCTCAGCCTCCCGAGTAGCTGGGACTACAGG < 41bp 1 0.311731456129864 1 0.621670365333557 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572591 chr22:18572581 . . 0 11 hm5C_associated_SNPs_14526 1 0 0 0 0 Ribosome 1 0.500231643921493 0.756659269332886 0.999536712157014 hm5C_site_16270 DeepMRMD:0.756659269332886;iRNA_m5C:0.999536712157014 Zellweger syndrome Zellweger syndrome 16271 chr22 18572581 18572581 1 + C G rs139987168 18572592 + 18572572 18572612 41 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGT ATTCTCCTGGCTCAGCCTCCCGAGTAGCTGGGACTACAGGT < 41bp 1 0.662924313779634 1 0.588994145393372 experiment 0.674151372440733 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572592 chr22:18572581 . . 0 10 hm5C_associated_SNPs_14527 1 0 0 0 0 Ribosome 1 0.500231643928002 0.822011709213256 0.999536712143995 hm5C_site_16271 DeepMRMD:0.822011709213256;iRNA_m5C:0.999536712143995 Zellweger syndrome Zellweger syndrome 16272 chr22 18572594 18572594 1 + A C rs575596743 18572577 + 18572557 18572597 41 TCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTA TCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGCGTA < 41bp 1 0.423617706680673 1 0.299879550933838 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572577 chr22:18572594 . . 0 38 hm5C_associated_SNPs_14528 0 0 0 0 0 Ribosome 1 0.500231643921077 1 0.999536712157847 hm5C_site_16272 DeepMRMD:1;iRNA_m5C:0.999536712157847 16273 chr22 18572594 18572594 1 + A C rs575596743 18572578 + 18572558 18572598 41 CCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAG CCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGCGTAG < 41bp 1 0.572406855088983 1 0.1967433989048 experiment 0.855186289822035 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572578 chr22:18572594 . . 0 37 hm5C_associated_SNPs_14529 0 0 0 0 0 Ribosome 1 0.500231638317021 1 0.999536723365959 hm5C_site_16273 DeepMRMD:1;iRNA_m5C:0.999536723365959 16274 chr22 18572594 18572594 1 + A C rs575596743 18572581 + 18572561 18572601 41 GGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGCGTAGCTG < 41bp 1 0.298517571360347 1 0.0507785379886627 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572581 chr22:18572594 . . 0 34 hm5C_associated_SNPs_14530 0 0 0 0 0 Ribosome 1 0.50023164391756 1 0.999536712164881 hm5C_site_16274 DeepMRMD:1;iRNA_m5C:0.999536712164881 16275 chr22 18572594 18572594 1 + A C rs575596743 18572582 + 18572562 18572602 41 GGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGG GGTTCATGCCATTCTCCTGCCTCAGCCTCCCGCGTAGCTGG < 41bp 1 0.493895646042185 1 0.283208072185516 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572582 chr22:18572594 . . 0 33 hm5C_associated_SNPs_14531 0 0 0 0 0 Ribosome 1 0.500231643921218 1 0.999536712157565 hm5C_site_16275 DeepMRMD:1;iRNA_m5C:0.999536712157565 16276 chr22 18572594 18572594 1 + A C rs575596743 18572584 + 18572564 18572604 41 TTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGA TTCATGCCATTCTCCTGCCTCAGCCTCCCGCGTAGCTGGGA < 41bp 1 0.379193242523732 1 0.505274713039398 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572584 chr22:18572594 . . 0 31 hm5C_associated_SNPs_14532 0 0 0 0 0 Ribosome 1 0.500231643921092 0.989450573921204 0.999536712157815 hm5C_site_16276 DeepMRMD:0.989450573921204;iRNA_m5C:0.999536712157815 16277 chr22 18572594 18572594 1 + A C rs575596743 18572587 + 18572567 18572607 41 ATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTA ATGCCATTCTCCTGCCTCAGCCTCCCGCGTAGCTGGGACTA < 41bp 1 0.0788922543080621 1 0.262895405292511 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572587 chr22:18572594 . . 0 28 hm5C_associated_SNPs_14533 0 0 0 0 0 Ribosome 1 0.500231644177675 1 0.999536711644651 hm5C_site_16277 DeepMRMD:1;iRNA_m5C:0.999536711644651 16278 chr22 18572594 18572594 1 + A C rs575596743 18572588 + 18572568 18572608 41 TGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTAC TGCCATTCTCCTGCCTCAGCCTCCCGCGTAGCTGGGACTAC < 41bp 1 0.289326842886291 1 0.476407319307327 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572588 chr22:18572594 . . 0 27 hm5C_associated_SNPs_14534 0 0 0 0 0 Ribosome 1 0.50023151471377 1 0.999536970572459 hm5C_site_16278 DeepMRMD:1;iRNA_m5C:0.999536970572459 16279 chr22 18572594 18572594 1 + A C rs575596743 18572590 + 18572570 18572610 41 CCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAG CCATTCTCCTGCCTCAGCCTCCCGCGTAGCTGGGACTACAG < 41bp 1 0.319133765895084 1 0.284068167209625 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572590 chr22:18572594 . . 0 25 hm5C_associated_SNPs_14535 0 0 0 0 0 Ribosome 1 0.500231764606622 1 0.999536470786755 hm5C_site_16279 DeepMRMD:1;iRNA_m5C:0.999536470786755 16280 chr22 18572594 18572594 1 + A C rs575596743 18572591 + 18572571 18572611 41 CATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGG CATTCTCCTGCCTCAGCCTCCCGCGTAGCTGGGACTACAGG < 41bp 1 0.341781652829009 1 0.496806025505066 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572591 chr22:18572594 . . 0 24 hm5C_associated_SNPs_14536 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16280 DeepMRMD:1;iRNA_m5C:0.999536712157815 16281 chr22 18572594 18572594 1 + A C rs575596743 18572592 + 18572572 18572612 41 ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGT ATTCTCCTGCCTCAGCCTCCCGCGTAGCTGGGACTACAGGT < 41bp 1 0.662996499656674 1 0.456370025873184 experiment 0.674007000686652 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572592 chr22:18572594 . . 0 23 hm5C_associated_SNPs_14537 0 0 0 0 0 Ribosome 1 0.500939039128463 1 0.998121921743074 hm5C_site_16281 DeepMRMD:1;iRNA_m5C:0.998121921743074 16282 chr22 18572594 18572594 1 + A C rs575596743 18572605 + 18572585 18572625 41 AGCCTCCCGAGTAGCTGGGACTACAGGTGCCCACCACCTCG AGCCTCCCGCGTAGCTGGGACTACAGGTGCCCACCACCTCG < 41bp 1 0.66534843734266 1 0.493297874927521 experiment 0.66930312531468 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572605 chr22:18572594 . . 0 10 hm5C_associated_SNPs_14538 0 0 0 0 0 Ribosome 1 0.500231643921544 1 0.999536712156911 hm5C_site_16282 DeepMRMD:1;iRNA_m5C:0.999536712156911 16283 chr22 18572594 18572594 1 + A C rs575596743 18572614 + 18572594 18572634 41 AGTAGCTGGGACTACAGGTGCCCACCACCTCGCCTGGCTAA CGTAGCTGGGACTACAGGTGCCCACCACCTCGCCTGGCTAA < 41bp 1 0.176000904966512 1 0.245780020952225 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572614 chr22:18572594 . . 0 1 hm5C_associated_SNPs_14539 0 0 0 0 0 Ribosome 1 0.50023164392633 1 0.999536712147339 hm5C_site_16283 DeepMRMD:1;iRNA_m5C:0.999536712147339 16284 chr22 18572619 18572619 1 + C T rs79447039 18572605 + 18572585 18572625 41 AGCCTCCCGAGTAGCTGGGACTACAGGTGCCCACCACCTCG AGCCTCCCGAGTAGCTGGGACTACAGGTGCCCACTACCTCG < 41bp 1 0.674671196005148 1 0.443448215723038 experiment 0.650657607989704 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572605 chr22:18572619 . . 0 35 hm5C_associated_SNPs_14540 1 0 0 0 0 Ribosome 1 0.5002322810551 1 0.999535437889799 hm5C_site_16284 DeepMRMD:1;iRNA_m5C:0.999535437889799 Zellweger syndrome Zellweger syndrome 16285 chr22 18572619 18572619 1 + C T rs79447039 18572614 + 18572594 18572634 41 AGTAGCTGGGACTACAGGTGCCCACCACCTCGCCTGGCTAA AGTAGCTGGGACTACAGGTGCCCACTACCTCGCCTGGCTAA < 41bp 1 0.223282836897264 1 0.140382885932922 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572614 chr22:18572619 . . 0 26 hm5C_associated_SNPs_14541 1 0 0 0 0 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_16285 DeepMRMD:1;iRNA_m5C:0.999536712157812 Zellweger syndrome Zellweger syndrome 16286 chr22 18572619 18572619 1 + C T rs79447039 18572615 + 18572595 18572635 41 GTAGCTGGGACTACAGGTGCCCACCACCTCGCCTGGCTAAT GTAGCTGGGACTACAGGTGCCCACTACCTCGCCTGGCTAAT < 41bp 1 0.119491949026108 1 0.0504143834114075 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572615 chr22:18572619 . . 0 25 hm5C_associated_SNPs_14542 1 0 0 0 0 Ribosome 1 0.50023152712265 1 0.9995369457547 hm5C_site_16286 DeepMRMD:1;iRNA_m5C:0.9995369457547 Zellweger syndrome Zellweger syndrome 16287 chr22 18572619 18572619 1 + C T rs79447039 18572616 + 18572596 18572636 41 TAGCTGGGACTACAGGTGCCCACCACCTCGCCTGGCTAATA TAGCTGGGACTACAGGTGCCCACTACCTCGCCTGGCTAATA < 41bp 1 0.38286547831384 1 0.111983388662338 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PEX26 ENSG00000215193 UTR3 Human protein_coding chr22:18572616 chr22:18572619 . . 0 24 hm5C_associated_SNPs_14543 1 0 0 0 0 Ribosome 1 0.500231643920908 1 0.999536712158184 hm5C_site_16287 DeepMRMD:1;iRNA_m5C:0.999536712158184 Zellweger syndrome Zellweger syndrome 16288 chr22 18979430 18979430 1 + G A rs534406602 18979435 + 18979415 18979455 41 AGGCCCGTCCTGGTGGAGTTCACCCTGCTGGAGATGGAGAA AGGCCCGTCCTGGTGAAGTTCACCCTGCTGGAGATGGAGAA < 41bp 1 0.241037448111589 1 0.273840039968491 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979435 chr22:18979430 . . 0 16 hm5C_associated_SNPs_14545 0 0 1 1 0 unknown 1 0.500231646992605 1 0.999536706014791 hm5C_site_16288 DeepMRMD:1;iRNA_m5C:0.999536706014791 16289 chr22 18979462 18979462 1 + C A rs577669189 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGCGAACAAAGCCTGTCTGTGTGTTCTGGAAC < 41bp 1 0.140421777230101 1 0.060146152973175 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979462 . . 0 17 hm5C_associated_SNPs_14546 0 0 0 0 1 unknown 1 0.500231643899043 1 0.999536712201913 hm5C_site_16289 DeepMRMD:1;iRNA_m5C:0.999536712201913 16290 chr22 19492948 19492948 1 + C T rs201188510 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAATGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.40572679350793 1 0.120424568653107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492948 synonymous SNV . 0 6 hm5C_associated_SNPs_14547 0 0 1 0 2 Ribosome 1 0.500231644106837 1 0.999536711786325 hm5C_site_16290 DeepMRMD:1;iRNA_m5C:0.999536711786325 16291 chr22 19706000 19706000 1 + G A rs577427065 19705998 + 19705978 19706018 41 CTCTGGCTCGGGTGCGGGAGCGGGGCCTGCCCGGACTGCGA CTCTGGCTCGGGTGCGGGAGCGAGGCCTGCCCGGACTGCGA < 41bp 1 0.682496874239526 1 0.930372714996338 experiment 0.635006251520948 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEPT5-GP1BB ENSG00000184702 UTR5 Human protein_coding chr22:19705998 chr22:19706000 . . 0 23 hm5C_associated_SNPs_14548 0 0 1 0 1 unknown 1 0.500231643860657 0.139254570007324 0.999536712278685 hm5C_site_16291 DeepMRMD:0.139254570007324;iRNA_m5C:0.999536712278685 16292 chr22 19710586 19710586 1 + C T rs75394242 19710572 + 19710552 19710592 41 GCAAGGAGCGGGGTCGTGACCGCTTACACCCCTTCTCCACA GCAAGGAGCGGGGTCGTGACCGCTTACACCCCTTTTCCACA < 41bp 1 0.360889471765306 1 0.246580719947815 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SEPT5-GP1BB ENSG00000203618;ENSG00000184702 UTR5;UTR3 Human other chr22:19710572 chr22:19710586 . . 0 35 hm5C_associated_SNPs_14549 0 0 1 0 0 unknown 1 0.500231681590806 1 0.999536636818387 hm5C_site_16292 DeepMRMD:1;iRNA_m5C:0.999536636818387 16293 chr22 19712064 19712064 1 + G C rs79998786 19712071 + 19712051 19712091 41 CAGGACCCTGCCCGAGGGGCCCTCGCGCCAACCTGGACCGG CAGGACCCTGCCCCAGGGGCCCTCGCGCCAACCTGGACCGG < 41bp 1 0.1037651513766 1 0.184128820896149 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SEPT5-GP1BB ENSG00000184702;ENSG00000203618 UTR3 Human other chr22:19712071 chr22:19712064 . . 0 14 hm5C_associated_SNPs_14550 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16293 DeepMRMD:1;iRNA_m5C:0.999536712157815 16294 chr22 19929310 19929310 1 + A C rs571085983 19929327 + 19929307 19929347 41 GCCACCGCCATTGCCGCCATCGTCGTGGGGCTTCTGGGGCA GCCCCCGCCATTGCCGCCATCGTCGTGGGGCTTCTGGGGCA < 41bp 1 0.638690415954597 1 0.670981585979462 experiment 0.722619168090806 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TXNRD2 ENSG00000184470 CDS Human protein_coding chr22:19929327 chr22:19929310 nonsynonymous SNV 0.874 0 4 hm5C_associated_SNPs_14551 0 0 1 0 0 Cytosol 1 0.500231643921093 0.658036828041076 0.999536712157814 hm5C_site_16294 DeepMRMD:0.658036828041076;iRNA_m5C:0.999536712157814 16295 chr22 19939082 19939082 1 + C T rs140215652 19939081 + 19939061 19939101 41 CGCTGTGTACACTGTGTGCTCCGGTTGTTGCATCCGAGGGT CGCTGTGTACACTGTGTGCTCTGGTTGTTGCATCCGAGGGT < 41bp 1 0.4354026011675 1 0.532157421112061 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control COMT ENSG00000093010 UTR5 Human protein_coding chr22:19939081 chr22:19939082 . . 0 22 hm5C_associated_SNPs_14552 0 0 1 0 1 Ribosome 1 0.500233426829442 0.935685157775878 0.999533146341116 hm5C_site_16295 DeepMRMD:0.935685157775878;iRNA_m5C:0.999533146341116 16296 chr22 19939083 19939083 1 + G A rs191619546 19939081 + 19939061 19939101 41 CGCTGTGTACACTGTGTGCTCCGGTTGTTGCATCCGAGGGT CGCTGTGTACACTGTGTGCTCCAGTTGTTGCATCCGAGGGT < 41bp 1 0.160623980200484 1 0.566509604454041 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control COMT ENSG00000093010 UTR5 Human protein_coding chr22:19939081 chr22:19939083 . . 0 23 hm5C_associated_SNPs_14553 0 0 1 0 1 Ribosome 1 0.500233426361959 0.866980791091918 0.999533147276081 hm5C_site_16296 DeepMRMD:0.866980791091918;iRNA_m5C:0.999533147276081 16297 chr22 19939096 19939096 1 + G A rs739368 19939081 + 19939061 19939101 41 CGCTGTGTACACTGTGTGCTCCGGTTGTTGCATCCGAGGGT CGCTGTGTACACTGTGTGCTCCGGTTGTTGCATCCAAGGGT < 41bp 1 0.232160190416575 1 0.738495051860809 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control COMT ENSG00000093010 UTR5 Human protein_coding chr22:19939081 chr22:19939096 . . 0 36 hm5C_associated_SNPs_14554 0 0 1 0 1 Ribosome 1 0.50023437682471 0.523009896278382 0.999531246350579 hm5C_site_16297 DeepMRMD:0.523009896278382;iRNA_m5C:0.999531246350579 16298 chr22 19950040 19950040 1 + C T rs199755426 19950043 + 19950023 19950063 41 TGGCGCCCCTCCCCTCCCGCCCTGCAGATGCCGGAGGCCCC TGGCGCCCCTCCCCTCCTGCCCTGCAGATGCCGGAGGCCCC < 41bp 1 0.0350200993665402 1 0.269338488578796 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COMT ENSG00000093010 UTR5 Human protein_coding chr22:19950043 chr22:19950040 . . 0 18 hm5C_associated_SNPs_14555 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16298 DeepMRMD:1;iRNA_m5C:0.999536712157815 16299 chr22 20052327 20052327 1 + C T rs544274351 20052334 + 20052314 20052354 41 GCCCTGTGGTTTGCGTGTTACCCATCTGTGTCCCCATGCCC GCCCTGTGGTTTGTGTGTTACCCATCTGTGTCCCCATGCCC < 41bp 1 0.103657858330313 1 0.0290983319282532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TANGO2 ENSG00000268292 ncRNA_exonic Human antisense chr22:20052334 chr22:20052327 . . 0 14 hm5C_associated_SNPs_14556 0 0 1 1 0 Nucleus 1 0.500231643921103 1 0.999536712157795 hm5C_site_16299 DeepMRMD:1;iRNA_m5C:0.999536712157795 16300 chr22 20097827 20097827 1 + G A rs181232565 20097831 + 20097811 20097851 41 ACACATGTGGAGCAGCGGCTCTCCCTGGAAAGCTCCAGGCC ACACATGTGGAGCAGCAGCTCTCCCTGGAAAGCTCCAGGCC < 41bp 1 0.621765020904753 1 0.626917719841003 experiment 0.756469958190495 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DGCR8 ENSG00000128191 UTR3 Human protein_coding chr22:20097831 chr22:20097827 . . 0 17 hm5C_associated_SNPs_14557 0 0 1 0 0 Nucleus 1 0.500231643917814 0.746164560317994 0.999536712164371 hm5C_site_16300 DeepMRMD:0.746164560317994;iRNA_m5C:0.999536712164371 16301 chr22 20748544 20748544 1 + C T rs140074587 20748525 + 20748505 20748545 41 TTGCCGGTCCCTCAGACCGTCGGCGGTCTCTGTCCGCTTCG TTGCCGGTCCCTCAGACCGTCGGCGGTCTCTGTCCGCTTTG < 41bp 1 0.653087827110815 1 0.41402542591095 experiment 0.69382434577837 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF74 ENSG00000185252 UTR5 Human protein_coding chr22:20748525 chr22:20748544 . . 0 40 hm5C_associated_SNPs_14558 0 0 1 0 1 Cytosol 1 0.500231643920334 1 0.999536712159333 hm5C_site_16301 DeepMRMD:1;iRNA_m5C:0.999536712159333 16302 chr22 21305049 21305049 1 + G A rs57573660 21305056 + 21305036 21305076 41 GTTGGGTTTTTATGATAGTGCAAGGAATGACTCATGCCTCT GTTGGGTTTTTATAATAGTGCAAGGAATGACTCATGCCTCT < 41bp 1 0.681825444379902 1 0.268046230077744 experiment 0.636349111240196 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRKL ENSG00000099942 UTR3 Human protein_coding chr22:21305056 chr22:21305049 . . 0 14 hm5C_associated_SNPs_14560 0 0 1 1 0 Nucleus 1 0.500231643897676 1 0.999536712204647 hm5C_site_16302 DeepMRMD:1;iRNA_m5C:0.999536712204647 16303 chr22 21305834 21305834 1 + C A rs561400042 21305824 + 21305804 21305844 41 TGCAATTCAGTCTGCTCTCCCTTGTGGACCCTGGTAAAGAA TGCAATTCAGTCTGCTCTCCCTTGTGGACCATGGTAAAGAA < 41bp 1 0.388879536770574 1 0.0727082490921021 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRKL ENSG00000099942 UTR3 Human protein_coding chr22:21305824 chr22:21305834 . . 0 31 hm5C_associated_SNPs_14561 0 0 1 0 0 Nucleus 1 0.500231643921445 1 0.99953671215711 hm5C_site_16303 DeepMRMD:1;iRNA_m5C:0.99953671215711 16304 chr22 21306194 21306194 1 + C T rs189274432 21306193 + 21306173 21306213 41 CTTGCCAGTGAGAACGGTGACCGCCTCCTGCTCTGCACGGT CTTGCCAGTGAGAACGGTGACTGCCTCCTGCTCTGCACGGT < 41bp 1 0.56820166000014 1 0.0631892383098602 experiment 0.863596679999721 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRKL ENSG00000099942 UTR3 Human protein_coding chr22:21306193 chr22:21306194 . . 0 22 hm5C_associated_SNPs_14562 0 0 1 0 0 Nucleus 1 0.500231642696217 1 0.999536714607566 hm5C_site_16304 DeepMRMD:1;iRNA_m5C:0.999536714607566 16305 chr22 21801280 21801280 1 + G A rs41282577 21801265 + 21801245 21801285 41 ACCTCCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGGGGC ACCTCCCCATCCCACCCAGGCCCCCAGCTCCCCGCAGGGGC < 41bp 1 0.0692711487220487 1 0.0673350095748901 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIC2 ENSG00000169635 UTR3 Human protein_coding chr22:21801265 chr22:21801280 . . 0 36 hm5C_associated_SNPs_14563 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16305 DeepMRMD:1;iRNA_m5C:0.999536712157815 16306 chr22 21801280 21801280 1 + G A rs41282577 21801266 + 21801246 21801286 41 CCTCCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGGGGCC CCTCCCCATCCCACCCAGGCCCCCAGCTCCCCGCAGGGGCC < 41bp 1 0.315433051931277 1 0.310513079166412 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control HIC2 ENSG00000169635 UTR3 Human protein_coding chr22:21801266 chr22:21801280 . . 0 35 hm5C_associated_SNPs_14564 0 0 1 0 0 chromatin 1 0.50023164388605 1 0.9995367122279 hm5C_site_16306 DeepMRMD:1;iRNA_m5C:0.9995367122279 16307 chr22 21801280 21801280 1 + G A rs41282577 21801267 + 21801247 21801287 41 CTCCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGGGGCCA CTCCCCATCCCACCCAGGCCCCCAGCTCCCCGCAGGGGCCA < 41bp 1 0.219616882445572 1 0.0483757257461548 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIC2 ENSG00000169635 UTR3 Human protein_coding chr22:21801267 chr22:21801280 . . 0 34 hm5C_associated_SNPs_14565 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16307 DeepMRMD:1;iRNA_m5C:0.999536712157815 16308 chr22 21801280 21801280 1 + G A rs41282577 21801268 + 21801248 21801288 41 TCCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGGGGCCAC TCCCCATCCCACCCAGGCCCCCAGCTCCCCGCAGGGGCCAC < 41bp 1 0.225223298839852 1 0.162787199020386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIC2 ENSG00000169635 UTR3 Human protein_coding chr22:21801268 chr22:21801280 . . 0 33 hm5C_associated_SNPs_14566 0 0 1 0 0 chromatin 1 0.500231643901722 1 0.999536712196556 hm5C_site_16308 DeepMRMD:1;iRNA_m5C:0.999536712196556 16309 chr22 21801280 21801280 1 + G A rs41282577 21801269 + 21801249 21801289 41 CCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGGGGCCACC CCCCATCCCACCCAGGCCCCCAGCTCCCCGCAGGGGCCACC < 41bp 1 0.40354303347359 1 0.164631754159927 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIC2 ENSG00000169635 UTR3 Human protein_coding chr22:21801269 chr22:21801280 . . 0 32 hm5C_associated_SNPs_14567 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_16309 DeepMRMD:1;iRNA_m5C:0.999536712157815 16310 chr22 21801280 21801280 1 + G A rs41282577 21801285 + 21801265 21801305 41 CCCCCAGCTCCCCGCGGGGGCCACCGCAGGGCCTGTGGGCT CCCCCAGCTCCCCGCAGGGGCCACCGCAGGGCCTGTGGGCT < 41bp 1 0.111087655861283 1 0.168936431407928 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control HIC2 ENSG00000169635 UTR3 Human protein_coding chr22:21801285 chr22:21801280 . . 0 16 hm5C_associated_SNPs_14568 0 0 1 0 0 chromatin 1 0.500231643910994 1 0.999536712178013 hm5C_site_16310 DeepMRMD:1;iRNA_m5C:0.999536712178013 16311 chr22 21801282 21801282 1 + G C rs539310648 21801265 + 21801245 21801285 41 ACCTCCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGGGGC ACCTCCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGCGGC < 41bp 1 0.0796602191139088 1 0.0515942871570587 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIC2 ENSG00000169635 UTR3 Human protein_coding chr22:21801265 chr22:21801282 . . 0 38 hm5C_associated_SNPs_14570 0 0 1 0 0 chromatin 1 0.500231643921086 1 0.999536712157829 hm5C_site_16311 DeepMRMD:1;iRNA_m5C:0.999536712157829 16312 chr22 21801282 21801282 1 + G C rs539310648 21801266 + 21801246 21801286 41 CCTCCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGGGGCC CCTCCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGCGGCC < 41bp 1 0.332881882126071 1 0.174740314483643 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control HIC2 ENSG00000169635 UTR3 Human protein_coding chr22:21801266 chr22:21801282 . . 0 37 hm5C_associated_SNPs_14571 0 0 1 0 0 chromatin 1 0.500231643918759 1 0.999536712162481 hm5C_site_16312 DeepMRMD:1;iRNA_m5C:0.999536712162481 16313 chr22 21801282 21801282 1 + G C rs539310648 21801267 + 21801247 21801287 41 CTCCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGGGGCCA CTCCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGCGGCCA < 41bp 1 0.255189822962536 1 0.0557292401790619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIC2 ENSG00000169635 UTR3 Human protein_coding chr22:21801267 chr22:21801282 . . 0 36 hm5C_associated_SNPs_14572 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16313 DeepMRMD:1;iRNA_m5C:0.999536712157815 16314 chr22 21801282 21801282 1 + G C rs539310648 21801268 + 21801248 21801288 41 TCCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGGGGCCAC TCCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGCGGCCAC < 41bp 1 0.241992500685919 1 0.256282925605774 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIC2 ENSG00000169635 UTR3 Human protein_coding chr22:21801268 chr22:21801282 . . 0 35 hm5C_associated_SNPs_14573 0 0 1 0 0 chromatin 1 0.500231529852134 1 0.999536940295731 hm5C_site_16314 DeepMRMD:1;iRNA_m5C:0.999536940295731 16315 chr22 21801282 21801282 1 + G C rs539310648 21801269 + 21801249 21801289 41 CCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGGGGCCACC CCCCATCCCACCCAGGCCCCCAGCTCCCCGCGGCGGCCACC < 41bp 1 0.436502744089409 1 0.224974721670151 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIC2 ENSG00000169635 UTR3 Human protein_coding chr22:21801269 chr22:21801282 . . 0 34 hm5C_associated_SNPs_14574 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16315 DeepMRMD:1;iRNA_m5C:0.999536712157815 16316 chr22 21801282 21801282 1 + G C rs539310648 21801285 + 21801265 21801305 41 CCCCCAGCTCCCCGCGGGGGCCACCGCAGGGCCTGTGGGCT CCCCCAGCTCCCCGCGGCGGCCACCGCAGGGCCTGTGGGCT < 41bp 1 0.116454168457471 1 0.358016133308411 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control HIC2 ENSG00000169635 UTR3 Human protein_coding chr22:21801285 chr22:21801282 . . 0 18 hm5C_associated_SNPs_14575 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157817 hm5C_site_16316 DeepMRMD:1;iRNA_m5C:0.999536712157817 16317 chr22 21996615 21996615 1 + G A rs375468896 21996599 + 21996579 21996619 41 GACGGAAGCGGCCCCTGGGCCCGAGGGGCTGGAGCCGGGCC GACGGAAGCGGCCCCTGGGCCCGAGGGGCTGGAGCCAGGCC < 41bp 1 0.698901199946965 1 0.626991152763367 experiment 0.602197600106069 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SDF2L1 ENSG00000128228 UTR5 Human protein_coding chr22:21996599 chr22:21996615 . . 0 37 hm5C_associated_SNPs_14577 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644720991 0.746017694473266 0.999536710558018 hm5C_site_16317 DeepMRMD:0.746017694473266;iRNA_m5C:0.999536710558018 16318 chr22 22025325 22025325 1 + C T rs149000654 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCTACCCAGTCTGCACTCCTGATGGCATCGT < 41bp 1 0.50012394525425 1 0.511126458644867 experiment 0.999752109491499 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025325 synonymous SNV . 0 30 hm5C_associated_SNPs_14578 0 0 1 0 2 Cytosol 1 0.500231644052882 0.977747082710266 0.999536711894235 hm5C_site_16318 DeepMRMD:0.977747082710266;iRNA_m5C:0.999536711894235 16319 chr22 22040816 22040816 1 + C T rs201566623 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCACTGCGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.262480537743225 1 0.320139706134796 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040816 synonymous SNV . 0 12 hm5C_associated_SNPs_14579 0 0 1 0 2 Cytosol 1 0.500231631459232 1 0.999536737081536 hm5C_site_16319 DeepMRMD:1;iRNA_m5C:0.999536737081536 16320 chr22 22050304 22050304 1 + T A rs190466719 22050296 + 22050276 22050316 41 GTATATGTCTGGTTTTCTTACCCCTACTTCTGTCATCTTCT GTATATGTCTGGTTTTCTTACCCCTACTACTGTCATCTTCT < 41bp 1 0.08351372233864 1 0.181136906147003 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPIL2 ENSG00000100023 UTR3 Human protein_coding chr22:22050296 chr22:22050304 . . 0 29 hm5C_associated_SNPs_14580 0 0 1 2 0 Cytosol 1 0.500231643921161 1 0.999536712157678 hm5C_site_16320 DeepMRMD:1;iRNA_m5C:0.999536712157678 16321 chr22 22676110 22676110 1 + A G rs6001798 22676109 + 22676089 22676129 41 AACCCTCTGAGAATGTGCCCCAGCCATCCTGGAGGGAAGAG AACCCTCTGAGAATGTGCCCCGGCCATCCTGGAGGGAAGAG < 41bp 1 0.106689400760452 1 0.166229039430618 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BMS1P20 ENSG00000236850 ncRNA_exonic Human other chr22:22676109 chr22:22676110 . . 0 22 hm5C_associated_SNPs_14581 0 0 0 0 0 unknown 1 0.500231644041168 1 0.999536711917665 hm5C_site_16321 DeepMRMD:1;iRNA_m5C:0.999536711917665 16322 chr22 23523644 23523644 1 + G A rs148370562 23523630 + 23523610 23523650 41 AGGTCCAACTTCGAGCGGATCCGCAAGGGCCATGGCCAGCC AGGTCCAACTTCGAGCGGATCCGCAAGGGCCATGACCAGCC < 41bp 1 0.540444517623605 1 0.0527338087558746 experiment 0.919110964752789 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23523630 chr22:23523644 nonsynonymous SNV 0.262 1 35 hm5C_associated_SNPs_14582 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16322 DeepMRMD:1;iRNA_m5C:0.999536712157815 16323 chr22 23596134 23596134 1 + G A rs139201536 23596125 + 23596105 23596145 41 AGCAGCAAGGGCAGGGGCAGCCGGGATGCGCTGGTCTCGGG AGCAGCAAGGGCAGGGGCAGCCGGGATGCACTGGTCTCGGG < 41bp 1 0.640437706768225 1 0.744072139263153 experiment 0.71912458646355 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23596125 chr22:23596134 synonymous SNV . 0 30 hm5C_associated_SNPs_14583 0 0 1 0 1 Ribosome 1 0.500231643875882 0.511855721473694 0.999536712248236 hm5C_site_16323 DeepMRMD:0.511855721473694;iRNA_m5C:0.999536712248236 16324 chr22 23656249 23656249 1 + C T rs544916353 23656252 + 23656232 23656272 41 TTCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTC TTCCTTTTCCTTCTGGATCACCTGAAAAGGTAGCCCAGCTC < 41bp 1 0.189682452096358 1 0.519204676151276 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656252 chr22:23656249 synonymous SNV . 0 18 hm5C_associated_SNPs_14584 0 0 1 0 2 Ribosome 1 0.500231643921092 0.961590647697448 0.999536712157815 hm5C_site_16324 DeepMRMD:0.961590647697448;iRNA_m5C:0.999536712157815 16325 chr22 23656249 23656249 1 + C T rs544916353 23656253 + 23656233 23656273 41 TCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT TCCTTTTCCTTCTGGATCACCTGAAAAGGTAGCCCAGCTCT < 41bp 1 0.445942726177877 1 0.427864342927933 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656253 chr22:23656249 synonymous SNV . 0 17 hm5C_associated_SNPs_14585 0 0 1 0 2 Ribosome 1 0.500231643925187 1 0.999536712149625 hm5C_site_16325 DeepMRMD:1;iRNA_m5C:0.999536712149625 16326 chr22 24106506 24106506 1 + G A rs143257161 24106499 + 24106479 24106519 41 CTAGTGAGCCTGGAGGAGGACCTGAAGGAAGGGGCTTCCCG CTAGTGAGCCTGGAGGAGGACCTGAAGAAAGGGGCTTCCCG < 41bp 1 0.412087891707691 1 0.0629083812236786 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24106499 chr22:24106506 nonsynonymous SNV 0.034 3 28 hm5C_associated_SNPs_14586 0 0 0 0 3 chromatin 1 0.500231643961737 1 0.999536712076525 hm5C_site_16326 DeepMRMD:1;iRNA_m5C:0.999536712076525 16327 chr22 24224655 24224655 1 + G A rs9608213 24224648 + 24224628 24224668 41 CCCTCCTCCCTGGCTCAGCACTACGGCGGCTCCGGGGCTCC CCCTCCTCCCTGGCTCAGCACTACGGCAGCTCCGGGGCTCC < 41bp 1 0.589850901559092 1 0.25772613286972 experiment 0.820298196881816 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24224648 chr22:24224655 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_14587 0 0 1 0 1 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_16327 DeepMRMD:1;iRNA_m5C:0.999536712157815 16328 chr22 24224659 24224659 1 + C A rs9612499 24224648 + 24224628 24224668 41 CCCTCCTCCCTGGCTCAGCACTACGGCGGCTCCGGGGCTCC CCCTCCTCCCTGGCTCAGCACTACGGCGGCTACGGGGCTCC < 41bp 1 0.613669904315448 1 0.179704993963242 experiment 0.772660191369103 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24224648 chr22:24224659 synonymous SNV . 0 32 hm5C_associated_SNPs_14588 0 0 1 0 1 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_16328 DeepMRMD:1;iRNA_m5C:0.999536712157815 16329 chr22 24224668 24224668 1 + C T rs368660150 24224648 + 24224628 24224668 41 CCCTCCTCCCTGGCTCAGCACTACGGCGGCTCCGGGGCTCC CCCTCCTCCCTGGCTCAGCACTACGGCGGCTCCGGGGCTCT < 41bp 1 0.567295991127801 1 0.289566934108734 experiment 0.865408017744398 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24224648 chr22:24224668 synonymous SNV . 0 41 hm5C_associated_SNPs_14589 0 0 1 0 1 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_16329 DeepMRMD:1;iRNA_m5C:0.999536712157815 16330 chr22 24226520 24226520 1 + G A rs36026871 24226534 + 24226514 24226554 41 AGAGCTGTTTGACCAGATGGCCAGGCCTGCTGCCTGCATGG AGAGCTATTTGACCAGATGGCCAGGCCTGCTGCCTGCATGG < 41bp 1 0.430472455576942 1 0.305373936891556 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24226534 chr22:24226520 synonymous SNV . 0 7 hm5C_associated_SNPs_14590 0 0 1 0 2 nucleoplasm 1 0.500231643921081 1 0.999536712157838 hm5C_site_16330 DeepMRMD:1;iRNA_m5C:0.999536712157838 16331 chr22 24237108 24237108 1 + G A rs201099096 24237096 + 24237076 24237116 41 TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAGCGCCTGCG TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAACGCCTGCG < 41bp 1 0.129238392743023 1 0.112756580114365 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237096 chr22:24237108 nonsynonymous SNV 0.973 0 33 hm5C_associated_SNPs_14591 0 0 1 0 1 Ribosome 1 0.500231655495285 1 0.99953668900943 hm5C_site_16331 DeepMRMD:1;iRNA_m5C:0.99953668900943 16332 chr22 24237108 24237108 1 + G A rs201099096 24237109 + 24237089 24237129 41 TGTGCGGCCTGCTGGCCGAGCGCCTGCGCATCAGCCCGGAC TGTGCGGCCTGCTGGCCGAACGCCTGCGCATCAGCCCGGAC < 41bp 1 0.638250015727583 1 0.264285147190094 experiment 0.723499968544835 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237109 chr22:24237108 nonsynonymous SNV 0.973 0 20 hm5C_associated_SNPs_14592 0 0 1 0 1 Ribosome 1 0.500231666549044 1 0.999536666901913 hm5C_site_16332 DeepMRMD:1;iRNA_m5C:0.999536666901913 16333 chr22 24237108 24237108 1 + G A rs201099096 24237117 + 24237097 24237137 41 CTGCTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGC CTGCTGGCCGAACGCCTGCGCATCAGCCCGGACAGGTACGC < 41bp 1 0.533758061951313 1 0.121350705623627 experiment 0.932483876097373 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237117 chr22:24237108 nonsynonymous SNV 0.973 0 12 hm5C_associated_SNPs_14593 0 0 1 0 1 Ribosome 1 0.500231641534513 1 0.999536716930973 hm5C_site_16333 DeepMRMD:1;iRNA_m5C:0.999536716930973 16334 chr22 24237108 24237108 1 + G A rs201099096 24237120 + 24237100 24237140 41 CTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGCGGA CTGGCCGAACGCCTGCGCATCAGCCCGGACAGGTACGCGGA < 41bp 1 0.50926173819814 1 0.34735170006752 experiment 0.98147652360372 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237120 chr22:24237108 nonsynonymous SNV 0.973 0 9 hm5C_associated_SNPs_14594 0 0 1 0 1 Ribosome 1 0.500231645014034 1 0.999536709971931 hm5C_site_16334 DeepMRMD:1;iRNA_m5C:0.999536709971931 16335 chr22 24237112 24237112 1 + C T rs34733430 24237096 + 24237076 24237116 41 TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAGCGCCTGCG TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAGCGCTTGCG < 41bp 1 0.112299141715016 1 0.0952074825763702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237096 chr22:24237112 synonymous SNV . 0 37 hm5C_associated_SNPs_14595 0 0 1 0 1 Ribosome 1 0.500231648269165 1 0.999536703461671 hm5C_site_16335 DeepMRMD:1;iRNA_m5C:0.999536703461671 16336 chr22 24237112 24237112 1 + C T rs34733430 24237109 + 24237089 24237129 41 TGTGCGGCCTGCTGGCCGAGCGCCTGCGCATCAGCCCGGAC TGTGCGGCCTGCTGGCCGAGCGCTTGCGCATCAGCCCGGAC < 41bp 1 0.394429777111567 1 0.072258323431015 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237109 chr22:24237112 synonymous SNV . 0 24 hm5C_associated_SNPs_14596 0 0 1 0 1 Ribosome 1 0.50028207002953 1 0.999435859940939 hm5C_site_16336 DeepMRMD:1;iRNA_m5C:0.999435859940939 16337 chr22 24237112 24237112 1 + C T rs34733430 24237117 + 24237097 24237137 41 CTGCTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGC CTGCTGGCCGAGCGCTTGCGCATCAGCCCGGACAGGTACGC < 41bp 1 0.615103551641546 1 0.255634903907776 experiment 0.769792896716908 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237117 chr22:24237112 synonymous SNV . 0 16 hm5C_associated_SNPs_14597 0 0 1 0 1 Ribosome 1 0.500231644191163 1 0.999536711617675 hm5C_site_16337 DeepMRMD:1;iRNA_m5C:0.999536711617675 16338 chr22 24237112 24237112 1 + C T rs34733430 24237120 + 24237100 24237140 41 CTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGCGGA CTGGCCGAGCGCTTGCGCATCAGCCCGGACAGGTACGCGGA < 41bp 1 0.560770782883328 1 0.28345662355423 experiment 0.878458434233344 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237120 chr22:24237112 synonymous SNV . 0 13 hm5C_associated_SNPs_14598 0 0 1 0 1 Ribosome 1 0.500231643975528 1 0.999536712048943 hm5C_site_16338 DeepMRMD:1;iRNA_m5C:0.999536712048943 16339 chr22 24313954 24313954 1 + A G rs79213832 24313965 + 24313945 24313985 41 CTCATCCCAATAATGATTTTCCCCAACCCCCAGCAGGGCAG CTCATCCCAGTAATGATTTTCCCCAACCCCCAGCAGGGCAG < 41bp 1 0.639258148131165 1 0.306977093219757 experiment 0.721483703737671 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DDTL ENSG00000099974 UTR3 Human protein_coding chr22:24313965 chr22:24313954 . . 0 10 hm5C_associated_SNPs_14599 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16339 DeepMRMD:1;iRNA_m5C:0.999536712157815 16340 chr22 24313954 24313954 1 + A G rs79213832 24313966 + 24313946 24313986 41 TCATCCCAATAATGATTTTCCCCAACCCCCAGCAGGGCAGT TCATCCCAGTAATGATTTTCCCCAACCCCCAGCAGGGCAGT < 41bp 1 0.624023288426918 1 0.178013026714325 experiment 0.751953423146164 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DDTL ENSG00000099974 UTR3 Human protein_coding chr22:24313966 chr22:24313954 . . 0 9 hm5C_associated_SNPs_14600 0 0 0 0 0 Ribosome 1 0.500231643716609 1 0.999536712566782 hm5C_site_16340 DeepMRMD:1;iRNA_m5C:0.999536712566782 16341 chr22 24313954 24313954 1 + A G rs79213832 24313967 + 24313947 24313987 41 CATCCCAATAATGATTTTCCCCAACCCCCAGCAGGGCAGTG CATCCCAGTAATGATTTTCCCCAACCCCCAGCAGGGCAGTG < 41bp 1 0.183120659076365 1 0.0882101953029633 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DDTL ENSG00000099974 UTR3 Human protein_coding chr22:24313967 chr22:24313954 . . 0 8 hm5C_associated_SNPs_14601 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16341 DeepMRMD:1;iRNA_m5C:0.999536712157815 16342 chr22 24313954 24313954 1 + A G rs79213832 24313968 + 24313948 24313988 41 ATCCCAATAATGATTTTCCCCAACCCCCAGCAGGGCAGTGG ATCCCAGTAATGATTTTCCCCAACCCCCAGCAGGGCAGTGG < 41bp 1 0.33505018730206 1 0.0920661687850952 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DDTL ENSG00000099974 UTR3 Human protein_coding chr22:24313968 chr22:24313954 . . 0 7 hm5C_associated_SNPs_14602 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16342 DeepMRMD:1;iRNA_m5C:0.999536712157815 16343 chr22 24313954 24313954 1 + A G rs79213832 24313971 + 24313951 24313991 41 CCAATAATGATTTTCCCCAACCCCCAGCAGGGCAGTGGGAC CCAGTAATGATTTTCCCCAACCCCCAGCAGGGCAGTGGGAC < 41bp 1 0.174377257033673 1 0.243509441614151 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DDTL ENSG00000099974 UTR3 Human protein_coding chr22:24313971 chr22:24313954 . . 0 4 hm5C_associated_SNPs_14603 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16343 DeepMRMD:1;iRNA_m5C:0.999536712157815 16344 chr22 24313954 24313954 1 + A G rs79213832 24313972 + 24313952 24313992 41 CAATAATGATTTTCCCCAACCCCCAGCAGGGCAGTGGGACA CAGTAATGATTTTCCCCAACCCCCAGCAGGGCAGTGGGACA < 41bp 1 0.58068844802568 1 0.51852822303772 experiment 0.83862310394864 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DDTL ENSG00000099974 UTR3 Human protein_coding chr22:24313972 chr22:24313954 . . 0 3 hm5C_associated_SNPs_14604 0 0 0 0 0 Ribosome 1 0.500231643921087 0.96294355392456 0.999536712157825 hm5C_site_16344 DeepMRMD:0.96294355392456;iRNA_m5C:0.999536712157825 16345 chr22 24313954 24313954 1 + A G rs79213832 24313973 + 24313953 24313993 41 AATAATGATTTTCCCCAACCCCCAGCAGGGCAGTGGGACAC AGTAATGATTTTCCCCAACCCCCAGCAGGGCAGTGGGACAC < 41bp 1 0.519858636842417 1 0.13194665312767 experiment 0.960282726315166 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DDTL ENSG00000099974 UTR3 Human protein_coding chr22:24313973 chr22:24313954 . . 0 2 hm5C_associated_SNPs_14605 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16345 DeepMRMD:1;iRNA_m5C:0.999536712157815 16346 chr22 24313954 24313954 1 + A G rs79213832 24313974 + 24313954 24313994 41 ATAATGATTTTCCCCAACCCCCAGCAGGGCAGTGGGACACT GTAATGATTTTCCCCAACCCCCAGCAGGGCAGTGGGACACT < 41bp 1 0.375909477540213 1 0.318282306194305 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DDTL ENSG00000099974 UTR3 Human protein_coding chr22:24313974 chr22:24313954 . . 0 1 hm5C_associated_SNPs_14606 0 0 0 0 0 Ribosome 1 0.500231643921089 1 0.999536712157822 hm5C_site_16346 DeepMRMD:1;iRNA_m5C:0.999536712157822 16347 chr22 24325095 24325095 1 + A C rs140195 24325093 + 24325073 24325113 41 ACTCATTGGGGTCCAGGTGCCCAAGGAGAAGGTGGAACGCA ACTCATTGGGGTCCAGGTGCCCCAGGAGAAGGTGGAACGCA < 41bp 1 0.483762391499157 1 0.129829615354538 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTT2;GSTT2B ENSG00000099984 CDS Human polymorphic_pseudogene chr22:24325093 chr22:24325095 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_14607 0 0 0 0 2 unknown 1 0.500231641945689 1 0.999536716108621 hm5C_site_16347 DeepMRMD:1;iRNA_m5C:0.999536716108621 16348 chr22 24325095 24325095 1 + A C rs140195 24325094 + 24325074 24325114 41 CTCATTGGGGTCCAGGTGCCCAAGGAGAAGGTGGAACGCAA CTCATTGGGGTCCAGGTGCCCCAGGAGAAGGTGGAACGCAA < 41bp 1 0.548675578379248 1 0.709616899490356 experiment 0.902648843241504 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GSTT2;GSTT2B ENSG00000099984 CDS Human polymorphic_pseudogene chr22:24325094 chr22:24325095 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_14608 0 0 0 0 2 unknown 1 0.500231643921089 0.580766201019288 0.999536712157822 hm5C_site_16348 DeepMRMD:0.580766201019288;iRNA_m5C:0.999536712157822 16349 chr22 24468448 24468448 1 + C T rs142541555 24468439 + 24468419 24468459 41 CTCTGTGCCACCAGCAGCAGCTCCAAAACCCAGCGGAGGAA CTCTGTGCCACCAGCAGCAGCTCCAAAACTCAGCGGAGGAA < 41bp 1 0.35668123214321 1 0.862331748008728 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24468439 chr22:24468448 nonsynonymous SNV 0.996 0 30 hm5C_associated_SNPs_14609 0 0 1 0 1 Cytosol 1 0.500231633150412 0.275336503982544 0.999536733699177 hm5C_site_16349 DeepMRMD:0.275336503982544;iRNA_m5C:0.999536733699177 16350 chr22 24584744 24584744 1 + C T rs148053656 24584732 + 24584712 24584752 41 CAGATTCCAATAGCTCACTCCCTAGAGCCTGACGCCGGGGC CAGATTCCAATAGCTCACTCCCTAGAGCCTGATGCCGGGGC < 41bp 1 0.0949758512292706 1 0.56904923915863 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SUSD2 ENSG00000099994 UTR3 Human protein_coding chr22:24584732 chr22:24584744 . . 0 33 hm5C_associated_SNPs_14610 0 0 1 0 0 Exosome 1 0.50023162492118 0.86190152168274 0.999536750157639 hm5C_site_16350 DeepMRMD:0.86190152168274;iRNA_m5C:0.999536750157639 16351 chr22 24584751 24584751 1 + G A rs552379112 24584732 + 24584712 24584752 41 CAGATTCCAATAGCTCACTCCCTAGAGCCTGACGCCGGGGC CAGATTCCAATAGCTCACTCCCTAGAGCCTGACGCCGGGAC < 41bp 1 0.0951101028176674 1 0.509015202522278 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SUSD2 ENSG00000099994 UTR3 Human protein_coding chr22:24584732 chr22:24584751 . . 0 40 hm5C_associated_SNPs_14611 0 0 1 0 0 Exosome 1 0.500231643921015 0.981969594955444 0.999536712157969 hm5C_site_16351 DeepMRMD:0.981969594955444;iRNA_m5C:0.999536712157969 16352 chr22 24666835 24666835 1 + C G rs5760299 24666822 + 24666802 24666842 41 CGCGAGGGAGGCCGGGCGGCCCGGCAAGCGGCGCTGCGGGG CGCGAGGGAGGCCGGGCGGCCCGGCAAGCGGCGGTGCGGGG < 41bp 1 0.40652602286835 1 0.646512508392334 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPECC1L-ADORA2A ENSG00000100014 UTR5 Human protein_coding chr22:24666822 chr22:24666835 . . 0 34 hm5C_associated_SNPs_14613 0 0 1 0 0 exosome 1 0.500231643921269 0.706974983215332 0.999536712157462 hm5C_site_16352 DeepMRMD:0.706974983215332;iRNA_m5C:0.999536712157462 16353 chr22 24811855 24811855 1 + T G rs368701071 24811875 + 24811855 24811895 41 TTTTTGGGAATAGGGATCTCCCGTGTGCCTAACGCAGTAGC GTTTTGGGAATAGGGATCTCCCGTGTGCCTAACGCAGTAGC < 41bp 1 0.170727165140626 1 0.373452067375183 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPECC1L-ADORA2A ENSG00000100014 UTR3 Human protein_coding chr22:24811875 chr22:24811855 . . 0 1 hm5C_associated_SNPs_14614 0 0 1 0 0 exosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_16353 DeepMRMD:1;iRNA_m5C:0.999536712157818 16354 chr22 24813374 24813374 1 + C A rs544258977 24813358 + 24813338 24813378 41 TGTGGCCCTACCCCAAGGCGCACTTCCTCATGTGGGCAGAT TGTGGCCCTACCCCAAGGCGCACTTCCTCATGTGGGAAGAT < 41bp 1 0.133559272024953 1 0.0125558078289032 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPECC1L-ADORA2A ENSG00000100014 UTR3 Human protein_coding chr22:24813358 chr22:24813374 . . 0 37 hm5C_associated_SNPs_14615 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16354 DeepMRMD:1;iRNA_m5C:0.999536712157815 16355 chr22 25570273 25570273 1 + G A rs5760891 25570257 + 25570237 25570277 41 CACATCGACAAGGAAACAGCCCCCCAGCAGCCGTTTGTCTT CACATCGACAAGGAAACAGCCCCCCAGCAGCCGTTTATCTT < 41bp 1 0.0373771936197011 1 0.0323333144187927 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KIAA1671 ENSG00000197077 CDS Human protein_coding chr22:25570257 chr22:25570273 synonymous SNV . 0 37 hm5C_associated_SNPs_14618 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_16355 DeepMRMD:1;iRNA_m5C:0.999536712157815 16356 chr22 25570285 25570285 1 + C T rs56351192 25570299 + 25570279 25570319 41 TCTGTCCTCCCAAACGGAGCCCACCTCGGCAGGGGACCAGT TCTGTCTTCCCAAACGGAGCCCACCTCGGCAGGGGACCAGT < 41bp 1 0.0284432098056824 1 0.0685781240463257 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1671 ENSG00000197077 CDS Human protein_coding chr22:25570299 chr22:25570285 synonymous SNV . 0 7 hm5C_associated_SNPs_14619 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_16356 DeepMRMD:1;iRNA_m5C:0.999536712157814 16357 chr22 26242229 26242229 1 + C T rs2859407 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGCGGTGAGGAGGAAAGCCCCGTGTTCCCAGATCAAGC < 41bp 1 0.290013215205033 1 0.162285357713699 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242229 synonymous SNV . 0 28 hm5C_associated_SNPs_14620 0 0 0 0 1 chromatin 1 0.500231643921285 1 0.999536712157429 hm5C_site_16357 DeepMRMD:1;iRNA_m5C:0.999536712157429 16358 chr22 26291145 26291145 1 + C T rs118112071 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGCGCTTTGACTGTGCTCAGATG < 41bp 1 0.123594414615821 1 0.3464615046978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291145 synonymous SNV . 0 26 hm5C_associated_SNPs_14621 0 0 1 0 2 chromatin 1 0.500314112122978 1 0.999371775754045 hm5C_site_16358 DeepMRMD:1;iRNA_m5C:0.999371775754045 16359 chr22 26422841 26422841 1 + C T rs182723137 26422843 + 26422823 26422863 41 GGCAGTGACGAGGGAAACCTCTCGCTGAGGGTTGGGGCAAA GGCAGTGACGAGGGAAACTTCTCGCTGAGGGTTGGGGCAAA < 41bp 1 0.499649834449425 1 0.899943709373474 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26422843 chr22:26422841 nonsynonymous SNV 0.503 5 19 hm5C_associated_SNPs_14622 0 0 0 0 0 chromatin 1 0.500231643921092 0.200112581253052 0.999536712157815 hm5C_site_16359 DeepMRMD:0.200112581253052;iRNA_m5C:0.999536712157815 16360 chr22 29184245 29184245 1 + T C rs568694373 29184234 + 29184214 29184254 41 GCCATTTGATAAACTTCTGCCTTGTAGTCATTGTTTGATGG GCCATTTGATAAACTTCTGCCTTGTAGTCATCGTTTGATGG < 41bp 1 0.170671070498206 1 0.0458030998706818 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC117 ENSG00000159873 UTR3 Human protein_coding chr22:29184234 chr22:29184245 . . 0 32 hm5C_associated_SNPs_14623 0 0 1 2 0 Ribosome 1 0.500231746083572 1 0.999536507832857 hm5C_site_16360 DeepMRMD:1;iRNA_m5C:0.999536507832857 16361 chr22 29445776 29445776 1 + G A rs535336653 29445774 + 29445754 29445794 41 TTCAGCTGCTATCACGGCCACCGCTCGGTGTGCAGTGGCTA TTCAGCTGCTATCACGGCCACCACTCGGTGTGCAGTGGCTA < 41bp 1 0.0521316670581245 1 0.0278231799602509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29445774 chr22:29445776 nonsynonymous SNV 0.972 4 23 hm5C_associated_SNPs_14624 0 0 0 0 0 Ribosome 1 0.500603881316669 1 0.998792237366661 hm5C_site_16361 DeepMRMD:1;iRNA_m5C:0.998792237366661 16362 chr22 29533437 29533437 1 + C T rs61752343 29533451 + 29533431 29533471 41 ACCATCCGGGTTCCGGGGGCCTCCCACATCCACTTCAGCTT ACCATCTGGGTTCCGGGGGCCTCCCACATCCACTTCAGCTT < 41bp 1 0.203720532361496 1 0.147630751132965 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533451 chr22:29533437 nonsynonymous SNV 0.987 1 7 hm5C_associated_SNPs_14625 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921096 1 0.999536712157808 hm5C_site_16362 DeepMRMD:1;iRNA_m5C:0.999536712157808 16363 chr22 29540198 29540198 1 + T G rs12485095 29540197 + 29540177 29540217 41 CTCCCCCAAGCCCTGAGCCACTGCCTGCTGGGGCTCCTACT CTCCCCCAAGCCCTGAGCCACGGCCTGCTGGGGCTCCTACT < 41bp 1 0.43921609514516 1 0.359424382448196 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN1 ENSG00000183762 UTR3 Human protein_coding chr22:29540197 chr22:29540198 . . 0 22 hm5C_associated_SNPs_14626 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16363 DeepMRMD:1;iRNA_m5C:0.999536712157815 16364 chr22 29540524 29540524 1 + G A rs574948309 29540530 + 29540510 29540550 41 GGCCTGTCACACAGGAGGACCGCTGGAAACATACCAACACG GGCCTGTCACACAGAAGGACCGCTGGAAACATACCAACACG < 41bp 1 0.439622075214305 1 0.196621119976044 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN1 ENSG00000183762 UTR3 Human protein_coding chr22:29540530 chr22:29540524 . . 0 15 hm5C_associated_SNPs_14627 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16364 DeepMRMD:1;iRNA_m5C:0.999536712157815 16365 chr22 29540550 29540550 1 + G A rs545504528 29540530 + 29540510 29540550 41 GGCCTGTCACACAGGAGGACCGCTGGAAACATACCAACACG GGCCTGTCACACAGGAGGACCGCTGGAAACATACCAACACA < 41bp 1 0.451708971485642 1 0.315617978572845 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN1 ENSG00000183762 UTR3 Human protein_coding chr22:29540530 chr22:29540550 . . 0 41 hm5C_associated_SNPs_14628 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16365 DeepMRMD:1;iRNA_m5C:0.999536712157815 16366 chr22 29541794 29541794 1 + C T rs73397005 29541791 + 29541771 29541811 41 GAGTGGGCTCTGGCTCAAGACTCCAATCGGCCAGAAGCCCA GAGTGGGCTCTGGCTCAAGACTCTAATCGGCCAGAAGCCCA < 41bp 1 0.59553079910441 1 0.739791989326477 experiment 0.808938401791181 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KREMEN1 ENSG00000183762 UTR3 Human protein_coding chr22:29541791 chr22:29541794 . . 0 24 hm5C_associated_SNPs_14629 0 0 1 0 0 Endoplasmic reticulum 1 0.500231647779512 0.520416021347046 0.999536704440976 hm5C_site_16366 DeepMRMD:0.520416021347046;iRNA_m5C:0.999536704440976 16367 chr22 29664281 29664281 1 + C A rs111892587 29664296 + 29664276 29664316 41 GAAAGCGAGAGGGAGACGGACGTTGAGAGAACGAGGAGGAA GAAAGAGAGAGGGAGACGGACGTTGAGAGAACGAGGAGGAA < 41bp 1 0.306083190378327 1 0.154985696077347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 UTR5 Human protein_coding chr22:29664296 chr22:29664281 . . 0 6 hm5C_associated_SNPs_14631 0 0 1 0 1 Cytosol 1 0.500231647344795 1 0.99953670531041 hm5C_site_16367 DeepMRMD:1;iRNA_m5C:0.99953670531041 16368 chr22 29695761 29695761 1 + C T rs111270799 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG TCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG < 41bp 1 0.440743109158907 1 0.225459575653076 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695761 synonymous SNV . 0 1 hm5C_associated_SNPs_14632 0 0 1 0 1 Cytosol 1 0.500231645083067 1 0.999536709833866 hm5C_site_16368 DeepMRMD:1;iRNA_m5C:0.999536709833866 16369 chr22 30403307 30403307 1 + C T rs146523702 30403290 + 30403270 30403310 41 ACTTTCCCAATGGGGGAGACCTTTCTGACGTGGAGTTCGGT ACTTTCCCAATGGGGGAGACCTTTCTGACGTGGAGTTTGGT < 41bp 1 0.0201170213807065 1 0.0582224130630493 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30403290 chr22:30403307 synonymous SNV . 0 38 hm5C_associated_SNPs_14633 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16369 DeepMRMD:1;iRNA_m5C:0.999536712157815 16370 chr22 30422910 30422910 1 + A G rs113914050 30422914 + 30422894 30422934 41 GCAGTCCCCCTTTGCCACTCCTGGCTGTCTGAGTGGGCACT GCAGTCCCCCTTTGCCGCTCCTGGCTGTCTGAGTGGGCACT < 41bp 1 0.184794572077015 1 0.0481144189834595 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HORMAD2-AS1 ENSG00000227117 ncRNA_intronic Human antisense chr22:30422914 chr22:30422910 . . 0 17 hm5C_associated_SNPs_14634 0 0 1 0 0 unknown 1 0.500231643921104 1 0.999536712157793 hm5C_site_16370 DeepMRMD:1;iRNA_m5C:0.999536712157793 16371 chr22 31489566 31489566 1 + G A rs116431662 31489570 + 31489550 31489590 41 GGCAGCCGAGGTAGCTGTAGCCACCGTGGAGCCGGTGGCCC GGCAGCCGAGGTAGCTATAGCCACCGTGGAGCCGGTGGCCC < 41bp 1 0.20730582259353 1 0.349182039499283 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control SMTN ENSG00000183963 CDS Human protein_coding chr22:31489570 chr22:31489566 nonsynonymous SNV 0.185 2 17 hm5C_associated_SNPs_14635 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16371 DeepMRMD:1;iRNA_m5C:0.999536712157815 16372 chr22 31489575 31489575 1 + G A rs62236130 31489570 + 31489550 31489590 41 GGCAGCCGAGGTAGCTGTAGCCACCGTGGAGCCGGTGGCCC GGCAGCCGAGGTAGCTGTAGCCACCATGGAGCCGGTGGCCC < 41bp 1 0.144371996708577 1 0.468269526958466 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control SMTN ENSG00000183963 CDS Human protein_coding chr22:31489570 chr22:31489575 nonsynonymous SNV 0.052 2 26 hm5C_associated_SNPs_14636 0 0 0 0 0 Cytosol 1 0.500231643920843 1 0.999536712158315 hm5C_site_16372 DeepMRMD:1;iRNA_m5C:0.999536712158315 16373 chr22 31673111 31673111 1 + A G rs3747153 31673093 + 31673073 31673113 41 CTGCTGGACAAGATCCGGGCCATGCAGAAGCTGAGCACACC CTGCTGGACAAGATCCGGGCCATGCAGAAGCTGAGCACGCC < 41bp 1 0.0721279035179232 1 0.0310700535774231 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31673093 chr22:31673111 synonymous SNV . 0 39 hm5C_associated_SNPs_14637 0 0 0 0 0 Cytosol 1 0.500231643920366 1 0.999536712159268 hm5C_site_16373 DeepMRMD:1;iRNA_m5C:0.999536712159268 16374 chr22 31795604 31795604 1 + G T rs368688522 31795595 + 31795575 31795615 41 GCGCCTGCGTGCTGCAGTAGCGCCTGGTGGCGGTGGCAGTT GCGCCTGCGTGCTGCAGTAGCGCCTGGTGTCGGTGGCAGTT < 41bp 1 0.696409171693618 1 0.196548312902451 experiment 0.607181656612763 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DRG1 ENSG00000185721 UTR5 Human protein_coding chr22:31795595 chr22:31795604 . . 0 30 hm5C_associated_SNPs_14638 0 0 1 0 0 Ribosome 1 0.500232236290233 1 0.999535527419533 hm5C_site_16374 DeepMRMD:1;iRNA_m5C:0.999535527419533 16375 chr22 31795604 31795604 1 + G T rs368688522 31795611 + 31795591 31795631 41 GTAGCGCCTGGTGGCGGTGGCAGTTTGCCCGCGGGTGTGTG GTAGCGCCTGGTGTCGGTGGCAGTTTGCCCGCGGGTGTGTG < 41bp 1 0.440352538059648 1 0.287464886903763 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DRG1 ENSG00000185721 UTR5 Human protein_coding chr22:31795611 chr22:31795604 . . 0 14 hm5C_associated_SNPs_14640 0 0 1 0 0 Ribosome 1 0.500231644267413 1 0.999536711465175 hm5C_site_16375 DeepMRMD:1;iRNA_m5C:0.999536711465175 16376 chr22 31998612 31998612 1 + G A rs2006771 31998614 + 31998594 31998634 41 CCATCCTTCACGCAGAGCGACAGCTTCTGTATAGGTCTTGG CCATCCTTCACGCAGAGCAACAGCTTCTGTATAGGTCTTGG < 41bp 1 0.219200987718247 1 0.184147715568542 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SFI1 ENSG00000198089 CDS Human protein_coding chr22:31998614 chr22:31998612 nonsynonymous SNV 0.313 0 19 hm5C_associated_SNPs_14641 0 1 0 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_16376 DeepMRMD:1;iRNA_m5C:0.999536712157815 16377 chr22 32174124 32174124 1 + C T rs558913954 32174133 + 32174113 32174153 41 AATGAGAAGGTCATGTGTGGCTACATCAGTGAAGATACCAG AATGAGAAGGTTATGTGTGGCTACATCAGTGAAGATACCAG < 41bp 1 0.459168788039121 1 0.84168815612793 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32174133 chr22:32174124 synonymous SNV . 0 12 hm5C_associated_SNPs_14642 1 0 1 0 1 chromatin 1 0.500231643921095 0.31662368774414 0.999536712157811 hm5C_site_16377 DeepMRMD:0.31662368774414;iRNA_m5C:0.999536712157811 Epilepsy, familial focal, with variable foci 1 Epilepsy, familial focal, with variable foci 1 16378 chr22 32234797 32234797 1 + G A rs61731664 32234816 + 32234796 32234836 41 CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG CACCCCCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG < 41bp 1 0.133662296857845 1 0.0595917999744415 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32234816 chr22:32234797 synonymous SNV . 0 2 hm5C_associated_SNPs_14643 2 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16378 DeepMRMD:1;iRNA_m5C:0.999536712157815 Epilepsy, familial focal, with variable foci 1 Epilepsy, familial focal, with variable foci 1 16379 chr22 32870893 32870893 1 + C T rs531209490 32870900 + 32870880 32870920 41 GGTAGTCGCCAGTCCGGGGTCGTCGCCGTTTGGGGCGGGAG GGTAGTCGCCAGTTCGGGGTCGTCGCCGTTTGGGGCGGGAG < 41bp 1 0.499956267183756 1 0.487345695495605 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FBXO7 ENSG00000100225 UTR5 Human protein_coding chr22:32870900 chr22:32870893 . . 0 14 hm5C_associated_SNPs_14645 0 0 1 0 0 chromatin 1 0.500231643921085 1 0.999536712157829 hm5C_site_16379 DeepMRMD:1;iRNA_m5C:0.999536712157829 16380 chr22 32889249 32889249 1 + A G rs147911892 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAGGTTTTTGTATCTGCGTGATTTTCGAGGTGAT < 41bp 1 0.547177859671872 1 0.289457559585571 experiment 0.905644280656256 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889249 synonymous SNV . 0 17 hm5C_associated_SNPs_14646 1 0 1 0 1 chromatin 1 0.500231643786903 1 0.999536712426195 hm5C_site_16380 DeepMRMD:1;iRNA_m5C:0.999536712426195 Parkinson Disease, Recessive Parkinson Disease, Recessive 16381 chr22 35653490 35653490 1 + C G rs572271261 35653508 + 35653488 35653528 41 CTCCTTCTCCAAGATGGCGGCGATCGGCGGCGTTGAGGCGG CTGCTTCTCCAAGATGGCGGCGATCGGCGGCGTTGAGGCGG < 41bp 1 0.29597252180207 1 0.3313148021698 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMGXB4 ENSG00000100281 UTR5 Human protein_coding chr22:35653508 chr22:35653490 . . 0 3 hm5C_associated_SNPs_14648 0 0 1 0 1 Ribosome 1 0.500231725115441 1 0.999536549769117 hm5C_site_16381 DeepMRMD:1;iRNA_m5C:0.999536549769117 16382 chr22 35653521 35653521 1 + T A rs554503605 35653508 + 35653488 35653528 41 CTCCTTCTCCAAGATGGCGGCGATCGGCGGCGTTGAGGCGG CTCCTTCTCCAAGATGGCGGCGATCGGCGGCGTAGAGGCGG < 41bp 1 0.264231753012703 1 0.317162930965424 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMGXB4 ENSG00000100281 UTR5 Human protein_coding chr22:35653508 chr22:35653521 . . 0 34 hm5C_associated_SNPs_14649 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16382 DeepMRMD:1;iRNA_m5C:0.999536712157815 16383 chr22 35690532 35690532 1 + A G rs4821392 35690531 + 35690511 35690551 41 GATTTTTGGGTTCATCTTATCAGTTCCCCTGGTGGGCAGAT GATTTTTGGGTTCATCTTATCGGTTCCCCTGGTGGGCAGAT < 41bp 1 0.396874827252278 1 0.235664695501328 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HMGXB4 ENSG00000100281 UTR3 Human protein_coding chr22:35690531 chr22:35690532 . . 0 22 hm5C_associated_SNPs_14650 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16383 DeepMRMD:1;iRNA_m5C:0.999536712157815 16384 chr22 36054862 36054862 1 + C G rs143660228 36054872 + 36054852 36054892 41 GCCACCTCTACTGCTGTCATCTCTGGAGTGATGAGCCTCCT GCCACCTCTAGTGCTGTCATCTCTGGAGTGATGAGCCTCCT < 41bp 1 0.523893089044133 1 0.719786763191223 experiment 0.952213821911734 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APOL6 ENSG00000221963 CDS Human protein_coding chr22:36054872 chr22:36054862 nonsynonymous SNV 0.000 0 11 hm5C_associated_SNPs_14651 0 0 0 1 0 Nucleus 1 0.500231643684639 0.560426473617554 0.999536712630721 hm5C_site_16384 DeepMRMD:0.560426473617554;iRNA_m5C:0.999536712630721 16385 chr22 36662737 36662737 1 + G C rs151210481 36662726 + 36662706 36662746 41 CTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGAT CTTTGGGAGGCCAAGGCGGGCGGATCACGAGCTCAGGAGAT < 41bp 1 0.680636469888667 1 0.572174608707428 experiment 0.638727060222666 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control APOL1 ENSG00000100342 UTR3 Human protein_coding chr22:36662726 chr22:36662737 . . 0 32 hm5C_associated_SNPs_14658 0 0 0 0 0 Nucleus 1 0.500231643921237 0.855650782585144 0.999536712157526 hm5C_site_16385 DeepMRMD:0.855650782585144;iRNA_m5C:0.999536712157526 16386 chr22 37423094 37423094 1 + A G rs111965320 37423101 + 37423081 37423121 41 CCTCCCGGGTTCAAGTGATTCTCCTGCCTTAGCCTCCCGAG CCTCCCGGGTTCAGGTGATTCTCCTGCCTTAGCCTCCCGAG < 41bp 1 0.694209384154489 1 0.490648597478867 experiment 0.611581231691022 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MPST ENSG00000128309 intronic Human protein_coding chr22:37423101 chr22:37423094 . . 0 14 hm5C_associated_SNPs_14661 0 0 0 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_16386 DeepMRMD:1;iRNA_m5C:0.999536712157815 16387 chr22 37423094 37423094 1 + A G rs111965320 37423103 + 37423083 37423123 41 TCCCGGGTTCAAGTGATTCTCCTGCCTTAGCCTCCCGAGTA TCCCGGGTTCAGGTGATTCTCCTGCCTTAGCCTCCCGAGTA < 41bp 1 0.234905222088412 1 0.404204100370407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MPST ENSG00000128309 intronic Human protein_coding chr22:37423103 chr22:37423094 . . 0 12 hm5C_associated_SNPs_14662 0 0 0 0 0 chromatin 1 0.500231643924245 1 0.999536712151509 hm5C_site_16387 DeepMRMD:1;iRNA_m5C:0.999536712151509 16388 chr22 37423094 37423094 1 + A G rs111965320 37423104 + 37423084 37423124 41 CCCGGGTTCAAGTGATTCTCCTGCCTTAGCCTCCCGAGTAG CCCGGGTTCAGGTGATTCTCCTGCCTTAGCCTCCCGAGTAG < 41bp 1 0.491490768450416 1 0.215038418769836 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MPST ENSG00000128309 intronic Human protein_coding chr22:37423104 chr22:37423094 . . 0 11 hm5C_associated_SNPs_14663 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16388 DeepMRMD:1;iRNA_m5C:0.999536712157815 16389 chr22 37423094 37423094 1 + A G rs111965320 37423113 + 37423093 37423133 41 AAGTGATTCTCCTGCCTTAGCCTCCCGAGTAGCTGGGATTA AGGTGATTCTCCTGCCTTAGCCTCCCGAGTAGCTGGGATTA < 41bp 1 0.0638689593371933 1 0.0688199102878571 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MPST ENSG00000128309 intronic Human protein_coding chr22:37423113 chr22:37423094 . . 0 2 hm5C_associated_SNPs_14664 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16389 DeepMRMD:1;iRNA_m5C:0.999536712157815 16390 chr22 37423094 37423094 1 + A G rs111965320 37423114 + 37423094 37423134 41 AGTGATTCTCCTGCCTTAGCCTCCCGAGTAGCTGGGATTAC GGTGATTCTCCTGCCTTAGCCTCCCGAGTAGCTGGGATTAC < 41bp 1 0.237875854539085 1 0.297242701053619 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MPST ENSG00000128309 intronic Human protein_coding chr22:37423114 chr22:37423094 . . 0 1 hm5C_associated_SNPs_14665 0 0 0 0 0 chromatin 1 0.500231591605706 1 0.999536816788589 hm5C_site_16390 DeepMRMD:1;iRNA_m5C:0.999536816788589 16391 chr22 37962126 37962126 1 + T A rs138215550 37962123 + 37962103 37962143 41 TGCCGACCACCTCGGGGGTGCTTTCTCTGCGCTTGAACATC TGCCGACCACCTCGGGGGTGCTTACTCTGCGCTTGAACATC < 41bp 1 0.037170168494517 1 0.0349476635456085 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC42EP1 ENSG00000128283 UTR5 Human protein_coding chr22:37962123 chr22:37962126 . . 0 24 hm5C_associated_SNPs_14669 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_16391 DeepMRMD:1;iRNA_m5C:0.999536712157813 16392 chr22 38013867 38013867 1 + G A rs146919706 38013855 + 38013835 38013875 41 AAAAGGAAAAATAGGCCGGGCTGGTGGCTCACGCCTGTAAT AAAAGGAAAAATAGGCCGGGCTGGTGGCTCACACCTGTAAT < 41bp 1 0.111136253399161 1 0.180974870920181 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GGA1 ENSG00000100083 UTR3 Human protein_coding chr22:38013855 chr22:38013867 . . 0 33 hm5C_associated_SNPs_14670 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16392 DeepMRMD:1;iRNA_m5C:0.999536712157815 16393 chr22 38021889 38021889 1 + C T rs147657157 38021903 + 38021883 38021923 41 CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG CCCTGGTGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG < 41bp 1 0.639292278616606 1 0.0991578996181488 experiment 0.721415442766788 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021903 chr22:38021889 synonymous SNV . 0 7 hm5C_associated_SNPs_14671 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16393 DeepMRMD:1;iRNA_m5C:0.999536712157815 16394 chr22 38028073 38028073 1 + A G rs12170061 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTGCCCGGGACCCGCTGCCAGGGCGCTCCGACGTG < 41bp 1 0.361846852201944 1 0.070324182510376 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028073 synonymous SNV . 0 20 hm5C_associated_SNPs_14672 0 0 1 0 2 chromatin 1 0.500231645262081 1 0.999536709475839 hm5C_site_16394 DeepMRMD:1;iRNA_m5C:0.999536709475839 16395 chr22 38028076 38028076 1 + G T rs193147072 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTGCCCGGGACCCACTTCCAGGGCGCTCCGACGTG < 41bp 1 0.157977999951002 1 0.0561263561248779 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028076 synonymous SNV . 0 23 hm5C_associated_SNPs_14673 0 0 1 0 2 chromatin 1 0.500231643921104 1 0.999536712157791 hm5C_site_16395 DeepMRMD:1;iRNA_m5C:0.999536712157791 16396 chr22 38028942 38028942 1 + C A rs11913963 38028959 + 38028939 38028979 41 TGCCGCTGGGGTCTCCATCACCGGGACCTGGAGAGGGAGGG TGCAGCTGGGGTCTCCATCACCGGGACCTGGAGAGGGAGGG < 41bp 1 0.639532439117662 1 0.834700524806976 experiment 0.720935121764676 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control GGA1 ENSG00000100083 UTR3 Human protein_coding chr22:38028959 chr22:38028942 . . 0 4 hm5C_associated_SNPs_14674 0 0 1 0 0 chromatin 1 0.500231643921093 0.330598950386048 0.999536712157815 hm5C_site_16396 DeepMRMD:0.330598950386048;iRNA_m5C:0.999536712157815 16397 chr22 38035478 38035478 1 + G A rs367969342 38035495 + 38035475 38035515 41 CGGGCACAACCTGTGGACGGCCGCGGCCGGCGGACACACAG CGGACACAACCTGTGGACGGCCGCGGCCGGCGGACACACAG < 41bp 1 0.521867579229792 1 0.42114520072937 experiment 0.956264841540416 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SH3BP1 ENSG00000100092 UTR5 Human protein_coding chr22:38035495 chr22:38035478 . . 0 4 hm5C_associated_SNPs_14675 0 0 0 0 0 cytosol 1 0.500231574336931 1 0.999536851326137 hm5C_site_16397 DeepMRMD:1;iRNA_m5C:0.999536851326137 16398 chr22 38035510 38035510 1 + A C rs575465353 38035495 + 38035475 38035515 41 CGGGCACAACCTGTGGACGGCCGCGGCCGGCGGACACACAG CGGGCACAACCTGTGGACGGCCGCGGCCGGCGGACCCACAG < 41bp 1 0.584136165153608 1 0.573786199092865 experiment 0.831727669692785 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SH3BP1 ENSG00000100092 UTR5 Human protein_coding chr22:38035495 chr22:38035510 . . 0 36 hm5C_associated_SNPs_14677 0 0 0 0 0 cytosol 1 0.500231627091258 0.85242760181427 0.999536745817484 hm5C_site_16398 DeepMRMD:0.85242760181427;iRNA_m5C:0.999536745817484 16399 chr22 38046666 38046666 1 + C T rs929038 38046649 + 38046629 38046669 41 CTTCCGTCCACTGCCGTGCCCACCCCAGCCACCACCCCGGC CTTCCGTCCACTGCCGTGCCCACCCCAGCCACCACCCTGGC < 41bp 1 0.263742829759884 1 0.0158922970294952 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046649 chr22:38046666 nonsynonymous SNV 0.001 3 38 hm5C_associated_SNPs_14679 0 0 1 0 0 cytosol 1 0.500231643921088 1 0.999536712157824 hm5C_site_16399 DeepMRMD:1;iRNA_m5C:0.999536712157824 16400 chr22 38155661 38155661 1 + C T rs77551684 38155651 + 38155631 38155671 41 CGAGAGTCACTCCCTGAACACAGGGAAATCCTGCCGAGGCC CGAGAGTCACTCCCTGAACACAGGGAAATCTTGCCGAGGCC < 41bp 1 0.434927913408922 1 0.828328609466553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control TRIOBP ENSG00000100106 UTR3 Human protein_coding chr22:38155651 chr22:38155661 . . 0 31 hm5C_associated_SNPs_14680 0 0 0 1 0 Ribosome 1 0.500231643921107 0.343342781066894 0.999536712157786 hm5C_site_16400 DeepMRMD:0.343342781066894;iRNA_m5C:0.999536712157786 16401 chr22 38172018 38172018 1 + C T rs145284375 38172014 + 38171994 38172034 41 GATGCCTGCCACTGGCAGCTCTGCCGTCCATCCTCACCATC GATGCCTGCCACTGGCAGCTCTGCTGTCCATCCTCACCATC < 41bp 1 0.423546131450612 1 0.179971128702164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TRIOBP ENSG00000100106 UTR3 Human protein_coding chr22:38172014 chr22:38172018 . . 0 25 hm5C_associated_SNPs_14681 0 0 0 0 0 Ribosome 1 0.500231643646487 1 0.999536712707027 hm5C_site_16401 DeepMRMD:1;iRNA_m5C:0.999536712707027 16402 chr22 38172237 38172237 1 + C T rs574972054 38172257 + 38172237 38172277 41 CGTGAAATCGCACTGCCCCACTATCAGAATAGCTCAGAGGA TGTGAAATCGCACTGCCCCACTATCAGAATAGCTCAGAGGA < 41bp 1 0.0743971706378611 1 0.142949312925339 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIOBP ENSG00000100106 UTR3 Human protein_coding chr22:38172257 chr22:38172237 . . 0 1 hm5C_associated_SNPs_14682 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16402 DeepMRMD:1;iRNA_m5C:0.999536712157815 16403 chr22 38172238 38172238 1 + G A rs189865114 38172257 + 38172237 38172277 41 CGTGAAATCGCACTGCCCCACTATCAGAATAGCTCAGAGGA CATGAAATCGCACTGCCCCACTATCAGAATAGCTCAGAGGA < 41bp 1 0.0736472776467002 1 0.155815452337265 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIOBP ENSG00000100106 UTR3 Human protein_coding chr22:38172257 chr22:38172238 . . 0 2 hm5C_associated_SNPs_14683 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16403 DeepMRMD:1;iRNA_m5C:0.999536712157815 16404 chr22 38212762 38212762 1 + A G rs13911 38212763 + 38212743 38212783 41 GAAGAGCCAAGGTCCGCCTACTGCCACAGGGTCAAAGGAGG GAAGAGCCAAGGTCCGCCTGCTGCCACAGGGTCAAAGGAGG < 41bp 1 0.0823442905011286 1 0.113874882459641 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GCAT ENSG00000100116 UTR3 Human protein_coding chr22:38212763 chr22:38212762 . . 0 20 hm5C_associated_SNPs_14684 0 0 0 1 0 Cytosol 1 0.500231643918505 1 0.99953671216299 hm5C_site_16404 DeepMRMD:1;iRNA_m5C:0.99953671216299 16405 chr22 38213054 38213054 1 + G A rs542771771 38213053 + 38213033 38213073 41 TTAAGATGGGACCCAGTGGCCGGGCACGGTGGCTCAGGCCT TTAAGATGGGACCCAGTGGCCAGGCACGGTGGCTCAGGCCT < 41bp 1 0.692244290148767 1 0.74994945526123 experiment 0.615511419702466 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCAT ENSG00000100116 UTR3 Human protein_coding chr22:38213053 chr22:38213054 . . 0 22 hm5C_associated_SNPs_14685 0 0 0 0 0 Cytosol 1 0.500231643923773 0.50010108947754 0.999536712152454 hm5C_site_16405 DeepMRMD:0.50010108947754;iRNA_m5C:0.999536712152454 16406 chr22 38213102 38213102 1 + T C rs2269617 38213096 + 38213076 38213116 41 AATCCCAGCACTTTGGGAGGCCAAGGTAGGCGGATCACCTG AATCCCAGCACTTTGGGAGGCCAAGGCAGGCGGATCACCTG < 41bp 1 0.663266392965598 1 0.750747740268707 experiment 0.673467214068804 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GCAT ENSG00000100116 UTR3 Human protein_coding chr22:38213096 chr22:38213102 . . 0 27 hm5C_associated_SNPs_14686 0 0 0 1 0 Cytosol 1 0.500231643921092 0.498504519462586 0.999536712157815 hm5C_site_16406 DeepMRMD:0.498504519462586;iRNA_m5C:0.999536712157815 16407 chr22 38313787 38313787 1 + A T rs140198916 38313800 + 38313780 38313820 41 TGGAACCAGAAGATGTGGCTCAGGTAGGCAGATACCTGGAG TGGAACCTGAAGATGTGGCTCAGGTAGGCAGATACCTGGAG < 41bp 1 0.582809578700551 1 0.413079082965851 experiment 0.834380842598899 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38313800 chr22:38313787 synonymous SNV . 0 8 hm5C_associated_SNPs_14687 0 0 1 0 2 Ribosome 1 0.500231644093169 1 0.999536711813662 hm5C_site_16407 DeepMRMD:1;iRNA_m5C:0.999536711813662 16408 chr22 38611045 38611045 1 + C A rs76165778 38611057 + 38611037 38611077 41 TGCAGCCCCCCAAACTGGGACCGAATGACCCTGGGAAGGGG TGCAGCCCACCAAACTGGGACCGAATGACCCTGGGAAGGGG < 41bp 1 0.353376433238633 1 0.255148530006409 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAFF ENSG00000185022 UTR3 Human protein_coding chr22:38611057 chr22:38611045 . . 0 9 hm5C_associated_SNPs_14688 0 0 1 0 0 Cytosol 1 0.500231643922241 1 0.999536712155518 hm5C_site_16408 DeepMRMD:1;iRNA_m5C:0.999536712155518 16409 chr22 38611045 38611045 1 + C A rs76165778 38611058 + 38611038 38611078 41 GCAGCCCCCCAAACTGGGACCGAATGACCCTGGGAAGGGGA GCAGCCCACCAAACTGGGACCGAATGACCCTGGGAAGGGGA < 41bp 1 0.3463173464445 1 0.213509142398834 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAFF ENSG00000185022 UTR3 Human protein_coding chr22:38611058 chr22:38611045 . . 0 8 hm5C_associated_SNPs_14689 0 0 1 0 0 Cytosol 1 0.50023019779255 1 0.999539604414901 hm5C_site_16409 DeepMRMD:1;iRNA_m5C:0.999539604414901 16410 chr22 38879135 38879135 1 + A G rs555348091 38879134 + 38879114 38879154 41 TTTACTGGTTTGAATTTTTTCAAACCAGTGGCTGATACCTG TTTACTGGTTTGAATTTTTTCGAACCAGTGGCTGATACCTG < 41bp 1 0.399959196503767 1 0.742640554904938 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDELR3 ENSG00000100196 UTR3 Human protein_coding chr22:38879134 chr22:38879135 . . 0 22 hm5C_associated_SNPs_14691 0 0 1 0 0 Ribosome 1 0.50023164392106 0.514718890190124 0.99953671215788 hm5C_site_16410 DeepMRMD:0.514718890190124;iRNA_m5C:0.99953671215788 16411 chr22 39125529 39125529 1 + G A rs16999301 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCAACGAAAAAGGGCCCCCTGACGAAACGAGACGA < 41bp 1 0.0355063153175352 1 0.127729505300522 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125529 synonymous SNV . 0 9 hm5C_associated_SNPs_14692 0 0 1 0 1 Ribosome 1 0.500231643922257 1 0.999536712155486 hm5C_site_16411 DeepMRMD:1;iRNA_m5C:0.999536712155486 16412 chr22 39125529 39125529 1 + G A rs16999301 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCAACGAAAAAGGGCCCCCTGACGAAACGAGACGAG < 41bp 1 0.0506123897305643 1 0.216477543115616 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125529 synonymous SNV . 0 8 hm5C_associated_SNPs_14693 0 0 1 0 1 Ribosome 1 0.500231645778501 1 0.999536708442997 hm5C_site_16412 DeepMRMD:1;iRNA_m5C:0.999536708442997 16413 chr22 39125529 39125529 1 + G A rs16999301 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCAACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG < 41bp 1 0.0293653550419287 1 0.201823383569717 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125529 synonymous SNV . 0 7 hm5C_associated_SNPs_14694 0 0 1 0 1 Ribosome 1 0.500231643920962 1 0.999536712158077 hm5C_site_16413 DeepMRMD:1;iRNA_m5C:0.999536712158077 16414 chr22 39125529 39125529 1 + G A rs16999301 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCAACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG < 41bp 1 0.0856763131242929 1 0.168945282697678 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125529 synonymous SNV . 0 6 hm5C_associated_SNPs_14695 0 0 1 0 1 Ribosome 1 0.500231643922709 1 0.999536712154582 hm5C_site_16414 DeepMRMD:1;iRNA_m5C:0.999536712154582 16415 chr22 39125529 39125529 1 + G A rs16999301 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCAACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG < 41bp 1 0.15430576366866 1 0.398516118526459 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125529 synonymous SNV . 0 5 hm5C_associated_SNPs_14696 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_16415 DeepMRMD:1;iRNA_m5C:0.999536712157812 16416 chr22 39125549 39125549 1 + C A rs75211829 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCGACGAAAAAGGGCCCCCTGAAGAAACGAGACGA < 41bp 1 0.0487869222395039 1 0.158724218606949 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125549 nonsynonymous SNV 0.675 0 29 hm5C_associated_SNPs_14697 0 0 1 0 1 Ribosome 1 0.500231643871395 1 0.999536712257211 hm5C_site_16416 DeepMRMD:1;iRNA_m5C:0.999536712257211 16417 chr22 39125549 39125549 1 + C A rs75211829 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCGACGAAAAAGGGCCCCCTGAAGAAACGAGACGAG < 41bp 1 0.0525257183098508 1 0.285941660404205 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125549 nonsynonymous SNV 0.675 0 28 hm5C_associated_SNPs_14698 0 0 1 0 1 Ribosome 1 0.500231643921088 1 0.999536712157824 hm5C_site_16417 DeepMRMD:1;iRNA_m5C:0.999536712157824 16418 chr22 39125549 39125549 1 + C A rs75211829 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCGACGAAAAAGGGCCCCCTGAAGAAACGAGACGAGG < 41bp 1 0.0306740625693296 1 0.149678438901901 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125549 nonsynonymous SNV 0.675 0 27 hm5C_associated_SNPs_14699 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16418 DeepMRMD:1;iRNA_m5C:0.999536712157815 16419 chr22 39125549 39125549 1 + C A rs75211829 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCGACGAAAAAGGGCCCCCTGAAGAAACGAGACGAGGG < 41bp 1 0.0946286143143576 1 0.193418979644775 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125549 nonsynonymous SNV 0.675 0 26 hm5C_associated_SNPs_14700 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16419 DeepMRMD:1;iRNA_m5C:0.999536712157815 16420 chr22 39125549 39125549 1 + C A rs75211829 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCGACGAAAAAGGGCCCCCTGAAGAAACGAGACGAGGGG < 41bp 1 0.524015331940369 1 0.495146334171295 experiment 0.951969336119262 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125549 nonsynonymous SNV 0.675 0 25 hm5C_associated_SNPs_14701 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16420 DeepMRMD:1;iRNA_m5C:0.999536712157815 16421 chr22 39125549 39125549 1 + C A rs75211829 39125568 + 39125548 39125588 41 ACGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT AAGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT < 41bp 1 0.119455193311462 1 0.164951592683792 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125568 chr22:39125549 nonsynonymous SNV 0.675 0 2 hm5C_associated_SNPs_14702 0 0 1 0 1 Ribosome 1 0.500231643920436 1 0.999536712159129 hm5C_site_16421 DeepMRMD:1;iRNA_m5C:0.999536712159129 16422 chr22 39125549 39125549 1 + C A rs75211829 39125569 + 39125549 39125589 41 CGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA AGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA < 41bp 1 0.0431766576375635 1 0.455005764961243 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125569 chr22:39125549 nonsynonymous SNV 0.675 0 1 hm5C_associated_SNPs_14703 0 0 1 0 1 Ribosome 1 0.500231643921076 1 0.999536712157848 hm5C_site_16422 DeepMRMD:1;iRNA_m5C:0.999536712157848 16423 chr22 39125559 39125559 1 + C T rs140918933 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGATGA < 41bp 1 0.0418436403848617 1 0.106825023889542 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125559 synonymous SNV . 0 39 hm5C_associated_SNPs_14704 0 0 1 0 1 Ribosome 1 0.50023157904982 1 0.999536841900359 hm5C_site_16423 DeepMRMD:1;iRNA_m5C:0.999536841900359 16424 chr22 39125559 39125559 1 + C T rs140918933 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGATGAG < 41bp 1 0.048835758389172 1 0.269602119922638 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125559 synonymous SNV . 0 38 hm5C_associated_SNPs_14705 0 0 1 0 1 Ribosome 1 0.50023164391758 1 0.999536712164839 hm5C_site_16424 DeepMRMD:1;iRNA_m5C:0.999536712164839 16425 chr22 39125559 39125559 1 + C T rs140918933 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGATGAGG < 41bp 1 0.0227002091834639 1 0.101267278194427 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125559 synonymous SNV . 0 37 hm5C_associated_SNPs_14706 0 0 1 0 1 Ribosome 1 0.500231643921089 1 0.999536712157822 hm5C_site_16425 DeepMRMD:1;iRNA_m5C:0.999536712157822 16426 chr22 39125559 39125559 1 + C T rs140918933 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGATGAGGG < 41bp 1 0.0700223048144014 1 0.175634503364563 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125559 synonymous SNV . 0 36 hm5C_associated_SNPs_14707 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16426 DeepMRMD:1;iRNA_m5C:0.999536712157815 16427 chr22 39125559 39125559 1 + C T rs140918933 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGATGAGGGG < 41bp 1 0.15560195645457 1 0.379955768585205 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125559 synonymous SNV . 0 35 hm5C_associated_SNPs_14708 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_16427 DeepMRMD:1;iRNA_m5C:0.999536712157815 16428 chr22 39125559 39125559 1 + C T rs140918933 39125568 + 39125548 39125588 41 ACGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT ACGAAACGAGATGAGGGGGGCCCGTCTGGTGGGCCAGCAGT < 41bp 1 0.11739395111363 1 0.194928795099258 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125568 chr22:39125559 synonymous SNV . 0 12 hm5C_associated_SNPs_14709 0 0 1 0 1 Ribosome 1 0.500231646828848 1 0.999536706342303 hm5C_site_16428 DeepMRMD:1;iRNA_m5C:0.999536706342303 16429 chr22 39125559 39125559 1 + C T rs140918933 39125569 + 39125549 39125589 41 CGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA CGAAACGAGATGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA < 41bp 1 0.0404288958450286 1 0.366273701190948 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125569 chr22:39125559 synonymous SNV . 0 11 hm5C_associated_SNPs_14710 0 0 1 0 1 Ribosome 1 0.500231643920785 1 0.999536712158431 hm5C_site_16429 DeepMRMD:1;iRNA_m5C:0.999536712158431 16430 chr22 39125559 39125559 1 + C T rs140918933 39125570 + 39125550 39125590 41 GAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAG GAAACGAGATGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAG < 41bp 1 0.165752529569036 1 0.34943625330925 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125570 chr22:39125559 synonymous SNV . 0 10 hm5C_associated_SNPs_14711 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_16430 DeepMRMD:1;iRNA_m5C:0.999536712157814 16431 chr22 39126748 39126748 1 + C G rs201889482 39126765 + 39126745 39126785 41 CATCATCTCTGGCCACCACTCCACCAGATGGGCAGAGCAGC CATGATCTCTGGCCACCACTCCACCAGATGGGCAGAGCAGC < 41bp 1 0.108314191478718 1 0.630942583084106 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP1 ENSG00000100226 UTR3 Human protein_coding chr22:39126765 chr22:39126748 . . 0 4 hm5C_associated_SNPs_14712 0 0 1 0 0 Ribosome 1 0.500231643920677 0.738114833831788 0.999536712158645 hm5C_site_16431 DeepMRMD:0.738114833831788;iRNA_m5C:0.999536712158645 16432 chr22 39382376 39382376 1 + A C rs144209680 39382388 + 39382368 39382408 41 TTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA TTCGATGACAATTATGCATTCCTGCACCGCACGCTAAAGGA < 41bp 1 0.065979247668163 1 0.111108988523483 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382388 chr22:39382376 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_14713 0 0 0 0 2 exosome 1 0.50023164395702 1 0.99953671208596 hm5C_site_16432 DeepMRMD:1;iRNA_m5C:0.99953671208596 16433 chr22 39414699 39414699 1 + C G rs7584 39414679 + 39414659 39414699 41 TTCCCATCTCCCCAGCATAACCAAATCTTACTAAACTCATC TTCCCATCTCCCCAGCATAACCAAATCTTACTAAACTCATG < 41bp 1 0.493626198025267 1 0.0995625257492065 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3C ENSG00000244509 UTR3 Human protein_coding chr22:39414679 chr22:39414699 . . 0 41 hm5C_associated_SNPs_14714 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16433 DeepMRMD:1;iRNA_m5C:0.999536712157815 16434 chr22 39414699 39414699 1 + C G rs7584 39414680 + 39414660 39414700 41 TCCCATCTCCCCAGCATAACCAAATCTTACTAAACTCATCC TCCCATCTCCCCAGCATAACCAAATCTTACTAAACTCATGC < 41bp 1 0.510411671484164 1 0.650924682617188 experiment 0.979176657031672 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control APOBEC3C ENSG00000244509 UTR3 Human protein_coding chr22:39414680 chr22:39414699 . . 0 40 hm5C_associated_SNPs_14715 0 0 1 0 0 exosome 1 0.50023164402706 0.698150634765624 0.99953671194588 hm5C_site_16434 DeepMRMD:0.698150634765624;iRNA_m5C:0.99953671194588 16435 chr22 39414700 39414700 1 + C T rs12157471 39414680 + 39414660 39414700 41 TCCCATCTCCCCAGCATAACCAAATCTTACTAAACTCATCC TCCCATCTCCCCAGCATAACCAAATCTTACTAAACTCATCT < 41bp 1 0.479360716251331 1 0.569587469100952 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control APOBEC3C ENSG00000244509 UTR3 Human protein_coding chr22:39414680 chr22:39414700 . . 0 41 hm5C_associated_SNPs_14716 0 0 1 0 0 exosome 1 0.500231644211335 0.860825061798096 0.999536711577329 hm5C_site_16435 DeepMRMD:0.860825061798096;iRNA_m5C:0.999536711577329 16436 chr22 39440149 39440149 1 + C T rs5750728 39440154 + 39440134 39440174 41 CCTTTGGCCAGTGCGCCCCACCACATGGGACAGCGCAGGTC CCTTTGGCCAGTGCGTCCCACCACATGGGACAGCGCAGGTC < 41bp 1 0.413905256274933 1 0.451896727085114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39440154 chr22:39440149 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_14717 0 0 0 0 1 Nucleus 1 0.500231644134051 1 0.999536711731898 hm5C_site_16436 DeepMRMD:1;iRNA_m5C:0.999536711731898 16437 chr22 39824067 39824067 1 + A G rs571848544 39824063 + 39824043 39824083 41 TACCCTGTGTCTGTGCCATACTCCAGCGCCCAGAGCACCAG TACCCTGTGTCTGTGCCATACTCCGGCGCCCAGAGCACCAG < 41bp 1 0.649326958589066 1 0.67633455991745 experiment 0.701346082821868 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39824063 chr22:39824067 nonsynonymous SNV 0.939 1 25 hm5C_associated_SNPs_14718 0 0 0 0 1 Cytosol 1 0.500231622724245 0.6473308801651 0.99953675455151 hm5C_site_16437 DeepMRMD:0.6473308801651;iRNA_m5C:0.99953675455151 16438 chr22 39826104 39826104 1 + C T rs118150487 39826113 + 39826093 39826133 41 CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA CTCTTCCGCTCTCGGCCCGCCCACTCGCTCCCGCCTGGCGA < 41bp 1 0.0837988798479917 1 0.174546778202057 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39826113 chr22:39826104 synonymous SNV . 0 12 hm5C_associated_SNPs_14719 0 0 1 0 1 Cytosol 1 0.500231643885041 1 0.999536712229919 hm5C_site_16438 DeepMRMD:1;iRNA_m5C:0.999536712229919 16439 chr22 39827535 39827535 1 + G A rs5757669 39827552 + 39827532 39827572 41 TCTGGGGTGCTTGGTCTCTGCGAAGTCAAAGGCCTGACAGC TCTAGGGTGCTTGGTCTCTGCGAAGTCAAAGGCCTGACAGC < 41bp 1 0.607411853821535 1 0.785885751247406 experiment 0.785176292356931 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAB1 ENSG00000100324 UTR3 Human protein_coding chr22:39827552 chr22:39827535 . . 0 4 hm5C_associated_SNPs_14720 0 0 1 0 0 Cytosol 1 0.500231644222686 0.428228497505188 0.999536711554629 hm5C_site_16439 DeepMRMD:0.428228497505188;iRNA_m5C:0.999536711554629 16440 chr22 39827553 39827553 1 + G A rs7949 39827552 + 39827532 39827572 41 TCTGGGGTGCTTGGTCTCTGCGAAGTCAAAGGCCTGACAGC TCTGGGGTGCTTGGTCTCTGCAAAGTCAAAGGCCTGACAGC < 41bp 1 0.578452232962902 1 0.715445041656494 experiment 0.843095534074196 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAB1 ENSG00000100324 UTR3 Human protein_coding chr22:39827552 chr22:39827553 . . 0 22 hm5C_associated_SNPs_14721 0 0 1 0 0 Cytosol 1 0.500231643803913 0.569109916687012 0.999536712392175 hm5C_site_16440 DeepMRMD:0.569109916687012;iRNA_m5C:0.999536712392175 16441 chr22 39827556 39827556 1 + G A rs34804656 39827552 + 39827532 39827572 41 TCTGGGGTGCTTGGTCTCTGCGAAGTCAAAGGCCTGACAGC TCTGGGGTGCTTGGTCTCTGCGAAATCAAAGGCCTGACAGC < 41bp 1 0.679007104597629 1 0.833876729011536 experiment 0.641985790804742 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAB1 ENSG00000100324 UTR3 Human protein_coding chr22:39827552 chr22:39827556 . . 0 25 hm5C_associated_SNPs_14722 0 0 1 0 0 Cytosol 1 0.50023164412227 0.332246541976928 0.99953671175546 hm5C_site_16441 DeepMRMD:0.332246541976928;iRNA_m5C:0.99953671175546 16442 chr22 39918057 39918057 1 + T A rs201312683 39918059 + 39918039 39918079 41 TTCCCCTTTCCCCAGGGGTCCTGTCCTCCACTCCAGATCAT TTCCCCTTTCCCCAGGGGACCTGTCCTCCACTCCAGATCAT < 41bp 1 0.207061104861766 1 0.0557126998901367 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ATF4 ENSG00000128272 CDS Human protein_coding chr22:39918059 chr22:39918057 nonsynonymous SNV 0.850 0 19 hm5C_associated_SNPs_14723 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16442 DeepMRMD:1;iRNA_m5C:0.999536712157815 16443 chr22 40662843 40662843 1 + A C rs201560227 40662825 + 40662805 40662845 41 CTGGAGCAGCGGGCCACAGCCTGCAACACCTAAGGATGAGG CTGGAGCAGCGGGCCACAGCCTGCAACACCTAAGGATGCGG < 41bp 1 0.478790433638215 1 0.880123257637024 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40662825 chr22:40662843 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_14724 0 0 0 0 0 Cytosol 1 0.500232919983367 0.239753484725952 0.999534160033265 hm5C_site_16443 DeepMRMD:0.239753484725952;iRNA_m5C:0.999534160033265 16444 chr22 40662843 40662843 1 + A C rs201560227 40662849 + 40662829 40662869 41 AACACCTAAGGATGAGGAACCCAGTGGTTGGGAAGAGCCAT AACACCTAAGGATGCGGAACCCAGTGGTTGGGAAGAGCCAT < 41bp 1 0.0964891397548868 1 0.389638453722 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40662849 chr22:40662843 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_14725 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16444 DeepMRMD:1;iRNA_m5C:0.999536712157815 16445 chr22 40666230 40666230 1 + T C rs140403953 40666231 + 40666211 40666251 41 GATGGATGATACAGGAGCATCGACCACAGGCTGGGGGAACA GATGGATGATACAGGAGCACCGACCACAGGCTGGGGGAACA < 41bp 1 0.106910173558365 1 0.207427561283112 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40666231 chr22:40666230 nonsynonymous SNV 0.996 0 20 hm5C_associated_SNPs_14726 0 0 0 0 1 Cytosol 1 0.500231566874075 1 0.999536866251851 hm5C_site_16445 DeepMRMD:1;iRNA_m5C:0.999536866251851 16446 chr22 40725594 40725594 1 + T G rs145786621 40725609 + 40725589 40725629 41 ATGCCTCTGAAGAAAGAGGCCATGAACCTACGAGGTGGTAA ATGCCGCTGAAGAAAGAGGCCATGAACCTACGAGGTGGTAA < 41bp 1 0.41884079034259 1 0.133430629968643 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6B ENSG00000100354 UTR3 Human protein_coding chr22:40725609 chr22:40725594 . . 0 6 hm5C_associated_SNPs_14727 0 0 0 0 0 Cytosol 1 0.50023164154795 1 0.999536716904101 hm5C_site_16446 DeepMRMD:1;iRNA_m5C:0.999536716904101 16447 chr22 40726350 40726350 1 + C T rs187141727 40726370 + 40726350 40726390 41 CGGCTACTGAAAGGTGTGTACAACTCCCAGAGGGGTGGCTG TGGCTACTGAAAGGTGTGTACAACTCCCAGAGGGGTGGCTG < 41bp 1 0.201417894786095 1 0.0522350072860718 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNRC6B ENSG00000100354 UTR3 Human protein_coding chr22:40726370 chr22:40726350 . . 0 1 hm5C_associated_SNPs_14728 0 0 1 0 0 Cytosol 1 0.500231643921102 1 0.999536712157796 hm5C_site_16447 DeepMRMD:1;iRNA_m5C:0.999536712157796 16448 chr22 40766641 40766641 1 + G C rs373242180 40766625 + 40766605 40766645 41 CGCTTAGGCGCCGCTGAGCGCTGACTGGGTGCGAGTGGGGA CGCTTAGGCGCCGCTGAGCGCTGACTGGGTGCGAGTCGGGA < 41bp 1 0.309037928317066 1 0.109442472457886 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SGSM3 ENSG00000100359 UTR5 Human protein_coding chr22:40766625 chr22:40766641 . . 0 37 hm5C_associated_SNPs_14729 0 0 1 0 1 Cytosol 1 0.500231643920915 1 0.99953671215817 hm5C_site_16448 DeepMRMD:1;iRNA_m5C:0.99953671215817 16449 chr22 40801787 40801787 1 + G C rs141654422 40801785 + 40801765 40801805 41 TCCAGACTGACCAGCGGGTCCTGCGCCACCTCATTGTCCAG TCCAGACTGACCAGCGGGTCCTCCGCCACCTCATTGTCCAG < 41bp 1 0.486022389478275 1 0.117133915424347 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40801785 chr22:40801787 synonymous SNV . 0 23 hm5C_associated_SNPs_14730 0 0 1 0 1 Cytosol 1 0.500233179690994 1 0.999533640618012 hm5C_site_16449 DeepMRMD:1;iRNA_m5C:0.999533640618012 16450 chr22 41323642 41323642 1 + G A rs138106052 41323631 + 41323611 41323651 41 GCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGG GCTCAAGCCTGTAATCCCAGCACTTTGGGAGACCGAGGTGG < 41bp 1 0.253048000072666 1 0.121593654155731 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XPNPEP3 ENSG00000196236 UTR3 Human protein_coding chr22:41323631 chr22:41323642 . . 0 32 hm5C_associated_SNPs_14731 0 0 0 0 0 Ribosome 1 0.500231643976665 1 0.999536712046671 hm5C_site_16450 DeepMRMD:1;iRNA_m5C:0.999536712046671 16451 chr22 41323642 41323642 1 + G A rs138106052 41323633 + 41323613 41323653 41 TCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGC TCAAGCCTGTAATCCCAGCACTTTGGGAGACCGAGGTGGGC < 41bp 1 0.188518573139733 1 0.219090104103088 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XPNPEP3 ENSG00000196236 UTR3 Human protein_coding chr22:41323633 chr22:41323642 . . 0 30 hm5C_associated_SNPs_14732 0 0 0 0 0 Ribosome 1 0.500231643962879 1 0.999536712074243 hm5C_site_16451 DeepMRMD:1;iRNA_m5C:0.999536712074243 16452 chr22 41323642 41323642 1 + G A rs138106052 41323653 + 41323633 41323673 41 CTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGAT CTTTGGGAGACCGAGGTGGGCGGATCACGAGGTCAGGAGAT < 41bp 1 0.684329635193489 1 0.6321821808815 experiment 0.631340729613021 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XPNPEP3 ENSG00000196236 UTR3 Human protein_coding chr22:41323653 chr22:41323642 . . 0 10 hm5C_associated_SNPs_14733 0 0 0 0 0 Ribosome 1 0.500231643842237 0.735635638237 0.999536712315527 hm5C_site_16452 DeepMRMD:0.735635638237;iRNA_m5C:0.999536712315527 16453 chr22 41323654 41323654 1 + G A rs576301411 41323653 + 41323633 41323673 41 CTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGAT CTTTGGGAGGCCGAGGTGGGCAGATCACGAGGTCAGGAGAT < 41bp 1 0.677609668937405 1 0.677289724349976 experiment 0.644780662125189 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XPNPEP3 ENSG00000196236 UTR3 Human protein_coding chr22:41323653 chr22:41323654 . . 0 22 hm5C_associated_SNPs_14734 0 0 0 0 0 Ribosome 1 0.500231645343187 0.645420551300048 0.999536709313626 hm5C_site_16453 DeepMRMD:0.645420551300048;iRNA_m5C:0.999536709313626 16454 chr22 41323655 41323655 1 + G A rs543684422 41323653 + 41323633 41323673 41 CTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGAT CTTTGGGAGGCCGAGGTGGGCGAATCACGAGGTCAGGAGAT < 41bp 1 0.581042652684791 1 0.606119632720947 experiment 0.837914694630418 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XPNPEP3 ENSG00000196236 UTR3 Human protein_coding chr22:41323653 chr22:41323655 . . 0 23 hm5C_associated_SNPs_14735 0 0 0 0 0 Ribosome 1 0.500231643980031 0.787760734558106 0.999536712039938 hm5C_site_16454 DeepMRMD:0.787760734558106;iRNA_m5C:0.999536712039938 16455 chr22 41794553 41794553 1 + T A rs373958647 41794536 + 41794516 41794556 41 AAATCATGAATGAGCTGGAACTTTGCAAGAATATTCATATT AAATCATGAATGAGCTGGAACTTTGCAAGAATATTCAAATT < 41bp 1 0.0968920515471573 1 0.130791991949081 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TEF ENSG00000167074 UTR3 Human protein_coding chr22:41794536 chr22:41794553 . . 0 38 hm5C_associated_SNPs_14736 0 0 0 2 0 cytosol 1 0.50023205900181 1 0.99953588199638 hm5C_site_16455 DeepMRMD:1;iRNA_m5C:0.99953588199638 16456 chr22 42276825 42276825 1 + G A rs2229440 42276812 + 42276792 42276832 41 CGCCTGGACCTGGCCTGCAGCCTCTCCTGGAACGTGATCCG CGCCTGGACCTGGCCTGCAGCCTCTCCTGGAACATGATCCG < 41bp 1 0.0546392141585261 1 0.0645447373390198 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42276812 chr22:42276825 nonsynonymous SNV 0.986 2 34 hm5C_associated_SNPs_14737 0 0 1 0 0 Ribosome 1 0.500231643920863 1 0.999536712158273 hm5C_site_16456 DeepMRMD:1;iRNA_m5C:0.999536712158273 16457 chr22 42280866 42280866 1 + G A rs372911487 42280873 + 42280853 42280893 41 TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT TCCTGCAGGATCCACCTGTTCCGATGTACACATGGCGTTGT < 41bp 1 0.268701263147844 1 0.12119260430336 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42280873 chr22:42280866 nonsynonymous SNV 0.891 1 14 hm5C_associated_SNPs_14738 0 0 1 0 1 Ribosome 1 0.500231649727723 1 0.999536700544554 hm5C_site_16457 DeepMRMD:1;iRNA_m5C:0.999536700544554 16458 chr22 42280889 42280889 1 + G A rs112435452 42280873 + 42280853 42280893 41 TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCATTGT < 41bp 1 0.293421927794687 1 0.170181632041931 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42280873 chr22:42280889 synonymous SNV . 0 37 hm5C_associated_SNPs_14739 0 0 1 0 1 Ribosome 1 0.500231680428013 1 0.999536639143975 hm5C_site_16458 DeepMRMD:1;iRNA_m5C:0.999536639143975 16459 chr22 42301554 42301554 1 + C T rs11538312 42301538 + 42301518 42301558 41 TCCTTCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGC TCCTTCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGTTGGC < 41bp 1 0.169838409047004 1 0.2718785405159 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42301538 chr22:42301554 synonymous SNV . 0 37 hm5C_associated_SNPs_14740 0 0 1 0 0 Ribosome 1 0.50023164392143 1 0.99953671215714 hm5C_site_16459 DeepMRMD:1;iRNA_m5C:0.99953671215714 16460 chr22 42301554 42301554 1 + C T rs11538312 42301539 + 42301519 42301559 41 CCTTCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGCC CCTTCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGTTGGCC < 41bp 1 0.519120448898257 1 0.662066221237183 experiment 0.961759102203486 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42301539 chr22:42301554 synonymous SNV . 0 36 hm5C_associated_SNPs_14741 0 0 1 0 0 Ribosome 1 0.500231643921092 0.675867557525634 0.999536712157815 hm5C_site_16460 DeepMRMD:0.675867557525634;iRNA_m5C:0.999536712157815 16461 chr22 42301554 42301554 1 + C T rs11538312 42301542 + 42301522 42301562 41 TCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGCCGAA TCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGTTGGCCGAA < 41bp 1 0.671711237638481 1 0.827378451824188 experiment 0.656577524723037 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42301542 chr22:42301554 synonymous SNV . 0 33 hm5C_associated_SNPs_14742 0 0 1 0 0 Ribosome 1 0.500231643921092 0.345243096351624 0.999536712157815 hm5C_site_16461 DeepMRMD:0.345243096351624;iRNA_m5C:0.999536712157815 16462 chr22 42301923 42301923 1 + A G rs147855211 42301931 + 42301911 42301951 41 CTTGATAGCAGCAGGGGGAGCTCCCAAGCTGCCAAGCCCCT CTTGATAGCAGCGGGGGGAGCTCCCAAGCTGCCAAGCCCCT < 41bp 1 0.413950709720252 1 0.322476714849472 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 UTR3 Human protein_coding chr22:42301931 chr22:42301923 . . 0 13 hm5C_associated_SNPs_14743 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16462 DeepMRMD:1;iRNA_m5C:0.999536712157815 16463 chr22 42301943 42301943 1 + C T rs2269664 42301931 + 42301911 42301951 41 CTTGATAGCAGCAGGGGGAGCTCCCAAGCTGCCAAGCCCCT CTTGATAGCAGCAGGGGGAGCTCCCAAGCTGCTAAGCCCCT < 41bp 1 0.350309749821683 1 0.381366640329361 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 UTR3 Human protein_coding chr22:42301931 chr22:42301943 . . 0 33 hm5C_associated_SNPs_14745 0 0 1 0 0 Ribosome 1 0.500231643921204 1 0.999536712157593 hm5C_site_16463 DeepMRMD:1;iRNA_m5C:0.999536712157593 16464 chr22 42301943 42301943 1 + C T rs2269664 42301933 + 42301913 42301953 41 TGATAGCAGCAGGGGGAGCTCCCAAGCTGCCAAGCCCCTGC TGATAGCAGCAGGGGGAGCTCCCAAGCTGCTAAGCCCCTGC < 41bp 1 0.69298138007452 1 0.576689004898071 experiment 0.614037239850959 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 UTR3 Human protein_coding chr22:42301933 chr22:42301943 . . 0 31 hm5C_associated_SNPs_14746 0 0 1 0 0 Ribosome 1 0.500231645655284 0.846621990203858 0.999536708689433 hm5C_site_16464 DeepMRMD:0.846621990203858;iRNA_m5C:0.999536708689433 16465 chr22 43011302 43011302 1 + C A rs148484665 43011293 + 43011273 43011313 41 AAAATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAA AAAATAACGATTCGGGGTGACGCCCGAATACTCACTGCTAA < 41bp 1 0.513238093831035 1 0.377944588661194 experiment 0.973523812337929 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011293 chr22:43011302 . . 0 30 hm5C_associated_SNPs_14748 0 0 1 5 0 unknown 1 0.500231643921157 1 0.999536712157685 hm5C_site_16465 DeepMRMD:1;iRNA_m5C:0.999536712157685 16466 chr22 43011302 43011302 1 + C A rs148484665 43011296 + 43011276 43011316 41 ATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAATGT ATAACGATTCGGGGTGACGCCCGAATACTCACTGCTAATGT < 41bp 1 0.561119152985994 1 0.380922317504883 experiment 0.877761694028012 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011296 chr22:43011302 . . 0 27 hm5C_associated_SNPs_14749 0 0 1 5 0 unknown 1 0.500231643921082 1 0.999536712157835 hm5C_site_16466 DeepMRMD:1;iRNA_m5C:0.999536712157835 16467 chr22 43011302 43011302 1 + C A rs148484665 43011305 + 43011285 43011325 41 CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAAT CGGGGTGACGCCCGAATACTCACTGCTAATGTGAGACGAAT < 41bp 1 0.475200469285442 1 0.125499695539474 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011305 chr22:43011302 . . 0 18 hm5C_associated_SNPs_14750 0 0 1 5 0 unknown 1 0.500231643921097 1 0.999536712157806 hm5C_site_16467 DeepMRMD:1;iRNA_m5C:0.999536712157806 16468 chr22 43011302 43011302 1 + C A rs148484665 43011307 + 43011287 43011327 41 GGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAATTT GGGTGACGCCCGAATACTCACTGCTAATGTGAGACGAATTT < 41bp 1 0.429224271717657 1 0.0933567583560944 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011307 chr22:43011302 . . 0 16 hm5C_associated_SNPs_14751 0 0 1 5 0 unknown 1 0.50023164393367 1 0.999536712132661 hm5C_site_16468 DeepMRMD:1;iRNA_m5C:0.999536712132661 16469 chr22 43011303 43011303 1 + C G rs549604353 43011293 + 43011273 43011313 41 AAAATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAA AAAATAACGATTCGGGGTGACGCCCGAATCGTCACTGCTAA < 41bp 1 0.510779420065223 1 0.32923036813736 experiment 0.978441159869554 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011293 chr22:43011303 . . 0 31 hm5C_associated_SNPs_14752 0 0 1 5 0 unknown 1 0.500231643925687 1 0.999536712148626 hm5C_site_16469 DeepMRMD:1;iRNA_m5C:0.999536712148626 16470 chr22 43011303 43011303 1 + C G rs549604353 43011296 + 43011276 43011316 41 ATAACGATTCGGGGTGACGCCCGAATCCTCACTGCTAATGT ATAACGATTCGGGGTGACGCCCGAATCGTCACTGCTAATGT < 41bp 1 0.54892764868435 1 0.49511057138443 experiment 0.902144702631299 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011296 chr22:43011303 . . 0 28 hm5C_associated_SNPs_14753 0 0 1 5 0 unknown 1 0.50023164392357 1 0.999536712152861 hm5C_site_16470 DeepMRMD:1;iRNA_m5C:0.999536712152861 16471 chr22 43011303 43011303 1 + C G rs549604353 43011305 + 43011285 43011325 41 CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAAT CGGGGTGACGCCCGAATCGTCACTGCTAATGTGAGACGAAT < 41bp 1 0.343741952808188 1 0.209493964910507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011305 chr22:43011303 . . 0 19 hm5C_associated_SNPs_14754 0 0 1 5 0 unknown 1 0.500231644020408 1 0.999536711959184 hm5C_site_16471 DeepMRMD:1;iRNA_m5C:0.999536711959184 16472 chr22 43011303 43011303 1 + C G rs549604353 43011307 + 43011287 43011327 41 GGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAATTT GGGTGACGCCCGAATCGTCACTGCTAATGTGAGACGAATTT < 41bp 1 0.379579903049497 1 0.0843262076377869 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011307 chr22:43011303 . . 0 17 hm5C_associated_SNPs_14755 0 0 1 5 0 unknown 1 0.500231892972824 1 0.999536214054352 hm5C_site_16472 DeepMRMD:1;iRNA_m5C:0.999536214054352 16473 chr22 43011321 43011321 1 + C A rs180887630 43011305 + 43011285 43011325 41 CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAAT CGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGAAGAAT < 41bp 1 0.360289246337767 1 0.15460005402565 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011305 chr22:43011321 . . 0 37 hm5C_associated_SNPs_14756 0 0 1 0 0 unknown 1 0.500231676634144 1 0.999536646731712 hm5C_site_16473 DeepMRMD:1;iRNA_m5C:0.999536646731712 16474 chr22 43011321 43011321 1 + C A rs180887630 43011307 + 43011287 43011327 41 GGGTGACGCCCGAATCCTCACTGCTAATGTGAGACGAATTT GGGTGACGCCCGAATCCTCACTGCTAATGTGAGAAGAATTT < 41bp 1 0.356640721093936 1 0.0864058136940002 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011307 chr22:43011321 . . 0 35 hm5C_associated_SNPs_14757 0 0 1 0 0 unknown 1 0.500231662158378 1 0.999536675683245 hm5C_site_16474 DeepMRMD:1;iRNA_m5C:0.999536675683245 16475 chr22 43011346 43011346 1 + C A rs59723509 43011359 + 43011339 43011379 41 AAGGTCGCCCTCAAGGTGACCCGCCTACTTTGCGGGATGCC AAGGTCGACCTCAAGGTGACCCGCCTACTTTGCGGGATGCC < 41bp 1 0.118334365326883 1 0.0747071206569672 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011359 chr22:43011346 . . 0 8 hm5C_associated_SNPs_14758 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16475 DeepMRMD:1;iRNA_m5C:0.999536712157815 16476 chr22 43011351 43011351 1 + A G rs79126439 43011359 + 43011339 43011379 41 AAGGTCGCCCTCAAGGTGACCCGCCTACTTTGCGGGATGCC AAGGTCGCCCTCGAGGTGACCCGCCTACTTTGCGGGATGCC < 41bp 1 0.140244793757854 1 0.104239046573639 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011359 chr22:43011351 . . 0 13 hm5C_associated_SNPs_14759 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157817 hm5C_site_16476 DeepMRMD:1;iRNA_m5C:0.999536712157817 16477 chr22 43011353 43011353 1 + G A rs542465984 43011359 + 43011339 43011379 41 AAGGTCGCCCTCAAGGTGACCCGCCTACTTTGCGGGATGCC AAGGTCGCCCTCAAAGTGACCCGCCTACTTTGCGGGATGCC < 41bp 1 0.10111999585367 1 0.0647645592689514 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011359 chr22:43011353 . . 0 15 hm5C_associated_SNPs_14760 0 0 1 0 0 unknown 1 0.500231643913116 1 0.999536712173769 hm5C_site_16477 DeepMRMD:1;iRNA_m5C:0.999536712173769 16478 chr22 43011389 43011389 1 + C T rs146703104 43011378 + 43011358 43011398 41 CCCGCCTACTTTGCGGGATGCCTGGGAGTTGCGATCTGCCC CCCGCCTACTTTGCGGGATGCCTGGGAGTTGTGATCTGCCC < 41bp 1 0.400855709339223 1 0.1701720058918 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011378 chr22:43011389 . . 0 32 hm5C_associated_SNPs_14761 0 0 1 0 0 unknown 1 0.50023156353344 1 0.99953687293312 hm5C_site_16478 DeepMRMD:1;iRNA_m5C:0.99953687293312 16479 chr22 43011389 43011389 1 + C T rs146703104 43011393 + 43011373 43011413 41 GGATGCCTGGGAGTTGCGATCTGCCCGACCTTATTCACGCC GGATGCCTGGGAGTTGTGATCTGCCCGACCTTATTCACGCC < 41bp 1 0.638273799552375 1 0.427165031433105 experiment 0.72345240089525 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011393 chr22:43011389 . . 0 17 hm5C_associated_SNPs_14762 0 0 1 0 0 unknown 1 0.500231643811247 1 0.999536712377507 hm5C_site_16479 DeepMRMD:1;iRNA_m5C:0.999536712377507 16480 chr22 43011389 43011389 1 + C T rs146703104 43011396 + 43011376 43011416 41 TGCCTGGGAGTTGCGATCTGCCCGACCTTATTCACGCCTAA TGCCTGGGAGTTGTGATCTGCCCGACCTTATTCACGCCTAA < 41bp 1 0.627858355457314 1 0.480824261903763 experiment 0.744283289085373 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011396 chr22:43011389 . . 0 14 hm5C_associated_SNPs_14763 0 0 1 0 0 unknown 1 0.500231643920966 1 0.999536712158069 hm5C_site_16480 DeepMRMD:1;iRNA_m5C:0.999536712158069 16481 chr22 43011389 43011389 1 + C T rs146703104 43011397 + 43011377 43011417 41 GCCTGGGAGTTGCGATCTGCCCGACCTTATTCACGCCTAAA GCCTGGGAGTTGTGATCTGCCCGACCTTATTCACGCCTAAA < 41bp 1 0.239969432427472 1 0.0956319868564606 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011397 chr22:43011389 . . 0 13 hm5C_associated_SNPs_14764 0 0 1 0 0 unknown 1 0.500231643940509 1 0.999536712118983 hm5C_site_16481 DeepMRMD:1;iRNA_m5C:0.999536712118983 16482 chr22 43011389 43011389 1 + C T rs146703104 43011398 + 43011378 43011418 41 CCTGGGAGTTGCGATCTGCCCGACCTTATTCACGCCTAAAA CCTGGGAGTTGTGATCTGCCCGACCTTATTCACGCCTAAAA < 41bp 1 0.534686151811682 1 0.138331264257431 experiment 0.930627696376637 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011398 chr22:43011389 . . 0 12 hm5C_associated_SNPs_14765 0 0 1 0 0 unknown 1 0.500231643921099 1 0.999536712157802 hm5C_site_16482 DeepMRMD:1;iRNA_m5C:0.999536712157802 16483 chr22 43558910 43558910 1 + G A rs142042960 43558927 + 43558907 43558947 41 CCTGGCCTGGCTGGCCTTCACGACCACACTCAACTACTGCG CCTAGCCTGGCTGGCCTTCACGACCACACTCAACTACTGCG < 41bp 1 0.586830024272757 1 0.118652880191803 experiment 0.826339951454486 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPO ENSG00000100300 CDS Human protein_coding chr22:43558927 chr22:43558910 nonsynonymous SNV . 0 4 hm5C_associated_SNPs_14766 0 0 1 0 0 Ribosome 1 0.500231643921218 1 0.999536712157565 hm5C_site_16483 DeepMRMD:1;iRNA_m5C:0.999536712157565 16484 chr22 43558926 43558926 1 + A G rs6971 43558927 + 43558907 43558947 41 CCTGGCCTGGCTGGCCTTCACGACCACACTCAACTACTGCG CCTGGCCTGGCTGGCCTTCGCGACCACACTCAACTACTGCG < 41bp 1 0.558063652089833 1 0.376720160245895 experiment 0.883872695820334 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPO ENSG00000100300 CDS Human protein_coding chr22:43558927 chr22:43558926 nonsynonymous SNV 0.040 0 20 hm5C_associated_SNPs_14767 0 0 1 0 0 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_16484 DeepMRMD:1;iRNA_m5C:0.999536712157808 16485 chr22 43559152 43559152 1 + C G rs373324032 43559164 + 43559144 43559184 41 CCTGAGCCCCCACCCGGGAGCAGTGTCCTGTGCTTTCTGCA CCTGAGCCGCCACCCGGGAGCAGTGTCCTGTGCTTTCTGCA < 41bp 1 0.518226815100285 1 0.109333753585815 experiment 0.963546369799429 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TSPO ENSG00000100300 UTR3 Human protein_coding chr22:43559164 chr22:43559152 . . 0 9 hm5C_associated_SNPs_14768 0 0 1 0 0 Ribosome 1 0.50023164462037 1 0.99953671075926 hm5C_site_16485 DeepMRMD:1;iRNA_m5C:0.99953671075926 16486 chr22 44332974 44332974 1 + A C rs78730442 44332984 + 44332964 44333004 41 CATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC CATCCTCAGACGGGATGGATCCTGAGGTCGCCATGCCCAGC < 41bp 1 0.625890002541243 1 0.168259799480438 experiment 0.748219994917514 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332984 chr22:44332974 nonsynonymous SNV 0.000 0 11 hm5C_associated_SNPs_14769 0 0 1 0 1 cytosol 1 0.50023164803238 1 0.999536703935241 hm5C_site_16486 DeepMRMD:1;iRNA_m5C:0.999536703935241 16487 chr22 44342515 44342515 1 + G A rs554741738 44342508 + 44342488 44342528 41 GGAAATGACACCAGGAAGCCCAGTGCAGAGGGTCCCTTACT GGAAATGACACCAGGAAGCCCAGTGCAAAGGGTCCCTTACT < 41bp 1 0.546288819223293 1 0.858416199684143 experiment 0.907422361553414 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PNPLA3 ENSG00000100344 UTR3 Human protein_coding chr22:44342508 chr22:44342515 . . 0 28 hm5C_associated_SNPs_14770 0 0 1 1 0 cytosol 1 0.500231643921092 0.283167600631714 0.999536712157815 hm5C_site_16487 DeepMRMD:0.283167600631714;iRNA_m5C:0.999536712157815 16488 chr22 44368122 44368122 1 + A G rs3761472 44368123 + 44368103 44368143 41 TTTTTTTATTTAGGTGATGACGCACTTCCAAATGGGTTAGA TTTTTTTATTTAGGTGATGGCGCACTTCCAAATGGGTTAGA < 41bp 1 0.153855776742277 1 0.280539929866791 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44368123 chr22:44368122 nonsynonymous SNV 0.947 1 20 hm5C_associated_SNPs_14771 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_16488 DeepMRMD:1;iRNA_m5C:0.999536712157815 16489 chr22 44379822 44379822 1 + T A rs10452 44379837 + 44379817 44379857 41 TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA TACCTAGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA < 41bp 1 0.257224795239533 1 0.382186859846115 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379837 chr22:44379822 synonymous SNV . 0 6 hm5C_associated_SNPs_14772 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16489 DeepMRMD:1;iRNA_m5C:0.999536712157815 16490 chr22 44379838 44379838 1 + A G rs8418 44379837 + 44379817 44379857 41 TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA TACCTTGGGGGACCCACAAGCGTCCGCGGATTCAGCATGCA < 41bp 1 0.290353330030933 1 0.526887118816376 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379837 chr22:44379838 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_14773 0 0 1 0 2 Cytosol 1 0.500231643921092 0.946225762367248 0.999536712157815 hm5C_site_16490 DeepMRMD:0.946225762367248;iRNA_m5C:0.999536712157815 16491 chr22 44420203 44420203 1 + G A rs556471411 44420198 + 44420178 44420218 41 CTCCACACGCGCTGCGCCCGCCGCCGGCCCCACGCGCGGCC CTCCACACGCGCTGCGCCCGCCGCCAGCCCCACGCGCGGCC < 41bp 1 0.30128305321914 1 0.479907155036926 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PARVB ENSG00000188677 UTR5 Human protein_coding chr22:44420198 chr22:44420203 . . 0 26 hm5C_associated_SNPs_14774 0 0 1 0 0 Ribosome 1 0.500231643932604 1 0.999536712134792 hm5C_site_16491 DeepMRMD:1;iRNA_m5C:0.999536712134792 16492 chr22 44420207 44420207 1 + C G rs576304296 44420198 + 44420178 44420218 41 CTCCACACGCGCTGCGCCCGCCGCCGGCCCCACGCGCGGCC CTCCACACGCGCTGCGCCCGCCGCCGGCCGCACGCGCGGCC < 41bp 1 0.380833158216376 1 0.660799860954285 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PARVB ENSG00000188677 UTR5 Human protein_coding chr22:44420198 chr22:44420207 . . 0 30 hm5C_associated_SNPs_14775 0 0 1 0 0 Ribosome 1 0.500231643921147 0.67840027809143 0.999536712157706 hm5C_site_16492 DeepMRMD:0.67840027809143;iRNA_m5C:0.999536712157706 16493 chr22 44547379 44547379 1 + T C rs113622568 44547390 + 44547370 44547410 41 TCACTTTTGTGAACAAGCACCTGAACAAGCTGAATTTGGAG TCACTTTTGCGAACAAGCACCTGAACAAGCTGAATTTGGAG < 41bp 1 0.246428950110806 1 0.400147914886475 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARVB ENSG00000188677 CDS Human protein_coding chr22:44547390 chr22:44547379 nonsynonymous SNV 0.998 2 10 hm5C_associated_SNPs_14776 0 0 0 0 2 Ribosome 1 0.500230807596955 1 0.999538384806091 hm5C_site_16493 DeepMRMD:1;iRNA_m5C:0.999538384806091 16494 chr22 45126857 45126857 1 + C T rs554434356 45126863 + 45126843 45126883 41 CTCAGCTGGGTCCCCAGTGCCCAGCATCAGCGCCAGCACAC CTCAGCTGGGTCCCTAGTGCCCAGCATCAGCGCCAGCACAC < 41bp 1 0.0868906441001168 1 0.0993631184101105 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRR5;PRR5-ARHGAP8 ENSG00000186654 CDS Human protein_coding chr22:45126863 chr22:45126857 unknown . 0 15 hm5C_associated_SNPs_14777 0 0 1 0 0 unknown 1 0.50021034875636 1 0.99957930248728 hm5C_site_16494 DeepMRMD:1;iRNA_m5C:0.99957930248728 16495 chr22 45127435 45127435 1 + G T rs2269572 45127451 + 45127431 45127471 41 GTGGGCCCAGGGCCATAGAACAGCTGAGCTGTGGAGCTGGA GTGGTCCCAGGGCCATAGAACAGCTGAGCTGTGGAGCTGGA < 41bp 1 0.165292891162705 1 0.391485631465912 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRR5;PRR5-ARHGAP8 ENSG00000186654;ENSG00000241484;ENSG00000248405 intronic Human other chr22:45127451 chr22:45127435 . . 0 5 hm5C_associated_SNPs_14778 0 0 1 0 0 unknown 1 0.500231676454446 1 0.999536647091107 hm5C_site_16495 DeepMRMD:1;iRNA_m5C:0.999536647091107 16496 chr22 45579367 45579367 1 + G A rs146749329 45579387 + 45579367 45579407 41 GACACAGCTTTTGGTGCGGGCAGACACCAATTTAGGTGGGT AACACAGCTTTTGGTGCGGGCAGACACCAATTTAGGTGGGT < 41bp 1 0.113458199489335 1 0.412487030029297 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP50 ENSG00000093000 CDS Human protein_coding chr22:45579387 chr22:45579367 synonymous SNV . 0 1 hm5C_associated_SNPs_14782 0 0 0 0 2 Ribosome 1 0.50023200202549 1 0.999535995949019 hm5C_site_16496 DeepMRMD:1;iRNA_m5C:0.999535995949019 16497 chr22 45579396 45579396 1 + A G rs373726931 45579387 + 45579367 45579407 41 GACACAGCTTTTGGTGCGGGCAGACACCAATTTAGGTGGGT GACACAGCTTTTGGTGCGGGCAGACACCAGTTTAGGTGGGT < 41bp 1 0.111320855245117 1 0.405493766069412 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP50 ENSG00000093000 CDS Human protein_coding chr22:45579387 chr22:45579396 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_14783 0 0 1 0 1 Ribosome 1 0.500231644392663 1 0.999536711214674 hm5C_site_16497 DeepMRMD:1;iRNA_m5C:0.999536711214674 16498 chr22 45818230 45818230 1 + T A rs145976708 45818239 + 45818219 45818259 41 CCTCCAGAAGCTGGAAAGCACCACCAGAAAGGCAGTTTGTG CCTCCAGAAGCAGGAAAGCACCACCAGAAAGGCAGTTTGTG < 41bp 1 0.103202041790074 1 0.0489808917045593 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45818239 chr22:45818230 nonsynonymous SNV 0.274 0 12 hm5C_associated_SNPs_14784 0 0 1 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16498 DeepMRMD:1;iRNA_m5C:0.999536712157815 16499 chr22 45898756 45898756 1 + G A rs534860827 45898771 + 45898751 45898791 41 CCCTGGCCCAGCGTTGGCTGCCGAGGCTCGGCCGGAGCGTG CCCTGACCCAGCGTTGGCTGCCGAGGCTCGGCCGGAGCGTG < 41bp 1 0.484837185131636 1 0.624591708183289 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FBLN1 ENSG00000077942 UTR5 Human protein_coding chr22:45898771 chr22:45898756 . . 0 6 hm5C_associated_SNPs_14785 0 0 0 0 0 cytosol 1 0.500231644028273 0.750816583633422 0.999536711943454 hm5C_site_16499 DeepMRMD:0.750816583633422;iRNA_m5C:0.999536711943454 16500 chr22 46067896 46067896 1 + C T rs563463705 46067913 + 46067893 46067933 41 CTCCTCGCCTTCCTCCTCCTCGTCAGGCTCGACCCAGCTGT CTCTTCGCCTTCCTCCTCCTCGTCAGGCTCGACCCAGCTGT < 41bp 1 0.680524277064704 1 0.371097803115845 experiment 0.638951445870592 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATXN10 ENSG00000130638 UTR5 Human protein_coding chr22:46067913 chr22:46067896 . . 0 4 hm5C_associated_SNPs_14786 0 0 1 0 0 Cytosol 1 0.500230637851622 1 0.999538724296755 hm5C_site_16500 DeepMRMD:1;iRNA_m5C:0.999538724296755 16501 chr22 46067937 46067937 1 + C T rs565770838 46067951 + 46067931 46067971 41 TGTGAGCGGCAAGATGGCGGCGCCCAGGCCGCCGCCTGCCA TGTGAGTGGCAAGATGGCGGCGCCCAGGCCGCCGCCTGCCA < 41bp 1 0.592981435931633 1 0.323338329792023 experiment 0.814037128136733 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ATXN10 ENSG00000130638 UTR5 Human protein_coding chr22:46067951 chr22:46067937 . . 0 7 hm5C_associated_SNPs_14787 0 0 1 0 0 Cytosol 1 0.500233782922237 1 0.999532434155526 hm5C_site_16501 DeepMRMD:1;iRNA_m5C:0.999532434155526 16502 chr22 46499120 46499120 1 + G A rs9616125 46499106 + 46499086 46499126 41 TCTGGATCGGCGGTCCCCATCAGAGGCCTGGGCTGAGTCCT TCTGGATCGGCGGTCCCCATCAGAGGCCTGGGCTAAGTCCT < 41bp 1 0.639499940315322 1 0.843213260173798 experiment 0.721000119369356 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MIRLET7BHG ENSG00000197182 CDS Human lincRNA chr22:46499106 chr22:46499120 synonymous SNV . 0 35 hm5C_associated_SNPs_14788 0 0 0 0 2 Nucleus 1 0.500231643920861 0.313573479652404 0.999536712158278 hm5C_site_16502 DeepMRMD:0.313573479652404;iRNA_m5C:0.999536712158278 16503 chr22 46681141 46681141 1 + G A rs35883013 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCAAATATGAGGCCGCGCTGAC < 41bp 1 0.0899590740397858 1 0.15700426697731 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681141 nonsynonymous SNV 0.044 1 22 hm5C_associated_SNPs_14789 0 0 1 0 2 Ribosome 1 0.500231643899356 1 0.999536712201287 hm5C_site_16503 DeepMRMD:1;iRNA_m5C:0.999536712201287 16504 chr22 46712110 46712110 1 + G A rs573781773 46712102 + 46712082 46712122 41 TTTCTGAGCTGGCAGCGGAGCAGCTCACGGCACCCCCCTCA TTTCTGAGCTGGCAGCGGAGCAGCTCACAGCACCCCCCTCA < 41bp 1 0.599131993180588 1 0.490701794624329 experiment 0.801736013638825 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46712102 chr22:46712110 synonymous SNV . 0 29 hm5C_associated_SNPs_14790 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_16504 DeepMRMD:1;iRNA_m5C:0.999536712157815 16505 chr22 46726376 46726376 1 + T A rs569790660 46726360 + 46726340 46726380 41 ACTGCACTCCAGCCTGGGCACCAATGTGAGAACCTGTCTTG ACTGCACTCCAGCCTGGGCACCAATGTGAGAACCTGACTTG < 41bp 1 0.256971991463974 1 0.265496909618378 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GTSE1 ENSG00000075218 UTR3 Human protein_coding chr22:46726360 chr22:46726376 . . 0 37 hm5C_associated_SNPs_14792 0 0 1 0 0 Ribosome 1 0.500231641890945 1 0.999536716218109 hm5C_site_16505 DeepMRMD:1;iRNA_m5C:0.999536716218109 16506 chr22 46733831 46733831 1 + G A rs55952751 46733839 + 46733819 46733859 41 GAGTATTGGAATGATGTGTTCAGGTGAGTGCGGGTCACAGC GAGTATTGGAATAATGTGTTCAGGTGAGTGCGGGTCACAGC < 41bp 1 0.678637496492344 1 0.75324273109436 experiment 0.642725007015312 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRMU ENSG00000100416 CDS Human protein_coding chr22:46733839 chr22:46733831 nonsynonymous SNV 0.846 0 13 hm5C_associated_SNPs_14793 1 0 1 0 1 Ribosome 1 0.500232123113142 0.49351453781128 0.999535753773717 hm5C_site_16506 DeepMRMD:0.49351453781128;iRNA_m5C:0.999535753773717 not specified not specified 16507 chr22 50356850 50356850 1 + C G rs1801645 50356835 + 50356815 50356855 41 TGGCCAGACCTGGGACGCCCCCAGACCCTGACTTTCTCCTG TGGCCAGACCTGGGACGCCCCCAGACCCTGACTTTGTCCTG < 41bp 1 0.63487865407603 1 0.130755990743637 experiment 0.730242691847939 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50356835 chr22:50356850 . . 0 36 hm5C_associated_SNPs_14794 0 0 1 0 0 Ribosome 1 0.500231680921377 1 0.999536638157246 hm5C_site_16507 DeepMRMD:1;iRNA_m5C:0.999536638157246 16508 chr22 50357408 50357408 1 + G T rs369513773 50357419 + 50357399 50357439 41 GTGCCTGGCGTCTGTCCCGGCCCCGCCTGTCAGAAGATGAA GTGCCTGGCTTCTGTCCCGGCCCCGCCTGTCAGAAGATGAA < 41bp 1 0.230718771435556 1 0.102987468242645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357419 chr22:50357408 . . 0 10 hm5C_associated_SNPs_14795 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16508 DeepMRMD:1;iRNA_m5C:0.999536712157815 16509 chr22 50357408 50357408 1 + G T rs369513773 50357421 + 50357401 50357441 41 GCCTGGCGTCTGTCCCGGCCCCGCCTGTCAGAAGATGAACA GCCTGGCTTCTGTCCCGGCCCCGCCTGTCAGAAGATGAACA < 41bp 1 0.102715079618777 1 0.0536040663719177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357421 chr22:50357408 . . 0 8 hm5C_associated_SNPs_14796 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16509 DeepMRMD:1;iRNA_m5C:0.999536712157815 16510 chr22 50357408 50357408 1 + G T rs369513773 50357424 + 50357404 50357444 41 TGGCGTCTGTCCCGGCCCCGCCTGTCAGAAGATGAACATGT TGGCTTCTGTCCCGGCCCCGCCTGTCAGAAGATGAACATGT < 41bp 1 0.133187063844872 1 0.0274135768413544 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357424 chr22:50357408 . . 0 5 hm5C_associated_SNPs_14797 0 0 1 0 0 Ribosome 1 0.500252327757401 1 0.999495344485198 hm5C_site_16510 DeepMRMD:1;iRNA_m5C:0.999495344485198 16511 chr22 50357416 50357416 1 + C A rs13811 50357419 + 50357399 50357439 41 GTGCCTGGCGTCTGTCCCGGCCCCGCCTGTCAGAAGATGAA GTGCCTGGCGTCTGTCCAGGCCCCGCCTGTCAGAAGATGAA < 41bp 1 0.309595384904958 1 0.142034649848938 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357419 chr22:50357416 . . 0 18 hm5C_associated_SNPs_14798 0 0 1 0 0 Ribosome 1 0.500231693095467 1 0.999536613809066 hm5C_site_16511 DeepMRMD:1;iRNA_m5C:0.999536613809066 16512 chr22 50357416 50357416 1 + C A rs13811 50357421 + 50357401 50357441 41 GCCTGGCGTCTGTCCCGGCCCCGCCTGTCAGAAGATGAACA GCCTGGCGTCTGTCCAGGCCCCGCCTGTCAGAAGATGAACA < 41bp 1 0.127152630100507 1 0.0399906933307648 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357421 chr22:50357416 . . 0 16 hm5C_associated_SNPs_14799 0 0 1 0 0 Ribosome 1 0.500231644001696 1 0.999536711996608 hm5C_site_16512 DeepMRMD:1;iRNA_m5C:0.999536711996608 16513 chr22 50357416 50357416 1 + C A rs13811 50357424 + 50357404 50357444 41 TGGCGTCTGTCCCGGCCCCGCCTGTCAGAAGATGAACATGT TGGCGTCTGTCCAGGCCCCGCCTGTCAGAAGATGAACATGT < 41bp 1 0.155913256170452 1 0.0473378002643585 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357424 chr22:50357416 . . 0 13 hm5C_associated_SNPs_14800 0 0 1 0 0 Ribosome 1 0.500229684055808 1 0.999540631888385 hm5C_site_16513 DeepMRMD:1;iRNA_m5C:0.999540631888385 16514 chr22 50357441 50357441 1 + A C rs563722911 50357421 + 50357401 50357441 41 GCCTGGCGTCTGTCCCGGCCCCGCCTGTCAGAAGATGAACA GCCTGGCGTCTGTCCCGGCCCCGCCTGTCAGAAGATGAACC < 41bp 1 0.110733166462839 1 0.0705606639385223 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357421 chr22:50357441 . . 0 41 hm5C_associated_SNPs_14801 0 0 1 0 0 Ribosome 1 0.500231643920934 1 0.999536712158133 hm5C_site_16514 DeepMRMD:1;iRNA_m5C:0.999536712158133 16515 chr22 50357441 50357441 1 + A C rs563722911 50357424 + 50357404 50357444 41 TGGCGTCTGTCCCGGCCCCGCCTGTCAGAAGATGAACATGT TGGCGTCTGTCCCGGCCCCGCCTGTCAGAAGATGAACCTGT < 41bp 1 0.176300420455478 1 0.0550456345081329 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357424 chr22:50357441 . . 0 38 hm5C_associated_SNPs_14802 0 0 1 0 0 Ribosome 1 0.500226880560184 1 0.999546238879631 hm5C_site_16515 DeepMRMD:1;iRNA_m5C:0.999546238879631 16516 chr22 50357657 50357657 1 + A G rs150927168 50357675 + 50357655 50357695 41 AAAGTGAGATGTCTGGAGATCATATTTTTTTATACAGGTAT AAGGTGAGATGTCTGGAGATCATATTTTTTTATACAGGTAT < 41bp 1 0.0805314441034175 1 0.289348572492599 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357675 chr22:50357657 . . 0 3 hm5C_associated_SNPs_14803 0 0 1 2 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16516 DeepMRMD:1;iRNA_m5C:0.999536712157815 16517 chr22 50357667 50357667 1 + C G rs189822817 50357675 + 50357655 50357695 41 AAAGTGAGATGTCTGGAGATCATATTTTTTTATACAGGTAT AAAGTGAGATGTGTGGAGATCATATTTTTTTATACAGGTAT < 41bp 1 0.0910829093990562 1 0.269570887088776 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PIM3 ENSG00000198355 UTR3 Human protein_coding chr22:50357675 chr22:50357667 . . 0 13 hm5C_associated_SNPs_14804 0 0 1 2 0 Ribosome 1 0.500231643919958 1 0.999536712160084 hm5C_site_16517 DeepMRMD:1;iRNA_m5C:0.999536712160084 16518 chr22 50646816 50646816 1 + G A rs142043755 50646817 + 50646797 50646837 41 TGTGGTGAGGCGAGATCGCGCCACTGCACTCCAGCCTGGAC TGTGGTGAGGCGAGATCGCACCACTGCACTCCAGCCTGGAC < 41bp 1 0.0558931047181181 1 0.101692914962769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SELENOO ENSG00000073169 intronic Human protein_coding chr22:50646817 chr22:50646816 . . 0 20 hm5C_associated_SNPs_14805 0 0 0 0 0 Nucleus 1 0.50023164598079 1 0.99953670803842 hm5C_site_16518 DeepMRMD:1;iRNA_m5C:0.99953670803842 16519 chr22 50655822 50655822 1 + C T rs2272853 50655841 + 50655821 50655861 41 CCTGGAGTCTCCCGAGGCCCCCATGTGCTGCTGAGTGGCCA CTTGGAGTCTCCCGAGGCCCCCATGTGCTGCTGAGTGGCCA < 41bp 1 0.268329374963374 1 0.172829031944275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SELENOO ENSG00000073169 UTR3 Human protein_coding chr22:50655841 chr22:50655822 . . 0 2 hm5C_associated_SNPs_14806 0 0 1 0 0 Nucleus 1 0.500231647255825 1 0.999536705488351 hm5C_site_16519 DeepMRMD:1;iRNA_m5C:0.999536705488351 16520 chr22 50861956 50861956 1 + C T rs373613910 50861963 + 50861943 50861983 41 CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC CCCGTCTGCATGGTGCCCGCCTCATGGCAGCACTGCTGCAC < 41bp 1 0.460314488983343 1 0.270027339458466 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50861963 chr22:50861956 synonymous SNV . 0 14 hm5C_associated_SNPs_14807 0 0 1 0 2 Ribosome 1 0.500231643946343 1 0.999536712107314 hm5C_site_16520 DeepMRMD:1;iRNA_m5C:0.999536712107314 16521 chr22 50877166 50877166 1 + G A rs4824131 50877165 + 50877145 50877185 41 GGCCCCCGGGAAGAAGGAAGCGCCCCCTGTGGAGGGTGACT GGCCCCCGGGAAGAAGGAAGCACCCCCTGTGGAGGGTGACT < 41bp 1 0.263534839008836 1 0.184262275695801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50877165 chr22:50877166 synonymous SNV . 0 22 hm5C_associated_SNPs_14808 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_16521 DeepMRMD:1;iRNA_m5C:0.999536712157818 16522 chr22 50882469 50882469 1 + G A rs200092795 50882468 + 50882448 50882488 41 CTCTTCTGCACTGGCCGTGGCGGTCCCCCTAGGGCCCATCA CTCTTCTGCACTGGCCGTGGCAGTCCCCCTAGGGCCCATCA < 41bp 1 0.179694179682947 1 0.173076868057251 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50882468 chr22:50882469 synonymous SNV . 0 22 hm5C_associated_SNPs_14810 0 0 1 0 1 Ribosome 1 0.500231643508997 1 0.999536712982007 hm5C_site_16522 DeepMRMD:1;iRNA_m5C:0.999536712982007 16523 chr22 50882483 50882483 1 + C A rs573472469 50882468 + 50882448 50882488 41 CTCTTCTGCACTGGCCGTGGCGGTCCCCCTAGGGCCCATCA CTCTTCTGCACTGGCCGTGGCGGTCCCCCTAGGGCACATCA < 41bp 1 0.187588156156831 1 0.215956449508667 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50882468 chr22:50882483 nonsynonymous SNV 0.003 3 36 hm5C_associated_SNPs_14811 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16523 DeepMRMD:1;iRNA_m5C:0.999536712157815 16524 chr22 50958056 50958056 1 + C T rs8141871 50958060 + 50958040 50958080 41 CCAAGGCGCCTCTCTGCAGTCGGGCTGGTAGGAGGGAGTGT CCAAGGCGCCTCTCTGTAGTCGGGCTGGTAGGAGGGAGTGT < 41bp 1 0.582225911490991 1 0.882591485977173 experiment 0.835548177018018 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCAPH2 ENSG00000025770 UTR3 Human protein_coding chr22:50958060 chr22:50958056 . . 0 17 hm5C_associated_SNPs_14812 0 0 1 0 0 Cytosol 1 0.500231643960468 0.234817028045654 0.999536712079064 hm5C_site_16524 DeepMRMD:0.234817028045654;iRNA_m5C:0.999536712079064 16525 chr22 50958056 50958056 1 + C T rs8141871 50958064 + 50958044 50958084 41 GGCGCCTCTCTGCAGTCGGGCTGGTAGGAGGGAGTGTCTGG GGCGCCTCTCTGTAGTCGGGCTGGTAGGAGGGAGTGTCTGG < 41bp 1 0.348401217358131 1 0.0483845770359039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCAPH2 ENSG00000025770 UTR3 Human protein_coding chr22:50958064 chr22:50958056 . . 0 13 hm5C_associated_SNPs_14813 0 0 1 0 0 Cytosol 1 0.500231644400782 1 0.999536711198437 hm5C_site_16525 DeepMRMD:1;iRNA_m5C:0.999536711198437 16526 chr22 50959456 50959456 1 + C G rs147011565 50959441 + 50959421 50959461 41 CTGCGGGAGCGGGAGGGGGCCCCAGAGCCTGCATCCTGCGT CTGCGGGAGCGGGAGGGGGCCCCAGAGCCTGCATCGTGCGT < 41bp 1 0.337354474587401 1 0.422895014286041 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50959441 chr22:50959456 synonymous SNV . 0 36 hm5C_associated_SNPs_14814 0 0 1 0 1 Cytosol 1 0.500231643944107 1 0.999536712111787 hm5C_site_16526 DeepMRMD:1;iRNA_m5C:0.999536712111787 16527 chr22 50959459 50959459 1 + C T rs559989268 50959441 + 50959421 50959461 41 CTGCGGGAGCGGGAGGGGGCCCCAGAGCCTGCATCCTGCGT CTGCGGGAGCGGGAGGGGGCCCCAGAGCCTGCATCCTGTGT < 41bp 1 0.336249942409005 1 0.457937389612198 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50959441 chr22:50959459 synonymous SNV . 0 39 hm5C_associated_SNPs_14815 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_16527 DeepMRMD:1;iRNA_m5C:0.999536712157815 16528 chr22 51143520 51143520 1 + C T rs188450024 51143513 + 51143493 51143533 41 GAAGCCAGAAGAGGACGGGGCTCGGCGCAGAGGTGAGGGGT GAAGCCAGAAGAGGACGGGGCTCGGCGTAGAGGTGAGGGGT < 41bp 1 0.290895193599566 1 0.636919260025024 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143513 chr22:51143520 synonymous SNV . 0 28 hm5C_associated_SNPs_14817 0 0 1 0 1 cytosol 1 0.500231643921092 0.726161479949952 0.999536712157815 hm5C_site_16528 DeepMRMD:0.726161479949952;iRNA_m5C:0.999536712157815 16529 chrX 216467 216467 1 + C A rs34986674 216472 + 216452 216492 41 GTGACTCACGCCTGTCATCCCAGCACTTTGGGAGGCGAAGG GTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCGAAGG < 41bp 1 0.646388594814589 1 0.786116719245911 experiment 0.707222810370821 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:216472 chrX:216467 . . 0 16 hm5C_associated_SNPs_14818 0 0 0 0 0 Cytosol 1 0.50023164394047 0.427766561508178 0.999536712119059 hm5C_site_16529 DeepMRMD:0.427766561508178;iRNA_m5C:0.999536712119059 16530 chrX 216678 216678 1 + C T rs190222734 216698 + 216678 216718 41 CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCT TCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCT < 41bp 1 0.57947159176292 1 0.211869686841965 experiment 0.84105681647416 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:216698 chrX:216678 . . 0 1 hm5C_associated_SNPs_14819 0 0 0 0 0 Cytosol 1 0.500231643620278 1 0.999536712759444 hm5C_site_16530 DeepMRMD:1;iRNA_m5C:0.999536712759444 16531 chrX 216682 216682 1 + T C rs146768618 216698 + 216678 216718 41 CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCT CCACCGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCT < 41bp 1 0.608770158192899 1 0.227835774421692 experiment 0.782459683614202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:216698 chrX:216682 . . 0 5 hm5C_associated_SNPs_14820 0 0 0 0 0 Cytosol 1 0.50023164392109 1 0.999536712157821 hm5C_site_16531 DeepMRMD:1;iRNA_m5C:0.999536712157821 16532 chrX 217386 217386 1 + T C rs141617516 217405 + 217385 217425 41 ATTTTTTGAGGAGTCTCACTCTGTCACCCAGGCTGGAGTGC ACTTTTTGAGGAGTCTCACTCTGTCACCCAGGCTGGAGTGC < 41bp 1 0.100949865314253 1 0.478564023971558 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:217405 chrX:217386 . . 0 2 hm5C_associated_SNPs_14821 0 0 1 0 0 Cytosol 1 0.500231644344918 1 0.999536711310165 hm5C_site_16532 DeepMRMD:1;iRNA_m5C:0.999536711310165 16533 chrX 217622 217622 1 + G A rs146229840 217628 + 217608 217648 41 GATCTGCCCGCCTCGACCTCCCAAAGTGCTGGGATGACAGG GATCTGCCCGCCTCAACCTCCCAAAGTGCTGGGATGACAGG < 41bp 1 0.261113972949389 1 0.414379119873047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:217628 chrX:217622 . . 0 15 hm5C_associated_SNPs_14822 0 0 0 0 0 Cytosol 1 0.500231640344309 1 0.999536719311382 hm5C_site_16533 DeepMRMD:1;iRNA_m5C:0.999536719311382 16534 chrX 217622 217622 1 + G A rs146229840 217629 + 217609 217649 41 ATCTGCCCGCCTCGACCTCCCAAAGTGCTGGGATGACAGGC ATCTGCCCGCCTCAACCTCCCAAAGTGCTGGGATGACAGGC < 41bp 1 0.3835704514111 1 0.373152554035187 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:217629 chrX:217622 . . 0 14 hm5C_associated_SNPs_14823 0 0 0 0 0 Cytosol 1 0.500231679698265 1 0.99953664060347 hm5C_site_16534 DeepMRMD:1;iRNA_m5C:0.99953664060347 16535 chrX 217645 217645 1 + C T rs755789308 217628 + 217608 217648 41 GATCTGCCCGCCTCGACCTCCCAAAGTGCTGGGATGACAGG GATCTGCCCGCCTCGACCTCCCAAAGTGCTGGGATGATAGG < 41bp 1 0.231376158066028 1 0.396703690290451 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:217628 chrX:217645 . . 0 38 hm5C_associated_SNPs_14825 0 0 0 0 0 Cytosol 1 0.500231638731939 1 0.999536722536122 hm5C_site_16535 DeepMRMD:1;iRNA_m5C:0.999536722536122 16536 chrX 217645 217645 1 + C T rs755789308 217629 + 217609 217649 41 ATCTGCCCGCCTCGACCTCCCAAAGTGCTGGGATGACAGGC ATCTGCCCGCCTCGACCTCCCAAAGTGCTGGGATGATAGGC < 41bp 1 0.399862462862564 1 0.325136810541153 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:217629 chrX:217645 . . 0 37 hm5C_associated_SNPs_14826 0 0 0 0 0 Cytosol 1 0.500231648361518 1 0.999536703276963 hm5C_site_16536 DeepMRMD:1;iRNA_m5C:0.999536703276963 16537 chrX 217645 217645 1 + C T rs755789308 217649 + 217629 217669 41 CAAAGTGCTGGGATGACAGGCATGAGCCACTGTGCCCAGCC CAAAGTGCTGGGATGATAGGCATGAGCCACTGTGCCCAGCC < 41bp 1 0.638505676952689 1 0.422565400600433 experiment 0.722988646094623 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:217649 chrX:217645 . . 0 17 hm5C_associated_SNPs_14828 0 0 0 0 0 Cytosol 1 0.500231643921063 1 0.999536712157874 hm5C_site_16537 DeepMRMD:1;iRNA_m5C:0.999536712157874 16538 chrX 217662 217662 1 + G A rs192434627 217649 + 217629 217669 41 CAAAGTGCTGGGATGACAGGCATGAGCCACTGTGCCCAGCC CAAAGTGCTGGGATGACAGGCATGAGCCACTGTACCCAGCC < 41bp 1 0.559238646268591 1 0.43538498878479 experiment 0.881522707462818 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:217649 chrX:217662 . . 0 34 hm5C_associated_SNPs_14830 0 0 1 0 0 Cytosol 1 0.500231644069557 1 0.999536711860886 hm5C_site_16538 DeepMRMD:1;iRNA_m5C:0.999536711860886 16539 chrX 217669 217669 1 + C T rs183387425 217649 + 217629 217669 41 CAAAGTGCTGGGATGACAGGCATGAGCCACTGTGCCCAGCC CAAAGTGCTGGGATGACAGGCATGAGCCACTGTGCCCAGCT < 41bp 1 0.547735027772459 1 0.559852242469788 experiment 0.904529944455083 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:217649 chrX:217669 . . 0 41 hm5C_associated_SNPs_14831 0 0 1 0 0 Cytosol 1 0.500231643859689 0.880295515060424 0.999536712280622 hm5C_site_16539 DeepMRMD:0.880295515060424;iRNA_m5C:0.999536712280622 16540 chrX 218362 218362 1 + A G rs181064030 218347 + 218327 218367 41 CTGTCGCCCAGGCTGGAGTGCAGTGGCGCAGTCTCAGCTCA CTGTCGCCCAGGCTGGAGTGCAGTGGCGCAGTCTCGGCTCA < 41bp 1 0.504782778193469 1 0.441014111042023 experiment 0.990434443613061 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:218347 chrX:218362 . . 0 36 hm5C_associated_SNPs_14832 0 0 0 0 0 Cytosol 1 0.500231643921088 1 0.999536712157825 hm5C_site_16540 DeepMRMD:1;iRNA_m5C:0.999536712157825 16541 chrX 218362 218362 1 + A G rs181064030 218353 + 218333 218373 41 CCCAGGCTGGAGTGCAGTGGCGCAGTCTCAGCTCACTGCAA CCCAGGCTGGAGTGCAGTGGCGCAGTCTCGGCTCACTGCAA < 41bp 1 0.667437537713239 1 0.39313817024231 experiment 0.665124924573523 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:218353 chrX:218362 . . 0 30 hm5C_associated_SNPs_14833 0 0 0 0 0 Cytosol 1 0.500231641228552 1 0.999536717542897 hm5C_site_16541 DeepMRMD:1;iRNA_m5C:0.999536717542897 16542 chrX 219429 219429 1 + C T rs184120939 219448 + 219428 219468 41 ACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGATCTCCT ATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGATCTCCT < 41bp 1 0.438570256282549 1 0.214371263980865 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219448 chrX:219429 . . 0 2 hm5C_associated_SNPs_14834 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16542 DeepMRMD:1;iRNA_m5C:0.999536712157815 16543 chrX 219429 219429 1 + C T rs184120939 219449 + 219429 219469 41 CGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGATCTCCTG TGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGATCTCCTG < 41bp 1 0.468630562681741 1 0.100869685411453 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219449 chrX:219429 . . 0 1 hm5C_associated_SNPs_14835 0 0 1 0 0 Cytosol 1 0.500230852347652 1 0.999538295304695 hm5C_site_16543 DeepMRMD:1;iRNA_m5C:0.999538295304695 16544 chrX 219500 219500 1 + C T rs181820684 219490 + 219470 219510 41 ACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGG ACCTCAGGTGATCCACCCGCCTCGGCCTCCTAAAGTGCTGG < 41bp 1 0.505613437035135 1 0.185405075550079 experiment 0.988773125929731 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219490 chrX:219500 . . 0 31 hm5C_associated_SNPs_14836 0 0 0 0 0 Cytosol 1 0.500231643921127 1 0.999536712157745 hm5C_site_16544 DeepMRMD:1;iRNA_m5C:0.999536712157745 16545 chrX 219500 219500 1 + C T rs181820684 219492 + 219472 219512 41 CTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGA CTCAGGTGATCCACCCGCCTCGGCCTCCTAAAGTGCTGGGA < 41bp 1 0.504560671609814 1 0.384274929761887 experiment 0.990878656780373 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219492 chrX:219500 . . 0 29 hm5C_associated_SNPs_14837 0 0 0 0 0 Cytosol 1 0.500231643921038 1 0.999536712157924 hm5C_site_16545 DeepMRMD:1;iRNA_m5C:0.999536712157924 16546 chrX 219500 219500 1 + C T rs181820684 219495 + 219475 219515 41 AGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGA AGGTGATCCACCCGCCTCGGCCTCCTAAAGTGCTGGGATGA < 41bp 1 0.0661218565758786 1 0.187489897012711 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219495 chrX:219500 . . 0 26 hm5C_associated_SNPs_14838 0 0 0 0 0 Cytosol 1 0.500231643916604 1 0.999536712166793 hm5C_site_16546 DeepMRMD:1;iRNA_m5C:0.999536712166793 16547 chrX 219500 219500 1 + C T rs181820684 219496 + 219476 219516 41 GGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGAC GGTGATCCACCCGCCTCGGCCTCCTAAAGTGCTGGGATGAC < 41bp 1 0.25759945995894 1 0.170651823282242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219496 chrX:219500 . . 0 25 hm5C_associated_SNPs_14839 0 0 0 0 0 Cytosol 1 0.50023169923513 1 0.99953660152974 hm5C_site_16547 DeepMRMD:1;iRNA_m5C:0.99953660152974 16548 chrX 219500 219500 1 + C T rs181820684 219498 + 219478 219518 41 TGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAG TGATCCACCCGCCTCGGCCTCCTAAAGTGCTGGGATGACAG < 41bp 1 0.191863852262053 1 0.126328974962234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219498 chrX:219500 . . 0 23 hm5C_associated_SNPs_14840 0 0 0 0 0 Cytosol 1 0.500231643921355 1 0.99953671215729 hm5C_site_16548 DeepMRMD:1;iRNA_m5C:0.99953671215729 16549 chrX 219500 219500 1 + C T rs181820684 219499 + 219479 219519 41 GATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAGG GATCCACCCGCCTCGGCCTCCTAAAGTGCTGGGATGACAGG < 41bp 1 0.615138189710752 1 0.747590005397797 experiment 0.769723620578495 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219499 chrX:219500 . . 0 22 hm5C_associated_SNPs_14841 0 0 0 0 0 Cytosol 1 0.500231644023926 0.504819989204406 0.999536711952149 hm5C_site_16549 DeepMRMD:0.504819989204406;iRNA_m5C:0.999536711952149 16550 chrX 219501 219501 1 + A G rs28645826 219490 + 219470 219510 41 ACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGG ACCTCAGGTGATCCACCCGCCTCGGCCTCCCGAAGTGCTGG < 41bp 1 0.574310682754651 1 0.19996964931488 experiment 0.851378634490698 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219490 chrX:219501 . . 0 32 hm5C_associated_SNPs_14842 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_16550 DeepMRMD:1;iRNA_m5C:0.999536712157814 16551 chrX 219501 219501 1 + A G rs28645826 219492 + 219472 219512 41 CTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGA CTCAGGTGATCCACCCGCCTCGGCCTCCCGAAGTGCTGGGA < 41bp 1 0.517257813678796 1 0.517271280288696 experiment 0.965484372642408 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219492 chrX:219501 . . 0 30 hm5C_associated_SNPs_14843 0 0 0 0 0 Cytosol 1 0.500231643921092 0.965457439422608 0.999536712157815 hm5C_site_16551 DeepMRMD:0.965457439422608;iRNA_m5C:0.999536712157815 16552 chrX 219501 219501 1 + A G rs28645826 219495 + 219475 219515 41 AGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGA AGGTGATCCACCCGCCTCGGCCTCCCGAAGTGCTGGGATGA < 41bp 1 0.0545985117548365 1 0.217758238315582 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219495 chrX:219501 . . 0 27 hm5C_associated_SNPs_14844 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_16552 DeepMRMD:1;iRNA_m5C:0.999536712157816 16553 chrX 219501 219501 1 + A G rs28645826 219496 + 219476 219516 41 GGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGAC GGTGATCCACCCGCCTCGGCCTCCCGAAGTGCTGGGATGAC < 41bp 1 0.238459322201561 1 0.18176057934761 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219496 chrX:219501 . . 0 26 hm5C_associated_SNPs_14845 0 0 0 0 0 Cytosol 1 0.500231646212461 1 0.999536707575077 hm5C_site_16553 DeepMRMD:1;iRNA_m5C:0.999536707575077 16554 chrX 219501 219501 1 + A G rs28645826 219498 + 219478 219518 41 TGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAG TGATCCACCCGCCTCGGCCTCCCGAAGTGCTGGGATGACAG < 41bp 1 0.582257543261971 1 0.344862282276154 experiment 0.835484913476058 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219498 chrX:219501 . . 0 24 hm5C_associated_SNPs_14846 0 0 0 0 0 Cytosol 1 0.500231647283604 1 0.999536705432792 hm5C_site_16554 DeepMRMD:1;iRNA_m5C:0.999536705432792 16555 chrX 219501 219501 1 + A G rs28645826 219499 + 219479 219519 41 GATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAGG GATCCACCCGCCTCGGCCTCCCGAAGTGCTGGGATGACAGG < 41bp 1 0.538602738309966 1 0.697240352630615 experiment 0.922794523380067 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219499 chrX:219501 . . 0 23 hm5C_associated_SNPs_14847 0 0 0 0 0 Cytosol 1 0.500231644460801 0.60551929473877 0.999536711078398 hm5C_site_16555 DeepMRMD:0.60551929473877;iRNA_m5C:0.999536711078398 16556 chrX 219501 219501 1 + A G rs28645826 219500 + 219480 219520 41 ATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAGGC ATCCACCCGCCTCGGCCTCCCGAAGTGCTGGGATGACAGGC < 41bp 1 0.55381982372277 1 0.688049793243408 experiment 0.892360352554461 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219500 chrX:219501 . . 0 22 hm5C_associated_SNPs_14848 0 0 0 0 0 Cytosol 1 0.500231632857168 0.623900413513184 0.999536734285664 hm5C_site_16556 DeepMRMD:0.623900413513184;iRNA_m5C:0.999536734285664 16557 chrX 219504 219504 1 + G A rs28580476 219490 + 219470 219510 41 ACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGG ACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAATGCTGG < 41bp 1 0.544315639307921 1 0.173353493213654 experiment 0.911368721384158 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219490 chrX:219504 . . 0 35 hm5C_associated_SNPs_14849 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16557 DeepMRMD:1;iRNA_m5C:0.999536712157815 16558 chrX 219504 219504 1 + G A rs28580476 219492 + 219472 219512 41 CTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGA CTCAGGTGATCCACCCGCCTCGGCCTCCCAAAATGCTGGGA < 41bp 1 0.501267958428452 1 0.359277278184891 experiment 0.997464083143096 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219492 chrX:219504 . . 0 33 hm5C_associated_SNPs_14850 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16558 DeepMRMD:1;iRNA_m5C:0.999536712157815 16559 chrX 219504 219504 1 + G A rs28580476 219495 + 219475 219515 41 AGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGA AGGTGATCCACCCGCCTCGGCCTCCCAAAATGCTGGGATGA < 41bp 1 0.055299103254359 1 0.14725598692894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219495 chrX:219504 . . 0 30 hm5C_associated_SNPs_14851 0 0 0 0 0 Cytosol 1 0.500231643921091 1 0.999536712157817 hm5C_site_16559 DeepMRMD:1;iRNA_m5C:0.999536712157817 16560 chrX 219504 219504 1 + G A rs28580476 219496 + 219476 219516 41 GGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGAC GGTGATCCACCCGCCTCGGCCTCCCAAAATGCTGGGATGAC < 41bp 1 0.192189152176364 1 0.12188795208931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219496 chrX:219504 . . 0 29 hm5C_associated_SNPs_14852 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16560 DeepMRMD:1;iRNA_m5C:0.999536712157815 16561 chrX 219504 219504 1 + G A rs28580476 219498 + 219478 219518 41 TGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAG TGATCCACCCGCCTCGGCCTCCCAAAATGCTGGGATGACAG < 41bp 1 0.374029428864194 1 0.172017574310303 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219498 chrX:219504 . . 0 27 hm5C_associated_SNPs_14853 0 0 0 0 0 Cytosol 1 0.500231643921292 1 0.999536712157416 hm5C_site_16561 DeepMRMD:1;iRNA_m5C:0.999536712157416 16562 chrX 219504 219504 1 + G A rs28580476 219499 + 219479 219519 41 GATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAGG GATCCACCCGCCTCGGCCTCCCAAAATGCTGGGATGACAGG < 41bp 1 0.360371263254966 1 0.583645701408386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219499 chrX:219504 . . 0 26 hm5C_associated_SNPs_14854 0 0 0 0 0 Cytosol 1 0.500231643977506 0.832708597183228 0.999536712044989 hm5C_site_16562 DeepMRMD:0.832708597183228;iRNA_m5C:0.999536712044989 16563 chrX 219504 219504 1 + G A rs28580476 219500 + 219480 219520 41 ATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAGGC ATCCACCCGCCTCGGCCTCCCAAAATGCTGGGATGACAGGC < 41bp 1 0.613520645383302 1 0.70961856842041 experiment 0.772958709233396 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLCXD1 ENSG00000182378 UTR3 Human protein_coding chrX:219500 chrX:219504 . . 0 25 hm5C_associated_SNPs_14855 0 0 0 0 0 Cytosol 1 0.500231643922308 0.58076286315918 0.999536712155385 hm5C_site_16563 DeepMRMD:0.58076286315918;iRNA_m5C:0.999536712155385 16564 chrX 1428607 1428607 1 + C T rs28416688 1428605 + 1428585 1428625 41 GCCTGCCCAACATGGTGAAACCCCATCTGGACTAAAAATGC GCCTGCCCAACATGGTGAAACCTCATCTGGACTAAAAATGC < 41bp 1 0.541792285928069 1 0.106238752603531 experiment 0.916415428143862 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF2RA ENSG00000198223 UTR3 Human protein_coding chrX:1428605 chrX:1428607 . . 0 23 hm5C_associated_SNPs_14856 0 0 0 1 0 exosome 1 0.499347255027503 1 1 hm5C_site_16564 DeepMRMD:1;iRNA_m5C:1 16565 chrX 2609285 2609285 1 + C T rs747341507 2609296 + 2609276 2609316 41 CTCCCCTCACCCGCCCCCTTCGAGTCCCCGGGCTTCGCCCC CTCCCCTCATCCGCCCCCTTCGAGTCCCCGGGCTTCGCCCC < 41bp 1 0.695518389674534 1 0.401729494333267 experiment 0.608963220650932 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD99 ENSG00000002586 UTR5 Human protein_coding chrX:2609296 chrX:2609285 . . 0 10 hm5C_associated_SNPs_14858 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16565 DeepMRMD:1;iRNA_m5C:0.999536712157815 16566 chrX 2609303 2609303 1 + C T rs3199720 2609296 + 2609276 2609316 41 CTCCCCTCACCCGCCCCCTTCGAGTCCCCGGGCTTCGCCCC CTCCCCTCACCCGCCCCCTTCGAGTCCTCGGGCTTCGCCCC < 41bp 1 0.660182873414028 1 0.427235424518585 experiment 0.679634253171945 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD99 ENSG00000002586 UTR5 Human protein_coding chrX:2609296 chrX:2609303 . . 0 28 hm5C_associated_SNPs_14859 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_16566 DeepMRMD:1;iRNA_m5C:0.999536712157814 16567 chrX 2609303 2609303 1 + C T rs3199720 2609311 + 2609291 2609331 41 CCCTTCGAGTCCCCGGGCTTCGCCCCACCCGGCCCGTGGGG CCCTTCGAGTCCTCGGGCTTCGCCCCACCCGGCCCGTGGGG < 41bp 1 0.438369167998483 1 0.403300404548645 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD99 ENSG00000002586 UTR5 Human protein_coding chrX:2609311 chrX:2609303 . . 0 13 hm5C_associated_SNPs_14860 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164392216 1 0.999536712155679 hm5C_site_16567 DeepMRMD:1;iRNA_m5C:0.999536712155679 16568 chrX 2609312 2609312 1 + G A rs3199721 2609296 + 2609276 2609316 41 CTCCCCTCACCCGCCCCCTTCGAGTCCCCGGGCTTCGCCCC CTCCCCTCACCCGCCCCCTTCGAGTCCCCGGGCTTCACCCC < 41bp 1 0.65705938868246 1 0.286334067583084 experiment 0.68588122263508 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD99 ENSG00000002586 UTR5 Human protein_coding chrX:2609296 chrX:2609312 . . 0 37 hm5C_associated_SNPs_14861 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16568 DeepMRMD:1;iRNA_m5C:0.999536712157815 16569 chrX 2609312 2609312 1 + G A rs3199721 2609311 + 2609291 2609331 41 CCCTTCGAGTCCCCGGGCTTCGCCCCACCCGGCCCGTGGGG CCCTTCGAGTCCCCGGGCTTCACCCCACCCGGCCCGTGGGG < 41bp 1 0.402921031619878 1 0.227206885814667 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD99 ENSG00000002586 UTR5 Human protein_coding chrX:2609311 chrX:2609312 . . 0 22 hm5C_associated_SNPs_14862 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921137 1 0.999536712157725 hm5C_site_16569 DeepMRMD:1;iRNA_m5C:0.999536712157725 16570 chrX 2609324 2609324 1 + C T rs188649260 2609311 + 2609291 2609331 41 CCCTTCGAGTCCCCGGGCTTCGCCCCACCCGGCCCGTGGGG CCCTTCGAGTCCCCGGGCTTCGCCCCACCCGGCTCGTGGGG < 41bp 1 0.450251099461789 1 0.496922731399536 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD99 ENSG00000002586 UTR5 Human protein_coding chrX:2609311 chrX:2609324 . . 0 34 hm5C_associated_SNPs_14863 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16570 DeepMRMD:1;iRNA_m5C:0.999536712157815 16571 chrX 2632482 2632482 1 + C A rs1136447 2632489 + 2632469 2632509 41 GTTTCGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT GTTTCGATTTATCAGATGCCCTTCCTGGTGAGTATCAACAT < 41bp 1 0.0848260868672078 1 0.0686672329902649 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2632489 chrX:2632482 synonymous SNV . 0 14 hm5C_associated_SNPs_14864 0 0 1 0 2 Endoplasmic reticulum 1 0.500231622289426 1 0.999536755421149 hm5C_site_16571 DeepMRMD:1;iRNA_m5C:0.999536755421149 16572 chrX 9469880 9469880 1 + A G rs373782775 9469881 + 9469861 9469901 41 CTCGCAGAGCACCAGGCCCACCGTGAAAGGTACAGCAAATT CTCGCAGAGCACCAGGCCCGCCGTGAAAGGTACAGCAAATT < 41bp 1 0.145300555533996 1 0.177938431501389 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 UTR5 Human protein_coding chrX:9469881 chrX:9469880 . . 0 20 hm5C_associated_SNPs_14865 0 0 1 0 2 Cytosol 1 0.500231643615281 1 0.999536712769438 hm5C_site_16572 DeepMRMD:1;iRNA_m5C:0.999536712769438 16573 chrX 9905606 9905606 1 + C A rs199742414 9905594 + 9905574 9905614 41 CTGGCCGACATCCTGGATCCCAGTGTGAAGATCAAAACCAC CTGGCCGACATCCTGGATCCCAGTGTGAAGATAAAAACCAC < 41bp 1 0.254860980314784 1 0.21014529466629 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9905594 chrX:9905606 synonymous SNV . 0 33 hm5C_associated_SNPs_14866 0 0 0 0 0 cytosol 1 0.500231643921083 1 0.999536712157834 hm5C_site_16573 DeepMRMD:1;iRNA_m5C:0.999536712157834 16574 chrX 11781102 11781102 1 + C A rs143225215 11781084 + 11781064 11781104 41 CACGTTATGCCACATGCCAACATGAACGTGCATTATATCCC CACGTTATGCCACATGCCAACATGAACGTGCATTATATACC < 41bp 1 0.488626142670981 1 0.0673393905162811 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSL3 ENSG00000005302 CDS Human protein_coding chrX:11781084 chrX:11781102 synonymous SNV . 0 39 hm5C_associated_SNPs_14867 0 0 1 0 1 Cytosol 1 0.500231643921188 1 0.999536712157624 hm5C_site_16574 DeepMRMD:1;iRNA_m5C:0.999536712157624 16575 chrX 11784773 11784773 1 + C A rs56355328 11784781 + 11784761 11784801 41 CACCTGGTGCCTCGCGGGCTCAGTGAGTTAGGAAGTCAGCA CACCTGGTGCCTAGCGGGCTCAGTGAGTTAGGAAGTCAGCA < 41bp 1 0.696051418681792 1 0.308112174272537 experiment 0.607897162636416 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSL3 ENSG00000005302 UTR3 Human protein_coding chrX:11784781 chrX:11784773 . . 0 13 hm5C_associated_SNPs_14868 0 0 1 0 0 Cytosol 1 0.500231642018739 1 0.999536715962522 hm5C_site_16575 DeepMRMD:1;iRNA_m5C:0.999536715962522 16576 chrX 11784799 11784799 1 + G A rs41309683 11784781 + 11784761 11784801 41 CACCTGGTGCCTCGCGGGCTCAGTGAGTTAGGAAGTCAGCA CACCTGGTGCCTCGCGGGCTCAGTGAGTTAGGAAGTCAACA < 41bp 1 0.691956732652604 1 0.48053103685379 experiment 0.616086534694791 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSL3 ENSG00000005302 UTR3 Human protein_coding chrX:11784781 chrX:11784799 . . 0 39 hm5C_associated_SNPs_14870 0 0 1 0 0 Cytosol 1 0.500231643924182 1 0.999536712151636 hm5C_site_16576 DeepMRMD:1;iRNA_m5C:0.999536712151636 16577 chrX 13679215 13679215 1 + G A rs5935648 13679220 + 13679200 13679240 41 TGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAG TGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.443399179848883 1 0.0811442136764526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCEANC ENSG00000176896 UTR5 Human protein_coding chrX:13679220 chrX:13679215 . . 0 16 hm5C_associated_SNPs_14873 0 0 0 0 1 Nucleus 1 0.500231646539036 1 0.999536706921927 hm5C_site_16577 DeepMRMD:1;iRNA_m5C:0.999536706921927 16578 chrX 13679215 13679215 1 + G A rs5935648 13679221 + 13679201 13679241 41 GATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG GATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGG < 41bp 1 0.455825227279793 1 0.355705380439758 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCEANC ENSG00000176896 UTR5 Human protein_coding chrX:13679221 chrX:13679215 . . 0 15 hm5C_associated_SNPs_14874 0 0 0 0 1 Nucleus 1 0.500231644099695 1 0.99953671180061 hm5C_site_16578 DeepMRMD:1;iRNA_m5C:0.99953671180061 16579 chrX 13679215 13679215 1 + G A rs5935648 13679222 + 13679202 13679242 41 ATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGG ATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGG < 41bp 1 0.54219728459412 1 0.357540965080261 experiment 0.91560543081176 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCEANC ENSG00000176896 UTR5 Human protein_coding chrX:13679222 chrX:13679215 . . 0 14 hm5C_associated_SNPs_14875 0 0 0 0 1 Nucleus 1 0.500231643921099 1 0.999536712157802 hm5C_site_16579 DeepMRMD:1;iRNA_m5C:0.999536712157802 16580 chrX 14929375 14929375 1 + G A rs35164803 14929381 + 14929361 14929401 41 TCCTTTCAAGTATAGCTATCCACCACTAGTAGATGATGACT TCCTTTCAAGTATAACTATCCACCACTAGTAGATGATGACT < 41bp 1 0.646381201838031 1 0.244753777980804 experiment 0.707237596323939 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14929381 chrX:14929375 nonsynonymous SNV 0.998 3 15 hm5C_associated_SNPs_14877 0 0 0 0 1 Cytosol 1 0.50023164392003 1 0.99953671215994 hm5C_site_16580 DeepMRMD:1;iRNA_m5C:0.99953671215994 16581 chrX 16753432 16753432 1 + C T rs140055188 16753431 + 16753411 16753451 41 AGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAG AGCACAAACAATAAAGAAATCTGTAGAAGAAGGAAAAATAG < 41bp 1 0.65657455853446 1 0.331674158573151 experiment 0.686850882931081 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16753431 chrX:16753432 synonymous SNV . 0 22 hm5C_associated_SNPs_14878 0 0 1 0 3 Ribosome 1 0.500231643912767 1 0.999536712174465 hm5C_site_16581 DeepMRMD:1;iRNA_m5C:0.999536712174465 16582 chrX 16779114 16779114 1 + C T rs753064146 16779096 + 16779076 16779116 41 TGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCGA TGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCTGA < 41bp 1 0.620558841044035 1 0.250597953796387 experiment 0.758882317911931 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYAP1 ENSG00000169895 UTR3 Human protein_coding chrX:16779096 chrX:16779114 . . 0 39 hm5C_associated_SNPs_14879 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16582 DeepMRMD:1;iRNA_m5C:0.999536712157815 16583 chrX 16779114 16779114 1 + C T rs753064146 16779097 + 16779077 16779117 41 GGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCGAG GGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCTGAG < 41bp 1 0.419498571932405 1 0.222468584775925 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYAP1 ENSG00000169895 UTR3 Human protein_coding chrX:16779097 chrX:16779114 . . 0 38 hm5C_associated_SNPs_14880 0 0 0 0 0 Ribosome 1 0.500175113480469 1 0.999649773039063 hm5C_site_16583 DeepMRMD:1;iRNA_m5C:0.999649773039063 16584 chrX 16779114 16779114 1 + C T rs753064146 16779101 + 16779081 16779121 41 GCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGG GCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGG < 41bp 1 0.612867413749462 1 0.137039095163345 experiment 0.774265172501077 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYAP1 ENSG00000169895 UTR3 Human protein_coding chrX:16779101 chrX:16779114 . . 0 34 hm5C_associated_SNPs_14881 0 0 0 0 0 Ribosome 1 0.50023164594362 1 0.999536708112759 hm5C_site_16584 DeepMRMD:1;iRNA_m5C:0.999536708112759 16585 chrX 16965163 16965163 1 + C A rs747915100 16965153 + 16965133 16965173 41 GCGGGGGCCCCGGGTCTGGGCCCCCCGAGGCCGCCAGAGTC GCGGGGGCCCCGGGTCTGGGCCCCCCGAGGACGCCAGAGTC < 41bp 1 0.519093182716848 1 0.126885324716568 experiment 0.961813634566303 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control REPS2 ENSG00000169891 CDS Human protein_coding chrX:16965153 chrX:16965163 nonsynonymous SNV 0.021 1 31 hm5C_associated_SNPs_14882 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16585 DeepMRMD:1;iRNA_m5C:0.999536712157815 16586 chrX 16965163 16965163 1 + C A rs747915100 16965154 + 16965134 16965174 41 CGGGGGCCCCGGGTCTGGGCCCCCCGAGGCCGCCAGAGTCG CGGGGGCCCCGGGTCTGGGCCCCCCGAGGACGCCAGAGTCG < 41bp 1 0.366967053070159 1 0.199631184339523 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control REPS2 ENSG00000169891 CDS Human protein_coding chrX:16965154 chrX:16965163 nonsynonymous SNV 0.021 1 30 hm5C_associated_SNPs_14883 0 0 0 0 1 Nucleus 1 0.500231643941735 1 0.999536712116531 hm5C_site_16586 DeepMRMD:1;iRNA_m5C:0.999536712116531 16587 chrX 16965163 16965163 1 + C A rs747915100 16965155 + 16965135 16965175 41 GGGGGCCCCGGGTCTGGGCCCCCCGAGGCCGCCAGAGTCGC GGGGGCCCCGGGTCTGGGCCCCCCGAGGACGCCAGAGTCGC < 41bp 1 0.58119960612565 1 0.471027225255966 experiment 0.837600787748699 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control REPS2 ENSG00000169891 CDS Human protein_coding chrX:16965155 chrX:16965163 nonsynonymous SNV 0.021 1 29 hm5C_associated_SNPs_14884 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16587 DeepMRMD:1;iRNA_m5C:0.999536712157815 16588 chrX 16965199 16965199 1 + C T rs374993556 16965184 + 16965164 16965204 41 CGCCAGAGTCGCCCCCGGCACGGCCACTGCGGCCGCCGGCC CGCCAGAGTCGCCCCCGGCACGGCCACTGCGGCCGTCGGCC < 41bp 1 0.661982465635777 1 0.429750889539719 experiment 0.676035068728445 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control REPS2 ENSG00000169891 CDS Human protein_coding chrX:16965184 chrX:16965199 nonsynonymous SNV 0.021 0 36 hm5C_associated_SNPs_14886 0 0 0 0 1 Nucleus 1 0.500231644191052 1 0.999536711617897 hm5C_site_16588 DeepMRMD:1;iRNA_m5C:0.999536711617897 16589 chrX 17705962 17705962 1 + C T rs138104885 17705955 + 17705935 17705975 41 CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC CTTCCTCCCAGCCACAAGGCCACCCTGTGTGGAGGAGCTGC < 41bp 1 0.320109222545132 1 0.0274228453636169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705955 chrX:17705962 synonymous SNV . 0 28 hm5C_associated_SNPs_14887 1 0 0 0 1 nucleus 1 0.500231626279957 1 0.999536747440086 hm5C_site_16589 DeepMRMD:1;iRNA_m5C:0.999536747440086 not specified not specified 16590 chrX 17705962 17705962 1 + C T rs138104885 17705959 + 17705939 17705979 41 CTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGCACCG CTCCCAGCCACAAGGCCACCCTGTGTGGAGGAGCTGCACCG < 41bp 1 0.620716280337514 1 0.358493685722351 experiment 0.758567439324972 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705959 chrX:17705962 synonymous SNV . 0 24 hm5C_associated_SNPs_14888 1 0 0 0 1 nucleus 1 0.500229809327594 1 0.999540381344813 hm5C_site_16590 DeepMRMD:1;iRNA_m5C:0.999540381344813 not specified not specified 16591 chrX 19373839 19373839 1 + A C rs1126565 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAGAGGCCACAAGGTTTGCTGCTGCCT < 41bp 1 0.351544157757273 1 0.117314755916595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373839 synonymous SNV . 0 22 hm5C_associated_SNPs_14889 0 0 1 0 2 Ribosome 1 0.500231646252817 1 0.999536707494367 hm5C_site_16591 DeepMRMD:1;iRNA_m5C:0.999536707494367 16592 chrX 19373842 19373842 1 + A G rs35752213 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAGAGGCAACGAGGTTTGCTGCTGCCT < 41bp 1 0.477234496870227 1 0.394874572753906 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373842 synonymous SNV . 0 25 hm5C_associated_SNPs_14890 1 0 1 0 2 Ribosome 1 0.500231643921113 1 0.999536712157774 hm5C_site_16592 DeepMRMD:1;iRNA_m5C:0.999536712157774 not specified not specified 16593 chrX 21869647 21869647 1 + C T rs371946947 21869650 + 21869630 21869670 41 CCTGGTATAAATTTACCCGTCAATCAACTGACCTATTTCTT CCTGGTATAAATTTACCTGTCAATCAACTGACCTATTTCTT < 41bp 1 0.117363692340359 1 0.15087965130806 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21869650 chrX:21869647 synonymous SNV . 0 18 hm5C_associated_SNPs_14891 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643038932 1 0.999536713922137 hm5C_site_16593 DeepMRMD:1;iRNA_m5C:0.999536713922137 16594 chrX 21874905 21874905 1 + G A rs751090496 21874912 + 21874892 21874932 41 TAGGCAACGACTTGGAGGACCAGTTGGCCCTCCCGGATAGC TAGGCAACGACTTAGAGGACCAGTTGGCCCTCCCGGATAGC < 41bp 1 0.13363950972424 1 0.119210124015808 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YY2 ENSG00000230797 CDS Human protein_coding chrX:21874912 chrX:21874905 synonymous SNV . 0 14 hm5C_associated_SNPs_14892 0 0 0 0 0 exosome 1 0.500231643919753 1 0.999536712160495 hm5C_site_16594 DeepMRMD:1;iRNA_m5C:0.999536712160495 16595 chrX 21958851 21958851 1 + A C rs34507903 21958850 + 21958830 21958870 41 CCTGGCCTCCCCGGGCGCAGCACACTCCCAGCCGGCCGCAG CCTGGCCTCCCCGGGCGCAGCCCACTCCCAGCCGGCCGCAG < 41bp 1 0.496018574774147 1 0.154942333698273 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMS ENSG00000102172 UTR5 Human protein_coding chrX:21958850 chrX:21958851 . . 0 22 hm5C_associated_SNPs_14894 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_16595 DeepMRMD:1;iRNA_m5C:0.999536712157815 16596 chrX 21958851 21958851 1 + A C rs34507903 21958852 + 21958832 21958872 41 TGGCCTCCCCGGGCGCAGCACACTCCCAGCCGGCCGCAGCC TGGCCTCCCCGGGCGCAGCCCACTCCCAGCCGGCCGCAGCC < 41bp 1 0.495817472097634 1 0.168920367956161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMS ENSG00000102172 UTR5 Human protein_coding chrX:21958852 chrX:21958851 . . 0 20 hm5C_associated_SNPs_14895 0 0 1 0 0 Ribosome 1 0.500231643922815 1 0.99953671215437 hm5C_site_16596 DeepMRMD:1;iRNA_m5C:0.99953671215437 16597 chrX 24095289 24095289 1 + G A rs111579157 24095295 + 24095275 24095315 41 CCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTA CCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTA < 41bp 1 0.620711379104047 1 0.0969231724739075 experiment 0.758577241791905 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF2S3 ENSG00000130741 UTR3 Human protein_coding chrX:24095295 chrX:24095289 . . 0 15 hm5C_associated_SNPs_14896 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16597 DeepMRMD:1;iRNA_m5C:0.999536712157815 16598 chrX 24095289 24095289 1 + G A rs111579157 24095299 + 24095279 24095319 41 GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTG GGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTG < 41bp 1 0.453022006679339 1 0.0466458797454834 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EIF2S3 ENSG00000130741 UTR3 Human protein_coding chrX:24095299 chrX:24095289 . . 0 11 hm5C_associated_SNPs_14898 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16598 DeepMRMD:1;iRNA_m5C:0.999536712157815 16599 chrX 24095289 24095289 1 + G A rs111579157 24095302 + 24095282 24095322 41 TTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGA TTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGA < 41bp 1 0.680577898166225 1 0.707914888858795 experiment 0.638844203667549 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EIF2S3 ENSG00000130741 UTR3 Human protein_coding chrX:24095302 chrX:24095289 . . 0 8 hm5C_associated_SNPs_14900 0 0 1 0 0 Cytosol 1 0.500231643921093 0.58417022228241 0.999536712157815 hm5C_site_16599 DeepMRMD:0.58417022228241;iRNA_m5C:0.999536712157815 16600 chrX 24095289 24095289 1 + G A rs111579157 24095305 + 24095285 24095325 41 AAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTA AAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTA < 41bp 1 0.12424931856034 1 0.108385771512985 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EIF2S3 ENSG00000130741 UTR3 Human protein_coding chrX:24095305 chrX:24095289 . . 0 5 hm5C_associated_SNPs_14901 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16600 DeepMRMD:1;iRNA_m5C:0.999536712157815 16601 chrX 24095289 24095289 1 + G A rs111579157 24095306 + 24095286 24095326 41 AGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTAC AGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTAC < 41bp 1 0.484960094032919 1 0.333979547023773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EIF2S3 ENSG00000130741 UTR3 Human protein_coding chrX:24095306 chrX:24095289 . . 0 4 hm5C_associated_SNPs_14902 0 0 1 0 0 Cytosol 1 0.500231644001196 1 0.999536711997607 hm5C_site_16601 DeepMRMD:1;iRNA_m5C:0.999536711997607 16602 chrX 24095289 24095289 1 + G A rs111579157 24095309 + 24095289 24095329 41 GATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGG AATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGG < 41bp 1 0.480846634714635 1 0.598614096641541 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EIF2S3 ENSG00000130741 UTR3 Human protein_coding chrX:24095309 chrX:24095289 . . 0 1 hm5C_associated_SNPs_14903 0 0 1 0 0 Cytosol 1 0.500231643921092 0.802771806716918 0.999536712157815 hm5C_site_16602 DeepMRMD:0.802771806716918;iRNA_m5C:0.999536712157815 16603 chrX 38665213 38665213 1 + G A rs143804380 38665198 + 38665178 38665218 41 CCCGCCGCCCTGCGGTTGGGCCGGTGGAGGCCCAGGCGTTG CCCGCCGCCCTGCGGTTGGGCCGGTGGAGGCCCAGACGTTG < 41bp 1 0.646143492799542 1 0.425233364105225 experiment 0.707713014400916 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control MID1IP1 ENSG00000165175 UTR3 Human protein_coding chrX:38665198 chrX:38665213 . . 0 36 hm5C_associated_SNPs_14905 0 0 1 0 0 cytosol 1 0.500231643921062 1 0.999536712157875 hm5C_site_16603 DeepMRMD:1;iRNA_m5C:0.999536712157875 16604 chrX 38665213 38665213 1 + G A rs143804380 38665208 + 38665188 38665228 41 TGCGGTTGGGCCGGTGGAGGCCCAGGCGTTGCTAGGATTGC TGCGGTTGGGCCGGTGGAGGCCCAGACGTTGCTAGGATTGC < 41bp 1 0.339824660234174 1 0.38881653547287 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MID1IP1 ENSG00000165175 UTR3 Human protein_coding chrX:38665208 chrX:38665213 . . 0 26 hm5C_associated_SNPs_14906 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16604 DeepMRMD:1;iRNA_m5C:0.999536712157815 16605 chrX 38665213 38665213 1 + G A rs143804380 38665209 + 38665189 38665229 41 GCGGTTGGGCCGGTGGAGGCCCAGGCGTTGCTAGGATTGCA GCGGTTGGGCCGGTGGAGGCCCAGACGTTGCTAGGATTGCA < 41bp 1 0.652155871165056 1 0.343832790851593 experiment 0.695688257669887 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MID1IP1 ENSG00000165175 UTR3 Human protein_coding chrX:38665209 chrX:38665213 . . 0 25 hm5C_associated_SNPs_14907 0 0 1 0 0 cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_16605 DeepMRMD:1;iRNA_m5C:0.999536712157812 16606 chrX 38665213 38665213 1 + G A rs143804380 38665210 + 38665190 38665230 41 CGGTTGGGCCGGTGGAGGCCCAGGCGTTGCTAGGATTGCAT CGGTTGGGCCGGTGGAGGCCCAGACGTTGCTAGGATTGCAT < 41bp 1 0.481781334803177 1 0.334898799657822 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control MID1IP1 ENSG00000165175 UTR3 Human protein_coding chrX:38665210 chrX:38665213 . . 0 24 hm5C_associated_SNPs_14908 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16606 DeepMRMD:1;iRNA_m5C:0.999536712157815 16607 chrX 40450506 40450506 1 + C T rs150392503 40450488 + 40450468 40450508 41 GTGCTTTTCAATGTTTAGGACCTTTCTTGGCCAGGACTCGC GTGCTTTTCAATGTTTAGGACCTTTCTTGGCCAGGACTTGC < 41bp 1 0.0226647227190549 1 0.0104721784591675 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40450488 chrX:40450506 synonymous SNV . 0 39 hm5C_associated_SNPs_14909 1 0 1 0 1 Ribosome 1 0.500231644540266 1 0.999536710919469 hm5C_site_16607 DeepMRMD:1;iRNA_m5C:0.999536710919469 not specified not specified 16608 chrX 40944905 40944905 1 + C T rs190296056 40944889 + 40944869 40944909 41 CGCCTCTCTCTCACGGGAGGCGGCCGCCTTAGCGCCCGGTG CGCCTCTCTCTCACGGGAGGCGGCCGCCTTAGCGCCTGGTG < 41bp 1 0.376684758143809 1 0.657053709030151 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP9X ENSG00000124486 UTR5 Human protein_coding chrX:40944889 chrX:40944905 . . 0 37 hm5C_associated_SNPs_14910 0 0 1 0 0 Nucleus 1 0.500231643920897 0.685892581939698 0.999536712158207 hm5C_site_16608 DeepMRMD:0.685892581939698;iRNA_m5C:0.999536712158207 16609 chrX 41193292 41193292 1 + G A rs183894960 41193286 + 41193266 41193306 41 TGAGCTTAGACCTGAGGGAGCGCGCAGTAGCCGGGCAGAAG TGAGCTTAGACCTGAGGGAGCGCGCAATAGCCGGGCAGAAG < 41bp 1 0.55689290836472 1 0.48804047703743 experiment 0.886214183270559 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX3X ENSG00000215301 UTR5 Human protein_coding chrX:41193286 chrX:41193292 . . 0 27 hm5C_associated_SNPs_14911 0 0 1 0 0 Nucleus 1 0.500231643929246 1 0.999536712141509 hm5C_site_16609 DeepMRMD:1;iRNA_m5C:0.999536712141509 16610 chrX 47065741 47065741 1 + C G rs201672447 47065738 + 47065718 47065758 41 GGCAATGTGCAGGTGGTGATCCCCTTCCTGACAGAGTCGTA GGCAATGTGCAGGTGGTGATCCCGTTCCTGACAGAGTCGTA < 41bp 1 0.465580134148599 1 0.153965085744858 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47065738 chrX:47065741 synonymous SNV . 0 24 hm5C_associated_SNPs_14912 0 0 1 0 1 Nucleus 1 0.500228268985347 1 0.999543462029306 hm5C_site_16610 DeepMRMD:1;iRNA_m5C:0.999543462029306 16611 chrX 47430973 47430973 1 + C T rs755675686 47430993 + 47430973 47431013 41 CCCTGGGAGATGAGGGGGTCCCCATGTGCTTTTCCAGTTCT TCCTGGGAGATGAGGGGGTCCCCATGTGCTTTTCCAGTTCT < 41bp 1 0.347205617007925 1 0.210542142391205 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 UTR3 Human protein_coding chrX:47430993 chrX:47430973 . . 0 1 hm5C_associated_SNPs_14914 0 0 1 1 0 Cytosol 1 0.500231642726643 1 0.999536714546715 hm5C_site_16611 DeepMRMD:1;iRNA_m5C:0.999536714546715 16612 chrX 47431033 47431033 1 + C T rs112568375 47431029 + 47431009 47431049 41 GTTCTTCTGGAATTGGGGGACCCCCGCCAAAGACTGAGCCC GTTCTTCTGGAATTGGGGGACCCCTGCCAAAGACTGAGCCC < 41bp 1 0.394117300120074 1 0.163039326667786 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 UTR3 Human protein_coding chrX:47431029 chrX:47431033 . . 0 25 hm5C_associated_SNPs_14915 0 0 1 1 0 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_16612 DeepMRMD:1;iRNA_m5C:0.999536712157812 16613 chrX 47431033 47431033 1 + C T rs112568375 47431030 + 47431010 47431050 41 TTCTTCTGGAATTGGGGGACCCCCGCCAAAGACTGAGCCCC TTCTTCTGGAATTGGGGGACCCCTGCCAAAGACTGAGCCCC < 41bp 1 0.223615768929365 1 0.0710371732711792 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 UTR3 Human protein_coding chrX:47431030 chrX:47431033 . . 0 24 hm5C_associated_SNPs_14916 0 0 1 1 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_16613 DeepMRMD:1;iRNA_m5C:0.999536712157815 16614 chrX 47431033 47431033 1 + C T rs112568375 47431031 + 47431011 47431051 41 TCTTCTGGAATTGGGGGACCCCCGCCAAAGACTGAGCCCCC TCTTCTGGAATTGGGGGACCCCTGCCAAAGACTGAGCCCCC < 41bp 1 0.316922920057762 1 0.308443605899811 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 UTR3 Human protein_coding chrX:47431031 chrX:47431033 . . 0 23 hm5C_associated_SNPs_14917 0 0 1 1 0 Cytosol 1 0.500231643921087 1 0.999536712157826 hm5C_site_16614 DeepMRMD:1;iRNA_m5C:0.999536712157826 16615 chrX 48344344 48344344 1 + C T rs149911384 48344342 + 48344322 48344362 41 GTCTTACCTCTTCTTTAAACCTCTTCAGGAGTGTCCTGATT GTCTTACCTCTTCTTTAAACCTTTTCAGGAGTGTCCTGATT < 41bp 1 0.0786228939883657 1 0.0439575910568237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FTSJ1 ENSG00000068438 UTR3 Human protein_coding chrX:48344342 chrX:48344344 . . 0 23 hm5C_associated_SNPs_14919 0 0 1 1 0 Ribosome 1 0.500231643921099 1 0.999536712157803 hm5C_site_16615 DeepMRMD:1;iRNA_m5C:0.999536712157803 16616 chrX 48435928 48435928 1 + C G rs235829 48435925 + 48435905 48435945 41 TATAAAGGTTTTTGGAGCTGCACCGAAGCATCTTATTTTAT TATAAAGGTTTTTGGAGCTGCACGGAAGCATCTTATTTTAT < 41bp 1 0.398089227025841 1 0.0809211134910583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM3 ENSG00000102317 CDS Human protein_coding chrX:48435925 chrX:48435928 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_14920 0 0 1 7 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16616 DeepMRMD:1;iRNA_m5C:0.999536712157815 16617 chrX 48927264 48927264 1 + G A rs188394789 48927274 + 48927254 48927294 41 TGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAG TGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAG < 41bp 1 0.294273726498191 1 0.0933359563350677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC120 ENSG00000147144 UTR3 Human protein_coding chrX:48927274 chrX:48927264 . . 0 11 hm5C_associated_SNPs_14922 0 0 0 0 0 cytosol 1 0.500231643921131 1 0.999536712157737 hm5C_site_16617 DeepMRMD:1;iRNA_m5C:0.999536712157737 16618 chrX 48927264 48927264 1 + G A rs188394789 48927275 + 48927255 48927295 41 GATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGC GATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGC < 41bp 1 0.349981195279645 1 0.149203181266785 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC120 ENSG00000147144 UTR3 Human protein_coding chrX:48927275 chrX:48927264 . . 0 10 hm5C_associated_SNPs_14923 0 0 0 0 0 cytosol 1 0.500231643921113 1 0.999536712157774 hm5C_site_16618 DeepMRMD:1;iRNA_m5C:0.999536712157774 16619 chrX 48927264 48927264 1 + G A rs188394789 48927276 + 48927256 48927296 41 ATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGCC ATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGCC < 41bp 1 0.50036947999946 1 0.483341932296753 experiment 0.99926104000108 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC120 ENSG00000147144 UTR3 Human protein_coding chrX:48927276 chrX:48927264 . . 0 9 hm5C_associated_SNPs_14924 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16619 DeepMRMD:1;iRNA_m5C:0.999536712157815 16620 chrX 49031026 49031026 1 + G A rs146996859 49031034 + 49031014 49031054 41 CCTGCAGACCCCGCAGATGGCCCGGTGTAGGCGAACTTCCC CCTGCAGACCCCACAGATGGCCCGGTGTAGGCGAACTTCCC < 41bp 1 0.486156765796024 1 0.0902201235294342 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLP2 ENSG00000102007 CDS Human protein_coding chrX:49031034 chrX:49031026 nonsynonymous SNV 0.367 0 13 hm5C_associated_SNPs_14927 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16620 DeepMRMD:1;iRNA_m5C:0.999536712157815 16621 chrX 49103973 49103973 1 + C A rs183877705 49103974 + 49103954 49103994 41 TAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGATGTGCC TAGGAGCCCCAGGCCCAGGACACTCAGGTGTCAGATGTGCC < 41bp 1 0.0855079114982349 1 0.0480757057666779 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103974 chrX:49103973 nonsynonymous SNV 0.930 1 20 hm5C_associated_SNPs_14929 1 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16621 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 16622 chrX 49126656 49126656 1 + C T rs111505885 49126639 + 49126619 49126659 41 AGGCTTGCCCCGAGCCCTCACCGCTGTGCCCCGTCCCCGCT AGGCTTGCCCCGAGCCCTCACCGCTGTGCCCCGTCCCTGCT < 41bp 1 0.3014398902652 1 0.13234007358551 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R3F ENSG00000049769 CDS Human protein_coding chrX:49126639 chrX:49126656 synonymous SNV . 0 38 hm5C_associated_SNPs_14930 0 0 1 0 0 Endoplasmic reticulum 1 0.5002316498007 1 0.999536700398599 hm5C_site_16622 DeepMRMD:1;iRNA_m5C:0.999536700398599 16623 chrX 49368288 49368288 1 + G C rs1967646 49368274 + 49368254 49368294 41 TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTGATAGCC TATTTTTTATTTTTAAGGGCCGAAGCCTGAAGCTCATAGCC < 41bp 1 0.18062103035614 1 0.421843379735947 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GAGE1 ENSG00000205777 CDS Human protein_coding chrX:49368274 chrX:49368288 nonsynonymous SNV 0.008 2 35 hm5C_associated_SNPs_14932 0 0 0 4 1 Ribosome 1 0.500231643920976 1 0.999536712158048 hm5C_site_16623 DeepMRMD:1;iRNA_m5C:0.999536712158048 16624 chrX 49689845 49689845 1 + A G rs185140502 49689825 + 49689805 49689845 41 AAAACAGGGCCACATAGCTGCCTTTCTATCAAGTCTCCCTA AAAACAGGGCCACATAGCTGCCTTTCTATCAAGTCTCCCTG < 41bp 1 0.0931191603217765 1 0.00652015209197998 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN5 ENSG00000171365 UTR5 Human protein_coding chrX:49689825 chrX:49689845 . . 0 41 hm5C_associated_SNPs_14933 0 0 1 0 1 Nucleus 1 0.500231649139216 1 0.999536701721569 hm5C_site_16624 DeepMRMD:1;iRNA_m5C:0.999536701721569 16625 chrX 53223819 53223819 1 + C T rs76525703 53223826 - 53223806 53223846 41 GCCCAGTCCACTGGCATCATCGAGCACGGCCTCCTCTACAA GCCCAGTCCACTGGCATCATCGAGCACAGCCTCCTCTACAA < 41bp 1 0.570143058727418 1 0.916337609291077 experiment 0.859713882545164 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM5C ENSG00000126012 CDS Human protein_coding chrX:53223826 chrX:53223819 synonymous SNV . 0 28 hm5C_associated_SNPs_14934 1 0 1 0 0 Nucleus 1 0.50023164391633 0.167324781417846 0.99953671216734 hm5C_site_16625 DeepMRMD:0.167324781417846;iRNA_m5C:0.99953671216734 not specified not specified 16626 chrX 54836361 54836361 1 + A G rs1043031 54836360 + 54836340 54836380 41 GGCACCTGCCACCCAGGCCTCATCTACTACTCAGCTGACTG GGCACCTGCCACCCAGGCCTCGTCTACTACTCAGCTGACTG < 41bp 1 0.187727313635007 1 0.0830460786819458 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54836360 chrX:54836361 synonymous SNV . 0 22 hm5C_associated_SNPs_14935 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16626 DeepMRMD:1;iRNA_m5C:0.999536712157815 16627 chrX 57405163 57405163 1 + T C rs4826543 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC CGCTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC < 41bp 1 0.484803651950889 1 0.178863972425461 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405163 synonymous SNV . 0 3 hm5C_associated_SNPs_14937 0 0 0 0 2 nucleus 1 0.500231095037912 1 0.999537809924176 hm5C_site_16627 DeepMRMD:1;iRNA_m5C:0.999537809924176 16628 chrX 57619248 57619248 1 + T A rs746279216 57619252 + 57619232 57619272 41 GGCCCGGCCGCCGCCCTGGGCCCCCGCGGACCGCTGGGCTC GGCCCGGCCGCCGCCCAGGGCCCCCGCGGACCGCTGGGCTC < 41bp 1 0.426153423889825 1 0.138142377138138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZXDB ENSG00000198455 CDS Human protein_coding chrX:57619252 chrX:57619248 nonsynonymous SNV 0.033 0 17 hm5C_associated_SNPs_14938 0 0 0 0 0 Cytosol 1 0.500231643956823 1 0.999536712086354 hm5C_site_16628 DeepMRMD:1;iRNA_m5C:0.999536712086354 16629 chrX 57619248 57619248 1 + T A rs746279216 57619254 + 57619234 57619274 41 CCCGGCCGCCGCCCTGGGCCCCCGCGGACCGCTGGGCTCCG CCCGGCCGCCGCCCAGGGCCCCCGCGGACCGCTGGGCTCCG < 41bp 1 0.685944494426485 1 0.211237281560898 experiment 0.62811101114703 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZXDB ENSG00000198455 CDS Human protein_coding chrX:57619254 chrX:57619248 nonsynonymous SNV 0.033 0 15 hm5C_associated_SNPs_14940 0 0 0 0 0 Cytosol 1 0.500231643920706 1 0.999536712158588 hm5C_site_16629 DeepMRMD:1;iRNA_m5C:0.999536712158588 16630 chrX 64887696 64887696 1 + C T rs373874891 64887704 + 64887684 64887724 41 CAACTCCGCTGCCTTTGCCGCCACCATGCCCAAAACGGTGA CAACTCCGCTGCTTTTGCCGCCACCATGCCCAAAACGGTGA < 41bp 1 0.293203387177904 1 0.198740512132645 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MSN ENSG00000147065 UTR5 Human protein_coding chrX:64887704 chrX:64887696 . . 0 13 hm5C_associated_SNPs_14942 0 0 1 0 1 Ribosome 1 0.500231643921115 1 0.999536712157769 hm5C_site_16630 DeepMRMD:1;iRNA_m5C:0.999536712157769 16631 chrX 64887696 64887696 1 + C T rs373874891 64887705 + 64887685 64887725 41 AACTCCGCTGCCTTTGCCGCCACCATGCCCAAAACGGTGAG AACTCCGCTGCTTTTGCCGCCACCATGCCCAAAACGGTGAG < 41bp 1 0.586004545262497 1 0.423947811126709 experiment 0.827990909475007 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MSN ENSG00000147065 UTR5 Human protein_coding chrX:64887705 chrX:64887696 . . 0 12 hm5C_associated_SNPs_14943 0 0 1 0 1 Ribosome 1 0.50023164392101 1 0.99953671215798 hm5C_site_16631 DeepMRMD:1;iRNA_m5C:0.99953671215798 16632 chrX 64960287 64960287 1 + T C rs192766716 64960284 + 64960264 64960304 41 GAGTTATTTAGGCTTTGTAACGATTGGGGGATAAAAAGATG GAGTTATTTAGGCTTTGTAACGACTGGGGGATAAAAAGATG < 41bp 1 0.364281179180483 1 0.737002015113831 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSN ENSG00000147065 UTR3 Human protein_coding chrX:64960284 chrX:64960287 . . 0 24 hm5C_associated_SNPs_14944 0 0 1 1 0 Ribosome 1 0.500231643921092 0.525995969772338 0.999536712157815 hm5C_site_16632 DeepMRMD:0.525995969772338;iRNA_m5C:0.999536712157815 16633 chrX 64960801 64960801 1 + A G rs13731 64960798 + 64960778 64960818 41 AGCTCCTGCTCCACAGCCATCCCAGCCTTGGCATCTAGAGC AGCTCCTGCTCCACAGCCATCCCGGCCTTGGCATCTAGAGC < 41bp 1 0.433475385798084 1 0.197098582983017 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSN ENSG00000147065 UTR3 Human protein_coding chrX:64960798 chrX:64960801 . . 0 24 hm5C_associated_SNPs_14945 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16633 DeepMRMD:1;iRNA_m5C:0.999536712157815 16634 chrX 64960801 64960801 1 + A G rs13731 64960799 + 64960779 64960819 41 GCTCCTGCTCCACAGCCATCCCAGCCTTGGCATCTAGAGCT GCTCCTGCTCCACAGCCATCCCGGCCTTGGCATCTAGAGCT < 41bp 1 0.433068913313903 1 0.324598371982574 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSN ENSG00000147065 UTR3 Human protein_coding chrX:64960799 chrX:64960801 . . 0 23 hm5C_associated_SNPs_14946 0 0 1 0 0 Ribosome 1 0.500274398405928 1 0.999451203188144 hm5C_site_16634 DeepMRMD:1;iRNA_m5C:0.999451203188144 16635 chrX 64960801 64960801 1 + A G rs13731 64960800 + 64960780 64960820 41 CTCCTGCTCCACAGCCATCCCAGCCTTGGCATCTAGAGCTT CTCCTGCTCCACAGCCATCCCGGCCTTGGCATCTAGAGCTT < 41bp 1 0.676485852944306 1 0.797221958637238 experiment 0.647028294111389 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSN ENSG00000147065 UTR3 Human protein_coding chrX:64960800 chrX:64960801 . . 0 22 hm5C_associated_SNPs_14947 0 0 1 0 0 Ribosome 1 0.500231643921092 0.405556082725524 0.999536712157815 hm5C_site_16635 DeepMRMD:0.405556082725524;iRNA_m5C:0.999536712157815 16636 chrX 64961206 64961206 1 + T C rs188822868 64961200 + 64961180 64961220 41 TTCTGCCTTCCTTGCTAATGCACCATTAGAAGATATTAGTC TTCTGCCTTCCTTGCTAATGCACCATCAGAAGATATTAGTC < 41bp 1 0.554775942742309 1 0.556874334812164 experiment 0.890448114515382 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSN ENSG00000147065 UTR3 Human protein_coding chrX:64961200 chrX:64961206 . . 0 27 hm5C_associated_SNPs_14948 0 0 1 0 0 Ribosome 1 0.500231643830674 0.886251330375672 0.999536712338652 hm5C_site_16636 DeepMRMD:0.886251330375672;iRNA_m5C:0.999536712338652 16637 chrX 68049341 68049341 1 + C G rs756470369 68049334 + 68049314 68049354 41 CGGGCGGGATCACCCGGGGGCGCAGAGCCCCCGTCGCGCCT CGGGCGGGATCACCCGGGGGCGCAGAGGCCCCGTCGCGCCT < 41bp 1 0.642223735944106 1 0.414194941520691 experiment 0.715552528111789 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNB1 ENSG00000090776 UTR5 Human protein_coding chrX:68049334 chrX:68049341 . . 0 28 hm5C_associated_SNPs_14949 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921132 1 0.999536712157737 hm5C_site_16637 DeepMRMD:1;iRNA_m5C:0.999536712157737 16638 chrX 68049341 68049341 1 + C G rs756470369 68049342 + 68049322 68049362 41 ATCACCCGGGGGCGCAGAGCCCCCGTCGCGCCTCGTGCGGC ATCACCCGGGGGCGCAGAGGCCCCGTCGCGCCTCGTGCGGC < 41bp 1 0.533945977771331 1 0.448727816343307 experiment 0.932108044457339 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EFNB1 ENSG00000090776 UTR5 Human protein_coding chrX:68049342 chrX:68049341 . . 0 20 hm5C_associated_SNPs_14950 0 0 0 0 0 Endoplasmic reticulum 1 0.500231639559579 1 0.999536720880841 hm5C_site_16638 DeepMRMD:1;iRNA_m5C:0.999536720880841 16639 chrX 68049341 68049341 1 + C G rs756470369 68049343 + 68049323 68049363 41 TCACCCGGGGGCGCAGAGCCCCCGTCGCGCCTCGTGCGGCA TCACCCGGGGGCGCAGAGGCCCCGTCGCGCCTCGTGCGGCA < 41bp 1 0.586973942092349 1 0.20517697930336 experiment 0.826052115815302 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNB1 ENSG00000090776 UTR5 Human protein_coding chrX:68049343 chrX:68049341 . . 0 19 hm5C_associated_SNPs_14951 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16639 DeepMRMD:1;iRNA_m5C:0.999536712157815 16640 chrX 68049341 68049341 1 + C G rs756470369 68049344 + 68049324 68049364 41 CACCCGGGGGCGCAGAGCCCCCGTCGCGCCTCGTGCGGCAG CACCCGGGGGCGCAGAGGCCCCGTCGCGCCTCGTGCGGCAG < 41bp 1 0.242135921081619 1 0.177278578281403 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNB1 ENSG00000090776 UTR5 Human protein_coding chrX:68049344 chrX:68049341 . . 0 18 hm5C_associated_SNPs_14952 0 0 0 0 0 Endoplasmic reticulum 1 0.50023164392092 1 0.999536712158161 hm5C_site_16640 DeepMRMD:1;iRNA_m5C:0.999536712158161 16641 chrX 68049341 68049341 1 + C G rs756470369 68049345 + 68049325 68049365 41 ACCCGGGGGCGCAGAGCCCCCGTCGCGCCTCGTGCGGCAGC ACCCGGGGGCGCAGAGGCCCCGTCGCGCCTCGTGCGGCAGC < 41bp 1 0.620511307584245 1 0.140224516391754 experiment 0.75897738483151 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNB1 ENSG00000090776 UTR5 Human protein_coding chrX:68049345 chrX:68049341 . . 0 17 hm5C_associated_SNPs_14953 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_16641 DeepMRMD:1;iRNA_m5C:0.999536712157815 16642 chrX 68059868 68059868 1 + G A rs150883256 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT ATCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.163290426775866 1 0.0865897238254547 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059868 nonsynonymous SNV 0.987 1 1 hm5C_associated_SNPs_14954 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921104 1 0.999536712157792 hm5C_site_16642 DeepMRMD:1;iRNA_m5C:0.999536712157792 16643 chrX 68059869 68059869 1 + T C rs16989105 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GCCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.184316162693402 1 0.0956226885318756 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059869 nonsynonymous SNV 0.985 1 2 hm5C_associated_SNPs_14955 1 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16643 DeepMRMD:1;iRNA_m5C:0.999536712157815 Craniofrontonasal dysplasia Craniofrontonasal dysplasia 16644 chrX 69255747 69255747 1 + T C rs191615628 69255741 + 69255721 69255761 41 TATGGCATGACTCTTCAACCCCGAGGTCCCTGTTGTCAGAT TATGGCATGACTCTTCAACCCCGAGGCCCCTGTTGTCAGAT < 41bp 1 0.226713494344637 1 0.264470100402832 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EDA ENSG00000158813 UTR3 Human protein_coding chrX:69255741 chrX:69255747 . . 0 27 hm5C_associated_SNPs_14956 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16644 DeepMRMD:1;iRNA_m5C:0.999536712157815 16645 chrX 69255747 69255747 1 + T C rs191615628 69255742 + 69255722 69255762 41 ATGGCATGACTCTTCAACCCCGAGGTCCCTGTTGTCAGATC ATGGCATGACTCTTCAACCCCGAGGCCCCTGTTGTCAGATC < 41bp 1 0.376228713214516 1 0.713467955589294 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EDA ENSG00000158813 UTR3 Human protein_coding chrX:69255742 chrX:69255747 . . 0 26 hm5C_associated_SNPs_14957 0 0 0 0 0 cytosol 1 0.500231643921092 0.573064088821412 0.999536712157815 hm5C_site_16645 DeepMRMD:0.573064088821412;iRNA_m5C:0.999536712157815 16646 chrX 69255840 69255840 1 + G A rs140795841 69255846 + 69255826 69255866 41 CAGACTCTGGGGGTGGACATCTGACCCCAAGGGGGCTGCTG CAGACTCTGGGGGTAGACATCTGACCCCAAGGGGGCTGCTG < 41bp 1 0.331596007931732 1 0.0625399351119995 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EDA ENSG00000158813 UTR3 Human protein_coding chrX:69255846 chrX:69255840 . . 0 15 hm5C_associated_SNPs_14958 0 0 0 0 0 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_16646 DeepMRMD:1;iRNA_m5C:0.999536712157815 16647 chrX 69622462 69622462 1 + A G rs760173748 69622447 + 69622427 69622467 41 TTGCTGACCTACAGCAGAAGCTGCTGGATGCAGAAAGTGAA TTGCTGACCTACAGCAGAAGCTGCTGGATGCAGAAGGTGAA < 41bp 1 0.367782549971193 1 0.0833665132522583 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69622447 chrX:69622462 nonsynonymous SNV 0.999 1 36 hm5C_associated_SNPs_14959 0 0 1 0 2 chromatin 1 0.500231647056378 1 0.999536705887245 hm5C_site_16647 DeepMRMD:1;iRNA_m5C:0.999536705887245 16648 chrX 70356372 70356372 1 + T C rs201843482 70356356 + 70356336 70356376 41 TGCCCCCAGAAGATGAGGAGCCGCCTGCTCCTACCCTGCTA TGCCCCCAGAAGATGAGGAGCCGCCTGCTCCTACCCCGCTA < 41bp 1 0.168985988461919 1 0.0835151672363281 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70356356 chrX:70356372 nonsynonymous SNV 0.987 0 37 hm5C_associated_SNPs_14960 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16648 DeepMRMD:1;iRNA_m5C:0.999536712157815 16649 chrX 70777435 70777435 1 + G A rs34739713 70777454 + 70777434 70777474 41 TGCATCCTCATCATAGTATGCTATATCCTCTTTCTCATGGC TACATCCTCATCATAGTATGCTATATCCTCTTTCTCATGGC < 41bp 1 0.365791907973 1 0.148329377174377 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70777454 chrX:70777435 synonymous SNV . 0 2 hm5C_associated_SNPs_14961 0 0 1 0 2 Nucleus 1 0.500231522851867 1 0.999536954296266 hm5C_site_16649 DeepMRMD:1;iRNA_m5C:0.999536954296266 16650 chrX 70794241 70794241 1 + A G rs183943406 70794243 + 70794223 70794263 41 GACCTAATATTTGGAGCTATCAGTGCTTTGTTGATTTAGAT GACCTAATATTTGGAGCTGTCAGTGCTTTGTTGATTTAGAT < 41bp 1 0.362474377173518 1 0.769671022891998 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCYRN1 ENSG00000147162 UTR3 Human protein_coding chrX:70794243 chrX:70794241 . . 0 19 hm5C_associated_SNPs_14962 0 0 1 1 0 unknown 1 0.500231643921064 0.460657954216004 0.999536712157873 hm5C_site_16650 DeepMRMD:0.460657954216004;iRNA_m5C:0.999536712157873 16651 chrX 70795516 70795516 1 + G A rs191878713 70795528 + 70795508 70795548 41 CCTGGCACGAAAAGTAGCCGCTCTGGTTGAAGCTTTGCTTA CCTGGCACAAAAAGTAGCCGCTCTGGTTGAAGCTTTGCTTA < 41bp 1 0.549124755479698 1 0.445410281419754 experiment 0.901750489040604 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BCYRN1 ENSG00000147162 UTR3 Human protein_coding chrX:70795528 chrX:70795516 . . 0 9 hm5C_associated_SNPs_14963 0 0 1 0 0 unknown 1 0.500231643909243 1 0.999536712181514 hm5C_site_16651 DeepMRMD:1;iRNA_m5C:0.999536712181514 16652 chrX 73040640 73040640 1 + G C rs369296409 73040659 - 73040639 73040679 41 AAGACTCTTGAACTTGTGAACTGATGTGAAATGCAGAATCT AAGACTCTTGAACTTGTGAACTGATGTGAAATGCAGAATGT < 41bp 1 0.153114316388676 1 0.134533315896988 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040659 chrX:73040640 . . 0 40 hm5C_associated_SNPs_14964 0 0 1 2 0 unknown 1 0.50030947507882 1 0.999381049842359 hm5C_site_16652 DeepMRMD:1;iRNA_m5C:0.999381049842359 16653 chrX 73040911 73040911 1 + T C rs148394722 73040931 - 73040911 73040951 41 AGTAACACCCCTTTCTTCAGCTGGGGATGGGGAATGGATTA AGTAACACCCCTTTCTTCAGCTGGGGATGGGGAATGGATTG < 41bp 1 0.633251951302989 1 0.782095670700073 experiment 0.733496097394022 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040931 chrX:73040911 . . 0 41 hm5C_associated_SNPs_14965 0 0 1 0 0 unknown 1 0.500231644448134 0.435808658599854 0.999536711103731 hm5C_site_16653 DeepMRMD:0.435808658599854;iRNA_m5C:0.999536711103731 16654 chrX 73042022 73042022 1 + A C rs780532376 73042026 - 73042006 73042046 41 CCCTCATGAAAAATGACTGACCACTGCTGGGCAGCAGGAGG CCCTCATGAAAAATGACTGACCACGGCTGGGCAGCAGGAGG < 41bp 1 0.116464365682529 1 0.158545911312103 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042026 chrX:73042022 . . 0 25 hm5C_associated_SNPs_14966 0 0 1 2 0 unknown 1 0.500231647455389 1 0.999536705089222 hm5C_site_16654 DeepMRMD:1;iRNA_m5C:0.999536705089222 16655 chrX 73042916 73042916 1 + T C rs5982487 73042925 - 73042905 73042945 41 GTATTTGCTCATTGGTCTGGCTTAGAGACAGGAAGACATAT GTATTTGCTCATTGGTCTGGCTTAGAGACGGGAAGACATAT < 41bp 1 0.0534747736036175 1 0.0647725760936737 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042925 chrX:73042916 . . 0 30 hm5C_associated_SNPs_14967 0 0 1 1 0 unknown 1 0.500231643921083 1 0.999536712157834 hm5C_site_16655 DeepMRMD:1;iRNA_m5C:0.999536712157834 16656 chrX 73042916 73042916 1 + T C rs5982487 73042929 - 73042909 73042949 41 AAAGGTATTTGCTCATTGGTCTGGCTTAGAGACAGGAAGAC AAAGGTATTTGCTCATTGGTCTGGCTTAGAGACGGGAAGAC < 41bp 1 0.196617765038959 1 0.298234760761261 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042929 chrX:73042916 . . 0 34 hm5C_associated_SNPs_14968 0 0 1 1 0 unknown 1 0.500231644081753 1 0.999536711836494 hm5C_site_16656 DeepMRMD:1;iRNA_m5C:0.999536711836494 16657 chrX 73043297 73043297 1 + G A rs138595829 73043299 - 73043279 73043319 41 GAGAGATGAGGGCATTAGATCACTGACAGCTGAAGATAGAA GAGAGATGAGGGCATTAGATCATTGACAGCTGAAGATAGAA < 41bp 1 0.053552669303959 1 0.0774983167648315 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043299 chrX:73043297 . . 0 23 hm5C_associated_SNPs_14969 0 0 1 0 0 unknown 1 0.50023099327701 1 0.999538013445981 hm5C_site_16657 DeepMRMD:1;iRNA_m5C:0.999538013445981 16658 chrX 73043297 73043297 1 + G A rs138595829 73043307 - 73043287 73043327 41 GAGGATAAGAGAGATGAGGGCATTAGATCACTGACAGCTGA GAGGATAAGAGAGATGAGGGCATTAGATCATTGACAGCTGA < 41bp 1 0.0832670765911892 1 0.104824423789978 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043307 chrX:73043297 . . 0 31 hm5C_associated_SNPs_14970 0 0 1 0 0 unknown 1 0.500231643921332 1 0.999536712157336 hm5C_site_16658 DeepMRMD:1;iRNA_m5C:0.999536712157336 16659 chrX 73043734 73043734 1 + G T rs144341862 73043732 - 73043712 73043752 41 GGGGCTCGGAACTACATGCCCTAGGATATAAAAATGATGTT GGGGCTCGGAACTACATGACCTAGGATATAAAAATGATGTT < 41bp 1 0.359590025680592 1 0.468106210231781 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043732 chrX:73043734 . . 0 19 hm5C_associated_SNPs_14971 0 0 1 1 0 unknown 1 0.500231643943813 1 0.999536712112373 hm5C_site_16659 DeepMRMD:1;iRNA_m5C:0.999536712112373 16660 chrX 73043734 73043734 1 + G T rs144341862 73043738 - 73043718 73043758 41 TTCTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAAT TTCTGTGGGGCTCGGAACTACATGACCTAGGATATAAAAAT < 41bp 1 0.217445037533946 1 0.179369360208511 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043738 chrX:73043734 . . 0 25 hm5C_associated_SNPs_14972 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16660 DeepMRMD:1;iRNA_m5C:0.999536712157815 16661 chrX 73043734 73043734 1 + G T rs144341862 73043746 - 73043726 73043766 41 TGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGGAT TGATTACTTTCTGTGGGGCTCGGAACTACATGACCTAGGAT < 41bp 1 0.28072896372957 1 0.768303096294403 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043746 chrX:73043734 . . 0 33 hm5C_associated_SNPs_14973 0 0 1 1 0 unknown 1 0.50023164392112 0.463393807411194 0.999536712157761 hm5C_site_16661 DeepMRMD:0.463393807411194;iRNA_m5C:0.999536712157761 16662 chrX 73043734 73043734 1 + G T rs144341862 73043748 - 73043728 73043768 41 GGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGG GGTGATTACTTTCTGTGGGGCTCGGAACTACATGACCTAGG < 41bp 1 0.241036621025157 1 0.280334413051605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043748 chrX:73043734 . . 0 35 hm5C_associated_SNPs_14974 0 0 1 1 0 unknown 1 0.500231643919406 1 0.999536712161189 hm5C_site_16662 DeepMRMD:1;iRNA_m5C:0.999536712161189 16663 chrX 73043793 73043793 1 + C T rs148757364 73043778 - 73043758 73043798 41 AGATAGGAATGAACTATTGGCTTACTGAATGGTGATTACTT AGATAAGAATGAACTATTGGCTTACTGAATGGTGATTACTT < 41bp 1 0.0206443823419456 1 0.034942090511322 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043778 chrX:73043793 . . 0 6 hm5C_associated_SNPs_14975 0 0 1 0 0 unknown 1 0.500231643888258 1 0.999536712223483 hm5C_site_16663 DeepMRMD:1;iRNA_m5C:0.999536712223483 16664 chrX 73043798 73043798 1 + T C rs141214761 73043778 - 73043758 73043798 41 AGATAGGAATGAACTATTGGCTTACTGAATGGTGATTACTT GGATAGGAATGAACTATTGGCTTACTGAATGGTGATTACTT < 41bp 1 0.0222254448452573 1 0.0367239713668823 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043778 chrX:73043798 . . 0 1 hm5C_associated_SNPs_14976 0 0 1 0 0 unknown 1 0.500231643561245 1 0.99953671287751 hm5C_site_16664 DeepMRMD:1;iRNA_m5C:0.99953671287751 16665 chrX 73045232 73045232 1 + C G rs41305401 73045215 - 73045195 73045235 41 TGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATAA TGTCATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATAA < 41bp 1 0.332413124742665 1 0.443327456712723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045215 chrX:73045232 . . 0 4 hm5C_associated_SNPs_14977 0 0 1 2 0 unknown 1 0.500231450566634 1 0.999537098866733 hm5C_site_16665 DeepMRMD:1;iRNA_m5C:0.999537098866733 16666 chrX 73045740 73045740 1 + A C rs1794213 73045745 - 73045725 73045765 41 GAGAACCTGGGACTGTTGAGCATGTTTAATACTTTCCTTGA GAGAACCTGGGACTGTTGAGCATGTGTAATACTTTCCTTGA < 41bp 1 0.172592278600284 1 0.80276894569397 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045745 chrX:73045740 . . 0 26 hm5C_associated_SNPs_14978 0 0 1 1 0 unknown 1 0.500231643943849 0.39446210861206 0.999536712112302 hm5C_site_16666 DeepMRMD:0.39446210861206;iRNA_m5C:0.999536712112302 16667 chrX 73045740 73045740 1 + A C rs1794213 73045753 - 73045733 73045773 41 AAAGATGAGAGAACCTGGGACTGTTGAGCATGTTTAATACT AAAGATGAGAGAACCTGGGACTGTTGAGCATGTGTAATACT < 41bp 1 0.0410911400807021 1 0.0655647814273834 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045753 chrX:73045740 . . 0 34 hm5C_associated_SNPs_14979 0 0 1 1 0 unknown 1 0.500231643714398 1 0.999536712571203 hm5C_site_16667 DeepMRMD:1;iRNA_m5C:0.999536712571203 16668 chrX 73045740 73045740 1 + A C rs1794213 73045760 - 73045740 73045780 41 TAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGCATGTT TAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGCATGTG < 41bp 1 0.0611199041548954 1 0.164002746343613 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045760 chrX:73045740 . . 0 41 hm5C_associated_SNPs_14980 0 0 1 1 0 unknown 1 0.500231643921101 1 0.999536712157798 hm5C_site_16668 DeepMRMD:1;iRNA_m5C:0.999536712157798 16669 chrX 73045745 73045745 1 + G A rs41303699 73045753 - 73045733 73045773 41 AAAGATGAGAGAACCTGGGACTGTTGAGCATGTTTAATACT AAAGATGAGAGAACCTGGGACTGTTGAGTATGTTTAATACT < 41bp 1 0.0411102432271814 1 0.0990611910820007 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045753 chrX:73045745 . . 0 29 hm5C_associated_SNPs_14981 0 0 1 1 0 unknown 1 0.500231644245881 1 0.999536711508239 hm5C_site_16669 DeepMRMD:1;iRNA_m5C:0.999536711508239 16670 chrX 73045745 73045745 1 + G A rs41303699 73045760 - 73045740 73045780 41 TAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGCATGTT TAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGTATGTT < 41bp 1 0.0395414799265546 1 0.174728631973267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045760 chrX:73045745 . . 0 36 hm5C_associated_SNPs_14982 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16670 DeepMRMD:1;iRNA_m5C:0.999536712157815 16671 chrX 73045801 73045801 1 + G A rs12009304 73045800 - 73045780 73045820 41 GGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT GGACTGTGCCAACGCTACTTCTGGGTTTAATACCCATCTCT < 41bp 1 0.634618315326465 1 0.658986747264862 experiment 0.73076336934707 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045800 chrX:73045801 . . 0 20 hm5C_associated_SNPs_14983 0 0 1 1 0 unknown 1 0.500231643916682 0.682026505470276 0.999536712166637 hm5C_site_16671 DeepMRMD:0.682026505470276;iRNA_m5C:0.999536712166637 16672 chrX 73045801 73045801 1 + G A rs12009304 73045803 - 73045783 73045823 41 GGTGGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC GGTGGACTGTGCCAACGCTACTTCTGGGTTTAATACCCATC < 41bp 1 0.124097249948534 1 0.0926186442375183 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045803 chrX:73045801 . . 0 23 hm5C_associated_SNPs_14984 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16672 DeepMRMD:1;iRNA_m5C:0.999536712157815 16673 chrX 73045801 73045801 1 + G A rs12009304 73045808 - 73045788 73045828 41 AATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAATAC AATTTGGTGGACTGTGCCAACGCTACTTCTGGGTTTAATAC < 41bp 1 0.381315971458235 1 0.0799453258514404 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045808 chrX:73045801 . . 0 28 hm5C_associated_SNPs_14985 0 0 1 1 0 unknown 1 0.500231643920713 1 0.999536712158574 hm5C_site_16673 DeepMRMD:1;iRNA_m5C:0.999536712158574 16674 chrX 73045801 73045801 1 + G A rs12009304 73045811 - 73045791 73045831 41 AATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAA AATAATTTGGTGGACTGTGCCAACGCTACTTCTGGGTTTAA < 41bp 1 0.293926615467813 1 0.563978016376495 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045811 chrX:73045801 . . 0 31 hm5C_associated_SNPs_14986 0 0 1 1 0 unknown 1 0.500231634451836 0.87204396724701 0.999536731096328 hm5C_site_16674 DeepMRMD:0.87204396724701;iRNA_m5C:0.999536731096328 16675 chrX 73045801 73045801 1 + G A rs12009304 73045812 - 73045792 73045832 41 AAATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTA AAATAATTTGGTGGACTGTGCCAACGCTACTTCTGGGTTTA < 41bp 1 0.0435938466465326 1 0.197122812271118 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045812 chrX:73045801 . . 0 32 hm5C_associated_SNPs_14987 0 0 1 1 0 unknown 1 0.50023164392005 1 0.9995367121599 hm5C_site_16675 DeepMRMD:1;iRNA_m5C:0.9995367121599 16676 chrX 73045807 73045807 1 + C T rs180926896 73045800 - 73045780 73045820 41 GGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT GGACTGTGCCAACACTACTCCTGGGTTTAATACCCATCTCT < 41bp 1 0.51117343076411 1 0.557793200016022 experiment 0.977653138471781 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045800 chrX:73045807 . . 0 14 hm5C_associated_SNPs_14988 0 0 1 1 0 unknown 1 0.500231643895995 0.884413599967956 0.99953671220801 hm5C_site_16676 DeepMRMD:0.884413599967956;iRNA_m5C:0.99953671220801 16677 chrX 73045807 73045807 1 + C T rs180926896 73045803 - 73045783 73045823 41 GGTGGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC GGTGGACTGTGCCAACACTACTCCTGGGTTTAATACCCATC < 41bp 1 0.337421386664246 1 0.198671340942383 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045803 chrX:73045807 . . 0 17 hm5C_associated_SNPs_14989 0 0 1 1 0 unknown 1 0.500231641821988 1 0.999536716356024 hm5C_site_16677 DeepMRMD:1;iRNA_m5C:0.999536716356024 16678 chrX 73045807 73045807 1 + C T rs180926896 73045808 - 73045788 73045828 41 AATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAATAC AATTTGGTGGACTGTGCCAACACTACTCCTGGGTTTAATAC < 41bp 1 0.350942281124576 1 0.0360265076160431 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045808 chrX:73045807 . . 0 22 hm5C_associated_SNPs_14990 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16678 DeepMRMD:1;iRNA_m5C:0.999536712157815 16679 chrX 73045807 73045807 1 + C T rs180926896 73045811 - 73045791 73045831 41 AATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAA AATAATTTGGTGGACTGTGCCAACACTACTCCTGGGTTTAA < 41bp 1 0.45546575616072 1 0.400877863168716 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045811 chrX:73045807 . . 0 25 hm5C_associated_SNPs_14991 0 0 1 1 0 unknown 1 0.500231643809688 1 0.999536712380624 hm5C_site_16679 DeepMRMD:1;iRNA_m5C:0.999536712380624 16680 chrX 73045807 73045807 1 + C T rs180926896 73045812 - 73045792 73045832 41 AAATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTA AAATAATTTGGTGGACTGTGCCAACACTACTCCTGGGTTTA < 41bp 1 0.0314470005245026 1 0.17556357383728 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045812 chrX:73045807 . . 0 26 hm5C_associated_SNPs_14992 0 0 1 1 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_16680 DeepMRMD:1;iRNA_m5C:0.999536712157818 16681 chrX 73045809 73045809 1 + T C rs16992442 73045800 - 73045780 73045820 41 GGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT GGACTGTGCCAGCGCTACTCCTGGGTTTAATACCCATCTCT < 41bp 1 0.632270059121515 1 0.589413940906525 experiment 0.735459881756969 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045800 chrX:73045809 . . 0 12 hm5C_associated_SNPs_14993 0 0 1 3 0 unknown 1 0.50023164392105 0.82117211818695 0.9995367121579 hm5C_site_16681 DeepMRMD:0.82117211818695;iRNA_m5C:0.9995367121579 16682 chrX 73045809 73045809 1 + T C rs16992442 73045803 - 73045783 73045823 41 GGTGGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC GGTGGACTGTGCCAGCGCTACTCCTGGGTTTAATACCCATC < 41bp 1 0.300529048092497 1 0.32965612411499 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045803 chrX:73045809 . . 0 15 hm5C_associated_SNPs_14994 0 0 1 3 0 unknown 1 0.500231642484966 1 0.999536715030068 hm5C_site_16682 DeepMRMD:1;iRNA_m5C:0.999536715030068 16683 chrX 73045809 73045809 1 + T C rs16992442 73045808 - 73045788 73045828 41 AATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAATAC AATTTGGTGGACTGTGCCAGCGCTACTCCTGGGTTTAATAC < 41bp 1 0.38012652306919 1 0.0703544318675995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045808 chrX:73045809 . . 0 20 hm5C_associated_SNPs_14995 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16683 DeepMRMD:1;iRNA_m5C:0.999536712157815 16684 chrX 73045809 73045809 1 + T C rs16992442 73045811 - 73045791 73045831 41 AATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAA AATAATTTGGTGGACTGTGCCAGCGCTACTCCTGGGTTTAA < 41bp 1 0.472955054461466 1 0.680680096149445 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045811 chrX:73045809 . . 0 23 hm5C_associated_SNPs_14996 0 0 1 3 0 unknown 1 0.500231643532317 0.63863980770111 0.999536712935366 hm5C_site_16684 DeepMRMD:0.63863980770111;iRNA_m5C:0.999536712935366 16685 chrX 73045809 73045809 1 + T C rs16992442 73045812 - 73045792 73045832 41 AAATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTA AAATAATTTGGTGGACTGTGCCAGCGCTACTCCTGGGTTTA < 41bp 1 0.1016179505465 1 0.48116534948349 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045812 chrX:73045809 . . 0 24 hm5C_associated_SNPs_14997 0 0 1 3 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_16685 DeepMRMD:1;iRNA_m5C:0.999536712157815 16686 chrX 73046038 73046038 1 + C T rs148867747 73046036 - 73046016 73046056 41 TGTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAG TGTGAAGAGATGCTCCAGACCAATGAGAAGAATTAGACAAG < 41bp 1 0.137413099717597 1 0.194092154502869 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046036 chrX:73046038 . . 0 19 hm5C_associated_SNPs_14998 0 0 1 0 0 unknown 1 0.500231643916395 1 0.999536712167209 hm5C_site_16686 DeepMRMD:1;iRNA_m5C:0.999536712167209 16687 chrX 73046556 73046556 1 + C T rs151282405 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACAGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA < 41bp 1 0.0689809620922822 1 0.248574733734131 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046556 . . 0 4 hm5C_associated_SNPs_14999 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_16687 DeepMRMD:1;iRNA_m5C:0.999536712157815 16688 chrX 73046557 73046557 1 + G A rs16992443 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AATGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA < 41bp 1 0.0844669753477662 1 0.156822592020035 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046557 . . 0 3 hm5C_associated_SNPs_15001 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_16688 DeepMRMD:1;iRNA_m5C:0.999536712157815 16689 chrX 73046584 73046584 1 + G A rs183234357 73046568 - 73046548 73046588 41 GACCCAAGCGAAAAAGGTATCTCAAGACTAACGGCCGGAAT GACCTAAGCGAAAAAGGTATCTCAAGACTAACGGCCGGAAT < 41bp 1 0.678402644211613 1 0.70807158946991 experiment 0.643194711576774 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046568 chrX:73046584 . . 0 5 hm5C_associated_SNPs_15003 0 0 1 0 0 unknown 1 0.500231643921093 0.58385682106018 0.999536712157814 hm5C_site_16689 DeepMRMD:0.58385682106018;iRNA_m5C:0.999536712157814 16690 chrX 73046584 73046584 1 + G A rs183234357 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGATAGAGGACCTAAGCGAAAAAGGTATCTCA < 41bp 1 0.190055374460572 1 0.101188719272614 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046584 . . 0 22 hm5C_associated_SNPs_15004 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16690 DeepMRMD:1;iRNA_m5C:0.999536712157815 16691 chrX 73046774 73046774 1 + C A rs191884965 73046754 - 73046734 73046774 41 GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA TTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA < 41bp 1 0.523418005259652 1 0.155743896961212 experiment 0.953163989480696 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046754 chrX:73046774 . . 0 1 hm5C_associated_SNPs_15005 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16691 DeepMRMD:1;iRNA_m5C:0.999536712157815 16692 chrX 73046774 73046774 1 + C A rs191884965 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGGCCTGATTTGGATGGAAGTCTC < 41bp 1 0.304431196502295 1 0.319349765777588 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046774 . . 0 26 hm5C_associated_SNPs_15006 0 0 1 1 0 unknown 1 0.500231643921136 1 0.999536712157729 hm5C_site_16692 DeepMRMD:1;iRNA_m5C:0.999536712157729 16693 chrX 73046774 73046774 1 + C A rs191884965 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCGAAGGCCTGATTTGGATGG < 41bp 1 0.348220354701879 1 0.177191168069839 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046774 . . 0 33 hm5C_associated_SNPs_15007 0 0 1 1 0 unknown 1 0.500231643918334 1 0.999536712163331 hm5C_site_16693 DeepMRMD:1;iRNA_m5C:0.999536712163331 16694 chrX 73047076 73047076 1 + G A rs187945496 73047096 - 73047076 73047116 41 GGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGAAC GGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGAAT < 41bp 1 0.103390809016814 1 0.293791383504868 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047096 chrX:73047076 . . 0 41 hm5C_associated_SNPs_15008 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16694 DeepMRMD:1;iRNA_m5C:0.999536712157815 16695 chrX 82764678 82764678 1 + C G rs147101869 82764658 + 82764638 82764678 41 CTTTCCCCTTCCCTTCCCTTCCCTTCCATCTCTTCCTTTCC CTTTCCCCTTCCCTTCCCTTCCCTTCCATCTCTTCCTTTCG < 41bp 1 0.0594364408021912 1 0.0676649808883667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient POU3F4 ENSG00000196767 UTR3 Human protein_coding chrX:82764658 chrX:82764678 . . 0 41 hm5C_associated_SNPs_15009 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16695 DeepMRMD:1;iRNA_m5C:0.999536712157815 16696 chrX 82764678 82764678 1 + C G rs147101869 82764659 + 82764639 82764679 41 TTTCCCCTTCCCTTCCCTTCCCTTCCATCTCTTCCTTTCCT TTTCCCCTTCCCTTCCCTTCCCTTCCATCTCTTCCTTTCGT < 41bp 1 0.02047946624441 1 0.0762489438056946 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient POU3F4 ENSG00000196767 UTR3 Human protein_coding chrX:82764659 chrX:82764678 . . 0 40 hm5C_associated_SNPs_15010 0 0 0 0 0 unknown 1 0.500231643921512 1 0.999536712156975 hm5C_site_16696 DeepMRMD:1;iRNA_m5C:0.999536712156975 16697 chrX 82764678 82764678 1 + C G rs147101869 82764660 + 82764640 82764680 41 TTCCCCTTCCCTTCCCTTCCCTTCCATCTCTTCCTTTCCTT TTCCCCTTCCCTTCCCTTCCCTTCCATCTCTTCCTTTCGTT < 41bp 1 0.109039861070155 1 0.0341405868530273 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient POU3F4 ENSG00000196767 UTR3 Human protein_coding chrX:82764660 chrX:82764678 . . 0 39 hm5C_associated_SNPs_15011 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16697 DeepMRMD:1;iRNA_m5C:0.999536712157815 16698 chrX 82764678 82764678 1 + C G rs147101869 82764663 + 82764643 82764683 41 CCCTTCCCTTCCCTTCCCTTCCATCTCTTCCTTTCCTTTCC CCCTTCCCTTCCCTTCCCTTCCATCTCTTCCTTTCGTTTCC < 41bp 1 0.0406908360294464 1 0.175853401422501 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient POU3F4 ENSG00000196767 UTR3 Human protein_coding chrX:82764663 chrX:82764678 . . 0 36 hm5C_associated_SNPs_15012 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16698 DeepMRMD:1;iRNA_m5C:0.999536712157815 16699 chrX 82764678 82764678 1 + C G rs147101869 82764664 + 82764644 82764684 41 CCTTCCCTTCCCTTCCCTTCCATCTCTTCCTTTCCTTTCCT CCTTCCCTTCCCTTCCCTTCCATCTCTTCCTTTCGTTTCCT < 41bp 1 0.132299604415714 1 0.227947145700455 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient POU3F4 ENSG00000196767 UTR3 Human protein_coding chrX:82764664 chrX:82764678 . . 0 35 hm5C_associated_SNPs_15013 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16699 DeepMRMD:1;iRNA_m5C:0.999536712157815 16700 chrX 82764678 82764678 1 + C G rs147101869 82764669 + 82764649 82764689 41 CCTTCCCTTCCCTTCCATCTCTTCCTTTCCTTTCCTTTCTT CCTTCCCTTCCCTTCCATCTCTTCCTTTCGTTTCCTTTCTT < 41bp 1 0.171249257476043 1 0.0866662263870239 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient POU3F4 ENSG00000196767 UTR3 Human protein_coding chrX:82764669 chrX:82764678 . . 0 30 hm5C_associated_SNPs_15014 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16700 DeepMRMD:1;iRNA_m5C:0.999536712157815 16701 chrX 100647142 100647142 1 + A G rs190593323 100647138 + 100647118 100647158 41 TTCCTTATCTGTCAATATGTCTGAATCCTCGCTTGTTGGTT TTCCTTATCTGTCAATATGTCTGAGTCCTCGCTTGTTGGTT < 41bp 1 0.480039872863917 1 0.355627238750458 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL36A ENSG00000241343;ENSG00000257529 intronic Human other chrX:100647138 chrX:100647142 . . 0 25 hm5C_associated_SNPs_15015 0 0 1 4 0 chromatin 1 0.500231643775022 1 0.999536712449955 hm5C_site_16701 DeepMRMD:1;iRNA_m5C:0.999536712449955 16702 chrX 102470054 102470054 1 + G A rs3747300 102470063 + 102470043 102470083 41 GTCTCGCTCTGGCGTCAGAGCCGTCGTGGCTCGTTCCATTC GTCTCGCTCTGACGTCAGAGCCGTCGTGGCTCGTTCCATTC < 41bp 1 0.304646735262934 1 0.107858449220657 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BEX4 ENSG00000102409 UTR5 Human protein_coding chrX:102470063 chrX:102470054 . . 0 12 hm5C_associated_SNPs_15016 0 0 1 0 0 exosome 1 0.500231643169523 1 0.999536713660954 hm5C_site_16702 DeepMRMD:1;iRNA_m5C:0.999536713660954 16703 chrX 103434399 103434399 1 + G A rs140348929 103434382 + 103434362 103434402 41 GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAGGTG GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAAGTG < 41bp 1 0.276997405047127 1 0.0659781694412231 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103434382 chrX:103434399 synonymous SNV . 0 38 hm5C_associated_SNPs_15017 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_16703 DeepMRMD:1;iRNA_m5C:0.999536712157815 16704 chrX 105881556 105881556 1 + G A rs5962706 105881547 + 105881527 105881567 41 CTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCA CTGTCGCCCAGGCTGGAGTGCAGTGGCGGAATCTCGGCTCA < 41bp 1 0.680806889494897 1 0.21606832742691 experiment 0.638386221010205 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CXorf57 ENSG00000147231 UTR3 Human protein_coding chrX:105881547 chrX:105881556 . . 0 30 hm5C_associated_SNPs_15018 0 0 0 0 0 nucleus 1 0.500231647253192 1 0.999536705493617 hm5C_site_16704 DeepMRMD:1;iRNA_m5C:0.999536705493617 16705 chrX 106893247 106893247 1 + C T rs147731055 106893248 + 106893228 106893268 41 CCGTTTCTTACCTATTCAGCCATGTCCCTTTATAATAGAGT CCGTTTCTTACCTATTCAGTCATGTCCCTTTATAATAGAGT < 41bp 1 0.068655392456067 1 0.106963068246841 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893248 chrX:106893247 synonymous SNV . 0 20 hm5C_associated_SNPs_15019 2 0 1 0 1 Ribosome 1 0.500231644051311 1 0.999536711897379 hm5C_site_16705 DeepMRMD:1;iRNA_m5C:0.999536711897379 not specified not specified 16706 chrX 106893247 106893247 1 + C T rs147731055 106893253 + 106893233 106893273 41 TCTTACCTATTCAGCCATGTCCCTTTATAATAGAGTAACTT TCTTACCTATTCAGTCATGTCCCTTTATAATAGAGTAACTT < 41bp 1 0.0786226963761706 1 0.0585769414901733 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893253 chrX:106893247 synonymous SNV . 0 15 hm5C_associated_SNPs_15020 2 0 1 0 1 Ribosome 1 0.500231643920951 1 0.999536712158098 hm5C_site_16706 DeepMRMD:1;iRNA_m5C:0.999536712158098 not specified not specified 16707 chrX 107321029 107321029 1 + C T rs41306277 107321036 + 107321016 107321056 41 CAACCTCCGCTCCCTGGGTTCAAGCGATTCTCCTGCCTGAG CAACCTCCGCTCCTTGGGTTCAAGCGATTCTCCTGCCTGAG < 41bp 1 0.650257528371382 1 0.211970895528793 experiment 0.699484943257237 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VSIG1 ENSG00000101842 UTR3 Human protein_coding chrX:107321036 chrX:107321029 . . 0 14 hm5C_associated_SNPs_15021 0 0 0 0 0 Nucleus 1 0.50023164392228 1 0.999536712155439 hm5C_site_16707 DeepMRMD:1;iRNA_m5C:0.999536712155439 16708 chrX 107321029 107321029 1 + C T rs41306277 107321040 + 107321020 107321060 41 CTCCGCTCCCTGGGTTCAAGCGATTCTCCTGCCTGAGCCTC CTCCGCTCCTTGGGTTCAAGCGATTCTCCTGCCTGAGCCTC < 41bp 1 0.505696051826317 1 0.149873465299606 experiment 0.988607896347366 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VSIG1 ENSG00000101842 UTR3 Human protein_coding chrX:107321040 chrX:107321029 . . 0 10 hm5C_associated_SNPs_15022 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16708 DeepMRMD:1;iRNA_m5C:0.999536712157815 16709 chrX 107321029 107321029 1 + C T rs41306277 107321047 + 107321027 107321067 41 CCCTGGGTTCAAGCGATTCTCCTGCCTGAGCCTCCTGAGTA CCTTGGGTTCAAGCGATTCTCCTGCCTGAGCCTCCTGAGTA < 41bp 1 0.573695021247498 1 0.0596708357334137 experiment 0.852609957505003 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VSIG1 ENSG00000101842 UTR3 Human protein_coding chrX:107321047 chrX:107321029 . . 0 3 hm5C_associated_SNPs_15023 0 0 0 0 0 Nucleus 1 0.500231643862607 1 0.999536712274786 hm5C_site_16709 DeepMRMD:1;iRNA_m5C:0.999536712274786 16710 chrX 107834411 107834411 1 + C A rs142883891 107834422 + 107834402 107834442 41 AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT AGCCTGGGGATCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT < 41bp 1 0.599465874889599 1 0.877705752849579 experiment 0.801068250220802 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107834422 chrX:107834411 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_15024 2 0 1 0 1 Ribosome 1 0.500231643921092 0.244588494300842 0.999536712157815 hm5C_site_16710 DeepMRMD:0.244588494300842;iRNA_m5C:0.999536712157815 not specified not specified 16711 chrX 117480443 117480443 1 + C G rs560696220 117480445 + 117480425 117480465 41 CCAGGCGGCGCCGGCCCCCTCACCCGCGGGTGTGTCCTATA CCAGGCGGCGCCGGCCCCGTCACCCGCGGGTGTGTCCTATA < 41bp 1 0.659428861368114 1 0.520803332328796 experiment 0.681142277263772 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR44 ENSG00000131725 UTR5 Human protein_coding chrX:117480445 chrX:117480443 . . 0 19 hm5C_associated_SNPs_15026 0 0 0 0 0 Ribosome 1 0.499943610079047 0.958393335342408 1 hm5C_site_16711 DeepMRMD:0.958393335342408;iRNA_m5C:1 16712 chrX 118602448 118602448 1 + C A rs765328027 118602468 + 118602448 118602488 41 CGTCCTGCAGCAGTCTGCCTCCTCTTTCAACATGACAGATG AGTCCTGCAGCAGTCTGCCTCCTCTTTCAACATGACAGATG < 41bp 1 0.407015477436063 1 0.15003889799118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC25A5-AS1 ENSG00000224281 ncRNA_exonic Human processed_transcript chrX:118602468 chrX:118602448 . . 0 1 hm5C_associated_SNPs_15027 0 0 1 0 0 unknown 1 0.504770927177789 1 0.990458145644423 hm5C_site_16712 DeepMRMD:1;iRNA_m5C:0.990458145644423 16713 chrX 123046787 123046787 1 + C T rs149254603 123046781 + 123046761 123046801 41 GCTGGGATTACAGGCGTGAGCCACCACGGCCGGCTAATTTT GCTGGGATTACAGGCGTGAGCCACCATGGCCGGCTAATTTT < 41bp 1 0.58777845003217 1 0.113993018865585 experiment 0.824443099935661 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control XIAP ENSG00000101966 UTR3 Human protein_coding chrX:123046781 chrX:123046787 . . 0 27 hm5C_associated_SNPs_15028 1 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16713 DeepMRMD:1;iRNA_m5C:0.999536712157815 Lymphoproliferative syndrome Lymphoproliferative syndrome 16714 chrX 128691328 128691328 1 + G C rs753369725 128691345 + 128691325 128691365 41 GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA GGGCACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA < 41bp 1 0.353916578071219 1 0.0554416477680206 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128691345 chrX:128691328 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_15029 0 0 1 0 2 Cytosol 1 0.500231640161173 1 0.999536719677653 hm5C_site_16714 DeepMRMD:1;iRNA_m5C:0.999536719677653 16715 chrX 128695228 128695228 1 + G A rs138260625 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACAAGAATGGTCCATAGCTGTAGAGAGAGGTT < 41bp 1 0.130548622459759 1 0.0388039350509644 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695228 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_15030 2 0 1 0 2 Cytosol 1 0.500240405060036 1 0.999519189879927 hm5C_site_16715 DeepMRMD:1;iRNA_m5C:0.999519189879927 not provided not provided 16716 chrX 128695243 128695243 1 + T G rs190659938 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGGT < 41bp 1 0.0732192745539036 1 0.110553532838821 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695243 synonymous SNV . 0 40 hm5C_associated_SNPs_15031 0 0 1 0 2 Cytosol 1 0.500236959485865 1 0.999526081028269 hm5C_site_16716 DeepMRMD:1;iRNA_m5C:0.999526081028269 16717 chrX 129149417 129149417 1 + G A rs201843717 129149429 + 129149409 129149449 41 GCAACCACGGCCTGGGGGCTCCTTCGTTCCAGAGCAGGACC GCAACCACAGCCTGGGGGCTCCTTCGTTCCAGAGCAGGACC < 41bp 1 0.0207804451983159 1 0.145901262760162 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129149429 chrX:129149417 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_15032 1 0 1 0 0 Cytosol 1 0.500231643961201 1 0.999536712077598 hm5C_site_16717 DeepMRMD:1;iRNA_m5C:0.999536712077598 not specified not specified 16718 chrX 129185892 129185892 1 + A C rs373569866 129185891 + 129185871 129185911 41 ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG ATCCTCCTGGGAGCTCAGATCCAGAAGGAGACGATCCGATG < 41bp 1 0.459406910540981 1 0.796919226646423 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185891 chrX:129185892 nonsynonymous SNV 0.974 2 22 hm5C_associated_SNPs_15033 0 0 1 0 2 Cytosol 1 0.500231648428421 0.406161546707154 0.999536703143157 hm5C_site_16718 DeepMRMD:0.406161546707154;iRNA_m5C:0.999536703143157 16719 chrX 129535961 129535961 1 + C T rs16999683 129535973 + 129535953 129535993 41 TGCGCTGCCTTTCCCGGGCGCTGATTCCTGAGTGCTGAGCG TGCGCTGCTTTTCCCGGGCGCTGATTCCTGAGTGCTGAGCG < 41bp 1 0.445570825907064 1 0.0220198035240173 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBMX2 ENSG00000134597 UTR5 Human protein_coding chrX:129535973 chrX:129535961 . . 0 9 hm5C_associated_SNPs_15034 0 0 1 0 1 exosome 1 0.50023164584827 1 0.99953670830346 hm5C_site_16719 DeepMRMD:1;iRNA_m5C:0.99953670830346 16720 chrX 129629792 129629792 1 + C T rs200183219 129629789 + 129629769 129629809 41 CTTCACTCTTACGTGCACCTCAACGCCGATGAGCTGGAAGC CTTCACTCTTACGTGCACCTCAATGCCGATGAGCTGGAAGC < 41bp 1 0.359869919494305 1 0.0729672014713287 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM45BP ENSG00000221930 ncRNA_exonic Human transcribed_processed_pseudogene chrX:129629789 chrX:129629792 . . 0 24 hm5C_associated_SNPs_15035 0 0 0 0 0 unknown 1 0.500231643807068 1 0.999536712385865 hm5C_site_16720 DeepMRMD:1;iRNA_m5C:0.999536712385865 16721 chrX 131202543 131202543 1 + A T rs569986933 131202534 + 131202514 131202554 41 ACACAGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG ACACAGATTAAAAGAAATACCTTTGTGGGTACTCCATTTTG < 41bp 1 0.343573461397665 1 0.0295723378658295 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK26 ENSG00000134602 CDS Human protein_coding chrX:131202534 chrX:131202543 synonymous SNV . 0 30 hm5C_associated_SNPs_15036 0 0 1 0 1 Ribosome 1 0.500231643917009 1 0.999536712165983 hm5C_site_16721 DeepMRMD:1;iRNA_m5C:0.999536712165983 16722 chrX 133594293 133594293 1 + C G rs747134233 133594312 + 133594292 133594332 41 ACCGGCTTCCTCCTCCTGAGCAGTCAGCCCGCGCGCCGGCC AGCGGCTTCCTCCTCCTGAGCAGTCAGCCCGCGCGCCGGCC < 41bp 1 0.558826215456604 1 0.19597589969635 experiment 0.882347569086791 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HPRT1 ENSG00000165704 UTR5 Human protein_coding chrX:133594312 chrX:133594293 . . 0 2 hm5C_associated_SNPs_15037 0 0 1 0 1 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_16722 DeepMRMD:1;iRNA_m5C:0.999536712157818 16723 chrX 133594321 133594321 1 + C A rs776633368 133594312 + 133594292 133594332 41 ACCGGCTTCCTCCTCCTGAGCAGTCAGCCCGCGCGCCGGCC ACCGGCTTCCTCCTCCTGAGCAGTCAGCCAGCGCGCCGGCC < 41bp 1 0.56193486718135 1 0.133972853422165 experiment 0.876130265637301 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HPRT1 ENSG00000165704 UTR5 Human protein_coding chrX:133594312 chrX:133594321 . . 0 30 hm5C_associated_SNPs_15038 0 0 1 0 1 Cytosol 1 0.500231643921083 1 0.999536712157833 hm5C_site_16723 DeepMRMD:1;iRNA_m5C:0.999536712157833 16724 chrX 135067814 135067814 1 + A G rs782090744 135067817 + 135067797 135067837 41 GGCGGCGGAGAGGCTAGAGCCATGGACGAGGAGATCGTGTC GGCGGCGGAGAGGCTAGGGCCATGGACGAGGAGATCGTGTC < 41bp 1 0.645595124476043 1 0.715415716171265 experiment 0.708809751047915 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135067817 chrX:135067814 synonymous SNV . 0 18 hm5C_associated_SNPs_15040 1 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.56916856765747 0.999536712157815 hm5C_site_16724 DeepMRMD:0.56916856765747;iRNA_m5C:0.999536712157815 not specified not specified 16725 chrX 135127228 135127228 1 + G A rs180710014 135127220 + 135127200 135127240 41 CTGACACTTAACCAGAGTACCAGTTCTCGTGATGTGAATTA CTGACACTTAACCAGAGTACCAGTTCTCATGATGTGAATTA < 41bp 1 0.192693090244147 1 0.129339188337326 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC9A6 ENSG00000198689 UTR3 Human protein_coding chrX:135127220 chrX:135127228 . . 0 29 hm5C_associated_SNPs_15041 0 0 1 2 0 Endoplasmic reticulum 1 0.500231648862929 1 0.999536702274141 hm5C_site_16725 DeepMRMD:1;iRNA_m5C:0.999536702274141 16726 chrX 135594255 135594255 1 + C G rs185621465 135594249 + 135594229 135594269 41 GGTAATTACTAGTAGTGTTACATGAACATGTGCATAGTGGT GGTAATTACTAGTAGTGTTACATGAAGATGTGCATAGTGGT < 41bp 1 0.661986711706357 1 0.101607650518417 experiment 0.676026576587287 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTATSF1 ENSG00000102241 UTR3 Human protein_coding chrX:135594249 chrX:135594255 . . 0 27 hm5C_associated_SNPs_15042 0 0 1 1 0 Ribosome 1 0.500231643962018 1 0.999536712075965 hm5C_site_16726 DeepMRMD:1;iRNA_m5C:0.999536712075965 16727 chrX 148628320 148628320 1 + G A rs147733282 148628325 + 148628305 148628345 41 ACTTTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT ACTTTGCAATGCCCCAAAGACTTAACTCCCGATGAGGTTGT < 41bp 1 0.379876449291984 1 0.12390124797821 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXorf40A ENSG00000197620 CDS Human protein_coding chrX:148628325 chrX:148628320 nonsynonymous SNV 0.004 1 16 hm5C_associated_SNPs_15044 0 0 0 0 1 Ribosome 1 0.500231643921105 1 0.999536712157791 hm5C_site_16727 DeepMRMD:1;iRNA_m5C:0.999536712157791 16728 chrX 149896168 149896168 1 + A G rs138576798 149896183 + 149896163 149896203 41 ATTTTATCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG ATTTTGTCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG < 41bp 1 0.326783293063526 1 0.0384005606174469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149896183 chrX:149896168 nonsynonymous SNV 0.943 1 6 hm5C_associated_SNPs_15045 0 0 1 0 2 Ribosome 1 0.500232011594192 1 0.999535976811617 hm5C_site_16728 DeepMRMD:1;iRNA_m5C:0.999535976811617 16729 chrX 150565702 150565702 1 + C T rs188254053 150565692 + 150565672 150565712 41 ACCGCTACTTCCGGTGCGAACCGCCTCGGCCGTTCCCTCGC ACCGCTACTTCCGGTGCGAACCGCCTCGGCTGTTCCCTCGC < 41bp 1 0.628563727146466 1 0.270371913909912 experiment 0.742872545707068 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VMA21 ENSG00000160131 UTR5 Human protein_coding chrX:150565692 chrX:150565702 . . 0 31 hm5C_associated_SNPs_15046 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_16729 DeepMRMD:1;iRNA_m5C:0.999536712157815 16730 chrX 151806802 151806802 1 + A G rs183563437 151806795 + 151806775 151806815 41 TGCCCGAAGTCGTCCTGAACCTCTTCAACTGGTAAGCGGGC TGCCCGAAGTCGTCCTGAACCTCTTCAGCTGGTAAGCGGGC < 41bp 1 0.355874269292224 1 0.421260297298431 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GABRQ ENSG00000147402 CDS Human other chrX:151806795 chrX:151806802 nonsynonymous SNV 0.992 0 28 hm5C_associated_SNPs_15048 0 0 0 0 1 chromatin 1 0.500233369569011 1 0.999533260861978 hm5C_site_16730 DeepMRMD:1;iRNA_m5C:0.999533260861978 16731 chrX 152037431 152037431 1 + G T rs139186585 152037426 + 152037406 152037446 41 GCCCCCAAGTACCACATCCCCTACTGGGTGGCCTACTACCT GCCCCCAAGTACCACATCCCCTACTTGGTGGCCTACTACCT < 41bp 1 0.49406477287083 1 0.0275346636772156 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSDHL ENSG00000147383 CDS Human protein_coding chrX:152037426 chrX:152037431 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_15049 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_16731 DeepMRMD:1;iRNA_m5C:0.999536712157817 16732 chrX 152616081 152616081 1 + G A rs56076412 152616074 + 152616054 152616094 41 GGCCTGGCAAGGAAGTGTGCCCTTCTCGTGGGCCCACCAAG GGCCTGGCAAGGAAGTGTGCCCTTCTCATGGGCCCACCAAG < 41bp 1 0.0449157620145285 1 0.0215712189674377 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF275 ENSG00000063587 UTR3 Human protein_coding chrX:152616074 chrX:152616081 . . 0 28 hm5C_associated_SNPs_15050 0 0 1 0 0 Ribosome 1 0.500231643934482 1 0.999536712131036 hm5C_site_16732 DeepMRMD:1;iRNA_m5C:0.999536712131036 16733 chrX 152954116 152954116 1 + G A rs782373793 152954118 + 152954098 152954138 41 CGCGCCCGGGCCCGACGGGGCCCCGGCCAAGGGCGACGGCC CGCGCCCGGGCCCGACGGAGCCCCGGCCAAGGGCGACGGCC < 41bp 1 0.419936112431863 1 0.252965152263641 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152954118 chrX:152954116 synonymous SNV . 0 19 hm5C_associated_SNPs_15051 1 0 1 0 0 Ribosome 1 0.500231080670183 1 0.999537838659634 hm5C_site_16733 DeepMRMD:1;iRNA_m5C:0.999537838659634 not specified not specified 16734 chrX 152954116 152954116 1 + G A rs782373793 152954119 + 152954099 152954139 41 GCGCCCGGGCCCGACGGGGCCCCGGCCAAGGGCGACGGCCC GCGCCCGGGCCCGACGGAGCCCCGGCCAAGGGCGACGGCCC < 41bp 1 0.682537941725131 1 0.315885692834854 experiment 0.634924116549738 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152954119 chrX:152954116 synonymous SNV . 0 18 hm5C_associated_SNPs_15052 1 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16734 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 16735 chrX 152990702 152990702 1 + C T rs782004770 152990684 + 152990664 152990704 41 CTCAACTGCTGCCCCAGGCACCAGCCCCAGTCCCTACGCGG CTCAACTGCTGCCCCAGGCACCAGCCCCAGTCCCTACGTGG < 41bp 1 0.34512028073048 1 0.165131896734238 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABCD1 ENSG00000101986 UTR5 Human protein_coding chrX:152990684 chrX:152990702 . . 0 39 hm5C_associated_SNPs_15053 0 0 0 0 0 nucleolus 1 0.500231643914823 1 0.999536712170355 hm5C_site_16735 DeepMRMD:1;iRNA_m5C:0.999536712170355 16736 chrX 152990702 152990702 1 + C T rs782004770 152990685 + 152990665 152990705 41 TCAACTGCTGCCCCAGGCACCAGCCCCAGTCCCTACGCGGC TCAACTGCTGCCCCAGGCACCAGCCCCAGTCCCTACGTGGC < 41bp 1 0.4694461450429 1 0.548324942588806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABCD1 ENSG00000101986 UTR5 Human protein_coding chrX:152990685 chrX:152990702 . . 0 38 hm5C_associated_SNPs_15054 0 0 0 0 0 nucleolus 1 0.500231643921092 0.903350114822388 0.999536712157815 hm5C_site_16736 DeepMRMD:0.903350114822388;iRNA_m5C:0.999536712157815 16737 chrX 152991417 152991417 1 + G A rs147595334 152991420 + 152991400 152991440 41 TACACCCTGCTTCGGGCGGCCCGCTCCCGTGGAGCCGGCAC TACACCCTGCTTCGGGCAGCCCGCTCCCGTGGAGCCGGCAC < 41bp 1 0.197600668034115 1 0.681513249874115 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCD1 ENSG00000101986 CDS Human protein_coding chrX:152991420 chrX:152991417 synonymous SNV . 0 18 hm5C_associated_SNPs_15055 0 0 0 0 0 nucleolus 1 0.500231643921226 0.63697350025177 0.999536712157548 hm5C_site_16737 DeepMRMD:0.63697350025177;iRNA_m5C:0.999536712157548 16738 chrX 153031719 153031719 1 + G A rs12009053 153031732 + 153031712 153031752 41 CGCGGCTGCCTGGCTCTTTCCCCCAGCTGCGGAGGGTTCCT CGCGGCTACCTGGCTCTTTCCCCCAGCTGCGGAGGGTTCCT < 41bp 1 0.302570699085143 1 0.844798445701599 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153031732 chrX:153031719 synonymous SNV . 0 8 hm5C_associated_SNPs_15056 0 0 1 0 0 Endoplasmic reticulum 1 0.500231659109681 0.310403108596802 0.999536681780637 hm5C_site_16738 DeepMRMD:0.310403108596802;iRNA_m5C:0.999536681780637 16739 chrX 153035893 153035893 1 + G A rs73640825 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCAG < 41bp 1 0.0342609112730432 1 0.0872208774089813 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035893 synonymous SNV . 0 40 hm5C_associated_SNPs_15057 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164072676 1 0.99953671854648 hm5C_site_16739 DeepMRMD:1;iRNA_m5C:0.99953671854648 16740 chrX 153238288 153238288 1 + A C rs6655268 153238268 + 153238248 153238288 41 CCCCAGCGAGGCGAGTGAGGCGAAATACCCGTATGGTGATA CCCCAGCGAGGCGAGTGAGGCGAAATACCCGTATGGTGATC < 41bp 1 0.53204074882106 1 0.83087682723999 experiment 0.93591850235788 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM187 ENSG00000177854 UTR5 Human protein_coding chrX:153238268 chrX:153238288 . . 0 41 hm5C_associated_SNPs_15058 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920944 0.33824634552002 0.999536712158112 hm5C_site_16740 DeepMRMD:0.33824634552002;iRNA_m5C:0.999536712158112 16741 chrX 153608120 153608120 1 + C A rs782051850 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA CCAAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA < 41bp 1 0.397354706097639 1 0.108044028282166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608120 synonymous SNV . 0 3 hm5C_associated_SNPs_15059 0 0 1 0 2 Ribosome 1 0.500231701374743 1 0.999536597250514 hm5C_site_16741 DeepMRMD:1;iRNA_m5C:0.999536597250514 16742 chrX 153608120 153608120 1 + C A rs782051850 153608140 + 153608120 153608160 41 CAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA AAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA < 41bp 1 0.245959422634764 1 0.117885857820511 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608140 chrX:153608120 synonymous SNV . 0 1 hm5C_associated_SNPs_15060 0 0 1 0 2 Ribosome 1 0.500231646357775 1 0.99953670728445 hm5C_site_16742 DeepMRMD:1;iRNA_m5C:0.99953670728445 16743 chrX 153626649 153626649 1 + A C rs915941 153626641 + 153626621 153626661 41 CGTCTGACAGAGCGTCCACCCGTCTTCGACAGGACTCTATG CGTCTGACAGAGCGTCCACCCGTCTTCGCCAGGACTCTATG < 41bp 1 0.243203948354332 1 0.11982387304306 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 UTR5 Human protein_coding chrX:153626641 chrX:153626649 . . 0 29 hm5C_associated_SNPs_15061 0 0 1 0 1 Cytosol 1 0.500231643284716 1 0.999536713430568 hm5C_site_16743 DeepMRMD:1;iRNA_m5C:0.999536713430568 16744 chrX 153658754 153658754 1 + C T rs59887267 153658744 + 153658724 153658764 41 CAAACTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCC CAAACTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCC < 41bp 1 0.636218251257012 1 0.634770035743713 experiment 0.727563497485976 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6AP1 ENSG00000071553 UTR3 Human protein_coding chrX:153658744 chrX:153658754 . . 0 31 hm5C_associated_SNPs_15062 0 0 1 0 0 Ribosome 1 0.500231637024002 0.730459928512574 0.999536725951997 hm5C_site_16744 DeepMRMD:0.730459928512574;iRNA_m5C:0.999536725951997 16745 chrX 153658754 153658754 1 + C T rs59887267 153658750 + 153658730 153658770 41 GCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTGTGAG GCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCTGTGAG < 41bp 1 0.377531552726873 1 0.105525821447372 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6AP1 ENSG00000071553 UTR3 Human protein_coding chrX:153658750 chrX:153658754 . . 0 25 hm5C_associated_SNPs_15063 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_16745 DeepMRMD:1;iRNA_m5C:0.999536712157815 16746 chrX 153658754 153658754 1 + C T rs59887267 153658751 + 153658731 153658771 41 CTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTGTGAGG CTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCTGTGAGG < 41bp 1 0.327481799104483 1 0.517914533615112 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6AP1 ENSG00000071553 UTR3 Human protein_coding chrX:153658751 chrX:153658754 . . 0 24 hm5C_associated_SNPs_15064 0 0 1 0 0 Ribosome 1 0.500231625458159 0.964170932769776 0.999536749083682 hm5C_site_16746 DeepMRMD:0.964170932769776;iRNA_m5C:0.999536749083682 16747 chrX 153658754 153658754 1 + C T rs59887267 153658753 + 153658733 153658773 41 GGGATTACAGGCGTGAGCCACCGCGCCCGGCCTGTGAGGGG GGGATTACAGGCGTGAGCCACTGCGCCCGGCCTGTGAGGGG < 41bp 1 0.580809967205209 1 0.72100442647934 experiment 0.838380065589581 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6AP1 ENSG00000071553 UTR3 Human protein_coding chrX:153658753 chrX:153658754 . . 0 22 hm5C_associated_SNPs_15065 0 0 1 0 0 Ribosome 1 0.500231634246325 0.55799114704132 0.99953673150735 hm5C_site_16747 DeepMRMD:0.55799114704132;iRNA_m5C:0.99953673150735 16748 chrX 153658761 153658761 1 + G T rs180677460 153658744 + 153658724 153658764 41 CAAACTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCC CAAACTGCTGGGATTACAGGCGTGAGCCACCGCGCCCTGCC < 41bp 1 0.671313769877633 1 0.549489617347717 experiment 0.657372460244735 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6AP1 ENSG00000071553 UTR3 Human protein_coding chrX:153658744 chrX:153658761 . . 0 38 hm5C_associated_SNPs_15066 0 0 1 0 0 Ribosome 1 0.50023164393974 0.901020765304566 0.99953671212052 hm5C_site_16748 DeepMRMD:0.901020765304566;iRNA_m5C:0.99953671212052 16749 chrX 153658761 153658761 1 + G T rs180677460 153658750 + 153658730 153658770 41 GCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTGTGAG GCTGGGATTACAGGCGTGAGCCACCGCGCCCTGCCTGTGAG < 41bp 1 0.297258857543806 1 0.202165573835373 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6AP1 ENSG00000071553 UTR3 Human protein_coding chrX:153658750 chrX:153658761 . . 0 32 hm5C_associated_SNPs_15067 0 0 1 0 0 Ribosome 1 0.500231645116528 1 0.999536709766943 hm5C_site_16749 DeepMRMD:1;iRNA_m5C:0.999536709766943 16750 chrX 153658761 153658761 1 + G T rs180677460 153658751 + 153658731 153658771 41 CTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTGTGAGG CTGGGATTACAGGCGTGAGCCACCGCGCCCTGCCTGTGAGG < 41bp 1 0.496553146960057 1 0.729472160339355 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6AP1 ENSG00000071553 UTR3 Human protein_coding chrX:153658751 chrX:153658761 . . 0 31 hm5C_associated_SNPs_15068 0 0 1 0 0 Ribosome 1 0.500230906658666 0.54105567932129 0.999538186682667 hm5C_site_16750 DeepMRMD:0.54105567932129;iRNA_m5C:0.999538186682667 16751 chrX 153658761 153658761 1 + G T rs180677460 153658753 + 153658733 153658773 41 GGGATTACAGGCGTGAGCCACCGCGCCCGGCCTGTGAGGGG GGGATTACAGGCGTGAGCCACCGCGCCCTGCCTGTGAGGGG < 41bp 1 0.30328473598926 1 0.428525537252426 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6AP1 ENSG00000071553 UTR3 Human protein_coding chrX:153658753 chrX:153658761 . . 0 29 hm5C_associated_SNPs_15069 0 0 1 0 0 Ribosome 1 0.500231601679216 1 0.999536796641567 hm5C_site_16751 DeepMRMD:1;iRNA_m5C:0.999536796641567 16752 chrX 153658761 153658761 1 + G T rs180677460 153658754 + 153658734 153658774 41 GGATTACAGGCGTGAGCCACCGCGCCCGGCCTGTGAGGGGG GGATTACAGGCGTGAGCCACCGCGCCCTGCCTGTGAGGGGG < 41bp 1 0.543364332779774 1 0.753194272518158 experiment 0.913271334440452 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6AP1 ENSG00000071553 UTR3 Human protein_coding chrX:153658754 chrX:153658761 . . 0 28 hm5C_associated_SNPs_15070 0 0 1 0 0 Ribosome 1 0.500231643921092 0.493611454963684 0.999536712157815 hm5C_site_16752 DeepMRMD:0.493611454963684;iRNA_m5C:0.999536712157815 16753 chrX 153672533 153672533 1 + T C rs782630744 153672547 + 153672527 153672567 41 TGTCGCTGTCGCCGCCGCCGCCGCCCGCCGCCGCCGCCGCC TGTCGCCGTCGCCGCCGCCGCCGCCCGCCGCCGCCGCCGCC < 41bp 1 0.601857527572218 1 0.506554186344147 experiment 0.796284944855564 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM50A ENSG00000071859 UTR5 Human protein_coding chrX:153672547 chrX:153672533 . . 0 7 hm5C_associated_SNPs_15071 0 0 1 0 0 Ribosome 1 0.50023162421164 0.986891627311706 0.99953675157672 hm5C_site_16753 DeepMRMD:0.986891627311706;iRNA_m5C:0.99953675157672 16754 chrX 153672549 153672549 1 + G C rs781870554 153672547 + 153672527 153672567 41 TGTCGCTGTCGCCGCCGCCGCCGCCCGCCGCCGCCGCCGCC TGTCGCTGTCGCCGCCGCCGCCCCCCGCCGCCGCCGCCGCC < 41bp 1 0.458042998687517 1 0.190848410129547 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM50A ENSG00000071859 UTR5 Human protein_coding chrX:153672547 chrX:153672549 . . 0 23 hm5C_associated_SNPs_15072 0 0 1 0 0 Ribosome 1 0.500231643918652 1 0.999536712162696 hm5C_site_16754 DeepMRMD:1;iRNA_m5C:0.999536712162696 16755 chrX 153672558 153672558 1 + C G rs782189682 153672547 + 153672527 153672567 41 TGTCGCTGTCGCCGCCGCCGCCGCCCGCCGCCGCCGCCGCC TGTCGCTGTCGCCGCCGCCGCCGCCCGCCGCGGCCGCCGCC < 41bp 1 0.585509534163391 1 0.588287353515625 experiment 0.828980931673219 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM50A ENSG00000071859 UTR5 Human protein_coding chrX:153672547 chrX:153672558 . . 0 32 hm5C_associated_SNPs_15073 0 0 1 0 0 Ribosome 1 0.500231642778937 0.82342529296875 0.999536714442127 hm5C_site_16755 DeepMRMD:0.82342529296875;iRNA_m5C:0.999536714442127 16756 chrX 153678852 153678852 1 + G C rs192598713 153678864 + 153678844 153678884 41 GGACTCCAGGCACCCGCTCCCCTGCGACCATGCCAGGCACG GGACTCCACGCACCCGCTCCCCTGCGACCATGCCAGGCACG < 41bp 1 0.398342207602665 1 0.521174848079681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM50A ENSG00000071859 UTR3 Human protein_coding chrX:153678864 chrX:153678852 . . 0 9 hm5C_associated_SNPs_15074 0 0 1 0 1 Ribosome 1 0.500231639874936 0.957650303840638 0.999536720250128 hm5C_site_16756 DeepMRMD:0.957650303840638;iRNA_m5C:0.999536720250128 16757 chrX 153678858 153678858 1 + C T rs782244383 153678864 + 153678844 153678884 41 GGACTCCAGGCACCCGCTCCCCTGCGACCATGCCAGGCACG GGACTCCAGGCACCTGCTCCCCTGCGACCATGCCAGGCACG < 41bp 1 0.454697012477006 1 0.464275121688843 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM50A ENSG00000071859 UTR3 Human protein_coding chrX:153678864 chrX:153678858 . . 0 15 hm5C_associated_SNPs_15075 0 0 1 0 1 Ribosome 1 0.500231632493488 1 0.999536735013025 hm5C_site_16757 DeepMRMD:1;iRNA_m5C:0.999536735013025 16758 chrX 153678868 153678868 1 + C T rs183312820 153678864 + 153678844 153678884 41 GGACTCCAGGCACCCGCTCCCCTGCGACCATGCCAGGCACG GGACTCCAGGCACCCGCTCCCCTGTGACCATGCCAGGCACG < 41bp 1 0.54947113315893 1 0.27182948589325 experiment 0.901057733682141 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM50A ENSG00000071859 UTR3 Human protein_coding chrX:153678864 chrX:153678868 . . 0 25 hm5C_associated_SNPs_15076 0 0 1 0 1 Ribosome 1 0.500231643621789 1 0.999536712756423 hm5C_site_16758 DeepMRMD:1;iRNA_m5C:0.999536712756423 16759 chrX 154005148 154005148 1 + G A rs1800533 154005135 + 154005115 154005155 41 AAAAGAGGTAGAATTGGTTTCTGAGTAGTGAAGGCCACTTG AAAAGAGGTAGAATTGGTTTCTGAGTAGTGAAGACCACTTG < 41bp 1 0.623513504554779 1 0.412526071071625 experiment 0.752972990890441 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 UTR3 Human protein_coding chrX:154005135 chrX:154005148 . . 0 34 hm5C_associated_SNPs_15077 1 0 1 0 1 Cytosol 1 0.50023164048406 1 0.99953671903188 hm5C_site_16759 DeepMRMD:1;iRNA_m5C:0.99953671903188 not specified not specified 16760 chrX 154005239 154005239 1 + A G rs7878787 154005227 + 154005207 154005247 41 TTGTTGCTGAGAGAGTGGAACATAGGTCCTAGACAGGGTGA TTGTTGCTGAGAGAGTGGAACATAGGTCCTAGGCAGGGTGA < 41bp 1 0.491118414067658 1 0.171545952558517 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DKC1 ENSG00000130826 UTR3 Human protein_coding chrX:154005227 chrX:154005239 . . 0 33 hm5C_associated_SNPs_15078 0 0 1 3 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16760 DeepMRMD:1;iRNA_m5C:0.999536712157815 16761 chrX 154005239 154005239 1 + A G rs7878787 154005235 + 154005215 154005255 41 GAGAGAGTGGAACATAGGTCCTAGACAGGGTGAAGAGTTCT GAGAGAGTGGAACATAGGTCCTAGGCAGGGTGAAGAGTTCT < 41bp 1 0.681016176767292 1 0.164220988750458 experiment 0.637967646465417 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DKC1 ENSG00000130826 UTR3 Human protein_coding chrX:154005235 chrX:154005239 . . 0 25 hm5C_associated_SNPs_15079 0 0 1 3 0 Cytosol 1 0.500231643915799 1 0.999536712168402 hm5C_site_16761 DeepMRMD:1;iRNA_m5C:0.999536712168402 16762 chr16 2506732 2506732 1 + G A ACC 2506715 + 2506695 2506735 41 GCAACCCCTGGACCCAAACCCCTGGTCCGCACCAGCCGGGA GCAACCCCTGGACCCAAACCCCTGGTCCGCACCAGCCAGGA < 41bp 1 0.246226644996535 1 0.779003500938416 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control CCNF ENSG00000162063 CDS Human protein_coding chr16:2506715 chr16:2506732 nonsynonymous SNV 0.000 0 38 hm5C_associated_SNPs_15080 0 0 0 0 0 Cytosol 1 0.500231643918711 0.441992998123168 0.999536712162579 hm5C_site_16762 DeepMRMD:0.441992998123168;iRNA_m5C:0.999536712162579 16763 chr15 74335395 74335395 1 + C T ACC 74335388 + 74335368 74335408 41 TGACCTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGG TGACCTCCAGCTGGAAGGCCCCAGCACTCTCAGGGTCCTGG < 41bp 1 0.151705878865535 1 0.120758384466171 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74335388 chr15:74335395 synonymous SNV . 0 28 hm5C_associated_SNPs_15081 0 0 0 1 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_16763 DeepMRMD:1;iRNA_m5C:0.999536712157816 16764 chr13 26923272 26923272 1 + G T ACC 26923264 + 26923244 26923284 41 TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGT TCTTCAAAAGGTGTTTCTGTCTCATGCTTATAGGAAGGTGT < 41bp 1 0.448725984912422 1 0.300919532775879 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26923264 chr13:26923272 nonsynonymous SNV 0.998 3 29 hm5C_associated_SNPs_15082 0 0 1 0 2 Cytosol 1 0.500231144113691 1 0.999537711772617 hm5C_site_16764 DeepMRMD:1;iRNA_m5C:0.999537711772617 16765 chr9 101765834 101765834 1 + A G ACC 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCGGGGGACCAACCCTCTCTGTGTCCACGGAGAACCCAG < 41bp 1 0.460029646728487 1 0.101806402206421 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765834 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_15084 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643918642 1 0.999536712162715 hm5C_site_16765 DeepMRMD:1;iRNA_m5C:0.999536712162715 16766 chr7 128846172 128846172 1 + C G ACC 128846171 + 128846151 128846191 41 CACCTGCTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC CACCTGCTCACCTGGTCACTCGCCTTTGTCCTCACTGTGGC < 41bp 1 0.540261417693071 1 0.183450013399124 experiment 0.919477164613859 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128846171 chr7:128846172 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_15085 0 0 0 0 1 cytosol 1 0.500231665174388 1 0.999536669651224 hm5C_site_16766 DeepMRMD:1;iRNA_m5C:0.999536669651224 16767 chr19 45801154 45801154 1 + G T ACC 45801142 + 45801122 45801162 41 CACTGGCCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCC CACTGGCCCATGAGGCTGCACCCCTGCCCGCCTGGCGGCCC < 41bp 1 0.233984815956625 1 0.0154831409454346 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801142 chr19:45801154 nonsynonymous SNV 0.633 2 33 hm5C_associated_SNPs_15086 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16767 DeepMRMD:1;iRNA_m5C:0.999536712157815 16768 chr19 45801154 45801154 1 + G T ACC 45801143 + 45801123 45801163 41 ACTGGCCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCC ACTGGCCCATGAGGCTGCACCCCTGCCCGCCTGGCGGCCCC < 41bp 1 0.239641660365016 1 0.132094115018845 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801143 chr19:45801154 nonsynonymous SNV 0.633 2 32 hm5C_associated_SNPs_15087 0 0 1 0 1 Nucleus 1 0.500231643920813 1 0.999536712158374 hm5C_site_16768 DeepMRMD:1;iRNA_m5C:0.999536712158374 16769 chr19 45801154 45801154 1 + G T ACC 45801144 + 45801124 45801164 41 CTGGCCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCG CTGGCCCATGAGGCTGCACCCCTGCCCGCCTGGCGGCCCCG < 41bp 1 0.141421775837247 1 0.0627864897251129 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801144 chr19:45801154 nonsynonymous SNV 0.633 2 31 hm5C_associated_SNPs_15088 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16769 DeepMRMD:1;iRNA_m5C:0.999536712157815 16770 chr19 45801154 45801154 1 + G T ACC 45801145 + 45801125 45801165 41 TGGCCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGC TGGCCCATGAGGCTGCACCCCTGCCCGCCTGGCGGCCCCGC < 41bp 1 0.432266578907592 1 0.139462620019913 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801145 chr19:45801154 nonsynonymous SNV 0.633 2 30 hm5C_associated_SNPs_15089 0 0 1 0 1 Nucleus 1 0.500231643532095 1 0.999536712935811 hm5C_site_16770 DeepMRMD:1;iRNA_m5C:0.999536712935811 16771 chr19 45801154 45801154 1 + G T ACC 45801148 + 45801128 45801168 41 CCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCC CCCATGAGGCTGCACCCCTGCCCGCCTGGCGGCCCCGCCCC < 41bp 1 0.4484534014679 1 0.220012128353119 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801148 chr19:45801154 nonsynonymous SNV 0.633 2 27 hm5C_associated_SNPs_15090 0 0 1 0 1 Nucleus 1 0.500231643921005 1 0.999536712157991 hm5C_site_16771 DeepMRMD:1;iRNA_m5C:0.999536712157991 16772 chr19 45801154 45801154 1 + G T ACC 45801149 + 45801129 45801169 41 CCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCA CCATGAGGCTGCACCCCTGCCCGCCTGGCGGCCCCGCCCCA < 41bp 1 0.332053697487611 1 0.110713571310043 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801149 chr19:45801154 nonsynonymous SNV 0.633 2 26 hm5C_associated_SNPs_15091 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16772 DeepMRMD:1;iRNA_m5C:0.999536712157815 16773 chr19 45801154 45801154 1 + G T ACC 45801150 + 45801130 45801170 41 CATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCAC CATGAGGCTGCACCCCTGCCCGCCTGGCGGCCCCGCCCCAC < 41bp 1 0.694170188737574 1 0.138041585683823 experiment 0.611659622524852 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801150 chr19:45801154 nonsynonymous SNV 0.633 2 25 hm5C_associated_SNPs_15092 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16773 DeepMRMD:1;iRNA_m5C:0.999536712157815 16774 chr19 45801154 45801154 1 + G T ACC 45801152 + 45801132 45801172 41 TGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCACCA TGAGGCTGCACCCCTGCCCGCCTGGCGGCCCCGCCCCACCA < 41bp 1 0.258848202612495 1 0.220105826854706 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801152 chr19:45801154 nonsynonymous SNV 0.633 2 23 hm5C_associated_SNPs_15093 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16774 DeepMRMD:1;iRNA_m5C:0.999536712157815 16775 chr19 45801154 45801154 1 + G T ACC 45801153 + 45801133 45801173 41 GAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCACCAC GAGGCTGCACCCCTGCCCGCCTGGCGGCCCCGCCCCACCAC < 41bp 1 0.635263197452245 1 0.761174440383911 experiment 0.72947360509551 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801153 chr19:45801154 nonsynonymous SNV 0.633 2 22 hm5C_associated_SNPs_15094 0 0 1 0 1 Nucleus 1 0.500231643896926 0.477651119232178 0.999536712206147 hm5C_site_16775 DeepMRMD:0.477651119232178;iRNA_m5C:0.999536712206147 16776 chr22 45822021 45822021 1 + G T ACC 45822019 + 45821999 45822039 41 CAGGAGCAGCTGGAGCAGATCCGCCTAGTCCAGAAGCAGCA CAGGAGCAGCTGGAGCAGATCCTCCTAGTCCAGAAGCAGCA < 41bp 1 0.115665593072081 1 0.292618453502655 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45822019 chr22:45822021 nonsynonymous SNV 0.535 0 23 hm5C_associated_SNPs_15095 0 0 0 0 1 exosome 1 0.500231653689407 1 0.999536692621185 hm5C_site_16776 DeepMRMD:1;iRNA_m5C:0.999536692621185 16777 chr1 110766353 110766353 1 + C A ACC 110766341 + 110766321 110766361 41 GTCAACAACTTCGGCATGTACTACTCCCTGGCCATGGCCAA GTCAACAACTTCGGCATGTACTACTCCCTGGCAATGGCCAA < 41bp 1 0.28595500009805 1 0.0613909959793091 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110766341 chr1:110766353 synonymous SNV . 0 33 hm5C_associated_SNPs_15097 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16777 DeepMRMD:1;iRNA_m5C:0.999536712157815 16778 chr10 118306857 118306857 1 + G T ACC 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGACTCCCCATTGTCAGGAATTAC < 41bp 1 0.282054889157742 1 0.0227570831775665 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306857 nonsynonymous SNV 0.866 5 29 hm5C_associated_SNPs_15098 0 0 0 0 1 unknown 1 0.500231695679082 1 0.999536608641837 hm5C_site_16778 DeepMRMD:1;iRNA_m5C:0.999536608641837 16779 chr10 118306857 118306857 1 + G T ACC 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCATTGTCAGGAATTACGGAA < 41bp 1 0.14132395775921 1 0.101627439260483 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306857 nonsynonymous SNV 0.866 5 25 hm5C_associated_SNPs_15100 0 0 0 0 1 unknown 1 0.500231643921077 1 0.999536712157847 hm5C_site_16779 DeepMRMD:1;iRNA_m5C:0.999536712157847 16780 chr10 118306857 118306857 1 + G T ACC 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCATTGTCAGGAATTACGGAAA < 41bp 1 0.198260105923783 1 0.361791372299194 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306857 nonsynonymous SNV 0.866 5 24 hm5C_associated_SNPs_15101 0 0 0 0 1 unknown 1 0.500231643612166 1 0.999536712775669 hm5C_site_16780 DeepMRMD:1;iRNA_m5C:0.999536712775669 16781 chr3 185337191 185337191 1 + G T ACC 185337187 + 185337167 185337207 41 CTTCTATCCTAAATTAAAGTCTGGGGGTTACCAAGCAGTGA CTTCTATCCTAAATTAAAGTCTGGTGGTTACCAAGCAGTGA < 41bp 1 0.624400149492812 1 0.220503300428391 experiment 0.751199701014377 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SENP2 ENSG00000163904 CDS Human protein_coding chr3:185337187 chr3:185337191 synonymous SNV . 0 25 hm5C_associated_SNPs_15102 0 0 0 0 1 Ribosome 1 0.500231648664916 1 0.999536702670168 hm5C_site_16781 DeepMRMD:1;iRNA_m5C:0.999536702670168 16782 chr5 179195985 179195985 1 + G T ACC 179195992 + 179195972 179196012 41 CCGCTGTAATGAAGCAGCATCAGTTGCTTTTGGACCAACAG CCGCTGTAATGAATCAGCATCAGTTGCTTTTGGACCAACAG < 41bp 1 0.0697546943543162 1 0.456250965595245 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAML1 ENSG00000161021 CDS Human protein_coding chr5:179195992 chr5:179195985 nonsynonymous SNV 0.931 3 14 hm5C_associated_SNPs_15103 0 0 1 0 0 Ribosome 1 0.500344071456951 1 0.999311857086099 hm5C_site_16782 DeepMRMD:1;iRNA_m5C:0.999311857086099 16783 chr9 2077741 2077741 1 + G T ACC 2077760 + 2077740 2077780 41 TGCCCTCCTAATTAATGGGACCCTAAAGCATTACCAGGTAA TTCCCTCCTAATTAATGGGACCCTAAAGCATTACCAGGTAA < 41bp 1 0.0909975307093453 1 0.0259595811367035 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2077760 chr9:2077741 nonsynonymous SNV 0.997 1 2 hm5C_associated_SNPs_15104 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16783 DeepMRMD:1;iRNA_m5C:0.999536712157815 16784 chr7 101821789 101821789 1 + T C ACC 101821775 + 101821755 101821795 41 GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGCTGAGTT < 41bp 1 0.511861745616643 1 0.881910860538483 experiment 0.976276508766713 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101821775 chr7:101821789 nonsynonymous SNV 0.999 0 35 hm5C_associated_SNPs_15105 0 0 1 0 2 Exosome 1 0.500231643938333 0.236178278923034 0.999536712123333 hm5C_site_16784 DeepMRMD:0.236178278923034;iRNA_m5C:0.999536712123333 16785 chr5 68485476 68485476 1 + C G ACC 68485471 + 68485451 68485491 41 CTCAACCAGCAATGGAGGAGCAGCCCCAGATGCAAGACGCC CTCAACCAGCAATGGAGGAGCAGCCGCAGATGCAAGACGCC < 41bp 1 0.51686309986926 1 0.705702245235443 experiment 0.966273800261481 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CENPH ENSG00000153044 CDS Human protein_coding chr5:68485471 chr5:68485476 synonymous SNV . 0 26 hm5C_associated_SNPs_15106 0 0 1 0 0 Ribosome 1 0.500231643920942 0.588595509529114 0.999536712158116 hm5C_site_16785 DeepMRMD:0.588595509529114;iRNA_m5C:0.999536712158116 16786 chr7 73636002 73636002 1 + G A ACC 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGCAGTTCTCGAAGCCCCCAGAA < 41bp 1 0.165059183040314 1 0.212604284286499 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636002 nonsynonymous SNV 0.023 0 22 hm5C_associated_SNPs_15107 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16786 DeepMRMD:1;iRNA_m5C:0.999536712157815 16787 chr7 73636002 73636002 1 + G A ACC 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG < 41bp 1 0.116622796201118 1 0.128506511449814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636002 nonsynonymous SNV 0.023 0 10 hm5C_associated_SNPs_15108 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16787 DeepMRMD:1;iRNA_m5C:0.999536712157815 16788 chr7 73636002 73636002 1 + G A ACC 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG < 41bp 1 0.387584569165803 1 0.265425741672516 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636002 nonsynonymous SNV 0.023 0 9 hm5C_associated_SNPs_15109 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_16788 DeepMRMD:1;iRNA_m5C:0.999536712157815 16789 chr7 73636002 73636002 1 + G A ACC 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA < 41bp 1 0.211519896216554 1 0.196709543466568 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636002 nonsynonymous SNV 0.023 0 8 hm5C_associated_SNPs_15110 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16789 DeepMRMD:1;iRNA_m5C:0.999536712157815 16790 chr7 73636002 73636002 1 + G A ACC 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC < 41bp 1 0.519735450539891 1 0.44497475028038 experiment 0.960529098920218 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636002 nonsynonymous SNV 0.023 0 7 hm5C_associated_SNPs_15111 0 0 1 0 2 chromatin 1 0.500231643921129 1 0.999536712157742 hm5C_site_16790 DeepMRMD:1;iRNA_m5C:0.999536712157742 16791 chr7 73636002 73636002 1 + G A ACC 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGCAGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA < 41bp 1 0.653594655349166 1 0.888792872428894 experiment 0.692810689301668 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636002 nonsynonymous SNV 0.023 0 6 hm5C_associated_SNPs_15112 0 0 1 0 2 chromatin 1 0.500231643921092 0.222414255142212 0.999536712157815 hm5C_site_16791 DeepMRMD:0.222414255142212;iRNA_m5C:0.999536712157815 16792 chr2 234354288 234354288 1 + C T ACC 234354284 + 234354264 234354304 41 CTTAGTGTCAGCTGGGAGTGCTGCCGCTCGGCACAGGGAAC CTTAGTGTCAGCTGGGAGTGCTGCTGCTCGGCACAGGGAAC < 41bp 1 0.358040722323905 1 0.379675328731537 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKD ENSG00000077044 CDS Human protein_coding chr2:234354284 chr2:234354288 nonsynonymous SNV 0.394 4 25 hm5C_associated_SNPs_15114 0 0 1 0 0 Nucleus 1 0.500231645702663 1 0.999536708594675 hm5C_site_16792 DeepMRMD:1;iRNA_m5C:0.999536708594675 16793 chr6 29910607 29910607 1 + G C ACC 29910604 + 29910584 29910624 41 GGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACAC GGGGAGCCCCGCTTCATCGCCGTCGGCTACGTGGACGACAC < 41bp 1 0.505995245797462 1 0.391000688076019 experiment 0.988009508405076 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29910604 chr6:29910607 synonymous SNV . 0 24 hm5C_associated_SNPs_15115 0 0 1 0 0 Endoplasmic reticulum 1 0.500226802446799 1 0.999546395106403 hm5C_site_16793 DeepMRMD:1;iRNA_m5C:0.999546395106403 16794 chr14 75359678 75359678 1 + C A ACC 75359687 + 75359667 75359707 41 ACAGCCTCCTTCTGGCAAACCTGGTAGGCTTCCAACTCCCA ACAGCCTCCTTATGGCAAACCTGGTAGGCTTCCAACTCCCA < 41bp 1 0.675063434511743 1 0.0473174154758453 experiment 0.649873130976513 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359687 chr14:75359678 nonsynonymous SNV 0.242 1 12 hm5C_associated_SNPs_15116 0 0 1 0 1 Ribosome 1 0.500231644007396 1 0.999536711985209 hm5C_site_16794 DeepMRMD:1;iRNA_m5C:0.999536711985209 16795 chr19 42410903 42410903 1 + G T ACC 42410885 + 42410865 42410905 41 AGGAATTTTGCCGCCTGAGACCCCTCCTGTCTCAGCTTGGG AGGAATTTTGCCGCCTGAGACCCCTCCTGTCTCAGCTTTGG < 41bp 1 0.153892038411056 1 0.0369838774204254 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42410885 chr19:42410903 nonsynonymous SNV 0.964 2 39 hm5C_associated_SNPs_15117 0 0 1 0 2 Cytosol 1 0.500231643921141 1 0.999536712157718 hm5C_site_16795 DeepMRMD:1;iRNA_m5C:0.999536712157718 16796 chr1 36026523 36026523 1 + C A ACC 36026504 + 36026484 36026524 41 GCCCCTCTTTTTGCCCCCGACAACCGTGCCCCCTGAATGCT GCCCCTCTTTTTGCCCCCGACAACCGTGCCCCCTGAATGAT < 41bp 1 0.225538551243145 1 0.0798792243003845 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36026504 chr1:36026523 stopgain 0.985 1 40 hm5C_associated_SNPs_15118 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16796 DeepMRMD:1;iRNA_m5C:0.999536712157815 16797 chr1 36026523 36026523 1 + C A ACC 36026508 + 36026488 36026528 41 CTCTTTTTGCCCCCGACAACCGTGCCCCCTGAATGCTACCG CTCTTTTTGCCCCCGACAACCGTGCCCCCTGAATGATACCG < 41bp 1 0.169340196349187 1 0.42683082818985 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36026508 chr1:36026523 stopgain 0.985 1 36 hm5C_associated_SNPs_15119 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16797 DeepMRMD:1;iRNA_m5C:0.999536712157815 16798 chr11 14865507 14865507 1 + G T ACC 14865490 + 14865470 14865510 41 TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTTCCA < 41bp 1 0.412207910845796 1 0.86513876914978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14865490 chr11:14865507 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_15120 0 0 1 0 1 chromatin 1 0.500231574487836 0.26972246170044 0.999536851024327 hm5C_site_16798 DeepMRMD:0.26972246170044;iRNA_m5C:0.999536851024327 16799 chr5 142264925 142264925 1 + G T ACC 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTTAATTT < 41bp 1 0.0965325057163548 1 0.382794857025146 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264925 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_15121 0 0 1 0 2 Nucleus 1 0.500231643781609 1 0.999536712436783 hm5C_site_16799 DeepMRMD:1;iRNA_m5C:0.999536712436783 16800 chr6 42957364 42957364 1 + G T ACC 42957366 + 42957346 42957386 41 CAGGAGCCCCCCAAGGTTGCCAAATGCACAGCCAAGCCTAG CAGGAGCCCCCCAAGGTTTCCAAATGCACAGCCAAGCCTAG < 41bp 1 0.25475966155567 1 0.785374283790588 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42957366 chr6:42957364 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_15123 0 0 1 0 2 Ribosome 1 0.500231643921092 0.429251432418824 0.999536712157815 hm5C_site_16800 DeepMRMD:0.429251432418824;iRNA_m5C:0.999536712157815 16801 chr4 183696223 183696223 1 + G T ACC 183696207 + 183696187 183696227 41 CCGACGGTTGCCAAAAGAAACATGACTTTGCCTGGCGAGAA CCGACGGTTGCCAAAAGAAACATGACTTTGCCTGGCTAGAA < 41bp 1 0.343308844197145 1 0.132273942232132 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183696207 chr4:183696223 stopgain 0.941 0 37 hm5C_associated_SNPs_15124 0 0 1 0 0 nucleus 1 0.500231643924807 1 0.999536712150387 hm5C_site_16801 DeepMRMD:1;iRNA_m5C:0.999536712150387 16802 chr6 151647016 151647016 1 + C A ACC 151647007 + 151646987 151647027 41 ACTTAAAATATGCTGGGGACCATCACCATCACAGGTAAGGC ACTTAAAATATGCTGGGGACCATCACCATAACAGGTAAGGC < 41bp 1 0.155934729927981 1 0.145742744207382 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151647007 chr6:151647016 synonymous SNV . 0 30 hm5C_associated_SNPs_15125 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16802 DeepMRMD:1;iRNA_m5C:0.999536712157815 16803 chr16 31121421 31121421 1 + C A ACC 31121439 + 31121419 31121459 41 TTCCAGAAGCTGACAGACTTCCCTCCGGTGAGTGCTGGGCC TTACAGAAGCTGACAGACTTCCCTCCGGTGAGTGCTGGGCC < 41bp 1 0.0953749123812944 1 0.106821596622467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121439 chr16:31121421 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_15126 0 0 1 2 2 Ribosome 1 0.50023164336661 1 0.999536713266781 hm5C_site_16803 DeepMRMD:1;iRNA_m5C:0.999536713266781 16804 chr8 22064484 22064484 1 + G T ACC 22064464 + 22064444 22064484 41 AAGGAGTGCACGTGGGCCATCTCCAGCACCCCCGGGCACCG AAGGAGTGCACGTGGGCCATCTCCAGCACCCCCGGGCACCT < 41bp 1 0.687012065110091 1 0.872571110725403 experiment 0.625975869779819 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064464 chr8:22064484 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_15127 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643918254 0.254857778549194 0.999536712163491 hm5C_site_16804 DeepMRMD:0.254857778549194;iRNA_m5C:0.999536712163491 16805 chr2 223782837 223782837 1 + C T ACC 223782831 + 223782811 223782851 41 TTAAATGAAACAGAGGTGACCAACATCATTACTAGTAAAGA TTAAATGAAACAGAGGTGACCAACATTATTACTAGTAAAGA < 41bp 1 0.551355296312331 1 0.213681608438492 experiment 0.897289407375338 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223782831 chr2:223782837 synonymous SNV . 0 27 hm5C_associated_SNPs_15128 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643914315 1 0.99953671217137 hm5C_site_16805 DeepMRMD:1;iRNA_m5C:0.99953671217137 16806 chr19 11472132 11472132 1 + G T ACC 11472113 + 11472093 11472133 41 GTGGCCGCCGCGCGCCGCGCCTTCCCCTGCAAGGATGCGGC GTGGCCGCCGCGCGCCGCGCCTTCCCCTGCAAGGATGCGTC < 41bp 1 0.136406245125807 1 0.342728018760681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11472113 chr19:11472132 nonsynonymous SNV 0.989 1 40 hm5C_associated_SNPs_15129 0 0 1 0 1 exosome 1 0.500231765261255 1 0.99953646947749 hm5C_site_16806 DeepMRMD:1;iRNA_m5C:0.99953646947749 16807 chr17 79080645 79080645 1 + G A ACC 79080643 + 79080623 79080663 41 CGCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCT CGCCGCCTCCCGGGCCTTCCCCACCCAGACGGCCAGCGGCT < 41bp 1 0.298467449402257 1 0.0911566019058228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080643 chr17:79080645 nonsynonymous SNV 0.383 0 23 hm5C_associated_SNPs_15130 0 0 1 0 1 Cytosol 1 0.500231643921048 1 0.999536712157904 hm5C_site_16807 DeepMRMD:1;iRNA_m5C:0.999536712157904 16808 chr17 79080645 79080645 1 + G A ACC 79080644 + 79080624 79080664 41 GCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCTT GCCGCCTCCCGGGCCTTCCCCACCCAGACGGCCAGCGGCTT < 41bp 1 0.5202581171652 1 0.0676816999912262 experiment 0.9594837656696 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080644 chr17:79080645 nonsynonymous SNV 0.383 0 22 hm5C_associated_SNPs_15131 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_16808 DeepMRMD:1;iRNA_m5C:0.999536712157815 16809 chr5 71495181 71495181 1 + C A ACC 71495192 + 71495172 71495212 41 GTGGCCACACACTTGGGGACCCCAGCTACTCTTATGAAACC GTGGCCACAAACTTGGGGACCCCAGCTACTCTTATGAAACC < 41bp 1 0.0856994649026919 1 0.12407848238945 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71495192 chr5:71495181 nonsynonymous SNV 0.996 1 10 hm5C_associated_SNPs_15132 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16809 DeepMRMD:1;iRNA_m5C:0.999536712157815 16810 chr6 27101075 27101075 1 + G C ACC 27101062 + 27101042 27101082 41 GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC GGAACTGGCGGGCAACGCGGCCCGCGACAACAACAAGACCC < 41bp 1 0.357431722166705 1 0.283383160829544 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101062 chr6:27101075 nonsynonymous SNV 0.999 2 34 hm5C_associated_SNPs_15133 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16810 DeepMRMD:1;iRNA_m5C:0.999536712157815 16811 chr6 27101075 27101075 1 + G C ACC 27101063 + 27101043 27101083 41 GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG GAACTGGCGGGCAACGCGGCCCGCGACAACAACAAGACCCG < 41bp 1 0.419576527127172 1 0.200440645217896 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101063 chr6:27101075 nonsynonymous SNV 0.999 2 33 hm5C_associated_SNPs_15134 0 0 1 0 0 Ribosome 1 0.500231632748554 1 0.999536734502892 hm5C_site_16811 DeepMRMD:1;iRNA_m5C:0.999536734502892 16812 chr3 58128391 58128391 1 + C G ACC 58128382 + 58128362 58128402 41 GCCTTCTGTTTTTAGGTGACCGAAGAGGCCTATGTCCCAGT GCCTTCTGTTTTTAGGTGACCGAAGAGGCGTATGTCCCAGT < 41bp 1 0.156497554309558 1 0.843326210975647 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58128382 chr3:58128391 synonymous SNV . 0 30 hm5C_associated_SNPs_15136 0 0 1 0 2 Cytosol 1 0.500234240828576 0.313347578048706 0.999531518342847 hm5C_site_16812 DeepMRMD:0.313347578048706;iRNA_m5C:0.999531518342847 16813 chr2 70096886 70096886 1 + C T ACC 70096880 + 70096860 70096900 41 CGTTGGACAGGTTTTAACTTCGGCTTCGACCTACTTGTAAC CGTTGGACAGGTTTTAACTTCGGCTTTGACCTACTTGTAAC < 41bp 1 0.641206149005761 1 0.290747761726379 experiment 0.717587701988478 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096880 chr2:70096886 synonymous SNV . 0 27 hm5C_associated_SNPs_15137 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_16813 DeepMRMD:1;iRNA_m5C:0.999536712157815 16814 chr19 45260388 45260388 1 + G A ACC 45260397 + 45260377 45260417 41 CCGCTCACCTGGCGTGCGAGCACCGCAGCCCGACCTGCCTG CCGCTCACCTGACGTGCGAGCACCGCAGCCCGACCTGCCTG < 41bp 1 0.625591976132086 1 0.361227929592133 experiment 0.748816047735828 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45260397 chr19:45260388 nonsynonymous SNV 0.984 5 12 hm5C_associated_SNPs_15140 0 0 0 0 1 chromatin 1 0.500231650405637 1 0.999536699188726 hm5C_site_16814 DeepMRMD:1;iRNA_m5C:0.999536699188726 16815 chr6 80406276 80406276 1 + A G ACC 80406278 + 80406258 80406298 41 CCTGAAACCACGGTTGGCATCAAAGGTAGGTAAATCTTTTC CCTGAAACCACGGTTGGCGTCAAAGGTAGGTAAATCTTTTC < 41bp 1 0.539749371826415 1 0.733031272888184 experiment 0.92050125634717 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SH3BGRL2 ENSG00000198478 CDS Human protein_coding chr6:80406278 chr6:80406276 synonymous SNV . 0 19 hm5C_associated_SNPs_15141 0 0 1 0 2 Ribosome 1 0.500231636547541 0.533937454223632 0.999536726904918 hm5C_site_16815 DeepMRMD:0.533937454223632;iRNA_m5C:0.999536726904918 16816 chr3 47036641 47036641 1 + G A ACC 47036632 + 47036612 47036652 41 CCCACCGCTGAGCTGCGGCTCTTCCTAGCGCAACGCCTCAG CCCACCGCTGAGCTGCGGCTCTTCCTAGCACAACGCCTCAG < 41bp 1 0.0860567165603508 1 0.124018490314484 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47036632 chr3:47036641 synonymous SNV . 0 30 hm5C_associated_SNPs_15142 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16816 DeepMRMD:1;iRNA_m5C:0.999536712157815 16817 chr11 118495742 118495742 1 + C T ACC 118495741 + 118495721 118495761 41 AGCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTA AGCATGATTCCAGCAGGGGGCTGAGCCCCTGGGCCCCCCTA < 41bp 1 0.487272550153561 1 0.394261062145233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495741 chr11:118495742 stopgain 0.995 0 22 hm5C_associated_SNPs_15143 0 0 0 0 2 Cytosol 1 0.500231643921015 1 0.999536712157971 hm5C_site_16817 DeepMRMD:1;iRNA_m5C:0.999536712157971 16818 chr11 118495742 118495742 1 + C T ACC 118495754 + 118495734 118495774 41 CAGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCT CAGGGGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCT < 41bp 1 0.090736715747838 1 0.0360175967216492 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495754 chr11:118495742 stopgain 0.995 0 9 hm5C_associated_SNPs_15144 0 0 0 0 2 Cytosol 1 0.500231643902937 1 0.999536712194125 hm5C_site_16818 DeepMRMD:1;iRNA_m5C:0.999536712194125 16819 chr11 118495742 118495742 1 + C T ACC 118495755 + 118495735 118495775 41 AGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTG AGGGGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTG < 41bp 1 0.135989790272771 1 0.0320621728897095 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495755 chr11:118495742 stopgain 0.995 0 8 hm5C_associated_SNPs_15145 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16819 DeepMRMD:1;iRNA_m5C:0.999536712157815 16820 chr11 118495742 118495742 1 + C T ACC 118495756 + 118495736 118495776 41 GGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGG GGGGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGG < 41bp 1 0.184619353999402 1 0.0546457171440125 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495756 chr11:118495742 stopgain 0.995 0 7 hm5C_associated_SNPs_15146 0 0 0 0 2 Cytosol 1 0.500231643921121 1 0.999536712157759 hm5C_site_16820 DeepMRMD:1;iRNA_m5C:0.999536712157759 16821 chr11 118495742 118495742 1 + C T ACC 118495757 + 118495737 118495777 41 GGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGT GGGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGT < 41bp 1 0.248830682691981 1 0.0627687871456146 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495757 chr11:118495742 stopgain 0.995 0 6 hm5C_associated_SNPs_15147 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16821 DeepMRMD:1;iRNA_m5C:0.999536712157815 16822 chr11 118495742 118495742 1 + C T ACC 118495758 + 118495738 118495778 41 GGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGTA GGGCTGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGTA < 41bp 1 0.0565258444052234 1 0.323922127485275 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495758 chr11:118495742 stopgain 0.995 0 5 hm5C_associated_SNPs_15148 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16822 DeepMRMD:1;iRNA_m5C:0.999536712157815 16823 chr21 46900432 46900432 1 + C T ACC 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGTGGGT < 41bp 1 0.0322796783188585 1 0.169211447238922 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900432 nonsynonymous SNV 0.161 3 37 hm5C_associated_SNPs_15149 0 0 1 0 2 Nucleus 1 0.500231643901881 1 0.999536712196239 hm5C_site_16823 DeepMRMD:1;iRNA_m5C:0.999536712196239 16824 chr9 71861604 71861604 1 + A G ACC 71861613 + 71861593 71861633 41 TATATTTCTATAGCTACAATCAACCTAAATTCAGCCAATGA TATATTTCTATGGCTACAATCAACCTAAATTCAGCCAATGA < 41bp 1 0.0929977698574326 1 0.697188675403595 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TJP2 ENSG00000119139 splicing Human protein_coding chr9:71861613 chr9:71861604 . 0.866 0 12 hm5C_associated_SNPs_15150 0 0 1 0 0 Nucleus 1 0.500231612808668 0.60562264919281 0.999536774382663 hm5C_site_16824 DeepMRMD:0.60562264919281;iRNA_m5C:0.999536774382663 16825 chr5 149758877 149758877 1 + C G ACC 149758892 + 149758872 149758912 41 CGTGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGG CGTGGGTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGG < 41bp 1 0.0956980733823551 1 0.116784632205963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758892 chr5:149758877 nonsynonymous SNV 0.009 2 6 hm5C_associated_SNPs_15152 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16825 DeepMRMD:1;iRNA_m5C:0.999536712157815 16826 chr5 149758877 149758877 1 + C G ACC 149758893 + 149758873 149758913 41 GTGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGA GTGGGTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGA < 41bp 1 0.242685768113834 1 0.262529462575912 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758893 chr5:149758877 nonsynonymous SNV 0.009 2 5 hm5C_associated_SNPs_15153 0 0 1 0 2 Nucleus 1 0.5002316439211 1 0.9995367121578 hm5C_site_16826 DeepMRMD:1;iRNA_m5C:0.9995367121578 16827 chr5 149758877 149758877 1 + C G ACC 149758894 + 149758874 149758914 41 TGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGAC TGGGTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGAC < 41bp 1 0.133270351299319 1 0.188710004091263 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758894 chr5:149758877 nonsynonymous SNV 0.009 2 4 hm5C_associated_SNPs_15154 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16827 DeepMRMD:1;iRNA_m5C:0.999536712157815 16828 chr17 16285604 16285604 1 + A G ACC 16285613 + 16285593 16285633 41 GCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCC GCAGCTGGAAGGTGGCCGCACTCTTTCTGACTACAACATCC < 41bp 1 0.39581405999906 1 0.111688047647476 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UBB ENSG00000170315 CDS Human protein_coding chr17:16285613 chr17:16285604 nonsynonymous SNV 1.000 0 12 hm5C_associated_SNPs_15155 0 0 1 0 0 Ribosome 1 0.500231643921049 1 0.999536712157902 hm5C_site_16828 DeepMRMD:1;iRNA_m5C:0.999536712157902 16829 chr13 113719264 113719264 1 + C T ACC 113719251 + 113719231 113719271 41 TGTTTTCTCTGTCCCCAAGGCCATCGAAAGTTTCGCCCTCA TGTTTTCTCTGTCCCCAAGGCCATCGAAAGTTTTGCCCTCA < 41bp 1 0.018822011975924 1 0.184009969234467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113719251 chr13:113719264 synonymous SNV . 0 34 hm5C_associated_SNPs_15156 0 0 0 0 1 Cytosol 1 0.500231643921103 1 0.999536712157794 hm5C_site_16829 DeepMRMD:1;iRNA_m5C:0.999536712157794 16830 chr19 41758838 41758838 1 + T C ACC 41758850 + 41758830 41758870 41 ACACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAG ACACAGCTCCCTCCTCTATTCCCGGCTCGGGGACCAGCCAG < 41bp 1 0.60935109854068 1 0.23870462179184 experiment 0.781297802918639 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758850 chr19:41758838 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_15157 0 0 1 0 2 Nucleus 1 0.500231643921078 1 0.999536712157844 hm5C_site_16830 DeepMRMD:1;iRNA_m5C:0.999536712157844 16831 chr19 41758838 41758838 1 + T C ACC 41758851 + 41758831 41758871 41 CACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT CACAGCTCCCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT < 41bp 1 0.164861476037545 1 0.135707557201385 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758851 chr19:41758838 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_15158 0 0 1 0 2 Nucleus 1 0.500231643920963 1 0.999536712158075 hm5C_site_16831 DeepMRMD:1;iRNA_m5C:0.999536712158075 16832 chr12 57560791 57560791 1 + A G ACC 57560805 + 57560785 57560825 41 TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTCG TGGATGGCGACTGTGGGGACCGCTCTGATGAGTCTGCTTCG < 41bp 1 0.0529728109430925 1 0.214202344417572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57560805 chr12:57560791 nonsynonymous SNV 0.969 4 7 hm5C_associated_SNPs_15159 0 0 1 0 2 Exosome 1 0.500231580822738 1 0.999536838354523 hm5C_site_16832 DeepMRMD:1;iRNA_m5C:0.999536838354523 16833 chr1 154962713 154962713 1 + T A ACC 154962708 + 154962688 154962728 41 CCCCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC CCCCTTTCCCTGAGCTGGAACAGTTACTACAGGACACTATC < 41bp 1 0.234786025711314 1 0.257856547832489 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962708 chr1:154962713 nonsynonymous SNV 0.990 4 26 hm5C_associated_SNPs_15160 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16833 DeepMRMD:1;iRNA_m5C:0.999536712157815 16834 chr10 103900009 103900009 1 + G A ACC 103900017 + 103899997 103900037 41 GACTCTGCCCAAGCCAGCCCCATGCCAGTTGACTCTGTTGA GACTCTGCCCAAACCAGCCCCATGCCAGTTGACTCTGTTGA < 41bp 1 0.0645868874186774 1 0.285590350627899 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103900017 chr10:103900009 nonsynonymous SNV 0.002 1 13 hm5C_associated_SNPs_15161 0 0 1 0 0 Cytosol 1 0.500232257841339 1 0.999535484317323 hm5C_site_16834 DeepMRMD:1;iRNA_m5C:0.999535484317323 16835 chr1 63282309 63282309 1 + A T ACC 63282293 + 63282273 63282313 41 CGGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA CGGGATGTACAATAGAGGATCACGTAATTGCAGGAATTGTA < 41bp 1 0.441340967800949 1 0.141036182641983 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4C ENSG00000125703 CDS Human protein_coding chr1:63282293 chr1:63282309 nonsynonymous SNV 0.999 1 37 hm5C_associated_SNPs_15162 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16835 DeepMRMD:1;iRNA_m5C:0.999536712157815 16836 chr8 146032798 146032798 1 + A G ACC 146032805 + 146032785 146032825 41 GTTCTGCAGGAAGACCTGGGCCGGCCTGTGGGGAGCTCAGC GTTCTGCAGGAAGGCCTGGGCCGGCCTGTGGGGAGCTCAGC < 41bp 1 0.423975034461659 1 0.471333146095276 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146032805 chr8:146032798 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_15163 0 0 0 0 0 chromatin 1 0.500231644368486 1 0.999536711263027 hm5C_site_16836 DeepMRMD:1;iRNA_m5C:0.999536711263027 16837 chr8 146032798 146032798 1 + A G ACC 146032806 + 146032786 146032826 41 TTCTGCAGGAAGACCTGGGCCGGCCTGTGGGGAGCTCAGCC TTCTGCAGGAAGGCCTGGGCCGGCCTGTGGGGAGCTCAGCC < 41bp 1 0.511567273934825 1 0.408934950828552 experiment 0.976865452130349 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146032806 chr8:146032798 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_15164 0 0 0 0 0 chromatin 1 0.500231643920962 1 0.999536712158076 hm5C_site_16837 DeepMRMD:1;iRNA_m5C:0.999536712158076 16838 chr8 146032798 146032798 1 + A G ACC 146032809 + 146032789 146032829 41 TGCAGGAAGACCTGGGCCGGCCTGTGGGGAGCTCAGCCCCC TGCAGGAAGGCCTGGGCCGGCCTGTGGGGAGCTCAGCCCCC < 41bp 1 0.279119481128089 1 0.517097115516663 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146032809 chr8:146032798 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_15165 0 0 0 0 0 chromatin 1 0.500231643921244 0.965805768966674 0.999536712157512 hm5C_site_16838 DeepMRMD:0.965805768966674;iRNA_m5C:0.999536712157512 16839 chr1 1959038 1959038 1 + G A ACC 1959037 + 1959017 1959057 41 ATCACCTCCACTGTGGCCTGCGACATGGACCTGGCCAAATA ATCACCTCCACTGTGGCCTGCAACATGGACCTGGCCAAATA < 41bp 1 0.497202466542298 1 0.186063885688782 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GABRD ENSG00000187730 CDS Human protein_coding chr1:1959037 chr1:1959038 nonsynonymous SNV 0.984 3 22 hm5C_associated_SNPs_15167 0 0 0 0 2 Cytosol 1 0.500231643899982 1 0.999536712200036 hm5C_site_16839 DeepMRMD:1;iRNA_m5C:0.999536712200036 16840 chr16 1793368 1793368 1 + C A ACC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCACCTGGCTGACGGCACGGTACG < 41bp 1 0.176553905713457 1 0.0508491098880768 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793368 nonsynonymous SNV 0.689 2 20 hm5C_associated_SNPs_15168 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16840 DeepMRMD:1;iRNA_m5C:0.999536712157815 16841 chr1 161173239 161173239 1 + G T ACC 161173246 + 161173226 161173266 41 GAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAG GAGGTGTTCGGCATTGGCAGCCAGATGTGGAATGGGCACAG < 41bp 1 0.649166509553446 1 0.67762553691864 experiment 0.701666980893109 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173246 chr1:161173239 nonsynonymous SNV 0.997 2 14 hm5C_associated_SNPs_15170 0 0 1 0 2 Ribosome 1 0.500231643913805 0.64474892616272 0.99953671217239 hm5C_site_16841 DeepMRMD:0.64474892616272;iRNA_m5C:0.99953671217239 16842 chr14 102476260 102476260 1 + C T ACC 102476275 + 102476255 102476295 41 TGAACCCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC TGAACTCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC < 41bp 1 0.0449494962358117 1 0.345853865146637 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102476275 chr14:102476260 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_15171 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_16842 DeepMRMD:1;iRNA_m5C:0.999536712157815 16843 chr15 42059314 42059314 1 + C T ACC 42059304 + 42059284 42059324 41 GATGCAGATGGTCAGAGTCTCAAGGTGATGCCTTGTTTGGC GATGCAGATGGTCAGAGTCTCAAGGTGATGTCTTGTTTGGC < 41bp 1 0.398559110943431 1 0.692205965518951 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42059304 chr15:42059314 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_15172 0 0 1 0 0 Cytosol 1 0.500226275293467 0.615588068962098 0.999547449413067 hm5C_site_16843 DeepMRMD:0.615588068962098;iRNA_m5C:0.999547449413067 16844 chr16 2564109 2564109 1 + C G ACC 2564089 + 2564069 2564109 41 CGGCCCGCAGAGCTTGCCCCCTCCCCACCCGCAGACATGTC CGGCCCGCAGAGCTTGCCCCCTCCCCACCCGCAGACATGTG < 41bp 1 0.367794190126551 1 0.296096742153168 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP6V0C ENSG00000185883;ENSG00000259784 CDS Human other chr16:2564089 chr16:2564109 nonsynonymous SNV 0.234 0 41 hm5C_associated_SNPs_15173 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921089 1 0.999536712157823 hm5C_site_16844 DeepMRMD:1;iRNA_m5C:0.999536712157823 16845 chr6 30691786 30691786 1 + T A ACC 30691780 + 30691760 30691800 41 CGGCCGATACCTCACCGTGGCTGCTGTCTTCCGTGGTCGGA CGGCCGATACCTCACCGTGGCTGCTGACTTCCGTGGTCGGA < 41bp 1 0.344505437661722 1 0.110723346471786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TUBB ENSG00000196230 CDS Human protein_coding chr6:30691780 chr6:30691786 nonsynonymous SNV 0.998 2 27 hm5C_associated_SNPs_15175 0 0 1 0 0 Cytosol 1 0.500231645277019 1 0.999536709445963 hm5C_site_16845 DeepMRMD:1;iRNA_m5C:0.999536709445963 16846 chr6 30691786 30691786 1 + T A ACC 30691787 + 30691767 30691807 41 TACCTCACCGTGGCTGCTGTCTTCCGTGGTCGGATGTCCAT TACCTCACCGTGGCTGCTGACTTCCGTGGTCGGATGTCCAT < 41bp 1 0.223695064413749 1 0.0214992761611938 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TUBB ENSG00000196230 CDS Human protein_coding chr6:30691787 chr6:30691786 nonsynonymous SNV 0.998 2 20 hm5C_associated_SNPs_15176 0 0 1 0 0 Cytosol 1 0.500231643921098 1 0.999536712157804 hm5C_site_16846 DeepMRMD:1;iRNA_m5C:0.999536712157804 16847 chr6 30691786 30691786 1 + T A ACC 30691797 + 30691777 30691817 41 TGGCTGCTGTCTTCCGTGGTCGGATGTCCATGAAGGAGGTC TGGCTGCTGACTTCCGTGGTCGGATGTCCATGAAGGAGGTC < 41bp 1 0.424764455822485 1 0.548498213291168 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TUBB ENSG00000196230 CDS Human protein_coding chr6:30691797 chr6:30691786 nonsynonymous SNV 0.998 2 10 hm5C_associated_SNPs_15177 0 0 1 0 0 Cytosol 1 0.500231956176031 0.903003573417664 0.999536087647937 hm5C_site_16847 DeepMRMD:0.903003573417664;iRNA_m5C:0.999536087647937 16848 chr12 53663137 53663137 1 + C T ACC 53663151 + 53663131 53663171 41 TGCTCCCCAGGACTATGAGGCCGTGGCTCGGGGCAGCTTTT TGCTCCTCAGGACTATGAGGCCGTGGCTCGGGGCAGCTTTT < 41bp 1 0.14454526824079 1 0.283485591411591 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663151 chr12:53663137 synonymous SNV . 0 7 hm5C_associated_SNPs_15178 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_16848 DeepMRMD:1;iRNA_m5C:0.999536712157815 16849 chr5 912038 912038 1 + A G ACC 912029 + 912009 912049 41 CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACATTG CGTGGCCTTCGTGGACAGGGCTGACATCAGGCAGTACATTG < 41bp 1 0.362727003015796 1 0.0315431952476501 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:912029 chr5:912038 nonsynonymous SNV 0.986 1 30 hm5C_associated_SNPs_15179 0 0 1 0 2 Ribosome 1 0.500231806001178 1 0.999536387997644 hm5C_site_16849 DeepMRMD:1;iRNA_m5C:0.999536387997644 16850 chr3 33877676 33877676 1 + C T ACC 33877665 + 33877645 33877685 41 ATGACTTCATTTATCATGATCGAGTTCCAGACCTTAAAGAT ATGACTTCATTTATCATGATCGAGTTCCAGATCTTAAAGAT < 41bp 1 0.471121473263363 1 0.246382355690002 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33877665 chr3:33877676 synonymous SNV . 0 32 hm5C_associated_SNPs_15180 0 0 1 0 1 Nucleus 1 0.500231807434672 1 0.999536385130656 hm5C_site_16850 DeepMRMD:1;iRNA_m5C:0.999536385130656 16851 chr6 159086557 159086557 1 + C T ACC 159086565 + 159086545 159086585 41 GGCGCCGTGTGCCGGGGCTGCAGCCACCGCGTGTGTGCCCA GGCGCCGTGTGCTGGGGCTGCAGCCACCGCGTGTGTGCCCA < 41bp 1 0.610020321754203 1 0.587042987346649 experiment 0.779959356491593 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086565 chr6:159086557 nonsynonymous SNV 0.945 2 13 hm5C_associated_SNPs_15181 0 0 0 0 1 exosome 1 0.500231731656832 0.825914025306702 0.999536536686336 hm5C_site_16851 DeepMRMD:0.825914025306702;iRNA_m5C:0.999536536686336 16852 chr17 43247039 43247039 1 + G A ACC 43247045 + 43247025 43247065 41 TGCAGGCGTGCACCGGCCAGCAGTCCTGCCGCCAGGTGGAG TGCAGGCGTGCACCAGCCAGCAGTCCTGCCGCCAGGTGGAG < 41bp 1 0.259343622230391 1 0.205669164657593 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEXIM2 ENSG00000168517 CDS Human protein_coding chr17:43247045 chr17:43247039 nonsynonymous SNV 0.008 0 15 hm5C_associated_SNPs_15182 0 0 0 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_16852 DeepMRMD:1;iRNA_m5C:0.999536712157815 16853 chr12 56622965 56622965 1 + G A ACC 56622945 + 56622925 56622965 41 TGCAGGCCCGCCTGGCCCTTCCAGCAACCCTGTTAGTAACG TGCAGGCCCGCCTGGCCCTTCCAGCAACCCTGTTAGTAACA < 41bp 1 0.235538045564348 1 0.410408705472946 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NABP2 ENSG00000139579 CDS Human protein_coding chr12:56622945 chr12:56622965 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_15183 0 0 1 0 0 Ribosome 1 0.500231643990574 1 0.999536712018853 hm5C_site_16853 DeepMRMD:1;iRNA_m5C:0.999536712018853 16854 chr2 36739479 36739479 1 + G T ACC 36739473 + 36739453 36739493 41 AAATGTCCAGAGCTCTCATGCAGTAAGATCTGCCCCTTGGG AAATGTCCAGAGCTCTCATGCAGTAATATCTGCCCCTTGGG < 41bp 1 0.495100118808948 1 0.325673162937164 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36739473 chr2:36739479 nonsynonymous SNV 0.992 4 27 hm5C_associated_SNPs_15184 0 0 1 0 2 Nucleus 1 0.500231643963653 1 0.999536712072694 hm5C_site_16854 DeepMRMD:1;iRNA_m5C:0.999536712072694 16855 chr3 37336491 37336491 1 + G T ACC 37336473 + 37336453 37336493 41 ATCATTTTATGTTTTAGGAGCTCCAAATGGACCAGCAGGCA ATCATTTTATGTTTTAGGAGCTCCAAATGGACCAGCAGTCA < 41bp 1 0.310467204434672 1 0.525657773017883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37336473 chr3:37336491 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_15185 0 0 1 0 2 Cytosol 1 0.500231643921092 0.948684453964234 0.999536712157816 hm5C_site_16855 DeepMRMD:0.948684453964234;iRNA_m5C:0.999536712157816 16856 chr7 40085455 40085455 1 + G A ACC 40085473 + 40085453 40085493 41 TTGAATATATGGACCATGATCTGATGGGACTACTGGAATCA TTAAATATATGGACCATGATCTGATGGGACTACTGGAATCA < 41bp 1 0.246715493040797 1 0.114367127418518 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDK13 ENSG00000065883 CDS Human protein_coding chr7:40085473 chr7:40085455 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_15186 0 0 1 0 1 Nucleus 1 0.500231686942536 1 0.999536626114928 hm5C_site_16856 DeepMRMD:1;iRNA_m5C:0.999536626114928 16857 chr7 150771214 150771214 1 + G C ACC 150771233 + 150771213 150771253 41 AGACCCACGCTGGGGCCGGGCAACAGGAGCTTGGCTGGGCA ACACCCACGCTGGGGCCGGGCAACAGGAGCTTGGCTGGGCA < 41bp 1 0.646131003798431 1 0.503123164176941 experiment 0.707737992403138 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150771233 chr7:150771214 nonsynonymous SNV 0.001 0 2 hm5C_associated_SNPs_15188 0 0 1 0 1 Ribosome 1 0.500231643921057 0.993753671646118 0.999536712157886 hm5C_site_16857 DeepMRMD:0.993753671646118;iRNA_m5C:0.999536712157886 16858 chr1 114483599 114483599 1 + G T ACC 114483597 + 114483577 114483617 41 AAGTCTTGGAGTTCCTAGGCCGGGGGACATTTGGACAGGTG AAGTCTTGGAGTTCCTAGGCCGTGGGACATTTGGACAGGTG < 41bp 1 0.386562288142393 1 0.388086229562759 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114483597 chr1:114483599 synonymous SNV . 0 23 hm5C_associated_SNPs_15189 0 0 1 0 0 Cytosol 1 0.50023164392109 1 0.999536712157819 hm5C_site_16858 DeepMRMD:1;iRNA_m5C:0.999536712157819 16859 chr1 114483599 114483599 1 + G T ACC 114483612 + 114483592 114483632 41 TAGGCCGGGGGACATTTGGACAGGTGGCTAAGTGCTGGAAG TAGGCCGTGGGACATTTGGACAGGTGGCTAAGTGCTGGAAG < 41bp 1 0.636251917765319 1 0.492979496717453 experiment 0.727496164469362 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114483612 chr1:114483599 synonymous SNV . 0 8 hm5C_associated_SNPs_15190 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16859 DeepMRMD:1;iRNA_m5C:0.999536712157815 16860 chr14 65009483 65009483 1 + A G ACC 65009465 + 65009445 65009485 41 TTCAGGAGCCTCCGGGGGACCCACCATCGAAGAAGTGGACT TTCAGGAGCCTCCGGGGGACCCACCATCGAAGAAGTGGGCT < 41bp 1 0.17495492148573 1 0.315913558006287 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65009465 chr14:65009483 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_15191 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16860 DeepMRMD:1;iRNA_m5C:0.999536712157815 16861 chr12 57559628 57559628 1 + C T ACC 57559624 + 57559604 57559644 41 GCCTCCACCCCAGTGCCAGCCAGGCGAGTTTGCCTGTGCCA GCCTCCACCCCAGTGCCAGCCAGGTGAGTTTGCCTGTGCCA < 41bp 1 0.220262525249799 1 0.912267208099365 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57559624 chr12:57559628 synonymous SNV . 0 25 hm5C_associated_SNPs_15192 0 0 1 0 1 Exosome 1 0.500231770716645 0.17546558380127 0.999536458566709 hm5C_site_16861 DeepMRMD:0.17546558380127;iRNA_m5C:0.999536458566709 16862 chr10 118318731 118318731 1 + T G ACC 118318713 + 118318693 118318733 41 GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCTGG GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCGGG < 41bp 1 0.309821431423837 1 0.0955508947372437 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318713 chr10:118318731 synonymous SNV . 0 39 hm5C_associated_SNPs_15193 0 0 0 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_16862 DeepMRMD:1;iRNA_m5C:0.999536712157815 16863 chr10 118318731 118318731 1 + T G ACC 118318718 + 118318698 118318738 41 CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAA CCCACAGATGGGTCACTATGCTGATAGATATCCGGGGAAAA < 41bp 1 0.514935006070385 1 0.199554324150085 experiment 0.97012998785923 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318718 chr10:118318731 synonymous SNV . 0 34 hm5C_associated_SNPs_15194 0 0 0 0 2 unknown 1 0.500231696646408 1 0.999536606707185 hm5C_site_16863 DeepMRMD:1;iRNA_m5C:0.999536606707185 16864 chr11 1471882 1471882 1 + G A ACC 1471896 + 1471876 1471916 41 CCACACGCCAAAGGAGAGCCCGGCTGGCACGCCCAACCCCA CCACACACCAAAGGAGAGCCCGGCTGGCACGCCCAACCCCA < 41bp 1 0.694113262037381 1 0.505835950374603 experiment 0.611773475925238 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1471896 chr11:1471882 synonymous SNV . 0 7 hm5C_associated_SNPs_15195 0 0 0 0 0 exosome 1 0.500231643921092 0.988328099250794 0.999536712157815 hm5C_site_16864 DeepMRMD:0.988328099250794;iRNA_m5C:0.999536712157815 16865 chr10 45484790 45484790 1 + G A ACC 45484778 + 45484758 45484798 41 AATGTGAGGGTCAACAGCACCATGACAACCCTGCAGGTGCT AATGTGAGGGTCAACAGCACCATGACAACCCTACAGGTGCT < 41bp 1 0.553379701472796 1 0.479165613651276 experiment 0.893240597054409 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45484778 chr10:45484790 synonymous SNV . 0 33 hm5C_associated_SNPs_15196 0 0 1 0 1 Cytosol 1 0.500231622661788 1 0.999536754676424 hm5C_site_16865 DeepMRMD:1;iRNA_m5C:0.999536754676424 16866 chr19 4409751 4409751 1 + C T ACC 4409753 + 4409733 4409773 41 CCCACCTCCACGCCCCTCCGCAGAGTGAGTATCTCCCATGG CCCACCTCCACGCCCCTCTGCAGAGTGAGTATCTCCCATGG < 41bp 1 0.506072323386357 1 0.81281054019928 experiment 0.987855353227287 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4409753 chr19:4409751 nonsynonymous SNV 0.097 0 19 hm5C_associated_SNPs_15197 0 0 1 0 0 Nucleus 1 0.500231643919478 0.37437891960144 0.999536712161044 hm5C_site_16866 DeepMRMD:0.37437891960144;iRNA_m5C:0.999536712161044 16867 chr9 130164929 130164929 1 + G A ACC 130164924 + 130164904 130164944 41 ATGTGCTTCATGCCCGAGACCCCGCGCTTCCTGCTGACTCA ATGTGCTTCATGCCCGAGACCCCGCACTTCCTGCTGACTCA < 41bp 1 0.223669218954456 1 0.0918110013008118 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A8 ENSG00000136856 CDS Human protein_coding chr9:130164924 chr9:130164929 nonsynonymous SNV 0.987 3 26 hm5C_associated_SNPs_15198 0 0 1 0 1 Endoplasmic reticulum 1 0.500231596572133 1 0.999536806855734 hm5C_site_16867 DeepMRMD:1;iRNA_m5C:0.999536806855734 16868 chr7 130021521 130021521 1 + A G ACC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGT < 41bp 1 0.229907018271546 1 0.122661769390106 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021521 synonymous SNV . 0 39 hm5C_associated_SNPs_15200 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643895656 1 0.999536712208687 hm5C_site_16868 DeepMRMD:1;iRNA_m5C:0.999536712208687 16869 chr7 130021521 130021521 1 + A G ACC 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGC < 41bp 1 0.236426661514852 1 0.0332609117031097 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021521 synonymous SNV . 0 37 hm5C_associated_SNPs_15201 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16869 DeepMRMD:1;iRNA_m5C:0.999536712157815 16870 chr7 130021521 130021521 1 + A G ACC 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGCC < 41bp 1 0.469246051423297 1 0.416269570589066 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021521 synonymous SNV . 0 36 hm5C_associated_SNPs_15202 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164475959 1 0.99953671048082 hm5C_site_16870 DeepMRMD:1;iRNA_m5C:0.99953671048082 16871 chr7 130021521 130021521 1 + A G ACC 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGCCC < 41bp 1 0.11216530914391 1 0.0616657435894012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021521 synonymous SNV . 0 35 hm5C_associated_SNPs_15203 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_16871 DeepMRMD:1;iRNA_m5C:0.999536712157818 16872 chr7 130021521 130021521 1 + A G ACC 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGCCCT < 41bp 1 0.0619215374256849 1 0.462299406528473 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021521 synonymous SNV . 0 34 hm5C_associated_SNPs_15204 0 0 0 0 2 Endoplasmic reticulum 1 0.500233473541457 1 0.999533052917087 hm5C_site_16872 DeepMRMD:1;iRNA_m5C:0.999533052917087 16873 chr7 130021521 130021521 1 + A G ACC 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTCCCCCATCGACGTCCGGGTGCCCTT < 41bp 1 0.415931668377243 1 0.206031054258347 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021521 synonymous SNV . 0 33 hm5C_associated_SNPs_15205 0 0 0 0 2 Endoplasmic reticulum 1 0.500104670916391 1 0.999790658167218 hm5C_site_16873 DeepMRMD:1;iRNA_m5C:0.999790658167218 16874 chr7 130021521 130021521 1 + A G ACC 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTCCCCCATCGACGTCCGGGTGCCCTTCCCCAG < 41bp 1 0.435953943151567 1 0.165007948875427 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021521 synonymous SNV . 0 27 hm5C_associated_SNPs_15206 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16874 DeepMRMD:1;iRNA_m5C:0.999536712157815 16875 chr7 130021521 130021521 1 + A G ACC 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTCCCCCATCGACGTCCGGGTGCCCTTCCCCAGCATC < 41bp 1 0.584644325975132 1 0.817875146865845 experiment 0.830711348049735 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021521 synonymous SNV . 0 23 hm5C_associated_SNPs_15208 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.36424970626831 0.999536712157815 hm5C_site_16875 DeepMRMD:0.36424970626831;iRNA_m5C:0.999536712157815 16876 chr7 130021521 130021521 1 + A G ACC 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG CCCCCATCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0585811544994315 1 0.0111385583877563 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021521 synonymous SNV . 0 17 hm5C_associated_SNPs_15209 0 0 0 0 2 Endoplasmic reticulum 1 0.500231403976986 1 0.999537192046028 hm5C_site_16876 DeepMRMD:1;iRNA_m5C:0.999537192046028 16877 chr7 130021521 130021521 1 + A G ACC 130021526 + 130021506 130021546 41 CCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGG CCCCATCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGG < 41bp 1 0.0286916401616915 1 0.0413260459899902 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021526 chr7:130021521 synonymous SNV . 0 16 hm5C_associated_SNPs_15210 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_16877 DeepMRMD:1;iRNA_m5C:0.999536712157816 16878 chr7 130021521 130021521 1 + A G ACC 130021527 + 130021507 130021547 41 CCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGT CCCATCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGGT < 41bp 1 0.171762194621198 1 0.0769788920879364 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021527 chr7:130021521 synonymous SNV . 0 15 hm5C_associated_SNPs_15211 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164371804 1 0.999536712563919 hm5C_site_16878 DeepMRMD:1;iRNA_m5C:0.999536712563919 16879 chr7 130021521 130021521 1 + A G ACC 130021531 + 130021511 130021551 41 TCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG TCGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGGTCAAG < 41bp 1 0.370434471764249 1 0.768978595733643 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021531 chr7:130021521 synonymous SNV . 0 11 hm5C_associated_SNPs_15213 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644033255 0.462042808532714 0.99953671193349 hm5C_site_16879 DeepMRMD:0.462042808532714;iRNA_m5C:0.99953671193349 16880 chr7 130021521 130021521 1 + A G ACC 130021532 + 130021512 130021552 41 CGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA CGACGTCCGGGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA < 41bp 1 0.386586963323561 1 0.304381161928177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021532 chr7:130021521 synonymous SNV . 0 10 hm5C_associated_SNPs_15214 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_16880 DeepMRMD:1;iRNA_m5C:0.999536712157815 16881 chr7 130021521 130021521 1 + A G ACC 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTCCGGGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT < 41bp 1 0.159655907572367 1 0.143982738256454 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021521 synonymous SNV . 0 6 hm5C_associated_SNPs_15215 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16881 DeepMRMD:1;iRNA_m5C:0.999536712157815 16882 chr7 130021521 130021521 1 + A G ACC 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT CGGGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT < 41bp 1 0.394718193535848 1 0.327404767274857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021521 synonymous SNV . 0 3 hm5C_associated_SNPs_15216 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643919004 1 0.999536712161993 hm5C_site_16882 DeepMRMD:1;iRNA_m5C:0.999536712161993 16883 chr5 172315747 172315747 1 + G A ACC 172315759 + 172315739 172315779 41 CAGCCAACGTACACCGGGGCCATTAGTGAGTAGCCAACCTC CAGCCAACATACACCGGGGCCATTAGTGAGTAGCCAACCTC < 41bp 1 0.132998882898577 1 0.0603305399417877 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172315759 chr5:172315747 synonymous SNV . 0 9 hm5C_associated_SNPs_15218 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_16883 DeepMRMD:1;iRNA_m5C:0.999536712157815 16884 chr19 38780794 38780794 1 + C T ACC 38780801 + 38780781 38780821 41 CACTGGGCCTTGCCGTGCATCCTTCCCACGCTGGTACTTTG CACTGGGCCTTGCTGTGCATCCTTCCCACGCTGGTACTTTG < 41bp 1 0.0142921336865057 1 0.083954930305481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPINT2 ENSG00000167642;ENSG00000267748 CDS Human other chr19:38780801 chr19:38780794 nonsynonymous SNV 0.697 4 14 hm5C_associated_SNPs_15220 0 0 1 0 1 Ribosome 1 0.50023164420883 1 0.999536711582339 hm5C_site_16884 DeepMRMD:1;iRNA_m5C:0.999536711582339 16885 chr6 7393387 7393387 1 + C T ACC 7393371 + 7393351 7393391 41 ACAGTCAAAGAGAAGGATGACATTCTGTTTGAAGACCTTCA ACAGTCAAAGAGAAGGATGACATTCTGTTTGAAGACTTTCA < 41bp 1 0.0683799153216622 1 0.0457217991352081 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7393371 chr6:7393387 nonsynonymous SNV 0.024 0 37 hm5C_associated_SNPs_15222 0 0 1 0 1 Ribosome 1 0.50023169732707 1 0.999536605345859 hm5C_site_16885 DeepMRMD:1;iRNA_m5C:0.999536605345859 16886 chr7 99701292 99701292 1 + G A ACC 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCGCCCCATCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA < 41bp 1 0.397398693898614 1 0.286275714635849 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701292 nonsynonymous SNV 0.975 1 9 hm5C_associated_SNPs_15223 0 0 1 0 2 Cytosol 1 0.500231632756554 1 0.999536734486891 hm5C_site_16886 DeepMRMD:1;iRNA_m5C:0.999536734486891 16887 chr7 76111983 76111983 1 + G A ACC 76111966 + 76111946 76111986 41 CTATCTGGAGCAGCAGGTGGCCAGGGGCAACCAGCTCGTGG CTATCTGGAGCAGCAGGTGGCCAGGGGCAACCAGCTCATGG < 41bp 1 0.457213776870086 1 0.842190861701965 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DTX2 ENSG00000091073 CDS Human protein_coding chr7:76111966 chr7:76111983 nonsynonymous SNV 0.890 4 38 hm5C_associated_SNPs_15224 0 0 0 0 0 Nucleus 1 0.50023168309103 0.31561827659607 0.99953663381794 hm5C_site_16887 DeepMRMD:0.31561827659607;iRNA_m5C:0.99953663381794 16888 chr3 9854684 9854684 1 + C T BLCA 9854668 + 9854648 9854688 41 CAAGGCTGCTACCCGGTGATCCGGTGTCTCTTGCGCCGGAG CAAGGCTGCTACCCGGTGATCCGGTGTCTCTTGCGCTGGAG < 41bp 1 0.413516553498184 1 0.749848008155823 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9854668 chr3:9854684 nonsynonymous SNV 0.864 1 37 hm5C_associated_SNPs_15225 0 0 1 0 1 unknown 1 0.500231643797366 0.500303983688354 0.999536712405269 hm5C_site_16888 DeepMRMD:0.500303983688354;iRNA_m5C:0.999536712405269 16889 chr7 44098978 44098978 1 + G C BLCA 44098968 + 44098948 44098988 41 TGCAGGCAAGCTGAGGAGCCCCTTCCTGCAGAAGCAGCTCA TGCAGGCAAGCTGAGGAGCCCCTTCCTGCACAAGCAGCTCA < 41bp 1 0.020922217680845 1 0.0257122218608856 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44098968 chr7:44098978 nonsynonymous SNV 0.999 2 31 hm5C_associated_SNPs_15226 0 0 1 0 1 Ribosome 1 0.50023164443972 1 0.99953671112056 hm5C_site_16889 DeepMRMD:1;iRNA_m5C:0.99953671112056 16890 chr17 30325880 30325880 1 + C T BLCA 30325888 + 30325868 30325908 41 AAAAGGGGGAATCTGCTTCCCCTGCAAACGAAGAAATAACT AAAAGGGGGAATTTGCTTCCCCTGCAAACGAAGAAATAACT < 41bp 1 0.0621106777693345 1 0.292006433010101 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30325888 chr17:30325880 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_15227 0 0 1 0 0 Ribosome 1 0.500231643900117 1 0.999536712199765 hm5C_site_16890 DeepMRMD:1;iRNA_m5C:0.999536712199765 16891 chr8 25181401 25181401 1 + C T BLCA 25181381 + 25181361 25181401 41 CAGCCAGAGATAAATCGGAGCGAGCATTTGGGGTGGCCTTC CAGCCAGAGATAAATCGGAGCGAGCATTTGGGGTGGCCTTT < 41bp 1 0.149341170759757 1 0.362023800611496 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25181381 chr8:25181401 synonymous SNV . 0 41 hm5C_associated_SNPs_15228 0 0 1 0 3 Nucleus 1 0.500231643769901 1 0.999536712460197 hm5C_site_16891 DeepMRMD:1;iRNA_m5C:0.999536712460197 16892 chr1 180794031 180794031 1 + C T BLCA 180794028 + 180794008 180794048 41 GCTGGAGTAAACCATGTACTCATCTTTGAACTTAATCCGAG GCTGGAGTAAACCATGTACTCATTTTTGAACTTAATCCGAG < 41bp 1 0.193331097317247 1 0.369758248329163 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control XPR1 ENSG00000143324 CDS Human protein_coding chr1:180794028 chr1:180794031 synonymous SNV . 0 24 hm5C_associated_SNPs_15229 0 0 1 0 1 Ribosome 1 0.500231641018864 1 0.999536717962272 hm5C_site_16892 DeepMRMD:1;iRNA_m5C:0.999536717962272 16893 chr12 6973993 6973993 1 + C T BLCA 6974006 + 6973986 6974026 41 ACTCCATCTCTGAGTCTGTGCCAGTGGGACCTAAAGTCCGG ACTCCATTTCTGAGTCTGTGCCAGTGGGACCTAAAGTCCGG < 41bp 1 0.339491699049995 1 0.240573316812515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6974006 chr12:6973993 synonymous SNV . 0 8 hm5C_associated_SNPs_15230 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16893 DeepMRMD:1;iRNA_m5C:0.999536712157815 16894 chr1 44083231 44083231 1 + C G BLCA 44083229 + 44083209 44083249 41 CACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG CACTCTCGAGTCATCCTTACCTGTATCGATGGTGAGCCAAG < 41bp 1 0.417299849118504 1 0.292266309261322 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083229 chr1:44083231 nonsynonymous SNV 0.935 2 23 hm5C_associated_SNPs_15231 0 0 0 0 1 Ribosome 1 0.500231643925449 1 0.999536712149103 hm5C_site_16894 DeepMRMD:1;iRNA_m5C:0.999536712149103 16895 chr7 150707855 150707855 1 + G A BLCA 150707858 + 150707838 150707878 41 AGCACCCACCCAGGAGAGATCCACCTCACTGTAGCTGTGCT AGCACCCACCCAGGAGAAATCCACCTCACTGTAGCTGTGCT < 41bp 1 0.0939481993696318 1 0.456721007823944 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOS3 ENSG00000164867 CDS Human protein_coding chr7:150707858 chr7:150707855 synonymous SNV . 0 18 hm5C_associated_SNPs_15232 0 0 0 0 0 chromatin 1 0.500231643921212 1 0.999536712157576 hm5C_site_16895 DeepMRMD:1;iRNA_m5C:0.999536712157576 16896 chr1 150280534 150280534 1 + G T BLCA 150280549 + 150280529 150280569 41 ATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT ATTATTAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT < 41bp 1 0.68063651598352 1 0.747945666313171 experiment 0.63872696803296 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280549 chr1:150280534 stopgain 0.999 0 6 hm5C_associated_SNPs_15233 0 0 1 0 1 Cytosol 1 0.500231643918411 0.504108667373658 0.999536712163178 hm5C_site_16896 DeepMRMD:0.504108667373658;iRNA_m5C:0.999536712163178 16897 chr19 54377329 54377329 1 + C T BLCA 54377326 + 54377306 54377346 41 CTGCTGAAGGTGCTGGAGACCTTCGTTGCCTGCATCATCTT CTGCTGAAGGTGCTGGAGACCTTTGTTGCCTGCATCATCTT < 41bp 1 0.226168471797586 1 0.271077245473862 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYADM ENSG00000179820 CDS Human protein_coding chr19:54377326 chr19:54377329 synonymous SNV . 0 24 hm5C_associated_SNPs_15235 0 0 1 0 0 Nucleus 1 0.500231643909837 1 0.999536712180326 hm5C_site_16897 DeepMRMD:1;iRNA_m5C:0.999536712180326 16898 chr5 908553 908553 1 + G A BLCA 908541 + 908521 908561 41 TCAGATGCCATCCGCGTGGTCAATGCTGTCTTGACCCAAAT TCAGATGCCATCCGCGTGGTCAATGCTGTCTTAACCCAAAT < 41bp 1 0.36195163000525 1 0.195208191871643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908541 chr5:908553 synonymous SNV . 0 33 hm5C_associated_SNPs_15236 0 0 0 0 2 Ribosome 1 0.50023150233935 1 0.999536995321301 hm5C_site_16898 DeepMRMD:1;iRNA_m5C:0.999536995321301 16899 chr19 1272166 1272166 1 + C T BLCA 1272179 + 1272159 1272199 41 GTGCTTGCCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCAT GTGCTTGTCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCAT < 41bp 1 0.134396396672642 1 0.178918033838272 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272179 chr19:1272166 synonymous SNV . 0 8 hm5C_associated_SNPs_15237 0 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16899 DeepMRMD:1;iRNA_m5C:0.999536712157815 16900 chr19 1272166 1272166 1 + C T BLCA 1272182 + 1272162 1272202 41 CTTGCCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCATTTC CTTGTCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCATTTC < 41bp 1 0.332576653366225 1 0.0638211667537689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272182 chr19:1272166 synonymous SNV . 0 5 hm5C_associated_SNPs_15238 0 0 1 1 0 Ribosome 1 0.500229698003657 1 0.999540603992686 hm5C_site_16900 DeepMRMD:1;iRNA_m5C:0.999540603992686 16901 chr19 1440439 1440439 1 + C T BLCA 1440440 + 1440420 1440460 41 ATCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTA ATCGGGGCCACCCACTCCTTCCGCTTCATCCCTCTCAAGTA < 41bp 1 0.305478133574693 1 0.235934227705002 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440440 chr19:1440439 nonsynonymous SNV 0.967 1 20 hm5C_associated_SNPs_15239 0 0 1 0 1 Ribosome 1 0.500231638395256 1 0.999536723209489 hm5C_site_16901 DeepMRMD:1;iRNA_m5C:0.999536723209489 16902 chr19 1440439 1440439 1 + C T BLCA 1440441 + 1440421 1440461 41 TCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTAA TCGGGGCCACCCACTCCTTCCGCTTCATCCCTCTCAAGTAA < 41bp 1 0.28797147897483 1 0.440315157175064 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440441 chr19:1440439 nonsynonymous SNV 0.967 1 19 hm5C_associated_SNPs_15240 0 0 1 0 1 Ribosome 1 0.500231643918714 1 0.999536712162573 hm5C_site_16902 DeepMRMD:1;iRNA_m5C:0.999536712162573 16903 chr10 135197569 135197569 1 + T A BLCA 135197583 + 135197563 135197603 41 TCTTCCTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC TCTTCCAGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC < 41bp 1 0.0771531064538299 1 0.0571873784065247 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197583 chr10:135197569 nonsynonymous SNV 0.997 5 7 hm5C_associated_SNPs_15241 0 0 0 2 1 exosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_16903 DeepMRMD:1;iRNA_m5C:0.999536712157813 16904 chr11 33667299 33667299 1 + C G BLCA 33667280 + 33667260 33667300 41 ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCCAGGTCT ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCCAGGTGT < 41bp 1 0.263473616019131 1 0.121978282928467 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33667280 chr11:33667299 nonsynonymous SNV 0.834 2 40 hm5C_associated_SNPs_15243 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16904 DeepMRMD:1;iRNA_m5C:0.999536712157815 16905 chr14 61997260 61997260 1 + G A BLCA 61997276 + 61997256 61997296 41 TGATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA TGATAAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA < 41bp 1 0.103556060271879 1 0.092462420463562 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997276 chr14:61997260 nonsynonymous SNV 0.994 1 5 hm5C_associated_SNPs_15244 0 0 0 0 1 Cytosol 1 0.500231643921099 1 0.999536712157802 hm5C_site_16905 DeepMRMD:1;iRNA_m5C:0.999536712157802 16906 chr5 140084142 140084142 1 + G A BLCA 140084145 + 140084125 140084165 41 TTGAGGAAAGGATGAAGGAGCTCAGAGAAGAGGTAAGGGTC TTGAGGAAAGGATGAAGAAGCTCAGAGAAGAGGTAAGGGTC < 41bp 1 0.681439146131567 1 0.517048299312592 experiment 0.637121707736867 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084145 chr5:140084142 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_15245 0 0 1 0 1 Ribosome 1 0.500231643921093 0.965903401374816 0.999536712157815 hm5C_site_16906 DeepMRMD:0.965903401374816;iRNA_m5C:0.999536712157815 16907 chr9 106901537 106901537 1 + A G BLCA 106901519 + 106901499 106901539 41 CTACAGTAGCCAGATTTACTCAATGTCAAAATGGAAAGATT CTACAGTAGCCAGATTTACTCAATGTCAAAATGGAAAGGTT < 41bp 1 0.325592888891031 1 0.836594581604004 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106901519 chr9:106901537 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_15247 0 0 1 0 0 Cytosol 1 0.500231643924894 0.326810836791992 0.999536712150212 hm5C_site_16907 DeepMRMD:0.326810836791992;iRNA_m5C:0.999536712150212 16908 chr2 169626102 169626102 1 + C T BLCA 169626121 + 169626101 169626141 41 GCGACAACCACCAATGGGACCAGTGGTACCAACGGGTATCT GTGACAACCACCAATGGGACCAGTGGTACCAACGGGTATCT < 41bp 1 0.33879551883205 1 0.15611606836319 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169626121 chr2:169626102 nonsynonymous SNV 0.990 0 2 hm5C_associated_SNPs_15248 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643898748 1 0.999536712202504 hm5C_site_16908 DeepMRMD:1;iRNA_m5C:0.999536712202504 16909 chr17 57057639 57057639 1 + G T BLCA 57057658 + 57057638 57057678 41 AGAACTCTTTTCAAGGAGGGCAAGAAGATGGTGGGGATGAT ATAACTCTTTTCAAGGAGGGCAAGAAGATGGTGGGGATGAT < 41bp 1 0.417317307450904 1 0.409056752920151 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1E ENSG00000175175 CDS Human protein_coding chr17:57057658 chr17:57057639 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_15249 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16909 DeepMRMD:1;iRNA_m5C:0.999536712157815 16910 chr16 58286717 58286717 1 + G A BLCA 58286704 + 58286684 58286724 41 CTAAACTGGAGCCCAGGGATCAGCGACCTCCACGATTATCA CTAAACTGGAGCCCAGGGATCAGCGACCTCCACAATTATCA < 41bp 1 0.481590870022551 1 0.476700633764267 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58286704 chr16:58286717 nonsynonymous SNV 0.010 0 34 hm5C_associated_SNPs_15250 0 0 0 0 2 Nucleus 1 0.500231643921075 1 0.99953671215785 hm5C_site_16910 DeepMRMD:1;iRNA_m5C:0.99953671215785 16911 chr17 72239552 72239552 1 + C A BLCA 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGCTCTTTATCCTGGACCTGGTAATCTGCCTCATTGC < 41bp 1 0.159466882109273 1 0.0625333189964294 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239552 synonymous SNV . 0 27 hm5C_associated_SNPs_15251 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_16911 DeepMRMD:1;iRNA_m5C:0.999536712157815 16912 chr22 42033762 42033762 1 + G A BLCA 42033761 + 42033741 42033781 41 AAGACCTGTTGCGGAAGGTTCGCGCCAAGGAGACCAGGAAG AAGACCTGTTGCGGAAGGTTCACGCCAAGGAGACCAGGAAG < 41bp 1 0.528265732241161 1 0.478497445583344 experiment 0.943468535517678 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42033761 chr22:42033762 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_15253 0 0 1 0 1 Cytosol 1 0.50023245380613 1 0.99953509238774 hm5C_site_16912 DeepMRMD:1;iRNA_m5C:0.99953509238774 16913 chr22 42033762 42033762 1 + G A BLCA 42033765 + 42033745 42033785 41 CCTGTTGCGGAAGGTTCGCGCCAAGGAGACCAGGAAGCGAG CCTGTTGCGGAAGGTTCACGCCAAGGAGACCAGGAAGCGAG < 41bp 1 0.602618570934505 1 0.356295675039291 experiment 0.794762858130989 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42033765 chr22:42033762 nonsynonymous SNV 0.996 2 18 hm5C_associated_SNPs_15254 0 0 1 0 1 Cytosol 1 0.500231643948731 1 0.999536712102537 hm5C_site_16913 DeepMRMD:1;iRNA_m5C:0.999536712102537 16914 chr16 70589054 70589054 1 + G A BLCA 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC AGCAACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC < 41bp 1 0.295239261451154 1 0.154723137617111 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589054 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_15256 0 0 1 0 1 Cytosol 1 0.500234903891481 1 0.999530192217039 hm5C_site_16914 DeepMRMD:1;iRNA_m5C:0.999530192217039 16915 chr11 82921451 82921451 1 + G A BLCA 82921433 + 82921413 82921453 41 AACTCATGGACATTCTTTCACTTTACAAATAATGCTCCGAA AACTCATGGACATTCTTTCACTTTACAAATAATGCTCCAAA < 41bp 1 0.306713733645243 1 0.0482926666736603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82921433 chr11:82921451 nonsynonymous SNV 0.991 1 39 hm5C_associated_SNPs_15257 0 0 0 0 2 nucleus 1 0.500231741638669 1 0.999536516722661 hm5C_site_16915 DeepMRMD:1;iRNA_m5C:0.999536516722661 16916 chr20 37076748 37076748 1 + C T BLCA 37076732 + 37076712 37076752 41 TTTGCTCTTTTCTGCGCCTGCATTCGTAAGTGATCACGGGC TTTGCTCTTTTCTGCGCCTGCATTCGTAAGTGATCATGGGC < 41bp 1 0.036294397453096 1 0.0378670990467072 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA71E ENSG00000174365 ncRNA_exonic Human processed_transcript chr20:37076732 chr20:37076748 . . 0 37 hm5C_associated_SNPs_15258 0 0 1 0 0 unknown 1 0.500231643921164 1 0.999536712157672 hm5C_site_16916 DeepMRMD:1;iRNA_m5C:0.999536712157672 16917 chr11 58892634 58892634 1 + G A BLCA 58892617 + 58892597 58892637 41 CCCAGGATTAGAAATTATTACTTTTGTAGTTTGCCCCGAAA CCCAGGATTAGAAATTATTACTTTTGTAGTTTGCCCCAAAA < 41bp 1 0.176816708666783 1 0.0848742425441742 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM111B ENSG00000189057 CDS Human protein_coding chr11:58892617 chr11:58892634 nonsynonymous SNV 0.007 0 38 hm5C_associated_SNPs_15259 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16917 DeepMRMD:1;iRNA_m5C:0.999536712157815 16918 chr5 33445453 33445453 1 + A C BLCA 33445465 + 33445445 33445485 41 GAGAAGCAAAAGGAAGGAGGCAAAAAGAAGAACAAAGAAGG GAGAAGCACAAGGAAGGAGGCAAAAAGAAGAACAAAGAAGG < 41bp 1 0.505178806567191 1 0.497152715921402 experiment 0.989642386865617 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TARS ENSG00000113407 CDS Human protein_coding chr5:33445465 chr5:33445453 nonsynonymous SNV 0.975 0 9 hm5C_associated_SNPs_15260 0 0 1 0 2 Nucleus 1 0.500231643921156 1 0.999536712157689 hm5C_site_16918 DeepMRMD:1;iRNA_m5C:0.999536712157689 16919 chr11 68363567 68363567 1 + C T BLCA 68363565 + 68363545 68363585 41 TGGGTCTTGTTTTTCCTTAGCTCGGGGAGTACAGACAGTGA TGGGTCTTGTTTTTCCTTAGCTTGGGGAGTACAGACAGTGA < 41bp 1 0.387742341537738 1 0.406933605670929 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363565 chr11:68363567 nonsynonymous SNV 0.938 3 23 hm5C_associated_SNPs_15261 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16919 DeepMRMD:1;iRNA_m5C:0.999536712157815 16920 chr11 68363567 68363567 1 + C T BLCA 68363576 + 68363556 68363596 41 TTTCCTTAGCTCGGGGAGTACAGACAGTGAGGAAAGTACAG TTTCCTTAGCTTGGGGAGTACAGACAGTGAGGAAAGTACAG < 41bp 1 0.223157016834509 1 0.484497457742691 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363576 chr11:68363567 nonsynonymous SNV 0.938 3 12 hm5C_associated_SNPs_15262 0 0 1 0 1 Nucleus 1 0.500231433016868 1 0.999537133966265 hm5C_site_16920 DeepMRMD:1;iRNA_m5C:0.999537133966265 16921 chr4 174239626 174239626 1 + G A BLCA 174239643 + 174239623 174239663 41 CCAGTGTTTGACAAAGGGAGCTGATGGATCAAAAGTTATGA CCAATGTTTGACAAAGGGAGCTGATGGATCAAAAGTTATGA < 41bp 1 0.177739650240503 1 0.0751466155052185 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174239643 chr4:174239626 synonymous SNV . 0 4 hm5C_associated_SNPs_15263 0 0 1 0 2 chromatin 1 0.500231643920992 1 0.999536712158017 hm5C_site_16921 DeepMRMD:1;iRNA_m5C:0.999536712158017 16922 chr21 38853090 38853090 1 + G A BLCA 38853089 + 38853069 38853109 41 GAAAAGTGGATGGATCGTTACGAAATTGACTCCTTGATAGG GAAAAGTGGATGGATCGTTACAAAATTGACTCCTTGATAGG < 41bp 1 0.589018839228191 1 0.493883311748505 experiment 0.821962321543619 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38853089 chr21:38853090 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_15264 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16922 DeepMRMD:1;iRNA_m5C:0.999536712157815 16923 chr10 105179351 105179351 1 + G T BLCA 105179366 + 105179346 105179386 41 CCCAAGAACTTCTCAGAAATCCATCCTGGAATGCTGCTCAT CCCAATAACTTCTCAGAAATCCATCCTGGAATGCTGCTCAT < 41bp 1 0.0655291428797075 1 0.162154346704483 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105179366 chr10:105179351 nonsynonymous SNV 0.849 3 6 hm5C_associated_SNPs_15265 0 0 1 0 1 Nucleus 1 0.500231643905319 1 0.999536712189362 hm5C_site_16923 DeepMRMD:1;iRNA_m5C:0.999536712189362 16924 chr16 29818106 29818106 1 + G T BLCA 29818116 + 29818096 29818136 41 GCGGCCTCATGAACTCCTTCCCGCCACCTCAGGGTCACGCC GCGGCCTCATTAACTCCTTCCCGCCACCTCAGGGTCACGCC < 41bp 1 0.187001844599628 1 0.0827507078647614 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29818116 chr16:29818106 nonsynonymous SNV 0.998 0 11 hm5C_associated_SNPs_15266 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_16924 DeepMRMD:1;iRNA_m5C:0.999536712157815 16925 chr1 116942124 116942124 1 + T G BLCA 116942108 + 116942088 116942128 41 TGAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTG TGAAGAGACAGCCCAGAAATCCCAAAACAGACAAACGTGTG < 41bp 1 0.452551151596438 1 0.433295667171478 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942108 chr1:116942124 nonsynonymous SNV 0.988 5 37 hm5C_associated_SNPs_15268 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16925 DeepMRMD:1;iRNA_m5C:0.999536712157815 16926 chr1 116942124 116942124 1 + T G BLCA 116942109 + 116942089 116942129 41 GAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTGA GAAGAGACAGCCCAGAAATCCCAAAACAGACAAACGTGTGA < 41bp 1 0.221022915112388 1 0.349892318248749 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942109 chr1:116942124 nonsynonymous SNV 0.988 5 36 hm5C_associated_SNPs_15269 0 0 1 0 2 Nucleus 1 0.500231643244369 1 0.999536713511262 hm5C_site_16926 DeepMRMD:1;iRNA_m5C:0.999536713511262 16927 chr1 116942124 116942124 1 + T G BLCA 116942110 + 116942090 116942130 41 AAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTGAA AAGAGACAGCCCAGAAATCCCAAAACAGACAAACGTGTGAA < 41bp 1 0.579971612317062 1 0.50360518693924 experiment 0.840056775365876 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942110 chr1:116942124 nonsynonymous SNV 0.988 5 35 hm5C_associated_SNPs_15270 0 0 1 0 2 Nucleus 1 0.500231643921092 0.99278962612152 0.999536712157815 hm5C_site_16927 DeepMRMD:0.99278962612152;iRNA_m5C:0.999536712157815 16928 chr6 110062695 110062695 1 + G T BLCA 110062698 + 110062678 110062718 41 CACTCTAATAGCTAGAAGATCCAGTAAATTTGCTGGCACCC CACTCTAATAGCTAGAATATCCAGTAAATTTGCTGGCACCC < 41bp 1 0.235752639010202 1 0.840641379356384 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110062698 chr6:110062695 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_15271 0 0 0 0 2 Cytosol 1 0.500231643919024 0.318717241287232 0.999536712161952 hm5C_site_16928 DeepMRMD:0.318717241287232;iRNA_m5C:0.999536712161952 16929 chr1 227618480 227618480 1 + A G BLCA 227618466 + 227618446 227618486 41 TCCATGCCAGTACAAGATCCCGGACTGGTTCTTGAACAGAC TCCATGCCAGTACAAGATCCCGGACTGGTTCTTGGACAGAC < 41bp 1 0.206451843724382 1 0.367390275001526 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC42BPA;ZNF678 ENSG00000234277;ENSG00000242757 ncRNA_exonic Human other chr1:227618466 chr1:227618480 . . 0 35 hm5C_associated_SNPs_15272 0 0 0 0 0 unknown 1 0.500231643921042 1 0.999536712157915 hm5C_site_16929 DeepMRMD:1;iRNA_m5C:0.999536712157915 16930 chr7 150725686 150725686 1 + C A BLCA 150725672 + 150725652 150725692 41 GCAGGCTGCTACCGCCCCTCCGCTTCCAGACATTCTCAGCT GCAGGCTGCTACCGCCCCTCCGCTTCCAGACATTATCAGCT < 41bp 1 0.113484114083894 1 0.249595046043396 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150725672 chr7:150725686 nonsynonymous SNV 0.984 4 35 hm5C_associated_SNPs_15273 0 0 1 0 1 Ribosome 1 0.50023164756698 1 0.99953670486604 hm5C_site_16930 DeepMRMD:1;iRNA_m5C:0.99953670486604 16931 chr17 43220893 43220893 1 + C T BLCA 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TTGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG < 41bp 1 0.390368538462417 1 0.840431034564972 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220893 nonsynonymous SNV 0.993 1 2 hm5C_associated_SNPs_15274 0 0 1 0 1 Cytosol 1 0.500231643519643 0.319137930870056 0.999536712960714 hm5C_site_16931 DeepMRMD:0.319137930870056;iRNA_m5C:0.999536712960714 16932 chr13 33349165 33349165 1 + G A BLCA 33349182 + 33349162 33349202 41 GGCGAAGTGCTAAAAGGGAACGGCGATGAACAAATGTAATT GGCAAAGTGCTAAAAGGGAACGGCGATGAACAAATGTAATT < 41bp 1 0.448436512546335 1 0.468169450759888 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDS5B ENSG00000083642 CDS Human protein_coding chr13:33349182 chr13:33349165 nonsynonymous SNV 0.994 4 4 hm5C_associated_SNPs_15275 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16932 DeepMRMD:1;iRNA_m5C:0.999536712157815 16933 chr18 48446835 48446835 1 + G A BLCA 48446838 + 48446818 48446858 41 GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGAAGA GTTTTTAGATATGGCCGAAACACACTCATTCAGTTCGAAGA < 41bp 1 0.354313462737879 1 0.148431718349457 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ME2 ENSG00000082212 CDS Human protein_coding chr18:48446838 chr18:48446835 synonymous SNV . 0 18 hm5C_associated_SNPs_15276 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16933 DeepMRMD:1;iRNA_m5C:0.999536712157815 16934 chr3 158383145 158383145 1 + C A BLCA 158383132 + 158383112 158383152 41 TTCTTCTTTTAAAGAACGATCTGGAAAAATTTTCAAAAGGT TTCTTCTTTTAAAGAACGATCTGGAAAAATTTTAAAAAGGT < 41bp 1 0.582311790146532 1 0.671042263507843 experiment 0.835376419706936 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GFM1 ENSG00000168827 CDS Human protein_coding chr3:158383132 chr3:158383145 stopgain 1.000 1 34 hm5C_associated_SNPs_15277 0 0 0 0 1 Nucleus 1 0.50023180486989 0.657915472984314 0.99953639026022 hm5C_site_16934 DeepMRMD:0.657915472984314;iRNA_m5C:0.99953639026022 16935 chr9 101777744 101777744 1 + G A BLCA 101777755 + 101777735 101777775 41 GCTGCAACCGAAGTGTCCCTCAGTACTTTTGAGGATGAGGA GCTGCAACCAAAGTGTCCCTCAGTACTTTTGAGGATGAGGA < 41bp 1 0.224094728558217 1 0.71942126750946 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101777755 chr9:101777744 nonsynonymous SNV 0.002 1 10 hm5C_associated_SNPs_15278 0 0 0 0 0 Endoplasmic reticulum 1 0.500231642780632 0.56115746498108 0.999536714438737 hm5C_site_16935 DeepMRMD:0.56115746498108;iRNA_m5C:0.999536714438737 16936 chr17 42427048 42427048 1 + G A BLCA 42427030 + 42427010 42427050 41 ATGCAGGTTTCTCTGTGTTCCACAGGCCGTGGCATGCGGGG ATGCAGGTTTCTCTGTGTTCCACAGGCCGTGGCATGCGAGG < 41bp 1 0.571027532554935 1 0.583874642848969 experiment 0.85794493489013 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42427030 chr17:42427048 nonsynonymous SNV 0.005 0 39 hm5C_associated_SNPs_15279 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643923322 0.832250714302062 0.999536712153356 hm5C_site_16936 DeepMRMD:0.832250714302062;iRNA_m5C:0.999536712153356 16937 chr7 128486893 128486893 1 + G A BLCA 128486898 + 128486878 128486918 41 GGTAGCTGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA GGTAGCTGCACCGTGAAGTACATCCCCTTCACTCCTGGAGA < 41bp 1 0.0405495353745744 1 0.0532926321029663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486898 chr7:128486893 nonsynonymous SNV 0.993 5 16 hm5C_associated_SNPs_15280 0 0 1 0 2 chromatin 1 0.500231643921272 1 0.999536712157457 hm5C_site_16937 DeepMRMD:1;iRNA_m5C:0.999536712157457 16938 chr6 44199825 44199825 1 + G A BLCA 44199838 + 44199818 44199858 41 CAGCATCGCAGGCAGCAGCACCTGGGGTGAGGATGCCACAG CAGCATCACAGGCAGCAGCACCTGGGGTGAGGATGCCACAG < 41bp 1 0.300002074197559 1 0.444830775260925 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44199838 chr6:44199825 nonsynonymous SNV 0.497 0 8 hm5C_associated_SNPs_15281 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643922555 1 0.99953671215489 hm5C_site_16938 DeepMRMD:1;iRNA_m5C:0.99953671215489 16939 chr13 115090580 115090580 1 + A G BLCA 115090577 + 115090557 115090597 41 CCAGTGTCTCCAGAGCTTCGCAAACCCGGCCCACCACTATC CCAGTGTCTCCAGAGCTTCGCAAGCCCGGCCCACCACTATC < 41bp 1 0.489644040695509 1 0.419834792613983 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115090577 chr13:115090580 synonymous SNV . 0 24 hm5C_associated_SNPs_15282 0 0 1 0 0 nucleus 1 0.500231643926713 1 0.999536712146573 hm5C_site_16939 DeepMRMD:1;iRNA_m5C:0.999536712146573 16940 chr1 22307567 22307567 1 + C T BLCA 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTATGACCGTGCTGTGAAGGAGGGCCC < 41bp 1 0.380210858895551 1 0.56317001581192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307567 synonymous SNV . 0 18 hm5C_associated_SNPs_15284 0 0 0 0 2 unknown 1 0.50023164486296 0.87365996837616 0.99953671027408 hm5C_site_16940 DeepMRMD:0.87365996837616;iRNA_m5C:0.99953671027408 16941 chr1 22307567 22307567 1 + C T BLCA 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTATGACCGTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.568013785847324 1 0.0891948342323303 experiment 0.863972428305351 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307567 synonymous SNV . 0 13 hm5C_associated_SNPs_15285 0 0 0 0 2 unknown 1 0.500231651709792 1 0.999536696580415 hm5C_site_16941 DeepMRMD:1;iRNA_m5C:0.999536696580415 16942 chr1 104115861 104115861 1 + G T BLCA 104115858 + 104115838 104115878 41 AAAACTGGAAGTGGAGATATCGAGAACTACAATGATGCTAC AAAACTGGAAGTGGAGATATCGATAACTACAATGATGCTAC < 41bp 1 0.571648194611677 1 0.787748396396637 experiment 0.856703610776645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115858 chr1:104115861 nonsynonymous SNV 0.433 1 24 hm5C_associated_SNPs_15286 0 0 0 0 1 exosome 1 0.500231643916947 0.424503207206726 0.999536712166107 hm5C_site_16942 DeepMRMD:0.424503207206726;iRNA_m5C:0.999536712166107 16943 chr1 104115861 104115861 1 + G T BLCA 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATCGATAACTACAATGATGCTACTCAGGTAAATTTTTTTA < 41bp 1 0.202860900683088 1 0.0716429054737091 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115861 nonsynonymous SNV 0.433 1 7 hm5C_associated_SNPs_15287 0 0 0 0 1 exosome 1 0.500231643386476 1 0.999536713227047 hm5C_site_16943 DeepMRMD:1;iRNA_m5C:0.999536713227047 16944 chr1 39799722 39799722 1 + C A BLCA 39799715 + 39799695 39799735 41 ACAGTTGTGCAGTCCATTGACAGAGGTCTTTTGGAGAGAGA ACAGTTGTGCAGTCCATTGACAGAGGTATTTTGGAGAGAGA < 41bp 1 0.210929816208324 1 0.79917186498642 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MACF1 ENSG00000127603 CDS Human protein_coding chr1:39799715 chr1:39799722 nonsynonymous SNV 0.989 0 28 hm5C_associated_SNPs_15288 0 0 1 0 0 Endoplasmic reticulum 1 0.500231725642952 0.40165627002716 0.999536548714096 hm5C_site_16944 DeepMRMD:0.40165627002716;iRNA_m5C:0.999536548714096 16945 chr7 44100395 44100395 1 + C T BLCA 44100392 + 44100372 44100412 41 GCAGCCGACGACACAGAGATCTCCTTTGACCCCGAGAACCT GCAGCCGACGACACAGAGATCTCTTTTGACCCCGAGAACCT < 41bp 1 0.317676366944295 1 0.171483367681503 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44100392 chr7:44100395 synonymous SNV . 0 24 hm5C_associated_SNPs_15289 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_16945 DeepMRMD:1;iRNA_m5C:0.999536712157813 16946 chr20 30795782 30795782 1 + C T BLCA 30795786 + 30795766 30795806 41 CGGCCGCTGAGCGTGTCTTTCCTGCTGCTGCTTCTGCCGCT CGGCCGCTGAGCGTGTTTTTCCTGCTGCTGCTTCTGCCGCT < 41bp 1 0.441107514107279 1 0.154585927724838 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POFUT1 ENSG00000101346 CDS Human protein_coding chr20:30795786 chr20:30795782 nonsynonymous SNV 0.048 0 17 hm5C_associated_SNPs_15290 0 0 1 0 1 Endoplasmic reticulum 1 0.500231770626911 1 0.999536458746179 hm5C_site_16946 DeepMRMD:1;iRNA_m5C:0.999536458746179 16947 chr10 126205772 126205772 1 + C A BLCA 126205754 + 126205734 126205774 41 TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATCGT TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATAGT < 41bp 1 0.456148194384327 1 0.154253631830215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126205754 chr10:126205772 synonymous SNV . 0 39 hm5C_associated_SNPs_15291 0 0 0 0 2 Ribosome 1 0.500231643916288 1 0.999536712167424 hm5C_site_16947 DeepMRMD:1;iRNA_m5C:0.999536712167424 16948 chr11 64032897 64032897 1 + C T BLCA 64032900 + 64032880 64032920 41 CATCAGCGGAAGGCAGTCACCCTCACCCGCCGCCTGCTGGA CATCAGCGGAAGGCAGTTACCCTCACCCGCCGCCTGCTGGA < 41bp 1 0.29143617721202 1 0.0713715851306915 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64032900 chr11:64032897 synonymous SNV . 0 18 hm5C_associated_SNPs_15294 0 0 0 0 1 Ribosome 1 0.500231644577011 1 0.999536710845979 hm5C_site_16948 DeepMRMD:1;iRNA_m5C:0.999536710845979 16949 chr2 157406241 157406241 1 + G A BLCA 157406248 + 157406228 157406268 41 ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC ACCCCCAGACAGGAAAAGTGCGTGTGAGCGGCGCACGGTGC < 41bp 1 0.54557571769621 1 0.352708637714386 experiment 0.90884856460758 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406248 chr2:157406241 synonymous SNV . 0 14 hm5C_associated_SNPs_15295 0 0 0 1 1 Endoplasmic reticulum 1 0.500231643921107 1 0.999536712157785 hm5C_site_16949 DeepMRMD:1;iRNA_m5C:0.999536712157785 16950 chr17 33310224 33310224 1 + G A BLCA 33310210 + 33310190 33310230 41 GTTCTATCATTCCAGGGAAGCCATCTAAGATCACGTGCCAC GTTCTATCATTCCAGGGAAGCCATCTAAGATCACATGCCAC < 41bp 1 0.0384936304423853 1 0.156753957271576 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33310210 chr17:33310224 nonsynonymous SNV 0.997 1 35 hm5C_associated_SNPs_15296 0 0 1 0 0 Cytosol 1 0.500231643921111 1 0.999536712157777 hm5C_site_16950 DeepMRMD:1;iRNA_m5C:0.999536712157777 16951 chr15 57545626 57545626 1 + G C BLCA 57545632 + 57545612 57545652 41 CAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC CAATTCAAACTATGCAGGATCAAGCCTTGTTGCAAGCAGTC < 41bp 1 0.221351898987111 1 0.433252036571503 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57545632 chr15:57545626 nonsynonymous SNV 0.999 3 15 hm5C_associated_SNPs_15297 0 0 1 0 1 Cytosol 1 0.500230479454424 1 0.999539041091151 hm5C_site_16951 DeepMRMD:1;iRNA_m5C:0.999539041091151 16952 chr10 96162370 96162370 1 + G A BLCA 96162358 + 96162338 96162378 41 TTGCCTCCTGGGGCGGCCGCCACCCACCCCCAGATGGTGGG TTGCCTCCTGGGGCGGCCGCCACCCACCCCCAAATGGTGGG < 41bp 1 0.447019118131266 1 0.514283180236816 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D12 ENSG00000108239 UTR5 Human protein_coding chr10:96162358 chr10:96162370 . . 0 33 hm5C_associated_SNPs_15298 0 0 1 0 0 chromatin 1 0.500231643921092 0.971433639526368 0.999536712157815 hm5C_site_16952 DeepMRMD:0.971433639526368;iRNA_m5C:0.999536712157815 16953 chr7 142460325 142460325 1 + G C BLCA 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTCAG < 41bp 1 0.255770849865275 1 0.0919789373874664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460325 synonymous SNV . 0 39 hm5C_associated_SNPs_15299 0 0 0 0 2 Cytosol 1 0.500237154956171 1 0.999525690087657 hm5C_site_16953 DeepMRMD:1;iRNA_m5C:0.999525690087657 16954 chr7 142460325 142460325 1 + G C BLCA 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGCTCAGCCAGGCTA < 41bp 1 0.469161796915438 1 0.210251539945602 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460325 synonymous SNV . 0 31 hm5C_associated_SNPs_15300 0 0 0 0 2 Cytosol 1 0.500231644875325 1 0.999536710249349 hm5C_site_16954 DeepMRMD:1;iRNA_m5C:0.999536710249349 16955 chr7 142460325 142460325 1 + G C BLCA 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGCTCAGCCAGGCTAAG < 41bp 1 0.205765563051912 1 0.128311932086945 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460325 synonymous SNV . 0 29 hm5C_associated_SNPs_15301 0 0 0 0 2 Cytosol 1 0.500231643922245 1 0.999536712155511 hm5C_site_16955 DeepMRMD:1;iRNA_m5C:0.999536712155511 16956 chr7 142460325 142460325 1 + G C BLCA 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGCTCAGCCAGGCTAAGT < 41bp 1 0.462619373495791 1 0.184933990240097 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460325 synonymous SNV . 0 28 hm5C_associated_SNPs_15302 0 0 0 0 2 Cytosol 1 0.500231674461182 1 0.999536651077636 hm5C_site_16956 DeepMRMD:1;iRNA_m5C:0.999536651077636 16957 chr7 142460325 142460325 1 + G C BLCA 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTCAGCCAGGCTAAGTGTGAA < 41bp 1 0.408145400510009 1 0.0794940292835236 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460325 synonymous SNV . 0 23 hm5C_associated_SNPs_15303 0 0 0 0 2 Cytosol 1 0.500231643921004 1 0.999536712157992 hm5C_site_16957 DeepMRMD:1;iRNA_m5C:0.999536712157992 16958 chr7 142460325 142460325 1 + G C BLCA 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTCAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.347930463407886 1 0.451958775520325 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460325 synonymous SNV . 0 18 hm5C_associated_SNPs_15304 0 0 0 0 2 Cytosol 1 0.500231644071853 1 0.999536711856294 hm5C_site_16958 DeepMRMD:1;iRNA_m5C:0.999536711856294 16959 chr7 142460325 142460325 1 + G C BLCA 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTCAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.536939092636228 1 0.720018804073334 experiment 0.926121814727544 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460325 synonymous SNV . 0 17 hm5C_associated_SNPs_15305 0 0 0 0 2 Cytosol 1 0.500232017055214 0.559962391853332 0.999535965889573 hm5C_site_16959 DeepMRMD:0.559962391853332;iRNA_m5C:0.999535965889573 16960 chr7 142460325 142460325 1 + G C BLCA 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTCAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.36092386626342 1 0.124357163906097 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460325 synonymous SNV . 0 13 hm5C_associated_SNPs_15306 0 0 0 0 2 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_16960 DeepMRMD:1;iRNA_m5C:0.999536712157806 16961 chr7 142460325 142460325 1 + G C BLCA 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA CAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0340312570651737 1 0.0923357605934143 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460325 synonymous SNV . 0 1 hm5C_associated_SNPs_15307 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16961 DeepMRMD:1;iRNA_m5C:0.999536712157815 16962 chr4 123145733 123145733 1 + C G BLCA 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCTGAGAGCACACGCTATGTTGTCAGCAGAAGG < 41bp 1 0.410975750319684 1 0.23302885890007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145733 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_15308 0 0 1 0 3 Nucleus 1 0.500231693802954 1 0.999536612394092 hm5C_site_16962 DeepMRMD:1;iRNA_m5C:0.999536612394092 16963 chr17 40817778 40817778 1 + C T BLCA 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATCGGCCTCATCGCCTTGCTCATTCCCACCCCACGGCTC < 41bp 1 0.340453278098816 1 0.0377687215805054 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817778 nonsynonymous SNV 0.996 3 19 hm5C_associated_SNPs_15309 0 0 0 0 2 Cytosol 1 0.500231623239027 1 0.999536753521946 hm5C_site_16963 DeepMRMD:1;iRNA_m5C:0.999536753521946 16964 chr14 102445745 102445745 1 + C G BLCA 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCGCTACGA < 41bp 1 0.205744841996261 1 0.498553574085236 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445745 nonsynonymous SNV 0.212 4 35 hm5C_associated_SNPs_15310 0 0 1 0 2 Cytosol 1 0.500231644004978 1 0.999536711990044 hm5C_site_16964 DeepMRMD:1;iRNA_m5C:0.999536711990044 16965 chr19 14574940 14574940 1 + A G BLCA 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTCGCGGGGTCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.044879683875932 1 0.120672881603241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574940 nonsynonymous SNV 0.000 0 19 hm5C_associated_SNPs_15311 0 0 1 0 2 Ribosome 1 0.500231643691159 1 0.999536712617682 hm5C_site_16965 DeepMRMD:1;iRNA_m5C:0.999536712617682 16966 chr1 109807624 109807624 1 + G C BLCA 109807629 + 109807609 109807649 41 CTTGGGCCATACTGTGAGACCAGGTAAGCAGACCAGGGCAT CTTGGGCCATACTGTCAGACCAGGTAAGCAGACCAGGGCAT < 41bp 1 0.413606298886796 1 0.555056929588318 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109807629 chr1:109807624 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_15312 0 0 1 0 1 Endoplasmic reticulum 1 0.500252804448364 0.889886140823364 0.999494391103272 hm5C_site_16966 DeepMRMD:0.889886140823364;iRNA_m5C:0.999494391103272 16967 chr17 37650822 37650822 1 + A G BLCA 37650826 + 37650806 37650846 41 CTAGACAATGAGAAAGAGGGCTTCCCAATCACAGCCATTCG CTAGACAATGAGAAAGGGGGCTTCCCAATCACAGCCATTCG < 41bp 1 0.0473123891234977 1 0.05026775598526 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37650826 chr17:37650822 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_15313 0 0 1 0 1 Nucleus 1 0.500231674323928 1 0.999536651352143 hm5C_site_16967 DeepMRMD:1;iRNA_m5C:0.999536651352143 16968 chr1 39878175 39878175 1 + G A BLCA 39878188 + 39878168 39878208 41 CAGAGCAGGTCTTCCAGGATCTCCAGAGGAAGTCCCCAGAG CAGAGCAAGTCTTCCAGGATCTCCAGAGGAAGTCCCCAGAG < 41bp 1 0.617610606162573 1 0.874423205852509 experiment 0.764778787674854 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout KIAA0754 ENSG00000255103 CDS Human other chr1:39878188 chr1:39878175 synonymous SNV . 0 8 hm5C_associated_SNPs_15314 0 0 1 0 0 Nucleus 1 0.500231643921092 0.251153588294982 0.999536712157815 hm5C_site_16968 DeepMRMD:0.251153588294982;iRNA_m5C:0.999536712157815 16969 chr19 41306707 41306707 1 + G A BLCA 41306701 + 41306681 41306721 41 CACCTCTACCACTGCCAGCCCTCTTCGGGACGGTTTTGGCG CACCTCTACCACTGCCAGCCCTCTTCAGGACGGTTTTGGCG < 41bp 1 0.120280173991696 1 0.396718859672546 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41306701 chr19:41306707 nonsynonymous SNV 0.989 1 27 hm5C_associated_SNPs_15315 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_16969 DeepMRMD:1;iRNA_m5C:0.999536712157815 16970 chr19 34884827 34884827 1 + C G BLCA 34884810 + 34884790 34884830 41 AGCTCCCACTCATCCTGCTCCTGTTTCAGGACCAGCACTTC AGCTCCCACTCATCCTGCTCCTGTTTCAGGACCAGCAGTTC < 41bp 1 0.127767121104751 1 0.172495394945145 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34884810 chr19:34884827 nonsynonymous SNV 0.997 5 38 hm5C_associated_SNPs_15316 0 0 1 0 1 Ribosome 1 0.500231643482977 1 0.999536713034046 hm5C_site_16970 DeepMRMD:1;iRNA_m5C:0.999536713034046 16971 chr5 179151700 179151700 1 + C T BLCA 179151689 + 179151669 179151709 41 TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATG TGGTATGGAGTATAAGAAAACTGATGCACCTTAACCGGATG < 41bp 1 0.514166852117783 1 0.437645673751831 experiment 0.971666295764434 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151689 chr5:179151700 stopgain 0.955 1 32 hm5C_associated_SNPs_15317 0 0 1 0 2 Nucleus 1 0.500231643921085 1 0.99953671215783 hm5C_site_16971 DeepMRMD:1;iRNA_m5C:0.99953671215783 16972 chr5 179151700 179151700 1 + C T BLCA 179151698 + 179151678 179151718 41 GTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAG GTATAAGAAAACTGATGCACCTTAACCGGATGTGAAGGAAG < 41bp 1 0.259449328453243 1 0.198771446943283 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151698 chr5:179151700 stopgain 0.955 1 23 hm5C_associated_SNPs_15318 0 0 1 0 2 Nucleus 1 0.500231642907097 1 0.999536714185806 hm5C_site_16972 DeepMRMD:1;iRNA_m5C:0.999536714185806 16973 chr5 179151700 179151700 1 + C T BLCA 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGCACCTTAACCGGATGTGAAGGAAGAGGAAG < 41bp 1 0.58844160158208 1 0.562223315238953 experiment 0.823116796835841 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151700 stopgain 0.955 1 17 hm5C_associated_SNPs_15319 0 0 1 0 2 Nucleus 1 0.50023164989336 0.875553369522094 0.999536700213279 hm5C_site_16973 DeepMRMD:0.875553369522094;iRNA_m5C:0.999536700213279 16974 chr19 34949727 34949727 1 + A G BLCA 34949745 + 34949725 34949765 41 GCACTGGATCCTCCCAACCCCAATTGTTATGTATGTGCCAG GCGCTGGATCCTCCCAACCCCAATTGTTATGTATGTGCCAG < 41bp 1 0.333380797883467 1 0.0962076783180237 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34949745 chr19:34949727 synonymous SNV . 0 3 hm5C_associated_SNPs_15320 0 0 1 0 1 Cytosol 1 0.500231643921031 1 0.999536712157938 hm5C_site_16974 DeepMRMD:1;iRNA_m5C:0.999536712157938 16975 chr14 21967260 21967260 1 + G T BLCA 21967278 - 21967258 21967298 41 TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAACCA TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAAACA < 41bp 1 0.0160893679870423 1 0.0651327669620514 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control METTL3 ENSG00000165819 CDS Human protein_coding chr14:21967278 chr14:21967260 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_15321 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16975 DeepMRMD:1;iRNA_m5C:0.999536712157815 16976 chrX 47518321 47518321 1 + C T BLCA 47518340 - 47518320 47518360 41 GGTCTTCCCCCTCCCCACTCCCCAGGAGCCCATCATGGCGA GGTCTTCCCCCTCCCCACTCCCCAGGAGCCCATCATGGCAA < 41bp 1 0.481577286649212 1 0.589560866355896 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UXT ENSG00000126756 CDS Human protein_coding chrX:47518340 chrX:47518321 synonymous SNV . 0 40 hm5C_associated_SNPs_15322 0 0 1 0 2 Ribosome 1 0.500231643921092 0.820878267288208 0.999536712157815 hm5C_site_16976 DeepMRMD:0.820878267288208;iRNA_m5C:0.999536712157815 16977 chr10 76990693 76990693 1 + G A BLCA 76990674 + 76990654 76990694 41 AGGTGTGAAGCTTACACTCTCTGCTCTGGTAGATGGGAAGA AGGTGTGAAGCTTACACTCTCTGCTCTGGTAGATGGGAAAA < 41bp 1 0.482723210274808 1 0.151665836572647 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VDAC2 ENSG00000165637 CDS Human protein_coding chr10:76990674 chr10:76990693 synonymous SNV . 0 40 hm5C_associated_SNPs_15323 0 0 1 0 1 Ribosome 1 0.500231643921099 1 0.999536712157802 hm5C_site_16977 DeepMRMD:1;iRNA_m5C:0.999536712157802 16978 chr10 76990693 76990693 1 + G A BLCA 76990677 + 76990657 76990697 41 TGTGAAGCTTACACTCTCTGCTCTGGTAGATGGGAAGAGCA TGTGAAGCTTACACTCTCTGCTCTGGTAGATGGGAAAAGCA < 41bp 1 0.27595639428363 1 0.143064439296722 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VDAC2 ENSG00000165637 CDS Human protein_coding chr10:76990677 chr10:76990693 synonymous SNV . 0 37 hm5C_associated_SNPs_15324 0 0 1 0 1 Ribosome 1 0.500231490356719 1 0.999537019286561 hm5C_site_16978 DeepMRMD:1;iRNA_m5C:0.999537019286561 16979 chr10 76990693 76990693 1 + G A BLCA 76990679 + 76990659 76990699 41 TGAAGCTTACACTCTCTGCTCTGGTAGATGGGAAGAGCATT TGAAGCTTACACTCTCTGCTCTGGTAGATGGGAAAAGCATT < 41bp 1 0.401981786126161 1 0.478652775287628 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VDAC2 ENSG00000165637 CDS Human protein_coding chr10:76990679 chr10:76990693 synonymous SNV . 0 35 hm5C_associated_SNPs_15325 0 0 1 0 1 Ribosome 1 0.500403080644978 1 0.999193838710045 hm5C_site_16979 DeepMRMD:1;iRNA_m5C:0.999193838710045 16980 chr2 219538626 219538626 1 + G A BLCA 219538635 + 219538615 219538655 41 CAGACTATGCTGAGGGAGAGCTCTTTCAGATCCTAGAAGAT CAGACTATGCTAAGGGAGAGCTCTTTCAGATCCTAGAAGAT < 41bp 1 0.0770199544347067 1 0.110742151737213 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STK36 ENSG00000163482 CDS Human protein_coding chr2:219538635 chr2:219538626 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_15326 0 0 0 0 2 chromatin 1 0.500231643921265 1 0.99953671215747 hm5C_site_16980 DeepMRMD:1;iRNA_m5C:0.99953671215747 16981 chr5 140573673 140573673 1 + C T BLCA 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTTAGGTC < 41bp 1 0.170500946337562 1 0.107105642557144 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573673 synonymous SNV . 0 36 hm5C_associated_SNPs_15327 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16981 DeepMRMD:1;iRNA_m5C:0.999536712157815 16982 chr3 134851706 134851706 1 + C T BLCA 134851688 + 134851668 134851708 41 CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCC CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTTCC < 41bp 1 0.0934545869146298 1 0.414998173713684 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851688 chr3:134851706 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_15328 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16982 DeepMRMD:1;iRNA_m5C:0.999536712157815 16983 chrX 10155598 10155598 1 + G T BLCA 10155590 + 10155570 10155610 41 AAGGAGTCCATATGGGAGTTCATCAAGAGCCTGCTGGATGC AAGGAGTCCATATGGGAGTTCATCAAGATCCTGCTGGATGC < 41bp 1 0.31724477629929 1 0.140746146440506 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10155590 chrX:10155598 nonsynonymous SNV 0.658 3 29 hm5C_associated_SNPs_15329 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_16983 DeepMRMD:1;iRNA_m5C:0.999536712157815 16984 chr11 61719346 61719346 1 + G A BLCA 61719365 + 61719345 61719385 41 TGCTGGCGGGGCAGCATCTACAAGCTGCTATATGGCGAGTT TACTGGCGGGGCAGCATCTACAAGCTGCTATATGGCGAGTT < 41bp 1 0.51321944132877 1 0.519916415214539 experiment 0.973561117342459 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61719365 chr11:61719346 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_15330 0 0 0 0 1 chromatin 1 0.500231643921089 0.960167169570922 0.999536712157822 hm5C_site_16984 DeepMRMD:0.960167169570922;iRNA_m5C:0.999536712157822 16985 chr12 132547135 132547135 1 + G A BLCA 132547130 + 132547110 132547150 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG AGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAG < 41bp 1 0.463706076781983 1 0.763225197792053 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132547130 chr12:132547135 synonymous SNV . 0 26 hm5C_associated_SNPs_15331 0 0 0 0 0 Cytosol 1 0.500231716855767 0.473549604415894 0.999536566288466 hm5C_site_16985 DeepMRMD:0.473549604415894;iRNA_m5C:0.999536566288466 16986 chr1 156255359 156255359 1 + C T BLCA 156255378 + 156255358 156255398 41 CCGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT CTGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT < 41bp 1 0.351550613289564 1 0.105183690786362 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255378 chr1:156255359 synonymous SNV . 0 2 hm5C_associated_SNPs_15332 0 0 0 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_16986 DeepMRMD:1;iRNA_m5C:0.999536712157815 16987 chr2 27448053 27448053 1 + G A BLCA 27448037 + 27448017 27448057 41 TTGAGCTGACCGAGGATCGACGGGCCTTTGCTGCCAGAATG TTGAGCTGACCGAGGATCGACGGGCCTTTGCTGCCAAAATG < 41bp 1 0.458128894025122 1 0.625492811203003 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448037 chr2:27448053 nonsynonymous SNV 0.766 2 37 hm5C_associated_SNPs_15333 0 0 1 0 1 Exosome 1 0.500231643809516 0.749014377593994 0.999536712380967 hm5C_site_16987 DeepMRMD:0.749014377593994;iRNA_m5C:0.999536712380967 16988 chr2 27448053 27448053 1 + G A BLCA 27448041 + 27448021 27448061 41 GCTGACCGAGGATCGACGGGCCTTTGCTGCCAGAATGGCAG GCTGACCGAGGATCGACGGGCCTTTGCTGCCAAAATGGCAG < 41bp 1 0.0136110475263984 1 0.0868426263332367 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448041 chr2:27448053 nonsynonymous SNV 0.766 2 33 hm5C_associated_SNPs_15334 0 0 1 0 1 Exosome 1 0.500231630303759 1 0.999536739392483 hm5C_site_16988 DeepMRMD:1;iRNA_m5C:0.999536739392483 16989 chr2 27448053 27448053 1 + G A BLCA 27448047 + 27448027 27448067 41 CGAGGATCGACGGGCCTTTGCTGCCAGAATGGCAGAGATCG CGAGGATCGACGGGCCTTTGCTGCCAAAATGGCAGAGATCG < 41bp 1 0.331147798015938 1 0.0584559440612793 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448047 chr2:27448053 nonsynonymous SNV 0.766 2 27 hm5C_associated_SNPs_15335 0 0 1 0 1 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_16989 DeepMRMD:1;iRNA_m5C:0.999536712157815 16990 chr14 103805628 103805628 1 + G C BLCA 103805638 + 103805618 103805658 41 TTAATGAGAAGATTAGAGAACAGATTAAGAAATACAGGCGC TTAATGAGAACATTAGAGAACAGATTAAGAAATACAGGCGC < 41bp 1 0.386775913354449 1 0.178159236907959 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805638 chr14:103805628 nonsynonymous SNV 0.980 2 11 hm5C_associated_SNPs_15336 0 0 1 0 1 Cytosol 1 0.500253217062394 1 0.999493565875212 hm5C_site_16990 DeepMRMD:1;iRNA_m5C:0.999493565875212 16991 chr16 15788066 15788066 1 + C T BLCA 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCTG < 41bp 1 0.200146665143547 1 0.0574577152729034 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788066 nonsynonymous SNV 0.729 3 40 hm5C_associated_SNPs_15337 0 0 1 0 2 chromatin 1 0.50023165047513 1 0.999536699049739 hm5C_site_16991 DeepMRMD:1;iRNA_m5C:0.999536699049739 16992 chr11 67052379 67052379 1 + C G BLCA 67052374 + 67052354 67052394 41 ACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAG ACATGTCCAAGATGGGCAACCCCTTGCTGACCCAGTGGCAG < 41bp 1 0.085854795914177 1 0.119154185056686 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052374 chr11:67052379 nonsynonymous SNV 0.994 2 26 hm5C_associated_SNPs_15339 0 0 1 0 2 chromatin 1 0.500231643963222 1 0.999536712073556 hm5C_site_16992 DeepMRMD:1;iRNA_m5C:0.999536712073556 16993 chr11 67052379 67052379 1 + C G BLCA 67052376 + 67052356 67052396 41 ATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCG ATGTCCAAGATGGGCAACCCCTTGCTGACCCAGTGGCAGCG < 41bp 1 0.293701951865063 1 0.173966079950333 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052376 chr11:67052379 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_15340 0 0 1 0 2 chromatin 1 0.500231643923686 1 0.999536712152628 hm5C_site_16993 DeepMRMD:1;iRNA_m5C:0.999536712152628 16994 chr5 17275374 17275374 1 + G A BLCA 17275370 + 17275350 17275390 41 AAGAAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAA AAGAAGGGCTACAATGTGAACGACAAGAAAGCCAAGGAGAA < 41bp 1 0.686987396229925 1 0.171583443880081 experiment 0.626025207540151 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275370 chr5:17275374 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_15341 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_16994 DeepMRMD:1;iRNA_m5C:0.999536712157815 16995 chr5 17275374 17275374 1 + G A BLCA 17275373 + 17275353 17275393 41 AAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAAAGA AAGGGCTACAATGTGAACGACAAGAAAGCCAAGGAGAAAGA < 41bp 1 0.680755293184001 1 0.164179027080536 experiment 0.638489413631999 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275373 chr5:17275374 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_15342 0 0 1 0 1 Nucleus 1 0.50023164391882 1 0.999536712162359 hm5C_site_16995 DeepMRMD:1;iRNA_m5C:0.999536712162359 16996 chr5 17275374 17275374 1 + G A BLCA 17275381 + 17275361 17275401 41 CAATGTGAACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG CAATGTGAACGACAAGAAAGCCAAGGAGAAAGACAAGAAGG < 41bp 1 0.33037195593213 1 0.413287550210953 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275381 chr5:17275374 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_15343 0 0 1 0 1 Nucleus 1 0.500231644060069 1 0.999536711879861 hm5C_site_16996 DeepMRMD:1;iRNA_m5C:0.999536711879861 16997 chr19 59057194 59057194 1 + C T BLCA 59057191 + 59057171 59057211 41 ACTGTGTGGAGTGCTCGGAGCCTCTGTGTGAGACCTGTGTA ACTGTGTGGAGTGCTCGGAGCCTTTGTGTGAGACCTGTGTA < 41bp 1 0.0443475780947605 1 0.0429597198963165 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057191 chr19:59057194 synonymous SNV . 0 24 hm5C_associated_SNPs_15344 0 0 1 0 2 Cytosol 1 0.500231643921125 1 0.99953671215775 hm5C_site_16997 DeepMRMD:1;iRNA_m5C:0.99953671215775 16998 chr19 59057194 59057194 1 + C T BLCA 59057205 + 59057185 59057225 41 TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCAGCG TCGGAGCCTTTGTGTGAGACCTGTGTAGAGGCGCACCAGCG < 41bp 1 0.419839962992058 1 0.109072506427765 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057205 chr19:59057194 synonymous SNV . 0 10 hm5C_associated_SNPs_15345 0 0 1 0 2 Cytosol 1 0.500231652067283 1 0.999536695865433 hm5C_site_16998 DeepMRMD:1;iRNA_m5C:0.999536695865433 16999 chr19 10812162 10812162 1 + C T BLCA 10812147 + 10812127 10812167 41 GACAGTCAAGATGGCGGGAGCAGCTACCCAGGCTTCCCTGG GACAGTCAAGATGGCGGGAGCAGCTACCCAGGCTTTCCTGG < 41bp 1 0.508474368584724 1 0.479104280471802 experiment 0.983051262830552 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812147 chr19:10812162 nonsynonymous SNV 0.006 1 36 hm5C_associated_SNPs_15346 0 0 1 0 0 Ribosome 1 0.500231643920929 1 0.999536712158142 hm5C_site_16999 DeepMRMD:1;iRNA_m5C:0.999536712158142 17000 chr16 53504333 53504333 1 + G C BLCA 53504331 + 53504311 53504351 41 TGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGG TGGAGGGATAACATTCTTCCCTCTCCAAGTCAATGTTGGGG < 41bp 1 0.0992368116280943 1 0.236796528100967 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBL2 ENSG00000103479 CDS Human protein_coding chr16:53504331 chr16:53504333 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_15347 0 0 1 0 1 Ribosome 1 0.500231643921068 1 0.999536712157863 hm5C_site_17000 DeepMRMD:1;iRNA_m5C:0.999536712157863 17001 chr10 126505169 126505169 1 + C G BLCA 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACCATCAGCCTTGTTGAAAACTTTTT < 41bp 1 0.25590210512678 1 0.118677794933319 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505169 stopgain 1.000 0 31 hm5C_associated_SNPs_15348 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_17001 DeepMRMD:1;iRNA_m5C:0.999536712157815 17002 chr4 123192861 123192861 1 + G A BLCA 123192859 + 123192839 123192879 41 AGGAATATTGGAAAAGTCTTCAGAAACATTTGGACCAGCAG AGGAATATTGGAAAAGTCTTCAAAAACATTTGGACCAGCAG < 41bp 1 0.183590637730513 1 0.648221492767334 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123192859 chr4:123192861 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_15349 0 0 1 0 1 Nucleus 1 0.500231646061365 0.703557014465332 0.99953670787727 hm5C_site_17002 DeepMRMD:0.703557014465332;iRNA_m5C:0.99953670787727 17003 chr14 90867659 90867659 1 + A G BLCA 90867648 + 90867628 90867668 41 TGATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTG TGATAAAGATGGCGATGGCACCATCACAACAGAGGAACTTG < 41bp 1 0.0729257129826134 1 0.0672257840633392 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867648 chr14:90867659 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_15350 0 0 1 0 2 Ribosome 1 0.500231643908403 1 0.999536712183194 hm5C_site_17003 DeepMRMD:1;iRNA_m5C:0.999536712183194 17004 chr14 90867659 90867659 1 + A G BLCA 90867649 + 90867629 90867669 41 GATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTGG GATAAAGATGGCGATGGCACCATCACAACAGAGGAACTTGG < 41bp 1 0.463223884973596 1 0.319206357002258 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867649 chr14:90867659 nonsynonymous SNV 0.998 1 31 hm5C_associated_SNPs_15351 0 0 1 0 2 Ribosome 1 0.500231644109839 1 0.999536711780322 hm5C_site_17004 DeepMRMD:1;iRNA_m5C:0.999536711780322 17005 chr11 110035800 110035800 1 + C A BLCA 110035817 + 110035797 110035837 41 CAACACATGCACCCTCACAGCCGCCTTAATCCTCAACCGTT CAAAACATGCACCCTCACAGCCGCCTTAATCCTCAACCGTT < 41bp 1 0.118020616134692 1 0.0864737331867218 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035817 chr11:110035800 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_15352 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921181 1 0.999536712157638 hm5C_site_17005 DeepMRMD:1;iRNA_m5C:0.999536712157638 17006 chr11 93530718 93530718 1 + G C BLCA 93530714 + 93530694 93530734 41 TTGTTAGTTTCATAAACAGACCTTGAGTTCCATCATGATGC TTGTTAGTTTCATAAACAGACCTTCAGTTCCATCATGATGC < 41bp 1 0.00922450799860568 1 0.0126011967658997 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED17 ENSG00000042429 CDS Human protein_coding chr11:93530714 chr11:93530718 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_15353 0 0 0 0 1 Cytosol 1 0.500231645134807 1 0.999536709730385 hm5C_site_17006 DeepMRMD:1;iRNA_m5C:0.999536709730385 17007 chr7 73636008 73636008 1 + C T BLCA 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGCGGTTCTTGAAGCCCCCAGAA < 41bp 1 0.182828114371594 1 0.254678398370743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636008 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_15354 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17007 DeepMRMD:1;iRNA_m5C:0.999536712157815 17008 chr7 73636008 73636008 1 + C T BLCA 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAG < 41bp 1 0.146733067858485 1 0.138333201408386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636008 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_15355 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17008 DeepMRMD:1;iRNA_m5C:0.999536712157815 17009 chr7 73636008 73636008 1 + C T BLCA 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAGG < 41bp 1 0.448317508330722 1 0.175954401493073 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636008 nonsynonymous SNV 0.001 0 15 hm5C_associated_SNPs_15356 0 0 1 0 2 chromatin 1 0.500444512956208 1 0.999110974087585 hm5C_site_17009 DeepMRMD:1;iRNA_m5C:0.999110974087585 17010 chr7 73636008 73636008 1 + C T BLCA 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAGGA < 41bp 1 0.223349377208368 1 0.308219522237778 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636008 nonsynonymous SNV 0.001 0 14 hm5C_associated_SNPs_15357 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17010 DeepMRMD:1;iRNA_m5C:0.999536712157815 17011 chr7 73636008 73636008 1 + C T BLCA 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAGGAC < 41bp 1 0.483689266611356 1 0.32285749912262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636008 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_15358 0 0 1 0 2 chromatin 1 0.50023164478032 1 0.999536710439361 hm5C_site_17011 DeepMRMD:1;iRNA_m5C:0.999536710439361 17012 chr7 73636008 73636008 1 + C T BLCA 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGCGGTTCTTGAAGCCCCCAGAAGGTGAGGCGAAGGACA < 41bp 1 0.607811044026918 1 0.832887291908264 experiment 0.784377911946163 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636008 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_15359 0 0 1 0 2 chromatin 1 0.50023164392109 0.334225416183472 0.999536712157821 hm5C_site_17012 DeepMRMD:0.334225416183472;iRNA_m5C:0.999536712157821 17013 chr3 52245381 52245381 1 + C T BLCA 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTT < 41bp 1 0.275512905262052 1 0.368093281984329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245381 synonymous SNV . 0 41 hm5C_associated_SNPs_15360 0 0 1 0 1 Cytosol 1 0.500231643927794 1 0.999536712144412 hm5C_site_17013 DeepMRMD:1;iRNA_m5C:0.999536712144412 17014 chr5 33459922 33459922 1 + G C BLCA 33459929 + 33459909 33459949 41 CCTTTGAGGTGGAGAAGGAGCTGTTTGCCCTGAAACCCATG CCTTTGAGGTGGACAAGGAGCTGTTTGCCCTGAAACCCATG < 41bp 1 0.455958880710671 1 0.09645876288414 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33459929 chr5:33459922 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_15361 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17014 DeepMRMD:1;iRNA_m5C:0.999536712157815 17015 chr3 66430871 66430871 1 + G T BLCA 66430873 - 66430853 66430893 41 GCAAGGTTGTATCACCCGGACTCCACAGAGCTACAGCCTGC GCAAGGTTGTATCACCCGGACTACACAGAGCTACAGCCTGC < 41bp 1 0.470777204077535 1 0.0648505389690399 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430873 chr3:66430871 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_15362 0 0 1 0 1 Ribosome 1 0.500231664668364 1 0.999536670663271 hm5C_site_17015 DeepMRMD:1;iRNA_m5C:0.999536670663271 17016 chr17 77043890 77043890 1 + T C BLCA 77043900 + 77043880 77043920 41 TACTGCTACGTGCCCGGCCTCTACTTCTTCAGCCTCAACGT TACTGCTACGCGCCCGGCCTCTACTTCTTCAGCCTCAACGT < 41bp 1 0.301298533207337 1 0.0555092990398407 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77043900 chr17:77043890 nonsynonymous SNV 0.997 0 11 hm5C_associated_SNPs_15363 0 0 0 0 0 exosome 1 0.500231332677292 1 0.999537334645415 hm5C_site_17016 DeepMRMD:1;iRNA_m5C:0.999537334645415 17017 chr8 145138146 145138146 1 + C T BLCA 145138162 + 145138142 145138182 41 TTTGCGGGCGGAGACCGTGCCCGGGCTTTTGCCCGGGACTT TTTGTGGGCGGAGACCGTGCCCGGGCTTTTGCCCGGGACTT < 41bp 1 0.674822032744253 1 0.555763959884644 experiment 0.650355934511495 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145138162 chr8:145138146 nonsynonymous SNV 0.198 0 5 hm5C_associated_SNPs_15364 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164391021 0.888472080230712 0.99953671217958 hm5C_site_17017 DeepMRMD:0.888472080230712;iRNA_m5C:0.99953671217958 17018 chr14 102476256 102476256 1 + G C BLCA 102476275 + 102476255 102476295 41 TGAACCCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC TCAACCCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC < 41bp 1 0.0436781259843268 1 0.345095813274384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102476275 chr14:102476256 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_15365 0 0 1 0 1 Cytosol 1 0.50022953613932 1 0.99954092772136 hm5C_site_17018 DeepMRMD:1;iRNA_m5C:0.99954092772136 17019 chr19 7918186 7918186 1 + G C BLCA 7918189 + 7918169 7918209 41 GAGTACGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGAT GAGTACGCAGCCATGAACAGCAAGGAGATGGAGGAGCAGAT < 41bp 1 0.306357993588591 1 0.458130210638046 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EVI5L ENSG00000142459 CDS Human protein_coding chr19:7918189 chr19:7918186 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_15366 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17019 DeepMRMD:1;iRNA_m5C:0.999536712157815 17020 chr1 39910468 39910468 1 + G T BLCA 39910457 + 39910437 39910477 41 AGACAGAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAT AGACAGAACAGAGTGTAGCACTTTTGGAGCATAAGTGGCAT < 41bp 1 0.0673769615999221 1 0.0800431370735168 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910457 chr1:39910468 nonsynonymous SNV 0.998 3 32 hm5C_associated_SNPs_15367 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920521 1 0.999536712158958 hm5C_site_17020 DeepMRMD:1;iRNA_m5C:0.999536712158958 17021 chr1 39910468 39910468 1 + G T BLCA 39910466 + 39910446 39910486 41 AGAGTGTAGCACTTTTGGAGCAGAAGTGGCATGTGGTCAGC AGAGTGTAGCACTTTTGGAGCATAAGTGGCATGTGGTCAGC < 41bp 1 0.139325873240438 1 0.0662060379981995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910466 chr1:39910468 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_15368 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164960088 1 0.99953670079824 hm5C_site_17021 DeepMRMD:1;iRNA_m5C:0.99953670079824 17022 chr1 39910468 39910468 1 + G T BLCA 39910475 + 39910455 39910495 41 CACTTTTGGAGCAGAAGTGGCATGTGGTCAGCAGTAAGATG CACTTTTGGAGCATAAGTGGCATGTGGTCAGCAGTAAGATG < 41bp 1 0.0865121493382404 1 0.0697435438632965 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910475 chr1:39910468 nonsynonymous SNV 0.998 3 14 hm5C_associated_SNPs_15369 0 0 1 0 1 Endoplasmic reticulum 1 0.500231564306776 1 0.999536871386448 hm5C_site_17022 DeepMRMD:1;iRNA_m5C:0.999536871386448 17023 chr1 39910468 39910468 1 + G T BLCA 39910486 + 39910466 39910506 41 CAGAAGTGGCATGTGGTCAGCAGTAAGATGGAAGAAAGAAA CATAAGTGGCATGTGGTCAGCAGTAAGATGGAAGAAAGAAA < 41bp 1 0.116331518230915 1 0.452091962099075 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910486 chr1:39910468 nonsynonymous SNV 0.998 3 3 hm5C_associated_SNPs_15370 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643922281 1 0.999536712155437 hm5C_site_17023 DeepMRMD:1;iRNA_m5C:0.999536712155437 17024 chr14 60591527 60591527 1 + C G BLCA 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTGTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG < 41bp 1 0.218788434723215 1 0.274068534374237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591527 nonsynonymous SNV 0.591 0 5 hm5C_associated_SNPs_15371 0 0 1 2 0 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157812 hm5C_site_17024 DeepMRMD:1;iRNA_m5C:0.999536712157812 17025 chr3 158519924 158519924 1 + C T BLCA 158519940 + 158519920 158519960 41 CTCTCCGTCTCCTGCGGGCGCAATGGAGGAGGAGGATGAGG CTCTTCGTCTCCTGCGGGCGCAATGGAGGAGGAGGATGAGG < 41bp 1 0.450002410313763 1 0.456532269716263 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158519940 chr3:158519924 nonsynonymous SNV 0.001 0 5 hm5C_associated_SNPs_15372 0 0 1 0 0 Ribosome 1 0.500231643920997 1 0.999536712158007 hm5C_site_17025 DeepMRMD:1;iRNA_m5C:0.999536712158007 17026 chr4 1932436 1932436 1 + G A BLCA 1932419 + 1932399 1932439 41 TGCTCAGGTCACAGTGGAGTCTGCTGAGTGAGAAGCAGAGA TGCTCAGGTCACAGTGGAGTCTGCTGAGTGAGAAGCAAAGA < 41bp 1 0.44627935698838 1 0.201279312372208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NSD2 ENSG00000109685 CDS Human protein_coding chr4:1932419 chr4:1932436 synonymous SNV . 0 38 hm5C_associated_SNPs_15373 0 0 1 0 2 Nucleus 1 0.500231643939959 1 0.999536712120081 hm5C_site_17026 DeepMRMD:1;iRNA_m5C:0.999536712120081 17027 chrX 73044223 73044223 1 + T A BLCA 73044221 - 73044201 73044241 41 AAGGCACCATATAAATGTAACTGTTGATTTTCTCACTTGGT AAGGCACCATATAAATGTTACTGTTGATTTTCTCACTTGGT < 41bp 1 0.0269081556668029 1 0.0689023435115814 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044221 chrX:73044223 . . 0 19 hm5C_associated_SNPs_15374 0 0 1 1 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_17027 DeepMRMD:1;iRNA_m5C:0.999536712157815 17028 chr17 55083551 55083551 1 + G A BLCA 55083541 + 55083521 55083561 41 TGTTTTTTTCTAGGTTCCTTCTGACCAAGGGGACATGGCTC TGTTTTTTTCTAGGTTCCTTCTGACCAAGGAGACATGGCTC < 41bp 1 0.313307416920984 1 0.721314072608948 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55083541 chr17:55083551 synonymous SNV . 0 31 hm5C_associated_SNPs_15375 0 0 1 0 1 Ribosome 1 0.500231643918393 0.557371854782104 0.999536712163213 hm5C_site_17028 DeepMRMD:0.557371854782104;iRNA_m5C:0.999536712163213 17029 chr7 156746908 156746908 1 + C T BLCA 156746911 + 156746891 156746931 41 GCTCTCATGGGTGCCTGCGTCACTGCCTCGGCCATGCCCAG GCTCTCATGGGTGCCTGTGTCACTGCCTCGGCCATGCCCAG < 41bp 1 0.673559924704545 1 0.449502021074295 experiment 0.65288015059091 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOM1 ENSG00000146909 CDS Human protein_coding chr7:156746911 chr7:156746908 synonymous SNV . 0 18 hm5C_associated_SNPs_15376 0 0 1 0 1 Nucleus 1 0.500231643889936 1 0.999536712220127 hm5C_site_17029 DeepMRMD:1;iRNA_m5C:0.999536712220127 17030 chrX 106046148 106046148 1 + C T BLCA 106046129 + 106046109 106046149 41 TTCTGAAAAATGCGCTGAAGCTGTGGCTGATGGAAAGGTCC TTCTGAAAAATGCGCTGAAGCTGTGGCTGATGGAAAGGTTC < 41bp 1 0.566550913808479 1 0.20409694314003 experiment 0.866898172383042 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106046129 chrX:106046148 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_15377 0 0 0 0 1 exosome 1 0.500231643904279 1 0.999536712191442 hm5C_site_17030 DeepMRMD:1;iRNA_m5C:0.999536712191442 17031 chr22 29533341 29533341 1 + G A BLCA 29533346 + 29533326 29533366 41 ACAGCTCTCGTGGGCGCCTGCGGTGGGAACTACTCAGCCAT ACAGCTCTCGTGGGCACCTGCGGTGGGAACTACTCAGCCAT < 41bp 1 0.507760788596319 1 0.735467553138733 experiment 0.984478422807361 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533346 chr22:29533341 nonsynonymous SNV 0.910 4 16 hm5C_associated_SNPs_15379 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921223 0.529064893722534 0.999536712157554 hm5C_site_17031 DeepMRMD:0.529064893722534;iRNA_m5C:0.999536712157554 17032 chr1 86047753 86047753 1 + C T BLCA 86047751 + 86047731 86047771 41 TGTGTCCCCAAGAACTATCTCTCCCCAACTTGGGCTGTCCC TGTGTCCCCAAGAACTATCTCTTCCCAACTTGGGCTGTCCC < 41bp 1 0.156487996936276 1 0.0560724437236786 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86047751 chr1:86047753 synonymous SNV . 0 23 hm5C_associated_SNPs_15380 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643922446 1 0.999536712155108 hm5C_site_17032 DeepMRMD:1;iRNA_m5C:0.999536712155108 17033 chr10 12148393 12148393 1 + G C BLCA 12148373 + 12148353 12148393 41 TTCAATGGTGCCCAGATCATCTTTGACACATTCATCTCTGG TTCAATGGTGCCCAGATCATCTTTGACACATTCATCTCTGC < 41bp 1 0.168407985528842 1 0.155503302812576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148373 chr10:12148393 nonsynonymous SNV 0.998 3 41 hm5C_associated_SNPs_15381 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643916359 1 0.999536712167283 hm5C_site_17033 DeepMRMD:1;iRNA_m5C:0.999536712167283 17034 chr11 129991605 129991605 1 + C G BLCA 129991624 + 129991604 129991644 41 TCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAG TGAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAG < 41bp 1 0.258820372315818 1 0.147396355867386 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout APLP2 ENSG00000084234 CDS Human protein_coding chr11:129991624 chr11:129991605 nonsynonymous SNV 0.918 1 2 hm5C_associated_SNPs_15382 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17034 DeepMRMD:1;iRNA_m5C:0.999536712157815 17035 chrX 73047089 73047089 1 + C A BLCA 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTTATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA < 41bp 1 0.248783530540416 1 0.127440392971039 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047089 . . 0 8 hm5C_associated_SNPs_15383 0 0 1 1 0 unknown 1 0.500231647860207 1 0.999536704279586 hm5C_site_17035 DeepMRMD:1;iRNA_m5C:0.999536704279586 17036 chrX 73047089 73047089 1 + C A BLCA 73047096 - 73047076 73047116 41 GGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGAAC GGCAGAGGGGCTTCCTAACCCCTGCCTTATAGGTGCAGAAC < 41bp 1 0.102125351240533 1 0.340937316417694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047096 chrX:73047089 . . 0 28 hm5C_associated_SNPs_15384 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17036 DeepMRMD:1;iRNA_m5C:0.999536712157815 17037 chrX 73047089 73047089 1 + C A BLCA 73047098 - 73047078 73047118 41 GTGGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGA GTGGCAGAGGGGCTTCCTAACCCCTGCCTTATAGGTGCAGA < 41bp 1 0.175727238383216 1 0.38289549946785 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047098 chrX:73047089 . . 0 30 hm5C_associated_SNPs_15385 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17037 DeepMRMD:1;iRNA_m5C:0.999536712157815 17038 chrX 73047089 73047089 1 + C A BLCA 73047102 - 73047082 73047122 41 ATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTG ATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTTATAGGTG < 41bp 1 0.0993828702235452 1 0.149033308029175 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047102 chrX:73047089 . . 0 34 hm5C_associated_SNPs_15386 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17038 DeepMRMD:1;iRNA_m5C:0.999536712157815 17039 chrX 73047089 73047089 1 + C A BLCA 73047103 - 73047083 73047123 41 CATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGT CATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTTATAGGT < 41bp 1 0.0561458047935309 1 0.0454576015472412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047103 chrX:73047089 . . 0 35 hm5C_associated_SNPs_15387 0 0 1 1 0 unknown 1 0.500231814133701 1 0.999536371732598 hm5C_site_17039 DeepMRMD:1;iRNA_m5C:0.999536371732598 17040 chrX 73047089 73047089 1 + C A BLCA 73047106 - 73047086 73047126 41 TGTCATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTGATA TGTCATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTTATA < 41bp 1 0.0746051224982496 1 0.15254008769989 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047106 chrX:73047089 . . 0 38 hm5C_associated_SNPs_15388 0 0 1 1 0 unknown 1 0.500231643921091 1 0.999536712157817 hm5C_site_17040 DeepMRMD:1;iRNA_m5C:0.999536712157817 17041 chr2 220496757 220496757 1 + C T BLCA 220496744 + 220496724 220496764 41 ACACTTAGTGAAAAAGCCCTCCCGGACGCAGGGCGGGAGGG ACACTTAGTGAAAAAGCCCTCCCGGACGCAGGGTGGGAGGG < 41bp 1 0.385295885935397 1 0.47748014330864 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220496744 chr2:220496757 synonymous SNV . 0 34 hm5C_associated_SNPs_15389 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17041 DeepMRMD:1;iRNA_m5C:0.999536712157815 17042 chr3 53220312 53220312 1 + G A BLCA 53220318 + 53220298 53220338 41 TGACACTTGCCGCAGAGAATCCCTTTCTCACCCACCTCATC TGACACTTGCCGCAAAGAATCCCTTTCTCACCCACCTCATC < 41bp 1 0.115294051752952 1 0.035496711730957 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCD ENSG00000163932 CDS Human protein_coding chr3:53220318 chr3:53220312 nonsynonymous SNV 0.964 1 15 hm5C_associated_SNPs_15390 0 0 0 0 1 Cytosol 1 0.50023176224852 1 0.999536475502959 hm5C_site_17042 DeepMRMD:1;iRNA_m5C:0.999536475502959 17043 chr15 41195241 41195241 1 + A G BLCA 41195230 + 41195210 41195250 41 TTTTACCTCTTCCTCTGTGGCCATATGTTCCATGCTGACTG TTTTACCTCTTCCTCTGTGGCCATATGTTCCGTGCTGACTG < 41bp 1 0.184456478090965 1 0.0915184915065765 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41195230 chr15:41195241 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_15391 0 0 1 0 0 chromatin 1 0.501564906717172 1 0.996870186565656 hm5C_site_17043 DeepMRMD:1;iRNA_m5C:0.996870186565656 17044 chr3 52325025 52325025 1 + G A BLCA 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGAAGGACAACCTCCCGGACCGCGATGCGCTGCGGG < 41bp 1 0.526826485866099 1 0.761197865009308 experiment 0.946347028267801 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325025 nonsynonymous SNV 0.712 1 8 hm5C_associated_SNPs_15392 0 0 1 0 1 chromatin 1 0.500231644231914 0.477604269981384 0.999536711536173 hm5C_site_17044 DeepMRMD:0.477604269981384;iRNA_m5C:0.999536711536173 17045 chr6 7580988 7580988 1 + C G BLCA 7580985 + 7580965 7581005 41 GCAGAAAGCAAACAGTAGTGCGACGGAGACAATAAACAAAC GCAGAAAGCAAACAGTAGTGCGAGGGAGACAATAAACAAAC < 41bp 1 0.667840251379857 1 0.81274688243866 experiment 0.664319497240285 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7580985 chr6:7580988 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_15393 0 0 1 0 0 Nucleus 1 0.500232047451046 0.37450623512268 0.999535905097908 hm5C_site_17045 DeepMRMD:0.37450623512268;iRNA_m5C:0.999535905097908 17046 chr17 73738710 73738710 1 + G A BLCA 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGACATACGGGTGCCCCTCTTTATCCGGCCTGAG < 41bp 1 0.0925119360766879 1 0.0175837278366089 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738710 nonsynonymous SNV 0.906 4 12 hm5C_associated_SNPs_15395 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17046 DeepMRMD:1;iRNA_m5C:0.999536712157815 17047 chr16 82891976 82891976 1 + C T BLCA 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGTGCTGCTGTTAACATCTGCAGAAGATTTGGACTGCA < 41bp 1 0.574817684772438 1 0.790629267692566 experiment 0.850364630455125 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891976 synonymous SNV . 0 14 hm5C_associated_SNPs_15396 0 0 0 0 1 Nucleus 1 0.50023164791447 0.418741464614868 0.99953670417106 hm5C_site_17047 DeepMRMD:0.418741464614868;iRNA_m5C:0.99953670417106 17048 chr16 28834730 28834730 1 + G T BLCA 28834747 + 28834727 28834767 41 CGGGCCTCCAGCGGCCGCCTCCCCCTGCCTGGGGCCTGTGG CGGTCCTCCAGCGGCCGCCTCCCCCTGCCTGGGGCCTGTGG < 41bp 1 0.330460292241232 1 0.0885563790798187 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28834747 chr16:28834730 synonymous SNV . 0 4 hm5C_associated_SNPs_15397 0 0 1 0 0 Cytosol 1 0.500231643921064 1 0.999536712157872 hm5C_site_17048 DeepMRMD:1;iRNA_m5C:0.999536712157872 17049 chr12 124158196 124158196 1 + G T BLCA 124158178 + 124158158 124158198 41 TCAGAAGGTGTTGGAAGTGACAGTGAGGTGGAAGAGAGGTC TCAGAAGGTGTTGGAAGTGACAGTGAGGTGGAAGAGAGTTC < 41bp 1 0.381411457429514 1 0.275694608688354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124158178 chr12:124158196 nonsynonymous SNV 0.020 2 39 hm5C_associated_SNPs_15398 0 0 1 0 2 Nucleus 1 0.500231643815931 1 0.999536712368137 hm5C_site_17049 DeepMRMD:1;iRNA_m5C:0.999536712368137 17050 chr19 40882622 40882622 1 + G C BLCA 40882624 + 40882604 40882644 41 TCGGAGCCATCCATGCGGGCCTTCCTGCTCTCTCTGGCTGC TCGGAGCCATCCATGCGGCCCTTCCTGCTCTCTCTGGCTGC < 41bp 1 0.111822619586133 1 0.0169579982757568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40882624 chr19:40882622 nonsynonymous SNV 0.886 0 19 hm5C_associated_SNPs_15399 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17050 DeepMRMD:1;iRNA_m5C:0.999536712157815 17051 chr7 21631013 21631013 1 + C T BLCA 21631019 + 21630999 21631039 41 AGCACAGAGTTGAGCGCACACAGAAAAACGTGAAGGTGATC AGCACAGAGTTGAGTGCACACAGAAAAACGTGAAGGTGATC < 41bp 1 0.52726784254876 1 0.365388721227646 experiment 0.94546431490248 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21631019 chr7:21631013 nonsynonymous SNV 0.002 2 15 hm5C_associated_SNPs_15400 0 0 0 0 0 nucleolus 1 0.500231643963597 1 0.999536712072807 hm5C_site_17051 DeepMRMD:1;iRNA_m5C:0.999536712072807 17052 chr8 145698065 145698065 1 + C G BLCA 145698085 + 145698065 145698105 41 CCACCGCGCGCTCCAGGCACCGCAGGTACCACGGCCGGTGC GCACCGCGCGCTCCAGGCACCGCAGGTACCACGGCCGGTGC < 41bp 1 0.68921546512303 1 0.515072822570801 experiment 0.621569069753941 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145698085 chr8:145698065 nonsynonymous SNV 0.026 0 1 hm5C_associated_SNPs_15401 0 0 0 0 1 nucleolus 1 0.500229617532884 0.969854354858398 0.999540764934231 hm5C_site_17052 DeepMRMD:0.969854354858398;iRNA_m5C:0.999540764934231 17053 chr17 45376748 45376748 1 + C T BLCA 45376744 + 45376724 45376764 41 GGCTACTACTGCAACTGTACCACGCGTACTGACACCTGCAT GGCTACTACTGCAACTGTACCACGTGTACTGACACCTGCAT < 41bp 1 0.655905707521549 1 0.119853109121323 experiment 0.688188584956902 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376744 chr17:45376748 nonsynonymous SNV 0.403 5 25 hm5C_associated_SNPs_15402 0 0 0 0 1 cytosol 1 0.500247043060346 1 0.999505913879308 hm5C_site_17053 DeepMRMD:1;iRNA_m5C:0.999505913879308 17054 chr1 70687346 70687346 1 + C A BLCA 70687362 + 70687342 70687382 41 CCAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGC CCAGAACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGC < 41bp 1 0.631448779562368 1 0.708415448665619 experiment 0.737102440875264 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687362 chr1:70687346 nonsynonymous SNV 0.876 1 5 hm5C_associated_SNPs_15404 0 0 1 0 2 Nucleus 1 0.500231643921092 0.583169102668762 0.999536712157815 hm5C_site_17054 DeepMRMD:0.583169102668762;iRNA_m5C:0.999536712157815 17055 chr1 70687346 70687346 1 + C A BLCA 70687363 + 70687343 70687383 41 CAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCG CAGAACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCG < 41bp 1 0.546913434453238 1 0.51585590839386 experiment 0.906173131093524 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687363 chr1:70687346 nonsynonymous SNV 0.876 1 4 hm5C_associated_SNPs_15405 0 0 1 0 2 Nucleus 1 0.500231643922114 0.96828818321228 0.999536712155772 hm5C_site_17055 DeepMRMD:0.96828818321228;iRNA_m5C:0.999536712155772 17056 chr2 37475333 37475333 1 + A G BLCA 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATGTGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA < 41bp 1 0.400789880262967 1 0.497036188840866 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475333 nonsynonymous SNV 0.983 3 4 hm5C_associated_SNPs_15406 0 0 1 0 1 chromatin 1 0.500255768685352 1 0.999488462629295 hm5C_site_17056 DeepMRMD:1;iRNA_m5C:0.999488462629295 17057 chr2 37475333 37475333 1 + A G BLCA 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATGTGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT < 41bp 1 0.410268471055376 1 0.337448716163635 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475333 nonsynonymous SNV 0.983 3 3 hm5C_associated_SNPs_15407 0 0 1 0 1 chromatin 1 0.500231643347935 1 0.99953671330413 hm5C_site_17057 DeepMRMD:1;iRNA_m5C:0.99953671330413 17058 chr5 33455765 33455765 1 + G C BLCA 33455756 + 33455736 33455776 41 AGAAAATCATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA AGAAAATCATTAAAGAAAAACAAGCTTTTCAAAGACTGGAA < 41bp 1 0.320246474071886 1 0.330920398235321 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33455756 chr5:33455765 nonsynonymous SNV 0.996 1 30 hm5C_associated_SNPs_15408 0 0 1 0 2 Nucleus 1 0.50023154929004 1 0.999536901419919 hm5C_site_17058 DeepMRMD:1;iRNA_m5C:0.999536901419919 17059 chr1 70687345 70687345 1 + G T BLCA 70687362 + 70687342 70687382 41 CCAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGC CCATCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGC < 41bp 1 0.600763594020486 1 0.655750036239624 experiment 0.798472811959027 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687362 chr1:70687345 nonsynonymous SNV 0.896 1 4 hm5C_associated_SNPs_15409 0 0 1 0 2 Nucleus 1 0.500231643921092 0.688499927520752 0.999536712157815 hm5C_site_17059 DeepMRMD:0.688499927520752;iRNA_m5C:0.999536712157815 17060 chr1 70687345 70687345 1 + G T BLCA 70687363 + 70687343 70687383 41 CAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCG CATCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCG < 41bp 1 0.607559678099124 1 0.498528987169266 experiment 0.784880643801751 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687363 chr1:70687345 nonsynonymous SNV 0.896 1 3 hm5C_associated_SNPs_15410 0 0 1 0 2 Nucleus 1 0.50023164392218 1 0.999536712155639 hm5C_site_17060 DeepMRMD:1;iRNA_m5C:0.999536712155639 17061 chr4 103522086 103522086 1 + C G BLCA 103522101 + 103522081 103522121 41 ATTCTCAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT ATTCTGAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT < 41bp 1 0.178924878457587 1 0.372961401939392 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103522101 chr4:103522086 nonsynonymous SNV 0.963 0 6 hm5C_associated_SNPs_15411 0 0 1 0 1 Ribosome 1 0.500231644043026 1 0.999536711913949 hm5C_site_17061 DeepMRMD:1;iRNA_m5C:0.999536711913949 17062 chr6 30692163 30692163 1 + G C BLCA 30692147 + 30692127 30692167 41 GCAGAAGAGGAGGAGGATTTCGGTGAGGAGGCCGAAGAGGA GCAGAAGAGGAGGAGGATTTCGGTGAGGAGGCCGAACAGGA < 41bp 1 0.671825485170609 1 0.722289502620697 experiment 0.656349029658781 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TUBB ENSG00000196230 CDS Human protein_coding chr6:30692147 chr6:30692163 nonsynonymous SNV 0.979 0 37 hm5C_associated_SNPs_15412 0 0 1 0 0 Cytosol 1 0.500231643921094 0.555420994758606 0.999536712157812 hm5C_site_17062 DeepMRMD:0.555420994758606;iRNA_m5C:0.999536712157812 17063 chr12 57604261 57604261 1 + C G BLCA 57604244 + 57604224 57604264 41 CACTGTCGCAATGGGGGCACCTGTGCTGCCTCCCCCTCTGG CACTGTCGCAATGGGGGCACCTGTGCTGCCTCCCCCTGTGG < 41bp 1 0.13926748102704 1 0.176170766353607 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604244 chr12:57604261 nonsynonymous SNV 0.032 0 38 hm5C_associated_SNPs_15413 0 0 1 0 1 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17063 DeepMRMD:1;iRNA_m5C:0.999536712157815 17064 chr4 153896268 153896268 1 + G C BLCA 153896264 + 153896244 153896284 41 AAACCTCAGGCCTCGGGGGGCCAGGAGGAGGCCCCCAACCC AAACCTCAGGCCTCGGGGGGCCAGCAGGAGGCCCCCAACCC < 41bp 1 0.173900999021362 1 0.650335311889648 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896264 chr4:153896268 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_15414 0 0 0 0 0 Nucleus 1 0.500231643937097 0.699329376220704 0.999536712125806 hm5C_site_17064 DeepMRMD:0.699329376220704;iRNA_m5C:0.999536712125806 17065 chr4 153896268 153896268 1 + G C BLCA 153896278 + 153896258 153896298 41 GGGGGGCCAGGAGGAGGCCCCCAACCCACCCTCAGCACAGG GGGGGGCCAGCAGGAGGCCCCCAACCCACCCTCAGCACAGG < 41bp 1 0.0744409799561528 1 0.393022656440735 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896278 chr4:153896268 nonsynonymous SNV 0.014 0 11 hm5C_associated_SNPs_15415 0 0 0 0 0 Nucleus 1 0.500231643896227 1 0.999536712207546 hm5C_site_17065 DeepMRMD:1;iRNA_m5C:0.999536712207546 17066 chr4 153896268 153896268 1 + G C BLCA 153896279 + 153896259 153896299 41 GGGGGCCAGGAGGAGGCCCCCAACCCACCCTCAGCACAGGC GGGGGCCAGCAGGAGGCCCCCAACCCACCCTCAGCACAGGC < 41bp 1 0.238128854316903 1 0.145888864994049 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896279 chr4:153896268 nonsynonymous SNV 0.014 0 10 hm5C_associated_SNPs_15416 0 0 0 0 0 Nucleus 1 0.500231643572562 1 0.999536712854877 hm5C_site_17066 DeepMRMD:1;iRNA_m5C:0.999536712854877 17067 chr1 198233300 198233300 1 + G A BLCA 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTAAAGATAATGAACTAAA < 41bp 1 0.205822766854502 1 0.355567902326584 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233300 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_15417 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_17067 DeepMRMD:1;iRNA_m5C:0.999536712157815 17068 chr14 24707973 24707973 1 + G C BLCA 24707977 + 24707957 24707997 41 GAATCCAATCTTCAGTGAGGCGTGCTAGACCTGAGCAGTTC GAATCCAATCTTCAGTCAGGCGTGCTAGACCTGAGCAGTTC < 41bp 1 0.467325303453128 1 0.254956066608429 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPR2 ENSG00000100938 CDS Human protein_coding chr14:24707977 chr14:24707973 nonsynonymous SNV 0.589 0 17 hm5C_associated_SNPs_15418 0 0 1 0 0 Ribosome 1 0.500231643910799 1 0.999536712178402 hm5C_site_17068 DeepMRMD:1;iRNA_m5C:0.999536712178402 17069 chrX 47083822 47083822 1 + G T BLCA 47083814 + 47083794 47083834 41 CGAGGACTTGAAGATGGGGTCTGATGGGGAGAGTGACCAGG CGAGGACTTGAAGATGGGGTCTGATGGGTAGAGTGACCAGG < 41bp 1 0.401603449386662 1 0.0933302640914917 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CDK16 ENSG00000102225 CDS Human protein_coding chrX:47083814 chrX:47083822 stopgain 1.000 1 29 hm5C_associated_SNPs_15419 0 0 1 0 2 Ribosome 1 0.500231643100168 1 0.999536713799665 hm5C_site_17069 DeepMRMD:1;iRNA_m5C:0.999536713799665 17070 chr1 117618442 117618442 1 + C A BLCA 117618425 + 117618405 117618445 41 GTGTTTCCAAGAAGGTAGAACCCTCAGACCCAGTAGCCCGG GTGTTTCCAAGAAGGTAGAACCCTCAGACCCAGTAGCACGG < 41bp 1 0.0851023149715816 1 0.107341945171356 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117618425 chr1:117618442 synonymous SNV . 0 38 hm5C_associated_SNPs_15420 0 0 1 0 1 Nucleus 1 0.50023164392112 1 0.999536712157759 hm5C_site_17070 DeepMRMD:1;iRNA_m5C:0.999536712157759 17071 chr19 14142711 14142711 1 + C T BLCA 14142724 + 14142704 14142744 41 CCCCTTTCTGGCTGTGGCCGCTGCCCAAGCTGGCGCTGCTG CCCCTTTTTGGCTGTGGCCGCTGCCCAAGCTGGCGCTGCTG < 41bp 1 0.396438596674948 1 0.350324362516403 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14142724 chr19:14142711 synonymous SNV . 0 8 hm5C_associated_SNPs_15421 0 0 1 0 0 chromatin 1 0.500231643921261 1 0.999536712157477 hm5C_site_17071 DeepMRMD:1;iRNA_m5C:0.999536712157477 17072 chr11 64978304 64978304 1 + C T BLCA 64978306 + 64978286 64978326 41 ATTTTTCAAAACTCTGGACACAGATCTGGATGGAGTTGTGA ATTTTTCAAAACTCTGGATACAGATCTGGATGGAGTTGTGA < 41bp 1 0.14167386446292 1 0.0947071611881256 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64978306 chr11:64978304 synonymous SNV . 0 19 hm5C_associated_SNPs_15422 0 0 1 0 2 Ribosome 1 0.500231644592114 1 0.999536710815772 hm5C_site_17072 DeepMRMD:1;iRNA_m5C:0.999536710815772 17073 chr1 235577754 235577754 1 + G A BLCA 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCCAACAGGAGGATCCTTTATTCGTCCGAACAAGG < 41bp 1 0.0107089117517425 1 0.0346108078956604 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577754 synonymous SNV . 0 10 hm5C_associated_SNPs_15423 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17073 DeepMRMD:1;iRNA_m5C:0.999536712157815 17074 chr1 228879189 228879189 1 + G C BLCA 228879178 + 228879158 228879198 41 CACTGTCCCAAAGCCCCCATCATCCTAGTTGGAACGCAGTC CACTGTCCCAAAGCCCCCATCATCCTAGTTGCAACGCAGTC < 41bp 1 0.0925332975995145 1 0.188937127590179 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOU ENSG00000116574 CDS Human protein_coding chr1:228879178 chr1:228879189 nonsynonymous SNV 0.477 5 32 hm5C_associated_SNPs_15424 0 0 1 0 0 Ribosome 1 0.50023164389119 1 0.999536712217619 hm5C_site_17074 DeepMRMD:1;iRNA_m5C:0.999536712217619 17075 chr11 63994361 63994361 1 + C A BLCA 63994351 + 63994331 63994371 41 GCCTATTGGCTCTCGGGGGCCACAGCTGCTCCTGCGCCTGG GCCTATTGGCTCTCGGGGGCCACAGCTGCTACTGCGCCTGG < 41bp 1 0.611339472054891 1 0.212458997964859 experiment 0.777321055890219 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63994351 chr11:63994361 synonymous SNV . 0 31 hm5C_associated_SNPs_15425 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17075 DeepMRMD:1;iRNA_m5C:0.999536712157815 17076 chr19 1434829 1434829 1 + C T BLCA 1434836 + 1434816 1434856 41 TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG TCCGTGCCAGGGTTGGGGGGCCCCCCCGCCGGCGGCAGCGG < 41bp 1 0.294524440870968 1 0.158483535051346 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434836 chr19:1434829 nonsynonymous SNV 0.955 1 14 hm5C_associated_SNPs_15426 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17076 DeepMRMD:1;iRNA_m5C:0.999536712157815 17077 chr19 1434829 1434829 1 + C T BLCA 1434837 + 1434817 1434857 41 CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC CCGTGCCAGGGTTGGGGGGCCCCCCCGCCGGCGGCAGCGGC < 41bp 1 0.376039760048142 1 0.176503568887711 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434837 chr19:1434829 nonsynonymous SNV 0.955 1 13 hm5C_associated_SNPs_15427 0 0 1 0 1 chromatin 1 0.50023164392109 1 0.99953671215782 hm5C_site_17077 DeepMRMD:1;iRNA_m5C:0.99953671215782 17078 chr19 1434829 1434829 1 + C T BLCA 1434838 + 1434818 1434858 41 CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT CGTGCCAGGGTTGGGGGGCCCCCCCGCCGGCGGCAGCGGCT < 41bp 1 0.461231017288944 1 0.366003692150116 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434838 chr19:1434829 nonsynonymous SNV 0.955 1 12 hm5C_associated_SNPs_15428 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17078 DeepMRMD:1;iRNA_m5C:0.999536712157815 17079 chr10 118314751 118314751 1 + C T BLCA 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGTGATGC < 41bp 1 0.313829953693348 1 0.194309294223785 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314751 synonymous SNV . 0 36 hm5C_associated_SNPs_15430 0 0 0 0 1 unknown 1 0.500231643989015 1 0.999536712021971 hm5C_site_17079 DeepMRMD:1;iRNA_m5C:0.999536712021971 17080 chr10 118314751 118314751 1 + C T BLCA 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGGCACACCTGAATTAGTCCGATTGGACCCCAGTGATGCC < 41bp 1 0.232979538189309 1 0.0510565936565399 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314751 synonymous SNV . 0 35 hm5C_associated_SNPs_15431 0 0 0 0 1 unknown 1 0.500231770833084 1 0.999536458333833 hm5C_site_17080 DeepMRMD:1;iRNA_m5C:0.999536458333833 17081 chr10 118314751 118314751 1 + C T BLCA 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCGATTGGACCCCAGTGATGCCAAATTTGT < 41bp 1 0.597060542988066 1 0.0751306116580963 experiment 0.805878914023868 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314751 synonymous SNV . 0 27 hm5C_associated_SNPs_15432 0 0 0 0 1 unknown 1 0.500231643295419 1 0.999536713409162 hm5C_site_17081 DeepMRMD:1;iRNA_m5C:0.999536713409162 17082 chr10 118314751 118314751 1 + C T BLCA 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCGATTGGACCCCAGTGATGCCAAATTTGTG < 41bp 1 0.200656798339582 1 0.0974610447883606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314751 synonymous SNV . 0 26 hm5C_associated_SNPs_15433 0 0 0 0 1 unknown 1 0.500231643932564 1 0.999536712134871 hm5C_site_17082 DeepMRMD:1;iRNA_m5C:0.999536712134871 17083 chr10 118314751 118314751 1 + C T BLCA 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCGATTGGACCCCAGTGATGCCAAATTTGTGG < 41bp 1 0.381629113325442 1 0.210116744041443 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314751 synonymous SNV . 0 25 hm5C_associated_SNPs_15434 0 0 0 0 1 unknown 1 0.500231643921077 1 0.999536712157846 hm5C_site_17083 DeepMRMD:1;iRNA_m5C:0.999536712157846 17084 chr10 118314751 118314751 1 + C T BLCA 118314748 + 118314728 118314768 41 GAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGA GAATTAGTCCGATTGGACCCCAGTGATGCCAAATTTGTGGA < 41bp 1 0.487720679601561 1 0.24693176150322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314748 chr10:118314751 synonymous SNV . 0 24 hm5C_associated_SNPs_15435 0 0 0 0 1 unknown 1 0.500231688792146 1 0.999536622415709 hm5C_site_17084 DeepMRMD:1;iRNA_m5C:0.999536622415709 17085 chr10 118314751 118314751 1 + C T BLCA 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCGATTGGACCCCAGTGATGCCAAATTTGTGGATGTAATTC < 41bp 1 0.361544678053332 1 0.0375348329544067 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314751 synonymous SNV . 0 16 hm5C_associated_SNPs_15436 0 0 0 0 1 unknown 1 0.500231643926893 1 0.999536712146215 hm5C_site_17085 DeepMRMD:1;iRNA_m5C:0.999536712146215 17086 chr10 118314751 118314751 1 + C T BLCA 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CGATTGGACCCCAGTGATGCCAAATTTGTGGATGTAATTCA < 41bp 1 0.388180308880454 1 0.120315283536911 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314751 synonymous SNV . 0 15 hm5C_associated_SNPs_15437 0 0 0 0 1 unknown 1 0.50023164392336 1 0.999536712153279 hm5C_site_17086 DeepMRMD:1;iRNA_m5C:0.999536712153279 17087 chr12 65632588 65632588 1 + T C BLCA 65632568 + 65632548 65632588 41 ACGTGCTTTTGTTACTGTAACTCACAGATTATTGTTGTTAT ACGTGCTTTTGTTACTGTAACTCACAGATTATTGTTGTTAC < 41bp 1 0.186546310485405 1 0.115595400333405 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65632568 chr12:65632588 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_15438 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643949941 1 0.999536712100117 hm5C_site_17087 DeepMRMD:1;iRNA_m5C:0.999536712100117 17088 chr16 70562829 70562829 1 + C T BLCA 70562823 + 70562803 70562843 41 CCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC CCCGTGGGAAGATCTTGGAGCTGCTTTGCCCAGACCCCAAC < 41bp 1 0.367694006194206 1 0.113999664783478 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70562823 chr16:70562829 nonsynonymous SNV 0.998 3 27 hm5C_associated_SNPs_15439 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_17088 DeepMRMD:1;iRNA_m5C:0.999536712157815 17089 chr11 64950958 64950958 1 + C G BLCA 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTGTTGGCGGCCATCGCCTCCCTCACTCTCAA < 41bp 1 0.247761304810031 1 0.180250585079193 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950958 synonymous SNV . 0 12 hm5C_associated_SNPs_15440 0 0 1 0 1 Ribosome 1 0.500231645145704 1 0.999536709708593 hm5C_site_17089 DeepMRMD:1;iRNA_m5C:0.999536709708593 17090 chr17 40714723 40714723 1 + C T BLCA 40714704 + 40714684 40714724 41 TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCG TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTTG < 41bp 1 0.556907573010405 1 0.337471723556519 experiment 0.886184853979189 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40714704 chr17:40714723 nonsynonymous SNV 0.944 1 40 hm5C_associated_SNPs_15441 0 0 1 0 1 Ribosome 1 0.500231643958732 1 0.999536712082536 hm5C_site_17090 DeepMRMD:1;iRNA_m5C:0.999536712082536 17091 chr12 22208204 22208204 1 + G C BLCA 22208197 + 22208177 22208217 41 AGCTCTACCTCACTAGATGCCATCATAGAATTTCTTAATTA AGCTCTACCTCACTAGATGCCATCATACAATTTCTTAATTA < 41bp 1 0.46639519676336 1 0.0304044485092163 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208197 chr12:22208204 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_15442 0 0 1 1 1 Ribosome 1 0.500231636036168 1 0.999536727927665 hm5C_site_17091 DeepMRMD:1;iRNA_m5C:0.999536727927665 17092 chr2 99182131 99182131 1 + G A BLCA 99182143 + 99182123 99182163 41 GAGGACATGAGCCTTGGGATCATGGACTTGAGGAACGTGAC GAGGACATAAGCCTTGGGATCATGGACTTGAGGAACGTGAC < 41bp 1 0.354968540958104 1 0.273736894130707 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99182143 chr2:99182131 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_15443 0 0 1 0 2 Ribosome 1 0.500231643898593 1 0.999536712202815 hm5C_site_17092 DeepMRMD:1;iRNA_m5C:0.999536712202815 17093 chr11 57575892 57575892 1 + C T BLCA 57575904 + 57575884 57575924 41 CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC CTCTGCGTTAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC < 41bp 1 0.0870221913083921 1 0.0448925793170929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575904 chr11:57575892 stopgain 1.000 1 9 hm5C_associated_SNPs_15444 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17093 DeepMRMD:1;iRNA_m5C:0.999536712157815 17094 chr16 67914796 67914796 1 + G A BLCA 67914803 + 67914783 67914823 41 CCCCTCCCTCCTGGAGGCAGCCTTGACCCAGGAGGCCTCGA CCCCTCCCTCCTGAAGGCAGCCTTGACCCAGGAGGCCTCGA < 41bp 1 0.0313427528391566 1 0.1311896443367 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914803 chr16:67914796 nonsynonymous SNV 0.993 4 14 hm5C_associated_SNPs_15445 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17094 DeepMRMD:1;iRNA_m5C:0.999536712157815 17095 chr2 32339806 32339806 1 + C T BLCA 32339810 + 32339790 32339830 41 GGATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTA GGATCTGCAGGCCTTTTAGGCCACCATAGAGCACCTAGTTA < 41bp 1 0.105169738761967 1 0.0565356314182281 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339810 chr2:32339806 nonsynonymous SNV 0.862 1 17 hm5C_associated_SNPs_15446 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17095 DeepMRMD:1;iRNA_m5C:0.999536712157815 17096 chr2 32339806 32339806 1 + C T BLCA 32339813 + 32339793 32339833 41 TCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTACAG TCTGCAGGCCTTTTAGGCCACCATAGAGCACCTAGTTACAG < 41bp 1 0.272791817078029 1 0.0547998249530792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339813 chr2:32339806 nonsynonymous SNV 0.862 1 14 hm5C_associated_SNPs_15448 0 0 1 0 2 Ribosome 1 0.500231643617763 1 0.999536712764474 hm5C_site_17096 DeepMRMD:1;iRNA_m5C:0.999536712764474 17097 chr12 112915812 112915812 1 + G A BLCA 112915794 + 112915774 112915814 41 CTCCCGAGTGATTGTCATGACAACGAAAGAAGTGGAGAGAG CTCCCGAGTGATTGTCATGACAACGAAAGAAGTGGAGAAAG < 41bp 1 0.575829301245864 1 0.270248502492905 experiment 0.848341397508272 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915794 chr12:112915812 nonsynonymous SNV 0.999 2 39 hm5C_associated_SNPs_15449 0 0 1 0 1 Ribosome 1 0.500231644270258 1 0.999536711459483 hm5C_site_17097 DeepMRMD:1;iRNA_m5C:0.999536711459483 17098 chr10 12159712 12159712 1 + C T BLCA 12159721 + 12159701 12159741 41 ACCAGGAACAACATTTAACCCGGTCATTGGTGATTCATCTG ACCAGGAACAATATTTAACCCGGTCATTGGTGATTCATCTG < 41bp 1 0.169016804223425 1 0.0632751286029816 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12159721 chr10:12159712 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_15450 0 0 1 0 2 Endoplasmic reticulum 1 0.500233395380776 1 0.999533209238447 hm5C_site_17098 DeepMRMD:1;iRNA_m5C:0.999533209238447 17099 chr5 132427025 132427025 1 + G A BLCA 132427041 + 132427021 132427061 41 AAATGAGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG AAATAAGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG < 41bp 1 0.288308150475949 1 0.470790594816208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427041 chr5:132427025 nonsynonymous SNV 0.983 1 5 hm5C_associated_SNPs_15451 0 0 1 0 1 Cytosol 1 0.500231643939072 1 0.999536712121857 hm5C_site_17099 DeepMRMD:1;iRNA_m5C:0.999536712121857 17100 chr7 140404733 140404733 1 + G C BLCA 140404750 + 140404730 140404770 41 ACTGAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG ACTCAAGGTGTAGACTCAGCCTCACTCTGTACAAGTGGGTG < 41bp 1 0.210720575286028 1 0.172384738922119 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB2 ENSG00000090266 CDS Human protein_coding chr7:140404750 chr7:140404733 stoploss 0.552 0 4 hm5C_associated_SNPs_15452 0 0 1 1 1 Ribosome 1 0.500205125646886 1 0.999589748706227 hm5C_site_17100 DeepMRMD:1;iRNA_m5C:0.999589748706227 17101 chr11 12243284 12243284 1 + C A BLCA 12243280 + 12243260 12243300 41 AAGAGCTGGAACCAGGGCACCCCTCCCCTGGAGCTGCTGGC AAGAGCTGGAACCAGGGCACCCCTACCCTGGAGCTGCTGGC < 41bp 1 0.169862727763907 1 0.131731301546097 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12243280 chr11:12243284 nonsynonymous SNV 0.766 0 25 hm5C_associated_SNPs_15453 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_17101 DeepMRMD:1;iRNA_m5C:0.999536712157815 17102 chr19 49377935 49377935 1 + G C BLCA 49377943 + 49377923 49377963 41 ACTTCAGGGGCTGGGGATATCGACCTGGAAAAGAGACAGAG ACTTCAGGGGCTCGGGATATCGACCTGGAAAAGAGACAGAG < 41bp 1 0.615384549737356 1 0.748502016067505 experiment 0.769230900525289 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377943 chr19:49377935 nonsynonymous SNV 0.019 2 13 hm5C_associated_SNPs_15454 0 0 1 0 0 Cytosol 1 0.500231643921096 0.50299596786499 0.999536712157807 hm5C_site_17102 DeepMRMD:0.50299596786499;iRNA_m5C:0.999536712157807 17103 chr9 71842743 71842743 1 + G C BLCA 71842734 + 71842714 71842754 41 CTCCAGAGGAGAGACGTCATCAGTATTCTGATTATGATTAT CTCCAGAGGAGAGACGTCATCAGTATTCTCATTATGATTAT < 41bp 1 0.643243460200672 1 0.234779298305511 experiment 0.713513079598656 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71842734 chr9:71842743 nonsynonymous SNV 0.962 4 30 hm5C_associated_SNPs_15455 0 0 0 0 2 Nucleus 1 0.500231643849204 1 0.999536712301592 hm5C_site_17103 DeepMRMD:1;iRNA_m5C:0.999536712301592 17104 chr12 57588463 57588463 1 + C T BLCA 57588474 + 57588454 57588494 41 TGAACATGGCGAGGACGAGACCCACTGCAGTGAGTGACCAC TGAACATGGTGAGGACGAGACCCACTGCAGTGAGTGACCAC < 41bp 1 0.0374849503042203 1 0.0358318090438843 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57588474 chr12:57588463 synonymous SNV . 0 10 hm5C_associated_SNPs_15456 0 0 1 0 1 Exosome 1 0.500231571374229 1 0.999536857251541 hm5C_site_17104 DeepMRMD:1;iRNA_m5C:0.999536857251541 17105 chr11 71946465 71946465 1 + G C BLCA 71946459 + 71946439 71946479 41 GCTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACC GCTCCATGAAGGTGCGGGTGCCCACGCAGCGCCTGGGCACC < 41bp 1 0.0966762875033806 1 0.070339173078537 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946459 chr11:71946465 nonsynonymous SNV 0.996 2 27 hm5C_associated_SNPs_15457 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17105 DeepMRMD:1;iRNA_m5C:0.999536712157815 17106 chr11 71946465 71946465 1 + G C BLCA 71946460 + 71946440 71946480 41 CTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCC CTCCATGAAGGTGCGGGTGCCCACGCAGCGCCTGGGCACCC < 41bp 1 0.234931918329519 1 0.0634771883487701 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946460 chr11:71946465 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_15458 0 0 1 0 1 Cytosol 1 0.500231638757634 1 0.999536722484733 hm5C_site_17106 DeepMRMD:1;iRNA_m5C:0.999536722484733 17107 chr11 71946465 71946465 1 + G C BLCA 71946461 + 71946441 71946481 41 TCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCCG TCCATGAAGGTGCGGGTGCCCACGCAGCGCCTGGGCACCCG < 41bp 1 0.675224979479805 1 0.289904296398163 experiment 0.64955004104039 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946461 chr11:71946465 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_15459 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157811 hm5C_site_17107 DeepMRMD:1;iRNA_m5C:0.999536712157811 17108 chr11 71946465 71946465 1 + G C BLCA 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG GTGCCCACGCAGCGCCTGGGCACCCGTGAGCGGCTCTACGG < 41bp 1 0.382062397721179 1 0.0381741225719452 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946465 nonsynonymous SNV 0.996 2 10 hm5C_associated_SNPs_15460 0 0 1 0 1 Cytosol 1 0.500231643794434 1 0.999536712411133 hm5C_site_17108 DeepMRMD:1;iRNA_m5C:0.999536712411133 17109 chr11 71946465 71946465 1 + G C BLCA 71946478 + 71946458 71946498 41 GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG GCCCACGCAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG < 41bp 1 0.302737684776419 1 0.0652424395084381 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946478 chr11:71946465 nonsynonymous SNV 0.996 2 8 hm5C_associated_SNPs_15461 0 0 1 0 1 Cytosol 1 0.500231643920459 1 0.999536712159082 hm5C_site_17109 DeepMRMD:1;iRNA_m5C:0.999536712159082 17110 chr11 71946465 71946465 1 + G C BLCA 71946479 + 71946459 71946499 41 CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG CCCACGCAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG < 41bp 1 0.174630146036012 1 0.493315488100052 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946479 chr11:71946465 nonsynonymous SNV 0.996 2 7 hm5C_associated_SNPs_15462 0 0 1 0 1 Cytosol 1 0.500231526196251 1 0.999536947607498 hm5C_site_17110 DeepMRMD:1;iRNA_m5C:0.999536947607498 17111 chr19 41078260 41078260 1 + G A BLCA 41078256 + 41078236 41078276 41 TCCTGCAGGACCCAGGATGGCAGTGAGTTTTTGCTCCAGGC TCCTGCAGGACCCAGGATGGCAGTAAGTTTTTGCTCCAGGC < 41bp 1 0.292563428213104 1 0.0778204500675201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41078256 chr19:41078260 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_15464 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17111 DeepMRMD:1;iRNA_m5C:0.999536712157815 17112 chr5 102360917 102360917 1 + G A BLCA 102360927 + 102360907 102360947 41 AACAGAAACTGATCAAAGAGCCAGGCTCGGGAGTGCCTGTT AACAGAAACTAATCAAAGAGCCAGGCTCGGGAGTGCCTGTT < 41bp 1 0.31879835945017 1 0.717759132385254 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102360927 chr5:102360917 synonymous SNV . 0 11 hm5C_associated_SNPs_15466 0 0 0 0 2 Ribosome 1 0.500231643922615 0.564481735229492 0.99953671215477 hm5C_site_17112 DeepMRMD:0.564481735229492;iRNA_m5C:0.99953671215477 17113 chr7 69583172 69583172 1 + G A BLCA 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAAAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA < 41bp 1 0.117320540081207 1 0.123046636581421 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583172 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_15467 0 0 0 0 2 Nucleus 1 0.500231643921116 1 0.999536712157769 hm5C_site_17113 DeepMRMD:1;iRNA_m5C:0.999536712157769 17114 chr14 93125804 93125804 1 + C G BLCA 93125812 + 93125792 93125832 41 CTCCATGGCCCTCGGCAACCCAGGTCAGTGGGCAGCCGGGA CTCCATGGCCCTGGGCAACCCAGGTCAGTGGGCAGCCGGGA < 41bp 1 0.595534548164652 1 0.63863867521286 experiment 0.808930903670696 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93125812 chr14:93125804 synonymous SNV . 0 13 hm5C_associated_SNPs_15468 0 0 0 0 1 cytosol 1 0.500231643921092 0.72272264957428 0.999536712157815 hm5C_site_17114 DeepMRMD:0.72272264957428;iRNA_m5C:0.999536712157815 17115 chr17 18167950 18167950 1 + G C BLCA 18167953 + 18167933 18167973 41 TGCTCATCGGCAGCCTGGAGCAGGCCAGCCTGCCCTGCCAC TGCTCATCGGCAGCCTGCAGCAGGCCAGCCTGCCCTGCCAC < 41bp 1 0.644320896601014 1 0.949483156204224 experiment 0.711358206797973 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MIEF2 ENSG00000177427 CDS Human protein_coding chr17:18167953 chr17:18167950 nonsynonymous SNV 0.997 4 18 hm5C_associated_SNPs_15469 0 0 0 0 0 Endoplasmic reticulum 1 0.500231642031118 0.101033687591552 0.999536715937764 hm5C_site_17115 DeepMRMD:0.101033687591552;iRNA_m5C:0.999536715937764 17116 chr8 1876682 1876682 1 + A G BLCA 1876673 + 1876653 1876693 41 CCCAAAGTCATTGAGTGCTTCAACGTGGAATCTCGCATCCT CCCAAAGTCATTGAGTGCTTCAACGTGGAGTCTCGCATCCT < 41bp 1 0.397101331905186 1 0.221286654472351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1876673 chr8:1876682 synonymous SNV . 0 30 hm5C_associated_SNPs_15470 0 0 0 0 1 Nucleus 1 0.500231643970551 1 0.999536712058898 hm5C_site_17116 DeepMRMD:1;iRNA_m5C:0.999536712058898 17117 chr10 85909866 85909866 1 + C A BLCA 85909855 + 85909835 85909875 41 CTCTGACAATATTAGGGGGTCCTCTTCTCATCAGAGCTGCA CTCTGACAATATTAGGGGGTCCTCTTCTCATAAGAGCTGCA < 41bp 1 0.0579061366824604 1 0.0280451476573944 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GHITM ENSG00000165678 CDS Human protein_coding chr10:85909855 chr10:85909866 synonymous SNV . 0 32 hm5C_associated_SNPs_15471 0 0 1 0 1 Ribosome 1 0.500231643918401 1 0.999536712163197 hm5C_site_17117 DeepMRMD:1;iRNA_m5C:0.999536712163197 17118 chr10 85909866 85909866 1 + C A BLCA 85909856 + 85909836 85909876 41 TCTGACAATATTAGGGGGTCCTCTTCTCATCAGAGCTGCAT TCTGACAATATTAGGGGGTCCTCTTCTCATAAGAGCTGCAT < 41bp 1 0.332834926755106 1 0.0391121506690979 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GHITM ENSG00000165678 CDS Human protein_coding chr10:85909856 chr10:85909866 synonymous SNV . 0 31 hm5C_associated_SNPs_15472 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17118 DeepMRMD:1;iRNA_m5C:0.999536712157815 17119 chr10 85909866 85909866 1 + C A BLCA 85909858 + 85909838 85909878 41 TGACAATATTAGGGGGTCCTCTTCTCATCAGAGCTGCATGG TGACAATATTAGGGGGTCCTCTTCTCATAAGAGCTGCATGG < 41bp 1 0.499687980107581 1 0.251644492149353 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GHITM ENSG00000165678 CDS Human protein_coding chr10:85909858 chr10:85909866 synonymous SNV . 0 29 hm5C_associated_SNPs_15473 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17119 DeepMRMD:1;iRNA_m5C:0.999536712157815 17120 chr1 215777626 215777626 1 + G C BLCA 215777635 + 215777615 215777655 41 TCATGCTATCAGAGAAGCATCTTGTATCAGGTAAAATGATT TCATGCTATCACAGAAGCATCTTGTATCAGGTAAAATGATT < 41bp 1 0.167841825934462 1 0.0778402388095856 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215777635 chr1:215777626 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_15474 0 0 1 0 1 Ribosome 1 0.500231826416623 1 0.999536347166755 hm5C_site_17120 DeepMRMD:1;iRNA_m5C:0.999536347166755 17121 chr19 36223364 36223364 1 + G C BLCA 36223344 + 36223324 36223364 41 GGCTCCCCCTGGCCCGGCCCCATCTCCACCACCCCCTGAAG GGCTCCCCCTGGCCCGGCCCCATCTCCACCACCCCCTGAAC < 41bp 1 0.042857418191085 1 0.0673614740371704 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36223344 chr19:36223364 nonsynonymous SNV 0.998 4 41 hm5C_associated_SNPs_15475 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17121 DeepMRMD:1;iRNA_m5C:0.999536712157815 17122 chr17 77043909 77043909 1 + C T BLCA 77043900 + 77043880 77043920 41 TACTGCTACGTGCCCGGCCTCTACTTCTTCAGCCTCAACGT TACTGCTACGTGCCCGGCCTCTACTTCTTTAGCCTCAACGT < 41bp 1 0.261226084842995 1 0.101954877376556 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77043900 chr17:77043909 synonymous SNV . 0 30 hm5C_associated_SNPs_15476 0 0 0 0 0 exosome 1 0.5002316465154 1 0.9995367069692 hm5C_site_17122 DeepMRMD:1;iRNA_m5C:0.9995367069692 17123 chr17 43226866 43226866 1 + C G BLCA 43226860 + 43226840 43226880 41 GACGACTCGTCCGCTGGCGGCGACTTCCCGCCGCCGGCAGA GACGACTCGTCCGCTGGCGGCGACTTGCCGCCGCCGGCAGA < 41bp 1 0.4958991290867 1 0.14889121055603 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HEXIM1 ENSG00000186834 CDS Human protein_coding chr17:43226860 chr17:43226866 nonsynonymous SNV 0.040 0 27 hm5C_associated_SNPs_15477 0 0 1 0 0 Ribosome 1 0.500231643840876 1 0.999536712318248 hm5C_site_17123 DeepMRMD:1;iRNA_m5C:0.999536712318248 17124 chr1 155279912 155279912 1 + G T BLCA 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTCGTTCATCACTTCTCCCAGATCGTTAGGGT < 41bp 1 0.207910573104959 1 0.333400666713715 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279912 nonsynonymous SNV 0.989 0 18 hm5C_associated_SNPs_15478 0 0 1 0 3 Cytosol 1 0.500231643853789 1 0.999536712292422 hm5C_site_17124 DeepMRMD:1;iRNA_m5C:0.999536712292422 17125 chr4 115589294 115589294 1 + G A BLCA 115589284 + 115589264 115589304 41 CTGAGCCATGGTGGTTTGAACAGTATTTTTGAAACTATATA CTGAGCCATGGTGGTTTGAACAGTATTTTTAAAACTATATA < 41bp 1 0.485006587053129 1 0.0972437560558319 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UGT8 ENSG00000174607 CDS Human protein_coding chr4:115589284 chr4:115589294 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_15479 0 0 0 0 1 Ribosome 1 0.500231643943999 1 0.999536712112003 hm5C_site_17125 DeepMRMD:1;iRNA_m5C:0.999536712112003 17126 chr12 21598305 21598305 1 + G C BLCA 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TCTAAAATATTGGAAGAATTCCATGTTGAAGAACAATCAAG < 41bp 1 0.320443844956283 1 0.357246696949005 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598305 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_15480 0 0 1 0 2 Cytosol 1 0.500231570347549 1 0.999536859304902 hm5C_site_17126 DeepMRMD:1;iRNA_m5C:0.999536859304902 17127 chr16 845804 845804 1 + C G BLCA 845820 + 845800 845840 41 TGCTCCTGGACATTCTTGCACCCAAGCTCCGCCCCGTGAGT TGCTGCTGGACATTCTTGCACCCAAGCTCCGCCCCGTGAGT < 41bp 1 0.2944730630746 1 0.0788703262805939 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845820 chr16:845804 synonymous SNV . 0 5 hm5C_associated_SNPs_15481 0 0 1 0 1 Nucleus 1 0.500231643921096 1 0.999536712157808 hm5C_site_17127 DeepMRMD:1;iRNA_m5C:0.999536712157808 17128 chr3 127786429 127786429 1 + G C BLCA 127786410 + 127786390 127786430 41 ATGCTGGGCTCCTGTGCATTCTTCTCCAAAACGTGGATTGA ATGCTGGGCTCCTGTGCATTCTTCTCCAAAACGTGGATTCA < 41bp 1 0.251169408791153 1 0.295458137989044 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127786410 chr3:127786429 nonsynonymous SNV 0.991 2 40 hm5C_associated_SNPs_15482 0 0 1 0 1 Ribosome 1 0.500231644216871 1 0.999536711566258 hm5C_site_17128 DeepMRMD:1;iRNA_m5C:0.999536711566258 17129 chr14 53175509 53175509 1 + G C BLCA 53175498 + 53175478 53175518 41 CTAGTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGT CTAGTCATTGTTAAAGCTACCAATGGACCAACATATGTTGT < 41bp 1 0.169527467789857 1 0.546840786933899 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53175498 chr14:53175509 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_15483 0 0 1 0 2 Ribosome 1 0.500231644019931 0.906318426132202 0.999536711960137 hm5C_site_17129 DeepMRMD:0.906318426132202;iRNA_m5C:0.999536711960137 17130 chr14 23794476 23794476 1 + C T BLCA 23794459 + 23794439 23794479 41 CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATG CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATTATG < 41bp 1 0.25431612156559 1 0.166892826557159 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794459 chr14:23794476 nonsynonymous SNV 0.996 2 38 hm5C_associated_SNPs_15484 0 0 1 0 1 unknown 1 0.500231643924724 1 0.999536712150552 hm5C_site_17130 DeepMRMD:1;iRNA_m5C:0.999536712150552 17131 chr14 23794476 23794476 1 + C T BLCA 23794460 + 23794440 23794480 41 TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATGG TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATTATGG < 41bp 1 0.411871005433116 1 0.403824627399445 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794460 chr14:23794476 nonsynonymous SNV 0.996 2 37 hm5C_associated_SNPs_15485 0 0 1 0 1 unknown 1 0.500231643920998 1 0.999536712158005 hm5C_site_17131 DeepMRMD:1;iRNA_m5C:0.999536712158005 17132 chr1 186047318 186047318 1 + A C BLCA 186047314 + 186047294 186047334 41 ATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCCTTCAAT ATGTGTGGCTGTGAATGAGGCTGGCGAAGATTCCCTTCAAT < 41bp 1 0.164097705102309 1 0.674646556377411 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186047314 chr1:186047318 synonymous SNV . 0 25 hm5C_associated_SNPs_15486 0 0 0 0 2 nucleus 1 0.500231608415496 0.650706887245178 0.999536783169007 hm5C_site_17132 DeepMRMD:0.650706887245178;iRNA_m5C:0.999536783169007 17133 chr16 70562804 70562804 1 + C A BLCA 70562823 + 70562803 70562843 41 CCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC CACGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC < 41bp 1 0.259436629445416 1 0.0870944261550903 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70562823 chr16:70562804 synonymous SNV . 0 2 hm5C_associated_SNPs_15487 0 0 1 0 1 Cytosol 1 0.500339138378361 1 0.999321723243278 hm5C_site_17133 DeepMRMD:1;iRNA_m5C:0.999321723243278 17134 chr20 1902322 1902322 1 + C G BLCA 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACGTCACCTTGCAGGGGGACCCTGTTCGTGGGACTGCCAAC < 41bp 1 0.135628537465097 1 0.0282852053642273 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902322 nonsynonymous SNV 0.628 1 24 hm5C_associated_SNPs_15488 0 0 0 0 1 Nucleus 1 0.500231643754358 1 0.999536712491284 hm5C_site_17134 DeepMRMD:1;iRNA_m5C:0.999536712491284 17135 chr7 65751506 65751506 1 + G C BLCA 65751509 + 65751489 65751529 41 TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAGC TGTTTTCAGAGTGGAGACATCTACAGACCAAGTAATCAAGC < 41bp 1 0.618713223271032 1 0.585058271884918 experiment 0.762573553457937 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751509 chr7:65751506 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_15489 0 0 0 2 0 nucleoplasm 1 0.500231643910738 0.829883456230164 0.999536712178524 hm5C_site_17135 DeepMRMD:0.829883456230164;iRNA_m5C:0.999536712178524 17136 chr6 168352586 168352586 1 + C G BLCA 168352591 + 168352571 168352611 41 TCCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGA TCCTCGGGGGACAGTGTGTCCCCCGACCCGTGGAAGCGGGA < 41bp 1 0.196753505186611 1 0.386695384979248 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352591 chr6:168352586 nonsynonymous SNV 0.240 4 16 hm5C_associated_SNPs_15490 0 0 1 0 0 unknown 1 0.50023164391766 1 0.999536712164681 hm5C_site_17136 DeepMRMD:1;iRNA_m5C:0.999536712164681 17137 chr6 168352586 168352586 1 + C G BLCA 168352592 + 168352572 168352612 41 CCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGAC CCTCGGGGGACAGTGTGTCCCCCGACCCGTGGAAGCGGGAC < 41bp 1 0.538454155842279 1 0.476460367441177 experiment 0.923091688315443 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352592 chr6:168352586 nonsynonymous SNV 0.240 4 15 hm5C_associated_SNPs_15491 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_17137 DeepMRMD:1;iRNA_m5C:0.999536712157814 17138 chr6 168352586 168352586 1 + C G BLCA 168352593 + 168352573 168352613 41 CTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGACG CTCGGGGGACAGTGTGTCCCCCGACCCGTGGAAGCGGGACG < 41bp 1 0.0886385723880098 1 0.276725769042969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352593 chr6:168352586 nonsynonymous SNV 0.240 4 14 hm5C_associated_SNPs_15492 0 0 1 0 0 unknown 1 0.50023164391608 1 0.999536712167841 hm5C_site_17138 DeepMRMD:1;iRNA_m5C:0.999536712167841 17139 chr3 193335031 193335031 1 + G A BLCA 193335015 + 193334995 193335035 41 AGAAGACCTTGTAAAGTTAGCACCAGACTTTGACAAGATTG AGAAGACCTTGTAAAGTTAGCACCAGACTTTGACAAAATTG < 41bp 1 0.640038866171369 1 0.225530505180359 experiment 0.719922267657263 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193335015 chr3:193335031 synonymous SNV . 0 37 hm5C_associated_SNPs_15493 0 0 0 0 2 Nucleus 1 0.500231645859306 1 0.999536708281388 hm5C_site_17139 DeepMRMD:1;iRNA_m5C:0.999536708281388 17140 chr19 41925047 41925047 1 + G A BLCA 41925063 + 41925043 41925083 41 TGCTGATGTATCGGGACTACCCCCTGGAACTATTCATGGCC TGCTAATGTATCGGGACTACCCCCTGGAACTATTCATGGCC < 41bp 1 0.301412224698267 1 0.268359512090683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41925063 chr19:41925047 synonymous SNV . 0 5 hm5C_associated_SNPs_15495 0 0 1 0 1 Cytosol 1 0.500231643888134 1 0.999536712223732 hm5C_site_17140 DeepMRMD:1;iRNA_m5C:0.999536712223732 17141 chr19 41925047 41925047 1 + G A BLCA 41925064 + 41925044 41925084 41 GCTGATGTATCGGGACTACCCCCTGGAACTATTCATGGCCC GCTAATGTATCGGGACTACCCCCTGGAACTATTCATGGCCC < 41bp 1 0.476484652577377 1 0.450756669044495 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41925064 chr19:41925047 synonymous SNV . 0 4 hm5C_associated_SNPs_15496 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17141 DeepMRMD:1;iRNA_m5C:0.999536712157815 17142 chr14 104037964 104037964 1 + C G BLCA 104037976 + 104037956 104037996 41 AAAGGTCTCAAGATTCTGCCCTCCAAGAAAGTCTTGCCATG AAAGGTCTGAAGATTCTGCCCTCCAAGAAAGTCTTGCCATG < 41bp 1 0.686436912309797 1 0.961793899536133 experiment 0.627126175380406 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74773;RNA-BisSeq;Huh7;Control APOPT1 ENSG00000256053;ENSG00000256500 CDS Human other chr14:104037976 chr14:104037964 stopgain 0.890 1 9 hm5C_associated_SNPs_15497 0 0 1 0 1 Ribosome 1 0.500231643920728 0.0764122009277339 0.999536712158545 hm5C_site_17142 DeepMRMD:0.0764122009277339;iRNA_m5C:0.999536712158545 17143 chr19 8503337 8503337 1 + G A BLCA 8503319 + 8503299 8503339 41 TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCGCCTGAA TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCGCCTAAA < 41bp 1 0.417654654567696 1 0.0757662951946259 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503319 chr19:8503337 synonymous SNV . 0 39 hm5C_associated_SNPs_15498 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17143 DeepMRMD:1;iRNA_m5C:0.999536712157815 17144 chr5 154330479 154330479 1 + G C BLCA 154330472 + 154330452 154330492 41 AAATTGTTTATCCTCCACAACTGCCTGGAGAACCTCGGAGA AAATTGTTTATCCTCCACAACTGCCTGCAGAACCTCGGAGA < 41bp 1 0.441975385827165 1 0.0586500763893127 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154330472 chr5:154330479 nonsynonymous SNV 0.998 1 28 hm5C_associated_SNPs_15499 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17144 DeepMRMD:1;iRNA_m5C:0.999536712157815 17145 chr11 65268881 65268881 1 + G A BLCA 65268891 + 65268871 65268911 41 GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTA GAGGTCTGTGAAAGAGATGTCCATTGGAGAAATGGCTGGTA < 41bp 1 0.158764764016538 1 0.256917715072632 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268891 chr11:65268881 . . 0 11 hm5C_associated_SNPs_15500 0 0 1 2 0 unknown 1 0.500231643376608 1 0.999536713246783 hm5C_site_17145 DeepMRMD:1;iRNA_m5C:0.999536713246783 17146 chr11 65268884 65268884 1 + G A BLCA 65268891 + 65268871 65268911 41 GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTA GAGGTCTGTGGAAAAGATGTCCATTGGAGAAATGGCTGGTA < 41bp 1 0.14560429484881 1 0.265716135501862 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268891 chr11:65268884 . . 0 14 hm5C_associated_SNPs_15501 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17146 DeepMRMD:1;iRNA_m5C:0.999536712157815 17147 chr2 127453717 127453717 1 + G A BLCA 127453726 + 127453706 127453746 41 GTACTTTATTTGAGGGACAACAGACTTCACTTCCCTGAATG GTACTTTATTTAAGGGACAACAGACTTCACTTCCCTGAATG < 41bp 1 0.406274423620833 1 0.723780632019043 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GYPC ENSG00000136732 CDS Human protein_coding chr2:127453726 chr2:127453717 synonymous SNV . 0 12 hm5C_associated_SNPs_15502 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643924972 0.552438735961914 0.999536712150055 hm5C_site_17147 DeepMRMD:0.552438735961914;iRNA_m5C:0.999536712150055 17148 chr17 38512341 38512341 1 + G A BLCA 38512361 + 38512341 38512381 41 GAGGGCCTGGACACTCTGAGCGGACAGCCGGGGGGTGGGGG AAGGGCCTGGACACTCTGAGCGGACAGCCGGGGGGTGGGGG < 41bp 1 0.32383899224941 1 0.703026175498962 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RARA ENSG00000131759 CDS Human protein_coding chr17:38512361 chr17:38512341 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_15503 0 0 1 0 1 chromatin 1 0.500231643921092 0.593947649002076 0.999536712157815 hm5C_site_17148 DeepMRMD:0.593947649002076;iRNA_m5C:0.999536712157815 17149 chr11 65269080 65269080 1 + G A BLCA 65269082 + 65269062 65269102 41 AGATGCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAG AGATGCTATAGTACTATTAACAAACTGGGTTAGAGAAGGAG < 41bp 1 0.167589250699627 1 0.441261559724808 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269082 chr11:65269080 . . 0 19 hm5C_associated_SNPs_15504 0 0 1 1 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_17149 DeepMRMD:1;iRNA_m5C:0.999536712157815 17150 chr17 4905849 4905849 1 + C T BLCA 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCTTGGG < 41bp 1 0.483443248854293 1 0.583019435405731 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905849 synonymous SNV . 0 37 hm5C_associated_SNPs_15506 0 0 1 0 2 Ribosome 1 0.500231643921092 0.833961129188538 0.999536712157815 hm5C_site_17150 DeepMRMD:0.833961129188538;iRNA_m5C:0.999536712157815 17151 chr13 103298650 103298650 1 + G A BLCA 103298646 + 103298626 103298666 41 GTAGTTTCCTCATTACAGCCCAGTGAGTGCAAAAACAAAAC GTAGTTTCCTCATTACAGCCCAGTAAGTGCAAAAACAAAAC < 41bp 1 0.175621416866025 1 0.133042424917221 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103298646 chr13:103298650 synonymous SNV . 0 25 hm5C_associated_SNPs_15507 0 0 1 0 2 Nucleus 1 0.500231498152065 1 0.999537003695871 hm5C_site_17151 DeepMRMD:1;iRNA_m5C:0.999537003695871 17152 chr11 65268871 65268871 1 + G A BLCA 65268891 + 65268871 65268911 41 GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTA AAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTA < 41bp 1 0.165851708846262 1 0.381710886955261 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268891 chr11:65268871 . . 0 1 hm5C_associated_SNPs_15508 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17152 DeepMRMD:1;iRNA_m5C:0.999536712157815 17153 chr3 186302239 186302239 1 + G C BLCA 186302256 + 186302236 186302276 41 TAAGATCACCAGGCCAGGAGCGAAGCTATGGAAGAAAGGGG TAACATCACCAGGCCAGGAGCGAAGCTATGGAAGAAAGGGG < 41bp 1 0.307035046579803 1 0.524138033390045 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302256 chr3:186302239 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_15510 0 0 1 0 1 Ribosome 1 0.500231643921092 0.95172393321991 0.999536712157815 hm5C_site_17153 DeepMRMD:0.95172393321991;iRNA_m5C:0.999536712157815 17154 chr11 64950979 64950979 1 + C T BLCA 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTTACTCTCAA < 41bp 1 0.223468388105911 1 0.149765521287918 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950979 synonymous SNV . 0 33 hm5C_associated_SNPs_15511 0 0 1 0 2 Ribosome 1 0.500231625299574 1 0.999536749400853 hm5C_site_17154 DeepMRMD:1;iRNA_m5C:0.999536749400853 17155 chr19 2794815 2794815 1 + C T BLCA 2794811 + 2794791 2794831 41 CATGTTTCCCCCTCCAAGGACATCCGGACAGCCAGCACAGA CATGTTTCCCCCTCCAAGGACATCTGGACAGCCAGCACAGA < 41bp 1 0.0783998738213751 1 0.414427161216736 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THOP1 ENSG00000172009 CDS Human protein_coding chr19:2794811 chr19:2794815 nonsynonymous SNV 0.030 4 25 hm5C_associated_SNPs_15512 0 0 1 0 2 Ribosome 1 0.500231643906736 1 0.999536712186528 hm5C_site_17155 DeepMRMD:1;iRNA_m5C:0.999536712186528 17156 chr11 67052440 67052440 1 + G A BLCA 67052439 + 67052419 67052459 41 AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG AACCGCCTCGAGTGGCGGGGCAAGGGCGAGGCCCCGGTAAG < 41bp 1 0.624000861558637 1 0.849875092506409 experiment 0.751998276882726 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052439 chr11:67052440 nonsynonymous SNV 0.970 1 22 hm5C_associated_SNPs_15514 0 0 1 0 1 chromatin 1 0.500231643921092 0.300249814987182 0.999536712157815 hm5C_site_17156 DeepMRMD:0.300249814987182;iRNA_m5C:0.999536712157815 17157 chr11 67052440 67052440 1 + G A BLCA 67052450 + 67052430 67052470 41 GTGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG GTGGCGGGGCAAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG < 41bp 1 0.45895777666733 1 0.688251197338104 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052450 chr11:67052440 nonsynonymous SNV 0.970 1 11 hm5C_associated_SNPs_15515 0 0 1 0 1 chromatin 1 0.500231643921111 0.623497605323792 0.999536712157778 hm5C_site_17157 DeepMRMD:0.623497605323792;iRNA_m5C:0.999536712157778 17158 chr11 67052440 67052440 1 + G A BLCA 67052451 + 67052431 67052471 41 TGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGG TGGCGGGGCAAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGG < 41bp 1 0.648046920984097 1 0.737037420272827 experiment 0.703906158031806 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052451 chr11:67052440 nonsynonymous SNV 0.970 1 10 hm5C_associated_SNPs_15516 0 0 1 0 1 chromatin 1 0.500231643921092 0.525925159454346 0.999536712157816 hm5C_site_17158 DeepMRMD:0.525925159454346;iRNA_m5C:0.999536712157816 17159 chr11 67052440 67052440 1 + G A BLCA 67052452 + 67052432 67052472 41 GGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG GGCGGGGCAAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG < 41bp 1 0.415552290864663 1 0.623901665210724 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052452 chr11:67052440 nonsynonymous SNV 0.970 1 9 hm5C_associated_SNPs_15517 0 0 1 0 1 chromatin 1 0.500231643921091 0.752196669578552 0.999536712157818 hm5C_site_17159 DeepMRMD:0.752196669578552;iRNA_m5C:0.999536712157818 17160 chr16 70164432 70164432 1 + C G BLCA 70164445 + 70164425 70164465 41 ATTTTGTCAACTGTGCTGGCCAGGTAGGTCAGCACCAACAC ATTTTGTGAACTGTGCTGGCCAGGTAGGTCAGCACCAACAC < 41bp 1 0.435065877630819 1 0.408545196056366 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70164445 chr16:70164432 synonymous SNV . 0 8 hm5C_associated_SNPs_15519 0 0 0 0 1 Nucleus 1 0.500866905393616 1 0.998266189212767 hm5C_site_17160 DeepMRMD:1;iRNA_m5C:0.998266189212767 17161 chr20 42680115 42680115 1 + C T BLCA 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATCACCGCTGGGGAGCAAGTCAGCGACCCCCTCTCC < 41bp 1 0.442479969795431 1 0.280876934528351 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680115 nonsynonymous SNV 0.718 4 14 hm5C_associated_SNPs_15520 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17161 DeepMRMD:1;iRNA_m5C:0.999536712157815 17162 chr12 104340666 104340666 1 + G A BLCA 104340684 + 104340664 104340704 41 GAGATAGAATAGAAAGAATGCTTCGCCTCAGTTTGAACATT GAAATAGAATAGAAAGAATGCTTCGCCTCAGTTTGAACATT < 41bp 1 0.170977689419559 1 0.0928095877170563 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340684 chr12:104340666 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_15521 0 0 1 0 1 Nucleus 1 0.500231643921194 1 0.999536712157613 hm5C_site_17162 DeepMRMD:1;iRNA_m5C:0.999536712157613 17163 chr15 78841248 78841248 1 + G A BLCA 78841245 + 78841225 78841265 41 AAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAAGAA AAGAAGAAGCCAAAGCTGAGCGTAAGAAGAAAGAAAAAGAA < 41bp 1 0.471634093732795 1 0.488796800374985 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78841245 chr15:78841248 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_15522 0 0 1 0 0 Ribosome 1 0.50029697155797 1 0.999406056884059 hm5C_site_17163 DeepMRMD:1;iRNA_m5C:0.999406056884059 17164 chr5 86645051 86645051 1 + C G BLCA 86645061 + 86645041 86645081 41 CTGCAGTTTTCTTGTGAGGCCCTCAGATAATACTCCTGGCG CTGCAGTTTTGTTGTGAGGCCCTCAGATAATACTCCTGGCG < 41bp 1 0.157257564388578 1 0.0979334712028503 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86645061 chr5:86645051 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_15523 0 0 1 0 1 Nucleus 1 0.500231643941296 1 0.999536712117408 hm5C_site_17164 DeepMRMD:1;iRNA_m5C:0.999536712117408 17165 chr17 57918661 57918661 1 + G A BLCA 57918672 + 57918652 57918692 41 TTGACTGTTGAATCTCATGGCAACACCAGTCGATGGGCTGT TTGACTGTTAAATCTCATGGCAACACCAGTCGATGGGCTGT < 41bp 1 0.593473375049586 1 0.151158183813095 experiment 0.813053249900827 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control MIR21 ENSG00000199004 ncRNA_exonic Human other chr17:57918672 chr17:57918661 . . 0 10 hm5C_associated_SNPs_15524 0 0 1 0 0 unknown 1 0.500231643921384 1 0.999536712157232 hm5C_site_17165 DeepMRMD:1;iRNA_m5C:0.999536712157232 17166 chr2 27662642 27662642 1 + C G BLCA 27662638 + 27662618 27662658 41 TGTTTCCTTTTCTAGGAGTTCATTCAAAAGTGCCTGCAGTC TGTTTCCTTTTCTAGGAGTTCATTGAAAAGTGCCTGCAGTC < 41bp 1 0.164463312490795 1 0.0877741575241089 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27662638 chr2:27662642 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_15526 0 0 1 0 1 Cytosol 1 0.500231643921121 1 0.999536712157759 hm5C_site_17166 DeepMRMD:1;iRNA_m5C:0.999536712157759 17167 chr9 134067676 134067676 1 + C T BLCA 134067670 + 134067650 134067690 41 CAGCAAGCCTTTCTCATTTTCTCCATCAGGGTCAGTAATGA CAGCAAGCCTTTCTCATTTTCTCCATTAGGGTCAGTAATGA < 41bp 1 0.582328898302745 1 0.969248294830322 experiment 0.835342203394509 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134067670 chr9:134067676 nonsynonymous SNV 0.950 0 27 hm5C_associated_SNPs_15527 0 0 1 0 1 Cytosol 1 0.500231643921092 0.0615034103393559 0.999536712157815 hm5C_site_17167 DeepMRMD:0.0615034103393559;iRNA_m5C:0.999536712157815 17168 chr17 54912463 54912463 1 + G C BLCA 54912447 + 54912427 54912467 41 GGGCTCCGCGTGGACGAGGGCTGCCTCAGGAAGGCCGACAA GGGCTCCGCGTGGACGAGGGCTGCCTCAGGAAGGCCCACAA < 41bp 1 0.651458882063257 1 0.229596585035324 experiment 0.697082235873486 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54912447 chr17:54912463 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_15528 0 0 1 0 0 Ribosome 1 0.500231697599985 1 0.99953660480003 hm5C_site_17168 DeepMRMD:1;iRNA_m5C:0.99953660480003 17169 chr17 78704387 78704387 1 + A G BLCA 78704396 + 78704376 78704416 41 TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAGC TCCCTCTGTCCGTATATGACCTGCAGACGTGGATGGGCAGC < 41bp 1 0.525557317707267 1 0.18274262547493 experiment 0.948885364585466 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPTOR ENSG00000141564 CDS Human protein_coding chr17:78704396 chr17:78704387 nonsynonymous SNV 0.997 0 12 hm5C_associated_SNPs_15529 0 0 1 0 1 Nucleus 1 0.500234256877813 1 0.999531486244374 hm5C_site_17169 DeepMRMD:1;iRNA_m5C:0.999531486244374 17170 chr17 64961105 64961105 1 + C T BLCA 64961096 + 64961076 64961116 41 GCCTTCGCCGCCTTCTCGCTCATGGCCATCGCCATCGGCAC GCCTTCGCCGCCTTCTCGCTCATGGCCATTGCCATCGGCAC < 41bp 1 0.560710237566283 1 0.36622428894043 experiment 0.878579524867435 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CACNG4 ENSG00000075461 CDS Human protein_coding chr17:64961096 chr17:64961105 synonymous SNV . 0 30 hm5C_associated_SNPs_15530 0 0 0 0 0 Endoplasmic reticulum 1 0.50023157442438 1 0.999536851151239 hm5C_site_17170 DeepMRMD:1;iRNA_m5C:0.999536851151239 17171 chr3 57543322 57543322 1 + G C BLCA 57543327 + 57543307 57543347 41 TTCTACGAAGCCCTCGAGTCCGACCCACTTCACAAAGAACT TTCTACGAAGCCCTCCAGTCCGACCCACTTCACAAAGAACT < 41bp 1 0.107641685600583 1 0.101626485586166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE12 ENSG00000174840 CDS Human protein_coding chr3:57543327 chr3:57543322 nonsynonymous SNV 0.614 1 16 hm5C_associated_SNPs_15531 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164391521 1 0.99953671216958 hm5C_site_17171 DeepMRMD:1;iRNA_m5C:0.99953671216958 17172 chr1 12009946 12009946 1 + C T BLCA 12009955 + 12009935 12009975 41 GAGGATCTGGTCATTCTCTTCGCAGACAGGTAGGTGGGTCA GAGGATCTGGTTATTCTCTTCGCAGACAGGTAGGTGGGTCA < 41bp 1 0.495380196274684 1 0.805894494056702 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12009955 chr1:12009946 synonymous SNV . 0 12 hm5C_associated_SNPs_15532 0 0 1 0 1 Nucleus 1 0.500231643921994 0.388211011886596 0.999536712156012 hm5C_site_17172 DeepMRMD:0.388211011886596;iRNA_m5C:0.999536712156012 17173 chr12 49888605 49888605 1 + C G BLCA 49888623 + 49888603 49888643 41 TTCAAGAGGAACAGTCTGCGCCTTCCTCAGAGAAAGGTGGT TTGAAGAGGAACAGTCTGCGCCTTCCTCAGAGAAAGGTGGT < 41bp 1 0.0127921312615914 1 0.140361249446869 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATS2 ENSG00000123352 CDS Human protein_coding chr12:49888623 chr12:49888605 nonsynonymous SNV 0.822 0 3 hm5C_associated_SNPs_15534 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17173 DeepMRMD:1;iRNA_m5C:0.999536712157815 17174 chr17 60769597 60769597 1 + C T BLCA 60769607 + 60769587 60769627 41 GGCAGCGCTTCCAGAGAACCCAGCGGCCCTGGTGGTGGTGC GGCAGCGCTTTCAGAGAACCCAGCGGCCCTGGTGGTGGTGC < 41bp 1 0.66379628548339 1 0.662897109985352 experiment 0.672407429033219 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60769607 chr17:60769597 nonsynonymous SNV 0.611 0 11 hm5C_associated_SNPs_15535 0 0 0 0 1 Cytosol 1 0.500231643604494 0.674205780029296 0.999536712791013 hm5C_site_17174 DeepMRMD:0.674205780029296;iRNA_m5C:0.999536712791013 17175 chr17 45773487 45773487 1 + C T BLCA 45773473 + 45773453 45773493 41 GTGTGGGCCGCGGCCCGGCCCTCACCATGGAGTCCATGTTC GTGTGGGCCGCGGCCCGGCCCTCACCATGGAGTCTATGTTC < 41bp 1 0.452742828884241 1 0.0441793203353882 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBKBP1 ENSG00000198933 CDS Human protein_coding chr17:45773473 chr17:45773487 synonymous SNV . 0 35 hm5C_associated_SNPs_15536 0 0 0 0 0 Cytosol 1 0.500294254458464 1 0.999411491083072 hm5C_site_17175 DeepMRMD:1;iRNA_m5C:0.999411491083072 17176 chr7 98563392 98563392 1 + G A BLCA 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACGCGCCTGGCAGTGATGAGCATGGAGATGCGAAAGAACTT < 41bp 1 0.182403851423112 1 0.551432907581329 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563392 synonymous SNV . 0 33 hm5C_associated_SNPs_15537 0 0 1 0 1 Nucleus 1 0.500231643918406 0.897134184837342 0.999536712163188 hm5C_site_17176 DeepMRMD:0.897134184837342;iRNA_m5C:0.999536712163188 17177 chr5 14498739 14498739 1 + G C BLCA 14498746 + 14498726 14498766 41 CGTCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG CGTCGGCCAGCCTCAGGGTCCTAGGTAAGCACCGTGCAACG < 41bp 1 0.390747311952633 1 0.166970580816269 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14498746 chr5:14498739 synonymous SNV . 0 14 hm5C_associated_SNPs_15538 0 0 1 0 1 Nucleus 1 0.500231643921101 1 0.999536712157798 hm5C_site_17177 DeepMRMD:1;iRNA_m5C:0.999536712157798 17178 chr14 73637515 73637515 1 + G C BLCA 73637529 + 73637509 73637549 41 ACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTT ACAATACAGAACGGCAGGAGCACAACGACAGACGGAGCCTT < 41bp 1 0.639249167422172 1 0.27521887421608 experiment 0.721501665155656 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637529 chr14:73637515 nonsynonymous SNV 0.557 1 7 hm5C_associated_SNPs_15540 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17178 DeepMRMD:1;iRNA_m5C:0.999536712157815 17179 chr14 73637515 73637515 1 + G C BLCA 73637531 + 73637511 73637551 41 AATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG AATACAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG < 41bp 1 0.584838570105304 1 0.195853888988495 experiment 0.830322859789393 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637531 chr14:73637515 nonsynonymous SNV 0.557 1 5 hm5C_associated_SNPs_15541 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17179 DeepMRMD:1;iRNA_m5C:0.999536712157815 17180 chr1 35824634 35824634 1 + C T BLCA 35824625 + 35824605 35824645 41 AATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATG AATGCCGAATCAAACAGGATCTGAAAATTTATTGCTGGATG < 41bp 1 0.406523727058917 1 0.353192090988159 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35824625 chr1:35824634 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_15542 0 0 1 0 0 Cytosol 1 0.50023164391992 1 0.999536712160159 hm5C_site_17180 DeepMRMD:1;iRNA_m5C:0.999536712160159 17181 chr22 32174116 32174116 1 + G A BLCA 32174133 + 32174113 32174153 41 AATGAGAAGGTCATGTGTGGCTACATCAGTGAAGATACCAG AATAAGAAGGTCATGTGTGGCTACATCAGTGAAGATACCAG < 41bp 1 0.490748745380194 1 0.838034749031067 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32174133 chr22:32174116 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_15543 0 0 1 0 1 chromatin 1 0.500231643919715 0.323930501937866 0.99953671216057 hm5C_site_17181 DeepMRMD:0.323930501937866;iRNA_m5C:0.99953671216057 17182 chr17 37618889 37618889 1 + G A BLCA 37618875 + 37618855 37618895 41 CAAGCTCCACAAGGAGAAGACCAGGAAAGAACGGGAGCTGA CAAGCTCCACAAGGAGAAGACCAGGAAAGAACGGAAGCTGA < 41bp 1 0.362977529681704 1 0.304098010063171 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37618875 chr17:37618889 nonsynonymous SNV 0.838 4 35 hm5C_associated_SNPs_15544 0 0 1 0 0 Nucleus 1 0.500234857955545 1 0.999530284088911 hm5C_site_17182 DeepMRMD:1;iRNA_m5C:0.999530284088911 17183 chr11 68363617 68363617 1 + G A BLCA 68363598 + 68363578 68363618 41 GACAGTGAGGAAAGTACAGACTCTGAAGAAGAAGATGGAGC GACAGTGAGGAAAGTACAGACTCTGAAGAAGAAGATGGAAC < 41bp 1 0.403468106643184 1 0.443053632974625 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363598 chr11:68363617 nonsynonymous SNV 0.996 0 40 hm5C_associated_SNPs_15545 0 0 1 0 2 Nucleus 1 0.500233128832382 1 0.999533742335235 hm5C_site_17183 DeepMRMD:1;iRNA_m5C:0.999533742335235 17184 chr19 10561309 10561309 1 + C T BLCA 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCGGCCCCACCCCTGTTTGCAAGGCCA < 41bp 1 0.0296905391075567 1 0.20378789305687 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561309 synonymous SNV . 0 31 hm5C_associated_SNPs_15546 0 0 0 0 2 chromatin 1 0.500231643921118 1 0.999536712157763 hm5C_site_17184 DeepMRMD:1;iRNA_m5C:0.999536712157763 17185 chr2 113315529 113315529 1 + G C BLCA 113315541 + 113315521 113315561 41 TAGCTTTTGATAAGAAGGCTCAGAAGACCAGTGTTTCCATG TAGCTTTTCATAAGAAGGCTCAGAAGACCAGTGTTTCCATG < 41bp 1 0.407748902324987 1 0.319472014904022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113315541 chr2:113315529 nonsynonymous SNV 0.989 2 9 hm5C_associated_SNPs_15547 0 0 1 0 1 Nucleus 1 0.500231643921365 1 0.99953671215727 hm5C_site_17185 DeepMRMD:1;iRNA_m5C:0.99953671215727 17186 chr10 5955750 5955750 1 + A T BLCA 5955758 + 5955738 5955778 41 TATCTTCAGGAGAATTCCTGCACTCAGGCCACAAAAGTTAA TATCTTCAGGAGTATTCCTGCACTCAGGCCACAAAAGTTAA < 41bp 1 0.0685376347393108 1 0.0523222982883453 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5955758 chr10:5955750 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_15548 0 0 1 0 1 Ribosome 1 0.500231624644389 1 0.999536750711222 hm5C_site_17186 DeepMRMD:1;iRNA_m5C:0.999536750711222 17187 chr11 57373936 57373936 1 + C T BLCA 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAAGAAAACCAGAATGGAACCCTTTCACTTTAAAAACTCA < 41bp 1 0.024782999676061 1 0.0519026517868042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373936 synonymous SNV . 0 32 hm5C_associated_SNPs_15549 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17187 DeepMRMD:1;iRNA_m5C:0.999536712157815 17188 chr11 57373936 57373936 1 + C T BLCA 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAAGAAAACCAGAATGGAACCCTTTCACTTTAAAAACTCAG < 41bp 1 0.00939662383726225 1 0.113619416952133 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373936 synonymous SNV . 0 31 hm5C_associated_SNPs_15550 0 0 0 0 2 Endoplasmic reticulum 1 0.500231754309217 1 0.999536491381566 hm5C_site_17188 DeepMRMD:1;iRNA_m5C:0.999536491381566 17189 chr11 57373936 57373936 1 + C T BLCA 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AAGAAAACCAGAATGGAACCCTTTCACTTTAAAAACTCAGT < 41bp 1 0.0124702206213992 1 0.0577499866485596 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373936 synonymous SNV . 0 30 hm5C_associated_SNPs_15551 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_17189 DeepMRMD:1;iRNA_m5C:0.999536712157814 17190 chr11 57373936 57373936 1 + C T BLCA 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAGAATGGAACCCTTTCACTTTAAAAACTCAGTTATAAA < 41bp 1 0.27100313328773 1 0.291001856327057 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373936 synonymous SNV . 0 24 hm5C_associated_SNPs_15552 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643924922 1 0.999536712150157 hm5C_site_17190 DeepMRMD:1;iRNA_m5C:0.999536712150157 17191 chr21 37617591 37617591 1 + G C BLCA 37617607 + 37617587 37617627 41 CCCGGACAGCAGCGAGCACACCGAGTCTGCAGATACAAGCT CCCGCACAGCAGCGAGCACACCGAGTCTGCAGATACAAGCT < 41bp 1 0.452061116543526 1 0.147804886102676 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOPEY2 ENSG00000142197 CDS Human protein_coding chr21:37617607 chr21:37617591 nonsynonymous SNV 0.497 2 5 hm5C_associated_SNPs_15553 0 0 0 0 0 cytosol 1 0.500232672057023 1 0.999534655885955 hm5C_site_17191 DeepMRMD:1;iRNA_m5C:0.999534655885955 17192 chr7 114655760 114655760 1 + T C BLCA 114655752 + 114655732 114655772 41 GAAAATGAAGATTGTTGTGTCCACTGTATCCTGGCTTGCTT GAAAATGAAGATTGTTGTGTCCACTGTACCCTGGCTTGCTT < 41bp 1 0.199328352580579 1 0.0478044748306274 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655752 chr7:114655760 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_15554 0 0 1 0 1 Cytosol 1 0.500237814570597 1 0.999524370858807 hm5C_site_17192 DeepMRMD:1;iRNA_m5C:0.999524370858807 17193 chr1 160323984 160323984 1 + C T BLCA 160323975 + 160323955 160323995 41 TGCTGTCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCC TGCTGTCATCCTCAGGAGGCCAAATCAGTTCCAGCCTCTCC < 41bp 1 0.231597617211843 1 0.11955389380455 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160323975 chr1:160323984 nonsynonymous SNV 0.992 1 30 hm5C_associated_SNPs_15556 0 0 1 0 2 Endoplasmic reticulum 1 0.500231752301628 1 0.999536495396745 hm5C_site_17193 DeepMRMD:1;iRNA_m5C:0.999536495396745 17194 chr2 64112904 64112904 1 + G C BLCA 64112920 + 64112900 64112940 41 CATAGATAATCTGGGTGCCACAGTGGATCTGTATATTCTTA CATACATAATCTGGGTGCCACAGTGGATCTGTATATTCTTA < 41bp 1 0.341590785138697 1 0.674375236034393 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UGP2 ENSG00000169764 CDS Human protein_coding chr2:64112920 chr2:64112904 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_15557 0 0 1 0 0 Ribosome 1 0.500231619099429 0.651249527931214 0.999536761801143 hm5C_site_17194 DeepMRMD:0.651249527931214;iRNA_m5C:0.999536761801143 17195 chr3 179291249 179291249 1 + G C BLCA 179291256 + 179291236 179291276 41 TGTTCTCATGTCAGAGGCACCGGTGAGATAAAGATTTTCTT TGTTCTCATGTCACAGGCACCGGTGAGATAAAGATTTTCTT < 41bp 1 0.343035885830973 1 0.259391844272614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179291256 chr3:179291249 nonsynonymous SNV 0.996 5 14 hm5C_associated_SNPs_15558 0 0 0 0 2 Ribosome 1 0.500235279516851 1 0.999529440966297 hm5C_site_17195 DeepMRMD:1;iRNA_m5C:0.999529440966297 17196 chr9 110086268 110086268 1 + G C BLCA 110086266 + 110086246 110086286 41 TGCTTCCAGCGTTACTACAGCAGATAGGTCGAGAGAATCCT TGCTTCCAGCGTTACTACAGCACATAGGTCGAGAGAATCCT < 41bp 1 0.211119535631809 1 0.0608995258808136 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110086266 chr9:110086268 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_15559 0 0 1 0 2 Ribosome 1 0.500231689067295 1 0.99953662186541 hm5C_site_17196 DeepMRMD:1;iRNA_m5C:0.99953662186541 17197 chr12 53858606 53858606 1 + C T BLCA 53858610 + 53858590 53858630 41 CCCCGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCT CCCCGTCCATGTGCCTTAACCCTGACCTGGAGGGACCACCT < 41bp 1 0.654134391374141 1 0.171458125114441 experiment 0.691731217251717 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53858610 chr12:53858606 synonymous SNV . 0 17 hm5C_associated_SNPs_15560 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17197 DeepMRMD:1;iRNA_m5C:0.999536712157815 17198 chr11 67052451 67052451 1 + C T BLCA 67052439 + 67052419 67052459 41 AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCTCCGGTAAG < 41bp 1 0.670555433732721 1 0.80268657207489 experiment 0.658889132534558 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052439 chr11:67052451 synonymous SNV . 0 33 hm5C_associated_SNPs_15563 0 0 1 0 1 chromatin 1 0.500231643921092 0.39462685585022 0.999536712157815 hm5C_site_17198 DeepMRMD:0.39462685585022;iRNA_m5C:0.999536712157815 17199 chr11 67052451 67052451 1 + C T BLCA 67052452 + 67052432 67052472 41 GGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG GGCGGGGCGAGGGCGAGGCTCCGGTAAGGAGCCCGTGCGGG < 41bp 1 0.556236450795583 1 0.640161693096161 experiment 0.887527098408834 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052452 chr11:67052451 synonymous SNV . 0 20 hm5C_associated_SNPs_15565 0 0 1 0 1 chromatin 1 0.500231643921127 0.719676613807678 0.999536712157747 hm5C_site_17199 DeepMRMD:0.719676613807678;iRNA_m5C:0.999536712157747 17200 chr4 1730407 1730407 1 + C T BLCA 1730416 + 1730396 1730436 41 AAGTCTGGTTGCAGTGAGGCCCAGCCCCCAGAAAGCCCTGA AAGTCTGGTTGTAGTGAGGCCCAGCCCCCAGAAAGCCCTGA < 41bp 1 0.0779364396215219 1 0.22842401266098 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1730416 chr4:1730407 synonymous SNV . 0 12 hm5C_associated_SNPs_15567 0 0 1 0 0 Cytosol 1 0.500231643812189 1 0.999536712375622 hm5C_site_17200 DeepMRMD:1;iRNA_m5C:0.999536712375622 17201 chr11 66812099 66812099 1 + C T BLCA 66812087 + 66812067 66812107 41 GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCT GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTTAGCTACCT < 41bp 1 0.290457425214759 1 0.229694306850433 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYT12 ENSG00000173227 CDS Human protein_coding chr11:66812087 chr11:66812099 synonymous SNV . 0 33 hm5C_associated_SNPs_15568 0 0 0 0 2 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17201 DeepMRMD:1;iRNA_m5C:0.999536712157815 17202 chr19 10572652 10572652 1 + G C BLCA 10572643 + 10572623 10572663 41 AAGTGACCAGCTCAGGGGTCCTCCTGCTAGATAACTACTCC AAGTGACCAGCTCAGGGGTCCTCCTGCTACATAACTACTCC < 41bp 1 0.163404999865194 1 0.168900907039642 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10572643 chr19:10572652 nonsynonymous SNV 0.989 4 30 hm5C_associated_SNPs_15569 0 0 0 0 2 chromatin 1 0.50023164392713 1 0.99953671214574 hm5C_site_17202 DeepMRMD:1;iRNA_m5C:0.99953671214574 17203 chr6 20402595 20402595 1 + C T BLCA 20402600 + 20402580 20402620 41 AGCCAGCCCCGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCG AGCCAGCCCCGGCTTTGCCGCCGCCGCCGCCGCTGCCGCCG < 41bp 1 0.384363392012417 1 0.579161584377289 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402600 chr6:20402595 synonymous SNV . 0 16 hm5C_associated_SNPs_15570 0 0 1 0 0 Cytosol 1 0.500231643920342 0.841676831245422 0.999536712159316 hm5C_site_17203 DeepMRMD:0.841676831245422;iRNA_m5C:0.999536712159316 17204 chr6 20402595 20402595 1 + C T BLCA 20402603 + 20402583 20402623 41 CAGCCCCGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCC CAGCCCCGGCTTTGCCGCCGCCGCCGCCGCTGCCGCCGCCC < 41bp 1 0.290506904843199 1 0.322458684444427 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402603 chr6:20402595 synonymous SNV . 0 13 hm5C_associated_SNPs_15572 0 0 1 0 0 Cytosol 1 0.50023164392257 1 0.999536712154859 hm5C_site_17204 DeepMRMD:1;iRNA_m5C:0.999536712154859 17205 chr6 20402595 20402595 1 + C T BLCA 20402606 + 20402586 20402626 41 CCCCGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGG CCCCGGCTTTGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGG < 41bp 1 0.419917749222878 1 0.698865413665771 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402606 chr6:20402595 synonymous SNV . 0 10 hm5C_associated_SNPs_15574 0 0 1 0 0 Cytosol 1 0.50023164391652 0.602269172668458 0.999536712166959 hm5C_site_17205 DeepMRMD:0.602269172668458;iRNA_m5C:0.999536712166959 17206 chr6 20402595 20402595 1 + C T BLCA 20402609 + 20402589 20402629 41 CGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCG CGGCTTTGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCG < 41bp 1 0.416498782488202 1 0.619051337242126 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402609 chr6:20402595 synonymous SNV . 0 7 hm5C_associated_SNPs_15575 0 0 1 0 0 Cytosol 1 0.500231643925843 0.761897325515748 0.999536712148313 hm5C_site_17206 DeepMRMD:0.761897325515748;iRNA_m5C:0.999536712148313 17207 chr6 20402595 20402595 1 + C T BLCA 20402610 + 20402590 20402630 41 GGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGC GGCTTTGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGC < 41bp 1 0.581265894994887 1 0.700025618076324 experiment 0.837468210010227 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402610 chr6:20402595 synonymous SNV . 0 6 hm5C_associated_SNPs_15576 0 0 1 0 0 Cytosol 1 0.500231643921092 0.599948763847352 0.999536712157815 hm5C_site_17207 DeepMRMD:0.599948763847352;iRNA_m5C:0.999536712157815 17208 chr6 20402595 20402595 1 + C T BLCA 20402612 + 20402592 20402632 41 CTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGCGT CTTTGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGCGT < 41bp 1 0.620180556015338 1 0.433913975954056 experiment 0.759638887969325 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402612 chr6:20402595 synonymous SNV . 0 4 hm5C_associated_SNPs_15577 0 0 1 0 0 Cytosol 1 0.500231643969815 1 0.99953671206037 hm5C_site_17208 DeepMRMD:1;iRNA_m5C:0.99953671206037 17209 chr6 20402595 20402595 1 + C T BLCA 20402615 + 20402595 20402635 41 CGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGCGTACA TGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGCGTACA < 41bp 1 0.269221316821833 1 0.638848066329956 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402615 chr6:20402595 synonymous SNV . 0 1 hm5C_associated_SNPs_15578 0 0 1 0 0 Cytosol 1 0.500231643921137 0.722303867340088 0.999536712157726 hm5C_site_17209 DeepMRMD:0.722303867340088;iRNA_m5C:0.999536712157726 17210 chr16 56501895 56501895 1 + G A BLCA 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAAAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG < 41bp 1 0.579520476180948 1 0.921625137329102 experiment 0.840959047638103 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501895 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_15579 0 0 1 0 2 Ribosome 1 0.500231644186011 0.156749725341796 0.999536711627978 hm5C_site_17210 DeepMRMD:0.156749725341796;iRNA_m5C:0.999536711627978 17211 chr1 46295205 46295205 1 + G C BLCA 46295193 + 46295173 46295213 41 TCGTCAGGAGAAGCATCAAACCTGGTTCGAATGAGAAACCA TCGTCAGGAGAAGCATCAAACCTGGTTCGAATCAGAAACCA < 41bp 1 0.344404828387794 1 0.262414336204529 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46295193 chr1:46295205 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_15580 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17211 DeepMRMD:1;iRNA_m5C:0.999536712157815 17212 chr7 69064835 69064835 1 + G A BLCA 69064849 + 69064829 69064869 41 TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG TCCTCCACCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG < 41bp 1 0.174374068243064 1 0.0345391035079956 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064849 chr7:69064835 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_15581 0 0 0 0 0 Nucleus 1 0.500229768007712 1 0.999540463984576 hm5C_site_17212 DeepMRMD:1;iRNA_m5C:0.999540463984576 17213 chr11 57373917 57373917 1 + G A BLCA 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAAGAAAACCAAAATGGAACCCTTTCACTTCAAAAACTCA < 41bp 1 0.0160433399768994 1 0.0602539777755737 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373917 nonsynonymous SNV 0.001 1 13 hm5C_associated_SNPs_15582 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17213 DeepMRMD:1;iRNA_m5C:0.999536712157815 17214 chr11 57373917 57373917 1 + G A BLCA 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAAGAAAACCAAAATGGAACCCTTTCACTTCAAAAACTCAG < 41bp 1 0.0091422360799863 1 0.0781199634075165 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373917 nonsynonymous SNV 0.001 1 12 hm5C_associated_SNPs_15583 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17214 DeepMRMD:1;iRNA_m5C:0.999536712157815 17215 chr11 57373917 57373917 1 + G A BLCA 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AAGAAAACCAAAATGGAACCCTTTCACTTCAAAAACTCAGT < 41bp 1 0.0138589721284166 1 0.056576132774353 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373917 nonsynonymous SNV 0.001 1 11 hm5C_associated_SNPs_15584 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921034 1 0.999536712157932 hm5C_site_17215 DeepMRMD:1;iRNA_m5C:0.999536712157932 17216 chr11 57373917 57373917 1 + G A BLCA 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAAAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA < 41bp 1 0.475984130030718 1 0.348529398441315 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373917 nonsynonymous SNV 0.001 1 5 hm5C_associated_SNPs_15585 0 0 0 0 1 Endoplasmic reticulum 1 0.500232076021308 1 0.999535847957384 hm5C_site_17216 DeepMRMD:1;iRNA_m5C:0.999535847957384 17217 chr7 94057038 94057038 1 + C T BLCA 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC CGATGGAGACTTCTACAGGGCTGACCAGCCTTGCTCAGCAC < 41bp 1 0.131998490724217 1 0.0281738638877869 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057038 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_15587 1 0 0 0 1 Endoplasmic reticulum 1 0.500231643949621 1 0.999536712100759 hm5C_site_17217 DeepMRMD:1;iRNA_m5C:0.999536712100759 not specified not specified 17218 chr7 94057038 94057038 1 + C T BLCA 94057032 + 94057012 94057052 41 GAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCT GAGACTTCTACAGGGCTGACCAGCCTTGCTCAGCACCTTCT < 41bp 1 0.154326988252017 1 0.300578534603119 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057032 chr7:94057038 nonsynonymous SNV 1.000 5 27 hm5C_associated_SNPs_15588 1 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_17218 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 17219 chr10 75519926 75519926 1 + C G BLCA 75519908 + 75519888 75519928 41 GATCCAGACTCCCCAGCGATCTGCCCCATCACAGGCCTCCA GATCCAGACTCCCCAGCGATCTGCCCCATCACAGGCCTGCA < 41bp 1 0.392627986397744 1 0.597767055034637 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75519908 chr10:75519926 nonsynonymous SNV 0.990 2 39 hm5C_associated_SNPs_15589 0 0 1 0 0 Nucleus 1 0.500231643921092 0.804465889930726 0.999536712157815 hm5C_site_17219 DeepMRMD:0.804465889930726;iRNA_m5C:0.999536712157815 17220 chr16 2569581 2569581 1 + G C BLCA 2569563 + 2569543 2569583 41 AGCTTCCTCCAGCTGGGCGCCGGCCTGAGCGTGGGCCTGAG AGCTTCCTCCAGCTGGGCGCCGGCCTGAGCGTGGGCCTCAG < 41bp 1 0.506777224678658 1 0.758703708648682 experiment 0.986445550642684 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569563 chr16:2569581 synonymous SNV . 0 39 hm5C_associated_SNPs_15590 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643969186 0.482592582702636 0.999536712061628 hm5C_site_17220 DeepMRMD:0.482592582702636;iRNA_m5C:0.999536712061628 17221 chr1 220921997 220921997 1 + C T BLCA 220922017 + 220921997 220922037 41 CGCGCATGGCCCAGGCGGCGCCGGCGGCTGCAGCAGGTGGG TGCGCATGGCCCAGGCGGCGCCGGCGGCTGCAGCAGGTGGG < 41bp 1 0.652006469472629 1 0.500638961791992 experiment 0.695987061054741 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220922017 chr1:220921997 nonsynonymous SNV 0.007 1 1 hm5C_associated_SNPs_15591 0 0 0 0 0 nucleus 1 0.500231643921092 0.998722076416016 0.999536712157815 hm5C_site_17221 DeepMRMD:0.998722076416016;iRNA_m5C:0.999536712157815 17222 chr2 27900720 27900720 1 + G A BLCA 27900703 + 27900683 27900723 41 TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAGG TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTAAGG < 41bp 1 0.266867632249152 1 0.289260387420654 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900703 chr2:27900720 synonymous SNV . 0 38 hm5C_associated_SNPs_15592 0 0 1 0 1 nucleoplasm 1 0.50023164392107 1 0.999536712157861 hm5C_site_17222 DeepMRMD:1;iRNA_m5C:0.999536712157861 17223 chr9 131843433 131843433 1 + C G BLCA 131843453 + 131843433 131843473 41 CGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC GGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC < 41bp 1 0.383712918081589 1 0.396412432193756 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131843453 chr9:131843433 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_15593 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17223 DeepMRMD:1;iRNA_m5C:0.999536712157815 17224 chr1 173819576 173819576 1 + G T BLCA 173819569 + 173819549 173819589 41 TTAATCAGACTAATGGAGACCCAAGAGGAAGATGTGGTCCT TTAATCAGACTAATGGAGACCCAAGAGTAAGATGTGGTCCT < 41bp 1 0.155609342828337 1 0.400836795568466 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DARS2 ENSG00000117593 CDS Human protein_coding chr1:173819569 chr1:173819576 stopgain 0.905 0 28 hm5C_associated_SNPs_15594 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_17224 DeepMRMD:1;iRNA_m5C:0.999536712157814 17225 chr3 183435476 183435476 1 + C G BLCA 183435490 + 183435470 183435510 41 TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG TATTATGAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG < 41bp 1 0.0619390023721982 1 0.0602583289146423 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435490 chr3:183435476 nonsynonymous SNV 0.992 4 7 hm5C_associated_SNPs_15595 0 0 1 0 2 Nucleus 1 0.500231646540462 1 0.999536706919075 hm5C_site_17225 DeepMRMD:1;iRNA_m5C:0.999536706919075 17226 chr16 30779606 30779606 1 + G A BLCA 30779624 + 30779604 30779644 41 AAGAAGGAGGAGCTGGTCCCCTCTGAAGAGGACTTCCAGGG AAAAAGGAGGAGCTGGTCCCCTCTGAAGAGGACTTCCAGGG < 41bp 1 0.482644732976707 1 0.559867799282074 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30779624 chr16:30779606 synonymous SNV . 0 3 hm5C_associated_SNPs_15596 0 0 1 0 0 Ribosome 1 0.500231643921092 0.880264401435852 0.999536712157815 hm5C_site_17226 DeepMRMD:0.880264401435852;iRNA_m5C:0.999536712157815 17227 chr6 53785424 53785424 1 + G A BLCA 53785428 + 53785408 53785448 41 TCTTTGTCACTGCAGAGAATCTGCCTCGCTGTGGTGCACTG TCTTTGTCACTGCAGAAAATCTGCCTCGCTGTGGTGCACTG < 41bp 1 0.528792173048753 1 0.158787965774536 experiment 0.942415653902494 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53785428 chr6:53785424 synonymous SNV . 0 17 hm5C_associated_SNPs_15597 0 0 1 0 1 Ribosome 1 0.500231616487466 1 0.999536767025068 hm5C_site_17227 DeepMRMD:1;iRNA_m5C:0.999536767025068 17228 chr1 233482330 233482330 1 + C G BLCA 233482335 + 233482315 233482355 41 GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA GGCCCCCGAAGTGATGAAGTCTTCCTTGTTTTCTAAGGGAA < 41bp 1 0.163812621844392 1 0.0660922825336456 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482335 chr1:233482330 nonsynonymous SNV 0.998 5 16 hm5C_associated_SNPs_15599 0 0 1 0 1 unknown 1 0.500231648529475 1 0.99953670294105 hm5C_site_17228 DeepMRMD:1;iRNA_m5C:0.99953670294105 17229 chr6 35392262 35392262 1 + G A BLCA 35392256 + 35392236 35392276 41 CAGTGGAGACCGTGCGGGAGCTCACTGAGTTCGCCAAGAGC CAGTGGAGACCGTGCGGGAGCTCACTAAGTTCGCCAAGAGC < 41bp 1 0.222933929004355 1 0.113786220550537 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPARD ENSG00000112033 CDS Human protein_coding chr6:35392256 chr6:35392262 nonsynonymous SNV 0.730 3 27 hm5C_associated_SNPs_15600 0 0 1 0 0 Cytosol 1 0.500231646314744 1 0.999536707370511 hm5C_site_17229 DeepMRMD:1;iRNA_m5C:0.999536707370511 17230 chr6 35392262 35392262 1 + G A BLCA 35392258 + 35392238 35392278 41 GTGGAGACCGTGCGGGAGCTCACTGAGTTCGCCAAGAGCAT GTGGAGACCGTGCGGGAGCTCACTAAGTTCGCCAAGAGCAT < 41bp 1 0.634866236287614 1 0.222285211086273 experiment 0.730267527424772 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPARD ENSG00000112033 CDS Human protein_coding chr6:35392258 chr6:35392262 nonsynonymous SNV 0.730 3 25 hm5C_associated_SNPs_15601 0 0 1 0 0 Cytosol 1 0.50023160784034 1 0.999536784319321 hm5C_site_17230 DeepMRMD:1;iRNA_m5C:0.999536784319321 17231 chr2 219679356 219679356 1 + G C BLCA 219679360 + 219679340 219679380 41 CCCCACCGCTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG CCCCACCGCTGGCTGACAAACAGCCAGCCTGCTACCCCCAG < 41bp 1 0.508308983732932 1 0.371563732624054 experiment 0.983382032534135 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219679360 chr2:219679356 nonsynonymous SNV 0.095 3 17 hm5C_associated_SNPs_15602 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17231 DeepMRMD:1;iRNA_m5C:0.999536712157815 17232 chr20 42249548 42249548 1 + G A BLCA 42249532 + 42249512 42249552 41 TGGCTCACGACAGGAGACATCCACCTAAACCAGATTGATGC TGGCTCACGACAGGAGACATCCACCTAAACCAGATTAATGC < 41bp 1 0.124722943253865 1 0.0853811204433441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42249532 chr20:42249548 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_15603 0 0 1 3 1 chromatin 1 0.500231643921092 1 0.999536712157817 hm5C_site_17232 DeepMRMD:1;iRNA_m5C:0.999536712157817 17233 chr2 224824694 224824694 1 + C A BLCA 224824686 + 224824666 224824706 41 ATTGGAGCCCTGTTACAGAGCAGTGGACCTGAGAGGACTGC ATTGGAGCCCTGTTACAGAGCAGTGGACATGAGAGGACTGC < 41bp 1 0.522408852269318 1 0.269810020923615 experiment 0.955182295461363 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824686 chr2:224824694 nonsynonymous SNV 0.981 2 29 hm5C_associated_SNPs_15604 0 0 1 0 0 Ribosome 1 0.500279668965623 1 0.999440662068753 hm5C_site_17233 DeepMRMD:1;iRNA_m5C:0.999440662068753 17234 chr1 220970027 220970027 1 + C T BLCA 220970029 + 220970009 220970049 41 CAGGGACTGTGGCGAGGCCACCGCCCAGTGGATAACCAGCT CAGGGACTGTGGCGAGGCTACCGCCCAGTGGATAACCAGCT < 41bp 1 0.246308561497607 1 0.113359689712524 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970029 chr1:220970027 synonymous SNV . 0 19 hm5C_associated_SNPs_15605 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17234 DeepMRMD:1;iRNA_m5C:0.999536712157815 17235 chr11 9597639 9597639 1 + G C BLCA 9597628 + 9597608 9597648 41 GTGTCGTCGTAGAAAGAGAACGTATTGGAATGAGTAAGTCG GTGTCGTCGTAGAAAGAGAACGTATTGGAATCAGTAAGTCG < 41bp 1 0.0730052980301471 1 0.0923528075218201 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WEE1 ENSG00000166483 CDS Human protein_coding chr11:9597628 chr11:9597639 nonsynonymous SNV 0.994 2 32 hm5C_associated_SNPs_15606 0 0 1 0 1 Ribosome 1 0.500231646664253 1 0.999536706671494 hm5C_site_17235 DeepMRMD:1;iRNA_m5C:0.999536706671494 17236 chr19 6177350 6177350 1 + C G BLCA 6177336 + 6177316 6177356 41 CACTCAGCCATATTGCAGCACAGATGATGGACATCTGGGTA CACTCAGCCATATTGCAGCACAGATGATGGACATGTGGGTA < 41bp 1 0.378818671736065 1 0.0886440277099609 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6177336 chr19:6177350 nonsynonymous SNV 0.658 0 35 hm5C_associated_SNPs_15607 0 0 0 0 1 exosome 1 0.50023315352813 1 0.99953369294374 hm5C_site_17236 DeepMRMD:1;iRNA_m5C:0.99953369294374 17237 chr12 57552351 57552351 1 + C T BLCA 57552333 + 57552313 57552353 41 CTGGACTTCCACGCTGAGACCGGCTTCATCTACTTTGCCGA CTGGACTTCCACGCTGAGACCGGCTTCATCTACTTTGCTGA < 41bp 1 0.114612134637463 1 0.414411842823029 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57552333 chr12:57552351 synonymous SNV . 0 39 hm5C_associated_SNPs_15608 0 0 0 0 1 Exosome 1 0.500231643922236 1 0.999536712155527 hm5C_site_17237 DeepMRMD:1;iRNA_m5C:0.999536712155527 17238 chr1 156096689 156096689 1 + G A BLCA 156096700 + 156096680 156096720 41 GACACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGG GACACGGGCAAAGCCAGGGTCTCCCCTGTGAGCACTAGAGG < 41bp 1 0.165018437480755 1 0.242534965276718 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096700 chr1:156096689 synonymous SNV . 0 10 hm5C_associated_SNPs_15609 0 0 0 0 1 Cytosol 1 0.500231643921152 1 0.999536712157695 hm5C_site_17238 DeepMRMD:1;iRNA_m5C:0.999536712157695 17239 chr1 156096689 156096689 1 + G A BLCA 156096703 + 156096683 156096723 41 ACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT ACGGGCAAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT < 41bp 1 0.12155577754545 1 0.0751314759254456 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096703 chr1:156096689 synonymous SNV . 0 7 hm5C_associated_SNPs_15610 0 0 0 0 1 Cytosol 1 0.500231644841262 1 0.999536710317476 hm5C_site_17239 DeepMRMD:1;iRNA_m5C:0.999536710317476 17240 chr1 156096689 156096689 1 + G A BLCA 156096704 + 156096684 156096724 41 CGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT CGGGCAAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT < 41bp 1 0.175405711743292 1 0.0656973123550415 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096704 chr1:156096689 synonymous SNV . 0 6 hm5C_associated_SNPs_15611 0 0 0 0 1 Cytosol 1 0.500231643289466 1 0.999536713421068 hm5C_site_17240 DeepMRMD:1;iRNA_m5C:0.999536713421068 17241 chr1 156096689 156096689 1 + G A BLCA 156096705 + 156096685 156096725 41 GGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC GGGCAAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC < 41bp 1 0.375386321382058 1 0.104095935821533 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096705 chr1:156096689 synonymous SNV . 0 5 hm5C_associated_SNPs_15612 0 0 0 0 1 Cytosol 1 0.500231643921151 1 0.999536712157698 hm5C_site_17241 DeepMRMD:1;iRNA_m5C:0.999536712157698 17242 chr19 56172438 56172438 1 + C T BLCA 56172435 + 56172415 56172455 41 ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGG ATTCCAGCCACTGCTCTTCTCCCTACCATGACCCCTGACGG < 41bp 1 0.385846369411321 1 0.417290925979614 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172435 chr19:56172438 synonymous SNV . 0 24 hm5C_associated_SNPs_15613 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17242 DeepMRMD:1;iRNA_m5C:0.999536712157815 17243 chr19 56172438 56172438 1 + C T BLCA 56172437 + 56172417 56172457 41 TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTC TCCAGCCACTGCTCTTCTCCCTACCATGACCCCTGACGGTC < 41bp 1 0.385147590135088 1 0.108659416437149 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172437 chr19:56172438 synonymous SNV . 0 22 hm5C_associated_SNPs_15614 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17243 DeepMRMD:1;iRNA_m5C:0.999536712157815 17244 chr12 53663738 53663738 1 + G A BLCA 53663747 + 53663727 53663767 41 GGGCATTGTATGAGAGCTGCCAGTTCTTCCTTTCAGGCCTG GGGCATTGTATAAGAGCTGCCAGTTCTTCCTTTCAGGCCTG < 41bp 1 0.158155715380464 1 0.379389464855194 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663747 chr12:53663738 nonsynonymous SNV 0.598 2 12 hm5C_associated_SNPs_15615 0 0 1 0 0 Nucleus 1 0.500231655731833 1 0.999536688536334 hm5C_site_17244 DeepMRMD:1;iRNA_m5C:0.999536688536334 17245 chr8 37630287 37630287 1 + T G BLCA 37630300 + 37630280 37630320 41 CAATCTCTTCATGCTGGAAACAGTGGATTCTGTGAAGTTGG CAATCTCGTCATGCTGGAAACAGTGGATTCTGTGAAGTTGG < 41bp 1 0.448649620252033 1 0.322691172361374 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPBP ENSG00000147471 CDS Human protein_coding chr8:37630300 chr8:37630287 nonsynonymous SNV 0.998 0 8 hm5C_associated_SNPs_15617 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17245 DeepMRMD:1;iRNA_m5C:0.999536712157815 17246 chr15 81199027 81199027 1 + G C BLCA 81199009 + 81198989 81199029 41 CCCTTTCTGCCCTAGGGAAACCAATGTACCTGCACATCGGG CCCTTTCTGCCCTAGGGAAACCAATGTACCTGCACATCCGG < 41bp 1 0.115614887474029 1 0.0632162988185883 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81199009 chr15:81199027 nonsynonymous SNV 0.977 2 39 hm5C_associated_SNPs_15618 0 0 0 0 1 Nucleus 1 0.500231643921081 1 0.999536712157837 hm5C_site_17246 DeepMRMD:1;iRNA_m5C:0.999536712157837 17247 chr9 93624499 93624499 1 + G A BLCA 93624497 + 93624477 93624517 41 CTCTCTTCTAGGATCCGAGCCAGAGACAACAACGGCTCCTA CTCTCTTCTAGGATCCGAGCCAAAGACAACAACGGCTCCTA < 41bp 1 0.390639070050607 1 0.82882833480835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624497 chr9:93624499 nonsynonymous SNV 0.982 1 23 hm5C_associated_SNPs_15619 0 0 0 0 1 Cytosol 1 0.500231643921092 0.3423433303833 0.999536712157816 hm5C_site_17247 DeepMRMD:0.3423433303833;iRNA_m5C:0.999536712157816 17248 chr4 41262687 41262687 1 + G C BLCA 41262672 + 41262652 41262692 41 TTACATTCGCAGCATGAGAACTTCAGGAAAAAGCAGATTGA TTACATTCGCAGCATGAGAACTTCAGGAAAAAGCACATTGA < 41bp 1 0.382234360361059 1 0.250367403030396 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41262672 chr4:41262687 nonsynonymous SNV 0.954 4 36 hm5C_associated_SNPs_15620 0 0 1 0 1 Ribosome 1 0.500231643802479 1 0.999536712395042 hm5C_site_17248 DeepMRMD:1;iRNA_m5C:0.999536712395042 17249 chr3 52233298 52233298 1 + T G BLCA 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGG < 41bp 1 0.36767548914495 1 0.256709605455399 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233298 nonsynonymous SNV 0.963 2 41 hm5C_associated_SNPs_15621 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17249 DeepMRMD:1;iRNA_m5C:0.999536712157815 17250 chr7 99123756 99123756 1 + C T BLCA 99123761 + 99123741 99123781 41 AACTTTATTCAGCATCGGCGCATCCACACTGGAGAAAAACC AACTTTATTCAGCATTGGCGCATCCACACTGGAGAAAAACC < 41bp 1 0.0304380228227146 1 0.109167128801346 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZKSCAN5 ENSG00000196652 CDS Human protein_coding chr7:99123761 chr7:99123756 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_15622 0 0 1 0 0 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_17250 DeepMRMD:1;iRNA_m5C:0.999536712157808 17251 chr14 21549964 21549964 1 + G T BLCA 21549960 + 21549940 21549980 41 CGGTGCCAGCAGTGGAGGGGCCCAGTGGGGGCCCCGCAGCC CGGTGCCAGCAGTGGAGGGGCCCATTGGGGGCCCCGCAGCC < 41bp 1 0.22635546751171 1 0.38729989528656 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549960 chr14:21549964 nonsynonymous SNV 0.110 0 25 hm5C_associated_SNPs_15623 0 0 0 0 0 Cytosol 1 0.500231643921081 1 0.999536712157838 hm5C_site_17251 DeepMRMD:1;iRNA_m5C:0.999536712157838 17252 chr14 21549964 21549964 1 + G T BLCA 21549961 + 21549941 21549981 41 GGTGCCAGCAGTGGAGGGGCCCAGTGGGGGCCCCGCAGCCC GGTGCCAGCAGTGGAGGGGCCCATTGGGGGCCCCGCAGCCC < 41bp 1 0.287706197721828 1 0.163825005292892 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549961 chr14:21549964 nonsynonymous SNV 0.110 0 24 hm5C_associated_SNPs_15624 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17252 DeepMRMD:1;iRNA_m5C:0.999536712157815 17253 chr14 21549964 21549964 1 + G T BLCA 21549962 + 21549942 21549982 41 GTGCCAGCAGTGGAGGGGCCCAGTGGGGGCCCCGCAGCCCC GTGCCAGCAGTGGAGGGGCCCATTGGGGGCCCCGCAGCCCC < 41bp 1 0.536117288043975 1 0.52517294883728 experiment 0.927765423912049 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549962 chr14:21549964 nonsynonymous SNV 0.110 0 23 hm5C_associated_SNPs_15625 0 0 0 0 0 Cytosol 1 0.500231643921092 0.94965410232544 0.999536712157816 hm5C_site_17253 DeepMRMD:0.94965410232544;iRNA_m5C:0.999536712157816 17254 chr14 21549964 21549964 1 + G T BLCA 21549971 + 21549951 21549991 41 GTGGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGC GTGGAGGGGCCCATTGGGGGCCCCGCAGCCCCTCGCCCAGC < 41bp 1 0.411408371055144 1 0.310472756624222 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549971 chr14:21549964 nonsynonymous SNV 0.110 0 14 hm5C_associated_SNPs_15626 0 0 0 0 0 Cytosol 1 0.50023164393652 1 0.999536712126959 hm5C_site_17254 DeepMRMD:1;iRNA_m5C:0.999536712126959 17255 chr14 21549964 21549964 1 + G T BLCA 21549972 + 21549952 21549992 41 TGGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGCC TGGAGGGGCCCATTGGGGGCCCCGCAGCCCCTCGCCCAGCC < 41bp 1 0.308952637740408 1 0.164401769638062 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549972 chr14:21549964 nonsynonymous SNV 0.110 0 13 hm5C_associated_SNPs_15627 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17255 DeepMRMD:1;iRNA_m5C:0.999536712157815 17256 chr14 21549964 21549964 1 + G T BLCA 21549973 + 21549953 21549993 41 GGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGCCT GGAGGGGCCCATTGGGGGCCCCGCAGCCCCTCGCCCAGCCT < 41bp 1 0.603053195252227 1 0.435070484876633 experiment 0.793893609495546 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549973 chr14:21549964 nonsynonymous SNV 0.110 0 12 hm5C_associated_SNPs_15628 0 0 0 0 0 Cytosol 1 0.500231643945308 1 0.999536712109384 hm5C_site_17256 DeepMRMD:1;iRNA_m5C:0.999536712109384 17257 chr14 21549964 21549964 1 + G T BLCA 21549974 + 21549954 21549994 41 GAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGCCTC GAGGGGCCCATTGGGGGCCCCGCAGCCCCTCGCCCAGCCTC < 41bp 1 0.642006626425792 1 0.63929557800293 experiment 0.715986747148416 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549974 chr14:21549964 nonsynonymous SNV 0.110 0 11 hm5C_associated_SNPs_15629 0 0 0 0 0 Cytosol 1 0.500231643921092 0.72140884399414 0.999536712157815 hm5C_site_17257 DeepMRMD:0.72140884399414;iRNA_m5C:0.999536712157815 17258 chr1 203276346 203276346 1 + G A BLCA 203276335 + 203276315 203276355 41 CCCATCATCAGCAGGGTGGCCAGCCAGATCGGACTCAGCCA CCCATCATCAGCAGGGTGGCCAGCCAGATCGAACTCAGCCA < 41bp 1 0.454560249239918 1 0.164541184902191 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BTG2 ENSG00000159388 CDS Human protein_coding chr1:203276335 chr1:203276346 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_15630 0 0 1 0 0 exosome 1 0.499860682763456 1 1 hm5C_site_17258 DeepMRMD:1;iRNA_m5C:1 17259 chr11 68363635 68363635 1 + G A BLCA 68363639 + 68363619 68363659 41 AAAGCAAGACTTGTTTGAACCCAGCAGTGCCAACACGGAGG AAAGCAAGACTTGTTTAAACCCAGCAGTGCCAACACGGAGG < 41bp 1 0.281769292236855 1 0.318532079458237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363639 chr11:68363635 nonsynonymous SNV 0.904 0 17 hm5C_associated_SNPs_15631 0 0 1 0 2 Nucleus 1 0.500231643921531 1 0.999536712156937 hm5C_site_17259 DeepMRMD:1;iRNA_m5C:0.999536712156937 17260 chr15 41865267 41865267 1 + C T BLCA 41865260 + 41865240 41865280 41 TTGCCTGCGGCATGGAGTACCTGAGCTCTCGGAACTTCATC TTGCCTGCGGCATGGAGTACCTGAGCTTTCGGAACTTCATC < 41bp 1 0.490514849040709 1 0.15782967209816 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865260 chr15:41865267 nonsynonymous SNV 0.998 3 28 hm5C_associated_SNPs_15632 0 0 1 0 2 Ribosome 1 0.500231586810392 1 0.999536826379216 hm5C_site_17260 DeepMRMD:1;iRNA_m5C:0.999536826379216 17261 chr9 33026956 33026956 1 + G A BLCA 33026973 + 33026953 33026993 41 TTGGAGGAGGAGGAAGGATGCAGAGAGAAAGGAGAGGTAAG TTGAAGGAGGAGGAAGGATGCAGAGAGAAAGGAGAGGTAAG < 41bp 1 0.650545885138641 1 0.81051504611969 experiment 0.698908229722718 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DNAJA1 ENSG00000086061 CDS Human protein_coding chr9:33026973 chr9:33026956 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_15633 0 0 1 0 1 Cytosol 1 0.500231644000416 0.37896990776062 0.999536711999168 hm5C_site_17261 DeepMRMD:0.37896990776062;iRNA_m5C:0.999536711999168 17262 chr2 32640622 32640622 1 + G A BLCA 32640607 + 32640587 32640627 41 TTCATTTGTTGGTAGGACTGCGGACATGCCCTGTTGAATCC TTCATTTGTTGGTAGGACTGCGGACATGCCCTGTTAAATCC < 41bp 1 0.107762506456281 1 0.503969788551331 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32640607 chr2:32640622 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_15634 0 0 1 0 0 Nucleus 1 0.500231643921093 0.992060422897338 0.999536712157815 hm5C_site_17262 DeepMRMD:0.992060422897338;iRNA_m5C:0.999536712157815 17263 chr3 10127604 10127604 1 + C T BLCA 10127599 + 10127579 10127619 41 ACAGCCAGCCTTTGGAGGAACTACTCAGGTGAGTCATAACT ACAGCCAGCCTTTGGAGGAACTACTTAGGTGAGTCATAACT < 41bp 1 0.197529092958066 1 0.121427029371262 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10127599 chr3:10127604 synonymous SNV . 0 26 hm5C_associated_SNPs_15635 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17263 DeepMRMD:1;iRNA_m5C:0.999536712157815 17264 chr9 95599742 95599742 1 + G A BLCA 95599736 + 95599716 95599756 41 CGCTGTGGTCTCCGCTGGGGCCGCTGGAGGCCCCGGGGCCT CGCTGTGGTCTCCGCTGGGGCCGCTGAAGGCCCCGGGGCCT < 41bp 1 0.459403060897777 1 0.182970076799393 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599736 chr9:95599742 . . 0 27 hm5C_associated_SNPs_15636 0 0 0 0 0 unknown 1 0.500278870535211 1 0.999442258929577 hm5C_site_17264 DeepMRMD:1;iRNA_m5C:0.999442258929577 17265 chr9 95599742 95599742 1 + G A BLCA 95599746 + 95599726 95599766 41 TCCGCTGGGGCCGCTGGAGGCCCCGGGGCCTGAGTTTCCGG TCCGCTGGGGCCGCTGAAGGCCCCGGGGCCTGAGTTTCCGG < 41bp 1 0.657166647311901 1 0.618052959442139 experiment 0.685666705376198 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599746 chr9:95599742 . . 0 17 hm5C_associated_SNPs_15638 0 0 0 0 0 unknown 1 0.500231643921092 0.763894081115722 0.999536712157815 hm5C_site_17265 DeepMRMD:0.763894081115722;iRNA_m5C:0.999536712157815 17266 chr9 95599742 95599742 1 + G A BLCA 95599747 + 95599727 95599767 41 CCGCTGGGGCCGCTGGAGGCCCCGGGGCCTGAGTTTCCGGC CCGCTGGGGCCGCTGAAGGCCCCGGGGCCTGAGTTTCCGGC < 41bp 1 0.692096745861454 1 0.734333872795105 experiment 0.615806508277091 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599747 chr9:95599742 . . 0 16 hm5C_associated_SNPs_15639 0 0 0 0 0 unknown 1 0.500231643921093 0.53133225440979 0.999536712157815 hm5C_site_17266 DeepMRMD:0.53133225440979;iRNA_m5C:0.999536712157815 17267 chr19 1461114 1461114 1 + G T BLCA 1461096 + 1461076 1461116 41 ACATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG ACATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCTTG < 41bp 1 0.258060484757312 1 0.351279199123383 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC2 ENSG00000115266 CDS Human protein_coding chr19:1461096 chr19:1461114 nonsynonymous SNV 0.841 2 39 hm5C_associated_SNPs_15640 0 0 0 0 2 nucleolus 1 0.500231643802613 1 0.999536712394774 hm5C_site_17267 DeepMRMD:1;iRNA_m5C:0.999536712394774 17268 chr18 29171903 29171903 1 + G A BLCA 29171892 + 29171872 29171912 41 TCTCATCGTCTGCTCCTCCTCTGCCTTGCTGGACTGGTATT TCTCATCGTCTGCTCCTCCTCTGCCTTGCTGAACTGGTATT < 41bp 1 0.489400246165403 1 0.118999660015106 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTR ENSG00000118271 CDS Human protein_coding chr18:29171892 chr18:29171903 nonsynonymous SNV 0.992 3 32 hm5C_associated_SNPs_15641 0 0 1 0 1 cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_17268 DeepMRMD:1;iRNA_m5C:0.99953671215782 17269 chr17 16343359 16343359 1 + G A BLCA 16343379 + 16343359 16343399 41 GAAATCACTAATAGGAAGTGCCGTCAGAAGCGATAACTGAC AAAATCACTAATAGGAAGTGCCGTCAGAAGCGATAACTGAC < 41bp 1 0.0273362852111864 1 0.236116290092468 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD49A ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16343379 chr17:16343359 . . 0 1 hm5C_associated_SNPs_15642 0 0 1 1 0 unknown 1 0.500231643881899 1 0.999536712236202 hm5C_site_17269 DeepMRMD:1;iRNA_m5C:0.999536712236202 17270 chr10 24832553 24832553 1 + G A BLCA 24832548 + 24832528 24832568 41 GATCATCATTTTCGATGAGCCCATGGACATCCGGTCTGCCT GATCATCATTTTCGATGAGCCCATGAACATCCGGTCTGCCT < 41bp 1 0.0730088943338985 1 0.0188910961151123 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24832548 chr10:24832553 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_15643 0 0 0 0 0 Nucleus 1 0.500231643921113 1 0.999536712157775 hm5C_site_17270 DeepMRMD:1;iRNA_m5C:0.999536712157775 17271 chr14 61285476 61285476 1 + C T BLCA 61285479 + 61285459 61285499 41 TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATCTACCCAA TTGCTCTGCTTTTGGCTTAGCATAAAGATAGATCTACCCAA < 41bp 1 0.455865976283274 1 0.217152744531631 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61285479 chr14:61285476 stopgain 1.000 1 18 hm5C_associated_SNPs_15644 0 0 1 0 2 Ribosome 1 0.500231643919606 1 0.999536712160788 hm5C_site_17271 DeepMRMD:1;iRNA_m5C:0.999536712160788 17272 chr19 10571772 10571772 1 + C T BLCA 10571761 + 10571741 10571781 41 ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT ATCACCCTGGGGTCTCCAACCAGTTCCTCATTAACACCAGT < 41bp 1 0.14060227456753 1 0.702729821205139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10571761 chr19:10571772 stopgain . 0 32 hm5C_associated_SNPs_15645 0 0 0 0 2 chromatin 1 0.500231643921001 0.594540357589722 0.999536712157999 hm5C_site_17272 DeepMRMD:0.594540357589722;iRNA_m5C:0.999536712157999 17273 chr12 120876184 120876184 1 + C G BLCA 120876203 + 120876183 120876223 41 TCGCATGTGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCG TGGCATGTGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCG < 41bp 1 0.086031256281793 1 0.0500719249248505 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX6A1 ENSG00000111775;ENSG00000111780 CDS Human other chr12:120876203 chr12:120876184 nonsynonymous SNV 0.990 1 2 hm5C_associated_SNPs_15646 0 0 1 0 1 Ribosome 1 0.500231643924196 1 0.999536712151608 hm5C_site_17273 DeepMRMD:1;iRNA_m5C:0.999536712151608 17274 chr14 64990098 64990098 1 + G C BLCA 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGAGCGTCAGTTGCGACTGCACAATCATATGCACAAAGGC < 41bp 1 0.605557940302503 1 0.636806130409241 experiment 0.788884119394993 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990098 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_15647 0 0 0 0 1 Cytosol 1 0.500231063348752 0.726387739181518 0.999537873302497 hm5C_site_17274 DeepMRMD:0.726387739181518;iRNA_m5C:0.999537873302497 17275 chr2 105959589 105959589 1 + C T BLCA 105959573 + 105959553 105959593 41 AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGGC AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTTAGGC < 41bp 1 0.441057569529572 1 0.479640066623688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105959573 chr2:105959589 nonsynonymous SNV 0.691 0 37 hm5C_associated_SNPs_15649 0 0 1 0 2 Ribosome 1 0.500231644348865 1 0.999536711302269 hm5C_site_17275 DeepMRMD:1;iRNA_m5C:0.999536711302269 17276 chr11 107968457 107968457 1 + C T BLCA 107968473 + 107968453 107968493 41 TTCTCAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA TTCTTAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA < 41bp 1 0.247137437060172 1 0.16225004196167 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968473 chr11:107968457 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_15651 0 0 1 0 2 Ribosome 1 0.500231643921112 1 0.999536712157777 hm5C_site_17276 DeepMRMD:1;iRNA_m5C:0.999536712157777 17277 chr3 141006166 141006166 1 + C T BLCA 141006161 + 141006141 141006181 41 CTATCATCTCTCTAGGAAACCGTATCACCCAAAACTGGAAG CTATCATCTCTCTAGGAAACCGTATTACCCAAAACTGGAAG < 41bp 1 0.14895350388439 1 0.0990951955318451 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:141006161 chr3:141006166 nonsynonymous SNV 0.992 3 26 hm5C_associated_SNPs_15652 0 0 0 0 1 Ribosome 1 0.500231643921145 1 0.999536712157711 hm5C_site_17277 DeepMRMD:1;iRNA_m5C:0.999536712157711 17278 chr6 53660187 53660187 1 + G C BLCA 53660192 + 53660172 53660212 41 GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGA GAGCTGCTGCTGGACCCCAACCAGCTCCGCGAGCTGCCCGA < 41bp 1 0.471840914441678 1 0.466221153736115 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660192 chr6:53660187 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_15653 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17278 DeepMRMD:1;iRNA_m5C:0.999536712157815 17279 chr9 131843464 131843464 1 + C T BLCA 131843453 + 131843433 131843473 41 CGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC CGCTCCCCGCTTCATGGCGGCCGGTGACCCTTACCCACGTC < 41bp 1 0.369752628077139 1 0.608356654644012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131843453 chr9:131843464 synonymous SNV . 0 32 hm5C_associated_SNPs_15654 0 0 1 0 1 Ribosome 1 0.500231643921093 0.783286690711976 0.999536712157815 hm5C_site_17279 DeepMRMD:0.783286690711976;iRNA_m5C:0.999536712157815 17280 chr20 49195795 49195795 1 + G A BLCA 49195806 + 49195786 49195826 41 CAGACAGCCGACCAGCTGCGCTTCTCCTACCTGGCTGTGAT CAGACAGCCAACCAGCTGCGCTTCTCCTACCTGGCTGTGAT < 41bp 1 0.075402106496514 1 0.0422307550907135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49195806 chr20:49195795 nonsynonymous SNV 0.813 4 10 hm5C_associated_SNPs_15655 0 0 1 0 2 Ribosome 1 0.500237558999358 1 0.999524882001283 hm5C_site_17280 DeepMRMD:1;iRNA_m5C:0.999524882001283 17281 chr6 30691799 30691799 1 + G A BLCA 30691780 + 30691760 30691800 41 CGGCCGATACCTCACCGTGGCTGCTGTCTTCCGTGGTCGGA CGGCCGATACCTCACCGTGGCTGCTGTCTTCCGTGGTCGAA < 41bp 1 0.381188650146231 1 0.0677885115146637 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TUBB ENSG00000196230 CDS Human protein_coding chr6:30691780 chr6:30691799 synonymous SNV . 0 40 hm5C_associated_SNPs_15657 0 0 1 0 0 Cytosol 1 0.500231657915829 1 0.999536684168343 hm5C_site_17281 DeepMRMD:1;iRNA_m5C:0.999536684168343 17282 chr6 30691799 30691799 1 + G A BLCA 30691787 + 30691767 30691807 41 TACCTCACCGTGGCTGCTGTCTTCCGTGGTCGGATGTCCAT TACCTCACCGTGGCTGCTGTCTTCCGTGGTCGAATGTCCAT < 41bp 1 0.248509835630678 1 0.100665003061295 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TUBB ENSG00000196230 CDS Human protein_coding chr6:30691787 chr6:30691799 synonymous SNV . 0 33 hm5C_associated_SNPs_15658 0 0 1 0 0 Cytosol 1 0.500231644076767 1 0.999536711846465 hm5C_site_17282 DeepMRMD:1;iRNA_m5C:0.999536711846465 17283 chr6 30691799 30691799 1 + G A BLCA 30691797 + 30691777 30691817 41 TGGCTGCTGTCTTCCGTGGTCGGATGTCCATGAAGGAGGTC TGGCTGCTGTCTTCCGTGGTCGAATGTCCATGAAGGAGGTC < 41bp 1 0.3480317634046 1 0.525515913963318 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TUBB ENSG00000196230 CDS Human protein_coding chr6:30691797 chr6:30691799 synonymous SNV . 0 23 hm5C_associated_SNPs_15659 0 0 1 0 0 Cytosol 1 0.500232427589399 0.948968172073364 0.999535144821202 hm5C_site_17283 DeepMRMD:0.948968172073364;iRNA_m5C:0.999535144821202 17284 chr17 74554942 74554942 1 + G A BLCA 74554932 + 74554912 74554952 41 GGTATCTTTTGTGAGGAGGTCTGACTTGCTGAGGCTCAGCT GGTATCTTTTGTGAGGAGGTCTGACTTGCTAAGGCTCAGCT < 41bp 1 0.226548536582848 1 0.252847880125046 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1C ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74554932 chr17:74554942 . . 0 31 hm5C_associated_SNPs_15660 0 0 1 0 0 unknown 1 0.500231643914562 1 0.999536712170875 hm5C_site_17284 DeepMRMD:1;iRNA_m5C:0.999536712170875 17285 chr17 74554942 74554942 1 + G A BLCA 74554936 + 74554916 74554956 41 TCTTTTGTGAGGAGGTCTGACTTGCTGAGGCTCAGCTGTTT TCTTTTGTGAGGAGGTCTGACTTGCTAAGGCTCAGCTGTTT < 41bp 1 0.240362682079557 1 0.0302753448486328 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1C ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74554936 chr17:74554942 . . 0 27 hm5C_associated_SNPs_15661 0 0 1 0 0 unknown 1 0.50023152340642 1 0.99953695318716 hm5C_site_17285 DeepMRMD:1;iRNA_m5C:0.99953695318716 17286 chr17 74554942 74554942 1 + G A BLCA 74554946 + 74554926 74554966 41 GGAGGTCTGACTTGCTGAGGCTCAGCTGTTTAATACAAATC GGAGGTCTGACTTGCTAAGGCTCAGCTGTTTAATACAAATC < 41bp 1 0.307416867568576 1 0.0960941016674042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD1C ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74554946 chr17:74554942 . . 0 17 hm5C_associated_SNPs_15662 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17286 DeepMRMD:1;iRNA_m5C:0.999536712157815 17287 chr17 74554942 74554942 1 + G A BLCA 74554948 + 74554928 74554968 41 AGGTCTGACTTGCTGAGGCTCAGCTGTTTAATACAAATCTG AGGTCTGACTTGCTAAGGCTCAGCTGTTTAATACAAATCTG < 41bp 1 0.409176043083366 1 0.142599046230316 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD1C ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74554948 chr17:74554942 . . 0 15 hm5C_associated_SNPs_15663 0 0 1 0 0 unknown 1 0.500231504668044 1 0.999536990663913 hm5C_site_17287 DeepMRMD:1;iRNA_m5C:0.999536990663913 17288 chr3 49679857 49679857 1 + G C BLCA 49679871 + 49679851 49679891 41 GACCAAGAGAGATCTCGGGGCCCAGGAGGACCACAGCCTGG GACCAACAGAGATCTCGGGGCCCAGGAGGACCACAGCCTGG < 41bp 1 0.120999857755665 1 0.465881615877151 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BSN ENSG00000164061 CDS Human protein_coding chr3:49679871 chr3:49679857 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_15664 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_17288 DeepMRMD:1;iRNA_m5C:0.999536712157816 17289 chr3 49679857 49679857 1 + G C BLCA 49679872 + 49679852 49679892 41 ACCAAGAGAGATCTCGGGGCCCAGGAGGACCACAGCCTGGG ACCAACAGAGATCTCGGGGCCCAGGAGGACCACAGCCTGGG < 41bp 1 0.206218701440204 1 0.536597609519958 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BSN ENSG00000164061 CDS Human protein_coding chr3:49679872 chr3:49679857 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_15665 0 0 0 0 0 chromatin 1 0.500231643921092 0.926804780960084 0.999536712157815 hm5C_site_17289 DeepMRMD:0.926804780960084;iRNA_m5C:0.999536712157815 17290 chr3 49679857 49679857 1 + G C BLCA 49679873 + 49679853 49679893 41 CCAAGAGAGATCTCGGGGCCCAGGAGGACCACAGCCTGGGT CCAACAGAGATCTCGGGGCCCAGGAGGACCACAGCCTGGGT < 41bp 1 0.61622080104462 1 0.79871791601181 experiment 0.76755839791076 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BSN ENSG00000164061 CDS Human protein_coding chr3:49679873 chr3:49679857 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_15666 0 0 0 0 0 chromatin 1 0.500231643921092 0.40256416797638 0.999536712157815 hm5C_site_17290 DeepMRMD:0.40256416797638;iRNA_m5C:0.999536712157815 17291 chr12 108086623 108086623 1 + C G BLCA 108086612 + 108086592 108086632 41 TGCTGAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCT TGCTGAGACTCTTGGTGAATCTCTCTTGGGTGTTACGGTCT < 41bp 1 0.290726522198483 1 0.0710243880748749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086612 chr12:108086623 nonsynonymous SNV 0.993 3 32 hm5C_associated_SNPs_15667 0 0 1 0 2 Ribosome 1 0.500231531004324 1 0.999536937991353 hm5C_site_17291 DeepMRMD:1;iRNA_m5C:0.999536937991353 17292 chr12 108086623 108086623 1 + C G BLCA 108086614 + 108086594 108086634 41 CTGAGACTCTTGGTGAATCTCTCTTGGGTCTTACGGTCTAC CTGAGACTCTTGGTGAATCTCTCTTGGGTGTTACGGTCTAC < 41bp 1 0.514860862986989 1 0.1542908847332 experiment 0.970278274026022 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086614 chr12:108086623 nonsynonymous SNV 0.993 3 30 hm5C_associated_SNPs_15668 0 0 1 0 2 Ribosome 1 0.500231063217499 1 0.999537873565001 hm5C_site_17292 DeepMRMD:1;iRNA_m5C:0.999537873565001 17293 chr11 985542 985542 1 + G A BLCA 985545 + 985525 985565 41 CCAACGCGAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA CCAACGCGAAGAATGCCATGCTCTTCGAGGCCATCAGCTTA < 41bp 1 0.0815644148643367 1 0.0834944248199463 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985545 chr11:985542 nonsynonymous SNV 0.921 3 18 hm5C_associated_SNPs_15670 0 0 1 0 1 Nucleus 1 0.500231643921096 1 0.999536712157808 hm5C_site_17293 DeepMRMD:1;iRNA_m5C:0.999536712157808 17294 chr16 30941554 30941554 1 + C T BLCA 30941537 + 30941517 30941557 41 TCTTCCTCCTCGGACTCAGACTCCGACTCCGACTCTTCGGG TCTTCCTCCTCGGACTCAGACTCCGACTCCGACTCTTTGGG < 41bp 1 0.396939458776108 1 0.835701763629913 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30941537 chr16:30941554 nonsynonymous SNV 0.305 1 38 hm5C_associated_SNPs_15671 0 0 1 0 0 chromatin 1 0.500231643920721 0.328596472740174 0.999536712158558 hm5C_site_17294 DeepMRMD:0.328596472740174;iRNA_m5C:0.999536712158558 17295 chr3 160122125 160122125 1 + G A BLCA 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATAATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT < 41bp 1 0.111115985521757 1 0.0568875074386597 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122125 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_15672 0 0 1 2 1 Nucleus 1 0.500231644470633 1 0.999536711058734 hm5C_site_17295 DeepMRMD:1;iRNA_m5C:0.999536711058734 17296 chr6 42975942 42975942 1 + C T BLCA 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTTATCTACGAGACGGAGCATCACAACGGGATTGCTGAG < 41bp 1 0.287111793976404 1 0.0891509652137756 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975942 synonymous SNV . 0 5 hm5C_associated_SNPs_15673 0 0 1 0 2 Ribosome 1 0.500231646706732 1 0.999536706586536 hm5C_site_17296 DeepMRMD:1;iRNA_m5C:0.999536706586536 17297 chr7 21631027 21631027 1 + C T BLCA 21631019 + 21630999 21631039 41 AGCACAGAGTTGAGCGCACACAGAAAAACGTGAAGGTGATC AGCACAGAGTTGAGCGCACACAGAAAAATGTGAAGGTGATC < 41bp 1 0.532268062788214 1 0.414564609527588 experiment 0.935463874423571 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21631019 chr7:21631027 synonymous SNV . 0 29 hm5C_associated_SNPs_15674 1 0 0 0 0 nucleolus 1 0.500231643921032 1 0.999536712157935 hm5C_site_17297 DeepMRMD:1;iRNA_m5C:0.999536712157935 Primary ciliary dyskinesia Primary ciliary dyskinesia 17298 chr16 23700835 23700835 1 + C T BLCA 23700824 + 23700804 23700844 41 TTTTCATCCAGATCACCCTCCTTAAATATTTCCGCAATTAC TTTTCATCCAGATCACCCTCCTTAAATATTTTCGCAATTAC < 41bp 1 0.124146816606052 1 0.326046615839005 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700824 chr16:23700835 synonymous SNV . 0 32 hm5C_associated_SNPs_15675 0 0 1 0 1 Ribosome 1 0.50023164391398 1 0.99953671217204 hm5C_site_17298 DeepMRMD:1;iRNA_m5C:0.99953671217204 17299 chr14 96707349 96707349 1 + G C BLCA 96707365 + 96707345 96707385 41 TCCTGAATGTCGTGGGCTTCCTGCTGCCCCTGAGTGTCATC TCCTCAATGTCGTGGGCTTCCTGCTGCCCCTGAGTGTCATC < 41bp 1 0.613407529004251 1 0.11488088965416 experiment 0.773184941991498 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BDKRB2 ENSG00000168398 CDS Human protein_coding chr14:96707365 chr14:96707349 synonymous SNV . 0 5 hm5C_associated_SNPs_15676 0 0 0 0 0 exosome 1 0.500231659256858 1 0.999536681486283 hm5C_site_17299 DeepMRMD:1;iRNA_m5C:0.999536681486283 17300 chr1 10231366 10231366 1 + G A BLCA 10231351 + 10231331 10231371 41 GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGC GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCAAAAGC < 41bp 1 0.212574145664583 1 0.182148396968842 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10231351 chr1:10231366 synonymous SNV . 0 36 hm5C_associated_SNPs_15677 0 0 1 0 1 Cytosol 1 0.50023283139988 1 0.999534337200241 hm5C_site_17300 DeepMRMD:1;iRNA_m5C:0.999534337200241 17301 chr18 13096282 13096282 1 + C T BLCA 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTGGCCAGCGCATTGCCTCACAGTCACGCTGCAGCATGGAT < 41bp 1 0.0894302610939849 1 0.0655702650547028 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096282 nonsynonymous SNV 0.647 4 30 hm5C_associated_SNPs_15678 0 0 1 0 1 Nucleus 1 0.500231651452276 1 0.999536697095447 hm5C_site_17301 DeepMRMD:1;iRNA_m5C:0.999536697095447 17302 chr7 97833481 97833481 1 + C T BLCA 97833471 + 97833451 97833491 41 CCAGCTTTTCCCTCACACACCTGACCGACTCGGACATCGAG CCAGCTTTTCCCTCACACACCTGACCGACTTGGACATCGAG < 41bp 1 0.123509709346666 1 0.0536280572414398 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833471 chr7:97833481 nonsynonymous SNV 0.970 5 31 hm5C_associated_SNPs_15679 0 0 0 0 1 Nucleus 1 0.500231514906099 1 0.999536970187802 hm5C_site_17302 DeepMRMD:1;iRNA_m5C:0.999536970187802 17303 chr1 161173249 161173249 1 + G C BLCA 161173246 + 161173226 161173266 41 GAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAG GAGGTGTTCGGCAGTGGCAGCCACATGTGGAATGGGCACAG < 41bp 1 0.580016423819097 1 0.224104970693588 experiment 0.839967152361806 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173246 chr1:161173249 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_15680 0 0 1 0 2 Ribosome 1 0.500231818582578 1 0.999536362834844 hm5C_site_17303 DeepMRMD:1;iRNA_m5C:0.999536362834844 17304 chr12 104340409 104340409 1 + C G BLCA 104340419 + 104340399 104340439 41 CTATGCGAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC CTATGCGAGTGAGAAGAAAACATTTGAAATTAATCCCAGAC < 41bp 1 0.119554618540551 1 0.199996650218964 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340419 chr12:104340409 nonsynonymous SNV 0.986 2 11 hm5C_associated_SNPs_15681 0 0 1 0 2 Nucleus 1 0.500231643929051 1 0.999536712141897 hm5C_site_17304 DeepMRMD:1;iRNA_m5C:0.999536712141897 17305 chr19 11553317 11553317 1 + G C BLCA 11553302 + 11553282 11553322 41 GAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCAGAAGCT GAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCACAAGCT < 41bp 1 0.358948955893446 1 0.526552200317383 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553302 chr19:11553317 nonsynonymous SNV 0.999 0 36 hm5C_associated_SNPs_15682 0 0 1 0 1 Nucleus 1 0.500255955914443 0.946895599365234 0.999488088171113 hm5C_site_17305 DeepMRMD:0.946895599365234;iRNA_m5C:0.999488088171113 17306 chr19 11553317 11553317 1 + G C BLCA 11553314 + 11553294 11553334 41 AGAGAGGCCAAAGAGCAGCACCAGAAGCTGTGGGAAGGTAT AGAGAGGCCAAAGAGCAGCACCACAAGCTGTGGGAAGGTAT < 41bp 1 0.202457414927718 1 0.0786389112472534 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553314 chr19:11553317 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_15683 0 0 1 0 1 Nucleus 1 0.500233486370425 1 0.99953302725915 hm5C_site_17306 DeepMRMD:1;iRNA_m5C:0.99953302725915 17307 chr16 89759837 89759837 1 + C A BLCA 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTACCAGTA < 41bp 1 0.572962095573195 1 0.800567746162415 experiment 0.854075808853609 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759837 synonymous SNV . 0 35 hm5C_associated_SNPs_15684 0 0 1 0 2 chromatin 1 0.500231643921092 0.39886450767517 0.999536712157815 hm5C_site_17307 DeepMRMD:0.39886450767517;iRNA_m5C:0.999536712157815 17308 chr15 73415041 73415041 1 + C G BLCA 73415033 + 73415013 73415053 41 TCAAACTTCCAAGTGGAATGCTGGTTATCAGCAATGCAACT TCAAACTTCCAAGTGGAATGCTGGTTATGAGCAATGCAACT < 41bp 1 0.342421880184874 1 0.232961565256119 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEO1 ENSG00000067141 CDS Human protein_coding chr15:73415033 chr15:73415041 nonsynonymous SNV 0.926 3 29 hm5C_associated_SNPs_15685 0 0 0 0 0 Ribosome 1 0.500231643512063 1 0.999536712975875 hm5C_site_17308 DeepMRMD:1;iRNA_m5C:0.999536712975875 17309 chr4 146576334 146576334 1 + C T BLCA 146576316 + 146576296 146576336 41 TAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATCTC TAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATTTC < 41bp 1 0.529676725745971 1 0.0799096822738647 experiment 0.940646548508059 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMAA ENSG00000151611 CDS Human protein_coding chr4:146576316 chr4:146576334 synonymous SNV . 0 39 hm5C_associated_SNPs_15686 0 0 1 0 1 nucleoplasm 1 0.500231643921085 1 0.99953671215783 hm5C_site_17309 DeepMRMD:1;iRNA_m5C:0.99953671215783 17310 chr1 150325402 150325402 1 + G A BLCA 150325400 + 150325380 150325420 41 GCATTTCAAAAAGCATGGGGCTGAACACTACTGGGACCTTG GCATTTCAAAAAGCATGGGGCTAAACACTACTGGGACCTTG < 41bp 1 0.497609665659761 1 0.142583042383194 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150325400 chr1:150325402 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_15687 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17310 DeepMRMD:1;iRNA_m5C:0.999536712157815 17311 chr17 17701368 17701368 1 + C T BLCA 17701357 + 17701337 17701377 41 ACCCGGCCAACTTCAAGGACCTTGGGGACCTCTGTGGGCCC ACCCGGCCAACTTCAAGGACCTTGGGGACCTTTGTGGGCCC < 41bp 1 0.211489473780085 1 0.0958406329154968 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17701357 chr17:17701368 synonymous SNV . 0 32 hm5C_associated_SNPs_15688 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17311 DeepMRMD:1;iRNA_m5C:0.999536712157815 17312 chr1 22336318 22336318 1 + C G BLCA 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTGGAGTC < 41bp 1 0.177693775208565 1 0.314940214157104 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336318 nonsynonymous SNV 0.141 3 36 hm5C_associated_SNPs_15689 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643956621 1 0.999536712086758 hm5C_site_17312 DeepMRMD:1;iRNA_m5C:0.999536712086758 17313 chr1 22336318 22336318 1 + C G BLCA 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTGGAGTCT < 41bp 1 0.29026482695762 1 0.306048691272736 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336318 nonsynonymous SNV 0.141 3 35 hm5C_associated_SNPs_15690 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643452793 1 0.999536713094413 hm5C_site_17313 DeepMRMD:1;iRNA_m5C:0.999536713094413 17314 chr1 22336318 22336318 1 + C G BLCA 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCCACGGTGTTCACTGGAGTCTCCG < 41bp 1 0.437407385372839 1 0.385585933923721 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336318 nonsynonymous SNV 0.141 3 32 hm5C_associated_SNPs_15692 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921048 1 0.999536712157903 hm5C_site_17314 DeepMRMD:1;iRNA_m5C:0.999536712157903 17315 chr1 22336318 22336318 1 + C G BLCA 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCCACGGTGTTCACTGGAGTCTCCGCCTTCAT < 41bp 1 0.647506554762905 1 0.0790870189666748 experiment 0.70498689047419 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336318 nonsynonymous SNV 0.141 3 25 hm5C_associated_SNPs_15693 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642038418 1 0.999536715923165 hm5C_site_17315 DeepMRMD:1;iRNA_m5C:0.999536715923165 17316 chr1 22336318 22336318 1 + C G BLCA 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACGGTGTTCACTGGAGTCTCCGCCTTCATCGACTGGAT < 41bp 1 0.652543224685057 1 0.121916860342026 experiment 0.694913550629886 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336318 nonsynonymous SNV 0.141 3 16 hm5C_associated_SNPs_15694 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643916148 1 0.999536712167704 hm5C_site_17316 DeepMRMD:1;iRNA_m5C:0.999536712167704 17317 chr1 22336318 22336318 1 + C G BLCA 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTGGAGTCTCCGCCTTCATCGACTGGATTGA < 41bp 1 0.457932627977563 1 0.0819307565689087 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336318 nonsynonymous SNV 0.141 3 13 hm5C_associated_SNPs_15695 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643944755 1 0.999536712110489 hm5C_site_17317 DeepMRMD:1;iRNA_m5C:0.999536712110489 17318 chr1 22336318 22336318 1 + C G BLCA 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTGGAGTCTCCGCCTTCATCGACTGGATTGAGGA < 41bp 1 0.412351980340831 1 0.771330595016479 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336318 nonsynonymous SNV 0.141 3 10 hm5C_associated_SNPs_15696 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642269988 0.457338809967042 0.999536715460023 hm5C_site_17318 DeepMRMD:0.457338809967042;iRNA_m5C:0.999536715460023 17319 chr1 22336318 22336318 1 + C G BLCA 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTGGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT < 41bp 1 0.387920613282472 1 0.315990775823593 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336318 nonsynonymous SNV 0.141 3 7 hm5C_associated_SNPs_15697 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921635 1 0.999536712156731 hm5C_site_17319 DeepMRMD:1;iRNA_m5C:0.999536712156731 17320 chr1 22336318 22336318 1 + C G BLCA 22336335 + 22336315 22336355 41 ACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG ACTGGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG < 41bp 1 0.650371810477745 1 0.478009760379791 experiment 0.699256379044511 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336335 chr1:22336318 nonsynonymous SNV 0.141 3 4 hm5C_associated_SNPs_15698 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392109 1 0.99953671215782 hm5C_site_17320 DeepMRMD:1;iRNA_m5C:0.99953671215782 17321 chr12 113596723 113596723 1 + C G BLCA 113596717 - 113596697 113596737 41 GCGCCTTCGGCCGGGGTGCCCGCTCCAAGAAGGGCAAGATG GCGCCTTCGGCCGGCGTGCCCGCTCCAAGAAGGGCAAGATG < 41bp 1 0.313339175618377 1 0.316582590341568 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX54 ENSG00000123064 CDS Human protein_coding chr12:113596717 chr12:113596723 nonsynonymous SNV 0.079 1 15 hm5C_associated_SNPs_15699 0 0 1 0 0 Ribosome 1 0.50023164392106 1 0.999536712157879 hm5C_site_17321 DeepMRMD:1;iRNA_m5C:0.999536712157879 17322 chr12 113596723 113596723 1 + C G BLCA 113596718 - 113596698 113596738 41 GGCGCCTTCGGCCGGGGTGCCCGCTCCAAGAAGGGCAAGAT GGCGCCTTCGGCCGGCGTGCCCGCTCCAAGAAGGGCAAGAT < 41bp 1 0.195987296525724 1 0.235091298818588 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX54 ENSG00000123064 CDS Human protein_coding chr12:113596718 chr12:113596723 nonsynonymous SNV 0.079 1 16 hm5C_associated_SNPs_15700 0 0 1 0 0 Ribosome 1 0.500231644059565 1 0.999536711880869 hm5C_site_17322 DeepMRMD:1;iRNA_m5C:0.999536711880869 17323 chr12 113730855 113730855 1 + C G BLCA 113730854 + 113730834 113730874 41 GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATA GTCACCAGGCTGCTGGAGACCGTCTCCCAGATGGAGAGATA < 41bp 1 0.255137055767654 1 0.0863112807273865 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113730854 chr12:113730855 nonsynonymous SNV 0.946 0 22 hm5C_associated_SNPs_15701 0 0 1 0 1 chromatin 1 0.500231643920379 1 0.999536712159242 hm5C_site_17323 DeepMRMD:1;iRNA_m5C:0.999536712159242 17324 chr19 30313232 30313232 1 + C T BLCA 30313222 + 30313202 30313242 41 TTGCTGCTTCGGCCTTGTATCATTTCTCGTCATCTGAATTG TTGCTGCTTCGGCCTTGTATCATTTCTCGTTATCTGAATTG < 41bp 1 0.0665790378905066 1 0.15515211224556 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313222 chr19:30313232 nonsynonymous SNV 0.856 3 31 hm5C_associated_SNPs_15702 0 0 0 0 2 Ribosome 1 0.500231643921116 1 0.999536712157768 hm5C_site_17324 DeepMRMD:1;iRNA_m5C:0.999536712157768 17325 chr11 46400035 46400035 1 + G A BLCA 46400025 + 46400005 46400045 41 AGGTGAAGAGCTGATTGAGGCTGCCAAGAGGAACGACTTCT AGGTGAAGAGCTGATTGAGGCTGCCAAGAGAAACGACTTCT < 41bp 1 0.178429484108132 1 0.116234719753265 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400025 chr11:46400035 synonymous SNV . 0 31 hm5C_associated_SNPs_15703 0 0 1 0 2 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_17325 DeepMRMD:1;iRNA_m5C:0.99953671215781 17326 chr11 46400035 46400035 1 + G A BLCA 46400038 + 46400018 46400058 41 ATTGAGGCTGCCAAGAGGAACGACTTCTGTAAGGTACTAGC ATTGAGGCTGCCAAGAGAAACGACTTCTGTAAGGTACTAGC < 41bp 1 0.243984677539571 1 0.410293281078339 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400038 chr11:46400035 synonymous SNV . 0 18 hm5C_associated_SNPs_15704 0 0 1 0 2 Ribosome 1 0.500231643929812 1 0.999536712140376 hm5C_site_17326 DeepMRMD:1;iRNA_m5C:0.999536712140376 17327 chr1 156756611 156756611 1 + C G BLCA 156756593 + 156756573 156756613 41 CCCTGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTG CCCTGTTGTGGGCACCACAACCACCACTCCGTCGCCCTGTG < 41bp 1 0.155763406989485 1 0.0970993340015411 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756593 chr1:156756611 nonsynonymous SNV 0.993 4 39 hm5C_associated_SNPs_15705 0 0 1 0 0 Ribosome 1 0.500231174752442 1 0.999537650495115 hm5C_site_17327 DeepMRMD:1;iRNA_m5C:0.999537650495115 17328 chr1 156756611 156756611 1 + C G BLCA 156756596 + 156756576 156756616 41 TGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTGCTA TGTTGTGGGCACCACAACCACCACTCCGTCGCCCTGTGCTA < 41bp 1 0.214641749143701 1 0.27191424369812 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756596 chr1:156756611 nonsynonymous SNV 0.993 4 36 hm5C_associated_SNPs_15706 0 0 1 0 0 Ribosome 1 0.500231643942623 1 0.999536712114755 hm5C_site_17328 DeepMRMD:1;iRNA_m5C:0.999536712114755 17329 chr20 31019208 31019208 1 + T G BLCA 31019221 + 31019201 31019241 41 GCCCTGATCAACTCTCGGACCTTCCATGCCTTACCATCACA GCCCTGAGCAACTCTCGGACCTTCCATGCCTTACCATCACA < 41bp 1 0.0873086757131766 1 0.0894524157047272 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31019221 chr20:31019208 nonsynonymous SNV 0.999 4 8 hm5C_associated_SNPs_15707 0 0 1 0 2 Nucleus 1 0.500231643920825 1 0.999536712158351 hm5C_site_17329 DeepMRMD:1;iRNA_m5C:0.999536712158351 17330 chr1 2160703 2160703 1 + C T BLCA 2160685 + 2160665 2160705 41 ACGGCCGACCAGCTGGAGATCCTCAAAGTCATGGGCATCCT ACGGCCGACCAGCTGGAGATCCTCAAAGTCATGGGCATTCT < 41bp 1 0.213180913049518 1 0.0214203298091888 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKI ENSG00000157933 CDS Human protein_coding chr1:2160685 chr1:2160703 synonymous SNV . 0 39 hm5C_associated_SNPs_15708 0 0 1 0 0 Endoplasmic reticulum 1 0.500231638465495 1 0.99953672306901 hm5C_site_17330 DeepMRMD:1;iRNA_m5C:0.99953672306901 17331 chr14 52169290 52169290 1 + A C BLCA 52169280 + 52169260 52169300 41 ATCCACTTCCGTGTGCAGTACTATGTGGAAAATGGCAGATT ATCCACTTCCGTGTGCAGTACTATGTGGAACATGGCAGATT < 41bp 1 0.210463977049944 1 0.106976926326752 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52169280 chr14:52169290 nonsynonymous SNV 0.994 1 31 hm5C_associated_SNPs_15709 0 0 0 0 1 nucleus 1 0.500228393264808 1 0.999543213470384 hm5C_site_17331 DeepMRMD:1;iRNA_m5C:0.999543213470384 17332 chr1 55073615 55073615 1 + G A BLCA 55073619 + 55073599 55073639 41 CCCTTCCTTCACTCAGGGACCCCTATGTCATCGCGCTGAGG CCCTTCCTTCACTCAGAGACCCCTATGTCATCGCGCTGAGG < 41bp 1 0.148928264755579 1 0.038059264421463 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55073619 chr1:55073615 synonymous SNV . 0 17 hm5C_associated_SNPs_15711 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17332 DeepMRMD:1;iRNA_m5C:0.999536712157815 17333 chr1 110172959 110172959 1 + G A BLCA 110172951 + 110172931 110172971 41 TCCTCAGCTATCACCGGAATCCGCTACCGGAGTACCTGTCC TCCTCAGCTATCACCGGAATCCGCTACCAGAGTACCTGTCC < 41bp 1 0.223410508291511 1 0.323955595493317 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110172951 chr1:110172959 synonymous SNV . 0 29 hm5C_associated_SNPs_15714 0 0 0 0 0 Cytosol 1 0.500231768938145 1 0.999536462123709 hm5C_site_17333 DeepMRMD:1;iRNA_m5C:0.999536462123709 17334 chr5 156786153 156786153 1 + C T BLCA 156786136 + 156786116 156786156 41 CTGTGGTCATGGAGGAACTGCTAAAGATTGTGAAGAGCTTG CTGTGGTCATGGAGGAACTGCTAAAGATTGTGAAGAGTTTG < 41bp 1 0.308195465641152 1 0.130009710788727 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156786136 chr5:156786153 synonymous SNV . 0 38 hm5C_associated_SNPs_15715 0 0 1 0 1 Cytosol 1 0.500231643959228 1 0.999536712081543 hm5C_site_17334 DeepMRMD:1;iRNA_m5C:0.999536712081543 17335 chr6 31919363 31919363 1 + G A BLCA 31919375 + 31919355 31919395 41 GTTCACAAGAGAAGTCGTTTCATTCAAGTGAGTCCTCCCTT GTTCACAAAAGAAGTCGTTTCATTCAAGTGAGTCCTCCCTT < 41bp 1 0.0993140637933879 1 0.029966413974762 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31919375 chr6:31919363 synonymous SNV . 0 9 hm5C_associated_SNPs_15716 0 0 1 0 2 chromatin 1 0.500231241963246 1 0.999537516073509 hm5C_site_17335 DeepMRMD:1;iRNA_m5C:0.999537516073509 17336 chr6 159181706 159181706 1 + A C BLCA 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTACTGGAGAGCTCACAGTCCGGGCTAAGCTGGT < 41bp 1 0.601275207033376 1 0.287270754575729 experiment 0.797449585933248 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181706 nonsynonymous SNV 0.082 1 11 hm5C_associated_SNPs_15717 0 0 0 0 2 exosome 1 0.500231643920695 1 0.99953671215861 hm5C_site_17336 DeepMRMD:1;iRNA_m5C:0.99953671215861 17337 chr8 37914710 37914710 1 + G A BLCA 37914699 + 37914679 37914719 41 CCCACCATTCCGGGGGTCACCAGCCCTTCCAGTGATGAGCC CCCACCATTCCGGGGGTCACCAGCCCTTCCAATGATGAGCC < 41bp 1 0.53737319340988 1 0.62015438079834 experiment 0.92525361318024 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4EBP1 ENSG00000187840 CDS Human protein_coding chr8:37914699 chr8:37914710 nonsynonymous SNV 0.897 0 32 hm5C_associated_SNPs_15718 0 0 1 0 1 Ribosome 1 0.500231618638064 0.75969123840332 0.999536762723872 hm5C_site_17337 DeepMRMD:0.75969123840332;iRNA_m5C:0.999536762723872 17338 chr16 23700964 23700964 1 + C T BLCA 23700976 + 23700956 23700996 41 CTGCACCTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA CTGCACCTTAGCAACGGCAGCGTGCAGATCAACTTCTTCCA < 41bp 1 0.215502027903276 1 0.206723898649216 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700976 chr16:23700964 synonymous SNV . 0 9 hm5C_associated_SNPs_15719 0 0 1 0 1 Ribosome 1 0.500231647769232 1 0.999536704461536 hm5C_site_17338 DeepMRMD:1;iRNA_m5C:0.999536704461536 17339 chr7 142458459 142458459 1 + G A BLCA 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTACAACTGTGAGAAGAATTC < 41bp 1 0.322100648547194 1 0.414350032806396 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458459 nonsynonymous SNV 0.031 1 34 hm5C_associated_SNPs_15720 0 0 0 0 1 Cytosol 1 0.500231643949827 1 0.999536712100346 hm5C_site_17339 DeepMRMD:1;iRNA_m5C:0.999536712100346 17340 chr7 142458459 142458459 1 + G A BLCA 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTACAACTGTGAGAAGAATTCTGT < 41bp 1 0.206270866136957 1 0.353601217269897 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458459 nonsynonymous SNV 0.031 1 31 hm5C_associated_SNPs_15721 0 0 0 0 1 Cytosol 1 0.50023164392085 1 0.999536712158299 hm5C_site_17340 DeepMRMD:1;iRNA_m5C:0.999536712158299 17341 chr7 142458459 142458459 1 + G A BLCA 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGAAGAATTCTGTCCC < 41bp 1 0.398414768874296 1 0.478183209896088 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458459 nonsynonymous SNV 0.031 1 28 hm5C_associated_SNPs_15722 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_17341 DeepMRMD:1;iRNA_m5C:0.999536712157815 17342 chr7 142458459 142458459 1 + G A BLCA 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGAAGAATTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.122851862282704 1 0.147478044033051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458459 nonsynonymous SNV 0.031 1 14 hm5C_associated_SNPs_15723 0 0 0 0 1 Cytosol 1 0.500231643921084 1 0.999536712157832 hm5C_site_17342 DeepMRMD:1;iRNA_m5C:0.999536712157832 17343 chr7 142458459 142458459 1 + G A BLCA 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGAAGAATTCTGTCCCCTACCAGGTGTCCCTGAA < 41bp 1 0.116473948424378 1 0.183680236339569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458459 nonsynonymous SNV 0.031 1 10 hm5C_associated_SNPs_15724 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_17343 DeepMRMD:1;iRNA_m5C:0.999536712157817 17344 chr7 142458459 142458459 1 + G A BLCA 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGAAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.0860339735632156 1 0.0827161967754364 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458459 nonsynonymous SNV 0.031 1 9 hm5C_associated_SNPs_15725 0 0 0 0 1 Cytosol 1 0.50023164392675 1 0.9995367121465 hm5C_site_17344 DeepMRMD:1;iRNA_m5C:0.9995367121465 17345 chr7 142458459 142458459 1 + G A BLCA 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGAAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.0135064186840421 1 0.083607941865921 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458459 nonsynonymous SNV 0.031 1 8 hm5C_associated_SNPs_15726 0 0 0 0 1 Cytosol 1 0.500231643910071 1 0.999536712179857 hm5C_site_17345 DeepMRMD:1;iRNA_m5C:0.999536712179857 17346 chr7 142458459 142458459 1 + G A BLCA 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGAAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.171510886152715 1 0.0650572180747986 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458459 nonsynonymous SNV 0.031 1 7 hm5C_associated_SNPs_15727 0 0 0 0 1 Cytosol 1 0.500231643923672 1 0.999536712152656 hm5C_site_17346 DeepMRMD:1;iRNA_m5C:0.999536712152656 17347 chr7 142458459 142458459 1 + G A BLCA 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGAAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.199372079397069 1 0.316688895225525 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458459 nonsynonymous SNV 0.031 1 4 hm5C_associated_SNPs_15728 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17347 DeepMRMD:1;iRNA_m5C:0.999536712157815 17348 chr7 142458459 142458459 1 + G A BLCA 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGAAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.61549727666529 1 0.826404452323914 experiment 0.769005446669419 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458459 nonsynonymous SNV 0.031 1 3 hm5C_associated_SNPs_15729 0 0 0 0 1 Cytosol 1 0.500231643924653 0.347191095352172 0.999536712150694 hm5C_site_17348 DeepMRMD:0.347191095352172;iRNA_m5C:0.999536712150694 17349 chr17 78022522 78022522 1 + G A BLCA 78022532 + 78022512 78022552 41 GGAAGCAGAAGACGAAGGGTCCCAGCTGGTGGTTTTGGACC GGAAGCAGAAAACGAAGGGTCCCAGCTGGTGGTTTTGGACC < 41bp 1 0.215087196705432 1 0.222372621297836 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022532 chr17:78022522 nonsynonymous SNV 0.011 0 11 hm5C_associated_SNPs_15730 0 0 1 0 1 exosome 1 0.500231643921083 1 0.999536712157835 hm5C_site_17349 DeepMRMD:1;iRNA_m5C:0.999536712157835 17350 chr10 105128238 105128238 1 + G T BLCA 105128225 + 105128205 105128245 41 CTCGGCCCCTGGCCCTGCGGCCCCCGACCCTCCGGGCACTG CTCGGCCCCTGGCCCTGCGGCCCCCGACCCTCCTGGCACTG < 41bp 1 0.2541975228452 1 0.0524328649044037 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128225 chr10:105128238 synonymous SNV . 0 34 hm5C_associated_SNPs_15731 0 0 1 0 1 cytosol 1 0.5002316429879 1 0.9995367140242 hm5C_site_17350 DeepMRMD:1;iRNA_m5C:0.9995367140242 17351 chr10 105128238 105128238 1 + G T BLCA 105128226 + 105128206 105128246 41 TCGGCCCCTGGCCCTGCGGCCCCCGACCCTCCGGGCACTGG TCGGCCCCTGGCCCTGCGGCCCCCGACCCTCCTGGCACTGG < 41bp 1 0.489855585258335 1 0.157421350479126 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128226 chr10:105128238 synonymous SNV . 0 33 hm5C_associated_SNPs_15732 0 0 1 0 1 cytosol 1 0.500231644033935 1 0.99953671193213 hm5C_site_17351 DeepMRMD:1;iRNA_m5C:0.99953671193213 17352 chr10 105128238 105128238 1 + G T BLCA 105128228 + 105128208 105128248 41 GGCCCCTGGCCCTGCGGCCCCCGACCCTCCGGGCACTGGCG GGCCCCTGGCCCTGCGGCCCCCGACCCTCCTGGCACTGGCG < 41bp 1 0.237309062696234 1 0.22476053237915 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128228 chr10:105128238 synonymous SNV . 0 31 hm5C_associated_SNPs_15734 0 0 1 0 1 cytosol 1 0.500231644018826 1 0.999536711962347 hm5C_site_17352 DeepMRMD:1;iRNA_m5C:0.999536711962347 17353 chr10 105128238 105128238 1 + G T BLCA 105128258 + 105128238 105128278 41 GGGCACTGGCGCTTCGGGGGCCACGGTCGTCTCAGGTTCAG TGGCACTGGCGCTTCGGGGGCCACGGTCGTCTCAGGTTCAG < 41bp 1 0.520802831030553 1 0.335865199565887 experiment 0.958394337938893 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128258 chr10:105128238 synonymous SNV . 0 1 hm5C_associated_SNPs_15735 0 0 1 0 1 cytosol 1 0.500366765199845 1 0.999266469600309 hm5C_site_17353 DeepMRMD:1;iRNA_m5C:0.999266469600309 17354 chr4 126372119 126372119 1 + T G BLCA 126372100 + 126372080 126372120 41 CTATTTTGAAATCTCAGAAGCAGCTCCTAAAGGTACTATTG CTATTTTGAAATCTCAGAAGCAGCTCCTAAAGGTACTATGG < 41bp 1 0.0586342099557901 1 0.236558228731155 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126372100 chr4:126372119 nonsynonymous SNV 0.113 0 40 hm5C_associated_SNPs_15737 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_17354 DeepMRMD:1;iRNA_m5C:0.999536712157816 17355 chr10 118305637 118305637 1 + G A BLCA 118305648 + 118305628 118305668 41 ACTGCTGCTGGGAGCAGTAGCAGGTAAGAAAACAAATAAAT ACTGCTGCTAGGAGCAGTAGCAGGTAAGAAAACAAATAAAT < 41bp 1 0.669295655119342 1 0.854607701301575 experiment 0.661408689761316 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118305648 chr10:118305637 synonymous SNV . 0 10 hm5C_associated_SNPs_15738 0 0 0 0 2 unknown 1 0.500231643923149 0.29078459739685 0.999536712153703 hm5C_site_17355 DeepMRMD:0.29078459739685;iRNA_m5C:0.999536712153703 17356 chr6 144613024 144613024 1 + T C BLCA 144613036 + 144613016 144613056 41 TTCAGTGATATCATTAAGTCCAGATCTGGTAGGTAAAGGAA TTCAGTGACATCATTAAGTCCAGATCTGGTAGGTAAAGGAA < 41bp 1 0.0589806355033869 1 0.309093296527863 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144613036 chr6:144613024 synonymous SNV . 0 9 hm5C_associated_SNPs_15739 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_17356 DeepMRMD:1;iRNA_m5C:0.999536712157815 17357 chr6 144613024 144613024 1 + T C BLCA 144613041 + 144613021 144613061 41 TGATATCATTAAGTCCAGATCTGGTAGGTAAAGGAAGCTCA TGACATCATTAAGTCCAGATCTGGTAGGTAAAGGAAGCTCA < 41bp 1 0.157520281903363 1 0.283302813768387 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144613041 chr6:144613024 synonymous SNV . 0 4 hm5C_associated_SNPs_15740 0 0 1 0 1 Nucleus 1 0.5002042177799 1 0.9995915644402 hm5C_site_17357 DeepMRMD:1;iRNA_m5C:0.9995915644402 17358 chr3 153840100 153840100 1 + C G BLCA 153840113 + 153840093 153840133 41 CTCTCCTCGACTTCGACGGCCCAAGTCACCCAAGCTCCCCA CTCTCCTGGACTTCGACGGCCCAAGTCACCCAAGCTCCCCA < 41bp 1 0.246999949671582 1 0.0902507901191711 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF26 ENSG00000114790 CDS Human protein_coding chr3:153840113 chr3:153840100 nonsynonymous SNV 0.939 0 8 hm5C_associated_SNPs_15742 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17358 DeepMRMD:1;iRNA_m5C:0.999536712157815 17359 chr4 144390270 144390270 1 + G C BLCA 144390263 + 144390243 144390283 41 TGACCAACAGAAGACCTTGGCTCTAAAGAGTACCCGGGAAG TGACCAACAGAAGACCTTGGCTCTAAACAGTACCCGGGAAG < 41bp 1 0.59209074486334 1 0.84088408946991 experiment 0.815818510273321 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144390263 chr4:144390270 nonsynonymous SNV 0.969 4 28 hm5C_associated_SNPs_15744 0 0 1 0 1 chromatin 1 0.500231643921092 0.31823182106018 0.999536712157815 hm5C_site_17359 DeepMRMD:0.31823182106018;iRNA_m5C:0.999536712157815 17360 chr2 97215195 97215195 1 + G C BLCA 97215177 + 97215157 97215197 41 ACGCCCATCGAGAGGGTGCCCCATCTCGGCTTCAAGCAGAG ACGCCCATCGAGAGGGTGCCCCATCTCGGCTTCAAGCACAG < 41bp 1 0.128087078876233 1 0.130952835083008 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID5A ENSG00000196843 CDS Human protein_coding chr2:97215177 chr2:97215195 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_15745 0 0 0 0 0 Cytosol 1 0.500231643512585 1 0.99953671297483 hm5C_site_17360 DeepMRMD:1;iRNA_m5C:0.99953671297483 17361 chr1 1262984 1262984 1 + C T BLCA 1262964 + 1262944 1262984 41 ACCACCCCTGGGTCGTGCGCCGCGCCGTCACCGTGGCCTTC ACCACCCCTGGGTCGTGCGCCGCGCCGTCACCGTGGCCTTT < 41bp 1 0.473899960206991 1 0.0839404463768005 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPTP ENSG00000224051 CDS Human protein_coding chr1:1262964 chr1:1262984 synonymous SNV . 0 41 hm5C_associated_SNPs_15746 0 0 0 0 0 Ribosome 1 0.500231645373885 1 0.99953670925223 hm5C_site_17361 DeepMRMD:1;iRNA_m5C:0.99953670925223 17362 chr9 37770008 37770008 1 + C G BLCA 37769995 + 37769975 37770015 41 CCTTGGAAACCCTTGTGTACCTGACTCCTGACTCAGAACAC CCTTGGAAACCCTTGTGTACCTGACTCCTGACTGAGAACAC < 41bp 1 0.421785815357069 1 0.0485954284667969 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37769995 chr9:37770008 stopgain 0.985 1 34 hm5C_associated_SNPs_15747 0 0 1 1 2 chromatin 1 0.500231647393449 1 0.999536705213101 hm5C_site_17362 DeepMRMD:1;iRNA_m5C:0.999536705213101 17363 chr11 108196125 108196125 1 + G T BLCA 108196145 + 108196125 108196165 41 GAGCCTATCATGGCTCTACGCACAGTCATTTTGGAGATCCT TAGCCTATCATGGCTCTACGCACAGTCATTTTGGAGATCCT < 41bp 1 0.264489763720229 1 0.0708832442760468 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108196145 chr11:108196125 stopgain 1.000 1 1 hm5C_associated_SNPs_15749 0 0 1 0 1 Nucleus 1 0.500231046358037 1 0.999537907283927 hm5C_site_17363 DeepMRMD:1;iRNA_m5C:0.999537907283927 17364 chr2 74756539 74756539 1 + C T BLCA 74756536 - 74756516 74756556 41 CTGCGCCTCTTTCTCGGGATCCACGTCTTCCTGGTCAGCTG CTGCGCCTCTTTCTCGGAATCCACGTCTTCCTGGTCAGCTG < 41bp 1 0.457905489670925 1 0.326033502817154 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AUP1 ENSG00000115307 CDS Human protein_coding chr2:74756536 chr2:74756539 synonymous SNV . 0 18 hm5C_associated_SNPs_15750 0 0 1 0 2 Ribosome 1 0.500231646969619 1 0.999536706060763 hm5C_site_17364 DeepMRMD:1;iRNA_m5C:0.999536706060763 17365 chr9 137328325 137328325 1 + C G BLCA 137328316 + 137328296 137328336 41 AGACCTGTTCCCTGCAGGTTCGCTAAGCTCTTGCTCCGCCT AGACCTGTTCCCTGCAGGTTCGCTAAGCTGTTGCTCCGCCT < 41bp 1 0.373064987443207 1 0.0987880825996399 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RXRA ENSG00000186350 CDS Human protein_coding chr9:137328316 chr9:137328325 synonymous SNV . 0 30 hm5C_associated_SNPs_15751 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17365 DeepMRMD:1;iRNA_m5C:0.999536712157815 17366 chr4 79173586 79173586 1 + C G BLCA 79173606 + 79173586 79173626 41 CTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC GTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC < 41bp 1 0.220297432191602 1 0.576003849506378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79173606 chr4:79173586 nonsynonymous SNV 0.761 4 1 hm5C_associated_SNPs_15752 0 0 1 0 1 Nucleus 1 0.500231635301811 0.847992300987244 0.999536729396378 hm5C_site_17366 DeepMRMD:0.847992300987244;iRNA_m5C:0.999536729396378 17367 chr22 31592944 31592944 1 + C G BLCA 31592933 + 31592913 31592953 41 CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTCAAGGACAGA CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTGAAGGACAGA < 41bp 1 0.137077278151231 1 0.207948625087738 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF185 ENSG00000138942 CDS Human protein_coding chr22:31592933 chr22:31592944 nonsynonymous SNV 0.998 3 32 hm5C_associated_SNPs_15753 0 0 1 0 2 Ribosome 1 0.500232000921693 1 0.999535998156613 hm5C_site_17367 DeepMRMD:1;iRNA_m5C:0.999535998156613 17368 chr14 89069337 89069337 1 + C G BLCA 89069326 + 89069306 89069346 41 CTGCAGCCTCAAACAAGGGACTCAGAGGTCTCCTCCACCCA CTGCAGCCTCAAACAAGGGACTCAGAGGTCTGCTCCACCCA < 41bp 1 0.484435232571596 1 0.205687165260315 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89069326 chr14:89069337 synonymous SNV . 0 32 hm5C_associated_SNPs_15755 0 0 1 0 2 Nucleus 1 0.500231643921056 1 0.999536712157889 hm5C_site_17368 DeepMRMD:1;iRNA_m5C:0.999536712157889 17369 chr1 39927575 39927575 1 + G C BLCA 39927585 + 39927565 39927605 41 CACCAAGTTAGAGATGACTGCTGTGGCTGACATTTTCGACC CACCAAGTTACAGATGACTGCTGTGGCTGACATTTTCGACC < 41bp 1 0.124624564869196 1 0.0730728209018707 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39927585 chr1:39927575 nonsynonymous SNV 0.999 4 11 hm5C_associated_SNPs_15760 0 0 1 0 0 Endoplasmic reticulum 1 0.500231438239074 1 0.999537123521851 hm5C_site_17369 DeepMRMD:1;iRNA_m5C:0.999537123521851 17370 chr19 10225381 10225381 1 + G T BLCA 10225362 + 10225342 10225382 41 CCAAGCCCTGCCCCTCAATGCCACAGCCGCCCCTAAACCGT CCAAGCCCTGCCCCTCAATGCCACAGCCGCCCCTAAACCTT < 41bp 1 0.568767037714113 1 0.178724855184555 experiment 0.862465924571775 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control P2RY11;PPAN-P2RY11 ENSG00000130810;ENSG00000243207;ENSG00000244165 CDS Human other chr19:10225362 chr19:10225381 synonymous SNV . 0 40 hm5C_associated_SNPs_15761 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_17370 DeepMRMD:1;iRNA_m5C:0.999536712157815 17371 chr1 180064823 180064823 1 + G C BLCA 180064828 + 180064808 180064848 41 AAAAATAAGGCAGAAGAAACCATTGTACCTCTAATGGCAGA AAAAATAAGGCAGAACAAACCATTGTACCTCTAATGGCAGA < 41bp 1 0.0825283444884268 1 0.372365415096283 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP350 ENSG00000135837 CDS Human protein_coding chr1:180064828 chr1:180064823 nonsynonymous SNV 0.998 2 16 hm5C_associated_SNPs_15762 0 0 1 0 0 Nucleus 1 0.500231648039718 1 0.999536703920564 hm5C_site_17371 DeepMRMD:1;iRNA_m5C:0.999536703920564 17372 chr3 111667863 111667863 1 + G A BLCA 111667867 + 111667847 111667887 41 GTTTCCTGCTGATGCTGATGCTGTTGCCACTGAGCCTGCCA GTTTCCTGCTGATGCTAATGCTGTTGCCACTGAGCCTGCCA < 41bp 1 0.296470071196957 1 0.124471247196198 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111667867 chr3:111667863 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_15763 0 0 1 0 2 cytosol 1 0.500231630244001 1 0.999536739511998 hm5C_site_17372 DeepMRMD:1;iRNA_m5C:0.999536739511998 17373 chr12 56536120 56536120 1 + G C BLCA 56536133 + 56536113 56536153 41 CCTCTCAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC CCTCTCACAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC < 41bp 1 0.19936307769711 1 0.0612793564796448 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536133 chr12:56536120 nonsynonymous SNV 0.118 1 8 hm5C_associated_SNPs_15764 0 0 1 0 2 Endoplasmic reticulum 1 0.500231590730398 1 0.999536818539204 hm5C_site_17373 DeepMRMD:1;iRNA_m5C:0.999536818539204 17374 chr12 56536120 56536120 1 + G C BLCA 56536138 + 56536118 56536158 41 CAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCTGG CACAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCTGG < 41bp 1 0.413416995750067 1 0.367451995611191 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536138 chr12:56536120 nonsynonymous SNV 0.118 1 3 hm5C_associated_SNPs_15765 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643977777 1 0.999536712044447 hm5C_site_17374 DeepMRMD:1;iRNA_m5C:0.999536712044447 17375 chr3 52245348 52245348 1 + G C BLCA 52245356 + 52245336 52245376 41 CACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTG CACGAGTTCTCTCATTGACACCGTACGGTCCTATGCTGCTG < 41bp 1 0.3742789597365 1 0.0782708525657654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245356 chr3:52245348 synonymous SNV . 0 13 hm5C_associated_SNPs_15766 0 0 1 0 1 Cytosol 1 0.500231643778807 1 0.999536712442386 hm5C_site_17375 DeepMRMD:1;iRNA_m5C:0.999536712442386 17376 chr3 52245348 52245348 1 + G C BLCA 52245357 + 52245337 52245377 41 ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGG ACGAGTTCTCTCATTGACACCGTACGGTCCTATGCTGCTGG < 41bp 1 0.138958341229465 1 0.217686295509338 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245357 chr3:52245348 synonymous SNV . 0 12 hm5C_associated_SNPs_15767 0 0 1 0 1 Cytosol 1 0.500230615743374 1 0.999538768513252 hm5C_site_17376 DeepMRMD:1;iRNA_m5C:0.999538768513252 17377 chr3 52245348 52245348 1 + G C BLCA 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTCTCTCATTGACACCGTACGGTCCTATGCTGCTGGCTTC < 41bp 1 0.258338927787103 1 0.351582676172256 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245348 synonymous SNV . 0 8 hm5C_associated_SNPs_15768 0 0 1 0 1 Cytosol 1 0.50023164392085 1 0.9995367121583 hm5C_site_17377 DeepMRMD:1;iRNA_m5C:0.9995367121583 17378 chr16 67572595 67572595 1 + C T BLCA 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCG < 41bp 1 0.0748406094190974 1 0.194207727909088 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572595 nonsynonymous SNV 0.967 1 13 hm5C_associated_SNPs_15770 0 0 0 0 2 unknown 1 0.500231598043838 1 0.999536803912324 hm5C_site_17378 DeepMRMD:1;iRNA_m5C:0.999536803912324 17379 chr16 67572595 67572595 1 + C T BLCA 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCGC < 41bp 1 0.503943230420124 1 0.288354903459549 experiment 0.992113539159752 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572595 nonsynonymous SNV 0.967 1 12 hm5C_associated_SNPs_15771 0 0 0 0 2 unknown 1 0.5002316502511 1 0.9995366994978 hm5C_site_17379 DeepMRMD:1;iRNA_m5C:0.9995366994978 17380 chr16 67572595 67572595 1 + C T BLCA 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCGCT < 41bp 1 0.154809972110037 1 0.403689950704575 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572595 nonsynonymous SNV 0.967 1 11 hm5C_associated_SNPs_15772 0 0 0 0 2 unknown 1 0.500231643921607 1 0.999536712156785 hm5C_site_17380 DeepMRMD:1;iRNA_m5C:0.999536712156785 17381 chr16 67572595 67572595 1 + C T BLCA 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCTGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC < 41bp 1 0.490103496651865 1 0.333642840385437 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572595 nonsynonymous SNV 0.967 1 10 hm5C_associated_SNPs_15773 0 0 0 0 2 unknown 1 0.500231643967896 1 0.999536712064208 hm5C_site_17381 DeepMRMD:1;iRNA_m5C:0.999536712064208 17382 chr9 15453176 15453176 1 + A G BLCA 15453178 + 15453158 15453198 41 GTCATCAGGGAGACTGTGAACATGTCATTGTCATTACTGAC GTCATCAGGGAGACTGTGGACATGTCATTGTCATTACTGAC < 41bp 1 0.272785102244064 1 0.0722055733203888 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453178 chr9:15453176 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_15775 0 0 1 5 0 Ribosome 1 0.500231736880455 1 0.99953652623909 hm5C_site_17382 DeepMRMD:1;iRNA_m5C:0.99953652623909 17383 chr9 131196706 131196706 1 + A C BLCA 131196705 + 131196685 131196725 41 ACAGCTACCTCGGACGGAAGCAGGTGAACCCTGAGAAGGAG ACAGCTACCTCGGACGGAAGCCGGTGAACCCTGAGAAGGAG < 41bp 1 0.343511247987114 1 0.734553635120392 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131196705 chr9:131196706 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_15776 0 0 1 0 1 chromatin 1 0.500231552567649 0.530892729759216 0.999536894864702 hm5C_site_17383 DeepMRMD:0.530892729759216;iRNA_m5C:0.999536894864702 17384 chr10 103920550 103920550 1 + G C BLCA 103920534 + 103920514 103920554 41 AGCAGCTCTGATTCAGACAGCTCCAGCAGTGAGGAGGAGGA AGCAGCTCTGATTCAGACAGCTCCAGCAGTGAGGAGCAGGA < 41bp 1 0.684829897095831 1 0.647895574569702 experiment 0.630340205808338 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103920534 chr10:103920550 nonsynonymous SNV 0.991 2 37 hm5C_associated_SNPs_15778 0 0 1 0 0 Nucleus 1 0.50034942095327 0.704208850860596 0.999301158093461 hm5C_site_17384 DeepMRMD:0.704208850860596;iRNA_m5C:0.999301158093461 17385 chr1 39927577 39927577 1 + G C BLCA 39927585 + 39927565 39927605 41 CACCAAGTTAGAGATGACTGCTGTGGCTGACATTTTCGACC CACCAAGTTAGACATGACTGCTGTGGCTGACATTTTCGACC < 41bp 1 0.117272765003285 1 0.0390720963478088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39927585 chr1:39927577 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_15779 0 0 1 0 0 Endoplasmic reticulum 1 0.500227801539209 1 0.999544396921581 hm5C_site_17385 DeepMRMD:1;iRNA_m5C:0.999544396921581 17386 chr1 183096408 183096408 1 + G A BLCA 183096391 + 183096371 183096411 41 TCATCCTGAGGGATCTCTTTCACTTCAGTGCAAAGATGATG TCATCCTGAGGGATCTCTTTCACTTCAGTGCAAAGATAATG < 41bp 1 0.0812481936001477 1 0.120770424604416 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183096391 chr1:183096408 nonsynonymous SNV 0.983 0 38 hm5C_associated_SNPs_15780 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_17386 DeepMRMD:1;iRNA_m5C:0.999536712157811 17387 chr11 67353985 67353985 1 + C G BLCA 67353999 + 67353979 67354019 41 CAAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACC CAAGCTGAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACC < 41bp 1 0.0194946430100654 1 0.0722388327121735 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67353999 chr11:67353985 synonymous SNV . 0 7 hm5C_associated_SNPs_15781 0 0 1 0 0 Cytosol 1 0.500231643930208 1 0.999536712139584 hm5C_site_17387 DeepMRMD:1;iRNA_m5C:0.999536712139584 17388 chr11 67353985 67353985 1 + C G BLCA 67354000 + 67353980 67354020 41 AAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACCT AAGCTGAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACCT < 41bp 1 0.259342857756039 1 0.200131118297577 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67354000 chr11:67353985 synonymous SNV . 0 6 hm5C_associated_SNPs_15782 0 0 1 0 0 Cytosol 1 0.500231643921087 1 0.999536712157825 hm5C_site_17388 DeepMRMD:1;iRNA_m5C:0.999536712157825 17389 chr11 65831159 65831159 1 + C G BLCA 65831150 + 65831130 65831170 41 GTGCCTGCTGGAATGGAGACCCCTGAACTCATTGAGCTGAG GTGCCTGCTGGAATGGAGACCCCTGAACTGATTGAGCTGAG < 41bp 1 0.149781271574559 1 0.310024917125702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65831150 chr11:65831159 synonymous SNV . 0 30 hm5C_associated_SNPs_15783 0 0 1 0 2 Nucleus 1 0.500231503478249 1 0.999536993043502 hm5C_site_17389 DeepMRMD:1;iRNA_m5C:0.999536993043502 17390 chr11 67353995 67353995 1 + C T BLCA 67353999 + 67353979 67354019 41 CAAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACC CAAGCTCAAGGCCTTCTTGGCCTCCCCTGAGTACGTGAACC < 41bp 1 0.0215438656194056 1 0.163964211940765 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67353999 chr11:67353995 synonymous SNV . 0 17 hm5C_associated_SNPs_15784 0 0 1 0 0 Cytosol 1 0.500231643918924 1 0.999536712162152 hm5C_site_17390 DeepMRMD:1;iRNA_m5C:0.999536712162152 17391 chr11 67353995 67353995 1 + C T BLCA 67354000 + 67353980 67354020 41 AAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACCT AAGCTCAAGGCCTTCTTGGCCTCCCCTGAGTACGTGAACCT < 41bp 1 0.254306625436233 1 0.22543653845787 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67354000 chr11:67353995 synonymous SNV . 0 16 hm5C_associated_SNPs_15785 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17391 DeepMRMD:1;iRNA_m5C:0.999536712157815 17392 chr11 65392689 65392689 1 + T C BLCA 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGCGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG < 41bp 1 0.123606492014658 1 0.426356911659241 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392689 synonymous SNV . 0 5 hm5C_associated_SNPs_15786 0 0 1 0 2 Ribosome 1 0.50022582549398 1 0.99954834901204 hm5C_site_17392 DeepMRMD:1;iRNA_m5C:0.99954834901204 17393 chr2 32800276 32800276 1 + C T BLCA 32800281 + 32800261 32800301 41 CTGCTGGAATTGCTTCGGGCCATTGCTTCTTGTGCTGCCAT CTGCTGGAATTGCTTTGGGCCATTGCTTCTTGTGCTGCCAT < 41bp 1 0.0388585748874464 1 0.105528503656387 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32800281 chr2:32800276 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_15787 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157813 hm5C_site_17393 DeepMRMD:1;iRNA_m5C:0.999536712157813 17394 chr7 44100407 44100407 1 + G A BLCA 44100392 + 44100372 44100412 41 GCAGCCGACGACACAGAGATCTCCTTTGACCCCGAGAACCT GCAGCCGACGACACAGAGATCTCCTTTGACCCCGAAAACCT < 41bp 1 0.50726363991337 1 0.621905446052551 experiment 0.98547272017326 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44100392 chr7:44100407 synonymous SNV . 0 36 hm5C_associated_SNPs_15788 0 0 1 0 1 Ribosome 1 0.500231643918723 0.756189107894898 0.999536712162555 hm5C_site_17394 DeepMRMD:0.756189107894898;iRNA_m5C:0.999536712162555 17395 chr17 21731307 21731307 1 + G T BLCA 21731317 + 21731297 21731337 41 GCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAACATCC GCAGCTGGAATATGGCGGTACTCTTTCTGACTACAACATCC < 41bp 1 0.139695055617901 1 0.184940338134766 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731317 chr17:21731307 nonsynonymous SNV 0.988 0 11 hm5C_associated_SNPs_15789 0 0 1 0 0 Ribosome 1 0.50023140675608 1 0.999537186487841 hm5C_site_17395 DeepMRMD:1;iRNA_m5C:0.999537186487841 17396 chr8 73921215 73921215 1 + G A BLCA 73921233 + 73921213 73921253 41 CAGAGAGAAACGACGAGGAGCAGTTCGAATGCCAGGAACTG CAAAGAGAAACGACGAGGAGCAGTTCGAATGCCAGGAACTG < 41bp 1 0.28221754930498 1 0.070206880569458 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TERF1 ENSG00000147601 CDS Human protein_coding chr8:73921233 chr8:73921215 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_15790 0 0 1 0 0 Nucleus 1 0.500231643921098 1 0.999536712157804 hm5C_site_17396 DeepMRMD:1;iRNA_m5C:0.999536712157804 17397 chr15 99459920 99459920 1 + G A BLCA 99459934 + 99459914 99459954 41 CAGGAAGTATGCCGACGGCACCATCGACATTGAGGAGGTCA CAGGAAATATGCCGACGGCACCATCGACATTGAGGAGGTCA < 41bp 1 0.0118440691805829 1 0.0722474157810211 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99459934 chr15:99459920 synonymous SNV . 0 7 hm5C_associated_SNPs_15791 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920225 1 0.99953671215955 hm5C_site_17397 DeepMRMD:1;iRNA_m5C:0.99953671215955 17398 chr11 36422804 36422804 1 + C T BLCA 36422793 + 36422773 36422813 41 CCTTCCCCGATTCCAAGCAGCTCGGCAGGCTCTGCAGCTGA CCTTCCCCGATTCCAAGCAGCTCGGCAGGCTTTGCAGCTGA < 41bp 1 0.697840583014796 1 0.537299156188965 experiment 0.604318833970407 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRR5L ENSG00000135362 CDS Human protein_coding chr11:36422793 chr11:36422804 synonymous SNV . 0 32 hm5C_associated_SNPs_15792 0 0 0 0 1 Nucleus 1 0.500231643921092 0.92540168762207 0.999536712157815 hm5C_site_17398 DeepMRMD:0.92540168762207;iRNA_m5C:0.999536712157815 17399 chr1 29068983 29068983 1 + C T BLCA 29068982 + 29068962 29069002 41 CAGTCCCTCCATTGGCTTCTCCTATTCTTTGGGTGAAGCTG CAGTCCCTCCATTGGCTTCTCTTATTCTTTGGGTGAAGCTG < 41bp 1 0.123826368685678 1 0.102931261062622 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29068982 chr1:29068983 synonymous SNV . 0 22 hm5C_associated_SNPs_15793 0 0 1 0 1 Cytosol 1 0.500231645076691 1 0.999536709846619 hm5C_site_17399 DeepMRMD:1;iRNA_m5C:0.999536709846619 17400 chr1 29068983 29068983 1 + C T BLCA 29069000 + 29068980 29069020 41 CTCCTATTCTTTGGGTGAAGCTGCTTGGTCTACGGGGGGTG CTCTTATTCTTTGGGTGAAGCTGCTTGGTCTACGGGGGGTG < 41bp 1 0.498223257516102 1 0.188609570264816 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069000 chr1:29068983 synonymous SNV . 0 4 hm5C_associated_SNPs_15794 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17400 DeepMRMD:1;iRNA_m5C:0.999536712157815 17401 chr1 150131362 150131362 1 + G A BLCA 150131381 + 150131361 150131401 41 TGAGGAACCCCCAACCCCTGCCCTCCCCAACCCGGGGCAGC TAAGGAACCCCCAACCCCTGCCCTCCCCAACCCGGGGCAGC < 41bp 1 0.0459014901843762 1 0.0618362724781036 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHO1 ENSG00000023902 CDS Human protein_coding chr1:150131381 chr1:150131362 nonsynonymous SNV 0.019 0 2 hm5C_associated_SNPs_15795 0 0 0 0 0 Ribosome 1 0.500231655065745 1 0.999536689868509 hm5C_site_17401 DeepMRMD:1;iRNA_m5C:0.999536689868509 17402 chr19 34302357 34302357 1 + G A BLCA 34302343 + 34302323 34302363 41 AAGGCCCTCATCGAGGAGGTCTTCCCCGAGACCGGAGACGT AAGGCCCTCATCGAGGAGGTCTTCCCCGAGACCGAAGACGT < 41bp 1 0.0899228057997299 1 0.0396442711353302 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34302343 chr19:34302357 nonsynonymous SNV 0.922 3 35 hm5C_associated_SNPs_15796 0 0 1 0 0 Cytosol 1 0.500231643921113 1 0.999536712157774 hm5C_site_17402 DeepMRMD:1;iRNA_m5C:0.999536712157774 17403 chr5 14359563 14359563 1 + G C BLCA 14359551 + 14359531 14359571 41 TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTC TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGCAGGAGCTC < 41bp 1 0.0648473677666488 1 0.247942477464676 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359551 chr5:14359563 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_15797 0 0 1 0 2 Nucleus 1 0.5002316438186 1 0.999536712362799 hm5C_site_17403 DeepMRMD:1;iRNA_m5C:0.999536712362799 17404 chr5 14359563 14359563 1 + G C BLCA 14359555 + 14359535 14359575 41 GCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTCTTCC GCAGCTGGACGAGGCGCAGTCGCAGATGCAGGAGCTCTTCC < 41bp 1 0.573594775880504 1 0.833060622215271 experiment 0.852810448238992 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359555 chr5:14359563 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_15798 0 0 1 0 2 Nucleus 1 0.500231643583162 0.333878755569458 0.999536712833677 hm5C_site_17404 DeepMRMD:0.333878755569458;iRNA_m5C:0.999536712833677 17405 chr17 17080692 17080692 1 + G A BLCA 17080673 + 17080653 17080693 41 GAAGGAGCAGCTCAAGGCTGCAACGGAAGCACTGGGGGAGA GAAGGAGCAGCTCAAGGCTGCAACGGAAGCACTGGGGGAAA < 41bp 1 0.300717848354633 1 0.283570647239685 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17080673 chr17:17080692 synonymous SNV . 0 40 hm5C_associated_SNPs_15799 0 0 1 0 1 Cytosol 1 0.500231643921091 1 0.999536712157819 hm5C_site_17405 DeepMRMD:1;iRNA_m5C:0.999536712157819 17406 chr17 78704398 78704398 1 + G A BLCA 78704396 + 78704376 78704416 41 TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAGC TCCCTCTGTCCATATATGACCTACAGACGTGGATGGGCAGC < 41bp 1 0.320486274785701 1 0.0889462828636169 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPTOR ENSG00000141564 CDS Human protein_coding chr17:78704396 chr17:78704398 synonymous SNV . 0 23 hm5C_associated_SNPs_15800 0 0 1 0 1 Nucleus 1 0.500231712496179 1 0.999536575007643 hm5C_site_17406 DeepMRMD:1;iRNA_m5C:0.999536575007643 17407 chr1 37947335 37947335 1 + C T BLCA 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATTGTGGTTTCCAACGACACATACCGTGACCTCCAAGG < 41bp 1 0.275786174189391 1 0.273104608058929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947335 synonymous SNV . 0 6 hm5C_associated_SNPs_15801 0 0 0 0 0 Nucleus 1 0.500231642106011 1 0.999536715787978 hm5C_site_17407 DeepMRMD:1;iRNA_m5C:0.999536715787978 17408 chr1 37947335 37947335 1 + C T BLCA 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATTGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG < 41bp 1 0.140484723903446 1 0.0910221338272095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947335 synonymous SNV . 0 4 hm5C_associated_SNPs_15802 0 0 0 0 0 Nucleus 1 0.500231643920465 1 0.999536712159071 hm5C_site_17408 DeepMRMD:1;iRNA_m5C:0.999536712159071 17409 chr16 29828297 29828297 1 + G A BLCA 29828289 + 29828269 29828309 41 CCAGAGCGAAGAGGAGAGATCCGATGAGGAGCCGGAGGCCA CCAGAGCGAAGAGGAGAGATCCGATGAGAAGCCGGAGGCCA < 41bp 1 0.497288378321504 1 0.196414440870285 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828289 chr16:29828297 nonsynonymous SNV 0.997 1 29 hm5C_associated_SNPs_15803 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17409 DeepMRMD:1;iRNA_m5C:0.999536712157815 17410 chr16 29828297 29828297 1 + G A BLCA 29828307 + 29828287 29828327 41 ATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAGGAAA ATCCGATGAGAAGCCGGAGGCCAAAGAAGAGGAAGAGGAAA < 41bp 1 0.37853040273126 1 0.555944800376892 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828307 chr16:29828297 nonsynonymous SNV 0.997 1 11 hm5C_associated_SNPs_15806 0 0 1 0 1 Ribosome 1 0.500231643921092 0.888110399246216 0.999536712157815 hm5C_site_17410 DeepMRMD:0.888110399246216;iRNA_m5C:0.999536712157815 17411 chr19 7682676 7682676 1 + C G BLCA 7682691 + 7682671 7682711 41 ATCCTCTTTCGCGACTCGAGCTGCCAGTTCCGGGCGCTCTA ATCCTGTTTCGCGACTCGAGCTGCCAGTTCCGGGCGCTCTA < 41bp 1 0.26040615116115 1 0.0626251995563507 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682691 chr19:7682676 synonymous SNV . 0 6 hm5C_associated_SNPs_15807 0 0 0 0 1 nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_17411 DeepMRMD:1;iRNA_m5C:0.999536712157815 17412 chr13 113729380 113729380 1 + G A BLCA 113729386 + 113729366 113729406 41 AACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA AACAAGCACTACGCAGTAGACTCCATCCGCCCAAAGTGCCA < 41bp 1 0.685259864210347 1 0.88517689704895 experiment 0.629480271579306 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113729386 chr13:113729380 synonymous SNV . 0 15 hm5C_associated_SNPs_15808 0 0 1 0 1 Cytosol 1 0.500231648535401 0.2296462059021 0.999536702929198 hm5C_site_17412 DeepMRMD:0.2296462059021;iRNA_m5C:0.999536702929198 17413 chr5 43122240 43122240 1 + G C BLCA 43122248 + 43122228 43122268 41 AATGAACAGCGAGAGCAGGACCGGTTTACTGACATCACCCT AATGAACAGCGACAGCAGGACCGGTTTACTGACATCACCCT < 41bp 1 0.475642555405925 1 0.206282585859299 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43122248 chr5:43122240 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_15809 0 0 1 0 2 Cytosol 1 0.500170264432093 1 0.999659471135814 hm5C_site_17413 DeepMRMD:1;iRNA_m5C:0.999659471135814 17414 chr5 174156555 174156555 1 + C T BLCA 174156550 + 174156530 174156570 41 CCGCCTGTGGGACTCTATGCCACGCCAGTGGGATATGGCAT CCGCCTGTGGGACTCTATGCCACGCTAGTGGGATATGGCAT < 41bp 1 0.588789675167502 1 0.635337233543396 experiment 0.822420649664995 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSX2 ENSG00000120149 CDS Human protein_coding chr5:174156550 chr5:174156555 nonsynonymous SNV 0.973 5 26 hm5C_associated_SNPs_15810 0 0 0 0 0 exosome 1 0.500231643921092 0.729325532913208 0.999536712157815 hm5C_site_17414 DeepMRMD:0.729325532913208;iRNA_m5C:0.999536712157815 17415 chr10 76729438 76729438 1 + T G BLCA 76729423 + 76729403 76729443 41 TTTTTATTCTCATAGGACACCCATCCTGTTTGAAATTTTGT TTTTTATTCTCATAGGACACCCATCCTGTTTGAAAGTTTGT < 41bp 1 0.00286106105783415 1 0.0646888315677643 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KAT6B ENSG00000156650 CDS Human protein_coding chr10:76729423 chr10:76729438 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_15811 0 0 1 0 2 Nucleus 1 0.500231651344891 1 0.999536697310218 hm5C_site_17415 DeepMRMD:1;iRNA_m5C:0.999536697310218 17416 chr1 145293183 145293183 1 + C T BLCA 145293174 + 145293154 145293194 41 ATCAGAGTCTGAGCTACTGGCAGTGCTTTCAGCTCTGAGTT ATCAGAGTCTGAGCTACTGGCAGTGCTTTTAGCTCTGAGTT < 41bp 1 0.118747452966283 1 0.113604694604874 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NBPF25P ENSG00000255168 CDS Human other chr1:145293174 chr1:145293183 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_15814 0 0 0 0 2 unknown 1 0.50023164398753 1 0.99953671202494 hm5C_site_17416 DeepMRMD:1;iRNA_m5C:0.99953671202494 17417 chr20 37632410 37632410 1 + G T BLCA 37632421 + 37632401 37632441 41 GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACT GAAACTGTTTTGTCGATGCTCATCGAGCAGGCTCGAGCACT < 41bp 1 0.324544608612072 1 0.0628635883331299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632421 chr20:37632410 nonsynonymous SNV 0.372 1 10 hm5C_associated_SNPs_15815 0 0 1 0 1 Endoplasmic reticulum 1 0.500229512490712 1 0.999540975018576 hm5C_site_17417 DeepMRMD:1;iRNA_m5C:0.999540975018576 17418 chr5 32090187 32090187 1 + T C BLCA 32090169 + 32090149 32090189 41 AGAAACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCT AGAAACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCACCT < 41bp 1 0.0333718664218791 1 0.0660730302333832 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090169 chr5:32090187 synonymous SNV . 0 39 hm5C_associated_SNPs_15816 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17418 DeepMRMD:1;iRNA_m5C:0.999536712157815 17419 chr5 32090187 32090187 1 + T C BLCA 32090171 + 32090151 32090191 41 AAACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCTCT AAACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCACCTCT < 41bp 1 0.0614844951139616 1 0.217402249574661 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090171 chr5:32090187 synonymous SNV . 0 37 hm5C_associated_SNPs_15817 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17419 DeepMRMD:1;iRNA_m5C:0.999536712157815 17420 chr5 32090187 32090187 1 + T C BLCA 32090172 + 32090152 32090192 41 AACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCTCTA AACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCACCTCTA < 41bp 1 0.488802332851469 1 0.900157928466797 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090172 chr5:32090187 synonymous SNV . 0 36 hm5C_associated_SNPs_15818 0 0 0 0 0 chromatin 1 0.50023164396462 0.199684143066406 0.999536712070761 hm5C_site_17420 DeepMRMD:0.199684143066406;iRNA_m5C:0.999536712070761 17421 chr5 32090187 32090187 1 + T C BLCA 32090174 + 32090154 32090194 41 CAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCTCTACT CAGCATTCCAGGGGGCCCCTCGGGGGAGGACCACCTCTACT < 41bp 1 0.587007969086787 1 0.976766705513 experiment 0.825984061826426 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090174 chr5:32090187 synonymous SNV . 0 34 hm5C_associated_SNPs_15819 0 0 0 0 0 chromatin 1 0.50023164393478 0.0464665889739999 0.999536712130439 hm5C_site_17421 DeepMRMD:0.0464665889739999;iRNA_m5C:0.999536712130439 17422 chr11 120957741 120957741 1 + G C BLCA 120957753 + 120957733 120957773 41 CAGCTCTCGGGCATTGCATTCCTTTGGCATTAGGGATGGAG CAGCTCTCCGGCATTGCATTCCTTTGGCATTAGGGATGGAG < 41bp 1 0.0241778639074023 1 0.0932805836200714 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBCEL ENSG00000154114 CDS Human protein_coding chr11:120957753 chr11:120957741 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_15820 0 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17422 DeepMRMD:1;iRNA_m5C:0.999536712157815 17423 chr6 31929373 31929373 1 + A T BLCA 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTCTGGAGCAGTGGGCCATCCCTGTGGAC < 41bp 1 0.283508568115925 1 0.460815757513046 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929373 nonsynonymous SNV 0.965 0 16 hm5C_associated_SNPs_15821 0 0 1 0 2 chromatin 1 0.500231753535196 1 0.999536492929608 hm5C_site_17423 DeepMRMD:1;iRNA_m5C:0.999536492929608 17424 chr17 7592162 7592162 1 + G A BLCA 7592180 + 7592160 7592200 41 AGGAGCTACGGGAGGGGGACCCAGTTTCTCTCTCCACTCCC AGAAGCTACGGGAGGGGGACCCAGTTTCTCTCTCCACTCCC < 41bp 1 0.376862184016192 1 0.394205123186111 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7592180 chr17:7592162 nonsynonymous SNV 0.026 1 3 hm5C_associated_SNPs_15822 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17424 DeepMRMD:1;iRNA_m5C:0.999536712157815 17425 chr2 74328486 74328486 1 + C A BLCA 74328499 + 74328479 74328519 41 ACCTCGGCCTTGGCTGGGCCCAGCCTGACTGAGAAGCCGTG ACCTCGGACTTGGCTGGGCCCAGCCTGACTGAGAAGCCGTG < 41bp 1 0.24270683703696 1 0.0866883099079132 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74328499 chr2:74328486 nonsynonymous SNV 0.095 2 8 hm5C_associated_SNPs_15823 0 0 0 0 0 Cytosol 1 0.500232220259645 1 0.99953555948071 hm5C_site_17425 DeepMRMD:1;iRNA_m5C:0.99953555948071 17426 chr7 44735681 44735681 1 + G A BLCA 44735695 + 44735675 44735715 41 AAAGATGAGAAGATCTTGCACATTAAGCACTGGCTGGACTC AAAGATAAGAAGATCTTGCACATTAAGCACTGGCTGGACTC < 41bp 1 0.219482820506036 1 0.0235190689563751 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44735695 chr7:44735681 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_15824 0 0 1 0 2 Nucleus 1 0.500231643920527 1 0.999536712158945 hm5C_site_17426 DeepMRMD:1;iRNA_m5C:0.999536712158945 17427 chr9 130569504 130569504 1 + C T BLCA 130569510 + 130569490 130569530 41 TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA TGGCAGCTGTGTCTTCATGCCCCCCTACTTCCGCTTCCTGA < 41bp 1 0.0899149776930462 1 0.0510707795619965 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130569510 chr9:130569504 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_15825 0 0 1 0 2 Cytosol 1 0.500232544390263 1 0.999534911219473 hm5C_site_17427 DeepMRMD:1;iRNA_m5C:0.999534911219473 17428 chr4 7026936 7026936 1 + T C BLCA 7026933 + 7026913 7026953 41 AGGACCTGCCCGCCGAGGAGCTGTTTGCCTCCATCGCCACG AGGACCTGCCCGCCGAGGAGCTGCTTGCCTCCATCGCCACG < 41bp 1 0.396535706488239 1 0.107042014598846 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:7026933 chr4:7026936 nonsynonymous SNV 0.639 3 24 hm5C_associated_SNPs_15826 0 0 1 0 1 Cytosol 1 0.500234774223113 1 0.999530451553774 hm5C_site_17428 DeepMRMD:1;iRNA_m5C:0.999530451553774 17429 chr16 67314896 67314896 1 + G A BLCA 67314905 + 67314885 67314925 41 GCTGTACCTGCGAAGCATCCCCAGGTTTGAGGGAGGGGGTT GCTGTACCTGCAAAGCATCCCCAGGTTTGAGGGAGGGGGTT < 41bp 1 0.308109997715841 1 0.167500287294388 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67314905 chr16:67314896 nonsynonymous SNV 0.907 0 12 hm5C_associated_SNPs_15827 0 0 1 0 1 Cytosol 1 0.500231643919315 1 0.999536712161371 hm5C_site_17429 DeepMRMD:1;iRNA_m5C:0.999536712161371 17430 chr10 99216591 99216591 1 + G A BLCA 99216603 + 99216583 99216623 41 AATGGAATGAGCTGGGAGCCCCCTCCCTGGGTGACTGCTCA AATGGAATAAGCTGGGAGCCCCCTCCCTGGGTGACTGCTCA < 41bp 1 0.0958824502764381 1 0.102696895599365 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99216603 chr10:99216591 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_15828 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17430 DeepMRMD:1;iRNA_m5C:0.999536712157815 17431 chrX 153688732 153688732 1 + C T BLCA 153688731 + 153688711 153688751 41 TGCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGC TGCGGGCCCATGTCACGGGGCTCGTCGAGGACAACGCTCGC < 41bp 1 0.176529507147794 1 0.0981476008892059 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688731 chrX:153688732 nonsynonymous SNV 0.050 3 22 hm5C_associated_SNPs_15829 0 0 0 0 0 Endoplasmic reticulum 1 0.500231835615141 1 0.999536328769719 hm5C_site_17431 DeepMRMD:1;iRNA_m5C:0.999536328769719 17432 chrX 153688732 153688732 1 + C T BLCA 153688733 + 153688713 153688753 41 CGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCTG CGGGCCCATGTCACGGGGCTCGTCGAGGACAACGCTCGCTG < 41bp 1 0.315252281833421 1 0.184106171131134 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688733 chrX:153688732 nonsynonymous SNV 0.050 3 20 hm5C_associated_SNPs_15830 0 0 0 0 0 Endoplasmic reticulum 1 0.500231851610154 1 0.999536296779693 hm5C_site_17432 DeepMRMD:1;iRNA_m5C:0.999536296779693 17433 chr13 28197127 28197127 1 + G T BLCA 28197130 + 28197110 28197150 41 TTGTATTGCACGAGGAAGACCATACCCTAGGAAATTCTCTA TTGTATTGCACGAGGAATACCATACCCTAGGAAATTCTCTA < 41bp 1 0.0549899014031697 1 0.121714890003204 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1D ENSG00000186184 CDS Human protein_coding chr13:28197130 chr13:28197127 nonsynonymous SNV 0.998 4 18 hm5C_associated_SNPs_15831 0 0 1 0 0 Ribosome 1 0.500238282361779 1 0.999523435276442 hm5C_site_17433 DeepMRMD:1;iRNA_m5C:0.999523435276442 17434 chr1 16358235 16358235 1 + G A BLCA 16358254 + 16358234 16358274 41 TGAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG TAAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG < 41bp 1 0.415672822273736 1 0.430833905935287 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358254 chr1:16358235 nonsynonymous SNV 0.652 3 2 hm5C_associated_SNPs_15832 0 0 0 0 2 Endoplasmic reticulum 1 0.500231760089705 1 0.999536479820589 hm5C_site_17434 DeepMRMD:1;iRNA_m5C:0.999536479820589 17435 chr1 110129355 110129355 1 + G A BLCA 110129354 + 110129334 110129374 41 CTTTATTTCTTTTTCAGAACCGAATGCATGAAAGCATGAAA CTTTATTTCTTTTTCAGAACCAAATGCATGAAAGCATGAAA < 41bp 1 0.182551871313574 1 0.327545553445816 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNAI3 ENSG00000065135 CDS Human protein_coding chr1:110129354 chr1:110129355 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_15833 0 0 1 0 1 Cytosol 1 0.500231643935161 1 0.999536712129678 hm5C_site_17435 DeepMRMD:1;iRNA_m5C:0.999536712129678 17436 chr4 79399118 79399118 1 + C T BLCA 79399112 + 79399092 79399132 41 GAATTCACCCAGGCGAAGGTCATTATCAACGATACCGAGGA GAATTCACCCAGGCGAAGGTCATTATTAACGATACCGAGGA < 41bp 1 0.0966006531121772 1 0.0729880034923553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79399112 chr4:79399118 synonymous SNV . 0 27 hm5C_associated_SNPs_15834 0 0 1 0 1 Nucleus 1 0.500231644501621 1 0.999536710996758 hm5C_site_17436 DeepMRMD:1;iRNA_m5C:0.999536710996758 17437 chr20 19955675 19955675 1 + G C BLCA 19955679 + 19955659 19955699 41 CCAGACGAGCATGCCAGAAACAGTCAACCATAACAAACATG CCAGACGAGCATGCCACAAACAGTCAACCATAACAAACATG < 41bp 1 0.19576379763552 1 0.375846862792969 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19955679 chr20:19955675 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_15835 0 0 0 0 0 Nucleus 1 0.500231645737813 1 0.999536708524375 hm5C_site_17437 DeepMRMD:1;iRNA_m5C:0.999536708524375 17438 chr13 103286387 103286387 1 + G A BLCA 103286380 + 103286360 103286400 41 TAACTGGACACTGAGAGGGACGCAGCTGATGAATGGAACAT TAACTGGACACTGAGAGGGACGCAGCTAATGAATGGAACAT < 41bp 1 0.432432646956509 1 0.0993805527687073 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103286380 chr13:103286387 synonymous SNV . 0 28 hm5C_associated_SNPs_15836 0 0 1 0 2 Nucleus 1 0.500231643662824 1 0.999536712674352 hm5C_site_17438 DeepMRMD:1;iRNA_m5C:0.999536712674352 17439 chr19 48832670 48832670 1 + C T BLCA 48832653 + 48832633 48832673 41 TCATGGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTCATC TCATGGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTTATC < 41bp 1 0.452118348037622 1 0.0515997111797333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48832653 chr19:48832670 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_15837 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17439 DeepMRMD:1;iRNA_m5C:0.999536712157815 17440 chr6 151671189 151671189 1 + C T BLCA 151671207 + 151671187 151671227 41 CTCCGGACAGCCAGGAGGAGCAAAAGGGCGAGAGCTCTGCC CTTCGGACAGCCAGGAGGAGCAAAAGGGCGAGAGCTCTGCC < 41bp 1 0.661961616844487 1 0.671864151954651 experiment 0.676076766311026 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151671207 chr6:151671189 nonsynonymous SNV 0.153 0 3 hm5C_associated_SNPs_15838 0 0 1 0 0 Ribosome 1 0.500231643921092 0.656271696090698 0.999536712157815 hm5C_site_17440 DeepMRMD:0.656271696090698;iRNA_m5C:0.999536712157815 17441 chr2 202141587 202141587 1 + G A BLCA 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCAGGGATACTGTCTGATCATCAACAATCA < 41bp 1 0.231965525003329 1 0.101947814226151 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141587 nonsynonymous SNV 0.925 5 14 hm5C_associated_SNPs_15839 0 0 1 1 1 Nucleus 1 0.500282563498454 1 0.999434873003091 hm5C_site_17441 DeepMRMD:1;iRNA_m5C:0.999434873003091 17442 chr20 30915379 30915379 1 + G A BLCA 30915363 + 30915343 30915383 41 TGCAGTTCATTTCCAGGAACCAGCAGATGATGAAGCGGCCA TGCAGTTCATTTCCAGGAACCAGCAGATGATGAAGCAGCCA < 41bp 1 0.652487663431619 1 0.523473680019379 experiment 0.695024673136762 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30915363 chr20:30915379 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_15840 0 0 0 0 1 Ribosome 1 0.500228827665227 0.953052639961242 0.999542344669546 hm5C_site_17442 DeepMRMD:0.953052639961242;iRNA_m5C:0.999542344669546 17443 chr2 135180409 135180409 1 + C T BLCA 135180429 + 135180409 135180449 41 CGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGG TGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGG < 41bp 1 0.0759455283788534 1 0.0186198055744171 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135180429 chr2:135180409 synonymous SNV . 0 1 hm5C_associated_SNPs_15841 0 0 1 0 2 Ribosome 1 0.500231643457358 1 0.999536713085284 hm5C_site_17443 DeepMRMD:1;iRNA_m5C:0.999536713085284 17444 chr2 162091940 162091940 1 + G A BLCA 162091953 + 162091933 162091973 41 AGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCATTA AGTATGTAAATTCTGTCAAGCAGTTTTCCCACCATCCATTA < 41bp 1 0.45740469463462 1 0.0687772631645203 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANK ENSG00000136560 CDS Human protein_coding chr2:162091953 chr2:162091940 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_15842 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_17444 DeepMRMD:1;iRNA_m5C:0.999536712157815 17445 chr14 105936422 105936422 1 + C A BLCA 105936408 + 105936388 105936428 41 ACCTCTGCCCACAGGAAGATCCGCAAGCTGCTCTCATCCTC ACCTCTGCCCACAGGAAGATCCGCAAGCTGCTCTAATCCTC < 41bp 1 0.615735274667729 1 0.310953289270401 experiment 0.768529450664542 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936408 chr14:105936422 stopgain 0.920 0 35 hm5C_associated_SNPs_15843 0 0 1 0 1 Cytosol 1 0.50022624343416 1 0.999547513131679 hm5C_site_17445 DeepMRMD:1;iRNA_m5C:0.999547513131679 17446 chr22 19492958 19492958 1 + G A BLCA 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAACGAGGATGAGAAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.378541422761141 1 0.0961433053016663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492958 nonsynonymous SNV 0.122 1 16 hm5C_associated_SNPs_15844 0 0 1 0 2 Ribosome 1 0.500231643937594 1 0.999536712124812 hm5C_site_17446 DeepMRMD:1;iRNA_m5C:0.999536712124812 17447 chr3 120315375 120315375 1 + C G BLCA 120315381 + 120315361 120315401 41 ACGATCCCAACCGCCGAGGGCTCATCGTGAGTGTGGGGCCT ACGATCCCAACCGCGGAGGGCTCATCGTGAGTGTGGGGCCT < 41bp 1 0.483707463154367 1 0.0560665726661682 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB4 ENSG00000065518 CDS Human protein_coding chr3:120315381 chr3:120315375 nonsynonymous SNV 0.051 0 15 hm5C_associated_SNPs_15845 0 0 1 0 1 Ribosome 1 0.500231644282557 1 0.999536711434887 hm5C_site_17447 DeepMRMD:1;iRNA_m5C:0.999536711434887 17448 chr22 19492957 19492957 1 + G A BLCA 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAACGAGGATGAAGAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.391118830831495 1 0.109330862760544 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492957 synonymous SNV . 0 15 hm5C_associated_SNPs_15846 0 0 1 0 2 Ribosome 1 0.500231644004336 1 0.999536711991328 hm5C_site_17448 DeepMRMD:1;iRNA_m5C:0.999536711991328 17449 chr15 50789403 50789403 1 + C T BLCA 50789404 + 50789384 50789424 41 AGAAATCTGGAAGTTACCACCTGTGCTTTTAGTGCATCTGA AGAAATCTGGAAGTTACCATCTGTGCTTTTAGTGCATCTGA < 41bp 1 0.369821799783676 1 0.298350274562836 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50789404 chr15:50789403 nonsynonymous SNV 0.996 2 20 hm5C_associated_SNPs_15847 0 0 1 0 1 Ribosome 1 0.500231643919437 1 0.999536712161126 hm5C_site_17449 DeepMRMD:1;iRNA_m5C:0.999536712161126 17450 chr15 63354438 63354438 1 + G C BLCA 63354456 + 63354436 63354476 41 ATGAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG ATCAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG < 41bp 1 0.0681104172268937 1 0.131077110767365 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63354456 chr15:63354438 nonsynonymous SNV 0.995 5 3 hm5C_associated_SNPs_15848 0 0 1 0 2 Ribosome 1 0.500231643921132 1 0.999536712157735 hm5C_site_17450 DeepMRMD:1;iRNA_m5C:0.999536712157735 17451 chr7 87530130 87530130 1 + G A BLCA 87530114 + 87530094 87530134 41 CGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAG CGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTAAAAG < 41bp 1 0.140291332286269 1 0.290312856435776 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530114 chr7:87530130 synonymous SNV . 0 37 hm5C_associated_SNPs_15849 0 0 1 0 2 chromatin 1 0.500231735291745 1 0.99953652941651 hm5C_site_17451 DeepMRMD:1;iRNA_m5C:0.99953652941651 17452 chr7 87530130 87530130 1 + G A BLCA 87530119 + 87530099 87530139 41 AGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAG AGTATGGTGGAACCTCAATTCAACTCCAGTTAAAAGAGAAG < 41bp 1 0.271970609201776 1 0.575564980506897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530119 chr7:87530130 synonymous SNV . 0 32 hm5C_associated_SNPs_15850 0 0 1 0 2 chromatin 1 0.500231643921092 0.848870038986206 0.999536712157815 hm5C_site_17452 DeepMRMD:0.848870038986206;iRNA_m5C:0.999536712157815 17453 chr7 87530130 87530130 1 + G A BLCA 87530124 + 87530104 87530144 41 GGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAGAA GGTGGAACCTCAATTCAACTCCAGTTAAAAGAGAAGAAGAA < 41bp 1 0.325987975256505 1 0.695017576217651 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530124 chr7:87530130 synonymous SNV . 0 27 hm5C_associated_SNPs_15852 0 0 1 0 2 chromatin 1 0.500231681715655 0.609964847564698 0.999536636568691 hm5C_site_17453 DeepMRMD:0.609964847564698;iRNA_m5C:0.999536636568691 17454 chr22 19492955 19492955 1 + G A BLCA 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAACGAGGATAAGGAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.31772105774713 1 0.139867275953293 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492955 nonsynonymous SNV 0.114 1 13 hm5C_associated_SNPs_15853 0 0 1 0 2 Ribosome 1 0.500231643041312 1 0.999536713917376 hm5C_site_17454 DeepMRMD:1;iRNA_m5C:0.999536713917376 17455 chr13 114203816 114203816 1 + G C BLCA 114203825 + 114203805 114203845 41 TGCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCA TGCAATCACGACGTGTGTGCCCAGACCGGAGAGACGGTCCA < 41bp 1 0.658071850829267 1 0.172605097293854 experiment 0.683856298341467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203825 chr13:114203816 nonsynonymous SNV 0.022 1 12 hm5C_associated_SNPs_15854 0 0 0 0 1 Ribosome 1 0.500231633958624 1 0.999536732082752 hm5C_site_17455 DeepMRMD:1;iRNA_m5C:0.999536732082752 17456 chr13 114203816 114203816 1 + G C BLCA 114203826 + 114203806 114203846 41 GCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG GCAATCACGACGTGTGTGCCCAGACCGGAGAGACGGTCCAG < 41bp 1 0.60251570044658 1 0.136995702981949 experiment 0.79496859910684 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203826 chr13:114203816 nonsynonymous SNV 0.022 1 11 hm5C_associated_SNPs_15855 0 0 0 0 1 Ribosome 1 0.500231027708017 1 0.999537944583966 hm5C_site_17456 DeepMRMD:1;iRNA_m5C:0.999537944583966 17457 chr16 2577863 2577863 1 + C T BLCA 2577853 + 2577833 2577873 41 CACCTCCGCTCCTTCGAGGCCGATGCCTTCCAGGACTTGCT CACCTCCGCTCCTTCGAGGCCGATGCCTTCTAGGACTTGCT < 41bp 1 0.0942658306475221 1 0.107930779457092 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577853 chr16:2577863 stopgain 0.571 0 31 hm5C_associated_SNPs_15856 0 0 1 0 1 Ribosome 1 0.500230269821167 1 0.999539460357665 hm5C_site_17457 DeepMRMD:1;iRNA_m5C:0.999539460357665 17458 chr6 29911264 29911264 1 + G A BLCA 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGATGGCACGTACGTGGAGTGGCTCCGCAGATA < 41bp 1 0.604376856359433 1 0.334472835063934 experiment 0.791246287281134 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911264 nonsynonymous SNV 0.002 3 20 hm5C_associated_SNPs_15857 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920028 1 0.999536712159945 hm5C_site_17458 DeepMRMD:1;iRNA_m5C:0.999536712159945 17459 chr6 29911264 29911264 1 + G A BLCA 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGTACGTGGAGTGGCTCCGCAGATACCTGGAGAACGG < 41bp 1 0.530873558464868 1 0.10897770524025 experiment 0.938252883070264 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911264 nonsynonymous SNV 0.002 3 8 hm5C_associated_SNPs_15858 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392111 1 0.999536712157781 hm5C_site_17459 DeepMRMD:1;iRNA_m5C:0.999536712157781 17460 chr6 29911264 29911264 1 + G A BLCA 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGTACGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG < 41bp 1 0.449044924160496 1 0.425369679927826 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911264 nonsynonymous SNV 0.002 3 7 hm5C_associated_SNPs_15859 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_17460 DeepMRMD:1;iRNA_m5C:0.999536712157814 17461 chrX 105921470 105921470 1 + T C BLCA 105921458 + 105921438 105921478 41 AAAGTGGAAGTCTATTTGCACAAGATTTATAGTCCAGAGAA AAAGTGGAAGTCTATTTGCACAAGATTTATAGCCCAGAGAA < 41bp 1 0.678556080120489 1 0.485595643520355 experiment 0.642887839759021 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105921458 chrX:105921470 synonymous SNV . 0 33 hm5C_associated_SNPs_15860 0 0 1 0 0 nucleus 1 0.500231644029798 1 0.999536711940405 hm5C_site_17461 DeepMRMD:1;iRNA_m5C:0.999536711940405 17462 chr12 56531992 56531992 1 + C G BLCA 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATGTGGCCGCCTGCACTTGCGCCTGGAGCG < 41bp 1 0.0656297081013757 1 0.699091017246246 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56531992 nonsynonymous SNV 0.994 4 14 hm5C_associated_SNPs_15861 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920933 0.601817965507508 0.999536712158134 hm5C_site_17462 DeepMRMD:0.601817965507508;iRNA_m5C:0.999536712158134 17463 chr12 56531992 56531992 1 + C G BLCA 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATGTGGCCGCCTGCACTTGCGCCTGGAGCGT < 41bp 1 0.599953378904983 1 0.716411292552948 experiment 0.800093242190033 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56531992 nonsynonymous SNV 0.994 4 13 hm5C_associated_SNPs_15862 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643129006 0.567177414894104 0.999536713741987 hm5C_site_17463 DeepMRMD:0.567177414894104;iRNA_m5C:0.999536713741987 17464 chr12 104327828 104327828 1 + C T BLCA 104327808 + 104327788 104327828 41 AGAGAAGAGTTGGTTAAAAACCTTGGTACCATAGCCAAATC AGAGAAGAGTTGGTTAAAAACCTTGGTACCATAGCCAAATT < 41bp 1 0.222499685844116 1 0.0853283405303955 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104327808 chr12:104327828 nonsynonymous SNV 1.000 5 41 hm5C_associated_SNPs_15863 0 0 1 0 0 Nucleus 1 0.50023165400776 1 0.999536691984479 hm5C_site_17464 DeepMRMD:1;iRNA_m5C:0.999536691984479 17465 chr16 22337220 22337220 1 + G A BLCA 22337234 + 22337214 22337254 41 GTGTGCGGATCAAGGAGGAGCCCGTGAGCGAGGAGGGCGAG GTGTGCAGATCAAGGAGGAGCCCGTGAGCGAGGAGGGCGAG < 41bp 1 0.531593648985581 1 0.202607780694962 experiment 0.936812702028838 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337234 chr16:22337220 nonsynonymous SNV 0.900 0 7 hm5C_associated_SNPs_15864 0 0 1 0 0 Ribosome 1 0.500231643920985 1 0.99953671215803 hm5C_site_17465 DeepMRMD:1;iRNA_m5C:0.99953671215803 17466 chr16 22337220 22337220 1 + G A BLCA 22337235 + 22337215 22337255 41 TGTGCGGATCAAGGAGGAGCCCGTGAGCGAGGAGGGCGAGG TGTGCAGATCAAGGAGGAGCCCGTGAGCGAGGAGGGCGAGG < 41bp 1 0.336294464377755 1 0.340906858444214 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337235 chr16:22337220 nonsynonymous SNV 0.900 0 6 hm5C_associated_SNPs_15865 0 0 1 0 0 Ribosome 1 0.500231644014821 1 0.999536711970358 hm5C_site_17466 DeepMRMD:1;iRNA_m5C:0.999536711970358 17467 chr16 1551483 1551483 1 + C T BLCA 1551467 + 1551447 1551487 41 GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCG GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGATGGCG < 41bp 1 0.306542449292005 1 0.250790596008301 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551467 chr16:1551483 synonymous SNV . 0 37 hm5C_associated_SNPs_15866 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17467 DeepMRMD:1;iRNA_m5C:0.999536712157815 17468 chr11 4091330 4091330 1 + G C BLCA 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTCCCTATATCCAGAACCGTTACTCCAAGGA < 41bp 1 0.634927517762878 1 0.738671839237213 experiment 0.730144964474243 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091330 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_15867 0 0 1 0 1 Endoplasmic reticulum 1 0.500231557915511 0.522656321525574 0.999536884168979 hm5C_site_17468 DeepMRMD:0.522656321525574;iRNA_m5C:0.999536884168979 17469 chr3 51673450 51673450 1 + G T BLCA 51673466 + 51673446 51673486 41 CCCTGATGTGCTGTATGAAGCCCTTCAGAAGGAGAGCTTGG CCCTTATGTGCTGTATGAAGCCCTTCAGAAGGAGAGCTTGG < 41bp 1 0.192283676364732 1 0.0738855004310608 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51673466 chr3:51673450 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_15868 0 0 1 0 1 chromatin 1 0.500231641053677 1 0.999536717892645 hm5C_site_17469 DeepMRMD:1;iRNA_m5C:0.999536717892645 17470 chr11 65273165 65273165 1 + G T BLCA 65273153 + 65273133 65273173 41 GGTAACGATGGTGTCGAGGTCTTTGGTGGGTTGAACTATGT GGTAACGATGGTGTCGAGGTCTTTGGTGGGTTTAACTATGT < 41bp 1 0.464480809025555 1 0.250134140253067 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273153 chr11:65273165 . . 0 33 hm5C_associated_SNPs_15869 0 0 1 0 0 unknown 1 0.500231549493392 1 0.999536901013216 hm5C_site_17470 DeepMRMD:1;iRNA_m5C:0.999536901013216 17471 chr11 65273165 65273165 1 + G T BLCA 65273168 + 65273148 65273188 41 GAGGTCTTTGGTGGGTTGAACTATGTTAGAAAAGGCCATTA GAGGTCTTTGGTGGGTTTAACTATGTTAGAAAAGGCCATTA < 41bp 1 0.663603864731991 1 0.383654445409775 experiment 0.672792270536018 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273168 chr11:65273165 . . 0 18 hm5C_associated_SNPs_15870 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17471 DeepMRMD:1;iRNA_m5C:0.999536712157815 17472 chr14 89336504 89336504 1 + C G BLCA 89336501 + 89336481 89336521 41 GCATGCATTGGAAGCAACCACTTCTATTCTGATCAGCCAGA GCATGCATTGGAAGCAACCACTTGTATTCTGATCAGCCAGA < 41bp 1 0.402821941191751 1 0.0703953504562378 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC8 ENSG00000165533 CDS Human protein_coding chr14:89336501 chr14:89336504 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_15871 0 0 1 0 1 Nucleus 1 0.500231457173402 1 0.999537085653195 hm5C_site_17472 DeepMRMD:1;iRNA_m5C:0.999537085653195 17473 chr11 65273619 65273619 1 + G T BLCA 65273607 + 65273587 65273627 41 AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTT AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGTACGGGGTT < 41bp 1 0.433617102818727 1 0.479976177215576 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273607 chr11:65273619 . . 0 33 hm5C_associated_SNPs_15872 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17473 DeepMRMD:1;iRNA_m5C:0.999536712157815 17474 chr11 65273619 65273619 1 + G T BLCA 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGGCACTCCTGGTTTCCAGTACGGGGTTC < 41bp 1 0.616089399986173 1 0.421976268291473 experiment 0.767821200027654 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273619 . . 0 32 hm5C_associated_SNPs_15873 0 0 1 1 0 unknown 1 0.500231643920821 1 0.999536712158359 hm5C_site_17474 DeepMRMD:1;iRNA_m5C:0.999536712158359 17475 chr19 50881884 50881884 1 + C A BLCA 50881902 + 50881882 50881922 41 CTCAGCCTCTGGGCCTGGGGCTTCCCCTGGTGGATCTGAGG CTAAGCCTCTGGGCCTGGGGCTTCCCCTGGTGGATCTGAGG < 41bp 1 0.0847961641965265 1 0.108670294284821 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881902 chr19:50881884 stopgain 0.458 0 3 hm5C_associated_SNPs_15874 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17475 DeepMRMD:1;iRNA_m5C:0.999536712157815 17476 chr1 153713793 153713793 1 + C A BLCA 153713778 + 153713758 153713798 41 CAGGTGTGCAAAGGCCTCCCCCAGCATGAAGAAATCTGCCT CAGGTGTGCAAAGGCCTCCCCCAGCATGAAGAAATATGCCT < 41bp 1 0.125587490288586 1 0.257445573806763 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153713778 chr1:153713793 synonymous SNV . 0 36 hm5C_associated_SNPs_15875 0 0 1 0 2 chromatin 1 0.500231630885874 1 0.999536738228253 hm5C_site_17476 DeepMRMD:1;iRNA_m5C:0.999536738228253 17477 chr22 40662821 40662821 1 + C T BLCA 40662825 + 40662805 40662845 41 CTGGAGCAGCGGGCCACAGCCTGCAACACCTAAGGATGAGG CTGGAGCAGCGGGCCATAGCCTGCAACACCTAAGGATGAGG < 41bp 1 0.462698843805518 1 0.842790007591248 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40662825 chr22:40662821 stopgain 0.716 0 17 hm5C_associated_SNPs_15876 0 0 1 0 0 Cytosol 1 0.500231657674356 0.314419984817504 0.999536684651288 hm5C_site_17477 DeepMRMD:0.314419984817504;iRNA_m5C:0.999536684651288 17478 chr11 65273350 65273350 1 + G T BLCA 65273330 + 65273310 65273350 41 ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGGAG ACTGTAATGCTGGGTGGGAACATGTAACTTGTAGACTGGAT < 41bp 1 0.69405033121915 1 0.382556438446045 experiment 0.6118993375617 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273330 chr11:65273350 . . 0 41 hm5C_associated_SNPs_15877 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17478 DeepMRMD:1;iRNA_m5C:0.999536712157815 17479 chr11 65273350 65273350 1 + G T BLCA 65273337 + 65273317 65273357 41 TGCTGGGTGGGAACATGTAACTTGTAGACTGGAGAAGATAG TGCTGGGTGGGAACATGTAACTTGTAGACTGGATAAGATAG < 41bp 1 0.699653400767593 1 0.114173710346222 experiment 0.600693198464815 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273337 chr11:65273350 . . 0 34 hm5C_associated_SNPs_15878 0 0 1 3 0 unknown 1 0.500231675518074 1 0.999536648963853 hm5C_site_17479 DeepMRMD:1;iRNA_m5C:0.999536648963853 17480 chr1 87208005 87208005 1 + C A BLCA 87208023 + 87208003 87208043 41 ATCACCTCTCCTTCCAACCTCAGTGACCTTAAGGAGTGTAG ATAACCTCTCCTTCCAACCTCAGTGACCTTAAGGAGTGTAG < 41bp 1 0.290664834732259 1 0.199993252754211 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87208023 chr1:87208005 synonymous SNV . 0 3 hm5C_associated_SNPs_15879 0 0 1 0 0 Ribosome 1 0.50023164379034 1 0.99953671241932 hm5C_site_17480 DeepMRMD:1;iRNA_m5C:0.99953671241932 17481 chr10 73111520 73111520 1 + G C BLCA 73111516 + 73111496 73111536 41 CGGCATGACCGGCTCCTTTCCTATGAGGAACTCCCAGGCAC CGGCATGACCGGCTCCTTTCCTATCAGGAACTCCCAGGCAC < 41bp 1 0.260680317260144 1 0.0694341063499451 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73111516 chr10:73111520 nonsynonymous SNV 0.984 1 25 hm5C_associated_SNPs_15880 0 0 0 0 1 chromatin 1 0.500231643908212 1 0.999536712183575 hm5C_site_17481 DeepMRMD:1;iRNA_m5C:0.999536712183575 17482 chr2 97464926 97464926 1 + G A BLCA 97464916 + 97464896 97464936 41 AGTACTACGCCCGCCATTACCTGTACACCCGAAATAAGCCG AGTACTACGCCCGCCATTACCTGTACACCCAAAATAAGCCG < 41bp 1 0.648265494784293 1 0.769059181213379 experiment 0.703469010431415 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97464916 chr2:97464926 nonsynonymous SNV 0.995 3 31 hm5C_associated_SNPs_15881 0 0 0 0 1 chromatin 1 0.500231643980841 0.461881637573242 0.999536712038318 hm5C_site_17482 DeepMRMD:0.461881637573242;iRNA_m5C:0.999536712038318 17483 chr1 65871755 65871755 1 + C T BLCA 65871740 + 65871720 65871760 41 CCCCACTCCTCTCCCCAGAACCGACCCAACTACAACGTGAG CCCCACTCCTCTCCCCAGAACCGACCCAACTACAATGTGAG < 41bp 1 0.0473732700862266 1 0.081075131893158 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871740 chr1:65871755 synonymous SNV . 0 36 hm5C_associated_SNPs_15882 0 0 0 0 1 Cytosol 1 0.500231643921021 1 0.999536712157957 hm5C_site_17483 DeepMRMD:1;iRNA_m5C:0.999536712157957 17484 chr12 53663123 53663123 1 + C T BLCA 53663114 + 53663094 53663134 41 CCCTCCATGCCTGCTTGGTGCAGTGCTCTCGCGAGGCTGCT CCCTCCATGCCTGCTTGGTGCAGTGCTCTTGCGAGGCTGCT < 41bp 1 0.330232848153699 1 0.158063799142838 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663114 chr12:53663123 nonsynonymous SNV 0.913 1 30 hm5C_associated_SNPs_15883 0 0 1 0 0 Nucleus 1 0.500231630852733 1 0.999536738294534 hm5C_site_17484 DeepMRMD:1;iRNA_m5C:0.999536738294534 17485 chr16 81078057 81078057 1 + G A BLCA 81078069 + 81078049 81078089 41 CTCAAACTGAAGAGAGTGAACTTAGCACCATGACCACCGAG CTCAAACTAAAGAGAGTGAACTTAGCACCATGACCACCGAG < 41bp 1 0.293748179231166 1 0.259461939334869 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81078069 chr16:81078057 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_15884 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_17485 DeepMRMD:1;iRNA_m5C:0.999536712157815 17486 chr13 113487179 113487179 1 + C T BLCA 113487177 + 113487157 113487197 41 GAACTGCTTTTTTATAGGAGCGCGAGGAGCTGTTTTTCCGG GAACTGCTTTTTTATAGGAGCGTGAGGAGCTGTTTTTCCGG < 41bp 1 0.384798965841986 1 0.405620753765106 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487177 chr13:113487179 synonymous SNV . 0 23 hm5C_associated_SNPs_15885 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17486 DeepMRMD:1;iRNA_m5C:0.999536712157815 17487 chr14 102466402 102466402 1 + G C BLCA 102466397 + 102466377 102466417 41 AAGTTTGGTAGGCTGAAGGACGACAGAGAGAAGTGTGCAAA AAGTTTGGTAGGCTGAAGGACGACACAGAGAAGTGTGCAAA < 41bp 1 0.225085861674867 1 0.219928681850433 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466397 chr14:102466402 nonsynonymous SNV 0.976 1 26 hm5C_associated_SNPs_15886 0 0 1 0 2 Cytosol 1 0.50023163960613 1 0.99953672078774 hm5C_site_17487 DeepMRMD:1;iRNA_m5C:0.99953672078774 17488 chr14 102466402 102466402 1 + G C BLCA 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGACGACACAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG < 41bp 1 0.174640720183211 1 0.606931746006012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466402 nonsynonymous SNV 0.976 1 9 hm5C_associated_SNPs_15887 0 0 1 0 2 Cytosol 1 0.500231643888285 0.786136507987976 0.99953671222343 hm5C_site_17488 DeepMRMD:0.786136507987976;iRNA_m5C:0.99953671222343 17489 chr7 66262459 66262459 1 + G A BLCA 66262475 + 66262455 66262495 41 TGATGAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGT TGATAAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGT < 41bp 1 0.0140075260646658 1 0.125457316637039 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66262475 chr7:66262459 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_15888 0 0 0 0 2 Cytosol 1 0.500232351111034 1 0.999535297777932 hm5C_site_17489 DeepMRMD:1;iRNA_m5C:0.999535297777932 17490 chr7 66262459 66262459 1 + G A BLCA 66262476 + 66262456 66262496 41 GATGAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGTA GATAAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGTA < 41bp 1 0.0486903002860411 1 0.293330371379852 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66262476 chr7:66262459 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_15889 0 0 0 0 2 Cytosol 1 0.500187081105068 1 0.999625837789864 hm5C_site_17490 DeepMRMD:1;iRNA_m5C:0.999625837789864 17491 chr20 25228820 25228820 1 + G A BLCA 25228804 + 25228784 25228824 41 CCATCTCTTTTCCTCCGCCTCCGCCGGCGCGATGGCGAAGC CCATCTCTTTTCCTCCGCCTCCGCCGGCGCGATGGCAAAGC < 41bp 1 0.387484918904514 1 0.388119339942932 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PYGB ENSG00000100994 CDS Human protein_coding chr20:25228804 chr20:25228820 synonymous SNV . 0 37 hm5C_associated_SNPs_15890 0 0 1 0 0 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_17491 DeepMRMD:1;iRNA_m5C:0.999536712157812 17492 chr17 37360850 37360850 1 + G C BLCA 37360846 + 37360826 37360866 41 CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCA CCGTGAAGAGCGCCTCCAGGCCAACAAGGAGGAGATCATCA < 41bp 1 0.135292852043701 1 0.0968330502510071 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360846 chr17:37360850 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_15892 0 0 1 0 1 chromatin 1 0.500231643921258 1 0.999536712157484 hm5C_site_17492 DeepMRMD:1;iRNA_m5C:0.999536712157484 17493 chr17 37360850 37360850 1 + G C BLCA 37360862 + 37360842 37360882 41 CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA CAGGCCAACAAGGAGGAGATCATCAAGACTTTATCCAAGGA < 41bp 1 0.443549822769708 1 0.126711755990982 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360862 chr17:37360850 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_15893 0 0 1 0 1 chromatin 1 0.500231643436441 1 0.999536713127119 hm5C_site_17493 DeepMRMD:1;iRNA_m5C:0.999536713127119 17494 chr11 209946 209946 1 + C T BLCA 209927 + 209907 209947 41 GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCC GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATTC < 41bp 1 0.608869494550273 1 0.122648984193802 experiment 0.782261010899453 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209927 chr11:209946 synonymous SNV . 0 40 hm5C_associated_SNPs_15895 0 0 1 0 1 Ribosome 1 0.500233592138182 1 0.999532815723636 hm5C_site_17494 DeepMRMD:1;iRNA_m5C:0.999532815723636 17495 chr19 45490661 45490661 1 + G A BLCA 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG TGATGAGTTGTACGAGCAGTCAGATAAGGAGCAGGACTCGG < 41bp 1 0.606328723303943 1 0.461503803730011 experiment 0.787342553392114 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490661 nonsynonymous SNV 0.998 2 26 hm5C_associated_SNPs_15896 0 0 1 0 1 Cytosol 1 0.500231643973473 1 0.999536712053053 hm5C_site_17495 DeepMRMD:1;iRNA_m5C:0.999536712053053 17496 chr22 18979420 18979420 1 + C T BLCA 18979435 + 18979415 18979455 41 AGGCCCGTCCTGGTGGAGTTCACCCTGCTGGAGATGGAGAA AGGCCTGTCCTGGTGGAGTTCACCCTGCTGGAGATGGAGAA < 41bp 1 0.255142952814818 1 0.258341133594513 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979435 chr22:18979420 . . 0 6 hm5C_associated_SNPs_15897 0 0 1 1 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17496 DeepMRMD:1;iRNA_m5C:0.999536712157815 17497 chr11 61252187 61252187 1 + G C BLCA 61252171 + 61252151 61252191 41 TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCCAGGAGCA TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCCAGCAGCA < 41bp 1 0.105975333637273 1 0.028741329908371 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252171 chr11:61252187 nonsynonymous SNV 0.952 0 37 hm5C_associated_SNPs_15898 0 0 0 0 1 exosome 1 0.500231643898533 1 0.999536712202935 hm5C_site_17497 DeepMRMD:1;iRNA_m5C:0.999536712202935 17498 chr2 204078320 204078320 1 + C G BLCA 204078310 + 204078290 204078330 41 GTTTGTGTCACCAAAGAATACAGCCATATTCTTGTAGGTTT GTTTGTGTCACCAAAGAATACAGCCATATTGTTGTAGGTTT < 41bp 1 0.258117381866941 1 0.110039502382278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204078310 chr2:204078320 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_15899 0 0 1 0 2 chromatin 1 0.500231643915908 1 0.999536712168185 hm5C_site_17498 DeepMRMD:1;iRNA_m5C:0.999536712168185 17499 chr17 38318321 38318321 1 + G A BLCA 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAAAT < 41bp 1 0.123526565794653 1 0.131465137004852 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318321 nonsynonymous SNV 0.995 4 39 hm5C_associated_SNPs_15900 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17499 DeepMRMD:1;iRNA_m5C:0.999536712157815 17500 chr1 173454533 173454533 1 + G A BLCA 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAAAAAAGTTACCTTTTCCCATCATCGATGATA < 41bp 1 0.0710290653637307 1 0.019072026014328 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454533 nonsynonymous SNV 0.992 1 11 hm5C_associated_SNPs_15901 0 0 1 0 1 Ribosome 1 0.500231644598827 1 0.999536710802347 hm5C_site_17500 DeepMRMD:1;iRNA_m5C:0.999536710802347 17501 chr3 124456779 124456779 1 + C G BLCA 124456785 + 124456765 124456805 41 GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGCC GCACCCAAAGAACTGAGCTTCGGTGCACGTGCAGAGCTGCC < 41bp 1 0.382679621879355 1 0.838840067386627 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UMPS ENSG00000114491 CDS Human protein_coding chr3:124456785 chr3:124456779 nonsynonymous SNV . 0 15 hm5C_associated_SNPs_15902 0 0 1 0 1 Ribosome 1 0.500231643921092 0.322319865226746 0.999536712157815 hm5C_site_17501 DeepMRMD:0.322319865226746;iRNA_m5C:0.999536712157815 17502 chr4 57179512 57179512 1 + G A BLCA 57179501 + 57179481 57179521 41 AGCACAAGCTGGCTGTTAAGCCAAAAAAACAGAGGGTGTCA AGCACAAGCTGGCTGTTAAGCCAAAAAAACAAAGGGTGTCA < 41bp 1 0.435164512589285 1 0.507655024528503 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57179501 chr4:57179512 synonymous SNV . 0 32 hm5C_associated_SNPs_15903 0 0 0 0 1 cytosol 1 0.500231643933302 0.984689950942994 0.999536712133396 hm5C_site_17502 DeepMRMD:0.984689950942994;iRNA_m5C:0.999536712133396 17503 chr12 56663988 56663988 1 + G C BLCA 56663999 + 56663979 56664019 41 ATGTTTTTTGATGAGGTTGTCAAACAGAATGTTGCTGCCTT ATGTTTTTTCATGAGGTTGTCAAACAGAATGTTGCTGCCTT < 41bp 1 0.343785761401619 1 0.489324659109116 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ10A ENSG00000135469 CDS Human protein_coding chr12:56663999 chr12:56663988 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_15904 0 0 1 0 1 chromatin 1 0.500231643129644 1 0.999536713740712 hm5C_site_17503 DeepMRMD:1;iRNA_m5C:0.999536713740712 17504 chr9 132630421 132630421 1 + G C BLCA 132630419 + 132630399 132630439 41 ATGAGAAACGGGAGGGTGACCGGAGCCCATCAGAAGATGAG ATGAGAAACGGGAGGGTGACCGCAGCCCATCAGAAGATGAG < 41bp 1 0.396885762299679 1 0.322519868612289 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132630419 chr9:132630421 synonymous SNV . 0 23 hm5C_associated_SNPs_15906 0 0 0 0 0 chromatin 1 0.50023164392106 1 0.999536712157881 hm5C_site_17504 DeepMRMD:1;iRNA_m5C:0.999536712157881 17505 chr1 145509174 145509174 1 + G A BLCA 145509172 + 145509152 145509192 41 TTCTTTTTCCCTAGAGGTGGCCGAAGACGCAGCAGAAGTCC TTCTTTTTCCCTAGAGGTGGCCAAAGACGCAGCAGAAGTCC < 41bp 1 0.147341168132655 1 0.393438577651978 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509172 chr1:145509174 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_15907 0 0 1 0 1 Ribosome 1 0.500231643921018 1 0.999536712157964 hm5C_site_17505 DeepMRMD:1;iRNA_m5C:0.999536712157964 17506 chr1 145509174 145509174 1 + G A BLCA 145509191 + 145509171 145509211 41 GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA GCCAAAGACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA < 41bp 1 0.336193745585925 1 0.337057650089264 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509191 chr1:145509174 nonsynonymous SNV . 0 4 hm5C_associated_SNPs_15908 0 0 1 0 1 Ribosome 1 0.500231638711296 1 0.999536722577408 hm5C_site_17506 DeepMRMD:1;iRNA_m5C:0.999536722577408 17507 chr1 22307603 22307603 1 + C T BLCA 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCAT < 41bp 1 0.199527152687058 1 0.107224762439728 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307603 synonymous SNV . 0 36 hm5C_associated_SNPs_15910 0 0 0 0 2 unknown 1 0.500232354876902 1 0.999535290246196 hm5C_site_17507 DeepMRMD:1;iRNA_m5C:0.999535290246196 17508 chr1 22307603 22307603 1 + C T BLCA 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCATC < 41bp 1 0.575853875000548 1 0.410841554403305 experiment 0.848292249998904 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307603 synonymous SNV . 0 35 hm5C_associated_SNPs_15911 0 0 0 0 2 unknown 1 0.500231755798652 1 0.999536488402695 hm5C_site_17508 DeepMRMD:1;iRNA_m5C:0.999536488402695 17509 chr1 22307603 22307603 1 + C T BLCA 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCATCA < 41bp 1 0.397323000529476 1 0.145705580711365 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307603 synonymous SNV . 0 34 hm5C_associated_SNPs_15912 0 0 0 0 2 unknown 1 0.500231685845068 1 0.999536628309864 hm5C_site_17509 DeepMRMD:1;iRNA_m5C:0.999536628309864 17510 chr1 22307603 22307603 1 + C T BLCA 22307591 + 22307571 22307611 41 CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATTCCCATCAA < 41bp 1 0.60468706985587 1 0.137883871793747 experiment 0.790625860288259 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307591 chr1:22307603 synonymous SNV . 0 33 hm5C_associated_SNPs_15913 0 0 0 0 2 unknown 1 0.500234345702239 1 0.999531308595522 hm5C_site_17510 DeepMRMD:1;iRNA_m5C:0.999531308595522 17511 chr1 22307603 22307603 1 + C T BLCA 22307604 + 22307584 22307624 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTC AGGGCCCCGAGCAGGTGATTCCCATCAACTCTGGGGACCTC < 41bp 1 0.109412510675433 1 0.0521884262561798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307604 chr1:22307603 synonymous SNV . 0 20 hm5C_associated_SNPs_15915 0 0 0 0 2 unknown 1 0.500231643911005 1 0.99953671217799 hm5C_site_17511 DeepMRMD:1;iRNA_m5C:0.99953671217799 17512 chr1 22307603 22307603 1 + C T BLCA 22307605 + 22307585 22307625 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCT GGGCCCCGAGCAGGTGATTCCCATCAACTCTGGGGACCTCT < 41bp 1 0.0376642371442894 1 0.145845860242844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307605 chr1:22307603 synonymous SNV . 0 19 hm5C_associated_SNPs_15916 0 0 0 0 2 unknown 1 0.500231643921171 1 0.999536712157659 hm5C_site_17512 DeepMRMD:1;iRNA_m5C:0.999536712157659 17513 chr1 22307603 22307603 1 + C T BLCA 22307606 + 22307586 22307626 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCTT GGCCCCGAGCAGGTGATTCCCATCAACTCTGGGGACCTCTT < 41bp 1 0.369945359029408 1 0.7057785987854 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307606 chr1:22307603 synonymous SNV . 0 18 hm5C_associated_SNPs_15917 0 0 0 0 2 unknown 1 0.500231643411997 0.5884428024292 0.999536713176005 hm5C_site_17513 DeepMRMD:0.5884428024292;iRNA_m5C:0.999536713176005 17514 chr1 22307603 22307603 1 + C T BLCA 22307612 + 22307592 22307632 41 GAGCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCA GAGCAGGTGATTCCCATCAACTCTGGGGACCTCTTTGTGCA < 41bp 1 0.509570148122366 1 0.532781362533569 experiment 0.980859703755268 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307612 chr1:22307603 synonymous SNV . 0 12 hm5C_associated_SNPs_15918 0 0 0 0 2 unknown 1 0.500231643861886 0.934437274932862 0.999536712276229 hm5C_site_17514 DeepMRMD:0.934437274932862;iRNA_m5C:0.999536712276229 17515 chr1 22307603 22307603 1 + C T BLCA 22307621 + 22307601 22307641 41 ATCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTG ATTCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTG < 41bp 1 0.0679761972607726 1 0.0296905934810638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307621 chr1:22307603 synonymous SNV . 0 3 hm5C_associated_SNPs_15919 0 0 0 0 2 unknown 1 0.500231643642703 1 0.999536712714593 hm5C_site_17515 DeepMRMD:1;iRNA_m5C:0.999536712714593 17516 chr1 22307603 22307603 1 + C T BLCA 22307622 + 22307602 22307642 41 TCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGG TTCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGG < 41bp 1 0.104820093838011 1 0.0685433745384216 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307622 chr1:22307603 synonymous SNV . 0 2 hm5C_associated_SNPs_15920 0 0 0 0 2 unknown 1 0.500231643920346 1 0.999536712159309 hm5C_site_17516 DeepMRMD:1;iRNA_m5C:0.999536712159309 17517 chr19 58198719 58198719 1 + G A BLCA 58198728 + 58198708 58198748 41 AGTTCACACTGGAGAAAGGCCTTATGAATGTGGCGAGTGCG AGTTCACACTGAAGAAAGGCCTTATGAATGTGGCGAGTGCG < 41bp 1 0.0606806126393948 1 0.0380374193191528 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF551 ENSG00000204519 CDS Human protein_coding chr19:58198728 chr19:58198719 nonsynonymous SNV 0.002 2 12 hm5C_associated_SNPs_15921 0 0 0 0 0 Cytosol 1 0.500231643915228 1 0.999536712169544 hm5C_site_17517 DeepMRMD:1;iRNA_m5C:0.999536712169544 17518 chr13 22246302 22246302 1 + G A BLCA 22246318 + 22246298 22246338 41 CAGGGAACCAGGAAAGACCACAGCCGATTTGGTAGGTATAC CAGGAAACCAGGAAAGACCACAGCCGATTTGGTAGGTATAC < 41bp 1 0.340373193538137 1 0.106296002864838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF9 ENSG00000102678 CDS Human protein_coding chr13:22246318 chr13:22246302 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_15922 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17518 DeepMRMD:1;iRNA_m5C:0.999536712157815 17519 chr16 31091412 31091412 1 + G A BLCA 31091428 + 31091408 31091448 41 CCCCGACGTTTCCGCTGCAGCGAGTGTGGGAAGGCCTTCCG CCCCAACGTTTCCGCTGCAGCGAGTGTGGGAAGGCCTTCCG < 41bp 1 0.695781135649961 1 0.794861972332001 experiment 0.608437728700078 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31091428 chr16:31091412 nonsynonymous SNV 0.993 0 5 hm5C_associated_SNPs_15923 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164387934 0.410276055335998 0.99953671224132 hm5C_site_17519 DeepMRMD:0.410276055335998;iRNA_m5C:0.99953671224132 17520 chr20 306653 306653 1 + G T BLCA 306648 + 306628 306668 41 CGGGCCGGCCGAGGAGGGGGCGCGCGAGCCCGGCTGGTGCA CGGGCCGGCCGAGGAGGGGGCGCGCTAGCCCGGCTGGTGCA < 41bp 1 0.682690193816863 1 0.647439002990723 experiment 0.634619612366274 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOX12 ENSG00000177732 CDS Human protein_coding chr20:306648 chr20:306653 stopgain 0.760 0 26 hm5C_associated_SNPs_15924 0 0 1 0 0 Ribosome 1 0.500231643921092 0.705121994018554 0.999536712157815 hm5C_site_17520 DeepMRMD:0.705121994018554;iRNA_m5C:0.999536712157815 17521 chr20 306653 306653 1 + G T BLCA 306652 + 306632 306672 41 CCGGCCGAGGAGGGGGCGCGCGAGCCCGGCTGGTGCAAGAC CCGGCCGAGGAGGGGGCGCGCTAGCCCGGCTGGTGCAAGAC < 41bp 1 0.569202680847758 1 0.0877096056938171 experiment 0.861594638304484 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOX12 ENSG00000177732 CDS Human protein_coding chr20:306652 chr20:306653 stopgain 0.760 0 22 hm5C_associated_SNPs_15925 0 0 1 0 0 Ribosome 1 0.500231643920658 1 0.999536712158683 hm5C_site_17521 DeepMRMD:1;iRNA_m5C:0.999536712158683 17522 chr20 306653 306653 1 + G T BLCA 306657 + 306637 306677 41 CGAGGAGGGGGCGCGCGAGCCCGGCTGGTGCAAGACCCCGA CGAGGAGGGGGCGCGCTAGCCCGGCTGGTGCAAGACCCCGA < 41bp 1 0.686922769259977 1 0.814125537872314 experiment 0.626154461480046 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOX12 ENSG00000177732 CDS Human protein_coding chr20:306657 chr20:306653 stopgain 0.760 0 17 hm5C_associated_SNPs_15926 0 0 1 0 0 Ribosome 1 0.500231643919934 0.371748924255372 0.999536712160131 hm5C_site_17522 DeepMRMD:0.371748924255372;iRNA_m5C:0.999536712160131 17523 chr1 145539074 145539074 1 + C A BLCA 145539084 + 145539064 145539104 41 CTATCACTGTCTCAAGTCATCACTAACAATGTGAGTCTGGT CTATCACTGTATCAAGTCATCACTAACAATGTGAGTCTGGT < 41bp 1 0.101371614004785 1 0.264760971069336 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539084 chr1:145539074 nonsynonymous SNV . 0 11 hm5C_associated_SNPs_15927 0 0 0 0 2 exosome 1 0.500243166890167 1 0.999513666219665 hm5C_site_17523 DeepMRMD:1;iRNA_m5C:0.999513666219665 17524 chr3 184648312 184648312 1 + G A BLCA 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACAGTGCAAAGGAGAAGCAGTCTGTATGGCAGAAAGCA < 41bp 1 0.0836918207409064 1 0.233729809522629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648312 nonsynonymous SNV 0.992 1 12 hm5C_associated_SNPs_15928 0 0 1 0 2 chromatin 1 0.500231643927932 1 0.999536712144137 hm5C_site_17524 DeepMRMD:1;iRNA_m5C:0.999536712144137 17525 chr19 33202726 33202726 1 + G T BLCA 33202731 + 33202711 33202751 41 GAAAAAAAGACTGAGGAAATCATGAAGGAAGGCAAGCAGTT GAAAAAAAGACTGAGTAAATCATGAAGGAAGGCAAGCAGTT < 41bp 1 0.57845775848666 1 0.342743158340454 experiment 0.843084483026681 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NUDT19 ENSG00000213965 CDS Human protein_coding chr19:33202731 chr19:33202726 stopgain 0.997 0 16 hm5C_associated_SNPs_15929 0 0 1 0 1 Ribosome 1 0.500231643939327 1 0.999536712121345 hm5C_site_17525 DeepMRMD:1;iRNA_m5C:0.999536712121345 17526 chr19 1978449 1978449 1 + C T BLCA 1978465 + 1978445 1978485 41 CGATCAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG CGATTAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG < 41bp 1 0.446717182214661 1 0.808002948760986 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978465 chr19:1978449 synonymous SNV . 0 5 hm5C_associated_SNPs_15930 0 0 1 0 2 Ribosome 1 0.500231643888019 0.383994102478028 0.999536712223962 hm5C_site_17526 DeepMRMD:0.383994102478028;iRNA_m5C:0.999536712223962 17527 chr22 26400707 26400707 1 + C A BLCA 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGGATAACGTCTCCATCCTCAGCTACCAGCCAG < 41bp 1 0.0268192262148473 1 0.419796347618103 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400707 nonsynonymous SNV 0.998 3 33 hm5C_associated_SNPs_15931 0 0 0 0 1 chromatin 1 0.500231643891871 1 0.999536712216257 hm5C_site_17527 DeepMRMD:1;iRNA_m5C:0.999536712216257 17528 chr9 137987778 137987778 1 + G C BLCA 137987790 + 137987770 137987810 41 TACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC TACGTGGACAAGATGGAGAACCAAATGAAAGGACTGGAGTC < 41bp 1 0.221389911457639 1 0.277133464813232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987790 chr9:137987778 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_15932 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921095 1 0.99953671215781 hm5C_site_17528 DeepMRMD:1;iRNA_m5C:0.99953671215781 17529 chr9 137987778 137987778 1 + G C BLCA 137987791 + 137987771 137987811 41 ACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC ACGTGGACAAGATGGAGAACCAAATGAAAGGACTGGAGTCC < 41bp 1 0.319487684727674 1 0.611215949058533 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987791 chr9:137987778 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_15933 0 0 0 0 2 Endoplasmic reticulum 1 0.50023163436956 0.777568101882934 0.99953673126088 hm5C_site_17529 DeepMRMD:0.777568101882934;iRNA_m5C:0.99953673126088 17530 chr1 155279692 155279692 1 + G T BLCA 155279674 + 155279654 155279694 41 GGTGGCTGGGTTCCCTACGGCGGCCCTCCCTGGTGCACGGG GGTGGCTGGGTTCCCTACGGCGGCCCTCCCTGGTGCACTGG < 41bp 1 0.645181947022206 1 0.281249552965164 experiment 0.709636105955588 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279674 chr1:155279692 nonsynonymous SNV 0.615 0 39 hm5C_associated_SNPs_15935 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17530 DeepMRMD:1;iRNA_m5C:0.999536712157815 17531 chr1 155279692 155279692 1 + G T BLCA 155279678 + 155279658 155279698 41 GCTGGGTTCCCTACGGCGGCCCTCCCTGGTGCACGGGTACC GCTGGGTTCCCTACGGCGGCCCTCCCTGGTGCACTGGTACC < 41bp 1 0.0699545833088033 1 0.0718069076538086 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279678 chr1:155279692 nonsynonymous SNV 0.615 0 35 hm5C_associated_SNPs_15936 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17531 DeepMRMD:1;iRNA_m5C:0.999536712157815 17532 chr1 155279692 155279692 1 + G T BLCA 155279679 + 155279659 155279699 41 CTGGGTTCCCTACGGCGGCCCTCCCTGGTGCACGGGTACCC CTGGGTTCCCTACGGCGGCCCTCCCTGGTGCACTGGTACCC < 41bp 1 0.464608124200329 1 0.855092644691467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279679 chr1:155279692 nonsynonymous SNV 0.615 0 34 hm5C_associated_SNPs_15937 0 0 1 0 1 Cytosol 1 0.500231643921017 0.289814710617066 0.999536712157965 hm5C_site_17532 DeepMRMD:0.289814710617066;iRNA_m5C:0.999536712157965 17533 chr3 44815901 44815901 1 + G T BLCA 44815917 + 44815897 44815937 41 CAGCGTGACAAATGGTCAGTCTAACCAACCAAGGTAAGGAG CAGCTTGACAAATGGTCAGTCTAACCAACCAAGGTAAGGAG < 41bp 1 0.10493516917926 1 0.195492446422577 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF15 ENSG00000163808 CDS Human protein_coding chr3:44815917 chr3:44815901 nonsynonymous SNV 0.978 1 5 hm5C_associated_SNPs_15938 0 0 1 0 2 Ribosome 1 0.500226496579128 1 0.999547006841744 hm5C_site_17533 DeepMRMD:1;iRNA_m5C:0.999547006841744 17534 chr22 26400708 26400708 1 + C A BLCA 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGGATAACGTCTCCATCCTCAGCTCACAGCCAG < 41bp 1 0.0247103783897259 1 0.753066420555115 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400708 synonymous SNV . 0 34 hm5C_associated_SNPs_15939 0 0 0 0 1 chromatin 1 0.500231643921093 0.49386715888977 0.999536712157814 hm5C_site_17534 DeepMRMD:0.49386715888977;iRNA_m5C:0.999536712157814 17535 chr6 146875732 146875732 1 + G A BLCA 146875716 + 146875696 146875736 41 AGATCAAGAGACCTTGAGAGCAGAGAACAAATCCCAGTGTT AGATCAAGAGACCTTGAGAGCAGAGAACAAATCCCAATGTT < 41bp 1 0.530435215003474 1 0.732195317745209 experiment 0.939129569993052 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAB32 ENSG00000118508 CDS Human protein_coding chr6:146875716 chr6:146875732 synonymous SNV . 0 37 hm5C_associated_SNPs_15940 0 0 1 0 0 Ribosome 1 0.500232251794758 0.535609364509582 0.999535496410483 hm5C_site_17535 DeepMRMD:0.535609364509582;iRNA_m5C:0.999535496410483 17536 chr22 26242214 26242214 1 + G A BLCA 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGCGGTGAGAAGGAAAGCCCCGTGCTCCCAGATCAAGC < 41bp 1 0.240446442735244 1 0.112623482942581 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242214 synonymous SNV . 0 13 hm5C_associated_SNPs_15941 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17536 DeepMRMD:1;iRNA_m5C:0.999536712157815 17537 chr3 183368417 183368417 1 + C G BLCA 183368408 + 183368388 183368428 41 GCTGTGCTCTCAGCCTGTAGCAGCTACTTCAGAGCTATGTT GCTGTGCTCTCAGCCTGTAGCAGCTACTTGAGAGCTATGTT < 41bp 1 0.504709805319589 1 0.366583168506622 experiment 0.990580389360822 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183368408 chr3:183368417 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_15942 0 0 1 0 0 Ribosome 1 0.500231644633402 1 0.999536710733197 hm5C_site_17537 DeepMRMD:1;iRNA_m5C:0.999536710733197 17538 chr16 30016683 30016683 1 + C T BLCA 30016663 + 30016643 30016683 41 CCCTAAGATGCCCCCCCCCACGATCCTGAGCACGGTCCCTC CCCTAAGATGCCCCCCCCCACGATCCTGAGCACGGTCCCTT < 41bp 1 0.259693397848607 1 0.100524127483368 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INO80E ENSG00000169592 CDS Human protein_coding chr16:30016663 chr16:30016683 nonsynonymous SNV 0.958 1 41 hm5C_associated_SNPs_15943 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17538 DeepMRMD:1;iRNA_m5C:0.999536712157815 17539 chr5 140347704 140347704 1 + C T BLCA 140347691 + 140347671 140347711 41 AGCCACAGATGGGGGAATACCGCAGCTCACATCCCTGCGTA AGCCACAGATGGGGGAATACCGCAGCTCACATCTCTGCGTA < 41bp 1 0.65061846949636 1 0.816224813461304 experiment 0.698763061007281 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCDHAC2 ENSG00000243232 CDS Human protein_coding chr5:140347691 chr5:140347704 synonymous SNV . 0 34 hm5C_associated_SNPs_15944 0 0 0 0 0 exosome 1 0.500231662884813 0.367550373077392 0.999536674230374 hm5C_site_17539 DeepMRMD:0.367550373077392;iRNA_m5C:0.999536674230374 17540 chr2 200824491 200824491 1 + G A BLCA 200824505 + 200824485 200824525 41 TGCATTGAAAGAAAAGGTTACTTCACTACCTGACAACCATA TGCATTAAAAGAAAAGGTTACTTCACTACCTGACAACCATA < 41bp 1 0.281912797012943 1 0.114675104618073 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824505 chr2:200824491 synonymous SNV . 0 7 hm5C_associated_SNPs_15945 0 0 1 0 1 unknown 1 0.50077330744304 1 0.998453385113921 hm5C_site_17540 DeepMRMD:1;iRNA_m5C:0.998453385113921 17541 chr17 34009793 34009793 1 + C G BLCA 34009813 + 34009793 34009833 41 CTCAATACCTTGGGCCCAGTCATGAAGATGGAACCTCTGAA GTCAATACCTTGGGCCCAGTCATGAAGATGGAACCTCTGAA < 41bp 1 0.695883622717666 1 0.504534065723419 experiment 0.608232754564668 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:34009813 chr17:34009793 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_15946 0 0 1 0 2 Cytosol 1 0.500231644007293 0.990931868553162 0.999536711985414 hm5C_site_17541 DeepMRMD:0.990931868553162;iRNA_m5C:0.999536711985414 17542 chr17 7402793 7402793 1 + G A BLCA 7402808 + 7402788 7402828 41 AGAGAGACGTCTTCCTGGAGCGGGTGTGTGGTCCAAATGGA AGAGAAACGTCTTCCTGGAGCGGGTGTGTGGTCCAAATGGA < 41bp 1 0.559011965806268 1 0.732277274131775 experiment 0.881976068387464 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7402808 chr17:7402793 nonsynonymous SNV 0.991 3 6 hm5C_associated_SNPs_15948 0 0 0 0 1 Nucleus 1 0.500231634289922 0.53544545173645 0.999536731420156 hm5C_site_17542 DeepMRMD:0.53544545173645;iRNA_m5C:0.999536731420156 17543 chr2 54872396 54872396 1 + A G BLCA 54872378 + 54872358 54872398 41 GCCCTCAGATGCTGGAGAATCAGATGGAAGTGCGGAAGAAG GCCCTCAGATGCTGGAGAATCAGATGGAAGTGCGGAAGGAG < 41bp 1 0.407062062487964 1 0.819797992706299 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872378 chr2:54872396 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_15949 0 0 1 0 1 Nucleus 1 0.500231643921053 0.360404014587402 0.999536712157894 hm5C_site_17543 DeepMRMD:0.360404014587402;iRNA_m5C:0.999536712157894 17544 chr2 54872396 54872396 1 + A G BLCA 54872413 + 54872393 54872433 41 AAGAAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCT AAGGAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCT < 41bp 1 0.307907944840431 1 0.103343516588211 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872413 chr2:54872396 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_15950 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17544 DeepMRMD:1;iRNA_m5C:0.999536712157815 17545 chr3 52238004 52238004 1 + C T BLCA 52238023 + 52238003 52238043 41 TCTTCTTCAAGATAACTTGCCAAAATGTAAGTCTCATTGTT TTTTCTTCAAGATAACTTGCCAAAATGTAAGTCTCATTGTT < 41bp 1 0.333803421037485 1 0.165312945842743 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52238023 chr3:52238004 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_15951 0 0 1 0 1 Cytosol 1 0.500231644614574 1 0.999536710770851 hm5C_site_17545 DeepMRMD:1;iRNA_m5C:0.999536710770851 17546 chr1 22331955 22331955 1 + G C BLCA 22331944 + 22331924 22331964 41 CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTG CCTCCTGGGCCACCAGGTTTCCCTGCAGTATCAGAAAAGTG < 41bp 1 0.167738696541591 1 0.096904456615448 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331944 chr1:22331955 nonsynonymous SNV 0.433 1 32 hm5C_associated_SNPs_15952 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921126 1 0.999536712157749 hm5C_site_17546 DeepMRMD:1;iRNA_m5C:0.999536712157749 17547 chr1 22331955 22331955 1 + G C BLCA 22331945 + 22331925 22331965 41 CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGG CTCCTGGGCCACCAGGTTTCCCTGCAGTATCAGAAAAGTGG < 41bp 1 0.0698034893389784 1 0.0970418751239777 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331945 chr1:22331955 nonsynonymous SNV 0.433 1 31 hm5C_associated_SNPs_15953 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921105 1 0.999536712157791 hm5C_site_17547 DeepMRMD:1;iRNA_m5C:0.999536712157791 17548 chr1 22331955 22331955 1 + G C BLCA 22331949 + 22331929 22331969 41 TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGAAGC TGGGCCACCAGGTTTCCCTGCAGTATCAGAAAAGTGGAAGC < 41bp 1 0.499574094346956 1 0.185654908418655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331949 chr1:22331955 nonsynonymous SNV 0.433 1 27 hm5C_associated_SNPs_15954 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_17548 DeepMRMD:1;iRNA_m5C:0.999536712157818 17549 chr1 22331955 22331955 1 + G C BLCA 22331969 + 22331949 22331989 41 CAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG CAGTATCAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG < 41bp 1 0.168697461331022 1 0.30516391992569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331969 chr1:22331955 nonsynonymous SNV 0.433 1 7 hm5C_associated_SNPs_15955 0 0 0 0 2 Endoplasmic reticulum 1 0.500231666745553 1 0.999536666508895 hm5C_site_17549 DeepMRMD:1;iRNA_m5C:0.999536666508895 17550 chr1 22331955 22331955 1 + G C BLCA 22331972 + 22331952 22331992 41 TATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAG TATCAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAG < 41bp 1 0.306904459275143 1 0.362398982048035 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331972 chr1:22331955 nonsynonymous SNV 0.433 1 4 hm5C_associated_SNPs_15956 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921125 1 0.99953671215775 hm5C_site_17550 DeepMRMD:1;iRNA_m5C:0.99953671215775 17551 chr1 22331955 22331955 1 + G C BLCA 22331975 + 22331955 22331995 41 GAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCT CAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCT < 41bp 1 0.418495006681757 1 0.0631860792636871 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331975 chr1:22331955 nonsynonymous SNV 0.433 1 1 hm5C_associated_SNPs_15957 0 0 0 0 2 Endoplasmic reticulum 1 0.500231641088113 1 0.999536717823773 hm5C_site_17551 DeepMRMD:1;iRNA_m5C:0.999536717823773 17552 chr11 118939921 118939921 1 + A G BLCA 118939940 + 118939920 118939960 41 GATCTGGTTCTTGCCACGTTCCTACAGCTTACAGGCTTCCA GGTCTGGTTCTTGCCACGTTCCTACAGCTTACAGGCTTCCA < 41bp 1 0.0772889107245895 1 0.586368083953857 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS11 ENSG00000160695 CDS Human protein_coding chr11:118939940 chr11:118939921 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_15958 0 0 1 0 1 cytosol 1 0.5002316439138 0.827263832092286 0.9995367121724 hm5C_site_17552 DeepMRMD:0.827263832092286;iRNA_m5C:0.9995367121724 17553 chr12 57919782 57919782 1 + G A BLCA 57919787 + 57919767 57919807 41 GCACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCA GCACTTTACAGGGCCAAAGGCCCCGTGCCCAGGCACCCTCA < 41bp 1 0.368710056250759 1 0.538339614868164 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919787 chr12:57919782 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_15959 0 0 1 0 0 chromatin 1 0.500231643921092 0.923320770263672 0.999536712157815 hm5C_site_17553 DeepMRMD:0.923320770263672;iRNA_m5C:0.999536712157815 17554 chr12 57919782 57919782 1 + G A BLCA 57919788 + 57919768 57919808 41 CACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAG CACTTTACAGGGCCAAAGGCCCCGTGCCCAGGCACCCTCAG < 41bp 1 0.246455034663572 1 0.299428790807724 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919788 chr12:57919782 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_15960 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17554 DeepMRMD:1;iRNA_m5C:0.999536712157815 17555 chr12 57919782 57919782 1 + G A BLCA 57919789 + 57919769 57919809 41 ACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGC ACTTTACAGGGCCAAAGGCCCCGTGCCCAGGCACCCTCAGC < 41bp 1 0.150360480661296 1 0.160284101963043 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919789 chr12:57919782 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_15961 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17555 DeepMRMD:1;iRNA_m5C:0.999536712157815 17556 chr12 57919782 57919782 1 + G A BLCA 57919790 + 57919770 57919810 41 CTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCT CTTTACAGGGCCAAAGGCCCCGTGCCCAGGCACCCTCAGCT < 41bp 1 0.188376136401414 1 0.237141072750092 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919790 chr12:57919782 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_15962 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17556 DeepMRMD:1;iRNA_m5C:0.999536712157815 17557 chr12 57919782 57919782 1 + G A BLCA 57919794 + 57919774 57919814 41 ACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCC ACAGGGCCAAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCC < 41bp 1 0.21424487032753 1 0.120312511920929 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919794 chr12:57919782 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_15963 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17557 DeepMRMD:1;iRNA_m5C:0.999536712157815 17558 chr12 57919782 57919782 1 + G A BLCA 57919795 + 57919775 57919815 41 CAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCA CAGGGCCAAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCA < 41bp 1 0.22884819381267 1 0.104983448982239 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919795 chr12:57919782 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_15964 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17558 DeepMRMD:1;iRNA_m5C:0.999536712157815 17559 chr12 57919782 57919782 1 + G A BLCA 57919796 + 57919776 57919816 41 AGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCAC AGGGCCAAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCAC < 41bp 1 0.578683390425135 1 0.790171504020691 experiment 0.842633219149731 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919796 chr12:57919782 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_15965 0 0 1 0 0 chromatin 1 0.500231643921092 0.419656991958618 0.999536712157815 hm5C_site_17559 DeepMRMD:0.419656991958618;iRNA_m5C:0.999536712157815 17560 chr12 57919782 57919782 1 + G A BLCA 57919800 + 57919780 57919820 41 CCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCT CCAAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCT < 41bp 1 0.220321129026709 1 0.0138973593711853 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919800 chr12:57919782 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_15966 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157813 hm5C_site_17560 DeepMRMD:1;iRNA_m5C:0.999536712157813 17561 chr12 57919782 57919782 1 + G A BLCA 57919802 + 57919782 57919822 41 GAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCA AAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCA < 41bp 1 0.0211556565212019 1 0.0108990371227264 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919802 chr12:57919782 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_15967 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_17561 DeepMRMD:1;iRNA_m5C:0.999536712157814 17562 chr19 3151779 3151779 1 + T C BLCA 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCGCACGCCCACCACTGGCATCAACGAGTACTG < 41bp 1 0.413497108745861 1 0.0525122880935669 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151779 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_15968 0 0 0 0 2 exosome 1 0.500230272941352 1 0.999539454117296 hm5C_site_17562 DeepMRMD:1;iRNA_m5C:0.999539454117296 17563 chr19 14024301 14024301 1 + G A BLCA 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCCGCCAGTGGCCATAGGAAAAAGCCCGGCGT < 41bp 1 0.253121708882571 1 0.324832141399384 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024301 nonsynonymous SNV 0.001 1 32 hm5C_associated_SNPs_15969 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17563 DeepMRMD:1;iRNA_m5C:0.999536712157815 17564 chr2 216197224 216197224 1 + C G BLCA 216197204 + 216197184 216197224 41 TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCC TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCG < 41bp 1 0.0473232694739299 1 0.112897843122482 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197204 chr2:216197224 nonsynonymous SNV 0.995 5 41 hm5C_associated_SNPs_15970 0 0 1 0 1 chromatin 1 0.500231643921094 1 0.999536712157813 hm5C_site_17564 DeepMRMD:1;iRNA_m5C:0.999536712157813 17565 chr2 216197224 216197224 1 + C G BLCA 216197205 + 216197185 216197225 41 TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCCC TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCGC < 41bp 1 0.383331904946424 1 0.296723365783691 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197205 chr2:216197224 nonsynonymous SNV 0.995 5 40 hm5C_associated_SNPs_15971 0 0 1 0 1 chromatin 1 0.500230534128129 1 0.999538931743743 hm5C_site_17565 DeepMRMD:1;iRNA_m5C:0.999538931743743 17566 chr12 7050593 7050593 1 + C G BLCA 7050585 + 7050565 7050605 41 CCTTTCTGCCCCGATGTCAGCAGCTCATCAGCTGCAGGCCA CCTTTCTGCCCCGATGTCAGCAGCTCATGAGCTGCAGGCCA < 41bp 1 0.376330969448194 1 0.573878288269043 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATN1 ENSG00000111676 CDS Human protein_coding chr12:7050585 chr12:7050593 nonsynonymous SNV 0.977 2 29 hm5C_associated_SNPs_15972 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644106985 0.852243423461914 0.999536711786029 hm5C_site_17566 DeepMRMD:0.852243423461914;iRNA_m5C:0.999536711786029 17567 chrX 153695958 153695958 1 + C T BLCA 153695954 + 153695934 153695974 41 ACACTGTGCTGATAGGAGGCCAGCCGTGTTCGCTCACTGTC ACACTGTGCTGATAGGAGGCCAGCTGTGTTCGCTCACTGTC < 41bp 1 0.306335699221205 1 0.335675239562988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695954 chrX:153695958 nonsynonymous SNV 0.179 3 25 hm5C_associated_SNPs_15973 0 0 1 0 2 Endoplasmic reticulum 1 0.500226242845672 1 0.999547514308657 hm5C_site_17567 DeepMRMD:1;iRNA_m5C:0.999547514308657 17568 chr2 75104444 75104444 1 + G C BLCA 75104440 + 75104420 75104460 41 GAGACCAAAGACATCTCAGACATTGAAGGGTGAGCTTCTGG GAGACCAAAGACATCTCAGACATTCAAGGGTGAGCTTCTGG < 41bp 1 0.0321666081648683 1 0.0422433018684387 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HK2 ENSG00000159399 CDS Human protein_coding chr2:75104440 chr2:75104444 nonsynonymous SNV 0.858 5 25 hm5C_associated_SNPs_15974 0 0 1 0 0 Nucleus 1 0.500231643786534 1 0.999536712426931 hm5C_site_17568 DeepMRMD:1;iRNA_m5C:0.999536712426931 17569 chr1 203834186 203834186 1 + G A BLCA 203834189 + 203834169 203834209 41 GGTTTTGATGAGTATATGAACCTTGTATTAGATGATGCAGA GGTTTTGATGAGTATATAAACCTTGTATTAGATGATGCAGA < 41bp 1 0.0753249002035857 1 0.134621679782867 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPE ENSG00000182004 CDS Human protein_coding chr1:203834189 chr1:203834186 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_15976 0 0 1 2 1 Ribosome 1 0.500231644146103 1 0.999536711707793 hm5C_site_17569 DeepMRMD:1;iRNA_m5C:0.999536711707793 17570 chr17 16342882 16342882 1 + T C BLCA 16342874 + 16342854 16342894 41 GAAGCGATAACTGACGACGTCTAATGTCTATCTGACCGCAG GAAGCGATAACTGACGACGTCTAATGTCCATCTGACCGCAG < 41bp 1 0.24437084580277 1 0.0549175143241882 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342874 chr17:16342882 . . 0 29 hm5C_associated_SNPs_15977 0 0 1 0 1 Nucleus 1 0.500231643921036 1 0.999536712157928 hm5C_site_17570 DeepMRMD:1;iRNA_m5C:0.999536712157928 17571 chr17 16342882 16342882 1 + T C BLCA 16342881 + 16342861 16342901 41 TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGA TAACTGACGACGTCTAATGTCCATCTGACCGCAGTCGCTGA < 41bp 1 0.0577994880390702 1 0.038604199886322 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342881 chr17:16342882 . . 0 22 hm5C_associated_SNPs_15978 0 0 1 0 1 Nucleus 1 0.500240410355089 1 0.999519179289822 hm5C_site_17571 DeepMRMD:1;iRNA_m5C:0.999519179289822 17572 chr2 216960901 216960901 1 + G A BLCA 216960884 + 216960864 216960904 41 GAGAAAACAGATGAGGAGCCCGGAGAATCAGAAGGTGGAGA GAGAAAACAGATGAGGAGCCCGGAGAATCAGAAGGTGAAGA < 41bp 1 0.546844460150033 1 0.75552773475647 experiment 0.906311079699935 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM169 ENSG00000163449 CDS Human protein_coding chr2:216960884 chr2:216960901 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_15979 0 0 0 0 1 Nucleus 1 0.500231643921092 0.48894453048706 0.999536712157815 hm5C_site_17572 DeepMRMD:0.48894453048706;iRNA_m5C:0.999536712157815 17573 chr12 109537036 109537036 1 + T C BLCA 109537024 + 109537004 109537044 41 TTGTTGCAGAAGAAAGAAAGCATTACACTGTTTATCCACCC TTGTTGCAGAAGAAAGAAAGCATTACACTGTTCATCCACCC < 41bp 1 0.215697294990937 1 0.0830960273742676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109537024 chr12:109537036 nonsynonymous SNV 0.926 4 33 hm5C_associated_SNPs_15980 0 0 1 0 2 Ribosome 1 0.50023164392137 1 0.99953671215726 hm5C_site_17573 DeepMRMD:1;iRNA_m5C:0.99953671215726 17574 chr5 34929961 34929961 1 + G A BLCA 34929960 + 34929940 34929980 41 GAGGCGCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCT GAGGCGCTGGGGGTGCGGCGCAACGCCAGCGAGGAGGAGCT < 41bp 1 0.654813685891862 1 0.148938298225403 experiment 0.690372628216276 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34929960 chr5:34929961 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_15983 0 0 1 0 1 Cytosol 1 0.50023164392108 1 0.99953671215784 hm5C_site_17574 DeepMRMD:1;iRNA_m5C:0.99953671215784 17575 chr22 22040818 22040818 1 + C T BLCA 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCACCGTGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.295712677497006 1 0.251104086637497 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040818 nonsynonymous SNV 0.013 1 14 hm5C_associated_SNPs_15985 0 0 1 0 2 Cytosol 1 0.500231643918977 1 0.999536712162046 hm5C_site_17575 DeepMRMD:1;iRNA_m5C:0.999536712162046 17576 chr8 104438289 104438289 1 + T G BLCA 104438295 + 104438275 104438315 41 TATTTCTAGGTTGGTGATGACAAAACTGTGAAGCAGTGGAA TATTTCTAGGTTGGGGATGACAAAACTGTGAAGCAGTGGAA < 41bp 1 0.63470546621098 1 0.579000771045685 experiment 0.730589067578041 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438295 chr8:104438289 synonymous SNV 0.997 0 15 hm5C_associated_SNPs_15986 0 0 1 0 2 Nucleus 1 0.500231643921092 0.84199845790863 0.999536712157815 hm5C_site_17576 DeepMRMD:0.84199845790863;iRNA_m5C:0.999536712157815 17577 chr8 104438289 104438289 1 + T G BLCA 104438308 + 104438288 104438328 41 GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA GGGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA < 41bp 1 0.430495670361347 1 0.775513470172882 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438308 chr8:104438289 synonymous SNV 0.997 0 2 hm5C_associated_SNPs_15987 0 0 1 0 2 Nucleus 1 0.500231643958875 0.448973059654236 0.999536712082251 hm5C_site_17577 DeepMRMD:0.448973059654236;iRNA_m5C:0.999536712082251 17578 chr14 21967264 21967264 1 + A C BLCA 21967278 - 21967258 21967298 41 TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAACCA TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCAGAAACCA < 41bp 1 0.0198871354407865 1 0.0497432947158813 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control METTL3 ENSG00000165819 CDS Human protein_coding chr14:21967278 chr14:21967264 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_15988 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17578 DeepMRMD:1;iRNA_m5C:0.999536712157815 17579 chr11 110035165 110035165 1 + G C BLCA 110035177 + 110035157 110035197 41 CATGTCTAGAAATACGGCAGCCAAAACTGCAAACGAAGGAG CATGTCTACAAATACGGCAGCCAAAACTGCAAACGAAGGAG < 41bp 1 0.159467700581272 1 0.247871428728104 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035177 chr11:110035165 nonsynonymous SNV 0.795 2 9 hm5C_associated_SNPs_15989 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643646367 1 0.999536712707266 hm5C_site_17579 DeepMRMD:1;iRNA_m5C:0.999536712707266 17580 chr11 110035165 110035165 1 + G C BLCA 110035178 + 110035158 110035198 41 ATGTCTAGAAATACGGCAGCCAAAACTGCAAACGAAGGAGG ATGTCTACAAATACGGCAGCCAAAACTGCAAACGAAGGAGG < 41bp 1 0.389638431046548 1 0.460243493318558 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035178 chr11:110035165 nonsynonymous SNV 0.795 2 8 hm5C_associated_SNPs_15990 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644248618 1 0.999536711502764 hm5C_site_17580 DeepMRMD:1;iRNA_m5C:0.999536711502764 17581 chr16 85691140 85691140 1 + G C BLCA 85691160 + 85691140 85691180 41 GAGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGA CAGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGA < 41bp 1 0.334160139188074 1 0.572038412094116 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691160 chr16:85691140 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_15991 0 0 1 0 1 Cytosol 1 0.500231643921093 0.855923175811768 0.999536712157815 hm5C_site_17581 DeepMRMD:0.855923175811768;iRNA_m5C:0.999536712157815 17582 chr1 180034342 180034342 1 + C T BLCA 180034360 + 180034340 180034380 41 ATCTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA ATTTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA < 41bp 1 0.596979032538506 1 0.135182976722717 experiment 0.806041934922988 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180034360 chr1:180034342 synonymous SNV . 0 3 hm5C_associated_SNPs_15992 0 0 1 0 2 Nucleus 1 0.500231644014017 1 0.999536711971966 hm5C_site_17582 DeepMRMD:1;iRNA_m5C:0.999536711971966 17583 chr19 18679354 18679354 1 + C T BLCA 18679364 + 18679344 18679384 41 TGAGCCCCGGCTTCGAGGACCTGTCCCATGTCCAGCCTGGC TGAGCCCCGGTTTCGAGGACCTGTCCCATGTCCAGCCTGGC < 41bp 1 0.136621262702087 1 0.197561919689178 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KXD1 ENSG00000105700 CDS Human protein_coding chr19:18679364 chr19:18679354 synonymous SNV . 0 11 hm5C_associated_SNPs_15995 0 0 1 0 0 Ribosome 1 0.500231650020127 1 0.999536699959745 hm5C_site_17583 DeepMRMD:1;iRNA_m5C:0.999536699959745 17584 chr16 4431764 4431764 1 + G A BLCA 4431752 + 4431732 4431772 41 GCCTCTTCCCCCGCCTGCGGCTGCTGGCAGCTGCCCGCAAC GCCTCTTCCCCCGCCTGCGGCTGCTGGCAGCTACCCGCAAC < 41bp 1 0.547832786721725 1 0.0976755321025848 experiment 0.90433442655655 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VASN ENSG00000168140 CDS Human protein_coding chr16:4431752 chr16:4431764 nonsynonymous SNV 0.997 3 33 hm5C_associated_SNPs_15997 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17584 DeepMRMD:1;iRNA_m5C:0.999536712157815 17585 chr17 43182991 43182991 1 + G C BLCA 43183002 + 43182982 43183022 41 CCTAGGTTGGACTGGTGCTACAATAACCAGTCACCAGTGCG CCTAGGTTGCACTGGTGCTACAATAACCAGTCACCAGTGCG < 41bp 1 0.356837304436895 1 0.151230722665787 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NMT1 ENSG00000136448 CDS Human protein_coding chr17:43183002 chr17:43182991 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_15998 0 0 1 0 1 Ribosome 1 0.500231643926581 1 0.999536712146837 hm5C_site_17585 DeepMRMD:1;iRNA_m5C:0.999536712146837 17586 chr17 28754486 28754486 1 + C T BLCA 28754477 + 28754457 28754497 41 TGAACCGAAATTTCCCAGACCAGTTTGTTCAGATCACAGAT TGAACCGAAATTTCCCAGACCAGTTTGTTTAGATCACAGAT < 41bp 1 0.0900196529081394 1 0.101308673620224 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28754477 chr17:28754486 stopgain 0.983 0 30 hm5C_associated_SNPs_15999 0 0 0 0 2 Nucleus 1 0.500231643921158 1 0.999536712157683 hm5C_site_17586 DeepMRMD:1;iRNA_m5C:0.999536712157683 17587 chr6 144109920 144109920 1 + G C BLCA 144109932 + 144109912 144109952 41 CAGCCTGAGACCCACAGTGGCAGAGCTACAAGCTCGAAGGA CAGCCTGACACCCACAGTGGCAGAGCTACAAGCTCGAAGGA < 41bp 1 0.373373320319635 1 0.363463044166565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHACTR2 ENSG00000112419 CDS Human protein_coding chr6:144109932 chr6:144109920 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_16000 0 0 1 0 1 Cytosol 1 0.500231643959665 1 0.999536712080669 hm5C_site_17587 DeepMRMD:1;iRNA_m5C:0.999536712080669 17588 chr2 3627712 3627712 1 + A T BLCA 3627693 + 3627673 3627713 41 TGCTTACCTTTTAAACTATTCTTTTAGCCGTACTCTGACAG TGCTTACCTTTTAAACTATTCTTTTAGCCGTACTCTGACTG < 41bp 1 0.0795402095358293 1 0.023492157459259 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS7 ENSG00000171863 CDS Human protein_coding chr2:3627693 chr2:3627712 synonymous SNV . 0 40 hm5C_associated_SNPs_16001 0 0 1 0 1 Nucleus 1 0.500231648532537 1 0.999536702934926 hm5C_site_17588 DeepMRMD:1;iRNA_m5C:0.999536702934926 17589 chr20 21362667 21362667 1 + C T BLCA 21362679 + 21362659 21362699 41 GTCCTCCTCCCCTTTTCCAGCAGCAAAGGTTTGACAGGTAA GTCCTCCTTCCCTTTTCCAGCAGCAAAGGTTTGACAGGTAA < 41bp 1 0.603529956870583 1 0.438811033964157 experiment 0.792940086258834 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRN2 ENSG00000088930 CDS Human protein_coding chr20:21362679 chr20:21362667 nonsynonymous SNV 0.994 4 9 hm5C_associated_SNPs_16002 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17589 DeepMRMD:1;iRNA_m5C:0.999536712157815 17590 chr7 135272739 135272739 1 + A G BLCA 135272723 + 135272703 135272743 41 ATCTAGGGGTGGCTCATCAGCGGCCCCCTCAACGCCAGGTG ATCTAGGGGTGGCTCATCAGCGGCCCCCTCAACGCCGGGTG < 41bp 1 0.499263357210934 1 0.500184297561646 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135272723 chr7:135272739 nonsynonymous SNV 0.997 2 37 hm5C_associated_SNPs_16003 0 0 1 0 1 Cytosol 1 0.500231643921092 0.999631404876708 0.999536712157815 hm5C_site_17590 DeepMRMD:0.999631404876708;iRNA_m5C:0.999536712157815 17591 chr10 43292282 43292282 1 + C T BLCA 43292264 + 43292244 43292284 41 GCGGAGGAAGCTGATGAAAGCAGTGAAGAAGAGGACTGCAC GCGGAGGAAGCTGATGAAAGCAGTGAAGAAGAGGACTGTAC < 41bp 1 0.584811638324669 1 0.417782962322235 experiment 0.830376723350661 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292264 chr10:43292282 synonymous SNV . 0 39 hm5C_associated_SNPs_16005 0 0 1 0 0 chromatin 1 0.500231650310687 1 0.999536699378627 hm5C_site_17591 DeepMRMD:1;iRNA_m5C:0.999536699378627 17592 chr22 38273924 38273924 1 + C A BLCA 38273930 + 38273910 38273950 41 ACAAAGAGCCCTTCCTGCAGCAGCTGAAGGTGTTTTCTGAT ACAAAGAGCCCTTCATGCAGCAGCTGAAGGTGTTTTCTGAT < 41bp 1 0.443463629851946 1 0.761246562004089 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38273930 chr22:38273924 nonsynonymous SNV 0.998 1 15 hm5C_associated_SNPs_16006 0 0 0 0 0 Cytosol 1 0.500231647853079 0.477506875991822 0.999536704293843 hm5C_site_17592 DeepMRMD:0.477506875991822;iRNA_m5C:0.999536704293843 17593 chr10 128817063 128817063 1 + G A BLCA 128817082 + 128817062 128817102 41 GGCTCGAAAAACAGGGTTTCCGGAGATAATCATGCCTGGTA GACTCGAAAAACAGGGTTTCCGGAGATAATCATGCCTGGTA < 41bp 1 0.484740252827364 1 0.893370032310486 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128817082 chr10:128817063 nonsynonymous SNV 0.898 3 2 hm5C_associated_SNPs_16007 0 0 1 0 2 Nucleus 1 0.500231643921092 0.213259935379028 0.999536712157815 hm5C_site_17593 DeepMRMD:0.213259935379028;iRNA_m5C:0.999536712157815 17594 chr14 56763459 56763459 1 + G A BLCA 56763475 + 56763455 56763495 41 CGCCGCCCGGCCTCAGTGTCCTGTGGGGCTCAACACCCTGG CGCCACCCGGCCTCAGTGTCCTGTGGGGCTCAACACCCTGG < 41bp 1 0.512631192312017 1 0.275097072124481 experiment 0.974737615375966 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PELI2 ENSG00000139946 CDS Human protein_coding chr14:56763475 chr14:56763459 nonsynonymous SNV 0.065 3 5 hm5C_associated_SNPs_16009 0 0 0 0 0 nucleus 1 0.500231643921157 1 0.999536712157685 hm5C_site_17594 DeepMRMD:1;iRNA_m5C:0.999536712157685 17595 chr16 3021896 3021896 1 + G A BLCA 3021876 + 3021856 3021896 41 GCACCTGCTGAGCGTGGGCTCCATCCTGCAGCTGCACGCCG GCACCTGCTGAGCGTGGGCTCCATCCTGCAGCTGCACGCCA < 41bp 1 0.108286030593901 1 0.0826186239719391 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAQR4 ENSG00000162073 CDS Human protein_coding chr16:3021876 chr16:3021896 nonsynonymous SNV 0.592 4 41 hm5C_associated_SNPs_16010 0 0 1 0 0 Ribosome 1 0.500292813153594 1 0.999414373692813 hm5C_site_17595 DeepMRMD:1;iRNA_m5C:0.999414373692813 17596 chr11 14865508 14865508 1 + C T BLCA 14865490 + 14865470 14865510 41 TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGTCA < 41bp 1 0.399431290755441 1 0.802390217781067 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14865490 chr11:14865508 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_16011 0 0 1 0 1 chromatin 1 0.500230323843267 0.395219564437866 0.999539352313466 hm5C_site_17596 DeepMRMD:0.395219564437866;iRNA_m5C:0.999539352313466 17597 chr11 20139724 20139724 1 + C T BLCA 20139725 + 20139705 20139745 41 GGCAGCCAACTACTCCAGCCCCCAGAGCTATGACAGCGACT GGCAGCCAACTACTCCAGCTCCCAGAGCTATGACAGCGACT < 41bp 1 0.0794162541179236 1 0.356244325637817 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20139725 chr11:20139724 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_16012 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17597 DeepMRMD:1;iRNA_m5C:0.999536712157815 17598 chr1 12317073 12317073 1 + C G BLCA 12317053 + 12317033 12317073 41 CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTC CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTG < 41bp 1 0.246432570094151 1 0.388894021511078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12317053 chr1:12317073 synonymous SNV . 0 41 hm5C_associated_SNPs_16013 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_17598 DeepMRMD:1;iRNA_m5C:0.999536712157814 17599 chr1 17272853 17272853 1 + G A BLCA 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCTGAGCGCCCTCAACAAGAGCCTTGC < 41bp 1 0.16052021329557 1 0.058063268661499 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272853 nonsynonymous SNV 0.943 3 31 hm5C_associated_SNPs_16014 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17599 DeepMRMD:1;iRNA_m5C:0.999536712157815 17600 chrX 73045990 73045990 1 + C G BLCA 73045992 - 73045972 73046012 41 TACACAGATGTGCCAGACTTCTGAGAAGCACCTGCCAGCAA TACACAGATGTGCCAGACTTCTCAGAAGCACCTGCCAGCAA < 41bp 1 0.490166460998295 1 0.599884569644928 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045992 chrX:73045990 . . 0 23 hm5C_associated_SNPs_16015 0 0 1 0 0 unknown 1 0.500179562449951 0.800230860710144 0.999640875100097 hm5C_site_17600 DeepMRMD:0.800230860710144;iRNA_m5C:0.999640875100097 17601 chrX 73045990 73045990 1 + C G BLCA 73045995 - 73045975 73046015 41 AAATACACAGATGTGCCAGACTTCTGAGAAGCACCTGCCAG AAATACACAGATGTGCCAGACTTCTCAGAAGCACCTGCCAG < 41bp 1 0.0893760379894214 1 0.0653793513774872 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045995 chrX:73045990 . . 0 26 hm5C_associated_SNPs_16016 0 0 1 0 0 unknown 1 0.499690772647085 1 1 hm5C_site_17601 DeepMRMD:1;iRNA_m5C:1 17602 chrX 73045990 73045990 1 + C G BLCA 73045999 - 73045979 73046019 41 CAAGAAATACACAGATGTGCCAGACTTCTGAGAAGCACCTG CAAGAAATACACAGATGTGCCAGACTTCTCAGAAGCACCTG < 41bp 1 0.189513519183685 1 0.462401658296585 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045999 chrX:73045990 . . 0 30 hm5C_associated_SNPs_16017 0 0 1 0 0 unknown 1 0.500230217279783 1 0.999539565440433 hm5C_site_17602 DeepMRMD:1;iRNA_m5C:0.999539565440433 17603 chrX 73045990 73045990 1 + C G BLCA 73046010 - 73045990 73046030 41 GAAGAATTAGACAAGAAATACACAGATGTGCCAGACTTCTG GAAGAATTAGACAAGAAATACACAGATGTGCCAGACTTCTC < 41bp 1 0.269749393538801 1 0.0749547183513641 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046010 chrX:73045990 . . 0 41 hm5C_associated_SNPs_16018 0 0 1 0 0 unknown 1 0.500232152669917 1 0.999535694660166 hm5C_site_17603 DeepMRMD:1;iRNA_m5C:0.999535694660166 17604 chr11 67378016 67378016 1 + G A BLCA 67378025 + 67378005 67378045 41 AAGCCCCGCCTGAAGCCCCCCTTCCCCGCAGACGTGGGTAA AAGCCCCGCCTAAAGCCCCCCTTCCCCGCAGACGTGGGTAA < 41bp 1 0.0933790167835557 1 0.317881375551224 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378025 chr11:67378016 synonymous SNV . 0 12 hm5C_associated_SNPs_16019 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17604 DeepMRMD:1;iRNA_m5C:0.999536712157815 17605 chr22 41742178 41742178 1 + A G BLCA 41742194 + 41742174 41742214 41 CTGAAGGAGCACCAGGGCATCTTCACCTTCCTCTGCGAGGT CTGAGGGAGCACCAGGGCATCTTCACCTTCCTCTGCGAGGT < 41bp 1 0.351223403719557 1 0.110107630491257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41742194 chr22:41742178 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_16020 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643445075 1 0.99953671310985 hm5C_site_17605 DeepMRMD:1;iRNA_m5C:0.99953671310985 17606 chr10 105174887 105174887 1 + C G BLCA 105174899 + 105174879 105174919 41 TACCACATCGGGGATGAGGTCAAGTGCCGGGTGAGCCTCCT TACCACATGGGGGATGAGGTCAAGTGCCGGGTGAGCCTCCT < 41bp 1 0.551015556773272 1 0.711806654930115 experiment 0.897968886453455 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105174899 chr10:105174887 nonsynonymous SNV 0.010 0 9 hm5C_associated_SNPs_16021 0 0 1 0 1 Nucleus 1 0.500231643921113 0.57638669013977 0.999536712157774 hm5C_site_17606 DeepMRMD:0.57638669013977;iRNA_m5C:0.999536712157774 17607 chr13 77574706 77574706 1 + G C BLCA 77574692 + 77574672 77574712 41 AGCCAGCCCAGAAAAGGGGGCAGAGACATGGTTTGATTCCT AGCCAGCCCAGAAAAGGGGGCAGAGACATGGTTTCATTCCT < 41bp 1 0.309890214014537 1 0.39833003282547 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77574692 chr13:77574706 nonsynonymous SNV 0.981 4 35 hm5C_associated_SNPs_16022 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17607 DeepMRMD:1;iRNA_m5C:0.999536712157815 17608 chr7 150034005 150034005 1 + C T BLCA 150034008 + 150033988 150034028 41 GACTGCAGATCACACCCCAGCTGCTGAAGTCACGCACAGGC GACTGCAGATCACACCCTAGCTGCTGAAGTCACGCACAGGC < 41bp 1 0.584160582451342 1 0.151334881782532 experiment 0.831678835097317 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRRC61 ENSG00000127399 CDS Human protein_coding chr7:150034008 chr7:150034005 stopgain 0.978 0 18 hm5C_associated_SNPs_16023 0 0 0 0 0 Cytosol 1 0.500231643943724 1 0.999536712112552 hm5C_site_17608 DeepMRMD:1;iRNA_m5C:0.999536712112552 17609 chr7 33014899 33014899 1 + G T BLCA 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCCCCCGATTTGCCCTCG < 41bp 1 0.551942427099499 1 0.760094523429871 experiment 0.896115145801001 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014899 nonsynonymous SNV 0.939 0 32 hm5C_associated_SNPs_16024 0 0 0 0 1 Ribosome 1 0.500231609255835 0.479810953140258 0.999536781488331 hm5C_site_17609 DeepMRMD:0.479810953140258;iRNA_m5C:0.999536781488331 17610 chr7 33014899 33014899 1 + G T BLCA 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCCCCCGATTTGCCCTCGGACC < 41bp 1 0.0749058082341022 1 0.105390161275864 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014899 nonsynonymous SNV 0.939 0 28 hm5C_associated_SNPs_16025 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17610 DeepMRMD:1;iRNA_m5C:0.999536712157815 17611 chr4 115589295 115589295 1 + A G BLCA 115589284 + 115589264 115589304 41 CTGAGCCATGGTGGTTTGAACAGTATTTTTGAAACTATATA CTGAGCCATGGTGGTTTGAACAGTATTTTTGGAACTATATA < 41bp 1 0.468987812464317 1 0.092190146446228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UGT8 ENSG00000174607 CDS Human protein_coding chr4:115589284 chr4:115589295 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_16026 0 0 0 0 1 Ribosome 1 0.500231643924464 1 0.999536712151073 hm5C_site_17611 DeepMRMD:1;iRNA_m5C:0.999536712151073 17612 chr11 126279195 126279195 1 + C T BLCA 126279193 + 126279173 126279213 41 GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCCT GTTTCTGGAAACAGCCTCCCCTTATCTGGGATGTCAATCCT < 41bp 1 0.148791243076098 1 0.0457126498222351 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126279193 chr11:126279195 synonymous SNV . 0 23 hm5C_associated_SNPs_16027 0 0 1 0 1 Ribosome 1 0.500231643921029 1 0.999536712157942 hm5C_site_17612 DeepMRMD:1;iRNA_m5C:0.999536712157942 17613 chr22 21965299 21965299 1 + G T BLCA 21965319 + 21965299 21965339 41 GAAAACTGGAAGCCAGCAACCAAAACCGACCAAGGTAAGAC TAAAACTGGAAGCCAGCAACCAAAACCGACCAAGGTAAGAC < 41bp 1 0.605857707831504 1 0.782130002975464 experiment 0.788284584336993 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2L3 ENSG00000185651 CDS Human protein_coding chr22:21965319 chr22:21965299 stopgain 1.000 1 1 hm5C_associated_SNPs_16028 0 0 1 1 1 Ribosome 1 0.500231643921092 0.435739994049072 0.999536712157815 hm5C_site_17613 DeepMRMD:0.435739994049072;iRNA_m5C:0.999536712157815 17614 chr15 59348035 59348035 1 + G A BLCA 59348026 + 59348006 59348046 41 ATGCAGCAGAAGTTGTGGACCTTACCGTTGATGAAGATGGT ATGCAGCAGAAGTTGTGGACCTTACCGTTAATGAAGATGGT < 41bp 1 0.0372481975947937 1 0.0797645151615143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF111 ENSG00000157450 CDS Human protein_coding chr15:59348026 chr15:59348035 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_16029 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_17614 DeepMRMD:1;iRNA_m5C:0.999536712157815 17615 chr8 145537210 145537210 1 + G A BLCA 145537206 + 145537186 145537226 41 TCCCGGGCCAGGAATGAGCTCAGTGACCACTTGGATGCTAT TCCCGGGCCAGGAATGAGCTCAGTAACCACTTGGATGCTAT < 41bp 1 0.40886730297301 1 0.202686965465546 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145537206 chr8:145537210 nonsynonymous SNV 0.891 1 25 hm5C_associated_SNPs_16030 0 0 1 0 2 chromatin 1 0.500231644245032 1 0.999536711509937 hm5C_site_17615 DeepMRMD:1;iRNA_m5C:0.999536711509937 17616 chr22 38201748 38201748 1 + C T BLCA 38201755 + 38201735 38201775 41 GAGAACGCTGACTCGCAGATCAAGTTGTCCATCAAGCGCCT GAGAACGCTGACTTGCAGATCAAGTTGTCCATCAAGCGCCT < 41bp 1 0.512478272125613 1 0.245113521814346 experiment 0.975043455748774 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control H1F0 ENSG00000189060 CDS Human protein_coding chr22:38201755 chr22:38201748 nonsynonymous SNV 0.996 0 14 hm5C_associated_SNPs_16031 0 0 1 0 0 Ribosome 1 0.500231599266622 1 0.999536801466756 hm5C_site_17616 DeepMRMD:1;iRNA_m5C:0.999536801466756 17617 chr16 845787 845787 1 + G C BLCA 845778 + 845758 845798 41 GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC GCCGGGCCACGCCCCAGGCCCTGCTCCTCCATGCCCTCTGC < 41bp 1 0.427126962304844 1 0.0406796932220459 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845778 chr16:845787 nonsynonymous SNV 0.006 4 30 hm5C_associated_SNPs_16032 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17617 DeepMRMD:1;iRNA_m5C:0.999536712157815 17618 chr12 51449971 51449971 1 + G C BLCA 51449969 + 51449949 51449989 41 CAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAAC CAATACATGATATCTTGGCTCTCAGAGAGTGTTTCTCTAAC < 41bp 1 0.553815754433118 1 0.195650696754456 experiment 0.892368491133764 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449969 chr12:51449971 synonymous SNV . 0 23 hm5C_associated_SNPs_16033 0 0 1 0 2 chromatin 1 0.500231643920618 1 0.999536712158763 hm5C_site_17618 DeepMRMD:1;iRNA_m5C:0.999536712158763 17619 chr8 21844747 21844747 1 + G A BLCA 21844767 + 21844747 21844787 41 GTAAGATCTACATTGGGGACCAAGTGCAGAAATCCTCTAAG ATAAGATCTACATTGGGGACCAAGTGCAGAAATCCTCTAAG < 41bp 1 0.327786803990291 1 0.46998855471611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21844767 chr8:21844747 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_16034 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17619 DeepMRMD:1;iRNA_m5C:0.999536712157815 17620 chr15 48626677 48626677 1 + G A BLCA 48626680 + 48626660 48626700 41 ACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAG ACGGACATTCAGATAGCACTCCCTTCTGGGTGTTATGGAAG < 41bp 1 0.15373374602321 1 0.0906699895858765 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626680 chr15:48626677 synonymous SNV . 0 18 hm5C_associated_SNPs_16035 0 0 1 0 2 Cytosol 1 0.500231643974377 1 0.999536712051245 hm5C_site_17620 DeepMRMD:1;iRNA_m5C:0.999536712051245 17621 chr15 48626677 48626677 1 + G A BLCA 48626682 + 48626662 48626702 41 GGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAG GGACATTCAGATAGCACTCCCTTCTGGGTGTTATGGAAGAG < 41bp 1 0.205977749613946 1 0.111676067113876 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626682 chr15:48626677 synonymous SNV . 0 16 hm5C_associated_SNPs_16036 0 0 1 0 2 Cytosol 1 0.500231643859448 1 0.999536712281103 hm5C_site_17621 DeepMRMD:1;iRNA_m5C:0.999536712281103 17622 chr15 48626677 48626677 1 + G A BLCA 48626685 + 48626665 48626705 41 CATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAGTGG CATTCAGATAGCACTCCCTTCTGGGTGTTATGGAAGAGTGG < 41bp 1 0.673305016286378 1 0.74135810136795 experiment 0.653389967427245 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626685 chr15:48626677 synonymous SNV . 0 13 hm5C_associated_SNPs_16037 0 0 1 0 2 Cytosol 1 0.500231643921092 0.5172837972641 0.999536712157815 hm5C_site_17622 DeepMRMD:0.5172837972641;iRNA_m5C:0.999536712157815 17623 chr17 34958603 34958603 1 + G C BLCA 34958622 + 34958602 34958642 41 GGAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCG GCAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCG < 41bp 1 0.494912590267771 1 0.425182163715363 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM1 ENSG00000129282 CDS Human other chr17:34958622 chr17:34958603 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_16038 0 0 1 0 1 nucleolus 1 0.500231643920825 1 0.99953671215835 hm5C_site_17623 DeepMRMD:1;iRNA_m5C:0.99953671215835 17624 chr17 34958603 34958603 1 + G C BLCA 34958623 + 34958603 34958643 41 GAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCGG CAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCGG < 41bp 1 0.347036992960653 1 0.312369823455811 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM1 ENSG00000129282 CDS Human other chr17:34958623 chr17:34958603 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_16039 0 0 1 0 1 nucleolus 1 0.50023164392135 1 0.9995367121573 hm5C_site_17624 DeepMRMD:1;iRNA_m5C:0.9995367121573 17625 chr19 14037643 14037643 1 + C G BLCA 14037657 + 14037637 14037677 41 GAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA GAAGCTGAGAAAGACAAGACCAGTGTGATCAAGAACACAGA < 41bp 1 0.264264322521608 1 0.195781618356705 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14037657 chr19:14037643 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_16040 0 0 0 0 2 chromatin 1 0.500231648420055 1 0.999536703159891 hm5C_site_17625 DeepMRMD:1;iRNA_m5C:0.999536703159891 17626 chr2 47639699 47639699 1 + G T BLCA 47639697 + 47639677 47639717 41 TATTGCCAGAAATGGAGAATCAGGTACATGGATTATAAATG TATTGCCAGAAATGGAGAATCATGTACATGGATTATAAATG < 41bp 1 0.145207495076188 1 0.0758692026138306 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSH2 ENSG00000095002 CDS Human protein_coding chr2:47639697 chr2:47639699 nonsynonymous SNV 0.932 5 23 hm5C_associated_SNPs_16041 0 0 1 0 1 Cytosol 1 0.500231643891766 1 0.999536712216468 hm5C_site_17626 DeepMRMD:1;iRNA_m5C:0.999536712216468 17627 chr3 184106402 184106402 1 + G A BLCA 184106407 + 184106387 184106427 41 CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGATGGGCCC CCCACCCCCAGCTGGAGGACCCCATGCAGGCTGATGGGCCC < 41bp 1 0.181192939957486 1 0.212194859981537 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184106407 chr3:184106402 nonsynonymous SNV 0.964 0 16 hm5C_associated_SNPs_16043 0 0 1 0 1 nucleus 1 0.500231646354558 1 0.999536707290883 hm5C_site_17627 DeepMRMD:1;iRNA_m5C:0.999536707290883 17628 chr5 140573639 140573639 1 + C T BLCA 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TTCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC < 41bp 1 0.196416930707039 1 0.0738070011138916 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573639 nonsynonymous SNV 0.907 3 2 hm5C_associated_SNPs_16044 0 0 0 0 0 exosome 1 0.500231643921139 1 0.999536712157722 hm5C_site_17628 DeepMRMD:1;iRNA_m5C:0.999536712157722 17629 chr2 109104177 109104177 1 + C T BLCA 109104161 + 109104141 109104181 41 TTTAAATGTTATAGGCAGAACAAGCTACTGTAACCTCTGAA TTTAAATGTTATAGGCAGAACAAGCTACTGTAACCTTTGAA < 41bp 1 0.179069450600545 1 0.355598747730255 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GCC2 ENSG00000135968 CDS Human protein_coding chr2:109104161 chr2:109104177 nonsynonymous SNV 0.996 4 37 hm5C_associated_SNPs_16045 0 0 1 0 2 chromatin 1 0.500231643916286 1 0.999536712167427 hm5C_site_17629 DeepMRMD:1;iRNA_m5C:0.999536712167427 17630 chr13 76124114 76124114 1 + C T BLCA 76124116 + 76124096 76124136 41 TCTGTTTCGTTTTCAGGTCACCAACCAGGTGAGTGAGGTGT TCTGTTTCGTTTTCAGGTTACCAACCAGGTGAGTGAGGTGT < 41bp 1 0.203656877492407 1 0.103965044021606 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UCHL3 ENSG00000118939 CDS Human protein_coding chr13:76124116 chr13:76124114 synonymous SNV . 0 19 hm5C_associated_SNPs_16046 0 0 1 0 2 Ribosome 1 0.500232019871686 1 0.999535960256629 hm5C_site_17630 DeepMRMD:1;iRNA_m5C:0.999535960256629 17631 chr13 76124114 76124114 1 + C T BLCA 76124117 + 76124097 76124137 41 CTGTTTCGTTTTCAGGTCACCAACCAGGTGAGTGAGGTGTC CTGTTTCGTTTTCAGGTTACCAACCAGGTGAGTGAGGTGTC < 41bp 1 0.459652091446004 1 0.256692230701447 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UCHL3 ENSG00000118939 CDS Human protein_coding chr13:76124117 chr13:76124114 synonymous SNV . 0 18 hm5C_associated_SNPs_16047 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17631 DeepMRMD:1;iRNA_m5C:0.999536712157815 17632 chr17 64961111 64961111 1 + C T BLCA 64961096 + 64961076 64961116 41 GCCTTCGCCGCCTTCTCGCTCATGGCCATCGCCATCGGCAC GCCTTCGCCGCCTTCTCGCTCATGGCCATCGCCATTGGCAC < 41bp 1 0.55548945878667 1 0.249370127916336 experiment 0.88902108242666 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CACNG4 ENSG00000075461 CDS Human protein_coding chr17:64961096 chr17:64961111 synonymous SNV . 0 36 hm5C_associated_SNPs_16048 0 0 0 0 0 Endoplasmic reticulum 1 0.5002316454939 1 0.9995367090122 hm5C_site_17632 DeepMRMD:1;iRNA_m5C:0.9995367090122 17633 chr2 219679343 219679343 1 + C T BLCA 219679360 + 219679340 219679380 41 CCCCACCGCTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG CCCTACCGCTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG < 41bp 1 0.49020668532601 1 0.292372673749924 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219679360 chr2:219679343 nonsynonymous SNV 0.402 0 4 hm5C_associated_SNPs_16049 0 0 1 0 1 cytosol 1 0.500231643921093 1 0.999536712157813 hm5C_site_17633 DeepMRMD:1;iRNA_m5C:0.999536712157813 17634 chr1 110456967 110456967 1 + G A BLCA 110456962 + 110456942 110456982 41 AGGTGTCGGAGTACTGTAGCCACATGATTGGGAGTGGACAC AGGTGTCGGAGTACTGTAGCCACATAATTGGGAGTGGACAC < 41bp 1 0.433354823567618 1 0.497323602437973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110456962 chr1:110456967 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_16050 0 0 1 0 2 chromatin 1 0.500230001421876 1 0.999539997156248 hm5C_site_17634 DeepMRMD:1;iRNA_m5C:0.999539997156248 17635 chr19 41770565 41770565 1 + G C BLCA 41770577 + 41770557 41770597 41 CCGACGACGAACCGGGGCGACCCGGGCACATCAACGAGGAG CCGACGACCAACCGGGGCGACCCGGGCACATCAACGAGGAG < 41bp 1 0.415527158403482 1 0.261041343212128 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41770577 chr19:41770565 nonsynonymous SNV 0.274 0 9 hm5C_associated_SNPs_16051 0 0 1 0 1 Cytosol 1 0.500231752557781 1 0.999536494884439 hm5C_site_17635 DeepMRMD:1;iRNA_m5C:0.999536494884439 17636 chr19 41770565 41770565 1 + G C BLCA 41770578 + 41770558 41770598 41 CGACGACGAACCGGGGCGACCCGGGCACATCAACGAGGAGG CGACGACCAACCGGGGCGACCCGGGCACATCAACGAGGAGG < 41bp 1 0.58795065451481 1 0.481073260307312 experiment 0.824098690970381 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41770578 chr19:41770565 nonsynonymous SNV 0.274 0 8 hm5C_associated_SNPs_16052 0 0 1 0 1 Cytosol 1 0.500231643921166 1 0.999536712157668 hm5C_site_17636 DeepMRMD:1;iRNA_m5C:0.999536712157668 17637 chr19 41770565 41770565 1 + G C BLCA 41770579 + 41770559 41770599 41 GACGACGAACCGGGGCGACCCGGGCACATCAACGAGGAGGT GACGACCAACCGGGGCGACCCGGGCACATCAACGAGGAGGT < 41bp 1 0.689746024850736 1 0.646933495998383 experiment 0.620507950298527 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41770579 chr19:41770565 nonsynonymous SNV 0.274 0 7 hm5C_associated_SNPs_16053 0 0 1 0 1 Cytosol 1 0.50023158692852 0.706133008003234 0.999536826142961 hm5C_site_17637 DeepMRMD:0.706133008003234;iRNA_m5C:0.999536826142961 17638 chr3 49742439 49742439 1 + T C BLCA 49742448 + 49742428 49742468 41 GGCCCTGGCTGTTGGGGGGCCACTGCCCCTGCCCCGGCCCG GGCCCTGGCTGCTGGGGGGCCACTGCCCCTGCCCCGGCCCG < 41bp 1 0.431428241062459 1 0.494230687618256 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742448 chr3:49742439 nonsynonymous SNV 0.209 0 12 hm5C_associated_SNPs_16054 0 0 1 0 1 Nucleus 1 0.5002315146023 1 0.9995369707954 hm5C_site_17638 DeepMRMD:1;iRNA_m5C:0.9995369707954 17639 chr17 4905823 4905823 1 + C G BLCA 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTGTCTGCGGGTCCGGGAGCACCCCATCCTGGG < 41bp 1 0.544004760116223 1 0.644052505493164 experiment 0.911990479767555 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905823 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_16056 0 0 1 0 1 Ribosome 1 0.500231643921091 0.711894989013672 0.999536712157818 hm5C_site_17639 DeepMRMD:0.711894989013672;iRNA_m5C:0.999536712157818 17640 chr11 44129413 44129413 1 + G T BLCA 44129403 + 44129383 44129423 41 GGCATGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAA GGCATGTTTCAGTTTTGGCCCCATTCTATCTAGTCCTCAAA < 41bp 1 0.0339989835348033 1 0.0297065377235413 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129403 chr11:44129413 stopgain 0.999 1 31 hm5C_associated_SNPs_16057 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920923 1 0.999536712158154 hm5C_site_17640 DeepMRMD:1;iRNA_m5C:0.999536712158154 17641 chr11 44129413 44129413 1 + G T BLCA 44129404 + 44129384 44129424 41 GCATGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAAT GCATGTTTCAGTTTTGGCCCCATTCTATCTAGTCCTCAAAT < 41bp 1 0.02783404277409 1 0.0577836632728577 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129404 chr11:44129413 stopgain 0.999 1 30 hm5C_associated_SNPs_16058 0 0 1 0 0 Endoplasmic reticulum 1 0.500231593978274 1 0.999536812043453 hm5C_site_17641 DeepMRMD:1;iRNA_m5C:0.999536812043453 17642 chr3 188242482 188242482 1 + G A BLCA 188242472 + 188242452 188242492 41 GGGGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCA GGGGAATCCCGGAGGCAAGACACTTGAGGAAAGGCGCTCCA < 41bp 1 0.200770379493223 1 0.0378702878952026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPP ENSG00000145012 CDS Human protein_coding chr3:188242472 chr3:188242482 synonymous SNV . 0 31 hm5C_associated_SNPs_16060 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_17642 DeepMRMD:1;iRNA_m5C:0.999536712157816 17643 chr1 6505938 6505938 1 + C G BLCA 6505928 + 6505908 6505948 41 GCCTCCTGTAGGACCACAGGCAGCTGACATCTACATGCAGA GCCTCCTGTAGGACCACAGGCAGCTGACATGTACATGCAGA < 41bp 1 0.302837668077089 1 0.611524283885956 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESPN ENSG00000187017 CDS Human protein_coding chr1:6505928 chr1:6505938 nonsynonymous SNV 0.912 4 31 hm5C_associated_SNPs_16061 0 0 1 0 1 Ribosome 1 0.500231643921092 0.776951432228088 0.999536712157816 hm5C_site_17643 DeepMRMD:0.776951432228088;iRNA_m5C:0.999536712157816 17644 chr4 56230312 56230312 1 + G A BLCA 56230318 + 56230298 56230338 41 TACGAAGACTCTTCGAGTGCCTCTACGTCAGTGTCTTCTCC TACGAAGACTCTTCAAGTGCCTCTACGTCAGTGTCTTCTCC < 41bp 1 0.507874137293578 1 0.134117424488068 experiment 0.984251725412844 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56230318 chr4:56230312 nonsynonymous SNV 0.656 4 15 hm5C_associated_SNPs_16062 1 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_17644 DeepMRMD:1;iRNA_m5C:0.999536712157814 not provided not provided 17645 chr3 128631370 128631370 1 + G A BLCA 128631356 + 128631336 128631376 41 CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATGAGCAGA CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATAAGCAGA < 41bp 1 0.511157054362027 1 0.560437440872192 experiment 0.977685891275946 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128631356 chr3:128631370 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_16063 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921114 0.879125118255616 0.999536712157771 hm5C_site_17645 DeepMRMD:0.879125118255616;iRNA_m5C:0.999536712157771 17646 chr7 2686589 2686589 1 + G A BLCA 2686570 + 2686550 2686590 41 TTCTACTCCTTCTGGCTGTGCTGCCGGCGGCGCAAGAGCGA TTCTACTCCTTCTGGCTGTGCTGCCGGCGGCGCAAGAGCAA < 41bp 1 0.379512565749068 1 0.385442107915878 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686570 chr7:2686589 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_16064 0 0 1 0 1 Ribosome 1 0.500231646277985 1 0.999536707444031 hm5C_site_17646 DeepMRMD:1;iRNA_m5C:0.999536707444031 17647 chr11 118369132 118369132 1 + C T BLCA 118369113 + 118369093 118369133 41 ATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCA ATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTTA < 41bp 1 0.0241337783073291 1 0.198178499937057 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118369113 chr11:118369132 synonymous SNV . 0 40 hm5C_associated_SNPs_16065 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157811 hm5C_site_17647 DeepMRMD:1;iRNA_m5C:0.999536712157811 17648 chr12 56347534 56347534 1 + C A BLCA 56347519 + 56347499 56347539 41 ATGCTCATGGGCCCACCCCCCCGCTCCACCAATTTCTTTGG ATGCTCATGGGCCCACCCCCCCGCTCCACCAATTTATTTGG < 41bp 1 0.335984233891604 1 0.515404343605042 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56347519 chr12:56347534 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_16066 0 0 1 0 1 Cytosol 1 0.500231643920854 0.969191312789916 0.999536712158293 hm5C_site_17648 DeepMRMD:0.969191312789916;iRNA_m5C:0.999536712158293 17649 chr1 22333440 22333440 1 + C A BLCA 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTAC < 41bp 1 0.116401568793908 1 0.265857458114624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333440 synonymous SNV . 0 40 hm5C_associated_SNPs_16068 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392113 1 0.99953671215774 hm5C_site_17649 DeepMRMD:1;iRNA_m5C:0.99953671215774 17650 chr1 22333440 22333440 1 + C A BLCA 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTACC < 41bp 1 0.278017877933444 1 0.546331167221069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333440 synonymous SNV . 0 39 hm5C_associated_SNPs_16069 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921297 0.907337665557862 0.999536712157405 hm5C_site_17650 DeepMRMD:0.907337665557862;iRNA_m5C:0.999536712157405 17651 chr1 22333440 22333440 1 + C A BLCA 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTACCTCC < 41bp 1 0.344296642083931 1 0.279507696628571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333440 synonymous SNV . 0 36 hm5C_associated_SNPs_16070 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921097 1 0.999536712157805 hm5C_site_17651 DeepMRMD:1;iRNA_m5C:0.999536712157805 17652 chr1 22333440 22333440 1 + C A BLCA 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTACCTCCC < 41bp 1 0.4957151401336 1 0.638782978057861 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333440 synonymous SNV . 0 35 hm5C_associated_SNPs_16071 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921191 0.722434043884278 0.999536712157618 hm5C_site_17652 DeepMRMD:0.722434043884278;iRNA_m5C:0.999536712157618 17653 chr1 22333440 22333440 1 + C A BLCA 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCGTCCAGCTCGCCTCACTACCTCCCGCT < 41bp 1 0.621252242102468 1 0.422826141119003 experiment 0.757495515795064 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333440 synonymous SNV . 0 32 hm5C_associated_SNPs_16072 0 0 0 0 2 Endoplasmic reticulum 1 0.500231632073196 1 0.999536735853608 hm5C_site_17653 DeepMRMD:1;iRNA_m5C:0.999536735853608 17654 chr1 22333440 22333440 1 + C A BLCA 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTG < 41bp 1 0.254152114919128 1 0.117845356464386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333440 synonymous SNV . 0 28 hm5C_associated_SNPs_16074 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921098 1 0.999536712157804 hm5C_site_17654 DeepMRMD:1;iRNA_m5C:0.999536712157804 17655 chr1 22333440 22333440 1 + C A BLCA 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGA < 41bp 1 0.244619731293236 1 0.285976469516754 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333440 synonymous SNV . 0 27 hm5C_associated_SNPs_16075 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644010817 1 0.999536711978366 hm5C_site_17655 DeepMRMD:1;iRNA_m5C:0.999536711978366 17656 chr1 22333440 22333440 1 + C A BLCA 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACA < 41bp 1 0.4479659189606 1 0.35692298412323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333440 synonymous SNV . 0 25 hm5C_associated_SNPs_16076 0 0 0 0 2 Endoplasmic reticulum 1 0.500231185501708 1 0.999537628996585 hm5C_site_17656 DeepMRMD:1;iRNA_m5C:0.999537628996585 17657 chr1 22333440 22333440 1 + C A BLCA 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACATC < 41bp 1 0.269594780547981 1 0.0731257200241089 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333440 synonymous SNV . 0 23 hm5C_associated_SNPs_16077 0 0 0 0 2 Endoplasmic reticulum 1 0.50023121592796 1 0.99953756814408 hm5C_site_17657 DeepMRMD:1;iRNA_m5C:0.99953756814408 17658 chr1 22333440 22333440 1 + C A BLCA 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTT < 41bp 1 0.0582959441686175 1 0.0263457298278809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333440 synonymous SNV . 0 20 hm5C_associated_SNPs_16078 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17658 DeepMRMD:1;iRNA_m5C:0.999536712157815 17659 chr1 22333440 22333440 1 + C A BLCA 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTTC < 41bp 1 0.440578750205578 1 0.402382850646973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333440 synonymous SNV . 0 19 hm5C_associated_SNPs_16079 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164300776 1 0.99953671398448 hm5C_site_17659 DeepMRMD:1;iRNA_m5C:0.99953671398448 17660 chr1 22333440 22333440 1 + C A BLCA 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTTCCC < 41bp 1 0.383868885025826 1 0.357888728380203 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333440 synonymous SNV . 0 17 hm5C_associated_SNPs_16080 0 0 0 0 2 Endoplasmic reticulum 1 0.500231667607041 1 0.999536664785917 hm5C_site_17660 DeepMRMD:1;iRNA_m5C:0.999536664785917 17661 chr1 22333440 22333440 1 + C A BLCA 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTTCCCA < 41bp 1 0.33705637030339 1 0.267745137214661 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333440 synonymous SNV . 0 16 hm5C_associated_SNPs_16081 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17661 DeepMRMD:1;iRNA_m5C:0.999536712157815 17662 chr1 22333440 22333440 1 + C A BLCA 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTCGCCTCACTACCTCCCGCTGGTGACATCCTTCCCAA < 41bp 1 0.642496725352132 1 0.681260406970978 experiment 0.715006549295736 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333440 synonymous SNV . 0 15 hm5C_associated_SNPs_16082 0 0 0 0 2 Endoplasmic reticulum 1 0.50023241308927 0.637479186058044 0.999535173821461 hm5C_site_17662 DeepMRMD:0.637479186058044;iRNA_m5C:0.999535173821461 17663 chr10 104129979 104129979 1 + G C BLCA 104129996 + 104129976 104130016 41 CTGGAGTCACTACAGGAGCTCATGAAGGTAAAGGATGAAGA CTGCAGTCACTACAGGAGCTCATGAAGGTAAAGGATGAAGA < 41bp 1 0.219337758582516 1 0.184021890163422 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129996 chr10:104129979 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_16084 0 0 1 0 2 Nucleus 1 0.500231643926593 1 0.999536712146814 hm5C_site_17663 DeepMRMD:1;iRNA_m5C:0.999536712146814 17664 chr6 33411122 33411122 1 + C T BLCA 33411133 + 33411113 33411153 41 GAACCCTCTCTTCCACATGGCTGCTGATGGGCCAGGTCCCC GAACCCTCTTTTCCACATGGCTGCTGATGGGCCAGGTCCCC < 41bp 1 0.20012761879628 1 0.0216740965843201 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33411133 chr6:33411122 synonymous SNV . 0 10 hm5C_associated_SNPs_16085 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_17664 DeepMRMD:1;iRNA_m5C:0.999536712157815 17665 chr16 30953717 30953717 1 + C G BLCA 30953726 + 30953706 30953746 41 GCTGGTGCTCTCTGGCTGCTCCTGGCTCTCTGTCTCTGCCC GCTGGTGCTCTGTGGCTGCTCCTGGCTCTCTGTCTCTGCCC < 41bp 1 0.466028957996939 1 0.197158813476562 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30953726 chr16:30953717 nonsynonymous SNV 0.992 0 12 hm5C_associated_SNPs_16086 0 0 1 0 1 chromatin 1 0.500231643920682 1 0.999536712158636 hm5C_site_17665 DeepMRMD:1;iRNA_m5C:0.999536712158636 17666 chr6 11575764 11575764 1 + C G BLCA 11575784 + 11575764 11575804 41 CTCCTTTTCAAGGATCCTCGCTACACTTTGAGGTTTCTGTG GTCCTTTTCAAGGATCCTCGCTACACTTTGAGGTTTCTGTG < 41bp 1 0.541414941955145 1 0.231324553489685 experiment 0.917170116089709 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM170B ENSG00000205269 CDS Human protein_coding chr6:11575784 chr6:11575764 nonsynonymous SNV 0.996 4 1 hm5C_associated_SNPs_16087 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17666 DeepMRMD:1;iRNA_m5C:0.999536712157815 17667 chr8 145727029 145727029 1 + C T BLCA 145727024 + 145727004 145727044 41 GCTGAGCCCCCTGGACAGCACCACCCCCCACACCCTGGTCC GCTGAGCCCCCTGGACAGCACCACCTCCCACACCCTGGTCC < 41bp 1 0.164558990346557 1 0.0251566171646118 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145727024 chr8:145727029 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_16088 0 0 1 0 0 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_17667 DeepMRMD:1;iRNA_m5C:0.999536712157812 17668 chr7 43664257 43664257 1 + C A BLCA 43664244 + 43664224 43664264 41 TCCAAGAAGGTCATTCTGTGCCTGAAATTAATTCGGATACC TCCAAGAAGGTCATTCTGTGCCTGAAATTAATTAGGATACC < 41bp 1 0.341803248029603 1 0.241537153720856 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control STK17A ENSG00000164543 CDS Human protein_coding chr7:43664244 chr7:43664257 stopgain 0.917 0 34 hm5C_associated_SNPs_16089 0 0 1 0 0 Ribosome 1 0.50023164414336 1 0.999536711713279 hm5C_site_17668 DeepMRMD:1;iRNA_m5C:0.999536711713279 17669 chr5 92923700 92923700 1 + G T BLCA 92923717 + 92923697 92923737 41 AACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT AACTGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT < 41bp 1 0.335428480239083 1 0.36481511592865 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92923717 chr5:92923700 nonsynonymous SNV 0.998 1 4 hm5C_associated_SNPs_16090 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_17669 DeepMRMD:1;iRNA_m5C:0.999536712157816 17670 chr1 55452087 55452087 1 + C T BLCA 55452081 + 55452061 55452101 41 CACCTCTCCAGAGACCTGTACTACCTCACTGTGGAGTCCTC CACCTCTCCAGAGACCTGTACTACCTTACTGTGGAGTCCTC < 41bp 1 0.151011149076997 1 0.0915616452693939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55452081 chr1:55452087 synonymous SNV . 0 27 hm5C_associated_SNPs_16091 0 0 0 0 1 Cytosol 1 0.500231643921098 1 0.999536712157803 hm5C_site_17670 DeepMRMD:1;iRNA_m5C:0.999536712157803 17671 chr19 14580222 14580222 1 + C T BLCA 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTT < 41bp 1 0.0384741283246342 1 0.0937943756580353 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580222 synonymous SNV . 0 41 hm5C_associated_SNPs_16092 0 0 1 0 1 Ribosome 1 0.500247997608203 1 0.999504004783594 hm5C_site_17671 DeepMRMD:1;iRNA_m5C:0.999504004783594 17672 chr19 14580222 14580222 1 + C T BLCA 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTTG < 41bp 1 0.0229249341712729 1 0.0640327930450439 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580222 synonymous SNV . 0 40 hm5C_associated_SNPs_16093 0 0 1 0 1 Ribosome 1 0.500231643903555 1 0.99953671219289 hm5C_site_17672 DeepMRMD:1;iRNA_m5C:0.99953671219289 17673 chr19 14580222 14580222 1 + C T BLCA 14580207 + 14580187 14580227 41 ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTTGGCTG < 41bp 1 0.396508386240895 1 0.672582387924194 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580207 chr19:14580222 synonymous SNV . 0 36 hm5C_associated_SNPs_16094 0 0 1 0 1 Ribosome 1 0.500231643921092 0.654835224151612 0.999536712157815 hm5C_site_17673 DeepMRMD:0.654835224151612;iRNA_m5C:0.999536712157815 17674 chr11 85977208 85977208 1 + G C BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATCATGAA < 41bp 1 0.179394170147215 1 0.130336463451385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977208 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16095 0 0 1 13 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17674 DeepMRMD:1;iRNA_m5C:0.999536712157815 17675 chr21 45746744 45746744 1 + G A BLCA 45746749 + 45746729 45746769 41 TGGACAAGGGCTTCTGAGGCCAGCCATGCCCACGCCCCTCC TGGACAAGGGCTTCTAAGGCCAGCCATGCCCACGCCCCTCC < 41bp 1 0.672496004769122 1 0.197154551744461 experiment 0.655007990461756 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45746749 chr21:45746744 synonymous SNV . 0 16 hm5C_associated_SNPs_16096 0 0 1 0 0 Ribosome 1 0.500231643899208 1 0.999536712201584 hm5C_site_17675 DeepMRMD:1;iRNA_m5C:0.999536712201584 17676 chr11 85977209 85977209 1 + A T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGTTGAA < 41bp 1 0.163726994972108 1 0.0997744798660278 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977209 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16097 0 0 1 13 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17676 DeepMRMD:1;iRNA_m5C:0.999536712157815 17677 chr5 176863486 176863486 1 + C T BLCA 176863468 + 176863448 176863488 41 GAGGTGAAGGAGCACCCCCTCTTTAAGAAGCTGAACTTCAA GAGGTGAAGGAGCACCCCCTCTTTAAGAAGCTGAACTTTAA < 41bp 1 0.313296053644267 1 0.168404310941696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863468 chr5:176863486 synonymous SNV . 0 39 hm5C_associated_SNPs_16098 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17677 DeepMRMD:1;iRNA_m5C:0.999536712157815 17678 chr19 36278140 36278140 1 + G A BLCA 36278132 + 36278112 36278152 41 TCCTGCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC TCCTGCGCCCTGGGGGTGCCCCACCCCCACCCCCTAAGAAC < 41bp 1 0.164315909674417 1 0.200774192810059 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278132 chr19:36278140 synonymous SNV . 0 29 hm5C_associated_SNPs_16099 0 0 0 0 1 chromatin 1 0.500231643921393 1 0.999536712157215 hm5C_site_17678 DeepMRMD:1;iRNA_m5C:0.999536712157215 17679 chr11 9597625 9597625 1 + G C BLCA 9597628 + 9597608 9597648 41 GTGTCGTCGTAGAAAGAGAACGTATTGGAATGAGTAAGTCG GTGTCGTCGTAGAAAGACAACGTATTGGAATGAGTAAGTCG < 41bp 1 0.074860778965156 1 0.0902983248233795 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WEE1 ENSG00000166483 CDS Human protein_coding chr11:9597628 chr11:9597625 nonsynonymous SNV 0.965 1 18 hm5C_associated_SNPs_16101 0 0 1 0 1 Ribosome 1 0.50023212356068 1 0.999535752878641 hm5C_site_17679 DeepMRMD:1;iRNA_m5C:0.999535752878641 17680 chr14 102484885 102484885 1 + A T BLCA 102484872 + 102484852 102484892 41 TACGGCACCTTCAACCGCGCCATGCTGAGGCTCATTCCATC TACGGCACCTTCAACCGCGCCATGCTGAGGCTCTTTCCATC < 41bp 1 0.0667666027231045 1 0.0738312005996704 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484872 chr14:102484885 nonsynonymous SNV 0.633 2 34 hm5C_associated_SNPs_16102 0 0 1 0 2 Cytosol 1 0.500231642936225 1 0.99953671412755 hm5C_site_17680 DeepMRMD:1;iRNA_m5C:0.99953671412755 17681 chr2 32631587 32631587 1 + C T BLCA 32631577 + 32631557 32631597 41 TTGATTTAAGTGATGATTTACTGGAGGATTCAGACAGTGAA TTGATTTAAGTGATGATTTACTGGAGGATTTAGACAGTGAA < 41bp 1 0.284373992332005 1 0.728187680244446 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32631577 chr2:32631587 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_16103 0 0 1 0 2 Nucleus 1 0.500231653029467 0.543624639511108 0.999536693941066 hm5C_site_17681 DeepMRMD:0.543624639511108;iRNA_m5C:0.999536693941066 17682 chr5 64082363 64082363 1 + C G BLCA 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TGCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA < 41bp 1 0.413649795483411 1 0.821614146232605 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082363 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_16104 0 0 1 0 2 Nucleus 1 0.500232413250943 0.35677170753479 0.999535173498114 hm5C_site_17682 DeepMRMD:0.35677170753479;iRNA_m5C:0.999535173498114 17683 chrX 15822263 15822263 1 + G C BLCA 15822264 + 15822244 15822284 41 AGGAACAATGGGAAGAACAGCAGAGGAAAGAGAGAGAAGAG AGGAACAATGGGAAGAACACCAGAGGAAAGAGAGAGAAGAG < 41bp 1 0.646814843461457 1 0.61371386051178 experiment 0.706370313077085 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15822264 chrX:15822263 nonsynonymous SNV 0.996 2 20 hm5C_associated_SNPs_16105 0 0 1 0 2 Cytosol 1 0.500231632855501 0.77257227897644 0.999536734288999 hm5C_site_17683 DeepMRMD:0.77257227897644;iRNA_m5C:0.999536734288999 17684 chr12 109536302 109536302 1 + G A BLCA 109536312 + 109536292 109536332 41 CCTCGCCGCTGAGTGCCGAGCAGTTGGACCGGATCCAGAGG CCTCGCCGCTAAGTGCCGAGCAGTTGGACCGGATCCAGAGG < 41bp 1 0.504980173285952 1 0.416076898574829 experiment 0.990039653428096 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109536312 chr12:109536302 synonymous SNV . 0 11 hm5C_associated_SNPs_16106 0 0 1 0 1 Ribosome 1 0.500231473796953 1 0.999537052406094 hm5C_site_17684 DeepMRMD:1;iRNA_m5C:0.999537052406094 17685 chr19 47491290 47491290 1 + G C BLCA 47491274 + 47491254 47491294 41 ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGAT ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTCAGAT < 41bp 1 0.57616840091156 1 0.459208875894547 experiment 0.84766319817688 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491274 chr19:47491290 nonsynonymous SNV 0.938 1 37 hm5C_associated_SNPs_16107 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17685 DeepMRMD:1;iRNA_m5C:0.999536712157815 17686 chr19 47491290 47491290 1 + G C BLCA 47491283 + 47491263 47491303 41 ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT ATCTACCGGGTCAGCGGGAACAAGTCTCAGATGGAGAGTCT < 41bp 1 0.350783616332153 1 0.284594416618347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491283 chr19:47491290 nonsynonymous SNV 0.938 1 28 hm5C_associated_SNPs_16108 0 0 1 0 2 Ribosome 1 0.500231643963424 1 0.999536712073153 hm5C_site_17686 DeepMRMD:1;iRNA_m5C:0.999536712073153 17687 chr14 53173937 53173937 1 + C A BLCA 53173926 + 53173906 53173946 41 CCGGCATCCCCTATGAGAGACGGCTTCTCATCATGGCGGAC CCGGCATCCCCTATGAGAGACGGCTTCTCATAATGGCGGAC < 41bp 1 0.559744769238787 1 0.159252732992172 experiment 0.880510461522426 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53173926 chr14:53173937 synonymous SNV . 0 32 hm5C_associated_SNPs_16109 0 0 1 0 0 Ribosome 1 0.500231643920125 1 0.99953671215975 hm5C_site_17687 DeepMRMD:1;iRNA_m5C:0.99953671215975 17688 chr18 13645279 13645279 1 + C T BLCA 13645293 + 13645273 13645313 41 CCACCTCCTTACCAGGGGCCCTGCACCCTGCAGCTCCGGGA CCACCTTCTTACCAGGGGCCCTGCACCCTGCAGCTCCGGGA < 41bp 1 0.488007743999517 1 0.0991477966308594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLRAD4 ENSG00000168675 CDS Human protein_coding chr18:13645293 chr18:13645279 nonsynonymous SNV 0.994 4 7 hm5C_associated_SNPs_16110 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17688 DeepMRMD:1;iRNA_m5C:0.999536712157815 17689 chr12 132547120 132547120 1 + G A BLCA 132547130 + 132547110 132547150 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG AGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAGCAG < 41bp 1 0.497817045060675 1 0.495095312595367 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132547130 chr12:132547120 synonymous SNV . 0 11 hm5C_associated_SNPs_16111 0 0 0 0 0 Cytosol 1 0.500231937918245 1 0.99953612416351 hm5C_site_17689 DeepMRMD:1;iRNA_m5C:0.99953612416351 17690 chr20 279103 279103 1 + G T BLCA 279121 + 279101 279141 41 GGGATCTGGACCGGGGAGTACAAATGCGAGATCGAGCTGCG GGTATCTGGACCGGGGAGTACAAATGCGAGATCGAGCTGCG < 41bp 1 0.591229843500593 1 0.525008916854858 experiment 0.817540312998813 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZCCHC3 ENSG00000177764 CDS Human other chr20:279121 chr20:279103 synonymous SNV . 0 3 hm5C_associated_SNPs_16112 0 0 1 0 0 Cytosol 1 0.500231644737003 0.949982166290284 0.999536710525994 hm5C_site_17690 DeepMRMD:0.949982166290284;iRNA_m5C:0.999536710525994 17691 chr11 61404392 61404392 1 + C T BLCA 61404394 + 61404374 61404414 41 CTGGAGAAACTGCTGCCTCGCATCTGGGAGAATGTGGGCTT CTGGAGAAACTGCTGCCTTGCATCTGGGAGAATGTGGGCTT < 41bp 1 0.300905036357649 1 0.193625539541245 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404394 chr11:61404392 . . 0 19 hm5C_associated_SNPs_16113 0 0 0 0 0 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_17691 DeepMRMD:1;iRNA_m5C:0.999536712157812 17692 chr12 132547111 132547111 1 + G A BLCA 132547130 + 132547110 132547150 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG AACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG < 41bp 1 0.503968236299319 1 0.661095082759857 experiment 0.992063527401362 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132547130 chr12:132547111 synonymous SNV . 0 2 hm5C_associated_SNPs_16114 0 0 0 0 0 Cytosol 1 0.500236625889527 0.677809834480286 0.999526748220947 hm5C_site_17692 DeepMRMD:0.677809834480286;iRNA_m5C:0.999526748220947 17693 chr15 99459919 99459919 1 + A C BLCA 99459934 + 99459914 99459954 41 CAGGAAGTATGCCGACGGCACCATCGACATTGAGGAGGTCA CAGGACGTATGCCGACGGCACCATCGACATTGAGGAGGTCA < 41bp 1 0.00960147416879578 1 0.0546481907367706 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99459934 chr15:99459919 nonsynonymous SNV 0.989 1 6 hm5C_associated_SNPs_16115 0 0 1 0 1 Endoplasmic reticulum 1 0.500231637137433 1 0.999536725725133 hm5C_site_17693 DeepMRMD:1;iRNA_m5C:0.999536725725133 17694 chr12 132547117 132547117 1 + G A BLCA 132547130 + 132547110 132547150 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG AGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG < 41bp 1 0.496241196415449 1 0.551873505115509 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132547130 chr12:132547117 synonymous SNV . 0 8 hm5C_associated_SNPs_16116 0 0 0 0 0 Cytosol 1 0.500231645805276 0.896252989768982 0.999536708389447 hm5C_site_17694 DeepMRMD:0.896252989768982;iRNA_m5C:0.999536708389447 17695 chr11 46895138 46895138 1 + T C BLCA 46895143 - 46895123 46895163 41 ACACTGGGCTCTCCCCAAGGCGAGCAGACCTGAACGGCAGC ACACTGGGCTCTCCCCAAGGCGAGCGGACCTGAACGGCAGC < 41bp 1 0.256899559928907 1 0.668308734893799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP4 ENSG00000134569 CDS Human protein_coding chr11:46895143 chr11:46895138 synonymous SNV . 0 26 hm5C_associated_SNPs_16117 0 0 1 0 1 cytosol 1 0.500231643921092 0.663382530212402 0.999536712157815 hm5C_site_17695 DeepMRMD:0.663382530212402;iRNA_m5C:0.999536712157815 17696 chr5 110097170 110097170 1 + A T BLCA 110097160 + 110097140 110097180 41 TGTGCAGAGTATGTTGGATGCTTATTTTCCAGAACTTATTG TGTGCAGAGTATGTTGGATGCTTATTTTCCTGAACTTATTG < 41bp 1 0.251738903103125 1 0.0464199483394623 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC25A46 ENSG00000164209 CDS Human protein_coding chr5:110097160 chr5:110097170 synonymous SNV . 0 31 hm5C_associated_SNPs_16119 0 0 1 0 0 Cytosol 1 0.500231645788646 1 0.999536708422708 hm5C_site_17696 DeepMRMD:1;iRNA_m5C:0.999536708422708 17697 chr7 91981884 91981884 1 + G T BLCA 91981887 + 91981867 91981907 41 AGGGTCAAATACATCTGGATCTGATACACTCAGCTTCCCAT AGGGTCAAATACATCTGTATCTGATACACTCAGCTTCCCAT < 41bp 1 0.367405534334521 1 0.0640631020069122 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:91981887 chr7:91981884 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_16120 0 0 1 0 2 Cytosol 1 0.50023163219389 1 0.99953673561222 hm5C_site_17697 DeepMRMD:1;iRNA_m5C:0.99953673561222 17698 chr16 90028237 90028237 1 + C T BLCA 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACGACCTGGCTGTGATCCCTGCATGCGTTGTACACAA < 41bp 1 0.405692750381517 1 0.17419508099556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028237 nonsynonymous SNV 0.106 4 28 hm5C_associated_SNPs_16123 0 0 1 0 2 Ribosome 1 0.500231608190119 1 0.999536783619763 hm5C_site_17698 DeepMRMD:1;iRNA_m5C:0.999536783619763 17699 chr16 90028237 90028237 1 + C T BLCA 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACGACCTGGCTGTGATCCCTGCATGCGTTGTACACAAC < 41bp 1 0.143207807037368 1 0.208404570817947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028237 nonsynonymous SNV 0.106 4 27 hm5C_associated_SNPs_16124 0 0 1 0 2 Ribosome 1 0.500231568429768 1 0.999536863140464 hm5C_site_17699 DeepMRMD:1;iRNA_m5C:0.999536863140464 17700 chr4 123260523 123260523 1 + G C BLCA 123260543 + 123260523 123260563 41 GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAG CAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAG < 41bp 1 0.112176000887359 1 0.357998549938202 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123260543 chr4:123260523 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_16125 0 0 1 0 1 Nucleus 1 0.50023164383588 1 0.999536712328241 hm5C_site_17700 DeepMRMD:1;iRNA_m5C:0.999536712328241 17701 chr16 31131792 31131792 1 + G A BLCA 31131787 + 31131767 31131807 41 GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCGCAA GAGCAGCCTGAGCGCAAGATCACTCACAACCAAAAGCGCAA < 41bp 1 0.220509585604551 1 0.0524667799472809 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131787 chr16:31131792 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_16126 0 0 1 0 1 Ribosome 1 0.500231643920812 1 0.999536712158376 hm5C_site_17701 DeepMRMD:1;iRNA_m5C:0.999536712158376 17702 chr11 46397494 46397494 1 + G T BLCA 46397500 + 46397480 46397520 41 AAGGAGCAGCTCAAGGAGGCCTGTGAGTGCGGTGGGGCGGC AAGGAGCAGCTCAATGAGGCCTGTGAGTGCGGTGGGGCGGC < 41bp 1 0.280068369183867 1 0.196340352296829 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46397500 chr11:46397494 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_16128 0 0 1 0 2 Ribosome 1 0.500231643733888 1 0.999536712532223 hm5C_site_17702 DeepMRMD:1;iRNA_m5C:0.999536712532223 17703 chr22 23438386 23438386 1 + T C BLCA 23438366 + 23438346 23438386 41 ACTACCTGAACGACCTGGAGCGCATCGCCGCAGCTGACTAT ACTACCTGAACGACCTGGAGCGCATCGCCGCAGCTGACTAC < 41bp 1 0.238860630328761 1 0.0647713541984558 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438366 chr22:23438386 synonymous SNV . 0 41 hm5C_associated_SNPs_16129 0 0 1 0 0 Ribosome 1 0.500231643931201 1 0.999536712137598 hm5C_site_17703 DeepMRMD:1;iRNA_m5C:0.999536712137598 17704 chr9 140100321 140100321 1 + G T BLCA 140100319 + 140100299 140100339 41 CTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT CTGGGTCGCGAGGCCCGGCGCCTGCGGCTTGGCTGCCGGGT < 41bp 1 0.128618230667267 1 0.184174299240112 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100319 chr9:140100321 nonsynonymous SNV 0.947 1 23 hm5C_associated_SNPs_16130 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17704 DeepMRMD:1;iRNA_m5C:0.999536712157815 17705 chr9 140100321 140100321 1 + G T BLCA 140100320 + 140100300 140100340 41 TGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGTG TGGGTCGCGAGGCCCGGCGCCTGCGGCTTGGCTGCCGGGTG < 41bp 1 0.639151629839851 1 0.433261215686798 experiment 0.721696740320299 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100320 chr9:140100321 nonsynonymous SNV 0.947 1 22 hm5C_associated_SNPs_16131 0 0 0 0 1 chromatin 1 0.50023164342499 1 0.999536713150019 hm5C_site_17705 DeepMRMD:1;iRNA_m5C:0.999536713150019 17706 chr9 140100321 140100321 1 + G T BLCA 140100331 + 140100311 140100351 41 GCCCGGCGCCGGCGGCTTGGCTGCCGGGTGCAGGCCCTGGA GCCCGGCGCCTGCGGCTTGGCTGCCGGGTGCAGGCCCTGGA < 41bp 1 0.615752436108919 1 0.257623314857483 experiment 0.768495127782162 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100331 chr9:140100321 nonsynonymous SNV 0.947 1 11 hm5C_associated_SNPs_16132 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17706 DeepMRMD:1;iRNA_m5C:0.999536712157815 17707 chr9 133506081 133506081 1 + C T BLCA 133506078 + 133506058 133506098 41 CGTGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCA CGTGGAGCTTCAGAGGAACCCCCTTCCCAACAGCGACCCCA < 41bp 1 0.151981227461064 1 0.0907883942127228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506078 chr9:133506081 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_16133 0 0 1 0 2 Ribosome 1 0.500231607215237 1 0.999536785569526 hm5C_site_17707 DeepMRMD:1;iRNA_m5C:0.999536785569526 17708 chr9 133506081 133506081 1 + C T BLCA 133506080 + 133506060 133506100 41 TGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCAAC TGGAGCTTCAGAGGAACCCCCTTCCCAACAGCGACCCCAAC < 41bp 1 0.104386420986228 1 0.478390276432037 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506080 chr9:133506081 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_16134 0 0 1 0 2 Ribosome 1 0.500231593779559 1 0.999536812440883 hm5C_site_17708 DeepMRMD:1;iRNA_m5C:0.999536812440883 17709 chrX 102632754 102632754 1 + G T BLCA 102632743 + 102632723 102632763 41 GACCATCATGATGAATTTTGCCTTATGCCTTGACTCCTGCC GACCATCATGATGAATTTTGCCTTATGCCTTTACTCCTGCC < 41bp 1 0.154597364109763 1 0.0567388832569122 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632743 chrX:102632754 stoploss 0.976 0 32 hm5C_associated_SNPs_16135 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17709 DeepMRMD:1;iRNA_m5C:0.999536712157815 17710 chrX 102632754 102632754 1 + G T BLCA 102632744 + 102632724 102632764 41 ACCATCATGATGAATTTTGCCTTATGCCTTGACTCCTGCCA ACCATCATGATGAATTTTGCCTTATGCCTTTACTCCTGCCA < 41bp 1 0.212978094878137 1 0.0410113334655762 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632744 chrX:102632754 stoploss 0.976 0 31 hm5C_associated_SNPs_16136 0 0 1 0 0 Cytosol 1 0.500231646033955 1 0.999536707932089 hm5C_site_17710 DeepMRMD:1;iRNA_m5C:0.999536707932089 17711 chrX 102632754 102632754 1 + G T BLCA 102632750 + 102632730 102632770 41 ATGATGAATTTTGCCTTATGCCTTGACTCCTGCCATTTATC ATGATGAATTTTGCCTTATGCCTTTACTCCTGCCATTTATC < 41bp 1 0.0282623343917609 1 0.0157767236232758 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632750 chrX:102632754 stoploss 0.976 0 25 hm5C_associated_SNPs_16137 0 0 1 0 0 Cytosol 1 0.500231599028252 1 0.999536801943496 hm5C_site_17711 DeepMRMD:1;iRNA_m5C:0.999536801943496 17712 chrX 102632754 102632754 1 + G T BLCA 102632751 + 102632731 102632771 41 TGATGAATTTTGCCTTATGCCTTGACTCCTGCCATTTATCA TGATGAATTTTGCCTTATGCCTTTACTCCTGCCATTTATCA < 41bp 1 0.269658749048546 1 0.0449738800525665 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632751 chrX:102632754 stoploss 0.976 0 24 hm5C_associated_SNPs_16138 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17712 DeepMRMD:1;iRNA_m5C:0.999536712157815 17713 chrX 102632754 102632754 1 + G T BLCA 102632756 + 102632736 102632776 41 AATTTTGCCTTATGCCTTGACTCCTGCCATTTATCATGAGA AATTTTGCCTTATGCCTTTACTCCTGCCATTTATCATGAGA < 41bp 1 0.444071512162224 1 0.552429616451263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632756 chrX:102632754 stoploss 0.976 0 19 hm5C_associated_SNPs_16139 0 0 1 0 0 Cytosol 1 0.500231654163687 0.895140767097474 0.999536691672626 hm5C_site_17713 DeepMRMD:0.895140767097474;iRNA_m5C:0.999536691672626 17714 chrX 102632754 102632754 1 + G T BLCA 102632763 + 102632743 102632783 41 CCTTATGCCTTGACTCCTGCCATTTATCATGAGATTAATAC CCTTATGCCTTTACTCCTGCCATTTATCATGAGATTAATAC < 41bp 1 0.078655748626686 1 0.011786013841629 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632763 chrX:102632754 stoploss 0.976 0 12 hm5C_associated_SNPs_16140 0 0 1 0 0 Cytosol 1 0.500231643921105 1 0.99953671215779 hm5C_site_17714 DeepMRMD:1;iRNA_m5C:0.99953671215779 17715 chr10 63850916 63850916 1 + C T BLCA 63850899 + 63850879 63850919 41 TCAGCCTTGGTCCCTGGGGCCAGCAAACAGCCACTCACCTC TCAGCCTTGGTCCCTGGGGCCAGCAAACAGCCACTCATCTC < 41bp 1 0.648294441534874 1 0.137760758399963 experiment 0.703411116930253 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARID5B ENSG00000150347 CDS Human protein_coding chr10:63850899 chr10:63850916 nonsynonymous SNV 0.901 1 38 hm5C_associated_SNPs_16141 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17715 DeepMRMD:1;iRNA_m5C:0.999536712157815 17716 chr12 54675607 54675607 1 + C G BLCA 54675598 + 54675578 54675618 41 GGTAATGAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTG GGTAATGAGAGATCCAAACACCAAGCGCTGCAGGGGCTTTG < 41bp 1 0.346255891809729 1 0.397072494029999 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675598 chr12:54675607 nonsynonymous SNV 0.997 5 30 hm5C_associated_SNPs_16142 0 0 0 1 0 Cytosol 1 0.500231644187903 1 0.999536711624194 hm5C_site_17716 DeepMRMD:1;iRNA_m5C:0.999536711624194 17717 chr12 54675607 54675607 1 + C G BLCA 54675599 + 54675579 54675619 41 GTAATGAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTGG GTAATGAGAGATCCAAACACCAAGCGCTGCAGGGGCTTTGG < 41bp 1 0.553814927937841 1 0.445027828216553 experiment 0.892370144124317 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675599 chr12:54675607 nonsynonymous SNV 0.997 5 29 hm5C_associated_SNPs_16143 0 0 0 1 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_17717 DeepMRMD:1;iRNA_m5C:0.999536712157815 17718 chr10 95660964 95660964 1 + T C BLCA 95660981 + 95660961 95661001 41 CTGTATTAGGAGAGTGGAGTCTGCCTTACTGTGGGTTGGAC CTGCATTAGGAGAGTGGAGTCTGCCTTACTGTGGGTTGGAC < 41bp 1 0.528372859046336 1 0.1197529733181 experiment 0.943254281907328 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC35G1 ENSG00000176273 CDS Human protein_coding chr10:95660981 chr10:95660964 nonsynonymous SNV 0.017 0 4 hm5C_associated_SNPs_16144 0 0 1 0 0 exosome 1 0.500231643921107 1 0.999536712157787 hm5C_site_17718 DeepMRMD:1;iRNA_m5C:0.999536712157787 17719 chr11 64950985 64950985 1 + C G BLCA 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTGAA < 41bp 1 0.190908110586063 1 0.115455061197281 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950985 synonymous SNV . 0 39 hm5C_associated_SNPs_16145 0 0 0 0 2 Ribosome 1 0.500231643577343 1 0.999536712845315 hm5C_site_17719 DeepMRMD:1;iRNA_m5C:0.999536712845315 17720 chr11 65271270 65271270 1 + G T BLCA 65271255 + 65271235 65271275 41 TCAGGATTTGAGCGGAAGAACGAATGTAACTTTAAGGCAGG TCAGGATTTGAGCGGAAGAACGAATGTAACTTTAATGCAGG < 41bp 1 0.377843022357791 1 0.477019369602203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271255 chr11:65271270 . . 0 36 hm5C_associated_SNPs_16146 0 0 1 1 0 unknown 1 0.500231585842964 1 0.999536828314071 hm5C_site_17720 DeepMRMD:1;iRNA_m5C:0.999536828314071 17721 chr16 31131791 31131791 1 + C T BLCA 31131787 + 31131767 31131807 41 GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCGCAA GAGCAGCCTGAGCGCAAGATCACTTGCAACCAAAAGCGCAA < 41bp 1 0.353636189577647 1 0.0568622052669525 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131787 chr16:31131791 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_16147 0 0 1 0 1 Ribosome 1 0.50023164695429 1 0.99953670609142 hm5C_site_17721 DeepMRMD:1;iRNA_m5C:0.99953670609142 17722 chrX 47030517 47030517 1 + C A BLCA 47030525 + 47030505 47030545 41 CCAGGCTTCCCCCGAGACGGCGACTATCGGGACCAGGACTA CCAGGCTTCCCCAGAGACGGCGACTATCGGGACCAGGACTA < 41bp 1 0.49622556081034 1 0.123127549886703 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030525 chrX:47030517 synonymous SNV . 0 13 hm5C_associated_SNPs_16148 0 0 0 0 2 Ribosome 1 0.500231653032008 1 0.999536693935983 hm5C_site_17722 DeepMRMD:1;iRNA_m5C:0.999536693935983 17723 chr4 53579432 53579432 1 + G C BLCA 53579420 + 53579400 53579440 41 CAAAGCACCCTTTCCTGTGCCCTTTTAAGGTTGACCCAGTG CAAAGCACCCTTTCCTGTGCCCTTTTAAGGTTCACCCAGTG < 41bp 1 0.0111606782518584 1 0.0636335909366608 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579420 chr4:53579432 . . 0 33 hm5C_associated_SNPs_16149 0 0 1 0 0 unknown 1 0.500231643920621 1 0.999536712158759 hm5C_site_17723 DeepMRMD:1;iRNA_m5C:0.999536712158759 17724 chr4 53579432 53579432 1 + G C BLCA 53579434 + 53579414 53579454 41 CTGTGCCCTTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAA CTGTGCCCTTTTAAGGTTCACCCAGTGCTTTAAGAGGCTAA < 41bp 1 0.109756899441979 1 0.217121511697769 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579434 chr4:53579432 . . 0 19 hm5C_associated_SNPs_16150 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17724 DeepMRMD:1;iRNA_m5C:0.999536712157815 17725 chr4 53579432 53579432 1 + G C BLCA 53579435 + 53579415 53579455 41 TGTGCCCTTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAAC TGTGCCCTTTTAAGGTTCACCCAGTGCTTTAAGAGGCTAAC < 41bp 1 0.12405083306457 1 0.322538703680038 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579435 chr4:53579432 . . 0 18 hm5C_associated_SNPs_16151 0 0 1 0 0 unknown 1 0.500231644432601 1 0.999536711134798 hm5C_site_17725 DeepMRMD:1;iRNA_m5C:0.999536711134798 17726 chr4 53579432 53579432 1 + G C BLCA 53579436 + 53579416 53579456 41 GTGCCCTTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAACA GTGCCCTTTTAAGGTTCACCCAGTGCTTTAAGAGGCTAACA < 41bp 1 0.273262266263794 1 0.753786087036133 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579436 chr4:53579432 . . 0 17 hm5C_associated_SNPs_16152 0 0 1 0 0 unknown 1 0.500231643921092 0.492427825927734 0.999536712157815 hm5C_site_17726 DeepMRMD:0.492427825927734;iRNA_m5C:0.999536712157815 17727 chr4 53579432 53579432 1 + G C BLCA 53579441 + 53579421 53579461 41 CTTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAACACAGAA CTTTTAAGGTTCACCCAGTGCTTTAAGAGGCTAACACAGAA < 41bp 1 0.213847551076513 1 0.193445473909378 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579441 chr4:53579432 . . 0 12 hm5C_associated_SNPs_16153 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_17727 DeepMRMD:1;iRNA_m5C:0.999536712157816 17728 chr4 53579432 53579432 1 + G C BLCA 53579451 + 53579431 53579471 41 TGACCCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTA TCACCCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTA < 41bp 1 0.14628934725872 1 0.154235243797302 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579451 chr4:53579432 . . 0 2 hm5C_associated_SNPs_16154 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_17728 DeepMRMD:1;iRNA_m5C:0.999536712157816 17729 chr1 145507691 145507691 1 + G A BLCA 145507671 + 145507651 145507691 41 CTCGATCGAAGGCGAGATGGCGGACGTGCTAGATCTTCACG CTCGATCGAAGGCGAGATGGCGGACGTGCTAGATCTTCACA < 41bp 1 0.256189682008507 1 0.236435443162918 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RBM8A ENSG00000131795 CDS Human other chr1:145507671 chr1:145507691 nonsynonymous SNV . 0 41 hm5C_associated_SNPs_16155 0 0 1 0 1 Ribosome 1 0.500231643921317 1 0.999536712157367 hm5C_site_17729 DeepMRMD:1;iRNA_m5C:0.999536712157367 17730 chr11 34129870 34129870 1 + G T BLCA 34129866 + 34129846 34129886 41 TCTTTGTTGTAGTTGGGGATCGAGGAAAAGATCAGGTATGG TCTTTGTTGTAGTTGGGGATCGAGTAAAAGATCAGGTATGG < 41bp 1 0.443488398200033 1 0.659066081047058 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129866 chr11:34129870 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_16156 0 0 1 0 1 chromatin 1 0.500231643921092 0.681867837905884 0.999536712157815 hm5C_site_17730 DeepMRMD:0.681867837905884;iRNA_m5C:0.999536712157815 17731 chr7 2613111 2613111 1 + G T BLCA 2613101 + 2613081 2613121 41 GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAA GAAAAAGAAGATATGTATGACGAGATTATTTAGTTAAAGAA < 41bp 1 0.451485693487053 1 0.636902093887329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IQCE ENSG00000106012 CDS Human protein_coding chr7:2613101 chr7:2613111 stopgain 0.998 1 31 hm5C_associated_SNPs_16157 0 0 1 0 2 chromatin 1 0.500231643921448 0.726195812225342 0.999536712157105 hm5C_site_17731 DeepMRMD:0.726195812225342;iRNA_m5C:0.999536712157105 17732 chr10 71146172 71146172 1 + G C BLCA 71146158 + 71146138 71146178 41 AGTCACCTTACTAAGGGATGCGATAAAAAGGAGAGAGGTAA AGTCACCTTACTAAGGGATGCGATAAAAAGGAGACAGGTAA < 41bp 1 0.195353366986867 1 0.337099730968475 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71146158 chr10:71146172 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_16158 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_17732 DeepMRMD:1;iRNA_m5C:0.999536712157815 17733 chr11 61404654 61404654 1 + G A BLCA 61404674 + 61404654 61404694 41 GAGCCAGTGAAGCCACGCTGCTGACCATGCTCAACATCTCC AAGCCAGTGAAGCCACGCTGCTGACCATGCTCAACATCTCC < 41bp 1 0.194280256071219 1 0.15524286031723 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404674 chr11:61404654 . . 0 1 hm5C_associated_SNPs_16159 0 0 0 0 0 unknown 1 0.500564010867646 1 0.998871978264708 hm5C_site_17733 DeepMRMD:1;iRNA_m5C:0.998871978264708 17734 chr16 57786699 57786699 1 + C G BLCA 57786697 + 57786677 57786717 41 TCGCCTGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGC TCGCCTGGCCCAGGAGCGTCCTGTTCAACCCAGACGGCTGC < 41bp 1 0.233615728639913 1 0.129481583833694 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786697 chr16:57786699 synonymous SNV . 0 23 hm5C_associated_SNPs_16160 0 0 0 0 1 Cytosol 1 0.500231643921264 1 0.999536712157472 hm5C_site_17734 DeepMRMD:1;iRNA_m5C:0.999536712157472 17735 chr16 57786699 57786699 1 + C G BLCA 57786702 + 57786682 57786722 41 TGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGCTGCCT TGGCCCAGGAGCGTCCTGTTCAACCCAGACGGCTGCTGCCT < 41bp 1 0.412185237353172 1 0.155111819505692 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786702 chr16:57786699 synonymous SNV . 0 18 hm5C_associated_SNPs_16161 0 0 0 0 1 Cytosol 1 0.500231643915556 1 0.999536712168887 hm5C_site_17735 DeepMRMD:1;iRNA_m5C:0.999536712168887 17736 chr1 21900165 21900165 1 + C G BLCA 21900169 + 21900149 21900189 41 CCTCCTCAGGTCTCTTCGAGCCAGGGGACATGCAGTACGAG CCTCCTCAGGTCTCTTGGAGCCAGGGGACATGCAGTACGAG < 41bp 1 0.40256589586372 1 0.844979882240295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALPL ENSG00000162551 CDS Human protein_coding chr1:21900169 chr1:21900165 nonsynonymous SNV 0.976 5 17 hm5C_associated_SNPs_16162 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.31004023551941 0.999536712157816 hm5C_site_17736 DeepMRMD:0.31004023551941;iRNA_m5C:0.999536712157816 17737 chr16 70562835 70562835 1 + G T BLCA 70562823 + 70562803 70562843 41 CCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC CCCGTGGGAAGATCTTGGAGCTGCTTCGCCCATACCCCAAC < 41bp 1 0.315995014379113 1 0.105692833662033 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70562823 chr16:70562835 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_16164 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_17737 DeepMRMD:1;iRNA_m5C:0.999536712157815 17738 chr19 36640691 36640691 1 + C T BLCA 36640710 + 36640690 36640730 41 TCACTCTCCACCCTCCTCTCCCCAGTGGCTGCAGCTGACTA TTACTCTCCACCCTCCTCTCCCCAGTGGCTGCAGCTGACTA < 41bp 1 0.204110756391372 1 0.220040678977966 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36640710 chr19:36640691 synonymous SNV . 0 2 hm5C_associated_SNPs_16165 0 0 1 0 0 Ribosome 1 0.500231643921116 1 0.999536712157768 hm5C_site_17738 DeepMRMD:1;iRNA_m5C:0.999536712157768 17739 chr19 36640691 36640691 1 + C T BLCA 36640711 + 36640691 36640731 41 CACTCTCCACCCTCCTCTCCCCAGTGGCTGCAGCTGACTAT TACTCTCCACCCTCCTCTCCCCAGTGGCTGCAGCTGACTAT < 41bp 1 0.379186053776925 1 0.176939874887466 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36640711 chr19:36640691 synonymous SNV . 0 1 hm5C_associated_SNPs_16166 0 0 1 0 0 Ribosome 1 0.500231643910018 1 0.999536712179963 hm5C_site_17739 DeepMRMD:1;iRNA_m5C:0.999536712179963 17740 chr11 48134415 48134415 1 + C G BLCA 48134404 + 48134384 48134424 41 CTTTCATAAACAGAATGGAACTGGAACACCTCAGGTGGAAA CTTTCATAAACAGAATGGAACTGGAACACCTGAGGTGGAAA < 41bp 1 0.559458068785244 1 0.464950799942017 experiment 0.881083862429512 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48134404 chr11:48134415 nonsynonymous SNV 0.001 0 32 hm5C_associated_SNPs_16167 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643952881 1 0.999536712094237 hm5C_site_17740 DeepMRMD:1;iRNA_m5C:0.999536712094237 17741 chr6 47576971 47576971 1 + C G BLCA 47576982 + 47576962 47577002 41 AAAAAAATTCCCTGGATGAACTTAGAGCCCAGATTATTGAA AAAAAAATTGCCTGGATGAACTTAGAGCCCAGATTATTGAA < 41bp 1 0.254212650729324 1 0.0883462429046631 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47576982 chr6:47576971 nonsynonymous SNV 0.966 1 10 hm5C_associated_SNPs_16168 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17741 DeepMRMD:1;iRNA_m5C:0.999536712157815 17742 chr6 7581110 7581110 1 + C G BLCA 7581095 + 7581075 7581115 41 TGAAGGACCAGGATATCACGCGGTTCCAGAACTCTCTGAAA TGAAGGACCAGGATATCACGCGGTTCCAGAACTCTGTGAAA < 41bp 1 0.154303487312398 1 0.380129337310791 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581095 chr6:7581110 nonsynonymous SNV 0.936 0 36 hm5C_associated_SNPs_16169 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_17742 DeepMRMD:1;iRNA_m5C:0.999536712157815 17743 chr6 7581110 7581110 1 + C G BLCA 7581100 + 7581080 7581120 41 GACCAGGATATCACGCGGTTCCAGAACTCTCTGAAAGAGCT GACCAGGATATCACGCGGTTCCAGAACTCTGTGAAAGAGCT < 41bp 1 0.213077971838659 1 0.239558428525925 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581100 chr6:7581110 nonsynonymous SNV 0.936 0 31 hm5C_associated_SNPs_16170 0 0 1 0 0 Nucleus 1 0.500231643922548 1 0.999536712154904 hm5C_site_17743 DeepMRMD:1;iRNA_m5C:0.999536712154904 17744 chr22 31266642 31266642 1 + C T BLCA 31266632 + 31266612 31266652 41 GAAGGTGGTGAATGAGCGGGCCACCCTCTTCCGCATCACAT GAAGGTGGTGAATGAGCGGGCCACCCTCTTTCGCATCACAT < 41bp 1 0.036163472034769 1 0.0935497283935547 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31266632 chr22:31266642 synonymous SNV . 0 31 hm5C_associated_SNPs_16173 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17744 DeepMRMD:1;iRNA_m5C:0.999536712157815 17745 chr3 52325046 52325046 1 + G A BLCA 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCGGACCGCAATGCGCTGCGGG < 41bp 1 0.559232745302123 1 0.771599769592285 experiment 0.881534509395755 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325046 nonsynonymous SNV 0.020 2 29 hm5C_associated_SNPs_16175 0 0 1 0 2 chromatin 1 0.500231644059897 0.45680046081543 0.999536711880206 hm5C_site_17745 DeepMRMD:0.45680046081543;iRNA_m5C:0.999536711880206 17746 chr11 118267074 118267074 1 + G C BLCA 118267077 + 118267057 118267097 41 CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA CCCCTCACCATGGACCACATCCGGCCAAACACAGAACTAAA < 41bp 1 0.227895985859107 1 0.382634222507477 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118267077 chr11:118267074 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_16176 0 0 1 0 1 Nucleus 1 0.500231643924233 1 0.999536712151534 hm5C_site_17746 DeepMRMD:1;iRNA_m5C:0.999536712151534 17747 chr22 38352817 38352817 1 + G A BLCA 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATAAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT < 41bp 1 0.533975321062728 1 0.16255784034729 experiment 0.932049357874545 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352817 nonsynonymous SNV 0.998 1 7 hm5C_associated_SNPs_16178 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17747 DeepMRMD:1;iRNA_m5C:0.999536712157815 17748 chr6 3850759 3850759 1 + C T BLCA 3850769 + 3850749 3850789 41 TCATGTTCATCAAGGAGGACCTCATCCTGCCGCACTACCAC TCATGTTCATTAAGGAGGACCTCATCCTGCCGCACTACCAC < 41bp 1 0.282547442411668 1 0.100889921188354 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM50B ENSG00000145945 CDS Human protein_coding chr6:3850769 chr6:3850759 synonymous SNV . 0 11 hm5C_associated_SNPs_16179 0 0 0 0 0 exosome 1 0.50023215604969 1 0.999535687900619 hm5C_site_17748 DeepMRMD:1;iRNA_m5C:0.999535687900619 17749 chr17 4905368 4905368 1 + C G BLCA 4905366 + 4905346 4905386 41 CCCTCCAGCTCTGTGAGGACCTCTTCTCTCGCGTTAGTGAG CCCTCCAGCTCTGTGAGGACCTGTTCTCTCGCGTTAGTGAG < 41bp 1 0.110617687435309 1 0.0479413866996765 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905366 chr17:4905368 synonymous SNV . 0 23 hm5C_associated_SNPs_16180 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_17749 DeepMRMD:1;iRNA_m5C:0.999536712157815 17750 chr6 155154524 155154524 1 + A G BLCA 155154525 + 155154505 155154545 41 AAGCACAGAAACTGAGGGGACATAATCATCACTCAGTAGGT AAGCACAGAAACTGAGGGGGCATAATCATCACTCAGTAGGT < 41bp 1 0.178220531230103 1 0.160979986190796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155154525 chr6:155154524 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_16181 0 0 1 0 1 Nucleus 1 0.500231643921106 1 0.999536712157789 hm5C_site_17750 DeepMRMD:1;iRNA_m5C:0.999536712157789 17751 chr4 107268795 107268795 1 + G A BLCA 107268786 + 107268766 107268806 41 GCTACATACAAAGGAGTTCCCTTTGAGGTGAAAGGGAAGGG GCTACATACAAAGGAGTTCCCTTTGAGGTAAAAGGGAAGGG < 41bp 1 0.271334094396881 1 0.152696460485458 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107268786 chr4:107268795 synonymous SNV . 0 30 hm5C_associated_SNPs_16182 0 0 1 0 0 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_17751 DeepMRMD:1;iRNA_m5C:0.999536712157808 17752 chr17 37360818 37360818 1 + C G BLCA 37360801 + 37360781 37360821 41 CCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCA CCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCAGGCA < 41bp 1 0.460592299838554 1 0.282685548067093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360801 chr17:37360818 nonsynonymous SNV 0.996 2 38 hm5C_associated_SNPs_16183 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17752 DeepMRMD:1;iRNA_m5C:0.999536712157815 17753 chr17 37360818 37360818 1 + C G BLCA 37360807 + 37360787 37360827 41 TGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCC TGAGGCCCGCAGGTCTAAGACCAAGGAAGCAGGCAAGCGCC < 41bp 1 0.550193005515926 1 0.44643759727478 experiment 0.899613988968148 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360807 chr17:37360818 nonsynonymous SNV 0.996 2 32 hm5C_associated_SNPs_16184 0 0 1 0 1 chromatin 1 0.500231643921135 1 0.999536712157731 hm5C_site_17753 DeepMRMD:1;iRNA_m5C:0.999536712157731 17754 chr17 37360818 37360818 1 + C G BLCA 37360816 + 37360796 37360836 41 CAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGC CAGGTCTAAGACCAAGGAAGCAGGCAAGCGCCGTGAAGAGC < 41bp 1 0.503564287156152 1 0.691018462181091 experiment 0.992871425687697 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360816 chr17:37360818 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_16186 0 0 1 0 1 chromatin 1 0.500231643712799 0.617963075637818 0.999536712574402 hm5C_site_17754 DeepMRMD:0.617963075637818;iRNA_m5C:0.999536712574402 17755 chr17 37360818 37360818 1 + C G BLCA 37360820 + 37360800 37360840 41 TCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCT TCTAAGACCAAGGAAGCAGGCAAGCGCCGTGAAGAGCGCCT < 41bp 1 0.605153054242264 1 0.695806801319122 experiment 0.789693891515473 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360820 chr17:37360818 nonsynonymous SNV 0.996 2 19 hm5C_associated_SNPs_16187 0 0 1 0 1 chromatin 1 0.500231633127864 0.608386397361756 0.999536733744271 hm5C_site_17755 DeepMRMD:0.608386397361756;iRNA_m5C:0.999536733744271 17756 chr12 113730863 113730863 1 + G C BLCA 113730854 + 113730834 113730874 41 GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATA GTCACCAGGCTGCTGGAGACCCTCTCCCACATGGAGAGATA < 41bp 1 0.0971936389780022 1 0.0482022166252136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113730854 chr12:113730863 nonsynonymous SNV 0.998 0 30 hm5C_associated_SNPs_16189 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17756 DeepMRMD:1;iRNA_m5C:0.999536712157815 17757 chr5 159437854 159437854 1 + G A BLCA 159437849 + 159437829 159437869 41 AGAACTGGAAAAAAACATGTCGGATGAAGAGAAACAGGTAA AGAACTGGAAAAAAACATGTCGGATAAAGAGAAACAGGTAA < 41bp 1 0.421437457085392 1 0.442351311445236 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTC1 ENSG00000113312 CDS Human protein_coding chr5:159437849 chr5:159437854 nonsynonymous SNV 0.995 3 26 hm5C_associated_SNPs_16190 0 0 1 0 1 Ribosome 1 0.500231643722242 1 0.999536712555516 hm5C_site_17757 DeepMRMD:1;iRNA_m5C:0.999536712555516 17758 chr7 135272735 135272735 1 + C T BLCA 135272723 + 135272703 135272743 41 ATCTAGGGGTGGCTCATCAGCGGCCCCCTCAACGCCAGGTG ATCTAGGGGTGGCTCATCAGCGGCCCCCTCAATGCCAGGTG < 41bp 1 0.465903990115394 1 0.468891113996506 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135272723 chr7:135272735 nonsynonymous SNV 0.999 3 33 hm5C_associated_SNPs_16191 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17758 DeepMRMD:1;iRNA_m5C:0.999536712157815 17759 chrX 69699075 69699075 1 + G A BLCA 69699058 + 69699038 69699078 41 GAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGGGTC GAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGAGTC < 41bp 1 0.414356342725754 1 0.175692737102509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLG3 ENSG00000082458 CDS Human protein_coding chrX:69699058 chrX:69699075 nonsynonymous SNV 0.999 3 38 hm5C_associated_SNPs_16192 0 0 1 0 2 Ribosome 1 0.500231428384186 1 0.999537143231628 hm5C_site_17759 DeepMRMD:1;iRNA_m5C:0.999537143231628 17760 chr17 42636667 42636667 1 + C G BLCA 42636652 + 42636632 42636672 41 CTCATGACGCTCATCGTGGGCATCACGTCGGGCTTCTGGAT CTCATGACGCTCATCGTGGGCATCACGTCGGGCTTGTGGAT < 41bp 1 0.249026110700681 1 0.0627707839012146 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FZD2 ENSG00000180340 CDS Human protein_coding chr17:42636652 chr17:42636667 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16193 0 0 1 0 0 exosome 1 0.500232329586022 1 0.999535340827957 hm5C_site_17760 DeepMRMD:1;iRNA_m5C:0.999535340827957 17761 chr16 30941527 30941527 1 + C T BLCA 30941537 + 30941517 30941557 41 TCTTCCTCCTCGGACTCAGACTCCGACTCCGACTCTTCGGG TCTTCCTCCTTGGACTCAGACTCCGACTCCGACTCTTCGGG < 41bp 1 0.435596315457165 1 0.772851049900055 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30941537 chr16:30941527 nonsynonymous SNV 0.997 2 11 hm5C_associated_SNPs_16194 0 0 1 0 0 chromatin 1 0.500231643983501 0.45429790019989 0.999536712032998 hm5C_site_17761 DeepMRMD:0.45429790019989;iRNA_m5C:0.999536712032998 17762 chr7 114302141 114302141 1 + A T BLCA 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTTGCC < 41bp 1 0.197647455532781 1 0.19581264257431 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302141 nonsynonymous SNV 0.998 5 38 hm5C_associated_SNPs_16195 0 0 1 4 1 Cytosol 1 0.500232265944297 1 0.999535468111406 hm5C_site_17762 DeepMRMD:1;iRNA_m5C:0.999535468111406 17763 chr10 5789627 5789627 1 + C T BLCA 5789636 + 5789616 5789656 41 TTAAAGAGACACGACCATATCAGGCTGTGACTCCATGCATT TTAAAGAGACATGACCATATCAGGCTGTGACTCCATGCATT < 41bp 1 0.529682376523415 1 0.16985622048378 experiment 0.94063524695317 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM208B ENSG00000108021 CDS Human protein_coding chr10:5789636 chr10:5789627 stopgain 0.008 0 12 hm5C_associated_SNPs_16196 0 0 1 0 0 Nucleus 1 0.500231630614495 1 0.99953673877101 hm5C_site_17763 DeepMRMD:1;iRNA_m5C:0.99953673877101 17764 chr16 1818252 1818252 1 + C T BLCA 1818253 + 1818233 1818273 41 CCCGTCCCGGGGGCATCATCCACGTGTATGGCGATGACAGC CCCGTCCCGGGGGCATCATTCACGTGTATGGCGATGACAGC < 41bp 1 0.597430248714459 1 0.708102107048035 experiment 0.805139502571082 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1818253 chr16:1818252 synonymous SNV . 0 20 hm5C_associated_SNPs_16198 0 0 1 0 1 chromatin 1 0.50023040571714 0.58379578590393 0.999539188565721 hm5C_site_17764 DeepMRMD:0.58379578590393;iRNA_m5C:0.999539188565721 17765 chr19 36278139 36278139 1 + C T BLCA 36278132 + 36278112 36278152 41 TCCTGCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC TCCTGCGCCCTGGGGGTGCCCCACCCCTGCCCCCTAAGAAC < 41bp 1 0.163535438782623 1 0.348897755146027 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278132 chr19:36278139 nonsynonymous SNV 0.621 2 28 hm5C_associated_SNPs_16199 0 0 0 0 1 chromatin 1 0.500231643921391 1 0.999536712157219 hm5C_site_17765 DeepMRMD:1;iRNA_m5C:0.999536712157219 17766 chr5 65118647 65118647 1 + G A BLCA 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGAGGATCTCTGGACGGCATGGACATGC < 41bp 1 0.382076802882915 1 0.161321133375168 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118647 synonymous SNV . 0 16 hm5C_associated_SNPs_16200 0 0 1 0 1 Ribosome 1 0.500231279738666 1 0.999537440522668 hm5C_site_17766 DeepMRMD:1;iRNA_m5C:0.999537440522668 17767 chr1 984698 984698 1 + C T BLCA 984697 + 984677 984717 41 TGGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCAC TGGCACCGCCTGGAGCTGTCCTGGCACTGGCGCCGGGGCAC < 41bp 1 0.491297624190005 1 0.603120446205139 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984697 chr1:984698 nonsynonymous SNV 0.140 4 22 hm5C_associated_SNPs_16201 0 0 1 0 1 Endoplasmic reticulum 1 0.500260084842885 0.793759107589722 0.99947983031423 hm5C_site_17767 DeepMRMD:0.793759107589722;iRNA_m5C:0.99947983031423 17768 chr1 984698 984698 1 + C T BLCA 984701 + 984681 984721 41 ACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCACCCTC ACCGCCTGGAGCTGTCCTGGCACTGGCGCCGGGGCACCCTC < 41bp 1 0.342983562764325 1 0.558914303779602 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984701 chr1:984698 nonsynonymous SNV 0.140 4 18 hm5C_associated_SNPs_16202 0 0 1 0 1 Endoplasmic reticulum 1 0.50023171521759 0.882171392440796 0.999536569564821 hm5C_site_17768 DeepMRMD:0.882171392440796;iRNA_m5C:0.999536569564821 17769 chr1 984698 984698 1 + C T BLCA 984709 + 984689 984729 41 GAGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGA GAGCTGTCCTGGCACTGGCGCCGGGGCACCCTCTCGGTGGA < 41bp 1 0.409825114005496 1 0.754111766815186 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984709 chr1:984698 nonsynonymous SNV 0.140 4 10 hm5C_associated_SNPs_16203 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 0.491776466369628 0.999536712157815 hm5C_site_17769 DeepMRMD:0.491776466369628;iRNA_m5C:0.999536712157815 17770 chr1 984698 984698 1 + C T BLCA 984710 + 984690 984730 41 AGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGAT AGCTGTCCTGGCACTGGCGCCGGGGCACCCTCTCGGTGGAT < 41bp 1 0.532487674919422 1 0.840839505195618 experiment 0.935024650161157 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984710 chr1:984698 nonsynonymous SNV 0.140 4 9 hm5C_associated_SNPs_16204 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.318320989608764 0.999536712157815 hm5C_site_17770 DeepMRMD:0.318320989608764;iRNA_m5C:0.999536712157815 17771 chr7 40102457 40102457 1 + G A BLCA 40102465 + 40102445 40102485 41 TAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGA TAATTACTTTATAGTACCGTCCACCTGAACTGCTACTGGGA < 41bp 1 0.0315762389508573 1 0.102453708648682 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102465 chr7:40102457 stopgain 1.000 0 13 hm5C_associated_SNPs_16205 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17771 DeepMRMD:1;iRNA_m5C:0.999536712157815 17772 chr10 43292234 43292234 1 + A G BLCA 43292225 + 43292205 43292245 41 GACGATGACCTTGAGAGGAGCTCAGCGGAAGAAGGGGAAGC GACGATGACCTTGAGAGGAGCTCAGCGGAGGAAGGGGAAGC < 41bp 1 0.359574795477558 1 0.158228605985641 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292225 chr10:43292234 synonymous SNV . 0 30 hm5C_associated_SNPs_16206 0 0 1 0 0 chromatin 1 0.500231643921655 1 0.99953671215669 hm5C_site_17772 DeepMRMD:1;iRNA_m5C:0.99953671215669 17773 chr10 43292234 43292234 1 + A G BLCA 43292254 + 43292234 43292274 41 AGAAGGGGAAGCGGAGGAAGCTGATGAAAGCAGTGAAGAAG GGAAGGGGAAGCGGAGGAAGCTGATGAAAGCAGTGAAGAAG < 41bp 1 0.642923971555479 1 0.469664126634598 experiment 0.714152056889041 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292254 chr10:43292234 synonymous SNV . 0 1 hm5C_associated_SNPs_16208 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17773 DeepMRMD:1;iRNA_m5C:0.999536712157815 17774 chr15 41859598 41859598 1 + T C BLCA 41859602 + 41859582 41859622 41 GAAGTCCTGGCTGTTGTGGTCCCTGTGCCCCCCTTTACCTG GAAGTCCTGGCTGTTGCGGTCCCTGTGCCCCCCTTTACCTG < 41bp 1 0.211301653156452 1 0.0496354401111603 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41859602 chr15:41859598 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_16209 0 0 0 0 1 Ribosome 1 0.500231643921091 1 0.999536712157819 hm5C_site_17774 DeepMRMD:1;iRNA_m5C:0.999536712157819 17775 chr22 29445779 29445779 1 + C T BLCA 29445774 + 29445754 29445794 41 TTCAGCTGCTATCACGGCCACCGCTCGGTGTGCAGTGGCTA TTCAGCTGCTATCACGGCCACCGCTTGGTGTGCAGTGGCTA < 41bp 1 0.121542292052043 1 0.0817110240459442 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29445774 chr22:29445779 nonsynonymous SNV 0.900 4 26 hm5C_associated_SNPs_16210 0 0 0 0 0 Ribosome 1 0.50034094541959 1 0.999318109160821 hm5C_site_17775 DeepMRMD:1;iRNA_m5C:0.999318109160821 17776 chr6 109484117 109484117 1 + C T BLCA 109484132 + 109484112 109484152 41 CAATACGAGTTCATAATCTTCAAATGAAATTGAGAAGAGAT CAATATGAGTTCATAATCTTCAAATGAAATTGAGAAGAGAT < 41bp 1 0.255025262575134 1 0.446845591068268 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP57L1 ENSG00000183137 CDS Human protein_coding chr6:109484132 chr6:109484117 stopgain 0.782 0 6 hm5C_associated_SNPs_16211 0 0 1 0 0 chromatin 1 0.500231662251867 1 0.999536675496265 hm5C_site_17776 DeepMRMD:1;iRNA_m5C:0.999536675496265 17777 chr1 26800009 26800009 1 + G T BLCA 26800015 + 26799995 26800035 41 GATAAAGCAAAGGTGAAGGACGAAGTAAGTCATTCTCTCTT GATAAAGCAAAGGTTAAGGACGAAGTAAGTCATTCTCTCTT < 41bp 1 0.564039606370921 1 0.108158975839615 experiment 0.871920787258158 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26800015 chr1:26800009 synonymous SNV . 0 15 hm5C_associated_SNPs_16212 0 0 1 0 2 Cytosol 1 0.500231597365678 1 0.999536805268644 hm5C_site_17777 DeepMRMD:1;iRNA_m5C:0.999536805268644 17778 chr2 128178930 128178930 1 + G C BLCA 128178922 + 128178902 128178942 41 GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTCCGTC GATCCGCAAACGTGCCAACTCCTTCCTGCAGGAGCTCCGTC < 41bp 1 0.0557992961243031 1 0.0916672646999359 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128178922 chr2:128178930 nonsynonymous SNV 0.267 5 29 hm5C_associated_SNPs_16213 0 0 1 0 3 nucleus 1 0.500231643852338 1 0.999536712295324 hm5C_site_17778 DeepMRMD:1;iRNA_m5C:0.999536712295324 17779 chr3 9976246 9976246 1 + C T BLCA 9976249 + 9976229 9976269 41 AGTCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGC AGTCTTCTCCCCCGCCTTAGCCCCATCCGTGTCATACCTGC < 41bp 1 0.613098738815081 1 0.342501819133759 experiment 0.773802522369837 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976249 chr3:9976246 stopgain 0.265 0 18 hm5C_associated_SNPs_16214 0 0 1 0 1 chromatin 1 0.500231643921388 1 0.999536712157224 hm5C_site_17779 DeepMRMD:1;iRNA_m5C:0.999536712157224 17780 chr3 9976246 9976246 1 + C T BLCA 9976251 + 9976231 9976271 41 TCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCG TCTTCTCCCCCGCCTTAGCCCCATCCGTGTCATACCTGCCG < 41bp 1 0.0387420297598317 1 0.0398187935352325 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976251 chr3:9976246 stopgain 0.265 0 16 hm5C_associated_SNPs_16215 0 0 1 0 1 chromatin 1 0.500231644031091 1 0.999536711937819 hm5C_site_17780 DeepMRMD:1;iRNA_m5C:0.999536711937819 17781 chr3 9976246 9976246 1 + C T BLCA 9976252 + 9976232 9976272 41 CTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCGG CTTCTCCCCCGCCTTAGCCCCATCCGTGTCATACCTGCCGG < 41bp 1 0.191493595685269 1 0.25887656211853 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976252 chr3:9976246 stopgain 0.265 0 15 hm5C_associated_SNPs_16216 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17781 DeepMRMD:1;iRNA_m5C:0.999536712157815 17782 chr19 50335588 50335588 1 + G C BLCA 50335577 + 50335557 50335597 41 TCCCGCAGACCACCCTGGGCCCTTTGTTCCGGAACTCAAGG TCCCGCAGACCACCCTGGGCCCTTTGTTCCGCAACTCAAGG < 41bp 1 0.0143708883080858 1 0.0347674489021301 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50335577 chr19:50335588 synonymous SNV . 0 32 hm5C_associated_SNPs_16217 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_17782 DeepMRMD:1;iRNA_m5C:0.999536712157815 17783 chr11 33079495 33079495 1 + A G BLCA 33079509 + 33079489 33079529 41 GGTCATACTAGACTGAGAAACCAGATAACAGAAGTCTTGGA GGTCATGCTAGACTGAGAAACCAGATAACAGAAGTCTTGGA < 41bp 1 0.54574252699879 1 0.538648128509521 experiment 0.90851494600242 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33079509 chr11:33079495 nonsynonymous SNV 0.993 1 7 hm5C_associated_SNPs_16218 0 0 1 0 1 Ribosome 1 0.500232750228547 0.922703742980958 0.999534499542907 hm5C_site_17783 DeepMRMD:0.922703742980958;iRNA_m5C:0.999534499542907 17784 chr7 99627511 99627511 1 + C T BLCA 99627493 + 99627473 99627513 41 TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCC TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACTCC < 41bp 1 0.249700438629273 1 0.0784173905849457 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627493 chr7:99627511 nonsynonymous SNV 0.354 0 39 hm5C_associated_SNPs_16220 0 0 1 0 2 Cytosol 1 0.500231643921094 1 0.999536712157811 hm5C_site_17784 DeepMRMD:1;iRNA_m5C:0.999536712157811 17785 chr7 99627511 99627511 1 + C T BLCA 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACTCCCTCAT < 41bp 1 0.515057732847025 1 0.0711269676685333 experiment 0.969884534305949 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627511 nonsynonymous SNV 0.354 0 34 hm5C_associated_SNPs_16221 0 0 1 0 2 Cytosol 1 0.500231643919849 1 0.999536712160302 hm5C_site_17785 DeepMRMD:1;iRNA_m5C:0.999536712160302 17786 chr15 73007723 73007723 1 + C T BLCA 73007740 + 73007720 73007760 41 CCTCAAGCAGGTGGCCAGATCTTTGTGAGTATTGGCAACCT CCTTAAGCAGGTGGCCAGATCTTTGTGAGTATTGGCAACCT < 41bp 1 0.42114219247319 1 0.20898973941803 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BBS4 ENSG00000140463 CDS Human protein_coding chr15:73007740 chr15:73007723 synonymous SNV . 0 4 hm5C_associated_SNPs_16222 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17786 DeepMRMD:1;iRNA_m5C:0.999536712157815 17787 chr16 2011284 2011284 1 + G A BLCA 2011268 + 2011248 2011288 41 CATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG CATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAAAGGG < 41bp 1 0.591059601241769 1 0.290755212306976 experiment 0.817880797516462 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011268 chr16:2011284 synonymous SNV . 0 37 hm5C_associated_SNPs_16224 0 0 1 0 1 Ribosome 1 0.500232279685403 1 0.999535440629194 hm5C_site_17787 DeepMRMD:1;iRNA_m5C:0.999535440629194 17788 chr16 2011284 2011284 1 + G A BLCA 2011269 + 2011249 2011289 41 ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAAAGGGA < 41bp 1 0.589224759587444 1 0.404100596904755 experiment 0.821550480825113 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011269 chr16:2011284 synonymous SNV . 0 36 hm5C_associated_SNPs_16225 0 0 1 0 1 Ribosome 1 0.500231644989189 1 0.999536710021621 hm5C_site_17788 DeepMRMD:1;iRNA_m5C:0.999536710021621 17789 chr1 198231746 198231746 1 + C G BLCA 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCACGTGCTGATTGCATGAAAGAAATAG < 41bp 1 0.164089254744681 1 0.146408259868622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231746 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_16227 0 0 0 0 2 Nucleus 1 0.500230485626378 1 0.999539028747243 hm5C_site_17789 DeepMRMD:1;iRNA_m5C:0.999539028747243 17790 chr1 198231746 198231746 1 + C G BLCA 198231762 + 198231742 198231782 41 GCATCAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG GCATGAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG < 41bp 1 0.501391004035225 1 0.157153874635696 experiment 0.997217991929549 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231762 chr1:198231746 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_16228 0 0 0 0 2 Nucleus 1 0.50023164392102 1 0.999536712157959 hm5C_site_17790 DeepMRMD:1;iRNA_m5C:0.999536712157959 17791 chr1 207510111 207510111 1 + C G BLCA 207510119 + 207510099 207510139 41 AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCACAA AACTACAGAAGTGTCACCAACTTCTCAGAAAACCACCACAA < 41bp 1 0.365391173452412 1 0.805492043495178 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207510119 chr1:207510111 synonymous SNV . 0 13 hm5C_associated_SNPs_16229 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921111 0.389015913009644 0.999536712157779 hm5C_site_17791 DeepMRMD:0.389015913009644;iRNA_m5C:0.999536712157779 17792 chr12 14650708 14650708 1 + C G BLCA 14650689 + 14650669 14650709 41 TCTCTGCCTCAGAAGCCACACTTGAAGTTAGCACGCGTTCA TCTCTGCCTCAGAAGCCACACTTGAAGTTAGCACGCGTTGA < 41bp 1 0.687670751288639 1 0.34931293129921 experiment 0.624658497422721 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14650689 chr12:14650708 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_16230 0 0 1 0 0 Cytosol 1 0.500231643317616 1 0.999536713364767 hm5C_site_17792 DeepMRMD:1;iRNA_m5C:0.999536713364767 17793 chr1 45268966 45268966 1 + C G BLCA 45268980 + 45268960 45269000 41 CCCTATCAGCAGCTGCGTGACAGTCCCAGACCTGACACCCC CCCTATGAGCAGCTGCGTGACAGTCCCAGACCTGACACCCC < 41bp 1 0.228296752181604 1 0.393904715776443 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268980 chr1:45268966 nonsynonymous SNV 0.997 0 7 hm5C_associated_SNPs_16231 0 0 1 0 1 Cytosol 1 0.500232451150531 1 0.999535097698937 hm5C_site_17793 DeepMRMD:1;iRNA_m5C:0.999535097698937 17794 chr1 114483780 114483780 1 + C A BLCA 114483796 + 114483776 114483816 41 CTTTCAGCATAAGAATCACACCTGCCTTGTTTTTGAAATGT CTTTAAGCATAAGAATCACACCTGCCTTGTTTTTGAAATGT < 41bp 1 0.0309691434215604 1 0.105891048908234 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114483796 chr1:114483780 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_16232 0 0 1 0 0 Cytosol 1 0.500232685742108 1 0.999534628515784 hm5C_site_17794 DeepMRMD:1;iRNA_m5C:0.999534628515784 17795 chrX 153780345 153780345 1 + C T BLCA 153780337 + 153780317 153780357 41 GGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGC GGGAAGCCAGCCATGCTGCACCTGCCTTTAGAACAGGGCGC < 41bp 1 0.0801899539321176 1 0.11500072479248 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IKBKG ENSG00000073009 CDS Human other chrX:153780337 chrX:153780345 nonsynonymous SNV 0.590 2 29 hm5C_associated_SNPs_16233 0 0 1 0 1 chromatin 1 0.50023164401025 1 0.9995367119795 hm5C_site_17795 DeepMRMD:1;iRNA_m5C:0.9995367119795 17796 chr8 87560571 87560571 1 + C G BLCA 87560561 + 87560541 87560581 41 TTCACTGGCTCCAATGGTGACCCAAGGTCTCCAGACTCCCT TTCACTGGCTCCAATGGTGACCCAAGGTCTGCAGACTCCCT < 41bp 1 0.500439411706213 1 0.0773419439792633 experiment 0.999121176587574 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87560561 chr8:87560571 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_16234 0 0 1 0 2 Nucleus 1 0.500231643917019 1 0.999536712165962 hm5C_site_17796 DeepMRMD:1;iRNA_m5C:0.999536712165962 17797 chr2 217311861 217311861 1 + C T BLCA 217311863 + 217311843 217311883 41 TTTCATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGT TTTCATGCCTTTGGACTTTGCTACTGTGATGCCAAACGGGT < 41bp 1 0.427670297414705 1 0.0939412713050842 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311863 chr2:217311861 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_16235 0 0 0 2 1 chromatin 1 0.500231643758295 1 0.99953671248341 hm5C_site_17797 DeepMRMD:1;iRNA_m5C:0.99953671248341 17798 chr2 217311861 217311861 1 + C T BLCA 217311866 + 217311846 217311886 41 CATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGTATG CATGCCTTTGGACTTTGCTACTGTGATGCCAAACGGGTATG < 41bp 1 0.38740259944823 1 0.074720174074173 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311866 chr2:217311861 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_16236 0 0 0 2 1 chromatin 1 0.500231645066868 1 0.999536709866264 hm5C_site_17798 DeepMRMD:1;iRNA_m5C:0.999536709866264 17799 chr4 174242741 174242741 1 + G A BLCA 174242739 + 174242719 174242759 41 TGTGTTTTCCAGAACCTGCACAGATTTACTCATATTCCTTC TGTGTTTTCCAGAACCTGCACAAATTTACTCATATTCCTTC < 41bp 1 0.197980067982331 1 0.110338270664215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174242739 chr4:174242741 nonsynonymous SNV 0.900 0 23 hm5C_associated_SNPs_16237 0 0 1 0 1 chromatin 1 0.500231643922324 1 0.999536712155352 hm5C_site_17799 DeepMRMD:1;iRNA_m5C:0.999536712155352 17800 chr1 171763634 171763634 1 + C G BLCA 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAATCTTTTGTACAGAAGGTTAAAA < 41bp 1 0.2262897460902 1 0.133596867322922 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763634 nonsynonymous SNV 0.943 4 26 hm5C_associated_SNPs_16238 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_17800 DeepMRMD:1;iRNA_m5C:0.999536712157815 17801 chr14 61997287 61997287 1 + G A BLCA 61997276 + 61997256 61997296 41 TGATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA TGATGAGGTGGTCTACCCTACCTGGCTCCATAAAGATGCCA < 41bp 1 0.105811941008606 1 0.104601114988327 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997276 chr14:61997287 nonsynonymous SNV 0.987 0 32 hm5C_associated_SNPs_16239 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17801 DeepMRMD:1;iRNA_m5C:0.999536712157815 17802 chr8 146033168 146033168 1 + C T BLCA 146033186 + 146033166 146033206 41 TTCGCGTGCACAGAGTGCGGCAAGGCGTTCTGCCGCAGGTT TTTGCGTGCACAGAGTGCGGCAAGGCGTTCTGCCGCAGGTT < 41bp 1 0.435018275436042 1 0.315720677375793 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146033186 chr8:146033168 synonymous SNV . 0 3 hm5C_associated_SNPs_16240 0 0 0 0 0 chromatin 1 0.500231643921054 1 0.999536712157893 hm5C_site_17802 DeepMRMD:1;iRNA_m5C:0.999536712157893 17803 chr12 14650678 14650678 1 + C T BLCA 14650689 + 14650669 14650709 41 TCTCTGCCTCAGAAGCCACACTTGAAGTTAGCACGCGTTCA TCTCTGCCTTAGAAGCCACACTTGAAGTTAGCACGCGTTCA < 41bp 1 0.680448694664514 1 0.291010737419128 experiment 0.639102610670973 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14650689 chr12:14650678 stopgain 1.000 0 10 hm5C_associated_SNPs_16241 0 0 1 0 1 Cytosol 1 0.500231655913058 1 0.999536688173884 hm5C_site_17803 DeepMRMD:1;iRNA_m5C:0.999536688173884 17804 chr20 47895492 47895492 1 + G A BLCA 47895499 + 47895479 47895519 41 TGGTGTAAATGATGACTTCACTTTTTTCCCCATCAGATCGA TGGTGTAAATGATAACTTCACTTTTTTCCCCATCAGATCGA < 41bp 1 0.088741190941636 1 0.0862611532211304 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895499 chr20:47895492 . . 0 14 hm5C_associated_SNPs_16242 0 0 1 1 0 unknown 1 0.500231646986296 1 0.999536706027408 hm5C_site_17804 DeepMRMD:1;iRNA_m5C:0.999536706027408 17805 chr20 47895492 47895492 1 + G A BLCA 47895509 + 47895489 47895529 41 GATGACTTCACTTTTTTCCCCATCAGATCGACAATGCTGAC GATAACTTCACTTTTTTCCCCATCAGATCGACAATGCTGAC < 41bp 1 0.290187065410299 1 0.0501384437084198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895509 chr20:47895492 . . 0 4 hm5C_associated_SNPs_16243 0 0 1 1 0 unknown 1 0.500231649836523 1 0.999536700326954 hm5C_site_17805 DeepMRMD:1;iRNA_m5C:0.999536700326954 17806 chr20 49576168 49576168 1 + C A BLCA 49576184 + 49576164 49576204 41 AAATCGCTGCGGGTCTGGGCCCCTCTTACAGTGGCAGCTTG AAATAGCTGCGGGTCTGGGCCCCTCTTACAGTGGCAGCTTG < 41bp 1 0.153560397126664 1 0.168146133422852 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOCS3 ENSG00000124217 CDS Human protein_coding chr20:49576184 chr20:49576168 synonymous SNV . 0 5 hm5C_associated_SNPs_16244 0 0 1 0 0 Nucleus 1 0.500231643930447 1 0.999536712139106 hm5C_site_17806 DeepMRMD:1;iRNA_m5C:0.999536712139106 17807 chr7 100484518 100484518 1 + C A BLCA 100484519 + 100484499 100484539 41 GGGGAGCAGCGGGGGCGCTCCTCCTGAGGAGCCTCCTAAGG GGGGAGCAGCGGGGGCGCTACTCCTGAGGAGCCTCCTAAGG < 41bp 1 0.685219406390219 1 0.717107832431793 experiment 0.629561187219561 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100484519 chr7:100484518 nonsynonymous SNV 0.164 1 20 hm5C_associated_SNPs_16245 0 0 1 0 1 Nucleus 1 0.500231643921157 0.565784335136414 0.999536712157685 hm5C_site_17807 DeepMRMD:0.565784335136414;iRNA_m5C:0.999536712157685 17808 chr22 24718351 24718351 1 + C T BLCA 24718365 + 24718345 24718385 41 TCCGCTCTCTTCTAGATGAGCATCACATTTCTTATGTCATA TCCGCTTTCTTCTAGATGAGCATCACATTTCTTATGTCATA < 41bp 1 0.090401092096531 1 0.0583515465259552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPECC1L ENSG00000100014;ENSG00000258555 CDS Human other chr22:24718365 chr22:24718351 nonsynonymous SNV 0.970 3 7 hm5C_associated_SNPs_16246 0 0 1 0 0 Cytosol 1 0.500231148150987 1 0.999537703698026 hm5C_site_17808 DeepMRMD:1;iRNA_m5C:0.999537703698026 17809 chr9 91930099 91930099 1 + C T BLCA 91930100 + 91930080 91930120 41 AACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAGT AACAGGCATGTTATGTTACTCAGAGAACTTTCCAAACAAGT < 41bp 1 0.568644866828685 1 0.572099804878235 experiment 0.862710266342629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930100 chr9:91930099 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_16249 0 0 1 0 1 Ribosome 1 0.500231642027454 0.85580039024353 0.999536715945093 hm5C_site_17809 DeepMRMD:0.85580039024353;iRNA_m5C:0.999536715945093 17810 chr5 154244931 154244931 1 + C G BLCA 154244920 + 154244900 154244940 41 CTTCTGGAATCAATACTTGGCAGTTCAATTTCAAATTTAAC CTTCTGGAATCAATACTTGGCAGTTCAATTTGAAATTTAAC < 41bp 1 0.0523699983612321 1 0.0983541309833527 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154244920 chr5:154244931 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_16250 0 0 1 0 1 Ribosome 1 0.500231643921033 1 0.999536712157935 hm5C_site_17810 DeepMRMD:1;iRNA_m5C:0.999536712157935 17811 chr5 53814560 53814560 1 + G C BLCA 53814572 + 53814552 53814592 41 AGCTGTGCGTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAG AGCTGTGCCTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAG < 41bp 1 0.249217764585478 1 0.076383113861084 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814572 chr5:53814560 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_16251 0 0 0 0 0 chromatin 1 0.500231644250263 1 0.999536711499474 hm5C_site_17811 DeepMRMD:1;iRNA_m5C:0.999536711499474 17812 chr5 53814560 53814560 1 + G C BLCA 53814573 + 53814553 53814593 41 GCTGTGCGTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAGG GCTGTGCCTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAGG < 41bp 1 0.0660685247741784 1 0.147447049617767 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814573 chr5:53814560 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_16252 0 0 0 0 0 chromatin 1 0.500231643921107 1 0.999536712157786 hm5C_site_17812 DeepMRMD:1;iRNA_m5C:0.999536712157786 17813 chr5 53814560 53814560 1 + G C BLCA 53814580 + 53814560 53814600 41 GTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAGGAGAACCC CTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAGGAGAACCC < 41bp 1 0.433245020514538 1 0.370951294898987 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814580 chr5:53814560 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_16253 0 0 0 0 0 chromatin 1 0.500231643916346 1 0.999536712167307 hm5C_site_17813 DeepMRMD:1;iRNA_m5C:0.999536712167307 17814 chr16 69942718 69942718 1 + C G BLCA 69942737 + 69942717 69942757 41 CCAAGACCACCACCTGGGAGCGGCCCCTTCCTCCAGGGTAG CGAAGACCACCACCTGGGAGCGGCCCCTTCCTCCAGGGTAG < 41bp 1 0.179654514833308 1 0.267308682203293 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WWP2 ENSG00000198373 CDS Human protein_coding chr16:69942737 chr16:69942718 synonymous SNV . 0 2 hm5C_associated_SNPs_16254 0 0 1 0 1 Ribosome 1 0.500231643921084 1 0.999536712157831 hm5C_site_17814 DeepMRMD:1;iRNA_m5C:0.999536712157831 17815 chr14 53173924 53173924 1 + G C BLCA 53173926 + 53173906 53173946 41 CCGGCATCCCCTATGAGAGACGGCTTCTCATCATGGCGGAC CCGGCATCCCCTATGAGACACGGCTTCTCATCATGGCGGAC < 41bp 1 0.589374993719932 1 0.0992071032524109 experiment 0.821250012560135 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53173926 chr14:53173924 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_16255 0 0 1 0 0 Ribosome 1 0.500231643921004 1 0.999536712157992 hm5C_site_17815 DeepMRMD:1;iRNA_m5C:0.999536712157992 17816 chr3 17056240 17056240 1 + C A BLCA 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG GCCTCTCCTATGTGGCCAATCTCATGCAGTGCATGTTGGCG < 41bp 1 0.493673523972158 1 0.0978766679763794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056240 nonsynonymous SNV 0.984 2 10 hm5C_associated_SNPs_16256 0 0 1 0 1 nucleus 1 0.500231656336003 1 0.999536687327994 hm5C_site_17816 DeepMRMD:1;iRNA_m5C:0.999536687327994 17817 chr4 144390255 144390255 1 + G A BLCA 144390263 + 144390243 144390283 41 TGACCAACAGAAGACCTTGGCTCTAAAGAGTACCCGGGAAG TGACCAACAGAAAACCTTGGCTCTAAAGAGTACCCGGGAAG < 41bp 1 0.526561020507813 1 0.822988271713257 experiment 0.946877958984375 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144390263 chr4:144390255 synonymous SNV . 0 13 hm5C_associated_SNPs_16257 0 0 1 0 1 chromatin 1 0.500231643928861 0.354023456573486 0.999536712142277 hm5C_site_17817 DeepMRMD:0.354023456573486;iRNA_m5C:0.999536712142277 17818 chr22 42276798 42276798 1 + G A BLCA 42276812 + 42276792 42276832 41 CGCCTGGACCTGGCCTGCAGCCTCTCCTGGAACGTGATCCG CGCCTGAACCTGGCCTGCAGCCTCTCCTGGAACGTGATCCG < 41bp 1 0.0690193782416246 1 0.0483216941356659 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42276812 chr22:42276798 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_16258 0 0 1 0 1 Ribosome 1 0.500231643906038 1 0.999536712187923 hm5C_site_17818 DeepMRMD:1;iRNA_m5C:0.999536712187923 17819 chr6 31604138 31604138 1 + C G BLCA 31604122 + 31604102 31604142 41 AGTTGCCGGCTGGAGGAGTTCTCTACCCTCCACCTTCCTTC AGTTGCCGGCTGGAGGAGTTCTCTACCCTCCACCTTGCTTC < 41bp 1 0.695585697002797 1 0.804964900016785 experiment 0.608828605994405 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604122 chr6:31604138 nonsynonymous SNV 0.999 4 37 hm5C_associated_SNPs_16259 0 0 1 0 1 Ribosome 1 0.500231643921092 0.39007019996643 0.999536712157815 hm5C_site_17819 DeepMRMD:0.39007019996643;iRNA_m5C:0.999536712157815 17820 chr1 201981872 201981872 1 + G A BLCA 201981858 + 201981838 201981878 41 CTGTGGCGCAGGAGCCCCCTCCCCTGGCAGCTCTGACGTCT CTGTGGCGCAGGAGCCCCCTCCCCTGGCAGCTCTAACGTCT < 41bp 1 0.30877410341358 1 0.421292871236801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ELF3 ENSG00000163435 CDS Human protein_coding chr1:201981858 chr1:201981872 nonsynonymous SNV 0.065 0 35 hm5C_associated_SNPs_16261 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642984494 1 0.999536714031013 hm5C_site_17820 DeepMRMD:1;iRNA_m5C:0.999536714031013 17821 chr11 985535 985535 1 + G C BLCA 985545 + 985525 985565 41 CCAACGCGAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA CCAACGCGAACAATGCCGTGCTCTTCGAGGCCATCAGCTTA < 41bp 1 0.0512636403406544 1 0.0475075244903564 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985545 chr11:985535 nonsynonymous SNV 0.776 3 11 hm5C_associated_SNPs_16262 0 0 1 0 1 Nucleus 1 0.500231644742081 1 0.999536710515838 hm5C_site_17821 DeepMRMD:1;iRNA_m5C:0.999536710515838 17822 chr7 129950685 129950685 1 + G A BLCA 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCCGAAGTGTACCATGGACCCCACGCCAATTCAGAAGTG < 41bp 1 0.545096389356334 1 0.0697830319404602 experiment 0.909807221287332 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950685 synonymous SNV . 0 35 hm5C_associated_SNPs_16263 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921096 1 0.999536712157808 hm5C_site_17822 DeepMRMD:1;iRNA_m5C:0.999536712157808 17823 chr7 129950685 129950685 1 + G A BLCA 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCGAAGTGTACCATGGACCCCACGCCAATTCAGAAGTGG < 41bp 1 0.087070647076293 1 0.0602586269378662 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950685 synonymous SNV . 0 34 hm5C_associated_SNPs_16264 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392115 1 0.999536712157701 hm5C_site_17823 DeepMRMD:1;iRNA_m5C:0.999536712157701 17824 chr7 130021505 130021505 1 + C T BLCA 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCC < 41bp 1 0.110534078661629 1 0.216015696525574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021505 nonsynonymous SNV 0.248 0 37 hm5C_associated_SNPs_16265 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17824 DeepMRMD:1;iRNA_m5C:0.999536712157815 17825 chr7 130021505 130021505 1 + C T BLCA 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCA < 41bp 1 0.482250790215219 1 0.269678235054016 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021505 nonsynonymous SNV 0.248 0 36 hm5C_associated_SNPs_16266 0 0 0 0 2 Endoplasmic reticulum 1 0.500231636427687 1 0.999536727144626 hm5C_site_17825 DeepMRMD:1;iRNA_m5C:0.999536727144626 17826 chr7 130021505 130021505 1 + C T BLCA 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCG < 41bp 1 0.314858135377309 1 0.299221456050873 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021505 nonsynonymous SNV 0.248 0 33 hm5C_associated_SNPs_16267 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17826 DeepMRMD:1;iRNA_m5C:0.999536712157815 17827 chr7 130021505 130021505 1 + C T BLCA 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCGA < 41bp 1 0.360747383670432 1 0.0919402837753296 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021505 nonsynonymous SNV 0.248 0 32 hm5C_associated_SNPs_16268 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921854 1 0.999536712156292 hm5C_site_17827 DeepMRMD:1;iRNA_m5C:0.999536712156292 17828 chr7 130021505 130021505 1 + C T BLCA 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCGACGT < 41bp 1 0.524161581441015 1 0.0963522791862488 experiment 0.95167683711797 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021505 nonsynonymous SNV 0.248 0 29 hm5C_associated_SNPs_16270 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921056 1 0.999536712157888 hm5C_site_17828 DeepMRMD:1;iRNA_m5C:0.999536712157888 17829 chr7 130021505 130021505 1 + C T BLCA 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGGCCTGCCCACCCTGGCTTCCCCATCGACGTC < 41bp 1 0.629170483626827 1 0.158215224742889 experiment 0.741659032746347 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021505 nonsynonymous SNV 0.248 0 28 hm5C_associated_SNPs_16271 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643910547 1 0.999536712178905 hm5C_site_17829 DeepMRMD:1;iRNA_m5C:0.999536712178905 17830 chr7 130021505 130021505 1 + C T BLCA 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGT < 41bp 1 0.0768035688412535 1 0.0278977453708649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021505 nonsynonymous SNV 0.248 0 23 hm5C_associated_SNPs_16272 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157819 hm5C_site_17830 DeepMRMD:1;iRNA_m5C:0.999536712157819 17831 chr7 130021505 130021505 1 + C T BLCA 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGCC < 41bp 1 0.518049277853407 1 0.23035728931427 experiment 0.963901444293185 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021505 nonsynonymous SNV 0.248 0 20 hm5C_associated_SNPs_16273 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17831 DeepMRMD:1;iRNA_m5C:0.999536712157815 17832 chr7 130021505 130021505 1 + C T BLCA 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGCCC < 41bp 1 0.0974881689069382 1 0.162381440401077 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021505 nonsynonymous SNV 0.248 0 19 hm5C_associated_SNPs_16274 0 0 0 0 2 Endoplasmic reticulum 1 0.500231640292749 1 0.999536719414502 hm5C_site_17832 DeepMRMD:1;iRNA_m5C:0.999536719414502 17833 chr7 130021505 130021505 1 + C T BLCA 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGCCCT < 41bp 1 0.0769594405162324 1 0.284480929374695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021505 nonsynonymous SNV 0.248 0 18 hm5C_associated_SNPs_16275 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164391971 1 0.99953671216058 hm5C_site_17833 DeepMRMD:1;iRNA_m5C:0.99953671216058 17834 chr7 130021505 130021505 1 + C T BLCA 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTTCCCCATCGACGTCCGAGTGCCCTT < 41bp 1 0.465803040376214 1 0.220420658588409 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021505 nonsynonymous SNV 0.248 0 17 hm5C_associated_SNPs_16276 0 0 0 0 2 Endoplasmic reticulum 1 0.500176223681685 1 0.999647552636629 hm5C_site_17834 DeepMRMD:1;iRNA_m5C:0.999647552636629 17835 chr7 130021505 130021505 1 + C T BLCA 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTTCCCCATCGACGTCCGAGTGCCCTTCCCCAG < 41bp 1 0.418359895309126 1 0.382521688938141 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021505 nonsynonymous SNV 0.248 0 11 hm5C_associated_SNPs_16277 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17835 DeepMRMD:1;iRNA_m5C:0.999536712157815 17836 chr7 130021505 130021505 1 + C T BLCA 130021518 + 130021498 130021538 41 CCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT CCTGGCTTCCCCATCGACGTCCGAGTGCCCTTCCCCAGCAT < 41bp 1 0.514710445799772 1 0.623761236667633 experiment 0.970579108400456 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021518 chr7:130021505 nonsynonymous SNV 0.248 0 8 hm5C_associated_SNPs_16278 0 0 0 0 2 Endoplasmic reticulum 1 0.500231712340097 0.752477526664734 0.999536575319806 hm5C_site_17836 DeepMRMD:0.752477526664734;iRNA_m5C:0.999536575319806 17837 chr7 130021505 130021505 1 + C T BLCA 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTTCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC < 41bp 1 0.400303595234917 1 0.52924507856369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021505 nonsynonymous SNV 0.248 0 7 hm5C_associated_SNPs_16279 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920472 0.94150984287262 0.999536712159055 hm5C_site_17837 DeepMRMD:0.94150984287262;iRNA_m5C:0.999536712159055 17838 chr7 130021505 130021505 1 + C T BLCA 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG TCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0699091821466056 1 0.0203377604484558 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021505 nonsynonymous SNV 0.248 0 1 hm5C_associated_SNPs_16280 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17838 DeepMRMD:1;iRNA_m5C:0.999536712157815 17839 chr11 47600884 47600884 1 + G A BLCA 47600875 + 47600855 47600895 41 GAGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG GAGGCGGGAGAGCGCCGGGGCCGACACGCACCGTGAGTATG < 41bp 1 0.091210508323585 1 0.0581190288066864 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600875 chr11:47600884 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_16281 0 0 1 0 2 Ribosome 1 0.500231730222592 1 0.999536539554815 hm5C_site_17839 DeepMRMD:1;iRNA_m5C:0.999536539554815 17840 chr11 47600884 47600884 1 + G A BLCA 47600885 + 47600865 47600905 41 AGCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGC AGCGCCGGGGCCGACACGCACCGTGAGTATGTGCGGGCAGC < 41bp 1 0.267274586174639 1 0.0466585755348206 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600885 chr11:47600884 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_16283 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_17840 DeepMRMD:1;iRNA_m5C:0.999536712157815 17841 chr3 128998681 128998681 1 + G C BLCA 128998697 + 128998677 128998717 41 CCCTGATAAGTACTGCCCCTCTTACAACAAGAGTCCTCAAT CCCTCATAAGTACTGCCCCTCTTACAACAAGAGTCCTCAAT < 41bp 1 0.0659877791303753 1 0.0294438898563385 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMCES ENSG00000183624 CDS Human protein_coding chr3:128998697 chr3:128998681 nonsynonymous SNV 0.074 0 5 hm5C_associated_SNPs_16285 0 0 1 0 1 Ribosome 1 0.500231643921098 1 0.999536712157804 hm5C_site_17841 DeepMRMD:1;iRNA_m5C:0.999536712157804 17842 chr15 64792156 64792156 1 + G A BLCA 64792174 + 64792154 64792194 41 CAGAAAAGGATCCTGGGGTCCTCCAGCCAGTTCCCTTGGGA CAAAAAAGGATCCTGGGGTCCTCCAGCCAGTTCCCTTGGGA < 41bp 1 0.573486667811339 1 0.839556336402893 experiment 0.853026664377323 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ZNF609 ENSG00000180357 CDS Human protein_coding chr15:64792174 chr15:64792156 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_16286 0 0 1 0 0 Endoplasmic reticulum 1 0.500231642642167 0.320887327194214 0.999536714715667 hm5C_site_17842 DeepMRMD:0.320887327194214;iRNA_m5C:0.999536714715667 17843 chr2 178378611 178378611 1 + C T BLCA 178378621 + 178378601 178378641 41 GAAGGGTGTTCAGTTTGCTCCTTTTTCTACATGCAGGTAAG GAAGGGTGTTTAGTTTGCTCCTTTTTCTACATGCAGGTAAG < 41bp 1 0.0333487841563326 1 0.106463074684143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGPS ENSG00000018510 CDS Human protein_coding chr2:178378621 chr2:178378611 stopgain 0.998 1 11 hm5C_associated_SNPs_16287 0 0 1 0 1 Nucleus 1 0.50023128823962 1 0.999537423520759 hm5C_site_17843 DeepMRMD:1;iRNA_m5C:0.999537423520759 17844 chr19 17615416 17615416 1 + C G BLCA 17615397 + 17615377 17615417 41 GAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTCGCCCT GAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTCGCCGT < 41bp 1 0.319979607878105 1 0.125579565763474 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17615397 chr19:17615416 nonsynonymous SNV 0.070 4 40 hm5C_associated_SNPs_16288 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643924258 1 0.999536712151484 hm5C_site_17844 DeepMRMD:1;iRNA_m5C:0.999536712151484 17845 chrX 118109165 118109165 1 + C T BLCA 118109171 + 118109151 118109191 41 GGCGGCGGAAGAGACGGGGGCCGCCGCGGCTGCGGCGGCCA GGCGGCGGAAGAGATGGGGGCCGCCGCGGCTGCGGCGGCCA < 41bp 1 0.25858614375936 1 0.314680576324463 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109171 chrX:118109165 nonsynonymous SNV 0.008 0 15 hm5C_associated_SNPs_16289 0 0 0 0 0 chromatin 1 0.500231642919301 1 0.999536714161398 hm5C_site_17845 DeepMRMD:1;iRNA_m5C:0.999536714161398 17846 chrX 118109165 118109165 1 + C T BLCA 118109172 + 118109152 118109192 41 GCGGCGGAAGAGACGGGGGCCGCCGCGGCTGCGGCGGCCAC GCGGCGGAAGAGATGGGGGCCGCCGCGGCTGCGGCGGCCAC < 41bp 1 0.653022706982439 1 0.571926116943359 experiment 0.693954586035123 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109172 chrX:118109165 nonsynonymous SNV 0.008 0 14 hm5C_associated_SNPs_16290 0 0 0 0 0 chromatin 1 0.500231643921093 0.856147766113282 0.999536712157814 hm5C_site_17846 DeepMRMD:0.856147766113282;iRNA_m5C:0.999536712157814 17847 chr17 4926875 4926875 1 + C T BLCA 4926871 + 4926851 4926891 41 ACCGCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCA ACCGCATGCCGTCAGCCCGGCCCCTCTCGCCACCACTGTCA < 41bp 1 0.0992550920281561 1 0.019385039806366 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926871 chr17:4926875 nonsynonymous SNV 0.025 0 25 hm5C_associated_SNPs_16293 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_17847 DeepMRMD:1;iRNA_m5C:0.999536712157815 17848 chr17 4926875 4926875 1 + C T BLCA 4926874 + 4926854 4926894 41 GCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGC GCATGCCGTCAGCCCGGCCCCTCTCGCCACCACTGTCAAGC < 41bp 1 0.213226798717373 1 0.0321597754955292 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926874 chr17:4926875 nonsynonymous SNV 0.025 0 22 hm5C_associated_SNPs_16294 0 0 1 0 0 Ribosome 1 0.500231643927403 1 0.999536712145195 hm5C_site_17848 DeepMRMD:1;iRNA_m5C:0.999536712145195 17849 chr17 4926875 4926875 1 + C T BLCA 4926880 + 4926860 4926900 41 CGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAG CGTCAGCCCGGCCCCTCTCGCCACCACTGTCAAGCTGGGAG < 41bp 1 0.104149223096037 1 0.215936064720154 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926880 chr17:4926875 nonsynonymous SNV 0.025 0 16 hm5C_associated_SNPs_16295 0 0 1 0 0 Ribosome 1 0.500231643921221 1 0.999536712157558 hm5C_site_17849 DeepMRMD:1;iRNA_m5C:0.999536712157558 17850 chr17 4926875 4926875 1 + C T BLCA 4926883 + 4926863 4926903 41 CAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAGCGG CAGCCCGGCCCCTCTCGCCACCACTGTCAAGCTGGGAGCGG < 41bp 1 0.151938271406202 1 0.0503702759742737 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926883 chr17:4926875 nonsynonymous SNV 0.025 0 13 hm5C_associated_SNPs_16297 0 0 1 0 0 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_17850 DeepMRMD:1;iRNA_m5C:0.99953671215781 17851 chr8 48874100 48874100 1 + C G BLCA 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATGTCCCTCTCAGAGACGTAGAGGCGA < 41bp 1 0.153889895080416 1 0.0718506276607513 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874100 nonsynonymous SNV 0.012 1 17 hm5C_associated_SNPs_16299 0 0 1 1 1 Cytosol 1 0.500231643928881 1 0.999536712142239 hm5C_site_17851 DeepMRMD:1;iRNA_m5C:0.999536712142239 17852 chr11 45924599 45924599 1 + C T BLCA 45924592 + 45924572 45924612 41 CGTCTCCTCGCCCTATGAGTCGGCCATCGGAGAGGAATATG CGTCTCCTCGCCCTATGAGTCGGCCATTGGAGAGGAATATG < 41bp 1 0.296512427151997 1 0.354704439640045 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924592 chr11:45924599 synonymous SNV . 0 28 hm5C_associated_SNPs_16300 0 0 0 0 0 Endoplasmic reticulum 1 0.50023164392521 1 0.99953671214958 hm5C_site_17852 DeepMRMD:1;iRNA_m5C:0.99953671214958 17853 chr21 45546826 45546826 1 + C T BLCA 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACCTGAGATCAGGGTGACCTTACTCCGCTTCTCTCCCAC < 41bp 1 0.171478460951252 1 0.127068400382996 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546826 nonsynonymous SNV 0.442 1 23 hm5C_associated_SNPs_16301 0 0 1 0 2 Nucleus 1 0.500231643927779 1 0.999536712144442 hm5C_site_17853 DeepMRMD:1;iRNA_m5C:0.999536712144442 17854 chr17 28750667 28750667 1 + C T BLCA 28750676 + 28750656 28750696 41 ACACTAGAATTCACCTTATGCCATCCATGAATCCTGATGGG ACACTAGAATTTACCTTATGCCATCCATGAATCCTGATGGG < 41bp 1 0.0344255433704737 1 0.031213104724884 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28750676 chr17:28750667 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_16302 0 0 1 0 1 Nucleus 1 0.500175434737924 1 0.999649130524152 hm5C_site_17854 DeepMRMD:1;iRNA_m5C:0.999649130524152 17855 chr21 45546836 45546836 1 + C T BLCA 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACCTGAGATCAGGGTGACCTCACTCCGCTTTTCTCCCAC < 41bp 1 0.408840818754499 1 0.189801752567291 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546836 synonymous SNV . 0 33 hm5C_associated_SNPs_16303 0 0 1 0 2 Nucleus 1 0.50023164392123 1 0.999536712157541 hm5C_site_17855 DeepMRMD:1;iRNA_m5C:0.999536712157541 17856 chr15 40269014 40269014 1 + G A BLCA 40269028 + 40269008 40269048 41 GAGGACGAGCACGGTGGCGTCTTCTCCCAGTCCTTCCTGTA GAGGACAAGCACGGTGGCGTCTTCTCCCAGTCCTTCCTGTA < 41bp 1 0.26753158049167 1 0.0573285520076752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40269028 chr15:40269014 nonsynonymous SNV 0.666 0 7 hm5C_associated_SNPs_16304 0 0 1 0 1 Ribosome 1 0.500231643956686 1 0.999536712086629 hm5C_site_17856 DeepMRMD:1;iRNA_m5C:0.999536712086629 17857 chr9 100773666 100773666 1 + G A BLCA 100773650 + 100773630 100773670 41 GATGTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGA GATGTAGAAGGGGATGAGGACGACGATGAAGTCAGTAAGGA < 41bp 1 0.681979355526281 1 0.525973737239838 experiment 0.636041288947438 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773650 chr9:100773666 nonsynonymous SNV 0.969 1 37 hm5C_associated_SNPs_16305 0 0 1 0 1 Cytosol 1 0.500231643921113 0.948052525520324 0.999536712157775 hm5C_site_17857 DeepMRMD:0.948052525520324;iRNA_m5C:0.999536712157775 17858 chr9 100773666 100773666 1 + G A BLCA 100773653 + 100773633 100773673 41 GTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT GTAGAAGGGGATGAGGACGACGATGAAGTCAGTAAGGAGGT < 41bp 1 0.416325363924969 1 0.36298331618309 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773653 chr9:100773666 nonsynonymous SNV 0.969 1 34 hm5C_associated_SNPs_16306 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17858 DeepMRMD:1;iRNA_m5C:0.999536712157815 17859 chr12 124102401 124102401 1 + C A BLCA 124102395 + 124102375 124102415 41 CCCATGGAAGAGTCATACATCAATTTCCTTGCAATTAACCA CCCATGGAAGAGTCATACATCAATTTACTTGCAATTAACCA < 41bp 1 0.172905271574247 1 0.175170451402664 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX55 ENSG00000111364 CDS Human protein_coding chr12:124102395 chr12:124102401 nonsynonymous SNV 0.971 1 27 hm5C_associated_SNPs_16308 0 0 1 0 2 Nucleus 1 0.500231643403084 1 0.999536713193832 hm5C_site_17859 DeepMRMD:1;iRNA_m5C:0.999536713193832 17860 chr10 73122286 73122286 1 + G C BLCA 73122270 + 73122250 73122290 41 CTAAGATTGTGCCCAGGGAGCTGGCTGAGGCCACGGGAGTG CTAAGATTGTGCCCAGGGAGCTGGCTGAGGCCACGGCAGTG < 41bp 1 0.679782911059221 1 0.493979007005692 experiment 0.640434177881558 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73122270 chr10:73122286 nonsynonymous SNV 0.189 2 37 hm5C_associated_SNPs_16309 0 0 1 1 0 chromatin 1 0.500231643933347 1 0.999536712133307 hm5C_site_17860 DeepMRMD:1;iRNA_m5C:0.999536712133307 17861 chr10 118306870 118306870 1 + G T BLCA 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACTGAA < 41bp 1 0.245468183109279 1 0.16872975230217 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306870 synonymous SNV . 0 38 hm5C_associated_SNPs_16311 0 0 0 0 2 unknown 1 0.500231643286364 1 0.999536713427273 hm5C_site_17861 DeepMRMD:1;iRNA_m5C:0.999536713427273 17862 chr10 118306870 118306870 1 + G T BLCA 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACTGAAA < 41bp 1 0.525349111511167 1 0.723061561584473 experiment 0.949301776977667 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306870 synonymous SNV . 0 37 hm5C_associated_SNPs_16312 0 0 0 0 2 unknown 1 0.500231643921092 0.553876876831054 0.999536712157815 hm5C_site_17862 DeepMRMD:0.553876876831054;iRNA_m5C:0.999536712157815 17863 chr11 61106814 61106814 1 + G A BLCA 61106796 + 61106776 61106816 41 GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCAGT < 41bp 1 0.631320990224128 1 0.468068242073059 experiment 0.737358019551743 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106796 chr11:61106814 synonymous SNV . 0 39 hm5C_associated_SNPs_16313 0 0 1 0 2 Cytosol 1 0.500231643921489 1 0.999536712157022 hm5C_site_17863 DeepMRMD:1;iRNA_m5C:0.999536712157022 17864 chr8 33356007 33356007 1 + G A BLCA 33355999 + 33355979 33356019 41 TGAAGATCAGGATGGTAAATCCTCCAGTGAGGAGGAGGAAG TGAAGATCAGGATGGTAAATCCTCCAGTAAGGAGGAGGAAG < 41bp 1 0.130746067381847 1 0.118553042411804 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAK16 ENSG00000198042 CDS Human protein_coding chr8:33355999 chr8:33356007 nonsynonymous SNV 0.994 0 29 hm5C_associated_SNPs_16315 0 0 1 0 1 Cytosol 1 0.50023164391101 1 0.99953671217798 hm5C_site_17864 DeepMRMD:1;iRNA_m5C:0.99953671217798 17865 chr1 228479691 228479691 1 + C G BLCA 228479689 + 228479669 228479709 41 GTGTGAACTGAGCAAGGTGGCCCCTGTGGAGTGGAGGAAGG GTGTGAACTGAGCAAGGTGGCCGCTGTGGAGTGGAGGAAGG < 41bp 1 0.0530301873899263 1 0.386653870344162 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228479689 chr1:228479691 nonsynonymous SNV 0.017 3 23 hm5C_associated_SNPs_16316 0 0 1 0 1 Ribosome 1 0.500231643908842 1 0.999536712182316 hm5C_site_17865 DeepMRMD:1;iRNA_m5C:0.999536712182316 17866 chr19 45375390 45375390 1 + G A BLCA 45375373 + 45375353 45375393 41 AGCATGAGAGCTTCGAGGAACCAGCCCTGATACCTGTGACC AGCATGAGAGCTTCGAGGAACCAGCCCTGATACCTGTAACC < 41bp 1 0.0605672162335236 1 0.503134548664093 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45375373 chr19:45375390 synonymous SNV . 0 38 hm5C_associated_SNPs_16317 0 0 0 0 1 Ribosome 1 0.50023164392109 0.993730902671814 0.99953671215782 hm5C_site_17866 DeepMRMD:0.993730902671814;iRNA_m5C:0.99953671215782 17867 chr19 45375390 45375390 1 + G A BLCA 45375374 + 45375354 45375394 41 GCATGAGAGCTTCGAGGAACCAGCCCTGATACCTGTGACCC GCATGAGAGCTTCGAGGAACCAGCCCTGATACCTGTAACCC < 41bp 1 0.40939456274997 1 0.749575078487396 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45375374 chr19:45375390 synonymous SNV . 0 37 hm5C_associated_SNPs_16318 0 0 0 0 1 Ribosome 1 0.500231643809488 0.500849843025208 0.999536712381024 hm5C_site_17867 DeepMRMD:0.500849843025208;iRNA_m5C:0.999536712381024 17868 chr19 4475339 4475339 1 + C T BLCA 4475343 + 4475323 4475363 41 ATCTTTTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTC ATCTTTTTCTTTGGCATACACGAAACGTAAGTGTCCCCTTC < 41bp 1 0.595878384780628 1 0.277012974023819 experiment 0.808243230438745 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475343 chr19:4475339 nonsynonymous SNV 0.849 3 17 hm5C_associated_SNPs_16319 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17868 DeepMRMD:1;iRNA_m5C:0.999536712157815 17869 chr19 4475339 4475339 1 + C T BLCA 4475348 + 4475328 4475368 41 TTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTCTGGGG TTTCTTTGGCATACACGAAACGTAAGTGTCCCCTTCTGGGG < 41bp 1 0.400579411037548 1 0.100457578897476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475348 chr19:4475339 nonsynonymous SNV 0.849 3 12 hm5C_associated_SNPs_16320 0 0 1 0 2 unknown 1 0.500231295136082 1 0.999537409727835 hm5C_site_17869 DeepMRMD:1;iRNA_m5C:0.999537409727835 17870 chr19 57795979 57795979 1 + G A BLCA 57795986 + 57795966 57796006 41 GTGGGGGCAGTTGGACGTGACCCAGAGGGCCTTGTACGTGG GTGGGGGCAGTTGAACGTGACCCAGAGGGCCTTGTACGTGG < 41bp 1 0.628821021019773 1 0.0922248065471649 experiment 0.742357957960454 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57795986 chr19:57795979 nonsynonymous SNV 0.957 1 14 hm5C_associated_SNPs_16321 0 0 1 0 2 Nucleus 1 0.500231643920966 1 0.999536712158069 hm5C_site_17870 DeepMRMD:1;iRNA_m5C:0.999536712158069 17871 chr12 105519872 105519872 1 + C T BLCA 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGCACATAGTATTTGGTCAATTTTTGCAAATGTAGAAG < 41bp 1 0.197733010377739 1 0.0829561948776245 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519872 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_16323 0 0 1 0 2 unknown 1 0.500230148969122 1 0.999539702061755 hm5C_site_17871 DeepMRMD:1;iRNA_m5C:0.999539702061755 17872 chr12 105519872 105519872 1 + C T BLCA 105519885 + 105519865 105519905 41 TAGTATTCGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG TAGTATTTGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG < 41bp 1 0.368419035651079 1 0.263281285762787 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519885 chr12:105519872 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_16324 0 0 1 0 2 unknown 1 0.500231652669208 1 0.999536694661585 hm5C_site_17872 DeepMRMD:1;iRNA_m5C:0.999536694661585 17873 chrX 153696528 153696528 1 + C G BLCA 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCGTGCTCTTGCCGGGCATCGAGGCCCACCCG < 41bp 1 0.603683349157679 1 0.905939936637878 experiment 0.792633301684642 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696528 nonsynonymous SNV 0.988 4 20 hm5C_associated_SNPs_16325 0 0 0 0 1 Endoplasmic reticulum 1 0.500231669353338 0.188120126724244 0.999536661293324 hm5C_site_17873 DeepMRMD:0.188120126724244;iRNA_m5C:0.999536661293324 17874 chrX 153696528 153696528 1 + C G BLCA 153696537 + 153696517 153696557 41 CGCGTGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA CGCGTGCTCTTGCCGGGCATCGAGGCCCACCCGGTGCTCAA < 41bp 1 0.681949179789123 1 0.972847104072571 experiment 0.636101640421755 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696537 chrX:153696528 nonsynonymous SNV 0.988 4 12 hm5C_associated_SNPs_16326 0 0 0 0 1 Endoplasmic reticulum 1 0.500238297730652 0.054305791854858 0.999523404538697 hm5C_site_17874 DeepMRMD:0.054305791854858;iRNA_m5C:0.999523404538697 17875 chr3 184039813 184039813 1 + G C BLCA 184039793 + 184039773 184039813 41 AGCAGGAGAAGCAGGAGAAGCTGAGAGTGAGAAAGGAGGAG AGCAGGAGAAGCAGGAGAAGCTGAGAGTGAGAAAGGAGGAC < 41bp 1 0.556079292545875 1 0.39464282989502 experiment 0.887841414908251 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039793 chr3:184039813 nonsynonymous SNV 0.993 2 41 hm5C_associated_SNPs_16327 0 0 1 0 1 Nucleus 1 0.500231643913045 1 0.999536712173911 hm5C_site_17875 DeepMRMD:1;iRNA_m5C:0.999536712173911 17876 chr17 62223730 62223730 1 + C T BLCA 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTTGTG < 41bp 1 0.129127554059415 1 0.0886106491088867 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223730 . . 0 38 hm5C_associated_SNPs_16328 0 0 1 0 0 unknown 1 0.500231643932031 1 0.999536712135938 hm5C_site_17876 DeepMRMD:1;iRNA_m5C:0.999536712135938 17877 chr17 62223730 62223730 1 + C T BLCA 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTTGTGG < 41bp 1 0.287101315530886 1 0.184623152017593 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223730 . . 0 37 hm5C_associated_SNPs_16329 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_17877 DeepMRMD:1;iRNA_m5C:0.999536712157816 17878 chr17 62223730 62223730 1 + C T BLCA 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTTGTGGC < 41bp 1 0.181333932351105 1 0.115907311439514 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223730 . . 0 36 hm5C_associated_SNPs_16330 0 0 1 0 0 unknown 1 0.500231644367506 1 0.999536711264989 hm5C_site_17878 DeepMRMD:1;iRNA_m5C:0.999536711264989 17879 chr17 62223730 62223730 1 + C T BLCA 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTTGTGGCG < 41bp 1 0.117930772674045 1 0.112449467182159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223730 . . 0 35 hm5C_associated_SNPs_16331 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_17879 DeepMRMD:1;iRNA_m5C:0.999536712157815 17880 chr17 62223730 62223730 1 + C T BLCA 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTTGTGGCGCCGG < 41bp 1 0.524295913567613 1 0.660691440105438 experiment 0.951408172864774 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223730 . . 0 31 hm5C_associated_SNPs_16332 0 0 1 0 0 unknown 1 0.500231643921092 0.678617119789124 0.999536712157815 hm5C_site_17880 DeepMRMD:0.678617119789124;iRNA_m5C:0.999536712157815 17881 chr17 62223730 62223730 1 + C T BLCA 62223727 + 62223707 62223747 41 TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA TTTGAGCCCCCGCCGAGCTTCCTTGTGGCGCCGGGGGTCAA < 41bp 1 0.137185768665015 1 0.0837636590003967 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223727 chr17:62223730 . . 0 24 hm5C_associated_SNPs_16333 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17881 DeepMRMD:1;iRNA_m5C:0.999536712157815 17882 chr17 62223730 62223730 1 + C T BLCA 62223728 + 62223708 62223748 41 TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT TTGAGCCCCCGCCGAGCTTCCTTGTGGCGCCGGGGGTCAAT < 41bp 1 0.395471416321535 1 0.0467757880687714 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223728 chr17:62223730 . . 0 23 hm5C_associated_SNPs_16334 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17882 DeepMRMD:1;iRNA_m5C:0.999536712157815 17883 chr17 62223730 62223730 1 + C T BLCA 62223735 + 62223715 62223755 41 CCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC CCCGCCGAGCTTCCTTGTGGCGCCGGGGGTCAATCTGCAGC < 41bp 1 0.669829401344482 1 0.120219767093658 experiment 0.660341197311037 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223735 chr17:62223730 . . 0 16 hm5C_associated_SNPs_16335 0 0 1 0 0 unknown 1 0.500231644834107 1 0.999536710331786 hm5C_site_17883 DeepMRMD:1;iRNA_m5C:0.999536710331786 17884 chr17 62223730 62223730 1 + C T BLCA 62223745 + 62223725 62223765 41 TTCCTCGTGGCGCCGGGGGTCAATCTGCAGCGCTAGAGCAT TTCCTTGTGGCGCCGGGGGTCAATCTGCAGCGCTAGAGCAT < 41bp 1 0.231129223675796 1 0.141764372587204 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223745 chr17:62223730 . . 0 6 hm5C_associated_SNPs_16336 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_17884 DeepMRMD:1;iRNA_m5C:0.999536712157815 17885 chr20 37150306 37150306 1 + G C BLCA 37150300 + 37150280 37150320 41 CTGTGTAGGATTTTTTGTAGCAAGAAGACTGGAGAAGAGAT CTGTGTAGGATTTTTTGTAGCAAGAACACTGGAGAAGAGAT < 41bp 1 0.529492931654174 1 0.581181883811951 experiment 0.941014136691652 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37150300 chr20:37150306 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_16337 0 0 1 0 1 Nucleus 1 0.50023164384919 0.837636232376098 0.99953671230162 hm5C_site_17885 DeepMRMD:0.837636232376098;iRNA_m5C:0.99953671230162 17886 chr16 67318778 67318778 1 + G A BLCA 67318789 + 67318769 67318809 41 CTGGGCTCAGAGGCCATCCGCCAGGAGTGCCGCTGGGCCTG CTGGGCTCAAAGGCCATCCGCCAGGAGTGCCGCTGGGCCTG < 41bp 1 0.606345916416954 1 0.753966093063354 experiment 0.787308167166092 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67318789 chr16:67318778 nonsynonymous SNV 0.840 2 10 hm5C_associated_SNPs_16338 0 0 0 0 0 Cytosol 1 0.50023164391938 0.492067813873292 0.999536712161241 hm5C_site_17886 DeepMRMD:0.492067813873292;iRNA_m5C:0.999536712161241 17887 chr3 148714612 148714612 1 + C A BLCA 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCAGGAG < 41bp 1 0.404711666856771 1 0.383253812789917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714612 synonymous SNV . 0 37 hm5C_associated_SNPs_16339 0 0 1 0 3 Cytosol 1 0.500231643642314 1 0.999536712715372 hm5C_site_17887 DeepMRMD:1;iRNA_m5C:0.999536712715372 17888 chr14 101419750 101419750 1 + C T BLCA 101419734 + 101419714 101419754 41 TGAGTCATGGACGATGAATACTACGTGTCTGAAACTCTGAG TGAGTCATGGACGATGAATACTACGTGTCTGAAACTTTGAG < 41bp 1 0.524656065133679 1 0.0688657760620117 experiment 0.950687869732643 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419734 chr14:101419750 . . 0 37 hm5C_associated_SNPs_16340 0 0 0 0 0 unknown 1 0.500231643925294 1 0.999536712149412 hm5C_site_17888 DeepMRMD:1;iRNA_m5C:0.999536712149412 17889 chr14 101419750 101419750 1 + C T BLCA 101419742 + 101419722 101419762 41 GGACGATGAATACTACGTGTCTGAAACTCTGAGGTCCAACA GGACGATGAATACTACGTGTCTGAAACTTTGAGGTCCAACA < 41bp 1 0.52364388049572 1 0.179160684347153 experiment 0.952712239008561 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419742 chr14:101419750 . . 0 29 hm5C_associated_SNPs_16341 0 0 0 0 0 unknown 1 0.500231645326942 1 0.999536709346116 hm5C_site_17889 DeepMRMD:1;iRNA_m5C:0.999536709346116 17890 chr14 101419750 101419750 1 + C T BLCA 101419748 + 101419728 101419768 41 TGAATACTACGTGTCTGAAACTCTGAGGTCCAACAGAAAAC TGAATACTACGTGTCTGAAACTTTGAGGTCCAACAGAAAAC < 41bp 1 0.152494483373891 1 0.101998537778854 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419748 chr14:101419750 . . 0 23 hm5C_associated_SNPs_16342 0 0 0 0 0 unknown 1 0.500231643919976 1 0.999536712160048 hm5C_site_17890 DeepMRMD:1;iRNA_m5C:0.999536712160048 17891 chr2 56419936 56419936 1 + G A BLCA 56419925 + 56419905 56419945 41 GGCCAGCCTGTGCCAACTCACAGCCTCCACCGCACCCTACG GGCCAGCCTGTGCCAACTCACAGCCTCCACCACACCCTACG < 41bp 1 0.598139070895552 1 0.655261993408203 experiment 0.803721858208896 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56419925 chr2:56419936 nonsynonymous SNV 0.023 0 32 hm5C_associated_SNPs_16343 0 0 0 0 0 exosome 1 0.500231643921092 0.689476013183594 0.999536712157815 hm5C_site_17891 DeepMRMD:0.689476013183594;iRNA_m5C:0.999536712157815 17892 chr2 101622832 101622832 1 + G A BLCA 101622840 + 101622820 101622860 41 ACAGTCAATGTGGATGAGAACTAATCGCTGATCGTCAGATC ACAGTCAATGTGAATGAGAACTAATCGCTGATCGTCAGATC < 41bp 1 0.230150784588812 1 0.0894710421562195 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622840 chr2:101622832 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_16344 0 0 1 0 1 Cytosol 1 0.500231650522913 1 0.999536698954174 hm5C_site_17892 DeepMRMD:1;iRNA_m5C:0.999536698954174 17893 chr3 184045027 184045027 1 + G A BLCA 184045016 + 184044996 184045036 41 TCTTCCAGGAGTAGCTTGAGCCGAGAACGAGGCGAGAAAGC TCTTCCAGGAGTAGCTTGAGCCGAGAACGAGACGAGAAAGC < 41bp 1 0.316368330678877 1 0.499772608280182 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184045016 chr3:184045027 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_16345 0 0 1 0 1 Nucleus 1 0.500231643921348 1 0.999536712157304 hm5C_site_17893 DeepMRMD:1;iRNA_m5C:0.999536712157304 17894 chr14 93119203 93119203 1 + G A BLCA 93119189 + 93119169 93119209 41 ACGCTTTCCTCTCCAACAACCGCAAGCTGTACAAGAAGGTG ACGCTTTCCTCTCCAACAACCGCAAGCTGTACAAAAAGGTG < 41bp 1 0.368285305311008 1 0.436800569295883 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93119189 chr14:93119203 synonymous SNV . 0 35 hm5C_associated_SNPs_16346 0 0 0 0 0 cytosol 1 0.500231637441749 1 0.999536725116503 hm5C_site_17894 DeepMRMD:1;iRNA_m5C:0.999536725116503 17895 chr3 183854514 183854514 1 + G T BLCA 183854500 + 183854480 183854520 41 TGTCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGAACATT TGTCTTTTGTTGCTGGAAAGCTGCTCAAATCAAATAACATT < 41bp 1 0.372673129440904 1 0.399251401424408 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183854500 chr3:183854514 stopgain 1.000 1 35 hm5C_associated_SNPs_16347 0 0 1 0 1 Ribosome 1 0.500231560514095 1 0.99953687897181 hm5C_site_17895 DeepMRMD:1;iRNA_m5C:0.99953687897181 17896 chr15 63009828 63009828 1 + G A BLCA 63009833 + 63009813 63009853 41 CATCGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACC CATCGCCGCCTCCCAAAATGCAGCTGTTTCCAACAAGAACC < 41bp 1 0.292510736303573 1 0.097975105047226 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009833 chr15:63009828 synonymous SNV . 0 16 hm5C_associated_SNPs_16348 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17896 DeepMRMD:1;iRNA_m5C:0.999536712157815 17897 chr15 63009828 63009828 1 + G A BLCA 63009836 + 63009816 63009856 41 CGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACCCTG CGCCGCCTCCCAAAATGCAGCTGTTTCCAACAAGAACCCTG < 41bp 1 0.059714522157145 1 0.0267840623855591 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009836 chr15:63009828 synonymous SNV . 0 13 hm5C_associated_SNPs_16349 0 0 0 0 2 Nucleus 1 0.500231644352453 1 0.999536711295094 hm5C_site_17897 DeepMRMD:1;iRNA_m5C:0.999536711295094 17898 chr7 151805363 151805363 1 + C A BLCA 151805360 + 151805340 151805380 41 AGGACGAGCGGAGGGAGCCACTGCACCAATAAAGTAAGATC AGGACGAGCGGAGGGAGCCACTGAACCAATAAAGTAAGATC < 41bp 1 0.626942588179144 1 0.744495451450348 experiment 0.746114823641712 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151805360 chr7:151805363 nonsynonymous SNV 0.598 2 24 hm5C_associated_SNPs_16350 0 0 1 0 0 chromatin 1 0.50023163005197 0.511009097099304 0.99953673989606 hm5C_site_17898 DeepMRMD:0.511009097099304;iRNA_m5C:0.99953673989606 17899 chr20 44526704 44526704 1 + G A BLCA 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GACAGCGGGGAGCAGATTGCCAGCTTCGTGAAGGAGTTCTC < 41bp 1 0.65196425486132 1 0.739144325256348 experiment 0.696071490277359 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526704 nonsynonymous SNV 0.366 5 22 hm5C_associated_SNPs_16351 1 0 1 0 2 Ribosome 1 0.500231648428342 0.521711349487304 0.999536703143316 hm5C_site_17899 DeepMRMD:0.521711349487304;iRNA_m5C:0.999536703143316 Galactosialidosis, early infantile Galactosialidosis, early infantile 17900 chr5 43650630 43650630 1 + C A BLCA 43650617 + 43650597 43650637 41 GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCACAACT GGTTGGCACTGATGGGAGGACATTTGTATCCTTACACAACT < 41bp 1 0.144890663156397 1 0.0307874977588654 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43650617 chr5:43650630 nonsynonymous SNV 0.997 1 34 hm5C_associated_SNPs_16352 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157812 hm5C_site_17900 DeepMRMD:1;iRNA_m5C:0.999536712157812 17901 chr9 137593102 137593102 1 + C T BLCA 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACTGCAG < 41bp 1 0.296268796488844 1 0.136741876602173 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593102 nonsynonymous SNV 0.434 3 37 hm5C_associated_SNPs_16353 0 0 1 0 2 Nucleus 1 0.500231643921078 1 0.999536712157843 hm5C_site_17901 DeepMRMD:1;iRNA_m5C:0.999536712157843 17902 chr2 55461976 55461976 1 + C G BLCA 55461971 + 55461951 55461991 41 ATTCTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGA ATTCTTCCATTAACAGGAGTCTACTGTTCATCTTGTGTTGA < 41bp 1 0.249156886017491 1 0.108326494693756 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461971 chr2:55461976 nonsynonymous SNV 0.997 2 26 hm5C_associated_SNPs_16354 0 0 1 2 1 Ribosome 1 0.500231644003568 1 0.999536711992864 hm5C_site_17902 DeepMRMD:1;iRNA_m5C:0.999536711992864 17903 chr2 55461976 55461976 1 + C G BLCA 55461974 + 55461954 55461994 41 CTTCCATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGAC CTTCCATTAACAGGAGTCTACTGTTCATCTTGTGTTGAGAC < 41bp 1 0.152484952873635 1 0.174960434436798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461974 chr2:55461976 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_16355 0 0 1 2 1 Ribosome 1 0.500231642859265 1 0.999536714281471 hm5C_site_17903 DeepMRMD:1;iRNA_m5C:0.999536714281471 17904 chr2 55461976 55461976 1 + C G BLCA 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTGTTCATCTTGTGTTGAGACTTCGT < 41bp 1 0.169259191766767 1 0.0319207012653351 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461976 nonsynonymous SNV 0.997 2 18 hm5C_associated_SNPs_16356 0 0 1 2 1 Ribosome 1 0.500231623718376 1 0.999536752563248 hm5C_site_17904 DeepMRMD:1;iRNA_m5C:0.999536752563248 17905 chr1 26772917 26772917 1 + A T BLCA 26772901 + 26772881 26772921 41 AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTTCAAC < 41bp 1 0.397729568816292 1 0.802390933036804 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772901 chr1:26772917 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_16358 0 0 0 0 1 chromatin 1 0.500231332202037 0.395218133926392 0.999537335595926 hm5C_site_17905 DeepMRMD:0.395218133926392;iRNA_m5C:0.999537335595926 17906 chr1 26772917 26772917 1 + A T BLCA 26772908 + 26772888 26772928 41 TGCACAAGCTGTACAGGCCACGAAGAACTACAACAAGTAAG TGCACAAGCTGTACAGGCCACGAAGAACTTCAACAAGTAAG < 41bp 1 0.25672715974638 1 0.426350861787796 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772908 chr1:26772917 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_16359 0 0 0 0 1 chromatin 1 0.500231322243289 1 0.999537355513422 hm5C_site_17906 DeepMRMD:1;iRNA_m5C:0.999537355513422 17907 chr22 44332964 44332964 1 + C T BLCA 44332984 + 44332964 44333004 41 CATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC TATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC < 41bp 1 0.634664422634449 1 0.096609503030777 experiment 0.730671154731102 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332984 chr22:44332964 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_16361 0 0 1 0 1 cytosol 1 0.500231646212886 1 0.999536707574228 hm5C_site_17907 DeepMRMD:1;iRNA_m5C:0.999536707574228 17908 chr10 17277194 17277194 1 + T C BLCA 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGCGA < 41bp 1 0.149272617948908 1 0.116398513317108 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277194 synonymous SNV . 0 39 hm5C_associated_SNPs_16362 0 0 1 0 1 Ribosome 1 0.500231644657933 1 0.999536710684134 hm5C_site_17908 DeepMRMD:1;iRNA_m5C:0.999536710684134 17909 chr10 17277194 17277194 1 + T C BLCA 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTCCCTGGAACGCCAGATGCGCGAAATGGAAGA < 41bp 1 0.470472325807158 1 0.604159235954285 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277194 synonymous SNV . 0 30 hm5C_associated_SNPs_16363 0 0 1 0 1 Ribosome 1 0.500231643921124 0.79168152809143 0.999536712157753 hm5C_site_17909 DeepMRMD:0.79168152809143;iRNA_m5C:0.999536712157753 17910 chr3 191074896 191074896 1 + C T BLCA 191074906 + 191074886 191074926 41 ATTTTGCTGTCCTGGAGGACCACACCCTGGCTCACAGCCTG ATTTTGCTGTTCTGGAGGACCACACCCTGGCTCACAGCCTG < 41bp 1 0.454568717191343 1 0.329359233379364 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191074906 chr3:191074896 synonymous SNV . 0 11 hm5C_associated_SNPs_16364 0 0 1 0 1 Ribosome 1 0.500231643825833 1 0.999536712348334 hm5C_site_17910 DeepMRMD:1;iRNA_m5C:0.999536712348334 17911 chr12 104327817 104327817 1 + C T BLCA 104327808 + 104327788 104327828 41 AGAGAAGAGTTGGTTAAAAACCTTGGTACCATAGCCAAATC AGAGAAGAGTTGGTTAAAAACCTTGGTACTATAGCCAAATC < 41bp 1 0.21753976377117 1 0.100308388471603 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104327808 chr12:104327817 synonymous SNV . 0 30 hm5C_associated_SNPs_16365 0 0 1 0 0 Nucleus 1 0.500231643245934 1 0.999536713508131 hm5C_site_17911 DeepMRMD:1;iRNA_m5C:0.999536713508131 17912 chr11 108206598 108206598 1 + T A BLCA 108206601 + 108206581 108206621 41 GACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT GACCTGAGACAAGATGCAGTCATGCAACAGGTCTTCCAGAT < 41bp 1 0.18674842000639 1 0.236451596021652 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108206601 chr11:108206598 synonymous SNV . 0 18 hm5C_associated_SNPs_16366 0 0 1 0 2 Nucleus 1 0.500231349581012 1 0.999537300837975 hm5C_site_17912 DeepMRMD:1;iRNA_m5C:0.999537300837975 17913 chr3 57994400 57994400 1 + A G BLCA 57994397 + 57994377 57994417 41 ACCTCAAGTGCGTGAACAAACGCATCGGCAACCTGCAGACC ACCTCAAGTGCGTGAACAAACGCGTCGGCAACCTGCAGACC < 41bp 1 0.598970453243987 1 0.0914711058139801 experiment 0.802059093512027 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:57994397 chr3:57994400 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_16367 0 0 0 0 0 Cytosol 1 0.500219357381002 1 0.999561285237996 hm5C_site_17913 DeepMRMD:1;iRNA_m5C:0.999561285237996 17914 chr3 57994400 57994400 1 + A G BLCA 57994399 + 57994379 57994419 41 CTCAAGTGCGTGAACAAACGCATCGGCAACCTGCAGACCGA CTCAAGTGCGTGAACAAACGCGTCGGCAACCTGCAGACCGA < 41bp 1 0.271586471970629 1 0.191821902990341 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:57994399 chr3:57994400 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_16368 0 0 0 0 0 Cytosol 1 0.500231656794424 1 0.999536686411152 hm5C_site_17914 DeepMRMD:1;iRNA_m5C:0.999536686411152 17915 chr12 56495511 56495511 1 + C G BLCA 56495521 + 56495501 56495541 41 CTCAGTGCCTCTCTGGGCAGCACACAGAGTTGCCCACTCCA CTCAGTGCCTGTCTGGGCAGCACACAGAGTTGCCCACTCCA < 41bp 1 0.171006698376174 1 0.0848954916000366 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56495521 chr12:56495511 nonsynonymous SNV 0.992 2 11 hm5C_associated_SNPs_16370 0 0 1 0 0 Cytosol 1 0.500243269900083 1 0.999513460199834 hm5C_site_17915 DeepMRMD:1;iRNA_m5C:0.999513460199834 17916 chr6 7566637 7566637 1 + G C BLCA 7566648 + 7566628 7566668 41 GAAGTTAAAGAAAAAGAGCTCAATAAGCTGAAACAAGAAAG GAAGTTAAACAAAAAGAGCTCAATAAGCTGAAACAAGAAAG < 41bp 1 0.143717568459191 1 0.174824416637421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7566648 chr6:7566637 nonsynonymous SNV 1.000 5 10 hm5C_associated_SNPs_16371 1 0 1 0 2 Nucleus 1 0.500240124735774 1 0.999519750528452 hm5C_site_17916 DeepMRMD:1;iRNA_m5C:0.999519750528452 not specified not specified 17917 chr1 144598726 144598726 1 + A C BLCA 144598720 + 144598700 144598740 41 GATGTAGAAACTTCCCCATTCGGTGCACCAAGAGCAACCTC GATGTAGAAACTTCCCCATTCGGTGCCCCAAGAGCAACCTC < 41bp 1 0.259777367004075 1 0.697445392608643 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF8 ENSG00000225241 ncRNA_exonic Human other chr1:144598720 chr1:144598726 . . 0 27 hm5C_associated_SNPs_16372 0 0 1 0 1 Cytosol 1 0.500231643921092 0.605109214782714 0.999536712157815 hm5C_site_17917 DeepMRMD:0.605109214782714;iRNA_m5C:0.999536712157815 17918 chr3 170009715 170009715 1 + G C BLCA 170009695 + 170009675 170009715 41 TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAC < 41bp 1 0.102169429991745 1 0.0453120172023773 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:170009695 chr3:170009715 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_16373 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17918 DeepMRMD:1;iRNA_m5C:0.999536712157815 17919 chr1 201751631 201751631 1 + C T BLCA 201751618 + 201751598 201751638 41 ACAGTGCAGAGCCAGGATTCCTGGCTCCTGGAGCCCGTTCT ACAGTGCAGAGCCAGGATTCCTGGCTCCTGGAGTCCGTTCT < 41bp 1 0.302266901575163 1 0.104499369859695 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NAV1 ENSG00000134369 CDS Human protein_coding chr1:201751618 chr1:201751631 nonsynonymous SNV 0.993 4 34 hm5C_associated_SNPs_16374 0 0 0 0 0 Nucleus 1 0.500241136679686 1 0.999517726640628 hm5C_site_17919 DeepMRMD:1;iRNA_m5C:0.999517726640628 17920 chr17 79411485 79411485 1 + G A BLCA 79411468 + 79411448 79411488 41 CGAGCAGCTGCCCTGGGGACCTGGCCCCCCACCTCATGATG CGAGCAGCTGCCCTGGGGACCTGGCCCCCCACCTCATAATG < 41bp 1 0.204850474976257 1 0.550970554351807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79411468 chr17:79411485 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_16375 0 0 0 0 1 chromatin 1 0.500231643921092 0.898058891296386 0.999536712157815 hm5C_site_17920 DeepMRMD:0.898058891296386;iRNA_m5C:0.999536712157815 17921 chr10 104129685 104129685 1 + C T BLCA 104129695 + 104129675 104129715 41 GTCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCA GTCTAGTGTTTGGGGCCCATCCACTGAAAACCAAGAGGCCA < 41bp 1 0.216277241381266 1 0.450533211231232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129695 chr10:104129685 nonsynonymous SNV 0.996 4 11 hm5C_associated_SNPs_16376 0 0 1 0 2 Nucleus 1 0.50023164392086 1 0.999536712158279 hm5C_site_17921 DeepMRMD:1;iRNA_m5C:0.999536712158279 17922 chr10 104129685 104129685 1 + C T BLCA 104129696 + 104129676 104129716 41 TCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCAA TCTAGTGTTTGGGGCCCATCCACTGAAAACCAAGAGGCCAA < 41bp 1 0.543029489357408 1 0.684975326061249 experiment 0.913941021285184 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129696 chr10:104129685 nonsynonymous SNV 0.996 4 10 hm5C_associated_SNPs_16377 0 0 1 0 2 Nucleus 1 0.500231643921093 0.630049347877502 0.999536712157815 hm5C_site_17922 DeepMRMD:0.630049347877502;iRNA_m5C:0.999536712157815 17923 chr9 100756947 100756947 1 + A T BLCA 100756966 + 100756946 100756986 41 AATGATGGAAAAATTGAGGGCTTAACAGCTGAATTTGTGAA ATTGATGGAAAAATTGAGGGCTTAACAGCTGAATTTGTGAA < 41bp 1 0.178577131334058 1 0.160068809986115 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100756966 chr9:100756947 nonsynonymous SNV 0.995 0 2 hm5C_associated_SNPs_16378 0 0 0 0 1 Cytosol 1 0.500231643892372 1 0.999536712215257 hm5C_site_17923 DeepMRMD:1;iRNA_m5C:0.999536712215257 17924 chr7 149419541 149419541 1 + G A BLCA 149419527 + 149419507 149419547 41 CAACAGAAACTGCCGACAAACCGTGGCCTACAAGGAAGGAA CAACAGAAACTGCCGACAAACCGTGGCCTACAAGAAAGGAA < 41bp 1 0.152209607969887 1 0.550856471061707 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149419527 chr7:149419541 synonymous SNV . 0 35 hm5C_associated_SNPs_16379 0 0 0 0 1 Cytosol 1 0.500236744313754 0.898287057876586 0.999526511372491 hm5C_site_17924 DeepMRMD:0.898287057876586;iRNA_m5C:0.999526511372491 17925 chr6 7572193 7572193 1 + G C BLCA 7572176 + 7572156 7572196 41 ACAAGCAAGAAACATGGATGCTGATGGAGCTGCAGAAGATT ACAAGCAAGAAACATGGATGCTGATGGAGCTGCAGAACATT < 41bp 1 0.202795976394274 1 0.0783620178699493 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572176 chr6:7572193 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_16380 0 0 1 0 0 Nucleus 1 0.500241190629503 1 0.999517618740995 hm5C_site_17925 DeepMRMD:1;iRNA_m5C:0.999517618740995 17926 chr11 9463660 9463660 1 + G T BLCA 9463671 + 9463651 9463691 41 TGGTATCAGGCACTGACTCACGGTCTTAATGAAGAACAAAG TGGTATCAGTCACTGACTCACGGTCTTAATGAAGAACAAAG < 41bp 1 0.198003026680993 1 0.172078311443329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9463671 chr11:9463660 nonsynonymous SNV 0.996 1 10 hm5C_associated_SNPs_16381 0 0 1 0 2 Cytosol 1 0.500231646828963 1 0.999536706342073 hm5C_site_17926 DeepMRMD:1;iRNA_m5C:0.999536706342073 17927 chr17 66251937 66251937 1 + C T BLCA 66251944 + 66251924 66251964 41 GGAAGAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT GGAAGAAGCTGACTGGCGCCCTCTAAACCTTTGCCCTATCT < 41bp 1 0.670751530485016 1 0.727237224578857 experiment 0.658496939029968 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control AMZ2 ENSG00000196704 CDS Human protein_coding chr17:66251944 chr17:66251937 nonsynonymous SNV 0.998 4 14 hm5C_associated_SNPs_16382 0 0 1 0 2 Ribosome 1 0.500231643921092 0.545525550842286 0.999536712157815 hm5C_site_17927 DeepMRMD:0.545525550842286;iRNA_m5C:0.999536712157815 17928 chr4 3319328 3319328 1 + T G BLCA 3319346 + 3319326 3319366 41 TGTCCGGACCCCGAAGGGAGCCCCCCATTTGAGGCCGCTCA TGGCCGGACCCCGAAGGGAGCCCCCCATTTGAGGCCGCTCA < 41bp 1 0.0878901008195971 1 0.156270980834961 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3319346 chr4:3319328 nonsynonymous SNV 0.059 1 3 hm5C_associated_SNPs_16383 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17928 DeepMRMD:1;iRNA_m5C:0.999536712157815 17929 chr1 45243706 45243706 1 + G T BLCA 45243698 + 45243678 45243718 41 GAGGAAGAAGAGATTTTAAACAAAAAACGATCTAAAAAAAT GAGGAAGAAGAGATTTTAAACAAAAAACTATCTAAAAAAAT < 41bp 1 0.421011583985309 1 0.486075788736343 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243698 chr1:45243706 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_16384 0 0 1 0 2 Cytosol 1 0.500231643982529 1 0.999536712034942 hm5C_site_17929 DeepMRMD:1;iRNA_m5C:0.999536712034942 17930 chr1 45243706 45243706 1 + G T BLCA 45243709 + 45243689 45243729 41 GATTTTAAACAAAAAACGATCTAAAAAAATTCAGAAGAAAT GATTTTAAACAAAAAACTATCTAAAAAAATTCAGAAGAAAT < 41bp 1 0.402833340074542 1 0.272360861301422 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243709 chr1:45243706 nonsynonymous SNV 0.999 1 18 hm5C_associated_SNPs_16385 0 0 1 0 2 Cytosol 1 0.500247433747723 1 0.999505132504553 hm5C_site_17930 DeepMRMD:1;iRNA_m5C:0.999505132504553 17931 chr2 30756161 30756161 1 + C G BLCA 30756147 + 30756127 30756167 41 TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTCTCAAAGGT TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTCTGAAAGGT < 41bp 1 0.679973561492581 1 0.715710520744324 experiment 0.640052877014837 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30756147 chr2:30756161 synonymous SNV . 0 35 hm5C_associated_SNPs_16386 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643767441 0.568578958511352 0.999536712465117 hm5C_site_17931 DeepMRMD:0.568578958511352;iRNA_m5C:0.999536712465117 17932 chr19 18543829 18543829 1 + C T BLCA 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATTGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG < 41bp 1 0.157117218735885 1 0.408476740121841 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543829 synonymous SNV . 0 10 hm5C_associated_SNPs_16387 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17932 DeepMRMD:1;iRNA_m5C:0.999536712157815 17933 chr19 18543829 18543829 1 + C T BLCA 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATTGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG < 41bp 1 0.688306306760948 1 0.545497298240662 experiment 0.623387386478105 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543829 synonymous SNV . 0 9 hm5C_associated_SNPs_16388 0 0 1 0 2 Ribosome 1 0.500231643985153 0.909005403518676 0.999536712029694 hm5C_site_17933 DeepMRMD:0.909005403518676;iRNA_m5C:0.999536712029694 17934 chr12 56495505 56495505 1 + G T BLCA 56495521 + 56495501 56495541 41 CTCAGTGCCTCTCTGGGCAGCACACAGAGTTGCCCACTCCA CTCATTGCCTCTCTGGGCAGCACACAGAGTTGCCCACTCCA < 41bp 1 0.131170880460414 1 0.0881633758544922 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56495521 chr12:56495505 nonsynonymous SNV 0.998 4 5 hm5C_associated_SNPs_16389 0 0 1 0 0 Cytosol 1 0.500231648824987 1 0.999536702350026 hm5C_site_17934 DeepMRMD:1;iRNA_m5C:0.999536702350026 17935 chr11 85977176 85977176 1 + C T BLCA 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTTTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA < 41bp 1 0.159370842293377 1 0.111149370670319 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977176 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_16390 0 0 1 0 2 Ribosome 1 0.500231643921172 1 0.999536712157657 hm5C_site_17935 DeepMRMD:1;iRNA_m5C:0.999536712157657 17936 chr13 48936983 48936983 1 + C T BLCA 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTCACCTTGAACACCCAGGCGAGGTCAGAACAGGAGTGCA < 41bp 1 0.641271483930132 1 0.854509949684143 experiment 0.717457032139735 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48936983 stopgain 1.000 1 9 hm5C_associated_SNPs_16391 1 0 0 0 1 Nucleus 1 0.500231648257893 0.290980100631714 0.999536703484215 hm5C_site_17936 DeepMRMD:0.290980100631714;iRNA_m5C:0.999536703484215 Hereditary cancer-predisposing syndrome Hereditary cancer-predisposing syndrome 17937 chr1 39824525 39824525 1 + G C BLCA 39824528 + 39824508 39824548 41 ACCCTGGAGTTCTCCAGGAGCAGCTTGCAACAACAAAGGTA ACCCTGGAGTTCTCCAGCAGCAGCTTGCAACAACAAAGGTA < 41bp 1 0.158554404500056 1 0.304398864507675 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39824528 chr1:39824525 nonsynonymous SNV 0.559 0 18 hm5C_associated_SNPs_16392 0 0 1 0 1 Endoplasmic reticulum 1 0.500231713054082 1 0.999536573891836 hm5C_site_17937 DeepMRMD:1;iRNA_m5C:0.999536573891836 17938 chr12 65563434 65563434 1 + C G BLCA 65563448 + 65563428 65563468 41 TTCTCTCAGCTCCGCCGTTACGGCCTGTCTCCCGGACCAGT TTCTCTGAGCTCCGCCGTTACGGCCTGTCTCCCGGACCAGT < 41bp 1 0.539509640704958 1 0.239217609167099 experiment 0.920980718590085 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65563448 chr12:65563434 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_16393 0 0 1 0 0 Endoplasmic reticulum 1 0.500231758123245 1 0.999536483753511 hm5C_site_17938 DeepMRMD:1;iRNA_m5C:0.999536483753511 17939 chr4 123814162 123814162 1 + C T BLCA 123814174 - 123814154 123814194 41 AGTGGATGGATCTCAATGACCTGGCGAAGACTGAAAATACA AGTGGATGGATCTCAATGACCTGGCGAAGACTAAAAATACA < 41bp 1 0.645116661200773 1 0.46162223815918 experiment 0.709766677598455 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT6 ENSG00000170917 CDS Human protein_coding chr4:123814174 chr4:123814162 nonsynonymous SNV 0.021 0 33 hm5C_associated_SNPs_16394 0 0 1 0 0 Ribosome 1 0.500233154369646 1 0.999533691260709 hm5C_site_17939 DeepMRMD:1;iRNA_m5C:0.999533691260709 17940 chr1 227171804 227171804 1 + G A BLCA 227171811 + 227171791 227171831 41 CCAGGGACCTGCTGAAGGGCCACCCCTTCTTCTATGTGCCT CCAGGGACCTGCTAAAGGGCCACCCCTTCTTCTATGTGCCT < 41bp 1 0.155121043738025 1 0.0899141430854797 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171811 chr1:227171804 synonymous SNV . 0 14 hm5C_associated_SNPs_16395 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17940 DeepMRMD:1;iRNA_m5C:0.999536712157815 17941 chr1 33237295 33237295 1 + C T BLCA 33237305 + 33237285 33237325 41 TCCTCCAGCTCCGCCAGCCCCAGCTCCTGCTAGTTCCGCCC TCCTCCAGCTTCGCCAGCCCCAGCTCCTGCTAGTTCCGCCC < 41bp 1 0.356546918690992 1 0.336850345134735 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33237305 chr1:33237295 nonsynonymous SNV 0.006 0 11 hm5C_associated_SNPs_16397 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_17941 DeepMRMD:1;iRNA_m5C:0.999536712157815 17942 chr11 120317138 120317138 1 + G A BLCA 120317136 + 120317116 120317156 41 GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCCACT GAGAAGACCTGAGCTCATTCCTAAGGATCTGCATCGCCACT < 41bp 1 0.26774311976998 1 0.418781518936157 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120317136 chr11:120317138 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_16398 0 0 1 0 2 Cytosol 1 0.500231645943316 1 0.999536708113369 hm5C_site_17942 DeepMRMD:1;iRNA_m5C:0.999536708113369 17943 chr18 74625763 74625763 1 + G A BLCA 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGCGGTCACACACCGGGGAAAAGCCCTAC < 41bp 1 0.36212741968115 1 0.0385542213916779 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625763 synonymous SNV . 0 20 hm5C_associated_SNPs_16400 0 0 0 0 2 Cytosol 1 0.500291417160719 1 0.999417165678562 hm5C_site_17943 DeepMRMD:1;iRNA_m5C:0.999417165678562 17944 chr5 132203221 132203221 1 + G A BLCA 132203205 + 132203185 132203225 41 GTAGTGTTTTATCTTATCTACACATGGGGGACTGAAGAGTT GTAGTGTTTTATCTTATCTACACATGGGGGACTGAAAAGTT < 41bp 1 0.281333168783773 1 0.138280987739563 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132203205 chr5:132203221 nonsynonymous SNV 0.616 1 37 hm5C_associated_SNPs_16401 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17944 DeepMRMD:1;iRNA_m5C:0.999536712157815 17945 chr5 132203221 132203221 1 + G A BLCA 132203207 + 132203187 132203227 41 AGTGTTTTATCTTATCTACACATGGGGGACTGAAGAGTTCG AGTGTTTTATCTTATCTACACATGGGGGACTGAAAAGTTCG < 41bp 1 0.435932394679226 1 0.242934256792068 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132203207 chr5:132203221 nonsynonymous SNV 0.616 1 35 hm5C_associated_SNPs_16402 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17945 DeepMRMD:1;iRNA_m5C:0.999536712157815 17946 chr5 132203221 132203221 1 + G A BLCA 132203216 + 132203196 132203236 41 TCTTATCTACACATGGGGGACTGAAGAGTTCGAGAGATCCA TCTTATCTACACATGGGGGACTGAAAAGTTCGAGAGATCCA < 41bp 1 0.554581724275983 1 0.302040338516235 experiment 0.890836551448034 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132203216 chr5:132203221 nonsynonymous SNV 0.616 1 26 hm5C_associated_SNPs_16403 0 0 1 0 0 Cytosol 1 0.500233082667918 1 0.999533834664164 hm5C_site_17946 DeepMRMD:1;iRNA_m5C:0.999533834664164 17947 chr11 67075660 67075660 1 + G A BLCA 67075677 + 67075657 67075697 41 CTGGAGCTGCGCCTGGGGCTCCCCCTCCAGCAGTACCGTGA CTGAAGCTGCGCCTGGGGCTCCCCCTCCAGCAGTACCGTGA < 41bp 1 0.173316523704554 1 0.0954318046569824 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075677 chr11:67075660 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_16404 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17947 DeepMRMD:1;iRNA_m5C:0.999536712157815 17948 chr6 36569567 36569567 1 + C T BLCA 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTTGTAGGT < 41bp 1 0.0240904745715205 1 0.0315025150775909 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569567 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_16405 0 0 1 0 2 Ribosome 1 0.500231644683503 1 0.999536710632994 hm5C_site_17948 DeepMRMD:1;iRNA_m5C:0.999536710632994 17949 chr19 49377554 49377554 1 + A C BLCA 49377573 + 49377553 49377593 41 GATGAGGAAGAAGATGAGGACAGTGACTCTGGATCAGATGA GCTGAGGAAGAAGATGAGGACAGTGACTCTGGATCAGATGA < 41bp 1 0.361332849699886 1 0.153983026742935 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377573 chr19:49377554 nonsynonymous SNV 0.965 1 2 hm5C_associated_SNPs_16406 0 0 1 0 0 Cytosol 1 0.500231644007384 1 0.999536711985233 hm5C_site_17949 DeepMRMD:1;iRNA_m5C:0.999536711985233 17950 chr2 219525710 219525710 1 + G A BLCA 219525721 + 219525701 219525741 41 CCCTTTCAAGATGCCACTTTCAGACTTTATTCTGGCTCTGA CCCTTTCAAAATGCCACTTTCAGACTTTATTCTGGCTCTGA < 41bp 1 0.379146018969179 1 0.16739359498024 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCS1L ENSG00000074582 UTR5 Human protein_coding chr2:219525721 chr2:219525710 . . 0 10 hm5C_associated_SNPs_16407 0 0 1 0 1 chromatin 1 0.500231643921058 1 0.999536712157884 hm5C_site_17950 DeepMRMD:1;iRNA_m5C:0.999536712157884 17951 chr5 132427046 132427046 1 + C T BLCA 132427041 + 132427021 132427061 41 AAATGAGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG AAATGAGGAGCCAATGGAAACAGATTAGAATGCAAAGGAGG < 41bp 1 0.384663839298913 1 0.501973807811737 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427041 chr5:132427046 stopgain 0.999 1 26 hm5C_associated_SNPs_16408 0 0 1 0 1 Cytosol 1 0.500231643920844 0.996052384376526 0.999536712158313 hm5C_site_17951 DeepMRMD:0.996052384376526;iRNA_m5C:0.999536712158313 17952 chr5 132427046 132427046 1 + C T BLCA 132427053 + 132427033 132427073 41 AATGGAAACAGATCAGAATGCAAAGGAGGAAGAGGTAATCT AATGGAAACAGATTAGAATGCAAAGGAGGAAGAGGTAATCT < 41bp 1 0.540598250132298 1 0.332778781652451 experiment 0.918803499735404 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427053 chr5:132427046 stopgain 0.999 1 14 hm5C_associated_SNPs_16409 0 0 1 0 1 Cytosol 1 0.50023164392369 1 0.99953671215262 hm5C_site_17952 DeepMRMD:1;iRNA_m5C:0.99953671215262 17953 chr17 55055498 55055498 1 + G A BLCA 55055496 + 55055476 55055516 41 GCGCCGGGTCCAGCCTGTTGCTGATGCTGCCGTGCGGTACT GCGCCGGGTCCAGCCTGTTGCTAATGCTGCCGTGCGGTACT < 41bp 1 0.609005430721238 1 0.102101773023605 experiment 0.781989138557525 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCPEP1 ENSG00000121064 UTR5 Human protein_coding chr17:55055496 chr17:55055498 . . 0 23 hm5C_associated_SNPs_16410 0 0 0 0 1 Ribosome 1 0.500231636532786 1 0.999536726934427 hm5C_site_17953 DeepMRMD:1;iRNA_m5C:0.999536726934427 17954 chr19 42796593 42796593 1 + C T BLCA 42796582 + 42796562 42796602 41 TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTG TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCTGCCTTCGTG < 41bp 1 0.0683754921907087 1 0.13810595870018 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796582 chr19:42796593 synonymous SNV . 0 32 hm5C_associated_SNPs_16411 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_17954 DeepMRMD:1;iRNA_m5C:0.999536712157815 17955 chr19 42796593 42796593 1 + C T BLCA 42796583 + 42796563 42796603 41 AGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGC AGGCTTCACCTCGCTGGGGCCCAGCGGCCCTGCCTTCGTGC < 41bp 1 0.135285285874647 1 0.502038359642029 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796583 chr19:42796593 synonymous SNV . 0 31 hm5C_associated_SNPs_16412 0 0 0 0 1 Cytosol 1 0.500228106615121 0.995923280715942 0.999543786769757 hm5C_site_17955 DeepMRMD:0.995923280715942;iRNA_m5C:0.999543786769757 17956 chr19 42796593 42796593 1 + C T BLCA 42796590 + 42796570 42796610 41 ACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCT ACCTCGCTGGGGCCCAGCGGCCCTGCCTTCGTGCAGCCCCT < 41bp 1 0.0839667665589673 1 0.18510964512825 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796590 chr19:42796593 synonymous SNV . 0 24 hm5C_associated_SNPs_16413 0 0 0 0 1 Cytosol 1 0.500231643940316 1 0.999536712119368 hm5C_site_17956 DeepMRMD:1;iRNA_m5C:0.999536712119368 17957 chr19 42796593 42796593 1 + C T BLCA 42796591 + 42796571 42796611 41 CCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTG CCTCGCTGGGGCCCAGCGGCCCTGCCTTCGTGCAGCCCCTG < 41bp 1 0.0857528891835719 1 0.192367792129517 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796591 chr19:42796593 synonymous SNV . 0 23 hm5C_associated_SNPs_16414 0 0 0 0 1 Cytosol 1 0.500231643762863 1 0.999536712474274 hm5C_site_17957 DeepMRMD:1;iRNA_m5C:0.999536712474274 17958 chr19 42796593 42796593 1 + C T BLCA 42796592 + 42796572 42796612 41 CTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGC CTCGCTGGGGCCCAGCGGCCCTGCCTTCGTGCAGCCCCTGC < 41bp 1 0.337208259803771 1 0.0818429589271545 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796592 chr19:42796593 synonymous SNV . 0 22 hm5C_associated_SNPs_16415 0 0 0 0 1 Cytosol 1 0.500231644102801 1 0.999536711794398 hm5C_site_17958 DeepMRMD:1;iRNA_m5C:0.999536711794398 17959 chr20 60879624 60879624 1 + C T BLCA 60879621 + 60879601 60879641 41 GCAGGGTCCAAGCGGCTTTTCTTCTGGATGCAGGTATGGGG GCAGGGTCCAAGCGGCTTTTCTTTTGGATGCAGGTATGGGG < 41bp 1 0.100450879233043 1 0.121293812990189 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60879621 chr20:60879624 synonymous SNV . 0 24 hm5C_associated_SNPs_16416 0 0 1 0 1 Ribosome 1 0.500231643921124 1 0.999536712157752 hm5C_site_17959 DeepMRMD:1;iRNA_m5C:0.999536712157752 17960 chr1 25889141 25889141 1 + G A BLCA 25889142 + 25889122 25889162 41 TTCCTGTTTTCAGGCACAGGCTGTTACCCTCACCGTAGCCC TTCCTGTTTTCAGGCACAGACTGTTACCCTCACCGTAGCCC < 41bp 1 0.1637955371958 1 0.0711866617202759 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LDLRAP1 ENSG00000157978 CDS Human protein_coding chr1:25889142 chr1:25889141 nonsynonymous SNV 0.922 1 20 hm5C_associated_SNPs_16417 0 0 1 0 2 Ribosome 1 0.500231643905995 1 0.99953671218801 hm5C_site_17960 DeepMRMD:1;iRNA_m5C:0.99953671218801 17961 chr2 32773024 32773024 1 + G A BLCA 32773028 + 32773008 32773048 41 CTTCTGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGG CTTCTGGGTGGGATGTAGAACAAGCCTTAACTAAGCAAAGG < 41bp 1 0.180993993980462 1 0.471253275871277 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773028 chr2:32773024 synonymous SNV . 0 17 hm5C_associated_SNPs_16418 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17961 DeepMRMD:1;iRNA_m5C:0.999536712157815 17962 chr2 32773024 32773024 1 + G A BLCA 32773033 + 32773013 32773053 41 GGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGGCTGGA GGGTGGGATGTAGAACAAGCCTTAACTAAGCAAAGGCTGGA < 41bp 1 0.173915092308789 1 0.0848912298679352 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773033 chr2:32773024 synonymous SNV . 0 12 hm5C_associated_SNPs_16419 0 0 1 0 1 Nucleus 1 0.500231644622412 1 0.999536710755176 hm5C_site_17962 DeepMRMD:1;iRNA_m5C:0.999536710755176 17963 chr2 32773024 32773024 1 + G A BLCA 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TAGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT < 41bp 1 0.163023061129631 1 0.639290690422058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773024 synonymous SNV . 0 2 hm5C_associated_SNPs_16420 0 0 1 0 1 Nucleus 1 0.500231644060994 0.721418619155884 0.999536711878012 hm5C_site_17963 DeepMRMD:0.721418619155884;iRNA_m5C:0.999536711878012 17964 chr22 42271620 42271620 1 + G A BLCA 42271638 + 42271618 42271658 41 CAGAATGTCCTTCTGATGTCCCCCCCAGCCTCTGACTCAGG CAAAATGTCCTTCTGATGTCCCCCCCAGCCTCTGACTCAGG < 41bp 1 0.0338788154838602 1 0.045524001121521 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42271638 chr22:42271620 synonymous SNV . 0 3 hm5C_associated_SNPs_16421 0 0 1 0 1 Ribosome 1 0.500231643931325 1 0.99953671213735 hm5C_site_17964 DeepMRMD:1;iRNA_m5C:0.99953671213735 17965 chr19 48833652 48833652 1 + C T BLCA 48833670 + 48833650 48833690 41 TTCGCCCTGGCCTGGGTGGCCTTCCCCCTCGCCCTGGTCAG TTTGCCCTGGCCTGGGTGGCCTTCCCCCTCGCCCTGGTCAG < 41bp 1 0.373439534675535 1 0.0389647483825684 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48833670 chr19:48833652 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_16422 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_17965 DeepMRMD:1;iRNA_m5C:0.999536712157815 17966 chr17 43220896 43220896 1 + C A BLCA 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TCGTAGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG < 41bp 1 0.416707390391612 1 0.807047367095947 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220896 stopgain 0.978 0 5 hm5C_associated_SNPs_16423 0 0 1 0 1 Cytosol 1 0.500231643921688 0.385905265808106 0.999536712156625 hm5C_site_17966 DeepMRMD:0.385905265808106;iRNA_m5C:0.999536712156625 17967 chr14 97342439 97342439 1 + G A BLCA 97342429 + 97342409 97342449 41 GAAGATACGGAATGGTCAAACACACAGACAGAGGAGGCCAT GAAGATACGGAATGGTCAAACACACAGACAAAGGAGGCCAT < 41bp 1 0.538306261397428 1 0.404437154531479 experiment 0.923387477205144 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VRK1 ENSG00000100749 CDS Human protein_coding chr14:97342429 chr14:97342439 nonsynonymous SNV 0.445 0 31 hm5C_associated_SNPs_16424 0 0 1 0 2 Nucleus 1 0.500231641766403 1 0.999536716467195 hm5C_site_17967 DeepMRMD:1;iRNA_m5C:0.999536716467195 17968 chr22 30038263 30038263 1 + G T BLCA 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCTTCCAG < 41bp 1 0.650008692571167 1 0.492617517709732 experiment 0.699982614857666 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038263 nonsynonymous SNV 0.806 4 36 hm5C_associated_SNPs_16425 0 0 1 0 2 Ribosome 1 0.500231643897117 1 0.999536712205765 hm5C_site_17968 DeepMRMD:1;iRNA_m5C:0.999536712205765 17969 chr17 18220896 18220896 1 + C T BLCA 18220876 + 18220856 18220896 41 TGCTGTATTGGGAAGGAGAGCGATGGTCAGTTGGTGCTGCC TGCTGTATTGGGAAGGAGAGCGATGGTCAGTTGGTGCTGCT < 41bp 1 0.289707767631854 1 0.748043417930603 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMCR8 ENSG00000176994 CDS Human protein_coding chr17:18220876 chr17:18220896 nonsynonymous SNV 0.000 0 41 hm5C_associated_SNPs_16426 0 0 1 0 0 chromatin 1 0.500231610879904 0.503913164138794 0.999536778240192 hm5C_site_17969 DeepMRMD:0.503913164138794;iRNA_m5C:0.999536778240192 17970 chr4 169630220 169630220 1 + G A BLCA 169630201 + 169630181 169630221 41 GAGATTTGCACCCTAGTTATCGCTGAGACTTTCCCTGAAGA GAGATTTGCACCCTAGTTATCGCTGAGACTTTCCCTGAAAA < 41bp 1 0.223236958459679 1 0.626985907554626 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169630201 chr4:169630220 nonsynonymous SNV 0.994 3 40 hm5C_associated_SNPs_16427 0 0 1 0 2 Cytosol 1 0.500231643921091 0.746028184890748 0.999536712157818 hm5C_site_17970 DeepMRMD:0.746028184890748;iRNA_m5C:0.999536712157818 17971 chr19 46202132 46202132 1 + G A BLCA 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCCTCGCACGGTCCACTGGTTCCATCGGC < 41bp 1 0.126799929419906 1 0.925984144210815 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202132 nonsynonymous SNV 0.903 1 27 hm5C_associated_SNPs_16428 0 0 1 0 2 chromatin 1 0.500231643921092 0.14803171157837 0.999536712157815 hm5C_site_17971 DeepMRMD:0.14803171157837;iRNA_m5C:0.999536712157815 17972 chr11 71946178 71946178 1 + G C BLCA 71946183 + 71946163 71946203 41 AAACCAATTCTGGCTGATATCGAGTACCTGCAGGACCAGCA AAACCAATTCTGGCTCATATCGAGTACCTGCAGGACCAGCA < 41bp 1 0.588828513335593 1 0.789676666259766 experiment 0.822342973328815 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946183 chr11:71946178 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_16429 0 0 1 0 2 Cytosol 1 0.500301198140253 0.420646667480468 0.999397603719495 hm5C_site_17972 DeepMRMD:0.420646667480468;iRNA_m5C:0.999397603719495 17973 chr6 32944218 32944218 1 + C A BLCA 32944227 + 32944207 32944247 41 TTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAGGTATGA TTACTGCAGCTACTCCAGCCCAGCCCCTTGCCAAGGTATGA < 41bp 1 0.27080808845611 1 0.106467097997665 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32944227 chr6:32944218 nonsynonymous SNV 0.933 1 12 hm5C_associated_SNPs_16431 0 0 1 0 1 Cytosol 1 0.500231642776891 1 0.999536714446218 hm5C_site_17973 DeepMRMD:1;iRNA_m5C:0.999536714446218 17974 chr8 9413781 9413781 1 + C T BLCA 9413797 + 9413777 9413817 41 ACTTCATCTGCCGCTGGGGTCGCTCCCAACCCAGCCGGCAG ACTTTATCTGCCGCTGGGGTCGCTCCCAACCCAGCCGGCAG < 41bp 1 0.19119206752845 1 0.196284681558609 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9413797 chr8:9413781 nonsynonymous SNV 0.498 0 5 hm5C_associated_SNPs_16433 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17974 DeepMRMD:1;iRNA_m5C:0.999536712157815 17975 chr1 46073347 46073347 1 + G C BLCA 46073334 + 46073314 46073354 41 CAGTTTCTGGAACTGATGTCCAAGAAGAGTGCAGAGAAAAA CAGTTTCTGGAACTGATGTCCAAGAAGAGTGCACAGAAAAA < 41bp 1 0.657051778104116 1 0.761796176433563 experiment 0.685896443791767 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46073334 chr1:46073347 nonsynonymous SNV 0.774 2 34 hm5C_associated_SNPs_16434 0 0 1 0 0 Nucleus 1 0.500234560990051 0.476407647132874 0.999530878019897 hm5C_site_17975 DeepMRMD:0.476407647132874;iRNA_m5C:0.999530878019897 17976 chr5 61778976 61778976 1 + C G BLCA 61778983 + 61778963 61779003 41 TACTCCTCTAATTCAGAGATCACTGGAATTTTCTGTAAGCT TACTCCTCTAATTGAGAGATCACTGGAATTTTCTGTAAGCT < 41bp 1 0.136916421511324 1 0.179348737001419 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IPO11 ENSG00000086200 CDS Human protein_coding chr5:61778983 chr5:61778976 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_16435 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_17976 DeepMRMD:1;iRNA_m5C:0.999536712157814 17977 chr19 6177330 6177330 1 + G T BLCA 6177336 + 6177316 6177356 41 CACTCAGCCATATTGCAGCACAGATGATGGACATCTGGGTA CACTCAGCCATATTTCAGCACAGATGATGGACATCTGGGTA < 41bp 1 0.401558342482828 1 0.0635327398777008 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6177336 chr19:6177330 nonsynonymous SNV 0.582 0 15 hm5C_associated_SNPs_16436 0 0 0 0 2 exosome 1 0.500231643710553 1 0.999536712578895 hm5C_site_17977 DeepMRMD:1;iRNA_m5C:0.999536712578895 17978 chr6 149730837 149730837 1 + G C BLCA 149730822 + 149730802 149730842 41 AACCATCCAGCCTTAATTCGCTGTGAACAGTGTGAGATGCC AACCATCCAGCCTTAATTCGCTGTGAACAGTGTGACATGCC < 41bp 1 0.414313561872002 1 0.197544872760773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TAB2 ENSG00000055208 CDS Human protein_coding chr6:149730822 chr6:149730837 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_16439 0 0 1 1 0 Cytosol 1 0.500231718244159 1 0.999536563511681 hm5C_site_17978 DeepMRMD:1;iRNA_m5C:0.999536563511681 17979 chr5 149006694 149006694 1 + C G BLCA 149006692 + 149006672 149006712 41 GCTCTCCTGAGCAGGTATGGCCCTGGGAAGCTGTACCAGGT GCTCTCCTGAGCAGGTATGGCCGTGGGAAGCTGTACCAGGT < 41bp 1 0.262032114099414 1 0.565405964851379 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149006692 chr5:149006694 nonsynonymous SNV 0.057 3 23 hm5C_associated_SNPs_16440 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921095 0.869188070297242 0.99953671215781 hm5C_site_17979 DeepMRMD:0.869188070297242;iRNA_m5C:0.99953671215781 17980 chr15 89835963 89835963 1 + G C BLCA 89835978 + 89835958 89835998 41 TATAAGAATACAGTCATACCCTTACAGCAGGGAGAGGAGGA TATAACAATACAGTCATACCCTTACAGCAGGGAGAGGAGGA < 41bp 1 0.111742717120262 1 0.079216331243515 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout FANCI ENSG00000140525 CDS Human protein_coding chr15:89835978 chr15:89835963 nonsynonymous SNV 0.985 3 6 hm5C_associated_SNPs_16441 0 0 1 0 1 Nucleus 1 0.50023164386132 1 0.999536712277359 hm5C_site_17980 DeepMRMD:1;iRNA_m5C:0.999536712277359 17981 chr1 227923158 227923158 1 + G A BLCA 227923153 + 227923133 227923173 41 TTCACTGCGCAGGCGCCGAGCGGCCGAGGCGCCGCGGTCGG TTCACTGCGCAGGCGCCGAGCGGCCAAGGCGCCGCGGTCGG < 41bp 1 0.61678542095653 1 0.733982145786285 experiment 0.76642915808694 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227923153 chr1:227923158 synonymous SNV . 0 26 hm5C_associated_SNPs_16442 0 0 1 0 1 Ribosome 1 0.500231643921092 0.53203570842743 0.999536712157815 hm5C_site_17981 DeepMRMD:0.53203570842743;iRNA_m5C:0.999536712157815 17982 chr14 73576063 73576063 1 + C T BLCA 73576058 + 73576038 73576078 41 TCACTTTTACAGAGGAAGTGCTCTTCAGAAAAGGTTGCGTG TCACTTTTACAGAGGAAGTGCTCTTTAGAAAAGGTTGCGTG < 41bp 1 0.1452712273047 1 0.140395641326904 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576058 chr14:73576063 stopgain 0.999 1 26 hm5C_associated_SNPs_16443 0 0 1 0 1 Nucleus 1 0.50023164392064 1 0.999536712158719 hm5C_site_17982 DeepMRMD:1;iRNA_m5C:0.999536712158719 17983 chr14 73576063 73576063 1 + C T BLCA 73576060 + 73576040 73576080 41 ACTTTTACAGAGGAAGTGCTCTTCAGAAAAGGTTGCGTGAT ACTTTTACAGAGGAAGTGCTCTTTAGAAAAGGTTGCGTGAT < 41bp 1 0.374607969083021 1 0.158947646617889 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576060 chr14:73576063 stopgain 0.999 1 24 hm5C_associated_SNPs_16444 0 0 1 0 1 Nucleus 1 0.500153295718586 1 0.999693408562828 hm5C_site_17983 DeepMRMD:1;iRNA_m5C:0.999693408562828 17984 chr14 73576063 73576063 1 + C T BLCA 73576075 + 73576055 73576095 41 GTGCTCTTCAGAAAAGGTTGCGTGATAGAGAAAAGGAAATG GTGCTCTTTAGAAAAGGTTGCGTGATAGAGAAAAGGAAATG < 41bp 1 0.451507610844797 1 0.298324644565582 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576075 chr14:73576063 stopgain 0.999 1 9 hm5C_associated_SNPs_16445 0 0 1 0 1 Nucleus 1 0.500231643917716 1 0.999536712164569 hm5C_site_17984 DeepMRMD:1;iRNA_m5C:0.999536712164569 17985 chr20 34776319 34776319 1 + C T BLCA 34776322 + 34776302 34776342 41 TGTGCCAATGGCCTGCTCATCTACCGGGACCGGCTGAGAAT TGTGCCAATGGCCTGCTTATCTACCGGGACCGGCTGAGAAT < 41bp 1 0.467658614557791 1 0.30712503194809 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPB41L1 ENSG00000088367 CDS Human protein_coding chr20:34776322 chr20:34776319 synonymous SNV . 0 18 hm5C_associated_SNPs_16446 0 0 1 0 1 Cytoplasm 1 0.5002316439211 1 0.9995367121578 hm5C_site_17985 DeepMRMD:1;iRNA_m5C:0.9995367121578 17986 chr3 49049462 49049462 1 + G A BLCA 49049444 + 49049424 49049464 41 CCCTGCACAGACAGGTGCACCCTCTCTTCAGCCTGCCTGAT CCCTGCACAGACAGGTGCACCCTCTCTTCAGCCTGCCTAAT < 41bp 1 0.0465160552582643 1 0.0380955040454865 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR6 ENSG00000178252 CDS Human protein_coding chr3:49049444 chr3:49049462 synonymous SNV . 0 39 hm5C_associated_SNPs_16449 0 0 1 0 1 Nucleus 1 0.500231644995887 1 0.999536710008227 hm5C_site_17986 DeepMRMD:1;iRNA_m5C:0.999536710008227 17987 chr6 44219877 44219877 1 + C G BLCA 44219869 + 44219849 44219889 41 AAGGAATTTGATGGGAAGAGCCTGGTCTCAGTTACCAAGGA AAGGAATTTGATGGGAAGAGCCTGGTCTGAGTTACCAAGGA < 41bp 1 0.31438923274445 1 0.330811530351639 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219869 chr6:44219877 stopgain 0.994 0 29 hm5C_associated_SNPs_16450 0 0 1 0 0 Nucleus 1 0.500231643921795 1 0.999536712156411 hm5C_site_17987 DeepMRMD:1;iRNA_m5C:0.999536712156411 17988 chr6 44219877 44219877 1 + C G BLCA 44219883 + 44219863 44219903 41 GAAGAGCCTGGTCTCAGTTACCAAGGAGGGTCTGGAGCTGC GAAGAGCCTGGTCTGAGTTACCAAGGAGGGTCTGGAGCTGC < 41bp 1 0.334896704598488 1 0.424097061157227 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219883 chr6:44219877 stopgain 0.994 0 15 hm5C_associated_SNPs_16452 0 0 1 0 0 Nucleus 1 0.500231648632807 1 0.999536702734385 hm5C_site_17988 DeepMRMD:1;iRNA_m5C:0.999536702734385 17989 chr17 57754433 57754433 1 + C G BLCA 57754417 + 57754397 57754437 41 ATCTACATAGACAGTAATAACAACCCGGAGAGATTTCTTCG ATCTACATAGACAGTAATAACAACCCGGAGAGATTTGTTCG < 41bp 1 0.256529799379343 1 0.182488173246384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57754417 chr17:57754433 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_16453 0 0 1 0 0 Nucleus 1 0.500231643963036 1 0.999536712073929 hm5C_site_17989 DeepMRMD:1;iRNA_m5C:0.999536712073929 17990 chr16 731803 731803 1 + G C BLCA 731817 + 731797 731837 41 CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA CTGGAACAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA < 41bp 1 0.357973725592637 1 0.150616079568863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STUB1 ENSG00000103266 CDS Human protein_coding chr16:731817 chr16:731803 nonsynonymous SNV 0.927 1 7 hm5C_associated_SNPs_16455 0 0 1 0 2 Endoplasmic reticulum 1 0.5002316405491 1 0.999536718901801 hm5C_site_17990 DeepMRMD:1;iRNA_m5C:0.999536718901801 17991 chr3 111667878 111667878 1 + G A BLCA 111667867 + 111667847 111667887 41 GTTTCCTGCTGATGCTGATGCTGTTGCCACTGAGCCTGCCA GTTTCCTGCTGATGCTGATGCTGTTGCCACTAAGCCTGCCA < 41bp 1 0.263185142093561 1 0.116549760103226 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111667867 chr3:111667878 nonsynonymous SNV 0.990 0 32 hm5C_associated_SNPs_16456 0 0 1 0 2 cytosol 1 0.500231531664226 1 0.999536936671548 hm5C_site_17991 DeepMRMD:1;iRNA_m5C:0.999536936671548 17992 chr19 32973094 32973094 1 + G C BLCA 32973083 + 32973063 32973103 41 AACCTGCCTCCCTACGTGGCCTACTTCACCAGAGTGTTCCA AACCTGCCTCCCTACGTGGCCTACTTCACCACAGTGTTCCA < 41bp 1 0.197545900969069 1 0.0783534944057465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32973083 chr19:32973094 nonsynonymous SNV 0.998 2 32 hm5C_associated_SNPs_16457 0 0 1 0 0 cytosol 1 0.500231643921044 1 0.999536712157912 hm5C_site_17992 DeepMRMD:1;iRNA_m5C:0.999536712157912 17993 chr7 55259449 55259449 1 + G A BLCA 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCACGA < 41bp 1 0.0773911785719062 1 0.353093475103378 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259449 nonsynonymous SNV 0.963 4 38 hm5C_associated_SNPs_16458 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17993 DeepMRMD:1;iRNA_m5C:0.999536712157815 17994 chr3 41278172 41278172 1 + T A BLCA 41278166 + 41278146 41278186 41 TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGCCAA TTCAGTTGAGCTGACCAGCTCTCTCTACAGAACAGAGCCAA < 41bp 1 0.337658771655328 1 0.475373774766922 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41278166 chr3:41278172 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_16460 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_17994 DeepMRMD:1;iRNA_m5C:0.999536712157815 17995 chr19 58198725 58198725 1 + G A BLCA 58198728 + 58198708 58198748 41 AGTTCACACTGGAGAAAGGCCTTATGAATGTGGCGAGTGCG AGTTCACACTGGAGAAAAGCCTTATGAATGTGGCGAGTGCG < 41bp 1 0.112745485996636 1 0.0393602848052979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF551 ENSG00000204519 CDS Human protein_coding chr19:58198728 chr19:58198725 nonsynonymous SNV 0.004 0 18 hm5C_associated_SNPs_16461 0 0 0 0 0 Cytosol 1 0.500231643921376 1 0.999536712157247 hm5C_site_17995 DeepMRMD:1;iRNA_m5C:0.999536712157247 17996 chr16 816647 816647 1 + C G BLCA 816657 + 816637 816677 41 CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCC CCACAAGGCTGCTCGGCGGCCCCTCCCACAGGTGGCCACCC < 41bp 1 0.0189268139243132 1 0.0798549950122833 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816657 chr16:816647 nonsynonymous SNV 0.006 0 11 hm5C_associated_SNPs_16462 0 0 0 0 1 nucleus 1 0.500231643427194 1 0.999536713145611 hm5C_site_17996 DeepMRMD:1;iRNA_m5C:0.999536713145611 17997 chr16 816647 816647 1 + C G BLCA 816658 + 816638 816678 41 CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCCT CACAAGGCTGCTCGGCGGCCCCTCCCACAGGTGGCCACCCT < 41bp 1 0.0121930198292398 1 0.0617772936820984 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816658 chr16:816647 nonsynonymous SNV 0.006 0 10 hm5C_associated_SNPs_16463 0 0 0 0 1 nucleus 1 0.500231643923823 1 0.999536712152355 hm5C_site_17997 DeepMRMD:1;iRNA_m5C:0.999536712152355 17998 chr9 137328331 137328331 1 + C G BLCA 137328316 + 137328296 137328336 41 AGACCTGTTCCCTGCAGGTTCGCTAAGCTCTTGCTCCGCCT AGACCTGTTCCCTGCAGGTTCGCTAAGCTCTTGCTGCGCCT < 41bp 1 0.368240682641574 1 0.3035868704319 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RXRA ENSG00000186350 CDS Human protein_coding chr9:137328316 chr9:137328331 synonymous SNV . 0 36 hm5C_associated_SNPs_16464 0 0 1 0 1 Cytosol 1 0.50023164384972 1 0.99953671230056 hm5C_site_17998 DeepMRMD:1;iRNA_m5C:0.99953671230056 17999 chrX 55033806 55033806 1 + C T BLCA 55033813 + 55033793 55033833 41 GTGTGCCAGGCCCCGGGGTCCTCCCACTGACCCCTCCTCCC GTGTGCCAGGCCCTGGGGTCCTCCCACTGACCCCTCCTCCC < 41bp 1 0.508446321686637 1 0.27681440114975 experiment 0.983107356626726 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APEX2 ENSG00000169188 CDS Human protein_coding chrX:55033813 chrX:55033806 nonsynonymous SNV 0.922 2 14 hm5C_associated_SNPs_16465 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_17999 DeepMRMD:1;iRNA_m5C:0.999536712157815 18000 chr19 13002715 13002715 1 + C T BLCA 13002695 + 13002675 13002715 41 CGCTGGTGCTGGAGGAGCAGCTGACCACAGATGAGATCCTC CGCTGGTGCTGGAGGAGCAGCTGACCACAGATGAGATCCTT < 41bp 1 0.42896833182414 1 0.771531581878662 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13002695 chr19:13002715 nonsynonymous SNV . 0 41 hm5C_associated_SNPs_16466 0 0 0 0 2 Ribosome 1 0.500231632982364 0.456936836242676 0.999536734035272 hm5C_site_18000 DeepMRMD:0.456936836242676;iRNA_m5C:0.999536734035272 18001 chr19 55898022 55898022 1 + G A BLCA 55898006 + 55897986 55898026 41 ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCGACGG ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCAACGG < 41bp 1 0.643621943989631 1 0.50504469871521 experiment 0.712756112020738 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898006 chr19:55898022 nonsynonymous SNV 0.925 2 37 hm5C_associated_SNPs_16467 0 0 1 0 2 Cytosol 1 0.50023164376068 0.98991060256958 0.999536712478641 hm5C_site_18001 DeepMRMD:0.98991060256958;iRNA_m5C:0.999536712478641 18002 chr19 55898022 55898022 1 + G A BLCA 55898017 + 55897997 55898037 41 GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG GACTGTGGGCGTGGAGCCGGCAGCCAACGGCAAAGGTGTCG < 41bp 1 0.422193458434909 1 0.293293356895447 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898017 chr19:55898022 nonsynonymous SNV 0.925 2 26 hm5C_associated_SNPs_16468 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_18002 DeepMRMD:1;iRNA_m5C:0.999536712157815 18003 chr1 183096378 183096378 1 + G A BLCA 183096385 + 183096365 183096405 41 TGACTGTCATCCTGAGGGATCTCTTTCACTTCAGTGCAAAG TGACTGTCATCCTAAGGGATCTCTTTCACTTCAGTGCAAAG < 41bp 1 0.0351619045755962 1 0.046731024980545 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183096385 chr1:183096378 nonsynonymous SNV 0.990 2 14 hm5C_associated_SNPs_16469 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18003 DeepMRMD:1;iRNA_m5C:0.999536712157815 18004 chr1 183096378 183096378 1 + G A BLCA 183096391 + 183096371 183096411 41 TCATCCTGAGGGATCTCTTTCACTTCAGTGCAAAGATGATG TCATCCTAAGGGATCTCTTTCACTTCAGTGCAAAGATGATG < 41bp 1 0.0731117985241779 1 0.111715108156204 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183096391 chr1:183096378 nonsynonymous SNV 0.990 2 8 hm5C_associated_SNPs_16470 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18004 DeepMRMD:1;iRNA_m5C:0.999536712157815 18005 chr20 39797452 39797452 1 + G A BLCA 39797451 + 39797431 39797471 41 TACAAGGCCCAGAGGGAGGACGAGCTGACCTTCATCAAGAG TACAAGGCCCAGAGGGAGGACAAGCTGACCTTCATCAAGAG < 41bp 1 0.234175798378969 1 0.461054086685181 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39797451 chr20:39797452 nonsynonymous SNV 0.868 4 22 hm5C_associated_SNPs_16471 0 0 1 0 1 Cytosol 1 0.500231644926313 1 0.999536710147374 hm5C_site_18005 DeepMRMD:1;iRNA_m5C:0.999536710147374 18006 chr8 37554677 37554677 1 + G A BLCA 37554680 + 37554660 37554700 41 CAGCTGGACGCCAAGAAGAGCCCCTTGGCGCTGCTGGCTCA CAGCTGGACGCCAAGAAAAGCCCCTTGGCGCTGCTGGCTCA < 41bp 1 0.219685221406368 1 0.118014276027679 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF703 ENSG00000183779 CDS Human protein_coding chr8:37554680 chr8:37554677 synonymous SNV . 0 18 hm5C_associated_SNPs_16472 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18006 DeepMRMD:1;iRNA_m5C:0.999536712157815 18007 chr19 11472107 11472107 1 + C T BLCA 11472113 + 11472093 11472133 41 GTGGCCGCCGCGCGCCGCGCCTTCCCCTGCAAGGATGCGGC GTGGCCGCCGCGCGTCGCGCCTTCCCCTGCAAGGATGCGGC < 41bp 1 0.131683978541219 1 0.326326817274094 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11472113 chr19:11472107 synonymous SNV . 0 15 hm5C_associated_SNPs_16473 0 0 0 0 1 exosome 1 0.50023164637457 1 0.999536707250861 hm5C_site_18007 DeepMRMD:1;iRNA_m5C:0.999536707250861 18008 chr8 145535411 145535411 1 + C G BLCA 145535406 + 145535386 145535426 41 GCCCCCTCCCCAGCCTACAGCAGCTCCAGCCTCTACGCCCC GCCCCCTCCCCAGCCTACAGCAGCTGCAGCCTCTACGCCCC < 41bp 1 0.474986614734199 1 0.368005990982056 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535406 chr8:145535411 nonsynonymous SNV 0.993 2 26 hm5C_associated_SNPs_16474 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18008 DeepMRMD:1;iRNA_m5C:0.999536712157815 18009 chr19 58772798 58772798 1 + G A BLCA 58772785 + 58772765 58772805 41 TCAGTGAAGAAAAGTGATGACTGTAAGGATTATGGAAACCT TCAGTGAAGAAAAGTGATGACTGTAAGGATTATAGAAACCT < 41bp 1 0.410540907534583 1 0.177733987569809 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58772785 chr19:58772798 nonsynonymous SNV 0.075 1 34 hm5C_associated_SNPs_16475 0 0 1 0 0 chromatin 1 0.500231620259549 1 0.999536759480901 hm5C_site_18009 DeepMRMD:1;iRNA_m5C:0.999536759480901 18010 chr7 158672547 158672547 1 + C T BLCA 158672551 + 158672531 158672571 41 AAAAGTAATTCATTCTCTGACAAAGGGGAAGAAAGACATAA AAAAGTAATTCATTCTTTGACAAAGGGGAAGAAAGACATAA < 41bp 1 0.292473586291827 1 0.443084418773651 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR60 ENSG00000126870 CDS Human protein_coding chr7:158672551 chr7:158672547 nonsynonymous SNV 0.012 0 17 hm5C_associated_SNPs_16476 0 0 1 1 0 Nucleus 1 0.500231643839346 1 0.999536712321307 hm5C_site_18010 DeepMRMD:1;iRNA_m5C:0.999536712321307 18011 chr19 58772799 58772799 1 + G T BLCA 58772785 + 58772765 58772805 41 TCAGTGAAGAAAAGTGATGACTGTAAGGATTATGGAAACCT TCAGTGAAGAAAAGTGATGACTGTAAGGATTATGTAAACCT < 41bp 1 0.438479779698879 1 0.136871218681335 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58772785 chr19:58772799 nonsynonymous SNV 0.092 3 35 hm5C_associated_SNPs_16477 0 0 1 0 0 chromatin 1 0.500217011840682 1 0.999565976318636 hm5C_site_18011 DeepMRMD:1;iRNA_m5C:0.999565976318636 18012 chr12 6976718 6976718 1 + C T BLCA 6976702 + 6976682 6976722 41 GCCGCGACTGCGCGCAGACACTGACCTTCAGCGCCTCGGCT GCCGCGACTGCGCGCAGACACTGACCTTCAGCGCCTTGGCT < 41bp 1 0.468942818690623 1 0.0396610200405121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6976702 chr12:6976718 synonymous SNV . 0 37 hm5C_associated_SNPs_16478 0 0 1 0 0 Ribosome 1 0.500231643714434 1 0.999536712571132 hm5C_site_18012 DeepMRMD:1;iRNA_m5C:0.999536712571132 18013 chr5 50058990 50058990 1 + T C BLCA 50059003 + 50058983 50059023 41 TGAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA TGAACTACGATGGGGAACTGCACAAGCACCCACAACTGGAA < 41bp 1 0.65791754297852 1 0.393859803676605 experiment 0.68416491404296 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PARP8 ENSG00000151883 CDS Human protein_coding chr5:50059003 chr5:50058990 synonymous SNV . 0 8 hm5C_associated_SNPs_16479 0 0 0 0 2 Nucleus 1 0.500231643921122 1 0.999536712157757 hm5C_site_18013 DeepMRMD:1;iRNA_m5C:0.999536712157757 18014 chr14 59014515 59014515 1 + A T BLCA 59014534 + 59014514 59014554 41 CACTCTCCGCTTCACAGATGCCCCCTGCCAAGATGTCAGTG CTCTCTCCGCTTCACAGATGCCCCCTGCCAAGATGTCAGTG < 41bp 1 0.13203350133127 1 0.031034916639328 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0586 ENSG00000100578 CDS Human protein_coding chr14:59014534 chr14:59014515 nonsynonymous SNV 0.002 1 2 hm5C_associated_SNPs_16480 0 0 0 0 1 Nucleus 1 0.500231644818712 1 0.999536710362575 hm5C_site_18014 DeepMRMD:1;iRNA_m5C:0.999536710362575 18015 chr16 28842303 28842303 1 + A G BLCA 28842286 + 28842266 28842306 41 AAAAAAAAACCAAACAGGCCCTTCCCGCATGTCCCCAAAGG AAAAAAAAACCAAACAGGCCCTTCCCGCATGTCCCCAGAGG < 41bp 1 0.0276171490316376 1 0.132897883653641 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28842286 chr16:28842303 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_16481 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18015 DeepMRMD:1;iRNA_m5C:0.999536712157815 18016 chr3 42701094 42701094 1 + G T BLCA 42701099 + 42701079 42701119 41 CCTCTGCATCGGCCCGAGGGCCGCCAGCCACTGATGGGCTG CCTCTGCATCGGCCCTAGGGCCGCCAGCCACTGATGGGCTG < 41bp 1 0.141146889418242 1 0.135843992233276 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701099 chr3:42701094 nonsynonymous SNV 0.011 1 16 hm5C_associated_SNPs_16482 0 0 0 0 0 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_18016 DeepMRMD:1;iRNA_m5C:0.999536712157815 18017 chr3 42701094 42701094 1 + G T BLCA 42701100 + 42701080 42701120 41 CTCTGCATCGGCCCGAGGGCCGCCAGCCACTGATGGGCTGG CTCTGCATCGGCCCTAGGGCCGCCAGCCACTGATGGGCTGG < 41bp 1 0.632164590532731 1 0.322445392608643 experiment 0.735670818934539 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701100 chr3:42701094 nonsynonymous SNV 0.011 1 15 hm5C_associated_SNPs_16483 0 0 0 0 0 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_18017 DeepMRMD:1;iRNA_m5C:0.999536712157815 18018 chr3 42701094 42701094 1 + G T BLCA 42701102 + 42701082 42701122 41 CTGCATCGGCCCGAGGGCCGCCAGCCACTGATGGGCTGGGG CTGCATCGGCCCTAGGGCCGCCAGCCACTGATGGGCTGGGG < 41bp 1 0.116043322783472 1 0.608034014701843 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701102 chr3:42701094 nonsynonymous SNV 0.011 1 13 hm5C_associated_SNPs_16484 0 0 0 0 0 membrane 1 0.500231643921092 0.783931970596314 0.999536712157815 hm5C_site_18018 DeepMRMD:0.783931970596314;iRNA_m5C:0.999536712157815 18019 chr3 42701094 42701094 1 + G T BLCA 42701103 + 42701083 42701123 41 TGCATCGGCCCGAGGGCCGCCAGCCACTGATGGGCTGGGGG TGCATCGGCCCTAGGGCCGCCAGCCACTGATGGGCTGGGGG < 41bp 1 0.126536137573929 1 0.523931264877319 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701103 chr3:42701094 nonsynonymous SNV 0.011 1 12 hm5C_associated_SNPs_16485 0 0 0 0 0 membrane 1 0.500231643921092 0.952137470245362 0.999536712157815 hm5C_site_18019 DeepMRMD:0.952137470245362;iRNA_m5C:0.999536712157815 18020 chr3 42701094 42701094 1 + G T BLCA 42701106 + 42701086 42701126 41 ATCGGCCCGAGGGCCGCCAGCCACTGATGGGCTGGGGGCCA ATCGGCCCTAGGGCCGCCAGCCACTGATGGGCTGGGGGCCA < 41bp 1 0.158472030910782 1 0.369959831237793 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701106 chr3:42701094 nonsynonymous SNV 0.011 1 9 hm5C_associated_SNPs_16486 0 0 0 0 0 membrane 1 0.5002316439211 1 0.999536712157801 hm5C_site_18020 DeepMRMD:1;iRNA_m5C:0.999536712157801 18021 chr3 42701094 42701094 1 + G T BLCA 42701107 + 42701087 42701127 41 TCGGCCCGAGGGCCGCCAGCCACTGATGGGCTGGGGGCCAA TCGGCCCTAGGGCCGCCAGCCACTGATGGGCTGGGGGCCAA < 41bp 1 0.451042008010697 1 0.435936123132706 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701107 chr3:42701094 nonsynonymous SNV 0.011 1 8 hm5C_associated_SNPs_16487 0 0 0 0 0 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_18021 DeepMRMD:1;iRNA_m5C:0.999536712157815 18022 chr20 31021631 31021631 1 + G A BLCA 31021621 + 31021601 31021641 41 TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATCGTCAGTC TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAAATCGTCAGTC < 41bp 1 0.170137440490904 1 0.190824210643768 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021621 chr20:31021631 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_16488 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18022 DeepMRMD:1;iRNA_m5C:0.999536712157815 18023 chr7 94917928 94917928 1 + T C BLCA 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCCCACTGGTTA < 41bp 1 0.543800930280472 1 0.128427982330322 experiment 0.912398139439055 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917928 synonymous SNV . 0 32 hm5C_associated_SNPs_16490 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18023 DeepMRMD:1;iRNA_m5C:0.999536712157815 18024 chr16 24826603 24826603 1 + C G BLCA 24826598 + 24826578 24826618 41 CCACGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTG CCACGTGCCAAATCGCCTAACGGCTGTAGCAGTGTTAATTG < 41bp 1 0.539973458720879 1 0.111861914396286 experiment 0.920053082558241 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24826598 chr16:24826603 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_16491 0 0 1 0 1 Nucleus 1 0.500231644769486 1 0.999536710461029 hm5C_site_18024 DeepMRMD:1;iRNA_m5C:0.999536710461029 18025 chr15 63128203 63128203 1 + C G BLCA 63128184 + 63128164 63128204 41 GGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCTTCCA GGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCTTCGA < 41bp 1 0.0624893350253429 1 0.361660301685333 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63128184 chr15:63128203 synonymous SNV . 0 40 hm5C_associated_SNPs_16492 0 0 0 0 1 Nucleus 1 0.500231585111524 1 0.999536829776952 hm5C_site_18025 DeepMRMD:1;iRNA_m5C:0.999536829776952 18026 chr12 57560824 57560824 1 + C T BLCA 57560805 + 57560785 57560825 41 TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTCG TGGATGACGACTGTGGGGACCGCTCTGATGAGTCTGCTTTG < 41bp 1 0.0576985051078638 1 0.197162836790085 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57560805 chr12:57560824 nonsynonymous SNV 0.360 4 40 hm5C_associated_SNPs_16493 0 0 1 0 1 Exosome 1 0.500240308617174 1 0.999519382765652 hm5C_site_18026 DeepMRMD:1;iRNA_m5C:0.999519382765652 18027 chr3 33906752 33906752 1 + C T BLCA 33906745 + 33906725 33906765 41 TTTCTTATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTC TTTCTTATAGCCTACTAAGCCCCAGCCTCCAGCCAGGCCTC < 41bp 1 0.363862136489389 1 0.0805998146533966 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906745 chr3:33906752 synonymous SNV . 0 28 hm5C_associated_SNPs_16494 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18027 DeepMRMD:1;iRNA_m5C:0.999536712157815 18028 chr3 33906752 33906752 1 + C T BLCA 33906746 + 33906726 33906766 41 TTCTTATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCC TTCTTATAGCCTACTAAGCCCCAGCCTCCAGCCAGGCCTCC < 41bp 1 0.128889274876816 1 0.0745579600334167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906746 chr3:33906752 synonymous SNV . 0 27 hm5C_associated_SNPs_16495 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18028 DeepMRMD:1;iRNA_m5C:0.999536712157815 18029 chr3 33906752 33906752 1 + C T BLCA 33906747 + 33906727 33906767 41 TCTTATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCA TCTTATAGCCTACTAAGCCCCAGCCTCCAGCCAGGCCTCCA < 41bp 1 0.426587350160494 1 0.0962844491004944 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906747 chr3:33906752 synonymous SNV . 0 26 hm5C_associated_SNPs_16496 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18029 DeepMRMD:1;iRNA_m5C:0.999536712157815 18030 chr3 33906752 33906752 1 + C T BLCA 33906750 + 33906730 33906770 41 TATAGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCA TATAGCCTACTAAGCCCCAGCCTCCAGCCAGGCCTCCACCA < 41bp 1 0.047846003722099 1 0.543583333492279 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906750 chr3:33906752 synonymous SNV . 0 23 hm5C_associated_SNPs_16497 0 0 1 0 1 Nucleus 1 0.500231643921092 0.912833333015442 0.999536712157815 hm5C_site_18030 DeepMRMD:0.912833333015442;iRNA_m5C:0.999536712157815 18031 chr3 33906752 33906752 1 + C T BLCA 33906753 + 33906733 33906773 41 AGCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACCT AGCCTACTAAGCCCCAGCCTCCAGCCAGGCCTCCACCACCT < 41bp 1 0.237106472183631 1 0.312452852725983 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906753 chr3:33906752 synonymous SNV . 0 20 hm5C_associated_SNPs_16498 0 0 1 0 1 Nucleus 1 0.500232547705563 1 0.999534904588874 hm5C_site_18031 DeepMRMD:1;iRNA_m5C:0.999534904588874 18032 chr3 33906752 33906752 1 + C T BLCA 33906754 + 33906734 33906774 41 GCCTACTAAGCCCCAGCCCCCAGCCAGGCCTCCACCACCTG GCCTACTAAGCCCCAGCCTCCAGCCAGGCCTCCACCACCTG < 41bp 1 0.40126800281876 1 0.211411476135254 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906754 chr3:33906752 synonymous SNV . 0 19 hm5C_associated_SNPs_16499 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18032 DeepMRMD:1;iRNA_m5C:0.999536712157815 18033 chr1 39908201 39908201 1 + G T BLCA 39908204 + 39908184 39908224 41 AGAGACCAATAAGTGGAGACCCAAAAGTCATTGAAGTTGAG AGAGACCAATAAGTGGATACCCAAAAGTCATTGAAGTTGAG < 41bp 1 0.0734066899369625 1 0.252525329589844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39908204 chr1:39908201 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_16500 0 0 1 0 1 Endoplasmic reticulum 1 0.500231696470125 1 0.99953660705975 hm5C_site_18033 DeepMRMD:1;iRNA_m5C:0.99953660705975 18034 chr19 18255941 18255941 1 + G T BLCA 18255949 + 18255929 18255969 41 CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG CGGCCCCCCATCTTTATCCACAGCTCTGGCAAGAAGTACGG < 41bp 1 0.219166969054901 1 0.064570277929306 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255949 chr19:18255941 nonsynonymous SNV 0.997 3 13 hm5C_associated_SNPs_16501 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_18034 DeepMRMD:1;iRNA_m5C:0.999536712157816 18035 chr6 158449892 158449892 1 + C T BLCA 158449888 + 158449868 158449908 41 ATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA ATCACTGCCACTGACTTTTACCCTTTTCAGGAAGAGGCCAA < 41bp 1 0.0683232219067267 1 0.0477698445320129 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449888 chr6:158449892 nonsynonymous SNV 0.475 4 25 hm5C_associated_SNPs_16502 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18035 DeepMRMD:1;iRNA_m5C:0.999536712157815 18036 chr1 116932235 116932235 1 + C G BLCA 116932239 + 116932219 116932259 41 TCTTTCTTCATCCTTTCTCTCATCCTTGAGTACACCTGGCT TCTTTCTTCATCCTTTGTCTCATCCTTGAGTACACCTGGCT < 41bp 1 0.120700191486313 1 0.194050043821335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116932239 chr1:116932235 nonsynonymous SNV 0.982 5 17 hm5C_associated_SNPs_16503 0 0 1 0 1 Nucleus 1 0.500231642394684 1 0.999536715210631 hm5C_site_18036 DeepMRMD:1;iRNA_m5C:0.999536715210631 18037 chr19 12779345 12779345 1 + C T BLCA 12779329 + 12779309 12779349 41 ACTTGTTCTGTAGGGCAAGTCTCACATGAAGCTACTCATCA ACTTGTTCTGTAGGGCAAGTCTCACATGAAGCTACTTATCA < 41bp 1 0.256899415094869 1 0.0433531105518341 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WDR83OS ENSG00000105583 CDS Human protein_coding chr19:12779329 chr19:12779345 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16504 0 0 1 0 2 Ribosome 1 0.500231642999839 1 0.999536714000322 hm5C_site_18037 DeepMRMD:1;iRNA_m5C:0.999536714000322 18038 chr19 12779348 12779348 1 + C T BLCA 12779329 + 12779309 12779349 41 ACTTGTTCTGTAGGGCAAGTCTCACATGAAGCTACTCATCA ACTTGTTCTGTAGGGCAAGTCTCACATGAAGCTACTCATTA < 41bp 1 0.282600653739689 1 0.0442149937152863 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WDR83OS ENSG00000105583 CDS Human protein_coding chr19:12779329 chr19:12779348 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_16505 0 0 1 0 2 Ribosome 1 0.500231643925842 1 0.999536712148316 hm5C_site_18038 DeepMRMD:1;iRNA_m5C:0.999536712148316 18039 chr5 179137026 179137026 1 + G C BLCA 179137028 + 179137008 179137048 41 GCCAGATGCAGATCTGAAGACCTATTTTACTGATAAGAAAA GCCAGATGCAGATCTGAACACCTATTTTACTGATAAGAAAA < 41bp 1 0.0742359230952474 1 0.103849053382874 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179137028 chr5:179137026 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_16506 0 0 1 0 1 Nucleus 1 0.500231621972155 1 0.99953675605569 hm5C_site_18039 DeepMRMD:1;iRNA_m5C:0.99953675605569 18040 chr6 170632213 170632213 1 + A G BLCA 170632211 + 170632191 170632231 41 GCAGAAAGCTACCTGGTGTACAACATCATGAGCAGTGGAGA GCAGAAAGCTACCTGGTGTACAGCATCATGAGCAGTGGAGA < 41bp 1 0.677040193664259 1 0.116970360279083 experiment 0.645919612671483 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM120B ENSG00000112584 CDS Human protein_coding chr6:170632211 chr6:170632213 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_16507 0 0 1 0 1 Cytosol 1 0.500231636559556 1 0.999536726880888 hm5C_site_18040 DeepMRMD:1;iRNA_m5C:0.999536726880888 18041 chr17 7810488 7810488 1 + C G BLCA 7810504 + 7810484 7810524 41 ACCTCTTGAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGC ACCTGTTGAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGC < 41bp 1 0.529782436145595 1 0.420634567737579 experiment 0.94043512770881 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810504 chr17:7810488 nonsynonymous SNV 0.967 1 5 hm5C_associated_SNPs_16508 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18041 DeepMRMD:1;iRNA_m5C:0.999536712157815 18042 chr11 63996989 63996989 1 + G C BLCA 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTCAGTGGGGGACCCGAGGCCCACGAGTCTACAG < 41bp 1 0.426670672874052 1 0.859846830368042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63996989 synonymous SNV . 0 10 hm5C_associated_SNPs_16509 0 0 0 0 2 Ribosome 1 0.500239942693354 0.280306339263916 0.999520114613292 hm5C_site_18042 DeepMRMD:0.280306339263916;iRNA_m5C:0.999520114613292 18043 chr9 139734253 139734253 1 + G A BLCA 139734259 + 139734239 139734279 41 GCCTTCAGACTGAAGAATGACTCGGACCTCTTCGGGCTGGG GCCTTCAGACTGAAAAATGACTCGGACCTCTTCGGGCTGGG < 41bp 1 0.692331011339556 1 0.393238335847855 experiment 0.615337977320887 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734259 chr9:139734253 synonymous SNV . 0 15 hm5C_associated_SNPs_16510 0 0 1 0 1 chromatin 1 0.500231646142773 1 0.999536707714453 hm5C_site_18043 DeepMRMD:1;iRNA_m5C:0.999536707714453 18044 chr9 139734253 139734253 1 + G A BLCA 139734265 + 139734245 139734285 41 AGACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGA AGACTGAAAAATGACTCGGACCTCTTCGGGCTGGGGCTGGA < 41bp 1 0.0419058057008594 1 0.0440157353878021 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734265 chr9:139734253 synonymous SNV . 0 9 hm5C_associated_SNPs_16511 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18044 DeepMRMD:1;iRNA_m5C:0.999536712157815 18045 chr9 139734253 139734253 1 + G A BLCA 139734266 + 139734246 139734286 41 GACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAG GACTGAAAAATGACTCGGACCTCTTCGGGCTGGGGCTGGAG < 41bp 1 0.0969007925225546 1 0.126247972249985 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734266 chr9:139734253 synonymous SNV . 0 8 hm5C_associated_SNPs_16512 0 0 1 0 1 chromatin 1 0.500231643870007 1 0.999536712259986 hm5C_site_18045 DeepMRMD:1;iRNA_m5C:0.999536712259986 18046 chr9 139734253 139734253 1 + G A BLCA 139734271 + 139734251 139734291 41 AAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAGGAGGC AAAAATGACTCGGACCTCTTCGGGCTGGGGCTGGAGGAGGC < 41bp 1 0.685101540576394 1 0.91473263502121 experiment 0.629796918847212 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734271 chr9:139734253 synonymous SNV . 0 3 hm5C_associated_SNPs_16513 0 0 1 0 1 chromatin 1 0.500231643921524 0.17053472995758 0.999536712156952 hm5C_site_18046 DeepMRMD:0.17053472995758;iRNA_m5C:0.999536712156952 18047 chr11 108151820 108151820 1 + C T BLCA 108151830 + 108151810 108151850 41 GTAGCCCTATCTGCGAAAAACAGGCTTTGTTTGCCCTGTGT GTAGCCCTATTTGCGAAAAACAGGCTTTGTTTGCCCTGTGT < 41bp 1 0.333377324799937 1 0.456506729125977 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108151830 chr11:108151820 synonymous SNV . 0 11 hm5C_associated_SNPs_16514 0 0 1 0 2 Nucleus 1 0.500231643929205 1 0.99953671214159 hm5C_site_18047 DeepMRMD:1;iRNA_m5C:0.99953671214159 18048 chr12 105553817 105553817 1 + C T BLCA 105553821 + 105553801 105553841 41 GATCACACACGAAATTCTGCCGAAGGCACAGAATATTTCAA GATCACACACGAAATTTTGCCGAAGGCACAGAATATTTCAA < 41bp 1 0.478323771949485 1 0.493763327598572 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105553821 chr12:105553817 nonsynonymous SNV 0.997 1 17 hm5C_associated_SNPs_16515 0 0 1 0 1 unknown 1 0.500234930922311 1 0.999530138155379 hm5C_site_18048 DeepMRMD:1;iRNA_m5C:0.999530138155379 18049 chr1 154988787 154988787 1 + G C BLCA 154988768 + 154988748 154988788 41 TCATGCCCGCACTGCCCAGCCCGCTTCCTGCACAGCTACGA TCATGCCCGCACTGCCCAGCCCGCTTCCTGCACAGCTACCA < 41bp 1 0.204698578179876 1 0.0983605980873108 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154988768 chr1:154988787 nonsynonymous SNV 0.982 2 40 hm5C_associated_SNPs_16516 0 0 1 0 1 chromatin 1 0.500236984190846 1 0.999526031618309 hm5C_site_18049 DeepMRMD:1;iRNA_m5C:0.999526031618309 18050 chr6 42854069 42854069 1 + C T BLCA 42854083 + 42854063 42854103 41 AGATCTCATGGTTCTTGTGCCCTTTCCACCTCTCAGTGGCC AGATCTTATGGTTCTTGTGCCCTTTCCACCTCTCAGTGGCC < 41bp 1 0.0125533471282928 1 0.0326441526412964 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42854083 chr6:42854069 nonsynonymous SNV 0.273 1 7 hm5C_associated_SNPs_16517 0 0 1 0 1 Ribosome 1 0.500231620430679 1 0.999536759138641 hm5C_site_18050 DeepMRMD:1;iRNA_m5C:0.999536759138641 18051 chr3 20019815 20019815 1 + A C BLCA 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAGTCCTCTGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.486593836889217 1 0.0920608043670654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019815 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_16518 0 0 1 2 2 Ribosome 1 0.500231643979771 1 0.999536712040457 hm5C_site_18051 DeepMRMD:1;iRNA_m5C:0.999536712040457 18052 chr22 32889255 32889255 1 + G A BLCA 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAGGTTTTTATATCTACGTGATTTTCGAGGTGAT < 41bp 1 0.45685197556668 1 0.432032644748688 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889255 synonymous SNV . 0 23 hm5C_associated_SNPs_16519 0 0 1 0 1 chromatin 1 0.500231645121015 1 0.999536709757969 hm5C_site_18052 DeepMRMD:1;iRNA_m5C:0.999536709757969 18053 chr20 39986944 39986944 1 + C T BLCA 39986960 + 39986940 39986980 41 GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA GTTTTTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA < 41bp 1 0.0132515441849418 1 0.113916754722595 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986960 chr20:39986944 synonymous SNV . 0 5 hm5C_associated_SNPs_16520 0 0 1 0 2 Nucleus 1 0.500231643921099 1 0.999536712157802 hm5C_site_18053 DeepMRMD:1;iRNA_m5C:0.999536712157802 18054 chr7 69583197 69583197 1 + G T BLCA 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTCCACCGGAGCATCTCTCGGGA < 41bp 1 0.126297411466019 1 0.162234753370285 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583197 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_16521 0 0 0 0 2 Nucleus 1 0.500231643880158 1 0.999536712239683 hm5C_site_18054 DeepMRMD:1;iRNA_m5C:0.999536712239683 18055 chr5 140741617 140741617 1 + C T BLCA 140741612 + 140741592 140741632 41 TGCCTTGGGCGACAGGGACGCGGCCCGCCAGCGCCTGCTGG TGCCTTGGGCGACAGGGACGCGGCCTGCCAGCGCCTGCTGG < 41bp 1 0.462183043262058 1 0.743887186050415 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741612 chr5:140741617 nonsynonymous SNV 0.970 3 26 hm5C_associated_SNPs_16522 0 0 0 0 0 exosome 1 0.500231549176089 0.51222562789917 0.999536901647822 hm5C_site_18055 DeepMRMD:0.51222562789917;iRNA_m5C:0.999536901647822 18056 chr1 112305380 112305380 1 + C T BLCA 112305377 + 112305357 112305397 41 TGGATTGGGAGACATACATGCATCGGATTGGGAGAGCTGGC TGGATTGGGAGACATACATGCATTGGATTGGGAGAGCTGGC < 41bp 1 0.318433680758363 1 0.109291911125183 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305377 chr1:112305380 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_16523 0 0 1 0 2 Ribosome 1 0.500231640947692 1 0.999536718104615 hm5C_site_18056 DeepMRMD:1;iRNA_m5C:0.999536718104615 18057 chr16 84695566 84695566 1 + G T BLCA 84695562 + 84695542 84695582 41 GGCGGCTACAGCTGGGAGAACACTGCCTTCTCCAAGACCGT GGCGGCTACAGCTGGGAGAACACTTCCTTCTCCAAGACCGT < 41bp 1 0.108771647720024 1 0.144411772489548 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84695562 chr16:84695566 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_16524 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18057 DeepMRMD:1;iRNA_m5C:0.999536712157815 18058 chr1 46073334 46073334 1 + C A BLCA 46073326 + 46073306 46073346 41 AGAAAAATCAGTTTCTGGAACTGATGTCCAAGAAGAGTGCA AGAAAAATCAGTTTCTGGAACTGATGTCAAAGAAGAGTGCA < 41bp 1 0.452308676175922 1 0.0689040422439575 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46073326 chr1:46073334 nonsynonymous SNV 0.005 2 29 hm5C_associated_SNPs_16525 0 0 1 0 0 Nucleus 1 0.500231646457644 1 0.999536707084713 hm5C_site_18058 DeepMRMD:1;iRNA_m5C:0.999536707084713 18059 chr1 28099877 28099877 1 + G C BLCA 28099858 + 28099838 28099878 41 ACATGTACCGGAACCCGGGGCCCTCGGGGCCCCAGCTCCGG ACATGTACCGGAACCCGGGGCCCTCGGGGCCCCAGCTCCCG < 41bp 1 0.126859697222975 1 0.104141652584076 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STX12 ENSG00000117758 CDS Human protein_coding chr1:28099858 chr1:28099877 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_16526 0 0 1 0 1 Ribosome 1 0.500233607254375 1 0.999532785491249 hm5C_site_18059 DeepMRMD:1;iRNA_m5C:0.999532785491249 18060 chr1 28099877 28099877 1 + G C BLCA 28099859 + 28099839 28099879 41 CATGTACCGGAACCCGGGGCCCTCGGGGCCCCAGCTCCGGG CATGTACCGGAACCCGGGGCCCTCGGGGCCCCAGCTCCCGG < 41bp 1 0.310394929915421 1 0.378759652376175 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STX12 ENSG00000117758 CDS Human protein_coding chr1:28099859 chr1:28099877 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_16527 0 0 1 0 1 Ribosome 1 0.500231643921013 1 0.999536712157973 hm5C_site_18060 DeepMRMD:1;iRNA_m5C:0.999536712157973 18061 chr1 28099877 28099877 1 + G C BLCA 28099867 + 28099847 28099887 41 GGAACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGC GGAACCCGGGGCCCTCGGGGCCCCAGCTCCCGGACTTCAGC < 41bp 1 0.537526086586728 1 0.274555057287216 experiment 0.924947826826544 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099867 chr1:28099877 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_16528 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18061 DeepMRMD:1;iRNA_m5C:0.999536712157815 18062 chr1 28099877 28099877 1 + G C BLCA 28099868 + 28099848 28099888 41 GAACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGCA GAACCCGGGGCCCTCGGGGCCCCAGCTCCCGGACTTCAGCA < 41bp 1 0.412067730372136 1 0.372327089309692 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099868 chr1:28099877 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_16529 0 0 1 0 1 Ribosome 1 0.500231643933263 1 0.999536712133474 hm5C_site_18062 DeepMRMD:1;iRNA_m5C:0.999536712133474 18063 chr1 28099877 28099877 1 + G C BLCA 28099869 + 28099849 28099889 41 AACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGCAG AACCCGGGGCCCTCGGGGCCCCAGCTCCCGGACTTCAGCAG < 41bp 1 0.440502829730755 1 0.369233369827271 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099869 chr1:28099877 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_16530 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_18063 DeepMRMD:1;iRNA_m5C:0.999536712157818 18064 chr1 28099877 28099877 1 + G C BLCA 28099870 + 28099850 28099890 41 ACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGCAGC ACCCGGGGCCCTCGGGGCCCCAGCTCCCGGACTTCAGCAGC < 41bp 1 0.699923310103864 1 0.384572744369507 experiment 0.600153379792271 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099870 chr1:28099877 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_16531 0 0 1 0 1 Ribosome 1 0.500231643880456 1 0.999536712239089 hm5C_site_18064 DeepMRMD:1;iRNA_m5C:0.999536712239089 18065 chr17 7788214 7788214 1 + G C BLCA 7788211 + 7788191 7788231 41 GAGGAGGAAGAAGAGGGCGACGAGGAGGAGGAGGAGGAGGT GAGGAGGAAGAAGAGGGCGACGACGAGGAGGAGGAGGAGGT < 41bp 1 0.282026637638095 1 0.328117072582245 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHD3 ENSG00000170004 CDS Human protein_coding chr17:7788211 chr17:7788214 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_16532 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18065 DeepMRMD:1;iRNA_m5C:0.999536712157815 18066 chr21 30701862 30701862 1 + C G BLCA 30701844 + 30701824 30701864 41 ATGCACAACGGATAATTTCACTGTCTCGAAATGATTTTCAG ATGCACAACGGATAATTTCACTGTCTCGAAATGATTTTGAG < 41bp 1 0.15433166565686 1 0.200887799263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BACH1 ENSG00000156273 CDS Human protein_coding chr21:30701844 chr21:30701862 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_16533 0 0 1 0 1 Cytosol 1 0.500230820813731 1 0.999538358372538 hm5C_site_18066 DeepMRMD:1;iRNA_m5C:0.999538358372538 18067 chr7 98588176 98588176 1 + G T BLCA 98588173 + 98588153 98588193 41 CCACCCATCCAGTGGCTGGCCTGGATCCCACAGCTGCTCAC CCACCCATCCAGTGGCTGGCCTGTATCCCACAGCTGCTCAC < 41bp 1 0.377013632342089 1 0.231290489435196 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98588173 chr7:98588176 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_16534 0 0 1 0 2 Nucleus 1 0.500231637970006 1 0.999536724059987 hm5C_site_18067 DeepMRMD:1;iRNA_m5C:0.999536724059987 18068 chr18 56402448 56402448 1 + A T BLCA 56402451 + 56402431 56402471 41 AAGGTGTCAAGGAGCAGAAGCTTTTGAAATCCAGCATTCTG AAGGTGTCAAGGAGCAGTAGCTTTTGAAATCCAGCATTCTG < 41bp 1 0.0378836394479163 1 0.0233138799667358 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MALT1 ENSG00000172175 CDS Human protein_coding chr18:56402451 chr18:56402448 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_16535 0 0 1 0 1 Nucleus 1 0.500231643921229 1 0.999536712157543 hm5C_site_18068 DeepMRMD:1;iRNA_m5C:0.999536712157543 18069 chr19 50302947 50302947 1 + G A BLCA 50302928 + 50302908 50302948 41 GGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCGG GGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCAG < 41bp 1 0.667187669708576 1 0.790114998817444 experiment 0.665624660582848 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302928 chr19:50302947 nonsynonymous SNV 0.980 1 40 hm5C_associated_SNPs_16537 0 0 1 0 2 Ribosome 1 0.500231643921092 0.419770002365112 0.999536712157815 hm5C_site_18069 DeepMRMD:0.419770002365112;iRNA_m5C:0.999536712157815 18070 chr8 145535421 145535421 1 + C T BLCA 145535406 + 145535386 145535426 41 GCCCCCTCCCCAGCCTACAGCAGCTCCAGCCTCTACGCCCC GCCCCCTCCCCAGCCTACAGCAGCTCCAGCCTCTATGCCCC < 41bp 1 0.319677050871426 1 0.336969494819641 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535406 chr8:145535421 synonymous SNV . 0 36 hm5C_associated_SNPs_16538 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18070 DeepMRMD:1;iRNA_m5C:0.999536712157815 18071 chr7 76112191 76112191 1 + G T BLCA 76112193 + 76112173 76112213 41 GAACTGGCCCCGTGTCAGGCCGCTACCGCCACTCCATGACC GAACTGGCCCCGTGTCAGTCCGCTACCGCCACTCCATGACC < 41bp 1 0.474646020061592 1 0.255779266357422 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76112193 chr7:76112191 nonsynonymous SNV 1.000 0 19 hm5C_associated_SNPs_16539 0 0 1 0 0 Nucleus 1 0.500231662722535 1 0.99953667455493 hm5C_site_18071 DeepMRMD:1;iRNA_m5C:0.99953667455493 18072 chr2 235943684 235943684 1 + G A BLCA 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGACCTCCCTCGCTGCAAGTCAGAGGGGACC < 41bp 1 0.179054833884083 1 0.0920104682445526 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943684 nonsynonymous SNV 0.755 0 13 hm5C_associated_SNPs_16540 0 0 1 0 2 cytosol 1 0.500231645602973 1 0.999536708794054 hm5C_site_18072 DeepMRMD:1;iRNA_m5C:0.999536708794054 18073 chr17 77043906 77043906 1 + C T BLCA 77043900 + 77043880 77043920 41 TACTGCTACGTGCCCGGCCTCTACTTCTTCAGCCTCAACGT TACTGCTACGTGCCCGGCCTCTACTTTTTCAGCCTCAACGT < 41bp 1 0.369049704445555 1 0.0558030009269714 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77043900 chr17:77043906 synonymous SNV . 0 27 hm5C_associated_SNPs_16541 0 0 0 0 0 exosome 1 0.500231643919415 1 0.999536712161169 hm5C_site_18073 DeepMRMD:1;iRNA_m5C:0.999536712161169 18074 chr8 1791542 1791542 1 + G C BLCA 1791535 + 1791515 1791555 41 GCAGGAGCTCCTTCCCTTAACAGAGCTGAGAGAGGCATCTG GCAGGAGCTCCTTCCCTTAACAGAGCTCAGAGAGGCATCTG < 41bp 1 0.664620450884637 1 0.403244733810425 experiment 0.670759098230726 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791535 chr8:1791542 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_16542 0 0 1 0 2 Nucleus 1 0.500231645486837 1 0.999536709026326 hm5C_site_18074 DeepMRMD:1;iRNA_m5C:0.999536709026326 18075 chr8 1791542 1791542 1 + G C BLCA 1791550 + 1791530 1791570 41 CTTAACAGAGCTGAGAGAGGCATCTGGAGCTGCAGCATGGA CTTAACAGAGCTCAGAGAGGCATCTGGAGCTGCAGCATGGA < 41bp 1 0.278487665268487 1 0.217805743217468 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791550 chr8:1791542 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_16543 0 0 1 0 2 Nucleus 1 0.500231643921109 1 0.999536712157782 hm5C_site_18075 DeepMRMD:1;iRNA_m5C:0.999536712157782 18076 chr8 145150898 145150898 1 + C T BLCA 145150914 + 145150894 145150934 41 GTCTCACCGTGGCCTCCTCTCTTCCTTGGACCACACCAGGT GTCTTACCGTGGCCTCCTCTCTTCCTTGGACCACACCAGGT < 41bp 1 0.333053564890733 1 0.678526341915131 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150914 chr8:145150898 nonsynonymous SNV 0.961 4 5 hm5C_associated_SNPs_16544 0 0 1 0 1 Ribosome 1 0.500231643921092 0.642947316169738 0.999536712157815 hm5C_site_18076 DeepMRMD:0.642947316169738;iRNA_m5C:0.999536712157815 18077 chr6 158922935 158922935 1 + C G BLCA 158922933 + 158922913 158922953 41 AGTGCCACCCAGTACCCAGTCTCCAACCGGTACTCCAATCC AGTGCCACCCAGTACCCAGTCTGCAACCGGTACTCCAATCC < 41bp 1 0.643302440042069 1 0.673686325550079 experiment 0.713395119915862 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TULP4 ENSG00000130338 CDS Human protein_coding chr6:158922933 chr6:158922935 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_16545 0 0 1 0 0 Ribosome 1 0.500231643906739 0.652627348899842 0.999536712186522 hm5C_site_18077 DeepMRMD:0.652627348899842;iRNA_m5C:0.999536712186522 18078 chr5 167826567 167826567 1 + G A BLCA 167826565 + 167826545 167826585 41 AAGAGCGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT AAGAGCGTGGCTTTCAGACCCTAAAGAAGTAAGTACACCCT < 41bp 1 0.534820578898643 1 0.263140916824341 experiment 0.930358842202714 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167826565 chr5:167826567 synonymous SNV . 0 23 hm5C_associated_SNPs_16546 0 0 1 0 2 Ribosome 1 0.500231644866329 1 0.999536710267341 hm5C_site_18078 DeepMRMD:1;iRNA_m5C:0.999536710267341 18079 chr12 109684179 109684179 1 + G A BLCA 109684168 + 109684148 109684188 41 TCCCAAAATTTACGTGGCAGCCAACAGTGGCGCCCGTATTG TCCCAAAATTTACGTGGCAGCCAACAGTGGCACCCGTATTG < 41bp 1 0.0334448378104284 1 0.290416598320007 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109684168 chr12:109684179 nonsynonymous SNV 0.995 5 32 hm5C_associated_SNPs_16547 0 0 0 0 1 Nucleus 1 0.500231643921386 1 0.999536712157228 hm5C_site_18079 DeepMRMD:1;iRNA_m5C:0.999536712157228 18080 chr16 22271812 22271812 1 + A G BLCA 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACGTGGC < 41bp 1 0.379747379260473 1 0.746522307395935 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271812 nonsynonymous SNV 0.802 0 37 hm5C_associated_SNPs_16551 0 0 1 0 2 Nucleus 1 0.500231618945965 0.50695538520813 0.999536762108071 hm5C_site_18080 DeepMRMD:0.50695538520813;iRNA_m5C:0.999536762108071 18081 chr1 10328316 10328316 1 + G A BLCA 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATAATGAGACCAACCTTTCCACTAAGAAGGTAGG < 41bp 1 0.0032145139349926 1 0.0657700300216675 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328316 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_16552 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18081 DeepMRMD:1;iRNA_m5C:0.999536712157815 18082 chr18 13645312 13645312 1 + G T BLCA 13645293 + 13645273 13645313 41 CCACCTCCTTACCAGGGGCCCTGCACCCTGCAGCTCCGGGA CCACCTCCTTACCAGGGGCCCTGCACCCTGCAGCTCCGGTA < 41bp 1 0.5150046040218 1 0.0804689228534698 experiment 0.969990791956399 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLRAD4 ENSG00000168675 CDS Human protein_coding chr18:13645293 chr18:13645312 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_16553 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18082 DeepMRMD:1;iRNA_m5C:0.999536712157815 18083 chr9 106874033 106874033 1 + C G BLCA 106874053 + 106874033 106874073 41 CTTGCTGGTCAAATGATGGCCTGTAAAAATGATATAAGTAA GTTGCTGGTCAAATGATGGCCTGTAAAAATGATATAAGTAA < 41bp 1 0.432410895361131 1 0.410792410373688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106874053 chr9:106874033 nonsynonymous SNV 0.994 5 1 hm5C_associated_SNPs_16554 0 0 1 0 0 Cytosol 1 0.500231248944495 1 0.99953750211101 hm5C_site_18083 DeepMRMD:1;iRNA_m5C:0.99953750211101 18084 chr10 73992847 73992847 1 + G T BLCA 73992860 + 73992840 73992880 41 AGCAGCTGCTGGGATTCACCCCCTCTTCAGGTTGATACTGC AGCAGCTTCTGGGATTCACCCCCTCTTCAGGTTGATACTGC < 41bp 1 0.167196072174654 1 0.0890012383460999 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73992860 chr10:73992847 synonymous SNV . 0 8 hm5C_associated_SNPs_16555 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18084 DeepMRMD:1;iRNA_m5C:0.999536712157815 18085 chr22 20079084 20079084 1 + C A BLCA 20079093 + 20079073 20079113 41 GCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA GCAGGCGGAGTACGAGAGGCCCATCTTGCCAGCCAATCAGA < 41bp 1 0.0537462428228983 1 0.130802482366562 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20079093 chr22:20079084 nonsynonymous SNV 0.926 2 12 hm5C_associated_SNPs_16556 0 0 1 0 1 Nucleus 1 0.500231391784381 1 0.999537216431238 hm5C_site_18085 DeepMRMD:1;iRNA_m5C:0.999537216431238 18086 chr1 12061880 12061880 1 + A T BLCA 12061870 + 12061850 12061890 41 AAGTGAGGATGTTTGAGTTTCAGAATTTTGAGAGGAGATTT AAGTGAGGATGTTTGAGTTTCAGAATTTTGTGAGGAGATTT < 41bp 1 0.611597846926254 1 0.550802826881409 experiment 0.776804306147491 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061870 chr1:12061880 nonsynonymous SNV 0.996 5 31 hm5C_associated_SNPs_16557 0 0 1 0 2 Ribosome 1 0.500231644101484 0.898394346237182 0.999536711797033 hm5C_site_18086 DeepMRMD:0.898394346237182;iRNA_m5C:0.999536711797033 18087 chr3 50006080 50006080 1 + G C BLCA 50006076 + 50006056 50006096 41 GATTACAGAAGCATGGAGTACCGTGATGTGGATCATAGGCT GATTACAGAAGCATGGAGTACCGTCATGTGGATCATAGGCT < 41bp 1 0.0570360431201876 1 0.0572609007358551 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50006076 chr3:50006080 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_16558 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18087 DeepMRMD:1;iRNA_m5C:0.999536712157815 18088 chr11 63996776 63996776 1 + G A BLCA 63996766 + 63996746 63996786 41 CAGCCCCTGCTGTTGGGCATCGCCCGAAATGAGACCAGTGC CAGCCCCTGCTGTTGGGCATCGCCCGAAATAAGACCAGTGC < 41bp 1 0.535875224621213 1 0.35752409696579 experiment 0.928249550757573 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996766 chr11:63996776 nonsynonymous SNV 0.943 1 31 hm5C_associated_SNPs_16559 0 0 1 0 2 Ribosome 1 0.500231643921308 1 0.999536712157385 hm5C_site_18088 DeepMRMD:1;iRNA_m5C:0.999536712157385 18089 chr6 151671634 151671634 1 + G A BLCA 151671614 + 151671594 151671634 41 AAAAGAGCAAGGAGAGGGTCCTCTTCTGATGAGGAAGGGGG AAAAGAGCAAGGAGAGGGTCCTCTTCTGATGAGGAAGGGGA < 41bp 1 0.042129302380673 1 0.118367522954941 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151671614 chr6:151671634 nonsynonymous SNV 0.015 0 41 hm5C_associated_SNPs_16560 0 0 1 0 0 Ribosome 1 0.500231643903239 1 0.999536712193521 hm5C_site_18089 DeepMRMD:1;iRNA_m5C:0.999536712193521 18090 chr11 598428 598428 1 + C T BLCA 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGTGACTG < 41bp 1 0.109250908914364 1 0.35287743806839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598428 nonsynonymous SNV 0.003 1 36 hm5C_associated_SNPs_16563 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18090 DeepMRMD:1;iRNA_m5C:0.999536712157815 18091 chr5 154174850 154174850 1 + C G BLCA 154174837 + 154174817 154174857 41 ACCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCAC ACCCTTATTGCTTCCTTCCACCGAGTGCAGGCCGTTACCAC < 41bp 1 0.320508491316999 1 0.469496250152588 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174837 chr5:154174850 nonsynonymous SNV 0.996 4 34 hm5C_associated_SNPs_16564 0 0 1 0 1 Cytosol 1 0.500224609822533 1 0.999550780354934 hm5C_site_18091 DeepMRMD:1;iRNA_m5C:0.999550780354934 18092 chr5 154174850 154174850 1 + C G BLCA 154174838 + 154174818 154174858 41 CCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCACT CCCTTATTGCTTCCTTCCACCGAGTGCAGGCCGTTACCACT < 41bp 1 0.371957873739729 1 0.888797879219055 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174838 chr5:154174850 nonsynonymous SNV 0.996 4 33 hm5C_associated_SNPs_16565 0 0 1 0 1 Cytosol 1 0.500231643916494 0.22240424156189 0.999536712167013 hm5C_site_18092 DeepMRMD:0.22240424156189;iRNA_m5C:0.999536712167013 18093 chr19 19649166 19649166 1 + C G BLCA 19649177 + 19649157 19649197 41 CCATGGCGTCGCTGCTGCCACTGCTCTGTCTCTGTGTCGTC CCATGGCGTGGCTGCTGCCACTGCTCTGTCTCTGTGTCGTC < 41bp 1 0.505315729792496 1 0.160707980394363 experiment 0.989368540415008 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19649177 chr19:19649166 nonsynonymous SNV 0.063 2 10 hm5C_associated_SNPs_16566 0 0 0 0 1 exosome 1 0.500231679224684 1 0.999536641550632 hm5C_site_18093 DeepMRMD:1;iRNA_m5C:0.999536641550632 18094 chr9 137702143 137702143 1 + A G BLCA 137702152 + 137702132 137702172 41 GCAAGGGGGACAAAGGAGAACAGGTAAGTATTGGCACGGGG GCAAGGGGGACGAAGGAGAACAGGTAAGTATTGGCACGGGG < 41bp 1 0.514812749835324 1 0.59991854429245 experiment 0.970374500329353 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137702152 chr9:137702143 nonsynonymous SNV 0.988 4 12 hm5C_associated_SNPs_16567 0 0 0 0 2 Nucleus 1 0.500231644083041 0.8001629114151 0.999536711833919 hm5C_site_18094 DeepMRMD:0.8001629114151;iRNA_m5C:0.999536711833919 18095 chr17 76167700 76167700 1 + C T BLCA 76167712 + 76167692 76167732 41 GCAGCCATCACCTTCAGCTTCTTTTCCATCTTCTCCTGGGT GCAGCCATTACCTTCAGCTTCTTTTCCATCTTCTCCTGGGT < 41bp 1 0.0521742619516304 1 0.0362574756145477 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167712 chr17:76167700 synonymous SNV . 0 9 hm5C_associated_SNPs_16568 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_18095 DeepMRMD:1;iRNA_m5C:0.999536712157818 18096 chr1 109806818 109806818 1 + G A BLCA 109806832 + 109806812 109806852 41 CACTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCC CACTGGAAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCC < 41bp 1 0.160522840926241 1 0.173907458782196 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806832 chr1:109806818 nonsynonymous SNV 0.999 0 7 hm5C_associated_SNPs_16569 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164392448 1 0.999536712151041 hm5C_site_18096 DeepMRMD:1;iRNA_m5C:0.999536712151041 18097 chr1 109806818 109806818 1 + G A BLCA 109806833 + 109806813 109806853 41 ACTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCCT ACTGGAAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCCT < 41bp 1 0.18250762813481 1 0.14259946346283 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806833 chr1:109806818 nonsynonymous SNV 0.999 0 6 hm5C_associated_SNPs_16570 0 0 1 0 0 Endoplasmic reticulum 1 0.500231578421059 1 0.999536843157881 hm5C_site_18097 DeepMRMD:1;iRNA_m5C:0.999536843157881 18098 chr1 109806818 109806818 1 + G A BLCA 109806834 + 109806814 109806854 41 CTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCCTT CTGGAAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCCTT < 41bp 1 0.315939800978633 1 0.18098521232605 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806834 chr1:109806818 nonsynonymous SNV 0.999 0 5 hm5C_associated_SNPs_16571 0 0 1 0 0 Endoplasmic reticulum 1 0.500236468416931 1 0.999527063166138 hm5C_site_18098 DeepMRMD:1;iRNA_m5C:0.999527063166138 18099 chr16 89628100 89628100 1 + C T BLCA 89628120 + 89628100 89628140 41 CGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCC TGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCC < 41bp 1 0.682731703765912 1 0.349055290222168 experiment 0.634536592468176 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628120 chr16:89628100 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_16572 0 0 1 0 3 Cytosol 1 0.500231643861972 1 0.999536712276056 hm5C_site_18099 DeepMRMD:1;iRNA_m5C:0.999536712276056 18100 chr6 44219858 44219858 1 + G A BLCA 44219840 + 44219820 44219860 41 CCATTGACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGAT CCATTGACGAGTACTGTGTGCAGCAGCTCAAGGAATTTAAT < 41bp 1 0.625199979193509 1 0.181895166635513 experiment 0.749600041612983 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219840 chr6:44219858 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_16573 0 0 1 0 0 Nucleus 1 0.500233477654294 1 0.999533044691413 hm5C_site_18100 DeepMRMD:1;iRNA_m5C:0.999533044691413 18101 chr6 44219858 44219858 1 + G A BLCA 44219869 + 44219849 44219889 41 AAGGAATTTGATGGGAAGAGCCTGGTCTCAGTTACCAAGGA AAGGAATTTAATGGGAAGAGCCTGGTCTCAGTTACCAAGGA < 41bp 1 0.252235908409549 1 0.212072461843491 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219869 chr6:44219858 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_16575 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18101 DeepMRMD:1;iRNA_m5C:0.999536712157815 18102 chr6 44219858 44219858 1 + G A BLCA 44219877 + 44219857 44219897 41 TGATGGGAAGAGCCTGGTCTCAGTTACCAAGGAGGGTCTGG TAATGGGAAGAGCCTGGTCTCAGTTACCAAGGAGGGTCTGG < 41bp 1 0.418150281663961 1 0.196249097585678 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219877 chr6:44219858 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_16578 0 0 1 0 0 Nucleus 1 0.500231694536113 1 0.999536610927774 hm5C_site_18102 DeepMRMD:1;iRNA_m5C:0.999536610927774 18103 chr16 89628134 89628134 1 + C T BLCA 89628120 + 89628100 89628140 41 CGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCC CGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTTGGCCCC < 41bp 1 0.669462731675703 1 0.465872913599014 experiment 0.661074536648593 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628120 chr16:89628134 nonsynonymous SNV 0.657 0 35 hm5C_associated_SNPs_16579 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18103 DeepMRMD:1;iRNA_m5C:0.999536712157815 18104 chr16 89628134 89628134 1 + C T BLCA 89628153 + 89628133 89628173 41 TCGGCCCCCAAGAAGGGAGACAGTTCTGTGAGTACACGGCT TTGGCCCCCAAGAAGGGAGACAGTTCTGTGAGTACACGGCT < 41bp 1 0.154227657294642 1 0.0816806256771088 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89628153 chr16:89628134 nonsynonymous SNV 0.657 0 2 hm5C_associated_SNPs_16580 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_18104 DeepMRMD:1;iRNA_m5C:0.999536712157815 18105 chr22 23596140 23596140 1 + C G BLCA 23596125 + 23596105 23596145 41 AGCAGCAAGGGCAGGGGCAGCCGGGATGCGCTGGTCTCGGG AGCAGCAAGGGCAGGGGCAGCCGGGATGCGCTGGTGTCGGG < 41bp 1 0.610132429618267 1 0.708578765392303 experiment 0.779735140763466 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23596125 chr22:23596140 synonymous SNV . 0 36 hm5C_associated_SNPs_16581 0 0 1 0 1 Ribosome 1 0.500231640201213 0.582842469215394 0.999536719597574 hm5C_site_18105 DeepMRMD:0.582842469215394;iRNA_m5C:0.999536719597574 18106 chr1 151063031 151063031 1 + C T BLCA 151063038 + 151063018 151063058 41 GACATGCGCACATCGTGGAACTGCTTGTTCGGGTAAAGCAA GACATGCGCACATTGTGGAACTGCTTGTTCGGGTAAAGCAA < 41bp 1 0.436387369685958 1 0.156691610813141 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151063038 chr1:151063031 synonymous SNV . 0 14 hm5C_associated_SNPs_16582 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18106 DeepMRMD:1;iRNA_m5C:0.999536712157815 18107 chr2 202141606 202141606 1 + C G BLCA 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTGTCTGATCATGAACAATCA < 41bp 1 0.25360957100215 1 0.214373171329498 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141606 nonsynonymous SNV 0.988 2 33 hm5C_associated_SNPs_16583 0 0 1 0 1 Nucleus 1 0.500231741002919 1 0.999536517994162 hm5C_site_18107 DeepMRMD:1;iRNA_m5C:0.999536517994162 18108 chr2 38908553 38908553 1 + C T BLCA 38908545 + 38908525 38908565 41 ACACCCTGGATGGCGGAGAGCTCATAGTCAACTACAGAGCA ACACCCTGGATGGCGGAGAGCTCATAGTTAACTACAGAGCA < 41bp 1 0.306247317343882 1 0.113831579685211 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908545 chr2:38908553 synonymous SNV . 0 29 hm5C_associated_SNPs_16584 0 0 1 0 1 Ribosome 1 0.500231643495182 1 0.999536713009637 hm5C_site_18108 DeepMRMD:1;iRNA_m5C:0.999536713009637 18109 chr7 87530136 87530136 1 + G C BLCA 87530119 + 87530099 87530139 41 AGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAG AGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAGACAAG < 41bp 1 0.287963309711854 1 0.619842767715454 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530119 chr7:87530136 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_16585 0 0 0 0 2 chromatin 1 0.500231643921094 0.760314464569092 0.999536712157813 hm5C_site_18109 DeepMRMD:0.760314464569092;iRNA_m5C:0.999536712157813 18110 chr7 87530136 87530136 1 + G C BLCA 87530124 + 87530104 87530144 41 GGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAGAA GGTGGAACCTCAATTCAACTCCAGTTGAAAGACAAGAAGAA < 41bp 1 0.34304092933151 1 0.665582358837128 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530124 chr7:87530136 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_16587 0 0 0 0 2 chromatin 1 0.500240690058996 0.668835282325744 0.999518619882009 hm5C_site_18110 DeepMRMD:0.668835282325744;iRNA_m5C:0.999518619882009 18111 chr21 45736388 45736388 1 + C T BLCA 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACGCCCTTTGCCTTCGACCGGA < 41bp 1 0.476207090695892 1 0.260987907648087 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736388 nonsynonymous SNV 0.411 5 27 hm5C_associated_SNPs_16588 0 0 1 0 2 Ribosome 1 0.500231643923248 1 0.999536712153504 hm5C_site_18111 DeepMRMD:1;iRNA_m5C:0.999536712153504 18112 chr21 45736388 45736388 1 + C T BLCA 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACGCCCTTTGCCTTCGACCGGATC < 41bp 1 0.118826923279986 1 0.0400905013084412 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736388 nonsynonymous SNV 0.411 5 25 hm5C_associated_SNPs_16589 0 0 1 0 2 Ribosome 1 0.500231643912942 1 0.999536712174117 hm5C_site_18112 DeepMRMD:1;iRNA_m5C:0.999536712174117 18113 chr21 45736388 45736388 1 + C T BLCA 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACGCCCTTTGCCTTCGACCGGATCC < 41bp 1 0.0369643570566952 1 0.0730120241641998 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736388 nonsynonymous SNV 0.411 5 24 hm5C_associated_SNPs_16590 0 0 1 0 2 Ribosome 1 0.50023164392109 1 0.999536712157821 hm5C_site_18113 DeepMRMD:1;iRNA_m5C:0.999536712157821 18114 chr21 45736388 45736388 1 + C T BLCA 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACGCCCTTTGCCTTCGACCGGATCCT < 41bp 1 0.172533372666172 1 0.0633589923381805 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736388 nonsynonymous SNV 0.411 5 23 hm5C_associated_SNPs_16591 0 0 1 0 2 Ribosome 1 0.500231643922278 1 0.999536712155443 hm5C_site_18114 DeepMRMD:1;iRNA_m5C:0.999536712155443 18115 chr19 39208572 39208572 1 + C T BLCA 39208581 + 39208561 39208601 41 CCCCAGGACATCAACAATGGCTGGCAGCACTTGGAGCAGGC CCCCAGGACATTAACAATGGCTGGCAGCACTTGGAGCAGGC < 41bp 1 0.320607049647355 1 0.153390467166901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39208581 chr19:39208572 synonymous SNV . 0 12 hm5C_associated_SNPs_16592 0 0 1 0 1 Nucleus 1 0.500231644029485 1 0.99953671194103 hm5C_site_18115 DeepMRMD:1;iRNA_m5C:0.99953671194103 18116 chr19 39208572 39208572 1 + C T BLCA 39208590 + 39208570 39208610 41 ATCAACAATGGCTGGCAGCACTTGGAGCAGGCTGAGAAGGG ATTAACAATGGCTGGCAGCACTTGGAGCAGGCTGAGAAGGG < 41bp 1 0.485976789391139 1 0.356881588697433 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39208590 chr19:39208572 synonymous SNV . 0 3 hm5C_associated_SNPs_16593 0 0 1 0 1 Nucleus 1 0.500231643921102 1 0.999536712157795 hm5C_site_18116 DeepMRMD:1;iRNA_m5C:0.999536712157795 18117 chr11 34167637 34167637 1 + G A BLCA 34167634 + 34167614 34167654 41 TTTTGATTTTTCTCTAGTGACAAGAAAAGGAAGTTAGAGGC TTTTGATTTTTCTCTAGTGACAAAAAAAGGAAGTTAGAGGC < 41bp 1 0.459042111737666 1 0.423616826534271 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34167634 chr11:34167637 synonymous SNV . 0 24 hm5C_associated_SNPs_16594 0 0 1 0 1 chromatin 1 0.500231653775511 1 0.999536692448977 hm5C_site_18117 DeepMRMD:1;iRNA_m5C:0.999536692448977 18118 chr8 21859708 21859708 1 + G C BLCA 21859721 + 21859701 21859741 41 CCAAGAAGAGGACCACACCCCTGAACCAGGAGAGCGACCGC CCAAGAACAGGACCACACCCCTGAACCAGGAGAGCGACCGC < 41bp 1 0.672233144915013 1 0.854190587997437 experiment 0.655533710169973 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859721 chr8:21859708 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_16595 0 0 1 0 2 Cytosol 1 0.500231643921092 0.291618824005126 0.999536712157815 hm5C_site_18118 DeepMRMD:0.291618824005126;iRNA_m5C:0.999536712157815 18119 chr19 54710425 54710425 1 + C T BLCA 54710423 + 54710403 54710443 41 TCCCTATCTCCTATGCAGCCCTCGGAGGTGATGGGTGTGAA TCCCTATCTCCTATGCAGCCCTTGGAGGTGATGGGTGTGAA < 41bp 1 0.360087254147452 1 0.171262264251709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54710423 chr19:54710425 nonsynonymous SNV 0.084 3 23 hm5C_associated_SNPs_16596 0 0 1 0 1 Ribosome 1 0.500231644354518 1 0.999536711290964 hm5C_site_18119 DeepMRMD:1;iRNA_m5C:0.999536711290964 18120 chr1 163306609 163306609 1 + G A BLCA 163306605 + 163306585 163306625 41 ATTCACTTCAGAGAAGCATGCCGTGAAACGTATATGGAATT ATTCACTTCAGAGAAGCATGCCGTAAAACGTATATGGAATT < 41bp 1 0.246732691030177 1 0.3482785820961 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163306605 chr1:163306609 nonsynonymous SNV 0.988 2 25 hm5C_associated_SNPs_16597 0 0 1 0 2 Cytosol 1 0.500231643686225 1 0.99953671262755 hm5C_site_18120 DeepMRMD:1;iRNA_m5C:0.99953671262755 18121 chr11 65267658 65267658 1 + T A BLCA 65267647 + 65267627 65267667 41 TCAAAAAGCTACTAAAAGGACTGGTGTAATTTAAAAAAAAC TCAAAAAGCTACTAAAAGGACTGGTGTAATTAAAAAAAAAC < 41bp 1 0.479514910235772 1 0.241367012262344 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267647 chr11:65267658 . . 0 32 hm5C_associated_SNPs_16598 0 0 1 0 0 unknown 1 0.500698675882503 1 0.998602648234994 hm5C_site_18121 DeepMRMD:1;iRNA_m5C:0.998602648234994 18122 chr8 145150823 145150823 1 + G C BLCA 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGCAGGGGGTGCGCGGCTGGCCATGGCTCTGCATTCGGCTG < 41bp 1 0.481438288093911 1 0.34917151927948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150823 nonsynonymous SNV 0.749 4 14 hm5C_associated_SNPs_16599 0 0 1 0 1 Ribosome 1 0.500231643919295 1 0.999536712161409 hm5C_site_18122 DeepMRMD:1;iRNA_m5C:0.999536712161409 18123 chr8 107754479 107754479 1 + G A BLCA 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGCGTTAGCATCTGAGCCACTAAAAGTGAGTGATGGC < 41bp 1 0.0529830148230362 1 0.0894170105457306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754479 synonymous SNV . 0 26 hm5C_associated_SNPs_16600 0 0 0 0 2 chromatin 1 0.50020969868105 1 0.9995806026379 hm5C_site_18123 DeepMRMD:1;iRNA_m5C:0.9995806026379 18124 chr8 107754479 107754479 1 + G A BLCA 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGCGTTAGCATCTGAGCCACTAAAAGTGAGTGATGGCT < 41bp 1 0.248768525977469 1 0.139070957899094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754479 synonymous SNV . 0 25 hm5C_associated_SNPs_16601 0 0 0 0 2 chromatin 1 0.50023484279379 1 0.99953031441242 hm5C_site_18124 DeepMRMD:1;iRNA_m5C:0.99953031441242 18125 chr1 179310414 179310414 1 + C T BLCA 179310411 + 179310391 179310431 41 TGTGTTAGCATATACACTGCCACCAGCTTCCCGGTTCATCA TGTGTTAGCATATACACTGCCACTAGCTTCCCGGTTCATCA < 41bp 1 0.493099700345287 1 0.0510377287864685 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179310411 chr1:179310414 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_16602 0 0 1 0 1 Ribosome 1 0.500231864090481 1 0.999536271819039 hm5C_site_18125 DeepMRMD:1;iRNA_m5C:0.999536271819039 18126 chr1 162740264 162740264 1 + G T BLCA 162740248 + 162740228 162740268 41 TTCGCCCTGACTACCAGGAGCCATCCAGGCTGATACGAAAA TTCGCCCTGACTACCAGGAGCCATCCAGGCTGATACTAAAA < 41bp 1 0.0138365434095986 1 0.046593964099884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162740248 chr1:162740264 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_16603 0 0 0 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18126 DeepMRMD:1;iRNA_m5C:0.999536712157815 18127 chr20 60882753 60882753 1 + C A BLCA 60882762 + 60882742 60882782 41 AGCAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAG AGCAACTAGCCAGAGCCCCGCGCCCAGTTCCGGGAATGGAG < 41bp 1 0.265553323816371 1 0.469437628984451 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882762 chr20:60882753 nonsynonymous SNV 0.151 1 12 hm5C_associated_SNPs_16604 0 0 1 0 0 Ribosome 1 0.500231643920125 1 0.999536712159749 hm5C_site_18127 DeepMRMD:1;iRNA_m5C:0.999536712159749 18128 chr20 60882753 60882753 1 + C A BLCA 60882764 + 60882744 60882784 41 CAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAGCC CAACTAGCCAGAGCCCCGCGCCCAGTTCCGGGAATGGAGCC < 41bp 1 0.219095940454778 1 0.339968860149384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882764 chr20:60882753 nonsynonymous SNV 0.151 1 10 hm5C_associated_SNPs_16605 0 0 1 0 0 Ribosome 1 0.500231643911473 1 0.999536712177055 hm5C_site_18128 DeepMRMD:1;iRNA_m5C:0.999536712177055 18129 chr3 12531405 12531405 1 + G A BLCA 12531390 + 12531370 12531410 41 CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTC CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAAAATTC < 41bp 1 0.312531318851308 1 0.185144662857056 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12531390 chr3:12531405 nonsynonymous SNV 0.009 1 36 hm5C_associated_SNPs_16606 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18129 DeepMRMD:1;iRNA_m5C:0.999536712157815 18130 chr16 57241992 57241992 1 + A G BLCA 57241985 + 57241965 57242005 41 TCCAGTGATCAGGAACCTCCCTATTCAATGATAACATTACA TCCAGTGATCAGGAACCTCCCTATTCAGTGATAACATTACA < 41bp 1 0.101821134582392 1 0.0488901436328888 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57241985 chr16:57241992 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_16607 0 0 1 0 2 Ribosome 1 0.500232833543612 1 0.999534332912775 hm5C_site_18130 DeepMRMD:1;iRNA_m5C:0.999534332912775 18131 chr1 114514536 114514536 1 + G A BLCA 114514546 + 114514526 114514566 41 CGAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA CGAGCTCAACACGGGGGGACCAGTGCAGCACAACCACTCAA < 41bp 1 0.527302911446074 1 0.652550458908081 experiment 0.945394177107852 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114514546 chr1:114514536 nonsynonymous SNV 0.250 4 11 hm5C_associated_SNPs_16608 0 0 1 0 2 Cytosol 1 0.500231643921092 0.694899082183838 0.999536712157815 hm5C_site_18131 DeepMRMD:0.694899082183838;iRNA_m5C:0.999536712157815 18132 chr4 152024203 152024203 1 + A C BLCA 152024223 + 152024203 152024243 41 AATGACTTGAAAGAAGTGGTCAATAAATTGTAAGTGTTTCT CATGACTTGAAAGAAGTGGTCAATAAATTGTAAGTGTTTCT < 41bp 1 0.338217075914618 1 0.103535771369934 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPS3A ENSG00000145425 CDS Human protein_coding chr4:152024223 chr4:152024203 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_16609 0 0 1 0 1 Cytosol 1 0.50023165571408 1 0.999536688571841 hm5C_site_18132 DeepMRMD:1;iRNA_m5C:0.999536688571841 18133 chr1 65871788 65871788 1 + C T BLCA 65871792 + 65871772 65871812 41 TGCCTGGGGGCCAGAACGAACGTGGGAAAGGATCAAGTAAT TGCCTGGGGGCCAGAATGAACGTGGGAAAGGATCAAGTAAT < 41bp 1 0.612654917168177 1 0.428588330745697 experiment 0.774690165663646 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871792 chr1:65871788 synonymous SNV . 0 17 hm5C_associated_SNPs_16610 0 0 0 0 1 Cytosol 1 0.500231643921038 1 0.999536712157924 hm5C_site_18133 DeepMRMD:1;iRNA_m5C:0.999536712157924 18134 chr3 183369003 183369003 1 + G A BLCA 183369020 + 183369000 183369040 41 CATGAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT CATAAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT < 41bp 1 0.1018304764915 1 0.208865523338318 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183369020 chr3:183369003 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_16611 0 0 1 0 1 Ribosome 1 0.500232136206705 1 0.99953572758659 hm5C_site_18134 DeepMRMD:1;iRNA_m5C:0.99953572758659 18135 chr20 47711290 47711290 1 + G C BLCA 47711273 + 47711253 47711293 41 CTTTCTTCCAATCCAGGACTCCATTATTACAGTCTTTGATT CTTTCTTCCAATCCAGGACTCCATTATTACAGTCTTTCATT < 41bp 1 0.0501662838751178 1 0.0806515216827393 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47711273 chr20:47711290 nonsynonymous SNV 0.990 4 38 hm5C_associated_SNPs_16612 0 0 1 0 1 Nucleus 1 0.500231643260464 1 0.999536713479072 hm5C_site_18135 DeepMRMD:1;iRNA_m5C:0.999536713479072 18136 chr2 32656088 32656088 1 + C G BLCA 32656070 + 32656050 32656090 41 TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAA TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTGAA < 41bp 1 0.266504452621467 1 0.135700821876526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656070 chr2:32656088 nonsynonymous SNV 0.937 3 39 hm5C_associated_SNPs_16613 0 0 1 0 1 Nucleus 1 0.500231643920924 1 0.999536712158152 hm5C_site_18136 DeepMRMD:1;iRNA_m5C:0.999536712158152 18137 chr8 124787454 124787454 1 + C T BLCA 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTTATGCT < 41bp 1 0.344538647461827 1 0.105997383594513 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787454 synonymous SNV . 0 36 hm5C_associated_SNPs_16614 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_18137 DeepMRMD:1;iRNA_m5C:0.999536712157817 18138 chr19 14040216 14040216 1 + C G BLCA 14040234 + 14040214 14040254 41 CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA CTGAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA < 41bp 1 0.393170504698314 1 0.601904153823853 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040234 chr19:14040216 synonymous SNV . 0 3 hm5C_associated_SNPs_16615 0 0 0 0 2 chromatin 1 0.500227381236701 0.796191692352294 0.999545237526598 hm5C_site_18138 DeepMRMD:0.796191692352294;iRNA_m5C:0.999545237526598 18139 chr10 71855428 71855428 1 + G A BLCA 71855433 + 71855413 71855453 41 TCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG TCCTTAACCCAGAGTAACATCAGCCATATTGGCTCCATGAG < 41bp 1 0.432937717802807 1 0.342587500810623 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71855433 chr10:71855428 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_16616 0 0 1 0 2 Ribosome 1 0.500231644182114 1 0.999536711635771 hm5C_site_18139 DeepMRMD:1;iRNA_m5C:0.999536711635771 18140 chr5 110097168 110097168 1 + C T BLCA 110097160 + 110097140 110097180 41 TGTGCAGAGTATGTTGGATGCTTATTTTCCAGAACTTATTG TGTGCAGAGTATGTTGGATGCTTATTTTTCAGAACTTATTG < 41bp 1 0.300992995647835 1 0.0489822030067444 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC25A46 ENSG00000164209 CDS Human protein_coding chr5:110097160 chr5:110097168 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_16617 0 0 1 0 0 Cytosol 1 0.500261046147344 1 0.999477907705312 hm5C_site_18140 DeepMRMD:1;iRNA_m5C:0.999477907705312 18141 chr20 3520912 3520912 1 + G A BLCA 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAAAGTGTAGTTGGGACCATTTATATGTTTATGATGG < 41bp 1 0.0240011030503435 1 0.117464601993561 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520912 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_16618 0 0 1 0 2 Ribosome 1 0.500231643802081 1 0.999536712395839 hm5C_site_18141 DeepMRMD:1;iRNA_m5C:0.999536712395839 18142 chr16 70162999 70162999 1 + C T BLCA 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTTGTCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT < 41bp 1 0.17940292812741 1 0.269136428833008 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70162999 nonsynonymous SNV 0.997 3 5 hm5C_associated_SNPs_16619 0 0 1 0 1 Nucleus 1 0.500231739441349 1 0.999536521117302 hm5C_site_18142 DeepMRMD:1;iRNA_m5C:0.999536521117302 18143 chr1 76255006 76255006 1 + G C BLCA 76255012 + 76254992 76255032 41 CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTAGT CTAGTATCGGACATCATCCTCATCTTTTATACACTCTTAGT < 41bp 1 0.247969349894415 1 0.0455408692359924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255012 chr1:76255006 nonsynonymous SNV 0.991 4 15 hm5C_associated_SNPs_16620 0 0 1 2 1 Nucleus 1 0.500231644027888 1 0.999536711944224 hm5C_site_18143 DeepMRMD:1;iRNA_m5C:0.999536711944224 18144 chr16 30750651 30750651 1 + C T BLCA 30750662 + 30750642 30750682 41 TGGACTTAGCAGATAGCGGGCCAGGCGGGTTGGAATTGACA TGGACTTAGTAGATAGCGGGCCAGGCGGGTTGGAATTGACA < 41bp 1 0.191999118352903 1 0.218964219093323 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30750662 chr16:30750651 nonsynonymous SNV 0.993 2 10 hm5C_associated_SNPs_16621 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18144 DeepMRMD:1;iRNA_m5C:0.999536712157815 18145 chr16 30750651 30750651 1 + C T BLCA 30750663 + 30750643 30750683 41 GGACTTAGCAGATAGCGGGCCAGGCGGGTTGGAATTGACAC GGACTTAGTAGATAGCGGGCCAGGCGGGTTGGAATTGACAC < 41bp 1 0.372745362177394 1 0.428831696510315 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30750663 chr16:30750651 nonsynonymous SNV 0.993 2 9 hm5C_associated_SNPs_16622 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18145 DeepMRMD:1;iRNA_m5C:0.999536712157815 18146 chr2 153504334 153504334 1 + G A BLCA 153504343 + 153504323 153504363 41 ACCATACAGACGAGCCGATGCGGTGAGGAGAAGCGTCAGGC ACCATACAGACAAGCCGATGCGGTGAGGAGAAGCGTCAGGC < 41bp 1 0.379424838674575 1 0.443135619163513 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153504343 chr2:153504334 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_16624 0 0 1 0 1 Ribosome 1 0.500231643920603 1 0.999536712158794 hm5C_site_18146 DeepMRMD:1;iRNA_m5C:0.999536712158794 18147 chr1 145539408 145539408 1 + C G BLCA 145539395 + 145539375 145539415 41 TAGTGCAGAACCTGACTGAACCCCCAGGCCCACCTGTGCAT TAGTGCAGAACCTGACTGAACCCCCAGGCCCACGTGTGCAT < 41bp 1 0.0563170143709883 1 0.0237301886081696 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539395 chr1:145539408 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_16625 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18147 DeepMRMD:1;iRNA_m5C:0.999536712157815 18148 chr15 100215643 100215643 1 + G C BLCA 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAGACCTCACAGTGCCAAATGCAGCTGGAAGCAGTC < 41bp 1 0.285468328175961 1 0.431822955608368 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215643 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_16626 0 0 1 0 2 Endoplasmic reticulum 1 0.500231622984665 1 0.99953675403067 hm5C_site_18148 DeepMRMD:1;iRNA_m5C:0.99953675403067 18149 chr1 230384989 230384989 1 + C T BLCA 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCT < 41bp 1 0.475208474085747 1 0.125806212425232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384989 nonsynonymous SNV 0.977 4 41 hm5C_associated_SNPs_16627 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921079 1 0.999536712157843 hm5C_site_18149 DeepMRMD:1;iRNA_m5C:0.999536712157843 18150 chr1 230384989 230384989 1 + C T BLCA 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCTGG < 41bp 1 0.256661757077664 1 0.0787017345428467 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384989 nonsynonymous SNV 0.977 4 39 hm5C_associated_SNPs_16628 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644113189 1 0.999536711773622 hm5C_site_18150 DeepMRMD:1;iRNA_m5C:0.999536711773622 18151 chrX 148628334 148628334 1 + C G BLCA 148628325 + 148628305 148628345 41 ACTTTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT ACTTTGCAATGCCCCGAAGACTTAACTCCGGATGAGGTTGT < 41bp 1 0.369893794625721 1 0.135828107595444 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXorf40A ENSG00000197620 CDS Human protein_coding chrX:148628325 chrX:148628334 synonymous SNV . 0 30 hm5C_associated_SNPs_16629 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18151 DeepMRMD:1;iRNA_m5C:0.999536712157815 18152 chr11 67075184 67075184 1 + G A BLCA 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTGCAGCCTCCCAGCGCCGAGCCTGGCGGGTC < 41bp 1 0.622739275141696 1 0.781343579292297 experiment 0.754521449716608 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075184 nonsynonymous SNV 0.806 3 14 hm5C_associated_SNPs_16630 0 0 0 0 1 nucleus 1 0.500231641996319 0.437312841415406 0.999536716007363 hm5C_site_18152 DeepMRMD:0.437312841415406;iRNA_m5C:0.999536716007363 18153 chr15 41105570 41105570 1 + T C BLCA 41105590 + 41105570 41105610 41 TGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC CGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC < 41bp 1 0.476569147581713 1 0.139754384756088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105590 chr15:41105570 synonymous SNV . 0 1 hm5C_associated_SNPs_16631 0 0 0 0 2 Ribosome 1 0.50023164784705 1 0.999536704305901 hm5C_site_18153 DeepMRMD:1;iRNA_m5C:0.999536704305901 18154 chr5 21497235 21497235 1 + C T BLCA 21497215 + 21497195 21497235 41 TGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAAC TGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAAT < 41bp 1 0.247598745914692 1 0.756800353527069 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21497215 chr5:21497235 . . 0 41 hm5C_associated_SNPs_16632 0 0 1 0 0 unknown 1 0.50018399762336 0.486399292945862 0.99963200475328 hm5C_site_18154 DeepMRMD:0.486399292945862;iRNA_m5C:0.99963200475328 18155 chr12 57485694 57485694 1 + G A BLCA 57485709 + 57485689 57485729 41 AGCCAGAAGGAAGAGGAGATCCGCAAATACAGCATCATCTA AGCCAAAAGGAAGAGGAGATCCGCAAATACAGCATCATCTA < 41bp 1 0.613142673392341 1 0.156465739011765 experiment 0.773714653215317 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAB2 ENSG00000166886 CDS Human protein_coding chr12:57485709 chr12:57485694 synonymous SNV . 0 6 hm5C_associated_SNPs_16633 0 0 1 0 1 Cytosol 1 0.500231643921087 1 0.999536712157825 hm5C_site_18155 DeepMRMD:1;iRNA_m5C:0.999536712157825 18156 chr12 57919824 57919824 1 + C T BLCA 57919804 + 57919784 57919824 41 AGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATC AGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATT < 41bp 1 0.431300284010869 1 0.0815805196762085 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919804 chr12:57919824 nonsynonymous SNV 0.940 0 41 hm5C_associated_SNPs_16634 0 0 1 0 0 chromatin 1 0.500231643921135 1 0.999536712157731 hm5C_site_18156 DeepMRMD:1;iRNA_m5C:0.999536712157731 18157 chr12 57919824 57919824 1 + C T BLCA 57919806 + 57919786 57919826 41 GCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATCAC GCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATTAC < 41bp 1 0.611377810538104 1 0.675271272659302 experiment 0.777244378923791 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919806 chr12:57919824 nonsynonymous SNV 0.940 0 39 hm5C_associated_SNPs_16635 0 0 1 0 0 chromatin 1 0.500231643694786 0.649457454681396 0.999536712610428 hm5C_site_18157 DeepMRMD:0.649457454681396;iRNA_m5C:0.999536712610428 18158 chr12 57919824 57919824 1 + C T BLCA 57919809 + 57919789 57919829 41 CCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTC CCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATTACTTC < 41bp 1 0.0727186200541786 1 0.108228921890259 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919809 chr12:57919824 nonsynonymous SNV 0.940 0 36 hm5C_associated_SNPs_16636 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18158 DeepMRMD:1;iRNA_m5C:0.999536712157815 18159 chr12 57919824 57919824 1 + C T BLCA 57919812 + 57919792 57919832 41 TGCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTC TGCCCAGGCACCCTCAGCTTCCCACTCCTCATTACTTCGTC < 41bp 1 0.0736134840459091 1 0.0405671000480652 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919812 chr12:57919824 nonsynonymous SNV 0.940 0 33 hm5C_associated_SNPs_16637 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18159 DeepMRMD:1;iRNA_m5C:0.999536712157815 18160 chr12 57919824 57919824 1 + C T BLCA 57919813 + 57919793 57919833 41 GCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCC GCCCAGGCACCCTCAGCTTCCCACTCCTCATTACTTCGTCC < 41bp 1 0.0957809283112676 1 0.048372745513916 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919813 chr12:57919824 nonsynonymous SNV 0.940 0 32 hm5C_associated_SNPs_16638 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18160 DeepMRMD:1;iRNA_m5C:0.999536712157815 18161 chr12 57919824 57919824 1 + C T BLCA 57919814 + 57919794 57919834 41 CCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCCC CCCAGGCACCCTCAGCTTCCCACTCCTCATTACTTCGTCCC < 41bp 1 0.130326870337038 1 0.0680664777755737 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919814 chr12:57919824 nonsynonymous SNV 0.940 0 31 hm5C_associated_SNPs_16639 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18161 DeepMRMD:1;iRNA_m5C:0.999536712157815 18162 chr12 57919824 57919824 1 + C T BLCA 57919816 + 57919796 57919836 41 CAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCCCTC CAGGCACCCTCAGCTTCCCACTCCTCATTACTTCGTCCCTC < 41bp 1 0.297776953129402 1 0.433526873588562 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919816 chr12:57919824 nonsynonymous SNV 0.940 0 29 hm5C_associated_SNPs_16640 0 0 1 0 0 chromatin 1 0.500231643921091 1 0.999536712157817 hm5C_site_18162 DeepMRMD:1;iRNA_m5C:0.999536712157817 18163 chr1 179851758 179851758 1 + G A BLCA 179851757 + 179851737 179851777 41 CCTCAAAATGGCGGCAGCAGCGATGCGCCTGCGTACAGAAC CCTCAAAATGGCGGCAGCAGCAATGCGCCTGCGTACAGAAC < 41bp 1 0.592170272310723 1 0.244159519672394 experiment 0.815659455378554 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TOR1AIP1 ENSG00000143337 CDS Human protein_coding chr1:179851757 chr1:179851758 nonsynonymous SNV 0.295 2 22 hm5C_associated_SNPs_16641 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_18163 DeepMRMD:1;iRNA_m5C:0.999536712157815 18164 chr6 31868798 31868798 1 + G A BLCA 31868814 - 31868794 31868834 41 CTTGCTCCTCTCCTGCTACACGGGCGCCTTGGAATTCGCTG CTTGCTCCTCTCCTGCTACACGGGCGCCTTGGAATTTGCTG < 41bp 1 0.433702544555193 1 0.639528393745422 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB12 ENSG00000204366 CDS Human protein_coding chr6:31868814 chr6:31868798 synonymous SNV . 0 37 hm5C_associated_SNPs_16642 0 0 1 0 0 exosome 1 0.500231643684856 0.720943212509156 0.999536712630288 hm5C_site_18164 DeepMRMD:0.720943212509156;iRNA_m5C:0.999536712630288 18165 chr6 41754506 41754506 1 + C T BLCA 41754513 + 41754493 41754533 41 GGAACAGGGGAGACTGGACTCGACCGAACTGAAGGAAGGGA GGAACAGGGGAGATTGGACTCGACCGAACTGAAGGAAGGGA < 41bp 1 0.40793665744965 1 0.205359399318695 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41754513 chr6:41754506 nonsynonymous SNV 0.001 1 14 hm5C_associated_SNPs_16644 0 0 1 0 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18165 DeepMRMD:1;iRNA_m5C:0.999536712157815 18166 chr16 30964944 30964944 1 + G C BLCA 30964947 + 30964927 30964967 41 CAGCACCGTCCCAAGCTGAGCCAGCCTGCCCACCCCGGCAA CAGCACCGTCCCAAGCTCAGCCAGCCTGCCCACCCCGGCAA < 41bp 1 0.3100429965226 1 0.14374053478241 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30964947 chr16:30964944 nonsynonymous SNV 0.042 0 18 hm5C_associated_SNPs_16646 0 0 1 0 0 chromatin 1 0.500231643920677 1 0.999536712158647 hm5C_site_18166 DeepMRMD:1;iRNA_m5C:0.999536712158647 18167 chr11 124747869 124747869 1 + G A BLCA 124747866 + 124747846 124747886 41 CCTGTATCTAGCTCAGACGGCCAGGGGCACGGCCGCCCCTG CCTGTATCTAGCTCAGACGGCCAAGGGCACGGCCGCCCCTG < 41bp 1 0.220128402685893 1 0.591294825077057 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747866 chr11:124747869 nonsynonymous SNV 0.131 0 24 hm5C_associated_SNPs_16647 0 0 0 0 1 exosome 1 0.500231643921092 0.817410349845886 0.999536712157815 hm5C_site_18167 DeepMRMD:0.817410349845886;iRNA_m5C:0.999536712157815 18168 chr11 124747869 124747869 1 + G A BLCA 124747867 + 124747847 124747887 41 CTGTATCTAGCTCAGACGGCCAGGGGCACGGCCGCCCCTGG CTGTATCTAGCTCAGACGGCCAAGGGCACGGCCGCCCCTGG < 41bp 1 0.52286398582487 1 0.895062923431396 experiment 0.95427202835026 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747867 chr11:124747869 nonsynonymous SNV 0.131 0 23 hm5C_associated_SNPs_16648 0 0 0 0 1 exosome 1 0.500231643958899 0.209874153137208 0.999536712082202 hm5C_site_18168 DeepMRMD:0.209874153137208;iRNA_m5C:0.999536712082202 18169 chr11 124747869 124747869 1 + G A BLCA 124747881 + 124747861 124747901 41 GACGGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCT GACGGCCAAGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCT < 41bp 1 0.133011891048596 1 0.151109874248505 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747881 chr11:124747869 nonsynonymous SNV 0.131 0 9 hm5C_associated_SNPs_16650 0 0 0 0 1 exosome 1 0.500231643686002 1 0.999536712627996 hm5C_site_18169 DeepMRMD:1;iRNA_m5C:0.999536712627996 18170 chr11 124747869 124747869 1 + G A BLCA 124747882 + 124747862 124747902 41 ACGGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTA ACGGCCAAGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTA < 41bp 1 0.160139755574896 1 0.0547613203525543 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747882 chr11:124747869 nonsynonymous SNV 0.131 0 8 hm5C_associated_SNPs_16651 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18170 DeepMRMD:1;iRNA_m5C:0.999536712157815 18171 chr11 124747869 124747869 1 + G A BLCA 124747883 + 124747863 124747903 41 CGGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTAT CGGCCAAGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTAT < 41bp 1 0.244604259506473 1 0.382664203643799 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747883 chr11:124747869 nonsynonymous SNV 0.131 0 7 hm5C_associated_SNPs_16652 0 0 0 0 1 exosome 1 0.500231639139242 1 0.999536721721517 hm5C_site_18171 DeepMRMD:1;iRNA_m5C:0.999536721721517 18172 chr11 124747869 124747869 1 + G A BLCA 124747884 + 124747864 124747904 41 GGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTATA GGCCAAGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTATA < 41bp 1 0.61137296205925 1 0.15770024061203 experiment 0.7772540758815 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747884 chr11:124747869 nonsynonymous SNV 0.131 0 6 hm5C_associated_SNPs_16653 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18172 DeepMRMD:1;iRNA_m5C:0.999536712157815 18173 chr16 57241994 57241994 1 + G A BLCA 57241985 + 57241965 57242005 41 TCCAGTGATCAGGAACCTCCCTATTCAATGATAACATTACA TCCAGTGATCAGGAACCTCCCTATTCAATAATAACATTACA < 41bp 1 0.09792840275736 1 0.0977031588554382 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57241985 chr16:57241994 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_16654 0 0 1 0 2 Ribosome 1 0.500231638621479 1 0.999536722757043 hm5C_site_18173 DeepMRMD:1;iRNA_m5C:0.999536722757043 18174 chr16 22237249 22237249 1 + G A BLCA 22237252 + 22237232 22237272 41 GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTCC GCAACCTAACAAAAAGTAAGCGGTATAGCTCCAGCGGGTCC < 41bp 1 0.512857713277486 1 0.724124491214752 experiment 0.974284573445029 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22237252 chr16:22237249 nonsynonymous SNV 0.076 0 18 hm5C_associated_SNPs_16655 0 0 0 0 1 Nucleus 1 0.500231556650624 0.551751017570496 0.999536886698752 hm5C_site_18174 DeepMRMD:0.551751017570496;iRNA_m5C:0.999536886698752 18175 chr2 48027760 48027760 1 + G T BLCA 48027758 + 48027738 48027778 41 AGGGATCATGGAAGAAGTTGCTGATGGTTTTAAGTCTAAAA AGGGATCATGGAAGAAGTTGCTTATGGTTTTAAGTCTAAAA < 41bp 1 0.0850171334945871 1 0.0384313762187958 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSH6 ENSG00000116062 CDS Human protein_coding chr2:48027758 chr2:48027760 nonsynonymous SNV 0.026 3 23 hm5C_associated_SNPs_16656 0 0 1 0 0 Nucleus 1 0.500231786713093 1 0.999536426573814 hm5C_site_18175 DeepMRMD:1;iRNA_m5C:0.999536426573814 18176 chr16 85100858 85100858 1 + C T BLCA 85100859 + 85100839 85100879 41 GAATGACATGGGCGAGTCGCCCTCGCACCCGTCCTGGGACC GAATGACATGGGCGAGTCGTCCTCGCACCCGTCCTGGGACC < 41bp 1 0.158760195065313 1 0.151472985744476 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85100859 chr16:85100858 nonsynonymous SNV 0.991 4 20 hm5C_associated_SNPs_16657 0 0 0 0 0 Nucleus 1 0.500231658490761 1 0.999536683018479 hm5C_site_18176 DeepMRMD:1;iRNA_m5C:0.999536683018479 18177 chr9 131356542 131356542 1 + G T BLCA 131356537 + 131356517 131356557 41 GTTTATGTTGTTCCGTGAAGCGAATGAACTACAGCAATGGA GTTTATGTTGTTCCGTGAAGCGAATTAACTACAGCAATGGA < 41bp 1 0.104994390135335 1 0.284831881523132 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131356537 chr9:131356542 stopgain 0.312 1 26 hm5C_associated_SNPs_16658 0 0 1 0 1 Nucleus 1 0.500235046247895 1 0.99952990750421 hm5C_site_18177 DeepMRMD:1;iRNA_m5C:0.99952990750421 18178 chr6 43173955 43173955 1 + G A BLCA 43173959 + 43173939 43173979 41 AAGATGAGGAGGAAAAGAGACTAGAGGAAGAGGAGGTAAGA AAGATGAGGAGGAAAAAAGACTAGAGGAAGAGGAGGTAAGA < 41bp 1 0.594905606977192 1 0.477222234010696 experiment 0.810188786045617 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CUL9 ENSG00000112659 CDS Human protein_coding chr6:43173959 chr6:43173955 synonymous SNV . 0 17 hm5C_associated_SNPs_16660 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18178 DeepMRMD:1;iRNA_m5C:0.999536712157815 18179 chr6 36569547 36569547 1 + C G BLCA 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCGTGCCGATCCTTCTCTAGGTCTCGTAGGT < 41bp 1 0.0240079798589889 1 0.039482057094574 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569547 nonsynonymous SNV 0.998 3 15 hm5C_associated_SNPs_16661 0 0 1 0 2 Ribosome 1 0.500231642585699 1 0.999536714828602 hm5C_site_18179 DeepMRMD:1;iRNA_m5C:0.999536714828602 18180 chr22 42262990 42262990 1 + G A BLCA 42263002 + 42262982 42263022 41 GCAGCAGCGGAGCTGTGGACCCTTCAGTGCAACGGTCATTC GCAGCAGCAGAGCTGTGGACCCTTCAGTGCAACGGTCATTC < 41bp 1 0.0180808810782057 1 0.0241656303405762 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42263002 chr22:42262990 nonsynonymous SNV 0.010 0 9 hm5C_associated_SNPs_16662 0 0 1 0 0 Ribosome 1 0.500232784657253 1 0.999534430685494 hm5C_site_18180 DeepMRMD:1;iRNA_m5C:0.999534430685494 18181 chr17 28961033 28961033 1 + T G BLCA 28961053 + 28961033 28961073 41 TATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGAC GATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGAC < 41bp 1 0.0732580662931991 1 0.0998230576515198 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28961053 chr17:28961033 . . 0 1 hm5C_associated_SNPs_16663 0 0 1 0 1 unknown 1 0.500385629352857 1 0.999228741294286 hm5C_site_18181 DeepMRMD:1;iRNA_m5C:0.999228741294286 18182 chr12 14577561 14577561 1 + G A BLCA 14577553 + 14577533 14577573 41 TATAGCCTCTAGTGAAATAACTTCTGTTGATCTGGCTTCTG TATAGCCTCTAGTGAAATAACTTCTGTTAATCTGGCTTCTG < 41bp 1 0.471428749239629 1 0.0711080133914948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14577553 chr12:14577561 nonsynonymous SNV 0.049 0 29 hm5C_associated_SNPs_16664 0 0 1 0 0 Cytosol 1 0.500231644122253 1 0.999536711755493 hm5C_site_18182 DeepMRMD:1;iRNA_m5C:0.999536711755493 18183 chr12 14577561 14577561 1 + G A BLCA 14577556 + 14577536 14577576 41 AGCCTCTAGTGAAATAACTTCTGTTGATCTGGCTTCTGGAG AGCCTCTAGTGAAATAACTTCTGTTAATCTGGCTTCTGGAG < 41bp 1 0.26898529128402 1 0.222100347280502 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14577556 chr12:14577561 nonsynonymous SNV 0.049 0 26 hm5C_associated_SNPs_16665 0 0 1 0 0 Cytosol 1 0.500231644017993 1 0.999536711964013 hm5C_site_18183 DeepMRMD:1;iRNA_m5C:0.999536711964013 18184 chr12 14577561 14577561 1 + G A BLCA 14577568 + 14577548 14577588 41 AATAACTTCTGTTGATCTGGCTTCTGGAGCACCAGCTTCCA AATAACTTCTGTTAATCTGGCTTCTGGAGCACCAGCTTCCA < 41bp 1 0.271524218783548 1 0.0359381437301636 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14577568 chr12:14577561 nonsynonymous SNV 0.049 0 14 hm5C_associated_SNPs_16666 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18184 DeepMRMD:1;iRNA_m5C:0.999536712157815 18185 chr1 39853307 39853307 1 + C G BLCA 39853302 + 39853282 39853322 41 AAGCTAAGATGTCTGAGTTGCGAGTCACTCTGGATCCAGTG AAGCTAAGATGTCTGAGTTGCGAGTGACTCTGGATCCAGTG < 41bp 1 0.168419085954871 1 0.520346701145172 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39853302 chr1:39853307 synonymous SNV . 0 26 hm5C_associated_SNPs_16667 0 0 1 0 0 Endoplasmic reticulum 1 0.500236909406267 0.959306597709656 0.999526181187466 hm5C_site_18185 DeepMRMD:0.959306597709656;iRNA_m5C:0.999526181187466 18186 chr4 74308023 74308023 1 + G A BLCA 74308041 + 74308021 74308061 41 ATGAGATAGCAAGAAGGCATCCCTTCCTGTATGCACCTACA ATAAGATAGCAAGAAGGCATCCCTTCCTGTATGCACCTACA < 41bp 1 0.066877108953201 1 0.0767460763454437 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFP ENSG00000081051 CDS Human protein_coding chr4:74308041 chr4:74308023 nonsynonymous SNV 0.325 3 3 hm5C_associated_SNPs_16668 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157813 hm5C_site_18186 DeepMRMD:1;iRNA_m5C:0.999536712157813 18187 chr19 11553282 11553282 1 + G C BLCA 11553280 + 11553260 11553300 41 GCGGACAGTGAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGG GCGGACAGTGAAGGAGGAAGCTCAGAAGCCAGAGAGAGAGG < 41bp 1 0.670252940620183 1 0.338702499866486 experiment 0.659494118759635 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553280 chr19:11553282 nonsynonymous SNV 0.906 3 23 hm5C_associated_SNPs_16669 0 0 1 0 2 Nucleus 1 0.50023169006103 1 0.999536619877939 hm5C_site_18187 DeepMRMD:1;iRNA_m5C:0.999536619877939 18188 chr19 11553282 11553282 1 + G C BLCA 11553289 + 11553269 11553309 41 GAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGGCCAAAGAGC GAAGGAGGAAGCTCAGAAGCCAGAGAGAGAGGCCAAAGAGC < 41bp 1 0.60575463744939 1 0.729320526123047 experiment 0.78849072510122 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553289 chr19:11553282 nonsynonymous SNV 0.906 3 14 hm5C_associated_SNPs_16671 0 0 1 0 2 Nucleus 1 0.500231642470896 0.541358947753906 0.999536715058208 hm5C_site_18188 DeepMRMD:0.541358947753906;iRNA_m5C:0.999536715058208 18189 chr19 11553282 11553282 1 + G C BLCA 11553302 + 11553282 11553322 41 GAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCAGAAGCT CAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCAGAAGCT < 41bp 1 0.310835704825387 1 0.518966674804688 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553302 chr19:11553282 nonsynonymous SNV 0.906 3 1 hm5C_associated_SNPs_16672 0 0 1 0 2 Nucleus 1 0.500231595242357 0.962066650390624 0.999536809515285 hm5C_site_18189 DeepMRMD:0.962066650390624;iRNA_m5C:0.999536809515285 18190 chr6 168352584 168352584 1 + G A BLCA 168352591 + 168352571 168352611 41 TCCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGA TCCTCGGGGGACAATCTGTCCCCCGACCCGTGGAAGCGGGA < 41bp 1 0.143363555217043 1 0.323737382888794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352591 chr6:168352584 nonsynonymous SNV 0.168 4 14 hm5C_associated_SNPs_16673 0 0 1 0 0 unknown 1 0.50023164391674 1 0.99953671216652 hm5C_site_18190 DeepMRMD:1;iRNA_m5C:0.99953671216652 18191 chr6 168352584 168352584 1 + G A BLCA 168352592 + 168352572 168352612 41 CCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGAC CCTCGGGGGACAATCTGTCCCCCGACCCGTGGAAGCGGGAC < 41bp 1 0.45333222351428 1 0.379425168037415 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352592 chr6:168352584 nonsynonymous SNV 0.168 4 13 hm5C_associated_SNPs_16674 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_18191 DeepMRMD:1;iRNA_m5C:0.999536712157818 18192 chr6 168352584 168352584 1 + G A BLCA 168352593 + 168352573 168352613 41 CTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGACG CTCGGGGGACAATCTGTCCCCCGACCCGTGGAAGCGGGACG < 41bp 1 0.0579233542476274 1 0.273851901292801 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352593 chr6:168352584 nonsynonymous SNV 0.168 4 12 hm5C_associated_SNPs_16675 0 0 1 0 0 unknown 1 0.500231643920746 1 0.999536712158508 hm5C_site_18192 DeepMRMD:1;iRNA_m5C:0.999536712158508 18193 chr7 101821761 101821761 1 + G A BLCA 101821775 + 101821755 101821795 41 GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT GCCATAAAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT < 41bp 1 0.51366993424361 1 0.851739645004272 experiment 0.97266013151278 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101821775 chr7:101821761 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_16676 0 0 1 0 2 Exosome 1 0.500231643920459 0.296520709991456 0.999536712159082 hm5C_site_18193 DeepMRMD:0.296520709991456;iRNA_m5C:0.999536712159082 18194 chr2 128185988 128185988 1 + G A BLCA 128185991 + 128185971 128186011 41 GACCTGGACATCAAGGAGGTCTTCGTCCACCCCAACTACAG GACCTGGACATCAAGGAAGTCTTCGTCCACCCCAACTACAG < 41bp 1 0.341135861730551 1 0.0571824312210083 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128185991 chr2:128185988 synonymous SNV . 0 18 hm5C_associated_SNPs_16677 0 0 0 0 1 nucleus 1 0.500231643817437 1 0.999536712365127 hm5C_site_18194 DeepMRMD:1;iRNA_m5C:0.999536712365127 18195 chr13 100634397 100634397 1 + G A BLCA 100634413 + 100634393 100634433 41 CGCGGCGGCGGCGGCGGCTGCCGCCGAGATGCAGGACCGTG CGCGACGGCGGCGGCGGCTGCCGCCGAGATGCAGGACCGTG < 41bp 1 0.361692643085253 1 0.20719176530838 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZIC2 ENSG00000043355 CDS Human protein_coding chr13:100634413 chr13:100634397 nonsynonymous SNV 0.245 3 5 hm5C_associated_SNPs_16678 0 0 1 0 0 Cytosol 1 0.500231638697001 1 0.999536722605999 hm5C_site_18195 DeepMRMD:1;iRNA_m5C:0.999536722605999 18196 chr3 9976525 9976525 1 + G C BLCA 9976545 + 9976525 9976565 41 GAGAGAACCATCCGGGACAACTTTGGAGGTGGAAACACTGC CAGAGAACCATCCGGGACAACTTTGGAGGTGGAAACACTGC < 41bp 1 0.096015763027671 1 0.105728387832642 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976545 chr3:9976525 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_16679 0 0 1 0 2 chromatin 1 0.500231643889542 1 0.999536712220916 hm5C_site_18196 DeepMRMD:1;iRNA_m5C:0.999536712220916 18197 chr1 242052811 242052811 1 + T G BLCA 242052812 + 242052792 242052832 41 AAGAAACCCCTGTCCCCAGTCAGAGATAACATCCAACTAAC AAGAAACCCCTGTCCCCAGGCAGAGATAACATCCAACTAAC < 41bp 1 0.593572513612806 1 0.810050308704376 experiment 0.812854972774389 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242052812 chr1:242052811 nonsynonymous SNV 0.996 3 20 hm5C_associated_SNPs_16680 0 0 1 1 2 Nucleus 1 0.500231643921092 0.379899382591248 0.999536712157815 hm5C_site_18197 DeepMRMD:0.379899382591248;iRNA_m5C:0.999536712157815 18198 chr11 130005576 130005576 1 + C T BLCA 130005561 + 130005541 130005581 41 TCTGAGGAGAGTGAGGAGATCCCACCGTTCCACCCCTTCCA TCTGAGGAGAGTGAGGAGATCCCACCGTTCCACCCTTTCCA < 41bp 1 0.235934429163218 1 0.0572077333927155 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130005561 chr11:130005576 synonymous SNV . 0 36 hm5C_associated_SNPs_16682 0 0 1 0 1 Endoplasmic reticulum 1 0.500239932923258 1 0.999520134153484 hm5C_site_18198 DeepMRMD:1;iRNA_m5C:0.999520134153484 18199 chr6 21198321 21198321 1 + C G BLCA 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TCCAAGTTTTATGTTGCACACAATGAATTCTATGAGCAGGT < 41bp 1 0.104873206402919 1 0.104843527078629 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198321 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_16683 0 0 0 0 2 Nucleus 1 0.500231676826514 1 0.999536646346973 hm5C_site_18199 DeepMRMD:1;iRNA_m5C:0.999536646346973 18200 chr6 30887966 30887966 1 + G T BLCA 30887972 + 30887952 30887992 41 GAGGATGGGACCATGACCTCCCTCTGCGGGGACTGGCTGCA GAGGATGGGACCATTACCTCCCTCTGCGGGGACTGGCTGCA < 41bp 1 0.114263954923039 1 0.281872510910034 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30887972 chr6:30887966 nonsynonymous SNV 0.994 1 15 hm5C_associated_SNPs_16684 0 0 1 0 2 Ribosome 1 0.500231117304701 1 0.999537765390598 hm5C_site_18200 DeepMRMD:1;iRNA_m5C:0.999537765390598 18201 chr19 40882643 40882643 1 + G T BLCA 40882624 + 40882604 40882644 41 TCGGAGCCATCCATGCGGGCCTTCCTGCTCTCTCTGGCTGC TCGGAGCCATCCATGCGGGCCTTCCTGCTCTCTCTGGCTTC < 41bp 1 0.0967530052297918 1 0.017210066318512 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40882624 chr19:40882643 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_16685 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921096 1 0.999536712157809 hm5C_site_18201 DeepMRMD:1;iRNA_m5C:0.999536712157809 18202 chr1 9324150 9324150 1 + G T BLCA 9324137 + 9324117 9324157 41 TTTCCCAGCAGCAGCCGGAGCAGCTGGTGCCAGGGCCAGGG TTTCCCAGCAGCAGCCGGAGCAGCTGGTGCCAGTGCCAGGG < 41bp 1 0.449879002813369 1 0.471386849880219 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control H6PD ENSG00000049239 CDS Human protein_coding chr1:9324137 chr1:9324150 nonsynonymous SNV 0.044 1 34 hm5C_associated_SNPs_16686 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18202 DeepMRMD:1;iRNA_m5C:0.999536712157815 18203 chr1 226253422 226253422 1 + A C BLCA 226253428 + 226253408 226253448 41 ACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAG ACTTCTGATTCGCACACTTCCCTTCCAGCGTCTGGTGCGAG < 41bp 1 0.0465830947279239 1 0.0614855885505676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control H3F3A ENSG00000163041 CDS Human protein_coding chr1:226253428 chr1:226253422 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_16687 0 0 0 0 2 Cytosol 1 0.500231560776158 1 0.999536878447683 hm5C_site_18203 DeepMRMD:1;iRNA_m5C:0.999536878447683 18204 chr11 125482969 125482969 1 + C G BLCA 125482974 + 125482954 125482994 41 CCAGTGAGGCCTACTCTTCTCCGTCCATTGTACTATCTGCC CCAGTGAGGCCTACTGTTCTCCGTCCATTGTACTATCTGCC < 41bp 1 0.0994828633436378 1 0.612975895404816 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125482974 chr11:125482969 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_16689 0 0 1 0 1 Endoplasmic reticulum 1 0.500193057437294 0.774048209190368 0.999613885125412 hm5C_site_18204 DeepMRMD:0.774048209190368;iRNA_m5C:0.999613885125412 18205 chr14 50247423 50247423 1 + G T BLCA 50247443 + 50247423 50247463 41 GATGCCTGGACTTACTGCATCAGTAAAAATGAATGGATACA TATGCCTGGACTTACTGCATCAGTAAAAATGAATGGATACA < 41bp 1 0.274383268061984 1 0.303805619478226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHDC2 ENSG00000165516 CDS Human protein_coding chr14:50247443 chr14:50247423 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_16690 0 0 1 0 2 Cytosol 1 0.500231643930333 1 0.999536712139334 hm5C_site_18205 DeepMRMD:1;iRNA_m5C:0.999536712139334 18206 chr17 80529635 80529635 1 + G C BLCA 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG CGCCTTACTCCTACGCGCAGCTCATAGTTCAGGCGATTACG < 41bp 1 0.0696033506982409 1 0.0411477088928223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529635 synonymous SNV . 0 23 hm5C_associated_SNPs_16691 0 0 1 0 1 Cytosol 1 0.500231649398842 1 0.999536701202315 hm5C_site_18206 DeepMRMD:1;iRNA_m5C:0.999536701202315 18207 chr16 89977038 89977038 1 + C T BLCA 89977054 + 89977034 89977074 41 TCTTCTTCCGGTCACTGTTGCCAAACTATACCATGGAGGTA TCTTTTTCCGGTCACTGTTGCCAAACTATACCATGGAGGTA < 41bp 1 0.273061838884944 1 0.180702328681946 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89977054 chr16:89977038 nonsynonymous SNV 0.406 1 5 hm5C_associated_SNPs_16692 0 0 1 0 2 Cytosol 1 0.500231643921503 1 0.999536712156994 hm5C_site_18207 DeepMRMD:1;iRNA_m5C:0.999536712156994 18208 chrX 70517696 70517696 1 + G C BLCA 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAACAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG < 41bp 1 0.208057384706711 1 0.347572326660156 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517696 nonsynonymous SNV 0.999 3 10 hm5C_associated_SNPs_16693 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18208 DeepMRMD:1;iRNA_m5C:0.999536712157815 18209 chr22 40697304 40697304 1 + C G BLCA 40697295 + 40697275 40697315 41 ACGCATTGAATGTGGGGCTCCCAGACCTTCAAACCAAAGGG ACGCATTGAATGTGGGGCTCCCAGACCTTGAAACCAAAGGG < 41bp 1 0.179650241876741 1 0.461465418338776 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40697295 chr22:40697304 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_16694 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18209 DeepMRMD:1;iRNA_m5C:0.999536712157815 18210 chr7 21934407 21934407 1 + T C BLCA 21934397 + 21934377 21934417 41 TTCGGGAAATACGTATATCACTTGAACAACTGGACCTTAGT TTCGGGAAATACGTATATCACTTGAACAACCGGACCTTAGT < 41bp 1 0.254743769896056 1 0.479752063751221 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21934397 chr7:21934407 nonsynonymous SNV 0.905 4 31 hm5C_associated_SNPs_16695 0 0 1 0 1 nucleolus 1 0.500231643918154 1 0.999536712163692 hm5C_site_18210 DeepMRMD:1;iRNA_m5C:0.999536712163692 18211 chrX 70517719 70517719 1 + G A BLCA 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAAATGCGGCG < 41bp 1 0.221976992047122 1 0.470190018415451 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517719 synonymous SNV . 0 33 hm5C_associated_SNPs_16696 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18211 DeepMRMD:1;iRNA_m5C:0.999536712157815 18212 chr17 61907789 61907789 1 + G C BLCA 61907774 + 61907754 61907794 41 GAGATGATTGGTGGACTGGACAAACAGATCAAGGAGATCAA GAGATGATTGGTGGACTGGACAAACAGATCAAGGACATCAA < 41bp 1 0.265355139205506 1 0.419875860214233 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907774 chr17:61907789 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_16697 0 0 1 0 1 Ribosome 1 0.500231745230293 1 0.999536509539415 hm5C_site_18212 DeepMRMD:1;iRNA_m5C:0.999536509539415 18213 chr17 61907789 61907789 1 + G C BLCA 61907778 + 61907758 61907798 41 TGATTGGTGGACTGGACAAACAGATCAAGGAGATCAAAGAA TGATTGGTGGACTGGACAAACAGATCAAGGACATCAAAGAA < 41bp 1 0.574539482584378 1 0.476048141717911 experiment 0.850921034831244 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907778 chr17:61907789 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_16698 0 0 1 0 1 Ribosome 1 0.500231646093699 1 0.999536707812601 hm5C_site_18213 DeepMRMD:1;iRNA_m5C:0.999536707812601 18214 chr10 116603614 116603614 1 + G C BLCA 116603627 + 116603607 116603647 41 ACTGACAGACAGACTTGCCTCCCTGTACAAGGCCCTACCTC ACTGACACACAGACTTGCCTCCCTGTACAAGGCCCTACCTC < 41bp 1 0.375043649998485 1 0.443759143352509 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM160B1 ENSG00000151553 CDS Human protein_coding chr10:116603627 chr10:116603614 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_16699 0 0 1 0 1 nucleoplasm 1 0.500231643917842 1 0.999536712164316 hm5C_site_18214 DeepMRMD:1;iRNA_m5C:0.999536712164316 18215 chr11 57427173 57427173 1 + G C BLCA 57427163 + 57427143 57427183 41 TTTCACTTGGCATGGCTGTTCTGTGCAACTGAGCGGCCGCA TTTCACTTGGCATGGCTGTTCTGTGCAACTCAGCGGCCGCA < 41bp 1 0.615096713839418 1 0.316020756959915 experiment 0.769806572321164 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLP1 ENSG00000172409 CDS Human protein_coding chr11:57427163 chr11:57427173 synonymous SNV . 0 31 hm5C_associated_SNPs_16700 0 0 1 0 0 Cytosol 1 0.500231619998024 1 0.999536760003953 hm5C_site_18215 DeepMRMD:1;iRNA_m5C:0.999536760003953 18216 chr19 17836875 17836875 1 + G T BLCA 17836880 + 17836860 17836900 41 CCCTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCT CCCTTCGAGCTGCTGTAGCCCCCGACCTCCGGGGGCTTCCT < 41bp 1 0.508896092734078 1 0.352303177118301 experiment 0.982207814531845 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836880 chr19:17836875 stopgain 0.107 1 16 hm5C_associated_SNPs_16701 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18216 DeepMRMD:1;iRNA_m5C:0.999536712157815 18217 chr19 17836875 17836875 1 + G T BLCA 17836882 + 17836862 17836902 41 CTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCTCA CTTCGAGCTGCTGTAGCCCCCGACCTCCGGGGGCTTCCTCA < 41bp 1 0.329243389783131 1 0.430772483348846 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836882 chr19:17836875 stopgain 0.107 1 14 hm5C_associated_SNPs_16702 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18217 DeepMRMD:1;iRNA_m5C:0.999536712157815 18218 chr19 45535844 45535844 1 + C T BLCA 45535862 + 45535842 45535882 41 TTCTCCCAGGCCGACGTGCACCGCCAGATTGCCATTGTGTT TTTTCCCAGGCCGACGTGCACCGCCAGATTGCCATTGTGTT < 41bp 1 0.108592480133668 1 0.126727908849716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RELB ENSG00000104856 CDS Human protein_coding chr19:45535862 chr19:45535844 synonymous SNV . 0 3 hm5C_associated_SNPs_16703 0 0 1 0 1 Cytosol 1 0.500231645530632 1 0.999536708938737 hm5C_site_18218 DeepMRMD:1;iRNA_m5C:0.999536708938737 18219 chr5 112901666 112901666 1 + A G BLCA 112901679 + 112901659 112901699 41 ACTATGGAAATAATCATAGGCATGAGAACACAGTTGCTTGG ACTATGGGAATAATCATAGGCATGAGAACACAGTTGCTTGG < 41bp 1 0.57234983515857 1 0.492031872272491 experiment 0.855300329682859 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112901679 chr5:112901666 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_16704 0 0 1 0 2 Cytosol 1 0.50023164406525 1 0.999536711869499 hm5C_site_18219 DeepMRMD:1;iRNA_m5C:0.999536711869499 18220 chr6 87865442 87865442 1 + G T BLCA 87865437 + 87865417 87865457 41 GCGGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACCGACT GCGGGAGAGCCGGGTACCGGCCGTGTAAGCGGCCACCGACT < 41bp 1 0.419716795302305 1 0.246264725923538 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF292 ENSG00000188994 CDS Human protein_coding chr6:87865437 chr6:87865442 stopgain 0.785 1 26 hm5C_associated_SNPs_16705 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18220 DeepMRMD:1;iRNA_m5C:0.999536712157815 18221 chr11 65268182 65268182 1 + G C BLCA 65268168 + 65268148 65268188 41 ACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGGATCCTA ACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGCATCCTA < 41bp 1 0.687201479739858 1 0.253857165575027 experiment 0.625597040520285 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268168 chr11:65268182 . . 0 35 hm5C_associated_SNPs_16707 0 0 1 0 0 unknown 1 0.500231643921469 1 0.999536712157062 hm5C_site_18221 DeepMRMD:1;iRNA_m5C:0.999536712157062 18222 chr11 65268182 65268182 1 + G C BLCA 65268175 + 65268155 65268195 41 GGAGGCGAGCAGGCGTTGTGCGTAGAGGATCCTAGACCAGC GGAGGCGAGCAGGCGTTGTGCGTAGAGCATCCTAGACCAGC < 41bp 1 0.540301081617169 1 0.354000568389893 experiment 0.919397836765661 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268175 chr11:65268182 . . 0 28 hm5C_associated_SNPs_16708 0 0 1 0 0 unknown 1 0.500230598770121 1 0.999538802459758 hm5C_site_18222 DeepMRMD:1;iRNA_m5C:0.999538802459758 18223 chr11 65268182 65268182 1 + G C BLCA 65268185 + 65268165 65268205 41 AGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGT AGGCGTTGTGCGTAGAGCATCCTAGACCAGCATGCCAGTGT < 41bp 1 0.229073653116915 1 0.24809518456459 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268185 chr11:65268182 . . 0 18 hm5C_associated_SNPs_16709 0 0 1 0 0 unknown 1 0.50023152386357 1 0.999536952272861 hm5C_site_18223 DeepMRMD:1;iRNA_m5C:0.999536952272861 18224 chr11 65268182 65268182 1 + G C BLCA 65268191 + 65268171 65268211 41 TGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAG TGTGCGTAGAGCATCCTAGACCAGCATGCCAGTGTGCCAAG < 41bp 1 0.485915896191273 1 0.0559116005897522 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268191 chr11:65268182 . . 0 12 hm5C_associated_SNPs_16710 0 0 1 0 0 unknown 1 0.500231738330859 1 0.999536523338281 hm5C_site_18224 DeepMRMD:1;iRNA_m5C:0.999536523338281 18225 chr11 65268182 65268182 1 + G C BLCA 65268195 + 65268175 65268215 41 CGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCA CGTAGAGCATCCTAGACCAGCATGCCAGTGTGCCAAGGCCA < 41bp 1 0.31340880513527 1 0.0296974778175354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268195 chr11:65268182 . . 0 8 hm5C_associated_SNPs_16711 0 0 1 0 0 unknown 1 0.500231641751189 1 0.999536716497623 hm5C_site_18225 DeepMRMD:1;iRNA_m5C:0.999536716497623 18226 chr2 101622467 101622467 1 + G A BLCA 101622449 + 101622429 101622469 41 CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAG CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATAAG < 41bp 1 0.175049092229626 1 0.397925406694412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622449 chr2:101622467 nonsynonymous SNV 0.997 0 39 hm5C_associated_SNPs_16712 0 0 1 0 2 Cytosol 1 0.500231655539298 1 0.999536688921404 hm5C_site_18226 DeepMRMD:1;iRNA_m5C:0.999536688921404 18227 chr12 56536448 56536448 1 + C T BLCA 56536459 + 56536439 56536479 41 ACCAGAGCTCTCGGGGGGACCCCCTCACATCACCTCCTCAG ACCAGAGCTTTCGGGGGGACCCCCTCACATCACCTCCTCAG < 41bp 1 0.258114267651328 1 0.106501370668411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536459 chr12:56536448 synonymous SNV . 0 10 hm5C_associated_SNPs_16719 0 0 1 0 2 Endoplasmic reticulum 1 0.500231659464386 1 0.999536681071228 hm5C_site_18227 DeepMRMD:1;iRNA_m5C:0.999536681071228 18228 chr12 58114292 58114292 1 + C T BLCA 58114286 + 58114266 58114306 41 ACGAGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAG ACGAGAAACCTCAAGGAGATCTTCTTTAATATCTTGGTAAG < 41bp 1 0.412910176890431 1 0.0927506387233734 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58114286 chr12:58114292 synonymous SNV . 0 27 hm5C_associated_SNPs_16720 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18228 DeepMRMD:1;iRNA_m5C:0.999536712157815 18229 chr12 58114292 58114292 1 + C T BLCA 58114289 + 58114269 58114309 41 AGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAGAGG AGAAACCTCAAGGAGATCTTCTTTAATATCTTGGTAAGAGG < 41bp 1 0.354015883524091 1 0.404534071683884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58114289 chr12:58114292 synonymous SNV . 0 24 hm5C_associated_SNPs_16721 0 0 1 0 1 Nucleus 1 0.500231643927288 1 0.999536712145423 hm5C_site_18229 DeepMRMD:1;iRNA_m5C:0.999536712145423 18230 chr6 7581076 7581076 1 + G A BLCA 7581082 + 7581062 7581102 41 CAGGAGAGGACTGTGAAGGACCAGGATATCACGCGGTTCCA CAGGAGAGGACTGTAAAGGACCAGGATATCACGCGGTTCCA < 41bp 1 0.348838561966001 1 0.165549099445343 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581082 chr6:7581076 synonymous SNV . 0 15 hm5C_associated_SNPs_16722 0 0 1 0 0 Nucleus 1 0.500231681751847 1 0.999536636496307 hm5C_site_18230 DeepMRMD:1;iRNA_m5C:0.999536636496307 18231 chr6 7581076 7581076 1 + G A BLCA 7581095 + 7581075 7581115 41 TGAAGGACCAGGATATCACGCGGTTCCAGAACTCTCTGAAA TAAAGGACCAGGATATCACGCGGTTCCAGAACTCTCTGAAA < 41bp 1 0.149733543762164 1 0.401942193508148 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581095 chr6:7581076 synonymous SNV . 0 2 hm5C_associated_SNPs_16723 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18231 DeepMRMD:1;iRNA_m5C:0.999536712157815 18232 chr20 57480468 57480468 1 + G C BLCA 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA CAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA < 41bp 1 0.463132447104217 1 0.370701938867569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480468 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_16724 0 0 1 0 2 Cytosol 1 0.500255898724271 1 0.999488202551457 hm5C_site_18232 DeepMRMD:1;iRNA_m5C:0.999488202551457 18233 chr12 69044231 69044231 1 + G C BLCA 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCCTACGATACAAGATTCTTATAGAA < 41bp 1 0.355188918462546 1 0.336372882127762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044231 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_16725 0 0 0 0 2 Ribosome 1 0.500231635715426 1 0.999536728569148 hm5C_site_18233 DeepMRMD:1;iRNA_m5C:0.999536728569148 18234 chrX 106893251 106893251 1 + G T BLCA 106893248 + 106893228 106893268 41 CCGTTTCTTACCTATTCAGCCATGTCCCTTTATAATAGAGT CCGTTTCTTACCTATTCAGCCATTTCCCTTTATAATAGAGT < 41bp 1 0.0117776364440166 1 0.0528335571289062 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893248 chrX:106893251 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_16726 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18234 DeepMRMD:1;iRNA_m5C:0.999536712157815 18235 chrX 106893251 106893251 1 + G T BLCA 106893253 + 106893233 106893273 41 TCTTACCTATTCAGCCATGTCCCTTTATAATAGAGTAACTT TCTTACCTATTCAGCCATTTCCCTTTATAATAGAGTAACTT < 41bp 1 0.0912619669387868 1 0.0837957262992859 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893253 chrX:106893251 nonsynonymous SNV 0.999 3 19 hm5C_associated_SNPs_16727 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18235 DeepMRMD:1;iRNA_m5C:0.999536712157815 18236 chrX 70787373 70787373 1 + T C BLCA 70787359 + 70787339 70787379 41 CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGTGTACTC CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGCGTACTC < 41bp 1 0.230390086538671 1 0.060493677854538 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70787359 chrX:70787373 synonymous SNV . 0 35 hm5C_associated_SNPs_16728 0 0 1 0 1 Nucleus 1 0.500231643931309 1 0.999536712137382 hm5C_site_18236 DeepMRMD:1;iRNA_m5C:0.999536712137382 18237 chr11 67353675 67353675 1 + G T BLCA 67353680 + 67353660 67353700 41 AGACCTTCATTGTGGGAGACCAGGTGAGCATCTGGCCCCAT AGACCTTCATTGTGGTAGACCAGGTGAGCATCTGGCCCCAT < 41bp 1 0.689402559002214 1 0.61240017414093 experiment 0.621194881995571 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67353680 chr11:67353675 nonsynonymous SNV 0.926 2 16 hm5C_associated_SNPs_16729 0 0 1 0 1 Cytosol 1 0.500231654551287 0.77519965171814 0.999536690897425 hm5C_site_18237 DeepMRMD:0.77519965171814;iRNA_m5C:0.999536690897425 18238 chr13 93879779 93879779 1 + G A BLCA 93879771 + 93879751 93879791 41 GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTC GCTGCTGCTCTCCCTCCCCGCCGGGGCGAATGTGAAGGCTC < 41bp 1 0.571905645889669 1 0.838721394538879 experiment 0.856188708220661 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879771 chr13:93879779 nonsynonymous SNV 0.998 1 29 hm5C_associated_SNPs_16730 0 0 1 0 1 Ribosome 1 0.500231643918227 0.322557210922242 0.999536712163545 hm5C_site_18238 DeepMRMD:0.322557210922242;iRNA_m5C:0.999536712163545 18239 chr1 878363 878363 1 + G A BLCA 878356 + 878336 878376 41 CAAGCTCCAGCTGGAGGGGCCGGCGCCGAGGGGAAGGGGCT CAAGCTCCAGCTGGAGGGGCCGGCGCCAAGGGGAAGGGGCT < 41bp 1 0.582414480605575 1 0.643600344657898 experiment 0.835171038788851 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:878356 chr1:878363 nonsynonymous SNV 0.540 1 28 hm5C_associated_SNPs_16731 0 0 1 0 1 nucleus 1 0.500231643921092 0.712799310684204 0.999536712157815 hm5C_site_18239 DeepMRMD:0.712799310684204;iRNA_m5C:0.999536712157815 18240 chr7 148921496 148921496 1 + C G BLCA 148921485 + 148921465 148921505 41 AGACCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGG AGACCTACAGCCGTAAGGAGCACCTGCAGAAGCACCAGCGG < 41bp 1 0.349924650014743 1 0.238924562931061 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921485 chr7:148921496 nonsynonymous SNV 1.000 0 32 hm5C_associated_SNPs_16732 0 0 1 2 0 Cytosol 1 0.500231643942033 1 0.999536712115933 hm5C_site_18240 DeepMRMD:1;iRNA_m5C:0.999536712115933 18241 chr7 148921496 148921496 1 + C G BLCA 148921487 + 148921467 148921507 41 ACCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGGCT ACCTACAGCCGTAAGGAGCACCTGCAGAAGCACCAGCGGCT < 41bp 1 0.0631208813558634 1 0.183176696300507 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921487 chr7:148921496 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_16733 0 0 1 2 0 Cytosol 1 0.50023169793492 1 0.999536604130159 hm5C_site_18241 DeepMRMD:1;iRNA_m5C:0.999536604130159 18242 chr6 31516038 31516038 1 + C T BLCA 31516048 + 31516028 31516068 41 CCCAGGCCCTCCTCCAGCGACACCCAGGCCTCGATGTAGAT CCCAGGCCCTTCTCCAGCGACACCCAGGCCTCGATGTAGAT < 41bp 1 0.316557861637557 1 0.0310543775558472 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFKBIL1 ENSG00000204498;ENSG00000213760 CDS Human other chr6:31516048 chr6:31516038 nonsynonymous SNV 0.998 1 11 hm5C_associated_SNPs_16735 0 0 1 0 1 cytosol 1 0.500231533538879 1 0.999536932922242 hm5C_site_18242 DeepMRMD:1;iRNA_m5C:0.999536932922242 18243 chr11 6591874 6591874 1 + G C BLCA 6591872 + 6591852 6591892 41 AAGGGAGCTGGATGCAATGGCAGAGTGCAAGGCCCAGATGC AAGGGAGCTGGATGCAATGGCACAGTGCAAGGCCCAGATGC < 41bp 1 0.293211798513066 1 0.299270987510681 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNHD1 ENSG00000179532 CDS Human protein_coding chr11:6591872 chr11:6591874 nonsynonymous SNV 0.975 0 23 hm5C_associated_SNPs_16736 0 0 0 1 2 chromatin 1 0.500231643921079 1 0.999536712157841 hm5C_site_18243 DeepMRMD:1;iRNA_m5C:0.999536712157841 18244 chr3 62189597 62189597 1 + G C BLCA 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCGCGGGGACCGATTTTCTGAACACAGCAGA < 41bp 1 0.114565018731492 1 0.169639319181442 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189597 nonsynonymous SNV 0.997 1 33 hm5C_associated_SNPs_16737 0 0 0 0 1 Ribosome 1 0.500231643920841 1 0.999536712158318 hm5C_site_18244 DeepMRMD:1;iRNA_m5C:0.999536712158318 18245 chr18 56587297 56587297 1 + C T BLCA 56587286 + 56587266 56587306 41 GCTTTCAACAAGGTGCTGAGCAGTGTCAATCCAGTCCCTGT GCTTTCAACAAGGTGCTGAGCAGTGTCAATCTAGTCCCTGT < 41bp 1 0.449354774116965 1 0.0683876276016235 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF532 ENSG00000074657 CDS Human protein_coding chr18:56587286 chr18:56587297 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_16738 0 0 1 0 0 Cytosol 1 0.500231643491383 1 0.999536713017233 hm5C_site_18245 DeepMRMD:1;iRNA_m5C:0.999536713017233 18246 chr21 47754527 47754527 1 + A G BLCA 47754537 + 47754517 47754557 41 GTTCACAGTCAGTGACCACCCACCAGAACAGCGTGGGATGT GTTCACAGTCGGTGACCACCCACCAGAACAGCGTGGGATGT < 41bp 1 0.677413202309958 1 0.42102986574173 experiment 0.645173595380083 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47754537 chr21:47754527 nonsynonymous SNV 0.006 0 11 hm5C_associated_SNPs_16739 1 0 1 0 0 Exosome 1 0.500231519151989 1 0.999536961696022 hm5C_site_18246 DeepMRMD:1;iRNA_m5C:0.999536961696022 not specified not specified 18247 chr16 22335849 22335849 1 + T A BLCA 22335864 + 22335844 22335884 41 GGACTTCCTGGAGCACATGGCCGTGGTGAGGATCAACAAAG GGACTACCTGGAGCACATGGCCGTGGTGAGGATCAACAAAG < 41bp 1 0.290847525216769 1 0.257175892591476 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22335864 chr16:22335849 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_16740 0 0 1 0 1 Ribosome 1 0.500233028178 1 0.999533943644001 hm5C_site_18247 DeepMRMD:1;iRNA_m5C:0.999533943644001 18248 chr17 4799524 4799524 1 + G T BLCA 4799505 + 4799485 4799525 41 CAGTCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGA CAGTCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCTA < 41bp 1 0.106803864793952 1 0.070437878370285 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799505 chr17:4799524 nonsynonymous SNV 0.993 4 40 hm5C_associated_SNPs_16741 0 0 1 0 1 Ribosome 1 0.500231643921154 1 0.999536712157692 hm5C_site_18248 DeepMRMD:1;iRNA_m5C:0.999536712157692 18249 chr17 4799524 4799524 1 + G T BLCA 4799508 + 4799488 4799528 41 TCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGACCT TCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCTACCT < 41bp 1 0.134589526169609 1 0.225900620222092 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799508 chr17:4799524 nonsynonymous SNV 0.993 4 37 hm5C_associated_SNPs_16742 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_18249 DeepMRMD:1;iRNA_m5C:0.999536712157816 18250 chr3 178917576 178917576 1 + G A BLCA 178917593 + 178917573 178917613 41 GCTGTGGATCTTAGGGACCTCAATTCACCTCATAGTAGAGC GCTATGGATCTTAGGGACCTCAATTCACCTCATAGTAGAGC < 41bp 1 0.14663197153207 1 0.26962423324585 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178917593 chr3:178917576 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_16743 0 0 1 0 1 Ribosome 1 0.500231643911191 1 0.999536712177618 hm5C_site_18250 DeepMRMD:1;iRNA_m5C:0.999536712177618 18251 chr8 22065000 22065000 1 + G A BLCA 22065011 + 22064991 22065031 41 CGGTCCAGCGAAAGGGCTTCCAGGCCTCCCACGCCACAGGT CGGTCCAGCAAAAGGGCTTCCAGGCCTCCCACGCCACAGGT < 41bp 1 0.505508532878838 1 0.745674073696136 experiment 0.988982934242324 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22065011 chr8:22065000 nonsynonymous SNV 0.901 3 10 hm5C_associated_SNPs_16744 0 0 0 0 1 Endoplasmic reticulum 1 0.500231653821406 0.508651852607728 0.999536692357188 hm5C_site_18251 DeepMRMD:0.508651852607728;iRNA_m5C:0.999536692357188 18252 chr2 73476983 73476983 1 + C G BLCA 73476990 + 73476970 73477010 41 CAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCC CAGTGTGAATGCTGTGTCAGCAGATGTGCTGGGTCGATGCC < 41bp 1 0.5928891236509 1 0.375213742256165 experiment 0.814221752698201 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476990 chr2:73476983 nonsynonymous SNV 0.999 2 14 hm5C_associated_SNPs_16745 0 0 1 0 2 Cytosol 1 0.500231659352906 1 0.999536681294188 hm5C_site_18252 DeepMRMD:1;iRNA_m5C:0.999536681294188 18253 chr15 63354444 63354444 1 + G C BLCA 63354456 + 63354436 63354476 41 ATGAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG ATGAGGAACAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG < 41bp 1 0.0506826149606469 1 0.12857648730278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63354456 chr15:63354444 nonsynonymous SNV 0.996 3 9 hm5C_associated_SNPs_16746 0 0 1 0 2 Ribosome 1 0.500231643929675 1 0.999536712140651 hm5C_site_18253 DeepMRMD:1;iRNA_m5C:0.999536712140651 18254 chr5 109155380 109155380 1 + G C BLCA 109155379 + 109155359 109155399 41 ATCTTTTAAAGATCTCTTTTCGAGCACATATACCGCCATTG ATCTTTTAAAGATCTCTTTTCCAGCACATATACCGCCATTG < 41bp 1 0.0632735686964294 1 0.267178654670715 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109155379 chr5:109155380 nonsynonymous SNV 0.958 0 22 hm5C_associated_SNPs_16747 0 0 1 0 1 Cytosol 1 0.50023300704337 1 0.999533985913259 hm5C_site_18254 DeepMRMD:1;iRNA_m5C:0.999533985913259 18255 chr19 38572484 38572484 1 + G A BLCA 38572464 + 38572444 38572484 41 GCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTG GCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTA < 41bp 1 0.140521663906733 1 0.234182208776474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572464 chr19:38572484 synonymous SNV . 0 41 hm5C_associated_SNPs_16750 0 0 0 0 0 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_18255 DeepMRMD:1;iRNA_m5C:0.999536712157818 18256 chr19 38572484 38572484 1 + G A BLCA 38572465 + 38572445 38572485 41 CGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGA CGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTAA < 41bp 1 0.234256840116935 1 0.243193686008453 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572465 chr19:38572484 synonymous SNV . 0 40 hm5C_associated_SNPs_16751 0 0 0 0 0 Ribosome 1 0.50023164397404 1 0.99953671205192 hm5C_site_18256 DeepMRMD:1;iRNA_m5C:0.99953671205192 18257 chr19 38572484 38572484 1 + G A BLCA 38572467 + 38572447 38572487 41 CAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGA CAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTAAGA < 41bp 1 0.197016119050404 1 0.402707666158676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572467 chr19:38572484 synonymous SNV . 0 38 hm5C_associated_SNPs_16752 0 0 0 0 0 Ribosome 1 0.500231643921079 1 0.999536712157842 hm5C_site_18257 DeepMRMD:1;iRNA_m5C:0.999536712157842 18258 chr19 38572484 38572484 1 + G A BLCA 38572468 + 38572448 38572488 41 AAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAG AAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTAAGAG < 41bp 1 0.0648260928508157 1 0.623418211936951 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572468 chr19:38572484 synonymous SNV . 0 37 hm5C_associated_SNPs_16753 0 0 0 0 0 Ribosome 1 0.500231637650675 0.753163576126098 0.999536724698651 hm5C_site_18258 DeepMRMD:0.753163576126098;iRNA_m5C:0.999536724698651 18259 chr19 38572484 38572484 1 + G A BLCA 38572469 + 38572449 38572489 41 AGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAGA AGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTAAGAGA < 41bp 1 0.192484776841019 1 0.537373125553131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572469 chr19:38572484 synonymous SNV . 0 36 hm5C_associated_SNPs_16754 0 0 0 0 0 Ribosome 1 0.500231643921092 0.925253748893738 0.999536712157815 hm5C_site_18259 DeepMRMD:0.925253748893738;iRNA_m5C:0.999536712157815 18260 chr17 27899299 27899299 1 + C G BLCA 27899317 + 27899297 27899337 41 CTCAGCCCTGAGGTTTCCCTCTGCTTCCCCAGGGAGCTTGA CTGAGCCCTGAGGTTTCCCTCTGCTTCCCCAGGGAGCTTGA < 41bp 1 0.442981889253164 1 0.17300346493721 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TP53I13 ENSG00000167543 CDS Human protein_coding chr17:27899317 chr17:27899299 stopgain 0.005 0 3 hm5C_associated_SNPs_16755 0 0 1 0 0 chromatin 1 0.500231643921459 1 0.999536712157083 hm5C_site_18260 DeepMRMD:1;iRNA_m5C:0.999536712157083 18261 chr9 109689832 109689832 1 + G A BLCA 109689820 + 109689800 109689840 41 CGGACGGTCAAAGGGGTACTCATTCATTATCAGAAGAAGCA CGGACGGTCAAAGGGGTACTCATTCATTATCAAAAGAAGCA < 41bp 1 0.0262244272305758 1 0.0986147224903107 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109689820 chr9:109689832 synonymous SNV . 0 33 hm5C_associated_SNPs_16757 0 0 0 0 0 exosome 1 0.500231643884573 1 0.999536712230854 hm5C_site_18261 DeepMRMD:1;iRNA_m5C:0.999536712230854 18262 chr15 41192561 41192561 1 + C G BLCA 41192553 + 41192533 41192573 41 TGCAGGGCGACCCAGAGGCCCTGACTCTCTACCGAGAAACC TGCAGGGCGACCCAGAGGCCCTGACTCTGTACCGAGAAACC < 41bp 1 0.118632213608584 1 0.0754374265670776 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192553 chr15:41192561 synonymous SNV . 0 29 hm5C_associated_SNPs_16758 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18262 DeepMRMD:1;iRNA_m5C:0.999536712157815 18263 chr17 71231891 71231891 1 + G C BLCA 71231897 + 71231877 71231917 41 CCAGAACAGACAGTGAAGACCTTTCCACTGCCAGCTGTTGG CCAGAACAGACAGTCAAGACCTTTCCACTGCCAGCTGTTGG < 41bp 1 0.047033371938821 1 0.0259529650211334 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71231897 chr17:71231891 synonymous SNV . 0 15 hm5C_associated_SNPs_16759 0 0 1 0 0 chromatin 1 0.500231532117163 1 0.999536935765674 hm5C_site_18263 DeepMRMD:1;iRNA_m5C:0.999536935765674 18264 chr19 36124047 36124047 1 + G A BLCA 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCCCTCATGGGCCCCCCTCTGCCTGGGCCCCCT < 41bp 1 0.266870268490387 1 0.0687345564365387 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124047 nonsynonymous SNV 0.854 3 15 hm5C_associated_SNPs_16760 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18264 DeepMRMD:1;iRNA_m5C:0.999536712157815 18265 chr16 1559872 1559872 1 + G T BLCA 1559884 + 1559864 1559904 41 GGACGCTGGCACTGAGGGCCCTGCTGCTTCTGCAGAGACTC GGACGCTGTCACTGAGGGCCCTGCTGCTTCTGCAGAGACTC < 41bp 1 0.418102226961637 1 0.106472313404083 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1559884 chr16:1559872 nonsynonymous SNV 0.119 3 9 hm5C_associated_SNPs_16761 0 0 1 0 1 Cytosol 1 0.500231643928672 1 0.999536712142657 hm5C_site_18265 DeepMRMD:1;iRNA_m5C:0.999536712142657 18266 chr15 69737226 69737226 1 + C T BLCA 69737220 + 69737200 69737240 41 CAGATGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTG CAGATGGGTAGATCATAAGCCCGCCTTTAACATGCAAACTG < 41bp 1 0.248619084748716 1 0.057417094707489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737220 chr15:69737226 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_16762 0 0 1 0 1 Nucleus 1 0.500231643921125 1 0.99953671215775 hm5C_site_18266 DeepMRMD:1;iRNA_m5C:0.99953671215775 18267 chr15 69737226 69737226 1 + C T BLCA 69737224 + 69737204 69737244 41 TGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTGAAAC TGGGTAGATCATAAGCCCGCCTTTAACATGCAAACTGAAAC < 41bp 1 0.0905079875952112 1 0.0423241257667542 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737224 chr15:69737226 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_16763 0 0 1 0 1 Nucleus 1 0.500231643918919 1 0.999536712162161 hm5C_site_18267 DeepMRMD:1;iRNA_m5C:0.999536712162161 18268 chr6 47577018 47577018 1 + G C BLCA 47577024 + 47577004 47577044 41 TGTTGTGCATTGTAGAAGCACTGAAAAAGGATCACGGGTAA TGTTGTGCATTGTACAAGCACTGAAAAAGGATCACGGGTAA < 41bp 1 0.68191520453543 1 0.402005523443222 experiment 0.63616959092914 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47577024 chr6:47577018 nonsynonymous SNV 0.998 2 15 hm5C_associated_SNPs_16764 0 0 1 0 1 Cytosol 1 0.500231648480487 1 0.999536703039025 hm5C_site_18268 DeepMRMD:1;iRNA_m5C:0.999536703039025 18269 chr12 862795 862795 1 + G T BLCA 862789 + 862769 862809 41 CCGGTTCCCTGTTCCTCTCGCCGCCGGCTCCTGCCCCCAAG CCGGTTCCCTGTTCCTCTCGCCGCCGTCTCCTGCCCCCAAG < 41bp 1 0.200577111566451 1 0.198037505149841 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WNK1 ENSG00000060237 CDS Human protein_coding chr12:862789 chr12:862795 nonsynonymous SNV 0.983 0 27 hm5C_associated_SNPs_16766 0 0 1 0 0 Ribosome 1 0.500231643921109 1 0.999536712157782 hm5C_site_18269 DeepMRMD:1;iRNA_m5C:0.999536712157782 18270 chr1 156105709 156105709 1 + G A BLCA 156105689 + 156105669 156105709 41 CAAACCCTCCCACCCCCCTTCAGCTGGCAGCCAAGGAGGCG CAAACCCTCCCACCCCCCTTCAGCTGGCAGCCAAGGAGGCA < 41bp 1 0.162776418885243 1 0.394623577594757 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105689 chr1:156105709 synonymous SNV . 0 41 hm5C_associated_SNPs_16767 1 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18270 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 18271 chr1 156105709 156105709 1 + G A BLCA 156105721 + 156105701 156105741 41 AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCCG AAGGAGGCAAAGCTTCGAGACCTGGAGGACTCACTGGCCCG < 41bp 1 0.310599239213209 1 0.34722051024437 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105721 chr1:156105709 synonymous SNV . 0 9 hm5C_associated_SNPs_16768 1 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18271 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 18272 chr18 74639256 74639256 1 + G A BLCA 74639258 + 74639238 74639278 41 TCCAAGCATTCTGCAGCAGACGCTACAGCAGGGCAACCTAT TCCAAGCATTCTGCAGCAAACGCTACAGCAGGGCAACCTAT < 41bp 1 0.468951429183719 1 0.406246572732925 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74639258 chr18:74639256 synonymous SNV . 0 19 hm5C_associated_SNPs_16769 0 0 0 0 1 Cytosol 1 0.500231743354232 1 0.999536513291535 hm5C_site_18272 DeepMRMD:1;iRNA_m5C:0.999536513291535 18273 chr11 117152353 117152353 1 + G A BLCA 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGGAACGAAGCCAAGCTGAGCAGCCT < 41bp 1 0.409203010888349 1 0.401753097772598 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152353 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_16770 0 0 1 0 2 chromatin 1 0.500231643921089 1 0.999536712157823 hm5C_site_18273 DeepMRMD:1;iRNA_m5C:0.999536712157823 18274 chr17 7156274 7156274 1 + G C BLCA 7156261 + 7156241 7156281 41 GAGCAAGTGCATATCCTGGGCTGTGAAGTGAGCGAGGAAGA GAGCAAGTGCATATCCTGGGCTGTGAAGTGAGCCAGGAAGA < 41bp 1 0.287436275120083 1 0.0857960283756256 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ELP5 ENSG00000170291 CDS Human protein_coding chr17:7156261 chr17:7156274 nonsynonymous SNV 0.945 3 34 hm5C_associated_SNPs_16771 0 0 1 0 2 Cytosol 1 0.500231645720252 1 0.999536708559497 hm5C_site_18274 DeepMRMD:1;iRNA_m5C:0.999536708559497 18275 chr1 23208857 23208857 1 + T C BLCA 23208855 + 23208835 23208875 41 TCTGGCCTCTCTTCCAGCTCCATCGGCAGTGTCCATCATGC TCTGGCCTCTCTTCCAGCTCCACCGGCAGTGTCCATCATGC < 41bp 1 0.403501838634533 1 0.0751026570796967 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23208855 chr1:23208857 nonsynonymous SNV 0.900 3 23 hm5C_associated_SNPs_16772 0 0 0 0 1 Endoplasmic reticulum 1 0.500234200101329 1 0.999531599797342 hm5C_site_18275 DeepMRMD:1;iRNA_m5C:0.999531599797342 18276 chr19 2249452 2249452 1 + G A BLCA 2249433 + 2249413 2249453 41 GAGGAGCCAGCTGTGGGCACCAGTGGCCTCATCTTCCGAGA GAGGAGCCAGCTGTGGGCACCAGTGGCCTCATCTTCCGAAA < 41bp 1 0.417074276158488 1 0.598136603832245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AMH ENSG00000104899 CDS Human protein_coding chr19:2249433 chr19:2249452 nonsynonymous SNV 0.001 1 40 hm5C_associated_SNPs_16773 0 0 1 0 0 exosome 1 0.500231641941751 0.80372679233551 0.999536716116498 hm5C_site_18276 DeepMRMD:0.80372679233551;iRNA_m5C:0.999536716116498 18277 chr17 80676928 80676928 1 + G C BLCA 80676908 + 80676888 80676928 41 GGAGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTG GGAGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTC < 41bp 1 0.499812819027647 1 0.0639490485191345 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80676908 chr17:80676928 synonymous SNV . 0 41 hm5C_associated_SNPs_16774 0 0 1 0 1 Ribosome 1 0.500231643980897 1 0.999536712038206 hm5C_site_18277 DeepMRMD:1;iRNA_m5C:0.999536712038206 18278 chr17 80676928 80676928 1 + G C BLCA 80676910 + 80676890 80676930 41 AGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTGAG AGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTCAG < 41bp 1 0.647460977981775 1 0.256482243537903 experiment 0.705078044036451 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80676910 chr17:80676928 synonymous SNV . 0 39 hm5C_associated_SNPs_16775 0 0 1 0 1 Ribosome 1 0.500231650922739 1 0.999536698154523 hm5C_site_18278 DeepMRMD:1;iRNA_m5C:0.999536698154523 18279 chr12 56531979 56531979 1 + G C BLCA 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG CAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG < 41bp 1 0.0489172124743826 1 0.536650359630585 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56531979 nonsynonymous SNV 0.998 2 1 hm5C_associated_SNPs_16776 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164392097 0.92669928073883 0.999536712158061 hm5C_site_18279 DeepMRMD:0.92669928073883;iRNA_m5C:0.999536712158061 18280 chr19 42373788 42373788 1 + C T BLCA 42373769 + 42373749 42373789 41 TGACCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTCA TGACCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTTA < 41bp 1 0.249318371754424 1 0.393706470727921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373769 chr19:42373788 stopgain 1.000 1 40 hm5C_associated_SNPs_16777 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18280 DeepMRMD:1;iRNA_m5C:0.999536712157815 18281 chr19 42373788 42373788 1 + C T BLCA 42373772 + 42373752 42373792 41 CCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTCAGGG CCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTTAGGG < 41bp 1 0.189920364883134 1 0.245908468961716 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373772 chr19:42373788 stopgain 1.000 1 37 hm5C_associated_SNPs_16778 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_18281 DeepMRMD:1;iRNA_m5C:0.999536712157815 18282 chr19 42373788 42373788 1 + C T BLCA 42373779 + 42373759 42373799 41 CTCCCCACAGCGGCCGCAAACTGACACCTCAGGGACAAAGA CTCCCCACAGCGGCCGCAAACTGACACCTTAGGGACAAAGA < 41bp 1 0.299013950887939 1 0.322599530220032 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373779 chr19:42373788 stopgain 1.000 1 30 hm5C_associated_SNPs_16779 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18282 DeepMRMD:1;iRNA_m5C:0.999536712157815 18283 chr19 42373788 42373788 1 + C T BLCA 42373785 + 42373765 42373805 41 ACAGCGGCCGCAAACTGACACCTCAGGGACAAAGAGATCTG ACAGCGGCCGCAAACTGACACCTTAGGGACAAAGAGATCTG < 41bp 1 0.141478190238317 1 0.0475406646728516 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373785 chr19:42373788 stopgain 1.000 1 24 hm5C_associated_SNPs_16780 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18283 DeepMRMD:1;iRNA_m5C:0.999536712157815 18284 chr19 42373788 42373788 1 + C T BLCA 42373794 + 42373774 42373814 41 GCAAACTGACACCTCAGGGACAAAGAGATCTGGACAGAATC GCAAACTGACACCTTAGGGACAAAGAGATCTGGACAGAATC < 41bp 1 0.275675334070707 1 0.333170115947723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373794 chr19:42373788 stopgain 1.000 1 15 hm5C_associated_SNPs_16781 0 0 1 0 2 Cytosol 1 0.50023164392406 1 0.999536712151881 hm5C_site_18284 DeepMRMD:1;iRNA_m5C:0.999536712151881 18285 chr19 42373788 42373788 1 + C T BLCA 42373808 + 42373788 42373828 41 CAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTAAG TAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTAAG < 41bp 1 0.612051621551133 1 0.279759407043457 experiment 0.775896756897734 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373808 chr19:42373788 stopgain 1.000 1 1 hm5C_associated_SNPs_16782 0 0 1 0 2 Cytosol 1 0.500231643919598 1 0.999536712160803 hm5C_site_18285 DeepMRMD:1;iRNA_m5C:0.999536712160803 18286 chr17 57918683 57918683 1 + G C BLCA 57918672 + 57918652 57918692 41 TTGACTGTTGAATCTCATGGCAACACCAGTCGATGGGCTGT TTGACTGTTGAATCTCATGGCAACACCAGTCCATGGGCTGT < 41bp 1 0.620985287883733 1 0.229179203510284 experiment 0.758029424232534 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control MIR21 ENSG00000199004 ncRNA_exonic Human other chr17:57918672 chr17:57918683 . . 0 32 hm5C_associated_SNPs_16783 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_18286 DeepMRMD:1;iRNA_m5C:0.999536712157816 18287 chr9 140136952 140136952 1 + G C BLCA 140136939 + 140136919 140136959 41 GACAAATGATTAGCTGTGTTCTCTCACAGGTCAGAGTGGTG GACAAATGATTAGCTGTGTTCTCTCACAGGTCACAGTGGTG < 41bp 1 0.211215483401261 1 0.105487614870071 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140136939 chr9:140136952 nonsynonymous SNV 0.986 1 34 hm5C_associated_SNPs_16785 0 0 1 0 1 Cytosol 1 0.500231643911428 1 0.999536712177144 hm5C_site_18287 DeepMRMD:1;iRNA_m5C:0.999536712177144 18288 chr9 140136952 140136952 1 + G C BLCA 140136941 + 140136921 140136961 41 CAAATGATTAGCTGTGTTCTCTCACAGGTCAGAGTGGTGCT CAAATGATTAGCTGTGTTCTCTCACAGGTCACAGTGGTGCT < 41bp 1 0.362028670901961 1 0.169688105583191 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140136941 chr9:140136952 nonsynonymous SNV 0.986 1 32 hm5C_associated_SNPs_16786 0 0 1 0 1 Cytosol 1 0.500231591580155 1 0.999536816839689 hm5C_site_18288 DeepMRMD:1;iRNA_m5C:0.999536816839689 18289 chr1 220964944 220964944 1 + C T BLCA 220964927 + 220964907 220964947 41 TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCTAC TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCTTAC < 41bp 1 0.407884738552923 1 0.104949444532394 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964927 chr1:220964944 synonymous SNV . 0 38 hm5C_associated_SNPs_16787 0 0 1 0 1 Ribosome 1 0.500228764520675 1 0.999542470958649 hm5C_site_18289 DeepMRMD:1;iRNA_m5C:0.999542470958649 18290 chr2 9528444 9528444 1 + G A BLCA 9528446 + 9528426 9528466 41 AGTCCCAACCGGCGGGAAGACCGGCCCATCAGCTTCTACCA AGTCCCAACCGGCGGGAAAACCGGCCCATCAGCTTCTACCA < 41bp 1 0.510281816157412 1 0.451862007379532 experiment 0.979436367685176 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9528446 chr2:9528444 nonsynonymous SNV 0.990 0 19 hm5C_associated_SNPs_16789 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18290 DeepMRMD:1;iRNA_m5C:0.999536712157815 18291 chr1 44083216 44083216 1 + G C BLCA 44083229 + 44083209 44083249 41 CACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG CACTCTCCAGTCATCCTTACCTCTATCGATGGTGAGCCAAG < 41bp 1 0.32449430208038 1 0.764552533626556 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083229 chr1:44083216 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_16791 0 0 0 0 1 Ribosome 1 0.500231643926511 0.470894932746888 0.999536712146978 hm5C_site_18291 DeepMRMD:0.470894932746888;iRNA_m5C:0.999536712146978 18292 chr1 26158516 26158516 1 + G A BLCA 26158523 + 26158503 26158543 41 AGAAAAGGAAATTGACAACCCTCAGCTCTGCAAACTCAGTC AGAAAAGGAAATTAACAACCCTCAGCTCTGCAAACTCAGTC < 41bp 1 0.490510980560373 1 0.125117927789688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTFR1L ENSG00000117640 CDS Human protein_coding chr1:26158523 chr1:26158516 synonymous SNV . 0 14 hm5C_associated_SNPs_16792 0 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18292 DeepMRMD:1;iRNA_m5C:0.999536712157815 18293 chr5 179263587 179263587 1 + G A BLCA 179263583 + 179263563 179263603 41 CCAGTATTCAAAGCATCCCCCGCCGTTGTGACCACTTTTGC CCAGTATTCAAAGCATCCCCCGCCATTGTGACCACTTTTGC < 41bp 1 0.600727839916025 1 0.719185769557953 experiment 0.798544320167949 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SQSTM1 ENSG00000161011 CDS Human protein_coding chr5:179263583 chr5:179263587 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_16793 0 0 1 0 0 Ribosome 1 0.500231643921098 0.561628460884094 0.999536712157803 hm5C_site_18293 DeepMRMD:0.561628460884094;iRNA_m5C:0.999536712157803 18294 chr17 4859385 4859385 1 + C A BLCA 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCCGTTGAGAAGAAGGCCTGCAAATGTCTGCTGCTGA < 41bp 1 0.136669842101232 1 0.0846039354801178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859385 nonsynonymous SNV 0.973 2 28 hm5C_associated_SNPs_16794 0 0 1 0 2 nucleus 1 0.500231642718923 1 0.999536714562154 hm5C_site_18294 DeepMRMD:1;iRNA_m5C:0.999536714562154 18295 chr17 4859385 4859385 1 + C A BLCA 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCGTTGAGAAGAAGGCCTGCAAATGTCTGCTGCTGAAGGT < 41bp 1 0.433432536147316 1 0.201324671506882 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859385 nonsynonymous SNV 0.973 2 24 hm5C_associated_SNPs_16796 0 0 1 0 2 nucleus 1 0.500231643922574 1 0.999536712154852 hm5C_site_18295 DeepMRMD:1;iRNA_m5C:0.999536712154852 18296 chr17 4859385 4859385 1 + C A BLCA 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGCAAATGTCTGCTGCTGAAGGTCAACCAGATC < 41bp 1 0.380196841518047 1 0.122078061103821 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859385 nonsynonymous SNV 0.973 2 14 hm5C_associated_SNPs_16798 0 0 1 0 2 nucleus 1 0.500231886574707 1 0.999536226850585 hm5C_site_18296 DeepMRMD:1;iRNA_m5C:0.999536226850585 18297 chr17 4859385 4859385 1 + C A BLCA 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AAATGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC < 41bp 1 0.400706873601246 1 0.22324326634407 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859385 nonsynonymous SNV 0.973 2 3 hm5C_associated_SNPs_16799 0 0 1 0 2 nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_18297 DeepMRMD:1;iRNA_m5C:0.999536712157815 18298 chr6 161470185 161470185 1 + T C BLCA 161470199 + 161470179 161470219 41 CAGATATTATTAATGAAATCCTTACTTTCAAAGTCGACTAT CAGATACTATTAATGAAATCCTTACTTTCAAAGTCGACTAT < 41bp 1 0.0723970627460784 1 0.0492531657218933 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161470199 chr6:161470185 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_16800 0 0 1 1 0 Cytosol 1 0.500231643965806 1 0.999536712068387 hm5C_site_18298 DeepMRMD:1;iRNA_m5C:0.999536712068387 18299 chr14 61997290 61997290 1 + G C BLCA 61997276 + 61997256 61997296 41 TGATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA TGATGAGGTGGTCTACCCTACCTGGCTCCATGAACATGCCA < 41bp 1 0.122356696244432 1 0.102210938930511 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997276 chr14:61997290 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_16801 0 0 0 0 1 Cytosol 1 0.50023164392135 1 0.9995367121573 hm5C_site_18299 DeepMRMD:1;iRNA_m5C:0.9995367121573 18300 chr19 10789861 10789861 1 + G A BLCA 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCGCGTGCCCACCTGGGGTCCCCTCCAAGGCTGGGTAAGG < 41bp 1 0.0768887030030459 1 0.0741359889507294 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789861 nonsynonymous SNV 0.996 3 28 hm5C_associated_SNPs_16802 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18300 DeepMRMD:1;iRNA_m5C:0.999536712157815 18301 chr19 10789861 10789861 1 + G A BLCA 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCGCGTGCCCACCTGGGGTCCCCTCCAAGGCTGGGTAAGGC < 41bp 1 0.036576578329758 1 0.160623967647552 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789861 nonsynonymous SNV 0.996 3 27 hm5C_associated_SNPs_16803 0 0 1 0 2 Cytosol 1 0.500231643921431 1 0.999536712157137 hm5C_site_18301 DeepMRMD:1;iRNA_m5C:0.999536712157137 18302 chr11 117152348 117152348 1 + G T BLCA 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGTAACGGAGCCAAGCTGAGCAGCCT < 41bp 1 0.664667946429689 1 0.670540988445282 experiment 0.670664107140623 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152348 nonsynonymous SNV 0.992 3 18 hm5C_associated_SNPs_16804 0 0 1 0 2 chromatin 1 0.500231643921092 0.658918023109436 0.999536712157815 hm5C_site_18302 DeepMRMD:0.658918023109436;iRNA_m5C:0.999536712157815 18303 chr16 31487420 31487420 1 + G C BLCA 31487435 + 31487415 31487455 41 TCTTCGAGAAGGATGGAGCCCCCTTCTGCCCCGAGTGCTAC TCTTCCAGAAGGATGGAGCCCCCTTCTGCCCCGAGTGCTAC < 41bp 1 0.102728084458947 1 0.0356359779834747 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31487435 chr16:31487420 nonsynonymous SNV 0.998 5 6 hm5C_associated_SNPs_16805 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18303 DeepMRMD:1;iRNA_m5C:0.999536712157815 18304 chr1 33237296 33237296 1 + C T BLCA 33237305 + 33237285 33237325 41 TCCTCCAGCTCCGCCAGCCCCAGCTCCTGCTAGTTCCGCCC TCCTCCAGCTCTGCCAGCCCCAGCTCCTGCTAGTTCCGCCC < 41bp 1 0.325419922011969 1 0.461450517177582 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33237305 chr1:33237296 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_16807 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18304 DeepMRMD:1;iRNA_m5C:0.999536712157815 18305 chr1 153750361 153750361 1 + G A BLCA 153750343 + 153750323 153750363 41 ATTGGGGAGCTGTGCCGATACCTTGTCAACCAGCCCCCGGT ATTGGGGAGCTGTGCCGATACCTTGTCAACCAGCCCCCAGT < 41bp 1 0.204658768106387 1 0.0836926400661469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750343 chr1:153750361 synonymous SNV . 0 39 hm5C_associated_SNPs_16808 0 0 0 0 1 nucleoplasm 1 0.500231643928667 1 0.999536712142667 hm5C_site_18305 DeepMRMD:1;iRNA_m5C:0.999536712142667 18306 chr4 6642857 6642857 1 + G T BLCA 6642867 + 6642847 6642887 41 CGACGCGGCCGAGGGCCGGGCGGCCAAGAGGTGCGAGAAGG CGACGCGGCCTAGGGCCGGGCGGCCAAGAGGTGCGAGAAGG < 41bp 1 0.581256900649669 1 0.525231719017029 experiment 0.837486198700662 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRFAP1 ENSG00000179010 CDS Human protein_coding chr4:6642867 chr4:6642857 stopgain 0.002 0 11 hm5C_associated_SNPs_16810 0 0 1 0 0 Ribosome 1 0.500231643921092 0.949536561965942 0.999536712157815 hm5C_site_18306 DeepMRMD:0.949536561965942;iRNA_m5C:0.999536712157815 18307 chr4 6642857 6642857 1 + G T BLCA 6642870 + 6642850 6642890 41 CGCGGCCGAGGGCCGGGCGGCCAAGAGGTGCGAGAAGGCCG CGCGGCCTAGGGCCGGGCGGCCAAGAGGTGCGAGAAGGCCG < 41bp 1 0.316155351338744 1 0.578642189502716 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRFAP1 ENSG00000179010 CDS Human protein_coding chr4:6642870 chr4:6642857 stopgain 0.002 0 8 hm5C_associated_SNPs_16811 0 0 1 0 0 Ribosome 1 0.500231713852475 0.842715620994568 0.999536572295049 hm5C_site_18307 DeepMRMD:0.842715620994568;iRNA_m5C:0.999536572295049 18308 chr16 28970119 28970119 1 + G C BLCA 28970135 + 28970115 28970155 41 TGGAGAGACAGAGCTATCACCTACTGCCACTCCCAGGACCC TGGACAGACAGAGCTATCACCTACTGCCACTCCCAGGACCC < 41bp 1 0.453250974530526 1 0.032698005437851 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28970135 chr16:28970119 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_16812 0 0 1 0 2 Ribosome 1 0.500231643933239 1 0.999536712133521 hm5C_site_18308 DeepMRMD:1;iRNA_m5C:0.999536712133521 18309 chr10 115489207 115489207 1 + G C BLCA 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGCCAGGCACTTTCAGTCTCAGT < 41bp 1 0.280853064956167 1 0.1108618080616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489207 nonsynonymous SNV 0.995 3 32 hm5C_associated_SNPs_16813 0 0 1 9 0 Ribosome 1 0.500232670287036 1 0.999534659425928 hm5C_site_18309 DeepMRMD:1;iRNA_m5C:0.999534659425928 18310 chr12 27908150 27908150 1 + G C BLCA 27908142 + 27908122 27908162 41 AGAATGGGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGT AGAATGGGAAAAAAGTAAGACTGAAGCACACATGGAAGAGT < 41bp 1 0.578468714311282 1 0.514430165290833 experiment 0.843062571377436 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908142 chr12:27908150 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_16814 0 0 1 1 1 Ribosome 1 0.500231643373412 0.971139669418334 0.999536713253176 hm5C_site_18310 DeepMRMD:0.971139669418334;iRNA_m5C:0.999536713253176 18311 chr12 27908150 27908150 1 + G C BLCA 27908148 + 27908128 27908168 41 GGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGTATATAT GGAAAAAAGTAAGACTGAAGCACACATGGAAGAGTATATAT < 41bp 1 0.45793985459062 1 0.454443901777267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908148 chr12:27908150 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_16815 0 0 1 1 1 Ribosome 1 0.500231643882483 1 0.999536712235034 hm5C_site_18311 DeepMRMD:1;iRNA_m5C:0.999536712235034 18312 chr1 874759 874759 1 + C T BLCA 874779 + 874759 874799 41 CAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA TAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA < 41bp 1 0.0765679415018719 1 0.0606614947319031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874779 chr1:874759 stopgain 0.942 1 1 hm5C_associated_SNPs_16816 0 0 0 0 2 nucleus 1 0.500231643921133 1 0.999536712157735 hm5C_site_18312 DeepMRMD:1;iRNA_m5C:0.999536712157735 18313 chr6 33172455 33172455 1 + C G BLCA 33172450 + 33172430 33172470 41 CCACCCACAGCCCGCCATGGCGTCTCAGCTCCAGAACCGAC CCACCCACAGCCCGCCATGGCGTCTGAGCTCCAGAACCGAC < 41bp 1 0.19540983687017 1 0.102204293012619 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSD17B8 ENSG00000204228 CDS Human protein_coding chr6:33172450 chr6:33172455 nonsynonymous SNV 0.997 0 26 hm5C_associated_SNPs_16817 0 0 1 0 1 Ribosome 1 0.500231643740232 1 0.999536712519536 hm5C_site_18313 DeepMRMD:1;iRNA_m5C:0.999536712519536 18314 chr15 22993125 22993125 1 + C T BLCA 22993126 + 22993106 22993146 41 GGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGAG GGGAGGTGGGGAACGCCATTCTCTTCTGCCTGCTCATCGAG < 41bp 1 0.480835170107808 1 0.377755969762802 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993126 chr15:22993125 synonymous SNV . 0 20 hm5C_associated_SNPs_16818 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_18314 DeepMRMD:1;iRNA_m5C:0.999536712157812 18315 chr16 697470 697470 1 + C T BLCA 697463 + 697443 697483 41 GTGTGAATGGCCGGCGGGCCCCCTCCACGTCCCCATCCTTC GTGTGAATGGCCGGCGGGCCCCCTCCATGTCCCCATCCTTC < 41bp 1 0.12016984133231 1 0.0445164442062378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697463 chr16:697470 nonsynonymous SNV 0.042 0 28 hm5C_associated_SNPs_16820 0 0 1 0 1 Cytosol 1 0.500231646122197 1 0.999536707755605 hm5C_site_18315 DeepMRMD:1;iRNA_m5C:0.999536707755605 18316 chr21 45222172 45222172 1 + G C BLCA 45222163 + 45222143 45222183 41 CCTGGTTCTCAGGCATTTTCCCTGAAGATGAGATCCCAGAG CCTGGTTCTCAGGCATTTTCCCTGAAGATCAGATCCCAGAG < 41bp 1 0.647037920837462 1 0.348154246807098 experiment 0.705924158325076 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45222163 chr21:45222172 nonsynonymous SNV 0.007 1 30 hm5C_associated_SNPs_16821 0 0 1 0 2 Ribosome 1 0.500231648047501 1 0.999536703904999 hm5C_site_18316 DeepMRMD:1;iRNA_m5C:0.999536703904999 18317 chr20 34092600 34092600 1 + G C BLCA 34092606 + 34092586 34092626 41 AAACCTCCCCAATGGAGGAACAATCTCTAAAACTTGATTCT AAACCTCCCCAATGCAGGAACAATCTCTAAAACTTGATTCT < 41bp 1 0.0317093822842913 1 0.0377832651138306 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP250 ENSG00000126001 CDS Human protein_coding chr20:34092606 chr20:34092600 nonsynonymous SNV 0.019 1 15 hm5C_associated_SNPs_16822 0 0 1 0 0 Cytosol 1 0.500231548278517 1 0.999536903442965 hm5C_site_18317 DeepMRMD:1;iRNA_m5C:0.999536903442965 18318 chr12 27788022 27788022 1 + C G BLCA 27788020 + 27788000 27788040 41 CCCAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCAGA CCCAGATTCAACAGCAGAAACGGTTGTTGAATGGCTTCAGA < 41bp 1 0.391962270366767 1 0.14746367931366 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27788020 chr12:27788022 nonsynonymous SNV 0.095 2 23 hm5C_associated_SNPs_16823 0 0 1 0 1 Nucleus 1 0.500231621848461 1 0.999536756303078 hm5C_site_18318 DeepMRMD:1;iRNA_m5C:0.999536756303078 18319 chr10 14909867 14909867 1 + G C BLCA 14909880 + 14909860 14909900 41 TGAGTCTGATGGGAAGAACTCTGCCAAAGAGGAAACCAAGT TGAGTCTCATGGGAAGAACTCTGCCAAAGAGGAAACCAAGT < 41bp 1 0.261756810531346 1 0.134808361530304 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HSPA14 ENSG00000187522 CDS Human protein_coding chr10:14909880 chr10:14909867 nonsynonymous SNV 0.975 1 8 hm5C_associated_SNPs_16824 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18319 DeepMRMD:1;iRNA_m5C:0.999536712157815 18320 chr16 31470893 31470893 1 + C T BLCA 31470910 + 31470890 31470930 41 CCTCGCGCAGCTCGCGGCGGCGGCCGGGGAGGCTCTGGGTG CCTTGCGCAGCTCGCGGCGGCGGCCGGGGAGGCTCTGGGTG < 41bp 1 0.454562523916599 1 0.667645931243896 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31470910 chr16:31470893 synonymous SNV . 0 4 hm5C_associated_SNPs_16825 0 0 1 0 0 cytosol 1 0.500231643921092 0.664708137512208 0.999536712157815 hm5C_site_18320 DeepMRMD:0.664708137512208;iRNA_m5C:0.999536712157815 18321 chrX 129149535 129149535 1 + G A BLCA 129149555 + 129149535 129149575 41 GACTGGGACCCTGGCACTGTCTGTTCAGCCTAGCGGTGGGG AACTGGGACCCTGGCACTGTCTGTTCAGCCTAGCGGTGGGG < 41bp 1 0.163468088835684 1 0.0873195230960846 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129149555 chrX:129149535 synonymous SNV . 0 1 hm5C_associated_SNPs_16826 0 0 1 0 0 Cytosol 1 0.500231642630401 1 0.999536714739199 hm5C_site_18321 DeepMRMD:1;iRNA_m5C:0.999536714739199 18322 chr1 109643217 109643217 1 + G C BLCA 109643200 + 109643180 109643220 41 TAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGG TAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGG < 41bp 1 0.553904505851117 1 0.552452385425568 experiment 0.892190988297765 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643200 chr1:109643217 . . 0 38 hm5C_associated_SNPs_16828 0 0 1 2 0 unknown 1 0.500231663986481 0.895095229148864 0.999536672027038 hm5C_site_18322 DeepMRMD:0.895095229148864;iRNA_m5C:0.999536672027038 18323 chr1 109643217 109643217 1 + G C BLCA 109643201 + 109643181 109643221 41 AGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGC AGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGGC < 41bp 1 0.592801187111848 1 0.903638482093811 experiment 0.814397625776303 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643201 chr1:109643217 . . 0 37 hm5C_associated_SNPs_16829 0 0 1 2 0 unknown 1 0.500231643921092 0.192723035812378 0.999536712157815 hm5C_site_18323 DeepMRMD:0.192723035812378;iRNA_m5C:0.999536712157815 18324 chr1 109643217 109643217 1 + G C BLCA 109643202 + 109643182 109643222 41 GACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCG GACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGGCG < 41bp 1 0.462553878250647 1 0.736834049224854 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643202 chr1:109643217 . . 0 36 hm5C_associated_SNPs_16830 0 0 1 2 0 unknown 1 0.500231646173397 0.526331901550292 0.999536707653206 hm5C_site_18324 DeepMRMD:0.526331901550292;iRNA_m5C:0.999536707653206 18325 chr1 109643217 109643217 1 + G C BLCA 109643205 + 109643185 109643225 41 GAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATT GAGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGGCGATT < 41bp 1 0.0774856077026185 1 0.0838050842285156 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643205 chr1:109643217 . . 0 33 hm5C_associated_SNPs_16831 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_18325 DeepMRMD:1;iRNA_m5C:0.999536712157815 18326 chr1 109643217 109643217 1 + G C BLCA 109643206 + 109643186 109643226 41 AGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATTC AGGCCGGGCTTGTCCCCGGCCACTGATTATCCAGGCGATTC < 41bp 1 0.354482229573776 1 0.0278176665306091 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643206 chr1:109643217 . . 0 32 hm5C_associated_SNPs_16832 0 0 1 2 0 unknown 1 0.500231648546239 1 0.999536702907521 hm5C_site_18326 DeepMRMD:1;iRNA_m5C:0.999536702907521 18327 chr1 109643217 109643217 1 + G C BLCA 109643208 + 109643188 109643228 41 GCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATTCTG GCCGGGCTTGTCCCCGGCCACTGATTATCCAGGCGATTCTG < 41bp 1 0.526340458138631 1 0.0626833736896515 experiment 0.947319083722739 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643208 chr1:109643217 . . 0 30 hm5C_associated_SNPs_16833 0 0 1 2 0 unknown 1 0.500231646042051 1 0.999536707915899 hm5C_site_18327 DeepMRMD:1;iRNA_m5C:0.999536707915899 18328 chr1 109643217 109643217 1 + G C BLCA 109643221 + 109643201 109643241 41 CCGGCCACTGATTATCGAGGCGATTCTGATCTGGGCACGGC CCGGCCACTGATTATCCAGGCGATTCTGATCTGGGCACGGC < 41bp 1 0.265351589666251 1 0.374196976423264 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643221 chr1:109643217 . . 0 17 hm5C_associated_SNPs_16834 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_18328 DeepMRMD:1;iRNA_m5C:0.999536712157815 18329 chr1 109643217 109643217 1 + G C BLCA 109643226 + 109643206 109643246 41 CACTGATTATCGAGGCGATTCTGATCTGGGCACGGCCACCG CACTGATTATCCAGGCGATTCTGATCTGGGCACGGCCACCG < 41bp 1 0.616393123303669 1 0.0527658462524414 experiment 0.767213753392662 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643226 chr1:109643217 . . 0 12 hm5C_associated_SNPs_16835 0 0 1 2 0 unknown 1 0.500231643921094 1 0.999536712157813 hm5C_site_18329 DeepMRMD:1;iRNA_m5C:0.999536712157813 18330 chr7 142459637 142459637 1 + G A BLCA 142459625 + 142459605 142459645 41 ATGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGG ATGCCTGCCCTGCCCATCAGCCGCATCCAGGTAAGACTGGG < 41bp 1 0.498000808503156 1 0.325556576251984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459625 chr7:142459637 synonymous SNV . 0 33 hm5C_associated_SNPs_16836 0 0 0 0 1 Cytosol 1 0.500231643940633 1 0.999536712118735 hm5C_site_18330 DeepMRMD:1;iRNA_m5C:0.999536712118735 18331 chr7 142459637 142459637 1 + G A BLCA 142459626 + 142459606 142459646 41 TGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGA TGCCTGCCCTGCCCATCAGCCGCATCCAGGTAAGACTGGGA < 41bp 1 0.316073897748931 1 0.375292360782623 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459626 chr7:142459637 synonymous SNV . 0 32 hm5C_associated_SNPs_16837 0 0 0 0 1 Cytosol 1 0.500231643889381 1 0.999536712221238 hm5C_site_18331 DeepMRMD:1;iRNA_m5C:0.999536712221238 18332 chr7 142459637 142459637 1 + G A BLCA 142459628 + 142459608 142459648 41 CCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGA CCTGCCCTGCCCATCAGCCGCATCCAGGTAAGACTGGGAGA < 41bp 1 0.2538153918004 1 0.139163643121719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459628 chr7:142459637 synonymous SNV . 0 30 hm5C_associated_SNPs_16838 0 0 0 0 1 Cytosol 1 0.500231643886645 1 0.99953671222671 hm5C_site_18332 DeepMRMD:1;iRNA_m5C:0.99953671222671 18333 chr7 142459637 142459637 1 + G A BLCA 142459631 + 142459611 142459651 41 GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCA GCCCTGCCCATCAGCCGCATCCAGGTAAGACTGGGAGAGCA < 41bp 1 0.58100227346845 1 0.796656548976898 experiment 0.837995453063099 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459631 chr7:142459637 synonymous SNV . 0 27 hm5C_associated_SNPs_16839 0 0 0 0 1 Cytosol 1 0.500229013667517 0.406686902046204 0.999541972664966 hm5C_site_18333 DeepMRMD:0.406686902046204;iRNA_m5C:0.999541972664966 18334 chr7 142459637 142459637 1 + G A BLCA 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTAAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA < 41bp 1 0.686347732464636 1 0.137504130601883 experiment 0.627304535070727 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459637 synonymous SNV . 0 3 hm5C_associated_SNPs_16841 0 0 0 0 1 Cytosol 1 0.500231643921224 1 0.999536712157551 hm5C_site_18334 DeepMRMD:1;iRNA_m5C:0.999536712157551 18335 chr1 12364770 12364770 1 + G C BLCA 12364755 + 12364735 12364775 41 AGCAAGGGCCGCAACCCACACTGTCTGTTGGCCAAGAGTCC AGCAAGGGCCGCAACCCACACTGTCTGTTGGCCAACAGTCC < 41bp 1 0.0604839061279629 1 0.0676746964454651 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12364755 chr1:12364770 nonsynonymous SNV 0.281 0 36 hm5C_associated_SNPs_16842 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18335 DeepMRMD:1;iRNA_m5C:0.999536712157815 18336 chr7 128407602 128407602 1 + G A BLCA 128407598 + 128407578 128407618 41 GTTGAGTTTCGGGATAAGAACCGTGATGGGAAGATGGACAA GTTGAGTTTCGGGATAAGAACCGTAATGGGAAGATGGACAA < 41bp 1 0.654714529178493 1 0.0463862121105194 experiment 0.690570941643014 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALU ENSG00000128595 CDS Human protein_coding chr7:128407598 chr7:128407602 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_16843 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18336 DeepMRMD:1;iRNA_m5C:0.999536712157815 18337 chr7 128407602 128407602 1 + G A BLCA 128407599 + 128407579 128407619 41 TTGAGTTTCGGGATAAGAACCGTGATGGGAAGATGGACAAG TTGAGTTTCGGGATAAGAACCGTAATGGGAAGATGGACAAG < 41bp 1 0.633757563779847 1 0.255654573440552 experiment 0.732484872440306 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALU ENSG00000128595 CDS Human protein_coding chr7:128407599 chr7:128407602 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_16844 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18337 DeepMRMD:1;iRNA_m5C:0.999536712157815 18338 chr9 140166654 140166654 1 + C T BLCA 140166668 + 140166648 140166688 41 TGGCTTCTTCCTCACCGCCTCTCCAAGGTAGGCCTGCTGGG TGGCTTTTTCCTCACCGCCTCTCCAAGGTAGGCCTGCTGGG < 41bp 1 0.663035299110931 1 0.928530931472778 experiment 0.673929401778138 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140166668 chr9:140166654 synonymous SNV . 0 7 hm5C_associated_SNPs_16845 0 0 1 0 1 Ribosome 1 0.500231527683522 0.142938137054444 0.999536944632957 hm5C_site_18338 DeepMRMD:0.142938137054444;iRNA_m5C:0.999536944632957 18339 chr19 13051185 13051185 1 + G A BLCA 13051171 + 13051151 13051191 41 TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAG TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAAATAAAG < 41bp 1 0.328975662000995 1 0.209674388170242 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051171 chr19:13051185 synonymous SNV . 0 35 hm5C_associated_SNPs_16846 0 0 1 0 1 Ribosome 1 0.500231643914784 1 0.999536712170433 hm5C_site_18339 DeepMRMD:1;iRNA_m5C:0.999536712170433 18340 chr19 13051185 13051185 1 + G A BLCA 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTCCTGCCACCCAAGAAAATAAAGGATC < 41bp 1 0.38814611835477 1 0.134268015623093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051185 synonymous SNV . 0 31 hm5C_associated_SNPs_16847 0 0 1 0 1 Ribosome 1 0.50023164315137 1 0.999536713697259 hm5C_site_18340 DeepMRMD:1;iRNA_m5C:0.999536713697259 18341 chr6 157528023 157528023 1 + C G BLCA 157528014 + 157527994 157528034 41 ATCCAGCAAGCCAAAAGTCACCGGAACATCAAGCTGCTGGA ATCCAGCAAGCCAAAAGTCACCGGAACATGAAGCTGCTGGA < 41bp 1 0.288063783885162 1 0.278240025043488 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARID1B ENSG00000049618 CDS Human protein_coding chr6:157528014 chr6:157528023 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_16848 0 0 1 0 0 Ribosome 1 0.500231656588477 1 0.999536686823046 hm5C_site_18341 DeepMRMD:1;iRNA_m5C:0.999536686823046 18342 chr6 157528023 157528023 1 + C G BLCA 157528015 + 157527995 157528035 41 TCCAGCAAGCCAAAAGTCACCGGAACATCAAGCTGCTGGAG TCCAGCAAGCCAAAAGTCACCGGAACATGAAGCTGCTGGAG < 41bp 1 0.387600970598001 1 0.837726473808289 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARID1B ENSG00000049618 CDS Human protein_coding chr6:157528015 chr6:157528023 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_16849 0 0 1 0 0 Ribosome 1 0.500231643921092 0.324547052383422 0.999536712157815 hm5C_site_18342 DeepMRMD:0.324547052383422;iRNA_m5C:0.999536712157815 18343 chr21 45113165 45113165 1 + G C BLCA 45113170 + 45113150 45113190 41 CCTCCACGGGGTGCTGAAGACCCCCACCAGCTCACCTGCCA CCTCCACGGGGTGCTCAAGACCCCCACCAGCTCACCTGCCA < 41bp 1 0.269998023777899 1 0.081935316324234 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RRP1B ENSG00000160208 CDS Human protein_coding chr21:45113170 chr21:45113165 synonymous SNV . 0 16 hm5C_associated_SNPs_16850 0 0 1 0 1 Cytosol 1 0.500232991735536 1 0.999534016528928 hm5C_site_18343 DeepMRMD:1;iRNA_m5C:0.999534016528928 18344 chr10 118314780 118314780 1 + C T BLCA 118314789 + 118314769 118314809 41 TGTAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGG TGTAATTCACATGGATGGTGCCCCCATAGTCCCCAATTTGG < 41bp 1 0.119792470305681 1 0.0291683673858643 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314789 chr10:118314780 nonsynonymous SNV 0.919 5 12 hm5C_associated_SNPs_16853 1 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_18344 DeepMRMD:1;iRNA_m5C:0.999536712157815 Pancreatic lipase deficiency Pancreatic lipase deficiency 18345 chr10 118314780 118314780 1 + C T BLCA 118314790 + 118314770 118314810 41 GTAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGG GTAATTCACATGGATGGTGCCCCCATAGTCCCCAATTTGGG < 41bp 1 0.511876618652681 1 0.101791381835938 experiment 0.976246762694638 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314790 chr10:118314780 nonsynonymous SNV 0.919 5 11 hm5C_associated_SNPs_16854 1 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_18345 DeepMRMD:1;iRNA_m5C:0.999536712157816 Pancreatic lipase deficiency Pancreatic lipase deficiency 18346 chr10 118314780 118314780 1 + C T BLCA 118314791 + 118314771 118314811 41 TAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGT TAATTCACATGGATGGTGCCCCCATAGTCCCCAATTTGGGT < 41bp 1 0.110241680129692 1 0.0577452778816223 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314791 chr10:118314780 nonsynonymous SNV 0.919 5 10 hm5C_associated_SNPs_16855 1 0 0 0 1 unknown 1 0.500231643923896 1 0.999536712152209 hm5C_site_18346 DeepMRMD:1;iRNA_m5C:0.999536712152209 Pancreatic lipase deficiency Pancreatic lipase deficiency 18347 chr10 118314780 118314780 1 + C T BLCA 118314792 + 118314772 118314812 41 AATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGTG AATTCACATGGATGGTGCCCCCATAGTCCCCAATTTGGGTG < 41bp 1 0.37325581942458 1 0.145056307315826 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314792 chr10:118314780 nonsynonymous SNV 0.919 5 9 hm5C_associated_SNPs_16856 1 0 0 0 1 unknown 1 0.500231643921085 1 0.99953671215783 hm5C_site_18347 DeepMRMD:1;iRNA_m5C:0.99953671215783 Pancreatic lipase deficiency Pancreatic lipase deficiency 18348 chr10 118314780 118314780 1 + C T BLCA 118314793 + 118314773 118314813 41 ATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGTGA ATTCACATGGATGGTGCCCCCATAGTCCCCAATTTGGGTGA < 41bp 1 0.585443567728676 1 0.344511568546295 experiment 0.829112864542648 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314793 chr10:118314780 nonsynonymous SNV 0.919 5 8 hm5C_associated_SNPs_16857 1 0 0 0 1 unknown 1 0.50023164393885 1 0.999536712122301 hm5C_site_18348 DeepMRMD:1;iRNA_m5C:0.999536712122301 Pancreatic lipase deficiency Pancreatic lipase deficiency 18349 chr10 118314780 118314780 1 + C T BLCA 118314800 + 118314780 118314820 41 CGGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTC TGGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTC < 41bp 1 0.583851485050352 1 0.12281060218811 experiment 0.832297029899296 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314800 chr10:118314780 nonsynonymous SNV 0.919 5 1 hm5C_associated_SNPs_16859 1 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_18349 DeepMRMD:1;iRNA_m5C:0.999536712157815 Pancreatic lipase deficiency Pancreatic lipase deficiency 18350 chr19 13051415 13051415 1 + G A BLCA 13051402 + 13051382 13051422 41 GACCCTGATGCTAAGAAGCCCGAGGACTGGGATGAAGAGAT GACCCTGATGCTAAGAAGCCCGAGGACTGGGATAAAGAGAT < 41bp 1 0.545850874507467 1 0.563229858875275 experiment 0.908298250985067 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13051402 chr19:13051415 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_16860 0 0 1 0 2 Ribosome 1 0.500231643921092 0.87354028224945 0.999536712157815 hm5C_site_18350 DeepMRMD:0.87354028224945;iRNA_m5C:0.999536712157815 18351 chr19 13051418 13051418 1 + G A BLCA 13051402 + 13051382 13051422 41 GACCCTGATGCTAAGAAGCCCGAGGACTGGGATGAAGAGAT GACCCTGATGCTAAGAAGCCCGAGGACTGGGATGAAAAGAT < 41bp 1 0.546786786045473 1 0.703466057777405 experiment 0.906426427909054 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13051402 chr19:13051418 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_16861 0 0 1 0 2 Ribosome 1 0.500231643921093 0.59306788444519 0.999536712157815 hm5C_site_18351 DeepMRMD:0.59306788444519;iRNA_m5C:0.999536712157815 18352 chr1 45267308 45267308 1 + C T BLCA 45267317 + 45267297 45267337 41 CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC CTGGCCCACATTTGGAAGGCCCGGCACACCCTGTTGGAGCC < 41bp 1 0.201245626668581 1 0.412274360656738 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267317 chr1:45267308 synonymous SNV . 0 12 hm5C_associated_SNPs_16862 0 0 1 0 1 Cytosol 1 0.500233260608852 1 0.999533478782297 hm5C_site_18352 DeepMRMD:1;iRNA_m5C:0.999533478782297 18353 chr22 24226515 24226515 1 + G A BLCA 24226534 + 24226514 24226554 41 AGAGCTGTTTGACCAGATGGCCAGGCCTGCTGCCTGCATGG AAAGCTGTTTGACCAGATGGCCAGGCCTGCTGCCTGCATGG < 41bp 1 0.381549959870403 1 0.253114998340607 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24226534 chr22:24226515 nonsynonymous SNV 0.992 5 2 hm5C_associated_SNPs_16863 0 0 1 1 1 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_18353 DeepMRMD:1;iRNA_m5C:0.999536712157815 18354 chr8 68007756 68007756 1 + G A BLCA 68007774 + 68007754 68007794 41 AAGAAGTGGGCATTTCCAACCTAAAACATCAAAGGTTTGCA AAAAAGTGGGCATTTCCAACCTAAAACATCAAAGGTTTGCA < 41bp 1 0.366241783808001 1 0.388838171958923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68007774 chr8:68007756 nonsynonymous SNV 0.859 1 3 hm5C_associated_SNPs_16864 0 0 1 1 0 Cytosol 1 0.500231643893647 1 0.999536712212705 hm5C_site_18354 DeepMRMD:1;iRNA_m5C:0.999536712212705 18355 chr11 107917093 107917093 1 + G A BLCA 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAAGCACAAGCAGTAAGTTCTACATGC < 41bp 1 0.312319609196946 1 0.266749799251556 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917093 synonymous SNV . 0 23 hm5C_associated_SNPs_16865 0 0 1 2 2 Ribosome 1 0.500231646322433 1 0.999536707355135 hm5C_site_18355 DeepMRMD:1;iRNA_m5C:0.999536707355135 18356 chr22 39770461 39770461 1 + C T BLCA 39770450 + 39770430 39770470 41 ATGGCGTGGCCGTGGGCGTGCTCGCCTTCCTCACCTGCCTG ATGGCGTGGCCGTGGGCGTGCTCGCCTTCCTTACCTGCCTG < 41bp 1 0.63282118563739 1 0.272063881158829 experiment 0.734357628725221 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNGR1 ENSG00000100321 CDS Human protein_coding chr22:39770450 chr22:39770461 synonymous SNV . 0 32 hm5C_associated_SNPs_16866 0 0 1 0 1 Endoplasmic reticulum 1 0.500231681198844 1 0.999536637602313 hm5C_site_18356 DeepMRMD:1;iRNA_m5C:0.999536637602313 18357 chr1 1246357 1246357 1 + G A BLCA 1246369 + 1246349 1246389 41 GTGAAGACGATTCTGGAGAGCCAAGATCCCCTGGGCAAGCA GTGAAGACAATTCTGGAGAGCCAAGATCCCCTGGGCAAGCA < 41bp 1 0.296945341377314 1 0.223113805055618 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1246369 chr1:1246357 synonymous SNV . 0 9 hm5C_associated_SNPs_16867 0 0 1 0 2 Ribosome 1 0.500231643691413 1 0.999536712617173 hm5C_site_18357 DeepMRMD:1;iRNA_m5C:0.999536712617173 18358 chr12 57599381 57599381 1 + C G BLCA 57599390 + 57599370 57599410 41 TGCTCCCAGCTCTGCAACAACACCAAGGGCGGCCACCTCTG TGCTCCCAGCTGTGCAACAACACCAAGGGCGGCCACCTCTG < 41bp 1 0.429994985162989 1 0.265861868858337 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599390 chr12:57599381 synonymous SNV . 0 12 hm5C_associated_SNPs_16868 0 0 1 0 2 Exosome 1 0.500240830390257 1 0.999518339219485 hm5C_site_18358 DeepMRMD:1;iRNA_m5C:0.999518339219485 18359 chr11 65826374 65826374 1 + C T BLCA 65826372 + 65826352 65826392 41 CGAGGGGTGTCCTCTGAGAGCTCTGGGGACCGGGAGAAAGA CGAGGGGTGTCCTCTGAGAGCTTTGGGGACCGGGAGAAAGA < 41bp 1 0.245988896469722 1 0.167964398860931 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826372 chr11:65826374 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_16869 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18359 DeepMRMD:1;iRNA_m5C:0.999536712157815 18360 chr11 65826374 65826374 1 + C T BLCA 65826381 + 65826361 65826401 41 TCCTCTGAGAGCTCTGGGGACCGGGAGAAAGACTCAACCCG TCCTCTGAGAGCTTTGGGGACCGGGAGAAAGACTCAACCCG < 41bp 1 0.578773676124234 1 0.578802049160004 experiment 0.842452647751533 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826381 chr11:65826374 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_16870 0 0 1 0 1 Nucleus 1 0.500231643924114 0.842395901679992 0.999536712151772 hm5C_site_18360 DeepMRMD:0.842395901679992;iRNA_m5C:0.999536712151772 18361 chr1 41494360 41494360 1 + G A BLCA 41494376 - 41494356 41494396 41 TCGGACCGATACCTGGAGAGCCGCGATGCCTCTCGACTGAG TCGGACCGATACCTGGAGAGCCGCGATGCCTCTCGATTGAG < 41bp 1 0.420441454775155 1 0.158170282840729 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCMH1 ENSG00000010803 CDS Human protein_coding chr1:41494376 chr1:41494360 synonymous SNV . 0 37 hm5C_associated_SNPs_16871 0 0 1 0 0 Cytosol 1 0.50035389420193 1 0.99929221159614 hm5C_site_18361 DeepMRMD:1;iRNA_m5C:0.99929221159614 18362 chr8 121468867 121468867 1 + C A BLCA 121468848 + 121468828 121468868 41 ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTCA ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTAA < 41bp 1 0.393755359137925 1 0.220908403396606 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTBP ENSG00000172167 CDS Human protein_coding chr8:121468848 chr8:121468867 stopgain 0.949 0 40 hm5C_associated_SNPs_16872 0 0 1 0 2 membrane 1 0.500231643927925 1 0.99953671214415 hm5C_site_18362 DeepMRMD:1;iRNA_m5C:0.99953671214415 18363 chr13 114541062 114541062 1 + G A BLCA 114541049 - 114541029 114541069 41 CTCTCCTCTGATGGCAGGACCTGCCAAGGTAAGGCCCTGGG CTCTCCTTTGATGGCAGGACCTGCCAAGGTAAGGCCCTGGG < 41bp 1 0.304549784733654 1 0.0914443731307983 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541049 chr13:114541062 nonsynonymous SNV 0.001 1 8 hm5C_associated_SNPs_16873 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921062 1 0.999536712157877 hm5C_site_18363 DeepMRMD:1;iRNA_m5C:0.999536712157877 18364 chr1 218458681 218458681 1 + C G BLCA 218458666 + 218458646 218458686 41 CCGGCGCAGAAAAATGGCAGCCGCCGCTCCGGACTCACGTG CCGGCGCAGAAAAATGGCAGCCGCCGCTCCGGACTGACGTG < 41bp 1 0.286005245175838 1 0.413005471229553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RRP15 ENSG00000067533 CDS Human protein_coding chr1:218458666 chr1:218458681 stopgain 0.715 0 36 hm5C_associated_SNPs_16874 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18364 DeepMRMD:1;iRNA_m5C:0.999536712157815 18365 chr1 22835057 22835057 1 + C T BLCA 22835072 + 22835052 22835092 41 TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAG TGGTTTAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAG < 41bp 1 0.445053283914895 1 0.749760985374451 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22835072 chr1:22835057 nonsynonymous SNV 0.996 2 6 hm5C_associated_SNPs_16876 0 0 1 0 1 Nucleus 1 0.500231554808727 0.500478029251098 0.999536890382547 hm5C_site_18365 DeepMRMD:0.500478029251098;iRNA_m5C:0.999536890382547 18366 chr12 54394372 54394372 1 + G A BLCA 54394365 + 54394345 54394385 41 GGGCGCCGCGCGGACTGCGGCCCAGGGGAGGGCCGCAGCTA GGGCGCCGCGCGGACTGCGGCCCAGGGAAGGGCCGCAGCTA < 41bp 1 0.507641595497004 1 0.528467774391174 experiment 0.984716809005992 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54394365 chr12:54394372 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_16878 0 0 1 0 0 chromatin 1 0.500231643921092 0.943064451217652 0.999536712157816 hm5C_site_18366 DeepMRMD:0.943064451217652;iRNA_m5C:0.999536712157816 18367 chr12 54394372 54394372 1 + G A BLCA 54394377 + 54394357 54394397 41 GACTGCGGCCCAGGGGAGGGCCGCAGCTACCCGGACTACAT GACTGCGGCCCAGGGAAGGGCCGCAGCTACCCGGACTACAT < 41bp 1 0.659906160232138 1 0.28791332244873 experiment 0.680187679535724 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54394377 chr12:54394372 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_16880 0 0 1 0 0 chromatin 1 0.500231643858661 1 0.999536712282679 hm5C_site_18367 DeepMRMD:1;iRNA_m5C:0.999536712282679 18368 chr12 54394372 54394372 1 + G A BLCA 54394378 + 54394358 54394398 41 ACTGCGGCCCAGGGGAGGGCCGCAGCTACCCGGACTACATG ACTGCGGCCCAGGGAAGGGCCGCAGCTACCCGGACTACATG < 41bp 1 0.696339559665387 1 0.229491114616394 experiment 0.607320880669226 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54394378 chr12:54394372 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_16881 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18368 DeepMRMD:1;iRNA_m5C:0.999536712157815 18369 chr12 54394372 54394372 1 + G A BLCA 54394380 + 54394360 54394400 41 TGCGGCCCAGGGGAGGGCCGCAGCTACCCGGACTACATGTA TGCGGCCCAGGGAAGGGCCGCAGCTACCCGGACTACATGTA < 41bp 1 0.397792980055693 1 0.267610371112823 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54394380 chr12:54394372 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_16882 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18369 DeepMRMD:1;iRNA_m5C:0.999536712157815 18370 chr8 41355114 41355114 1 + C T BLCA 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGCCAGTCATATCTTGAAGGTTGT < 41bp 1 0.153513517466846 1 0.156774312257767 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355114 synonymous SNV . 0 32 hm5C_associated_SNPs_16885 0 0 1 0 2 Ribosome 1 0.500231643943756 1 0.999536712112489 hm5C_site_18370 DeepMRMD:1;iRNA_m5C:0.999536712112489 18371 chr14 37739687 37739687 1 + C T BLCA 37739679 + 37739659 37739699 41 AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA AGAGAAAACTAAAGTTTAAGCTGGAACTTCAAGAGAAAGAA < 41bp 1 0.637133828047031 1 0.482292026281357 experiment 0.725732343905938 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37739679 chr14:37739687 synonymous SNV . 0 29 hm5C_associated_SNPs_16886 0 0 1 0 2 chromatin 1 0.500231759697718 1 0.999536480604564 hm5C_site_18371 DeepMRMD:1;iRNA_m5C:0.999536480604564 18372 chr12 79689917 79689917 1 + C G BLCA 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CGCCTTGGACATGGGGGGCACATCTGATCCTTAGGTGAAAG < 41bp 1 0.173691375528486 1 0.166295737028122 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689917 stopgain 0.987 1 34 hm5C_associated_SNPs_16887 0 0 0 0 2 Cytosol 1 0.500231643920195 1 0.999536712159609 hm5C_site_18372 DeepMRMD:1;iRNA_m5C:0.999536712159609 18373 chr3 126724992 126724992 1 + C T BLCA 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTTGTCTTCTACAACTGCAGCGTCCACCAGTC < 41bp 1 0.232396702415878 1 0.149115413427353 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126724992 synonymous SNV . 0 12 hm5C_associated_SNPs_16889 0 0 1 0 2 Ribosome 1 0.500231729027571 1 0.999536541944857 hm5C_site_18373 DeepMRMD:1;iRNA_m5C:0.999536541944857 18374 chr11 94554952 94554952 1 + C T BLCA 94554949 + 94554929 94554969 41 ACCGGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT ACCGGGTGCTTCACCAGGAACTTTAGGGTTACTACGACAAT < 41bp 1 0.156933209467698 1 0.0426737070083618 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94554949 chr11:94554952 stopgain 0.999 1 24 hm5C_associated_SNPs_16890 0 0 1 0 1 chromatin 1 0.500231643921094 1 0.999536712157812 hm5C_site_18374 DeepMRMD:1;iRNA_m5C:0.999536712157812 18375 chr5 149925000 149925000 1 + C T BLCA 149925006 + 149924986 149925026 41 CCCAAAGCCAAGGTCCTGACCATCCTCATCAACCCCGCGGA CCCAAAGCCAAGGTTCTGACCATCCTCATCAACCCCGCGGA < 41bp 1 0.146758227461805 1 0.041012167930603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDST1 ENSG00000070614 CDS Human protein_coding chr5:149925006 chr5:149925000 synonymous SNV . 0 15 hm5C_associated_SNPs_16891 0 0 1 0 1 Cytosol 1 0.500237074462062 1 0.999525851075876 hm5C_site_18375 DeepMRMD:1;iRNA_m5C:0.999525851075876 18376 chr3 153840106 153840106 1 + C T BLCA 153840113 + 153840093 153840133 41 CTCTCCTCGACTTCGACGGCCCAAGTCACCCAAGCTCCCCA CTCTCCTCGACTTTGACGGCCCAAGTCACCCAAGCTCCCCA < 41bp 1 0.189114858171157 1 0.0482192933559418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF26 ENSG00000114790 CDS Human protein_coding chr3:153840113 chr3:153840106 stopgain 0.975 0 14 hm5C_associated_SNPs_16892 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18376 DeepMRMD:1;iRNA_m5C:0.999536712157815 18377 chr1 44083220 44083220 1 + C T BLCA 44083229 + 44083209 44083249 41 CACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG CACTCTCGAGTTATCCTTACCTCTATCGATGGTGAGCCAAG < 41bp 1 0.335770149019023 1 0.833068251609802 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083229 chr1:44083220 synonymous SNV . 0 12 hm5C_associated_SNPs_16893 0 0 0 0 1 Ribosome 1 0.500231952658867 0.333863496780396 0.999536094682265 hm5C_site_18377 DeepMRMD:0.333863496780396;iRNA_m5C:0.999536094682265 18378 chr19 1978471 1978471 1 + C T BLCA 1978465 + 1978445 1978485 41 CGATCAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG CGATCAAGTCCCGGGCCCCGCAGCTGTACCTGGAGTACCGG < 41bp 1 0.533353644563467 1 0.707549750804901 experiment 0.933292710873066 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978465 chr19:1978471 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_16894 0 0 1 0 2 Ribosome 1 0.500231643921264 0.584900498390198 0.999536712157471 hm5C_site_18378 DeepMRMD:0.584900498390198;iRNA_m5C:0.999536712157471 18379 chr1 41475876 41475876 1 + G C BLCA 41475860 + 41475840 41475880 41 TATAGTGACAGGAGTGGAAGCAGCTCCCCTGACTCTGAAAT TATAGTGACAGGAGTGGAAGCAGCTCCCCTGACTCTCAAAT < 41bp 1 0.326585811537371 1 0.839017391204834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41475860 chr1:41475876 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_16895 0 0 1 0 1 Nucleus 1 0.500231643921354 0.321965217590332 0.999536712157292 hm5C_site_18379 DeepMRMD:0.321965217590332;iRNA_m5C:0.999536712157292 18380 chr17 39978063 39978063 1 + G A BLCA 39978062 + 39978042 39978082 41 CAAGGATGGCGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT CAAGGATGGCGAGGTCCCTCCAGAGGAGGTGGGTGAAGGTT < 41bp 1 0.530462483004061 1 0.742897391319275 experiment 0.939075033991879 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39978062 chr17:39978063 synonymous SNV . 0 22 hm5C_associated_SNPs_16896 0 0 1 0 1 Nucleus 1 0.500231643921093 0.51420521736145 0.999536712157815 hm5C_site_18380 DeepMRMD:0.51420521736145;iRNA_m5C:0.999536712157815 18381 chr2 62934344 62934344 1 + G C BLCA 62934334 + 62934314 62934354 41 TTGACTGATCATCATGGCTTCAGTTTGGAAGAGACTGCAGC TTGACTGATCATCATGGCTTCAGTTTGGAACAGACTGCAGC < 41bp 1 0.114925097287137 1 0.0468286275863647 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EHBP1 ENSG00000115504 CDS Human protein_coding chr2:62934334 chr2:62934344 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_16898 0 0 1 0 1 Nucleus 1 0.500244570629929 1 0.999510858740142 hm5C_site_18381 DeepMRMD:1;iRNA_m5C:0.999510858740142 18382 chr3 47382156 47382156 1 + G C BLCA 47382146 + 47382126 47382166 41 TCCCTCAGCTCCGTGGAGACCTACTCACCTGAGACGGACAA TCCCTCAGCTCCGTGGAGACCTACTCACCTCAGACGGACAA < 41bp 1 0.333970286770488 1 0.0921139121055603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47382146 chr3:47382156 nonsynonymous SNV 0.998 1 31 hm5C_associated_SNPs_16899 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18382 DeepMRMD:1;iRNA_m5C:0.999536712157815 18383 chr1 24998057 24998057 1 + G C BLCA 24998049 + 24998029 24998069 41 AGCTGCCACAACCACATTAGCACAGGAAGAGCCAGTGGCAG AGCTGCCACAACCACATTAGCACAGGAACAGCCAGTGGCAG < 41bp 1 0.680922557544224 1 0.172869205474854 experiment 0.638154884911552 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24998049 chr1:24998057 nonsynonymous SNV 0.539 2 29 hm5C_associated_SNPs_16900 0 0 1 0 0 Cytosol 1 0.500370415752916 1 0.999259168494169 hm5C_site_18383 DeepMRMD:1;iRNA_m5C:0.999259168494169 18384 chr3 37583996 37583996 1 + G C BLCA 37583980 + 37583960 37584000 41 GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGAGAGAC GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGACAGAC < 41bp 1 0.294977087419383 1 0.0543371438980103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37583980 chr3:37583996 nonsynonymous SNV 0.898 1 37 hm5C_associated_SNPs_16901 0 0 0 0 2 Nucleus 1 0.500231643927288 1 0.999536712145425 hm5C_site_18384 DeepMRMD:1;iRNA_m5C:0.999536712145425 18385 chr12 49888630 49888630 1 + C A BLCA 49888623 + 49888603 49888643 41 TTCAAGAGGAACAGTCTGCGCCTTCCTCAGAGAAAGGTGGT TTCAAGAGGAACAGTCTGCGCCTTCCTAAGAGAAAGGTGGT < 41bp 1 0.0126600320614985 1 0.331433117389679 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATS2 ENSG00000123352 CDS Human protein_coding chr12:49888623 chr12:49888630 stopgain 0.995 0 28 hm5C_associated_SNPs_16903 0 0 1 0 0 chromatin 1 0.500231643921046 1 0.999536712157909 hm5C_site_18385 DeepMRMD:1;iRNA_m5C:0.999536712157909 18386 chrX 24073096 24073096 1 + G A BLCA 24073094 + 24073074 24073114 41 TCTTTTGGCAACATGGCGGGCGGAGAAGCTGGAGTGACTCT TCTTTTGGCAACATGGCGGGCGAAGAAGCTGGAGTGACTCT < 41bp 1 0.518609598875443 1 0.482771635055542 experiment 0.962780802249114 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2S3 ENSG00000130741 CDS Human protein_coding chrX:24073094 chrX:24073096 nonsynonymous SNV 0.255 1 23 hm5C_associated_SNPs_16904 0 0 1 0 1 Cytosol 1 0.500231643925636 1 0.999536712148728 hm5C_site_18386 DeepMRMD:1;iRNA_m5C:0.999536712148728 18387 chr11 64852679 64852679 1 + G A BLCA 64852682 + 64852662 64852702 41 CTGGCCAGCCGAGAGACGACCCGCCTTGTCTGCTATGGTGA CTGGCCAGCCGAGAGACAACCCGCCTTGTCTGCTATGGTGA < 41bp 1 0.29586248073978 1 0.420460283756256 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64852682 chr11:64852679 synonymous SNV . 0 18 hm5C_associated_SNPs_16905 0 0 1 0 2 Ribosome 1 0.500231658781235 1 0.99953668243753 hm5C_site_18387 DeepMRMD:1;iRNA_m5C:0.99953668243753 18388 chr1 231377135 231377135 1 + C A BLCA 231377115 + 231377095 231377135 41 CCAGACCCCGCCCGGGAAGGCAGCCGCACCATGGAGTCTTC CCAGACCCCGCCCGGGAAGGCAGCCGCACCATGGAGTCTTA < 41bp 1 0.660183503418583 1 0.510588765144348 experiment 0.679632993162833 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231377115 chr1:231377135 nonsynonymous SNV 0.001 0 41 hm5C_associated_SNPs_16906 0 0 1 0 1 Cytosol 1 0.500231643921094 0.978822469711304 0.999536712157812 hm5C_site_18388 DeepMRMD:0.978822469711304;iRNA_m5C:0.999536712157812 18389 chr7 69583203 69583203 1 + G A BLCA 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCAGGA < 41bp 1 0.111023582743347 1 0.175625592470169 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583203 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_16907 0 0 1 0 2 Nucleus 1 0.500231511946421 1 0.999536976107157 hm5C_site_18389 DeepMRMD:1;iRNA_m5C:0.999536976107157 18390 chr12 109604795 109604795 1 + G A BLCA 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCACACGCTTTGGGGGGGATCGGGTCATCGAAAAGGTACAG < 41bp 1 0.520430912309524 1 0.755707025527954 experiment 0.959138175380952 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604795 synonymous SNV . 0 32 hm5C_associated_SNPs_16908 0 0 1 0 1 Nucleus 1 0.500231643921093 0.488585948944092 0.999536712157815 hm5C_site_18390 DeepMRMD:0.488585948944092;iRNA_m5C:0.999536712157815 18391 chr1 29069442 29069442 1 + C T BLCA 29069427 + 29069407 29069447 41 TCTGCTGTTGGTAGCGGGTCCATTACTAGTAACATCGTGGC TCTGCTGTTGGTAGCGGGTCCATTACTAGTAACATTGTGGC < 41bp 1 0.24611755793548 1 0.197532147169113 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069427 chr1:29069442 synonymous SNV . 0 36 hm5C_associated_SNPs_16909 0 0 1 0 0 Cytosol 1 0.500231703917402 1 0.999536592165197 hm5C_site_18391 DeepMRMD:1;iRNA_m5C:0.999536592165197 18392 chr19 17313011 17313011 1 + G C BLCA 17313031 + 17313011 17313051 41 GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT CAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT < 41bp 1 0.131886342077661 1 0.0650624632835388 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17313031 chr19:17313011 nonsynonymous SNV 0.003 1 1 hm5C_associated_SNPs_16910 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18392 DeepMRMD:1;iRNA_m5C:0.999536712157815 18393 chr10 115644091 115644091 1 + G A BLCA 115644100 + 115644080 115644120 41 GAGCAAAAGGAGAACAACAACCCATTAGTTCCCCTTGGGAT GAGCAAAAGGAAAACAACAACCCATTAGTTCCCCTTGGGAT < 41bp 1 0.196902988977552 1 0.215644210577011 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115644100 chr10:115644091 nonsynonymous SNV 0.620 0 12 hm5C_associated_SNPs_16911 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_18393 DeepMRMD:1;iRNA_m5C:0.999536712157815 18394 chrX 53114927 53114927 1 + G C BLCA 53114930 + 53114910 53114950 41 ACAATTCATGACATCAAGATCTCTGACTTCATGGAGACCAC ACAATTCATGACATCAACATCTCTGACTTCATGGAGACCAC < 41bp 1 0.432196208756242 1 0.316030502319336 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53114930 chrX:53114927 nonsynonymous SNV 0.999 3 18 hm5C_associated_SNPs_16912 0 0 1 0 0 chromatin 1 0.500231643590503 1 0.999536712818994 hm5C_site_18394 DeepMRMD:1;iRNA_m5C:0.999536712818994 18395 chr19 34868416 34868416 1 + G C BLCA 34868408 + 34868388 34868428 41 CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGG CATCTTCGCCCCTGTGCCAGCGTGTCCGCAGCGGTGACTGG < 41bp 1 0.211468235673606 1 0.450385481119156 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868408 chr19:34868416 synonymous SNV . 0 29 hm5C_associated_SNPs_16913 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18395 DeepMRMD:1;iRNA_m5C:0.999536712157815 18396 chr19 34868416 34868416 1 + G C BLCA 34868413 + 34868393 34868433 41 TCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGGAAGGG TCGCCCCTGTGCCAGCGTGTCCGCAGCGGTGACTGGAAGGG < 41bp 1 0.541858409218026 1 0.222105771303177 experiment 0.916283181563949 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868413 chr19:34868416 synonymous SNV . 0 24 hm5C_associated_SNPs_16914 0 0 1 0 1 Ribosome 1 0.500231623207524 1 0.999536753584951 hm5C_site_18396 DeepMRMD:1;iRNA_m5C:0.999536753584951 18397 chr14 68042625 68042625 1 + G C BLCA 68042632 + 68042612 68042652 41 GACTATGAGGCTGGAGGAACCAGACGGTTGCTTTCCTCCCA GACTATGAGGCTGCAGGAACCAGACGGTTGCTTTCCTCCCA < 41bp 1 0.588766816981337 1 0.786438226699829 experiment 0.822466366037327 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042632 chr14:68042625 nonsynonymous SNV 0.972 0 14 hm5C_associated_SNPs_16915 0 0 0 0 2 Endoplasmic reticulum 1 0.500231665045301 0.427123546600342 0.999536669909399 hm5C_site_18397 DeepMRMD:0.427123546600342;iRNA_m5C:0.999536669909399 18398 chr7 150761792 150761792 1 + G A BLCA 150761806 + 150761786 150761826 41 GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC GCCAGCAAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC < 41bp 1 0.597178286413091 1 0.490647196769714 experiment 0.805643427173818 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761806 chr7:150761792 nonsynonymous SNV 0.030 1 7 hm5C_associated_SNPs_16916 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18398 DeepMRMD:1;iRNA_m5C:0.999536712157815 18399 chr6 80741194 80741194 1 + C G BLCA 80741213 + 80741193 80741233 41 TCTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT TGTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT < 41bp 1 0.0240543793760812 1 0.11857658624649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTK ENSG00000112742 CDS Human protein_coding chr6:80741213 chr6:80741194 nonsynonymous SNV 0.076 3 2 hm5C_associated_SNPs_16917 0 0 1 0 2 chromatin 1 0.500231640900176 1 0.999536718199649 hm5C_site_18399 DeepMRMD:1;iRNA_m5C:0.999536718199649 18400 chr1 145509201 145509201 1 + G C BLCA 145509191 + 145509171 145509211 41 GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA GCCGAAGACGCAGCAGAAGTCCAGACCGGACACGTCGCTGA < 41bp 1 0.376230144296306 1 0.389895349740982 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509191 chr1:145509201 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_16918 0 0 1 0 1 Ribosome 1 0.500231643944776 1 0.999536712110447 hm5C_site_18400 DeepMRMD:1;iRNA_m5C:0.999536712110447 18401 chr1 145509201 145509201 1 + G C BLCA 145509206 + 145509186 145509226 41 GAAGTCCAGACCGGAGACGTCGCTGACAGGTCCTCTGTTGT GAAGTCCAGACCGGACACGTCGCTGACAGGTCCTCTGTTGT < 41bp 1 0.162758147525382 1 0.156719475984573 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM8A ENSG00000131795 CDS Human other chr1:145509206 chr1:145509201 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_16919 0 0 1 0 1 Ribosome 1 0.500231656206217 1 0.999536687587566 hm5C_site_18401 DeepMRMD:1;iRNA_m5C:0.999536687587566 18402 chr17 79408925 79408925 1 + G A BLCA 79408935 + 79408915 79408955 41 CTTCCCCAGCGTGGCCCGGGCCGCCCCTGCCCACCCCATGG CTTCCCCAGCATGGCCCGGGCCGCCCCTGCCCACCCCATGG < 41bp 1 0.100989807051459 1 0.106438338756561 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79408935 chr17:79408925 nonsynonymous SNV 0.436 0 11 hm5C_associated_SNPs_16920 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_18402 DeepMRMD:1;iRNA_m5C:0.999536712157815 18403 chrX 152915712 152915712 1 + C G BLCA 152915709 + 152915689 152915729 41 GCGGCCTCCAACCCGCCCTCCTTCTTCACCACCCCCACCAG GCGGCCTCCAACCCGCCCTCCTTGTTCACCACCCCCACCAG < 41bp 1 0.322035898850534 1 0.0686799585819244 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152915709 chrX:152915712 nonsynonymous SNV 0.972 2 24 hm5C_associated_SNPs_16921 0 0 0 0 0 cytosol 1 0.500231644348884 1 0.999536711302232 hm5C_site_18403 DeepMRMD:1;iRNA_m5C:0.999536711302232 18404 chr5 43649344 43649344 1 + C G BLCA 43649348 + 43649328 43649368 41 TGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACCCCTG TGGCATTGTGGGGTATGATACCGTCTGGGGAGTGACCCCTG < 41bp 1 0.257307144135807 1 0.200734555721283 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43649348 chr5:43649344 nonsynonymous SNV 0.290 3 17 hm5C_associated_SNPs_16922 0 0 1 0 2 Endoplasmic reticulum 1 0.500231642953104 1 0.999536714093792 hm5C_site_18404 DeepMRMD:1;iRNA_m5C:0.999536714093792 18405 chr20 3781979 3781979 1 + G C BLCA 3781963 + 3781943 3781983 41 CCCCTGGCCCTAGGTCGCTTCTCTCTGACCCCTGCAGAGGG CCCCTGGCCCTAGGTCGCTTCTCTCTGACCCCTGCACAGGG < 41bp 1 0.192163679300658 1 0.713423192501068 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781963 chr20:3781979 nonsynonymous SNV 0.000 0 37 hm5C_associated_SNPs_16923 0 0 1 0 1 Ribosome 1 0.500231644004015 0.573153614997864 0.99953671199197 hm5C_site_18405 DeepMRMD:0.573153614997864;iRNA_m5C:0.99953671199197 18406 chr1 107600179 107600179 1 + G A BLCA 107600162 + 107600142 107600182 41 GCCGGAGTGGGCGGGCGCTTCCGCTGCAGCTGCTATGGCTC GCCGGAGTGGGCGGGCGCTTCCGCTGCAGCTGCTATGACTC < 41bp 1 0.665616584428835 1 0.668209612369537 experiment 0.668766831142329 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRMT6 ENSG00000198890 CDS Human protein_coding chr1:107600162 chr1:107600179 nonsynonymous SNV 0.995 2 38 hm5C_associated_SNPs_16924 0 0 0 0 0 Ribosome 1 0.500231643920849 0.663580775260926 0.999536712158302 hm5C_site_18406 DeepMRMD:0.663580775260926;iRNA_m5C:0.999536712158302 18407 chr7 100201601 100201601 1 + T C BLCA 100201610 + 100201590 100201630 41 GGGCCAGACTGTGTCCCTCTCATTCCGAGTCTTCGACCTGG GGGCCAGACTGCGTCCCTCTCATTCCGAGTCTTCGACCTGG < 41bp 1 0.119360646102732 1 0.0332517325878143 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100201610 chr7:100201601 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_16925 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920788 1 0.999536712158425 hm5C_site_18407 DeepMRMD:1;iRNA_m5C:0.999536712158425 18408 chr12 132547114 132547114 1 + G A BLCA 132547130 + 132547110 132547150 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG AGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG < 41bp 1 0.516352220621486 1 0.650982141494751 experiment 0.967295558757028 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132547130 chr12:132547114 synonymous SNV . 0 5 hm5C_associated_SNPs_16926 0 0 0 0 0 Cytosol 1 0.500232275674058 0.698035717010498 0.999535448651884 hm5C_site_18408 DeepMRMD:0.698035717010498;iRNA_m5C:0.999535448651884 18409 chr19 45975945 45975945 1 + G A BLCA 45975941 + 45975921 45975961 41 AGATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCG AGATCCCCTACGAAGAGGGGCCCGAGCCGGGCCCGCTGGCG < 41bp 1 0.534922077213552 1 0.376892060041428 experiment 0.930155845572895 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975941 chr19:45975945 nonsynonymous SNV 0.795 3 25 hm5C_associated_SNPs_16927 0 0 0 0 1 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_18409 DeepMRMD:1;iRNA_m5C:0.999536712157813 18410 chr19 45975945 45975945 1 + G A BLCA 45975942 + 45975922 45975962 41 GATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGG GATCCCCTACGAAGAGGGGCCCGAGCCGGGCCCGCTGGCGG < 41bp 1 0.410528526921007 1 0.460716515779495 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975942 chr19:45975945 nonsynonymous SNV 0.795 3 24 hm5C_associated_SNPs_16928 0 0 0 0 1 Cytosol 1 0.500231643839874 1 0.999536712320251 hm5C_site_18410 DeepMRMD:1;iRNA_m5C:0.999536712320251 18411 chr19 45975945 45975945 1 + G A BLCA 45975943 + 45975923 45975963 41 ATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGGA ATCCCCTACGAAGAGGGGCCCGAGCCGGGCCCGCTGGCGGA < 41bp 1 0.581732911576075 1 0.723929345607758 experiment 0.83653417684785 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975943 chr19:45975945 nonsynonymous SNV 0.795 3 23 hm5C_associated_SNPs_16929 0 0 0 0 1 Cytosol 1 0.5002316440209 0.552141308784484 0.9995367119582 hm5C_site_18411 DeepMRMD:0.552141308784484;iRNA_m5C:0.9995367119582 18412 chr19 45975945 45975945 1 + G A BLCA 45975952 + 45975932 45975972 41 GAAGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGA GAAGAGGGGCCCGAGCCGGGCCCGCTGGCGGAGGTGAGAGA < 41bp 1 0.338985447059248 1 0.152392119169235 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975952 chr19:45975945 nonsynonymous SNV 0.795 3 14 hm5C_associated_SNPs_16930 0 0 0 0 1 Cytosol 1 0.500231641639255 1 0.99953671672149 hm5C_site_18412 DeepMRMD:1;iRNA_m5C:0.99953671672149 18413 chr19 45975945 45975945 1 + G A BLCA 45975953 + 45975933 45975973 41 AAGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGAT AAGAGGGGCCCGAGCCGGGCCCGCTGGCGGAGGTGAGAGAT < 41bp 1 0.354911884301786 1 0.411852866411209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975953 chr19:45975945 nonsynonymous SNV 0.795 3 13 hm5C_associated_SNPs_16931 0 0 0 0 1 Cytosol 1 0.500231641622341 1 0.999536716755318 hm5C_site_18413 DeepMRMD:1;iRNA_m5C:0.999536716755318 18414 chr19 45975945 45975945 1 + G A BLCA 45975954 + 45975934 45975974 41 AGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGATT AGAGGGGCCCGAGCCGGGCCCGCTGGCGGAGGTGAGAGATT < 41bp 1 0.51518006488004 1 0.282200753688812 experiment 0.96963987023992 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975954 chr19:45975945 nonsynonymous SNV 0.795 3 12 hm5C_associated_SNPs_16932 0 0 0 0 1 Cytosol 1 0.500231643904943 1 0.999536712190114 hm5C_site_18414 DeepMRMD:1;iRNA_m5C:0.999536712190114 18415 chr3 51981796 51981796 1 + G A BLCA 51981779 + 51981759 51981799 41 TTGGCATGAAGTGTGGGGCCCACCATGTCGGCTACATGTTC TTGGCATGAAGTGTGGGGCCCACCATGTCGGCTACATATTC < 41bp 1 0.605317041318292 1 0.143372297286987 experiment 0.789365917363416 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PARP3 ENSG00000041880 CDS Human protein_coding chr3:51981779 chr3:51981796 nonsynonymous SNV 0.998 2 38 hm5C_associated_SNPs_16933 0 0 0 0 1 nucleus 1 0.500134155453778 1 0.999731689092444 hm5C_site_18415 DeepMRMD:1;iRNA_m5C:0.999731689092444 18416 chr16 3339568 3339568 1 + G A BLCA 3339549 + 3339529 3339569 41 GCAAGGGGATTGGGCGCCTCCCCCAGAGGGTGGAATGGAGC GCAAGGGGATTGGGCGCCTCCCCCAGAGGGTGGAATGGAAC < 41bp 1 0.598854733331919 1 0.578468203544617 experiment 0.802290533336162 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3339549 chr16:3339568 nonsynonymous SNV 0.002 0 40 hm5C_associated_SNPs_16934 0 0 0 0 0 Cytosol 1 0.500231662234837 0.843063592910766 0.999536675530327 hm5C_site_18416 DeepMRMD:0.843063592910766;iRNA_m5C:0.999536675530327 18417 chr16 89261552 89261552 1 + C T BLCA 89261534 + 89261514 89261554 41 GTCTTTCTCCTGGGGCACTGCTACCCAGACACAGAGGCCGG GTCTTTCTCCTGGGGCACTGCTACCCAGACACAGAGGCTGG < 41bp 1 0.281407383473358 1 0.193933129310608 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDH15 ENSG00000129910 CDS Human protein_coding chr16:89261534 chr16:89261552 nonsynonymous SNV 0.000 1 39 hm5C_associated_SNPs_16935 0 0 0 0 0 nucleus 1 0.50023164391983 1 0.99953671216034 hm5C_site_18417 DeepMRMD:1;iRNA_m5C:0.99953671216034 18418 chr19 10402264 10402264 1 + C T BLCA 10402280 + 10402260 10402300 41 CGTGCGAGCCTCACGCTGACCCTGCTGCGGGGCGCCCAGGA CGTGTGAGCCTCACGCTGACCCTGCTGCGGGGCGCCCAGGA < 41bp 1 0.186967830548423 1 0.346922367811203 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10402280 chr19:10402264 nonsynonymous SNV 0.163 0 5 hm5C_associated_SNPs_16936 0 0 1 0 1 Endoplasmic reticulum 1 0.50024983319606 1 0.999500333607881 hm5C_site_18418 DeepMRMD:1;iRNA_m5C:0.999500333607881 18419 chr19 10402264 10402264 1 + C T BLCA 10402281 + 10402261 10402301 41 GTGCGAGCCTCACGCTGACCCTGCTGCGGGGCGCCCAGGAG GTGTGAGCCTCACGCTGACCCTGCTGCGGGGCGCCCAGGAG < 41bp 1 0.649783016449414 1 0.684191763401031 experiment 0.700433967101172 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10402281 chr19:10402264 nonsynonymous SNV 0.163 0 4 hm5C_associated_SNPs_16937 0 0 1 0 1 Endoplasmic reticulum 1 0.500298880420724 0.631616473197938 0.999402239158552 hm5C_site_18419 DeepMRMD:0.631616473197938;iRNA_m5C:0.999402239158552 18420 chr1 3328710 3328710 1 + G C BLCA 3328714 + 3328694 3328734 41 GGCCAGCCCAAGTTTGGGGGCGGCTTGGCGCCCCCGGGGGC GGCCAGCCCAAGTTTGCGGGCGGCTTGGCGCCCCCGGGGGC < 41bp 1 0.44317294164152 1 0.227868050336838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328714 chr1:3328710 nonsynonymous SNV 0.032 0 17 hm5C_associated_SNPs_16938 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18420 DeepMRMD:1;iRNA_m5C:0.999536712157815 18421 chr1 3328710 3328710 1 + G C BLCA 3328724 + 3328704 3328744 41 AGTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGC AGTTTGCGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGC < 41bp 1 0.206370410224809 1 0.157249689102173 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328724 chr1:3328710 nonsynonymous SNV 0.032 0 7 hm5C_associated_SNPs_16939 0 0 0 0 0 Nucleus 1 0.500231643883992 1 0.999536712232017 hm5C_site_18421 DeepMRMD:1;iRNA_m5C:0.999536712232017 18422 chr1 3328710 3328710 1 + G C BLCA 3328725 + 3328705 3328745 41 GTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCG GTTTGCGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCG < 41bp 1 0.440682996322695 1 0.465359508991241 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328725 chr1:3328710 nonsynonymous SNV 0.032 0 6 hm5C_associated_SNPs_16940 0 0 0 0 0 Nucleus 1 0.500231643921091 1 0.999536712157817 hm5C_site_18422 DeepMRMD:1;iRNA_m5C:0.999536712157817 18423 chr1 3328710 3328710 1 + G C BLCA 3328726 + 3328706 3328746 41 TTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGT TTTGCGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGT < 41bp 1 0.479760751979325 1 0.584349274635315 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328726 chr1:3328710 nonsynonymous SNV 0.032 0 5 hm5C_associated_SNPs_16941 0 0 0 0 0 Nucleus 1 0.500231644316837 0.83130145072937 0.999536711366326 hm5C_site_18423 DeepMRMD:0.83130145072937;iRNA_m5C:0.999536711366326 18424 chr1 3328710 3328710 1 + G C BLCA 3328727 + 3328707 3328747 41 TTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGTG TTGCGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGTG < 41bp 1 0.582802165140386 1 0.79493260383606 experiment 0.834395669719228 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328727 chr1:3328710 nonsynonymous SNV 0.032 0 4 hm5C_associated_SNPs_16942 0 0 0 0 0 Nucleus 1 0.500231643920876 0.41013479232788 0.999536712158247 hm5C_site_18424 DeepMRMD:0.41013479232788;iRNA_m5C:0.999536712158247 18425 chr19 35739844 35739844 1 + C T BLCA 35739838 + 35739818 35739858 41 GGAAGTGGGAAGGGGAGGAGCGTGCACCCCTCCTGGCCTTG GGAAGTGGGAAGGGGAGGAGCGTGCATCCCTCCTGGCCTTG < 41bp 1 0.474310676240025 1 0.443328320980072 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35739838 chr19:35739844 synonymous SNV . 0 27 hm5C_associated_SNPs_16943 0 0 0 0 1 chromatin 1 0.50023164009473 1 0.99953671981054 hm5C_site_18425 DeepMRMD:1;iRNA_m5C:0.99953671981054 18426 chr9 133760714 133760714 1 + C T BLCA 133760722 + 133760702 133760742 41 CGAGTGTCTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGAT CGAGTGTCTCTTTGGAAAACCCGCCAGCCTCCAGAGCGGAT < 41bp 1 0.0615627913581051 1 0.097014456987381 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760722 chr9:133760714 nonsynonymous SNV 1.000 5 13 hm5C_associated_SNPs_16944 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643909204 1 0.999536712181591 hm5C_site_18426 DeepMRMD:1;iRNA_m5C:0.999536712181591 18427 chr9 133760714 133760714 1 + C T BLCA 133760729 + 133760709 133760749 41 CTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGATCGCCAGC CTCTTTGGAAAACCCGCCAGCCTCCAGAGCGGATCGCCAGC < 41bp 1 0.0137738622173651 1 0.102829545736313 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760729 chr9:133760714 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_16945 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_18427 DeepMRMD:1;iRNA_m5C:0.999536712157815 18428 chr1 44128690 44128690 1 + T C BLCA 44128686 + 44128666 44128706 41 CTTTGGCATGTGGAAGACATCCTTTGCTTGGCACACTGAAG CTTTGGCATGTGGAAGACATCCTTCGCTTGGCACACTGAAG < 41bp 1 0.0446852974231482 1 0.0826015174388885 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44128686 chr1:44128690 synonymous SNV . 0 25 hm5C_associated_SNPs_16946 0 0 1 0 1 Nucleus 1 0.50023164156841 1 0.99953671686318 hm5C_site_18428 DeepMRMD:1;iRNA_m5C:0.99953671686318 18429 chr1 109446807 109446807 1 + C G BLCA 109446818 + 109446798 109446838 41 CAAATGGTTCTTGGTCTGAGCTACAGCACAAATAACTCCAT CAAATGGTTGTTGGTCTGAGCTACAGCACAAATAACTCCAT < 41bp 1 0.607538260058799 1 0.408477783203125 experiment 0.784923479882402 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109446818 chr1:109446807 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_16947 0 0 1 0 2 Endoplasmic reticulum 1 0.500231755571069 1 0.999536488857863 hm5C_site_18429 DeepMRMD:1;iRNA_m5C:0.999536488857863 18430 chr16 28950000 28950000 1 + C A BLCA 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTACCAGTCCTATGAGGATATGAG < 41bp 1 0.0470523886194289 1 0.0513176023960114 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950000 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_16948 0 0 0 0 3 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18430 DeepMRMD:1;iRNA_m5C:0.999536712157815 18431 chr16 28950000 28950000 1 + C A BLCA 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTACCAGTCCTATGAGGATATGAGA < 41bp 1 0.0795569424025034 1 0.136116027832031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950000 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_16949 0 0 0 0 3 exosome 1 0.500231643920857 1 0.999536712158286 hm5C_site_18431 DeepMRMD:1;iRNA_m5C:0.999536712158286 18432 chr19 42406712 42406712 1 + G A BLCA 42406702 + 42406682 42406722 41 GTTTGATGGTGCTGAGGGCTCCTGGTTCCAGAAAATCTCCT GTTTGATGGTGCTGAGGGCTCCTGGTTCCAAAAAATCTCCT < 41bp 1 0.324256552490592 1 0.361678123474121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42406702 chr19:42406712 synonymous SNV . 0 31 hm5C_associated_SNPs_16950 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_18432 DeepMRMD:1;iRNA_m5C:0.999536712157816 18433 chr5 33463913 33463913 1 + G A BLCA 33463905 + 33463885 33463925 41 AATGGTAGTTCCAGTGGGACCAACCTGTGATGAATATGCCC AATGGTAGTTCCAGTGGGACCAACCTGTAATGAATATGCCC < 41bp 1 0.308049833895081 1 0.349730789661407 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33463905 chr5:33463913 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_16951 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18433 DeepMRMD:1;iRNA_m5C:0.999536712157815 18434 chr20 30898654 30898654 1 + C A BLCA 30898670 + 30898650 30898690 41 AATTCCAGGAAGAGATTGCTCGGCTCAAGGCCCAGCTGGAA AATTACAGGAAGAGATTGCTCGGCTCAAGGCCCAGCTGGAA < 41bp 1 0.660689437521751 1 0.707834303379059 experiment 0.678621124956498 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898670 chr20:30898654 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_16952 0 0 1 0 1 Ribosome 1 0.500231643921092 0.584331393241882 0.999536712157815 hm5C_site_18434 DeepMRMD:0.584331393241882;iRNA_m5C:0.999536712157815 18435 chr11 2608853 2608853 1 + C A BLCA 2608838 + 2608818 2608858 41 GCTGCCGAGAACCCCGACTCCTCCACCTGGAAGATCTACAT GCTGCCGAGAACCCCGACTCCTCCACCTGGAAGATATACAT < 41bp 1 0.578525584396362 1 0.916970014572144 experiment 0.842948831207276 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2608838 chr11:2608853 synonymous SNV . 0 36 hm5C_associated_SNPs_16953 0 0 0 0 2 Nucleus 1 0.500231643276237 0.166059970855712 0.999536713447525 hm5C_site_18435 DeepMRMD:0.166059970855712;iRNA_m5C:0.999536713447525 18436 chr6 32947780 32947780 1 + G C BLCA 32947785 + 32947765 32947805 41 ATAATCCAAGCCAGGGAGCCCTCTTTACGTGATTCAAACCC ATAATCCAAGCCAGGCAGCCCTCTTTACGTGATTCAAACCC < 41bp 1 0.232229718243859 1 0.401530683040619 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32947785 chr6:32947780 nonsynonymous SNV 0.991 2 16 hm5C_associated_SNPs_16954 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18436 DeepMRMD:1;iRNA_m5C:0.999536712157815 18437 chr10 17277378 17277378 1 + G A BLCA 17277386 + 17277366 17277406 41 CTGCTGGAAGGCGAGGAGAGCAGGTAGGGAACTCAGACTTG CTGCTGGAAGGCAAGGAGAGCAGGTAGGGAACTCAGACTTG < 41bp 1 0.586591764762412 1 0.556146442890167 experiment 0.826816470475177 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277386 chr10:17277378 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_16956 0 0 1 1 1 Ribosome 1 0.500231643921083 0.887707114219666 0.999536712157834 hm5C_site_18437 DeepMRMD:0.887707114219666;iRNA_m5C:0.999536712157834 18438 chr19 42797830 42797830 1 + C G BLCA 42797813 + 42797793 42797833 41 GCCTGGAGAATCGTGGGGAGCCTCCCACTCCTCCCAGCCCG GCCTGGAGAATCGTGGGGAGCCTCCCACTCCTCCCAGGCCG < 41bp 1 0.0419861705173505 1 0.0279693007469177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42797813 chr19:42797830 nonsynonymous SNV 0.975 1 38 hm5C_associated_SNPs_16957 0 0 0 0 1 Cytosol 1 0.50023164391826 1 0.99953671216348 hm5C_site_18438 DeepMRMD:1;iRNA_m5C:0.99953671216348 18439 chr19 42797830 42797830 1 + C G BLCA 42797838 + 42797818 42797858 41 CACTCCTCCCAGCCCGGCCCCAGCTCCAGCTGTAGCCCCTG CACTCCTCCCAGGCCGGCCCCAGCTCCAGCTGTAGCCCCTG < 41bp 1 0.301996359733196 1 0.120302081108093 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CIC ENSG00000079432 CDS Human protein_coding chr19:42797838 chr19:42797830 nonsynonymous SNV 0.975 1 13 hm5C_associated_SNPs_16958 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18439 DeepMRMD:1;iRNA_m5C:0.999536712157815 18440 chr19 45490649 45490649 1 + G A BLCA 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG TGATGAGTTGTACAAGCAGTCAGATGAGGAGCAGGACTCGG < 41bp 1 0.631177281421354 1 0.531290292739868 experiment 0.737645437157291 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490649 nonsynonymous SNV 0.677 2 14 hm5C_associated_SNPs_16959 0 0 1 0 1 Cytosol 1 0.500231646786582 0.937419414520264 0.999536706426836 hm5C_site_18440 DeepMRMD:0.937419414520264;iRNA_m5C:0.999536706426836 18441 chr7 21934388 21934388 1 + C T BLCA 21934397 + 21934377 21934417 41 TTCGGGAAATACGTATATCACTTGAACAACTGGACCTTAGT TTCGGGAAATATGTATATCACTTGAACAACTGGACCTTAGT < 41bp 1 0.187411265976681 1 0.352391570806503 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21934397 chr7:21934388 nonsynonymous SNV 0.687 4 12 hm5C_associated_SNPs_16960 0 0 0 0 1 nucleolus 1 0.500232936597445 1 0.99953412680511 hm5C_site_18441 DeepMRMD:1;iRNA_m5C:0.99953412680511 18442 chr13 48832951 48832951 1 + C G BLCA 48832941 + 48832921 48832961 41 TTCTGAATGTAGGCTGGAACCTATTTGCCTCAGTCCTATCT TTCTGAATGTAGGCTGGAACCTATTTGCCTGAGTCCTATCT < 41bp 1 0.458225769417688 1 0.0257116258144379 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITM2B ENSG00000136156 CDS Human protein_coding chr13:48832941 chr13:48832951 nonsynonymous SNV 0.999 3 31 hm5C_associated_SNPs_16961 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18442 DeepMRMD:1;iRNA_m5C:0.999536712157815 18443 chr17 73695901 73695901 1 + G A BLCA 73695888 + 73695868 73695908 41 TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAA TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATAAAATCAA < 41bp 1 0.143172913284768 1 0.169961422681808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695888 chr17:73695901 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_16962 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18443 DeepMRMD:1;iRNA_m5C:0.999536712157815 18444 chr17 73695901 73695901 1 + G A BLCA 73695896 + 73695876 73695916 41 AAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC AAGAGTTCGGAACATGTCGCCTGATAAAATCAAGATCCCGC < 41bp 1 0.261232353133683 1 0.289749473333359 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695896 chr17:73695901 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_16964 0 0 1 0 2 Cytosol 1 0.500231644341017 1 0.999536711317966 hm5C_site_18444 DeepMRMD:1;iRNA_m5C:0.999536711317966 18445 chr9 131386709 131386709 1 + G A BLCA 131386723 + 131386703 131386743 41 CTGGATGAGAACTCGGCCTTCCTTCAGTTCAACTGGAAGGC CTGGATAAGAACTCGGCCTTCCTTCAGTTCAACTGGAAGGC < 41bp 1 0.0157705002557943 1 0.0562135577201843 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131386723 chr9:131386709 nonsynonymous SNV 0.974 2 7 hm5C_associated_SNPs_16965 0 0 1 0 1 Nucleus 1 0.500231642448518 1 0.999536715102965 hm5C_site_18445 DeepMRMD:1;iRNA_m5C:0.999536715102965 18446 chr9 36204091 36204091 1 + G C BLCA 36204107 + 36204087 36204127 41 AGCAGAGTGGAAAGAAAAGGCAATAAAGGAGCTAGAAGAAT AGCACAGTGGAAAGAAAAGGCAATAAAGGAGCTAGAAGAAT < 41bp 1 0.368306188072634 1 0.202040106058121 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTA ENSG00000122705 CDS Human protein_coding chr9:36204107 chr9:36204091 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_16966 0 0 1 1 2 Ribosome 1 0.500231643920938 1 0.999536712158125 hm5C_site_18446 DeepMRMD:1;iRNA_m5C:0.999536712158125 18447 chr22 41923373 41923373 1 + C T BLCA 41923388 + 41923368 41923408 41 AGCCTCGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGC AGCCTTGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGC < 41bp 1 0.272656086677968 1 0.46632319688797 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41923388 chr22:41923373 nonsynonymous SNV 0.994 4 6 hm5C_associated_SNPs_16967 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18447 DeepMRMD:1;iRNA_m5C:0.999536712157815 18448 chr5 5464640 5464640 1 + C G BLCA 5464638 + 5464618 5464658 41 CACTTCCTGTGCCTGGCCGACTCCCACCCTGTGCATCTGGC CACTTCCTGTGCCTGGCCGACTGCCACCCTGTGCATCTGGC < 41bp 1 0.169077850785256 1 0.246437221765518 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ICE1 ENSG00000164151 CDS Human protein_coding chr5:5464638 chr5:5464640 synonymous SNV . 0 23 hm5C_associated_SNPs_16968 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_18448 DeepMRMD:1;iRNA_m5C:0.999536712157815 18449 chr17 70119082 70119082 1 + G A BLCA 70119073 + 70119053 70119093 41 GCCGACTCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCA GCCGACTCGCCACACTCCTCCTCCGGCATAAGCGAGGTGCA < 41bp 1 0.627699070119316 1 0.782967209815979 experiment 0.744601859761369 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SOX9 ENSG00000125398 CDS Human protein_coding chr17:70119073 chr17:70119082 nonsynonymous SNV 0.997 2 30 hm5C_associated_SNPs_16969 0 0 1 0 1 Cytosol 1 0.500231621239274 0.434065580368042 0.999536757521452 hm5C_site_18449 DeepMRMD:0.434065580368042;iRNA_m5C:0.999536757521452 18450 chr4 30723146 30723146 1 + C A BLCA 30723130 + 30723110 30723150 41 GCTCTCGCTCAGCCTGGCGGCCGCCAAGCAGCTCCTCCGGT GCTCTCGCTCAGCCTGGCGGCCGCCAAGCAGCTCCTACGGT < 41bp 1 0.13598428107401 1 0.112734407186508 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCDH7 ENSG00000169851 CDS Human protein_coding chr4:30723130 chr4:30723146 synonymous SNV . 0 37 hm5C_associated_SNPs_16970 0 0 1 0 0 Ribosome 1 0.500231643923833 1 0.999536712152333 hm5C_site_18450 DeepMRMD:1;iRNA_m5C:0.999536712152333 18451 chr14 56079010 56079010 1 + C T BLCA 56078994 + 56078974 56079014 41 GGAAACCTCCATGAATCCGACTCTGAGAGTGTACCTCGAGA GGAAACCTCCATGAATCCGACTCTGAGAGTGTACCTTGAGA < 41bp 1 0.210846323584143 1 0.115538060665131 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56078994 chr14:56079010 stopgain 0.987 0 37 hm5C_associated_SNPs_16972 0 0 1 0 0 Endoplasmic reticulum 1 0.500231641794787 1 0.999536716410425 hm5C_site_18451 DeepMRMD:1;iRNA_m5C:0.999536716410425 18452 chr17 73750888 73750888 1 + C A BLCA 73750868 + 73750848 73750888 41 ACCACACTGCCCAGGGACTACTCCACCCTCACCTCCGTCTC ACCACACTGCCCAGGGACTACTCCACCCTCACCTCCGTCTA < 41bp 1 0.665762934162715 1 0.831242382526398 experiment 0.668474131674569 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73750868 chr17:73750888 nonsynonymous SNV 0.985 3 41 hm5C_associated_SNPs_16973 0 0 0 0 1 Cytosol 1 0.50023164402107 0.337515234947204 0.99953671195786 hm5C_site_18452 DeepMRMD:0.337515234947204;iRNA_m5C:0.99953671195786 18453 chr10 101715548 101715548 1 + C T BLCA 101715533 - 101715513 101715553 41 GAGAAGAGCTTGGCAGGGCCCGGCACAGAGCCAGATAAAAT GAGAAAAGCTTGGCAGGGCCCGGCACAGAGCCAGATAAAAT < 41bp 1 0.563341169912394 1 0.728595077991486 experiment 0.873317660175213 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNMBP ENSG00000107554 CDS Human protein_coding chr10:101715533 chr10:101715548 synonymous SNV . 0 6 hm5C_associated_SNPs_16974 0 0 0 0 0 Nucleus 1 0.500231492717407 0.542809844017028 0.999537014565185 hm5C_site_18453 DeepMRMD:0.542809844017028;iRNA_m5C:0.999537014565185 18454 chr8 143782008 143782008 1 + G C BLCA 143782018 + 143781998 143782038 41 ACGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC ACGCCAACCTCACTGCGAGACAACGAGATCCAGAGGACTCC < 41bp 1 0.635070030463645 1 0.0983320474624634 experiment 0.729859939072711 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143782018 chr8:143782008 synonymous SNV . 0 11 hm5C_associated_SNPs_16975 0 0 1 0 1 nucleus 1 0.500231643923498 1 0.999536712153003 hm5C_site_18454 DeepMRMD:1;iRNA_m5C:0.999536712153003 18455 chr17 66033495 66033495 1 + G C BLCA 66033483 + 66033463 66033503 41 CTTTTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAAT CTTTTCTCAAGGAAATGAGGCGTCGCAGAATACAGGTCAAT < 41bp 1 0.154894726175384 1 0.0847117602825165 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033483 chr17:66033495 nonsynonymous SNV 0.699 3 33 hm5C_associated_SNPs_16976 0 0 1 0 1 Cytosol 1 0.500231643923376 1 0.999536712153247 hm5C_site_18455 DeepMRMD:1;iRNA_m5C:0.999536712153247 18456 chr17 66033495 66033495 1 + G C BLCA 66033510 + 66033490 66033530 41 GAATAGAGGTCAATGTGGAGCTGAGGAAAGCTAAGAAGGAT GAATACAGGTCAATGTGGAGCTGAGGAAAGCTAAGAAGGAT < 41bp 1 0.582591724021547 1 0.447741091251373 experiment 0.834816551956906 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033510 chr17:66033495 nonsynonymous SNV 0.699 3 6 hm5C_associated_SNPs_16979 0 0 1 0 1 Cytosol 1 0.500231643921097 1 0.999536712157805 hm5C_site_18456 DeepMRMD:1;iRNA_m5C:0.999536712157805 18457 chr5 14482837 14482837 1 + G C BLCA 14482854 + 14482834 14482874 41 AAAGAAGGGCTTCTCCATGCCGGGATTCCTGTTTAAGAACA AAACAAGGGCTTCTCCATGCCGGGATTCCTGTTTAAGAACA < 41bp 1 0.568173311642359 1 0.652683675289154 experiment 0.863653376715282 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14482854 chr5:14482837 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_16980 0 0 1 0 1 Nucleus 1 0.500231643921092 0.694632649421692 0.999536712157815 hm5C_site_18457 DeepMRMD:0.694632649421692;iRNA_m5C:0.999536712157815 18458 chr7 150737372 150737372 1 + C T BLCA 150737364 + 150737344 150737384 41 TTTTCTGACAGGTCCATGGCCAACCTCTCTGTCCTGTTTGG TTTTCTGACAGGTCCATGGCCAACCTCTTTGTCCTGTTTGG < 41bp 1 0.158048972573445 1 0.036786288022995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737364 chr7:150737372 nonsynonymous SNV 0.955 4 29 hm5C_associated_SNPs_16981 0 0 1 0 2 Ribosome 1 0.500231643918333 1 0.999536712163335 hm5C_site_18458 DeepMRMD:1;iRNA_m5C:0.999536712163335 18459 chr1 156756616 156756616 1 + A G BLCA 156756596 + 156756576 156756616 41 TGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTGCTA TGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTGCTG < 41bp 1 0.231980335859255 1 0.212018758058548 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756596 chr1:156756616 nonsynonymous SNV 0.998 3 41 hm5C_associated_SNPs_16982 0 0 1 0 0 Ribosome 1 0.500231643934771 1 0.999536712130459 hm5C_site_18459 DeepMRMD:1;iRNA_m5C:0.999536712130459 18460 chr3 97661173 97661173 1 + G A BLCA 97661188 + 97661168 97661208 41 CACCTGGAGCTAAAGTAGCTCTATGGACTGAACATGGGCAA CACCTAGAGCTAAAGTAGCTCTATGGACTGAACATGGGCAA < 41bp 1 0.197640597027592 1 0.073092132806778 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRYBG3 ENSG00000080200 CDS Human protein_coding chr3:97661188 chr3:97661173 nonsynonymous SNV 0.995 3 6 hm5C_associated_SNPs_16983 0 0 0 1 1 Cytosol 1 0.500231643931794 1 0.999536712136411 hm5C_site_18460 DeepMRMD:1;iRNA_m5C:0.999536712136411 18461 chr20 37154656 37154656 1 + C T BLCA 37154672 + 37154652 37154692 41 GAAACGGACCCCAACAACACCCAAATGATATTAGGTTTGTA GAAATGGACCCCAACAACACCCAAATGATATTAGGTTTGTA < 41bp 1 0.0889109575048024 1 0.249909609556198 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37154672 chr20:37154656 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_16984 0 0 1 0 1 Nucleus 1 0.500231767680991 1 0.999536464638018 hm5C_site_18461 DeepMRMD:1;iRNA_m5C:0.999536464638018 18462 chr1 161138804 161138804 1 + C T BLCA 161138789 + 161138769 161138809 41 TGCTTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCAC TGCTTCCTCTGCAGGGCGGACCCCACAGCCAGACTTAGCAC < 41bp 1 0.269249181982173 1 0.127410054206848 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138789 chr1:161138804 nonsynonymous SNV 0.887 5 36 hm5C_associated_SNPs_16985 0 0 1 0 1 Cytosol 1 0.500231643921688 1 0.999536712156624 hm5C_site_18462 DeepMRMD:1;iRNA_m5C:0.999536712156624 18463 chr1 161138804 161138804 1 + C T BLCA 161138790 + 161138770 161138810 41 GCTTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCACT GCTTCCTCTGCAGGGCGGACCCCACAGCCAGACTTAGCACT < 41bp 1 0.0523144967523149 1 0.11445289850235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138790 chr1:161138804 nonsynonymous SNV 0.887 5 35 hm5C_associated_SNPs_16986 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18463 DeepMRMD:1;iRNA_m5C:0.999536712157815 18464 chr1 161138804 161138804 1 + C T BLCA 161138791 + 161138771 161138811 41 CTTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCACTC CTTCCTCTGCAGGGCGGACCCCACAGCCAGACTTAGCACTC < 41bp 1 0.597705207061453 1 0.474503099918365 experiment 0.804589585877095 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138791 chr1:161138804 nonsynonymous SNV 0.887 5 34 hm5C_associated_SNPs_16987 0 0 1 0 1 Cytosol 1 0.500231644439196 1 0.999536711121609 hm5C_site_18464 DeepMRMD:1;iRNA_m5C:0.999536711121609 18465 chr1 161138804 161138804 1 + C T BLCA 161138792 + 161138772 161138812 41 TTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCACTCA TTCCTCTGCAGGGCGGACCCCACAGCCAGACTTAGCACTCA < 41bp 1 0.399665007377147 1 0.263952076435089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138792 chr1:161138804 nonsynonymous SNV 0.887 5 33 hm5C_associated_SNPs_16988 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_18465 DeepMRMD:1;iRNA_m5C:0.999536712157815 18466 chr9 131345045 131345045 1 + C G BLCA 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATGTGCAGC < 41bp 1 0.119016351123189 1 0.105246275663376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345045 nonsynonymous SNV 0.873 4 35 hm5C_associated_SNPs_16989 0 0 1 0 2 Nucleus 1 0.50023164393427 1 0.99953671213146 hm5C_site_18466 DeepMRMD:1;iRNA_m5C:0.99953671213146 18467 chr22 44547408 44547408 1 + G C BLCA 44547390 + 44547370 44547410 41 TCACTTTTGTGAACAAGCACCTGAACAAGCTGAATTTGGAG TCACTTTTGTGAACAAGCACCTGAACAAGCTGAATTTGCAG < 41bp 1 0.276795764496124 1 0.322241187095642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARVB ENSG00000188677 CDS Human protein_coding chr22:44547390 chr22:44547408 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_16990 0 0 1 0 2 Ribosome 1 0.500231076149444 1 0.999537847701112 hm5C_site_18467 DeepMRMD:1;iRNA_m5C:0.999537847701112 18468 chr18 77802162 77802162 1 + G A BLCA 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT CTTTTGATGTCCCAGCAGACCCTAAGGAATGTGCCACCGAT < 41bp 1 0.278908449025967 1 0.0916878581047058 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802162 synonymous SNV . 0 24 hm5C_associated_SNPs_16991 0 0 1 0 2 Ribosome 1 0.500231442776166 1 0.999537114447669 hm5C_site_18468 DeepMRMD:1;iRNA_m5C:0.999537114447669 18469 chr6 1390656 1390656 1 + C T BLCA 1390666 + 1390646 1390686 41 ACGAGTGCTTCATCAAGCTGCCTAAGGGCCTCGGGCGGCCC ACGAGTGCTTTATCAAGCTGCCTAAGGGCCTCGGGCGGCCC < 41bp 1 0.140841360038619 1 0.161543786525726 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1390666 chr6:1390656 synonymous SNV . 0 11 hm5C_associated_SNPs_16992 0 0 1 0 0 exosome 1 0.50023164392109 1 0.999536712157821 hm5C_site_18469 DeepMRMD:1;iRNA_m5C:0.999536712157821 18470 chr1 90473035 90473035 1 + C A BLCA 90473036 + 90473016 90473056 41 GGTGGTCGATTTGAGAGCTCCTACCGGAATAGCCTTGACTC GGTGGTCGATTTGAGAGCTACTACCGGAATAGCCTTGACTC < 41bp 1 0.621151808474405 1 0.195272356271744 experiment 0.75769638305119 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90473036 chr1:90473035 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_16993 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18470 DeepMRMD:1;iRNA_m5C:0.999536712157815 18471 chr6 30552103 30552103 1 + G C BLCA 30552122 + 30552102 30552142 41 AGAGAAGGTAGAGGAGATGGCGCAGGGGACACGGGCAAAGA ACAGAAGGTAGAGGAGATGGCGCAGGGGACACGGGCAAAGA < 41bp 1 0.47669860836772 1 0.589731693267822 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30552122 chr6:30552103 nonsynonymous SNV 0.993 2 2 hm5C_associated_SNPs_16994 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.820536613464356 0.999536712157815 hm5C_site_18471 DeepMRMD:0.820536613464356;iRNA_m5C:0.999536712157815 18472 chr1 231401129 231401129 1 + G A BLCA 231401132 + 231401112 231401152 41 TGGCAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA TGGCAATAAACTCTACTAGGCTGTATTCTCTGAATATGTAA < 41bp 1 0.498983735970667 1 0.0789030194282532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401132 chr1:231401129 stopgain 1.000 1 18 hm5C_associated_SNPs_16995 0 0 1 0 2 Cytosol 1 0.500231643921102 1 0.999536712157797 hm5C_site_18472 DeepMRMD:1;iRNA_m5C:0.999536712157797 18473 chr18 33785188 33785188 1 + C T BLCA 33785182 + 33785162 33785202 41 AGCAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGT AGCAGCCCTGAGGTTCAGGGCCCAATTATCAATTTTAATGT < 41bp 1 0.284367017999688 1 0.038888156414032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785182 chr18:33785188 synonymous SNV . 0 27 hm5C_associated_SNPs_16996 0 0 0 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_18473 DeepMRMD:1;iRNA_m5C:0.999536712157812 18474 chr18 33785188 33785188 1 + C T BLCA 33785183 + 33785163 33785203 41 GCAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTG GCAGCCCTGAGGTTCAGGGCCCAATTATCAATTTTAATGTG < 41bp 1 0.0738673044483331 1 0.0188310742378235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785183 chr18:33785188 synonymous SNV . 0 26 hm5C_associated_SNPs_16997 0 0 0 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_18474 DeepMRMD:1;iRNA_m5C:0.999536712157812 18475 chr18 33785188 33785188 1 + C T BLCA 33785184 + 33785164 33785204 41 CAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTGC CAGCCCTGAGGTTCAGGGCCCAATTATCAATTTTAATGTGC < 41bp 1 0.0543237571294766 1 0.015964150428772 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785184 chr18:33785188 synonymous SNV . 0 25 hm5C_associated_SNPs_16998 0 0 0 0 1 Ribosome 1 0.500231643954393 1 0.999536712091214 hm5C_site_18475 DeepMRMD:1;iRNA_m5C:0.999536712091214 18476 chr4 170611701 170611701 1 + G C BLCA 170611685 + 170611665 170611705 41 ACTATTTTCTTTTTAGGGTCCTGGTTCTTATATCATGAACT ACTATTTTCTTTTTAGGGTCCTGGTTCTTATATCATCAACT < 41bp 1 0.165873063428202 1 0.19366130232811 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170611685 chr4:170611701 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_16999 0 0 1 0 0 Ribosome 1 0.500231643920799 1 0.999536712158403 hm5C_site_18476 DeepMRMD:1;iRNA_m5C:0.999536712158403 18477 chr14 35579793 35579793 1 + C T BLCA 35579783 - 35579763 35579803 41 ATTAAGAGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA ATTAAGAGAGAAATCAAGAGCTGTCTTTCTACAAAGAAAAA < 41bp 1 0.214657750902045 1 0.105813801288605 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP2R3C ENSG00000092020 CDS Human protein_coding chr14:35579783 chr14:35579793 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_17000 0 0 1 0 2 chromatin 1 0.500231643920995 1 0.999536712158009 hm5C_site_18477 DeepMRMD:1;iRNA_m5C:0.999536712158009 18478 chr6 3019730 3019730 1 + C G BLCA 3019713 + 3019693 3019733 41 TTCTTCCCCTGTGGCTTTAGCATGGCACATTACACTTCTGT TTCTTCCCCTGTGGCTTTAGCATGGCACATTACACTTGTGT < 41bp 1 0.258620657835223 1 0.529265105724335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3019713 chr6:3019730 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_17001 0 0 1 0 1 Ribosome 1 0.500231643921091 0.94146978855133 0.999536712157819 hm5C_site_18478 DeepMRMD:0.94146978855133;iRNA_m5C:0.999536712157819 18479 chr22 30403279 30403279 1 + A G BLCA 30403290 + 30403270 30403310 41 ACTTTCCCAATGGGGGAGACCTTTCTGACGTGGAGTTCGGT ACTTTCCCAGTGGGGGAGACCTTTCTGACGTGGAGTTCGGT < 41bp 1 0.0283965259761144 1 0.0838561058044434 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30403290 chr22:30403279 nonsynonymous SNV 0.977 1 10 hm5C_associated_SNPs_17002 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_18479 DeepMRMD:1;iRNA_m5C:0.999536712157815 18480 chr12 62783261 62783261 1 + A G BLCA 62783266 + 62783246 62783286 41 AGATCTTTGTACAGCATTGTCTGCTTTGTCAGGAATACCTG AGATCTTTGTACAGCGTTGTCTGCTTTGTCAGGAATACCTG < 41bp 1 0.538447502324599 1 0.231389969587326 experiment 0.923104995350803 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62783266 chr12:62783261 synonymous SNV . 0 16 hm5C_associated_SNPs_17003 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18480 DeepMRMD:1;iRNA_m5C:0.999536712157815 18481 chr20 60878630 60878630 1 + G A BLCA 60878643 + 60878623 60878663 41 GGATGACGACCTCAGGCGCGCTCTTTCCAAGCCTGGTGCCA GGATGACAACCTCAGGCGCGCTCTTTCCAAGCCTGGTGCCA < 41bp 1 0.14044603413074 1 0.0158643424510956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60878643 chr20:60878630 synonymous SNV . 0 8 hm5C_associated_SNPs_17004 0 0 1 0 1 Ribosome 1 0.50023164393825 1 0.9995367121235 hm5C_site_18481 DeepMRMD:1;iRNA_m5C:0.9995367121235 18482 chr6 36442577 36442577 1 + G T BLCA 36442596 + 36442576 36442616 41 TGACTATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACA TTACTATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACA < 41bp 1 0.165243010158394 1 0.341740220785141 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KCTD20 ENSG00000112078 CDS Human protein_coding chr6:36442596 chr6:36442577 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_17005 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18482 DeepMRMD:1;iRNA_m5C:0.999536712157815 18483 chr11 64023902 64023902 1 + C T BLCA 64023887 + 64023867 64023907 41 TACCTGACGCTGGAGCAGCTCATGGACTTCATCAACCAGAA TACCTGACGCTGGAGCAGCTCATGGACTTCATCAATCAGAA < 41bp 1 0.362455088751447 1 0.256123930215836 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64023887 chr11:64023902 synonymous SNV . 0 36 hm5C_associated_SNPs_17006 0 0 1 0 1 Ribosome 1 0.500231643910103 1 0.999536712179794 hm5C_site_18483 DeepMRMD:1;iRNA_m5C:0.999536712179794 18484 chr1 11080561 11080561 1 + C T BLCA 11080572 + 11080552 11080592 41 GAGGATGAGCTGCGGGAGTTCTTCTCTCAGTACGGGGATGT GAGGATGAGTTGCGGGAGTTCTTCTCTCAGTACGGGGATGT < 41bp 1 0.505021950828638 1 0.0469268560409546 experiment 0.989956098342725 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TARDBP ENSG00000120948 CDS Human protein_coding chr1:11080572 chr1:11080561 synonymous SNV . 0 10 hm5C_associated_SNPs_17007 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_18484 DeepMRMD:1;iRNA_m5C:0.999536712157815 18485 chr6 7727455 7727455 1 + C T BLCA 7727453 + 7727433 7727473 41 AGATCTTGTCGGTGCTGGGGCTCCCGCACCGGCCCCGGCCC AGATCTTGTCGGTGCTGGGGCTTCCGCACCGGCCCCGGCCC < 41bp 1 0.234421917112493 1 0.19036591053009 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP6 ENSG00000153162 CDS Human protein_coding chr6:7727453 chr6:7727455 synonymous SNV . 0 23 hm5C_associated_SNPs_17008 0 0 0 0 0 Ribosome 1 0.500231643921456 1 0.999536712157089 hm5C_site_18485 DeepMRMD:1;iRNA_m5C:0.999536712157089 18486 chr1 45244268 45244268 1 + G C BLCA 45244255 + 45244235 45244275 41 TACTCTCTTGCAGCGTGCATCGCTTCAAGGCCGGGACAGTG TACTCTCTTGCAGCGTGCATCGCTTCAAGGCCGCGACAGTG < 41bp 1 0.404120817871312 1 0.531110644340515 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45244255 chr1:45244268 nonsynonymous SNV 0.693 4 34 hm5C_associated_SNPs_17009 0 0 1 0 0 Cytosol 1 0.500233566517097 0.93777871131897 0.999532866965806 hm5C_site_18486 DeepMRMD:0.93777871131897;iRNA_m5C:0.999532866965806 18487 chr1 45244268 45244268 1 + G C BLCA 45244279 + 45244259 45244299 41 TCAAGGCCGGGACAGTGTGGCCGAGCAGATGGCTATGTGCT TCAAGGCCGCGACAGTGTGGCCGAGCAGATGGCTATGTGCT < 41bp 1 0.297131290744635 1 0.294850140810013 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45244279 chr1:45244268 nonsynonymous SNV 0.693 4 10 hm5C_associated_SNPs_17010 0 0 1 0 0 Cytosol 1 0.500231644007665 1 0.99953671198467 hm5C_site_18487 DeepMRMD:1;iRNA_m5C:0.99953671198467 18488 chr1 45244268 45244268 1 + G C BLCA 45244284 + 45244264 45244304 41 GCCGGGACAGTGTGGCCGAGCAGATGGCTATGTGCTAGAGG GCCGCGACAGTGTGGCCGAGCAGATGGCTATGTGCTAGAGG < 41bp 1 0.567846467515593 1 0.166399896144867 experiment 0.864307064968814 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45244284 chr1:45244268 nonsynonymous SNV 0.693 4 5 hm5C_associated_SNPs_17011 0 0 1 0 0 Cytosol 1 0.500231268790018 1 0.999537462419964 hm5C_site_18488 DeepMRMD:1;iRNA_m5C:0.999537462419964 18489 chr20 42680112 42680112 1 + C T BLCA 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATCACTGCCGGGGAGCAAGTCAGCGACCCCCTCTCC < 41bp 1 0.458777793576007 1 0.130777895450592 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680112 nonsynonymous SNV 0.745 4 11 hm5C_associated_SNPs_17012 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18489 DeepMRMD:1;iRNA_m5C:0.999536712157815 18490 chr14 102466434 102466434 1 + G T BLCA 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGT < 41bp 1 0.193756508985205 1 0.775957345962524 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466434 stopgain 0.885 1 41 hm5C_associated_SNPs_17013 0 0 1 0 1 Cytosol 1 0.500233252248649 0.448085308074952 0.999533495502703 hm5C_site_18490 DeepMRMD:0.448085308074952;iRNA_m5C:0.999533495502703 18491 chr3 158310367 158310367 1 + G C BLCA 158310369 + 158310349 158310389 41 TGATGGTGAAGATTCTTTGACTGTAAGTTCTTTTTTTTAAG TGATGGTGAAGATTCTTTCACTGTAAGTTCTTTTTTTTAAG < 41bp 1 0.629344029831 1 0.136042207479477 experiment 0.741311940338 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MLF1 ENSG00000178053 CDS Human protein_coding chr3:158310369 chr3:158310367 nonsynonymous SNV 0.869 0 19 hm5C_associated_SNPs_17016 0 0 0 0 1 Cytosol 1 0.500231643924592 1 0.999536712150817 hm5C_site_18491 DeepMRMD:1;iRNA_m5C:0.999536712150817 18492 chr2 32724726 32724726 1 + G A BLCA 32724730 + 32724710 32724750 41 TATTTCTGCCGTGATAGAATCGGTTACATTTTTAGTGCACC TATTTCTGCCGTGATAAAATCGGTTACATTTTTAGTGCACC < 41bp 1 0.0521114097622504 1 0.394257992506027 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32724730 chr2:32724726 nonsynonymous SNV 0.996 4 17 hm5C_associated_SNPs_17017 0 0 1 0 0 Nucleus 1 0.500231643984857 1 0.999536712030286 hm5C_site_18492 DeepMRMD:1;iRNA_m5C:0.999536712030286 18493 chr12 131488773 131488773 1 + C T BLCA 131488788 + 131488768 131488808 41 TTCCTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA TTCCTTCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA < 41bp 1 0.241389734034473 1 0.662658393383026 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488788 chr12:131488773 nonsynonymous SNV 0.011 1 6 hm5C_associated_SNPs_17018 0 0 1 0 1 chromatin 1 0.500231643921092 0.674683213233948 0.999536712157815 hm5C_site_18493 DeepMRMD:0.674683213233948;iRNA_m5C:0.999536712157815 18494 chr12 131488773 131488773 1 + C T BLCA 131488791 + 131488771 131488811 41 CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC CTTCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC < 41bp 1 0.0572642387867869 1 0.0586719214916229 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488791 chr12:131488773 nonsynonymous SNV 0.011 1 3 hm5C_associated_SNPs_17019 0 0 1 0 1 chromatin 1 0.500231643921068 1 0.999536712157863 hm5C_site_18494 DeepMRMD:1;iRNA_m5C:0.999536712157863 18495 chr12 131488773 131488773 1 + C T BLCA 131488792 + 131488772 131488812 41 TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA TTCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA < 41bp 1 0.202190144372529 1 0.359521090984344 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488792 chr12:131488773 nonsynonymous SNV 0.011 1 2 hm5C_associated_SNPs_17020 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18495 DeepMRMD:1;iRNA_m5C:0.999536712157815 18496 chr12 131488773 131488773 1 + C T BLCA 131488793 + 131488773 131488813 41 CCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAG TCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAG < 41bp 1 0.667538478998707 1 0.497197270393372 experiment 0.664923042002587 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488793 chr12:131488773 nonsynonymous SNV 0.011 1 1 hm5C_associated_SNPs_17021 0 0 1 0 1 chromatin 1 0.500231643917886 1 0.999536712164228 hm5C_site_18496 DeepMRMD:1;iRNA_m5C:0.999536712164228 18497 chr4 524279 524279 1 + G A BLCA 524262 + 524242 524282 41 GTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGC GTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACAGGC < 41bp 1 0.295093091144555 1 0.192519515752792 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:524262 chr4:524279 synonymous SNV . 0 38 hm5C_associated_SNPs_17022 0 0 1 2 1 Nucleus 1 0.500227224426794 1 0.999545551146411 hm5C_site_18497 DeepMRMD:1;iRNA_m5C:0.999545551146411 18498 chr19 52705266 52705266 1 + G C BLCA 52705272 + 52705252 52705292 41 AAAGGACCCGAAGTGAGCTTCTGCCTTTCCTTACAGGTAAC AAAGGACCCGAAGTCAGCTTCTGCCTTTCCTTACAGGTAAC < 41bp 1 0.323788321223653 1 0.379449307918549 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705272 chr19:52705266 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_17023 0 0 1 0 2 Ribosome 1 0.500231649894316 1 0.999536700211368 hm5C_site_18498 DeepMRMD:1;iRNA_m5C:0.999536700211368 18499 chr3 37090079 37090079 1 + C T BLCA 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATGTGCCCCCTTTGGAGGGACTGCCTATCTTTATTCTTCGA < 41bp 1 0.39154332160956 1 0.0684399604797363 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090079 synonymous SNV . 0 32 hm5C_associated_SNPs_17024 0 0 1 0 2 Cytosol 1 0.500231644535065 1 0.999536710929869 hm5C_site_18499 DeepMRMD:1;iRNA_m5C:0.999536710929869 18500 chr6 44218130 44218130 1 + G A BLCA 44218121 + 44218101 44218141 41 ATAAAGATGATGAAGAAAAACCCAAGATCGAAGATGTGGGT ATAAAGATGATGAAGAAAAACCCAAGATCAAAGATGTGGGT < 41bp 1 0.565754975441048 1 0.199476003646851 experiment 0.868490049117905 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218121 chr6:44218130 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_17025 0 0 1 0 0 Nucleus 1 0.500231643864597 1 0.999536712270805 hm5C_site_18500 DeepMRMD:1;iRNA_m5C:0.999536712270805 18501 chr17 40997901 40997901 1 + C T BLCA 40997887 + 40997867 40997907 41 TATATTAGTGGGCAAAGGGGCAGTCCAGCTGCTTCCAGGGG TATATTAGTGGGCAAAGGGGCAGTCCAGCTGCTTTCAGGGG < 41bp 1 0.110653128821871 1 0.242184847593307 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AOC2 ENSG00000131480 CDS Human protein_coding chr17:40997887 chr17:40997901 nonsynonymous SNV 0.001 0 35 hm5C_associated_SNPs_17026 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18501 DeepMRMD:1;iRNA_m5C:0.999536712157815 18502 chr7 91981897 91981897 1 + C G BLCA 91981887 + 91981867 91981907 41 AGGGTCAAATACATCTGGATCTGATACACTCAGCTTCCCAT AGGGTCAAATACATCTGGATCTGATACACTGAGCTTCCCAT < 41bp 1 0.24688271451124 1 0.0382098257541656 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:91981887 chr7:91981897 synonymous SNV . 0 31 hm5C_associated_SNPs_17027 0 0 1 0 1 Cytosol 1 0.500230863812108 1 0.999538272375785 hm5C_site_18502 DeepMRMD:1;iRNA_m5C:0.999538272375785 18503 chr10 103294607 103294607 1 + C T BLCA 103294600 + 103294580 103294620 41 GGTGCTGGTCGGACACCGAGCTGCTGTCAATGTTGTAGACT GGTGCTGGTCGGACACCGAGCTGCTGTTAATGTTGTAGACT < 41bp 1 0.445617368329197 1 0.134213507175446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103294600 chr10:103294607 synonymous SNV . 0 28 hm5C_associated_SNPs_17028 0 0 0 0 1 chromatin 1 0.503627960940907 1 0.992744078118186 hm5C_site_18503 DeepMRMD:1;iRNA_m5C:0.992744078118186 18504 chr6 31936655 31936655 1 + G T BLCA 31936653 + 31936633 31936673 41 CCCTTTTTCTTGCAGGTGCTCCGAACCCTGGGTTATGTGGA CCCTTTTTCTTGCAGGTGCTCCTAACCCTGGGTTATGTGGA < 41bp 1 0.13126539469483 1 0.165636956691742 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31936653 chr6:31936655 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_17029 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18504 DeepMRMD:1;iRNA_m5C:0.999536712157815 18505 chr12 62784646 62784646 1 + G A BLCA 62784645 + 62784625 62784665 41 ATTTTTGATTTTACTTAAGCCGATATGTCAAAATATCTACT ATTTTTGATTTTACTTAAGCCAATATGTCAAAATATCTACT < 41bp 1 0.135407122840121 1 0.0540215969085693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient USP15 ENSG00000135655 CDS Human protein_coding chr12:62784645 chr12:62784646 nonsynonymous SNV 0.934 3 22 hm5C_associated_SNPs_17030 0 0 1 0 1 Ribosome 1 0.5002316444103 1 0.9995367111794 hm5C_site_18505 DeepMRMD:1;iRNA_m5C:0.9995367111794 18506 chr2 74077584 74077584 1 + G C BLCA 74077580 + 74077560 74077600 41 GATTACTGCAACACAGAGAACGAAGAAGAACTTTTCCTCAT GATTACTGCAACACAGAGAACGAACAAGAACTTTTCCTCAT < 41bp 1 0.347650460121457 1 0.195281475782394 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74077580 chr2:74077584 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_17031 0 0 1 0 2 Ribosome 1 0.500231644271065 1 0.99953671145787 hm5C_site_18506 DeepMRMD:1;iRNA_m5C:0.99953671145787 18507 chr20 47615021 47615021 1 + G C BLCA 47615033 + 47615013 47615053 41 TGGCATGTGATTGGAGATCACTTCAATAAGGTAACTCTTCA TGGCATGTCATTGGAGATCACTTCAATAAGGTAACTCTTCA < 41bp 1 0.277445170174484 1 0.644370138645172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47615033 chr20:47615021 synonymous SNV . 0 9 hm5C_associated_SNPs_17032 0 0 1 0 1 Cytosol 1 0.500231643921092 0.711259722709656 0.999536712157815 hm5C_site_18507 DeepMRMD:0.711259722709656;iRNA_m5C:0.999536712157815 18508 chr16 2806578 2806578 1 + C G BLCA 2806567 + 2806547 2806587 41 AGCGCAAGCGGCGCGTCGAGCTGCGATGCCTCGAGCTGGAG AGCGCAAGCGGCGCGTCGAGCTGCGATGCCTGGAGCTGGAG < 41bp 1 0.650908431860775 1 0.291789889335632 experiment 0.698183136278451 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806567 chr16:2806578 synonymous SNV . 0 32 hm5C_associated_SNPs_17033 0 0 1 0 1 Nucleus 1 0.500231661693917 1 0.999536676612166 hm5C_site_18508 DeepMRMD:1;iRNA_m5C:0.999536676612166 18509 chr16 2806578 2806578 1 + C G BLCA 2806570 + 2806550 2806590 41 GCAAGCGGCGCGTCGAGCTGCGATGCCTCGAGCTGGAGGAG GCAAGCGGCGCGTCGAGCTGCGATGCCTGGAGCTGGAGGAG < 41bp 1 0.227687667211477 1 0.375866889953613 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806570 chr16:2806578 synonymous SNV . 0 29 hm5C_associated_SNPs_17034 0 0 1 0 1 Nucleus 1 0.500230975223041 1 0.999538049553919 hm5C_site_18509 DeepMRMD:1;iRNA_m5C:0.999538049553919 18510 chr15 68583478 68583478 1 + G A BLCA 68583487 + 68583467 68583507 41 ACTCAAATGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAGC ACTCAAATGAAAATGAGTCTCAAGTGCCTGGCTGCCCGAGC < 41bp 1 0.646853687802146 1 0.832869052886963 experiment 0.706292624395708 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583487 chr15:68583478 synonymous SNV . 0 12 hm5C_associated_SNPs_17037 0 0 1 0 0 Ribosome 1 0.50023164054935 0.334261894226074 0.999536718901299 hm5C_site_18510 DeepMRMD:0.334261894226074;iRNA_m5C:0.999536718901299 18511 chr15 68583478 68583478 1 + G A BLCA 68583493 + 68583473 68583513 41 ATGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCG ATGAAAATGAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCG < 41bp 1 0.212908637222627 1 0.0921900570392609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583493 chr15:68583478 synonymous SNV . 0 6 hm5C_associated_SNPs_17038 0 0 1 0 0 Ribosome 1 0.50023164390603 1 0.99953671218794 hm5C_site_18511 DeepMRMD:1;iRNA_m5C:0.99953671218794 18512 chr15 68583478 68583478 1 + G A BLCA 68583494 + 68583474 68583514 41 TGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGG TGAAAATGAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGG < 41bp 1 0.44006584910212 1 0.468883752822876 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583494 chr15:68583478 synonymous SNV . 0 5 hm5C_associated_SNPs_17039 0 0 1 0 0 Ribosome 1 0.500231648989285 1 0.99953670202143 hm5C_site_18512 DeepMRMD:1;iRNA_m5C:0.99953670202143 18513 chr6 42975953 42975953 1 + C T BLCA 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACGAGATGGAGCATCACAACGGGATTGCTGAG < 41bp 1 0.306978526167837 1 0.0847899615764618 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975953 nonsynonymous SNV 0.946 4 16 hm5C_associated_SNPs_17040 0 0 1 0 2 Ribosome 1 0.50023164420591 1 0.999536711588179 hm5C_site_18513 DeepMRMD:1;iRNA_m5C:0.999536711588179 18514 chr22 38352811 38352811 1 + G C BLCA 38352823 + 38352803 38352843 41 ATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCC ATGTGGAGCAGGATGAAGGGCTAGATGACTTGGAGAATGCC < 41bp 1 0.693849122102234 1 0.549618124961853 experiment 0.612301755795532 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352823 chr22:38352811 nonsynonymous SNV 0.998 1 9 hm5C_associated_SNPs_17041 0 0 1 0 3 Ribosome 1 0.500231643921197 0.900763750076294 0.999536712157605 hm5C_site_18514 DeepMRMD:0.900763750076294;iRNA_m5C:0.999536712157605 18515 chr22 38352811 38352811 1 + G C BLCA 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT CAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT < 41bp 1 0.476397475433558 1 0.173874467611313 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352811 nonsynonymous SNV 0.998 1 1 hm5C_associated_SNPs_17042 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18515 DeepMRMD:1;iRNA_m5C:0.999536712157815 18516 chr7 142459791 142459791 1 + G A BLCA 142459774 + 142459754 142459794 41 AATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCGTGT AATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCATGT < 41bp 1 0.690933133599853 1 0.0701250731945038 experiment 0.618133732800294 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459774 chr7:142459791 nonsynonymous SNV 0.004 5 38 hm5C_associated_SNPs_17044 1 0 0 0 1 Cytosol 1 0.500231613992665 1 0.99953677201467 hm5C_site_18516 DeepMRMD:1;iRNA_m5C:0.99953677201467 Hereditary pancreatitis Hereditary pancreatitis 18517 chr7 142459791 142459791 1 + G A BLCA 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTGCAGTAATCAACGCCCGCATGTCCACCATCTC < 41bp 1 0.58618398139005 1 0.284915864467621 experiment 0.8276320372199 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459791 nonsynonymous SNV 0.004 5 28 hm5C_associated_SNPs_17046 1 0 0 0 1 Cytosol 1 0.500231643938046 1 0.999536712123909 hm5C_site_18517 DeepMRMD:1;iRNA_m5C:0.999536712123909 Hereditary pancreatitis Hereditary pancreatitis 18518 chr7 142459791 142459791 1 + G A BLCA 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTGCAGTAATCAACGCCCGCATGTCCACCATCTCTC < 41bp 1 0.455019081791023 1 0.064426064491272 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459791 nonsynonymous SNV 0.004 5 26 hm5C_associated_SNPs_17047 1 0 0 0 1 Cytosol 1 0.500231644714995 1 0.999536710570009 hm5C_site_18518 DeepMRMD:1;iRNA_m5C:0.999536710570009 Hereditary pancreatitis Hereditary pancreatitis 18519 chr7 142459791 142459791 1 + G A BLCA 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTGCAGTAATCAACGCCCGCATGTCCACCATCTCTCT < 41bp 1 0.616737135578041 1 0.0484356880187988 experiment 0.766525728843919 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459791 nonsynonymous SNV 0.004 5 25 hm5C_associated_SNPs_17048 1 0 0 0 1 Cytosol 1 0.500228799708329 1 0.999542400583342 hm5C_site_18519 DeepMRMD:1;iRNA_m5C:0.999542400583342 Hereditary pancreatitis Hereditary pancreatitis 18520 chr7 142459791 142459791 1 + G A BLCA 142459788 + 142459768 142459808 41 CACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTG CACGTGCAGTAATCAACGCCCGCATGTCCACCATCTCTCTG < 41bp 1 0.560578009731791 1 0.0170938670635223 experiment 0.878843980536418 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459788 chr7:142459791 nonsynonymous SNV 0.004 5 24 hm5C_associated_SNPs_17049 1 0 0 0 1 Cytosol 1 0.500231644017251 1 0.999536711965499 hm5C_site_18520 DeepMRMD:1;iRNA_m5C:0.999536711965499 Hereditary pancreatitis Hereditary pancreatitis 18521 chr7 142459791 142459791 1 + G A BLCA 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CGTGCAGTAATCAACGCCCGCATGTCCACCATCTCTCTGCC < 41bp 1 0.420685603756479 1 0.0465171039104462 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459791 nonsynonymous SNV 0.004 5 22 hm5C_associated_SNPs_17050 1 0 0 0 1 Cytosol 1 0.50023164930858 1 0.99953670138284 hm5C_site_18521 DeepMRMD:1;iRNA_m5C:0.99953670138284 Hereditary pancreatitis Hereditary pancreatitis 18522 chr7 142459791 142459791 1 + G A BLCA 142459795 + 142459775 142459815 41 AGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG AGTAATCAACGCCCGCATGTCCACCATCTCTCTGCCCACCG < 41bp 1 0.394175303788203 1 0.0925235450267792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459795 chr7:142459791 nonsynonymous SNV 0.004 5 17 hm5C_associated_SNPs_17051 1 0 0 0 1 Cytosol 1 0.500231759397736 1 0.999536481204529 hm5C_site_18522 DeepMRMD:1;iRNA_m5C:0.999536481204529 Hereditary pancreatitis Hereditary pancreatitis 18523 chr7 142459791 142459791 1 + G A BLCA 142459798 + 142459778 142459818 41 AATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCC AATCAACGCCCGCATGTCCACCATCTCTCTGCCCACCGCCC < 41bp 1 0.162528395312808 1 0.0353191196918488 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459798 chr7:142459791 nonsynonymous SNV 0.004 5 14 hm5C_associated_SNPs_17052 1 0 0 0 1 Cytosol 1 0.500231643760123 1 0.999536712479755 hm5C_site_18523 DeepMRMD:1;iRNA_m5C:0.999536712479755 Hereditary pancreatitis Hereditary pancreatitis 18524 chr7 142459791 142459791 1 + G A BLCA 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACGCCCGCATGTCCACCATCTCTCTGCCCACCGCCCC < 41bp 1 0.374858634774109 1 0.124049872159958 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459791 nonsynonymous SNV 0.004 5 13 hm5C_associated_SNPs_17053 1 0 0 0 1 Cytosol 1 0.500231642521497 1 0.999536714957007 hm5C_site_18524 DeepMRMD:1;iRNA_m5C:0.999536714957007 Hereditary pancreatitis Hereditary pancreatitis 18525 chr7 142459791 142459791 1 + G A BLCA 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCCCGCATGTCCACCATCTCTCTGCCCACCGCCCCTCC < 41bp 1 0.426694279663449 1 0.142105728387833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459791 nonsynonymous SNV 0.004 5 10 hm5C_associated_SNPs_17054 1 0 0 0 1 Cytosol 1 0.500231643921085 1 0.999536712157831 hm5C_site_18525 DeepMRMD:1;iRNA_m5C:0.999536712157831 Hereditary pancreatitis Hereditary pancreatitis 18526 chr7 142459791 142459791 1 + G A BLCA 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCCCGCATGTCCACCATCTCTCTGCCCACCGCCCCTCCAG < 41bp 1 0.652737921906755 1 0.162465125322342 experiment 0.69452415618649 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459791 nonsynonymous SNV 0.004 5 8 hm5C_associated_SNPs_17055 1 0 0 0 1 Cytosol 1 0.500228129342147 1 0.999543741315706 hm5C_site_18526 DeepMRMD:1;iRNA_m5C:0.999543741315706 Hereditary pancreatitis Hereditary pancreatitis 18527 chr7 142459791 142459791 1 + G A BLCA 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CCCGCATGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC < 41bp 1 0.612261304201641 1 0.433775186538696 experiment 0.775477391596719 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459791 nonsynonymous SNV 0.004 5 6 hm5C_associated_SNPs_17056 1 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18527 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 18528 chr7 142459791 142459791 1 + G A BLCA 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCATGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT < 41bp 1 0.159668803018253 1 0.0248436629772186 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459791 nonsynonymous SNV 0.004 5 3 hm5C_associated_SNPs_17057 1 0 0 0 1 Cytosol 1 0.500231646589875 1 0.99953670682025 hm5C_site_18528 DeepMRMD:1;iRNA_m5C:0.99953670682025 Hereditary pancreatitis Hereditary pancreatitis 18529 chr7 142459791 142459791 1 + G A BLCA 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CATGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG < 41bp 1 0.19351531392433 1 0.0580365061759949 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459791 nonsynonymous SNV 0.004 5 2 hm5C_associated_SNPs_17058 1 0 0 0 1 Cytosol 1 0.500231643921114 1 0.999536712157772 hm5C_site_18529 DeepMRMD:1;iRNA_m5C:0.999536712157772 Hereditary pancreatitis Hereditary pancreatitis 18530 chr7 142459791 142459791 1 + G A BLCA 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG ATGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG < 41bp 1 0.667650418015886 1 0.036198616027832 experiment 0.664699163968228 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459791 nonsynonymous SNV 0.004 5 1 hm5C_associated_SNPs_17059 1 0 0 0 1 Cytosol 1 0.500231643988448 1 0.999536712023104 hm5C_site_18530 DeepMRMD:1;iRNA_m5C:0.999536712023104 Hereditary pancreatitis Hereditary pancreatitis 18531 chr11 764330 764330 1 + C G BLCA 764334 + 764314 764354 41 CACCTGGATGAGAAGTCTTTCCGTTGGTTGCACAACGAGGA CACCTGGATGAGAAGTGTTTCCGTTGGTTGCACAACGAGGA < 41bp 1 0.207982109440549 1 0.486180782318115 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:764334 chr11:764330 nonsynonymous SNV 0.981 2 17 hm5C_associated_SNPs_17060 0 0 1 0 1 Ribosome 1 0.500231643921103 1 0.999536712157794 hm5C_site_18531 DeepMRMD:1;iRNA_m5C:0.999536712157794 18532 chr11 608431 608431 1 + G T BLCA 608425 + 608405 608445 41 AGTCGTGGAGCTCAGGCCCCCTTCCCGGTCCCGCTCCACAT AGTCGTGGAGCTCAGGCCCCCTTCCCTGTCCCGCTCCACAT < 41bp 1 0.163256754207321 1 0.158232182264328 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:608425 chr11:608431 nonsynonymous SNV 0.601 0 27 hm5C_associated_SNPs_17061 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18532 DeepMRMD:1;iRNA_m5C:0.999536712157815 18533 chr1 151006388 151006388 1 + C T BLCA 151006407 + 151006387 151006427 41 TCTCGAAAGAAACTTCTGCCCCTGCTCCAGGAAGCCCTGTC TTTCGAAAGAAACTTCTGCCCCTGCTCCAGGAAGCCCTGTC < 41bp 1 0.144940939644821 1 0.0630764365196228 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:151006407 chr1:151006388 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_17062 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18533 DeepMRMD:1;iRNA_m5C:0.999536712157815 18534 chr17 2278990 2278990 1 + G A BLCA 2278978 + 2278958 2278998 41 ACTCCGTGGCCTCGGGCATCCAGTCAAGCCTAGATGAGGGG ACTCCGTGGCCTCGGGCATCCAGTCAAGCCTAAATGAGGGG < 41bp 1 0.149979605419219 1 0.58681321144104 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2278978 chr17:2278990 nonsynonymous SNV 0.996 4 33 hm5C_associated_SNPs_17063 0 0 1 0 0 Cytosol 1 0.500231611332759 0.82637357711792 0.999536777334482 hm5C_site_18534 DeepMRMD:0.82637357711792;iRNA_m5C:0.999536777334482 18535 chr16 28884772 28884772 1 + G A BLCA 28884771 + 28884751 28884791 41 TTACCATTCCTATCCAGAACCGACCACCTCCCATGACCCAC TTACCATTCCTATCCAGAACCAACCACCTCCCATGACCCAC < 41bp 1 0.21187568551673 1 0.507961094379425 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28884771 chr16:28884772 nonsynonymous SNV 0.989 1 22 hm5C_associated_SNPs_17064 0 0 1 0 1 Cytosol 1 0.500231643921092 0.98407781124115 0.999536712157815 hm5C_site_18535 DeepMRMD:0.98407781124115;iRNA_m5C:0.999536712157815 18536 chr16 28884772 28884772 1 + G A BLCA 28884777 + 28884757 28884797 41 TTCCTATCCAGAACCGACCACCTCCCATGACCCACCCCAGC TTCCTATCCAGAACCAACCACCTCCCATGACCCACCCCAGC < 41bp 1 0.0208993610687418 1 0.216281920671463 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28884777 chr16:28884772 nonsynonymous SNV 0.989 1 16 hm5C_associated_SNPs_17065 0 0 1 0 1 Cytosol 1 0.500231643913106 1 0.999536712173788 hm5C_site_18536 DeepMRMD:1;iRNA_m5C:0.999536712173788 18537 chr9 134026017 134026017 1 + G C BLCA 134026009 + 134025989 134026029 41 TGTGGCTTCTACAGATTGCACACTTTCAGAAGGAGTTGGAA TGTGGCTTCTACAGATTGCACACTTTCACAAGGAGTTGGAA < 41bp 1 0.0863240073114034 1 0.0370836555957794 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134026009 chr9:134026017 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_17066 0 0 1 0 1 Cytosol 1 0.500231643644113 1 0.999536712711774 hm5C_site_18537 DeepMRMD:1;iRNA_m5C:0.999536712711774 18538 chr11 33106597 33106597 1 + C T BLCA 33106587 + 33106567 33106607 41 TTTAAACATACCACTTGAGGCAAAAGGAATCCTGGACAGGA TTTAAACATACCACTTGAGGCAAAAGGAATTCTGGACAGGA < 41bp 1 0.320128287094979 1 0.141355961561203 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CSTF3 ENSG00000176148 CDS Human protein_coding chr11:33106587 chr11:33106597 synonymous SNV . 0 31 hm5C_associated_SNPs_17067 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18538 DeepMRMD:1;iRNA_m5C:0.999536712157815 18539 chr16 2011251 2011251 1 + C T BLCA 2011268 + 2011248 2011288 41 CATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG CATTATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG < 41bp 1 0.614091563100916 1 0.460699200630188 experiment 0.771816873798168 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011268 chr16:2011251 synonymous SNV . 0 4 hm5C_associated_SNPs_17068 0 0 1 0 2 Ribosome 1 0.500231499040983 1 0.999537001918034 hm5C_site_18539 DeepMRMD:1;iRNA_m5C:0.999537001918034 18540 chr16 2011251 2011251 1 + C T BLCA 2011269 + 2011249 2011289 41 ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA ATTATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA < 41bp 1 0.638645775506193 1 0.486008614301682 experiment 0.722708448987615 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011269 chr16:2011251 synonymous SNV . 0 3 hm5C_associated_SNPs_17069 0 0 1 0 2 Ribosome 1 0.500231643991052 1 0.999536712017896 hm5C_site_18540 DeepMRMD:1;iRNA_m5C:0.999536712017896 18541 chr18 21474922 21474922 1 + A T BLCA 21474924 + 21474904 21474944 41 ACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT ACCTGGCCACCATGGGCGTGCAGCTCCGCCTGGTCAAGTCT < 41bp 1 0.154240509332518 1 0.210938394069672 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21474924 chr18:21474922 nonsynonymous SNV 0.973 0 19 hm5C_associated_SNPs_17070 0 0 0 0 1 Cytosol 1 0.500231655002885 1 0.99953668999423 hm5C_site_18541 DeepMRMD:1;iRNA_m5C:0.99953668999423 18542 chr1 180034352 180034352 1 + G A BLCA 180034360 + 180034340 180034380 41 ATCTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA ATCTCCAGCAGTAAAACTAGCAGCATTATGCAGAAACTGAA < 41bp 1 0.496560167266964 1 0.0972406566143036 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180034360 chr1:180034352 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_17071 0 0 1 0 1 Nucleus 1 0.500231756070465 1 0.999536487859069 hm5C_site_18542 DeepMRMD:1;iRNA_m5C:0.999536487859069 18543 chr21 34635155 34635155 1 + G C BLCA 34635140 + 34635120 34635160 41 GGCCATTTCCTAACCTGCCACCGTTGGAAGCCATGGATATG GGCCATTTCCTAACCTGCCACCGTTGGAAGCCATGCATATG < 41bp 1 0.0365743431371736 1 0.0381505787372589 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34635140 chr21:34635155 nonsynonymous SNV 0.004 1 36 hm5C_associated_SNPs_17072 0 0 1 1 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_18543 DeepMRMD:1;iRNA_m5C:0.999536712157814 18544 chr9 106876995 106876995 1 + G C BLCA 106876976 + 106876956 106876996 41 AACTTTTGTATTTCAGGGATCCAGAGAAGAACTGGAATAGA AACTTTTGTATTTCAGGGATCCAGAGAAGAACTGGAATACA < 41bp 1 0.308608857038698 1 0.645601630210876 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106876976 chr9:106876995 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_17073 0 0 1 0 1 Cytosol 1 0.500231643921092 0.708796739578248 0.999536712157815 hm5C_site_18544 DeepMRMD:0.708796739578248;iRNA_m5C:0.999536712157815 18545 chr2 152276738 152276738 1 + G C BLCA 152276742 + 152276722 152276762 41 AATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGG AATTCAAATGGGAGAACAGGCAGTGAGGTGGGCAAAACTGG < 41bp 1 0.318278320844317 1 0.174992352724075 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152276742 chr2:152276738 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_17074 0 0 1 0 1 Nucleus 1 0.50023164392109 1 0.99953671215782 hm5C_site_18545 DeepMRMD:1;iRNA_m5C:0.99953671215782 18546 chr2 238664806 238664806 1 + G A BLCA 238664803 + 238664783 238664823 41 TTTGCTGAAGTCAAGGAGGCCCTGAAGCAAAGAGAGGAAAT TTTGCTGAAGTCAAGGAGGCCCTAAAGCAAAGAGAGGAAAT < 41bp 1 0.0623307555922703 1 0.114193916320801 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238664803 chr2:238664806 synonymous SNV . 0 24 hm5C_associated_SNPs_17075 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18546 DeepMRMD:1;iRNA_m5C:0.999536712157815 18547 chr4 57876570 57876570 1 + G A BLCA 57876563 + 57876543 57876583 41 CTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTCT CTTTTGCGTCTACTCTTTCTCACCTGCATCGTTTAAATTCT < 41bp 1 0.58174052751529 1 0.407169997692108 experiment 0.836518944969421 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57876563 chr4:57876570 nonsynonymous SNV 0.998 5 28 hm5C_associated_SNPs_17077 0 0 1 0 1 Nucleus 1 0.500231644045053 1 0.999536711909893 hm5C_site_18547 DeepMRMD:1;iRNA_m5C:0.999536711909893 18548 chr19 41711905 41711905 1 + C T BLCA 41711910 + 41711890 41711930 41 TCCATCCTGCATGACCCCAACATCTTCAAGCACCCAGAAGA TCCATCCTGCATGACTCCAACATCTTCAAGCACCCAGAAGA < 41bp 1 0.11262503606091 1 0.0672812461853027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41711910 chr19:41711905 nonsynonymous SNV 0.007 1 16 hm5C_associated_SNPs_17078 0 0 0 0 2 Ribosome 1 0.500231647722402 1 0.999536704555197 hm5C_site_18548 DeepMRMD:1;iRNA_m5C:0.999536704555197 18549 chr6 64394374 64394374 1 + C A BLCA 64394368 + 64394348 64394388 41 ATCCGGGAGAAATAGATGTGCCATCTCATGAATTAAATTGT ATCCGGGAGAAATAGATGTGCCATCTAATGAATTAAATTGT < 41bp 1 0.0185028000393018 1 0.102861166000366 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PHF3 ENSG00000118482 CDS Human protein_coding chr6:64394368 chr6:64394374 nonsynonymous SNV 0.998 0 27 hm5C_associated_SNPs_17079 0 0 1 0 0 Cytosol 1 0.500231641161861 1 0.999536717676277 hm5C_site_18549 DeepMRMD:1;iRNA_m5C:0.999536717676277 18550 chr4 3174751 3174751 1 + C A BLCA 3174757 + 3174737 3174777 41 AGTGTGAGGCCAGGCTTGTACCACTACTGCTTCATGGCCCC AGTGTGAGGCCAGGATTGTACCACTACTGCTTCATGGCCCC < 41bp 1 0.163003741836282 1 0.285094141960144 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3174757 chr4:3174751 synonymous SNV . 0 15 hm5C_associated_SNPs_17080 0 0 1 0 0 Cytosol 1 0.500231643930339 1 0.999536712139322 hm5C_site_18550 DeepMRMD:1;iRNA_m5C:0.999536712139322 18551 chrX 41201840 41201840 1 + G C BLCA 41201835 + 41201815 41201855 41 AAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATC AAATTTGAACGTGGTGGAAACAGTCCCTGGTGTGACAAATC < 41bp 1 0.194521891134349 1 0.24224054813385 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201835 chrX:41201840 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_17081 0 0 1 0 2 Nucleus 1 0.500231643921978 1 0.999536712156044 hm5C_site_18551 DeepMRMD:1;iRNA_m5C:0.999536712156044 18552 chrX 41201840 41201840 1 + G C BLCA 41201839 + 41201819 41201859 41 TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGAT TTGAACGTGGTGGAAACAGTCCCTGGTGTGACAAATCAGAT < 41bp 1 0.392736679162534 1 0.118065804243088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201839 chrX:41201840 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_17082 0 0 1 0 2 Nucleus 1 0.500231559546489 1 0.999536880907023 hm5C_site_18552 DeepMRMD:1;iRNA_m5C:0.999536880907023 18553 chrX 41201840 41201840 1 + G C BLCA 41201850 + 41201830 41201870 41 GGAAACAGTCGCTGGTGTGACAAATCAGATGAAGATGATTG GGAAACAGTCCCTGGTGTGACAAATCAGATGAAGATGATTG < 41bp 1 0.269617473306172 1 0.413865804672241 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201850 chrX:41201840 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_17083 0 0 1 0 2 Nucleus 1 0.500231643921368 1 0.999536712157264 hm5C_site_18553 DeepMRMD:1;iRNA_m5C:0.999536712157264 18554 chr7 128846180 128846180 1 + C T BLCA 128846171 + 128846151 128846191 41 CACCTGCTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC CACCTGCTCACCTGGTCACTCCCCTTTGTTCTCACTGTGGC < 41bp 1 0.196287980593114 1 0.0816692411899567 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128846171 chr7:128846180 synonymous SNV . 0 30 hm5C_associated_SNPs_17085 0 0 1 0 1 cytosol 1 0.500231652157029 1 0.999536695685943 hm5C_site_18554 DeepMRMD:1;iRNA_m5C:0.999536695685943 18555 chr7 100151733 100151733 1 + C T BLCA 100151721 + 100151701 100151741 41 TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCACGCTCGGAC TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCATGCTCGGAC < 41bp 1 0.0426070517715215 1 0.0263087153434753 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100151721 chr7:100151733 synonymous SNV . 0 33 hm5C_associated_SNPs_17086 0 0 1 0 1 chromatin 1 0.500231643920557 1 0.999536712158886 hm5C_site_18555 DeepMRMD:1;iRNA_m5C:0.999536712158886 18556 chr2 220503588 220503588 1 + C G BLCA 220503571 + 220503551 220503591 41 CTCGTCCTCATCCTGATCTTCATGGAGACACAGATCACGGC CTCGTCCTCATCCTGATCTTCATGGAGACACAGATCAGGGC < 41bp 1 0.372887948815456 1 0.43029510974884 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503571 chr2:220503588 nonsynonymous SNV 0.904 5 38 hm5C_associated_SNPs_17087 0 0 0 0 1 Cytosol 1 0.500231643232665 1 0.999536713534669 hm5C_site_18556 DeepMRMD:1;iRNA_m5C:0.999536713534669 18557 chr11 122817458 122817458 1 + A G BLCA 122817446 + 122817426 122817466 41 AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAGCTGGAAAA < 41bp 1 0.103531105015943 1 0.086270660161972 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817446 chr11:122817458 synonymous SNV . 0 33 hm5C_associated_SNPs_17088 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_18557 DeepMRMD:1;iRNA_m5C:0.999536712157816 18558 chr1 220928391 220928391 1 + C T BLCA 220928383 + 220928363 220928403 41 TCATTTATGAGAATAACTGCCTGATCTTCAGGGCTCCAGAC TCATTTATGAGAATAACTGCCTGATCTTTAGGGCTCCAGAC < 41bp 1 0.434324503207351 1 0.0650050044059753 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928383 chr1:220928391 synonymous SNV . 0 29 hm5C_associated_SNPs_17089 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18558 DeepMRMD:1;iRNA_m5C:0.999536712157815 18559 chr1 220928391 220928391 1 + C T BLCA 220928388 + 220928368 220928408 41 TATGAGAATAACTGCCTGATCTTCAGGGCTCCAGACATGGA TATGAGAATAACTGCCTGATCTTTAGGGCTCCAGACATGGA < 41bp 1 0.5123775431495 1 0.133397251367569 experiment 0.975244913700999 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928388 chr1:220928391 synonymous SNV . 0 24 hm5C_associated_SNPs_17090 0 0 1 0 1 nucleus 1 0.500231643926787 1 0.999536712146426 hm5C_site_18559 DeepMRMD:1;iRNA_m5C:0.999536712146426 18560 chr22 50861948 50861948 1 + C T BLCA 50861963 + 50861943 50861983 41 CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC CCCGTTTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC < 41bp 1 0.489670938709031 1 0.203811168670654 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50861963 chr22:50861948 synonymous SNV . 0 6 hm5C_associated_SNPs_17091 0 0 1 0 2 Ribosome 1 0.500231645258506 1 0.999536709482989 hm5C_site_18560 DeepMRMD:1;iRNA_m5C:0.999536709482989 18561 chrX 153608140 153608140 1 + C G BLCA 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA CCCAGCTCGTCCGCCGCCTCCTGTTATAGCTTCTCTGGTGA < 41bp 1 0.481468983227885 1 0.118152350187302 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608140 nonsynonymous SNV 0.023 2 23 hm5C_associated_SNPs_17092 0 0 1 0 2 Ribosome 1 0.500231643570613 1 0.999536712858774 hm5C_site_18561 DeepMRMD:1;iRNA_m5C:0.999536712858774 18562 chr9 78772065 78772065 1 + G A BLCA 78772063 + 78772043 78772083 41 GCACGTGTGTGTGGAGAGCACAGACCGACAAATCAAGTAAT GCACGTGTGTGTGGAGAGCACAAACCGACAAATCAAGTAAT < 41bp 1 0.14673469294358 1 0.248692393302917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78772063 chr9:78772065 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_17093 0 0 0 0 1 exosome 1 0.500231648348895 1 0.99953670330221 hm5C_site_18562 DeepMRMD:1;iRNA_m5C:0.99953670330221 18563 chr20 47896941 47896941 1 + G A BLCA 47896942 + 47896922 47896962 41 GCCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG GCCAGTTTCTGTCTGATATACCAGCTTGAGCAGCTCCTTTG < 41bp 1 0.251809932162601 1 0.0702066421508789 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896942 chr20:47896941 . . 0 20 hm5C_associated_SNPs_17094 0 0 1 0 0 unknown 1 0.500231643920968 1 0.999536712158064 hm5C_site_18563 DeepMRMD:1;iRNA_m5C:0.999536712158064 18564 chr17 40646475 40646475 1 + A G BLCA 40646461 + 40646441 40646481 41 TGGATGGTACTGAGGGAGAGCCGGATCCTTTCCCAGAAGAA TGGATGGTACTGAGGGAGAGCCGGATCCTTTCCCGGAAGAA < 41bp 1 0.504101486532507 1 0.426275432109833 experiment 0.991797026934986 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40646461 chr17:40646475 nonsynonymous SNV 0.999 2 35 hm5C_associated_SNPs_17095 0 0 1 0 1 Endoplasmic reticulum 1 0.500232683867061 1 0.999534632265879 hm5C_site_18564 DeepMRMD:1;iRNA_m5C:0.999534632265879 18565 chr14 65194411 65194411 1 + C G BLCA 65194430 + 65194410 65194450 41 TCTACCACCTCCTCGTCGGGCTCCTCCTGTGACAGTCGCAG TGTACCACCTCCTCGTCGGGCTCCTCCTGTGACAGTCGCAG < 41bp 1 0.0972216542078884 1 0.111396163702011 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65194430 chr14:65194411 nonsynonymous SNV 0.020 3 2 hm5C_associated_SNPs_17096 0 0 1 0 0 Nucleus 1 0.500231643114112 1 0.999536713771776 hm5C_site_18565 DeepMRMD:1;iRNA_m5C:0.999536713771776 18566 chr2 135883809 135883809 1 + G A BLCA 135883796 + 135883776 135883816 41 CCTCATCTGACCGAAGGGATCATTGTGGATAATGATGTTTA CCTCATCTGACCGAAGGGATCATTGTGGATAATAATGTTTA < 41bp 1 0.137951268553952 1 0.0823842585086823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883796 chr2:135883809 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_17097 0 0 1 0 2 Cytosol 1 0.500231643920981 1 0.999536712158039 hm5C_site_18566 DeepMRMD:1;iRNA_m5C:0.999536712158039 18567 chr10 17277345 17277345 1 + G C BLCA 17277353 + 17277333 17277373 41 GCCCTTGACATTGAGATTGCCACCTACAGGAAGCTGCTGGA GCCCTTGACATTCAGATTGCCACCTACAGGAAGCTGCTGGA < 41bp 1 0.345082666246274 1 0.17715921998024 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277353 chr10:17277345 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_17098 0 0 1 1 1 Ribosome 1 0.50004242765183 1 0.999915144696341 hm5C_site_18567 DeepMRMD:1;iRNA_m5C:0.999915144696341 18568 chr20 47605103 47605103 1 + G A BLCA 47605120 + 47605100 47605140 41 GAAGAGTATCTCTCAAGCATCTATGAAGAGATAGAAGGCAA GAAAAGTATCTCTCAAGCATCTATGAAGAGATAGAAGGCAA < 41bp 1 0.209718563365088 1 0.159062772989273 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47605120 chr20:47605103 nonsynonymous SNV 0.983 3 4 hm5C_associated_SNPs_17100 0 0 1 0 1 Cytosol 1 0.50023161185625 1 0.9995367762875 hm5C_site_18568 DeepMRMD:1;iRNA_m5C:0.9995367762875 18569 chr12 989996 989996 1 + C T BLCA 989989 + 989969 990009 41 ATTCTACAGTCCTATCCCCTCCCATGCCGACAGAAGTACTG ATTCTACAGTCCTATCCCCTCCCATGCTGACAGAAGTACTG < 41bp 1 0.115781065041841 1 0.264963328838348 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WNK1 ENSG00000060237 CDS Human protein_coding chr12:989989 chr12:989996 nonsynonymous SNV 0.995 3 28 hm5C_associated_SNPs_17101 0 0 1 0 0 Ribosome 1 0.500231643950343 1 0.999536712099314 hm5C_site_18569 DeepMRMD:1;iRNA_m5C:0.999536712099314 18570 chr9 33313681 33313681 1 + C T BLCA 33313662 + 33313642 33313682 41 GTCTTTACAGGCACACAGTTCGCTGTGGTCAGGCTGTCTCA GTCTTTACAGGCACACAGTTCGCTGTGGTCAGGCTGTCTTA < 41bp 1 0.45104910767639 1 0.409150034189224 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33313662 chr9:33313681 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_17102 0 0 1 0 1 Nucleus 1 0.500328845877152 1 0.999342308245695 hm5C_site_18570 DeepMRMD:1;iRNA_m5C:0.999342308245695 18571 chr1 153701122 153701122 1 + G A BLCA 153701109 + 153701089 153701129 41 TTCCCGGCTCCTGGCTGCAGCCATGGAGTTGCAGAAGGGAA TTCCCGGCTCCTGGCTGCAGCCATGGAGTTGCAAAAGGGAA < 41bp 1 0.114349902711986 1 0.325773477554321 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153701109 chr1:153701122 synonymous SNV . 0 34 hm5C_associated_SNPs_17103 0 0 0 0 1 chromatin 1 0.500231643888144 1 0.999536712223712 hm5C_site_18571 DeepMRMD:1;iRNA_m5C:0.999536712223712 18572 chr10 135197564 135197564 1 + C T BLCA 135197583 + 135197563 135197603 41 TCTTCCTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC TTTTCCTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC < 41bp 1 0.0574971961780728 1 0.0325770974159241 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197583 chr10:135197564 synonymous SNV . 0 2 hm5C_associated_SNPs_17104 0 0 0 1 1 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_18572 DeepMRMD:1;iRNA_m5C:0.999536712157815 18573 chr6 44221299 44221299 1 + C T BLCA 44221288 + 44221268 44221308 41 CAGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGAT CAGTTCCTGATGAGATCCCCCCTCTCGAGGGTGATGAGGAT < 41bp 1 0.0518558921969372 1 0.0597387552261353 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221288 chr6:44221299 synonymous SNV . 0 32 hm5C_associated_SNPs_17105 0 0 1 0 1 Nucleus 1 0.500231643492695 1 0.99953671301461 hm5C_site_18573 DeepMRMD:1;iRNA_m5C:0.99953671301461 18574 chr6 44221299 44221299 1 + C T BLCA 44221289 + 44221269 44221309 41 AGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATG AGTTCCTGATGAGATCCCCCCTCTCGAGGGTGATGAGGATG < 41bp 1 0.222625194867409 1 0.182693898677826 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221289 chr6:44221299 synonymous SNV . 0 31 hm5C_associated_SNPs_17106 0 0 1 0 1 Nucleus 1 0.500231754299088 1 0.999536491401825 hm5C_site_18574 DeepMRMD:1;iRNA_m5C:0.999536491401825 18575 chr3 142840871 142840871 1 + A G BLCA 142840885 + 142840865 142840905 41 GCTAAGACGCTGCAGACAGCCCTGCAGCCCCCTGACTGGCT GCTAAGGCGCTGCAGACAGCCCTGCAGCCCCCTGACTGGCT < 41bp 1 0.105743033239868 1 0.0820282697677612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840885 chr3:142840871 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_17107 0 0 0 0 0 cytosol 1 0.500231675847435 1 0.99953664830513 hm5C_site_18575 DeepMRMD:1;iRNA_m5C:0.99953664830513 18576 chr22 38201996 38201996 1 + A C BLCA 38202011 + 38201991 38202031 41 AGAAGAAGCTGGCTGCCACGCCCAAGAAAGCCAAAAAACCC AGAAGCAGCTGGCTGCCACGCCCAAGAAAGCCAAAAAACCC < 41bp 1 0.508413205911354 1 0.41336265206337 experiment 0.983173588177292 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient H1F0 ENSG00000189060 CDS Human protein_coding chr22:38202011 chr22:38201996 nonsynonymous SNV 0.998 0 6 hm5C_associated_SNPs_17108 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_18576 DeepMRMD:1;iRNA_m5C:0.999536712157816 18577 chrX 123224564 123224564 1 + G A BLCA 123224558 + 123224538 123224578 41 AGATTACGGCCTGAGGATAGCTTCATGAGTGTTTATCCAAT AGATTACGGCCTGAGGATAGCTTCATAAGTGTTTATCCAAT < 41bp 1 0.476227110201939 1 0.141875803470612 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123224558 chrX:123224564 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_17109 0 0 1 0 1 Nucleus 1 0.50023164392275 1 0.9995367121545 hm5C_site_18577 DeepMRMD:1;iRNA_m5C:0.9995367121545 18578 chr2 241513629 241513629 1 + C T BLCA 241513620 + 241513600 241513640 41 ATCTCCTCCATCCTGGAGAGCGATGAGTTCCTGGTCATCGA ATCTCCTCCATCCTGGAGAGCGATGAGTTTCTGGTCATCGA < 41bp 1 0.163828562249076 1 0.065881609916687 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241513620 chr2:241513629 synonymous SNV . 0 30 hm5C_associated_SNPs_17110 0 0 1 0 1 chromatin 1 0.500231643921408 1 0.999536712157183 hm5C_site_18578 DeepMRMD:1;iRNA_m5C:0.999536712157183 18579 chr11 66627386 66627386 1 + G A BLCA 66627381 + 66627361 66627401 41 GTGGCCTTGCTGGTTCGGGGCCGGGGGGCCGGAAATGGCCG GTGGCCTTGCTGGTTCGGGGCCGGGAGGCCGGAAATGGCCG < 41bp 1 0.550272320812992 1 0.519057393074036 experiment 0.899455358374015 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627381 chr11:66627386 nonsynonymous SNV 0.960 0 26 hm5C_associated_SNPs_17111 0 0 0 0 0 Ribosome 1 0.500231642444297 0.961885213851928 0.999536715111406 hm5C_site_18579 DeepMRMD:0.961885213851928;iRNA_m5C:0.999536715111406 18580 chr16 50655557 50655557 1 + G A BLCA 50655547 + 50655527 50655567 41 GAGAAGACTGACGGGCTGGGCAGCGGAGATGAGAAGAAGAT GAGAAGACTGACGGGCTGGGCAGCGGAGATAAGAAGAAGAT < 41bp 1 0.517512744226114 1 0.556674003601074 experiment 0.964974511547771 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NKD1 ENSG00000140807 CDS Human protein_coding chr16:50655547 chr16:50655557 nonsynonymous SNV 0.845 2 31 hm5C_associated_SNPs_17112 0 0 1 0 2 chromatin 1 0.500231644012281 0.886651992797852 0.999536711975438 hm5C_site_18580 DeepMRMD:0.886651992797852;iRNA_m5C:0.999536711975438 18581 chr11 33628221 33628221 1 + A G BLCA 33628214 + 33628194 33628234 41 GAGTGACGAAGAGGAGGGAGCGGTTCTATTTGACAACTCCA GAGTGACGAAGAGGAGGGAGCGGTTCTGTTTGACAACTCCA < 41bp 1 0.122352352450533 1 0.203569382429123 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33628214 chr11:33628221 synonymous SNV . 0 28 hm5C_associated_SNPs_17113 0 0 0 0 1 exosome 1 0.500231643921109 1 0.999536712157781 hm5C_site_18581 DeepMRMD:1;iRNA_m5C:0.999536712157781 18582 chr14 56078992 56078992 1 + G A BLCA 56078994 + 56078974 56079014 41 GGAAACCTCCATGAATCCGACTCTGAGAGTGTACCTCGAGA GGAAACCTCCATGAATCCAACTCTGAGAGTGTACCTCGAGA < 41bp 1 0.278102588001319 1 0.0774827301502228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56078994 chr14:56078992 nonsynonymous SNV 0.997 4 19 hm5C_associated_SNPs_17114 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_18582 DeepMRMD:1;iRNA_m5C:0.999536712157815 18583 chr20 57466824 57466824 1 + G A BLCA 57466815 + 57466795 57466835 41 GGAACAGTAAGACCGAGGACCAGCGCAACGAGGAGAAGGCG GGAACAGTAAGACCGAGGACCAGCGCAACAAGGAGAAGGCG < 41bp 1 0.482753816134225 1 0.75343906879425 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57466815 chr20:57466824 nonsynonymous SNV 0.995 1 30 hm5C_associated_SNPs_17115 0 0 1 0 1 Cytosol 1 0.500231643942548 0.4931218624115 0.999536712114904 hm5C_site_18583 DeepMRMD:0.4931218624115;iRNA_m5C:0.999536712114904 18584 chr20 57466824 57466824 1 + G A BLCA 57466818 + 57466798 57466838 41 ACAGTAAGACCGAGGACCAGCGCAACGAGGAGAAGGCGCAG ACAGTAAGACCGAGGACCAGCGCAACAAGGAGAAGGCGCAG < 41bp 1 0.644035116866341 1 0.70184326171875 experiment 0.711929766267317 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57466818 chr20:57466824 nonsynonymous SNV 0.995 1 27 hm5C_associated_SNPs_17116 0 0 1 0 1 Cytosol 1 0.500231644791623 0.5963134765625 0.999536710416755 hm5C_site_18584 DeepMRMD:0.5963134765625;iRNA_m5C:0.999536710416755 18585 chr9 127101893 127101893 1 + C T BLCA 127101884 + 127101864 127101904 41 TACATGTCACCGGAGAGGATCCATGAGAACGGCTACAACTT TACATGTCACCGGAGAGGATCCATGAGAATGGCTACAACTT < 41bp 1 0.0844329715483351 1 0.0287351310253143 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NEK6 ENSG00000119408 CDS Human protein_coding chr9:127101884 chr9:127101893 synonymous SNV . 0 30 hm5C_associated_SNPs_17117 0 0 1 0 2 Cytosol 1 0.500231643921303 1 0.999536712157393 hm5C_site_18585 DeepMRMD:1;iRNA_m5C:0.999536712157393 18586 chr8 121259915 121259915 1 + C T BLCA 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTATGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.075377417905463 1 0.0722400546073914 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259915 nonsynonymous SNV 0.996 2 6 hm5C_associated_SNPs_17118 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18586 DeepMRMD:1;iRNA_m5C:0.999536712157815 18587 chr8 121259915 121259915 1 + C T BLCA 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ATGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.376274832210997 1 0.151404619216919 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259915 nonsynonymous SNV 0.996 2 2 hm5C_associated_SNPs_17119 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18587 DeepMRMD:1;iRNA_m5C:0.999536712157815 18588 chr15 89172609 89172609 1 + G A BLCA 89172606 + 89172586 89172626 41 CCCGGCCTCCACACCCGGGCCCGGGTCTCTCTAAAGGACCT CCCGGCCTCCACACCCGGGCCCGAGTCTCTCTAAAGGACCT < 41bp 1 0.189761714067791 1 0.121757656335831 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AEN ENSG00000181026 CDS Human protein_coding chr15:89172606 chr15:89172609 synonymous SNV . 0 24 hm5C_associated_SNPs_17120 0 0 1 0 1 Ribosome 1 0.50023164875958 1 0.99953670248084 hm5C_site_18588 DeepMRMD:1;iRNA_m5C:0.99953670248084 18589 chrX 73043047 73043047 1 + C A BLCA 73043029 - 73043009 73043049 41 AGGAGACTGATAAAAGGGCTCAGGGTTTGTTCTTTAATTCA AGTAGACTGATAAAAGGGCTCAGGGTTTGTTCTTTAATTCA < 41bp 1 0.406323669809939 1 0.506540358066559 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043029 chrX:73043047 . . 0 3 hm5C_associated_SNPs_17121 0 0 1 3 0 unknown 1 0.500231534162444 0.986919283866882 0.999536931675112 hm5C_site_18589 DeepMRMD:0.986919283866882;iRNA_m5C:0.999536931675112 18590 chr19 36216719 36216719 1 + G A BLCA 36216704 + 36216684 36216724 41 TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGAGTGAG < 41bp 1 0.152675606119282 1 0.395065158605576 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216704 chr19:36216719 stopgain 1.000 1 36 hm5C_associated_SNPs_17122 0 0 0 0 2 chromatin 1 0.500231643953761 1 0.999536712092478 hm5C_site_18590 DeepMRMD:1;iRNA_m5C:0.999536712092478 18591 chr1 145518173 145518173 1 + A G BLCA 145518156 + 145518136 145518176 41 GTTGTCCTGAGATTCTGCATCACTGTTAGTCACCTCAATCG GTTGTCCTGAGATTCTGCATCACTGTTAGTCACCTCAGTCG < 41bp 1 0.228927719353061 1 0.0464172661304474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145518156 chr1:145518173 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_17123 0 0 1 0 1 Ribosome 1 0.500231643917857 1 0.999536712164285 hm5C_site_18591 DeepMRMD:1;iRNA_m5C:0.999536712164285 18592 chr3 47447452 47447452 1 + C T BLCA 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTTGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC < 41bp 1 0.0685493337336398 1 0.0189373195171356 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447452 synonymous SNV . 0 5 hm5C_associated_SNPs_17124 0 0 1 0 3 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18592 DeepMRMD:1;iRNA_m5C:0.999536712157815 18593 chr1 206653236 206653236 1 + G A BLCA 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGACGTCCCCAAGTTCATCCCCAAAGTGGACCTGCAGGCGG < 41bp 1 0.481202933295624 1 0.387946605682373 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653236 nonsynonymous SNV 0.874 0 17 hm5C_associated_SNPs_17127 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18593 DeepMRMD:1;iRNA_m5C:0.999536712157815 18594 chr5 149758896 149758896 1 + G A BLCA 149758892 + 149758872 149758912 41 CGTGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGG CGTGGCTACAGCAGCTCAGGCCCAAACAGGGCCAGAGGAGG < 41bp 1 0.136543402182519 1 0.39550369977951 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758892 chr5:149758896 synonymous SNV . 0 25 hm5C_associated_SNPs_17128 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18594 DeepMRMD:1;iRNA_m5C:0.999536712157815 18595 chr5 149758896 149758896 1 + G A BLCA 149758893 + 149758873 149758913 41 GTGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGA GTGGCTACAGCAGCTCAGGCCCAAACAGGGCCAGAGGAGGA < 41bp 1 0.0950905866083438 1 0.254747807979584 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758893 chr5:149758896 synonymous SNV . 0 24 hm5C_associated_SNPs_17129 0 0 1 0 1 Nucleus 1 0.500231643920946 1 0.999536712158107 hm5C_site_18595 DeepMRMD:1;iRNA_m5C:0.999536712158107 18596 chr5 149758896 149758896 1 + G A BLCA 149758894 + 149758874 149758914 41 TGGCTACAGCAGCTCAGGCCCAGACAGGGCCAGAGGAGGAC TGGCTACAGCAGCTCAGGCCCAAACAGGGCCAGAGGAGGAC < 41bp 1 0.0800589172248114 1 0.303800821304321 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758894 chr5:149758896 synonymous SNV . 0 23 hm5C_associated_SNPs_17130 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18596 DeepMRMD:1;iRNA_m5C:0.999536712157815 18597 chr5 149758896 149758896 1 + G A BLCA 149758903 + 149758883 149758923 41 CAGCTCAGGCCCAGACAGGGCCAGAGGAGGACTCAGGGAGC CAGCTCAGGCCCAAACAGGGCCAGAGGAGGACTCAGGGAGC < 41bp 1 0.289723173510097 1 0.541335105895996 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758903 chr5:149758896 synonymous SNV . 0 14 hm5C_associated_SNPs_17131 0 0 1 0 1 Nucleus 1 0.500231614847311 0.917329788208008 0.999536770305378 hm5C_site_18597 DeepMRMD:0.917329788208008;iRNA_m5C:0.999536770305378 18598 chr5 149758896 149758896 1 + G A BLCA 149758914 + 149758894 149758934 41 CAGACAGGGCCAGAGGAGGACTCAGGGAGCAGTGAGGAGGA CAAACAGGGCCAGAGGAGGACTCAGGGAGCAGTGAGGAGGA < 41bp 1 0.500976300045705 1 0.5937260389328 experiment 0.998047399908589 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758914 chr5:149758896 synonymous SNV . 0 3 hm5C_associated_SNPs_17132 0 0 1 0 1 Nucleus 1 0.500231643895637 0.8125479221344 0.999536712208725 hm5C_site_18598 DeepMRMD:0.8125479221344;iRNA_m5C:0.999536712208725 18599 chr11 65055264 65055264 1 + G A BLCA 65055284 + 65055264 65055304 41 GACCTGATTGCTGTCATCAACCATGACCGGCCAGATGTCTG AACCTGATTGCTGTCATCAACCATGACCGGCCAGATGTCTG < 41bp 1 0.111400751825912 1 0.160529851913452 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65055284 chr11:65055264 nonsynonymous SNV 0.829 4 1 hm5C_associated_SNPs_17134 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643740171 1 0.999536712519658 hm5C_site_18599 DeepMRMD:1;iRNA_m5C:0.999536712519658 18600 chr22 38021890 38021890 1 + G A BLCA 38021903 + 38021883 38021923 41 CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG CCCTGGCAAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG < 41bp 1 0.631578930452668 1 0.067538857460022 experiment 0.736842139094665 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021903 chr22:38021890 nonsynonymous SNV 0.004 0 8 hm5C_associated_SNPs_17135 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18600 DeepMRMD:1;iRNA_m5C:0.999536712157815 18601 chr6 7578018 7578018 1 + G C BLCA 7578027 + 7578007 7578047 41 TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGGA TGCAGGATTATCAGCTCCAGCTGGCCTCATACACCTCAGGA < 41bp 1 0.234624771714775 1 0.553164958953857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DSP ENSG00000096696 CDS Human protein_coding chr6:7578027 chr6:7578018 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_17136 0 0 1 0 1 Nucleus 1 0.500231643933115 0.893670082092286 0.99953671213377 hm5C_site_18601 DeepMRMD:0.893670082092286;iRNA_m5C:0.99953671213377 18602 chr20 55049784 55049784 1 + A T BLCA 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT GTCATTGAATTTCTCTTGGACAAATCTGCAGTAAAGGCTCT < 41bp 1 0.138341324472692 1 0.20772659778595 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049784 nonsynonymous SNV 0.999 2 32 hm5C_associated_SNPs_17137 0 0 1 0 2 Ribosome 1 0.500231643921105 1 0.999536712157791 hm5C_site_18602 DeepMRMD:1;iRNA_m5C:0.999536712157791 18603 chr20 55049783 55049783 1 + G A BLCA 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT GTCATTGAATTTCTCTTGGACAAATCTGCAAAAAAGGCTCT < 41bp 1 0.138337384988764 1 0.158275634050369 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049783 nonsynonymous SNV 0.997 1 31 hm5C_associated_SNPs_17138 0 0 1 0 2 Ribosome 1 0.500231643921148 1 0.999536712157704 hm5C_site_18603 DeepMRMD:1;iRNA_m5C:0.999536712157704 18604 chr11 43380533 43380533 1 + G C BLCA 43380532 + 43380512 43380552 41 CGGCAGTAGGGGTTCGTGGCCGGTACGAGCTGCCGCCTTGC CGGCAGTAGGGGTTCGTGGCCCGTACGAGCTGCCGCCTTGC < 41bp 1 0.678531665695092 1 0.12184864282608 experiment 0.642936668609815 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC17 ENSG00000052841 CDS Human protein_coding chr11:43380532 chr11:43380533 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_17139 0 0 1 0 0 Nucleus 1 0.500231639979101 1 0.999536720041797 hm5C_site_18604 DeepMRMD:1;iRNA_m5C:0.999536720041797 18605 chr3 184021746 184021746 1 + T C BLCA 184021744 + 184021724 184021764 41 GCTCTTTGTAGTCAGGAGCTCTTCTTGCCTGTGGCATAGTG GCTCTTTGTAGTCAGGAGCTCTCCTTGCCTGTGGCATAGTG < 41bp 1 0.39542540178574 1 0.476438522338867 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021744 chr3:184021746 synonymous SNV . 0 23 hm5C_associated_SNPs_17140 0 0 1 0 1 Ribosome 1 0.500231643918622 1 0.999536712162756 hm5C_site_18605 DeepMRMD:1;iRNA_m5C:0.999536712162756 18606 chr7 76110031 76110031 1 + G C BLCA 76110024 + 76110004 76110044 41 GCCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGC GCCCACAGCATCCCCTTGGGCCAGGCACACCCCTCGCTGGC < 41bp 1 0.419591015506493 1 0.4757339656353 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110024 chr7:76110031 nonsynonymous SNV 0.998 4 28 hm5C_associated_SNPs_17141 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_18606 DeepMRMD:1;iRNA_m5C:0.999536712157814 18607 chr7 76110031 76110031 1 + G C BLCA 76110025 + 76110005 76110045 41 CCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCC CCCACAGCATCCCCTTGGGCCAGGCACACCCCTCGCTGGCC < 41bp 1 0.327068568127898 1 0.395050078630447 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110025 chr7:76110031 nonsynonymous SNV 0.998 4 27 hm5C_associated_SNPs_17142 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18607 DeepMRMD:1;iRNA_m5C:0.999536712157815 18608 chr7 76110031 76110031 1 + G C BLCA 76110029 + 76110009 76110049 41 CAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCCCCTT CAGCATCCCCTTGGGCCAGGCACACCCCTCGCTGGCCCCTT < 41bp 1 0.15600869690561 1 0.174778074026108 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110029 chr7:76110031 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_17143 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18608 DeepMRMD:1;iRNA_m5C:0.999536712157815 18609 chr11 65273616 65273616 1 + C T BLCA 65273607 + 65273587 65273627 41 AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTT AGATGCTGGTGGTTGGCACTCCTGGTTTCTAGGACGGGGTT < 41bp 1 0.392310509451112 1 0.54178649187088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273607 chr11:65273616 . . 0 30 hm5C_associated_SNPs_17144 0 0 0 1 0 unknown 1 0.500231643921092 0.91642701625824 0.999536712157815 hm5C_site_18609 DeepMRMD:0.91642701625824;iRNA_m5C:0.999536712157815 18610 chr11 65273616 65273616 1 + C T BLCA 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGGCACTCCTGGTTTCTAGGACGGGGTTC < 41bp 1 0.610428035656625 1 0.549972951412201 experiment 0.779143928686749 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273616 . . 0 29 hm5C_associated_SNPs_17145 0 0 0 1 0 unknown 1 0.500231640135063 0.900054097175598 0.999536719729874 hm5C_site_18610 DeepMRMD:0.900054097175598;iRNA_m5C:0.999536719729874 18611 chr9 78506220 78506220 1 + C G BLCA 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTGAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT < 41bp 1 0.0590378842348407 1 0.0631242990493774 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506220 synonymous SNV . 0 6 hm5C_associated_SNPs_17146 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18611 DeepMRMD:1;iRNA_m5C:0.999536712157815 18612 chr16 70564782 70564782 1 + G C BLCA 70564775 + 70564755 70564795 41 CATGTAGTTGGAGTAGATGTCGGATTTGAAAATCCAATGTT CATGTAGTTGGAGTAGATGTCGGATTTCAAAATCCAATGTT < 41bp 1 0.457049664809952 1 0.7046138048172 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70564775 chr16:70564782 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_17147 0 0 1 0 1 Cytosol 1 0.500231643921093 0.5907723903656 0.999536712157814 hm5C_site_18612 DeepMRMD:0.5907723903656;iRNA_m5C:0.999536712157814 18613 chr1 154317147 154317147 1 + C T BLCA 154317162 + 154317142 154317182 41 TCATCCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA TCATCTCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA < 41bp 1 0.360219066408147 1 0.415726780891418 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317162 chr1:154317147 synonymous SNV . 0 6 hm5C_associated_SNPs_17148 0 0 1 0 1 chromatin 1 0.500231643934328 1 0.999536712131345 hm5C_site_18613 DeepMRMD:1;iRNA_m5C:0.999536712131345 18614 chr11 65273615 65273615 1 + C T BLCA 65273607 + 65273587 65273627 41 AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTT AGATGCTGGTGGTTGGCACTCCTGGTTTTCAGGACGGGGTT < 41bp 1 0.424398071254856 1 0.444121569395065 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273607 chr11:65273615 . . 0 29 hm5C_associated_SNPs_17150 0 0 0 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_18614 DeepMRMD:1;iRNA_m5C:0.999536712157815 18615 chr11 65273615 65273615 1 + C T BLCA 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGGCACTCCTGGTTTTCAGGACGGGGTTC < 41bp 1 0.589697864977107 1 0.48072612285614 experiment 0.820604270045785 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273615 . . 0 28 hm5C_associated_SNPs_17151 0 0 0 1 0 unknown 1 0.500232269441756 1 0.999535461116488 hm5C_site_18615 DeepMRMD:1;iRNA_m5C:0.999535461116488 18616 chr18 13056643 13056643 1 + G A BLCA 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTCTATTGGTACAAACTGTGGAATTGAACCAT < 41bp 1 0.0936724991858668 1 0.259611248970032 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056643 nonsynonymous SNV 0.001 0 14 hm5C_associated_SNPs_17152 0 0 1 0 1 Nucleus 1 0.500231643899762 1 0.999536712200475 hm5C_site_18616 DeepMRMD:1;iRNA_m5C:0.999536712200475 18617 chr18 13056643 13056643 1 + G A BLCA 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTCTATTGGTACAAACTGTGGAATTGAACCATGGGA < 41bp 1 0.281822346704594 1 0.185627490282059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056643 nonsynonymous SNV 0.001 0 10 hm5C_associated_SNPs_17153 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18617 DeepMRMD:1;iRNA_m5C:0.999536712157815 18618 chr10 75520579 75520579 1 + G A BLCA 75520570 + 75520550 75520590 41 TGGGCCTCCTCAGCCACTGCCTCCTAAGCGCCTGGACCCTG TGGGCCTCCTCAGCCACTGCCTCCTAAGCACCTGGACCCTG < 41bp 1 0.41364640303546 1 0.497589766979218 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520570 chr10:75520579 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_17154 0 0 1 0 1 Nucleus 1 0.500231643921091 1 0.999536712157817 hm5C_site_18618 DeepMRMD:1;iRNA_m5C:0.999536712157817 18619 chr1 231114988 231114988 1 + G A BLCA 231114974 + 231114954 231114994 41 ATCGAATGCAACCAGGAGGCCAAAGAGTTGTACCGAGACTA ATCGAATGCAACCAGGAGGCCAAAGAGTTGTACCAAGACTA < 41bp 1 0.614630365935926 1 0.301104247570038 experiment 0.770739268128148 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARV1 ENSG00000173409 CDS Human protein_coding chr1:231114974 chr1:231114988 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_17155 0 0 1 0 1 Endoplasmic reticulum 1 0.500231639865536 1 0.999536720268928 hm5C_site_18619 DeepMRMD:1;iRNA_m5C:0.999536720268928 18620 chr5 54720564 54720564 1 + G C BLCA 54720581 + 54720561 54720601 41 CAAGAGAGATATTGTGTTTGCTGCCAGCCTCTACTTGTAGA CAACAGAGATATTGTGTTTGCTGCCAGCCTCTACTTGTAGA < 41bp 1 0.292646545023918 1 0.0951498448848724 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54720581 chr5:54720564 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_17156 0 0 1 0 1 Nucleus 1 0.500231643920409 1 0.999536712159181 hm5C_site_18620 DeepMRMD:1;iRNA_m5C:0.999536712159181 18621 chr7 129950684 129950684 1 + C T BLCA 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCCGAAGTGTACCATGGACCCCACGCCAATTTGGAAGTG < 41bp 1 0.576523245081972 1 0.0500959157943726 experiment 0.846953509836057 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950684 nonsynonymous SNV 0.957 4 34 hm5C_associated_SNPs_17157 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921096 1 0.999536712157808 hm5C_site_18621 DeepMRMD:1;iRNA_m5C:0.999536712157808 18622 chr7 129950684 129950684 1 + C T BLCA 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCGAAGTGTACCATGGACCCCACGCCAATTTGGAAGTGG < 41bp 1 0.0980162719508187 1 0.038137823343277 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950684 nonsynonymous SNV 0.957 4 33 hm5C_associated_SNPs_17158 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643928203 1 0.999536712143594 hm5C_site_18622 DeepMRMD:1;iRNA_m5C:0.999536712143594 18623 chr19 56153912 56153912 1 + C T BLCA 56153916 + 56153896 56153936 41 CCACCCCACCCTCGGTCCTCCTCTCCGGAGGCCATGGACCC CCACCCCACCCTCGGTTCTCCTCTCCGGAGGCCATGGACCC < 41bp 1 0.141144600685596 1 0.221682697534561 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF580 ENSG00000213015 CDS Human protein_coding chr19:56153916 chr19:56153912 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_17159 0 0 1 0 1 nucleus 1 0.500231617076114 1 0.999536765847771 hm5C_site_18623 DeepMRMD:1;iRNA_m5C:0.999536765847771 18624 chr17 62223773 62223773 1 + C T BLCA 62223763 + 62223743 62223783 41 GTCAATCTGCAGCGCTAGAGCATGTGCTTGCGCATAACTGG GTCAATCTGCAGCGCTAGAGCATGTGCTTGTGCATAACTGG < 41bp 1 0.527244734332955 1 0.580662429332733 experiment 0.945510531334091 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223763 chr17:62223773 . . 0 31 hm5C_associated_SNPs_17160 0 0 1 0 0 unknown 1 0.500231584656107 0.838675141334534 0.999536830687786 hm5C_site_18624 DeepMRMD:0.838675141334534;iRNA_m5C:0.999536830687786 18625 chr17 62223773 62223773 1 + C T BLCA 62223769 + 62223749 62223789 41 CTGCAGCGCTAGAGCATGTGCTTGCGCATAACTGGGGCCGC CTGCAGCGCTAGAGCATGTGCTTGTGCATAACTGGGGCCGC < 41bp 1 0.407002498828872 1 0.0930295884609222 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223769 chr17:62223773 . . 0 25 hm5C_associated_SNPs_17161 0 0 1 0 0 unknown 1 0.500231644286304 1 0.999536711427392 hm5C_site_18625 DeepMRMD:1;iRNA_m5C:0.999536711427392 18626 chr17 62223773 62223773 1 + C T BLCA 62223787 + 62223767 62223807 41 TGCTTGCGCATAACTGGGGCCGCCTGGCCTCCCGCGGGCGG TGCTTGTGCATAACTGGGGCCGCCTGGCCTCCCGCGGGCGG < 41bp 1 0.254388075771403 1 0.0488356947898865 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223787 chr17:62223773 . . 0 7 hm5C_associated_SNPs_17162 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_18626 DeepMRMD:1;iRNA_m5C:0.999536712157815 18627 chr1 164789372 164789372 1 + A G BLCA 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAG < 41bp 1 0.607450585932579 1 0.130582302808762 experiment 0.785098828134843 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789372 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_17163 0 0 0 0 2 Ribosome 1 0.500231651848128 1 0.999536696303744 hm5C_site_18627 DeepMRMD:1;iRNA_m5C:0.999536696303744 18628 chr9 140110130 140110130 1 + C T BLCA 140110114 + 140110094 140110134 41 CCTCCTTCCTGCAATAGGACCTGTCCGGGTGCCCCTCTGGG CCTCCTTCCTGCAATAGGACCTGTCCGGGTGCCCCTTTGGG < 41bp 1 0.0378160558632996 1 0.0841293036937714 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110114 chr9:140110130 synonymous SNV . 0 37 hm5C_associated_SNPs_17164 0 0 1 0 1 chromatin 1 0.500231643874457 1 0.999536712251086 hm5C_site_18628 DeepMRMD:1;iRNA_m5C:0.999536712251086 18629 chr11 65829391 65829391 1 + G A BLCA 65829381 + 65829361 65829401 41 GAATGCCCACAAGGTCCCTCCCCCATGGCTGATTGCCATGC GAATGCCCACAAGGTCCCTCCCCCATGGCTAATTGCCATGC < 41bp 1 0.540649704002374 1 0.217325687408447 experiment 0.918700591995253 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65829381 chr11:65829391 synonymous SNV . 0 31 hm5C_associated_SNPs_17165 0 0 1 0 2 Nucleus 1 0.500231643967181 1 0.999536712065639 hm5C_site_18629 DeepMRMD:1;iRNA_m5C:0.999536712065639 18630 chr19 8551106 8551106 1 + G T BLCA 8551091 + 8551071 8551111 41 AACAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCGGCCCT AACAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCTGCCCT < 41bp 1 0.335708542216607 1 0.0450824201107025 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551091 chr19:8551106 synonymous SNV . 0 36 hm5C_associated_SNPs_17166 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18630 DeepMRMD:1;iRNA_m5C:0.999536712157815 18631 chr19 8551106 8551106 1 + G T BLCA 8551092 + 8551072 8551112 41 ACAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCGGCCCTG ACAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCTGCCCTG < 41bp 1 0.233408074526146 1 0.0685535371303558 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551092 chr19:8551106 synonymous SNV . 0 35 hm5C_associated_SNPs_17167 0 0 1 0 0 Nucleus 1 0.500231643924808 1 0.999536712150384 hm5C_site_18631 DeepMRMD:1;iRNA_m5C:0.999536712150384 18632 chr19 8551106 8551106 1 + G T BLCA 8551093 + 8551073 8551113 41 CAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCGGCCCTGG CAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCTGCCCTGG < 41bp 1 0.688710463102004 1 0.0576936900615692 experiment 0.622579073795992 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551093 chr19:8551106 synonymous SNV . 0 34 hm5C_associated_SNPs_17168 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18632 DeepMRMD:1;iRNA_m5C:0.999536712157815 18633 chr19 8551106 8551106 1 + G T BLCA 8551103 + 8551083 8551123 41 CGCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGGCAT CGCATGGGCCCTGCCATGGGCCCTGCCCTGGGCGCTGGCAT < 41bp 1 0.24232862009555 1 0.0437374114990234 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551103 chr19:8551106 synonymous SNV . 0 24 hm5C_associated_SNPs_17169 0 0 1 0 0 Nucleus 1 0.500231622355645 1 0.99953675528871 hm5C_site_18633 DeepMRMD:1;iRNA_m5C:0.99953675528871 18634 chr19 8551106 8551106 1 + G T BLCA 8551104 + 8551084 8551124 41 GCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGGCATT GCATGGGCCCTGCCATGGGCCCTGCCCTGGGCGCTGGCATT < 41bp 1 0.206062009161108 1 0.0585673451423645 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551104 chr19:8551106 synonymous SNV . 0 23 hm5C_associated_SNPs_17170 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18634 DeepMRMD:1;iRNA_m5C:0.999536712157815 18635 chr5 76355520 76355520 1 + G A BLCA 76355513 + 76355493 76355533 41 GAGCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACT GAGCTGGAAAACGTAGGGAGCAGGTTGAAAGTGAAGGAACT < 41bp 1 0.394628583818831 1 0.382625490427017 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76355513 chr5:76355520 nonsynonymous SNV 0.998 4 28 hm5C_associated_SNPs_17172 0 0 1 0 2 Ribosome 1 0.500231643926633 1 0.999536712146735 hm5C_site_18635 DeepMRMD:1;iRNA_m5C:0.999536712146735 18636 chr7 128119304 128119304 1 + G A BLCA 128119323 + 128119303 128119343 41 CGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT CAAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT < 41bp 1 0.111074730678795 1 0.149672299623489 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METTL2B ENSG00000165055 CDS Human protein_coding chr7:128119323 chr7:128119304 nonsynonymous SNV 0.984 4 2 hm5C_associated_SNPs_17173 0 0 1 0 1 Ribosome 1 0.500220989692102 1 0.999558020615796 hm5C_site_18636 DeepMRMD:1;iRNA_m5C:0.999558020615796 18637 chr11 33078731 33078731 1 + G T BLCA 33078749 + 33078729 33078769 41 AAGATCCCCCAGCATATGACCATGCTATCAAACTTGTAGGA AATATCCCCCAGCATATGACCATGCTATCAAACTTGTAGGA < 41bp 1 0.341293190401418 1 0.250220715999603 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33078749 chr11:33078731 nonsynonymous SNV 0.981 2 3 hm5C_associated_SNPs_17174 0 0 1 0 2 Ribosome 1 0.500231643921089 1 0.999536712157821 hm5C_site_18637 DeepMRMD:1;iRNA_m5C:0.999536712157821 18638 chr11 65267925 65267925 1 + C A BLCA 65267931 + 65267911 65267951 41 AGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGG AGCAGACAGGATTCAAGGAACCAGTGTTTGATGAAGCTAGG < 41bp 1 0.375815234955721 1 0.193825840950012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267931 chr11:65267925 . . 0 15 hm5C_associated_SNPs_17175 0 0 1 2 0 unknown 1 0.500231638084506 1 0.999536723830988 hm5C_site_18638 DeepMRMD:1;iRNA_m5C:0.999536723830988 18639 chr11 65267925 65267925 1 + C A BLCA 65267932 + 65267912 65267952 41 GCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGA GCAGACAGGATTCAAGGAACCAGTGTTTGATGAAGCTAGGA < 41bp 1 0.665310183181645 1 0.215543538331985 experiment 0.66937963363671 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267932 chr11:65267925 . . 0 14 hm5C_associated_SNPs_17176 0 0 1 2 0 unknown 1 0.500231651162955 1 0.99953669767409 hm5C_site_18639 DeepMRMD:1;iRNA_m5C:0.99953669767409 18640 chr11 65271701 65271701 1 + G A BLCA 65271692 + 65271672 65271712 41 GTTCTAGTGAGTGTATGAGACCTTGCAGTGAGTTTATCAGC GTTCTAGTGAGTGTATGAGACCTTGCAGTAAGTTTATCAGC < 41bp 1 0.120506727162586 1 0.0959185659885406 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271692 chr11:65271701 . . 0 30 hm5C_associated_SNPs_17177 0 0 1 0 0 unknown 1 0.500499310875362 1 0.999001378249276 hm5C_site_18640 DeepMRMD:1;iRNA_m5C:0.999001378249276 18641 chr22 35726432 35726432 1 + C T BLCA 35726424 + 35726404 35726444 41 ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGACAAT ATGAGCAGCTGACAGAGGAGCTGCTCATTGTCAATGACAAT < 41bp 1 0.129953596844531 1 0.0741252303123474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726424 chr22:35726432 synonymous SNV . 0 29 hm5C_associated_SNPs_17179 0 0 1 1 2 Cytosol 1 0.500231648843413 1 0.999536702313175 hm5C_site_18641 DeepMRMD:1;iRNA_m5C:0.999536702313175 18642 chr19 12902839 12902839 1 + C T BLCA 12902850 + 12902830 12902870 41 TCGCCTCTTCGGAGCTGGAACGCCTGATTGTCCCCAACAGC TCGCCTCTTTGGAGCTGGAACGCCTGATTGTCCCCAACAGC < 41bp 1 0.428828376782737 1 0.128598272800446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control JUNB ENSG00000171223 CDS Human protein_coding chr19:12902850 chr19:12902839 nonsynonymous SNV 0.330 1 10 hm5C_associated_SNPs_17180 0 0 0 0 0 Cytosol 1 0.500231643921084 1 0.999536712157832 hm5C_site_18642 DeepMRMD:1;iRNA_m5C:0.999536712157832 18643 chr11 65270535 65270535 1 + G C BLCA 65270555 + 65270535 65270575 41 GATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTT CATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTT < 41bp 1 0.470680189196861 1 0.159710884094238 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270555 chr11:65270535 . . 0 1 hm5C_associated_SNPs_17181 0 0 1 0 0 unknown 1 0.500231644925439 1 0.999536710149121 hm5C_site_18643 DeepMRMD:1;iRNA_m5C:0.999536710149121 18644 chr4 160264498 160264498 1 + C T BLCA 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTAAGGATGATTGCAAAAGAAATTTGTCACGTTG < 41bp 1 0.652867186054068 1 0.658014178276062 experiment 0.694265627891863 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264498 nonsynonymous SNV 0.988 4 32 hm5C_associated_SNPs_17184 0 0 1 0 2 Cytosol 1 0.500231736895703 0.683971643447876 0.999536526208594 hm5C_site_18644 DeepMRMD:0.683971643447876;iRNA_m5C:0.999536526208594 18645 chr6 170866126 170866126 1 + G A BLCA 170866140 + 170866120 170866160 41 GGATCAGAACAACAGCCTGCCACCTTACGCTCAGGGCTTGG GGATCAAAACAACAGCCTGCCACCTTACGCTCAGGGCTTGG < 41bp 1 0.400301053105127 1 0.0565184056758881 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBP ENSG00000112592 CDS Human protein_coding chr6:170866140 chr6:170866126 synonymous SNV . 0 7 hm5C_associated_SNPs_17185 0 0 1 0 1 Cytosol 1 0.500231647539757 1 0.999536704920485 hm5C_site_18645 DeepMRMD:1;iRNA_m5C:0.999536704920485 18646 chr15 52356167 52356167 1 + A T BLCA 52356166 + 52356146 52356186 41 ACTTTGATATTGATGAAGTTCAGCTTGATCCAAGAGCTCTG ACTTTGATATTGATGAAGTTCTGCTTGATCCAAGAGCTCTG < 41bp 1 0.635793579190057 1 0.264804422855377 experiment 0.728412841619886 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356166 chr15:52356167 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_17186 0 0 1 0 1 Ribosome 1 0.500231643937681 1 0.999536712124637 hm5C_site_18646 DeepMRMD:1;iRNA_m5C:0.999536712124637 18647 chr19 45975962 45975962 1 + G A BLCA 45975942 + 45975922 45975962 41 GATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGG GATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGA < 41bp 1 0.634068414444177 1 0.51979672908783 experiment 0.731863171111647 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975942 chr19:45975962 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_17190 0 0 0 0 1 Cytosol 1 0.500231643921093 0.96040654182434 0.999536712157813 hm5C_site_18647 DeepMRMD:0.96040654182434;iRNA_m5C:0.999536712157813 18648 chr19 45975962 45975962 1 + G A BLCA 45975952 + 45975932 45975972 41 GAAGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGA GAAGAGGGGCCCGGGCCGGGCCCGCTGGCGAAGGTGAGAGA < 41bp 1 0.439053630974059 1 0.220198959112167 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975952 chr19:45975962 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_17192 0 0 0 0 1 Cytosol 1 0.50023225322278 1 0.99953549355444 hm5C_site_18648 DeepMRMD:1;iRNA_m5C:0.99953549355444 18649 chr19 45975962 45975962 1 + G A BLCA 45975953 + 45975933 45975973 41 AAGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGAT AAGAGGGGCCCGGGCCGGGCCCGCTGGCGAAGGTGAGAGAT < 41bp 1 0.442889209051723 1 0.486218899488449 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975953 chr19:45975962 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_17193 0 0 0 0 1 Cytosol 1 0.500231643921133 1 0.999536712157735 hm5C_site_18649 DeepMRMD:1;iRNA_m5C:0.999536712157735 18650 chr19 45975962 45975962 1 + G A BLCA 45975954 + 45975934 45975974 41 AGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGATT AGAGGGGCCCGGGCCGGGCCCGCTGGCGAAGGTGAGAGATT < 41bp 1 0.562996902130535 1 0.403030574321747 experiment 0.87400619573893 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975954 chr19:45975962 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_17194 0 0 0 0 1 Cytosol 1 0.500231644779798 1 0.999536710440404 hm5C_site_18650 DeepMRMD:1;iRNA_m5C:0.999536710440404 18651 chr8 95885644 95885644 1 + C T BLCA 95885659 + 95885639 95885679 41 CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG CCAGGTAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG < 41bp 1 0.629179219397612 1 0.203479409217834 experiment 0.741641561204775 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95885659 chr8:95885644 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_17195 0 0 1 0 2 Nucleus 1 0.500708262331832 1 0.998583475336336 hm5C_site_18651 DeepMRMD:1;iRNA_m5C:0.998583475336336 18652 chr7 94057029 94057029 1 + G C BLCA 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC CGATGGAGACTTCTACAGGGCTCACCAGCCTCGCTCAGCAC < 41bp 1 0.102055235770642 1 0.0219503045082092 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057029 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_17196 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644021938 1 0.999536711956124 hm5C_site_18652 DeepMRMD:1;iRNA_m5C:0.999536711956124 18653 chr7 94057029 94057029 1 + G C BLCA 94057032 + 94057012 94057052 41 GAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCT GAGACTTCTACAGGGCTCACCAGCCTCGCTCAGCACCTTCT < 41bp 1 0.120190115734067 1 0.268230378627777 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057032 chr7:94057029 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_17197 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_18653 DeepMRMD:1;iRNA_m5C:0.999536712157815 18654 chr17 49239126 49239126 1 + G C BLCA 49239112 + 49239092 49239132 41 CATTATACATGGCAGTGATTCTGTGGAGAGTGCAGAGAAGG CATTATACATGGCAGTGATTCTGTGGAGAGTGCACAGAAGG < 41bp 1 0.459416048162985 1 0.72057843208313 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239112 chr17:49239126 nonsynonymous SNV 0.996 0 35 hm5C_associated_SNPs_17198 0 0 1 0 1 Ribosome 1 0.500231643891301 0.55884313583374 0.999536712217399 hm5C_site_18654 DeepMRMD:0.55884313583374;iRNA_m5C:0.999536712217399 18655 chr17 49239126 49239126 1 + G C BLCA 49239124 + 49239104 49239144 41 CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGCTTGT CAGTGATTCTGTGGAGAGTGCACAGAAGGAGATCGGCTTGT < 41bp 1 0.392854879053242 1 0.104297041893005 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239124 chr17:49239126 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_17199 0 0 1 0 1 Ribosome 1 0.500231639441177 1 0.999536721117645 hm5C_site_18655 DeepMRMD:1;iRNA_m5C:0.999536721117645 18656 chr3 188242483 188242483 1 + A G BLCA 188242472 + 188242452 188242492 41 GGGGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCA GGGGAATCCCGGAGGCAAGACACTTGAGGAGGGGCGCTCCA < 41bp 1 0.187611857974937 1 0.0565183460712433 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPP ENSG00000145012 CDS Human protein_coding chr3:188242472 chr3:188242483 nonsynonymous SNV 0.861 4 32 hm5C_associated_SNPs_17200 0 0 1 0 2 Cytosol 1 0.500231646012918 1 0.999536707974164 hm5C_site_18656 DeepMRMD:1;iRNA_m5C:0.999536707974164 18657 chr15 45003774 45003774 1 + C G BLCA 45003787 + 45003767 45003807 41 CTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATC CTGTGCTGGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATC < 41bp 1 0.163375340441643 1 0.069319486618042 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B2M ENSG00000166710 CDS Human protein_coding chr15:45003787 chr15:45003774 synonymous SNV . 0 8 hm5C_associated_SNPs_17201 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18657 DeepMRMD:1;iRNA_m5C:0.999536712157815 18658 chr14 77706871 77706871 1 + C T BLCA 77706886 + 77706866 77706906 41 GAGTTCAACGCCGAGCTCAACCGCGTGCCGCTCAAGCGGCT GAGTTTAACGCCGAGCTCAACCGCGTGCCGCTCAAGCGGCT < 41bp 1 0.265162641162924 1 0.223473697900772 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77706886 chr14:77706871 synonymous SNV . 0 6 hm5C_associated_SNPs_17202 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18658 DeepMRMD:1;iRNA_m5C:0.999536712157815 18659 chr17 66526542 66526542 1 + C G BLCA 66526558 + 66526538 66526578 41 TCCTCAAACGAAACATCCAGCAGTACAACAGTTTTGTGTCA TCCTGAAACGAAACATCCAGCAGTACAACAGTTTTGTGTCA < 41bp 1 0.542854613203916 1 0.909718930721283 experiment 0.914290773592167 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66526558 chr17:66526542 synonymous SNV . 0 5 hm5C_associated_SNPs_17203 0 0 1 0 0 Ribosome 1 0.500231642516515 0.180562138557434 0.999536714966969 hm5C_site_18659 DeepMRMD:0.180562138557434;iRNA_m5C:0.999536714966969 18660 chr16 77775671 77775671 1 + G C BLCA 77775688 + 77775668 77775708 41 CCTGAAGACGGTGTCACTTACCAGATCAAGGGAATGACGGC CCTCAAGACGGTGTCACTTACCAGATCAAGGGAATGACGGC < 41bp 1 0.689690913012689 1 0.552094578742981 experiment 0.620618173974623 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77775688 chr16:77775671 nonsynonymous SNV 0.112 0 4 hm5C_associated_SNPs_17204 0 0 1 0 0 nucleoplasm 1 0.500231643921025 0.895810842514038 0.999536712157949 hm5C_site_18660 DeepMRMD:0.895810842514038;iRNA_m5C:0.999536712157949 18661 chr16 77775671 77775671 1 + G C BLCA 77775689 + 77775669 77775709 41 CTGAAGACGGTGTCACTTACCAGATCAAGGGAATGACGGCA CTCAAGACGGTGTCACTTACCAGATCAAGGGAATGACGGCA < 41bp 1 0.526843445070622 1 0.682348489761353 experiment 0.946313109858755 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77775689 chr16:77775671 nonsynonymous SNV 0.112 0 3 hm5C_associated_SNPs_17205 0 0 1 0 0 nucleoplasm 1 0.500231586455074 0.635303020477294 0.999536827089853 hm5C_site_18661 DeepMRMD:0.635303020477294;iRNA_m5C:0.999536827089853 18662 chr2 32828145 32828145 1 + T A BLCA 32828127 + 32828107 32828147 41 GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTG GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTATG < 41bp 1 0.0971866773275454 1 0.0665454864501953 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32828127 chr2:32828145 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_17206 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18662 DeepMRMD:1;iRNA_m5C:0.999536712157815 18663 chr20 35866820 35866820 1 + G A BLCA 35866808 + 35866788 35866828 41 CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAGAGCAGTAG CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAAAGCAGTAG < 41bp 1 0.300886852854368 1 0.251753449440002 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35866808 chr20:35866820 synonymous SNV . 0 33 hm5C_associated_SNPs_17207 0 0 1 0 2 Ribosome 1 0.500261487964593 1 0.999477024070814 hm5C_site_18663 DeepMRMD:1;iRNA_m5C:0.999477024070814 18664 chr19 4954700 4954700 1 + C T BLCA 4954693 + 4954673 4954713 41 AGCAGGGCGGGTCCCCGCGCCGGACATCCAAGAAAACCAAG AGCAGGGCGGGTCCCCGCGCCGGACATTCAAGAAAACCAAG < 41bp 1 0.26413727672622 1 0.482388198375702 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954693 chr19:4954700 . 0.051 0 28 hm5C_associated_SNPs_17208 0 0 0 0 2 chromatin 1 0.500231643921097 1 0.999536712157806 hm5C_site_18664 DeepMRMD:1;iRNA_m5C:0.999536712157806 18665 chr19 48179158 48179158 1 + C G BLCA 48179146 + 48179126 48179166 41 CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAGG CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTGTATGAAGG < 41bp 1 0.145958826462974 1 0.701330006122589 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICRA ENSG00000063169 CDS Human protein_coding chr19:48179146 chr19:48179158 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_17209 0 0 1 0 2 unknown 1 0.500231643951278 0.597339987754822 0.999536712097445 hm5C_site_18665 DeepMRMD:0.597339987754822;iRNA_m5C:0.999536712097445 18666 chr2 37475346 37475346 1 + G A BLCA 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATAAATCCAAAGAAGATGGGAGAGAGA < 41bp 1 0.430713116369607 1 0.490877419710159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475346 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_17210 0 0 1 2 1 chromatin 1 0.500231651737729 1 0.999536696524541 hm5C_site_18666 DeepMRMD:1;iRNA_m5C:0.999536696524541 18667 chr2 37475346 37475346 1 + G A BLCA 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATAAATCCAAAGAAGATGGGAGAGAGAT < 41bp 1 0.407134950951458 1 0.322917401790619 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475346 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_17211 0 0 1 2 1 chromatin 1 0.500231643882736 1 0.999536712234528 hm5C_site_18667 DeepMRMD:1;iRNA_m5C:0.999536712234528 18668 chr2 37475355 37475355 1 + G T BLCA 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAAATAAGATGGGAGAGAGA < 41bp 1 0.359299314634437 1 0.498546242713928 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475355 nonsynonymous SNV 0.999 0 26 hm5C_associated_SNPs_17212 0 0 1 3 1 chromatin 1 0.500231643919005 1 0.99953671216199 hm5C_site_18668 DeepMRMD:1;iRNA_m5C:0.99953671216199 18669 chr2 37475355 37475355 1 + G T BLCA 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAAATAAGATGGGAGAGAGAT < 41bp 1 0.249097379857346 1 0.228430807590485 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475355 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_17213 0 0 1 3 1 chromatin 1 0.500231643799238 1 0.999536712401525 hm5C_site_18669 DeepMRMD:1;iRNA_m5C:0.999536712401525 18670 chr6 44274746 44274746 1 + G A BRCA 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC TGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC < 41bp 1 0.514239745845444 1 0.859180927276611 experiment 0.971520508309112 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274746 nonsynonymous SNV 0.995 5 1 hm5C_associated_SNPs_17214 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 0.281638145446778 0.999536712157815 hm5C_site_18670 DeepMRMD:0.281638145446778;iRNA_m5C:0.999536712157815 18671 chr1 94953135 94953135 1 + C T BRCA 94953142 + 94953122 94953162 41 TTGTTTCGGTTTTCAATGGGCTTCATTGATAGTATTATTGC TTGTTTCGGTTTTTAATGGGCTTCATTGATAGTATTATTGC < 41bp 1 0.350772386765224 1 0.103641092777252 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94953142 chr1:94953135 nonsynonymous SNV 0.996 2 14 hm5C_associated_SNPs_17216 0 0 1 0 2 Nucleus 1 0.500231643917992 1 0.999536712164015 hm5C_site_18671 DeepMRMD:1;iRNA_m5C:0.999536712164015 18672 chr15 89659692 89659692 1 + A G BRCA 89659711 + 89659691 89659731 41 TACTTCCAGGACTCGGGGCTCTCACGCTTTCTGCTCAAGTC TGCTTCCAGGACTCGGGGCTCTCACGCTTTCTGCTCAAGTC < 41bp 1 0.33240739335777 1 0.116804271936417 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89659711 chr15:89659692 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_17217 0 0 1 1 0 Nucleus 1 0.500231643921846 1 0.999536712156307 hm5C_site_18672 DeepMRMD:1;iRNA_m5C:0.999536712156307 18673 chr3 128631355 128631355 1 + C G BRCA 128631356 + 128631336 128631376 41 CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATGAGCAGA CTTTTCCTTCCCAGATGCTGCAGAAAACCTAGATGAGCAGA < 41bp 1 0.521262853169532 1 0.642116248607635 experiment 0.957474293660937 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128631356 chr3:128631355 nonsynonymous SNV 0.995 1 20 hm5C_associated_SNPs_17218 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 0.71576750278473 0.999536712157814 hm5C_site_18673 DeepMRMD:0.71576750278473;iRNA_m5C:0.999536712157814 18674 chr11 76572075 76572075 1 + G T BRCA 76572057 + 76572037 76572077 41 ACCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGAC ACCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGTAC < 41bp 1 0.286293829251539 1 0.112675964832306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572057 chr11:76572075 nonsynonymous SNV 0.994 3 39 hm5C_associated_SNPs_17219 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643922906 1 0.999536712154189 hm5C_site_18674 DeepMRMD:1;iRNA_m5C:0.999536712154189 18675 chr11 76572075 76572075 1 + G T BRCA 76572058 + 76572038 76572078 41 CCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGGACT CCGAGAGGGCTACTGGGGCCCCACGACCTCCACGCTGTACT < 41bp 1 0.362741794122704 1 0.101051956415176 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACER3 ENSG00000078124 CDS Human protein_coding chr11:76572058 chr11:76572075 nonsynonymous SNV 0.994 3 38 hm5C_associated_SNPs_17220 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644031117 1 0.999536711937765 hm5C_site_18675 DeepMRMD:1;iRNA_m5C:0.999536711937765 18676 chr22 41923399 41923399 1 + C T BRCA 41923388 + 41923368 41923408 41 AGCCTCGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGC AGCCTCGCCACCTTGGGGGCCGGGCCATCATTACCAAGAGC < 41bp 1 0.284729336832137 1 0.64673638343811 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41923388 chr22:41923399 synonymous SNV . 0 32 hm5C_associated_SNPs_17221 0 0 1 0 1 chromatin 1 0.500231643921092 0.70652723312378 0.999536712157815 hm5C_site_18676 DeepMRMD:0.70652723312378;iRNA_m5C:0.999536712157815 18677 chr22 41865164 41865164 1 + G T BRCA 41865147 + 41865127 41865167 41 ACCTCATCTTTGTCAGTGCACAAAATGGCGCCCTACAGCCT ACCTCATCTTTGTCAGTGCACAAAATGGCGCCCTACATCCT < 41bp 1 0.603207568369081 1 0.495965510606766 experiment 0.793584863261838 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41865147 chr22:41865164 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_17222 0 0 1 0 1 chromatin 1 0.50021813686342 1 0.99956372627316 hm5C_site_18677 DeepMRMD:1;iRNA_m5C:0.99956372627316 18678 chr17 48541257 48541257 1 + G A BRCA 48541260 + 48541240 48541280 41 TCCAGTTATGACATCTCGACCATGTGTGGAGGTGGGGTGGG TCCAGTTATGACATCTCAACCATGTGTGGAGGTGGGGTGGG < 41bp 1 0.5483968128783 1 0.419202566146851 experiment 0.9032063742434 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48541260 chr17:48541257 synonymous SNV . 0 18 hm5C_associated_SNPs_17223 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643825233 1 0.999536712349534 hm5C_site_18678 DeepMRMD:1;iRNA_m5C:0.999536712349534 18679 chr12 52379131 52379131 1 + C T BRCA 52379127 + 52379107 52379147 41 CCGAATCAGAGGGTGGGGACCAAACGGTAGGAGGGCCTGGG CCGAATCAGAGGGTGGGGACCAAATGGTAGGAGGGCCTGGG < 41bp 1 0.363200378339557 1 0.735336661338806 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52379127 chr12:52379131 stopgain 0.999 1 25 hm5C_associated_SNPs_17224 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 0.529326677322388 0.999536712157815 hm5C_site_18679 DeepMRMD:0.529326677322388;iRNA_m5C:0.999536712157815 18680 chr9 18887969 18887969 1 + C G BRCA 18887949 + 18887929 18887969 41 TGGACAGATCCTTCAAGTTGCAAACCTTAGCGGTGGGTCTC TGGACAGATCCTTCAAGTTGCAAACCTTAGCGGTGGGTCTG < 41bp 1 0.0704800656613596 1 0.0866265892982483 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18887949 chr9:18887969 nonsynonymous SNV 0.998 0 41 hm5C_associated_SNPs_17225 0 0 0 0 1 Nucleus 1 0.500231821549324 1 0.999536356901352 hm5C_site_18680 DeepMRMD:1;iRNA_m5C:0.999536356901352 18681 chr9 95599746 95599746 1 + C T BRCA 95599736 + 95599716 95599756 41 CGCTGTGGTCTCCGCTGGGGCCGCTGGAGGCCCCGGGGCCT CGCTGTGGTCTCCGCTGGGGCCGCTGGAGGTCCCGGGGCCT < 41bp 1 0.395466634274131 1 0.345942676067352 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599736 chr9:95599746 . . 0 31 hm5C_associated_SNPs_17227 0 0 0 0 0 unknown 1 0.500226615562263 1 0.999546768875475 hm5C_site_18681 DeepMRMD:1;iRNA_m5C:0.999546768875475 18682 chr19 36370329 36370329 1 + G C BRCA 36370340 + 36370320 36370360 41 CGCTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC CGCTTCCTGCAGGAACGACCCTGACCCGGCCCCCTTCACCC < 41bp 1 0.418072880295048 1 0.113428562879562 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370340 chr19:36370329 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_17230 0 0 1 0 1 Endoplasmic reticulum 1 0.500231639395012 1 0.999536721209976 hm5C_site_18682 DeepMRMD:1;iRNA_m5C:0.999536721209976 18683 chr22 36054859 36054859 1 + C G BRCA 36054872 + 36054852 36054892 41 GCCACCTCTACTGCTGTCATCTCTGGAGTGATGAGCCTCCT GCCACCTGTACTGCTGTCATCTCTGGAGTGATGAGCCTCCT < 41bp 1 0.571646677472116 1 0.765496134757996 experiment 0.856706645055768 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APOL6 ENSG00000221963 CDS Human protein_coding chr22:36054872 chr22:36054859 nonsynonymous SNV 0.005 2 8 hm5C_associated_SNPs_17231 0 0 0 1 0 Nucleus 1 0.500231636382901 0.469007730484008 0.999536727234199 hm5C_site_18683 DeepMRMD:0.469007730484008;iRNA_m5C:0.999536727234199 18684 chr7 144062632 144062632 1 + C G BRCA 144062647 + 144062627 144062667 41 GGTCTCAGAACACCCTGAGGCCCCTGCGAGAGAACCTTTGA GGTCTGAGAACACCCTGAGGCCCCTGCGAGAGAACCTTTGA < 41bp 1 0.157107970399732 1 0.185314983129501 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144062647 chr7:144062632 stopgain 0.043 0 6 hm5C_associated_SNPs_17232 0 0 0 0 0 exosome 1 0.500231643907242 1 0.999536712185516 hm5C_site_18684 DeepMRMD:1;iRNA_m5C:0.999536712185516 18685 chr7 144062632 144062632 1 + C G BRCA 144062648 + 144062628 144062668 41 GTCTCAGAACACCCTGAGGCCCCTGCGAGAGAACCTTTGAG GTCTGAGAACACCCTGAGGCCCCTGCGAGAGAACCTTTGAG < 41bp 1 0.0691434768975835 1 0.142718344926834 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144062648 chr7:144062632 stopgain 0.043 0 5 hm5C_associated_SNPs_17233 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18685 DeepMRMD:1;iRNA_m5C:0.999536712157815 18686 chr7 144062632 144062632 1 + C G BRCA 144062649 + 144062629 144062669 41 TCTCAGAACACCCTGAGGCCCCTGCGAGAGAACCTTTGAGA TCTGAGAACACCCTGAGGCCCCTGCGAGAGAACCTTTGAGA < 41bp 1 0.0749320787460089 1 0.196133852005005 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144062649 chr7:144062632 stopgain 0.043 0 4 hm5C_associated_SNPs_17234 0 0 0 0 0 exosome 1 0.500231643924975 1 0.999536712150049 hm5C_site_18686 DeepMRMD:1;iRNA_m5C:0.999536712150049 18687 chr7 144062632 144062632 1 + C G BRCA 144062650 + 144062630 144062670 41 CTCAGAACACCCTGAGGCCCCTGCGAGAGAACCTTTGAGAA CTGAGAACACCCTGAGGCCCCTGCGAGAGAACCTTTGAGAA < 41bp 1 0.504881068856115 1 0.287040561437607 experiment 0.99023786228777 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144062650 chr7:144062632 stopgain 0.043 0 3 hm5C_associated_SNPs_17235 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18687 DeepMRMD:1;iRNA_m5C:0.999536712157815 18688 chr1 27106816 27106816 1 + C T BRCA 27106819 + 27106799 27106839 41 CCACACCCCCCTTCAGCCGCCTGGAGAAGTTGTATAGCACT CCACACCCCCCTTCAGCTGCCTGGAGAAGTTGTATAGCACT < 41bp 1 0.523606473599673 1 0.600266456604004 experiment 0.952787052800654 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27106819 chr1:27106816 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_17236 0 0 1 0 0 Nucleus 1 0.50023180130421 0.799467086791992 0.999536397391581 hm5C_site_18688 DeepMRMD:0.799467086791992;iRNA_m5C:0.999536397391581 18689 chr15 72855839 72855839 1 + T C BRCA 72855834 + 72855814 72855854 41 TTCGCTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT TTCGCTGCAAATGTGGGCGCCAATTCTGGTAAGCAAGTGAT < 41bp 1 0.0484142437328649 1 0.191669940948486 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72855834 chr15:72855839 synonymous SNV . 0 26 hm5C_associated_SNPs_17237 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18689 DeepMRMD:1;iRNA_m5C:0.999536712157815 18690 chr17 4621248 4621248 1 + C T BRCA 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTTAGCCG < 41bp 1 0.513363840714458 1 0.483279198408127 experiment 0.973272318571084 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621248 nonsynonymous SNV 0.997 0 36 hm5C_associated_SNPs_17238 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18690 DeepMRMD:1;iRNA_m5C:0.999536712157815 18691 chr1 1460657 1460657 1 + C T BRCA 1460670 + 1460650 1460690 41 CTTCCTTCGGAAGCGAGCCACCGTGAGTGTCACTAAGCCTC CTTCCTTTGGAAGCGAGCCACCGTGAGTGTCACTAAGCCTC < 41bp 1 0.181809620126792 1 0.163429528474808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1460670 chr1:1460657 nonsynonymous SNV 0.014 4 8 hm5C_associated_SNPs_17239 0 0 1 0 2 Ribosome 1 0.500231643920849 1 0.999536712158302 hm5C_site_18691 DeepMRMD:1;iRNA_m5C:0.999536712158302 18692 chr1 154303935 154303935 1 + G A BRCA 154303952 + 154303932 154303972 41 AGCGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT AGCAATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT < 41bp 1 0.157618685464493 1 0.072866827249527 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154303952 chr1:154303935 nonsynonymous SNV 0.999 5 4 hm5C_associated_SNPs_17241 0 0 1 0 2 chromatin 1 0.500231643748504 1 0.999536712502991 hm5C_site_18692 DeepMRMD:1;iRNA_m5C:0.999536712502991 18693 chr16 28845927 28845927 1 + G C BRCA 28845926 + 28845906 28845946 41 CCCGCCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATCC CCCGCCTCTGGTGGCTGCCACCCCCTATTCTTCCTACATCC < 41bp 1 0.185685226029919 1 0.643854737281799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845926 chr16:28845927 synonymous SNV . 0 22 hm5C_associated_SNPs_17242 0 0 1 0 1 Cytosol 1 0.500231643937148 0.712290525436402 0.999536712125704 hm5C_site_18693 DeepMRMD:0.712290525436402;iRNA_m5C:0.999536712125704 18694 chr7 70252221 70252221 1 + G T BRCA 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTCGGCCACAAGTATGGCCCCAGTGTGCAGAACTTTAGCA < 41bp 1 0.131408833168508 1 0.067649632692337 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252221 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_17243 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18694 DeepMRMD:1;iRNA_m5C:0.999536712157815 18695 chr7 32598971 32598971 1 + T G BRCA 32598978 + 32598958 32598998 41 AGAGTCTTCCAATTACTGTACAACCTCAAGCTAATACGGGA AGAGTCTTCCAATGACTGTACAACCTCAAGCTAATACGGGA < 41bp 1 0.174880382177159 1 0.107087075710297 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AVL9 ENSG00000105778 CDS Human protein_coding chr7:32598978 chr7:32598971 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_17244 0 0 1 0 0 Ribosome 1 0.500231643920674 1 0.999536712158653 hm5C_site_18695 DeepMRMD:1;iRNA_m5C:0.999536712158653 18696 chr7 32598959 32598959 1 + G C BRCA 32598978 + 32598958 32598998 41 AGAGTCTTCCAATTACTGTACAACCTCAAGCTAATACGGGA ACAGTCTTCCAATTACTGTACAACCTCAAGCTAATACGGGA < 41bp 1 0.157276466827176 1 0.0860389173030853 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AVL9 ENSG00000105778 CDS Human protein_coding chr7:32598978 chr7:32598959 nonsynonymous SNV 0.836 0 2 hm5C_associated_SNPs_17245 0 0 1 0 0 Ribosome 1 0.500231643920512 1 0.999536712158976 hm5C_site_18696 DeepMRMD:1;iRNA_m5C:0.999536712158976 18697 chrX 152770766 152770766 1 + C T BRCA 152770746 + 152770726 152770766 41 CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCC CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCT < 41bp 1 0.618475576145356 1 0.305181384086609 experiment 0.763048847709288 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BGN ENSG00000182492 CDS Human protein_coding chrX:152770746 chrX:152770766 synonymous SNV . 0 41 hm5C_associated_SNPs_17246 0 0 0 0 2 Cytosol 1 0.500230990059348 1 0.999538019881304 hm5C_site_18697 DeepMRMD:1;iRNA_m5C:0.999538019881304 18698 chr2 32824940 32824940 1 + C T BRCA 32824931 + 32824911 32824951 41 GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCT GAGACAACTGGTGGTCATAGCGTGCGATTTAATCCAAACCT < 41bp 1 0.0965295129498336 1 0.524673283100128 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824931 chr2:32824940 synonymous SNV . 0 30 hm5C_associated_SNPs_17247 0 0 1 0 1 Nucleus 1 0.500231638815498 0.950653433799744 0.999536722369005 hm5C_site_18698 DeepMRMD:0.950653433799744;iRNA_m5C:0.999536722369005 18699 chr8 22037949 22037949 1 + G A BRCA 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTACTCACATGCACTGCGTGTGGCGC < 41bp 1 0.489673971783049 1 0.229418903589249 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037949 nonsynonymous SNV 0.994 2 18 hm5C_associated_SNPs_17248 0 0 0 0 2 Endoplasmic reticulum 1 0.500231586163344 1 0.999536827673313 hm5C_site_18699 DeepMRMD:1;iRNA_m5C:0.999536827673313 18700 chr2 28521317 28521317 1 + C G BRCA 28521298 + 28521278 28521318 41 TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTACA TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTAGA < 41bp 1 0.214987816338656 1 0.193666994571686 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28521298 chr2:28521317 stopgain 0.994 1 40 hm5C_associated_SNPs_17249 0 0 1 1 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18700 DeepMRMD:1;iRNA_m5C:0.999536712157815 18701 chr20 11900400 11900400 1 + C T BRCA 11900386 + 11900366 11900406 41 TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCGATGTT TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGTGATGTT < 41bp 1 0.194631353416733 1 0.128027737140656 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900386 chr20:11900400 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_17250 0 0 1 0 2 Cytosol 1 0.500231643917696 1 0.999536712164607 hm5C_site_18701 DeepMRMD:1;iRNA_m5C:0.999536712164607 18702 chr17 71232434 71232434 1 + A G BRCA 71232418 + 71232398 71232438 41 AGGAGTCCCTACTGATGTTACAGTTACTGAGACTCCAGAAA AGGAGTCCCTACTGATGTTACAGTTACTGAGACTCCGGAAA < 41bp 1 0.304135829017342 1 0.0529953837394714 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71232418 chr17:71232434 synonymous SNV . 0 37 hm5C_associated_SNPs_17252 0 0 1 0 0 chromatin 1 0.500231653912021 1 0.999536692175959 hm5C_site_18702 DeepMRMD:1;iRNA_m5C:0.999536692175959 18703 chr17 71232434 71232434 1 + A G BRCA 71232445 + 71232425 71232465 41 TGAGACTCCAGAAAAGAACACAGAATCCCTCATTTTAAGCC TGAGACTCCGGAAAAGAACACAGAATCCCTCATTTTAAGCC < 41bp 1 0.544106450004658 1 0.14340952038765 experiment 0.911787099990684 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71232445 chr17:71232434 synonymous SNV . 0 10 hm5C_associated_SNPs_17253 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18703 DeepMRMD:1;iRNA_m5C:0.999536712157815 18704 chr19 10200684 10200684 1 + C T BRCA 10200688 + 10200668 10200708 41 TTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCGCGTG TTGCCTGCTCCTCCTGTGACCACGTCTGGTGGCGCCGCGTG < 41bp 1 0.666545934525135 1 0.655128657817841 experiment 0.666908130949731 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200688 chr19:10200684 nonsynonymous SNV 0.995 0 17 hm5C_associated_SNPs_17254 0 0 1 0 1 Ribosome 1 0.500231643910494 0.689742684364318 0.999536712179012 hm5C_site_18704 DeepMRMD:0.689742684364318;iRNA_m5C:0.999536712179012 18705 chr12 7177194 7177194 1 + C T BRCA 7177213 + 7177193 7177233 41 ACAGAGGATAATTGGAGGATCCGATGCAGATATTAAAAACT ATAGAGGATAATTGGAGGATCCGATGCAGATATTAAAAACT < 41bp 1 0.097711385100086 1 0.19489648938179 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C1S ENSG00000182326 CDS Human protein_coding chr12:7177213 chr12:7177194 stopgain 0.295 0 2 hm5C_associated_SNPs_17255 0 0 0 0 1 Nucleus 1 0.500231644935146 1 0.999536710129709 hm5C_site_18705 DeepMRMD:1;iRNA_m5C:0.999536710129709 18706 chr20 17956500 17956500 1 + G A BRCA 17956504 + 17956484 17956524 41 AAGTGCTGTTCAACATGAAACCTTAAACTATATAGGTCTGC AAGTGCTGTTCAACATAAAACCTTAAACTATATAGGTCTGC < 41bp 1 0.120172342757657 1 0.0861762464046478 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MGME1 ENSG00000125871 CDS Human protein_coding chr20:17956504 chr20:17956500 nonsynonymous SNV 0.944 0 17 hm5C_associated_SNPs_17256 0 0 1 0 1 chromatin 1 0.500232289400523 1 0.999535421198954 hm5C_site_18706 DeepMRMD:1;iRNA_m5C:0.999535421198954 18707 chr2 74643227 74643227 1 + C A BRCA 74643210 - 74643190 74643230 41 CTCGAGGAGGGCGAGGACGTCGTAGGGGACATCTTGGCCGA CTCTAGGAGGGCGAGGACGTCGTAGGGGACATCTTGGCCGA < 41bp 1 0.678906474565905 1 0.75799685716629 experiment 0.642187050868191 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C2orf81 ENSG00000159239 CDS Human protein_coding chr2:74643210 chr2:74643227 stopgain 0.337 0 4 hm5C_associated_SNPs_17257 0 0 0 0 1 exosome 1 0.500231643921092 0.48400628566742 0.999536712157815 hm5C_site_18707 DeepMRMD:0.48400628566742;iRNA_m5C:0.999536712157815 18708 chr3 111835691 111835691 1 + C T BRCA 111835672 + 111835652 111835692 41 TGGCTCTAAGCCCAGTAAAACAGCTCCCGAGCACTGCTTCA TGGCTCTAAGCCCAGTAAAACAGCTCCCGAGCACTGCTTTA < 41bp 1 0.489864240232882 1 0.493448525667191 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C3orf52 ENSG00000114529 CDS Human protein_coding chr3:111835672 chr3:111835691 nonsynonymous SNV 0.001 1 40 hm5C_associated_SNPs_17258 0 0 0 0 0 Ribosome 1 0.500231643736904 1 0.999536712526192 hm5C_site_18708 DeepMRMD:1;iRNA_m5C:0.999536712526192 18709 chr7 6634119 6634119 1 + C A BRCA 6634139 + 6634119 6634159 41 CTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA ATGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA < 41bp 1 0.0464847537557415 1 0.255788266658783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634139 chr7:6634119 stopgain 1.000 1 1 hm5C_associated_SNPs_17259 0 0 1 0 1 chromatin 1 0.500231428866775 1 0.999537142266451 hm5C_site_18709 DeepMRMD:1;iRNA_m5C:0.999537142266451 18710 chr9 139887830 139887830 1 + C A BRCA 139887814 + 139887794 139887834 41 GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCCCCCG GCTGCAGAAGAGACAGCTGTCAGCCCGAGGAAGAGCACCCG < 41bp 1 0.469580522423036 1 0.796630859375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887814 chr9:139887830 nonsynonymous SNV 0.004 0 37 hm5C_associated_SNPs_17260 0 0 1 0 2 Ribosome 1 0.500231640593735 0.40673828125 0.99953671881253 hm5C_site_18710 DeepMRMD:0.40673828125;iRNA_m5C:0.99953671881253 18711 chr9 95869982 95869982 1 + C G BRCA 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CCGCCTGGTGGAGGACACGCCTTTCCTGACAGGCCATGGGC < 41bp 1 0.0629020274428017 1 0.0597564280033112 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95869982 nonsynonymous SNV 0.994 2 11 hm5C_associated_SNPs_17261 0 0 1 0 1 Ribosome 1 0.500231655384479 1 0.999536689231042 hm5C_site_18711 DeepMRMD:1;iRNA_m5C:0.999536689231042 18712 chr19 13054630 13054630 1 + A G BRCA 13054643 + 13054623 13054663 41 GACAAGGAGGATGATGAGGACAAAGATGAGGATGAGGAGGA GACAAGGGGGATGATGAGGACAAAGATGAGGATGAGGAGGA < 41bp 1 0.577829624055757 1 0.495491772890091 experiment 0.844340751888486 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054643 chr19:13054630 nonsynonymous SNV 0.381 1 8 hm5C_associated_SNPs_17262 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18712 DeepMRMD:1;iRNA_m5C:0.999536712157815 18713 chr1 223934702 223934702 1 + C G BRCA 223934721 + 223934701 223934741 41 TCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT TGAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT < 41bp 1 0.0648255202167866 1 0.0443982481956482 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934721 chr1:223934702 nonsynonymous SNV 0.814 2 2 hm5C_associated_SNPs_17265 0 0 1 0 1 Ribosome 1 0.500231643470286 1 0.999536713059427 hm5C_site_18713 DeepMRMD:1;iRNA_m5C:0.999536713059427 18714 chr2 202141586 202141586 1 + C T BRCA 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTTGGGGATACTGTCTGATCATCAACAATCA < 41bp 1 0.255699739046773 1 0.106071382761002 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141586 nonsynonymous SNV 0.931 5 13 hm5C_associated_SNPs_17266 0 0 1 1 1 Nucleus 1 0.500282510995656 1 0.999434978008688 hm5C_site_18714 DeepMRMD:1;iRNA_m5C:0.999434978008688 18715 chr11 119142562 119142562 1 + G A BRCA 119142558 + 119142538 119142578 41 TCGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG TCGGATTACTAAAGCAGATGCTGCAGAATTTTGGAGAAAAG < 41bp 1 0.436756540975962 1 0.397668749094009 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119142558 chr11:119142562 synonymous SNV . 0 25 hm5C_associated_SNPs_17267 0 0 1 0 1 Ribosome 1 0.500230933547023 1 0.999538132905955 hm5C_site_18715 DeepMRMD:1;iRNA_m5C:0.999538132905955 18716 chr22 29177137 29177137 1 + G A BRCA 29177131 + 29177111 29177151 41 GAACCACAGTGTGAAGTTGCCCGAAGGAAGCTTCAGGAGAT GAACCACAGTGTGAAGTTGCCCGAAGAAAGCTTCAGGAGAT < 41bp 1 0.634056465780531 1 0.428922295570374 experiment 0.731887068438939 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC117 ENSG00000159873 CDS Human protein_coding chr22:29177131 chr22:29177137 synonymous SNV . 0 27 hm5C_associated_SNPs_17268 0 0 1 0 1 Ribosome 1 0.50023164398687 1 0.999536712026259 hm5C_site_18716 DeepMRMD:1;iRNA_m5C:0.999536712026259 18717 chrX 2641396 2641396 1 + G A BRCA 2641380 + 2641360 2641400 41 GGAGGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGA GGAGGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAAGGGA < 41bp 1 0.333662021760976 1 0.664326071739197 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2641380 chrX:2641396 nonsynonymous SNV 0.081 1 37 hm5C_associated_SNPs_17270 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643894407 0.671347856521606 0.999536712211187 hm5C_site_18717 DeepMRMD:0.671347856521606;iRNA_m5C:0.999536712211187 18718 chrX 2641396 2641396 1 + G A BRCA 2641383 + 2641363 2641403 41 GGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGAAGA GGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAAGGGAAGA < 41bp 1 0.295139723145893 1 0.428235709667206 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CD99 ENSG00000002586 CDS Human protein_coding chrX:2641383 chrX:2641396 nonsynonymous SNV 0.081 1 34 hm5C_associated_SNPs_17271 0 0 1 0 1 Endoplasmic reticulum 1 0.5002316439185 1 0.999536712163001 hm5C_site_18718 DeepMRMD:1;iRNA_m5C:0.999536712163001 18719 chrX 2641396 2641396 1 + G A BRCA 2641384 + 2641364 2641404 41 GCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGAAGAG GCAGTGATGGTGGAGGCAGCCACAGGAAAGAAAGGGAAGAG < 41bp 1 0.62455952489402 1 0.58272248506546 experiment 0.750880950211961 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CD99 ENSG00000002586 CDS Human protein_coding chrX:2641384 chrX:2641396 nonsynonymous SNV 0.081 1 33 hm5C_associated_SNPs_17272 0 0 1 0 1 Endoplasmic reticulum 1 0.500231692136898 0.83455502986908 0.999536615726204 hm5C_site_18719 DeepMRMD:0.83455502986908;iRNA_m5C:0.999536615726204 18720 chrX 2641359 2641359 1 + A T BRCA 2641365 + 2641345 2641385 41 TGTCTTGCAGGAAAAGGAGGCAGTGATGGTGGAGGCAGCCA TGTCTTGCAGGAAATGGAGGCAGTGATGGTGGAGGCAGCCA < 41bp 1 0.318026301486666 1 0.624962210655212 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2641365 chrX:2641359 nonsynonymous SNV 0.001 0 15 hm5C_associated_SNPs_17273 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164392107 0.750075578689576 0.99953671215786 hm5C_site_18720 DeepMRMD:0.750075578689576;iRNA_m5C:0.99953671215786 18721 chr5 130726778 130726778 1 + G A BRCA 130726785 + 130726765 130726805 41 TGGATACGAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA TGGATACGAAGGCAGGATAGCCCTGGTCCTTTCTCCAGTGA < 41bp 1 0.490552043673063 1 0.0907153487205505 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC42SE2 ENSG00000158985 CDS Human protein_coding chr5:130726785 chr5:130726778 synonymous SNV . 0 14 hm5C_associated_SNPs_17274 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18721 DeepMRMD:1;iRNA_m5C:0.999536712157815 18722 chr6 44360503 44360503 1 + G A BRCA 44360506 + 44360486 44360526 41 ATGCCAACTCAGTGGAGGACCATTGCTCCAATCATTGGAAG ATGCCAACTCAGTGGAGAACCATTGCTCCAATCATTGGAAG < 41bp 1 0.381962470199767 1 0.373475790023804 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC5L ENSG00000096401 CDS Human protein_coding chr6:44360506 chr6:44360503 synonymous SNV . 0 18 hm5C_associated_SNPs_17275 0 0 1 0 2 Nucleus 1 0.500231643821963 1 0.999536712356073 hm5C_site_18722 DeepMRMD:1;iRNA_m5C:0.999536712356073 18723 chr20 5163085 5163085 1 + C G BRCA 5163068 + 5163048 5163088 41 TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTGTAC < 41bp 1 0.172425129232482 1 0.0466034710407257 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDS2 ENSG00000101290 CDS Human protein_coding chr20:5163068 chr20:5163085 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_17276 0 0 1 0 2 chromatin 1 0.500231616046021 1 0.999536767907957 hm5C_site_18723 DeepMRMD:1;iRNA_m5C:0.999536767907957 18724 chr1 22332186 22332186 1 + G A BRCA 22332166 + 22332146 22332186 41 TGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTG TGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTA < 41bp 1 0.0693545243753377 1 0.138853281736374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332166 chr1:22332186 nonsynonymous SNV 0.037 1 41 hm5C_associated_SNPs_17277 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921509 1 0.999536712156982 hm5C_site_18724 DeepMRMD:1;iRNA_m5C:0.999536712156982 18725 chr1 22332186 22332186 1 + G A BRCA 22332167 + 22332147 22332187 41 GCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGA GCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTAA < 41bp 1 0.517384128543547 1 0.0767273604869843 experiment 0.965231742912907 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332167 chr1:22332186 nonsynonymous SNV 0.037 1 40 hm5C_associated_SNPs_17278 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643885607 1 0.999536712228787 hm5C_site_18725 DeepMRMD:1;iRNA_m5C:0.999536712228787 18726 chr1 22332186 22332186 1 + G A BRCA 22332170 + 22332150 22332190 41 TGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGAGTA TGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTAAGTA < 41bp 1 0.456760516597073 1 0.420293509960175 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332170 chr1:22332186 nonsynonymous SNV 0.037 1 37 hm5C_associated_SNPs_17279 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921072 1 0.999536712157855 hm5C_site_18726 DeepMRMD:1;iRNA_m5C:0.999536712157855 18727 chr1 22332186 22332186 1 + G A BRCA 22332191 + 22332171 22332211 41 CAGGTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGG CAGGTGGTGTTGGGTAAGTACAACCTTGCTGTGAAGGAGGG < 41bp 1 0.384999677872021 1 0.283089220523834 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332191 chr1:22332186 nonsynonymous SNV 0.037 1 16 hm5C_associated_SNPs_17280 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_18727 DeepMRMD:1;iRNA_m5C:0.999536712157815 18728 chr1 22332186 22332186 1 + G A BRCA 22332194 + 22332174 22332214 41 GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC GTGGTGTTGGGTAAGTACAACCTTGCTGTGAAGGAGGGCCC < 41bp 1 0.0874202388841005 1 0.225413680076599 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332194 chr1:22332186 nonsynonymous SNV 0.037 1 13 hm5C_associated_SNPs_17281 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_18728 DeepMRMD:1;iRNA_m5C:0.999536712157816 18729 chr1 22332186 22332186 1 + G A BRCA 22332195 + 22332175 22332215 41 TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC TGGTGTTGGGTAAGTACAACCTTGCTGTGAAGGAGGGCCCC < 41bp 1 0.482162285810494 1 0.124218344688416 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332195 chr1:22332186 nonsynonymous SNV 0.037 1 12 hm5C_associated_SNPs_17282 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921393 1 0.999536712157214 hm5C_site_18729 DeepMRMD:1;iRNA_m5C:0.999536712157214 18730 chr1 22332186 22332186 1 + G A BRCA 22332199 + 22332179 22332219 41 GTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGC GTTGGGTAAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.612530559698454 1 0.0815833508968353 experiment 0.774938880603092 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332199 chr1:22332186 nonsynonymous SNV 0.037 1 8 hm5C_associated_SNPs_17283 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921089 1 0.999536712157822 hm5C_site_18730 DeepMRMD:1;iRNA_m5C:0.999536712157822 18731 chr1 22307568 22307568 1 + G A BRCA 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGGTGTTGGGCGAGTACAACCGTGCTGTGAA < 41bp 1 0.625632257866794 1 0.518433690071106 experiment 0.748735484266411 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307568 nonsynonymous SNV 0.001 1 28 hm5C_associated_SNPs_17284 0 0 0 0 2 unknown 1 0.500231643886624 0.963132619857788 0.999536712226752 hm5C_site_18731 DeepMRMD:0.963132619857788;iRNA_m5C:0.999536712226752 18732 chr1 22307568 22307568 1 + G A BRCA 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTACAACCGTGCTGTGAAGGAGGG < 41bp 1 0.360974931647118 1 0.413004577159882 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307568 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_17285 0 0 0 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_18732 DeepMRMD:1;iRNA_m5C:0.999536712157815 18733 chr1 22307568 22307568 1 + G A BRCA 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTACAACCGTGCTGTGAAGGAGGGCCC < 41bp 1 0.367345774188158 1 0.702282249927521 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307568 nonsynonymous SNV 0.001 1 19 hm5C_associated_SNPs_17286 0 0 0 0 2 unknown 1 0.500231643911543 0.595435500144958 0.999536712176914 hm5C_site_18733 DeepMRMD:0.595435500144958;iRNA_m5C:0.999536712176914 18734 chr1 22307568 22307568 1 + G A BRCA 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACAACCGTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.503058015157978 1 0.0909658968448639 experiment 0.993883969684043 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307568 nonsynonymous SNV 0.001 1 14 hm5C_associated_SNPs_17287 0 0 0 0 2 unknown 1 0.500231651715962 1 0.999536696568077 hm5C_site_18734 DeepMRMD:1;iRNA_m5C:0.999536696568077 18735 chr1 22307568 22307568 1 + G A BRCA 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT AACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.231030905036163 1 0.134238660335541 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307568 nonsynonymous SNV 0.001 1 1 hm5C_associated_SNPs_17288 0 0 0 0 2 unknown 1 0.500231643921491 1 0.999536712157018 hm5C_site_18735 DeepMRMD:1;iRNA_m5C:0.999536712157018 18736 chr18 13057640 13057640 1 + G A BRCA 13057639 + 13057619 13057659 41 CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCAG CATGCTTGCTGTGTCGGGATCACTTCCCAGACCCTCCTCAG < 41bp 1 0.265275281004078 1 0.107340753078461 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13057639 chr18:13057640 nonsynonymous SNV 0.943 2 22 hm5C_associated_SNPs_17289 0 0 1 0 2 Nucleus 1 0.500231643910416 1 0.999536712179169 hm5C_site_18736 DeepMRMD:1;iRNA_m5C:0.999536712179169 18737 chr2 65299971 65299971 1 + G T BRCA 65299976 + 65299956 65299996 41 AGCAGCCAGGCCCTCGGGGTCTCCTCTGGACTGCTGAAAAC AGCAGCCAGGCCCTCTGGGTCTCCTCTGGACTGCTGAAAAC < 41bp 1 0.452203457330682 1 0.42937245965004 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP68 ENSG00000011523 CDS Human protein_coding chr2:65299976 chr2:65299971 nonsynonymous SNV 0.085 3 16 hm5C_associated_SNPs_17290 0 0 0 0 0 Cytosol 1 0.500231643921867 1 0.999536712156265 hm5C_site_18737 DeepMRMD:1;iRNA_m5C:0.999536712156265 18738 chr16 67006796 67006796 1 + C T BRCA 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAATTTAACCAGGCGGAACAATATCTGGAGATCAACCCA < 41bp 1 0.301215573003345 1 0.307879149913788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006796 synonymous SNV . 0 8 hm5C_associated_SNPs_17291 0 0 1 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18738 DeepMRMD:1;iRNA_m5C:0.999536712157815 18739 chr19 4442293 4442293 1 + G A BRCA 4442277 + 4442257 4442297 41 ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGA ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAAAGGA < 41bp 1 0.632526066252781 1 0.290593087673187 experiment 0.734947867494438 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442277 chr19:4442293 nonsynonymous SNV 0.987 2 37 hm5C_associated_SNPs_17292 0 0 1 0 2 Nucleus 1 0.500231643914581 1 0.999536712170837 hm5C_site_18739 DeepMRMD:1;iRNA_m5C:0.999536712170837 18740 chr17 7798780 7798780 1 + C T BRCA 7798785 + 7798765 7798805 41 CCCCCCCGTCCTCTTCAAGGCAGATCAGAGCGAGAGTTCTT CCCCCCCGTCCTCTTTAAGGCAGATCAGAGCGAGAGTTCTT < 41bp 1 0.129554995740629 1 0.237775444984436 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7798785 chr17:7798780 stopgain 1.000 1 16 hm5C_associated_SNPs_17294 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18740 DeepMRMD:1;iRNA_m5C:0.999536712157815 18741 chr8 23114072 23114072 1 + C T BRCA 23114068 + 23114048 23114088 41 ATGCAGAGTGAACAGCTTCTCTCACGCAAAGTGGAGTCCTT ATGCAGAGTGAACAGCTTCTCTCATGCAAAGTGGAGTCCTT < 41bp 1 0.513983171880358 1 0.120754420757294 experiment 0.972033656239284 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23114068 chr8:23114072 nonsynonymous SNV 0.705 3 25 hm5C_associated_SNPs_17295 0 0 1 0 2 Ribosome 1 0.500231729090324 1 0.999536541819351 hm5C_site_18741 DeepMRMD:1;iRNA_m5C:0.999536541819351 18742 chr8 23114072 23114072 1 + C T BRCA 23114070 + 23114050 23114090 41 GCAGAGTGAACAGCTTCTCTCACGCAAAGTGGAGTCCTTAT GCAGAGTGAACAGCTTCTCTCATGCAAAGTGGAGTCCTTAT < 41bp 1 0.278313723268212 1 0.0988568961620331 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23114070 chr8:23114072 nonsynonymous SNV 0.705 3 23 hm5C_associated_SNPs_17296 0 0 1 0 2 Ribosome 1 0.500231347560092 1 0.999537304879815 hm5C_site_18742 DeepMRMD:1;iRNA_m5C:0.999537304879815 18743 chr3 142840898 142840898 1 + G A BRCA 142840885 + 142840865 142840905 41 GCTAAGACGCTGCAGACAGCCCTGCAGCCCCCTGACTGGCT GCTAAGACGCTGCAGACAGCCCTGCAGCCCCCTAACTGGCT < 41bp 1 0.0958547302287436 1 0.0859431326389313 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840885 chr3:142840898 nonsynonymous SNV 0.982 2 34 hm5C_associated_SNPs_17298 0 0 1 0 0 cytosol 1 0.500231643920964 1 0.999536712158072 hm5C_site_18743 DeepMRMD:1;iRNA_m5C:0.999536712158072 18744 chr3 142840898 142840898 1 + G A BRCA 142840893 + 142840873 142840913 41 GCTGCAGACAGCCCTGCAGCCCCCTGACTGGCTGCAGGGCC GCTGCAGACAGCCCTGCAGCCCCCTAACTGGCTGCAGGGCC < 41bp 1 0.223807239733341 1 0.138791859149933 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840893 chr3:142840898 nonsynonymous SNV 0.982 2 26 hm5C_associated_SNPs_17299 0 0 1 0 0 cytosol 1 0.500231643921068 1 0.999536712157864 hm5C_site_18744 DeepMRMD:1;iRNA_m5C:0.999536712157864 18745 chr3 142840898 142840898 1 + G A BRCA 142840907 + 142840887 142840927 41 TGCAGCCCCCTGACTGGCTGCAGGGCCACTACCTGGTGGTG TGCAGCCCCCTAACTGGCTGCAGGGCCACTACCTGGTGGTG < 41bp 1 0.470276667380794 1 0.648208439350128 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840907 chr3:142840898 nonsynonymous SNV 0.982 2 12 hm5C_associated_SNPs_17300 0 0 1 0 0 cytosol 1 0.500231643996877 0.703583121299744 0.999536712006247 hm5C_site_18745 DeepMRMD:0.703583121299744;iRNA_m5C:0.999536712006247 18746 chr13 77574712 77574712 1 + T C BRCA 77574692 + 77574672 77574712 41 AGCCAGCCCAGAAAAGGGGGCAGAGACATGGTTTGATTCCT AGCCAGCCCAGAAAAGGGGGCAGAGACATGGTTTGATTCCC < 41bp 1 0.327370531773693 1 0.367878079414368 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77574692 chr13:77574712 nonsynonymous SNV 0.805 4 41 hm5C_associated_SNPs_17301 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_18746 DeepMRMD:1;iRNA_m5C:0.999536712157815 18747 chr17 40715174 40715174 1 + C T BRCA 40715191 + 40715171 40715211 41 TTCCCCCGTGGCCGGGTCTCCAAAGCAGCCGGTGCGTGGCT TTCTCCCGTGGCCGGGTCTCCAAAGCAGCCGGTGCGTGGCT < 41bp 1 0.552101410843326 1 0.625957489013672 experiment 0.895797178313349 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40715191 chr17:40715174 synonymous SNV . 0 4 hm5C_associated_SNPs_17303 0 0 1 0 0 Ribosome 1 0.500231648156394 0.748085021972656 0.999536703687212 hm5C_site_18747 DeepMRMD:0.748085021972656;iRNA_m5C:0.999536703687212 18748 chr9 101765816 101765816 1 + G T BRCA 101765812 + 101765792 101765832 41 GCAGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTC GCAGAGGCCAGCAGTGTGCCCACCTGGGGACCAACCCTCTC < 41bp 1 0.548966605380344 1 0.131068140268326 experiment 0.902066789239311 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765812 chr9:101765816 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_17304 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643909996 1 0.999536712180008 hm5C_site_18748 DeepMRMD:1;iRNA_m5C:0.999536712180008 18749 chr9 101765816 101765816 1 + G T BRCA 101765814 + 101765794 101765834 41 AGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTA AGAGGCCAGCAGTGTGCCCACCTGGGGACCAACCCTCTCTA < 41bp 1 0.375346783077983 1 0.77541196346283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765814 chr9:101765816 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_17305 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.44917607307434 0.999536712157815 hm5C_site_18749 DeepMRMD:0.44917607307434;iRNA_m5C:0.999536712157815 18750 chr9 101765816 101765816 1 + G T BRCA 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCTGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG < 41bp 1 0.266488765513418 1 0.205458015203476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765816 nonsynonymous SNV 0.000 3 5 hm5C_associated_SNPs_17306 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_18750 DeepMRMD:1;iRNA_m5C:0.999536712157815 18751 chr3 148559668 148559668 1 + G A BRCA 148559686 + 148559666 148559706 41 CAGAGAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAA CAAAGAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAA < 41bp 1 0.0583673590638886 1 0.0300377011299133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559686 chr3:148559668 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_17307 0 0 0 0 2 exosome 1 0.500231645849166 1 0.999536708301667 hm5C_site_18751 DeepMRMD:1;iRNA_m5C:0.999536708301667 18752 chr16 57153125 57153125 1 + G C BRCA 57153128 + 57153108 57153148 41 ACCTCTTTGGGAAGTCAGACCCCTTTCTGGAGTTTTATAAG ACCTCTTTGGGAAGTCACACCCCTTTCTGGAGTTTTATAAG < 41bp 1 0.0592762405349981 1 0.0835315585136414 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57153128 chr16:57153125 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_17308 0 0 0 0 2 chromatin 1 0.500231643921089 1 0.999536712157822 hm5C_site_18752 DeepMRMD:1;iRNA_m5C:0.999536712157822 18753 chr9 35733103 35733103 1 + C G BRCA 35733112 + 35733092 35733132 41 CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT CATGACCACACGTACTCCCTCCCACGGGAAACTGTCTCTAT < 41bp 1 0.144283842368741 1 0.136001586914062 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733112 chr9:35733103 synonymous SNV . 0 12 hm5C_associated_SNPs_17309 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643677551 1 0.999536712644897 hm5C_site_18753 DeepMRMD:1;iRNA_m5C:0.999536712644897 18754 chr9 35733103 35733103 1 + C G BRCA 35733113 + 35733093 35733133 41 ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG ATGACCACACGTACTCCCTCCCACGGGAAACTGTCTCTATG < 41bp 1 0.16050967340135 1 0.182448983192444 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733113 chr9:35733103 synonymous SNV . 0 11 hm5C_associated_SNPs_17310 0 0 1 0 1 Endoplasmic reticulum 1 0.499607111118926 1 1 hm5C_site_18754 DeepMRMD:1;iRNA_m5C:1 18755 chr2 36668460 36668460 1 + G A BRCA 36668446 + 36668426 36668466 41 CCGCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT CCGCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTAAAGATT < 41bp 1 0.62793930195019 1 0.715425372123718 experiment 0.74412139609962 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668446 chr2:36668460 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_17311 0 0 1 0 1 Nucleus 1 0.500231643931157 0.569149255752564 0.999536712137687 hm5C_site_18755 DeepMRMD:0.569149255752564;iRNA_m5C:0.999536712137687 18756 chr2 36668460 36668460 1 + G A BRCA 36668448 + 36668428 36668468 41 GCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATTCT GCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTAAAGATTCT < 41bp 1 0.527981222846848 1 0.501047313213348 experiment 0.944037554306304 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668448 chr2:36668460 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_17312 0 0 1 0 1 Nucleus 1 0.500231643920355 0.997905373573304 0.99953671215929 hm5C_site_18756 DeepMRMD:0.997905373573304;iRNA_m5C:0.99953671215929 18757 chr1 110466502 110466502 1 + C G BRCA 110466513 + 110466493 110466533 41 CCACCCTCTCTGCTCAGCCACAGCTTTCCAGAAGCCACTCC CCACCCTCTGTGCTCAGCCACAGCTTTCCAGAAGCCACTCC < 41bp 1 0.451092450149638 1 0.0571897923946381 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466513 chr1:110466502 nonsynonymous SNV 0.004 1 10 hm5C_associated_SNPs_17313 0 0 0 0 0 chromatin 1 0.500231643912986 1 0.999536712174029 hm5C_site_18757 DeepMRMD:1;iRNA_m5C:0.999536712174029 18758 chr1 112999478 112999478 1 + T A BRCA 112999460 + 112999440 112999480 41 TAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGGATCA TAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGGAACA < 41bp 1 0.376403526009923 1 0.0590434074401855 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999460 chr1:112999478 nonsynonymous SNV 0.998 2 39 hm5C_associated_SNPs_17314 0 0 0 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18758 DeepMRMD:1;iRNA_m5C:0.999536712157815 18759 chr1 112999478 112999478 1 + T A BRCA 112999467 + 112999447 112999487 41 CCTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACG CCTGGCTACCAGTCATCGTACCAAGTAGGGAACAACCAACG < 41bp 1 0.265179003544863 1 0.51737368106842 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999467 chr1:112999478 nonsynonymous SNV 0.998 2 32 hm5C_associated_SNPs_17315 0 0 0 1 0 Ribosome 1 0.500231643921092 0.96525263786316 0.999536712157815 hm5C_site_18759 DeepMRMD:0.96525263786316;iRNA_m5C:0.999536712157815 18760 chr1 112999478 112999478 1 + T A BRCA 112999468 + 112999448 112999488 41 CTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACGG CTGGCTACCAGTCATCGTACCAAGTAGGGAACAACCAACGG < 41bp 1 0.474637723695198 1 0.167675673961639 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999468 chr1:112999478 nonsynonymous SNV 0.998 2 31 hm5C_associated_SNPs_17316 0 0 0 1 0 Ribosome 1 0.500231644067229 1 0.999536711865542 hm5C_site_18760 DeepMRMD:1;iRNA_m5C:0.999536711865542 18761 chr5 64267547 64267547 1 + G A BRCA 64267545 + 64267525 64267565 41 TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGAAT TTTAGAGGAAGAAGCCCCTCCAAATGGTGCTGTTGCCGAAT < 41bp 1 0.161117283176351 1 0.666225910186768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64267545 chr5:64267547 nonsynonymous SNV 0.978 1 23 hm5C_associated_SNPs_17317 0 0 1 0 2 Nucleus 1 0.500231643921092 0.667548179626464 0.999536712157815 hm5C_site_18761 DeepMRMD:0.667548179626464;iRNA_m5C:0.999536712157815 18762 chrX 105855830 105855830 1 + C T BRCA 105855825 + 105855805 105855845 41 AACTCCCTTCAGAAATAGAGCGCACCAGGAGAAACCAGAGA AACTCCCTTCAGAAATAGAGCGCACTAGGAGAAACCAGAGA < 41bp 1 0.295153279507515 1 0.226531803607941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105855825 chrX:105855830 stopgain 0.968 0 26 hm5C_associated_SNPs_17318 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18762 DeepMRMD:1;iRNA_m5C:0.999536712157815 18763 chrX 105855830 105855830 1 + C T BRCA 105855849 + 105855829 105855869 41 CCAGGAGAAACCAGAGAGGCCTTTAAGAGGCGGGAAGAGTC CTAGGAGAAACCAGAGAGGCCTTTAAGAGGCGGGAAGAGTC < 41bp 1 0.215600699906541 1 0.164468169212341 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105855849 chrX:105855830 stopgain 0.968 0 2 hm5C_associated_SNPs_17320 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18763 DeepMRMD:1;iRNA_m5C:0.999536712157815 18764 chr19 41711922 41711922 1 + C A BRCA 41711910 + 41711890 41711930 41 TCCATCCTGCATGACCCCAACATCTTCAAGCACCCAGAAGA TCCATCCTGCATGACCCCAACATCTTCAAGCAACCAGAAGA < 41bp 1 0.0911277325510972 1 0.058115690946579 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41711910 chr19:41711922 nonsynonymous SNV 0.107 0 33 hm5C_associated_SNPs_17321 0 0 0 0 2 Ribosome 1 0.500231643905398 1 0.999536712189205 hm5C_site_18764 DeepMRMD:1;iRNA_m5C:0.999536712189205 18765 chr2 242695381 242695381 1 + G A BRCA 242695362 + 242695342 242695382 41 CCTGTGGAGCGGCTCTACGACATCGTGACTGACCTGCGCGC CCTGTGGAGCGGCTCTACGACATCGTGACTGACCTGCGCAC < 41bp 1 0.562835809189857 1 0.168179124593735 experiment 0.874328381620285 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242695362 chr2:242695381 nonsynonymous SNV 0.001 1 40 hm5C_associated_SNPs_17322 3 0 1 0 0 Ribosome 1 0.500231643559831 1 0.999536712880338 hm5C_site_18765 DeepMRMD:1;iRNA_m5C:0.999536712880338 D-2-hydroxyglutaric aciduria 1 D-2-hydroxyglutaric aciduria 1 18766 chr11 61105416 61105416 1 + T A BRCA 61105415 + 61105395 61105435 41 CTCACTCCTCCCTTGCAGACCTCCAAGAAGCTGGTGAACTC CTCACTCCTCCCTTGCAGACCACCAAGAAGCTGGTGAACTC < 41bp 1 0.626592318021504 1 0.262101888656616 experiment 0.746815363956993 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61105415 chr11:61105416 nonsynonymous SNV 0.698 0 22 hm5C_associated_SNPs_17323 0 0 1 0 0 Cytosol 1 0.500231643920535 1 0.99953671215893 hm5C_site_18766 DeepMRMD:1;iRNA_m5C:0.99953671215893 18767 chr10 70737326 70737326 1 + A G BRCA 70737312 + 70737292 70737332 41 GATTCCGTGCCTCCCACTGCCATTAGTCACTTCAAACAATC GATTCCGTGCCTCCCACTGCCATTAGTCACTTCAGACAATC < 41bp 1 0.413565739723197 1 0.0159196853637695 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70737312 chr10:70737326 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_17326 0 0 1 0 1 Nucleus 1 0.500231643972629 1 0.999536712054741 hm5C_site_18767 DeepMRMD:1;iRNA_m5C:0.999536712054741 18768 chr10 70737298 70737298 1 + G A BRCA 70737312 + 70737292 70737332 41 GATTCCGTGCCTCCCACTGCCATTAGTCACTTCAAACAATC GATTCCATGCCTCCCACTGCCATTAGTCACTTCAAACAATC < 41bp 1 0.403141327832424 1 0.0113374292850494 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70737312 chr10:70737298 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_17327 0 0 1 0 1 Nucleus 1 0.500231643929695 1 0.999536712140611 hm5C_site_18768 DeepMRMD:1;iRNA_m5C:0.999536712140611 18769 chr10 70666626 70666626 1 + G T BRCA 70666624 + 70666604 70666644 41 AGAAGGATTTAATAGACTTTCAGATGAATTCTCCAAATCTC AGAAGGATTTAATAGACTTTCATATGAATTCTCCAAATCTC < 41bp 1 0.226880938948213 1 0.0741825699806213 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX50 ENSG00000107625 CDS Human protein_coding chr10:70666624 chr10:70666626 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_17328 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_18769 DeepMRMD:1;iRNA_m5C:0.999536712157814 18770 chr21 47978254 47978254 1 + G A BRCA 47978252 + 47978232 47978272 41 AAGGACCTGGGCCTGCCGGCCCGCGCCGTAAGCACCACGTT AAGGACCTGGGCCTGCCGGCCCACGCCGTAAGCACCACGTT < 41bp 1 0.202694271485687 1 0.300191879272461 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47978252 chr21:47978254 nonsynonymous SNV 0.125 4 23 hm5C_associated_SNPs_17329 0 0 1 0 1 Cytosol 1 0.500231644770276 1 0.999536710459447 hm5C_site_18770 DeepMRMD:1;iRNA_m5C:0.999536710459447 18771 chr7 96639271 96639271 1 + G C BRCA 96639277 + 96639257 96639297 41 GGCCAAGGGTGTCAGTATGCCCCCCAACAGCTACATGCCTG GGCCAAGGGTGTCACTATGCCCCCCAACAGCTACATGCCTG < 41bp 1 0.272692871387295 1 0.118355184793472 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DLX6 ENSG00000006377 CDS Human protein_coding chr7:96639277 chr7:96639271 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_17330 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18771 DeepMRMD:1;iRNA_m5C:0.999536712157815 18772 chr20 31374344 31374344 1 + G A BRCA 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGAAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG < 41bp 1 0.339033094924769 1 0.502367794513702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374344 nonsynonymous SNV 0.729 1 4 hm5C_associated_SNPs_17331 0 0 0 0 1 chromatin 1 0.500231643923148 0.995264410972596 0.999536712153704 hm5C_site_18772 DeepMRMD:0.995264410972596;iRNA_m5C:0.999536712153704 18773 chr20 31374344 31374344 1 + G A BRCA 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGAAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG < 41bp 1 0.626523929814516 1 0.520589351654053 experiment 0.746952140370969 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374344 nonsynonymous SNV 0.729 1 3 hm5C_associated_SNPs_17332 0 0 0 0 1 chromatin 1 0.500231643921146 0.958821296691894 0.999536712157708 hm5C_site_18773 DeepMRMD:0.958821296691894;iRNA_m5C:0.999536712157708 18774 chr8 25149578 25149578 1 + G A BRCA 25149584 + 25149564 25149604 41 CAGCTGCAGCAGATGACGTACAGCCTGATCGAGTGGCGGTC CAGCTGCAGCAGATAACGTACAGCCTGATCGAGTGGCGGTC < 41bp 1 0.246530105979187 1 0.202793091535568 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149584 chr8:25149578 nonsynonymous SNV 0.996 2 15 hm5C_associated_SNPs_17333 0 0 1 0 1 Nucleus 1 0.500231643930912 1 0.999536712138176 hm5C_site_18774 DeepMRMD:1;iRNA_m5C:0.999536712138176 18775 chr7 76111950 76111950 1 + C G BRCA 76111966 + 76111946 76111986 41 CTATCTGGAGCAGCAGGTGGCCAGGGGCAACCAGCTCGTGG CTATGTGGAGCAGCAGGTGGCCAGGGGCAACCAGCTCGTGG < 41bp 1 0.505525806275023 1 0.805597305297852 experiment 0.988948387449954 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DTX2 ENSG00000091073 CDS Human protein_coding chr7:76111966 chr7:76111950 nonsynonymous SNV 0.996 1 5 hm5C_associated_SNPs_17334 0 0 0 0 0 Nucleus 1 0.500231643923655 0.388805389404296 0.999536712152689 hm5C_site_18775 DeepMRMD:0.388805389404296;iRNA_m5C:0.999536712152689 18776 chr21 38853104 38853104 1 + G C BRCA 38853089 + 38853069 38853109 41 GAAAAGTGGATGGATCGTTACGAAATTGACTCCTTGATAGG GAAAAGTGGATGGATCGTTACGAAATTGACTCCTTCATAGG < 41bp 1 0.665634979165957 1 0.835657596588135 experiment 0.668730041668085 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38853089 chr21:38853104 nonsynonymous SNV 0.999 4 36 hm5C_associated_SNPs_17335 0 0 1 0 1 Cytosol 1 0.500231832301127 0.32868480682373 0.999536335397746 hm5C_site_18776 DeepMRMD:0.32868480682373;iRNA_m5C:0.999536335397746 18777 chr16 67917881 67917881 1 + C A BRCA 67917892 + 67917872 67917912 41 GCCGTGATGCACCTGGACCACAGTGACCCCATCACTCGGGA GCCGTGATGAACCTGGACCACAGTGACCCCATCACTCGGGA < 41bp 1 0.496169500150264 1 0.25502610206604 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917892 chr16:67917881 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_17336 0 0 1 0 1 Cytosol 1 0.50023163965208 1 0.999536720695839 hm5C_site_18777 DeepMRMD:1;iRNA_m5C:0.999536720695839 18778 chr1 155058975 155058975 1 + G T BRCA 155058986 + 155058966 155059006 41 CTGCCCCTGGCCGTGGGCATCGCCTTCTTCCTCATGACGTT CTGCCCCTGTCCGTGGGCATCGCCTTCTTCCTCATGACGTT < 41bp 1 0.504857901845175 1 0.386984765529633 experiment 0.990284196309649 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA3 ENSG00000143590;ENSG00000251246 CDS Human other chr1:155058986 chr1:155058975 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_17337 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18778 DeepMRMD:1;iRNA_m5C:0.999536712157815 18779 chr1 36358824 36358824 1 + C G BRCA 36358839 + 36358819 36358859 41 CTGTTCCCTTGGAGTCTGTGCAAGCCCTGGATGTGGCCATG CTGTTGCCTTGGAGTCTGTGCAAGCCCTGGATGTGGCCATG < 41bp 1 0.352373186708627 1 0.284176111221313 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGO1 ENSG00000092847 CDS Human protein_coding chr1:36358839 chr1:36358824 nonsynonymous SNV 0.996 3 6 hm5C_associated_SNPs_17338 0 0 1 0 1 Cytosol 1 0.500231643921467 1 0.999536712157066 hm5C_site_18779 DeepMRMD:1;iRNA_m5C:0.999536712157066 18780 chr14 103802230 103802230 1 + C G BRCA 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACCGCAGCGTGTCAGAGCAGTTCTATCGCTACAAGATG < 41bp 1 0.178291246064998 1 0.112993866205215 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802230 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_17339 0 0 1 0 1 Cytosol 1 0.500231886800903 1 0.999536226398194 hm5C_site_18780 DeepMRMD:1;iRNA_m5C:0.999536226398194 18781 chr1 154232226 154232226 1 + G A BRCA 154232218 + 154232198 154232238 41 CAAGTGGGCATACCCGTAGACCTTGTCTGACTGTGCTCATG CAAGTGGGCATACCCGTAGACCTTGTCTAACTGTGCTCATG < 41bp 1 0.0297002620203836 1 0.0104533731937408 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA58B ENSG00000201129 ncRNA_exonic Human snoRNA chr1:154232218 chr1:154232226 . . 0 29 hm5C_associated_SNPs_17340 0 0 1 0 0 unknown 1 0.500231643898694 1 0.999536712202613 hm5C_site_18781 DeepMRMD:1;iRNA_m5C:0.999536712202613 18782 chr1 154232226 154232226 1 + G A BRCA 154232228 + 154232208 154232248 41 TACCCGTAGACCTTGTCTGACTGTGCTCATGGCCAGGCAGG TACCCGTAGACCTTGTCTAACTGTGCTCATGGCCAGGCAGG < 41bp 1 0.196398107714396 1 0.105987340211868 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA58B ENSG00000201129 ncRNA_exonic Human snoRNA chr1:154232228 chr1:154232226 . . 0 19 hm5C_associated_SNPs_17341 0 0 1 0 0 unknown 1 0.50023164392107 1 0.999536712157861 hm5C_site_18782 DeepMRMD:1;iRNA_m5C:0.999536712157861 18783 chr1 154232226 154232226 1 + G A BRCA 154232233 + 154232213 154232253 41 GTAGACCTTGTCTGACTGTGCTCATGGCCAGGCAGGGGGGA GTAGACCTTGTCTAACTGTGCTCATGGCCAGGCAGGGGGGA < 41bp 1 0.0981176978915694 1 0.081933468580246 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA58B ENSG00000201129 ncRNA_exonic Human snoRNA chr1:154232233 chr1:154232226 . . 0 14 hm5C_associated_SNPs_17342 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_18783 DeepMRMD:1;iRNA_m5C:0.999536712157812 18784 chr1 154232226 154232226 1 + G A BRCA 154232240 + 154232220 154232260 41 TTGTCTGACTGTGCTCATGGCCAGGCAGGGGGGACAGTGTA TTGTCTAACTGTGCTCATGGCCAGGCAGGGGGGACAGTGTA < 41bp 1 0.187191076844182 1 0.295532166957855 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA58B ENSG00000201129 ncRNA_exonic Human snoRNA chr1:154232240 chr1:154232226 . . 0 7 hm5C_associated_SNPs_17343 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_18784 DeepMRMD:1;iRNA_m5C:0.999536712157815 18785 chr1 154232226 154232226 1 + G A BRCA 154232241 + 154232221 154232261 41 TGTCTGACTGTGCTCATGGCCAGGCAGGGGGGACAGTGTAT TGTCTAACTGTGCTCATGGCCAGGCAGGGGGGACAGTGTAT < 41bp 1 0.279989484328419 1 0.664708077907562 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA58B ENSG00000201129 ncRNA_exonic Human snoRNA chr1:154232241 chr1:154232226 . . 0 6 hm5C_associated_SNPs_17344 0 0 1 0 0 unknown 1 0.50023164412233 0.670583844184876 0.99953671175534 hm5C_site_18785 DeepMRMD:0.670583844184876;iRNA_m5C:0.99953671175534 18786 chr1 154232226 154232226 1 + G A BRCA 154232245 + 154232225 154232265 41 TGACTGTGCTCATGGCCAGGCAGGGGGGACAGTGTATGCAA TAACTGTGCTCATGGCCAGGCAGGGGGGACAGTGTATGCAA < 41bp 1 0.617428817714739 1 0.86819851398468 experiment 0.765142364570522 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA58B ENSG00000201129 ncRNA_exonic Human snoRNA chr1:154232245 chr1:154232226 . . 0 2 hm5C_associated_SNPs_17345 0 0 1 0 0 unknown 1 0.500231643939237 0.26360297203064 0.999536712121526 hm5C_site_18786 DeepMRMD:0.26360297203064;iRNA_m5C:0.999536712121526 18787 chrY 10037864 10037864 1 + G A BRCA 10037852 + 10037832 10037872 41 GAATTGCAGGACACATTGATCATCGACACTTCGAACGCACT GAATTGCAGGACACATTGATCATCGACACTTCAAACGCACT < 41bp 1 0.193888235138465 1 0.170015931129456 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout|27356879;GSE66010;miCLIP;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037852 chrY:10037864 . . 0 33 hm5C_associated_SNPs_17346 0 0 1 0 0 unknown 1 0.50256653359019 1 0.99486693281962 hm5C_site_18787 DeepMRMD:1;iRNA_m5C:0.99486693281962 18788 chrY 10037864 10037864 1 + G A BRCA 10037858 + 10037838 10037878 41 CAGGACACATTGATCATCGACACTTCGAACGCACTTGCGGC CAGGACACATTGATCATCGACACTTCAAACGCACTTGCGGC < 41bp 1 0.124694569377074 1 0.25728178024292 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037858 chrY:10037864 . . 0 27 hm5C_associated_SNPs_17348 0 0 1 0 0 unknown 1 0.500574699937836 1 0.998850600124327 hm5C_site_18788 DeepMRMD:1;iRNA_m5C:0.998850600124327 18789 chrY 10037864 10037864 1 + G A BRCA 10037860 + 10037840 10037880 41 GGACACATTGATCATCGACACTTCGAACGCACTTGCGGCCC GGACACATTGATCATCGACACTTCAAACGCACTTGCGGCCC < 41bp 1 0.579668338156223 1 0.401710569858551 experiment 0.840663323687554 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037860 chrY:10037864 . . 0 25 hm5C_associated_SNPs_17349 0 0 1 0 0 unknown 1 0.50023164392351 1 0.99953671215298 hm5C_site_18789 DeepMRMD:1;iRNA_m5C:0.99953671215298 18790 chrY 10037864 10037864 1 + G A BRCA 10037863 + 10037843 10037883 41 CACATTGATCATCGACACTTCGAACGCACTTGCGGCCCGGG CACATTGATCATCGACACTTCAAACGCACTTGCGGCCCGGG < 41bp 1 0.148150829521581 1 0.0410185158252716 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037863 chrY:10037864 . . 0 22 hm5C_associated_SNPs_17350 0 0 1 0 0 unknown 1 0.500231643942144 1 0.999536712115713 hm5C_site_18790 DeepMRMD:1;iRNA_m5C:0.999536712115713 18791 chrY 10037864 10037864 1 + G A BRCA 10037867 + 10037847 10037887 41 TTGATCATCGACACTTCGAACGCACTTGCGGCCCGGGTTCC TTGATCATCGACACTTCAAACGCACTTGCGGCCCGGGTTCC < 41bp 1 0.4101732901165 1 0.0997254848480225 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037867 chrY:10037864 . . 0 18 hm5C_associated_SNPs_17351 0 0 1 0 0 unknown 1 0.500231643902019 1 0.999536712195962 hm5C_site_18791 DeepMRMD:1;iRNA_m5C:0.999536712195962 18792 chrY 10037864 10037864 1 + G A BRCA 10037869 + 10037849 10037889 41 GATCATCGACACTTCGAACGCACTTGCGGCCCGGGTTCCTC GATCATCGACACTTCAAACGCACTTGCGGCCCGGGTTCCTC < 41bp 1 0.314068635362872 1 0.0768290758132935 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037869 chrY:10037864 . . 0 16 hm5C_associated_SNPs_17352 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_18792 DeepMRMD:1;iRNA_m5C:0.999536712157815 18793 chrY 10037856 10037856 1 + G A BRCA 10037852 + 10037832 10037872 41 GAATTGCAGGACACATTGATCATCGACACTTCGAACGCACT GAATTGCAGGACACATTGATCATCAACACTTCGAACGCACT < 41bp 1 0.277516368050599 1 0.121043264865875 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout|27356879;GSE66010;miCLIP;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037852 chrY:10037856 . . 0 25 hm5C_associated_SNPs_17353 0 0 1 0 0 unknown 1 0.500232043971308 1 0.999535912057384 hm5C_site_18793 DeepMRMD:1;iRNA_m5C:0.999535912057384 18794 chrY 10037856 10037856 1 + G A BRCA 10037855 + 10037835 10037875 41 TTGCAGGACACATTGATCATCGACACTTCGAACGCACTTGC TTGCAGGACACATTGATCATCAACACTTCGAACGCACTTGC < 41bp 1 0.647806351874307 1 0.376715421676636 experiment 0.704387296251385 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037855 chrY:10037856 . . 0 22 hm5C_associated_SNPs_17354 0 0 1 0 0 unknown 1 0.500231643921012 1 0.999536712157975 hm5C_site_18794 DeepMRMD:1;iRNA_m5C:0.999536712157975 18795 chrY 10037856 10037856 1 + G A BRCA 10037858 + 10037838 10037878 41 CAGGACACATTGATCATCGACACTTCGAACGCACTTGCGGC CAGGACACATTGATCATCAACACTTCGAACGCACTTGCGGC < 41bp 1 0.155455727497577 1 0.0810782909393311 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037858 chrY:10037856 . . 0 19 hm5C_associated_SNPs_17355 0 0 1 0 0 unknown 1 0.500231643224579 1 0.999536713550843 hm5C_site_18795 DeepMRMD:1;iRNA_m5C:0.999536713550843 18796 chrY 10037856 10037856 1 + G A BRCA 10037860 + 10037840 10037880 41 GGACACATTGATCATCGACACTTCGAACGCACTTGCGGCCC GGACACATTGATCATCAACACTTCGAACGCACTTGCGGCCC < 41bp 1 0.486824864514493 1 0.22209569811821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037860 chrY:10037856 . . 0 17 hm5C_associated_SNPs_17356 0 0 1 0 0 unknown 1 0.500231643940086 1 0.999536712119827 hm5C_site_18796 DeepMRMD:1;iRNA_m5C:0.999536712119827 18797 chrY 10037856 10037856 1 + G A BRCA 10037863 + 10037843 10037883 41 CACATTGATCATCGACACTTCGAACGCACTTGCGGCCCGGG CACATTGATCATCAACACTTCGAACGCACTTGCGGCCCGGG < 41bp 1 0.146642439500878 1 0.0533668398857117 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037863 chrY:10037856 . . 0 14 hm5C_associated_SNPs_17357 0 0 1 0 0 unknown 1 0.500231647670774 1 0.999536704658452 hm5C_site_18797 DeepMRMD:1;iRNA_m5C:0.999536704658452 18798 chrY 10037856 10037856 1 + G A BRCA 10037867 + 10037847 10037887 41 TTGATCATCGACACTTCGAACGCACTTGCGGCCCGGGTTCC TTGATCATCAACACTTCGAACGCACTTGCGGCCCGGGTTCC < 41bp 1 0.277756249503196 1 0.0669629275798798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037867 chrY:10037856 . . 0 10 hm5C_associated_SNPs_17358 0 0 1 0 0 unknown 1 0.50023164392123 1 0.999536712157541 hm5C_site_18798 DeepMRMD:1;iRNA_m5C:0.999536712157541 18799 chrY 10037856 10037856 1 + G A BRCA 10037869 + 10037849 10037889 41 GATCATCGACACTTCGAACGCACTTGCGGCCCGGGTTCCTC GATCATCAACACTTCGAACGCACTTGCGGCCCGGGTTCCTC < 41bp 1 0.307315728378334 1 0.0974633693695068 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037869 chrY:10037856 . . 0 8 hm5C_associated_SNPs_17359 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_18799 DeepMRMD:1;iRNA_m5C:0.999536712157815 18800 chrY 10037867 10037867 1 + C T BRCA 10037852 + 10037832 10037872 41 GAATTGCAGGACACATTGATCATCGACACTTCGAACGCACT GAATTGCAGGACACATTGATCATCGACACTTCGAATGCACT < 41bp 1 0.159240323924865 1 0.159391552209854 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout|27356879;GSE66010;miCLIP;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037852 chrY:10037867 . . 0 36 hm5C_associated_SNPs_17360 0 0 1 0 0 unknown 1 0.500542442262956 1 0.998915115474088 hm5C_site_18800 DeepMRMD:1;iRNA_m5C:0.998915115474088 18801 chrY 10037867 10037867 1 + C T BRCA 10037858 + 10037838 10037878 41 CAGGACACATTGATCATCGACACTTCGAACGCACTTGCGGC CAGGACACATTGATCATCGACACTTCGAATGCACTTGCGGC < 41bp 1 0.104057836144067 1 0.0767066478729248 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037858 chrY:10037867 . . 0 30 hm5C_associated_SNPs_17362 0 0 1 0 0 unknown 1 0.500478978753536 1 0.999042042492927 hm5C_site_18801 DeepMRMD:1;iRNA_m5C:0.999042042492927 18802 chrY 10037867 10037867 1 + C T BRCA 10037860 + 10037840 10037880 41 GGACACATTGATCATCGACACTTCGAACGCACTTGCGGCCC GGACACATTGATCATCGACACTTCGAATGCACTTGCGGCCC < 41bp 1 0.4198577299332 1 0.219381481409073 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037860 chrY:10037867 . . 0 28 hm5C_associated_SNPs_17363 0 0 1 0 0 unknown 1 0.500231643922845 1 0.99953671215431 hm5C_site_18802 DeepMRMD:1;iRNA_m5C:0.99953671215431 18803 chrY 10037867 10037867 1 + C T BRCA 10037863 + 10037843 10037883 41 CACATTGATCATCGACACTTCGAACGCACTTGCGGCCCGGG CACATTGATCATCGACACTTCGAATGCACTTGCGGCCCGGG < 41bp 1 0.242479212047145 1 0.0830055177211761 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037863 chrY:10037867 . . 0 25 hm5C_associated_SNPs_17364 0 0 1 0 0 unknown 1 0.500231189657596 1 0.999537620684808 hm5C_site_18803 DeepMRMD:1;iRNA_m5C:0.999537620684808 18804 chrY 10037867 10037867 1 + C T BRCA 10037869 + 10037849 10037889 41 GATCATCGACACTTCGAACGCACTTGCGGCCCGGGTTCCTC GATCATCGACACTTCGAATGCACTTGCGGCCCGGGTTCCTC < 41bp 1 0.32648365216863 1 0.0545448064804077 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037869 chrY:10037867 . . 0 19 hm5C_associated_SNPs_17365 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_18804 DeepMRMD:1;iRNA_m5C:0.999536712157815 18805 chrY 10037868 10037868 1 + G A BRCA 10037852 + 10037832 10037872 41 GAATTGCAGGACACATTGATCATCGACACTTCGAACGCACT GAATTGCAGGACACATTGATCATCGACACTTCGAACACACT < 41bp 1 0.176525259067439 1 0.0813249945640564 experiment 1 Functional Loss 27356879;GSE66012;miCLIP;HEK293;mutations in NSUN3|30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout|27356879;GSE66010;miCLIP;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037852 chrY:10037868 . . 0 37 hm5C_associated_SNPs_17366 0 0 1 0 0 unknown 1 0.500542479016022 1 0.998915041967956 hm5C_site_18805 DeepMRMD:1;iRNA_m5C:0.998915041967956 18806 chrY 10037868 10037868 1 + G A BRCA 10037855 + 10037835 10037875 41 TTGCAGGACACATTGATCATCGACACTTCGAACGCACTTGC TTGCAGGACACATTGATCATCGACACTTCGAACACACTTGC < 41bp 1 0.679081989922551 1 0.297398626804352 experiment 0.641836020154898 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037855 chrY:10037868 . . 0 34 hm5C_associated_SNPs_17367 0 0 1 0 0 unknown 1 0.500201139178515 1 0.999597721642971 hm5C_site_18806 DeepMRMD:1;iRNA_m5C:0.999597721642971 18807 chrY 10037868 10037868 1 + G A BRCA 10037858 + 10037838 10037878 41 CAGGACACATTGATCATCGACACTTCGAACGCACTTGCGGC CAGGACACATTGATCATCGACACTTCGAACACACTTGCGGC < 41bp 1 0.141569877559539 1 0.0604497492313385 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037858 chrY:10037868 . . 0 31 hm5C_associated_SNPs_17368 0 0 1 0 0 unknown 1 0.500479009369119 1 0.999041981261762 hm5C_site_18807 DeepMRMD:1;iRNA_m5C:0.999041981261762 18808 chrY 10037868 10037868 1 + G A BRCA 10037860 + 10037840 10037880 41 GGACACATTGATCATCGACACTTCGAACGCACTTGCGGCCC GGACACATTGATCATCGACACTTCGAACACACTTGCGGCCC < 41bp 1 0.421431701209883 1 0.281879395246506 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037860 chrY:10037868 . . 0 29 hm5C_associated_SNPs_17369 0 0 1 0 0 unknown 1 0.500231643922847 1 0.999536712154305 hm5C_site_18808 DeepMRMD:1;iRNA_m5C:0.999536712154305 18809 chrY 10037868 10037868 1 + G A BRCA 10037863 + 10037843 10037883 41 CACATTGATCATCGACACTTCGAACGCACTTGCGGCCCGGG CACATTGATCATCGACACTTCGAACACACTTGCGGCCCGGG < 41bp 1 0.13698211010712 1 0.104126513004303 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037863 chrY:10037868 . . 0 26 hm5C_associated_SNPs_17370 0 0 1 0 0 unknown 1 0.500231571141783 1 0.999536857716434 hm5C_site_18809 DeepMRMD:1;iRNA_m5C:0.999536857716434 18810 chrY 10037868 10037868 1 + G A BRCA 10037867 + 10037847 10037887 41 TTGATCATCGACACTTCGAACGCACTTGCGGCCCGGGTTCC TTGATCATCGACACTTCGAACACACTTGCGGCCCGGGTTCC < 41bp 1 0.268806918767604 1 0.0610496997833252 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037867 chrY:10037868 . . 0 22 hm5C_associated_SNPs_17371 0 0 1 0 0 unknown 1 0.500231643921085 1 0.99953671215783 hm5C_site_18810 DeepMRMD:1;iRNA_m5C:0.99953671215783 18811 chrY 10037868 10037868 1 + G A BRCA 10037869 + 10037849 10037889 41 GATCATCGACACTTCGAACGCACTTGCGGCCCGGGTTCCTC GATCATCGACACTTCGAACACACTTGCGGCCCGGGTTCCTC < 41bp 1 0.356078306469025 1 0.0790374875068665 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TTTY23;NONE ENSG00000251705 ncRNA_exonic Human rRNA chrY:10037869 chrY:10037868 . . 0 20 hm5C_associated_SNPs_17372 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_18811 DeepMRMD:1;iRNA_m5C:0.999536712157815 18812 chr20 25205861 25205861 1 + C G BRCA 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACAGAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT < 41bp 1 0.189038481096984 1 0.0313067138195038 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205861 nonsynonymous SNV 0.007 0 7 hm5C_associated_SNPs_17373 0 0 1 0 3 Endoplasmic reticulum 1 0.500231533020247 1 0.999536933959505 hm5C_site_18812 DeepMRMD:1;iRNA_m5C:0.999536933959505 18813 chr8 27369412 27369412 1 + G C BRCA 27369415 + 27369395 27369435 41 AGTGACATGAGCCATGGGTACGTGACAGTAAAGGTGAGTCA AGTGACATGAGCCATGGCTACGTGACAGTAAAGGTGAGTCA < 41bp 1 0.663881022971706 1 0.42305713891983 experiment 0.672237954056589 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27369415 chr8:27369412 synonymous SNV . 0 18 hm5C_associated_SNPs_17374 0 0 1 0 2 Cytosol 1 0.500229256927238 1 0.999541486145524 hm5C_site_18813 DeepMRMD:1;iRNA_m5C:0.999541486145524 18814 chr19 7918195 7918195 1 + G A BRCA 7918189 + 7918169 7918209 41 GAGTACGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGAT GAGTACGCAGCCATGAAGAGCAAGGAAATGGAGGAGCAGAT < 41bp 1 0.313542317351879 1 0.503418862819672 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EVI5L ENSG00000142459 CDS Human protein_coding chr19:7918189 chr19:7918195 synonymous SNV . 0 27 hm5C_associated_SNPs_17375 0 0 0 0 2 Ribosome 1 0.500231643921139 0.993162274360656 0.999536712157722 hm5C_site_18814 DeepMRMD:0.993162274360656;iRNA_m5C:0.999536712157722 18815 chr11 44129420 44129420 1 + C T BRCA 44129403 + 44129383 44129423 41 GGCATGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAA GGCATGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTTAAA < 41bp 1 0.0343155783003289 1 0.0313878655433655 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129403 chr11:44129420 nonsynonymous SNV 0.801 1 38 hm5C_associated_SNPs_17376 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_18815 DeepMRMD:1;iRNA_m5C:0.999536712157814 18816 chr11 44129420 44129420 1 + C T BRCA 44129404 + 44129384 44129424 41 GCATGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAAT GCATGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTTAAAT < 41bp 1 0.0262446903830718 1 0.078388899564743 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129404 chr11:44129420 nonsynonymous SNV 0.801 1 37 hm5C_associated_SNPs_17377 0 0 1 0 0 Endoplasmic reticulum 1 0.500232738890952 1 0.999534522218096 hm5C_site_18816 DeepMRMD:1;iRNA_m5C:0.999534522218096 18817 chr6 133783605 133783605 1 + G T BRCA 133783602 + 133783582 133783622 41 CAGACAGGACAGCCCTACAGCTTGCCCACTTACGGTATTTC CAGACAGGACAGCCCTACAGCTTTCCCACTTACGGTATTTC < 41bp 1 0.0182415150976212 1 0.041400134563446 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783602 chr6:133783605 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_17378 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18817 DeepMRMD:1;iRNA_m5C:0.999536712157815 18818 chr11 61631214 61631214 1 + C G BRCA 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CAGCCACCTGCAACGTGGAGCAGTCCTTCTTGAACGACTGG < 41bp 1 0.0320088902066517 1 0.392595916986465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631214 nonsynonymous SNV 0.997 2 32 hm5C_associated_SNPs_17379 0 0 1 0 2 Ribosome 1 0.500231604177527 1 0.999536791644946 hm5C_site_18818 DeepMRMD:1;iRNA_m5C:0.999536791644946 18819 chr8 21957342 21957342 1 + G A BRCA 21957337 + 21957317 21957357 41 CACAGACCGGCAGCCTGAAGCCCCCGGGGACAACCCCCACA CACAGACCGGCAGCCTGAAGCCCCCAGGGACAACCCCCACA < 41bp 1 0.225289452207969 1 0.0991723239421844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21957337 chr8:21957342 nonsynonymous SNV 0.001 0 26 hm5C_associated_SNPs_17380 0 0 1 0 1 chromatin 1 0.50023164392107 1 0.99953671215786 hm5C_site_18819 DeepMRMD:1;iRNA_m5C:0.99953671215786 18820 chr12 133158042 133158042 1 + T A BRCA 133158032 + 133158012 133158052 41 CTGCCCCCCCCAGGTGCCGCCCATCCTGCCTCCAACCCATT CTGCCCCCCCCAGGTGCCGCCCATCCTGCCACCAACCCATT < 41bp 1 0.0126781605764426 1 0.0515947043895721 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBRSL1 ENSG00000112787 CDS Human protein_coding chr12:133158032 chr12:133158042 nonsynonymous SNV 0.637 0 31 hm5C_associated_SNPs_17381 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18820 DeepMRMD:1;iRNA_m5C:0.999536712157815 18821 chr10 5937117 5937117 1 + G T BRCA 5937118 + 5937098 5937138 41 GAGATGCCAGAGGACGAGTGCCCACTTGCTGGTCTTCACAG GAGATGCCAGAGGACGAGTTCCCACTTGCTGGTCTTCACAG < 41bp 1 0.171705383101791 1 0.0814338326454163 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5937118 chr10:5937117 nonsynonymous SNV 0.020 0 20 hm5C_associated_SNPs_17382 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_18821 DeepMRMD:1;iRNA_m5C:0.999536712157814 18822 chr19 17887068 17887068 1 + C T BRCA 17887060 + 17887040 17887080 41 CCCACTTTGTCCACAGGGCACCATGAAACGCCATTCTTCAC CCCACTTTGTCCACAGGGCACCATGAAATGCCATTCTTCAC < 41bp 1 0.0609758623252691 1 0.0776755213737488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887060 chr19:17887068 nonsynonymous SNV 0.998 3 29 hm5C_associated_SNPs_17383 0 0 1 0 2 Cytosol 1 0.500245517694481 1 0.999508964611038 hm5C_site_18822 DeepMRMD:1;iRNA_m5C:0.999508964611038 18823 chr5 170883788 170883788 1 + C A BRCA 170883778 + 170883758 170883798 41 CACGACGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACAC CACGACGGTGACCAAGAGGTCCCGTCGGATACGGCCCACAC < 41bp 1 0.382530358146594 1 0.10641747713089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGF18 ENSG00000156427 CDS Human protein_coding chr5:170883778 chr5:170883788 synonymous SNV . 0 31 hm5C_associated_SNPs_17384 0 0 0 0 0 nucleolus 1 0.500231643960309 1 0.999536712079381 hm5C_site_18823 DeepMRMD:1;iRNA_m5C:0.999536712079381 18824 chr5 170883788 170883788 1 + C A BRCA 170883780 + 170883760 170883800 41 CGACGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACACAC CGACGGTGACCAAGAGGTCCCGTCGGATACGGCCCACACAC < 41bp 1 0.55578837403932 1 0.280962228775024 experiment 0.888423251921361 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGF18 ENSG00000156427 CDS Human protein_coding chr5:170883780 chr5:170883788 synonymous SNV . 0 29 hm5C_associated_SNPs_17385 0 0 0 0 0 nucleolus 1 0.50023164399448 1 0.99953671201104 hm5C_site_18824 DeepMRMD:1;iRNA_m5C:0.99953671201104 18825 chrX 135291482 135291482 1 + C T BRCA 135291501 + 135291481 135291521 41 TCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC TTTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC < 41bp 1 0.0726059769632559 1 0.182035952806473 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291501 chrX:135291482 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_17386 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18825 DeepMRMD:1;iRNA_m5C:0.999536712157815 18826 chrX 135291482 135291482 1 + C T BRCA 135291502 + 135291482 135291522 41 CTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC TTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC < 41bp 1 0.196377616315938 1 0.0704095959663391 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291502 chrX:135291482 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_17387 0 0 0 0 1 chromatin 1 0.500231643921909 1 0.999536712156182 hm5C_site_18826 DeepMRMD:1;iRNA_m5C:0.999536712156182 18827 chr18 34326920 34326920 1 + C G BRCA 34326923 + 34326903 34326943 41 TTCAGGTTGACTTTGATCAACTTCAGGATAATTTATGTCAG TTCAGGTTGACTTTGATGAACTTCAGGATAATTTATGTCAG < 41bp 1 0.23736019098619 1 0.062152773141861 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34326923 chr18:34326920 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_17388 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_18827 DeepMRMD:1;iRNA_m5C:0.999536712157816 18828 chr18 34289076 34289076 1 + A G BRCA 34289065 + 34289045 34289085 41 TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCGAATC TTGTCTCCACCAGCAAGTGCCGGGGATCCTGGACCCGAATC < 41bp 1 0.618708118915416 1 0.88675320148468 experiment 0.762583762169167 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289065 chr18:34289076 nonsynonymous SNV 0.045 0 32 hm5C_associated_SNPs_17389 0 0 0 0 1 exosome 1 0.500231661768354 0.22649359703064 0.999536676463292 hm5C_site_18828 DeepMRMD:0.22649359703064;iRNA_m5C:0.999536676463292 18829 chr19 49469846 49469846 1 + G A BRCA 49469831 + 49469811 49469851 41 GTTTCTAATTTCTCCCTCTTCTCTCTCAGCTCTGTGACTTC GTTTCTAATTTCTCCCTCTTCTCTCTCAGCTCTGTAACTTC < 41bp 1 0.266686386629624 1 0.206251710653305 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469831 chr19:49469846 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_17390 0 0 1 1 1 Cytosol 1 0.500231681901901 1 0.999536636196198 hm5C_site_18829 DeepMRMD:1;iRNA_m5C:0.999536636196198 18830 chr6 37447030 37447030 1 + C T BRCA 37447022 + 37447002 37447042 41 CCTCCCTGCAGACTCCATTGCCCCATTTCAGTAAGTAGCTC CCTCCCTGCAGACTCCATTGCCCCATTTTAGTAAGTAGCTC < 41bp 1 0.370540374297272 1 0.193838357925415 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37447022 chr6:37447030 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_17391 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_18830 DeepMRMD:1;iRNA_m5C:0.999536712157815 18831 chr6 37447030 37447030 1 + C T BRCA 37447023 + 37447003 37447043 41 CTCCCTGCAGACTCCATTGCCCCATTTCAGTAAGTAGCTCT CTCCCTGCAGACTCCATTGCCCCATTTTAGTAAGTAGCTCT < 41bp 1 0.0967012212294702 1 0.361104786396027 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37447023 chr6:37447030 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_17392 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920989 1 0.999536712158021 hm5C_site_18831 DeepMRMD:1;iRNA_m5C:0.999536712158021 18832 chr2 202899638 202899638 1 + G C BRCA 202899657 + 202899637 202899677 41 GGTGAAGGTGCAGTGTTCTCCCGAACTCCGCTTTTTCTTAT GCTGAAGGTGCAGTGTTCTCCCGAACTCCGCTTTTTCTTAT < 41bp 1 0.680198498773809 1 0.624996304512024 experiment 0.639603002452382 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FZD7 ENSG00000155760 CDS Human protein_coding chr2:202899657 chr2:202899638 nonsynonymous SNV 0.989 3 2 hm5C_associated_SNPs_17393 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921672 0.750007390975952 0.999536712156656 hm5C_site_18832 DeepMRMD:0.750007390975952;iRNA_m5C:0.999536712156656 18833 chr5 153760044 153760044 1 + C G BRCA 153760024 + 153760004 153760044 41 TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCG < 41bp 1 0.394752567992711 1 0.144509553909302 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760024 chr5:153760044 nonsynonymous SNV 0.970 4 41 hm5C_associated_SNPs_17394 0 0 0 0 1 Ribosome 1 0.500231643578048 1 0.999536712843904 hm5C_site_18833 DeepMRMD:1;iRNA_m5C:0.999536712843904 18834 chr7 151805352 151805352 1 + G T BRCA 151805360 + 151805340 151805380 41 AGGACGAGCGGAGGGAGCCACTGCACCAATAAAGTAAGATC AGGACGAGCGGATGGAGCCACTGCACCAATAAAGTAAGATC < 41bp 1 0.646756921042385 1 0.623843252658844 experiment 0.706486157915231 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151805360 chr7:151805352 nonsynonymous SNV 0.478 0 13 hm5C_associated_SNPs_17395 0 0 1 0 0 chromatin 1 0.500231788835413 0.752313494682312 0.999536422329174 hm5C_site_18834 DeepMRMD:0.752313494682312;iRNA_m5C:0.999536422329174 18835 chr1 230384985 230384985 1 + G A BRCA 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGATCCC < 41bp 1 0.488722458264929 1 0.152366876602173 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384985 synonymous SNV . 0 37 hm5C_associated_SNPs_17396 0 0 1 0 2 Endoplasmic reticulum 1 0.500231660103045 1 0.999536679793911 hm5C_site_18835 DeepMRMD:1;iRNA_m5C:0.999536679793911 18836 chr1 230384985 230384985 1 + G A BRCA 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGATCCCGG < 41bp 1 0.254663507110011 1 0.087754875421524 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384985 synonymous SNV . 0 35 hm5C_associated_SNPs_17397 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921103 1 0.999536712157793 hm5C_site_18836 DeepMRMD:1;iRNA_m5C:0.999536712157793 18837 chr19 13002750 13002750 1 + G C BRCA 13002759 + 13002739 13002779 41 CTGCCAGGAGAGACTCATGCCTCGCATCCTGTTGGCCAATC CTGCCAGGAGACACTCATGCCTCGCATCCTGTTGGCCAATC < 41bp 1 0.598760461342631 1 0.273668467998505 experiment 0.802479077314738 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13002759 chr19:13002750 nonsynonymous SNV 0.861 3 12 hm5C_associated_SNPs_17398 0 0 1 0 1 Ribosome 1 0.500231643987462 1 0.999536712025075 hm5C_site_18837 DeepMRMD:1;iRNA_m5C:0.999536712025075 18838 chr2 157407221 157407221 1 + A G BRCA 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAGGTGCTGGTGTCCATATTGTGATGCCTGGTTAT < 41bp 1 0.209906593310228 1 0.269917488098145 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407221 nonsynonymous SNV 0.507 2 9 hm5C_associated_SNPs_17400 0 0 1 1 1 Endoplasmic reticulum 1 0.500231643920867 1 0.999536712158267 hm5C_site_18838 DeepMRMD:1;iRNA_m5C:0.999536712158267 18839 chr12 131488811 131488811 1 + C T BRCA 131488791 + 131488771 131488811 41 CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCT < 41bp 1 0.0410808586444623 1 0.0414693653583527 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488791 chr12:131488811 stopgain 0.001 0 41 hm5C_associated_SNPs_17401 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18839 DeepMRMD:1;iRNA_m5C:0.999536712157815 18840 chr12 131488811 131488811 1 + C T BRCA 131488792 + 131488772 131488812 41 TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCTA < 41bp 1 0.229981452417687 1 0.245903998613358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488792 chr12:131488811 stopgain 0.001 0 40 hm5C_associated_SNPs_17402 0 0 1 0 1 chromatin 1 0.500231643921074 1 0.999536712157853 hm5C_site_18840 DeepMRMD:1;iRNA_m5C:0.999536712157853 18841 chr12 131488811 131488811 1 + C T BRCA 131488793 + 131488773 131488813 41 CCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAG CCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCTAG < 41bp 1 0.63732259699283 1 0.501971244812012 experiment 0.725354806014341 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488793 chr12:131488811 stopgain 0.001 0 39 hm5C_associated_SNPs_17403 0 0 1 0 1 chromatin 1 0.500231643921092 0.996057510375976 0.999536712157815 hm5C_site_18841 DeepMRMD:0.996057510375976;iRNA_m5C:0.999536712157815 18842 chr12 131488811 131488811 1 + C T BRCA 131488795 + 131488775 131488815 41 CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGAT CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCTAGAT < 41bp 1 0.472205901655178 1 0.888536214828491 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488795 chr12:131488811 stopgain 0.001 0 37 hm5C_associated_SNPs_17404 0 0 1 0 1 chromatin 1 0.500231643921092 0.222927570343018 0.999536712157815 hm5C_site_18842 DeepMRMD:0.222927570343018;iRNA_m5C:0.999536712157815 18843 chr12 131488811 131488811 1 + C T BRCA 131488799 + 131488779 131488819 41 ACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGATCCCC ACCGCTTCCCGGCCCACGGGCAGAGCTTCATCTAGATCCCC < 41bp 1 0.332222968268337 1 0.315529435873032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488799 chr12:131488811 stopgain 0.001 0 33 hm5C_associated_SNPs_17405 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18843 DeepMRMD:1;iRNA_m5C:0.999536712157815 18844 chr16 46960909 46960909 1 + G A BRCA 46960906 + 46960886 46960926 41 AGACTGGCATCTGTGTCGTGCCCGGCAGTGGCTTTGGGCAG AGACTGGCATCTGTGTCGTGCCCAGCAGTGGCTTTGGGCAG < 41bp 1 0.156044305356062 1 0.0632664561271667 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPT2 ENSG00000166123 CDS Human protein_coding chr16:46960906 chr16:46960909 nonsynonymous SNV 0.962 4 24 hm5C_associated_SNPs_17406 0 0 1 0 2 Ribosome 1 0.500231643363107 1 0.999536713273786 hm5C_site_18844 DeepMRMD:1;iRNA_m5C:0.999536713273786 18845 chr9 124062270 124062270 1 + T G BRCA 124062255 + 124062235 124062275 41 GGGGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCG GGGGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGGGCCCG < 41bp 1 0.510182453559563 1 0.659279465675354 experiment 0.979635092880874 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062255 chr9:124062270 nonsynonymous SNV 0.394 1 36 hm5C_associated_SNPs_17407 0 0 1 0 1 Cytosol 1 0.500231643921095 0.681441068649292 0.999536712157809 hm5C_site_18845 DeepMRMD:0.681441068649292;iRNA_m5C:0.999536712157809 18846 chr9 124062270 124062270 1 + T G BRCA 124062257 + 124062237 124062277 41 GGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAG GGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGGGCCCGAG < 41bp 1 0.677966509979151 1 0.726703763008118 experiment 0.644066980041698 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062257 chr9:124062270 nonsynonymous SNV 0.394 1 34 hm5C_associated_SNPs_17408 0 0 1 0 1 Cytosol 1 0.500231643921086 0.546592473983764 0.999536712157828 hm5C_site_18846 DeepMRMD:0.546592473983764;iRNA_m5C:0.999536712157828 18847 chr9 124062270 124062270 1 + T G BRCA 124062258 + 124062238 124062278 41 GGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAGG GGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGGGCCCGAGG < 41bp 1 0.48359623231842 1 0.85528039932251 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062258 chr9:124062270 nonsynonymous SNV 0.394 1 33 hm5C_associated_SNPs_17409 0 0 1 0 1 Cytosol 1 0.500231643921093 0.28943920135498 0.999536712157815 hm5C_site_18847 DeepMRMD:0.28943920135498;iRNA_m5C:0.999536712157815 18848 chr12 124144425 124144425 1 + C T BRCA 124144415 + 124144395 124144435 41 AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA AGTTCATGTTGACTACAGGGCTGCTTGCTTTTGTCATCGAA < 41bp 1 0.330876751571399 1 0.0540709793567657 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144415 chr12:124144425 synonymous SNV . 0 31 hm5C_associated_SNPs_17411 0 0 1 0 2 Cytosol 1 0.500231597578777 1 0.999536804842445 hm5C_site_18848 DeepMRMD:1;iRNA_m5C:0.999536804842445 18849 chr22 46712099 46712099 1 + G C BRCA 46712102 + 46712082 46712122 41 TTTCTGAGCTGGCAGCGGAGCAGCTCACGGCACCCCCCTCA TTTCTGAGCTGGCAGCGCAGCAGCTCACGGCACCCCCCTCA < 41bp 1 0.620876098754221 1 0.596578657627106 experiment 0.758247802491558 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46712102 chr22:46712099 nonsynonymous SNV 0.006 2 18 hm5C_associated_SNPs_17412 0 0 1 0 0 Ribosome 1 0.500231643920974 0.806842684745788 0.999536712158053 hm5C_site_18849 DeepMRMD:0.806842684745788;iRNA_m5C:0.999536712158053 18850 chr19 36104782 36104782 1 + G C BRCA 36104795 + 36104775 36104815 41 TCAAGAAGATCCGGGGAAACCTACTCTGGTAACTGCTTCTT TCAAGAACATCCGGGGAAACCTACTCTGGTAACTGCTTCTT < 41bp 1 0.452931334364951 1 0.103859066963196 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36104795 chr19:36104782 nonsynonymous SNV 0.992 1 8 hm5C_associated_SNPs_17413 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18850 DeepMRMD:1;iRNA_m5C:0.999536712157815 18851 chr7 43506115 43506115 1 + C T BRCA 43506109 + 43506089 43506129 41 AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTCATCA AATCACCTTGCTGCTGCAGTCCCCAGTGGTCAAGTTCATCA < 41bp 1 0.409355530465144 1 0.0841705501079559 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HECW1 ENSG00000002746 CDS Human protein_coding chr7:43506109 chr7:43506115 nonsynonymous SNV 0.999 5 27 hm5C_associated_SNPs_17414 0 0 0 0 2 Cytosol 1 0.500231644199375 1 0.999536711601249 hm5C_site_18851 DeepMRMD:1;iRNA_m5C:0.999536711601249 18852 chr6 27776369 27776369 1 + A T BRCA 27776384 + 27776364 27776404 41 AGGCGAAGGGCAAGTAGAAGCCTGGATTAGTTTGCAGCAAC AGGCGTAGGGCAAGTAGAAGCCTGGATTAGTTTGCAGCAAC < 41bp 1 0.476131810316929 1 0.554969131946564 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2AI ENSG00000196747 CDS Human protein_coding chr6:27776384 chr6:27776369 stopgain 0.986 1 6 hm5C_associated_SNPs_17415 0 0 1 0 0 Ribosome 1 0.500231643921793 0.890061736106872 0.999536712156414 hm5C_site_18852 DeepMRMD:0.890061736106872;iRNA_m5C:0.999536712156414 18853 chr6 27833360 27833360 1 + G C BRCA 27833344 + 27833324 27833364 41 GGAGCTGGCGGGCAACGCCGCCCGCGACAACAAGAAGACCC GGAGCTGGCGGGCAACGCCGCCCGCGACAACAAGAACACCC < 41bp 1 0.395273598783091 1 0.499826908111572 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AL ENSG00000198374 CDS Human other chr6:27833344 chr6:27833360 nonsynonymous SNV 0.997 0 37 hm5C_associated_SNPs_17416 0 0 1 0 0 exosome 1 0.500231643883006 1 0.999536712233988 hm5C_site_18853 DeepMRMD:1;iRNA_m5C:0.999536712233988 18854 chr6 27833360 27833360 1 + G C BRCA 27833345 + 27833325 27833365 41 GAGCTGGCGGGCAACGCCGCCCGCGACAACAAGAAGACCCG GAGCTGGCGGGCAACGCCGCCCGCGACAACAAGAACACCCG < 41bp 1 0.428973560100191 1 0.476895838975906 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AL ENSG00000198374 CDS Human other chr6:27833345 chr6:27833360 nonsynonymous SNV 0.997 0 36 hm5C_associated_SNPs_17417 0 0 1 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_18854 DeepMRMD:1;iRNA_m5C:0.999536712157815 18855 chr6 29910622 29910622 1 + C T BRCA 29910604 + 29910584 29910624 41 GGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACAC GGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGATAC < 41bp 1 0.633262252323583 1 0.570638537406921 experiment 0.733475495352834 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29910604 chr6:29910622 synonymous SNV . 0 39 hm5C_associated_SNPs_17418 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643852476 0.858722925186158 0.999536712295047 hm5C_site_18855 DeepMRMD:0.858722925186158;iRNA_m5C:0.999536712295047 18856 chr6 29911296 29911296 1 + G A BRCA 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACAG < 41bp 1 0.577290581541027 1 0.21406289935112 experiment 0.845418836917946 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911296 nonsynonymous SNV 0.032 3 40 hm5C_associated_SNPs_17419 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921313 1 0.999536712157373 hm5C_site_18856 DeepMRMD:1;iRNA_m5C:0.999536712157373 18857 chr6 29911296 29911296 1 + G A BRCA 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACAGG < 41bp 1 0.41097082081026 1 0.415480196475983 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911296 nonsynonymous SNV 0.032 3 39 hm5C_associated_SNPs_17420 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_18857 DeepMRMD:1;iRNA_m5C:0.999536712157815 18858 chrX 150156319 150156319 1 + A T BRCA 150156311 + 150156291 150156331 41 AAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGG AAAGGGTCCTGCTAAAGTTGCCCGGAAATAGGTGGAAGAGG < 41bp 1 0.476275197858491 1 0.0978497862815857 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156311 chrX:150156319 stopgain 0.998 0 29 hm5C_associated_SNPs_17421 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18858 DeepMRMD:1;iRNA_m5C:0.999536712157815 18859 chrX 150156319 150156319 1 + A T BRCA 150156312 + 150156292 150156332 41 AAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA AAGGGTCCTGCTAAAGTTGCCCGGAAATAGGTGGAAGAGGA < 41bp 1 0.642378466130349 1 0.618760645389557 experiment 0.715243067739302 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156312 chrX:150156319 stopgain 0.998 0 28 hm5C_associated_SNPs_17422 0 0 1 0 1 Ribosome 1 0.500231639506798 0.762478709220886 0.999536720986404 hm5C_site_18859 DeepMRMD:0.762478709220886;iRNA_m5C:0.999536720986404 18860 chrX 150156319 150156319 1 + A T BRCA 150156313 + 150156293 150156333 41 AGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA AGGGTCCTGCTAAAGTTGCCCGGAAATAGGTGGAAGAGGAA < 41bp 1 0.694855691877095 1 0.746848821640015 experiment 0.61028861624581 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156313 chrX:150156319 stopgain 0.998 0 27 hm5C_associated_SNPs_17423 0 0 1 0 1 Ribosome 1 0.500231643921092 0.50630235671997 0.999536712157815 hm5C_site_18860 DeepMRMD:0.50630235671997;iRNA_m5C:0.999536712157815 18861 chr1 26799995 26799995 1 + G A BRCA 26799987 + 26799967 26800007 41 CTTATAGGCTGAAGGGGATGCTAAGGGAGATAAAGCAAAGG CTTATAGGCTGAAGGGGATGCTAAGGGAAATAAAGCAAAGG < 41bp 1 0.437239956391955 1 0.201743572950363 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26799987 chr1:26799995 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_17424 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18861 DeepMRMD:1;iRNA_m5C:0.999536712157815 18862 chr1 26799995 26799995 1 + G A BRCA 26800015 + 26799995 26800035 41 GATAAAGCAAAGGTGAAGGACGAAGTAAGTCATTCTCTCTT AATAAAGCAAAGGTGAAGGACGAAGTAAGTCATTCTCTCTT < 41bp 1 0.553241570004637 1 0.239886492490768 experiment 0.893516859990726 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26800015 chr1:26799995 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_17425 0 0 1 0 2 Cytosol 1 0.500231643924764 1 0.999536712150472 hm5C_site_18862 DeepMRMD:1;iRNA_m5C:0.999536712150472 18863 chr19 41778020 41778020 1 + C A BRCA 41778031 + 41778011 41778051 41 GAGCACCCACCAGCTTCCTCCCGCCTGAAGCTTCTCAACTC GAGCACCCAACAGCTTCCTCCCGCCTGAAGCTTCTCAACTC < 41bp 1 0.150711287690348 1 0.103825569152832 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41778031 chr19:41778020 nonsynonymous SNV 0.940 0 10 hm5C_associated_SNPs_17426 0 0 1 0 0 Cytosol 1 0.500231643921103 1 0.999536712157793 hm5C_site_18863 DeepMRMD:1;iRNA_m5C:0.999536712157793 18864 chr19 41811663 41811663 1 + C A BRCA 41811651 + 41811631 41811671 41 CACAGCCCCACCGCCTCCACCTCCACCACCACCTGCCTACA CACAGCCCCACCGCCTCCACCTCCACCACCACATGCCTACA < 41bp 1 0.596526180412339 1 0.944892525672913 experiment 0.806947639175322 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41811651 chr19:41811663 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_17427 0 0 1 0 1 Cytosol 1 0.500231643921092 0.110214948654174 0.999536712157815 hm5C_site_18864 DeepMRMD:0.110214948654174;iRNA_m5C:0.999536712157815 18865 chr14 65007620 65007620 1 + G A BRCA 65007630 + 65007610 65007650 41 ACCTATTCGTGCGTCGGGGTCTTCCAACATGGCAAGGTGGA ACCTATTCGTACGTCGGGGTCTTCCAACATGGCAAGGTGGA < 41bp 1 0.130898743926351 1 0.0403059720993042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65007630 chr14:65007620 nonsynonymous SNV 0.964 3 11 hm5C_associated_SNPs_17429 0 0 0 0 1 Cytosol 1 0.500231643921064 1 0.999536712157872 hm5C_site_18865 DeepMRMD:1;iRNA_m5C:0.999536712157872 18866 chr14 65007625 65007625 1 + G T BRCA 65007630 + 65007610 65007650 41 ACCTATTCGTGCGTCGGGGTCTTCCAACATGGCAAGGTGGA ACCTATTCGTGCGTCTGGGTCTTCCAACATGGCAAGGTGGA < 41bp 1 0.135314327943126 1 0.0899165868759155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65007630 chr14:65007625 nonsynonymous SNV 0.956 3 16 hm5C_associated_SNPs_17430 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_18866 DeepMRMD:1;iRNA_m5C:0.999536712157815 18867 chrX 135593186 135593186 1 + G A BRCA 135593205 + 135593185 135593225 41 TGAGAAGAAGTTTGAAAAGACAGAAGATGGGGGAGAATTTG TAAGAAGAAGTTTGAAAAGACAGAAGATGGGGGAGAATTTG < 41bp 1 0.659011152513965 1 0.328757762908936 experiment 0.681977694972071 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593205 chrX:135593186 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_17431 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18867 DeepMRMD:1;iRNA_m5C:0.999536712157815 18868 chr4 8294069 8294069 1 + C T BRCA 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTACGGGAACTCCGGGGGACCATTGGTGAACCTGGTAAGTG < 41bp 1 0.177285280154609 1 0.15670308470726 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294069 synonymous SNV . 0 23 hm5C_associated_SNPs_17432 0 0 0 0 2 exosome 1 0.500231828391839 1 0.999536343216323 hm5C_site_18868 DeepMRMD:1;iRNA_m5C:0.999536343216323 18869 chr4 3224137 3224137 1 + G A BRCA 3224157 + 3224137 3224177 41 GAAGAAACTTGGGCCACCCTCCTTGGTGTCCTGGTGACGCA AAAGAAACTTGGGCCACCCTCCTTGGTGTCCTGGTGACGCA < 41bp 1 0.067389694649575 1 0.453809022903442 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3224157 chr4:3224137 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_17433 0 0 1 0 2 Cytosol 1 0.500231642817995 1 0.99953671436401 hm5C_site_18869 DeepMRMD:1;iRNA_m5C:0.99953671436401 18870 chr17 73745040 73745040 1 + G A BRCA 73745021 + 73745001 73745041 41 TGCAAGAAGTTGACTCCCTCCTGCGGGGCCGCCAGGTCCGC TGCAAGAAGTTGACTCCCTCCTGCGGGGCCGCCAGGTCCAC < 41bp 1 0.626265041433188 1 0.902369737625122 experiment 0.747469917133624 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73745021 chr17:73745040 nonsynonymous SNV 0.825 3 40 hm5C_associated_SNPs_17434 0 0 0 0 1 Cytosol 1 0.50023164361777 0.195260524749756 0.999536712764459 hm5C_site_18870 DeepMRMD:0.195260524749756;iRNA_m5C:0.999536712764459 18871 chr3 4774890 4774890 1 + A G BRCA 4774884 + 4774864 4774904 41 CCCACTGTCAGCAGGAGGACCCGGCAAGCCCGGGGGAGGAG CCCACTGTCAGCAGGAGGACCCGGCAGGCCCGGGGGAGGAG < 41bp 1 0.131584802821354 1 0.422132074832916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4774884 chr3:4774890 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_17435 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_18871 DeepMRMD:1;iRNA_m5C:0.999536712157815 18872 chr6 15496730 15496730 1 + G A BRCA 15496746 + 15496726 15496766 41 GGGCGGCAGCTGCGGGAGGGCCTGCAGCTGCGGGAGGGGCT GGGCAGCAGCTGCGGGAGGGCCTGCAGCTGCGGGAGGGGCT < 41bp 1 0.0720560958145911 1 0.227693915367126 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15496746 chr6:15496730 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_17436 0 0 1 0 0 Cytosol 1 0.500231629137241 1 0.999536741725517 hm5C_site_18872 DeepMRMD:1;iRNA_m5C:0.999536741725517 18873 chr1 215785242 215785242 1 + G C BRCA 215785244 + 215785224 215785264 41 CCAACAAACTATTTGTAAGACTCTCATCGACTGGAAAAAGG CCAACAAACTATTTGTAACACTCTCATCGACTGGAAAAAGG < 41bp 1 0.128692223493742 1 0.0511167049407959 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215785244 chr1:215785242 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_17437 0 0 1 0 2 Ribosome 1 0.500231660486217 1 0.999536679027567 hm5C_site_18873 DeepMRMD:1;iRNA_m5C:0.999536679027567 18874 chr17 7750214 7750214 1 + A C BRCA 7750209 + 7750189 7750229 41 CACCACCACCACCACCACCACCACCACCCCTGCCTGGCCTG CACCACCACCACCACCACCACCACCCCCCCTGCCTGGCCTG < 41bp 1 0.0295644611161399 1 0.301009237766266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750209 chr17:7750214 synonymous SNV . 0 26 hm5C_associated_SNPs_17438 0 0 1 0 1 Cytosol 1 0.500231643921256 1 0.999536712157488 hm5C_site_18874 DeepMRMD:1;iRNA_m5C:0.999536712157488 18875 chr17 7750214 7750214 1 + A C BRCA 7750213 + 7750193 7750233 41 ACCACCACCACCACCACCACCACCCCTGCCTGGCCTGGCTA ACCACCACCACCACCACCACCCCCCCTGCCTGGCCTGGCTA < 41bp 1 0.0402060830634114 1 0.341668754816055 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750213 chr17:7750214 synonymous SNV . 0 22 hm5C_associated_SNPs_17439 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18875 DeepMRMD:1;iRNA_m5C:0.999536712157815 18876 chr17 73486391 73486391 1 + G T BRCA 73486373 + 73486353 73486393 41 AGTCCTCTGGGTTCTGGCAACTGCCTGTGGAGAGGCCCGTG AGTCCTCTGGGTTCTGGCAACTGCCTGTGGAGAGGCCCTTG < 41bp 1 0.452969301389189 1 0.095396876335144 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73486373 chr17:73486391 nonsynonymous SNV 0.996 2 39 hm5C_associated_SNPs_17440 0 0 1 0 2 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_18876 DeepMRMD:1;iRNA_m5C:0.99953671215782 18877 chr14 70175690 70175690 1 + T G BRCA 70175681 + 70175661 70175701 41 GGGCTCTCGGGCCTCAGAGACTGTGATGGTGCATCAGGCAA GGGCTCTCGGGCCTCAGAGACTGTGATGGGGCATCAGGCAA < 41bp 1 0.528851437020151 1 0.125491887331009 experiment 0.942297125959698 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SUSD6 ENSG00000100647 CDS Human protein_coding chr14:70175681 chr14:70175690 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_17441 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921097 1 0.999536712157807 hm5C_site_18877 DeepMRMD:1;iRNA_m5C:0.999536712157807 18878 chr18 46284669 46284669 1 + G C BRCA 46284660 + 46284640 46284680 41 CCCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGT CCCCACAGCAGTCAGGGGGGCCAGAGGTTCAGACAAAACGT < 41bp 1 0.274554416742568 1 0.447457760572433 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284660 chr18:46284669 nonsynonymous SNV 0.377 2 30 hm5C_associated_SNPs_17442 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18878 DeepMRMD:1;iRNA_m5C:0.999536712157815 18879 chr18 46284669 46284669 1 + G C BRCA 46284661 + 46284641 46284681 41 CCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGTA CCCACAGCAGTCAGGGGGGCCAGAGGTTCAGACAAAACGTA < 41bp 1 0.308472238542531 1 0.634835541248322 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284661 chr18:46284669 nonsynonymous SNV 0.377 2 29 hm5C_associated_SNPs_17443 0 0 0 0 0 Cytosol 1 0.500231643922184 0.730328917503356 0.999536712155632 hm5C_site_18879 DeepMRMD:0.730328917503356;iRNA_m5C:0.999536712155632 18880 chr5 5464629 5464629 1 + C T BRCA 5464638 + 5464618 5464658 41 CACTTCCTGTGCCTGGCCGACTCCCACCCTGTGCATCTGGC CACTTCCTGTGTCTGGCCGACTCCCACCCTGTGCATCTGGC < 41bp 1 0.118563535515594 1 0.275304079055786 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ICE1 ENSG00000164151 CDS Human protein_coding chr5:5464638 chr5:5464629 nonsynonymous SNV 0.996 3 12 hm5C_associated_SNPs_17444 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18880 DeepMRMD:1;iRNA_m5C:0.999536712157815 18881 chr19 7682695 7682695 1 + C T BRCA 7682691 + 7682671 7682711 41 ATCCTCTTTCGCGACTCGAGCTGCCAGTTCCGGGCGCTCTA ATCCTCTTTCGCGACTCGAGCTGCTAGTTCCGGGCGCTCTA < 41bp 1 0.306264446630311 1 0.0687890648841858 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682691 chr19:7682695 stopgain 1.000 1 25 hm5C_associated_SNPs_17445 0 0 0 0 1 nucleus 1 0.500231643921099 1 0.999536712157801 hm5C_site_18881 DeepMRMD:1;iRNA_m5C:0.999536712157801 18882 chr1 10332316 10332316 1 + T C BRCA 10332306 + 10332286 10332326 41 GTATTTATTTTAGGAAGGAGCAAATATTAATAAGTCTCTTA GTATTTATTTTAGGAAGGAGCAAATATTAACAAGTCTCTTA < 41bp 1 0.0472626342761648 1 0.186384111642838 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10332306 chr1:10332316 synonymous SNV . 0 31 hm5C_associated_SNPs_17446 0 0 1 1 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18882 DeepMRMD:1;iRNA_m5C:0.999536712157815 18883 chr1 10412697 10412697 1 + C T BRCA 10412691 + 10412671 10412711 41 TTTTATCCTTTCTTTTAGGTCGTATTCGGAATAAGCCTGAG TTTTATCCTTTCTTTTAGGTCGTATTTGGAATAAGCCTGAG < 41bp 1 0.0709441734643508 1 0.109027504920959 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10412691 chr1:10412697 nonsynonymous SNV 0.994 4 27 hm5C_associated_SNPs_17447 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18883 DeepMRMD:1;iRNA_m5C:0.999536712157815 18884 chrX 69639610 69639610 1 + G A BRCA 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGGATTGAGCTTCTTTAATCCCATCTGTGCCACCCCCAAT < 41bp 1 0.203813442229292 1 0.0965136587619781 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639610 nonsynonymous SNV 0.910 0 24 hm5C_associated_SNPs_17448 0 0 1 0 2 chromatin 1 0.500231643893392 1 0.999536712213215 hm5C_site_18884 DeepMRMD:1;iRNA_m5C:0.999536712213215 18885 chrX 69639547 69639547 1 + G A BRCA 69639552 + 69639532 69639572 41 CGGACCCAGGATTCCGAAGGCTCCTTCAAACTGGAGGATCC CGGACCCAGGATTCCAAAGGCTCCTTCAAACTGGAGGATCC < 41bp 1 0.317761044762542 1 0.330311328172684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639552 chrX:69639547 nonsynonymous SNV 0.994 1 16 hm5C_associated_SNPs_17449 0 0 0 0 2 chromatin 1 0.500231643921221 1 0.999536712157559 hm5C_site_18885 DeepMRMD:1;iRNA_m5C:0.999536712157559 18886 chr6 42986630 42986630 1 + A C BRCA 42986648 + 42986628 42986668 41 CGAAGGGGAAGGGGCCATGTCCCCGCCGGCGCCAGTGCTGC CGCAGGGGAAGGGGCCATGTCCCCGCCGGCGCCAGTGCTGC < 41bp 1 0.515698537302999 1 0.6257603764534 experiment 0.968602925394001 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42986648 chr6:42986630 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_17450 0 0 1 0 1 Ribosome 1 0.500231645054232 0.7484792470932 0.999536709891535 hm5C_site_18886 DeepMRMD:0.7484792470932;iRNA_m5C:0.999536709891535 18887 chr12 53343222 53343222 1 + G A BRCA 53343242 - 53343222 53343262 41 TCCAGGCTCCTCACTCTGTCCAGGTAAGAGGCCAGGCGGTC TCCAGGCTCCTCACTCTGTCCAGGTAAGAGGCCAGGCGGTT < 41bp 1 0.618396346905892 1 0.829068899154663 experiment 0.763207306188215 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53343242 chr12:53343222 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_17453 0 0 1 0 0 Cytosol 1 0.500231643921092 0.341862201690674 0.999536712157815 hm5C_site_18887 DeepMRMD:0.341862201690674;iRNA_m5C:0.999536712157815 18888 chr12 52631316 52631316 1 + G A BRCA 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAAGATGAAATTAACCACCACACAGCTGCTGAGAA < 41bp 1 0.0719156459633295 1 0.0420572459697723 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631316 nonsynonymous SNV 0.182 3 26 hm5C_associated_SNPs_17454 0 0 0 0 2 Cytosol 1 0.500231643921016 1 0.999536712157967 hm5C_site_18888 DeepMRMD:1;iRNA_m5C:0.999536712157967 18889 chr12 52631316 52631316 1 + G A BRCA 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAAGATGAAATTAACCACCACACAGCTGCTGAGAATGA < 41bp 1 0.144451404249852 1 0.0768254399299622 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631316 nonsynonymous SNV 0.182 3 23 hm5C_associated_SNPs_17456 0 0 0 0 2 Cytosol 1 0.500251324619336 1 0.999497350761328 hm5C_site_18889 DeepMRMD:1;iRNA_m5C:0.999497350761328 18890 chr12 52631316 52631316 1 + G A BRCA 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAAGATGAAATTAACCACCACACAGCTGCTGAGAATGAG < 41bp 1 0.119547796315359 1 0.0703204870223999 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631316 nonsynonymous SNV 0.182 3 22 hm5C_associated_SNPs_17457 0 0 0 0 2 Cytosol 1 0.500231839999354 1 0.999536320001293 hm5C_site_18890 DeepMRMD:1;iRNA_m5C:0.999536320001293 18891 chr12 52636898 52636898 1 + G C BRCA 52636909 + 52636889 52636929 41 CTGCAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACA CTGCAGGCTCAGATCGACAACATCAAGAACCAGGTGGGACA < 41bp 1 0.34266245481721 1 0.0366370975971222 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636909 chr12:52636898 nonsynonymous SNV 0.977 3 10 hm5C_associated_SNPs_17458 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18891 DeepMRMD:1;iRNA_m5C:0.999536712157815 18892 chr12 52636898 52636898 1 + G C BRCA 52636912 + 52636892 52636932 41 CAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACAAGT CAGGCTCAGATCGACAACATCAAGAACCAGGTGGGACAAGT < 41bp 1 0.658685475419205 1 0.30838143825531 experiment 0.682629049161591 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636912 chr12:52636898 nonsynonymous SNV 0.977 3 7 hm5C_associated_SNPs_17459 0 0 1 0 1 Cytosol 1 0.500231643945419 1 0.999536712109163 hm5C_site_18892 DeepMRMD:1;iRNA_m5C:0.999536712109163 18893 chr12 52636898 52636898 1 + G C BRCA 52636918 + 52636898 52636938 41 GAGATCGACAACATCAAGAACCAGGTGGGACAAGTCCTCCT CAGATCGACAACATCAAGAACCAGGTGGGACAAGTCCTCCT < 41bp 1 0.277635788227196 1 0.455006629228592 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636918 chr12:52636898 nonsynonymous SNV 0.977 3 1 hm5C_associated_SNPs_17460 0 0 1 0 1 Cytosol 1 0.500231643750452 1 0.999536712499097 hm5C_site_18893 DeepMRMD:1;iRNA_m5C:0.999536712499097 18894 chr6 130381217 130381217 1 + G T BRCA 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAATTTGGCATGAAATTAGAAGGCGTGGA < 41bp 1 0.492256861268565 1 0.313899606466293 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381217 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_17461 0 0 1 0 2 nucleoplasm 1 0.500231643921096 1 0.999536712157808 hm5C_site_18894 DeepMRMD:1;iRNA_m5C:0.999536712157808 18895 chr1 183094653 183094653 1 + C G BRCA 183094656 + 183094636 183094676 41 GCTTGTGACCCTGGATTCTACAATCTGCAGAGTGGGCAAGG GCTTGTGACCCTGGATTGTACAATCTGCAGAGTGGGCAAGG < 41bp 1 0.166891105479072 1 0.0543555617332458 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183094656 chr1:183094653 nonsynonymous SNV 0.973 2 18 hm5C_associated_SNPs_17462 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18895 DeepMRMD:1;iRNA_m5C:0.999536712157815 18896 chr1 87805767 87805767 1 + C T BRCA 87805775 + 87805755 87805795 41 ATCGCCTGGTCCCGGGAGATCGGTTTCACTACATCAATGGC ATCGCCTGGTCCTGGGAGATCGGTTTCACTACATCAATGGC < 41bp 1 0.375833162587807 1 0.361926257610321 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMO4 ENSG00000143013 CDS Human protein_coding chr1:87805775 chr1:87805767 nonsynonymous SNV 0.999 4 13 hm5C_associated_SNPs_17463 0 0 1 0 0 Ribosome 1 0.500231643884219 1 0.999536712231563 hm5C_site_18896 DeepMRMD:1;iRNA_m5C:0.999536712231563 18897 chr19 4793216 4793216 1 + C T BRCA 4793215 + 4793195 4793235 41 CTACGTGCTTCAGGACCGGGCCGCCAAAGGCAGCCTGGGCA CTACGTGCTTCAGGACCGGGCTGCCAAAGGCAGCCTGGGCA < 41bp 1 0.224681517806304 1 0.0790301859378815 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FEM1A ENSG00000141965 CDS Human protein_coding chr19:4793215 chr19:4793216 synonymous SNV . 0 22 hm5C_associated_SNPs_17464 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18897 DeepMRMD:1;iRNA_m5C:0.999536712157815 18898 chr7 5644991 5644991 1 + C T BRCA 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGTGACTA < 41bp 1 0.206772892040934 1 0.100811064243317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644991 synonymous SNV . 0 36 hm5C_associated_SNPs_17465 0 0 1 0 1 Ribosome 1 0.500231713832517 1 0.999536572334966 hm5C_site_18898 DeepMRMD:1;iRNA_m5C:0.999536572334966 18899 chr3 66431242 66431242 1 + C T BRCA 66431223 - 66431203 66431243 41 TGGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGCCT TAGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGCCT < 41bp 1 0.199321661622229 1 0.139126569032669 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66431223 chr3:66431242 synonymous SNV . 0 2 hm5C_associated_SNPs_17466 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18899 DeepMRMD:1;iRNA_m5C:0.999536712157815 18900 chr12 57599437 57599437 1 + C T BRCA 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGATGC < 41bp 1 0.223762391192918 1 0.187185674905777 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599437 nonsynonymous SNV 0.997 2 39 hm5C_associated_SNPs_17467 0 0 0 0 2 Exosome 1 0.500231643919545 1 0.99953671216091 hm5C_site_18900 DeepMRMD:1;iRNA_m5C:0.99953671216091 18901 chr12 7019087 7019087 1 + G C BRCA 7019093 + 7019073 7019113 41 AGGTGGAAGGCTTGGAGGATCTGAGCAATCTCACCACCTTG AGGTGGAAGGCTTGCAGGATCTGAGCAATCTCACCACCTTG < 41bp 1 0.672716480745004 1 0.0573683679103851 experiment 0.654567038509992 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7019093 chr12:7019087 nonsynonymous SNV 0.892 3 15 hm5C_associated_SNPs_17468 0 0 0 0 1 Cytosol 1 0.500231643922537 1 0.999536712154926 hm5C_site_18901 DeepMRMD:1;iRNA_m5C:0.999536712154926 18902 chr2 238664814 238664814 1 + G C BRCA 238664803 + 238664783 238664823 41 TTTGCTGAAGTCAAGGAGGCCCTGAAGCAAAGAGAGGAAAT TTTGCTGAAGTCAAGGAGGCCCTGAAGCAAACAGAGGAAAT < 41bp 1 0.143405654014289 1 0.0940294861793518 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238664803 chr2:238664814 nonsynonymous SNV 0.999 2 32 hm5C_associated_SNPs_17469 0 0 1 0 2 Ribosome 1 0.50023164392109 1 0.999536712157821 hm5C_site_18902 DeepMRMD:1;iRNA_m5C:0.999536712157821 18903 chr7 139094326 139094326 1 + G C BRCA 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTCGTAGCTGAGAACCAGGAGAAAAGAA < 41bp 1 0.456820430959303 1 0.335685014724731 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094326 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_17471 0 0 1 0 2 unknown 1 0.500231643914397 1 0.999536712171206 hm5C_site_18903 DeepMRMD:1;iRNA_m5C:0.999536712171206 18904 chr7 139094326 139094326 1 + G C BRCA 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG GAGAACCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG < 41bp 1 0.455979201546698 1 0.407691299915314 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094326 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_17472 0 0 1 0 2 unknown 1 0.500231643921101 1 0.999536712157798 hm5C_site_18904 DeepMRMD:1;iRNA_m5C:0.999536712157798 18905 chr7 139094321 139094321 1 + G A BRCA 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTCGTAGCTAAGAAGCAGGAGAAAAGAA < 41bp 1 0.347977673558233 1 0.137699246406555 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094321 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_17473 0 0 1 0 2 unknown 1 0.500231714884507 1 0.999536570230986 hm5C_site_18905 DeepMRMD:1;iRNA_m5C:0.999536570230986 18906 chr7 139094321 139094321 1 + G A BRCA 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG AAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG < 41bp 1 0.474426312067298 1 0.436141610145569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094321 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_17474 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_18906 DeepMRMD:1;iRNA_m5C:0.999536712157815 18907 chr10 102763412 102763412 1 + C T BRCA 102763411 + 102763391 102763431 41 TGACGCAGCTGTTTGGGGGCCCTGCCTCCTCCTCCTCCTCT TGACGCAGCTGTTTGGGGGCCTTGCCTCCTCCTCCTCCTCT < 41bp 1 0.125523269885337 1 0.0525825619697571 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102763411 chr10:102763412 nonsynonymous SNV 0.989 2 22 hm5C_associated_SNPs_17475 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18907 DeepMRMD:1;iRNA_m5C:0.999536712157815 18908 chr1 39888058 39888058 1 + G C BRCA 39888071 + 39888051 39888091 41 TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGC TCAGAAACAACAAGTGGATCCTCTTCAGATGAAATTGCAGC < 41bp 1 0.0260018723405565 1 0.196841895580292 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39888071 chr1:39888058 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_17476 0 0 1 0 1 Endoplasmic reticulum 1 0.500389202166694 1 0.999221595666612 hm5C_site_18908 DeepMRMD:1;iRNA_m5C:0.999221595666612 18909 chr11 65268662 65268662 1 + G A BRCA 65268671 + 65268651 65268691 41 TGTAGAGTTTGGATGTGTAACTGAGGCGGGGGGGAGTTTTC TGTAGAGTTTGAATGTGTAACTGAGGCGGGGGGGAGTTTTC < 41bp 1 0.662206637049908 1 0.342519581317902 experiment 0.675586725900184 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268671 chr11:65268662 . . 0 12 hm5C_associated_SNPs_17477 0 0 1 0 0 unknown 1 0.500231644074065 1 0.999536711851871 hm5C_site_18909 DeepMRMD:1;iRNA_m5C:0.999536711851871 18910 chr11 65273176 65273176 1 + G A BRCA 65273168 + 65273148 65273188 41 GAGGTCTTTGGTGGGTTGAACTATGTTAGAAAAGGCCATTA GAGGTCTTTGGTGGGTTGAACTATGTTAAAAAAGGCCATTA < 41bp 1 0.591157699699904 1 0.312517106533051 experiment 0.817684600600193 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273168 chr11:65273176 . . 0 29 hm5C_associated_SNPs_17478 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_18910 DeepMRMD:1;iRNA_m5C:0.999536712157815 18911 chr17 12028665 12028665 1 + G T BRCA 12028682 + 12028662 12028702 41 GATGTCTGGAGTTTGGGGATCACATTGGTATGTTTATGCTG GATTTCTGGAGTTTGGGGATCACATTGGTATGTTTATGCTG < 41bp 1 0.427038877043877 1 0.119916349649429 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028682 chr17:12028665 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_17479 0 0 1 0 2 chromatin 1 0.500287967156988 1 0.999424065686025 hm5C_site_18911 DeepMRMD:1;iRNA_m5C:0.999424065686025 18912 chr5 56183211 56183211 1 + A G BRCA 56183208 + 56183188 56183228 41 GCTGTGTTTGTTGACAGGTGCCAATTTGCTAATTGACAGCA GCTGTGTTTGTTGACAGGTGCCAGTTTGCTAATTGACAGCA < 41bp 1 0.0776810388377796 1 0.132865458726883 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP3K1 ENSG00000095015 CDS Human protein_coding chr5:56183208 chr5:56183211 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_17480 0 0 0 0 1 Cytosol 1 0.50023164638624 1 0.99953670722752 hm5C_site_18912 DeepMRMD:1;iRNA_m5C:0.99953670722752 18913 chr19 40711935 40711935 1 + C T BRCA 40711941 + 40711921 40711961 41 TGGACATCGTGGAACGGGAGCTGCACCTGCTCATGTGCCAG TGGACATCGTGGAATGGGAGCTGCACCTGCTCATGTGCCAG < 41bp 1 0.384010064004797 1 0.195417791604996 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40711941 chr19:40711935 nonsynonymous SNV 0.992 3 15 hm5C_associated_SNPs_17481 0 0 1 0 0 Endoplasmic reticulum 1 0.500226955382236 1 0.999546089235528 hm5C_site_18913 DeepMRMD:1;iRNA_m5C:0.999546089235528 18914 chr18 48190626 48190626 1 + G A BRCA 48190637 + 48190617 48190657 41 AAGTTCAGCGTGGCGTACATCGTCCAGGAGTACATGGAGAC AAGTTCAGCATGGCGTACATCGTCCAGGAGTACATGGAGAC < 41bp 1 0.150651589016235 1 0.0801269114017487 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48190637 chr18:48190626 nonsynonymous SNV 0.986 0 10 hm5C_associated_SNPs_17482 0 0 0 0 0 exosome 1 0.500251244381465 1 0.999497511237069 hm5C_site_18914 DeepMRMD:1;iRNA_m5C:0.999497511237069 18915 chr16 1793389 1793389 1 + G C BRCA 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACC < 41bp 1 0.172040200897133 1 0.125252962112427 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793389 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_17483 0 0 1 0 3 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_18915 DeepMRMD:1;iRNA_m5C:0.999536712157815 18916 chr19 18254639 18254639 1 + C T BRCA 18254659 + 18254639 18254679 41 CAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC TAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC < 41bp 1 0.0148217165256762 1 0.0152736604213715 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18254659 chr19:18254639 synonymous SNV . 0 1 hm5C_associated_SNPs_17485 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18916 DeepMRMD:1;iRNA_m5C:0.999536712157815 18917 chr19 7589918 7589918 1 + C A BRCA 7589936 + 7589916 7589956 41 CACCCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC CAACCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC < 41bp 1 0.328947612262314 1 0.150295585393906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589936 chr19:7589918 nonsynonymous SNV 0.590 1 3 hm5C_associated_SNPs_17486 0 0 1 0 1 chromatin 1 0.500232405745116 1 0.999535188509767 hm5C_site_18917 DeepMRMD:1;iRNA_m5C:0.999535188509767 18918 chr16 21636383 21636383 1 + G C BRCA 21636393 + 21636373 21636413 41 GAGCCAACTAGAGGCAGGGTCATCCTTGCCCTTGTCCTCCC GAGCCAACTACAGGCAGGGTCATCCTTGCCCTTGTCCTCCC < 41bp 1 0.324243094660515 1 0.0936958491802216 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL9 ENSG00000197006 CDS Human protein_coding chr16:21636393 chr16:21636383 nonsynonymous SNV 0.995 1 11 hm5C_associated_SNPs_17487 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18918 DeepMRMD:1;iRNA_m5C:0.999536712157815 18919 chr18 19348649 19348649 1 + G C BRCA 19348668 + 19348648 19348688 41 AGAGTGGTGCGAGGAGTGGACTGGCAGTGGGAAGATCAAGA ACAGTGGTGCGAGGAGTGGACTGGCAGTGGGAAGATCAAGA < 41bp 1 0.616580080322154 1 0.102976202964783 experiment 0.766839839355692 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIB1 ENSG00000101752 CDS Human protein_coding chr18:19348668 chr18:19348649 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_17489 0 0 1 0 1 Nucleus 1 0.500231645834079 1 0.999536708331843 hm5C_site_18919 DeepMRMD:1;iRNA_m5C:0.999536708331843 18920 chr2 177015045 177015045 1 + G A BRCA 177015059 + 177015039 177015079 41 TGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTG TGTAACATTGTCTATATATACCCTGTAGAACCGAATTTGTG < 41bp 1 0.344731426783495 1 0.0403048694133759 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015059 chr2:177015045 . . 0 7 hm5C_associated_SNPs_17490 0 0 1 0 0 unknown 1 0.50023164397654 1 0.999536712046919 hm5C_site_18920 DeepMRMD:1;iRNA_m5C:0.999536712046919 18921 chr2 177015045 177015045 1 + G A BRCA 177015060 + 177015040 177015080 41 GTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGT GTAACATTGTCTATATATACCCTGTAGAACCGAATTTGTGT < 41bp 1 0.146382914599354 1 0.0478179156780243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015060 chr2:177015045 . . 0 6 hm5C_associated_SNPs_17491 0 0 1 0 0 unknown 1 0.500231958315454 1 0.999536083369092 hm5C_site_18921 DeepMRMD:1;iRNA_m5C:0.999536083369092 18922 chr11 118344572 118344572 1 + C T BRCA 118344564 + 118344544 118344584 41 AGAGAAAAGGAAAAAGGGATCAGAAATTCAGAGTAGTTCTG AGAGAAAAGGAAAAAGGGATCAGAAATTTAGAGTAGTTCTG < 41bp 1 0.322625020026133 1 0.497882485389709 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118344564 chr11:118344572 stopgain 1.000 0 29 hm5C_associated_SNPs_17492 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_18922 DeepMRMD:1;iRNA_m5C:0.999536712157815 18923 chr14 61285489 61285489 1 + G C BRCA 61285479 + 61285459 61285499 41 TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATCTACCCAA TTGCTCTGCTTTTGGCTCAGCATAAAGATACATCTACCCAA < 41bp 1 0.374627291067932 1 0.204456686973572 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61285479 chr14:61285489 nonsynonymous SNV 0.879 1 31 hm5C_associated_SNPs_17493 0 0 1 0 2 Ribosome 1 0.500129796959343 1 0.999740406081313 hm5C_site_18923 DeepMRMD:1;iRNA_m5C:0.999740406081313 18924 chr15 75190052 75190052 1 + G A BRCA 75190039 + 75190019 75190059 41 AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCCTGC AGCTTACTGAGCCGAAGGACCTGCTGATATTCCATGCCTGC < 41bp 1 0.577445493032693 1 0.183769911527634 experiment 0.845109013934614 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPI ENSG00000178802 CDS Human protein_coding chr15:75190039 chr15:75190052 nonsynonymous SNV 0.996 5 34 hm5C_associated_SNPs_17494 1 0 1 3 0 Ribosome 1 0.500231642388918 1 0.999536715222164 hm5C_site_18924 DeepMRMD:1;iRNA_m5C:0.999536715222164 Congenital disorder of glycosylation type 1B Congenital disorder of glycosylation type 1B 18925 chr16 816661 816661 1 + C T BRCA 816657 + 816637 816677 41 CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCC CCACAAGGCTCCTCGGCGGCCCCTTCCACAGGTGGCCACCC < 41bp 1 0.0257426415241167 1 0.0704742074012756 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816657 chr16:816661 synonymous SNV . 0 25 hm5C_associated_SNPs_17495 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18925 DeepMRMD:1;iRNA_m5C:0.999536712157815 18926 chr16 816661 816661 1 + C T BRCA 816658 + 816638 816678 41 CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCCT CACAAGGCTCCTCGGCGGCCCCTTCCACAGGTGGCCACCCT < 41bp 1 0.00503872241282694 1 0.0803464353084564 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816658 chr16:816661 synonymous SNV . 0 24 hm5C_associated_SNPs_17496 0 0 0 0 1 nucleus 1 0.500231643921627 1 0.999536712156746 hm5C_site_18926 DeepMRMD:1;iRNA_m5C:0.999536712156746 18927 chr11 1254384 1254384 1 + C T BRCA 1254403 + 1254383 1254423 41 GCGGGCACCTTCCTCAATGACGCGGGCGCCTGTGTGCCCGC GTGGGCACCTTCCTCAATGACGCGGGCGCCTGTGTGCCCGC < 41bp 1 0.563427083473359 1 0.909178793430328 experiment 0.873145833053282 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout MUC5B ENSG00000117983 CDS Human protein_coding chr11:1254403 chr11:1254384 nonsynonymous SNV 0.013 1 2 hm5C_associated_SNPs_17497 0 0 0 0 0 Endoplasmic reticulum 1 0.500231652286541 0.181642413139344 0.999536695426919 hm5C_site_18927 DeepMRMD:0.181642413139344;iRNA_m5C:0.999536695426919 18928 chr19 50753926 50753926 1 + T C BRCA 50753921 + 50753901 50753941 41 CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCGGG CTGCGGGATCAGGCCGACTTCAGTGCTCTCCACTACGCGGG < 41bp 1 0.608654158200303 1 0.708989262580872 experiment 0.782691683599394 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753921 chr19:50753926 nonsynonymous SNV 0.987 1 26 hm5C_associated_SNPs_17499 0 0 0 0 1 cytosol 1 0.500231643921107 0.582021474838256 0.999536712157787 hm5C_site_18928 DeepMRMD:0.582021474838256;iRNA_m5C:0.999536712157787 18929 chr3 47041682 47041682 1 + G C BRCA 47041673 + 47041653 47041693 41 CCTTTGACCTGGGCCTGGAACGGTCTAGTGTAGGATCAGGC CCTTTGACCTGGGCCTGGAACGGTCTAGTCTAGGATCAGGC < 41bp 1 0.120541933511554 1 0.686111867427826 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041673 chr3:47041682 nonsynonymous SNV 0.259 0 30 hm5C_associated_SNPs_17500 0 0 1 0 0 Nucleus 1 0.500231643921092 0.627776265144348 0.999536712157815 hm5C_site_18929 DeepMRMD:0.627776265144348;iRNA_m5C:0.999536712157815 18930 chr12 6637440 6637440 1 + T C BRCA 6637450 + 6637430 6637470 41 ACTGGGGATCTGGCCATCCGCTTTCCCAATCTGGTGGACCC ACTGGGGATCCGGCCATCCGCTTTCCCAATCTGGTGGACCC < 41bp 1 0.0915481114545715 1 0.0652382969856262 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6637450 chr12:6637440 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_17501 0 0 1 0 0 Nucleus 1 0.500231632404655 1 0.999536735190691 hm5C_site_18930 DeepMRMD:1;iRNA_m5C:0.999536735190691 18931 chr3 179341750 179341750 1 + A G BRCA 179341758 + 179341738 179341778 41 GCATGTGAGAGGAGATGGACCCTGGTATTACTATGAGACAA GCATGTGAGAGGGGATGGACCCTGGTATTACTATGAGACAA < 41bp 1 0.622514730307865 1 0.396362721920013 experiment 0.754970539384269 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179341758 chr3:179341750 nonsynonymous SNV 0.608 1 13 hm5C_associated_SNPs_17502 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18931 DeepMRMD:1;iRNA_m5C:0.999536712157815 18932 chr18 56063421 56063421 1 + C G BRCA 56063414 + 56063394 56063434 41 TGCAGCTTTAATCGCCTTGACTTACCTCCATATGAAACCTT TGCAGCTTTAATCGCCTTGACTTACCTGCATATGAAACCTT < 41bp 1 0.0410890881830614 1 0.0631028413772583 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:56063414 chr18:56063421 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_17503 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18932 DeepMRMD:1;iRNA_m5C:0.999536712157815 18933 chr10 5495482 5495482 1 + G A BRCA 5495471 + 5495451 5495491 41 GTTGACAAGAATAGGAGAAGCAACCAAGCCTGATGGAACAG GTTGACAAGAATAGGAGAAGCAACCAAGCCTAATGGAACAG < 41bp 1 0.362142677465337 1 0.235346704721451 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NET1 ENSG00000173848 CDS Human protein_coding chr10:5495471 chr10:5495482 nonsynonymous SNV 0.955 0 32 hm5C_associated_SNPs_17504 0 0 1 0 2 Cytosol 1 0.500231706932255 1 0.999536586135489 hm5C_site_18933 DeepMRMD:1;iRNA_m5C:0.999536586135489 18934 chr17 46128581 46128581 1 + C G BRCA 46128578 + 46128558 46128598 41 GGACGTGGATACTTACCTGACCTCACAGCTTCCCCCACTCC GGACGTGGATACTTACCTGACCTGACAGCTTCCCCCACTCC < 41bp 1 0.328745194476091 1 0.0423019826412201 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128578 chr17:46128581 stopgain 1.000 1 24 hm5C_associated_SNPs_17505 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_18934 DeepMRMD:1;iRNA_m5C:0.999536712157817 18935 chr17 46128581 46128581 1 + C G BRCA 46128592 + 46128572 46128612 41 ACCTGACCTCACAGCTTCCCCCACTCCGGGAGATCATCCTG ACCTGACCTGACAGCTTCCCCCACTCCGGGAGATCATCCTG < 41bp 1 0.159160210128899 1 0.152371197938919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128592 chr17:46128581 stopgain 1.000 1 10 hm5C_associated_SNPs_17506 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_18935 DeepMRMD:1;iRNA_m5C:0.999536712157816 18936 chr5 36985782 36985782 1 + C T BRCA 36985791 + 36985771 36985811 41 CAGAGCGACATCGAGGGGATCAGTCTAGGGTTCGAAGACCA CAGAGCGACATTGAGGGGATCAGTCTAGGGTTCGAAGACCA < 41bp 1 0.116149448419462 1 0.0334883332252502 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:36985791 chr5:36985782 stopgain 0.996 1 12 hm5C_associated_SNPs_17507 1 0 1 0 0 Nucleus 1 0.500231643921088 1 0.999536712157824 hm5C_site_18936 DeepMRMD:1;iRNA_m5C:0.999536712157824 Cornelia de Lange syndrome 1 Cornelia de Lange syndrome 1 18937 chr1 161088976 161088976 1 + G A BRCA 161088961 + 161088941 161088981 41 TCTCCTCTTCCTCCTGCGAACTGCCCCTGGTGGCTGTGTGC TCTCCTCTTCCTCCTGCGAACTGCCCCTGGTGGCTATGTGC < 41bp 1 0.330407995522493 1 0.0770897567272186 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NIT1 ENSG00000158793 CDS Human protein_coding chr1:161088961 chr1:161088976 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_17508 0 0 1 0 1 nucleolus 1 0.500232752823378 1 0.999534494353245 hm5C_site_18937 DeepMRMD:1;iRNA_m5C:0.999534494353245 18938 chr9 35792578 35792578 1 + G A BRCA 35792598 + 35792578 35792618 41 GGGCACTGCCCGTGGACCTGCGGTTTGTCAGCTCCGAACTG AGGCACTGCCCGTGGACCTGCGGTTTGTCAGCTCCGAACTG < 41bp 1 0.539771272648462 1 0.512213706970215 experiment 0.920457454703077 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NPR2 ENSG00000159899 CDS Human protein_coding chr9:35792598 chr9:35792578 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_17509 0 0 1 0 0 chromatin 1 0.500231643921092 0.97557258605957 0.999536712157815 hm5C_site_18938 DeepMRMD:0.97557258605957;iRNA_m5C:0.999536712157815 18939 chr8 126194375 126194375 1 + G C BRCA 126194360 + 126194340 126194380 41 CTTAGGTGAAAGAAGAACGTCCAGAAAAAATACCAGATTTA CTTAGGTGAAAGAAGAACGTCCAGAAAAAATACCACATTTA < 41bp 1 0.35671482800105 1 0.212211430072784 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSMCE2 ENSG00000156831 CDS Human protein_coding chr8:126194360 chr8:126194375 nonsynonymous SNV 0.954 4 36 hm5C_associated_SNPs_17510 0 0 1 0 1 Cytosol 1 0.500231610738916 1 0.999536778522168 hm5C_site_18939 DeepMRMD:1;iRNA_m5C:0.999536778522168 18940 chr7 2290629 2290629 1 + C T BRCA 2290643 + 2290623 2290663 41 TGGACACGGTCTAGCGGGAGCCCAGGGCAGCCCCTGGGCAG TGGACATGGTCTAGCGGGAGCCCAGGGCAGCCCCTGGGCAG < 41bp 1 0.649209575418831 1 0.322963535785675 experiment 0.701580849162337 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUDT1 ENSG00000106268 CDS Human protein_coding chr7:2290643 chr7:2290629 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_17511 0 0 1 0 0 Ribosome 1 0.500231643930477 1 0.999536712139046 hm5C_site_18940 DeepMRMD:1;iRNA_m5C:0.999536712139046 18941 chr7 23239963 23239963 1 + G C BRCA 23239949 + 23239929 23239969 41 AGGTATCTCTACTTCTGCTCCAGCTTTTGGATTTGGGAAGC AGGTATCTCTACTTCTGCTCCAGCTTTTGGATTTCGGAAGC < 41bp 1 0.623549643157954 1 0.153446406126022 experiment 0.752900713684093 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23239949 chr7:23239963 nonsynonymous SNV 0.999 0 35 hm5C_associated_SNPs_17514 0 0 1 0 0 Cytosol 1 0.500231643918949 1 0.999536712162101 hm5C_site_18941 DeepMRMD:1;iRNA_m5C:0.999536712162101 18942 chr1 228451893 228451893 1 + G C BRCA 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTCAGCTGCGA < 41bp 1 0.114989849128234 1 0.847709476947784 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451893 synonymous SNV . 0 33 hm5C_associated_SNPs_17515 0 0 0 0 1 Ribosome 1 0.500231643913508 0.304581046104432 0.999536712172984 hm5C_site_18942 DeepMRMD:0.304581046104432;iRNA_m5C:0.999536712172984 18943 chr12 58114298 58114298 1 + C T BRCA 58114286 + 58114266 58114306 41 ACGAGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAG ACGAGAAACCTCAAGGAGATCTTCTTCAATATTTTGGTAAG < 41bp 1 0.353696550567407 1 0.0667219460010529 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58114286 chr12:58114298 synonymous SNV . 0 33 hm5C_associated_SNPs_17516 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18943 DeepMRMD:1;iRNA_m5C:0.999536712157815 18944 chr12 58114298 58114298 1 + C T BRCA 58114289 + 58114269 58114309 41 AGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAGAGG AGAAACCTCAAGGAGATCTTCTTCAATATTTTGGTAAGAGG < 41bp 1 0.528906425114208 1 0.740516245365143 experiment 0.942187149771583 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58114289 chr12:58114298 synonymous SNV . 0 30 hm5C_associated_SNPs_17517 0 0 1 0 1 Nucleus 1 0.500231685446591 0.518967509269714 0.999536629106818 hm5C_site_18944 DeepMRMD:0.518967509269714;iRNA_m5C:0.999536629106818 18945 chr20 3888593 3888593 1 + G C BRCA 3888598 + 3888578 3888618 41 CCATGGTTTGGACTGGATATCGGTGGAACTCTGGTCAAGCT CCATGGTTTGGACTGCATATCGGTGGAACTCTGGTCAAGCT < 41bp 1 0.603173934793086 1 0.710408687591553 experiment 0.793652130413828 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PANK2 ENSG00000125779 CDS Human protein_coding chr20:3888598 chr20:3888593 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_17518 0 0 1 0 1 Ribosome 1 0.500231700492332 0.579182624816894 0.999536599015337 hm5C_site_18945 DeepMRMD:0.579182624816894;iRNA_m5C:0.999536599015337 18946 chr5 140573649 140573649 1 + G T BRCA 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATCAACGCTGACAACGGCCACCTGTTCGCCCTCAGGTC < 41bp 1 0.171205868388476 1 0.089317262172699 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573649 synonymous SNV . 0 12 hm5C_associated_SNPs_17519 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18946 DeepMRMD:1;iRNA_m5C:0.999536712157815 18947 chr5 140764680 140764680 1 + G A BRCA 140764677 + 140764657 140764697 41 GGCTTGGCGAACGTGCCCACCTCGCACTTTGTGGGCATGGA GGCTTGGCGAACGTGCCCACCTCACACTTTGTGGGCATGGA < 41bp 1 0.0794728711534813 1 0.0592138171195984 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCDHGA7 ENSG00000253537 CDS Human protein_coding chr5:140764677 chr5:140764680 synonymous SNV . 0 24 hm5C_associated_SNPs_17520 0 0 0 0 0 exosome 1 0.500231754185007 1 0.999536491629986 hm5C_site_18947 DeepMRMD:1;iRNA_m5C:0.999536491629986 18948 chr11 65389721 65389721 1 + G T BRCA 65389719 + 65389699 65389739 41 CCCTGCACGAATCCCAGGAGCAGACACTGATGGAAGAAGCG CCCTGCACGAATCCCAGGAGCATACACTGATGGAAGAAGCG < 41bp 1 0.0138765699520809 1 0.181358933448792 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65389719 chr11:65389721 nonsynonymous SNV 0.988 1 23 hm5C_associated_SNPs_17521 0 0 1 0 1 Ribosome 1 0.500219357342439 1 0.999561285315123 hm5C_site_18948 DeepMRMD:1;iRNA_m5C:0.999561285315123 18949 chr10 105179384 105179384 1 + C T BRCA 105179366 + 105179346 105179386 41 CCCAAGAACTTCTCAGAAATCCATCCTGGAATGCTGCTCAT CCCAAGAACTTCTCAGAAATCCATCCTGGAATGCTGCTTAT < 41bp 1 0.0623419434801538 1 0.170932948589325 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105179366 chr10:105179384 synonymous SNV . 0 39 hm5C_associated_SNPs_17522 0 0 1 0 2 Nucleus 1 0.500231643915876 1 0.999536712168248 hm5C_site_18949 DeepMRMD:1;iRNA_m5C:0.999536712168248 18950 chrX 19373834 19373834 1 + G A BRCA 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAAAGGCAACAAGGTTTGCTGCTGCCT < 41bp 1 0.658117305635708 1 0.229483604431152 experiment 0.683765388728585 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373834 nonsynonymous SNV 0.998 5 17 hm5C_associated_SNPs_17523 0 0 1 0 2 Ribosome 1 0.50023164509892 1 0.99953670980216 hm5C_site_18950 DeepMRMD:1;iRNA_m5C:0.99953670980216 18951 chrX 19373844 19373844 1 + G A BRCA 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAGAGGCAACAAAGTTTGCTGCTGCCT < 41bp 1 0.607946295315388 1 0.336463510990143 experiment 0.784107409369224 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373844 nonsynonymous SNV 0.997 1 27 hm5C_associated_SNPs_17524 0 0 1 0 2 Ribosome 1 0.500231643891709 1 0.999536712216582 hm5C_site_18951 DeepMRMD:1;iRNA_m5C:0.999536712216582 18952 chr14 56763462 56763462 1 + C T BRCA 56763475 + 56763455 56763495 41 CGCCGCCCGGCCTCAGTGTCCTGTGGGGCTCAACACCCTGG CGCCGCCTGGCCTCAGTGTCCTGTGGGGCTCAACACCCTGG < 41bp 1 0.575497213782543 1 0.21205398440361 experiment 0.849005572434914 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PELI2 ENSG00000139946 CDS Human protein_coding chr14:56763475 chr14:56763462 nonsynonymous SNV 0.096 4 8 hm5C_associated_SNPs_17525 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18952 DeepMRMD:1;iRNA_m5C:0.999536712157815 18953 chr1 249210807 249210807 1 + C G BRCA 249210825 + 249210805 249210845 41 GTCATTGCTGGGAGAGGTATCCACTCAAAGGTGAAGTCTGC GTGATTGCTGGGAGAGGTATCCACTCAAAGGTGAAGTCTGC < 41bp 1 0.200342707820842 1 0.329012274742126 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249210825 chr1:249210807 synonymous SNV . 0 3 hm5C_associated_SNPs_17526 0 0 1 0 1 Cytosol 1 0.500231649439252 1 0.999536701121496 hm5C_site_18953 DeepMRMD:1;iRNA_m5C:0.999536701121496 18954 chrX 77378415 77378415 1 + T C BRCA 77378418 + 77378398 77378438 41 TGGTGGTGGAATGGCTTTTACCTTCCTTAAGGTGCTCAACA TGGTGGTGGAATGGCTTCTACCTTCCTTAAGGTGCTCAACA < 41bp 1 0.0241625438497796 1 0.171668648719788 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378418 chrX:77378415 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_17527 0 0 1 1 2 Ribosome 1 0.500231643920981 1 0.999536712158039 hm5C_site_18954 DeepMRMD:1;iRNA_m5C:0.999536712158039 18955 chr12 9070338 9070338 1 + C G BRCA 9070333 + 9070313 9070353 41 GGGAGTTCTAGCTCAGGGGGCAGCTCTCGGCCCCAGATAGC GGGAGTTCTAGCTCAGGGGGCAGCTGTCGGCCCCAGATAGC < 41bp 1 0.299978840574384 1 0.205008089542389 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHC1 ENSG00000111752 CDS Human protein_coding chr12:9070333 chr12:9070338 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_17528 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_18955 DeepMRMD:1;iRNA_m5C:0.999536712157815 18956 chr1 6681554 6681554 1 + A C BRCA 6681570 + 6681550 6681590 41 CCACACCTGGATTCACCTGTCCTGTGCGAAAATCCGGAAAT CCACCCCTGGATTCACCTGTCCTGTGCGAAAATCCGGAAAT < 41bp 1 0.176752934151103 1 0.244434028863907 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681570 chr1:6681554 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_17529 0 0 1 0 1 cytosol 1 0.500231643729447 1 0.999536712541107 hm5C_site_18956 DeepMRMD:1;iRNA_m5C:0.999536712541107 18957 chr11 118516531 118516531 1 + C A BRCA 118516515 + 118516495 118516535 41 GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTCATGG GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTAATGG < 41bp 1 0.596430631809079 1 0.724093496799469 experiment 0.807138736381842 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118516515 chr11:118516531 synonymous SNV . 0 37 hm5C_associated_SNPs_17530 0 0 1 0 1 Cytosol 1 0.500231643921095 0.551813006401062 0.99953671215781 hm5C_site_18957 DeepMRMD:0.551813006401062;iRNA_m5C:0.99953671215781 18958 chr20 43243339 43243339 1 + G A BRCA 43243326 + 43243306 43243346 41 AAGCTGGCTGGAGACATGGGCGAGCTGGCACTCGAGGGGGC AAGCTGGCTGGAGACATGGGCGAGCTGGCACTCAAGGGGGC < 41bp 1 0.641685655015789 1 0.482089698314667 experiment 0.716628689968421 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKIG ENSG00000168734 CDS Human protein_coding chr20:43243326 chr20:43243339 nonsynonymous SNV 0.092 1 34 hm5C_associated_SNPs_17531 0 0 1 0 1 Ribosome 1 0.500231643585262 1 0.999536712829475 hm5C_site_18958 DeepMRMD:1;iRNA_m5C:0.999536712829475 18959 chr14 68042162 68042162 1 + C G BRCA 68042177 + 68042157 68042197 41 ATCTTCTACTACTATCGGAGCCATGAGGACAAGGTACTTCT ATCTTGTACTACTATCGGAGCCATGAGGACAAGGTACTTCT < 41bp 1 0.0434764212395363 1 0.137944012880325 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042177 chr14:68042162 nonsynonymous SNV 0.995 1 6 hm5C_associated_SNPs_17532 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921076 1 0.999536712157848 hm5C_site_18959 DeepMRMD:1;iRNA_m5C:0.999536712157848 18960 chr14 68042170 68042170 1 + A C BRCA 68042177 + 68042157 68042197 41 ATCTTCTACTACTATCGGAGCCATGAGGACAAGGTACTTCT ATCTTCTACTACTCTCGGAGCCATGAGGACAAGGTACTTCT < 41bp 1 0.0421682300964795 1 0.0932303667068481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042177 chr14:68042170 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_17533 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643896085 1 0.99953671220783 hm5C_site_18960 DeepMRMD:1;iRNA_m5C:0.99953671220783 18961 chr1 45270401 45270401 1 + C A BRCA 45270421 + 45270401 45270441 41 CTGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCA ATGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCA < 41bp 1 0.692226760135827 1 0.428650945425034 experiment 0.615546479728347 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270421 chr1:45270401 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_17534 0 0 0 0 2 Cytosol 1 0.500231645241482 1 0.999536709517037 hm5C_site_18961 DeepMRMD:1;iRNA_m5C:0.999536709517037 18962 chr1 12030842 12030842 1 + C T BRCA 12030850 + 12030830 12030870 41 TTGCGCCCATGACGGAGAAGCTCTACCCCGGCTACTACACC TTGCGCCCATGATGGAGAAGCTCTACCCCGGCTACTACACC < 41bp 1 0.392208531398803 1 0.261684954166412 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12030850 chr1:12030842 nonsynonymous SNV 0.826 3 13 hm5C_associated_SNPs_17535 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_18962 DeepMRMD:1;iRNA_m5C:0.999536712157815 18963 chr3 126739137 126739137 1 + C T BRCA 126739145 + 126739125 126739165 41 ACATATGCCATGCGGGTGCTCTTTCCTGGGATCGAGGACCA ACATATGCCATGTGGGTGCTCTTTCCTGGGATCGAGGACCA < 41bp 1 0.0666547763107687 1 0.126771122217178 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126739145 chr3:126739137 nonsynonymous SNV 0.981 4 13 hm5C_associated_SNPs_17536 0 0 1 0 2 Ribosome 1 0.50023164424556 1 0.99953671150888 hm5C_site_18963 DeepMRMD:1;iRNA_m5C:0.99953671150888 18964 chrX 153696522 153696522 1 + G T BRCA 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCGTTCTCTTCCCGGGCATCGAGGCCCACCCG < 41bp 1 0.561413172881846 1 0.896236419677734 experiment 0.877173654236307 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696522 synonymous SNV . 0 14 hm5C_associated_SNPs_17537 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643979306 0.207527160644532 0.999536712041388 hm5C_site_18964 DeepMRMD:0.207527160644532;iRNA_m5C:0.999536712041388 18965 chrX 153696522 153696522 1 + G T BRCA 153696537 + 153696517 153696557 41 CGCGTGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA CGCGTTCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA < 41bp 1 0.639532681866748 1 0.955585598945618 experiment 0.720934636266503 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696537 chrX:153696522 synonymous SNV . 0 6 hm5C_associated_SNPs_17538 0 0 0 0 2 Endoplasmic reticulum 1 0.500231693295573 0.088828802108764 0.999536613408853 hm5C_site_18965 DeepMRMD:0.088828802108764;iRNA_m5C:0.999536613408853 18966 chr12 94563009 94563009 1 + C T BRCA 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGTACCGTGGTAAT < 41bp 1 0.0498712588937968 1 0.101394027471542 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563009 synonymous SNV . 0 30 hm5C_associated_SNPs_17539 0 0 1 0 2 chromatin 1 0.500231643922647 1 0.999536712154706 hm5C_site_18966 DeepMRMD:1;iRNA_m5C:0.999536712154706 18967 chr10 118306869 118306869 1 + C T BRCA 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAT < 41bp 1 0.276092641928013 1 0.0487162470817566 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306869 nonsynonymous SNV 0.179 1 41 hm5C_associated_SNPs_17540 0 0 0 0 2 unknown 1 0.500231660317164 1 0.999536679365673 hm5C_site_18967 DeepMRMD:1;iRNA_m5C:0.999536679365673 18968 chr10 118306869 118306869 1 + C T BRCA 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTATGG < 41bp 1 0.66868875828421 1 0.194298923015594 experiment 0.662622483431581 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306869 nonsynonymous SNV 0.179 1 39 hm5C_associated_SNPs_17541 0 0 0 0 2 unknown 1 0.500231517417419 1 0.999536965165162 hm5C_site_18968 DeepMRMD:1;iRNA_m5C:0.999536965165162 18969 chr10 118306869 118306869 1 + C T BRCA 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTATGGAA < 41bp 1 0.242934381632923 1 0.127418696880341 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306869 nonsynonymous SNV 0.179 1 37 hm5C_associated_SNPs_17542 0 0 0 0 2 unknown 1 0.50023164161731 1 0.99953671676538 hm5C_site_18969 DeepMRMD:1;iRNA_m5C:0.99953671676538 18970 chr10 118306869 118306869 1 + C T BRCA 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTATGGAAA < 41bp 1 0.49520915300964 1 0.509301483631134 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306869 nonsynonymous SNV 0.179 1 36 hm5C_associated_SNPs_17543 0 0 0 0 2 unknown 1 0.500231643921092 0.981397032737732 0.999536712157815 hm5C_site_18970 DeepMRMD:0.981397032737732;iRNA_m5C:0.999536712157815 18971 chr1 166819226 166819226 1 + G A BRCA 166819242 + 166819222 166819262 41 TCTTGAATGGCTTCCGGGGCCATGCCACAGATTCCGTGAAG TCTTAAATGGCTTCCGGGGCCATGCCACAGATTCCGTGAAG < 41bp 1 0.229798734981493 1 0.178959399461746 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control POGK ENSG00000143157 CDS Human protein_coding chr1:166819242 chr1:166819226 synonymous SNV . 0 5 hm5C_associated_SNPs_17544 0 0 1 0 0 Nucleus 1 0.500231651353524 1 0.999536697292953 hm5C_site_18971 DeepMRMD:1;iRNA_m5C:0.999536697292953 18972 chr13 28197146 28197146 1 + C T BRCA 28197130 + 28197110 28197150 41 TTGTATTGCACGAGGAAGACCATACCCTAGGAAATTCTCTA TTGTATTGCACGAGGAAGACCATACCCTAGGAAATTTTCTA < 41bp 1 0.0318521006278592 1 0.237896472215652 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1D ENSG00000186184 CDS Human protein_coding chr13:28197130 chr13:28197146 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_17545 0 0 1 0 0 Ribosome 1 0.500231643917085 1 0.999536712165831 hm5C_site_18972 DeepMRMD:1;iRNA_m5C:0.999536712165831 18973 chr3 184082777 184082777 1 + G A BRCA 184082795 + 184082775 184082815 41 GTGAATCTTTCAAGATGGATCTAATCTTAGATGTAAACATT GTAAATCTTTCAAGATGGATCTAATCTTAGATGTAAACATT < 41bp 1 0.20229360662664 1 0.0535378754138947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2H ENSG00000163882 CDS Human protein_coding chr3:184082795 chr3:184082777 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_17546 0 0 1 0 1 Ribosome 1 0.500231643917458 1 0.999536712165085 hm5C_site_18973 DeepMRMD:1;iRNA_m5C:0.999536712165085 18974 chr16 22337444 22337444 1 + C T BRCA 22337437 + 22337417 22337457 41 CTGAAGGCCTTCGTGGAGGCCACCTTTCAGAGACAGTTTGT CTGAAGGCCTTCGTGGAGGCCACCTTTTAGAGACAGTTTGT < 41bp 1 0.342551713814561 1 0.0916182398796082 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337437 chr16:22337444 stopgain 0.998 0 28 hm5C_associated_SNPs_17547 0 0 1 0 0 Ribosome 1 0.500236025059293 1 0.999527949881414 hm5C_site_18974 DeepMRMD:1;iRNA_m5C:0.999527949881414 18975 chr12 27832871 27832871 1 + G C BRCA 27832883 + 27832863 27832903 41 TAGACTTAGGAGAAGTCAATCAACTACATTCAACCCAGATG TAGACTTACGAGAAGTCAATCAACTACATTCAACCCAGATG < 41bp 1 0.163219966841974 1 0.379010766744614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27832883 chr12:27832871 nonsynonymous SNV 0.997 3 9 hm5C_associated_SNPs_17548 0 0 0 0 1 Nucleus 1 0.500231654592952 1 0.999536690814097 hm5C_site_18975 DeepMRMD:1;iRNA_m5C:0.999536690814097 18976 chr2 242089920 242089920 1 + G A BRCA 242089903 + 242089883 242089923 41 GATTCCGGAAAGGGGAAGAGCAGCCAACATGGCGGCGGAAC GATTCCGGAAAGGGGAAGAGCAGCCAACATGGCGGCGAAAC < 41bp 1 0.4568021559539 1 0.684814929962158 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242089903 chr2:242089920 nonsynonymous SNV 0.999 0 38 hm5C_associated_SNPs_17549 0 0 1 0 0 Ribosome 1 0.500231643921092 0.630370140075684 0.999536712157815 hm5C_site_18976 DeepMRMD:0.630370140075684;iRNA_m5C:0.999536712157815 18977 chr8 26227655 26227655 1 + T A BRCA 26227656 + 26227636 26227676 41 GTCTATTTTCACAGTGTTGTCATGACTGGATCTTACAATAA GTCTATTTTCACAGTGTTGACATGACTGGATCTTACAATAA < 41bp 1 0.414597842940546 1 0.0731663107872009 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26227656 chr8:26227655 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_17550 0 0 1 0 1 Cytosol 1 0.500231644675594 1 0.999536710648812 hm5C_site_18977 DeepMRMD:1;iRNA_m5C:0.999536710648812 18978 chr14 35579802 35579802 1 + A C BRCA 35579783 - 35579763 35579803 41 ATTAAGAGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA AGTAAGAGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA < 41bp 1 0.241454519465706 1 0.164282709360123 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP2R3C ENSG00000092020 CDS Human protein_coding chr14:35579783 chr14:35579802 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_17551 0 0 1 0 2 chromatin 1 0.500231632015728 1 0.999536735968545 hm5C_site_18978 DeepMRMD:1;iRNA_m5C:0.999536735968545 18979 chr9 131897091 131897091 1 + G T BRCA 131897102 + 131897082 131897122 41 GCAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG GCAGCCTTCTCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG < 41bp 1 0.484852920531142 1 0.217782258987427 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131897102 chr9:131897091 nonsynonymous SNV 0.998 3 10 hm5C_associated_SNPs_17552 0 0 1 0 2 Nucleus 1 0.500231652095579 1 0.999536695808842 hm5C_site_18979 DeepMRMD:1;iRNA_m5C:0.999536695808842 18980 chr10 103906618 103906618 1 + A G BRCA 103906635 + 103906615 103906655 41 TCCATGTGGGCTCTGGGGACCATGACTATTGTGTCCGGAGC TCCGTGTGGGCTCTGGGGACCATGACTATTGTGTCCGGAGC < 41bp 1 0.38482112696703 1 0.226377189159393 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103906635 chr10:103906618 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_17553 0 0 1 0 0 Cytosol 1 0.500232327675506 1 0.999535344648988 hm5C_site_18980 DeepMRMD:1;iRNA_m5C:0.999535344648988 18981 chrX 106893241 106893241 1 + A G BRCA 106893248 + 106893228 106893268 41 CCGTTTCTTACCTATTCAGCCATGTCCCTTTATAATAGAGT CCGTTTCTTACCTGTTCAGCCATGTCCCTTTATAATAGAGT < 41bp 1 0.0658731453481421 1 0.177348375320435 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893248 chrX:106893241 synonymous SNV . 0 14 hm5C_associated_SNPs_17556 0 0 1 0 1 Ribosome 1 0.500231643845289 1 0.999536712309423 hm5C_site_18981 DeepMRMD:1;iRNA_m5C:0.999536712309423 18982 chrX 106893241 106893241 1 + A G BRCA 106893253 + 106893233 106893273 41 TCTTACCTATTCAGCCATGTCCCTTTATAATAGAGTAACTT TCTTACCTGTTCAGCCATGTCCCTTTATAATAGAGTAACTT < 41bp 1 0.105442663154219 1 0.0657326579093933 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893253 chrX:106893241 synonymous SNV . 0 9 hm5C_associated_SNPs_17557 0 0 1 0 1 Ribosome 1 0.50023164393881 1 0.999536712122381 hm5C_site_18982 DeepMRMD:1;iRNA_m5C:0.999536712122381 18983 chr19 50096688 50096688 1 + A C BRCA 50096691 + 50096671 50096711 41 CTATGCCACCAACCACCACCCGGCAGGTACGGCCCCCATCC CTATGCCACCAACCACCCCCCGGCAGGTACGGCCCCCATCC < 41bp 1 0.698253308882043 1 0.904342353343964 experiment 0.603493382235913 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRR12 ENSG00000126464 CDS Human protein_coding chr19:50096691 chr19:50096688 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_17558 0 0 1 0 1 Exosome 1 0.500231643921092 0.191315293312072 0.999536712157815 hm5C_site_18983 DeepMRMD:0.191315293312072;iRNA_m5C:0.999536712157815 18984 chr7 142459748 142459748 1 + C T BRCA 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCCCCAATACGACAGGAAGACTCTGAACAATGACATTATGT < 41bp 1 0.484896883302096 1 0.235370278358459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459748 synonymous SNV . 0 37 hm5C_associated_SNPs_17559 0 0 0 0 0 Cytosol 1 0.500230558283818 1 0.999538883432364 hm5C_site_18984 DeepMRMD:1;iRNA_m5C:0.999538883432364 18985 chr7 142459748 142459748 1 + C T BRCA 142459739 + 142459719 142459759 41 TACGACAGGAAGACTCTGAACAATGACATCATGTTAATCAA TACGACAGGAAGACTCTGAACAATGACATTATGTTAATCAA < 41bp 1 0.442782606794122 1 0.196368515491486 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459739 chr7:142459748 synonymous SNV . 0 30 hm5C_associated_SNPs_17560 0 0 0 0 0 Cytosol 1 0.500231643941675 1 0.999536712116651 hm5C_site_18985 DeepMRMD:1;iRNA_m5C:0.999536712116651 18986 chr7 142459748 142459748 1 + C T BRCA 142459745 + 142459725 142459765 41 AGGAAGACTCTGAACAATGACATCATGTTAATCAAGCTCTC AGGAAGACTCTGAACAATGACATTATGTTAATCAAGCTCTC < 41bp 1 0.397221506958929 1 0.0423688590526581 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459745 chr7:142459748 synonymous SNV . 0 24 hm5C_associated_SNPs_17561 0 0 0 0 0 Cytosol 1 0.500230930245584 1 0.999538139508833 hm5C_site_18986 DeepMRMD:1;iRNA_m5C:0.999538139508833 18987 chr7 142459748 142459748 1 + C T BRCA 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATGACATTATGTTAATCAAGCTCTCCTCACGTGCAGT < 41bp 1 0.436825394979048 1 0.484001487493515 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459748 synonymous SNV . 0 12 hm5C_associated_SNPs_17562 0 0 0 0 0 Cytosol 1 0.500232306806048 1 0.999535386387904 hm5C_site_18987 DeepMRMD:1;iRNA_m5C:0.999535386387904 18988 chr7 142459748 142459748 1 + C T BRCA 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATGACATTATGTTAATCAAGCTCTCCTCACGTGCAGTAATC < 41bp 1 0.176145454643728 1 0.0442814826965332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459748 synonymous SNV . 0 8 hm5C_associated_SNPs_17563 0 0 0 0 0 Cytosol 1 0.500231013660872 1 0.999537972678255 hm5C_site_18988 DeepMRMD:1;iRNA_m5C:0.999537972678255 18989 chr7 142459748 142459748 1 + C T BRCA 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA GACATTATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA < 41bp 1 0.426864293526394 1 0.478155136108398 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459748 synonymous SNV . 0 6 hm5C_associated_SNPs_17564 0 0 0 0 0 Cytosol 1 0.500231644006699 1 0.999536711986603 hm5C_site_18989 DeepMRMD:1;iRNA_m5C:0.999536711986603 18990 chr7 142459748 142459748 1 + C T BRCA 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG CATTATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG < 41bp 1 0.319788849582043 1 0.145128339529037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459748 synonymous SNV . 0 4 hm5C_associated_SNPs_17565 0 0 0 0 0 Cytosol 1 0.50023163809484 1 0.99953672381032 hm5C_site_18990 DeepMRMD:1;iRNA_m5C:0.99953672381032 18991 chr7 142459748 142459748 1 + C T BRCA 142459766 + 142459746 142459786 41 ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC ATTATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC < 41bp 1 0.420146101594554 1 0.302729994058609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459766 chr7:142459748 synonymous SNV . 0 3 hm5C_associated_SNPs_17566 0 0 0 0 0 Cytosol 1 0.500233128697609 1 0.999533742604781 hm5C_site_18991 DeepMRMD:1;iRNA_m5C:0.999533742604781 18992 chr1 151006389 151006389 1 + T C BRCA 151006407 + 151006387 151006427 41 TCTCGAAAGAAACTTCTGCCCCTGCTCCAGGAAGCCCTGTC TCCCGAAAGAAACTTCTGCCCCTGCTCCAGGAAGCCCTGTC < 41bp 1 0.134630788975821 1 0.0546343624591827 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:151006407 chr1:151006389 synonymous SNV . 0 3 hm5C_associated_SNPs_17568 0 0 1 0 0 chromatin 1 0.500231643921194 1 0.999536712157613 hm5C_site_18992 DeepMRMD:1;iRNA_m5C:0.999536712157613 18993 chr14 53173920 53173920 1 + G A BRCA 53173926 + 53173906 53173946 41 CCGGCATCCCCTATGAGAGACGGCTTCTCATCATGGCGGAC CCGGCATCCCCTATAAGAGACGGCTTCTCATCATGGCGGAC < 41bp 1 0.539407766416955 1 0.138485729694366 experiment 0.921184467166089 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53173926 chr14:53173920 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_17569 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_18993 DeepMRMD:1;iRNA_m5C:0.999536712157815 18994 chr2 232035376 232035376 1 + G A BRCA 232035362 + 232035342 232035382 41 ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAAC ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGAAGGAAC < 41bp 1 0.582184714983364 1 0.122526586055756 experiment 0.835630570033272 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232035362 chr2:232035376 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_17570 0 0 1 0 2 Nucleus 1 0.500230938083009 1 0.999538123833981 hm5C_site_18994 DeepMRMD:1;iRNA_m5C:0.999538123833981 18995 chr19 808581 808581 1 + A G BRCA 808586 + 808566 808606 41 CACAAGCTGCACGGGAAGCCCATCCGCATCACGCTCTCGAA CACAAGCTGCACGGGGAGCCCATCCGCATCACGCTCTCGAA < 41bp 1 0.263294974710837 1 0.157258212566376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808586 chr19:808581 nonsynonymous SNV 0.756 3 16 hm5C_associated_SNPs_17571 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_18995 DeepMRMD:1;iRNA_m5C:0.999536712157815 18996 chr12 6879111 6879111 1 + G T BRCA 6879124 + 6879104 6879144 41 TGAGGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGG TGAGGAGTAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGG < 41bp 1 0.342489804347228 1 0.35182797908783 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6879124 chr12:6879111 stopgain 0.996 0 8 hm5C_associated_SNPs_17573 0 0 1 0 2 Ribosome 1 0.500231576803478 1 0.999536846393043 hm5C_site_18996 DeepMRMD:1;iRNA_m5C:0.999536846393043 18997 chr12 6879111 6879111 1 + G T BRCA 6879127 + 6879107 6879147 41 GGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAG GGAGTAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAG < 41bp 1 0.319291270434687 1 0.559151589870453 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMS ENSG00000159335 CDS Human protein_coding chr12:6879127 chr12:6879111 stopgain 0.996 0 5 hm5C_associated_SNPs_17574 0 0 1 0 2 Ribosome 1 0.500231643924248 0.881696820259094 0.999536712151505 hm5C_site_18997 DeepMRMD:0.881696820259094;iRNA_m5C:0.999536712151505 18998 chr3 61975361 61975361 1 + C G BRCA 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTGCTATTGAC < 41bp 1 0.161064119443207 1 0.33543199300766 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975361 nonsynonymous SNV 0.998 5 33 hm5C_associated_SNPs_17576 0 0 1 0 1 Ribosome 1 0.500231643927586 1 0.999536712144829 hm5C_site_18998 DeepMRMD:1;iRNA_m5C:0.999536712144829 18999 chr15 41021711 41021711 1 + T G BRCA 41021710 + 41021690 41021730 41 TTGTTTCCTGTAGGTATGCACTGCTTATTGTAGACAGTGCC TTGTTTCCTGTAGGTATGCACGGCTTATTGTAGACAGTGCC < 41bp 1 0.300269402738334 1 0.271614789962769 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAD51 ENSG00000051180 CDS Human protein_coding chr15:41021710 chr15:41021711 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_17577 0 0 1 4 1 Cytosol 1 0.500231643916782 1 0.999536712166437 hm5C_site_18999 DeepMRMD:1;iRNA_m5C:0.999536712166437 19000 chr2 109347330 109347330 1 + G A BRCA 109347326 + 109347306 109347346 41 GAAGAAAACACAGACAAAGCCGTTGAATGTTACAGGGTAAG GAAGAAAACACAGACAAAGCCGTTAAATGTTACAGGGTAAG < 41bp 1 0.121461625152085 1 0.127247840166092 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347326 chr2:109347330 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_17578 0 0 1 0 0 Nucleus 1 0.500231640552803 1 0.999536718894394 hm5C_site_19000 DeepMRMD:1;iRNA_m5C:0.999536718894394 19001 chr3 25542765 25542765 1 + C A BRCA 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGACAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.256733970937904 1 0.0839190781116486 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542765 stopgain 0.999 1 15 hm5C_associated_SNPs_17579 0 0 1 0 2 nucleoplasm 1 0.500231644488956 1 0.999536711022088 hm5C_site_19001 DeepMRMD:1;iRNA_m5C:0.999536711022088 19002 chr3 50091809 50091809 1 + C G BRCA 50091805 + 50091785 50091825 41 TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG TGGGCACCGATCTTCCTGTTCATTGTGCAAGAACCCAAGAG < 41bp 1 0.181722335716741 1 0.0495773255825043 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091805 chr3:50091809 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_17580 0 0 1 0 1 Nucleus 1 0.500231643921088 1 0.999536712157823 hm5C_site_19002 DeepMRMD:1;iRNA_m5C:0.999536712157823 19003 chr1 145507682 145507682 1 + G A BRCA 145507671 + 145507651 145507691 41 CTCGATCGAAGGCGAGATGGCGGACGTGCTAGATCTTCACG CTCGATCGAAGGCGAGATGGCGGACGTGCTAAATCTTCACG < 41bp 1 0.269069442884949 1 0.161684334278107 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RBM8A ENSG00000131795 CDS Human other chr1:145507671 chr1:145507682 nonsynonymous SNV . 0 32 hm5C_associated_SNPs_17581 0 0 1 0 1 Ribosome 1 0.500231643920918 1 0.999536712158164 hm5C_site_19003 DeepMRMD:1;iRNA_m5C:0.999536712158164 19004 chr1 145663210 145663210 1 + C G BRCA 145663218 + 145663198 145663238 41 TTTAGACCCTTTCTAAGTAGCAGTCCACTGGACCAAGATAA TTTAGACCCTTTGTAAGTAGCAGTCCACTGGACCAAGATAA < 41bp 1 0.0716153342261533 1 0.127664566040039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663218 chr1:145663210 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_17582 0 0 1 0 1 Nucleus 1 0.500231643942693 1 0.999536712114614 hm5C_site_19004 DeepMRMD:1;iRNA_m5C:0.999536712114614 19005 chr1 28975130 28975130 1 + G T BRCA 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC CTTCTGTCGTTAGTGGCACACGTAGGGCAACTCGATTGCTC < 41bp 1 0.574684393109853 1 0.232621371746063 experiment 0.850631213780293 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975130 . . 0 11 hm5C_associated_SNPs_17583 0 0 1 2 0 unknown 1 0.50023164344438 1 0.999536713111241 hm5C_site_19005 DeepMRMD:1;iRNA_m5C:0.999536713111241 19006 chr1 28975208 28975208 1 + T C BRCA 28975227 + 28975207 28975247 41 GTATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC GCATTTGGGCAGCTGGTGATCGTTGGTCCCGGCGCCCTTTC < 41bp 1 0.654596998602342 1 0.358381509780884 experiment 0.690806002795316 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975227 chr1:28975208 . . 0 2 hm5C_associated_SNPs_17584 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19006 DeepMRMD:1;iRNA_m5C:0.999536712157815 19007 chrX 153628228 153628228 1 + A C BRCA 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATATCCGGGTGCGGCTCCCCCCCTTCCACGTCATCCGCAT < 41bp 1 0.345152050163738 1 0.049138605594635 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628228 nonsynonymous SNV 0.971 1 20 hm5C_associated_SNPs_17585 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19007 DeepMRMD:1;iRNA_m5C:0.999536712157815 19008 chr14 56233310 56233310 1 + C G BRCA 56233306 + 56233286 56233326 41 AAGCCTACAAGAAAGTTTGCCCTTCTGGGGCGACAGGCTCA AAGCCTACAAGAAAGTTTGCCCTTGTGGGGCGACAGGCTCA < 41bp 1 0.0942074925062159 1 0.0437092483043671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233306 chr14:56233310 . . 0 25 hm5C_associated_SNPs_17586 0 0 0 0 0 unknown 1 0.50023165833623 1 0.99953668332754 hm5C_site_19008 DeepMRMD:1;iRNA_m5C:0.99953668332754 19009 chr17 37358625 37358625 1 + G A BRCA 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCCGCAAGCCTGTGACAGTCCATTCCCGGGCTCGATGCCG < 41bp 1 0.157690885225989 1 0.0465043783187866 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358625 synonymous SNV . 0 18 hm5C_associated_SNPs_17587 0 0 1 0 2 chromatin 1 0.500231643927066 1 0.999536712145869 hm5C_site_19009 DeepMRMD:1;iRNA_m5C:0.999536712145869 19010 chr17 37359326 37359326 1 + G A BRCA 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGCGCCGGCTGCTCAAAAGATACCGT < 41bp 1 0.393783890965753 1 0.322026312351227 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359326 nonsynonymous SNV 0.381 1 31 hm5C_associated_SNPs_17589 0 0 1 0 2 chromatin 1 0.500231643852341 1 0.999536712295318 hm5C_site_19010 DeepMRMD:1;iRNA_m5C:0.999536712295318 19011 chr17 37359326 37359326 1 + G A BRCA 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCTGCTCAAAAGATACCGTGAA < 41bp 1 0.352475440338536 1 0.194762617349625 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359326 nonsynonymous SNV 0.381 1 28 hm5C_associated_SNPs_17590 0 0 1 0 2 chromatin 1 0.500231643927201 1 0.999536712145598 hm5C_site_19011 DeepMRMD:1;iRNA_m5C:0.999536712145598 19012 chr17 37359326 37359326 1 + G A BRCA 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCTGCTCAAAAGATACCGTGAATCT < 41bp 1 0.659949992911024 1 0.356244444847107 experiment 0.680100014177953 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359326 nonsynonymous SNV 0.381 1 25 hm5C_associated_SNPs_17591 0 0 1 0 2 chromatin 1 0.500231644070047 1 0.999536711859906 hm5C_site_19012 DeepMRMD:1;iRNA_m5C:0.999536711859906 19013 chr17 37359326 37359326 1 + G A BRCA 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAAAAGATACCGTGAATCTAAGAAGATCGA < 41bp 1 0.179738564694412 1 0.0873980224132538 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359326 nonsynonymous SNV 0.381 1 14 hm5C_associated_SNPs_17592 0 0 1 0 2 chromatin 1 0.500231644673998 1 0.999536710652003 hm5C_site_19013 DeepMRMD:1;iRNA_m5C:0.999536710652003 19014 chr11 61404878 61404878 1 + G C BRCA 61404877 + 61404857 61404897 41 TCAGTGCCCCATTCTATCATCGACGGGTACAAACGAGTCCT TCAGTGCCCCATTCTATCATCCACGGGTACAAACGAGTCCT < 41bp 1 0.336056648544578 1 0.0861775875091553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404877 chr11:61404878 . . 0 22 hm5C_associated_SNPs_17594 0 0 0 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_19014 DeepMRMD:1;iRNA_m5C:0.999536712157815 19015 chr11 61404878 61404878 1 + G C BRCA 61404895 + 61404875 61404915 41 ATCGACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGAC ATCCACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGAC < 41bp 1 0.246795591513005 1 0.0990104377269745 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404895 chr11:61404878 . . 0 4 hm5C_associated_SNPs_17595 0 0 0 0 0 unknown 1 0.500231954920302 1 0.999536090159395 hm5C_site_19015 DeepMRMD:1;iRNA_m5C:0.999536090159395 19016 chr11 67202569 67202569 1 + G A BRCA 67202551 + 67202531 67202571 41 TACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCC TACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCACC < 41bp 1 0.305016937951352 1 0.335906267166138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202551 chr11:67202569 nonsynonymous SNV 0.422 0 39 hm5C_associated_SNPs_17598 0 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19016 DeepMRMD:1;iRNA_m5C:0.999536712157815 19017 chr11 67202569 67202569 1 + G A BRCA 67202555 + 67202535 67202575 41 TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCCCCTC TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCACCCCTC < 41bp 1 0.599558039277473 1 0.157609492540359 experiment 0.800883921445054 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202555 chr11:67202569 nonsynonymous SNV 0.422 0 35 hm5C_associated_SNPs_17599 0 0 1 1 0 Ribosome 1 0.500231622903972 1 0.999536754192057 hm5C_site_19017 DeepMRMD:1;iRNA_m5C:0.999536754192057 19018 chr17 48557311 48557311 1 + G C BRCA 48557327 + 48557307 48557347 41 CCTGGAGGCTGTGGCACAGGCAGCCCACCTGCCTGCAGACT CCTGCAGGCTGTGGCACAGGCAGCCCACCTGCCTGCAGACT < 41bp 1 0.426111007537779 1 0.199509829282761 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48557327 chr17:48557311 nonsynonymous SNV 0.995 2 5 hm5C_associated_SNPs_17601 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19018 DeepMRMD:1;iRNA_m5C:0.999536712157815 19019 chr8 27528720 27528720 1 + C T BRCA 27528718 + 27528698 27528738 41 CCCCCGGGGTCTCCAGGGCCCTCAGGGCCTCAGGGAAAACC CCCCCGGGGTCTCCAGGGCCCTTAGGGCCTCAGGGAAAACC < 41bp 1 0.226660127633251 1 0.050943911075592 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27528718 chr8:27528720 nonsynonymous SNV 0.039 2 23 hm5C_associated_SNPs_17603 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19019 DeepMRMD:1;iRNA_m5C:0.999536712157815 19020 chr12 6619500 6619500 1 + C T BRCA 6619484 + 6619464 6619504 41 TGTAATCTTGGTGGGCGATACAGAGTTATGTGTGTTCACTG TGTAATCTTGGTGGGCGATACAGAGTTATGTGTGTTTACTG < 41bp 1 0.512022977219756 1 0.584633469581604 experiment 0.975954045560489 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619484 chr12:6619500 . . 0 37 hm5C_associated_SNPs_17604 0 0 1 1 0 unknown 1 0.500231644324573 0.830733060836792 0.999536711350853 hm5C_site_19020 DeepMRMD:0.830733060836792;iRNA_m5C:0.999536711350853 19021 chr12 6619500 6619500 1 + C T BRCA 6619502 + 6619482 6619522 41 TACAGAGTTATGTGTGTTCACTGTAAGGGCAGACCAACAAG TACAGAGTTATGTGTGTTTACTGTAAGGGCAGACCAACAAG < 41bp 1 0.514511427952229 1 0.287623196840286 experiment 0.970977144095542 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619502 chr12:6619500 . . 0 19 hm5C_associated_SNPs_17605 0 0 1 1 0 unknown 1 0.500231646608677 1 0.999536706782646 hm5C_site_19021 DeepMRMD:1;iRNA_m5C:0.999536706782646 19022 chr12 6619500 6619500 1 + C T BRCA 6619511 + 6619491 6619531 41 ATGTGTGTTCACTGTAAGGGCAGACCAACAAGAACTTTTTC ATGTGTGTTTACTGTAAGGGCAGACCAACAAGAACTTTTTC < 41bp 1 0.105642855791083 1 0.357156366109848 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619511 chr12:6619500 . . 0 10 hm5C_associated_SNPs_17606 0 0 1 1 0 unknown 1 0.5002316439218 1 0.999536712156399 hm5C_site_19022 DeepMRMD:1;iRNA_m5C:0.999536712156399 19023 chr12 6619500 6619500 1 + C T BRCA 6619515 + 6619495 6619535 41 GTGTTCACTGTAAGGGCAGACCAACAAGAACTTTTTCCTAC GTGTTTACTGTAAGGGCAGACCAACAAGAACTTTTTCCTAC < 41bp 1 0.052281218509063 1 0.204521417617798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619515 chr12:6619500 . . 0 6 hm5C_associated_SNPs_17607 0 0 1 1 0 unknown 1 0.500231643921223 1 0.999536712157555 hm5C_site_19023 DeepMRMD:1;iRNA_m5C:0.999536712157555 19024 chr12 6619500 6619500 1 + C T BRCA 6619516 + 6619496 6619536 41 TGTTCACTGTAAGGGCAGACCAACAAGAACTTTTTCCTACT TGTTTACTGTAAGGGCAGACCAACAAGAACTTTTTCCTACT < 41bp 1 0.476032966291178 1 0.571803748607635 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619516 chr12:6619500 . . 0 5 hm5C_associated_SNPs_17608 0 0 1 1 0 unknown 1 0.500231643921144 0.85639250278473 0.999536712157712 hm5C_site_19024 DeepMRMD:0.85639250278473;iRNA_m5C:0.999536712157712 19025 chr12 6619500 6619500 1 + C T BRCA 6619519 + 6619499 6619539 41 TCACTGTAAGGGCAGACCAACAAGAACTTTTTCCTACTTTT TTACTGTAAGGGCAGACCAACAAGAACTTTTTCCTACTTTT < 41bp 1 0.425181851886804 1 0.296250522136688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCARNA10 ENSG00000239002 ncRNA_exonic Human snoRNA chr12:6619519 chr12:6619500 . . 0 2 hm5C_associated_SNPs_17609 0 0 1 1 0 unknown 1 0.500231643913302 1 0.999536712173395 hm5C_site_19025 DeepMRMD:1;iRNA_m5C:0.999536712173395 19026 chr1 109643088 109643088 1 + G A BRCA 109643068 + 109643048 109643088 41 AGCTCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG AGCTCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCA < 41bp 1 0.149581362581603 1 0.199921041727066 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643068 chr1:109643088 . . 0 41 hm5C_associated_SNPs_17610 0 0 1 0 0 unknown 1 0.5002316439211 1 0.999536712157801 hm5C_site_19026 DeepMRMD:1;iRNA_m5C:0.999536712157801 19027 chr1 109643088 109643088 1 + G A BRCA 109643093 + 109643073 109643113 41 GGGGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCT GGGGCGCTGTGCAGCAAGGCCCCTTAGGCGGCGGCCACGCT < 41bp 1 0.146246964765322 1 0.031078964471817 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643093 chr1:109643088 . . 0 16 hm5C_associated_SNPs_17613 0 0 1 0 0 unknown 1 0.500231643908188 1 0.999536712183624 hm5C_site_19027 DeepMRMD:1;iRNA_m5C:0.999536712183624 19028 chr1 109643088 109643088 1 + G A BRCA 109643095 + 109643075 109643115 41 GGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCTGT GGCGCTGTGCAGCAAGGCCCCTTAGGCGGCGGCCACGCTGT < 41bp 1 0.638562071500961 1 0.100503385066986 experiment 0.722875856998078 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643095 chr1:109643088 . . 0 14 hm5C_associated_SNPs_17614 0 0 1 0 0 unknown 1 0.500231545052687 1 0.999536909894627 hm5C_site_19028 DeepMRMD:1;iRNA_m5C:0.999536909894627 19029 chr1 109643088 109643088 1 + G A BRCA 109643104 + 109643084 109643124 41 CAGCGAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGA CAGCAAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGA < 41bp 1 0.681811929011704 1 0.675668120384216 experiment 0.636376141976591 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643104 chr1:109643088 . . 0 5 hm5C_associated_SNPs_17615 0 0 1 0 0 unknown 1 0.500231643921092 0.648663759231568 0.999536712157815 hm5C_site_19029 DeepMRMD:0.648663759231568;iRNA_m5C:0.999536712157815 19030 chr1 109643088 109643088 1 + G A BRCA 109643108 + 109643088 109643128 41 GAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGAGGTC AAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGAGGTC < 41bp 1 0.63729690900432 1 0.53125 experiment 0.72540618199136 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643108 chr1:109643088 . . 0 1 hm5C_associated_SNPs_17616 0 0 1 0 0 unknown 1 0.500231643921092 0.9375 0.999536712157815 hm5C_site_19030 DeepMRMD:0.9375;iRNA_m5C:0.999536712157815 19031 chr19 35530584 35530584 1 + G A BRCA 35530583 + 35530563 35530603 41 TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAAT TGAAAGCAAAGAGAACTGCACAGGCGTCCAGGTGGCCGAAT < 41bp 1 0.588323143038936 1 0.814554333686829 experiment 0.823353713922127 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530583 chr19:35530584 synonymous SNV . 0 22 hm5C_associated_SNPs_17617 0 0 0 0 2 exosome 1 0.500231643962258 0.370891332626342 0.999536712075484 hm5C_site_19031 DeepMRMD:0.370891332626342;iRNA_m5C:0.999536712075484 19032 chr1 145115815 145115815 1 + A C BRCA 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTACTTGAACATGCATTCCCCTTATGCCAAACTT < 41bp 1 0.0454418953872752 1 0.0498558878898621 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115815 . . 0 27 hm5C_associated_SNPs_17618 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19032 DeepMRMD:1;iRNA_m5C:0.999536712157815 19033 chr1 156142776 156142776 1 + C G BRCA 156142796 + 156142776 156142816 41 CTTGTCATGTACCTGGGAACCAGTGAGTAAAGAGTTCCGGG GTTGTCATGTACCTGGGAACCAGTGAGTAAAGAGTTCCGGG < 41bp 1 0.565749228563393 1 0.800833582878113 experiment 0.868501542873213 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142796 chr1:156142776 nonsynonymous SNV 0.902 0 1 hm5C_associated_SNPs_17619 0 0 0 0 1 exosome 1 0.500231643932241 0.398332834243774 0.999536712135518 hm5C_site_19033 DeepMRMD:0.398332834243774;iRNA_m5C:0.999536712135518 19034 chr15 44085898 44085898 1 + C G BRCA 44085902 + 44085882 44085922 41 CAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGATCAT CAGTGCCCCATCATCTGTACCCCCAGGGACTCGGAGATCAT < 41bp 1 0.30665305247507 1 0.0751934051513672 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085902 chr15:44085898 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_17620 0 0 1 0 1 Cytosol 1 0.500231625518762 1 0.999536748962477 hm5C_site_19034 DeepMRMD:1;iRNA_m5C:0.999536748962477 19035 chr1 31905840 31905840 1 + T G BRCA 31905832 + 31905812 31905852 41 AGTCTGCGCTCCTCAGACCACCGGCAGGTGAACAGCCTGAT AGTCTGCGCTCCTCAGACCACCGGCAGGGGAACAGCCTGAT < 41bp 1 0.348322245161596 1 0.581021666526794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31905832 chr1:31905840 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_17621 0 0 1 0 1 Endoplasmic reticulum 1 0.500231637270101 0.837956666946412 0.999536725459798 hm5C_site_19035 DeepMRMD:0.837956666946412;iRNA_m5C:0.999536725459798 19036 chr1 31898637 31898637 1 + G A BRCA 31898654 + 31898634 31898674 41 TTCGGCGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT TTCAGCGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT < 41bp 1 0.13142360107639 1 0.469720602035522 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31898654 chr1:31898637 nonsynonymous SNV 0.968 4 4 hm5C_associated_SNPs_17622 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920867 1 0.999536712158266 hm5C_site_19036 DeepMRMD:1;iRNA_m5C:0.999536712158266 19037 chr3 9517426 9517426 1 + C G BRCA 9517422 + 9517402 9517442 41 GGTATTTTAGCAGCCAGCCACATTCTGGAAACAGCACTGGC GGTATTTTAGCAGCCAGCCACATTGTGGAAACAGCACTGGC < 41bp 1 0.180142605948629 1 0.0923818945884705 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9517422 chr3:9517426 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_17623 0 0 1 0 0 Nucleus 1 0.500508831769048 1 0.998982336461904 hm5C_site_19037 DeepMRMD:1;iRNA_m5C:0.998982336461904 19038 chr7 101960937 101960937 1 + G A BRCA 101960919 + 101960899 101960939 41 CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTCGCA CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTCACA < 41bp 1 0.465104945015882 1 0.593263208866119 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101960919 chr7:101960937 nonsynonymous SNV 0.533 5 39 hm5C_associated_SNPs_17624 0 0 0 0 1 nucleoplasm 1 0.500231643921092 0.813473582267762 0.999536712157815 hm5C_site_19038 DeepMRMD:0.813473582267762;iRNA_m5C:0.999536712157815 19039 chr19 38610164 38610164 1 + C G BRCA 38610159 + 38610139 38610179 41 GCCGAAAACTGTGTCTCCAACACCCCCATCGACTCCACCGG GCCGAAAACTGTGTCTCCAACACCCGCATCGACTCCACCGG < 41bp 1 0.186952557135105 1 0.170436561107635 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38610159 chr19:38610164 nonsynonymous SNV 0.986 2 26 hm5C_associated_SNPs_17625 0 0 1 0 0 Ribosome 1 0.500231643952836 1 0.999536712094328 hm5C_site_19039 DeepMRMD:1;iRNA_m5C:0.999536712094328 19040 chr19 38655323 38655323 1 + C T BRCA 38655333 + 38655313 38655353 41 GGCCAAGGCTCCACGGCCCGCCAAGCCACACAAGCCCCCTG GGCCAAGGCTTCACGGCCCGCCAAGCCACACAAGCCCCCTG < 41bp 1 0.133581233527052 1 0.450175404548645 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38655333 chr19:38655323 nonsynonymous SNV 0.096 0 11 hm5C_associated_SNPs_17626 0 0 0 0 0 Ribosome 1 0.500231643878227 1 0.999536712243547 hm5C_site_19040 DeepMRMD:1;iRNA_m5C:0.999536712243547 19041 chr11 62656079 62656079 1 + C G BRCA 62656090 + 62656070 62656110 41 CAGCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAACG CAGCCAGGCGGTGAGGAGGGCTCCCCTCTTGAGCTGGAACG < 41bp 1 0.30297974645544 1 0.190733313560486 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62656090 chr11:62656079 nonsynonymous SNV 0.623 2 10 hm5C_associated_SNPs_17628 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19041 DeepMRMD:1;iRNA_m5C:0.999536712157815 19042 chr11 62656079 62656079 1 + C G BRCA 62656092 + 62656072 62656112 41 GCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAACGCC GCCAGGCGGTGAGGAGGGCTCCCCTCTTGAGCTGGAACGCC < 41bp 1 0.432464704937968 1 0.0640538334846497 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62656092 chr11:62656079 nonsynonymous SNV 0.623 2 8 hm5C_associated_SNPs_17629 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19042 DeepMRMD:1;iRNA_m5C:0.999536712157815 19043 chrX 135126695 135126695 1 + A T BRCA 135126705 + 135126685 135126725 41 TTCTACTGTGAACACTGAACCGGCCACATCCAGCGCCCCAA TTCTACTGTGTACACTGAACCGGCCACATCCAGCGCCCCAA < 41bp 1 0.449010486109524 1 0.699419021606445 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135126705 chrX:135126695 nonsynonymous SNV 0.997 1 11 hm5C_associated_SNPs_17631 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921166 0.60116195678711 0.999536712157667 hm5C_site_19043 DeepMRMD:0.60116195678711;iRNA_m5C:0.999536712157667 19044 chrX 135126700 135126700 1 + T A BRCA 135126705 + 135126685 135126725 41 TTCTACTGTGAACACTGAACCGGCCACATCCAGCGCCCCAA TTCTACTGTGAACACAGAACCGGCCACATCCAGCGCCCCAA < 41bp 1 0.454159442634623 1 0.559373676776886 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135126705 chrX:135126700 synonymous SNV . 0 16 hm5C_associated_SNPs_17632 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921332 0.881252646446228 0.999536712157336 hm5C_site_19044 DeepMRMD:0.881252646446228;iRNA_m5C:0.999536712157336 19045 chr4 146467997 146467997 1 + G C BRCA 146468006 + 146467986 146468026 41 TCCAACAATAAGAACCGTTTCTGCCTTGGGCTGCTCTCCAA TCCAACAATAACAACCGTTTCTGCCTTGGGCTGCTCTCCAA < 41bp 1 0.667404029563443 1 0.121126592159271 experiment 0.665191940873113 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146468006 chr4:146467997 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_17633 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19045 DeepMRMD:1;iRNA_m5C:0.999536712157815 19046 chr15 67073661 67073661 1 + G A BRCA 67073651 + 67073631 67073671 41 CTGGACGCGCCCGGCGGCCGCGCCCTGGTCGTGCGCAAGGT CTGGACGCGCCCGGCGGCCGCGCCCTGGTCATGCGCAAGGT < 41bp 1 0.501226407333946 1 0.302992343902588 experiment 0.997547185332109 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SMAD6 ENSG00000137834 CDS Human protein_coding chr15:67073651 chr15:67073661 nonsynonymous SNV 0.997 5 31 hm5C_associated_SNPs_17634 0 0 1 0 0 Cytosol 1 0.500231643912255 1 0.999536712175489 hm5C_site_19046 DeepMRMD:1;iRNA_m5C:0.999536712175489 19047 chr9 72913049 72913049 1 + G C BRCA 72913039 + 72913019 72913059 41 GCCCCAGATTGATGCCATTACAAATGATCTGAGACGGATTC GCCCCAGATTGATGCCATTACAAATGATCTCAGACGGATTC < 41bp 1 0.504104660245402 1 0.185905575752258 experiment 0.991790679509197 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC5 ENSG00000198887 CDS Human protein_coding chr9:72913039 chr9:72913049 synonymous SNV . 0 31 hm5C_associated_SNPs_17635 0 0 1 0 0 Cytosol 1 0.50023164392114 1 0.99953671215772 hm5C_site_19047 DeepMRMD:1;iRNA_m5C:0.99953671215772 19048 chr17 18167940 18167940 1 + C T BRCA 18167953 + 18167933 18167973 41 TGCTCATCGGCAGCCTGGAGCAGGCCAGCCTGCCCTGCCAC TGCTCATTGGCAGCCTGGAGCAGGCCAGCCTGCCCTGCCAC < 41bp 1 0.674045840283989 1 0.901454448699951 experiment 0.651908319432021 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MIEF2 ENSG00000177427 CDS Human protein_coding chr17:18167953 chr17:18167940 synonymous SNV . 0 8 hm5C_associated_SNPs_17636 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643925302 0.197091102600098 0.999536712149395 hm5C_site_19048 DeepMRMD:0.197091102600098;iRNA_m5C:0.999536712149395 19049 chr17 7478063 7478063 1 + G C BRCA 7478057 + 7478037 7478077 41 TGACCTGGGTAGAGTGGCATCTGGTTGGTGATGCCCATCTC TGACCTGGGTAGAGTGGCATCTGGTTCGTGATGCCCATCTC < 41bp 1 0.552720742606641 1 0.520241260528564 experiment 0.894558514786718 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA48 ENSG00000209582 ncRNA_exonic Human snoRNA chr17:7478057 chr17:7478063 . . 0 27 hm5C_associated_SNPs_17637 0 0 1 0 1 unknown 1 0.500317769153284 0.959517478942872 0.999364461693432 hm5C_site_19049 DeepMRMD:0.959517478942872;iRNA_m5C:0.999364461693432 19050 chr17 7478063 7478063 1 + G C BRCA 7478071 + 7478051 7478091 41 TGGCATCTGGTTGGTGATGCCCATCTCATATCAGCCAGGGA TGGCATCTGGTTCGTGATGCCCATCTCATATCAGCCAGGGA < 41bp 1 0.0187520180800969 1 0.182006597518921 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA48 ENSG00000209582 ncRNA_exonic Human snoRNA chr17:7478071 chr17:7478063 . . 0 13 hm5C_associated_SNPs_17638 0 0 1 0 1 unknown 1 0.500210619826122 1 0.999578760347755 hm5C_site_19050 DeepMRMD:1;iRNA_m5C:0.999578760347755 19051 chr17 7478063 7478063 1 + G C BRCA 7478077 + 7478057 7478097 41 CTGGTTGGTGATGCCCATCTCATATCAGCCAGGGACAAAGC CTGGTTCGTGATGCCCATCTCATATCAGCCAGGGACAAAGC < 41bp 1 0.0750032814161344 1 0.100854933261871 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA48 ENSG00000209582 ncRNA_exonic Human snoRNA chr17:7478077 chr17:7478063 . . 0 7 hm5C_associated_SNPs_17639 0 0 1 0 1 unknown 1 0.50016901742187 1 0.999661965156259 hm5C_site_19051 DeepMRMD:1;iRNA_m5C:0.999661965156259 19052 chr17 7481290 7481290 1 + C G BRCA 7481276 + 7481256 7481296 41 CAAAGGCAGAAGGGAGGATCCAAGGTGATTCCCTCTCCAAG CAAAGGCAGAAGGGAGGATCCAAGGTGATTCCCTGTCCAAG < 41bp 1 0.573573070281181 1 0.705435156822205 experiment 0.852853859437638 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA67 ENSG00000264772 ncRNA_exonic Human processed_transcript chr17:7481276 chr17:7481290 . . 0 35 hm5C_associated_SNPs_17640 0 0 1 0 0 unknown 1 0.500231643921092 0.58912968635559 0.999536712157815 hm5C_site_19052 DeepMRMD:0.58912968635559;iRNA_m5C:0.999536712157815 19053 chr17 7481290 7481290 1 + C G BRCA 7481292 + 7481272 7481312 41 GATCCAAGGTGATTCCCTCTCCAAGGGGACATCAGTGCCTC GATCCAAGGTGATTCCCTGTCCAAGGGGACATCAGTGCCTC < 41bp 1 0.341822113440278 1 0.894575178623199 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA67 ENSG00000264772 ncRNA_exonic Human processed_transcript chr17:7481292 chr17:7481290 . . 0 19 hm5C_associated_SNPs_17641 0 0 1 0 0 unknown 1 0.500231665920405 0.210849642753602 0.999536668159189 hm5C_site_19053 DeepMRMD:0.210849642753602;iRNA_m5C:0.999536668159189 19054 chr17 7481290 7481290 1 + C G BRCA 7481301 + 7481281 7481321 41 TGATTCCCTCTCCAAGGGGACATCAGTGCCTCTCAGGAAAG TGATTCCCTGTCCAAGGGGACATCAGTGCCTCTCAGGAAAG < 41bp 1 0.142000859792758 1 0.138337463140488 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA67 ENSG00000264772 ncRNA_exonic Human processed_transcript chr17:7481301 chr17:7481290 . . 0 10 hm5C_associated_SNPs_17642 0 0 1 0 0 unknown 1 0.500231643921029 1 0.999536712157943 hm5C_site_19054 DeepMRMD:1;iRNA_m5C:0.999536712157943 19055 chr19 49993282 49993282 1 + C T BRCA 49993267 + 49993247 49993287 41 CATCTTTCGTTTGAGTCTCACGGCCATGAGATCAACCCCAT CATCTTTCGTTTGAGTCTCACGGCCATGAGATCAATCCCAT < 41bp 1 0.361611070483946 1 0.774172902107239 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993267 chr19:49993282 . . 0 36 hm5C_associated_SNPs_17643 0 0 1 0 0 unknown 1 0.500231644319469 0.451654195785522 0.999536711361062 hm5C_site_19055 DeepMRMD:0.451654195785522;iRNA_m5C:0.999536711361062 19056 chr19 49993282 49993282 1 + C T BRCA 49993279 + 49993259 49993299 41 GAGTCTCACGGCCATGAGATCAACCCCATGCACCGCTCTGA GAGTCTCACGGCCATGAGATCAATCCCATGCACCGCTCTGA < 41bp 1 0.102959100373483 1 0.122592985630035 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993279 chr19:49993282 . . 0 24 hm5C_associated_SNPs_17644 0 0 1 0 0 unknown 1 0.500231642355609 1 0.999536715288782 hm5C_site_19056 DeepMRMD:1;iRNA_m5C:0.999536715288782 19057 chr19 49993282 49993282 1 + C T BRCA 49993283 + 49993263 49993303 41 CTCACGGCCATGAGATCAACCCCATGCACCGCTCTGAGACC CTCACGGCCATGAGATCAATCCCATGCACCGCTCTGAGACC < 41bp 1 0.159335709782927 1 0.0551220178604126 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993283 chr19:49993282 . . 0 20 hm5C_associated_SNPs_17645 0 0 1 0 0 unknown 1 0.50023194044693 1 0.99953611910614 hm5C_site_19057 DeepMRMD:1;iRNA_m5C:0.99953611910614 19058 chr19 49993282 49993282 1 + C T BRCA 49993284 + 49993264 49993304 41 TCACGGCCATGAGATCAACCCCATGCACCGCTCTGAGACCT TCACGGCCATGAGATCAATCCCATGCACCGCTCTGAGACCT < 41bp 1 0.139977836552453 1 0.177679687738419 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993284 chr19:49993282 . . 0 19 hm5C_associated_SNPs_17646 0 0 1 0 0 unknown 1 0.500231733751527 1 0.999536532496947 hm5C_site_19058 DeepMRMD:1;iRNA_m5C:0.999536532496947 19059 chr19 49993282 49993282 1 + C T BRCA 49993285 + 49993265 49993305 41 CACGGCCATGAGATCAACCCCATGCACCGCTCTGAGACCTG CACGGCCATGAGATCAATCCCATGCACCGCTCTGAGACCTG < 41bp 1 0.190225572086639 1 0.0888984799385071 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993285 chr19:49993282 . . 0 18 hm5C_associated_SNPs_17647 0 0 1 0 0 unknown 1 0.500231775653623 1 0.999536448692754 hm5C_site_19059 DeepMRMD:1;iRNA_m5C:0.999536448692754 19060 chr19 49993282 49993282 1 + C T BRCA 49993289 + 49993269 49993309 41 GCCATGAGATCAACCCCATGCACCGCTCTGAGACCTGCCAG GCCATGAGATCAATCCCATGCACCGCTCTGAGACCTGCCAG < 41bp 1 0.62936565997159 1 0.129333168268204 experiment 0.74126868005682 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993289 chr19:49993282 . . 0 14 hm5C_associated_SNPs_17648 0 0 1 0 0 unknown 1 0.500234602337174 1 0.999530795325653 hm5C_site_19060 DeepMRMD:1;iRNA_m5C:0.999530795325653 19061 chr19 49993282 49993282 1 + C T BRCA 49993291 + 49993271 49993311 41 CATGAGATCAACCCCATGCACCGCTCTGAGACCTGCCAGCC CATGAGATCAATCCCATGCACCGCTCTGAGACCTGCCAGCC < 41bp 1 0.260852416927357 1 0.0498338341712952 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993291 chr19:49993282 . . 0 12 hm5C_associated_SNPs_17649 0 0 1 0 0 unknown 1 0.500231668724065 1 0.99953666255187 hm5C_site_19061 DeepMRMD:1;iRNA_m5C:0.99953666255187 19062 chr19 49993282 49993282 1 + C T BRCA 49993292 + 49993272 49993312 41 ATGAGATCAACCCCATGCACCGCTCTGAGACCTGCCAGCCA ATGAGATCAATCCCATGCACCGCTCTGAGACCTGCCAGCCA < 41bp 1 0.160354350520205 1 0.0719022154808044 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993292 chr19:49993282 . . 0 11 hm5C_associated_SNPs_17650 0 0 1 0 0 unknown 1 0.500276511463113 1 0.999446977073774 hm5C_site_19062 DeepMRMD:1;iRNA_m5C:0.999446977073774 19063 chr19 49993282 49993282 1 + C T BRCA 49993294 + 49993274 49993314 41 GAGATCAACCCCATGCACCGCTCTGAGACCTGCCAGCCACT GAGATCAATCCCATGCACCGCTCTGAGACCTGCCAGCCACT < 41bp 1 0.173534863325891 1 0.323293566703796 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993294 chr19:49993282 . . 0 9 hm5C_associated_SNPs_17651 0 0 1 0 0 unknown 1 0.500231535603146 1 0.999536928793707 hm5C_site_19063 DeepMRMD:1;iRNA_m5C:0.999536928793707 19064 chr19 49993282 49993282 1 + C T BRCA 49993296 + 49993276 49993316 41 GATCAACCCCATGCACCGCTCTGAGACCTGCCAGCCACTCT GATCAATCCCATGCACCGCTCTGAGACCTGCCAGCCACTCT < 41bp 1 0.491785850646695 1 0.468797147274017 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD32A ENSG00000201675 ncRNA_exonic Human snoRNA chr19:49993296 chr19:49993282 . . 0 7 hm5C_associated_SNPs_17652 0 0 1 0 0 unknown 1 0.500231644830173 1 0.999536710339655 hm5C_site_19064 DeepMRMD:1;iRNA_m5C:0.999536710339655 19065 chr17 27047625 27047625 1 + A G BRCA 27047615 + 27047595 27047635 41 CCTGACACTTGTGATGTCTTCAAAGGAACCACTGATGCACC CCTGACACTTGTGATGTCTTCAAAGGAACCGCTGATGCACC < 41bp 1 0.609927011866498 1 0.876006364822388 experiment 0.780145976267005 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD42B ENSG00000238423 ncRNA_exonic Human snoRNA chr17:27047615 chr17:27047625 . . 0 31 hm5C_associated_SNPs_17653 0 0 1 1 0 unknown 1 0.500231643926646 0.247987270355224 0.999536712146708 hm5C_site_19065 DeepMRMD:0.247987270355224;iRNA_m5C:0.999536712146708 19066 chr17 27047625 27047625 1 + A G BRCA 27047623 + 27047603 27047643 41 TTGTGATGTCTTCAAAGGAACCACTGATGCACCTGTGGCCA TTGTGATGTCTTCAAAGGAACCGCTGATGCACCTGTGGCCA < 41bp 1 0.286897865927137 1 0.08964803814888 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD42B ENSG00000238423 ncRNA_exonic Human snoRNA chr17:27047623 chr17:27047625 . . 0 23 hm5C_associated_SNPs_17654 0 0 1 1 0 unknown 1 0.500231643886374 1 0.999536712227251 hm5C_site_19066 DeepMRMD:1;iRNA_m5C:0.999536712227251 19067 chr17 27047625 27047625 1 + A G BRCA 27047634 + 27047614 27047654 41 TCAAAGGAACCACTGATGCACCTGTGGCCAGGGTGGCCCAC TCAAAGGAACCGCTGATGCACCTGTGGCCAGGGTGGCCCAC < 41bp 1 0.317479069287887 1 0.0275797843933105 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD42B ENSG00000238423 ncRNA_exonic Human snoRNA chr17:27047634 chr17:27047625 . . 0 12 hm5C_associated_SNPs_17656 0 0 1 1 0 unknown 1 0.500231662614293 1 0.999536674771413 hm5C_site_19067 DeepMRMD:1;iRNA_m5C:0.999536674771413 19068 chr17 27049656 27049656 1 + C T BRCA 27049668 + 27049648 27049688 41 TGGTACCTCGTTGTCTGATGCACCTAGGCTCTCCTGGCTCT TGGTACCTTGTTGTCTGATGCACCTAGGCTCTCCTGGCTCT < 41bp 1 0.295541211337443 1 0.14081221818924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD4A ENSG00000238578;ENSG00000264577 ncRNA_exonic Human other chr17:27049668 chr17:27049656 . . 0 9 hm5C_associated_SNPs_17657 0 0 1 0 0 unknown 1 0.500231643700144 1 0.999536712599713 hm5C_site_19068 DeepMRMD:1;iRNA_m5C:0.999536712599713 19069 chr17 27049656 27049656 1 + C T BRCA 27049670 + 27049650 27049690 41 GTACCTCGTTGTCTGATGCACCTAGGCTCTCCTGGCTCTGG GTACCTTGTTGTCTGATGCACCTAGGCTCTCCTGGCTCTGG < 41bp 1 0.0666111203314629 1 0.0962009429931641 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD4A ENSG00000238578;ENSG00000264577 ncRNA_exonic Human other chr17:27049670 chr17:27049656 . . 0 7 hm5C_associated_SNPs_17658 0 0 1 0 0 unknown 1 0.500232116153838 1 0.999535767692324 hm5C_site_19069 DeepMRMD:1;iRNA_m5C:0.999535767692324 19070 chr17 46189979 46189979 1 + A G BRCA 46189985 + 46189965 46190005 41 CCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT CCGAGTGCAGAATGGGGGCTCCTGGAACTCTTATGTGGATT < 41bp 1 0.143606718279256 1 0.217233508825302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 CDS Human protein_coding chr17:46189985 chr17:46189979 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_17659 0 0 1 0 2 Cytosol 1 0.500231643914074 1 0.999536712171851 hm5C_site_19070 DeepMRMD:1;iRNA_m5C:0.999536712171851 19071 chr11 64803030 64803030 1 + G C BRCA 64803026 + 64803006 64803046 41 TCCAGCCCTGCCCAGGAGGCCCTGGATCTCCTCTTTAACTG TCCAGCCCTGCCCAGGAGGCCCTGCATCTCCTCTTTAACTG < 41bp 1 0.0989631568225501 1 0.0672701001167297 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64803026 chr11:64803030 nonsynonymous SNV 0.833 3 25 hm5C_associated_SNPs_17660 0 0 1 0 1 Ribosome 1 0.50023164392243 1 0.99953671215514 hm5C_site_19071 DeepMRMD:1;iRNA_m5C:0.99953671215514 19072 chr7 44047341 44047341 1 + G A BRCA 44047343 - 44047323 44047363 41 GAAAGGCGAGCGCGATCTCGCGCCCACACCCAGTGCTCTGG GAAAGGCGAGCGCGATCTCGCGTCCACACCCAGTGCTCTGG < 41bp 1 0.144001834004321 1 0.767761826515198 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDYE1 ENSG00000136206 CDS Human protein_coding chr7:44047343 chr7:44047341 nonsynonymous SNV 0.020 0 23 hm5C_associated_SNPs_17661 0 0 0 0 0 exosome 1 0.500231643667094 0.464476346969604 0.999536712665811 hm5C_site_19072 DeepMRMD:0.464476346969604;iRNA_m5C:0.999536712665811 19073 chr1 16255132 16255132 1 + G C BRCA 16255122 + 16255102 16255142 41 AAAGACAGATAAAGAACGAACTTTTGATCCGGAGAGAGTGG AAAGACAGATAAAGAACGAACTTTTGATCCCGAGAGAGTGG < 41bp 1 0.0266761006590659 1 0.0962590575218201 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16255122 chr1:16255132 synonymous SNV . 0 31 hm5C_associated_SNPs_17662 0 0 1 0 0 Endoplasmic reticulum 1 0.500229509577349 1 0.999540980845302 hm5C_site_19073 DeepMRMD:1;iRNA_m5C:0.999540980845302 19074 chr1 16255132 16255132 1 + G C BRCA 16255130 + 16255110 16255150 41 ATAAAGAACGAACTTTTGATCCGGAGAGAGTGGAGAGAGAG ATAAAGAACGAACTTTTGATCCCGAGAGAGTGGAGAGAGAG < 41bp 1 0.420653536877918 1 0.23229643702507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16255130 chr1:16255132 synonymous SNV . 0 23 hm5C_associated_SNPs_17663 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19074 DeepMRMD:1;iRNA_m5C:0.999536712157815 19075 chr1 16262320 16262320 1 + G A BRCA 16262304 + 16262284 16262324 41 GTACCGACTGCACCCCTATACTGTGCCACGGGATGTGAGGA GTACCGACTGCACCCCTATACTGTGCCACGGGATGTAAGGA < 41bp 1 0.161475386657581 1 0.344477444887161 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16262304 chr1:16262320 synonymous SNV . 0 37 hm5C_associated_SNPs_17664 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_19075 DeepMRMD:1;iRNA_m5C:0.999536712157815 19076 chr16 30736382 30736382 1 + A C BRCA 30736401 + 30736381 30736421 41 CACCTCGTTCCCCTTTTTATCTGGTAAGTTTTACTTCCTCA CCCCTCGTTCCCCTTTTTATCTGGTAAGTTTTACTTCCTCA < 41bp 1 0.437432195146538 1 0.251325130462646 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30736401 chr16:30736382 synonymous SNV . 0 2 hm5C_associated_SNPs_17665 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19076 DeepMRMD:1;iRNA_m5C:0.999536712157815 19077 chr1 144014068 144014068 1 + T C BRCA 144014050 + 144014030 144014070 41 ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACACGC < 41bp 1 0.202889132022592 1 0.346023440361023 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014050 chr1:144014068 . . 0 39 hm5C_associated_SNPs_17666 0 0 1 0 1 unknown 1 0.500231643696757 1 0.999536712606485 hm5C_site_19077 DeepMRMD:1;iRNA_m5C:0.999536712606485 19078 chr1 144014068 144014068 1 + T C BRCA 144014052 + 144014032 144014072 41 CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACACGCAG < 41bp 1 0.265070604577234 1 0.5405313372612 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014052 chr1:144014068 . . 0 37 hm5C_associated_SNPs_17667 0 0 1 0 1 unknown 1 0.50023163870541 0.9189373254776 0.99953672258918 hm5C_site_19078 DeepMRMD:0.9189373254776;iRNA_m5C:0.99953672258918 19079 chr1 24996733 24996733 1 + C T BRCA 24996751 + 24996731 24996771 41 ACCGTCTACAAACTGGTCACCAGCTGTACCGGTCAAAAAGG ACTGTCTACAAACTGGTCACCAGCTGTACCGGTCAAAAAGG < 41bp 1 0.56995742725009 1 0.547226428985596 experiment 0.86008514549982 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996751 chr1:24996733 nonsynonymous SNV 0.971 2 3 hm5C_associated_SNPs_17668 0 0 1 0 0 Cytosol 1 0.500231643921092 0.905547142028808 0.999536712157816 hm5C_site_19079 DeepMRMD:0.905547142028808;iRNA_m5C:0.999536712157816 19080 chr7 100485916 100485916 1 + C T BRCA 100485923 + 100485903 100485943 41 CACAGGAGGCCCTCCATACCCCCATGCCCCGTATGGTGCTG CACAGGAGGCCCTTCATACCCCCATGCCCCGTATGGTGCTG < 41bp 1 0.401818975097635 1 0.319004565477371 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100485923 chr7:100485916 nonsynonymous SNV 0.961 1 14 hm5C_associated_SNPs_17669 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19080 DeepMRMD:1;iRNA_m5C:0.999536712157815 19081 chr12 104056685 104056685 1 + G A BRCA 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCCAAAAATGGCCAAATTTACACACTGACAGG < 41bp 1 0.121947281488254 1 0.212298691272736 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056685 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_17670 0 0 0 0 2 nucleoplasm 1 0.500231071440356 1 0.999537857119288 hm5C_site_19081 DeepMRMD:1;iRNA_m5C:0.999537857119288 19082 chr19 15223341 15223341 1 + A G BRCA 15223360 + 15223340 15223380 41 CACCACATCGAGGTGCTGCACTACCTGCTGCAGTCTTGGCC CGCCACATCGAGGTGCTGCACTACCTGCTGCAGTCTTGGCC < 41bp 1 0.239995293834572 1 0.109257221221924 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15223360 chr19:15223341 nonsynonymous SNV 0.997 0 2 hm5C_associated_SNPs_17671 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_19082 DeepMRMD:1;iRNA_m5C:0.999536712157815 19083 chr19 15222237 15222237 1 + C G BRCA 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATGAATGT < 41bp 1 0.0476358352268898 1 0.0535309314727783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222237 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_17672 0 0 0 0 1 exosome 1 0.500231643954008 1 0.999536712091985 hm5C_site_19083 DeepMRMD:1;iRNA_m5C:0.999536712091985 19084 chr14 64445702 64445702 1 + A C BRCA 64445696 + 64445676 64445716 41 TGGAACATTAAATATGGGAGCAGAGAATCTGTGGAATTATT TGGAACATTAAATATGGGAGCAGAGACTCTGTGGAATTATT < 41bp 1 0.0777892723834397 1 0.382619023323059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64445696 chr14:64445702 nonsynonymous SNV 0.982 0 27 hm5C_associated_SNPs_17673 0 0 1 0 1 Nucleus 1 0.500231588962419 1 0.999536822075163 hm5C_site_19084 DeepMRMD:1;iRNA_m5C:0.999536822075163 19085 chr2 160031601 160031601 1 + A G BRCA 160031614 + 160031594 160031634 41 AGCCCCAACTACAGAGCATGCTGAGCCTCCGATCCTGTGTG AGCCCCAGCTACAGAGCATGCTGAGCCTCCGATCCTGTGTG < 41bp 1 0.555160634183618 1 0.28339010477066 experiment 0.889678731632763 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160031614 chr2:160031601 synonymous SNV . 0 8 hm5C_associated_SNPs_17674 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19085 DeepMRMD:1;iRNA_m5C:0.999536712157815 19086 chr4 26622298 26622298 1 + G A BRCA 26622308 + 26622288 26622328 41 TGGTATACATGAGGAAAGCACAGGTTGGCTATTGTTCAATT TGGTATACATAAGGAAAGCACAGGTTGGCTATTGTTCAATT < 41bp 1 0.443091572817978 1 0.349998891353607 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26622308 chr4:26622298 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_17676 0 0 1 0 2 Endoplasmic reticulum 1 0.500232112739871 1 0.999535774520257 hm5C_site_19086 DeepMRMD:1;iRNA_m5C:0.999535774520257 19087 chr6 37280745 37280745 1 + G A BRCA 37280749 + 37280729 37280769 41 TCTCAAGACATGCTGCGAAGCATTGAGGCTGACAGCTTTTG TCTCAAGACATGCTGCAAAGCATTGAGGCTGACAGCTTTTG < 41bp 1 0.18759011474429 1 0.0741725862026215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37280749 chr6:37280745 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_17677 0 0 1 0 2 chromatin 1 0.50023173721718 1 0.99953652556564 hm5C_site_19087 DeepMRMD:1;iRNA_m5C:0.99953652556564 19088 chr12 64878170 64878170 1 + C G BRCA 64878177 + 64878157 64878197 41 GGCGACGCTTAGTCTTAGAACCTGGAAGGCTGGCACAACAT GGCGACGCTTAGTGTTAGAACCTGGAAGGCTGGCACAACAT < 41bp 1 0.393279782762969 1 0.466838121414185 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBK1 ENSG00000183735 CDS Human protein_coding chr12:64878177 chr12:64878170 synonymous SNV . 0 14 hm5C_associated_SNPs_17678 0 0 1 0 1 chromatin 1 0.500231643921088 1 0.999536712157823 hm5C_site_19088 DeepMRMD:1;iRNA_m5C:0.999536712157823 19089 chr15 57554331 57554331 1 + A C BRCA 57554318 + 57554298 57554338 41 ACTCATCGGGAAGACTCTGTCAGTCTCAATGGCAATCATTC ACTCATCGGGAAGACTCTGTCAGTCTCAATGGCCATCATTC < 41bp 1 0.25543291538326 1 0.374713838100433 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554318 chr15:57554331 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_17679 0 0 1 0 2 Cytosol 1 0.500232157022051 1 0.999535685955899 hm5C_site_19089 DeepMRMD:1;iRNA_m5C:0.999535685955899 19090 chr15 57554331 57554331 1 + A C BRCA 57554338 + 57554318 57554358 41 CAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCA CAGTCTCAATGGCCATCATTCAGTCCTGTCTAGTACAGTCA < 41bp 1 0.163693058635508 1 0.306455194950104 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554338 chr15:57554331 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_17680 0 0 1 0 2 Cytosol 1 0.500231643916768 1 0.999536712166463 hm5C_site_19090 DeepMRMD:1;iRNA_m5C:0.999536712166463 19091 chr15 57554331 57554331 1 + A C BRCA 57554343 + 57554323 57554363 41 TCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT TCAATGGCCATCATTCAGTCCTGTCTAGTACAGTCACTACT < 41bp 1 0.109144589215324 1 0.0318277478218079 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554343 chr15:57554331 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_17681 0 0 1 0 2 Cytosol 1 0.50023156625905 1 0.999536867481899 hm5C_site_19091 DeepMRMD:1;iRNA_m5C:0.999536867481899 19092 chr14 102901119 102901119 1 + C G BRCA 102901100 + 102901080 102901120 41 CCCCCTCCTGAACTCACTCACTGTGCCTTCCAGCCTCAGCT CCCCCTCCTGAACTCACTCACTGTGCCTTCCAGCCTCAGGT < 41bp 1 0.145274786577934 1 0.331058859825134 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102901100 chr14:102901119 nonsynonymous SNV 0.854 0 40 hm5C_associated_SNPs_17682 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19092 DeepMRMD:1;iRNA_m5C:0.999536712157815 19093 chr1 205238746 205238746 1 + G C BRCA 205238737 + 205238717 205238757 41 GGCAGTGCCACACTCGTCTCCAGCCCCAAGTATGGCAGCGA GGCAGTGCCACACTCGTCTCCAGCCCCAACTATGGCAGCGA < 41bp 1 0.244307937398033 1 0.463149636983871 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205238737 chr1:205238746 nonsynonymous SNV 0.993 4 30 hm5C_associated_SNPs_17683 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19093 DeepMRMD:1;iRNA_m5C:0.999536712157815 19094 chr12 124074976 124074976 1 + G A BRCA 124074965 + 124074945 124074985 41 GTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAGAAT GTAAAGCACGAACAGGAATACATGGAAGTCCAGGAGAGAAT < 41bp 1 0.61481941653655 1 0.286285936832428 experiment 0.770361166926899 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074965 chr12:124074976 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_17684 0 0 1 0 2 Ribosome 1 0.500231643920656 1 0.999536712158688 hm5C_site_19094 DeepMRMD:1;iRNA_m5C:0.999536712158688 19095 chr7 12269421 12269421 1 + T G BRCA 12269401 + 12269381 12269421 41 AAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATT AAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATG < 41bp 1 0.231780576608742 1 0.0449942052364349 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM106B ENSG00000106460 CDS Human protein_coding chr7:12269401 chr7:12269421 nonsynonymous SNV 0.974 0 41 hm5C_associated_SNPs_17685 0 0 1 0 1 Ribosome 1 0.50023164247698 1 0.99953671504604 hm5C_site_19095 DeepMRMD:1;iRNA_m5C:0.99953671504604 19096 chr6 44274744 44274744 1 + A G BRCA 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGCCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC < 41bp 1 0.467392721656051 1 0.81921660900116 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274744 nonsynonymous SNV 0.985 1 3 hm5C_associated_SNPs_17686 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.36156678199768 0.999536712157815 hm5C_site_19096 DeepMRMD:0.36156678199768;iRNA_m5C:0.999536712157815 19097 chr12 98926744 98926744 1 + G A BRCA 98926754 + 98926734 98926774 41 GGGCAGTACCGAACTACAGGCAGCTAAGAAAGTACATACTT GGGCAGTACCAAACTACAGGCAGCTAAGAAAGTACATACTT < 41bp 1 0.429381108388864 1 0.184283792972565 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98926754 chr12:98926744 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_17687 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19097 DeepMRMD:1;iRNA_m5C:0.999536712157815 19098 chr5 72187661 72187661 1 + C T BRCA 72187646 + 72187626 72187666 41 ATTGTAAATAGGAATATATTCAGATGCTAATGCCTCCACTG ATTGTAAATAGGAATATATTCAGATGCTAATGCCTTCACTG < 41bp 1 0.535886665608629 1 0.831857264041901 experiment 0.928226668782743 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187646 chr5:72187661 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_17688 0 0 1 0 2 Cytosol 1 0.500231839825279 0.336285471916198 0.999536320349441 hm5C_site_19098 DeepMRMD:0.336285471916198;iRNA_m5C:0.999536320349441 19099 chr5 72187661 72187661 1 + C T BRCA 72187652 + 72187632 72187672 41 AATAGGAATATATTCAGATGCTAATGCCTCCACTGATCCAG AATAGGAATATATTCAGATGCTAATGCCTTCACTGATCCAG < 41bp 1 0.198897584690302 1 0.0844723284244537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187652 chr5:72187661 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_17689 0 0 1 0 2 Cytosol 1 0.500231643924 1 0.999536712152 hm5C_site_19099 DeepMRMD:1;iRNA_m5C:0.999536712152 19100 chr5 72187661 72187661 1 + C T BRCA 72187658 + 72187638 72187678 41 AATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGG AATATATTCAGATGCTAATGCCTTCACTGATCCAGAAATGG < 41bp 1 0.00652781788151669 1 0.0898264944553375 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187658 chr5:72187661 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_17690 0 0 1 0 2 Cytosol 1 0.500231643919751 1 0.999536712160498 hm5C_site_19100 DeepMRMD:1;iRNA_m5C:0.999536712160498 19101 chr5 72187661 72187661 1 + C T BRCA 72187659 + 72187639 72187679 41 ATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGA ATATATTCAGATGCTAATGCCTTCACTGATCCAGAAATGGA < 41bp 1 0.170706313920258 1 0.323081076145172 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187659 chr5:72187661 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_17691 0 0 1 0 2 Cytosol 1 0.500231644354972 1 0.999536711290056 hm5C_site_19101 DeepMRMD:1;iRNA_m5C:0.999536711290056 19102 chr5 72187661 72187661 1 + C T BRCA 72187662 + 72187642 72187682 41 TATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACA TATTCAGATGCTAATGCCTTCACTGATCCAGAAATGGAACA < 41bp 1 0.18623096505163 1 0.158769845962524 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187662 chr5:72187661 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_17692 0 0 1 0 2 Cytosol 1 0.50023164392111 1 0.999536712157779 hm5C_site_19102 DeepMRMD:1;iRNA_m5C:0.999536712157779 19103 chr5 72187661 72187661 1 + C T BRCA 72187664 + 72187644 72187684 41 TTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACATG TTCAGATGCTAATGCCTTCACTGATCCAGAAATGGAACATG < 41bp 1 0.299199347766053 1 0.1149962246418 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187664 chr5:72187661 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_17693 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_19103 DeepMRMD:1;iRNA_m5C:0.999536712157815 19104 chr5 72187661 72187661 1 + C T BRCA 72187669 + 72187649 72187689 41 ATGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAA ATGCTAATGCCTTCACTGATCCAGAAATGGAACATGTTAAA < 41bp 1 0.484940792448874 1 0.797165870666504 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187669 chr5:72187661 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_17694 0 0 1 0 2 Cytosol 1 0.500231631666137 0.405668258666992 0.999536736667726 hm5C_site_19104 DeepMRMD:0.405668258666992;iRNA_m5C:0.999536736667726 19105 chr5 72187661 72187661 1 + C T BRCA 72187670 + 72187650 72187690 41 TGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAAG TGCTAATGCCTTCACTGATCCAGAAATGGAACATGTTAAAG < 41bp 1 0.552527214994347 1 0.344975888729095 experiment 0.894945570011305 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187670 chr5:72187661 nonsynonymous SNV 0.999 2 12 hm5C_associated_SNPs_17695 0 0 1 0 2 Cytosol 1 0.50023164392078 1 0.99953671215844 hm5C_site_19105 DeepMRMD:1;iRNA_m5C:0.99953671215844 19106 chr5 72187661 72187661 1 + C T BRCA 72187681 + 72187661 72187701 41 CCACTGATCCAGAAATGGAACATGTTAAAGGATGAAGATAA TCACTGATCCAGAAATGGAACATGTTAAAGGATGAAGATAA < 41bp 1 0.190759733972646 1 0.165381729602814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187681 chr5:72187661 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_17696 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19106 DeepMRMD:1;iRNA_m5C:0.999536712157815 19107 chr20 42680113 42680113 1 + G A BRCA 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATCACCACCGGGGAGCAAGTCAGCGACCCCCTCTCC < 41bp 1 0.375871653579165 1 0.144389510154724 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680113 synonymous SNV . 0 12 hm5C_associated_SNPs_17697 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19107 DeepMRMD:1;iRNA_m5C:0.999536712157815 19108 chr14 21963403 21963403 1 + C T BRCA 21963397 + 21963377 21963417 41 TCTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAA TCTTCTCACAGGTTGAGTCTCCTTCTTAGATGGATGTTGAA < 41bp 1 0.0291654046251917 1 0.0503973066806793 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963397 chr14:21963403 stopgain 1.000 0 27 hm5C_associated_SNPs_17698 0 0 1 0 1 Ribosome 1 0.500231643927626 1 0.999536712144748 hm5C_site_19108 DeepMRMD:1;iRNA_m5C:0.999536712144748 19109 chr14 21963403 21963403 1 + C T BRCA 21963398 + 21963378 21963418 41 CTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAAT CTTCTCACAGGTTGAGTCTCCTTCTTAGATGGATGTTGAAT < 41bp 1 0.124210416324829 1 0.0162611305713654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963398 chr14:21963403 stopgain 1.000 0 26 hm5C_associated_SNPs_17699 0 0 1 0 1 Ribosome 1 0.500231643921222 1 0.999536712157556 hm5C_site_19109 DeepMRMD:1;iRNA_m5C:0.999536712157556 19110 chr12 6976710 6976710 1 + C T BRCA 6976702 + 6976682 6976722 41 GCCGCGACTGCGCGCAGACACTGACCTTCAGCGCCTCGGCT GCCGCGACTGCGCGCAGACACTGACCTTTAGCGCCTCGGCT < 41bp 1 0.499995076636286 1 0.110215365886688 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6976702 chr12:6976710 stopgain 0.751 0 29 hm5C_associated_SNPs_17700 0 0 1 0 0 Ribosome 1 0.500231710698384 1 0.999536578603232 hm5C_site_19110 DeepMRMD:1;iRNA_m5C:0.999536578603232 19111 chr11 5624607 5624607 1 + T A BRCA 5624588 + 5624568 5624608 41 TACGAGAAGAGGTGACCTGCCCTATCTGCCTGGAGCTCCTA TACGAGAAGAGGTGACCTGCCCTATCTGCCTGGAGCTCCAA < 41bp 1 0.115876859246091 1 0.106397449970245 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5624588 chr11:5624607 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_17701 0 0 0 0 0 unknown 1 0.500231643921181 1 0.999536712157638 hm5C_site_19111 DeepMRMD:1;iRNA_m5C:0.999536712157638 19112 chr5 14498736 14498736 1 + C A BRCA 14498746 + 14498726 14498766 41 CGTCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG CGTCGGCCAGACTGAGGGTCCTAGGTAAGCACCGTGCAACG < 41bp 1 0.412255612835644 1 0.242122203111649 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14498746 chr5:14498736 nonsynonymous SNV 0.936 3 11 hm5C_associated_SNPs_17702 0 0 1 0 1 Nucleus 1 0.500231643918976 1 0.999536712162048 hm5C_site_19112 DeepMRMD:1;iRNA_m5C:0.999536712162048 19113 chr7 98528431 98528431 1 + T A BRCA 98528424 + 98528404 98528444 41 AGACATTCCTGAAAGCACTTCTCTTTGTCATGATGGACTTA AGACATTCCTGAAAGCACTTCTCTTTGACATGATGGACTTA < 41bp 1 0.0472045729483243 1 0.20312237739563 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528424 chr7:98528431 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_17703 0 0 1 0 1 Nucleus 1 0.500231941457138 1 0.999536117085724 hm5C_site_19113 DeepMRMD:1;iRNA_m5C:0.999536117085724 19114 chr7 98528431 98528431 1 + T A BRCA 98528441 + 98528421 98528461 41 CTTCTCTTTGTCATGATGGACTTAACTGGAGAGGTAGGTGA CTTCTCTTTGACATGATGGACTTAACTGGAGAGGTAGGTGA < 41bp 1 0.105074679925999 1 0.0781107544898987 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528441 chr7:98528431 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_17704 0 0 1 0 1 Nucleus 1 0.500231540636094 1 0.999536918727812 hm5C_site_19114 DeepMRMD:1;iRNA_m5C:0.999536918727812 19115 chr3 12531408 12531408 1 + T C BRCA 12531390 + 12531370 12531410 41 CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTC CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAACTC < 41bp 1 0.35506274392437 1 0.272526681423187 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12531390 chr3:12531408 nonsynonymous SNV 0.012 1 39 hm5C_associated_SNPs_17705 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_19115 DeepMRMD:1;iRNA_m5C:0.999536712157814 19116 chr9 33917121 33917121 1 + C G BRCA 33917126 + 33917106 33917146 41 GCCTTCCAATGACAACAGCTCAGATTTGCTTTACGACGACT GCCTTCCAATGACAAGAGCTCAGATTTGCTTTACGACGACT < 41bp 1 0.281223237586528 1 0.213797748088837 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917126 chr9:33917121 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_17707 0 0 1 0 0 Cytosol 1 0.500231643955803 1 0.999536712088395 hm5C_site_19116 DeepMRMD:1;iRNA_m5C:0.999536712088395 19117 chr7 157041140 157041140 1 + G A BRCA 157041160 + 157041140 157041180 41 GTGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA ATGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA < 41bp 1 0.326404341018224 1 0.452379286289215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157041160 chr7:157041140 nonsynonymous SNV 0.749 4 1 hm5C_associated_SNPs_17708 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19117 DeepMRMD:1;iRNA_m5C:0.999536712157815 19118 chr1 10231364 10231364 1 + G A BRCA 10231351 + 10231331 10231371 41 GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGC GATATTTACTTACAGCTGGACTGTGCTCGGTTCACGAAAGC < 41bp 1 0.202238087062774 1 0.171253085136414 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10231351 chr1:10231364 nonsynonymous SNV 0.963 4 34 hm5C_associated_SNPs_17709 0 0 1 0 1 Cytosol 1 0.500234640918717 1 0.999530718162566 hm5C_site_19118 DeepMRMD:1;iRNA_m5C:0.999530718162566 19119 chr1 229783409 229783409 1 + C G BRCA 229783428 + 229783408 229783448 41 TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTC TGCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTC < 41bp 1 0.272107591595119 1 0.319845080375671 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control URB2 ENSG00000135763 CDS Human protein_coding chr1:229783428 chr1:229783409 synonymous SNV . 0 2 hm5C_associated_SNPs_17710 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_19119 DeepMRMD:1;iRNA_m5C:0.999536712157816 19120 chr3 179478911 179478911 1 + G C BRCA 179478903 + 179478883 179478923 41 CCTGTTGTGCTCTGTAGCATCAGACATCGATGAGTCATCAG CCTGTTGTGCTCTGTAGCATCAGACATCCATGAGTCATCAG < 41bp 1 0.313181971732647 1 0.644624948501587 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179478903 chr3:179478911 nonsynonymous SNV 0.990 4 29 hm5C_associated_SNPs_17711 0 0 1 0 1 Ribosome 1 0.500231643942828 0.710750102996826 0.999536712114344 hm5C_site_19120 DeepMRMD:0.710750102996826;iRNA_m5C:0.999536712114344 19121 chr12 6961446 6961446 1 + G A BRCA 6961445 + 6961425 6961465 41 GACGAGTGCGCCTTCTCCTTCGACACGCCGGTAAGCCCATT GACGAGTGCGCCTTCTCCTTCAACACGCCGGTAAGCCCATT < 41bp 1 0.604140043960961 1 0.444234579801559 experiment 0.791719912078078 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6961445 chr12:6961446 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_17712 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19121 DeepMRMD:1;iRNA_m5C:0.999536712157815 19122 chrX 41025387 41025387 1 + C T BRCA 41025376 + 41025356 41025396 41 TTTTGAGCGATTCTTCAAAGCTGTGAATTGTCGAGAAGGAA TTTTGAGCGATTCTTCAAAGCTGTGAATTGTTGAGAAGGAA < 41bp 1 0.160109057006134 1 0.0666742324829102 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41025376 chrX:41025387 stopgain 1.000 1 32 hm5C_associated_SNPs_17713 0 0 1 0 0 Nucleus 1 0.500173629291632 1 0.999652741416736 hm5C_site_19122 DeepMRMD:1;iRNA_m5C:0.999652741416736 19123 chrX 41025364 41025364 1 + G A BRCA 41025376 + 41025356 41025396 41 TTTTGAGCGATTCTTCAAAGCTGTGAATTGTCGAGAAGGAA TTTTGAGCAATTCTTCAAAGCTGTGAATTGTCGAGAAGGAA < 41bp 1 0.112622916140438 1 0.0452180802822113 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41025376 chrX:41025364 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_17714 0 0 1 0 0 Nucleus 1 0.500231644065229 1 0.999536711869542 hm5C_site_19123 DeepMRMD:1;iRNA_m5C:0.999536711869542 19124 chrX 129063526 129063526 1 + A T BRCA 129063507 + 129063487 129063527 41 GGTCTTCCTCAAGGTCGGACCTGTCTGTCATACAGAGGAAT GGTCTTCCTCAAGGTCGGACCTGTCTGTCATACAGAGGATT < 41bp 1 0.121051469958491 1 0.0472950637340546 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP14A ENSG00000156697 CDS Human protein_coding chrX:129063507 chrX:129063526 nonsynonymous SNV 0.963 0 40 hm5C_associated_SNPs_17715 0 0 0 0 0 Cytosol 1 0.500231644337671 1 0.999536711324658 hm5C_site_19124 DeepMRMD:1;iRNA_m5C:0.999536711324658 19125 chr3 184577834 184577834 1 + A G BRCA 184577844 + 184577824 184577864 41 CACCTATACTATGACCTCATCAACTTTACCGTGAGTATTAT CACCTATACTGTGACCTCATCAACTTTACCGTGAGTATTAT < 41bp 1 0.118540302766031 1 0.342830181121826 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184577844 chr3:184577834 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_17716 0 0 1 0 2 chromatin 1 0.500231643921108 1 0.999536712157784 hm5C_site_19125 DeepMRMD:1;iRNA_m5C:0.999536712157784 19126 chr4 1941401 1941401 1 + G A BRCA 1941384 + 1941364 1941404 41 CCAAAATTATTTTACAGCAACGAAAAATCTGTCTGATGCAT CCAAAATTATTTTACAGCAACGAAAAATCTGTCTGATACAT < 41bp 1 0.249228622617241 1 0.309852719306946 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD2 ENSG00000109685 CDS Human protein_coding chr4:1941384 chr4:1941401 nonsynonymous SNV 0.992 4 38 hm5C_associated_SNPs_17717 0 0 1 0 1 Nucleus 1 0.500231643224257 1 0.999536713551486 hm5C_site_19126 DeepMRMD:1;iRNA_m5C:0.999536713551486 19127 chr17 7606072 7606072 1 + C A BRCA 7606087 + 7606067 7606107 41 GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGTTACCCACT GAGCTACTGTGCTGGGATCTCCGGCAGTCTGGTTACCCACT < 41bp 1 0.485516440378356 1 0.845692038536072 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606087 chr17:7606072 synonymous SNV . 0 6 hm5C_associated_SNPs_17718 0 0 1 0 2 Ribosome 1 0.500231644190311 0.308615922927856 0.999536711619379 hm5C_site_19127 DeepMRMD:0.308615922927856;iRNA_m5C:0.999536711619379 19128 chr17 5984198 5984198 1 + G A BRCA 5984212 + 5984192 5984232 41 CTGCACGACCCTCGAGTCAGCCCAGAGCTGCTGCTGGGTGT CTGCACAACCCTCGAGTCAGCCCAGAGCTGCTGCTGGGTGT < 41bp 1 0.362875782662374 1 0.0819858908653259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control WSCD1 ENSG00000179314 CDS Human protein_coding chr17:5984212 chr17:5984198 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_17719 0 0 0 0 0 exosome 1 0.500231643921061 1 0.999536712157878 hm5C_site_19128 DeepMRMD:1;iRNA_m5C:0.999536712157878 19129 chrX 73045755 73045755 1 + C A BRCA 73045745 - 73045725 73045765 41 GAGAACCTGGGACTGTTGAGCATGTTTAATACTTTCCTTGA GAGAACCTGGTACTGTTGAGCATGTTTAATACTTTCCTTGA < 41bp 1 0.127985201859397 1 0.546557247638702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045745 chrX:73045755 . . 0 11 hm5C_associated_SNPs_17720 0 0 1 3 0 unknown 1 0.500231643921048 0.906885504722596 0.999536712157904 hm5C_site_19129 DeepMRMD:0.906885504722596;iRNA_m5C:0.999536712157904 19130 chrX 73045755 73045755 1 + C A BRCA 73045753 - 73045733 73045773 41 AAAGATGAGAGAACCTGGGACTGTTGAGCATGTTTAATACT AAAGATGAGAGAACCTGGTACTGTTGAGCATGTTTAATACT < 41bp 1 0.0463246124984845 1 0.0784916579723358 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045753 chrX:73045755 . . 0 19 hm5C_associated_SNPs_17721 0 0 1 3 0 unknown 1 0.500231643921095 1 0.99953671215781 hm5C_site_19130 DeepMRMD:1;iRNA_m5C:0.99953671215781 19131 chrX 73045755 73045755 1 + C A BRCA 73045760 - 73045740 73045780 41 TAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGCATGTT TAGGCTTAAAGATGAGAGAACCTGGTACTGTTGAGCATGTT < 41bp 1 0.0454184265074613 1 0.115916579961777 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045760 chrX:73045755 . . 0 26 hm5C_associated_SNPs_17722 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19131 DeepMRMD:1;iRNA_m5C:0.999536712157815 19132 chr22 42018039 42018039 1 + G C BRCA 42018044 + 42018024 42018064 41 TCATATTACAAAACCGAGGGCGATGAAGAAGCAGAGGAAGA TCATATTACAAAACCCAGGGCGATGAAGAAGCAGAGGAAGA < 41bp 1 0.113535298778469 1 0.382210254669189 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42018044 chr22:42018039 nonsynonymous SNV 0.982 1 16 hm5C_associated_SNPs_17723 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_19132 DeepMRMD:1;iRNA_m5C:0.999536712157815 19133 chr14 75247126 75247126 1 + G C BRCA 75247109 + 75247089 75247129 41 TGTCCTCTTTTATCTTTAGTCTGAGGACCCAGAAGAAGATG TGTCCTCTTTTATCTTTAGTCTGAGGACCCAGAAGAACATG < 41bp 1 0.494642830983916 1 0.755407094955444 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75247109 chr14:75247126 nonsynonymous SNV 0.996 1 38 hm5C_associated_SNPs_17725 0 0 1 0 1 Cytosol 1 0.500180961537352 0.489185810089112 0.999638076925295 hm5C_site_19133 DeepMRMD:0.489185810089112;iRNA_m5C:0.999638076925295 19134 chr6 31868782 31868782 1 + C A BRCA 31868773 - 31868753 31868793 41 TTAGGGACATCGTCAACTACCTTACAGCCGCCTCCTACCTG TTAGGGACATCTTCAACTACCTTACAGCCGCCTCCTACCTG < 41bp 1 0.0645489889825139 1 0.0138328969478607 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB12 ENSG00000204366 CDS Human protein_coding chr6:31868773 chr6:31868782 nonsynonymous SNV 0.983 3 12 hm5C_associated_SNPs_17726 0 0 1 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_19134 DeepMRMD:1;iRNA_m5C:0.999536712157815 19135 chr6 31868782 31868782 1 + C A BRCA 31868777 - 31868757 31868797 41 GCTGTTAGGGACATCGTCAACTACCTTACAGCCGCCTCCTA GCTGTTAGGGACATCTTCAACTACCTTACAGCCGCCTCCTA < 41bp 1 0.367645519601278 1 0.115822970867157 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB12 ENSG00000204366 CDS Human protein_coding chr6:31868777 chr6:31868782 nonsynonymous SNV 0.983 3 16 hm5C_associated_SNPs_17727 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19135 DeepMRMD:1;iRNA_m5C:0.999536712157815 19136 chr1 22835081 22835081 1 + C G BRCA 22835072 + 22835052 22835092 41 TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAG TGGTTCAGGTGGTTTCAATTCTCTGATATGAGCAGTTCTAG < 41bp 1 0.416906677923151 1 0.621993958950043 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22835072 chr1:22835081 stopgain 0.994 0 30 hm5C_associated_SNPs_17728 0 0 1 0 1 Nucleus 1 0.500231643924254 0.756012082099914 0.999536712151492 hm5C_site_19136 DeepMRMD:0.756012082099914;iRNA_m5C:0.999536712151492 19137 chr1 203787708 203787708 1 + G A BRCA 203787706 + 203787686 203787726 41 ATTTGTTTACAGGGTGACAGCTGCCCATTCCGTCACTGTGA ATTTGTTTACAGGGTGACAGCTACCCATTCCGTCACTGTGA < 41bp 1 0.307143535259444 1 0.0972275137901306 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203787706 chr1:203787708 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_17729 0 0 1 0 0 Nucleus 1 0.500231636531003 1 0.999536726937993 hm5C_site_19137 DeepMRMD:1;iRNA_m5C:0.999536726937993 19138 chr1 203787708 203787708 1 + G A BRCA 203787710 + 203787690 203787730 41 GTTTACAGGGTGACAGCTGCCCATTCCGTCACTGTGAAGCT GTTTACAGGGTGACAGCTACCCATTCCGTCACTGTGAAGCT < 41bp 1 0.101096318275676 1 0.084302693605423 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203787710 chr1:203787708 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_17730 0 0 1 0 0 Nucleus 1 0.500231643964656 1 0.999536712070689 hm5C_site_19138 DeepMRMD:1;iRNA_m5C:0.999536712070689 19139 chr1 203787708 203787708 1 + G A BRCA 203787711 + 203787691 203787731 41 TTTACAGGGTGACAGCTGCCCATTCCGTCACTGTGAAGCTG TTTACAGGGTGACAGCTACCCATTCCGTCACTGTGAAGCTG < 41bp 1 0.0767528496962777 1 0.0535237193107605 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203787711 chr1:203787708 nonsynonymous SNV 0.998 4 18 hm5C_associated_SNPs_17731 0 0 1 0 0 Nucleus 1 0.500195161151816 1 0.999609677696369 hm5C_site_19139 DeepMRMD:1;iRNA_m5C:0.999609677696369 19140 chr11 110035764 110035764 1 + C T BRCA 110035769 + 110035749 110035789 41 TCCTATGTCAGCTCCCCCGACCCACAGCTAGAGGAGAATTT TCCTATGTCAGCTCCTCCGACCCACAGCTAGAGGAGAATTT < 41bp 1 0.0525913148705412 1 0.0239103436470032 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035769 chr11:110035764 nonsynonymous SNV 0.977 3 16 hm5C_associated_SNPs_17732 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_19140 DeepMRMD:1;iRNA_m5C:0.999536712157816 19141 chrX 117959237 117959237 1 + C G BRCA 117959256 + 117959236 117959276 41 ACAGCCGGCGGCTGAATGCACCCTTGCCGCCTTGGGCCCAT AGAGCCGGCGGCTGAATGCACCCTTGCCGCCTTGGGCCCAT < 41bp 1 0.346376713945864 1 0.0305153429508209 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZCCHC12 ENSG00000174460 CDS Human protein_coding chrX:117959256 chrX:117959237 nonsynonymous SNV 0.157 1 2 hm5C_associated_SNPs_17733 0 0 1 0 0 exosome 1 0.500231643919838 1 0.999536712160323 hm5C_site_19141 DeepMRMD:1;iRNA_m5C:0.999536712160323 19142 chr18 74625749 74625749 1 + C T BRCA 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGTAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC < 41bp 1 0.337567642600825 1 0.0767413973808289 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625749 stopgain 0.981 1 6 hm5C_associated_SNPs_17734 0 0 0 0 1 Cytosol 1 0.500231749110312 1 0.999536501779377 hm5C_site_19142 DeepMRMD:1;iRNA_m5C:0.999536501779377 19143 chr18 74631946 74631946 1 + C T BRCA 74631960 + 74631940 74631980 41 GCAGGACGAGCCCAAGCACGCCAACTGCTGCACATACTGCC GCAGGATGAGCCCAAGCACGCCAACTGCTGCACATACTGCC < 41bp 1 0.0925980680327459 1 0.319972723722458 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74631960 chr18:74631946 synonymous SNV . 0 7 hm5C_associated_SNPs_17736 0 0 1 0 1 Cytosol 1 0.500231642349977 1 0.999536715300046 hm5C_site_19143 DeepMRMD:1;iRNA_m5C:0.999536715300046 19144 chr19 7584348 7584348 1 + G A BRCA 7584367 + 7584347 7584387 41 CGACGCCGAAGCTCCGGGCTCGGAACCCCAAGATCCCGACC CAACGCCGAAGCTCCGGGCTCGGAACCCCAAGATCCCGACC < 41bp 1 0.663668563938403 1 0.596680045127869 experiment 0.672662872123193 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF358 ENSG00000198816 CDS Human protein_coding chr19:7584367 chr19:7584348 nonsynonymous SNV 0.003 0 2 hm5C_associated_SNPs_17737 0 0 1 0 0 Cytosol 1 0.500231643921092 0.806639909744262 0.999536712157815 hm5C_site_19144 DeepMRMD:0.806639909744262;iRNA_m5C:0.999536712157815 19145 chr9 109773238 109773238 1 + A G BRCA 109773231 + 109773211 109773251 41 CCATTGGGATAGACTTTTCCCTAAAGAATGAAACAGTAGCC CCATTGGGATAGACTTTTCCCTAAAGAGTGAAACAGTAGCC < 41bp 1 0.453378653480422 1 0.386569380760193 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109773231 chr9:109773238 nonsynonymous SNV 0.972 0 28 hm5C_associated_SNPs_17738 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19145 DeepMRMD:1;iRNA_m5C:0.999536712157815 19146 chr16 88501728 88501728 1 + G C BRCA 88501733 + 88501713 88501753 41 GCCGGAGGTGGCGCCGAGAGCCCACCGTGGACTCTCCTAGC GCCGGAGGTGGCGCCCAGAGCCCACCGTGGACTCTCCTAGC < 41bp 1 0.0436718698244015 1 0.286130309104919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88501733 chr16:88501728 nonsynonymous SNV 0.000 1 16 hm5C_associated_SNPs_17739 0 0 0 0 0 exosome 1 0.500231643921142 1 0.999536712157716 hm5C_site_19146 DeepMRMD:1;iRNA_m5C:0.999536712157716 19147 chr8 144732952 144732952 1 + T C BRCA 144732951 + 144732931 144732971 41 GGGAAGGCATTCCGTCATCGCTCAGACCTTATTGAACACCA GGGAAGGCATTCCGTCATCGCCCAGACCTTATTGAACACCA < 41bp 1 0.299458882130848 1 0.27214178442955 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF623 ENSG00000183309 CDS Human protein_coding chr8:144732951 chr8:144732952 nonsynonymous SNV 0.008 2 22 hm5C_associated_SNPs_17740 0 0 1 0 0 cytosol 1 0.500231664058772 1 0.999536671882456 hm5C_site_19147 DeepMRMD:1;iRNA_m5C:0.999536671882456 19148 chr1 151261988 151261988 1 + A G BRCA 151262002 + 151261982 151262022 41 TTGCCCAAAAAAGGACCATGCTGGAACATCTCAAGGTACAG TTGCCCGAAAAAGGACCATGCTGGAACATCTCAAGGTACAG < 41bp 1 0.664557652015613 1 0.379396080970764 experiment 0.670884695968773 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151262002 chr1:151261988 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_17741 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19148 DeepMRMD:1;iRNA_m5C:0.999536712157815 19149 chrX 47774342 47774342 1 + G C BRCA 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAACCCTTCCCAGAGGAGAATTTCTGGGAA < 41bp 1 0.247264451606426 1 0.681777596473694 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774342 nonsynonymous SNV 0.908 0 15 hm5C_associated_SNPs_17742 0 0 1 0 1 cytosol 1 0.500231643921092 0.636444807052612 0.999536712157815 hm5C_site_19149 DeepMRMD:0.636444807052612;iRNA_m5C:0.999536712157815 19150 chr3 50006066 50006066 1 + G T CESC 50006076 + 50006056 50006096 41 GATTACAGAAGCATGGAGTACCGTGATGTGGATCATAGGCT GATTACAGAATCATGGAGTACCGTGATGTGGATCATAGGCT < 41bp 1 0.149124613276973 1 0.0963891744613647 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50006076 chr3:50006066 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_17743 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19150 DeepMRMD:1;iRNA_m5C:0.999536712157815 19151 chr1 230379165 230379165 1 + G T CESC 230379152 + 230379132 230379172 41 AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGTTGGCGGA < 41bp 1 0.0827361813750168 1 0.112753301858902 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230379152 chr1:230379165 nonsynonymous SNV 0.909 3 34 hm5C_associated_SNPs_17744 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19151 DeepMRMD:1;iRNA_m5C:0.999536712157815 19152 chr1 223900477 223900477 1 + C T CESC 223900495 + 223900475 223900515 41 CTCTTCCAGGACCCGTCCTTCCCGGCCATCCCCTCGGCCCT CTTTTCCAGGACCCGTCCTTCCCGGCCATCCCCTCGGCCCT < 41bp 1 0.595728486549037 1 0.27934068441391 experiment 0.808543026901926 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223900495 chr1:223900477 synonymous SNV . 0 3 hm5C_associated_SNPs_17745 0 0 1 0 0 Ribosome 1 0.500231644213238 1 0.999536711573525 hm5C_site_19152 DeepMRMD:1;iRNA_m5C:0.999536711573525 19153 chr16 1556304 1556304 1 + C T CESC 1556292 + 1556272 1556312 41 AGCAGATTCAACTCCGTGGCCGGCCACTTCTTCTTCCCCCT AGCAGATTCAACTCCGTGGCCGGCCACTTCTTTTTCCCCCT < 41bp 1 0.32461454370765 1 0.350699543952942 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1556292 chr16:1556304 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_17746 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_19153 DeepMRMD:1;iRNA_m5C:0.999536712157816 19154 chr6 52943677 52943677 1 + G A CESC 52943668 + 52943648 52943688 41 AGATTACTTATACCCGGTCTCCAGATGGTGATGGCGTTGGA AGATTACTTATACCCGGTCTCCAGATGGTAATGGCGTTGGA < 41bp 1 0.618395572902304 1 0.650678038597107 experiment 0.763208854195393 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943668 chr6:52943677 nonsynonymous SNV 0.998 2 30 hm5C_associated_SNPs_17747 0 0 1 0 2 Cytosol 1 0.500231643867994 0.698643922805786 0.999536712264013 hm5C_site_19154 DeepMRMD:0.698643922805786;iRNA_m5C:0.999536712264013 19155 chr5 131930625 131930625 1 + G T CESC 131930610 + 131930590 131930630 41 AAAATCATATAAATAATGAACTAAAAAGAAAGGAAGAGCAG AAAATCATATAAATAATGAACTAAAAAGAAAGGAATAGCAG < 41bp 1 0.378402924683178 1 0.331418365240097 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131930610 chr5:131930625 stopgain 0.998 1 36 hm5C_associated_SNPs_17748 0 0 1 0 1 Cytosol 1 0.500231643906785 1 0.99953671218643 hm5C_site_19155 DeepMRMD:1;iRNA_m5C:0.99953671218643 19156 chr5 131930621 131930621 1 + G T CESC 131930610 + 131930590 131930630 41 AAAATCATATAAATAATGAACTAAAAAGAAAGGAAGAGCAG AAAATCATATAAATAATGAACTAAAAAGAAATGAAGAGCAG < 41bp 1 0.423520661176127 1 0.366712749004364 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131930610 chr5:131930621 nonsynonymous SNV 0.991 4 32 hm5C_associated_SNPs_17749 0 0 1 0 1 Cytosol 1 0.500231614214754 1 0.999536771570491 hm5C_site_19156 DeepMRMD:1;iRNA_m5C:0.999536771570491 19157 chr17 33953832 33953832 1 + G C CESC 33953838 + 33953818 33953858 41 CAGTATGTCGCCCTGAGGAACATCAACTTAATTGTCCAGAA CAGTATGTCGCCCTCAGGAACATCAACTTAATTGTCCAGAA < 41bp 1 0.375431246651671 1 0.0836286544799805 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:33953838 chr17:33953832 synonymous SNV . 0 15 hm5C_associated_SNPs_17751 0 0 1 0 1 Cytosol 1 0.500231655320729 1 0.999536689358543 hm5C_site_19157 DeepMRMD:1;iRNA_m5C:0.999536689358543 19158 chr12 105558478 105558478 1 + G A CESC 105558486 + 105558466 105558506 41 CAGAGCAGACAAGACTGCGGCTGAAGAAAACCAAGAAAAGA CAGAGCAGACAAAACTGCGGCTGAAGAAAACCAAGAAAAGA < 41bp 1 0.385823387248451 1 0.503418028354645 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105558486 chr12:105558478 synonymous SNV . 0 13 hm5C_associated_SNPs_17752 0 0 1 0 2 unknown 1 0.500242739233473 0.99316394329071 0.999514521533055 hm5C_site_19158 DeepMRMD:0.99316394329071;iRNA_m5C:0.999514521533055 19159 chr17 40714701 40714701 1 + C G CESC 40714704 + 40714684 40714724 41 TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCG TGGCCTCCCTAGCCCCTGGCCTGGCCTCCATCCTGACCTCG < 41bp 1 0.53842918573091 1 0.220811426639557 experiment 0.923141628538179 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40714704 chr17:40714701 nonsynonymous SNV 0.902 4 18 hm5C_associated_SNPs_17753 0 0 1 0 1 Ribosome 1 0.500231643923026 1 0.999536712153948 hm5C_site_19159 DeepMRMD:1;iRNA_m5C:0.999536712153948 19160 chr6 7581095 7581095 1 + C T CESC 7581082 + 7581062 7581102 41 CAGGAGAGGACTGTGAAGGACCAGGATATCACGCGGTTCCA CAGGAGAGGACTGTGAAGGACCAGGATATCACGTGGTTCCA < 41bp 1 0.331653775147379 1 0.288315951824188 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581082 chr6:7581095 nonsynonymous SNV 0.012 2 34 hm5C_associated_SNPs_17754 0 0 1 0 0 Nucleus 1 0.500231659573499 1 0.999536680853001 hm5C_site_19160 DeepMRMD:1;iRNA_m5C:0.999536680853001 19161 chr6 7581095 7581095 1 + C T CESC 7581100 + 7581080 7581120 41 GACCAGGATATCACGCGGTTCCAGAACTCTCTGAAAGAGCT GACCAGGATATCACGTGGTTCCAGAACTCTCTGAAAGAGCT < 41bp 1 0.235106709830923 1 0.295678824186325 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581100 chr6:7581095 nonsynonymous SNV 0.012 2 16 hm5C_associated_SNPs_17755 0 0 1 0 0 Nucleus 1 0.500231643956158 1 0.999536712087683 hm5C_site_19161 DeepMRMD:1;iRNA_m5C:0.999536712087683 19162 chr12 132589423 132589423 1 + G A CESC 132589422 + 132589402 132589442 41 GCCCCTGGGCTTCGAGAGGACGCCCGGCGTGCTGCTCCCCG GCCCCTGGGCTTCGAGAGGACACCCGGCGTGCTGCTCCCCG < 41bp 1 0.476044562091122 1 0.0790144205093384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589422 chr12:132589423 synonymous SNV . 0 22 hm5C_associated_SNPs_17759 0 0 1 0 0 chromatin 1 0.500231643921096 1 0.999536712157808 hm5C_site_19162 DeepMRMD:1;iRNA_m5C:0.999536712157808 19163 chr6 44199824 44199824 1 + C T CESC 44199838 + 44199818 44199858 41 CAGCATCGCAGGCAGCAGCACCTGGGGTGAGGATGCCACAG CAGCATTGCAGGCAGCAGCACCTGGGGTGAGGATGCCACAG < 41bp 1 0.312268309731337 1 0.539102137088776 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44199838 chr6:44199824 synonymous SNV . 0 7 hm5C_associated_SNPs_17760 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643922546 0.921795725822448 0.999536712154908 hm5C_site_19163 DeepMRMD:0.921795725822448;iRNA_m5C:0.999536712154908 19164 chr9 35560823 35560823 1 + C T CESC 35560834 + 35560814 35560854 41 CGAAAAGCCCAGCGGGAGGCCCGGCCCACAAATAGGTGAGA CGAAAAGCCTAGCGGGAGGCCCGGCCCACAAATAGGTGAGA < 41bp 1 0.0904340853711051 1 0.496177911758423 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RUSC2 ENSG00000198853 CDS Human protein_coding chr9:35560834 chr9:35560823 stopgain 0.976 0 10 hm5C_associated_SNPs_17762 0 0 1 0 1 Cytosol 1 0.500231746591774 1 0.999536506816453 hm5C_site_19164 DeepMRMD:1;iRNA_m5C:0.999536506816453 19165 chr19 50906837 50906837 1 + C T CESC 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCATCTCTTGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0789186862141494 1 0.193814843893051 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906837 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_17763 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19165 DeepMRMD:1;iRNA_m5C:0.999536712157815 19166 chr19 50906837 50906837 1 + C T CESC 50906851 + 50906831 50906871 41 ATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT ATCTCTTGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT < 41bp 1 0.649283968574148 1 0.893548727035522 experiment 0.701432062851704 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906851 chr19:50906837 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_17764 0 0 1 0 2 Nucleus 1 0.500231643877124 0.212902545928956 0.999536712245752 hm5C_site_19166 DeepMRMD:0.212902545928956;iRNA_m5C:0.999536712245752 19167 chr3 141161572 141161572 1 + G A CESC 141161580 + 141161560 141161600 41 AGGAAAAAAGCTGGGAATATCGTTCTTGGAAGACCTTACTG AGGAAAAAAGCTAGGAATATCGTTCTTGGAAGACCTTACTG < 41bp 1 0.186169206501119 1 0.097015768289566 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZBTB38 ENSG00000177311 CDS Human protein_coding chr3:141161580 chr3:141161572 synonymous SNV . 0 13 hm5C_associated_SNPs_17765 0 0 1 0 0 chromatin 1 0.50023168135537 1 0.999536637289259 hm5C_site_19167 DeepMRMD:1;iRNA_m5C:0.999536637289259 19168 chr19 7987395 7987395 1 + G A CESC 7987382 + 7987362 7987402 41 CTTCCAGAGGAGCTGCCACTCCTGCCCTGCACAGCCCTGGT CTTCCAGAGGAGCTGCCACTCCTGCCCTGCACAACCCTGGT < 41bp 1 0.16596988962714 1 0.499493509531021 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7987382 chr19:7987395 nonsynonymous SNV 0.004 0 34 hm5C_associated_SNPs_17767 0 0 1 0 0 Ribosome 1 0.500227853947748 1 0.999544292104503 hm5C_site_19168 DeepMRMD:1;iRNA_m5C:0.999544292104503 19169 chr12 122079083 122079083 1 + A G CESC 122079102 + 122079082 122079122 41 AACATCGAGGCGGTGAGCAACGTGCACAATCTCAACTCGGT AGCATCGAGGCGGTGAGCAACGTGCACAATCTCAACTCGGT < 41bp 1 0.171359329916918 1 0.188400089740753 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ORAI1 ENSG00000182500 CDS Human other chr12:122079102 chr12:122079083 nonsynonymous SNV 0.999 3 2 hm5C_associated_SNPs_17768 0 0 0 0 0 Endoplasmic reticulum 1 0.500231660048948 1 0.999536679902104 hm5C_site_19169 DeepMRMD:1;iRNA_m5C:0.999536679902104 19170 chr11 994200 994200 1 + C T CESC 994214 + 994194 994234 41 TGTGGACGTGAACGGGGGTCCTGAGCCTGCCCCAGCCAGTA TGTGGATGTGAACGGGGGTCCTGAGCCTGCCCCAGCCAGTA < 41bp 1 0.461003914276729 1 0.145416498184204 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:994214 chr11:994200 synonymous SNV . 0 7 hm5C_associated_SNPs_17769 0 0 1 0 1 Nucleus 1 0.50023164639875 1 0.999536707202501 hm5C_site_19170 DeepMRMD:1;iRNA_m5C:0.999536707202501 19171 chr19 45648494 45648494 1 + C T CESC 45648504 + 45648484 45648524 41 GCCTGGACCTCGACCGTGAACCCAAGAAAGAGGCGGTGAGC GCCTGGACCTTGACCGTGAACCCAAGAAAGAGGCGGTGAGC < 41bp 1 0.482403399113258 1 0.0843452513217926 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R37 ENSG00000104866 CDS Human protein_coding chr19:45648504 chr19:45648494 synonymous SNV . 0 11 hm5C_associated_SNPs_17770 0 0 1 0 1 Ribosome 1 0.500231643921172 1 0.999536712157655 hm5C_site_19171 DeepMRMD:1;iRNA_m5C:0.999536712157655 19172 chr7 22896271 22896271 1 + C T CESC 22896268 + 22896248 22896288 41 CTCTAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAA CTCTAATCTGATTTTATGTGCTTTTGCTGTGATGGATTAAA < 41bp 1 0.0463930089078972 1 0.043730765581131 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896268 chr7:22896271 . . 0 24 hm5C_associated_SNPs_17771 0 0 1 1 0 unknown 1 0.500231642649712 1 0.999536714700575 hm5C_site_19172 DeepMRMD:1;iRNA_m5C:0.999536714700575 19173 chrX 73043746 73043746 1 + G A CESC 73043732 - 73043712 73043752 41 GGGGCTCGGAACTACATGCCCTAGGATATAAAAATGATGTT GGGGCTTGGAACTACATGCCCTAGGATATAAAAATGATGTT < 41bp 1 0.306833866195599 1 0.512212812900543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043732 chrX:73043746 . . 0 7 hm5C_associated_SNPs_17772 0 0 1 2 0 unknown 1 0.500231643921092 0.975574374198914 0.999536712157815 hm5C_site_19173 DeepMRMD:0.975574374198914;iRNA_m5C:0.999536712157815 19174 chrX 73043746 73043746 1 + G A CESC 73043738 - 73043718 73043758 41 TTCTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAAT TTCTGTGGGGCTTGGAACTACATGCCCTAGGATATAAAAAT < 41bp 1 0.0512866145080465 1 0.177982836961746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043738 chrX:73043746 . . 0 13 hm5C_associated_SNPs_17773 0 0 1 2 0 unknown 1 0.500231643936519 1 0.999536712126961 hm5C_site_19174 DeepMRMD:1;iRNA_m5C:0.999536712126961 19175 chrX 73043746 73043746 1 + G A CESC 73043748 - 73043728 73043768 41 GGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGG GGTGATTACTTTCTGTGGGGCTTGGAACTACATGCCCTAGG < 41bp 1 0.120193952952019 1 0.138409346342087 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043748 chrX:73043746 . . 0 23 hm5C_associated_SNPs_17774 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19175 DeepMRMD:1;iRNA_m5C:0.999536712157815 19176 chr11 57427146 57427146 1 + C T CESC 57427163 + 57427143 57427183 41 TTTCACTTGGCATGGCTGTTCTGTGCAACTGAGCGGCCGCA TTTTACTTGGCATGGCTGTTCTGTGCAACTGAGCGGCCGCA < 41bp 1 0.591811663716977 1 0.213114351034164 experiment 0.816376672566045 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLP1 ENSG00000172409 CDS Human protein_coding chr11:57427163 chr11:57427146 synonymous SNV . 0 4 hm5C_associated_SNPs_17775 0 0 1 0 0 Cytosol 1 0.500210741181972 1 0.999578517636056 hm5C_site_19176 DeepMRMD:1;iRNA_m5C:0.999578517636056 19177 chr11 4142936 4142936 1 + G T CESC 4142924 + 4142904 4142944 41 AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTC AGAACACAGGAAAGGAAGAGCAGCGTGCCAGATATCTTTTC < 41bp 1 0.616148641120294 1 0.492204993963242 experiment 0.767702717759413 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142924 chr11:4142936 nonsynonymous SNV 0.988 4 33 hm5C_associated_SNPs_17777 0 0 1 0 1 Nucleus 1 0.500231643921039 1 0.999536712157921 hm5C_site_19177 DeepMRMD:1;iRNA_m5C:0.999536712157921 19178 chr20 44506550 44506550 1 + G A CESC 44506564 + 44506544 44506584 41 GCCACTGAAGTCCAAGAAGGCTTTTGGAATCTGTGGAGAGA GCCACTAAAGTCCAAGAAGGCTTTTGGAATCTGTGGAGAGA < 41bp 1 0.0906472467922356 1 0.160421997308731 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZSWIM3 ENSG00000132801 CDS Human protein_coding chr20:44506564 chr20:44506550 synonymous SNV . 0 7 hm5C_associated_SNPs_17778 0 0 0 0 0 Cytosol 1 0.500231648001315 1 0.99953670399737 hm5C_site_19178 DeepMRMD:1;iRNA_m5C:0.99953670399737 19179 chr19 1053488 1053488 1 + G A CESC 1053481 + 1053461 1053501 41 AGAGCTAGACACGCGGCTGGCGGAGCTGAGGCTCACTGGCT AGAGCTAGACACGCGGCTGGCGGAGCTAAGGCTCACTGGCT < 41bp 1 0.470228817099923 1 0.895077466964722 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1053481 chr19:1053488 synonymous SNV . 0 28 hm5C_associated_SNPs_17779 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644046259 0.209845066070556 0.999536711907483 hm5C_site_19179 DeepMRMD:0.209845066070556;iRNA_m5C:0.999536711907483 19180 chr5 65892659 65892659 1 + G C CESC 65892648 + 65892628 65892668 41 TCGGAGGAAGGGGAGCCCGGCGGCTTCTCCAGAGAGCATCA TCGGAGGAAGGGGAGCCCGGCGGCTTCTCCACAGAGCATCA < 41bp 1 0.311829394958809 1 0.384095072746277 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST4 ENSG00000069020 CDS Human protein_coding chr5:65892648 chr5:65892659 nonsynonymous SNV 0.039 0 32 hm5C_associated_SNPs_17780 0 0 0 0 0 Cytosol 1 0.500231643931451 1 0.999536712137098 hm5C_site_19180 DeepMRMD:1;iRNA_m5C:0.999536712137098 19181 chr10 122664255 122664255 1 + C T CESC 122664258 + 122664238 122664278 41 AGTCACTACTGTCACCTCGTCAGGCCCCTCTCAGAGCACCA AGTCACTACTGTCACCTTGTCAGGCCCCTCTCAGAGCACCA < 41bp 1 0.430956913988995 1 0.799070715904236 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664258 chr10:122664255 nonsynonymous SNV 0.986 5 18 hm5C_associated_SNPs_17781 0 0 1 0 2 Nucleus 1 0.500231643683995 0.401858568191528 0.99953671263201 hm5C_site_19181 DeepMRMD:0.401858568191528;iRNA_m5C:0.99953671263201 19182 chr5 132203226 132203226 1 + C T CESC 132203207 + 132203187 132203227 41 AGTGTTTTATCTTATCTACACATGGGGGACTGAAGAGTTCG AGTGTTTTATCTTATCTACACATGGGGGACTGAAGAGTTTG < 41bp 1 0.486978294555978 1 0.219141155481339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132203207 chr5:132203226 synonymous SNV . 0 40 hm5C_associated_SNPs_17782 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19182 DeepMRMD:1;iRNA_m5C:0.999536712157815 19183 chr5 132203226 132203226 1 + C T CESC 132203216 + 132203196 132203236 41 TCTTATCTACACATGGGGGACTGAAGAGTTCGAGAGATCCA TCTTATCTACACATGGGGGACTGAAGAGTTTGAGAGATCCA < 41bp 1 0.570450892469612 1 0.268151074647903 experiment 0.859098215060776 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132203216 chr5:132203226 synonymous SNV . 0 31 hm5C_associated_SNPs_17783 0 0 1 0 0 Cytosol 1 0.500231644651352 1 0.999536710697295 hm5C_site_19183 DeepMRMD:1;iRNA_m5C:0.999536710697295 19184 chr15 63866331 63866331 1 + G A CESC 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAGAATCTAAAAAGTTTGATCCATTCCTAGGTAAGATATAT < 41bp 1 0.0137638385852621 1 0.0702128410339355 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866331 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_17784 0 0 1 4 2 Cytosol 1 0.500231651235529 1 0.999536697528941 hm5C_site_19184 DeepMRMD:1;iRNA_m5C:0.999536697528941 19185 chr9 72659589 72659589 1 + C T CESC 72659575 + 72659555 72659595 41 GAGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTCTGCCGT GAGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTTTGCCGT < 41bp 1 0.59190137325615 1 0.258632600307465 experiment 0.8161972534877 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659575 chr9:72659589 synonymous SNV . 0 35 hm5C_associated_SNPs_17785 0 0 0 1 2 nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_19185 DeepMRMD:1;iRNA_m5C:0.999536712157815 19186 chr9 72659589 72659589 1 + C T CESC 72659576 + 72659556 72659596 41 AGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTCTGCCGTG AGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTTTGCCGTG < 41bp 1 0.473975280080178 1 0.499132186174393 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659576 chr9:72659589 synonymous SNV . 0 34 hm5C_associated_SNPs_17786 0 0 0 1 2 nucleus 1 0.50023307122915 1 0.999533857541701 hm5C_site_19186 DeepMRMD:1;iRNA_m5C:0.999533857541701 19187 chr9 72659589 72659589 1 + C T CESC 72659584 + 72659564 72659604 41 CGGCTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAA CGGCTTTGACTCCGTGTTGGCCTCTTTGCCGTGGATTTTAA < 41bp 1 0.110592063027651 1 0.0463207364082336 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659584 chr9:72659589 synonymous SNV . 0 26 hm5C_associated_SNPs_17787 0 0 0 1 2 nucleus 1 0.500231641698523 1 0.999536716602954 hm5C_site_19187 DeepMRMD:1;iRNA_m5C:0.999536716602954 19188 chr9 72659589 72659589 1 + C T CESC 72659585 + 72659565 72659605 41 GGCTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAA GGCTTTGACTCCGTGTTGGCCTCTTTGCCGTGGATTTTAAA < 41bp 1 0.198593183158869 1 0.0890517830848694 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659585 chr9:72659589 synonymous SNV . 0 25 hm5C_associated_SNPs_17788 0 0 0 1 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19188 DeepMRMD:1;iRNA_m5C:0.999536712157815 19189 chr9 72659589 72659589 1 + C T CESC 72659587 + 72659567 72659607 41 CTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAATG CTTTGACTCCGTGTTGGCCTCTTTGCCGTGGATTTTAAATG < 41bp 1 0.189662388555003 1 0.209403842687607 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659587 chr9:72659589 synonymous SNV . 0 23 hm5C_associated_SNPs_17789 0 0 0 1 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19189 DeepMRMD:1;iRNA_m5C:0.999536712157815 19190 chr5 132203229 132203229 1 + G A CESC 132203216 + 132203196 132203236 41 TCTTATCTACACATGGGGGACTGAAGAGTTCGAGAGATCCA TCTTATCTACACATGGGGGACTGAAGAGTTCGAAAGATCCA < 41bp 1 0.609843051819233 1 0.256921231746674 experiment 0.780313896361534 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132203216 chr5:132203229 synonymous SNV . 0 34 hm5C_associated_SNPs_17790 0 0 1 0 0 Cytosol 1 0.500231654279036 1 0.999536691441927 hm5C_site_19190 DeepMRMD:1;iRNA_m5C:0.999536691441927 19191 chr3 119205772 119205772 1 + C T CESC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAAATTTATGAAAGTAAT < 41bp 1 0.616016686871919 1 0.155491352081299 experiment 0.767966626256162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205772 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_17791 0 0 1 4 2 Ribosome 1 0.500231644075719 1 0.999536711848561 hm5C_site_19191 DeepMRMD:1;iRNA_m5C:0.999536711848561 19192 chr20 42680134 42680134 1 + C G CESC 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATCACCGCCGGGGAGCAAGTCAGCGACGCCCTCTCC < 41bp 1 0.435604586006256 1 0.172458380460739 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680134 synonymous SNV . 0 33 hm5C_associated_SNPs_17792 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_19192 DeepMRMD:1;iRNA_m5C:0.999536712157814 19193 chr9 117063996 117063996 1 + C T CESC 117063993 + 117063973 117064013 41 CCCCAGAGGGCGGCCCGGCCCCCCGGTAGGTAACTGAGTGC CCCCAGAGGGCGGCCCGGCCCCCTGGTAGGTAACTGAGTGC < 41bp 1 0.232605782449874 1 0.165649235248566 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117063993 chr9:117063996 nonsynonymous SNV 0.819 4 24 hm5C_associated_SNPs_17793 0 0 1 0 1 Nucleus 1 0.50023164392107 1 0.99953671215786 hm5C_site_19193 DeepMRMD:1;iRNA_m5C:0.99953671215786 19194 chr5 40853321 40853321 1 + C G CESC 40853307 + 40853287 40853327 41 GAAGGAAGAACATGGAGGGCCTTCAAGCTGCCCTCCAGGAA GAAGGAAGAACATGGAGGGCCTTCAAGCTGCCCTGCAGGAA < 41bp 1 0.542240326838909 1 0.198140829801559 experiment 0.915519346322182 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CARD6 ENSG00000132357 CDS Human protein_coding chr5:40853307 chr5:40853321 synonymous SNV . 0 35 hm5C_associated_SNPs_17795 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_19194 DeepMRMD:1;iRNA_m5C:0.999536712157815 19195 chr14 77580482 77580482 1 + C T CESC 77580491 + 77580471 77580511 41 AGGAGTTGATTCGTCAGAATCAGGCAACTCAGGTAGAACTA AGGAGTTGATTTGTCAGAATCAGGCAACTCAGGTAGAACTA < 41bp 1 0.669900090416573 1 0.872260510921478 experiment 0.660199819166854 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CIPC ENSG00000198894 CDS Human protein_coding chr14:77580491 chr14:77580482 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_17796 0 0 1 0 0 nucleolus 1 0.500231631788057 0.255478978157044 0.999536736423886 hm5C_site_19195 DeepMRMD:0.255478978157044;iRNA_m5C:0.999536736423886 19196 chr5 65118654 65118654 1 + C T CESC 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGGGGATCTTTGGACGGCATGGACATGC < 41bp 1 0.167533898536821 1 0.0930141806602478 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118654 synonymous SNV . 0 23 hm5C_associated_SNPs_17797 0 0 1 0 1 Ribosome 1 0.500231643958052 1 0.999536712083895 hm5C_site_19196 DeepMRMD:1;iRNA_m5C:0.999536712083895 19197 chr3 124160810 124160810 1 + C T CESC 124160800 + 124160780 124160820 41 TGTCTTTCGCAGGCCTGCACCCTGGCTCGGCGGAATGCTGA TGTCTTTCGCAGGCCTGCACCCTGGCTCGGTGGAATGCTGA < 41bp 1 0.0984347431661136 1 0.377857446670532 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KALRN ENSG00000160145 CDS Human protein_coding chr3:124160800 chr3:124160810 nonsynonymous SNV 0.922 4 31 hm5C_associated_SNPs_17798 0 0 0 0 2 nucleoplasm 1 0.500231643989381 1 0.999536712021238 hm5C_site_19197 DeepMRMD:1;iRNA_m5C:0.999536712021238 19198 chr2 192141714 192141714 1 + C T CESC 192141711 + 192141691 192141731 41 GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAGAA GAACCTCTCAATGAGGAGACCTTTATCAACAACCTCAAGAA < 41bp 1 0.195933100478737 1 0.0713870823383331 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141711 chr2:192141714 synonymous SNV . 0 24 hm5C_associated_SNPs_17799 0 0 1 0 1 Nucleus 1 0.500231644049382 1 0.999536711901236 hm5C_site_19198 DeepMRMD:1;iRNA_m5C:0.999536711901236 19199 chr7 36445877 36445877 1 + C T CESC 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCAGACCTCTGCTTTCAAATGCCTTGGCAACTCCAG < 41bp 1 0.522400196818853 1 0.626441895961761 experiment 0.955199606362294 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445877 nonsynonymous SNV 0.122 1 30 hm5C_associated_SNPs_17800 0 0 1 0 1 Nucleus 1 0.500231643913189 0.747116208076478 0.999536712173623 hm5C_site_19199 DeepMRMD:0.747116208076478;iRNA_m5C:0.999536712173623 19200 chr5 132203227 132203227 1 + G C CESC 132203207 + 132203187 132203227 41 AGTGTTTTATCTTATCTACACATGGGGGACTGAAGAGTTCG AGTGTTTTATCTTATCTACACATGGGGGACTGAAGAGTTCC < 41bp 1 0.467669594854941 1 0.415349185466766 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132203207 chr5:132203227 nonsynonymous SNV 0.775 0 41 hm5C_associated_SNPs_17801 0 0 1 0 0 Cytosol 1 0.500231643921096 1 0.999536712157809 hm5C_site_19200 DeepMRMD:1;iRNA_m5C:0.999536712157809 19201 chr5 132203227 132203227 1 + G C CESC 132203216 + 132203196 132203236 41 TCTTATCTACACATGGGGGACTGAAGAGTTCGAGAGATCCA TCTTATCTACACATGGGGGACTGAAGAGTTCCAGAGATCCA < 41bp 1 0.601791936587748 1 0.301874965429306 experiment 0.796416126824503 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132203216 chr5:132203227 nonsynonymous SNV 0.775 0 32 hm5C_associated_SNPs_17802 0 0 1 0 0 Cytosol 1 0.500231660695247 1 0.999536678609507 hm5C_site_19201 DeepMRMD:1;iRNA_m5C:0.999536678609507 19202 chr1 10328298 10328298 1 + G A CESC 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATAATAAGACCAACCTTTCCACTGAGAAGGTAGG < 41bp 1 0.00212102289131071 1 0.0355300307273865 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328298 nonsynonymous SNV 0.924 2 13 hm5C_associated_SNPs_17804 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19202 DeepMRMD:1;iRNA_m5C:0.999536712157815 19203 chr17 7814210 7814210 1 + G A CESC 7814192 + 7814172 7814212 41 CGCCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGGCC CGCCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGACC < 41bp 1 0.096604941989213 1 0.0246374011039734 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814192 chr17:7814210 nonsynonymous SNV 0.979 2 39 hm5C_associated_SNPs_17805 0 0 1 0 2 Cytosol 1 0.500231644693862 1 0.999536710612275 hm5C_site_19203 DeepMRMD:1;iRNA_m5C:0.999536710612275 19204 chr12 57483098 57483098 1 + G A CESC 57483091 + 57483071 57483111 41 CCCCCACAGCCGAGCAGCCGCCGGGCGGAGGGGACAGCGCC CCCCCACAGCCGAGCAGCCGCCGGGCGAAGGGGACAGCGCC < 41bp 1 0.634847386547938 1 0.85571962594986 experiment 0.730305226904125 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NAB2 ENSG00000166886 CDS Human protein_coding chr12:57483091 chr12:57483098 nonsynonymous SNV 0.999 2 28 hm5C_associated_SNPs_17807 0 0 0 0 1 Cytosol 1 0.500231643921093 0.28856074810028 0.999536712157814 hm5C_site_19204 DeepMRMD:0.28856074810028;iRNA_m5C:0.999536712157814 19205 chr20 30526994 30526994 1 + G A CESC 30526975 + 30526955 30526995 41 AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATAA < 41bp 1 0.22905612756501 1 0.0856161415576935 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30526975 chr20:30526994 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_17808 0 0 0 0 1 exosome 1 0.500231643923038 1 0.999536712153924 hm5C_site_19205 DeepMRMD:1;iRNA_m5C:0.999536712153924 19206 chr19 42364896 42364896 1 + C G CESC 42364907 + 42364887 42364927 41 GTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTGAGTTTGGGG GTCAGAGCTGTGGCAGCCTTCCTCAAAAAGTGAGTTTGGGG < 41bp 1 0.230331632812829 1 0.55123108625412 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42364907 chr19:42364896 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_17809 0 0 1 0 2 Cytosol 1 0.500231643887469 0.89753782749176 0.999536712225062 hm5C_site_19206 DeepMRMD:0.89753782749176;iRNA_m5C:0.999536712225062 19207 chr3 155628636 155628636 1 + C T CESC 155628644 + 155628624 155628664 41 CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGTC CTTGAGTGTATTTGAGAGATCAAAGAGAGAGTAGGCACGTC < 41bp 1 0.527225276021903 1 0.352770686149597 experiment 0.945549447956195 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628644 chr3:155628636 stopgain 0.995 0 13 hm5C_associated_SNPs_17810 0 0 1 0 1 Nucleus 1 0.500231644155914 1 0.999536711688172 hm5C_site_19207 DeepMRMD:1;iRNA_m5C:0.999536711688172 19208 chrX 64956743 64956743 1 + A G CESC 64956736 + 64956716 64956756 41 TTGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG TTGAACGGGAGAAGGAGGAGCTGATGGGGAGGCTGAAGCAG < 41bp 1 0.406361188132271 1 0.319242388010025 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956736 chrX:64956743 nonsynonymous SNV 0.995 2 28 hm5C_associated_SNPs_17811 0 0 1 0 2 Ribosome 1 0.500231643921042 1 0.999536712157915 hm5C_site_19208 DeepMRMD:1;iRNA_m5C:0.999536712157915 19209 chr1 145304593 145304593 1 + C G CESC 145304596 + 145304576 145304616 41 GGAAGACAAAGTCGACTCAACTCTCATTGGCTCATCCTCTC GGAAGACAAAGTCGACTGAACTCTCATTGGCTCATCCTCTC < 41bp 1 0.0828188479583215 1 0.0408442914485931 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBPF10 ENSG00000163386 CDS Human other chr1:145304596 chr1:145304593 stopgain 0.001 0 18 hm5C_associated_SNPs_17812 0 0 0 0 0 chromatin 1 0.500231643968622 1 0.999536712062757 hm5C_site_19209 DeepMRMD:1;iRNA_m5C:0.999536712062757 19210 chr1 161132177 161132177 1 + G T CESC 161132159 + 161132139 161132179 41 AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGCTCACTGAA AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGCTCACTTAA < 41bp 1 0.463593064240004 1 0.742682039737701 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161132159 chr1:161132177 stopgain 0.987 0 39 hm5C_associated_SNPs_17813 0 0 1 0 1 Cytosol 1 0.500231643921092 0.514635920524598 0.999536712157815 hm5C_site_19210 DeepMRMD:0.514635920524598;iRNA_m5C:0.999536712157815 19211 chr9 135073615 135073615 1 + G A CESC 135073628 + 135073608 135073648 41 AACGGGCGCACCTGGCAGCCCTACCAGTTCTACGCCGAGGA AACGGGCACACCTGGCAGCCCTACCAGTTCTACGCCGAGGA < 41bp 1 0.154939446390808 1 0.0694639980792999 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135073628 chr9:135073615 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_17814 0 0 0 0 0 exosome 1 0.500231643927941 1 0.999536712144119 hm5C_site_19211 DeepMRMD:1;iRNA_m5C:0.999536712144119 19212 chr21 45546808 45546808 1 + C T CESC 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACTTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC < 41bp 1 0.387454958317884 1 0.239395052194595 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546808 nonsynonymous SNV 0.994 2 5 hm5C_associated_SNPs_17815 0 0 1 0 2 Nucleus 1 0.500231643525619 1 0.999536712948761 hm5C_site_19212 DeepMRMD:1;iRNA_m5C:0.999536712948761 19213 chr9 131846984 131846984 1 + C T CESC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTTAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT < 41bp 1 0.527116705208785 1 0.604248285293579 experiment 0.945766589582429 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131846984 synonymous SNV . 0 6 hm5C_associated_SNPs_17816 0 0 1 0 2 Ribosome 1 0.500231643921092 0.791503429412842 0.999536712157815 hm5C_site_19213 DeepMRMD:0.791503429412842;iRNA_m5C:0.999536712157815 19214 chr1 32502584 32502584 1 + G A CESC 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTCATGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT < 41bp 1 0.59821474713066 1 0.356010168790817 experiment 0.803570505738681 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502584 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_17818 0 0 1 0 2 Nucleus 1 0.500231647302829 1 0.999536705394342 hm5C_site_19214 DeepMRMD:1;iRNA_m5C:0.999536705394342 19215 chr3 49692543 49692543 1 + C G CESC 49692560 + 49692540 49692580 41 TCACATGCTCTGCCAGGTGCCAGGAAGCCACACACAGTGGT TCAGATGCTCTGCCAGGTGCCAGGAAGCCACACACAGTGGT < 41bp 1 0.437741045350079 1 0.844298899173737 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BSN ENSG00000164061 CDS Human protein_coding chr3:49692560 chr3:49692543 nonsynonymous SNV 0.992 0 4 hm5C_associated_SNPs_17820 0 0 0 0 0 chromatin 1 0.500231642304457 0.311402201652526 0.999536715391086 hm5C_site_19215 DeepMRMD:0.311402201652526;iRNA_m5C:0.999536715391086 19216 chr3 127340586 127340586 1 + G A CESC 127340602 + 127340582 127340622 41 ACCTGAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT ACCTAAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT < 41bp 1 0.5985422868964 1 0.870662450790405 experiment 0.8029154262072 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127340602 chr3:127340586 synonymous SNV . 0 5 hm5C_associated_SNPs_17823 0 0 1 0 1 Cytosol 1 0.500231643921095 0.25867509841919 0.99953671215781 hm5C_site_19216 DeepMRMD:0.25867509841919;iRNA_m5C:0.99953671215781 19217 chr2 109347309 109347309 1 + G A CESC 109347326 + 109347306 109347346 41 GAAGAAAACACAGACAAAGCCGTTGAATGTTACAGGGTAAG GAAAAAAACACAGACAAAGCCGTTGAATGTTACAGGGTAAG < 41bp 1 0.0671810335519482 1 0.171215236186981 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347326 chr2:109347309 nonsynonymous SNV 0.870 0 4 hm5C_associated_SNPs_17824 0 0 1 0 1 Nucleus 1 0.500231561139667 1 0.999536877720665 hm5C_site_19217 DeepMRMD:1;iRNA_m5C:0.999536877720665 19218 chr16 27761023 27761023 1 + C G CESC 27761012 + 27760992 27761032 41 GTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG GTGCCTTCGACCGCTCCCACCGGGGACGCATGTCCAACACG < 41bp 1 0.553833252445851 1 0.926088213920593 experiment 0.892333495108298 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27761012 chr16:27761023 nonsynonymous SNV 0.741 4 32 hm5C_associated_SNPs_17825 0 0 0 0 0 Nucleus 1 0.500231647002193 0.147823572158814 0.999536705995614 hm5C_site_19218 DeepMRMD:0.147823572158814;iRNA_m5C:0.999536705995614 19219 chr12 98995275 98995275 1 + C G CESC 98995269 + 98995249 98995289 41 CCCTCCTCCACCCGAGATGCCAGAGTCTCTGAAGAAGAAGC CCCTCCTCCACCCGAGATGCCAGAGTGTCTGAAGAAGAAGC < 41bp 1 0.590305585282381 1 0.34224009513855 experiment 0.819388829435238 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98995269 chr12:98995275 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_17826 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19219 DeepMRMD:1;iRNA_m5C:0.999536712157815 19220 chr6 26022038 26022038 1 + G T CESC 26022047 + 26022027 26022067 41 CGTGGCGGTGTGAAGCGGATCTCTGGTCTGATCTACGAGGA CGTGGCGGTGTTAAGCGGATCTCTGGTCTGATCTACGAGGA < 41bp 1 0.657341171480775 1 0.355623304843903 experiment 0.68531765703845 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H4A ENSG00000196176 CDS Human other chr6:26022047 chr6:26022038 synonymous SNV . 0 12 hm5C_associated_SNPs_17830 0 0 1 0 0 exosome 1 0.500231643817098 1 0.999536712365805 hm5C_site_19220 DeepMRMD:1;iRNA_m5C:0.999536712365805 19221 chr17 38450670 38450670 1 + G T CESC 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTATAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT < 41bp 1 0.547075359482236 1 0.327781856060028 experiment 0.905849281035528 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450670 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_17831 0 0 1 0 2 Nucleus 1 0.500231643863646 1 0.999536712272708 hm5C_site_19221 DeepMRMD:1;iRNA_m5C:0.999536712272708 19222 chr1 201751637 201751637 1 + C T CESC 201751618 + 201751598 201751638 41 ACAGTGCAGAGCCAGGATTCCTGGCTCCTGGAGCCCGTTCT ACAGTGCAGAGCCAGGATTCCTGGCTCCTGGAGCCCGTTTT < 41bp 1 0.319041397975866 1 0.140375226736069 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NAV1 ENSG00000134369 CDS Human protein_coding chr1:201751618 chr1:201751637 nonsynonymous SNV 0.998 2 40 hm5C_associated_SNPs_17835 0 0 1 0 0 Nucleus 1 0.500231916482686 1 0.999536167034628 hm5C_site_19222 DeepMRMD:1;iRNA_m5C:0.999536167034628 19223 chr6 7581100 7581100 1 + C A CESC 7581082 + 7581062 7581102 41 CAGGAGAGGACTGTGAAGGACCAGGATATCACGCGGTTCCA CAGGAGAGGACTGTGAAGGACCAGGATATCACGCGGTTACA < 41bp 1 0.283150395412194 1 0.21574479341507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581082 chr6:7581100 nonsynonymous SNV 0.799 0 39 hm5C_associated_SNPs_17836 0 0 1 0 0 Nucleus 1 0.500231643638115 1 0.99953671272377 hm5C_site_19223 DeepMRMD:1;iRNA_m5C:0.99953671272377 19224 chr6 7581100 7581100 1 + C A CESC 7581095 + 7581075 7581115 41 TGAAGGACCAGGATATCACGCGGTTCCAGAACTCTCTGAAA TGAAGGACCAGGATATCACGCGGTTACAGAACTCTCTGAAA < 41bp 1 0.190664870181403 1 0.307320892810822 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581095 chr6:7581100 nonsynonymous SNV 0.799 0 26 hm5C_associated_SNPs_17837 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19224 DeepMRMD:1;iRNA_m5C:0.999536712157815 19225 chr6 7581100 7581100 1 + C A CESC 7581119 + 7581099 7581139 41 TCCAGAACTCTCTGAAAGAGCTGCAGCTGCAGAAGCAGAAG TACAGAACTCTCTGAAAGAGCTGCAGCTGCAGAAGCAGAAG < 41bp 1 0.69193338717061 1 0.287331998348236 experiment 0.616133225658779 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581119 chr6:7581100 nonsynonymous SNV 0.799 0 2 hm5C_associated_SNPs_17839 0 0 1 0 0 Nucleus 1 0.50023195825819 1 0.99953608348362 hm5C_site_19225 DeepMRMD:1;iRNA_m5C:0.99953608348362 19226 chr17 78022421 78022421 1 + G A CESC 78022426 + 78022406 78022446 41 CCCACCCCAGGGAAGGAGACCTGCCAGTGTTCCAGGACCAG CCCACCCCAGGGAAGAAGACCTGCCAGTGTTCCAGGACCAG < 41bp 1 0.273768611531086 1 0.0435957610607147 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022426 chr17:78022421 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_17840 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19226 DeepMRMD:1;iRNA_m5C:0.999536712157815 19227 chr1 44058238 44058238 1 + C T CESC 44058240 + 44058220 44058260 41 TATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCA TATGGGGGTGGGCGTCTTTACCCCCACCATTGAGGCCCGCA < 41bp 1 0.150311293869613 1 0.099768340587616 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44058240 chr1:44058238 synonymous SNV . 0 19 hm5C_associated_SNPs_17841 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19227 DeepMRMD:1;iRNA_m5C:0.999536712157815 19228 chr11 309109 309109 1 + T C CESC 309126 + 309106 309146 41 ATCTTCATGACCATTCTGCTCATCATCATCCCAGTGTTGGT ATCCTCATGACCATTCTGCTCATCATCATCCCAGTGTTGGT < 41bp 1 0.438399816642613 1 0.031124621629715 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFITM2 ENSG00000185201 CDS Human protein_coding chr11:309126 chr11:309109 nonsynonymous SNV 0.004 1 4 hm5C_associated_SNPs_17842 0 0 1 0 1 Endoplasmic reticulum 1 0.500232372342748 1 0.999535255314504 hm5C_site_19228 DeepMRMD:1;iRNA_m5C:0.999535255314504 19229 chr19 1912867 1912867 1 + A G CESC 1912858 + 1912838 1912878 41 CTGCTCCTTCGCCCCGGCCGCTGCCCCCCAGGCCGTCCGCG CTGCTCCTTCGCCCCGGCCGCTGCCCCCCGGGCCGTCCGCG < 41bp 1 0.123752453420573 1 0.390876531600952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAT3 ENSG00000213638 CDS Human protein_coding chr19:1912858 chr19:1912867 nonsynonymous SNV 0.003 0 30 hm5C_associated_SNPs_17843 0 0 1 0 0 exosome 1 0.500231643921185 1 0.99953671215763 hm5C_site_19229 DeepMRMD:1;iRNA_m5C:0.99953671215763 19230 chr2 86712946 86712946 1 + C T CESC 86712950 + 86712930 86712970 41 GCCAAACTACTTTGTTCGGCCAGATCTGGGCCCCAAGATGT GCCAAACTACTTTGTTTGGCCAGATCTGGGCCCCAAGATGT < 41bp 1 0.293635050032219 1 0.385004103183746 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM3A ENSG00000115548 CDS Human protein_coding chr2:86712950 chr2:86712946 nonsynonymous SNV 0.994 5 17 hm5C_associated_SNPs_17844 0 0 1 0 2 chromatin 1 0.50023164391275 1 0.999536712174501 hm5C_site_19230 DeepMRMD:1;iRNA_m5C:0.999536712174501 19231 chr7 100210442 100210442 1 + G A CESC 100210428 + 100210408 100210448 41 AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGG AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGAAGCTGG < 41bp 1 0.372898563943667 1 0.289383500814438 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210428 chr7:100210442 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_17845 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19231 DeepMRMD:1;iRNA_m5C:0.999536712157815 19232 chr7 100210442 100210442 1 + G A CESC 100210430 + 100210410 100210450 41 CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTG CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGAAGCTGGTG < 41bp 1 0.693706024534206 1 0.143152385950089 experiment 0.612587950931588 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210430 chr7:100210442 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_17846 0 0 1 0 1 Cytosol 1 0.500231643921086 1 0.999536712157829 hm5C_site_19232 DeepMRMD:1;iRNA_m5C:0.999536712157829 19233 chr7 100210442 100210442 1 + G A CESC 100210431 + 100210411 100210451 41 CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGG CTGCATGCGCCGTGGGGCGCCCCAGGACCAGAAGCTGGTGG < 41bp 1 0.497832745675817 1 0.596203625202179 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210431 chr7:100210442 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_17847 0 0 1 0 1 Cytosol 1 0.500231643921242 0.807592749595642 0.999536712157516 hm5C_site_19233 DeepMRMD:0.807592749595642;iRNA_m5C:0.999536712157516 19234 chr7 100210442 100210442 1 + G A CESC 100210432 + 100210412 100210452 41 TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGG TGCATGCGCCGTGGGGCGCCCCAGGACCAGAAGCTGGTGGG < 41bp 1 0.624898193702754 1 0.779690742492676 experiment 0.750203612594492 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210432 chr7:100210442 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_17848 0 0 1 0 1 Cytosol 1 0.500231643921092 0.440618515014648 0.999536712157815 hm5C_site_19234 DeepMRMD:0.440618515014648;iRNA_m5C:0.999536712157815 19235 chr7 100210442 100210442 1 + G A CESC 100210460 + 100210440 100210480 41 AGGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG AGAAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG < 41bp 1 0.303543716154609 1 0.140268415212631 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210460 chr7:100210442 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_17849 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_19235 DeepMRMD:1;iRNA_m5C:0.999536712157815 19236 chr7 100210442 100210442 1 + G A CESC 100210461 + 100210441 100210481 41 GGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG GAAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG < 41bp 1 0.433470974297572 1 0.10816752910614 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210461 chr7:100210442 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_17850 0 0 1 0 1 Cytosol 1 0.500231638158592 1 0.999536723682817 hm5C_site_19236 DeepMRMD:1;iRNA_m5C:0.999536723682817 19237 chr7 100210442 100210442 1 + G A CESC 100210462 + 100210442 100210482 41 GAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG AAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG < 41bp 1 0.397840716772914 1 0.422591388225555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210462 chr7:100210442 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_17851 0 0 1 0 1 Cytosol 1 0.500231643922607 1 0.999536712154786 hm5C_site_19237 DeepMRMD:1;iRNA_m5C:0.999536712154786 19238 chr1 156202177 156202177 1 + C G CESC 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATGACACAGCAAATGTATGACAAGTTTATA < 41bp 1 0.150617627492317 1 0.378735959529877 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202177 nonsynonymous SNV 0.990 3 26 hm5C_associated_SNPs_17852 0 0 0 3 2 unknown 1 0.500231633801433 1 0.999536732397134 hm5C_site_19238 DeepMRMD:1;iRNA_m5C:0.999536732397134 19239 chr19 40884002 40884002 1 + G A CESC 40884016 + 40883996 40884036 41 TTTCCTGAGGGACTGGGACTCCCCTTACAGCCATGACCTTG TTTCCTAAGGGACTGGGACTCCCCTTACAGCCATGACCTTG < 41bp 1 0.469114963268665 1 0.161987245082855 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40884016 chr19:40884002 synonymous SNV . 0 7 hm5C_associated_SNPs_17853 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19239 DeepMRMD:1;iRNA_m5C:0.999536712157815 19240 chr19 40884002 40884002 1 + G A CESC 40884018 + 40883998 40884038 41 TCCTGAGGGACTGGGACTCCCCTTACAGCCATGACCTTGAC TCCTAAGGGACTGGGACTCCCCTTACAGCCATGACCTTGAC < 41bp 1 0.259193548166149 1 0.0655437409877777 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40884018 chr19:40884002 synonymous SNV . 0 5 hm5C_associated_SNPs_17854 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19240 DeepMRMD:1;iRNA_m5C:0.999536712157815 19241 chr1 145360584 145360584 1 + G A CESC 145360594 + 145360574 145360614 41 GATGAGAAAGGGCCTGAAGTCTTGCAGGACTCACTGGATAG GATGAGAAAGAGCCTGAAGTCTTGCAGGACTCACTGGATAG < 41bp 1 0.145840994032921 1 0.0889996290206909 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBPF19 ENSG00000163386 CDS Human other chr1:145360594 chr1:145360584 nonsynonymous SNV . 0 11 hm5C_associated_SNPs_17855 0 0 0 0 0 exosome 1 0.500231644231077 1 0.999536711537846 hm5C_site_19241 DeepMRMD:1;iRNA_m5C:0.999536711537846 19242 chr17 25904637 25904637 1 + C T CESC 25904657 + 25904637 25904677 41 CACCTGCCTGCGGAAGGTGACAGGCCTGGGTACGTGGGGCC TACCTGCCTGCGGAAGGTGACAGGCCTGGGTACGTGGGGCC < 41bp 1 0.559381342277386 1 0.806182384490967 experiment 0.881237315445228 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KSR1 ENSG00000141068 CDS Human protein_coding chr17:25904657 chr17:25904637 synonymous SNV . 0 1 hm5C_associated_SNPs_17856 0 0 1 0 1 chromatin 1 0.500231643921093 0.387635231018066 0.999536712157815 hm5C_site_19242 DeepMRMD:0.387635231018066;iRNA_m5C:0.999536712157815 19243 chr7 100210422 100210422 1 + G C CESC 100210428 + 100210408 100210448 41 AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGG AGCCTGCATGCGCCCTGGGGCGCCCCAGGACCAGGAGCTGG < 41bp 1 0.410527332061924 1 0.178643703460693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210428 chr7:100210422 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_17857 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19243 DeepMRMD:1;iRNA_m5C:0.999536712157815 19244 chr7 100210422 100210422 1 + G C CESC 100210430 + 100210410 100210450 41 CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTG CCTGCATGCGCCCTGGGGCGCCCCAGGACCAGGAGCTGGTG < 41bp 1 0.659777568841778 1 0.108204871416092 experiment 0.680444862316445 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210430 chr7:100210422 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_17858 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19244 DeepMRMD:1;iRNA_m5C:0.999536712157815 19245 chr7 100210422 100210422 1 + G C CESC 100210431 + 100210411 100210451 41 CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGG CTGCATGCGCCCTGGGGCGCCCCAGGACCAGGAGCTGGTGG < 41bp 1 0.487001751615992 1 0.733282148838043 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210431 chr7:100210422 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_17859 0 0 1 0 1 Cytosol 1 0.500231643920992 0.533435702323914 0.999536712158017 hm5C_site_19245 DeepMRMD:0.533435702323914;iRNA_m5C:0.999536712158017 19246 chr7 100210422 100210422 1 + G C CESC 100210432 + 100210412 100210452 41 TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGG TGCATGCGCCCTGGGGCGCCCCAGGACCAGGAGCTGGTGGG < 41bp 1 0.58432392730896 1 0.671273589134216 experiment 0.83135214538208 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210432 chr7:100210422 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_17860 0 0 1 0 1 Cytosol 1 0.500231643921092 0.657452821731568 0.999536712157815 hm5C_site_19246 DeepMRMD:0.657452821731568;iRNA_m5C:0.999536712157815 19247 chr22 38352859 38352859 1 + C T CESC 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTTAGCC < 41bp 1 0.591050457949479 1 0.579429566860199 experiment 0.817899084101042 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352859 stopgain 0.146 0 37 hm5C_associated_SNPs_17861 0 0 1 0 2 Ribosome 1 0.500231644070422 0.841140866279602 0.999536711859155 hm5C_site_19247 DeepMRMD:0.841140866279602;iRNA_m5C:0.999536711859155 19248 chr5 231090 231090 1 + A C CESC 231073 + 231053 231093 41 CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAG CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTCGAG < 41bp 1 0.232562925612866 1 0.224183887243271 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:231073 chr5:231090 synonymous SNV . 0 38 hm5C_associated_SNPs_17862 0 0 1 0 2 Nucleus 1 0.500231707855428 1 0.999536584289143 hm5C_site_19248 DeepMRMD:1;iRNA_m5C:0.999536584289143 19249 chr6 108497844 108497844 1 + G A CESC 108497862 + 108497842 108497882 41 CCGCGGTCACGCAGCTGGAGCCGCACGGCCTGGAGCTGGCC CCACGGTCACGCAGCTGGAGCCGCACGGCCTGGAGCTGGCC < 41bp 1 0.533534343222487 1 0.077388197183609 experiment 0.932931313555025 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108497862 chr6:108497844 nonsynonymous SNV 0.954 0 3 hm5C_associated_SNPs_17863 0 0 0 0 1 exosome 1 0.500231644747093 1 0.999536710505814 hm5C_site_19249 DeepMRMD:1;iRNA_m5C:0.999536710505814 19250 chr6 41566592 41566592 1 + T C CESC 41566581 + 41566561 41566601 41 GCAGAGGAAGACAGGCAGCCCGGGCCTCCCCTGGGCGCCCC GCAGAGGAAGACAGGCAGCCCGGGCCTCCCCCGGGCGCCCC < 41bp 1 0.653027263632383 1 0.732714295387268 experiment 0.693945472735235 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41566581 chr6:41566592 nonsynonymous SNV 0.008 3 32 hm5C_associated_SNPs_17864 0 0 0 0 0 Nucleus 1 0.500231643921089 0.534571409225464 0.999536712157822 hm5C_site_19250 DeepMRMD:0.534571409225464;iRNA_m5C:0.999536712157822 19251 chr6 41566592 41566592 1 + T C CESC 41566589 + 41566569 41566609 41 AGACAGGCAGCCCGGGCCTCCCCTGGGCGCCCCTAACCCCA AGACAGGCAGCCCGGGCCTCCCCCGGGCGCCCCTAACCCCA < 41bp 1 0.47264593419912 1 0.452070087194443 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41566589 chr6:41566592 nonsynonymous SNV 0.008 3 24 hm5C_associated_SNPs_17865 0 0 0 0 0 Nucleus 1 0.500231643909007 1 0.999536712181987 hm5C_site_19251 DeepMRMD:1;iRNA_m5C:0.999536712181987 19252 chr7 4824613 4824613 1 + C G CESC 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGGCCCGGGA < 41bp 1 0.1228077918567 1 0.202209532260895 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824613 nonsynonymous SNV 0.929 1 34 hm5C_associated_SNPs_17866 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19252 DeepMRMD:1;iRNA_m5C:0.999536712157815 19253 chr7 4824613 4824613 1 + C G CESC 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCCGGCCGCCTGCTGCCGGCCCGGGAGCGGCTTCGG < 41bp 1 0.321748885794218 1 0.522296071052551 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824613 nonsynonymous SNV 0.929 1 24 hm5C_associated_SNPs_17867 0 0 1 0 2 chromatin 1 0.500231644516431 0.955407857894898 0.999536710967137 hm5C_site_19253 DeepMRMD:0.955407857894898;iRNA_m5C:0.999536710967137 19254 chr6 80744991 80744991 1 + C T CESC 80744989 + 80744969 80745009 41 TTGTTTAATTGCAGTGAAATCACGGACCAGTACATCTACAT TTGTTTAATTGCAGTGAAATCATGGACCAGTACATCTACAT < 41bp 1 0.525777028501912 1 0.887823939323425 experiment 0.948445942996176 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTK ENSG00000112742 CDS Human protein_coding chr6:80744989 chr6:80744991 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_17868 0 0 1 0 1 chromatin 1 0.500231659407697 0.22435212135315 0.999536681184607 hm5C_site_19254 DeepMRMD:0.22435212135315;iRNA_m5C:0.999536681184607 19255 chr2 75107492 75107492 1 + G T CESC 75107484 + 75107464 75107504 41 GGATGGCAGTGGCAAAGGTGCAGCCATGGTGACAGCAGTGG GGATGGCAGTGGCAAAGGTGCAGCCATGTTGACAGCAGTGG < 41bp 1 0.349184471294142 1 0.0907371044158936 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HK2 ENSG00000159399 CDS Human protein_coding chr2:75107484 chr2:75107492 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_17869 0 0 0 0 0 Nucleus 1 0.500231643901268 1 0.999536712197465 hm5C_site_19255 DeepMRMD:1;iRNA_m5C:0.999536712197465 19256 chr12 113730871 113730871 1 + G C CESC 113730854 + 113730834 113730874 41 GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATA GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGACATA < 41bp 1 0.0975192317714688 1 0.0350844264030457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113730854 chr12:113730871 nonsynonymous SNV 0.759 0 38 hm5C_associated_SNPs_17870 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19256 DeepMRMD:1;iRNA_m5C:0.999536712157815 19257 chr11 61490974 61490974 1 + A T CESC 61490991 + 61490971 61491011 41 CCCACGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG CCCTCGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG < 41bp 1 0.44923095139299 1 0.845538735389709 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490991 chr11:61490974 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_17871 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921087 0.308922529220582 0.999536712157826 hm5C_site_19257 DeepMRMD:0.308922529220582;iRNA_m5C:0.999536712157826 19258 chr7 73969520 73969520 1 + G A CESC 73969540 + 73969520 73969560 41 GAGGGAGTCAAAGAGCCCATCATGGATAGTCAAGGTACCCA AAGGGAGTCAAAGAGCCCATCATGGATAGTCAAGGTACCCA < 41bp 1 0.381092844889617 1 0.148881196975708 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969540 chr7:73969520 nonsynonymous SNV 0.958 1 1 hm5C_associated_SNPs_17872 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19258 DeepMRMD:1;iRNA_m5C:0.999536712157815 19259 chr11 6631790 6631790 1 + G A CESC 6631793 + 6631773 6631813 41 TGAAGACCCTGCAAAGCGACCCAAATTTGACATGATTGTGC TGAAGACCCTGCAAAGCAACCCAAATTTGACATGATTGTGC < 41bp 1 0.275070790660645 1 0.0712427198886871 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6631793 chr11:6631790 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_17873 0 0 1 0 1 Endoplasmic reticulum 1 0.500231622028079 1 0.999536755943842 hm5C_site_19259 DeepMRMD:1;iRNA_m5C:0.999536755943842 19260 chrX 128695239 128695239 1 + G C CESC 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGACAGGTT < 41bp 1 0.0911829547674678 1 0.074910044670105 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695239 nonsynonymous SNV 0.988 2 36 hm5C_associated_SNPs_17874 0 0 1 0 2 Cytosol 1 0.50017155679838 1 0.99965688640324 hm5C_site_19260 DeepMRMD:1;iRNA_m5C:0.99965688640324 19261 chr6 25551239 25551239 1 + G C CESC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCACCGAAAACATTTCTAT < 41bp 1 0.447326492445712 1 0.282079756259918 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551239 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_17876 0 0 0 0 1 unknown 1 0.500231645633546 1 0.999536708732909 hm5C_site_19261 DeepMRMD:1;iRNA_m5C:0.999536708732909 19262 chr11 119045980 119045980 1 + C G CESC 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATGA < 41bp 1 0.344021158317805 1 0.423903077840805 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045980 nonsynonymous SNV 0.998 2 40 hm5C_associated_SNPs_17877 0 0 1 0 1 exosome 1 0.500231643944041 1 0.999536712111919 hm5C_site_19262 DeepMRMD:1;iRNA_m5C:0.999536712111919 19263 chr3 41275108 41275108 1 + C G CESC 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACCTGTGCAGCTGGAATTCTTTGTAACCTCACTTGCAAT < 41bp 1 0.264151039792226 1 0.314148753881454 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275108 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_17878 0 0 1 0 1 Nucleus 1 0.500231643920832 1 0.999536712158336 hm5C_site_19263 DeepMRMD:1;iRNA_m5C:0.999536712158336 19264 chr17 27938969 27938969 1 + G C CESC 27938953 + 27938933 27938973 41 GCCATCACTGCAGAAGAATACTTCAACCCCAACTTTGAGCT GCCATCACTGCAGAAGAATACTTCAACCCCAACTTTCAGCT < 41bp 1 0.328853932194364 1 0.249121427536011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27938953 chr17:27938969 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_17879 0 0 1 0 2 chromatin 1 0.500231649691656 1 0.999536700616688 hm5C_site_19264 DeepMRMD:1;iRNA_m5C:0.999536700616688 19265 chr7 33014871 33014871 1 + C T CESC 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTTAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG < 41bp 1 0.524284457935168 1 0.736395001411438 experiment 0.951431084129663 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014871 stopgain 0.998 1 4 hm5C_associated_SNPs_17880 0 0 1 1 1 Ribosome 1 0.500231643921054 0.527209997177124 0.999536712157893 hm5C_site_19265 DeepMRMD:0.527209997177124;iRNA_m5C:0.999536712157893 19266 chr6 36564728 36564728 1 + C T CESC 36564724 + 36564704 36564744 41 TCCCCGAGATGCAGCTGATGCAGTCCGAGAGCTAGATGGAA TCCCCGAGATGCAGCTGATGCAGTTCGAGAGCTAGATGGAA < 41bp 1 0.340271182153389 1 0.182781428098679 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36564724 chr6:36564728 synonymous SNV . 0 25 hm5C_associated_SNPs_17881 0 0 1 0 1 Ribosome 1 0.500231540297384 1 0.999536919405231 hm5C_site_19266 DeepMRMD:1;iRNA_m5C:0.999536919405231 19267 chr20 47691934 47691934 1 + C A CESC 47691921 + 47691901 47691941 41 ATGCAAGTTTTTTGAGGGACCTGTGACAGGAATCTTCTCTG ATGCAAGTTTTTTGAGGGACCTGTGACAGGAATATTCTCTG < 41bp 1 0.486920887937886 1 0.237718135118484 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47691921 chr20:47691934 synonymous SNV . 0 34 hm5C_associated_SNPs_17883 0 0 1 0 1 Nucleus 1 0.500232968706839 1 0.999534062586322 hm5C_site_19267 DeepMRMD:1;iRNA_m5C:0.999534062586322 19268 chr6 32134696 32134696 1 + C T CESC 32134701 + 32134681 32134721 41 CCTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTC CCTCAGCCATCTGCGTCAAGCCTTGCCTGAACGGAGGCGTC < 41bp 1 0.0620264518929349 1 0.038166880607605 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134701 chr6:32134696 nonsynonymous SNV 0.994 0 16 hm5C_associated_SNPs_17884 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19268 DeepMRMD:1;iRNA_m5C:0.999536712157815 19269 chr6 32134696 32134696 1 + C T CESC 32134702 + 32134682 32134722 41 CTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTCT CTCAGCCATCTGCGTCAAGCCTTGCCTGAACGGAGGCGTCT < 41bp 1 0.202785606728345 1 0.0347771942615509 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134702 chr6:32134696 nonsynonymous SNV 0.994 0 15 hm5C_associated_SNPs_17885 0 0 1 0 2 chromatin 1 0.500231645211957 1 0.999536709576085 hm5C_site_19269 DeepMRMD:1;iRNA_m5C:0.999536709576085 19270 chr6 44221279 44221279 1 + G T CESC 44221288 + 44221268 44221308 41 CAGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGAT CAGTTCCTGATTAGATCCCCCCTCTCGAGGGCGATGAGGAT < 41bp 1 0.0323908330181465 1 0.0409020185470581 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221288 chr6:44221279 stopgain 0.997 0 12 hm5C_associated_SNPs_17886 0 0 1 0 1 Nucleus 1 0.50023164392107 1 0.99953671215786 hm5C_site_19270 DeepMRMD:1;iRNA_m5C:0.99953671215786 19271 chr6 44221279 44221279 1 + G T CESC 44221289 + 44221269 44221309 41 AGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATG AGTTCCTGATTAGATCCCCCCTCTCGAGGGCGATGAGGATG < 41bp 1 0.25058807428027 1 0.0932473540306091 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221289 chr6:44221279 stopgain 0.997 0 11 hm5C_associated_SNPs_17887 0 0 1 0 1 Nucleus 1 0.500231643921133 1 0.999536712157734 hm5C_site_19271 DeepMRMD:1;iRNA_m5C:0.999536712157734 19272 chr16 11066827 11066827 1 + G A CESC 11066834 + 11066814 11066854 41 GCACTACATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA GCACTACATCCGAAATAAAACTGCTGTTCCTTACTTCTCCA < 41bp 1 0.342471351488011 1 0.0396578907966614 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11066834 chr16:11066827 nonsynonymous SNV 0.998 3 14 hm5C_associated_SNPs_17888 0 0 1 0 2 Cytosol 1 0.500231647654475 1 0.999536704691051 hm5C_site_19272 DeepMRMD:1;iRNA_m5C:0.999536704691051 19273 chr7 96639257 96639257 1 + G A CESC 96639277 + 96639257 96639297 41 GGCCAAGGGTGTCAGTATGCCCCCCAACAGCTACATGCCTG AGCCAAGGGTGTCAGTATGCCCCCCAACAGCTACATGCCTG < 41bp 1 0.251825190115202 1 0.120379686355591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DLX6 ENSG00000006377 CDS Human protein_coding chr7:96639277 chr7:96639257 synonymous SNV . 0 1 hm5C_associated_SNPs_17889 0 0 0 0 0 cytosol 1 0.500231643841473 1 0.999536712317054 hm5C_site_19273 DeepMRMD:1;iRNA_m5C:0.999536712317054 19274 chr11 68131409 68131409 1 + T A CESC 68131406 + 68131386 68131426 41 GCTGAGCCAGGAGCGGCAGCCTTTCTGTGAGTGCCGGCTGG GCTGAGCCAGGAGCGGCAGCCTTACTGTGAGTGCCGGCTGG < 41bp 1 0.149567336558328 1 0.093495100736618 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68131406 chr11:68131409 nonsynonymous SNV 0.977 1 24 hm5C_associated_SNPs_17891 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643855552 1 0.999536712288896 hm5C_site_19274 DeepMRMD:1;iRNA_m5C:0.999536712288896 19275 chr11 68131409 68131409 1 + T A CESC 68131410 + 68131390 68131430 41 AGCCAGGAGCGGCAGCCTTTCTGTGAGTGCCGGCTGGGGCG AGCCAGGAGCGGCAGCCTTACTGTGAGTGCCGGCTGGGGCG < 41bp 1 0.543898275630089 1 0.343025147914886 experiment 0.912203448739821 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68131410 chr11:68131409 nonsynonymous SNV 0.977 1 20 hm5C_associated_SNPs_17892 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19275 DeepMRMD:1;iRNA_m5C:0.999536712157815 19276 chrX 135291484 135291484 1 + C T CESC 135291501 + 135291481 135291521 41 TCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC TCTTACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC < 41bp 1 0.0769881601932886 1 0.173352688550949 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291501 chrX:135291484 synonymous SNV . 0 4 hm5C_associated_SNPs_17893 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19276 DeepMRMD:1;iRNA_m5C:0.999536712157815 19277 chrX 135291484 135291484 1 + C T CESC 135291502 + 135291482 135291522 41 CTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC CTTACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC < 41bp 1 0.219021410378394 1 0.0871595740318298 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291502 chrX:135291484 synonymous SNV . 0 3 hm5C_associated_SNPs_17894 0 0 0 0 1 chromatin 1 0.500231643921007 1 0.999536712157986 hm5C_site_19277 DeepMRMD:1;iRNA_m5C:0.999536712157986 19278 chr1 207510124 207510124 1 + C G CESC 207510119 + 207510099 207510139 41 AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCACAA AACTACAGAAGTCTCACCAACTTCTGAGAAAACCACCACAA < 41bp 1 0.432278578537792 1 0.714024066925049 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207510119 chr1:207510124 nonsynonymous SNV 0.100 2 26 hm5C_associated_SNPs_17895 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.571951866149902 0.999536712157815 hm5C_site_19278 DeepMRMD:0.571951866149902;iRNA_m5C:0.999536712157815 19279 chr19 46003774 46003774 1 + C G CESC 46003772 + 46003752 46003792 41 ACAGTTTTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT ACAGTTTTCAGGACTCTGGCCTGAGAGGACATCCCAGATTT < 41bp 1 0.56508504802136 1 0.295977771282196 experiment 0.86982990395728 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003772 chr19:46003774 stopgain 0.999 0 23 hm5C_associated_SNPs_17897 0 0 0 0 2 nucleolus 1 0.500231643921093 1 0.999536712157815 hm5C_site_19279 DeepMRMD:1;iRNA_m5C:0.999536712157815 19280 chr19 46003774 46003774 1 + C G CESC 46003784 + 46003764 46003804 41 ACTCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGGGGG ACTCTGGCCTGAGAGGACATCCCAGATTTACCTCCTGGGGG < 41bp 1 0.395610917743406 1 0.316212952136993 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003784 chr19:46003774 stopgain 0.999 0 11 hm5C_associated_SNPs_17898 0 0 0 0 2 nucleolus 1 0.500222681216197 1 0.999554637567607 hm5C_site_19280 DeepMRMD:1;iRNA_m5C:0.999554637567607 19281 chr19 10657564 10657564 1 + G T CESC 10657575 + 10657555 10657595 41 GCTGTCAGGGTCAGCCTCTCCCAGCCGGTACCATGGGCCTG GCTGTCAGGTTCAGCCTCTCCCAGCCGGTACCATGGGCCTG < 41bp 1 0.414642337676417 1 0.257621318101883 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4D ENSG00000130734 CDS Human protein_coding chr19:10657575 chr19:10657564 synonymous SNV . 0 10 hm5C_associated_SNPs_17899 0 0 0 0 1 Ribosome 1 0.500231643918772 1 0.999536712162457 hm5C_site_19281 DeepMRMD:1;iRNA_m5C:0.999536712162457 19282 chr16 23578363 23578363 1 + C T CESC 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAAAAAATGTGGTCAGTGAACCTATTGAAGGACATGAAGAC < 41bp 1 0.0924726569222001 1 0.117422729730606 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578363 synonymous SNV . 0 26 hm5C_associated_SNPs_17900 0 0 1 0 2 Ribosome 1 0.500231643921285 1 0.99953671215743 hm5C_site_19282 DeepMRMD:1;iRNA_m5C:0.99953671215743 19283 chr5 21497232 21497232 1 + G C CESC 21497215 + 21497195 21497235 41 TGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAAC TGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGACAAC < 41bp 1 0.286015592983598 1 0.824193477630615 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21497215 chr5:21497232 . . 0 38 hm5C_associated_SNPs_17901 0 0 1 0 0 unknown 1 0.500228929439191 0.35161304473877 0.999542141121618 hm5C_site_19283 DeepMRMD:0.35161304473877;iRNA_m5C:0.999542141121618 19284 chr5 179151711 179151711 1 + G A CESC 179151698 + 179151678 179151718 41 GTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAG GTATAAGAAAACTGATGCACCTCAACCGGATGTAAAGGAAG < 41bp 1 0.505180658193162 1 0.476354748010635 experiment 0.989638683613675 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151698 chr5:179151711 synonymous SNV . 0 34 hm5C_associated_SNPs_17902 0 0 1 0 2 Nucleus 1 0.500240014832189 1 0.999519970335622 hm5C_site_19284 DeepMRMD:1;iRNA_m5C:0.999519970335622 19285 chr5 179151711 179151711 1 + G A CESC 179151700 + 179151680 179151720 41 ATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAG ATAAGAAAACTGATGCACCTCAACCGGATGTAAAGGAAGAG < 41bp 1 0.248612934728224 1 0.193378061056137 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151700 chr5:179151711 synonymous SNV . 0 32 hm5C_associated_SNPs_17903 0 0 1 0 2 Nucleus 1 0.500231652595938 1 0.999536694808124 hm5C_site_19285 DeepMRMD:1;iRNA_m5C:0.999536694808124 19286 chr5 179151711 179151711 1 + G A CESC 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGCACCTCAACCGGATGTAAAGGAAGAGGAAG < 41bp 1 0.498066983364009 1 0.590577304363251 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151711 synonymous SNV . 0 28 hm5C_associated_SNPs_17904 0 0 1 0 2 Nucleus 1 0.500231637181381 0.818845391273498 0.999536725637237 hm5C_site_19286 DeepMRMD:0.818845391273498;iRNA_m5C:0.999536725637237 19287 chr1 984694 984694 1 + G T CESC 984697 + 984677 984717 41 TGGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCAC TGGCACCGCCTGGAGCTTTCCCGGCACTGGCGCCGGGGCAC < 41bp 1 0.352259391476932 1 0.770837783813477 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984697 chr1:984694 synonymous SNV . 0 18 hm5C_associated_SNPs_17905 0 0 1 0 1 Endoplasmic reticulum 1 0.500231628410045 0.458324432373046 0.999536743179909 hm5C_site_19287 DeepMRMD:0.458324432373046;iRNA_m5C:0.999536743179909 19288 chr1 984694 984694 1 + G T CESC 984701 + 984681 984721 41 ACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCACCCTC ACCGCCTGGAGCTTTCCCGGCACTGGCGCCGGGGCACCCTC < 41bp 1 0.222373450678542 1 0.334635525941849 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984701 chr1:984694 synonymous SNV . 0 14 hm5C_associated_SNPs_17906 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643791597 1 0.999536712416806 hm5C_site_19288 DeepMRMD:1;iRNA_m5C:0.999536712416806 19289 chr1 984694 984694 1 + G T CESC 984709 + 984689 984729 41 GAGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGA GAGCTTTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGA < 41bp 1 0.40195136240585 1 0.787657260894775 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984709 chr1:984694 synonymous SNV . 0 6 hm5C_associated_SNPs_17907 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921077 0.42468547821045 0.999536712157846 hm5C_site_19289 DeepMRMD:0.42468547821045;iRNA_m5C:0.999536712157846 19290 chr1 984694 984694 1 + G T CESC 984710 + 984690 984730 41 AGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGAT AGCTTTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGAT < 41bp 1 0.471770558760449 1 0.832979679107666 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984710 chr1:984694 synonymous SNV . 0 5 hm5C_associated_SNPs_17908 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.334040641784668 0.999536712157815 hm5C_site_19290 DeepMRMD:0.334040641784668;iRNA_m5C:0.999536712157815 19291 chr2 201499608 201499608 1 + C T CESC 201499618 + 201499598 201499638 41 TGGATGTCTACGTGTCCACACAGTTTCCCAAATATATACAG TGGATGTCTATGTGTCCACACAGTTTCCCAAATATATACAG < 41bp 1 0.219705876431925 1 0.0526273846626282 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201499618 chr2:201499608 synonymous SNV . 0 11 hm5C_associated_SNPs_17909 0 0 0 0 2 Endoplasmic reticulum 1 0.500230945794326 1 0.999538108411348 hm5C_site_19291 DeepMRMD:1;iRNA_m5C:0.999538108411348 19292 chr7 101813778 101813778 1 + C T CESC 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GCTCTCATTGGCCAATCACTCCCTCCAGCTGGCCTCACAGA < 41bp 1 0.0561730563450632 1 0.543950140476227 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813778 nonsynonymous SNV 0.972 1 9 hm5C_associated_SNPs_17910 0 0 1 0 2 Exosome 1 0.500231921254869 0.912099719047546 0.999536157490261 hm5C_site_19292 DeepMRMD:0.912099719047546;iRNA_m5C:0.999536157490261 19293 chr9 135919210 135919210 1 + G A CESC 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTCCGGCCCGAGAAGAAGGCCTTTTTCCACCAGGAGCTGCC < 41bp 1 0.043657987047937 1 0.0144115686416626 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919210 nonsynonymous SNV 0.778 1 16 hm5C_associated_SNPs_17911 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_19293 DeepMRMD:1;iRNA_m5C:0.999536712157815 19294 chr10 118314792 118314792 1 + C T CESC 118314776 + 118314756 118314796 41 CCAAATTTGTGGATGTAATTCACACGGATGGTGCCCCCATA CCAAATTTGTGGATGTAATTCACACGGATGGTGCCCTCATA < 41bp 1 0.601267346833972 1 0.116984367370605 experiment 0.797465306332056 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314776 chr10:118314792 nonsynonymous SNV 0.015 5 37 hm5C_associated_SNPs_17913 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19294 DeepMRMD:1;iRNA_m5C:0.999536712157815 19295 chr10 118314792 118314792 1 + C T CESC 118314780 + 118314760 118314800 41 ATTTGTGGATGTAATTCACACGGATGGTGCCCCCATAGTCC ATTTGTGGATGTAATTCACACGGATGGTGCCCTCATAGTCC < 41bp 1 0.683227902452531 1 0.172863692045212 experiment 0.633544195094937 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314780 chr10:118314792 nonsynonymous SNV 0.015 5 33 hm5C_associated_SNPs_17914 0 0 0 0 1 unknown 1 0.500231713011071 1 0.999536573977858 hm5C_site_19295 DeepMRMD:1;iRNA_m5C:0.999536573977858 19296 chr10 118314792 118314792 1 + C T CESC 118314789 + 118314769 118314809 41 TGTAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGG TGTAATTCACACGGATGGTGCCCTCATAGTCCCCAATTTGG < 41bp 1 0.0631982773289515 1 0.0176915526390076 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314789 chr10:118314792 nonsynonymous SNV 0.015 5 24 hm5C_associated_SNPs_17915 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157817 hm5C_site_19296 DeepMRMD:1;iRNA_m5C:0.999536712157817 19297 chr10 118314792 118314792 1 + C T CESC 118314790 + 118314770 118314810 41 GTAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGG GTAATTCACACGGATGGTGCCCTCATAGTCCCCAATTTGGG < 41bp 1 0.234879376266019 1 0.031726062297821 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314790 chr10:118314792 nonsynonymous SNV 0.015 5 23 hm5C_associated_SNPs_17916 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19297 DeepMRMD:1;iRNA_m5C:0.999536712157815 19298 chr10 118314792 118314792 1 + C T CESC 118314791 + 118314771 118314811 41 TAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGT TAATTCACACGGATGGTGCCCTCATAGTCCCCAATTTGGGT < 41bp 1 0.259837243973678 1 0.0830861032009125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314791 chr10:118314792 nonsynonymous SNV 0.015 5 22 hm5C_associated_SNPs_17917 0 0 0 0 1 unknown 1 0.500231643894126 1 0.999536712211748 hm5C_site_19298 DeepMRMD:1;iRNA_m5C:0.999536712211748 19299 chr10 118314792 118314792 1 + C T CESC 118314793 + 118314773 118314813 41 ATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGTGA ATTCACACGGATGGTGCCCTCATAGTCCCCAATTTGGGTGA < 41bp 1 0.614062350948209 1 0.47121524810791 experiment 0.771875298103583 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314793 chr10:118314792 nonsynonymous SNV 0.015 5 20 hm5C_associated_SNPs_17918 0 0 0 0 1 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_19299 DeepMRMD:1;iRNA_m5C:0.999536712157818 19300 chr10 118314792 118314792 1 + C T CESC 118314800 + 118314780 118314820 41 CGGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTC CGGATGGTGCCCTCATAGTCCCCAATTTGGGTGAGTTCCTC < 41bp 1 0.56554865588407 1 0.121490985155106 experiment 0.868902688231859 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314800 chr10:118314792 nonsynonymous SNV 0.015 5 13 hm5C_associated_SNPs_17920 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19300 DeepMRMD:1;iRNA_m5C:0.999536712157815 19301 chr10 118314792 118314792 1 + C T CESC 118314801 + 118314781 118314821 41 GGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTCA GGATGGTGCCCTCATAGTCCCCAATTTGGGTGAGTTCCTCA < 41bp 1 0.180280239027754 1 0.0393093824386597 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314801 chr10:118314792 nonsynonymous SNV 0.015 5 12 hm5C_associated_SNPs_17921 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19301 DeepMRMD:1;iRNA_m5C:0.999536712157815 19302 chr10 118314792 118314792 1 + C T CESC 118314802 + 118314782 118314822 41 GATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTCAA GATGGTGCCCTCATAGTCCCCAATTTGGGTGAGTTCCTCAA < 41bp 1 0.331819426492777 1 0.213951170444489 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314802 chr10:118314792 nonsynonymous SNV 0.015 5 11 hm5C_associated_SNPs_17922 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19302 DeepMRMD:1;iRNA_m5C:0.999536712157815 19303 chr6 26022062 26022062 1 + C T CESC 26022047 + 26022027 26022067 41 CGTGGCGGTGTGAAGCGGATCTCTGGTCTGATCTACGAGGA CGTGGCGGTGTGAAGCGGATCTCTGGTCTGATCTATGAGGA < 41bp 1 0.67050840474955 1 0.387178927659988 experiment 0.6589831905009 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H4A ENSG00000196176 CDS Human other chr6:26022047 chr6:26022062 synonymous SNV . 0 36 hm5C_associated_SNPs_17924 0 0 1 0 0 exosome 1 0.500231646831887 1 0.999536706336226 hm5C_site_19303 DeepMRMD:1;iRNA_m5C:0.999536706336226 19304 chr17 79425688 79425688 1 + C T CESC 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACACGCAATGCCAAGGCCATCCTGGGGAAGGGCCGGA < 41bp 1 0.0214983199225288 1 0.0587131679058075 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425688 synonymous SNV . 0 13 hm5C_associated_SNPs_17926 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19304 DeepMRMD:1;iRNA_m5C:0.999536712157815 19305 chr6 7572161 7572161 1 + C G CESC 7572176 + 7572156 7572196 41 ACAAGCAAGAAACATGGATGCTGATGGAGCTGCAGAAGATT ACAAGGAAGAAACATGGATGCTGATGGAGCTGCAGAAGATT < 41bp 1 0.212490727448096 1 0.111230611801147 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572176 chr6:7572161 nonsynonymous SNV 0.999 1 6 hm5C_associated_SNPs_17927 0 0 1 0 1 Nucleus 1 0.500241500932618 1 0.999516998134764 hm5C_site_19305 DeepMRMD:1;iRNA_m5C:0.999516998134764 19306 chr19 10893714 10893714 1 + G C CESC 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGACGAAGTTCTTCCTCTCCCACCCGGCCTA < 41bp 1 0.162667422984035 1 0.101441025733948 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893714 nonsynonymous SNV 0.992 4 14 hm5C_associated_SNPs_17928 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19306 DeepMRMD:1;iRNA_m5C:0.999536712157815 19307 chr19 10893713 10893713 1 + A G CESC 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGGGGAAGTTCTTCCTCTCCCACCCGGCCTA < 41bp 1 0.251209109299259 1 0.395255118608475 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893713 nonsynonymous SNV 0.986 4 13 hm5C_associated_SNPs_17929 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19307 DeepMRMD:1;iRNA_m5C:0.999536712157815 19308 chr2 32613928 32613928 1 + G A CESC 32613943 + 32613923 32613963 41 GTGGCGTCCTCAGTGATGGACAGATTGTCTTACCTCTTACC GTGGCATCCTCAGTGATGGACAGATTGTCTTACCTCTTACC < 41bp 1 0.105331554406996 1 0.542723417282104 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32613943 chr2:32613928 synonymous SNV . 0 6 hm5C_associated_SNPs_17930 0 0 1 0 1 Nucleus 1 0.500231644146888 0.914553165435792 0.999536711706225 hm5C_site_19308 DeepMRMD:0.914553165435792;iRNA_m5C:0.999536711706225 19309 chr16 67578977 67578977 1 + T C CESC 67578992 + 67578972 67579012 41 CAGTATGGTGCCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC CAGTACGGTGCCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC < 41bp 1 0.0972813054472335 1 0.199976831674576 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578992 chr16:67578977 synonymous SNV . 0 6 hm5C_associated_SNPs_17931 0 0 1 0 1 unknown 1 0.500231643918884 1 0.999536712162232 hm5C_site_19309 DeepMRMD:1;iRNA_m5C:0.999536712162232 19310 chr17 80684800 80684800 1 + C G CESC 80684806 + 80684786 80684826 41 AGCAGAGGATTCCTCTGGGCCGGTGATTTTTGACCCAGCTT AGCAGAGGATTCCTGTGGGCCGGTGATTTTTGACCCAGCTT < 41bp 1 0.417676056090803 1 0.502630770206451 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80684806 chr17:80684800 nonsynonymous SNV 0.752 2 15 hm5C_associated_SNPs_17932 0 0 1 0 1 Ribosome 1 0.500231643921093 0.994738459587098 0.999536712157815 hm5C_site_19310 DeepMRMD:0.994738459587098;iRNA_m5C:0.999536712157815 19311 chr11 67052376 67052376 1 + C T CESC 67052374 + 67052354 67052394 41 ACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAG ACATGTCCAAGATGGGCAACCCTTTCCTGACCCAGTGGCAG < 41bp 1 0.0195197601440768 1 0.0546295046806335 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052374 chr11:67052376 synonymous SNV . 0 23 hm5C_associated_SNPs_17933 0 0 1 0 2 chromatin 1 0.500231152045689 1 0.999537695908622 hm5C_site_19311 DeepMRMD:1;iRNA_m5C:0.999537695908622 19312 chr22 29439407 29439407 1 + C T CESC 29439389 + 29439369 29439409 41 TCAACAAGCAGAAAGTGGCTCGAGCAAGGATCCAGCACCGC TCAACAAGCAGAAAGTGGCTCGAGCAAGGATCCAGCACTGC < 41bp 1 0.283121354215765 1 0.306246042251587 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29439389 chr22:29439407 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_17934 0 0 1 0 1 Ribosome 1 0.500231697502515 1 0.999536604994971 hm5C_site_19312 DeepMRMD:1;iRNA_m5C:0.999536604994971 19313 chr19 49652956 49652956 1 + C T CESC 49652948 + 49652928 49652968 41 GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG GAGCCCTGGGCTCTCCGGGGCTCCCTCTTCGCAAGCTGCAG < 41bp 1 0.080185522046833 1 0.164226233959198 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652948 chr19:49652956 synonymous SNV . 0 29 hm5C_associated_SNPs_17935 0 0 0 0 1 Cytosol 1 0.500231643879726 1 0.999536712240549 hm5C_site_19313 DeepMRMD:1;iRNA_m5C:0.999536712240549 19314 chr19 49652956 49652956 1 + C T CESC 49652950 + 49652930 49652970 41 GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC GCCCTGGGCTCTCCGGGGCTCCCTCTTCGCAAGCTGCAGCC < 41bp 1 0.0793099395203202 1 0.0404552817344666 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652950 chr19:49652956 synonymous SNV . 0 27 hm5C_associated_SNPs_17936 0 0 0 0 1 Cytosol 1 0.500231643920781 1 0.999536712158438 hm5C_site_19314 DeepMRMD:1;iRNA_m5C:0.999536712158438 19315 chr19 49652956 49652956 1 + C T CESC 49652951 + 49652931 49652971 41 CCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCA CCCTGGGCTCTCCGGGGCTCCCTCTTCGCAAGCTGCAGCCA < 41bp 1 0.0579903899916561 1 0.022081196308136 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652951 chr19:49652956 synonymous SNV . 0 26 hm5C_associated_SNPs_17937 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19315 DeepMRMD:1;iRNA_m5C:0.999536712157815 19316 chr19 49652956 49652956 1 + C T CESC 49652952 + 49652932 49652972 41 CCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG CCTGGGCTCTCCGGGGCTCCCTCTTCGCAAGCTGCAGCCAG < 41bp 1 0.300305273070376 1 0.0893331170082092 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652952 chr19:49652956 synonymous SNV . 0 25 hm5C_associated_SNPs_17938 0 0 0 0 1 Cytosol 1 0.500231644316305 1 0.999536711367391 hm5C_site_19316 DeepMRMD:1;iRNA_m5C:0.999536711367391 19317 chr5 176733449 176733449 1 + G T CESC 176733429 + 176733409 176733449 41 GCCGTTCGCGACAGGCGAGGCCCCTTCCAAAACACTTGTTG GCCGTTCGCGACAGGCGAGGCCCCTTCCAAAACACTTGTTT < 41bp 1 0.156622719023616 1 0.0505133867263794 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733429 chr5:176733449 stopgain 1.000 1 41 hm5C_associated_SNPs_17939 0 0 1 0 1 Cytosol 1 0.500231655612084 1 0.999536688775832 hm5C_site_19317 DeepMRMD:1;iRNA_m5C:0.999536688775832 19318 chr7 2416588 2416588 1 + G A CESC 2416581 + 2416561 2416601 41 TGGTGTGTCCCTGCCCTGGCCTAGGTGGACAACGCGTACTG TGGTGTGTCCCTGCCCTGGCCTAGGTGAACAACGCGTACTG < 41bp 1 0.544830563561651 1 0.47316038608551 experiment 0.910338872876698 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2416581 chr7:2416588 nonsynonymous SNV 0.922 4 28 hm5C_associated_SNPs_17940 0 0 1 0 1 Ribosome 1 0.500182527051735 1 0.999634945896531 hm5C_site_19318 DeepMRMD:1;iRNA_m5C:0.999634945896531 19319 chr1 43827910 43827910 1 + A C CESC 43827926 + 43827906 43827946 41 TCTCAGGCCATGGCTTTGCACAGAACCAGCTAGTTATTTGG TCTCCGGCCATGGCTTTGCACAGAACCAGCTAGTTATTTGG < 41bp 1 0.67299879371149 1 0.178612470626831 experiment 0.65400241257702 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC20 ENSG00000117399 CDS Human protein_coding chr1:43827926 chr1:43827910 synonymous SNV . 0 5 hm5C_associated_SNPs_17941 0 0 1 0 2 Ribosome 1 0.500231569756153 1 0.999536860487694 hm5C_site_19319 DeepMRMD:1;iRNA_m5C:0.999536860487694 19320 chr2 27459279 27459279 1 + G C CESC 27459284 + 27459264 27459304 41 CAATGCGTGGAGCTGGGGGCCGGCGTCTCTCTTCCTTTGTC CAATGCGTGGAGCTGCGGGCCGGCGTCTCTCTTCCTTTGTC < 41bp 1 0.465228307591719 1 0.679725885391235 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27459284 chr2:27459279 nonsynonymous SNV 0.995 2 16 hm5C_associated_SNPs_17942 0 0 1 0 0 Exosome 1 0.500231643920232 0.64054822921753 0.999536712159537 hm5C_site_19320 DeepMRMD:0.64054822921753;iRNA_m5C:0.999536712159537 19321 chr13 76395533 76395533 1 + C T CESC 76395515 + 76395495 76395535 41 CTTTTGCAAAAAGAGAGGACCGTGTAACAACTGAAATTCAG CTTTTGCAAAAAGAGAGGACCGTGTAACAACTGAAATTTAG < 41bp 1 0.12454054732548 1 0.0987472236156464 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76395515 chr13:76395533 stopgain 0.328 0 39 hm5C_associated_SNPs_17943 0 0 1 0 0 Cytosol 1 0.500231643850435 1 0.999536712299129 hm5C_site_19321 DeepMRMD:1;iRNA_m5C:0.999536712299129 19322 chr19 13248327 13248327 1 + G A CESC 13248325 + 13248305 13248345 41 AACAGCTGCGGCACCGGCATCCGCTCTTCTACCAACGATCC AACAGCTGCGGCACCGGCATCCACTCTTCTACCAACGATCC < 41bp 1 0.0864305062518871 1 0.0666761100292206 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NACC1 ENSG00000160877 CDS Human protein_coding chr19:13248325 chr19:13248327 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_17944 0 0 1 0 1 Ribosome 1 0.500231643921082 1 0.999536712157835 hm5C_site_19322 DeepMRMD:1;iRNA_m5C:0.999536712157835 19323 chr1 8030977 8030977 1 + G A CESC 8030961 + 8030941 8030981 41 TTCTTTTCACTAGTCTGCTGCTGTGAAGGAGATACTGAAGG TTCTTTTCACTAGTCTGCTGCTGTGAAGGAGATACTAAAGG < 41bp 1 0.174544198359585 1 0.167784661054611 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030961 chr1:8030977 synonymous SNV . 0 37 hm5C_associated_SNPs_17945 0 0 1 0 2 Ribosome 1 0.500231644127104 1 0.999536711745792 hm5C_site_19323 DeepMRMD:1;iRNA_m5C:0.999536711745792 19324 chr14 102805188 102805188 1 + G T CESC 102805183 + 102805163 102805203 41 CATTAGGAATCACAGAATTCCTACGGAAGAAAGAAATACAC CATTAGGAATCACAGAATTCCTACGTAAGAAAGAAATACAC < 41bp 1 0.435784978331259 1 0.453522086143494 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805183 chr14:102805188 synonymous SNV . 0 26 hm5C_associated_SNPs_17947 0 0 1 1 1 chromatin 1 0.500231643921043 1 0.999536712157914 hm5C_site_19324 DeepMRMD:1;iRNA_m5C:0.999536712157914 19325 chr1 145304608 145304608 1 + C G CESC 145304596 + 145304576 145304616 41 GGAAGACAAAGTCGACTCAACTCTCATTGGCTCATCCTCTC GGAAGACAAAGTCGACTCAACTCTCATTGGCTGATCCTCTC < 41bp 1 0.0736977236500563 1 0.0574186742305756 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBPF10 ENSG00000163386 CDS Human other chr1:145304596 chr1:145304608 stopgain 0.001 0 33 hm5C_associated_SNPs_17948 0 0 0 0 0 chromatin 1 0.50023164391824 1 0.999536712163519 hm5C_site_19325 DeepMRMD:1;iRNA_m5C:0.999536712163519 19326 chr13 76430740 76430740 1 + C T CESC 76430734 + 76430714 76430754 41 TACTGCAACGACTGCTATCTCAGATTCAAATGTAAGAGAGC TACTGCAACGACTGCTATCTCAGATTTAAATGTAAGAGAGC < 41bp 1 0.374929475601992 1 0.674560844898224 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76430734 chr13:76430740 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_17949 0 0 1 0 1 Cytosol 1 0.500231643854002 0.650878310203552 0.999536712291995 hm5C_site_19326 DeepMRMD:0.650878310203552;iRNA_m5C:0.999536712291995 19327 chr7 151818021 151818021 1 + G A CESC 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACAGG < 41bp 1 0.40392153011075 1 0.0926429629325867 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151818021 nonsynonymous SNV 0.998 0 39 hm5C_associated_SNPs_17950 0 0 1 0 1 chromatin 1 0.500231643920277 1 0.999536712159445 hm5C_site_19327 DeepMRMD:1;iRNA_m5C:0.999536712159445 19328 chr19 33202723 33202723 1 + G A CESC 33202731 + 33202711 33202751 41 GAAAAAAAGACTGAGGAAATCATGAAGGAAGGCAAGCAGTT GAAAAAAAGACTAAGGAAATCATGAAGGAAGGCAAGCAGTT < 41bp 1 0.51693569022322 1 0.271004915237427 experiment 0.966128619553559 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NUDT19 ENSG00000213965 CDS Human protein_coding chr19:33202731 chr19:33202723 nonsynonymous SNV 0.992 3 13 hm5C_associated_SNPs_17951 0 0 1 0 1 Ribosome 1 0.500231643921134 1 0.999536712157733 hm5C_site_19328 DeepMRMD:1;iRNA_m5C:0.999536712157733 19329 chr11 67069681 67069681 1 + G C CESC 67069687 + 67069667 67069707 41 GTCCACCCAGCTTTGAAGAGCAGCTGCGCCTGGCCCTGGAG GTCCACCCAGCTTTCAAGAGCAGCTGCGCCTGGCCCTGGAG < 41bp 1 0.492949964789194 1 0.354198336601257 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANKRD13D ENSG00000172932 CDS Human protein_coding chr11:67069687 chr11:67069681 nonsynonymous SNV 0.996 2 15 hm5C_associated_SNPs_17952 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19329 DeepMRMD:1;iRNA_m5C:0.999536712157815 19330 chr5 176721900 176721900 1 + G T CESC 176721903 + 176721883 176721923 41 AGAAAGGCTGTGTGTCAGATCCTCTTCAGACATCTGGGAAA AGAAAGGCTGTGTGTCATATCCTCTTCAGACATCTGGGAAA < 41bp 1 0.0760805434175162 1 0.103426784276962 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176721903 chr5:176721900 nonsynonymous SNV 0.011 2 18 hm5C_associated_SNPs_17954 0 0 1 0 0 Nucleus 1 0.500231644021154 1 0.999536711957692 hm5C_site_19330 DeepMRMD:1;iRNA_m5C:0.999536711957692 19331 chr1 156096702 156096702 1 + C G CESC 156096700 + 156096680 156096720 41 GACACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGG GACACGGGCGAAGCCAGGGTCTGCCCTGTGAGCACTAGAGG < 41bp 1 0.251731053712879 1 0.138036549091339 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096700 chr1:156096702 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_17955 0 0 0 0 1 Cytosol 1 0.500231643731706 1 0.999536712536589 hm5C_site_19331 DeepMRMD:1;iRNA_m5C:0.999536712536589 19332 chr1 156096702 156096702 1 + C G CESC 156096703 + 156096683 156096723 41 ACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT ACGGGCGAAGCCAGGGTCTGCCCTGTGAGCACTAGAGGATT < 41bp 1 0.10662566000491 1 0.0770980715751648 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096703 chr1:156096702 nonsynonymous SNV 0.997 0 20 hm5C_associated_SNPs_17956 0 0 0 0 1 Cytosol 1 0.500231643920954 1 0.999536712158093 hm5C_site_19332 DeepMRMD:1;iRNA_m5C:0.999536712158093 19333 chr1 156096702 156096702 1 + C G CESC 156096704 + 156096684 156096724 41 CGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT CGGGCGAAGCCAGGGTCTGCCCTGTGAGCACTAGAGGATTT < 41bp 1 0.154500755294149 1 0.11032509803772 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096704 chr1:156096702 nonsynonymous SNV 0.997 0 19 hm5C_associated_SNPs_17957 0 0 0 0 1 Cytosol 1 0.500231643923342 1 0.999536712153315 hm5C_site_19333 DeepMRMD:1;iRNA_m5C:0.999536712153315 19334 chr1 156096702 156096702 1 + C G CESC 156096705 + 156096685 156096725 41 GGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC GGGCGAAGCCAGGGTCTGCCCTGTGAGCACTAGAGGATTTC < 41bp 1 0.387013724891991 1 0.132117003202438 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096705 chr1:156096702 nonsynonymous SNV 0.997 0 18 hm5C_associated_SNPs_17958 0 0 0 0 1 Cytosol 1 0.500231643921068 1 0.999536712157865 hm5C_site_19334 DeepMRMD:1;iRNA_m5C:0.999536712157865 19335 chr2 236817440 236817440 1 + T A CESC 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGACCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT < 41bp 1 0.115909746949317 1 0.0604491531848907 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817440 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_17959 0 0 1 0 1 Nucleus 1 0.500231642767052 1 0.999536714465896 hm5C_site_19335 DeepMRMD:1;iRNA_m5C:0.999536714465896 19336 chr2 74425844 74425844 1 + C T CESC 74425852 + 74425832 74425872 41 TCCCTTCGCCTTCGCCCTTTCCACCTCGCGGCAGTTCGGTA TCCCTTCGCCTTTGCCCTTTCCACCTCGCGGCAGTTCGGTA < 41bp 1 0.242536104553837 1 0.253882199525833 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74425852 chr2:74425844 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_17960 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19336 DeepMRMD:1;iRNA_m5C:0.999536712157815 19337 chr12 57970115 57970115 1 + C T CESC 57970126 + 57970106 57970146 41 GCCCGGCTCCGGGACGAGATCAACGAGAAGCAGAAGACCAT GCCCGGCTCTGGGACGAGATCAACGAGAAGCAGAAGACCAT < 41bp 1 0.638578428924986 1 0.518194794654846 experiment 0.722843142150027 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970126 chr12:57970115 nonsynonymous SNV 0.997 5 10 hm5C_associated_SNPs_17961 0 0 1 0 1 Cytosol 1 0.500231643871389 0.963610410690308 0.999536712257223 hm5C_site_19337 DeepMRMD:0.963610410690308;iRNA_m5C:0.999536712257223 19338 chr19 50338793 50338793 1 + G T CESC 50338810 + 50338790 50338830 41 GATGGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTC GATTGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTC < 41bp 1 0.691571785885578 1 0.390718698501587 experiment 0.616856428228845 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338810 chr19:50338793 nonsynonymous SNV 0.993 2 4 hm5C_associated_SNPs_17962 0 0 1 0 2 chromatin 1 0.500231644100816 1 0.999536711798368 hm5C_site_19338 DeepMRMD:1;iRNA_m5C:0.999536711798368 19339 chr19 50338793 50338793 1 + G T CESC 50338812 + 50338792 50338832 41 TGGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTCTG TTGGGGGACAGCAGGCACCCCCAGGGCTGGGGCCCATTCTG < 41bp 1 0.488185600834298 1 0.812122583389282 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338812 chr19:50338793 nonsynonymous SNV 0.993 2 2 hm5C_associated_SNPs_17963 0 0 1 0 2 chromatin 1 0.500231643920655 0.375754833221436 0.99953671215869 hm5C_site_19339 DeepMRMD:0.375754833221436;iRNA_m5C:0.99953671215869 19340 chr19 42729913 42729913 1 + C T CESC 42729916 + 42729896 42729936 41 CTCCAAGTCCTTTGCCTCAGCTTCCCGGCTGTCCCGGCACC CTCCAAGTCCTTTGCCTTAGCTTCCCGGCTGTCCCGGCACC < 41bp 1 0.222806937575039 1 0.109070897102356 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF526 ENSG00000167625 CDS Human protein_coding chr19:42729916 chr19:42729913 nonsynonymous SNV 0.069 0 18 hm5C_associated_SNPs_17965 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19340 DeepMRMD:1;iRNA_m5C:0.999536712157815 19341 chr5 154330464 154330464 1 + C T CESC 154330472 + 154330452 154330492 41 AAATTGTTTATCCTCCACAACTGCCTGGAGAACCTCGGAGA AAATTGTTTATCTTCCACAACTGCCTGGAGAACCTCGGAGA < 41bp 1 0.457394241984922 1 0.0388093292713165 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154330472 chr5:154330464 nonsynonymous SNV 0.792 4 13 hm5C_associated_SNPs_17966 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19341 DeepMRMD:1;iRNA_m5C:0.999536712157815 19342 chr4 53579422 53579422 1 + T C CESC 53579420 + 53579400 53579440 41 CAAAGCACCCTTTCCTGTGCCCTTTTAAGGTTGACCCAGTG CAAAGCACCCTTTCCTGTGCCCCTTTAAGGTTGACCCAGTG < 41bp 1 0.0313316699620726 1 0.0687021315097809 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579420 chr4:53579422 . . 0 23 hm5C_associated_SNPs_17967 0 0 1 0 0 unknown 1 0.500231643298109 1 0.999536713403783 hm5C_site_19342 DeepMRMD:1;iRNA_m5C:0.999536713403783 19343 chr4 53579422 53579422 1 + T C CESC 53579434 + 53579414 53579454 41 CTGTGCCCTTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAA CTGTGCCCCTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAA < 41bp 1 0.0995619769422748 1 0.135034918785095 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579434 chr4:53579422 . . 0 9 hm5C_associated_SNPs_17968 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19343 DeepMRMD:1;iRNA_m5C:0.999536712157815 19344 chr4 53579422 53579422 1 + T C CESC 53579435 + 53579415 53579455 41 TGTGCCCTTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAAC TGTGCCCCTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAAC < 41bp 1 0.115135460676861 1 0.237042337656021 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579435 chr4:53579422 . . 0 8 hm5C_associated_SNPs_17969 0 0 1 0 0 unknown 1 0.500231644683054 1 0.999536710633892 hm5C_site_19344 DeepMRMD:1;iRNA_m5C:0.999536710633892 19345 chr4 53579422 53579422 1 + T C CESC 53579436 + 53579416 53579456 41 GTGCCCTTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAACA GTGCCCCTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAACA < 41bp 1 0.299576789416521 1 0.690799176692963 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579436 chr4:53579422 . . 0 7 hm5C_associated_SNPs_17970 0 0 1 0 0 unknown 1 0.500231643921092 0.618401646614074 0.999536712157815 hm5C_site_19345 DeepMRMD:0.618401646614074;iRNA_m5C:0.999536712157815 19346 chr4 53579422 53579422 1 + T C CESC 53579441 + 53579421 53579461 41 CTTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAACACAGAA CCTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAACACAGAA < 41bp 1 0.249045814611827 1 0.134216547012329 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579441 chr4:53579422 . . 0 2 hm5C_associated_SNPs_17971 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19346 DeepMRMD:1;iRNA_m5C:0.999536712157815 19347 chrX 64956699 64956699 1 + G A CESC 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAAAAGGAG < 41bp 1 0.506666554817773 1 0.635730504989624 experiment 0.986666890364454 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956699 synonymous SNV . 0 35 hm5C_associated_SNPs_17972 0 0 1 0 2 Ribosome 1 0.500231668489201 0.728538990020752 0.999536663021598 hm5C_site_19347 DeepMRMD:0.728538990020752;iRNA_m5C:0.999536663021598 19348 chrX 64956699 64956699 1 + G A CESC 64956695 + 64956675 64956715 41 GAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAGAAGA GAAGAAGAAGCGTGAAATGGCAGAAAAGGAGAAAGAGAAGA < 41bp 1 0.655810121346666 1 0.372578322887421 experiment 0.688379757306667 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956695 chrX:64956699 synonymous SNV . 0 25 hm5C_associated_SNPs_17973 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19348 DeepMRMD:1;iRNA_m5C:0.999536712157815 19349 chr19 50155928 50155928 1 + C G CESC 50155914 + 50155894 50155934 41 GATCGGCGCCGCTCGGGGGCCGCCTCCTCCTCCTCCTCTTC GATCGGCGCCGCTCGGGGGCCGCCTCCTCCTCCTGCTCTTC < 41bp 1 0.279423274342663 1 0.0574779510498047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50155914 chr19:50155928 nonsynonymous SNV 0.115 3 35 hm5C_associated_SNPs_17974 0 0 1 0 0 Cytosol 1 0.500231643630473 1 0.999536712739054 hm5C_site_19349 DeepMRMD:1;iRNA_m5C:0.999536712739054 19350 chr11 9459820 9459820 1 + G A CESC 9459830 + 9459810 9459850 41 AGCTGAAGATGATGATGAAACCGGTAAGGGATTTTCAATGG AGCTGAAGATAATGATGAAACCGGTAAGGGATTTTCAATGG < 41bp 1 0.527954115717276 1 0.169523477554321 experiment 0.944091768565449 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9459830 chr11:9459820 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_17975 0 0 1 0 1 Cytosol 1 0.500231655535343 1 0.999536688929315 hm5C_site_19350 DeepMRMD:1;iRNA_m5C:0.999536688929315 19351 chr11 9459820 9459820 1 + G A CESC 9459831 + 9459811 9459851 41 GCTGAAGATGATGATGAAACCGGTAAGGGATTTTCAATGGA GCTGAAGATAATGATGAAACCGGTAAGGGATTTTCAATGGA < 41bp 1 0.681731894193199 1 0.386144578456879 experiment 0.636536211613601 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9459831 chr11:9459820 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_17976 0 0 1 0 1 Cytosol 1 0.500231643921096 1 0.999536712157809 hm5C_site_19351 DeepMRMD:1;iRNA_m5C:0.999536712157809 19352 chr5 149755822 149755822 1 + G A CESC 149755829 + 149755809 149755849 41 CCAGAGACCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAG CCAGAGACCAGCAAAGGATTCTTCAAGCAGTGAGGAATCAG < 41bp 1 0.307290933964142 1 0.183275938034058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755829 chr5:149755822 nonsynonymous SNV 0.021 1 14 hm5C_associated_SNPs_17977 0 0 1 0 1 Nucleus 1 0.50023164392084 1 0.999536712158319 hm5C_site_19352 DeepMRMD:1;iRNA_m5C:0.999536712158319 19353 chr5 149755822 149755822 1 + G A CESC 149755836 + 149755816 149755856 41 CCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAGATAGTGA CCAGCAAAGGATTCTTCAAGCAGTGAGGAATCAGATAGTGA < 41bp 1 0.29355327080066 1 0.348909080028534 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755836 chr5:149755822 nonsynonymous SNV 0.021 1 7 hm5C_associated_SNPs_17978 0 0 1 0 1 Nucleus 1 0.500231463620625 1 0.99953707275875 hm5C_site_19353 DeepMRMD:1;iRNA_m5C:0.99953707275875 19354 chrX 129149410 129149410 1 + C T CESC 129149429 + 129149409 129149449 41 GCAACCACGGCCTGGGGGCTCCTTCGTTCCAGAGCAGGACC GTAACCACGGCCTGGGGGCTCCTTCGTTCCAGAGCAGGACC < 41bp 1 0.0251903269891648 1 0.12527459859848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129149429 chrX:129149410 stopgain 1.000 0 2 hm5C_associated_SNPs_17979 0 0 1 0 0 Cytosol 1 0.500231633692007 1 0.999536732615987 hm5C_site_19354 DeepMRMD:1;iRNA_m5C:0.999536732615987 19355 chr19 42729186 42729186 1 + G C CESC 42729206 + 42729186 42729226 41 GAGTTCTTGGAGCATCAGGGCACCCACTTTGACTCCCTAGA CAGTTCTTGGAGCATCAGGGCACCCACTTTGACTCCCTAGA < 41bp 1 0.0993684287158839 1 0.0767724812030792 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF526 ENSG00000167625 CDS Human protein_coding chr19:42729206 chr19:42729186 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_17980 0 0 1 0 0 Cytosol 1 0.500231643921131 1 0.999536712157738 hm5C_site_19355 DeepMRMD:1;iRNA_m5C:0.999536712157738 19356 chr1 43893266 43893266 1 + C T CESC 43893251 + 43893231 43893271 41 CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGCGTCAG CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGTGTCAG < 41bp 1 0.257343007727663 1 0.864455342292786 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43893251 chr1:43893266 nonsynonymous SNV 0.962 2 36 hm5C_associated_SNPs_17981 0 0 1 0 1 Cytosol 1 0.500231643920772 0.271089315414428 0.999536712158457 hm5C_site_19356 DeepMRMD:0.271089315414428;iRNA_m5C:0.999536712158457 19357 chr2 216197200 216197200 1 + G A CESC 216197204 + 216197184 216197224 41 TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCC TTTAGGTATTCCAGCCACTGCCTCTTTCAAACATGTCAGCC < 41bp 1 0.0589710248876543 1 0.18862783908844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197204 chr2:216197200 nonsynonymous SNV 0.740 4 17 hm5C_associated_SNPs_17982 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19357 DeepMRMD:1;iRNA_m5C:0.999536712157815 19358 chr2 216197200 216197200 1 + G A CESC 216197205 + 216197185 216197225 41 TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCCC TTAGGTATTCCAGCCACTGCCTCTTTCAAACATGTCAGCCC < 41bp 1 0.354662694719638 1 0.347110629081726 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197205 chr2:216197200 nonsynonymous SNV 0.740 4 16 hm5C_associated_SNPs_17983 0 0 1 0 2 chromatin 1 0.500220501441807 1 0.999558997116385 hm5C_site_19358 DeepMRMD:1;iRNA_m5C:0.999558997116385 19359 chr8 124787458 124787458 1 + C A CESC 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGAT < 41bp 1 0.429162480477853 1 0.171693652868271 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787458 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_17984 0 0 0 0 2 Ribosome 1 0.500231643923257 1 0.999536712153485 hm5C_site_19359 DeepMRMD:1;iRNA_m5C:0.999536712153485 19360 chr12 110456186 110456186 1 + G A CESC 110456173 + 110456153 110456193 41 CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATC CCTTGGTTTCTAGAATATGCCCAAATGATGTCTATCGCATC < 41bp 1 0.38174768844194 1 0.610100746154785 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456173 chr12:110456186 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_17985 0 0 1 0 1 chromatin 1 0.500231642365678 0.77979850769043 0.999536715268645 hm5C_site_19360 DeepMRMD:0.77979850769043;iRNA_m5C:0.999536715268645 19361 chr12 110456186 110456186 1 + G A CESC 110456174 + 110456154 110456194 41 CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATCT CTTGGTTTCTAGAATATGCCCAAATGATGTCTATCGCATCT < 41bp 1 0.335036996029967 1 0.149074465036392 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456174 chr12:110456186 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_17986 0 0 1 0 1 chromatin 1 0.500231643668565 1 0.999536712662871 hm5C_site_19361 DeepMRMD:1;iRNA_m5C:0.999536712662871 19362 chr16 57787136 57787136 1 + C T CESC 57787133 + 57787113 57787153 41 CCAACCCCAGCGCCCCCCTCCGGCGCATCTATGAGCGGCCC CCAACCCCAGCGCCCCCCTCCGGTGCATCTATGAGCGGCCC < 41bp 1 0.424124201983574 1 0.847978293895721 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57787133 chr16:57787136 nonsynonymous SNV 0.109 4 24 hm5C_associated_SNPs_17987 0 0 0 0 1 Cytosol 1 0.500231643921092 0.304043412208558 0.999536712157815 hm5C_site_19362 DeepMRMD:0.304043412208558;iRNA_m5C:0.999536712157815 19363 chr12 57604635 57604635 1 + G A CESC 57604652 + 57604632 57604672 41 CCCGGCTTCCTGGGCGACCGCTGCCAGTACCGTGAGTGAGC CCCAGCTTCCTGGGCGACCGCTGCCAGTACCGTGAGTGAGC < 41bp 1 0.159065700549351 1 0.287433683872223 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604652 chr12:57604635 nonsynonymous SNV 0.994 0 4 hm5C_associated_SNPs_17988 0 0 1 0 1 Exosome 1 0.500231643917131 1 0.999536712165739 hm5C_site_19363 DeepMRMD:1;iRNA_m5C:0.999536712165739 19364 chr2 95950804 95950804 1 + C A CESC 95950821 + 95950801 95950841 41 GACCTGGAGGCCCTGCAGAGCAGTGGGCTTCAGCGCATCCA GACATGGAGGCCCTGCAGAGCAGTGGGCTTCAGCGCATCCA < 41bp 1 0.560652774661136 1 0.424722671508789 experiment 0.878694450677728 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PROM2 ENSG00000155066 CDS Human protein_coding chr2:95950821 chr2:95950804 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_17989 0 0 0 0 2 Ribosome 1 0.500231645210166 1 0.999536709579668 hm5C_site_19364 DeepMRMD:1;iRNA_m5C:0.999536709579668 19365 chr16 85839345 85839345 1 + G A CESC 85839335 + 85839315 85839355 41 AATGGCTGTCCTCTCTGCCCCCAGTGTATCGCATTAAGTTC AATGGCTGTCCTCTCTGCCCCCAGTGTATCACATTAAGTTC < 41bp 1 0.458853625438369 1 0.411425173282623 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85839335 chr16:85839345 nonsynonymous SNV 0.645 1 31 hm5C_associated_SNPs_17990 0 0 1 0 1 Ribosome 1 0.500232180233329 1 0.999535639533341 hm5C_site_19365 DeepMRMD:1;iRNA_m5C:0.999535639533341 19366 chr16 85839345 85839345 1 + G A CESC 85839336 + 85839316 85839356 41 ATGGCTGTCCTCTCTGCCCCCAGTGTATCGCATTAAGTTCA ATGGCTGTCCTCTCTGCCCCCAGTGTATCACATTAAGTTCA < 41bp 1 0.479599193348123 1 0.782682061195374 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85839336 chr16:85839345 nonsynonymous SNV 0.645 1 30 hm5C_associated_SNPs_17991 0 0 1 0 1 Ribosome 1 0.500231643921298 0.434635877609252 0.999536712157404 hm5C_site_19366 DeepMRMD:0.434635877609252;iRNA_m5C:0.999536712157404 19367 chr14 64676723 64676723 1 + C T CESC 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTACCGGTGGCTGGCCCGGGAGAACCGCACAGACACG < 41bp 1 0.567269152838163 1 0.972267210483551 experiment 0.865461694323674 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676723 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_17992 0 0 0 0 2 Nucleus 1 0.500231644686301 0.0554655790328979 0.999536710627397 hm5C_site_19367 DeepMRMD:0.0554655790328979;iRNA_m5C:0.999536710627397 19368 chrX 73043745 73043745 1 + C T CESC 73043732 - 73043712 73043752 41 GGGGCTCGGAACTACATGCCCTAGGATATAAAAATGATGTT GGGGCTCAGAACTACATGCCCTAGGATATAAAAATGATGTT < 41bp 1 0.307345318881287 1 0.382901281118393 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043732 chrX:73043745 . . 0 8 hm5C_associated_SNPs_17993 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19368 DeepMRMD:1;iRNA_m5C:0.999536712157815 19369 chrX 73043745 73043745 1 + C T CESC 73043738 - 73043718 73043758 41 TTCTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAAT TTCTGTGGGGCTCAGAACTACATGCCCTAGGATATAAAAAT < 41bp 1 0.0430707912083503 1 0.159604221582413 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043738 chrX:73043745 . . 0 14 hm5C_associated_SNPs_17994 0 0 1 2 0 unknown 1 0.500231643936526 1 0.999536712126948 hm5C_site_19369 DeepMRMD:1;iRNA_m5C:0.999536712126948 19370 chrX 73043745 73043745 1 + C T CESC 73043746 - 73043726 73043766 41 TGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGGAT TGATTACTTTCTGTGGGGCTCAGAACTACATGCCCTAGGAT < 41bp 1 0.258361971615372 1 0.708385229110718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043746 chrX:73043745 . . 0 22 hm5C_associated_SNPs_17995 0 0 1 2 0 unknown 1 0.500231643921082 0.583229541778564 0.999536712157835 hm5C_site_19370 DeepMRMD:0.583229541778564;iRNA_m5C:0.999536712157835 19371 chrX 73043745 73043745 1 + C T CESC 73043748 - 73043728 73043768 41 GGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGG GGTGATTACTTTCTGTGGGGCTCAGAACTACATGCCCTAGG < 41bp 1 0.125916924071082 1 0.10692685842514 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043748 chrX:73043745 . . 0 24 hm5C_associated_SNPs_17996 0 0 1 2 0 unknown 1 0.500231643921173 1 0.999536712157654 hm5C_site_19371 DeepMRMD:1;iRNA_m5C:0.999536712157654 19372 chr19 4954449 4954449 1 + G A CESC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGAGCTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.242879405246744 1 0.402223080396652 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954449 . 0.008 0 14 hm5C_associated_SNPs_17997 0 0 0 0 2 chromatin 1 0.500231636485839 1 0.999536727028322 hm5C_site_19372 DeepMRMD:1;iRNA_m5C:0.999536727028322 19373 chr19 4954449 4954449 1 + G A CESC 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGAGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.546371090563608 1 0.301772356033325 experiment 0.907257818872784 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954449 . 0.008 0 10 hm5C_associated_SNPs_17998 0 0 0 0 2 chromatin 1 0.500231602246514 1 0.999536795506973 hm5C_site_19373 DeepMRMD:1;iRNA_m5C:0.999536795506973 19374 chr19 14024306 14024306 1 + G A CESC 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCAGCGT < 41bp 1 0.240844566072751 1 0.160209178924561 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024306 synonymous SNV . 0 37 hm5C_associated_SNPs_17999 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_19374 DeepMRMD:1;iRNA_m5C:0.999536712157816 19375 chr11 70253459 70253459 1 + C T CESC 70253474 + 70253454 70253494 41 GGGGGCCGATGACTGGGAGACCGACCCTGATTTTGTGGTAG GGGGGTCGATGACTGGGAGACCGACCCTGATTTTGTGGTAG < 41bp 1 0.152758183534367 1 0.222904741764069 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70253474 chr11:70253459 nonsynonymous SNV 0.102 1 6 hm5C_associated_SNPs_18000 0 0 1 0 2 Ribosome 1 0.500231598886424 1 0.999536802227151 hm5C_site_19375 DeepMRMD:1;iRNA_m5C:0.999536802227151 19376 chrX 73046888 73046888 1 + C T CESC 73046871 - 73046851 73046891 41 GAGGACTAAGATGGAAAGCCCATGTTCCAAGATAGATAGAA GAGAACTAAGATGGAAAGCCCATGTTCCAAGATAGATAGAA < 41bp 1 0.0968457527866874 1 0.107791572809219 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046871 chrX:73046888 . . 0 4 hm5C_associated_SNPs_18001 0 0 1 0 0 unknown 1 0.50023164403197 1 0.99953671193606 hm5C_site_19376 DeepMRMD:1;iRNA_m5C:0.99953671193606 19377 chrX 73046888 73046888 1 + C T CESC 73046873 - 73046853 73046893 41 CCGAGGACTAAGATGGAAAGCCCATGTTCCAAGATAGATAG CCGAGAACTAAGATGGAAAGCCCATGTTCCAAGATAGATAG < 41bp 1 0.151311326102016 1 0.0525023341178894 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046873 chrX:73046888 . . 0 6 hm5C_associated_SNPs_18002 0 0 1 0 0 unknown 1 0.500231643643627 1 0.999536712712745 hm5C_site_19377 DeepMRMD:1;iRNA_m5C:0.999536712712745 19378 chrX 73046888 73046888 1 + C T CESC 73046893 - 73046873 73046913 41 GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC GATGGTTTGAGACTTGAGACCCGAGAACTAAGATGGAAAGC < 41bp 1 0.162712839356461 1 0.315807908773422 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046893 chrX:73046888 . . 0 26 hm5C_associated_SNPs_18003 0 0 1 0 0 unknown 1 0.500231642188361 1 0.999536715623278 hm5C_site_19378 DeepMRMD:1;iRNA_m5C:0.999536715623278 19379 chrX 73046888 73046888 1 + C T CESC 73046894 - 73046874 73046914 41 AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG AGATGGTTTGAGACTTGAGACCCGAGAACTAAGATGGAAAG < 41bp 1 0.444008960293405 1 0.0873652100563049 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046894 chrX:73046888 . . 0 27 hm5C_associated_SNPs_18004 0 0 1 0 0 unknown 1 0.500231643920964 1 0.999536712158071 hm5C_site_19379 DeepMRMD:1;iRNA_m5C:0.999536712158071 19380 chrX 103434381 103434381 1 + G A CESC 103434382 + 103434362 103434402 41 GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAGGTG GGAAGGAGAGGCTCAGTGGACTCTTCCTTAACGAAGAGGTG < 41bp 1 0.297029303916124 1 0.0946494936943054 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103434382 chrX:103434381 synonymous SNV . 0 20 hm5C_associated_SNPs_18005 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19380 DeepMRMD:1;iRNA_m5C:0.999536712157815 19381 chr14 105927198 105927198 1 + G A CESC 105927186 + 105927166 105927206 41 TGCCGCAGGGCGGGCCCGTGCTCTGCAGGGACGAGATGGAG TGCCGCAGGGCGGGCCCGTGCTCTGCAGGGACAAGATGGAG < 41bp 1 0.461235431947589 1 0.271026611328125 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105927186 chr14:105927198 nonsynonymous SNV 0.991 4 33 hm5C_associated_SNPs_18006 0 0 1 0 1 Cytosol 1 0.500218443233322 1 0.999563113533357 hm5C_site_19381 DeepMRMD:1;iRNA_m5C:0.999563113533357 19382 chr8 146033203 146033203 1 + G T CESC 146033186 + 146033166 146033206 41 TTCGCGTGCACAGAGTGCGGCAAGGCGTTCTGCCGCAGGTT TTCGCGTGCACAGAGTGCGGCAAGGCGTTCTGCCGCATGTT < 41bp 1 0.358290797944771 1 0.260543882846832 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146033186 chr8:146033203 nonsynonymous SNV 0.874 1 38 hm5C_associated_SNPs_18008 0 0 0 0 0 chromatin 1 0.500231644937532 1 0.999536710124937 hm5C_site_19382 DeepMRMD:1;iRNA_m5C:0.999536710124937 19383 chr3 184042681 184042681 1 + C T CESC 184042675 + 184042655 184042695 41 GTGAATGGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAG GTGAATGGCAGGCAGAGGAACGAGGATGCCTGAAGGAAGAG < 41bp 1 0.660753613191552 1 0.474718689918518 experiment 0.678492773616896 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042675 chr3:184042681 nonsynonymous SNV 0.978 4 27 hm5C_associated_SNPs_18009 0 0 1 0 1 Nucleus 1 0.500231643921404 1 0.999536712157192 hm5C_site_19383 DeepMRMD:1;iRNA_m5C:0.999536712157192 19384 chrX 70354262 70354262 1 + C T CESC 70354269 + 70354249 70354289 41 ACCACGGAGTGGGCCATGCTCCTCCTGGAGATCATCATCAG ACCACGGAGTGGGTCATGCTCCTCCTGGAGATCATCATCAG < 41bp 1 0.137934118463622 1 0.311103254556656 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70354269 chrX:70354262 nonsynonymous SNV 0.954 3 14 hm5C_associated_SNPs_18011 0 0 0 0 2 Cytosol 1 0.500267232198882 1 0.999465535602236 hm5C_site_19384 DeepMRMD:1;iRNA_m5C:0.999465535602236 19385 chr22 18979457 18979457 1 + C T CESC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGTGAACCAAGCCTGTCTGTGTGTTCTGGAAC < 41bp 1 0.104445117669587 1 0.0521607100963593 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979457 . . 0 12 hm5C_associated_SNPs_18012 0 0 0 0 1 unknown 1 0.500231054968216 1 0.999537890063569 hm5C_site_19385 DeepMRMD:1;iRNA_m5C:0.999537890063569 19386 chr4 77661622 77661622 1 + G A CESC 77661608 + 77661588 77661628 41 CAGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGG CAGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGCACCTCGG < 41bp 1 0.24222558347654 1 0.547165870666504 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661608 chr4:77661622 nonsynonymous SNV 0.002 0 35 hm5C_associated_SNPs_18013 0 0 1 0 0 Ribosome 1 0.500231643921092 0.905668258666992 0.999536712157815 hm5C_site_19386 DeepMRMD:0.905668258666992;iRNA_m5C:0.999536712157815 19387 chr4 77661622 77661622 1 + G A CESC 77661609 + 77661589 77661629 41 AGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGC AGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGCACCTCGGC < 41bp 1 0.482409447020666 1 0.575695395469666 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661609 chr4:77661622 nonsynonymous SNV 0.002 0 34 hm5C_associated_SNPs_18014 0 0 1 0 0 Ribosome 1 0.500231643921092 0.848609209060668 0.999536712157815 hm5C_site_19387 DeepMRMD:0.848609209060668;iRNA_m5C:0.999536712157815 19388 chr4 77661622 77661622 1 + G A CESC 77661612 + 77661592 77661632 41 CTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGCTCT CTGGGCCGGAGGGGGCCCGGCCCAGGCAGCACCTCGGCTCT < 41bp 1 0.32843385159513 1 0.311260879039764 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661612 chr4:77661622 nonsynonymous SNV 0.002 0 31 hm5C_associated_SNPs_18015 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19388 DeepMRMD:1;iRNA_m5C:0.999536712157815 19389 chr4 77661622 77661622 1 + G A CESC 77661613 + 77661593 77661633 41 TGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGCTCTT TGGGCCGGAGGGGGCCCGGCCCAGGCAGCACCTCGGCTCTT < 41bp 1 0.407041908061756 1 0.333534240722656 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661613 chr4:77661622 nonsynonymous SNV 0.002 0 30 hm5C_associated_SNPs_18016 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19389 DeepMRMD:1;iRNA_m5C:0.999536712157815 19390 chr4 77661622 77661622 1 + G A CESC 77661614 + 77661594 77661634 41 GGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGCTCTTC GGGCCGGAGGGGGCCCGGCCCAGGCAGCACCTCGGCTCTTC < 41bp 1 0.68269815533052 1 0.497785121202469 experiment 0.634603689338961 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661614 chr4:77661622 nonsynonymous SNV 0.002 0 29 hm5C_associated_SNPs_18017 0 0 1 0 0 Ribosome 1 0.500231643921062 1 0.999536712157876 hm5C_site_19390 DeepMRMD:1;iRNA_m5C:0.999536712157876 19391 chr19 17313014 17313014 1 + C T CESC 17313031 + 17313011 17313051 41 GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT GAGTGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT < 41bp 1 0.150402262951755 1 0.0667835175991058 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17313031 chr19:17313014 nonsynonymous SNV 0.001 3 4 hm5C_associated_SNPs_18018 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19391 DeepMRMD:1;iRNA_m5C:0.999536712157815 19392 chr7 77539627 77539627 1 + A G CESC 77539642 + 77539622 77539662 41 AGATAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAA AGATAGCACACAAGAGGGAGCAGTTCAGAACCACGGTACAA < 41bp 1 0.252283937772403 1 0.171985298395157 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHTF2 ENSG00000006576 CDS Human protein_coding chr7:77539642 chr7:77539627 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_18019 0 0 1 0 1 Ribosome 1 0.500216118417636 1 0.999567763164728 hm5C_site_19392 DeepMRMD:1;iRNA_m5C:0.999567763164728 19393 chr16 1398426 1398426 1 + G A CESC 1398411 + 1398391 1398431 41 CTGAGGAGGCTGGAAGGCCGCACCAGCAAGGAGGCGCAGGA CTGAGGAGGCTGGAAGGCCGCACCAGCAAGGAGGCACAGGA < 41bp 1 0.666151154798702 1 0.33703225851059 experiment 0.667697690402596 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1398411 chr16:1398426 synonymous SNV . 0 36 hm5C_associated_SNPs_18020 0 0 0 0 1 chromatin 1 0.500231422730483 1 0.999537154539034 hm5C_site_19393 DeepMRMD:1;iRNA_m5C:0.999537154539034 19394 chr16 15675129 15675129 1 + C T CESC 15675136 + 15675116 15675156 41 TAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTC TAATCCAGAAGATTCACAAACTGGTGCAGAAGAGAGACTTC < 41bp 1 0.64199593341337 1 0.385537892580032 experiment 0.716008133173261 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15675136 chr16:15675129 synonymous SNV . 0 14 hm5C_associated_SNPs_18022 0 0 0 0 2 Cytosol 1 0.500231643383844 1 0.999536713232312 hm5C_site_19394 DeepMRMD:1;iRNA_m5C:0.999536713232312 19395 chr2 182766569 182766569 1 + G A CESC 182766571 + 182766551 182766591 41 TTCTCAAGTCTCCGGGACGCCCCTGCAGAGAATTGGAAGTA TTCTCAAGTCTCCGGGACACCCCTGCAGAGAATTGGAAGTA < 41bp 1 0.293017152555715 1 0.0407386422157288 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182766571 chr2:182766569 synonymous SNV . 0 19 hm5C_associated_SNPs_18023 0 0 1 0 1 Ribosome 1 0.50023164268308 1 0.99953671463384 hm5C_site_19395 DeepMRMD:1;iRNA_m5C:0.99953671463384 19396 chrX 100668146 100668146 1 + C T CESC 100668159 + 100668139 100668179 41 GTGGTGGCGCTTATGGTAGCCAAATGATGGGAGGGATGGGC GTGGTGGTGCTTATGGTAGCCAAATGATGGGAGGGATGGGC < 41bp 1 0.57037758828562 1 0.825967073440552 experiment 0.859244823428759 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HNRNPH2 ENSG00000126945 CDS Human protein_coding chrX:100668159 chrX:100668146 synonymous SNV . 0 8 hm5C_associated_SNPs_18024 0 0 1 0 0 Cytosol 1 0.500231643921092 0.348065853118896 0.999536712157815 hm5C_site_19396 DeepMRMD:0.348065853118896;iRNA_m5C:0.999536712157815 19397 chr16 84872301 84872301 1 + G A CESC 84872297 + 84872277 84872317 41 TCCTCATGCTGCACAACAAGCTTCGGGGCCAGGTGCAGCCT TCCTCATGCTGCACAACAAGCTTCAGGGCCAGGTGCAGCCT < 41bp 1 0.631210835839298 1 0.187900990247726 experiment 0.737578328321404 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84872297 chr16:84872301 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_18025 0 0 0 0 1 Nucleus 1 0.500231612109077 1 0.999536775781846 hm5C_site_19397 DeepMRMD:1;iRNA_m5C:0.999536775781846 19398 chr5 169018126 169018126 1 + C T CESC 169018123 + 169018103 169018143 41 CGAATGTTAGAAAGTTTGAGCTGCGAATGTGAAGCTATTAA CGAATGTTAGAAAGTTTGAGCTGTGAATGTGAAGCTATTAA < 41bp 1 0.22241701004605 1 0.11500209569931 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169018123 chr5:169018126 synonymous SNV . 0 24 hm5C_associated_SNPs_18026 0 0 1 0 1 chromatin 1 0.500296843531933 1 0.999406312936134 hm5C_site_19398 DeepMRMD:1;iRNA_m5C:0.999406312936134 19399 chr7 4260925 4260925 1 + C T CESC 4260905 + 4260885 4260925 41 CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAC CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAT < 41bp 1 0.201783286013024 1 0.574415922164917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4260905 chr7:4260925 nonsynonymous SNV 0.745 3 41 hm5C_associated_SNPs_18027 0 0 0 0 2 cytosol 1 0.500231643921092 0.851168155670166 0.999536712157815 hm5C_site_19399 DeepMRMD:0.851168155670166;iRNA_m5C:0.999536712157815 19400 chr11 65402802 65402802 1 + C T CESC 65402789 + 65402769 65402809 41 CATCTCACATGAGGGTGACCCAGCATGGCGCAGCGCCATCC CATCTCACATGAGGGTGACCCAGCATGGCGCAGTGCCATCC < 41bp 1 0.697778186516304 1 0.71066677570343 experiment 0.604443626967392 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402789 chr11:65402802 synonymous SNV . 0 34 hm5C_associated_SNPs_18028 0 0 1 0 0 Ribosome 1 0.500231643921091 0.57866644859314 0.999536712157817 hm5C_site_19400 DeepMRMD:0.57866644859314;iRNA_m5C:0.999536712157817 19401 chr11 65402802 65402802 1 + C T CESC 65402797 + 65402777 65402817 41 ATGAGGGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAAC ATGAGGGTGACCCAGCATGGCGCAGTGCCATCCTCAGCAAC < 41bp 1 0.345816238529472 1 0.104507565498352 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402797 chr11:65402802 synonymous SNV . 0 26 hm5C_associated_SNPs_18029 0 0 1 0 0 Ribosome 1 0.50023164415955 1 0.9995367116809 hm5C_site_19401 DeepMRMD:1;iRNA_m5C:0.9995367116809 19402 chr11 65402802 65402802 1 + C T CESC 65402799 + 65402779 65402819 41 GAGGGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACAC GAGGGTGACCCAGCATGGCGCAGTGCCATCCTCAGCAACAC < 41bp 1 0.168365165530345 1 0.0898236334323883 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402799 chr11:65402802 synonymous SNV . 0 24 hm5C_associated_SNPs_18030 0 0 1 0 0 Ribosome 1 0.500231643918801 1 0.999536712162398 hm5C_site_19402 DeepMRMD:1;iRNA_m5C:0.999536712162398 19403 chr11 65402802 65402802 1 + C T CESC 65402804 + 65402784 65402824 41 TGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCCCT TGACCCAGCATGGCGCAGTGCCATCCTCAGCAACACGCCCT < 41bp 1 0.0154432818862815 1 0.0348155200481415 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402804 chr11:65402802 synonymous SNV . 0 19 hm5C_associated_SNPs_18031 0 0 1 0 0 Ribosome 1 0.500231640613899 1 0.999536718772203 hm5C_site_19403 DeepMRMD:1;iRNA_m5C:0.999536718772203 19404 chr11 65402802 65402802 1 + C T CESC 65402805 + 65402785 65402825 41 GACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCCCTC GACCCAGCATGGCGCAGTGCCATCCTCAGCAACACGCCCTC < 41bp 1 0.0795344090888868 1 0.0678569972515106 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402805 chr11:65402802 synonymous SNV . 0 18 hm5C_associated_SNPs_18032 0 0 1 0 0 Ribosome 1 0.500231643921096 1 0.999536712157807 hm5C_site_19404 DeepMRMD:1;iRNA_m5C:0.999536712157807 19405 chrX 11781090 11781090 1 + C T CESC 11781084 + 11781064 11781104 41 CACGTTATGCCACATGCCAACATGAACGTGCATTATATCCC CACGTTATGCCACATGCCAACATGAATGTGCATTATATCCC < 41bp 1 0.620027441269826 1 0.0683413445949554 experiment 0.759945117460347 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSL3 ENSG00000005302 CDS Human protein_coding chrX:11781084 chrX:11781090 synonymous SNV . 0 27 hm5C_associated_SNPs_18033 0 0 1 0 1 Cytosol 1 0.500231643466336 1 0.999536713067328 hm5C_site_19405 DeepMRMD:1;iRNA_m5C:0.999536713067328 19406 chr17 78172351 78172351 1 + G A CESC 78172335 + 78172315 78172355 41 CATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACC CATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCAGACC < 41bp 1 0.315140735279675 1 0.0554681718349457 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172335 chr17:78172351 synonymous SNV . 0 37 hm5C_associated_SNPs_18035 0 0 0 0 1 nucleus 1 0.500231643659668 1 0.999536712680665 hm5C_site_19406 DeepMRMD:1;iRNA_m5C:0.999536712680665 19407 chr17 78172351 78172351 1 + G A CESC 78172336 + 78172316 78172356 41 ATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACCA ATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCAGACCA < 41bp 1 0.539026748191989 1 0.678072452545166 experiment 0.921946503616021 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172336 chr17:78172351 synonymous SNV . 0 36 hm5C_associated_SNPs_18036 0 0 0 0 1 nucleus 1 0.500231643947918 0.643855094909668 0.999536712104165 hm5C_site_19407 DeepMRMD:0.643855094909668;iRNA_m5C:0.999536712104165 19408 chr17 37360380 37360380 1 + G A CESC 37360369 + 37360349 37360389 41 AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCAT AAGGTGAAGGGGAATGTGTTCAAAAACAAGCAGATTCTCAT < 41bp 1 0.635778001595054 1 0.581879675388336 experiment 0.728443996809892 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360369 chr17:37360380 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_18037 0 0 1 0 2 chromatin 1 0.500231643921092 0.836240649223328 0.999536712157815 hm5C_site_19408 DeepMRMD:0.836240649223328;iRNA_m5C:0.999536712157815 19409 chr22 38321951 38321951 1 + A G CESC 38321955 + 38321935 38321975 41 GGGCCACCCGGAGTCCACACCCAAGTCCCTGCACCCCTGGT GGGCCACCCGGAGTCCGCACCCAAGTCCCTGCACCCCTGGT < 41bp 1 0.140722978963889 1 0.572691261768341 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38321955 chr22:38321951 nonsynonymous SNV 0.104 0 17 hm5C_associated_SNPs_18038 0 0 0 0 1 Ribosome 1 0.500231657594313 0.854617476463318 0.999536684811373 hm5C_site_19409 DeepMRMD:0.854617476463318;iRNA_m5C:0.999536684811373 19410 chr14 61346446 61346446 1 + A G CESC 61346465 + 61346445 61346485 41 CACTGGCACCTATTCACAAGCTTGAAGAAGCTCTGTATGAA CGCTGGCACCTATTCACAAGCTTGAAGAAGCTCTGTATGAA < 41bp 1 0.644521803872707 1 0.671913802623749 experiment 0.710956392254586 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61346465 chr14:61346446 synonymous SNV . 0 2 hm5C_associated_SNPs_18039 0 0 1 0 0 Ribosome 1 0.500231642714886 0.656172394752502 0.999536714570228 hm5C_site_19410 DeepMRMD:0.656172394752502;iRNA_m5C:0.999536714570228 19411 chr3 170110061 170110061 1 + G T CESC 170110073 + 170110053 170110093 41 GAACTGAGGCAGAGATTGGACCATGCTGAGGCCGATAGGCA GAACTGAGTCAGAGATTGGACCATGCTGAGGCCGATAGGCA < 41bp 1 0.164894561357456 1 0.101405888795853 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110073 chr3:170110061 nonsynonymous SNV 0.929 5 9 hm5C_associated_SNPs_18040 0 0 1 0 1 Nucleus 1 0.500231971822157 1 0.999536056355686 hm5C_site_19411 DeepMRMD:1;iRNA_m5C:0.999536056355686 19412 chr12 58001381 58001381 1 + G A CESC 58001367 + 58001347 58001387 41 AGTACGGCACCATTGTCATCCAGTACGTCTTCCCGCCCGGT AGTACGGCACCATTGTCATCCAGTACGTCTTCCCACCCGGT < 41bp 1 0.453986516081927 1 0.358204334974289 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DTX3 ENSG00000178498 CDS Human protein_coding chr12:58001367 chr12:58001381 synonymous SNV . 0 35 hm5C_associated_SNPs_18041 0 0 1 0 0 exosome 1 0.500231643920918 1 0.999536712158163 hm5C_site_19412 DeepMRMD:1;iRNA_m5C:0.999536712158163 19413 chr15 78841246 78841246 1 + G A CESC 78841245 + 78841225 78841265 41 AAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAAGAA AAGAAGAAGCCAAAGCTGAGCATGAGAAGAAAGAAAAAGAA < 41bp 1 0.630047266286163 1 0.376025229692459 experiment 0.739905467427673 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78841245 chr15:78841246 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_18042 0 0 1 0 0 Ribosome 1 0.500635031069118 1 0.998729937861764 hm5C_site_19413 DeepMRMD:1;iRNA_m5C:0.998729937861764 19414 chr15 64410320 64410320 1 + C T CESC 64410330 + 64410310 64410350 41 TTTTAGATGCCACAGTGGAGCTATCCTTGGACAGCACACAA TTTTAGATGCTACAGTGGAGCTATCCTTGGACAGCACACAA < 41bp 1 0.0616734528495752 1 0.120413303375244 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410330 chr15:64410320 synonymous SNV . 0 11 hm5C_associated_SNPs_18043 0 0 1 0 1 Ribosome 1 0.500231643907085 1 0.999536712185831 hm5C_site_19414 DeepMRMD:1;iRNA_m5C:0.999536712185831 19415 chr15 64410320 64410320 1 + C T CESC 64410334 + 64410314 64410354 41 AGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAAATA AGATGCTACAGTGGAGCTATCCTTGGACAGCACACAAAATA < 41bp 1 0.044524109723002 1 0.109552294015884 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410334 chr15:64410320 synonymous SNV . 0 7 hm5C_associated_SNPs_18044 0 0 1 0 1 Ribosome 1 0.50020046054091 1 0.999599078918179 hm5C_site_19415 DeepMRMD:1;iRNA_m5C:0.999599078918179 19416 chr15 75499531 75499531 1 + C T CESC 75499548 + 75499528 75499568 41 ATGCCCGGGATGACCTCTCTCTCTATGGAGCATCCCCTGGG ATGTCCGGGATGACCTCTCTCTCTATGGAGCATCCCCTGGG < 41bp 1 0.693048604218994 1 0.899000644683838 experiment 0.613902791562013 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control C15orf39 ENSG00000167173 CDS Human protein_coding chr15:75499548 chr15:75499531 nonsynonymous SNV 0.768 2 4 hm5C_associated_SNPs_18045 0 0 1 0 0 Cytosol 1 0.500231643921092 0.201998710632324 0.999536712157815 hm5C_site_19416 DeepMRMD:0.201998710632324;iRNA_m5C:0.999536712157815 19417 chr1 162725037 162725037 1 + C T CESC 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCATCGA < 41bp 1 0.430244412910705 1 0.803755462169647 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725037 nonsynonymous SNV 0.995 2 38 hm5C_associated_SNPs_18046 0 0 0 0 2 nucleolus 1 0.500230504725305 0.392489075660706 0.999538990549391 hm5C_site_19417 DeepMRMD:0.392489075660706;iRNA_m5C:0.999538990549391 19418 chr21 37612076 37612076 1 + G A CESC 37612088 + 37612068 37612108 41 TGTTTGTCGTGCTGGACAGCCTGGCCTGCACGGATGGTGCC TGTTTGTCATGCTGGACAGCCTGGCCTGCACGGATGGTGCC < 41bp 1 0.415489129102153 1 0.276284456253052 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOPEY2 ENSG00000142197 CDS Human protein_coding chr21:37612088 chr21:37612076 nonsynonymous SNV 0.599 3 9 hm5C_associated_SNPs_18047 0 0 0 0 1 cytosol 1 0.500231644365697 1 0.999536711268606 hm5C_site_19418 DeepMRMD:1;iRNA_m5C:0.999536711268606 19419 chr2 28521316 28521316 1 + A G CESC 28521298 + 28521278 28521318 41 TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTACA TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTGCA < 41bp 1 0.228533077084133 1 0.155998289585114 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28521298 chr2:28521316 nonsynonymous SNV 0.986 4 39 hm5C_associated_SNPs_18048 0 0 1 1 1 Nucleus 1 0.500231643921722 1 0.999536712156556 hm5C_site_19419 DeepMRMD:1;iRNA_m5C:0.999536712156556 19420 chr10 81036971 81036971 1 + G A CESC 81036966 + 81036946 81036986 41 TCCTCCTGGTGCGAAGAGCTCGGCCGCCTGCTGCTGCTCCG TCCTCCTGGTGCGAAGAGCTCGGCCACCTGCTGCTGCTCCG < 41bp 1 0.450375257335588 1 0.316440463066101 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:81036966 chr10:81036971 nonsynonymous SNV 0.998 3 26 hm5C_associated_SNPs_18049 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19420 DeepMRMD:1;iRNA_m5C:0.999536712157815 19421 chr5 75970326 75970326 1 + C T CESC 75970317 + 75970297 75970337 41 TCCAGATTGTTGGAAACCTCCTGTACTATCGGTACATGAAT TCCAGATTGTTGGAAACCTCCTGTACTATTGGTACATGAAT < 41bp 1 0.303068257896694 1 0.0962386727333069 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75970317 chr5:75970326 nonsynonymous SNV 0.998 5 30 hm5C_associated_SNPs_18050 0 0 0 0 0 Cytosol 1 0.500231645198519 1 0.999536709602961 hm5C_site_19421 DeepMRMD:1;iRNA_m5C:0.999536709602961 19422 chr6 108497868 108497868 1 + G A CESC 108497862 + 108497842 108497882 41 CCGCGGTCACGCAGCTGGAGCCGCACGGCCTGGAGCTGGCC CCGCGGTCACGCAGCTGGAGCCGCACAGCCTGGAGCTGGCC < 41bp 1 0.524833068892677 1 0.0887146294116974 experiment 0.950333862214647 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108497862 chr6:108497868 nonsynonymous SNV 0.865 0 27 hm5C_associated_SNPs_18051 0 0 0 0 1 exosome 1 0.500231647578946 1 0.999536704842108 hm5C_site_19422 DeepMRMD:1;iRNA_m5C:0.999536704842108 19423 chr7 76110039 76110039 1 + G A CESC 76110024 + 76110004 76110044 41 GCCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGC GCCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCACTGGC < 41bp 1 0.404525322207464 1 0.159285664558411 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110024 chr7:76110039 synonymous SNV . 0 36 hm5C_associated_SNPs_18052 0 0 0 0 1 Nucleus 1 0.50022845079988 1 0.999543098400239 hm5C_site_19423 DeepMRMD:1;iRNA_m5C:0.999543098400239 19424 chr7 76110039 76110039 1 + G A CESC 76110025 + 76110005 76110045 41 CCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCC CCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCACTGGCC < 41bp 1 0.33153747718648 1 0.239912003278732 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110025 chr7:76110039 synonymous SNV . 0 35 hm5C_associated_SNPs_18053 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19424 DeepMRMD:1;iRNA_m5C:0.999536712157815 19425 chr7 76110039 76110039 1 + G A CESC 76110029 + 76110009 76110049 41 CAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCCCCTT CAGCATCCCCTTGGGCCAGGCAGACCCCTCACTGGCCCCTT < 41bp 1 0.225581814113016 1 0.627800107002258 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110029 chr7:76110039 synonymous SNV . 0 31 hm5C_associated_SNPs_18054 0 0 0 0 1 Nucleus 1 0.500231643920895 0.744399785995484 0.999536712158211 hm5C_site_19425 DeepMRMD:0.744399785995484;iRNA_m5C:0.999536712158211 19426 chr6 34730472 34730472 1 + A G CESC 34730453 + 34730433 34730473 41 ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGGC < 41bp 1 0.605285429427804 1 0.771468162536621 experiment 0.789429141144391 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRPC ENSG00000124562 CDS Human protein_coding chr6:34730453 chr6:34730472 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_18055 0 0 1 0 1 Ribosome 1 0.500231637352145 0.457063674926758 0.999536725295709 hm5C_site_19426 DeepMRMD:0.457063674926758;iRNA_m5C:0.999536725295709 19427 chr17 33592719 33592719 1 + G A CESC 33592726 + 33592706 33592746 41 GTTACTACAGATCGGTGATGCGTCGGATGTTCTAACCGATC GTTACTACAGATCAGTGATGCGTCGGATGTTCTAACCGATC < 41bp 1 0.327991405173555 1 0.369344234466553 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLFN5 ENSG00000166750 CDS Human protein_coding chr17:33592726 chr17:33592719 nonsynonymous SNV 0.003 1 14 hm5C_associated_SNPs_18057 0 0 0 0 0 nucleus 1 0.500231018165773 1 0.999537963668453 hm5C_site_19427 DeepMRMD:1;iRNA_m5C:0.999537963668453 19428 chr1 39853293 39853293 1 + T G CESC 39853302 + 39853282 39853322 41 AAGCTAAGATGTCTGAGTTGCGAGTCACTCTGGATCCAGTG AAGCTAAGATGGCTGAGTTGCGAGTCACTCTGGATCCAGTG < 41bp 1 0.154504767138226 1 0.527155995368958 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39853302 chr1:39853293 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_18058 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643917415 0.945688009262084 0.999536712165169 hm5C_site_19428 DeepMRMD:0.945688009262084;iRNA_m5C:0.999536712165169 19429 chr22 29533340 29533340 1 + C T CESC 29533346 + 29533326 29533366 41 ACAGCTCTCGTGGGCGCCTGCGGTGGGAACTACTCAGCCAT ACAGCTCTCGTGGGTGCCTGCGGTGGGAACTACTCAGCCAT < 41bp 1 0.512358263786783 1 0.813004076480865 experiment 0.975283472426435 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533346 chr22:29533340 synonymous SNV . 0 15 hm5C_associated_SNPs_18059 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921223 0.37399184703827 0.999536712157554 hm5C_site_19429 DeepMRMD:0.37399184703827;iRNA_m5C:0.999536712157554 19430 chr1 117631444 117631444 1 + C T CESC 117631430 + 117631410 117631450 41 GTGATTCTTCCAGGGCACCTCAACACCTTTGCTTCGAATAG GTGATTCTTCCAGGGCACCTCAACACCTTTGCTTTGAATAG < 41bp 1 0.557899835007005 1 0.419727385044098 experiment 0.88420032998599 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117631430 chr1:117631444 stopgain 0.987 0 35 hm5C_associated_SNPs_18060 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_19430 DeepMRMD:1;iRNA_m5C:0.999536712157812 19431 chr7 128490115 128490115 1 + G A CESC 128490100 + 128490080 128490120 41 GCGCCAGCCCTACGCTCCTCCCCGGCCCGGCGCCCGCCCCA GCGCCAGCCCTACGCTCCTCCCCGGCCCGGCGCCCACCCCA < 41bp 1 0.455308521914612 1 0.487265795469284 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128490100 chr7:128490115 nonsynonymous SNV 0.673 2 36 hm5C_associated_SNPs_18061 0 0 0 0 2 chromatin 1 0.500231643922849 1 0.999536712154302 hm5C_site_19431 DeepMRMD:1;iRNA_m5C:0.999536712154302 19432 chr7 128490115 128490115 1 + G A CESC 128490107 + 128490087 128490127 41 CCCTACGCTCCTCCCCGGCCCGGCGCCCGCCCCACACACTG CCCTACGCTCCTCCCCGGCCCGGCGCCCACCCCACACACTG < 41bp 1 0.359408750724762 1 0.263053327798843 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128490107 chr7:128490115 nonsynonymous SNV 0.673 2 29 hm5C_associated_SNPs_18062 0 0 0 0 2 chromatin 1 0.500231644488665 1 0.999536711022669 hm5C_site_19432 DeepMRMD:1;iRNA_m5C:0.999536711022669 19433 chrX 73046072 73046072 1 + C A CESC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.345014594886721 1 0.905385673046112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046072 . . 0 18 hm5C_associated_SNPs_18063 0 0 1 11 0 unknown 1 0.500231938931993 0.189228653907776 0.999536122136015 hm5C_site_19433 DeepMRMD:0.189228653907776;iRNA_m5C:0.999536122136015 19434 chrX 73046072 73046072 1 + C A CESC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAATG < 41bp 1 0.0665782381892902 1 0.0737722814083099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046072 . . 0 24 hm5C_associated_SNPs_18064 0 0 1 11 0 unknown 1 0.500231643921095 1 0.999536712157811 hm5C_site_19434 DeepMRMD:1;iRNA_m5C:0.999536712157811 19435 chrX 73046072 73046072 1 + C A CESC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGTCTCTCTAGAGAAAAAT < 41bp 1 0.0616509729323631 1 0.0856037437915802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046072 . . 0 25 hm5C_associated_SNPs_18065 0 0 1 11 0 unknown 1 0.500231644413635 1 0.99953671117273 hm5C_site_19435 DeepMRMD:1;iRNA_m5C:0.99953671117273 19436 chr20 34832792 34832792 1 + G A CESC 34832788 + 34832768 34832808 41 TACCACCAGCTTGGTGAGATCCCCGCTGACTTCTTCGTAGA TACCACCAGCTTGGTGAGATCCCCACTGACTTCTTCGTAGA < 41bp 1 0.582049360692064 1 0.665118217468262 experiment 0.835901278615872 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control AAR2 ENSG00000131043 CDS Human protein_coding chr20:34832788 chr20:34832792 nonsynonymous SNV 0.871 1 25 hm5C_associated_SNPs_18066 0 0 1 0 1 Ribosome 1 0.500231643921065 0.669763565063476 0.99953671215787 hm5C_site_19436 DeepMRMD:0.669763565063476;iRNA_m5C:0.99953671215787 19437 chr12 19427794 19427794 1 + G A CESC 19427793 + 19427773 19427813 41 CAGATCTTAGAGGTGGAAATCGCCCCAATACAGGGCCCTTA CAGATCTTAGAGGTGGAAATCACCCCAATACAGGGCCCTTA < 41bp 1 0.38000898257437 1 0.122583597898483 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHA5 ENSG00000052126 CDS Human protein_coding chr12:19427793 chr12:19427794 nonsynonymous SNV 0.866 0 22 hm5C_associated_SNPs_18067 0 0 1 0 0 Nucleus 1 0.500231643900416 1 0.999536712199168 hm5C_site_19437 DeepMRMD:1;iRNA_m5C:0.999536712199168 19438 chr12 6646123 6646123 1 + G A CESC 6646142 + 6646122 6646162 41 CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA CACTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA < 41bp 1 0.42345960148757 1 0.107230812311172 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646142 chr12:6646123 nonsynonymous SNV 0.524 1 2 hm5C_associated_SNPs_18068 0 0 1 0 2 Ribosome 1 0.50017206030213 1 0.99965587939574 hm5C_site_19438 DeepMRMD:1;iRNA_m5C:0.99965587939574 19439 chr2 63834106 63834106 1 + T C CESC 63834096 + 63834076 63834116 41 GACAGAAGAAAAAGAAAGTGCTTTTGAATTTCTTTCCTCTG GACAGAAGAAAAAGAAAGTGCTTTTGAATTCCTTTCCTCTG < 41bp 1 0.0845232898881563 1 0.0530009269714355 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MDH1 ENSG00000014641 CDS Human protein_coding chr2:63834096 chr2:63834106 synonymous SNV . 0 31 hm5C_associated_SNPs_18070 0 0 1 0 0 Cytosol 1 0.500231644408893 1 0.999536711182214 hm5C_site_19439 DeepMRMD:1;iRNA_m5C:0.999536711182214 19440 chr2 102959731 102959731 1 + T G CESC 102959733 + 102959713 102959753 41 ACAGGTTGCTTTCTTAGTTTCAGCAATGGGCTGGCTTGTCT ACAGGTTGCTTTCTTAGTGTCAGCAATGGGCTGGCTTGTCT < 41bp 1 0.606587879213512 1 0.590797781944275 experiment 0.786824241572977 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102959733 chr2:102959731 nonsynonymous SNV 0.191 0 19 hm5C_associated_SNPs_18071 0 0 0 0 1 Endoplasmic reticulum 1 0.500234095379627 0.81840443611145 0.999531809240747 hm5C_site_19440 DeepMRMD:0.81840443611145;iRNA_m5C:0.999531809240747 19441 chr3 47030600 47030600 1 + C T CESC 47030605 + 47030585 47030625 41 AACATAGAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGT AACATAGAGGCAGGCTGGGGCCAAGTGCTAGTGCCCCGAGT < 41bp 1 0.0975176619884628 1 0.659772992134094 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030605 chr3:47030600 nonsynonymous SNV 0.307 0 16 hm5C_associated_SNPs_18072 0 0 1 0 2 Nucleus 1 0.500231643921092 0.680454015731812 0.999536712157815 hm5C_site_19441 DeepMRMD:0.680454015731812;iRNA_m5C:0.999536712157815 19442 chr3 47030600 47030600 1 + C T CESC 47030606 + 47030586 47030626 41 ACATAGAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGTG ACATAGAGGCAGGCTGGGGCCAAGTGCTAGTGCCCCGAGTG < 41bp 1 0.405879126943395 1 0.61117684841156 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030606 chr3:47030600 nonsynonymous SNV 0.307 0 15 hm5C_associated_SNPs_18073 0 0 1 0 2 Nucleus 1 0.500231643921157 0.77764630317688 0.999536712157686 hm5C_site_19442 DeepMRMD:0.77764630317688;iRNA_m5C:0.999536712157686 19443 chr3 47030600 47030600 1 + C T CESC 47030618 + 47030598 47030638 41 GCCGGGGCCAAGTGCTAGTGCCCCGAGTGCTGGCACTGTTG GCTGGGGCCAAGTGCTAGTGCCCCGAGTGCTGGCACTGTTG < 41bp 1 0.177611245416619 1 0.0404212474822998 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030618 chr3:47030600 nonsynonymous SNV 0.307 0 3 hm5C_associated_SNPs_18074 0 0 1 0 2 Nucleus 1 0.500231634527358 1 0.999536730945285 hm5C_site_19443 DeepMRMD:1;iRNA_m5C:0.999536730945285 19444 chr3 47030600 47030600 1 + C T CESC 47030619 + 47030599 47030639 41 CCGGGGCCAAGTGCTAGTGCCCCGAGTGCTGGCACTGTTGA CTGGGGCCAAGTGCTAGTGCCCCGAGTGCTGGCACTGTTGA < 41bp 1 0.336232411512908 1 0.582248210906982 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030619 chr3:47030600 nonsynonymous SNV 0.307 0 2 hm5C_associated_SNPs_18075 0 0 1 0 2 Nucleus 1 0.500233647840776 0.835503578186036 0.999532704318449 hm5C_site_19444 DeepMRMD:0.835503578186036;iRNA_m5C:0.999532704318449 19445 chr14 24909613 24909613 1 + G A CESC 24909627 - 24909607 24909647 41 TTCGCCTGGGCCTGGGGGGCCCCATCGGCTCAGGCCACCAA TTCGCCTGGGCCTGGGGGGCCCCATCGGCTCAGGTCACCAA < 41bp 1 0.32303472137672 1 0.155137091875076 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SDR39U1 ENSG00000100445 CDS Human protein_coding chr14:24909627 chr14:24909613 synonymous SNV . 0 35 hm5C_associated_SNPs_18077 0 0 1 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19445 DeepMRMD:1;iRNA_m5C:0.999536712157815 19446 chr9 133738155 133738155 1 + C T CESC 133738171 + 133738151 133738191 41 TCTACGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAG TCTATGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAG < 41bp 1 0.113819384188026 1 0.123953431844711 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133738171 chr9:133738155 synonymous SNV . 0 5 hm5C_associated_SNPs_18078 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644114516 1 0.999536711770968 hm5C_site_19446 DeepMRMD:1;iRNA_m5C:0.999536711770968 19447 chr7 128407652 128407652 1 + C T CESC 128407640 + 128407620 128407660 41 GAAGAGACCAAAGACTGGATCCTTCCCTCAGACTATGATCA GAAGAGACCAAAGACTGGATCCTTCCCTCAGATTATGATCA < 41bp 1 0.0213300574455008 1 0.0525286793708801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407640 chr7:128407652 synonymous SNV . 0 33 hm5C_associated_SNPs_18079 0 0 1 0 1 Ribosome 1 0.500230083183181 1 0.999539833633639 hm5C_site_19447 DeepMRMD:1;iRNA_m5C:0.999539833633639 19448 chr7 128407652 128407652 1 + C T CESC 128407641 + 128407621 128407661 41 AAGAGACCAAAGACTGGATCCTTCCCTCAGACTATGATCAT AAGAGACCAAAGACTGGATCCTTCCCTCAGATTATGATCAT < 41bp 1 0.173930904862816 1 0.0527183711528778 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407641 chr7:128407652 synonymous SNV . 0 32 hm5C_associated_SNPs_18080 0 0 1 0 1 Ribosome 1 0.500231643359738 1 0.999536713280523 hm5C_site_19448 DeepMRMD:1;iRNA_m5C:0.999536713280523 19449 chr7 128407652 128407652 1 + C T CESC 128407644 + 128407624 128407664 41 AGACCAAAGACTGGATCCTTCCCTCAGACTATGATCATGCA AGACCAAAGACTGGATCCTTCCCTCAGATTATGATCATGCA < 41bp 1 0.116738893405352 1 0.167196929454803 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407644 chr7:128407652 synonymous SNV . 0 29 hm5C_associated_SNPs_18081 0 0 1 0 1 Ribosome 1 0.500231643921077 1 0.999536712157846 hm5C_site_19449 DeepMRMD:1;iRNA_m5C:0.999536712157846 19450 chr11 65396113 65396113 1 + G A CESC 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTCGTGCTGACCTACATCGCACCCTGGCAGATCACCTG < 41bp 1 0.261487960227781 1 0.444856196641922 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396113 synonymous SNV . 0 24 hm5C_associated_SNPs_18082 0 0 0 0 2 Ribosome 1 0.50023164392033 1 0.99953671215934 hm5C_site_19450 DeepMRMD:1;iRNA_m5C:0.99953671215934 19451 chr17 7479881 7479881 1 + G A CESC 7479886 + 7479866 7479906 41 GGAGACTACATGGGCGCCTCCTGTCACGCCTGTATCGGGGG GGAGACTACATGGGCACCTCCTGTCACGCCTGTATCGGGGG < 41bp 1 0.175582607870134 1 0.392135471105576 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479886 chr17:7479881 nonsynonymous SNV 0.940 3 16 hm5C_associated_SNPs_18083 0 0 1 0 1 Cytosol 1 0.500231643922317 1 0.999536712155365 hm5C_site_19451 DeepMRMD:1;iRNA_m5C:0.999536712155365 19452 chr17 7479881 7479881 1 + G A CESC 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACATGGGCACCTCCTGTCACGCCTGTATCGGGGGCACCAA < 41bp 1 0.626410477588498 1 0.0668170750141144 experiment 0.747179044823003 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479881 nonsynonymous SNV 0.940 3 10 hm5C_associated_SNPs_18084 0 0 1 0 1 Cytosol 1 0.500231643921086 1 0.999536712157828 hm5C_site_19452 DeepMRMD:1;iRNA_m5C:0.999536712157828 19453 chr17 7479881 7479881 1 + G A CESC 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ATGGGCACCTCCTGTCACGCCTGTATCGGGGGCACCAACGT < 41bp 1 0.573837057883373 1 0.178649514913559 experiment 0.852325884233255 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479881 nonsynonymous SNV 0.940 3 7 hm5C_associated_SNPs_18085 0 0 1 0 1 Cytosol 1 0.500231643921079 1 0.999536712157842 hm5C_site_19453 DeepMRMD:1;iRNA_m5C:0.999536712157842 19454 chr2 236817467 236817467 1 + C T CESC 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCATGTCAGCCT < 41bp 1 0.114743717161596 1 0.0508439838886261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817467 nonsynonymous SNV 0.915 3 33 hm5C_associated_SNPs_18086 0 0 1 0 2 Nucleus 1 0.500231648125229 1 0.999536703749542 hm5C_site_19454 DeepMRMD:1;iRNA_m5C:0.999536703749542 19455 chr16 85682307 85682307 1 + A G CESC 85682293 + 85682273 85682313 41 CCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTC CCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCGTCGCTC < 41bp 1 0.180787762800469 1 0.064752608537674 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85682293 chr16:85682307 nonsynonymous SNV 0.991 4 35 hm5C_associated_SNPs_18087 0 0 1 0 1 Cytosol 1 0.500231643977867 1 0.999536712044266 hm5C_site_19455 DeepMRMD:1;iRNA_m5C:0.999536712044266 19456 chrX 152991416 152991416 1 + C T CESC 152991420 + 152991400 152991440 41 TACACCCTGCTTCGGGCGGCCCGCTCCCGTGGAGCCGGCAC TACACCCTGCTTCGGGTGGCCCGCTCCCGTGGAGCCGGCAC < 41bp 1 0.175803882690792 1 0.361462563276291 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCD1 ENSG00000101986 CDS Human protein_coding chrX:152991420 chrX:152991416 nonsynonymous SNV 0.071 2 17 hm5C_associated_SNPs_18088 0 0 0 0 0 nucleolus 1 0.500231643921226 1 0.999536712157548 hm5C_site_19456 DeepMRMD:1;iRNA_m5C:0.999536712157548 19457 chr4 41648713 41648713 1 + C T CESC 41648710 + 41648690 41648730 41 ACCCCAATCCCATGAAATACCTGCGGCAACAGTCACTGCCT ACCCCAATCCCATGAAATACCTGTGGCAACAGTCACTGCCT < 41bp 1 0.577573580833504 1 0.243209421634674 experiment 0.844852838332993 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41648710 chr4:41648713 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_18089 0 0 0 0 0 Nucleus 1 0.500329756970463 1 0.999340486059073 hm5C_site_19457 DeepMRMD:1;iRNA_m5C:0.999340486059073 19458 chr7 148921506 148921506 1 + C T CESC 148921487 + 148921467 148921507 41 ACCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGGCT ACCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGGTT < 41bp 1 0.0733133621291729 1 0.0951167941093445 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921487 chr7:148921506 synonymous SNV . 0 40 hm5C_associated_SNPs_18090 0 0 1 0 0 Cytosol 1 0.500231643921123 1 0.999536712157754 hm5C_site_19458 DeepMRMD:1;iRNA_m5C:0.999536712157754 19459 chr7 148921506 148921506 1 + C T CESC 148921521 + 148921501 148921541 41 AGCGGCTGCACACGGGCGAGCGGCCTTTCCAATGTGCACTG AGCGGTTGCACACGGGCGAGCGGCCTTTCCAATGTGCACTG < 41bp 1 0.471125649001573 1 0.768805503845215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921521 chr7:148921506 synonymous SNV . 0 6 hm5C_associated_SNPs_18092 0 0 1 0 0 Cytosol 1 0.500231878696627 0.46238899230957 0.999536242606746 hm5C_site_19459 DeepMRMD:0.46238899230957;iRNA_m5C:0.999536242606746 19460 chr1 3342248 3342248 1 + C T CESC 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTGCAACTGCTGCTTCGGGCAGCAGACCAA < 41bp 1 0.316573160172123 1 0.185552418231964 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342248 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_18093 0 0 0 0 1 Nucleus 1 0.500231684145823 1 0.999536631708354 hm5C_site_19460 DeepMRMD:1;iRNA_m5C:0.999536631708354 19461 chr2 27455051 27455051 1 + T C CESC 27455031 + 27455011 27455051 41 GACAGCCTTTGCCGCCAGACCTGCTGCAACAGGCCAAGTGT GACAGCCTTTGCCGCCAGACCTGCTGCAACAGGCCAAGTGC < 41bp 1 0.338115742558274 1 0.518935322761536 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27455031 chr2:27455051 synonymous SNV . 0 41 hm5C_associated_SNPs_18094 0 0 1 0 1 Exosome 1 0.500231643921568 0.962129354476928 0.999536712156864 hm5C_site_19461 DeepMRMD:0.962129354476928;iRNA_m5C:0.999536712156864 19462 chr2 24964690 24964690 1 + G A CESC 24964700 + 24964680 24964720 41 CAACGTCAGCGGGAACTGTACAGTCAACAGCACCGACAGAG CAACGTCAGCAGGAACTGTACAGTCAACAGCACCGACAGAG < 41bp 1 0.277732118897152 1 0.426071316003799 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24964700 chr2:24964690 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_18095 0 0 1 0 0 Cytosol 1 0.500231591260565 1 0.99953681747887 hm5C_site_19462 DeepMRMD:1;iRNA_m5C:0.99953681747887 19463 chr17 79668134 79668134 1 + C T CESC 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATTGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.196277855656487 1 0.390263795852661 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668134 synonymous SNV . 0 7 hm5C_associated_SNPs_18096 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19463 DeepMRMD:1;iRNA_m5C:0.999536712157815 19464 chr12 52635363 52635363 1 + G T CESC 52635378 + 52635358 52635398 41 GCGCAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC GCGCATTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC < 41bp 1 0.362399618865997 1 0.629744529724121 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52635378 chr12:52635363 nonsynonymous SNV 0.824 3 6 hm5C_associated_SNPs_18097 0 0 1 0 1 Cytosol 1 0.500231635241227 0.740510940551758 0.999536729517545 hm5C_site_19464 DeepMRMD:0.740510940551758;iRNA_m5C:0.999536729517545 19465 chr9 116811863 116811863 1 + C T CESC 116811881 + 116811861 116811901 41 TGCTGCCCACCTACGTCAGGCTGGAGAAGCTGTTCACGGCC TGTTGCCCACCTACGTCAGGCTGGAGAAGCTGTTCACGGCC < 41bp 1 0.670259111862944 1 0.802424073219299 experiment 0.659481776274113 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116811881 chr9:116811863 synonymous SNV . 0 3 hm5C_associated_SNPs_18098 0 0 0 0 0 Cytosol 1 0.500231643851786 0.395151853561402 0.999536712296429 hm5C_site_19465 DeepMRMD:0.395151853561402;iRNA_m5C:0.999536712296429 19466 chrX 46433953 46433953 1 + G A CESC 46433942 + 46433922 46433962 41 AATCTTACCACGGCCGCCCTCTTCCGCTGGCGGACTAACAA AATCTTACCACGGCCGCCCTCTTCCGCTGGCAGACTAACAA < 41bp 1 0.239859768704304 1 0.403333395719528 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHST7 ENSG00000147119 CDS Human protein_coding chrX:46433942 chrX:46433953 nonsynonymous SNV 0.994 2 32 hm5C_associated_SNPs_18099 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643902215 1 0.99953671219557 hm5C_site_19466 DeepMRMD:1;iRNA_m5C:0.99953671219557 19467 chr5 112176277 112176277 1 + C T CESC 112176287 + 112176267 112176307 41 ATCTAACAATCGAATCCCCTCCAAATGAGTTAGCTGCTGGA ATCTAACAATTGAATCCCCTCCAAATGAGTTAGCTGCTGGA < 41bp 1 0.113107216474515 1 0.536866068840027 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APC ENSG00000134982 CDS Human protein_coding chr5:112176287 chr5:112176277 synonymous SNV . 0 11 hm5C_associated_SNPs_18100 1 0 0 0 0 Cytosol 1 0.5002316571992 0.926267862319946 0.9995366856016 hm5C_site_19467 DeepMRMD:0.926267862319946;iRNA_m5C:0.9995366856016 Hereditary cancer-predisposing syndrome Hereditary cancer-predisposing syndrome 19468 chr9 91077535 91077535 1 + G A CESC 91077534 + 91077514 91077554 41 GTTACCCAGTGGAAAGGAACCGTTCTGGACCAGGTGCCTGT GTTACCCAGTGGAAAGGAACCATTCTGGACCAGGTGCCTGT < 41bp 1 0.152382717426967 1 0.0625759363174438 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91077534 chr9:91077535 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_18102 0 0 1 0 0 Cytosol 1 0.500231643921098 1 0.999536712157805 hm5C_site_19468 DeepMRMD:1;iRNA_m5C:0.999536712157805 19469 chr9 91077535 91077535 1 + G A CESC 91077544 + 91077524 91077564 41 GGAAAGGAACCGTTCTGGACCAGGTGCCTGTAAATCCTTCT GGAAAGGAACCATTCTGGACCAGGTGCCTGTAAATCCTTCT < 41bp 1 0.447791101370821 1 0.39392364025116 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91077544 chr9:91077535 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_18103 0 0 1 0 0 Cytosol 1 0.500231643921091 1 0.999536712157817 hm5C_site_19469 DeepMRMD:1;iRNA_m5C:0.999536712157817 19470 chrX 153695759 153695759 1 + C T CESC 153695748 + 153695728 153695768 41 TTTACCTACTACCCTGATCCCAGCTTTGAGCCGCTGGGGCC TTTACCTACTACCCTGATCCCAGCTTTGAGCTGCTGGGGCC < 41bp 1 0.417542099464905 1 0.509492456912994 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695748 chrX:153695759 nonsynonymous SNV 0.891 1 32 hm5C_associated_SNPs_18104 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644075885 0.981015086174012 0.999536711848229 hm5C_site_19470 DeepMRMD:0.981015086174012;iRNA_m5C:0.999536711848229 19471 chr6 28333645 28333645 1 + T C CESC 28333663 + 28333643 28333683 41 TGTGATGACTGTGGGAAGACCTTCAGCCAGAGCTGCAGCCT TGCGATGACTGTGGGAAGACCTTCAGCCAGAGCTGCAGCCT < 41bp 1 0.654151157566092 1 0.381862074136734 experiment 0.691697684867816 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28333663 chr6:28333645 synonymous SNV . 0 3 hm5C_associated_SNPs_18105 0 0 0 0 0 exosome 1 0.500249360318999 1 0.999501279362002 hm5C_site_19471 DeepMRMD:1;iRNA_m5C:0.999501279362002 19472 chr19 14674818 14674818 1 + C T CESC 14674819 + 14674799 14674839 41 CCTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCT CCTAACAGAGTACGCGGGGTCCCTTTTCATCTACCTGCTCT < 41bp 1 0.165185018623741 1 0.0314308106899261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674819 chr19:14674818 nonsynonymous SNV 0.985 2 20 hm5C_associated_SNPs_18106 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19472 DeepMRMD:1;iRNA_m5C:0.999536712157815 19473 chr19 14674818 14674818 1 + C T CESC 14674820 + 14674800 14674840 41 CTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCTT CTAACAGAGTACGCGGGGTCCCTTTTCATCTACCTGCTCTT < 41bp 1 0.0353187164582597 1 0.0139857530593872 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674820 chr19:14674818 nonsynonymous SNV 0.985 2 19 hm5C_associated_SNPs_18107 0 0 1 0 2 Ribosome 1 0.500231643921118 1 0.999536712157763 hm5C_site_19473 DeepMRMD:1;iRNA_m5C:0.999536712157763 19474 chr15 69714744 69714744 1 + C T CESC 69714749 + 69714729 69714769 41 GTCAGAAAAGAGAAGCTATGCCCAATCCAAAGACTTCTTCT GTCAGAAAAGAGAAGTTATGCCCAATCCAAAGACTTCTTCT < 41bp 1 0.487482173269615 1 0.0493801832199097 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714749 chr15:69714744 nonsynonymous SNV 0.985 0 16 hm5C_associated_SNPs_18108 0 0 1 0 2 Nucleus 1 0.50023164392077 1 0.999536712158461 hm5C_site_19474 DeepMRMD:1;iRNA_m5C:0.999536712158461 19475 chr14 105936295 105936295 1 + G A CESC 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGCGGCGGATGAACTGGATCGACGCCCCGAATGACGTGTT < 41bp 1 0.563651921034756 1 0.681366324424744 experiment 0.872696157930488 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936295 nonsynonymous SNV 0.934 0 31 hm5C_associated_SNPs_18109 0 0 1 1 1 Cytosol 1 0.500231643922585 0.637267351150512 0.999536712154829 hm5C_site_19475 DeepMRMD:0.637267351150512;iRNA_m5C:0.999536712154829 19476 chr14 105936295 105936295 1 + G A CESC 105936315 + 105936295 105936335 41 GATGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG AATGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG < 41bp 1 0.534526544067363 1 0.685532450675964 experiment 0.930946911865274 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936315 chr14:105936295 nonsynonymous SNV 0.934 0 1 hm5C_associated_SNPs_18110 0 0 1 1 1 Cytosol 1 0.500231644550618 0.628935098648072 0.999536710898765 hm5C_site_19476 DeepMRMD:0.628935098648072;iRNA_m5C:0.999536710898765 19477 chr14 24779938 24779938 1 + G A CESC 24779945 + 24779925 24779965 41 TCGCGGGCCACAGGCACAGCCTTCCTGCTGCTGGCGGCGCT TCGCGGGCCACAGACACAGCCTTCCTGCTGCTGGCGGCGCT < 41bp 1 0.145585758575868 1 0.172274529933929 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTB4R2 ENSG00000213906;ENSG00000272658 CDS Human other chr14:24779945 chr14:24779938 nonsynonymous SNV 0.913 3 14 hm5C_associated_SNPs_18112 0 0 1 0 1 chromatin 1 0.500231641438691 1 0.999536717122617 hm5C_site_19477 DeepMRMD:1;iRNA_m5C:0.999536717122617 19478 chrX 40457942 40457942 1 + C T CESC 40457957 + 40457937 40457977 41 ACCTGCTCTTTCTTTCTGAACTGCAAGTGCTACATGATATT ACCTGTTCTTTCTTTCTGAACTGCAAGTGCTACATGATATT < 41bp 1 0.677818889995465 1 0.0283311307430267 experiment 0.64436222000907 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40457957 chrX:40457942 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_18113 0 0 0 0 2 Ribosome 1 0.500231637195054 1 0.999536725609891 hm5C_site_19478 DeepMRMD:1;iRNA_m5C:0.999536725609891 19479 chr9 138395642 138395642 1 + C T CESC 138395653 + 138395633 138395673 41 TCTTTGGCCCCACGGTCCGCCTGCCGGACCTCATCATCTTC TCTTTGGCCTCACGGTCCGCCTGCCGGACCTCATCATCTTC < 41bp 1 0.45642471720927 1 0.138496071100235 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MRPS2 ENSG00000122140 CDS Human protein_coding chr9:138395653 chr9:138395642 nonsynonymous SNV 0.008 1 10 hm5C_associated_SNPs_18114 0 0 1 0 0 Cytosol 1 0.500231643921746 1 0.999536712156507 hm5C_site_19479 DeepMRMD:1;iRNA_m5C:0.999536712156507 19480 chrX 99920260 99920260 1 + C T CESC 99920250 + 99920230 99920270 41 ATCTTGGCAGACATAGATCCCCCCAAGATCCGCTGTCCCCA ATCTTGGCAGACATAGATCCCCCCAAGATCTGCTGTCCCCA < 41bp 1 0.591636160007997 1 0.158672451972961 experiment 0.816727679984006 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99920250 chrX:99920260 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_18115 0 0 0 0 1 nucleus 1 0.500231644009408 1 0.999536711981185 hm5C_site_19480 DeepMRMD:1;iRNA_m5C:0.999536711981185 19481 chr11 33079519 33079519 1 + G T CESC 33079509 + 33079489 33079529 41 GGTCATACTAGACTGAGAAACCAGATAACAGAAGTCTTGGA GGTCATACTAGACTGAGAAACCAGATAACATAAGTCTTGGA < 41bp 1 0.546179299651898 1 0.506024360656738 experiment 0.907641400696203 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33079509 chr11:33079519 stopgain 0.998 1 31 hm5C_associated_SNPs_18116 0 0 0 0 1 Ribosome 1 0.500231658690313 0.987951278686524 0.999536682619374 hm5C_site_19481 DeepMRMD:0.987951278686524;iRNA_m5C:0.999536682619374 19482 chr11 126143249 126143249 1 + G A CESC 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCAATGCTCCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.452828859777537 1 0.0818069577217102 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143249 nonsynonymous SNV 0.004 0 14 hm5C_associated_SNPs_18117 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19482 DeepMRMD:1;iRNA_m5C:0.999536712157815 19483 chr16 816671 816671 1 + G A CESC 816657 + 816637 816677 41 CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCC CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGACCACCC < 41bp 1 0.0158406146215576 1 0.159428030252457 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816657 chr16:816671 nonsynonymous SNV 0.178 0 35 hm5C_associated_SNPs_18118 0 0 0 0 2 nucleus 1 0.500231643921098 1 0.999536712157804 hm5C_site_19483 DeepMRMD:1;iRNA_m5C:0.999536712157804 19484 chr16 816671 816671 1 + G A CESC 816658 + 816638 816678 41 CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCCT CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGACCACCCT < 41bp 1 0.0100231904889397 1 0.0714310109615326 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816658 chr16:816671 nonsynonymous SNV 0.178 0 34 hm5C_associated_SNPs_18119 0 0 0 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19484 DeepMRMD:1;iRNA_m5C:0.999536712157815 19485 chr15 69737222 69737222 1 + G A CESC 69737220 + 69737200 69737240 41 CAGATGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTG CAGATGGGTAGATCATAAGCCCACCTCTAACATGCAAACTG < 41bp 1 0.132096176873894 1 0.0333828330039978 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737220 chr15:69737222 nonsynonymous SNV 0.983 0 23 hm5C_associated_SNPs_18120 0 0 1 0 1 Nucleus 1 0.500231643911656 1 0.999536712176688 hm5C_site_19485 DeepMRMD:1;iRNA_m5C:0.999536712176688 19486 chr15 69737222 69737222 1 + G A CESC 69737224 + 69737204 69737244 41 TGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTGAAAC TGGGTAGATCATAAGCCCACCTCTAACATGCAAACTGAAAC < 41bp 1 0.302685051131552 1 0.332107245922089 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737224 chr15:69737222 nonsynonymous SNV 0.983 0 19 hm5C_associated_SNPs_18121 0 0 1 0 1 Nucleus 1 0.50023164392089 1 0.999536712158221 hm5C_site_19486 DeepMRMD:1;iRNA_m5C:0.999536712158221 19487 chr1 6681476 6681476 1 + G A CESC 6681488 + 6681468 6681508 41 CAGATGACGATTCCTGGGACCTCGTGACCTGCTTCTGCATG CAGATGACAATTCCTGGGACCTCGTGACCTGCTTCTGCATG < 41bp 1 0.336427873450511 1 0.0231766104698181 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681488 chr1:6681476 nonsynonymous SNV 0.996 3 9 hm5C_associated_SNPs_18122 0 0 1 0 1 cytosol 1 0.500231643916192 1 0.999536712167615 hm5C_site_19487 DeepMRMD:1;iRNA_m5C:0.999536712167615 19488 chr8 2092591 2092591 1 + T C CESC 2092590 + 2092570 2092610 41 AACCTCTTCCGTCCAAAGACCTTGAATCTGACCTGCACGGT AACCTCTTCCGTCCAAAGACCCTGAATCTGACCTGCACGGT < 41bp 1 0.13906684305778 1 0.244127690792084 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2092590 chr8:2092591 synonymous SNV . 0 22 hm5C_associated_SNPs_18123 0 0 0 0 1 exosome 1 0.500231643921088 1 0.999536712157824 hm5C_site_19488 DeepMRMD:1;iRNA_m5C:0.999536712157824 19489 chr19 42729207 42729207 1 + A G CESC 42729206 + 42729186 42729226 41 GAGTTCTTGGAGCATCAGGGCACCCACTTTGACTCCCTAGA GAGTTCTTGGAGCATCAGGGCGCCCACTTTGACTCCCTAGA < 41bp 1 0.140766875591602 1 0.0885734856128693 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF526 ENSG00000167625 CDS Human protein_coding chr19:42729206 chr19:42729207 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_18124 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_19489 DeepMRMD:1;iRNA_m5C:0.999536712157815 19490 chr12 1890209 1890209 1 + T C CESC 1890217 + 1890197 1890237 41 CAGTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAG CAGTGGGACATGCTTGCCACCCCTCAGTATCGGGGAGTAAG < 41bp 1 0.0511139698047835 1 0.0353023707866669 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890217 chr12:1890209 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_18125 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19490 DeepMRMD:1;iRNA_m5C:0.999536712157815 19491 chr12 1890209 1890209 1 + T C CESC 1890218 + 1890198 1890238 41 AGTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGA AGTGGGACATGCTTGCCACCCCTCAGTATCGGGGAGTAAGA < 41bp 1 0.349886414473247 1 0.0574413239955902 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890218 chr12:1890209 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_18126 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19491 DeepMRMD:1;iRNA_m5C:0.999536712157815 19492 chr12 1890209 1890209 1 + T C CESC 1890219 + 1890199 1890239 41 GTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAG GTGGGACATGCTTGCCACCCCTCAGTATCGGGGAGTAAGAG < 41bp 1 0.537773510154571 1 0.460081279277802 experiment 0.924452979690858 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890219 chr12:1890209 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_18127 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19492 DeepMRMD:1;iRNA_m5C:0.999536712157815 19493 chr12 1890209 1890209 1 + T C CESC 1890221 + 1890201 1890241 41 GGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAGCA GGGACATGCTTGCCACCCCTCAGTATCGGGGAGTAAGAGCA < 41bp 1 0.620476019922093 1 0.856720328330994 experiment 0.759047960155813 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890221 chr12:1890209 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_18128 0 0 0 0 1 chromatin 1 0.500231643921092 0.286559343338012 0.999536712157815 hm5C_site_19493 DeepMRMD:0.286559343338012;iRNA_m5C:0.999536712157815 19494 chr19 49469847 49469847 1 + A G CESC 49469831 + 49469811 49469851 41 GTTTCTAATTTCTCCCTCTTCTCTCTCAGCTCTGTGACTTC GTTTCTAATTTCTCCCTCTTCTCTCTCAGCTCTGTGGCTTC < 41bp 1 0.301485068031866 1 0.227178931236267 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469831 chr19:49469847 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_18129 0 0 1 1 1 Cytosol 1 0.500231645057815 1 0.99953670988437 hm5C_site_19494 DeepMRMD:1;iRNA_m5C:0.99953670988437 19495 chr1 110134776 110134776 1 + C T CESC 110134762 + 110134742 110134782 41 GAGATCTATACTCACTTCACCTGTGCCACAGACACGAAGAA GAGATCTATACTCACTTCACCTGTGCCACAGACATGAAGAA < 41bp 1 0.181072842175589 1 0.271376490592957 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GNAI3 ENSG00000065135 CDS Human protein_coding chr1:110134762 chr1:110134776 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_18130 0 0 1 0 0 Cytosol 1 0.500231597883847 1 0.999536804232305 hm5C_site_19495 DeepMRMD:1;iRNA_m5C:0.999536804232305 19496 chr2 47221590 47221590 1 + G A CESC 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC CATGGACAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC < 41bp 1 0.0806636242473411 1 0.0190828442573547 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221590 nonsynonymous SNV 0.998 0 6 hm5C_associated_SNPs_18131 0 0 1 0 2 Nucleus 1 0.500231643921089 1 0.999536712157823 hm5C_site_19496 DeepMRMD:1;iRNA_m5C:0.999536712157823 19497 chr2 75882227 75882227 1 + G A CESC 75882235 + 75882215 75882255 41 CCTGGTCTAAACGCTGGGAACGTCCAAATTTTAATATTAAA CCTGGTCTAAACACTGGGAACGTCCAAATTTTAATATTAAA < 41bp 1 0.0590618203494225 1 0.115106344223022 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL19 ENSG00000115364 CDS Human protein_coding chr2:75882235 chr2:75882227 nonsynonymous SNV 0.993 4 13 hm5C_associated_SNPs_18132 0 0 1 0 1 Ribosome 1 0.500231643921107 1 0.999536712157786 hm5C_site_19497 DeepMRMD:1;iRNA_m5C:0.999536712157786 19498 chr9 93624493 93624493 1 + G A CESC 93624497 + 93624477 93624517 41 CTCTCTTCTAGGATCCGAGCCAGAGACAACAACGGCTCCTA CTCTCTTCTAGGATCCAAGCCAGAGACAACAACGGCTCCTA < 41bp 1 0.576777074071209 1 0.839382171630859 experiment 0.846445851857583 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624497 chr9:93624493 nonsynonymous SNV 0.964 5 17 hm5C_associated_SNPs_18134 0 0 0 0 1 Cytosol 1 0.500231643920535 0.321235656738282 0.999536712158929 hm5C_site_19498 DeepMRMD:0.321235656738282;iRNA_m5C:0.999536712158929 19499 chr4 160264479 160264479 1 + G T CESC 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTAAGTATGATTGCAAAAGAAATTCGTCACGTTG < 41bp 1 0.567339223524324 1 0.274310290813446 experiment 0.865321552951351 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264479 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_18135 0 0 1 0 2 Cytosol 1 0.50023165640798 1 0.99953668718404 hm5C_site_19499 DeepMRMD:1;iRNA_m5C:0.99953668718404 19500 chr11 93412684 93412684 1 + G A CESC 93412674 + 93412654 93412694 41 TGGAACGGTTTGAAAAGGCACATGTACGGGGATTCCAAGCA TGGAACGGTTTGAAAAGGCACATGTACGGGAATTCCAAGCA < 41bp 1 0.220301559685363 1 0.0777067840099335 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP295 ENSG00000166004 CDS Human protein_coding chr11:93412674 chr11:93412684 nonsynonymous SNV 0.868 4 31 hm5C_associated_SNPs_18136 0 0 1 0 1 Nucleus 1 0.50023164046674 1 0.99953671906652 hm5C_site_19500 DeepMRMD:1;iRNA_m5C:0.99953671906652 19501 chr12 111744797 111744797 1 + C T CESC 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCT < 41bp 1 0.027138286716383 1 0.105343878269196 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744797 synonymous SNV . 0 41 hm5C_associated_SNPs_18137 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19501 DeepMRMD:1;iRNA_m5C:0.999536712157815 19502 chr12 111744797 111744797 1 + C T CESC 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCTT < 41bp 1 0.582087336313476 1 0.973462343215942 experiment 0.835825327373048 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744797 synonymous SNV . 0 40 hm5C_associated_SNPs_18138 0 0 0 0 1 exosome 1 0.500231643934505 0.0530753135681159 0.999536712130989 hm5C_site_19502 DeepMRMD:0.0530753135681159;iRNA_m5C:0.999536712130989 19503 chr12 111744797 111744797 1 + C T CESC 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCTTGC < 41bp 1 0.23941966402563 1 0.77613353729248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744797 synonymous SNV . 0 38 hm5C_associated_SNPs_18139 0 0 0 0 1 exosome 1 0.500231302403738 0.44773292541504 0.999537395192525 hm5C_site_19503 DeepMRMD:0.44773292541504;iRNA_m5C:0.999537395192525 19504 chr12 111744797 111744797 1 + C T CESC 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCTTGCG < 41bp 1 0.353864010330662 1 0.755725860595703 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744797 synonymous SNV . 0 37 hm5C_associated_SNPs_18140 0 0 0 0 1 exosome 1 0.500231643921086 0.488548278808594 0.999536712157827 hm5C_site_19504 DeepMRMD:0.488548278808594;iRNA_m5C:0.999536712157827 19505 chr17 1640930 1640930 1 + G A CESC 1640921 + 1640901 1640941 41 CACCAGCCTGGCCTTGCTGCCCACTAAACGCCACCTCCTGC CACCAGCCTGGCCTTGCTGCCCACTAAACACCACCTCCTGC < 41bp 1 0.0745481059364232 1 0.0645775198936462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1640921 chr17:1640930 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_18141 0 0 1 0 0 Endoplasmic reticulum 1 0.500231647805089 1 0.999536704389823 hm5C_site_19505 DeepMRMD:1;iRNA_m5C:0.999536704389823 19506 chr5 118861676 118861676 1 + G A CESC 118861674 + 118861654 118861694 41 TTTCTGCCAGGCGTGTGTTACAGCAGTTTGCAGATAATGAT TTTCTGCCAGGCGTGTGTTACAACAGTTTGCAGATAATGAT < 41bp 1 0.665499451328833 1 0.143329828977585 experiment 0.669001097342334 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118861674 chr5:118861676 synonymous SNV . 0 23 hm5C_associated_SNPs_18142 0 0 1 0 2 Cytosol 1 0.500231138357023 1 0.999537723285953 hm5C_site_19506 DeepMRMD:1;iRNA_m5C:0.999537723285953 19507 chr19 41135382 41135382 1 + G A CESC 41135396 + 41135376 41135416 41 CCTTCCGCTGCATCTGCCGCCCGGGATTCGCACCCACGCAC CCTTCCACTGCATCTGCCGCCCGGGATTCGCACCCACGCAC < 41bp 1 0.58263227163505 1 0.865509033203125 experiment 0.834735456729901 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41135396 chr19:41135382 nonsynonymous SNV 0.982 2 7 hm5C_associated_SNPs_18144 0 0 1 0 1 Cytosol 1 0.500231643921097 0.26898193359375 0.999536712157807 hm5C_site_19507 DeepMRMD:0.26898193359375;iRNA_m5C:0.999536712157807 19508 chr16 30081525 30081525 1 + G A CESC 30081505 + 30081485 30081525 41 TGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACG TGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACA < 41bp 1 0.059388506920577 1 0.0350784957408905 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081505 chr16:30081525 nonsynonymous SNV 0.978 2 41 hm5C_associated_SNPs_18145 0 0 1 0 1 Cytosol 1 0.500231612581475 1 0.99953677483705 hm5C_site_19508 DeepMRMD:1;iRNA_m5C:0.99953677483705 19509 chr16 30081525 30081525 1 + G A CESC 30081506 + 30081486 30081526 41 GGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGC GGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACAC < 41bp 1 0.0595919202653478 1 0.0503954589366913 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081506 chr16:30081525 nonsynonymous SNV 0.978 2 40 hm5C_associated_SNPs_18146 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19509 DeepMRMD:1;iRNA_m5C:0.999536712157815 19510 chr16 30081525 30081525 1 + G A CESC 30081507 + 30081487 30081527 41 GGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCC GGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACACC < 41bp 1 0.178440886133824 1 0.0756585001945496 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081507 chr16:30081525 nonsynonymous SNV 0.978 2 39 hm5C_associated_SNPs_18147 0 0 1 0 1 Cytosol 1 0.500231558593803 1 0.999536882812393 hm5C_site_19510 DeepMRMD:1;iRNA_m5C:0.999536882812393 19511 chr16 30081525 30081525 1 + G A CESC 30081509 + 30081489 30081529 41 GCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCCTA GCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACACCTA < 41bp 1 0.433478674906766 1 0.192023694515228 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081509 chr16:30081525 nonsynonymous SNV 0.978 2 37 hm5C_associated_SNPs_18148 0 0 1 0 1 Cytosol 1 0.500231643919483 1 0.999536712161034 hm5C_site_19511 DeepMRMD:1;iRNA_m5C:0.999536712161034 19512 chr7 133682272 133682272 1 + C T CESC 133682278 + 133682258 133682298 41 TCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTCAG TCAAGACAGCCACATGAACACGGATCTCCCCCCAGTGTCAG < 41bp 1 0.408394658097704 1 0.276822656393051 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682278 chr7:133682272 nonsynonymous SNV 0.031 0 15 hm5C_associated_SNPs_18149 0 0 1 0 1 Nucleus 1 0.500231643929215 1 0.99953671214157 hm5C_site_19512 DeepMRMD:1;iRNA_m5C:0.99953671214157 19513 chr19 45851953 45851953 1 + C T CESC 45851950 + 45851930 45851970 41 CAGACCTTCTCCATGATGCCCTGCAGATCCGGGAGCAGACG CAGACCTTCTCCATGATGCCCTGTAGATCCGGGAGCAGACG < 41bp 1 0.306934925553913 1 0.0862761437892914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851950 chr19:45851953 stopgain 1.000 0 24 hm5C_associated_SNPs_18152 0 0 0 0 2 nucleolus 1 0.500231643921051 1 0.999536712157898 hm5C_site_19513 DeepMRMD:1;iRNA_m5C:0.999536712157898 19514 chr19 11548779 11548779 1 + C T CESC 11548761 + 11548741 11548781 41 GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAACGA GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAATGA < 41bp 1 0.314328676767025 1 0.086852490901947 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11548761 chr19:11548779 synonymous SNV . 0 39 hm5C_associated_SNPs_18153 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19514 DeepMRMD:1;iRNA_m5C:0.999536712157815 19515 chr3 124456792 124456792 1 + C T CESC 124456785 + 124456765 124456805 41 GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGCC GCACCCAAAGAACTCAGCTTCGGTGCATGTGCAGAGCTGCC < 41bp 1 0.365381635657857 1 0.75896692276001 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UMPS ENSG00000114491 CDS Human protein_coding chr3:124456785 chr3:124456792 nonsynonymous SNV 0.628 4 28 hm5C_associated_SNPs_18154 0 0 1 0 1 Ribosome 1 0.500231643921083 0.48206615447998 0.999536712157835 hm5C_site_19515 DeepMRMD:0.48206615447998;iRNA_m5C:0.999536712157835 19516 chr19 8503333 8503333 1 + G A CESC 8503319 + 8503299 8503339 41 TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCGCCTGAA TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCACCTGAA < 41bp 1 0.397580787388643 1 0.124432057142258 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503319 chr19:8503333 nonsynonymous SNV 0.993 0 35 hm5C_associated_SNPs_18156 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19516 DeepMRMD:1;iRNA_m5C:0.999536712157815 19517 chr16 88804736 88804736 1 + G A CESC 88804748 - 88804728 88804768 41 CCCATCAGCACTCGGGGCTTCAGCAGACTCTGCGTCGCGGT CCCATCAGCACTCGGGGCTTCAGCAGACTCTGTGTCGCGGT < 41bp 1 0.592304716612292 1 0.417135834693909 experiment 0.815390566775416 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804748 chr16:88804736 synonymous SNV . 0 33 hm5C_associated_SNPs_18157 0 0 1 0 0 Endoplasmic reticulum 1 0.500231633378691 1 0.999536733242618 hm5C_site_19517 DeepMRMD:1;iRNA_m5C:0.999536733242618 19518 chr22 41322434 41322434 1 + T C CESC 41322444 + 41322424 41322464 41 CAGCCAGGCTTCTTGACCTTCACTGCGGCCCACATGCACCT CAGCCAGGCTCCTTGACCTTCACTGCGGCCCACATGCACCT < 41bp 1 0.326157060559291 1 0.252818197011948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient XPNPEP3 ENSG00000196236 CDS Human protein_coding chr22:41322444 chr22:41322434 nonsynonymous SNV 0.061 1 11 hm5C_associated_SNPs_18158 0 0 1 0 1 Ribosome 1 0.500231607620058 1 0.999536784759884 hm5C_site_19518 DeepMRMD:1;iRNA_m5C:0.999536784759884 19519 chr5 122161787 122161787 1 + G A CESC 122161793 + 122161773 122161813 41 GGCAGAAATGGGAAGATGCTCAAATTACTTTGCTCAAAAAA GGCAGAAATGGGAAAATGCTCAAATTACTTTGCTCAAAAAA < 41bp 1 0.396119581417586 1 0.34554785490036 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122161793 chr5:122161787 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_18159 0 0 1 0 0 Ribosome 1 0.500231643921538 1 0.999536712156924 hm5C_site_19519 DeepMRMD:1;iRNA_m5C:0.999536712156924 19520 chr3 130672712 130672712 1 + G A CESC 130672711 + 130672691 130672731 41 CAGCTTGACAGGTGAGACAACGCCTTGTTCTAAGGTGACAG CAGCTTGACAGGTGAGACAACACCTTGTTCTAAGGTGACAG < 41bp 1 0.60910026858976 1 0.050048291683197 experiment 0.78179946282048 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130672711 chr3:130672712 synonymous SNV . 0 22 hm5C_associated_SNPs_18160 0 0 1 0 1 Ribosome 1 0.500227414238158 1 0.999545171523685 hm5C_site_19520 DeepMRMD:1;iRNA_m5C:0.999545171523685 19521 chr2 241513639 241513639 1 + G A CESC 241513620 + 241513600 241513640 41 ATCTCCTCCATCCTGGAGAGCGATGAGTTCCTGGTCATCGA ATCTCCTCCATCCTGGAGAGCGATGAGTTCCTGGTCATCAA < 41bp 1 0.202116868967615 1 0.0891779363155365 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241513620 chr2:241513639 nonsynonymous SNV 0.029 3 40 hm5C_associated_SNPs_18161 0 0 0 0 0 chromatin 1 0.500231643921087 1 0.999536712157825 hm5C_site_19521 DeepMRMD:1;iRNA_m5C:0.999536712157825 19522 chr1 183083802 183083802 1 + C T CESC 183083799 + 183083779 183083819 41 TGTGAGAGGTGCCGAGAGAACTTCTTCCGCCTTGGCAACAA TGTGAGAGGTGCCGAGAGAACTTTTTCCGCCTTGGCAACAA < 41bp 1 0.229456653548684 1 0.100185662508011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183083799 chr1:183083802 synonymous SNV . 0 24 hm5C_associated_SNPs_18162 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_19522 DeepMRMD:1;iRNA_m5C:0.999536712157811 19523 chr1 36028876 36028876 1 + C T CESC 36028874 + 36028854 36028894 41 GATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGT GATCCTGATCAAGGAAGGGGCCTCCTCGCTTCTGTGCAAGT < 41bp 1 0.0200333372977342 1 0.0964355170726776 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028874 chr1:36028876 nonsynonymous SNV 0.984 1 23 hm5C_associated_SNPs_18163 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643916089 1 0.999536712167822 hm5C_site_19523 DeepMRMD:1;iRNA_m5C:0.999536712167822 19524 chr9 131830109 131830109 1 + G A CESC 131830119 + 131830099 131830139 41 CCTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG CCTGCGGCCCAAGACCTGGGCCACAACACGGCTGGAGCTGG < 41bp 1 0.19343514590606 1 0.0623084008693695 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830119 chr9:131830109 nonsynonymous SNV 0.992 3 11 hm5C_associated_SNPs_18164 0 0 1 0 2 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_19524 DeepMRMD:1;iRNA_m5C:0.999536712157814 19525 chr9 131830109 131830109 1 + G A CESC 131830120 + 131830100 131830140 41 CTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA CTGCGGCCCAAGACCTGGGCCACAACACGGCTGGAGCTGGA < 41bp 1 0.346335934875702 1 0.134534537792206 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830120 chr9:131830109 nonsynonymous SNV 0.992 3 10 hm5C_associated_SNPs_18165 0 0 1 0 2 unknown 1 0.500231643921235 1 0.999536712157531 hm5C_site_19525 DeepMRMD:1;iRNA_m5C:0.999536712157531 19526 chr5 176720870 176720870 1 + C T CESC 176720884 + 176720864 176720904 41 CATCTGCGGGAAGGAAGCAGCCTCCTTCTGTGAGATGTGCC CATCTGTGGGAAGGAAGCAGCCTCCTTCTGTGAGATGTGCC < 41bp 1 0.0194042175836021 1 0.128821194171906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176720884 chr5:176720870 synonymous SNV . 0 7 hm5C_associated_SNPs_18166 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19526 DeepMRMD:1;iRNA_m5C:0.999536712157815 19527 chr1 161138793 161138793 1 + A C CESC 161138789 + 161138769 161138809 41 TGCTTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCAC TGCTTCCTCTGCAGGGCGGACCCCCCAGCCAGACTCAGCAC < 41bp 1 0.0722066265913075 1 0.0313831567764282 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138789 chr1:161138793 synonymous SNV . 0 25 hm5C_associated_SNPs_18167 0 0 1 0 1 Cytosol 1 0.500231643925254 1 0.999536712149491 hm5C_site_19527 DeepMRMD:1;iRNA_m5C:0.999536712149491 19528 chr1 161138793 161138793 1 + A C CESC 161138790 + 161138770 161138810 41 GCTTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCACT GCTTCCTCTGCAGGGCGGACCCCCCAGCCAGACTCAGCACT < 41bp 1 0.0704472170081651 1 0.135369300842285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138790 chr1:161138793 synonymous SNV . 0 24 hm5C_associated_SNPs_18168 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_19528 DeepMRMD:1;iRNA_m5C:0.999536712157814 19529 chr1 161138793 161138793 1 + A C CESC 161138791 + 161138771 161138811 41 CTTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCACTC CTTCCTCTGCAGGGCGGACCCCCCAGCCAGACTCAGCACTC < 41bp 1 0.681828466383487 1 0.403098791837692 experiment 0.636343067233025 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138791 chr1:161138793 synonymous SNV . 0 23 hm5C_associated_SNPs_18169 0 0 1 0 1 Cytosol 1 0.500231643921086 1 0.999536712157828 hm5C_site_19529 DeepMRMD:1;iRNA_m5C:0.999536712157828 19530 chr1 161138793 161138793 1 + A C CESC 161138792 + 161138772 161138812 41 TTCCTCTGCAGGGCGGACCCCACAGCCAGACTCAGCACTCA TTCCTCTGCAGGGCGGACCCCCCAGCCAGACTCAGCACTCA < 41bp 1 0.187759579528808 1 0.339924395084381 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPOX ENSG00000143224 CDS Human protein_coding chr1:161138792 chr1:161138793 synonymous SNV . 0 22 hm5C_associated_SNPs_18170 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19530 DeepMRMD:1;iRNA_m5C:0.999536712157815 19531 chr19 36640712 36640712 1 + C T CESC 36640710 + 36640690 36640730 41 TCACTCTCCACCCTCCTCTCCCCAGTGGCTGCAGCTGACTA TCACTCTCCACCCTCCTCTCCCTAGTGGCTGCAGCTGACTA < 41bp 1 0.0846552337790453 1 0.0865050554275513 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36640710 chr19:36640712 synonymous SNV . 0 23 hm5C_associated_SNPs_18171 0 0 1 0 0 Ribosome 1 0.500231657634224 1 0.999536684731552 hm5C_site_19531 DeepMRMD:1;iRNA_m5C:0.999536684731552 19532 chr19 36640712 36640712 1 + C T CESC 36640711 + 36640691 36640731 41 CACTCTCCACCCTCCTCTCCCCAGTGGCTGCAGCTGACTAT CACTCTCCACCCTCCTCTCCCTAGTGGCTGCAGCTGACTAT < 41bp 1 0.625733913760599 1 0.162849277257919 experiment 0.748532172478802 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36640711 chr19:36640712 synonymous SNV . 0 22 hm5C_associated_SNPs_18172 0 0 1 0 0 Ribosome 1 0.500231643916977 1 0.999536712166045 hm5C_site_19532 DeepMRMD:1;iRNA_m5C:0.999536712166045 19533 chr3 99509753 99509753 1 + A G CESC 99509758 + 99509738 99509778 41 GCAAGGAGATGCCCCACTTGCAGTATGGCAAAGAGTATCCA GCAAGGAGATGCCCCGCTTGCAGTATGGCAAAGAGTATCCA < 41bp 1 0.669863560711733 1 0.296440184116364 experiment 0.660272878576535 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99509758 chr3:99509753 nonsynonymous SNV 0.983 2 16 hm5C_associated_SNPs_18173 0 0 1 0 0 Cytosol 1 0.500231645352169 1 0.999536709295662 hm5C_site_19533 DeepMRMD:1;iRNA_m5C:0.999536709295662 19534 chr1 110456949 110456949 1 + G A CESC 110456962 + 110456942 110456982 41 AGGTGTCGGAGTACTGTAGCCACATGATTGGGAGTGGACAC AGGTGTCAGAGTACTGTAGCCACATGATTGGGAGTGGACAC < 41bp 1 0.473646224718251 1 0.358493447303772 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110456962 chr1:110456949 synonymous SNV . 0 8 hm5C_associated_SNPs_18174 0 0 1 0 2 chromatin 1 0.500327545126861 1 0.999344909746279 hm5C_site_19534 DeepMRMD:1;iRNA_m5C:0.999344909746279 19535 chr1 17272857 17272857 1 + G A CESC 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAACCTTGC < 41bp 1 0.131779163811446 1 0.0522530972957611 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272857 nonsynonymous SNV 0.993 0 35 hm5C_associated_SNPs_18175 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19535 DeepMRMD:1;iRNA_m5C:0.999536712157815 19536 chr9 101777773 101777773 1 + G A CESC 101777755 + 101777735 101777775 41 GCTGCAACCGAAGTGTCCCTCAGTACTTTTGAGGATGAGGA GCTGCAACCGAAGTGTCCCTCAGTACTTTTGAGGATGAAGA < 41bp 1 0.238391508762954 1 0.749725818634033 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101777755 chr9:101777773 synonymous SNV . 0 39 hm5C_associated_SNPs_18176 0 0 0 0 1 Endoplasmic reticulum 1 0.50023163846295 0.500548362731934 0.999536723074099 hm5C_site_19536 DeepMRMD:0.500548362731934;iRNA_m5C:0.999536723074099 19537 chr10 75529148 75529148 1 + G A CESC 75529135 + 75529115 75529155 41 TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCAT TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCACATCCAT < 41bp 1 0.464358821910682 1 0.0707845389842987 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529135 chr10:75529148 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_18177 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19537 DeepMRMD:1;iRNA_m5C:0.999536712157815 19538 chr10 75529148 75529148 1 + G A CESC 75529138 + 75529118 75529158 41 ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT ACACCAGCTGTGCAGGGCAGCGTCGGCTCCACATCCATAAT < 41bp 1 0.444468897513628 1 0.157404214143753 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529138 chr10:75529148 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_18178 0 0 1 0 2 Nucleus 1 0.500138081429712 1 0.999723837140575 hm5C_site_19538 DeepMRMD:1;iRNA_m5C:0.999723837140575 19539 chr10 75529148 75529148 1 + G A CESC 75529146 + 75529126 75529166 41 TGTGCAGGGCAGCGTCGGCTCCGCATCCATAATCTGGCCCT TGTGCAGGGCAGCGTCGGCTCCACATCCATAATCTGGCCCT < 41bp 1 0.662398341297286 1 0.0904598236083984 experiment 0.675203317405428 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529146 chr10:75529148 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_18179 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19539 DeepMRMD:1;iRNA_m5C:0.999536712157815 19540 chr9 95599729 95599729 1 + G A CESC 95599736 + 95599716 95599756 41 CGCTGTGGTCTCCGCTGGGGCCGCTGGAGGCCCCGGGGCCT CGCTGTGGTCTCCACTGGGGCCGCTGGAGGCCCCGGGGCCT < 41bp 1 0.400466170345881 1 0.159936338663101 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599736 chr9:95599729 . . 0 14 hm5C_associated_SNPs_18180 0 0 0 0 0 unknown 1 0.500232372378937 1 0.999535255242125 hm5C_site_19540 DeepMRMD:1;iRNA_m5C:0.999535255242125 19541 chr9 95599729 95599729 1 + G A CESC 95599746 + 95599726 95599766 41 TCCGCTGGGGCCGCTGGAGGCCCCGGGGCCTGAGTTTCCGG TCCACTGGGGCCGCTGGAGGCCCCGGGGCCTGAGTTTCCGG < 41bp 1 0.600238770948734 1 0.635737776756287 experiment 0.799522458102531 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599746 chr9:95599729 . . 0 4 hm5C_associated_SNPs_18182 0 0 0 0 0 unknown 1 0.500231643824619 0.728524446487426 0.999536712350762 hm5C_site_19541 DeepMRMD:0.728524446487426;iRNA_m5C:0.999536712350762 19542 chrX 153696534 153696534 1 + C T CESC 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCGTGCTCTTCCCGGGTATCGAGGCCCACCCG < 41bp 1 0.680403201101827 1 0.869066655635834 experiment 0.639193597796346 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696534 synonymous SNV . 0 26 hm5C_associated_SNPs_18184 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921102 0.261866688728332 0.999536712157797 hm5C_site_19542 DeepMRMD:0.261866688728332;iRNA_m5C:0.999536712157797 19543 chr13 28854631 28854631 1 + G T CESC 28854635 + 28854615 28854655 41 ATTTTATACTCAATTGGATGCTGCTCAAATGAGAAATGATG ATTTTATACTCAATTGTATGCTGCTCAAATGAGAAATGATG < 41bp 1 0.183218753889851 1 0.0607247948646545 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAN3 ENSG00000152520 CDS Human protein_coding chr13:28854635 chr13:28854631 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_18186 0 0 1 0 2 Ribosome 1 0.500278266318945 1 0.999443467362111 hm5C_site_19543 DeepMRMD:1;iRNA_m5C:0.999443467362111 19544 chr20 62562222 62562222 1 + G A CESC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCAGCCTCCTCACGTGCTGCTACTGCTGCTG < 41bp 1 0.610954571641272 1 0.430665254592896 experiment 0.778090856717455 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562222 nonsynonymous SNV 0.754 1 13 hm5C_associated_SNPs_18187 0 0 1 6 1 Ribosome 1 0.500231644211037 1 0.999536711577926 hm5C_site_19544 DeepMRMD:1;iRNA_m5C:0.999536711577926 19545 chr18 9525743 9525743 1 + G A CESC 9525724 + 9525704 9525744 41 CATTTGCTTTCTAGGAGTTTCTTTTGAATTGTTTACATCGA CATTTGCTTTCTAGGAGTTTCTTTTGAATTGTTTACATCAA < 41bp 1 0.0622567612054042 1 0.284449994564056 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9525724 chr18:9525743 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_18188 0 0 1 0 1 Ribosome 1 0.500231641648268 1 0.999536716703463 hm5C_site_19545 DeepMRMD:1;iRNA_m5C:0.999536716703463 19546 chr16 5123019 5123019 1 + G T CESC 5123009 + 5122989 5123029 41 AATTCAGATTGTGGGGTTGACAGAACTTCAGAGTCTTGCAG AATTCAGATTGTGGGGTTGACAGAACTTCATAGTCTTGCAG < 41bp 1 0.684791934860505 1 0.373697221279144 experiment 0.630416130278989 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5123009 chr16:5123019 nonsynonymous SNV 0.078 1 31 hm5C_associated_SNPs_18189 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19546 DeepMRMD:1;iRNA_m5C:0.999536712157815 19547 chr10 72326419 72326419 1 + C T CESC 72326417 + 72326397 72326437 41 AGCGGGGAGGACCAGCCCTTCTCCAGGCTGCGCTACCGGTG AGCGGGGAGGACCAGCCCTTCTTCAGGCTGCGCTACCGGTG < 41bp 1 0.548413186490362 1 0.544948160648346 experiment 0.903173627019276 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72326417 chr10:72326419 nonsynonymous SNV 0.974 2 23 hm5C_associated_SNPs_18190 0 0 0 0 1 Ribosome 1 0.500231643921092 0.910103678703308 0.999536712157815 hm5C_site_19547 DeepMRMD:0.910103678703308;iRNA_m5C:0.999536712157815 19548 chr21 46624585 46624585 1 + T C CESC 46624567 + 46624547 46624587 41 GCAGCCTTTACCACGGGGACCACCTTTCCAGGGCCATGTAC GCAGCCTTTACCACGGGGACCACCTTTCCAGGGCCATGCAC < 41bp 1 0.369733471513309 1 0.0747115314006805 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46624567 chr21:46624585 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_18191 0 0 0 1 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19548 DeepMRMD:1;iRNA_m5C:0.999536712157815 19549 chr18 21474930 21474930 1 + C T CESC 21474924 + 21474904 21474944 41 ACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT ACCTGGCCACCATGGGCGAGCAGCTCTGCCTGGTCAAGTCT < 41bp 1 0.199358178184979 1 0.118142873048782 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21474924 chr18:21474930 nonsynonymous SNV 0.975 2 27 hm5C_associated_SNPs_18192 0 0 0 0 1 Cytosol 1 0.500231643921066 1 0.999536712157868 hm5C_site_19549 DeepMRMD:1;iRNA_m5C:0.999536712157868 19550 chr17 77758700 77758700 1 + C T CESC 77758688 + 77758668 77758708 41 CCGCCCAGCACTGGACAGAACCCGTCAGTGTCCGTTCAGAC CCGCCCAGCACTGGACAGAACCCGTCAGTGTCTGTTCAGAC < 41bp 1 0.237714276511803 1 0.0494611263275146 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77758688 chr17:77758700 synonymous SNV . 0 33 hm5C_associated_SNPs_18193 0 0 1 0 0 chromatin 1 0.50023164394482 1 0.99953671211036 hm5C_site_19550 DeepMRMD:1;iRNA_m5C:0.99953671211036 19551 chr17 77758700 77758700 1 + C T CESC 77758689 + 77758669 77758709 41 CGCCCAGCACTGGACAGAACCCGTCAGTGTCCGTTCAGACC CGCCCAGCACTGGACAGAACCCGTCAGTGTCTGTTCAGACC < 41bp 1 0.0773550582849054 1 0.172886550426483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77758689 chr17:77758700 synonymous SNV . 0 32 hm5C_associated_SNPs_18194 0 0 1 0 0 chromatin 1 0.500231440745579 1 0.999537118508842 hm5C_site_19551 DeepMRMD:1;iRNA_m5C:0.999537118508842 19552 chr6 138576706 138576706 1 + G A CESC 138576703 + 138576683 138576723 41 CGTCTCCGGGAGTGTCTGACCACGGCCGAGGATCAGGCTGC CGTCTCCGGGAGTGTCTGACCACAGCCGAGGATCAGGCTGC < 41bp 1 0.535571018712248 1 0.596168637275696 experiment 0.928857962575504 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 CDS Human protein_coding chr6:138576703 chr6:138576706 nonsynonymous SNV 0.520 4 24 hm5C_associated_SNPs_18196 0 0 1 0 0 Nucleus 1 0.5002316439209 0.807662725448608 0.9995367121582 hm5C_site_19552 DeepMRMD:0.807662725448608;iRNA_m5C:0.9995367121582 19553 chr11 61584165 61584165 1 + C T CESC 61584155 + 61584135 61584175 41 CTCGCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGT CTCGCACCCTGAGCGCTGGGCCACCTCGTCTCAGGTGAAGT < 41bp 1 0.0255704839009358 1 0.0794890820980072 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584155 chr11:61584165 stopgain 0.984 0 31 hm5C_associated_SNPs_18197 0 0 0 0 1 unknown 1 0.500238817402274 1 0.999522365195451 hm5C_site_19553 DeepMRMD:1;iRNA_m5C:0.999522365195451 19554 chr11 61584165 61584165 1 + C T CESC 61584156 + 61584136 61584176 41 TCGCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTA TCGCACCCTGAGCGCTGGGCCACCTCGTCTCAGGTGAAGTA < 41bp 1 0.186920652665544 1 0.086810439825058 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584156 chr11:61584165 stopgain 0.984 0 30 hm5C_associated_SNPs_18198 0 0 0 0 1 unknown 1 0.499294560262898 1 1 hm5C_site_19554 DeepMRMD:1;iRNA_m5C:1 19555 chr11 61584165 61584165 1 + C T CESC 61584158 + 61584138 61584178 41 GCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGC GCACCCTGAGCGCTGGGCCACCTCGTCTCAGGTGAAGTAGC < 41bp 1 0.0825866715090332 1 0.0400795340538025 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584158 chr11:61584165 stopgain 0.984 0 28 hm5C_associated_SNPs_18199 0 0 0 0 1 unknown 1 0.499968608676704 1 1 hm5C_site_19555 DeepMRMD:1;iRNA_m5C:1 19556 chr11 61584165 61584165 1 + C T CESC 61584159 + 61584139 61584179 41 CACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCG CACCCTGAGCGCTGGGCCACCTCGTCTCAGGTGAAGTAGCG < 41bp 1 0.478231508587636 1 0.217941403388977 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584159 chr11:61584165 stopgain 0.984 0 27 hm5C_associated_SNPs_18200 0 0 0 0 1 unknown 1 0.500231643926386 1 0.999536712147229 hm5C_site_19556 DeepMRMD:1;iRNA_m5C:0.999536712147229 19557 chr11 61584165 61584165 1 + C T CESC 61584161 + 61584141 61584181 41 CCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCG CCCTGAGCGCTGGGCCACCTCGTCTCAGGTGAAGTAGCGCG < 41bp 1 0.348865613499861 1 0.395815461874008 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584161 chr11:61584165 stopgain 0.984 0 25 hm5C_associated_SNPs_18201 0 0 0 0 1 unknown 1 0.50023164392026 1 0.999536712159481 hm5C_site_19557 DeepMRMD:1;iRNA_m5C:0.999536712159481 19558 chr11 61584165 61584165 1 + C T CESC 61584164 + 61584144 61584184 41 TGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGG TGAGCGCTGGGCCACCTCGTCTCAGGTGAAGTAGCGCGGGG < 41bp 1 0.693257800944591 1 0.740859925746918 experiment 0.613484398110817 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584164 chr11:61584165 stopgain 0.984 0 22 hm5C_associated_SNPs_18202 0 0 0 0 1 unknown 1 0.500231643921093 0.518280148506164 0.999536712157815 hm5C_site_19558 DeepMRMD:0.518280148506164;iRNA_m5C:0.999536712157815 19559 chr21 47983779 47983779 1 + C T CESC 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG CCTGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG < 41bp 1 0.35250351268666 1 0.320117086172104 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983779 synonymous SNV . 0 3 hm5C_associated_SNPs_18205 0 0 1 0 2 Cytosol 1 0.500231502277104 1 0.999536995445793 hm5C_site_19559 DeepMRMD:1;iRNA_m5C:0.999536995445793 19560 chr20 43530427 43530427 1 + C T CESC 43530409 + 43530389 43530429 41 AGAGGAATGAGAAGAAGCAGCAGATGGGCAAAGAGTACCGT AGAGGAATGAGAAGAAGCAGCAGATGGGCAAAGAGTACTGT < 41bp 1 0.585800781498548 1 0.473661184310913 experiment 0.828398437002904 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout YWHAB ENSG00000166913 CDS Human protein_coding chr20:43530409 chr20:43530427 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_18206 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_19560 DeepMRMD:1;iRNA_m5C:0.999536712157815 19561 chr11 66627399 66627399 1 + C T CESC 66627381 + 66627361 66627401 41 GTGGCCTTGCTGGTTCGGGGCCGGGGGGCCGGAAATGGCCG GTGGCCTTGCTGGTTCGGGGCCGGGGGGCCGGAAATGGTCG < 41bp 1 0.614211650900686 1 0.710040926933289 experiment 0.771576698198628 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627381 chr11:66627399 synonymous SNV . 0 39 hm5C_associated_SNPs_18207 0 0 0 0 0 Ribosome 1 0.500231643921091 0.579918146133422 0.999536712157817 hm5C_site_19561 DeepMRMD:0.579918146133422;iRNA_m5C:0.999536712157817 19562 chr15 57545637 57545637 1 + C T CESC 57545632 + 57545612 57545652 41 CAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC CAATTCAAACTATGGAGGATCAAGCTTTGTTGCAAGCAGTC < 41bp 1 0.270903540386392 1 0.409963518381119 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57545632 chr15:57545637 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_18208 0 0 1 0 1 Cytosol 1 0.500169102308312 1 0.999661795383376 hm5C_site_19562 DeepMRMD:1;iRNA_m5C:0.999661795383376 19563 chr3 62229570 62229570 1 + C T CESC 62229569 + 62229549 62229589 41 GTATCCCTATTATTCCTATTCCGGGTAAGTAAGACACTGCT GTATCCCTATTATTCCTATTCTGGGTAAGTAAGACACTGCT < 41bp 1 0.41779269593649 1 0.85838782787323 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62229569 chr3:62229570 nonsynonymous SNV 0.983 2 22 hm5C_associated_SNPs_18209 0 0 1 0 2 Ribosome 1 0.50023164392109 0.28322434425354 0.999536712157819 hm5C_site_19563 DeepMRMD:0.28322434425354;iRNA_m5C:0.999536712157819 19564 chr16 731835 731835 1 + C T CESC 731817 + 731797 731837 41 CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGATGA < 41bp 1 0.349380601510293 1 0.119238704442978 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STUB1 ENSG00000103266 CDS Human protein_coding chr16:731817 chr16:731835 synonymous SNV . 0 39 hm5C_associated_SNPs_18210 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643917392 1 0.999536712165216 hm5C_site_19564 DeepMRMD:1;iRNA_m5C:0.999536712165216 19565 chr9 36633156 36633156 1 + C T CESC 36633167 + 36633147 36633187 41 TGGATCATGCAAGATTACAACTATCCTGTTGAGTGGCAAAG TGGATCATGTAAGATTACAACTATCCTGTTGAGTGGCAAAG < 41bp 1 0.114169914258364 1 0.0604482889175415 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MELK ENSG00000165304 CDS Human protein_coding chr9:36633167 chr9:36633156 stopgain 1.000 1 10 hm5C_associated_SNPs_18211 0 0 1 0 2 chromatin 1 0.500236554552212 1 0.999526890895575 hm5C_site_19565 DeepMRMD:1;iRNA_m5C:0.999526890895575 19566 chr10 101515387 101515387 1 + C T CESC 101515406 + 101515386 101515426 41 TCATCTGTTGCCATGGGAGCCTCACTTTCTTGCTCAGAATA TTATCTGTTGCCATGGGAGCCTCACTTTCTTGCTCAGAATA < 41bp 1 0.272461339611126 1 0.126042127609253 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515406 chr10:101515387 nonsynonymous SNV 0.992 0 2 hm5C_associated_SNPs_18212 0 0 1 0 1 Ribosome 1 0.500231644006004 1 0.999536711987992 hm5C_site_19566 DeepMRMD:1;iRNA_m5C:0.999536711987992 19567 chr1 38484942 38484942 1 + G A CESC 38484930 + 38484910 38484950 41 TGTCTTGAATTTTAGTTGAACAGTTTGATGTCGCAACTCAC TGTCTTGAATTTTAGTTGAACAGTTTGATGTCACAACTCAC < 41bp 1 0.212517797885004 1 0.0604843497276306 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP11 ENSG00000183520 CDS Human protein_coding chr1:38484930 chr1:38484942 nonsynonymous SNV 0.973 4 33 hm5C_associated_SNPs_18213 0 0 1 0 1 Ribosome 1 0.50023308676303 1 0.99953382647394 hm5C_site_19567 DeepMRMD:1;iRNA_m5C:0.99953382647394 19568 chr20 62305397 62305397 1 + G A CESC 62305411 + 62305391 62305431 41 GGCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCGG GGCAGCACAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCGG < 41bp 1 0.0943920883664929 1 0.396569281816483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62305411 chr20:62305397 synonymous SNV . 0 7 hm5C_associated_SNPs_18214 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19568 DeepMRMD:1;iRNA_m5C:0.999536712157815 19569 chr20 62305397 62305397 1 + G A CESC 62305412 + 62305392 62305432 41 GCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCGGA GCAGCACAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCGGA < 41bp 1 0.114574226987395 1 0.100426495075226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62305412 chr20:62305397 synonymous SNV . 0 6 hm5C_associated_SNPs_18215 0 0 1 0 0 chromatin 1 0.500254303271234 1 0.999491393457532 hm5C_site_19569 DeepMRMD:1;iRNA_m5C:0.999491393457532 19570 chr11 5624571 5624571 1 + G A CESC 5624588 + 5624568 5624608 41 TACGAGAAGAGGTGACCTGCCCTATCTGCCTGGAGCTCCTA TACAAGAAGAGGTGACCTGCCCTATCTGCCTGGAGCTCCTA < 41bp 1 0.11379478365575 1 0.0897882878780365 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5624588 chr11:5624571 nonsynonymous SNV 0.819 1 4 hm5C_associated_SNPs_18217 0 0 0 0 1 unknown 1 0.500231644086893 1 0.999536711826213 hm5C_site_19570 DeepMRMD:1;iRNA_m5C:0.999536711826213 19571 chrX 129629796 129629796 1 + G A CESC 129629789 + 129629769 129629809 41 CTTCACTCTTACGTGCACCTCAACGCCGATGAGCTGGAAGC CTTCACTCTTACGTGCACCTCAACGCCAATGAGCTGGAAGC < 41bp 1 0.558439531777281 1 0.295692682266235 experiment 0.883120936445439 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM45BP ENSG00000221930 ncRNA_exonic Human transcribed_processed_pseudogene chrX:129629789 chrX:129629796 . . 0 28 hm5C_associated_SNPs_18218 0 0 0 0 0 unknown 1 0.500231643920786 1 0.999536712158427 hm5C_site_19571 DeepMRMD:1;iRNA_m5C:0.999536712158427 19572 chr7 100454684 100454684 1 + G A CESC 100454688 + 100454668 100454708 41 CAGTTTTGTGGCTGTGGGGCCGAGGGACATCCGCTTGACTC CAGTTTTGTGGCTGTGAGGCCGAGGGACATCCGCTTGACTC < 41bp 1 0.664422551445316 1 0.84700882434845 experiment 0.671154897109369 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC12A9 ENSG00000146828 CDS Human protein_coding chr7:100454688 chr7:100454684 nonsynonymous SNV 0.874 1 17 hm5C_associated_SNPs_18220 0 0 0 0 0 Cytosol 1 0.500230610421925 0.3059823513031 0.999538779156151 hm5C_site_19572 DeepMRMD:0.3059823513031;iRNA_m5C:0.999538779156151 19573 chr7 100454684 100454684 1 + G A CESC 100454701 + 100454681 100454721 41 GTGGGGCCGAGGGACATCCGCTTGACTCCTAGGCCTGGCCC GTGAGGCCGAGGGACATCCGCTTGACTCCTAGGCCTGGCCC < 41bp 1 0.671192515221181 1 0.318792164325714 experiment 0.657614969557637 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC12A9 ENSG00000146828 CDS Human protein_coding chr7:100454701 chr7:100454684 nonsynonymous SNV 0.874 1 4 hm5C_associated_SNPs_18221 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19573 DeepMRMD:1;iRNA_m5C:0.999536712157815 19574 chr11 94554930 94554930 1 + C T CESC 94554949 + 94554929 94554969 41 ACCGGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT ATCGGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT < 41bp 1 0.302720137067139 1 0.0708515644073486 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94554949 chr11:94554930 synonymous SNV . 0 2 hm5C_associated_SNPs_18222 0 0 1 0 1 chromatin 1 0.500231643921259 1 0.999536712157483 hm5C_site_19574 DeepMRMD:1;iRNA_m5C:0.999536712157483 19575 chr7 158672563 158672563 1 + A G CESC 158672551 + 158672531 158672571 41 AAAAGTAATTCATTCTCTGACAAAGGGGAAGAAAGACATAA AAAAGTAATTCATTCTCTGACAAAGGGGAAGAGAGACATAA < 41bp 1 0.243672953875436 1 0.518078804016113 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR60 ENSG00000126870 CDS Human protein_coding chr7:158672551 chr7:158672563 synonymous SNV . 0 33 hm5C_associated_SNPs_18223 0 0 1 0 0 Nucleus 1 0.500231643872124 0.963842391967774 0.999536712255751 hm5C_site_19575 DeepMRMD:0.963842391967774;iRNA_m5C:0.999536712255751 19576 chr17 7466578 7466578 1 + G A CESC 7466589 + 7466569 7466609 41 CAGCCAGACGCCTCCCTGTCCCCCGACCCTCTTTTGATGCC CAGCCAGACACCTCCCTGTCCCCCGACCCTCTTTTGATGCC < 41bp 1 0.265802718929349 1 0.051455169916153 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SENP3 ENSG00000161956 CDS Human protein_coding chr17:7466589 chr17:7466578 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_18224 0 0 1 0 0 Cytosol 1 0.500231641088847 1 0.999536717822306 hm5C_site_19576 DeepMRMD:1;iRNA_m5C:0.999536717822306 19577 chr2 157407249 157407249 1 + G A CESC 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGATTAT < 41bp 1 0.144308249846649 1 0.275337010622025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407249 nonsynonymous SNV 0.983 1 37 hm5C_associated_SNPs_18225 0 0 1 3 1 Endoplasmic reticulum 1 0.500232047407439 1 0.999535905185122 hm5C_site_19577 DeepMRMD:1;iRNA_m5C:0.999535905185122 19578 chr17 19284024 19284024 1 + C T CESC 19284038 + 19284018 19284058 41 CTGCTGCGGGGCCTGAAGTACATGCACTCGGCTCAGGTCAT CTGCTGTGGGGCCTGAAGTACATGCACTCGGCTCAGGTCAT < 41bp 1 0.143411028205094 1 0.0910228788852692 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK7 ENSG00000166484 CDS Human protein_coding chr17:19284038 chr17:19284024 nonsynonymous SNV 0.997 4 7 hm5C_associated_SNPs_18226 0 0 0 0 0 exosome 1 0.500231643927291 1 0.999536712145418 hm5C_site_19578 DeepMRMD:1;iRNA_m5C:0.999536712145418 19579 chr1 161132171 161132171 1 + C A CESC 161132159 + 161132139 161132179 41 AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGCTCACTGAA AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGATCACTGAA < 41bp 1 0.420179011902257 1 0.685475170612335 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161132159 chr1:161132171 nonsynonymous SNV 0.989 1 33 hm5C_associated_SNPs_18227 0 0 1 0 1 Cytosol 1 0.500231643921083 0.62904965877533 0.999536712157834 hm5C_site_19579 DeepMRMD:0.62904965877533;iRNA_m5C:0.999536712157834 19580 chr1 114514527 114514527 1 + G A CESC 114514546 + 114514526 114514566 41 CGAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA CAAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA < 41bp 1 0.532080432561213 1 0.688127517700195 experiment 0.935839134877574 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114514546 chr1:114514527 nonsynonymous SNV 0.915 4 2 hm5C_associated_SNPs_18228 0 0 1 0 2 Cytosol 1 0.500231643921092 0.62374496459961 0.999536712157815 hm5C_site_19580 DeepMRMD:0.62374496459961;iRNA_m5C:0.999536712157815 19581 chr3 136665007 136665007 1 + G A CESC 136664991 + 136664971 136665011 41 GTTTGGAACCATCACCTCCACAGTGTGATTACATTAGGCCT GTTTGGAACCATCACCTCCACAGTGTGATTACATTAAGCCT < 41bp 1 0.563899874578936 1 0.109717518091202 experiment 0.872200250842129 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCK1 ENSG00000158092 CDS Human protein_coding chr3:136664991 chr3:136665007 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_18229 0 0 1 0 0 Ribosome 1 0.500231643921525 1 0.999536712156951 hm5C_site_19581 DeepMRMD:1;iRNA_m5C:0.999536712156951 19582 chr9 134350191 134350191 1 + G A CESC 134350189 + 134350169 134350209 41 GGTGTTGAGCGGGAGACACCCCGGGAGGGGACGGCCTTTAA GGTGTTGAGCGGGAGACACCCCAGGAGGGGACGGCCTTTAA < 41bp 1 0.51484530292426 1 0.735967040061951 experiment 0.97030939415148 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134350189 chr9:134350191 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_18230 0 0 1 0 0 Nucleus 1 0.500231643920812 0.528065919876098 0.999536712158375 hm5C_site_19582 DeepMRMD:0.528065919876098;iRNA_m5C:0.999536712158375 19583 chr15 89172590 89172590 1 + G A CESC 89172606 + 89172586 89172626 41 CCCGGCCTCCACACCCGGGCCCGGGTCTCTCTAAAGGACCT CCCGACCTCCACACCCGGGCCCGGGTCTCTCTAAAGGACCT < 41bp 1 0.375734203704407 1 0.234626233577728 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AEN ENSG00000181026 CDS Human protein_coding chr15:89172606 chr15:89172590 nonsynonymous SNV 0.003 0 5 hm5C_associated_SNPs_18231 0 0 1 0 1 Ribosome 1 0.500231643921095 1 0.999536712157811 hm5C_site_19583 DeepMRMD:1;iRNA_m5C:0.999536712157811 19584 chr2 74687001 74687001 1 + G A CESC 74687004 + 74686984 74687024 41 TCCTTGCCTCTTGCAGGGTTCTGGCTGCTCTGGACTGTCCT TCCTTGCCTCTTGCAGGATTCTGGCTGCTCTGGACTGTCCT < 41bp 1 0.426043142451006 1 0.749704360961914 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WBP1 ENSG00000239779 CDS Human protein_coding chr2:74687004 chr2:74687001 stopgain 0.999 0 18 hm5C_associated_SNPs_18232 0 0 0 0 0 cytosol 1 0.500231645506348 0.500591278076172 0.999536708987304 hm5C_site_19584 DeepMRMD:0.500591278076172;iRNA_m5C:0.999536708987304 19585 chr7 138944052 138944052 1 + C T CESC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGTGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.48847045831158 1 0.653716802597046 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944052 nonsynonymous SNV 0.996 4 15 hm5C_associated_SNPs_18234 0 0 1 0 2 Cytosol 1 0.500231643921092 0.692566394805908 0.999536712157815 hm5C_site_19585 DeepMRMD:0.692566394805908;iRNA_m5C:0.999536712157815 19586 chr10 70738628 70738628 1 + A G CESC 70738609 + 70738589 70738629 41 TGTTGTAAGGGTTTTGTGACCATGATCTTGCAGTGCTCAAT TGTTGTAAGGGTTTTGTGACCATGATCTTGCAGTGCTCAGT < 41bp 1 0.580471865009779 1 0.109519600868225 experiment 0.839056269980441 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70738609 chr10:70738628 nonsynonymous SNV 0.992 0 40 hm5C_associated_SNPs_18235 0 0 1 0 0 Nucleus 1 0.500230868816575 1 0.999538262366851 hm5C_site_19586 DeepMRMD:1;iRNA_m5C:0.999538262366851 19587 chr17 78082385 78082385 1 + G A CESC 78082382 + 78082362 78082402 41 ACCCGCCAGGTGGTGGAGAACATGACCAGGGCCCACTTCCC ACCCGCCAGGTGGTGGAGAACATAACCAGGGCCCACTTCCC < 41bp 1 0.560434361216999 1 0.127272248268127 experiment 0.879131277566003 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082382 chr17:78082385 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_18236 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157817 hm5C_site_19587 DeepMRMD:1;iRNA_m5C:0.999536712157817 19588 chr17 78082385 78082385 1 + G A CESC 78082400 + 78082380 78082420 41 AACATGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGG AACATAACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGG < 41bp 1 0.284838324148512 1 0.433907806873322 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082400 chr17:78082385 nonsynonymous SNV 0.995 4 6 hm5C_associated_SNPs_18237 0 0 0 0 2 Endoplasmic reticulum 1 0.500230806703315 1 0.99953838659337 hm5C_site_19588 DeepMRMD:1;iRNA_m5C:0.99953838659337 19589 chr17 78082385 78082385 1 + G A CESC 78082404 + 78082384 78082424 41 TGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC TAACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC < 41bp 1 0.592823179467092 1 0.320416390895844 experiment 0.814353641065816 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082404 chr17:78082385 nonsynonymous SNV 0.995 4 2 hm5C_associated_SNPs_18238 0 0 0 0 2 Endoplasmic reticulum 1 0.500231632095777 1 0.999536735808446 hm5C_site_19589 DeepMRMD:1;iRNA_m5C:0.999536735808446 19590 chr4 126398366 126398366 1 + C A CESC 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACAAATCCT < 41bp 1 0.11630752948695 1 0.788104355335236 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398366 nonsynonymous SNV 0.583 2 35 hm5C_associated_SNPs_18239 0 0 0 0 1 Endoplasmic reticulum 1 0.500231647793027 0.423791289329528 0.999536704413945 hm5C_site_19590 DeepMRMD:0.423791289329528;iRNA_m5C:0.999536704413945 19591 chr7 94057017 94057017 1 + T C CESC 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC CGATGGAGACCTCTACAGGGCTGACCAGCCTCGCTCAGCAC < 41bp 1 0.111125988654992 1 0.0191304683685303 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057017 nonsynonymous SNV 0.998 2 11 hm5C_associated_SNPs_18240 0 0 0 0 1 Endoplasmic reticulum 1 0.500231485430773 1 0.999537029138454 hm5C_site_19591 DeepMRMD:1;iRNA_m5C:0.999537029138454 19592 chr7 94057017 94057017 1 + T C CESC 94057032 + 94057012 94057052 41 GAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCT GAGACCTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCT < 41bp 1 0.114558373058471 1 0.225317150354385 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057032 chr7:94057017 nonsynonymous SNV 0.998 2 6 hm5C_associated_SNPs_18241 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_19592 DeepMRMD:1;iRNA_m5C:0.999536712157814 19593 chr3 184026613 184026613 1 + C T CESC 184026617 + 184026597 184026637 41 GGCCACTGAGGAGTTTCTTCCTGTTACCCCCATTCTGGAAG GGCCACTGAGGAGTTTTTTCCTGTTACCCCCATTCTGGAAG < 41bp 1 0.467762111417299 1 0.0358213782310486 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184026617 chr3:184026613 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_18243 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19593 DeepMRMD:1;iRNA_m5C:0.999536712157815 19594 chr17 29554588 29554588 1 + C G CESC 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGGGAACAAGCAACAAAGCTAATGCTTAACTATCCAAAA < 41bp 1 0.177807941256419 1 0.0828804969787598 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554588 nonsynonymous SNV 0.999 4 26 hm5C_associated_SNPs_18244 0 0 1 0 2 Nucleus 1 0.500231643919699 1 0.999536712160602 hm5C_site_19594 DeepMRMD:1;iRNA_m5C:0.999536712160602 19595 chr11 67075201 67075201 1 + C T CESC 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGTCTGGCGGGTC < 41bp 1 0.624726271889637 1 0.782238245010376 experiment 0.750547456220725 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075201 nonsynonymous SNV 0.018 0 31 hm5C_associated_SNPs_18245 0 0 0 0 1 nucleus 1 0.500231644238788 0.435523509979248 0.999536711522425 hm5C_site_19595 DeepMRMD:0.435523509979248;iRNA_m5C:0.999536711522425 19596 chr17 17697205 17697205 1 + G A CESC 17697208 + 17697188 17697228 41 CCAAGTATCAGCACTACGGGCAGCAAGGCCAGGGCTACTGC CCAAGTATCAGCACTACAGGCAGCAAGGCCAGGGCTACTGC < 41bp 1 0.571379418607072 1 0.55619204044342 experiment 0.857241162785856 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17697208 chr17:17697205 nonsynonymous SNV 0.993 2 18 hm5C_associated_SNPs_18246 0 0 1 0 0 chromatin 1 0.500231643921092 0.88761591911316 0.999536712157815 hm5C_site_19596 DeepMRMD:0.88761591911316;iRNA_m5C:0.999536712157815 19597 chr13 48937001 48937001 1 + C T CESC 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTCACCTCGAACACCCAGGCGAGGTTAGAACAGGAGTGCA < 41bp 1 0.693117081448509 1 0.801494300365448 experiment 0.613765837102982 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48937001 stopgain 1.000 1 27 hm5C_associated_SNPs_18247 0 0 1 1 1 Nucleus 1 0.500231643920834 0.397011399269104 0.999536712158331 hm5C_site_19597 DeepMRMD:0.397011399269104;iRNA_m5C:0.999536712158331 19598 chr12 73012759 73012759 1 + C T CESC 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCTGAGCTCTTTATCCTCTAGATAAATTACTGGAC < 41bp 1 0.11173261925785 1 0.345276772975922 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012759 stopgain 1.000 1 9 hm5C_associated_SNPs_18248 0 0 0 0 2 exosome 1 0.500231643671146 1 0.999536712657707 hm5C_site_19598 DeepMRMD:1;iRNA_m5C:0.999536712657707 19599 chr10 72299353 72299353 1 + G A CESC 72299347 + 72299327 72299367 41 CTTGCCCAGACCCTGGAGGCCCAGCTGAAGGCCCATCTAAG CTTGCCCAGACCCTGGAGGCCCAGCTAAAGGCCCATCTAAG < 41bp 1 0.118152459499948 1 0.0965423285961151 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72299347 chr10:72299353 synonymous SNV . 0 27 hm5C_associated_SNPs_18249 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_19599 DeepMRMD:1;iRNA_m5C:0.999536712157815 19600 chr4 502747 502747 1 + G C CESC 502758 + 502738 502778 41 TCTGCGTTTGAAAGGAAACCCGGTGAGAATTTAGGAATGTT TCTGCGTTTCAAAGGAAACCCGGTGAGAATTTAGGAATGTT < 41bp 1 0.201148216196999 1 0.362248867750168 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:502758 chr4:502747 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_18250 0 0 1 0 1 Nucleus 1 0.500231634747537 1 0.999536730504927 hm5C_site_19600 DeepMRMD:1;iRNA_m5C:0.999536730504927 19601 chr1 22329579 22329579 1 + C T CESC 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTA < 41bp 1 0.236175618802633 1 0.0922796726226807 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329579 stopgain 1.000 0 40 hm5C_associated_SNPs_18251 0 0 0 0 2 Endoplasmic reticulum 1 0.500231608257251 1 0.999536783485497 hm5C_site_19601 DeepMRMD:1;iRNA_m5C:0.999536783485497 19602 chr1 22329579 22329579 1 + C T CESC 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTAG < 41bp 1 0.211137704230036 1 0.221395164728165 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329579 stopgain 1.000 0 39 hm5C_associated_SNPs_18252 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644099592 1 0.999536711800816 hm5C_site_19602 DeepMRMD:1;iRNA_m5C:0.999536711800816 19603 chr1 22329579 22329579 1 + C T CESC 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTAGG < 41bp 1 0.0483425064514323 1 0.19636407494545 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329579 stopgain 1.000 0 38 hm5C_associated_SNPs_18253 0 0 0 0 2 Endoplasmic reticulum 1 0.500231639677071 1 0.999536720645857 hm5C_site_19603 DeepMRMD:1;iRNA_m5C:0.999536720645857 19604 chr1 22329579 22329579 1 + C T CESC 22329566 + 22329546 22329586 41 GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGTAGGTAAG < 41bp 1 0.558643928862266 1 0.199869513511658 experiment 0.882712142275468 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329566 chr1:22329579 stopgain 1.000 0 34 hm5C_associated_SNPs_18255 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19604 DeepMRMD:1;iRNA_m5C:0.999536712157815 19605 chr1 22329579 22329579 1 + C T CESC 22329569 + 22329549 22329589 41 GAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC GAGGATGCGGTCCCCTACAGCTGGCCCTGGTAGGTAAGAGC < 41bp 1 0.282861612873887 1 0.410171777009964 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329569 chr1:22329579 stopgain 1.000 0 31 hm5C_associated_SNPs_18256 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644005289 1 0.999536711989422 hm5C_site_19605 DeepMRMD:1;iRNA_m5C:0.999536711989422 19606 chr1 22329579 22329579 1 + C T CESC 22329573 + 22329553 22329593 41 ATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATA ATGCGGTCCCCTACAGCTGGCCCTGGTAGGTAAGAGCAATA < 41bp 1 0.110740634572652 1 0.0278286039829254 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329573 chr1:22329579 stopgain 1.000 0 27 hm5C_associated_SNPs_18257 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19606 DeepMRMD:1;iRNA_m5C:0.999536712157815 19607 chr1 22329579 22329579 1 + C T CESC 22329574 + 22329554 22329594 41 TGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAG TGCGGTCCCCTACAGCTGGCCCTGGTAGGTAAGAGCAATAG < 41bp 1 0.107207661331962 1 0.0754812359809875 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329574 chr1:22329579 stopgain 1.000 0 26 hm5C_associated_SNPs_18258 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19607 DeepMRMD:1;iRNA_m5C:0.999536712157815 19608 chr1 22329579 22329579 1 + C T CESC 22329575 + 22329555 22329595 41 GCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGC GCGGTCCCCTACAGCTGGCCCTGGTAGGTAAGAGCAATAGC < 41bp 1 0.359119568088092 1 0.0726176202297211 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329575 chr1:22329579 stopgain 1.000 0 25 hm5C_associated_SNPs_18259 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19608 DeepMRMD:1;iRNA_m5C:0.999536712157815 19609 chr6 29911954 29911954 1 + G C CESC 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAGGCCACCCTCAGGTGCTGGGCCCTGGGCTTCTACCC < 41bp 1 0.699293904425428 1 0.312530040740967 experiment 0.601412191149144 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911954 synonymous SNV . 0 15 hm5C_associated_SNPs_18260 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19609 DeepMRMD:1;iRNA_m5C:0.999536712157815 19610 chrX 47065735 47065735 1 + G A CESC 47065738 + 47065718 47065758 41 GGCAATGTGCAGGTGGTGATCCCCTTCCTGACAGAGTCGTA GGCAATGTGCAGGTGGTAATCCCCTTCCTGACAGAGTCGTA < 41bp 1 0.39417565155998 1 0.32927805185318 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47065738 chrX:47065735 synonymous SNV . 0 18 hm5C_associated_SNPs_18261 0 0 1 0 1 Nucleus 1 0.500231600775843 1 0.999536798448313 hm5C_site_19610 DeepMRMD:1;iRNA_m5C:0.999536798448313 19611 chr5 65349712 65349712 1 + C G CESC 65349718 + 65349698 65349738 41 AAAGCACTGAAGATCTCTCCCCTCAGAAAAGTGGTCCAGTT AAAGCACTGAAGATGTCTCCCCTCAGAAAAGTGGTCCAGTT < 41bp 1 0.273268495111553 1 0.110554218292236 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ERBIN ENSG00000112851 CDS Human protein_coding chr5:65349718 chr5:65349712 nonsynonymous SNV 0.988 2 15 hm5C_associated_SNPs_18262 0 0 1 0 0 Nucleus 1 0.500231643920786 1 0.999536712158428 hm5C_site_19611 DeepMRMD:1;iRNA_m5C:0.999536712158428 19612 chr5 65349712 65349712 1 + C G CESC 65349721 + 65349701 65349741 41 GCACTGAAGATCTCTCCCCTCAGAAAAGTGGTCCAGTTGGA GCACTGAAGATGTCTCCCCTCAGAAAAGTGGTCCAGTTGGA < 41bp 1 0.614505070049508 1 0.777742147445679 experiment 0.770989859900984 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ERBIN ENSG00000112851 CDS Human protein_coding chr5:65349721 chr5:65349712 nonsynonymous SNV 0.988 2 12 hm5C_associated_SNPs_18263 0 0 1 0 0 Nucleus 1 0.500231643948434 0.444515705108642 0.999536712103133 hm5C_site_19612 DeepMRMD:0.444515705108642;iRNA_m5C:0.999536712103133 19613 chr15 77756669 77756669 1 + G A CESC 77756689 + 77756669 77756709 41 GTTGCTTCAGAGTGAGTCTTCAAATGCAGCAGAAGGCAATG ATTGCTTCAGAGTGAGTCTTCAAATGCAGCAGAAGGCAATG < 41bp 1 0.479362825202914 1 0.249027281999588 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HMG20A ENSG00000140382 CDS Human protein_coding chr15:77756689 chr15:77756669 synonymous SNV . 0 1 hm5C_associated_SNPs_18264 0 0 1 0 2 Ribosome 1 0.500231638619568 1 0.999536722760864 hm5C_site_19613 DeepMRMD:1;iRNA_m5C:0.999536722760864 19614 chr3 182597360 182597360 1 + G A CESC 182597357 + 182597337 182597377 41 TATCTCTTGCACTCAGGGAGCATGAAAAACTATTTATGGAA TATCTCTTGCACTCAGGGAGCATAAAAAACTATTTATGGAA < 41bp 1 0.271765917158784 1 0.430989235639572 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182597357 chr3:182597360 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_18265 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644029039 1 0.999536711941921 hm5C_site_19614 DeepMRMD:1;iRNA_m5C:0.999536711941921 19615 chr17 40695717 40695717 1 + C T CESC 40695702 + 40695682 40695722 41 GCCCCGCCTTCCGCTACGACCTGCTGGACCTCACTCGGCAG GCCCCGCCTTCCGCTACGACCTGCTGGACCTCACTTGGCAG < 41bp 1 0.432575690303667 1 0.339522659778595 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAGLU ENSG00000108784 CDS Human protein_coding chr17:40695702 chr17:40695717 nonsynonymous SNV 0.819 5 36 hm5C_associated_SNPs_18267 2 0 0 0 0 Endoplasmic reticulum 1 0.500231639103248 1 0.999536721793503 hm5C_site_19615 DeepMRMD:1;iRNA_m5C:0.999536721793503 Mucopolysaccharidosis, MPS-III-B Mucopolysaccharidosis, MPS-III-B 19616 chrX 152954131 152954131 1 + C T CESC 152954118 + 152954098 152954138 41 CGCGCCCGGGCCCGACGGGGCCCCGGCCAAGGGCGACGGCC CGCGCCCGGGCCCGACGGGGCCCCGGCCAAGGGTGACGGCC < 41bp 1 0.335654261276265 1 0.361343681812286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152954118 chrX:152954131 synonymous SNV . 0 34 hm5C_associated_SNPs_18268 0 0 1 0 0 Ribosome 1 0.500578041134444 1 0.998843917731113 hm5C_site_19616 DeepMRMD:1;iRNA_m5C:0.998843917731113 19617 chrX 152954131 152954131 1 + C T CESC 152954119 + 152954099 152954139 41 GCGCCCGGGCCCGACGGGGCCCCGGCCAAGGGCGACGGCCC GCGCCCGGGCCCGACGGGGCCCCGGCCAAGGGTGACGGCCC < 41bp 1 0.610427105871455 1 0.329592287540436 experiment 0.77914578825709 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152954119 chrX:152954131 synonymous SNV . 0 33 hm5C_associated_SNPs_18269 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19617 DeepMRMD:1;iRNA_m5C:0.999536712157815 19618 chr1 976894 976894 1 + G T CESC 976875 + 976855 976895 41 CAGACCCCTGTCAGGGCGCCCTCCCTGACCCGAGCCGCAGC CAGACCCCTGTCAGGGCGCCCTCCCTGACCCGAGCCGCATC < 41bp 1 0.163763011600412 1 0.33487930893898 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:976875 chr1:976894 nonsynonymous SNV 0.026 0 40 hm5C_associated_SNPs_18270 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643893479 1 0.999536712213043 hm5C_site_19618 DeepMRMD:1;iRNA_m5C:0.999536712213043 19619 chr7 103006572 103006572 1 + C T CESC 103006582 + 103006562 103006602 41 ACAAAAAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGC ACAAAAAAAGTCTGCCTTATCTTCTTTGATGAAATTGATGC < 41bp 1 0.452770066691116 1 0.270779848098755 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103006582 chr7:103006572 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_18271 0 0 0 0 2 Ribosome 1 0.500231643919103 1 0.999536712161795 hm5C_site_19619 DeepMRMD:1;iRNA_m5C:0.999536712161795 19620 chrX 73046100 73046100 1 + G A CESC 73046118 - 73046098 73046138 41 TTGACCCCAGAAGCCCTAGACTGAGAAGATAAAATGGTCAG TTGACCCCAGAAGCCCTAGACTGAGAAGATAAAATGGTTAG < 41bp 1 0.271082529018449 1 0.323838710784912 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046118 chrX:73046100 . . 0 39 hm5C_associated_SNPs_18272 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19620 DeepMRMD:1;iRNA_m5C:0.999536712157815 19621 chr19 42373233 42373233 1 + G T CESC 42373215 + 42373195 42373235 41 CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCGGG CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCTGG < 41bp 1 0.28901666550597 1 0.301229298114777 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373215 chr19:42373233 nonsynonymous SNV 0.971 2 39 hm5C_associated_SNPs_18273 0 0 1 0 1 Cytosol 1 0.500231643921805 1 0.99953671215639 hm5C_site_19621 DeepMRMD:1;iRNA_m5C:0.99953671215639 19622 chr19 42373233 42373233 1 + G T CESC 42373228 + 42373208 42373248 41 CGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCT CGAGGCTCCAAGAGTGTGGCCCGCCTGGTCCTCCAAGCCCT < 41bp 1 0.239882868066478 1 0.0407093167304993 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373228 chr19:42373233 nonsynonymous SNV 0.971 2 26 hm5C_associated_SNPs_18274 0 0 1 0 1 Cytosol 1 0.500231643923065 1 0.999536712153869 hm5C_site_19622 DeepMRMD:1;iRNA_m5C:0.999536712153869 19623 chr19 42373233 42373233 1 + G T CESC 42373231 + 42373211 42373251 41 GGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGA GGCTCCAAGAGTGTGGCCCGCCTGGTCCTCCAAGCCCTGGA < 41bp 1 0.276051477841292 1 0.0840632617473602 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373231 chr19:42373233 nonsynonymous SNV 0.971 2 23 hm5C_associated_SNPs_18275 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19623 DeepMRMD:1;iRNA_m5C:0.999536712157815 19624 chr19 42373233 42373233 1 + G T CESC 42373237 + 42373217 42373257 41 AAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCT AAGAGTGTGGCCCGCCTGGTCCTCCAAGCCCTGGAGGGGCT < 41bp 1 0.0756367874786204 1 0.121882349252701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373237 chr19:42373233 nonsynonymous SNV 0.971 2 17 hm5C_associated_SNPs_18277 0 0 1 0 1 Cytosol 1 0.500231643921167 1 0.999536712157666 hm5C_site_19624 DeepMRMD:1;iRNA_m5C:0.999536712157666 19625 chr2 10188421 10188421 1 + T G CESC 10188402 + 10188382 10188422 41 TCCCCAGTTGTCTGTGGGGACTGTGAGACCCATCCTAGCTC TCCCCAGTTGTCTGTGGGGACTGTGAGACCCATCCTAGCGC < 41bp 1 0.574400483806547 1 0.0852572321891785 experiment 0.851199032386905 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KLF11 ENSG00000172059 CDS Human protein_coding chr2:10188402 chr2:10188421 synonymous SNV . 0 40 hm5C_associated_SNPs_18278 0 0 1 0 0 nucleoplasm 1 0.500231643921089 1 0.999536712157823 hm5C_site_19625 DeepMRMD:1;iRNA_m5C:0.999536712157823 19626 chr19 34818694 34818694 1 + G T CESC 34818689 + 34818669 34818709 41 TTTCCAGGCATATAAGATAGCTCTGGAAAGCTTAGGACACT TTTCCAGGCATATAAGATAGCTCTGTAAAGCTTAGGACACT < 41bp 1 0.175845601354364 1 0.252857714891434 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34818689 chr19:34818694 stopgain 1.000 1 26 hm5C_associated_SNPs_18279 0 0 1 0 2 Cytosol 1 0.500231643813713 1 0.999536712372575 hm5C_site_19626 DeepMRMD:1;iRNA_m5C:0.999536712372575 19627 chr10 118314781 118314781 1 + G A CESC 118314776 + 118314756 118314796 41 CCAAATTTGTGGATGTAATTCACACGGATGGTGCCCCCATA CCAAATTTGTGGATGTAATTCACACAGATGGTGCCCCCATA < 41bp 1 0.553279326235651 1 0.0853571593761444 experiment 0.893441347528697 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314776 chr10:118314781 synonymous SNV . 0 26 hm5C_associated_SNPs_18280 0 0 0 0 1 unknown 1 0.500231643844138 1 0.999536712311724 hm5C_site_19627 DeepMRMD:1;iRNA_m5C:0.999536712311724 19628 chr10 118314781 118314781 1 + G A CESC 118314780 + 118314760 118314800 41 ATTTGTGGATGTAATTCACACGGATGGTGCCCCCATAGTCC ATTTGTGGATGTAATTCACACAGATGGTGCCCCCATAGTCC < 41bp 1 0.645479677703738 1 0.175532639026642 experiment 0.709040644592525 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314780 chr10:118314781 synonymous SNV . 0 22 hm5C_associated_SNPs_18282 0 0 0 0 1 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_19628 DeepMRMD:1;iRNA_m5C:0.999536712157814 19629 chr10 118314781 118314781 1 + G A CESC 118314789 + 118314769 118314809 41 TGTAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGG TGTAATTCACACAGATGGTGCCCCCATAGTCCCCAATTTGG < 41bp 1 0.105746862660539 1 0.0292183756828308 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314789 chr10:118314781 synonymous SNV . 0 13 hm5C_associated_SNPs_18283 0 0 0 0 1 unknown 1 0.500231643920481 1 0.999536712159039 hm5C_site_19629 DeepMRMD:1;iRNA_m5C:0.999536712159039 19630 chr10 118314781 118314781 1 + G A CESC 118314790 + 118314770 118314810 41 GTAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGG GTAATTCACACAGATGGTGCCCCCATAGTCCCCAATTTGGG < 41bp 1 0.438212296072651 1 0.0756638944149017 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314790 chr10:118314781 synonymous SNV . 0 12 hm5C_associated_SNPs_18284 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_19630 DeepMRMD:1;iRNA_m5C:0.999536712157816 19631 chr10 118314781 118314781 1 + G A CESC 118314791 + 118314771 118314811 41 TAATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGT TAATTCACACAGATGGTGCCCCCATAGTCCCCAATTTGGGT < 41bp 1 0.0965436986708788 1 0.0642115771770477 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314791 chr10:118314781 synonymous SNV . 0 11 hm5C_associated_SNPs_18285 0 0 0 0 1 unknown 1 0.500231644023928 1 0.999536711952145 hm5C_site_19631 DeepMRMD:1;iRNA_m5C:0.999536711952145 19632 chr10 118314781 118314781 1 + G A CESC 118314792 + 118314772 118314812 41 AATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGTG AATTCACACAGATGGTGCCCCCATAGTCCCCAATTTGGGTG < 41bp 1 0.328672417456452 1 0.135274201631546 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314792 chr10:118314781 synonymous SNV . 0 10 hm5C_associated_SNPs_18286 0 0 0 0 1 unknown 1 0.500231643921085 1 0.99953671215783 hm5C_site_19632 DeepMRMD:1;iRNA_m5C:0.99953671215783 19633 chr10 118314781 118314781 1 + G A CESC 118314793 + 118314773 118314813 41 ATTCACACGGATGGTGCCCCCATAGTCCCCAATTTGGGTGA ATTCACACAGATGGTGCCCCCATAGTCCCCAATTTGGGTGA < 41bp 1 0.478125717296949 1 0.301168113946915 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314793 chr10:118314781 synonymous SNV . 0 9 hm5C_associated_SNPs_18287 0 0 0 0 1 unknown 1 0.500231643947592 1 0.999536712104815 hm5C_site_19633 DeepMRMD:1;iRNA_m5C:0.999536712104815 19634 chr10 118314781 118314781 1 + G A CESC 118314800 + 118314780 118314820 41 CGGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTC CAGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTC < 41bp 1 0.537595018768133 1 0.0999529957771301 experiment 0.924809962463733 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314800 chr10:118314781 synonymous SNV . 0 2 hm5C_associated_SNPs_18289 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19634 DeepMRMD:1;iRNA_m5C:0.999536712157815 19635 chr10 118314781 118314781 1 + G A CESC 118314801 + 118314781 118314821 41 GGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTCA AGATGGTGCCCCCATAGTCCCCAATTTGGGTGAGTTCCTCA < 41bp 1 0.194380714888209 1 0.0393078029155731 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314801 chr10:118314781 synonymous SNV . 0 1 hm5C_associated_SNPs_18290 0 0 0 0 1 unknown 1 0.50023167072597 1 0.99953665854806 hm5C_site_19635 DeepMRMD:1;iRNA_m5C:0.99953665854806 19636 chr1 206902147 206902147 1 + C T CESC 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATCGTGGATGTGTATGAGAATCT < 41bp 1 0.500139250657468 1 0.118220925331116 experiment 0.999721498685064 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902147 synonymous SNV . 0 33 hm5C_associated_SNPs_18291 0 0 1 0 2 Ribosome 1 0.500230949714544 1 0.999538100570911 hm5C_site_19636 DeepMRMD:1;iRNA_m5C:0.999538100570911 19637 chr17 28772947 28772947 1 + C A CESC 28772959 + 28772939 28772979 41 ATCTGGCTCTGGCTCTTTATCGATACCATTCCTACAAAGAC ATCTGGCTATGGCTCTTTATCGATACCATTCCTACAAAGAC < 41bp 1 0.538365775000772 1 0.706809282302856 experiment 0.923268449998456 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPD ENSG00000108582 CDS Human protein_coding chr17:28772959 chr17:28772947 nonsynonymous SNV 0.984 1 9 hm5C_associated_SNPs_18292 0 0 1 0 1 Nucleus 1 0.500231643921093 0.586381435394288 0.999536712157814 hm5C_site_19637 DeepMRMD:0.586381435394288;iRNA_m5C:0.999536712157814 19638 chr12 56536116 56536116 1 + C G CESC 56536133 + 56536113 56536153 41 CCTCTCAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC CCTGTCAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC < 41bp 1 0.245354448549805 1 0.0653214752674103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536133 chr12:56536116 synonymous SNV . 0 4 hm5C_associated_SNPs_18293 0 0 1 0 2 Endoplasmic reticulum 1 0.500231650009049 1 0.999536699981903 hm5C_site_19638 DeepMRMD:1;iRNA_m5C:0.999536699981903 19639 chr22 24237116 24237116 1 + G C CESC 24237096 + 24237076 24237116 41 TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAGCGCCTGCG TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAGCGCCTGCC < 41bp 1 0.137166559122762 1 0.0966968834400177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237096 chr22:24237116 nonsynonymous SNV 0.992 0 41 hm5C_associated_SNPs_18294 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19639 DeepMRMD:1;iRNA_m5C:0.999536712157815 19640 chr22 24237116 24237116 1 + G C CESC 24237109 + 24237089 24237129 41 TGTGCGGCCTGCTGGCCGAGCGCCTGCGCATCAGCCCGGAC TGTGCGGCCTGCTGGCCGAGCGCCTGCCCATCAGCCCGGAC < 41bp 1 0.580492687423361 1 0.114024579524994 experiment 0.839014625153277 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237109 chr22:24237116 nonsynonymous SNV 0.992 0 28 hm5C_associated_SNPs_18295 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_19640 DeepMRMD:1;iRNA_m5C:0.999536712157816 19641 chr22 24237116 24237116 1 + G C CESC 24237117 + 24237097 24237137 41 CTGCTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGC CTGCTGGCCGAGCGCCTGCCCATCAGCCCGGACAGGTACGC < 41bp 1 0.618279741944118 1 0.168879985809326 experiment 0.763440516111764 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237117 chr22:24237116 nonsynonymous SNV 0.992 0 20 hm5C_associated_SNPs_18296 0 0 1 0 1 Ribosome 1 0.500231569409211 1 0.999536861181578 hm5C_site_19641 DeepMRMD:1;iRNA_m5C:0.999536861181578 19642 chr22 24237116 24237116 1 + G C CESC 24237120 + 24237100 24237140 41 CTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGCGGA CTGGCCGAGCGCCTGCCCATCAGCCCGGACAGGTACGCGGA < 41bp 1 0.597481249761867 1 0.587196052074432 experiment 0.805037500476266 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237120 chr22:24237116 nonsynonymous SNV 0.992 0 17 hm5C_associated_SNPs_18297 0 0 1 0 1 Ribosome 1 0.500231643921093 0.825607895851136 0.999536712157814 hm5C_site_19642 DeepMRMD:0.825607895851136;iRNA_m5C:0.999536712157814 19643 chr17 61498531 61498531 1 + C T CESC 61498535 + 61498515 61498555 41 CTATTACCCAGTCTGTCACTCAAAACTAGATCTGGAGCGCT CTATTACCCAGTCTGTTACTCAAAACTAGATCTGGAGCGCT < 41bp 1 0.220778151100405 1 0.828159749507904 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61498535 chr17:61498531 nonsynonymous SNV 0.998 1 17 hm5C_associated_SNPs_18298 0 0 0 0 0 Cytosol 1 0.500231643921092 0.343680500984192 0.999536712157815 hm5C_site_19643 DeepMRMD:0.343680500984192;iRNA_m5C:0.999536712157815 19644 chr2 175268854 175268854 1 + C G CESC 175268839 + 175268819 175268859 41 CTTTGAAAATAGAGGGAGTTCGTAATATTTCTAATCAACTT CTTTGAAAATAGAGGGAGTTCGTAATATTTCTAATGAACTT < 41bp 1 0.597700125400747 1 0.253552228212357 experiment 0.804599749198505 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175268839 chr2:175268854 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_18299 0 0 1 0 1 exosome 1 0.50023708127629 1 0.99952583744742 hm5C_site_19644 DeepMRMD:1;iRNA_m5C:0.99952583744742 19645 chr14 72152249 72152249 1 + G A CESC 72152244 + 72152224 72152264 41 CAGGTGCAGAGTCCCATGACCTCGCGGCTGAATGCTGGAAA CAGGTGCAGAGTCCCATGACCTCGCAGCTGAATGCTGGAAA < 41bp 1 0.399597602434122 1 0.244484126567841 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152244 chr14:72152249 nonsynonymous SNV 0.888 1 26 hm5C_associated_SNPs_18300 0 0 1 0 1 Nucleus 1 0.500236274829503 1 0.999527450340995 hm5C_site_19645 DeepMRMD:1;iRNA_m5C:0.999527450340995 19646 chr14 72152249 72152249 1 + G A CESC 72152246 + 72152226 72152266 41 GGTGCAGAGTCCCATGACCTCGCGGCTGAATGCTGGAAAAG GGTGCAGAGTCCCATGACCTCGCAGCTGAATGCTGGAAAAG < 41bp 1 0.633003427383631 1 0.392364203929901 experiment 0.733993145232739 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152246 chr14:72152249 nonsynonymous SNV 0.888 1 24 hm5C_associated_SNPs_18301 0 0 1 0 1 Nucleus 1 0.500231759818561 1 0.999536480362878 hm5C_site_19646 DeepMRMD:1;iRNA_m5C:0.999536480362878 19647 chr6 31600766 31600766 1 + G A CESC 31600751 + 31600731 31600771 41 AGGCGACAAGAGGAGCTGGCCCTCTCCCAAGAACCGAAGGT AGGCGACAAGAGGAGCTGGCCCTCTCCCAAGAACCAAAGGT < 41bp 1 0.0944919442346538 1 0.108713060617447 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31600751 chr6:31600766 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_18302 0 0 1 0 1 Ribosome 1 0.50023164392374 1 0.99953671215252 hm5C_site_19647 DeepMRMD:1;iRNA_m5C:0.99953671215252 19648 chr6 31600766 31600766 1 + G A CESC 31600754 + 31600734 31600774 41 CGACAAGAGGAGCTGGCCCTCTCCCAAGAACCGAAGGTGGG CGACAAGAGGAGCTGGCCCTCTCCCAAGAACCAAAGGTGGG < 41bp 1 0.283144123225353 1 0.583602786064148 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31600754 chr6:31600766 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_18303 0 0 1 0 1 Ribosome 1 0.500231643921092 0.832794427871704 0.999536712157815 hm5C_site_19648 DeepMRMD:0.832794427871704;iRNA_m5C:0.999536712157815 19649 chrX 152915696 152915696 1 + C G CESC 152915709 + 152915689 152915729 41 GCGGCCTCCAACCCGCCCTCCTTCTTCACCACCCCCACCAG GCGGCCTGCAACCCGCCCTCCTTCTTCACCACCCCCACCAG < 41bp 1 0.210347280641308 1 0.222688347101212 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152915709 chrX:152915696 nonsynonymous SNV 0.020 2 8 hm5C_associated_SNPs_18304 0 0 0 0 0 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_19649 DeepMRMD:1;iRNA_m5C:0.999536712157815 19650 chr1 44684037 44684037 1 + G C CESC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATCAT < 41bp 1 0.599640164787394 1 0.313158273696899 experiment 0.800719670425212 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684037 nonsynonymous SNV 0.963 1 39 hm5C_associated_SNPs_18305 0 0 1 0 2 chromatin 1 0.500231643915652 1 0.999536712168696 hm5C_site_19650 DeepMRMD:1;iRNA_m5C:0.999536712168696 19651 chr3 47882504 47882504 1 + G C CESC 47882499 + 47882479 47882519 41 TGCCCCCTACTTCCTGGCGGCAGCTGAATCCAGAGAGTATT TGCCCCCTACTTCCTGGCGGCAGCTCAATCCAGAGAGTATT < 41bp 1 0.184138818398359 1 0.0674141943454742 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47882499 chr3:47882504 synonymous SNV . 0 26 hm5C_associated_SNPs_18306 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19651 DeepMRMD:1;iRNA_m5C:0.999536712157815 19652 chr16 31131776 31131776 1 + G A CESC 31131787 + 31131767 31131807 41 GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCGCAA GAGCAGCCTAAGCGCAAGATCACTCGCAACCAAAAGCGCAA < 41bp 1 0.230844493357083 1 0.0528246164321899 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131787 chr16:31131776 nonsynonymous SNV 0.992 1 10 hm5C_associated_SNPs_18307 0 0 1 0 1 Ribosome 1 0.500231643920975 1 0.999536712158049 hm5C_site_19652 DeepMRMD:1;iRNA_m5C:0.999536712158049 19653 chr11 65270077 65270077 1 + G C CESC 65270066 + 65270046 65270086 41 AATGTCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGG AATGTCTCTTAGAGGGTGGGCTTTTGTTGATCAGGGAGGGG < 41bp 1 0.0652594415962631 1 0.0844070017337799 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270066 chr11:65270077 . . 0 32 hm5C_associated_SNPs_18308 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19653 DeepMRMD:1;iRNA_m5C:0.999536712157815 19654 chr6 32943932 32943932 1 + G A CESC 32943944 + 32943924 32943964 41 CAAGAAGGGGGCCAAGTTGGCAGGTAGGAAGAGTGGGAGTT CAAGAAGGAGGCCAAGTTGGCAGGTAGGAAGAGTGGGAGTT < 41bp 1 0.551038580563922 1 0.744854807853699 experiment 0.897922838872155 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32943944 chr6:32943932 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_18309 0 0 1 0 1 Cytosol 1 0.500231643904314 0.510290384292602 0.999536712191371 hm5C_site_19654 DeepMRMD:0.510290384292602;iRNA_m5C:0.999536712191371 19655 chr17 27936291 27936291 1 + G C CESC 27936282 + 27936262 27936302 41 CAGCTTGACACCAAGAATATCTCCTTTGAGAGGTGGGTGGA CAGCTTGACACCAAGAATATCTCCTTTGACAGGTGGGTGGA < 41bp 1 0.395746105507528 1 0.713346898555756 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27936282 chr17:27936291 nonsynonymous SNV 0.999 4 30 hm5C_associated_SNPs_18310 0 0 0 0 1 chromatin 1 0.500231643921092 0.573306202888488 0.999536712157815 hm5C_site_19655 DeepMRMD:0.573306202888488;iRNA_m5C:0.999536712157815 19656 chr1 2087470 2087470 1 + G C CESC 2087488 + 2087468 2087508 41 TTGAGCAGGCATCCAGCAACCCCTTCCTGGTCGGATTACAC TTCAGCAGGCATCCAGCAACCCCTTCCTGGTCGGATTACAC < 41bp 1 0.0674006009686283 1 0.0408521890640259 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2087488 chr1:2087470 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_18311 0 0 1 1 2 Ribosome 1 0.500231648457748 1 0.999536703084504 hm5C_site_19656 DeepMRMD:1;iRNA_m5C:0.999536703084504 19657 chr12 101674919 101674919 1 + G A CESC 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATTTGCTGAACGACTGGAGAATGTTAATATTGAT < 41bp 1 0.467486919244029 1 0.275809526443481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674919 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_18312 0 0 1 0 2 Cytosol 1 0.500231642961437 1 0.999536714077126 hm5C_site_19657 DeepMRMD:1;iRNA_m5C:0.999536714077126 19658 chrX 123229269 123229269 1 + C A CESC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTAT < 41bp 1 0.501187736339537 1 0.417167216539383 experiment 0.997624527320926 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229269 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_18313 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_19658 DeepMRMD:1;iRNA_m5C:0.999536712157815 19659 chr16 15788036 15788036 1 + A G CESC 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCGCCGGGGGGACCCCCCTCACACCTGCGGCCCG < 41bp 1 0.223323953042903 1 0.184419870376587 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788036 nonsynonymous SNV 0.261 0 10 hm5C_associated_SNPs_18314 0 0 1 0 2 chromatin 1 0.500231633473131 1 0.999536733053737 hm5C_site_19659 DeepMRMD:1;iRNA_m5C:0.999536733053737 19660 chr15 63481897 63481897 1 + T G CESC 63481916 + 63481896 63481936 41 CTGTTCCGCTTCTCAGAGGACGCCTTCAACACCACCTTCAT CGGTTCCGCTTCTCAGAGGACGCCTTCAACACCACCTTCAT < 41bp 1 0.604122244253191 1 0.0968928039073944 experiment 0.791755511493618 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB8B ENSG00000166128 CDS Human protein_coding chr15:63481916 chr15:63481897 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_18315 0 0 1 0 1 Nucleus 1 0.500231643900178 1 0.999536712199643 hm5C_site_19660 DeepMRMD:1;iRNA_m5C:0.999536712199643 19661 chr10 93600322 93600322 1 + T G CESC 93600328 + 93600308 93600348 41 TGTCCTTCAGAAACTGTGTACTGTTCAGAGTGTCAACTGCA TGTCCTTCAGAAACGGTGTACTGTTCAGAGTGTCAACTGCA < 41bp 1 0.07928120678029 1 0.0365868508815765 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93600328 chr10:93600322 nonsynonymous SNV 0.998 3 15 hm5C_associated_SNPs_18316 0 0 1 0 1 Ribosome 1 0.500231667427135 1 0.999536665145731 hm5C_site_19661 DeepMRMD:1;iRNA_m5C:0.999536665145731 19662 chrX 135106607 135106607 1 + T C CESC 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTATTTGGTGGCGGCACCACTGCAATGCTGTCATGCTT < 41bp 1 0.318759801994072 1 0.562820911407471 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106607 synonymous SNV . 0 15 hm5C_associated_SNPs_18317 0 0 1 0 1 Endoplasmic reticulum 1 0.500231264978013 0.874358177185058 0.999537470043975 hm5C_site_19662 DeepMRMD:0.874358177185058;iRNA_m5C:0.999537470043975 19663 chr1 24022863 24022863 1 + A C CESC 24022845 + 24022825 24022865 41 CTCTTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAAT CTCTTTCAGTATGATGGGATCATCCTTCCTGGCAAATACAT < 41bp 1 0.0962219066740706 1 0.0308486819267273 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022845 chr1:24022863 stoploss 1.000 0 39 hm5C_associated_SNPs_18318 0 0 1 0 1 Cytosol 1 0.5002147527818 1 0.9995704944364 hm5C_site_19663 DeepMRMD:1;iRNA_m5C:0.9995704944364 19664 chr1 24022863 24022863 1 + A C CESC 24022848 + 24022828 24022868 41 TTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAATTCC TTTCAGTATGATGGGATCATCCTTCCTGGCAAATACATTCC < 41bp 1 0.0400447323837332 1 0.0410789847373962 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022848 chr1:24022863 stoploss 1.000 0 36 hm5C_associated_SNPs_18319 0 0 1 0 1 Cytosol 1 0.500231643921084 1 0.999536712157833 hm5C_site_19664 DeepMRMD:1;iRNA_m5C:0.999536712157833 19665 chr5 9549024 9549024 1 + C A CESC 9549007 + 9548987 9549027 41 TTGAAAAATGCCATCCATTTCCTGATTCACCTCAATTCTGT TTGAAAAATGCCATCCATTTCCTGATTCACCTCAATTATGT < 41bp 1 0.328867995616751 1 0.0564972162246704 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000250786 ncRNA_intronic Human lincRNA chr5:9549007 chr5:9549024 . . 0 38 hm5C_associated_SNPs_18320 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19665 DeepMRMD:1;iRNA_m5C:0.999536712157815 19666 chr18 48446854 48446854 1 + G A CESC 48446838 + 48446818 48446858 41 GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGAAGA GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCAAAGA < 41bp 1 0.238926287697375 1 0.155387878417969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ME2 ENSG00000082212 CDS Human protein_coding chr18:48446838 chr18:48446854 nonsynonymous SNV 0.983 4 37 hm5C_associated_SNPs_18321 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19666 DeepMRMD:1;iRNA_m5C:0.999536712157815 19667 chr6 144724303 144724303 1 + A C CESC 144724309 + 144724289 144724329 41 TTACCAAATGGATAAATGCTCGATTTTCAAAGGTAACTGAG TTACCAAATGGATACATGCTCGATTTTCAAAGGTAACTGAG < 41bp 1 0.0760383588658595 1 0.129245847463608 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144724309 chr6:144724303 nonsynonymous SNV 0.985 5 15 hm5C_associated_SNPs_18322 0 0 1 0 2 Nucleus 1 0.500236515843978 1 0.999526968312044 hm5C_site_19667 DeepMRMD:1;iRNA_m5C:0.999526968312044 19668 chr9 128678194 128678194 1 + G T CESC 128678180 + 128678160 128678200 41 CCCAGATCAGACAAATCTATCACACAGAACTGGAGAAATAT CCCAGATCAGACAAATCTATCACACAGAACTGGATAAATAT < 41bp 1 0.223269929612656 1 0.0834093391895294 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PBX3 ENSG00000167081 CDS Human protein_coding chr9:128678180 chr9:128678194 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_18323 0 0 1 0 1 Nucleus 1 0.500231530131276 1 0.999536939737448 hm5C_site_19668 DeepMRMD:1;iRNA_m5C:0.999536939737448 19669 chr5 71493364 71493364 1 + T G CESC 71493379 + 71493359 71493399 41 AAAGTTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATC AAAGTGTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATC < 41bp 1 0.203429409427404 1 0.185040414333344 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493379 chr5:71493364 synonymous SNV . 0 6 hm5C_associated_SNPs_18324 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19669 DeepMRMD:1;iRNA_m5C:0.999536712157815 19670 chr5 71493364 71493364 1 + T G CESC 71493383 + 71493363 71493403 41 TTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATCCGAG TGTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATCCGAG < 41bp 1 0.0404012130714111 1 0.115799516439438 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493383 chr5:71493364 synonymous SNV . 0 2 hm5C_associated_SNPs_18325 0 0 1 0 0 Cytosol 1 0.500231651984441 1 0.999536696031119 hm5C_site_19670 DeepMRMD:1;iRNA_m5C:0.999536696031119 19671 chr5 139494072 139494072 1 + C T CESC 139494074 + 139494054 139494094 41 CAAGAGCCGCCTTACTCTCTCCATGTCAGTGGCCGTGGAGT CAAGAGCCGCCTTACTCTTTCCATGTCAGTGGCCGTGGAGT < 41bp 1 0.203732992934647 1 0.244440972805023 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PURA ENSG00000185129 CDS Human protein_coding chr5:139494074 chr5:139494072 synonymous SNV . 0 19 hm5C_associated_SNPs_18326 0 0 1 0 0 Ribosome 1 0.500231639947751 1 0.999536720104498 hm5C_site_19671 DeepMRMD:1;iRNA_m5C:0.999536720104498 19672 chr4 113352584 113352584 1 + G T CESC 113352571 + 113352551 113352591 41 GGTGGACACTCAGTGTTCCACTGCCTTGTCTGAGGAGCTAG GGTGGACACTCAGTGTTCCACTGCCTTGTCTGATGAGCTAG < 41bp 1 0.45783145972561 1 0.424958884716034 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113352571 chr4:113352584 nonsynonymous SNV 0.031 0 34 hm5C_associated_SNPs_18327 0 0 0 0 0 chromatin 1 0.500166904617456 1 0.999666190765089 hm5C_site_19672 DeepMRMD:1;iRNA_m5C:0.999666190765089 19673 chr4 113352584 113352584 1 + G T CESC 113352588 + 113352568 113352608 41 CCACTGCCTTGTCTGAGGAGCTAGAGAATGACAGGGAAGGC CCACTGCCTTGTCTGATGAGCTAGAGAATGACAGGGAAGGC < 41bp 1 0.647994111971077 1 0.224159806966782 experiment 0.704011776057846 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113352588 chr4:113352584 nonsynonymous SNV 0.031 0 17 hm5C_associated_SNPs_18328 0 0 0 0 0 chromatin 1 0.500231638813185 1 0.99953672237363 hm5C_site_19673 DeepMRMD:1;iRNA_m5C:0.99953672237363 19674 chr2 201485959 201485959 1 + C T CESC 201485944 + 201485924 201485964 41 CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGCGACAG CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGTGACAG < 41bp 1 0.386024522730069 1 0.123120605945587 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201485944 chr2:201485959 nonsynonymous SNV 0.103 0 36 hm5C_associated_SNPs_18329 0 0 0 0 1 Endoplasmic reticulum 1 0.500231719935237 1 0.999536560129526 hm5C_site_19674 DeepMRMD:1;iRNA_m5C:0.999536560129526 19675 chr2 231326077 231326077 1 + T G CESC 231326090 + 231326070 231326110 41 CAAAAGTTGAGTGCCAAGCCCAAGCAAGAACTCATCATAAC CAAAAGTGGAGTGCCAAGCCCAAGCAAGAACTCATCATAAC < 41bp 1 0.349523867470133 1 0.554726123809814 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SP100 ENSG00000067066 CDS Human protein_coding chr2:231326090 chr2:231326077 synonymous SNV . 0 8 hm5C_associated_SNPs_18330 0 0 0 0 1 Ribosome 1 0.500172617552838 0.890547752380372 0.999654764894323 hm5C_site_19675 DeepMRMD:0.890547752380372;iRNA_m5C:0.999654764894323 19676 chr9 140622861 140622861 1 + G T CESC 140622869 + 140622849 140622889 41 AAGGAACCAAAAGAGGAGATCAACAAAAACATTTCTGACTT AAGGAACCAAAATAGGAGATCAACAAAAACATTTCTGACTT < 41bp 1 0.42255400519009 1 0.3763707280159 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140622869 chr9:140622861 stopgain 0.965 0 13 hm5C_associated_SNPs_18331 0 0 1 0 1 chromatin 1 0.500231643155646 1 0.999536713688708 hm5C_site_19676 DeepMRMD:1;iRNA_m5C:0.999536713688708 19677 chr10 5791144 5791144 1 + G C CESC 5791136 + 5791116 5791156 41 CTTACGTCCAAATCCGAGATCTCCACGGGATCCTCAGGACT CTTACGTCCAAATCCGAGATCTCCACGGCATCCTCAGGACT < 41bp 1 0.537730654003529 1 0.532480418682098 experiment 0.924538691992941 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM208B ENSG00000108021 CDS Human protein_coding chr10:5791136 chr10:5791144 synonymous SNV . 0 29 hm5C_associated_SNPs_18332 0 0 1 0 0 Nucleus 1 0.500231644427178 0.935039162635804 0.999536711145644 hm5C_site_19677 DeepMRMD:0.935039162635804;iRNA_m5C:0.999536711145644 19678 chr17 78319224 78319224 1 + C T CESC 78319214 + 78319194 78319234 41 CCTGCTGCTCCAGAGGGTGCCCTTCAATGTCGACTTTGATA CCTGCTGCTCCAGAGGGTGCCCTTCAATGTTGACTTTGATA < 41bp 1 0.00368121681278305 1 0.0440967082977295 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78319214 chr17:78319224 synonymous SNV . 0 31 hm5C_associated_SNPs_18333 0 0 1 0 0 Nucleus 1 0.500231643930958 1 0.999536712138083 hm5C_site_19678 DeepMRMD:1;iRNA_m5C:0.999536712138083 19679 chr1 33147407 33147407 1 + G A CESC 33147402 - 33147382 33147422 41 AACAGCAAAAAACTTCTTAGCAAAGGATCACTAAGTACCCT AACAGCAAAAAACTTTTTAGCAAAGGATCACTAAGTACCCT < 41bp 1 0.572663485032526 1 0.73883193731308 experiment 0.854673029934948 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNC ENSG00000162520 CDS Human protein_coding chr1:33147402 chr1:33147407 synonymous SNV . 0 16 hm5C_associated_SNPs_18334 0 0 0 0 1 Cytosol 1 0.500231643925047 0.52233612537384 0.999536712149907 hm5C_site_19679 DeepMRMD:0.52233612537384;iRNA_m5C:0.999536712149907 19680 chr1 117626692 117626692 1 + G A CESC 117626677 + 117626657 117626697 41 TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTAATCCA < 41bp 1 0.134167368926448 1 0.088619738817215 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117626677 chr1:117626692 synonymous SNV . 0 36 hm5C_associated_SNPs_18335 0 0 1 0 1 Nucleus 1 0.500231645325617 1 0.999536709348766 hm5C_site_19680 DeepMRMD:1;iRNA_m5C:0.999536709348766 19681 chr4 56230311 56230311 1 + C T CESC 56230318 + 56230298 56230338 41 TACGAAGACTCTTCGAGTGCCTCTACGTCAGTGTCTTCTCC TACGAAGACTCTTTGAGTGCCTCTACGTCAGTGTCTTCTCC < 41bp 1 0.505357396652724 1 0.186865955591202 experiment 0.989285206694553 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56230318 chr4:56230311 synonymous SNV . 0 14 hm5C_associated_SNPs_18336 0 0 1 0 1 Ribosome 1 0.500231643921051 1 0.999536712157899 hm5C_site_19681 DeepMRMD:1;iRNA_m5C:0.999536712157899 19682 chr7 101837145 101837145 1 + C T CESC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGTACCGTCCGAGGGCGCTGGGACA < 41bp 1 0.0181393483226693 1 0.114587038755417 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837145 nonsynonymous SNV 0.953 1 19 hm5C_associated_SNPs_18337 0 0 1 0 2 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19682 DeepMRMD:1;iRNA_m5C:0.999536712157815 19683 chr7 101837145 101837145 1 + C T CESC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGTACCGTCCGAGGGCGCTGGGACAC < 41bp 1 0.121901218857896 1 0.444534957408905 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837145 nonsynonymous SNV 0.953 1 18 hm5C_associated_SNPs_18338 0 0 1 0 2 Exosome 1 0.50023255010071 1 0.999534899798581 hm5C_site_19683 DeepMRMD:1;iRNA_m5C:0.999534899798581 19684 chr12 31244671 31244671 1 + C T CESC 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATTAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG < 41bp 1 0.563646283246925 1 0.419142127037048 experiment 0.872707433506149 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244671 stopgain 0.987 1 5 hm5C_associated_SNPs_18339 0 0 1 0 1 Cytosol 1 0.500231643921028 1 0.999536712157943 hm5C_site_19684 DeepMRMD:1;iRNA_m5C:0.999536712157943 19685 chr12 31244671 31244671 1 + C T CESC 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT TAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT < 41bp 1 0.240247380595064 1 0.0578725934028625 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244671 stopgain 0.987 1 1 hm5C_associated_SNPs_18340 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_19685 DeepMRMD:1;iRNA_m5C:0.999536712157815 19686 chr18 29171890 29171890 1 + C G CESC 29171892 + 29171872 29171912 41 TCTCATCGTCTGCTCCTCCTCTGCCTTGCTGGACTGGTATT TCTCATCGTCTGCTCCTCGTCTGCCTTGCTGGACTGGTATT < 41bp 1 0.458196166286543 1 0.174120217561722 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTR ENSG00000118271 CDS Human protein_coding chr18:29171892 chr18:29171890 nonsynonymous SNV 0.416 1 19 hm5C_associated_SNPs_18341 0 0 1 0 1 cytosol 1 0.500231643088071 1 0.999536713823858 hm5C_site_19686 DeepMRMD:1;iRNA_m5C:0.999536713823858 19687 chr1 145115802 145115802 1 + G C CESC 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTACTTCAACATGCATTCCACTTATGCCAAACTT < 41bp 1 0.0428196526562986 1 0.0602039992809296 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115802 . . 0 14 hm5C_associated_SNPs_18342 0 0 1 0 1 Cytosol 1 0.500231643890945 1 0.99953671221811 hm5C_site_19687 DeepMRMD:1;iRNA_m5C:0.99953671221811 19688 chr17 35346666 35346666 1 + G C CESC 35346663 + 35346643 35346683 41 TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT TCTATCGAGTTCTTGGCAAACCTCAGCCAGCAGCTCAGCCT < 41bp 1 0.464274922771437 1 0.0423479974269867 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35346663 chr17:35346666 nonsynonymous SNV 0.919 1 24 hm5C_associated_SNPs_18343 0 0 0 1 1 chromatin 1 0.500231734180868 1 0.999536531638264 hm5C_site_19688 DeepMRMD:1;iRNA_m5C:0.999536531638264 19689 chr19 58906057 58906057 1 + G A CESC 58906069 + 58906049 58906089 41 GGCTCCTCGAACTCCTATGCCATTAAGAAGAAGGACGAGCT GGCTCCTCAAACTCCTATGCCATTAAGAAGAAGGACGAGCT < 41bp 1 0.176598331355957 1 0.0561041235923767 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906069 chr19:58906057 synonymous SNV . 0 9 hm5C_associated_SNPs_18344 0 0 1 0 1 Ribosome 1 0.500231643921075 1 0.999536712157849 hm5C_site_19689 DeepMRMD:1;iRNA_m5C:0.999536712157849 19690 chr17 35346678 35346678 1 + C T CESC 35346663 + 35346643 35346683 41 TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTTAGCCT < 41bp 1 0.559759148343467 1 0.0396811068058014 experiment 0.880481703313066 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35346663 chr17:35346678 stopgain 0.030 0 36 hm5C_associated_SNPs_18345 0 0 0 2 1 chromatin 1 0.50023164393774 1 0.99953671212452 hm5C_site_19690 DeepMRMD:1;iRNA_m5C:0.99953671212452 19691 chr3 9784724 9784724 1 + G A CESC 9784735 + 9784715 9784755 41 GATGATTTTGAGGAGGACTTCAACCTCATCGTCAGCAACTG GATGATTTTAAGGAGGACTTCAACCTCATCGTCAGCAACTG < 41bp 1 0.240169480676645 1 0.230959862470627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9784735 chr3:9784724 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_18347 0 0 1 0 1 Nucleus 1 0.500231606895914 1 0.999536786208172 hm5C_site_19691 DeepMRMD:1;iRNA_m5C:0.999536786208172 19692 chr11 68125245 68125245 1 + G T CESC 68125248 + 68125228 68125268 41 TGACCATCGACCTGGAGGAGCAGAAGCTCTACTGGGCTGAC TGACCATCGACCTGGAGTAGCAGAAGCTCTACTGGGCTGAC < 41bp 1 0.570289056171664 1 0.727347493171692 experiment 0.859421887656672 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68125248 chr11:68125245 stopgain 0.999 0 18 hm5C_associated_SNPs_18348 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643600081 0.545305013656616 0.999536712799839 hm5C_site_19692 DeepMRMD:0.545305013656616;iRNA_m5C:0.999536712799839 19693 chr19 18254649 18254649 1 + C G CESC 18254659 + 18254639 18254679 41 CAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC CAGCCCATCTGTCCTGAATACCATCAGCCTGGACACAATGC < 41bp 1 0.0159584640444964 1 0.0138346552848816 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18254659 chr19:18254649 nonsynonymous SNV 0.038 0 11 hm5C_associated_SNPs_18350 0 0 1 0 1 Cytosol 1 0.500231643921137 1 0.999536712157727 hm5C_site_19693 DeepMRMD:1;iRNA_m5C:0.999536712157727 19694 chr3 48501272 48501272 1 + G A CESC 48501254 + 48501234 48501274 41 CATCCCTAAGCCTTTGCCACCTCCTGAGTAGTAGTTCTGAG CATCCCTAAGCCTTTGCCACCTCCTGAGTAGTAGTTCTAAG < 41bp 1 0.20755780131565 1 0.20822149515152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48501254 chr3:48501272 nonsynonymous SNV 0.989 3 39 hm5C_associated_SNPs_18351 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_19694 DeepMRMD:1;iRNA_m5C:0.999536712157816 19695 chrX 73043756 73043756 1 + G A CESC 73043738 - 73043718 73043758 41 TTCTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAAT TTTTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAAT < 41bp 1 0.0633725491673816 1 0.240299433469772 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043738 chrX:73043756 . . 0 3 hm5C_associated_SNPs_18352 0 0 1 1 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_19695 DeepMRMD:1;iRNA_m5C:0.999536712157814 19696 chrX 73043756 73043756 1 + G A CESC 73043746 - 73043726 73043766 41 TGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGGAT TGATTACTTTTTGTGGGGCTCGGAACTACATGCCCTAGGAT < 41bp 1 0.280522624288219 1 0.786957263946533 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043746 chrX:73043756 . . 0 11 hm5C_associated_SNPs_18353 0 0 1 1 0 unknown 1 0.500231643921092 0.426085472106934 0.999536712157815 hm5C_site_19696 DeepMRMD:0.426085472106934;iRNA_m5C:0.999536712157815 19697 chrX 73043756 73043756 1 + G A CESC 73043748 - 73043728 73043768 41 GGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGG GGTGATTACTTTTTGTGGGGCTCGGAACTACATGCCCTAGG < 41bp 1 0.269697093183617 1 0.21326008439064 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043748 chrX:73043756 . . 0 13 hm5C_associated_SNPs_18354 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19697 DeepMRMD:1;iRNA_m5C:0.999536712157815 19698 chr17 41154798 41154798 1 + G C CESC 41154779 + 41154759 41154799 41 ACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGA ACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGACA < 41bp 1 0.4966246743986 1 0.40775939822197 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154779 chr17:41154798 nonsynonymous SNV 0.985 1 40 hm5C_associated_SNPs_18355 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19698 DeepMRMD:1;iRNA_m5C:0.999536712157815 19699 chr7 45662258 45662258 1 + C G CESC 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTGACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.468490072765682 1 0.545621931552887 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662258 nonsynonymous SNV 0.997 5 5 hm5C_associated_SNPs_18356 0 0 1 0 2 Nucleus 1 0.500231643946986 0.908756136894226 0.999536712106029 hm5C_site_19699 DeepMRMD:0.908756136894226;iRNA_m5C:0.999536712106029 19700 chr3 184040704 184040704 1 + G A CESC 184040721 + 184040701 184040741 41 CCAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA CCAAAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA < 41bp 1 0.648864143941502 1 0.338058412075043 experiment 0.702271712116997 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184040721 chr3:184040704 nonsynonymous SNV 0.979 3 4 hm5C_associated_SNPs_18360 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19700 DeepMRMD:1;iRNA_m5C:0.999536712157815 19701 chr1 145584227 145584227 1 + G A CESC 145584230 + 145584210 145584250 41 GCTCATCAGATGAGGAGGATCTGCCCCCTACCAAGAAGCAC GCTCATCAGATGAGGAGAATCTGCCCCCTACCAAGAAGCAC < 41bp 1 0.226000356860881 1 0.419209510087967 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIAS3 ENSG00000131788 CDS Human protein_coding chr1:145584230 chr1:145584227 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_18361 0 0 0 0 1 chromatin 1 0.50023165449389 1 0.999536691012221 hm5C_site_19701 DeepMRMD:1;iRNA_m5C:0.999536691012221 19702 chr17 27064452 27064452 1 + C T CESC 27064436 + 27064416 27064456 41 TCTACTCAGCCTGGAGCCTGCCCAGCGGCCACCACTCAGCC TCTACTCAGCCTGGAGCCTGCCCAGCGGCCACCACTTAGCC < 41bp 1 0.226494261843071 1 0.358699023723602 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064436 chr17:27064452 synonymous SNV . 0 37 hm5C_associated_SNPs_18362 0 0 0 0 0 Nucleus 1 0.500231668690442 1 0.999536662619115 hm5C_site_19702 DeepMRMD:1;iRNA_m5C:0.999536662619115 19703 chr9 5770130 5770130 1 + G A CESC 5770122 + 5770102 5770142 41 TAAAGTCTCAATCAGCTGACCCATTTTTGAACCTTGAGATG TAAAGTCTCAATCAGCTGACCCATTTTTAAACCTTGAGATG < 41bp 1 0.0364315046941508 1 0.0894494950771332 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIC1 ENSG00000107036 CDS Human protein_coding chr9:5770122 chr9:5770130 synonymous SNV . 0 29 hm5C_associated_SNPs_18363 0 0 1 0 1 Nucleus 1 0.500233320961524 1 0.999533358076952 hm5C_site_19703 DeepMRMD:1;iRNA_m5C:0.999533358076952 19704 chr9 5770130 5770130 1 + G A CESC 5770123 + 5770103 5770143 41 AAAGTCTCAATCAGCTGACCCATTTTTGAACCTTGAGATGG AAAGTCTCAATCAGCTGACCCATTTTTAAACCTTGAGATGG < 41bp 1 0.0486202270682644 1 0.0460381805896759 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIC1 ENSG00000107036 CDS Human protein_coding chr9:5770123 chr9:5770130 synonymous SNV . 0 28 hm5C_associated_SNPs_18364 0 0 1 0 1 Nucleus 1 0.500231643921351 1 0.999536712157299 hm5C_site_19704 DeepMRMD:1;iRNA_m5C:0.999536712157299 19705 chr16 50100092 50100092 1 + C T CESC 50100099 + 50100079 50100119 41 CAGTTCTCCCCTACGGGCGACTGTCAGGCCGAGGCGGCTGC CAGTTCTCCCCTATGGGCGACTGTCAGGCCGAGGCGGCTGC < 41bp 1 0.130648719841805 1 0.0910870134830475 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50100099 chr16:50100092 nonsynonymous SNV 0.830 1 14 hm5C_associated_SNPs_18365 0 0 1 0 1 Ribosome 1 0.500231436914798 1 0.999537126170404 hm5C_site_19705 DeepMRMD:1;iRNA_m5C:0.999537126170404 19706 chr17 29560168 29560168 1 + G A CESC 29560175 + 29560155 29560195 41 TGGTCACAATGATGGGTGATCAAGGAGAACTCCCTATAGCG TGGTCACAATGATAGGTGATCAAGGAGAACTCCCTATAGCG < 41bp 1 0.422526339685826 1 0.720620930194855 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29560175 chr17:29560168 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_18366 0 0 1 0 1 Nucleus 1 0.500231643921093 0.55875813961029 0.999536712157814 hm5C_site_19706 DeepMRMD:0.55875813961029;iRNA_m5C:0.999536712157814 19707 chr20 47895230 47895230 1 + G C CESC 47895210 + 47895190 47895230 41 GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGG GCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGC < 41bp 1 0.0683908598591912 1 0.078784167766571 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZFAS1 ENSG00000177410 ncRNA_exonic Human antisense chr20:47895210 chr20:47895230 . . 0 41 hm5C_associated_SNPs_18367 0 0 1 0 2 unknown 1 0.500232870558211 1 0.999534258883578 hm5C_site_19707 DeepMRMD:1;iRNA_m5C:0.999534258883578 19708 chr11 5624570 5624570 1 + C T CESC 5624588 + 5624568 5624608 41 TACGAGAAGAGGTGACCTGCCCTATCTGCCTGGAGCTCCTA TATGAGAAGAGGTGACCTGCCCTATCTGCCTGGAGCTCCTA < 41bp 1 0.133470277189681 1 0.0744525492191315 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5624588 chr11:5624570 stopgain 0.851 0 3 hm5C_associated_SNPs_18368 0 0 0 0 1 unknown 1 0.500231644087007 1 0.999536711825985 hm5C_site_19708 DeepMRMD:1;iRNA_m5C:0.999536711825985 19709 chr22 21288098 21288098 1 + G T CESC 21288090 + 21288070 21288110 41 TCCAAGCCCACCAATGGGATCTGTCTCAGCACCCAACCTGC TCCAAGCCCACCAATGGGATCTGTCTCATCACCCAACCTGC < 41bp 1 0.0894185746841775 1 0.124532461166382 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRKL ENSG00000099942 CDS Human protein_coding chr22:21288090 chr22:21288098 nonsynonymous SNV 0.999 0 29 hm5C_associated_SNPs_18369 0 0 1 0 1 Nucleus 1 0.50023156730262 1 0.99953686539476 hm5C_site_19709 DeepMRMD:1;iRNA_m5C:0.99953686539476 19710 chr22 21288098 21288098 1 + G T CESC 21288099 + 21288079 21288119 41 ACCAATGGGATCTGTCTCAGCACCCAACCTGCCTACAGCAG ACCAATGGGATCTGTCTCATCACCCAACCTGCCTACAGCAG < 41bp 1 0.432860255264113 1 0.347251534461975 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRKL ENSG00000099942 CDS Human protein_coding chr22:21288099 chr22:21288098 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_18370 0 0 1 0 1 Nucleus 1 0.500231643923918 1 0.999536712152164 hm5C_site_19710 DeepMRMD:1;iRNA_m5C:0.999536712152164 19711 chr10 123845436 123845436 1 + C T CESC 123845420 + 123845400 123845440 41 GCTGCTGAGACTGGTGGCAGCGCTGGTGCAGGAGACCCAGG GCTGCTGAGACTGGTGGCAGCGCTGGTGCAGGAGACTCAGG < 41bp 1 0.330154516227996 1 0.671360909938812 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TACC2 ENSG00000138162 CDS Human protein_coding chr10:123845420 chr10:123845436 nonsynonymous SNV 0.004 0 37 hm5C_associated_SNPs_18371 0 0 0 0 0 Cytoplasm 1 0.50023166800477 0.657278180122376 0.99953666399046 hm5C_site_19711 DeepMRMD:0.657278180122376;iRNA_m5C:0.99953666399046 19712 chr2 242431061 242431061 1 + C T CESC 242431077 + 242431057 242431097 41 CCAGCGTGTCCAGGGCAGACCACAGTGCAGCTGTCGAGGTA CCAGTGTGTCCAGGGCAGACCACAGTGCAGCTGTCGAGGTA < 41bp 1 0.603553076519294 1 0.238635629415512 experiment 0.792893846961412 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242431077 chr2:242431061 synonymous SNV . 0 5 hm5C_associated_SNPs_18372 0 0 0 0 1 Nucleus 1 0.500231643760488 1 0.999536712479024 hm5C_site_19712 DeepMRMD:1;iRNA_m5C:0.999536712479024 19713 chr6 32134501 32134501 1 + G A CESC 32134481 + 32134461 32134501 41 CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCG CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCA < 41bp 1 0.175395129475891 1 0.145566076040268 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134481 chr6:32134501 nonsynonymous SNV 0.977 3 41 hm5C_associated_SNPs_18373 0 0 1 0 2 chromatin 1 0.500231643730565 1 0.999536712538871 hm5C_site_19713 DeepMRMD:1;iRNA_m5C:0.999536712538871 19714 chr3 186503991 186503991 1 + G T CESC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCATATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT < 41bp 1 0.126999622749416 1 0.107707589864731 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186503991 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_18374 0 0 1 1 2 Nucleus 1 0.500230642842786 1 0.999538714314428 hm5C_site_19714 DeepMRMD:1;iRNA_m5C:0.999538714314428 19715 chr6 43188289 43188289 1 + C T CESC 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCCAGCCCACTGGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.506950627552672 1 0.454248875379562 experiment 0.986098744894657 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188289 synonymous SNV . 0 15 hm5C_associated_SNPs_18375 0 0 0 0 2 chromatin 1 0.500231634638759 1 0.999536730722483 hm5C_site_19715 DeepMRMD:1;iRNA_m5C:0.999536730722483 19716 chr4 103500180 103500180 1 + C T CESC 103500160 + 103500140 103500180 41 CTGGCAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC CTGGCAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAT < 41bp 1 0.575309365599053 1 0.417110562324524 experiment 0.849381268801893 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103500160 chr4:103500180 synonymous SNV . 0 41 hm5C_associated_SNPs_18377 0 0 0 0 1 Ribosome 1 0.500231644233886 1 0.999536711532228 hm5C_site_19716 DeepMRMD:1;iRNA_m5C:0.999536711532228 19717 chr1 109350120 109350120 1 + C T CESC 109350104 + 109350084 109350124 41 GTTTTTGTAATTGGAGGGATCACATACTCTGAAGTGCGTTG GTTTTTGTAATTGGAGGGATCACATACTCTGAAGTGTGTTG < 41bp 1 0.419538296848243 1 0.104000210762024 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109350104 chr1:109350120 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_18378 0 0 1 0 2 Nucleus 1 0.500231716759492 1 0.999536566481016 hm5C_site_19717 DeepMRMD:1;iRNA_m5C:0.999536566481016 19718 chrX 21874792 21874792 1 + C T CESC 21874808 + 21874788 21874828 41 GCAGCCGCTCTTCACGAACACGGGCTATGGCGACCACGACC GCAGTCGCTCTTCACGAACACGGGCTATGGCGACCACGACC < 41bp 1 0.635495907585038 1 0.637505769729614 experiment 0.729008184829923 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YY2 ENSG00000230797 CDS Human protein_coding chrX:21874808 chrX:21874792 nonsynonymous SNV 0.394 2 5 hm5C_associated_SNPs_18379 0 0 0 0 0 exosome 1 0.500231643586071 0.724988460540772 0.999536712827858 hm5C_site_19718 DeepMRMD:0.724988460540772;iRNA_m5C:0.999536712827858 19719 chr19 59059435 59059435 1 + G A CESC 59059447 + 59059427 59059467 41 CCTGGAGCGGCAGCACTGGACCATGACCAAGATCCAGAAGC CCTGGAGCAGCAGCACTGGACCATGACCAAGATCCAGAAGC < 41bp 1 0.158315637994978 1 0.0413950681686401 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59059447 chr19:59059435 nonsynonymous SNV 0.992 1 9 hm5C_associated_SNPs_18380 0 0 1 0 1 Cytosol 1 0.500226995456665 1 0.99954600908667 hm5C_site_19719 DeepMRMD:1;iRNA_m5C:0.99954600908667 19720 chr19 59059435 59059435 1 + G A CESC 59059448 + 59059428 59059468 41 CTGGAGCGGCAGCACTGGACCATGACCAAGATCCAGAAGCA CTGGAGCAGCAGCACTGGACCATGACCAAGATCCAGAAGCA < 41bp 1 0.587944566698511 1 0.21021381020546 experiment 0.824110866602977 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59059448 chr19:59059435 nonsynonymous SNV 0.992 1 8 hm5C_associated_SNPs_18381 0 0 1 0 1 Cytosol 1 0.500231667249417 1 0.999536665501167 hm5C_site_19720 DeepMRMD:1;iRNA_m5C:0.999536665501167 19721 chr4 77661610 77661610 1 + G A CESC 77661597 + 77661577 77661617 41 CCGCACACATCCAGTCTGGGCCGGAGGGGGCCCGGCCCAGG CCGCACACATCCAGTCTGGGCCGGAGGGGGCCCAGCCCAGG < 41bp 1 0.621720303673372 1 0.551969647407532 experiment 0.756559392653256 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661597 chr4:77661610 nonsynonymous SNV 0.008 0 34 hm5C_associated_SNPs_18382 0 0 0 0 0 Ribosome 1 0.500231643921092 0.896060705184936 0.999536712157815 hm5C_site_19721 DeepMRMD:0.896060705184936;iRNA_m5C:0.999536712157815 19722 chr4 77661610 77661610 1 + G A CESC 77661598 + 77661578 77661618 41 CGCACACATCCAGTCTGGGCCGGAGGGGGCCCGGCCCAGGC CGCACACATCCAGTCTGGGCCGGAGGGGGCCCAGCCCAGGC < 41bp 1 0.60729378221656 1 0.683451116085052 experiment 0.78541243556688 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661598 chr4:77661610 nonsynonymous SNV 0.008 0 33 hm5C_associated_SNPs_18383 0 0 0 0 0 Ribosome 1 0.50023164391296 0.633097767829896 0.999536712174079 hm5C_site_19722 DeepMRMD:0.633097767829896;iRNA_m5C:0.999536712174079 19723 chr4 77661610 77661610 1 + G A CESC 77661608 + 77661588 77661628 41 CAGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGG CAGTCTGGGCCGGAGGGGGCCCAGCCCAGGCAGCGCCTCGG < 41bp 1 0.155046795914004 1 0.42391449213028 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661608 chr4:77661610 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_18384 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_19723 DeepMRMD:1;iRNA_m5C:0.999536712157815 19724 chr4 77661610 77661610 1 + G A CESC 77661609 + 77661589 77661629 41 AGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGC AGTCTGGGCCGGAGGGGGCCCAGCCCAGGCAGCGCCTCGGC < 41bp 1 0.456242938352342 1 0.417416155338287 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661609 chr4:77661610 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_18385 0 0 0 0 0 Ribosome 1 0.500231483045039 1 0.999537033909921 hm5C_site_19724 DeepMRMD:1;iRNA_m5C:0.999537033909921 19725 chr4 77661610 77661610 1 + G A CESC 77661612 + 77661592 77661632 41 CTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGCTCT CTGGGCCGGAGGGGGCCCAGCCCAGGCAGCGCCTCGGCTCT < 41bp 1 0.363151953945235 1 0.283776313066483 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661612 chr4:77661610 nonsynonymous SNV 0.008 0 19 hm5C_associated_SNPs_18386 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19725 DeepMRMD:1;iRNA_m5C:0.999536712157815 19726 chr4 77661610 77661610 1 + G A CESC 77661613 + 77661593 77661633 41 TGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGCTCTT TGGGCCGGAGGGGGCCCAGCCCAGGCAGCGCCTCGGCTCTT < 41bp 1 0.503494999463388 1 0.298853874206543 experiment 0.993010001073224 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661613 chr4:77661610 nonsynonymous SNV 0.008 0 18 hm5C_associated_SNPs_18387 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19726 DeepMRMD:1;iRNA_m5C:0.999536712157815 19727 chr2 233681711 233681711 1 + G A CESC 233681725 + 233681705 233681745 41 AAAGGCGAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGTA AAAGGCAAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGTA < 41bp 1 0.131491962666504 1 0.177417516708374 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681725 chr2:233681711 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_18390 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19727 DeepMRMD:1;iRNA_m5C:0.999536712157815 19728 chr2 233681711 233681711 1 + G A CESC 233681730 + 233681710 233681750 41 CGAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGTATGTAT CAAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGTATGTAT < 41bp 1 0.438647620898232 1 0.494018405675888 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681730 chr2:233681711 nonsynonymous SNV 0.998 2 2 hm5C_associated_SNPs_18391 0 0 1 0 0 Nucleus 1 0.500129617087933 1 0.999740765824134 hm5C_site_19728 DeepMRMD:1;iRNA_m5C:0.999740765824134 19729 chr8 21957333 21957333 1 + G A CESC 21957337 + 21957317 21957357 41 CACAGACCGGCAGCCTGAAGCCCCCGGGGACAACCCCCACA CACAGACCGGCAGCCTAAAGCCCCCGGGGACAACCCCCACA < 41bp 1 0.323976218174218 1 0.12311577796936 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21957337 chr8:21957333 nonsynonymous SNV 0.007 2 17 hm5C_associated_SNPs_18392 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19729 DeepMRMD:1;iRNA_m5C:0.999536712157815 19730 chr11 61503241 61503241 1 + G C CESC 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTCAGCG < 41bp 1 0.246299693385645 1 0.0673165023326874 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503241 nonsynonymous SNV 0.997 4 37 hm5C_associated_SNPs_18393 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921105 1 0.99953671215779 hm5C_site_19730 DeepMRMD:1;iRNA_m5C:0.99953671215779 19731 chr12 49725173 49725173 1 + G C CESC 49725165 + 49725145 49725185 41 CTGCACCAACCCTGTGGCTACATTACTCGAATGGCAGGATG CTGCACCAACCCTGTGGCTACATTACTCCAATGGCAGGATG < 41bp 1 0.242458431594673 1 0.055341511964798 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TROAP ENSG00000135451 CDS Human protein_coding chr12:49725165 chr12:49725173 nonsynonymous SNV 0.820 3 29 hm5C_associated_SNPs_18394 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_19731 DeepMRMD:1;iRNA_m5C:0.999536712157816 19732 chr12 51108341 51108341 1 + G T CESC 51108355 + 51108335 51108375 41 ATACATGTGTGACAAACTTGCCAAAGCCCCGGCAAAAACAA ATACATTTGTGACAAACTTGCCAAAGCCCCGGCAAAAACAA < 41bp 1 0.168352257301473 1 0.228527903556824 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51108355 chr12:51108341 nonsynonymous SNV 0.999 2 7 hm5C_associated_SNPs_18395 0 0 0 0 1 Nucleus 1 0.500231660515811 1 0.999536678968378 hm5C_site_19732 DeepMRMD:1;iRNA_m5C:0.999536678968378 19733 chr11 66610676 66610676 1 + G A CESC 66610663 + 66610643 66610683 41 GTGCTGTGGCTGCAGGAGGTCTCCAACCTGTCAGAGTGGCT GTGCTGTGGCTGCAGGAGGTCTCCAACCTGTCAAAGTGGCT < 41bp 1 0.596481385656835 1 0.865642786026001 experiment 0.807037228686331 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66610663 chr11:66610676 nonsynonymous SNV 0.970 2 34 hm5C_associated_SNPs_18396 0 0 1 0 1 Endoplasmic reticulum 1 0.500266741778858 0.268714427947998 0.999466516442284 hm5C_site_19733 DeepMRMD:0.268714427947998;iRNA_m5C:0.999466516442284 19734 chr9 110086276 110086276 1 + G A CESC 110086266 + 110086246 110086286 41 TGCTTCCAGCGTTACTACAGCAGATAGGTCGAGAGAATCCT TGCTTCCAGCGTTACTACAGCAGATAGGTCAAGAGAATCCT < 41bp 1 0.267593218169053 1 0.157477259635925 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110086266 chr9:110086276 nonsynonymous SNV 0.996 3 31 hm5C_associated_SNPs_18397 0 0 1 0 1 Ribosome 1 0.500231025874608 1 0.999537948250784 hm5C_site_19734 DeepMRMD:1;iRNA_m5C:0.999537948250784 19735 chr11 45924612 45924612 1 + G A CESC 45924592 + 45924572 45924612 41 CGTCTCCTCGCCCTATGAGTCGGCCATCGGAGAGGAATATG CGTCTCCTCGCCCTATGAGTCGGCCATCGGAGAGGAATATA < 41bp 1 0.314600965825005 1 0.503069639205933 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924592 chr11:45924612 nonsynonymous SNV 0.998 1 41 hm5C_associated_SNPs_18398 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643760551 0.993860721588134 0.999536712478898 hm5C_site_19735 DeepMRMD:0.993860721588134;iRNA_m5C:0.999536712478898 19736 chr11 61490980 61490980 1 + C T CESC 61490991 + 61490971 61491011 41 CCCACGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG CCCACGGGCTGCACCTTTGTCAAGCTGAGAGCCACCAAGAG < 41bp 1 0.435056549536837 1 0.882670402526855 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490991 chr11:61490980 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_18399 0 0 0 0 2 Endoplasmic reticulum 1 0.500230873562846 0.23465919494629 0.999538252874308 hm5C_site_19736 DeepMRMD:0.23465919494629;iRNA_m5C:0.999538252874308 19737 chr19 54967167 54967167 1 + T C CESC 54967152 + 54967132 54967172 41 TGCTGTATTCTCAGGCTGACCCGGGAGCCTGTGGCTGAGAG TGCTGTATTCTCAGGCTGACCCGGGAGCCTGTGGCCGAGAG < 41bp 1 0.565573208252725 1 0.803675651550293 experiment 0.868853583494551 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54967152 chr19:54967167 synonymous SNV . 0 36 hm5C_associated_SNPs_18400 0 0 1 0 1 chromatin 1 0.500230416914686 0.392648696899414 0.999539166170629 hm5C_site_19737 DeepMRMD:0.392648696899414;iRNA_m5C:0.999539166170629 19738 chr6 117859954 117859954 1 + G A CESC 117859950 + 117859930 117859970 41 ACAGTAGCAACAACCACAAACCACGAGAGTGGCTGGAGATC ACAGTAGCAACAACCACAAACCACAAGAGTGGCTGGAGATC < 41bp 1 0.406639146809815 1 0.280404210090637 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117859950 chr6:117859954 nonsynonymous SNV 0.436 1 25 hm5C_associated_SNPs_18401 0 0 0 0 1 Endoplasmic reticulum 1 0.500277930474098 1 0.999444139051804 hm5C_site_19738 DeepMRMD:1;iRNA_m5C:0.999444139051804 19739 chr17 4859382 4859382 1 + C T CESC 4859363 + 4859343 4859383 41 CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGTA < 41bp 1 0.176514666336323 1 0.0893726050853729 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859363 chr17:4859382 synonymous SNV . 0 40 hm5C_associated_SNPs_18405 0 0 1 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19739 DeepMRMD:1;iRNA_m5C:0.999536712157815 19740 chr17 4859382 4859382 1 + C T CESC 4859364 + 4859344 4859384 41 CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGTAA < 41bp 1 0.236664883960922 1 0.294217258691788 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859364 chr17:4859382 synonymous SNV . 0 39 hm5C_associated_SNPs_18406 0 0 1 0 2 nucleus 1 0.500231643920953 1 0.999536712158093 hm5C_site_19740 DeepMRMD:1;iRNA_m5C:0.999536712158093 19741 chr17 4859382 4859382 1 + C T CESC 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCCGTTGAGAAGAAGGCCTGTAACTGTCTGCTGCTGA < 41bp 1 0.194430405581885 1 0.0749082863330841 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859382 synonymous SNV . 0 25 hm5C_associated_SNPs_18407 0 0 1 0 2 nucleus 1 0.500231630115108 1 0.999536739769785 hm5C_site_19741 DeepMRMD:1;iRNA_m5C:0.999536739769785 19742 chr17 4859382 4859382 1 + C T CESC 4859379 + 4859359 4859399 41 CAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAA CAGGCCGTTGAGAAGAAGGCCTGTAACTGTCTGCTGCTGAA < 41bp 1 0.521347311179819 1 0.0727366209030151 experiment 0.957305377640362 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859379 chr17:4859382 synonymous SNV . 0 24 hm5C_associated_SNPs_18408 0 0 1 0 2 nucleus 1 0.500231626350002 1 0.999536747299997 hm5C_site_19742 DeepMRMD:1;iRNA_m5C:0.999536747299997 19743 chr17 4859382 4859382 1 + C T CESC 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA GTTGAGAAGAAGGCCTGTAACTGTCTGCTGCTGAAGGTCAA < 41bp 1 0.571238223876254 1 0.1211818754673 experiment 0.857523552247492 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859382 synonymous SNV . 0 18 hm5C_associated_SNPs_18409 0 0 1 0 2 nucleus 1 0.500231644497861 1 0.999536711004277 hm5C_site_19743 DeepMRMD:1;iRNA_m5C:0.999536711004277 19744 chr17 4859382 4859382 1 + C T CESC 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGTAACTGTCTGCTGCTGAAGGTCAACCAGATC < 41bp 1 0.418416555325616 1 0.276124775409698 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859382 synonymous SNV . 0 11 hm5C_associated_SNPs_18411 0 0 1 0 2 nucleus 1 0.500231643920656 1 0.999536712158687 hm5C_site_19744 DeepMRMD:1;iRNA_m5C:0.999536712158687 19745 chr20 61291826 61291826 1 + C T CESC 61291833 + 61291813 61291853 41 GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT GGCTTCCTGGGCTTTGGGGCCGCTGCTTTCTTCACCGCCGT < 41bp 1 0.425805406602235 1 0.392410486936569 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291833 chr20:61291826 nonsynonymous SNV 0.027 1 14 hm5C_associated_SNPs_18412 0 0 0 1 2 Endoplasmic reticulum 1 0.500231643921268 1 0.999536712157464 hm5C_site_19745 DeepMRMD:1;iRNA_m5C:0.999536712157464 19746 chr19 18543848 18543848 1 + G A CESC 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATCGGGCAGGGCGCCGGCAGGACTAATGTGAGTG < 41bp 1 0.146451934230158 1 0.340990543365479 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543848 nonsynonymous SNV 0.993 0 29 hm5C_associated_SNPs_18413 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19746 DeepMRMD:1;iRNA_m5C:0.999536712157815 19747 chr19 18543848 18543848 1 + G A CESC 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATCGGGCAGGGCGCCGGCAGGACTAATGTGAGTGG < 41bp 1 0.654731705783085 1 0.517574191093445 experiment 0.69053658843383 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543848 nonsynonymous SNV 0.993 0 28 hm5C_associated_SNPs_18414 0 0 1 0 2 Ribosome 1 0.500231643878108 0.96485161781311 0.999536712243785 hm5C_site_19747 DeepMRMD:0.96485161781311;iRNA_m5C:0.999536712243785 19748 chrX 73044134 73044134 1 + C G CESC 73044128 - 73044108 73044148 41 AAGTAGGAAAATTTGAATAACAATGATTATCTTTTGAATAC AAGTAGGAAAATTTCAATAACAATGATTATCTTTTGAATAC < 41bp 1 0.0999071170829268 1 0.0863818228244781 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044128 chrX:73044134 . . 0 15 hm5C_associated_SNPs_18415 0 0 1 0 0 unknown 1 0.500231481582039 1 0.999537036835922 hm5C_site_19748 DeepMRMD:1;iRNA_m5C:0.999537036835922 19749 chr6 110062692 110062692 1 + G C CESC 110062698 + 110062678 110062718 41 CACTCTAATAGCTAGAAGATCCAGTAAATTTGCTGGCACCC CACTCTAATAGCTACAAGATCCAGTAAATTTGCTGGCACCC < 41bp 1 0.173826227901611 1 0.900284647941589 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110062698 chr6:110062692 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_18416 0 0 0 0 2 Cytosol 1 0.500231643922757 0.199430704116822 0.999536712154486 hm5C_site_19749 DeepMRMD:0.199430704116822;iRNA_m5C:0.999536712154486 19750 chr11 73021101 73021101 1 + C T CESC 73021096 + 73021076 73021116 41 CCAGATATCGCCTCAGAGACCCTGACGCTTCTCAGTTTCCT CCAGATATCGCCTCAGAGACCCTGATGCTTCTCAGTTTCCT < 41bp 1 0.115233654504725 1 0.0276980400085449 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73021096 chr11:73021101 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_18417 0 0 0 0 0 Cytosol 1 0.500231643921085 1 0.999536712157829 hm5C_site_19750 DeepMRMD:1;iRNA_m5C:0.999536712157829 19751 chr2 15732065 15732065 1 + C T CESC 15732066 + 15732046 15732086 41 GACGGGGTGAAGATGGCGGCCTTCTCCGGTGCGTTTGTGGA GACGGGGTGAAGATGGCGGTCTTCTCCGGTGCGTTTGTGGA < 41bp 1 0.362775406120684 1 0.0958719253540039 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15732066 chr2:15732065 nonsynonymous SNV 0.994 1 20 hm5C_associated_SNPs_18418 0 0 1 0 1 Cytosol 1 0.500231643930541 1 0.999536712138918 hm5C_site_19751 DeepMRMD:1;iRNA_m5C:0.999536712138918 19752 chr19 10794119 10794119 1 + C A CESC 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCACTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG < 41bp 1 0.409855147276691 1 0.081492006778717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794119 synonymous SNV . 0 4 hm5C_associated_SNPs_18419 0 0 1 0 2 Cytosol 1 0.500231643921098 1 0.999536712157804 hm5C_site_19752 DeepMRMD:1;iRNA_m5C:0.999536712157804 19753 chr17 41570257 41570257 1 + C T CESC 41570239 + 41570219 41570259 41 GGAGCAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACCGG GGAGCAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACTGG < 41bp 1 0.426543674515076 1 0.653341472148895 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570239 chr17:41570257 nonsynonymous SNV 0.997 2 39 hm5C_associated_SNPs_18420 0 0 1 0 0 Cytosol 1 0.500231643921092 0.69331705570221 0.999536712157815 hm5C_site_19753 DeepMRMD:0.69331705570221;iRNA_m5C:0.999536712157815 19754 chr17 41570257 41570257 1 + C T CESC 41570240 + 41570220 41570260 41 GAGCAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACCGGG GAGCAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACTGGG < 41bp 1 0.314816644347521 1 0.782279014587402 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570240 chr17:41570257 nonsynonymous SNV 0.997 2 38 hm5C_associated_SNPs_18421 0 0 1 0 0 Cytosol 1 0.500230456731365 0.435441970825196 0.999539086537269 hm5C_site_19754 DeepMRMD:0.435441970825196;iRNA_m5C:0.999539086537269 19755 chr8 28574279 28574279 1 + G A CESC 28574271 + 28574251 28574291 41 CGTTTATGTTACAGAAAATGCAGACATCGCCTGCCTTTACG CGTTTATGTTACAGAAAATGCAGACATCACCTGCCTTTACG < 41bp 1 0.200264928211495 1 0.117244720458984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28574271 chr8:28574279 nonsynonymous SNV 0.979 5 29 hm5C_associated_SNPs_18422 0 0 1 0 0 Endoplasmic reticulum 1 0.500231645063824 1 0.999536709872352 hm5C_site_19755 DeepMRMD:1;iRNA_m5C:0.999536709872352 19756 chr17 45376746 45376746 1 + C T CESC 45376744 + 45376724 45376764 41 GGCTACTACTGCAACTGTACCACGCGTACTGACACCTGCAT GGCTACTACTGCAACTGTACCATGCGTACTGACACCTGCAT < 41bp 1 0.290072707766761 1 0.256591409444809 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376744 chr17:45376746 nonsynonymous SNV 0.407 4 23 hm5C_associated_SNPs_18423 0 0 0 0 1 cytosol 1 0.500238494902562 1 0.999523010194875 hm5C_site_19756 DeepMRMD:1;iRNA_m5C:0.999523010194875 19757 chr19 50385612 50385612 1 + G A CESC 50385593 + 50385573 50385613 41 GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGC GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCAC < 41bp 1 0.324008352643668 1 0.205682158470154 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385593 chr19:50385612 synonymous SNV . 0 40 hm5C_associated_SNPs_18424 0 0 1 0 1 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_19757 DeepMRMD:1;iRNA_m5C:0.999536712157815 19758 chr19 50385612 50385612 1 + G A CESC 50385594 + 50385574 50385614 41 CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGCC CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCACC < 41bp 1 0.501905916850749 1 0.313504159450531 experiment 0.996188166298501 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385594 chr19:50385612 synonymous SNV . 0 39 hm5C_associated_SNPs_18425 0 0 1 0 1 membrane 1 0.500231644358013 1 0.999536711283974 hm5C_site_19758 DeepMRMD:1;iRNA_m5C:0.999536711283974 19759 chr22 24583366 24583366 1 + C T CESC 24583360 + 24583340 24583380 41 GACGACTTCACCCTGCACAGCGGGCGCGTCCTGCCCCCAGG GACGACTTCACCCTGCACAGCGGGCGTGTCCTGCCCCCAGG < 41bp 1 0.692792142498111 1 0.639553844928741 experiment 0.614415715003777 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24583360 chr22:24583366 synonymous SNV . 0 27 hm5C_associated_SNPs_18426 0 0 0 0 1 Exosome 1 0.500231643921092 0.720892310142518 0.999536712157815 hm5C_site_19759 DeepMRMD:0.720892310142518;iRNA_m5C:0.999536712157815 19760 chr16 83948922 83948922 1 + C T CESC 83948906 + 83948886 83948926 41 AGAACGGGGCGGTGCTGTGGCGCATCAACTGGATGGCGGAT AGAACGGGGCGGTGCTGTGGCGCATCAACTGGATGGTGGAT < 41bp 1 0.397068674658469 1 0.166505038738251 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MLYCD ENSG00000103150 CDS Human protein_coding chr16:83948906 chr16:83948922 nonsynonymous SNV 0.628 5 37 hm5C_associated_SNPs_18427 0 0 0 0 0 nucleolus 1 0.500231643921093 1 0.999536712157815 hm5C_site_19760 DeepMRMD:1;iRNA_m5C:0.999536712157815 19761 chr4 3432494 3432494 1 + C T CESC 3432506 + 3432486 3432526 41 CTCCCTCGCGCAGGAGGGCACCGCCCAGATCTGGAAGAGGC CTCCCTCGTGCAGGAGGGCACCGCCCAGATCTGGAAGAGGC < 41bp 1 0.136793058924009 1 0.196747928857803 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3432506 chr4:3432494 nonsynonymous SNV 0.002 0 9 hm5C_associated_SNPs_18428 0 0 0 0 0 Nucleus 1 0.50023164392578 1 0.999536712148441 hm5C_site_19761 DeepMRMD:1;iRNA_m5C:0.999536712148441 19762 chr6 158492661 158492661 1 + G A CESC 158492660 + 158492640 158492680 41 AGCCATCGACACAGTGAAGACGGGCATGGGGGGCAAGGCGG AGCCATCGACACAGTGAAGACAGGCATGGGGGGCAAGGCGG < 41bp 1 0.670613600588044 1 0.494505107402802 experiment 0.658772798823912 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158492660 chr6:158492661 synonymous SNV . 0 22 hm5C_associated_SNPs_18429 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19762 DeepMRMD:1;iRNA_m5C:0.999536712157815 19763 chr11 66249801 66249801 1 + G A CESC 66249791 + 66249771 66249811 41 GCCTACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGGC GCCTACCACCTGTCCCGTGCCGCCTGGTACAGAGGCCTGGC < 41bp 1 0.58204068223723 1 0.113652795553207 experiment 0.83591863552554 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249791 chr11:66249801 nonsynonymous SNV 0.976 4 31 hm5C_associated_SNPs_18430 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19763 DeepMRMD:1;iRNA_m5C:0.999536712157815 19764 chr11 66249801 66249801 1 + G A CESC 66249793 + 66249773 66249813 41 CTACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGGCTG CTACCACCTGTCCCGTGCCGCCTGGTACAGAGGCCTGGCTG < 41bp 1 0.345729077753234 1 0.0569170713424683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249793 chr11:66249801 nonsynonymous SNV 0.976 4 29 hm5C_associated_SNPs_18431 0 0 1 0 0 Nucleus 1 0.500231643921136 1 0.999536712157728 hm5C_site_19764 DeepMRMD:1;iRNA_m5C:0.999536712157728 19765 chr11 66249801 66249801 1 + G A CESC 66249794 + 66249774 66249814 41 TACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGGCTGT TACCACCTGTCCCGTGCCGCCTGGTACAGAGGCCTGGCTGT < 41bp 1 0.677463127578248 1 0.480325281620026 experiment 0.645073744843504 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249794 chr11:66249801 nonsynonymous SNV 0.976 4 28 hm5C_associated_SNPs_18432 0 0 1 0 0 Nucleus 1 0.500231643908328 1 0.999536712183344 hm5C_site_19765 DeepMRMD:1;iRNA_m5C:0.999536712183344 19766 chr18 9182466 9182466 1 + T C CESC 9182456 + 9182436 9182476 41 CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAAATTCTG CAAATCTGGGTTCACAAAACCAATTCAGAGCGAAAATTCTG < 41bp 1 0.104936230976451 1 0.0529138147830963 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD12 ENSG00000101745 CDS Human protein_coding chr18:9182456 chr18:9182466 synonymous SNV . 0 31 hm5C_associated_SNPs_18434 0 0 1 0 2 Cytosol 1 0.50023132532179 1 0.99953734935642 hm5C_site_19766 DeepMRMD:1;iRNA_m5C:0.99953734935642 19767 chr3 126725011 126725011 1 + G A CESC 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCGTCTTCTACAACTGCAGCATCCACCAGTC < 41bp 1 0.292447749092541 1 0.202575534582138 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126725011 nonsynonymous SNV 0.997 1 31 hm5C_associated_SNPs_18435 0 0 1 0 2 Ribosome 1 0.500231644130814 1 0.999536711738372 hm5C_site_19767 DeepMRMD:1;iRNA_m5C:0.999536711738372 19768 chr6 44107311 44107311 1 + T A CESC 44107298 + 44107278 44107318 41 TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCAACGTGCTG < 41bp 1 0.297911270592636 1 0.100626140832901 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107298 chr6:44107311 nonsynonymous SNV 0.999 2 34 hm5C_associated_SNPs_18436 0 0 1 0 1 Ribosome 1 0.500238317958981 1 0.999523364082039 hm5C_site_19768 DeepMRMD:1;iRNA_m5C:0.999523364082039 19769 chrX 100088436 100088436 1 + C T CESC 100088446 + 100088426 100088466 41 AACATGGGGGCGGTTGTCCCCCAGGGATCCAGACAGGTATG AACATGGGGGTGGTTGTCCCCCAGGGATCCAGACAGGTATG < 41bp 1 0.625748899461036 1 0.59055894613266 experiment 0.748502201077927 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100088446 chrX:100088436 nonsynonymous SNV 0.876 4 11 hm5C_associated_SNPs_18437 0 0 1 0 1 Nucleus 1 0.500231643921014 0.81888210773468 0.999536712157971 hm5C_site_19769 DeepMRMD:0.81888210773468;iRNA_m5C:0.999536712157971 19770 chr17 3629160 3629160 1 + G A CESC 3629168 + 3629148 3629188 41 AGGCATCACTGCGCTTTGAGCACCGAGACTTACACTGGGGG AGGCATCACTGCACTTTGAGCACCGAGACTTACACTGGGGG < 41bp 1 0.365877254881838 1 0.295481473207474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HASPIN ENSG00000177602 CDS Human protein_coding chr17:3629168 chr17:3629160 nonsynonymous SNV 0.991 0 13 hm5C_associated_SNPs_18438 0 0 1 0 0 unknown 1 0.50023184180804 1 0.999536316383919 hm5C_site_19770 DeepMRMD:1;iRNA_m5C:0.999536316383919 19771 chr16 697471 697471 1 + G A CESC 697463 + 697443 697483 41 GTGTGAATGGCCGGCGGGCCCCCTCCACGTCCCCATCCTTC GTGTGAATGGCCGGCGGGCCCCCTCCACATCCCCATCCTTC < 41bp 1 0.122825456358706 1 0.0469447076320648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697463 chr16:697471 synonymous SNV . 0 29 hm5C_associated_SNPs_18439 0 0 1 0 1 Cytosol 1 0.500231646122635 1 0.99953670775473 hm5C_site_19771 DeepMRMD:1;iRNA_m5C:0.99953670775473 19772 chr14 56233178 56233178 1 + C T CESC 56233191 + 56233171 56233211 41 GACCAAGCGAGGCCATGCCTCCCTGGACTGCCTCAAGGTGT GACCAAGTGAGGCCATGCCTCCCTGGACTGCCTCAAGGTGT < 41bp 1 0.37054507897305 1 0.452786266803741 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233191 chr14:56233178 . . 0 8 hm5C_associated_SNPs_18440 0 0 0 0 0 unknown 1 0.500231643921083 1 0.999536712157834 hm5C_site_19772 DeepMRMD:1;iRNA_m5C:0.999536712157834 19773 chr20 3804636 3804636 1 + C T CESC 3804653 + 3804633 3804673 41 TTCCGCCTGGCAGCAGAGAACCCTTTCCAGGAGCCACGGAC TTCTGCCTGGCAGCAGAGAACCCTTTCCAGGAGCCACGGAC < 41bp 1 0.168007140854972 1 0.0462908446788788 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3804653 chr20:3804636 nonsynonymous SNV 0.632 2 4 hm5C_associated_SNPs_18441 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19773 DeepMRMD:1;iRNA_m5C:0.999536712157815 19774 chr7 143080071 143080071 1 + C T CESC 143080053 + 143080033 143080073 41 CTCCGGCTCAGAGCCAGACACAGTTCCATGTTCAGCCCCAG CTCCGGCTCAGAGCCAGACACAGTTCCATGTTCAGCCCTAG < 41bp 1 0.292815458101433 1 0.253543317317963 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZYX ENSG00000159840 CDS Human protein_coding chr7:143080053 chr7:143080071 stopgain 0.548 0 39 hm5C_associated_SNPs_18442 0 0 1 0 0 Ribosome 1 0.500231642569068 1 0.999536714861863 hm5C_site_19774 DeepMRMD:1;iRNA_m5C:0.999536714861863 19775 chr1 114483792 114483792 1 + C G CESC 114483796 + 114483776 114483816 41 CTTTCAGCATAAGAATCACACCTGCCTTGTTTTTGAAATGT CTTTCAGCATAAGAATGACACCTGCCTTGTTTTTGAAATGT < 41bp 1 0.025170440862522 1 0.136122703552246 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114483796 chr1:114483792 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_18443 0 0 1 0 0 Cytosol 1 0.500231699178008 1 0.999536601643985 hm5C_site_19775 DeepMRMD:1;iRNA_m5C:0.999536601643985 19776 chr6 31929372 31929372 1 + C G CESC 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTGAGGAGCAGTGGGCCATCCCTGTGGAC < 41bp 1 0.27195059529408 1 0.512403666973114 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929372 stopgain 0.904 0 15 hm5C_associated_SNPs_18444 0 0 1 0 2 chromatin 1 0.500231643061479 0.975192666053772 0.999536713877042 hm5C_site_19776 DeepMRMD:0.975192666053772;iRNA_m5C:0.999536713877042 19777 chr16 27374353 27374353 1 + G C CESC 27374351 + 27374331 27374371 41 TCCTCCGCCGAAATGTCCTCCAGCATGGGGCAGCTGCAGCC TCCTCCGCCGAAATGTCCTCCACCATGGGGCAGCTGCAGCC < 41bp 1 0.655769719856213 1 0.693694293498993 experiment 0.688460560287575 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IL4R ENSG00000077238 CDS Human protein_coding chr16:27374351 chr16:27374353 nonsynonymous SNV 0.175 3 23 hm5C_associated_SNPs_18445 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 0.612611413002014 0.999536712157815 hm5C_site_19777 DeepMRMD:0.612611413002014;iRNA_m5C:0.999536712157815 19778 chr2 99162457 99162457 1 + G C CESC 99162438 + 99162418 99162458 41 ATTCCATTTCTTAGGGCCCTCGTTTAAAGCAAGCAGTTTGA ATTCCATTTCTTAGGGCCCTCGTTTAAAGCAAGCAGTTTCA < 41bp 1 0.0233654576369491 1 0.148931473493576 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99162438 chr2:99162457 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_18447 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_19778 DeepMRMD:1;iRNA_m5C:0.999536712157816 19779 chr2 99162457 99162457 1 + G C CESC 99162451 + 99162431 99162471 41 GGGCCCTCGTTTAAAGCAAGCAGTTTGAAAGCAGATAAAAA GGGCCCTCGTTTAAAGCAAGCAGTTTCAAAGCAGATAAAAA < 41bp 1 0.0385269150437866 1 0.0887615084648132 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99162451 chr2:99162457 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_18448 0 0 0 0 2 Ribosome 1 0.500231643958518 1 0.999536712082963 hm5C_site_19779 DeepMRMD:1;iRNA_m5C:0.999536712082963 19780 chr6 47577036 47577036 1 + C G CESC 47577024 + 47577004 47577044 41 TGTTGTGCATTGTAGAAGCACTGAAAAAGGATCACGGGTAA TGTTGTGCATTGTAGAAGCACTGAAAAAGGATGACGGGTAA < 41bp 1 0.656221846364972 1 0.470941424369812 experiment 0.687556307270057 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47577024 chr6:47577036 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_18449 0 0 1 0 1 Cytosol 1 0.500231908187651 1 0.999536183624697 hm5C_site_19780 DeepMRMD:1;iRNA_m5C:0.999536183624697 19781 chr11 61491027 61491027 1 + G A CESC 61491024 + 61491004 61491044 41 ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCG ACCAAGAGGAGGCAGCGTAACCTACGGACCTACAACCTGCG < 41bp 1 0.0389838882651122 1 0.0690791606903076 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491024 chr11:61491027 synonymous SNV . 0 24 hm5C_associated_SNPs_18450 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921084 1 0.999536712157833 hm5C_site_19781 DeepMRMD:1;iRNA_m5C:0.999536712157833 19782 chr17 18638431 18638431 1 + G A CESC 18638429 + 18638409 18638449 41 TGACCTGCAAAGGCATCGACCAGAAAGGGGAGGAGCGCAGC TGACCTGCAAAGGCATCGACCAAAAAGGGGAGGAGCGCAGC < 41bp 1 0.656723512767374 1 0.680527150630951 experiment 0.686552974465252 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18638429 chr17:18638431 synonymous SNV . 0 23 hm5C_associated_SNPs_18451 0 0 0 1 0 Nucleus 1 0.500231643921092 0.638945698738098 0.999536712157815 hm5C_site_19782 DeepMRMD:0.638945698738098;iRNA_m5C:0.999536712157815 19783 chr19 58797541 58797541 1 + G T CESC 58797552 + 58797532 58797572 41 TGGGTGGCTGAGAGAGGAACCACCCAGGGCTGCCATCCAGG TGGGTGGCTTAGAGAGGAACCACCCAGGGCTGCCATCCAGG < 41bp 1 0.394676918471062 1 0.131765216588974 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF8 ENSG00000083842;ENSG00000273439 CDS Human other chr19:58797552 chr19:58797541 stopgain 0.282 0 10 hm5C_associated_SNPs_18452 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_19783 DeepMRMD:1;iRNA_m5C:0.999536712157815 19784 chr10 105048215 105048215 1 + G A CESC 105048230 + 105048210 105048250 41 ACCTAGAATCCTCAGTGCTACAACCTCCAAAGTCTCATCCA ACCTAAAATCCTCAGTGCTACAACCTCCAAAGTCTCATCCA < 41bp 1 0.301535543012838 1 0.168092280626297 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INA ENSG00000148798 CDS Human protein_coding chr10:105048230 chr10:105048215 nonsynonymous SNV 0.946 2 6 hm5C_associated_SNPs_18453 0 0 0 0 1 exosome 1 0.500231643904638 1 0.999536712190723 hm5C_site_19784 DeepMRMD:1;iRNA_m5C:0.999536712190723 19785 chr10 7842008 7842008 1 + G A CESC 7841992 + 7841972 7842012 41 TGTTTTTGTCAATTCTAGGTCTGTCATCTCCTATAAGACAG TGTTTTTGTCAATTCTAGGTCTGTCATCTCCTATAAAACAG < 41bp 1 0.1602396863809 1 0.0632224678993225 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841992 chr10:7842008 synonymous SNV . 0 37 hm5C_associated_SNPs_18454 0 0 1 0 2 Ribosome 1 0.500231647128473 1 0.999536705743053 hm5C_site_19785 DeepMRMD:1;iRNA_m5C:0.999536705743053 19786 chr10 7842008 7842008 1 + G A CESC 7841996 + 7841976 7842016 41 TTTGTCAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGA TTTGTCAATTCTAGGTCTGTCATCTCCTATAAAACAGAAGA < 41bp 1 0.120393896538241 1 0.139369934797287 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841996 chr10:7842008 synonymous SNV . 0 33 hm5C_associated_SNPs_18455 0 0 1 0 2 Ribosome 1 0.500231644041474 1 0.999536711917051 hm5C_site_19786 DeepMRMD:1;iRNA_m5C:0.999536711917051 19787 chr10 7842008 7842008 1 + G A CESC 7841999 + 7841979 7842019 41 GTCAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAA GTCAATTCTAGGTCTGTCATCTCCTATAAAACAGAAGAAAA < 41bp 1 0.478634712840553 1 0.530000448226929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841999 chr10:7842008 synonymous SNV . 0 30 hm5C_associated_SNPs_18456 0 0 1 0 2 Ribosome 1 0.500231643920829 0.939999103546142 0.999536712158341 hm5C_site_19787 DeepMRMD:0.939999103546142;iRNA_m5C:0.999536712158341 19788 chr10 7842008 7842008 1 + G A CESC 7842001 + 7841981 7842021 41 CAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAAGC CAATTCTAGGTCTGTCATCTCCTATAAAACAGAAGAAAAGC < 41bp 1 0.0594302817167897 1 0.53423011302948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7842001 chr10:7842008 synonymous SNV . 0 28 hm5C_associated_SNPs_18457 0 0 1 0 2 Ribosome 1 0.500231643916298 0.93153977394104 0.999536712167403 hm5C_site_19788 DeepMRMD:0.93153977394104;iRNA_m5C:0.999536712167403 19789 chr10 7842008 7842008 1 + G A CESC 7842002 + 7841982 7842022 41 AATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAAGCC AATTCTAGGTCTGTCATCTCCTATAAAACAGAAGAAAAGCC < 41bp 1 0.45343447358909 1 0.597342729568481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7842002 chr10:7842008 synonymous SNV . 0 27 hm5C_associated_SNPs_18458 0 0 1 0 2 Ribosome 1 0.500231643960382 0.805314540863038 0.999536712079236 hm5C_site_19789 DeepMRMD:0.805314540863038;iRNA_m5C:0.999536712079236 19790 chr7 4260916 4260916 1 + C G CESC 4260905 + 4260885 4260925 41 CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAC CCTAGAGATGTCCTGGTCACCAAGTCCGCCTGTGAACTGAC < 41bp 1 0.233467829087328 1 0.4902483522892 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4260905 chr7:4260916 nonsynonymous SNV 0.766 4 32 hm5C_associated_SNPs_18460 0 0 0 0 2 cytosol 1 0.500231643920905 1 0.999536712158191 hm5C_site_19790 DeepMRMD:1;iRNA_m5C:0.999536712158191 19791 chr19 24010138 24010138 1 + C T CESC 24010154 + 24010134 24010174 41 GCTTCTGCTGGCAGCTCGTGCTATTGTTGCCATTGAAAACC GCTTTTGCTGGCAGCTCGTGCTATTGTTGCCATTGAAAACC < 41bp 1 0.217900463197625 1 0.09791100025177 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010154 chr19:24010138 synonymous SNV . 0 5 hm5C_associated_SNPs_18461 0 0 1 0 0 Cytosol 1 0.500231644065407 1 0.999536711869186 hm5C_site_19791 DeepMRMD:1;iRNA_m5C:0.999536711869186 19792 chr16 1703045 1703045 1 + G A CESC 1703054 + 1703034 1703074 41 GCTTGAGTGATGAAGAGGACCAGAAGCCAGTGCGCCTGCCT GCTTGAGTGATAAAGAGGACCAGAAGCCAGTGCGCCTGCCT < 41bp 1 0.536104859915574 1 0.778140962123871 experiment 0.927790280168851 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1703054 chr16:1703045 nonsynonymous SNV 0.965 1 12 hm5C_associated_SNPs_18462 0 0 1 0 1 chromatin 1 0.500231643927948 0.443718075752258 0.999536712144105 hm5C_site_19792 DeepMRMD:0.443718075752258;iRNA_m5C:0.999536712144105 19793 chr1 201966484 201966484 1 + G C CESC 201966479 + 201966459 201966499 41 CTTCATGCCACCGTCCTTTCCATTTGGAGGAATGGAGAACC CTTCATGCCACCGTCCTTTCCATTTCGAGGAATGGAGAACC < 41bp 1 0.105730764828534 1 0.278356432914734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966479 chr1:201966484 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_18463 0 0 1 0 1 Ribosome 1 0.500231643921104 1 0.999536712157793 hm5C_site_19793 DeepMRMD:1;iRNA_m5C:0.999536712157793 19794 chr12 109539758 109539758 1 + C T CESC 109539764 + 109539744 109539784 41 GACCTAATCAAGCTCACGGGCTCTGCTTTAGTGTTCAAAGG GACCTAATCAAGCTTACGGGCTCTGCTTTAGTGTTCAAAGG < 41bp 1 0.291546417056016 1 0.194214254617691 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109539764 chr12:109539758 nonsynonymous SNV 0.932 4 15 hm5C_associated_SNPs_18464 0 0 1 0 2 Ribosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_19794 DeepMRMD:1;iRNA_m5C:0.999536712157811 19795 chr3 57898215 57898215 1 + C G CESC 57898199 + 57898179 57898219 41 AGAGATGAATTGCTTAGTGCCCGAGATGAAATTTTGCTCCT AGAGATGAATTGCTTAGTGCCCGAGATGAAATTTTGGTCCT < 41bp 1 0.537563655923096 1 0.668926775455475 experiment 0.924872688153808 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLMAP ENSG00000163681 CDS Human protein_coding chr3:57898199 chr3:57898215 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_18465 0 0 1 0 0 Ribosome 1 0.500231643474619 0.66214644908905 0.999536713050763 hm5C_site_19795 DeepMRMD:0.66214644908905;iRNA_m5C:0.999536713050763 19796 chr17 43214086 43214086 1 + G A CESC 43214071 + 43214051 43214091 41 GCCCCCAGGGACGCCTGGAACAGTCTGGGCAAGATGAGCAG GCCCCCAGGGACGCCTGGAACAGTCTGGGCAAGATAAGCAG < 41bp 1 0.594486851575515 1 0.326056063175201 experiment 0.811026296848969 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43214071 chr17:43214086 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_18466 0 0 1 0 2 Cytosol 1 0.500231641313072 1 0.999536717373856 hm5C_site_19796 DeepMRMD:1;iRNA_m5C:0.999536717373856 19797 chr11 399985 399985 1 + C T CESC 399996 + 399976 400016 41 GGAACCTTTCATCCAGCGACCACCTGAAGGACCGCCTGGCC GGAACCTTTTATCCAGCGACCACCTGAAGGACCGCCTGGCC < 41bp 1 0.319764291317348 1 0.279019862413406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:399996 chr11:399985 nonsynonymous SNV 0.774 3 10 hm5C_associated_SNPs_18467 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19797 DeepMRMD:1;iRNA_m5C:0.999536712157815 19798 chr7 55240757 55240757 1 + C T CESC 55240738 + 55240718 55240758 41 CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGGCCTCTTCA CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGGCCTCTTTA < 41bp 1 0.260837506322578 1 0.415222316980362 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55240738 chr7:55240757 synonymous SNV . 0 40 hm5C_associated_SNPs_18468 0 0 1 0 2 Nucleus 1 0.500231643919526 1 0.999536712160948 hm5C_site_19798 DeepMRMD:1;iRNA_m5C:0.999536712160948 19799 chr13 41650193 41650193 1 + G T CESC 41650198 + 41650178 41650218 41 AGAATCCAGATGGGAGAAACCTGATGATTTCATTCCACACA AGAATCCAGATGGGATAAACCTGATGATTTCATTCCACACA < 41bp 1 0.653453988113725 1 0.0495828688144684 experiment 0.69309202377255 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WBP4 ENSG00000120688 CDS Human protein_coding chr13:41650198 chr13:41650193 nonsynonymous SNV 0.996 5 16 hm5C_associated_SNPs_18469 0 0 0 0 1 Cytosol 1 0.500231151080907 1 0.999537697838186 hm5C_site_19799 DeepMRMD:1;iRNA_m5C:0.999537697838186 19800 chr15 40898639 40898639 1 + G A CESC 40898648 + 40898628 40898668 41 GAGGTGGGAATGAAAGAGTTCAGGTAAGTCTTTTGTGCAAA GAGGTGGGAATAAAAGAGTTCAGGTAAGTCTTTTGTGCAAA < 41bp 1 0.508498051757038 1 0.346201479434967 experiment 0.983003896485924 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNL1 ENSG00000137812 CDS Human protein_coding chr15:40898648 chr15:40898639 nonsynonymous SNV 0.976 2 12 hm5C_associated_SNPs_18470 0 0 1 0 2 unknown 1 0.500231643921411 1 0.999536712157178 hm5C_site_19800 DeepMRMD:1;iRNA_m5C:0.999536712157178 19801 chr1 231114978 231114978 1 + G C CESC 231114974 + 231114954 231114994 41 ATCGAATGCAACCAGGAGGCCAAAGAGTTGTACCGAGACTA ATCGAATGCAACCAGGAGGCCAAACAGTTGTACCGAGACTA < 41bp 1 0.347355912626582 1 0.130229413509369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARV1 ENSG00000173409 CDS Human protein_coding chr1:231114974 chr1:231114978 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_18471 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164915207 1 0.999536701695861 hm5C_site_19801 DeepMRMD:1;iRNA_m5C:0.999536701695861 19802 chr1 32620245 32620245 1 + G T CESC 32620232 + 32620212 32620252 41 GACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA GACAATTATCGAATGAAGAGCTATAAGAACAATTCTCTAAA < 41bp 1 0.233516119722055 1 0.283635199069977 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620232 chr1:32620245 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_18472 0 0 1 0 2 Cytosol 1 0.50023158082448 1 0.999536838351039 hm5C_site_19802 DeepMRMD:1;iRNA_m5C:0.999536838351039 19803 chr1 32620245 32620245 1 + G T CESC 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATTCTCTAAACCCTGAAGAAATGA < 41bp 1 0.450655094792346 1 0.280176311731339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620245 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_18473 0 0 1 0 2 Cytosol 1 0.500231641232717 1 0.999536717534566 hm5C_site_19803 DeepMRMD:1;iRNA_m5C:0.999536717534566 19804 chr1 32620245 32620245 1 + G T CESC 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATTCTCTAAACCCTGAAGAAATGAGA < 41bp 1 0.373939714059137 1 0.260517299175262 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620245 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_18474 0 0 1 0 2 Cytosol 1 0.500231643900626 1 0.999536712198749 hm5C_site_19804 DeepMRMD:1;iRNA_m5C:0.999536712198749 19805 chr1 32620245 32620245 1 + G T CESC 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATTCTCTAAACCCTGAAGAAATGAGACGAAG < 41bp 1 0.182255059168143 1 0.100959688425064 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620245 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_18475 0 0 1 0 2 Cytosol 1 0.500231643909704 1 0.999536712180591 hm5C_site_19805 DeepMRMD:1;iRNA_m5C:0.999536712180591 19806 chr1 32620245 32620245 1 + G T CESC 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATTCTCTAAACCCTGAAGAAATGAGACGAAGA < 41bp 1 0.212749328280878 1 0.228674471378326 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620245 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_18476 0 0 1 0 2 Cytosol 1 0.50023229353827 1 0.999535412923459 hm5C_site_19806 DeepMRMD:1;iRNA_m5C:0.999535412923459 19807 chr5 131977957 131977957 1 + T G CESC 131977975 + 131977955 131977995 41 TCTGAATATGTGGAGAAATTCTACAGGATTAAAAAGAACAT TCGGAATATGTGGAGAAATTCTACAGGATTAAAAAGAACAT < 41bp 1 0.692133810003956 1 0.733688950538635 experiment 0.615732379992088 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131977975 chr5:131977957 synonymous SNV . 0 3 hm5C_associated_SNPs_18477 0 0 1 0 1 Cytosol 1 0.500231643921092 0.53262209892273 0.999536712157815 hm5C_site_19807 DeepMRMD:0.53262209892273;iRNA_m5C:0.999536712157815 19808 chr14 102466695 102466695 1 + C T CESC 102466707 + 102466687 102466727 41 AAATCGATCAGATGAAGGAGCAACCCTGGGTTTCAGTACAG AAATCGATTAGATGAAGGAGCAACCCTGGGTTTCAGTACAG < 41bp 1 0.0429918650150708 1 0.209843844175339 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466707 chr14:102466695 stopgain 0.999 1 9 hm5C_associated_SNPs_18478 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19808 DeepMRMD:1;iRNA_m5C:0.999536712157815 19809 chr16 1793357 1793357 1 + G A CESC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTAAACGTGTTCCCCCTGGCTGACGGCACGGTACG < 41bp 1 0.127841647108522 1 0.231406599283218 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793357 synonymous SNV . 0 9 hm5C_associated_SNPs_18479 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157817 hm5C_site_19809 DeepMRMD:1;iRNA_m5C:0.999536712157817 19810 chr7 127228576 127228576 1 + C G CESC 127228572 + 127228552 127228592 41 CATGGGCCTCACCGTGTCCGCGCTCTTTTCGCGGATCTTCG CATGGGCCTCACCGTGTCCGCGCTGTTTTCGCGGATCTTCG < 41bp 1 0.556335431404536 1 0.0658783614635468 experiment 0.887329137190927 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARF5 ENSG00000004059 CDS Human protein_coding chr7:127228572 chr7:127228576 synonymous SNV . 0 25 hm5C_associated_SNPs_18480 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643253315 1 0.999536713493369 hm5C_site_19810 DeepMRMD:1;iRNA_m5C:0.999536713493369 19811 chr7 127228576 127228576 1 + C G CESC 127228574 + 127228554 127228594 41 TGGGCCTCACCGTGTCCGCGCTCTTTTCGCGGATCTTCGGG TGGGCCTCACCGTGTCCGCGCTGTTTTCGCGGATCTTCGGG < 41bp 1 0.429596600984122 1 0.0720932185649872 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARF5 ENSG00000004059 CDS Human protein_coding chr7:127228574 chr7:127228576 synonymous SNV . 0 23 hm5C_associated_SNPs_18481 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643919767 1 0.999536712160467 hm5C_site_19811 DeepMRMD:1;iRNA_m5C:0.999536712160467 19812 chr6 52288785 52288785 1 + C A CESC 52288769 + 52288749 52288789 41 AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCT AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAAAGGCT < 41bp 1 0.239432906630563 1 0.430997788906097 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288769 chr6:52288785 nonsynonymous SNV 0.988 2 37 hm5C_associated_SNPs_18482 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_19812 DeepMRMD:1;iRNA_m5C:0.999536712157816 19813 chr19 36223347 36223347 1 + C T CESC 36223344 + 36223324 36223364 41 GGCTCCCCCTGGCCCGGCCCCATCTCCACCACCCCCTGAAG GGCTCCCCCTGGCCCGGCCCCATTTCCACCACCCCCTGAAG < 41bp 1 0.0187555299518411 1 0.0727880895137787 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36223344 chr19:36223347 nonsynonymous SNV 0.484 4 24 hm5C_associated_SNPs_18483 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19813 DeepMRMD:1;iRNA_m5C:0.999536712157815 19814 chr16 86602295 86602295 1 + G A CESC 86602310 + 86602290 86602330 41 TGCGGGAGATGTTCAACTCCCACCGGCTGGGGATTGAGAAC TGCGGAAGATGTTCAACTCCCACCGGCTGGGGATTGAGAAC < 41bp 1 0.540646940512994 1 0.388899922370911 experiment 0.918706118974011 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FOXC2 ENSG00000176692 CDS Human protein_coding chr16:86602310 chr16:86602295 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_18484 0 0 0 0 0 exosome 1 0.500346434910034 1 0.999307130179932 hm5C_site_19814 DeepMRMD:1;iRNA_m5C:0.999307130179932 19815 chr22 38201771 38201771 1 + C T CESC 38201755 + 38201735 38201775 41 GAGAACGCTGACTCGCAGATCAAGTTGTCCATCAAGCGCCT GAGAACGCTGACTCGCAGATCAAGTTGTCCATCAAGTGCCT < 41bp 1 0.480178628491222 1 0.189383178949356 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control H1F0 ENSG00000189060 CDS Human protein_coding chr22:38201755 chr22:38201771 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_18485 0 0 1 0 0 Ribosome 1 0.499248150751292 1 1 hm5C_site_19815 DeepMRMD:1;iRNA_m5C:1 19816 chr4 79440596 79440596 1 + G C CESC 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCTCCTTGGAGCACCACACCGAGATGCAGTTTTCTTTCT < 41bp 1 0.168293000408418 1 0.563862919807434 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440596 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_18486 0 0 1 0 1 Nucleus 1 0.500231646690078 0.872274160385132 0.999536706619845 hm5C_site_19816 DeepMRMD:0.872274160385132;iRNA_m5C:0.999536706619845 19817 chr4 79440596 79440596 1 + G C CESC 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCTCCTTGGAGCACCACACCGAGATGCAGTTTTCTTTCTT < 41bp 1 0.438733827817335 1 0.671028017997742 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440596 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_18487 0 0 1 0 1 Nucleus 1 0.500231641941195 0.657943964004516 0.99953671611761 hm5C_site_19817 DeepMRMD:0.657943964004516;iRNA_m5C:0.99953671611761 19818 chr1 36754830 36754830 1 + C T CESC 36754839 + 36754819 36754859 41 AGAAGCCTTTTCGGGGCAGTCAGTCTCCCAAAAGGTATAAG AGAAGCCTTTTTGGGGCAGTCAGTCTCCCAAAAGGTATAAG < 41bp 1 0.190930355934259 1 0.306629478931427 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36754839 chr1:36754830 nonsynonymous SNV 0.997 4 12 hm5C_associated_SNPs_18488 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19818 DeepMRMD:1;iRNA_m5C:0.999536712157815 19819 chr11 46895142 46895142 1 + C T CESC 46895143 - 46895123 46895163 41 ACACTGGGCTCTCCCCAAGGCGAGCAGACCTGAACGGCAGC ACACTGGGCTCTCCCCAAGGCAAGCAGACCTGAACGGCAGC < 41bp 1 0.167447506917791 1 0.347202301025391 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP4 ENSG00000134569 CDS Human protein_coding chr11:46895143 chr11:46895142 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_18489 0 0 1 0 1 cytosol 1 0.500231643908772 1 0.999536712182457 hm5C_site_19819 DeepMRMD:1;iRNA_m5C:0.999536712182457 19820 chr19 38572458 38572458 1 + G A CESC 38572456 + 38572436 38572476 41 GGGCGTGCGCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGG GGGCGTGCGCGCAAGGGTGGCCAACTGGCCGCCCAAGCGGG < 41bp 1 0.033269837745625 1 0.166410058736801 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572456 chr19:38572458 nonsynonymous SNV 0.961 4 23 hm5C_associated_SNPs_18490 0 0 1 0 0 Ribosome 1 0.500231642269535 1 0.99953671546093 hm5C_site_19820 DeepMRMD:1;iRNA_m5C:0.99953671546093 19821 chr19 38572458 38572458 1 + G A CESC 38572457 + 38572437 38572477 41 GGCGTGCGCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGA GGCGTGCGCGCAAGGGTGGCCAACTGGCCGCCCAAGCGGGA < 41bp 1 0.164037033027761 1 0.431804627180099 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572457 chr19:38572458 nonsynonymous SNV 0.961 4 22 hm5C_associated_SNPs_18491 0 0 1 0 0 Ribosome 1 0.50023164392148 1 0.99953671215704 hm5C_site_19821 DeepMRMD:1;iRNA_m5C:0.99953671215704 19822 chr19 38572458 38572458 1 + G A CESC 38572464 + 38572444 38572484 41 GCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTG GCGCAAGGGTGGCCAACTGGCCGCCCAAGCGGGAGGCCCTG < 41bp 1 0.141607905695636 1 0.137637227773666 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572464 chr19:38572458 nonsynonymous SNV 0.961 4 15 hm5C_associated_SNPs_18492 0 0 1 0 0 Ribosome 1 0.500231644771587 1 0.999536710456825 hm5C_site_19822 DeepMRMD:1;iRNA_m5C:0.999536710456825 19823 chr19 38572458 38572458 1 + G A CESC 38572465 + 38572445 38572485 41 CGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGA CGCAAGGGTGGCCAACTGGCCGCCCAAGCGGGAGGCCCTGA < 41bp 1 0.175940363033235 1 0.180600017309189 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572465 chr19:38572458 nonsynonymous SNV 0.961 4 14 hm5C_associated_SNPs_18493 0 0 1 0 0 Ribosome 1 0.500231643965776 1 0.999536712068448 hm5C_site_19823 DeepMRMD:1;iRNA_m5C:0.999536712068448 19824 chr19 38572458 38572458 1 + G A CESC 38572467 + 38572447 38572487 41 CAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGA CAAGGGTGGCCAACTGGCCGCCCAAGCGGGAGGCCCTGAGA < 41bp 1 0.159302186882258 1 0.356692612171173 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572467 chr19:38572458 nonsynonymous SNV 0.961 4 12 hm5C_associated_SNPs_18494 0 0 1 0 0 Ribosome 1 0.500231643916844 1 0.999536712166312 hm5C_site_19824 DeepMRMD:1;iRNA_m5C:0.999536712166312 19825 chr19 38572458 38572458 1 + G A CESC 38572468 + 38572448 38572488 41 AAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAG AAGGGTGGCCAACTGGCCGCCCAAGCGGGAGGCCCTGAGAG < 41bp 1 0.065726687110648 1 0.619363784790039 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572468 chr19:38572458 nonsynonymous SNV 0.961 4 11 hm5C_associated_SNPs_18495 0 0 1 0 0 Ribosome 1 0.500231643921092 0.761272430419922 0.999536712157815 hm5C_site_19825 DeepMRMD:0.761272430419922;iRNA_m5C:0.999536712157815 19826 chr19 38572458 38572458 1 + G A CESC 38572469 + 38572449 38572489 41 AGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAGA AGGGTGGCCAACTGGCCGCCCAAGCGGGAGGCCCTGAGAGA < 41bp 1 0.176429699635916 1 0.50865250825882 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572469 chr19:38572458 nonsynonymous SNV 0.961 4 10 hm5C_associated_SNPs_18496 0 0 1 0 0 Ribosome 1 0.500231643920956 0.98269498348236 0.999536712158088 hm5C_site_19826 DeepMRMD:0.98269498348236;iRNA_m5C:0.999536712158088 19827 chr19 3434290 3434290 1 + G A CESC 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGAAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG < 41bp 1 0.381550454210911 1 0.880393624305725 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434290 nonsynonymous SNV 0.995 4 5 hm5C_associated_SNPs_18497 0 0 1 0 1 Ribosome 1 0.500231643921092 0.23921275138855 0.999536712157815 hm5C_site_19827 DeepMRMD:0.23921275138855;iRNA_m5C:0.999536712157815 19828 chr17 79202798 79202798 1 + G A CESC 79202783 - 79202763 79202803 41 AACATCGTCCCAGAGGACAGCAGCCAAAGAGCCTCCTGGCT AACATTGTCCCAGAGGACAGCAGCCAAAGAGCCTCCTGGCT < 41bp 1 0.211999982563908 1 0.359017342329025 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79202783 chr17:79202798 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_18498 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19828 DeepMRMD:1;iRNA_m5C:0.999536712157815 19829 chr13 111155758 111155758 1 + G T CESC 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA TAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA < 41bp 1 0.20704806054347 1 0.68088960647583 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155758 synonymous SNV . 0 1 hm5C_associated_SNPs_18499 0 0 0 0 2 Cytosol 1 0.500231620087184 0.63822078704834 0.999536759825632 hm5C_site_19829 DeepMRMD:0.63822078704834;iRNA_m5C:0.999536759825632 19830 chr16 15788044 15788044 1 + G A CESC 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGAACCCCCCTCACACCTGCGGCCCG < 41bp 1 0.25535243024024 1 0.197886824607849 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788044 synonymous SNV . 0 18 hm5C_associated_SNPs_18500 1 0 1 0 2 chromatin 1 0.50023164373171 1 0.999536712536579 hm5C_site_19830 DeepMRMD:1;iRNA_m5C:0.999536712536579 not specified not specified 19831 chr20 61574475 61574475 1 + G C CESC 61574466 + 61574446 61574486 41 AAAGGTCAGATTCAGGAGGCCATCGCCTTGATCAACAGCCT AAAGGTCAGATTCAGGAGGCCATCGCCTTCATCAACAGCCT < 41bp 1 0.201437654215425 1 0.0525189638137817 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GID8 ENSG00000101193 CDS Human protein_coding chr20:61574466 chr20:61574475 nonsynonymous SNV 0.569 4 30 hm5C_associated_SNPs_18501 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19831 DeepMRMD:1;iRNA_m5C:0.999536712157815 19832 chr11 111948979 111948979 1 + A C CESC 111948975 + 111948955 111948995 41 ATATGTGGAAAATAAGAGAACTGGAAAAACAGATGGAAGAT ATATGTGGAAAATAAGAGAACTGGCAAAACAGATGGAAGAT < 41bp 1 0.446301977135986 1 0.264638245105743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C11orf57 ENSG00000150776 CDS Human protein_coding chr11:111948975 chr11:111948979 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_18502 0 0 1 0 2 Cytosol 1 0.500231642827098 1 0.999536714345805 hm5C_site_19832 DeepMRMD:1;iRNA_m5C:0.999536714345805 19833 chr15 52188684 52188684 1 + C T CESC 52188695 + 52188675 52188715 41 GAAATGTTTCAGTCTTGCAGCCACCCGGAGCAATGACCCTG GAAATGTTTTAGTCTTGCAGCCACCCGGAGCAATGACCCTG < 41bp 1 0.0901589625523675 1 0.0531454980373383 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMOD3 ENSG00000138594 CDS Human protein_coding chr15:52188695 chr15:52188684 synonymous SNV . 0 10 hm5C_associated_SNPs_18503 0 0 1 1 2 Cytosol 1 0.500231643891155 1 0.999536712217691 hm5C_site_19833 DeepMRMD:1;iRNA_m5C:0.999536712217691 19834 chr10 46918241 46918241 1 + G C CESC 46918258 + 46918238 46918278 41 TCAGAGATCTTCCTCCGAGACAGCCTCAGAGGGTGAACAGT TCACAGATCTTCCTCCGAGACAGCCTCAGAGGGTGAACAGT < 41bp 1 0.387296713627875 1 0.0846152305603027 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM35BP ENSG00000165874 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:46918258 chr10:46918241 . . 0 4 hm5C_associated_SNPs_18504 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_19834 DeepMRMD:1;iRNA_m5C:0.999536712157815 19835 chr2 227729838 227729838 1 + C G CESC 227729840 + 227729820 227729860 41 GAGCTGTGCTGTAGGTTTCTCAGGTAAGGGAGACAAAATTT GAGCTGTGCTGTAGGTTTGTCAGGTAAGGGAGACAAAATTT < 41bp 1 0.670820479051039 1 0.487635403871536 experiment 0.658359041897921 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RHBDD1 ENSG00000144468 CDS Human protein_coding chr2:227729840 chr2:227729838 nonsynonymous SNV 0.994 4 19 hm5C_associated_SNPs_18505 0 0 1 0 1 Endoplasmic reticulum 1 0.500231075386609 1 0.999537849226782 hm5C_site_19835 DeepMRMD:1;iRNA_m5C:0.999537849226782 19836 chr1 182827319 182827319 1 + C T CESC 182827338 + 182827318 182827358 41 CCATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA CTATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA < 41bp 1 0.190158391359216 1 0.176957339048386 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827338 chr1:182827319 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_18506 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19836 DeepMRMD:1;iRNA_m5C:0.999536712157815 19837 chr5 177565208 177565208 1 + G C CESC 177565214 + 177565194 177565234 41 GTGAGCGGAGCCTGGAGGAGCTGCTGCACTACGTGGGCCAG GTGAGCGGAGCCTGCAGGAGCTGCTGCACTACGTGGGCCAG < 41bp 1 0.69271741081808 1 0.211882799863815 experiment 0.61456517836384 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RMND5B ENSG00000145916 CDS Human protein_coding chr5:177565214 chr5:177565208 nonsynonymous SNV 0.997 1 15 hm5C_associated_SNPs_18507 0 0 1 0 1 Cytosol 1 0.500231643921033 1 0.999536712157934 hm5C_site_19837 DeepMRMD:1;iRNA_m5C:0.999536712157934 19838 chr8 22037970 22037970 1 + C T CESC 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGTGC < 41bp 1 0.357374364209623 1 0.0936912596225739 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037970 nonsynonymous SNV 0.993 3 39 hm5C_associated_SNPs_18508 0 0 1 1 2 Endoplasmic reticulum 1 0.500231539616448 1 0.999536920767105 hm5C_site_19838 DeepMRMD:1;iRNA_m5C:0.999536920767105 19839 chr1 3342249 3342249 1 + G A CESC 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTGCAACCACTGCTTCGGGCAGCAGACCAA < 41bp 1 0.356057787814836 1 0.326640665531158 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342249 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_18509 0 0 0 0 1 Nucleus 1 0.500231683850128 1 0.999536632299743 hm5C_site_19839 DeepMRMD:1;iRNA_m5C:0.999536632299743 19840 chr19 50733876 50733876 1 + C G CESC 50733861 + 50733841 50733881 41 TTCTACCAGCTGCTGGGGGGCGCTGGAGAGCAGCTCAAAGG TTCTACCAGCTGCTGGGGGGCGCTGGAGAGCAGCTGAAAGG < 41bp 1 0.268221298450225 1 0.475104451179504 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50733861 chr19:50733876 synonymous SNV . 0 36 hm5C_associated_SNPs_18510 0 0 1 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19840 DeepMRMD:1;iRNA_m5C:0.999536712157815 19841 chr7 75933350 75933350 1 + G A CESC 75933337 + 75933317 75933357 41 GACCCCACCCAAGTTTCCTCCTCCCTGTCCCCTGAGGGCAC GACCCCACCCAAGTTTCCTCCTCCCTGTCCCCTAAGGGCAC < 41bp 1 0.434346053238089 1 0.714993238449097 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933337 chr7:75933350 nonsynonymous SNV 0.998 3 34 hm5C_associated_SNPs_18511 0 0 1 0 1 Cytosol 1 0.500231643913815 0.570013523101806 0.99953671217237 hm5C_site_19841 DeepMRMD:0.570013523101806;iRNA_m5C:0.99953671217237 19842 chr10 102684014 102684014 1 + C G CESC 102684010 + 102683990 102684030 41 ATTCTGGCAATTCTGGCCACCATTCTACCAGGAATAGTGAC ATTCTGGCAATTCTGGCCACCATTGTACCAGGAATAGTGAC < 41bp 1 0.0943950165495862 1 0.123559772968292 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102684010 chr10:102684014 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_18512 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19842 DeepMRMD:1;iRNA_m5C:0.999536712157815 19843 chr10 102684014 102684014 1 + C G CESC 102684031 + 102684011 102684051 41 ATTCTACCAGGAATAGTGACCAAATCCAAGTGGCAGGTACC ATTGTACCAGGAATAGTGACCAAATCCAAGTGGCAGGTACC < 41bp 1 0.108879669766345 1 0.419168919324875 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102684031 chr10:102684014 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_18513 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19843 DeepMRMD:1;iRNA_m5C:0.999536712157815 19844 chr1 6680012 6680012 1 + C G CESC 6679994 + 6679974 6680014 41 GTCTCTGACCGCTGCTTTAGCCACCTGCAGCCTACTCTCTT GTCTCTGACCGCTGCTTTAGCCACCTGCAGCCTACTCTGTT < 41bp 1 0.167574969922677 1 0.120843559503555 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6679994 chr1:6680012 synonymous SNV . 0 39 hm5C_associated_SNPs_18514 0 0 1 0 0 cytosol 1 0.50023164210923 1 0.99953671578154 hm5C_site_19844 DeepMRMD:1;iRNA_m5C:0.99953671578154 19845 chr1 6680012 6680012 1 + C G CESC 6679997 + 6679977 6680017 41 TCTGACCGCTGCTTTAGCCACCTGCAGCCTACTCTCTTGCA TCTGACCGCTGCTTTAGCCACCTGCAGCCTACTCTGTTGCA < 41bp 1 0.081866430248238 1 0.0918152928352356 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6679997 chr1:6680012 synonymous SNV . 0 36 hm5C_associated_SNPs_18515 0 0 1 0 0 cytosol 1 0.500231981334444 1 0.999536037331112 hm5C_site_19845 DeepMRMD:1;iRNA_m5C:0.999536037331112 19846 chr5 102262314 102262314 1 + G A CESC 102262299 + 102262279 102262319 41 AAATCTTTAGGTGTTGGATTCAGAGTTGGAGGAGAGACTGG AAATCTTTAGGTGTTGGATTCAGAGTTGGAGGAGAAACTGG < 41bp 1 0.345233132854403 1 0.945936799049377 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102262299 chr5:102262314 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_18516 0 0 1 0 2 Ribosome 1 0.500231643909402 0.108126401901246 0.999536712181195 hm5C_site_19846 DeepMRMD:0.108126401901246;iRNA_m5C:0.999536712181195 19847 chr17 57287571 57287571 1 + C A CESC 57287568 + 57287548 57287588 41 GAGATCTGCGTTGTGGGAATCTTCGGCAAGACGGCTCTACG GAGATCTGCGTTGTGGGAATCTTAGGCAAGACGGCTCTACG < 41bp 1 0.430219773481112 1 0.504193902015686 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMG8 ENSG00000167447 CDS Human protein_coding chr17:57287568 chr17:57287571 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_18517 0 0 0 0 0 chromatin 1 0.500231643921168 0.991612195968628 0.999536712157663 hm5C_site_19847 DeepMRMD:0.991612195968628;iRNA_m5C:0.999536712157663 19848 chr14 61201641 61201641 1 + C T CESC 61201633 + 61201613 61201653 41 CACCAAATATCGGAACCCCTCCTTGAAGCTGATGGTGAATG CACCAAATATCGGAACCCCTCCTTGAAGTTGATGGTGAATG < 41bp 1 0.121693707495096 1 0.158790409564972 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61201633 chr14:61201641 synonymous SNV . 0 29 hm5C_associated_SNPs_18518 0 0 1 0 1 Ribosome 1 0.500231656932025 1 0.999536686135949 hm5C_site_19848 DeepMRMD:1;iRNA_m5C:0.999536686135949 19849 chr2 133402824 133402824 1 + G C CESC 133402834 + 133402814 133402854 41 TTCTACCTCAGCTCGGTCATCAACCCGCTCCTGTACACGGT TTCTACCTCACCTCGGTCATCAACCCGCTCCTGTACACGGT < 41bp 1 0.158286290462939 1 0.135297834873199 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR39 ENSG00000183840 CDS Human protein_coding chr2:133402834 chr2:133402824 nonsynonymous SNV 0.993 4 11 hm5C_associated_SNPs_18519 0 0 0 0 0 nucleus 1 0.500231643920897 1 0.999536712158206 hm5C_site_19849 DeepMRMD:1;iRNA_m5C:0.999536712158206 19850 chr15 83502192 83502192 1 + G C CESC 83502180 + 83502160 83502200 41 CCAACCAGCAACAGACGCACCAGTGACCTTGAGAGGAGCAT CCAACCAGCAACAGACGCACCAGTGACCTTGACAGGAGCAT < 41bp 1 0.250822946984932 1 0.322668552398682 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control WHAMM ENSG00000156232 CDS Human protein_coding chr15:83502180 chr15:83502192 nonsynonymous SNV 0.561 4 33 hm5C_associated_SNPs_18520 0 0 1 0 0 Nucleus 1 0.500231646614995 1 0.99953670677001 hm5C_site_19850 DeepMRMD:1;iRNA_m5C:0.99953670677001 19851 chr10 70506953 70506953 1 + G A CESC 70506935 + 70506915 70506955 41 CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAG CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAG < 41bp 1 0.133947024210604 1 0.219482392072678 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506935 chr10:70506953 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_18521 0 0 1 3 2 Nucleus 1 0.50023164392109 1 0.999536712157821 hm5C_site_19851 DeepMRMD:1;iRNA_m5C:0.999536712157821 19852 chr10 70506953 70506953 1 + G A CESC 70506936 + 70506916 70506956 41 AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGT AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGT < 41bp 1 0.168747511264222 1 0.127678543329239 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506936 chr10:70506953 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_18522 0 0 1 3 2 Nucleus 1 0.500231644881421 1 0.999536710237157 hm5C_site_19852 DeepMRMD:1;iRNA_m5C:0.999536710237157 19853 chr10 70506953 70506953 1 + G A CESC 70506937 + 70506917 70506957 41 GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTA GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGTA < 41bp 1 0.520189509124176 1 0.278316110372543 experiment 0.959620981751648 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506937 chr10:70506953 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_18523 0 0 1 3 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_19853 DeepMRMD:1;iRNA_m5C:0.999536712157815 19854 chr10 70506953 70506953 1 + G A CESC 70506938 + 70506918 70506958 41 TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTAT TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAAAGTAT < 41bp 1 0.373345607275869 1 0.307306945323944 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506938 chr10:70506953 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_18524 0 0 1 3 2 Nucleus 1 0.500231643952552 1 0.999536712094895 hm5C_site_19854 DeepMRMD:1;iRNA_m5C:0.999536712094895 19855 chr10 72434400 72434400 1 + G A CESC 72434407 + 72434387 72434427 41 TCTCCCACGTGGTGTCTGGCCCAGCAGCAGCCTCTGCAGGG TCTCCCACGTGGTATCTGGCCCAGCAGCAGCCTCTGCAGGG < 41bp 1 0.153063544710232 1 0.128694891929626 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72434407 chr10:72434400 synonymous SNV . 0 14 hm5C_associated_SNPs_18525 0 0 0 0 1 chromatin 1 0.500231655561572 1 0.999536688876857 hm5C_site_19855 DeepMRMD:1;iRNA_m5C:0.999536688876857 19856 chr10 72434400 72434400 1 + G A CESC 72434411 + 72434391 72434431 41 CCACGTGGTGTCTGGCCCAGCAGCAGCCTCTGCAGGGAGCA CCACGTGGTATCTGGCCCAGCAGCAGCCTCTGCAGGGAGCA < 41bp 1 0.696017286487826 1 0.59466826915741 experiment 0.607965427024349 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72434411 chr10:72434400 synonymous SNV . 0 10 hm5C_associated_SNPs_18526 0 0 0 0 1 chromatin 1 0.500231643950525 0.81066346168518 0.99953671209895 hm5C_site_19856 DeepMRMD:0.81066346168518;iRNA_m5C:0.99953671209895 19857 chr19 7584342 7584342 1 + G T CESC 7584339 + 7584319 7584359 41 TGGAGCCCGTCTCGGAGGATCTGGACCCCGACGCCGAAGCT TGGAGCCCGTCTCGGAGGATCTGTACCCCGACGCCGAAGCT < 41bp 1 0.485673999886616 1 0.541741013526917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF358 ENSG00000198816 CDS Human protein_coding chr19:7584339 chr19:7584342 nonsynonymous SNV 0.286 2 24 hm5C_associated_SNPs_18527 0 0 1 0 0 Cytosol 1 0.500231643841061 0.916517972946166 0.999536712317879 hm5C_site_19857 DeepMRMD:0.916517972946166;iRNA_m5C:0.999536712317879 19858 chr12 57919335 57919335 1 + C G CESC 57919351 + 57919331 57919371 41 CCTTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGG CCTTGTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGG < 41bp 1 0.27663285795085 1 0.357176423072815 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919351 chr12:57919335 nonsynonymous SNV 0.001 1 5 hm5C_associated_SNPs_18528 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19858 DeepMRMD:1;iRNA_m5C:0.999536712157815 19859 chr12 57919335 57919335 1 + C G CESC 57919352 + 57919332 57919372 41 CTTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGC CTTGTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGC < 41bp 1 0.417684408532515 1 0.276952147483826 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919352 chr12:57919335 nonsynonymous SNV 0.001 1 4 hm5C_associated_SNPs_18529 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19859 DeepMRMD:1;iRNA_m5C:0.999536712157815 19860 chr12 57919335 57919335 1 + C G CESC 57919353 + 57919333 57919373 41 TTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGCA TTGTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGCA < 41bp 1 0.321300102041874 1 0.145074337720871 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919353 chr12:57919335 nonsynonymous SNV 0.001 1 3 hm5C_associated_SNPs_18530 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19860 DeepMRMD:1;iRNA_m5C:0.999536712157815 19861 chr12 57919335 57919335 1 + C G CESC 57919354 + 57919334 57919374 41 TCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGCAA TGTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGCAA < 41bp 1 0.0948532154538448 1 0.0818881690502167 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919354 chr12:57919335 nonsynonymous SNV 0.001 1 2 hm5C_associated_SNPs_18531 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19861 DeepMRMD:1;iRNA_m5C:0.999536712157815 19862 chr12 57919335 57919335 1 + C G CESC 57919355 + 57919335 57919375 41 CTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGCAAT GTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGCAAT < 41bp 1 0.0639695167331903 1 0.237396955490112 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919355 chr12:57919335 nonsynonymous SNV 0.001 1 1 hm5C_associated_SNPs_18532 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19862 DeepMRMD:1;iRNA_m5C:0.999536712157815 19863 chr2 232577224 232577224 1 + G A CESC 232577210 + 232577190 232577230 41 GTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATGAGGTGG GTCAGCTACGGGCAAGCGGGCAGCTGAAGATGATAAGGTGG < 41bp 1 0.442358306951131 1 0.555986225605011 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232577210 chr2:232577224 nonsynonymous SNV 0.996 1 35 hm5C_associated_SNPs_18533 0 0 1 0 2 Ribosome 1 0.500231643921092 0.888027548789978 0.999536712157815 hm5C_site_19863 DeepMRMD:0.888027548789978;iRNA_m5C:0.999536712157815 19864 chr11 61404676 61404676 1 + G C CESC 61404674 + 61404654 61404694 41 GAGCCAGTGAAGCCACGCTGCTGACCATGCTCAACATCTCC GAGCCAGTGAAGCCACGCTGCTCACCATGCTCAACATCTCC < 41bp 1 0.156708679742454 1 0.0652658939361572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404674 chr11:61404676 . . 0 23 hm5C_associated_SNPs_18534 0 0 1 0 0 unknown 1 0.500231617824893 1 0.999536764350213 hm5C_site_19864 DeepMRMD:1;iRNA_m5C:0.999536764350213 19865 chrX 41201855 41201855 1 + C G CESC 41201835 + 41201815 41201855 41 AAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATC AAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATG < 41bp 1 0.273945024349857 1 0.165093153715134 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201835 chrX:41201855 stopgain 1.000 0 41 hm5C_associated_SNPs_18535 0 0 1 0 1 Nucleus 1 0.500231643930817 1 0.999536712138367 hm5C_site_19865 DeepMRMD:1;iRNA_m5C:0.999536712138367 19866 chrX 41201855 41201855 1 + C G CESC 41201839 + 41201819 41201859 41 TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGAT TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATGAGAT < 41bp 1 0.684480134757095 1 0.238089740276337 experiment 0.63103973048581 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201839 chrX:41201855 stopgain 1.000 0 37 hm5C_associated_SNPs_18536 0 0 1 0 1 Nucleus 1 0.500231679122678 1 0.999536641754645 hm5C_site_19866 DeepMRMD:1;iRNA_m5C:0.999536641754645 19867 chrX 41201855 41201855 1 + C G CESC 41201850 + 41201830 41201870 41 GGAAACAGTCGCTGGTGTGACAAATCAGATGAAGATGATTG GGAAACAGTCGCTGGTGTGACAAATGAGATGAAGATGATTG < 41bp 1 0.404511788182126 1 0.486346691846848 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201850 chrX:41201855 stopgain 1.000 0 26 hm5C_associated_SNPs_18537 0 0 1 0 1 Nucleus 1 0.500231643920839 1 0.999536712158322 hm5C_site_19867 DeepMRMD:1;iRNA_m5C:0.999536712158322 19868 chr5 9549019 9549019 1 + C T CESC 9549001 + 9548981 9549021 41 TGTGACTTGAAAAATGCCATCCATTTCCTGATTCACCTCAA TGTGACTTGAAAAATGCCATCCATTTCCTGATTCACCTTAA < 41bp 1 0.0663466595868151 1 0.034344494342804 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000250786 ncRNA_intronic Human lincRNA chr5:9549001 chr5:9549019 . . 0 39 hm5C_associated_SNPs_18538 0 0 0 2 0 unknown 1 0.500566182200461 1 0.998867635599079 hm5C_site_19868 DeepMRMD:1;iRNA_m5C:0.998867635599079 19869 chr5 9549019 9549019 1 + C T CESC 9549002 + 9548982 9549022 41 GTGACTTGAAAAATGCCATCCATTTCCTGATTCACCTCAAT GTGACTTGAAAAATGCCATCCATTTCCTGATTCACCTTAAT < 41bp 1 0.0228093072585839 1 0.065372109413147 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000250786 ncRNA_intronic Human lincRNA chr5:9549002 chr5:9549019 . . 0 38 hm5C_associated_SNPs_18539 0 0 0 2 0 unknown 1 0.500356911294329 1 0.999286177411342 hm5C_site_19869 DeepMRMD:1;iRNA_m5C:0.999286177411342 19870 chr5 9549019 9549019 1 + C T CESC 9549007 + 9548987 9549027 41 TTGAAAAATGCCATCCATTTCCTGATTCACCTCAATTCTGT TTGAAAAATGCCATCCATTTCCTGATTCACCTTAATTCTGT < 41bp 1 0.340367638911924 1 0.0644253194332123 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000250786 ncRNA_intronic Human lincRNA chr5:9549007 chr5:9549019 . . 0 33 hm5C_associated_SNPs_18540 0 0 0 2 0 unknown 1 0.500231643920887 1 0.999536712158227 hm5C_site_19870 DeepMRMD:1;iRNA_m5C:0.999536712158227 19871 chr19 1453477 1453477 1 + C G CESC 1453489 + 1453469 1453509 41 TCCAGCCGCCCACCCTGGGCCCGGAGCCTGCCGCCCGGACC TCCAGCCGGCCACCCTGGGCCCGGAGCCTGCCGCCCGGACC < 41bp 1 0.424040593175202 1 0.56485503911972 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453489 chr19:1453477 nonsynonymous SNV 0.009 3 9 hm5C_associated_SNPs_18541 0 0 0 0 1 nucleolus 1 0.500231644547452 0.87028992176056 0.999536710905096 hm5C_site_19871 DeepMRMD:0.87028992176056;iRNA_m5C:0.999536710905096 19872 chr17 41348575 41348575 1 + G C CESC 41348556 + 41348536 41348576 41 CCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGA CCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAGGAACA < 41bp 1 0.556906710071346 1 0.106635183095932 experiment 0.886186579857307 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348556 chr17:41348575 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_18542 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19872 DeepMRMD:1;iRNA_m5C:0.999536712157815 19873 chr17 41348575 41348575 1 + G C CESC 41348563 + 41348543 41348583 41 TAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGAGAATGAA TAGAGAAGCCAGGCTTGGGGCAGATAGAGGAACAGAATGAA < 41bp 1 0.320491018153826 1 0.380658805370331 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348563 chr17:41348575 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_18543 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_19873 DeepMRMD:1;iRNA_m5C:0.999536712157815 19874 chr9 129458226 129458226 1 + C T CESC 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGGCAGCAGCGACCTCTTCCAGCAGGG < 41bp 1 0.555231688283655 1 0.530311763286591 experiment 0.88953662343269 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458226 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_18544 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164391459 0.939376473426818 0.99953671217082 hm5C_site_19874 DeepMRMD:0.939376473426818;iRNA_m5C:0.99953671217082 19875 chr9 97767829 97767829 1 + G C CESC 97767847 + 97767827 97767867 41 ACGAAATGGATTGGAGTGAACCGGAGACCCCGAAAACGGAA ACCAAATGGATTGGAGTGAACCGGAGACCCCGAAAACGGAA < 41bp 1 0.672876189824563 1 0.591561257839203 experiment 0.654247620350873 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97767847 chr9:97767829 synonymous SNV . 0 3 hm5C_associated_SNPs_18545 0 0 1 0 2 Cytosol 1 0.500231650404758 0.816877484321594 0.999536699190484 hm5C_site_19875 DeepMRMD:0.816877484321594;iRNA_m5C:0.999536699190484 19876 chr22 37425517 37425517 1 + G A CESC 37425514 + 37425494 37425534 41 AGTGGTACATGCGCGCCCGGCCCGAGGATGTCATCTCAGAG AGTGGTACATGCGCGCCCGGCCCAAGGATGTCATCTCAGAG < 41bp 1 0.417125221307175 1 0.286644577980042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control MPST ENSG00000128309 CDS Human protein_coding chr22:37425514 chr22:37425517 nonsynonymous SNV 0.019 1 24 hm5C_associated_SNPs_18546 0 0 1 1 0 chromatin 1 0.500231643922762 1 0.999536712154476 hm5C_site_19876 DeepMRMD:1;iRNA_m5C:0.999536712154476 19877 chr22 37425517 37425517 1 + G A CESC 37425515 + 37425495 37425535 41 GTGGTACATGCGCGCCCGGCCCGAGGATGTCATCTCAGAGG GTGGTACATGCGCGCCCGGCCCAAGGATGTCATCTCAGAGG < 41bp 1 0.308527744746388 1 0.356207370758057 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MPST ENSG00000128309 CDS Human protein_coding chr22:37425515 chr22:37425517 nonsynonymous SNV 0.019 1 23 hm5C_associated_SNPs_18547 0 0 1 1 0 chromatin 1 0.500231642792858 1 0.999536714414283 hm5C_site_19877 DeepMRMD:1;iRNA_m5C:0.999536714414283 19878 chr22 37425517 37425517 1 + G A CESC 37425537 + 37425517 37425557 41 GAGGATGTCATCTCAGAGGGCCGGGGGAAGACCCACTGAAG AAGGATGTCATCTCAGAGGGCCGGGGGAAGACCCACTGAAG < 41bp 1 0.657584254257925 1 0.894755065441132 experiment 0.68483149148415 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MPST ENSG00000128309 CDS Human protein_coding chr22:37425537 chr22:37425517 nonsynonymous SNV 0.019 1 1 hm5C_associated_SNPs_18548 0 0 1 1 0 chromatin 1 0.500231643922481 0.210489869117736 0.999536712155038 hm5C_site_19878 DeepMRMD:0.210489869117736;iRNA_m5C:0.999536712155038 19879 chr12 57919806 57919806 1 + C T CESC 57919787 + 57919767 57919807 41 GCACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCA GCACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTTA < 41bp 1 0.402563915479358 1 0.440351068973541 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919787 chr12:57919806 nonsynonymous SNV 0.979 1 40 hm5C_associated_SNPs_18549 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19879 DeepMRMD:1;iRNA_m5C:0.999536712157815 19880 chr12 57919806 57919806 1 + C T CESC 57919788 + 57919768 57919808 41 CACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAG CACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTTAG < 41bp 1 0.224286615741284 1 0.426280051469803 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919788 chr12:57919806 nonsynonymous SNV 0.979 1 39 hm5C_associated_SNPs_18550 0 0 1 0 0 chromatin 1 0.500231643921096 1 0.999536712157808 hm5C_site_19880 DeepMRMD:1;iRNA_m5C:0.999536712157808 19881 chr12 57919806 57919806 1 + C T CESC 57919789 + 57919769 57919809 41 ACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGC ACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTTAGC < 41bp 1 0.166134697356778 1 0.224053949117661 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919789 chr12:57919806 nonsynonymous SNV 0.979 1 38 hm5C_associated_SNPs_18551 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19881 DeepMRMD:1;iRNA_m5C:0.999536712157815 19882 chr12 57919806 57919806 1 + C T CESC 57919790 + 57919770 57919810 41 CTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCT CTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTTAGCT < 41bp 1 0.218657047257292 1 0.422840595245361 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919790 chr12:57919806 nonsynonymous SNV 0.979 1 37 hm5C_associated_SNPs_18552 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_19882 DeepMRMD:1;iRNA_m5C:0.999536712157815 19883 chr12 57919806 57919806 1 + C T CESC 57919794 + 57919774 57919814 41 ACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCC ACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTTAGCTTCCC < 41bp 1 0.276421048848896 1 0.218919157981873 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919794 chr12:57919806 nonsynonymous SNV 0.979 1 33 hm5C_associated_SNPs_18553 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19883 DeepMRMD:1;iRNA_m5C:0.999536712157815 19884 chr12 57919806 57919806 1 + C T CESC 57919795 + 57919775 57919815 41 CAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCA CAGGGCCGAAGGCCCCGTGCCCAGGCACCCTTAGCTTCCCA < 41bp 1 0.28248689332298 1 0.190167963504791 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919795 chr12:57919806 nonsynonymous SNV 0.979 1 32 hm5C_associated_SNPs_18554 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19884 DeepMRMD:1;iRNA_m5C:0.999536712157815 19885 chr12 57919806 57919806 1 + C T CESC 57919796 + 57919776 57919816 41 AGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCAC AGGGCCGAAGGCCCCGTGCCCAGGCACCCTTAGCTTCCCAC < 41bp 1 0.501144656603022 1 0.851449310779572 experiment 0.997710686793955 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919796 chr12:57919806 nonsynonymous SNV 0.979 1 31 hm5C_associated_SNPs_18555 0 0 1 0 0 chromatin 1 0.500231643921092 0.297101378440856 0.999536712157815 hm5C_site_19885 DeepMRMD:0.297101378440856;iRNA_m5C:0.999536712157815 19886 chr12 57919806 57919806 1 + C T CESC 57919800 + 57919780 57919820 41 CCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCT CCGAAGGCCCCGTGCCCAGGCACCCTTAGCTTCCCACTCCT < 41bp 1 0.286912844148407 1 0.0173371732234955 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919800 chr12:57919806 nonsynonymous SNV 0.979 1 27 hm5C_associated_SNPs_18556 0 0 1 0 0 chromatin 1 0.500231643920776 1 0.999536712158448 hm5C_site_19886 DeepMRMD:1;iRNA_m5C:0.999536712158448 19887 chr12 57919806 57919806 1 + C T CESC 57919802 + 57919782 57919822 41 GAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCA GAAGGCCCCGTGCCCAGGCACCCTTAGCTTCCCACTCCTCA < 41bp 1 0.0324533318594258 1 0.0117581784725189 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919802 chr12:57919806 nonsynonymous SNV 0.979 1 25 hm5C_associated_SNPs_18557 0 0 1 0 0 chromatin 1 0.500231643918571 1 0.999536712162858 hm5C_site_19887 DeepMRMD:1;iRNA_m5C:0.999536712162858 19888 chr12 57919806 57919806 1 + C T CESC 57919803 + 57919783 57919823 41 AAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCAT AAGGCCCCGTGCCCAGGCACCCTTAGCTTCCCACTCCTCAT < 41bp 1 0.0599608302811077 1 0.0215170979499817 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919803 chr12:57919806 nonsynonymous SNV 0.979 1 24 hm5C_associated_SNPs_18558 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19888 DeepMRMD:1;iRNA_m5C:0.999536712157815 19889 chr12 57919806 57919806 1 + C T CESC 57919804 + 57919784 57919824 41 AGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATC AGGCCCCGTGCCCAGGCACCCTTAGCTTCCCACTCCTCATC < 41bp 1 0.23384632337967 1 0.0542187094688416 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919804 chr12:57919806 nonsynonymous SNV 0.979 1 23 hm5C_associated_SNPs_18559 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157817 hm5C_site_19889 DeepMRMD:1;iRNA_m5C:0.999536712157817 19890 chr12 57919806 57919806 1 + C T CESC 57919809 + 57919789 57919829 41 CCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTC CCGTGCCCAGGCACCCTTAGCTTCCCACTCCTCATCACTTC < 41bp 1 0.125104180444729 1 0.169918328523636 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919809 chr12:57919806 nonsynonymous SNV 0.979 1 18 hm5C_associated_SNPs_18560 0 0 1 0 0 chromatin 1 0.500231643921276 1 0.999536712157449 hm5C_site_19890 DeepMRMD:1;iRNA_m5C:0.999536712157449 19891 chr12 57919806 57919806 1 + C T CESC 57919812 + 57919792 57919832 41 TGCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTC TGCCCAGGCACCCTTAGCTTCCCACTCCTCATCACTTCGTC < 41bp 1 0.0707994711933376 1 0.0916458070278168 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919812 chr12:57919806 nonsynonymous SNV 0.979 1 15 hm5C_associated_SNPs_18561 0 0 1 0 0 chromatin 1 0.50023164392038 1 0.99953671215924 hm5C_site_19891 DeepMRMD:1;iRNA_m5C:0.99953671215924 19892 chr12 57919806 57919806 1 + C T CESC 57919813 + 57919793 57919833 41 GCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCC GCCCAGGCACCCTTAGCTTCCCACTCCTCATCACTTCGTCC < 41bp 1 0.0812558445213103 1 0.040365070104599 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919813 chr12:57919806 nonsynonymous SNV 0.979 1 14 hm5C_associated_SNPs_18562 0 0 1 0 0 chromatin 1 0.500231643921621 1 0.999536712156758 hm5C_site_19892 DeepMRMD:1;iRNA_m5C:0.999536712156758 19893 chr12 57919806 57919806 1 + C T CESC 57919814 + 57919794 57919834 41 CCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCCC CCCAGGCACCCTTAGCTTCCCACTCCTCATCACTTCGTCCC < 41bp 1 0.158693280049814 1 0.0605741143226624 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919814 chr12:57919806 nonsynonymous SNV 0.979 1 13 hm5C_associated_SNPs_18563 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19893 DeepMRMD:1;iRNA_m5C:0.999536712157815 19894 chr12 57919806 57919806 1 + C T CESC 57919816 + 57919796 57919836 41 CAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCCCTC CAGGCACCCTTAGCTTCCCACTCCTCATCACTTCGTCCCTC < 41bp 1 0.303397222530993 1 0.281448900699615 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919816 chr12:57919806 nonsynonymous SNV 0.979 1 11 hm5C_associated_SNPs_18564 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_19894 DeepMRMD:1;iRNA_m5C:0.999536712157816 19895 chr12 22812005 22812005 1 + C T CESC 22811993 + 22811973 22812013 41 ATCCATGCTATTCATGCACACAATGGCTGGATCCCCAAATC ATCCATGCTATTCATGCACACAATGGCTGGATTCCCAAATC < 41bp 1 0.426947932070911 1 0.314227432012558 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22811993 chr12:22812005 synonymous SNV . 0 33 hm5C_associated_SNPs_18565 0 0 1 0 2 Ribosome 1 0.500231647497423 1 0.999536705005154 hm5C_site_19895 DeepMRMD:1;iRNA_m5C:0.999536705005154 19896 chr1 29068970 29068970 1 + C G CESC 29068982 + 29068962 29069002 41 CAGTCCCTCCATTGGCTTCTCCTATTCTTTGGGTGAAGCTG CAGTCCCTGCATTGGCTTCTCCTATTCTTTGGGTGAAGCTG < 41bp 1 0.0600790004120553 1 0.141016393899918 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29068982 chr1:29068970 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_18566 0 0 1 0 1 Cytosol 1 0.500231643929625 1 0.999536712140749 hm5C_site_19896 DeepMRMD:1;iRNA_m5C:0.999536712140749 19897 chr2 32773058 32773058 1 + G T CESC 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGTAACAT < 41bp 1 0.165938189849673 1 0.623045742511749 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773058 stopgain 0.978 1 36 hm5C_associated_SNPs_18568 0 0 1 0 1 Nucleus 1 0.500231673207133 0.753908514976502 0.999536653585733 hm5C_site_19897 DeepMRMD:0.753908514976502;iRNA_m5C:0.999536653585733 19898 chr10 134016280 134016280 1 + G A CESC 134016266 + 134016246 134016286 41 TTTGTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC TTTGTCACCCCGGGGGCGGGCCGCTTCGTCCCTCAGAAAAC < 41bp 1 0.194843666916844 1 0.239059448242188 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016266 chr10:134016280 nonsynonymous SNV 0.969 3 35 hm5C_associated_SNPs_18569 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19898 DeepMRMD:1;iRNA_m5C:0.999536712157815 19899 chr16 1550679 1550679 1 + G A CESC 1550684 + 1550664 1550704 41 CCGGATCCACCCCGAGGGGCCTCCCCTGAAATTCCAGGTGA CCGGATCCACCCCGAAGGGCCTCCCCTGAAATTCCAGGTGA < 41bp 1 0.313321228876523 1 0.104963093996048 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550684 chr16:1550679 synonymous SNV . 0 16 hm5C_associated_SNPs_18570 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19899 DeepMRMD:1;iRNA_m5C:0.999536712157815 19900 chr12 124239052 124239052 1 + T G CESC 124239064 + 124239044 124239084 41 CTCCTACCTGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC CTCCTACCGGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC < 41bp 1 0.315940587381828 1 0.264851450920105 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239064 chr12:124239052 nonsynonymous SNV 1.000 5 9 hm5C_associated_SNPs_18571 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19900 DeepMRMD:1;iRNA_m5C:0.999536712157815 19901 chr1 201163368 201163368 1 + G C CESC 201163360 + 201163340 201163380 41 CCCTGAAGGCTGCAGCACGCCGGACTTTGAGCAGAAGCCCG CCCTGAAGGCTGCAGCACGCCGGACTTTCAGCAGAAGCCCG < 41bp 1 0.297826217490513 1 0.301532089710236 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201163360 chr1:201163368 nonsynonymous SNV 0.963 0 29 hm5C_associated_SNPs_18573 0 0 0 0 1 exosome 1 0.500231164457316 1 0.999537671085367 hm5C_site_19901 DeepMRMD:1;iRNA_m5C:0.999537671085367 19902 chr3 9976232 9976232 1 + C G CESC 9976249 + 9976229 9976269 41 AGTCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGC AGTGTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGC < 41bp 1 0.528939659129421 1 0.232689678668976 experiment 0.942120681741159 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976249 chr3:9976232 nonsynonymous SNV 0.596 1 4 hm5C_associated_SNPs_18574 0 0 1 0 1 chromatin 1 0.500231644278637 1 0.999536711442726 hm5C_site_19902 DeepMRMD:1;iRNA_m5C:0.999536711442726 19903 chr3 9976232 9976232 1 + C G CESC 9976251 + 9976231 9976271 41 TCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCG TGTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCG < 41bp 1 0.032879649094766 1 0.0441755652427673 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976251 chr3:9976232 nonsynonymous SNV 0.596 1 2 hm5C_associated_SNPs_18575 0 0 1 0 1 chromatin 1 0.500232625845567 1 0.999534748308866 hm5C_site_19903 DeepMRMD:1;iRNA_m5C:0.999534748308866 19904 chr3 9976232 9976232 1 + C G CESC 9976252 + 9976232 9976272 41 CTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCGG GTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCGG < 41bp 1 0.223566961055853 1 0.216767311096191 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976252 chr3:9976232 nonsynonymous SNV 0.596 1 1 hm5C_associated_SNPs_18576 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_19904 DeepMRMD:1;iRNA_m5C:0.999536712157815 19905 chr1 55452073 55452073 1 + G C CESC 55452081 + 55452061 55452101 41 CACCTCTCCAGAGACCTGTACTACCTCACTGTGGAGTCCTC CACCTCTCCAGACACCTGTACTACCTCACTGTGGAGTCCTC < 41bp 1 0.0955609350115326 1 0.0851924419403076 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55452081 chr1:55452073 nonsynonymous SNV 0.997 1 13 hm5C_associated_SNPs_18577 0 0 0 0 1 Cytosol 1 0.500231664176555 1 0.999536671646889 hm5C_site_19905 DeepMRMD:1;iRNA_m5C:0.999536671646889 19906 chr2 189458715 189458715 1 + G A CESC 189458701 + 189458681 189458721 41 GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCAACCCGT < 41bp 1 0.577417016573163 1 0.133650541305542 experiment 0.845165966853675 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458701 chr2:189458715 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_18578 0 0 1 0 1 Ribosome 1 0.5002316442553 1 0.999536711489399 hm5C_site_19906 DeepMRMD:1;iRNA_m5C:0.999536711489399 19907 chr2 189458715 189458715 1 + G A CESC 189458714 + 189458694 189458734 41 GAAGGCACAGTATTTTGTCTCGACCCGTTAGACAGTAGGTG GAAGGCACAGTATTTTGTCTCAACCCGTTAGACAGTAGGTG < 41bp 1 0.285880111501969 1 0.221132904291153 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458714 chr2:189458715 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_18579 0 0 1 0 1 Ribosome 1 0.500231643824501 1 0.999536712350998 hm5C_site_19907 DeepMRMD:1;iRNA_m5C:0.999536712350998 19908 chr16 24835021 24835021 1 + C A CESC 24835001 + 24834981 24835021 41 CGGCACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCC CGGCACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCA < 41bp 1 0.102470379165911 1 0.0798925459384918 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835001 chr16:24835021 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_18580 0 0 0 0 0 Nucleus 1 0.500231643921059 1 0.999536712157882 hm5C_site_19908 DeepMRMD:1;iRNA_m5C:0.999536712157882 19909 chr16 24835021 24835021 1 + C A CESC 24835002 + 24834982 24835022 41 GGCACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCCT GGCACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCAT < 41bp 1 0.123503300980013 1 0.311421543359756 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835002 chr16:24835021 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_18581 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19909 DeepMRMD:1;iRNA_m5C:0.999536712157815 19910 chr16 24835021 24835021 1 + C A CESC 24835003 + 24834983 24835023 41 GCACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCCTG GCACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCATG < 41bp 1 0.490229595566645 1 0.779604613780975 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835003 chr16:24835021 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_18582 0 0 0 0 0 Nucleus 1 0.500231643919277 0.44079077243805 0.999536712161445 hm5C_site_19910 DeepMRMD:0.44079077243805;iRNA_m5C:0.999536712161445 19911 chr16 24835021 24835021 1 + C A CESC 24835004 + 24834984 24835024 41 CACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCCTGT CACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCATGT < 41bp 1 0.387014693779732 1 0.447355628013611 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835004 chr16:24835021 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_18583 0 0 0 0 0 Nucleus 1 0.500231643921193 1 0.999536712157614 hm5C_site_19911 DeepMRMD:1;iRNA_m5C:0.999536712157614 19912 chr16 24835021 24835021 1 + C A CESC 24835030 + 24835010 24835050 41 ATTCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCC ATTCCACAAGCATGTGGGGTCCCCCAAGCAGCAGCGACCCC < 41bp 1 0.135012791403893 1 0.0876142978668213 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835030 chr16:24835021 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_18584 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19912 DeepMRMD:1;iRNA_m5C:0.999536712157815 19913 chr16 24835021 24835021 1 + C A CESC 24835031 + 24835011 24835051 41 TTCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCC TTCCACAAGCATGTGGGGTCCCCCAAGCAGCAGCGACCCCC < 41bp 1 0.553534549282593 1 0.266166359186172 experiment 0.892930901434815 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835031 chr16:24835021 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_18585 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19913 DeepMRMD:1;iRNA_m5C:0.999536712157815 19914 chr16 24835021 24835021 1 + C A CESC 24835032 + 24835012 24835052 41 TCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCG TCCACAAGCATGTGGGGTCCCCCAAGCAGCAGCGACCCCCG < 41bp 1 0.6736152274274 1 0.241064488887787 experiment 0.6527695451452 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835032 chr16:24835021 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_18586 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19914 DeepMRMD:1;iRNA_m5C:0.999536712157815 19915 chr16 24835021 24835021 1 + C A CESC 24835033 + 24835013 24835053 41 CCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCGA CCACAAGCATGTGGGGTCCCCCAAGCAGCAGCGACCCCCGA < 41bp 1 0.230396291652625 1 0.223192065954208 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835033 chr16:24835021 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_18587 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19915 DeepMRMD:1;iRNA_m5C:0.999536712157815 19916 chr16 24835021 24835021 1 + C A CESC 24835034 + 24835014 24835054 41 CACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCGAG CACAAGCATGTGGGGTCCCCCAAGCAGCAGCGACCCCCGAG < 41bp 1 0.527873473947361 1 0.470582038164139 experiment 0.944253052105278 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835034 chr16:24835021 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_18588 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_19916 DeepMRMD:1;iRNA_m5C:0.999536712157815 19917 chr6 109763769 109763769 1 + G A CESC 109763767 + 109763747 109763787 41 TCCATGCCGAATACAATCGACAGAAGGACATCTACCTAGCA TCCATGCCGAATACAATCGACAAAAGGACATCTACCTAGCA < 41bp 1 0.385875990577089 1 0.366760075092316 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763767 chr6:109763769 synonymous SNV . 0 23 hm5C_associated_SNPs_18589 0 0 1 0 2 chromatin 1 0.50023164398955 1 0.999536712020899 hm5C_site_19917 DeepMRMD:1;iRNA_m5C:0.999536712020899 19918 chr3 126708574 126708574 1 + G A CESC 126708579 + 126708559 126708599 41 TCCTGCTACCGTGGTGAGGGCAAGCTCTCCCTGCCGTGGCT TCCTGCTACCGTGGTAAGGGCAAGCTCTCCCTGCCGTGGCT < 41bp 1 0.119524476617446 1 0.360177606344223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126708579 chr3:126708574 nonsynonymous SNV 0.389 1 16 hm5C_associated_SNPs_18590 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_19918 DeepMRMD:1;iRNA_m5C:0.999536712157814 19919 chr19 40718780 40718780 1 + G A CESC 40718786 + 40718766 40718806 41 GGACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTG GGACATGGAGCCGCAGTGGGCCCCCAAAGAAGGAAGAACTG < 41bp 1 0.0643226417011435 1 0.114830166101456 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718786 chr19:40718780 nonsynonymous SNV 0.982 0 15 hm5C_associated_SNPs_18591 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921081 1 0.999536712157838 hm5C_site_19919 DeepMRMD:1;iRNA_m5C:0.999536712157838 19920 chr19 40718780 40718780 1 + G A CESC 40718787 + 40718767 40718807 41 GACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGG GACATGGAGCCGCAGTGGGCCCCCAAAGAAGGAAGAACTGG < 41bp 1 0.165976144963392 1 0.242102354764938 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718787 chr19:40718780 nonsynonymous SNV 0.982 0 14 hm5C_associated_SNPs_18592 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643928525 1 0.999536712142951 hm5C_site_19920 DeepMRMD:1;iRNA_m5C:0.999536712142951 19921 chr19 40718780 40718780 1 + G A CESC 40718788 + 40718768 40718808 41 ACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGT ACATGGAGCCGCAGTGGGCCCCCAAAGAAGGAAGAACTGGT < 41bp 1 0.171099406189244 1 0.490238159894943 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718788 chr19:40718780 nonsynonymous SNV 0.982 0 13 hm5C_associated_SNPs_18593 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19921 DeepMRMD:1;iRNA_m5C:0.999536712157815 19922 chr19 40718780 40718780 1 + G A CESC 40718789 + 40718769 40718809 41 CATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTC CATGGAGCCGCAGTGGGCCCCCAAAGAAGGAAGAACTGGTC < 41bp 1 0.152316201767681 1 0.677771687507629 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718789 chr19:40718780 nonsynonymous SNV 0.982 0 12 hm5C_associated_SNPs_18594 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164392137 0.644456624984742 0.99953671215726 hm5C_site_19922 DeepMRMD:0.644456624984742;iRNA_m5C:0.99953671215726 19923 chr19 40718780 40718780 1 + G A CESC 40718790 + 40718770 40718810 41 ATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTCG ATGGAGCCGCAGTGGGCCCCCAAAGAAGGAAGAACTGGTCG < 41bp 1 0.318076269751557 1 0.806738495826721 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718790 chr19:40718780 nonsynonymous SNV 0.982 0 11 hm5C_associated_SNPs_18595 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.386523008346558 0.999536712157815 hm5C_site_19923 DeepMRMD:0.386523008346558;iRNA_m5C:0.999536712157815 19924 chr19 14040251 14040251 1 + G A CESC 14040234 + 14040214 14040254 41 CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCAGAA < 41bp 1 0.390043214649329 1 0.593384206295013 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040234 chr19:14040251 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_18596 0 0 0 0 2 chromatin 1 0.500222968158934 0.813231587409974 0.999554063682131 hm5C_site_19924 DeepMRMD:0.813231587409974;iRNA_m5C:0.999554063682131 19925 chr9 135947029 135947029 1 + G A CESC 135947013 + 135946993 135947033 41 CCCGTGACCCCCACGGGTGACTCCGAGACCGCCCCCGTGCC CCCGTGACCCCCACGGGTGACTCCGAGACCGCCCCCATGCC < 41bp 1 0.630636700307597 1 0.293893933296204 experiment 0.738726599384806 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947013 chr9:135947029 nonsynonymous SNV 0.000 0 37 hm5C_associated_SNPs_18597 0 0 0 0 0 exosome 1 0.500231621271209 1 0.999536757457582 hm5C_site_19925 DeepMRMD:1;iRNA_m5C:0.999536757457582 19926 chr9 135947029 135947029 1 + G A CESC 135947015 + 135946995 135947035 41 CGTGACCCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGC CGTGACCCCCACGGGTGACTCCGAGACCGCCCCCATGCCGC < 41bp 1 0.698813701510904 1 0.755703210830688 experiment 0.602372596978192 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947015 chr9:135947029 nonsynonymous SNV 0.000 0 35 hm5C_associated_SNPs_18598 0 0 0 0 0 exosome 1 0.500231647848177 0.488593578338624 0.999536704303646 hm5C_site_19926 DeepMRMD:0.488593578338624;iRNA_m5C:0.999536704303646 19927 chr9 135947029 135947029 1 + G A CESC 135947021 + 135947001 135947041 41 CCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGG CCCCACGGGTGACTCCGAGACCGCCCCCATGCCGCCCACGG < 41bp 1 0.313793670225348 1 0.144943684339523 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947021 chr9:135947029 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_18599 0 0 0 0 0 exosome 1 0.500231643919906 1 0.999536712160188 hm5C_site_19927 DeepMRMD:1;iRNA_m5C:0.999536712160188 19928 chr9 135947029 135947029 1 + G A CESC 135947022 + 135947002 135947042 41 CCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGG CCCACGGGTGACTCCGAGACCGCCCCCATGCCGCCCACGGG < 41bp 1 0.516609667778647 1 0.363330662250519 experiment 0.966780664442706 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947022 chr9:135947029 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_18600 0 0 0 0 0 exosome 1 0.500231656040552 1 0.999536687918896 hm5C_site_19928 DeepMRMD:1;iRNA_m5C:0.999536687918896 19929 chr9 135947029 135947029 1 + G A CESC 135947024 + 135947004 135947044 41 CACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTG CACGGGTGACTCCGAGACCGCCCCCATGCCGCCCACGGGTG < 41bp 1 0.257631817173644 1 0.0712000131607056 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947024 chr9:135947029 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_18601 0 0 0 0 0 exosome 1 0.500231713000217 1 0.999536573999565 hm5C_site_19929 DeepMRMD:1;iRNA_m5C:0.999536573999565 19930 chr9 135947029 135947029 1 + G A CESC 135947025 + 135947005 135947045 41 ACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGA ACGGGTGACTCCGAGACCGCCCCCATGCCGCCCACGGGTGA < 41bp 1 0.640738707982681 1 0.302203238010406 experiment 0.718522584034639 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947025 chr9:135947029 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_18602 0 0 0 0 0 exosome 1 0.500231644847519 1 0.999536710304962 hm5C_site_19930 DeepMRMD:1;iRNA_m5C:0.999536710304962 19931 chr9 135947029 135947029 1 + G A CESC 135947026 + 135947006 135947046 41 CGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGAC CGGGTGACTCCGAGACCGCCCCCATGCCGCCCACGGGTGAC < 41bp 1 0.233453530659007 1 0.0279713571071625 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947026 chr9:135947029 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_18603 0 0 0 0 0 exosome 1 0.500231811988513 1 0.999536376022975 hm5C_site_19931 DeepMRMD:1;iRNA_m5C:0.999536376022975 19932 chr9 135947029 135947029 1 + G A CESC 135947027 + 135947007 135947047 41 GGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACT GGGTGACTCCGAGACCGCCCCCATGCCGCCCACGGGTGACT < 41bp 1 0.152655069795665 1 0.150475919246674 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947027 chr9:135947029 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_18604 0 0 0 0 0 exosome 1 0.500231643921122 1 0.999536712157755 hm5C_site_19932 DeepMRMD:1;iRNA_m5C:0.999536712157755 19933 chr9 135947029 135947029 1 + G A CESC 135947028 + 135947008 135947048 41 GGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTC GGTGACTCCGAGACCGCCCCCATGCCGCCCACGGGTGACTC < 41bp 1 0.36022200511617 1 0.117049932479858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947028 chr9:135947029 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_18605 0 0 0 0 0 exosome 1 0.500231890499758 1 0.999536219000484 hm5C_site_19933 DeepMRMD:1;iRNA_m5C:0.999536219000484 19934 chr9 135947029 135947029 1 + G A CESC 135947032 + 135947012 135947052 41 ACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGG ACTCCGAGACCGCCCCCATGCCGCCCACGGGTGACTCCGGG < 41bp 1 0.408474564432605 1 0.720349669456482 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947032 chr9:135947029 nonsynonymous SNV 0.000 0 18 hm5C_associated_SNPs_18606 0 0 0 0 0 exosome 1 0.500231650986712 0.559300661087036 0.999536698026576 hm5C_site_19934 DeepMRMD:0.559300661087036;iRNA_m5C:0.999536698026576 19935 chr9 135947029 135947029 1 + G A CESC 135947033 + 135947013 135947053 41 CTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGG CTCCGAGACCGCCCCCATGCCGCCCACGGGTGACTCCGGGG < 41bp 1 0.540543101480167 1 0.422598630189896 experiment 0.918913797039666 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947033 chr9:135947029 nonsynonymous SNV 0.000 0 17 hm5C_associated_SNPs_18607 0 0 0 0 0 exosome 1 0.500231644064632 1 0.999536711870737 hm5C_site_19935 DeepMRMD:1;iRNA_m5C:0.999536711870737 19936 chr9 135947029 135947029 1 + G A CESC 135947035 + 135947015 135947055 41 CCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC CCGAGACCGCCCCCATGCCGCCCACGGGTGACTCCGGGGCC < 41bp 1 0.270390886280433 1 0.0958392918109894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947035 chr9:135947029 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_18608 0 0 0 0 0 exosome 1 0.500231634415189 1 0.999536731169622 hm5C_site_19936 DeepMRMD:1;iRNA_m5C:0.999536731169622 19937 chr9 135947029 135947029 1 + G A CESC 135947036 + 135947016 135947056 41 CGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC CGAGACCGCCCCCATGCCGCCCACGGGTGACTCCGGGGCCC < 41bp 1 0.463626999510742 1 0.0994262099266052 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947036 chr9:135947029 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_18609 0 0 0 0 0 exosome 1 0.500231647911849 1 0.999536704176302 hm5C_site_19937 DeepMRMD:1;iRNA_m5C:0.999536704176302 19938 chr12 58001319 58001319 1 + G A CESC 58001336 + 58001316 58001356 41 GACGCCACCCTCCTACTGCCCAGCTATGAGAAGTACGGCAC GACACCACCCTCCTACTGCCCAGCTATGAGAAGTACGGCAC < 41bp 1 0.557982425217031 1 0.0788358151912689 experiment 0.884035149565937 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DTX3 ENSG00000178498 CDS Human protein_coding chr12:58001336 chr12:58001319 nonsynonymous SNV 0.997 1 4 hm5C_associated_SNPs_18612 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19938 DeepMRMD:1;iRNA_m5C:0.999536712157815 19939 chr22 31266626 31266626 1 + A T CESC 31266632 + 31266612 31266652 41 GAAGGTGGTGAATGAGCGGGCCACCCTCTTCCGCATCACAT GAAGGTGGTGAATGTGCGGGCCACCCTCTTCCGCATCACAT < 41bp 1 0.0465415080975144 1 0.0910769104957581 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31266632 chr22:31266626 nonsynonymous SNV 0.934 4 15 hm5C_associated_SNPs_18613 0 0 0 0 1 Cytosol 1 0.50023164392076 1 0.999536712158481 hm5C_site_19939 DeepMRMD:1;iRNA_m5C:0.999536712158481 19940 chr5 176016579 176016579 1 + G A CESC 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTCTCCACACCAAAGGAGGAGGTGGGCGCCA < 41bp 1 0.488125530523755 1 0.698651313781738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016579 synonymous SNV . 0 22 hm5C_associated_SNPs_18614 0 0 0 0 2 Exosome 1 0.500231644278943 0.602697372436524 0.999536711442115 hm5C_site_19940 DeepMRMD:0.602697372436524;iRNA_m5C:0.999536711442115 19941 chr9 131386727 131386727 1 + C T CESC 131386723 + 131386703 131386743 41 CTGGATGAGAACTCGGCCTTCCTTCAGTTCAACTGGAAGGC CTGGATGAGAACTCGGCCTTCCTTTAGTTCAACTGGAAGGC < 41bp 1 0.0214402267211009 1 0.0585028827190399 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131386723 chr9:131386727 stopgain 0.999 1 25 hm5C_associated_SNPs_18616 0 0 1 0 1 Nucleus 1 0.500231643818337 1 0.999536712363327 hm5C_site_19941 DeepMRMD:1;iRNA_m5C:0.999536712363327 19942 chr1 28862519 28862519 1 + C T CESC 28862499 + 28862479 28862519 41 TTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTC TTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTT < 41bp 1 0.548685240599243 1 0.0960194170475006 experiment 0.902629518801515 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862499 chr1:28862519 synonymous SNV . 0 41 hm5C_associated_SNPs_18618 0 0 1 0 1 Ribosome 1 0.500231643980403 1 0.999536712039194 hm5C_site_19942 DeepMRMD:1;iRNA_m5C:0.999536712039194 19943 chr11 831574 831574 1 + C T CESC 831584 + 831564 831604 41 GGGACGCCTGCGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG GGGACGCCTGTGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG < 41bp 1 0.672268089566123 1 0.769412219524384 experiment 0.655463820867753 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831584 chr11:831574 synonymous SNV . 0 11 hm5C_associated_SNPs_18619 0 0 1 0 1 Cytosol 1 0.500231643921092 0.461175560951232 0.999536712157815 hm5C_site_19943 DeepMRMD:0.461175560951232;iRNA_m5C:0.999536712157815 19944 chr11 67258438 67258438 1 + C T CESC 67258452 + 67258432 67258472 41 AAAGCCCGGTTCCGGGGGATCTTCTCCCATTGACAGGAGCA AAAGCCTGGTTCCGGGGGATCTTCTCCCATTGACAGGAGCA < 41bp 1 0.141344339434654 1 0.111422181129456 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AIP ENSG00000110711 CDS Human protein_coding chr11:67258452 chr11:67258438 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_18620 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19944 DeepMRMD:1;iRNA_m5C:0.999536712157815 19945 chr2 71660368 71660368 1 + A G CESC 71660380 + 71660360 71660400 41 GAAAAAGCAATGACAAATCACTGCAAGAGTACACGTCATAA GAAAAAGCGATGACAAATCACTGCAAGAGTACACGTCATAA < 41bp 1 0.688829679407364 1 0.389955699443817 experiment 0.622340641185272 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71660380 chr2:71660368 synonymous SNV . 0 9 hm5C_associated_SNPs_18621 0 0 1 3 3 Nucleus 1 0.500226318354836 1 0.999547363290328 hm5C_site_19945 DeepMRMD:1;iRNA_m5C:0.999547363290328 19946 chr17 37358641 37358641 1 + C G CESC 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTGGATGCCG < 41bp 1 0.102947753661812 1 0.0401149988174438 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358641 nonsynonymous SNV 0.988 2 34 hm5C_associated_SNPs_18622 0 0 1 0 2 chromatin 1 0.500231644307435 1 0.99953671138513 hm5C_site_19946 DeepMRMD:1;iRNA_m5C:0.99953671138513 19947 chr17 37358641 37358641 1 + C G CESC 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTGGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA < 41bp 1 0.253987050812396 1 0.0705798268318176 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358641 nonsynonymous SNV 0.988 2 5 hm5C_associated_SNPs_18623 0 0 1 0 2 chromatin 1 0.500231643922125 1 0.999536712155749 hm5C_site_19947 DeepMRMD:1;iRNA_m5C:0.999536712155749 19948 chr3 52233277 52233277 1 + G A CESC 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCGCCACTGCCCATTCTTATCCCGAGT < 41bp 1 0.361623683113007 1 0.193198621273041 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233277 nonsynonymous SNV 0.994 2 20 hm5C_associated_SNPs_18624 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_19948 DeepMRMD:1;iRNA_m5C:0.999536712157815 19949 chr4 26407815 26407815 1 + T C CESC 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ACTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT < 41bp 1 0.34659496618693 1 0.259294748306274 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407815 synonymous SNV . 0 2 hm5C_associated_SNPs_18625 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921114 1 0.999536712157772 hm5C_site_19949 DeepMRMD:1;iRNA_m5C:0.999536712157772 19950 chr4 20568984 20568984 1 + G A CESC 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTGACTTTTACCAATGCACCTGTCCATATGG < 41bp 1 0.0700011306361123 1 0.179872900247574 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568984 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_18626 0 0 1 0 2 Ribosome 1 0.500231643095648 1 0.999536713808703 hm5C_site_19950 DeepMRMD:1;iRNA_m5C:0.999536713808703 19951 chr4 20568984 20568984 1 + G A CESC 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTGACTTTTACCAATGCACCTGTCCATATGGT < 41bp 1 0.127602436814906 1 0.408415645360947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568984 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_18627 0 0 1 0 2 Ribosome 1 0.500230848896474 1 0.999538302207052 hm5C_site_19951 DeepMRMD:1;iRNA_m5C:0.999538302207052 19952 chr10 118306822 118306822 1 + C T CESC 118306831 + 118306811 118306851 41 GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC GAAGTTTGCTATGAAAGACTCGGCTGCTTCAGTGATGACTC < 41bp 1 0.659448019078728 1 0.31408417224884 experiment 0.681103961842544 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306831 chr10:118306822 synonymous SNV . 0 12 hm5C_associated_SNPs_18628 0 0 0 0 1 unknown 1 0.500229523622655 1 0.99954095275469 hm5C_site_19952 DeepMRMD:1;iRNA_m5C:0.99954095275469 19953 chr8 25149596 25149596 1 + G A CESC 25149584 + 25149564 25149604 41 CAGCTGCAGCAGATGACGTACAGCCTGATCGAGTGGCGGTC CAGCTGCAGCAGATGACGTACAGCCTGATCGAATGGCGGTC < 41bp 1 0.236718471603999 1 0.473519414663315 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149584 chr8:25149596 synonymous SNV . 0 33 hm5C_associated_SNPs_18629 0 0 1 0 2 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_19953 DeepMRMD:1;iRNA_m5C:0.999536712157818 19954 chr8 25149596 25149596 1 + G A CESC 25149611 + 25149591 25149631 41 ATCGAGTGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA ATCGAATGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA < 41bp 1 0.350792830919392 1 0.620818972587585 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149611 chr8:25149596 synonymous SNV . 0 6 hm5C_associated_SNPs_18630 0 0 1 0 2 Nucleus 1 0.500231643602588 0.75836205482483 0.999536712794824 hm5C_site_19954 DeepMRMD:0.75836205482483;iRNA_m5C:0.999536712794824 19955 chr15 42052697 42052697 1 + C G CESC 42052715 + 42052695 42052735 41 TCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGT TCGAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGT < 41bp 1 0.0210569432172374 1 0.0432591736316681 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42052715 chr15:42052697 synonymous SNV . 0 3 hm5C_associated_SNPs_18631 0 0 1 0 1 Cytosol 1 0.500231643921068 1 0.999536712157863 hm5C_site_19955 DeepMRMD:1;iRNA_m5C:0.999536712157863 19956 chr11 74329661 74329661 1 + T C CESC 74329645 + 74329625 74329665 41 GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGCCACA < 41bp 1 0.480343735078389 1 0.729762434959412 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329645 chr11:74329661 nonsynonymous SNV 0.960 0 37 hm5C_associated_SNPs_18632 0 0 1 0 1 Nucleus 1 0.500231464146861 0.540475130081176 0.999537071706277 hm5C_site_19956 DeepMRMD:0.540475130081176;iRNA_m5C:0.999537071706277 19957 chr11 74329661 74329661 1 + T C CESC 74329667 + 74329647 74329687 41 AAAAGTTTGAGCAGTCACATCTTCACATGTCAAGTGAGACA AAAAGTTTGAGCAGCCACATCTTCACATGTCAAGTGAGACA < 41bp 1 0.393833606216633 1 0.174960494041443 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329667 chr11:74329661 nonsynonymous SNV 0.960 0 15 hm5C_associated_SNPs_18633 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_19957 DeepMRMD:1;iRNA_m5C:0.999536712157816 19958 chr11 74329661 74329661 1 + T C CESC 74329670 + 74329650 74329690 41 AGTTTGAGCAGTCACATCTTCACATGTCAAGTGAGACACAA AGTTTGAGCAGCCACATCTTCACATGTCAAGTGAGACACAA < 41bp 1 0.632368866241796 1 0.191314458847046 experiment 0.735262267516408 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329670 chr11:74329661 nonsynonymous SNV 0.960 0 12 hm5C_associated_SNPs_18634 0 0 1 0 1 Nucleus 1 0.500415443009309 1 0.999169113981383 hm5C_site_19958 DeepMRMD:1;iRNA_m5C:0.999169113981383 19959 chr2 182785383 182785383 1 + G T CESC 182785364 + 182785344 182785384 41 CGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGG CGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATTG < 41bp 1 0.0597213044166087 1 0.0251990854740143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182785364 chr2:182785383 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_18635 0 0 0 0 2 Ribosome 1 0.500231462736577 1 0.999537074526846 hm5C_site_19959 DeepMRMD:1;iRNA_m5C:0.999537074526846 19960 chr17 33592730 33592730 1 + G A CESC 33592726 + 33592706 33592746 41 GTTACTACAGATCGGTGATGCGTCGGATGTTCTAACCGATC GTTACTACAGATCGGTGATGCGTCAGATGTTCTAACCGATC < 41bp 1 0.507071552309487 1 0.512678980827332 experiment 0.985856895381026 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLFN5 ENSG00000166750 CDS Human protein_coding chr17:33592726 chr17:33592730 synonymous SNV . 0 25 hm5C_associated_SNPs_18636 0 0 0 0 0 nucleus 1 0.500231648683536 0.974642038345336 0.999536702632928 hm5C_site_19960 DeepMRMD:0.974642038345336;iRNA_m5C:0.999536702632928 19961 chr19 46887119 46887119 1 + C T CESC 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCGAGCTCAACGGTTTACCCTTGGAGAC < 41bp 1 0.586155038076544 1 0.290757685899734 experiment 0.827689923846912 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887119 nonsynonymous SNV 0.993 4 35 hm5C_associated_SNPs_18638 0 0 1 0 3 Ribosome 1 0.500231643920369 1 0.999536712159262 hm5C_site_19961 DeepMRMD:1;iRNA_m5C:0.999536712159262 19962 chr3 122419839 122419839 1 + G A CESC 122419849 + 122419829 122419869 41 GACTTGGCACGGCTTCCTGTCGATGTGGTGGTGAATGCATC GACTTGGCACAGCTTCCTGTCGATGTGGTGGTGAATGCATC < 41bp 1 0.312132363675936 1 0.517630398273468 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARP14 ENSG00000173193 CDS Human protein_coding chr3:122419849 chr3:122419839 nonsynonymous SNV 0.000 0 11 hm5C_associated_SNPs_18639 0 0 1 0 0 Nucleus 1 0.500227747454371 0.964739203453064 0.999544505091257 hm5C_site_19962 DeepMRMD:0.964739203453064;iRNA_m5C:0.999544505091257 19963 chr11 108206586 108206586 1 + G C CESC 108206601 + 108206581 108206621 41 GACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT GACCTCAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT < 41bp 1 0.160592139741537 1 0.159273445606232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108206601 chr11:108206586 synonymous SNV . 0 6 hm5C_associated_SNPs_18640 0 0 1 0 1 Nucleus 1 0.500231637489166 1 0.999536725021667 hm5C_site_19963 DeepMRMD:1;iRNA_m5C:0.999536725021667 19964 chr1 36026505 36026505 1 + A T CESC 36026504 + 36026484 36026524 41 GCCCCTCTTTTTGCCCCCGACAACCGTGCCCCCTGAATGCT GCCCCTCTTTTTGCCCCCGACTACCGTGCCCCCTGAATGCT < 41bp 1 0.214742836793694 1 0.0716183185577393 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36026504 chr1:36026505 synonymous SNV . 0 22 hm5C_associated_SNPs_18642 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19964 DeepMRMD:1;iRNA_m5C:0.999536712157815 19965 chr1 36026505 36026505 1 + A T CESC 36026508 + 36026488 36026528 41 CTCTTTTTGCCCCCGACAACCGTGCCCCCTGAATGCTACCG CTCTTTTTGCCCCCGACTACCGTGCCCCCTGAATGCTACCG < 41bp 1 0.197013390445996 1 0.508080542087555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36026508 chr1:36026505 synonymous SNV . 0 18 hm5C_associated_SNPs_18643 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.98383891582489 0.999536712157815 hm5C_site_19965 DeepMRMD:0.98383891582489;iRNA_m5C:0.999536712157815 19966 chr14 61285492 61285492 1 + C T CESC 61285479 + 61285459 61285499 41 TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATCTACCCAA TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATTTACCCAA < 41bp 1 0.340652443748176 1 0.417488694190979 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61285479 chr14:61285492 nonsynonymous SNV 0.852 1 34 hm5C_associated_SNPs_18644 0 0 1 0 2 Ribosome 1 0.500231698929123 1 0.999536602141755 hm5C_site_19966 DeepMRMD:1;iRNA_m5C:0.999536602141755 19967 chr19 45162113 45162113 1 + C G CESC 45162132 + 45162112 45162152 41 TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCACTGT TGTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCACTGT < 41bp 1 0.633036620456527 1 0.597163438796997 experiment 0.733926759086945 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162132 chr19:45162113 nonsynonymous SNV 0.001 1 2 hm5C_associated_SNPs_18645 0 0 1 0 1 Ribosome 1 0.500231643921092 0.805673122406006 0.999536712157816 hm5C_site_19967 DeepMRMD:0.805673122406006;iRNA_m5C:0.999536712157816 19968 chr9 130575602 130575602 1 + G T CESC 130575587 + 130575567 130575607 41 GCCCGGACCTCTGGAGTGCCCCCAGCCCAGAGCCCGGTGGG GCCCGGACCTCTGGAGTGCCCCCAGCCCAGAGCCCTGTGGG < 41bp 1 0.537292640855137 1 0.384001791477203 experiment 0.925414718289726 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130575587 chr9:130575602 nonsynonymous SNV 0.005 1 36 hm5C_associated_SNPs_18646 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_19968 DeepMRMD:1;iRNA_m5C:0.999536712157815 19969 chr11 209418 209418 1 + G A CESC 209400 + 209380 209420 41 TGGAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAGCT TGGAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAACT < 41bp 1 0.0288504373925153 1 0.449622839689255 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209400 chr11:209418 synonymous SNV . 0 39 hm5C_associated_SNPs_18647 0 0 1 0 1 Ribosome 1 0.500231643795797 1 0.999536712408405 hm5C_site_19969 DeepMRMD:1;iRNA_m5C:0.999536712408405 19970 chr11 209418 209418 1 + G A CESC 209401 + 209381 209421 41 GGAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAGCTG GGAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAACTG < 41bp 1 0.185597073908371 1 0.319804698228836 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209401 chr11:209418 synonymous SNV . 0 38 hm5C_associated_SNPs_18648 0 0 1 0 1 Ribosome 1 0.500231643925947 1 0.999536712148105 hm5C_site_19970 DeepMRMD:1;iRNA_m5C:0.999536712148105 19971 chr11 209418 209418 1 + G A CESC 209402 + 209382 209422 41 GAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAGCTGC GAGCCGCTCTTCTCCCTGCCCACAGAGACTGGCGGAACTGC < 41bp 1 0.280598866100314 1 0.511492609977722 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209402 chr11:209418 synonymous SNV . 0 37 hm5C_associated_SNPs_18649 0 0 1 0 1 Ribosome 1 0.500231643541008 0.977014780044556 0.999536712917984 hm5C_site_19971 DeepMRMD:0.977014780044556;iRNA_m5C:0.999536712917984 19972 chr9 125143678 125143678 1 + C G CESC 125143665 + 125143645 125143685 41 ACCAGGGAAGAAGCAGTTGCCAGATGCCCAGCTCCTGGCCC ACCAGGGAAGAAGCAGTTGCCAGATGCCCAGCTGCTGGCCC < 41bp 1 0.655740616818209 1 0.954894006252289 experiment 0.688518766363582 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125143665 chr9:125143678 synonymous SNV . 0 34 hm5C_associated_SNPs_18650 0 0 1 0 1 nucleolus 1 0.500231646116917 0.0902119874954219 0.999536707766166 hm5C_site_19972 DeepMRMD:0.0902119874954219;iRNA_m5C:0.999536707766166 19973 chr17 57057649 57057649 1 + C G CESC 57057658 + 57057638 57057678 41 AGAACTCTTTTCAAGGAGGGCAAGAAGATGGTGGGGATGAT AGAACTCTTTTGAAGGAGGGCAAGAAGATGGTGGGGATGAT < 41bp 1 0.443757444953545 1 0.353278458118439 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1E ENSG00000175175 CDS Human protein_coding chr17:57057658 chr17:57057649 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_18651 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19973 DeepMRMD:1;iRNA_m5C:0.999536712157815 19974 chr22 31592952 31592952 1 + G C CESC 31592933 + 31592913 31592953 41 CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTCAAGGACAGA CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTCAAGGACACA < 41bp 1 0.127960573014538 1 0.106719255447388 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF185 ENSG00000138942 CDS Human protein_coding chr22:31592933 chr22:31592952 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_18652 0 0 0 0 2 Ribosome 1 0.500231643961536 1 0.999536712076929 hm5C_site_19974 DeepMRMD:1;iRNA_m5C:0.999536712076929 19975 chrX 84502592 84502592 1 + G T CESC 84502590 + 84502570 84502610 41 TTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCA TTGCTAAGTATGGATTCAGGCGTTGGAAGTCTTGGATTGCA < 41bp 1 0.310454180967563 1 0.338896006345749 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502590 chrX:84502592 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_18653 0 0 1 0 2 cytosol 1 0.500231643915718 1 0.999536712168565 hm5C_site_19975 DeepMRMD:1;iRNA_m5C:0.999536712168565 19976 chr14 105179925 105179925 1 + C T CESC 105179914 + 105179894 105179934 41 CGGGGGCAGCAAGGCAGCCTCCATGGATCCCCCAAGAGCCA CGGGGGCAGCAAGGCAGCCTCCATGGATCCCTCAAGAGCCA < 41bp 1 0.15555354413761 1 0.355823427438736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105179914 chr14:105179925 nonsynonymous SNV 0.004 1 32 hm5C_associated_SNPs_18654 0 0 1 0 1 Cytosol 1 0.500231657110049 1 0.999536685779902 hm5C_site_19976 DeepMRMD:1;iRNA_m5C:0.999536685779902 19977 chr14 105179925 105179925 1 + C T CESC 105179915 + 105179895 105179935 41 GGGGGCAGCAAGGCAGCCTCCATGGATCCCCCAAGAGCCAC GGGGGCAGCAAGGCAGCCTCCATGGATCCCTCAAGAGCCAC < 41bp 1 0.546933669546391 1 0.636946439743042 experiment 0.906132660907217 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105179915 chr14:105179925 nonsynonymous SNV 0.004 1 31 hm5C_associated_SNPs_18655 0 0 1 0 1 Cytosol 1 0.500231643921092 0.726107120513916 0.999536712157815 hm5C_site_19977 DeepMRMD:0.726107120513916;iRNA_m5C:0.999536712157815 19978 chrX 129159306 129159306 1 + G A CESC 129159311 + 129159291 129159331 41 AAATATCAGACTGGGGAGTACCTGACAGAGCAAGAAGACGA AAATATCAGACTGGGAAGTACCTGACAGAGCAAGAAGACGA < 41bp 1 0.125867014065905 1 0.1121826171875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129159311 chrX:129159306 nonsynonymous SNV 0.998 3 16 hm5C_associated_SNPs_18656 0 0 1 0 1 Cytosol 1 0.500231643921194 1 0.999536712157612 hm5C_site_19978 DeepMRMD:1;iRNA_m5C:0.999536712157612 19979 chrX 12838851 12838851 1 + G T CESC 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCTCCTTTGAGGCTGTTGTCGTCACAAACACAA < 41bp 1 0.295872348278837 1 0.0669369399547577 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838851 nonsynonymous SNV 0.991 0 11 hm5C_associated_SNPs_18657 0 0 1 0 2 Ribosome 1 0.500231643921134 1 0.999536712157731 hm5C_site_19979 DeepMRMD:1;iRNA_m5C:0.999536712157731 19980 chrX 73042704 73042704 1 + C T CESC 73042691 - 73042671 73042711 41 TAGCTGTGATATGTTCGATACTAAGGAAAAACTAAACAGAT TAGCTGTAATATGTTCGATACTAAGGAAAAACTAAACAGAT < 41bp 1 0.151193280774084 1 0.334533661603928 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042691 chrX:73042704 . . 0 8 hm5C_associated_SNPs_18658 0 0 1 0 0 unknown 1 0.500231648024564 1 0.999536703950872 hm5C_site_19980 DeepMRMD:1;iRNA_m5C:0.999536703950872 19981 chr15 28913434 28913434 1 + C T CESC 28913430 + 28913410 28913450 41 GTGCTGTTGTGACGGAGAGCCAGACGTACAAAAACCGAGCT GTGCTGTTGTGACGGAGAGCCAGATGTACAAAAACCGAGCT < 41bp 1 0.39392230962077 1 0.933065295219421 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28913430 chr15:28913434 . . 0 25 hm5C_associated_SNPs_18659 0 0 0 0 2 unknown 1 0.500232054345371 0.133869409561158 0.999535891309258 hm5C_site_19981 DeepMRMD:0.133869409561158;iRNA_m5C:0.999535891309258 19982 chr9 123917084 123917084 1 + G C CESC 123917066 + 123917046 123917086 41 TAGAAAAATCACTCAAACATCATGAAGATATTGTAGATGAA TAGAAAAATCACTCAAACATCATGAAGATATTGTAGATCAA < 41bp 1 0.350692033613759 1 0.139353215694427 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123917066 chr9:123917084 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_18661 0 0 0 0 1 chromatin 1 0.50023164394544 1 0.999536712109121 hm5C_site_19982 DeepMRMD:1;iRNA_m5C:0.999536712109121 19983 chr12 21621553 21621553 1 + G A CESC 21621565 + 21621545 21621585 41 GGACGAATGATGGGAGCTGTCTTAATTGGTGAAACCGATTT GGACGAATAATGGGAGCTGTCTTAATTGGTGAAACCGATTT < 41bp 1 0.651343775558493 1 0.357181787490845 experiment 0.697312448883014 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21621565 chr12:21621553 nonsynonymous SNV 0.990 1 9 hm5C_associated_SNPs_18662 0 0 1 0 0 Cytosol 1 0.50023164392157 1 0.999536712156859 hm5C_site_19983 DeepMRMD:1;iRNA_m5C:0.999536712156859 19984 chr12 102120186 102120186 1 + C T CESC 102120175 + 102120155 102120195 41 GACTGCATGTCATCAAGCACCTGAACAGGTTCACAAGCATA GACTGCATGTCATCAAGCACCTGAACAGGTTTACAAGCATA < 41bp 1 0.651828727393636 1 0.250088602304459 experiment 0.696342545212729 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHPT1 ENSG00000111666 CDS Human protein_coding chr12:102120175 chr12:102120186 nonsynonymous SNV 1.000 0 32 hm5C_associated_SNPs_18663 0 0 1 0 0 Ribosome 1 0.500231643954438 1 0.999536712091124 hm5C_site_19984 DeepMRMD:1;iRNA_m5C:0.999536712091124 19985 chr15 65931952 65931952 1 + G A CESC 65931959 + 65931939 65931979 41 TCCTTGCTGACCCGAGGGAGCAGCTCGACCTCTCTGCACAA TCCTTGCTGACCCAAGGGAGCAGCTCGACCTCTCTGCACAA < 41bp 1 0.432514085802226 1 0.148804396390915 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65931959 chr15:65931952 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_18664 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643656022 1 0.999536712687956 hm5C_site_19985 DeepMRMD:1;iRNA_m5C:0.999536712687956 19986 chr12 56504386 56504386 1 + C T CESC 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGAGAACCACTATTTACAAACGAGACCTCTCTAAACA < 41bp 1 0.352451384665064 1 0.409377574920654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504386 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_18665 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19986 DeepMRMD:1;iRNA_m5C:0.999536712157815 19987 chr15 64388288 64388288 1 + G C CESC 64388268 + 64388248 64388288 41 GAGACTGCCTCCGCCCTTCCCCGGCCTGGAGCCGGAGTCCG GAGACTGCCTCCGCCCTTCCCCGGCCTGGAGCCGGAGTCCC < 41bp 1 0.568442024424658 1 0.550235211849213 experiment 0.863115951150683 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64388268 chr15:64388288 nonsynonymous SNV 0.999 0 41 hm5C_associated_SNPs_18666 0 0 1 0 1 Ribosome 1 0.500231643920741 0.899529576301574 0.999536712158519 hm5C_site_19987 DeepMRMD:0.899529576301574;iRNA_m5C:0.999536712158519 19988 chr4 6925609 6925609 1 + G A CESC 6925607 + 6925587 6925627 41 CAGCGTGTCCAGTCTTGGGACAGAGCTGTCCACCACGCTGT CAGCGTGTCCAGTCTTGGGACAAAGCTGTCCACCACGCTGT < 41bp 1 0.364034689845673 1 0.123025208711624 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:6925607 chr4:6925609 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_18667 0 0 1 0 0 Cytosol 1 0.500231639825596 1 0.999536720348808 hm5C_site_19988 DeepMRMD:1;iRNA_m5C:0.999536720348808 19989 chr6 163984548 163984548 1 + C T CESC 163984557 + 163984537 163984577 41 CCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT CCTGCGTACTCTTACGCCAGCTGGCCCTACCATAATGCCTT < 41bp 1 0.362676163258051 1 0.266154527664185 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QKI ENSG00000112531 CDS Human protein_coding chr6:163984557 chr6:163984548 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_18668 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_19989 DeepMRMD:1;iRNA_m5C:0.999536712157815 19990 chr2 26410287 26410287 1 + G A CESC 26410281 + 26410261 26410301 41 TCACAGAGCCTCTGAGCGGTCGAGCCGCCTCCCTTCTGGGG TCACAGAGCCTCTGAGCGGTCGAGCCACCTCCCTTCTGGGG < 41bp 1 0.438619191624093 1 0.629522085189819 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GAREM2 ENSG00000157833 CDS Human protein_coding chr2:26410281 chr2:26410287 nonsynonymous SNV 0.007 0 27 hm5C_associated_SNPs_18669 0 0 1 0 0 Exosome 1 0.500231643921085 0.740955829620362 0.99953671215783 hm5C_site_19990 DeepMRMD:0.740955829620362;iRNA_m5C:0.99953671215783 19991 chr2 74274014 74274014 1 + C T CESC 74273996 + 74273976 74274016 41 GTGAGGCCGGCCTCCCAGCACCAAGCACCAGGCCACTCCTC GTGAGGCCGGCCTCCCAGCACCAAGCACCAGGCCACTCTTC < 41bp 1 0.227242254854758 1 0.197294622659683 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74273996 chr2:74274014 nonsynonymous SNV 0.990 0 39 hm5C_associated_SNPs_18670 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_19991 DeepMRMD:1;iRNA_m5C:0.999536712157815 19992 chr10 17271880 17271880 1 + G C CESC 17271865 + 17271845 17271885 41 GGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCG GGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGACATGCG < 41bp 1 0.0635880019780716 1 0.120599925518036 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271865 chr10:17271880 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_18671 0 0 1 0 0 Ribosome 1 0.500231641696874 1 0.999536716606253 hm5C_site_19992 DeepMRMD:1;iRNA_m5C:0.999536716606253 19993 chr9 130575577 130575577 1 + C G CESC 130575587 + 130575567 130575607 41 GCCCGGACCTCTGGAGTGCCCCCAGCCCAGAGCCCGGTGGG GCCCGGACCTGTGGAGTGCCCCCAGCCCAGAGCCCGGTGGG < 41bp 1 0.590321971499667 1 0.244942128658295 experiment 0.819356057000665 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130575587 chr9:130575577 synonymous SNV . 0 11 hm5C_associated_SNPs_18673 0 0 0 0 0 Cytosol 1 0.500231643920901 1 0.999536712158197 hm5C_site_19993 DeepMRMD:1;iRNA_m5C:0.999536712158197 19994 chr1 22333386 22333386 1 + C T CESC 22333371 + 22333351 22333391 41 GACTGTTCCCTCCTCCCCAGCAATGACATCGCCCTCATCAA GACTGTTCCCTCCTCCCCAGCAATGACATCGCCCTTATCAA < 41bp 1 0.196833213609407 1 0.0384799242019653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333371 chr1:22333386 synonymous SNV . 0 36 hm5C_associated_SNPs_18674 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643932384 1 0.999536712135231 hm5C_site_19994 DeepMRMD:1;iRNA_m5C:0.999536712135231 19995 chr1 22333386 22333386 1 + C T CESC 22333377 + 22333357 22333397 41 TCCCTCCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTC TCCCTCCTCCCCAGCAATGACATCGCCCTTATCAAGCTCTC < 41bp 1 0.296591234440329 1 0.30794095993042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333377 chr1:22333386 synonymous SNV . 0 30 hm5C_associated_SNPs_18675 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392094 1 0.99953671215812 hm5C_site_19995 DeepMRMD:1;iRNA_m5C:0.99953671215812 19996 chr1 22333386 22333386 1 + C T CESC 22333380 + 22333360 22333400 41 CTCCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACG CTCCTCCCCAGCAATGACATCGCCCTTATCAAGCTCTCACG < 41bp 1 0.364815120777003 1 0.0476687252521515 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333380 chr1:22333386 synonymous SNV . 0 27 hm5C_associated_SNPs_18676 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19996 DeepMRMD:1;iRNA_m5C:0.999536712157815 19997 chr1 22333386 22333386 1 + C T CESC 22333382 + 22333362 22333402 41 CCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCA CCTCCCCAGCAATGACATCGCCCTTATCAAGCTCTCACGCA < 41bp 1 0.178311122858818 1 0.019139289855957 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333382 chr1:22333386 synonymous SNV . 0 25 hm5C_associated_SNPs_18677 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_19997 DeepMRMD:1;iRNA_m5C:0.999536712157815 19998 chr1 22333386 22333386 1 + C T CESC 22333383 + 22333363 22333403 41 CTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAG CTCCCCAGCAATGACATCGCCCTTATCAAGCTCTCACGCAG < 41bp 1 0.144789196375656 1 0.0162779986858368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333383 chr1:22333386 synonymous SNV . 0 24 hm5C_associated_SNPs_18678 0 0 0 0 1 Endoplasmic reticulum 1 0.500231629687684 1 0.999536740624631 hm5C_site_19998 DeepMRMD:1;iRNA_m5C:0.999536740624631 19999 chr1 22333386 22333386 1 + C T CESC 22333384 + 22333364 22333404 41 TCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGC TCCCCAGCAATGACATCGCCCTTATCAAGCTCTCACGCAGC < 41bp 1 0.092873641012483 1 0.0278991460800171 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333384 chr1:22333386 synonymous SNV . 0 23 hm5C_associated_SNPs_18679 0 0 0 0 1 Endoplasmic reticulum 1 0.500231646340561 1 0.999536707318878 hm5C_site_19999 DeepMRMD:1;iRNA_m5C:0.999536707318878 20000 chr1 22333386 22333386 1 + C T CESC 22333389 + 22333369 22333409 41 AGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCA AGCAATGACATCGCCCTTATCAAGCTCTCACGCAGCGCCCA < 41bp 1 0.690484447346871 1 0.806890487670898 experiment 0.619031105306259 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333389 chr1:22333386 synonymous SNV . 0 18 hm5C_associated_SNPs_18680 0 0 0 0 1 Endoplasmic reticulum 1 0.500230261819137 0.386219024658204 0.999539476361725 hm5C_site_20000 DeepMRMD:0.386219024658204;iRNA_m5C:0.999539476361725 20001 chr1 22333386 22333386 1 + C T CESC 22333393 + 22333373 22333413 41 ATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTG ATGACATCGCCCTTATCAAGCTCTCACGCAGCGCCCAGCTG < 41bp 1 0.221154829243277 1 0.0228935182094574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333393 chr1:22333386 synonymous SNV . 0 14 hm5C_associated_SNPs_18681 0 0 0 0 1 Endoplasmic reticulum 1 0.500230916264088 1 0.999538167471824 hm5C_site_20001 DeepMRMD:1;iRNA_m5C:0.999538167471824 20002 chr1 22333386 22333386 1 + C T CESC 22333395 + 22333375 22333415 41 GACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGG GACATCGCCCTTATCAAGCTCTCACGCAGCGCCCAGCTGGG < 41bp 1 0.215729882349511 1 0.146072059869766 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333395 chr1:22333386 synonymous SNV . 0 12 hm5C_associated_SNPs_18682 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643872421 1 0.999536712255158 hm5C_site_20002 DeepMRMD:1;iRNA_m5C:0.999536712255158 20003 chr1 22333386 22333386 1 + C T CESC 22333397 + 22333377 22333417 41 CATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAG CATCGCCCTTATCAAGCTCTCACGCAGCGCCCAGCTGGGAG < 41bp 1 0.589897944978121 1 0.239843904972076 experiment 0.820204110043757 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333397 chr1:22333386 synonymous SNV . 0 10 hm5C_associated_SNPs_18683 0 0 0 0 1 Endoplasmic reticulum 1 0.500231641313036 1 0.999536717373929 hm5C_site_20003 DeepMRMD:1;iRNA_m5C:0.999536717373929 20004 chr1 22333386 22333386 1 + C T CESC 22333399 + 22333379 22333419 41 TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT TCGCCCTTATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT < 41bp 1 0.633007961222371 1 0.213215976953506 experiment 0.733984077555258 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333399 chr1:22333386 synonymous SNV . 0 8 hm5C_associated_SNPs_18684 0 0 0 0 1 Endoplasmic reticulum 1 0.500230937255817 1 0.999538125488366 hm5C_site_20004 DeepMRMD:1;iRNA_m5C:0.999538125488366 20005 chr1 22333386 22333386 1 + C T CESC 22333404 + 22333384 22333424 41 CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT CTTATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT < 41bp 1 0.308217356441503 1 0.146013498306274 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333404 chr1:22333386 synonymous SNV . 0 3 hm5C_associated_SNPs_18686 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643919019 1 0.999536712161962 hm5C_site_20005 DeepMRMD:1;iRNA_m5C:0.999536712161962 20006 chr1 22333386 22333386 1 + C T CESC 22333406 + 22333386 22333426 41 CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC TATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC < 41bp 1 0.349906935323659 1 0.0669881999492645 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333406 chr1:22333386 synonymous SNV . 0 1 hm5C_associated_SNPs_18687 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643917968 1 0.999536712164063 hm5C_site_20006 DeepMRMD:1;iRNA_m5C:0.999536712164063 20007 chr19 50169991 50169991 1 + G A CESC 50169998 + 50169978 50170018 41 GGGAAGACACGCTGAGGGTCCTAGCTGCCTTCCTTAGGCGT GGGAAGACACGCTAAGGGTCCTAGCTGCCTTCCTTAGGCGT < 41bp 1 0.361818889200155 1 0.20948988199234 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BCL2L12 ENSG00000126453 CDS Human protein_coding chr19:50169998 chr19:50169991 synonymous SNV . 0 14 hm5C_associated_SNPs_18688 0 0 1 0 2 Ribosome 1 0.500231643920286 1 0.999536712159429 hm5C_site_20007 DeepMRMD:1;iRNA_m5C:0.999536712159429 20008 chrX 154306951 154306951 1 + C T CESC 154306939 + 154306919 154306959 41 TGAGAGTTGTGGGCTGGTATCATTCCCATCCTCATATAACT TGAGAGTTGTGGGCTGGTATCATTCCCATCCTTATATAACT < 41bp 1 0.10837522903632 1 0.15511217713356 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154306939 chrX:154306951 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_18689 0 0 0 0 1 Ribosome 1 0.500231643921179 1 0.999536712157642 hm5C_site_20008 DeepMRMD:1;iRNA_m5C:0.999536712157642 20009 chr6 163984559 163984559 1 + G T CESC 163984557 + 163984537 163984577 41 CCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT CCTGCGTACTCCTACGCCAGCTTGCCCTACCATAATGCCTT < 41bp 1 0.151175376216045 1 0.0790152549743652 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QKI ENSG00000112531 CDS Human protein_coding chr6:163984557 chr6:163984559 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_18690 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20009 DeepMRMD:1;iRNA_m5C:0.999536712157815 20010 chr19 34302352 34302352 1 + G A CESC 34302343 + 34302323 34302363 41 AAGGCCCTCATCGAGGAGGTCTTCCCCGAGACCGGAGACGT AAGGCCCTCATCGAGGAGGTCTTCCCCGAAACCGGAGACGT < 41bp 1 0.101965659130106 1 0.0505620837211609 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34302343 chr19:34302352 synonymous SNV . 0 30 hm5C_associated_SNPs_18691 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20010 DeepMRMD:1;iRNA_m5C:0.999536712157815 20011 chr12 69044238 69044238 1 + C G CESC 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCCTACGATAGAAGATTGTTATAGAA < 41bp 1 0.442060447468715 1 0.266001403331757 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044238 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_18692 0 0 0 0 2 Ribosome 1 0.500231656528563 1 0.999536686942873 hm5C_site_20011 DeepMRMD:1;iRNA_m5C:0.999536686942873 20012 chr19 54606438 54606438 1 + C A CESC 54606432 + 54606412 54606452 41 ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGA ACCCCTTCAGGAGTCGGCGCCTTCCTAAAGAATGCCTGGGA < 41bp 1 0.12853303691886 1 0.110865831375122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606432 chr19:54606438 nonsynonymous SNV 0.964 0 27 hm5C_associated_SNPs_18693 0 0 1 0 2 Ribosome 1 0.500231643889846 1 0.999536712220309 hm5C_site_20012 DeepMRMD:1;iRNA_m5C:0.999536712220309 20013 chr1 39853296 39853296 1 + G C CESC 39853302 + 39853282 39853322 41 AAGCTAAGATGTCTGAGTTGCGAGTCACTCTGGATCCAGTG AAGCTAAGATGTCTCAGTTGCGAGTCACTCTGGATCCAGTG < 41bp 1 0.12791881612498 1 0.464183330535889 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39853302 chr1:39853296 nonsynonymous SNV 0.996 0 15 hm5C_associated_SNPs_18694 0 0 1 0 0 Endoplasmic reticulum 1 0.500231641110869 1 0.999536717778262 hm5C_site_20013 DeepMRMD:1;iRNA_m5C:0.999536717778262 20014 chr2 173451105 173451105 1 + G A CESC 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCGTGTTGAGACCTCCCGCACAGTGCCTCTGGT < 41bp 1 0.336725978835353 1 0.683308839797974 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451105 nonsynonymous SNV 0.037 1 28 hm5C_associated_SNPs_18695 0 0 1 0 2 Ribosome 1 0.500231643393612 0.633382320404052 0.999536713212776 hm5C_site_20014 DeepMRMD:0.633382320404052;iRNA_m5C:0.999536713212776 20015 chr17 41296946 41296946 1 + C T CESC 41296945 + 41296925 41296965 41 CACACCGCGGCCAGCAGGCACCTGGCACCCACCTTCCCTGC CACACCGCGGCCAGCAGGCACTTGGCACCCACCTTCCCTGC < 41bp 1 0.624085637556281 1 0.172705709934235 experiment 0.751828724887439 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBR2 ENSG00000198496 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:41296945 chr17:41296946 . . 0 22 hm5C_associated_SNPs_18696 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_20015 DeepMRMD:1;iRNA_m5C:0.999536712157815 20016 chr1 249212358 249212358 1 + G A CESC 249212364 + 249212344 249212384 41 GCCTGTGTGTATCTGGAGAGCAATGCTGACACAACATCTCA GCCTGTGTGTATCTAGAGAGCAATGCTGACACAACATCTCA < 41bp 1 0.437766681557766 1 0.0588943660259247 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212364 chr1:249212358 synonymous SNV . 0 15 hm5C_associated_SNPs_18697 0 0 1 0 0 Cytosol 1 0.500275751225958 1 0.999448497548084 hm5C_site_20016 DeepMRMD:1;iRNA_m5C:0.999448497548084 20017 chr8 11696000 11696000 1 + G A CESC 11695990 + 11695970 11696010 41 AGAATCTTCCCAACTGTCAGCTGATTTCCCGAAGCCACTAC AGAATCTTCCCAACTGTCAGCTGATTTCCCAAAGCCACTAC < 41bp 1 0.489075843647415 1 0.180673509836197 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11695990 chr8:11696000 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_18698 0 0 1 0 0 Cytosol 1 0.500231643920898 1 0.999536712158204 hm5C_site_20017 DeepMRMD:1;iRNA_m5C:0.999536712158204 20018 chr3 142756119 142756119 1 + C T CESC 142756138 + 142756118 142756158 41 TCGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGAT TTGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGAT < 41bp 1 0.0432010039089975 1 0.0851345658302307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142756138 chr3:142756119 synonymous SNV . 0 2 hm5C_associated_SNPs_18700 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20018 DeepMRMD:1;iRNA_m5C:0.999536712157815 20019 chr3 142756119 142756119 1 + C T CESC 142756139 + 142756119 142756159 41 CGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGATG TGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGATG < 41bp 1 0.32997454423025 1 0.29779851436615 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142756139 chr3:142756119 synonymous SNV . 0 1 hm5C_associated_SNPs_18701 0 0 1 0 2 Cytosol 1 0.500231195566158 1 0.999537608867683 hm5C_site_20019 DeepMRMD:1;iRNA_m5C:0.999537608867683 20020 chr12 72316786 72316786 1 + G A CESC 72316769 + 72316749 72316789 41 TTTTTCATATCCAGGAATTGCCACAAGCAGTCTGTGAGATC TTTTTCATATCCAGGAATTGCCACAAGCAGTCTGTGAAATC < 41bp 1 0.406975142904303 1 0.105422288179398 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72316769 chr12:72316786 synonymous SNV . 0 38 hm5C_associated_SNPs_18702 0 0 1 0 1 Cytosol 1 0.500231634297626 1 0.999536731404748 hm5C_site_20020 DeepMRMD:1;iRNA_m5C:0.999536731404748 20021 chr12 54333242 54333242 1 + G A CESC 54333251 + 54333231 54333271 41 TCCTACCAGGCGATGCCCGGCTACCTGGACGTGTCGGTGGT TCCTACCAGGCAATGCCCGGCTACCTGGACGTGTCGGTGGT < 41bp 1 0.175925126100561 1 0.218111932277679 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HOXC13 ENSG00000123364 CDS Human protein_coding chr12:54333251 chr12:54333242 synonymous SNV . 0 12 hm5C_associated_SNPs_18705 0 0 0 0 0 nucleus 1 0.50023164389733 1 0.99953671220534 hm5C_site_20021 DeepMRMD:1;iRNA_m5C:0.99953671220534 20022 chr2 39008747 39008747 1 + G A CESC 39008755 + 39008735 39008775 41 GAAACTATGAATGAAGGGGACCATAGAGTGAGGGAGAAGCT GAAACTATGAATAAAGGGGACCATAGAGTGAGGGAGAAGCT < 41bp 1 0.193001654923801 1 0.0817839801311493 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008755 chr2:39008747 nonsynonymous SNV 0.867 2 13 hm5C_associated_SNPs_18706 0 0 1 1 1 Ribosome 1 0.500231643914754 1 0.999536712170493 hm5C_site_20022 DeepMRMD:1;iRNA_m5C:0.999536712170493 20023 chr20 62648114 62648114 1 + C T CESC 62648123 + 62648103 62648143 41 AGTGTGGCCACCTGCCAGGCCGTCATGCGTGCCGTGATTGG AGTGTGGCCACTTGCCAGGCCGTCATGCGTGCCGTGATTGG < 41bp 1 0.40349809271582 1 0.0556627511978149 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62648123 chr20:62648114 synonymous SNV . 0 12 hm5C_associated_SNPs_18708 0 0 1 0 1 Cytosol 1 0.500231643987751 1 0.999536712024498 hm5C_site_20023 DeepMRMD:1;iRNA_m5C:0.999536712024498 20024 chr20 62648114 62648114 1 + C T CESC 62648130 + 62648110 62648150 41 CCACCTGCCAGGCCGTCATGCGTGCCGTGATTGGGATTGGG CCACTTGCCAGGCCGTCATGCGTGCCGTGATTGGGATTGGG < 41bp 1 0.163490772954713 1 0.0266062319278717 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62648130 chr20:62648114 synonymous SNV . 0 5 hm5C_associated_SNPs_18709 0 0 1 0 1 Cytosol 1 0.500230029849626 1 0.999539940300749 hm5C_site_20024 DeepMRMD:1;iRNA_m5C:0.999539940300749 20025 chr11 119142571 119142571 1 + G C CESC 119142558 + 119142538 119142578 41 TCGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG TCGGATTACTAAAGCAGATGCTGCGGAATTTTGCAGAAAAG < 41bp 1 0.310853207022435 1 0.372774958610535 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119142558 chr11:119142571 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_18710 0 0 1 0 1 Ribosome 1 0.50023164393022 1 0.99953671213956 hm5C_site_20025 DeepMRMD:1;iRNA_m5C:0.99953671213956 20026 chr12 95877012 95877012 1 + G A CESC 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGAAGCAACTGGAAAGAAGAAGAAAA < 41bp 1 0.463340241941279 1 0.393874019384384 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877012 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_18711 0 0 1 1 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20026 DeepMRMD:1;iRNA_m5C:0.999536712157815 20027 chr19 42729195 42729195 1 + G C CESC 42729206 + 42729186 42729226 41 GAGTTCTTGGAGCATCAGGGCACCCACTTTGACTCCCTAGA GAGTTCTTGCAGCATCAGGGCACCCACTTTGACTCCCTAGA < 41bp 1 0.108176086194711 1 0.0690456032752991 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF526 ENSG00000167625 CDS Human protein_coding chr19:42729206 chr19:42729195 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_18713 0 0 1 0 0 Cytosol 1 0.500231643920743 1 0.999536712158514 hm5C_site_20027 DeepMRMD:1;iRNA_m5C:0.999536712158514 20028 chr1 154233543 154233543 1 + G T CESC 154233546 + 154233526 154233566 41 TACTATACAGGGGTCCCGGGCCTCCCCAGCACCTTCCAGTA TACTATACAGGGGTCCCTGGCCTCCCCAGCACCTTCCAGTA < 41bp 1 0.0963333007470768 1 0.211000263690948 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154233546 chr1:154233543 synonymous SNV . 0 18 hm5C_associated_SNPs_18714 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20028 DeepMRMD:1;iRNA_m5C:0.999536712157815 20029 chr11 65062110 65062110 1 + G A CESC 65062109 + 65062089 65062129 41 CTGCTTTTCCACCTGGGGGCCGAGGAGATCAGTAGGTAAGA CTGCTTTTCCACCTGGGGGCCAAGGAGATCAGTAGGTAAGA < 41bp 1 0.482868503532976 1 0.726749062538147 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65062109 chr11:65062110 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_18715 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921151 0.546501874923706 0.999536712157698 hm5C_site_20029 DeepMRMD:0.546501874923706;iRNA_m5C:0.999536712157698 20030 chr2 170804131 170804131 1 + T G CESC 170804126 + 170804106 170804146 41 TTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGT TTAGTGTCAAACATGCGACACTTTAGAAACTATGTTAGAGT < 41bp 1 0.0741663281233972 1 0.0634437501430511 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170804126 chr2:170804131 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_18716 0 0 1 1 2 Cytosol 1 0.500231626602422 1 0.999536746795157 hm5C_site_20030 DeepMRMD:1;iRNA_m5C:0.999536746795157 20031 chr7 144060304 144060304 1 + G C CESC 144060317 + 144060297 144060337 41 CAGACCAGATATTATTCTCCCTGCGAAGAGCATCCTGCAGA CAGACCACATATTATTCTCCCTGCGAAGAGCATCCTGCAGA < 41bp 1 0.328692590519746 1 0.220063924789429 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144060317 chr7:144060304 nonsynonymous SNV 0.007 0 8 hm5C_associated_SNPs_18718 0 0 0 0 0 exosome 1 0.50023164391151 1 0.999536712176979 hm5C_site_20031 DeepMRMD:1;iRNA_m5C:0.999536712176979 20032 chrX 123195682 123195682 1 + G A CESC 123195669 + 123195649 123195689 41 GATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAAT GATTGAAATAATGCTTTGTACCATTAGACAAGCAGCTGAAT < 41bp 1 0.0704433718743701 1 0.0286092460155487 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123195669 chrX:123195682 synonymous SNV . 0 34 hm5C_associated_SNPs_18719 0 0 1 0 1 Nucleus 1 0.500233391515537 1 0.999533216968926 hm5C_site_20032 DeepMRMD:1;iRNA_m5C:0.999533216968926 20033 chrX 123195682 123195682 1 + G A CESC 123195670 + 123195650 123195690 41 ATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATG ATTGAAATAATGCTTTGTACCATTAGACAAGCAGCTGAATG < 41bp 1 0.360365803530316 1 0.0805231630802155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123195670 chrX:123195682 synonymous SNV . 0 33 hm5C_associated_SNPs_18720 0 0 1 0 1 Nucleus 1 0.500227364968308 1 0.999545270063384 hm5C_site_20033 DeepMRMD:1;iRNA_m5C:0.999545270063384 20034 chr2 198571412 198571412 1 + G A CESC 198571398 + 198571378 198571418 41 CCTTCTGAGACCTACCCAGCCTTCTGCACTACCTGCTTCCC CCTTCTGAGACCTACCCAGCCTTCTGCACTACCTACTTCCC < 41bp 1 0.219578086162979 1 0.0401414632797241 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARS2 ENSG00000247626 CDS Human protein_coding chr2:198571398 chr2:198571412 nonsynonymous SNV 0.932 0 35 hm5C_associated_SNPs_18721 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20034 DeepMRMD:1;iRNA_m5C:0.999536712157815 20035 chrX 153696531 153696531 1 + G A CESC 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCGTGCTCTTCCCAGGCATCGAGGCCCACCCG < 41bp 1 0.46309827459595 1 0.710987567901611 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696531 synonymous SNV . 0 23 hm5C_associated_SNPs_18722 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644091894 0.578024864196778 0.999536711816212 hm5C_site_20035 DeepMRMD:0.578024864196778;iRNA_m5C:0.999536711816212 20036 chrX 153696531 153696531 1 + G A CESC 153696537 + 153696517 153696557 41 CGCGTGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA CGCGTGCTCTTCCCAGGCATCGAGGCCCACCCGGTGCTCAA < 41bp 1 0.65675845270244 1 0.977012276649475 experiment 0.68648309459512 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696537 chrX:153696531 synonymous SNV . 0 15 hm5C_associated_SNPs_18723 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643919625 0.04597544670105 0.99953671216075 hm5C_site_20036 DeepMRMD:0.04597544670105;iRNA_m5C:0.99953671216075 20037 chr15 62994255 62994255 1 + G A CESC 62994253 + 62994233 62994273 41 TCACCACTATTTCTTCCAACCTGACGGAGATGTCCAAGGGT TCACCACTATTTCTTCCAACCTAACGGAGATGTCCAAGGGT < 41bp 1 0.0464007562651213 1 0.324165761470795 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:62994253 chr15:62994255 synonymous SNV . 0 23 hm5C_associated_SNPs_18724 0 0 0 0 1 Nucleus 1 0.500231643922827 1 0.999536712154345 hm5C_site_20037 DeepMRMD:1;iRNA_m5C:0.999536712154345 20038 chrX 135291510 135291510 1 + G A CESC 135291501 + 135291481 135291521 41 TCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC TCTCACCCTGTTTCCCAGCGCCAACCTCCAGGGCAGGCATC < 41bp 1 0.0735975453163849 1 0.145043253898621 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291501 chrX:135291510 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_18725 1 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_20038 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 20039 chrX 135291510 135291510 1 + G A CESC 135291502 + 135291482 135291522 41 CTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC CTCACCCTGTTTCCCAGCGCCAACCTCCAGGGCAGGCATCC < 41bp 1 0.179579859714858 1 0.0411967933177948 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291502 chrX:135291510 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_18726 1 0 1 0 1 chromatin 1 0.500231642996488 1 0.999536714007025 hm5C_site_20039 DeepMRMD:1;iRNA_m5C:0.999536714007025 not specified not specified 20040 chr3 99509748 99509748 1 + G A CESC 99509758 + 99509738 99509778 41 GCAAGGAGATGCCCCACTTGCAGTATGGCAAAGAGTATCCA GCAAGGAGATACCCCACTTGCAGTATGGCAAAGAGTATCCA < 41bp 1 0.624286398537578 1 0.250637888908386 experiment 0.751427202924843 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99509758 chr3:99509748 nonsynonymous SNV 0.997 1 11 hm5C_associated_SNPs_18727 0 0 1 0 0 Cytosol 1 0.500231661710395 1 0.99953667657921 hm5C_site_20040 DeepMRMD:1;iRNA_m5C:0.99953667657921 20041 chr7 2695739 2695739 1 + G T CESC 2695731 + 2695711 2695751 41 GTGCGTGCCCCCCAGGACCCCCTCCTCCGCGTCCAGGAGGT GTGCGTGCCCCCCAGGACCCCCTCCTCCTCGTCCAGGAGGT < 41bp 1 0.0227449883851173 1 0.0784537196159363 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695731 chr7:2695739 nonsynonymous SNV 0.931 0 29 hm5C_associated_SNPs_18728 0 0 1 0 2 Ribosome 1 0.500231643922499 1 0.999536712155002 hm5C_site_20041 DeepMRMD:1;iRNA_m5C:0.999536712155002 20042 chr7 2695739 2695739 1 + G T CESC 2695734 + 2695714 2695754 41 CGTGCCCCCCAGGACCCCCTCCTCCGCGTCCAGGAGGTGCT CGTGCCCCCCAGGACCCCCTCCTCCTCGTCCAGGAGGTGCT < 41bp 1 0.0197660654972534 1 0.136904418468475 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695734 chr7:2695739 nonsynonymous SNV 0.931 0 26 hm5C_associated_SNPs_18729 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20042 DeepMRMD:1;iRNA_m5C:0.999536712157815 20043 chrX 73044562 73044562 1 + G A CESC 73044553 - 73044533 73044573 41 GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGT GAGATCCAGACTGAAAGTCACTTAATTCAGCTTGCGAATGT < 41bp 1 0.128028097479734 1 0.0293511152267456 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044553 chrX:73044562 . . 0 12 hm5C_associated_SNPs_18730 0 0 1 2 0 unknown 1 0.500231980637345 1 0.99953603872531 hm5C_site_20043 DeepMRMD:1;iRNA_m5C:0.99953603872531 20044 chrX 73044562 73044562 1 + G A CESC 73044555 - 73044535 73044575 41 GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAAT GTGAGATCCAGACTGAAAGTCACTTAATTCAGCTTGCGAAT < 41bp 1 0.0711629641504003 1 0.0324897766113281 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044555 chrX:73044562 . . 0 14 hm5C_associated_SNPs_18731 0 0 1 2 0 unknown 1 0.500231679411121 1 0.999536641177757 hm5C_site_20044 DeepMRMD:1;iRNA_m5C:0.999536641177757 20045 chrX 73044562 73044562 1 + G A CESC 73044568 - 73044548 73044588 41 TGAAGTAATAGATGTGAGATCCAGACCGAAAGTCACTTAAT TGAAGTAATAGATGTGAGATCCAGACTGAAAGTCACTTAAT < 41bp 1 0.327787422263919 1 0.688329696655273 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044568 chrX:73044562 . . 0 27 hm5C_associated_SNPs_18732 0 0 1 2 0 unknown 1 0.500231655608408 0.623340606689454 0.999536688783184 hm5C_site_20045 DeepMRMD:0.623340606689454;iRNA_m5C:0.999536688783184 20046 chrX 135106633 135106633 1 + T C CESC 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTC < 41bp 1 0.349311933891847 1 0.676746785640717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106633 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_18733 0 0 1 0 1 Endoplasmic reticulum 1 0.50023162123395 0.646506428718566 0.999536757532099 hm5C_site_20046 DeepMRMD:0.646506428718566;iRNA_m5C:0.999536757532099 20047 chr1 28975147 28975147 1 + C T CESC 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC CTTCTGTCGTGAGTGGCACACGTAGGGTAACTCGATTGCTC < 41bp 1 0.578270863832667 1 0.222330868244171 experiment 0.843458272334665 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975147 . . 0 28 hm5C_associated_SNPs_18734 0 0 1 0 0 unknown 1 0.500207810716765 1 0.999584378566471 hm5C_site_20047 DeepMRMD:1;iRNA_m5C:0.999584378566471 20048 chr19 49132392 49132392 1 + A T CESC 49132399 + 49132379 49132419 41 AGAACCCCTGCCCATCCTGTCCCTCAACGGTGGGGGCCCAG AGAACCCCTGCCCTTCCTGTCCCTCAACGGTGGGGGCCCAG < 41bp 1 0.0680954375653788 1 0.211095750331879 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49132399 chr19:49132392 nonsynonymous SNV 0.904 1 14 hm5C_associated_SNPs_18736 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_20048 DeepMRMD:1;iRNA_m5C:0.999536712157815 20049 chr7 72396972 72396972 1 + G C CESC 72396980 + 72396960 72397000 41 AGCCCAGTGACTGTGAGGATCGCCCCTCCTGACAGAAGATT AGCCCAGTGACTCTGAGGATCGCCCCTCCTGACAGAAGATT < 41bp 1 0.116852028643248 1 0.123295694589615 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72396980 chr7:72396972 nonsynonymous SNV 0.981 2 13 hm5C_associated_SNPs_18737 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_20049 DeepMRMD:1;iRNA_m5C:0.999536712157815 20050 chrX 49031028 49031028 1 + A T CESC 49031034 + 49031014 49031054 41 CCTGCAGACCCCGCAGATGGCCCGGTGTAGGCGAACTTCCC CCTGCAGACCCCGCTGATGGCCCGGTGTAGGCGAACTTCCC < 41bp 1 0.566963147012978 1 0.269195377826691 experiment 0.866073705974044 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLP2 ENSG00000102007 CDS Human protein_coding chrX:49031034 chrX:49031028 synonymous SNV . 0 15 hm5C_associated_SNPs_18738 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20050 DeepMRMD:1;iRNA_m5C:0.999536712157815 20051 chr11 125513714 125513714 1 + G A CESC 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGT < 41bp 1 0.261962316555723 1 0.259312987327576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513714 nonsynonymous SNV 0.926 0 37 hm5C_associated_SNPs_18739 0 0 1 2 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20051 DeepMRMD:1;iRNA_m5C:0.999536712157815 20052 chr11 125513714 125513714 1 + G A CESC 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTG < 41bp 1 0.659326729908489 1 0.395488500595093 experiment 0.681346540183021 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513714 nonsynonymous SNV 0.926 0 36 hm5C_associated_SNPs_18740 0 0 1 2 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20052 DeepMRMD:1;iRNA_m5C:0.999536712157815 20053 chr11 125513714 125513714 1 + G A CESC 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTGT < 41bp 1 0.104773726080322 1 0.168052792549133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513714 nonsynonymous SNV 0.926 0 35 hm5C_associated_SNPs_18741 0 0 1 2 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20053 DeepMRMD:1;iRNA_m5C:0.999536712157815 20054 chr11 125513714 125513714 1 + G A CESC 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGATGGTGTG < 41bp 1 0.401436469656583 1 0.444914638996124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513714 nonsynonymous SNV 0.926 0 34 hm5C_associated_SNPs_18742 0 0 1 2 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20054 DeepMRMD:1;iRNA_m5C:0.999536712157815 20055 chr3 124053174 124053174 1 + C T CESC 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGGCCCCTGAGCCCTGGGAACTCTGAATCCCTCA < 41bp 1 0.615362336292554 1 0.856001377105713 experiment 0.769275327414892 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053174 synonymous SNV . 0 31 hm5C_associated_SNPs_18743 0 0 0 0 1 nucleoplasm 1 0.500231643921197 0.287997245788574 0.999536712157607 hm5C_site_20055 DeepMRMD:0.287997245788574;iRNA_m5C:0.999536712157607 20056 chr11 62655934 62655934 1 + C T CESC 62655920 + 62655900 62655940 41 CGTTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC CGTTCTCCGCTGGGCCTGGACTCTTCTCCTATATTCGCCAC < 41bp 1 0.419226790590298 1 0.224664688110352 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62655920 chr11:62655934 synonymous SNV . 0 35 hm5C_associated_SNPs_18744 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20056 DeepMRMD:1;iRNA_m5C:0.999536712157815 20057 chr7 4796655 4796655 1 + C T CESC 4796673 + 4796653 4796693 41 ACCGTTACTTTATCAAAGTCCCACGTTCCCAGGAGGAGCCT ACTGTTACTTTATCAAAGTCCCACGTTCCCAGGAGGAGCCT < 41bp 1 0.107196766464089 1 0.0534426271915436 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796673 chr7:4796655 nonsynonymous SNV 1.000 5 3 hm5C_associated_SNPs_18745 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921087 1 0.999536712157825 hm5C_site_20057 DeepMRMD:1;iRNA_m5C:0.999536712157825 20058 chr3 47046767 47046767 1 + C T CESC 47046776 + 47046756 47046796 41 TACCTCATCCGCGTGGAGCCCTTCACCTCCCTGCACGTCCA TACCTCATCCGTGTGGAGCCCTTCACCTCCCTGCACGTCCA < 41bp 1 0.217378066636128 1 0.301136195659637 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47046776 chr3:47046767 synonymous SNV . 0 12 hm5C_associated_SNPs_18746 0 0 1 0 2 Nucleus 1 0.500231643316591 1 0.999536713366819 hm5C_site_20058 DeepMRMD:1;iRNA_m5C:0.999536713366819 20059 chr20 39795150 39795150 1 + G A CESC 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCTAAGCACATGCTAATGCGCG < 41bp 1 0.230628518228716 1 0.0787512362003326 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795150 nonsynonymous SNV 0.878 5 23 hm5C_associated_SNPs_18747 0 0 0 0 2 Cytosol 1 0.500231643926113 1 0.999536712147775 hm5C_site_20059 DeepMRMD:1;iRNA_m5C:0.999536712147775 20060 chr10 116603647 116603647 1 + C T CESC 116603627 + 116603607 116603647 41 ACTGACAGACAGACTTGCCTCCCTGTACAAGGCCCTACCTC ACTGACAGACAGACTTGCCTCCCTGTACAAGGCCCTACCTT < 41bp 1 0.400361459836003 1 0.356354922056198 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM160B1 ENSG00000151553 CDS Human protein_coding chr10:116603627 chr10:116603647 stopgain 0.999 1 41 hm5C_associated_SNPs_18748 0 0 1 0 1 nucleoplasm 1 0.500231643921093 1 0.999536712157815 hm5C_site_20060 DeepMRMD:1;iRNA_m5C:0.999536712157815 20061 chr20 62521244 62521244 1 + C T CESC 62521246 + 62521226 62521266 41 GAACGGCAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG GAACGGCAGTGACAACCTTCCTTCCTCAGCGGGGAGTGGTG < 41bp 1 0.22456006147591 1 0.0657103061676025 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62521246 chr20:62521244 synonymous SNV 0.046 0 19 hm5C_associated_SNPs_18749 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_20061 DeepMRMD:1;iRNA_m5C:0.999536712157812 20062 chr19 1278930 1278930 1 + G A CESC 1278943 + 1278923 1278963 41 CCTTTTGGAACCTGCACAGCCCGCCGACCTGTTGCCACCTG CCTTTTGAAACCTGCACAGCCCGCCGACCTGTTGCCACCTG < 41bp 1 0.429718564462645 1 0.250628471374512 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C19orf24 ENSG00000228300 CDS Human protein_coding chr19:1278943 chr19:1278930 nonsynonymous SNV 0.002 0 8 hm5C_associated_SNPs_18750 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20062 DeepMRMD:1;iRNA_m5C:0.999536712157815 20063 chr19 46026015 46026015 1 + G A CESC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAAGCTAAGAGTGGTCGA < 41bp 1 0.605800628732258 1 0.403211891651154 experiment 0.788398742535484 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026015 nonsynonymous SNV 0.651 0 30 hm5C_associated_SNPs_18751 0 0 1 0 3 Ribosome 1 0.500231643921083 1 0.999536712157833 hm5C_site_20063 DeepMRMD:1;iRNA_m5C:0.999536712157833 20064 chr19 46026015 46026015 1 + G A CESC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAAGCTAAGAGTGGTCGAA < 41bp 1 0.36274536757629 1 0.2406947016716 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026015 nonsynonymous SNV 0.651 0 29 hm5C_associated_SNPs_18752 0 0 1 0 3 Ribosome 1 0.50023792563129 1 0.99952414873742 hm5C_site_20064 DeepMRMD:1;iRNA_m5C:0.99952414873742 20065 chr19 46026015 46026015 1 + G A CESC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAAGCTAAGAGTGGTCGAAG < 41bp 1 0.492089694807072 1 0.610448360443115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026015 nonsynonymous SNV 0.651 0 28 hm5C_associated_SNPs_18753 0 0 1 0 3 Ribosome 1 0.500231643920721 0.77910327911377 0.999536712158559 hm5C_site_20065 DeepMRMD:0.77910327911377;iRNA_m5C:0.999536712158559 20066 chr1 144014055 144014055 1 + C G CESC 144014050 + 144014030 144014070 41 ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC ACCTGGAGAAGCTGGCAGAACGCTTGCTGGCCAAGACATGC < 41bp 1 0.267985582815682 1 0.248406410217285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014050 chr1:144014055 . 0.780 2 26 hm5C_associated_SNPs_18754 0 0 1 0 1 unknown 1 0.500231655611465 1 0.999536688777071 hm5C_site_20066 DeepMRMD:1;iRNA_m5C:0.999536688777071 20067 chr1 144014055 144014055 1 + C G CESC 144014052 + 144014032 144014072 41 CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG CTGGAGAAGCTGGCAGAACGCTTGCTGGCCAAGACATGCAG < 41bp 1 0.389411353669805 1 0.473973959684372 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014052 chr1:144014055 . 0.780 2 24 hm5C_associated_SNPs_18755 0 0 1 0 1 unknown 1 0.500231641450119 1 0.999536717099763 hm5C_site_20067 DeepMRMD:1;iRNA_m5C:0.999536717099763 20068 chr2 177016536 177016536 1 + G C CESC 177016539 + 177016519 177016559 41 CACGGCCCGACTTCGGTGAGCAGCCTTTCGGAGGCAGCGGC CACGGCCCGACTTCGGTCAGCAGCCTTTCGGAGGCAGCGGC < 41bp 1 0.590344268252483 1 0.173893809318542 experiment 0.819311463495033 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HOXD4 ENSG00000170166 CDS Human protein_coding chr2:177016539 chr2:177016536 nonsynonymous SNV 0.997 2 18 hm5C_associated_SNPs_18756 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20068 DeepMRMD:1;iRNA_m5C:0.999536712157815 20069 chr19 45375367 45375367 1 + G A CESC 45375373 + 45375353 45375393 41 AGCATGAGAGCTTCGAGGAACCAGCCCTGATACCTGTGACC AGCATGAGAGCTTCAAGGAACCAGCCCTGATACCTGTGACC < 41bp 1 0.0636318822190811 1 0.554713845252991 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45375373 chr19:45375367 nonsynonymous SNV 0.751 0 15 hm5C_associated_SNPs_18757 0 0 1 0 1 Ribosome 1 0.500231643921121 0.890572309494018 0.999536712157759 hm5C_site_20069 DeepMRMD:0.890572309494018;iRNA_m5C:0.999536712157759 20070 chr19 45375367 45375367 1 + G A CESC 45375374 + 45375354 45375394 41 GCATGAGAGCTTCGAGGAACCAGCCCTGATACCTGTGACCC GCATGAGAGCTTCAAGGAACCAGCCCTGATACCTGTGACCC < 41bp 1 0.389442428133008 1 0.640723466873169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45375374 chr19:45375367 nonsynonymous SNV 0.751 0 14 hm5C_associated_SNPs_18758 0 0 1 0 1 Ribosome 1 0.50023162917734 0.718553066253662 0.99953674164532 hm5C_site_20070 DeepMRMD:0.718553066253662;iRNA_m5C:0.99953674164532 20071 chr8 95885647 95885647 1 + G A CESC 95885659 + 95885639 95885679 41 CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG CCAGGCAGAAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG < 41bp 1 0.548286351038588 1 0.183960735797882 experiment 0.903427297922824 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95885659 chr8:95885647 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_18760 0 0 1 0 2 Nucleus 1 0.500231929224653 1 0.999536141550695 hm5C_site_20071 DeepMRMD:1;iRNA_m5C:0.999536141550695 20072 chr20 44571761 44571761 1 + C G CESC 44571747 + 44571727 44571767 41 GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCGC GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTGAACCGC < 41bp 1 0.35689408993787 1 0.521793127059937 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571747 chr20:44571761 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_18761 0 0 1 0 1 chromatin 1 0.500231643921091 0.956413745880126 0.999536712157818 hm5C_site_20072 DeepMRMD:0.956413745880126;iRNA_m5C:0.999536712157818 20073 chr3 40553908 40553908 1 + C T CESC 40553898 + 40553878 40553918 41 TTTCTCCCTGGGCAGCATTCCCATTCACCACGCCTGTTCTG TTTCTCCCTGGGCAGCATTCCCATTCACCATGCCTGTTCTG < 41bp 1 0.0865093460418472 1 0.135357558727264 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553898 chr3:40553908 nonsynonymous SNV 0.440 1 31 hm5C_associated_SNPs_18762 0 0 0 0 2 cytosol 1 0.500231518447587 1 0.999536963104825 hm5C_site_20073 DeepMRMD:1;iRNA_m5C:0.999536963104825 20074 chr19 50335586 50335586 1 + C T CESC 50335577 + 50335557 50335597 41 TCCCGCAGACCACCCTGGGCCCTTTGTTCCGGAACTCAAGG TCCCGCAGACCACCCTGGGCCCTTTGTTCTGGAACTCAAGG < 41bp 1 0.0129100996088081 1 0.0129997432231903 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50335577 chr19:50335586 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_18764 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_20074 DeepMRMD:1;iRNA_m5C:0.999536712157815 20075 chr7 148978933 148978933 1 + C T CESC 148978930 + 148978910 148978950 41 GAGGAGGGGCGGCAGGAGGCCCCCGGCCGCTCGCCCACCAG GAGGAGGGGCGGCAGGAGGCCCCTGGCCGCTCGCCCACCAG < 41bp 1 0.279592497531315 1 0.548499763011932 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148978930 chr7:148978933 synonymous SNV . 0 24 hm5C_associated_SNPs_18765 0 0 0 0 0 chromatin 1 0.500231643921092 0.903000473976136 0.999536712157815 hm5C_site_20075 DeepMRMD:0.903000473976136;iRNA_m5C:0.999536712157815 20076 chr7 148978933 148978933 1 + C T CESC 148978931 + 148978911 148978951 41 AGGAGGGGCGGCAGGAGGCCCCCGGCCGCTCGCCCACCAGC AGGAGGGGCGGCAGGAGGCCCCTGGCCGCTCGCCCACCAGC < 41bp 1 0.295753338755627 1 0.48415008187294 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148978931 chr7:148978933 synonymous SNV . 0 23 hm5C_associated_SNPs_18766 0 0 0 0 0 chromatin 1 0.500231643169545 1 0.999536713660909 hm5C_site_20076 DeepMRMD:1;iRNA_m5C:0.999536713660909 20077 chr16 15675126 15675126 1 + G T CESC 15675136 + 15675116 15675156 41 TAATCCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTC TAATCCAGAATATCCACAAACTGGTGCAGAAGAGAGACTTC < 41bp 1 0.638448728317708 1 0.212799161672592 experiment 0.723102543364583 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15675136 chr16:15675126 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_18767 0 0 0 0 2 Cytosol 1 0.50023164392561 1 0.999536712148779 hm5C_site_20077 DeepMRMD:1;iRNA_m5C:0.999536712148779 20078 chr7 40102510 40102510 1 + G T CESC 40102521 + 40102501 40102541 41 CCAGCCATTGATGTATGGAGCTGTGGGTAAGATAGCCTTAT CCAGCCATTTATGTATGGAGCTGTGGGTAAGATAGCCTTAT < 41bp 1 0.207281433046638 1 0.372557938098907 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102521 chr7:40102510 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_18768 0 0 1 0 2 Nucleus 1 0.500231643921813 1 0.999536712156374 hm5C_site_20078 DeepMRMD:1;iRNA_m5C:0.999536712156374 20079 chr13 76415797 76415797 1 + C G CESC 76415812 + 76415792 76415832 41 TGTCTCTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAA TGTCTGTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAA < 41bp 1 0.0417250254812831 1 0.0341167151927948 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76415812 chr13:76415797 nonsynonymous SNV 0.607 0 6 hm5C_associated_SNPs_18769 0 0 1 0 1 Cytosol 1 0.500297071189075 1 0.99940585762185 hm5C_site_20079 DeepMRMD:1;iRNA_m5C:0.99940585762185 20080 chr13 76415797 76415797 1 + C G CESC 76415814 + 76415794 76415834 41 TCTCTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAAGC TCTGTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAAGC < 41bp 1 0.222319084902163 1 0.122059613466263 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76415814 chr13:76415797 nonsynonymous SNV 0.607 0 4 hm5C_associated_SNPs_18770 0 0 1 0 1 Cytosol 1 0.500511069764406 1 0.998977860471188 hm5C_site_20080 DeepMRMD:1;iRNA_m5C:0.998977860471188 20081 chr7 16737784 16737784 1 + C T CESC 16737766 + 16737746 16737786 41 AATACTGCTACGACAACATCCATTTCATGAAAGCCTTTCAG AATACTGCTACGACAACATCCATTTCATGAAAGCCTTTTAG < 41bp 1 0.0573171470476517 1 0.230653554201126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BZW2 ENSG00000136261 CDS Human protein_coding chr7:16737766 chr7:16737784 stopgain 1.000 0 39 hm5C_associated_SNPs_18771 0 0 1 0 0 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_20081 DeepMRMD:1;iRNA_m5C:0.99953671215781 20082 chr7 155534643 155534643 1 + C G CESC 155534638 + 155534618 155534658 41 ATAGAAATGAGCAGCAGCCGCTGCTCTGCCACGCCCTCAGC ATAGAAATGAGCAGCAGCCGCTGCTGTGCCACGCCCTCAGC < 41bp 1 0.555935241622286 1 0.154872715473175 experiment 0.888129516755428 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM33 ENSG00000184863 CDS Human protein_coding chr7:155534638 chr7:155534643 nonsynonymous SNV 0.018 3 26 hm5C_associated_SNPs_18772 0 0 1 0 0 Nucleus 1 0.500231643372973 1 0.999536713254055 hm5C_site_20082 DeepMRMD:1;iRNA_m5C:0.999536713254055 20083 chr2 232576627 232576627 1 + G C CESC 232576625 + 232576605 232576645 41 GGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAG GGAAAATGGGGAGCAGGAGGCTCACAATGAGGTAGACGAAG < 41bp 1 0.274461875227498 1 0.163092166185379 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576625 chr2:232576627 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_18773 0 0 1 0 3 Ribosome 1 0.500231643921058 1 0.999536712157884 hm5C_site_20083 DeepMRMD:1;iRNA_m5C:0.999536712157884 20084 chr2 232576627 232576627 1 + G C CESC 232576641 + 232576621 232576661 41 GAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG GAGGCTCACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG < 41bp 1 0.489879295201845 1 0.373368680477142 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576641 chr2:232576627 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_18774 0 0 1 0 3 Ribosome 1 0.500231643922025 1 0.99953671215595 hm5C_site_20084 DeepMRMD:1;iRNA_m5C:0.99953671215595 20085 chr7 157041173 157041173 1 + G A CESC 157041160 + 157041140 157041180 41 GTGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA GTGGACATTCACCACCTCGCCTCCCTAGACCCTAAGGTGTA < 41bp 1 0.304083163729617 1 0.410818576812744 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157041160 chr7:157041173 nonsynonymous SNV 0.035 2 34 hm5C_associated_SNPs_18775 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20085 DeepMRMD:1;iRNA_m5C:0.999536712157815 20086 chr2 241516041 241516041 1 + G C CESC 241516046 + 241516026 241516066 41 CTGACCCGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACCGC CTGACCCGGCCCGTGCAGGCCCTTTTCCAGCTGTGGACCGC < 41bp 1 0.0373050949569897 1 0.0211678147315979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516046 chr2:241516041 nonsynonymous SNV 0.766 1 16 hm5C_associated_SNPs_18776 0 0 1 0 2 chromatin 1 0.500231643923618 1 0.999536712152764 hm5C_site_20086 DeepMRMD:1;iRNA_m5C:0.999536712152764 20087 chr2 241516041 241516041 1 + G C CESC 241516052 + 241516032 241516072 41 CGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACCGCAGAACC CGGCCCGTGCAGGCCCTTTTCCAGCTGTGGACCGCAGAACC < 41bp 1 0.46015279793541 1 0.743715524673462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516052 chr2:241516041 nonsynonymous SNV 0.766 1 10 hm5C_associated_SNPs_18777 0 0 1 0 2 chromatin 1 0.500231643921092 0.512568950653076 0.999536712157815 hm5C_site_20087 DeepMRMD:0.512568950653076;iRNA_m5C:0.999536712157815 20088 chr12 27933812 27933812 1 + G C CESC 27933800 + 27933780 27933820 41 CCCCAAGCTCCAGGGGATGTCAGCCTGAAGCAGAGGCTGAG CCCCAAGCTCCAGGGGATGTCAGCCTGAAGCACAGGCTGAG < 41bp 1 0.57997398386904 1 0.450631618499756 experiment 0.84005203226192 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KLHL42 ENSG00000087448 CDS Human protein_coding chr12:27933800 chr12:27933812 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_18778 0 0 1 0 0 Ribosome 1 0.500231643973118 1 0.999536712053764 hm5C_site_20088 DeepMRMD:1;iRNA_m5C:0.999536712053764 20089 chr3 50614558 50614558 1 + C G CESC 50614550 + 50614530 50614570 41 TGTGGGATCCCCAGGCAGCCCCCTCATTCTGGAGGTGGGCT TGTGGGATCCCCAGGCAGCCCCCTCATTGTGGAGGTGGGCT < 41bp 1 0.0484148754270731 1 0.166217029094696 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614550 chr3:50614558 nonsynonymous SNV 0.991 4 29 hm5C_associated_SNPs_18779 0 0 0 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_20089 DeepMRMD:1;iRNA_m5C:0.999536712157815 20090 chr12 132445647 132445647 1 + C T CESC 132445627 + 132445607 132445647 41 AGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTC AGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTT < 41bp 1 0.159713755699912 1 0.093330442905426 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132445627 chr12:132445647 synonymous SNV . 0 41 hm5C_associated_SNPs_18781 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_20090 DeepMRMD:1;iRNA_m5C:0.999536712157814 20091 chr12 132445647 132445647 1 + C T CESC 132445628 + 132445608 132445648 41 GAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCT GAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTTT < 41bp 1 0.3309109599378 1 0.290323495864868 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132445628 chr12:132445647 synonymous SNV . 0 40 hm5C_associated_SNPs_18782 0 0 0 0 0 Cytosol 1 0.500231643933524 1 0.999536712132952 hm5C_site_20091 DeepMRMD:1;iRNA_m5C:0.999536712132952 20092 chr12 132445647 132445647 1 + C T CESC 132445632 + 132445612 132445652 41 GTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAG GTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTTTGCAG < 41bp 1 0.14468730596341 1 0.214941769838333 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132445632 chr12:132445647 synonymous SNV . 0 36 hm5C_associated_SNPs_18783 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20092 DeepMRMD:1;iRNA_m5C:0.999536712157815 20093 chr12 132445647 132445647 1 + C T CESC 132445633 + 132445613 132445653 41 TGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGC TGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTTTGCAGC < 41bp 1 0.210867600672099 1 0.689122140407562 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132445633 chr12:132445647 synonymous SNV . 0 35 hm5C_associated_SNPs_18784 0 0 0 0 0 Cytosol 1 0.500231643922953 0.621755719184876 0.999536712154094 hm5C_site_20093 DeepMRMD:0.621755719184876;iRNA_m5C:0.999536712154094 20094 chr12 132445647 132445647 1 + C T CESC 132445639 + 132445619 132445659 41 CAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGCAGCAGC CAGGTGCCCCTGGCCCTGGGCTGGGCCTTTGCAGCAGCAGC < 41bp 1 0.397842191650162 1 0.471597820520401 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132445639 chr12:132445647 synonymous SNV . 0 29 hm5C_associated_SNPs_18785 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20094 DeepMRMD:1;iRNA_m5C:0.999536712157815 20095 chr17 61498543 61498543 1 + G C CESC 61498535 + 61498515 61498555 41 CTATTACCCAGTCTGTCACTCAAAACTAGATCTGGAGCGCT CTATTACCCAGTCTGTCACTCAAAACTACATCTGGAGCGCT < 41bp 1 0.172257920380069 1 0.855350375175476 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61498535 chr17:61498543 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_18786 0 0 0 0 0 Cytosol 1 0.500231643917481 0.289299249649048 0.999536712165037 hm5C_site_20095 DeepMRMD:0.289299249649048;iRNA_m5C:0.999536712165037 20096 chr16 29993184 29993184 1 + G C CESC 29993182 + 29993162 29993202 41 CCCTCCTGTGACTTTCAGGTCTGAGTACTTCCGGAATTTTG CCCTCCTGTGACTTTCAGGTCTCAGTACTTCCGGAATTTTG < 41bp 1 0.274699289904619 1 0.134513914585114 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29993182 chr16:29993184 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_18787 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_20096 DeepMRMD:1;iRNA_m5C:0.999536712157814 20097 chr6 25551207 25551207 1 + C T CESC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT TGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT < 41bp 1 0.450666234532163 1 0.409624516963959 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551207 stopgain 0.990 1 1 hm5C_associated_SNPs_18788 0 0 0 0 1 unknown 1 0.500231651657244 1 0.999536696685512 hm5C_site_20097 DeepMRMD:1;iRNA_m5C:0.999536696685512 20098 chr16 67572590 67572590 1 + C T CESC 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG < 41bp 1 0.0851063116262902 1 0.197455257177353 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572590 synonymous SNV . 0 8 hm5C_associated_SNPs_18790 0 0 0 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_20098 DeepMRMD:1;iRNA_m5C:0.999536712157815 20099 chr16 67572590 67572590 1 + C T CESC 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC < 41bp 1 0.517940255258228 1 0.516025364398956 experiment 0.964119489483544 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572590 synonymous SNV . 0 7 hm5C_associated_SNPs_18791 0 0 0 0 2 unknown 1 0.500231643921093 0.967949271202088 0.999536712157815 hm5C_site_20099 DeepMRMD:0.967949271202088;iRNA_m5C:0.999536712157815 20100 chr16 67572590 67572590 1 + C T CESC 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT < 41bp 1 0.157043024838419 1 0.358241617679596 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572590 synonymous SNV . 0 6 hm5C_associated_SNPs_18792 0 0 0 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_20100 DeepMRMD:1;iRNA_m5C:0.999536712157815 20101 chr16 67572590 67572590 1 + C T CESC 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTTAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC < 41bp 1 0.469222041382753 1 0.4205062687397 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572590 synonymous SNV . 0 5 hm5C_associated_SNPs_18793 0 0 0 0 2 unknown 1 0.50023164392203 1 0.999536712155941 hm5C_site_20101 DeepMRMD:1;iRNA_m5C:0.999536712155941 20102 chr11 8934037 8934037 1 + G C CESC 8934032 + 8934012 8934052 41 CCCCCAACCCTTAGTGCTTCCTTCAGAACAATGGCTGAATT CCCCCAACCCTTAGTGCTTCCTTCACAACAATGGCTGAATT < 41bp 1 0.411129454104965 1 0.380454123020172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKIP1 ENSG00000166452 CDS Human protein_coding chr11:8934032 chr11:8934037 nonsynonymous SNV 0.995 2 26 hm5C_associated_SNPs_18796 0 0 1 0 2 Ribosome 1 0.500231620484115 1 0.999536759031771 hm5C_site_20102 DeepMRMD:1;iRNA_m5C:0.999536759031771 20103 chr2 173451093 173451093 1 + G C CESC 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCGTGTTCAGACCTCCCGCGCAGTGCCTCTGGT < 41bp 1 0.338453965739047 1 0.521596968173981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451093 nonsynonymous SNV 0.989 1 16 hm5C_associated_SNPs_18797 0 0 1 0 2 Ribosome 1 0.500231643025967 0.956806063652038 0.999536713948066 hm5C_site_20103 DeepMRMD:0.956806063652038;iRNA_m5C:0.999536713948066 20104 chr8 22064467 22064467 1 + C A CESC 22064464 + 22064444 22064484 41 AAGGAGTGCACGTGGGCCATCTCCAGCACCCCCGGGCACCG AAGGAGTGCACGTGGGCCATCTCAAGCACCCCCGGGCACCG < 41bp 1 0.651132228971376 1 0.438963085412979 experiment 0.697735542057248 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064464 chr8:22064467 synonymous SNV . 0 24 hm5C_associated_SNPs_18798 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643768811 1 0.999536712462379 hm5C_site_20104 DeepMRMD:1;iRNA_m5C:0.999536712462379 20105 chr21 45483604 45483604 1 + G T CESC 45483598 + 45483578 45483618 41 TGCTGCTCTTCCTGCAGAGGCCGTGGGAGGTGGCCCAGCGC TGCTGCTCTTCCTGCAGAGGCCGTGGTAGGTGGCCCAGCGC < 41bp 1 0.395432548722284 1 0.473667979240417 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45483598 chr21:45483604 stopgain 1.000 1 27 hm5C_associated_SNPs_18799 0 0 1 0 1 Cytosol 1 0.500231643930462 1 0.999536712139076 hm5C_site_20105 DeepMRMD:1;iRNA_m5C:0.999536712139076 20106 chrX 68059873 68059873 1 + G A CESC 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTCAAAATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.171004497084437 1 0.0597743093967438 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059873 synonymous SNV . 0 6 hm5C_associated_SNPs_18800 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_20106 DeepMRMD:1;iRNA_m5C:0.999536712157814 20107 chr3 169985710 169985710 1 + C G CESC 169985728 + 169985708 169985748 41 ATCTACCGTAGAGGTGCACGCCGCTGGAGAAAGCTTTATTG ATGTACCGTAGAGGTGCACGCCGCTGGAGAAAGCTTTATTG < 41bp 1 0.432656000437124 1 0.351053059101105 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169985728 chr3:169985710 nonsynonymous SNV 0.989 2 3 hm5C_associated_SNPs_18801 0 0 1 0 1 Ribosome 1 0.500231643933034 1 0.999536712133932 hm5C_site_20107 DeepMRMD:1;iRNA_m5C:0.999536712133932 20108 chr19 55899664 55899664 1 + G A CESC 55899674 + 55899654 55899694 41 CTGTGATGGTGAAGAGGAAGCGGACCCGCCCCACCAAGAGC CTGTGATGGTAAAGAGGAAGCGGACCCGCCCCACCAAGAGC < 41bp 1 0.606906821361098 1 0.44150173664093 experiment 0.786186357277805 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899674 chr19:55899664 synonymous SNV . 0 11 hm5C_associated_SNPs_18803 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20108 DeepMRMD:1;iRNA_m5C:0.999536712157815 20109 chr10 75529389 75529389 1 + G T CESC 75529387 + 75529367 75529407 41 ATCCAGCATATCGGGGAGTCCTGAATAGCCCTGTGAAGGCT ATCCAGCATATCGGGGAGTCCTTAATAGCCCTGTGAAGGCT < 41bp 1 0.462932397462649 1 0.747394204139709 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529387 chr10:75529389 synonymous SNV . 0 23 hm5C_associated_SNPs_18804 0 0 1 0 1 Nucleus 1 0.500231643921092 0.505211591720582 0.999536712157815 hm5C_site_20109 DeepMRMD:0.505211591720582;iRNA_m5C:0.999536712157815 20110 chr1 24022845 24022845 1 + C T CESC 24022848 + 24022828 24022868 41 TTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAATTCC TTTCAGTATGATGGGATTATCCTTCCTGGCAAATAAATTCC < 41bp 1 0.0484657483222136 1 0.0435154736042023 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022848 chr1:24022845 synonymous SNV . 0 18 hm5C_associated_SNPs_18805 0 0 1 0 1 Cytosol 1 0.500231643920901 1 0.999536712158199 hm5C_site_20110 DeepMRMD:1;iRNA_m5C:0.999536712158199 20111 chr1 6681563 6681563 1 + C T CESC 6681570 + 6681550 6681590 41 CCACACCTGGATTCACCTGTCCTGTGCGAAAATCCGGAAAT CCACACCTGGATTTACCTGTCCTGTGCGAAAATCCGGAAAT < 41bp 1 0.184671383509192 1 0.11658051609993 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681570 chr1:6681563 nonsynonymous SNV 1.000 5 14 hm5C_associated_SNPs_18806 0 0 1 0 1 cytosol 1 0.500231638112314 1 0.999536723775373 hm5C_site_20111 DeepMRMD:1;iRNA_m5C:0.999536723775373 20112 chrX 73046913 73046913 1 + C G CESC 73046893 - 73046873 73046913 41 GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC CATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC < 41bp 1 0.178396795618392 1 0.404325097799301 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046893 chrX:73046913 . . 0 1 hm5C_associated_SNPs_18807 0 0 1 3 0 unknown 1 0.500231771434683 1 0.999536457130633 hm5C_site_20112 DeepMRMD:1;iRNA_m5C:0.999536457130633 20113 chrX 73046913 73046913 1 + C G CESC 73046894 - 73046874 73046914 41 AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG ACATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG < 41bp 1 0.433083711487988 1 0.139819502830505 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046894 chrX:73046913 . . 0 2 hm5C_associated_SNPs_18808 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_20113 DeepMRMD:1;iRNA_m5C:0.999536712157816 20114 chrX 73046913 73046913 1 + C G CESC 73046915 - 73046895 73046935 41 AGAAGGCCCAAAGTATAAGACAGATGGTTTGAGACTTGAGA AGAAGGCCCAAAGTATAAGACACATGGTTTGAGACTTGAGA < 41bp 1 0.128056206943049 1 0.118196040391922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046915 chrX:73046913 . . 0 23 hm5C_associated_SNPs_18809 0 0 1 3 0 unknown 1 0.500231643921685 1 0.99953671215663 hm5C_site_20114 DeepMRMD:1;iRNA_m5C:0.99953671215663 20115 chrX 48399807 48399807 1 + C T CESC 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTTATCCGAGCCTTTGATTTGAGTGG < 41bp 1 0.496898680590144 1 0.383635818958282 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399807 synonymous SNV . 0 18 hm5C_associated_SNPs_18810 0 0 0 0 3 nucleolus 1 0.500231643934065 1 0.99953671213187 hm5C_site_20115 DeepMRMD:1;iRNA_m5C:0.99953671213187 20116 chr17 57754406 57754406 1 + G C CESC 57754417 + 57754397 57754437 41 ATCTACATAGACAGTAATAACAACCCGGAGAGATTTCTTCG ATCTACATACACAGTAATAACAACCCGGAGAGATTTCTTCG < 41bp 1 0.237732669866332 1 0.129548519849777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57754417 chr17:57754406 nonsynonymous SNV 0.999 4 10 hm5C_associated_SNPs_18811 0 0 1 0 1 Nucleus 1 0.500231643869668 1 0.999536712260663 hm5C_site_20116 DeepMRMD:1;iRNA_m5C:0.999536712260663 20117 chr19 4793205 4793205 1 + C G CESC 4793215 + 4793195 4793235 41 CTACGTGCTTCAGGACCGGGCCGCCAAAGGCAGCCTGGGCA CTACGTGCTTGAGGACCGGGCCGCCAAAGGCAGCCTGGGCA < 41bp 1 0.103349498164297 1 0.0882076621055603 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FEM1A ENSG00000141965 CDS Human protein_coding chr19:4793215 chr19:4793205 nonsynonymous SNV 0.990 0 11 hm5C_associated_SNPs_18812 0 0 1 0 0 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_20117 DeepMRMD:1;iRNA_m5C:0.999536712157812 20118 chr17 7810527 7810527 1 + G C CESC 7810511 + 7810491 7810531 41 GAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGCCAGAGAA GAGAAGGAGGAAGCTGAAAACCAGGAGGAAAAGCCACAGAA < 41bp 1 0.532115492228741 1 0.6708664894104 experiment 0.935769015542519 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810511 chr17:7810527 nonsynonymous SNV 0.996 3 37 hm5C_associated_SNPs_18813 0 0 1 0 2 Cytosol 1 0.50018412167135 0.6582670211792 0.9996317566573 hm5C_site_20118 DeepMRMD:0.6582670211792;iRNA_m5C:0.9996317566573 20119 chr17 7810527 7810527 1 + G C CESC 7810524 + 7810504 7810544 41 CTGAAAACCAGGAGGAAAAGCCAGAGAAGAACAGCAGAATT CTGAAAACCAGGAGGAAAAGCCACAGAAGAACAGCAGAATT < 41bp 1 0.33267358072032 1 0.414039313793182 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810524 chr17:7810527 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_18814 0 0 1 0 2 Cytosol 1 0.500229378064854 1 0.999541243870292 hm5C_site_20119 DeepMRMD:1;iRNA_m5C:0.999541243870292 20120 chr17 7810527 7810527 1 + G C CESC 7810525 + 7810505 7810545 41 TGAAAACCAGGAGGAAAAGCCAGAGAAGAACAGCAGAATTG TGAAAACCAGGAGGAAAAGCCACAGAAGAACAGCAGAATTG < 41bp 1 0.371307249744797 1 0.315534114837646 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810525 chr17:7810527 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_18815 0 0 1 0 2 Cytosol 1 0.500231643909904 1 0.999536712180191 hm5C_site_20120 DeepMRMD:1;iRNA_m5C:0.999536712180191 20121 chr4 2965765 2965765 1 + C G CESC 2965776 + 2965756 2965796 41 CCTCGGTCTCGCAGAATCCGCCGGCGGCGGCGGCGCCAGGA CCTCGGTCTGGCAGAATCCGCCGGCGGCGGCGGCGCCAGGA < 41bp 1 0.695548291111018 1 0.825613439083099 experiment 0.608903417777964 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRK4 ENSG00000125388 CDS Human protein_coding chr4:2965776 chr4:2965765 nonsynonymous SNV . 0 10 hm5C_associated_SNPs_18816 0 0 1 0 1 Cytosol 1 0.500231643899922 0.348773121833802 0.999536712200156 hm5C_site_20121 DeepMRMD:0.348773121833802;iRNA_m5C:0.999536712200156 20122 chr11 65733421 65733421 1 + G A CESC 65733404 + 65733384 65733424 41 GGGCCTCACCGTGGAGCATGCCATTGATTCCTTCCGAGAAG GGGCCTCACCGTGGAGCATGCCATTGATTCCTTCCGAAAAG < 41bp 1 0.0775907954700059 1 0.101965039968491 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SART1 ENSG00000175467 CDS Human protein_coding chr11:65733404 chr11:65733421 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_18817 0 0 1 0 2 Cytosol 1 0.500231643921098 1 0.999536712157804 hm5C_site_20122 DeepMRMD:1;iRNA_m5C:0.999536712157804 20123 chrX 105855822 105855822 1 + G T CESC 105855825 + 105855805 105855845 41 AACTCCCTTCAGAAATAGAGCGCACCAGGAGAAACCAGAGA AACTCCCTTCAGAAATATAGCGCACCAGGAGAAACCAGAGA < 41bp 1 0.316968620573167 1 0.133949130773544 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105855825 chrX:105855822 nonsynonymous SNV 0.992 1 18 hm5C_associated_SNPs_18818 0 0 1 0 0 nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_20123 DeepMRMD:1;iRNA_m5C:0.999536712157815 20124 chr6 43153911 43153911 1 + C T CESC 43153923 + 43153903 43153943 41 CGGAACCTCAGCGAACAGGGCATGTCACCTCCCCGGCCAAC CGGAACCTTAGCGAACAGGGCATGTCACCTCCCCGGCCAAC < 41bp 1 0.162069419884108 1 0.16309529542923 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43153923 chr6:43153911 synonymous SNV . 0 9 hm5C_associated_SNPs_18820 0 0 1 0 0 chromatin 1 0.499815375809019 1 1 hm5C_site_20124 DeepMRMD:1;iRNA_m5C:1 20125 chr17 43247063 43247063 1 + G C CESC 43247045 + 43247025 43247065 41 TGCAGGCGTGCACCGGCCAGCAGTCCTGCCGCCAGGTGGAG TGCAGGCGTGCACCGGCCAGCAGTCCTGCCGCCAGGTGCAG < 41bp 1 0.302155374779297 1 0.209195822477341 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEXIM2 ENSG00000168517 CDS Human protein_coding chr17:43247045 chr17:43247063 nonsynonymous SNV 0.994 0 39 hm5C_associated_SNPs_18821 0 0 0 0 0 chromatin 1 0.500231643302734 1 0.999536713394532 hm5C_site_20125 DeepMRMD:1;iRNA_m5C:0.999536713394532 20126 chr6 142519611 142519611 1 + C T CESC 142519603 + 142519583 142519623 41 AGAAAATGAAGATGCTGGAGCAGCCTCTCTGCCCACTCAGC AGAAAATGAAGATGCTGGAGCAGCCTCTTTGCCCACTCAGC < 41bp 1 0.307723065082631 1 0.215969890356064 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519603 chr6:142519611 synonymous SNV . 0 29 hm5C_associated_SNPs_18823 0 0 1 1 1 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_20126 DeepMRMD:1;iRNA_m5C:0.999536712157817 20127 chr2 74425838 74425838 1 + C G CESC 74425852 + 74425832 74425872 41 TCCCTTCGCCTTCGCCCTTTCCACCTCGCGGCAGTTCGGTA TCCCTTGGCCTTCGCCCTTTCCACCTCGCGGCAGTTCGGTA < 41bp 1 0.267900429788931 1 0.153401911258698 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74425852 chr2:74425838 nonsynonymous SNV 0.002 0 7 hm5C_associated_SNPs_18824 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20127 DeepMRMD:1;iRNA_m5C:0.999536712157815 20128 chr19 48833688 48833688 1 + C T CESC 48833670 + 48833650 48833690 41 TTCGCCCTGGCCTGGGTGGCCTTCCCCCTCGCCCTGGTCAG TTCGCCCTGGCCTGGGTGGCCTTCCCCCTCGCCCTGGTTAG < 41bp 1 0.306120147336297 1 0.030019998550415 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48833670 chr19:48833688 stopgain 0.998 0 39 hm5C_associated_SNPs_18825 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20128 DeepMRMD:1;iRNA_m5C:0.999536712157815 20129 chr19 48833688 48833688 1 + C T CESC 48833674 + 48833654 48833694 41 CCCTGGCCTGGGTGGCCTTCCCCCTCGCCCTGGTCAGCGGC CCCTGGCCTGGGTGGCCTTCCCCCTCGCCCTGGTTAGCGGC < 41bp 1 0.49476107955088 1 0.190249770879745 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48833674 chr19:48833688 stopgain 0.998 0 35 hm5C_associated_SNPs_18826 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20129 DeepMRMD:1;iRNA_m5C:0.999536712157815 20130 chr9 136216849 136216849 1 + G A CESC 136216840 + 136216820 136216860 41 AAGAAGCAGAGACTGTTGGCCCGGGCCGAGAAGAAGGCTGC AAGAAGCAGAGACTGTTGGCCCGGGCCGAAAAGAAGGCTGC < 41bp 1 0.511423743820907 1 0.658650040626526 experiment 0.977152512358186 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216840 chr9:136216849 synonymous SNV . 0 30 hm5C_associated_SNPs_18829 0 0 1 0 2 Cytosol 1 0.500231532916388 0.682699918746948 0.999536934167224 hm5C_site_20130 DeepMRMD:0.682699918746948;iRNA_m5C:0.999536934167224 20131 chr9 136216849 136216849 1 + G A CESC 136216845 + 136216825 136216865 41 GCAGAGACTGTTGGCCCGGGCCGAGAAGAAGGCTGCTGGCA GCAGAGACTGTTGGCCCGGGCCGAAAAGAAGGCTGCTGGCA < 41bp 1 0.543465306837874 1 0.346510112285614 experiment 0.913069386324251 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216845 chr9:136216849 synonymous SNV . 0 25 hm5C_associated_SNPs_18830 0 0 1 0 2 Cytosol 1 0.500231643898288 1 0.999536712203424 hm5C_site_20131 DeepMRMD:1;iRNA_m5C:0.999536712203424 20132 chr9 136216849 136216849 1 + G A CESC 136216857 + 136216837 136216877 41 GGCCCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGTCC GGCCCGGGCCGAAAAGAAGGCTGCTGGCAAAGGGGACGTCC < 41bp 1 0.696106341002876 1 0.132033318281174 experiment 0.607787317994247 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216857 chr9:136216849 synonymous SNV . 0 13 hm5C_associated_SNPs_18831 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20132 DeepMRMD:1;iRNA_m5C:0.999536712157815 20133 chr9 136216849 136216849 1 + G A CESC 136216860 + 136216840 136216880 41 CCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGTCCCAA CCGGGCCGAAAAGAAGGCTGCTGGCAAAGGGGACGTCCCAA < 41bp 1 0.5720770802378 1 0.213141143321991 experiment 0.855845839524399 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216860 chr9:136216849 synonymous SNV . 0 10 hm5C_associated_SNPs_18832 0 0 1 0 2 Cytosol 1 0.500231643921009 1 0.999536712157981 hm5C_site_20133 DeepMRMD:1;iRNA_m5C:0.999536712157981 20134 chr10 102685753 102685753 1 + G A CESC 102685745 + 102685725 102685765 41 CTTACACAAATACCTTAGAACGTCTAGTGAAGGAAATGGAA CTTACACAAATACCTTAGAACGTCTAGTAAAGGAAATGGAA < 41bp 1 0.0650650146700385 1 0.0724941492080688 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102685745 chr10:102685753 synonymous SNV . 0 29 hm5C_associated_SNPs_18833 0 0 1 0 2 Nucleus 1 0.500231643905506 1 0.999536712188988 hm5C_site_20134 DeepMRMD:1;iRNA_m5C:0.999536712188988 20135 chr11 67049187 67049187 1 + G C CESC 67049189 + 67049169 67049209 41 AAGCTCAGCTTCATCCTGGACCTCATGAACGGTGAGTGCTG AAGCTCAGCTTCATCCTGCACCTCATGAACGGTGAGTGCTG < 41bp 1 0.169812089260696 1 0.0145429372787476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67049189 chr11:67049187 nonsynonymous SNV 0.986 4 19 hm5C_associated_SNPs_18834 0 0 1 0 2 chromatin 1 0.500231649822616 1 0.999536700354767 hm5C_site_20135 DeepMRMD:1;iRNA_m5C:0.999536700354767 20136 chr5 112868672 112868672 1 + G A CESC 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTGTGGCTAAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.505045783865088 1 0.0926721394062042 experiment 0.989908432269824 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868672 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_18836 0 0 1 0 2 Cytosol 1 0.500231653314808 1 0.999536693370384 hm5C_site_20136 DeepMRMD:1;iRNA_m5C:0.999536693370384 20137 chr5 112868672 112868672 1 + G A CESC 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTGTGGCTAAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.572305840408575 1 0.634931802749634 experiment 0.85538831918285 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868672 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_18837 0 0 1 0 2 Cytosol 1 0.500231644068879 0.730136394500732 0.999536711862241 hm5C_site_20137 DeepMRMD:0.730136394500732;iRNA_m5C:0.999536711862241 20138 chrX 100880767 100880767 1 + C G CESC 100880750 + 100880730 100880770 41 CGGGAAATGAAGAAACCAAACTTCAGGTTCTGAAACTCCTT CGGGAAATGAAGAAACCAAACTTCAGGTTCTGAAACTGCTT < 41bp 1 0.567698216594038 1 0.302956610918045 experiment 0.864603566811923 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880750 chrX:100880767 synonymous SNV . 0 38 hm5C_associated_SNPs_18838 0 0 1 0 0 Endoplasmic reticulum 1 0.500231631028857 1 0.999536737942285 hm5C_site_20138 DeepMRMD:1;iRNA_m5C:0.999536737942285 20139 chrX 100880767 100880767 1 + C G CESC 100880753 + 100880733 100880773 41 GAAATGAAGAAACCAAACTTCAGGTTCTGAAACTCCTTTTG GAAATGAAGAAACCAAACTTCAGGTTCTGAAACTGCTTTTG < 41bp 1 0.669209411190512 1 0.447276473045349 experiment 0.661581177618976 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880753 chrX:100880767 synonymous SNV . 0 35 hm5C_associated_SNPs_18839 0 0 1 0 0 Endoplasmic reticulum 1 0.5002316439203 1 0.999536712159401 hm5C_site_20139 DeepMRMD:1;iRNA_m5C:0.999536712159401 20140 chrX 100880767 100880767 1 + C G CESC 100880765 + 100880745 100880785 41 CCAAACTTCAGGTTCTGAAACTCCTTTTGAATTTGGCTGAA CCAAACTTCAGGTTCTGAAACTGCTTTTGAATTTGGCTGAA < 41bp 1 0.603457076919039 1 0.141265511512756 experiment 0.793085846161922 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880765 chrX:100880767 synonymous SNV . 0 23 hm5C_associated_SNPs_18840 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643912666 1 0.999536712174668 hm5C_site_20140 DeepMRMD:1;iRNA_m5C:0.999536712174668 20141 chrX 100880767 100880767 1 + C G CESC 100880781 + 100880761 100880801 41 GAAACTCCTTTTGAATTTGGCTGAAAATCCAGCCATGACTA GAAACTGCTTTTGAATTTGGCTGAAAATCCAGCCATGACTA < 41bp 1 0.696659368578117 1 0.348172903060913 experiment 0.606681262843766 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880781 chrX:100880767 synonymous SNV . 0 7 hm5C_associated_SNPs_18841 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643922447 1 0.999536712155106 hm5C_site_20141 DeepMRMD:1;iRNA_m5C:0.999536712155106 20142 chr22 29695785 29695785 1 + G C CESC 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGGCCCCCTGGACCTTTCATGGAACAGATGGGAG < 41bp 1 0.197344992923853 1 0.201024532318115 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695785 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_18842 0 0 1 0 1 Cytosol 1 0.500233153128861 1 0.999533693742277 hm5C_site_20142 DeepMRMD:1;iRNA_m5C:0.999533693742277 20143 chrX 129173217 129173217 1 + G A CESC 129173210 + 129173190 129173230 41 GGCTACCTACTCGGGTCAGACAGCCATGAAGCTGGCCAGCA GGCTACCTACTCGGGTCAGACAGCCATAAAGCTGGCCAGCA < 41bp 1 0.360601047595861 1 0.722644507884979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129173210 chrX:129173217 nonsynonymous SNV 0.995 1 28 hm5C_associated_SNPs_18843 0 0 0 0 1 Cytosol 1 0.500231643921079 0.554710984230042 0.999536712157843 hm5C_site_20143 DeepMRMD:0.554710984230042;iRNA_m5C:0.999536712157843 20144 chr1 44878382 44878382 1 + C G CESC 44878373 + 44878353 44878393 41 ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA ATCGGGAAGCCTCATCTAGCCCAGAGGATGGGAATGACAGA < 41bp 1 0.454295949726071 1 0.295323401689529 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878373 chr1:44878382 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_18844 0 0 1 0 1 Ribosome 1 0.500231643921098 1 0.999536712157804 hm5C_site_20144 DeepMRMD:1;iRNA_m5C:0.999536712157804 20145 chr17 38318312 38318312 1 + G A CESC 38318298 + 38318278 38318318 41 CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATAATGATG < 41bp 1 0.185158863569658 1 0.0587791800498962 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318298 chr17:38318312 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_18845 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20145 DeepMRMD:1;iRNA_m5C:0.999536712157815 20146 chr17 38318312 38318312 1 + G A CESC 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGATAATGATGAAGAT < 41bp 1 0.138879640809041 1 0.11624750494957 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318312 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_18846 0 0 1 0 2 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_20146 DeepMRMD:1;iRNA_m5C:0.999536712157818 20147 chr2 242695372 242695372 1 + G A CESC 242695362 + 242695342 242695382 41 CCTGTGGAGCGGCTCTACGACATCGTGACTGACCTGCGCGC CCTGTGGAGCGGCTCTACGACATCGTGACTAACCTGCGCGC < 41bp 1 0.578431961300662 1 0.210908502340317 experiment 0.843136077398676 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242695362 chr2:242695372 nonsynonymous SNV 0.002 2 31 hm5C_associated_SNPs_18847 0 0 1 0 0 Ribosome 1 0.500231645364017 1 0.999536709271966 hm5C_site_20147 DeepMRMD:1;iRNA_m5C:0.999536709271966 20148 chr17 33324841 33324841 1 + C T CESC 33324843 + 33324823 33324863 41 CTCAGAAATGAAGCGAGTCACAGTAAGTGAAGACCCTATGC CTCAGAAATGAAGCGAGTTACAGTAAGTGAAGACCCTATGC < 41bp 1 0.651576345263835 1 0.350120425224304 experiment 0.696847309472329 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33324843 chr17:33324841 synonymous SNV . 0 19 hm5C_associated_SNPs_18848 0 0 1 0 2 Cytosol 1 0.50023570696902 1 0.999528586061961 hm5C_site_20148 DeepMRMD:1;iRNA_m5C:0.999528586061961 20149 chr6 147830478 147830478 1 + C A CESC 147830460 + 147830440 147830480 41 CCCAAACTGAAGCTGAAGATCATGATCAGGGATAAGCTCGT CCCAAACTGAAGCTGAAGATCATGATCAGGGATAAGCTAGT < 41bp 1 0.67212436002547 1 0.322581648826599 experiment 0.655751279949061 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SAMD5 ENSG00000203727 CDS Human protein_coding chr6:147830460 chr6:147830478 synonymous SNV . 0 39 hm5C_associated_SNPs_18849 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_20149 DeepMRMD:1;iRNA_m5C:0.999536712157815 20150 chr16 56966267 56966267 1 + C G CESC 56966261 + 56966241 56966281 41 GACCGCGGCTGGAGTGTGGGCCACCTCAAGGCCCACCTGAG GACCGCGGCTGGAGTGTGGGCCACCTGAAGGCCCACCTGAG < 41bp 1 0.352140453252222 1 0.134180307388306 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966261 chr16:56966267 synonymous SNV . 0 27 hm5C_associated_SNPs_18850 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20150 DeepMRMD:1;iRNA_m5C:0.999536712157815 20151 chr16 56966267 56966267 1 + C G CESC 56966272 + 56966252 56966292 41 GAGTGTGGGCCACCTCAAGGCCCACCTGAGCCGCGTCTACC GAGTGTGGGCCACCTGAAGGCCCACCTGAGCCGCGTCTACC < 41bp 1 0.284832205151123 1 0.101716995239258 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966272 chr16:56966267 synonymous SNV . 0 16 hm5C_associated_SNPs_18852 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20151 DeepMRMD:1;iRNA_m5C:0.999536712157815 20152 chr16 56966267 56966267 1 + C G CESC 56966273 + 56966253 56966293 41 AGTGTGGGCCACCTCAAGGCCCACCTGAGCCGCGTCTACCC AGTGTGGGCCACCTGAAGGCCCACCTGAGCCGCGTCTACCC < 41bp 1 0.388065748203246 1 0.111738502979279 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966273 chr16:56966267 synonymous SNV . 0 15 hm5C_associated_SNPs_18853 0 0 1 0 1 Ribosome 1 0.500231643906731 1 0.999536712186538 hm5C_site_20152 DeepMRMD:1;iRNA_m5C:0.999536712186538 20153 chr3 169496595 169496595 1 + C G CESC 169496589 + 169496569 169496609 41 GAAATTCATCAGGCTGCTGACTATCTCAAAGTGGAAGAGGT GAAATTCATCAGGCTGCTGACTATCTGAAAGTGGAAGAGGT < 41bp 1 0.135919596886543 1 0.076798141002655 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYNN ENSG00000085274 CDS Human protein_coding chr3:169496589 chr3:169496595 synonymous SNV . 0 27 hm5C_associated_SNPs_18855 0 0 1 0 1 Nucleus 1 0.500231644387961 1 0.999536711224078 hm5C_site_20153 DeepMRMD:1;iRNA_m5C:0.999536711224078 20154 chr1 39910438 39910438 1 + G C CESC 39910457 + 39910437 39910477 41 AGACAGAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAT ACACAGAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAT < 41bp 1 0.0622699904160357 1 0.0521182715892792 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910457 chr1:39910438 nonsynonymous SNV 0.991 2 2 hm5C_associated_SNPs_18856 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643507128 1 0.999536712985744 hm5C_site_20154 DeepMRMD:1;iRNA_m5C:0.999536712985744 20155 chr1 180849254 180849254 1 + G C CESC 180849252 + 180849232 180849272 41 TCCGCCTGGAGAATGAACATCTGAATAACTGTGGTGAATTC TCCGCCTGGAGAATGAACATCTCAATAACTGTGGTGAATTC < 41bp 1 0.643724358285177 1 0.82267838716507 experiment 0.712551283429646 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XPR1 ENSG00000143324 CDS Human protein_coding chr1:180849252 chr1:180849254 synonymous SNV . 0 23 hm5C_associated_SNPs_18857 0 0 1 0 1 Ribosome 1 0.500231685495385 0.35464322566986 0.999536629009231 hm5C_site_20155 DeepMRMD:0.35464322566986;iRNA_m5C:0.999536629009231 20156 chr20 1902301 1902301 1 + G A CESC 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACATCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC < 41bp 1 0.0689265162473602 1 0.0200207531452179 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902301 nonsynonymous SNV 0.805 0 3 hm5C_associated_SNPs_18858 0 0 0 0 1 Nucleus 1 0.500231643921138 1 0.999536712157725 hm5C_site_20156 DeepMRMD:1;iRNA_m5C:0.999536712157725 20157 chr11 2797249 2797249 1 + C T CESC 2797253 + 2797233 2797273 41 ACTCGCAGGGCCACCTCAACCTCATGGTGCGCATCAAGGAG ACTCGCAGGGCCACCTTAACCTCATGGTGCGCATCAAGGAG < 41bp 1 0.557243766176094 1 0.432219177484512 experiment 0.885512467647813 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2797253 chr11:2797249 synonymous SNV . 0 17 hm5C_associated_SNPs_18859 0 0 0 0 2 Nucleus 1 0.500231643921087 1 0.999536712157825 hm5C_site_20157 DeepMRMD:1;iRNA_m5C:0.999536712157825 20158 chr11 6631719 6631719 1 + C T CESC 6631708 + 6631688 6631728 41 CGCAGGTGGCATTGGAAGGCCTTCGGCCTACCATCCCACCA CGCAGGTGGCATTGGAAGGCCTTCGGCCTACTATCCCACCA < 41bp 1 0.341365170307705 1 0.394572556018829 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6631708 chr11:6631719 synonymous SNV . 0 32 hm5C_associated_SNPs_18860 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643075174 1 0.999536713849653 hm5C_site_20158 DeepMRMD:1;iRNA_m5C:0.999536713849653 20159 chr17 30692357 30692357 1 + C T CESC 30692372 + 30692352 30692392 41 TGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT TGCCCTCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT < 41bp 1 0.252474807711144 1 0.236514180898666 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692372 chr17:30692357 nonsynonymous SNV 0.930 3 6 hm5C_associated_SNPs_18861 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20159 DeepMRMD:1;iRNA_m5C:0.999536712157815 20160 chr14 24707984 24707984 1 + G T CESC 24707977 + 24707957 24707997 41 GAATCCAATCTTCAGTGAGGCGTGCTAGACCTGAGCAGTTC GAATCCAATCTTCAGTGAGGCGTGCTATACCTGAGCAGTTC < 41bp 1 0.420372096565359 1 0.214963465929031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPR2 ENSG00000100938 CDS Human protein_coding chr14:24707977 chr14:24707984 stoploss 0.066 0 28 hm5C_associated_SNPs_18862 0 0 1 0 0 Ribosome 1 0.500231643792578 1 0.999536712414844 hm5C_site_20160 DeepMRMD:1;iRNA_m5C:0.999536712414844 20161 chr8 26505266 26505266 1 + A C CESC 26505249 + 26505229 26505269 41 AGGCCGCATTGCTGTGGGATCCGATGCCGACCTGGTCATCT AGGCCGCATTGCTGTGGGATCCGATGCCGACCTGGTCCTCT < 41bp 1 0.186766350008819 1 0.208471059799194 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26505249 chr8:26505266 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_18863 0 0 1 0 0 Nucleus 1 0.500231643736924 1 0.999536712526153 hm5C_site_20161 DeepMRMD:1;iRNA_m5C:0.999536712526153 20162 chr6 168363158 168363158 1 + C T CESC 168363160 + 168363140 168363180 41 CAGCAGTTAGAAGAGATGCGCAAGCGGGAAGCGGAAGACCG CAGCAGTTAGAAGAGATGTGCAAGCGGGAAGCGGAAGACCG < 41bp 1 0.292409086334136 1 0.486234545707703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363160 chr6:168363158 nonsynonymous SNV 0.849 3 19 hm5C_associated_SNPs_18864 0 0 1 0 3 unknown 1 0.500232085141069 1 0.999535829717863 hm5C_site_20162 DeepMRMD:1;iRNA_m5C:0.999535829717863 20163 chr2 157406260 157406260 1 + G A CESC 157406248 + 157406228 157406268 41 ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCACACGGTGC < 41bp 1 0.597437665575455 1 0.34377732872963 experiment 0.805124668849091 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406248 chr2:157406260 nonsynonymous SNV 0.157 2 33 hm5C_associated_SNPs_18865 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644526073 1 0.999536710947854 hm5C_site_20163 DeepMRMD:1;iRNA_m5C:0.999536710947854 20164 chr19 14024282 14024282 1 + G A CESC 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCCACCAGTGGCCATAGGAAAAGGCCCGGCGT < 41bp 1 0.198756301706461 1 0.190018594264984 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024282 synonymous SNV . 0 13 hm5C_associated_SNPs_18866 0 0 0 0 1 chromatin 1 0.500231643920737 1 0.999536712158526 hm5C_site_20164 DeepMRMD:1;iRNA_m5C:0.999536712158526 20165 chr19 18053578 18053578 1 + G A CESC 18053574 + 18053554 18053594 41 CGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC CGGCAAGGCGCCGCGGGTGGCCACATCCAGCAAGGTCACCC < 41bp 1 0.508509038670453 1 0.0952799618244171 experiment 0.982981922659094 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053574 chr19:18053578 synonymous SNV . 0 25 hm5C_associated_SNPs_18868 0 0 1 0 1 Ribosome 1 0.500231643928802 1 0.999536712142397 hm5C_site_20165 DeepMRMD:1;iRNA_m5C:0.999536712142397 20166 chr19 18053578 18053578 1 + G A CESC 18053575 + 18053555 18053595 41 GGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCCG GGCAAGGCGCCGCGGGTGGCCACATCCAGCAAGGTCACCCG < 41bp 1 0.516478245425661 1 0.754170060157776 experiment 0.967043509148678 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053575 chr19:18053578 synonymous SNV . 0 24 hm5C_associated_SNPs_18869 0 0 1 0 1 Ribosome 1 0.500231642923789 0.491659879684448 0.999536714152423 hm5C_site_20166 DeepMRMD:0.491659879684448;iRNA_m5C:0.999536714152423 20167 chr9 96411458 96411458 1 + T C CESC 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GCACCAACCGCAAGCGGGCCCTCAACGTCACCAACCTCGAG < 41bp 1 0.509255986770788 1 0.202339798212051 experiment 0.981488026458424 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411458 nonsynonymous SNV 0.995 4 19 hm5C_associated_SNPs_18870 0 0 1 0 1 chromatin 1 0.500231662600349 1 0.999536674799302 hm5C_site_20167 DeepMRMD:1;iRNA_m5C:0.999536674799302 20168 chr16 22337243 22337243 1 + G A CESC 22337234 + 22337214 22337254 41 GTGTGCGGATCAAGGAGGAGCCCGTGAGCGAGGAGGGCGAG GTGTGCGGATCAAGGAGGAGCCCGTGAGCAAGGAGGGCGAG < 41bp 1 0.511034299282541 1 0.22044762969017 experiment 0.977931401434919 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337234 chr16:22337243 nonsynonymous SNV 0.872 1 30 hm5C_associated_SNPs_18871 0 0 1 0 0 Ribosome 1 0.500231643921293 1 0.999536712157414 hm5C_site_20168 DeepMRMD:1;iRNA_m5C:0.999536712157414 20169 chr16 22337243 22337243 1 + G A CESC 22337235 + 22337215 22337255 41 TGTGCGGATCAAGGAGGAGCCCGTGAGCGAGGAGGGCGAGG TGTGCGGATCAAGGAGGAGCCCGTGAGCAAGGAGGGCGAGG < 41bp 1 0.326910807892664 1 0.262722492218018 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337235 chr16:22337243 nonsynonymous SNV 0.872 1 29 hm5C_associated_SNPs_18872 0 0 1 0 0 Ribosome 1 0.500232020178284 1 0.999535959643431 hm5C_site_20169 DeepMRMD:1;iRNA_m5C:0.999535959643431 20170 chrX 149924193 149924193 1 + G A CESC 149924206 + 149924186 149924226 41 TATGGTCGTATATCAATAGCCAGCTAGACGAGTTTTCTAAT TATGGTCATATATCAATAGCCAGCTAGACGAGTTTTCTAAT < 41bp 1 0.276166694005545 1 0.744213581085205 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149924206 chrX:149924193 synonymous SNV . 0 8 hm5C_associated_SNPs_18873 0 0 0 0 1 Ribosome 1 0.500231644225454 0.51157283782959 0.999536711549092 hm5C_site_20170 DeepMRMD:0.51157283782959;iRNA_m5C:0.999536711549092 20171 chr21 47986589 47986589 1 + G A CESC 47986588 + 47986568 47986608 41 ATCCGAGCACACAGGAGCATCGCTGAGTGGTAAGAGCCCAG ATCCGAGCACACAGGAGCATCACTGAGTGGTAAGAGCCCAG < 41bp 1 0.318059058968809 1 0.159271121025085 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986588 chr21:47986589 nonsynonymous SNV 0.972 2 22 hm5C_associated_SNPs_18874 0 0 1 0 1 Cytosol 1 0.500231626246531 1 0.999536747506938 hm5C_site_20171 DeepMRMD:1;iRNA_m5C:0.999536747506938 20172 chr2 27157528 27157528 1 + G A CESC 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCAGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG < 41bp 1 0.413327696261008 1 0.900439262390137 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157528 synonymous SNV . 0 7 hm5C_associated_SNPs_18875 0 0 0 0 2 Ribosome 1 0.50023164392123 0.199121475219726 0.99953671215754 hm5C_site_20172 DeepMRMD:0.199121475219726;iRNA_m5C:0.99953671215754 20173 chr7 142458521 142458521 1 + C T CESC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTT < 41bp 1 0.177382172291335 1 0.309405028820038 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458521 synonymous SNV . 0 41 hm5C_associated_SNPs_18876 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20173 DeepMRMD:1;iRNA_m5C:0.999536712157815 20174 chr7 142458521 142458521 1 + C T CESC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTTAT < 41bp 1 0.304439321637162 1 0.643358111381531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458521 synonymous SNV . 0 39 hm5C_associated_SNPs_18877 0 0 0 0 2 Cytosol 1 0.50023164384992 0.713283777236938 0.999536712300159 hm5C_site_20174 DeepMRMD:0.713283777236938;iRNA_m5C:0.999536712300159 20175 chr7 142458521 142458521 1 + C T CESC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTTATCAA < 41bp 1 0.562984165528395 1 0.218485534191132 experiment 0.87403166894321 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458521 synonymous SNV . 0 36 hm5C_associated_SNPs_18878 0 0 0 0 2 Cytosol 1 0.500231643920887 1 0.999536712158227 hm5C_site_20175 DeepMRMD:1;iRNA_m5C:0.999536712158227 20176 chr7 142458521 142458521 1 + C T CESC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTTATCAACGAACAGTG < 41bp 1 0.326792859588249 1 0.101595669984818 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458521 synonymous SNV . 0 27 hm5C_associated_SNPs_18879 0 0 0 0 2 Cytosol 1 0.500231390531743 1 0.999537218936514 hm5C_site_20176 DeepMRMD:1;iRNA_m5C:0.999537218936514 20177 chr7 142458521 142458521 1 + C T CESC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTTATCAACGAACAGTGGG < 41bp 1 0.11871726235794 1 0.0319055020809174 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458521 synonymous SNV . 0 25 hm5C_associated_SNPs_18880 0 0 0 0 2 Cytosol 1 0.500224060904237 1 0.999551878191526 hm5C_site_20177 DeepMRMD:1;iRNA_m5C:0.999551878191526 20178 chr7 142458521 142458521 1 + C T CESC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTTATCAACGAACAGTGGGT < 41bp 1 0.0644598036652054 1 0.0468072295188904 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458521 synonymous SNV . 0 24 hm5C_associated_SNPs_18881 0 0 0 0 2 Cytosol 1 0.500231635402369 1 0.999536729195262 hm5C_site_20178 DeepMRMD:1;iRNA_m5C:0.999536729195262 20179 chr7 142458521 142458521 1 + C T CESC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTTATCAACGAACAGTGGGTG < 41bp 1 0.159350333375128 1 0.14717173576355 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458521 synonymous SNV . 0 23 hm5C_associated_SNPs_18882 0 0 0 0 2 Cytosol 1 0.500231299925649 1 0.999537400148701 hm5C_site_20179 DeepMRMD:1;iRNA_m5C:0.999537400148701 20180 chr7 142458521 142458521 1 + C T CESC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTTATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.399317784540916 1 0.514352381229401 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458521 synonymous SNV . 0 15 hm5C_associated_SNPs_18884 0 0 0 0 2 Cytosol 1 0.500231645067781 0.971295237541198 0.999536709864439 hm5C_site_20180 DeepMRMD:0.971295237541198;iRNA_m5C:0.999536709864439 20181 chr7 142458521 142458521 1 + C T CESC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTTATCAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.482423237873151 1 0.263899892568588 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458521 synonymous SNV . 0 11 hm5C_associated_SNPs_18885 0 0 0 0 2 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_20181 DeepMRMD:1;iRNA_m5C:0.999536712157808 20182 chr21 47754526 47754526 1 + C T CESC 47754537 + 47754517 47754557 41 GTTCACAGTCAGTGACCACCCACCAGAACAGCGTGGGATGT GTTCACAGTTAGTGACCACCCACCAGAACAGCGTGGGATGT < 41bp 1 0.65717392636575 1 0.445915818214417 experiment 0.6856521472685 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47754537 chr21:47754526 synonymous SNV . 0 10 hm5C_associated_SNPs_18886 0 0 1 0 0 Exosome 1 0.500231791527592 1 0.999536416944816 hm5C_site_20182 DeepMRMD:1;iRNA_m5C:0.999536416944816 20183 chr5 65350661 65350661 1 + G C CESC 65350670 + 65350650 65350690 41 TCCTTCAAAAAGACCAAATGCAAGGGTTGGTTCTGAGCATT TCCTTCAAAAACACCAAATGCAAGGGTTGGTTCTGAGCATT < 41bp 1 0.569451936520636 1 0.490462839603424 experiment 0.861096126958728 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ERBIN ENSG00000112851 CDS Human protein_coding chr5:65350670 chr5:65350661 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_18887 0 0 1 0 0 Nucleus 1 0.500231643602648 1 0.999536712794704 hm5C_site_20183 DeepMRMD:1;iRNA_m5C:0.999536712794704 20184 chr14 56233296 56233296 1 + G A CESC 56233306 + 56233286 56233326 41 AAGCCTACAAGAAAGTTTGCCCTTCTGGGGCGACAGGCTCA AAGCCTACAAAAAAGTTTGCCCTTCTGGGGCGACAGGCTCA < 41bp 1 0.027419758973697 1 0.0456478595733643 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233306 chr14:56233296 . . 0 11 hm5C_associated_SNPs_18888 0 0 0 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_20184 DeepMRMD:1;iRNA_m5C:0.999536712157814 20185 chr7 150737370 150737370 1 + C G CESC 150737364 + 150737344 150737384 41 TTTTCTGACAGGTCCATGGCCAACCTCTCTGTCCTGTTTGG TTTTCTGACAGGTCCATGGCCAACCTGTCTGTCCTGTTTGG < 41bp 1 0.190017851119941 1 0.0182360410690308 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737364 chr7:150737370 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_18889 0 0 1 0 2 Ribosome 1 0.500231643921088 1 0.999536712157825 hm5C_site_20185 DeepMRMD:1;iRNA_m5C:0.999536712157825 20186 chr10 16526606 16526606 1 + C T CESC 16526619 + 16526599 16526639 41 ATTAAATCAGGAGACAGAAGCCATAAAGGAAGAACTGTTGT ATTAAATTAGGAGACAGAAGCCATAAAGGAAGAACTGTTGT < 41bp 1 0.278882636703159 1 0.142280369997025 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTER ENSG00000165983 CDS Human protein_coding chr10:16526619 chr10:16526606 stopgain 0.907 1 8 hm5C_associated_SNPs_18890 0 0 0 0 0 chromatin 1 0.500231643924027 1 0.999536712151946 hm5C_site_20186 DeepMRMD:1;iRNA_m5C:0.999536712151946 20187 chr19 806433 806433 1 + C T CESC 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG GAACGTCCACGGTGCCCTGGCCCCCCTGGCCATCCCCTCGG < 41bp 1 0.282529541906051 1 0.0362357199192047 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806433 synonymous SNV . 0 13 hm5C_associated_SNPs_18891 0 0 1 0 1 Cytosol 1 0.500231644036988 1 0.999536711926024 hm5C_site_20187 DeepMRMD:1;iRNA_m5C:0.999536711926024 20188 chr19 806433 806433 1 + C T CESC 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AACGTCCACGGTGCCCTGGCCCCCCTGGCCATCCCCTCGGC < 41bp 1 0.312038218666627 1 0.0711410641670227 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806433 synonymous SNV . 0 12 hm5C_associated_SNPs_18892 0 0 1 0 1 Cytosol 1 0.500231643902111 1 0.999536712195778 hm5C_site_20188 DeepMRMD:1;iRNA_m5C:0.999536712195778 20189 chr19 806433 806433 1 + C T CESC 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCACGGTGCCCTGGCCCCCCTGGCCATCCCCTCGGCG < 41bp 1 0.430243112800745 1 0.0240912139415741 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806433 synonymous SNV . 0 11 hm5C_associated_SNPs_18893 0 0 1 0 1 Cytosol 1 0.50023164536197 1 0.999536709276059 hm5C_site_20189 DeepMRMD:1;iRNA_m5C:0.999536709276059 20190 chr19 806433 806433 1 + C T CESC 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCACGGTGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG < 41bp 1 0.51900360473638 1 0.267359524965286 experiment 0.961992790527241 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806433 synonymous SNV . 0 10 hm5C_associated_SNPs_18894 0 0 1 0 1 Cytosol 1 0.500231644015727 1 0.999536711968546 hm5C_site_20190 DeepMRMD:1;iRNA_m5C:0.999536711968546 20191 chr19 806433 806433 1 + C T CESC 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCACGGTGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC < 41bp 1 0.530394065804957 1 0.326674073934555 experiment 0.939211868390087 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806433 synonymous SNV . 0 9 hm5C_associated_SNPs_18895 0 0 1 0 1 Cytosol 1 0.500234554903584 1 0.999530890192832 hm5C_site_20191 DeepMRMD:1;iRNA_m5C:0.999530890192832 20192 chr19 806433 806433 1 + C T CESC 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGTGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG < 41bp 1 0.0706006196808606 1 0.164982169866562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806433 synonymous SNV . 0 4 hm5C_associated_SNPs_18897 0 0 1 0 1 Cytosol 1 0.500231643982294 1 0.999536712035412 hm5C_site_20192 DeepMRMD:1;iRNA_m5C:0.999536712035412 20193 chr19 806433 806433 1 + C T CESC 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGTGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC < 41bp 1 0.217123267262963 1 0.0813136398792267 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806433 synonymous SNV . 0 3 hm5C_associated_SNPs_18898 0 0 1 0 1 Cytosol 1 0.500231643838356 1 0.999536712323288 hm5C_site_20193 DeepMRMD:1;iRNA_m5C:0.999536712323288 20194 chr14 64676741 64676741 1 + C T CESC 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTACCGGCGGCTGGCCCGGGAGAACTGCACAGACACG < 41bp 1 0.568088952121049 1 0.93984442949295 experiment 0.863822095757902 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676741 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_18900 0 0 0 0 2 Nucleus 1 0.500231637439483 0.1203111410141 0.999536725121034 hm5C_site_20194 DeepMRMD:0.1203111410141;iRNA_m5C:0.999536725121034 20195 chr4 7026927 7026927 1 + G A CESC 7026933 + 7026913 7026953 41 AGGACCTGCCCGCCGAGGAGCTGTTTGCCTCCATCGCCACG AGGACCTGCCCGCCAAGGAGCTGTTTGCCTCCATCGCCACG < 41bp 1 0.21945569784386 1 0.0218005776405334 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:7026933 chr4:7026927 nonsynonymous SNV 0.788 0 15 hm5C_associated_SNPs_18901 0 0 1 0 1 Cytosol 1 0.500231084360007 1 0.999537831279986 hm5C_site_20195 DeepMRMD:1;iRNA_m5C:0.999537831279986 20196 chr1 145368527 145368527 1 + T G CESC 145368536 + 145368516 145368556 41 GTCAATGTACTTTGAACTACCTGACTCATTCCAGCACTACA GTCAATGTACTGTGAACTACCTGACTCATTCCAGCACTACA < 41bp 1 0.0949150131136907 1 0.147605299949646 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368536 chr1:145368527 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_18902 0 0 0 0 1 exosome 1 0.500232505713457 1 0.999534988573086 hm5C_site_20196 DeepMRMD:1;iRNA_m5C:0.999534988573086 20197 chr1 145368527 145368527 1 + T G CESC 145368540 + 145368520 145368560 41 ATGTACTTTGAACTACCTGACTCATTCCAGCACTACAGAAG ATGTACTGTGAACTACCTGACTCATTCCAGCACTACAGAAG < 41bp 1 0.083380322000913 1 0.103927493095398 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368540 chr1:145368527 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_18903 0 0 0 0 1 exosome 1 0.500231644390045 1 0.99953671121991 hm5C_site_20197 DeepMRMD:1;iRNA_m5C:0.99953671121991 20198 chr7 154720379 154720379 1 + G A CESC 154720373 + 154720353 154720393 41 GCCCGTATGTCTGGTGAAGTCAGTTGGATGCAAGCAGTTTG GCCCGTATGTCTGGTGAAGTCAGTTGAATGCAAGCAGTTTG < 41bp 1 0.639295739681456 1 0.648983001708984 experiment 0.721408520637089 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAXIP1-AS2 ENSG00000214106 CDS Human antisense chr7:154720373 chr7:154720379 stopgain . 0 27 hm5C_associated_SNPs_18904 0 0 1 0 1 unknown 1 0.500231646234224 0.702033996582032 0.999536707531551 hm5C_site_20198 DeepMRMD:0.702033996582032;iRNA_m5C:0.999536707531551 20199 chr4 126412246 126412246 1 + C T CESC 126412244 + 126412224 126412264 41 GGGAAGGAGAAGCAAGAGTCCTCAGGCCATGGCATCACATG GGGAAGGAGAAGCAAGAGTCCTTAGGCCATGGCATCACATG < 41bp 1 0.108575387054509 1 0.215847015380859 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126412244 chr4:126412246 stopgain 0.997 0 23 hm5C_associated_SNPs_18905 0 0 0 0 0 Endoplasmic reticulum 1 0.500231651373961 1 0.999536697252079 hm5C_site_20199 DeepMRMD:1;iRNA_m5C:0.999536697252079 20200 chr14 60591555 60591555 1 + G A CESC 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTCTATTAGGATACCCTGCTGTTGACAAAGAAAAACAAG < 41bp 1 0.182887416996614 1 0.230573356151581 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591555 nonsynonymous SNV 0.964 4 33 hm5C_associated_SNPs_18906 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643922432 1 0.999536712155137 hm5C_site_20200 DeepMRMD:1;iRNA_m5C:0.999536712155137 20201 chr19 47111774 47111774 1 + A T CESC 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCGGAGTTCCTGACCTTGATGGCCAGAAAGATGA < 41bp 1 0.0422204423293185 1 0.0439402759075165 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111774 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_18907 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20201 DeepMRMD:1;iRNA_m5C:0.999536712157815 20202 chr19 47111774 47111774 1 + A T CESC 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTCCTGACCTTGATGGCCAGAAAGATGAAGGACACAGA < 41bp 1 0.577228471746535 1 0.737078666687012 experiment 0.845543056506931 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111774 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_18908 0 0 1 0 2 Ribosome 1 0.500231644078298 0.525842666625976 0.999536711843404 hm5C_site_20202 DeepMRMD:0.525842666625976;iRNA_m5C:0.999536711843404 20203 chr5 21491503 21491503 1 + A C CESC 21491518 + 21491498 21491538 41 TCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGG TCAGACAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGG < 41bp 1 0.140223121001934 1 0.088182270526886 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21491518 chr5:21491503 . . 0 6 hm5C_associated_SNPs_18909 0 0 1 0 1 unknown 1 0.500231643911214 1 0.999536712177572 hm5C_site_20203 DeepMRMD:1;iRNA_m5C:0.999536712177572 20204 chr16 67006823 67006823 1 + C G CESC 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAATTCAACCAGGCGGAACAATATCTGGAGATGAACCCA < 41bp 1 0.254649301029406 1 0.422655344009399 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006823 nonsynonymous SNV 0.000 2 35 hm5C_associated_SNPs_18910 0 0 1 0 1 nucleolus 1 0.500231643920552 1 0.999536712158897 hm5C_site_20204 DeepMRMD:1;iRNA_m5C:0.999536712158897 20205 chr3 13672280 13672280 1 + G C CESC 13672281 + 13672261 13672301 41 CAGTGCTACTGCCGCCAGGGCTACCAGCTGGCTGAGGATGG CAGTGCTACTGCCGCCAGGCCTACCAGCTGGCTGAGGATGG < 41bp 1 0.113238510523221 1 0.0715832710266113 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672281 chr3:13672280 nonsynonymous SNV 0.997 5 20 hm5C_associated_SNPs_18911 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644483641 1 0.999536711032718 hm5C_site_20205 DeepMRMD:1;iRNA_m5C:0.999536711032718 20206 chr3 13672280 13672280 1 + G C CESC 13672285 + 13672265 13672305 41 GCTACTGCCGCCAGGGCTACCAGCTGGCTGAGGATGGGCAC GCTACTGCCGCCAGGCCTACCAGCTGGCTGAGGATGGGCAC < 41bp 1 0.597049865505337 1 0.396116673946381 experiment 0.805900268989326 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672285 chr3:13672280 nonsynonymous SNV 0.997 5 16 hm5C_associated_SNPs_18912 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643930104 1 0.999536712139793 hm5C_site_20206 DeepMRMD:1;iRNA_m5C:0.999536712139793 20207 chr12 56214128 56214128 1 + G A CESC 56214120 + 56214100 56214140 41 CAGCCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAG CAGCCTCATTGCTAAGTGTACTGCTGCCAAAGTTGCCCCAG < 41bp 1 0.699974035798595 1 0.320162653923035 experiment 0.600051928402811 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human other chr12:56214120 chr12:56214128 synonymous SNV . 0 29 hm5C_associated_SNPs_18913 0 0 1 0 1 Ribosome 1 0.500231648578521 1 0.999536702842959 hm5C_site_20207 DeepMRMD:1;iRNA_m5C:0.999536702842959 20208 chr12 56214128 56214128 1 + G A CESC 56214123 + 56214103 56214143 41 CCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAGTTC CCTCATTGCTAAGTGTACTGCTGCCAAAGTTGCCCCAGTTC < 41bp 1 0.505334464887326 1 0.200903326272964 experiment 0.989331070225347 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human other chr12:56214123 chr12:56214128 synonymous SNV . 0 26 hm5C_associated_SNPs_18914 0 0 1 0 1 Ribosome 1 0.500231630443428 1 0.999536739113144 hm5C_site_20208 DeepMRMD:1;iRNA_m5C:0.999536739113144 20209 chr8 30332338 30332338 1 + C A CESC 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACAT < 41bp 1 0.0753779296155367 1 0.0503045320510864 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332338 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_18915 0 0 1 0 2 Nucleus 1 0.50023164394751 1 0.99953671210498 hm5C_site_20209 DeepMRMD:1;iRNA_m5C:0.99953671210498 20210 chr10 86273291 86273291 1 + C T CESC 86273305 + 86273285 86273325 41 CGAGGCCCGCAGTGAATGCTCAATCCAAGACATGCATCAGG CGAGGCTCGCAGTGAATGCTCAATCCAAGACATGCATCAGG < 41bp 1 0.186385559065757 1 0.108706533908844 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCSER2 ENSG00000107771 CDS Human protein_coding chr10:86273305 chr10:86273291 nonsynonymous SNV 0.986 2 7 hm5C_associated_SNPs_18918 0 0 0 0 1 Cytosol 1 0.500231643921226 1 0.999536712157547 hm5C_site_20210 DeepMRMD:1;iRNA_m5C:0.999536712157547 20211 chr12 111744758 111744758 1 + C T CESC 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCGGGCCCTTGGCTGGAGGCCGCGCTGGCCTCCAAGGACA < 41bp 1 0.286920205552226 1 0.0884579420089722 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744758 nonsynonymous SNV 0.557 3 11 hm5C_associated_SNPs_18919 0 0 0 0 1 exosome 1 0.500231643921122 1 0.999536712157755 hm5C_site_20211 DeepMRMD:1;iRNA_m5C:0.999536712157755 20212 chr12 111744758 111744758 1 + C T CESC 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCGGGCCCTTGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG < 41bp 1 0.301735109300819 1 0.385061115026474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744758 nonsynonymous SNV 0.557 3 10 hm5C_associated_SNPs_18920 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20212 DeepMRMD:1;iRNA_m5C:0.999536712157815 20213 chr12 111744758 111744758 1 + C T CESC 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TTGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC < 41bp 1 0.0309383274525191 1 0.0620581209659576 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744758 nonsynonymous SNV 0.557 3 2 hm5C_associated_SNPs_18921 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20213 DeepMRMD:1;iRNA_m5C:0.999536712157815 20214 chr12 111744758 111744758 1 + C T CESC 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT TGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT < 41bp 1 0.572457102154101 1 0.965907216072083 experiment 0.855085795691799 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744758 nonsynonymous SNV 0.557 3 1 hm5C_associated_SNPs_18922 0 0 0 0 1 exosome 1 0.500231644035531 0.0681855678558341 0.999536711928938 hm5C_site_20214 DeepMRMD:0.0681855678558341;iRNA_m5C:0.999536711928938 20215 chr16 75682407 75682407 1 + C G CESC 75682389 + 75682369 75682409 41 CTGGGGGACGCGCCGGTGAGCCCCTCCTCCCAGAAGCTCAA CTGGGGGACGCGCCGGTGAGCCCCTCCTCCCAGAAGCTGAA < 41bp 1 0.292859196115044 1 0.064107209444046 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TERF2IP ENSG00000166848 CDS Human protein_coding chr16:75682389 chr16:75682407 synonymous SNV . 0 39 hm5C_associated_SNPs_18923 0 0 1 0 1 Ribosome 1 0.500231643937246 1 0.999536712125509 hm5C_site_20215 DeepMRMD:1;iRNA_m5C:0.999536712125509 20216 chr16 75682407 75682407 1 + C G CESC 75682394 + 75682374 75682414 41 GGACGCGCCGGTGAGCCCCTCCTCCCAGAAGCTCAAGCGGA GGACGCGCCGGTGAGCCCCTCCTCCCAGAAGCTGAAGCGGA < 41bp 1 0.087707239245096 1 0.551478385925293 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TERF2IP ENSG00000166848 CDS Human protein_coding chr16:75682394 chr16:75682407 synonymous SNV . 0 34 hm5C_associated_SNPs_18924 0 0 1 0 1 Ribosome 1 0.500231643923058 0.897043228149414 0.999536712153885 hm5C_site_20216 DeepMRMD:0.897043228149414;iRNA_m5C:0.999536712153885 20217 chr11 62553746 62553746 1 + C T CESC 62553759 + 62553739 62553779 41 AACGAGTCCTGTACCCACACCTGTCCACCTACTGGACAAAC AACGAGTTCTGTACCCACACCTGTCCACCTACTGGACAAAC < 41bp 1 0.0617355792250196 1 0.0974876582622528 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62553759 chr11:62553746 synonymous SNV . 0 8 hm5C_associated_SNPs_18925 0 0 1 0 1 Ribosome 1 0.500231643724594 1 0.999536712550811 hm5C_site_20217 DeepMRMD:1;iRNA_m5C:0.999536712550811 20218 chr9 140110253 140110253 1 + G A CESC 140110236 + 140110216 140110256 41 TCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAGACT TCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAAACT < 41bp 1 0.280051634097061 1 0.137399047613144 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110236 chr9:140110253 synonymous SNV . 0 38 hm5C_associated_SNPs_18926 0 0 0 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_20218 DeepMRMD:1;iRNA_m5C:0.999536712157815 20219 chr17 27047756 27047756 1 + G A CESC 27047736 + 27047716 27047756 41 TTCTCCCAGCTCCTGCCCCTCCTAAAGCTGAAGCCAAAGCG TTCTCCCAGCTCCTGCCCCTCCTAAAGCTGAAGCCAAAGCA < 41bp 1 0.191070606839904 1 0.141774833202362 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL23A ENSG00000198242 CDS Human protein_coding chr17:27047736 chr17:27047756 synonymous SNV . 0 41 hm5C_associated_SNPs_18927 0 0 0 0 1 Cytosol 1 0.500231643920788 1 0.999536712158424 hm5C_site_20219 DeepMRMD:1;iRNA_m5C:0.999536712158424 20220 chrX 73046776 73046776 1 + C T CESC 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGGCCTAAGTTGGATGGAAGTCTC < 41bp 1 0.176544666559504 1 0.621666371822357 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046776 . . 0 24 hm5C_associated_SNPs_18929 0 0 1 3 0 unknown 1 0.500231643921084 0.756667256355286 0.999536712157833 hm5C_site_20220 DeepMRMD:0.756667256355286;iRNA_m5C:0.999536712157833 20221 chrX 73046776 73046776 1 + C T CESC 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCGAAGGCCTAAGTTGGATGG < 41bp 1 0.369674782234892 1 0.159264743328094 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046776 . . 0 31 hm5C_associated_SNPs_18930 0 0 1 3 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_20221 DeepMRMD:1;iRNA_m5C:0.999536712157815 20222 chr22 51117841 51117841 1 + T C CESC 51117853 + 51117833 51117873 41 CACATCTGTGCCCTCTACAACCAGGTGCGACTGTGTGTCCT CACATCTGCGCCCTCTACAACCAGGTGCGACTGTGTGTCCT < 41bp 1 0.237454965643912 1 0.679156541824341 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51117853 chr22:51117841 synonymous SNV . 0 9 hm5C_associated_SNPs_18931 0 0 0 0 1 cytosol 1 0.500231641565033 0.641686916351318 0.999536716869935 hm5C_site_20222 DeepMRMD:0.641686916351318;iRNA_m5C:0.999536716869935 20223 chr7 128486419 128486419 1 + C T CESC 128486405 + 128486385 128486425 41 AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGTGTGACC < 41bp 1 0.0220800264672262 1 0.0259375870227814 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486405 chr7:128486419 synonymous SNV . 0 35 hm5C_associated_SNPs_18932 0 0 1 0 2 chromatin 1 0.500231644154341 1 0.999536711691318 hm5C_site_20223 DeepMRMD:1;iRNA_m5C:0.999536711691318 20224 chr9 106874063 106874063 1 + G C CESC 106874053 + 106874033 106874073 41 CTTGCTGGTCAAATGATGGCCTGTAAAAATGATATAAGTAA CTTGCTGGTCAAATGATGGCCTGTAAAAATCATATAAGTAA < 41bp 1 0.425022838414563 1 0.191385060548782 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106874053 chr9:106874063 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_18934 0 0 1 0 0 Cytosol 1 0.500231553046292 1 0.999536893907416 hm5C_site_20224 DeepMRMD:1;iRNA_m5C:0.999536893907416 20225 chr1 45218872 45218872 1 + G C CESC 45218862 + 45218842 45218882 41 ATACCATTGAGGATGGTCAGCGAGGAGATGGAAGAGCAAGT ATACCATTGAGGATGGTCAGCGAGGAGATGCAAGAGCAAGT < 41bp 1 0.605742352013975 1 0.54876697063446 experiment 0.788515295972051 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218862 chr1:45218872 nonsynonymous SNV 0.943 0 31 hm5C_associated_SNPs_18935 0 0 1 0 2 Nucleus 1 0.500231643921091 0.90246605873108 0.999536712157818 hm5C_site_20225 DeepMRMD:0.90246605873108;iRNA_m5C:0.999536712157818 20226 chr14 61201637 61201637 1 + G A CESC 61201633 + 61201613 61201653 41 CACCAAATATCGGAACCCCTCCTTGAAGCTGATGGTGAATG CACCAAATATCGGAACCCCTCCTTAAAGCTGATGGTGAATG < 41bp 1 0.202350661688183 1 0.193663597106934 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61201633 chr14:61201637 synonymous SNV . 0 25 hm5C_associated_SNPs_18936 0 0 1 0 1 Ribosome 1 0.500231644007266 1 0.999536711985468 hm5C_site_20226 DeepMRMD:1;iRNA_m5C:0.999536711985468 20227 chr12 95694220 95694220 1 + G T CESC 95694232 + 95694212 95694252 41 AGCAGATGGAAGTGGTCTGACCACTGCCCCTCCAACTCCCA AGCAGATGTAAGTGGTCTGACCACTGCCCCTCCAACTCCCA < 41bp 1 0.309182797162528 1 0.177170604467392 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95694232 chr12:95694220 nonsynonymous SNV 0.001 0 9 hm5C_associated_SNPs_18937 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644109929 1 0.999536711780143 hm5C_site_20227 DeepMRMD:1;iRNA_m5C:0.999536711780143 20228 chr8 99102059 99102059 1 + G C CESC 99102068 + 99102048 99102088 41 CAGAAGTATTGGACAGAAGTCAGCTTGTGGAAAAGCCTGTT CAGAAGTATTGCACAGAAGTCAGCTTGTGGAAAAGCCTGTT < 41bp 1 0.451443529887855 1 0.336636900901794 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERICH5 ENSG00000177459 CDS Human protein_coding chr8:99102068 chr8:99102059 nonsynonymous SNV 0.002 2 12 hm5C_associated_SNPs_18938 0 0 0 0 0 exosome 1 0.500231609860611 1 0.999536780278778 hm5C_site_20228 DeepMRMD:1;iRNA_m5C:0.999536780278778 20229 chr8 145139176 145139176 1 + C T CESC 145139185 + 145139165 145139205 41 CTTGACCTGCTCAATCTCTTCCAGACCTTCTGCCAGAAAGG CTTGACCTGCTTAATCTCTTCCAGACCTTCTGCCAGAAAGG < 41bp 1 0.476528410318516 1 0.266349792480469 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139185 chr8:145139176 synonymous SNV . 0 12 hm5C_associated_SNPs_18940 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643812286 1 0.999536712375428 hm5C_site_20229 DeepMRMD:1;iRNA_m5C:0.999536712375428 20230 chr11 610312 610312 1 + C T CESC 610293 + 610273 610313 41 CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTTC < 41bp 1 0.0301514485853676 1 0.0246386528015137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610293 chr11:610312 nonsynonymous SNV 0.021 0 40 hm5C_associated_SNPs_18941 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20230 DeepMRMD:1;iRNA_m5C:0.999536712157815 20231 chr16 16228308 16228308 1 + C T CESC 16228293 + 16228273 16228313 41 GAGTCTGCCGAAGGAGAGATCATCATCGATGGCATCAACAT GAGTCTGCCGAAGGAGAGATCATCATCGATGGCATTAACAT < 41bp 1 0.290880579834058 1 0.0588373839855194 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16228293 chr16:16228308 synonymous SNV . 0 36 hm5C_associated_SNPs_18942 0 0 1 0 1 Mitochondrion 1 0.500231648714059 1 0.999536702571882 hm5C_site_20231 DeepMRMD:1;iRNA_m5C:0.999536702571882 20232 chr6 3152763 3152763 1 + G A CESC 3152743 + 3152723 3152763 41 CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTTGCG CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTTGCA < 41bp 1 0.114808679517537 1 0.448444217443466 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BPHL ENSG00000137274 CDS Human protein_coding chr6:3152743 chr6:3152763 nonsynonymous SNV 0.987 4 41 hm5C_associated_SNPs_18943 0 0 1 0 1 Ribosome 1 0.500231638165574 1 0.999536723668853 hm5C_site_20232 DeepMRMD:1;iRNA_m5C:0.999536723668853 20233 chr19 10812884 10812884 1 + G C CESC 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGACA < 41bp 1 0.181239987484996 1 0.04639932513237 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812884 nonsynonymous SNV 0.815 0 40 hm5C_associated_SNPs_18944 0 0 1 0 2 Ribosome 1 0.500231643983374 1 0.999536712033251 hm5C_site_20233 DeepMRMD:1;iRNA_m5C:0.999536712033251 20234 chr17 37360887 37360887 1 + G A CESC 37360876 + 37360856 37360896 41 GGAGATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGA GGAGATCATCAAGACTTTATCCAAGGAGGAAAAGACCAAGA < 41bp 1 0.49490170672895 1 0.807858347892761 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360876 chr17:37360887 nonsynonymous SNV 0.997 3 32 hm5C_associated_SNPs_18945 0 0 1 0 0 chromatin 1 0.500231643921092 0.384283304214478 0.999536712157815 hm5C_site_20234 DeepMRMD:0.384283304214478;iRNA_m5C:0.999536712157815 20235 chr13 76414531 76414531 1 + C T CESC 76414530 + 76414510 76414550 41 CTCTGATAACTGGTTAGCTTCCAGTTCCAACCATCAGTGCC CTCTGATAACTGGTTAGCTTCTAGTTCCAACCATCAGTGCC < 41bp 1 0.432087844721195 1 0.156889468431473 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76414530 chr13:76414531 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_18946 0 0 1 0 1 Cytosol 1 0.500231237050862 1 0.999537525898276 hm5C_site_20235 DeepMRMD:1;iRNA_m5C:0.999537525898276 20236 chr2 173334029 173334029 1 + C T CESC 173334009 + 173333989 173334029 41 GTGATGGGCGATTGAGAGGCCATGAGAAATTTGGCTCTTGC GTGATGGGCGATTGAGAGGCCATGAGAAATTTGGCTCTTGT < 41bp 1 0.540000438950351 1 0.437431335449219 experiment 0.919999122099298 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173334009 chr2:173334029 synonymous SNV . 0 41 hm5C_associated_SNPs_18947 0 0 1 0 1 Nucleus 1 0.500231643877851 1 0.999536712244297 hm5C_site_20236 DeepMRMD:1;iRNA_m5C:0.999536712244297 20237 chr3 178947162 178947162 1 + G C CESC 178947150 + 178947130 178947170 41 ACTATTATGCAAATTCAGTGCAAAGGCGGCTTGAAAGGTGC ACTATTATGCAAATTCAGTGCAAAGGCGGCTTCAAAGGTGC < 41bp 1 0.465004513127981 1 0.224244803190231 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947150 chr3:178947162 nonsynonymous SNV 0.970 2 33 hm5C_associated_SNPs_18949 0 0 0 0 1 Ribosome 1 0.500231643583281 1 0.999536712833438 hm5C_site_20237 DeepMRMD:1;iRNA_m5C:0.999536712833438 20238 chr4 1730411 1730411 1 + G A CESC 1730416 + 1730396 1730436 41 AAGTCTGGTTGCAGTGAGGCCCAGCCCCCAGAAAGCCCTGA AAGTCTGGTTGCAGTAAGGCCCAGCCCCCAGAAAGCCCTGA < 41bp 1 0.0875399966942206 1 0.330653071403503 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1730416 chr4:1730411 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_18950 0 0 1 0 0 Cytosol 1 0.500231643921108 1 0.999536712157785 hm5C_site_20238 DeepMRMD:1;iRNA_m5C:0.999536712157785 20239 chr13 113729377 113729377 1 + C T CESC 113729386 + 113729366 113729406 41 AACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA AACAAGCACTATGCGGTAGACTCCATCCGCCCAAAGTGCCA < 41bp 1 0.648374047668475 1 0.867423892021179 experiment 0.703251904663051 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113729386 chr13:113729377 synonymous SNV . 0 12 hm5C_associated_SNPs_18951 0 0 1 0 1 Cytosol 1 0.500231647916944 0.265152215957642 0.999536704166112 hm5C_site_20239 DeepMRMD:0.265152215957642;iRNA_m5C:0.999536704166112 20240 chr1 171535871 171535871 1 + C T CESC 171535864 + 171535844 171535884 41 ACAAGAGAAACCAAGCCCAGCTACAGTCAGAAGCACAGATC ACAAGAGAAACCAAGCCCAGCTACAGTTAGAAGCACAGATC < 41bp 1 0.439081930464867 1 0.514618515968323 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171535864 chr1:171535871 synonymous SNV . 0 28 hm5C_associated_SNPs_18952 0 0 1 0 0 Cytosol 1 0.500231643920802 0.970762968063354 0.999536712158396 hm5C_site_20240 DeepMRMD:0.970762968063354;iRNA_m5C:0.999536712158396 20241 chr16 29828302 29828302 1 + G A CESC 29828289 + 29828269 29828309 41 CCAGAGCGAAGAGGAGAGATCCGATGAGGAGCCGGAGGCCA CCAGAGCGAAGAGGAGAGATCCGATGAGGAGCCAGAGGCCA < 41bp 1 0.476527953299132 1 0.145058065652847 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828289 chr16:29828302 synonymous SNV . 0 34 hm5C_associated_SNPs_18953 0 0 1 0 1 Ribosome 1 0.500231643858503 1 0.999536712282993 hm5C_site_20241 DeepMRMD:1;iRNA_m5C:0.999536712282993 20242 chr16 29828302 29828302 1 + G A CESC 29828300 + 29828280 29828320 41 AGGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAA AGGAGAGATCCGATGAGGAGCCAGAGGCCAAAGAAGAGGAA < 41bp 1 0.531813233023981 1 0.456775218248367 experiment 0.936373533952038 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828300 chr16:29828302 synonymous SNV . 0 23 hm5C_associated_SNPs_18954 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20242 DeepMRMD:1;iRNA_m5C:0.999536712157815 20243 chr16 29828302 29828302 1 + G A CESC 29828307 + 29828287 29828327 41 ATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAGGAAA ATCCGATGAGGAGCCAGAGGCCAAAGAAGAGGAAGAGGAAA < 41bp 1 0.385064400959298 1 0.581096827983856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828307 chr16:29828302 synonymous SNV . 0 16 hm5C_associated_SNPs_18956 0 0 1 0 1 Ribosome 1 0.500231651614604 0.837806344032288 0.999536696770791 hm5C_site_20243 DeepMRMD:0.837806344032288;iRNA_m5C:0.999536696770791 20244 chr16 30779676 30779676 1 + C T CESC 30779681 + 30779661 30779701 41 CAGGGCCCTTCCTCCCGGGGCCGAGAACCTGAGGCCAGGCC CAGGGCCCTTCCTCCTGGGGCCGAGAACCTGAGGCCAGGCC < 41bp 1 0.166787686439641 1 0.165430068969727 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30779681 chr16:30779676 nonsynonymous SNV 0.954 4 16 hm5C_associated_SNPs_18958 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20244 DeepMRMD:1;iRNA_m5C:0.999536712157815 20245 chr11 309130 309130 1 + A G CESC 309126 + 309106 309146 41 ATCTTCATGACCATTCTGCTCATCATCATCCCAGTGTTGGT ATCTTCATGACCATTCTGCTCATCGTCATCCCAGTGTTGGT < 41bp 1 0.318748798640032 1 0.0223671197891235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFITM2 ENSG00000185201 CDS Human protein_coding chr11:309126 chr11:309130 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_18959 0 0 1 0 0 Endoplasmic reticulum 1 0.5002316444909 1 0.9995367110182 hm5C_site_20245 DeepMRMD:1;iRNA_m5C:0.9995367110182 20246 chr1 6505917 6505917 1 + A G CESC 6505928 + 6505908 6505948 41 GCCTCCTGTAGGACCACAGGCAGCTGACATCTACATGCAGA GCCTCCTGTGGGACCACAGGCAGCTGACATCTACATGCAGA < 41bp 1 0.363882265794504 1 0.531965255737305 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESPN ENSG00000187017 CDS Human protein_coding chr1:6505928 chr1:6505917 synonymous SNV . 0 10 hm5C_associated_SNPs_18960 0 0 1 0 1 Ribosome 1 0.500231643677978 0.93606948852539 0.999536712644044 hm5C_site_20246 DeepMRMD:0.93606948852539;iRNA_m5C:0.999536712644044 20247 chr20 47896949 47896949 1 + G C CESC 47896942 + 47896922 47896962 41 GCCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG GCCAGTTTCTGTCTGATATGCCAGCTTCAGCAGCTCCTTTG < 41bp 1 0.219573916804536 1 0.136506855487823 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD12B ENSG00000177410 ncRNA_intronic Human antisense chr20:47896942 chr20:47896949 . . 0 28 hm5C_associated_SNPs_18961 0 0 1 0 0 unknown 1 0.500228652772129 1 0.999542694455742 hm5C_site_20247 DeepMRMD:1;iRNA_m5C:0.999542694455742 20248 chr19 50753910 50753910 1 + C T CESC 50753921 + 50753901 50753941 41 CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCGGG CTGCGGGATTAGGCCGACTTCAGTGTTCTCCACTACGCGGG < 41bp 1 0.669129537810887 1 0.621539950370789 experiment 0.661740924378226 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753921 chr19:50753910 stopgain 0.999 0 10 hm5C_associated_SNPs_18963 0 0 0 0 1 cytosol 1 0.500231643921092 0.756920099258422 0.999536712157815 hm5C_site_20248 DeepMRMD:0.756920099258422;iRNA_m5C:0.999536712157815 20249 chrX 47063090 47063090 1 + G A CESC 47063072 + 47063052 47063092 41 CAAATCTGAATCGACAGTTTCTTTTCCGGCCCTGGGATGTC CAAATCTGAATCGACAGTTTCTTTTCCGGCCCTGGGATATC < 41bp 1 0.0335875435124333 1 0.0119623839855194 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47063072 chrX:47063090 nonsynonymous SNV 0.999 1 39 hm5C_associated_SNPs_18964 0 0 1 0 1 Nucleus 1 0.500231646167855 1 0.99953670766429 hm5C_site_20249 DeepMRMD:1;iRNA_m5C:0.99953670766429 20250 chr1 201970613 201970613 1 + C G CESC 201970604 + 201970584 201970624 41 GGTGATCAGGATCAGTTTGACAGTTTTCTCAAGGTATAGTC GGTGATCAGGATCAGTTTGACAGTTTTCTGAAGGTATAGTC < 41bp 1 0.41875779561551 1 0.143868148326874 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201970604 chr1:201970613 synonymous SNV . 0 30 hm5C_associated_SNPs_18966 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_20250 DeepMRMD:1;iRNA_m5C:0.999536712157818 20251 chr11 46403634 46403634 1 + C A CESC 46403637 + 46403617 46403657 41 CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCT CGAGGCTTCCTCCTCCTAACCCTCCTCGCCCTGCTGGCGCT < 41bp 1 0.0729340471761978 1 0.131347745656967 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403637 chr11:46403634 synonymous SNV . 0 18 hm5C_associated_SNPs_18967 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20251 DeepMRMD:1;iRNA_m5C:0.999536712157815 20252 chr11 46403634 46403634 1 + C A CESC 46403638 + 46403618 46403658 41 GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC GAGGCTTCCTCCTCCTAACCCTCCTCGCCCTGCTGGCGCTC < 41bp 1 0.506667173844755 1 0.554145395755768 experiment 0.986665652310489 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403638 chr11:46403634 synonymous SNV . 0 17 hm5C_associated_SNPs_18968 0 0 1 0 2 Ribosome 1 0.500231643921093 0.891709208488464 0.999536712157815 hm5C_site_20252 DeepMRMD:0.891709208488464;iRNA_m5C:0.999536712157815 20253 chr11 46403634 46403634 1 + C A CESC 46403643 + 46403623 46403663 41 TTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC TTCCTCCTCCTAACCCTCCTCGCCCTGCTGGCGCTCACCTC < 41bp 1 0.526895882647763 1 0.700423359870911 experiment 0.946208234704473 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403643 chr11:46403634 synonymous SNV . 0 12 hm5C_associated_SNPs_18969 0 0 1 0 2 Ribosome 1 0.500231643921092 0.599153280258178 0.999536712157815 hm5C_site_20253 DeepMRMD:0.599153280258178;iRNA_m5C:0.999536712157815 20254 chr19 49644755 49644755 1 + G A CESC 49644738 + 49644718 49644758 41 GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAG GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCAAAG < 41bp 1 0.198699881957287 1 0.267313539981842 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644738 chr19:49644755 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_18970 0 0 0 0 2 Cytosol 1 0.500231643933534 1 0.999536712132932 hm5C_site_20254 DeepMRMD:1;iRNA_m5C:0.999536712132932 20255 chr4 79420917 79420917 1 + A C CESC 79420912 + 79420892 79420932 41 GAAGAAGCTGCATACCAAGTCCGGGAACCCGCAGGCCCAGA GAAGAAGCTGCATACCAAGTCCGGGCACCCGCAGGCCCAGA < 41bp 1 0.18943849298484 1 0.593769907951355 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79420912 chr4:79420917 nonsynonymous SNV 0.934 3 26 hm5C_associated_SNPs_18971 0 0 1 0 1 Nucleus 1 0.500231643921092 0.81246018409729 0.999536712157815 hm5C_site_20255 DeepMRMD:0.81246018409729;iRNA_m5C:0.999536712157815 20256 chr20 33764025 33764025 1 + G C CESC 33764041 + 33764021 33764061 41 TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG TCTACAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG < 41bp 1 0.651389513443758 1 0.852312684059143 experiment 0.697220973112485 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PROCR ENSG00000101000 CDS Human protein_coding chr20:33764041 chr20:33764025 nonsynonymous SNV 0.439 0 5 hm5C_associated_SNPs_18972 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921584 0.295374631881714 0.999536712156831 hm5C_site_20256 DeepMRMD:0.295374631881714;iRNA_m5C:0.999536712156831 20257 chr1 12027073 12027073 1 + C T CESC 12027067 + 12027047 12027087 41 TGCCCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC TGCCCGGATGTCTATTGGTTCCCCATTTTCACGGAGGTGGC < 41bp 1 0.556278100120901 1 0.0671496689319611 experiment 0.887443799758198 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027067 chr1:12027073 synonymous SNV . 0 27 hm5C_associated_SNPs_18973 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20257 DeepMRMD:1;iRNA_m5C:0.999536712157815 20258 chr1 12027073 12027073 1 + C T CESC 12027087 + 12027067 12027107 41 CCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG CCCCATTTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG < 41bp 1 0.18632275814015 1 0.0786432921886444 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027087 chr1:12027073 synonymous SNV . 0 7 hm5C_associated_SNPs_18974 0 0 1 0 2 Nucleus 1 0.500231643920942 1 0.999536712158116 hm5C_site_20258 DeepMRMD:1;iRNA_m5C:0.999536712158116 20259 chr22 38021921 38021921 1 + C T CESC 38021903 + 38021883 38021923 41 CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTTAG < 41bp 1 0.629446147063209 1 0.075468510389328 experiment 0.741107705873582 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021903 chr22:38021921 nonsynonymous SNV 0.986 1 39 hm5C_associated_SNPs_18975 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_20259 DeepMRMD:1;iRNA_m5C:0.999536712157815 20260 chrX 70516458 70516458 1 + G C CESC 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATCAT < 41bp 1 0.124023258609763 1 0.0787816643714905 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516458 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_18976 0 0 1 0 2 Nucleus 1 0.500231453720883 1 0.999537092558234 hm5C_site_20260 DeepMRMD:1;iRNA_m5C:0.999537092558234 20261 chr12 4459046 4459046 1 + C G CESC 4459031 + 4459011 4459051 41 CAAATTTTGCAAAGATATGACGGTAAAGTATGACTCAAGAC CAAATTTTGCAAAGATATGACGGTAAAGTATGACTGAAGAC < 41bp 1 0.427050986312646 1 0.385828256607056 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TIGAR ENSG00000078237 CDS Human protein_coding chr12:4459031 chr12:4459046 stopgain 0.720 0 36 hm5C_associated_SNPs_18977 0 0 1 0 1 Nucleus 1 0.500231652704648 1 0.999536694590704 hm5C_site_20261 DeepMRMD:1;iRNA_m5C:0.999536694590704 20262 chr12 22811985 22811985 1 + C T CESC 22811993 + 22811973 22812013 41 ATCCATGCTATTCATGCACACAATGGCTGGATCCCCAAATC ATCCATGCTATTTATGCACACAATGGCTGGATCCCCAAATC < 41bp 1 0.416968829746923 1 0.241540610790253 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22811993 chr12:22811985 nonsynonymous SNV 0.997 3 13 hm5C_associated_SNPs_18978 0 0 1 0 1 Ribosome 1 0.500231643919332 1 0.999536712161336 hm5C_site_20262 DeepMRMD:1;iRNA_m5C:0.999536712161336 20263 chr11 65830913 65830913 1 + G A CESC 65830898 + 65830878 65830918 41 CTGAGGAAGAAGAGATTGATCGGACCCCTTGGGGGGAACTG CTGAGGAAGAAGAGATTGATCGGACCCCTTGGGGGAAACTG < 41bp 1 0.389863722799389 1 0.41365322470665 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65830898 chr11:65830913 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_18979 0 0 1 0 1 Nucleus 1 0.50023164706034 1 0.99953670587932 hm5C_site_20263 DeepMRMD:1;iRNA_m5C:0.99953670587932 20264 chr11 65830913 65830913 1 + G A CESC 65830902 + 65830882 65830922 41 GGAAGAAGAGATTGATCGGACCCCTTGGGGGGAACTGGAAC GGAAGAAGAGATTGATCGGACCCCTTGGGGGAAACTGGAAC < 41bp 1 0.197388592958821 1 0.148360282182693 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65830902 chr11:65830913 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_18980 0 0 1 0 1 Nucleus 1 0.500233479988612 1 0.999533040022777 hm5C_site_20264 DeepMRMD:1;iRNA_m5C:0.999533040022777 20265 chr11 65830913 65830913 1 + G A CESC 65830903 + 65830883 65830923 41 GAAGAAGAGATTGATCGGACCCCTTGGGGGGAACTGGAACC GAAGAAGAGATTGATCGGACCCCTTGGGGGAAACTGGAACC < 41bp 1 0.0715280073377103 1 0.210121423006058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65830903 chr11:65830913 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_18981 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20265 DeepMRMD:1;iRNA_m5C:0.999536712157815 20266 chr11 65830913 65830913 1 + G A CESC 65830905 + 65830885 65830925 41 AGAAGAGATTGATCGGACCCCTTGGGGGGAACTGGAACCAT AGAAGAGATTGATCGGACCCCTTGGGGGAAACTGGAACCAT < 41bp 1 0.427509903137906 1 0.254217267036438 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65830905 chr11:65830913 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_18982 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20266 DeepMRMD:1;iRNA_m5C:0.999536712157815 20267 chr11 65830913 65830913 1 + G A CESC 65830926 + 65830906 65830946 41 TTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAG TTGGGGGAAACTGGAACCATCTGATGAAGAATCCTCAGAAG < 41bp 1 0.579631873753726 1 0.731970369815826 experiment 0.840736252492549 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65830926 chr11:65830913 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_18983 0 0 1 0 1 Nucleus 1 0.500231643921092 0.536059260368348 0.999536712157815 hm5C_site_20267 DeepMRMD:0.536059260368348;iRNA_m5C:0.999536712157815 20268 chr11 65270585 65270585 1 + C T CESC 65270567 + 65270547 65270587 41 TGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAG TGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTTAG < 41bp 1 0.266087261974874 1 0.112396895885468 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270567 chr11:65270585 . . 0 39 hm5C_associated_SNPs_18984 0 0 1 0 0 unknown 1 0.500231208485491 1 0.999537583029019 hm5C_site_20268 DeepMRMD:1;iRNA_m5C:0.999537583029019 20269 chr20 60962962 60962962 1 + C T CESC 60962981 + 60962961 60963001 41 TCGTAGGATGGTGAGTGTTTCCCTGGGCTTTGCTCATCACT TTGTAGGATGGTGAGTGTTTCCCTGGGCTTTGCTCATCACT < 41bp 1 0.269705185472068 1 0.188519328832626 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60962981 chr20:60962962 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_18985 0 0 1 0 2 Cytosol 1 0.500231597918816 1 0.999536804162369 hm5C_site_20269 DeepMRMD:1;iRNA_m5C:0.999536804162369 20270 chr9 124534964 124534964 1 + C T CESC 124534965 + 124534945 124534985 41 TCACAAGGTCCTCCGGGGTCCAGCCCTCACCTGCCCGCAGC TCACAAGGTCCTCCGGGGTTCAGCCCTCACCTGCCCGCAGC < 41bp 1 0.312539889601324 1 0.172138780355453 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124534965 chr9:124534964 synonymous SNV . 0 20 hm5C_associated_SNPs_18987 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20270 DeepMRMD:1;iRNA_m5C:0.999536712157815 20271 chr16 67917564 67917564 1 + C T CESC 67917568 + 67917548 67917588 41 ACCCTGCCCGCTCTCCCAGCCTGTGCTCCTTTCCCTCATCC ACCCTGCCCGCTCTCCTAGCCTGTGCTCCTTTCCCTCATCC < 41bp 1 0.377412122548851 1 0.184064865112305 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917568 chr16:67917564 stopgain 0.997 1 17 hm5C_associated_SNPs_18988 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20271 DeepMRMD:1;iRNA_m5C:0.999536712157815 20272 chr12 56495513 56495513 1 + C A CESC 56495521 + 56495501 56495541 41 CTCAGTGCCTCTCTGGGCAGCACACAGAGTTGCCCACTCCA CTCAGTGCCTCTATGGGCAGCACACAGAGTTGCCCACTCCA < 41bp 1 0.135216864081503 1 0.0694328844547272 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56495521 chr12:56495513 nonsynonymous SNV 0.996 3 13 hm5C_associated_SNPs_18989 0 0 1 0 0 Cytosol 1 0.500231643918397 1 0.999536712163206 hm5C_site_20272 DeepMRMD:1;iRNA_m5C:0.999536712163206 20273 chr16 55527078 55527078 1 + C G CESC 55527074 + 55527054 55527094 41 CAGGTGTTCTCCCCAGGGGCCTCTCCTGACATTGACCTTGG CAGGTGTTCTCCCCAGGGGCCTCTGCTGACATTGACCTTGG < 41bp 1 0.253752260012104 1 0.10796594619751 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55527074 chr16:55527078 nonsynonymous SNV 0.930 0 25 hm5C_associated_SNPs_18990 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20273 DeepMRMD:1;iRNA_m5C:0.999536712157815 20274 chr12 52695763 52695763 1 + G C CESC 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA CCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA < 41bp 1 0.40910690308035 1 0.150015950202942 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695763 synonymous SNV . 0 1 hm5C_associated_SNPs_18991 0 0 0 0 1 nucleus 1 0.500231643935271 1 0.999536712129458 hm5C_site_20274 DeepMRMD:1;iRNA_m5C:0.999536712129458 20275 chr1 2116133 2116133 1 + G A CESC 2116142 - 2116122 2116162 41 GGGACCCGCACCCAGTGGGACTCACTCATCGTCTGGGGTCA GGGACCCGCACCCAGTGGGACTCACTCATTGTCTGGGGTCA < 41bp 1 0.153646584742794 1 0.0405192971229553 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2116142 chr1:2116133 nonsynonymous SNV 0.695 1 30 hm5C_associated_SNPs_18992 0 0 1 0 0 Ribosome 1 0.500281917752231 1 0.999436164495539 hm5C_site_20275 DeepMRMD:1;iRNA_m5C:0.999436164495539 20276 chr1 82372833 82372833 1 + G A CESC 82372824 + 82372804 82372844 41 TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGT TTGAGAGCGCTAACTATGGTCGGACGGATAACAAGATTTGT < 41bp 1 0.270673629203676 1 0.36276775598526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82372824 chr1:82372833 nonsynonymous SNV 0.998 2 30 hm5C_associated_SNPs_18993 0 0 1 0 1 cytosol 1 0.500232138258485 1 0.99953572348303 hm5C_site_20276 DeepMRMD:1;iRNA_m5C:0.99953572348303 20277 chr11 65780823 65780823 1 + C T CESC 65780832 + 65780812 65780852 41 CTTGTGGTTCCCTGGCAGAACTCCTCTCAGCTCCTAAAGCA CTTGTGGTTCCTTGGCAGAACTCCTCTCAGCTCCTAAAGCA < 41bp 1 0.394533465413283 1 0.169637233018875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CST6 ENSG00000175315 CDS Human protein_coding chr11:65780832 chr11:65780823 synonymous SNV . 0 12 hm5C_associated_SNPs_18994 0 0 0 0 1 Cytosol 1 0.500233615492476 1 0.999532769015048 hm5C_site_20277 DeepMRMD:1;iRNA_m5C:0.999532769015048 20278 chr16 28844674 28844674 1 + G A CESC 28844666 + 28844646 28844686 41 AGAAGACAAAGATGAGGGCCCTGTTGCTGAGTGAGTGGAGC AGAAGACAAAGATGAGGGCCCTGTTGCTAAGTGAGTGGAGC < 41bp 1 0.188018526174214 1 0.130511730909348 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28844666 chr16:28844674 nonsynonymous SNV 0.985 2 29 hm5C_associated_SNPs_18995 0 0 1 0 0 Cytosol 1 0.500231643920126 1 0.999536712159748 hm5C_site_20278 DeepMRMD:1;iRNA_m5C:0.999536712159748 20279 chr7 149430667 149430667 1 + G A CESC 149430657 + 149430637 149430677 41 ATGGCCCTGGTCACAGACATCTGCCCTACTGGAGGCAGAAG ATGGCCCTGGTCACAGACATCTGCCCTACTAGAGGCAGAAG < 41bp 1 0.287098334218343 1 0.178250312805176 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149430657 chr7:149430667 stopgain 0.990 0 31 hm5C_associated_SNPs_18997 0 0 0 0 0 Cytosol 1 0.500231643933311 1 0.999536712133378 hm5C_site_20279 DeepMRMD:1;iRNA_m5C:0.999536712133378 20280 chr12 56495503 56495503 1 + C T CESC 56495521 + 56495501 56495541 41 CTCAGTGCCTCTCTGGGCAGCACACAGAGTTGCCCACTCCA CTTAGTGCCTCTCTGGGCAGCACACAGAGTTGCCCACTCCA < 41bp 1 0.175576415166951 1 0.107623428106308 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56495521 chr12:56495503 synonymous SNV . 0 3 hm5C_associated_SNPs_18998 0 0 1 0 0 Cytosol 1 0.500231645542883 1 0.999536708914234 hm5C_site_20280 DeepMRMD:1;iRNA_m5C:0.999536708914234 20281 chr1 44878352 44878352 1 + G A CESC 44878350 + 44878330 44878370 41 TGCTGTCTCTGGCCTCATTTCTGATCGGGAAGCCTCATCTA TGCTGTCTCTGGCCTCATTTCTAATCGGGAAGCCTCATCTA < 41bp 1 0.358260324961922 1 0.6260666847229 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878350 chr1:44878352 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_18999 0 0 1 0 1 Ribosome 1 0.500231643921092 0.7478666305542 0.999536712157815 hm5C_site_20281 DeepMRMD:0.7478666305542;iRNA_m5C:0.999536712157815 20282 chr6 27101034 27101034 1 + G A CESC 27101032 + 27101012 27101052 41 GGTGCTGGAGTACCTGACCGCCGAGATCCTGGAACTGGCGG GGTGCTGGAGTACCTGACCGCCAAGATCCTGGAACTGGCGG < 41bp 1 0.441502164318343 1 0.47037598490715 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101032 chr6:27101034 nonsynonymous SNV 0.985 2 23 hm5C_associated_SNPs_19000 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20282 DeepMRMD:1;iRNA_m5C:0.999536712157815 20283 chr6 27101034 27101034 1 + G A CESC 27101054 + 27101034 27101074 41 GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACAA AAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACAA < 41bp 1 0.546661413160059 1 0.540981650352478 experiment 0.906677173679881 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101054 chr6:27101034 nonsynonymous SNV 0.985 2 1 hm5C_associated_SNPs_19001 0 0 1 0 0 Ribosome 1 0.500231643921092 0.918036699295044 0.999536712157815 hm5C_site_20283 DeepMRMD:0.918036699295044;iRNA_m5C:0.999536712157815 20284 chr1 44878392 44878392 1 + G A CESC 44878373 + 44878353 44878393 41 ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAAA < 41bp 1 0.492423395146936 1 0.165378391742706 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878373 chr1:44878392 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_19002 0 0 1 0 1 Ribosome 1 0.500231643921095 1 0.999536712157811 hm5C_site_20284 DeepMRMD:1;iRNA_m5C:0.999536712157811 20285 chr16 1889330 1889330 1 + G A CESC 1889321 - 1889301 1889341 41 TGCTGATTGATCTGACTGATCACACAGGCACCCTTCATTCC TGCTGATTGATTTGACTGATCACACAGGCACCCTTCATTCC < 41bp 1 0.471848895907267 1 0.0292732119560242 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human protein_coding chr16:1889321 chr16:1889330 synonymous SNV . 0 12 hm5C_associated_SNPs_19004 0 0 1 0 1 chromatin 1 0.50023163608307 1 0.999536727833859 hm5C_site_20285 DeepMRMD:1;iRNA_m5C:0.999536727833859 20286 chr16 1889330 1889330 1 + G A CESC 1889342 + 1889322 1889362 41 ATCAGTCAGATCAATCAGCACATGGAAACTGAGAAAGACAG ATCAGTCAAATCAATCAGCACATGGAAACTGAGAAAGACAG < 41bp 1 0.44663081377145 1 0.149183601140976 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human protein_coding chr16:1889342 chr16:1889330 synonymous SNV . 0 9 hm5C_associated_SNPs_19005 0 0 0 0 1 chromatin 1 0.500231469949916 1 0.999537060100169 hm5C_site_20286 DeepMRMD:1;iRNA_m5C:0.999537060100169 20287 chr11 77921400 77921400 1 + C A CESC 77921407 + 77921387 77921427 41 TCCCCCTGCTGCTCCGCCTGCCACTGGCTGGTGGCCGTGGC TCCCCCTGCTGCTACGCCTGCCACTGGCTGGTGGCCGTGGC < 41bp 1 0.0934366779897433 1 0.126810669898987 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP35 ENSG00000118369 CDS Human protein_coding chr11:77921407 chr11:77921400 synonymous SNV . 0 14 hm5C_associated_SNPs_19006 0 0 1 0 0 nucleolus 1 0.500231643921827 1 0.999536712156346 hm5C_site_20287 DeepMRMD:1;iRNA_m5C:0.999536712156346 20288 chr16 57254652 57254652 1 + G A CESC 57254661 + 57254641 57254681 41 CAGTTTTAAAAGAAGGTAGACAGCTGACCTATGAGAAAGTG CAGTTTTAAAAAAAGGTAGACAGCTGACCTATGAGAAAGTG < 41bp 1 0.236212455100597 1 0.54911482334137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57254661 chr16:57254652 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_19007 0 0 1 0 1 Ribosome 1 0.500231643921092 0.90177035331726 0.999536712157815 hm5C_site_20288 DeepMRMD:0.90177035331726;iRNA_m5C:0.999536712157815 20289 chr16 2514077 2514077 1 + G A CESC 2514057 + 2514037 2514077 41 CAGCGGTGGCGGAACAGCCACCAAGACCATGTCCTGTGGGG CAGCGGTGGCGGAACAGCCACCAAGACCATGTCCTGTGGGA < 41bp 1 0.220695551199733 1 0.346855729818344 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514057 chr16:2514077 synonymous SNV . 0 41 hm5C_associated_SNPs_19008 0 0 0 0 1 Ribosome 1 0.500231644564016 1 0.999536710871967 hm5C_site_20289 DeepMRMD:1;iRNA_m5C:0.999536710871967 20290 chr17 28754474 28754474 1 + G C CESC 28754477 + 28754457 28754497 41 TGAACCGAAATTTCCCAGACCAGTTTGTTCAGATCACAGAT TGAACCGAAATTTCCCACACCAGTTTGTTCAGATCACAGAT < 41bp 1 0.108981431040491 1 0.0663243234157562 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28754477 chr17:28754474 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_19009 0 0 0 0 1 Nucleus 1 0.500231643895777 1 0.999536712208446 hm5C_site_20290 DeepMRMD:1;iRNA_m5C:0.999536712208446 20291 chr19 13049556 13049556 1 + C G CESC 13049544 + 13049524 13049564 41 CTCCTCGGCCTGGCCGTCGCCGAGCCTGCCGTCTACTTCAA CTCCTCGGCCTGGCCGTCGCCGAGCCTGCCGTGTACTTCAA < 41bp 1 0.651205652616771 1 0.738030731678009 experiment 0.697588694766458 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049544 chr19:13049556 synonymous SNV . 0 33 hm5C_associated_SNPs_19010 0 0 1 0 1 Ribosome 1 0.50023164421437 0.523938536643982 0.999536711571259 hm5C_site_20291 DeepMRMD:0.523938536643982;iRNA_m5C:0.999536711571259 20292 chr19 13049556 13049556 1 + C G CESC 13049553 + 13049533 13049573 41 CTGGCCGTCGCCGAGCCTGCCGTCTACTTCAAGGAGCAGTT CTGGCCGTCGCCGAGCCTGCCGTGTACTTCAAGGAGCAGTT < 41bp 1 0.400011383584616 1 0.110072493553162 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049553 chr19:13049556 synonymous SNV . 0 24 hm5C_associated_SNPs_19011 0 0 1 0 1 Ribosome 1 0.500231643642075 1 0.99953671271585 hm5C_site_20292 DeepMRMD:1;iRNA_m5C:0.99953671271585 20293 chr9 130164919 130164919 1 + G A CESC 130164924 + 130164904 130164944 41 ATGTGCTTCATGCCCGAGACCCCGCGCTTCCTGCTGACTCA ATGTGCTTCATGCCCAAGACCCCGCGCTTCCTGCTGACTCA < 41bp 1 0.279610699956999 1 0.0545880496501923 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A8 ENSG00000136856 CDS Human protein_coding chr9:130164924 chr9:130164919 nonsynonymous SNV 0.998 3 16 hm5C_associated_SNPs_19012 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164638267 1 0.99953670723466 hm5C_site_20293 DeepMRMD:1;iRNA_m5C:0.99953670723466 20294 chr12 6941065 6941065 1 + G C CESC 6941063 + 6941043 6941083 41 GCCATGGAGCACCTGGGGACCAGCTTCAAGGATCCTGTGAG GCCATGGAGCACCTGGGGACCACCTTCAAGGATCCTGTGAG < 41bp 1 0.326552832062347 1 0.311273515224457 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6941063 chr12:6941065 nonsynonymous SNV 0.312 0 23 hm5C_associated_SNPs_19013 0 0 1 0 2 membrane 1 0.500231643921074 1 0.999536712157853 hm5C_site_20294 DeepMRMD:1;iRNA_m5C:0.999536712157853 20295 chr9 137706730 137706730 1 + G A CESC 137706719 + 137706699 137706739 41 ACCCCCTGGACCCAAAGGCCCTCCCGGAGATGATGGTCCCA ACCCCCTGGACCCAAAGGCCCTCCCGGAGATAATGGTCCCA < 41bp 1 0.107140598072907 1 0.079817146062851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137706719 chr9:137706730 nonsynonymous SNV 0.398 4 32 hm5C_associated_SNPs_19014 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20295 DeepMRMD:1;iRNA_m5C:0.999536712157815 20296 chr19 14580219 14580219 1 + C G CESC 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTGTTC < 41bp 1 0.0444328466450515 1 0.0737427175045013 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580219 synonymous SNV . 0 38 hm5C_associated_SNPs_19015 0 0 1 0 1 Ribosome 1 0.500231613487615 1 0.999536773024769 hm5C_site_20296 DeepMRMD:1;iRNA_m5C:0.999536773024769 20297 chr19 14580219 14580219 1 + C G CESC 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTGTTCG < 41bp 1 0.0201524676105961 1 0.117114126682281 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580219 synonymous SNV . 0 37 hm5C_associated_SNPs_19016 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20297 DeepMRMD:1;iRNA_m5C:0.999536712157815 20298 chr19 14580219 14580219 1 + C G CESC 14580207 + 14580187 14580227 41 ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG ACCAGTGCGGGACACCCCTTCCTGGTGAACCTGTTCGGCTG < 41bp 1 0.421443428254539 1 0.745142221450806 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580207 chr19:14580219 synonymous SNV . 0 33 hm5C_associated_SNPs_19017 0 0 1 0 1 Ribosome 1 0.500231643921092 0.509715557098388 0.999536712157815 hm5C_site_20298 DeepMRMD:0.509715557098388;iRNA_m5C:0.999536712157815 20299 chrX 57405196 57405196 1 + C A CESC 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTAATGGC < 41bp 1 0.474676463233406 1 0.150585651397705 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405196 synonymous SNV . 0 36 hm5C_associated_SNPs_19018 0 0 0 0 1 nucleus 1 0.50023163970051 1 0.99953672059898 hm5C_site_20299 DeepMRMD:1;iRNA_m5C:0.99953672059898 20300 chr19 13054640 13054640 1 + G T CESC 13054643 + 13054623 13054663 41 GACAAGGAGGATGATGAGGACAAAGATGAGGATGAGGAGGA GACAAGGAGGATGATGATGACAAAGATGAGGATGAGGAGGA < 41bp 1 0.662514669320561 1 0.49016472697258 experiment 0.674970661358878 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054643 chr19:13054640 nonsynonymous SNV 0.028 0 18 hm5C_associated_SNPs_19019 0 0 1 0 0 Ribosome 1 0.500231643921248 1 0.999536712157505 hm5C_site_20300 DeepMRMD:1;iRNA_m5C:0.999536712157505 20301 chr9 7174651 7174651 1 + G A CESC 7174666 + 7174646 7174686 41 TTTAAGAATGAATATGTGGCCGACCCTGTATACCGCACTTT TTTAAAAATGAATATGTGGCCGACCCTGTATACCGCACTTT < 41bp 1 0.125382506180739 1 0.0372592508792877 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4C ENSG00000107077 CDS Human protein_coding chr9:7174666 chr9:7174651 synonymous SNV . 0 6 hm5C_associated_SNPs_19020 0 0 0 0 1 Nucleus 1 0.500231643921041 1 0.999536712157918 hm5C_site_20301 DeepMRMD:1;iRNA_m5C:0.999536712157918 20302 chr19 1272191 1272191 1 + C G CESC 1272179 + 1272159 1272199 41 GTGCTTGCCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCAT GTGCTTGCCCAGAAGAGGCGCATCTGTCCTCTGAGAGCCAT < 41bp 1 0.114249630126508 1 0.11292952299118 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272179 chr19:1272191 nonsynonymous SNV 0.170 0 33 hm5C_associated_SNPs_19021 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20302 DeepMRMD:1;iRNA_m5C:0.999536712157815 20303 chr19 1272191 1272191 1 + C G CESC 1272182 + 1272162 1272202 41 CTTGCCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCATTTC CTTGCCCAGAAGAGGCGCATCTGTCCTCTGAGAGCCATTTC < 41bp 1 0.347227100271054 1 0.0488358736038208 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272182 chr19:1272191 nonsynonymous SNV 0.170 0 30 hm5C_associated_SNPs_19022 0 0 1 0 0 Ribosome 1 0.500231635078023 1 0.999536729843954 hm5C_site_20303 DeepMRMD:1;iRNA_m5C:0.999536729843954 20304 chr1 35824609 35824609 1 + C T CESC 35824625 + 35824605 35824645 41 AATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATG AATGTCGAATCAAACAGGATCTGAAAATTCATTGCTGGATG < 41bp 1 0.453302935016521 1 0.335442811250687 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35824625 chr1:35824609 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_19023 0 0 1 0 0 Cytosol 1 0.500231643998126 1 0.999536712003747 hm5C_site_20304 DeepMRMD:1;iRNA_m5C:0.999536712003747 20305 chr19 36227608 36227608 1 + G A CESC 36227620 + 36227600 36227640 41 CGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG CGAGCTCTAAGGAAGAGCCTCCATCCCCAGATGATAAAGAG < 41bp 1 0.00583525844337153 1 0.0968704223632812 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227620 chr19:36227608 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_19024 0 0 1 0 1 chromatin 1 0.50023164382953 1 0.99953671234094 hm5C_site_20305 DeepMRMD:1;iRNA_m5C:0.99953671234094 20306 chr2 160031609 160031609 1 + G A CESC 160031614 + 160031594 160031634 41 AGCCCCAACTACAGAGCATGCTGAGCCTCCGATCCTGTGTG AGCCCCAACTACAGAACATGCTGAGCCTCCGATCCTGTGTG < 41bp 1 0.496790031674688 1 0.208282828330994 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160031614 chr2:160031609 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_19025 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20306 DeepMRMD:1;iRNA_m5C:0.999536712157815 20307 chr16 29811297 29811297 1 + G A CESC 29811295 + 29811275 29811315 41 CCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGA CCACCAGAGGCAAAGAGAGCCCAAGGCCCTGAGGAAGAGGA < 41bp 1 0.128091912854324 1 0.589030623435974 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811295 chr16:29811297 nonsynonymous SNV 0.953 0 23 hm5C_associated_SNPs_19026 0 0 1 0 2 Cytosol 1 0.500231643921092 0.821938753128052 0.999536712157815 hm5C_site_20307 DeepMRMD:0.821938753128052;iRNA_m5C:0.999536712157815 20308 chr16 29811297 29811297 1 + G A CESC 29811301 + 29811281 29811321 41 GAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGG GAGGCAAAGAGAGCCCAAGGCCCTGAGGAAGAGGAGATCGG < 41bp 1 0.161859056337637 1 0.130485534667969 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811301 chr16:29811297 nonsynonymous SNV 0.953 0 17 hm5C_associated_SNPs_19027 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20308 DeepMRMD:1;iRNA_m5C:0.999536712157815 20309 chr15 91456130 91456130 1 + C T CESC 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCTGTGCTGCG < 41bp 1 0.646862779985419 1 0.886131763458252 experiment 0.706274440029163 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456130 synonymous SNV . 0 33 hm5C_associated_SNPs_19028 0 0 1 1 2 Endoplasmic reticulum 1 0.50023164392109 0.227736473083496 0.999536712157819 hm5C_site_20309 DeepMRMD:0.227736473083496;iRNA_m5C:0.999536712157819 20310 chr9 6498126 6498126 1 + G C CESC 6498113 + 6498093 6498133 41 GTTGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACGGTC GTTGAACCTGCTCCTTGGACCTCTGAAGGAATACAACGGTC < 41bp 1 0.40763841933586 1 0.144914120435715 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498113 chr9:6498126 nonsynonymous SNV 0.998 2 34 hm5C_associated_SNPs_19029 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20310 DeepMRMD:1;iRNA_m5C:0.999536712157815 20311 chr1 171535854 171535854 1 + C A CHOL 171535864 + 171535844 171535884 41 ACAAGAGAAACCAAGCCCAGCTACAGTCAGAAGCACAGATC ACAAGAGAAAACAAGCCCAGCTACAGTCAGAAGCACAGATC < 41bp 1 0.455112770278302 1 0.433194845914841 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171535864 chr1:171535854 nonsynonymous SNV 0.284 0 11 hm5C_associated_SNPs_19031 0 0 1 0 0 Cytosol 1 0.500231573329376 1 0.999536853341249 hm5C_site_20311 DeepMRMD:1;iRNA_m5C:0.999536853341249 20312 chr1 214503534 214503534 1 + C A CHOL 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTACTGTACCCAACGGAAGATAGAAATGACCGGT < 41bp 1 0.618147523133954 1 0.630851745605469 experiment 0.763704953732092 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503534 synonymous SNV . 0 10 hm5C_associated_SNPs_19032 0 0 1 0 2 Ribosome 1 0.500231643914119 0.738296508789062 0.999536712171762 hm5C_site_20312 DeepMRMD:0.738296508789062;iRNA_m5C:0.999536712171762 20313 chr3 184039802 184039802 1 + A T CHOL 184039793 + 184039773 184039813 41 AGCAGGAGAAGCAGGAGAAGCTGAGAGTGAGAAAGGAGGAG AGCAGGAGAAGCAGGAGAAGCTGAGAGTGTGAAAGGAGGAG < 41bp 1 0.506075922816277 1 0.388317376375198 experiment 0.987848154367445 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039793 chr3:184039802 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_19033 0 0 1 0 1 Nucleus 1 0.500231643921069 1 0.999536712157861 hm5C_site_20313 DeepMRMD:1;iRNA_m5C:0.999536712157861 20314 chr17 73738739 73738739 1 + G C CHOL 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAC < 41bp 1 0.125454918081622 1 0.0190183818340302 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738739 nonsynonymous SNV 0.965 1 41 hm5C_associated_SNPs_19034 0 0 0 0 1 Cytosol 1 0.500231643921112 1 0.999536712157775 hm5C_site_20314 DeepMRMD:1;iRNA_m5C:0.999536712157775 20315 chr5 147498034 147498034 1 + A T CHOL 147498044 + 147498024 147498064 41 CAAATGAAAAATGGAAGACTCAGCTGTACTCGGGAGAGTGA CAAATGAAAATTGGAAGACTCAGCTGTACTCGGGAGAGTGA < 41bp 1 0.420332559344689 1 0.319054901599884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498044 chr5:147498034 nonsynonymous SNV 0.908 1 11 hm5C_associated_SNPs_19035 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920302 1 0.999536712159397 hm5C_site_20315 DeepMRMD:1;iRNA_m5C:0.999536712159397 20316 chr11 111933226 111933226 1 + G A CHOL 111933230 + 111933210 111933250 41 TTGCTGAGTTTAGAAAGTACCTTGAAAAACCTATCACTATG TTGCTGAGTTTAGAAAATACCTTGAAAAACCTATCACTATG < 41bp 1 0.65230600874497 1 0.334891527891159 experiment 0.695387982510061 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DLAT ENSG00000150768 CDS Human protein_coding chr11:111933230 chr11:111933226 synonymous SNV . 0 17 hm5C_associated_SNPs_19036 0 0 0 0 1 Cytosol 1 0.500231643726137 1 0.999536712547725 hm5C_site_20316 DeepMRMD:1;iRNA_m5C:0.999536712547725 20317 chr19 12014751 12014751 1 + T C CHOL 12014742 + 12014722 12014762 41 AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAAAA AAAAGTTGGAAAGACCAGAACATTGAATACGAGTACCAAAA < 41bp 1 0.118955717365832 1 0.355690985918045 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014742 chr19:12014751 synonymous SNV . 0 30 hm5C_associated_SNPs_19037 0 0 0 0 2 Nucleus 1 0.500231643921089 1 0.999536712157822 hm5C_site_20317 DeepMRMD:1;iRNA_m5C:0.999536712157822 20318 chr16 23578342 23578342 1 + A C CHOL 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAAACAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC < 41bp 1 0.0628918076735347 1 0.0790891051292419 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578342 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_19038 0 0 1 0 2 Ribosome 1 0.50023164392073 1 0.99953671215854 hm5C_site_20318 DeepMRMD:1;iRNA_m5C:0.99953671215854 20319 chr1 40724003 40724003 1 + C T CHOL 40724018 + 40723998 40724038 41 ATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCT ATCTTTGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCT < 41bp 1 0.217211482818211 1 0.0241536200046539 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40724018 chr1:40724003 synonymous SNV . 0 6 hm5C_associated_SNPs_19039 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157813 hm5C_site_20319 DeepMRMD:1;iRNA_m5C:0.999536712157813 20320 chr19 10941703 10941703 1 + G A CHOL 10941683 + 10941663 10941703 41 CCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCG CCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCA < 41bp 1 0.0606413730427595 1 0.0314130187034607 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941683 chr19:10941703 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_19040 0 0 1 0 2 Nucleus 1 0.500231643963285 1 0.999536712073429 hm5C_site_20320 DeepMRMD:1;iRNA_m5C:0.999536712073429 20321 chr19 10941703 10941703 1 + G A CHOL 10941686 + 10941666 10941706 41 TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGC TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCAAGC < 41bp 1 0.0573751079466254 1 0.0730002820491791 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941686 chr19:10941703 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_19042 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20321 DeepMRMD:1;iRNA_m5C:0.999536712157815 20322 chr19 10941703 10941703 1 + G A CHOL 10941687 + 10941667 10941707 41 GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCC GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCAAGCC < 41bp 1 0.234459438575317 1 0.103074252605438 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941687 chr19:10941703 nonsynonymous SNV 0.999 4 37 hm5C_associated_SNPs_19043 0 0 1 0 2 Nucleus 1 0.500231643944003 1 0.999536712111995 hm5C_site_20322 DeepMRMD:1;iRNA_m5C:0.999536712111995 20323 chr1 42925444 42925444 1 + G C CHOL 42925451 + 42925431 42925471 41 CTAATATCCTTGAGTCACGACAGTCCTTTGTGTTTATTGTA CTAATATCCTTGACTCACGACAGTCCTTTGTGTTTATTGTA < 41bp 1 0.0581687025275854 1 0.0991974174976349 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPCS ENSG00000127125 CDS Human protein_coding chr1:42925451 chr1:42925444 nonsynonymous SNV 0.990 0 14 hm5C_associated_SNPs_19044 0 0 1 0 0 Ribosome 1 0.500231643920217 1 0.999536712159565 hm5C_site_20323 DeepMRMD:1;iRNA_m5C:0.999536712159565 20324 chr10 91177164 91177164 1 + G A CHOL 91177165 + 91177145 91177185 41 AAAAGGCCAAAATAAAGACGCCCTTGAGTGCTTGGAACAAG AAAAGGCCAAAATAAAGACACCCTTGAGTGCTTGGAACAAG < 41bp 1 0.0892266149116488 1 0.0600224137306213 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFIT5 ENSG00000152778 CDS Human protein_coding chr10:91177165 chr10:91177164 nonsynonymous SNV 0.027 5 20 hm5C_associated_SNPs_19045 0 0 1 0 0 exosome 1 0.500231643917135 1 0.99953671216573 hm5C_site_20324 DeepMRMD:1;iRNA_m5C:0.99953671216573 20325 chr19 33581730 33581730 1 + G T CHOL 33581723 + 33581703 33581743 41 TTTGTGTCTTCACGACAGAACAGAGCAGACAAATCTGTTCT TTTGTGTCTTCACGACAGAACAGAGCATACAAATCTGTTCT < 41bp 1 0.375899738186441 1 0.49689045548439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33581723 chr19:33581730 nonsynonymous SNV 0.999 4 28 hm5C_associated_SNPs_19046 0 0 1 0 2 Cytosol 1 0.500213263031878 1 0.999573473936244 hm5C_site_20325 DeepMRMD:1;iRNA_m5C:0.999573473936244 20326 chrX 70516449 70516449 1 + C T CHOL 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCTGTGACTGTGGAGCCCATGGACTAGTTAGATGAT < 41bp 1 0.0873231655848774 1 0.066047340631485 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516449 stopgain 1.000 1 30 hm5C_associated_SNPs_19047 0 0 1 0 2 Nucleus 1 0.500231640887016 1 0.999536718225968 hm5C_site_20326 DeepMRMD:1;iRNA_m5C:0.999536718225968 20327 chr5 71491937 71491937 1 + G T CHOL 71491948 + 71491928 71491968 41 GAGAAGCAGGGAGTAGACGACATTGAAAAATTTGAAGATGA GAGAAGCAGTGAGTAGACGACATTGAAAAATTTGAAGATGA < 41bp 1 0.0838655459964683 1 0.104748487472534 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71491948 chr5:71491937 stopgain 0.946 0 10 hm5C_associated_SNPs_19049 0 0 1 0 0 Cytosol 1 0.50023164050908 1 0.99953671898184 hm5C_site_20327 DeepMRMD:1;iRNA_m5C:0.99953671898184 20328 chr2 32613960 32613960 1 + T C CHOL 32613943 + 32613923 32613963 41 GTGGCGTCCTCAGTGATGGACAGATTGTCTTACCTCTTACC GTGGCGTCCTCAGTGATGGACAGATTGTCTTACCTCTCACC < 41bp 1 0.122480895156573 1 0.774440944194794 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32613943 chr2:32613960 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_19050 0 0 1 0 1 Nucleus 1 0.500232793935556 0.451118111610412 0.999534412128889 hm5C_site_20328 DeepMRMD:0.451118111610412;iRNA_m5C:0.999534412128889 20329 chr19 45162133 45162133 1 + G T CHOL 45162132 + 45162112 45162152 41 TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCACTGT TCTATTGGTCCAAATGTTCCCTTGAGGTCCTTTGGCACTGT < 41bp 1 0.600295259420434 1 0.295389711856842 experiment 0.799409481159131 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162132 chr19:45162133 nonsynonymous SNV 0.005 2 22 hm5C_associated_SNPs_19051 0 0 1 0 1 Ribosome 1 0.500231643909877 1 0.999536712180246 hm5C_site_20329 DeepMRMD:1;iRNA_m5C:0.999536712180246 20330 chr19 45162133 45162133 1 + G T CHOL 45162140 + 45162120 45162160 41 TCCAAATGTTCCCGTGAGGTCCTTTGGCACTGTCATCTGTG TCCAAATGTTCCCTTGAGGTCCTTTGGCACTGTCATCTGTG < 41bp 1 0.0211693660725368 1 0.0224297642707825 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162140 chr19:45162133 nonsynonymous SNV 0.005 2 14 hm5C_associated_SNPs_19052 0 0 1 0 1 Ribosome 1 0.500231643884243 1 0.999536712231515 hm5C_site_20330 DeepMRMD:1;iRNA_m5C:0.999536712231515 20331 chr8 145535402 145535402 1 + A G CHOL 145535406 + 145535386 145535426 41 GCCCCCTCCCCAGCCTACAGCAGCTCCAGCCTCTACGCCCC GCCCCCTCCCCAGCCTGCAGCAGCTCCAGCCTCTACGCCCC < 41bp 1 0.321995630254099 1 0.219299614429474 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535406 chr8:145535402 nonsynonymous SNV 0.993 2 17 hm5C_associated_SNPs_19053 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_20331 DeepMRMD:1;iRNA_m5C:0.999536712157815 20332 chr12 31242081 31242081 1 + G A CHOL 31242078 + 31242058 31242098 41 TCGGCTGGTCTCCCTTGGCTCCCGGCAGGTAAACAGTAGCC TCGGCTGGTCTCCCTTGGCTCCCAGCAGGTAAACAGTAGCC < 41bp 1 0.29517479364466 1 0.110836625099182 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31242078 chr12:31242081 nonsynonymous SNV 0.439 3 24 hm5C_associated_SNPs_19054 1 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20332 DeepMRMD:1;iRNA_m5C:0.999536712157815 Warsaw breakage syndrome Warsaw breakage syndrome 20333 chr12 31242073 31242073 1 + T C CHOL 31242078 + 31242058 31242098 41 TCGGCTGGTCTCCCTTGGCTCCCGGCAGGTAAACAGTAGCC TCGGCTGGTCTCCCTCGGCTCCCGGCAGGTAAACAGTAGCC < 41bp 1 0.466460313823319 1 0.198191732168198 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31242078 chr12:31242073 synonymous SNV . 0 16 hm5C_associated_SNPs_19055 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_20333 DeepMRMD:1;iRNA_m5C:0.999536712157815 20334 chr19 11141508 11141508 1 + G T CHOL 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGGGCTCGTCCTGAACCTCCAGTCGGC < 41bp 1 0.198529373958849 1 0.342818677425385 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141508 nonsynonymous SNV 0.955 5 23 hm5C_associated_SNPs_19057 0 0 1 0 1 Nucleus 1 0.500231643903481 1 0.999536712193038 hm5C_site_20334 DeepMRMD:1;iRNA_m5C:0.999536712193038 20335 chr2 128861520 128861520 1 + A C CHOL 128861524 + 128861504 128861544 41 AGTGAGTTTTTAGCAGAAGACAGTCAAGAGAAATTTTGGAA AGTGAGTTTTTAGCAGCAGACAGTCAAGAGAAATTTTGGAA < 41bp 1 0.0644234461250075 1 0.226362317800522 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128861524 chr2:128861520 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_19058 0 0 1 0 2 Nucleus 1 0.500231645556103 1 0.999536708887793 hm5C_site_20335 DeepMRMD:1;iRNA_m5C:0.999536708887793 20336 chr1 161130441 161130441 1 + C T CHOL 161130429 + 161130409 161130449 41 GGTCCAGCCTGTGGTGTCCACAATGCCCCAGGCCTCTGAGC GGTCCAGCCTGTGGTGTCCACAATGCCCCAGGTCTCTGAGC < 41bp 1 0.670737192576784 1 0.481158852577209 experiment 0.658525614846432 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161130429 chr1:161130441 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_19059 0 0 1 0 1 Cytosol 1 0.500231643920488 1 0.999536712159024 hm5C_site_20336 DeepMRMD:1;iRNA_m5C:0.999536712159024 20337 chr19 49593594 49593594 1 + A G COAD 49593586 + 49593566 49593606 41 CCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG CCTCCAACTCGTGCTGAAACCCGAGAGGGGCGCATGGAGAG < 41bp 1 0.517676634482095 1 0.760877728462219 experiment 0.96464673103581 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593586 chr19:49593594 nonsynonymous SNV 0.998 4 29 hm5C_associated_SNPs_19061 0 0 1 0 2 Nucleus 1 0.500231643968791 0.478244543075562 0.999536712062419 hm5C_site_20337 DeepMRMD:0.478244543075562;iRNA_m5C:0.999536712062419 20338 chr19 49593594 49593594 1 + A G COAD 49593596 + 49593576 49593616 41 GTGCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGT GTGCTGAAACCCGAGAGGGGCGCATGGAGAGGAAAGTATGT < 41bp 1 0.177451414339677 1 0.364840388298035 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593596 chr19:49593594 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_19062 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20338 DeepMRMD:1;iRNA_m5C:0.999536712157815 20339 chr19 49593594 49593594 1 + A G COAD 49593598 + 49593578 49593618 41 GCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGTCA GCTGAAACCCGAGAGGGGCGCATGGAGAGGAAAGTATGTCA < 41bp 1 0.476391077111799 1 0.328505098819733 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593598 chr19:49593594 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_19063 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20339 DeepMRMD:1;iRNA_m5C:0.999536712157815 20340 chr10 43971236 43971236 1 + C A COAD 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGATCAGAGGACCCCGTACAGAGACATGATGCTGG < 41bp 1 0.376734469705026 1 0.235965341329575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971236 nonsynonymous SNV . 0 9 hm5C_associated_SNPs_19064 0 0 0 0 2 exosome 1 0.500250710113733 1 0.999498579772534 hm5C_site_20340 DeepMRMD:1;iRNA_m5C:0.999498579772534 20341 chr16 2816046 2816046 1 + A C COAD 2816031 + 2816011 2816051 41 CAGGAAAGTTCCCGGACCTCCTCTCGACGCCGAAGAGGCCG CAGGAAAGTTCCCGGACCTCCTCTCGACGCCGAAGCGGCCG < 41bp 1 0.148457618172726 1 0.323656916618347 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816031 chr16:2816046 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_19065 0 0 1 0 0 Nucleus 1 0.500231681657336 1 0.999536636685328 hm5C_site_20341 DeepMRMD:1;iRNA_m5C:0.999536636685328 20342 chr16 2816046 2816046 1 + A C COAD 2816050 + 2816030 2816070 41 CCTCTCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACC CCTCTCGACGCCGAAGCGGCCGCTCTCGGACACCCCCAACC < 41bp 1 0.166808983462118 1 0.0862870812416077 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816050 chr16:2816046 nonsynonymous SNV 0.999 3 17 hm5C_associated_SNPs_19066 0 0 1 0 0 Nucleus 1 0.500231637769786 1 0.999536724460428 hm5C_site_20342 DeepMRMD:1;iRNA_m5C:0.999536724460428 20343 chr16 2816046 2816046 1 + A C COAD 2816052 + 2816032 2816072 41 TCTCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACCAG TCTCGACGCCGAAGCGGCCGCTCTCGGACACCCCCAACCAG < 41bp 1 0.208822782407055 1 0.182865709066391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816052 chr16:2816046 nonsynonymous SNV 0.999 3 15 hm5C_associated_SNPs_19067 0 0 1 0 0 Nucleus 1 0.500233974969603 1 0.999532050060794 hm5C_site_20343 DeepMRMD:1;iRNA_m5C:0.999532050060794 20344 chr11 68846030 68846030 1 + G T COAD 68846028 + 68846008 68846048 41 GCCACTACTACTTTGACTACCTGGGGAACCTCATCGCCCTG GCCACTACTACTTTGACTACCTTGGGAACCTCATCGCCCTG < 41bp 1 0.480260768763777 1 0.230260998010635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68846028 chr11:68846030 synonymous SNV . 0 23 hm5C_associated_SNPs_19068 0 0 1 2 2 chromatin 1 0.500231628050323 1 0.999536743899353 hm5C_site_20344 DeepMRMD:1;iRNA_m5C:0.999536743899353 20345 chr17 21731043 21731043 1 + C T COAD 21731040 + 21731020 21731060 41 GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT GATAAAGAAGGCATCCCCCCCGATCAGCAGAGGCTCATCTT < 41bp 1 0.141619686772995 1 0.310296297073364 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731040 chr17:21731043 synonymous SNV . 0 24 hm5C_associated_SNPs_19069 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20345 DeepMRMD:1;iRNA_m5C:0.999536712157815 20346 chr3 14905701 14905701 1 + G A COAD 14905692 + 14905672 14905712 41 TCGGCAGCCCCCAAAGAGGACCTTACGTCGGATGAAGAGCA TCGGCAGCCCCCAAAGAGGACCTTACGTCAGATGAAGAGCA < 41bp 1 0.0273392810782934 1 0.0375505089759827 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FGD5 ENSG00000154783 CDS Human protein_coding chr3:14905692 chr3:14905701 synonymous SNV . 0 30 hm5C_associated_SNPs_19071 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20346 DeepMRMD:1;iRNA_m5C:0.999536712157815 20347 chr19 34292090 34292090 1 + C T COAD 34292109 + 34292089 34292129 41 CCGGCTGTCTCTCACCCGGTCGCCTGTGTCTCCCCTGGCTG CTGGCTGTCTCTCACCCGGTCGCCTGTGTCTCCCCTGGCTG < 41bp 1 0.58129784824804 1 0.0872621834278107 experiment 0.837404303503921 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34292109 chr19:34292090 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_19072 0 0 1 0 1 Cytosol 1 0.500231643921106 1 0.999536712157787 hm5C_site_20347 DeepMRMD:1;iRNA_m5C:0.999536712157787 20348 chr1 154248123 154248123 1 + T C COAD 154248129 + 154248109 154248149 41 CCTCCAGCCCTGGATGATGCCTTTTCCATCCTGGACTTATT CCTCCAGCCCTGGACGATGCCTTTTCCATCCTGGACTTATT < 41bp 1 0.0903345405467035 1 0.0425158441066742 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAX1 ENSG00000143575 CDS Human protein_coding chr1:154248129 chr1:154248123 synonymous SNV . 0 15 hm5C_associated_SNPs_19073 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20348 DeepMRMD:1;iRNA_m5C:0.999536712157815 20349 chr1 109743447 109743447 1 + C T COAD 109743434 + 109743414 109743454 41 GCCAGCAGCTGACAGCTGCGCCATCATGGAAGGCGAGGATG GCCAGCAGCTGACAGCTGCGCCATCATGGAAGGTGAGGATG < 41bp 1 0.0551154574040082 1 0.10423555970192 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109743434 chr1:109743447 synonymous SNV . 0 34 hm5C_associated_SNPs_19074 0 0 0 0 1 exosome 1 0.500231644659779 1 0.999536710680443 hm5C_site_20349 DeepMRMD:1;iRNA_m5C:0.999536710680443 20350 chr8 145139713 145139713 1 + C T COAD 145139712 + 145139692 145139732 41 TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCT TACTTGCTCCCCGGCCTCTCCTGCTTCGTCTCCATCGGCCT < 41bp 1 0.511019540257914 1 0.164278149604797 experiment 0.977960919484173 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139712 chr8:145139713 nonsynonymous SNV 0.990 3 22 hm5C_associated_SNPs_19075 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20350 DeepMRMD:1;iRNA_m5C:0.999536712157815 20351 chr12 123028753 123028753 1 + T C COAD 123028737 + 123028717 123028757 41 AATCAAGTCCAGTTTTATTTCTACTGAAAATTATCATACTC AATCAAGTCCAGTTTTATTTCTACTGAAAATTATCACACTC < 41bp 1 0.337105426438195 1 0.527902483940125 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123028737 chr12:123028753 synonymous SNV . 0 37 hm5C_associated_SNPs_19076 0 0 1 0 2 Nucleus 1 0.500231625974516 0.94419503211975 0.999536748050968 hm5C_site_20351 DeepMRMD:0.94419503211975;iRNA_m5C:0.999536748050968 20352 chr17 57733219 57733219 1 + G A COAD 57733217 + 57733197 57733237 41 TTGATTTTCTTTCTGTAGATCAGTGAAAAGCATGATGTGGT TTGATTTTCTTTCTGTAGATCAATGAAAAGCATGATGTGGT < 41bp 1 0.0476871524344951 1 0.275144845247269 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57733217 chr17:57733219 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_19078 0 0 1 0 1 Nucleus 1 0.500231688929636 1 0.999536622140729 hm5C_site_20352 DeepMRMD:1;iRNA_m5C:0.999536622140729 20353 chr7 142459799 142459799 1 + C T COAD 142459781 + 142459761 142459801 41 CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCAT CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACTAT < 41bp 1 0.672292223144994 1 0.779423236846924 experiment 0.655415553710012 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459781 chr7:142459799 synonymous SNV . 0 39 hm5C_associated_SNPs_19079 0 0 0 0 1 Cytosol 1 0.500231643921092 0.441153526306152 0.999536712157815 hm5C_site_20353 DeepMRMD:0.441153526306152;iRNA_m5C:0.999536712157815 20354 chr7 142459799 142459799 1 + C T COAD 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACTATCTC < 41bp 1 0.553764075511332 1 0.244832932949066 experiment 0.892471848977336 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459799 synonymous SNV . 0 36 hm5C_associated_SNPs_19080 0 0 0 0 1 Cytosol 1 0.500231643921179 1 0.999536712157642 hm5C_site_20354 DeepMRMD:1;iRNA_m5C:0.999536712157642 20355 chr7 142459799 142459799 1 + C T COAD 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTGCAGTAATCAACGCCCGCGTGTCCACTATCTCTC < 41bp 1 0.478744795158668 1 0.106430023908615 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459799 synonymous SNV . 0 34 hm5C_associated_SNPs_19081 0 0 0 0 1 Cytosol 1 0.500231643893104 1 0.999536712213791 hm5C_site_20355 DeepMRMD:1;iRNA_m5C:0.999536712213791 20356 chr7 142459799 142459799 1 + C T COAD 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTGCAGTAATCAACGCCCGCGTGTCCACTATCTCTCT < 41bp 1 0.513074228281448 1 0.136171907186508 experiment 0.973851543437104 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459799 synonymous SNV . 0 33 hm5C_associated_SNPs_19082 0 0 0 0 1 Cytosol 1 0.501173360304943 1 0.997653279390115 hm5C_site_20356 DeepMRMD:1;iRNA_m5C:0.997653279390115 20357 chr7 142459799 142459799 1 + C T COAD 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CGTGCAGTAATCAACGCCCGCGTGTCCACTATCTCTCTGCC < 41bp 1 0.399350174873016 1 0.159793674945831 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459799 synonymous SNV . 0 30 hm5C_associated_SNPs_19084 0 0 0 0 1 Cytosol 1 0.500231643174673 1 0.999536713650654 hm5C_site_20357 DeepMRMD:1;iRNA_m5C:0.999536713650654 20358 chr7 142459799 142459799 1 + C T COAD 142459795 + 142459775 142459815 41 AGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG AGTAATCAACGCCCGCGTGTCCACTATCTCTCTGCCCACCG < 41bp 1 0.432250132111378 1 0.09854456782341 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459795 chr7:142459799 synonymous SNV . 0 25 hm5C_associated_SNPs_19085 0 0 0 0 1 Cytosol 1 0.500231750317419 1 0.999536499365161 hm5C_site_20358 DeepMRMD:1;iRNA_m5C:0.999536499365161 20359 chr7 142459799 142459799 1 + C T COAD 142459798 + 142459778 142459818 41 AATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCC AATCAACGCCCGCGTGTCCACTATCTCTCTGCCCACCGCCC < 41bp 1 0.331545315906767 1 0.0351950228214264 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459798 chr7:142459799 synonymous SNV . 0 22 hm5C_associated_SNPs_19087 0 0 0 0 1 Cytosol 1 0.500231643921086 1 0.999536712157828 hm5C_site_20359 DeepMRMD:1;iRNA_m5C:0.999536712157828 20360 chr7 142459799 142459799 1 + C T COAD 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCCCGCGTGTCCACTATCTCTCTGCCCACCGCCCCTCC < 41bp 1 0.52317271494587 1 0.24093958735466 experiment 0.953654570108261 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459799 synonymous SNV . 0 18 hm5C_associated_SNPs_19088 0 0 0 0 1 Cytosol 1 0.500231643915037 1 0.999536712169927 hm5C_site_20360 DeepMRMD:1;iRNA_m5C:0.999536712169927 20361 chr7 142459799 142459799 1 + C T COAD 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCCCGCGTGTCCACTATCTCTCTGCCCACCGCCCCTCCAG < 41bp 1 0.692924373629363 1 0.282211899757385 experiment 0.614151252741275 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459799 synonymous SNV . 0 16 hm5C_associated_SNPs_19089 0 0 0 0 1 Cytosol 1 0.500231643920717 1 0.999536712158566 hm5C_site_20361 DeepMRMD:1;iRNA_m5C:0.999536712158566 20362 chr7 142459799 142459799 1 + C T COAD 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CCCGCGTGTCCACTATCTCTCTGCCCACCGCCCCTCCAGCC < 41bp 1 0.608846608704581 1 0.370394229888916 experiment 0.782306782590839 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459799 synonymous SNV . 0 14 hm5C_associated_SNPs_19090 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_20362 DeepMRMD:1;iRNA_m5C:0.999536712157816 20363 chr7 142459799 142459799 1 + C T COAD 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCGTGTCCACTATCTCTCTGCCCACCGCCCCTCCAGCCACT < 41bp 1 0.156954897412299 1 0.0361928045749664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459799 synonymous SNV . 0 11 hm5C_associated_SNPs_19091 0 0 0 0 1 Cytosol 1 0.50023164395763 1 0.999536712084739 hm5C_site_20363 DeepMRMD:1;iRNA_m5C:0.999536712084739 20364 chr7 142459799 142459799 1 + C T COAD 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CGTGTCCACTATCTCTCTGCCCACCGCCCCTCCAGCCACTG < 41bp 1 0.214126250549293 1 0.0385346710681915 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459799 synonymous SNV . 0 10 hm5C_associated_SNPs_19092 0 0 0 0 1 Cytosol 1 0.500231643920637 1 0.999536712158727 hm5C_site_20364 DeepMRMD:1;iRNA_m5C:0.999536712158727 20365 chr7 142459799 142459799 1 + C T COAD 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG GTGTCCACTATCTCTCTGCCCACCGCCCCTCCAGCCACTGG < 41bp 1 0.668707221714661 1 0.039907306432724 experiment 0.662585556570678 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459799 synonymous SNV . 0 9 hm5C_associated_SNPs_19093 0 0 0 0 1 Cytosol 1 0.500231643924328 1 0.999536712151343 hm5C_site_20365 DeepMRMD:1;iRNA_m5C:0.999536712151343 20366 chr7 142459799 142459799 1 + C T COAD 142459813 + 142459793 142459833 41 GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA GTCCACTATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA < 41bp 1 0.274024114297266 1 0.113823771476746 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459813 chr7:142459799 synonymous SNV . 0 7 hm5C_associated_SNPs_19094 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_20366 DeepMRMD:1;iRNA_m5C:0.999536712157814 20367 chr7 142459799 142459799 1 + C T COAD 142459814 + 142459794 142459834 41 TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC TCCACTATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC < 41bp 1 0.50392387796627 1 0.16686424612999 experiment 0.992152244067461 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459814 chr7:142459799 synonymous SNV . 0 6 hm5C_associated_SNPs_19095 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_20367 DeepMRMD:1;iRNA_m5C:0.999536712157815 20368 chr7 142459799 142459799 1 + C T COAD 142459816 + 142459796 142459836 41 CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA CACTATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA < 41bp 1 0.247704706499695 1 0.191295981407166 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459816 chr7:142459799 synonymous SNV . 0 4 hm5C_associated_SNPs_19096 0 0 0 0 1 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_20368 DeepMRMD:1;iRNA_m5C:0.999536712157808 20369 chr7 142459799 142459799 1 + C T COAD 142459817 + 142459797 142459837 41 ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA ACTATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA < 41bp 1 0.132676528241309 1 0.352782905101776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459817 chr7:142459799 synonymous SNV . 0 3 hm5C_associated_SNPs_19097 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20369 DeepMRMD:1;iRNA_m5C:0.999536712157815 20370 chr7 142459799 142459799 1 + C T COAD 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CTATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG < 41bp 1 0.112091195757316 1 0.309674948453903 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459799 synonymous SNV . 0 2 hm5C_associated_SNPs_19098 0 0 0 0 1 Cytosol 1 0.500231659797322 1 0.999536680405356 hm5C_site_20370 DeepMRMD:1;iRNA_m5C:0.999536680405356 20371 chr7 142459799 142459799 1 + C T COAD 142459819 + 142459799 142459839 41 CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT TATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT < 41bp 1 0.678981076490912 1 0.935839235782623 experiment 0.642037847018176 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459819 chr7:142459799 synonymous SNV . 0 1 hm5C_associated_SNPs_19099 0 0 0 0 1 Cytosol 1 0.500231643921092 0.128321528434754 0.999536712157815 hm5C_site_20371 DeepMRMD:0.128321528434754;iRNA_m5C:0.999536712157815 20372 chr5 141353245 141353245 1 + T C COAD 141353260 + 141353240 141353280 41 GTCTGTCCAAGGTGGAGAAACCAGGATCTATTTGGATTTGC GTCTGCCCAAGGTGGAGAAACCAGGATCTATTTGGATTTGC < 41bp 1 0.552065913956679 1 0.106529206037521 experiment 0.895868172086642 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141353260 chr5:141353245 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_19101 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20372 DeepMRMD:1;iRNA_m5C:0.999536712157815 20373 chr7 69064845 69064845 1 + G A COAD 69064849 + 69064829 69064869 41 TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG TCCTCCGCCCCGTCCCAGCCCAGACCCCCGCGGAGGAAGCG < 41bp 1 0.185526694081726 1 0.0417595207691193 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064849 chr7:69064845 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_19102 0 0 0 0 0 Nucleus 1 0.500231643920923 1 0.999536712158154 hm5C_site_20373 DeepMRMD:1;iRNA_m5C:0.999536712158154 20374 chr19 55997947 55997947 1 + G A COAD 55997929 + 55997909 55997949 41 GGTGTTCCTGGCTGTGGCCGCCGTGAAGCTGGGCCTGCGGG GGTGTTCCTGGCTGTGGCCGCCGTGAAGCTGGGCCTGCAGG < 41bp 1 0.300403876437902 1 0.7710200548172 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAT14 ENSG00000090971 CDS Human protein_coding chr19:55997929 chr19:55997947 nonsynonymous SNV 0.998 2 39 hm5C_associated_SNPs_19103 0 0 1 0 0 chromatin 1 0.500231647161317 0.4579598903656 0.999536705677366 hm5C_site_20374 DeepMRMD:0.4579598903656;iRNA_m5C:0.999536705677366 20375 chrX 152037427 152037427 1 + T G COAD 152037426 + 152037406 152037446 41 GCCCCCAAGTACCACATCCCCTACTGGGTGGCCTACTACCT GCCCCCAAGTACCACATCCCCGACTGGGTGGCCTACTACCT < 41bp 1 0.604172212035597 1 0.0284517705440521 experiment 0.791655575928806 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSDHL ENSG00000147383 CDS Human protein_coding chrX:152037426 chrX:152037427 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_19104 0 0 1 0 1 Ribosome 1 0.500231643927271 1 0.999536712145458 hm5C_site_20375 DeepMRMD:1;iRNA_m5C:0.999536712145458 20376 chr11 68177405 68177405 1 + C T COAD 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CGCCTTCATGAATGGGAGCTCGGTGGAGCACGTGGTGGAGT < 41bp 1 0.448739310552339 1 0.69089812040329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177405 synonymous SNV . 0 13 hm5C_associated_SNPs_19105 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643917338 0.61820375919342 0.999536712165325 hm5C_site_20376 DeepMRMD:0.61820375919342;iRNA_m5C:0.999536712165325 20377 chr14 102466397 102466397 1 + C T COAD 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGATGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG < 41bp 1 0.214779675333768 1 0.578078627586365 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466397 synonymous SNV . 0 4 hm5C_associated_SNPs_19106 0 0 1 0 2 Cytosol 1 0.500231643920806 0.84384274482727 0.999536712158389 hm5C_site_20377 DeepMRMD:0.84384274482727;iRNA_m5C:0.999536712158389 20378 chr22 46627827 46627827 1 + G A COAD 46627826 + 46627806 46627846 41 CAGTGCACGTCAGTGGAGACCGTCACGGAGCTCACGGAATT CAGTGCACGTCAGTGGAGACCATCACGGAGCTCACGGAATT < 41bp 1 0.407962655397437 1 0.0408827066421509 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPARA ENSG00000186951 CDS Human protein_coding chr22:46627826 chr22:46627827 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_19107 0 0 1 0 0 chromatin 1 0.500140377342961 1 0.999719245314077 hm5C_site_20378 DeepMRMD:1;iRNA_m5C:0.999719245314077 20379 chr1 225284937 225284937 1 + C T COAD 225284922 + 225284902 225284942 41 TTTATCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAGG TTTATCTTGAACCAGTCTTTCATTCTTCAGAAATATGAAGG < 41bp 1 0.0186216693967212 1 0.0647811889648438 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAH14 ENSG00000185842 CDS Human protein_coding chr1:225284922 chr1:225284937 stopgain 0.990 0 36 hm5C_associated_SNPs_19109 0 0 0 0 1 Cytosol 1 0.500231641154892 1 0.999536717690215 hm5C_site_20379 DeepMRMD:1;iRNA_m5C:0.999536717690215 20380 chr19 1360354 1360354 1 + G A COAD 1360355 + 1360335 1360375 41 CCCCGCGGAGACGTGTTGGGCAGTTCCAGACCTCACAGGAG CCCCGCGGAGACGTGTTGGACAGTTCCAGACCTCACAGGAG < 41bp 1 0.275786676177554 1 0.315778642892838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MUM1 ENSG00000160953 CDS Human protein_coding chr19:1360355 chr19:1360354 nonsynonymous SNV 0.001 1 20 hm5C_associated_SNPs_19110 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20380 DeepMRMD:1;iRNA_m5C:0.999536712157815 20381 chr13 52293442 52293442 1 + G A COAD 52293456 + 52293436 52293476 41 GGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA GGCAGCACCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA < 41bp 1 0.558483630234335 1 0.927771210670471 experiment 0.883032739531329 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52293456 chr13:52293442 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_19111 0 0 1 0 1 Cytosol 1 0.500231643921273 0.144457578659058 0.999536712157455 hm5C_site_20381 DeepMRMD:0.144457578659058;iRNA_m5C:0.999536712157455 20382 chr12 101680190 101680190 1 + C T COAD 101680176 + 101680156 101680196 41 GTTTTTTTTGACTATCACCTCGATCCTGGAGACTCAGGACA GTTTTTTTTGACTATCACCTCGATCCTGGAGACTTAGGACA < 41bp 1 0.0893826561955516 1 0.126728713512421 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101680176 chr12:101680190 stopgain 1.000 0 35 hm5C_associated_SNPs_19112 0 0 1 0 2 Cytosol 1 0.500229558598687 1 0.999540882802626 hm5C_site_20382 DeepMRMD:1;iRNA_m5C:0.999540882802626 20383 chr3 33183922 33183922 1 + A T COAD 33183934 + 33183914 33183954 41 CTCTTGGAACTGGAGGAGACCAGCTAGCCCACAGCAACCAA CTCTTGGATCTGGAGGAGACCAGCTAGCCCACAGCAACCAA < 41bp 1 0.440130191132268 1 0.113033831119537 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTAP ENSG00000170275 CDS Human protein_coding chr3:33183934 chr3:33183922 nonsynonymous SNV 0.949 0 9 hm5C_associated_SNPs_19113 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643302115 1 0.999536713395771 hm5C_site_20383 DeepMRMD:1;iRNA_m5C:0.999536713395771 20384 chr3 47456472 47456472 1 + G T COAD 47456479 - 47456459 47456499 41 GGCCTTTTGTCCTCAGGGACCCCAGGGCGGGGCAGTTCCCC GGCCTTTTGTCCTCAGGGACCCCAGGGAGGGGCAGTTCCCC < 41bp 1 0.153864263363168 1 0.111864924430847 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAP ENSG00000114650 CDS Human protein_coding chr3:47456479 chr3:47456472 synonymous SNV . 0 28 hm5C_associated_SNPs_19114 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20384 DeepMRMD:1;iRNA_m5C:0.999536712157815 20385 chr2 37475354 37475354 1 + A C COAD 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAACGAAGATGGGAGAGAGA < 41bp 1 0.10888559822759 1 0.325759053230286 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475354 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_19115 0 0 1 3 1 chromatin 1 0.500231647575813 1 0.999536704848375 hm5C_site_20385 DeepMRMD:1;iRNA_m5C:0.999536704848375 20386 chr2 37475354 37475354 1 + A C COAD 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAACGAAGATGGGAGAGAGAT < 41bp 1 0.475908014237201 1 0.248678803443909 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475354 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_19116 0 0 1 3 1 chromatin 1 0.500231643888976 1 0.999536712222048 hm5C_site_20386 DeepMRMD:1;iRNA_m5C:0.999536712222048 20387 chr9 4662968 4662968 1 + A G COAD 4662948 + 4662928 4662968 41 GGGCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGA GGGCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGG < 41bp 1 0.503766456936508 1 0.617266118526459 experiment 0.992467086126983 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PLPP6 ENSG00000205808 CDS Human protein_coding chr9:4662948 chr9:4662968 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_19117 0 0 0 0 0 Ribosome 1 0.500231643903853 0.765467762947082 0.999536712192294 hm5C_site_20387 DeepMRMD:0.765467762947082;iRNA_m5C:0.999536712192294 20388 chr9 4662968 4662968 1 + A G COAD 4662949 + 4662929 4662969 41 GGCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGAC GGCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGGC < 41bp 1 0.291471125162978 1 0.795514106750488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLPP6 ENSG00000205808 CDS Human protein_coding chr9:4662949 chr9:4662968 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_19118 0 0 0 0 0 Ribosome 1 0.500231643921092 0.408971786499024 0.999536712157815 hm5C_site_20388 DeepMRMD:0.408971786499024;iRNA_m5C:0.999536712157815 20389 chr9 4662968 4662968 1 + A G COAD 4662950 + 4662930 4662970 41 GCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGACA GCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGGCA < 41bp 1 0.586288794193512 1 0.401739835739136 experiment 0.827422411612977 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLPP6 ENSG00000205808 CDS Human protein_coding chr9:4662950 chr9:4662968 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_19119 0 0 0 0 0 Ribosome 1 0.500231643917935 1 0.99953671216413 hm5C_site_20389 DeepMRMD:1;iRNA_m5C:0.99953671216413 20390 chr3 150289802 150289802 1 + C T COAD 150289790 + 150289770 150289810 41 AGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATG AGTTTGGAATTCTAGTTCTACTGAGTTTTGTGTTGTATATG < 41bp 1 0.544080398037776 1 0.17607319355011 experiment 0.911839203924448 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF2A ENSG00000144895 CDS Human protein_coding chr3:150289790 chr3:150289802 nonsynonymous SNV 0.997 0 33 hm5C_associated_SNPs_19120 0 0 1 0 1 Cytosol 1 0.500242270499759 1 0.999515459000481 hm5C_site_20390 DeepMRMD:1;iRNA_m5C:0.999515459000481 20391 chr5 71493401 71493401 1 + G A COAD 71493383 + 71493363 71493403 41 TTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATCCGAG TTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATCCAAG < 41bp 1 0.0369705982301361 1 0.0744484961032867 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493383 chr5:71493401 nonsynonymous SNV 0.055 2 39 hm5C_associated_SNPs_19121 0 0 1 0 0 Cytosol 1 0.50023164557698 1 0.99953670884604 hm5C_site_20391 DeepMRMD:1;iRNA_m5C:0.99953670884604 20392 chr19 54401859 54401859 1 + C A COAD 54401841 + 54401821 54401861 41 GCCGGGGTCCTGGCGGCCGGCCCCACTTCCTCACCCAGCTC GCCGGGGTCCTGGCGGCCGGCCCCACTTCCTCACCCAGATC < 41bp 1 0.599761764850267 1 0.425889670848846 experiment 0.800476470299466 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRKCG ENSG00000126583 CDS Human protein_coding chr19:54401841 chr19:54401859 nonsynonymous SNV 0.984 3 39 hm5C_associated_SNPs_19122 0 0 0 0 0 Cytosol 1 0.500231643921123 1 0.999536712157753 hm5C_site_20392 DeepMRMD:1;iRNA_m5C:0.999536712157753 20393 chr19 54401859 54401859 1 + C A COAD 54401842 + 54401822 54401862 41 CCGGGGTCCTGGCGGCCGGCCCCACTTCCTCACCCAGCTCC CCGGGGTCCTGGCGGCCGGCCCCACTTCCTCACCCAGATCC < 41bp 1 0.181424534119622 1 0.0909470617771149 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRKCG ENSG00000126583 CDS Human protein_coding chr19:54401842 chr19:54401859 nonsynonymous SNV 0.984 3 38 hm5C_associated_SNPs_19123 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20393 DeepMRMD:1;iRNA_m5C:0.999536712157815 20394 chr19 54401859 54401859 1 + C A COAD 54401843 + 54401823 54401863 41 CGGGGTCCTGGCGGCCGGCCCCACTTCCTCACCCAGCTCCA CGGGGTCCTGGCGGCCGGCCCCACTTCCTCACCCAGATCCA < 41bp 1 0.21753466433509 1 0.0748120546340942 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRKCG ENSG00000126583 CDS Human protein_coding chr19:54401843 chr19:54401859 nonsynonymous SNV 0.984 3 37 hm5C_associated_SNPs_19124 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_20394 DeepMRMD:1;iRNA_m5C:0.999536712157815 20395 chr19 54401859 54401859 1 + C A COAD 54401844 + 54401824 54401864 41 GGGGTCCTGGCGGCCGGCCCCACTTCCTCACCCAGCTCCAC GGGGTCCTGGCGGCCGGCCCCACTTCCTCACCCAGATCCAC < 41bp 1 0.284815033179554 1 0.055065929889679 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRKCG ENSG00000126583 CDS Human protein_coding chr19:54401844 chr19:54401859 nonsynonymous SNV 0.984 3 36 hm5C_associated_SNPs_19125 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20395 DeepMRMD:1;iRNA_m5C:0.999536712157815 20396 chr1 118499758 118499758 1 + G A COAD 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AACAAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG < 41bp 1 0.148695776358549 1 0.0592679679393768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499758 nonsynonymous SNV 0.721 0 4 hm5C_associated_SNPs_19126 0 0 1 0 2 Nucleus 1 0.500231643920892 1 0.999536712158215 hm5C_site_20396 DeepMRMD:1;iRNA_m5C:0.999536712158215 20397 chr16 2011672 2011672 1 + C T COAD 2011691 + 2011671 2011711 41 TCCTCCTGAGGCCTGGGGGCCAGAACCATTGCAAATCTTCC TTCTCCTGAGGCCTGGGGGCCAGAACCATTGCAAATCTTCC < 41bp 1 0.571877752216613 1 0.57218736410141 experiment 0.856244495566775 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011691 chr16:2011672 synonymous SNV . 0 2 hm5C_associated_SNPs_19127 0 0 1 0 0 Ribosome 1 0.500231643921092 0.85562527179718 0.999536712157815 hm5C_site_20397 DeepMRMD:0.85562527179718;iRNA_m5C:0.999536712157815 20398 chr14 24707966 24707966 1 + C A COAD 24707977 + 24707957 24707997 41 GAATCCAATCTTCAGTGAGGCGTGCTAGACCTGAGCAGTTC GAATCCAATATTCAGTGAGGCGTGCTAGACCTGAGCAGTTC < 41bp 1 0.435335614967688 1 0.227092653512955 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPR2 ENSG00000100938 CDS Human protein_coding chr14:24707977 chr14:24707966 synonymous SNV . 0 10 hm5C_associated_SNPs_19128 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20398 DeepMRMD:1;iRNA_m5C:0.999536712157815 20399 chr1 44878381 44878381 1 + T A COAD 44878373 + 44878353 44878393 41 ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA ATCGGGAAGCCTCATCTAGCCCAGAGGAACGGAATGACAGA < 41bp 1 0.484640419738627 1 0.279859185218811 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878373 chr1:44878381 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_19129 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20399 DeepMRMD:1;iRNA_m5C:0.999536712157815 20400 chr1 44878381 44878381 1 + T A COAD 44878382 + 44878362 44878402 41 CCTCATCTAGCCCAGAGGATCGGAATGACAGATGTAAGTAC CCTCATCTAGCCCAGAGGAACGGAATGACAGATGTAAGTAC < 41bp 1 0.658083941541611 1 0.422470837831497 experiment 0.683832116916779 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878382 chr1:44878381 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_19130 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20400 DeepMRMD:1;iRNA_m5C:0.999536712157815 20401 chr5 150028806 150028806 1 + G T COAD 150028797 + 150028777 150028817 41 AACTTCACTGCACCCCCCACCTACACTGAGACCTTGTCCAC AACTTCACTGCACCCCCCACCTACACTGATACCTTGTCCAC < 41bp 1 0.504862759362778 1 0.770458817481995 experiment 0.990274481274444 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNPO ENSG00000171992 CDS Human protein_coding chr5:150028797 chr5:150028806 nonsynonymous SNV 0.971 4 30 hm5C_associated_SNPs_19131 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164392117 0.45908236503601 0.999536712157659 hm5C_site_20401 DeepMRMD:0.45908236503601;iRNA_m5C:0.999536712157659 20402 chr20 30366755 30366755 1 + G T COAD 30366771 + 30366751 30366791 41 AACAGATATCATTTGAGGAGCAAGAAGGATGATATTAGTAA AACATATATCATTTGAGGAGCAAGAAGGATGATATTAGTAA < 41bp 1 0.44402472971295 1 0.321256518363953 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30366771 chr20:30366755 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_19132 0 0 1 0 1 Cytosol 1 0.500231643530115 1 0.99953671293977 hm5C_site_20402 DeepMRMD:1;iRNA_m5C:0.99953671293977 20403 chr5 140789634 140789634 1 + G A COAD 140789623 + 140789603 140789643 41 AGTGAGCCCGGACTCTTCAGCCTGGGGCTGCGCACTGGGGA AGTGAGCCCGGACTCTTCAGCCTGGGGCTGCACACTGGGGA < 41bp 1 0.255733429664638 1 0.285666882991791 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHGB6 ENSG00000253305 CDS Human protein_coding chr5:140789623 chr5:140789634 nonsynonymous SNV 0.987 0 32 hm5C_associated_SNPs_19133 0 0 1 0 0 exosome 1 0.500231643921089 1 0.999536712157822 hm5C_site_20403 DeepMRMD:1;iRNA_m5C:0.999536712157822 20404 chr17 79652702 79652702 1 + C T COAD 79652714 + 79652694 79652734 41 GACCTGATCCGCCAAGGGGACACACAGTGAGTTAGCGGGGC GACCTGATTCGCCAAGGGGACACACAGTGAGTTAGCGGGGC < 41bp 1 0.21751902267479 1 0.163092046976089 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79652714 chr17:79652702 synonymous SNV . 0 9 hm5C_associated_SNPs_19134 0 0 1 0 2 Nucleus 1 0.500231643921133 1 0.999536712157735 hm5C_site_20404 DeepMRMD:1;iRNA_m5C:0.999536712157735 20405 chr11 65402839 65402839 1 + C T COAD 65402834 + 65402814 65402854 41 CAACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATG CAACACGCCCTCCCTGCTGGCGCTGTGCCATGTCCTGGATG < 41bp 1 0.139358763411736 1 0.048319548368454 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402834 chr11:65402839 nonsynonymous SNV 0.996 4 26 hm5C_associated_SNPs_19135 0 0 1 0 1 Ribosome 1 0.500231643921176 1 0.999536712157649 hm5C_site_20405 DeepMRMD:1;iRNA_m5C:0.999536712157649 20406 chr11 65402839 65402839 1 + C T COAD 65402836 + 65402816 65402856 41 ACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGAT ACACGCCCTCCCTGCTGGCGCTGTGCCATGTCCTGGATGAT < 41bp 1 0.0629624824244801 1 0.0723572075366974 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402836 chr11:65402839 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_19136 0 0 1 0 1 Ribosome 1 0.500231644204941 1 0.999536711590119 hm5C_site_20406 DeepMRMD:1;iRNA_m5C:0.999536711590119 20407 chr11 65402839 65402839 1 + C T COAD 65402841 + 65402821 65402861 41 CCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTC CCCTCCCTGCTGGCGCTGTGCCATGTCCTGGATGATGCCTC < 41bp 1 0.0634898625887116 1 0.127528667449951 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402841 chr11:65402839 nonsynonymous SNV 0.996 4 19 hm5C_associated_SNPs_19137 0 0 1 0 1 Ribosome 1 0.500231643974137 1 0.999536712051727 hm5C_site_20407 DeepMRMD:1;iRNA_m5C:0.999536712051727 20408 chr11 65402839 65402839 1 + C T COAD 65402842 + 65402822 65402862 41 CCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTCC CCTCCCTGCTGGCGCTGTGCCATGTCCTGGATGATGCCTCC < 41bp 1 0.130088402806578 1 0.373545110225677 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402842 chr11:65402839 nonsynonymous SNV 0.996 4 18 hm5C_associated_SNPs_19138 0 0 1 0 1 Ribosome 1 0.500247772592564 1 0.999504454814872 hm5C_site_20408 DeepMRMD:1;iRNA_m5C:0.999504454814872 20409 chr6 35715391 35715391 1 + G T COAD 35715401 + 35715381 35715421 41 TGGCACAGAAGAATGACCTTCTCTATGACATTCTCAACTGC TGGCACAGAATAATGACCTTCTCTATGACATTCTCAACTGC < 41bp 1 0.481057986182596 1 0.842925786972046 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715401 chr6:35715391 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_19139 0 0 0 0 2 exosome 1 0.500231643921092 0.314148426055908 0.999536712157815 hm5C_site_20409 DeepMRMD:0.314148426055908;iRNA_m5C:0.999536712157815 20410 chr19 41709405 41709405 1 + A C COAD 41709417 + 41709397 41709437 41 AGGCACCAAGCCTAGGGGACCGTACCCGCCTCCCTTACACC AGGCACCACGCCTAGGGGACCGTACCCGCCTCCCTTACACC < 41bp 1 0.0520931160859093 1 0.062833160161972 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41709417 chr19:41709405 nonsynonymous SNV 0.007 0 9 hm5C_associated_SNPs_19140 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20410 DeepMRMD:1;iRNA_m5C:0.999536712157815 20411 chr3 155628648 155628648 1 + G T COAD 155628644 + 155628624 155628664 41 CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGTC CTTGAGTGTATTCGAGAGATCAAATAGAGAGTAGGCACGTC < 41bp 1 0.337205732178715 1 0.130421429872513 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628644 chr3:155628648 stopgain 0.998 1 25 hm5C_associated_SNPs_19141 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_20411 DeepMRMD:1;iRNA_m5C:0.999536712157815 20412 chr16 4700474 4700474 1 + G A COAD 4700472 + 4700452 4700492 41 GATCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT GATCTGAACTTCCTGGGCAGCCACCCGGTCCAGGTGGGTCT < 41bp 1 0.0618634703234344 1 0.0633126795291901 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4700472 chr16:4700474 nonsynonymous SNV 0.600 4 23 hm5C_associated_SNPs_19142 0 0 1 0 1 Cytosol 1 0.500231643921182 1 0.999536712157636 hm5C_site_20412 DeepMRMD:1;iRNA_m5C:0.999536712157636 20413 chr22 38282822 38282822 1 + C A COAD 38282832 + 38282812 38282852 41 ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAG ATGGGGATTTATTCATCCGTCAGATCCACAAATTTGAGGAG < 41bp 1 0.403258155830633 1 0.658248841762543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38282832 chr22:38282822 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_19143 0 0 1 0 2 Cytosol 1 0.500231643921092 0.683502316474914 0.999536712157815 hm5C_site_20413 DeepMRMD:0.683502316474914;iRNA_m5C:0.999536712157815 20414 chr6 3152726 3152726 1 + C T COAD 3152743 + 3152723 3152763 41 CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTTGCG CTGTATTTGATGCCAGAAGGCAAACACAACCTGCATTTGCG < 41bp 1 0.116678875720697 1 0.420662045478821 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BPHL ENSG00000137274 CDS Human protein_coding chr6:3152743 chr6:3152726 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_19145 0 0 1 0 1 Ribosome 1 0.500231643921089 1 0.999536712157821 hm5C_site_20414 DeepMRMD:1;iRNA_m5C:0.999536712157821 20415 chr9 134064461 134064461 1 + A G COAD 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTGAGCCATCTGGGCCTACACCAGCATCCG < 41bp 1 0.588606127793228 1 0.739716470241547 experiment 0.822787744413544 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064461 nonsynonymous SNV 0.931 3 14 hm5C_associated_SNPs_19146 0 0 1 2 2 Cytosol 1 0.500231643921092 0.520567059516906 0.999536712157815 hm5C_site_20415 DeepMRMD:0.520567059516906;iRNA_m5C:0.999536712157815 20416 chr4 79437039 79437039 1 + C T COAD 79437053 + 79437033 79437073 41 AGCGTGCGAGAGCCGAAGACCATCCAGCTCTACAAACACCT AGCGTGTGAGAGCCGAAGACCATCCAGCTCTACAAACACCT < 41bp 1 0.0523888385837216 1 0.0840206742286682 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79437053 chr4:79437039 stopgain 0.272 1 7 hm5C_associated_SNPs_19147 0 0 1 0 1 Nucleus 1 0.500245899389193 1 0.999508201221615 hm5C_site_20416 DeepMRMD:1;iRNA_m5C:0.999508201221615 20417 chr14 21963418 21963418 1 + T G COAD 21963398 + 21963378 21963418 41 CTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAAT CTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAAG < 41bp 1 0.106124277697675 1 0.0305834412574768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963398 chr14:21963418 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_19148 0 0 1 0 1 Ribosome 1 0.500231647004088 1 0.999536705991824 hm5C_site_20417 DeepMRMD:1;iRNA_m5C:0.999536705991824 20418 chr15 90119350 90119350 1 + C T COAD 90119362 + 90119342 90119382 41 GGCCCAGGCCCAGCGCCTGCCGCCCACCCCTAAGCAGGTGA GGCCCAGGTCCAGCGCCTGCCGCCCACCCCTAAGCAGGTGA < 41bp 1 0.33923686349104 1 0.263418316841125 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90119362 chr15:90119350 nonsynonymous SNV 0.135 1 9 hm5C_associated_SNPs_19149 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_20418 DeepMRMD:1;iRNA_m5C:0.999536712157815 20419 chr15 90119350 90119350 1 + C T COAD 90119366 + 90119346 90119386 41 CAGGCCCAGCGCCTGCCGCCCACCCCTAAGCAGGTGATGGA CAGGTCCAGCGCCTGCCGCCCACCCCTAAGCAGGTGATGGA < 41bp 1 0.178081306690438 1 0.264495730400085 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90119366 chr15:90119350 nonsynonymous SNV 0.135 1 5 hm5C_associated_SNPs_19150 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_20419 DeepMRMD:1;iRNA_m5C:0.999536712157815 20420 chr2 189858184 189858184 1 + C A COAD 189858166 + 189858146 189858186 41 ACCTGGACCTCAGGGACACGCTGGTGCTCAAGGTCCTCCTG ACCTGGACCTCAGGGACACGCTGGTGCTCAAGGTCCTCATG < 41bp 1 0.652353831147488 1 0.153252094984055 experiment 0.695292337705023 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189858166 chr2:189858184 nonsynonymous SNV 0.994 4 39 hm5C_associated_SNPs_19152 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157813 hm5C_site_20420 DeepMRMD:1;iRNA_m5C:0.999536712157813 20421 chr19 14574934 14574934 1 + C T COAD 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTTGCGGGATCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.0584138640879924 1 0.182464390993118 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574934 nonsynonymous SNV 0.016 0 13 hm5C_associated_SNPs_19153 0 0 1 0 2 Ribosome 1 0.500231649115611 1 0.999536701768778 hm5C_site_20421 DeepMRMD:1;iRNA_m5C:0.999536701768778 20422 chr1 155057690 155057690 1 + G T COAD 155057673 + 155057653 155057693 41 GCCCCGGGGCGGGACCGGGGCCCGGAGGCGGGGCAGAGCAG GCCCCGGGGCGGGACCGGGGCCCGGAGGCGGGGCAGATCAG < 41bp 1 0.615355425999021 1 0.342341423034668 experiment 0.769289148001958 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA3 ENSG00000143590;ENSG00000251246 CDS Human other chr1:155057673 chr1:155057690 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_19154 0 0 0 0 0 chromatin 1 0.50023164370791 1 0.999536712584181 hm5C_site_20422 DeepMRMD:1;iRNA_m5C:0.999536712584181 20423 chr12 62938743 62938743 1 + A C COAD 62938730 + 62938710 62938750 41 ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGGAT ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAACGCAGGAT < 41bp 1 0.216997939369292 1 0.26512411236763 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62938730 chr12:62938743 nonsynonymous SNV 0.997 4 34 hm5C_associated_SNPs_19157 0 0 1 0 2 Nucleus 1 0.500231643921098 1 0.999536712157804 hm5C_site_20423 DeepMRMD:1;iRNA_m5C:0.999536712157804 20424 chr15 63866324 63866324 1 + G A COAD 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAAAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT < 41bp 1 0.016054118645578 1 0.0899722576141357 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866324 nonsynonymous SNV 0.999 2 3 hm5C_associated_SNPs_19158 0 0 1 1 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20424 DeepMRMD:1;iRNA_m5C:0.999536712157815 20425 chr2 27440801 27440801 1 + G A COAD 27440789 + 27440769 27440809 41 ACCCCGAGGCCCTCACCGATCCCTCCTACAAGGCACAGATC ACCCCGAGGCCCTCACCGATCCCTCCTACAAGACACAGATC < 41bp 1 0.0420758146333295 1 0.277431845664978 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27440789 chr2:27440801 nonsynonymous SNV 0.994 3 33 hm5C_associated_SNPs_19159 0 0 1 0 1 Exosome 1 0.50023161915744 1 0.999536761685121 hm5C_site_20425 DeepMRMD:1;iRNA_m5C:0.999536761685121 20426 chr1 162740231 162740231 1 + G A COAD 162740248 + 162740228 162740268 41 TTCGCCCTGACTACCAGGAGCCATCCAGGCTGATACGAAAA TTCACCCTGACTACCAGGAGCCATCCAGGCTGATACGAAAA < 41bp 1 0.0150402350262516 1 0.059980720281601 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162740248 chr1:162740231 nonsynonymous SNV 0.998 1 4 hm5C_associated_SNPs_19160 0 0 0 0 1 nucleolus 1 0.500231643921195 1 0.99953671215761 hm5C_site_20426 DeepMRMD:1;iRNA_m5C:0.99953671215761 20427 chr2 138762743 138762743 1 + C A COAD 138762727 + 138762707 138762747 41 GTATTATGTAAAAGACATCCCAGCTACCCTGAAATTCTTCC GTATTATGTAAAAGACATCCCAGCTACCCTGAAATTATTCC < 41bp 1 0.247818474199714 1 0.353600829839706 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HNMT ENSG00000150540 CDS Human protein_coding chr2:138762727 chr2:138762743 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_19163 0 0 1 0 2 Cytosol 1 0.500231643921049 1 0.999536712157902 hm5C_site_20427 DeepMRMD:1;iRNA_m5C:0.999536712157902 20428 chr11 10774310 10774310 1 + C A COAD 10774299 + 10774279 10774319 41 CAGGAACACACACAACTGCACATATGGATTGCTTTGGCGGT CAGGAACACACACAACTGCACATATGGATTGATTTGGCGGT < 41bp 1 0.0720905746322475 1 0.0445173382759094 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774299 chr11:10774310 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_19164 0 0 0 0 2 Cytosol 1 0.500231850529694 1 0.999536298940611 hm5C_site_20428 DeepMRMD:1;iRNA_m5C:0.999536298940611 20429 chr17 78319225 78319225 1 + G A COAD 78319214 + 78319194 78319234 41 CCTGCTGCTCCAGAGGGTGCCCTTCAATGTCGACTTTGATA CCTGCTGCTCCAGAGGGTGCCCTTCAATGTCAACTTTGATA < 41bp 1 0.00440811105787634 1 0.0282165110111237 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78319214 chr17:78319225 nonsynonymous SNV 0.152 0 32 hm5C_associated_SNPs_19165 0 0 1 0 0 Nucleus 1 0.500231644035946 1 0.999536711928109 hm5C_site_20429 DeepMRMD:1;iRNA_m5C:0.999536711928109 20430 chr19 49469171 49469171 1 + A G COAD 49469156 + 49469136 49469176 41 ACCAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGGTA ACCAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCGAGGTA < 41bp 1 0.415968600907625 1 0.136418610811234 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469156 chr19:49469171 nonsynonymous SNV 0.569 0 36 hm5C_associated_SNPs_19166 0 0 1 0 1 Cytosol 1 0.500231643927322 1 0.999536712145356 hm5C_site_20430 DeepMRMD:1;iRNA_m5C:0.999536712145356 20431 chr19 49469171 49469171 1 + A G COAD 49469161 + 49469141 49469181 41 CGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGGTAACTAG CGTGGCGGCCGCGCTCTCTTCCAGGACATCGAGGTAACTAG < 41bp 1 0.681665743923662 1 0.803046584129333 experiment 0.636668512152677 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469161 chr19:49469171 nonsynonymous SNV 0.569 0 31 hm5C_associated_SNPs_19167 0 0 1 0 1 Cytosol 1 0.500231643921093 0.393906831741334 0.999536712157815 hm5C_site_20431 DeepMRMD:0.393906831741334;iRNA_m5C:0.999536712157815 20432 chr21 46900063 46900063 1 + A G COAD 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGGCAAGC < 41bp 1 0.0592770102491058 1 0.060441642999649 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900063 nonsynonymous SNV 0.877 3 36 hm5C_associated_SNPs_19168 0 0 0 0 2 Nucleus 1 0.500231643915149 1 0.999536712169701 hm5C_site_20432 DeepMRMD:1;iRNA_m5C:0.999536712169701 20433 chrX 68059878 68059878 1 + C T COAD 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTCAAGATGGTCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.174507985964225 1 0.080784946680069 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059878 nonsynonymous SNV 0.736 1 11 hm5C_associated_SNPs_19169 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20433 DeepMRMD:1;iRNA_m5C:0.999536712157815 20434 chr14 24569454 24569454 1 + T C COAD 24569453 + 24569433 24569473 41 TGGGGAAGGTGTGGCACAGCCTCCAGGCCTCAGCACCTTAA TGGGGAAGGTGTGGCACAGCCCCCAGGCCTCAGCACCTTAA < 41bp 1 0.633841069764543 1 0.64246529340744 experiment 0.732317860470914 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout PCK2 ENSG00000100889 CDS Human protein_coding chr14:24569453 chr14:24569454 synonymous SNV . 0 22 hm5C_associated_SNPs_19170 0 0 1 2 0 Endoplasmic reticulum 1 0.500231643919009 0.71506941318512 0.999536712161982 hm5C_site_20434 DeepMRMD:0.71506941318512;iRNA_m5C:0.999536712161982 20435 chr6 147830463 147830463 1 + G T COAD 147830460 + 147830440 147830480 41 CCCAAACTGAAGCTGAAGATCATGATCAGGGATAAGCTCGT CCCAAACTGAAGCTGAAGATCATTATCAGGGATAAGCTCGT < 41bp 1 0.361740853401063 1 0.0756921768188477 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SAMD5 ENSG00000203727 CDS Human protein_coding chr6:147830460 chr6:147830463 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_19171 0 0 0 0 1 Ribosome 1 0.500231261815183 1 0.999537476369634 hm5C_site_20435 DeepMRMD:1;iRNA_m5C:0.999537476369634 20436 chr19 57910659 57910659 1 + G T COAD 57910662 + 57910642 57910682 41 AGTTCACACCGGAGAAAGACCTTATAAGTGCAATGATTGTG AGTTCACACCGGAGAAATACCTTATAAGTGCAATGATTGTG < 41bp 1 0.152596343884014 1 0.0931307971477509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF548 ENSG00000188785 CDS Human protein_coding chr19:57910662 chr19:57910659 nonsynonymous SNV 0.997 3 18 hm5C_associated_SNPs_19174 0 0 1 0 0 Nucleus 1 0.500231640681093 1 0.999536718637814 hm5C_site_20436 DeepMRMD:1;iRNA_m5C:0.999536718637814 20437 chr5 71493385 71493385 1 + G A COAD 71493379 + 71493359 71493399 41 AAAGTTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATC AAAGTTTTGTCTCCTTTACGCAGCCCACCCCTCATTGGATC < 41bp 1 0.187985136596787 1 0.319209814071655 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493379 chr5:71493385 synonymous SNV . 0 27 hm5C_associated_SNPs_19175 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20437 DeepMRMD:1;iRNA_m5C:0.999536712157815 20438 chr5 71493385 71493385 1 + G A COAD 71493383 + 71493363 71493403 41 TTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATCCGAG TTTTGTCTCCTTTACGCAGCCCACCCCTCATTGGATCCGAG < 41bp 1 0.0237294695643359 1 0.0625238716602325 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493383 chr5:71493385 synonymous SNV . 0 23 hm5C_associated_SNPs_19176 0 0 1 0 0 Cytosol 1 0.500231647399896 1 0.999536705200207 hm5C_site_20438 DeepMRMD:1;iRNA_m5C:0.999536705200207 20439 chr22 42042972 42042972 1 + G T COAD 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCTCTCAATCCTCCTCCAATAAAGCTCTATCGG < 41bp 1 0.13448940973726 1 0.392212569713593 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042972 nonsynonymous SNV 0.357 4 17 hm5C_associated_SNPs_19177 0 0 1 0 1 Cytosol 1 0.5002319328166 1 0.999536134366799 hm5C_site_20439 DeepMRMD:1;iRNA_m5C:0.999536134366799 20440 chr15 90617494 90617494 1 + C T COAD 90617476 + 90617456 90617496 41 AAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGT AAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGTGT < 41bp 1 0.430577415118398 1 0.182442873716354 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90617476 chr15:90617494 synonymous SNV . 0 39 hm5C_associated_SNPs_19178 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20440 DeepMRMD:1;iRNA_m5C:0.999536712157815 20441 chr17 71239108 71239108 1 + C T COAD 71239105 + 71239085 71239125 41 ACGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG ACGATGCTCTTCACAGGATACTTTGTCCTGTGTTGTAGCTG < 41bp 1 0.19691800652301 1 0.0166423320770264 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239105 chr17:71239108 synonymous SNV . 0 24 hm5C_associated_SNPs_19179 0 0 1 0 2 chromatin 1 0.500231643821109 1 0.999536712357782 hm5C_site_20441 DeepMRMD:1;iRNA_m5C:0.999536712357782 20442 chr1 183103801 183103801 1 + G A COAD 183103802 + 183103782 183103822 41 TTGCTTTTCACAGAATGAAGCAAATAACATAAAGATGGAAG TTGCTTTTCACAGAATGAAACAAATAACATAAAGATGGAAG < 41bp 1 0.038256596782195 1 0.513730823993683 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183103802 chr1:183103801 nonsynonymous SNV 0.998 1 20 hm5C_associated_SNPs_19180 0 0 1 0 1 Ribosome 1 0.500231643923213 0.972538352012634 0.999536712153574 hm5C_site_20442 DeepMRMD:0.972538352012634;iRNA_m5C:0.999536712153574 20443 chr2 158157417 158157417 1 + A G COAD 158157419 + 158157399 158157439 41 ACCTCACCCAGCAAAGGGAGCTGCGAAAGAAACTGAAGTGC ACCTCACCCAGCAAAGGGGGCTGCGAAAGAAACTGAAGTGC < 41bp 1 0.4869306744777 1 0.172513782978058 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158157419 chr2:158157417 nonsynonymous SNV 0.990 0 19 hm5C_associated_SNPs_19181 0 0 0 0 1 Exosome 1 0.500231636291812 1 0.999536727416375 hm5C_site_20443 DeepMRMD:1;iRNA_m5C:0.999536727416375 20444 chr17 4435901 4435901 1 + G A COAD 4435915 + 4435895 4435935 41 CTAAAAGGGGTCATGCCGACCAGCTCGGGGACCAGCTCAAG CTAAAAAGGGTCATGCCGACCAGCTCGGGGACCAGCTCAAG < 41bp 1 0.337110384452338 1 0.305902719497681 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4435915 chr17:4435901 nonsynonymous SNV 0.921 3 7 hm5C_associated_SNPs_19182 0 0 0 0 2 Ribosome 1 0.500241376307318 1 0.999517247385363 hm5C_site_20444 DeepMRMD:1;iRNA_m5C:0.999517247385363 20445 chr17 4926869 4926869 1 + G A COAD 4926871 + 4926851 4926891 41 ACCGCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCA ACCGCATGCCGTCAGCCCAGCCCCCCTCGCCACCACTGTCA < 41bp 1 0.0905111053590225 1 0.0177196860313416 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926871 chr17:4926869 nonsynonymous SNV 0.058 0 19 hm5C_associated_SNPs_19183 0 0 1 0 0 Ribosome 1 0.500231643921153 1 0.999536712157694 hm5C_site_20445 DeepMRMD:1;iRNA_m5C:0.999536712157694 20446 chr17 4926869 4926869 1 + G A COAD 4926874 + 4926854 4926894 41 GCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGC GCATGCCGTCAGCCCAGCCCCCCTCGCCACCACTGTCAAGC < 41bp 1 0.0840725404523097 1 0.0279622972011566 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926874 chr17:4926869 nonsynonymous SNV 0.058 0 16 hm5C_associated_SNPs_19184 0 0 1 0 0 Ribosome 1 0.500231665902064 1 0.999536668195873 hm5C_site_20446 DeepMRMD:1;iRNA_m5C:0.999536668195873 20447 chr17 4926869 4926869 1 + G A COAD 4926880 + 4926860 4926900 41 CGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAG CGTCAGCCCAGCCCCCCTCGCCACCACTGTCAAGCTGGGAG < 41bp 1 0.0727940589266488 1 0.170629858970642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926880 chr17:4926869 nonsynonymous SNV 0.058 0 10 hm5C_associated_SNPs_19185 0 0 1 0 0 Ribosome 1 0.500231644837038 1 0.999536710325924 hm5C_site_20447 DeepMRMD:1;iRNA_m5C:0.999536710325924 20448 chr17 4926869 4926869 1 + G A COAD 4926883 + 4926863 4926903 41 CAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAGCGG CAGCCCAGCCCCCCTCGCCACCACTGTCAAGCTGGGAGCGG < 41bp 1 0.161809718213094 1 0.0507593750953674 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926883 chr17:4926869 nonsynonymous SNV 0.058 0 7 hm5C_associated_SNPs_19187 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20448 DeepMRMD:1;iRNA_m5C:0.999536712157815 20449 chr19 54969690 54969690 1 + A G COAD 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGCGCAAGGTCGCCCTCAAGGCCGTGATCAAAAC < 41bp 1 0.120627919091601 1 0.28127783536911 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969690 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_19188 0 0 1 0 1 chromatin 1 0.50022796296437 1 0.999544074071261 hm5C_site_20449 DeepMRMD:1;iRNA_m5C:0.999544074071261 20450 chr1 16778426 16778426 1 + A G COAD 16778416 + 16778396 16778436 41 CTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCAC CTGAGCCTGCTTCCCCCTCCCCCAGGGGGGGAAACCTCCAC < 41bp 1 0.678056908606644 1 0.502085387706757 experiment 0.643886182786712 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778416 chr1:16778426 nonsynonymous SNV 0.906 1 31 hm5C_associated_SNPs_19191 0 0 1 0 2 Ribosome 1 0.500231643921099 0.995829224586486 0.999536712157802 hm5C_site_20450 DeepMRMD:0.995829224586486;iRNA_m5C:0.999536712157802 20451 chr6 151670304 151670304 1 + C T COAD 151670287 + 151670267 151670307 41 AAGCCACGCAGAAATTTCTCCCCCAGCCGAATCTGGCCAAG AAGCCACGCAGAAATTTCTCCCCCAGCCGAATCTGGCTAAG < 41bp 1 0.286359832058157 1 0.140064179897308 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151670287 chr6:151670304 stopgain 0.001 0 38 hm5C_associated_SNPs_19193 0 0 1 0 0 Ribosome 1 0.500231644112803 1 0.999536711774394 hm5C_site_20451 DeepMRMD:1;iRNA_m5C:0.999536711774394 20452 chr4 160264476 160264476 1 + A G COAD 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTGAGGATGATTGCAAAAGAAATTCGTCACGTTG < 41bp 1 0.672128487898212 1 0.724372684955597 experiment 0.655743024203575 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264476 synonymous SNV . 0 10 hm5C_associated_SNPs_19194 0 0 1 0 2 Cytosol 1 0.500231737833982 0.551254630088806 0.999536524332036 hm5C_site_20452 DeepMRMD:0.551254630088806;iRNA_m5C:0.999536524332036 20453 chr12 95681545 95681545 1 + T G COAD 95681551 + 95681531 95681571 41 AAATTAAAGTTGATTCAGCCCCACGTTCAAGCAAGCAACAA AAATTAAAGTTGATGCAGCCCCACGTTCAAGCAAGCAACAA < 41bp 1 0.476157075621064 1 0.0341781377792358 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95681551 chr12:95681545 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_19195 0 0 0 0 1 Endoplasmic reticulum 1 0.500275982948622 1 0.999448034102756 hm5C_site_20453 DeepMRMD:1;iRNA_m5C:0.999448034102756 20454 chr12 132588983 132588983 1 + C T COAD 132588965 + 132588945 132588985 41 AGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAATGTGCGT AGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAATGTGTGT < 41bp 1 0.581068096812652 1 0.503284573554993 experiment 0.837863806374696 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588965 chr12:132588983 nonsynonymous SNV 0.327 3 39 hm5C_associated_SNPs_19196 0 0 1 0 1 chromatin 1 0.500231643921092 0.993430852890014 0.999536712157815 hm5C_site_20454 DeepMRMD:0.993430852890014;iRNA_m5C:0.999536712157815 20455 chr12 132588983 132588983 1 + C T COAD 132588993 + 132588973 132589013 41 GCAGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCC GCAGAATGTGTGTGCAGGTGCCCCTGGCCCTGGGCTGGGCC < 41bp 1 0.256982387688842 1 0.0426687598228455 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588993 chr12:132588983 nonsynonymous SNV 0.327 3 11 hm5C_associated_SNPs_19197 0 0 1 0 1 chromatin 1 0.500231643921185 1 0.999536712157631 hm5C_site_20455 DeepMRMD:1;iRNA_m5C:0.999536712157631 20456 chr12 132588983 132588983 1 + C T COAD 132588994 + 132588974 132589014 41 CAGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCT CAGAATGTGTGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCT < 41bp 1 0.223960249676631 1 0.0312614440917969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588994 chr12:132588983 nonsynonymous SNV 0.327 3 10 hm5C_associated_SNPs_19198 0 0 1 0 1 chromatin 1 0.500231666376953 1 0.999536667246094 hm5C_site_20456 DeepMRMD:1;iRNA_m5C:0.999536667246094 20457 chr12 132588983 132588983 1 + C T COAD 132588995 + 132588975 132589015 41 AGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTC AGAATGTGTGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTC < 41bp 1 0.308028746641791 1 0.0877669453620911 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588995 chr12:132588983 nonsynonymous SNV 0.327 3 9 hm5C_associated_SNPs_19199 0 0 1 0 1 chromatin 1 0.500231643921003 1 0.999536712157995 hm5C_site_20457 DeepMRMD:1;iRNA_m5C:0.999536712157995 20458 chr12 132588983 132588983 1 + C T COAD 132588996 + 132588976 132589016 41 GAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCT GAATGTGTGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCT < 41bp 1 0.532371082573595 1 0.289343625307083 experiment 0.93525783485281 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588996 chr12:132588983 nonsynonymous SNV 0.327 3 8 hm5C_associated_SNPs_19200 0 0 1 0 1 chromatin 1 0.500231641898493 1 0.999536716203013 hm5C_site_20458 DeepMRMD:1;iRNA_m5C:0.999536716203013 20459 chr12 132588983 132588983 1 + C T COAD 132589000 + 132588980 132589020 41 GTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAG GTGTGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAG < 41bp 1 0.27792595235868 1 0.198803216218948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589000 chr12:132588983 nonsynonymous SNV 0.327 3 4 hm5C_associated_SNPs_19201 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_20459 DeepMRMD:1;iRNA_m5C:0.999536712157815 20460 chr12 132588983 132588983 1 + C T COAD 132589001 + 132588981 132589021 41 TGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGC TGTGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGC < 41bp 1 0.386837288890342 1 0.618892967700958 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589001 chr12:132588983 nonsynonymous SNV 0.327 3 3 hm5C_associated_SNPs_19202 0 0 1 0 1 chromatin 1 0.500231643921092 0.762214064598084 0.999536712157815 hm5C_site_20460 DeepMRMD:0.762214064598084;iRNA_m5C:0.999536712157815 20461 chr11 75279869 75279869 1 + G A COAD 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATACCGTGGGTGTCATGATGATGCACCAGACAGG < 41bp 1 0.545533548194266 1 0.249376326799393 experiment 0.908932903611467 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279869 nonsynonymous SNV 0.999 2 35 hm5C_associated_SNPs_19203 0 0 1 0 2 Ribosome 1 0.500231640859596 1 0.999536718280808 hm5C_site_20461 DeepMRMD:1;iRNA_m5C:0.999536718280808 20462 chr3 47032979 47032979 1 + G A COAD 47032971 + 47032951 47032991 41 TGCGGGGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTA TGCGGGGCTGGAGCCGTGGGCCAGCCCCAGACCCGTGCCTA < 41bp 1 0.125946193743921 1 0.65755957365036 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032971 chr3:47032979 synonymous SNV . 0 29 hm5C_associated_SNPs_19204 0 0 0 0 1 Nucleus 1 0.500231643921028 0.68488085269928 0.999536712157944 hm5C_site_20462 DeepMRMD:0.68488085269928;iRNA_m5C:0.999536712157944 20463 chr3 47032979 47032979 1 + G A COAD 47032972 + 47032952 47032992 41 GCGGGGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAG GCGGGGCTGGAGCCGTGGGCCAGCCCCAGACCCGTGCCTAG < 41bp 1 0.30294113241028 1 0.868809640407562 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032972 chr3:47032979 synonymous SNV . 0 28 hm5C_associated_SNPs_19205 0 0 0 0 1 Nucleus 1 0.500231643932545 0.262380719184876 0.999536712134909 hm5C_site_20463 DeepMRMD:0.262380719184876;iRNA_m5C:0.999536712134909 20464 chr3 47032979 47032979 1 + G A COAD 47032975 + 47032955 47032995 41 GGGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGC GGGCTGGAGCCGTGGGCCAGCCCCAGACCCGTGCCTAGTGC < 41bp 1 0.479822979309669 1 0.151509016752243 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032975 chr3:47032979 synonymous SNV . 0 25 hm5C_associated_SNPs_19206 0 0 0 0 1 Nucleus 1 0.500231643906834 1 0.999536712186331 hm5C_site_20464 DeepMRMD:1;iRNA_m5C:0.999536712186331 20465 chr3 47032979 47032979 1 + G A COAD 47032976 + 47032956 47032996 41 GGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGCC GGCTGGAGCCGTGGGCCAGCCCCAGACCCGTGCCTAGTGCC < 41bp 1 0.216931530855632 1 0.647651553153992 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032976 chr3:47032979 synonymous SNV . 0 24 hm5C_associated_SNPs_19207 0 0 0 0 1 Nucleus 1 0.500231643914455 0.704696893692016 0.999536712171091 hm5C_site_20465 DeepMRMD:0.704696893692016;iRNA_m5C:0.999536712171091 20466 chr3 47032979 47032979 1 + G A COAD 47032977 + 47032957 47032997 41 GCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGCCA GCTGGAGCCGTGGGCCAGCCCCAGACCCGTGCCTAGTGCCA < 41bp 1 0.535018145268165 1 0.510604918003082 experiment 0.92996370946367 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032977 chr3:47032979 synonymous SNV . 0 23 hm5C_associated_SNPs_19208 0 0 0 0 1 Nucleus 1 0.50023164393756 0.978790163993836 0.99953671212488 hm5C_site_20466 DeepMRMD:0.978790163993836;iRNA_m5C:0.99953671212488 20467 chr3 47032979 47032979 1 + G A COAD 47032978 + 47032958 47032998 41 CTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGCCAC CTGGAGCCGTGGGCCAGCCCCAGACCCGTGCCTAGTGCCAC < 41bp 1 0.271617187516175 1 0.721880733966827 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032978 chr3:47032979 synonymous SNV . 0 22 hm5C_associated_SNPs_19209 0 0 0 0 1 Nucleus 1 0.500231643920406 0.556238532066346 0.999536712159188 hm5C_site_20467 DeepMRMD:0.556238532066346;iRNA_m5C:0.999536712159188 20468 chr15 45003779 45003779 1 + T C COAD 45003787 + 45003767 45003807 41 CTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATC CTGTGCTCGCGCCACTCTCTCTTTCTGGCCTGGAGGCTATC < 41bp 1 0.141103287294592 1 0.0705050528049469 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B2M ENSG00000166710 CDS Human protein_coding chr15:45003787 chr15:45003779 nonsynonymous SNV 0.003 3 13 hm5C_associated_SNPs_19210 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20468 DeepMRMD:1;iRNA_m5C:0.999536712157815 20469 chr9 140137109 140137109 1 + A G COAD 140137116 + 140137096 140137136 41 GACTGGGTCTGGGATGGGTACCCTCCTCATCAGCAAGATCC GACTGGGTCTGGGGTGGGTACCCTCCTCATCAGCAAGATCC < 41bp 1 0.15282727540135 1 0.0179305076599121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140137116 chr9:140137109 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_19211 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20469 DeepMRMD:1;iRNA_m5C:0.999536712157815 20470 chr7 142459747 142459747 1 + T C COAD 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCCCCAATACGACAGGAAGACTCTGAACAATGACACCATGT < 41bp 1 0.576840741623375 1 0.141913592815399 experiment 0.846318516753249 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459747 nonsynonymous SNV 0.443 5 36 hm5C_associated_SNPs_19213 0 0 0 0 0 Cytosol 1 0.500231633574529 1 0.999536732850941 hm5C_site_20470 DeepMRMD:1;iRNA_m5C:0.999536732850941 20471 chr7 142459747 142459747 1 + T C COAD 142459739 + 142459719 142459759 41 TACGACAGGAAGACTCTGAACAATGACATCATGTTAATCAA TACGACAGGAAGACTCTGAACAATGACACCATGTTAATCAA < 41bp 1 0.504988358286044 1 0.162875950336456 experiment 0.990023283427912 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459739 chr7:142459747 nonsynonymous SNV 0.443 5 29 hm5C_associated_SNPs_19214 0 0 0 0 0 Cytosol 1 0.500231665169342 1 0.999536669661316 hm5C_site_20471 DeepMRMD:1;iRNA_m5C:0.999536669661316 20472 chr7 142459747 142459747 1 + T C COAD 142459748 + 142459728 142459768 41 AAGACTCTGAACAATGACATCATGTTAATCAAGCTCTCCTC AAGACTCTGAACAATGACACCATGTTAATCAAGCTCTCCTC < 41bp 1 0.526090392631731 1 0.0199954509735107 experiment 0.947819214736539 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459748 chr7:142459747 nonsynonymous SNV 0.443 5 20 hm5C_associated_SNPs_19216 0 0 0 0 0 Cytosol 1 0.500231923373659 1 0.999536153252682 hm5C_site_20472 DeepMRMD:1;iRNA_m5C:0.999536153252682 20473 chr7 142459747 142459747 1 + T C COAD 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATGACACCATGTTAATCAAGCTCTCCTCACGTGCAGT < 41bp 1 0.481261287490403 1 0.647993683815002 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459747 nonsynonymous SNV 0.443 5 11 hm5C_associated_SNPs_19217 0 0 0 0 0 Cytosol 1 0.500231643921089 0.704012632369996 0.999536712157823 hm5C_site_20473 DeepMRMD:0.704012632369996;iRNA_m5C:0.999536712157823 20474 chr7 142459747 142459747 1 + T C COAD 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATGACACCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC < 41bp 1 0.166619700667095 1 0.0398800075054169 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459747 nonsynonymous SNV 0.443 5 7 hm5C_associated_SNPs_19218 0 0 0 0 0 Cytosol 1 0.500231641892266 1 0.999536716215468 hm5C_site_20474 DeepMRMD:1;iRNA_m5C:0.999536716215468 20475 chr7 142459747 142459747 1 + T C COAD 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA GACACCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA < 41bp 1 0.437266627881629 1 0.251976162195206 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459747 nonsynonymous SNV 0.443 5 5 hm5C_associated_SNPs_19219 0 0 0 0 0 Cytosol 1 0.500231643948437 1 0.999536712103126 hm5C_site_20475 DeepMRMD:1;iRNA_m5C:0.999536712103126 20476 chr7 142459747 142459747 1 + T C COAD 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG CACCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG < 41bp 1 0.305701205725058 1 0.12131330370903 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459747 nonsynonymous SNV 0.443 5 3 hm5C_associated_SNPs_19220 0 0 0 0 0 Cytosol 1 0.50023164984639 1 0.999536700307219 hm5C_site_20476 DeepMRMD:1;iRNA_m5C:0.999536700307219 20477 chr7 142459747 142459747 1 + T C COAD 142459766 + 142459746 142459786 41 ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC ACCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC < 41bp 1 0.412203486234286 1 0.16831773519516 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459766 chr7:142459747 nonsynonymous SNV 0.443 5 2 hm5C_associated_SNPs_19221 0 0 0 0 0 Cytosol 1 0.50023555854275 1 0.9995288829145 hm5C_site_20477 DeepMRMD:1;iRNA_m5C:0.9995288829145 20478 chr3 31658482 31658482 1 + A G COAD 31658471 + 31658451 31658491 41 TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGAGTTC TCTTGCAGTATCTGAGAGACCGATTAACAAAGCAAGAGTTC < 41bp 1 0.312553303298285 1 0.293170511722565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31658471 chr3:31658482 synonymous SNV . 0 32 hm5C_associated_SNPs_19222 0 0 1 0 2 Nucleus 1 0.500231611371981 1 0.999536777256038 hm5C_site_20478 DeepMRMD:1;iRNA_m5C:0.999536777256038 20479 chr5 139893011 139893011 1 + G A COAD 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTGTGAAGGCTAAAGACCAGCAAGCTACAGAAGCAAATAAG < 41bp 1 0.177506612548483 1 0.465480446815491 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139893011 nonsynonymous SNV 0.997 3 27 hm5C_associated_SNPs_19223 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157817 hm5C_site_20479 DeepMRMD:1;iRNA_m5C:0.999536712157817 20480 chr1 43900106 43900106 1 + C T COAD 43900109 + 43900089 43900129 41 CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGAGGCGAGTT CTGAGTGTCGCCACCTGTAGCAGCTCCTGGTGAGGCGAGTT < 41bp 1 0.145133732244385 1 0.444077521562576 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43900109 chr1:43900106 stopgain 1.000 1 18 hm5C_associated_SNPs_19224 0 0 1 0 2 Cytosol 1 0.500231643923812 1 0.999536712152376 hm5C_site_20480 DeepMRMD:1;iRNA_m5C:0.999536712152376 20481 chr6 41557797 41557797 1 + G A COAD 41557781 + 41557761 41557801 41 TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGC TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCACAGC < 41bp 1 0.110182142694698 1 0.0318504869937897 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557781 chr6:41557797 nonsynonymous SNV 0.388 3 37 hm5C_associated_SNPs_19225 0 0 1 0 2 Nucleus 1 0.500231651765378 1 0.999536696469244 hm5C_site_20481 DeepMRMD:1;iRNA_m5C:0.999536696469244 20482 chr9 2186139 2186139 1 + C T COAD 2186154 + 2186134 2186174 41 GAGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG GAGTGTCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG < 41bp 1 0.226526333162229 1 0.0902314484119415 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186154 chr9:2186139 nonsynonymous SNV 0.998 1 6 hm5C_associated_SNPs_19226 0 0 1 0 1 Nucleus 1 0.500231643921976 1 0.999536712156048 hm5C_site_20482 DeepMRMD:1;iRNA_m5C:0.999536712156048 20483 chr9 2186139 2186139 1 + C T COAD 2186155 + 2186135 2186175 41 AGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGGA AGTGTCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGGA < 41bp 1 0.310851358833779 1 0.728354454040527 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186155 chr9:2186139 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_19227 0 0 1 0 1 Nucleus 1 0.500231644015646 0.543291091918946 0.999536711968708 hm5C_site_20483 DeepMRMD:0.543291091918946;iRNA_m5C:0.999536711968708 20484 chr17 38142927 38142927 1 + G A COAD 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTATCTCCAACTCCTCATGGTCATCTTCATGATGAA < 41bp 1 0.331353034285213 1 0.0825774073600769 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142927 nonsynonymous SNV 0.782 1 22 hm5C_associated_SNPs_19228 0 0 1 0 2 Ribosome 1 0.500231643279563 1 0.999536713440874 hm5C_site_20484 DeepMRMD:1;iRNA_m5C:0.999536713440874 20485 chr19 30499995 30499995 1 + C T COAD 30500003 + 30499983 30500023 41 CAAATGTGAATGCGATGCATCAAGTAACAGACTCTCATACT CAAATGTGAATGTGATGCATCAAGTAACAGACTCTCATACT < 41bp 1 0.524228726853102 1 0.191622018814087 experiment 0.951542546293797 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30500003 chr19:30499995 nonsynonymous SNV 0.003 0 13 hm5C_associated_SNPs_19229 0 0 1 0 1 Cytosol 1 0.50056320517483 1 0.998873589650339 hm5C_site_20485 DeepMRMD:1;iRNA_m5C:0.998873589650339 20486 chr19 18968311 18968311 1 + C T COAD 18968319 + 18968299 18968339 41 CAACATCTTCTACGAGGGCTCCCTCCAGAATGGTGTCACTG CAACATCTTCTATGAGGGCTCCCTCCAGAATGGTGTCACTG < 41bp 1 0.0265102096739236 1 0.0556504726409912 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18968319 chr19:18968311 synonymous SNV . 0 13 hm5C_associated_SNPs_19230 0 0 1 0 1 Nucleus 1 0.50023164350704 1 0.99953671298592 hm5C_site_20486 DeepMRMD:1;iRNA_m5C:0.99953671298592 20487 chr6 32134500 32134500 1 + C T COAD 32134481 + 32134461 32134501 41 CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCG CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGTG < 41bp 1 0.197577943611863 1 0.125144213438034 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134481 chr6:32134500 nonsynonymous SNV 0.937 3 40 hm5C_associated_SNPs_19231 0 0 1 0 2 chromatin 1 0.500231643723166 1 0.999536712553667 hm5C_site_20487 DeepMRMD:1;iRNA_m5C:0.999536712553667 20488 chr19 41811655 41811655 1 + A T COAD 41811651 + 41811631 41811671 41 CACAGCCCCACCGCCTCCACCTCCACCACCACCTGCCTACA CACAGCCCCACCGCCTCCACCTCCTCCACCACCTGCCTACA < 41bp 1 0.295122896833052 1 0.264297634363174 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41811651 chr19:41811655 synonymous SNV 0.962 0 25 hm5C_associated_SNPs_19232 0 0 1 0 1 Cytosol 1 0.500231643921205 1 0.999536712157591 hm5C_site_20488 DeepMRMD:1;iRNA_m5C:0.999536712157591 20489 chr11 73078717 73078717 1 + T C COAD 73078714 + 73078694 73078734 41 AGGCCTAAAATGCTGGTTATCAGTGGAGGTGATGGCTATGA AGGCCTAAAATGCTGGTTATCAGCGGAGGTGATGGCTATGA < 41bp 1 0.62808101794672 1 0.796654880046844 experiment 0.743837964106561 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73078714 chr11:73078717 synonymous SNV . 0 24 hm5C_associated_SNPs_19233 0 0 0 0 1 Cytosol 1 0.500231643921092 0.406690239906312 0.999536712157815 hm5C_site_20489 DeepMRMD:0.406690239906312;iRNA_m5C:0.999536712157815 20490 chr12 31242070 31242070 1 + C T COAD 31242078 + 31242058 31242098 41 TCGGCTGGTCTCCCTTGGCTCCCGGCAGGTAAACAGTAGCC TCGGCTGGTCTCTCTTGGCTCCCGGCAGGTAAACAGTAGCC < 41bp 1 0.453747566943936 1 0.233781278133392 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31242078 chr12:31242070 synonymous SNV . 0 13 hm5C_associated_SNPs_19234 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20490 DeepMRMD:1;iRNA_m5C:0.999536712157815 20491 chr2 167108302 167108302 1 + C T COAD 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAGAGGCTGAACCTATGAATTCCAATGAGCCAG < 41bp 1 0.405400920038072 1 0.538301408290863 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108302 nonsynonymous SNV 0.978 2 32 hm5C_associated_SNPs_19236 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921094 0.923397183418274 0.999536712157813 hm5C_site_20491 DeepMRMD:0.923397183418274;iRNA_m5C:0.999536712157813 20492 chr19 58757774 58757774 1 + G T COAD 58757778 + 58757758 58757798 41 TGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGTAAG TGACACTGGAGACCTGTGAGCATATTGTCTCCCTGGGTAAG < 41bp 1 0.261688994448973 1 0.0678814947605133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58757778 chr19:58757774 nonsynonymous SNV 0.062 0 17 hm5C_associated_SNPs_19237 0 0 1 0 1 chromatin 1 0.500231961581635 1 0.99953607683673 hm5C_site_20492 DeepMRMD:1;iRNA_m5C:0.99953607683673 20493 chr10 103901206 103901206 1 + C T COAD 103901207 + 103901187 103901227 41 TTCCACATGTACCTATGGGCCCTTGGGATGGGGCCCAGGGC TTCCACATGTACCTATGGGTCCTTGGGATGGGGCCCAGGGC < 41bp 1 0.0729709910579714 1 0.0655192732810974 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901207 chr10:103901206 nonsynonymous SNV 0.967 0 20 hm5C_associated_SNPs_19238 0 0 1 0 0 Cytosol 1 0.500231643073215 1 0.999536713853571 hm5C_site_20493 DeepMRMD:1;iRNA_m5C:0.999536713853571 20494 chr10 103901206 103901206 1 + C T COAD 103901208 + 103901188 103901228 41 TCCACATGTACCTATGGGCCCTTGGGATGGGGCCCAGGGCC TCCACATGTACCTATGGGTCCTTGGGATGGGGCCCAGGGCC < 41bp 1 0.409078473025292 1 0.290769249200821 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901208 chr10:103901206 nonsynonymous SNV 0.967 0 19 hm5C_associated_SNPs_19239 0 0 1 0 0 Cytosol 1 0.500231643921099 1 0.999536712157802 hm5C_site_20494 DeepMRMD:1;iRNA_m5C:0.999536712157802 20495 chr10 103901206 103901206 1 + C T COAD 103901220 + 103901200 103901240 41 TATGGGCCCTTGGGATGGGGCCCAGGGCCTCAACATGCTCC TATGGGTCCTTGGGATGGGGCCCAGGGCCTCAACATGCTCC < 41bp 1 0.162308042889955 1 0.331868410110474 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901220 chr10:103901206 nonsynonymous SNV 0.967 0 7 hm5C_associated_SNPs_19240 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20495 DeepMRMD:1;iRNA_m5C:0.999536712157815 20496 chr10 103901206 103901206 1 + C T COAD 103901221 + 103901201 103901241 41 ATGGGCCCTTGGGATGGGGCCCAGGGCCTCAACATGCTCCA ATGGGTCCTTGGGATGGGGCCCAGGGCCTCAACATGCTCCA < 41bp 1 0.353922347379593 1 0.537227153778076 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901221 chr10:103901206 nonsynonymous SNV 0.967 0 6 hm5C_associated_SNPs_19241 0 0 1 0 0 Cytosol 1 0.500231620149618 0.925545692443848 0.999536759700765 hm5C_site_20496 DeepMRMD:0.925545692443848;iRNA_m5C:0.999536759700765 20497 chr10 103901206 103901206 1 + C T COAD 103901222 + 103901202 103901242 41 TGGGCCCTTGGGATGGGGCCCAGGGCCTCAACATGCTCCAT TGGGTCCTTGGGATGGGGCCCAGGGCCTCAACATGCTCCAT < 41bp 1 0.596852037659567 1 0.777356505393982 experiment 0.806295924680867 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901222 chr10:103901206 nonsynonymous SNV 0.967 0 5 hm5C_associated_SNPs_19242 0 0 1 0 0 Cytosol 1 0.500231643921092 0.445286989212036 0.999536712157815 hm5C_site_20497 DeepMRMD:0.445286989212036;iRNA_m5C:0.999536712157815 20498 chr10 73562768 73562768 1 + G T COAD 73562773 + 73562753 73562793 41 GGTCATCACCATGATGGCCACTGACCAGGATGAAGGTCCCA GGTCATCACCATGATTGCCACTGACCAGGATGAAGGTCCCA < 41bp 1 0.0900488315403909 1 0.0591524839401245 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73562773 chr10:73562768 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_19244 0 0 0 0 1 exosome 1 0.500279166482753 1 0.999441667034495 hm5C_site_20498 DeepMRMD:1;iRNA_m5C:0.999441667034495 20499 chr16 57787128 57787128 1 + C A COAD 57787133 + 57787113 57787153 41 CCAACCCCAGCGCCCCCCTCCGGCGCATCTATGAGCGGCCC CCAACCCCAGCGCCCACCTCCGGCGCATCTATGAGCGGCCC < 41bp 1 0.648698661847295 1 0.78538191318512 experiment 0.702602676305409 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57787133 chr16:57787128 nonsynonymous SNV 0.003 1 16 hm5C_associated_SNPs_19245 0 0 0 0 1 Cytosol 1 0.500231643921093 0.42923617362976 0.999536712157814 hm5C_site_20499 DeepMRMD:0.42923617362976;iRNA_m5C:0.999536712157814 20500 chr1 879180 879180 1 + C T COAD 879184 + 879164 879204 41 GCCCGCCCTCAAGATCCGGGCCCAGGTGAGACGCTGGGGAG GCCCGCCCTCAAGATCTGGGCCCAGGTGAGACGCTGGGGAG < 41bp 1 0.490429591833839 1 0.315983176231384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879184 chr1:879180 nonsynonymous SNV 0.663 4 17 hm5C_associated_SNPs_19247 0 0 0 0 1 nucleus 1 0.500231643920141 1 0.999536712159718 hm5C_site_20500 DeepMRMD:1;iRNA_m5C:0.999536712159718 20501 chr1 879180 879180 1 + C T COAD 879185 + 879165 879205 41 CCCGCCCTCAAGATCCGGGCCCAGGTGAGACGCTGGGGAGT CCCGCCCTCAAGATCTGGGCCCAGGTGAGACGCTGGGGAGT < 41bp 1 0.421649786831178 1 0.407609075307846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879185 chr1:879180 nonsynonymous SNV 0.663 4 16 hm5C_associated_SNPs_19248 0 0 0 0 1 nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_20501 DeepMRMD:1;iRNA_m5C:0.999536712157818 20502 chr1 879180 879180 1 + C T COAD 879186 + 879166 879206 41 CCGCCCTCAAGATCCGGGCCCAGGTGAGACGCTGGGGAGTG CCGCCCTCAAGATCTGGGCCCAGGTGAGACGCTGGGGAGTG < 41bp 1 0.630530427990771 1 0.455974191427231 experiment 0.738939144018459 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879186 chr1:879180 nonsynonymous SNV 0.663 4 15 hm5C_associated_SNPs_19249 0 0 0 0 1 nucleus 1 0.500231643917986 1 0.999536712164028 hm5C_site_20502 DeepMRMD:1;iRNA_m5C:0.999536712164028 20503 chr4 126337744 126337744 1 + C T COAD 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGTGCTTT < 41bp 1 0.578926114031173 1 0.931861579418182 experiment 0.842147771937654 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337744 nonsynonymous SNV 0.003 2 36 hm5C_associated_SNPs_19250 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921129 0.136276841163636 0.999536712157742 hm5C_site_20503 DeepMRMD:0.136276841163636;iRNA_m5C:0.999536712157742 20504 chr15 94841690 94841690 1 + C A COAD 94841673 + 94841653 94841693 41 TGATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCGGC TGATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCAGGC < 41bp 1 0.189841201092478 1 0.0895296633243561 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841673 chr15:94841690 synonymous SNV . 0 38 hm5C_associated_SNPs_19251 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20504 DeepMRMD:1;iRNA_m5C:0.999536712157815 20505 chr15 94841690 94841690 1 + C A COAD 94841674 + 94841654 94841694 41 GATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCGGCC GATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCAGGCC < 41bp 1 0.660935208783246 1 0.397381067276001 experiment 0.678129582433507 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841674 chr15:94841690 synonymous SNV . 0 37 hm5C_associated_SNPs_19252 0 0 0 0 0 exosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_20505 DeepMRMD:1;iRNA_m5C:0.999536712157812 20506 chr7 157041169 157041169 1 + C T COAD 157041160 + 157041140 157041180 41 GTGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA GTGGACATTCACCACCTCGCCTCCCTAGATCCTGAGGTGTA < 41bp 1 0.295340907098155 1 0.156166225671768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157041160 chr7:157041169 synonymous SNV . 0 30 hm5C_associated_SNPs_19253 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20506 DeepMRMD:1;iRNA_m5C:0.999536712157815 20507 chr11 44129682 44129682 1 + T C COAD 44129673 + 44129653 44129693 41 AATGAACTGCTCATGGCCATCTCAGACAGTGACTACTACAC AATGAACTGCTCATGGCCATCTCAGACAGCGACTACTACAC < 41bp 1 0.630205475900047 1 0.253000020980835 experiment 0.739589048199905 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129673 chr11:44129682 synonymous SNV . 0 30 hm5C_associated_SNPs_19254 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920806 1 0.999536712158387 hm5C_site_20507 DeepMRMD:1;iRNA_m5C:0.999536712158387 20508 chr11 67818115 67818115 1 + G A COAD 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTCAGCCTTCCTGCACACCCTGCGGC < 41bp 1 0.0378584397788592 1 0.485622823238373 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818115 nonsynonymous SNV 0.983 3 32 hm5C_associated_SNPs_19255 0 0 1 0 2 Nucleus 1 0.500231643921113 1 0.999536712157775 hm5C_site_20508 DeepMRMD:1;iRNA_m5C:0.999536712157775 20509 chr11 67818115 67818115 1 + G A COAD 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTCAGCCTTCCTGCACACCCTGCGGCT < 41bp 1 0.152499267930062 1 0.614853620529175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818115 nonsynonymous SNV 0.983 3 31 hm5C_associated_SNPs_19256 0 0 1 0 2 Nucleus 1 0.500231644014982 0.77029275894165 0.999536711970035 hm5C_site_20509 DeepMRMD:0.77029275894165;iRNA_m5C:0.999536711970035 20510 chr1 7796527 7796527 1 + C T COAD 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCTGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG < 41bp 1 0.27928224566241 1 0.239354640245438 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796527 nonsynonymous SNV 0.928 4 4 hm5C_associated_SNPs_19257 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20510 DeepMRMD:1;iRNA_m5C:0.999536712157815 20511 chr11 111575828 111575828 1 + C T COAD 111575822 + 111575802 111575842 41 AGCAGAGACTTGATGGCCGCCAGCGTCGGCCTAGCACCATT AGCAGAGACTTGATGGCCGCCAGCGTTGGCCTAGCACCATT < 41bp 1 0.658386614432233 1 0.606493890285492 experiment 0.683226771135534 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control SIK2 ENSG00000170145 CDS Human protein_coding chr11:111575822 chr11:111575828 nonsynonymous SNV 0.983 4 27 hm5C_associated_SNPs_19258 0 0 0 0 1 Cytosol 1 0.500231643921094 0.787012219429016 0.999536712157812 hm5C_site_20511 DeepMRMD:0.787012219429016;iRNA_m5C:0.999536712157812 20512 chr19 19646176 19646176 1 + C T COAD 19646174 + 19646154 19646194 41 ACCCACCATCTTCTACCCCACACGCTCGCTGGACCTGCTGC ACCCACCATCTTCTACCCCACATGCTCGCTGGACCTGCTGC < 41bp 1 0.139719786073222 1 0.043874204158783 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19646174 chr19:19646176 nonsynonymous SNV 0.037 4 23 hm5C_associated_SNPs_19259 0 0 1 0 2 chromatin 1 0.500231643906567 1 0.999536712186867 hm5C_site_20512 DeepMRMD:1;iRNA_m5C:0.999536712186867 20513 chr11 86947694 86947694 1 + C T COAD 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTGTATCACAGCTGCCATGTACATGTTCTTTTTCAG < 41bp 1 0.0525744090773568 1 0.0397069156169891 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947694 synonymous SNV . 0 9 hm5C_associated_SNPs_19260 0 0 1 0 2 Ribosome 1 0.500232375198616 1 0.999535249602767 hm5C_site_20513 DeepMRMD:1;iRNA_m5C:0.999535249602767 20514 chr6 27101078 27101078 1 + G A COAD 27101062 + 27101042 27101082 41 GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAAACCC < 41bp 1 0.312732407375641 1 0.278098613023758 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101062 chr6:27101078 synonymous SNV . 0 37 hm5C_associated_SNPs_19261 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20514 DeepMRMD:1;iRNA_m5C:0.999536712157815 20515 chr6 27101078 27101078 1 + G A COAD 27101063 + 27101043 27101083 41 GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAAACCCG < 41bp 1 0.386427232762153 1 0.157951146364212 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101063 chr6:27101078 synonymous SNV . 0 36 hm5C_associated_SNPs_19262 0 0 1 0 0 Ribosome 1 0.500231643813197 1 0.999536712373606 hm5C_site_20515 DeepMRMD:1;iRNA_m5C:0.999536712373606 20516 chr15 90771676 90771676 1 + T G COAD 90771692 + 90771672 90771712 41 CCACTCAACGGCCTAGGGCCCCCTAGCACCCCGCTCGATCA CCACGCAACGGCCTAGGGCCCCCTAGCACCCCGCTCGATCA < 41bp 1 0.292638232091716 1 0.180633038282394 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90771692 chr15:90771676 nonsynonymous SNV 0.233 4 5 hm5C_associated_SNPs_19263 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_20516 DeepMRMD:1;iRNA_m5C:0.999536712157815 20517 chr6 13616700 13616700 1 + A G COAD 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAAGGAAACTCCTTCCAGACACTATTTTG < 41bp 1 0.317464542991144 1 0.104735612869263 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616700 synonymous SNV . 0 17 hm5C_associated_SNPs_19264 0 0 1 0 2 Ribosome 1 0.500231643920742 1 0.999536712158516 hm5C_site_20517 DeepMRMD:1;iRNA_m5C:0.999536712158516 20518 chr5 36985787 36985787 1 + G A COAD 36985791 + 36985771 36985811 41 CAGAGCGACATCGAGGGGATCAGTCTAGGGTTCGAAGACCA CAGAGCGACATCGAGGAGATCAGTCTAGGGTTCGAAGACCA < 41bp 1 0.147717490552791 1 0.0241758525371552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:36985791 chr5:36985787 synonymous SNV . 0 17 hm5C_associated_SNPs_19265 0 0 1 0 0 Nucleus 1 0.500231643840993 1 0.999536712318014 hm5C_site_20518 DeepMRMD:1;iRNA_m5C:0.999536712318014 20519 chr1 155106006 155106006 1 + G T COAD 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGAAGACCTCTGCTTGAGGTTGAAGGT < 41bp 1 0.0518522286365555 1 0.106829732656479 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106006 nonsynonymous SNV 0.866 2 23 hm5C_associated_SNPs_19266 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920967 1 0.999536712158066 hm5C_site_20519 DeepMRMD:1;iRNA_m5C:0.999536712158066 20520 chr10 75871773 75871773 1 + C G COAD 75871762 + 75871742 75871782 41 GTCCCCCCTGACATGGAAGACGATTACGAACCTGAGCTGCT GTCCCCCCTGACATGGAAGACGATTACGAACGTGAGCTGCT < 41bp 1 0.0978466366300264 1 0.143677294254303 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871762 chr10:75871773 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_19267 1 0 1 0 1 Nucleus 1 0.500318299073812 1 0.999363401852375 hm5C_site_20520 DeepMRMD:1;iRNA_m5C:0.999363401852375 not specified not specified 20521 chr19 45412238 45412238 1 + G C COAD 45412227 + 45412207 45412247 41 CCAGCCGCTACAGGAGCGGGCCCAGGCCTGGGGCGAGCGGC CCAGCCGCTACAGGAGCGGGCCCAGGCCTGGCGCGAGCGGC < 41bp 1 0.284374700146447 1 0.155136317014694 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control APOE ENSG00000130203 CDS Human protein_coding chr19:45412227 chr19:45412238 nonsynonymous SNV 0.009 0 32 hm5C_associated_SNPs_19268 0 0 1 0 0 Cytosol 1 0.500231643579239 1 0.999536712841521 hm5C_site_20521 DeepMRMD:1;iRNA_m5C:0.999536712841521 20522 chr19 45412238 45412238 1 + G C COAD 45412228 + 45412208 45412248 41 CAGCCGCTACAGGAGCGGGCCCAGGCCTGGGGCGAGCGGCT CAGCCGCTACAGGAGCGGGCCCAGGCCTGGCGCGAGCGGCT < 41bp 1 0.471467880398102 1 0.283421695232391 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control APOE ENSG00000130203 CDS Human protein_coding chr19:45412228 chr19:45412238 nonsynonymous SNV 0.009 0 31 hm5C_associated_SNPs_19269 0 0 1 0 0 Cytosol 1 0.500231643921049 1 0.999536712157902 hm5C_site_20522 DeepMRMD:1;iRNA_m5C:0.999536712157902 20523 chr19 45412238 45412238 1 + G C COAD 45412233 + 45412213 45412253 41 GCTACAGGAGCGGGCCCAGGCCTGGGGCGAGCGGCTGCGCG GCTACAGGAGCGGGCCCAGGCCTGGCGCGAGCGGCTGCGCG < 41bp 1 0.554726901306325 1 0.324853956699371 experiment 0.890546197387351 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control APOE ENSG00000130203 CDS Human protein_coding chr19:45412233 chr19:45412238 nonsynonymous SNV 0.009 0 26 hm5C_associated_SNPs_19271 0 0 1 0 0 Cytosol 1 0.500231643921108 1 0.999536712157784 hm5C_site_20523 DeepMRMD:1;iRNA_m5C:0.999536712157784 20524 chr9 131218469 131218469 1 + G A COAD 131218480 + 131218460 131218500 41 CCATGGCACGACCCTGGCCTCCGACTTCAACGACTTCATAA CCATGGCACAACCCTGGCCTCCGACTTCAACGACTTCATAA < 41bp 1 0.207880587727687 1 0.0407792031764984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131218480 chr9:131218469 synonymous SNV . 0 10 hm5C_associated_SNPs_19273 0 0 1 0 1 Cytosol 1 0.500226507956404 1 0.999546984087192 hm5C_site_20524 DeepMRMD:1;iRNA_m5C:0.999546984087192 20525 chr17 21731313 21731313 1 + G C COAD 21731317 + 21731297 21731337 41 GCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCC < 41bp 1 0.162539565738647 1 0.187658935785294 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731317 chr17:21731313 synonymous SNV . 0 17 hm5C_associated_SNPs_19274 0 0 1 0 0 Ribosome 1 0.500231643908324 1 0.999536712183352 hm5C_site_20525 DeepMRMD:1;iRNA_m5C:0.999536712183352 20526 chr19 58290959 58290959 1 + A G COAD 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATTATACGTCTGAGAGTTCACACTGGAGAAAGGCCTTAT < 41bp 1 0.242324889598912 1 0.055432140827179 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290959 nonsynonymous SNV 0.018 4 10 hm5C_associated_SNPs_19275 0 0 1 3 0 chromatin 1 0.500231643691535 1 0.999536712616929 hm5C_site_20526 DeepMRMD:1;iRNA_m5C:0.999536712616929 20527 chr7 98563387 98563387 1 + A G COAD 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACGCGCCTGGCAGTGATGAGCATGGAGGTGCGGAAGAACTT < 41bp 1 0.209216952076538 1 0.332551419734955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563387 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_19276 0 0 1 0 1 Nucleus 1 0.500231643914244 1 0.999536712171512 hm5C_site_20527 DeepMRMD:1;iRNA_m5C:0.999536712171512 20528 chr3 119198925 119198925 1 + C T COAD 119198909 + 119198889 119198929 41 TTGTTGAAGACATCAGAGTACCATGATATCATGTATCCTGC TTGTTGAAGACATCAGAGTACCATGATATCATGTATTCTGC < 41bp 1 0.389516169959905 1 0.0941370129585266 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119198909 chr3:119198925 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_19277 0 0 0 0 2 Ribosome 1 0.500231642818863 1 0.999536714362275 hm5C_site_20528 DeepMRMD:1;iRNA_m5C:0.999536714362275 20529 chr16 66976106 66976106 1 + G A COAD 66976124 + 66976104 66976144 41 GCGGACTCCATGTTTGTGATCCCTGCACTCCAAGTAGCACA GCAGACTCCATGTTTGTGATCCCTGCACTCCAAGTAGCACA < 41bp 1 0.0935781720440251 1 0.0307653844356537 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES2 ENSG00000172831 CDS Human protein_coding chr16:66976124 chr16:66976106 synonymous SNV . 0 3 hm5C_associated_SNPs_19278 0 0 1 0 1 Cytosol 1 0.500231641848603 1 0.999536716302793 hm5C_site_20529 DeepMRMD:1;iRNA_m5C:0.999536716302793 20530 chr11 65396091 65396091 1 + G A COAD 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CATTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG < 41bp 1 0.458768486526883 1 0.665815472602844 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396091 nonsynonymous SNV 0.960 3 2 hm5C_associated_SNPs_19279 0 0 1 0 2 Ribosome 1 0.500231643921093 0.668369054794312 0.999536712157814 hm5C_site_20530 DeepMRMD:0.668369054794312;iRNA_m5C:0.999536712157814 20531 chr17 45773485 45773485 1 + T C COAD 45773473 + 45773453 45773493 41 GTGTGGGCCGCGGCCCGGCCCTCACCATGGAGTCCATGTTC GTGTGGGCCGCGGCCCGGCCCTCACCATGGAGCCCATGTTC < 41bp 1 0.465293596503009 1 0.0643142461776733 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBKBP1 ENSG00000198933 CDS Human protein_coding chr17:45773473 chr17:45773485 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_19280 0 0 1 0 0 Cytosol 1 0.500231642927753 1 0.999536714144494 hm5C_site_20531 DeepMRMD:1;iRNA_m5C:0.999536714144494 20532 chr14 104642895 104642895 1 + C T COAD 104642905 + 104642885 104642925 41 GCAGCTTCTGCTGGCAGGGCCCCCAGCCCCACACTTGGCTC GCAGCTTCTGTTGGCAGGGCCCCCAGCCCCACACTTGGCTC < 41bp 1 0.257523176595935 1 0.505275726318359 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642905 chr14:104642895 nonsynonymous SNV 0.033 0 11 hm5C_associated_SNPs_19281 0 0 0 0 0 Ribosome 1 0.500231644275177 0.989448547363282 0.999536711449645 hm5C_site_20532 DeepMRMD:0.989448547363282;iRNA_m5C:0.999536711449645 20533 chr10 93695423 93695423 1 + C T COAD 93695421 + 93695401 93695441 41 TTTGTTATTTCAGGCTAGATCGCCTTTTTATTTTACTGGAT TTTGTTATTTCAGGCTAGATCGTCTTTTTATTTTACTGGAT < 41bp 1 0.20380251012319 1 0.292532444000244 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93695421 chr10:93695423 synonymous SNV . 0 23 hm5C_associated_SNPs_19282 0 0 1 0 1 Nucleus 1 0.500231643921105 1 0.99953671215779 hm5C_site_20533 DeepMRMD:1;iRNA_m5C:0.99953671215779 20534 chr17 21731315 21731315 1 + T C COAD 21731317 + 21731297 21731337 41 GCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGCGGCACTCTTTCTGACTACAACATCC < 41bp 1 0.154645333777185 1 0.131098449230194 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731317 chr17:21731315 nonsynonymous SNV 0.963 0 19 hm5C_associated_SNPs_19283 0 0 1 0 0 Ribosome 1 0.500231637742308 1 0.999536724515384 hm5C_site_20534 DeepMRMD:1;iRNA_m5C:0.999536724515384 20535 chr1 171759661 171759661 1 + C T COAD 171759671 + 171759651 171759691 41 CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTGTG CCTGCAGCCCTGGGGCAGTCCATTGATAAGAGTTACCTGTG < 41bp 1 0.319687816510331 1 0.0561214089393616 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759671 chr1:171759661 nonsynonymous SNV 0.533 1 11 hm5C_associated_SNPs_19284 0 0 0 0 2 Ribosome 1 0.500231643921331 1 0.999536712157338 hm5C_site_20535 DeepMRMD:1;iRNA_m5C:0.999536712157338 20536 chr3 169953102 169953102 1 + C T COAD 169953106 + 169953086 169953126 41 TGTGTTCTTTTGACAACGAACAGCTCTTCACCATGAAATGG TGTGTTCTTTTGACAATGAACAGCTCTTCACCATGAAATGG < 41bp 1 0.496889650156844 1 0.0670566260814667 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169953106 chr3:169953102 synonymous SNV . 0 17 hm5C_associated_SNPs_19286 0 0 1 0 2 Ribosome 1 0.500232363814616 1 0.999535272370768 hm5C_site_20536 DeepMRMD:1;iRNA_m5C:0.999535272370768 20537 chr5 17275580 17275580 1 + G A COAD 17275572 + 17275552 17275592 41 CGGCTGCCAAGGAGGAGGCCCCGAAGGCGGAGCCCGAGAAG CGGCTGCCAAGGAGGAGGCCCCGAAGGCAGAGCCCGAGAAG < 41bp 1 0.638270177101324 1 0.173676669597626 experiment 0.723459645797352 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275572 chr5:17275580 synonymous SNV . 0 29 hm5C_associated_SNPs_19288 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20537 DeepMRMD:1;iRNA_m5C:0.999536712157815 20538 chr21 47842021 47842021 1 + C T COAD 47842001 + 47841981 47842021 41 GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGC GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGT < 41bp 1 0.0476674001819257 1 0.396171808242798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47842001 chr21:47842021 nonsynonymous SNV 0.003 0 41 hm5C_associated_SNPs_19289 1 0 1 0 1 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20538 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 20539 chr21 47769622 47769622 1 + A G COAD 47769611 + 47769591 47769631 41 TTTCTAGGGGCCCTTAGGAACCTGGAGAGTCATCATCAAGC TTTCTAGGGGCCCTTAGGAACCTGGAGAGTCGTCATCAAGC < 41bp 1 0.0756302259937096 1 0.162389099597931 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47769611 chr21:47769622 nonsynonymous SNV 0.008 1 32 hm5C_associated_SNPs_19290 0 0 1 0 1 Exosome 1 0.500231643924606 1 0.999536712150787 hm5C_site_20539 DeepMRMD:1;iRNA_m5C:0.999536712150787 20540 chr19 33581726 33581726 1 + A G COAD 33581723 + 33581703 33581743 41 TTTGTGTCTTCACGACAGAACAGAGCAGACAAATCTGTTCT TTTGTGTCTTCACGACAGAACAGGGCAGACAAATCTGTTCT < 41bp 1 0.643162758624754 1 0.797497391700745 experiment 0.713674482750493 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33581723 chr19:33581726 synonymous SNV . 0 24 hm5C_associated_SNPs_19291 0 0 1 0 2 Cytosol 1 0.500231643781505 0.40500521659851 0.99953671243699 hm5C_site_20540 DeepMRMD:0.40500521659851;iRNA_m5C:0.99953671243699 20541 chrX 133511666 133511666 1 + C T COAD 133511658 + 133511638 133511678 41 TTTAAAAATCATGTCAAGCTCAGTTGAACAGAAAAAAGGGC TTTAAAAATCATGTCAAGCTCAGTTGAATAGAAAAAAGGGC < 41bp 1 0.222060621855524 1 0.398138523101807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133511658 chrX:133511666 stopgain 1.000 1 29 hm5C_associated_SNPs_19292 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20541 DeepMRMD:1;iRNA_m5C:0.999536712157815 20542 chr12 101674933 101674933 1 + G A COAD 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTAAT < 41bp 1 0.332971241450965 1 0.335434317588806 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674933 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_19293 0 0 1 0 2 Cytosol 1 0.500231643922082 1 0.999536712155836 hm5C_site_20542 DeepMRMD:1;iRNA_m5C:0.999536712155836 20543 chr19 4013016 4013016 1 + G T COAD 4013020 + 4013000 4013040 41 ACGAGCTCGTCACCAGGGCCCTCCAGCTGGTGCAGTTTGAC ACGAGCTCGTCACCAGTGCCCTCCAGCTGGTGCAGTTTGAC < 41bp 1 0.606043355830389 1 0.739099144935608 experiment 0.787913288339222 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4013020 chr19:4013016 nonsynonymous SNV 0.973 4 17 hm5C_associated_SNPs_19294 0 0 1 0 1 chromatin 1 0.500231639937013 0.521801710128784 0.999536720125974 hm5C_site_20543 DeepMRMD:0.521801710128784;iRNA_m5C:0.999536720125974 20544 chr10 103291065 103291065 1 + A G COAD 103291084 + 103291064 103291104 41 TATCCTAAAATTATACAAGACATTGAGGTAAGAATCTATGT TGTCCTAAAATTATACAAGACATTGAGGTAAGAATCTATGT < 41bp 1 0.061760218422982 1 0.0174383223056793 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103291084 chr10:103291065 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_19295 0 0 1 0 2 chromatin 1 0.500231632687032 1 0.999536734625936 hm5C_site_20544 DeepMRMD:1;iRNA_m5C:0.999536734625936 20545 chr19 54967154 54967154 1 + G A COAD 54967152 + 54967132 54967172 41 TGCTGTATTCTCAGGCTGACCCGGGAGCCTGTGGCTGAGAG TGCTGTATTCTCAGGCTGACCCAGGAGCCTGTGGCTGAGAG < 41bp 1 0.35064688931904 1 0.485144704580307 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54967152 chr19:54967154 nonsynonymous SNV 0.985 0 23 hm5C_associated_SNPs_19296 0 0 1 0 1 chromatin 1 0.500231602516617 1 0.999536794966765 hm5C_site_20545 DeepMRMD:1;iRNA_m5C:0.999536794966765 20546 chr4 126238167 126238167 1 + C T COAD 126238148 + 126238128 126238168 41 GACATCACCCTGAACCCGAGCGGCGAGGGAGCGTTCCTGCA GACATCACCCTGAACCCGAGCGGCGAGGGAGCGTTCCTGTA < 41bp 1 0.430470588496031 1 0.470647245645523 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126238148 chr4:126238167 nonsynonymous SNV 0.990 0 40 hm5C_associated_SNPs_19297 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_20546 DeepMRMD:1;iRNA_m5C:0.999536712157815 20547 chr17 48559671 48559671 1 + C T COAD 48559664 + 48559644 48559684 41 CTCTCCCTCTACCAGCTGTCCCTGGAGCGGGGCACCGCACT CTCTCCCTCTACCAGCTGTCCCTGGAGTGGGGCACCGCACT < 41bp 1 0.251299439046935 1 0.21260467171669 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48559664 chr17:48559671 nonsynonymous SNV 0.971 4 28 hm5C_associated_SNPs_19298 0 0 0 0 0 Ribosome 1 0.500231643897977 1 0.999536712204046 hm5C_site_20547 DeepMRMD:1;iRNA_m5C:0.999536712204046 20548 chr9 33026975 33026975 1 + G C COAD 33026973 + 33026953 33026993 41 TTGGAGGAGGAGGAAGGATGCAGAGAGAAAGGAGAGGTAAG TTGGAGGAGGAGGAAGGATGCACAGAGAAAGGAGAGGTAAG < 41bp 1 0.596726564341537 1 0.522157967090607 experiment 0.806546871316927 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DNAJA1 ENSG00000086061 CDS Human protein_coding chr9:33026973 chr9:33026975 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_19299 0 0 1 0 1 Cytosol 1 0.500231643921092 0.955684065818786 0.999536712157815 hm5C_site_20548 DeepMRMD:0.955684065818786;iRNA_m5C:0.999536712157815 20549 chr1 27088712 27088712 1 + G A COAD 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCATCAGCCTTCCGGAGGACAGATA < 41bp 1 0.282542203813245 1 0.0762328207492828 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088712 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_19300 0 0 1 0 2 Nucleus 1 0.500231643921023 1 0.999536712157953 hm5C_site_20549 DeepMRMD:1;iRNA_m5C:0.999536712157953 20550 chr11 107917094 107917094 1 + G A COAD 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAAGCACAGACAGTAAGTTCTACATGC < 41bp 1 0.223632520608126 1 0.2604740858078 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917094 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_19301 0 0 1 1 2 Ribosome 1 0.500231643922703 1 0.999536712154593 hm5C_site_20550 DeepMRMD:1;iRNA_m5C:0.999536712154593 20551 chr19 17887061 17887061 1 + C T COAD 17887060 + 17887040 17887080 41 CCCACTTTGTCCACAGGGCACCATGAAACGCCATTCTTCAC CCCACTTTGTCCACAGGGCACTATGAAACGCCATTCTTCAC < 41bp 1 0.158537138081199 1 0.0288088917732239 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887060 chr19:17887061 synonymous SNV . 0 22 hm5C_associated_SNPs_19302 0 0 1 0 2 Cytosol 1 0.500199431762636 1 0.999601136474728 hm5C_site_20551 DeepMRMD:1;iRNA_m5C:0.999601136474728 20552 chr20 47707365 47707365 1 + G A COAD 47707353 + 47707333 47707373 41 CAAGGTTTTTATCTTCTAAACAGTATAATAGAGCACATGCC CAAGGTTTTTATCTTCTAAACAGTATAATAGAACACATGCC < 41bp 1 0.437245203487189 1 0.530844986438751 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47707353 chr20:47707365 synonymous SNV . 0 33 hm5C_associated_SNPs_19303 0 0 1 0 2 Nucleus 1 0.500231643921153 0.938310027122498 0.999536712157694 hm5C_site_20552 DeepMRMD:0.938310027122498;iRNA_m5C:0.999536712157694 20553 chr16 29708349 29708349 1 + C T COAD 29708330 + 29708310 29708350 41 CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTCA CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTTA < 41bp 1 0.502304673661988 1 0.304864019155502 experiment 0.995390652676024 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708330 chr16:29708349 synonymous SNV . 0 40 hm5C_associated_SNPs_19304 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644293279 1 0.999536711413441 hm5C_site_20553 DeepMRMD:1;iRNA_m5C:0.999536711413441 20554 chr7 76109836 76109836 1 + G T COAD 76109850 + 76109830 76109870 41 GCCATGGCCCCAAGCCCTTCCCTGGTGCAGGTGTACACCAG GCCATGTCCCCAAGCCCTTCCCTGGTGCAGGTGTACACCAG < 41bp 1 0.335720410705654 1 0.368285626173019 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76109850 chr7:76109836 nonsynonymous SNV 0.998 3 7 hm5C_associated_SNPs_19305 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_20554 DeepMRMD:1;iRNA_m5C:0.999536712157816 20555 chr5 10387137 10387137 1 + C T COAD 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCTGTGAGCTCACTACTGACGCTGCCATTAGATATG < 41bp 1 0.294496913195178 1 0.0984874665737152 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387137 synonymous SNV . 0 8 hm5C_associated_SNPs_19306 0 0 1 0 2 Nucleus 1 0.500231643920889 1 0.999536712158222 hm5C_site_20555 DeepMRMD:1;iRNA_m5C:0.999536712158222 20556 chr22 50861978 50861978 1 + C A COAD 50861963 + 50861943 50861983 41 CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGATGCAC < 41bp 1 0.427623373866137 1 0.145799249410629 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50861963 chr22:50861978 nonsynonymous SNV 0.990 3 36 hm5C_associated_SNPs_19307 0 0 1 0 2 Ribosome 1 0.500238703133343 1 0.999522593733314 hm5C_site_20556 DeepMRMD:1;iRNA_m5C:0.999522593733314 20557 chr7 69064869 69064869 1 + G A COAD 69064849 + 69064829 69064869 41 TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCA < 41bp 1 0.155738183694645 1 0.0447830259799957 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064849 chr7:69064869 nonsynonymous SNV 0.998 3 41 hm5C_associated_SNPs_19308 0 0 0 0 1 Nucleus 1 0.500230401741279 1 0.999539196517442 hm5C_site_20557 DeepMRMD:1;iRNA_m5C:0.999539196517442 20558 chr16 67319381 67319381 1 + G A COAD 67319380 + 67319360 67319400 41 TCCACTGCCACTTCTTCCTGCGTGAGCTGGAGGCTTGCACC TCCACTGCCACTTCTTCCTGCATGAGCTGGAGGCTTGCACC < 41bp 1 0.361157807254005 1 0.161538153886795 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67319380 chr16:67319381 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_19309 0 0 1 0 1 Cytosol 1 0.500230170051718 1 0.999539659896564 hm5C_site_20558 DeepMRMD:1;iRNA_m5C:0.999539659896564 20559 chr19 42855641 42855641 1 + C A COAD 42855632 + 42855612 42855652 41 TCTAGCCAGTGCGCCTGGTGCCAGTCCACCCACACCTGCTT TCTAGCCAGTGCGCCTGGTGCCAGTCCACACACACCTGCTT < 41bp 1 0.102240566046612 1 0.167270392179489 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42855632 chr19:42855641 synonymous SNV . 0 30 hm5C_associated_SNPs_19310 0 0 0 0 2 Endoplasmic reticulum 1 0.500232104864561 1 0.999535790270877 hm5C_site_20559 DeepMRMD:1;iRNA_m5C:0.999535790270877 20560 chr14 102476268 102476268 1 + C T COAD 102476275 + 102476255 102476295 41 TGAACCCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC TGAACCCTGGCTATGCGGGCCGGTCTAACCTTCCTGACAAC < 41bp 1 0.040271529101288 1 0.230808734893799 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102476275 chr14:102476268 synonymous SNV . 0 14 hm5C_associated_SNPs_19311 0 0 1 0 1 Cytosol 1 0.500231643790797 1 0.999536712418406 hm5C_site_20560 DeepMRMD:1;iRNA_m5C:0.999536712418406 20561 chr4 44680723 44680723 1 + G C COAD 44680704 + 44680684 44680724 41 CGCGCCACGAGCCACTGGGGCCGCGCTTCTGGTGGCCCCGG CGCGCCACGAGCCACTGGGGCCGCGCTTCTGGTGGCCCCCG < 41bp 1 0.694580440032374 1 0.311735689640045 experiment 0.610839119935253 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680704 chr4:44680723 synonymous SNV . 0 40 hm5C_associated_SNPs_19312 0 0 0 0 1 Ribosome 1 0.500231687320649 1 0.999536625358702 hm5C_site_20561 DeepMRMD:1;iRNA_m5C:0.999536625358702 20562 chr4 44680723 44680723 1 + G C COAD 44680719 + 44680699 44680739 41 TGGGGCCGCGCTTCTGGTGGCCCCGGGGCCCCGGTCCGCGC TGGGGCCGCGCTTCTGGTGGCCCCCGGGCCCCGGTCCGCGC < 41bp 1 0.526460410834763 1 0.114087849855423 experiment 0.947079178330474 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680719 chr4:44680723 synonymous SNV . 0 25 hm5C_associated_SNPs_19313 0 0 0 0 1 Ribosome 1 0.500231643921103 1 0.999536712157793 hm5C_site_20562 DeepMRMD:1;iRNA_m5C:0.999536712157793 20563 chr5 150867568 150867568 1 + G A COAD 150867554 + 150867534 150867574 41 CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCTGGA CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCACCTGGA < 41bp 1 0.0766336959881679 1 0.0280804932117462 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867554 chr5:150867568 nonsynonymous SNV 1.000 0 35 hm5C_associated_SNPs_19315 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643968918 1 0.999536712062164 hm5C_site_20563 DeepMRMD:1;iRNA_m5C:0.999536712062164 20564 chr1 16785425 16785425 1 + G A COAD 16785430 + 16785410 16785450 41 GACTTCTGGGAAGGCGCTCCCTCATCTGGGCCAAAGGAAGG GACTTCTGGGAAGGCACTCCCTCATCTGGGCCAAAGGAAGG < 41bp 1 0.541008932899322 1 0.142171174287796 experiment 0.917982134201356 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16785430 chr1:16785425 synonymous SNV . 0 16 hm5C_associated_SNPs_19316 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_20564 DeepMRMD:1;iRNA_m5C:0.999536712157816 20565 chr1 22332162 22332162 1 + C A COAD 22332166 + 22332146 22332186 41 TGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTG TGCCTGCAGGAGGGATATGACCTACCAGGTGGTGTTGGGTG < 41bp 1 0.0799546752657108 1 0.134816557168961 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332166 chr1:22332162 nonsynonymous SNV 0.003 1 17 hm5C_associated_SNPs_19317 0 0 0 0 1 Endoplasmic reticulum 1 0.500238777308463 1 0.999522445383074 hm5C_site_20565 DeepMRMD:1;iRNA_m5C:0.999522445383074 20566 chr1 22332162 22332162 1 + C A COAD 22332167 + 22332147 22332187 41 GCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGA GCCTGCAGGAGGGATATGACCTACCAGGTGGTGTTGGGTGA < 41bp 1 0.511253172127235 1 0.0525862276554108 experiment 0.977493655745531 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332167 chr1:22332162 nonsynonymous SNV 0.003 1 16 hm5C_associated_SNPs_19318 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_20566 DeepMRMD:1;iRNA_m5C:0.999536712157816 20567 chr1 22332162 22332162 1 + C A COAD 22332170 + 22332150 22332190 41 TGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGAGTA TGCAGGAGGGATATGACCTACCAGGTGGTGTTGGGTGAGTA < 41bp 1 0.446792995658333 1 0.373599976301193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332170 chr1:22332162 nonsynonymous SNV 0.003 1 13 hm5C_associated_SNPs_19319 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643913077 1 0.999536712173846 hm5C_site_20567 DeepMRMD:1;iRNA_m5C:0.999536712173846 20568 chr12 27835607 27835607 1 + G A COAD 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTAATGGTCGAATGCTACATTACATGACTGTTGTAAGT < 41bp 1 0.20798896015511 1 0.176267266273499 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835607 nonsynonymous SNV 0.992 3 6 hm5C_associated_SNPs_19320 0 0 1 0 2 Nucleus 1 0.500231643917956 1 0.999536712164087 hm5C_site_20568 DeepMRMD:1;iRNA_m5C:0.999536712164087 20569 chr7 94293215 94293215 1 + T C COAD 94293216 + 94293196 94293236 41 GATTTCTCAGTTGATCGTGTCCGTGTCTGCTTCGTGACAAG GATTTCTCAGTTGATCGTGCCCGTGTCTGCTTCGTGACAAG < 41bp 1 0.146290384046099 1 0.0257938504219055 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PEG10 ENSG00000242265 CDS Human protein_coding chr7:94293216 chr7:94293215 nonsynonymous SNV 0.824 0 20 hm5C_associated_SNPs_19321 0 0 1 0 0 Endoplasmic reticulum 1 0.500223424223957 1 0.999553151552087 hm5C_site_20569 DeepMRMD:1;iRNA_m5C:0.999553151552087 20570 chr16 88504311 88504311 1 + C T COAD 88504298 + 88504278 88504318 41 AGGGCACACTGCCCAGCAAACGGCGCAGGGTGGCCATGCCC AGGGCACACTGCCCAGCAAACGGCGCAGGGTGGTCATGCCC < 41bp 1 0.643395394319831 1 0.672125637531281 experiment 0.713209211360339 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88504298 chr16:88504311 nonsynonymous SNV 0.003 0 34 hm5C_associated_SNPs_19322 0 0 0 0 0 exosome 1 0.500231643921093 0.655748724937438 0.999536712157813 hm5C_site_20570 DeepMRMD:0.655748724937438;iRNA_m5C:0.999536712157813 20571 chr12 20522579 20522579 1 + G A COAD 20522574 + 20522554 20522594 41 CCCGGGGCCTCGGGGAGGTGCTCCCGGGGGCGGTGCGCGGC CCCGGGGCCTCGGGGAGGTGCTCCCAGGGGCGGTGCGCGGC < 41bp 1 0.661236186910159 1 0.798874497413635 experiment 0.677527626179683 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PDE3A ENSG00000172572 CDS Human protein_coding chr12:20522574 chr12:20522579 nonsynonymous SNV 0.994 1 26 hm5C_associated_SNPs_19323 0 0 0 0 0 Nucleus 1 0.500231642236033 0.40225100517273 0.999536715527933 hm5C_site_20571 DeepMRMD:0.40225100517273;iRNA_m5C:0.999536715527933 20572 chr16 28994545 28994545 1 + C T COAD 28994555 + 28994535 28994575 41 GCTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTG GCTCCACCGCTGAGGCCTTCCAGATCGTGCTGTCCCACCTG < 41bp 1 0.645743261940762 1 0.885396242141724 experiment 0.708513476118475 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994555 chr16:28994545 synonymous SNV . 0 11 hm5C_associated_SNPs_19327 0 0 1 0 2 chromatin 1 0.500231626514312 0.229207515716552 0.999536746971376 hm5C_site_20572 DeepMRMD:0.229207515716552;iRNA_m5C:0.999536746971376 20573 chr3 25542766 25542766 1 + C G COAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGCGAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.288226697520176 1 0.100298523902893 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542766 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_19328 0 0 1 0 2 nucleoplasm 1 0.500231643898285 1 0.99953671220343 hm5C_site_20573 DeepMRMD:1;iRNA_m5C:0.99953671220343 20574 chr18 48604706 48604706 1 + G A COAD 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAAAGGCTGGAGACCGGATTACCCAAGACAGAGCA < 41bp 1 0.50002800962329 1 0.627629995346069 experiment 0.99994398075342 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604706 nonsynonymous SNV 0.996 5 17 hm5C_associated_SNPs_19329 0 0 1 0 1 Cytosol 1 0.500231643921092 0.744740009307862 0.999536712157815 hm5C_site_20574 DeepMRMD:0.744740009307862;iRNA_m5C:0.999536712157815 20575 chr4 126238318 126238318 1 + G A COAD 126238305 + 126238285 126238325 41 TGCAAGACATTAATGACAACCCCCCGGTTTTTGGCAGTTCT TGCAAGACATTAATGACAACCCCCCGGTTTTTGACAGTTCT < 41bp 1 0.032476353423002 1 0.188741981983185 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126238305 chr4:126238318 nonsynonymous SNV 0.980 0 34 hm5C_associated_SNPs_19330 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643937809 1 0.999536712124381 hm5C_site_20575 DeepMRMD:1;iRNA_m5C:0.999536712124381 20576 chr17 57918652 57918652 1 + T C COAD 57918672 + 57918652 57918692 41 TTGACTGTTGAATCTCATGGCAACACCAGTCGATGGGCTGT CTGACTGTTGAATCTCATGGCAACACCAGTCGATGGGCTGT < 41bp 1 0.637449822057732 1 0.157491475343704 experiment 0.725100355884536 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control MIR21 ENSG00000199004 ncRNA_exonic Human other chr17:57918672 chr17:57918652 . . 0 1 hm5C_associated_SNPs_19331 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_20576 DeepMRMD:1;iRNA_m5C:0.999536712157815 20577 chr6 117869500 117869500 1 + C G COAD 117869492 + 117869472 117869512 41 CCCTCGCCACCGAAAGCGGGCACCCTGACTCTCAGAAGCCC CCCTCGCCACCGAAAGCGGGCACCCTGAGTCTCAGAAGCCC < 41bp 1 0.390016063913561 1 0.0240259170532227 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117869492 chr6:117869500 nonsynonymous SNV 0.008 1 29 hm5C_associated_SNPs_19332 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643843661 1 0.999536712312679 hm5C_site_20577 DeepMRMD:1;iRNA_m5C:0.999536712312679 20578 chr12 7177215 7177215 1 + G A COAD 7177213 + 7177193 7177233 41 ACAGAGGATAATTGGAGGATCCGATGCAGATATTAAAAACT ACAGAGGATAATTGGAGGATCCAATGCAGATATTAAAAACT < 41bp 1 0.0657959418862459 1 0.138580858707428 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C1S ENSG00000182326 CDS Human protein_coding chr12:7177213 chr12:7177215 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_19333 0 0 0 0 1 Nucleus 1 0.500231641866923 1 0.999536716266155 hm5C_site_20578 DeepMRMD:1;iRNA_m5C:0.999536716266155 20579 chr5 139909141 139909141 1 + T A COAD 139909148 + 139909128 139909168 41 TTTGCCACCTACATTTGGCCCAGCCACACTTTTCAATCACT TTTGCCACCTACAATTGGCCCAGCCACACTTTTCAATCACT < 41bp 1 0.0619999190110229 1 0.129505187273026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139909148 chr5:139909141 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_19334 0 0 1 0 0 unknown 1 0.500231643921143 1 0.999536712157714 hm5C_site_20579 DeepMRMD:1;iRNA_m5C:0.999536712157714 20580 chr6 33411575 33411575 1 + G C COAD 33411571 + 33411551 33411591 41 GCAGTTGACAGTCAGCGCAGCCCAGAAACCCCGGCCATCCA GCAGTTGACAGTCAGCGCAGCCCACAAACCCCGGCCATCCA < 41bp 1 0.0276173545490782 1 0.0545017123222351 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33411571 chr6:33411575 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_19336 0 0 1 0 0 chromatin 1 0.500231643848642 1 0.999536712302716 hm5C_site_20580 DeepMRMD:1;iRNA_m5C:0.999536712302716 20581 chr1 53420447 53420447 1 + A G COAD 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGGAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.394704023480897 1 0.179698199033737 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420447 nonsynonymous SNV 0.999 3 3 hm5C_associated_SNPs_19337 0 0 1 1 2 Ribosome 1 0.500231642129323 1 0.999536715741353 hm5C_site_20581 DeepMRMD:1;iRNA_m5C:0.999536715741353 20582 chr6 36175100 36175100 1 + A G COAD 36175115 + 36175095 36175135 41 GCAGGATGAGAAGACAAGTGCAGTGAAGGAGGAGCTGAAGT GCAGGGTGAGAAGACAAGTGCAGTGAAGGAGGAGCTGAAGT < 41bp 1 0.255181481668304 1 0.499629020690918 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36175115 chr6:36175100 nonsynonymous SNV 0.987 3 6 hm5C_associated_SNPs_19338 0 0 1 0 1 chromatin 1 0.500231643885201 1 0.999536712229599 hm5C_site_20582 DeepMRMD:1;iRNA_m5C:0.999536712229599 20583 chr2 203157515 203157515 1 + G T COAD 203157511 + 203157491 203157531 41 TTATACTAGGTGATTGAAATCTCTGAATATCGAACCCAGCT TTATACTAGGTGATTGAAATCTCTTAATATCGAACCCAGCT < 41bp 1 0.310499822590475 1 0.231705695390701 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOP58 ENSG00000055044 CDS Human protein_coding chr2:203157511 chr2:203157515 stopgain 0.993 1 25 hm5C_associated_SNPs_19339 0 0 1 0 1 Nucleus 1 0.500231697140872 1 0.999536605718257 hm5C_site_20583 DeepMRMD:1;iRNA_m5C:0.999536605718257 20584 chr2 203157515 203157515 1 + G T COAD 203157513 + 203157493 203157533 41 ATACTAGGTGATTGAAATCTCTGAATATCGAACCCAGCTCT ATACTAGGTGATTGAAATCTCTTAATATCGAACCCAGCTCT < 41bp 1 0.591144861523928 1 0.577799141407013 experiment 0.817710276952145 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOP58 ENSG00000055044 CDS Human protein_coding chr2:203157513 chr2:203157515 stopgain 0.993 1 23 hm5C_associated_SNPs_19340 0 0 1 0 1 Nucleus 1 0.500231643922592 0.844401717185974 0.999536712154815 hm5C_site_20584 DeepMRMD:0.844401717185974;iRNA_m5C:0.999536712154815 20585 chr17 7836621 7836621 1 + T C COAD 7836604 + 7836584 7836624 41 CCGCCTCATGAAGGGTTAGACGGCTTCGCCCAAGAATTGAG CCGCCTCATGAAGGGTTAGACGGCTTCGCCCAAGAATCGAG < 41bp 1 0.572986121223362 1 0.293002486228943 experiment 0.854027757553275 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7836604 chr17:7836621 nonsynonymous SNV 0.963 3 38 hm5C_associated_SNPs_19341 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20585 DeepMRMD:1;iRNA_m5C:0.999536712157815 20586 chr8 143782019 143782019 1 + A C COAD 143782018 + 143781998 143782038 41 ACGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC ACGCCAACCTGACTGCGAGACCACGAGATCCAGAGGACTCC < 41bp 1 0.397475661700531 1 0.0720551908016205 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143782018 chr8:143782019 nonsynonymous SNV 0.190 1 22 hm5C_associated_SNPs_19343 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_20586 DeepMRMD:1;iRNA_m5C:0.999536712157816 20587 chr22 30074255 30074255 1 + C A COAD 30074250 + 30074230 30074270 41 TTCAACCTCATTGGTGACAGCCTGTCTTTCGACTTCAAAGA TTCAACCTCATTGGTGACAGCCTGTATTTCGACTTCAAAGA < 41bp 1 0.110460261569148 1 0.14758625626564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30074250 chr22:30074255 nonsynonymous SNV 0.997 4 26 hm5C_associated_SNPs_19344 0 0 1 0 2 Ribosome 1 0.500231528841645 1 0.999536942316709 hm5C_site_20587 DeepMRMD:1;iRNA_m5C:0.999536942316709 20588 chr5 154396162 154396162 1 + G T COAD 154396182 + 154396162 154396202 41 GAGTTACAAGCTGAGCTGGTCAGAATGGAGCAACAGCACCA TAGTTACAAGCTGAGCTGGTCAGAATGGAGCAACAGCACCA < 41bp 1 0.660305642570413 1 0.266300678253174 experiment 0.679388714859173 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF4B ENSG00000226650 CDS Human protein_coding chr5:154396182 chr5:154396162 stopgain 0.771 0 1 hm5C_associated_SNPs_19345 0 0 0 0 0 exosome 1 0.5002541478719 1 0.999491704256201 hm5C_site_20588 DeepMRMD:1;iRNA_m5C:0.999491704256201 20589 chr1 186047319 186047319 1 + G T COAD 186047314 + 186047294 186047334 41 ATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCCTTCAAT ATGTGTGGCTGTGAATGAGGCTGGATAAGATTCCCTTCAAT < 41bp 1 0.355745748780427 1 0.825096249580383 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186047314 chr1:186047319 stopgain 1.000 1 26 hm5C_associated_SNPs_19346 0 0 0 0 2 nucleus 1 0.500232037254833 0.349807500839234 0.999535925490335 hm5C_site_20589 DeepMRMD:0.349807500839234;iRNA_m5C:0.999535925490335 20590 chr10 17276737 17276737 1 + C T COAD 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT GGAACAATGACGCCCTGTGCCAGGCAAAGCAGGAGTCCACT < 41bp 1 0.57338620703187 1 0.608495652675629 experiment 0.85322758593626 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276737 nonsynonymous SNV 0.997 5 18 hm5C_associated_SNPs_19347 0 0 1 0 2 Ribosome 1 0.500231564767236 0.783008694648742 0.999536870465528 hm5C_site_20590 DeepMRMD:0.783008694648742;iRNA_m5C:0.999536870465528 20591 chr10 17276737 17276737 1 + C T COAD 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT TGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT < 41bp 1 0.290174414969855 1 0.132398396730423 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276737 nonsynonymous SNV 0.997 5 1 hm5C_associated_SNPs_19348 0 0 1 0 2 Ribosome 1 0.500231643921098 1 0.999536712157804 hm5C_site_20591 DeepMRMD:1;iRNA_m5C:0.999536712157804 20592 chr11 107917076 107917076 1 + T C COAD 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGCTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.421888566805512 1 0.399980247020721 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917076 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_19349 0 0 1 1 2 Ribosome 1 0.500231643921751 1 0.999536712156497 hm5C_site_20592 DeepMRMD:1;iRNA_m5C:0.999536712156497 20593 chr18 8114823 8114823 1 + A G COAD 8114803 + 8114783 8114823 41 ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAA ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAG < 41bp 1 0.174654527079759 1 0.0297829210758209 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:8114803 chr18:8114823 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_19350 0 0 1 0 2 Nucleus 1 0.500231607341257 1 0.999536785317486 hm5C_site_20593 DeepMRMD:1;iRNA_m5C:0.999536785317486 20594 chrX 70362053 70362053 1 + A G COAD 70362071 + 70362051 70362091 41 ATATTTGGACGCTACTGAGCCACCTGGAGGAACTGCTTGTG ATGTTTGGACGCTACTGAGCCACCTGGAGGAACTGCTTGTG < 41bp 1 0.452189284322752 1 0.276103258132935 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70362071 chrX:70362053 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_19351 0 0 1 0 1 Cytosol 1 0.50022592827381 1 0.99954814345238 hm5C_site_20594 DeepMRMD:1;iRNA_m5C:0.99954814345238 20595 chr15 93528753 93528753 1 + A G COAD 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCAGACAAATGACAGTGACTCTGGCACTGAGTC < 41bp 1 0.248802107647081 1 0.0567079782485962 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528753 nonsynonymous SNV 0.997 2 32 hm5C_associated_SNPs_19354 0 0 1 0 1 Nucleus 1 0.500231506797704 1 0.999536986404591 hm5C_site_20595 DeepMRMD:1;iRNA_m5C:0.999536986404591 20596 chr16 27760999 27760999 1 + C T COAD 27761012 + 27760992 27761032 41 GTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG GTGCCTTTGACCGCTCCCACCGGGGACGCATCTCCAACACG < 41bp 1 0.568305537749561 1 0.886900782585144 experiment 0.863388924500878 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27761012 chr16:27760999 synonymous SNV . 0 8 hm5C_associated_SNPs_19355 0 0 0 0 1 Nucleus 1 0.500231643921121 0.226198434829712 0.999536712157759 hm5C_site_20596 DeepMRMD:0.226198434829712;iRNA_m5C:0.999536712157759 20597 chr5 92923728 92923728 1 + C T COAD 92923717 + 92923697 92923737 41 AACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT AACGGCCACTGCTACCTGTCCGGCTACATCTTGCTGCTGCT < 41bp 1 0.361825386651176 1 0.320891737937927 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92923717 chr5:92923728 nonsynonymous SNV 0.998 2 32 hm5C_associated_SNPs_19356 0 0 1 0 0 nucleus 1 0.500231643920735 1 0.99953671215853 hm5C_site_20597 DeepMRMD:1;iRNA_m5C:0.99953671215853 20598 chr4 26407847 26407847 1 + T G COAD 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGCGAGGGGATCAAACAGTACTTAGTCTTCAT < 41bp 1 0.320441409805513 1 0.194055557250977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407847 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_19357 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20598 DeepMRMD:1;iRNA_m5C:0.999536712157815 20599 chr10 75557825 75557825 1 + A G COAD 75557805 + 75557785 75557825 41 CTGGCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTA CTGGCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTG < 41bp 1 0.111474831604807 1 0.22045624256134 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557805 chr10:75557825 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_19358 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20599 DeepMRMD:1;iRNA_m5C:0.999536712157815 20600 chr8 26223885 26223885 1 + T G COAD 26223878 + 26223858 26223898 41 TGTTCACTGTATGAAAATGACTGCATATTTGACAAATTTGA TGTTCACTGTATGAAAATGACTGCATAGTTGACAAATTTGA < 41bp 1 0.506079999002433 1 0.0772775709629059 experiment 0.987840001995135 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223878 chr8:26223885 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_19359 0 0 1 0 2 Cytosol 1 0.500231529658433 1 0.999536940683134 hm5C_site_20600 DeepMRMD:1;iRNA_m5C:0.999536940683134 20601 chr8 26223885 26223885 1 + T G COAD 26223881 + 26223861 26223901 41 TCACTGTATGAAAATGACTGCATATTTGACAAATTTGAATG TCACTGTATGAAAATGACTGCATAGTTGACAAATTTGAATG < 41bp 1 0.137130447781031 1 0.115013241767883 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223881 chr8:26223885 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_19360 0 0 1 0 2 Cytosol 1 0.500231665810077 1 0.999536668379846 hm5C_site_20601 DeepMRMD:1;iRNA_m5C:0.999536668379846 20602 chr8 26223885 26223885 1 + T G COAD 26223890 + 26223870 26223910 41 GAAAATGACTGCATATTTGACAAATTTGAATGTTGTTGGAA GAAAATGACTGCATAGTTGACAAATTTGAATGTTGTTGGAA < 41bp 1 0.226981336069359 1 0.330736845731735 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223890 chr8:26223885 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_19361 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20602 DeepMRMD:1;iRNA_m5C:0.999536712157815 20603 chr12 94563003 94563003 1 + T C COAD 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTCTATGGCACCGTGGTAAT < 41bp 1 0.141046698443456 1 0.15627846121788 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563003 synonymous SNV . 0 24 hm5C_associated_SNPs_19362 0 0 1 0 2 chromatin 1 0.500231802393516 1 0.999536395212968 hm5C_site_20603 DeepMRMD:1;iRNA_m5C:0.999536395212968 20604 chr9 100418018 100418018 1 + T G COAD 100418035 + 100418015 100418055 41 AACTTCCAGTTCCGTTGGAGCTGGGAAGATTGGTAAGTGAT AACGTCCAGTTCCGTTGGAGCTGGGAAGATTGGTAAGTGAT < 41bp 1 0.568249831344989 1 0.695029020309448 experiment 0.863500337310022 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100418035 chr9:100418018 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_19363 0 0 1 0 2 Nucleus 1 0.500231643921093 0.609941959381104 0.999536712157815 hm5C_site_20604 DeepMRMD:0.609941959381104;iRNA_m5C:0.999536712157815 20605 chr3 4776946 4776946 1 + G A COAD 4776929 + 4776909 4776949 41 TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATCGACC TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATCAACC < 41bp 1 0.0224907510440298 1 0.0835446417331696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4776929 chr3:4776946 nonsynonymous SNV 0.855 5 38 hm5C_associated_SNPs_19364 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20605 DeepMRMD:1;iRNA_m5C:0.999536712157815 20606 chr3 122399793 122399793 1 + G T COAD 122399812 + 122399792 122399832 41 AGAACTTGAACACCAAGTTGCAGATGTACTTCCAGAGCCCG ATAACTTGAACACCAAGTTGCAGATGTACTTCCAGAGCCCG < 41bp 1 0.392227309290257 1 0.36907035112381 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARP14 ENSG00000173193 CDS Human protein_coding chr3:122399812 chr3:122399793 nonsynonymous SNV 0.795 1 2 hm5C_associated_SNPs_19365 0 0 1 0 0 Nucleus 1 0.500231643916694 1 0.999536712166611 hm5C_site_20606 DeepMRMD:1;iRNA_m5C:0.999536712166611 20607 chr20 42249524 42249524 1 + G T COAD 42249532 + 42249512 42249552 41 TGGCTCACGACAGGAGACATCCACCTAAACCAGATTGATGC TGGCTCACGACATGAGACATCCACCTAAACCAGATTGATGC < 41bp 1 0.115605848658441 1 0.0567057728767395 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42249532 chr20:42249524 stopgain 0.791 0 13 hm5C_associated_SNPs_19366 0 0 1 0 1 chromatin 1 0.500231639887243 1 0.999536720225514 hm5C_site_20607 DeepMRMD:1;iRNA_m5C:0.999536720225514 20608 chr12 22208509 22208509 1 + G A COAD 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TCTCTGTTGTGAGACACCATCAGTTTCGATGGAGTGAAATT < 41bp 1 0.346034440483047 1 0.158171236515045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208509 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_19367 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20608 DeepMRMD:1;iRNA_m5C:0.999536712157815 20609 chr7 129029019 129029019 1 + G T COAD 129029013 + 129028993 129029033 41 TCAAACAGGCAGAGTTTGGACGAAGAGAAATTGAAATTGCT TCAAACAGGCAGAGTTTGGACGAAGATAAATTGAAATTGCT < 41bp 1 0.297904467369258 1 0.305179834365845 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129029013 chr7:129029019 stopgain 1.000 1 27 hm5C_associated_SNPs_19368 0 0 1 0 1 chromatin 1 0.500231672844345 1 0.99953665431131 hm5C_site_20609 DeepMRMD:1;iRNA_m5C:0.99953665431131 20610 chr2 216995653 216995653 1 + G T COAD 216995648 + 216995628 216995668 41 TCTCTAAAGTGGATGAGGAACAAATGAAATATAAATCGGAG TCTCTAAAGTGGATGAGGAACAAATTAAATATAAATCGGAG < 41bp 1 0.325811627146229 1 0.476486444473267 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216995648 chr2:216995653 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_19369 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20610 DeepMRMD:1;iRNA_m5C:0.999536712157815 20611 chr7 134215408 134215408 1 + A C COAD 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCACAGTGAAAG < 41bp 1 0.279557284960692 1 0.31738018989563 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215408 nonsynonymous SNV 0.185 0 33 hm5C_associated_SNPs_19370 0 0 1 0 1 exosome 1 0.50035737057517 1 0.999285258849659 hm5C_site_20611 DeepMRMD:1;iRNA_m5C:0.999285258849659 20612 chr5 158696002 158696002 1 + G A COAD 158695994 + 158695974 158696014 41 CACACTTTCAGAAGATGATACTGTGCTCGATCTCAAACAGT CACACTTTCAGAAGATGATACTGTGCTCAATCTCAAACAGT < 41bp 1 0.320575039057658 1 0.0968188941478729 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158695994 chr5:158696002 nonsynonymous SNV 0.964 2 29 hm5C_associated_SNPs_19371 0 0 1 0 1 Cytosol 1 0.500231660613061 1 0.999536678773878 hm5C_site_20612 DeepMRMD:1;iRNA_m5C:0.999536678773878 20613 chr3 142422794 142422794 1 + G T COAD 142422814 + 142422794 142422834 41 GAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCT TAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCT < 41bp 1 0.302823689630959 1 0.148215532302856 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142422814 chr3:142422794 stopgain 1.000 1 1 hm5C_associated_SNPs_19372 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20613 DeepMRMD:1;iRNA_m5C:0.999536712157815 20614 chr2 86968155 86968155 1 + A G COAD 86968142 + 86968122 86968162 41 TTCAAAAATTGGCCTCCGACCACAAAGACATCCACAGCAGT TTCAAAAATTGGCCTCCGACCACAAAGACATCCGCAGCAGT < 41bp 1 0.42374515581464 1 0.740948379039764 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RMND5A ENSG00000153561 CDS Human protein_coding chr2:86968142 chr2:86968155 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_19374 0 0 0 0 1 Ribosome 1 0.500231643921164 0.518103241920472 0.999536712157671 hm5C_site_20614 DeepMRMD:0.518103241920472;iRNA_m5C:0.999536712157671 20615 chr16 56501925 56501925 1 + C A COAD 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTATTAAG < 41bp 1 0.540315558653331 1 0.925218939781189 experiment 0.919368882693338 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501925 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_19375 0 0 1 0 1 Ribosome 1 0.500231643921121 0.149562120437622 0.999536712157758 hm5C_site_20615 DeepMRMD:0.149562120437622;iRNA_m5C:0.999536712157758 20616 chr10 17272655 17272655 1 + G A COAD 17272665 + 17272645 17272685 41 TCAGATTGCAGGAGGAGATGCTTCAGAGAGAGGAAGCCGAA TCAGATTGCAAGAGGAGATGCTTCAGAGAGAGGAAGCCGAA < 41bp 1 0.468847916370163 1 0.219377368688583 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout VIM ENSG00000026025 CDS Human protein_coding chr10:17272665 chr10:17272655 synonymous SNV . 0 11 hm5C_associated_SNPs_19376 0 0 1 0 2 Ribosome 1 0.500231704201528 1 0.999536591596944 hm5C_site_20616 DeepMRMD:1;iRNA_m5C:0.999536591596944 20617 chr11 65391072 65391072 1 + A G COAD 65391061 + 65391041 65391081 41 AAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGCCT AAGGGCTTCTTCACTGACATCTGGGTCTTCCGGTTCTGCCT < 41bp 1 0.579609595124013 1 0.499529093503952 experiment 0.840780809751975 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65391061 chr11:65391072 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_19377 0 0 1 0 1 Ribosome 1 0.500231643917392 1 0.999536712165216 hm5C_site_20617 DeepMRMD:1;iRNA_m5C:0.999536712165216 20618 chr15 65855202 65855202 1 + G A COAD 65855212 + 65855192 65855232 41 CTGACTGTGCGATTCTGTATCTTGGGAAAAGGCAAGTAAGA CTGACTGTGCAATTCTGTATCTTGGGAAAAGGCAAGTAAGA < 41bp 1 0.485342982647659 1 0.400516837835312 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HACD3 ENSG00000074696 CDS Human protein_coding chr15:65855212 chr15:65855202 nonsynonymous SNV 0.995 3 11 hm5C_associated_SNPs_19378 0 0 1 0 1 Ribosome 1 0.500231643921089 1 0.999536712157821 hm5C_site_20618 DeepMRMD:1;iRNA_m5C:0.999536712157821 20619 chr17 4797387 4797387 1 + G A COAD 4797367 + 4797347 4797387 41 ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCA < 41bp 1 0.439405465520621 1 0.261125862598419 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797367 chr17:4797387 nonsynonymous SNV 0.997 3 41 hm5C_associated_SNPs_19379 0 0 1 0 1 Ribosome 1 0.500231644316046 1 0.999536711367908 hm5C_site_20619 DeepMRMD:1;iRNA_m5C:0.999536711367908 20620 chr5 68490518 68490518 1 + G A COAD 68490522 + 68490502 68490542 41 GCAAGAAAAGCAAATCGAAGCGTATGTTATATTTAAAAATT GCAAGAAAAGCAAATCAAAGCGTATGTTATATTTAAAAATT < 41bp 1 0.199586682707258 1 0.212669193744659 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPH ENSG00000153044 CDS Human protein_coding chr5:68490522 chr5:68490518 nonsynonymous SNV 0.932 2 17 hm5C_associated_SNPs_19380 0 0 0 0 1 Ribosome 1 0.500232640100294 1 0.999534719799412 hm5C_site_20620 DeepMRMD:1;iRNA_m5C:0.999534719799412 20621 chr5 66432400 66432400 1 + A G COAD 66432398 + 66432378 66432418 41 TTCTTCCTTCTAGATGAGATCAACTGGCCTGAGAAGGATGA TTCTTCCTTCTAGATGAGATCAGCTGGCCTGAGAAGGATGA < 41bp 1 0.138443686305914 1 0.209422558546066 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST4 ENSG00000069020 CDS Human protein_coding chr5:66432398 chr5:66432400 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_19381 0 0 1 0 2 Cytosol 1 0.500231643920938 1 0.999536712158124 hm5C_site_20621 DeepMRMD:1;iRNA_m5C:0.999536712158124 20622 chr11 48142739 48142739 1 + G A COAD 48142738 + 48142718 48142758 41 CATCACAGGCTTACGTCCAGCGACTTCATATGTATTCTCCA CATCACAGGCTTACGTCCAGCAACTTCATATGTATTCTCCA < 41bp 1 0.139436906597865 1 0.0363475382328033 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48142738 chr11:48142739 synonymous SNV . 0 22 hm5C_associated_SNPs_19382 0 0 0 0 1 Endoplasmic reticulum 1 0.500231651215825 1 0.999536697568351 hm5C_site_20622 DeepMRMD:1;iRNA_m5C:0.999536697568351 20623 chr3 50614572 50614572 1 + C T COAD 50614569 + 50614549 50614589 41 CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTC CCCCTCATTCTGGAGGTGGGCTGTGGATCAGGAGCCATCTC < 41bp 1 0.517410111866762 1 0.0791099667549133 experiment 0.965179776266475 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614569 chr3:50614572 synonymous SNV . 0 24 hm5C_associated_SNPs_19383 0 0 0 0 2 Ribosome 1 0.500231624038768 1 0.999536751922464 hm5C_site_20623 DeepMRMD:1;iRNA_m5C:0.999536751922464 20624 chr8 100182336 100182336 1 + A G COAD 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCAGTTGTTCCCTCTTTCAGC < 41bp 1 0.0815522941462324 1 0.0640579462051392 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182336 nonsynonymous SNV 0.998 0 27 hm5C_associated_SNPs_19384 0 0 1 0 2 Nucleus 1 0.500231659234743 1 0.999536681530514 hm5C_site_20624 DeepMRMD:1;iRNA_m5C:0.999536681530514 20625 chr11 65978616 65978616 1 + C A COAD 65978630 + 65978610 65978650 41 TCATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGC TCATTTACTTAAGCGAGATGCCAACAAGCTGCAGATCATGC < 41bp 1 0.0134988741987436 1 0.0959980189800262 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978630 chr11:65978616 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_19385 0 0 1 0 1 Cytosol 1 0.500234299330121 1 0.999531401339758 hm5C_site_20625 DeepMRMD:1;iRNA_m5C:0.999531401339758 20626 chr11 65978616 65978616 1 + C A COAD 65978631 + 65978611 65978651 41 CATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT CATTTACTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT < 41bp 1 0.319553925211044 1 0.382912576198578 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978631 chr11:65978616 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_19386 0 0 1 0 1 Cytosol 1 0.50023166251254 1 0.99953667497492 hm5C_site_20626 DeepMRMD:1;iRNA_m5C:0.99953667497492 20627 chr1 28600559 28600559 1 + C T COAD 28600565 + 28600545 28600585 41 CCTCAGCTGACATCCTGGAGCCCTCTCCACACCCAGACATG CCTCAGCTGACATCTTGGAGCCCTCTCCACACCCAGACATG < 41bp 1 0.0236534435605204 1 0.0295820534229279 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600565 chr1:28600559 synonymous SNV . 0 15 hm5C_associated_SNPs_19387 0 0 1 0 1 Ribosome 1 0.500228965853731 1 0.999542068292538 hm5C_site_20627 DeepMRMD:1;iRNA_m5C:0.999542068292538 20628 chr2 177016532 177016532 1 + C T COAD 177016539 + 177016519 177016559 41 CACGGCCCGACTTCGGTGAGCAGCCTTTCGGAGGCAGCGGC CACGGCCCGACTTTGGTGAGCAGCCTTTCGGAGGCAGCGGC < 41bp 1 0.585363719796494 1 0.112929850816727 experiment 0.829272560407011 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HOXD4 ENSG00000170166 CDS Human protein_coding chr2:177016539 chr2:177016532 synonymous SNV . 0 14 hm5C_associated_SNPs_19388 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20628 DeepMRMD:1;iRNA_m5C:0.999536712157815 20629 chr7 102995377 102995377 1 + G T COAD 102995366 + 102995346 102995386 41 AAGTTGAAGATGACATTCAGCAACTTCTCAAGAAAATTAAT AAGTTGAAGATGACATTCAGCAACTTCTCAATAAAATTAAT < 41bp 1 0.311260497207512 1 0.0943071842193604 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:102995366 chr7:102995377 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_19389 0 0 1 0 1 Ribosome 1 0.500231702563754 1 0.999536594872493 hm5C_site_20629 DeepMRMD:1;iRNA_m5C:0.999536594872493 20630 chr4 56291563 56291563 1 + G A COAD 56291562 + 56291542 56291582 41 GTGACAATCATAGGAGGCATCGTTTTTTTGGCGTTTGCATT GTGACAATCATAGGAGGCATCATTTTTTTGGCGTTTGCATT < 41bp 1 0.0864393196679213 1 0.132103383541107 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56291562 chr4:56291563 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_19390 0 0 1 0 1 Ribosome 1 0.500231643916875 1 0.999536712166251 hm5C_site_20630 DeepMRMD:1;iRNA_m5C:0.999536712166251 20631 chr13 20567815 20567815 1 + A G COAD 20567812 + 20567792 20567832 41 GTAAGCTCTGTGAATGATGGCCAATTAGAAAATACTGACGG GTAAGCTCTGTGAATGATGGCCAGTTAGAAAATACTGACGG < 41bp 1 0.170716466897071 1 0.351144969463348 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZMYM2 ENSG00000121741 CDS Human protein_coding chr13:20567812 chr13:20567815 synonymous SNV . 0 24 hm5C_associated_SNPs_19391 0 0 1 0 0 Nucleus 1 0.500231623278026 1 0.999536753443948 hm5C_site_20631 DeepMRMD:1;iRNA_m5C:0.999536753443948 20632 chr13 20567815 20567815 1 + A G COAD 20567813 + 20567793 20567833 41 TAAGCTCTGTGAATGATGGCCAATTAGAAAATACTGACGGG TAAGCTCTGTGAATGATGGCCAGTTAGAAAATACTGACGGG < 41bp 1 0.104919750442603 1 0.201974421739578 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZMYM2 ENSG00000121741 CDS Human protein_coding chr13:20567813 chr13:20567815 synonymous SNV . 0 23 hm5C_associated_SNPs_19392 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20632 DeepMRMD:1;iRNA_m5C:0.999536712157815 20633 chr13 20567815 20567815 1 + A G COAD 20567826 + 20567806 20567846 41 TGATGGCCAATTAGAAAATACTGACGGGCGAGATATGAACT TGATGGCCAGTTAGAAAATACTGACGGGCGAGATATGAACT < 41bp 1 0.175356610044226 1 0.123551398515701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZMYM2 ENSG00000121741 CDS Human protein_coding chr13:20567826 chr13:20567815 synonymous SNV . 0 10 hm5C_associated_SNPs_19393 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20633 DeepMRMD:1;iRNA_m5C:0.999536712157815 20634 chr10 118306811 118306811 1 + G T COAD 118306831 + 118306811 118306851 41 GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC TAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC < 41bp 1 0.671069287105849 1 0.202677756547928 experiment 0.657861425788302 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306831 chr10:118306811 stopgain 0.997 1 1 hm5C_associated_SNPs_19394 0 0 0 0 1 unknown 1 0.500231524455995 1 0.999536951088011 hm5C_site_20634 DeepMRMD:1;iRNA_m5C:0.999536951088011 20635 chr5 176468200 176468200 1 + T G COAD 176468185 + 176468165 176468205 41 AACACCCAGTGTAAGGTTTGCTGCGCCTTGCTTATTTCTGA AACACCCAGTGTAAGGTTTGCTGCGCCTTGCTTATGTCTGA < 41bp 1 0.515723323866401 1 0.104960232973099 experiment 0.968553352267198 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF346 ENSG00000113761 CDS Human protein_coding chr5:176468185 chr5:176468200 nonsynonymous SNV 0.976 3 36 hm5C_associated_SNPs_19395 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_20635 DeepMRMD:1;iRNA_m5C:0.999536712157815 20636 chr4 42020145 42020145 1 + G T COAD 42020141 + 42020121 42020161 41 TTTACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACT TTTACAGCAGAAGGTATAGGCACATAACTCAAAGCTCCACT < 41bp 1 0.36386580890573 1 0.0623792111873627 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020141 chr4:42020145 stopgain 0.771 0 25 hm5C_associated_SNPs_19396 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164392113 1 0.999536712157739 hm5C_site_20636 DeepMRMD:1;iRNA_m5C:0.999536712157739 20637 chr4 42020145 42020145 1 + G T COAD 42020143 + 42020123 42020163 41 TACAGCAGAAGGTATAGGCACAGAACTCAAAGCTCCACTTA TACAGCAGAAGGTATAGGCACATAACTCAAAGCTCCACTTA < 41bp 1 0.419502299816418 1 0.0995650291442871 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42020143 chr4:42020145 stopgain 0.771 0 23 hm5C_associated_SNPs_19397 0 0 1 0 2 Endoplasmic reticulum 1 0.500231645448726 1 0.999536709102549 hm5C_site_20637 DeepMRMD:1;iRNA_m5C:0.999536709102549 20638 chr19 2343247 2343247 1 + T C COAD 2343242 + 2343222 2343262 41 CTCCAGGATGCCCTGGGCATCGCCTTCTGCCTCTACATGCT CTCCAGGATGCCCTGGGCATCGCCTCCTGCCTCTACATGCT < 41bp 1 0.31566207179026 1 0.148010939359665 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2343242 chr19:2343247 . 0.999 3 26 hm5C_associated_SNPs_19398 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20638 DeepMRMD:1;iRNA_m5C:0.999536712157815 20639 chr2 32339825 32339825 1 + T G COAD 32339810 + 32339790 32339830 41 GGATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTA GGATCTGCAGGCCTTTCAGGCCACCATAGAGCACCGAGTTA < 41bp 1 0.0969304323284405 1 0.0487041771411896 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339810 chr2:32339825 synonymous SNV . 0 36 hm5C_associated_SNPs_19399 0 0 1 0 1 Ribosome 1 0.500231643800045 1 0.999536712399909 hm5C_site_20639 DeepMRMD:1;iRNA_m5C:0.999536712399909 20640 chr2 32339825 32339825 1 + T G COAD 32339813 + 32339793 32339833 41 TCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTACAG TCTGCAGGCCTTTCAGGCCACCATAGAGCACCGAGTTACAG < 41bp 1 0.261000719367733 1 0.0398304462432861 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339813 chr2:32339825 synonymous SNV . 0 33 hm5C_associated_SNPs_19401 0 0 1 0 1 Ribosome 1 0.500231643865397 1 0.999536712269206 hm5C_site_20640 DeepMRMD:1;iRNA_m5C:0.999536712269206 20641 chr7 135291515 135291515 1 + G T COAD 135291502 + 135291482 135291522 41 GTGATTTCTGCATTAAGGATCAGAACTTGAAAAGAAATTAG GTGATTTCTGCATTAAGGATCAGAACTTGAAAATAAATTAG < 41bp 1 0.185299620212655 1 0.526934087276459 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291502 chr7:135291515 nonsynonymous SNV 0.552 0 34 hm5C_associated_SNPs_19402 0 0 1 0 1 Cytosol 1 0.500231635876808 0.946131825447082 0.999536728246385 hm5C_site_20641 DeepMRMD:0.946131825447082;iRNA_m5C:0.999536728246385 20642 chr16 55527087 55527087 1 + G A COAD 55527074 + 55527054 55527094 41 CAGGTGTTCTCCCCAGGGGCCTCTCCTGACATTGACCTTGG CAGGTGTTCTCCCCAGGGGCCTCTCCTGACATTAACCTTGG < 41bp 1 0.0844255559824162 1 0.0999368131160736 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55527074 chr16:55527087 nonsynonymous SNV 0.430 0 34 hm5C_associated_SNPs_19403 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643922215 1 0.99953671215557 hm5C_site_20642 DeepMRMD:1;iRNA_m5C:0.99953671215557 20643 chr7 102109447 102109447 1 + G A COAD 102109445 + 102109425 102109465 41 GGCTTCTGCTGCGGGGTCATCCGAGCCCACAAGAAGGCCAT GGCTTCTGCTGCGGGGTCATCCAAGCCCACAAGAAGGCCAT < 41bp 1 0.266570044854815 1 0.756158590316772 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102109445 chr7:102109447 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_19404 0 0 1 0 1 Ribosome 1 0.500231643921093 0.487682819366456 0.999536712157815 hm5C_site_20643 DeepMRMD:0.487682819366456;iRNA_m5C:0.999536712157815 20644 chr17 60503891 60503891 1 + C T COAD 60503875 + 60503855 60503895 41 CTGGTTTAATAATGGAAGAACAGCACAAGTGTTCTTCAAAG CTGGTTTAATAATGGAAGAACAGCACAAGTGTTCTTTAAAG < 41bp 1 0.619901278868251 1 0.551840543746948 experiment 0.760197442263498 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL2A ENSG00000087995 CDS Human protein_coding chr17:60503875 chr17:60503891 nonsynonymous SNV 0.113 1 37 hm5C_associated_SNPs_19405 0 0 0 0 0 Ribosome 1 0.500231643697798 0.896318912506104 0.999536712604405 hm5C_site_20644 DeepMRMD:0.896318912506104;iRNA_m5C:0.999536712604405 20645 chr5 139889279 139889279 1 + G T COAD 139889265 + 139889245 139889285 41 AGCAGCTTCTGGAGGGTATGCAGAGGTTGGAAGAGTTCTTC AGCAGCTTCTGGAGGGTATGCAGAGGTTGGAAGATTTCTTC < 41bp 1 0.685951523104834 1 0.80791163444519 experiment 0.628096953790332 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139889265 chr5:139889279 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_19406 0 0 1 0 0 unknown 1 0.50023164392109 0.38417673110962 0.999536712157819 hm5C_site_20645 DeepMRMD:0.38417673110962;iRNA_m5C:0.999536712157819 20646 chr8 121259951 121259951 1 + G T COAD 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATATAAT < 41bp 1 0.371247175092459 1 0.0820191502571106 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259951 nonsynonymous SNV 0.973 4 38 hm5C_associated_SNPs_19407 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20646 DeepMRMD:1;iRNA_m5C:0.999536712157815 20647 chr22 40762493 40762493 1 + C T COAD 40762482 + 40762462 40762502 41 AGGTGTATCCCCTGTTAAAACCATATGAAAGCGTGATGAAG AGGTGTATCCCCTGTTAAAACCATATGAAAGTGTGATGAAG < 41bp 1 0.393452688627861 1 0.132406115531921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ADSL ENSG00000239900 CDS Human protein_coding chr22:40762482 chr22:40762493 synonymous SNV . 0 32 hm5C_associated_SNPs_19408 0 0 1 0 1 Ribosome 1 0.500231643921089 1 0.999536712157822 hm5C_site_20647 DeepMRMD:1;iRNA_m5C:0.999536712157822 20648 chr20 37662910 37662910 1 + G T COAD 37662905 + 37662885 37662925 41 CTACATGAGAGATGTGACTGCCATTGAATCGGCCTGGCTGT CTACATGAGAGATGTGACTGCCATTTAATCGGCCTGGCTGT < 41bp 1 0.0544600078275772 1 0.0557839274406433 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37662905 chr20:37662910 stopgain 0.997 1 26 hm5C_associated_SNPs_19409 0 0 1 0 1 Endoplasmic reticulum 1 0.500231648252188 1 0.999536703495624 hm5C_site_20648 DeepMRMD:1;iRNA_m5C:0.999536703495624 20649 chr12 9090431 9090431 1 + G T COAD 9090428 + 9090408 9090448 41 GCTCTTTTCCCCTATAGGGTCAAGAAGACTCTAGCCGGGGT GCTCTTTTCCCCTATAGGGTCAATAAGACTCTAGCCGGGGT < 41bp 1 0.228942603790912 1 0.160671800374985 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHC1 ENSG00000111752 CDS Human protein_coding chr12:9090428 chr12:9090431 stopgain 1.000 1 24 hm5C_associated_SNPs_19410 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20649 DeepMRMD:1;iRNA_m5C:0.999536712157815 20650 chr11 114273576 114273576 1 + A G COAD 114273562 + 114273542 114273582 41 CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGT CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCGGTTTGT < 41bp 1 0.522973506002198 1 0.12270188331604 experiment 0.954052987995604 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273562 chr11:114273576 nonsynonymous SNV 0.976 0 35 hm5C_associated_SNPs_19411 0 0 1 0 3 Cytosol 1 0.500643362793244 1 0.998713274413511 hm5C_site_20650 DeepMRMD:1;iRNA_m5C:0.998713274413511 20651 chr11 114273576 114273576 1 + A G COAD 114273563 + 114273543 114273583 41 ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGTC ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCGGTTTGTC < 41bp 1 0.162596549081644 1 0.165751606225967 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273563 chr11:114273576 nonsynonymous SNV 0.976 0 34 hm5C_associated_SNPs_19412 0 0 1 0 3 Cytosol 1 0.500231513185028 1 0.999536973629944 hm5C_site_20651 DeepMRMD:1;iRNA_m5C:0.999536973629944 20652 chr11 114273576 114273576 1 + A G COAD 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAAGATGTCGGTTTGTCATATCCCCAACATCATGTTG < 41bp 1 0.3726065424054 1 0.167359471321106 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273576 nonsynonymous SNV 0.976 0 14 hm5C_associated_SNPs_19413 0 0 1 0 3 Cytosol 1 0.500231272573866 1 0.999537454852267 hm5C_site_20652 DeepMRMD:1;iRNA_m5C:0.999537454852267 20653 chr11 114273576 114273576 1 + A G COAD 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT AGATGTCGGTTTGTCATATCCCCAACATCATGTTGGAAATT < 41bp 1 0.675109324681436 1 0.119529694318771 experiment 0.649781350637128 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273576 nonsynonymous SNV 0.976 0 8 hm5C_associated_SNPs_19414 0 0 1 0 3 Cytosol 1 0.500231643635551 1 0.999536712728899 hm5C_site_20653 DeepMRMD:1;iRNA_m5C:0.999536712728899 20654 chr11 114273576 114273576 1 + A G COAD 114273590 + 114273570 114273610 41 GATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC GATGTCGGTTTGTCATATCCCCAACATCATGTTGGAAATTC < 41bp 1 0.319738602323492 1 0.246921896934509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273590 chr11:114273576 nonsynonymous SNV 0.976 0 7 hm5C_associated_SNPs_19415 0 0 1 0 3 Cytosol 1 0.500231644163818 1 0.999536711672365 hm5C_site_20654 DeepMRMD:1;iRNA_m5C:0.999536711672365 20655 chr11 114273576 114273576 1 + A G COAD 114273594 + 114273574 114273614 41 TCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGC TCGGTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGC < 41bp 1 0.457865523908607 1 0.0931016504764557 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273594 chr11:114273576 nonsynonymous SNV 0.976 0 3 hm5C_associated_SNPs_19417 0 0 1 0 3 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_20655 DeepMRMD:1;iRNA_m5C:0.999536712157816 20656 chr20 39797439 39797439 1 + C T COAD 39797451 + 39797431 39797471 41 TACAAGGCCCAGAGGGAGGACGAGCTGACCTTCATCAAGAG TACAAGGCTCAGAGGGAGGACGAGCTGACCTTCATCAAGAG < 41bp 1 0.28721525702328 1 0.5980424284935 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39797451 chr20:39797439 synonymous SNV . 0 9 hm5C_associated_SNPs_19418 0 0 1 0 1 Cytosol 1 0.500231644006418 0.803915143013 0.999536711987165 hm5C_site_20656 DeepMRMD:0.803915143013;iRNA_m5C:0.999536711987165 20657 chr1 220964909 220964909 1 + A C COAD 220964927 + 220964907 220964947 41 TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCTAC TGCCCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCTAC < 41bp 1 0.463388345614385 1 0.118251293897629 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964927 chr1:220964909 nonsynonymous SNV 0.979 3 3 hm5C_associated_SNPs_19419 0 0 1 0 2 Ribosome 1 0.500231643219966 1 0.999536713560068 hm5C_site_20657 DeepMRMD:1;iRNA_m5C:0.999536713560068 20658 chr11 95546134 95546134 1 + C T COAD 95546139 + 95546119 95546159 41 CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGGATTCA CTTCAAGATAAGATTTGACGCTTGGAACTTGAGAGGATTCA < 41bp 1 0.459065593193087 1 0.0649937689304352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95546139 chr11:95546134 stopgain 1.000 1 16 hm5C_associated_SNPs_19421 1 0 1 0 3 Nucleus 1 0.500231643883635 1 0.999536712232731 hm5C_site_20658 DeepMRMD:1;iRNA_m5C:0.999536712232731 Mosaic variegated aneuploidy syndrome 2 Mosaic variegated aneuploidy syndrome 2 20659 chr5 128440938 128440938 1 + C A COAD 128440946 + 128440926 128440966 41 TACCCTAAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT TACCCTAAAGGTATTGGGAGCACGGTTCAAGAAATTGATTT < 41bp 1 0.602962388956561 1 0.454040825366974 experiment 0.794075222086879 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440946 chr5:128440938 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_19422 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20659 DeepMRMD:1;iRNA_m5C:0.999536712157815 20660 chr15 78841257 78841257 1 + G T COAD 78841245 + 78841225 78841265 41 AAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAAGAA AAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAATAAAAAGAA < 41bp 1 0.692030373582266 1 0.479652613401413 experiment 0.615939252835468 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78841245 chr15:78841257 stopgain 0.996 1 33 hm5C_associated_SNPs_19423 0 0 1 0 0 Ribosome 1 0.500276625730213 1 0.999446748539574 hm5C_site_20660 DeepMRMD:1;iRNA_m5C:0.999446748539574 20661 chr3 50257588 50257588 1 + C T COAD 50257570 + 50257550 50257590 41 TTGAGCTTCATCATCATTGACTGGGCCTCAGGGACCAGCCG TTGAGCTTCATCATCATTGACTGGGCCTCAGGGACCAGTCG < 41bp 1 0.581280879631893 1 0.361448287963867 experiment 0.837438240736214 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50257570 chr3:50257588 . . 0 39 hm5C_associated_SNPs_19424 0 0 1 0 1 exosome 1 0.500231643911221 1 0.999536712177559 hm5C_site_20661 DeepMRMD:1;iRNA_m5C:0.999536712177559 20662 chr15 59350594 59350594 1 + C T COAD 59350579 + 59350559 59350599 41 TACTGTAGTACCAACCACTTCTGCAAGAATGGAATCACAAG TACTGTAGTACCAACCACTTCTGCAAGAATGGAATTACAAG < 41bp 1 0.552216001219229 1 0.598207116127014 experiment 0.895567997561542 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RNF111 ENSG00000157450 CDS Human protein_coding chr15:59350579 chr15:59350594 nonsynonymous SNV 0.998 2 36 hm5C_associated_SNPs_19425 0 0 1 0 1 Ribosome 1 0.500231643966722 0.803585767745972 0.999536712066555 hm5C_site_20662 DeepMRMD:0.803585767745972;iRNA_m5C:0.999536712066555 20663 chr9 72003158 72003158 1 + G T COAD 72003140 + 72003120 72003160 41 ACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTGAGAT ACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTGATAT < 41bp 1 0.570501642615228 1 0.349725127220154 experiment 0.858996714769544 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:72003140 chr9:72003158 nonsynonymous SNV 0.031 1 39 hm5C_associated_SNPs_19426 0 0 0 0 1 cytosol 1 0.500231663207918 1 0.999536673584164 hm5C_site_20663 DeepMRMD:1;iRNA_m5C:0.999536673584164 20664 chr5 64082392 64082392 1 + T G COAD 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TCCTTTTGATGACATCATTCCAAGGGAAATGAAAAGGCTGA < 41bp 1 0.454296141351361 1 0.825393915176392 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082392 nonsynonymous SNV 0.972 1 31 hm5C_associated_SNPs_19427 0 0 1 0 2 Nucleus 1 0.500230843454822 0.349212169647216 0.999538313090356 hm5C_site_20664 DeepMRMD:0.349212169647216;iRNA_m5C:0.999538313090356 20665 chr11 64054336 64054336 1 + A C COAD 64054320 + 64054300 64054340 41 CCCGTCTGCCTGCAGTTCTTCACCTTGACGCTTATGAACCT CCCGTCTGCCTGCAGTTCTTCACCTTGACGCTTATGCACCT < 41bp 1 0.352578046187504 1 0.27825129032135 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPR137 ENSG00000173264 CDS Human protein_coding chr11:64054320 chr11:64054336 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_19428 0 0 1 0 1 Cytosol 1 0.500231644022127 1 0.999536711955746 hm5C_site_20665 DeepMRMD:1;iRNA_m5C:0.999536711955746 20666 chr16 11066819 11066819 1 + A G COAD 11066834 + 11066814 11066854 41 GCACTACATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA GCACTGCATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA < 41bp 1 0.411952682490639 1 0.0276484787464142 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11066834 chr16:11066819 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_19429 0 0 1 0 2 Cytosol 1 0.500231814302223 1 0.999536371395555 hm5C_site_20666 DeepMRMD:1;iRNA_m5C:0.999536371395555 20667 chr2 100007156 100007156 1 + A C COAD 100007146 + 100007126 100007166 41 AGGCCTCCTGTTACCTCCTCCTATGAAGGAATTACGAGTGA AGGCCTCCTGTTACCTCCTCCTATGAAGGACTTACGAGTGA < 41bp 1 0.326589613275862 1 0.216611117124557 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100007146 chr2:100007156 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_19431 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20667 DeepMRMD:1;iRNA_m5C:0.999536712157815 20668 chr1 27630278 27630278 1 + C A COAD 27630272 + 27630252 27630292 41 ACCACGGATATCAAAGAGGCCAATTTCTTTGGCAGGTCCGA ACCACGGATATCAAAGAGGCCAATTTATTTGGCAGGTCCGA < 41bp 1 0.0639708565971758 1 0.148474901914597 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27630272 chr1:27630278 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_19432 0 0 0 1 1 Cytosol 1 0.500231643921212 1 0.999536712157577 hm5C_site_20668 DeepMRMD:1;iRNA_m5C:0.999536712157577 20669 chr1 12061554 12061554 1 + T C COAD 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCCGGGGACCGCATCTTCTTTGTGCCTGCTAAGGA < 41bp 1 0.31657386268396 1 0.0713164508342743 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061554 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_19433 0 0 1 0 2 Ribosome 1 0.500231643921071 1 0.999536712157857 hm5C_site_20669 DeepMRMD:1;iRNA_m5C:0.999536712157857 20670 chr15 72855836 72855836 1 + A C COAD 72855834 + 72855814 72855854 41 TTCGCTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT TTCGCTGCAAATGTGGGCGCCACTTTTGGTAAGCAAGTGAT < 41bp 1 0.0910392318774425 1 0.161845207214355 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72855834 chr15:72855836 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_19434 0 0 1 0 1 Cytosol 1 0.500231643920565 1 0.99953671215887 hm5C_site_20670 DeepMRMD:1;iRNA_m5C:0.99953671215887 20671 chr12 53671311 53671311 1 + A G COAD 53671316 + 53671296 53671336 41 GAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT GAGGAATTTGAAGTCGATGACCTGAACTATGAAGATAAACT < 41bp 1 0.0707197509883705 1 0.0586913228034973 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671316 chr12:53671311 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_19435 0 0 1 0 1 Nucleus 1 0.500253381765165 1 0.99949323646967 hm5C_site_20671 DeepMRMD:1;iRNA_m5C:0.99949323646967 20672 chr4 126337719 126337719 1 + G T COAD 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGTAACACATAGTCTGGATCGGGAAACAAAAGAGCGCTTT < 41bp 1 0.622321446556297 1 0.920305967330933 experiment 0.755357106887407 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337719 nonsynonymous SNV 0.916 2 11 hm5C_associated_SNPs_19436 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643782808 0.159388065338134 0.999536712434384 hm5C_site_20672 DeepMRMD:0.159388065338134;iRNA_m5C:0.999536712434384 20673 chr17 28754463 28754463 1 + G A COAD 28754477 + 28754457 28754497 41 TGAACCGAAATTTCCCAGACCAGTTTGTTCAGATCACAGAT TGAACCAAAATTTCCCAGACCAGTTTGTTCAGATCACAGAT < 41bp 1 0.122158153942423 1 0.0711123943328857 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28754477 chr17:28754463 nonsynonymous SNV 0.992 4 7 hm5C_associated_SNPs_19437 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_20673 DeepMRMD:1;iRNA_m5C:0.999536712157814 20674 chr5 6746337 6746337 1 + G T COAD 6746347 + 6746327 6746367 41 TTGCATCCAAGAATTGATGCCCGGAGAGCTGATGAAAACCT TTGCATCCAATAATTGATGCCCGGAGAGCTGATGAAAACCT < 41bp 1 0.378847637846471 1 0.295552372932434 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6746347 chr5:6746337 nonsynonymous SNV 0.999 3 11 hm5C_associated_SNPs_19438 0 0 1 0 1 Nucleus 1 0.499639582668794 1 1 hm5C_site_20674 DeepMRMD:1;iRNA_m5C:1 20675 chr13 24823801 24823801 1 + A G COAD 24823790 + 24823770 24823810 41 TCCTGAAGACTCGGTTGCTGCAGACCCCCAGAAGGAAGACC TCCTGAAGACTCGGTTGCTGCAGACCCCCAGGAGGAAGACC < 41bp 1 0.147621297909011 1 0.451532512903214 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SPATA13 ENSG00000182957 CDS Human protein_coding chr13:24823790 chr13:24823801 nonsynonymous SNV 0.022 0 32 hm5C_associated_SNPs_19439 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20675 DeepMRMD:1;iRNA_m5C:0.999536712157815 20676 chr8 26227835 26227835 1 + A C COAD 26227822 + 26227802 26227842 41 ATGAAATAAGTGTTGACAGCCTAGACTTCAATAAGAAAATC ATGAAATAAGTGTTGACAGCCTAGACTTCAATACGAAAATC < 41bp 1 0.66154483855453 1 0.246000736951828 experiment 0.676910322890941 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26227822 chr8:26227835 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_19440 0 0 1 0 0 Cytosol 1 0.50023163861462 1 0.99953672277076 hm5C_site_20676 DeepMRMD:1;iRNA_m5C:0.99953672277076 20677 chr14 37754636 37754636 1 + G T COAD 37754619 + 37754599 37754639 41 GGAGAGAGATGAAGCAATTGCACGAGCCAAGCATATGGAAA GGAGAGAGATGAAGCAATTGCACGAGCCAAGCATATGTAAA < 41bp 1 0.497936324337331 1 0.756223440170288 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37754619 chr14:37754636 stopgain 1.000 1 38 hm5C_associated_SNPs_19441 0 0 1 0 0 chromatin 1 0.500231805222353 0.487553119659424 0.999536389555294 hm5C_site_20677 DeepMRMD:0.487553119659424;iRNA_m5C:0.999536389555294 20678 chr1 39775920 39775920 1 + C T COAD 39775933 + 39775913 39775953 41 CTAGCTTCGATCCTCAGCACCAGGGGAGTGCCATCAGATTA CTAGCTTTGATCCTCAGCACCAGGGGAGTGCCATCAGATTA < 41bp 1 0.236849168115583 1 0.74539977312088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39775933 chr1:39775920 stopgain 0.542 0 8 hm5C_associated_SNPs_19442 0 0 1 0 1 Endoplasmic reticulum 1 0.500231651390132 0.50920045375824 0.999536697219735 hm5C_site_20678 DeepMRMD:0.50920045375824;iRNA_m5C:0.999536697219735 20679 chr3 39104659 39104659 1 + T C COAD 39104645 + 39104625 39104665 41 CTTTTCACAGCCGGTCGAGACTCTATCATAAGAATATGGAG CTTTTCACAGCCGGTCGAGACTCTATCATAAGAACATGGAG < 41bp 1 0.576342021139748 1 0.919161438941956 experiment 0.847315957720503 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39104645 chr3:39104659 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_19443 0 0 1 0 1 Ribosome 1 0.500231643921094 0.161677122116088 0.999536712157812 hm5C_site_20679 DeepMRMD:0.161677122116088;iRNA_m5C:0.999536712157812 20680 chr4 146463818 146463818 1 + C T COAD 146463820 + 146463800 146463840 41 TGGACACAAACATGATGGCGCCTCCCCTGCCCTCAGAAATC TGGACACAAACATGATGGTGCCTCCCCTGCCCTCAGAAATC < 41bp 1 0.018871890328085 1 0.0569944977760315 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463820 chr4:146463818 nonsynonymous SNV 0.973 1 19 hm5C_associated_SNPs_19444 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643767394 1 0.999536712465211 hm5C_site_20680 DeepMRMD:1;iRNA_m5C:0.999536712465211 20681 chr1 155255670 155255670 1 + G A COAD 155255657 + 155255637 155255677 41 TCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAGATGTACT TCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAAATGTACT < 41bp 1 0.301458072869858 1 0.322904348373413 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HCN3 ENSG00000143630 CDS Human protein_coding chr1:155255657 chr1:155255670 synonymous SNV . 0 34 hm5C_associated_SNPs_19445 0 0 0 0 1 chromatin 1 0.500231663695826 1 0.999536672608347 hm5C_site_20681 DeepMRMD:1;iRNA_m5C:0.999536672608347 20682 chr7 142460364 142460364 1 + T C COAD 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCA < 41bp 1 0.0397227903326115 1 0.182513356208801 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460364 synonymous SNV . 0 40 hm5C_associated_SNPs_19446 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20682 DeepMRMD:1;iRNA_m5C:0.999536712157815 20683 chr7 142460364 142460364 1 + T C COAD 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCAC < 41bp 1 0.274928024962448 1 0.489937663078308 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460364 synonymous SNV . 0 39 hm5C_associated_SNPs_19447 0 0 0 0 2 Cytosol 1 0.500257671463212 1 0.999484657073576 hm5C_site_20683 DeepMRMD:1;iRNA_m5C:0.999484657073576 20684 chr7 142460364 142460364 1 + T C COAD 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCACCA < 41bp 1 0.0247478794950498 1 0.0949923396110535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460364 synonymous SNV . 0 37 hm5C_associated_SNPs_19448 0 0 0 0 2 Cytosol 1 0.500231644414117 1 0.999536711171766 hm5C_site_20684 DeepMRMD:1;iRNA_m5C:0.999536711171766 20685 chr7 142460364 142460364 1 + T C COAD 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCACCAG < 41bp 1 0.270980433197384 1 0.247778505086899 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460364 synonymous SNV . 0 36 hm5C_associated_SNPs_19449 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20685 DeepMRMD:1;iRNA_m5C:0.999536712157815 20686 chr7 142460364 142460364 1 + T C COAD 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATCACCAGCAA < 41bp 1 0.363265654472155 1 0.551122605800629 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460364 synonymous SNV . 0 33 hm5C_associated_SNPs_19450 0 0 0 0 2 Cytosol 1 0.500231643921166 0.897754788398742 0.999536712157667 hm5C_site_20686 DeepMRMD:0.897754788398742;iRNA_m5C:0.999536712157667 20687 chr7 142460364 142460364 1 + T C COAD 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCTACCCTGGAAAGATCACCAGCAAC < 41bp 1 0.280607419174325 1 0.523404240608215 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460364 synonymous SNV . 0 32 hm5C_associated_SNPs_19451 0 0 0 0 2 Cytosol 1 0.500231643921092 0.95319151878357 0.999536712157815 hm5C_site_20687 DeepMRMD:0.95319151878357;iRNA_m5C:0.999536712157815 20688 chr7 142460364 142460364 1 + T C COAD 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATCACCAGCAACATGTTCTGTGTGG < 41bp 1 0.168305226137808 1 0.148340165615082 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460364 synonymous SNV . 0 19 hm5C_associated_SNPs_19452 0 0 0 0 2 Cytosol 1 0.500231643920085 1 0.99953671215983 hm5C_site_20688 DeepMRMD:1;iRNA_m5C:0.99953671215983 20689 chr7 142460364 142460364 1 + T C COAD 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATCACCAGCAACATGTTCTGTGTGGG < 41bp 1 0.558886087241536 1 0.555880486965179 experiment 0.882227825516929 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460364 synonymous SNV . 0 18 hm5C_associated_SNPs_19453 0 0 0 0 2 Cytosol 1 0.50023163530872 0.888239026069642 0.999536729382561 hm5C_site_20689 DeepMRMD:0.888239026069642;iRNA_m5C:0.999536729382561 20690 chr7 142460364 142460364 1 + T C COAD 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATCACCAGCAACATGTTCTGTGTGGGCTT < 41bp 1 0.484365498735542 1 0.524269998073578 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460364 synonymous SNV . 0 15 hm5C_associated_SNPs_19454 0 0 0 0 2 Cytosol 1 0.500231643921092 0.951460003852844 0.999536712157815 hm5C_site_20690 DeepMRMD:0.951460003852844;iRNA_m5C:0.999536712157815 20691 chr7 142460364 142460364 1 + T C COAD 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATCACCAGCAACATGTTCTGTGTGGGCTTCCT < 41bp 1 0.263218579021508 1 0.0682689249515533 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460364 synonymous SNV . 0 12 hm5C_associated_SNPs_19455 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20691 DeepMRMD:1;iRNA_m5C:0.999536712157815 20692 chr7 142460364 142460364 1 + T C COAD 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATCACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG < 41bp 1 0.32923412137661 1 0.358394086360931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460364 synonymous SNV . 0 6 hm5C_associated_SNPs_19456 0 0 0 0 2 Cytosol 1 0.500231617287515 1 0.99953676542497 hm5C_site_20692 DeepMRMD:1;iRNA_m5C:0.99953676542497 20693 chrX 100880741 100880741 1 + G T COAD 100880745 + 100880725 100880765 41 TTCAGCGGGAAATGAAGAAACCAAACTTCAGGTTCTGAAAC TTCAGCGGGAAATGAATAAACCAAACTTCAGGTTCTGAAAC < 41bp 1 0.507542267838577 1 0.0513339638710022 experiment 0.984915464322846 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880745 chrX:100880741 stopgain 1.000 0 17 hm5C_associated_SNPs_19457 0 0 1 0 0 Endoplasmic reticulum 1 0.500231697117561 1 0.999536605764877 hm5C_site_20693 DeepMRMD:1;iRNA_m5C:0.999536605764877 20694 chrX 100880741 100880741 1 + G T COAD 100880746 + 100880726 100880766 41 TCAGCGGGAAATGAAGAAACCAAACTTCAGGTTCTGAAACT TCAGCGGGAAATGAATAAACCAAACTTCAGGTTCTGAAACT < 41bp 1 0.290482033058882 1 0.243973404169083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880746 chrX:100880741 stopgain 1.000 0 16 hm5C_associated_SNPs_19458 0 0 1 0 0 Endoplasmic reticulum 1 0.5002316438316 1 0.9995367123368 hm5C_site_20694 DeepMRMD:1;iRNA_m5C:0.9995367123368 20695 chrX 100880741 100880741 1 + G T COAD 100880750 + 100880730 100880770 41 CGGGAAATGAAGAAACCAAACTTCAGGTTCTGAAACTCCTT CGGGAAATGAATAAACCAAACTTCAGGTTCTGAAACTCCTT < 41bp 1 0.503169318543469 1 0.169223427772522 experiment 0.993661362913062 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880750 chrX:100880741 stopgain 1.000 0 12 hm5C_associated_SNPs_19459 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921173 1 0.999536712157655 hm5C_site_20695 DeepMRMD:1;iRNA_m5C:0.999536712157655 20696 chrX 100880741 100880741 1 + G T COAD 100880753 + 100880733 100880773 41 GAAATGAAGAAACCAAACTTCAGGTTCTGAAACTCCTTTTG GAAATGAATAAACCAAACTTCAGGTTCTGAAACTCCTTTTG < 41bp 1 0.636526063359437 1 0.473189771175385 experiment 0.726947873281127 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880753 chrX:100880741 stopgain 1.000 0 9 hm5C_associated_SNPs_19460 0 0 1 0 0 Endoplasmic reticulum 1 0.500231639484144 1 0.999536721031712 hm5C_site_20696 DeepMRMD:1;iRNA_m5C:0.999536721031712 20697 chr2 118579619 118579619 1 + T C COAD 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCATTGTGGCCACACCAGGCCGCCTGCTGGACCAT < 41bp 1 0.544471557385138 1 0.143178582191467 experiment 0.911056885229725 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579619 synonymous SNV . 0 29 hm5C_associated_SNPs_19461 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20697 DeepMRMD:1;iRNA_m5C:0.999536712157815 20698 chr12 57892319 57892319 1 + A C COAD 57892311 + 57892291 57892331 41 GGACTAACCCCCCAGGAGATCTGCGACAAGTACCACATCAT GGACTAACCCCCCAGGAGATCTGCGACACGTACCACATCAT < 41bp 1 0.608133140404908 1 0.291155636310577 experiment 0.783733719190184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57892311 chr12:57892319 nonsynonymous SNV 0.969 4 29 hm5C_associated_SNPs_19462 0 0 1 0 1 Cytosol 1 0.500231560003742 1 0.999536879992516 hm5C_site_20698 DeepMRMD:1;iRNA_m5C:0.999536879992516 20699 chr6 149691192 149691192 1 + T C COAD 149691182 + 149691162 149691202 41 TTCAGGTTTTACATGACCTGCGACAAAAATTCCCTGAAGTA TTCAGGTTTTACATGACCTGCGACAAAAATCCCCTGAAGTA < 41bp 1 0.571800780560525 1 0.148864388465881 experiment 0.856398438878949 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAB2 ENSG00000055208 CDS Human protein_coding chr6:149691182 chr6:149691192 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_19463 0 0 1 0 1 Cytosol 1 0.500231643921096 1 0.999536712157809 hm5C_site_20699 DeepMRMD:1;iRNA_m5C:0.999536712157809 20700 chr1 22307592 22307592 1 + G A COAD 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCAAGC < 41bp 1 0.569947548139683 1 0.122711390256882 experiment 0.860104903720633 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307592 nonsynonymous SNV 0.479 2 38 hm5C_associated_SNPs_19464 0 0 0 0 2 unknown 1 0.500231643880508 1 0.999536712238983 hm5C_site_20700 DeepMRMD:1;iRNA_m5C:0.999536712238983 20701 chr1 22307592 22307592 1 + G A COAD 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GACCGTGCTGTGAAGGAGGGCCCCAAGCAGGTGATCCCCAT < 41bp 1 0.344613465195194 1 0.15925070643425 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307592 nonsynonymous SNV 0.479 2 25 hm5C_associated_SNPs_19465 0 0 0 0 2 unknown 1 0.500277177447748 1 0.999445645104503 hm5C_site_20701 DeepMRMD:1;iRNA_m5C:0.999445645104503 20702 chr1 22307592 22307592 1 + G A COAD 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCGTGCTGTGAAGGAGGGCCCCAAGCAGGTGATCCCCATC < 41bp 1 0.332295472626908 1 0.243320286273956 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307592 nonsynonymous SNV 0.479 2 24 hm5C_associated_SNPs_19466 0 0 0 0 2 unknown 1 0.500231644332634 1 0.999536711334732 hm5C_site_20702 DeepMRMD:1;iRNA_m5C:0.999536711334732 20703 chr1 22307592 22307592 1 + G A COAD 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCGTGCTGTGAAGGAGGGCCCCAAGCAGGTGATCCCCATCA < 41bp 1 0.280554529719657 1 0.0675018131732941 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307592 nonsynonymous SNV 0.479 2 23 hm5C_associated_SNPs_19467 0 0 0 0 2 unknown 1 0.500252496842728 1 0.999495006314545 hm5C_site_20703 DeepMRMD:1;iRNA_m5C:0.999495006314545 20704 chr1 22307592 22307592 1 + G A COAD 22307591 + 22307571 22307611 41 CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CGTGCTGTGAAGGAGGGCCCCAAGCAGGTGATCCCCATCAA < 41bp 1 0.541679029227593 1 0.0930134057998657 experiment 0.916641941544814 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307591 chr1:22307592 nonsynonymous SNV 0.479 2 22 hm5C_associated_SNPs_19468 0 0 0 0 2 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_20704 DeepMRMD:1;iRNA_m5C:0.999536712157815 20705 chr1 22307592 22307592 1 + G A COAD 22307603 + 22307583 22307623 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCT GAGGGCCCCAAGCAGGTGATCCCCATCAACTCTGGGGACCT < 41bp 1 0.364014989368427 1 0.0581323504447937 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307603 chr1:22307592 nonsynonymous SNV 0.479 2 10 hm5C_associated_SNPs_19469 0 0 0 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_20705 DeepMRMD:1;iRNA_m5C:0.999536712157815 20706 chr1 22307592 22307592 1 + G A COAD 22307604 + 22307584 22307624 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTC AGGGCCCCAAGCAGGTGATCCCCATCAACTCTGGGGACCTC < 41bp 1 0.0688194708473813 1 0.0717503428459167 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307604 chr1:22307592 nonsynonymous SNV 0.479 2 9 hm5C_associated_SNPs_19470 0 0 0 0 2 unknown 1 0.500231643917848 1 0.999536712164305 hm5C_site_20706 DeepMRMD:1;iRNA_m5C:0.999536712164305 20707 chr1 22307592 22307592 1 + G A COAD 22307605 + 22307585 22307625 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCT GGGCCCCAAGCAGGTGATCCCCATCAACTCTGGGGACCTCT < 41bp 1 0.0327977472849822 1 0.121854931116104 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307605 chr1:22307592 nonsynonymous SNV 0.479 2 8 hm5C_associated_SNPs_19471 0 0 0 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_20707 DeepMRMD:1;iRNA_m5C:0.999536712157815 20708 chr1 22307592 22307592 1 + G A COAD 22307606 + 22307586 22307626 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCTT GGCCCCAAGCAGGTGATCCCCATCAACTCTGGGGACCTCTT < 41bp 1 0.314395344756747 1 0.340014010667801 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307606 chr1:22307592 nonsynonymous SNV 0.479 2 7 hm5C_associated_SNPs_19472 0 0 0 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_20708 DeepMRMD:1;iRNA_m5C:0.999536712157815 20709 chr1 22307592 22307592 1 + G A COAD 22307612 + 22307592 22307632 41 GAGCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCA AAGCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCA < 41bp 1 0.527070713893492 1 0.712099254131317 experiment 0.945858572213016 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307612 chr1:22307592 nonsynonymous SNV 0.479 2 1 hm5C_associated_SNPs_19473 0 0 0 0 2 unknown 1 0.500231643936872 0.575801491737366 0.999536712126257 hm5C_site_20709 DeepMRMD:0.575801491737366;iRNA_m5C:0.999536712126257 20710 chr3 126736356 126736356 1 + G A COAD 126736355 + 126736335 126736375 41 GCCCACCAGAGCTGGGGGAGCGGCCGGATGAGCTGGGCTTC GCCCACCAGAGCTGGGGGAGCAGCCGGATGAGCTGGGCTTC < 41bp 1 0.332063942315267 1 0.86019241809845 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126736355 chr3:126736356 nonsynonymous SNV 0.825 1 22 hm5C_associated_SNPs_19474 0 0 1 0 1 Ribosome 1 0.50023164391127 0.2796151638031 0.999536712177461 hm5C_site_20710 DeepMRMD:0.2796151638031;iRNA_m5C:0.999536712177461 20711 chr2 170804118 170804118 1 + A T COAD 170804126 + 170804106 170804146 41 TTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGT TTAGTGTCAAACTTGCGACACTTTATAAACTATGTTAGAGT < 41bp 1 0.0730556047090031 1 0.0820217132568359 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170804126 chr2:170804118 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_19475 0 0 0 1 1 Cytosol 1 0.500237306604724 1 0.999525386790553 hm5C_site_20711 DeepMRMD:1;iRNA_m5C:0.999525386790553 20712 chr7 150725664 150725664 1 + C T COAD 150725672 + 150725652 150725692 41 GCAGGCTGCTACCGCCCCTCCGCTTCCAGACATTCTCAGCT GCAGGCTGCTACTGCCCCTCCGCTTCCAGACATTCTCAGCT < 41bp 1 0.133790267126984 1 0.319047689437866 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150725672 chr7:150725664 nonsynonymous SNV 0.001 1 13 hm5C_associated_SNPs_19476 0 0 1 0 1 Ribosome 1 0.500231646598772 1 0.999536706802457 hm5C_site_20712 DeepMRMD:1;iRNA_m5C:0.999536706802457 20713 chr17 71239086 71239086 1 + C T COAD 71239105 + 71239085 71239125 41 ACGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG ATGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG < 41bp 1 0.36517298116137 1 0.0284791886806488 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239105 chr17:71239086 nonsynonymous SNV 0.812 3 2 hm5C_associated_SNPs_19477 0 0 1 0 2 chromatin 1 0.500231643680265 1 0.999536712639471 hm5C_site_20713 DeepMRMD:1;iRNA_m5C:0.999536712639471 20714 chr12 6618894 6618894 1 + G A COAD 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT ACCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT < 41bp 1 0.126159840663052 1 0.130006164312363 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618894 nonsynonymous SNV 0.993 1 1 hm5C_associated_SNPs_19478 0 0 1 0 2 Nucleus 1 0.500231631286406 1 0.999536737427189 hm5C_site_20714 DeepMRMD:1;iRNA_m5C:0.999536737427189 20715 chr7 155532685 155532685 1 + C T COAD 155532698 + 155532678 155532718 41 CAGCAGCCGGATGCAGTGCCCCCAGCGCCAGGGGCTCCGGC CAGCAGCTGGATGCAGTGCCCCCAGCGCCAGGGGCTCCGGC < 41bp 1 0.300375792304171 1 0.320761442184448 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM33 ENSG00000184863 CDS Human protein_coding chr7:155532698 chr7:155532685 nonsynonymous SNV 0.880 4 8 hm5C_associated_SNPs_19479 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_20715 DeepMRMD:1;iRNA_m5C:0.999536712157816 20716 chr19 1360942 1360942 1 + G C COAD 1360960 + 1360940 1360980 41 CAGCACCGCCAGGCTGGGCCCGCCTCCCTCCCACGCCTCTG CACCACCGCCAGGCTGGGCCCGCCTCCCTCCCACGCCTCTG < 41bp 1 0.431009185904204 1 0.228221088647842 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MUM1 ENSG00000160953 CDS Human protein_coding chr19:1360960 chr19:1360942 nonsynonymous SNV 0.010 0 3 hm5C_associated_SNPs_19480 0 0 1 0 0 Cytosol 1 0.500231644337781 1 0.999536711324438 hm5C_site_20716 DeepMRMD:1;iRNA_m5C:0.999536711324438 20717 chr22 32445969 32445969 1 + T C COAD 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCCTCCTGGCAGGCCGAAGTATGGT < 41bp 1 0.281131398267245 1 0.410694390535355 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445969 nonsynonymous SNV 0.999 3 19 hm5C_associated_SNPs_19481 0 0 0 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_20717 DeepMRMD:1;iRNA_m5C:0.999536712157814 20718 chr9 117063988 117063988 1 + C A COAD 117063993 + 117063973 117064013 41 CCCCAGAGGGCGGCCCGGCCCCCCGGTAGGTAACTGAGTGC CCCCAGAGGGCGGCCAGGCCCCCCGGTAGGTAACTGAGTGC < 41bp 1 0.408132368821325 1 0.220725566148758 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117063993 chr9:117063988 synonymous SNV . 0 16 hm5C_associated_SNPs_19482 0 0 1 0 1 Nucleus 1 0.500231643921099 1 0.999536712157802 hm5C_site_20718 DeepMRMD:1;iRNA_m5C:0.999536712157802 20719 chr16 57714236 57714236 1 + G A COAD 57714235 + 57714215 57714255 41 GAGGTCAGACCTGAGGGGACCGTGTGCTGCTGTGACCACCT GAGGTCAGACCTGAGGGGACCATGTGCTGCTGTGACCACCT < 41bp 1 0.319141341760212 1 0.10656726360321 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714235 chr16:57714236 nonsynonymous SNV 0.007 3 22 hm5C_associated_SNPs_19483 0 0 0 0 2 Nucleus 1 0.500231643921183 1 0.999536712157633 hm5C_site_20719 DeepMRMD:1;iRNA_m5C:0.999536712157633 20720 chr17 40840916 40840916 1 + A T COAD 40840909 + 40840889 40840929 41 TCCAGGTTGTCCCAAGCCAGCCAGTCGATGGGACTGCCACT TCCAGGTTGTCCCAAGCCAGCCAGTCGTTGGGACTGCCACT < 41bp 1 0.146213843745973 1 0.0960389077663422 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40840909 chr17:40840916 synonymous SNV . 0 28 hm5C_associated_SNPs_19484 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20720 DeepMRMD:1;iRNA_m5C:0.999536712157815 20721 chr15 101448629 101448629 1 + G A COAD 101448616 + 101448596 101448636 41 CTTCCATTCTTTTCTAGGATCAACTGCTACAACGCCCTCTA CTTCCATTCTTTTCTAGGATCAACTGCTACAACACCCTCTA < 41bp 1 0.325845069978609 1 0.0750451683998108 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101448616 chr15:101448629 nonsynonymous SNV 0.223 3 34 hm5C_associated_SNPs_19485 0 0 0 0 2 Nucleus 1 0.500231722255735 1 0.99953655548853 hm5C_site_20721 DeepMRMD:1;iRNA_m5C:0.99953655548853 20722 chr14 71434934 71434934 1 + G A COAD 71434922 + 71434902 71434942 41 GTCACGTTTTCAGATTGGATCTGGTTCCTCGCGTCTTGGAA GTCACGTTTTCAGATTGGATCTGGTTCCTCGCATCTTGGAA < 41bp 1 0.15515746546452 1 0.403951704502106 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71434922 chr14:71434934 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_19486 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164392129 1 0.99953671215742 hm5C_site_20722 DeepMRMD:1;iRNA_m5C:0.99953671215742 20723 chr17 47119662 47119662 1 + G A COAD 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATCAAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA < 41bp 1 0.124611040691689 1 0.2184057533741 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119662 nonsynonymous SNV 0.995 3 5 hm5C_associated_SNPs_19487 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20723 DeepMRMD:1;iRNA_m5C:0.999536712157815 20724 chr17 47119662 47119662 1 + G A COAD 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATCAAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA < 41bp 1 0.338444754269074 1 0.296951651573181 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119662 nonsynonymous SNV 0.995 3 4 hm5C_associated_SNPs_19488 0 0 1 0 1 Ribosome 1 0.500231643905494 1 0.999536712189011 hm5C_site_20724 DeepMRMD:1;iRNA_m5C:0.999536712189011 20725 chrX 21874824 21874824 1 + C T COAD 21874808 + 21874788 21874828 41 GCAGCCGCTCTTCACGAACACGGGCTATGGCGACCACGACC GCAGCCGCTCTTCACGAACACGGGCTATGGCGACCATGACC < 41bp 1 0.615602720721418 1 0.680964827537537 experiment 0.768794558557164 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YY2 ENSG00000230797 CDS Human protein_coding chrX:21874808 chrX:21874824 synonymous SNV . 0 37 hm5C_associated_SNPs_19489 0 0 0 0 0 exosome 1 0.500231639252221 0.638070344924926 0.999536721495558 hm5C_site_20725 DeepMRMD:0.638070344924926;iRNA_m5C:0.999536721495558 20726 chr16 16208700 16208700 1 + C T COAD 16208711 + 16208691 16208731 41 GTGGACCTGCTGCACAGCATCCTGCGGTCACCCATGAGCTT GTGGACCTGTTGCACAGCATCCTGCGGTCACCCATGAGCTT < 41bp 1 0.136145540082079 1 0.182287395000458 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16208711 chr16:16208700 synonymous SNV . 0 10 hm5C_associated_SNPs_19490 0 0 1 0 0 Mitochondrion 1 0.500231643919483 1 0.999536712161033 hm5C_site_20726 DeepMRMD:1;iRNA_m5C:0.999536712161033 20727 chr17 55183946 55183946 1 + G A COAD 55183945 + 55183925 55183965 41 CGGTTGGCAAGGTTGCAGGTCGTGTGTGTCAGGCCAGTCAG CGGTTGGCAAGGTTGCAGGTCATGTGTGTCAGGCCAGTCAG < 41bp 1 0.448118668221048 1 0.024834543466568 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55183945 chr17:55183946 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_19491 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643919332 1 0.999536712161335 hm5C_site_20727 DeepMRMD:1;iRNA_m5C:0.999536712161335 20728 chr17 55183946 55183946 1 + G A COAD 55183959 + 55183939 55183979 41 GCAGGTCGTGTGTGTCAGGCCAGTCAGCTCCAAGGGCAGAA GCAGGTCATGTGTGTCAGGCCAGTCAGCTCCAAGGGCAGAA < 41bp 1 0.193316120917416 1 0.0421672463417053 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55183959 chr17:55183946 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_19492 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643855036 1 0.999536712289929 hm5C_site_20728 DeepMRMD:1;iRNA_m5C:0.999536712289929 20729 chr19 18543839 18543839 1 + G A COAD 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATCGGGCAGGGCACCGGCAGGGCTAATGTGAGTG < 41bp 1 0.172299327982922 1 0.148181319236755 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543839 nonsynonymous SNV 0.136 0 20 hm5C_associated_SNPs_19493 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20729 DeepMRMD:1;iRNA_m5C:0.999536712157815 20730 chr22 23523632 23523632 1 + G A COAD 23523630 + 23523610 23523650 41 AGGTCCAACTTCGAGCGGATCCGCAAGGGCCATGGCCAGCC AGGTCCAACTTCGAGCGGATCCACAAGGGCCATGGCCAGCC < 41bp 1 0.410660908326438 1 0.0528194308280945 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23523630 chr22:23523632 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_19495 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20730 DeepMRMD:1;iRNA_m5C:0.999536712157815 20731 chr5 102345565 102345565 1 + C T COAD 102345555 + 102345535 102345575 41 GGGGAAATTATAGACATCTTCAAGCCAGTGCGCAAGGTATT GGGGAAATTATAGACATCTTCAAGCCAGTGTGCAAGGTATT < 41bp 1 0.211847969336389 1 0.26028910279274 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102345555 chr5:102345565 nonsynonymous SNV 0.902 4 31 hm5C_associated_SNPs_19496 0 0 0 0 1 Ribosome 1 0.500231981734816 1 0.999536036530368 hm5C_site_20731 DeepMRMD:1;iRNA_m5C:0.999536036530368 20732 chr1 110171400 110171400 1 + C T COAD 110171392 + 110171372 110171412 41 CATGCACCGCGTGCACTCCCCCAACGTGCGCTGGCTGGTGC CATGCACCGCGTGCACTCCCCCAACGTGTGCTGGCTGGTGC < 41bp 1 0.216588543609584 1 0.378523826599121 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110171392 chr1:110171400 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_19497 0 0 0 0 1 Cytosol 1 0.500229580292296 1 0.999540839415409 hm5C_site_20732 DeepMRMD:1;iRNA_m5C:0.999540839415409 20733 chr20 42341721 42341721 1 + C T COAD 42341738 + 42341718 42341758 41 TGTCCACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTG TGTTCACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTG < 41bp 1 0.0876228817810876 1 0.110028773546219 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341738 chr20:42341721 nonsynonymous SNV 0.781 0 4 hm5C_associated_SNPs_19498 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20733 DeepMRMD:1;iRNA_m5C:0.999536712157815 20734 chr11 44092823 44092823 1 + C T COAD 44092826 + 44092806 44092846 41 GGCATCATTAACTTGGGCACCAGTGAGAACAAACTCTGCTT GGCATCATTAACTTGGGTACCAGTGAGAACAAACTCTGCTT < 41bp 1 0.486265038557209 1 0.655535638332367 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACCS ENSG00000110455 CDS Human protein_coding chr11:44092826 chr11:44092823 synonymous SNV . 0 18 hm5C_associated_SNPs_19499 0 0 1 0 2 chromatin 1 0.500231643921093 0.688928723335266 0.999536712157813 hm5C_site_20734 DeepMRMD:0.688928723335266;iRNA_m5C:0.999536712157813 20735 chr5 10411478 10411478 1 + A G COAD 10411473 + 10411453 10411493 41 ATTCTTATTTATTGGGAGACCAGGAAGAAAATGAAAACAGT ATTCTTATTTATTGGGAGACCAGGAGGAAAATGAAAACAGT < 41bp 1 0.673420865754575 1 0.712770342826843 experiment 0.653158268490849 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10411473 chr5:10411478 synonymous SNV . 0 26 hm5C_associated_SNPs_19500 0 0 1 0 1 Nucleus 1 0.50023157930138 0.574459314346314 0.999536841397241 hm5C_site_20735 DeepMRMD:0.574459314346314;iRNA_m5C:0.999536841397241 20736 chr19 12734580 12734580 1 + T C COAD 12734581 + 12734561 12734601 41 GTGGGCTCTGCTGGCTCCTTCACAGAAGAAACTCTACAGAG GTGGGCTCTGCTGGCTCCTCCACAGAAGAAACTCTACAGAG < 41bp 1 0.599528875486703 1 0.730029225349426 experiment 0.800942249026594 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF791 ENSG00000173875 CDS Human protein_coding chr19:12734581 chr19:12734580 nonsynonymous SNV 0.973 3 20 hm5C_associated_SNPs_19501 0 0 1 0 2 Cytosol 1 0.500231643926811 0.539941549301148 0.999536712146379 hm5C_site_20736 DeepMRMD:0.539941549301148;iRNA_m5C:0.999536712146379 20737 chr5 150028001 150028001 1 + C A COAD 150027987 + 150027967 150028007 41 CTGTCCCAAAACCGAGAGGCCCAGCAGTCCTCACCGGCCCC CTGTCCCAAAACCGAGAGGCCCAGCAGTCCTCACAGGCCCC < 41bp 1 0.103566346466869 1 0.127914607524872 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYNPO ENSG00000171992 CDS Human protein_coding chr5:150027987 chr5:150028001 nonsynonymous SNV 0.002 2 35 hm5C_associated_SNPs_19502 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643755484 1 0.999536712489033 hm5C_site_20737 DeepMRMD:1;iRNA_m5C:0.999536712489033 20738 chr11 985532 985532 1 + G A COAD 985545 + 985525 985565 41 CCAACGCGAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA CCAACGCAAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA < 41bp 1 0.0480101828036929 1 0.0590404570102692 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985545 chr11:985532 synonymous SNV . 0 8 hm5C_associated_SNPs_19503 0 0 1 0 2 Nucleus 1 0.500231643950407 1 0.999536712099186 hm5C_site_20738 DeepMRMD:1;iRNA_m5C:0.999536712099186 20739 chr5 172386920 172386920 1 + G A COAD 172386906 + 172386886 172386926 41 AATCCCTTCGTTACCTCGGACCGCAGTAAAAACCGCAAACG AATCCCTTCGTTACCTCGGACCGCAGTAAAAACCACAAACG < 41bp 1 0.630349822278422 1 0.272429913282394 experiment 0.739300355443155 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172386906 chr5:172386920 nonsynonymous SNV 0.708 1 35 hm5C_associated_SNPs_19504 0 0 1 0 1 Ribosome 1 0.500231532681572 1 0.999536934636857 hm5C_site_20739 DeepMRMD:1;iRNA_m5C:0.999536934636857 20740 chr12 53516946 53516946 1 + T C COAD 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCCTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT < 41bp 1 0.144119677878003 1 0.0625842809677124 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516946 nonsynonymous SNV 0.994 1 7 hm5C_associated_SNPs_19505 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20740 DeepMRMD:1;iRNA_m5C:0.999536712157815 20741 chr20 61450603 61450603 1 + G A COAD 61450587 + 61450567 61450607 41 TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAC TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGAAAAC < 41bp 1 0.32623567035839 1 0.092151939868927 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450587 chr20:61450603 synonymous SNV . 0 37 hm5C_associated_SNPs_19506 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20741 DeepMRMD:1;iRNA_m5C:0.999536712157815 20742 chr20 61450603 61450603 1 + G A COAD 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGAAAACC < 41bp 1 0.175503594585563 1 0.237881541252136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450603 synonymous SNV . 0 36 hm5C_associated_SNPs_19507 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20742 DeepMRMD:1;iRNA_m5C:0.999536712157815 20743 chr17 48156857 48156857 1 + G C COAD 48156868 + 48156848 48156888 41 ATCCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCT ATCCAGGGGCAGGCCAGGGCCCCCCACCTGTCACTCTGGCT < 41bp 1 0.0590874771437347 1 0.239337712526321 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156868 chr17:48156857 nonsynonymous SNV 0.999 0 10 hm5C_associated_SNPs_19508 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20743 DeepMRMD:1;iRNA_m5C:0.999536712157815 20744 chr17 48156857 48156857 1 + G C COAD 48156870 + 48156850 48156890 41 CCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC CCAGGGGCAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC < 41bp 1 0.0980145218235696 1 0.116953521966934 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156870 chr17:48156857 nonsynonymous SNV 0.999 0 8 hm5C_associated_SNPs_19509 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20744 DeepMRMD:1;iRNA_m5C:0.999536712157815 20745 chr12 27788002 27788002 1 + C A COAD 27788020 + 27788000 27788040 41 CCCAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCAGA CCAAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCAGA < 41bp 1 0.315873273532157 1 0.200463116168976 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27788020 chr12:27788002 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_19510 0 0 1 0 1 Nucleus 1 0.500231643545436 1 0.999536712909129 hm5C_site_20745 DeepMRMD:1;iRNA_m5C:0.999536712909129 20746 chr3 142840876 142840876 1 + G A COAD 142840885 + 142840865 142840905 41 GCTAAGACGCTGCAGACAGCCCTGCAGCCCCCTGACTGGCT GCTAAGACGCTACAGACAGCCCTGCAGCCCCCTGACTGGCT < 41bp 1 0.0906311806477498 1 0.0902504026889801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840885 chr3:142840876 synonymous SNV . 0 12 hm5C_associated_SNPs_19511 0 0 0 0 0 cytosol 1 0.50023164393465 1 0.9995367121307 hm5C_site_20746 DeepMRMD:1;iRNA_m5C:0.9995367121307 20747 chr3 142840876 142840876 1 + G A COAD 142840893 + 142840873 142840913 41 GCTGCAGACAGCCCTGCAGCCCCCTGACTGGCTGCAGGGCC GCTACAGACAGCCCTGCAGCCCCCTGACTGGCTGCAGGGCC < 41bp 1 0.280460230765609 1 0.119096428155899 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840893 chr3:142840876 synonymous SNV . 0 4 hm5C_associated_SNPs_19512 0 0 0 0 0 cytosol 1 0.500231643920325 1 0.999536712159351 hm5C_site_20747 DeepMRMD:1;iRNA_m5C:0.999536712159351 20748 chr7 128407566 128407566 1 + C T COAD 128407572 + 128407552 128407592 41 GGGTAAAGACAGAGCGAGAGCAGTTTGTTGAGTTTCGGGAT GGGTAAAGACAGAGTGAGAGCAGTTTGTTGAGTTTCGGGAT < 41bp 1 0.471077694695644 1 0.186092525720596 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407572 chr7:128407566 stopgain 0.998 1 15 hm5C_associated_SNPs_19513 0 0 1 0 1 Ribosome 1 0.500231643950595 1 0.99953671209881 hm5C_site_20748 DeepMRMD:1;iRNA_m5C:0.99953671209881 20749 chr11 95561127 95561127 1 + G A COAD 95561126 + 95561106 95561146 41 GTAACACCTCCCTCCTCCAACGGTATTAATGAGGAGTTGTC GTAACACCTCCCTCCTCCAACAGTATTAATGAGGAGTTGTC < 41bp 1 0.594105513999683 1 0.142979264259338 experiment 0.811788972000633 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95561126 chr11:95561127 nonsynonymous SNV 0.049 0 22 hm5C_associated_SNPs_19514 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20749 DeepMRMD:1;iRNA_m5C:0.999536712157815 20750 chr18 21098870 21098870 1 + G A COAD 21098888 + 21098868 21098908 41 ATGTTCTCTTCTTGAGGCATCATTCTCGGACCTCCAACAGC ATATTCTCTTCTTGAGGCATCATTCTCGGACCTCCAACAGC < 41bp 1 0.0625996601961816 1 0.0533639192581177 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21098888 chr18:21098870 nonsynonymous SNV 0.828 0 3 hm5C_associated_SNPs_19515 0 0 1 0 2 Ribosome 1 0.500231643919977 1 0.999536712160047 hm5C_site_20750 DeepMRMD:1;iRNA_m5C:0.999536712160047 20751 chr19 2343237 2343237 1 + G A COAD 2343242 + 2343222 2343262 41 CTCCAGGATGCCCTGGGCATCGCCTTCTGCCTCTACATGCT CTCCAGGATGCCCTGAGCATCGCCTTCTGCCTCTACATGCT < 41bp 1 0.350049273928795 1 0.0768775045871735 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2343242 chr19:2343237 . 0.988 3 16 hm5C_associated_SNPs_19516 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643885024 1 0.999536712229952 hm5C_site_20751 DeepMRMD:1;iRNA_m5C:0.999536712229952 20752 chr12 110456190 110456190 1 + C T COAD 110456173 + 110456153 110456193 41 CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATC CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGTATC < 41bp 1 0.380719438618989 1 0.605301380157471 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456173 chr12:110456190 synonymous SNV . 0 38 hm5C_associated_SNPs_19518 0 0 1 1 1 chromatin 1 0.500231638481818 0.789397239685058 0.999536723036364 hm5C_site_20752 DeepMRMD:0.789397239685058;iRNA_m5C:0.999536723036364 20753 chr12 110456190 110456190 1 + C T COAD 110456174 + 110456154 110456194 41 CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATCT CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGTATCT < 41bp 1 0.311366857362149 1 0.151655048131943 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456174 chr12:110456190 synonymous SNV . 0 37 hm5C_associated_SNPs_19519 0 0 1 1 1 chromatin 1 0.500231643893329 1 0.999536712213343 hm5C_site_20753 DeepMRMD:1;iRNA_m5C:0.999536712213343 20754 chr2 224824384 224824384 1 + C T COAD 224824387 + 224824367 224824407 41 AAAGTGAGGAGGCCAAACGCCAACAACTTGGGATAGAGAAA AAAGTGAGGAGGCCAAATGCCAACAACTTGGGATAGAGAAA < 41bp 1 0.670905694054055 1 0.368696302175522 experiment 0.65818861189189 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824387 chr2:224824384 nonsynonymous SNV 0.482 4 18 hm5C_associated_SNPs_19520 1 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20754 DeepMRMD:1;iRNA_m5C:0.999536712157815 not provided not provided 20755 chr5 122154692 122154692 1 + T C COAD 122154694 + 122154674 122154714 41 TCAGAACTACTTAGTGACTACATTCGTCTTATTGCTGCAGT TCAGAACTACTTAGTGACCACATTCGTCTTATTGCTGCAGT < 41bp 1 0.0519121622772961 1 0.106340914964676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122154694 chr5:122154692 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_19521 0 0 1 0 1 Ribosome 1 0.500231711839895 1 0.99953657632021 hm5C_site_20755 DeepMRMD:1;iRNA_m5C:0.99953657632021 20756 chr2 228162516 228162516 1 + G A COAD 228162527 + 228162507 228162547 41 GTCTGCCCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT GTCTGCCCGATGCAATTATCCCTGGCCAGACAGGAAATCGT < 41bp 1 0.13152570388228 1 0.107028275728226 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228162527 chr2:228162516 nonsynonymous SNV 0.385 5 10 hm5C_associated_SNPs_19522 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20756 DeepMRMD:1;iRNA_m5C:0.999536712157815 20757 chr1 28600553 28600553 1 + G A COAD 28600565 + 28600545 28600585 41 CCTCAGCTGACATCCTGGAGCCCTCTCCACACCCAGACATG CCTCAGCTAACATCCTGGAGCCCTCTCCACACCCAGACATG < 41bp 1 0.018457690670957 1 0.0191808342933655 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600565 chr1:28600553 nonsynonymous SNV 0.252 3 9 hm5C_associated_SNPs_19523 0 0 1 0 1 Ribosome 1 0.50023164318157 1 0.999536713636859 hm5C_site_20757 DeepMRMD:1;iRNA_m5C:0.999536713636859 20758 chr17 16329474 16329474 1 + C A COAD 16329457 + 16329437 16329477 41 GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCGA GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCAACGA < 41bp 1 0.00835955864033064 1 0.0494561791419983 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329457 chr17:16329474 nonsynonymous SNV 0.934 5 38 hm5C_associated_SNPs_19524 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920503 1 0.999536712158994 hm5C_site_20758 DeepMRMD:1;iRNA_m5C:0.999536712158994 20759 chr3 184021823 184021823 1 + T C COAD 184021833 + 184021813 184021853 41 GACTATGTTCTCCACAACAGCAACACCATGAGACTTGGTTC GACTATGTTCCCCACAACAGCAACACCATGAGACTTGGTTC < 41bp 1 0.565992419263414 1 0.329997926950455 experiment 0.868015161473171 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021833 chr3:184021823 nonsynonymous SNV 0.999 2 11 hm5C_associated_SNPs_19525 0 0 1 0 2 Ribosome 1 0.500231644424292 1 0.999536711151416 hm5C_site_20759 DeepMRMD:1;iRNA_m5C:0.999536711151416 20760 chr11 74336521 74336521 1 + G A COAD 74336519 + 74336499 74336539 41 AAAAATAGTGGAGCAGCCTACAGTGTCTGTCACGGAACCAA AAAAATAGTGGAGCAGCCTACAATGTCTGTCACGGAACCAA < 41bp 1 0.336743400553412 1 0.371417939662933 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD3 ENSG00000077514 CDS Human protein_coding chr11:74336519 chr11:74336521 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_19526 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20760 DeepMRMD:1;iRNA_m5C:0.999536712157815 20761 chr11 68204433 68204433 1 + C T COAD 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCTGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG < 41bp 1 0.139293652133777 1 0.0968851745128632 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204433 synonymous SNV . 0 4 hm5C_associated_SNPs_19527 0 0 0 0 2 Endoplasmic reticulum 1 0.500234589345283 1 0.999530821309435 hm5C_site_20761 DeepMRMD:1;iRNA_m5C:0.999530821309435 20762 chr11 68204433 68204433 1 + C T COAD 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCTGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA < 41bp 1 0.45155790203668 1 0.582846164703369 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204433 synonymous SNV . 0 3 hm5C_associated_SNPs_19528 0 0 0 0 2 Endoplasmic reticulum 1 0.500232448257297 0.834307670593262 0.999535103485406 hm5C_site_20762 DeepMRMD:0.834307670593262;iRNA_m5C:0.999535103485406 20763 chr17 7417427 7417427 1 + G A COAD 7417430 + 7417410 7417450 41 ACTTCCCCTGGTTACTCGCCCACCAGCCCCACCTACAGTCT ACTTCCCCTGGTTACTCACCCACCAGCCCCACCTACAGTCT < 41bp 1 0.677865436425442 1 0.44840407371521 experiment 0.644269127149117 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7417430 chr17:7417427 synonymous SNV 0.990 0 18 hm5C_associated_SNPs_19530 0 0 1 0 0 Nucleus 1 0.500231643920824 1 0.999536712158351 hm5C_site_20763 DeepMRMD:1;iRNA_m5C:0.999536712158351 20764 chr19 7620147 7620147 1 + G A COAD 7620146 + 7620126 7620166 41 CCATCCCAGCATGAGCTCTACGAGAAGGTTTTCTCCAGGCG CCATCCCAGCATGAGCTCTACAAGAAGGTTTTCTCCAGGCG < 41bp 1 0.620878534250833 1 0.186141908168793 experiment 0.758242931498334 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620146 chr19:7620147 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_19532 0 0 1 0 1 Ribosome 1 0.500231643987185 1 0.99953671202563 hm5C_site_20764 DeepMRMD:1;iRNA_m5C:0.99953671202563 20765 chr19 7620147 7620147 1 + G A COAD 7620161 + 7620141 7620181 41 CTCTACGAGAAGGTTTTCTCCAGGCGCGCGGACCGGCACAG CTCTACAAGAAGGTTTTCTCCAGGCGCGCGGACCGGCACAG < 41bp 1 0.666009424772872 1 0.919839859008789 experiment 0.667981150454255 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620161 chr19:7620147 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_19533 0 0 1 0 1 Ribosome 1 0.500231503406192 0.160320281982422 0.999536993187615 hm5C_site_20765 DeepMRMD:0.160320281982422;iRNA_m5C:0.999536993187615 20766 chr13 111111152 111111152 1 + C T COAD 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ATGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG < 41bp 1 0.28228760280017 1 0.74571692943573 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111152 synonymous SNV . 0 2 hm5C_associated_SNPs_19535 0 0 0 0 1 Cytosol 1 0.500231643921092 0.50856614112854 0.999536712157815 hm5C_site_20766 DeepMRMD:0.50856614112854;iRNA_m5C:0.999536712157815 20767 chr16 31235536 31235536 1 + G A COAD 31235556 + 31235536 31235576 41 GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG ACACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG < 41bp 1 0.267835510398057 1 0.0841374695301056 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235556 chr16:31235536 synonymous SNV . 0 1 hm5C_associated_SNPs_19537 0 0 1 0 1 exosome 1 0.500231642883762 1 0.999536714232475 hm5C_site_20767 DeepMRMD:1;iRNA_m5C:0.999536714232475 20768 chr8 25149615 25149615 1 + T C COAD 25149611 + 25149591 25149631 41 ATCGAGTGGCGGTCCCAGATCCTGTCTGGGACGCTCCCCAA ATCGAGTGGCGGTCCCAGATCCTGCCTGGGACGCTCCCCAA < 41bp 1 0.295095754733313 1 0.747626721858978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25149611 chr8:25149615 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_19538 0 0 1 0 2 Nucleus 1 0.500231643921092 0.504746556282044 0.999536712157815 hm5C_site_20768 DeepMRMD:0.504746556282044;iRNA_m5C:0.999536712157815 20769 chrX 149671754 149671754 1 + C T COAD 149671740 + 149671720 149671760 41 GGGCAGCTGGGATCCGAAGGCCTGGAGGCAGGTGCCCGCTC GGGCAGCTGGGATCCGAAGGCCTGGAGGCAGGTGTCCGCTC < 41bp 1 0.482011997834043 1 0.517258524894714 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149671740 chrX:149671754 nonsynonymous SNV 0.997 3 35 hm5C_associated_SNPs_19539 0 0 0 0 1 Nucleus 1 0.500231643921092 0.965482950210572 0.999536712157815 hm5C_site_20769 DeepMRMD:0.965482950210572;iRNA_m5C:0.999536712157815 20770 chr19 54649749 54649749 1 + C G COAD 54649752 + 54649732 54649772 41 ACCACCTCCAGCTCTCCCATCCCGCCCAGCCCAGCCAACTG ACCACCTCCAGCTCTCCGATCCCGCCCAGCCCAGCCAACTG < 41bp 1 0.224372476698649 1 0.487461417913437 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54649752 chr19:54649749 synonymous SNV . 0 18 hm5C_associated_SNPs_19541 0 0 1 0 1 Ribosome 1 0.500231791637509 1 0.999536416724983 hm5C_site_20770 DeepMRMD:1;iRNA_m5C:0.999536416724983 20771 chrX 48925560 48925560 1 + A G COAD 48925566 + 48925546 48925586 41 GGGCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCC GGGCCAGGCGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCC < 41bp 1 0.0974417849196309 1 0.0710498690605164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925566 chrX:48925560 nonsynonymous SNV 0.987 3 15 hm5C_associated_SNPs_19542 0 0 0 0 1 cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_20771 DeepMRMD:1;iRNA_m5C:0.999536712157814 20772 chrX 48925560 48925560 1 + A G COAD 48925567 + 48925547 48925587 41 GGCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCC GGCCAGGCGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCCC < 41bp 1 0.498141386818053 1 0.298236399888992 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925567 chrX:48925560 nonsynonymous SNV 0.987 3 14 hm5C_associated_SNPs_19543 0 0 0 0 1 cytosol 1 0.50023164528425 1 0.999536709431501 hm5C_site_20772 DeepMRMD:1;iRNA_m5C:0.999536709431501 20773 chrX 48925560 48925560 1 + A G COAD 48925568 + 48925548 48925588 41 GCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCA GCCAGGCGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCCCA < 41bp 1 0.245548145698184 1 0.139086902141571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925568 chrX:48925560 nonsynonymous SNV 0.987 3 13 hm5C_associated_SNPs_19544 0 0 0 0 1 cytosol 1 0.500231643921946 1 0.999536712156108 hm5C_site_20773 DeepMRMD:1;iRNA_m5C:0.999536712156108 20774 chrX 48925560 48925560 1 + A G COAD 48925569 + 48925549 48925589 41 CCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCAC CCAGGCGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCCCAC < 41bp 1 0.207599386219111 1 0.442592054605484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925569 chrX:48925560 nonsynonymous SNV 0.987 3 12 hm5C_associated_SNPs_19545 0 0 0 0 1 cytosol 1 0.500231638601366 1 0.999536722797269 hm5C_site_20774 DeepMRMD:1;iRNA_m5C:0.999536722797269 20775 chrX 48925560 48925560 1 + A G COAD 48925570 + 48925550 48925590 41 CAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACA CAGGCGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCCCACA < 41bp 1 0.373529955156794 1 0.492123246192932 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925570 chrX:48925560 nonsynonymous SNV 0.987 3 11 hm5C_associated_SNPs_19546 0 0 0 0 1 cytosol 1 0.500231709123377 1 0.999536581753246 hm5C_site_20775 DeepMRMD:1;iRNA_m5C:0.999536581753246 20776 chrX 48925560 48925560 1 + A G COAD 48925573 + 48925553 48925593 41 GCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTC GCGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCCCACACTC < 41bp 1 0.564391975308089 1 0.885848879814148 experiment 0.871216049383823 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925573 chrX:48925560 nonsynonymous SNV 0.987 3 8 hm5C_associated_SNPs_19547 0 0 0 0 1 cytosol 1 0.500231645502878 0.228302240371704 0.999536708994243 hm5C_site_20776 DeepMRMD:0.228302240371704;iRNA_m5C:0.999536708994243 20777 chrX 48925560 48925560 1 + A G COAD 48925574 + 48925554 48925594 41 CGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTCG CGCTGTGCGGGGCCCCCAGCCAGGCGCCACTCCCACACTCG < 41bp 1 0.604437592057262 1 0.942014992237091 experiment 0.791124815885475 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925574 chrX:48925560 nonsynonymous SNV 0.987 3 7 hm5C_associated_SNPs_19548 0 0 0 0 1 cytosol 1 0.500231643941655 0.115970015525818 0.999536712116691 hm5C_site_20777 DeepMRMD:0.115970015525818;iRNA_m5C:0.999536712116691 20778 chr1 228496002 228496002 1 + G C COAD 228496008 + 228495988 228496028 41 CACACCCTGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGG CACACCCTGCGGCTCAAGGGCGTGACGCCCGAGGACGCTGG < 41bp 1 0.104313134801688 1 0.658092141151428 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496008 chr1:228496002 synonymous SNV . 0 15 hm5C_associated_SNPs_19549 0 0 0 0 1 Ribosome 1 0.500231655820855 0.683815717697144 0.999536688358289 hm5C_site_20778 DeepMRMD:0.683815717697144;iRNA_m5C:0.999536688358289 20779 chr1 228496002 228496002 1 + G C COAD 228496015 + 228495995 228496035 41 TGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC TGCGGCTCAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC < 41bp 1 0.144964252000724 1 0.700299263000488 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496015 chr1:228496002 synonymous SNV . 0 8 hm5C_associated_SNPs_19550 0 0 0 0 1 Ribosome 1 0.500231643450855 0.599401473999024 0.999536713098289 hm5C_site_20779 DeepMRMD:0.599401473999024;iRNA_m5C:0.999536713098289 20780 chr1 228496002 228496002 1 + G C COAD 228496016 + 228495996 228496036 41 GCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT GCGGCTCAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT < 41bp 1 0.0712023625881616 1 0.510619282722473 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496016 chr1:228496002 synonymous SNV . 0 7 hm5C_associated_SNPs_19551 0 0 0 0 1 Ribosome 1 0.500231667771406 0.978761434555054 0.999536664457188 hm5C_site_20780 DeepMRMD:0.978761434555054;iRNA_m5C:0.999536664457188 20781 chr1 228496002 228496002 1 + G C COAD 228496017 + 228495997 228496037 41 CGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC CGGCTCAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC < 41bp 1 0.210566759472297 1 0.880940854549408 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496017 chr1:228496002 synonymous SNV . 0 6 hm5C_associated_SNPs_19552 0 0 0 0 1 Ribosome 1 0.500231643922375 0.238118290901184 0.999536712155251 hm5C_site_20781 DeepMRMD:0.238118290901184;iRNA_m5C:0.999536712155251 20782 chrX 73047072 73047072 1 + C T COAD 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTGATAGGTGCAGAACGTCAGCTATCAGAGCAAGCA < 41bp 1 0.377831448917424 1 0.135126084089279 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047072 . . 0 25 hm5C_associated_SNPs_19553 0 0 1 2 0 unknown 1 0.500231647941037 1 0.999536704117926 hm5C_site_20782 DeepMRMD:1;iRNA_m5C:0.999536704117926 20783 chr10 60580160 60580160 1 + A C COAD 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCGATCTTCAGACATTCCTCACTCTCACAGCTCAGGATCT < 41bp 1 0.0907959278675374 1 0.108972370624542 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580160 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_19554 0 0 1 0 2 nucleus 1 0.500231688302894 1 0.999536623394212 hm5C_site_20783 DeepMRMD:1;iRNA_m5C:0.999536623394212 20784 chr7 130021519 130021519 1 + C T COAD 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGT < 41bp 1 0.179335705130744 1 0.0719693005084991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021519 stopgain 0.899 1 37 hm5C_associated_SNPs_19555 0 0 0 0 2 Endoplasmic reticulum 1 0.500228570346325 1 0.999542859307351 hm5C_site_20784 DeepMRMD:1;iRNA_m5C:0.999542859307351 20785 chr7 130021519 130021519 1 + C T COAD 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGC < 41bp 1 0.208881785218373 1 0.0313260555267334 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021519 stopgain 0.899 1 35 hm5C_associated_SNPs_19556 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921103 1 0.999536712157793 hm5C_site_20785 DeepMRMD:1;iRNA_m5C:0.999536712157793 20786 chr7 130021519 130021519 1 + C T COAD 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGCC < 41bp 1 0.434526720548304 1 0.518277883529663 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021519 stopgain 0.899 1 34 hm5C_associated_SNPs_19557 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.963444232940674 0.999536712157815 hm5C_site_20786 DeepMRMD:0.963444232940674;iRNA_m5C:0.999536712157815 20787 chr7 130021519 130021519 1 + C T COAD 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGCCC < 41bp 1 0.0994683185014242 1 0.0669406652450562 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021519 stopgain 0.899 1 33 hm5C_associated_SNPs_19558 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920908 1 0.999536712158184 hm5C_site_20787 DeepMRMD:1;iRNA_m5C:0.999536712158184 20788 chr7 130021519 130021519 1 + C T COAD 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGCCCT < 41bp 1 0.0605153482890077 1 0.220983594655991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021519 stopgain 0.899 1 32 hm5C_associated_SNPs_19559 0 0 0 0 2 Endoplasmic reticulum 1 0.500231580045654 1 0.999536839908693 hm5C_site_20788 DeepMRMD:1;iRNA_m5C:0.999536839908693 20789 chr7 130021519 130021519 1 + C T COAD 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTCCCCCATCGACGTCTGAGTGCCCTT < 41bp 1 0.346104808286123 1 0.195549219846725 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021519 stopgain 0.899 1 31 hm5C_associated_SNPs_19560 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_20789 DeepMRMD:1;iRNA_m5C:0.999536712157816 20790 chr7 130021519 130021519 1 + C T COAD 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTCCCCCATCGACGTCTGAGTGCCCTTCCCCAG < 41bp 1 0.515746014667457 1 0.26461923122406 experiment 0.968507970665085 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021519 stopgain 0.899 1 25 hm5C_associated_SNPs_19561 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_20790 DeepMRMD:1;iRNA_m5C:0.999536712157815 20791 chr7 130021519 130021519 1 + C T COAD 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG CCCCCATCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0688254995967481 1 0.0230735838413239 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021519 stopgain 0.899 1 15 hm5C_associated_SNPs_19563 0 0 0 0 2 Endoplasmic reticulum 1 0.500230989904909 1 0.999538020190182 hm5C_site_20791 DeepMRMD:1;iRNA_m5C:0.999538020190182 20792 chr7 130021519 130021519 1 + C T COAD 130021526 + 130021506 130021546 41 CCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGG CCCCATCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGG < 41bp 1 0.025581734959122 1 0.0635367929935455 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021526 chr7:130021519 stopgain 0.899 1 14 hm5C_associated_SNPs_19564 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20792 DeepMRMD:1;iRNA_m5C:0.999536712157815 20793 chr7 130021519 130021519 1 + C T COAD 130021527 + 130021507 130021547 41 CCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGT CCCATCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGGT < 41bp 1 0.164771749152678 1 0.0603552758693695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021527 chr7:130021519 stopgain 0.899 1 13 hm5C_associated_SNPs_19565 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643701395 1 0.99953671259721 hm5C_site_20793 DeepMRMD:1;iRNA_m5C:0.99953671259721 20794 chr7 130021519 130021519 1 + C T COAD 130021530 + 130021510 130021550 41 ATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA ATCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA < 41bp 1 0.684184668066656 1 0.560113131999969 experiment 0.631630663866688 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021530 chr7:130021519 stopgain 0.899 1 10 hm5C_associated_SNPs_19566 0 0 0 0 2 Endoplasmic reticulum 1 0.500242568127895 0.879773736000062 0.99951486374421 hm5C_site_20794 DeepMRMD:0.879773736000062;iRNA_m5C:0.99951486374421 20795 chr7 130021519 130021519 1 + C T COAD 130021531 + 130021511 130021551 41 TCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG TCGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG < 41bp 1 0.350354546280163 1 0.387180030345917 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021531 chr7:130021519 stopgain 0.899 1 9 hm5C_associated_SNPs_19567 0 0 0 0 2 Endoplasmic reticulum 1 0.500231638070424 1 0.999536723859151 hm5C_site_20795 DeepMRMD:1;iRNA_m5C:0.999536723859151 20796 chr7 130021519 130021519 1 + C T COAD 130021532 + 130021512 130021552 41 CGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA CGACGTCTGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA < 41bp 1 0.362342322794676 1 0.164808005094528 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021532 chr7:130021519 stopgain 0.899 1 8 hm5C_associated_SNPs_19568 0 0 0 0 2 Endoplasmic reticulum 1 0.500233370378522 1 0.999533259242956 hm5C_site_20796 DeepMRMD:1;iRNA_m5C:0.999533259242956 20797 chr7 130021519 130021519 1 + C T COAD 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTCTGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT < 41bp 1 0.157838012642367 1 0.0695635080337524 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021519 stopgain 0.899 1 4 hm5C_associated_SNPs_19569 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20797 DeepMRMD:1;iRNA_m5C:0.999536712157815 20798 chr7 130021519 130021519 1 + C T COAD 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT TGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT < 41bp 1 0.398012159172782 1 0.324582874774933 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021519 stopgain 0.899 1 1 hm5C_associated_SNPs_19570 0 0 0 0 2 Endoplasmic reticulum 1 0.500232080729331 1 0.999535838541339 hm5C_site_20798 DeepMRMD:1;iRNA_m5C:0.999535838541339 20799 chr7 98497050 98497050 1 + C T COAD 98497067 + 98497047 98497087 41 TTCCATCATTCCGAGGGGATCACTTTCTCTGAAAGTGTTGG TTCTATCATTCCGAGGGGATCACTTTCTCTGAAAGTGTTGG < 41bp 1 0.0322564768069464 1 0.0962260961532593 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98497067 chr7:98497050 synonymous SNV . 0 4 hm5C_associated_SNPs_19571 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20799 DeepMRMD:1;iRNA_m5C:0.999536712157815 20800 chr16 89977042 89977042 1 + C T COAD 89977054 + 89977034 89977074 41 TCTTCTTCCGGTCACTGTTGCCAAACTATACCATGGAGGTA TCTTCTTCTGGTCACTGTTGCCAAACTATACCATGGAGGTA < 41bp 1 0.289787691662862 1 0.296983063220978 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89977054 chr16:89977042 nonsynonymous SNV 0.037 4 9 hm5C_associated_SNPs_19574 0 0 1 0 2 Cytosol 1 0.500231691797714 1 0.999536616404571 hm5C_site_20800 DeepMRMD:1;iRNA_m5C:0.999536616404571 20801 chr1 876651 876651 1 + C T COAD 876631 + 876611 876651 41 GTCAGCGTCGGAAGCAGGGCCTGGCTCAGCACCGGGAGGGC GTCAGCGTCGGAAGCAGGGCCTGGCTCAGCACCGGGAGGGT < 41bp 1 0.672078389769791 1 0.383477687835693 experiment 0.655843220460419 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:876631 chr1:876651 synonymous SNV 0.016 0 41 hm5C_associated_SNPs_19575 0 0 1 0 1 nucleus 1 0.500231413029808 1 0.999537173940384 hm5C_site_20801 DeepMRMD:1;iRNA_m5C:0.999537173940384 20802 chr7 5643530 5643530 1 + G A COAD 5643510 + 5643490 5643530 41 ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACCG ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACCA < 41bp 1 0.340432332440768 1 0.0629790127277374 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643510 chr7:5643530 nonsynonymous SNV 0.963 2 41 hm5C_associated_SNPs_19577 0 0 1 0 1 Ribosome 1 0.500211284457155 1 0.99957743108569 hm5C_site_20802 DeepMRMD:1;iRNA_m5C:0.99957743108569 20803 chr19 50334614 50334614 1 + G A COAD 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGATGAGCGGCCCTTCCCCAGCCCAGCTGGGAG < 41bp 1 0.215421508687646 1 0.199333250522614 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334614 nonsynonymous SNV 0.827 2 11 hm5C_associated_SNPs_19578 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_20803 DeepMRMD:1;iRNA_m5C:0.999536712157815 20804 chr19 50334614 50334614 1 + G A COAD 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGATGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA < 41bp 1 0.465728620492691 1 0.243229418992996 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334614 nonsynonymous SNV 0.827 2 6 hm5C_associated_SNPs_19579 0 0 1 0 1 chromatin 1 0.500231643920294 1 0.999536712159412 hm5C_site_20804 DeepMRMD:1;iRNA_m5C:0.999536712159412 20805 chr17 37676239 37676239 1 + C A COAD 37676240 + 37676220 37676260 41 CAGCACTTGATTTATTGGACCACATGCTGACACTAGATCCT CAGCACTTGATTTATTGGAACACATGCTGACACTAGATCCT < 41bp 1 0.132179445116993 1 0.0449666380882263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676240 chr17:37676239 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_19580 0 0 1 0 1 Nucleus 1 0.500231643921117 1 0.999536712157767 hm5C_site_20805 DeepMRMD:1;iRNA_m5C:0.999536712157767 20806 chr13 20233194 20233194 1 + G A COAD 20233203 + 20233183 20233223 41 GGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAA GGATGAAGTTGAAAGATTTCCAAAAGCACCTTGATGGGAAA < 41bp 1 0.692814751475586 1 0.802286326885223 experiment 0.614370497048828 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20233203 chr13:20233194 nonsynonymous SNV 0.760 4 12 hm5C_associated_SNPs_19581 0 0 1 0 2 Ribosome 1 0.500231645473295 0.395427346229554 0.999536709053411 hm5C_site_20806 DeepMRMD:0.395427346229554;iRNA_m5C:0.999536709053411 20807 chr19 50912138 50912138 1 + C T COAD 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACGCTCCTTCGGCCTGGGACTG < 41bp 1 0.180685071619708 1 0.0387570858001709 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912138 synonymous SNV . 0 34 hm5C_associated_SNPs_19582 2 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20807 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 20808 chr1 179851769 179851769 1 + G A COAD 179851757 + 179851737 179851777 41 CCTCAAAATGGCGGCAGCAGCGATGCGCCTGCGTACAGAAC CCTCAAAATGGCGGCAGCAGCGATGCGCCTGCATACAGAAC < 41bp 1 0.65032283294265 1 0.26691722869873 experiment 0.6993543341147 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TOR1AIP1 ENSG00000143337 CDS Human protein_coding chr1:179851757 chr1:179851769 synonymous SNV . 0 33 hm5C_associated_SNPs_19584 0 0 1 0 0 Endoplasmic reticulum 1 0.500210165563351 1 0.999579668873298 hm5C_site_20808 DeepMRMD:1;iRNA_m5C:0.999579668873298 20809 chr11 67787207 67787207 1 + C T COAD 67787211 + 67787191 67787231 41 TTGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTG TTGCTGTGGTGCTGGGTGGGCCCCAGGAGACGGGGCAGCTG < 41bp 1 0.47385486400538 1 0.365920394659042 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787211 chr11:67787207 synonymous SNV . 0 17 hm5C_associated_SNPs_19585 0 0 0 0 2 Ribosome 1 0.500231644756038 1 0.999536710487925 hm5C_site_20809 DeepMRMD:1;iRNA_m5C:0.999536710487925 20810 chr11 67787207 67787207 1 + C T COAD 67787212 + 67787192 67787232 41 TGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTGC TGCTGTGGTGCTGGGTGGGCCCCAGGAGACGGGGCAGCTGC < 41bp 1 0.249467321905068 1 0.549837112426758 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787212 chr11:67787207 synonymous SNV . 0 16 hm5C_associated_SNPs_19586 0 0 0 0 2 Ribosome 1 0.500231643909895 0.900325775146484 0.99953671218021 hm5C_site_20810 DeepMRMD:0.900325775146484;iRNA_m5C:0.99953671218021 20811 chrX 107868980 107868980 1 + G A COAD 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCCTGGACAGCCAGGTCTTATAGAACCTCCTGGACTT < 41bp 1 0.167107723918341 1 0.0420470237731934 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868980 nonsynonymous SNV 0.997 5 28 hm5C_associated_SNPs_19587 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20811 DeepMRMD:1;iRNA_m5C:0.999536712157815 20812 chr12 113872002 113872002 1 + C T COAD 113872014 + 113871994 113872034 41 AGAATGTCCCCCCGTTTGACCACCCCCTAATATGGTAAGGC AGAATGTCTCCCCGTTTGACCACCCCCTAATATGGTAAGGC < 41bp 1 0.162979698274707 1 0.159820824861526 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SDSL ENSG00000139410 CDS Human protein_coding chr12:113872014 chr12:113872002 nonsynonymous SNV 0.033 1 9 hm5C_associated_SNPs_19588 0 0 0 0 2 Nucleus 1 0.500231643921957 1 0.999536712156086 hm5C_site_20812 DeepMRMD:1;iRNA_m5C:0.999536712156086 20813 chr6 3015773 3015773 1 + T C COAD 3015789 + 3015769 3015809 41 GCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA GCTGCACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA < 41bp 1 0.425548224657342 1 0.0793637335300446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015789 chr6:3015773 nonsynonymous SNV 0.836 2 5 hm5C_associated_SNPs_19589 0 0 1 0 1 Ribosome 1 0.500231643846348 1 0.999536712307305 hm5C_site_20813 DeepMRMD:1;iRNA_m5C:0.999536712307305 20814 chr13 52604966 52604966 1 + G A COAD 52604967 + 52604947 52604987 41 TGAGAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAG TGAGAAGCGCAACATCCACACAGCAGCTCATCAGGTACAAG < 41bp 1 0.618266837249492 1 0.190110385417938 experiment 0.763466325501015 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604967 chr13:52604966 nonsynonymous SNV 0.401 0 20 hm5C_associated_SNPs_19590 0 0 1 0 0 nucleoplasm 1 0.500230589488404 1 0.999538821023193 hm5C_site_20814 DeepMRMD:1;iRNA_m5C:0.999538821023193 20815 chr13 52604966 52604966 1 + G A COAD 52604970 + 52604950 52604990 41 GAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAGTGC GAAGCGCAACATCCACACAGCAGCTCATCAGGTACAAGTGC < 41bp 1 0.179814070802428 1 0.0729733407497406 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604970 chr13:52604966 nonsynonymous SNV 0.401 0 17 hm5C_associated_SNPs_19591 0 0 1 0 0 nucleoplasm 1 0.50023088053428 1 0.99953823893144 hm5C_site_20815 DeepMRMD:1;iRNA_m5C:0.99953823893144 20816 chr1 116916048 116916048 1 + C T COAD 116916028 + 116916008 116916048 41 CGCGGCAGCCCTAGCTCCCTCCACTTGGCTCCCCTGGTCCC CGCGGCAGCCCTAGCTCCCTCCACTTGGCTCCCCTGGTCCT < 41bp 1 0.354126727225705 1 0.187892109155655 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP1A1 ENSG00000269279 CDS Human other chr1:116916028 chr1:116916048 nonsynonymous SNV . 0 41 hm5C_associated_SNPs_19592 0 0 1 0 1 Nucleus 1 0.500231637137796 1 0.999536725724409 hm5C_site_20816 DeepMRMD:1;iRNA_m5C:0.999536725724409 20817 chr9 139244095 139244095 1 + G A COAD 139244104 + 139244084 139244124 41 AGCAGGGACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTA AGCAGGGACTCACTACCCCTCCCCGTGAGGAGCAGGAAGTA < 41bp 1 0.291062317623684 1 0.197894126176834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139244104 chr9:139244095 synonymous SNV . 0 12 hm5C_associated_SNPs_19593 0 0 0 0 1 Cytosol 1 0.500231643572822 1 0.999536712854356 hm5C_site_20817 DeepMRMD:1;iRNA_m5C:0.999536712854356 20818 chr3 184039155 184039155 1 + G A COAD 184039162 + 184039142 184039182 41 CCCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCA CCCAGCCTTCGTCACCTTCTCCGACCCCATCACCATCCCCA < 41bp 1 0.217690658633294 1 0.359680593013763 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039162 chr3:184039155 synonymous SNV . 0 14 hm5C_associated_SNPs_19594 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_20818 DeepMRMD:1;iRNA_m5C:0.999536712157815 20819 chr3 184039155 184039155 1 + G A COAD 184039163 + 184039143 184039183 41 CCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCAG CCAGCCTTCGTCACCTTCTCCGACCCCATCACCATCCCCAG < 41bp 1 0.320911734506678 1 0.776067495346069 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039163 chr3:184039155 synonymous SNV . 0 13 hm5C_associated_SNPs_19595 0 0 1 0 1 Nucleus 1 0.500231643783645 0.447865009307862 0.999536712432709 hm5C_site_20819 DeepMRMD:0.447865009307862;iRNA_m5C:0.999536712432709 20820 chr7 73609162 73609162 1 + C T COAD 73609171 + 73609151 73609191 41 TTCAGAGATGGCCCTCCCCTCCGTGGATCCAACATGGATTT TTCAGAGATGGTCCTCCCCTCCGTGGATCCAACATGGATTT < 41bp 1 0.477763253846125 1 0.167983710765839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73609171 chr7:73609162 synonymous SNV . 0 12 hm5C_associated_SNPs_19596 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_20820 DeepMRMD:1;iRNA_m5C:0.999536712157815 20821 chr17 4905829 4905829 1 + G A COAD 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTCTCTGCAGGTCCGGGAGCACCCCATCCTGGG < 41bp 1 0.565010607815559 1 0.609167039394379 experiment 0.869978784368882 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905829 nonsynonymous SNV 0.997 3 17 hm5C_associated_SNPs_19597 0 0 1 0 1 Ribosome 1 0.500231643921092 0.781665921211242 0.999536712157815 hm5C_site_20821 DeepMRMD:0.781665921211242;iRNA_m5C:0.999536712157815 20822 chr22 40661386 40661386 1 + T C COAD 40661395 + 40661375 40661415 41 TTGAACTTAAGTTCACCAAACCCCATGGAGAATAAGGGAAT TTGAACTTAAGCTCACCAAACCCCATGGAGAATAAGGGAAT < 41bp 1 0.165477289458209 1 0.159560263156891 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40661395 chr22:40661386 synonymous SNV . 0 12 hm5C_associated_SNPs_19598 0 0 1 0 0 Cytosol 1 0.50023164391798 1 0.99953671216404 hm5C_site_20822 DeepMRMD:1;iRNA_m5C:0.99953671216404 20823 chr16 1550683 1550683 1 + C T COAD 1550684 + 1550664 1550704 41 CCGGATCCACCCCGAGGGGCCTCCCCTGAAATTCCAGGTGA CCGGATCCACCCCGAGGGGTCTCCCCTGAAATTCCAGGTGA < 41bp 1 0.39647881172278 1 0.114335954189301 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550684 chr16:1550683 nonsynonymous SNV 0.811 1 20 hm5C_associated_SNPs_19599 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20823 DeepMRMD:1;iRNA_m5C:0.999536712157815 20824 chr8 145583765 145583765 1 + G A COAD 145583775 + 145583755 145583795 41 TGCCCTTCTGGTCGCTTCAGCTGCTGCCTTCCAGGGTCTTC TGCCCTTCTGATCGCTTCAGCTGCTGCCTTCCAGGGTCTTC < 41bp 1 0.323659852494128 1 0.0655770599842072 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145583775 chr8:145583765 nonsynonymous SNV 0.023 0 11 hm5C_associated_SNPs_19600 0 0 1 0 0 Ribosome 1 0.500231645136684 1 0.999536709726633 hm5C_site_20824 DeepMRMD:1;iRNA_m5C:0.999536709726633 20825 chr17 79652704 79652704 1 + G A COAD 79652714 + 79652694 79652734 41 GACCTGATCCGCCAAGGGGACACACAGTGAGTTAGCGGGGC GACCTGATCCACCAAGGGGACACACAGTGAGTTAGCGGGGC < 41bp 1 0.193782508111973 1 0.239881336688995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79652714 chr17:79652704 nonsynonymous SNV 0.991 4 11 hm5C_associated_SNPs_19601 0 0 1 0 2 Nucleus 1 0.500231644821514 1 0.999536710356972 hm5C_site_20825 DeepMRMD:1;iRNA_m5C:0.999536710356972 20826 chr2 204082014 204082014 1 + G A COAD 204082013 + 204081993 204082033 41 TTCTCGAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA TTCTCGAAAATTTTGGGGATCAAGCAAGCGGCTCAGCCAGA < 41bp 1 0.187456975769036 1 0.258446902036667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204082013 chr2:204082014 synonymous SNV . 0 22 hm5C_associated_SNPs_19602 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_20826 DeepMRMD:1;iRNA_m5C:0.999536712157815 20827 chr10 104129689 104129689 1 + G A COAD 104129695 + 104129675 104129715 41 GTCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCA GTCTAGTGTTCGGGACCCATCCACTGAAAACCAAGAGGCCA < 41bp 1 0.205252475258337 1 0.718380928039551 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129695 chr10:104129689 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_19604 0 0 1 0 2 Nucleus 1 0.50023164392101 0.563238143920898 0.99953671215798 hm5C_site_20827 DeepMRMD:0.563238143920898;iRNA_m5C:0.99953671215798 20828 chr10 104129689 104129689 1 + G A COAD 104129696 + 104129676 104129716 41 TCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCAA TCTAGTGTTCGGGACCCATCCACTGAAAACCAAGAGGCCAA < 41bp 1 0.481895324469914 1 0.597578287124634 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129696 chr10:104129689 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_19605 0 0 1 0 2 Nucleus 1 0.500231643921187 0.804843425750732 0.999536712157626 hm5C_site_20828 DeepMRMD:0.804843425750732;iRNA_m5C:0.999536712157626 20829 chr1 978673 978673 1 + C T COAD 978683 + 978663 978703 41 GCGACGTGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATG GCGACGTGTGTTGTGAAGAACGGGCAGGCAGCGTGTGAATG < 41bp 1 0.375902035402266 1 0.150994628667831 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:978683 chr1:978673 nonsynonymous SNV 0.064 0 11 hm5C_associated_SNPs_19606 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644610793 1 0.999536710778415 hm5C_site_20829 DeepMRMD:1;iRNA_m5C:0.999536710778415 20830 chr21 46931095 46931095 1 + G A COAD 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCACACATCTTCTCCTTTGACGGCAAGGACGTCC < 41bp 1 0.0414166683253917 1 0.0856748521327972 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931095 nonsynonymous SNV 0.536 4 12 hm5C_associated_SNPs_19607 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20830 DeepMRMD:1;iRNA_m5C:0.999536712157815 20831 chr21 46931095 46931095 1 + G A COAD 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCACACATCTTCTCCTTTGACGGCAAGGACGTCCT < 41bp 1 0.0654541759238277 1 0.0712566673755646 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931095 nonsynonymous SNV 0.536 4 11 hm5C_associated_SNPs_19608 0 0 1 0 2 Nucleus 1 0.500234022744629 1 0.999531954510743 hm5C_site_20831 DeepMRMD:1;iRNA_m5C:0.999531954510743 20832 chr17 37359320 37359320 1 + T A COAD 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCAGCTCAGAAGATACCGTGAA < 41bp 1 0.384482990394726 1 0.235493212938309 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359320 nonsynonymous SNV 0.441 4 22 hm5C_associated_SNPs_19611 0 0 1 0 2 chromatin 1 0.500231643921089 1 0.999536712157821 hm5C_site_20832 DeepMRMD:1;iRNA_m5C:0.999536712157821 20833 chr17 37359320 37359320 1 + T A COAD 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCAGCTCAGAAGATACCGTGAATCT < 41bp 1 0.511754031034775 1 0.174792647361755 experiment 0.97649193793045 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359320 nonsynonymous SNV 0.441 4 19 hm5C_associated_SNPs_19612 0 0 1 0 2 chromatin 1 0.500231643921254 1 0.999536712157493 hm5C_site_20833 DeepMRMD:1;iRNA_m5C:0.999536712157493 20834 chr17 37359320 37359320 1 + T A COAD 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCAGCTCAGAAGATACCGTGAATCTAAGAAGATCGA < 41bp 1 0.217247126552062 1 0.228010207414627 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359320 nonsynonymous SNV 0.441 4 8 hm5C_associated_SNPs_19613 0 0 1 0 2 chromatin 1 0.500231644172833 1 0.999536711654335 hm5C_site_20834 DeepMRMD:1;iRNA_m5C:0.999536711654335 20835 chr11 66136050 66136050 1 + C T COAD 66136059 - 66136039 66136079 41 GCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTT GCACCCTCTTCCTCAGCGGCCAGGGCCTGACTGGGATCTTT < 41bp 1 0.481751817726002 1 0.728572010993958 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC29A2 ENSG00000174669 CDS Human protein_coding chr11:66136059 chr11:66136050 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_19614 0 0 1 0 2 Cytosol 1 0.500231643921092 0.542855978012084 0.999536712157815 hm5C_site_20835 DeepMRMD:0.542855978012084;iRNA_m5C:0.999536712157815 20836 chr1 11080584 11080584 1 + C T COAD 11080572 + 11080552 11080592 41 GAGGATGAGCTGCGGGAGTTCTTCTCTCAGTACGGGGATGT GAGGATGAGCTGCGGGAGTTCTTCTCTCAGTATGGGGATGT < 41bp 1 0.519509063874428 1 0.0350258946418762 experiment 0.960981872251144 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TARDBP ENSG00000120948 CDS Human protein_coding chr1:11080572 chr1:11080584 synonymous SNV . 0 33 hm5C_associated_SNPs_19615 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20836 DeepMRMD:1;iRNA_m5C:0.999536712157815 20837 chr17 17697546 17697546 1 + G A COAD 17697528 + 17697508 17697548 41 CCCCTTCAGAAGGACAAGCTCCCTGAGAACCTGCTGTCGGA CCCCTTCAGAAGGACAAGCTCCCTGAGAACCTGCTGTCAGA < 41bp 1 0.115479547052977 1 0.046071469783783 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17697528 chr17:17697546 synonymous SNV . 0 39 hm5C_associated_SNPs_19616 0 0 1 0 0 chromatin 1 0.500231643921102 1 0.999536712157796 hm5C_site_20837 DeepMRMD:1;iRNA_m5C:0.999536712157796 20838 chr6 158449875 158449875 1 + C G COAD 158449888 + 158449868 158449908 41 ATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA ATCACTGGCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA < 41bp 1 0.0628654771223201 1 0.0402891337871552 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449888 chr6:158449875 nonsynonymous SNV 0.201 0 8 hm5C_associated_SNPs_19617 0 0 1 4 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20838 DeepMRMD:1;iRNA_m5C:0.999536712157815 20839 chr20 37168565 37168565 1 + C T COAD 37168578 + 37168558 37168598 41 TCTGTGTCTGGCTGACAGAGCACCCTGATATGCTTGATGAA TCTGTGTTTGGCTGACAGAGCACCCTGATATGCTTGATGAA < 41bp 1 0.18664559492365 1 0.131997883319855 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37168578 chr20:37168565 synonymous SNV . 0 8 hm5C_associated_SNPs_19618 0 0 1 0 1 Nucleus 1 0.500231643921616 1 0.999536712156768 hm5C_site_20839 DeepMRMD:1;iRNA_m5C:0.999536712156768 20840 chrX 128691347 128691347 1 + G A COAD 128691345 + 128691325 128691365 41 GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA GGGGACTGGATCAGAGAGCGCCACTTTGAAATCCCTGATGA < 41bp 1 0.240446099859204 1 0.0455695986747742 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128691345 chrX:128691347 nonsynonymous SNV 0.807 1 23 hm5C_associated_SNPs_19619 0 0 1 0 2 Cytosol 1 0.50023164392122 1 0.999536712157559 hm5C_site_20840 DeepMRMD:1;iRNA_m5C:0.999536712157559 20841 chr12 58001373 58001373 1 + G A COAD 58001367 + 58001347 58001387 41 AGTACGGCACCATTGTCATCCAGTACGTCTTCCCGCCCGGT AGTACGGCACCATTGTCATCCAGTACATCTTCCCGCCCGGT < 41bp 1 0.473634195453247 1 0.734605014324188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DTX3 ENSG00000178498 CDS Human protein_coding chr12:58001367 chr12:58001373 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_19620 0 0 1 0 0 exosome 1 0.500231643921254 0.530789971351624 0.999536712157493 hm5C_site_20841 DeepMRMD:0.530789971351624;iRNA_m5C:0.999536712157493 20842 chr19 50912085 50912085 1 + T C COAD 50912092 + 50912072 50912112 41 CTTCTCCTCGCTGTACCCGTCCATCATGATGGCCCACAACC CTTCTCCTCGCTGCACCCGTCCATCATGATGGCCCACAACC < 41bp 1 0.0240249045342005 1 0.0375967621803284 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912092 chr19:50912085 nonsynonymous SNV 0.991 4 14 hm5C_associated_SNPs_19621 0 0 1 0 2 Nucleus 1 0.500231385559379 1 0.999537228881243 hm5C_site_20842 DeepMRMD:1;iRNA_m5C:0.999537228881243 20843 chr19 14020737 14020737 1 + C T COAD 14020742 + 14020722 14020762 41 GGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCA GGCTTTGGTCGGGGGTCAGCCCCCAGCCCTGGAGAAGCTCA < 41bp 1 0.44775625830122 1 0.747197449207306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020742 chr19:14020737 synonymous SNV . 0 16 hm5C_associated_SNPs_19622 0 0 1 0 1 chromatin 1 0.500231643921092 0.505605101585388 0.999536712157815 hm5C_site_20843 DeepMRMD:0.505605101585388;iRNA_m5C:0.999536712157815 20844 chr19 14020737 14020737 1 + C T COAD 14020743 + 14020723 14020763 41 GCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAA GCTTTGGTCGGGGGTCAGCCCCCAGCCCTGGAGAAGCTCAA < 41bp 1 0.263359571079005 1 0.509347498416901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020743 chr19:14020737 synonymous SNV . 0 15 hm5C_associated_SNPs_19623 0 0 1 0 1 chromatin 1 0.500231643921093 0.981305003166198 0.999536712157815 hm5C_site_20844 DeepMRMD:0.981305003166198;iRNA_m5C:0.999536712157815 20845 chr19 14020737 14020737 1 + C T COAD 14020744 + 14020724 14020764 41 CTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAA CTTTGGTCGGGGGTCAGCCCCCAGCCCTGGAGAAGCTCAAA < 41bp 1 0.131976777530847 1 0.410099476575851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020744 chr19:14020737 synonymous SNV . 0 14 hm5C_associated_SNPs_19624 0 0 1 0 1 chromatin 1 0.500231643921224 1 0.999536712157552 hm5C_site_20845 DeepMRMD:1;iRNA_m5C:0.999536712157552 20846 chr19 14020737 14020737 1 + C T COAD 14020745 + 14020725 14020765 41 TTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAAG TTTGGTCGGGGGTCAGCCCCCAGCCCTGGAGAAGCTCAAAG < 41bp 1 0.446048095780597 1 0.43679141998291 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020745 chr19:14020737 synonymous SNV . 0 13 hm5C_associated_SNPs_19625 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_20846 DeepMRMD:1;iRNA_m5C:0.999536712157815 20847 chr14 90867640 90867640 1 + C T COAD 90867648 + 90867628 90867668 41 TGATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTG TGATAAAGATGGTGATGGCACCATCACAACAAAGGAACTTG < 41bp 1 0.0675624595270005 1 0.0989518761634827 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867648 chr14:90867640 synonymous SNV . 0 13 hm5C_associated_SNPs_19626 1 0 1 0 1 Ribosome 1 0.500231644141624 1 0.999536711716753 hm5C_site_20847 DeepMRMD:1;iRNA_m5C:0.999536711716753 not provided not provided 20848 chr14 90867640 90867640 1 + C T COAD 90867649 + 90867629 90867669 41 GATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTGG GATAAAGATGGTGATGGCACCATCACAACAAAGGAACTTGG < 41bp 1 0.436883489435176 1 0.382104426622391 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867649 chr14:90867640 synonymous SNV . 0 12 hm5C_associated_SNPs_19627 1 0 1 0 1 Ribosome 1 0.500231647319997 1 0.999536705360005 hm5C_site_20848 DeepMRMD:1;iRNA_m5C:0.999536705360005 not provided not provided 20849 chr12 6646155 6646155 1 + C G COAD 6646142 + 6646122 6646162 41 CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTGACCACCA < 41bp 1 0.446230483050657 1 0.161671191453934 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646142 chr12:6646155 nonsynonymous SNV 0.998 2 34 hm5C_associated_SNPs_19628 0 0 1 0 2 Ribosome 1 0.500230120655607 1 0.999539758688785 hm5C_site_20849 DeepMRMD:1;iRNA_m5C:0.999539758688785 20850 chr7 155532689 155532689 1 + T C COAD 155532698 + 155532678 155532718 41 CAGCAGCCGGATGCAGTGCCCCCAGCGCCAGGGGCTCCGGC CAGCAGCCGGACGCAGTGCCCCCAGCGCCAGGGGCTCCGGC < 41bp 1 0.314229905178768 1 0.340981900691986 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM33 ENSG00000184863 CDS Human protein_coding chr7:155532698 chr7:155532689 nonsynonymous SNV 0.975 1 12 hm5C_associated_SNPs_19629 0 0 1 0 1 Nucleus 1 0.500231683826829 1 0.999536632346343 hm5C_site_20850 DeepMRMD:1;iRNA_m5C:0.999536632346343 20851 chr16 2569578 2569578 1 + C T COAD 2569563 + 2569543 2569583 41 AGCTTCCTCCAGCTGGGCGCCGGCCTGAGCGTGGGCCTGAG AGCTTCCTCCAGCTGGGCGCCGGCCTGAGCGTGGGTCTGAG < 41bp 1 0.393471155578327 1 0.664148271083832 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569563 chr16:2569578 synonymous SNV . 0 36 hm5C_associated_SNPs_19630 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644182965 0.671703457832336 0.999536711634069 hm5C_site_20851 DeepMRMD:0.671703457832336;iRNA_m5C:0.999536711634069 20852 chr5 71648502 71648502 1 + A G COAD 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAGCCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.418146270790024 1 0.562787592411041 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648502 nonsynonymous SNV 0.068 0 7 hm5C_associated_SNPs_19632 0 0 1 0 2 chromatin 1 0.500231996170755 0.874424815177918 0.99953600765849 hm5C_site_20852 DeepMRMD:0.874424815177918;iRNA_m5C:0.99953600765849 20853 chr3 196533536 196533536 1 + G A COAD 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGCCCCACGACCGGATCATACGAA < 41bp 1 0.255238956746157 1 0.643704414367676 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533536 synonymous SNV . 0 24 hm5C_associated_SNPs_19633 0 0 1 0 2 Ribosome 1 0.500231643921092 0.712591171264648 0.999536712157815 hm5C_site_20853 DeepMRMD:0.712591171264648;iRNA_m5C:0.999536712157815 20854 chr16 67662324 67662324 1 + G A COAD 67662319 + 67662299 67662339 41 CACCCACACCGGGGAGAAGCCTTACGCCTGCAGCCACTGCG CACCCACACCGGGGAGAAGCCTTACACCTGCAGCCACTGCG < 41bp 1 0.195000676358301 1 0.161229699850082 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CTCF ENSG00000102974 CDS Human protein_coding chr16:67662319 chr16:67662324 nonsynonymous SNV 0.991 1 26 hm5C_associated_SNPs_19635 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157817 hm5C_site_20854 DeepMRMD:1;iRNA_m5C:0.999536712157817 20855 chr22 22040820 22040820 1 + A C COAD 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCACCGCGCTGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.291396219125371 1 0.197975695133209 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040820 nonsynonymous SNV 0.030 2 16 hm5C_associated_SNPs_19636 0 0 1 0 2 Cytosol 1 0.500231613328469 1 0.999536773343061 hm5C_site_20855 DeepMRMD:1;iRNA_m5C:0.999536773343061 20856 chr22 42273334 42273334 1 + C T COAD 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGCCTCTCCTTTAACCCTCTGACTTCCCTGCTGCAG < 41bp 1 0.0926865451922525 1 0.0191623270511627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273334 synonymous SNV . 0 23 hm5C_associated_SNPs_19637 0 0 1 0 1 Ribosome 1 0.500231643920396 1 0.999536712159208 hm5C_site_20856 DeepMRMD:1;iRNA_m5C:0.999536712159208 20857 chr3 25542773 25542773 1 + G A COAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGCCAATACTATCGACTCCAGAAGTGCTT < 41bp 1 0.172839097671543 1 0.0728573501110077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542773 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_19638 0 0 1 0 1 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_20857 DeepMRMD:1;iRNA_m5C:0.999536712157815 20858 chr15 63354448 63354448 1 + T A COAD 63354456 + 63354436 63354476 41 ATGAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG ATGAGGAAGAGAACAAGGTCCTTTCCGACAAGCTGAAGGAG < 41bp 1 0.0577551336996088 1 0.152798503637314 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63354456 chr15:63354448 nonsynonymous SNV 1.000 5 13 hm5C_associated_SNPs_19639 0 0 1 0 2 Ribosome 1 0.500231643921058 1 0.999536712157883 hm5C_site_20858 DeepMRMD:1;iRNA_m5C:0.999536712157883 20859 chr16 3707246 3707246 1 + G T COAD 3707253 + 3707233 3707273 41 AGACCCTCCCAGTGGTCATCCATCCGCCTGTGGACAAGCCC AGACCCTCCCAGTTGTCATCCATCCGCCTGTGGACAAGCCC < 41bp 1 0.120747560402106 1 0.0894695818424225 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707253 chr16:3707246 nonsynonymous SNV 0.824 4 14 hm5C_associated_SNPs_19640 0 0 1 0 2 Cytosol 1 0.500231643920966 1 0.999536712158069 hm5C_site_20859 DeepMRMD:1;iRNA_m5C:0.999536712158069 20860 chr1 166819257 166819257 1 + G A COAD 166819242 + 166819222 166819262 41 TCTTGAATGGCTTCCGGGGCCATGCCACAGATTCCGTGAAG TCTTGAATGGCTTCCGGGGCCATGCCACAGATTCCATGAAG < 41bp 1 0.234286665714575 1 0.138997554779053 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control POGK ENSG00000143157 CDS Human protein_coding chr1:166819242 chr1:166819257 nonsynonymous SNV 0.946 4 36 hm5C_associated_SNPs_19641 0 0 1 0 0 Nucleus 1 0.500231644312513 1 0.999536711374974 hm5C_site_20860 DeepMRMD:1;iRNA_m5C:0.999536711374974 20861 chr7 44806152 44806152 1 + G T COAD 44806140 + 44806120 44806160 41 CAAACCCTCCCCCAGCGTCCCGGCAGTCCTTGGGCCAAGCG CAAACCCTCCCCCAGCGTCCCGGCAGTCCTTGTGCCAAGCG < 41bp 1 0.646495572301199 1 0.444151878356934 experiment 0.707008855397602 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806140 chr7:44806152 nonsynonymous SNV 0.990 4 33 hm5C_associated_SNPs_19642 0 0 1 0 0 Cytosol 1 0.50023164294457 1 0.99953671411086 hm5C_site_20861 DeepMRMD:1;iRNA_m5C:0.99953671411086 20862 chr16 1550689 1550689 1 + C T COAD 1550684 + 1550664 1550704 41 CCGGATCCACCCCGAGGGGCCTCCCCTGAAATTCCAGGTGA CCGGATCCACCCCGAGGGGCCTCCCTTGAAATTCCAGGTGA < 41bp 1 0.39544521613925 1 0.0794975757598877 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550684 chr16:1550689 synonymous SNV . 0 26 hm5C_associated_SNPs_19643 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20862 DeepMRMD:1;iRNA_m5C:0.999536712157815 20863 chr8 48641569 48641569 1 + T A COAD 48641587 + 48641567 48641607 41 CCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA CCAGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA < 41bp 1 0.645022369571168 1 0.218952864408493 experiment 0.709955260857664 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641587 chr8:48641569 nonsynonymous SNV 0.989 4 3 hm5C_associated_SNPs_19644 0 0 1 0 3 Ribosome 1 0.50021840623119 1 0.99956318753762 hm5C_site_20863 DeepMRMD:1;iRNA_m5C:0.99956318753762 20864 chrX 129149437 129149437 1 + C T COAD 129149429 + 129149409 129149449 41 GCAACCACGGCCTGGGGGCTCCTTCGTTCCAGAGCAGGACC GCAACCACGGCCTGGGGGCTCCTTCGTTTCAGAGCAGGACC < 41bp 1 0.026043755768684 1 0.207943856716156 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129149429 chrX:129149437 nonsynonymous SNV 0.997 0 29 hm5C_associated_SNPs_19645 0 0 1 0 0 Cytosol 1 0.500231643887498 1 0.999536712225004 hm5C_site_20864 DeepMRMD:1;iRNA_m5C:0.999536712225004 20865 chr19 42406708 42406708 1 + T A COAD 42406702 + 42406682 42406722 41 GTTTGATGGTGCTGAGGGCTCCTGGTTCCAGAAAATCTCCT GTTTGATGGTGCTGAGGGCTCCTGGTACCAGAAAATCTCCT < 41bp 1 0.258006022239778 1 0.351497828960419 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42406702 chr19:42406708 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_19646 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_20865 DeepMRMD:1;iRNA_m5C:0.999536712157817 20866 chr14 24707730 24707730 1 + G A COAD 24707716 + 24707696 24707736 41 AAGCATGGTGAACCGGGGCTCAATGCTAGGGTCTGTGGAAA AAGCATGGTGAACCGGGGCTCAATGCTAGGGTCTATGGAAA < 41bp 1 0.46340360764968 1 0.461325347423553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GMPR2 ENSG00000100938 CDS Human protein_coding chr14:24707716 chr14:24707730 nonsynonymous SNV 0.016 1 35 hm5C_associated_SNPs_19647 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20866 DeepMRMD:1;iRNA_m5C:0.999536712157815 20867 chr17 694931 694931 1 + G C COAD 694913 + 694893 694933 41 CGGGTCTATGTGGCTGACAACTGTGGCCTTTATGCCCAGGC CGGGTCTATGTGGCTGACAACTGTGGCCTTTATGCCCACGC < 41bp 1 0.453189910319207 1 0.225541859865189 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRM3 ENSG00000171861 CDS Human protein_coding chr17:694913 chr17:694931 nonsynonymous SNV 0.167 1 39 hm5C_associated_SNPs_19648 0 0 1 0 0 chromatin 1 0.50023284088996 1 0.99953431822008 hm5C_site_20867 DeepMRMD:1;iRNA_m5C:0.99953431822008 20868 chr9 139244090 139244090 1 + G A COAD 139244104 + 139244084 139244124 41 AGCAGGGACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTA AGCAGGAACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTA < 41bp 1 0.368344880417664 1 0.430926203727722 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139244104 chr9:139244090 nonsynonymous SNV 0.942 1 7 hm5C_associated_SNPs_19649 0 0 1 0 1 Cytosol 1 0.500231643920967 1 0.999536712158066 hm5C_site_20868 DeepMRMD:1;iRNA_m5C:0.999536712158066 20869 chr1 150280539 150280539 1 + G A COAD 150280549 + 150280529 150280569 41 ATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT ATTATGAGAAACCATGCCGCCGGCGACAGAGGGAAAGCTAT < 41bp 1 0.675265837227999 1 0.64592981338501 experiment 0.649468325544002 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280549 chr1:150280539 synonymous SNV . 0 11 hm5C_associated_SNPs_19650 0 0 1 0 1 Cytosol 1 0.500231643921233 0.70814037322998 0.999536712157534 hm5C_site_20869 DeepMRMD:0.70814037322998;iRNA_m5C:0.999536712157534 20870 chr22 38013057 38013057 1 + G A COAD 38013067 + 38013047 38013087 41 GACACCAAGGGAGGCCAAGACTGAGGTTCTTGGGGTCCATA GACACCAAGGAAGGCCAAGACTGAGGTTCTTGGGGTCCATA < 41bp 1 0.418107784991085 1 0.053632527589798 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GGA1 ENSG00000100083;ENSG00000100083 exonic;splicing Human other chr22:38013067 chr22:38013057 nonsynonymous SNV 0.344 0 11 hm5C_associated_SNPs_19651 0 0 1 0 0 chromatin 1 0.500231643921085 1 0.99953671215783 hm5C_site_20870 DeepMRMD:1;iRNA_m5C:0.99953671215783 20871 chr2 74784101 74784101 1 + G A COAD 74784099 + 74784079 74784119 41 AGCCTTCCCTGAACCTGGTACTGCAACTGGCAGTGGCATCA AGCCTTCCCTGAACCTGGTACTACAACTGGCAGTGGCATCA < 41bp 1 0.469115564876858 1 0.432288706302643 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOK1 ENSG00000115325 CDS Human protein_coding chr2:74784099 chr2:74784101 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_19652 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20871 DeepMRMD:1;iRNA_m5C:0.999536712157815 20872 chr22 42273331 42273331 1 + C T COAD 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGCCTCTCCTTTAATCCCCTGACTTCCCTGCTGCAG < 41bp 1 0.303825408462937 1 0.0500078201293945 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273331 synonymous SNV . 0 20 hm5C_associated_SNPs_19653 0 0 1 0 2 Ribosome 1 0.500231643892027 1 0.999536712215947 hm5C_site_20872 DeepMRMD:1;iRNA_m5C:0.999536712215947 20873 chr11 46396322 46396322 1 + G A COAD 46396330 + 46396310 46396350 41 CTCCAGTGTGATGGAATGGACTTGACTCCCAAGATCCAGGA CTCCAGTGTGATAGAATGGACTTGACTCCCAAGATCCAGGA < 41bp 1 0.381468264404203 1 0.0507414042949677 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46396330 chr11:46396322 nonsynonymous SNV 0.946 4 13 hm5C_associated_SNPs_19654 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20873 DeepMRMD:1;iRNA_m5C:0.999536712157815 20874 chr1 109342878 109342878 1 + C T COAD 109342888 + 109342868 109342908 41 AAAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA AAAAGAATGGTCATATTGTTCCCAGTGTCCAGCAGTATGGA < 41bp 1 0.497010624768971 1 0.0275307595729828 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342888 chr1:109342878 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_19656 0 0 0 0 2 Nucleus 1 0.500231643916983 1 0.999536712166033 hm5C_site_20874 DeepMRMD:1;iRNA_m5C:0.999536712166033 20875 chr1 109342878 109342878 1 + C T COAD 109342889 + 109342869 109342909 41 AAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA AAAGAATGGTCATATTGTTCCCAGTGTCCAGCAGTATGGAA < 41bp 1 0.382629520711448 1 0.0530332922935486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342889 chr1:109342878 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_19657 0 0 0 0 2 Nucleus 1 0.500231641828078 1 0.999536716343844 hm5C_site_20875 DeepMRMD:1;iRNA_m5C:0.999536716343844 20876 chr12 57597296 57597296 1 + G A COAD 57597276 + 57597256 57597296 41 GACGCCGACTGCATGGACGGCAGCGACGAGGAGGCCTGCGG GACGCCGACTGCATGGACGGCAGCGACGAGGAGGCCTGCGA < 41bp 1 0.204167693565062 1 0.373159855604172 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57597276 chr12:57597296 nonsynonymous SNV 0.977 1 41 hm5C_associated_SNPs_19658 0 0 1 0 1 Exosome 1 0.50023164392109 1 0.999536712157819 hm5C_site_20876 DeepMRMD:1;iRNA_m5C:0.999536712157819 20877 chr6 31914178 31914178 1 + C T COAD 31914162 + 31914142 31914182 41 CTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCCCGGC CTCTTCAGGTGTGACCACCACTCCATGGTCTTTGGCTCGGC < 41bp 1 0.692826648047639 1 0.983625531196594 experiment 0.614346703904721 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CFB ENSG00000243649;ENSG00000244255 CDS Human other chr6:31914162 chr6:31914178 synonymous SNV . 0 37 hm5C_associated_SNPs_19659 0 0 1 0 1 chromatin 1 0.500231643756735 0.032748937606812 0.999536712486529 hm5C_site_20877 DeepMRMD:0.032748937606812;iRNA_m5C:0.999536712486529 20878 chr12 107254074 107254074 1 + T C COAD 107254054 + 107254034 107254074 41 CTGTTTTTGCAGTGGATAGTCTGCTGAAATACACTGGCTAT CTGTTTTTGCAGTGGATAGTCTGCTGAAATACACTGGCTAC < 41bp 1 0.677750755736086 1 0.608401894569397 experiment 0.644498488527827 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107254054 chr12:107254074 synonymous SNV . 0 41 hm5C_associated_SNPs_19660 0 0 1 0 1 Nucleus 1 0.500231643913678 0.783196210861206 0.999536712172644 hm5C_site_20878 DeepMRMD:0.783196210861206;iRNA_m5C:0.999536712172644 20879 chrX 48457292 48457292 1 + G T COAD 48457272 + 48457252 48457292 41 CCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTG CCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTT < 41bp 1 0.635745677463278 1 0.901914358139038 experiment 0.728508645073445 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457272 chrX:48457292 nonsynonymous SNV 0.998 1 41 hm5C_associated_SNPs_19661 0 0 1 0 1 Ribosome 1 0.500231643921092 0.196171283721924 0.999536712157815 hm5C_site_20879 DeepMRMD:0.196171283721924;iRNA_m5C:0.999536712157815 20880 chrX 48457292 48457292 1 + G T COAD 48457273 + 48457253 48457293 41 CAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTGC CAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTTC < 41bp 1 0.641662078455246 1 0.722640573978424 experiment 0.716675843089507 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457273 chrX:48457292 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_19662 0 0 1 0 1 Ribosome 1 0.500231643922063 0.554718852043152 0.999536712155875 hm5C_site_20880 DeepMRMD:0.554718852043152;iRNA_m5C:0.999536712155875 20881 chr8 146033183 146033183 1 + C T COAD 146033186 + 146033166 146033206 41 TTCGCGTGCACAGAGTGCGGCAAGGCGTTCTGCCGCAGGTT TTCGCGTGCACAGAGTGTGGCAAGGCGTTCTGCCGCAGGTT < 41bp 1 0.470987912467528 1 0.395728886127472 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146033186 chr8:146033183 synonymous SNV . 0 18 hm5C_associated_SNPs_19663 0 0 0 0 0 chromatin 1 0.500231643936394 1 0.999536712127213 hm5C_site_20881 DeepMRMD:1;iRNA_m5C:0.999536712127213 20882 chr1 214819438 214819438 1 + T A COAD 214819453 + 214819433 214819473 41 ATTCTTGATGCCGAGAATTCCAAAGCAGAAGTAGAGACTCT ATTCTAGATGCCGAGAATTCCAAAGCAGAAGTAGAGACTCT < 41bp 1 0.289959108091506 1 0.677535891532898 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214819453 chr1:214819438 synonymous SNV . 0 6 hm5C_associated_SNPs_19664 0 0 1 0 0 Nucleus 1 0.500231643946245 0.644928216934204 0.99953671210751 hm5C_site_20882 DeepMRMD:0.644928216934204;iRNA_m5C:0.99953671210751 20883 chr10 70101358 70101358 1 + A G COAD 70101359 + 70101339 70101379 41 AAGAACATCGATATATTGAACTCTTCTTGAATTCTACTCCT AAGAACATCGATATATTGAGCTCTTCTTGAATTCTACTCCT < 41bp 1 0.272361517432439 1 0.0424448251724243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70101359 chr10:70101358 synonymous SNV . 0 20 hm5C_associated_SNPs_19665 0 0 1 0 2 Cytosol 1 0.500348878744358 1 0.999302242511284 hm5C_site_20883 DeepMRMD:1;iRNA_m5C:0.999302242511284 20884 chr3 51624522 51624522 1 + A T COAD 51624531 + 51624511 51624551 41 GGAGGAGGAGGAGGAGGTGGCAGTGGAGGAGTGTGACAGGG GGAGGAGGAGGTGGAGGTGGCAGTGGAGGAGTGTGACAGGG < 41bp 1 0.665447612606056 1 0.686289489269257 experiment 0.669104774787888 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51624531 chr3:51624522 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_19666 0 0 1 0 1 chromatin 1 0.500231643921092 0.627421021461486 0.999536712157815 hm5C_site_20884 DeepMRMD:0.627421021461486;iRNA_m5C:0.999536712157815 20885 chrX 129149427 129149427 1 + C T COAD 129149429 + 129149409 129149449 41 GCAACCACGGCCTGGGGGCTCCTTCGTTCCAGAGCAGGACC GCAACCACGGCCTGGGGGTTCCTTCGTTCCAGAGCAGGACC < 41bp 1 0.0268619673115773 1 0.107416927814484 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129149429 chrX:129149427 synonymous SNV . 0 19 hm5C_associated_SNPs_19667 0 0 1 0 0 Cytosol 1 0.500231643906787 1 0.999536712186427 hm5C_site_20885 DeepMRMD:1;iRNA_m5C:0.999536712186427 20886 chr16 722937 722937 1 + A C COAD 722951 + 722931 722971 41 CATTACATGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC CATTACCTGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC < 41bp 1 0.339544883786577 1 0.249110460281372 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722951 chr16:722937 nonsynonymous SNV 0.951 1 7 hm5C_associated_SNPs_19668 0 0 1 0 1 Ribosome 1 0.500231648983692 1 0.999536702032617 hm5C_site_20886 DeepMRMD:1;iRNA_m5C:0.999536702032617 20887 chr15 32921003 32921003 1 + G C COAD 32920986 + 32920966 32921006 41 CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTGGTA CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTCGTA < 41bp 1 0.425591033429792 1 0.351754784584045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32920986 chr15:32921003 nonsynonymous SNV 0.019 3 38 hm5C_associated_SNPs_19669 0 0 0 0 2 Ribosome 1 0.500232898883746 1 0.999534202232507 hm5C_site_20887 DeepMRMD:1;iRNA_m5C:0.999534202232507 20888 chr8 41355101 41355101 1 + G A COAD 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGACCAGTCATATCTCGAAGGTTGT < 41bp 1 0.168173102639989 1 0.188007533550262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355101 nonsynonymous SNV 0.968 1 19 hm5C_associated_SNPs_19670 0 0 1 2 2 Ribosome 1 0.500231643933443 1 0.999536712133114 hm5C_site_20888 DeepMRMD:1;iRNA_m5C:0.999536712133114 20889 chr5 140516543 140516543 1 + C T COAD 140516546 + 140516526 140516566 41 TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTC TCCATCAACGCGGACAATGGCCACCTGTTTGCCCTCAGGTC < 41bp 1 0.182346705796775 1 0.061847597360611 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140516546 chr5:140516543 synonymous SNV . 0 18 hm5C_associated_SNPs_19671 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20889 DeepMRMD:1;iRNA_m5C:0.999536712157815 20890 chr13 31903690 31903690 1 + C T COAD 31903694 + 31903674 31903714 41 CATCAAGTTCCCATATCGTTCCACAAACACTGGAACATCGA CATCAAGTTCCCATATTGTTCCACAAACACTGGAACATCGA < 41bp 1 0.428641577292033 1 0.129657834768295 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31903694 chr13:31903690 nonsynonymous SNV 0.927 4 17 hm5C_associated_SNPs_19673 0 0 0 2 1 Ribosome 1 0.500231645084447 1 0.999536709831107 hm5C_site_20890 DeepMRMD:1;iRNA_m5C:0.999536709831107 20891 chr12 131488796 131488796 1 + G A COAD 131488788 + 131488768 131488808 41 TTCCTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA TTCCTCCCATTACCGCTTCCCGGCCCACAGGCAGAGCTTCA < 41bp 1 0.215391763513902 1 0.473623096942902 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488788 chr12:131488796 nonsynonymous SNV 0.024 4 29 hm5C_associated_SNPs_19674 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_20891 DeepMRMD:1;iRNA_m5C:0.999536712157814 20892 chr12 131488796 131488796 1 + G A COAD 131488791 + 131488771 131488811 41 CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC CTCCCATTACCGCTTCCCGGCCCACAGGCAGAGCTTCATCC < 41bp 1 0.0360613180033132 1 0.0239941775798798 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488791 chr12:131488796 nonsynonymous SNV 0.024 4 26 hm5C_associated_SNPs_19675 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_20892 DeepMRMD:1;iRNA_m5C:0.999536712157815 20893 chr12 131488796 131488796 1 + G A COAD 131488792 + 131488772 131488812 41 TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA TCCCATTACCGCTTCCCGGCCCACAGGCAGAGCTTCATCCA < 41bp 1 0.317936962068999 1 0.133228093385696 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488792 chr12:131488796 nonsynonymous SNV 0.024 4 25 hm5C_associated_SNPs_19676 0 0 1 0 1 chromatin 1 0.500231643634935 1 0.999536712730129 hm5C_site_20893 DeepMRMD:1;iRNA_m5C:0.999536712730129 20894 chr12 131488796 131488796 1 + G A COAD 131488793 + 131488773 131488813 41 CCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAG CCCATTACCGCTTCCCGGCCCACAGGCAGAGCTTCATCCAG < 41bp 1 0.414246000474428 1 0.148070096969604 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488793 chr12:131488796 nonsynonymous SNV 0.024 4 24 hm5C_associated_SNPs_19677 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_20894 DeepMRMD:1;iRNA_m5C:0.999536712157815 20895 chr12 131488796 131488796 1 + G A COAD 131488795 + 131488775 131488815 41 CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGAT CATTACCGCTTCCCGGCCCACAGGCAGAGCTTCATCCAGAT < 41bp 1 0.46201417388814 1 0.795790791511536 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488795 chr12:131488796 nonsynonymous SNV 0.024 4 22 hm5C_associated_SNPs_19678 0 0 1 0 1 chromatin 1 0.500231643921092 0.408418416976928 0.999536712157815 hm5C_site_20895 DeepMRMD:0.408418416976928;iRNA_m5C:0.999536712157815 20896 chr12 131488796 131488796 1 + G A COAD 131488799 + 131488779 131488819 41 ACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGATCCCC ACCGCTTCCCGGCCCACAGGCAGAGCTTCATCCAGATCCCC < 41bp 1 0.425656439698631 1 0.680865883827209 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488799 chr12:131488796 nonsynonymous SNV 0.024 4 18 hm5C_associated_SNPs_19679 0 0 1 0 1 chromatin 1 0.500231643921092 0.638268232345582 0.999536712157815 hm5C_site_20896 DeepMRMD:0.638268232345582;iRNA_m5C:0.999536712157815 20897 chr6 151671196 151671196 1 + G A COAD 151671207 + 151671187 151671227 41 CTCCGGACAGCCAGGAGGAGCAAAAGGGCGAGAGCTCTGCC CTCCGGACAACCAGGAGGAGCAAAAGGGCGAGAGCTCTGCC < 41bp 1 0.572692576430679 1 0.717722654342651 experiment 0.854614847138641 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151671207 chr6:151671196 nonsynonymous SNV 0.038 4 10 hm5C_associated_SNPs_19680 0 0 1 0 0 Ribosome 1 0.500231643921092 0.564554691314698 0.999536712157815 hm5C_site_20897 DeepMRMD:0.564554691314698;iRNA_m5C:0.999536712157815 20898 chr19 579609 579609 1 + C T COAD 579629 + 579609 579649 41 CGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG TGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG < 41bp 1 0.454694494364171 1 0.436221361160278 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579629 chr19:579609 synonymous SNV . 0 1 hm5C_associated_SNPs_19681 0 0 1 0 1 Ribosome 1 0.500231643921096 1 0.999536712157809 hm5C_site_20898 DeepMRMD:1;iRNA_m5C:0.999536712157809 20899 chr16 2079755 2079755 1 + G A COAD 2079750 + 2079730 2079770 41 CCGAAGCCAGACTGGGCACACACCGGCAGCCACAGCTCCGA CCGAAGCCAGACTGGGCACACACCGACAGCCACAGCTCCGA < 41bp 1 0.644030381207458 1 0.0919854342937469 experiment 0.711939237585083 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2079750 chr16:2079755 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_19682 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20899 DeepMRMD:1;iRNA_m5C:0.999536712157815 20900 chr12 122079104 122079104 1 + T C COAD 122079102 + 122079082 122079122 41 AACATCGAGGCGGTGAGCAACGTGCACAATCTCAACTCGGT AACATCGAGGCGGTGAGCAACGCGCACAATCTCAACTCGGT < 41bp 1 0.346401316789952 1 0.277368903160095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ORAI1 ENSG00000182500 CDS Human other chr12:122079102 chr12:122079104 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_19683 0 0 1 0 0 Endoplasmic reticulum 1 0.500232981994361 1 0.999534036011279 hm5C_site_20900 DeepMRMD:1;iRNA_m5C:0.999534036011279 20901 chr8 59058939 59058939 1 + C T COAD 59058936 + 59058916 59058956 41 CCCAACCCCAAGAGGCTCAGCGCCGTGGAGAGGCTGGAGGC CCCAACCCCAAGAGGCTCAGCGCTGTGGAGAGGCTGGAGGC < 41bp 1 0.659492483035734 1 0.286822855472565 experiment 0.681015033928532 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM110B ENSG00000169122 CDS Human protein_coding chr8:59058936 chr8:59058939 synonymous SNV . 0 24 hm5C_associated_SNPs_19684 0 0 0 0 0 Cytosol 1 0.500231736140166 1 0.999536527719668 hm5C_site_20901 DeepMRMD:1;iRNA_m5C:0.999536527719668 20902 chr12 57919747 57919747 1 + T C COAD 57919754 + 57919734 57919774 41 CCAAGGCACAGCATCCCCCACTACCCCCTCCCAGCACTTTA CCAAGGCACAGCACCCCCCACTACCCCCTCCCAGCACTTTA < 41bp 1 0.118225308960824 1 0.0383099317550659 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919754 chr12:57919747 synonymous SNV . 0 14 hm5C_associated_SNPs_19685 0 0 1 0 0 chromatin 1 0.500231633457148 1 0.999536733085705 hm5C_site_20902 DeepMRMD:1;iRNA_m5C:0.999536733085705 20903 chr3 38180279 38180279 1 + C T COAD 38180284 + 38180264 38180304 41 CTCAACATGCGAGTGCGGCGCCGCCTGTCTCTGTTCTTGAA CTCAACATGCGAGTGTGGCGCCGCCTGTCTCTGTTCTTGAA < 41bp 1 0.166931553327716 1 0.12940776348114 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MYD88 ENSG00000172936 CDS Human protein_coding chr3:38180284 chr3:38180279 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_19686 0 0 1 0 0 Ribosome 1 0.500231643921418 1 0.999536712157165 hm5C_site_20903 DeepMRMD:1;iRNA_m5C:0.999536712157165 20904 chr3 184042675 184042675 1 + C T COAD 184042681 + 184042661 184042701 41 GGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAA GGCAGGCAGAGGAATGAGGACGCCTGAAGGAAGAGCTGGAA < 41bp 1 0.476973377875804 1 0.582316100597382 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042681 chr3:184042675 stopgain 0.991 0 15 hm5C_associated_SNPs_19687 0 0 1 0 1 Nucleus 1 0.500231654021421 0.835367798805236 0.999536691957158 hm5C_site_20904 DeepMRMD:0.835367798805236;iRNA_m5C:0.999536691957158 20905 chr5 148808549 148808549 1 + A G COAD 148808551 + 148808531 148808571 41 GTTGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAAGAGAG GTTGGGAGTCTGAGATGAGGCACTGTAGCTCAGGAAGAGAG < 41bp 1 0.463530891098651 1 0.144989401102066 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808551 chr5:148808549 . . 0 19 hm5C_associated_SNPs_19689 0 0 1 0 1 unknown 1 0.500231643920093 1 0.999536712159814 hm5C_site_20905 DeepMRMD:1;iRNA_m5C:0.999536712159814 20906 chr5 148808549 148808549 1 + A G COAD 148808553 + 148808533 148808573 41 TGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAAGAGAGAA TGGGAGTCTGAGATGAGGCACTGTAGCTCAGGAAGAGAGAA < 41bp 1 0.347478486064196 1 0.0452137291431427 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808553 chr5:148808549 . . 0 17 hm5C_associated_SNPs_19690 0 0 1 0 1 unknown 1 0.500231643921083 1 0.999536712157834 hm5C_site_20906 DeepMRMD:1;iRNA_m5C:0.999536712157834 20907 chr5 148808549 148808549 1 + A G COAD 148808559 + 148808539 148808579 41 TCTGAGATGAAGCACTGTAGCTCAGGAAGAGAGAAGTTGTT TCTGAGATGAGGCACTGTAGCTCAGGAAGAGAGAAGTTGTT < 41bp 1 0.64502519192434 1 0.0480276346206665 experiment 0.709949616151319 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808559 chr5:148808549 . . 0 11 hm5C_associated_SNPs_19691 0 0 1 0 1 unknown 1 0.500231644588424 1 0.999536710823152 hm5C_site_20907 DeepMRMD:1;iRNA_m5C:0.999536710823152 20908 chr9 129458212 129458212 1 + C T COAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTATGGCAGCAGCGACCCCTTCCAGCAGGG < 41bp 1 0.556227234771055 1 0.652734398841858 experiment 0.88754553045789 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458212 synonymous SNV . 0 15 hm5C_associated_SNPs_19692 0 0 0 0 3 Endoplasmic reticulum 1 0.500231643921092 0.694531202316284 0.999536712157815 hm5C_site_20908 DeepMRMD:0.694531202316284;iRNA_m5C:0.999536712157815 20909 chrX 57405161 57405161 1 + C T COAD 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC TGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC < 41bp 1 0.532413668223638 1 0.238593965768814 experiment 0.935172663552724 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405161 nonsynonymous SNV 0.237 3 1 hm5C_associated_SNPs_19693 0 0 0 0 2 nucleus 1 0.500231639759537 1 0.999536720480926 hm5C_site_20909 DeepMRMD:1;iRNA_m5C:0.999536720480926 20910 chr6 160481649 160481649 1 + G T COAD 160481661 + 160481641 160481681 41 AAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCCG AAATTCCTTCATCAAGATATCGACTCTGGGCAAGGGATCCG < 41bp 1 0.139230178086723 1 0.36960780620575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160481661 chr6:160481649 synonymous SNV . 0 9 hm5C_associated_SNPs_19694 0 0 1 0 1 Endoplasmic reticulum 1 0.500231640362498 1 0.999536719275004 hm5C_site_20910 DeepMRMD:1;iRNA_m5C:0.999536719275004 20911 chrX 37984553 37984553 1 + A G COAD 37984551 + 37984531 37984571 41 GATTGTTTTTTCTCATGCAGCTACCTGCTCCCTGATGATAG GATTGTTTTTTCTCATGCAGCTGCCTGCTCCCTGATGATAG < 41bp 1 0.168312614463708 1 0.106380522251129 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37984551 chrX:37984553 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_19695 0 0 0 0 1 cytosol 1 0.500231643613152 1 0.999536712773695 hm5C_site_20911 DeepMRMD:1;iRNA_m5C:0.999536712773695 20912 chr10 103291074 103291074 1 + T G COAD 103291084 + 103291064 103291104 41 TATCCTAAAATTATACAAGACATTGAGGTAAGAATCTATGT TATCCTAAAAGTATACAAGACATTGAGGTAAGAATCTATGT < 41bp 1 0.0594281935377365 1 0.0188096165657043 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103291084 chr10:103291074 nonsynonymous SNV 0.999 4 11 hm5C_associated_SNPs_19696 0 0 1 0 2 chromatin 1 0.500231649766473 1 0.999536700467054 hm5C_site_20912 DeepMRMD:1;iRNA_m5C:0.999536700467054 20913 chr11 67815433 67815433 1 + C T COAD 67815417 + 67815397 67815437 41 CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATTGATC < 41bp 1 0.00777699490768512 1 0.0396702885627747 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815417 chr11:67815433 synonymous SNV . 0 37 hm5C_associated_SNPs_19697 0 0 0 0 2 Nucleus 1 0.500231643920749 1 0.999536712158503 hm5C_site_20913 DeepMRMD:1;iRNA_m5C:0.999536712158503 20914 chr11 67815433 67815433 1 + C T COAD 67815437 + 67815417 67815457 41 CCTACCCCTTTGGCATCGATCCTGTGAGTCCTGGGATGGAG CCTACCCCTTTGGCATTGATCCTGTGAGTCCTGGGATGGAG < 41bp 1 0.213628749428339 1 0.144443154335022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815437 chr11:67815433 synonymous SNV . 0 17 hm5C_associated_SNPs_19698 0 0 0 0 2 Nucleus 1 0.500231643921132 1 0.999536712157735 hm5C_site_20914 DeepMRMD:1;iRNA_m5C:0.999536712157735 20915 chr21 37781679 37781679 1 + G A COAD 37781678 + 37781658 37781698 41 AATTAATCCATTAGGCCCATCGCTCATCTTCCATGTCCTGG AATTAATCCATTAGGCCCATCACTCATCTTCCATGTCCTGG < 41bp 1 0.0919376987370309 1 0.0479721128940582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37781678 chr21:37781679 nonsynonymous SNV 0.596 1 22 hm5C_associated_SNPs_19699 0 0 0 0 2 Ribosome 1 0.500231658875454 1 0.999536682249092 hm5C_site_20915 DeepMRMD:1;iRNA_m5C:0.999536682249092 20916 chr20 2635158 2635158 1 + G A COAD 2635143 + 2635123 2635163 41 TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCACAATA < 41bp 1 0.55487594392449 1 0.196308076381683 experiment 0.89024811215102 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635143 chr20:2635158 nonsynonymous SNV 0.976 1 36 hm5C_associated_SNPs_19700 0 0 1 0 2 Cytosol 1 0.500231643920967 1 0.999536712158066 hm5C_site_20916 DeepMRMD:1;iRNA_m5C:0.999536712158066 20917 chr20 2635158 2635158 1 + G A COAD 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGCCACAATACAGGAGGAGTTAGG < 41bp 1 0.524511698274936 1 0.20717790722847 experiment 0.950976603450127 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635158 nonsynonymous SNV 0.976 1 22 hm5C_associated_SNPs_19701 0 0 1 0 2 Cytosol 1 0.500231643929679 1 0.999536712140642 hm5C_site_20917 DeepMRMD:1;iRNA_m5C:0.999536712140642 20918 chr2 162091890 162091890 1 + C T COAD 162091882 + 162091862 162091902 41 AAGCCCTTTCCTAATCAAGACAGTGACTCGGTGGTACTAAG AAGCCCTTTCCTAATCAAGACAGTGACTTGGTGGTACTAAG < 41bp 1 0.330987642685577 1 0.138175904750824 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TANK ENSG00000136560 CDS Human protein_coding chr2:162091882 chr2:162091890 nonsynonymous SNV 0.917 0 29 hm5C_associated_SNPs_19702 0 0 1 0 1 Cytosol 1 0.500231643921072 1 0.999536712157857 hm5C_site_20918 DeepMRMD:1;iRNA_m5C:0.999536712157857 20919 chr3 184021822 184021822 1 + C A COAD 184021833 + 184021813 184021853 41 GACTATGTTCTCCACAACAGCAACACCATGAGACTTGGTTC GACTATGTTATCCACAACAGCAACACCATGAGACTTGGTTC < 41bp 1 0.537175838805881 1 0.368222445249557 experiment 0.925648322388238 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021833 chr3:184021822 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_19703 0 0 1 0 2 Ribosome 1 0.500231649477287 1 0.999536701045426 hm5C_site_20919 DeepMRMD:1;iRNA_m5C:0.999536701045426 20920 chr8 126034024 126034024 1 + G A COAD 126034007 + 126033987 126034027 41 TATTACAGATTGTCTCCTAACCCTCTAGTTTTAATTGGACA TATTACAGATTGTCTCCTAACCCTCTAGTTTTAATTGAACA < 41bp 1 0.0373449882646356 1 0.0474207699298859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SQLE ENSG00000104549 CDS Human protein_coding chr8:126034007 chr8:126034024 nonsynonymous SNV 0.792 3 38 hm5C_associated_SNPs_19704 0 0 1 0 1 Nucleus 1 0.500229280443464 1 0.999541439113073 hm5C_site_20920 DeepMRMD:1;iRNA_m5C:0.999541439113073 20921 chr10 43292259 43292259 1 + G T COAD 43292254 + 43292234 43292274 41 AGAAGGGGAAGCGGAGGAAGCTGATGAAAGCAGTGAAGAAG AGAAGGGGAAGCGGAGGAAGCTGATTAAAGCAGTGAAGAAG < 41bp 1 0.590573971674027 1 0.368337154388428 experiment 0.818852056651947 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292254 chr10:43292259 stopgain 0.989 1 26 hm5C_associated_SNPs_19705 0 0 1 0 0 chromatin 1 0.500231367240827 1 0.999537265518346 hm5C_site_20921 DeepMRMD:1;iRNA_m5C:0.999537265518346 20922 chr10 43292259 43292259 1 + G T COAD 43292264 + 43292244 43292284 41 GCGGAGGAAGCTGATGAAAGCAGTGAAGAAGAGGACTGCAC GCGGAGGAAGCTGATTAAAGCAGTGAAGAAGAGGACTGCAC < 41bp 1 0.607470163313252 1 0.475530862808228 experiment 0.785059673373496 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292264 chr10:43292259 stopgain 0.989 1 16 hm5C_associated_SNPs_19706 0 0 1 0 0 chromatin 1 0.500231644964021 1 0.999536710071959 hm5C_site_20922 DeepMRMD:1;iRNA_m5C:0.999536710071959 20923 chr1 23408772 23408772 1 + C A COAD 23408765 + 23408745 23408785 41 TGATCCCTGGGCTCGGGGCTCTTATTCCTATGTTGCTGCAG TGATCCCTGGGCTCGGGGCTCTTATTCATATGTTGCTGCAG < 41bp 1 0.127601448281764 1 0.14509305357933 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1A ENSG00000004487 CDS Human protein_coding chr1:23408765 chr1:23408772 synonymous SNV . 0 28 hm5C_associated_SNPs_19708 0 0 1 0 2 Cytosol 1 0.500277566895925 1 0.99944486620815 hm5C_site_20923 DeepMRMD:1;iRNA_m5C:0.99944486620815 20924 chr17 685765 685765 1 + A G COAD 685745 + 685725 685765 41 GCCCAGTGAAAGTGGTGTTTCCTTCCGGAGAGGTGGTGGAA GCCCAGTGAAAGTGGTGTTTCCTTCCGGAGAGGTGGTGGAG < 41bp 1 0.0555706576339865 1 0.0654690563678741 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRM3 ENSG00000171861 CDS Human protein_coding chr17:685745 chr17:685765 synonymous SNV . 0 41 hm5C_associated_SNPs_19709 0 0 1 0 0 chromatin 1 0.500231643921068 1 0.999536712157865 hm5C_site_20924 DeepMRMD:1;iRNA_m5C:0.999536712157865 20925 chr3 52237955 52237955 1 + G T COAD 52237938 + 52237918 52237958 41 TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAAC TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAATAAC < 41bp 1 0.360881847317076 1 0.0937609076499939 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52237938 chr3:52237955 nonsynonymous SNV 0.994 1 38 hm5C_associated_SNPs_19710 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20925 DeepMRMD:1;iRNA_m5C:0.999536712157815 20926 chr20 32659984 32659984 1 + A C COAD 32660003 + 32659983 32660023 41 AAATCAGATGTGGAGACCATCTTCTCTAAGTATGGCCGTGT ACATCAGATGTGGAGACCATCTTCTCTAAGTATGGCCGTGT < 41bp 1 0.204129702935565 1 0.0748936235904694 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32660003 chr20:32659984 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_19711 0 0 1 0 0 Cytosol 1 0.500231643921102 1 0.999536712157797 hm5C_site_20926 DeepMRMD:1;iRNA_m5C:0.999536712157797 20927 chr2 27258560 27258560 1 + C A COAD 27258544 + 27258524 27258564 41 GCAGCAGGGTCTCTGGAGCTCTTTTTTGACCACTGTCTGTT GCAGCAGGGTCTCTGGAGCTCTTTTTTGACCACTGTATGTT < 41bp 1 0.12804429236674 1 0.0468843579292297 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27258544 chr2:27258560 nonsynonymous SNV 0.994 0 37 hm5C_associated_SNPs_19712 0 0 1 0 2 Ribosome 1 0.500231643921108 1 0.999536712157783 hm5C_site_20927 DeepMRMD:1;iRNA_m5C:0.999536712157783 20928 chrX 48399814 48399814 1 + G A COAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTCATCCGAACCTTTGATTTGAGTGG < 41bp 1 0.496495783483329 1 0.405364185571671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399814 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_19713 0 0 0 0 3 nucleolus 1 0.500231645892906 1 0.999536708214188 hm5C_site_20928 DeepMRMD:1;iRNA_m5C:0.999536708214188 20929 chr5 71499406 71499406 1 + G T COAD 71499412 + 71499392 71499432 41 CCAGGAACTACCAAGACGACCAAGTCATCTGCTGTGCCCCC CCAGGAACTACCAATACGACCAAGTCATCTGCTGTGCCCCC < 41bp 1 0.209231266140505 1 0.839129209518433 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71499412 chr5:71499406 nonsynonymous SNV 0.705 4 15 hm5C_associated_SNPs_19714 0 0 1 0 1 Cytosol 1 0.500231653417494 0.321741580963134 0.999536693165011 hm5C_site_20929 DeepMRMD:0.321741580963134;iRNA_m5C:0.999536693165011 20930 chr8 22862116 22862116 1 + G A COAD 22862102 + 22862082 22862122 41 GCTGGCCACGCATGTGCCCACAGTATGGGCCATCGACCAAT GCTGGCCACGCATGTGCCCACAGTATGGGCCATCAACCAAT < 41bp 1 0.653243154630163 1 0.101958334445953 experiment 0.693513690739673 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862102 chr8:22862116 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_19715 0 0 0 0 1 cytosol 1 0.500231644246373 1 0.999536711507254 hm5C_site_20930 DeepMRMD:1;iRNA_m5C:0.999536711507254 20931 chr1 154947236 154947236 1 + A C COAD 154947230 + 154947210 154947250 41 AACCGAGCGATCATGTCGCACAAACAAATTTACTATTCGGA AACCGAGCGATCATGTCGCACAAACACATTTACTATTCGGA < 41bp 1 0.0739223711454852 1 0.0730399787425995 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS1B ENSG00000173207 CDS Human protein_coding chr1:154947230 chr1:154947236 nonsynonymous SNV 0.996 2 27 hm5C_associated_SNPs_19716 0 0 1 0 1 Ribosome 1 0.5002316439302 1 0.9995367121396 hm5C_site_20931 DeepMRMD:1;iRNA_m5C:0.9995367121396 20932 chr7 142459755 142459755 1 + A G COAD 142459739 + 142459719 142459759 41 TACGACAGGAAGACTCTGAACAATGACATCATGTTAATCAA TACGACAGGAAGACTCTGAACAATGACATCATGTTAGTCAA < 41bp 1 0.51089256457237 1 0.164885938167572 experiment 0.978214870855261 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459739 chr7:142459755 nonsynonymous SNV 0.316 3 37 hm5C_associated_SNPs_19717 0 0 0 0 0 Cytosol 1 0.500231644891676 1 0.999536710216647 hm5C_site_20932 DeepMRMD:1;iRNA_m5C:0.999536710216647 20933 chr7 142459755 142459755 1 + A G COAD 142459745 + 142459725 142459765 41 AGGAAGACTCTGAACAATGACATCATGTTAATCAAGCTCTC AGGAAGACTCTGAACAATGACATCATGTTAGTCAAGCTCTC < 41bp 1 0.540246068867805 1 0.114057779312134 experiment 0.91950786226439 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459745 chr7:142459755 nonsynonymous SNV 0.316 3 31 hm5C_associated_SNPs_19718 0 0 0 0 0 Cytosol 1 0.500234550133062 1 0.999530899733875 hm5C_site_20933 DeepMRMD:1;iRNA_m5C:0.999530899733875 20934 chr7 142459755 142459755 1 + A G COAD 142459748 + 142459728 142459768 41 AAGACTCTGAACAATGACATCATGTTAATCAAGCTCTCCTC AAGACTCTGAACAATGACATCATGTTAGTCAAGCTCTCCTC < 41bp 1 0.594802216495931 1 0.0637581944465637 experiment 0.810395567008138 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459748 chr7:142459755 nonsynonymous SNV 0.316 3 28 hm5C_associated_SNPs_19719 0 0 0 0 0 Cytosol 1 0.500231672476015 1 0.99953665504797 hm5C_site_20934 DeepMRMD:1;iRNA_m5C:0.99953665504797 20935 chr7 142459755 142459755 1 + A G COAD 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATGACATCATGTTAGTCAAGCTCTCCTCACGTGCAGT < 41bp 1 0.418562985732745 1 0.616695880889893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459755 nonsynonymous SNV 0.316 3 19 hm5C_associated_SNPs_19720 0 0 0 0 0 Cytosol 1 0.500231644024775 0.766608238220214 0.999536711950449 hm5C_site_20935 DeepMRMD:0.766608238220214;iRNA_m5C:0.999536711950449 20936 chr7 142459755 142459755 1 + A G COAD 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATGACATCATGTTAGTCAAGCTCTCCTCACGTGCAGTAATC < 41bp 1 0.16354318493355 1 0.0320864319801331 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459755 nonsynonymous SNV 0.316 3 15 hm5C_associated_SNPs_19721 0 0 0 0 0 Cytosol 1 0.50023208125657 1 0.999535837486859 hm5C_site_20936 DeepMRMD:1;iRNA_m5C:0.999535837486859 20937 chr7 142459755 142459755 1 + A G COAD 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA GACATCATGTTAGTCAAGCTCTCCTCACGTGCAGTAATCAA < 41bp 1 0.478062754690592 1 0.537684977054596 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459755 nonsynonymous SNV 0.316 3 13 hm5C_associated_SNPs_19722 0 0 0 0 0 Cytosol 1 0.500231644098827 0.924630045890808 0.999536711802346 hm5C_site_20937 DeepMRMD:0.924630045890808;iRNA_m5C:0.999536711802346 20938 chr7 142459755 142459755 1 + A G COAD 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG CATCATGTTAGTCAAGCTCTCCTCACGTGCAGTAATCAACG < 41bp 1 0.340509164107149 1 0.215614825487137 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459755 nonsynonymous SNV 0.316 3 11 hm5C_associated_SNPs_19723 0 0 0 0 0 Cytosol 1 0.500231676681117 1 0.999536646637766 hm5C_site_20938 DeepMRMD:1;iRNA_m5C:0.999536646637766 20939 chr7 142459755 142459755 1 + A G COAD 142459766 + 142459746 142459786 41 ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC ATCATGTTAGTCAAGCTCTCCTCACGTGCAGTAATCAACGC < 41bp 1 0.406949586987529 1 0.270171195268631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459766 chr7:142459755 nonsynonymous SNV 0.316 3 10 hm5C_associated_SNPs_19724 0 0 0 0 0 Cytosol 1 0.500232147633646 1 0.999535704732708 hm5C_site_20939 DeepMRMD:1;iRNA_m5C:0.999535704732708 20940 chr7 142459755 142459755 1 + A G COAD 142459770 + 142459750 142459790 41 TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC TGTTAGTCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC < 41bp 1 0.371284756997682 1 0.124470174312592 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459770 chr7:142459755 nonsynonymous SNV 0.316 3 6 hm5C_associated_SNPs_19726 0 0 0 0 0 Cytosol 1 0.500231643936639 1 0.999536712126722 hm5C_site_20940 DeepMRMD:1;iRNA_m5C:0.999536712126722 20941 chr9 79996924 79996924 1 + G A COAD 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAGAGTCTGCAACCTCCTCGGTTCTTC < 41bp 1 0.558466004781052 1 0.654876947402954 experiment 0.883067990437896 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996924 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_19728 0 0 1 0 2 Nucleus 1 0.500231646215533 0.690246105194092 0.999536707568934 hm5C_site_20941 DeepMRMD:0.690246105194092;iRNA_m5C:0.999536707568934 20942 chr10 93756295 93756295 1 + T C COAD 93756310 + 93756290 93756330 41 CAGTGTCAAACAAGAGGGTGCAATTGAAGCACTTGCCTGTA CAGTGCCAAACAAGAGGGTGCAATTGAAGCACTTGCCTGTA < 41bp 1 0.110095085736136 1 0.0485715568065643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93756310 chr10:93756295 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_19730 0 0 1 0 1 Nucleus 1 0.500231643922316 1 0.999536712155367 hm5C_site_20942 DeepMRMD:1;iRNA_m5C:0.999536712155367 20943 chr2 86360314 86360314 1 + G A COAD 86360303 + 86360283 86360323 41 TTTTTGCCTTCATCACAGTTCCAAGTTCTTCGATTTGATTT TTTTTGCCTTCATCACAGTTCCAAGTTCTTCAATTTGATTT < 41bp 1 0.0924328539573511 1 0.0436755418777466 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360303 chr2:86360314 nonsynonymous SNV 0.562 0 32 hm5C_associated_SNPs_19731 0 0 1 0 2 Nucleus 1 0.500231639582765 1 0.99953672083447 hm5C_site_20943 DeepMRMD:1;iRNA_m5C:0.99953672083447 20944 chr10 16526624 16526624 1 + A C COAD 16526619 + 16526599 16526639 41 ATTAAATCAGGAGACAGAAGCCATAAAGGAAGAACTGTTGT ATTAAATCAGGAGACAGAAGCCATACAGGAAGAACTGTTGT < 41bp 1 0.209019146394701 1 0.138750940561295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTER ENSG00000165983 CDS Human protein_coding chr10:16526619 chr10:16526624 nonsynonymous SNV 0.885 0 26 hm5C_associated_SNPs_19732 0 0 0 0 0 chromatin 1 0.500231643927294 1 0.999536712145412 hm5C_site_20944 DeepMRMD:1;iRNA_m5C:0.999536712145412 20945 chrX 215934 215934 1 + G A COAD 215918 + 215898 215938 41 GGGCCGGGTTCACGGTGCACCAACATCATCGCGGGGGACTT GGGCCGGGTTCACGGTGCACCAACATCATCGCGGGGAACTT < 41bp 1 0.521086559313534 1 0.374004036188126 experiment 0.957826881372932 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:215918 chrX:215934 nonsynonymous SNV 0.128 4 37 hm5C_associated_SNPs_19735 0 0 1 0 0 Cytosol 1 0.500231614216889 1 0.999536771566223 hm5C_site_20945 DeepMRMD:1;iRNA_m5C:0.999536771566223 20946 chr14 104618660 104618660 1 + C T COAD 104618666 + 104618646 104618686 41 CTGGCCTGGTCCCCCGGGCCCAGTGTCCAGGTGTCTGTAGC CTGGCCTGGTCCCCTGGGCCCAGTGTCCAGGTGTCTGTAGC < 41bp 1 0.207385788694649 1 0.0790555477142334 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104618666 chr14:104618660 synonymous SNV . 0 15 hm5C_associated_SNPs_19736 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20946 DeepMRMD:1;iRNA_m5C:0.999536712157815 20947 chr12 51117091 51117091 1 + C A COAD 51117087 + 51117067 51117107 41 CCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATG CCTCACGGCCACGCTGCCCACTGTACGAATGATTGTTGATG < 41bp 1 0.406762893099224 1 0.160151481628418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51117087 chr12:51117091 synonymous SNV . 0 25 hm5C_associated_SNPs_19737 0 0 1 0 1 Nucleus 1 0.500231648178667 1 0.999536703642666 hm5C_site_20947 DeepMRMD:1;iRNA_m5C:0.999536703642666 20948 chr16 29810042 29810042 1 + T C COAD 29810025 + 29810005 29810045 41 TGCCGAGGGCCGGCCATGGGCCCTTTCTGTCACCATGTCTT TGCCGAGGGCCGGCCATGGGCCCTTTCTGTCACCATGCCTT < 41bp 1 0.147574446473851 1 0.0231205523014069 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29810025 chr16:29810042 nonsynonymous SNV 0.999 3 38 hm5C_associated_SNPs_19738 0 0 1 0 1 Cytosol 1 0.500231643921117 1 0.999536712157765 hm5C_site_20948 DeepMRMD:1;iRNA_m5C:0.999536712157765 20949 chr5 40979971 40979971 1 + G A COAD 40979964 + 40979944 40979984 41 CAGCTGTACTCTGCCTGCCTCAGCTGAGAAAGCTTGTGGTG CAGCTGTACTCTGCCTGCCTCAGCTGAAAAAGCTTGTGGTG < 41bp 1 0.585730773263228 1 0.856753349304199 experiment 0.828538453473544 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control C7 ENSG00000112936 CDS Human protein_coding chr5:40979964 chr5:40979971 synonymous SNV . 0 28 hm5C_associated_SNPs_19739 0 0 0 0 0 Endoplasmic reticulum 1 0.500231703649782 0.286493301391602 0.999536592700436 hm5C_site_20949 DeepMRMD:0.286493301391602;iRNA_m5C:0.999536592700436 20950 chr4 103522084 103522084 1 + C T COAD 103522101 + 103522081 103522121 41 ATTCTCAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT ATTTTCAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT < 41bp 1 0.154170978016259 1 0.37762451171875 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103522101 chr4:103522084 nonsynonymous SNV 0.966 0 4 hm5C_associated_SNPs_19740 0 0 1 0 1 Ribosome 1 0.500231643921366 1 0.999536712157267 hm5C_site_20950 DeepMRMD:1;iRNA_m5C:0.999536712157267 20951 chr16 16230342 16230342 1 + T C COAD 16230338 + 16230318 16230358 41 CTCTTCTCTCTGAACAGGACCCTGTTTTGTTTTCGGGTTCC CTCTTCTCTCTGAACAGGACCCTGCTTTGTTTTCGGGTTCC < 41bp 1 0.0276913063363746 1 0.134663552045822 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16230338 chr16:16230342 nonsynonymous SNV 0.608 3 25 hm5C_associated_SNPs_19743 0 0 0 0 1 Mitochondrion 1 0.500231643921252 1 0.999536712157497 hm5C_site_20951 DeepMRMD:1;iRNA_m5C:0.999536712157497 20952 chr12 101711340 101711340 1 + C T COAD 101711330 + 101711310 101711350 41 AAAAGGCAAAGGGATGGTGGCAGAGGAAATCGAAGAGGAAC AAAAGGCAAAGGGATGGTGGCAGAGGAAATTGAAGAGGAAC < 41bp 1 0.330214534907348 1 0.664908170700073 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711330 chr12:101711340 synonymous SNV . 0 31 hm5C_associated_SNPs_19744 0 0 1 0 1 Cytosol 1 0.500231643921092 0.670183658599854 0.999536712157815 hm5C_site_20952 DeepMRMD:0.670183658599854;iRNA_m5C:0.999536712157815 20953 chr12 101711340 101711340 1 + C T COAD 101711351 + 101711331 101711371 41 AGAGGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAG AGAGGAAATTGAAGAGGAACCTGCCGCAGGAGATGATGAAG < 41bp 1 0.359783965859502 1 0.693605959415436 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711351 chr12:101711340 synonymous SNV . 0 10 hm5C_associated_SNPs_19745 0 0 1 0 1 Cytosol 1 0.500231643921092 0.612788081169128 0.999536712157815 hm5C_site_20953 DeepMRMD:0.612788081169128;iRNA_m5C:0.999536712157815 20954 chr12 101711340 101711340 1 + C T COAD 101711354 + 101711334 101711374 41 GGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGT GGAAATTGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGT < 41bp 1 0.274217829181684 1 0.501982629299164 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711354 chr12:101711340 synonymous SNV . 0 7 hm5C_associated_SNPs_19746 0 0 1 0 1 Cytosol 1 0.500231643903507 0.996034741401672 0.999536712192985 hm5C_site_20954 DeepMRMD:0.996034741401672;iRNA_m5C:0.999536712192985 20955 chr12 101711340 101711340 1 + C T COAD 101711355 + 101711335 101711375 41 GAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTT GAAATTGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTT < 41bp 1 0.426185784574688 1 0.592441201210022 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711355 chr12:101711340 synonymous SNV . 0 6 hm5C_associated_SNPs_19747 0 0 1 0 1 Cytosol 1 0.50023164392107 0.815117597579956 0.999536712157859 hm5C_site_20955 DeepMRMD:0.815117597579956;iRNA_m5C:0.999536712157859 20956 chr1 198233281 198233281 1 + A C COAD 198233263 + 198233243 198233283 41 TTATTTTCTCAGCAACTCAACCATCCAAATGTAATAAAATA TTATTTTCTCAGCAACTCAACCATCCAAATGTAATAAACTA < 41bp 1 0.0142907209415921 1 0.137663185596466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233263 chr1:198233281 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_19749 0 0 1 0 2 Nucleus 1 0.500221106276474 1 0.999557787447052 hm5C_site_20956 DeepMRMD:1;iRNA_m5C:0.999557787447052 20957 chr1 198233281 198233281 1 + A C COAD 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAACTATTATGCATCATTCATTGAAGATAATGAACTAAA < 41bp 1 0.109682073976884 1 0.302419394254684 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233281 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_19750 0 0 1 0 2 Nucleus 1 0.500231645037621 1 0.999536709924759 hm5C_site_20957 DeepMRMD:1;iRNA_m5C:0.999536709924759 20958 chr22 38352844 38352844 1 + G A COAD 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGAGAATGCCAAAGAGGT < 41bp 1 0.477569057320976 1 0.194418340921402 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352844 nonsynonymous SNV 0.925 1 34 hm5C_associated_SNPs_19751 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20958 DeepMRMD:1;iRNA_m5C:0.999536712157815 20959 chr22 38352844 38352844 1 + G A COAD 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGAGAATGCCAAAGAGGTCAGTATTCAGCC < 41bp 1 0.587676181847692 1 0.520115494728088 experiment 0.824647636304617 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352844 nonsynonymous SNV 0.925 1 22 hm5C_associated_SNPs_19752 0 0 1 0 3 Ribosome 1 0.50023164808262 0.959769010543824 0.99953670383476 hm5C_site_20959 DeepMRMD:0.959769010543824;iRNA_m5C:0.99953670383476 20960 chr5 102343184 102343184 1 + C T COAD 102343174 + 102343154 102343194 41 TCTGCAGAGTCTTCAGGGAGCAGTCCTCTGCCAGGCCAGTT TCTGCAGAGTCTTCAGGGAGCAGTCCTCTGTCAGGCCAGTT < 41bp 1 0.12651001444726 1 0.168356508016586 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102343174 chr5:102343184 nonsynonymous SNV 0.769 3 31 hm5C_associated_SNPs_19753 0 0 1 0 0 Ribosome 1 0.500231643933652 1 0.999536712132696 hm5C_site_20960 DeepMRMD:1;iRNA_m5C:0.999536712132696 20961 chr8 107752665 107752665 1 + G A COAD 107752684 + 107752664 107752704 41 CGAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT CAAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT < 41bp 1 0.333522924229847 1 0.182835131883621 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752684 chr8:107752665 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_19754 0 0 1 1 2 chromatin 1 0.500231643921079 1 0.999536712157842 hm5C_site_20961 DeepMRMD:1;iRNA_m5C:0.999536712157842 20962 chr17 47119664 47119664 1 + G T COAD 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATCGATAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA < 41bp 1 0.109777329204083 1 0.221370816230774 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119664 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_19755 0 0 1 0 1 Ribosome 1 0.500231643921095 1 0.999536712157811 hm5C_site_20962 DeepMRMD:1;iRNA_m5C:0.999536712157811 20963 chr17 47119664 47119664 1 + G T COAD 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATCGATAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA < 41bp 1 0.332899117684689 1 0.212129563093185 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119664 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_19756 0 0 1 0 1 Ribosome 1 0.500231643919817 1 0.999536712160365 hm5C_site_20963 DeepMRMD:1;iRNA_m5C:0.999536712160365 20964 chr3 62189577 62189577 1 + G A COAD 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCACGGGGACCGATTTTCTGAAGACAGCAGA < 41bp 1 0.083514622700546 1 0.0912807881832123 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189577 nonsynonymous SNV 0.872 1 13 hm5C_associated_SNPs_19758 0 0 0 0 1 Ribosome 1 0.500231643921088 1 0.999536712157824 hm5C_site_20964 DeepMRMD:1;iRNA_m5C:0.999536712157824 20965 chr2 220349100 220349100 1 + G T COAD 220349085 + 220349065 220349105 41 GTGCCCTCAGCCGGGGGTCCCCCGGTGCTAGCCGAGAAAGC GTGCCCTCAGCCGGGGGTCCCCCGGTGCTAGCCGATAAAGC < 41bp 1 0.291074891799234 1 0.430364698171616 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220349085 chr2:220349100 nonsynonymous SNV 0.967 0 36 hm5C_associated_SNPs_19759 0 0 0 0 0 Nucleus 1 0.500231643929465 1 0.99953671214107 hm5C_site_20965 DeepMRMD:1;iRNA_m5C:0.99953671214107 20966 chr7 4002347 4002347 1 + G A COAD 4002345 + 4002325 4002365 41 CCATCTCCATCAGCAGGCTCCAGAATCCTCGATACAAAGTG CCATCTCCATCAGCAGGCTCCAAAATCCTCGATACAAAGTG < 41bp 1 0.141550849009048 1 0.234192967414856 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4002345 chr7:4002347 synonymous SNV . 0 23 hm5C_associated_SNPs_19760 0 0 1 0 1 cytosol 1 0.500229037210305 1 0.999541925579389 hm5C_site_20966 DeepMRMD:1;iRNA_m5C:0.999541925579389 20967 chr2 135883788 135883788 1 + G A COAD 135883796 + 135883776 135883816 41 CCTCATCTGACCGAAGGGATCATTGTGGATAATGATGTTTA CCTCATCTGACCAAAGGGATCATTGTGGATAATGATGTTTA < 41bp 1 0.116585997571818 1 0.0839249193668365 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883796 chr2:135883788 nonsynonymous SNV 0.915 4 13 hm5C_associated_SNPs_19761 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20967 DeepMRMD:1;iRNA_m5C:0.999536712157815 20968 chr12 13232900 13232900 1 + G A COAD 13232896 + 13232876 13232916 41 CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTAGG CCAAAATTGGCCGTGGGGAGCTGCAAAGATTTCTCTCTAGG < 41bp 1 0.66996269731816 1 0.285153120756149 experiment 0.66007460536368 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232896 chr12:13232900 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_19762 0 0 1 1 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20968 DeepMRMD:1;iRNA_m5C:0.999536712157815 20969 chr19 42855623 42855623 1 + C T COAD 42855632 + 42855612 42855652 41 TCTAGCCAGTGCGCCTGGTGCCAGTCCACCCACACCTGCTT TCTAGCCAGTGTGCCTGGTGCCAGTCCACCCACACCTGCTT < 41bp 1 0.0908721421503405 1 0.0859840214252472 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42855632 chr19:42855623 synonymous SNV . 0 12 hm5C_associated_SNPs_19763 0 0 1 0 2 Endoplasmic reticulum 1 0.500231647182739 1 0.999536705634522 hm5C_site_20969 DeepMRMD:1;iRNA_m5C:0.999536705634522 20970 chr2 224824263 224824263 1 + G A COAD 224824275 + 224824255 224824295 41 GAGAAGCCGAACTGGGATTACCATGCAGAAATACAAGCTTT GAGAAGCCAAACTGGGATTACCATGCAGAAATACAAGCTTT < 41bp 1 0.127348156968072 1 0.242820084095001 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824275 chr2:224824263 synonymous SNV . 0 9 hm5C_associated_SNPs_19764 0 0 1 0 1 Ribosome 1 0.500231643918604 1 0.999536712162792 hm5C_site_20970 DeepMRMD:1;iRNA_m5C:0.999536712162792 20971 chr6 72003252 72003252 1 + G A COAD 72003257 + 72003237 72003277 41 ACTTCAAAGATATCCGATATCAAAATGACTTGAGCAATCTT ACTTCAAAGATATCCAATATCAAAATGACTTGAGCAATCTT < 41bp 1 0.652288131873508 1 0.377761662006378 experiment 0.695423736252983 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003257 chr6:72003252 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_19765 0 0 1 0 2 exosome 1 0.500231353955828 1 0.999537292088344 hm5C_site_20971 DeepMRMD:1;iRNA_m5C:0.999537292088344 20972 chr7 149422526 149422526 1 + G A COAD 149422538 + 149422518 149422558 41 CCAGCCAGGAGACTCTAGGTCTCAGAAGCCTGAACTGCAAC CCAGCCAGAAGACTCTAGGTCTCAGAAGCCTGAACTGCAAC < 41bp 1 0.294263821457176 1 0.428112715482712 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149422538 chr7:149422526 nonsynonymous SNV 0.038 4 9 hm5C_associated_SNPs_19766 0 0 0 0 1 Cytosol 1 0.500231800146749 1 0.999536399706503 hm5C_site_20972 DeepMRMD:1;iRNA_m5C:0.999536399706503 20973 chr1 154304480 154304480 1 + A C COAD 154304485 + 154304465 154304505 41 TGGGCTGTGTTACATAGAGACAGCAGAACTTGATGGGTAAG TGGGCTGTGTTACATCGAGACAGCAGAACTTGATGGGTAAG < 41bp 1 0.628082232886653 1 0.382967114448547 experiment 0.743835534226694 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154304485 chr1:154304480 synonymous SNV . 0 16 hm5C_associated_SNPs_19767 0 0 1 0 2 chromatin 1 0.500231644052624 1 0.999536711894752 hm5C_site_20973 DeepMRMD:1;iRNA_m5C:0.999536711894752 20974 chr9 131455942 131455942 1 + C T COAD 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGACGAAACGTTCGAGTCAAATGCAGAAT < 41bp 1 0.111549179623361 1 0.0575315058231354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455942 nonsynonymous SNV 0.998 1 34 hm5C_associated_SNPs_19768 0 0 1 1 1 Ribosome 1 0.500231637562727 1 0.999536724874547 hm5C_site_20974 DeepMRMD:1;iRNA_m5C:0.999536724874547 20975 chr8 124811872 124811872 1 + G A COAD 124811871 + 124811851 124811891 41 TGTCCAAAGGTACAAGACTTCGAAAACTGCCAGATATATTT TGTCCAAAGGTACAAGACTTCAAAAACTGCCAGATATATTT < 41bp 1 0.688490233442589 1 0.475653320550919 experiment 0.623019533114823 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124811871 chr8:124811872 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_19769 0 0 1 0 1 Ribosome 1 0.500231643932184 1 0.999536712135633 hm5C_site_20975 DeepMRMD:1;iRNA_m5C:0.999536712135633 20976 chr8 145139718 145139718 1 + C T COAD 145139712 + 145139692 145139732 41 TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCT TACTTGCTCCCCGGCCTCTCCCGCTTTGTCTCCATCGGCCT < 41bp 1 0.333332738212198 1 0.105329096317291 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139712 chr8:145139718 synonymous SNV . 0 27 hm5C_associated_SNPs_19770 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_20976 DeepMRMD:1;iRNA_m5C:0.999536712157815 20977 chr12 56347543 56347543 1 + C A COAD 56347561 + 56347541 56347581 41 TTCTTGAGCTAAGGGGGACACCCTTGGCCTCCAAGCCAGCC TTATTGAGCTAAGGGGGACACCCTTGGCCTCCAAGCCAGCC < 41bp 1 0.250824776097565 1 0.0615386962890625 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56347561 chr12:56347543 nonsynonymous SNV 0.887 1 3 hm5C_associated_SNPs_19771 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20977 DeepMRMD:1;iRNA_m5C:0.999536712157815 20978 chr1 233482322 233482322 1 + G A COAD 233482335 + 233482315 233482355 41 GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA GGCCCCCAAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA < 41bp 1 0.133437851416527 1 0.0670621395111084 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482335 chr1:233482322 nonsynonymous SNV 0.960 5 8 hm5C_associated_SNPs_19772 0 0 0 0 1 unknown 1 0.500231643927525 1 0.999536712144949 hm5C_site_20978 DeepMRMD:1;iRNA_m5C:0.999536712144949 20979 chr12 58001351 58001351 1 + C T COAD 58001336 + 58001316 58001356 41 GACGCCACCCTCCTACTGCCCAGCTATGAGAAGTACGGCAC GACGCCACCCTCCTACTGCCCAGCTATGAGAAGTATGGCAC < 41bp 1 0.530663383253915 1 0.11202409863472 experiment 0.93867323349217 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DTX3 ENSG00000178498 CDS Human protein_coding chr12:58001336 chr12:58001351 synonymous SNV . 0 36 hm5C_associated_SNPs_19773 0 0 0 0 0 exosome 1 0.50023164456897 1 0.999536710862061 hm5C_site_20979 DeepMRMD:1;iRNA_m5C:0.999536710862061 20980 chr12 58001351 58001351 1 + C T COAD 58001367 + 58001347 58001387 41 AGTACGGCACCATTGTCATCCAGTACGTCTTCCCGCCCGGT AGTATGGCACCATTGTCATCCAGTACGTCTTCCCGCCCGGT < 41bp 1 0.482577920926245 1 0.491230010986328 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DTX3 ENSG00000178498 CDS Human protein_coding chr12:58001367 chr12:58001351 synonymous SNV . 0 5 hm5C_associated_SNPs_19774 0 0 0 0 0 exosome 1 0.50023164392238 1 0.999536712155241 hm5C_site_20980 DeepMRMD:1;iRNA_m5C:0.999536712155241 20981 chr5 72187658 72187658 1 + C T COAD 72187646 + 72187626 72187666 41 ATTGTAAATAGGAATATATTCAGATGCTAATGCCTCCACTG ATTGTAAATAGGAATATATTCAGATGCTAATGTCTCCACTG < 41bp 1 0.596292159051243 1 0.801020920276642 experiment 0.807415681897515 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187646 chr5:72187658 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_19776 0 0 1 0 2 Cytosol 1 0.500231643987886 0.397958159446716 0.999536712024228 hm5C_site_20981 DeepMRMD:0.397958159446716;iRNA_m5C:0.999536712024228 20982 chr5 72187658 72187658 1 + C T COAD 72187652 + 72187632 72187672 41 AATAGGAATATATTCAGATGCTAATGCCTCCACTGATCCAG AATAGGAATATATTCAGATGCTAATGTCTCCACTGATCCAG < 41bp 1 0.273068046470681 1 0.0739661455154419 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187652 chr5:72187658 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_19777 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20982 DeepMRMD:1;iRNA_m5C:0.999536712157815 20983 chr5 72187658 72187658 1 + C T COAD 72187659 + 72187639 72187679 41 ATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGA ATATATTCAGATGCTAATGTCTCCACTGATCCAGAAATGGA < 41bp 1 0.494494750514969 1 0.918358206748962 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187659 chr5:72187658 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_19778 0 0 1 0 2 Cytosol 1 0.500236489628068 0.163283586502076 0.999527020743864 hm5C_site_20983 DeepMRMD:0.163283586502076;iRNA_m5C:0.999527020743864 20984 chr5 72187658 72187658 1 + C T COAD 72187661 + 72187641 72187681 41 ATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAAC ATATTCAGATGCTAATGTCTCCACTGATCCAGAAATGGAAC < 41bp 1 0.122732896035422 1 0.107120424509048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187661 chr5:72187658 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_19779 0 0 1 0 2 Cytosol 1 0.500232782420048 1 0.999534435159904 hm5C_site_20984 DeepMRMD:1;iRNA_m5C:0.999534435159904 20985 chr5 72187658 72187658 1 + C T COAD 72187662 + 72187642 72187682 41 TATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACA TATTCAGATGCTAATGTCTCCACTGATCCAGAAATGGAACA < 41bp 1 0.182444494455049 1 0.270195811986923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187662 chr5:72187658 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_19780 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_20985 DeepMRMD:1;iRNA_m5C:0.999536712157815 20986 chr5 72187658 72187658 1 + C T COAD 72187664 + 72187644 72187684 41 TTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAACATG TTCAGATGCTAATGTCTCCACTGATCCAGAAATGGAACATG < 41bp 1 0.206568259754855 1 0.0753190219402313 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187664 chr5:72187658 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_19781 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_20986 DeepMRMD:1;iRNA_m5C:0.999536712157815 20987 chr5 72187658 72187658 1 + C T COAD 72187669 + 72187649 72187689 41 ATGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAA ATGCTAATGTCTCCACTGATCCAGAAATGGAACATGTTAAA < 41bp 1 0.489985234038513 1 0.820715665817261 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187669 chr5:72187658 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_19782 0 0 1 0 2 Cytosol 1 0.500232152895907 0.358568668365478 0.999535694208185 hm5C_site_20987 DeepMRMD:0.358568668365478;iRNA_m5C:0.999535694208185 20988 chr5 72187658 72187658 1 + C T COAD 72187670 + 72187650 72187690 41 TGCTAATGCCTCCACTGATCCAGAAATGGAACATGTTAAAG TGCTAATGTCTCCACTGATCCAGAAATGGAACATGTTAAAG < 41bp 1 0.620455032264837 1 0.534485697746277 experiment 0.759089935470326 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187670 chr5:72187658 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_19783 0 0 1 0 2 Cytosol 1 0.500231643921093 0.931028604507446 0.999536712157814 hm5C_site_20988 DeepMRMD:0.931028604507446;iRNA_m5C:0.999536712157814 20989 chr2 191523976 191523976 1 + C A COAD 191523972 + 191523952 191523992 41 TATTACAAAAAGCCAATCTACTTTCTTATTTTGATGCCTTT TATTACAAAAAGCCAATCTACTTTATTATTTTGATGCCTTT < 41bp 1 0.311698105246656 1 0.128427714109421 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAB1 ENSG00000138386 CDS Human protein_coding chr2:191523972 chr2:191523976 nonsynonymous SNV 0.884 2 25 hm5C_associated_SNPs_19784 0 0 1 0 0 Cytosol 1 0.500231614207574 1 0.999536771584852 hm5C_site_20989 DeepMRMD:1;iRNA_m5C:0.999536771584852 20990 chr11 95561132 95561132 1 + T G COAD 95561126 + 95561106 95561146 41 GTAACACCTCCCTCCTCCAACGGTATTAATGAGGAGTTGTC GTAACACCTCCCTCCTCCAACGGTATGAATGAGGAGTTGTC < 41bp 1 0.6078590605732 1 0.310861706733704 experiment 0.7842818788536 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95561126 chr11:95561132 nonsynonymous SNV 0.105 0 27 hm5C_associated_SNPs_19785 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_20990 DeepMRMD:1;iRNA_m5C:0.999536712157816 20991 chr2 86968148 86968148 1 + G T COAD 86968142 + 86968122 86968162 41 TTCAAAAATTGGCCTCCGACCACAAAGACATCCACAGCAGT TTCAAAAATTGGCCTCCGACCACAAATACATCCACAGCAGT < 41bp 1 0.427325635936648 1 0.714226305484772 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RMND5A ENSG00000153561 CDS Human protein_coding chr2:86968142 chr2:86968148 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_19786 0 0 0 0 2 Ribosome 1 0.500231645003768 0.571547389030456 0.999536709992464 hm5C_site_20991 DeepMRMD:0.571547389030456;iRNA_m5C:0.999536709992464 20992 chr8 143782013 143782013 1 + C T COAD 143782018 + 143781998 143782038 41 ACGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC ACGCCAACCTGACTGTGAGACAACGAGATCCAGAGGACTCC < 41bp 1 0.686675769724399 1 0.0853424966335297 experiment 0.626648460551202 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143782018 chr8:143782013 nonsynonymous SNV 0.125 0 16 hm5C_associated_SNPs_19787 0 0 1 0 1 nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_20992 DeepMRMD:1;iRNA_m5C:0.999536712157814 20993 chr17 16343404 16343404 1 + A C COAD 16343415 + 16343395 16343435 41 CTGACGAAGACTACTCCTGTCTGATTGCAGTCAAGTCTTCA CTGACGAAGCCTACTCCTGTCTGATTGCAGTCAAGTCTTCA < 41bp 1 0.229408481149283 1 0.0399780571460724 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD49A ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16343415 chr17:16343404 . . 0 10 hm5C_associated_SNPs_19788 0 0 1 0 0 unknown 1 0.500151627668705 1 0.999696744662591 hm5C_site_20993 DeepMRMD:1;iRNA_m5C:0.999696744662591 20994 chr12 107237706 107237706 1 + G A COAD 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCGAAACATCCAAAAATTTCTCAAAGA < 41bp 1 0.128671473970378 1 0.221647083759308 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237706 nonsynonymous SNV 0.993 4 26 hm5C_associated_SNPs_19789 0 0 0 1 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_20994 DeepMRMD:1;iRNA_m5C:0.999536712157815 20995 chr17 7812622 7812622 1 + G A COAD 7812636 + 7812616 7812656 41 GCTGGCGGGGAACAAGCCGGCCAACGCCGTCCTGCACAAGG GCTGGCAGGGAACAAGCCGGCCAACGCCGTCCTGCACAAGG < 41bp 1 0.101877328572152 1 0.494409084320068 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7812636 chr17:7812622 synonymous SNV . 0 7 hm5C_associated_SNPs_19790 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_20995 DeepMRMD:1;iRNA_m5C:0.999536712157815 20996 chr16 1394258 1394258 1 + C A COAD 1394270 + 1394250 1394290 41 TTCCAACCCTCCTTTGAGATCTGCCCCTTCGAGTCGGAGCT TTCCAACCATCCTTTGAGATCTGCCCCTTCGAGTCGGAGCT < 41bp 1 0.175203013635263 1 0.155116826295853 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394270 chr16:1394258 synonymous SNV . 0 9 hm5C_associated_SNPs_19791 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_20996 DeepMRMD:1;iRNA_m5C:0.999536712157815 20997 chr18 13029787 13029787 1 + G A COAD 13029800 + 13029780 13029820 41 TAAAACAGGGGGCAGAGTGTCCTCACCAAAATAAGACAGTT TAAAACAAGGGGCAGAGTGTCCTCACCAAAATAAGACAGTT < 41bp 1 0.137378736322622 1 0.163828194141388 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13029800 chr18:13029787 synonymous SNV . 0 8 hm5C_associated_SNPs_19792 0 0 1 0 0 Nucleus 1 0.500231643921095 1 0.99953671215781 hm5C_site_20997 DeepMRMD:1;iRNA_m5C:0.99953671215781 20998 chr1 109772139 109772139 1 + A G COAD 109772124 + 109772104 109772144 41 GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAGCCTCC < 41bp 1 0.622503036173608 1 0.847208321094513 experiment 0.754993927652783 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772124 chr1:109772139 nonsynonymous SNV 0.996 0 36 hm5C_associated_SNPs_19793 0 0 1 0 1 Ribosome 1 0.500231643921395 0.305583357810974 0.99953671215721 hm5C_site_20998 DeepMRMD:0.305583357810974;iRNA_m5C:0.99953671215721 20999 chr1 109772139 109772139 1 + A G COAD 109772129 + 109772109 109772149 41 GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGAG GGATAAAGTTGGAAGCAGAGCGGTTTGAGAGCCTCCGAGAG < 41bp 1 0.549610953455488 1 0.304604649543762 experiment 0.900778093089025 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772129 chr1:109772139 nonsynonymous SNV 0.996 0 31 hm5C_associated_SNPs_19794 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_20999 DeepMRMD:1;iRNA_m5C:0.999536712157815 21000 chr9 91083295 91083295 1 + C T COAD 91083287 + 91083267 91083307 41 TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCGATG TTTTTTTTTTTAATCCCCAGCGACATCTTGAATCAGCGATG < 41bp 1 0.333441667927077 1 0.441511482000351 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91083287 chr9:91083295 stopgain 0.612 0 29 hm5C_associated_SNPs_19795 0 0 1 0 1 Cytosol 1 0.500231644938611 1 0.999536710122778 hm5C_site_21000 DeepMRMD:1;iRNA_m5C:0.999536710122778 21001 chr8 104343622 104343622 1 + T C COAD 104343630 + 104343610 104343650 41 AGAGCAACAATTTGCAGGTCCCCAGTTCTTCAGAACCAAGC AGAGCAACAATTCGCAGGTCCCCAGTTCTTCAGAACCAAGC < 41bp 1 0.243253250329792 1 0.0627421140670776 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104343630 chr8:104343622 nonsynonymous SNV 0.728 0 13 hm5C_associated_SNPs_19796 0 0 1 0 1 Ribosome 1 0.500231647934825 1 0.99953670413035 hm5C_site_21001 DeepMRMD:1;iRNA_m5C:0.99953670413035 21002 chr15 45003782 45003782 1 + T C COAD 45003787 + 45003767 45003807 41 CTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATC CTGTGCTCGCGCTACCCTCTCTTTCTGGCCTGGAGGCTATC < 41bp 1 0.121377885520226 1 0.0632613897323608 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B2M ENSG00000166710 CDS Human protein_coding chr15:45003787 chr15:45003782 nonsynonymous SNV 0.001 1 16 hm5C_associated_SNPs_19798 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21002 DeepMRMD:1;iRNA_m5C:0.999536712157815 21003 chr1 53420454 53420454 1 + G C COAD 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGACTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.367534661542813 1 0.183730065822601 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420454 nonsynonymous SNV 0.822 1 10 hm5C_associated_SNPs_19799 0 0 1 0 2 Ribosome 1 0.500231643921112 1 0.999536712157775 hm5C_site_21003 DeepMRMD:1;iRNA_m5C:0.999536712157775 21004 chr7 65610471 65610471 1 + C T COAD 65610481 + 65610461 65610501 41 CCTGTGACTGCTGTGGAGATCCAGCTGGTGAGTGAAGGGCG CCTGTGACTGTTGTGGAGATCCAGCTGGTGAGTGAAGGGCG < 41bp 1 0.576697146955096 1 0.432409405708313 experiment 0.846605706089808 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CRCP ENSG00000241258;ENSG00000249319 CDS Human other chr7:65610481 chr7:65610471 nonsynonymous SNV 0.972 3 11 hm5C_associated_SNPs_19800 0 0 1 3 2 Ribosome 1 0.500231523071251 1 0.999536953857499 hm5C_site_21004 DeepMRMD:1;iRNA_m5C:0.999536953857499 21005 chr7 101960924 101960924 1 + G A COAD 101960919 + 101960899 101960939 41 CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTCGCA CCCACTGGAGTCAGGGGGCTCGGCCAACATCACCCTTCGCA < 41bp 1 0.408875814088751 1 0.679640889167786 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101960919 chr7:101960924 nonsynonymous SNV 0.291 2 26 hm5C_associated_SNPs_19801 0 0 0 0 1 nucleoplasm 1 0.500231643921092 0.640718221664428 0.999536712157815 hm5C_site_21005 DeepMRMD:0.640718221664428;iRNA_m5C:0.999536712157815 21006 chr9 131298738 131298738 1 + G A COAD 131298744 + 131298724 131298764 41 TATCATCCAGCTCCGGTGGCCATATGGAAACCGACAGGAGG TATCATCCAGCTCCAGTGGCCATATGGAAACCGACAGGAGG < 41bp 1 0.0964740396263618 1 0.151069939136505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLE1 ENSG00000119392 CDS Human protein_coding chr9:131298744 chr9:131298738 nonsynonymous SNV 0.995 0 15 hm5C_associated_SNPs_19802 0 0 0 0 1 Cytosol 1 0.500231643920967 1 0.999536712158066 hm5C_site_21006 DeepMRMD:1;iRNA_m5C:0.999536712158066 21007 chr1 46977843 46977843 1 + G A COAD 46977851 + 46977831 46977871 41 CAGCACATGGCGGCCACCAACAACCTGGTGCACTACTCGTC CAGCACATGGCGACCACCAACAACCTGGTGCACTACTCGTC < 41bp 1 0.409186456888234 1 0.154390305280685 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46977851 chr1:46977843 nonsynonymous SNV 0.999 5 13 hm5C_associated_SNPs_19803 0 0 0 0 0 nucleolus 1 0.500231064761608 1 0.999537870476785 hm5C_site_21007 DeepMRMD:1;iRNA_m5C:0.999537870476785 21008 chr3 119133703 119133703 1 + C T COAD 119133695 + 119133675 119133715 41 CTCGAGGTTCCCTCCTCCAGCAGCTGTGCTAATCTTGAAAC CTCGAGGTTCCCTCCTCCAGCAGCTGTGTTAATCTTGAAAC < 41bp 1 0.308307766057753 1 0.200634658336639 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119133695 chr3:119133703 nonsynonymous SNV 0.985 0 29 hm5C_associated_SNPs_19804 0 0 0 0 0 cytosol 1 0.500231643921068 1 0.999536712157864 hm5C_site_21008 DeepMRMD:1;iRNA_m5C:0.999536712157864 21009 chr9 135942520 135942520 1 + G A COAD 135942509 + 135942489 135942529 41 GGGTTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTC GGGTTGCCCTGTGGGTGATGCCGCCAGGATGACCCAGTGTC < 41bp 1 0.1893876561312 1 0.124866485595703 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942509 chr9:135942520 nonsynonymous SNV 0.956 3 32 hm5C_associated_SNPs_19805 0 0 1 0 1 exosome 1 0.500231643915474 1 0.999536712169052 hm5C_site_21009 DeepMRMD:1;iRNA_m5C:0.999536712169052 21010 chr9 135942520 135942520 1 + G A COAD 135942512 + 135942492 135942532 41 TTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTCTGA TTGCCCTGTGGGTGATGCCGCCAGGATGACCCAGTGTCTGA < 41bp 1 0.437589703619267 1 0.413534045219421 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942512 chr9:135942520 nonsynonymous SNV 0.956 3 29 hm5C_associated_SNPs_19806 0 0 1 0 1 exosome 1 0.500230558434936 1 0.999538883130128 hm5C_site_21010 DeepMRMD:1;iRNA_m5C:0.999538883130128 21011 chr9 135942520 135942520 1 + G A COAD 135942521 + 135942501 135942541 41 GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTG GGGTGATGCCGCCAGGATGACCCAGTGTCTGAAGGTTACTG < 41bp 1 0.315074595520656 1 0.0358794331550598 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942521 chr9:135942520 nonsynonymous SNV 0.956 3 20 hm5C_associated_SNPs_19807 0 0 1 0 1 exosome 1 0.500231624300132 1 0.999536751399736 hm5C_site_21011 DeepMRMD:1;iRNA_m5C:0.999536751399736 21012 chr9 135942520 135942520 1 + G A COAD 135942522 + 135942502 135942542 41 GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGA GGTGATGCCGCCAGGATGACCCAGTGTCTGAAGGTTACTGA < 41bp 1 0.4812011365173 1 0.391193956136703 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942522 chr9:135942520 nonsynonymous SNV 0.956 3 19 hm5C_associated_SNPs_19808 0 0 1 0 1 exosome 1 0.500231649333664 1 0.999536701332671 hm5C_site_21012 DeepMRMD:1;iRNA_m5C:0.999536701332671 21013 chr9 135942520 135942520 1 + G A COAD 135942523 + 135942503 135942543 41 GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGAT GTGATGCCGCCAGGATGACCCAGTGTCTGAAGGTTACTGAT < 41bp 1 0.434595146523855 1 0.616484403610229 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942523 chr9:135942520 nonsynonymous SNV 0.956 3 18 hm5C_associated_SNPs_19809 0 0 1 0 1 exosome 1 0.50023164391171 0.767031192779542 0.999536712176581 hm5C_site_21013 DeepMRMD:0.767031192779542;iRNA_m5C:0.999536712176581 21014 chr9 135942520 135942520 1 + G A COAD 135942539 + 135942519 135942559 41 GGCCCAGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGC GACCCAGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGC < 41bp 1 0.564906128315826 1 0.0393069982528687 experiment 0.870187743368348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942539 chr9:135942520 nonsynonymous SNV 0.956 3 2 hm5C_associated_SNPs_19810 0 0 1 0 1 exosome 1 0.50023164392175 1 0.9995367121565 hm5C_site_21014 DeepMRMD:1;iRNA_m5C:0.9995367121565 21015 chr10 72324246 72324246 1 + C T COAD 72324236 + 72324216 72324256 41 TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT TACCTCCACCTGGAGAAGGCCGACTCCTGGTAGAGGCCCTT < 41bp 1 0.143416046023176 1 0.461002051830292 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72324236 chr10:72324246 stopgain 0.990 1 31 hm5C_associated_SNPs_19811 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21015 DeepMRMD:1;iRNA_m5C:0.999536712157815 21016 chr5 72201211 72201211 1 + C T COAD 72201196 + 72201176 72201216 41 GTTTCTCTGACCAGTTTCCTCTTCCCTTAAAAGAGCGTCTT GTTTCTCTGACCAGTTTCCTCTTCCCTTAAAAGAGTGTCTT < 41bp 1 0.170521193017412 1 0.41856837272644 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72201196 chr5:72201211 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_19812 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21016 DeepMRMD:1;iRNA_m5C:0.999536712157815 21017 chrX 53223831 53223831 1 + T C COAD 53223826 - 53223806 53223846 41 GCCCAGTCCACTGGCATCATCGAGCACGGCCTCCTCTACAA GCCCAGTCCACTGGCGTCATCGAGCACGGCCTCCTCTACAA < 41bp 1 0.611709167607299 1 0.920989274978638 experiment 0.776581664785402 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM5C ENSG00000126012 CDS Human protein_coding chrX:53223826 chrX:53223831 synonymous SNV . 0 16 hm5C_associated_SNPs_19813 0 0 1 0 1 Nucleus 1 0.500232167958857 0.158021450042724 0.999535664082285 hm5C_site_21017 DeepMRMD:0.158021450042724;iRNA_m5C:0.999535664082285 21018 chr19 40704317 40704317 1 + G A COAD 40704298 + 40704278 40704318 41 ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTCGC ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTCAC < 41bp 1 0.149869916039624 1 0.0874300897121429 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40704298 chr19:40704317 nonsynonymous SNV 0.999 0 40 hm5C_associated_SNPs_19814 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_21018 DeepMRMD:1;iRNA_m5C:0.999536712157815 21019 chr7 44741172 44741172 1 + C T COAD 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GTGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC < 41bp 1 0.199445253518432 1 0.707032561302185 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741172 nonsynonymous SNV 0.997 5 2 hm5C_associated_SNPs_19815 0 0 1 0 2 Nucleus 1 0.50023153015047 0.58593487739563 0.99953693969906 hm5C_site_21019 DeepMRMD:0.58593487739563;iRNA_m5C:0.99953693969906 21020 chr9 116971982 116971982 1 + G A COAD 116971985 + 116971965 116972005 41 GGCTCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAA GGCTCCCAGGGCTCTTCAGCCTGCCAGGGTCTGATGGAGAA < 41bp 1 0.165048248518803 1 0.345970690250397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971985 chr9:116971982 nonsynonymous SNV 0.989 4 18 hm5C_associated_SNPs_19816 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21020 DeepMRMD:1;iRNA_m5C:0.999536712157815 21021 chr9 116971982 116971982 1 + G A COAD 116971988 + 116971968 116972008 41 TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGA TCCCAGGGCTCTTCAGCCTGCCAGGGTCTGATGGAGAACGA < 41bp 1 0.149253872567295 1 0.773936092853546 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971988 chr9:116971982 nonsynonymous SNV 0.989 4 15 hm5C_associated_SNPs_19817 0 0 1 0 2 Nucleus 1 0.50023164386765 0.452127814292908 0.9995367122647 hm5C_site_21021 DeepMRMD:0.452127814292908;iRNA_m5C:0.9995367122647 21022 chr9 116971982 116971982 1 + G A COAD 116971989 + 116971969 116972009 41 CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGAG CCCAGGGCTCTTCAGCCTGCCAGGGTCTGATGGAGAACGAG < 41bp 1 0.281388220789576 1 0.679240465164185 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971989 chr9:116971982 nonsynonymous SNV 0.989 4 14 hm5C_associated_SNPs_19818 0 0 1 0 2 Nucleus 1 0.500231643921116 0.64151906967163 0.999536712157769 hm5C_site_21022 DeepMRMD:0.64151906967163;iRNA_m5C:0.999536712157769 21023 chr17 41345565 41345565 1 + A G COAD 41345576 + 41345556 41345596 41 TATCATAGTAGATCCTTTCCCCTCCGAAGAGAGCCCTGATA TATCATAGTGGATCCTTTCCCCTCCGAAGAGAGCCCTGATA < 41bp 1 0.167109578690087 1 0.385305523872375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41345576 chr17:41345565 synonymous SNV . 0 10 hm5C_associated_SNPs_19819 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21023 DeepMRMD:1;iRNA_m5C:0.999536712157815 21024 chr19 14512321 14512321 1 + C A COAD 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAAGATATCATGAGGATCATGGCCAAGAGCCTGCCTAA < 41bp 1 0.527825590664819 1 0.103241831064224 experiment 0.944348818670363 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512321 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_19820 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21024 DeepMRMD:1;iRNA_m5C:0.999536712157815 21025 chrX 56592162 56592162 1 + T C COAD 56592147 + 56592127 56592167 41 AGGAGGCGACATCAATGCAGCCATTGAAAGGCTGCTGGGCT AGGAGGCGACATCAATGCAGCCATTGAAAGGCTGCCGGGCT < 41bp 1 0.0714868442804233 1 0.163802415132523 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56592147 chrX:56592162 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_19821 0 0 1 0 0 nucleus 1 0.500231643927481 1 0.999536712145038 hm5C_site_21025 DeepMRMD:1;iRNA_m5C:0.999536712145038 21026 chr1 6681491 6681491 1 + G A COAD 6681488 + 6681468 6681508 41 CAGATGACGATTCCTGGGACCTCGTGACCTGCTTCTGCATG CAGATGACGATTCCTGGGACCTCATGACCTGCTTCTGCATG < 41bp 1 0.206064383879523 1 0.00625073909759521 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681488 chr1:6681491 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_19822 0 0 1 0 1 cytosol 1 0.500231644164747 1 0.999536711670507 hm5C_site_21026 DeepMRMD:1;iRNA_m5C:0.999536711670507 21027 chr14 96998735 96998735 1 + A T COAD 96998728 + 96998708 96998748 41 CATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT CATTGACAACTTCAGGTTAACTCTGAGTGCTATCAAACTAT < 41bp 1 0.505166377863486 1 0.0705487728118896 experiment 0.989667244273027 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96998728 chr14:96998735 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_19823 0 0 1 0 2 Ribosome 1 0.500231639332868 1 0.999536721334263 hm5C_site_21027 DeepMRMD:1;iRNA_m5C:0.999536721334263 21028 chr9 20990241 20990241 1 + G A COAD 20990239 + 20990219 20990259 41 CATGGCATCAGGAGAATGGCCCGGCTGGGCCAGTACCAAGC CATGGCATCAGGAGAATGGCCCAGCTGGGCCAGTACCAAGC < 41bp 1 0.191450129847875 1 0.439887017011642 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990239 chr9:20990241 synonymous SNV . 0 23 hm5C_associated_SNPs_19825 0 0 1 0 0 Ribosome 1 0.500231643921152 1 0.999536712157696 hm5C_site_21028 DeepMRMD:1;iRNA_m5C:0.999536712157696 21029 chr9 20990241 20990241 1 + G A COAD 20990248 + 20990228 20990268 41 AGGAGAATGGCCCGGCTGGGCCAGTACCAAGCTTCCTTGGC AGGAGAATGGCCCAGCTGGGCCAGTACCAAGCTTCCTTGGC < 41bp 1 0.175157773739094 1 0.0683084428310394 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990248 chr9:20990241 synonymous SNV . 0 14 hm5C_associated_SNPs_19826 0 0 1 0 0 Ribosome 1 0.50023268962727 1 0.999534620745461 hm5C_site_21029 DeepMRMD:1;iRNA_m5C:0.999534620745461 21030 chr9 20990241 20990241 1 + G A COAD 20990249 + 20990229 20990269 41 GGAGAATGGCCCGGCTGGGCCAGTACCAAGCTTCCTTGGCA GGAGAATGGCCCAGCTGGGCCAGTACCAAGCTTCCTTGGCA < 41bp 1 0.357757320425405 1 0.0852702856063843 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990249 chr9:20990241 synonymous SNV . 0 13 hm5C_associated_SNPs_19827 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21030 DeepMRMD:1;iRNA_m5C:0.999536712157815 21031 chr1 171527219 171527219 1 + A G COAD 171527220 + 171527200 171527240 41 ACAGTCACATGGCACTCTGACAGCTGAATTATGGGATAACA ACAGTCACATGGCACTCTGGCAGCTGAATTATGGGATAACA < 41bp 1 0.269258789972442 1 0.334479421377182 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171527220 chr1:171527219 nonsynonymous SNV 0.989 0 20 hm5C_associated_SNPs_19828 0 0 1 0 1 Cytosol 1 0.500231643919437 1 0.999536712161125 hm5C_site_21031 DeepMRMD:1;iRNA_m5C:0.999536712161125 21032 chr11 73022579 73022579 1 + T C COAD 73022597 + 73022577 73022617 41 CATTTATGCCTATTGTGGTGCCTGAGCCACCAACTTCTGTT CACTTATGCCTATTGTGGTGCCTGAGCCACCAACTTCTGTT < 41bp 1 0.04579638836928 1 0.0191681087017059 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73022597 chr11:73022579 nonsynonymous SNV 0.398 4 3 hm5C_associated_SNPs_19829 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21032 DeepMRMD:1;iRNA_m5C:0.999536712157815 21033 chr12 112321467 112321467 1 + G A COAD 112321465 + 112321445 112321485 41 TTTTACTCCAAACACCACAGCCGGACTATCCCAAAGGATAT TTTTACTCCAAACACCACAGCCAGACTATCCCAAAGGATAT < 41bp 1 0.254942832978757 1 0.110167950391769 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321465 chr12:112321467 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_19830 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_21033 DeepMRMD:1;iRNA_m5C:0.999536712157815 21034 chr12 112321467 112321467 1 + G A COAD 112321470 + 112321450 112321490 41 CTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAA CTCCAAACACCACAGCCAGACTATCCCAAAGGATATGCGAA < 41bp 1 0.0560072657331333 1 0.177148729562759 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321470 chr12:112321467 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_19831 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_21034 DeepMRMD:1;iRNA_m5C:0.999536712157815 21035 chr12 132326262 132326262 1 + G A COAD 132326257 + 132326237 132326277 41 GTGGCCGCTGCACACTCCATCATGCGGCCGTACTACCAGGG GTGGCCGCTGCACACTCCATCATGCAGCCGTACTACCAGGG < 41bp 1 0.198162748866457 1 0.570099771022797 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132326257 chr12:132326262 nonsynonymous SNV 0.270 0 26 hm5C_associated_SNPs_19833 0 0 0 0 2 Cytosol 1 0.500231643921092 0.859800457954406 0.999536712157816 hm5C_site_21035 DeepMRMD:0.859800457954406;iRNA_m5C:0.999536712157816 21036 chr1 39888087 39888087 1 + G T COAD 39888071 + 39888051 39888091 41 TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGC TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTTCAGC < 41bp 1 0.0283162211182888 1 0.192198157310486 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39888071 chr1:39888087 nonsynonymous SNV 0.999 3 37 hm5C_associated_SNPs_19834 0 0 1 0 1 Endoplasmic reticulum 1 0.500246893707565 1 0.999506212584869 hm5C_site_21036 DeepMRMD:1;iRNA_m5C:0.999506212584869 21037 chr11 71939506 71939506 1 + C T COAD 71939492 + 71939472 71939512 41 TGTGTGCGCCCTGCTTCTTCCTGTAGAGGGTGAGCGAGAGC TGTGTGCGCCCTGCTTCTTCCTGTAGAGGGTGAGTGAGAGC < 41bp 1 0.628330547759138 1 0.705841600894928 experiment 0.743338904481723 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71939492 chr11:71939506 stopgain 0.873 1 35 hm5C_associated_SNPs_19835 0 0 1 0 1 Cytosol 1 0.500231648180775 0.588316798210144 0.99953670363845 hm5C_site_21037 DeepMRMD:0.588316798210144;iRNA_m5C:0.99953670363845 21038 chrX 48925467 48925467 1 + C G COAD 48925472 + 48925452 48925492 41 ACTCGGGACTGGCTGCGGGGCCCCAGCGCCGGCCTGTGCTC ACTCGGGACTGGCTGGGGGGCCCCAGCGCCGGCCTGTGCTC < 41bp 1 0.579451273429232 1 0.542000830173492 experiment 0.841097453141536 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925472 chrX:48925467 nonsynonymous SNV 0.839 0 16 hm5C_associated_SNPs_19836 0 0 0 0 0 cytosol 1 0.500232148553138 0.915998339653016 0.999535702893725 hm5C_site_21038 DeepMRMD:0.915998339653016;iRNA_m5C:0.999535702893725 21039 chrX 48925467 48925467 1 + C G COAD 48925473 + 48925453 48925493 41 CTCGGGACTGGCTGCGGGGCCCCAGCGCCGGCCTGTGCTCC CTCGGGACTGGCTGGGGGGCCCCAGCGCCGGCCTGTGCTCC < 41bp 1 0.246081702457252 1 0.57560920715332 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925473 chrX:48925467 nonsynonymous SNV 0.839 0 15 hm5C_associated_SNPs_19837 0 0 0 0 0 cytosol 1 0.500231643921095 0.84878158569336 0.99953671215781 hm5C_site_21039 DeepMRMD:0.84878158569336;iRNA_m5C:0.99953671215781 21040 chrX 48925467 48925467 1 + C G COAD 48925474 + 48925454 48925494 41 TCGGGACTGGCTGCGGGGCCCCAGCGCCGGCCTGTGCTCCC TCGGGACTGGCTGGGGGGCCCCAGCGCCGGCCTGTGCTCCC < 41bp 1 0.346159293488571 1 0.519750952720642 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925474 chrX:48925467 nonsynonymous SNV 0.839 0 14 hm5C_associated_SNPs_19838 0 0 0 0 0 cytosol 1 0.500231653196929 0.960498094558716 0.999536693606141 hm5C_site_21040 DeepMRMD:0.960498094558716;iRNA_m5C:0.999536693606141 21041 chr16 2814598 2814598 1 + G T COAD 2814601 + 2814581 2814621 41 TTAAAGAAGATTTGAATGGACCGTTTCTTAATCAGCTGGAA TTAAAGAAGATTTGAATTGACCGTTTCTTAATCAGCTGGAA < 41bp 1 0.0440448559897941 1 0.0380530059337616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2814601 chr16:2814598 stopgain 0.988 0 18 hm5C_associated_SNPs_19840 0 0 1 0 0 Nucleus 1 0.50023164392146 1 0.999536712157079 hm5C_site_21041 DeepMRMD:1;iRNA_m5C:0.999536712157079 21042 chr16 2814598 2814598 1 + G T COAD 2814613 + 2814593 2814633 41 TGAATGGACCGTTTCTTAATCAGCTGGAAACAGATCCATCT TGAATTGACCGTTTCTTAATCAGCTGGAAACAGATCCATCT < 41bp 1 0.269570732598262 1 0.819846510887146 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2814613 chr16:2814598 stopgain 0.988 0 6 hm5C_associated_SNPs_19841 0 0 1 0 0 Nucleus 1 0.500231643921095 0.360306978225708 0.999536712157809 hm5C_site_21042 DeepMRMD:0.360306978225708;iRNA_m5C:0.999536712157809 21043 chr1 145663167 145663167 1 + C T COAD 145663168 + 145663148 145663188 41 GTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTTT GTCTTTACTAGCTTTGGGGTCATTTGGATCACACGATGTTT < 41bp 1 0.0313023617947198 1 0.0487439036369324 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF115 ENSG00000121848 CDS Human other chr1:145663168 chr1:145663167 synonymous SNV . 0 20 hm5C_associated_SNPs_19842 0 0 1 0 1 Nucleus 1 0.500231643922278 1 0.999536712155444 hm5C_site_21043 DeepMRMD:1;iRNA_m5C:0.999536712155444 21044 chr10 75830535 75830535 1 + T C COAD 75830552 + 75830532 75830572 41 TCCTCTCTGGAACATCAGACCTGCTCCTTACCTTCGATGAG TCCCCTCTGGAACATCAGACCTGCTCCTTACCTTCGATGAG < 41bp 1 0.329063844300994 1 0.0345292985439301 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75830552 chr10:75830535 nonsynonymous SNV 0.996 4 4 hm5C_associated_SNPs_19845 0 0 1 0 1 Nucleus 1 0.500231643911391 1 0.999536712177218 hm5C_site_21044 DeepMRMD:1;iRNA_m5C:0.999536712177218 21045 chr19 45975931 45975931 1 + C T COAD 45975941 + 45975921 45975961 41 AGATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCG AGATCCCCTATGAAGAGGGGCCCGGGCCGGGCCCGCTGGCG < 41bp 1 0.421687963725743 1 0.31423231959343 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975941 chr19:45975931 synonymous SNV . 0 11 hm5C_associated_SNPs_19846 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21045 DeepMRMD:1;iRNA_m5C:0.999536712157815 21046 chr19 45975931 45975931 1 + C T COAD 45975942 + 45975922 45975962 41 GATCCCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGG GATCCCCTATGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGG < 41bp 1 0.647935696817135 1 0.518009185791016 experiment 0.704128606365731 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975942 chr19:45975931 synonymous SNV . 0 10 hm5C_associated_SNPs_19847 0 0 0 0 1 Cytosol 1 0.500231643921092 0.963981628417968 0.999536712157815 hm5C_site_21046 DeepMRMD:0.963981628417968;iRNA_m5C:0.999536712157815 21047 chr1 109803848 109803848 1 + C T COAD 109803866 + 109803846 109803886 41 CGCGGCCTGCGCCAGCGTTTCCACTTCACCCTGGCCCTCTC CGTGGCCTGCGCCAGCGTTTCCACTTCACCCTGGCCCTCTC < 41bp 1 0.175472475391602 1 0.33540678024292 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109803866 chr1:109803848 synonymous SNV . 0 3 hm5C_associated_SNPs_19849 0 0 1 0 1 Endoplasmic reticulum 1 0.500235782735899 1 0.999528434528202 hm5C_site_21047 DeepMRMD:1;iRNA_m5C:0.999528434528202 21048 chr12 132400513 132400513 1 + T C COAD 132400500 + 132400480 132400520 41 TGCCGCCTGCACAGCGCCCCCAACCTGTCTGACTTGCACGT TGCCGCCTGCACAGCGCCCCCAACCTGTCTGACCTGCACGT < 41bp 1 0.221488851074296 1 0.113116055727005 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ULK1 ENSG00000177169 CDS Human protein_coding chr12:132400500 chr12:132400513 synonymous SNV . 0 34 hm5C_associated_SNPs_19850 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_21048 DeepMRMD:1;iRNA_m5C:0.999536712157813 21049 chr14 73576075 73576075 1 + C T COAD 73576058 + 73576038 73576078 41 TCACTTTTACAGAGGAAGTGCTCTTCAGAAAAGGTTGCGTG TCACTTTTACAGAGGAAGTGCTCTTCAGAAAAGGTTGTGTG < 41bp 1 0.0944222552452767 1 0.0988493263721466 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576058 chr14:73576075 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_19851 0 0 1 0 1 Nucleus 1 0.500231643281952 1 0.999536713436096 hm5C_site_21049 DeepMRMD:1;iRNA_m5C:0.999536713436096 21050 chr14 73576075 73576075 1 + C T COAD 73576060 + 73576040 73576080 41 ACTTTTACAGAGGAAGTGCTCTTCAGAAAAGGTTGCGTGAT ACTTTTACAGAGGAAGTGCTCTTCAGAAAAGGTTGTGTGAT < 41bp 1 0.553176503920816 1 0.264403343200684 experiment 0.893646992158368 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576060 chr14:73576075 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_19852 0 0 1 0 1 Nucleus 1 0.500200539884259 1 0.999598920231482 hm5C_site_21050 DeepMRMD:1;iRNA_m5C:0.999598920231482 21051 chr2 207174090 207174090 1 + T C COAD 207174099 + 207174079 207174119 41 CTATATTATTCTGGGAGAGCCAAGTTGTCAATCTTGTGGTT CTATATTATTCCGGGAGAGCCAAGTTGTCAATCTTGTGGTT < 41bp 1 0.366023180422263 1 0.674972593784332 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207174099 chr2:207174090 nonsynonymous SNV 0.429 3 12 hm5C_associated_SNPs_19853 0 0 1 0 0 Nucleus 1 0.50023148833349 0.650054812431336 0.99953702333302 hm5C_site_21051 DeepMRMD:0.650054812431336;iRNA_m5C:0.99953702333302 21052 chr11 67017880 67017880 1 + G T COAD 67017891 + 67017871 67017911 41 GAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACGCTAC GAAAGCCAATATCCGGGGATCGTACCTCACTGTCACGCTAC < 41bp 1 0.102422575148217 1 0.0794655084609985 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67017891 chr11:67017880 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_19854 0 0 1 0 0 Cytosol 1 0.500231643917778 1 0.999536712164445 hm5C_site_21052 DeepMRMD:1;iRNA_m5C:0.999536712164445 21053 chr19 19638843 19638843 1 + C T COAD 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCTGCTGGGTGCCCCCCTTGATCGGGGAGCTG < 41bp 1 0.114956962461149 1 0.039694756269455 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638843 nonsynonymous SNV 0.377 4 12 hm5C_associated_SNPs_19855 0 0 1 0 2 Endoplasmic reticulum 1 0.500231651328203 1 0.999536697343594 hm5C_site_21053 DeepMRMD:1;iRNA_m5C:0.999536697343594 21054 chr14 75746599 75746599 1 + C T COAD 75746582 + 75746562 75746602 41 CCTTCTGTTTTGTTCTAGGACTTCTGCACGGACCTGGCCGT CCTTCTGTTTTGTTCTAGGACTTCTGCACGGACCTGGTCGT < 41bp 1 0.177200683583836 1 0.0185528993606567 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746582 chr14:75746599 nonsynonymous SNV 0.981 0 38 hm5C_associated_SNPs_19856 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_21054 DeepMRMD:1;iRNA_m5C:0.999536712157815 21055 chr14 75746599 75746599 1 + C T COAD 75746590 + 75746570 75746610 41 TTTGTTCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTG TTTGTTCTAGGACTTCTGCACGGACCTGGTCGTCTCCAGTG < 41bp 1 0.418926907171918 1 0.165351539850235 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746590 chr14:75746599 nonsynonymous SNV 0.981 0 30 hm5C_associated_SNPs_19857 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643915665 1 0.999536712168669 hm5C_site_21055 DeepMRMD:1;iRNA_m5C:0.999536712168669 21056 chr14 75746599 75746599 1 + C T COAD 75746594 + 75746574 75746614 41 TTCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAA TTCTAGGACTTCTGCACGGACCTGGTCGTCTCCAGTGCCAA < 41bp 1 0.215671228740254 1 0.10753932595253 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746594 chr14:75746599 nonsynonymous SNV 0.981 0 26 hm5C_associated_SNPs_19858 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921098 1 0.999536712157805 hm5C_site_21056 DeepMRMD:1;iRNA_m5C:0.999536712157805 21057 chr14 75746599 75746599 1 + C T COAD 75746595 + 75746575 75746615 41 TCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAAC TCTAGGACTTCTGCACGGACCTGGTCGTCTCCAGTGCCAAC < 41bp 1 0.560883116750792 1 0.0788122415542603 experiment 0.878233766498416 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746595 chr14:75746599 nonsynonymous SNV 0.981 0 25 hm5C_associated_SNPs_19859 0 0 1 0 1 Endoplasmic reticulum 1 0.500231650317922 1 0.999536699364156 hm5C_site_21057 DeepMRMD:1;iRNA_m5C:0.999536699364156 21058 chr14 75746599 75746599 1 + C T COAD 75746600 + 75746580 75746620 41 GACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCAT GACTTCTGCACGGACCTGGTCGTCTCCAGTGCCAACTTCAT < 41bp 1 0.0851974095351506 1 0.037002295255661 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746600 chr14:75746599 nonsynonymous SNV 0.981 0 20 hm5C_associated_SNPs_19860 0 0 1 0 1 Endoplasmic reticulum 1 0.500231775099188 1 0.999536449801624 hm5C_site_21058 DeepMRMD:1;iRNA_m5C:0.999536449801624 21059 chr14 75746599 75746599 1 + C T COAD 75746605 + 75746585 75746625 41 CTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCA CTGCACGGACCTGGTCGTCTCCAGTGCCAACTTCATTCCCA < 41bp 1 0.395048525990696 1 0.246343225240707 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746605 chr14:75746599 nonsynonymous SNV 0.981 0 15 hm5C_associated_SNPs_19861 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164360555 1 0.9995367127889 hm5C_site_21059 DeepMRMD:1;iRNA_m5C:0.9995367127889 21060 chr14 75746599 75746599 1 + C T COAD 75746606 + 75746586 75746626 41 TGCACGGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCAC TGCACGGACCTGGTCGTCTCCAGTGCCAACTTCATTCCCAC < 41bp 1 0.453106760624916 1 0.81266975402832 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746606 chr14:75746599 nonsynonymous SNV 0.981 0 14 hm5C_associated_SNPs_19862 0 0 1 0 1 Endoplasmic reticulum 1 0.500231649829316 0.37466049194336 0.999536700341368 hm5C_site_21060 DeepMRMD:0.37466049194336;iRNA_m5C:0.999536700341368 21061 chr14 75746599 75746599 1 + C T COAD 75746611 + 75746591 75746631 41 GGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCA GGACCTGGTCGTCTCCAGTGCCAACTTCATTCCCACGGTCA < 41bp 1 0.0674477231258913 1 0.0567258298397064 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746611 chr14:75746599 nonsynonymous SNV 0.981 0 9 hm5C_associated_SNPs_19863 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_21061 DeepMRMD:1;iRNA_m5C:0.999536712157818 21062 chr14 75746599 75746599 1 + C T COAD 75746612 + 75746592 75746632 41 GACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCAC GACCTGGTCGTCTCCAGTGCCAACTTCATTCCCACGGTCAC < 41bp 1 0.28765995949241 1 0.145311832427979 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746612 chr14:75746599 nonsynonymous SNV 0.981 0 8 hm5C_associated_SNPs_19864 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643527398 1 0.999536712945204 hm5C_site_21062 DeepMRMD:1;iRNA_m5C:0.999536712945204 21063 chr14 75746599 75746599 1 + C T COAD 75746615 + 75746595 75746635 41 CTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGC CTGGTCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGC < 41bp 1 0.554517272205697 1 0.425160646438599 experiment 0.890965455588606 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746615 chr14:75746599 nonsynonymous SNV 0.981 0 5 hm5C_associated_SNPs_19865 0 0 1 0 1 Endoplasmic reticulum 1 0.500231675366888 1 0.999536649266223 hm5C_site_21063 DeepMRMD:1;iRNA_m5C:0.999536649266223 21064 chr14 75746599 75746599 1 + C T COAD 75746618 + 75746598 75746638 41 GCCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGCCAT GTCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGCCAT < 41bp 1 0.030707153654926 1 0.573199331760406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746618 chr14:75746599 nonsynonymous SNV 0.981 0 2 hm5C_associated_SNPs_19866 0 0 1 0 1 Endoplasmic reticulum 1 0.500231614947481 0.853601336479188 0.999536770105039 hm5C_site_21064 DeepMRMD:0.853601336479188;iRNA_m5C:0.999536770105039 21065 chr20 62521229 62521229 1 + C T COAD 62521246 + 62521226 62521266 41 GAACGGCAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG GAATGGCAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG < 41bp 1 0.235406037825065 1 0.0503987073898315 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62521246 chr20:62521229 synonymous SNV 0.971 0 4 hm5C_associated_SNPs_19867 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21065 DeepMRMD:1;iRNA_m5C:0.999536712157815 21066 chr16 67006817 67006817 1 + G A COAD 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAATTCAACCAGGCGGAACAATATCTAGAGATCAACCCA < 41bp 1 0.268001301920251 1 0.218219369649887 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006817 synonymous SNV . 0 29 hm5C_associated_SNPs_19868 0 0 1 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21066 DeepMRMD:1;iRNA_m5C:0.999536712157815 21067 chr6 125550343 125550343 1 + G C COAD 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GAGATAAAACAAAAACTCGCCATGAACCTGATGAATGAATT < 41bp 1 0.249308268807236 1 0.0699096918106079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550343 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_19869 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21067 DeepMRMD:1;iRNA_m5C:0.999536712157815 21068 chr20 60348210 60348210 1 + G A COAD 60348215 + 60348195 60348235 41 TGCCCGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTG TGCCCGAGAACTCGCACGGGCCCTTCCCGCAGCAGCTCGTG < 41bp 1 0.0400350197413999 1 0.0192351341247559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348215 chr20:60348210 nonsynonymous SNV 0.153 4 16 hm5C_associated_SNPs_19870 0 0 0 0 0 exosome 1 0.500231643914939 1 0.999536712170123 hm5C_site_21068 DeepMRMD:1;iRNA_m5C:0.999536712170123 21069 chr20 60348210 60348210 1 + G A COAD 60348217 + 60348197 60348237 41 CCCGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTGAG CCCGAGAACTCGCACGGGCCCTTCCCGCAGCAGCTCGTGAG < 41bp 1 0.134350402242899 1 0.0288518667221069 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348217 chr20:60348210 nonsynonymous SNV 0.153 4 14 hm5C_associated_SNPs_19871 0 0 0 0 0 exosome 1 0.500231643921135 1 0.99953671215773 hm5C_site_21069 DeepMRMD:1;iRNA_m5C:0.99953671215773 21070 chr13 24797293 24797293 1 + T C COAD 24797292 + 24797272 24797312 41 CCAGCCAAGCTTGTGCGCCTCTTTTCCACCAGTCGGAAGAG CCAGCCAAGCTTGTGCGCCTCCTTTCCACCAGTCGGAAGAG < 41bp 1 0.0236472122982343 1 0.0121486783027649 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24797292 chr13:24797293 nonsynonymous SNV 0.038 2 22 hm5C_associated_SNPs_19872 0 0 0 0 0 Cytosol 1 0.500231644046005 1 0.999536711907991 hm5C_site_21070 DeepMRMD:1;iRNA_m5C:0.999536711907991 21071 chr3 58092595 58092595 1 + G C COAD 58092593 + 58092573 58092613 41 AGCCACGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC AGCCACGGGAGGCTACAACCCTCATCTGGTGAATCAGCTGC < 41bp 1 0.324934037900224 1 0.504129230976105 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092593 chr3:58092595 nonsynonymous SNV 0.994 5 23 hm5C_associated_SNPs_19873 0 0 1 0 1 Cytosol 1 0.50023164315532 0.99174153804779 0.99953671368936 hm5C_site_21071 DeepMRMD:0.99174153804779;iRNA_m5C:0.99953671368936 21072 chr3 58092595 58092595 1 + G C COAD 58092598 + 58092578 58092618 41 CGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGCTGTGC CGGGAGGCTACAACCCTCATCTGGTGAATCAGCTGCTGTGC < 41bp 1 0.508729157192465 1 0.381053566932678 experiment 0.982541685615069 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092598 chr3:58092595 nonsynonymous SNV 0.994 5 18 hm5C_associated_SNPs_19874 0 0 1 0 1 Cytosol 1 0.500231534143257 1 0.999536931713487 hm5C_site_21072 DeepMRMD:1;iRNA_m5C:0.999536931713487 21073 chr2 233681731 233681731 1 + C T COAD 233681725 + 233681705 233681745 41 AAAGGCGAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGTA AAAGGCGAGAGGAAGAAGAACTTGCCTGAAGGAAACAGGTA < 41bp 1 0.153715537753945 1 0.223865002393723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681725 chr2:233681731 stopgain 0.997 1 27 hm5C_associated_SNPs_19875 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_21073 DeepMRMD:1;iRNA_m5C:0.999536712157815 21074 chr19 806463 806463 1 + G T COAD 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCT < 41bp 1 0.383823480061708 1 0.0255390107631683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806463 synonymous SNV . 0 41 hm5C_associated_SNPs_19877 0 0 1 0 2 Cytosol 1 0.500231771628225 1 0.99953645674355 hm5C_site_21074 DeepMRMD:1;iRNA_m5C:0.99953645674355 21075 chr19 806463 806463 1 + G T COAD 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTG < 41bp 1 0.537348726471577 1 0.152504503726959 experiment 0.925302547056845 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806463 synonymous SNV . 0 40 hm5C_associated_SNPs_19878 0 0 1 0 2 Cytosol 1 0.500231643894637 1 0.999536712210725 hm5C_site_21075 DeepMRMD:1;iRNA_m5C:0.999536712210725 21076 chr19 806463 806463 1 + G T COAD 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTGC < 41bp 1 0.5278837487041 1 0.457901239395142 experiment 0.944232502591801 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806463 synonymous SNV . 0 39 hm5C_associated_SNPs_19879 0 0 1 0 2 Cytosol 1 0.500231634135187 1 0.999536731729626 hm5C_site_21076 DeepMRMD:1;iRNA_m5C:0.999536731729626 21077 chr19 806463 806463 1 + G T COAD 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTGCGGCGG < 41bp 1 0.0676208691593954 1 0.10689914226532 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806463 synonymous SNV . 0 34 hm5C_associated_SNPs_19881 0 0 1 0 2 Cytosol 1 0.500231643923807 1 0.999536712152385 hm5C_site_21077 DeepMRMD:1;iRNA_m5C:0.999536712152385 21078 chr19 806463 806463 1 + G T COAD 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCTGCGGCGGC < 41bp 1 0.205688488143172 1 0.128438472747803 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806463 synonymous SNV . 0 33 hm5C_associated_SNPs_19882 0 0 1 0 2 Cytosol 1 0.500231643921117 1 0.999536712157765 hm5C_site_21078 DeepMRMD:1;iRNA_m5C:0.999536712157765 21079 chr19 11123732 11123732 1 + G A COAD 11123747 + 11123727 11123767 41 ATCACGTACCTCATGGAGCACAAACGCATCAATGGGCCCTT ATCACATACCTCATGGAGCACAAACGCATCAATGGGCCCTT < 41bp 1 0.166808554655197 1 0.0679062902927399 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11123747 chr19:11123732 synonymous SNV . 0 6 hm5C_associated_SNPs_19883 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21079 DeepMRMD:1;iRNA_m5C:0.999536712157815 21080 chr3 14712639 14712639 1 + G A COAD 14712656 + 14712636 14712676 41 CAAGCCCCCACAGTTACTTTCAAAACTCTGGATGACATGAT CAAACCCCCACAGTTACTTTCAAAACTCTGGATGACATGAT < 41bp 1 0.442834057766539 1 0.506671011447906 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14712656 chr3:14712639 nonsynonymous SNV 0.937 0 4 hm5C_associated_SNPs_19884 0 0 1 0 0 Cytosol 1 0.500231643921095 0.986657977104188 0.999536712157809 hm5C_site_21080 DeepMRMD:0.986657977104188;iRNA_m5C:0.999536712157809 21081 chr22 32498100 32498100 1 + C A COAD 32498104 + 32498084 32498124 41 GGGAGCTGCATGGAGCCCAGCAACTGTCCCACGATTATCTG GGGAGCTGCATGGAGCACAGCAACTGTCCCACGATTATCTG < 41bp 1 0.337311787067937 1 0.0918062627315521 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32498104 chr22:32498100 nonsynonymous SNV 0.946 3 17 hm5C_associated_SNPs_19885 0 0 0 0 1 Nucleus 1 0.500231644104226 1 0.999536711791548 hm5C_site_21081 DeepMRMD:1;iRNA_m5C:0.999536711791548 21082 chrX 21995187 21995187 1 + C A COAD 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACACATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA < 41bp 1 0.157176460252246 1 0.443859785795212 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995187 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_19887 0 0 1 0 1 Ribosome 1 0.500231643921066 1 0.999536712157868 hm5C_site_21082 DeepMRMD:1;iRNA_m5C:0.999536712157868 21083 chr11 73073120 73073120 1 + G A COAD 73073111 + 73073091 73073131 41 TGTGCGGCTCCCACCCTGAACAGCTGCCCGGAGCCCTCGCC TGTGCGGCTCCCACCCTGAACAGCTGCCCAGAGCCCTCGCC < 41bp 1 0.414137933604669 1 0.383868396282196 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73073111 chr11:73073120 synonymous SNV . 0 30 hm5C_associated_SNPs_19888 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21083 DeepMRMD:1;iRNA_m5C:0.999536712157815 21084 chr19 10897276 10897276 1 + C A COAD 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG GGGAGTCGCTGCCGGCCATACGTAGCAAACTACAGAGCCAG < 41bp 1 0.273157928498065 1 0.244822442531586 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897276 nonsynonymous SNV 0.115 1 18 hm5C_associated_SNPs_19889 0 0 1 0 1 Nucleus 1 0.500231643378265 1 0.99953671324347 hm5C_site_21084 DeepMRMD:1;iRNA_m5C:0.99953671324347 21085 chr5 68692323 68692323 1 + T A COAD 68692324 + 68692304 68692344 41 TCATTGCCAAGGAGGAGGATCAAGTTTTCGACCCTTGCACA TCATTGCCAAGGAGGAGGAACAAGTTTTCGACCCTTGCACA < 41bp 1 0.611617820591463 1 0.413990288972855 experiment 0.776764358817075 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD17 ENSG00000152942 CDS Human protein_coding chr5:68692324 chr5:68692323 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_19891 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21085 DeepMRMD:1;iRNA_m5C:0.999536712157815 21086 chr1 16046284 16046284 1 + A G COAD 16046286 + 16046266 16046306 41 ACTACTACAAACCTCAGTACCTGCTGGACTTTGAAGACCGC ACTACTACAAACCTCAGTGCCTGCTGGACTTTGAAGACCGC < 41bp 1 0.232330096891153 1 0.333332479000092 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16046286 chr1:16046284 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_19892 0 0 1 0 1 chromatin 1 0.500231634155801 1 0.999536731688398 hm5C_site_21086 DeepMRMD:1;iRNA_m5C:0.999536731688398 21087 chr4 77660164 77660164 1 + C T COAD 77660170 + 77660150 77660190 41 CTGGCATCTCTGGCCGGGAGCGTTCAGGCTCCATGGACAAT CTGGCATCTCTGGCTGGGAGCGTTCAGGCTCCATGGACAAT < 41bp 1 0.0147255174019516 1 0.0812287628650665 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660170 chr4:77660164 nonsynonymous SNV 0.010 3 15 hm5C_associated_SNPs_19893 0 0 0 0 0 Ribosome 1 0.500228589812254 1 0.999542820375492 hm5C_site_21087 DeepMRMD:1;iRNA_m5C:0.999542820375492 21088 chr4 77660164 77660164 1 + C T COAD 77660180 + 77660160 77660200 41 TGGCCGGGAGCGTTCAGGCTCCATGGACAATACTTCTGCTC TGGCTGGGAGCGTTCAGGCTCCATGGACAATACTTCTGCTC < 41bp 1 0.107969720629557 1 0.407255679368973 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660180 chr4:77660164 nonsynonymous SNV 0.010 3 5 hm5C_associated_SNPs_19894 0 0 0 0 0 Ribosome 1 0.500231616457019 1 0.999536767085961 hm5C_site_21088 DeepMRMD:1;iRNA_m5C:0.999536767085961 21089 chr2 128867285 128867285 1 + T C COAD 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGACACCCTTGAGGCTCTTCTACTGA < 41bp 1 0.0427943010891544 1 0.0876602232456207 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867285 synonymous SNV . 0 19 hm5C_associated_SNPs_19895 0 0 1 0 2 Nucleus 1 0.500231643921085 1 0.99953671215783 hm5C_site_21089 DeepMRMD:1;iRNA_m5C:0.99953671215783 21090 chrX 41075213 41075213 1 + A G COAD 41075229 + 41075209 41075249 41 CTAAAGCGATTTGACTATGACTGGGAAAGAGAATGTGCAAT CTAAGGCGATTTGACTATGACTGGGAAAGAGAATGTGCAAT < 41bp 1 0.38244337341899 1 0.124890595674515 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41075229 chrX:41075213 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_19896 0 0 1 0 1 Nucleus 1 0.500231646378599 1 0.999536707242801 hm5C_site_21090 DeepMRMD:1;iRNA_m5C:0.999536707242801 21091 chr20 57289627 57289627 1 + C G COAD 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAAGAGCCCCAGCTCCTGTGCTGGCCTC < 41bp 1 0.416030841954214 1 0.383446782827377 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289627 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_19897 0 0 1 0 2 cytosol 1 0.500231643921157 1 0.999536712157686 hm5C_site_21091 DeepMRMD:1;iRNA_m5C:0.999536712157686 21092 chr13 48936984 48936984 1 + G A COAD 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTCACCTCAAACACCCAGGCGAGGTCAGAACAGGAGTGCA < 41bp 1 0.578528397538926 1 0.86787474155426 experiment 0.842943204922147 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48936984 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_19898 0 0 0 0 1 Nucleus 1 0.500231648291903 0.26425051689148 0.999536703416194 hm5C_site_21092 DeepMRMD:0.26425051689148;iRNA_m5C:0.999536703416194 21093 chr8 37554688 37554688 1 + C T COAD 37554680 + 37554660 37554700 41 CAGCTGGACGCCAAGAAGAGCCCCTTGGCGCTGCTGGCTCA CAGCTGGACGCCAAGAAGAGCCCCTTGGTGCTGCTGGCTCA < 41bp 1 0.15763199155111 1 0.0920411050319672 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF703 ENSG00000183779 CDS Human protein_coding chr8:37554680 chr8:37554688 nonsynonymous SNV 0.997 2 29 hm5C_associated_SNPs_19899 0 0 1 0 1 exosome 1 0.500231643917558 1 0.999536712164884 hm5C_site_21093 DeepMRMD:1;iRNA_m5C:0.999536712164884 21094 chr7 150068641 150068641 1 + G A COAD 150068639 + 150068619 150068659 41 GCCCCCTTCTTAGCACTGCACCGCCAGGTCCATGCTGCTGC GCCCCCTTCTTAGCACTGCACCACCAGGTCCATGCTGCTGC < 41bp 1 0.165402858808849 1 0.02479487657547 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150068639 chr7:150068641 nonsynonymous SNV 0.635 0 23 hm5C_associated_SNPs_19900 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644193103 1 0.999536711613794 hm5C_site_21094 DeepMRMD:1;iRNA_m5C:0.999536711613794 21095 chrX 48564955 48564955 1 + G A COAD 48564940 + 48564920 48564960 41 TCATAGACAACCTTGACGAGCGGCTGCCCCGCATCGCTTTC TCATAGACAACCTTGACGAGCGGCTGCCCCGCATCACTTTC < 41bp 1 0.38688798861062 1 0.180110812187195 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564940 chrX:48564955 nonsynonymous SNV 0.225 4 36 hm5C_associated_SNPs_19901 0 0 1 0 1 Ribosome 1 0.500231643920971 1 0.999536712158059 hm5C_site_21095 DeepMRMD:1;iRNA_m5C:0.999536712158059 21096 chr16 66919208 66919208 1 + G A COAD 66919216 + 66919196 66919236 41 AGGCTACTGGGCGTCCTCATCCCCTGCAGGGCCTTTGGGGA AGGCTACTGGGCATCCTCATCCCCTGCAGGGCCTTTGGGGA < 41bp 1 0.365366212424319 1 0.828943014144897 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDP2 ENSG00000172840 CDS Human protein_coding chr16:66919216 chr16:66919208 nonsynonymous SNV 0.973 0 13 hm5C_associated_SNPs_19902 0 0 1 0 0 nucleolus 1 0.500231643921092 0.342113971710206 0.999536712157815 hm5C_site_21096 DeepMRMD:0.342113971710206;iRNA_m5C:0.999536712157815 21097 chr3 127323812 127323812 1 + G A COAD 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGGGCCACGGAGGACGGCGAAGAGGACGAGGAGATGAT < 41bp 1 0.423156401872171 1 0.528241515159607 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323812 synonymous SNV . 0 24 hm5C_associated_SNPs_19903 0 0 1 0 2 Cytosol 1 0.500231636012853 0.943516969680786 0.999536727974294 hm5C_site_21097 DeepMRMD:0.943516969680786;iRNA_m5C:0.999536727974294 21098 chr14 24900805 24900805 1 + C A COAD 24900790 + 24900770 24900810 41 CTGCCTGGCCTGGAGCACGTCAGCCCATCTGGTGCCCAGGG CTGCCTGGCCTGGAGCACGTCAGCCCATCTGGTGCACAGGG < 41bp 1 0.443860055139674 1 0.327360272407532 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KHNYN ENSG00000100441 CDS Human protein_coding chr14:24900790 chr14:24900805 nonsynonymous SNV 0.575 4 36 hm5C_associated_SNPs_19904 0 0 1 0 0 Cytosol 1 0.500231643920444 1 0.999536712159112 hm5C_site_21098 DeepMRMD:1;iRNA_m5C:0.999536712159112 21099 chr16 3707755 3707755 1 + G A COAD 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CGAGGCGCCATTGTTCCCGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.578005061485437 1 0.439653128385544 experiment 0.843989877029126 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707755 nonsynonymous SNV 0.002 0 10 hm5C_associated_SNPs_19905 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_21099 DeepMRMD:1;iRNA_m5C:0.999536712157815 21100 chr1 155156593 155156593 1 + T C COAD 155156595 + 155156575 155156615 41 TCATCGGGGGTGGCGCAGTACAGCTCCAGGAGCCAGTGGGC TCATCGGGGGTGGCGCAGCACAGCTCCAGGAGCCAGTGGGC < 41bp 1 0.633213862677786 1 0.22155636548996 experiment 0.733572274644428 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155156595 chr1:155156593 nonsynonymous SNV 0.989 2 19 hm5C_associated_SNPs_19906 0 0 0 0 0 nucleolus 1 0.500231644084042 1 0.999536711831917 hm5C_site_21100 DeepMRMD:1;iRNA_m5C:0.999536711831917 21101 chr11 120352054 120352054 1 + C A COAD 120352068 + 120352048 120352088 41 GCAGCCCATGACAGGCATCCCTGCTGTGGAATCCACCCACC GCAGCCAATGACAGGCATCCCTGCTGTGGAATCCACCCACC < 41bp 1 0.663152699340942 1 0.145150929689407 experiment 0.673694601318117 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120352068 chr11:120352054 synonymous SNV . 0 7 hm5C_associated_SNPs_19907 0 0 1 0 1 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_21101 DeepMRMD:1;iRNA_m5C:0.999536712157806 21102 chr22 45822020 45822020 1 + C T COAD 45822019 + 45821999 45822039 41 CAGGAGCAGCTGGAGCAGATCCGCCTAGTCCAGAAGCAGCA CAGGAGCAGCTGGAGCAGATCTGCCTAGTCCAGAAGCAGCA < 41bp 1 0.605040299801183 1 0.393037438392639 experiment 0.789919400397634 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45822019 chr22:45822020 nonsynonymous SNV 0.673 1 22 hm5C_associated_SNPs_19908 0 0 0 0 1 exosome 1 0.500232079276234 1 0.999535841447533 hm5C_site_21102 DeepMRMD:1;iRNA_m5C:0.999535841447533 21103 chr16 30736394 30736394 1 + T C COAD 30736401 + 30736381 30736421 41 CACCTCGTTCCCCTTTTTATCTGGTAAGTTTTACTTCCTCA CACCTCGTTCCCCCTTTTATCTGGTAAGTTTTACTTCCTCA < 41bp 1 0.398818731919249 1 0.242666363716125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30736401 chr16:30736394 synonymous SNV . 0 14 hm5C_associated_SNPs_19909 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21103 DeepMRMD:1;iRNA_m5C:0.999536712157815 21104 chr1 156705648 156705648 1 + C T COAD 156705645 + 156705625 156705665 41 CAGCCTGGCTCTACTGCTTGCCCCACTGGTGGAGACGCTTA CAGCCTGGCTCTACTGCTTGCCCTACTGGTGGAGACGCTTA < 41bp 1 0.256842294301012 1 0.0475841164588928 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156705645 chr1:156705648 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_19911 0 0 1 0 0 chromatin 1 0.500231643921107 1 0.999536712157785 hm5C_site_21104 DeepMRMD:1;iRNA_m5C:0.999536712157785 21105 chr6 29910615 29910615 1 + T C COAD 29910604 + 29910584 29910624 41 GGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACAC GGGGAGCCCCGCTTCATCGCCGTGGGCTACGCGGACGACAC < 41bp 1 0.625834134972447 1 0.786264419555664 experiment 0.748331730055106 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29910604 chr6:29910615 nonsynonymous SNV 0.936 3 32 hm5C_associated_SNPs_19912 0 0 0 0 0 Endoplasmic reticulum 1 0.50023164392109 0.427471160888672 0.99953671215782 hm5C_site_21105 DeepMRMD:0.427471160888672;iRNA_m5C:0.99953671215782 21106 chr19 50755952 50755952 1 + C T COAD 50755957 + 50755937 50755977 41 CCCTCTGAATGACAACGTCGCAGCCTTGCTCCACCAGAGCA CCCTCTGAATGACAATGTCGCAGCCTTGCTCCACCAGAGCA < 41bp 1 0.168500246739467 1 0.314361363649368 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50755957 chr19:50755952 synonymous SNV . 0 16 hm5C_associated_SNPs_19915 0 0 1 0 2 cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_21106 DeepMRMD:1;iRNA_m5C:0.999536712157817 21107 chrX 153688730 153688730 1 + G A COAD 153688731 + 153688711 153688751 41 TGCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGC TGCGGGCCCATGTCACGGGACCCGTCGAGGACAACGCTCGC < 41bp 1 0.0846709771584158 1 0.0462945997714996 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688731 chrX:153688730 synonymous SNV . 0 20 hm5C_associated_SNPs_19916 0 0 0 0 0 Endoplasmic reticulum 1 0.500231624149087 1 0.999536751701825 hm5C_site_21107 DeepMRMD:1;iRNA_m5C:0.999536751701825 21108 chrX 153688730 153688730 1 + G A COAD 153688732 + 153688712 153688752 41 GCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCT GCGGGCCCATGTCACGGGACCCGTCGAGGACAACGCTCGCT < 41bp 1 0.0348933926105465 1 0.0547650456428528 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688732 chrX:153688730 synonymous SNV . 0 19 hm5C_associated_SNPs_19917 0 0 0 0 0 Endoplasmic reticulum 1 0.500231674928627 1 0.999536650142746 hm5C_site_21108 DeepMRMD:1;iRNA_m5C:0.999536650142746 21109 chrX 153688730 153688730 1 + G A COAD 153688733 + 153688713 153688753 41 CGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCTG CGGGCCCATGTCACGGGACCCGTCGAGGACAACGCTCGCTG < 41bp 1 0.330928539171468 1 0.359493970870972 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688733 chrX:153688730 synonymous SNV . 0 18 hm5C_associated_SNPs_19918 0 0 0 0 0 Endoplasmic reticulum 1 0.500231641110482 1 0.999536717779036 hm5C_site_21109 DeepMRMD:1;iRNA_m5C:0.999536717779036 21110 chr5 176524306 176524306 1 + C T COAD 176524296 + 176524276 176524316 41 CGCCCCACCTCTCGCAGGTACGGGCTGATGCGTGAGTGCTG CGCCCCACCTCTCGCAGGTACGGGCTGATGTGTGAGTGCTG < 41bp 1 0.487084354410108 1 0.527297735214233 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524296 chr5:176524306 nonsynonymous SNV 0.917 5 31 hm5C_associated_SNPs_19919 0 0 1 0 2 Endoplasmic reticulum 1 0.500230921028695 0.945404529571534 0.99953815794261 hm5C_site_21110 DeepMRMD:0.945404529571534;iRNA_m5C:0.99953815794261 21111 chr4 44680642 44680642 1 + G A COAD 44680627 + 44680607 44680647 41 GTACCCTCTCCTGACGCCTCCGCCGCCCGGGTCATGTGGAC GTACCCTCTCCTGACGCCTCCGCCGCCCGGGTCATATGGAC < 41bp 1 0.630144836601662 1 0.579216003417969 experiment 0.739710326796675 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680627 chr4:44680642 nonsynonymous SNV 0.040 1 36 hm5C_associated_SNPs_19920 0 0 1 0 0 Ribosome 1 0.500231643899338 0.841567993164062 0.999536712201324 hm5C_site_21111 DeepMRMD:0.841567993164062;iRNA_m5C:0.999536712201324 21112 chr1 33745911 33745911 1 + T A COAD 33745921 + 33745901 33745941 41 ATCAAGACAATCCAGGGCCACGGCCTGCTTGGCCCCCCCAA ATCAAGACAAACCAGGGCCACGGCCTGCTTGGCCCCCCCAA < 41bp 1 0.492887476644993 1 0.620055615901947 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33745921 chr1:33745911 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_19921 0 0 1 0 0 Nucleus 1 0.500231643921093 0.759888768196106 0.999536712157815 hm5C_site_21112 DeepMRMD:0.759888768196106;iRNA_m5C:0.999536712157815 21113 chr11 66411264 66411264 1 + G A COAD 66411252 + 66411232 66411272 41 TATAATTACGCAGAGCAGACCCTGTCCCAGCTGCCACAAGT TATAATTACGCAGAGCAGACCCTGTCCCAGCTACCACAAGT < 41bp 1 0.0493984501318911 1 0.0317440032958984 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66411252 chr11:66411264 synonymous SNV . 0 33 hm5C_associated_SNPs_19923 0 0 1 0 0 unknown 1 0.500231643878237 1 0.999536712243527 hm5C_site_21113 DeepMRMD:1;iRNA_m5C:0.999536712243527 21114 chr16 67006804 67006804 1 + C T COAD 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAATTCAACCAGGTGGAACAATATCTGGAGATCAACCCA < 41bp 1 0.292985023339967 1 0.391093730926514 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006804 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_19924 0 0 1 0 1 nucleolus 1 0.500231643924974 1 0.999536712150052 hm5C_site_21114 DeepMRMD:1;iRNA_m5C:0.999536712150052 21115 chrX 41025392 41025392 1 + A C COAD 41025376 + 41025356 41025396 41 TTTTGAGCGATTCTTCAAAGCTGTGAATTGTCGAGAAGGAA TTTTGAGCGATTCTTCAAAGCTGTGAATTGTCGAGACGGAA < 41bp 1 0.159404276531296 1 0.0600881576538086 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41025376 chrX:41025392 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_19925 0 0 1 0 0 Nucleus 1 0.500231641778409 1 0.999536716443183 hm5C_site_21115 DeepMRMD:1;iRNA_m5C:0.999536716443183 21116 chr19 45851943 45851943 1 + T C COAD 45851950 + 45851930 45851970 41 CAGACCTTCTCCATGATGCCCTGCAGATCCGGGAGCAGACG CAGACCTTCTCCACGATGCCCTGCAGATCCGGGAGCAGACG < 41bp 1 0.539620409107062 1 0.310265839099884 experiment 0.920759181785876 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851950 chr19:45851943 synonymous SNV . 0 14 hm5C_associated_SNPs_19926 0 0 0 0 2 nucleolus 1 0.500231643824447 1 0.999536712351107 hm5C_site_21116 DeepMRMD:1;iRNA_m5C:0.999536712351107 21117 chr9 124535539 124535539 1 + C T COAD 124535558 + 124535538 124535578 41 GCTGGCCCCCAGAGGAGGATCGACCAGCCTCCGCCCCCACC GTTGGCCCCCAGAGGAGGATCGACCAGCCTCCGCCCCCACC < 41bp 1 0.324562766300023 1 0.127650767564774 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124535558 chr9:124535539 nonsynonymous SNV 0.987 3 2 hm5C_associated_SNPs_19927 0 0 1 0 0 Ribosome 1 0.500231630147659 1 0.999536739704681 hm5C_site_21117 DeepMRMD:1;iRNA_m5C:0.999536739704681 21118 chr10 102762419 102762419 1 + C G COAD 102762420 + 102762400 102762440 41 CCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCGCCACCACG CCGGCCCTGTCCCGGGGGGGCAGCTCCTCCCCGCCACCACG < 41bp 1 0.320390510004996 1 0.395991325378418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102762420 chr10:102762419 nonsynonymous SNV 0.816 0 20 hm5C_associated_SNPs_19928 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21118 DeepMRMD:1;iRNA_m5C:0.999536712157815 21119 chr2 228148563 228148563 1 + G T COAD 228148543 + 228148523 228148563 41 CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAG CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAT < 41bp 1 0.617836399352924 1 0.502206861972809 experiment 0.764327201294151 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148543 chr2:228148563 nonsynonymous SNV 0.053 5 41 hm5C_associated_SNPs_19929 0 0 0 0 2 nucleus 1 0.500231643921092 0.995586276054382 0.999536712157815 hm5C_site_21119 DeepMRMD:0.995586276054382;iRNA_m5C:0.999536712157815 21120 chr11 66812106 66812106 1 + C A COAD 66812087 + 66812067 66812107 41 GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCT GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACAT < 41bp 1 0.300266963961324 1 0.126070767641068 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYT12 ENSG00000173227 CDS Human protein_coding chr11:66812087 chr11:66812106 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_19930 0 0 0 0 2 nucleolus 1 0.500231643921096 1 0.999536712157808 hm5C_site_21120 DeepMRMD:1;iRNA_m5C:0.999536712157808 21121 chr5 150027975 150027975 1 + A T COAD 150027987 + 150027967 150028007 41 CTGTCCCAAAACCGAGAGGCCCAGCAGTCCTCACCGGCCCC CTGTCCCATAACCGAGAGGCCCAGCAGTCCTCACCGGCCCC < 41bp 1 0.131076422830661 1 0.086432009935379 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYNPO ENSG00000171992 CDS Human protein_coding chr5:150027987 chr5:150027975 nonsynonymous SNV 0.230 4 9 hm5C_associated_SNPs_19931 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921219 1 0.999536712157562 hm5C_site_21121 DeepMRMD:1;iRNA_m5C:0.999536712157562 21122 chr1 109170856 109170856 1 + C T COAD 109170852 + 109170832 109170872 41 CTGTGGACATTCTAGAACATCAAGCTATGCAAGTCAGCAGT CTGTGGACATTCTAGAACATCAAGTTATGCAAGTCAGCAGT < 41bp 1 0.649945919852057 1 0.399292796850204 experiment 0.700108160295886 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM102B ENSG00000162636 CDS Human protein_coding chr1:109170852 chr1:109170856 synonymous SNV . 0 25 hm5C_associated_SNPs_19932 0 0 0 0 2 Ribosome 1 0.50036210092758 1 0.999275798144839 hm5C_site_21122 DeepMRMD:1;iRNA_m5C:0.999275798144839 21123 chr1 40922640 40922640 1 + A G COAD 40922642 + 40922622 40922662 41 GTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGG GTTAACCTTCAAGGACGTGTCTGTGGACTTCACTCAGGAGG < 41bp 1 0.616530491536937 1 0.503971338272095 experiment 0.766939016926127 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZFP69B ENSG00000187801 CDS Human protein_coding chr1:40922642 chr1:40922640 nonsynonymous SNV 0.981 0 19 hm5C_associated_SNPs_19933 0 0 0 0 1 Nucleus 1 0.500231781271285 0.99205732345581 0.999536437457429 hm5C_site_21123 DeepMRMD:0.99205732345581;iRNA_m5C:0.999536437457429 21124 chr9 100773658 100773658 1 + A G COAD 100773653 + 100773633 100773673 41 GTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT GTAGAAGGGGATGAGGACGACGATGGAGTCAGTGAGGAGGT < 41bp 1 0.533156427638524 1 0.436489820480347 experiment 0.933687144722951 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773653 chr9:100773658 nonsynonymous SNV 0.807 3 26 hm5C_associated_SNPs_19935 0 0 1 0 1 Cytosol 1 0.500231733220832 1 0.999536533558336 hm5C_site_21124 DeepMRMD:1;iRNA_m5C:0.999536533558336 21125 chr9 100773658 100773658 1 + A G COAD 100773662 + 100773642 100773682 41 GATGAGGACGACGATGAAGTCAGTGAGGAGGTCAGTGCAGC GATGAGGACGACGATGGAGTCAGTGAGGAGGTCAGTGCAGC < 41bp 1 0.640920649539254 1 0.58675342798233 experiment 0.718158700921491 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773662 chr9:100773658 nonsynonymous SNV 0.807 3 17 hm5C_associated_SNPs_19936 0 0 1 0 1 Cytosol 1 0.500231699938292 0.82649314403534 0.999536600123415 hm5C_site_21125 DeepMRMD:0.82649314403534;iRNA_m5C:0.999536600123415 21126 chr17 14095457 14095457 1 + G C COAD 14095450 + 14095430 14095470 41 TACACACCACTGAAAAGGATCAGCATTGCCAACACATGGGT TACACACCACTGAAAAGGATCAGCATTCCCAACACATGGGT < 41bp 1 0.667177309629424 1 0.394823640584946 experiment 0.665645380741151 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX10 ENSG00000006695 CDS Human protein_coding chr17:14095450 chr17:14095457 nonsynonymous SNV 0.950 2 28 hm5C_associated_SNPs_19937 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21126 DeepMRMD:1;iRNA_m5C:0.999536712157815 21127 chr17 7467090 7467090 1 + C T COAD 7467100 + 7467080 7467120 41 TCCAAAGTCTCCTCTGGACCCTGACTCGGGTAAGGTGGGAA TCCAAAGTCTTCTCTGGACCCTGACTCGGGTAAGGTGGGAA < 41bp 1 0.384382681973676 1 0.0897980332374573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SENP3 ENSG00000161956 CDS Human protein_coding chr17:7467100 chr17:7467090 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_19938 0 0 1 0 1 Cytosol 1 0.500219021541412 1 0.999561956917175 hm5C_site_21127 DeepMRMD:1;iRNA_m5C:0.999561956917175 21128 chr5 140741107 140741107 1 + G A COAD 140741124 + 140741104 140741144 41 GGCGCCTCTATCGCTCAAATCAGTGCCTCTGACCCTGACTT GGCACCTCTATCGCTCAAATCAGTGCCTCTGACCCTGACTT < 41bp 1 0.215492236523677 1 0.412642270326614 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741124 chr5:140741107 nonsynonymous SNV 0.069 0 4 hm5C_associated_SNPs_19939 0 0 0 0 0 exosome 1 0.500231643922165 1 0.99953671215567 hm5C_site_21128 DeepMRMD:1;iRNA_m5C:0.99953671215567 21129 chr2 197541360 197541360 1 + C T COAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAGCTGTTAGAATCAACTATTGCA < 41bp 1 0.136921294804079 1 0.0728147923946381 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541360 synonymous SNV . 0 24 hm5C_associated_SNPs_19940 0 0 1 7 2 Endoplasmic reticulum 1 0.500231801055449 1 0.999536397889102 hm5C_site_21129 DeepMRMD:1;iRNA_m5C:0.999536397889102 21130 chr19 41096183 41096183 1 + C T COAD 41096188 + 41096168 41096208 41 CGTGGACGGCTCACCCACGACAGCCTTCACAGTGCTGGAGT CGTGGACGGCTCACCTACGACAGCCTTCACAGTGCTGGAGT < 41bp 1 0.65981268960566 1 0.414123028516769 experiment 0.68037462078868 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41096188 chr19:41096183 synonymous SNV . 0 16 hm5C_associated_SNPs_19941 0 0 0 0 0 Ribosome 1 0.500226667384705 1 0.999546665230589 hm5C_site_21130 DeepMRMD:1;iRNA_m5C:0.999546665230589 21131 chr10 103900021 103900021 1 + C T COAD 103900017 + 103899997 103900037 41 GACTCTGCCCAAGCCAGCCCCATGCCAGTTGACTCTGTTGA GACTCTGCCCAAGCCAGCCCCATGTCAGTTGACTCTGTTGA < 41bp 1 0.123837906466784 1 0.256697654724121 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103900017 chr10:103900021 nonsynonymous SNV 0.061 1 25 hm5C_associated_SNPs_19942 0 0 1 0 0 Cytosol 1 0.500407963517225 1 0.999184072965551 hm5C_site_21131 DeepMRMD:1;iRNA_m5C:0.999184072965551 21132 chr22 31998602 31998602 1 + C T COAD 31998614 + 31998594 31998634 41 CCATCCTTCACGCAGAGCGACAGCTTCTGTATAGGTCTTGG CCATCCTTTACGCAGAGCGACAGCTTCTGTATAGGTCTTGG < 41bp 1 0.179713738592798 1 0.182030022144318 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SFI1 ENSG00000198089 CDS Human protein_coding chr22:31998614 chr22:31998602 nonsynonymous SNV 0.294 2 9 hm5C_associated_SNPs_19943 0 0 0 0 1 chromatin 1 0.500231643921091 1 0.999536712157819 hm5C_site_21132 DeepMRMD:1;iRNA_m5C:0.999536712157819 21133 chr16 85682273 85682273 1 + C T COAD 85682293 + 85682273 85682313 41 CCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTC TCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTC < 41bp 1 0.165704730924878 1 0.071210116147995 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85682293 chr16:85682273 synonymous SNV . 0 1 hm5C_associated_SNPs_19944 0 0 1 0 1 Cytosol 1 0.500241801530137 1 0.999516396939725 hm5C_site_21133 DeepMRMD:1;iRNA_m5C:0.999516396939725 21134 chr2 113953763 113953763 1 + G A COAD 113953757 + 113953737 113953777 41 ACAGCCAGACCTGAGAAGGCCCAGCCGTCCCTGCCAGCTGG ACAGCCAGACCTGAGAAGGCCCAGCCATCCCTGCCAGCTGG < 41bp 1 0.111749205229063 1 0.0814476609230042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113953757 chr2:113953763 synonymous SNV . 0 27 hm5C_associated_SNPs_19945 0 0 1 0 1 chromatin 1 0.500231570891022 1 0.999536858217955 hm5C_site_21134 DeepMRMD:1;iRNA_m5C:0.999536858217955 21135 chr2 27292983 27292983 1 + G T COAD 27292979 + 27292959 27292999 41 GGCTGCCTCAGGCCAGGCCCCCACGGCCCCGCTCTGCCCCT GGCTGCCTCAGGCCAGGCCCCCACTGCCCCGCTCTGCCCCT < 41bp 1 0.178449018754096 1 0.13066378235817 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27292979 chr2:27292983 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_19946 0 0 0 0 1 Cytosol 1 0.500231643915581 1 0.999536712168838 hm5C_site_21135 DeepMRMD:1;iRNA_m5C:0.999536712168838 21136 chr17 7814196 7814196 1 + C T COAD 7814192 + 7814172 7814212 41 CGCCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGGCC CGCCGGGTCCCTACGCTACACCTCTGGGGTACGGGGCGGCC < 41bp 1 0.14560299403189 1 0.0220582187175751 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814192 chr17:7814196 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_19947 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21136 DeepMRMD:1;iRNA_m5C:0.999536712157815 21137 chr15 91312368 91312368 1 + T A COAD 91312388 + 91312368 91312408 41 TGCAAGTAACAGACTCATTTCTACTCTGGAGAATCTCTATG AGCAAGTAACAGACTCATTTCTACTCTGGAGAATCTCTATG < 41bp 1 0.36232804035525 1 0.0507834255695343 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91312388 chr15:91312368 stopgain 0.999 1 1 hm5C_associated_SNPs_19948 0 0 1 0 2 Ribosome 1 0.50023164468011 1 0.99953671063978 hm5C_site_21137 DeepMRMD:1;iRNA_m5C:0.99953671063978 21138 chr15 69003153 69003153 1 + G A COAD 69003148 + 69003128 69003168 41 CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTCGA CTGGAGCTGCACGGGCACAGCCGGCATGTGGGGCTGGTCGA < 41bp 1 0.514733775053664 1 0.476945549249649 experiment 0.970532449892673 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69003148 chr15:69003153 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_19949 0 0 0 0 2 exosome 1 0.500231643922308 1 0.999536712155383 hm5C_site_21138 DeepMRMD:1;iRNA_m5C:0.999536712155383 21139 chrX 49031025 49031025 1 + C T COAD 49031034 + 49031014 49031054 41 CCTGCAGACCCCGCAGATGGCCCGGTGTAGGCGAACTTCCC CCTGCAGACCCTGCAGATGGCCCGGTGTAGGCGAACTTCCC < 41bp 1 0.524200758965498 1 0.145536541938782 experiment 0.951598482069005 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLP2 ENSG00000102007 CDS Human protein_coding chrX:49031034 chrX:49031025 synonymous SNV . 0 12 hm5C_associated_SNPs_19950 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21139 DeepMRMD:1;iRNA_m5C:0.999536712157815 21140 chr11 64137816 64137816 1 + C A COAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCATG < 41bp 1 0.410794913811791 1 0.37556067109108 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137816 synonymous SNV . 0 39 hm5C_associated_SNPs_19951 0 0 0 0 2 chromatin 1 0.500231643921035 1 0.999536712157931 hm5C_site_21140 DeepMRMD:1;iRNA_m5C:0.999536712157931 21141 chr4 57881723 57881723 1 + G A COAD 57881714 + 57881694 57881734 41 GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTA GAGGGAGATTCGGATCTATACGGATGCAGACCGTATTTGTA < 41bp 1 0.612762259552058 1 0.6893430352211 experiment 0.774475480895884 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57881714 chr4:57881723 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_19954 0 0 1 0 2 Nucleus 1 0.500231643921092 0.6213139295578 0.999536712157815 hm5C_site_21141 DeepMRMD:0.6213139295578;iRNA_m5C:0.999536712157815 21142 chr5 52204801 52204801 1 + T C COAD 52204817 + 52204797 52204837 41 CTAGTCGGAGCCCCTATGTACATGGGAACAGAGAAGGAGGA CTAGCCGGAGCCCCTATGTACATGGGAACAGAGAAGGAGGA < 41bp 1 0.361471554266018 1 0.441655337810516 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52204817 chr5:52204801 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_19955 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_21142 DeepMRMD:1;iRNA_m5C:0.999536712157815 21143 chr12 67699434 67699434 1 + C A COAD 67699418 + 67699398 67699438 41 AGGGGTTCCTATCCTTGCTTCATTTCTTAGAAAAAACCAGA AGGGGTTCCTATCCTTGCTTCATTTCTTAGAAAAAAACAGA < 41bp 1 0.0277090129547495 1 0.0756645798683167 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAND1 ENSG00000111530 CDS Human protein_coding chr12:67699418 chr12:67699434 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_19957 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21143 DeepMRMD:1;iRNA_m5C:0.999536712157815 21144 chr9 33917140 33917140 1 + G A COAD 33917126 + 33917106 33917146 41 GCCTTCCAATGACAACAGCTCAGATTTGCTTTACGACGACT GCCTTCCAATGACAACAGCTCAGATTTGCTTTACAACGACT < 41bp 1 0.23033070299974 1 0.14328333735466 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917126 chr9:33917140 nonsynonymous SNV 0.999 3 35 hm5C_associated_SNPs_19958 0 0 1 0 0 Cytosol 1 0.500231984929038 1 0.999536030141924 hm5C_site_21144 DeepMRMD:1;iRNA_m5C:0.999536030141924 21145 chr9 33917140 33917140 1 + G A COAD 33917142 + 33917122 33917162 41 AGCTCAGATTTGCTTTACGACGACTTGTATGATGACGACAT AGCTCAGATTTGCTTTACAACGACTTGTATGATGACGACAT < 41bp 1 0.382444215613609 1 0.0456437468528748 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917142 chr9:33917140 nonsynonymous SNV 0.999 3 19 hm5C_associated_SNPs_19959 0 0 1 0 0 Cytosol 1 0.500231643959844 1 0.999536712080312 hm5C_site_21145 DeepMRMD:1;iRNA_m5C:0.999536712080312 21146 chr9 33917140 33917140 1 + G A COAD 33917145 + 33917125 33917165 41 TCAGATTTGCTTTACGACGACTTGTATGATGACGACATTGA TCAGATTTGCTTTACAACGACTTGTATGATGACGACATTGA < 41bp 1 0.16107847098246 1 0.0508410036563873 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917145 chr9:33917140 nonsynonymous SNV 0.999 3 16 hm5C_associated_SNPs_19960 0 0 1 0 0 Cytosol 1 0.500231947617471 1 0.999536104765059 hm5C_site_21146 DeepMRMD:1;iRNA_m5C:0.999536104765059 21147 chr9 33917140 33917140 1 + G A COAD 33917160 + 33917140 33917180 41 GACGACTTGTATGATGACGACATTGATGATGAAGATGAGGA AACGACTTGTATGATGACGACATTGATGATGAAGATGAGGA < 41bp 1 0.0670888269326471 1 0.11705219745636 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917160 chr9:33917140 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_19961 0 0 1 0 0 Cytosol 1 0.500231642103223 1 0.999536715793554 hm5C_site_21147 DeepMRMD:1;iRNA_m5C:0.999536715793554 21148 chr20 60348222 60348222 1 + C T COAD 60348215 + 60348195 60348235 41 TGCCCGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTG TGCCCGAGAACTCGCGCGGGCCCTTCCTGCAGCAGCTCGTG < 41bp 1 0.0404909419219236 1 0.0227009057998657 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348215 chr20:60348222 nonsynonymous SNV 0.783 3 28 hm5C_associated_SNPs_19962 0 0 0 0 0 exosome 1 0.500231644085394 1 0.999536711829212 hm5C_site_21148 DeepMRMD:1;iRNA_m5C:0.999536711829212 21149 chr20 60348222 60348222 1 + C T COAD 60348217 + 60348197 60348237 41 CCCGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTGAG CCCGAGAACTCGCGCGGGCCCTTCCTGCAGCAGCTCGTGAG < 41bp 1 0.211078756713125 1 0.0366529226303101 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348217 chr20:60348222 nonsynonymous SNV 0.783 3 26 hm5C_associated_SNPs_19963 0 0 0 0 0 exosome 1 0.500231643921122 1 0.999536712157757 hm5C_site_21149 DeepMRMD:1;iRNA_m5C:0.999536712157757 21150 chr3 47040856 47040856 1 + C T COAD 47040844 + 47040824 47040864 41 AGAATGAGCGGCTACCTGAGCGGAGCCGCCAGCGCCTCCGG AGAATGAGCGGCTACCTGAGCGGAGCCGCCAGTGCCTCCGG < 41bp 1 0.569731947904992 1 0.895214796066284 experiment 0.860536104190016 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47040844 chr3:47040856 nonsynonymous SNV 0.728 4 33 hm5C_associated_SNPs_19964 0 0 1 0 1 Nucleus 1 0.500231643925673 0.209570407867432 0.999536712148655 hm5C_site_21150 DeepMRMD:0.209570407867432;iRNA_m5C:0.999536712148655 21151 chr3 140140051 140140051 1 + A G COAD 140140054 + 140140034 140140074 41 CTACGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG CTACGACTGTGGACAGAGGCCCGCTGCTCAGGACACCCTGG < 41bp 1 0.175232083784449 1 0.169714838266373 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140140054 chr3:140140051 nonsynonymous SNV 0.966 1 18 hm5C_associated_SNPs_19966 0 0 0 0 2 exosome 1 0.500231634303762 1 0.999536731392476 hm5C_site_21151 DeepMRMD:1;iRNA_m5C:0.999536731392476 21152 chr3 127786412 127786412 1 + T C COAD 127786410 + 127786390 127786430 41 ATGCTGGGCTCCTGTGCATTCTTCTCCAAAACGTGGATTGA ATGCTGGGCTCCTGTGCATTCTCCTCCAAAACGTGGATTGA < 41bp 1 0.546891646401759 1 0.60553777217865 experiment 0.906216707196481 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127786410 chr3:127786412 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_19967 0 0 1 0 1 Ribosome 1 0.500231643921183 0.7889244556427 0.999536712157634 hm5C_site_21152 DeepMRMD:0.7889244556427;iRNA_m5C:0.999536712157634 21153 chrX 135593892 135593892 1 + C T COAD 135593877 + 135593857 135593897 41 AGATGAAAAGGGGCTTGAAGCTGCTGATAAAAAGGCGGAAG AGATGAAAAGGGGCTTGAAGCTGCTGATAAAAAGGTGGAAG < 41bp 1 0.665967996601012 1 0.158446103334427 experiment 0.668064006797976 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593877 chrX:135593892 nonsynonymous SNV 0.517 1 36 hm5C_associated_SNPs_19968 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21153 DeepMRMD:1;iRNA_m5C:0.999536712157815 21154 chrX 135593892 135593892 1 + C T COAD 135593880 + 135593860 135593900 41 TGAAAAGGGGCTTGAAGCTGCTGATAAAAAGGCGGAAGAAG TGAAAAGGGGCTTGAAGCTGCTGATAAAAAGGTGGAAGAAG < 41bp 1 0.286658672541049 1 0.153389781713486 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593880 chrX:135593892 nonsynonymous SNV 0.517 1 33 hm5C_associated_SNPs_19969 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21154 DeepMRMD:1;iRNA_m5C:0.999536712157815 21155 chr14 105177433 105177433 1 + C T COAD 105177427 + 105177407 105177447 41 CCCTCCCAGGGCAGCCACACCGGTGACGCCGACGGCTTCAA CCCTCCCAGGGCAGCCACACCGGTGATGCCGACGGCTTCAA < 41bp 1 0.530847043424777 1 0.48493629693985 experiment 0.938305913150445 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105177427 chr14:105177433 synonymous SNV . 0 27 hm5C_associated_SNPs_19970 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21155 DeepMRMD:1;iRNA_m5C:0.999536712157815 21156 chr1 206653223 206653223 1 + C T COAD 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGATGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG < 41bp 1 0.440732737442841 1 0.269654452800751 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653223 synonymous SNV . 0 4 hm5C_associated_SNPs_19971 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21156 DeepMRMD:1;iRNA_m5C:0.999536712157815 21157 chr10 93605608 93605608 1 + C T COAD 93605612 + 93605592 93605632 41 AGCAGCCCAAAAGGGACGAACACAGCTTTGTGCTTTGTTGC AGCAGCCCAAAAGGGATGAACACAGCTTTGTGCTTTGTTGC < 41bp 1 0.442119271456137 1 0.355812549591064 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93605612 chr10:93605608 stopgain 1.000 1 17 hm5C_associated_SNPs_19972 0 0 1 0 2 Ribosome 1 0.500231643921202 1 0.999536712157595 hm5C_site_21157 DeepMRMD:1;iRNA_m5C:0.999536712157595 21158 chr9 6498129 6498129 1 + C T COAD 6498113 + 6498093 6498133 41 GTTGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACGGTC GTTGAACCTGCTCCTTGGACCTCTGAAGGAATAGAATGGTC < 41bp 1 0.361350553728597 1 0.149571895599365 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498113 chr9:6498129 nonsynonymous SNV 0.988 5 37 hm5C_associated_SNPs_19973 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21158 DeepMRMD:1;iRNA_m5C:0.999536712157815 21159 chr19 18254666 18254666 1 + C A COAD 18254659 + 18254639 18254679 41 CAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC CAGCCCATCTCTCCTGAATACCATCAGACTGGACACAATGC < 41bp 1 0.0130115307366319 1 0.0196704864501953 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18254659 chr19:18254666 nonsynonymous SNV 0.027 1 28 hm5C_associated_SNPs_19975 0 0 1 0 1 Cytosol 1 0.500231632998228 1 0.999536734003543 hm5C_site_21159 DeepMRMD:1;iRNA_m5C:0.999536734003543 21160 chr14 72152247 72152247 1 + G A COAD 72152244 + 72152224 72152264 41 CAGGTGCAGAGTCCCATGACCTCGCGGCTGAATGCTGGAAA CAGGTGCAGAGTCCCATGACCTCACGGCTGAATGCTGGAAA < 41bp 1 0.247230352946394 1 0.0491222441196442 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152244 chr14:72152247 synonymous SNV . 0 24 hm5C_associated_SNPs_19977 0 0 1 0 0 Nucleus 1 0.500231643918348 1 0.999536712163305 hm5C_site_21160 DeepMRMD:1;iRNA_m5C:0.999536712163305 21161 chr17 57771129 57771129 1 + C T COAD 57771132 + 57771112 57771152 41 GCAGGACCCAGTGTTGCCGTCCCTCCCCAGGCACCTTTTGG GCAGGACCCAGTGTTGCTGTCCCTCCCCAGGCACCTTTTGG < 41bp 1 0.0499405840927334 1 0.111594915390015 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57771132 chr17:57771129 synonymous SNV . 0 18 hm5C_associated_SNPs_19979 0 0 1 0 1 Nucleus 1 0.500367607312934 1 0.999264785374133 hm5C_site_21161 DeepMRMD:1;iRNA_m5C:0.999264785374133 21162 chr7 44806214 44806214 1 + G C COAD 44806215 + 44806195 44806235 41 CTGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCC CTGCCACAGGCGTGATGGGCCCCCCCAGCATGTCTGGAGCC < 41bp 1 0.120922598145251 1 0.208457320928574 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806215 chr7:44806214 synonymous SNV . 0 20 hm5C_associated_SNPs_19980 0 0 0 0 1 Cytosol 1 0.500231643886091 1 0.999536712227819 hm5C_site_21162 DeepMRMD:1;iRNA_m5C:0.999536712227819 21163 chr7 44806214 44806214 1 + G C COAD 44806216 + 44806196 44806236 41 TGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCG TGCCACAGGCGTGATGGGCCCCCCCAGCATGTCTGGAGCCG < 41bp 1 0.161019445348141 1 0.163625478744507 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806216 chr7:44806214 synonymous SNV . 0 19 hm5C_associated_SNPs_19981 0 0 0 0 1 Cytosol 1 0.500270154252576 1 0.999459691494847 hm5C_site_21163 DeepMRMD:1;iRNA_m5C:0.999459691494847 21164 chr7 44806214 44806214 1 + G C COAD 44806217 + 44806197 44806237 41 GCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGG GCCACAGGCGTGATGGGCCCCCCCAGCATGTCTGGAGCCGG < 41bp 1 0.472686086802004 1 0.405827581882477 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806217 chr7:44806214 synonymous SNV . 0 18 hm5C_associated_SNPs_19982 0 0 0 0 1 Cytosol 1 0.50023164843866 1 0.99953670312268 hm5C_site_21164 DeepMRMD:1;iRNA_m5C:0.99953670312268 21165 chr7 44806214 44806214 1 + G C COAD 44806218 + 44806198 44806238 41 CCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGG CCACAGGCGTGATGGGCCCCCCCAGCATGTCTGGAGCCGGG < 41bp 1 0.153032429364366 1 0.149999469518661 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806218 chr7:44806214 synonymous SNV . 0 17 hm5C_associated_SNPs_19983 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_21165 DeepMRMD:1;iRNA_m5C:0.999536712157816 21166 chr7 44806214 44806214 1 + G C COAD 44806219 + 44806199 44806239 41 CACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGGG CACAGGCGTGATGGGCCCCCCCAGCATGTCTGGAGCCGGGG < 41bp 1 0.102130940538247 1 0.437460839748383 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806219 chr7:44806214 synonymous SNV . 0 16 hm5C_associated_SNPs_19984 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21166 DeepMRMD:1;iRNA_m5C:0.999536712157815 21167 chr5 33466994 33466994 1 + G A COAD 33466993 + 33466973 33467013 41 TAGGTACGACAACAATTCCACGATGCCAAATTCATGGCAGA TAGGTACGACAACAATTCCACAATGCCAAATTCATGGCAGA < 41bp 1 0.136054061231353 1 0.0644717514514923 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33466993 chr5:33466994 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_19985 0 0 1 0 2 Nucleus 1 0.500231645626576 1 0.999536708746848 hm5C_site_21167 DeepMRMD:1;iRNA_m5C:0.999536708746848 21168 chr19 7528751 7528751 1 + G A COAD 7528733 + 7528713 7528753 41 TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACAGC < 41bp 1 0.333272128946114 1 0.35319995880127 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528733 chr19:7528751 nonsynonymous SNV 0.000 0 39 hm5C_associated_SNPs_19986 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21168 DeepMRMD:1;iRNA_m5C:0.999536712157815 21169 chr16 67575938 67575938 1 + C T COAD 67575945 + 67575925 67575965 41 CCAAGTTGCCTTCCGCAGGCCTGAGACCCCCAGCTCTGGGC CCAAGTTGCCTTCTGCAGGCCTGAGACCCCCAGCTCTGGGC < 41bp 1 0.490613999624236 1 0.0882602334022522 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575945 chr16:67575938 nonsynonymous SNV 0.939 0 14 hm5C_associated_SNPs_19987 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_21169 DeepMRMD:1;iRNA_m5C:0.999536712157816 21170 chr3 10320692 10320692 1 + C T COAD 10320688 + 10320668 10320708 41 GCTGCCTTGCGTGAGAACACCAGTCGCCTCTACAGTCTTTA GCTGCCTTGCGTGAGAACACCAGTTGCCTCTACAGTCTTTA < 41bp 1 0.244116505915154 1 0.0887820422649384 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320688 chr3:10320692 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_19989 0 0 1 0 2 Cytosol 1 0.500237610757541 1 0.999524778484917 hm5C_site_21170 DeepMRMD:1;iRNA_m5C:0.999524778484917 21171 chr2 224824277 224824277 1 + A G COAD 224824275 + 224824255 224824295 41 GAGAAGCCGAACTGGGATTACCATGCAGAAATACAAGCTTT GAGAAGCCGAACTGGGATTACCGTGCAGAAATACAAGCTTT < 41bp 1 0.241934431678783 1 0.254765152931213 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824275 chr2:224824277 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_19990 0 0 1 0 1 Ribosome 1 0.5002316439211 1 0.9995367121578 hm5C_site_21171 DeepMRMD:1;iRNA_m5C:0.9995367121578 21172 chr3 9515070 9515070 1 + C T COAD 9515077 + 9515057 9515097 41 TGCCCATGGTGTGCAGGGATCCTCAGCCCGAACTCCATCTT TGCCCATGGTGTGTAGGGATCCTCAGCCCGAACTCCATCTT < 41bp 1 0.320117761163839 1 0.0334777235984802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9515077 chr3:9515070 stopgain 1.000 0 14 hm5C_associated_SNPs_19991 0 0 1 0 0 Nucleus 1 0.500231643921101 1 0.999536712157798 hm5C_site_21172 DeepMRMD:1;iRNA_m5C:0.999536712157798 21173 chr19 52195901 52195901 1 + G A COAD 52195882 + 52195862 52195902 41 CCTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGC CCTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCAC < 41bp 1 0.301558310792424 1 0.106055915355682 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195882 chr19:52195901 . . 0 40 hm5C_associated_SNPs_19992 0 0 1 0 0 unknown 1 0.500231643214589 1 0.999536713570821 hm5C_site_21173 DeepMRMD:1;iRNA_m5C:0.999536713570821 21174 chr19 52195901 52195901 1 + G A COAD 52195883 + 52195863 52195903 41 CTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCC CTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCACC < 41bp 1 0.403515878987051 1 0.19163390994072 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195883 chr19:52195901 . . 0 39 hm5C_associated_SNPs_19993 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_21174 DeepMRMD:1;iRNA_m5C:0.999536712157815 21175 chr19 52195901 52195901 1 + G A COAD 52195886 + 52195866 52195906 41 GCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCA GCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCACCGCA < 41bp 1 0.0912208567492348 1 0.0221984386444092 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195886 chr19:52195901 . . 0 36 hm5C_associated_SNPs_19994 0 0 1 0 0 unknown 1 0.500231643901729 1 0.999536712196541 hm5C_site_21175 DeepMRMD:1;iRNA_m5C:0.999536712196541 21176 chr19 52195901 52195901 1 + G A COAD 52195887 + 52195867 52195907 41 CACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCAC CACCCACCCGTAGAACCGACCTTGCGGGGCCTTCACCGCAC < 41bp 1 0.364640529908363 1 0.138026893138885 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195887 chr19:52195901 . . 0 35 hm5C_associated_SNPs_19995 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_21176 DeepMRMD:1;iRNA_m5C:0.999536712157815 21177 chr13 20567794 20567794 1 + A G COAD 20567812 + 20567792 20567832 41 GTAAGCTCTGTGAATGATGGCCAATTAGAAAATACTGACGG GTGAGCTCTGTGAATGATGGCCAATTAGAAAATACTGACGG < 41bp 1 0.0828391463963607 1 0.250976622104645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZMYM2 ENSG00000121741 CDS Human protein_coding chr13:20567812 chr13:20567794 synonymous SNV . 0 3 hm5C_associated_SNPs_19996 0 0 1 0 0 Nucleus 1 0.500239756943437 1 0.999520486113125 hm5C_site_21177 DeepMRMD:1;iRNA_m5C:0.999520486113125 21178 chr13 20567794 20567794 1 + A G COAD 20567813 + 20567793 20567833 41 TAAGCTCTGTGAATGATGGCCAATTAGAAAATACTGACGGG TGAGCTCTGTGAATGATGGCCAATTAGAAAATACTGACGGG < 41bp 1 0.0806097167483489 1 0.203718513250351 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZMYM2 ENSG00000121741 CDS Human protein_coding chr13:20567813 chr13:20567794 synonymous SNV . 0 2 hm5C_associated_SNPs_19997 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21178 DeepMRMD:1;iRNA_m5C:0.999536712157815 21179 chr14 102476255 102476255 1 + T C COAD 102476275 + 102476255 102476295 41 TGAACCCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC CGAACCCTGGCTACGCGGGCCGGTCTAACCTTCCTGACAAC < 41bp 1 0.0417893825950733 1 0.379304647445679 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102476275 chr14:102476255 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_19998 0 0 1 0 1 Cytosol 1 0.500231613172532 1 0.999536773654935 hm5C_site_21179 DeepMRMD:1;iRNA_m5C:0.999536773654935 21180 chrX 69353957 69353957 1 + G A COAD 69353952 + 69353932 69353972 41 CTTGGACCTCCTTGAGAAGGCTGCCGAAATGTTATCGCAGC CTTGGACCTCCTTGAGAAGGCTGCCAAAATGTTATCGCAGC < 41bp 1 0.405651149393795 1 0.186804354190826 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69353952 chrX:69353957 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_19999 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_21180 DeepMRMD:1;iRNA_m5C:0.999536712157815 21181 chrX 69353957 69353957 1 + G A COAD 69353956 + 69353936 69353976 41 GACCTCCTTGAGAAGGCTGCCGAAATGTTATCGCAGCTCGA GACCTCCTTGAGAAGGCTGCCAAAATGTTATCGCAGCTCGA < 41bp 1 0.472984460855502 1 0.638658225536346 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69353956 chrX:69353957 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_20000 0 0 1 0 1 Cytosol 1 0.500231643921451 0.722683548927308 0.999536712157097 hm5C_site_21181 DeepMRMD:0.722683548927308;iRNA_m5C:0.999536712157097 21182 chrX 69353957 69353957 1 + G A COAD 69353969 + 69353949 69353989 41 AGGCTGCCGAAATGTTATCGCAGCTCGACTTGTTCAGGTAT AGGCTGCCAAAATGTTATCGCAGCTCGACTTGTTCAGGTAT < 41bp 1 0.301271798320144 1 0.731661677360535 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69353969 chrX:69353957 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_20001 0 0 1 0 1 Cytosol 1 0.500234789271013 0.53667664527893 0.999530421457975 hm5C_site_21182 DeepMRMD:0.53667664527893;iRNA_m5C:0.999530421457975 21183 chr7 142458438 142458438 1 + G A COAD 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATGACAAGATCATTGGGGGCTACAA < 41bp 1 0.67550361703951 1 0.471082925796509 experiment 0.64899276592098 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458438 nonsynonymous SNV 0.308 2 28 hm5C_associated_SNPs_20002 0 0 0 0 1 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_21183 DeepMRMD:1;iRNA_m5C:0.999536712157812 21184 chr7 142458438 142458438 1 + G A COAD 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCATTGGGGGCTACAACTGTGA < 41bp 1 0.176291319187533 1 0.0576739907264709 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458438 nonsynonymous SNV 0.308 2 22 hm5C_associated_SNPs_20003 0 0 0 0 1 Cytosol 1 0.500231643921064 1 0.999536712157873 hm5C_site_21184 DeepMRMD:1;iRNA_m5C:0.999536712157873 21185 chr7 142458438 142458438 1 + G A COAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCATTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.280270419245981 1 0.432224154472351 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458438 nonsynonymous SNV 0.308 2 13 hm5C_associated_SNPs_20004 0 0 0 0 1 Cytosol 1 0.500231644220181 1 0.999536711559638 hm5C_site_21185 DeepMRMD:1;iRNA_m5C:0.999536711559638 21186 chr7 142458438 142458438 1 + G A COAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCATTGGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.150072011116548 1 0.187459796667099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458438 nonsynonymous SNV 0.308 2 10 hm5C_associated_SNPs_20005 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21186 DeepMRMD:1;iRNA_m5C:0.999536712157815 21187 chr7 142458438 142458438 1 + G A COAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCATTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.454449056089084 1 0.368124067783356 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458438 nonsynonymous SNV 0.308 2 7 hm5C_associated_SNPs_20006 0 0 0 0 1 Cytosol 1 0.500231645605341 1 0.999536708789318 hm5C_site_21187 DeepMRMD:1;iRNA_m5C:0.999536708789318 21188 chrX 118109204 118109204 1 + A G COAD 118109186 + 118109166 118109206 41 GGGGGCCGCCGCGGCTGCGGCGGCCACCGAGGTGTGGGACG GGGGGCCGCCGCGGCTGCGGCGGCCACCGAGGTGTGGGGCG < 41bp 1 0.507342088219866 1 0.847744286060333 experiment 0.985315823560269 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109186 chrX:118109204 nonsynonymous SNV 0.993 3 39 hm5C_associated_SNPs_20007 0 0 0 0 0 chromatin 1 0.500231638953762 0.304511427879334 0.999536722092477 hm5C_site_21188 DeepMRMD:0.304511427879334;iRNA_m5C:0.999536722092477 21189 chrX 118109204 118109204 1 + A G COAD 118109189 + 118109169 118109209 41 GGCCGCCGCGGCTGCGGCGGCCACCGAGGTGTGGGACGGCT GGCCGCCGCGGCTGCGGCGGCCACCGAGGTGTGGGGCGGCT < 41bp 1 0.113053204379153 1 0.451101869344711 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109189 chrX:118109204 nonsynonymous SNV 0.993 3 36 hm5C_associated_SNPs_20008 0 0 0 0 0 chromatin 1 0.500231643520045 1 0.999536712959911 hm5C_site_21189 DeepMRMD:1;iRNA_m5C:0.999536712959911 21190 chrX 118109204 118109204 1 + A G COAD 118109190 + 118109170 118109210 41 GCCGCCGCGGCTGCGGCGGCCACCGAGGTGTGGGACGGCTT GCCGCCGCGGCTGCGGCGGCCACCGAGGTGTGGGGCGGCTT < 41bp 1 0.645317706088548 1 0.204632133245468 experiment 0.709364587822904 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109190 chrX:118109204 nonsynonymous SNV 0.993 3 35 hm5C_associated_SNPs_20009 0 0 0 0 0 chromatin 1 0.500231643923901 1 0.999536712152198 hm5C_site_21190 DeepMRMD:1;iRNA_m5C:0.999536712152198 21191 chr11 68177394 68177394 1 + G A COAD 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CACCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT < 41bp 1 0.42944430955734 1 0.640528798103333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177394 nonsynonymous SNV 0.983 4 2 hm5C_associated_SNPs_20010 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.718942403793334 0.999536712157815 hm5C_site_21191 DeepMRMD:0.718942403793334;iRNA_m5C:0.999536712157815 21192 chr19 36594101 36594101 1 + G A COAD 36594096 + 36594076 36594116 41 GCTGAAGAGACCCTGGAGGCCTGGCGCCCACCACGTGAGTG GCTGAAGAGACCCTGGAGGCCTGGCACCCACCACGTGAGTG < 41bp 1 0.418180241328286 1 0.127460151910782 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594096 chr19:36594101 nonsynonymous SNV 0.001 0 26 hm5C_associated_SNPs_20011 0 0 1 0 2 Nucleus 1 0.500231643921935 1 0.99953671215613 hm5C_site_21192 DeepMRMD:1;iRNA_m5C:0.99953671215613 21193 chrX 153688746 153688746 1 + G A COAD 153688731 + 153688711 153688751 41 TGCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGC TGCGGGCCCATGTCACGGGGCCCGTCGAGGACAACACTCGC < 41bp 1 0.0656671454307177 1 0.0524597465991974 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688731 chrX:153688746 nonsynonymous SNV 0.635 0 36 hm5C_associated_SNPs_20012 0 0 0 0 0 Endoplasmic reticulum 1 0.500230998145125 1 0.999538003709751 hm5C_site_21193 DeepMRMD:1;iRNA_m5C:0.999538003709751 21194 chrX 153688746 153688746 1 + G A COAD 153688732 + 153688712 153688752 41 GCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCT GCGGGCCCATGTCACGGGGCCCGTCGAGGACAACACTCGCT < 41bp 1 0.0243321692326784 1 0.0473123490810394 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688732 chrX:153688746 nonsynonymous SNV 0.635 0 35 hm5C_associated_SNPs_20013 0 0 0 0 0 Endoplasmic reticulum 1 0.500231699372015 1 0.999536601255969 hm5C_site_21194 DeepMRMD:1;iRNA_m5C:0.999536601255969 21195 chrX 153688746 153688746 1 + G A COAD 153688733 + 153688713 153688753 41 CGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCTG CGGGCCCATGTCACGGGGCCCGTCGAGGACAACACTCGCTG < 41bp 1 0.233402463874347 1 0.130853980779648 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688733 chrX:153688746 nonsynonymous SNV 0.635 0 34 hm5C_associated_SNPs_20014 0 0 0 0 0 Endoplasmic reticulum 1 0.500231618806447 1 0.999536762387107 hm5C_site_21195 DeepMRMD:1;iRNA_m5C:0.999536762387107 21196 chr1 39823345 39823345 1 + G A COAD 39823346 + 39823326 39823366 41 AACATGCATAAGGGAGGCAGCAGCCCCGAGACCCTTCCCTC AACATGCATAAGGGAGGCAACAGCCCCGAGACCCTTCCCTC < 41bp 1 0.168411749884122 1 0.253716140985489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39823346 chr1:39823345 nonsynonymous SNV 0.768 1 20 hm5C_associated_SNPs_20015 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_21196 DeepMRMD:1;iRNA_m5C:0.999536712157815 21197 chr3 40499433 40499433 1 + C A COAD 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGCCGGGTGGCCTATGTCTCCTTTGGACATCATGCCGGAAA < 41bp 1 0.407076707270807 1 0.0434713363647461 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499433 nonsynonymous SNV 0.995 3 29 hm5C_associated_SNPs_20016 0 0 1 0 1 Ribosome 1 0.500231643920779 1 0.999536712158441 hm5C_site_21197 DeepMRMD:1;iRNA_m5C:0.999536712158441 21198 chr6 155154288 155154288 1 + A G COAD 155154268 + 155154248 155154288 41 GGACGAGACAGAATTCAAAACACTTGGGTTCCCCCTCCTCA GGACGAGACAGAATTCAAAACACTTGGGTTCCCCCTCCTCG < 41bp 1 0.187638469147315 1 0.129660040140152 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155154268 chr6:155154288 nonsynonymous SNV 0.998 1 41 hm5C_associated_SNPs_20017 0 0 1 0 0 Nucleus 1 0.500231643921062 1 0.999536712157876 hm5C_site_21198 DeepMRMD:1;iRNA_m5C:0.999536712157876 21199 chr9 79996932 79996932 1 + C T COAD 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTTGGTTCTTC < 41bp 1 0.438889797791884 1 0.324905395507812 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996932 nonsynonymous SNV 0.991 4 33 hm5C_associated_SNPs_20018 0 0 1 0 2 Nucleus 1 0.500231646623037 1 0.999536706753926 hm5C_site_21199 DeepMRMD:1;iRNA_m5C:0.999536706753926 21200 chr3 66431205 66431205 1 + G A COAD 66431223 - 66431203 66431243 41 TGGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGCCT TGGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGTCT < 41bp 1 0.197798243224544 1 0.137196272611618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66431223 chr3:66431205 nonsynonymous SNV 0.750 0 39 hm5C_associated_SNPs_20019 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21200 DeepMRMD:1;iRNA_m5C:0.999536712157815 21201 chr5 176721107 176721107 1 + G T COAD 176721103 + 176721083 176721123 41 GCAATCAACAGGAATGGCTGCTCAGGCACCCAAAATGTCAG GCAATCAACAGGAATGGCTGCTCATGCACCCAAAATGTCAG < 41bp 1 0.0928946694100544 1 0.0516745448112488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176721103 chr5:176721107 nonsynonymous SNV 0.971 3 25 hm5C_associated_SNPs_20021 0 0 1 0 0 Nucleus 1 0.500229178679428 1 0.999541642641143 hm5C_site_21201 DeepMRMD:1;iRNA_m5C:0.999541642641143 21202 chr9 133760743 133760743 1 + C T COAD 133760729 + 133760709 133760749 41 CTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGATCGCCAGC CTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGATTGCCAGC < 41bp 1 0.0123804574779695 1 0.137393653392792 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760729 chr9:133760743 synonymous SNV . 0 35 hm5C_associated_SNPs_20022 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_21202 DeepMRMD:1;iRNA_m5C:0.999536712157815 21203 chr1 8030968 8030968 1 + G T COAD 8030955 + 8030935 8030975 41 TTGGTTTTCTTTTCACTAGTCTGCTGCTGTGAAGGAGATAC TTGGTTTTCTTTTCACTAGTCTGCTGCTGTGAATGAGATAC < 41bp 1 0.356485133773992 1 0.31263941526413 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030955 chr1:8030968 nonsynonymous SNV 0.937 2 34 hm5C_associated_SNPs_20023 0 0 1 0 2 Ribosome 1 0.500231650945628 1 0.999536698108743 hm5C_site_21203 DeepMRMD:1;iRNA_m5C:0.999536698108743 21204 chr1 8030968 8030968 1 + G T COAD 8030961 + 8030941 8030981 41 TTCTTTTCACTAGTCTGCTGCTGTGAAGGAGATACTGAAGG TTCTTTTCACTAGTCTGCTGCTGTGAATGAGATACTGAAGG < 41bp 1 0.172802364569385 1 0.399786442518234 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030961 chr1:8030968 nonsynonymous SNV 0.937 2 28 hm5C_associated_SNPs_20024 0 0 1 0 2 Ribosome 1 0.500229728043557 1 0.999540543912887 hm5C_site_21204 DeepMRMD:1;iRNA_m5C:0.999540543912887 21205 chr7 130021607 130021607 1 + C T COAD 130021587 + 130021567 130021607 41 CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTC CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTT < 41bp 1 0.638967709505607 1 0.0842543244361877 experiment 0.722064580988787 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021587 chr7:130021607 nonsynonymous SNV 0.260 0 41 hm5C_associated_SNPs_20025 0 0 0 0 2 Endoplasmic reticulum 1 0.500231398876998 1 0.999537202246004 hm5C_site_21205 DeepMRMD:1;iRNA_m5C:0.999537202246004 21206 chr1 33237297 33237297 1 + G A COAD 33237305 + 33237285 33237325 41 TCCTCCAGCTCCGCCAGCCCCAGCTCCTGCTAGTTCCGCCC TCCTCCAGCTCCACCAGCCCCAGCTCCTGCTAGTTCCGCCC < 41bp 1 0.284153886502045 1 0.296270787715912 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33237305 chr1:33237297 synonymous SNV . 0 13 hm5C_associated_SNPs_20027 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21206 DeepMRMD:1;iRNA_m5C:0.999536712157815 21207 chr11 985555 985555 1 + C T COAD 985545 + 985525 985565 41 CCAACGCGAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA CCAACGCGAAGAATGCCGTGCTCTTCGAGGTCATCAGCTTA < 41bp 1 0.0455028880690693 1 0.05155149102211 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985545 chr11:985555 nonsynonymous SNV 0.966 3 31 hm5C_associated_SNPs_20028 0 0 1 0 1 Nucleus 1 0.500231643921494 1 0.999536712157012 hm5C_site_21207 DeepMRMD:1;iRNA_m5C:0.999536712157012 21208 chr3 184106414 184106414 1 + A G COAD 184106407 + 184106387 184106427 41 CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGATGGGCCC CCCACCCCCAGCTGGGGGACCCCATGCGGGCTGATGGGCCC < 41bp 1 0.216934628234135 1 0.242753475904465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184106407 chr3:184106414 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_20029 0 0 1 0 1 nucleus 1 0.500231643920967 1 0.999536712158067 hm5C_site_21208 DeepMRMD:1;iRNA_m5C:0.999536712158067 21209 chr1 168014205 168014205 1 + T C COAD 168014224 + 168014204 168014244 41 TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT TCGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT < 41bp 1 0.423883156094655 1 0.493910104036331 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168014224 chr1:168014205 synonymous SNV . 0 2 hm5C_associated_SNPs_20030 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21209 DeepMRMD:1;iRNA_m5C:0.999536712157815 21210 chr1 16785439 16785439 1 + G A COAD 16785430 + 16785410 16785450 41 GACTTCTGGGAAGGCGCTCCCTCATCTGGGCCAAAGGAAGG GACTTCTGGGAAGGCGCTCCCTCATCTGGACCAAAGGAAGG < 41bp 1 0.551126695369648 1 0.116056144237518 experiment 0.897746609260704 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16785430 chr1:16785439 nonsynonymous SNV 0.152 1 30 hm5C_associated_SNPs_20031 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21210 DeepMRMD:1;iRNA_m5C:0.999536712157815 21211 chr15 93496702 93496702 1 + G A COAD 93496712 + 93496692 93496732 41 TCTTATAGTCGTCCCTTTATCCACCCTCACCTCATGGCAGA TCTTATAGTCATCCCTTTATCCACCCTCACCTCATGGCAGA < 41bp 1 0.184296298709418 1 0.703047275543213 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93496712 chr15:93496702 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_20032 0 0 1 0 0 Nucleus 1 0.500231643975782 0.593905448913574 0.999536712048436 hm5C_site_21211 DeepMRMD:0.593905448913574;iRNA_m5C:0.999536712048436 21212 chr9 135947053 135947053 1 + G C COAD 135947033 + 135947013 135947053 41 CTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGG CTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGC < 41bp 1 0.507094890375413 1 0.266351729631424 experiment 0.985810219249173 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947033 chr9:135947053 nonsynonymous SNV 0.001 1 41 hm5C_associated_SNPs_20033 0 0 1 0 0 exosome 1 0.50023164272036 1 0.999536714559281 hm5C_site_21212 DeepMRMD:1;iRNA_m5C:0.999536714559281 21213 chr9 135947053 135947053 1 + G C COAD 135947035 + 135947015 135947055 41 CCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC CCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGCCC < 41bp 1 0.309110809421368 1 0.0982445478439331 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947035 chr9:135947053 nonsynonymous SNV 0.001 1 39 hm5C_associated_SNPs_20034 0 0 1 0 0 exosome 1 0.500231642679742 1 0.999536714640515 hm5C_site_21213 DeepMRMD:1;iRNA_m5C:0.999536714640515 21214 chr9 135947053 135947053 1 + G C COAD 135947036 + 135947016 135947056 41 CGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC CGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGCCCC < 41bp 1 0.544214676513317 1 0.177856653928757 experiment 0.911570646973366 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947036 chr9:135947053 nonsynonymous SNV 0.001 1 38 hm5C_associated_SNPs_20035 0 0 1 0 0 exosome 1 0.500231573507669 1 0.999536852984663 hm5C_site_21214 DeepMRMD:1;iRNA_m5C:0.999536852984663 21215 chr9 135947053 135947053 1 + G C COAD 135947046 + 135947026 135947066 41 CCCGTGCCGCCCACGGGTGACTCCGGGGCCCCCCCTGTGCC CCCGTGCCGCCCACGGGTGACTCCGGGCCCCCCCCTGTGCC < 41bp 1 0.695486293621079 1 0.636552393436432 experiment 0.609027412757843 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947046 chr9:135947053 nonsynonymous SNV 0.001 1 28 hm5C_associated_SNPs_20036 0 0 1 0 0 exosome 1 0.500222847257237 0.726895213127136 0.999554305485527 hm5C_site_21215 DeepMRMD:0.726895213127136;iRNA_m5C:0.999554305485527 21216 chr5 154173700 154173700 1 + T C COAD 154173686 + 154173666 154173706 41 TTGACTACCAGTTTGGCTACCGAAAGTTTGATGGTGTGGAG TTGACTACCAGTTTGGCTACCGAAAGTTTGATGGCGTGGAG < 41bp 1 0.601695208774468 1 0.727991104125977 experiment 0.796609582451065 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154173686 chr5:154173700 synonymous SNV . 0 35 hm5C_associated_SNPs_20037 0 0 1 0 1 Cytosol 1 0.500231643419253 0.544017791748046 0.999536713161494 hm5C_site_21216 DeepMRMD:0.544017791748046;iRNA_m5C:0.999536713161494 21217 chr1 145115793 145115793 1 + G A COAD 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCAAAGTACTTGAACATGCATTCCACTTATGCCAAACTT < 41bp 1 0.0446615942081931 1 0.0670027732849121 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115793 . . 0 5 hm5C_associated_SNPs_20038 0 0 1 0 1 Cytosol 1 0.500231643920987 1 0.999536712158025 hm5C_site_21217 DeepMRMD:1;iRNA_m5C:0.999536712158025 21218 chrX 149905124 149905124 1 + T C COAD 149905115 + 149905095 149905135 41 GTGCTTACCCAAATGCAGAACTTGTGTTCTTGGAGATCCAC GTGCTTACCCAAATGCAGAACTTGTGTTCCTGGAGATCCAC < 41bp 1 0.173912092264073 1 0.0315197706222534 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905115 chrX:149905124 synonymous SNV . 0 30 hm5C_associated_SNPs_20039 0 0 1 0 1 Ribosome 1 0.500231643927877 1 0.999536712144245 hm5C_site_21218 DeepMRMD:1;iRNA_m5C:0.999536712144245 21219 chr12 132588943 132588943 1 + G A COAD 132588930 + 132588910 132588950 41 CTTGTCCCAGCAGGTCCAGACCCAGAGTCCCACGCAGCCCA CTTGTCCCAGCAGGTCCAGACCCAGAGTCCCACACAGCCCA < 41bp 1 0.206078782412945 1 0.722334325313568 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588930 chr12:132588943 synonymous SNV . 0 34 hm5C_associated_SNPs_20040 0 0 0 0 1 chromatin 1 0.500231643921092 0.555331349372864 0.999536712157816 hm5C_site_21219 DeepMRMD:0.555331349372864;iRNA_m5C:0.999536712157816 21220 chr12 132588943 132588943 1 + G A COAD 132588948 + 132588928 132588968 41 GACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGG GACCCAGAGTCCCACACAGCCCAGTCCGGGGCCGGGGCAGG < 41bp 1 0.243580923227843 1 0.0839950144290924 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588948 chr12:132588943 synonymous SNV . 0 16 hm5C_associated_SNPs_20041 0 0 0 0 1 chromatin 1 0.500231643914629 1 0.999536712170741 hm5C_site_21220 DeepMRMD:1;iRNA_m5C:0.999536712170741 21221 chr12 132588943 132588943 1 + G A COAD 132588949 + 132588929 132588969 41 ACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGGC ACCCAGAGTCCCACACAGCCCAGTCCGGGGCCGGGGCAGGC < 41bp 1 0.221534481130446 1 0.0994040668010712 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588949 chr12:132588943 synonymous SNV . 0 15 hm5C_associated_SNPs_20042 0 0 0 0 1 chromatin 1 0.500231643921073 1 0.999536712157854 hm5C_site_21221 DeepMRMD:1;iRNA_m5C:0.999536712157854 21222 chr12 132588943 132588943 1 + G A COAD 132588953 + 132588933 132588973 41 AGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTG AGAGTCCCACACAGCCCAGTCCGGGGCCGGGGCAGGCCTTG < 41bp 1 0.667925821528192 1 0.882842421531677 experiment 0.664148356943615 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588953 chr12:132588943 synonymous SNV . 0 11 hm5C_associated_SNPs_20043 0 0 0 0 1 chromatin 1 0.500231586262196 0.234315156936646 0.999536827475607 hm5C_site_21222 DeepMRMD:0.234315156936646;iRNA_m5C:0.999536827475607 21223 chr12 132588943 132588943 1 + G A COAD 132588959 + 132588939 132588979 41 CCACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAAT CCACACAGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAAT < 41bp 1 0.561826106632798 1 0.617883265018463 experiment 0.876347786734404 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588959 chr12:132588943 synonymous SNV . 0 5 hm5C_associated_SNPs_20045 0 0 0 0 1 chromatin 1 0.500231643921059 0.764233469963074 0.999536712157881 hm5C_site_21223 DeepMRMD:0.764233469963074;iRNA_m5C:0.999536712157881 21224 chr12 56428840 56428840 1 + G A COAD 56428827 + 56428807 56428847 41 ACCATTGTGGTGGGCCGGCACAGTCCTGCCTACGCCAAAGA ACCATTGTGGTGGGCCGGCACAGTCCTGCCTACACCAAAGA < 41bp 1 0.261635475702981 1 0.42216157913208 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56428827 chr12:56428840 nonsynonymous SNV 0.889 2 34 hm5C_associated_SNPs_20047 0 0 0 0 0 Cytosol 1 0.500231686535978 1 0.999536626928044 hm5C_site_21224 DeepMRMD:1;iRNA_m5C:0.999536626928044 21225 chr11 66063003 66063003 1 + G A COAD 66063004 + 66062984 66063024 41 AGCGGGGGGCCGCTGGGGCGCCGTGGAGAGGACACGGAACC AGCGGGGGGCCGCTGGGGCACCGTGGAGAGGACACGGAACC < 41bp 1 0.408455938527829 1 0.427152454853058 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66063004 chr11:66063003 nonsynonymous SNV 0.874 1 20 hm5C_associated_SNPs_20048 0 0 0 0 0 exosome 1 0.500231643919982 1 0.999536712160037 hm5C_site_21225 DeepMRMD:1;iRNA_m5C:0.999536712160037 21226 chr2 177015088 177015088 1 + G A COAD 177015069 + 177015049 177015089 41 TCTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCGT TCTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCAT < 41bp 1 0.653794314727048 1 0.0510607063770294 experiment 0.692411370545905 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015069 chr2:177015088 . . 0 40 hm5C_associated_SNPs_20049 0 0 1 0 0 unknown 1 0.500231643924405 1 0.999536712151189 hm5C_site_21226 DeepMRMD:1;iRNA_m5C:0.999536712151189 21227 chr2 177015088 177015088 1 + G A COAD 177015070 + 177015050 177015090 41 CTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCGTA CTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCATA < 41bp 1 0.390672250016201 1 0.0624404549598694 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015070 chr2:177015088 . . 0 39 hm5C_associated_SNPs_20050 0 0 1 0 0 unknown 1 0.50023194465401 1 0.999536110691979 hm5C_site_21227 DeepMRMD:1;iRNA_m5C:0.999536110691979 21228 chr2 182785345 182785345 1 + G A COAD 182785364 + 182785344 182785384 41 CGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGG CACTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGG < 41bp 1 0.0492740376875939 1 0.0385544300079346 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182785364 chr2:182785345 nonsynonymous SNV 0.997 0 2 hm5C_associated_SNPs_20051 0 0 1 0 3 Ribosome 1 0.500231643921177 1 0.999536712157646 hm5C_site_21228 DeepMRMD:1;iRNA_m5C:0.999536712157646 21229 chr1 27088723 27088723 1 + G T COAD 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCGTCAGCCTTCCTGAGGACAGATA < 41bp 1 0.210650613557823 1 0.0427128672599792 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088723 stopgain 0.968 1 30 hm5C_associated_SNPs_20052 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21229 DeepMRMD:1;iRNA_m5C:0.999536712157815 21230 chrX 21995188 21995188 1 + C T COAD 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACCTATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA < 41bp 1 0.158922938720189 1 0.402995020151138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995188 synonymous SNV . 0 4 hm5C_associated_SNPs_20053 0 0 1 0 1 Ribosome 1 0.500231643919376 1 0.999536712161249 hm5C_site_21230 DeepMRMD:1;iRNA_m5C:0.999536712161249 21231 chr2 167108307 167108307 1 + T A COAD 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAGAGGCTGAACCTATGATTTCCGATGAGCCAG < 41bp 1 0.446498561866186 1 0.445526033639908 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108307 nonsynonymous SNV 0.993 2 27 hm5C_associated_SNPs_20054 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_21231 DeepMRMD:1;iRNA_m5C:0.999536712157815 21232 chr14 105352959 105352959 1 + G A COAD 105352950 + 105352930 105352970 41 CACCAAGGGCCCCCGGGGAGCCAACTCCCGCCTCTTTCTTC CACCAAGGGCCCCCGGGGAGCCAACTCCCACCTCTTTCTTC < 41bp 1 0.0503775425526721 1 0.0424256026744843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105352950 chr14:105352959 nonsynonymous SNV 0.002 0 30 hm5C_associated_SNPs_20055 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21232 DeepMRMD:1;iRNA_m5C:0.999536712157815 21233 chr19 50334643 50334643 1 + A T COAD 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGTG < 41bp 1 0.236219044138439 1 0.113843023777008 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334643 synonymous SNV . 0 40 hm5C_associated_SNPs_20056 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_21233 DeepMRMD:1;iRNA_m5C:0.999536712157815 21234 chr19 50334643 50334643 1 + A T COAD 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGTGCCCCA < 41bp 1 0.509457399717331 1 0.482234239578247 experiment 0.981085200565339 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334643 synonymous SNV . 0 35 hm5C_associated_SNPs_20057 0 0 1 0 2 chromatin 1 0.500231643921082 1 0.999536712157836 hm5C_site_21234 DeepMRMD:1;iRNA_m5C:0.999536712157836 21235 chr2 181927532 181927532 1 + G A COAD 181927542 + 181927522 181927562 41 TCCTCTGGTTGGAAGCATAGCCACTCAGTATTTGACCAACA TCCTCTGGTTAGAAGCATAGCCACTCAGTATTTGACCAACA < 41bp 1 0.110717410972083 1 0.0249004662036896 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE2E3 ENSG00000170035 CDS Human protein_coding chr2:181927542 chr2:181927532 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_20058 0 0 1 0 1 Cytosol 1 0.500231643922862 1 0.999536712154276 hm5C_site_21235 DeepMRMD:1;iRNA_m5C:0.999536712154276 21236 chr12 132547141 132547141 1 + G A COAD 132547130 + 132547110 132547150 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAG < 41bp 1 0.524842070198912 1 0.597342848777771 experiment 0.950315859602176 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132547130 chr12:132547141 synonymous SNV . 0 32 hm5C_associated_SNPs_20059 0 0 0 0 0 Cytosol 1 0.500231723032512 0.805314302444458 0.999536553934977 hm5C_site_21236 DeepMRMD:0.805314302444458;iRNA_m5C:0.999536553934977 21237 chr2 233697641 233697641 1 + G A COAD 233697652 + 233697632 233697672 41 GCTGCGGATGGAAGAGGAGGCAGCCAGACTCCGGCATGAGG GCTGCGGATAGAAGAGGAGGCAGCCAGACTCCGGCATGAGG < 41bp 1 0.257103495264247 1 0.218017518520355 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233697652 chr2:233697641 nonsynonymous SNV 0.997 2 10 hm5C_associated_SNPs_20060 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21237 DeepMRMD:1;iRNA_m5C:0.999536712157815 21238 chr2 233697641 233697641 1 + G A COAD 233697656 + 233697636 233697676 41 CGGATGGAAGAGGAGGCAGCCAGACTCCGGCATGAGGAAGA CGGATAGAAGAGGAGGCAGCCAGACTCCGGCATGAGGAAGA < 41bp 1 0.30702568023745 1 0.320342749357224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233697656 chr2:233697641 nonsynonymous SNV 0.997 2 6 hm5C_associated_SNPs_20061 0 0 1 0 1 Nucleus 1 0.500231626980596 1 0.999536746038807 hm5C_site_21238 DeepMRMD:1;iRNA_m5C:0.999536746038807 21239 chr7 33014908 33014908 1 + G A COAD 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCA < 41bp 1 0.512518409789494 1 0.779320776462555 experiment 0.974963180421011 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014908 nonsynonymous SNV 1.000 5 41 hm5C_associated_SNPs_20063 0 0 0 0 1 Ribosome 1 0.500231643980107 0.44135844707489 0.999536712039785 hm5C_site_21239 DeepMRMD:0.44135844707489;iRNA_m5C:0.999536712039785 21240 chr7 33014908 33014908 1 + G A COAD 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCAGACC < 41bp 1 0.0738345075734175 1 0.075361430644989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014908 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_20064 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21240 DeepMRMD:1;iRNA_m5C:0.999536712157815 21241 chr4 6925426 6925426 1 + G A COAD 6925415 + 6925395 6925435 41 CGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTGCGCGC CGACCTCATCCCCGAGCGGGCCTTCCAGAGCACCTGCGCGC < 41bp 1 0.0240973994528109 1 0.026388943195343 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:6925415 chr4:6925426 nonsynonymous SNV 0.463 2 32 hm5C_associated_SNPs_20065 0 0 1 0 0 Cytosol 1 0.499085036838718 1 1 hm5C_site_21241 DeepMRMD:1;iRNA_m5C:1 21242 chr6 27101031 27101031 1 + G A COAD 27101032 + 27101012 27101052 41 GGTGCTGGAGTACCTGACCGCCGAGATCCTGGAACTGGCGG GGTGCTGGAGTACCTGACCACCGAGATCCTGGAACTGGCGG < 41bp 1 0.622059404118924 1 0.540245592594147 experiment 0.755881191762153 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101032 chr6:27101031 nonsynonymous SNV 0.919 3 20 hm5C_associated_SNPs_20066 0 0 1 0 0 Ribosome 1 0.500231643921092 0.919508814811706 0.999536712157815 hm5C_site_21242 DeepMRMD:0.919508814811706;iRNA_m5C:0.999536712157815 21243 chr16 78143679 78143679 1 + G A COAD 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTACCATACGGATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.386850363671917 1 0.539565980434418 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143679 nonsynonymous SNV 0.997 0 5 hm5C_associated_SNPs_20067 0 0 1 0 2 Ribosome 1 0.500231643998923 0.920868039131164 0.999536712002154 hm5C_site_21243 DeepMRMD:0.920868039131164;iRNA_m5C:0.999536712002154 21244 chr1 10412707 10412707 1 + C A COAD 10412691 + 10412671 10412711 41 TTTTATCCTTTCTTTTAGGTCGTATTCGGAATAAGCCTGAG TTTTATCCTTTCTTTTAGGTCGTATTCGGAATAAGCATGAG < 41bp 1 0.0485827043081883 1 0.128809720277786 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10412691 chr1:10412707 nonsynonymous SNV 0.989 4 37 hm5C_associated_SNPs_20068 0 0 1 0 2 Cytosol 1 0.500231643921094 1 0.999536712157811 hm5C_site_21244 DeepMRMD:1;iRNA_m5C:0.999536712157811 21245 chr15 25220542 25220542 1 + A G COAD 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGGCTATAGA < 41bp 1 0.66043163382841 1 0.526533186435699 experiment 0.67913673234318 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220542 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_20069 0 0 1 3 1 Cytosol 1 0.500231644210237 0.946933627128602 0.999536711579526 hm5C_site_21245 DeepMRMD:0.946933627128602;iRNA_m5C:0.999536711579526 21246 chr19 10789837 10789837 1 + G A COAD 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCACGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0797976392194437 1 0.0793872177600861 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789837 nonsynonymous SNV 0.804 4 4 hm5C_associated_SNPs_20070 0 0 1 0 2 Cytosol 1 0.500231643921089 1 0.999536712157822 hm5C_site_21246 DeepMRMD:1;iRNA_m5C:0.999536712157822 21247 chr19 10789837 10789837 1 + G A COAD 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCACGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC < 41bp 1 0.0352608069857691 1 0.090662956237793 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789837 nonsynonymous SNV 0.804 4 3 hm5C_associated_SNPs_20071 0 0 1 0 2 Cytosol 1 0.50023164391952 1 0.999536712160961 hm5C_site_21247 DeepMRMD:1;iRNA_m5C:0.999536712160961 21248 chr12 56346661 56346661 1 + A G COAD 56346679 + 56346659 56346699 41 TTAGGTGCTACAGCTAAAGTCATCACCGACCCTGATATCCT TTGGGTGCTACAGCTAAAGTCATCACCGACCCTGATATCCT < 41bp 1 0.432007371463139 1 0.213803559541702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56346679 chr12:56346661 synonymous SNV . 0 3 hm5C_associated_SNPs_20072 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21248 DeepMRMD:1;iRNA_m5C:0.999536712157815 21249 chr8 37978473 37978473 1 + G A COAD 37978454 + 37978434 37978474 41 TTTTTCCTTTCTGCAGTGACCCTTTGTTTTCTGCTCAGCGC TTTTTCCTTTCTGCAGTGACCCTTTGTTTTCTGCTCAGCAC < 41bp 1 0.0569180394715675 1 0.0740212798118591 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ASH2L ENSG00000129691 CDS Human protein_coding chr8:37978454 chr8:37978473 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_20073 0 0 1 0 1 chromatin 1 0.500230498977418 1 0.999539002045164 hm5C_site_21249 DeepMRMD:1;iRNA_m5C:0.999539002045164 21250 chr14 39645301 39645301 1 + C T COAD 39645306 + 39645286 39645326 41 ATCCAAGCCAGATTGCTGGCCCTTTCTGGTCCTGGTGGAGG ATCCAAGCCAGATTGTTGGCCCTTTCTGGTCCTGGTGGAGG < 41bp 1 0.0264727761703018 1 0.0175952613353729 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39645306 chr14:39645301 synonymous SNV . 0 16 hm5C_associated_SNPs_20074 0 0 1 0 2 Nucleus 1 0.500231643921513 1 0.999536712156974 hm5C_site_21250 DeepMRMD:1;iRNA_m5C:0.999536712156974 21251 chr11 125513698 125513698 1 + C T COAD 125513690 + 125513670 125513710 41 TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTT TTTGTTTTCTTTTTTAGGGGCAAAAAGGTCCCGAGTCACTT < 41bp 1 0.361374514515325 1 0.222907096147537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513690 chr11:125513698 nonsynonymous SNV 0.998 0 29 hm5C_associated_SNPs_20075 0 0 1 2 2 Ribosome 1 0.500231643921082 1 0.999536712157836 hm5C_site_21251 DeepMRMD:1;iRNA_m5C:0.999536712157836 21252 chr11 125513698 125513698 1 + C T COAD 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTGT < 41bp 1 0.115764065383215 1 0.228569030761719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513698 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_20077 0 0 1 2 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21252 DeepMRMD:1;iRNA_m5C:0.999536712157815 21253 chr11 125513698 125513698 1 + C T COAD 125513701 + 125513681 125513721 41 TTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGTG TTTTAGGGGCAAAAAGGTCCCGAGTCACTTCAGGTGGTGTG < 41bp 1 0.541165286526444 1 0.527314603328705 experiment 0.917669426947112 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513701 chr11:125513698 nonsynonymous SNV 0.998 0 18 hm5C_associated_SNPs_20078 0 0 1 2 2 Ribosome 1 0.500231643921095 0.94537079334259 0.99953671215781 hm5C_site_21253 DeepMRMD:0.94537079334259;iRNA_m5C:0.99953671215781 21254 chr17 61499220 61499220 1 + C T COAD 61499200 + 61499180 61499220 41 ACGTGAAGGTAGCTCGGACTCTACCTGTGGCTCAGGCATAC ACGTGAAGGTAGCTCGGACTCTACCTGTGGCTCAGGCATAT < 41bp 1 0.338854825256061 1 0.0795470774173737 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61499200 chr17:61499220 synonymous SNV . 0 41 hm5C_associated_SNPs_20079 0 0 1 0 0 Cytosol 1 0.500231665242188 1 0.999536669515623 hm5C_site_21254 DeepMRMD:1;iRNA_m5C:0.999536669515623 21255 chr19 4359976 4359976 1 + G A COAD 4359996 + 4359976 4360016 41 GGCGTCCTCAAGCAGGGGAGCTGAGCCTTCCAGGGCAGGGT AGCGTCCTCAAGCAGGGGAGCTGAGCCTTCCAGGGCAGGGT < 41bp 1 0.305890342393331 1 0.285427510738373 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MPND ENSG00000008382 CDS Human protein_coding chr19:4359996 chr19:4359976 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_20080 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21255 DeepMRMD:1;iRNA_m5C:0.999536712157815 21256 chr1 161199504 161199504 1 + G A COAD 161199507 + 161199487 161199527 41 GGCTCCCTTTGAACCCGGCCCAATCTTTGGTCCCAGCATTT GGCTCCCTTTGAACCCGACCCAATCTTTGGTCCCAGCATTT < 41bp 1 0.0655215692257291 1 0.0799755454063416 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NR1I3 ENSG00000143257 CDS Human protein_coding chr1:161199507 chr1:161199504 nonsynonymous SNV 0.000 2 18 hm5C_associated_SNPs_20081 0 0 1 0 0 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_21256 DeepMRMD:1;iRNA_m5C:0.999536712157815 21257 chr1 100740462 100740462 1 + C A COAD 100740467 + 100740447 100740487 41 ATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATATGG ATAAATTTAACTGAGAGTGGCTGTGTGACTAAGATATATGG < 41bp 1 0.244641294180508 1 0.12459471821785 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100740467 chr1:100740462 nonsynonymous SNV 0.960 2 16 hm5C_associated_SNPs_20083 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21257 DeepMRMD:1;iRNA_m5C:0.999536712157815 21258 chr10 24832556 24832556 1 + A G COAD 24832548 + 24832528 24832568 41 GATCATCATTTTCGATGAGCCCATGGACATCCGGTCTGCCT GATCATCATTTTCGATGAGCCCATGGACGTCCGGTCTGCCT < 41bp 1 0.0962034297152124 1 0.0640764236450195 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24832548 chr10:24832556 nonsynonymous SNV 0.994 4 29 hm5C_associated_SNPs_20084 0 0 0 0 0 Nucleus 1 0.500232417948173 1 0.999535164103653 hm5C_site_21258 DeepMRMD:1;iRNA_m5C:0.999535164103653 21259 chr20 13765812 13765812 1 + T A COAD 13765830 + 13765810 13765850 41 TGTCTCTCCCCGCGGTAGCACCTCGCCCAGAACCCTGAATA TGACTCTCCCCGCGGTAGCACCTCGCCCAGAACCCTGAATA < 41bp 1 0.150368328049277 1 0.294048339128494 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13765830 chr20:13765812 nonsynonymous SNV 0.120 0 3 hm5C_associated_SNPs_20085 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21259 DeepMRMD:1;iRNA_m5C:0.999536712157815 21260 chr6 42044971 42044971 1 + G T COAD 42044969 + 42044949 42044989 41 GTGAAGAAGCCCAAGATCCGCAGGAAGAAGTGAGTTGGAGG GTGAAGAAGCCCAAGATCCGCATGAAGAAGTGAGTTGGAGG < 41bp 1 0.651562720393714 1 0.325345158576965 experiment 0.696874559212572 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TAF8 ENSG00000137413 CDS Human protein_coding chr6:42044969 chr6:42044971 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_20086 0 0 1 3 1 Nucleus 1 0.500231643921201 1 0.999536712157598 hm5C_site_21260 DeepMRMD:1;iRNA_m5C:0.999536712157598 21261 chr19 17450321 17450321 1 + G A COAD 17450306 + 17450286 17450326 41 CCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTC CCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGAATTTC < 41bp 1 0.311478258190804 1 0.80468612909317 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450306 chr19:17450321 nonsynonymous SNV 0.989 4 36 hm5C_associated_SNPs_20087 0 0 1 0 1 Ribosome 1 0.500231643921086 0.39062774181366 0.999536712157829 hm5C_site_21261 DeepMRMD:0.39062774181366;iRNA_m5C:0.999536712157829 21262 chr3 47036645 47036645 1 + C T COAD 47036632 + 47036612 47036652 41 CCCACCGCTGAGCTGCGGCTCTTCCTAGCGCAACGCCTCAG CCCACCGCTGAGCTGCGGCTCTTCCTAGCGCAATGCCTCAG < 41bp 1 0.0845133537774159 1 0.134552121162415 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47036632 chr3:47036645 nonsynonymous SNV 0.649 0 34 hm5C_associated_SNPs_20088 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21262 DeepMRMD:1;iRNA_m5C:0.999536712157815 21263 chr16 50655563 50655563 1 + A G COAD 50655547 + 50655527 50655567 41 GAGAAGACTGACGGGCTGGGCAGCGGAGATGAGAAGAAGAT GAGAAGACTGACGGGCTGGGCAGCGGAGATGAGAAGGAGAT < 41bp 1 0.519550656598775 1 0.570928871631622 experiment 0.960898686802451 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NKD1 ENSG00000140807 CDS Human protein_coding chr16:50655547 chr16:50655563 nonsynonymous SNV 0.868 1 37 hm5C_associated_SNPs_20089 0 0 1 0 2 chromatin 1 0.500231643921093 0.858142256736756 0.999536712157815 hm5C_site_21263 DeepMRMD:0.858142256736756;iRNA_m5C:0.999536712157815 21264 chr1 62914240 62914240 1 + T C COAD 62914259 + 62914239 62914279 41 CTGCCATCATTATACTGAAGCTGAACGAAGTCTTTTGTTTG CCGCCATCATTATACTGAAGCTGAACGAAGTCTTTTGTTTG < 41bp 1 0.303607359404079 1 0.184524178504944 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP1 ENSG00000162607 CDS Human protein_coding chr1:62914259 chr1:62914240 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_20090 0 0 1 0 1 Ribosome 1 0.500231643911119 1 0.999536712177763 hm5C_site_21264 DeepMRMD:1;iRNA_m5C:0.999536712177763 21265 chr6 27101045 27101045 1 + A G COAD 27101032 + 27101012 27101052 41 GGTGCTGGAGTACCTGACCGCCGAGATCCTGGAACTGGCGG GGTGCTGGAGTACCTGACCGCCGAGATCCTGGAGCTGGCGG < 41bp 1 0.641241907809248 1 0.783063769340515 experiment 0.717516184381505 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101032 chr6:27101045 synonymous SNV . 0 34 hm5C_associated_SNPs_20091 0 0 1 0 0 Ribosome 1 0.500231643921092 0.43387246131897 0.999536712157815 hm5C_site_21265 DeepMRMD:0.43387246131897;iRNA_m5C:0.999536712157815 21266 chr6 27101045 27101045 1 + A G COAD 27101054 + 27101034 27101074 41 GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACAA GAGATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACAACAA < 41bp 1 0.615606766273516 1 0.589400410652161 experiment 0.768786467452969 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101054 chr6:27101045 synonymous SNV . 0 12 hm5C_associated_SNPs_20092 0 0 1 0 0 Ribosome 1 0.500231644209011 0.821199178695678 0.999536711581978 hm5C_site_21266 DeepMRMD:0.821199178695678;iRNA_m5C:0.999536711581978 21267 chr6 27101045 27101045 1 + A G COAD 27101062 + 27101042 27101082 41 GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC GGAGCTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC < 41bp 1 0.361475252954715 1 0.284608513116837 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101062 chr6:27101045 synonymous SNV . 0 4 hm5C_associated_SNPs_20093 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21267 DeepMRMD:1;iRNA_m5C:0.999536712157815 21268 chr6 27101045 27101045 1 + A G COAD 27101063 + 27101043 27101083 41 GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG GAGCTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG < 41bp 1 0.410403534873575 1 0.156366467475891 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101063 chr6:27101045 synonymous SNV . 0 3 hm5C_associated_SNPs_20094 0 0 1 0 0 Ribosome 1 0.50023164391252 1 0.999536712174961 hm5C_site_21268 DeepMRMD:1;iRNA_m5C:0.999536712174961 21269 chr6 125550342 125550342 1 + G A COAD 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GAGATAAAACAAAAACTCAGCATGAACCTGATGAATGAATT < 41bp 1 0.28502503772 1 0.128740251064301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550342 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_20095 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21269 DeepMRMD:1;iRNA_m5C:0.999536712157815 21270 chr3 184717501 184717501 1 + A G COAD 184717491 + 184717471 184717511 41 CTTCGTTTTGCAGCTGTGGCCATTTGTATCACTCATTCTGC CTTCGTTTTGCAGCTGTGGCCATTTGTATCGCTCATTCTGC < 41bp 1 0.0337659602139439 1 0.0345844924449921 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184717491 chr3:184717501 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_20096 0 0 1 0 1 chromatin 1 0.500254848033263 1 0.999490303933475 hm5C_site_21270 DeepMRMD:1;iRNA_m5C:0.999490303933475 21271 chr4 3495183 3495183 1 + G A COAD 3495163 + 3495143 3495183 41 CAGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCG CAGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCA < 41bp 1 0.0247385978018227 1 0.0385319292545319 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495163 chr4:3495183 synonymous SNV . 0 41 hm5C_associated_SNPs_20097 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21271 DeepMRMD:1;iRNA_m5C:0.999536712157815 21272 chr4 3495183 3495183 1 + G A COAD 3495164 + 3495144 3495184 41 AGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCGG AGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCAG < 41bp 1 0.165603168744008 1 0.141847401857376 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495164 chr4:3495183 synonymous SNV . 0 40 hm5C_associated_SNPs_20098 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_21272 DeepMRMD:1;iRNA_m5C:0.999536712157816 21273 chr7 45108055 45108055 1 + G T COAD 45108058 + 45108038 45108078 41 TCAGCCCAGGACCCAGGGATCTCCCCCAGCCAGAGTCTGTG TCAGCCCAGGACCCAGGTATCTCCCCCAGCCAGAGTCTGTG < 41bp 1 0.344305360054767 1 0.0766543447971344 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45108058 chr7:45108055 synonymous SNV . 0 18 hm5C_associated_SNPs_20099 0 0 0 0 1 Ribosome 1 0.500231643921162 1 0.999536712157677 hm5C_site_21273 DeepMRMD:1;iRNA_m5C:0.999536712157677 21274 chr14 104642766 104642766 1 + C A COAD 104642772 + 104642752 104642792 41 CCTCCCCCGGAAACCGAGGACTGCCTCTGCCACCACCCGTG CCTCCCCCGGAAACAGAGGACTGCCTCTGCCACCACCCGTG < 41bp 1 0.198164749864914 1 0.0645419359207153 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642772 chr14:104642766 nonsynonymous SNV 0.008 1 15 hm5C_associated_SNPs_20100 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_21274 DeepMRMD:1;iRNA_m5C:0.999536712157815 21275 chr4 178262720 178262720 1 + C T COAD 178262712 + 178262692 178262732 41 TCAGTGCCACTGCAGAATAACTGTGTGCCGCTTTGGGGACA TCAGTGCCACTGCAGAATAACTGTGTGCTGCTTTGGGGACA < 41bp 1 0.547703094311034 1 0.0611368715763092 experiment 0.904593811377933 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262712 chr4:178262720 nonsynonymous SNV 0.981 3 29 hm5C_associated_SNPs_20101 0 0 1 0 2 chromatin 1 0.500231661027847 1 0.999536677944306 hm5C_site_21275 DeepMRMD:1;iRNA_m5C:0.999536677944306 21276 chr4 178262720 178262720 1 + C T COAD 178262719 + 178262699 178262739 41 CACTGCAGAATAACTGTGTGCCGCTTTGGGGACAATAACAG CACTGCAGAATAACTGTGTGCTGCTTTGGGGACAATAACAG < 41bp 1 0.401994781834639 1 0.226697027683258 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262719 chr4:178262720 nonsynonymous SNV 0.981 3 22 hm5C_associated_SNPs_20102 0 0 1 0 2 chromatin 1 0.500231643922445 1 0.999536712155111 hm5C_site_21276 DeepMRMD:1;iRNA_m5C:0.999536712155111 21277 chr4 178262720 178262720 1 + C T COAD 178262731 + 178262711 178262751 41 ACTGTGTGCCGCTTTGGGGACAATAACAGAATGACATATTT ACTGTGTGCTGCTTTGGGGACAATAACAGAATGACATATTT < 41bp 1 0.381544393502922 1 0.197655230760574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262731 chr4:178262720 nonsynonymous SNV 0.981 3 10 hm5C_associated_SNPs_20103 0 0 1 0 2 chromatin 1 0.500232369389177 1 0.999535261221645 hm5C_site_21277 DeepMRMD:1;iRNA_m5C:0.999535261221645 21278 chr19 10561295 10561295 1 + G A COAD 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCAGCCCCACCCCTGTCTGCAAGGCCA < 41bp 1 0.0462046535995386 1 0.106450408697128 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561295 nonsynonymous SNV 0.801 0 17 hm5C_associated_SNPs_20104 0 0 0 0 2 chromatin 1 0.500231643920953 1 0.999536712158094 hm5C_site_21278 DeepMRMD:1;iRNA_m5C:0.999536712158094 21279 chr7 33014891 33014891 1 + G A COAD 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAACCCCCGAGTTGCCCTCG < 41bp 1 0.283067605328425 1 0.41394716501236 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014891 synonymous SNV . 0 24 hm5C_associated_SNPs_20105 0 0 1 0 2 Ribosome 1 0.500231588648994 1 0.999536822702011 hm5C_site_21279 DeepMRMD:1;iRNA_m5C:0.999536822702011 21280 chr7 33014891 33014891 1 + G A COAD 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAACCCCCGAGTTGCCCTCGGACC < 41bp 1 0.10022018041456 1 0.195621609687805 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014891 synonymous SNV . 0 20 hm5C_associated_SNPs_20106 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21280 DeepMRMD:1;iRNA_m5C:0.999536712157815 21281 chr9 131669674 131669674 1 + G A COAD 131669678 + 131669658 131669698 41 GGGCAGCCCCTGGCCCGGAGCCCACCTACCCCAACTCCACC GGGCAGCCCCTGGCCCAGAGCCCACCTACCCCAACTCCACC < 41bp 1 0.106817164591472 1 0.206969290971756 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC8A ENSG00000136802 CDS Human protein_coding chr9:131669678 chr9:131669674 synonymous SNV . 0 17 hm5C_associated_SNPs_20108 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_21281 DeepMRMD:1;iRNA_m5C:0.999536712157815 21282 chr20 6750999 6750999 1 + C A COAD 6750992 + 6750972 6751012 41 CCCACCCCCAGCAGGGACGCCGTGGTGCCCCCCTACATGCT CCCACCCCCAGCAGGGACGCCGTGGTGACCCCCTACATGCT < 41bp 1 0.519831766254113 1 0.429505467414856 experiment 0.960336467491774 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMP2 ENSG00000125845 CDS Human protein_coding chr20:6750992 chr20:6750999 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_20109 0 0 0 0 0 Ribosome 1 0.50023164391901 1 0.99953671216198 hm5C_site_21282 DeepMRMD:1;iRNA_m5C:0.99953671216198 21283 chr21 34925023 34925023 1 + T C COAD 34925019 + 34924999 34925039 41 CCCAACAATGCCACCGTTGCCACCTGAGGAGCCACCAATGA CCCAACAATGCCACCGTTGCCACCCGAGGAGCCACCAATGA < 41bp 1 0.515258328447574 1 0.164766639471054 experiment 0.969483343104851 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SON ENSG00000159140 CDS Human protein_coding chr21:34925019 chr21:34925023 synonymous SNV . 0 25 hm5C_associated_SNPs_20110 0 0 1 0 0 Nucleus 1 0.500231643921346 1 0.999536712157307 hm5C_site_21283 DeepMRMD:1;iRNA_m5C:0.999536712157307 21284 chr14 105959056 105959056 1 + C T COAD 105959051 + 105959031 105959071 41 TGGTGTCCAGTCAGCAGGAGCAGTGCGCCCTCCTGAGCAAG TGGTGTCCAGTCAGCAGGAGCAGTGTGCCCTCCTGAGCAAG < 41bp 1 0.360920667031728 1 0.253744125366211 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105959051 chr14:105959056 synonymous SNV . 0 26 hm5C_associated_SNPs_20111 0 0 1 0 1 Ribosome 1 0.500231643920709 1 0.999536712158582 hm5C_site_21284 DeepMRMD:1;iRNA_m5C:0.999536712158582 21285 chrX 100088459 100088459 1 + C T COAD 100088446 + 100088426 100088466 41 AACATGGGGGCGGTTGTCCCCCAGGGATCCAGACAGGTATG AACATGGGGGCGGTTGTCCCCCAGGGATCCAGATAGGTATG < 41bp 1 0.604565912131732 1 0.39952278137207 experiment 0.790868175736537 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100088446 chrX:100088459 stopgain 0.999 1 34 hm5C_associated_SNPs_20112 0 0 1 0 1 Nucleus 1 0.5002316439211 1 0.999536712157801 hm5C_site_21285 DeepMRMD:1;iRNA_m5C:0.999536712157801 21286 chr11 123989023 123989023 1 + T C COAD 123989020 + 123989000 123989040 41 CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATGTGC CCAACCTGGGTCGAAGGCGGCAGCCACCCTGAAGTATGTGC < 41bp 1 0.313502829874653 1 0.44953727722168 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VWA5A ENSG00000110002 CDS Human protein_coding chr11:123989020 chr11:123989023 nonsynonymous SNV 0.857 1 24 hm5C_associated_SNPs_20113 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21286 DeepMRMD:1;iRNA_m5C:0.999536712157815 21287 chr15 31197375 31197375 1 + T C COAD 31197363 + 31197343 31197383 41 GTCCAGAAAATACGTAAAGGCTAAAAAATCAATAGATAAGG GTCCAGAAAATACGTAAAGGCTAAAAAATCAACAGATAAGG < 41bp 1 0.421404099180317 1 0.164638936519623 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAN1 ENSG00000198690 CDS Human protein_coding chr15:31197363 chr15:31197375 nonsynonymous SNV 0.662 0 33 hm5C_associated_SNPs_20114 0 0 1 0 0 Cytosol 1 0.500231645259817 1 0.999536709480367 hm5C_site_21287 DeepMRMD:1;iRNA_m5C:0.999536709480367 21288 chr16 30779680 30779680 1 + G A COAD 30779681 + 30779661 30779701 41 CAGGGCCCTTCCTCCCGGGGCCGAGAACCTGAGGCCAGGCC CAGGGCCCTTCCTCCCGGGACCGAGAACCTGAGGCCAGGCC < 41bp 1 0.177987955408409 1 0.100097835063934 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30779681 chr16:30779680 nonsynonymous SNV 0.980 0 20 hm5C_associated_SNPs_20115 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21288 DeepMRMD:1;iRNA_m5C:0.999536712157815 21289 chr1 109811555 109811555 1 + C T COAD 109811544 + 109811524 109811564 41 CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGG CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCTGCTACGAGG < 41bp 1 0.0558088918844443 1 0.0892964005470276 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811544 chr1:109811555 nonsynonymous SNV 0.997 2 32 hm5C_associated_SNPs_20116 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_21289 DeepMRMD:1;iRNA_m5C:0.999536712157815 21290 chr1 109811555 109811555 1 + C T COAD 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGT < 41bp 1 0.105212528405906 1 0.0899826288223267 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811555 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_20117 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_21290 DeepMRMD:1;iRNA_m5C:0.999536712157815 21291 chr1 109811555 109811555 1 + C T COAD 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGTG < 41bp 1 0.100267921796298 1 0.231831401586533 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811555 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_20118 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643861379 1 0.999536712277242 hm5C_site_21291 DeepMRMD:1;iRNA_m5C:0.999536712277242 21292 chr1 109811555 109811555 1 + C T COAD 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGTGG < 41bp 1 0.308997171225815 1 0.169762581586838 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811555 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_20119 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_21292 DeepMRMD:1;iRNA_m5C:0.999536712157815 21293 chr19 42392911 42392911 1 + C T COAD 42392901 + 42392881 42392921 41 CCCACCTCATGGCCCTCCTGCAGCACGTGGCCCTGCAGTTT CCCACCTCATGGCCCTCCTGCAGCACGTGGTCCTGCAGTTT < 41bp 1 0.50825043707905 1 0.235457986593246 experiment 0.983499125841899 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392901 chr19:42392911 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_20120 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_21293 DeepMRMD:1;iRNA_m5C:0.999536712157817 21294 chr11 65824768 65824768 1 + T G COAD 65824781 + 65824761 65824801 41 GCCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC GCCCCACGCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC < 41bp 1 0.415390194365648 1 0.0558830797672272 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824781 chr11:65824768 synonymous SNV . 0 8 hm5C_associated_SNPs_20121 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_21294 DeepMRMD:1;iRNA_m5C:0.999536712157815 21295 chr11 65824768 65824768 1 + T G COAD 65824782 + 65824762 65824802 41 CCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC CCCCACGCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC < 41bp 1 0.344607770927409 1 0.145737648010254 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824782 chr11:65824768 synonymous SNV . 0 7 hm5C_associated_SNPs_20122 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21295 DeepMRMD:1;iRNA_m5C:0.999536712157815 21296 chr1 44458013 44458013 1 + C T COAD 44458016 + 44457996 44458036 41 TCTTGCGCCAGGAGCTCCGGCAGTTGCTCCAGGGTCTCCGC TCTTGCGCCAGGAGCTCTGGCAGTTGCTCCAGGGTCTCCGC < 41bp 1 0.47122466640723 1 0.404122412204742 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC24 ENSG00000159214 CDS Human protein_coding chr1:44458016 chr1:44458013 nonsynonymous SNV 0.989 1 18 hm5C_associated_SNPs_20123 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_21296 DeepMRMD:1;iRNA_m5C:0.999536712157815 21297 chr11 75279852 75279852 1 + T C COAD 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATACCGTGGGCGTCATGATGATGCACCGGACAGG < 41bp 1 0.469512019866871 1 0.127346634864807 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279852 synonymous SNV . 0 18 hm5C_associated_SNPs_20124 0 0 1 0 2 Ribosome 1 0.500231587021089 1 0.999536825957822 hm5C_site_21297 DeepMRMD:1;iRNA_m5C:0.999536825957822 21298 chr6 31637105 31637105 1 + A G COAD 31637092 + 31637072 31637112 41 CTGCTGAGTCTGGCTGTCTCCCAGGCCTTTCAGACATCCCA CTGCTGAGTCTGGCTGTCTCCCAGGCCTTTCAGGCATCCCA < 41bp 1 0.533231828928572 1 0.555281460285187 experiment 0.933536342142856 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CSNK2B ENSG00000204435;ENSG00000263020 CDS Human other chr6:31637092 chr6:31637105 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_20125 0 0 1 0 1 Ribosome 1 0.500231643915956 0.889437079429626 0.999536712168089 hm5C_site_21298 DeepMRMD:0.889437079429626;iRNA_m5C:0.999536712168089 21299 chr11 68204387 68204387 1 + C T COAD 68204395 + 68204375 68204415 41 AGTTCCGGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG AGTTCCGGTGTGTGAGCGGCCAGTGTGTCCTCATCAAACAG < 41bp 1 0.386269423243584 1 0.384737610816956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204395 chr11:68204387 nonsynonymous SNV 0.961 1 13 hm5C_associated_SNPs_20126 0 0 0 0 2 Endoplasmic reticulum 1 0.500230371643925 1 0.999539256712151 hm5C_site_21299 DeepMRMD:1;iRNA_m5C:0.999539256712151 21300 chr10 94822668 94822668 1 + C T COAD 94822648 + 94822628 94822668 41 CGCGCATCCTGCTGGGGTTGCGGCTGGACGAGGCGCAGTGC CGCGCATCCTGCTGGGGTTGCGGCTGGACGAGGCGCAGTGT < 41bp 1 0.649606609114018 1 0.458012402057648 experiment 0.700786781771964 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822648 chr10:94822668 synonymous SNV . 0 41 hm5C_associated_SNPs_20128 0 0 0 0 1 exosome 1 0.500232473421528 1 0.999535053156944 hm5C_site_21300 DeepMRMD:1;iRNA_m5C:0.999535053156944 21301 chr1 156756687 156756687 1 + T C COAD 156756700 + 156756680 156756720 41 ACAGTGATGAGGAAGTAGCCCCCGAAAACTTTTTCTCCCTC ACAGTGACGAGGAAGTAGCCCCCGAAAACTTTTTCTCCCTC < 41bp 1 0.640488643511176 1 0.304850518703461 experiment 0.719022712977648 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756700 chr1:156756687 synonymous SNV . 0 8 hm5C_associated_SNPs_20131 0 0 1 0 0 Ribosome 1 0.50023164392103 1 0.999536712157939 hm5C_site_21301 DeepMRMD:1;iRNA_m5C:0.999536712157939 21302 chr3 125694419 125694419 1 + C A COAD 125694437 + 125694417 125694457 41 CCCTGTCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTCT CCATGTCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTCT < 41bp 1 0.124275320938792 1 0.0964028537273407 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125694437 chr3:125694419 nonsynonymous SNV 0.094 0 3 hm5C_associated_SNPs_20132 0 0 0 0 0 exosome 1 0.500231643921089 1 0.999536712157823 hm5C_site_21302 DeepMRMD:1;iRNA_m5C:0.999536712157823 21303 chr6 168352328 168352328 1 + C T COAD 168352327 + 168352307 168352347 41 TGGTATGAGAAGGAGAAGGCCCGCCTGGAGGAGGAGCGGGA TGGTATGAGAAGGAGAAGGCCTGCCTGGAGGAGGAGCGGGA < 41bp 1 0.269407103336697 1 0.363610446453094 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout AFDN ENSG00000130396 CDS Human protein_coding chr6:168352327 chr6:168352328 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_20133 0 0 1 0 0 unknown 1 0.500231643935853 1 0.999536712128294 hm5C_site_21303 DeepMRMD:1;iRNA_m5C:0.999536712128294 21304 chrX 152770762 152770762 1 + T C COAD 152770746 + 152770726 152770766 41 CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCC CTGACACCACGCTGCTGGACCTGCAGAACAACGACACCTCC < 41bp 1 0.695450233787387 1 0.473468989133835 experiment 0.609099532425225 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BGN ENSG00000182492 CDS Human protein_coding chrX:152770746 chrX:152770762 nonsynonymous SNV 0.675 4 37 hm5C_associated_SNPs_20134 0 0 0 0 2 Cytosol 1 0.500231643786058 1 0.999536712427883 hm5C_site_21304 DeepMRMD:1;iRNA_m5C:0.999536712427883 21305 chr1 203816474 203816474 1 + G A COAD 203816460 + 203816440 203816480 41 TCTACTTCAGGAGCAAGAAGCTCCTCCACTATCCGTATCAA TCTACTTCAGGAGCAAGAAGCTCCTCCACTATCCATATCAA < 41bp 1 0.289593102992581 1 0.357264488935471 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203816460 chr1:203816474 nonsynonymous SNV 0.617 0 35 hm5C_associated_SNPs_20135 0 0 1 0 0 Nucleus 1 0.500231641942581 1 0.999536716114839 hm5C_site_21305 DeepMRMD:1;iRNA_m5C:0.999536716114839 21306 chr6 147635041 147635041 1 + C T COAD 147635039 + 147635019 147635059 41 GATATCCTATATTTGAAAATCCCTACCCTTTGAGTATACAT GATATCCTATATTTGAAAATCCTTACCCTTTGAGTATACAT < 41bp 1 0.025806190846426 1 0.0763802528381348 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147635039 chr6:147635041 synonymous SNV . 0 23 hm5C_associated_SNPs_20136 0 0 1 0 1 Nucleus 1 0.500231643920941 1 0.999536712158119 hm5C_site_21306 DeepMRMD:1;iRNA_m5C:0.999536712158119 21307 chr10 118314737 118314737 1 + C T COAD 118314721 + 118314701 118314741 41 GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATT GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCTGATT < 41bp 1 0.231574197459371 1 0.0612398982048035 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314721 chr10:118314737 stopgain 0.993 1 37 hm5C_associated_SNPs_20137 0 0 0 0 1 unknown 1 0.500231643978552 1 0.999536712042896 hm5C_site_21307 DeepMRMD:1;iRNA_m5C:0.999536712042896 21308 chr10 118314737 118314737 1 + C T COAD 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCTGATTGG < 41bp 1 0.458665353941323 1 0.0710181295871735 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314737 stopgain 0.993 1 35 hm5C_associated_SNPs_20138 0 0 0 0 1 unknown 1 0.500231643921097 1 0.999536712157806 hm5C_site_21308 DeepMRMD:1;iRNA_m5C:0.999536712157806 21309 chr10 118314737 118314737 1 + C T COAD 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTGCTTTCAGGGCACACCTGAATTAGTCTGATTGGAC < 41bp 1 0.251900175645672 1 0.184662699699402 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314737 stopgain 0.993 1 33 hm5C_associated_SNPs_20139 0 0 0 0 1 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_21309 DeepMRMD:1;iRNA_m5C:0.999536712157812 21310 chr10 118314737 118314737 1 + C T COAD 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGGCACACCTGAATTAGTCTGATTGGACCCCAGCGATGC < 41bp 1 0.635927955128509 1 0.2503562271595 experiment 0.728144089742982 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314737 stopgain 0.993 1 22 hm5C_associated_SNPs_20141 0 0 0 0 1 unknown 1 0.500231642594555 1 0.99953671481089 hm5C_site_21310 DeepMRMD:1;iRNA_m5C:0.99953671481089 21311 chr10 118314737 118314737 1 + C T COAD 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCTGATTGGACCCCAGCGATGCCAAATTTGT < 41bp 1 0.516559346130805 1 0.0908315181732178 experiment 0.966881307738389 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314737 stopgain 0.993 1 13 hm5C_associated_SNPs_20142 0 0 0 0 1 unknown 1 0.500231643921085 1 0.999536712157829 hm5C_site_21311 DeepMRMD:1;iRNA_m5C:0.999536712157829 21312 chr10 118314737 118314737 1 + C T COAD 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCTGATTGGACCCCAGCGATGCCAAATTTGTG < 41bp 1 0.129352519341746 1 0.189301609992981 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314737 stopgain 0.993 1 12 hm5C_associated_SNPs_20143 0 0 0 0 1 unknown 1 0.500231643920665 1 0.999536712158669 hm5C_site_21312 DeepMRMD:1;iRNA_m5C:0.999536712158669 21313 chr10 118314737 118314737 1 + C T COAD 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCTGATTGGACCCCAGCGATGCCAAATTTGTGG < 41bp 1 0.30352049788328 1 0.239408224821091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314737 stopgain 0.993 1 11 hm5C_associated_SNPs_20144 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_21313 DeepMRMD:1;iRNA_m5C:0.999536712157815 21314 chr10 118314737 118314737 1 + C T COAD 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCTGATTGGACCCCAGCGATGCCAAATTTGTGGATGT < 41bp 1 0.282685771450206 1 0.120546668767929 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314737 stopgain 0.993 1 7 hm5C_associated_SNPs_20146 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_21314 DeepMRMD:1;iRNA_m5C:0.999536712157815 21315 chr10 118314737 118314737 1 + C T COAD 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CTGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC < 41bp 1 0.321077228458256 1 0.0481625199317932 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314737 stopgain 0.993 1 2 hm5C_associated_SNPs_20147 0 0 0 0 1 unknown 1 0.500231643921154 1 0.999536712157692 hm5C_site_21315 DeepMRMD:1;iRNA_m5C:0.999536712157692 21316 chr10 118314737 118314737 1 + C T COAD 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA TGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA < 41bp 1 0.405699278533519 1 0.247578114271164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314737 stopgain 0.993 1 1 hm5C_associated_SNPs_20148 0 0 0 0 1 unknown 1 0.500231643921179 1 0.999536712157641 hm5C_site_21316 DeepMRMD:1;iRNA_m5C:0.999536712157641 21317 chr12 110032874 110032874 1 + C T COAD 110032880 + 110032860 110032900 41 CTGAATGCCCTCGGCGTGGGCCACGCCTCTCTGGACCAGCT CTGAATGCCCTCGGTGTGGGCCACGCCTCTCTGGACCAGCT < 41bp 1 0.185917716503921 1 0.107460975646973 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVK ENSG00000110921 CDS Human protein_coding chr12:110032880 chr12:110032874 synonymous SNV . 0 15 hm5C_associated_SNPs_20149 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_21317 DeepMRMD:1;iRNA_m5C:0.999536712157813 21318 chr7 5338891 5338891 1 + G A COAD 5338900 + 5338880 5338920 41 TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCCGACATG TGCACCGCTACATGGTGGCGCGGGTGATCTGGGCCGACATG < 41bp 1 0.490616217932603 1 0.298700273036957 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338900 chr7:5338891 nonsynonymous SNV 0.941 1 12 hm5C_associated_SNPs_20150 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642437392 1 0.999536715125216 hm5C_site_21318 DeepMRMD:1;iRNA_m5C:0.999536715125216 21319 chr11 13399894 13399894 1 + G T COAD 13399900 + 13399880 13399920 41 GTAGGTGGCCCAAAGAGGACCCACCCCACTGTTCCAGGGAT GTAGGTGGCCCAAATAGGACCCACCCCACTGTTCCAGGGAT < 41bp 1 0.088800568471209 1 0.120292842388153 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARNTL ENSG00000133794 CDS Human protein_coding chr11:13399900 chr11:13399894 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_20151 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21319 DeepMRMD:1;iRNA_m5C:0.999536712157815 21320 chr16 16235115 16235115 1 + G A COAD 16235100 + 16235080 16235120 41 ACCTCCTGCAGCAGAGAGGTCTTTTCTACAGCATGGCCAAA ACCTCCTGCAGCAGAGAGGTCTTTTCTACAGCATGACCAAA < 41bp 1 0.0253618596758372 1 0.0358085334300995 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16235100 chr16:16235115 nonsynonymous SNV 0.999 5 36 hm5C_associated_SNPs_20152 0 0 1 0 0 Mitochondrion 1 0.500232486325838 1 0.999535027348324 hm5C_site_21320 DeepMRMD:1;iRNA_m5C:0.999535027348324 21321 chr4 6596420 6596420 1 + C T COAD 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGTGTG < 41bp 1 0.14380516840654 1 0.0302923619747162 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596420 nonsynonymous SNV 0.016 1 38 hm5C_associated_SNPs_20153 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164395641 1 0.999536712087181 hm5C_site_21321 DeepMRMD:1;iRNA_m5C:0.999536712087181 21322 chr11 6414487 6414487 1 + G A COAD 6414500 + 6414480 6414520 41 GGTCTCCGCCTCATCTCTCTCAATATGAATTTTTGTTCCCG GGTCTCCACCTCATCTCTCTCAATATGAATTTTTGTTCCCG < 41bp 1 0.424806203771086 1 0.647922933101654 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6414500 chr11:6414487 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_20154 0 0 1 1 1 Endoplasmic reticulum 1 0.500231643921118 0.704154133796692 0.999536712157764 hm5C_site_21322 DeepMRMD:0.704154133796692;iRNA_m5C:0.999536712157764 21323 chr16 675983 675983 1 + G A COAD 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCCCGCACGTACGCAGAG < 41bp 1 0.571053108486026 1 0.781880855560303 experiment 0.857893783027947 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675983 nonsynonymous SNV 0.002 1 30 hm5C_associated_SNPs_20155 0 0 0 0 2 Ribosome 1 0.500231643918265 0.436238288879394 0.99953671216347 hm5C_site_21323 DeepMRMD:0.436238288879394;iRNA_m5C:0.99953671216347 21324 chr19 38655332 38655332 1 + G A COAD 38655333 + 38655313 38655353 41 GGCCAAGGCTCCACGGCCCGCCAAGCCACACAAGCCCCCTG GGCCAAGGCTCCACGGCCCACCAAGCCACACAAGCCCCCTG < 41bp 1 0.147232789314397 1 0.404816865921021 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38655333 chr19:38655332 nonsynonymous SNV 0.198 0 20 hm5C_associated_SNPs_20156 0 0 0 0 0 Ribosome 1 0.500231643921104 1 0.999536712157791 hm5C_site_21324 DeepMRMD:1;iRNA_m5C:0.999536712157791 21325 chr15 57731497 57731497 1 + C T COAD 57731482 + 57731462 57731502 41 CCCAGGTGTGCCCGCAGCGGCCACTGTCTCAGGAGCGCCGT CCCAGGTGTGCCCGCAGCGGCCACTGTCTCAGGAGTGCCGT < 41bp 1 0.178131245929106 1 0.0620703399181366 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57731482 chr15:57731497 nonsynonymous SNV 0.121 1 36 hm5C_associated_SNPs_20157 0 0 0 0 0 cytosol 1 0.500231643921075 1 0.99953671215785 hm5C_site_21325 DeepMRMD:1;iRNA_m5C:0.99953671215785 21326 chr16 22335865 22335865 1 + C A COAD 22335864 + 22335844 22335884 41 GGACTTCCTGGAGCACATGGCCGTGGTGAGGATCAACAAAG GGACTTCCTGGAGCACATGGCAGTGGTGAGGATCAACAAAG < 41bp 1 0.530980105436354 1 0.321810364723206 experiment 0.938039789127292 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22335864 chr16:22335865 synonymous SNV . 0 22 hm5C_associated_SNPs_20158 0 0 1 0 1 Ribosome 1 0.500231644125156 1 0.999536711749687 hm5C_site_21326 DeepMRMD:1;iRNA_m5C:0.999536711749687 21327 chr19 54969678 54969678 1 + G A COAD 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGCGCAAGGTCACCCTCAAGGCCATGATCAAAAC < 41bp 1 0.161402812235213 1 0.151391625404358 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969678 nonsynonymous SNV 0.998 3 19 hm5C_associated_SNPs_20159 0 0 1 0 1 chromatin 1 0.500231628671794 1 0.999536742656412 hm5C_site_21327 DeepMRMD:1;iRNA_m5C:0.999536742656412 21328 chr16 30750658 30750658 1 + C T COAD 30750662 + 30750642 30750682 41 TGGACTTAGCAGATAGCGGGCCAGGCGGGTTGGAATTGACA TGGACTTAGCAGATAGTGGGCCAGGCGGGTTGGAATTGACA < 41bp 1 0.215045905653881 1 0.159493446350098 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30750662 chr16:30750658 synonymous SNV . 0 17 hm5C_associated_SNPs_20160 1 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21328 DeepMRMD:1;iRNA_m5C:0.999536712157815 Floating-Harbor syndrome Floating-Harbor syndrome 21329 chr16 30750658 30750658 1 + C T COAD 30750663 + 30750643 30750683 41 GGACTTAGCAGATAGCGGGCCAGGCGGGTTGGAATTGACAC GGACTTAGCAGATAGTGGGCCAGGCGGGTTGGAATTGACAC < 41bp 1 0.381690908119753 1 0.476254969835281 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30750663 chr16:30750658 synonymous SNV . 0 16 hm5C_associated_SNPs_20161 1 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21329 DeepMRMD:1;iRNA_m5C:0.999536712157815 Floating-Harbor syndrome Floating-Harbor syndrome 21330 chr19 36370320 36370320 1 + C T COAD 36370340 + 36370320 36370360 41 CGCTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC TGCTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC < 41bp 1 0.437686839615756 1 0.0586024820804596 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370340 chr19:36370320 nonsynonymous SNV 1.000 5 1 hm5C_associated_SNPs_20162 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921088 1 0.999536712157825 hm5C_site_21330 DeepMRMD:1;iRNA_m5C:0.999536712157825 21331 chr2 127453576 127453576 1 + G A COAD 127453565 + 127453545 127453585 41 GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTACATGTA GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCACTACATGTA < 41bp 1 0.692544252668855 1 0.424920201301575 experiment 0.614911494662289 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GYPC ENSG00000136732 CDS Human protein_coding chr2:127453565 chr2:127453576 nonsynonymous SNV 0.003 0 32 hm5C_associated_SNPs_20163 0 0 1 2 1 Endoplasmic reticulum 1 0.500231643920418 1 0.999536712159164 hm5C_site_21331 DeepMRMD:1;iRNA_m5C:0.999536712159164 21332 chr6 151671215 151671215 1 + C T COAD 151671207 + 151671187 151671227 41 CTCCGGACAGCCAGGAGGAGCAAAAGGGCGAGAGCTCTGCC CTCCGGACAGCCAGGAGGAGCAAAAGGGTGAGAGCTCTGCC < 41bp 1 0.606647727536126 1 0.641935408115387 experiment 0.786704544927749 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151671207 chr6:151671215 synonymous SNV . 0 29 hm5C_associated_SNPs_20164 0 0 0 0 0 Ribosome 1 0.500231643921092 0.716129183769226 0.999536712157815 hm5C_site_21332 DeepMRMD:0.716129183769226;iRNA_m5C:0.999536712157815 21333 chr11 65156922 65156922 1 + G A COAD 65156938 + 65156918 65156958 41 CACCGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC CACCACGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC < 41bp 1 0.0673241420408564 1 0.0715934932231903 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65156938 chr11:65156922 nonsynonymous SNV 0.966 2 5 hm5C_associated_SNPs_20165 0 0 0 0 2 Ribosome 1 0.500235159486773 1 0.999529681026455 hm5C_site_21333 DeepMRMD:1;iRNA_m5C:0.999529681026455 21334 chr2 27277614 27277614 1 + G A COAD 27277595 + 27277575 27277615 41 TCACTTCCTGCCATGGGCTTCGAGAAGATCGAGAGCCCCGT TCACTTCCTGCCATGGGCTTCGAGAAGATCGAGAGCCCCAT < 41bp 1 0.683912876972156 1 0.854221343994141 experiment 0.632174246055688 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27277595 chr2:27277614 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_20166 0 0 1 0 0 Cytosol 1 0.500231643928166 0.291557312011718 0.999536712143669 hm5C_site_21334 DeepMRMD:0.291557312011718;iRNA_m5C:0.999536712143669 21335 chr5 10411484 10411484 1 + T C COAD 10411473 + 10411453 10411493 41 ATTCTTATTTATTGGGAGACCAGGAAGAAAATGAAAACAGT ATTCTTATTTATTGGGAGACCAGGAAGAAAACGAAAACAGT < 41bp 1 0.577766218871868 1 0.750838041305542 experiment 0.844467562256263 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10411473 chr5:10411484 synonymous SNV . 0 32 hm5C_associated_SNPs_20167 0 0 1 0 1 Nucleus 1 0.500231643921095 0.498323917388916 0.999536712157809 hm5C_site_21335 DeepMRMD:0.498323917388916;iRNA_m5C:0.999536712157809 21336 chr17 67515559 67515559 1 + G A COAD 67515562 + 67515542 67515582 41 CTGTCACCTTTTATGGCGCACTGTTTCGGGAGGTAGGTGAC CTGTCACCTTTTATGGCACACTGTTTCGGGAGGTAGGTGAC < 41bp 1 0.250188822163535 1 0.0393846035003662 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67515562 chr17:67515559 nonsynonymous SNV 0.986 3 18 hm5C_associated_SNPs_20168 0 0 1 0 1 cytosol 1 0.500230998229393 1 0.999538003541215 hm5C_site_21336 DeepMRMD:1;iRNA_m5C:0.999538003541215 21337 chr22 39770435 39770435 1 + G A COAD 39770450 + 39770430 39770470 41 ATGGCGTGGCCGTGGGCGTGCTCGCCTTCCTCACCTGCCTG ATGGCATGGCCGTGGGCGTGCTCGCCTTCCTCACCTGCCTG < 41bp 1 0.593722990666707 1 0.0804086625576019 experiment 0.812554018666586 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNGR1 ENSG00000100321 CDS Human protein_coding chr22:39770450 chr22:39770435 nonsynonymous SNV 0.895 3 6 hm5C_associated_SNPs_20169 0 0 1 0 0 Endoplasmic reticulum 1 0.500231233498971 1 0.999537533002058 hm5C_site_21337 DeepMRMD:1;iRNA_m5C:0.999537533002058 21338 chr2 189873894 189873894 1 + A C COAD 189873898 + 189873878 189873918 41 GATGGTTCTCGTAAAAACCCCGCTAGAAACTGCAGAGACCT GATGGTTCTCGTAAAACCCCCGCTAGAAACTGCAGAGACCT < 41bp 1 0.284943665357055 1 0.19341653585434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189873898 chr2:189873894 nonsynonymous SNV 0.997 1 17 hm5C_associated_SNPs_20170 0 0 0 0 1 Endoplasmic reticulum 1 0.500231450928789 1 0.999537098142423 hm5C_site_21338 DeepMRMD:1;iRNA_m5C:0.999537098142423 21339 chr1 156876652 156876652 1 + C T COAD 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCTGCAGAGAG < 41bp 1 0.338088596934687 1 0.185085475444794 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876652 synonymous SNV . 0 33 hm5C_associated_SNPs_20171 0 0 0 0 1 cytosol 1 0.500231643920913 1 0.999536712158174 hm5C_site_21339 DeepMRMD:1;iRNA_m5C:0.999536712158174 21340 chr10 43604481 43604481 1 + C T COAD 43604501 + 43604481 43604521 41 CTGGTTCTCAACCGGAACCTCTCCATCTCGGAGAACCGCAC TTGGTTCTCAACCGGAACCTCTCCATCTCGGAGAACCGCAC < 41bp 1 0.658229472227978 1 0.954377830028534 experiment 0.683541055544044 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RET ENSG00000165731 CDS Human protein_coding chr10:43604501 chr10:43604481 synonymous SNV . 0 1 hm5C_associated_SNPs_20173 1 0 0 0 1 Cytosol 1 0.500231643766804 0.0912443399429319 0.999536712466392 hm5C_site_21340 DeepMRMD:0.0912443399429319;iRNA_m5C:0.999536712466392 Hereditary cancer-predisposing syndrome Hereditary cancer-predisposing syndrome 21341 chr19 45797675 45797675 1 + G T COAD 45797692 + 45797672 45797712 41 TGAGCGCCCGTCACTGTTGCCAAATGGGAAAGAAAACAGGT TGATCGCCCGTCACTGTTGCCAAATGGGAAAGAAAACAGGT < 41bp 1 0.228842209846479 1 0.816802203655243 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797692 chr19:45797675 nonsynonymous SNV 0.977 1 4 hm5C_associated_SNPs_20174 0 0 1 0 2 Nucleus 1 0.50023164392142 0.366395592689514 0.999536712157159 hm5C_site_21341 DeepMRMD:0.366395592689514;iRNA_m5C:0.999536712157159 21342 chr17 4685827 4685827 1 + C T COAD 4685815 + 4685795 4685835 41 CAGATGCTGCGCTCGGTCTTCTCCTCGGCGTTCGGGGTGCT CAGATGCTGCGCTCGGTCTTCTCCTCGGCGTTTGGGGTGCT < 41bp 1 0.407338402086912 1 0.436673521995544 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4685815 chr17:4685827 synonymous SNV . 0 33 hm5C_associated_SNPs_20176 0 0 1 0 1 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_21342 DeepMRMD:1;iRNA_m5C:0.999536712157815 21343 chrX 47774360 47774360 1 + T G COAD 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAAGCCTTCCCAGAGGAGAATGTCTGGGAA < 41bp 1 0.226383131420784 1 0.592284679412842 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774360 nonsynonymous SNV 0.759 0 33 hm5C_associated_SNPs_20177 0 0 0 0 1 cytosol 1 0.500231643921092 0.815430641174316 0.999536712157815 hm5C_site_21343 DeepMRMD:0.815430641174316;iRNA_m5C:0.999536712157815 21344 chr6 139487470 139487470 1 + C T COAD 139487463 + 139487443 139487483 41 GATCTGCAGCTTCGGTAGGCCGGTGGACCTGGAGAAGGACG GATCTGCAGCTTCGGTAGGCCGGTGGATCTGGAGAAGGACG < 41bp 1 0.530876897993428 1 0.513662934303284 experiment 0.938246204013143 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECA ENSG00000112406 CDS Human protein_coding chr6:139487463 chr6:139487470 synonymous SNV . 0 28 hm5C_associated_SNPs_20178 0 0 1 0 1 Ribosome 1 0.500211152427189 0.972674131393432 0.999577695145623 hm5C_site_21344 DeepMRMD:0.972674131393432;iRNA_m5C:0.999577695145623 21345 chr19 1978445 1978445 1 + C T COAD 1978465 + 1978445 1978485 41 CGATCAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG TGATCAAGTCCCGGGCCCCGCAGCTGCACCTGGAGTACCGG < 41bp 1 0.461730765032173 1 0.775980472564697 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978465 chr19:1978445 nonsynonymous SNV 0.966 2 1 hm5C_associated_SNPs_20180 0 0 1 0 2 Ribosome 1 0.500231643921092 0.448039054870606 0.999536712157815 hm5C_site_21345 DeepMRMD:0.448039054870606;iRNA_m5C:0.999536712157815 21346 chr5 7889311 7889311 1 + T C COAD 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGCAC < 41bp 1 0.224233241508487 1 0.110122352838516 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889311 nonsynonymous SNV 0.002 1 39 hm5C_associated_SNPs_20181 0 0 1 1 1 Nucleus 1 0.500231643933294 1 0.999536712133412 hm5C_site_21346 DeepMRMD:1;iRNA_m5C:0.999536712133412 21347 chr1 78001623 78001623 1 + T C COAD 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGCGGACGACAC < 41bp 1 0.370552992081492 1 0.440526396036148 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001623 nonsynonymous SNV 0.000 0 32 hm5C_associated_SNPs_20182 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21347 DeepMRMD:1;iRNA_m5C:0.999536712157815 21348 chr16 70509358 70509358 1 + T C COAD 70509347 + 70509327 70509367 41 CTGCTCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG CTGCTCCGCACCTTCGGGGGCGGCTTTGAGCCGCACACCTG < 41bp 1 0.382970111469673 1 0.36390945315361 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70509347 chr16:70509358 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_20183 0 0 1 0 1 chromatin 1 0.500231643921098 1 0.999536712157804 hm5C_site_21348 DeepMRMD:1;iRNA_m5C:0.999536712157804 21349 chr3 9776020 9776020 1 + C T COAD 9776023 + 9776003 9776043 41 AGCACAAGAAAAAGGGGCGCCAGTCACGCCCAGCCAACAAG AGCACAAGAAAAAGGGGTGCCAGTCACGCCCAGCCAACAAG < 41bp 1 0.184402979030933 1 0.112033993005753 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9776023 chr3:9776020 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_20184 0 0 0 0 0 Nucleus 1 0.500231599139278 1 0.999536801721445 hm5C_site_21349 DeepMRMD:1;iRNA_m5C:0.999536801721445 21350 chr19 13930237 13930237 1 + G A COAD 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CCCATGCACACCTGTGCCCACTACCTGTTCACCGCACTGCT < 41bp 1 0.156162167971747 1 0.0408629477024078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930237 nonsynonymous SNV 0.968 1 20 hm5C_associated_SNPs_20185 0 0 1 0 2 chromatin 1 0.500231643920416 1 0.999536712159167 hm5C_site_21350 DeepMRMD:1;iRNA_m5C:0.999536712159167 21351 chr20 52835664 52835664 1 + T C COAD 52835659 + 52835639 52835679 41 TTGTATGCAAAATTCGGGAGCAACATAAACCTTGAAGCTGA TTGTATGCAAAATTCGGGAGCAACACAAACCTTGAAGCTGA < 41bp 1 0.603021213532217 1 0.111890882253647 experiment 0.793957572935567 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PFDN4 ENSG00000101132 CDS Human protein_coding chr20:52835659 chr20:52835664 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_20186 0 0 1 0 0 Ribosome 1 0.500276932017265 1 0.999446135965469 hm5C_site_21351 DeepMRMD:1;iRNA_m5C:0.999446135965469 21352 chr2 130939973 130939973 1 + C T COAD 130939957 + 130939937 130939977 41 CGGCGGAAGAAGGTGCTGAGCACCGAGGAGATGGAGCTGTA CGGCGGAAGAAGGTGCTGAGCACCGAGGAGATGGAGTTGTA < 41bp 1 0.616605639049083 1 0.193442434072495 experiment 0.766788721901835 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MZT2B ENSG00000152082 CDS Human protein_coding chr2:130939957 chr2:130939973 synonymous SNV . 0 37 hm5C_associated_SNPs_20187 0 0 1 0 1 Ribosome 1 0.500231628151788 1 0.999536743696424 hm5C_site_21352 DeepMRMD:1;iRNA_m5C:0.999536743696424 21353 chr2 189458720 189458720 1 + G A COAD 189458701 + 189458681 189458721 41 GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCAT < 41bp 1 0.61055792879926 1 0.112538546323776 experiment 0.77888414240148 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458701 chr2:189458720 synonymous SNV . 0 40 hm5C_associated_SNPs_20188 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21353 DeepMRMD:1;iRNA_m5C:0.999536712157815 21354 chr2 189458720 189458720 1 + G A COAD 189458714 + 189458694 189458734 41 GAAGGCACAGTATTTTGTCTCGACCCGTTAGACAGTAGGTG GAAGGCACAGTATTTTGTCTCGACCCATTAGACAGTAGGTG < 41bp 1 0.320207044873536 1 0.329787701368332 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458714 chr2:189458720 synonymous SNV . 0 27 hm5C_associated_SNPs_20189 0 0 1 0 1 Ribosome 1 0.500231643921371 1 0.999536712157259 hm5C_site_21354 DeepMRMD:1;iRNA_m5C:0.999536712157259 21355 chr13 52293457 52293457 1 + G A COAD 52293456 + 52293436 52293476 41 GGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA GGCAGCGCCTGGGAGGTTATCAGACCAGTGCTGTGGCCTCA < 41bp 1 0.48844207275262 1 0.882612228393555 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52293456 chr13:52293457 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_20190 0 0 1 0 1 Cytosol 1 0.500231556047455 0.23477554321289 0.999536887905091 hm5C_site_21355 DeepMRMD:0.23477554321289;iRNA_m5C:0.999536887905091 21356 chr15 85164147 85164147 1 + G A COAD 85164140 + 85164120 85164160 41 AGCCGGAAATCCCACCTCATCACACACGAGAGGACCCACAC AGCCGGAAATCCCACCTCATCACACACAAGAGGACCCACAC < 41bp 1 0.429244334922173 1 0.540036499500275 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSCAN2 ENSG00000176371 CDS Human protein_coding chr15:85164140 chr15:85164147 nonsynonymous SNV 0.371 0 28 hm5C_associated_SNPs_20191 0 0 1 0 0 Nucleus 1 0.500231643921092 0.91992700099945 0.999536712157816 hm5C_site_21356 DeepMRMD:0.91992700099945;iRNA_m5C:0.999536712157816 21357 chr8 95885679 95885679 1 + G A COAD 95885659 + 95885639 95885679 41 CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTA < 41bp 1 0.606656112171103 1 0.171868026256561 experiment 0.786687775657793 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95885659 chr8:95885679 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_20192 0 0 1 0 2 Nucleus 1 0.500232074259497 1 0.999535851481005 hm5C_site_21357 DeepMRMD:1;iRNA_m5C:0.999535851481005 21358 chr10 287975 287975 1 + G A COAD 287976 + 287956 287996 41 TCCAGATACCTAATCATGAGCTGGTTTGGGCTAAAATGAAA TCCAGATACCTAATCATGAACTGGTTTGGGCTAAAATGAAA < 41bp 1 0.50051135294069 1 0.153655201196671 experiment 0.998977294118621 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:287976 chr10:287975 synonymous SNV . 0 20 hm5C_associated_SNPs_20193 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_21358 DeepMRMD:1;iRNA_m5C:0.999536712157815 21359 chr10 103292173 103292173 1 + G A COAD 103292177 + 103292157 103292197 41 ATAGTAAGCGGCCTTCGAGACAACACAATCAAGGTGAGGTC ATAGTAAGCGGCCTTCAAGACAACACAATCAAGGTGAGGTC < 41bp 1 0.609638939029339 1 0.262453019618988 experiment 0.780722121941322 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BTRC ENSG00000166167 CDS Human protein_coding chr10:103292177 chr10:103292173 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_20194 0 0 0 0 1 chromatin 1 0.500231644464172 1 0.999536711071656 hm5C_site_21359 DeepMRMD:1;iRNA_m5C:0.999536711071656 21360 chr9 97767846 97767846 1 + A C COAD 97767847 + 97767827 97767867 41 ACGAAATGGATTGGAGTGAACCGGAGACCCCGAAAACGGAA ACGAAATGGATTGGAGTGACCCGGAGACCCCGAAAACGGAA < 41bp 1 0.658528383161823 1 0.734252035617828 experiment 0.682943233676354 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97767847 chr9:97767846 nonsynonymous SNV 0.814 2 20 hm5C_associated_SNPs_20195 0 0 1 0 2 Cytosol 1 0.500231643966023 0.531495928764344 0.999536712067954 hm5C_site_21360 DeepMRMD:0.531495928764344;iRNA_m5C:0.999536712067954 21361 chr2 204053285 204053285 1 + A G COAD 204053265 + 204053245 204053285 41 TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTCA TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTCG < 41bp 1 0.148502526022557 1 0.486796587705612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204053265 chr2:204053285 nonsynonymous SNV 0.996 5 41 hm5C_associated_SNPs_20196 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_21361 DeepMRMD:1;iRNA_m5C:0.999536712157815 21362 chr7 99621873 99621873 1 + G A COAD 99621875 + 99621855 99621895 41 TTTGACCTTCATCACGAGGCCACCCAGTCCCACTTCAAACA TTTGACCTTCATCACGAGACCACCCAGTCCCACTTCAAACA < 41bp 1 0.317356986487522 1 0.0715994238853455 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99621875 chr7:99621873 nonsynonymous SNV 0.964 0 19 hm5C_associated_SNPs_20197 0 0 1 0 2 Cytosol 1 0.500231656663974 1 0.999536686672051 hm5C_site_21362 DeepMRMD:1;iRNA_m5C:0.999536686672051 21363 chr3 57898181 57898181 1 + A C COAD 57898199 + 57898179 57898219 41 AGAGATGAATTGCTTAGTGCCCGAGATGAAATTTTGCTCCT AGCGATGAATTGCTTAGTGCCCGAGATGAAATTTTGCTCCT < 41bp 1 0.579949404499702 1 0.754823684692383 experiment 0.840101191000596 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLMAP ENSG00000163681 CDS Human protein_coding chr3:57898199 chr3:57898181 nonsynonymous SNV 0.989 1 3 hm5C_associated_SNPs_20198 0 0 1 0 1 Ribosome 1 0.500231646118166 0.490352630615234 0.999536707763668 hm5C_site_21363 DeepMRMD:0.490352630615234;iRNA_m5C:0.999536707763668 21364 chr1 107599898 107599898 1 + C A COAD 107599880 + 107599860 107599900 41 ACCAAGTGGCTGAAGGAGGGCGGTCTTCTCCTGCCGGCCTC ACCAAGTGGCTGAAGGAGGGCGGTCTTCTCCTGCCGGCATC < 41bp 1 0.49266260972814 1 0.243027806282043 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRMT6 ENSG00000198890 CDS Human protein_coding chr1:107599880 chr1:107599898 synonymous SNV . 0 39 hm5C_associated_SNPs_20199 0 0 0 0 0 Ribosome 1 0.500231643921096 1 0.999536712157809 hm5C_site_21364 DeepMRMD:1;iRNA_m5C:0.999536712157809 21365 chr22 21345925 21345925 1 + G A COAD 21345926 + 21345906 21345946 41 TGTACCCCCAGGTGGACACGCATCCCAACTGAACACCTGCT TGTACCCCCAGGTGGACACACATCCCAACTGAACACCTGCT < 41bp 1 0.0574001077080899 1 0.0876547694206238 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21345926 chr22:21345925 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_20200 0 0 1 0 1 Nucleus 1 0.500231643587278 1 0.999536712825444 hm5C_site_21365 DeepMRMD:1;iRNA_m5C:0.999536712825444 21366 chr16 27751921 27751921 1 + G A COAD 27751914 + 27751894 27751934 41 CCACCGGCAAGGACAGGAAGCAGGGAGGCAGGAAGCCAAAA CCACCGGCAAGGACAGGAAGCAGGGAGACAGGAAGCCAAAA < 41bp 1 0.668398468314486 1 0.921148896217346 experiment 0.663203063371029 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27751914 chr16:27751921 nonsynonymous SNV 0.003 0 28 hm5C_associated_SNPs_20201 0 0 0 0 0 Nucleus 1 0.500231643921307 0.157702207565308 0.999536712157386 hm5C_site_21366 DeepMRMD:0.157702207565308;iRNA_m5C:0.999536712157386 21367 chr7 5644956 5644956 1 + G A COAD 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA AGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA < 41bp 1 0.230654783329136 1 0.183800637722015 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644956 nonsynonymous SNV 0.955 0 1 hm5C_associated_SNPs_20202 0 0 1 1 1 Ribosome 1 0.500231643919887 1 0.999536712160226 hm5C_site_21367 DeepMRMD:1;iRNA_m5C:0.999536712160226 21368 chr19 11145689 11145689 1 + G A COAD 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACA < 41bp 1 0.196785217959161 1 0.144530385732651 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145689 nonsynonymous SNV 0.464 4 41 hm5C_associated_SNPs_20203 0 0 1 0 1 Nucleus 1 0.50023164344987 1 0.99953671310026 hm5C_site_21368 DeepMRMD:1;iRNA_m5C:0.99953671310026 21369 chr19 11145689 11145689 1 + G A COAD 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACAACG < 41bp 1 0.591752329720875 1 0.521915912628174 experiment 0.81649534055825 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145689 nonsynonymous SNV 0.464 4 38 hm5C_associated_SNPs_20204 0 0 1 0 1 Nucleus 1 0.500231643921092 0.956168174743652 0.999536712157815 hm5C_site_21369 DeepMRMD:0.956168174743652;iRNA_m5C:0.999536712157815 21370 chr19 11145689 11145689 1 + G A COAD 11145704 + 11145684 11145724 41 AGGACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG AGGACAACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG < 41bp 1 0.473288650001019 1 0.517554402351379 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145704 chr19:11145689 nonsynonymous SNV 0.464 4 6 hm5C_associated_SNPs_20206 0 0 1 0 1 Nucleus 1 0.500231643921092 0.964891195297242 0.999536712157815 hm5C_site_21370 DeepMRMD:0.964891195297242;iRNA_m5C:0.999536712157815 21371 chr19 11145689 11145689 1 + G A COAD 11145707 + 11145687 11145727 41 ACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG ACAACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG < 41bp 1 0.222537161482395 1 0.246035575866699 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145707 chr19:11145689 nonsynonymous SNV 0.464 4 3 hm5C_associated_SNPs_20207 0 0 1 0 1 Nucleus 1 0.500231643907949 1 0.999536712184101 hm5C_site_21371 DeepMRMD:1;iRNA_m5C:0.999536712184101 21372 chr17 78346491 78346491 1 + C T COAD 78346488 + 78346468 78346508 41 GTGGCCCGGATCCGCCTCTGCCTCGACAGAGCTGCAGATTT GTGGCCCGGATCCGCCTCTGCCTTGACAGAGCTGCAGATTT < 41bp 1 0.0195080363672755 1 0.0652096271514893 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78346488 chr17:78346491 synonymous SNV . 0 24 hm5C_associated_SNPs_20208 0 0 1 0 0 Nucleus 1 0.50023164392106 1 0.999536712157881 hm5C_site_21372 DeepMRMD:1;iRNA_m5C:0.999536712157881 21373 chr17 78346491 78346491 1 + C T COAD 78346494 + 78346474 78346514 41 CGGATCCGCCTCTGCCTCGACAGAGCTGCAGATTTCCTCTC CGGATCCGCCTCTGCCTTGACAGAGCTGCAGATTTCCTCTC < 41bp 1 0.260784306256229 1 0.683984816074371 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78346494 chr17:78346491 synonymous SNV . 0 18 hm5C_associated_SNPs_20209 0 0 1 0 0 Nucleus 1 0.500231643921092 0.632030367851258 0.999536712157815 hm5C_site_21373 DeepMRMD:0.632030367851258;iRNA_m5C:0.999536712157815 21374 chr2 160087103 160087103 1 + G A COAD 160087089 + 160087069 160087109 41 GCGGTACAGCTGAGCACAGACCCCGCAACACGCCGTTCATG GCGGTACAGCTGAGCACAGACCCCGCAACACGCCATTCATG < 41bp 1 0.22199370886233 1 0.309577465057373 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160087089 chr2:160087103 synonymous SNV . 0 35 hm5C_associated_SNPs_20210 0 0 1 1 0 Nucleus 1 0.500231644691189 1 0.999536710617622 hm5C_site_21374 DeepMRMD:1;iRNA_m5C:0.999536710617622 21375 chr19 10893717 10893717 1 + A C COAD 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGACGTTCTTCCTCTCCCACCCGGCCTA < 41bp 1 0.180642926482493 1 0.115686297416687 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893717 nonsynonymous SNV 0.996 4 17 hm5C_associated_SNPs_20211 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21375 DeepMRMD:1;iRNA_m5C:0.999536712157815 21376 chr1 53420462 53420462 1 + A G COAD 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGAGTAAGGGAGGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.307514968564535 1 0.183474898338318 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420462 nonsynonymous SNV 0.004 3 18 hm5C_associated_SNPs_20212 0 0 1 1 2 Ribosome 1 0.500231725546592 1 0.999536548906815 hm5C_site_21376 DeepMRMD:1;iRNA_m5C:0.999536548906815 21377 chr2 42909547 42909547 1 + G A COAD 42909544 + 42909524 42909564 41 TCATTTTGTTTCTTTAGTTTCACGCTATGGATACATTGTAT TCATTTTGTTTCTTTAGTTTCACACTATGGATACATTGTAT < 41bp 1 0.0587374311710698 1 0.165441006422043 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTA3 ENSG00000057935 CDS Human protein_coding chr2:42909544 chr2:42909547 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_20213 0 0 1 0 1 Cytosol 1 0.500233343460099 1 0.999533313079802 hm5C_site_21377 DeepMRMD:1;iRNA_m5C:0.999533313079802 21378 chr16 70589098 70589098 1 + G A COAD 70589086 + 70589066 70589106 41 TTGCCCTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGAT TTGCCCTGACAGGAGGAGAGCTGGTCTATTTCAAGATGGAT < 41bp 1 0.209837980338373 1 0.180598556995392 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589086 chr16:70589098 nonsynonymous SNV 0.996 4 33 hm5C_associated_SNPs_20214 0 0 1 0 1 Cytosol 1 0.500231644383639 1 0.999536711232722 hm5C_site_21378 DeepMRMD:1;iRNA_m5C:0.999536711232722 21379 chr16 70589098 70589098 1 + G A COAD 70589091 + 70589071 70589111 41 CTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGATCCTGT CTGACAGGAGGAGAGCTGGTCTATTTCAAGATGGATCCTGT < 41bp 1 0.0782239318343613 1 0.0823500156402588 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589091 chr16:70589098 nonsynonymous SNV 0.996 4 28 hm5C_associated_SNPs_20215 0 0 1 0 1 Cytosol 1 0.500231670769228 1 0.999536658461543 hm5C_site_21379 DeepMRMD:1;iRNA_m5C:0.999536658461543 21380 chr2 29344276 29344276 1 + G T COAD 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TAGAGGACCTTCCATATTTTCCATTAGAAGGAAATCCTTTG < 41bp 1 0.0746097830255213 1 0.0392806231975555 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344276 nonsynonymous SNV 0.991 1 15 hm5C_associated_SNPs_20216 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21380 DeepMRMD:1;iRNA_m5C:0.999536712157815 21381 chrX 41075247 41075247 1 + A T COAD 41075229 + 41075209 41075249 41 CTAAAGCGATTTGACTATGACTGGGAAAGAGAATGTGCAAT CTAAAGCGATTTGACTATGACTGGGAAAGAGAATGTGCTAT < 41bp 1 0.378960159238685 1 0.242537409067154 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41075229 chrX:41075247 synonymous SNV . 0 39 hm5C_associated_SNPs_20217 0 0 1 0 1 Nucleus 1 0.50023164392746 1 0.99953671214508 hm5C_site_21381 DeepMRMD:1;iRNA_m5C:0.99953671214508 21382 chr16 2814615 2814615 1 + G A COAD 2814601 + 2814581 2814621 41 TTAAAGAAGATTTGAATGGACCGTTTCTTAATCAGCTGGAA TTAAAGAAGATTTGAATGGACCGTTTCTTAATCAACTGGAA < 41bp 1 0.026880646594498 1 0.0330659747123718 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2814601 chr16:2814615 synonymous SNV . 0 35 hm5C_associated_SNPs_20219 0 0 1 0 0 Nucleus 1 0.500231644222181 1 0.999536711555638 hm5C_site_21382 DeepMRMD:1;iRNA_m5C:0.999536711555638 21383 chr16 2814615 2814615 1 + G A COAD 2814613 + 2814593 2814633 41 TGAATGGACCGTTTCTTAATCAGCTGGAAACAGATCCATCT TGAATGGACCGTTTCTTAATCAACTGGAAACAGATCCATCT < 41bp 1 0.19291494217352 1 0.773923993110657 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2814613 chr16:2814615 synonymous SNV . 0 23 hm5C_associated_SNPs_20220 0 0 1 0 0 Nucleus 1 0.500231643921174 0.452152013778686 0.999536712157652 hm5C_site_21383 DeepMRMD:0.452152013778686;iRNA_m5C:0.999536712157652 21384 chr21 40191440 40191440 1 + C A COAD 40191451 + 40191431 40191471 41 TCCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT TCCCAAAGAACACGACTCCCCTGAGAACGGTGCGGACAGCT < 41bp 1 0.541512849161963 1 0.430762946605682 experiment 0.916974301676074 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191451 chr21:40191440 nonsynonymous SNV 0.034 0 10 hm5C_associated_SNPs_20221 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21384 DeepMRMD:1;iRNA_m5C:0.999536712157815 21385 chr14 53226459 53226459 1 + T C COAD 53226460 + 53226440 53226480 41 AATCCTAATGCTGGATTTGTCCATCAACTTCAGGTAACTTT AATCCTAATGCTGGATTTGCCCATCAACTTCAGGTAACTTT < 41bp 1 0.0614838551550069 1 0.290076613426208 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STYX ENSG00000198252 CDS Human protein_coding chr14:53226460 chr14:53226459 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_20222 0 0 1 0 2 Nucleus 1 0.500231643921034 1 0.999536712157933 hm5C_site_21385 DeepMRMD:1;iRNA_m5C:0.999536712157933 21386 chr14 53226459 53226459 1 + T C COAD 53226470 + 53226450 53226490 41 CTGGATTTGTCCATCAACTTCAGGTAACTTTTCTTCCTCTT CTGGATTTGCCCATCAACTTCAGGTAACTTTTCTTCCTCTT < 41bp 1 0.544088065239978 1 0.7628413438797 experiment 0.911823869520044 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control STYX ENSG00000198252 CDS Human protein_coding chr14:53226470 chr14:53226459 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_20223 0 0 1 0 2 Nucleus 1 0.500231643926195 0.4743173122406 0.99953671214761 hm5C_site_21386 DeepMRMD:0.4743173122406;iRNA_m5C:0.99953671214761 21387 chr18 77895407 77895407 1 + C T COAD 77895411 + 77895391 77895431 41 TGCAACGAGCTCTTTCCGTCCAACGTCTACCAGGTCCACAT TGCAACGAGCTCTTTCTGTCCAACGTCTACCAGGTCCACAT < 41bp 1 0.513850246246202 1 0.330947995185852 experiment 0.972299507507596 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADNP2 ENSG00000101544 CDS Human protein_coding chr18:77895411 chr18:77895407 nonsynonymous SNV 0.454 4 17 hm5C_associated_SNPs_20224 0 0 1 0 0 Cytosol 1 0.500231643309698 1 0.999536713380605 hm5C_site_21387 DeepMRMD:1;iRNA_m5C:0.999536713380605 21388 chr20 62366598 62366598 1 + C G COAD 62366599 + 62366579 62366619 41 CTGGACCAGTGTGTGGAGACCCTGCAGAAGCAGACCAGGGT CTGGACCAGTGTGTGGAGAGCCTGCAGAAGCAGACCAGGGT < 41bp 1 0.0695836071003268 1 0.443540096282959 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62366599 chr20:62366598 nonsynonymous SNV 0.013 1 20 hm5C_associated_SNPs_20225 0 0 1 0 2 chromatin 1 0.500231653160816 1 0.999536693678368 hm5C_site_21388 DeepMRMD:1;iRNA_m5C:0.999536693678368 21389 chr2 162242082 162242082 1 + G A COAD 162242075 + 162242055 162242095 41 GGGTCACTTAAACAAGCCATCTATCCAGGTATTGCCTATAT GGGTCACTTAAACAAGCCATCTATCCAAGTATTGCCTATAT < 41bp 1 0.081705485142934 1 0.267526358366013 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162242075 chr2:162242082 synonymous SNV . 0 28 hm5C_associated_SNPs_20226 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21389 DeepMRMD:1;iRNA_m5C:0.999536712157815 21390 chr1 20977173 20977173 1 + G A COAD 20977174 + 20977154 20977194 41 CCTCCTCTGCTCATGGAGGGCAGCCCTGTGATGTCCCTGCA CCTCCTCTGCTCATGGAGGACAGCCCTGTGATGTCCCTGCA < 41bp 1 0.39535613625189 1 0.278109759092331 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PINK1 ENSG00000158828 CDS Human protein_coding chr1:20977174 chr1:20977173 nonsynonymous SNV 0.995 1 20 hm5C_associated_SNPs_20228 0 0 1 0 0 Ribosome 1 0.500231643221544 1 0.999536713556912 hm5C_site_21390 DeepMRMD:1;iRNA_m5C:0.999536713556912 21391 chr6 31593370 31593370 1 + C T COAD 31593350 + 31593330 31593370 41 GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGT < 41bp 1 0.53681996426197 1 0.255204319953918 experiment 0.92636007147606 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593350 chr6:31593370 synonymous SNV . 0 41 hm5C_associated_SNPs_20229 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21391 DeepMRMD:1;iRNA_m5C:0.999536712157815 21392 chr6 31593370 31593370 1 + C T COAD 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGTG < 41bp 1 0.386938764480967 1 0.0896115005016327 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593370 synonymous SNV . 0 40 hm5C_associated_SNPs_20230 0 0 1 1 1 Ribosome 1 0.50023164392531 1 0.99953671214938 hm5C_site_21392 DeepMRMD:1;iRNA_m5C:0.99953671214938 21393 chr6 31593370 31593370 1 + C T COAD 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGTGG < 41bp 1 0.343746388630413 1 0.101510733366013 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593370 synonymous SNV . 0 39 hm5C_associated_SNPs_20231 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21393 DeepMRMD:1;iRNA_m5C:0.999536712157815 21394 chr6 31593370 31593370 1 + C T COAD 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGTGGA < 41bp 1 0.289890815152502 1 0.327859133481979 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593370 synonymous SNV . 0 38 hm5C_associated_SNPs_20232 0 0 1 1 1 Ribosome 1 0.500231643927429 1 0.999536712145142 hm5C_site_21394 DeepMRMD:1;iRNA_m5C:0.999536712145142 21395 chr6 31593370 31593370 1 + C T COAD 31593388 + 31593368 31593408 41 CGCGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC CGTGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC < 41bp 1 0.667985829078255 1 0.736867547035217 experiment 0.66402834184349 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593388 chr6:31593370 synonymous SNV . 0 3 hm5C_associated_SNPs_20233 0 0 1 1 1 Ribosome 1 0.499610248183829 0.526264905929566 1 hm5C_site_21395 DeepMRMD:0.526264905929566;iRNA_m5C:1 21396 chr4 77661609 77661609 1 + C T COAD 77661597 + 77661577 77661617 41 CCGCACACATCCAGTCTGGGCCGGAGGGGGCCCGGCCCAGG CCGCACACATCCAGTCTGGGCCGGAGGGGGCCTGGCCCAGG < 41bp 1 0.650221715697488 1 0.509332716464996 experiment 0.699556568605024 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661597 chr4:77661609 synonymous SNV . 0 33 hm5C_associated_SNPs_20234 0 0 0 0 0 Ribosome 1 0.500231579356731 0.981334567070008 0.999536841286538 hm5C_site_21396 DeepMRMD:0.981334567070008;iRNA_m5C:0.999536841286538 21397 chr4 77661609 77661609 1 + C T COAD 77661598 + 77661578 77661618 41 CGCACACATCCAGTCTGGGCCGGAGGGGGCCCGGCCCAGGC CGCACACATCCAGTCTGGGCCGGAGGGGGCCTGGCCCAGGC < 41bp 1 0.647457492671507 1 0.694994807243347 experiment 0.705085014656986 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661598 chr4:77661609 synonymous SNV . 0 32 hm5C_associated_SNPs_20235 0 0 0 0 0 Ribosome 1 0.500231643913021 0.610010385513306 0.999536712173959 hm5C_site_21397 DeepMRMD:0.610010385513306;iRNA_m5C:0.999536712173959 21398 chr4 77661609 77661609 1 + C T COAD 77661608 + 77661588 77661628 41 CAGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGG CAGTCTGGGCCGGAGGGGGCCTGGCCCAGGCAGCGCCTCGG < 41bp 1 0.472020802441847 1 0.479998558759689 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661608 chr4:77661609 synonymous SNV . 0 22 hm5C_associated_SNPs_20236 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_21398 DeepMRMD:1;iRNA_m5C:0.999536712157815 21399 chr4 77661609 77661609 1 + C T COAD 77661612 + 77661592 77661632 41 CTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGCTCT CTGGGCCGGAGGGGGCCTGGCCCAGGCAGCGCCTCGGCTCT < 41bp 1 0.397612939197435 1 0.206759184598923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661612 chr4:77661609 synonymous SNV . 0 18 hm5C_associated_SNPs_20237 0 0 0 0 0 Ribosome 1 0.500231643921079 1 0.999536712157842 hm5C_site_21399 DeepMRMD:1;iRNA_m5C:0.999536712157842 21400 chr4 77661609 77661609 1 + C T COAD 77661613 + 77661593 77661633 41 TGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGCTCTT TGGGCCGGAGGGGGCCTGGCCCAGGCAGCGCCTCGGCTCTT < 41bp 1 0.460680259521776 1 0.284095406532288 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661613 chr4:77661609 synonymous SNV . 0 17 hm5C_associated_SNPs_20238 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21400 DeepMRMD:1;iRNA_m5C:0.999536712157815 21401 chr17 16335471 16335471 1 + C T COAD 16335468 + 16335448 16335488 41 GCGAGCTGGCCTTCCAGGAGCAGCTGCACTTCCGCGGCATG GCGAGCTGGCCTTCCAGGAGCAGTTGCACTTCCGCGGCATG < 41bp 1 0.242587897897211 1 0.162488758563995 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16335468 chr17:16335471 synonymous SNV . 0 24 hm5C_associated_SNPs_20240 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_21401 DeepMRMD:1;iRNA_m5C:0.999536712157815 21402 chr3 49713566 49713566 1 + G A COAD 49713571 + 49713551 49713591 41 AAGCGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT AAGCGCCCCAAGGCCAAGTCCTTCTTTCAGACCAAAGCCTT < 41bp 1 0.185584742628792 1 0.0916586220264435 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713571 chr3:49713566 nonsynonymous SNV 0.985 1 16 hm5C_associated_SNPs_20241 0 0 1 0 2 Cytosol 1 0.500231608725014 1 0.999536782549971 hm5C_site_21402 DeepMRMD:1;iRNA_m5C:0.999536782549971 21403 chr1 22307561 22307561 1 + C T COAD 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGTGAGTACGACCGTGCTGTGAAGGAGGG < 41bp 1 0.398730251457939 1 0.487068176269531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307561 synonymous SNV . 0 15 hm5C_associated_SNPs_20242 0 0 0 0 1 unknown 1 0.500231636685988 1 0.999536726628024 hm5C_site_21403 DeepMRMD:1;iRNA_m5C:0.999536726628024 21404 chr1 22307561 22307561 1 + C T COAD 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGTGAGTACGACCGTGCTGTGAAGGAGGGCCC < 41bp 1 0.258387887033949 1 0.578733742237091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307561 synonymous SNV . 0 12 hm5C_associated_SNPs_20243 0 0 0 0 1 unknown 1 0.500231663758769 0.842532515525818 0.999536672482461 hm5C_site_21404 DeepMRMD:0.842532515525818;iRNA_m5C:0.999536672482461 21405 chr1 22307561 22307561 1 + C T COAD 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGTGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.547001582939934 1 0.101135909557343 experiment 0.905996834120132 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307561 synonymous SNV . 0 7 hm5C_associated_SNPs_20244 0 0 0 0 1 unknown 1 0.500231644344164 1 0.999536711311672 hm5C_site_21405 DeepMRMD:1;iRNA_m5C:0.999536711311672 21406 chr8 145727028 145727028 1 + C A COAD 145727024 + 145727004 145727044 41 GCTGAGCCCCCTGGACAGCACCACCCCCCACACCCTGGTCC GCTGAGCCCCCTGGACAGCACCACACCCCACACCCTGGTCC < 41bp 1 0.448217521697687 1 0.0655389428138733 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145727024 chr8:145727028 synonymous SNV . 0 25 hm5C_associated_SNPs_20245 0 0 1 0 0 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_21406 DeepMRMD:1;iRNA_m5C:0.99953671215782 21407 chr18 77895396 77895396 1 + C T COAD 77895411 + 77895391 77895431 41 TGCAACGAGCTCTTTCCGTCCAACGTCTACCAGGTCCACAT TGCAATGAGCTCTTTCCGTCCAACGTCTACCAGGTCCACAT < 41bp 1 0.477233339319394 1 0.357671350240707 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADNP2 ENSG00000101544 CDS Human protein_coding chr18:77895411 chr18:77895396 synonymous SNV . 0 6 hm5C_associated_SNPs_20246 0 0 1 0 0 Cytosol 1 0.500231643918789 1 0.999536712162422 hm5C_site_21407 DeepMRMD:1;iRNA_m5C:0.999536712162422 21408 chr12 104340405 104340405 1 + G A COAD 104340419 + 104340399 104340439 41 CTATGCGAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC CTATGCAAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC < 41bp 1 0.117938222734995 1 0.224143326282501 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340419 chr12:104340405 synonymous SNV . 0 7 hm5C_associated_SNPs_20247 0 0 1 0 2 Nucleus 1 0.500231646316652 1 0.999536707366696 hm5C_site_21408 DeepMRMD:1;iRNA_m5C:0.999536707366696 21409 chr17 61489398 61489398 1 + G A COAD 61489416 + 61489396 61489436 41 ACGTTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTG ACATTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTG < 41bp 1 0.333560741744543 1 0.134626418352127 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61489416 chr17:61489398 nonsynonymous SNV 0.996 2 3 hm5C_associated_SNPs_20248 0 0 1 0 2 Cytosol 1 0.500231643906727 1 0.999536712186546 hm5C_site_21409 DeepMRMD:1;iRNA_m5C:0.999536712186546 21410 chr17 21319339 21319339 1 + C T COAD 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGTGTGCGCGCAGCTCATCAAGCCGCGGG < 41bp 1 0.695784002231518 1 0.346387982368469 experiment 0.608431995536964 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319339 nonsynonymous SNV 0.971 5 17 hm5C_associated_SNPs_20249 0 0 0 0 0 unknown 1 0.500231643921131 1 0.999536712157739 hm5C_site_21410 DeepMRMD:1;iRNA_m5C:0.999536712157739 21411 chr11 61404333 61404333 1 + C T COAD 61404327 + 61404307 61404347 41 GGTGCTGATGGGCAAGAACGCCATGACGCGCAAGGCCATCC GGTGCTGATGGGCAAGAACGCCATGATGCGCAAGGCCATCC < 41bp 1 0.441218932677862 1 0.139575958251953 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404327 chr11:61404333 . . 0 27 hm5C_associated_SNPs_20250 0 0 0 0 0 unknown 1 0.500231643942263 1 0.999536712115473 hm5C_site_21411 DeepMRMD:1;iRNA_m5C:0.999536712115473 21412 chr19 33167258 33167258 1 + C T COAD 33167256 + 33167236 33167276 41 CTGGTGCTGACCGTCGGTGGCTCGGCGGACTCGCAGAACCT CTGGTGCTGACCGTCGGTGGCTTGGCGGACTCGCAGAACCT < 41bp 1 0.426185516986941 1 0.233231753110886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RGS9BP ENSG00000186326 CDS Human protein_coding chr19:33167256 chr19:33167258 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_20251 0 0 1 0 0 exosome 1 0.500231643922162 1 0.999536712155676 hm5C_site_21412 DeepMRMD:1;iRNA_m5C:0.999536712155676 21413 chr19 33167258 33167258 1 + C T COAD 33167261 + 33167241 33167281 41 GCTGACCGTCGGTGGCTCGGCGGACTCGCAGAACCTGCGGC GCTGACCGTCGGTGGCTTGGCGGACTCGCAGAACCTGCGGC < 41bp 1 0.67935123789524 1 0.426190584897995 experiment 0.641297524209521 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RGS9BP ENSG00000186326 CDS Human protein_coding chr19:33167261 chr19:33167258 nonsynonymous SNV 0.992 1 18 hm5C_associated_SNPs_20252 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_21413 DeepMRMD:1;iRNA_m5C:0.999536712157816 21414 chr2 209190006 209190006 1 + C T COAD 209190000 + 209189980 209190020 41 GTTTTTGTTTGTAGAACAAACCAAGACACTGATGTTTTTTG GTTTTTGTTTGTAGAACAAACCAAGATACTGATGTTTTTTG < 41bp 1 0.121222636481473 1 0.0904053151607513 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209190000 chr2:209190006 nonsynonymous SNV 0.965 4 27 hm5C_associated_SNPs_20253 0 0 1 0 1 Nucleus 1 0.500284965293665 1 0.999430069412669 hm5C_site_21414 DeepMRMD:1;iRNA_m5C:0.999430069412669 21415 chr1 180064846 180064846 1 + A G COAD 180064828 + 180064808 180064848 41 AAAAATAAGGCAGAAGAAACCATTGTACCTCTAATGGCAGA AAAAATAAGGCAGAAGAAACCATTGTACCTCTAATGGCGGA < 41bp 1 0.0935458128978939 1 0.40973624587059 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP350 ENSG00000135837 CDS Human protein_coding chr1:180064828 chr1:180064846 synonymous SNV . 0 39 hm5C_associated_SNPs_20254 0 0 0 0 0 Nucleus 1 0.500231664256502 1 0.999536671486996 hm5C_site_21415 DeepMRMD:1;iRNA_m5C:0.999536671486996 21416 chr19 39215150 39215150 1 + G A COAD 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGCGCCACCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC < 41bp 1 0.272062147695756 1 0.753510177135468 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215150 nonsynonymous SNV 0.997 1 8 hm5C_associated_SNPs_20256 0 0 1 0 2 Nucleus 1 0.500231643921092 0.492979645729064 0.999536712157815 hm5C_site_21416 DeepMRMD:0.492979645729064;iRNA_m5C:0.999536712157815 21417 chr19 39215150 39215150 1 + G A COAD 39215169 + 39215149 39215189 41 CGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT CACCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT < 41bp 1 0.234754892708547 1 0.0907601416110992 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215169 chr19:39215150 nonsynonymous SNV 0.997 1 2 hm5C_associated_SNPs_20257 0 0 1 0 2 Nucleus 1 0.500231643920355 1 0.999536712159291 hm5C_site_21417 DeepMRMD:1;iRNA_m5C:0.999536712159291 21418 chr19 30164902 30164902 1 + G A COAD 30164884 + 30164864 30164904 41 GGCGTGCTGACCAAAGAGTGCCGCAAGAAGGCCAAGCCGCG GGCGTGCTGACCAAAGAGTGCCGCAAGAAGGCCAAGCCACG < 41bp 1 0.279900650278282 1 0.0855860710144043 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLEKHF1 ENSG00000166289 CDS Human protein_coding chr19:30164884 chr19:30164902 synonymous SNV . 0 39 hm5C_associated_SNPs_20258 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21418 DeepMRMD:1;iRNA_m5C:0.999536712157815 21419 chr17 37676270 37676270 1 + T C COAD 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAAGCGGCGCACAGCTGAACAGACCCTACA < 41bp 1 0.191148507055652 1 0.105416268110275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676270 nonsynonymous SNV 0.995 4 19 hm5C_associated_SNPs_20259 0 0 1 0 1 Nucleus 1 0.500231801764898 1 0.999536396470205 hm5C_site_21419 DeepMRMD:1;iRNA_m5C:0.999536396470205 21420 chr7 4002325 4002325 1 + C T COAD 4002345 + 4002325 4002365 41 CCATCTCCATCAGCAGGCTCCAGAATCCTCGATACAAAGTG TCATCTCCATCAGCAGGCTCCAGAATCCTCGATACAAAGTG < 41bp 1 0.213274127268501 1 0.450427293777466 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4002345 chr7:4002325 nonsynonymous SNV 0.611 1 1 hm5C_associated_SNPs_20260 0 0 1 0 1 cytosol 1 0.500230324826521 1 0.999539350346957 hm5C_site_21420 DeepMRMD:1;iRNA_m5C:0.999539350346957 21421 chr11 61404330 61404330 1 + T C COAD 61404327 + 61404307 61404347 41 GGTGCTGATGGGCAAGAACGCCATGACGCGCAAGGCCATCC GGTGCTGATGGGCAAGAACGCCACGACGCGCAAGGCCATCC < 41bp 1 0.592387473403489 1 0.31259697675705 experiment 0.815225053193023 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404327 chr11:61404330 . . 0 24 hm5C_associated_SNPs_20261 0 0 0 0 0 unknown 1 0.500231643921139 1 0.999536712157722 hm5C_site_21421 DeepMRMD:1;iRNA_m5C:0.999536712157722 21422 chr6 31601226 31601226 1 + C T COAD 31601218 + 31601198 31601238 41 CCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTGGACCAAG CCCACCTCCCAGCAGTTCTGCTGTCTTCTGCCTGGACCAAG < 41bp 1 0.30637808319419 1 0.0874298810958862 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31601218 chr6:31601226 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_20262 0 0 1 0 1 Ribosome 1 0.500231671981401 1 0.999536656037199 hm5C_site_21422 DeepMRMD:1;iRNA_m5C:0.999536656037199 21423 chr7 75687295 75687295 1 + C T COAD 75687304 + 75687284 75687324 41 CAGGCATGACCCGGGACGACCTGTTCAACACCAATGCCACG CAGGCATGACCTGGGACGACCTGTTCAACACCAATGCCACG < 41bp 1 0.185380419897113 1 0.293315708637238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MDH2 ENSG00000146701 CDS Human protein_coding chr7:75687304 chr7:75687295 nonsynonymous SNV 0.966 5 12 hm5C_associated_SNPs_20263 0 0 1 0 1 Cytosol 1 0.500232015541096 1 0.999535968917809 hm5C_site_21423 DeepMRMD:1;iRNA_m5C:0.999535968917809 21424 chr1 12009947 12009947 1 + A G COAD 12009955 + 12009935 12009975 41 GAGGATCTGGTCATTCTCTTCGCAGACAGGTAGGTGGGTCA GAGGATCTGGTCGTTCTCTTCGCAGACAGGTAGGTGGGTCA < 41bp 1 0.628944182635848 1 0.868554592132568 experiment 0.742111634728303 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12009955 chr1:12009947 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_20264 0 0 1 0 1 Nucleus 1 0.50023164685277 0.262890815734864 0.99953670629446 hm5C_site_21424 DeepMRMD:0.262890815734864;iRNA_m5C:0.99953670629446 21425 chr6 157099202 157099202 1 + G A COAD 157099182 + 157099162 157099202 41 GCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGG GCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGA < 41bp 1 0.0779387249828721 1 0.455636471509933 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARID1B ENSG00000049618 CDS Human protein_coding chr6:157099182 chr6:157099202 nonsynonymous SNV 0.660 1 41 hm5C_associated_SNPs_20265 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21425 DeepMRMD:1;iRNA_m5C:0.999536712157815 21426 chr6 157099202 157099202 1 + G A COAD 157099183 + 157099163 157099203 41 CTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGGC CTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGAC < 41bp 1 0.383149945464544 1 0.474559366703033 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARID1B ENSG00000049618 CDS Human protein_coding chr6:157099183 chr6:157099202 nonsynonymous SNV 0.660 1 40 hm5C_associated_SNPs_20266 0 0 1 0 0 Ribosome 1 0.500231643920858 1 0.999536712158283 hm5C_site_21426 DeepMRMD:1;iRNA_m5C:0.999536712158283 21427 chr6 157099202 157099202 1 + G A COAD 157099185 + 157099165 157099205 41 GTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGGCAT GTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGACAT < 41bp 1 0.387484516868484 1 0.681771636009216 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARID1B ENSG00000049618 CDS Human protein_coding chr6:157099185 chr6:157099202 nonsynonymous SNV 0.660 1 38 hm5C_associated_SNPs_20267 0 0 1 0 0 Ribosome 1 0.500231643921092 0.636456727981568 0.999536712157815 hm5C_site_21427 DeepMRMD:0.636456727981568;iRNA_m5C:0.999536712157815 21428 chr6 157099202 157099202 1 + G A COAD 157099186 + 157099166 157099206 41 TCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGGCATC TCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGACATC < 41bp 1 0.428328229291394 1 0.547510921955109 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARID1B ENSG00000049618 CDS Human protein_coding chr6:157099186 chr6:157099202 nonsynonymous SNV 0.660 1 37 hm5C_associated_SNPs_20268 0 0 1 0 0 Ribosome 1 0.500231643921092 0.904978156089782 0.999536712157815 hm5C_site_21428 DeepMRMD:0.904978156089782;iRNA_m5C:0.999536712157815 21429 chr2 172951506 172951506 1 + G A COAD 172951509 + 172951489 172951529 41 CAGGCTTTGAACCGGAGGTTCCAGCAAACTCAGTACCTAGC CAGGCTTTGAACCGGAGATTCCAGCAAACTCAGTACCTAGC < 41bp 1 0.187101956463017 1 0.157639861106873 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLX1 ENSG00000144355 CDS Human protein_coding chr2:172951509 chr2:172951506 synonymous SNV . 0 18 hm5C_associated_SNPs_20269 0 0 0 0 1 exosome 1 0.500231643758315 1 0.99953671248337 hm5C_site_21429 DeepMRMD:1;iRNA_m5C:0.99953671248337 21430 chr7 77214878 77214878 1 + C T COAD 77214877 + 77214857 77214897 41 TAGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAG TAGATCATTGTAATGGCCTGCTGAGAATTTGAGATGGGAAG < 41bp 1 0.274276082835196 1 0.40167498588562 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214877 chr7:77214878 stopgain 1.000 1 22 hm5C_associated_SNPs_20270 0 0 1 1 1 Ribosome 1 0.500231643921599 1 0.999536712156802 hm5C_site_21430 DeepMRMD:1;iRNA_m5C:0.999536712156802 21431 chr3 47046765 47046765 1 + C T COAD 47046776 + 47046756 47046796 41 TACCTCATCCGCGTGGAGCCCTTCACCTCCCTGCACGTCCA TACCTCATCTGCGTGGAGCCCTTCACCTCCCTGCACGTCCA < 41bp 1 0.248230574792923 1 0.194359838962555 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47046776 chr3:47046765 nonsynonymous SNV 0.982 5 10 hm5C_associated_SNPs_20271 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21431 DeepMRMD:1;iRNA_m5C:0.999536712157815 21432 chr5 179146762 179146762 1 + C T COAD 179146752 + 179146732 179146772 41 TGATGAGCCTGAGTACGTACCTGATCCAGACGCAGAGAAAC TGATGAGCCTGAGTACGTACCTGATCCAGATGCAGAGAAAC < 41bp 1 0.380584226987507 1 0.0581400394439697 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146752 chr5:179146762 synonymous SNV . 0 31 hm5C_associated_SNPs_20272 0 0 1 0 2 Nucleus 1 0.500753979411167 1 0.998492041177666 hm5C_site_21432 DeepMRMD:1;iRNA_m5C:0.998492041177666 21433 chr5 179146762 179146762 1 + C T COAD 179146764 + 179146744 179146784 41 GTACGTACCTGATCCAGACGCAGAGAAACCTGAGGATTGGT GTACGTACCTGATCCAGATGCAGAGAAACCTGAGGATTGGT < 41bp 1 0.477032036977418 1 0.690922558307648 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179146764 chr5:179146762 synonymous SNV . 0 19 hm5C_associated_SNPs_20273 0 0 1 0 2 Nucleus 1 0.500452285113609 0.618154883384704 0.999095429772782 hm5C_site_21433 DeepMRMD:0.618154883384704;iRNA_m5C:0.999095429772782 21434 chr5 179146762 179146762 1 + C T COAD 179146773 + 179146753 179146793 41 TGATCCAGACGCAGAGAAACCTGAGGATTGGTAAGAACTTC TGATCCAGATGCAGAGAAACCTGAGGATTGGTAAGAACTTC < 41bp 1 0.69024785706616 1 0.362887024879456 experiment 0.619504285867679 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179146773 chr5:179146762 synonymous SNV . 0 10 hm5C_associated_SNPs_20274 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21434 DeepMRMD:1;iRNA_m5C:0.999536712157815 21435 chr5 156816258 156816258 1 + C T COAD 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTTCATGTTCGAGGTCATCCTGAC < 41bp 1 0.369536152042735 1 0.366831243038177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816258 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_20275 0 0 0 0 1 Cytosol 1 0.500231644565844 1 0.999536710868313 hm5C_site_21435 DeepMRMD:1;iRNA_m5C:0.999536710868313 21436 chr1 171519301 171519301 1 + T C COAD 171519315 + 171519295 171519335 41 TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTT TGGTTTCACTGAAGTGGTATCCAAAAAACAACAAAAACGTT < 41bp 1 0.0935775721244656 1 0.711390376091003 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171519315 chr1:171519301 synonymous SNV . 0 7 hm5C_associated_SNPs_20276 0 0 1 0 2 Cytosol 1 0.500139479405087 0.577219247817994 0.999721041189826 hm5C_site_21436 DeepMRMD:0.577219247817994;iRNA_m5C:0.999721041189826 21437 chr2 74086418 74086418 1 + A G COAD 74086431 + 74086411 74086451 41 AGTGTCGACCTACACACTCACTGCTCTTACCAGATGATGTT AGTGTCGGCCTACACACTCACTGCTCTTACCAGATGATGTT < 41bp 1 0.513596510359217 1 0.145746529102325 experiment 0.972806979281565 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74086431 chr2:74086418 nonsynonymous SNV 0.590 5 8 hm5C_associated_SNPs_20277 0 0 1 0 2 Ribosome 1 0.500231643921091 1 0.999536712157819 hm5C_site_21437 DeepMRMD:1;iRNA_m5C:0.999536712157819 21438 chr17 57644022 57644022 1 + T C COAD 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACCACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA < 41bp 1 0.110255316054699 1 0.0646267533302307 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644022 synonymous SNV . 0 7 hm5C_associated_SNPs_20278 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21438 DeepMRMD:1;iRNA_m5C:0.999536712157815 21439 chr17 21731052 21731052 1 + G T COAD 21731040 + 21731020 21731060 41 GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT GATAAAGAAGGCATCCCCCCCGACCAGCAGAGTCTCATCTT < 41bp 1 0.301015267006855 1 0.334654361009598 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731040 chr17:21731052 nonsynonymous SNV 0.928 2 33 hm5C_associated_SNPs_20279 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21439 DeepMRMD:1;iRNA_m5C:0.999536712157815 21440 chr14 35739797 35739797 1 + T C COAD 35739796 + 35739776 35739816 41 TTTCCAGGATCAAAACTAACCTTTCAGGTAATGGTACCTGT TTTCCAGGATCAAAACTAACCCTTCAGGTAATGGTACCTGT < 41bp 1 0.0286463761703007 1 0.0645766854286194 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA0391 ENSG00000100890;ENSG00000258790 CDS Human other chr14:35739796 chr14:35739797 nonsynonymous SNV 0.757 1 22 hm5C_associated_SNPs_20283 0 0 1 0 1 Endoplasmic reticulum 1 0.500469426954893 1 0.999061146090214 hm5C_site_21440 DeepMRMD:1;iRNA_m5C:0.999061146090214 21441 chr2 238944554 238944554 1 + A G COAD 238944540 + 238944520 238944560 41 ATCTTTTGAATTTTGATGATCCACTGAATATTGAAGCTGCA ATCTTTTGAATTTTGATGATCCACTGAATATTGAGGCTGCA < 41bp 1 0.102883303471584 1 0.0441645383834839 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2F ENSG00000184182;ENSG00000258984 CDS Human other chr2:238944540 chr2:238944554 synonymous SNV . 0 35 hm5C_associated_SNPs_20284 0 0 1 1 2 Ribosome 1 0.500240054993444 1 0.999519890013112 hm5C_site_21441 DeepMRMD:1;iRNA_m5C:0.999519890013112 21442 chr1 36028881 36028881 1 + G A COAD 36028874 + 36028854 36028894 41 GATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGT GATCCTGATCAAGGAAGGGGCCCCCTCACTTCTGTGCAAGT < 41bp 1 0.0528160344274274 1 0.108620882034302 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028874 chr1:36028881 synonymous SNV . 0 28 hm5C_associated_SNPs_20285 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643906049 1 0.999536712187902 hm5C_site_21442 DeepMRMD:1;iRNA_m5C:0.999536712187902 21443 chr1 36028881 36028881 1 + G A COAD 36028876 + 36028856 36028896 41 TCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGTAT TCCTGATCAAGGAAGGGGCCCCCTCACTTCTGTGCAAGTAT < 41bp 1 0.0184048387446868 1 0.0658325552940369 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028876 chr1:36028881 synonymous SNV . 0 26 hm5C_associated_SNPs_20286 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643903798 1 0.999536712192404 hm5C_site_21443 DeepMRMD:1;iRNA_m5C:0.999536712192404 21444 chr12 104340404 104340404 1 + C T COAD 104340419 + 104340399 104340439 41 CTATGCGAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC CTATGTGAGTCAGAAGAAAACATTTGAAATTAATCCCAGAC < 41bp 1 0.107311617177927 1 0.223862409591675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340419 chr12:104340404 nonsynonymous SNV 0.944 2 6 hm5C_associated_SNPs_20288 0 0 1 0 2 Nucleus 1 0.500231644632806 1 0.999536710734388 hm5C_site_21444 DeepMRMD:1;iRNA_m5C:0.999536710734388 21445 chr2 71795342 71795342 1 + G A COAD 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGGAACTGGGACACAACGGGCCTCACCTACCCCAAGTTTTC < 41bp 1 0.104549534295809 1 0.0532882809638977 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795342 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_20289 0 0 0 0 1 Nucleus 1 0.500231643918 1 0.999536712164 hm5C_site_21445 DeepMRMD:1;iRNA_m5C:0.999536712164 21446 chr5 76355504 76355504 1 + C T COAD 76355513 + 76355493 76355533 41 GAGCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACT GAGCTGGAAAATGTAGGGAGCAGGTTGGAAGTGAAGGAACT < 41bp 1 0.378704782602793 1 0.315804660320282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76355513 chr5:76355504 nonsynonymous SNV 0.991 4 12 hm5C_associated_SNPs_20291 0 0 1 0 2 Ribosome 1 0.500231643921066 1 0.999536712157868 hm5C_site_21446 DeepMRMD:1;iRNA_m5C:0.999536712157868 21447 chr15 69729055 69729055 1 + A G COAD 69729054 + 69729034 69729074 41 ATGATGATTGATGAGTTTAACAAACAATGTAAGGGCAAAAC ATGATGATTGATGAGTTTAACGAACAATGTAAGGGCAAAAC < 41bp 1 0.227814695618642 1 0.477668404579163 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69729054 chr15:69729055 nonsynonymous SNV 0.355 1 22 hm5C_associated_SNPs_20292 0 0 1 0 1 Nucleus 1 0.500231643935426 1 0.999536712129147 hm5C_site_21447 DeepMRMD:1;iRNA_m5C:0.999536712129147 21448 chr12 94072705 94072705 1 + G A COAD 94072701 + 94072681 94072721 41 TCAATGCTCAAACCACAGGCCTCCGGAAAACAATGCTCCTG TCAATGCTCAAACCACAGGCCTCCAGAAAACAATGCTCCTG < 41bp 1 0.672049717243772 1 0.927177786827087 experiment 0.655900565512456 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRADD ENSG00000169372 CDS Human protein_coding chr12:94072701 chr12:94072705 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_20293 0 0 1 0 0 Ribosome 1 0.50023139673147 0.145644426345826 0.999537206537061 hm5C_site_21448 DeepMRMD:0.145644426345826;iRNA_m5C:0.999537206537061 21449 chr12 94072705 94072705 1 + G A COAD 94072703 + 94072683 94072723 41 AATGCTCAAACCACAGGCCTCCGGAAAACAATGCTCCTGCT AATGCTCAAACCACAGGCCTCCAGAAAACAATGCTCCTGCT < 41bp 1 0.504743930704763 1 0.294438898563385 experiment 0.990512138590473 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRADD ENSG00000169372 CDS Human protein_coding chr12:94072703 chr12:94072705 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_20294 0 0 1 0 0 Ribosome 1 0.5002316289625 1 0.999536742075 hm5C_site_21449 DeepMRMD:1;iRNA_m5C:0.999536742075 21450 chr17 27011893 27011893 1 + G T COAD 27011913 + 27011893 27011933 41 GGTGAAGGAGAAGTGACAGACTTCCTTCGACTGCCCCATTT TGTGAAGGAGAAGTGACAGACTTCCTTCGACTGCCCCATTT < 41bp 1 0.354211639997321 1 0.0717877447605133 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011913 chr17:27011893 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_20295 0 0 1 0 1 Cytosol 1 0.500231639520112 1 0.999536720959776 hm5C_site_21450 DeepMRMD:1;iRNA_m5C:0.999536720959776 21451 chr14 56079139 56079139 1 + C T COAD 56079153 + 56079133 56079173 41 CCTGTGCTTGAAGAGCAGGTCATCAAAGAAAGTGACGCATC CCTGTGTTTGAAGAGCAGGTCATCAAAGAAAGTGACGCATC < 41bp 1 0.57087041252685 1 0.0694092214107513 experiment 0.8582591749463 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56079153 chr14:56079139 nonsynonymous SNV 0.051 1 7 hm5C_associated_SNPs_20296 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921057 1 0.999536712157887 hm5C_site_21451 DeepMRMD:1;iRNA_m5C:0.999536712157887 21452 chr2 202141605 202141605 1 + T C COAD 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTGTCTGATCACCAACAATCA < 41bp 1 0.24630830274723 1 0.152496874332428 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141605 nonsynonymous SNV 0.989 3 32 hm5C_associated_SNPs_20297 0 0 1 0 1 Nucleus 1 0.500231649673144 1 0.999536700653712 hm5C_site_21452 DeepMRMD:1;iRNA_m5C:0.999536700653712 21453 chr5 65321796 65321796 1 + G A COAD 65321797 + 65321777 65321817 41 ATAATTACTTACAGCAGTTGCCCCCAGAGGTAATGTATTTT ATAATTACTTACAGCAGTTACCCCCAGAGGTAATGTATTTT < 41bp 1 0.0523851579764549 1 0.0542656779289246 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ERBIN ENSG00000112851 CDS Human protein_coding chr5:65321797 chr5:65321796 synonymous SNV . 0 20 hm5C_associated_SNPs_20298 0 0 1 0 1 Nucleus 1 0.500231643924529 1 0.999536712150942 hm5C_site_21453 DeepMRMD:1;iRNA_m5C:0.999536712150942 21454 chr15 99671598 99671598 1 + C A COAD 99671610 + 99671590 99671630 41 GTGGATGCCGATCGGTTAGACCTGGAGGAGCTGAGCAAAGA GTGGATGCAGATCGGTTAGACCTGGAGGAGCTGAGCAAAGA < 41bp 1 0.173679147154349 1 0.198434233665466 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99671610 chr15:99671598 synonymous SNV . 0 9 hm5C_associated_SNPs_20299 0 0 0 0 0 exosome 1 0.50023164392111 1 0.99953671215778 hm5C_site_21454 DeepMRMD:1;iRNA_m5C:0.99953671215778 21455 chr11 45926273 45926273 1 + C T COAD 45926276 + 45926256 45926296 41 TTGTCACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGC TTGTCACCTGTAGATTGTCACCACCCGCCGGCTCACCGTGC < 41bp 1 0.0558214719953082 1 0.148487359285355 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926276 chr11:45926273 nonsynonymous SNV 0.988 1 18 hm5C_associated_SNPs_20300 0 0 0 0 1 Endoplasmic reticulum 1 0.500244216721024 1 0.999511566557952 hm5C_site_21455 DeepMRMD:1;iRNA_m5C:0.999511566557952 21456 chr11 45926273 45926273 1 + C T COAD 45926280 + 45926260 45926300 41 CACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGCACTT CACCTGTAGATTGTCACCACCCGCCGGCTCACCGTGCACTT < 41bp 1 0.101916640250703 1 0.0335186123847961 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926280 chr11:45926273 nonsynonymous SNV 0.988 1 14 hm5C_associated_SNPs_20301 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643913033 1 0.999536712173935 hm5C_site_21456 DeepMRMD:1;iRNA_m5C:0.999536712173935 21457 chr11 45926273 45926273 1 + C T COAD 45926291 + 45926271 45926311 41 TGCCACCACCCGCCGGCTCACCGTGCACTTTAACCCGCCCT TGTCACCACCCGCCGGCTCACCGTGCACTTTAACCCGCCCT < 41bp 1 0.155005126746354 1 0.320929080247879 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926291 chr11:45926273 nonsynonymous SNV 0.988 1 3 hm5C_associated_SNPs_20302 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_21457 DeepMRMD:1;iRNA_m5C:0.999536712157814 21458 chr11 64802605 64802605 1 + G A COAD 64802597 + 64802577 64802617 41 TCCTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGAC TCCTGCCACCCCCTCTGATCCCCACCCCACCCCCTGATGAC < 41bp 1 0.100900695547811 1 0.045934796333313 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802597 chr11:64802605 synonymous SNV . 0 29 hm5C_associated_SNPs_20303 0 0 1 0 1 Ribosome 1 0.500231643921916 1 0.999536712156168 hm5C_site_21458 DeepMRMD:1;iRNA_m5C:0.999536712156168 21459 chr11 64802605 64802605 1 + G A COAD 64802598 + 64802578 64802618 41 CCTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACC CCTGCCACCCCCTCTGATCCCCACCCCACCCCCTGATGACC < 41bp 1 0.0777654666138144 1 0.170918166637421 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802598 chr11:64802605 synonymous SNV . 0 28 hm5C_associated_SNPs_20304 0 0 1 0 1 Ribosome 1 0.500231707412695 1 0.99953658517461 hm5C_site_21459 DeepMRMD:1;iRNA_m5C:0.99953658517461 21460 chr11 64802605 64802605 1 + G A COAD 64802599 + 64802579 64802619 41 CTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCC CTGCCACCCCCTCTGATCCCCACCCCACCCCCTGATGACCC < 41bp 1 0.202712787404237 1 0.2653848528862 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802599 chr11:64802605 synonymous SNV . 0 27 hm5C_associated_SNPs_20305 0 0 1 0 1 Ribosome 1 0.500231643921113 1 0.999536712157774 hm5C_site_21460 DeepMRMD:1;iRNA_m5C:0.999536712157774 21461 chr11 64802605 64802605 1 + G A COAD 64802601 + 64802581 64802621 41 GCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCC GCCACCCCCTCTGATCCCCACCCCACCCCCTGATGACCCCC < 41bp 1 0.282346287865061 1 0.576901078224182 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802601 chr11:64802605 synonymous SNV . 0 25 hm5C_associated_SNPs_20306 0 0 1 0 1 Ribosome 1 0.500231643921535 0.846197843551636 0.99953671215693 hm5C_site_21461 DeepMRMD:0.846197843551636;iRNA_m5C:0.99953671215693 21462 chr11 64802605 64802605 1 + G A COAD 64802602 + 64802582 64802622 41 CCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCCG CCACCCCCTCTGATCCCCACCCCACCCCCTGATGACCCCCG < 41bp 1 0.0536135867129301 1 0.579707980155945 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802602 chr11:64802605 synonymous SNV . 0 24 hm5C_associated_SNPs_20307 0 0 1 0 1 Ribosome 1 0.500231642517852 0.84058403968811 0.999536714964297 hm5C_site_21462 DeepMRMD:0.84058403968811;iRNA_m5C:0.999536714964297 21463 chr11 64802605 64802605 1 + G A COAD 64802603 + 64802583 64802623 41 CACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCCGG CACCCCCTCTGATCCCCACCCCACCCCCTGATGACCCCCGG < 41bp 1 0.0926727625896077 1 0.535406112670898 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802603 chr11:64802605 synonymous SNV . 0 23 hm5C_associated_SNPs_20308 0 0 1 0 1 Ribosome 1 0.500231643922194 0.929187774658204 0.999536712155612 hm5C_site_21463 DeepMRMD:0.929187774658204;iRNA_m5C:0.999536712155612 21464 chr11 64802605 64802605 1 + G A COAD 64802604 + 64802584 64802624 41 ACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCCGGC ACCCCCTCTGATCCCCACCCCACCCCCTGATGACCCCCGGC < 41bp 1 0.197577854980612 1 0.46421292424202 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802604 chr11:64802605 synonymous SNV . 0 22 hm5C_associated_SNPs_20309 0 0 1 0 1 Ribosome 1 0.500231642841111 1 0.999536714317778 hm5C_site_21464 DeepMRMD:1;iRNA_m5C:0.999536714317778 21465 chr19 21301012 21301012 1 + T C COAD 21300992 + 21300972 21301012 41 TTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT TTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACC < 41bp 1 0.295197106047606 1 0.10282889008522 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300992 chr19:21301012 synonymous SNV . 0 41 hm5C_associated_SNPs_20310 0 0 1 0 0 Cytosol 1 0.500231643921069 1 0.999536712157862 hm5C_site_21465 DeepMRMD:1;iRNA_m5C:0.999536712157862 21466 chr19 21301012 21301012 1 + T C COAD 21300996 + 21300976 21301016 41 GCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGA GCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACCTTGA < 41bp 1 0.202515561357639 1 0.0566995143890381 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300996 chr19:21301012 synonymous SNV . 0 37 hm5C_associated_SNPs_20311 0 0 1 0 0 Cytosol 1 0.500231643897635 1 0.999536712204729 hm5C_site_21466 DeepMRMD:1;iRNA_m5C:0.999536712204729 21467 chr19 21301012 21301012 1 + T C COAD 21300997 + 21300977 21301017 41 CAGGGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGAG CAGGGCATGGTGGCTCATGCCTGTAATCCCAACACCTTGAG < 41bp 1 0.652581207702317 1 0.0907196402549744 experiment 0.694837584595365 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300997 chr19:21301012 synonymous SNV . 0 36 hm5C_associated_SNPs_20312 0 0 1 0 0 Cytosol 1 0.500231634161033 1 0.999536731677933 hm5C_site_21467 DeepMRMD:1;iRNA_m5C:0.999536731677933 21468 chr19 21301012 21301012 1 + T C COAD 21301004 + 21300984 21301024 41 TGGTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTA TGGTGGCTCATGCCTGTAATCCCAACACCTTGAGAGGACTA < 41bp 1 0.465025209102292 1 0.182626783847809 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301004 chr19:21301012 synonymous SNV . 0 29 hm5C_associated_SNPs_20313 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21468 DeepMRMD:1;iRNA_m5C:0.999536712157815 21469 chr19 21301012 21301012 1 + T C COAD 21301005 + 21300985 21301025 41 GGTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTAG GGTGGCTCATGCCTGTAATCCCAACACCTTGAGAGGACTAG < 41bp 1 0.0718218381280524 1 0.160542517900467 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301005 chr19:21301012 synonymous SNV . 0 28 hm5C_associated_SNPs_20314 0 0 1 0 0 Cytosol 1 0.500249744356291 1 0.999500511287418 hm5C_site_21469 DeepMRMD:1;iRNA_m5C:0.999500511287418 21470 chr19 21301012 21301012 1 + T C COAD 21301006 + 21300986 21301026 41 GTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTAGG GTGGCTCATGCCTGTAATCCCAACACCTTGAGAGGACTAGG < 41bp 1 0.589978526125787 1 0.306941360235214 experiment 0.820042947748426 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301006 chr19:21301012 synonymous SNV . 0 27 hm5C_associated_SNPs_20315 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21470 DeepMRMD:1;iRNA_m5C:0.999536712157815 21471 chrX 47518322 47518322 1 + G A COAD 47518340 - 47518320 47518360 41 GGTCTTCCCCCTCCCCACTCCCCAGGAGCCCATCATGGCGA GGTCTTCCCCCTCCCCACTCCCCAGGAGCCCATCATGGTGA < 41bp 1 0.426815257173605 1 0.511027812957764 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UXT ENSG00000126756 CDS Human protein_coding chrX:47518340 chrX:47518322 nonsynonymous SNV 0.999 1 39 hm5C_associated_SNPs_20316 0 0 1 0 2 Ribosome 1 0.500231643930679 0.977944374084472 0.999536712138642 hm5C_site_21471 DeepMRMD:0.977944374084472;iRNA_m5C:0.999536712138642 21472 chr14 35579797 35579797 1 + T C COAD 35579783 - 35579763 35579803 41 ATTAAGAGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA ATTAAGGGAGGAATCAAGAGCTGTCTTTCTACAAAGAAAAA < 41bp 1 0.216949184499864 1 0.126964718103409 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP2R3C ENSG00000092020 CDS Human protein_coding chr14:35579783 chr14:35579797 synonymous SNV . 0 7 hm5C_associated_SNPs_20317 0 0 1 0 2 chromatin 1 0.500231643920998 1 0.999536712158004 hm5C_site_21472 DeepMRMD:1;iRNA_m5C:0.999536712158004 21473 chr22 19492973 19492973 1 + G A COAD 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CGGAACGAGGATGAGGAGAACACACTCTCCATGGACTGCAC < 41bp 1 0.42057121455218 1 0.100354731082916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492973 nonsynonymous SNV 0.320 2 31 hm5C_associated_SNPs_20318 0 0 1 0 2 Ribosome 1 0.500231328395066 1 0.999537343209867 hm5C_site_21473 DeepMRMD:1;iRNA_m5C:0.999537343209867 21474 chr17 18167942 18167942 1 + G A COAD 18167953 + 18167933 18167973 41 TGCTCATCGGCAGCCTGGAGCAGGCCAGCCTGCCCTGCCAC TGCTCATCGACAGCCTGGAGCAGGCCAGCCTGCCCTGCCAC < 41bp 1 0.583727370733532 1 0.867772936820984 experiment 0.832545258532937 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MIEF2 ENSG00000177427 CDS Human protein_coding chr17:18167953 chr17:18167942 nonsynonymous SNV 0.449 0 10 hm5C_associated_SNPs_20319 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643918944 0.264454126358032 0.999536712162112 hm5C_site_21474 DeepMRMD:0.264454126358032;iRNA_m5C:0.999536712162112 21475 chr16 4902929 4902929 1 + C T COAD 4902930 + 4902910 4902950 41 TTGGTAGCCATGTCGGAGCCCCACAGGGTCCAGTTCACCTC TTGGTAGCCATGTCGGAGCTCCACAGGGTCCAGTTCACCTC < 41bp 1 0.435906320574566 1 0.417858600616455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN1 ENSG00000118900 CDS Human protein_coding chr16:4902930 chr16:4902929 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_20320 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21475 DeepMRMD:1;iRNA_m5C:0.999536712157815 21476 chr21 45736382 45736382 1 + C T COAD 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGATGCCCTCTGCCTTCGACCGGATC < 41bp 1 0.0818261014507796 1 0.0711767077445984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736382 nonsynonymous SNV 0.394 4 19 hm5C_associated_SNPs_20321 0 0 1 0 2 Ribosome 1 0.50023164479079 1 0.999536710418419 hm5C_site_21476 DeepMRMD:1;iRNA_m5C:0.999536710418419 21477 chr21 45736382 45736382 1 + C T COAD 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGATGCCCTCTGCCTTCGACCGGATCC < 41bp 1 0.114063583481054 1 0.0476594567298889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736382 nonsynonymous SNV 0.394 4 18 hm5C_associated_SNPs_20322 0 0 1 0 2 Ribosome 1 0.500231643918113 1 0.999536712163774 hm5C_site_21477 DeepMRMD:1;iRNA_m5C:0.999536712163774 21478 chr21 45736382 45736382 1 + C T COAD 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGATGCCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.428704248943339 1 0.265622556209564 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736382 nonsynonymous SNV 0.394 4 17 hm5C_associated_SNPs_20323 0 0 1 0 2 Ribosome 1 0.500232072096115 1 0.99953585580777 hm5C_site_21478 DeepMRMD:1;iRNA_m5C:0.99953585580777 21479 chr17 79414120 79414120 1 + C T COAD 79414114 + 79414094 79414134 41 GGCCTGGGCTTCTCCCTACCCTCAGACGTGCACTCTTCTAA GGCCTGGGCTTCTCCCTACCCTCAGATGTGCACTCTTCTAA < 41bp 1 0.398886823535925 1 0.411034524440765 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79414114 chr17:79414120 synonymous SNV . 0 27 hm5C_associated_SNPs_20324 0 0 1 0 1 chromatin 1 0.500231643921088 1 0.999536712157824 hm5C_site_21479 DeepMRMD:1;iRNA_m5C:0.999536712157824 21480 chr2 47205968 47205968 1 + G A COAD 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTCGAGGCATCTGAAAGGCTATCACCCGCTT < 41bp 1 0.611246755052652 1 0.854187488555908 experiment 0.777506489894697 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205968 nonsynonymous SNV 0.010 0 31 hm5C_associated_SNPs_20325 0 0 1 0 2 Nucleus 1 0.500231533849954 0.291625022888184 0.999536932300092 hm5C_site_21480 DeepMRMD:0.291625022888184;iRNA_m5C:0.999536932300092 21481 chr2 113332840 113332840 1 + G A COAD 113332847 + 113332827 113332867 41 GAGAGGTTATATAGTGGCATCAGTGGGCTAGAACTGGAAGC GAGAGGTTATATAATGGCATCAGTGGGCTAGAACTGGAAGC < 41bp 1 0.259938935183819 1 0.453829765319824 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113332847 chr2:113332840 nonsynonymous SNV 0.994 4 14 hm5C_associated_SNPs_20326 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_21481 DeepMRMD:1;iRNA_m5C:0.999536712157814 21482 chr17 38318158 38318158 1 + C T COAD 38318147 + 38318127 38318167 41 GCACTGTGACTGGAGAGAGGCAAAGTGGGGACGGACAGGTT GCACTGTGACTGGAGAGAGGCAAAGTGGGGATGGACAGGTT < 41bp 1 0.576089849889054 1 0.74694299697876 experiment 0.847820300221893 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318147 chr17:38318158 synonymous SNV . 0 32 hm5C_associated_SNPs_20327 0 0 1 0 1 Ribosome 1 0.500231639450474 0.50611400604248 0.999536721099052 hm5C_site_21482 DeepMRMD:0.50611400604248;iRNA_m5C:0.999536721099052 21483 chr13 115090562 115090562 1 + G A COAD 115090577 + 115090557 115090597 41 CCAGTGTCTCCAGAGCTTCGCAAACCCGGCCCACCACTATC CCAGTATCTCCAGAGCTTCGCAAACCCGGCCCACCACTATC < 41bp 1 0.248976956711225 1 0.234985828399658 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115090577 chr13:115090562 synonymous SNV . 0 6 hm5C_associated_SNPs_20328 0 0 1 0 0 nucleus 1 0.500231649556681 1 0.999536700886639 hm5C_site_21483 DeepMRMD:1;iRNA_m5C:0.999536700886639 21484 chr4 126238149 126238149 1 + G T COAD 126238148 + 126238128 126238168 41 GACATCACCCTGAACCCGAGCGGCGAGGGAGCGTTCCTGCA GACATCACCCTGAACCCGAGCTGCGAGGGAGCGTTCCTGCA < 41bp 1 0.361693510444356 1 0.180052101612091 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126238148 chr4:126238149 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_20329 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157812 hm5C_site_21484 DeepMRMD:1;iRNA_m5C:0.999536712157812 21485 chr16 83251054 83251054 1 + C T COAD 83251057 + 83251037 83251077 41 AATGAGAACACAGGGAGCGTCTCCGTGACACGGACCTTGGA AATGAGAACACAGGGAGTGTCTCCGTGACACGGACCTTGGA < 41bp 1 0.525910486562052 1 0.936938524246216 experiment 0.948179026875897 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:83251057 chr16:83251054 synonymous SNV . 0 18 hm5C_associated_SNPs_20330 0 0 0 0 1 Nucleus 1 0.500231643355143 0.126122951507568 0.999536713289713 hm5C_site_21485 DeepMRMD:0.126122951507568;iRNA_m5C:0.999536713289713 21486 chr19 42793140 42793140 1 + T C COAD 42793148 + 42793128 42793168 41 GCTACACACAGTTGGGGGACCTGGCTCAGCCCGGCCCCGAG GCTACACACAGTCGGGGGACCTGGCTCAGCCCGGCCCCGAG < 41bp 1 0.614506594247959 1 0.845488011837006 experiment 0.770986811504083 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42793148 chr19:42793140 synonymous SNV . 0 13 hm5C_associated_SNPs_20331 0 0 1 0 0 Cytosol 1 0.500231643923723 0.309023976325988 0.999536712152554 hm5C_site_21486 DeepMRMD:0.309023976325988;iRNA_m5C:0.999536712152554 21487 chr4 6925431 6925431 1 + C T COAD 6925415 + 6925395 6925435 41 CGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTGCGCGC CGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTGTGCGC < 41bp 1 0.0209833588063879 1 0.0247748494148254 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:6925415 chr4:6925431 synonymous SNV . 0 37 hm5C_associated_SNPs_20332 0 0 1 0 0 Cytosol 1 0.500231650271643 1 0.999536699456715 hm5C_site_21487 DeepMRMD:1;iRNA_m5C:0.999536699456715 21488 chr20 32665039 32665039 1 + C T COAD 32665025 + 32665005 32665045 41 ACGACGGCGATGAGGAAGGGCTCCTGACACACAGCGAGGAA ACGACGGCGATGAGGAAGGGCTCCTGACACACAGTGAGGAA < 41bp 1 0.526738015212847 1 0.204658627510071 experiment 0.946523969574305 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665025 chr20:32665039 synonymous SNV . 0 35 hm5C_associated_SNPs_20333 0 0 1 0 1 Cytosol 1 0.500231643922089 1 0.999536712155822 hm5C_site_21488 DeepMRMD:1;iRNA_m5C:0.999536712155822 21489 chr20 32665039 32665039 1 + C T COAD 32665027 + 32665007 32665047 41 GACGGCGATGAGGAAGGGCTCCTGACACACAGCGAGGAAGA GACGGCGATGAGGAAGGGCTCCTGACACACAGTGAGGAAGA < 41bp 1 0.525806496887512 1 0.130016654729843 experiment 0.948387006224977 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665027 chr20:32665039 synonymous SNV . 0 33 hm5C_associated_SNPs_20334 0 0 1 0 1 Cytosol 1 0.500231643912712 1 0.999536712174577 hm5C_site_21489 DeepMRMD:1;iRNA_m5C:0.999536712174577 21490 chr20 32665039 32665039 1 + C T COAD 32665036 + 32665016 32665056 41 GAGGAAGGGCTCCTGACACACAGCGAGGAAGAGCTGGTGAG GAGGAAGGGCTCCTGACACACAGTGAGGAAGAGCTGGTGAG < 41bp 1 0.697211950338757 1 0.410638839006424 experiment 0.605576099322487 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665036 chr20:32665039 synonymous SNV . 0 24 hm5C_associated_SNPs_20336 0 0 1 0 1 Cytosol 1 0.500231643924323 1 0.999536712151355 hm5C_site_21490 DeepMRMD:1;iRNA_m5C:0.999536712151355 21491 chr3 52237926 52237926 1 + G A COAD 52237938 + 52237918 52237958 41 TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAAC TGAAAACCAATGGAGGGGATCCCAGTGGACTGCTGAAGAAC < 41bp 1 0.310895163737215 1 0.156965434551239 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52237938 chr3:52237926 nonsynonymous SNV 0.190 1 9 hm5C_associated_SNPs_20337 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21491 DeepMRMD:1;iRNA_m5C:0.999536712157815 21492 chr12 49888628 49888628 1 + C T COAD 49888623 + 49888603 49888643 41 TTCAAGAGGAACAGTCTGCGCCTTCCTCAGAGAAAGGTGGT TTCAAGAGGAACAGTCTGCGCCTTCTTCAGAGAAAGGTGGT < 41bp 1 0.0176944499871742 1 0.087238997220993 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATS2 ENSG00000123352 CDS Human protein_coding chr12:49888623 chr12:49888628 synonymous SNV . 0 26 hm5C_associated_SNPs_20338 0 0 1 0 0 chromatin 1 0.500231643921097 1 0.999536712157806 hm5C_site_21492 DeepMRMD:1;iRNA_m5C:0.999536712157806 21493 chr9 96422668 96422668 1 + C A COAD 96422648 + 96422628 96422668 41 AAACTGTGAAGATGCCCAAGCCATCCAAAATCCCCAAGCCC AAACTGTGAAGATGCCCAAGCCATCCAAAATCCCCAAGCCA < 41bp 1 0.019745375141468 1 0.17227503657341 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96422648 chr9:96422668 synonymous SNV . 0 41 hm5C_associated_SNPs_20339 0 0 0 0 0 chromatin 1 0.500231648174279 1 0.999536703651442 hm5C_site_21493 DeepMRMD:1;iRNA_m5C:0.999536703651442 21494 chr9 96422668 96422668 1 + C A COAD 96422652 + 96422632 96422672 41 TGTGAAGATGCCCAAGCCATCCAAAATCCCCAAGCCCCCGA TGTGAAGATGCCCAAGCCATCCAAAATCCCCAAGCCACCGA < 41bp 1 0.461797233333225 1 0.629469156265259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96422652 chr9:96422668 synonymous SNV . 0 37 hm5C_associated_SNPs_20340 0 0 0 0 0 chromatin 1 0.500231637811407 0.741061687469482 0.999536724377185 hm5C_site_21494 DeepMRMD:0.741061687469482;iRNA_m5C:0.999536724377185 21495 chr15 57554304 57554304 1 + C T COAD 57554318 + 57554298 57554338 41 ACTCATCGGGAAGACTCTGTCAGTCTCAATGGCAATCATTC ACTCATTGGGAAGACTCTGTCAGTCTCAATGGCAATCATTC < 41bp 1 0.207275055842216 1 0.258539855480194 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554318 chr15:57554304 nonsynonymous SNV 0.998 3 7 hm5C_associated_SNPs_20341 0 0 1 0 1 Cytosol 1 0.500232118412021 1 0.999535763175958 hm5C_site_21495 DeepMRMD:1;iRNA_m5C:0.999535763175958 21496 chr4 144336813 144336813 1 + G T COAD 144336803 + 144336783 144336823 41 AAAAAAGAGTTTGAAAACAGCTACATTTTTGATATCAACAC AAAAAAGAGTTTGAAAACAGCTACATTTTTTATATCAACAC < 41bp 1 0.563073982691976 1 0.340096592903137 experiment 0.873852034616047 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144336803 chr4:144336813 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_20342 0 0 1 0 0 chromatin 1 0.50028743330455 1 0.9994251333909 hm5C_site_21496 DeepMRMD:1;iRNA_m5C:0.9994251333909 21497 chr13 27216439 27216439 1 + G A COAD 27216436 + 27216416 27216456 41 AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAG AGTGAAGAGGAACATTGAGCCCCAGCACTTGTGCCGGGGAG < 41bp 1 0.286057327431301 1 0.411589354276657 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216436 chr13:27216439 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_20343 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21497 DeepMRMD:1;iRNA_m5C:0.999536712157815 21498 chr13 27216439 27216439 1 + G A COAD 27216437 + 27216417 27216457 41 GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGC GTGAAGAGGAACATTGAGCCCCAGCACTTGTGCCGGGGAGC < 41bp 1 0.137904988470083 1 0.496980339288712 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216437 chr13:27216439 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_20344 0 0 1 0 1 cytosol 1 0.500232200559404 1 0.999535598881192 hm5C_site_21498 DeepMRMD:1;iRNA_m5C:0.999535598881192 21499 chr13 27216439 27216439 1 + G A COAD 27216438 + 27216418 27216458 41 TGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCT TGAAGAGGAACATTGAGCCCCAGCACTTGTGCCGGGGAGCT < 41bp 1 0.514121038360233 1 0.475714147090912 experiment 0.971757923279533 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216438 chr13:27216439 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_20345 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21499 DeepMRMD:1;iRNA_m5C:0.999536712157815 21500 chr13 27216439 27216439 1 + G A COAD 27216441 + 27216421 27216461 41 AGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCTCTG AGAGGAACATTGAGCCCCAGCACTTGTGCCGGGGAGCTCTG < 41bp 1 0.269299401409525 1 0.0953908264636993 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216441 chr13:27216439 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_20346 0 0 1 0 1 cytosol 1 0.500231645905943 1 0.999536708188115 hm5C_site_21500 DeepMRMD:1;iRNA_m5C:0.999536708188115 21501 chr17 79668137 79668137 1 + G A COAD 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATCGCAGGGCAGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.176704058211066 1 0.35558420419693 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668137 synonymous SNV . 0 10 hm5C_associated_SNPs_20348 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21501 DeepMRMD:1;iRNA_m5C:0.999536712157815 21502 chr1 151237890 151237890 1 + G T COAD 151237878 + 151237858 151237898 41 TTTCCTCCCCAGGAGGTGAACACAGAAAAGCTGACAGCCTT TTTCCTCCCCAGGAGGTGAACACAGAAAAGCTTACAGCCTT < 41bp 1 0.670454026644106 1 0.391178101301193 experiment 0.659091946711787 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237878 chr1:151237890 synonymous SNV . 0 33 hm5C_associated_SNPs_20349 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_21502 DeepMRMD:1;iRNA_m5C:0.999536712157815 21503 chrX 70517238 70517238 1 + C T COAD 70517240 + 70517220 70517260 41 TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGAT TTTTTAGATTTGATGAGGTGCCAAGAAGAACTTCGGAGGAT < 41bp 1 0.156609704190935 1 0.209668815135956 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517240 chrX:70517238 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_20350 0 0 1 0 2 Nucleus 1 0.500231643921094 1 0.999536712157813 hm5C_site_21503 DeepMRMD:1;iRNA_m5C:0.999536712157813 21504 chrX 70517238 70517238 1 + C T COAD 70517253 + 70517233 70517273 41 TGAGGCGCCAAGAAGAACTTCGGAGGATGGAAGAGCTGCAC TGAGGTGCCAAGAAGAACTTCGGAGGATGGAAGAGCTGCAC < 41bp 1 0.66215627730128 1 0.837612211704254 experiment 0.675687445397441 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517253 chrX:70517238 nonsynonymous SNV 0.998 2 6 hm5C_associated_SNPs_20352 0 0 1 0 2 Nucleus 1 0.500230088543585 0.324775576591492 0.99953982291283 hm5C_site_21504 DeepMRMD:0.324775576591492;iRNA_m5C:0.99953982291283 21505 chr11 73068163 73068163 1 + C T COAD 73068165 + 73068145 73068185 41 AAGTCAGGCTCCCTGCGGCGCAGCTCCATGAGCCTGTGAGT AAGTCAGGCTCCCTGCGGTGCAGCTCCATGAGCCTGTGAGT < 41bp 1 0.110406832491195 1 0.0318382978439331 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73068165 chr11:73068163 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_20353 0 0 1 0 2 Cytosol 1 0.500231643921086 1 0.999536712157827 hm5C_site_21505 DeepMRMD:1;iRNA_m5C:0.999536712157827 21506 chr12 112926260 112926260 1 + C T COAD 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCTGGACAGGGACGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.147707421963071 1 0.022661954164505 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926260 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_20354 0 0 1 0 2 Ribosome 1 0.500231638884533 1 0.999536722230934 hm5C_site_21506 DeepMRMD:1;iRNA_m5C:0.999536722230934 21507 chr3 10123065 10123065 1 + A G COAD 10123048 + 10123028 10123068 41 AGTGTTTAGCTGCTGAGAATCACGGTGTAGTTGATGGACCA AGTGTTTAGCTGCTGAGAATCACGGTGTAGTTGATGGGCCA < 41bp 1 0.687113329835146 1 0.851265788078308 experiment 0.625773340329707 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10123048 chr3:10123065 synonymous SNV . 0 38 hm5C_associated_SNPs_20355 0 0 1 0 1 Cytosol 1 0.500231643967963 0.297468423843384 0.999536712064074 hm5C_site_21507 DeepMRMD:0.297468423843384;iRNA_m5C:0.999536712064074 21508 chrX 105855866 105855866 1 + A C COAD 105855849 + 105855829 105855869 41 CCAGGAGAAACCAGAGAGGCCTTTAAGAGGCGGGAAGAGTC CCAGGAGAAACCAGAGAGGCCTTTAAGAGGCGGGAAGCGTC < 41bp 1 0.241011602969578 1 0.0947081446647644 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105855849 chrX:105855866 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_20356 0 0 0 0 1 nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_21508 DeepMRMD:1;iRNA_m5C:0.999536712157815 21509 chr19 38780810 38780810 1 + G A COAD 38780801 + 38780781 38780821 41 CACTGGGCCTTGCCGTGCATCCTTCCCACGCTGGTACTTTG CACTGGGCCTTGCCGTGCATCCTTCCCACACTGGTACTTTG < 41bp 1 0.0149712939339739 1 0.0782611966133118 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPINT2 ENSG00000167642;ENSG00000267748 CDS Human other chr19:38780801 chr19:38780810 nonsynonymous SNV 0.981 4 30 hm5C_associated_SNPs_20357 0 0 1 0 1 Ribosome 1 0.500231635146512 1 0.999536729706976 hm5C_site_21509 DeepMRMD:1;iRNA_m5C:0.999536729706976 21510 chr1 39876796 39876796 1 + A G COAD 39876777 + 39876757 39876797 41 AAGCAGCACCCCCTTGGGGACACAGCCTGCACTGTGGAAAT AAGCAGCACCCCCTTGGGGACACAGCCTGCACTGTGGAAGT < 41bp 1 0.117237115331198 1 0.154233306646347 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA0754 ENSG00000255103 CDS Human other chr1:39876777 chr1:39876796 nonsynonymous SNV 0.990 0 40 hm5C_associated_SNPs_20358 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21510 DeepMRMD:1;iRNA_m5C:0.999536712157815 21511 chr19 36594064 36594064 1 + G T COAD 36594068 + 36594048 36594088 41 GTGCCTGCAGGTCCTCGCTGCAGGGAAGGCTGAAGAGACCC GTGCCTGCAGGTCCTCTCTGCAGGGAAGGCTGAAGAGACCC < 41bp 1 0.65206291861407 1 0.85818076133728 experiment 0.695874162771861 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594068 chr19:36594064 nonsynonymous SNV 0.015 0 17 hm5C_associated_SNPs_20359 0 0 1 0 2 Nucleus 1 0.50023164392109 0.28363847732544 0.99953671215782 hm5C_site_21511 DeepMRMD:0.28363847732544;iRNA_m5C:0.99953671215782 21512 chr7 150761824 150761824 1 + G A COAD 150761806 + 150761786 150761826 41 GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCATC < 41bp 1 0.55175495202526 1 0.439953625202179 experiment 0.896490095949479 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761806 chr7:150761824 synonymous SNV . 0 39 hm5C_associated_SNPs_20360 0 0 1 0 1 Ribosome 1 0.500231643921105 1 0.99953671215779 hm5C_site_21512 DeepMRMD:1;iRNA_m5C:0.99953671215779 21513 chr19 11141504 11141504 1 + C T COAD 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGGGTTCGGCCTGAACCTCCAGTCGGC < 41bp 1 0.46091602095854 1 0.742279052734375 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141504 nonsynonymous SNV 0.981 4 19 hm5C_associated_SNPs_20361 0 0 1 0 2 Nucleus 1 0.500231643921092 0.51544189453125 0.999536712157815 hm5C_site_21513 DeepMRMD:0.51544189453125;iRNA_m5C:0.999536712157815 21514 chr16 1818241 1818241 1 + G T COAD 1818253 + 1818233 1818273 41 CCCGTCCCGGGGGCATCATCCACGTGTATGGCGATGACAGC CCCGTCCCTGGGGCATCATCCACGTGTATGGCGATGACAGC < 41bp 1 0.472304644992073 1 0.62525337934494 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1818253 chr16:1818241 nonsynonymous SNV 0.834 4 9 hm5C_associated_SNPs_20362 0 0 1 0 1 chromatin 1 0.500218800967708 0.74949324131012 0.999562398064585 hm5C_site_21514 DeepMRMD:0.74949324131012;iRNA_m5C:0.999562398064585 21515 chr17 1637429 1637429 1 + G A COAD 1637447 + 1637427 1637467 41 GCGTCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG GCATCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG < 41bp 1 0.554039521671953 1 0.260300844907761 experiment 0.891920956656093 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1637447 chr17:1637429 nonsynonymous SNV 0.873 0 3 hm5C_associated_SNPs_20363 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921168 1 0.999536712157663 hm5C_site_21515 DeepMRMD:1;iRNA_m5C:0.999536712157663 21516 chr10 75548512 75548512 1 + C A COAD 75548529 + 75548509 75548549 41 ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT ACCAACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT < 41bp 1 0.585925451270077 1 0.479830294847488 experiment 0.828149097459846 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75548529 chr10:75548512 nonsynonymous SNV 0.996 2 4 hm5C_associated_SNPs_20364 0 0 0 0 2 Cytosol 1 0.500231712401819 1 0.999536575196362 hm5C_site_21516 DeepMRMD:1;iRNA_m5C:0.999536575196362 21517 chr1 16199455 16199455 1 + G A COAD 16199454 + 16199434 16199474 41 GGGTGACAGAGACCTACGCACGGATTATAATGAACCAGGCA GGGTGACAGAGACCTACGCACAGATTATAATGAACCAGGCA < 41bp 1 0.163464771828956 1 0.353526949882507 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16199454 chr1:16199455 synonymous SNV . 0 22 hm5C_associated_SNPs_20365 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920165 1 0.99953671215967 hm5C_site_21517 DeepMRMD:1;iRNA_m5C:0.99953671215967 21518 chr8 145736255 145736255 1 + G A COAD 145736271 + 145736251 145736291 41 ATGCGCTGCAGCCAGCTGGCCCCCAGGGCCCTGCAGGTGAG ATGCACTGCAGCCAGCTGGCCCCCAGGGCCCTGCAGGTGAG < 41bp 1 0.375765449953392 1 0.324513167142868 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736271 chr8:145736255 nonsynonymous SNV 0.990 0 5 hm5C_associated_SNPs_20366 0 0 1 0 1 Ribosome 1 0.500231643918182 1 0.999536712163636 hm5C_site_21518 DeepMRMD:1;iRNA_m5C:0.999536712163636 21519 chr16 67662323 67662323 1 + C T COAD 67662319 + 67662299 67662339 41 CACCCACACCGGGGAGAAGCCTTACGCCTGCAGCCACTGCG CACCCACACCGGGGAGAAGCCTTATGCCTGCAGCCACTGCG < 41bp 1 0.348657291776566 1 0.113494962453842 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CTCF ENSG00000102974 CDS Human protein_coding chr16:67662319 chr16:67662323 synonymous SNV . 0 25 hm5C_associated_SNPs_20367 0 0 1 0 0 Nucleus 1 0.500231643921096 1 0.999536712157807 hm5C_site_21519 DeepMRMD:1;iRNA_m5C:0.999536712157807 21520 chr9 131247109 131247109 1 + C T COAD 131247090 + 131247070 131247110 41 AAAGAGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCG AAAGAGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGTG < 41bp 1 0.170690928195931 1 0.153223872184753 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247090 chr9:131247109 stopgain 1.000 1 40 hm5C_associated_SNPs_20368 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21520 DeepMRMD:1;iRNA_m5C:0.999536712157815 21521 chr9 131247109 131247109 1 + C T COAD 131247094 + 131247074 131247114 41 AGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCC AGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGTGAGCC < 41bp 1 0.337286493469185 1 0.421514242887497 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247094 chr9:131247109 stopgain 1.000 1 36 hm5C_associated_SNPs_20369 0 0 1 0 1 Cytosol 1 0.500231643921137 1 0.999536712157725 hm5C_site_21521 DeepMRMD:1;iRNA_m5C:0.999536712157725 21522 chr10 51863874 51863874 1 + G A COAD 51863880 + 51863860 51863900 41 AGCTCCCCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA AGCTCCCCACGTTGATTTCCCTGTTTGATGATGAAGATGAA < 41bp 1 0.126735141358839 1 0.0665976703166962 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51863880 chr10:51863874 nonsynonymous SNV 0.285 1 15 hm5C_associated_SNPs_20370 0 0 1 0 2 unknown 1 0.500231641724545 1 0.99953671655091 hm5C_site_21522 DeepMRMD:1;iRNA_m5C:0.99953671655091 21523 chr4 183696191 183696191 1 + C T COAD 183696207 + 183696187 183696227 41 CCGACGGTTGCCAAAAGAAACATGACTTTGCCTGGCGAGAA CCGATGGTTGCCAAAAGAAACATGACTTTGCCTGGCGAGAA < 41bp 1 0.385510812683397 1 0.139782458543777 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183696207 chr4:183696191 nonsynonymous SNV 0.056 3 5 hm5C_associated_SNPs_20371 0 0 0 0 0 nucleus 1 0.500231643920902 1 0.999536712158195 hm5C_site_21523 DeepMRMD:1;iRNA_m5C:0.999536712158195 21524 chr6 74502407 74502407 1 + C T COAD 74502417 + 74502397 74502437 41 TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTTTGCT TGCCTTATGGTTGTGGTGAACAGAACATGATAAATTTTGCT < 41bp 1 0.383953286960165 1 0.454790830612183 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74502417 chr6:74502407 synonymous SNV . 0 11 hm5C_associated_SNPs_20372 0 0 0 0 1 Ribosome 1 0.50023164372157 1 0.999536712556861 hm5C_site_21524 DeepMRMD:1;iRNA_m5C:0.999536712556861 21525 chr14 23794460 23794460 1 + C T COAD 23794459 + 23794439 23794479 41 CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATG CTCCTTCTTTCTTCCAGGGGCTGGGCTAGAGCGACATCATG < 41bp 1 0.468807333832895 1 0.126746952533722 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794459 chr14:23794460 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_20374 0 0 1 0 1 unknown 1 0.500231643930093 1 0.999536712139814 hm5C_site_21525 DeepMRMD:1;iRNA_m5C:0.999536712139814 21526 chr12 551007 551007 1 + G A COAD 551010 + 550990 551030 41 CCGTGACAGCAATAGACGGGCACATAAGATACAAGGAGAAC CCGTGACAGCAATAGACAGGCACATAAGATACAAGGAGAAC < 41bp 1 0.32901086987511 1 0.121663391590118 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC77 ENSG00000120647 CDS Human protein_coding chr12:551010 chr12:551007 nonsynonymous SNV 0.953 2 18 hm5C_associated_SNPs_20375 0 0 1 0 1 cytosol 1 0.500231643921093 1 0.999536712157813 hm5C_site_21526 DeepMRMD:1;iRNA_m5C:0.999536712157813 21527 chr17 78090772 78090772 1 + C A COAD 78090785 + 78090765 78090805 41 AGGTTCCCCAAGGACTCTAGCACCTGGACTGTGGACCACCA AGGTTCCACAAGGACTCTAGCACCTGGACTGTGGACCACCA < 41bp 1 0.418339952281631 1 0.141388833522797 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78090785 chr17:78090772 nonsynonymous SNV 0.450 5 8 hm5C_associated_SNPs_20376 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643817113 1 0.999536712365774 hm5C_site_21527 DeepMRMD:1;iRNA_m5C:0.999536712365774 21528 chr8 146032902 146032902 1 + G A COAD 146032912 + 146032892 146032932 41 CATCCACACCGGCGCCAAGCCCTTCCAGTGCACAGAGTGCG CATCCACACCAGCGCCAAGCCCTTCCAGTGCACAGAGTGCG < 41bp 1 0.00923042204748036 1 0.0641209781169891 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146032912 chr8:146032902 nonsynonymous SNV 0.507 3 11 hm5C_associated_SNPs_20377 0 0 0 0 0 chromatin 1 0.500226084052302 1 0.999547831895396 hm5C_site_21528 DeepMRMD:1;iRNA_m5C:0.999547831895396 21529 chr11 45882546 45882546 1 + C T COAD 45882565 + 45882545 45882585 41 ACGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT ATGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT < 41bp 1 0.0251669975465308 1 0.0463276505470276 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882565 chr11:45882546 synonymous SNV . 0 2 hm5C_associated_SNPs_20378 0 0 1 0 1 Nucleus 1 0.500231643921082 1 0.999536712157835 hm5C_site_21529 DeepMRMD:1;iRNA_m5C:0.999536712157835 21530 chr11 45882546 45882546 1 + C T COAD 45882566 + 45882546 45882586 41 CGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG TGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG < 41bp 1 0.0451407054253739 1 0.052418977022171 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882566 chr11:45882546 synonymous SNV . 0 1 hm5C_associated_SNPs_20379 0 0 1 0 1 Nucleus 1 0.50023164388602 1 0.99953671222796 hm5C_site_21530 DeepMRMD:1;iRNA_m5C:0.99953671222796 21531 chr17 78079646 78079646 1 + G T COAD 78079642 + 78079622 78079662 41 ACTCTACAGCGTGGAGTTCTCCGAGGAGCCCTTCGGGGTGA ACTCTACAGCGTGGAGTTCTCCGATGAGCCCTTCGGGGTGA < 41bp 1 0.656459040459782 1 0.651852548122406 experiment 0.687081919080436 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GAA ENSG00000171298 CDS Human protein_coding chr17:78079642 chr17:78079646 nonsynonymous SNV 0.962 1 25 hm5C_associated_SNPs_20380 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921094 0.696294903755188 0.999536712157812 hm5C_site_21531 DeepMRMD:0.696294903755188;iRNA_m5C:0.999536712157812 21532 chr7 72409183 72409183 1 + C T COAD 72409185 + 72409165 72409205 41 TCTAGCCCAGCCTCCTCCCGCTCCCAGACACCGGAGAGGCC TCTAGCCCAGCCTCCTCCTGCTCCCAGACACCGGAGAGGCC < 41bp 1 0.0969434426188042 1 0.140928268432617 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72409185 chr7:72409183 nonsynonymous SNV 0.841 0 19 hm5C_associated_SNPs_20381 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643910364 1 0.999536712179273 hm5C_site_21532 DeepMRMD:1;iRNA_m5C:0.999536712179273 21533 chr16 56867237 56867237 1 + C T COAD 56867224 + 56867204 56867244 41 GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCGCTGCCA GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGTGCTGCCA < 41bp 1 0.471000918657349 1 0.299403160810471 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56867224 chr16:56867237 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_20382 0 0 1 0 1 Nucleus 1 0.500231643914512 1 0.999536712170977 hm5C_site_21533 DeepMRMD:1;iRNA_m5C:0.999536712170977 21534 chr11 64022440 64022440 1 + T C COAD 64022456 + 64022436 64022476 41 ACGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT ACGGCGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT < 41bp 1 0.363774620565953 1 0.0838344693183899 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022456 chr11:64022440 nonsynonymous SNV 0.994 3 5 hm5C_associated_SNPs_20383 0 0 1 0 3 Ribosome 1 0.500231653383407 1 0.999536693233187 hm5C_site_21534 DeepMRMD:1;iRNA_m5C:0.999536693233187 21535 chr11 64022440 64022440 1 + T C COAD 64022457 + 64022437 64022477 41 CGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTG CGGCGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTG < 41bp 1 0.328854510332004 1 0.538246393203735 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022457 chr11:64022440 nonsynonymous SNV 0.994 3 4 hm5C_associated_SNPs_20384 0 0 1 0 3 Ribosome 1 0.500231644609707 0.92350721359253 0.999536710780586 hm5C_site_21535 DeepMRMD:0.92350721359253;iRNA_m5C:0.999536710780586 21536 chr11 64022440 64022440 1 + T C COAD 64022458 + 64022438 64022478 41 GGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTGA GGCGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTTGA < 41bp 1 0.597332201055009 1 0.796933710575104 experiment 0.805335597889982 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022458 chr11:64022440 nonsynonymous SNV 0.994 3 3 hm5C_associated_SNPs_20385 0 0 1 0 3 Ribosome 1 0.500231920629905 0.406132578849792 0.999536158740189 hm5C_site_21536 DeepMRMD:0.406132578849792;iRNA_m5C:0.999536158740189 21537 chr19 17424898 17424898 1 + G A COAD 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCGATTTCACGCGGACTCCATGTGCAAAGCCT < 41bp 1 0.200047409533456 1 0.180500090122223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424898 nonsynonymous SNV 0.923 0 29 hm5C_associated_SNPs_20386 0 0 1 0 2 Ribosome 1 0.500231647045953 1 0.999536705908094 hm5C_site_21537 DeepMRMD:1;iRNA_m5C:0.999536705908094 21538 chr21 47831434 47831434 1 + C A COAD 47831435 + 47831415 47831455 41 GAGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGCG GAGCGCAGGCACAGCCAGGACCTGGAGGCCCTGCAGCAGCG < 41bp 1 0.16226929998895 1 0.339857220649719 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831435 chr21:47831434 nonsynonymous SNV 0.966 2 20 hm5C_associated_SNPs_20388 0 0 0 0 0 Exosome 1 0.500231639559659 1 0.999536720880682 hm5C_site_21538 DeepMRMD:1;iRNA_m5C:0.999536720880682 21539 chr21 47831434 47831434 1 + C A COAD 47831443 + 47831423 47831463 41 GCACAGCCAGGCCCTGGAGGCCCTGCAGCAGCGCCTCCAGG GCACAGCCAGGACCTGGAGGCCCTGCAGCAGCGCCTCCAGG < 41bp 1 0.0557983971979244 1 0.0845041573047638 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831443 chr21:47831434 nonsynonymous SNV 0.966 2 12 hm5C_associated_SNPs_20390 0 0 0 0 0 Exosome 1 0.500231650617542 1 0.999536698764916 hm5C_site_21539 DeepMRMD:1;iRNA_m5C:0.999536698764916 21540 chr19 4950626 4950626 1 + G A COAD 4950627 + 4950607 4950647 41 CTGACTCTCCCTGCAGGGCGCTGGCTCTCAACTGCTTTGCT CTGACTCTCCCTGCAGGGCACTGGCTCTCAACTGCTTTGCT < 41bp 1 0.231473803864244 1 0.040188193321228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950627 chr19:4950626 . . 0 20 hm5C_associated_SNPs_20393 0 0 0 0 1 chromatin 1 0.500231644058318 1 0.999536711883365 hm5C_site_21540 DeepMRMD:1;iRNA_m5C:0.999536711883365 21541 chr19 4950626 4950626 1 + G A COAD 4950631 + 4950611 4950651 41 CTCTCCCTGCAGGGCGCTGGCTCTCAACTGCTTTGCTCCCA CTCTCCCTGCAGGGCACTGGCTCTCAACTGCTTTGCTCCCA < 41bp 1 0.173691773175392 1 0.125470250844955 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950631 chr19:4950626 . . 0 16 hm5C_associated_SNPs_20394 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_21541 DeepMRMD:1;iRNA_m5C:0.999536712157815 21542 chr12 57599418 57599418 1 + G A COAD 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTCTGCAGCTGCACTCGGAACTTCATGAAGACGC < 41bp 1 0.271804405861094 1 0.310987412929535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599418 nonsynonymous SNV 0.952 1 20 hm5C_associated_SNPs_20395 0 0 0 0 2 Exosome 1 0.500231643919337 1 0.999536712161326 hm5C_site_21542 DeepMRMD:1;iRNA_m5C:0.999536712161326 21543 chr11 119206484 119206484 1 + C T COAD 119206474 + 119206454 119206494 41 CTAGCCCTGGAGCTGCTGGCCTCAGCTGCCCGCCTCCTGGC CTAGCCCTGGAGCTGCTGGCCTCAGCTGCCTGCCTCCTGGC < 41bp 1 0.577069593499058 1 0.320567339658737 experiment 0.845860813001884 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF26 ENSG00000173456 CDS Human protein_coding chr11:119206474 chr11:119206484 nonsynonymous SNV 0.956 2 31 hm5C_associated_SNPs_20396 0 0 0 0 0 chromatin 1 0.500231621719192 1 0.999536756561615 hm5C_site_21543 DeepMRMD:1;iRNA_m5C:0.999536756561615 21544 chr10 104140384 104140384 1 + G A COAD 104140373 + 104140353 104140393 41 CCCTCGGCCCTCTGGGAGATCACCTGGGAACGCATTGACTG CCCTCGGCCCTCTGGGAGATCACCTGGGAACACATTGACTG < 41bp 1 0.449014424534666 1 0.0903272926807404 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104140373 chr10:104140384 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_20397 0 0 1 0 0 Nucleus 1 0.500231645351606 1 0.999536709296789 hm5C_site_21544 DeepMRMD:1;iRNA_m5C:0.999536709296789 21545 chr7 98563362 98563362 1 + G A COAD 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACACGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT < 41bp 1 0.186986330902807 1 0.453477591276169 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563362 synonymous SNV . 0 3 hm5C_associated_SNPs_20399 0 0 1 0 1 Nucleus 1 0.500231643917568 1 0.999536712164864 hm5C_site_21545 DeepMRMD:1;iRNA_m5C:0.999536712164864 21546 chr4 77631386 77631386 1 + C A COAD 77631393 + 77631373 77631413 41 CTCACCTCTGGCCCCCAGCACAGGAAAGCAGCGTGGTCAGG CTCACCTCTGGCCACCAGCACAGGAAAGCAGCGTGGTCAGG < 41bp 1 0.581618173607859 1 0.381953537464142 experiment 0.836763652784283 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77631393 chr4:77631386 nonsynonymous SNV 0.631 1 14 hm5C_associated_SNPs_20400 0 0 0 0 2 Ribosome 1 0.500231643921147 1 0.999536712157705 hm5C_site_21546 DeepMRMD:1;iRNA_m5C:0.999536712157705 21547 chr22 39826105 39826105 1 + C T COAD 39826113 + 39826093 39826133 41 CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA CTCTTCCGCTCCTGGCCCGCCCACTCGCTCCCGCCTGGCGA < 41bp 1 0.0960514361837501 1 0.175361067056656 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39826113 chr22:39826105 nonsynonymous SNV 0.818 3 13 hm5C_associated_SNPs_20401 0 0 1 0 1 Cytosol 1 0.500231465990433 1 0.999537068019133 hm5C_site_21547 DeepMRMD:1;iRNA_m5C:0.999537068019133 21548 chr1 242030154 242030154 1 + G C COAD 242030150 + 242030130 242030170 41 AGCCTGCCCATTCAAGAAGTCATAGTTGGGATGACAAAACA AGCCTGCCCATTCAAGAAGTCATACTTGGGATGACAAAACA < 41bp 1 0.0899707707542036 1 0.0602223575115204 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242030150 chr1:242030154 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_20402 0 0 1 0 1 Nucleus 1 0.500231746096072 1 0.999536507807855 hm5C_site_21548 DeepMRMD:1;iRNA_m5C:0.999536507807855 21549 chr19 45261559 45261559 1 + G A COAD 45261574 + 45261554 45261594 41 TCAGCGTCCGGCCGCGGGCTCCTCCCGCTGGTGCGCACGCT TCAGCATCCGGCCGCGGGCTCCTCCCGCTGGTGCGCACGCT < 41bp 1 0.0530675222630886 1 0.113949418067932 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45261574 chr19:45261559 synonymous SNV . 0 6 hm5C_associated_SNPs_20403 0 0 0 0 1 chromatin 1 0.500231615575023 1 0.999536768849954 hm5C_site_21549 DeepMRMD:1;iRNA_m5C:0.999536768849954 21550 chr7 130020953 130020953 1 + G A COAD 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCAAATCTCTGTAGCCGATGAGGCCCAGGTACAGA < 41bp 1 0.243437000291704 1 0.0738238096237183 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020953 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_20405 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_21550 DeepMRMD:1;iRNA_m5C:0.999536712157816 21551 chr9 133507350 133507350 1 + C T COAD 133507332 + 133507312 133507352 41 CTTTTACCTTTTCCCAGTACCTTTCCTCCAAGGAGCTCCGG CTTTTACCTTTTCCCAGTACCTTTCCTCCAAGGAGCTCTGG < 41bp 1 0.0501011486299542 1 0.0295866131782532 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507332 chr9:133507350 synonymous SNV . 0 39 hm5C_associated_SNPs_20407 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_21551 DeepMRMD:1;iRNA_m5C:0.999536712157815 21552 chr12 62931428 62931428 1 + C T COAD 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGTGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC < 41bp 1 0.15719390597384 1 0.0482230484485626 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931428 nonsynonymous SNV 0.934 3 6 hm5C_associated_SNPs_20408 0 0 1 0 2 Nucleus 1 0.500231628696828 1 0.999536742606343 hm5C_site_21552 DeepMRMD:1;iRNA_m5C:0.999536742606343 21553 chr6 13591965 13591965 1 + G A COAD 13591954 + 13591934 13591974 41 CCGTCCCGGGTGTGGGAGTTCTACCACTACCGGCGGGAGGT CCGTCCCGGGTGTGGGAGTTCTACCACTACCAGCGGGAGGT < 41bp 1 0.622425042381748 1 0.158976465463638 experiment 0.755149915236504 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13591954 chr6:13591965 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_20409 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21553 DeepMRMD:1;iRNA_m5C:0.999536712157815 21554 chr6 37141795 37141795 1 + G A COAD 37141808 + 37141788 37141828 41 CATGGATGCAAGATGTTCTCCTGCCCCAGGAAACTGCTGAG CATGGATACAAGATGTTCTCCTGCCCCAGGAAACTGCTGAG < 41bp 1 0.291003874152232 1 0.232919752597809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PIM1 ENSG00000137193 CDS Human protein_coding chr6:37141808 chr6:37141795 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_20410 0 0 1 0 1 Cytosol 1 0.500231643921351 1 0.999536712157298 hm5C_site_21554 DeepMRMD:1;iRNA_m5C:0.999536712157298 21555 chrX 9661224 9661224 1 + C T COAD 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG TGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG < 41bp 1 0.47554989301033 1 0.219690501689911 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661224 synonymous SNV . 0 1 hm5C_associated_SNPs_20411 0 0 1 0 2 Cytosol 1 0.500231676724632 1 0.999536646550736 hm5C_site_21555 DeepMRMD:1;iRNA_m5C:0.999536646550736 21556 chr11 763825 763825 1 + G A COAD 763823 + 763803 763843 41 ATTGTCATGGGCGCCTCCTTCCGCAACACGGGCGAGATCAA ATTGTCATGGGCGCCTCCTTCCACAACACGGGCGAGATCAA < 41bp 1 0.670849413590688 1 0.600056946277618 experiment 0.658301172818624 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:763823 chr11:763825 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_20412 0 0 1 0 1 Ribosome 1 0.500231643953096 0.799886107444764 0.999536712093807 hm5C_site_21556 DeepMRMD:0.799886107444764;iRNA_m5C:0.999536712093807 21557 chr19 12923928 12923928 1 + C T COAD 12923946 + 12923926 12923966 41 CACGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTT CATGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTT < 41bp 1 0.134050102637272 1 0.0636387169361115 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12923946 chr19:12923928 synonymous SNV . 0 3 hm5C_associated_SNPs_20413 0 0 1 0 2 Ribosome 1 0.50023164394808 1 0.99953671210384 hm5C_site_21557 DeepMRMD:1;iRNA_m5C:0.99953671210384 21558 chr3 9788110 9788110 1 + G A COAD 9788101 + 9788081 9788121 41 CCCAGGAAGCCCGAGAGCATCTCTACCTCGTCCTCTTCTTT CCCAGGAAGCCCGAGAGCATCTCTACCTCATCCTCTTCTTT < 41bp 1 0.485794678589103 1 0.281896829605103 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9788101 chr3:9788110 nonsynonymous SNV 0.995 3 30 hm5C_associated_SNPs_20414 0 0 1 0 1 Nucleus 1 0.500231643921114 1 0.999536712157772 hm5C_site_21558 DeepMRMD:1;iRNA_m5C:0.999536712157772 21559 chr21 45217901 45217901 1 + C T COAD 45217920 + 45217900 45217940 41 GCGTCGGACAGTGATGAGTCCTCTGAGGGTGGTGAGCGTGG GTGTCGGACAGTGATGAGTCCTCTGAGGGTGGTGAGCGTGG < 41bp 1 0.367214662645675 1 0.297252178192139 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217920 chr21:45217901 nonsynonymous SNV 0.000 0 2 hm5C_associated_SNPs_20415 0 0 1 0 1 Ribosome 1 0.500231643650601 1 0.999536712698798 hm5C_site_21559 DeepMRMD:1;iRNA_m5C:0.999536712698798 21560 chr9 95599749 95599749 1 + C T COAD 95599736 + 95599716 95599756 41 CGCTGTGGTCTCCGCTGGGGCCGCTGGAGGCCCCGGGGCCT CGCTGTGGTCTCCGCTGGGGCCGCTGGAGGCCCTGGGGCCT < 41bp 1 0.449187661290799 1 0.345620632171631 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599736 chr9:95599749 . . 0 34 hm5C_associated_SNPs_20416 0 0 0 0 0 unknown 1 0.50023163545581 1 0.99953672908838 hm5C_site_21560 DeepMRMD:1;iRNA_m5C:0.99953672908838 21561 chr9 95599749 95599749 1 + C T COAD 95599746 + 95599726 95599766 41 TCCGCTGGGGCCGCTGGAGGCCCCGGGGCCTGAGTTTCCGG TCCGCTGGGGCCGCTGGAGGCCCTGGGGCCTGAGTTTCCGG < 41bp 1 0.402091814007291 1 0.360206365585327 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599746 chr9:95599749 . . 0 24 hm5C_associated_SNPs_20418 0 0 0 0 0 unknown 1 0.500231644130437 1 0.999536711739125 hm5C_site_21561 DeepMRMD:1;iRNA_m5C:0.999536711739125 21562 chr9 95599749 95599749 1 + C T COAD 95599747 + 95599727 95599767 41 CCGCTGGGGCCGCTGGAGGCCCCGGGGCCTGAGTTTCCGGC CCGCTGGGGCCGCTGGAGGCCCTGGGGCCTGAGTTTCCGGC < 41bp 1 0.462888506931572 1 0.552544414997101 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599747 chr9:95599749 . . 0 23 hm5C_associated_SNPs_20419 0 0 0 0 0 unknown 1 0.500231643921067 0.894911170005798 0.999536712157866 hm5C_site_21562 DeepMRMD:0.894911170005798;iRNA_m5C:0.999536712157866 21563 chr12 53343318 53343318 1 + C T COAD 53343306 - 53343286 53343326 41 GACCTGGGGTCCCTTCTTCTCCAAGTGCTCCCGGATTTTGC GACCTGGGATCCCTTCTTCTCCAAGTGCTCCCGGATTTTGC < 41bp 1 0.404473985789667 1 0.347249805927277 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53343306 chr12:53343318 nonsynonymous SNV 0.998 2 9 hm5C_associated_SNPs_20420 0 0 0 0 1 Cytosol 1 0.50023164392109 1 0.999536712157819 hm5C_site_21563 DeepMRMD:1;iRNA_m5C:0.999536712157819 21564 chr12 113867027 113867027 1 + G A COAD 113867026 + 113867006 113867046 41 CTGGGCATTCCTGCCACCATCGTGCTCCCCGAGAGCACCTC CTGGGCATTCCTGCCACCATCATGCTCCCCGAGAGCACCTC < 41bp 1 0.452737989496483 1 0.448094993829727 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDSL ENSG00000139410 CDS Human protein_coding chr12:113867026 chr12:113867027 nonsynonymous SNV 0.875 5 22 hm5C_associated_SNPs_20421 0 0 0 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_21564 DeepMRMD:1;iRNA_m5C:0.999536712157815 21565 chr7 156746891 156746891 1 + G A COAD 156746911 + 156746891 156746931 41 GCTCTCATGGGTGCCTGCGTCACTGCCTCGGCCATGCCCAG ACTCTCATGGGTGCCTGCGTCACTGCCTCGGCCATGCCCAG < 41bp 1 0.553597443495317 1 0.448525130748749 experiment 0.892805113009366 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOM1 ENSG00000146909 CDS Human protein_coding chr7:156746911 chr7:156746891 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_20422 0 0 1 0 1 Nucleus 1 0.50023164391411 1 0.99953671217178 hm5C_site_21565 DeepMRMD:1;iRNA_m5C:0.99953671217178 21566 chr2 113243553 113243553 1 + C T COAD 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTGAATTACTACAGGGGTGCTGACAAACTGTGTTGCAAAG < 41bp 1 0.238228025069472 1 0.190762549638748 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243553 nonsynonymous SNV 0.998 4 35 hm5C_associated_SNPs_20425 0 0 1 0 2 Cytosol 1 0.500231643921135 1 0.999536712157729 hm5C_site_21566 DeepMRMD:1;iRNA_m5C:0.999536712157729 21567 chr9 33917134 33917134 1 + C A COAD 33917126 + 33917106 33917146 41 GCCTTCCAATGACAACAGCTCAGATTTGCTTTACGACGACT GCCTTCCAATGACAACAGCTCAGATTTGATTTACGACGACT < 41bp 1 0.271258296956187 1 0.148366898298264 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917126 chr9:33917134 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_20426 0 0 1 0 0 Cytosol 1 0.500231663166246 1 0.999536673667508 hm5C_site_21567 DeepMRMD:1;iRNA_m5C:0.999536673667508 21568 chr9 33917134 33917134 1 + C A COAD 33917142 + 33917122 33917162 41 AGCTCAGATTTGCTTTACGACGACTTGTATGATGACGACAT AGCTCAGATTTGATTTACGACGACTTGTATGATGACGACAT < 41bp 1 0.30591901745373 1 0.0392135381698608 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917142 chr9:33917134 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_20427 0 0 1 0 0 Cytosol 1 0.500231607646391 1 0.999536784707218 hm5C_site_21568 DeepMRMD:1;iRNA_m5C:0.999536784707218 21569 chr9 33917134 33917134 1 + C A COAD 33917145 + 33917125 33917165 41 TCAGATTTGCTTTACGACGACTTGTATGATGACGACATTGA TCAGATTTGATTTACGACGACTTGTATGATGACGACATTGA < 41bp 1 0.139047867671198 1 0.049559473991394 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917145 chr9:33917134 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_20428 0 0 1 0 0 Cytosol 1 0.500231640938839 1 0.999536718122321 hm5C_site_21569 DeepMRMD:1;iRNA_m5C:0.999536718122321 21570 chr9 72913054 72913054 1 + G A COAD 72913039 + 72913019 72913059 41 GCCCCAGATTGATGCCATTACAAATGATCTGAGACGGATTC GCCCCAGATTGATGCCATTACAAATGATCTGAGACAGATTC < 41bp 1 0.460793987533954 1 0.260173141956329 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC5 ENSG00000198887 CDS Human protein_coding chr9:72913039 chr9:72913054 nonsynonymous SNV 0.546 0 36 hm5C_associated_SNPs_20429 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_21570 DeepMRMD:1;iRNA_m5C:0.999536712157812 21571 chr14 105814903 105814903 1 + G A COAD 105814915 + 105814895 105814935 41 TGGTGATCGCTGTCAAGATGCAGGTGAGGCCGCTTGTGACC TGGTGATCACTGTCAAGATGCAGGTGAGGCCGCTTGTGACC < 41bp 1 0.535390550787517 1 0.592350661754608 experiment 0.929218898424967 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS2 ENSG00000179364 CDS Human protein_coding chr14:105814915 chr14:105814903 nonsynonymous SNV 0.915 3 9 hm5C_associated_SNPs_20430 0 0 1 0 2 Cytosol 1 0.500231643926743 0.815298676490784 0.999536712146514 hm5C_site_21571 DeepMRMD:0.815298676490784;iRNA_m5C:0.999536712146514 21572 chr2 220149398 220149398 1 + G A COAD 220149415 + 220149395 220149435 41 CGCGAGCAGCAGCCGTCAGTCACTTCCAGGTCTGGGGGCAC CGCAAGCAGCAGCCGTCAGTCACTTCCAGGTCTGGGGGCAC < 41bp 1 0.472967662138611 1 0.470569103956223 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220149415 chr2:220149398 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_20431 1 0 1 0 1 Cytosol 1 0.500231658637629 1 0.999536682724743 hm5C_site_21572 DeepMRMD:1;iRNA_m5C:0.999536682724743 not specified not specified 21573 chr6 29911973 29911973 1 + T C COAD 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCCTCTACCC < 41bp 1 0.697257949618817 1 0.463398456573486 experiment 0.605484100762366 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911973 nonsynonymous SNV 0.009 1 34 hm5C_associated_SNPs_20433 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392109 1 0.99953671215782 hm5C_site_21573 DeepMRMD:1;iRNA_m5C:0.99953671215782 21574 chr1 116940623 116940623 1 + A G COAD 116940615 + 116940595 116940635 41 GAGATAGTGTTTGCCAGGACCTCCCCTCAGCAGAAGCTCAT GAGATAGTGTTTGCCAGGACCTCCCCTCGGCAGAAGCTCAT < 41bp 1 0.256128798032654 1 0.278666526079178 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116940615 chr1:116940623 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_20434 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_21574 DeepMRMD:1;iRNA_m5C:0.999536712157813 21575 chr3 63965704 63965704 1 + C T COAD 63965690 + 63965670 63965710 41 CAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTCTT CAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACTGTTCTT < 41bp 1 0.36952675851814 1 0.624924182891846 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63965690 chr3:63965704 nonsynonymous SNV 0.989 2 35 hm5C_associated_SNPs_20435 0 0 1 0 0 Cytosol 1 0.500231640285302 0.750151634216308 0.999536719429397 hm5C_site_21575 DeepMRMD:0.750151634216308;iRNA_m5C:0.999536719429397 21576 chr19 33202821 33202821 1 + C T COAD 33202807 + 33202787 33202827 41 ATATCCACGTGACTGTTCAGCCAAAGTATAAACACGTTTAT ATATCCACGTGACTGTTCAGCCAAAGTATAAACATGTTTAT < 41bp 1 0.322016100582087 1 0.122235596179962 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUDT19 ENSG00000213965 CDS Human protein_coding chr19:33202807 chr19:33202821 synonymous SNV . 0 35 hm5C_associated_SNPs_20436 0 0 1 0 0 Ribosome 1 0.500220935008112 1 0.999558129983776 hm5C_site_21576 DeepMRMD:1;iRNA_m5C:0.999558129983776 21577 chr10 73039801 73039801 1 + C T COAD 73039798 + 73039778 73039818 41 CAGGAAGGCCTGGATGAGGCCACCGGTGAGCCCGCCCCACT CAGGAAGGCCTGGATGAGGCCACTGGTGAGCCCGCCCCACT < 41bp 1 0.490860943065502 1 0.13699808716774 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC5B ENSG00000107731 CDS Human protein_coding chr10:73039798 chr10:73039801 synonymous SNV . 0 24 hm5C_associated_SNPs_20437 0 0 1 0 1 nucleoplasm 1 0.50023164392939 1 0.999536712141221 hm5C_site_21577 DeepMRMD:1;iRNA_m5C:0.999536712141221 21578 chr2 101186042 101186042 1 + G A COAD 101186044 + 101186024 101186064 41 TCCTTGTTTTGTGCAGACGGCGGAGACTGGCTGAGTGGAAA TCCTTGTTTTGTGCAGACAGCGGAGACTGGCTGAGTGGAAA < 41bp 1 0.674998179284603 1 0.835071921348572 experiment 0.650003641430794 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101186044 chr2:101186042 nonsynonymous SNV 0.858 0 19 hm5C_associated_SNPs_20438 0 0 1 0 1 exosome 1 0.500231643888724 0.329856157302856 0.999536712222551 hm5C_site_21578 DeepMRMD:0.329856157302856;iRNA_m5C:0.999536712222551 21579 chr3 39431979 39431979 1 + T C COAD 39431995 + 39431975 39432015 41 GGCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG GGCCCTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG < 41bp 1 0.290093420800664 1 0.147310763597488 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431995 chr3:39431979 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_20439 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21579 DeepMRMD:1;iRNA_m5C:0.999536712157815 21580 chr3 14905695 14905695 1 + T G COAD 14905692 + 14905672 14905712 41 TCGGCAGCCCCCAAAGAGGACCTTACGTCGGATGAAGAGCA TCGGCAGCCCCCAAAGAGGACCTGACGTCGGATGAAGAGCA < 41bp 1 0.116537284479071 1 0.1018006503582 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FGD5 ENSG00000154783 CDS Human protein_coding chr3:14905692 chr3:14905695 synonymous SNV . 0 24 hm5C_associated_SNPs_20440 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_21580 DeepMRMD:1;iRNA_m5C:0.999536712157815 21581 chr7 101845271 101845271 1 + C T COAD 101845280 + 101845260 101845300 41 CTGAGTCTGACCGGGGCCAGCCGCAGCGAGACACCACAGAA CTGAGTCTGACTGGGGCCAGCCGCAGCGAGACACCACAGAA < 41bp 1 0.319989314503863 1 0.486311405897141 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101845280 chr7:101845271 synonymous SNV . 0 12 hm5C_associated_SNPs_20441 0 0 1 0 0 Exosome 1 0.500231661795033 1 0.999536676409934 hm5C_site_21581 DeepMRMD:1;iRNA_m5C:0.999536676409934 21582 chr2 97215166 97215166 1 + G A COAD 97215177 + 97215157 97215197 41 ACGCCCATCGAGAGGGTGCCCCATCTCGGCTTCAAGCAGAG ACGCCCATCAAGAGGGTGCCCCATCTCGGCTTCAAGCAGAG < 41bp 1 0.0947915336095056 1 0.131314277648926 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID5A ENSG00000196843 CDS Human protein_coding chr2:97215177 chr2:97215166 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_20442 0 0 0 0 0 Cytosol 1 0.500231643229383 1 0.999536713541233 hm5C_site_21582 DeepMRMD:1;iRNA_m5C:0.999536713541233 21583 chr5 38885488 38885488 1 + C T COAD 38885507 + 38885487 38885527 41 CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG CTGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG < 41bp 1 0.364722329821229 1 0.0508376061916351 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSMR ENSG00000145623 CDS Human protein_coding chr5:38885507 chr5:38885488 synonymous SNV . 0 2 hm5C_associated_SNPs_20443 0 0 1 0 2 Nucleus 1 0.500231644915777 1 0.999536710168445 hm5C_site_21583 DeepMRMD:1;iRNA_m5C:0.999536710168445 21584 chr19 39979213 39979213 1 + C T COAD 39979223 + 39979203 39979243 41 ACGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC ACGTGCGAACTGTGCTGGAGCACTATGCCCTGGAGGATGAC < 41bp 1 0.475872043084985 1 0.10144305229187 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39979223 chr19:39979213 synonymous SNV . 0 11 hm5C_associated_SNPs_20444 0 0 1 0 2 Ribosome 1 0.500231643921084 1 0.999536712157832 hm5C_site_21584 DeepMRMD:1;iRNA_m5C:0.999536712157832 21585 chr14 104124098 104124098 1 + C T COAD 104124107 + 104124087 104124127 41 AAATATGATGACGACATTTCCCCATCCGTGAGTGGCTCTGT AAATATGATGATGACATTTCCCCATCCGTGAGTGGCTCTGT < 41bp 1 0.0922975985790376 1 0.301946014165878 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124107 chr14:104124098 synonymous SNV . 0 12 hm5C_associated_SNPs_20445 0 0 1 0 1 Cytosol 1 0.500231644517833 1 0.999536710964334 hm5C_site_21585 DeepMRMD:1;iRNA_m5C:0.999536710964334 21586 chr14 104124098 104124098 1 + C T COAD 104124108 + 104124088 104124128 41 AATATGATGACGACATTTCCCCATCCGTGAGTGGCTCTGTA AATATGATGATGACATTTCCCCATCCGTGAGTGGCTCTGTA < 41bp 1 0.0439431764364009 1 0.253572583198547 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124108 chr14:104124098 synonymous SNV . 0 11 hm5C_associated_SNPs_20446 0 0 1 0 1 Cytosol 1 0.500231822866123 1 0.999536354267754 hm5C_site_21586 DeepMRMD:1;iRNA_m5C:0.999536354267754 21587 chr14 104124098 104124098 1 + C T COAD 104124112 + 104124092 104124132 41 TGATGACGACATTTCCCCATCCGTGAGTGGCTCTGTAGCAA TGATGATGACATTTCCCCATCCGTGAGTGGCTCTGTAGCAA < 41bp 1 0.139927305269547 1 0.345561325550079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124112 chr14:104124098 synonymous SNV . 0 7 hm5C_associated_SNPs_20447 0 0 1 0 1 Cytosol 1 0.50023164392109 1 0.999536712157819 hm5C_site_21587 DeepMRMD:1;iRNA_m5C:0.999536712157819 21588 chr19 39948323 39948323 1 + G A COAD 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA AATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.252896781463905 1 0.164279043674469 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948323 nonsynonymous SNV 0.872 3 1 hm5C_associated_SNPs_20448 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_21588 DeepMRMD:1;iRNA_m5C:0.999536712157814 21589 chr19 1037831 1037831 1 + G T COAD 1037820 + 1037800 1037840 41 CACAGTGGCCGATGGGGCTCCCTCGGGCACCGGCGACTGCC CACAGTGGCCGATGGGGCTCCCTCGGGCACCTGCGACTGCC < 41bp 1 0.209691847256429 1 0.131156086921692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037820 chr19:1037831 nonsynonymous SNV 0.000 3 32 hm5C_associated_SNPs_20449 0 0 1 0 0 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_21589 DeepMRMD:1;iRNA_m5C:0.999536712157812 21590 chr19 1037831 1037831 1 + G T COAD 1037841 + 1037821 1037861 41 CTCGGGCACCGGCGACTGCCCGGACCCGGGGGAGGTCCCTG CTCGGGCACCTGCGACTGCCCGGACCCGGGGGAGGTCCCTG < 41bp 1 0.662712945637177 1 0.330913305282593 experiment 0.674574108725646 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037841 chr19:1037831 nonsynonymous SNV 0.000 3 11 hm5C_associated_SNPs_20451 0 0 1 0 0 Ribosome 1 0.500231643920629 1 0.999536712158742 hm5C_site_21590 DeepMRMD:1;iRNA_m5C:0.999536712158742 21591 chr19 1037831 1037831 1 + G T COAD 1037845 + 1037825 1037865 41 GGCACCGGCGACTGCCCGGACCCGGGGGAGGTCCCTGAATA GGCACCTGCGACTGCCCGGACCCGGGGGAGGTCCCTGAATA < 41bp 1 0.610590601688696 1 0.872855842113495 experiment 0.778818796622609 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037845 chr19:1037831 nonsynonymous SNV 0.000 3 7 hm5C_associated_SNPs_20452 0 0 1 0 0 Ribosome 1 0.500230611618056 0.25428831577301 0.999538776763888 hm5C_site_21591 DeepMRMD:0.25428831577301;iRNA_m5C:0.999538776763888 21592 chr19 1037831 1037831 1 + G T COAD 1037846 + 1037826 1037866 41 GCACCGGCGACTGCCCGGACCCGGGGGAGGTCCCTGAATAT GCACCTGCGACTGCCCGGACCCGGGGGAGGTCCCTGAATAT < 41bp 1 0.646129213497683 1 0.876762747764587 experiment 0.707741573004634 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037846 chr19:1037831 nonsynonymous SNV 0.000 3 6 hm5C_associated_SNPs_20453 0 0 1 0 0 Ribosome 1 0.500231643910015 0.246474504470826 0.999536712179971 hm5C_site_21592 DeepMRMD:0.246474504470826;iRNA_m5C:0.999536712179971 21593 chr7 45662255 45662255 1 + T C COAD 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GCTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.444582377458638 1 0.596491813659668 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662255 synonymous SNV . 0 2 hm5C_associated_SNPs_20454 0 0 1 0 2 Nucleus 1 0.500231643915261 0.807016372680664 0.999536712169478 hm5C_site_21593 DeepMRMD:0.807016372680664;iRNA_m5C:0.999536712169478 21594 chr19 49593597 49593597 1 + G A COAD 49593586 + 49593566 49593606 41 CCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG CCTCCAACTCGTGCTGAAACCCGAGAGGAGCACATGGAGAG < 41bp 1 0.479167208578751 1 0.726839482784271 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593586 chr19:49593597 nonsynonymous SNV 0.997 4 32 hm5C_associated_SNPs_20457 0 0 1 0 2 Nucleus 1 0.50023164392528 0.546321034431458 0.99953671214944 hm5C_site_21594 DeepMRMD:0.546321034431458;iRNA_m5C:0.99953671214944 21595 chr19 49593597 49593597 1 + G A COAD 49593596 + 49593576 49593616 41 GTGCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGT GTGCTGAAACCCGAGAGGAGCACATGGAGAGGAAAGTATGT < 41bp 1 0.186565131416864 1 0.397282183170319 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593596 chr19:49593597 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_20458 0 0 1 0 2 Nucleus 1 0.500231643921296 1 0.999536712157408 hm5C_site_21595 DeepMRMD:1;iRNA_m5C:0.999536712157408 21596 chr19 49593597 49593597 1 + G A COAD 49593598 + 49593578 49593618 41 GCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGTCA GCTGAAACCCGAGAGGAGCACATGGAGAGGAAAGTATGTCA < 41bp 1 0.555740691192923 1 0.360303103923798 experiment 0.888518617614155 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593598 chr19:49593597 nonsynonymous SNV 0.997 4 20 hm5C_associated_SNPs_20459 0 0 1 0 2 Nucleus 1 0.5002316439212 1 0.999536712157601 hm5C_site_21596 DeepMRMD:1;iRNA_m5C:0.999536712157601 21597 chr1 28862501 28862501 1 + C T COAD 28862499 + 28862479 28862519 41 TTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTC TTGCCATCTCCCATGAGGGCCATGTGTACGGCTTCGGCCTC < 41bp 1 0.317962931963195 1 0.0629045963287354 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862499 chr1:28862501 synonymous SNV . 0 23 hm5C_associated_SNPs_20460 0 0 1 0 1 Ribosome 1 0.500231644401073 1 0.999536711197855 hm5C_site_21597 DeepMRMD:1;iRNA_m5C:0.999536711197855 21598 chr2 101549387 101549387 1 + C T COAD 101549381 + 101549361 101549401 41 CTCTTTTCTAGAAGTCTCAGCGCAAACGGAAATCTGTGACA CTCTTTTCTAGAAGTCTCAGCGCAAATGGAAATCTGTGACA < 41bp 1 0.382223554479768 1 0.706917703151703 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101549381 chr2:101549387 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_20462 0 0 1 0 2 cytosol 1 0.500231643921092 0.586164593696594 0.999536712157815 hm5C_site_21598 DeepMRMD:0.586164593696594;iRNA_m5C:0.999536712157815 21599 chr5 118484601 118484601 1 + C T COAD 118484585 + 118484565 118484605 41 GGAAAAATTGATCTTGCATACATTTGGGAAGAATGGCCATT GGAAAAATTGATCTTGCATACATTTGGGAAGAATGGTCATT < 41bp 1 0.0320392682427217 1 0.104627311229706 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DMXL1 ENSG00000172869 CDS Human protein_coding chr5:118484585 chr5:118484601 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_20463 0 0 1 0 0 Cytosol 1 0.500231643921144 1 0.999536712157711 hm5C_site_21599 DeepMRMD:1;iRNA_m5C:0.999536712157711 21600 chr1 161751784 161751784 1 + G A COAD 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GACATTTGGGACATCAACAACCAAATCTATACAGGTAATTA < 41bp 1 0.158087398468044 1 0.0671840906143188 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751784 nonsynonymous SNV 0.994 0 29 hm5C_associated_SNPs_20464 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921453 1 0.999536712157094 hm5C_site_21600 DeepMRMD:1;iRNA_m5C:0.999536712157094 21601 chr17 75398196 75398196 1 + C A COAD 75398205 + 75398185 75398225 41 TCCACCCCACCCCGGAGGGTCCAGACTCCCCTACTCCGAGC TCCACCCCACCACGGAGGGTCCAGACTCCCCTACTCCGAGC < 41bp 1 0.337152002353115 1 0.199288606643677 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 CDS Human protein_coding chr17:75398205 chr17:75398196 synonymous SNV . 0 12 hm5C_associated_SNPs_20465 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21601 DeepMRMD:1;iRNA_m5C:0.999536712157815 21602 chr15 32920978 32920978 1 + T G COAD 32920986 + 32920966 32921006 41 CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTGGTA CAGAACACCTTCGATTACACCTCAAGAAGAAAGAATTGGTA < 41bp 1 0.467150480685619 1 0.555000782012939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32920986 chr15:32920978 synonymous SNV . 0 13 hm5C_associated_SNPs_20466 0 0 1 0 2 Ribosome 1 0.500235221740579 0.889998435974122 0.999529556518841 hm5C_site_21602 DeepMRMD:0.889998435974122;iRNA_m5C:0.999529556518841 21603 chr17 3563926 3563926 1 + C T COAD 3563941 + 3563921 3563961 41 GCGCGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGC GCGCGTACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGC < 41bp 1 0.102217412262068 1 0.139604359865189 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNS ENSG00000040531 CDS Human protein_coding chr17:3563941 chr17:3563926 synonymous SNV . 0 6 hm5C_associated_SNPs_20468 0 0 0 0 1 Endoplasmic reticulum 1 0.500231640603282 1 0.999536718793435 hm5C_site_21603 DeepMRMD:1;iRNA_m5C:0.999536718793435 21604 chr17 3563926 3563926 1 + C T COAD 3563942 + 3563922 3563962 41 CGCGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGCA CGCGTACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGCA < 41bp 1 0.254272405385348 1 0.29515939950943 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNS ENSG00000040531 CDS Human protein_coding chr17:3563942 chr17:3563926 synonymous SNV . 0 5 hm5C_associated_SNPs_20469 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_21604 DeepMRMD:1;iRNA_m5C:0.999536712157815 21605 chr10 95262988 95262988 1 + T C COAD 95262979 + 95262959 95262999 41 GAAGGCCAGATATAGTACTACCACATTGCTTGAACAGCTGG GAAGGCCAGATATAGTACTACCACATTGCCTGAACAGCTGG < 41bp 1 0.471506625328439 1 0.115105926990509 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262979 chr10:95262988 nonsynonymous SNV 0.006 3 30 hm5C_associated_SNPs_20470 0 0 1 0 0 Ribosome 1 0.500231643924613 1 0.999536712150775 hm5C_site_21605 DeepMRMD:1;iRNA_m5C:0.999536712150775 21606 chr10 95262988 95262988 1 + T C COAD 95262980 + 95262960 95263000 41 AAGGCCAGATATAGTACTACCACATTGCTTGAACAGCTGGA AAGGCCAGATATAGTACTACCACATTGCCTGAACAGCTGGA < 41bp 1 0.383125751079187 1 0.0770024359226227 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262980 chr10:95262988 nonsynonymous SNV 0.006 3 29 hm5C_associated_SNPs_20471 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_21606 DeepMRMD:1;iRNA_m5C:0.999536712157814 21607 chr10 95262988 95262988 1 + T C COAD 95262982 + 95262962 95263002 41 GGCCAGATATAGTACTACCACATTGCTTGAACAGCTGGAAG GGCCAGATATAGTACTACCACATTGCCTGAACAGCTGGAAG < 41bp 1 0.223996556631733 1 0.140463024377823 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262982 chr10:95262988 nonsynonymous SNV 0.006 3 27 hm5C_associated_SNPs_20472 0 0 1 0 0 Ribosome 1 0.50023164419024 1 0.99953671161952 hm5C_site_21607 DeepMRMD:1;iRNA_m5C:0.99953671161952 21608 chr9 100757037 100757037 1 + T G COAD 100757048 + 100757028 100757068 41 TTTCAAATCTCCCCAAGCTGCCTAAATTGAAAAAGGTAAGT TTTCAAATCGCCCCAAGCTGCCTAAATTGAAAAAGGTAAGT < 41bp 1 0.111407542636807 1 0.0994461178779602 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100757048 chr9:100757037 nonsynonymous SNV 0.985 4 10 hm5C_associated_SNPs_20473 0 0 1 0 1 Cytosol 1 0.500231899054367 1 0.999536201891265 hm5C_site_21608 DeepMRMD:1;iRNA_m5C:0.999536201891265 21609 chr9 114296071 114296071 1 + A C COAD 114296051 + 114296031 114296071 41 TTGAAGGATGTAGCTGTGAACTTTTCAAGAGGAGAGTGGAA TTGAAGGATGTAGCTGTGAACTTTTCAAGAGGAGAGTGGAC < 41bp 1 0.0584567634886293 1 0.0368918180465698 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF483 ENSG00000173258 CDS Human protein_coding chr9:114296051 chr9:114296071 nonsynonymous SNV 0.790 0 41 hm5C_associated_SNPs_20474 0 0 0 0 2 Nucleus 1 0.500231636260658 1 0.999536727478684 hm5C_site_21609 DeepMRMD:1;iRNA_m5C:0.999536727478684 21610 chr4 20568891 20568891 1 + T C COAD 20568888 + 20568868 20568908 41 TTTGAATTAATTTTCAGGTCCTGTGGATGTCAATATTCTAG TTTGAATTAATTTTCAGGTCCTGCGGATGTCAATATTCTAG < 41bp 1 0.172456469899101 1 0.119452655315399 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568888 chr4:20568891 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_20475 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21610 DeepMRMD:1;iRNA_m5C:0.999536712157815 21611 chr16 72048541 72048541 1 + G A COAD 72048554 + 72048534 72048574 41 GTCTTCCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTA GTCTTCCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTA < 41bp 1 0.212389666184233 1 0.0471792817115784 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048554 chr16:72048541 nonsynonymous SNV 0.971 5 8 hm5C_associated_SNPs_20476 0 0 1 3 1 Endoplasmic reticulum 1 0.500231643933991 1 0.999536712132019 hm5C_site_21611 DeepMRMD:1;iRNA_m5C:0.999536712132019 21612 chr16 72048541 72048541 1 + G A COAD 72048555 + 72048535 72048575 41 TCTTCCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTAG TCTTCCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTAG < 41bp 1 0.417208767885187 1 0.361894905567169 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048555 chr16:72048541 nonsynonymous SNV 0.971 5 7 hm5C_associated_SNPs_20477 0 0 1 3 1 Endoplasmic reticulum 1 0.50023163546007 1 0.99953672907986 hm5C_site_21612 DeepMRMD:1;iRNA_m5C:0.99953672907986 21613 chr16 72048541 72048541 1 + G A COAD 72048559 + 72048539 72048579 41 CCGCCTCCCTGAGGACCAAGCTGTCATTAACAGGTAGGTGA CCACCTCCCTGAGGACCAAGCTGTCATTAACAGGTAGGTGA < 41bp 1 0.263632984898471 1 0.0613999962806702 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048559 chr16:72048541 nonsynonymous SNV 0.971 5 3 hm5C_associated_SNPs_20478 0 0 1 3 1 Endoplasmic reticulum 1 0.500231643946502 1 0.999536712106996 hm5C_site_21613 DeepMRMD:1;iRNA_m5C:0.999536712106996 21614 chr16 2122324 2122324 1 + C A COAD 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATCTTTACTTCCCATTGCAGTGTGGACCAGC < 41bp 1 0.0791515205844313 1 0.0275648236274719 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122324 nonsynonymous SNV 0.406 4 24 hm5C_associated_SNPs_20479 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164399257 1 0.99953671201486 hm5C_site_21614 DeepMRMD:1;iRNA_m5C:0.99953671201486 21615 chr16 1823715 1823715 1 + A C COAD 1823707 + 1823687 1823727 41 TCCTCTCCCCCGGTCCCAGCCATCCTGGAAGACGCCGGTGC TCCTCTCCCCCGGTCCCAGCCATCCTGGCAGACGCCGGTGC < 41bp 1 0.159227394601065 1 0.271699607372284 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EME2 ENSG00000197774 CDS Human protein_coding chr16:1823707 chr16:1823715 nonsynonymous SNV 0.785 3 29 hm5C_associated_SNPs_20482 0 0 1 0 1 chromatin 1 0.500231643921175 1 0.999536712157649 hm5C_site_21615 DeepMRMD:1;iRNA_m5C:0.999536712157649 21616 chr2 9528458 9528458 1 + C A COAD 9528446 + 9528426 9528466 41 AGTCCCAACCGGCGGGAAGACCGGCCCATCAGCTTCTACCA AGTCCCAACCGGCGGGAAGACCGGCCCATCAGATTCTACCA < 41bp 1 0.424659679834315 1 0.526585519313812 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9528446 chr2:9528458 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_20483 0 0 1 0 1 Ribosome 1 0.500231643921092 0.946828961372376 0.999536712157815 hm5C_site_21616 DeepMRMD:0.946828961372376;iRNA_m5C:0.999536712157815 21617 chr20 60701443 60701443 1 + G A COAD 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTACGGCCCACTGGCGGCCAGCTCCCTGCTCAGCC < 41bp 1 0.675039488676507 1 0.452198296785355 experiment 0.649921022646985 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701443 synonymous SNV . 0 16 hm5C_associated_SNPs_20484 0 0 1 0 2 Ribosome 1 0.500231643922141 1 0.999536712155718 hm5C_site_21617 DeepMRMD:1;iRNA_m5C:0.999536712155718 21618 chr14 20943232 20943232 1 + G A COAD 20943217 + 20943197 20943237 41 GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTCC GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCATTTCC < 41bp 1 0.483608872228358 1 0.304251432418823 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 CDS Human protein_coding chr14:20943217 chr14:20943232 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_20485 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21618 DeepMRMD:1;iRNA_m5C:0.999536712157815 21619 chr16 23700975 23700975 1 + G A COAD 23700976 + 23700956 23700996 41 CTGCACCTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA CTGCACCTCAGCAACGGCAACGTGCAGATCAACTTCTTCCA < 41bp 1 0.233215549075734 1 0.334613859653473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700976 chr16:23700975 nonsynonymous SNV 0.913 2 20 hm5C_associated_SNPs_20486 0 0 1 0 1 Ribosome 1 0.500231644009567 1 0.999536711980866 hm5C_site_21619 DeepMRMD:1;iRNA_m5C:0.999536711980866 21620 chrX 41201825 41201825 1 + G A COAD 41201835 + 41201815 41201855 41 AAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATC AAATTTGAACATGGTGGAAACAGTCGCTGGTGTGACAAATC < 41bp 1 0.251223123826827 1 0.129067212343216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201835 chrX:41201825 nonsynonymous SNV 0.997 3 11 hm5C_associated_SNPs_20487 0 0 1 0 2 Nucleus 1 0.500231645235316 1 0.999536709529369 hm5C_site_21620 DeepMRMD:1;iRNA_m5C:0.999536709529369 21621 chr20 44512462 44512462 1 + G A COAD 44512456 + 44512436 44512476 41 GTGCCCGCCGCCAGGTGCTCCAGCCCGACATGCTGCCGGCT GTGCCCGCCGCCAGGTGCTCCAGCCCAACATGCTGCCGGCT < 41bp 1 0.332396832248145 1 0.783262252807617 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSWIM1 ENSG00000168612 CDS Human protein_coding chr20:44512456 chr20:44512462 nonsynonymous SNV 0.968 0 27 hm5C_associated_SNPs_20489 0 0 0 0 0 nucleus 1 0.500231643921092 0.433475494384766 0.999536712157815 hm5C_site_21621 DeepMRMD:0.433475494384766;iRNA_m5C:0.999536712157815 21622 chr15 91424646 91424646 1 + C T COAD 91424655 + 91424635 91424675 41 GCCAGCGTCTGCGCCCCCTGCCACGCCTCATGTGCCACATG GCCAGCGTCTGTGCCCCCTGCCACGCCTCATGTGCCACATG < 41bp 1 0.142236010790884 1 0.208321839570999 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FURIN ENSG00000140564 CDS Human protein_coding chr15:91424655 chr15:91424646 synonymous SNV . 0 12 hm5C_associated_SNPs_20490 0 0 1 0 0 Ribosome 1 0.500233738338231 1 0.999532523323538 hm5C_site_21622 DeepMRMD:1;iRNA_m5C:0.999532523323538 21623 chr3 49720279 49720279 1 + C T COAD 49720263 + 49720243 49720283 41 TTCCTGGGGCTGCAACAGCTCGGTGTCTTGCAGGTGCGTGG TTCCTGGGGCTGCAACAGCTCGGTGTCTTGCAGGTGTGTGG < 41bp 1 0.405120365654572 1 0.513238728046417 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49720263 chr3:49720279 synonymous SNV . 0 37 hm5C_associated_SNPs_20491 0 0 1 0 3 Cytosol 1 0.500231643921092 0.973522543907166 0.999536712157815 hm5C_site_21623 DeepMRMD:0.973522543907166;iRNA_m5C:0.999536712157815 21624 chr17 42225437 42225437 1 + C A COAD 42225441 + 42225421 42225461 41 TCCAGCACGCCCAGTGCTGACAGCCGTCCATCATGCATAGG TCCAGCACGCCCAGTGATGACAGCCGTCCATCATGCATAGG < 41bp 1 0.538001137592851 1 0.0553948879241943 experiment 0.923997724814298 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225441 chr17:42225437 nonsynonymous SNV 0.000 2 17 hm5C_associated_SNPs_20492 0 0 1 0 0 chromatin 1 0.500231643923192 1 0.999536712153617 hm5C_site_21624 DeepMRMD:1;iRNA_m5C:0.999536712153617 21625 chr17 42225437 42225437 1 + C A COAD 42225444 + 42225424 42225464 41 AGCACGCCCAGTGCTGACAGCCGTCCATCATGCATAGGAGC AGCACGCCCAGTGATGACAGCCGTCCATCATGCATAGGAGC < 41bp 1 0.0370622392123344 1 0.441643536090851 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225444 chr17:42225437 nonsynonymous SNV 0.000 2 14 hm5C_associated_SNPs_20493 0 0 1 0 0 chromatin 1 0.500231673642907 1 0.999536652714185 hm5C_site_21625 DeepMRMD:1;iRNA_m5C:0.999536652714185 21626 chr1 24996685 24996685 1 + C T COAD 24996673 + 24996653 24996693 41 CTCCCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA CTCCCGATCTGTCTCCGGGTCTCCTGAGCCAGTAGCTAAAA < 41bp 1 0.565716979042106 1 0.104140728712082 experiment 0.868566041915789 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996673 chr1:24996685 nonsynonymous SNV 0.999 1 33 hm5C_associated_SNPs_20494 0 0 1 0 1 Cytosol 1 0.500231643921164 1 0.999536712157671 hm5C_site_21626 DeepMRMD:1;iRNA_m5C:0.999536712157671 21627 chr1 24996685 24996685 1 + C T COAD 24996676 + 24996656 24996696 41 CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC CCGATCTGTCTCCGGGTCTCCTGAGCCAGTAGCTAAAAAGC < 41bp 1 0.578346269987622 1 0.543878138065338 experiment 0.843307460024757 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996676 chr1:24996685 nonsynonymous SNV 0.999 1 30 hm5C_associated_SNPs_20495 0 0 1 0 1 Cytosol 1 0.500231643921093 0.912243723869324 0.999536712157813 hm5C_site_21627 DeepMRMD:0.912243723869324;iRNA_m5C:0.999536712157813 21628 chr1 24996685 24996685 1 + C T COAD 24996681 + 24996661 24996701 41 CTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCA CTGTCTCCGGGTCTCCTGAGCCAGTAGCTAAAAAGCCCCCA < 41bp 1 0.331943879140862 1 0.38462969660759 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996681 chr1:24996685 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_20496 0 0 1 0 1 Cytosol 1 0.500231643921081 1 0.999536712157838 hm5C_site_21628 DeepMRMD:1;iRNA_m5C:0.999536712157838 21629 chr1 24996685 24996685 1 + C T COAD 24996696 + 24996676 24996716 41 CTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCC CTGAGCCAGTAGCTAAAAAGCCCCCAGCACCTCCATCCCCC < 41bp 1 0.361679130517757 1 0.0699065327644348 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996696 chr1:24996685 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_20498 0 0 1 0 1 Cytosol 1 0.500231643920913 1 0.999536712158175 hm5C_site_21629 DeepMRMD:1;iRNA_m5C:0.999536712158175 21630 chr1 24996685 24996685 1 + C T COAD 24996697 + 24996677 24996717 41 TGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCG TGAGCCAGTAGCTAAAAAGCCCCCAGCACCTCCATCCCCCG < 41bp 1 0.679942642530642 1 0.110869556665421 experiment 0.640114714938716 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996697 chr1:24996685 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_20499 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21630 DeepMRMD:1;iRNA_m5C:0.999536712157815 21631 chr1 24996685 24996685 1 + C T COAD 24996698 + 24996678 24996718 41 GAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGT GAGCCAGTAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGT < 41bp 1 0.241181083056882 1 0.0824381709098816 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996698 chr1:24996685 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_20500 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21631 DeepMRMD:1;iRNA_m5C:0.999536712157815 21632 chr1 24996685 24996685 1 + C T COAD 24996703 + 24996683 24996723 41 AGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGT AGTAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGT < 41bp 1 0.284399323054235 1 0.122780114412308 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996703 chr1:24996685 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_20501 0 0 1 0 1 Cytosol 1 0.50023164392112 1 0.999536712157761 hm5C_site_21632 DeepMRMD:1;iRNA_m5C:0.999536712157761 21633 chr1 24996685 24996685 1 + C T COAD 24996705 + 24996685 24996725 41 CAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCT TAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCT < 41bp 1 0.0529747263009247 1 0.0174517631530762 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996705 chr1:24996685 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_20502 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21633 DeepMRMD:1;iRNA_m5C:0.999536712157815 21634 chr8 123965567 123965567 1 + C T COAD 123965569 + 123965549 123965589 41 AAGGCCAAGATGTGGGAGCCCCCAATGGTGCTCTGTCTCGA AAGGCCAAGATGTGGGAGTCCCCAATGGTGCTCTGTCTCGA < 41bp 1 0.5157981241249 1 0.671586513519287 experiment 0.9684037517502 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZHX2 ENSG00000178764 CDS Human protein_coding chr8:123965569 chr8:123965567 nonsynonymous SNV 0.553 0 19 hm5C_associated_SNPs_20503 0 0 1 0 0 Nucleus 1 0.500231643921092 0.656826972961426 0.999536712157815 hm5C_site_21634 DeepMRMD:0.656826972961426;iRNA_m5C:0.999536712157815 21635 chr19 1037863 1037863 1 + A C COAD 1037846 + 1037826 1037866 41 GCACCGGCGACTGCCCGGACCCGGGGGAGGTCCCTGAATAT GCACCGGCGACTGCCCGGACCCGGGGGAGGTCCCTGACTAT < 41bp 1 0.683986245834702 1 0.847713947296143 experiment 0.632027508330596 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037846 chr19:1037863 nonsynonymous SNV 0.014 0 38 hm5C_associated_SNPs_20505 0 0 1 0 0 Ribosome 1 0.500231643923133 0.304572105407714 0.999536712153734 hm5C_site_21635 DeepMRMD:0.304572105407714;iRNA_m5C:0.999536712153734 21636 chr19 1037863 1037863 1 + A C COAD 1037857 + 1037837 1037877 41 TGCCCGGACCCGGGGGAGGTCCCTGAATATCCCCCTTACTA TGCCCGGACCCGGGGGAGGTCCCTGACTATCCCCCTTACTA < 41bp 1 0.249092753339007 1 0.154125034809113 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037857 chr19:1037863 nonsynonymous SNV 0.014 0 27 hm5C_associated_SNPs_20506 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21636 DeepMRMD:1;iRNA_m5C:0.999536712157815 21637 chr1 198231755 198231755 1 + A G COAD 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATGG < 41bp 1 0.166525003481408 1 0.104774653911591 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231755 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_20507 0 0 0 0 2 Nucleus 1 0.500231637020422 1 0.999536725959156 hm5C_site_21637 DeepMRMD:1;iRNA_m5C:0.999536725959156 21638 chr1 198231755 198231755 1 + A G COAD 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTGCTGATTGCATCAAAGAAATGGATCTTCTTAA < 41bp 1 0.316769495802762 1 0.615060687065125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231755 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_20508 0 0 0 0 2 Nucleus 1 0.50023163197576 0.76987862586975 0.999536736048481 hm5C_site_21638 DeepMRMD:0.76987862586975;iRNA_m5C:0.999536736048481 21639 chr1 198231755 198231755 1 + A G COAD 198231762 + 198231742 198231782 41 GCATCAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG GCATCAAAGAAATGGATCTTCTTAAGGTAATTAATGAACTG < 41bp 1 0.496250794804002 1 0.164832890033722 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231762 chr1:198231755 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_20509 0 0 0 0 2 Nucleus 1 0.500231643938357 1 0.999536712123287 hm5C_site_21639 DeepMRMD:1;iRNA_m5C:0.999536712123287 21640 chr12 121858086 121858086 1 + T C COAD 121858092 + 121858072 121858112 41 ACAGAAGATGATGATGACGACGATGATGAGGATGATGATGA ACAGAAGATGATGACGACGACGATGATGAGGATGATGATGA < 41bp 1 0.363145974774843 1 0.290982663631439 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858092 chr12:121858086 synonymous SNV . 0 15 hm5C_associated_SNPs_20510 0 0 1 0 2 chromatin 1 0.500232931472861 1 0.999534137054278 hm5C_site_21640 DeepMRMD:1;iRNA_m5C:0.999534137054278 21641 chr21 38853079 38853079 1 + T C COAD 38853089 + 38853069 38853109 41 GAAAAGTGGATGGATCGTTACGAAATTGACTCCTTGATAGG GAAAAGTGGACGGATCGTTACGAAATTGACTCCTTGATAGG < 41bp 1 0.630850823396587 1 0.766120195388794 experiment 0.738298353206825 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38853089 chr21:38853079 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_20511 0 0 1 0 1 Cytosol 1 0.500231643910674 0.467759609222412 0.999536712178652 hm5C_site_21641 DeepMRMD:0.467759609222412;iRNA_m5C:0.999536712178652 21642 chr11 562380 562380 1 + G T COAD 562379 + 562359 562399 41 CCTCTCACGCCCTGGGCCTGCGGCCCCTGTGACACCCACAC CCTCTCACGCCCTGGGCCTGCTGCCCCTGTGACACCCACAC < 41bp 1 0.475205196785869 1 0.163224846124649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RASSF7 ENSG00000099849 CDS Human protein_coding chr11:562379 chr11:562380 synonymous SNV . 0 22 hm5C_associated_SNPs_20512 0 0 0 0 0 exosome 1 0.500231653535478 1 0.999536692929044 hm5C_site_21642 DeepMRMD:1;iRNA_m5C:0.999536692929044 21643 chr15 22945047 22945047 1 + C T COAD 22945057 + 22945037 22945077 41 CAGGTGGTCACGGGCTCGGGCCGCCAGGAGGCCCAGAAGAC CAGGTGGTCATGGGCTCGGGCCGCCAGGAGGCCCAGAAGAC < 41bp 1 0.167372198284732 1 0.162616163492203 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22945057 chr15:22945047 nonsynonymous SNV . 0 11 hm5C_associated_SNPs_20513 0 0 1 0 1 Cytosol 1 0.500231665389816 1 0.999536669220368 hm5C_site_21643 DeepMRMD:1;iRNA_m5C:0.999536669220368 21644 chr7 142460327 142460327 1 + G A COAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAA < 41bp 1 0.210878748724131 1 0.0886127054691315 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460327 nonsynonymous SNV 0.000 2 41 hm5C_associated_SNPs_20514 0 0 0 0 2 Cytosol 1 0.500234344210579 1 0.999531311578842 hm5C_site_21644 DeepMRMD:1;iRNA_m5C:0.999531311578842 21645 chr7 142460327 142460327 1 + G A COAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAACCAGGCTA < 41bp 1 0.44801677688428 1 0.339534997940063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460327 nonsynonymous SNV 0.000 2 33 hm5C_associated_SNPs_20515 0 0 0 0 2 Cytosol 1 0.500231655871838 1 0.999536688256324 hm5C_site_21645 DeepMRMD:1;iRNA_m5C:0.999536688256324 21646 chr7 142460327 142460327 1 + G A COAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGCTGAACCAGGCTAAG < 41bp 1 0.251075505922477 1 0.159035176038742 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460327 nonsynonymous SNV 0.000 2 31 hm5C_associated_SNPs_20516 0 0 0 0 2 Cytosol 1 0.500231643929411 1 0.999536712141178 hm5C_site_21646 DeepMRMD:1;iRNA_m5C:0.999536712141178 21647 chr7 142460327 142460327 1 + G A COAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGCTGAACCAGGCTAAGT < 41bp 1 0.462772494267543 1 0.208800733089447 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460327 nonsynonymous SNV 0.000 2 30 hm5C_associated_SNPs_20517 0 0 0 0 2 Cytosol 1 0.500231643922293 1 0.999536712155415 hm5C_site_21647 DeepMRMD:1;iRNA_m5C:0.999536712155415 21648 chr7 142460327 142460327 1 + G A COAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTGAACCAGGCTAAGTGTGAA < 41bp 1 0.606536858755723 1 0.149352729320526 experiment 0.786926282488554 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460327 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_20518 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21648 DeepMRMD:1;iRNA_m5C:0.999536712157815 21649 chr7 142460327 142460327 1 + G A COAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAACCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.366374160347501 1 0.147318631410599 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460327 nonsynonymous SNV 0.000 2 20 hm5C_associated_SNPs_20519 0 0 0 0 2 Cytosol 1 0.500231643948254 1 0.999536712103493 hm5C_site_21649 DeepMRMD:1;iRNA_m5C:0.999536712103493 21650 chr7 142460327 142460327 1 + G A COAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAACCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.604187327573883 1 0.664072811603546 experiment 0.791625344852233 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460327 nonsynonymous SNV 0.000 2 19 hm5C_associated_SNPs_20520 0 0 0 0 2 Cytosol 1 0.500231729448035 0.671854376792908 0.999536541103931 hm5C_site_21650 DeepMRMD:0.671854376792908;iRNA_m5C:0.999536541103931 21651 chr7 142460327 142460327 1 + G A COAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAACCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.39479300826976 1 0.0891532599925995 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460327 nonsynonymous SNV 0.000 2 15 hm5C_associated_SNPs_20521 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21651 DeepMRMD:1;iRNA_m5C:0.999536712157815 21652 chr7 142460327 142460327 1 + G A COAD 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAACCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0388572103420721 1 0.153243720531464 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460327 nonsynonymous SNV 0.000 2 3 hm5C_associated_SNPs_20522 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21652 DeepMRMD:1;iRNA_m5C:0.999536712157815 21653 chr7 142460327 142460327 1 + G A COAD 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AACCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.235701270534826 1 0.50637024641037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460327 nonsynonymous SNV 0.000 2 2 hm5C_associated_SNPs_20523 0 0 0 0 2 Cytosol 1 0.500231151033114 0.98725950717926 0.999537697933772 hm5C_site_21653 DeepMRMD:0.98725950717926;iRNA_m5C:0.999537697933772 21654 chr6 160477541 160477541 1 + C T COAD 160477524 + 160477504 160477544 41 CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAATGAC < 41bp 1 0.032220178181498 1 0.0757785737514496 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160477524 chr6:160477541 nonsynonymous SNV 0.074 0 38 hm5C_associated_SNPs_20524 0 0 1 0 2 Endoplasmic reticulum 1 0.500231640508916 1 0.999536718982168 hm5C_site_21654 DeepMRMD:1;iRNA_m5C:0.999536718982168 21655 chr11 61916012 61916012 1 + G A COAD 61915994 + 61915974 61916014 41 TGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAG TGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGAAG < 41bp 1 0.589645229074367 1 0.704985618591309 experiment 0.820709541851266 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915994 chr11:61916012 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_20525 0 0 1 0 1 chromatin 1 0.500232283238622 0.590028762817382 0.999535433522756 hm5C_site_21655 DeepMRMD:0.590028762817382;iRNA_m5C:0.999535433522756 21656 chr11 61916012 61916012 1 + G A COAD 61915997 + 61915977 61916017 41 GGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAGAAG GGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGAAGAAG < 41bp 1 0.349949657853287 1 0.569162607192993 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61915997 chr11:61916012 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_20526 0 0 1 0 1 chromatin 1 0.500231643921092 0.861674785614014 0.999536712157815 hm5C_site_21656 DeepMRMD:0.861674785614014;iRNA_m5C:0.999536712157815 21657 chr17 12028670 12028670 1 + G T COAD 12028682 + 12028662 12028702 41 GATGTCTGGAGTTTGGGGATCACATTGGTATGTTTATGCTG GATGTCTGTAGTTTGGGGATCACATTGGTATGTTTATGCTG < 41bp 1 0.383231020534006 1 0.169388860464096 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028682 chr17:12028670 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_20527 0 0 1 0 2 chromatin 1 0.500233388404712 1 0.999533223190577 hm5C_site_21657 DeepMRMD:1;iRNA_m5C:0.999533223190577 21658 chr19 17273174 17273174 1 + C T COAD 17273167 + 17273147 17273187 41 TCTGTGTCCACAGGCCATCACTGCCCGCGACTCCATGGCCA TCTGTGTCCACAGGCCATCACTGCCCGTGACTCCATGGCCA < 41bp 1 0.240516863465168 1 0.13729602098465 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17273167 chr19:17273174 synonymous SNV . 0 28 hm5C_associated_SNPs_20528 0 0 1 0 1 Nucleus 1 0.500231644092156 1 0.999536711815688 hm5C_site_21658 DeepMRMD:1;iRNA_m5C:0.999536711815688 21659 chr3 42264530 42264530 1 + T G COAD 42264511 + 42264491 42264531 41 GGTGGCCACACCATGCACTCCACGGAGACTGAGCCTGGCTG GGTGGCCACACCATGCACTCCACGGAGACTGAGCCTGGCGG < 41bp 1 0.526571258991064 1 0.387465059757233 experiment 0.946857482017872 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42264511 chr3:42264530 synonymous SNV . 0 40 hm5C_associated_SNPs_20529 0 0 1 0 1 Cytosol 1 0.500231643921497 1 0.999536712157006 hm5C_site_21659 DeepMRMD:1;iRNA_m5C:0.999536712157006 21660 chr1 16255143 16255143 1 + A G COAD 16255130 + 16255110 16255150 41 ATAAAGAACGAACTTTTGATCCGGAGAGAGTGGAGAGAGAG ATAAAGAACGAACTTTTGATCCGGAGAGAGTGGGGAGAGAG < 41bp 1 0.490844225742424 1 0.375595092773438 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16255130 chr1:16255143 nonsynonymous SNV 0.809 2 34 hm5C_associated_SNPs_20530 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920912 1 0.999536712158175 hm5C_site_21660 DeepMRMD:1;iRNA_m5C:0.999536712158175 21661 chr9 116269709 116269709 1 + T C COAD 116269708 + 116269688 116269728 41 CCCAACAAACGGGAGAAGAACTGCACCCATGGGGTCCAGGC CCCAACAAACGGGAGAAGAACCGCACCCATGGGGTCCAGGC < 41bp 1 0.542248498296698 1 0.18936225771904 experiment 0.915503003406604 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS3 ENSG00000138835 CDS Human protein_coding chr9:116269708 chr9:116269709 nonsynonymous SNV 0.955 2 22 hm5C_associated_SNPs_20531 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_21661 DeepMRMD:1;iRNA_m5C:0.999536712157813 21662 chr1 228468281 228468281 1 + C T COAD 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCAGAGGAGTGCGGCACCCTGGCCCTGCAGTGTGAAGT < 41bp 1 0.0518551986074202 1 0.078603208065033 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468281 nonsynonymous SNV 0.001 3 13 hm5C_associated_SNPs_20532 0 0 0 0 1 Ribosome 1 0.500231643921053 1 0.999536712157893 hm5C_site_21662 DeepMRMD:1;iRNA_m5C:0.999536712157893 21663 chr5 139866560 139866560 1 + G A COAD 139866547 + 139866527 139866567 41 TGAGTTGACTTTTTAGGTGCCACGTGTGCCAACGCATACAC TGAGTTGACTTTTTAGGTGCCACGTGTGCCAACACATACAC < 41bp 1 0.449823249284672 1 0.186759859323502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139866547 chr5:139866560 synonymous SNV . 0 34 hm5C_associated_SNPs_20533 0 0 1 0 2 unknown 1 0.500283323759043 1 0.999433352481913 hm5C_site_21663 DeepMRMD:1;iRNA_m5C:0.999433352481913 21664 chr19 41111425 41111425 1 + C G COAD 41111411 + 41111391 41111431 41 GGCCCTTGGGAGGAGGCGGACGCTGAGGCGGTGGCGCGGGC GGCCCTTGGGAGGAGGCGGACGCTGAGGCGGTGGGGCGGGC < 41bp 1 0.587487782863616 1 0.50154834985733 experiment 0.825024434272768 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41111411 chr19:41111425 nonsynonymous SNV 0.380 0 35 hm5C_associated_SNPs_20534 0 0 1 0 0 Cytosol 1 0.500231643920972 0.99690330028534 0.999536712158057 hm5C_site_21664 DeepMRMD:0.99690330028534;iRNA_m5C:0.999536712158057 21665 chr9 91083305 91083305 1 + A G COAD 91083287 + 91083267 91083307 41 TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCGATG TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCGGTG < 41bp 1 0.365403521278532 1 0.641505897045135 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91083287 chr9:91083305 nonsynonymous SNV 0.987 1 39 hm5C_associated_SNPs_20535 0 0 1 0 1 Cytosol 1 0.500231643924165 0.71698820590973 0.999536712151669 hm5C_site_21665 DeepMRMD:0.71698820590973;iRNA_m5C:0.999536712151669 21666 chr2 238976790 238976790 1 + C T COAD 238976802 + 238976782 238976822 41 AATCTTCACTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA AATCTTCATTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA < 41bp 1 0.396815331803532 1 0.17165008187294 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCLY ENSG00000132330 CDS Human protein_coding chr2:238976802 chr2:238976790 nonsynonymous SNV 0.650 5 9 hm5C_associated_SNPs_20536 0 0 1 0 2 Ribosome 1 0.50023164392316 1 0.99953671215368 hm5C_site_21666 DeepMRMD:1;iRNA_m5C:0.99953671215368 21667 chr10 75551702 75551702 1 + G T COAD 75551705 + 75551685 75551725 41 AACACAAGAAGACGCTGGAGCGGCTCTTCCCCGGCTTCCGG AACACAAGAAGACGCTGTAGCGGCTCTTCCCCGGCTTCCGG < 41bp 1 0.523324726460681 1 0.491052836179733 experiment 0.953350547078638 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75551705 chr10:75551702 stopgain 0.993 0 18 hm5C_associated_SNPs_20537 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21667 DeepMRMD:1;iRNA_m5C:0.999536712157815 21668 chr13 26956983 26956983 1 + T C COAD 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TTTTAGTTATGGGTGAAGGCCCTGAGCGAGGAAGAGTAAAA < 41bp 1 0.181524382894622 1 0.105451673269272 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956983 synonymous SNV . 0 20 hm5C_associated_SNPs_20538 0 0 1 0 2 Cytosol 1 0.500231643921098 1 0.999536712157804 hm5C_site_21668 DeepMRMD:1;iRNA_m5C:0.999536712157804 21669 chr19 33167268 33167268 1 + G A COAD 33167256 + 33167236 33167276 41 CTGGTGCTGACCGTCGGTGGCTCGGCGGACTCGCAGAACCT CTGGTGCTGACCGTCGGTGGCTCGGCGGACTCACAGAACCT < 41bp 1 0.683220524175395 1 0.540461897850037 experiment 0.63355895164921 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RGS9BP ENSG00000186326 CDS Human protein_coding chr19:33167256 chr19:33167268 synonymous SNV . 0 33 hm5C_associated_SNPs_20539 0 0 1 0 0 exosome 1 0.500231644395544 0.919076204299926 0.999536711208913 hm5C_site_21669 DeepMRMD:0.919076204299926;iRNA_m5C:0.999536711208913 21670 chr19 33167268 33167268 1 + G A COAD 33167261 + 33167241 33167281 41 GCTGACCGTCGGTGGCTCGGCGGACTCGCAGAACCTGCGGC GCTGACCGTCGGTGGCTCGGCGGACTCACAGAACCTGCGGC < 41bp 1 0.566730479202649 1 0.4817214012146 experiment 0.866539041594703 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RGS9BP ENSG00000186326 CDS Human protein_coding chr19:33167261 chr19:33167268 synonymous SNV . 0 28 hm5C_associated_SNPs_20540 0 0 1 0 0 exosome 1 0.500231643933619 1 0.999536712132762 hm5C_site_21670 DeepMRMD:1;iRNA_m5C:0.999536712132762 21671 chr20 30822387 30822387 1 + C T COAD 30822376 + 30822356 30822396 41 CTGTGTCTCCTCCTTCACTGCCTTTGTGAAGCGGGAGCGGG CTGTGTCTCCTCCTTCACTGCCTTTGTGAAGTGGGAGCGGG < 41bp 1 0.0558320924627369 1 0.0359227955341339 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POFUT1 ENSG00000101346 CDS Human protein_coding chr20:30822376 chr20:30822387 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_20541 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920982 1 0.999536712158037 hm5C_site_21671 DeepMRMD:1;iRNA_m5C:0.999536712158037 21672 chr2 32673990 32673990 1 + C A COAD 32673982 + 32673962 32674002 41 GTCAGATGAAATTGATTTATCAGATGTCCTTTCAGGTAGTG GTCAGATGAAATTGATTTATCAGATGTCATTTCAGGTAGTG < 41bp 1 0.144969131090884 1 0.414455533027649 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673982 chr2:32673990 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_20542 0 0 1 0 1 Nucleus 1 0.50023162929997 1 0.99953674140006 hm5C_site_21672 DeepMRMD:1;iRNA_m5C:0.99953674140006 21673 chr2 32673990 32673990 1 + C A COAD 32673989 + 32673969 32674009 41 GAAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTT GAAATTGATTTATCAGATGTCATTTCAGGTAGTGATTTCTT < 41bp 1 0.0131628747405202 1 0.0210238099098206 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673989 chr2:32673990 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_20543 0 0 1 0 1 Nucleus 1 0.500231643921082 1 0.999536712157836 hm5C_site_21673 DeepMRMD:1;iRNA_m5C:0.999536712157836 21674 chr2 32673990 32673990 1 + C A COAD 32673994 + 32673974 32674014 41 TGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTTTATT TGATTTATCAGATGTCATTTCAGGTAGTGATTTCTTTTATT < 41bp 1 0.189517249950655 1 0.258821070194244 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673994 chr2:32673990 nonsynonymous SNV 0.999 1 17 hm5C_associated_SNPs_20544 0 0 1 0 1 Nucleus 1 0.500232583154826 1 0.999534833690348 hm5C_site_21674 DeepMRMD:1;iRNA_m5C:0.999534833690348 21675 chr19 33202820 33202820 1 + A G COAD 33202807 + 33202787 33202827 41 ATATCCACGTGACTGTTCAGCCAAAGTATAAACACGTTTAT ATATCCACGTGACTGTTCAGCCAAAGTATAAACGCGTTTAT < 41bp 1 0.341678135412362 1 0.166741818189621 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUDT19 ENSG00000213965 CDS Human protein_coding chr19:33202807 chr19:33202820 nonsynonymous SNV 0.027 3 34 hm5C_associated_SNPs_20545 0 0 1 0 0 Ribosome 1 0.500236737547668 1 0.999526524904663 hm5C_site_21675 DeepMRMD:1;iRNA_m5C:0.999526524904663 21676 chr8 144732962 144732962 1 + T G COAD 144732951 + 144732931 144732971 41 GGGAAGGCATTCCGTCATCGCTCAGACCTTATTGAACACCA GGGAAGGCATTCCGTCATCGCTCAGACCTTAGTGAACACCA < 41bp 1 0.541286399665399 1 0.21034175157547 experiment 0.917427200669202 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF623 ENSG00000183309 CDS Human protein_coding chr8:144732951 chr8:144732962 nonsynonymous SNV 0.001 0 32 hm5C_associated_SNPs_20547 0 0 1 0 0 cytosol 1 0.50023164900978 1 0.99953670198044 hm5C_site_21676 DeepMRMD:1;iRNA_m5C:0.99953670198044 21677 chr16 31235570 31235570 1 + C T COAD 31235556 + 31235536 31235576 41 GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCTGCGTGG < 41bp 1 0.276708987976032 1 0.0725590884685516 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235556 chr16:31235570 nonsynonymous SNV 0.974 0 35 hm5C_associated_SNPs_20548 0 0 0 0 1 exosome 1 0.500231403722513 1 0.999537192554973 hm5C_site_21677 DeepMRMD:1;iRNA_m5C:0.999537192554973 21678 chr21 38865413 38865413 1 + G A COAD 38865404 + 38865384 38865424 41 CCTTGCCATTGATATGTGGTCCCTCGGGTGTATTTTGGTTG CCTTGCCATTGATATGTGGTCCCTCGGGTATATTTTGGTTG < 41bp 1 0.123494660122221 1 0.0566667914390564 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38865404 chr21:38865413 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_20549 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21678 DeepMRMD:1;iRNA_m5C:0.999536712157815 21679 chr3 58092574 58092574 1 + G A COAD 58092593 + 58092573 58092613 41 AGCCACGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC AACCACGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC < 41bp 1 0.356152102931296 1 0.220216125249863 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092593 chr3:58092574 nonsynonymous SNV 0.488 2 2 hm5C_associated_SNPs_20550 0 0 1 0 1 Cytosol 1 0.50023164392109 1 0.999536712157819 hm5C_site_21679 DeepMRMD:1;iRNA_m5C:0.999536712157819 21680 chr12 12940255 12940255 1 + A G COAD 12940241 + 12940221 12940261 41 CAGGACCAGATGCGAGAGATCCTGAGCTGCCTCGAGTTTTT CAGGACCAGATGCGAGAGATCCTGAGCTGCCTCGGGTTTTT < 41bp 1 0.529891972541958 1 0.145912557840347 experiment 0.940216054916085 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APOLD1 ENSG00000178878 CDS Human protein_coding chr12:12940241 chr12:12940255 nonsynonymous SNV 0.948 1 35 hm5C_associated_SNPs_20551 0 0 0 0 0 Cytosol 1 0.500231643930005 1 0.999536712139991 hm5C_site_21680 DeepMRMD:1;iRNA_m5C:0.999536712139991 21681 chr11 6629279 6629279 1 + C T COAD 6629293 + 6629273 6629313 41 AAGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCC AAGGGATGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCC < 41bp 1 0.24775960783338 1 0.392025291919708 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629293 chr11:6629279 synonymous SNV . 0 7 hm5C_associated_SNPs_20552 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157813 hm5C_site_21681 DeepMRMD:1;iRNA_m5C:0.999536712157813 21682 chr11 6629279 6629279 1 + C T COAD 6629294 + 6629274 6629314 41 AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG AGGGATGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG < 41bp 1 0.212075107100917 1 0.0995577573776245 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629294 chr11:6629279 synonymous SNV . 0 6 hm5C_associated_SNPs_20553 0 0 1 0 1 Endoplasmic reticulum 1 0.500231663648511 1 0.999536672702978 hm5C_site_21682 DeepMRMD:1;iRNA_m5C:0.999536672702978 21683 chr19 19654602 19654602 1 + C T COAD 19654593 + 19654573 19654613 41 CCTGCCTACCTGGATGTGGGCCTCTGTCCCGACACCCGCTG CCTGCCTACCTGGATGTGGGCCTCTGTCCTGACACCCGCTG < 41bp 1 0.0933035604527423 1 0.0589438080787659 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19654593 chr19:19654602 synonymous SNV . 0 30 hm5C_associated_SNPs_20554 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21683 DeepMRMD:1;iRNA_m5C:0.999536712157815 21684 chr12 132547126 132547126 1 + G A COAD 132547130 + 132547110 132547150 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG AGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAG < 41bp 1 0.583450840225408 1 0.739437460899353 experiment 0.833098319549184 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132547130 chr12:132547126 synonymous SNV . 0 17 hm5C_associated_SNPs_20555 0 0 0 0 0 Cytosol 1 0.500231834595766 0.521125078201294 0.999536330808468 hm5C_site_21684 DeepMRMD:0.521125078201294;iRNA_m5C:0.999536330808468 21685 chr20 2844843 2844843 1 + C T COAD 2844855 + 2844835 2844875 41 ATGAGCCACGCTCAGGGGAGCAGGTACCCCTTCTCCTAAAG ATGAGCCATGCTCAGGGGAGCAGGTACCCCTTCTCCTAAAG < 41bp 1 0.500159242630505 1 0.436193019151688 experiment 0.99968151473899 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844855 chr20:2844843 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_20556 0 0 1 0 1 chromatin 1 0.500231643921091 1 0.999536712157817 hm5C_site_21685 DeepMRMD:1;iRNA_m5C:0.999536712157817 21686 chr9 71842728 71842728 1 + C T COAD 71842734 + 71842714 71842754 41 CTCCAGAGGAGAGACGTCATCAGTATTCTGATTATGATTAT CTCCAGAGGAGAGATGTCATCAGTATTCTGATTATGATTAT < 41bp 1 0.608040590058577 1 0.534609854221344 experiment 0.783918819882845 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71842734 chr9:71842728 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_20557 1 0 1 0 2 Nucleus 1 0.50023164392155 0.930780291557312 0.9995367121569 hm5C_site_21686 DeepMRMD:0.930780291557312;iRNA_m5C:0.9995367121569 not specified not specified 21687 chr13 115037794 115037794 1 + T G COAD 115037793 + 115037773 115037813 41 AGACTGCAGAAGAAACGGGGCTTACGCCATTGGAAACCTCA AGACTGCAGAAGAAACGGGGCGTACGCCATTGGAAACCTCA < 41bp 1 0.0964199675698408 1 0.0802081227302551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC16 ENSG00000130177 CDS Human protein_coding chr13:115037793 chr13:115037794 nonsynonymous SNV 0.228 1 22 hm5C_associated_SNPs_20558 0 0 1 0 0 Ribosome 1 0.500231643898162 1 0.999536712203677 hm5C_site_21687 DeepMRMD:1;iRNA_m5C:0.999536712203677 21688 chr17 78078638 78078638 1 + C T COAD 78078646 + 78078626 78078666 41 CAGTGCGACGTCCCCCCCAACAGCCGCTTCGATTGCGCCCC CAGTGCGACGTCTCCCCCAACAGCCGCTTCGATTGCGCCCC < 41bp 1 0.340030439467914 1 0.696171641349792 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78078646 chr17:78078638 nonsynonymous SNV 0.282 0 13 hm5C_associated_SNPs_20561 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.607656717300416 0.999536712157815 hm5C_site_21688 DeepMRMD:0.607656717300416;iRNA_m5C:0.999536712157815 21689 chr6 42975948 42975948 1 + C T COAD 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTATGAGACGGAGCATCACAACGGGATTGCTGAG < 41bp 1 0.295615273540018 1 0.0487948358058929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975948 synonymous SNV . 0 11 hm5C_associated_SNPs_20562 0 0 1 0 2 Ribosome 1 0.500231682327584 1 0.999536635344832 hm5C_site_21689 DeepMRMD:1;iRNA_m5C:0.999536635344832 21690 chr1 37947355 37947355 1 + A G COAD 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATCGTGGTTTCCAACGACACATGCCGTGACCTCCAAGG < 41bp 1 0.339007708010199 1 0.346810162067413 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947355 nonsynonymous SNV 0.840 4 26 hm5C_associated_SNPs_20563 0 0 0 0 1 Nucleus 1 0.5002316439353 1 0.9995367121294 hm5C_site_21690 DeepMRMD:1;iRNA_m5C:0.9995367121294 21691 chr1 37947355 37947355 1 + A G COAD 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATCGTGGTTTCCAACGACACATGCCGTGACCTCCAAGGCG < 41bp 1 0.319408180234867 1 0.149364799261093 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947355 nonsynonymous SNV 0.840 4 24 hm5C_associated_SNPs_20564 0 0 0 0 1 Nucleus 1 0.500231643902051 1 0.999536712195897 hm5C_site_21691 DeepMRMD:1;iRNA_m5C:0.999536712195897 21692 chr21 30714989 30714989 1 + C A COAD 30714981 + 30714961 30715001 41 CTGACCGGCCTCCAGCAGTGCTGCCTCCCTGTGCCAGAGGA CTGACCGGCCTCCAGCAGTGCTGCCTCCATGTGCCAGAGGA < 41bp 1 0.290436415474615 1 0.0638453662395477 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BACH1 ENSG00000156273 CDS Human protein_coding chr21:30714981 chr21:30714989 synonymous SNV . 0 29 hm5C_associated_SNPs_20566 0 0 1 0 0 Cytosol 1 0.500231654874745 1 0.999536690250511 hm5C_site_21692 DeepMRMD:1;iRNA_m5C:0.999536690250511 21693 chr8 9413799 9413799 1 + C A COAD 9413797 + 9413777 9413817 41 ACTTCATCTGCCGCTGGGGTCGCTCCCAACCCAGCCGGCAG ACTTCATCTGCCGCTGGGGTCGATCCCAACCCAGCCGGCAG < 41bp 1 0.163483478867141 1 0.400347083806992 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9413797 chr8:9413799 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_20569 0 0 1 0 0 Nucleus 1 0.500231643921029 1 0.999536712157941 hm5C_site_21693 DeepMRMD:1;iRNA_m5C:0.999536712157941 21694 chr19 2341133 2341133 1 + C T COAD 2341147 + 2341127 2341167 41 CAGCACCGCGTGATGAAGAGCCCTGGCCCCGGGCTGCTCTG CAGCACTGCGTGATGAAGAGCCCTGGCCCCGGGCTGCTCTG < 41bp 1 0.118861590771455 1 0.22504860162735 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2341147 chr19:2341133 . . 0 7 hm5C_associated_SNPs_20570 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643906739 1 0.999536712186522 hm5C_site_21694 DeepMRMD:1;iRNA_m5C:0.999536712186522 21695 chr10 3176689 3176689 1 + T C COAD 3176685 + 3176665 3176705 41 CCACCAACAGGGTGGGGCACCCTCTCCATTTGATAGAAACT CCACCAACAGGGTGGGGCACCCTCCCCATTTGATAGAAACT < 41bp 1 0.00675278564875763 1 0.11449933052063 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3176685 chr10:3176689 synonymous SNV . 0 25 hm5C_associated_SNPs_20571 0 0 1 0 1 Nucleus 1 0.500231643921074 1 0.999536712157853 hm5C_site_21695 DeepMRMD:1;iRNA_m5C:0.999536712157853 21696 chr10 3176689 3176689 1 + T C COAD 3176688 + 3176668 3176708 41 CCAACAGGGTGGGGCACCCTCTCCATTTGATAGAAACTTTG CCAACAGGGTGGGGCACCCTCCCCATTTGATAGAAACTTTG < 41bp 1 0.462380599013996 1 0.737730860710144 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3176688 chr10:3176689 synonymous SNV . 0 22 hm5C_associated_SNPs_20572 0 0 1 0 1 Nucleus 1 0.500231643920058 0.524538278579712 0.999536712159884 hm5C_site_21696 DeepMRMD:0.524538278579712;iRNA_m5C:0.999536712159884 21697 chr15 69003140 69003140 1 + G A COAD 69003148 + 69003128 69003168 41 CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTCGA CTGGAGCTGCACAGGCACAGCCGGCGTGTGGGGCTGGTCGA < 41bp 1 0.517248820752494 1 0.651085734367371 experiment 0.965502358495012 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69003148 chr15:69003140 nonsynonymous SNV 0.992 4 13 hm5C_associated_SNPs_20573 0 0 0 0 2 exosome 1 0.50023164393269 0.697828531265258 0.99953671213462 hm5C_site_21697 DeepMRMD:0.697828531265258;iRNA_m5C:0.99953671213462 21698 chr22 32889242 32889242 1 + G A COAD 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAAGTTTTTATATCTGCGTGATTTTCGAGGTGAT < 41bp 1 0.530411392636174 1 0.248434334993362 experiment 0.939177214727651 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889242 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_20574 0 0 1 0 1 chromatin 1 0.500231641956559 1 0.999536716086882 hm5C_site_21698 DeepMRMD:1;iRNA_m5C:0.999536716086882 21699 chr8 68074138 68074138 1 + T C COAD 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGACAGCATCATACGCTCCTTTATTCATGTATGTACTTT < 41bp 1 0.153968555705857 1 0.0297565758228302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074138 synonymous SNV . 0 18 hm5C_associated_SNPs_20575 0 0 0 0 2 Cytosol 1 0.500232422198272 1 0.999535155603456 hm5C_site_21699 DeepMRMD:1;iRNA_m5C:0.999535155603456 21700 chr12 132445655 132445655 1 + G A COAD 132445639 + 132445619 132445659 41 CAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGCAGCAGC CAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGCAACAGC < 41bp 1 0.378823641109515 1 0.357883036136627 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132445639 chr12:132445655 nonsynonymous SNV 0.560 1 37 hm5C_associated_SNPs_20577 0 0 0 0 0 Cytosol 1 0.500231643924793 1 0.999536712150414 hm5C_site_21700 DeepMRMD:1;iRNA_m5C:0.999536712150414 21701 chrX 100880684 100880684 1 + C T COAD 100880681 + 100880661 100880701 41 TGACTGTTACTAATGAGTATCAGCACATGCTTGCTAATTCC TGACTGTTACTAATGAGTATCAGTACATGCTTGCTAATTCC < 41bp 1 0.435522935438775 1 0.747013449668884 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880681 chrX:100880684 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_20578 0 0 1 0 0 Endoplasmic reticulum 1 0.500231653653913 0.505973100662232 0.999536692692174 hm5C_site_21701 DeepMRMD:0.505973100662232;iRNA_m5C:0.999536692692174 21702 chrX 100880684 100880684 1 + C T COAD 100880686 + 100880666 100880706 41 GTTACTAATGAGTATCAGCACATGCTTGCTAATTCCATTTC GTTACTAATGAGTATCAGTACATGCTTGCTAATTCCATTTC < 41bp 1 0.33153676052068 1 0.0189753472805023 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880686 chrX:100880684 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_20579 0 0 1 0 0 Endoplasmic reticulum 1 0.500232126904423 1 0.999535746191155 hm5C_site_21702 DeepMRMD:1;iRNA_m5C:0.999535746191155 21703 chr1 33957280 33957280 1 + A G COAD 33957260 + 33957240 33957280 41 ATGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCA ATGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCG < 41bp 1 0.249532665865082 1 0.079774796962738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957260 chr1:33957280 synonymous SNV . 0 41 hm5C_associated_SNPs_20580 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21703 DeepMRMD:1;iRNA_m5C:0.999536712157815 21704 chr1 33957280 33957280 1 + A G COAD 33957261 + 33957241 33957281 41 TGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCAG TGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCGG < 41bp 1 0.579791986617449 1 0.369622826576233 experiment 0.840416026765102 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957261 chr1:33957280 synonymous SNV . 0 40 hm5C_associated_SNPs_20581 0 0 0 0 1 exosome 1 0.500231643915064 1 0.999536712169871 hm5C_site_21704 DeepMRMD:1;iRNA_m5C:0.999536712169871 21705 chr1 33957280 33957280 1 + A G COAD 33957276 + 33957256 33957296 41 GGGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTC GGGGCCCAGGATTGCAGGGGCCCCGGCTCTGTTCCAGAGTC < 41bp 1 0.314585931238859 1 0.166040182113647 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957276 chr1:33957280 synonymous SNV . 0 25 hm5C_associated_SNPs_20582 0 0 0 0 1 exosome 1 0.500231643957129 1 0.999536712085743 hm5C_site_21705 DeepMRMD:1;iRNA_m5C:0.999536712085743 21706 chr1 33957280 33957280 1 + A G COAD 33957277 + 33957257 33957297 41 GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCG GGGCCCAGGATTGCAGGGGCCCCGGCTCTGTTCCAGAGTCG < 41bp 1 0.447636382686215 1 0.130373179912567 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957277 chr1:33957280 synonymous SNV . 0 24 hm5C_associated_SNPs_20583 0 0 0 0 1 exosome 1 0.500231643921089 1 0.999536712157822 hm5C_site_21706 DeepMRMD:1;iRNA_m5C:0.999536712157822 21707 chr1 33957280 33957280 1 + A G COAD 33957278 + 33957258 33957298 41 GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGT GGCCCAGGATTGCAGGGGCCCCGGCTCTGTTCCAGAGTCGT < 41bp 1 0.181054740486296 1 0.154533177614212 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957278 chr1:33957280 synonymous SNV . 0 23 hm5C_associated_SNPs_20584 0 0 0 0 1 exosome 1 0.500231643920582 1 0.999536712158836 hm5C_site_21707 DeepMRMD:1;iRNA_m5C:0.999536712158836 21708 chr1 33957280 33957280 1 + A G COAD 33957279 + 33957259 33957299 41 GCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTA GCCCAGGATTGCAGGGGCCCCGGCTCTGTTCCAGAGTCGTA < 41bp 1 0.463545866462925 1 0.0932438373565674 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957279 chr1:33957280 synonymous SNV . 0 22 hm5C_associated_SNPs_20585 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_21708 DeepMRMD:1;iRNA_m5C:0.999536712157816 21709 chr7 4002355 4002355 1 + G A COAD 4002345 + 4002325 4002365 41 CCATCTCCATCAGCAGGCTCCAGAATCCTCGATACAAAGTG CCATCTCCATCAGCAGGCTCCAGAATCCTCAATACAAAGTG < 41bp 1 0.220829466704185 1 0.420408248901367 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4002345 chr7:4002355 nonsynonymous SNV 0.582 4 31 hm5C_associated_SNPs_20586 0 0 1 0 1 cytosol 1 0.500231624313243 1 0.999536751373514 hm5C_site_21709 DeepMRMD:1;iRNA_m5C:0.999536751373514 21710 chr15 43816619 43816619 1 + G A COAD 43816600 + 43816580 43816620 41 TACATCCAGGAGAACCAGCCCTTGGAGAAGCAGAGGAGCGG TACATCCAGGAGAACCAGCCCTTGGAGAAGCAGAGGAGCAG < 41bp 1 0.189310447975171 1 0.683989763259888 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP1A ENSG00000166963 CDS Human protein_coding chr15:43816600 chr15:43816619 nonsynonymous SNV 0.940 2 40 hm5C_associated_SNPs_20588 0 0 0 0 0 nucleolus 1 0.500231643921092 0.632020473480224 0.999536712157815 hm5C_site_21710 DeepMRMD:0.632020473480224;iRNA_m5C:0.999536712157815 21711 chr12 46215250 46215250 1 + A T COAD 46215264 + 46215244 46215284 41 GAGAAGACTGATAGAGACTTCGTTAAGGTAAATCATTTTAA GAGAAGTCTGATAGAGACTTCGTTAAGGTAAATCATTTTAA < 41bp 1 0.0750800339388374 1 0.155941158533096 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID2 ENSG00000189079 CDS Human protein_coding chr12:46215264 chr12:46215250 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_20589 0 0 1 0 2 Nucleus 1 0.500231643949502 1 0.999536712100997 hm5C_site_21711 DeepMRMD:1;iRNA_m5C:0.999536712100997 21712 chr5 36985803 36985803 1 + C T COAD 36985791 + 36985771 36985811 41 CAGAGCGACATCGAGGGGATCAGTCTAGGGTTCGAAGACCA CAGAGCGACATCGAGGGGATCAGTCTAGGGTTTGAAGACCA < 41bp 1 0.141468890525943 1 0.0896184742450714 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:36985791 chr5:36985803 stopgain 1.000 0 33 hm5C_associated_SNPs_20590 1 0 1 0 0 Nucleus 1 0.500231710199002 1 0.999536579601996 hm5C_site_21712 DeepMRMD:1;iRNA_m5C:0.999536579601996 Cornelia de Lange syndrome 1 Cornelia de Lange syndrome 1 21713 chr11 65403915 65403915 1 + C A COAD 65403903 + 65403883 65403923 41 CACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGC CACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCATGAGTGGC < 41bp 1 0.160017210843158 1 0.355351865291595 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403903 chr11:65403915 nonsynonymous SNV 0.918 0 33 hm5C_associated_SNPs_20591 0 0 1 0 1 Ribosome 1 0.500231643930603 1 0.999536712138793 hm5C_site_21713 DeepMRMD:1;iRNA_m5C:0.999536712138793 21714 chr11 65403915 65403915 1 + C A COAD 65403904 + 65403884 65403924 41 ACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGCT ACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCATGAGTGGCT < 41bp 1 0.423165680264005 1 0.546309292316437 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403904 chr11:65403915 nonsynonymous SNV 0.918 0 32 hm5C_associated_SNPs_20592 0 0 1 0 1 Ribosome 1 0.500231643921092 0.907381415367126 0.999536712157815 hm5C_site_21714 DeepMRMD:0.907381415367126;iRNA_m5C:0.999536712157815 21715 chr15 73996759 73996759 1 + C T COAD 73996758 + 73996738 73996778 41 GCGAATGGCACCTACAGCTGCCTGGTGCGCAACCCCGTGCT GCGAATGGCACCTACAGCTGCTTGGTGCGCAACCCCGTGCT < 41bp 1 0.461191929005095 1 0.219303488731384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD276 ENSG00000103855 CDS Human protein_coding chr15:73996758 chr15:73996759 synonymous SNV . 0 22 hm5C_associated_SNPs_20593 0 0 1 0 1 Ribosome 1 0.500231643922237 1 0.999536712155527 hm5C_site_21715 DeepMRMD:1;iRNA_m5C:0.999536712155527 21716 chr1 150257012 150257012 1 + G A COAD 150257011 + 150256991 150257031 41 AACGTCATTTTCACAGGGAACGTTACCTAGGAACCTTGCTA AACGTCATTTTCACAGGGAACATTACCTAGGAACCTTGCTA < 41bp 1 0.101920664848111 1 0.0728173851966858 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIART ENSG00000159208 CDS Human protein_coding chr1:150257011 chr1:150257012 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_20595 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21716 DeepMRMD:1;iRNA_m5C:0.999536712157815 21717 chr16 3458654 3458654 1 + G A COAD 3458648 + 3458628 3458668 41 GCAACATCTTGGTCACCAGCCCACCCGCTCAGCAAAGAAAC GCAACATCTTGGTCACCAGCCCACCCACTCAGCAAAGAAAC < 41bp 1 0.0706501805949459 1 0.0935332179069519 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF174 ENSG00000103343 CDS Human protein_coding chr16:3458648 chr16:3458654 nonsynonymous SNV 0.501 0 27 hm5C_associated_SNPs_20596 0 0 0 0 0 Ribosome 1 0.500231643708549 1 0.999536712582903 hm5C_site_21717 DeepMRMD:1;iRNA_m5C:0.999536712582903 21718 chrX 153628249 153628249 1 + T C COAD 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAC < 41bp 1 0.387440225909348 1 0.0593574047088623 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628249 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_20597 0 0 1 0 1 Cytosol 1 0.500231643687332 1 0.999536712625337 hm5C_site_21718 DeepMRMD:1;iRNA_m5C:0.999536712625337 21719 chr5 179263603 179263603 1 + C T COAD 179263583 + 179263563 179263603 41 CCAGTATTCAAAGCATCCCCCGCCGTTGTGACCACTTTTGC CCAGTATTCAAAGCATCCCCCGCCGTTGTGACCACTTTTGT < 41bp 1 0.407560308526649 1 0.339669167995453 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SQSTM1 ENSG00000161011 CDS Human protein_coding chr5:179263583 chr5:179263603 synonymous SNV . 0 41 hm5C_associated_SNPs_20598 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21719 DeepMRMD:1;iRNA_m5C:0.999536712157815 21720 chr16 712760 712760 1 + C T COAD 712768 + 712748 712788 41 GGACATGGGCGTCGTGGGCACCACGGCGGGCACGCTGTGGT GGACATGGGCGTTGTGGGCACCACGGCGGGCACGCTGTGGT < 41bp 1 0.211178232945622 1 0.383971214294434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712768 chr16:712760 synonymous SNV . 0 13 hm5C_associated_SNPs_20599 0 0 1 0 3 Cytosol 1 0.500231393612124 1 0.999537212775752 hm5C_site_21720 DeepMRMD:1;iRNA_m5C:0.999537212775752 21721 chr7 94917903 94917903 1 + A G COAD 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCGGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA < 41bp 1 0.559156134698586 1 0.150697857141495 experiment 0.881687730602829 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917903 nonsynonymous SNV 0.130 0 7 hm5C_associated_SNPs_20600 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21721 DeepMRMD:1;iRNA_m5C:0.999536712157815 21722 chr7 819716 819716 1 + A G COAD 819711 + 819691 819731 41 TCCTACTATCAGAGCAGTGTCCAGTACCTGTACCGAGAGTT TCCTACTATCAGAGCAGTGTCCAGTGCCTGTACCGAGAGTT < 41bp 1 0.193226215698245 1 0.247268527746201 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:819711 chr7:819716 nonsynonymous SNV 0.359 1 26 hm5C_associated_SNPs_20601 0 0 1 0 1 Ribosome 1 0.500227912592019 1 0.999544174815961 hm5C_site_21722 DeepMRMD:1;iRNA_m5C:0.999544174815961 21723 chr16 66998553 66998553 1 + T C COAD 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGGCTGCTCCACAGAGCCATCACACAGAGTGGGGTCAT < 41bp 1 0.449470602114277 1 0.268282532691956 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998553 nonsynonymous SNV 0.848 3 10 hm5C_associated_SNPs_20602 0 0 1 0 2 nucleolus 1 0.500231651998906 1 0.999536696002189 hm5C_site_21723 DeepMRMD:1;iRNA_m5C:0.999536696002189 21724 chr2 74328807 74328807 1 + C T COAD 74328796 + 74328776 74328816 41 GCGGTGAAGGAGGAGAAGGGCGGTGGTGGTGCGGAGGAGGA GCGGTGAAGGAGGAGAAGGGCGGTGGTGGTGTGGAGGAGGA < 41bp 1 0.531627717911882 1 0.41674929857254 experiment 0.936744564176237 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74328796 chr2:74328807 nonsynonymous SNV 0.000 0 32 hm5C_associated_SNPs_20603 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21724 DeepMRMD:1;iRNA_m5C:0.999536712157815 21725 chr12 94563012 94563012 1 + C A COAD 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGCACAGTGGTAAT < 41bp 1 0.0543131290638909 1 0.0652722418308258 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563012 synonymous SNV . 0 33 hm5C_associated_SNPs_20604 0 0 1 0 2 chromatin 1 0.500231477591044 1 0.999537044817913 hm5C_site_21725 DeepMRMD:1;iRNA_m5C:0.999537044817913 21726 chr6 30610597 30610597 1 + C T COAD 30610600 + 30610580 30610620 41 AACAGGGCCCCTCGCCGCGCCACACCTCCAGCCCACCCACC AACAGGGCCCCTCGCCGTGCCACACCTCCAGCCCACCCACC < 41bp 1 0.358394815759453 1 0.285632908344269 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATAT1 ENSG00000137343 CDS Human protein_coding chr6:30610600 chr6:30610597 synonymous SNV . 0 18 hm5C_associated_SNPs_20605 0 0 0 0 1 chromatin 1 0.500231641844687 1 0.999536716310625 hm5C_site_21726 DeepMRMD:1;iRNA_m5C:0.999536716310625 21727 chr13 114175031 114175031 1 + C T COAD 114175039 + 114175019 114175059 41 CATACAGGCGGGCGCCAGTGCATCTTCTAGGTAAACGCTTT CATACAGGCGGGTGCCAGTGCATCTTCTAGGTAAACGCTTT < 41bp 1 0.211856118400238 1 0.260081648826599 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114175039 chr13:114175031 synonymous SNV . 0 13 hm5C_associated_SNPs_20606 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_21727 DeepMRMD:1;iRNA_m5C:0.999536712157813 21728 chr12 95897881 95897881 1 + C T COAD 95897862 + 95897842 95897882 41 GTGCTGGAATTGATGTTCGTCTGTGTGATGTTGGTGAGGCC GTGCTGGAATTGATGTTCGTCTGTGTGATGTTGGTGAGGTC < 41bp 1 0.465782554050298 1 0.52300900220871 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95897862 chr12:95897881 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_20608 0 0 1 0 1 Ribosome 1 0.500234819827238 0.95398199558258 0.999530360345525 hm5C_site_21728 DeepMRMD:0.95398199558258;iRNA_m5C:0.999530360345525 21729 chr12 95897881 95897881 1 + C T COAD 95897882 + 95897862 95897902 41 CTGTGTGATGTTGGTGAGGCCATCCAAGAAGTTATGGAGTC CTGTGTGATGTTGGTGAGGTCATCCAAGAAGTTATGGAGTC < 41bp 1 0.258528124967239 1 0.154890418052673 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95897882 chr12:95897881 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_20609 0 0 1 0 1 Ribosome 1 0.500231643667472 1 0.999536712665055 hm5C_site_21729 DeepMRMD:1;iRNA_m5C:0.999536712665055 21730 chr1 40704987 40704987 1 + A T COAD 40704975 + 40704955 40704995 41 AATAAGTTTTAAAACCAGAGCTGAGGCCCTCCATATGTGTG AATAAGTTTTAAAACCAGAGCTGAGGCCCTCCTTATGTGTG < 41bp 1 0.320215684008317 1 0.283372193574905 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RLF ENSG00000117000 CDS Human protein_coding chr1:40704975 chr1:40704987 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_20610 0 0 1 0 0 Nucleus 1 0.500231632978449 1 0.999536734043103 hm5C_site_21730 DeepMRMD:1;iRNA_m5C:0.999536734043103 21731 chr1 63282307 63282307 1 + A T COAD 63282293 + 63282273 63282313 41 CGGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA CGGGATGTACAATAGAGGATCACGTAATTGCAGGTAATGTA < 41bp 1 0.489382418131068 1 0.151971101760864 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4C ENSG00000125703 CDS Human protein_coding chr1:63282293 chr1:63282307 synonymous SNV . 0 35 hm5C_associated_SNPs_20611 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21731 DeepMRMD:1;iRNA_m5C:0.999536712157815 21732 chr10 102684006 102684006 1 + C T COAD 102684010 + 102683990 102684030 41 ATTCTGGCAATTCTGGCCACCATTCTACCAGGAATAGTGAC ATTCTGGCAATTCTGGTCACCATTCTACCAGGAATAGTGAC < 41bp 1 0.0390477919423828 1 0.151959955692291 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102684010 chr10:102684006 synonymous SNV . 0 17 hm5C_associated_SNPs_20612 0 0 1 0 0 Nucleus 1 0.500231585926894 1 0.999536828146213 hm5C_site_21732 DeepMRMD:1;iRNA_m5C:0.999536828146213 21733 chr5 140481787 140481787 1 + G A COAD 140481767 + 140481747 140481787 41 CCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCG CCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCA < 41bp 1 0.649455216130082 1 0.153864800930023 experiment 0.701089567739835 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140481767 chr5:140481787 synonymous SNV . 0 41 hm5C_associated_SNPs_20613 0 0 0 0 0 exosome 1 0.500231642349988 1 0.999536715300025 hm5C_site_21733 DeepMRMD:1;iRNA_m5C:0.999536715300025 21734 chr9 135117321 135117321 1 + C T COAD 135117309 + 135117289 135117329 41 CTGTGCCAGAACGGAGGCACCTGCCTGCAGAACCAGCGCTG CTGTGCCAGAACGGAGGCACCTGCCTGCAGAATCAGCGCTG < 41bp 1 0.610710730209363 1 0.253417491912842 experiment 0.778578539581275 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135117309 chr9:135117321 synonymous SNV . 0 33 hm5C_associated_SNPs_20614 0 0 0 0 1 exosome 1 0.500235149210712 1 0.999529701578576 hm5C_site_21734 DeepMRMD:1;iRNA_m5C:0.999529701578576 21735 chr17 17041254 17041254 1 + G A COAD 17041237 + 17041217 17041257 41 CTGTCTCTTCCAGAGGAGAGCGCCATGAGTAGCGACCGCAT CTGTCTCTTCCAGAGGAGAGCGCCATGAGTAGCGACCACAT < 41bp 1 0.533823962729351 1 0.696266770362854 experiment 0.932352074541299 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17041237 chr17:17041254 nonsynonymous SNV 0.901 1 38 hm5C_associated_SNPs_20615 0 0 1 0 1 Cytosol 1 0.500231643924569 0.607466459274292 0.999536712150862 hm5C_site_21735 DeepMRMD:0.607466459274292;iRNA_m5C:0.999536712150862 21736 chr20 30381750 30381750 1 + C A COAD 30381751 + 30381731 30381771 41 AAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGAG AAGAACTGTGGAAATATGCACTTTCTCGTTTGATTCTCGAG < 41bp 1 0.0306226452726664 1 0.0496317446231842 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381751 chr20:30381750 nonsynonymous SNV 0.878 3 20 hm5C_associated_SNPs_20616 0 0 1 0 2 Cytosol 1 0.500231643948703 1 0.999536712102595 hm5C_site_21736 DeepMRMD:1;iRNA_m5C:0.999536712102595 21737 chr4 123260555 123260555 1 + G A COAD 123260543 + 123260523 123260563 41 GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAG GAGTGGAACAAAGACTTCTGCTAGCAAAACTGAAATACCAG < 41bp 1 0.115952347600657 1 0.410685420036316 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123260543 chr4:123260555 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_20617 0 0 1 0 1 Nucleus 1 0.500231641107396 1 0.999536717785208 hm5C_site_21737 DeepMRMD:1;iRNA_m5C:0.999536717785208 21738 chr5 52177801 52177801 1 + G A COAD 52177818 + 52177798 52177838 41 ATAGTCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGG ATAATCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGG < 41bp 1 0.342201785072218 1 0.388006120920181 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52177818 chr5:52177801 nonsynonymous SNV 0.973 1 4 hm5C_associated_SNPs_20618 0 0 0 2 2 chromatin 1 0.500211402748826 1 0.999577194502348 hm5C_site_21738 DeepMRMD:1;iRNA_m5C:0.999577194502348 21739 chr17 42085969 42085969 1 + A G COAD 42085966 + 42085946 42085986 41 CCAGCTTCTGACCCAGGCAGCTGACCCTCACCATGGACACT CCAGCTTCTGACCCAGGCAGCTGGCCCTCACCATGGACACT < 41bp 1 0.22809761033475 1 0.393026947975159 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAGS ENSG00000161653 CDS Human protein_coding chr17:42085966 chr17:42085969 stoploss 0.954 0 24 hm5C_associated_SNPs_20619 0 0 0 0 0 Cytosol 1 0.500231643624867 1 0.999536712750266 hm5C_site_21739 DeepMRMD:1;iRNA_m5C:0.999536712750266 21740 chr12 121858089 121858089 1 + C T COAD 121858092 + 121858072 121858112 41 ACAGAAGATGATGATGACGACGATGATGAGGATGATGATGA ACAGAAGATGATGATGATGACGATGATGAGGATGATGATGA < 41bp 1 0.452975450740462 1 0.224586695432663 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858092 chr12:121858089 synonymous SNV . 0 18 hm5C_associated_SNPs_20620 0 0 1 0 2 chromatin 1 0.500233677219698 1 0.999532645560604 hm5C_site_21740 DeepMRMD:1;iRNA_m5C:0.999532645560604 21741 chr19 45495560 45495560 1 + G A COAD 45495555 + 45495535 45495575 41 AAGTCTGTGGCCCACCTTCCCTGGCGCATGCTCACCTACAA AAGTCTGTGGCCCACCTTCCCTGGCACATGCTCACCTACAA < 41bp 1 0.691360883169444 1 0.629426419734955 experiment 0.617278233661112 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45495555 chr19:45495560 nonsynonymous SNV 0.991 4 26 hm5C_associated_SNPs_20621 0 0 1 0 1 Cytosol 1 0.500231643921092 0.74114716053009 0.999536712157815 hm5C_site_21741 DeepMRMD:0.74114716053009;iRNA_m5C:0.999536712157815 21742 chr19 47423193 47423193 1 + G T COAD 47423199 + 47423179 47423219 41 ACGAGGCCCACTTAGAGAAGCTGAGGAACGAAAGGAAAAGA ACGAGGCCCACTTATAGAAGCTGAGGAACGAAAGGAAAAGA < 41bp 1 0.329726425599287 1 0.337332457304001 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47423199 chr19:47423193 stopgain 1.000 1 15 hm5C_associated_SNPs_20623 0 0 1 0 0 Ribosome 1 0.500231644018348 1 0.999536711963304 hm5C_site_21742 DeepMRMD:1;iRNA_m5C:0.999536711963304 21743 chr19 47423193 47423193 1 + G T COAD 47423207 + 47423187 47423227 41 CACTTAGAGAAGCTGAGGAACGAAAGGAAAAGAGTTGAGAT CACTTATAGAAGCTGAGGAACGAAAGGAAAAGAGTTGAGAT < 41bp 1 0.50063489640472 1 0.436169803142548 experiment 0.998730207190559 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47423207 chr19:47423193 stopgain 1.000 1 7 hm5C_associated_SNPs_20624 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_21743 DeepMRMD:1;iRNA_m5C:0.999536712157815 21744 chr6 29797279 29797279 1 + C T COAD 29797286 + 29797266 29797306 41 GGCTTCTACCCTGCGGAGATCATACTGACCTGGCAGCGGGA GGCTTCTACCCTGTGGAGATCATACTGACCTGGCAGCGGGA < 41bp 1 0.151394449683581 1 0.135508835315704 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HLA-G ENSG00000204632 CDS Human protein_coding chr6:29797286 chr6:29797279 nonsynonymous SNV 0.488 1 14 hm5C_associated_SNPs_20625 0 0 0 0 1 exosome 1 0.500231643956461 1 0.999536712087079 hm5C_site_21744 DeepMRMD:1;iRNA_m5C:0.999536712087079 21745 chr19 42848895 42848895 1 + G A COAD 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCGTCACATCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.247186438634617 1 0.118346184492111 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848895 synonymous SNV . 0 9 hm5C_associated_SNPs_20626 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644056705 1 0.999536711886591 hm5C_site_21745 DeepMRMD:1;iRNA_m5C:0.999536711886591 21746 chr20 37161487 37161487 1 + C G COAD 37161476 + 37161456 37161496 41 GACTCCCGATAGTGAGAGACCTGCTCAAGCTCTCTTAAGAG GACTCCCGATAGTGAGAGACCTGCTCAAGCTGTCTTAAGAG < 41bp 1 0.305805371648698 1 0.539831936359406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37161476 chr20:37161487 nonsynonymous SNV 0.998 3 32 hm5C_associated_SNPs_20627 0 0 1 0 1 Nucleus 1 0.500372214337334 0.920336127281188 0.999255571325332 hm5C_site_21746 DeepMRMD:0.920336127281188;iRNA_m5C:0.999255571325332 21747 chr8 98699740 98699740 1 + G C COAD 98699751 + 98699731 98699771 41 GGTTCATTGGATTCAACTATCCCTGGGATAGAAAATACCAT GGTTCATTGCATTCAACTATCCCTGGGATAGAAAATACCAT < 41bp 1 0.209494057161512 1 0.0763855576515198 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98699751 chr8:98699740 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_20628 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21747 DeepMRMD:1;iRNA_m5C:0.999536712157815 21748 chr11 68204451 68204451 1 + C T COAD 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACGGCTCTGACGAGCTCATGTGTGGTG < 41bp 1 0.308921000958796 1 0.122800171375275 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204451 synonymous SNV . 0 22 hm5C_associated_SNPs_20629 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921089 1 0.999536712157823 hm5C_site_21748 DeepMRMD:1;iRNA_m5C:0.999536712157823 21749 chr5 137680836 137680836 1 + G T COAD 137680844 + 137680824 137680864 41 CAGTGGTGGAGGGGGTGGGCCGCAGGTGCCTCACCAGAGCC CAGTGGTGGAGGTGGTGGGCCGCAGGTGCCTCACCAGAGCC < 41bp 1 0.66174272009628 1 0.514776706695557 experiment 0.67651455980744 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680844 chr5:137680836 synonymous SNV . 0 13 hm5C_associated_SNPs_20631 0 0 1 0 0 chromatin 1 0.500231643921092 0.970446586608886 0.999536712157815 hm5C_site_21749 DeepMRMD:0.970446586608886;iRNA_m5C:0.999536712157815 21750 chr20 3802796 3802796 1 + G T COAD 3802800 + 3802780 3802820 41 CTCATTCACACCTTGAGGGCCCCGAATACTGAGGACACGGG CTCATTCACACCTTGATGGCCCCGAATACTGAGGACACGGG < 41bp 1 0.472182722324264 1 0.0345503091812134 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3802800 chr20:3802796 nonsynonymous SNV 0.637 1 17 hm5C_associated_SNPs_20632 0 0 1 0 1 Ribosome 1 0.500231643923279 1 0.999536712153443 hm5C_site_21750 DeepMRMD:1;iRNA_m5C:0.999536712153443 21751 chr9 131247124 131247124 1 + G A COAD 131247109 + 131247089 131247129 41 CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAG CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCAAGGAG < 41bp 1 0.414530617949719 1 0.458017706871033 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247109 chr9:131247124 nonsynonymous SNV 0.953 4 36 hm5C_associated_SNPs_20633 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21751 DeepMRMD:1;iRNA_m5C:0.999536712157815 21752 chr16 12450129 12450129 1 + G A COAD 12450135 + 12450115 12450155 41 GCTCATCGATCTCCGGGGACCGGTGAGTGTTTCCCCAACCC GCTCATCGATCTCCAGGGACCGGTGAGTGTTTCCCCAACCC < 41bp 1 0.378749185193781 1 0.469673842191696 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12450135 chr16:12450129 nonsynonymous SNV 0.870 2 15 hm5C_associated_SNPs_20634 0 0 1 0 1 Nucleus 1 0.500231114074548 1 0.999537771850904 hm5C_site_21752 DeepMRMD:1;iRNA_m5C:0.999537771850904 21753 chr6 52269005 52269005 1 + G A COAD 52269024 + 52269004 52269044 41 TGCCTGCAGTGCTGCCACCGCAGCCCTTCTGAGGCACAAAG TACCTGCAGTGCTGCCACCGCAGCCCTTCTGAGGCACAAAG < 41bp 1 0.286196333740398 1 0.626247584819794 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAQR8 ENSG00000170915 CDS Human protein_coding chr6:52269024 chr6:52269005 nonsynonymous SNV 0.098 0 2 hm5C_associated_SNPs_20635 0 0 1 0 0 Ribosome 1 0.500231643921093 0.747504830360412 0.999536712157815 hm5C_site_21753 DeepMRMD:0.747504830360412;iRNA_m5C:0.999536712157815 21754 chr5 6652014 6652014 1 + C T COAD 6652008 + 6651988 6652028 41 AAAGCCTATGCCACTGTTGGCGTGTACAATGGCGATTATGT AAAGCCTATGCCACTGTTGGCGTGTATAATGGCGATTATGT < 41bp 1 0.170654673967252 1 0.2676802277565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6652008 chr5:6652014 nonsynonymous SNV 0.000 0 27 hm5C_associated_SNPs_20636 0 0 0 0 1 Ribosome 1 0.500231643920835 1 0.99953671215833 hm5C_site_21754 DeepMRMD:1;iRNA_m5C:0.99953671215833 21755 chr11 4091345 4091345 1 + C A COAD 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTGCCTATATCCAGAACAGTTACTCCAAGGA < 41bp 1 0.666280368419584 1 0.710178852081299 experiment 0.667439263160832 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091345 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_20637 0 0 1 0 2 Endoplasmic reticulum 1 0.500231634227864 0.579642295837402 0.999536731544273 hm5C_site_21755 DeepMRMD:0.579642295837402;iRNA_m5C:0.999536731544273 21756 chr10 43289389 43289389 1 + G A COAD 43289408 + 43289388 43289428 41 CGCTGTTTTCTGATTCCAAGCCACTTGGGTCAGAGGATATA CACTGTTTTCTGATTCCAAGCCACTTGGGTCAGAGGATATA < 41bp 1 0.103371550777373 1 0.0493552684783936 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43289408 chr10:43289389 synonymous SNV . 0 2 hm5C_associated_SNPs_20638 0 0 1 0 1 chromatin 1 0.500231643956415 1 0.99953671208717 hm5C_site_21756 DeepMRMD:1;iRNA_m5C:0.99953671208717 21757 chr10 43285945 43285945 1 + A G COAD 43285946 + 43285926 43285966 41 ATTAAAACACAGGTTCTGGACGGAAGTTTACCCGGTACGAA ATTAAAACACAGGTTCTGGGCGGAAGTTTACCCGGTACGAA < 41bp 1 0.67620881984564 1 0.456951797008514 experiment 0.647582360308721 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43285946 chr10:43285945 nonsynonymous SNV 0.978 2 20 hm5C_associated_SNPs_20639 0 0 1 0 1 chromatin 1 0.500231643921592 1 0.999536712156817 hm5C_site_21757 DeepMRMD:1;iRNA_m5C:0.999536712156817 21758 chr2 11053253 11053253 1 + C T COAD 11053264 + 11053244 11053284 41 GCTGGTTCACCCTGGAGTACCTGCTGCGCCTCTTCTCGTCA GCTGGTTCATCCTGGAGTACCTGCTGCGCCTCTTCTCGTCA < 41bp 1 0.579925874603543 1 0.103346526622772 experiment 0.840148250792915 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11053264 chr2:11053253 nonsynonymous SNV 0.998 5 10 hm5C_associated_SNPs_20640 0 0 0 0 0 exosome 1 0.500231218451321 1 0.999537563097358 hm5C_site_21758 DeepMRMD:1;iRNA_m5C:0.999537563097358 21759 chr17 40936555 40936555 1 + C T COAD 40936572 + 40936552 40936592 41 CTCCGAGTGCCAGAATGCCGCGCAAATCTACCGCAAGGTCA CTCTGAGTGCCAGAATGCCGCGCAAATCTACCGCAAGGTCA < 41bp 1 0.617160296653893 1 0.246440708637238 experiment 0.765679406692215 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936572 chr17:40936555 synonymous SNV . 0 4 hm5C_associated_SNPs_20641 0 0 1 0 1 chromatin 1 0.500231713267703 1 0.999536573464593 hm5C_site_21759 DeepMRMD:1;iRNA_m5C:0.999536573464593 21760 chr19 35504557 35504557 1 + C T COAD 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACGTCCAACCTTTCCCGAGCCAGCAGCGA < 41bp 1 0.0226448082254931 1 0.0727641582489014 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504557 nonsynonymous SNV 0.552 3 16 hm5C_associated_SNPs_20643 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920521 1 0.999536712158958 hm5C_site_21760 DeepMRMD:1;iRNA_m5C:0.999536712158958 21761 chr16 67578985 67578985 1 + G A COAD 67578992 + 67578972 67579012 41 CAGTATGGTGCCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC CAGTATGGTGCCCACCTCTCCCTGCGCCAGCCAGGCTTGGC < 41bp 1 0.0835954505176507 1 0.0959350764751434 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578992 chr16:67578985 nonsynonymous SNV 0.994 2 14 hm5C_associated_SNPs_20646 0 0 1 0 1 unknown 1 0.500231622854309 1 0.999536754291382 hm5C_site_21761 DeepMRMD:1;iRNA_m5C:0.999536754291382 21762 chr12 57552324 57552324 1 + C T COAD 57552333 + 57552313 57552353 41 CTGGACTTCCACGCTGAGACCGGCTTCATCTACTTTGCCGA CTGGACTTCCATGCTGAGACCGGCTTCATCTACTTTGCCGA < 41bp 1 0.107909987626193 1 0.336542129516602 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57552333 chr12:57552324 synonymous SNV . 0 12 hm5C_associated_SNPs_20647 0 0 0 0 1 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21762 DeepMRMD:1;iRNA_m5C:0.999536712157815 21763 chr16 66919002 66919002 1 + C T COAD 66918990 + 66918970 66919010 41 GGTTGCTTTCTCTGGGGCAACAGCTTGCATGGCCCATGTTG GGTTGCTTTCTCTGGGGCAACAGCTTGCATGGTCCATGTTG < 41bp 1 0.554770636363435 1 0.227168619632721 experiment 0.890458727273129 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDP2 ENSG00000172840 CDS Human protein_coding chr16:66918990 chr16:66919002 nonsynonymous SNV 0.997 2 33 hm5C_associated_SNPs_20648 0 0 1 0 0 nucleolus 1 0.500231752461212 1 0.999536495077576 hm5C_site_21763 DeepMRMD:1;iRNA_m5C:0.999536495077576 21764 chr1 162745477 162745477 1 + G A COAD 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTCTTAAGGAGATAAAGATCATGTCTCAGCTCAAGGACCC < 41bp 1 0.272199060982949 1 0.0844174325466156 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745477 nonsynonymous SNV 0.987 5 29 hm5C_associated_SNPs_20649 0 0 0 0 1 nucleolus 1 0.500231643863309 1 0.999536712273381 hm5C_site_21764 DeepMRMD:1;iRNA_m5C:0.999536712273381 21765 chr4 110581398 110581398 1 + T C COAD 110581382 + 110581362 110581402 41 ATTTATAGACATGGCCTTCCCTTGGTAACACTTACCTTGCC ATTTATAGACATGGCCTTCCCTTGGTAACACTTACCCTGCC < 41bp 1 0.67912379193408 1 0.709373593330383 experiment 0.64175241613184 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCUB ENSG00000005059 CDS Human protein_coding chr4:110581382 chr4:110581398 synonymous SNV . 0 37 hm5C_associated_SNPs_20650 0 0 1 0 1 unknown 1 0.500231643921092 0.581252813339234 0.999536712157815 hm5C_site_21765 DeepMRMD:0.581252813339234;iRNA_m5C:0.999536712157815 21766 chr5 36985777 36985777 1 + G T COAD 36985791 + 36985771 36985811 41 CAGAGCGACATCGAGGGGATCAGTCTAGGGTTCGAAGACCA CAGAGCTACATCGAGGGGATCAGTCTAGGGTTCGAAGACCA < 41bp 1 0.119221103605033 1 0.0571417212486267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:36985791 chr5:36985777 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_20651 0 0 1 0 0 Nucleus 1 0.500231643919312 1 0.999536712161377 hm5C_site_21766 DeepMRMD:1;iRNA_m5C:0.999536712161377 21767 chr20 60348199 60348199 1 + C T COAD 60348215 + 60348195 60348235 41 TGCCCGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTG TGCCTGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTG < 41bp 1 0.0455417294743215 1 0.0237818956375122 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348215 chr20:60348199 synonymous SNV . 0 5 hm5C_associated_SNPs_20652 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_21767 DeepMRMD:1;iRNA_m5C:0.999536712157813 21768 chr20 60348199 60348199 1 + C T COAD 60348217 + 60348197 60348237 41 CCCGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTGAG CCTGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTGAG < 41bp 1 0.183788328636562 1 0.0324871242046356 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348217 chr20:60348199 synonymous SNV . 0 3 hm5C_associated_SNPs_20653 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_21768 DeepMRMD:1;iRNA_m5C:0.999536712157815 21769 chr9 96411465 96411465 1 + C T COAD 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GCACCAACCGCAAGCGGGTCCTCAATGTCACCAACCTCGAG < 41bp 1 0.577233316739802 1 0.632687211036682 experiment 0.845533366520395 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411465 synonymous SNV . 0 26 hm5C_associated_SNPs_20655 0 0 1 0 1 chromatin 1 0.500231642697896 0.734625577926636 0.999536714604208 hm5C_site_21769 DeepMRMD:0.734625577926636;iRNA_m5C:0.999536714604208 21770 chr18 641425 641425 1 + C T COAD 641423 + 641403 641443 41 TGGCCAGATTCTCCAGATGACCCGGAAGCACTTGGAGGACA TGGCCAGATTCTCCAGATGACCTGGAAGCACTTGGAGGACA < 41bp 1 0.387359210423341 1 0.0546078979969025 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641423 chr18:641425 nonsynonymous SNV 0.682 3 23 hm5C_associated_SNPs_20656 0 0 0 0 1 cytosol 1 0.500231643950544 1 0.999536712098911 hm5C_site_21770 DeepMRMD:1;iRNA_m5C:0.999536712098911 21771 chr2 220496746 220496746 1 + C A COAD 220496744 + 220496724 220496764 41 ACACTTAGTGAAAAAGCCCTCCCGGACGCAGGGCGGGAGGG ACACTTAGTGAAAAAGCCCTCCAGGACGCAGGGCGGGAGGG < 41bp 1 0.337865911606453 1 0.673878252506256 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220496744 chr2:220496746 synonymous SNV . 0 23 hm5C_associated_SNPs_20657 0 0 0 0 0 Cytosol 1 0.500231643921092 0.652243494987488 0.999536712157815 hm5C_site_21771 DeepMRMD:0.652243494987488;iRNA_m5C:0.999536712157815 21772 chrX 107909786 107909786 1 + A T COAD 107909782 + 107909762 107909802 41 GCGAAAAAGGCAAACCCGGTCAAGATGGTATTCCTGGACCA GCGAAAAAGGCAAACCCGGTCAAGTTGGTATTCCTGGACCA < 41bp 1 0.461584217354181 1 0.45640230178833 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107909782 chrX:107909786 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_20658 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_21772 DeepMRMD:1;iRNA_m5C:0.999536712157815 21773 chr12 54675966 54675966 1 + T G COAD 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAGAGATTAGTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.6187379450155 1 0.362755805253983 experiment 0.762524109968999 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675966 stopgain 1.000 1 14 hm5C_associated_SNPs_20659 0 0 0 3 1 Cytosol 1 0.500229574000942 1 0.999540851998116 hm5C_site_21773 DeepMRMD:1;iRNA_m5C:0.999540851998116 21774 chr19 10789839 10789839 1 + G A COAD 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCGCATGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0843414990971623 1 0.0509595274925232 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789839 nonsynonymous SNV 0.863 4 6 hm5C_associated_SNPs_20660 0 0 1 0 2 Cytosol 1 0.500221884663939 1 0.999556230672121 hm5C_site_21774 DeepMRMD:1;iRNA_m5C:0.999556230672121 21775 chr19 10789839 10789839 1 + G A COAD 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCGCATGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC < 41bp 1 0.0350541083248323 1 0.104661911725998 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789839 nonsynonymous SNV 0.863 4 5 hm5C_associated_SNPs_20661 0 0 1 0 2 Cytosol 1 0.500231643921106 1 0.999536712157788 hm5C_site_21775 DeepMRMD:1;iRNA_m5C:0.999536712157788 21776 chr16 2286845 2286845 1 + G A COAD 2286855 + 2286835 2286875 41 TCTGCTGGCCGCACTCTGGGCGCTGGAAGCCGCCGGGACCG TCTGCTGGCCACACTCTGGGCGCTGGAAGCCGCCGGGACCG < 41bp 1 0.621562157626847 1 0.379062086343765 experiment 0.756875684746307 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1L2 ENSG00000167968 CDS Human protein_coding chr16:2286855 chr16:2286845 nonsynonymous SNV 0.001 0 11 hm5C_associated_SNPs_20662 0 0 0 0 2 exosome 1 0.500231665871078 1 0.999536668257844 hm5C_site_21776 DeepMRMD:1;iRNA_m5C:0.999536668257844 21777 chr5 148808540 148808540 1 + C A COAD 148808551 + 148808531 148808571 41 GTTGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAAGAGAG GTTGGGAGTATGAGATGAAGCACTGTAGCTCAGGAAGAGAG < 41bp 1 0.507909577009986 1 0.171170264482498 experiment 0.984180845980029 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808551 chr5:148808540 . . 0 10 hm5C_associated_SNPs_20663 0 0 1 0 2 unknown 1 0.500231643921034 1 0.999536712157933 hm5C_site_21777 DeepMRMD:1;iRNA_m5C:0.999536712157933 21778 chr5 148808540 148808540 1 + C A COAD 148808553 + 148808533 148808573 41 TGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAAGAGAGAA TGGGAGTATGAGATGAAGCACTGTAGCTCAGGAAGAGAGAA < 41bp 1 0.413306288133534 1 0.0541495978832245 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808553 chr5:148808540 . . 0 8 hm5C_associated_SNPs_20664 0 0 1 0 2 unknown 1 0.500231644015923 1 0.999536711968155 hm5C_site_21778 DeepMRMD:1;iRNA_m5C:0.999536711968155 21779 chr5 148808540 148808540 1 + C A COAD 148808559 + 148808539 148808579 41 TCTGAGATGAAGCACTGTAGCTCAGGAAGAGAGAAGTTGTT TATGAGATGAAGCACTGTAGCTCAGGAAGAGAGAAGTTGTT < 41bp 1 0.576720572050364 1 0.0562585890293121 experiment 0.846558855899272 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CARMN;MIR143 ENSG00000208035 ncRNA_exonic Human other chr5:148808559 chr5:148808540 . . 0 2 hm5C_associated_SNPs_20665 0 0 1 0 2 unknown 1 0.500230837980943 1 0.999538324038114 hm5C_site_21779 DeepMRMD:1;iRNA_m5C:0.999538324038114 21780 chr11 86947708 86947708 1 + T C COAD 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTGCATCACAGCTGCCACGTACATGTTCTTTTTCAG < 41bp 1 0.148173443405363 1 0.0432851314544678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947708 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_20666 0 0 1 0 2 Ribosome 1 0.500265556745248 1 0.999468886509504 hm5C_site_21780 DeepMRMD:1;iRNA_m5C:0.999468886509504 21781 chr3 31658470 31658470 1 + C G COAD 31658471 + 31658451 31658491 41 TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGAGTTC TCTTGCAGTATCTGAGAGAGCGATTAACAAAACAAGAGTTC < 41bp 1 0.283059465267731 1 0.238721609115601 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31658471 chr3:31658470 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_20667 0 0 1 0 2 Nucleus 1 0.500232030694654 1 0.999535938610692 hm5C_site_21781 DeepMRMD:1;iRNA_m5C:0.999535938610692 21782 chr1 213414700 213414700 1 + A G COAD 213414710 + 213414690 213414730 41 TAAAATCAGAACCTTTGAAACCATTCTTTACTCTTCCAGAT TAAAATCAGAGCCTTTGAAACCATTCTTTACTCTTCCAGAT < 41bp 1 0.0558461962368623 1 0.094005823135376 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213414710 chr1:213414700 synonymous SNV . 0 11 hm5C_associated_SNPs_20668 0 0 1 0 0 Nucleus 1 0.500231640175387 1 0.999536719649227 hm5C_site_21782 DeepMRMD:1;iRNA_m5C:0.999536719649227 21783 chr17 79409160 79409160 1 + G A COAD 79409170 + 79409150 79409190 41 GACGGGCACTGCAGGGAGGGCGGCCCCGCACCCCGAGGGGC GACGGGCACTACAGGGAGGGCGGCCCCGCACCCCGAGGGGC < 41bp 1 0.240246998989908 1 0.408212184906006 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79409170 chr17:79409160 nonsynonymous SNV 0.194 1 11 hm5C_associated_SNPs_20669 0 0 0 0 0 chromatin 1 0.500231643921395 1 0.999536712157211 hm5C_site_21783 DeepMRMD:1;iRNA_m5C:0.999536712157211 21784 chr1 24998032 24998032 1 + T C COAD 24998049 + 24998029 24998069 41 AGCTGCCACAACCACATTAGCACAGGAAGAGCCAGTGGCAG AGCCGCCACAACCACATTAGCACAGGAAGAGCCAGTGGCAG < 41bp 1 0.692315236336677 1 0.133470982313156 experiment 0.615369527326646 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24998049 chr1:24998032 synonymous SNV . 0 4 hm5C_associated_SNPs_20670 0 0 0 0 0 Cytosol 1 0.500231822294892 1 0.999536355410215 hm5C_site_21784 DeepMRMD:1;iRNA_m5C:0.999536355410215 21785 chrX 21874804 21874804 1 + A G COAD 21874808 + 21874788 21874828 41 GCAGCCGCTCTTCACGAACACGGGCTATGGCGACCACGACC GCAGCCGCTCTTCACGGACACGGGCTATGGCGACCACGACC < 41bp 1 0.626619383908335 1 0.746547877788544 experiment 0.74676123218333 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YY2 ENSG00000230797 CDS Human protein_coding chrX:21874808 chrX:21874804 nonsynonymous SNV 0.000 0 17 hm5C_associated_SNPs_20671 0 0 0 0 0 exosome 1 0.500231643920968 0.506904244422912 0.999536712158063 hm5C_site_21785 DeepMRMD:0.506904244422912;iRNA_m5C:0.999536712158063 21786 chr12 57588466 57588466 1 + G T COAD 57588474 + 57588454 57588494 41 TGAACATGGCGAGGACGAGACCCACTGCAGTGAGTGACCAC TGAACATGGCGATGACGAGACCCACTGCAGTGAGTGACCAC < 41bp 1 0.0306553093828467 1 0.0389719903469086 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57588474 chr12:57588466 nonsynonymous SNV 0.997 1 13 hm5C_associated_SNPs_20672 0 0 1 0 1 Exosome 1 0.500260835804721 1 0.999478328390558 hm5C_site_21786 DeepMRMD:1;iRNA_m5C:0.999478328390558 21787 chr17 48153045 48153045 1 + C T COAD 48153033 + 48153013 48153053 41 CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCATGGCTTCTT < 41bp 1 0.334515405757669 1 0.259822189807892 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153033 chr17:48153045 synonymous SNV . 0 33 hm5C_associated_SNPs_20673 0 0 0 0 2 Cytosol 1 0.500231139534809 1 0.999537720930383 hm5C_site_21787 DeepMRMD:1;iRNA_m5C:0.999537720930383 21788 chr8 28608183 28608183 1 + C T COAD 28608178 + 28608158 28608198 41 TCTCTCCCGTTTCCAGGTGACCTCACGGTGGACATTCCGAT TCTCTCCCGTTTCCAGGTGACCTCATGGTGGACATTCCGAT < 41bp 1 0.109640470177221 1 0.03302001953125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28608178 chr8:28608183 nonsynonymous SNV 0.310 4 26 hm5C_associated_SNPs_20674 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644146183 1 0.999536711707634 hm5C_site_21788 DeepMRMD:1;iRNA_m5C:0.999536711707634 21789 chr17 77755566 77755566 1 + C T COAD 77755547 + 77755527 77755567 41 GAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGCC GAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGTC < 41bp 1 0.462391380393632 1 0.382382929325104 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755547 chr17:77755566 nonsynonymous SNV 0.003 0 40 hm5C_associated_SNPs_20675 0 0 1 0 2 chromatin 1 0.500231643922686 1 0.999536712154628 hm5C_site_21789 DeepMRMD:1;iRNA_m5C:0.999536712154628 21790 chr16 89970553 89970553 1 + G C COAD 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCACTGTGCGGCCCGACGCCAGCGTTTCC < 41bp 1 0.428830337701615 1 0.334426581859589 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970553 nonsynonymous SNV 0.105 1 16 hm5C_associated_SNPs_20677 0 0 1 0 2 Cytosol 1 0.500231645697012 1 0.999536708605976 hm5C_site_21790 DeepMRMD:1;iRNA_m5C:0.999536708605976 21791 chr5 149406394 149406394 1 + G A COAD 149406376 + 149406356 149406396 41 CATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG CATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCAAG < 41bp 1 0.458810279946377 1 0.151879549026489 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406376 chr5:149406394 nonsynonymous SNV 0.989 1 39 hm5C_associated_SNPs_20678 0 0 1 0 1 Ribosome 1 0.500231631100472 1 0.999536737799057 hm5C_site_21791 DeepMRMD:1;iRNA_m5C:0.999536737799057 21792 chr5 149406394 149406394 1 + G A COAD 149406377 + 149406357 149406397 41 ATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGG ATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCAAGG < 41bp 1 0.160782136043345 1 0.156894147396088 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406377 chr5:149406394 nonsynonymous SNV 0.989 1 38 hm5C_associated_SNPs_20679 0 0 1 0 1 Ribosome 1 0.500231649131887 1 0.999536701736226 hm5C_site_21792 DeepMRMD:1;iRNA_m5C:0.999536701736226 21793 chr5 149406394 149406394 1 + G A COAD 149406378 + 149406358 149406398 41 TGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGC TGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCAAGGC < 41bp 1 0.120750828489363 1 0.220010548830032 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406378 chr5:149406394 nonsynonymous SNV 0.989 1 37 hm5C_associated_SNPs_20680 0 0 1 0 1 Ribosome 1 0.500231643795795 1 0.99953671240841 hm5C_site_21793 DeepMRMD:1;iRNA_m5C:0.99953671240841 21794 chr5 149406394 149406394 1 + G A COAD 149406379 + 149406359 149406399 41 GAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGCA GAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCAAGGCA < 41bp 1 0.127474065562194 1 0.47307762503624 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406379 chr5:149406394 nonsynonymous SNV 0.989 1 36 hm5C_associated_SNPs_20681 0 0 1 0 1 Ribosome 1 0.500231643898232 1 0.999536712203537 hm5C_site_21794 DeepMRMD:1;iRNA_m5C:0.999536712203537 21795 chr5 149406394 149406394 1 + G A COAD 149406393 + 149406373 149406413 41 CAGCCCCAGTTAACGTGGGGCGAGGCAGCAGCATGGGACTG CAGCCCCAGTTAACGTGGGGCAAGGCAGCAGCATGGGACTG < 41bp 1 0.36386616153645 1 0.485583573579788 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406393 chr5:149406394 nonsynonymous SNV 0.989 1 22 hm5C_associated_SNPs_20682 0 0 1 0 1 Ribosome 1 0.500231643918353 1 0.999536712163293 hm5C_site_21795 DeepMRMD:1;iRNA_m5C:0.999536712163293 21796 chr14 105927197 105927197 1 + C T COAD 105927186 + 105927166 105927206 41 TGCCGCAGGGCGGGCCCGTGCTCTGCAGGGACGAGATGGAG TGCCGCAGGGCGGGCCCGTGCTCTGCAGGGATGAGATGGAG < 41bp 1 0.508106075290282 1 0.430985391139984 experiment 0.983787849419436 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105927186 chr14:105927197 synonymous SNV . 0 32 hm5C_associated_SNPs_20684 0 0 1 0 1 Cytosol 1 0.500218543776678 1 0.999562912446645 hm5C_site_21796 DeepMRMD:1;iRNA_m5C:0.999562912446645 21797 chr19 42856465 42856465 1 + C T COAD 42856468 + 42856448 42856488 41 CCTGCCCGCTGGGCATACGCCCGCTGTCCTGACGTGGATGA CCTGCCCGCTGGGCATATGCCCGCTGTCCTGACGTGGATGA < 41bp 1 0.320660779087804 1 0.109099298715591 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42856468 chr19:42856465 synonymous SNV . 0 18 hm5C_associated_SNPs_20685 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921191 1 0.999536712157617 hm5C_site_21797 DeepMRMD:1;iRNA_m5C:0.999536712157617 21798 chr19 46519603 46519603 1 + C T COAD 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCGCTTCGACCCCATGGCCTTTGTGAA < 41bp 1 0.248994196320307 1 0.378118008375168 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519603 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_20686 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_21798 DeepMRMD:1;iRNA_m5C:0.999536712157815 21799 chr17 57754436 57754436 1 + C T COAD 57754417 + 57754397 57754437 41 ATCTACATAGACAGTAATAACAACCCGGAGAGATTTCTTCG ATCTACATAGACAGTAATAACAACCCGGAGAGATTTCTTTG < 41bp 1 0.28222617994828 1 0.115424156188965 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57754417 chr17:57754436 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_20687 0 0 1 0 0 Nucleus 1 0.500231643920845 1 0.99953671215831 hm5C_site_21799 DeepMRMD:1;iRNA_m5C:0.99953671215831 21800 chr6 148808782 148808782 1 + G A COAD 148808768 + 148808748 148808788 41 AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCAGCTGCC < 41bp 1 0.586154188957405 1 0.432416528463364 experiment 0.827691622085189 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148808768 chr6:148808782 synonymous SNV . 0 35 hm5C_associated_SNPs_20688 0 0 0 0 2 Cytosol 1 0.500231643921104 1 0.999536712157793 hm5C_site_21800 DeepMRMD:1;iRNA_m5C:0.999536712157793 21801 chr5 82833364 82833364 1 + A G COAD 82833367 + 82833347 82833387 41 GAATTTGAAAGTGGAACAGCCAAAAAAGGGGCAGAATCAGT GAATTTGAAAGTGGAACGGCCAAAAAAGGGGCAGAATCAGT < 41bp 1 0.126474805711342 1 0.162393242120743 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82833367 chr5:82833364 synonymous SNV . 0 18 hm5C_associated_SNPs_20689 0 0 1 0 0 Ribosome 1 0.500231643921245 1 0.99953671215751 hm5C_site_21801 DeepMRMD:1;iRNA_m5C:0.99953671215751 21802 chr1 162469795 162469795 1 + C T COAD 162469797 + 162469777 162469817 41 TCTCCAAATGTGCCATCACGCTGTCTGTTGCTTGAACTCCT TCTCCAAATGTGCCATCATGCTGTCTGTTGCTTGAACTCCT < 41bp 1 0.312111334838514 1 0.506470680236816 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162469797 chr1:162469795 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_20690 0 0 1 0 1 chromatin 1 0.500231644254277 0.987058639526368 0.999536711491446 hm5C_site_21802 DeepMRMD:0.987058639526368;iRNA_m5C:0.999536711491446 21803 chr3 31621412 31621412 1 + G A COAD 31621422 + 31621402 31621442 41 AACTTTTAGCGGCCTTACATCTATATCTACTTTCCTGCTTA AACTTTTAGCAGCCTTACATCTATATCTACTTTCCTGCTTA < 41bp 1 0.654374913907675 1 0.785038232803345 experiment 0.691250172184651 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31621422 chr3:31621412 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_20691 0 0 1 0 0 Nucleus 1 0.500231643921093 0.42992353439331 0.999536712157815 hm5C_site_21803 DeepMRMD:0.42992353439331;iRNA_m5C:0.999536712157815 21804 chr16 4431738 4431738 1 + T C COAD 4431752 + 4431732 4431772 41 GCCTCTTCCCCCGCCTGCGGCTGCTGGCAGCTGCCCGCAAC GCCTCTCCCCCCGCCTGCGGCTGCTGGCAGCTGCCCGCAAC < 41bp 1 0.582453709990064 1 0.101737946271896 experiment 0.835092580019871 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VASN ENSG00000168140 CDS Human protein_coding chr16:4431752 chr16:4431738 nonsynonymous SNV 0.885 1 7 hm5C_associated_SNPs_20692 0 0 1 0 0 nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_21804 DeepMRMD:1;iRNA_m5C:0.999536712157814 21805 chr6 30856994 30856994 1 + C T COAD 30857005 + 30856985 30857025 41 GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCGG GAGCAGTGATGGGGATGGGGCCTGGTGCCCCGCAGGGTCGG < 41bp 1 0.294694893032719 1 0.389248043298721 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30857005 chr6:30856994 synonymous SNV . 0 10 hm5C_associated_SNPs_20693 0 0 1 0 1 Ribosome 1 0.500231689929215 1 0.99953662014157 hm5C_site_21805 DeepMRMD:1;iRNA_m5C:0.99953662014157 21806 chr19 42814474 42814474 1 + G T COAD 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATATCCCTGATCAAGTCCCAGAGCA < 41bp 1 0.226563105801351 1 0.179033696651459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814474 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_20694 0 0 0 3 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21806 DeepMRMD:1;iRNA_m5C:0.999536712157815 21807 chr17 41585012 41585012 1 + G A COAD 41585007 + 41584987 41585027 41 GATCATCATGTTGGACGAGGCACATGAGAGGACAATTCACA GATCATCATGTTGGACGAGGCACATAAGAGGACAATTCACA < 41bp 1 0.22737445941745 1 0.118501275777817 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41585007 chr17:41585012 nonsynonymous SNV 0.726 4 26 hm5C_associated_SNPs_20695 0 0 1 0 1 Cytosol 1 0.500231643921261 1 0.999536712157479 hm5C_site_21807 DeepMRMD:1;iRNA_m5C:0.999536712157479 21808 chr13 58206842 58206842 1 + C T COAD 58206825 + 58206805 58206845 41 CTCGACTGCAGCCTGGGCTTCCGCCTGCAGAGCGCGGCGGC CTCGACTGCAGCCTGGGCTTCCGCCTGCAGAGCGCGGTGGC < 41bp 1 0.354875263681163 1 0.0829996466636658 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58206825 chr13:58206842 synonymous SNV . 0 38 hm5C_associated_SNPs_20696 0 0 0 0 0 exosome 1 0.500231643840528 1 0.999536712318944 hm5C_site_21808 DeepMRMD:1;iRNA_m5C:0.999536712318944 21809 chr17 79425713 79425713 1 + C T COAD 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCTGGA < 41bp 1 0.0188490017223262 1 0.0357722043991089 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425713 nonsynonymous SNV 0.692 3 38 hm5C_associated_SNPs_20697 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_21809 DeepMRMD:1;iRNA_m5C:0.999536712157815 21810 chr11 120776140 120776140 1 + G A COAD 120776153 + 120776133 120776173 41 GGATGGCGTGTACGGCGTTCCCGAGGCCAACGGCACCTGGA GGATGGCATGTACGGCGTTCCCGAGGCCAACGGCACCTGGA < 41bp 1 0.295721719246775 1 0.748627901077271 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120776153 chr11:120776140 nonsynonymous SNV 0.455 1 8 hm5C_associated_SNPs_20698 0 0 0 0 0 membrane 1 0.500231643918124 0.502744197845458 0.999536712163752 hm5C_site_21810 DeepMRMD:0.502744197845458;iRNA_m5C:0.999536712163752 21811 chrX 153641559 153641559 1 + G T COAD 153641548 + 153641528 153641568 41 CTTTCCTGTCCTCTAGGGATCCTGAAACTCCGCCACATCTG CTTTCCTGTCCTCTAGGGATCCTGAAACTCCTCCACATCTG < 41bp 1 0.353034361279031 1 0.100788027048111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAZ ENSG00000102125 CDS Human protein_coding chrX:153641548 chrX:153641559 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_20699 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_21811 DeepMRMD:1;iRNA_m5C:0.999536712157815 21812 chr8 144332293 144332293 1 + C T COAD 144332280 + 144332260 144332300 41 AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCGGATCTT AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGTGGATCTT < 41bp 1 0.213667710095228 1 0.189714044332504 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP41 ENSG00000181638;ENSG00000264668 CDS Human other chr8:144332280 chr8:144332293 nonsynonymous SNV 0.123 1 34 hm5C_associated_SNPs_20700 0 0 1 1 0 chromatin 1 0.50023165517157 1 0.999536689656861 hm5C_site_21812 DeepMRMD:1;iRNA_m5C:0.999536689656861 21813 chr19 11141565 11141565 1 + A C COAD 11141582 + 11141562 11141602 41 CTCACCAGGTAAAAGCGGGCCGGGCCCCAGGTCGAGGAGAA CTCCCCAGGTAAAAGCGGGCCGGGCCCCAGGTCGAGGAGAA < 41bp 1 0.202960838849361 1 0.347396731376648 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141582 chr19:11141565 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_20701 0 0 1 0 1 Nucleus 1 0.500231643864613 1 0.999536712270775 hm5C_site_21813 DeepMRMD:1;iRNA_m5C:0.999536712270775 21814 chr3 122419715 122419715 1 + T C COAD 122419700 + 122419680 122419720 41 TTTATCAAAGTGAGATCAAACGGTTGTTTGGTTGTTACATT TTTATCAAAGTGAGATCAAACGGTTGTTTGGTTGTCACATT < 41bp 1 0.34042300390623 1 0.481173008680344 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARP14 ENSG00000173193 CDS Human protein_coding chr3:122419700 chr3:122419715 nonsynonymous SNV 0.014 0 36 hm5C_associated_SNPs_20702 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_21814 DeepMRMD:1;iRNA_m5C:0.999536712157815 21815 chr2 46803717 46803717 1 + C T COAD 46803731 + 46803711 46803751 41 AGATGACCCCAAAACTTTAGCAAGACTGAATGATATGAAAG AGATGATCCCAAAACTTTAGCAAGACTGAATGATATGAAAG < 41bp 1 0.647989727544266 1 0.541305661201477 experiment 0.704020544911468 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOQ ENSG00000119729 CDS Human protein_coding chr2:46803731 chr2:46803717 synonymous SNV . 0 7 hm5C_associated_SNPs_20703 0 0 1 0 2 nucleoplasm 1 0.500231643920913 0.917388677597046 0.999536712158174 hm5C_site_21815 DeepMRMD:0.917388677597046;iRNA_m5C:0.999536712158174 21816 chr11 63719956 63719956 1 + T C COAD 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCACCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.612259259100026 1 0.718236207962036 experiment 0.775481481799948 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719956 nonsynonymous SNV 0.991 2 8 hm5C_associated_SNPs_20704 0 0 1 0 2 Ribosome 1 0.500231643921093 0.563527584075928 0.999536712157815 hm5C_site_21816 DeepMRMD:0.563527584075928;iRNA_m5C:0.999536712157815 21817 chr1 218504392 218504392 1 + G C COAD 218504390 + 218504370 218504410 41 GGACAAGGAAAGTGATGGGCCAGATGACAGCAGACCAGAAT GGACAAGGAAAGTGATGGGCCACATGACAGCAGACCAGAAT < 41bp 1 0.372800961209253 1 0.266975879669189 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RRP15 ENSG00000067533 CDS Human protein_coding chr1:218504390 chr1:218504392 nonsynonymous SNV 0.003 2 23 hm5C_associated_SNPs_20705 0 0 1 0 0 Ribosome 1 0.500231644849478 1 0.999536710301044 hm5C_site_21817 DeepMRMD:1;iRNA_m5C:0.999536710301044 21818 chr1 171501777 171501777 1 + G A COAD 171501758 + 171501738 171501778 41 AGGAAATTAGGGAAAGGGAGCGAGAAAAAGAACGGGAGCGT AGGAAATTAGGGAAAGGGAGCGAGAAAAAGAACGGGAGCAT < 41bp 1 0.632620930946527 1 0.774771928787231 experiment 0.734758138106946 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171501758 chr1:171501777 nonsynonymous SNV 0.952 1 40 hm5C_associated_SNPs_20706 0 0 1 0 0 Cytosol 1 0.500231642253023 0.450456142425538 0.999536715493954 hm5C_site_21818 DeepMRMD:0.450456142425538;iRNA_m5C:0.999536715493954 21819 chr6 29976018 29976018 1 + C T COAD 29976024 + 29976004 29976044 41 AACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACC AACATGAGGCATAATGAGGTCCTGGGTTCTGGGCTTCTACC < 41bp 1 0.174321535738081 1 0.239664971828461 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976024 chr6:29976018 . . 0 15 hm5C_associated_SNPs_20707 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_21819 DeepMRMD:1;iRNA_m5C:0.999536712157815 21820 chr6 29976018 29976018 1 + C T COAD 29976025 + 29976005 29976045 41 ACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACCC ACATGAGGCATAATGAGGTCCTGGGTTCTGGGCTTCTACCC < 41bp 1 0.523043487840369 1 0.719613909721375 experiment 0.953913024319262 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976025 chr6:29976018 . . 0 14 hm5C_associated_SNPs_20708 0 0 0 0 1 unknown 1 0.500231643921092 0.56077218055725 0.999536712157815 hm5C_site_21820 DeepMRMD:0.56077218055725;iRNA_m5C:0.999536712157815 21821 chr15 42059323 42059323 1 + G A COAD 42059304 + 42059284 42059324 41 GATGCAGATGGTCAGAGTCTCAAGGTGATGCCTTGTTTGGC GATGCAGATGGTCAGAGTCTCAAGGTGATGCCTTGTTTGAC < 41bp 1 0.461297494880068 1 0.742642819881439 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42059304 chr15:42059323 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_20709 0 0 1 0 0 Cytosol 1 0.500231623694276 0.514714360237122 0.999536752611448 hm5C_site_21821 DeepMRMD:0.514714360237122;iRNA_m5C:0.999536752611448 21822 chr11 126124304 126124304 1 + C T COAD 126124316 + 126124296 126124336 41 TATCAGAACGTGCTCAGGAACACTGAAGTCATGGTGAGTGG TATCAGAATGTGCTCAGGAACACTGAAGTCATGGTGAGTGG < 41bp 1 0.661040193463112 1 0.0582033097743988 experiment 0.677919613073775 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM118B ENSG00000197798 CDS Human protein_coding chr11:126124316 chr11:126124304 synonymous SNV . 0 9 hm5C_associated_SNPs_20710 0 0 1 0 1 Ribosome 1 0.500231437031974 1 0.999537125936052 hm5C_site_21822 DeepMRMD:1;iRNA_m5C:0.999537125936052 21823 chr5 71493386 71493386 1 + C T COAD 71493379 + 71493359 71493399 41 AAAGTTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATC AAAGTTTTGTCTCCTTTACGCAGCCCGTCCCTCATTGGATC < 41bp 1 0.181437589590954 1 0.160320609807968 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493379 chr5:71493386 nonsynonymous SNV 0.601 3 28 hm5C_associated_SNPs_20712 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21823 DeepMRMD:1;iRNA_m5C:0.999536712157815 21824 chr5 71493386 71493386 1 + C T COAD 71493383 + 71493363 71493403 41 TTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATCCGAG TTTTGTCTCCTTTACGCAGCCCGTCCCTCATTGGATCCGAG < 41bp 1 0.0167045988462703 1 0.0934779047966003 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493383 chr5:71493386 nonsynonymous SNV 0.601 3 24 hm5C_associated_SNPs_20713 0 0 1 0 0 Cytosol 1 0.500231685425326 1 0.999536629149348 hm5C_site_21824 DeepMRMD:1;iRNA_m5C:0.999536629149348 21825 chr12 31242360 31242360 1 + G A COAD 31242340 + 31242320 31242360 41 TTTCTCCTTTGCTGCAGAACCTTTGTGTAAATGAAGACGTG TTTCTCCTTTGCTGCAGAACCTTTGTGTAAATGAAGACGTA < 41bp 1 0.178886487055053 1 0.100646138191223 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31242340 chr12:31242360 synonymous SNV . 0 41 hm5C_associated_SNPs_20714 0 0 1 0 2 Cytosol 1 0.500231643401927 1 0.999536713196145 hm5C_site_21825 DeepMRMD:1;iRNA_m5C:0.999536713196145 21826 chr6 31594935 31594935 1 + G A COAD 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACCCCCACCTCACCAGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.314963511691248 1 0.0947019755840302 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594935 nonsynonymous SNV 0.995 1 17 hm5C_associated_SNPs_20715 0 0 1 0 1 Ribosome 1 0.500231643919602 1 0.999536712160797 hm5C_site_21826 DeepMRMD:1;iRNA_m5C:0.999536712160797 21827 chr6 31594935 31594935 1 + G A COAD 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACCCCCACCTCACCAGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.266620200037898 1 0.111638307571411 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594935 nonsynonymous SNV 0.995 1 16 hm5C_associated_SNPs_20716 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21827 DeepMRMD:1;iRNA_m5C:0.999536712157815 21828 chr6 31594935 31594935 1 + G A COAD 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACCCCCACCTCACCAGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.325194310945789 1 0.167896419763565 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594935 nonsynonymous SNV 0.995 1 15 hm5C_associated_SNPs_20717 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_21828 DeepMRMD:1;iRNA_m5C:0.999536712157815 21829 chr6 31594935 31594935 1 + G A COAD 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CCCCCACCTCACCAGGGCCCCGCCGGGAACTGGGGCCCCCC < 41bp 1 0.549831242520772 1 0.479517370462418 experiment 0.900337514958457 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594935 nonsynonymous SNV 0.995 1 14 hm5C_associated_SNPs_20718 0 0 1 0 1 Ribosome 1 0.500231644927118 1 0.999536710145764 hm5C_site_21829 DeepMRMD:1;iRNA_m5C:0.999536710145764 21830 chr9 135073621 135073621 1 + G A COAD 135073628 + 135073608 135073648 41 AACGGGCGCACCTGGCAGCCCTACCAGTTCTACGCCGAGGA AACGGGCGCACCTAGCAGCCCTACCAGTTCTACGCCGAGGA < 41bp 1 0.134832339340473 1 0.0601057410240173 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135073628 chr9:135073621 stopgain 1.000 1 14 hm5C_associated_SNPs_20719 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21830 DeepMRMD:1;iRNA_m5C:0.999536712157815 21831 chr11 108206581 108206581 1 + G A COAD 108206601 + 108206581 108206621 41 GACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT AACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT < 41bp 1 0.176483462405723 1 0.204371392726898 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108206601 chr11:108206581 nonsynonymous SNV 1.000 5 1 hm5C_associated_SNPs_20720 0 0 1 0 1 Nucleus 1 0.500231643926184 1 0.999536712147632 hm5C_site_21831 DeepMRMD:1;iRNA_m5C:0.999536712147632 21832 chr2 227729833 227729833 1 + G A COAD 227729840 + 227729820 227729860 41 GAGCTGTGCTGTAGGTTTCTCAGGTAAGGGAGACAAAATTT GAGCTGTGCTGTAAGTTTCTCAGGTAAGGGAGACAAAATTT < 41bp 1 0.653636499310703 1 0.492668092250824 experiment 0.692727001378594 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RHBDD1 ENSG00000144468 CDS Human protein_coding chr2:227729840 chr2:227729833 nonsynonymous SNV 0.938 5 14 hm5C_associated_SNPs_20723 0 0 1 0 1 Endoplasmic reticulum 1 0.500229411211883 1 0.999541177576234 hm5C_site_21832 DeepMRMD:1;iRNA_m5C:0.999541177576234 21833 chr7 73731907 73731907 1 + G A COAD 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCA < 41bp 1 0.393373121759545 1 0.276349872350693 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731907 nonsynonymous SNV 0.979 1 25 hm5C_associated_SNPs_20724 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21833 DeepMRMD:1;iRNA_m5C:0.999536712157815 21834 chr7 73731907 73731907 1 + G A COAD 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCAC < 41bp 1 0.20554132657255 1 0.0744117498397827 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731907 nonsynonymous SNV 0.979 1 24 hm5C_associated_SNPs_20725 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21834 DeepMRMD:1;iRNA_m5C:0.999536712157815 21835 chr7 73731907 73731907 1 + G A COAD 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCACT < 41bp 1 0.0982482867925179 1 0.23232427239418 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731907 nonsynonymous SNV 0.979 1 23 hm5C_associated_SNPs_20726 0 0 0 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_21835 DeepMRMD:1;iRNA_m5C:0.999536712157815 21836 chr7 73731907 73731907 1 + G A COAD 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCACTC < 41bp 1 0.343846647390804 1 0.331148386001587 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731907 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_20727 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21836 DeepMRMD:1;iRNA_m5C:0.999536712157815 21837 chr10 129866475 129866475 1 + T C COAD 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTCGGAGTGCCTTTTACCCCCACTGGGATGCTGAAGTTCC < 41bp 1 0.208866457753524 1 0.0620485544204712 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866475 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_20728 0 0 0 3 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21837 DeepMRMD:1;iRNA_m5C:0.999536712157815 21838 chr1 230384963 230384963 1 + A G COAD 230384969 + 230384949 230384989 41 ATTCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCC ATTCAAGTGGGATTGCATGACGCCTGAGCAGAGAAGGTCCC < 41bp 1 0.528431795550796 1 0.390819668769836 experiment 0.943136408898408 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384969 chr1:230384963 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_20730 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643728519 1 0.999536712542963 hm5C_site_21838 DeepMRMD:1;iRNA_m5C:0.999536712542963 21839 chr1 230384963 230384963 1 + A G COAD 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTGCATGACGCCTGAGCAGAGAAGGTCCCGG < 41bp 1 0.366958723857119 1 0.0735989511013031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384963 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_20731 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643919327 1 0.999536712161345 hm5C_site_21839 DeepMRMD:1;iRNA_m5C:0.999536712161345 21840 chrX 11781098 11781098 1 + A G COAD 11781084 + 11781064 11781104 41 CACGTTATGCCACATGCCAACATGAACGTGCATTATATCCC CACGTTATGCCACATGCCAACATGAACGTGCATTGTATCCC < 41bp 1 0.594364357339142 1 0.0483740866184235 experiment 0.811271285321717 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MSL3 ENSG00000005302 CDS Human protein_coding chrX:11781084 chrX:11781098 nonsynonymous SNV 0.999 2 35 hm5C_associated_SNPs_20732 0 0 1 0 1 Cytosol 1 0.500231625045398 1 0.999536749909203 hm5C_site_21840 DeepMRMD:1;iRNA_m5C:0.999536749909203 21841 chr12 110032884 110032884 1 + G A COAD 110032880 + 110032860 110032900 41 CTGAATGCCCTCGGCGTGGGCCACGCCTCTCTGGACCAGCT CTGAATGCCCTCGGCGTGGGCCACACCTCTCTGGACCAGCT < 41bp 1 0.285995988125116 1 0.121234834194183 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVK ENSG00000110921 CDS Human protein_coding chr12:110032880 chr12:110032884 nonsynonymous SNV 0.235 1 25 hm5C_associated_SNPs_20733 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_21841 DeepMRMD:1;iRNA_m5C:0.999536712157815 21842 chr7 140379043 140379043 1 + G A COAD 140379056 + 140379036 140379076 41 CCTCTGCGCCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC CCTCTGCACCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC < 41bp 1 0.570935841063828 1 0.734023034572601 experiment 0.858128317872344 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140379056 chr7:140379043 nonsynonymous SNV 0.883 0 8 hm5C_associated_SNPs_20734 0 0 1 0 2 Ribosome 1 0.500231643921001 0.531953930854798 0.999536712157998 hm5C_site_21842 DeepMRMD:0.531953930854798;iRNA_m5C:0.999536712157998 21843 chr10 43971260 43971260 1 + T C COAD 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCCGTACAGAGACACGATGCTGG < 41bp 1 0.391649731862259 1 0.343517273664474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971260 nonsynonymous SNV 0.052 1 33 hm5C_associated_SNPs_20735 0 0 0 0 2 exosome 1 0.500231662255041 1 0.999536675489917 hm5C_site_21843 DeepMRMD:1;iRNA_m5C:0.999536675489917 21844 chr6 43155545 43155545 1 + C T COAD 43155540 + 43155520 43155560 41 CTCAGTAGTCGATTTGAGGGCAGCACTCTCAATGACCTGCT CTCAGTAGTCGATTTGAGGGCAGCATTCTCAATGACCTGCT < 41bp 1 0.594234426116058 1 0.129862308502197 experiment 0.811531147767884 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43155540 chr6:43155545 nonsynonymous SNV 0.968 1 26 hm5C_associated_SNPs_20736 0 0 0 0 1 chromatin 1 0.500231643597578 1 0.999536712804845 hm5C_site_21844 DeepMRMD:1;iRNA_m5C:0.999536712804845 21845 chr19 6368637 6368637 1 + G T COAD 6368635 + 6368615 6368655 41 AGGTTCTGGTCCACCCTCCCCAGGACGGTGAGGATGAGCCC AGGTTCTGGTCCACCCTCCCCATGACGGTGAGGATGAGCCC < 41bp 1 0.644318610585581 1 0.111935287714005 experiment 0.711362778828837 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6368635 chr19:6368637 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_20737 0 0 1 0 0 Cytosol 1 0.500231631830707 1 0.999536736338587 hm5C_site_21845 DeepMRMD:1;iRNA_m5C:0.999536736338587 21846 chr13 53216743 53216743 1 + C T COAD 53216749 + 53216729 53216769 41 TGAGCAATGGGGAACGCTCACAGACTGTGTGGTAATGAGAG TGAGCAATGGGGAATGCTCACAGACTGTGTGGTAATGAGAG < 41bp 1 0.543108370143554 1 0.121227890253067 experiment 0.913783259712893 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HNRNPA1L2 ENSG00000139675 CDS Human protein_coding chr13:53216749 chr13:53216743 nonsynonymous SNV 0.030 1 15 hm5C_associated_SNPs_20738 0 0 0 0 0 Ribosome 1 0.500230618125097 1 0.999538763749806 hm5C_site_21846 DeepMRMD:1;iRNA_m5C:0.999538763749806 21847 chr3 50091791 50091791 1 + C T COAD 50091805 + 50091785 50091825 41 TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG TGGGCATCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG < 41bp 1 0.0589785914824919 1 0.0194380879402161 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091805 chr3:50091791 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_20739 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_21847 DeepMRMD:1;iRNA_m5C:0.999536712157816 21848 chr13 114203838 114203838 1 + A G COAD 114203826 + 114203806 114203846 41 GCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG GCAATCACGAGGTGTGTGCCCAGACCGGAGAGGCGGTCCAG < 41bp 1 0.629846424906257 1 0.210719019174576 experiment 0.740307150187486 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203826 chr13:114203838 synonymous SNV . 0 33 hm5C_associated_SNPs_20741 0 0 0 0 1 Ribosome 1 0.500231579456831 1 0.999536841086339 hm5C_site_21848 DeepMRMD:1;iRNA_m5C:0.999536841086339 21849 chr2 11053271 11053271 1 + G A COAD 11053264 + 11053244 11053284 41 GCTGGTTCACCCTGGAGTACCTGCTGCGCCTCTTCTCGTCA GCTGGTTCACCCTGGAGTACCTGCTGCACCTCTTCTCGTCA < 41bp 1 0.543653562533604 1 0.126196473836899 experiment 0.912692874932792 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11053264 chr2:11053271 nonsynonymous SNV 0.999 5 28 hm5C_associated_SNPs_20743 0 0 0 0 0 exosome 1 0.500230768008364 1 0.999538463983272 hm5C_site_21849 DeepMRMD:1;iRNA_m5C:0.999538463983272 21850 chr14 105936304 105936304 1 + T C COAD 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGCT < 41bp 1 0.508479975769267 1 0.678425908088684 experiment 0.983040048461467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936304 nonsynonymous SNV 0.989 1 40 hm5C_associated_SNPs_20744 0 0 1 1 1 Cytosol 1 0.500231643966737 0.643148183822632 0.999536712066527 hm5C_site_21850 DeepMRMD:0.643148183822632;iRNA_m5C:0.999536712066527 21851 chr14 105936304 105936304 1 + T C COAD 105936315 + 105936295 105936335 41 GATGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGG GATGACGTGCTCTACATGGCCACAGAGGAGACCAGGTGGGG < 41bp 1 0.557400716677323 1 0.757834672927856 experiment 0.885198566645354 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936315 chr14:105936304 nonsynonymous SNV 0.989 1 10 hm5C_associated_SNPs_20745 0 0 1 1 1 Cytosol 1 0.500231643920871 0.484330654144288 0.999536712158258 hm5C_site_21851 DeepMRMD:0.484330654144288;iRNA_m5C:0.999536712158258 21852 chr14 105936304 105936304 1 + T C COAD 105936317 + 105936297 105936337 41 TGACGTGTTCTACATGGCCACAGAGGAGACCAGGTGGGGCC TGACGTGCTCTACATGGCCACAGAGGAGACCAGGTGGGGCC < 41bp 1 0.62621413888414 1 0.744315326213837 experiment 0.74757172223172 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936317 chr14:105936304 nonsynonymous SNV 0.989 1 8 hm5C_associated_SNPs_20746 0 0 1 1 1 Cytosol 1 0.500231643919997 0.511369347572326 0.999536712160005 hm5C_site_21852 DeepMRMD:0.511369347572326;iRNA_m5C:0.999536712160005 21853 chr6 117869512 117869512 1 + C T COAD 117869492 + 117869472 117869512 41 CCCTCGCCACCGAAAGCGGGCACCCTGACTCTCAGAAGCCC CCCTCGCCACCGAAAGCGGGCACCCTGACTCTCAGAAGCCT < 41bp 1 0.342918542585021 1 0.0439640581607819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117869492 chr6:117869512 synonymous SNV . 0 41 hm5C_associated_SNPs_20747 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644099923 1 0.999536711800154 hm5C_site_21853 DeepMRMD:1;iRNA_m5C:0.999536711800154 21854 chr9 35389883 35389883 1 + G A COAD 35389874 + 35389854 35389894 41 ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAACCTGGATT ACCTCCAGAGGAACAAGGGCCCAGCATTCAGAACCTGGATT < 41bp 1 0.0762310902433622 1 0.104371607303619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UNC13B ENSG00000198722 CDS Human protein_coding chr9:35389874 chr9:35389883 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_20748 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21854 DeepMRMD:1;iRNA_m5C:0.999536712157815 21855 chr21 47831419 47831419 1 + G A COAD 47831434 + 47831414 47831454 41 GGAGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGC GGAGCACAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGC < 41bp 1 0.109104124911962 1 0.206415951251984 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831434 chr21:47831419 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_20749 0 0 0 0 0 Exosome 1 0.500231643921087 1 0.999536712157827 hm5C_site_21855 DeepMRMD:1;iRNA_m5C:0.999536712157827 21856 chr21 47831419 47831419 1 + G A COAD 47831435 + 47831415 47831455 41 GAGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGCG GAGCACAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGCG < 41bp 1 0.147388031251332 1 0.363176912069321 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831435 chr21:47831419 nonsynonymous SNV 0.000 0 5 hm5C_associated_SNPs_20750 0 0 0 0 0 Exosome 1 0.500229200121031 1 0.999541599757938 hm5C_site_21856 DeepMRMD:1;iRNA_m5C:0.999541599757938 21857 chr21 47831419 47831419 1 + G A COAD 47831436 + 47831416 47831456 41 AGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGCGC AGCACAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGCGC < 41bp 1 0.689440116608569 1 0.572886049747467 experiment 0.621119766782862 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831436 chr21:47831419 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_20751 0 0 0 0 0 Exosome 1 0.500231644046362 0.854227900505066 0.999536711907276 hm5C_site_21857 DeepMRMD:0.854227900505066;iRNA_m5C:0.999536711907276 21858 chr7 87005027 87005027 1 + A G COAD 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGCGAGCTCGATGGGCTAAGGTT < 41bp 1 0.331125428162424 1 0.422387301921844 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005027 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_20752 0 0 1 0 2 Nucleus 1 0.500231643913445 1 0.999536712173109 hm5C_site_21858 DeepMRMD:1;iRNA_m5C:0.999536712173109 21859 chr19 51227336 51227336 1 + G T COAD 51227338 + 51227318 51227358 41 CCCACCCCTGAGGACATCGTCACTTACATCCGTGAGTAACC CCCACCCCTGAGGACATCTTCACTTACATCCGTGAGTAACC < 41bp 1 0.175515614572128 1 0.0460518300533295 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLEC11A ENSG00000105472 CDS Human protein_coding chr19:51227338 chr19:51227336 nonsynonymous SNV 0.870 0 19 hm5C_associated_SNPs_20753 0 0 0 0 1 Ribosome 1 0.500231643760334 1 0.999536712479332 hm5C_site_21859 DeepMRMD:1;iRNA_m5C:0.999536712479332 21860 chr16 67662309 67662309 1 + G A COAD 67662319 + 67662299 67662339 41 CACCCACACCGGGGAGAAGCCTTACGCCTGCAGCCACTGCG CACCCACACCAGGGAGAAGCCTTACGCCTGCAGCCACTGCG < 41bp 1 0.247194007926442 1 0.204499185085297 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CTCF ENSG00000102974 CDS Human protein_coding chr16:67662319 chr16:67662309 nonsynonymous SNV 0.816 4 11 hm5C_associated_SNPs_20754 0 0 1 0 0 Nucleus 1 0.500231643921221 1 0.999536712157559 hm5C_site_21860 DeepMRMD:1;iRNA_m5C:0.999536712157559 21861 chr12 71977626 71977626 1 + G A COAD 71977616 + 71977596 71977636 41 GAACATGCTCACGGGAGTCTCCAGTGCCGTGCTGGCTGGTG GAACATGCTCACGGGAGTCTCCAGTGCCGTACTGGCTGGTG < 41bp 1 0.465961649866001 1 0.804587841033936 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LGR5 ENSG00000139292 CDS Human protein_coding chr12:71977616 chr12:71977626 synonymous SNV . 0 31 hm5C_associated_SNPs_20755 0 0 1 0 1 Nucleus 1 0.500231643921141 0.390824317932128 0.999536712157719 hm5C_site_21861 DeepMRMD:0.390824317932128;iRNA_m5C:0.999536712157719 21862 chr16 30096341 30096341 1 + G T COAD 30096347 + 30096327 30096367 41 CCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC CCCCAAGAGACACGTGGCATCCCCTCCAAGAAGCCCGTGGC < 41bp 1 0.316594357873112 1 0.239750683307648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096347 chr16:30096341 synonymous SNV . 0 15 hm5C_associated_SNPs_20757 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21862 DeepMRMD:1;iRNA_m5C:0.999536712157815 21863 chr11 244741 244741 1 + G A COAD 244747 + 244727 244767 41 TAAAATTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA TAAAATTAAACATCAGGGACCTACAGGTTACAAAGGTGAGA < 41bp 1 0.316884040433787 1 0.15288171172142 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:244747 chr11:244741 nonsynonymous SNV 0.968 2 15 hm5C_associated_SNPs_20758 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21863 DeepMRMD:1;iRNA_m5C:0.999536712157815 21864 chr16 77775705 77775705 1 + C T COAD 77775688 + 77775668 77775708 41 CCTGAAGACGGTGTCACTTACCAGATCAAGGGAATGACGGC CCTGAAGACGGTGTCACTTACCAGATCAAGGGAATGATGGC < 41bp 1 0.635328711361543 1 0.436640113592148 experiment 0.729342577276914 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77775688 chr16:77775705 nonsynonymous SNV 0.009 4 38 hm5C_associated_SNPs_20759 0 0 0 0 0 nucleoplasm 1 0.500230947070411 1 0.999538105859178 hm5C_site_21864 DeepMRMD:1;iRNA_m5C:0.999538105859178 21865 chr16 77775705 77775705 1 + C T COAD 77775689 + 77775669 77775709 41 CTGAAGACGGTGTCACTTACCAGATCAAGGGAATGACGGCA CTGAAGACGGTGTCACTTACCAGATCAAGGGAATGATGGCA < 41bp 1 0.485028227217066 1 0.771362543106079 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77775689 chr16:77775705 nonsynonymous SNV 0.009 4 37 hm5C_associated_SNPs_20760 0 0 0 0 0 nucleoplasm 1 0.500231760588564 0.457274913787842 0.999536478822872 hm5C_site_21865 DeepMRMD:0.457274913787842;iRNA_m5C:0.999536478822872 21866 chr16 77775705 77775705 1 + C T COAD 77775694 + 77775674 77775714 41 GACGGTGTCACTTACCAGATCAAGGGAATGACGGCAAACCT GACGGTGTCACTTACCAGATCAAGGGAATGATGGCAAACCT < 41bp 1 0.697732754644184 1 0.738138914108276 experiment 0.604534490711631 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77775694 chr16:77775705 nonsynonymous SNV 0.009 4 32 hm5C_associated_SNPs_20761 0 0 0 0 0 nucleoplasm 1 0.500231643828186 0.523722171783448 0.999536712343628 hm5C_site_21866 DeepMRMD:0.523722171783448;iRNA_m5C:0.999536712343628 21867 chr19 10886448 10886448 1 + T C COAD 10886461 + 10886441 10886481 41 CCAGACATCGAGTACCAGATCAAGGACATGATCCTGCAGTT CCAGACACCGAGTACCAGATCAAGGACATGATCCTGCAGTT < 41bp 1 0.614055932346319 1 0.828719854354858 experiment 0.771888135307362 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886461 chr19:10886448 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_20762 0 0 1 2 0 Nucleus 1 0.500231643921093 0.342560291290284 0.999536712157814 hm5C_site_21867 DeepMRMD:0.342560291290284;iRNA_m5C:0.999536712157814 21868 chr5 71491928 71491928 1 + G A COAD 71491948 + 71491928 71491968 41 GAGAAGCAGGGAGTAGACGACATTGAAAAATTTGAAGATGA AAGAAGCAGGGAGTAGACGACATTGAAAAATTTGAAGATGA < 41bp 1 0.0866685267698601 1 0.12386617064476 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71491948 chr5:71491928 nonsynonymous SNV 0.951 2 1 hm5C_associated_SNPs_20763 0 0 1 0 0 Cytosol 1 0.500231641660482 1 0.999536716679037 hm5C_site_21868 DeepMRMD:1;iRNA_m5C:0.999536716679037 21869 chr19 1295783 1295783 1 + C G COAD 1295771 + 1295751 1295791 41 GCCCGCGGCGCCCGGGGGGCCGCTCAAGTTCTCGGAGAAGT GCCCGCGGCGCCCGGGGGGCCGCTCAAGTTCTGGGAGAAGT < 41bp 1 0.137211908256527 1 0.426900446414948 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EFNA2 ENSG00000099617 CDS Human protein_coding chr19:1295771 chr19:1295783 nonsynonymous SNV 0.995 4 33 hm5C_associated_SNPs_20764 0 0 0 0 1 exosome 1 0.500231654436892 1 0.999536691126216 hm5C_site_21869 DeepMRMD:1;iRNA_m5C:0.999536691126216 21870 chr6 144747512 144747512 1 + G A COAD 144747498 + 144747478 144747518 41 AGATCCTGCTCAGCTGGGTGCGTCAGACCACCAGGCCCTAC AGATCCTGCTCAGCTGGGTGCGTCAGACCACCAGACCCTAC < 41bp 1 0.258791656425398 1 0.115828961133957 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144747498 chr6:144747512 synonymous SNV . 0 35 hm5C_associated_SNPs_20766 0 0 1 0 2 Nucleus 1 0.500231640609829 1 0.999536718780342 hm5C_site_21870 DeepMRMD:1;iRNA_m5C:0.999536718780342 21871 chr14 102445749 102445749 1 + C T COAD 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTATGA < 41bp 1 0.203208279956009 1 0.605157017707825 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445749 synonymous SNV . 0 39 hm5C_associated_SNPs_20767 0 0 1 0 2 Cytosol 1 0.500231643921086 0.78968596458435 0.999536712157828 hm5C_site_21871 DeepMRMD:0.78968596458435;iRNA_m5C:0.999536712157828 21872 chr19 18679377 18679377 1 + A C COAD 18679364 + 18679344 18679384 41 TGAGCCCCGGCTTCGAGGACCTGTCCCATGTCCAGCCTGGC TGAGCCCCGGCTTCGAGGACCTGTCCCATGTCCCGCCTGGC < 41bp 1 0.163051911345105 1 0.296547621488571 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KXD1 ENSG00000105700 CDS Human protein_coding chr19:18679364 chr19:18679377 nonsynonymous SNV 0.002 0 34 hm5C_associated_SNPs_20768 0 0 1 0 0 Ribosome 1 0.500231643892386 1 0.999536712215227 hm5C_site_21872 DeepMRMD:1;iRNA_m5C:0.999536712215227 21873 chr5 176468195 176468195 1 + C T COAD 176468185 + 176468165 176468205 41 AACACCCAGTGTAAGGTTTGCTGCGCCTTGCTTATTTCTGA AACACCCAGTGTAAGGTTTGCTGCGCCTTGTTTATTTCTGA < 41bp 1 0.426910484551455 1 0.119156390428543 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF346 ENSG00000113761 CDS Human protein_coding chr5:176468185 chr5:176468195 nonsynonymous SNV 0.937 4 31 hm5C_associated_SNPs_20770 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_21873 DeepMRMD:1;iRNA_m5C:0.999536712157815 21874 chr19 45801166 45801166 1 + C A COAD 45801148 + 45801128 45801168 41 CCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCC CCCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCACC < 41bp 1 0.349444360676973 1 0.265886813402176 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801148 chr19:45801166 nonsynonymous SNV 0.992 0 39 hm5C_associated_SNPs_20771 0 0 1 0 1 Nucleus 1 0.500229608536914 1 0.999540782926172 hm5C_site_21874 DeepMRMD:1;iRNA_m5C:0.999540782926172 21875 chr19 45801166 45801166 1 + C A COAD 45801149 + 45801129 45801169 41 CCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCA CCATGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCACCA < 41bp 1 0.355073937990103 1 0.157553374767303 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801149 chr19:45801166 nonsynonymous SNV 0.992 0 38 hm5C_associated_SNPs_20772 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21875 DeepMRMD:1;iRNA_m5C:0.999536712157815 21876 chr19 45801166 45801166 1 + C A COAD 45801152 + 45801132 45801172 41 TGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCACCA TGAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCACCACCA < 41bp 1 0.53162106113114 1 0.792040228843689 experiment 0.93675787773772 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801152 chr19:45801166 nonsynonymous SNV 0.992 0 35 hm5C_associated_SNPs_20773 0 0 1 0 1 Nucleus 1 0.500231643633053 0.415919542312622 0.999536712733894 hm5C_site_21876 DeepMRMD:0.415919542312622;iRNA_m5C:0.999536712733894 21877 chr19 45801166 45801166 1 + C A COAD 45801153 + 45801133 45801173 41 GAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCCCCACCAC GAGGCTGCACCCCTGCCCGCCGGGCGGCCCCGCACCACCAC < 41bp 1 0.635736500663341 1 0.931148409843445 experiment 0.728526998673318 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801153 chr19:45801166 nonsynonymous SNV 0.992 0 34 hm5C_associated_SNPs_20774 0 0 1 0 1 Nucleus 1 0.500231412402473 0.13770318031311 0.999537175195053 hm5C_site_21877 DeepMRMD:0.13770318031311;iRNA_m5C:0.999537175195053 21878 chr17 37360385 37360385 1 + C T COAD 37360369 + 37360349 37360389 41 AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCAT AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTTTCAT < 41bp 1 0.60767556218297 1 0.366752326488495 experiment 0.784648875634061 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360369 chr17:37360385 nonsynonymous SNV 0.997 3 37 hm5C_associated_SNPs_20775 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_21878 DeepMRMD:1;iRNA_m5C:0.999536712157815 21879 chr9 96411440 96411440 1 + G A COAD 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG ACACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG < 41bp 1 0.472142893507484 1 0.36801078915596 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411440 nonsynonymous SNV 0.995 1 1 hm5C_associated_SNPs_20776 0 0 1 0 2 chromatin 1 0.499997683708281 1 1 hm5C_site_21879 DeepMRMD:1;iRNA_m5C:1 21880 chr7 70252226 70252226 1 + C T COAD 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTCGGCCACAAGGATGGTCCCAGTGTGCAGAACTTTAGCA < 41bp 1 0.142859920684513 1 0.0729041397571564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252226 synonymous SNV . 0 19 hm5C_associated_SNPs_20777 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21880 DeepMRMD:1;iRNA_m5C:0.999536712157815 21881 chr4 3184085 3184085 1 + T C COAD 3184095 + 3184075 3184115 41 TTATAGGTGTTGGAGATGTTCATTCTTGTCCTGCAGCAGTG TTATAGGTGTCGGAGATGTTCATTCTTGTCCTGCAGCAGTG < 41bp 1 0.0669426654413366 1 0.0802604258060455 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3184095 chr4:3184085 nonsynonymous SNV 0.984 3 11 hm5C_associated_SNPs_20778 0 0 1 0 1 Cytosol 1 0.500231644077657 1 0.999536711844686 hm5C_site_21881 DeepMRMD:1;iRNA_m5C:0.999536711844686 21882 chr2 71577133 71577133 1 + G A COAD 71577126 + 71577106 71577146 41 TAATTTCATCTGTAAGCCAGCAAGAGCGGATCCCACATGAA TAATTTCATCTGTAAGCCAGCAAGAGCAGATCCCACATGAA < 41bp 1 0.497354532291927 1 0.49371924996376 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71577126 chr2:71577133 nonsynonymous SNV 0.823 3 28 hm5C_associated_SNPs_20779 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21882 DeepMRMD:1;iRNA_m5C:0.999536712157815 21883 chr11 18380169 18380169 1 + G A COAD 18380158 + 18380138 18380178 41 GACATTTCTGGTCCTGCTTTCCTGTTAATACGCCATTCCTA GACATTTCTGGTCCTGCTTTCCTGTTAATACACCATTCCTA < 41bp 1 0.143813540063265 1 0.0982573628425598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GTF2H1 ENSG00000110768 CDS Human protein_coding chr11:18380158 chr11:18380169 synonymous SNV . 0 32 hm5C_associated_SNPs_20780 0 0 1 0 2 Cytosol 1 0.500231643995198 1 0.999536712009605 hm5C_site_21883 DeepMRMD:1;iRNA_m5C:0.999536712009605 21884 chr1 97771751 97771751 1 + C T COAD 97771744 - 97771724 97771764 41 TATTGTGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT TATTGTGAGCATCACAAGAGCTGCAAAGGAAGGTAAGAACT < 41bp 1 0.571359574365244 1 0.310385942459106 experiment 0.857280851269512 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYD ENSG00000188641 CDS Human protein_coding chr1:97771744 chr1:97771751 nonsynonymous SNV 0.999 4 14 hm5C_associated_SNPs_20781 1 0 0 0 1 cytosol 1 0.500231643920964 1 0.999536712158072 hm5C_site_21884 DeepMRMD:1;iRNA_m5C:0.999536712158072 not provided not provided 21885 chr1 164790823 164790823 1 + G T COAD 164790815 + 164790795 164790835 41 ATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG ATCAGCCAGACAGGAGGATACAGTGATGTACTCGCAGCCAG < 41bp 1 0.678763109735108 1 0.435832232236862 experiment 0.642473780529784 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790815 chr1:164790823 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_20783 0 0 1 0 1 Ribosome 1 0.500229080902972 1 0.999541838194057 hm5C_site_21885 DeepMRMD:1;iRNA_m5C:0.999541838194057 21886 chr14 35649922 35649922 1 + A T COAD 35649907 + 35649887 35649927 41 ATTTGAGAACTTCATAAAATCTCGTCCTCCTTTTGATGTTG ATTTGAGAACTTCATAAAATCTCGTCCTCCTTTTGTTGTTG < 41bp 1 0.504438423941485 1 0.169967621564865 experiment 0.991123152117031 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA0391 ENSG00000100890;ENSG00000258790 CDS Human other chr14:35649907 chr14:35649922 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_20784 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921103 1 0.999536712157794 hm5C_site_21886 DeepMRMD:1;iRNA_m5C:0.999536712157794 21887 chr6 26124576 26124576 1 + A G COAD 26124556 + 26124536 26124576 41 TTCCCGGTGGGCCGAGTGCACCGCCTGCTCCGTAAAGGCAA TTCCCGGTGGGCCGAGTGCACCGCCTGCTCCGTAAAGGCAG < 41bp 1 0.605215054478939 1 0.136146605014801 experiment 0.789569891042122 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AC ENSG00000180573 CDS Human protein_coding chr6:26124556 chr6:26124576 nonsynonymous SNV 0.864 2 41 hm5C_associated_SNPs_20785 0 0 1 0 0 Ribosome 1 0.50023164395804 1 0.99953671208392 hm5C_site_21887 DeepMRMD:1;iRNA_m5C:0.99953671208392 21888 chr12 22199377 22199377 1 + C T COAD 22199363 + 22199343 22199383 41 GGCCGAGGTGTGGAGAAGCCCCCGCACCTGGCAGCCCTAAT GGCCGAGGTGTGGAGAAGCCCCCGCACCTGGCAGTCCTAAT < 41bp 1 0.685165791481573 1 0.0887323021888733 experiment 0.629668417036853 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22199363 chr12:22199377 nonsynonymous SNV 0.957 4 35 hm5C_associated_SNPs_20786 0 0 1 0 0 Ribosome 1 0.500231643921086 1 0.999536712157828 hm5C_site_21888 DeepMRMD:1;iRNA_m5C:0.999536712157828 21889 chr7 5643529 5643529 1 + C T COAD 5643510 + 5643490 5643530 41 ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACCG ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACTG < 41bp 1 0.367117765765315 1 0.0687339305877686 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643510 chr7:5643529 nonsynonymous SNV 0.971 3 40 hm5C_associated_SNPs_20788 0 0 1 0 1 Ribosome 1 0.500211135574547 1 0.999577728850905 hm5C_site_21889 DeepMRMD:1;iRNA_m5C:0.999577728850905 21890 chr2 27302046 27302046 1 + C T COAD 27302048 + 27302028 27302068 41 ACACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAG ACACAGGTTCCAGTGGGGTCCTCAGCCCCGGGGGGCCCCAG < 41bp 1 0.537454286839729 1 0.292233288288116 experiment 0.925091426320541 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302048 chr2:27302046 nonsynonymous SNV 0.071 0 19 hm5C_associated_SNPs_20789 0 0 1 0 1 Cytosol 1 0.500231644318632 1 0.999536711362736 hm5C_site_21890 DeepMRMD:1;iRNA_m5C:0.999536711362736 21891 chr2 27302046 27302046 1 + C T COAD 27302063 + 27302043 27302083 41 GGGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCC GGGTCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCC < 41bp 1 0.367635368186749 1 0.0798784196376801 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302063 chr2:27302046 nonsynonymous SNV 0.071 0 4 hm5C_associated_SNPs_20790 0 0 1 0 1 Cytosol 1 0.500231643922027 1 0.999536712155946 hm5C_site_21891 DeepMRMD:1;iRNA_m5C:0.999536712155946 21892 chr2 27302046 27302046 1 + C T COAD 27302064 + 27302044 27302084 41 GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC GGTCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC < 41bp 1 0.36869609048386 1 0.599306583404541 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302064 chr2:27302046 nonsynonymous SNV 0.071 0 3 hm5C_associated_SNPs_20791 0 0 1 0 1 Cytosol 1 0.500231643921092 0.801386833190918 0.999536712157815 hm5C_site_21892 DeepMRMD:0.801386833190918;iRNA_m5C:0.999536712157815 21893 chr2 27302046 27302046 1 + C T COAD 27302065 + 27302045 27302085 41 GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG GTCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG < 41bp 1 0.628453120729614 1 0.738491177558899 experiment 0.743093758540771 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302065 chr2:27302046 nonsynonymous SNV 0.071 0 2 hm5C_associated_SNPs_20792 0 0 1 0 1 Cytosol 1 0.5002316439211 0.523017644882202 0.999536712157801 hm5C_site_21893 DeepMRMD:0.523017644882202;iRNA_m5C:0.999536712157801 21894 chr2 27302046 27302046 1 + C T COAD 27302066 + 27302046 27302086 41 CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG TCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG < 41bp 1 0.635599175820158 1 0.808544814586639 experiment 0.728801648359684 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302066 chr2:27302046 nonsynonymous SNV 0.071 0 1 hm5C_associated_SNPs_20793 0 0 1 0 1 Cytosol 1 0.500231643921092 0.382910370826722 0.999536712157815 hm5C_site_21894 DeepMRMD:0.382910370826722;iRNA_m5C:0.999536712157815 21895 chr1 203821349 203821349 1 + T C COAD 203821365 + 203821345 203821385 41 AGCATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAA AGCACGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAA < 41bp 1 0.486116702139321 1 0.261055171489716 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203821365 chr1:203821349 nonsynonymous SNV 0.095 0 5 hm5C_associated_SNPs_20794 0 0 0 0 1 Nucleus 1 0.500231633854507 1 0.999536732290986 hm5C_site_21895 DeepMRMD:1;iRNA_m5C:0.999536732290986 21896 chr20 1902317 1902317 1 + A G COAD 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACGTCACCTTGCAGGGGGGCCCTCTTCGTGGGACTGCCAAC < 41bp 1 0.0552360461440926 1 0.0191630125045776 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902317 nonsynonymous SNV 0.020 0 19 hm5C_associated_SNPs_20795 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21896 DeepMRMD:1;iRNA_m5C:0.999536712157815 21897 chr14 102901117 102901117 1 + A G COAD 102901100 + 102901080 102901120 41 CCCCCTCCTGAACTCACTCACTGTGCCTTCCAGCCTCAGCT CCCCCTCCTGAACTCACTCACTGTGCCTTCCAGCCTCGGCT < 41bp 1 0.148234934722569 1 0.200301617383957 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102901100 chr14:102901117 nonsynonymous SNV 0.940 0 38 hm5C_associated_SNPs_20796 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21897 DeepMRMD:1;iRNA_m5C:0.999536712157815 21898 chr5 54720592 54720592 1 + T G COAD 54720581 + 54720561 54720601 41 CAAGAGAGATATTGTGTTTGCTGCCAGCCTCTACTTGTAGA CAAGAGAGATATTGTGTTTGCTGCCAGCCTCGACTTGTAGA < 41bp 1 0.273415766530839 1 0.124786466360092 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54720581 chr5:54720592 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_20798 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_21898 DeepMRMD:1;iRNA_m5C:0.999536712157816 21899 chr11 61404335 61404335 1 + C T COAD 61404327 + 61404307 61404347 41 GGTGCTGATGGGCAAGAACGCCATGACGCGCAAGGCCATCC GGTGCTGATGGGCAAGAACGCCATGACGTGCAAGGCCATCC < 41bp 1 0.365592534005686 1 0.374937921762466 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404327 chr11:61404335 . . 0 29 hm5C_associated_SNPs_20800 0 0 0 0 0 unknown 1 0.500232632894037 1 0.999534734211927 hm5C_site_21899 DeepMRMD:1;iRNA_m5C:0.999534734211927 21900 chr6 109763755 109763755 1 + G A COAD 109763767 + 109763747 109763787 41 TCCATGCCGAATACAATCGACAGAAGGACATCTACCTAGCA TCCATGCCAAATACAATCGACAGAAGGACATCTACCTAGCA < 41bp 1 0.447559828188561 1 0.327658116817474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763767 chr6:109763755 nonsynonymous SNV 0.996 4 9 hm5C_associated_SNPs_20802 0 0 0 0 2 chromatin 1 0.500219262893426 1 0.999561474213149 hm5C_site_21900 DeepMRMD:1;iRNA_m5C:0.999561474213149 21901 chr4 8284238 8284238 1 + G A COAD 8284228 + 8284208 8284248 41 GCTGACGTGGTGGAGAAGATCGCACCAGCCGTGGTCCACAT GCTGACGTGGTGGAGAAGATCGCACCAGCCATGGTCCACAT < 41bp 1 0.645750693901244 1 0.185940802097321 experiment 0.708498612197512 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8284228 chr4:8284238 nonsynonymous SNV 0.989 5 31 hm5C_associated_SNPs_20803 0 0 0 0 2 exosome 1 0.50031960679653 1 0.999360786406939 hm5C_site_21901 DeepMRMD:1;iRNA_m5C:0.999360786406939 21902 chr16 14403167 14403167 1 + G A COAD 14403172 + 14403152 14403192 41 AAATGAGGGACTTTTGGGGGCAGATGTGTTTCCATTCCACT AAATGAGGGACTTTTAGGGGCAGATGTGTTTCCATTCCACT < 41bp 1 0.339286552138706 1 0.380057960748672 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR365A ENSG00000199130 ncRNA_exonic Human miRNA chr16:14403172 chr16:14403167 . . 0 16 hm5C_associated_SNPs_20804 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_21902 DeepMRMD:1;iRNA_m5C:0.999536712157815 21903 chr8 145727066 145727066 1 + T C COAD 145727063 + 145727043 145727083 41 CCACGACAAGGCCCACCACACCCTGGCTGACCTGAAGCGCC CCACGACAAGGCCCACCACACCCCGGCTGACCTGAAGCGCC < 41bp 1 0.408505557841725 1 0.400216639041901 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145727063 chr8:145727066 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_20805 0 0 1 0 0 Ribosome 1 0.500231670547529 1 0.999536658904942 hm5C_site_21903 DeepMRMD:1;iRNA_m5C:0.999536658904942 21904 chr7 142459652 142459652 1 + C T COAD 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCATAACATCGAAGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.538418094486882 1 0.413948088884354 experiment 0.923163811026236 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459652 synonymous SNV . 0 9 hm5C_associated_SNPs_20810 0 0 0 0 1 Cytosol 1 0.500231627208491 1 0.999536745583019 hm5C_site_21904 DeepMRMD:1;iRNA_m5C:0.999536745583019 21905 chr15 29385301 29385301 1 + G T COAD 29385286 + 29385266 29385306 41 GCCCTCCTTCAGTTCCAGGGCCCTGCGAACCAGAAGACCTC GCCCTCCTTCAGTTCCAGGGCCCTGCGAACCAGAATACCTC < 41bp 1 0.0609837501263555 1 0.272961795330048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APBA2 ENSG00000034053 CDS Human protein_coding chr15:29385286 chr15:29385301 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_20811 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_21905 DeepMRMD:1;iRNA_m5C:0.999536712157815 21906 chr12 56346682 56346682 1 + C T COAD 56346679 + 56346659 56346699 41 TTAGGTGCTACAGCTAAAGTCATCACCGACCCTGATATCCT TTAGGTGCTACAGCTAAAGTCATTACCGACCCTGATATCCT < 41bp 1 0.225035617365742 1 0.0491532683372498 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56346679 chr12:56346682 synonymous SNV . 0 24 hm5C_associated_SNPs_20812 0 0 0 0 0 Cytosol 1 0.500231643921405 1 0.99953671215719 hm5C_site_21906 DeepMRMD:1;iRNA_m5C:0.99953671215719 21907 chr19 7620161 7620161 1 + C T COAD 7620146 + 7620126 7620166 41 CCATCCCAGCATGAGCTCTACGAGAAGGTTTTCTCCAGGCG CCATCCCAGCATGAGCTCTACGAGAAGGTTTTCTCTAGGCG < 41bp 1 0.625596465340382 1 0.41898500919342 experiment 0.748807069319237 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620146 chr19:7620161 synonymous SNV . 0 36 hm5C_associated_SNPs_20813 0 0 1 0 2 Ribosome 1 0.500231642899993 1 0.999536714200013 hm5C_site_21907 DeepMRMD:1;iRNA_m5C:0.999536714200013 21908 chr3 47041680 47041680 1 + G T COAD 47041673 + 47041653 47041693 41 CCTTTGACCTGGGCCTGGAACGGTCTAGTGTAGGATCAGGC CCTTTGACCTGGGCCTGGAACGGTCTATTGTAGGATCAGGC < 41bp 1 0.100814596128436 1 0.761211454868317 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041673 chr3:47041680 nonsynonymous SNV 0.668 2 28 hm5C_associated_SNPs_20814 0 0 1 0 0 Nucleus 1 0.500231643921092 0.477577090263366 0.999536712157815 hm5C_site_21908 DeepMRMD:0.477577090263366;iRNA_m5C:0.999536712157815 21909 chr19 11114031 11114031 1 + G A COAD 11114029 + 11114009 11114049 41 TTTCTAGGTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAA TTTCTAGGTATGAAGTAGCTCCAAGGTCTGATAGTGAAGAA < 41bp 1 0.161363649126119 1 0.393238991498947 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114029 chr19:11114031 synonymous SNV . 0 23 hm5C_associated_SNPs_20815 0 0 1 0 2 Nucleus 1 0.500231650737417 1 0.999536698525165 hm5C_site_21909 DeepMRMD:1;iRNA_m5C:0.999536698525165 21910 chr19 11114031 11114031 1 + G A COAD 11114036 + 11114016 11114056 41 GTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAAAGTGGCT GTATGAAGTAGCTCCAAGGTCTGATAGTGAAGAAAGTGGCT < 41bp 1 0.132548447778968 1 0.114153295755386 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114036 chr19:11114031 synonymous SNV . 0 16 hm5C_associated_SNPs_20816 0 0 1 0 2 Nucleus 1 0.500231753057289 1 0.999536493885422 hm5C_site_21910 DeepMRMD:1;iRNA_m5C:0.999536493885422 21911 chr1 984306 984306 1 + C A COAD 984297 + 984277 984317 41 GCCGCTCCTTCCTGGCCTTCCCCACTCTCCGCGCCTACCAC GCCGCTCCTTCCTGGCCTTCCCCACTCTCAGCGCCTACCAC < 41bp 1 0.106216134509276 1 0.0437875092029572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984297 chr1:984306 nonsynonymous SNV 0.107 0 30 hm5C_associated_SNPs_20817 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643744496 1 0.999536712511008 hm5C_site_21911 DeepMRMD:1;iRNA_m5C:0.999536712511008 21912 chr1 183094636 183094636 1 + G T COAD 183094656 + 183094636 183094676 41 GCTTGTGACCCTGGATTCTACAATCTGCAGAGTGGGCAAGG TCTTGTGACCCTGGATTCTACAATCTGCAGAGTGGGCAAGG < 41bp 1 0.147850609510086 1 0.162043899297714 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183094656 chr1:183094636 nonsynonymous SNV 0.130 0 1 hm5C_associated_SNPs_20818 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21912 DeepMRMD:1;iRNA_m5C:0.999536712157815 21913 chr6 131904598 131904598 1 + G A COAD 131904583 + 131904563 131904603 41 GCACACCAGTCGTGGGAGGTCTGACATACAGAGAAGGTCTC GCACACCAGTCGTGGGAGGTCTGACATACAGAGAAAGTCTC < 41bp 1 0.498917519464332 1 0.133423775434494 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131904583 chr6:131904598 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_20819 0 0 1 0 1 exosome 1 0.500226807081468 1 0.999546385837064 hm5C_site_21913 DeepMRMD:1;iRNA_m5C:0.999546385837064 21914 chr6 36569545 36569545 1 + G A COAD 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCATCCCGATCCTTCTCTAGGTCTCGTAGGT < 41bp 1 0.018451802608114 1 0.0380212962627411 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569545 synonymous SNV . 0 13 hm5C_associated_SNPs_20820 0 0 1 0 2 Ribosome 1 0.50023192659035 1 0.999536146819301 hm5C_site_21914 DeepMRMD:1;iRNA_m5C:0.999536146819301 21915 chr2 27263669 27263669 1 + C T COAD 27263686 + 27263666 27263706 41 TTTCTTGGACTGGGCACTTGCCCTGATATCCCAGCAGTAGG TTTTTTGGACTGGGCACTTGCCCTGATATCCCAGCAGTAGG < 41bp 1 0.26943631113814 1 0.0518357157707214 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27263686 chr2:27263669 synonymous SNV . 0 4 hm5C_associated_SNPs_20821 0 0 1 0 1 Ribosome 1 0.500231645085344 1 0.999536709829312 hm5C_site_21915 DeepMRMD:1;iRNA_m5C:0.999536709829312 21916 chr7 129950655 129950655 1 + C T COAD 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCTGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG < 41bp 1 0.567868892498094 1 0.0762216746807098 experiment 0.864262215003812 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950655 synonymous SNV . 0 5 hm5C_associated_SNPs_20822 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643930388 1 0.999536712139224 hm5C_site_21916 DeepMRMD:1;iRNA_m5C:0.999536712139224 21917 chr7 129950655 129950655 1 + C T COAD 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCTGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG < 41bp 1 0.0977425317553244 1 0.0763348937034607 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950655 synonymous SNV . 0 4 hm5C_associated_SNPs_20823 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164393216 1 0.99953671213568 hm5C_site_21917 DeepMRMD:1;iRNA_m5C:0.99953671213568 21918 chr17 37360859 37360859 1 + G A COAD 37360846 + 37360826 37360866 41 CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCA CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAAATCATCA < 41bp 1 0.29325025674819 1 0.342692792415619 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360846 chr17:37360859 synonymous SNV . 0 34 hm5C_associated_SNPs_20824 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_21918 DeepMRMD:1;iRNA_m5C:0.999536712157816 21919 chr17 37360859 37360859 1 + G A COAD 37360862 + 37360842 37360882 41 CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA CAGGCCAAGAAGGAGGAAATCATCAAGACTTTATCCAAGGA < 41bp 1 0.619029867034412 1 0.174684196710587 experiment 0.761940265931175 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360862 chr17:37360859 synonymous SNV . 0 18 hm5C_associated_SNPs_20825 0 0 1 0 1 chromatin 1 0.500231642688256 1 0.999536714623487 hm5C_site_21919 DeepMRMD:1;iRNA_m5C:0.999536714623487 21920 chr17 37360859 37360859 1 + G A COAD 37360876 + 37360856 37360896 41 GGAGATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGA GGAAATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGA < 41bp 1 0.497510270092984 1 0.817286252975464 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360876 chr17:37360859 synonymous SNV . 0 4 hm5C_associated_SNPs_20826 0 0 1 0 1 chromatin 1 0.500231643921092 0.365427494049072 0.999536712157815 hm5C_site_21920 DeepMRMD:0.365427494049072;iRNA_m5C:0.999536712157815 21921 chr16 2011256 2011256 1 + G C COAD 2011268 + 2011248 2011288 41 CATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG CATCATGTCCATGTATGAAGCCGAAATGCAGTGGAAGAGGG < 41bp 1 0.554927005318693 1 0.36777126789093 experiment 0.890145989362614 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011268 chr16:2011256 nonsynonymous SNV 0.060 4 9 hm5C_associated_SNPs_20827 0 0 1 0 1 Ribosome 1 0.500231644085948 1 0.999536711828104 hm5C_site_21921 DeepMRMD:1;iRNA_m5C:0.999536711828104 21922 chr16 2011256 2011256 1 + G C COAD 2011269 + 2011249 2011289 41 ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA ATCATGTCCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA < 41bp 1 0.538543669519361 1 0.470113694667816 experiment 0.922912660961277 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011269 chr16:2011256 nonsynonymous SNV 0.060 4 8 hm5C_associated_SNPs_20828 0 0 1 0 1 Ribosome 1 0.5002316440648 1 0.999536711870401 hm5C_site_21922 DeepMRMD:1;iRNA_m5C:0.999536711870401 21923 chr16 2011256 2011256 1 + G C COAD 2011276 + 2011256 2011296 41 GCATGTATGAAGCCGAAATGCAGTGGAAGAGGGACTAGTAC CCATGTATGAAGCCGAAATGCAGTGGAAGAGGGACTAGTAC < 41bp 1 0.689180479157338 1 0.590249300003052 experiment 0.621639041685323 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011276 chr16:2011256 nonsynonymous SNV 0.060 4 1 hm5C_associated_SNPs_20829 0 0 1 0 1 Ribosome 1 0.500231643920191 0.819501399993896 0.999536712159617 hm5C_site_21923 DeepMRMD:0.819501399993896;iRNA_m5C:0.999536712159617 21924 chr10 60580132 60580132 1 + G A COAD 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCAATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT < 41bp 1 0.0843026967202713 1 0.0954337120056152 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580132 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_20830 0 0 1 0 2 nucleus 1 0.500210947971873 1 0.999578104056255 hm5C_site_21924 DeepMRMD:1;iRNA_m5C:0.999578104056255 21925 chr8 37555977 37555977 1 + C A COAD 37555990 + 37555970 37556010 41 TCTGCACCTCCCCCCGCCCGCCGCCCCCGGCAGCCCCGGGT TCTGCACATCCCCCCGCCCGCCGCCCCCGGCAGCCCCGGGT < 41bp 1 0.188814999967582 1 0.352629005908966 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF703 ENSG00000183779 CDS Human protein_coding chr8:37555990 chr8:37555977 nonsynonymous SNV 0.994 1 8 hm5C_associated_SNPs_20831 0 0 1 0 0 exosome 1 0.500231643926916 1 0.999536712146167 hm5C_site_21925 DeepMRMD:1;iRNA_m5C:0.999536712146167 21926 chr17 76399752 76399752 1 + C T COAD 76399746 + 76399726 76399766 41 ATGCTGCATGCCCAGACCTTCCACAGCAACTCTCTTTTGAC ATGCTGCATGCCCAGACCTTCCACAGTAACTCTCTTTTGAC < 41bp 1 0.419976801654738 1 0.0604789555072784 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PGS1 ENSG00000087157 CDS Human protein_coding chr17:76399746 chr17:76399752 synonymous SNV . 0 27 hm5C_associated_SNPs_20832 0 0 1 0 0 chromatin 1 0.500231692041726 1 0.999536615916548 hm5C_site_21926 DeepMRMD:1;iRNA_m5C:0.999536615916548 21927 chr9 138678124 138678124 1 + G T COAD 138678113 + 138678093 138678133 41 GGGGCCCTGGGGCTCCCGCGCTGGCACCGGAGGCAGCTCCC GGGGCCCTGGGGCTCCCGCGCTGGCACCGGATGCAGCTCCC < 41bp 1 0.650342512714267 1 0.145150691270828 experiment 0.699314974571466 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138678113 chr9:138678124 nonsynonymous SNV 0.079 0 32 hm5C_associated_SNPs_20833 0 0 0 0 1 exosome 1 0.500231650138994 1 0.999536699722013 hm5C_site_21927 DeepMRMD:1;iRNA_m5C:0.999536699722013 21928 chr5 61669589 61669589 1 + T C COAD 61669583 + 61669563 61669603 41 ATAATGCACCATCCACCAAACCAGATTGATGACTTAGAGAC ATAATGCACCATCCACCAAACCAGATCGATGACTTAGAGAC < 41bp 1 0.61615523296855 1 0.237308740615845 experiment 0.7676895340629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF2A ENSG00000068796 CDS Human protein_coding chr5:61669583 chr5:61669589 synonymous SNV . 0 27 hm5C_associated_SNPs_20834 0 0 1 0 1 Nucleus 1 0.500231643918092 1 0.999536712163816 hm5C_site_21928 DeepMRMD:1;iRNA_m5C:0.999536712163816 21929 chr12 52636889 52636889 1 + C A COAD 52636873 + 52636853 52636893 41 AATGAGATTTCAGAGATGAACCGGGCCATCCAGAGGCTGCA AATGAGATTTCAGAGATGAACCGGGCCATCCAGAGGATGCA < 41bp 1 0.347024362155308 1 0.223008841276169 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636873 chr12:52636889 nonsynonymous SNV 0.999 3 37 hm5C_associated_SNPs_20835 0 0 1 0 2 Cytosol 1 0.500226472442388 1 0.999547055115223 hm5C_site_21929 DeepMRMD:1;iRNA_m5C:0.999547055115223 21930 chr12 52636889 52636889 1 + C A COAD 52636909 + 52636889 52636929 41 CTGCAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACA ATGCAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACA < 41bp 1 0.381510602763357 1 0.0664180815219879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636909 chr12:52636889 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_20836 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21930 DeepMRMD:1;iRNA_m5C:0.999536712157815 21931 chr17 1946247 1946247 1 + C T COAD 1946262 + 1946242 1946282 41 GGACACTGACAAAGTCATCCCCTCTCAGGAGAGTGTGCAAC GGACATTGACAAAGTCATCCCCTCTCAGGAGAGTGTGCAAC < 41bp 1 0.100742170593608 1 0.0282630920410156 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OVCA2 ENSG00000262664 CDS Human protein_coding chr17:1946262 chr17:1946247 nonsynonymous SNV 0.996 1 6 hm5C_associated_SNPs_20837 0 0 1 1 0 exosome 1 0.500222389143414 1 0.999555221713172 hm5C_site_21931 DeepMRMD:1;iRNA_m5C:0.999555221713172 21932 chr11 66034015 66034015 1 + G A COAD 66034001 + 66033981 66034021 41 TGGGCACTGGGCAGCTGCGGCCGGGGCTGCATGCGTGCTGC TGGGCACTGGGCAGCTGCGGCCGGGGCTGCATGCATGCTGC < 41bp 1 0.696992042699982 1 0.734932541847229 experiment 0.606015914600035 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC2 ENSG00000174996 CDS Human protein_coding chr11:66034001 chr11:66034015 synonymous SNV . 0 35 hm5C_associated_SNPs_20838 0 0 1 0 0 Ribosome 1 0.500232358562914 0.530134916305542 0.999535282874172 hm5C_site_21932 DeepMRMD:0.530134916305542;iRNA_m5C:0.999535282874172 21933 chr3 62189599 62189599 1 + C T COAD 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGATAGCAGA < 41bp 1 0.103471706007246 1 0.198648363351822 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189599 synonymous SNV . 0 35 hm5C_associated_SNPs_20839 0 0 0 0 1 Ribosome 1 0.500231643874047 1 0.999536712251906 hm5C_site_21933 DeepMRMD:1;iRNA_m5C:0.999536712251906 21934 chr11 64137808 64137808 1 + G A COAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCCGCGAGGGGCGCTTCTCCCTTGACAGGGAGGCCTG < 41bp 1 0.513819939744828 1 0.632405996322632 experiment 0.972360120510345 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137808 nonsynonymous SNV 0.997 3 31 hm5C_associated_SNPs_20840 0 0 0 0 2 chromatin 1 0.500231643921092 0.735188007354736 0.999536712157815 hm5C_site_21934 DeepMRMD:0.735188007354736;iRNA_m5C:0.999536712157815 21935 chr19 13930222 13930222 1 + T C COAD 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CCCACGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT < 41bp 1 0.133125980932731 1 0.0529041588306427 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930222 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_20841 0 0 1 0 2 chromatin 1 0.500231643921095 1 0.999536712157809 hm5C_site_21935 DeepMRMD:1;iRNA_m5C:0.999536712157809 21936 chr20 23350274 23350274 1 + G A COAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACACCCTCCAGCGCCACCGCCGCATCCA < 41bp 1 0.460787591352086 1 0.414491176605225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350274 nonsynonymous SNV 0.977 3 16 hm5C_associated_SNPs_20842 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21936 DeepMRMD:1;iRNA_m5C:0.999536712157815 21937 chr19 48832635 48832635 1 + A G COAD 48832653 + 48832633 48832673 41 TCATGGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTCATC TCGTGGTGCTCTCCCTCATTCTCTGCTGTCTCTCCTTCATC < 41bp 1 0.5051507559903 1 0.0742425620555878 experiment 0.9896984880194 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48832653 chr19:48832635 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_20843 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_21937 DeepMRMD:1;iRNA_m5C:0.999536712157815 21938 chr10 12162803 12162803 1 + G A COAD 12162801 + 12162781 12162821 41 TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC TATAGCTCCGTCTGGTGGGCCGACCCCCTTTGCCAGTACCC < 41bp 1 0.09991564698927 1 0.667125582695007 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12162801 chr10:12162803 synonymous SNV . 0 23 hm5C_associated_SNPs_20845 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.665748834609986 0.999536712157815 hm5C_site_21938 DeepMRMD:0.665748834609986;iRNA_m5C:0.999536712157815 21939 chr14 56079169 56079169 1 + G A COAD 56079153 + 56079133 56079173 41 CCTGTGCTTGAAGAGCAGGTCATCAAAGAAAGTGACGCATC CCTGTGCTTGAAGAGCAGGTCATCAAAGAAAGTGACACATC < 41bp 1 0.570746286176644 1 0.0748054385185242 experiment 0.858507427646712 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56079153 chr14:56079169 nonsynonymous SNV 0.291 1 37 hm5C_associated_SNPs_20846 0 0 1 0 0 Endoplasmic reticulum 1 0.500231499954002 1 0.999537000091997 hm5C_site_21939 DeepMRMD:1;iRNA_m5C:0.999537000091997 21940 chr16 12618656 12618656 1 + G T COAD 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCCGAGTTCGCTGCCATCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.224746656337702 1 0.467459440231323 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618656 nonsynonymous SNV 0.573 0 18 hm5C_associated_SNPs_20847 0 0 0 0 2 Nucleus 1 0.500231643901264 1 0.999536712197472 hm5C_site_21940 DeepMRMD:1;iRNA_m5C:0.999536712197472 21941 chr6 30692127 30692127 1 + G A COAD 30692122 + 30692102 30692142 41 GTATCAGCAGTACCAGGATGCCACCGCAGAAGAGGAGGAGG GTATCAGCAGTACCAGGATGCCACCACAGAAGAGGAGGAGG < 41bp 1 0.0786987528985895 1 0.481084316968918 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TUBB ENSG00000196230 CDS Human protein_coding chr6:30692122 chr6:30692127 nonsynonymous SNV 0.936 1 26 hm5C_associated_SNPs_20848 0 0 1 0 0 Cytosol 1 0.500231643920997 1 0.999536712158006 hm5C_site_21941 DeepMRMD:1;iRNA_m5C:0.999536712158006 21942 chr6 30692127 30692127 1 + G A COAD 30692125 + 30692105 30692145 41 TCAGCAGTACCAGGATGCCACCGCAGAAGAGGAGGAGGATT TCAGCAGTACCAGGATGCCACCACAGAAGAGGAGGAGGATT < 41bp 1 0.374880860484593 1 0.0850978195667267 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TUBB ENSG00000196230 CDS Human protein_coding chr6:30692125 chr6:30692127 nonsynonymous SNV 0.936 1 23 hm5C_associated_SNPs_20849 0 0 1 0 0 Cytosol 1 0.500231645196126 1 0.999536709607748 hm5C_site_21942 DeepMRMD:1;iRNA_m5C:0.999536709607748 21943 chr6 30692127 30692127 1 + G A COAD 30692126 + 30692106 30692146 41 CAGCAGTACCAGGATGCCACCGCAGAAGAGGAGGAGGATTT CAGCAGTACCAGGATGCCACCACAGAAGAGGAGGAGGATTT < 41bp 1 0.360133994082796 1 0.410218894481659 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TUBB ENSG00000196230 CDS Human protein_coding chr6:30692126 chr6:30692127 nonsynonymous SNV 0.936 1 22 hm5C_associated_SNPs_20850 0 0 1 0 0 Cytosol 1 0.500231643921281 1 0.999536712157438 hm5C_site_21943 DeepMRMD:1;iRNA_m5C:0.999536712157438 21944 chr6 30692127 30692127 1 + G A COAD 30692147 + 30692127 30692167 41 GCAGAAGAGGAGGAGGATTTCGGTGAGGAGGCCGAAGAGGA ACAGAAGAGGAGGAGGATTTCGGTGAGGAGGCCGAAGAGGA < 41bp 1 0.641159441418781 1 0.707365274429321 experiment 0.717681117162438 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TUBB ENSG00000196230 CDS Human protein_coding chr6:30692147 chr6:30692127 nonsynonymous SNV 0.936 1 1 hm5C_associated_SNPs_20851 0 0 1 0 0 Cytosol 1 0.500231643921093 0.585269451141358 0.999536712157815 hm5C_site_21944 DeepMRMD:0.585269451141358;iRNA_m5C:0.999536712157815 21945 chr19 7682688 7682688 1 + G A COAD 7682691 + 7682671 7682711 41 ATCCTCTTTCGCGACTCGAGCTGCCAGTTCCGGGCGCTCTA ATCCTCTTTCGCGACTCAAGCTGCCAGTTCCGGGCGCTCTA < 41bp 1 0.318858908801586 1 0.152687251567841 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682691 chr19:7682688 synonymous SNV . 0 18 hm5C_associated_SNPs_20853 0 0 0 0 1 nucleus 1 0.500231643921123 1 0.999536712157754 hm5C_site_21945 DeepMRMD:1;iRNA_m5C:0.999536712157754 21946 chr19 41711920 41711920 1 + C T COAD 41711910 + 41711890 41711930 41 TCCATCCTGCATGACCCCAACATCTTCAAGCACCCAGAAGA TCCATCCTGCATGACCCCAACATCTTCAAGTACCCAGAAGA < 41bp 1 0.0811595622068732 1 0.126604735851288 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41711910 chr19:41711920 nonsynonymous SNV 0.014 0 31 hm5C_associated_SNPs_20854 0 0 0 0 2 Ribosome 1 0.500231643975851 1 0.999536712048297 hm5C_site_21946 DeepMRMD:1;iRNA_m5C:0.999536712048297 21947 chr16 675981 675981 1 + G A COAD 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCCCACGCGTACGCAGAG < 41bp 1 0.53934188047409 1 0.836148977279663 experiment 0.92131623905182 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675981 nonsynonymous SNV 0.007 3 28 hm5C_associated_SNPs_20855 0 0 0 0 2 Ribosome 1 0.500231643911713 0.327702045440674 0.999536712176574 hm5C_site_21947 DeepMRMD:0.327702045440674;iRNA_m5C:0.999536712176574 21948 chr1 200776561 200776561 1 + A G COAD 200776560 + 200776540 200776580 41 GCTTATACTGTAGAAATGGTCAGTATAGAAAAAGTAATTGC GCTTATACTGTAGAAATGGTCGGTATAGAAAAAGTAATTGC < 41bp 1 0.626754729006786 1 0.275854051113129 experiment 0.746490541986428 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200776560 chr1:200776561 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_20856 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_21948 DeepMRMD:1;iRNA_m5C:0.999536712157815 21949 chr21 46931094 46931094 1 + C T COAD 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCATGCATCTTCTCCTTTGACGGCAAGGACGTCC < 41bp 1 0.0570109599313957 1 0.136313140392303 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931094 nonsynonymous SNV 0.451 4 11 hm5C_associated_SNPs_20857 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21949 DeepMRMD:1;iRNA_m5C:0.999536712157815 21950 chr21 46931094 46931094 1 + C T COAD 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCATGCATCTTCTCCTTTGACGGCAAGGACGTCCT < 41bp 1 0.0718554087788708 1 0.0528660118579865 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931094 nonsynonymous SNV 0.451 4 10 hm5C_associated_SNPs_20858 0 0 1 0 2 Nucleus 1 0.500231646947265 1 0.999536706105471 hm5C_site_21950 DeepMRMD:1;iRNA_m5C:0.999536706105471 21951 chr18 13056495 13056495 1 + G T COAD 13056496 + 13056476 13056516 41 ATCCAGCTGTTGCAGGAGAGCCTGTGCAGAACTCTGTGGCT ATCCAGCTGTTGCAGGAGATCCTGTGCAGAACTCTGTGGCT < 41bp 1 0.189874812407931 1 0.429507553577423 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056496 chr18:13056495 nonsynonymous SNV 0.656 0 20 hm5C_associated_SNPs_20859 0 0 1 0 0 Nucleus 1 0.500226051854857 1 0.999547896290287 hm5C_site_21951 DeepMRMD:1;iRNA_m5C:0.999547896290287 21952 chr19 32973074 32973074 1 + C T COAD 32973083 + 32973063 32973103 41 AACCTGCCTCCCTACGTGGCCTACTTCACCAGAGTGTTCCA AACCTGCCTCCTTACGTGGCCTACTTCACCAGAGTGTTCCA < 41bp 1 0.187783901293585 1 0.138640701770782 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32973083 chr19:32973074 synonymous SNV . 0 12 hm5C_associated_SNPs_20860 0 0 1 0 1 cytosol 1 0.500231643921091 1 0.999536712157819 hm5C_site_21952 DeepMRMD:1;iRNA_m5C:0.999536712157819 21953 chr7 45688317 45688317 1 + G A COAD 45688321 + 45688301 45688341 41 GGACTGCTACTACTGCGTGTCGGGCCTCACCCAGCCCAAGA GGACTGCTACTACTGCATGTCGGGCCTCACCCAGCCCAAGA < 41bp 1 0.505019283456155 1 0.785029768943787 experiment 0.98996143308769 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45688321 chr7:45688317 nonsynonymous SNV 0.625 5 17 hm5C_associated_SNPs_20861 0 0 1 0 2 Nucleus 1 0.500231645845219 0.429940462112426 0.999536708309561 hm5C_site_21953 DeepMRMD:0.429940462112426;iRNA_m5C:0.999536708309561 21954 chr13 76382228 76382228 1 + T C COAD 76382234 + 76382214 76382254 41 GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCTG GGAACTACCGTGCCCCCCATCAGTTTCACCCCTGGCCCCTG < 41bp 1 0.278523966746626 1 0.842804074287415 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76382234 chr13:76382228 synonymous SNV . 0 15 hm5C_associated_SNPs_20863 0 0 0 0 0 Cytosol 1 0.500231643921092 0.31439185142517 0.999536712157815 hm5C_site_21954 DeepMRMD:0.31439185142517;iRNA_m5C:0.999536712157815 21955 chr14 64596886 64596886 1 + G T COAD 64596874 + 64596854 64596894 41 TGTTGCAAGGCATGGTGGAACTGGTGAAGATTGGGAAGGAA TGTTGCAAGGCATGGTGGAACTGGTGAAGATTTGGAAGGAA < 41bp 1 0.259581581517001 1 0.352611154317856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64596874 chr14:64596886 nonsynonymous SNV 0.912 4 33 hm5C_associated_SNPs_20864 0 0 1 0 1 Nucleus 1 0.500231643986804 1 0.999536712026391 hm5C_site_21955 DeepMRMD:1;iRNA_m5C:0.999536712026391 21956 chr16 30773899 30773899 1 + C T COAD 30773908 + 30773888 30773928 41 CGCGCCGCCGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAA CGCGCCGCCGGTGACGGGGGCTCAGGGCCCCCGGAAAAGAA < 41bp 1 0.347585894933465 1 0.450242012739182 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773908 chr16:30773899 synonymous SNV . 0 12 hm5C_associated_SNPs_20865 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21956 DeepMRMD:1;iRNA_m5C:0.999536712157815 21957 chr16 30773899 30773899 1 + C T COAD 30773915 + 30773895 30773935 41 CCGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGT CCGGTGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGT < 41bp 1 0.107070019014939 1 0.299264460802078 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773915 chr16:30773899 synonymous SNV . 0 5 hm5C_associated_SNPs_20866 0 0 1 0 1 Ribosome 1 0.500231643920526 1 0.999536712158947 hm5C_site_21957 DeepMRMD:1;iRNA_m5C:0.999536712158947 21958 chr16 30773899 30773899 1 + C T COAD 30773916 + 30773896 30773936 41 CGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTC CGGTGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTC < 41bp 1 0.356197985339558 1 0.479425042867661 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773916 chr16:30773899 synonymous SNV . 0 4 hm5C_associated_SNPs_20867 0 0 1 0 1 Ribosome 1 0.500231643948405 1 0.99953671210319 hm5C_site_21958 DeepMRMD:1;iRNA_m5C:0.99953671210319 21959 chr16 30773899 30773899 1 + C T COAD 30773917 + 30773897 30773937 41 GGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTCG GGTGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTCG < 41bp 1 0.601164452751593 1 0.736515164375305 experiment 0.797671094496814 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773917 chr16:30773899 synonymous SNV . 0 3 hm5C_associated_SNPs_20868 0 0 1 0 1 Ribosome 1 0.500231643920341 0.52696967124939 0.999536712159318 hm5C_site_21959 DeepMRMD:0.52696967124939;iRNA_m5C:0.999536712159318 21960 chr16 30773899 30773899 1 + C T COAD 30773918 + 30773898 30773938 41 GCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTCGT GTGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTCGT < 41bp 1 0.645449042893932 1 0.666687071323395 experiment 0.709101914212135 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773918 chr16:30773899 synonymous SNV . 0 2 hm5C_associated_SNPs_20869 0 0 1 0 1 Ribosome 1 0.500231643981238 0.66662585735321 0.999536712037524 hm5C_site_21960 DeepMRMD:0.66662585735321;iRNA_m5C:0.999536712037524 21961 chr1 109803855 109803855 1 + C T COAD 109803866 + 109803846 109803886 41 CGCGGCCTGCGCCAGCGTTTCCACTTCACCCTGGCCCTCTC CGCGGCCTGTGCCAGCGTTTCCACTTCACCCTGGCCCTCTC < 41bp 1 0.150991289460705 1 0.219131022691727 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109803866 chr1:109803855 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_20870 0 0 1 0 1 Endoplasmic reticulum 1 0.500232878433064 1 0.999534243133872 hm5C_site_21961 DeepMRMD:1;iRNA_m5C:0.999534243133872 21962 chr16 2489444 2489444 1 + G A COAD 2489428 + 2489408 2489448 41 GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGCGACAG GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGCAACAG < 41bp 1 0.0255866082456101 1 0.0690689086914062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNF ENSG00000162063 CDS Human protein_coding chr16:2489428 chr16:2489444 nonsynonymous SNV 0.787 0 37 hm5C_associated_SNPs_20871 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_21962 DeepMRMD:1;iRNA_m5C:0.999536712157815 21963 chr3 49842010 49842010 1 + C T COAD 49842020 + 49842000 49842040 41 CCACCATCCACGGCCCAAGTCCACCCCAGACGCCTGCCTGG CCACCATCCATGGCCCAAGTCCACCCCAGACGCCTGCCTGG < 41bp 1 0.165399639526887 1 0.153165847063065 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM212A ENSG00000185614 CDS Human protein_coding chr3:49842020 chr3:49842010 nonsynonymous SNV 0.608 4 11 hm5C_associated_SNPs_20872 0 0 0 0 0 exosome 1 0.500231643925038 1 0.999536712149924 hm5C_site_21963 DeepMRMD:1;iRNA_m5C:0.999536712149924 21964 chr13 76395516 76395516 1 + G A COAD 76395515 + 76395495 76395535 41 CTTTTGCAAAAAGAGAGGACCGTGTAACAACTGAAATTCAG CTTTTGCAAAAAGAGAGGACCATGTAACAACTGAAATTCAG < 41bp 1 0.116898592938344 1 0.100028604269028 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76395515 chr13:76395516 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_20873 0 0 1 0 0 Cytosol 1 0.500231643741349 1 0.999536712517302 hm5C_site_21964 DeepMRMD:1;iRNA_m5C:0.999536712517302 21965 chr17 80426678 80426678 1 + T G COAD 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCGGTGTGTCCTCAATCTTTGC < 41bp 1 0.58009520039915 1 0.898734629154205 experiment 0.8398095992017 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426678 synonymous SNV . 0 22 hm5C_associated_SNPs_20875 0 0 1 0 2 Cytosol 1 0.500231644472301 0.20253074169159 0.999536711055398 hm5C_site_21965 DeepMRMD:0.20253074169159;iRNA_m5C:0.999536711055398 21966 chr14 21542359 21542359 1 + G A COAD 21542358 + 21542338 21542378 41 TACAAGGCATCAACAAGGACCGGCCAACAGGTCGCCTCAGT TACAAGGCATCAACAAGGACCAGCCAACAGGTCGCCTCAGT < 41bp 1 0.150670216039587 1 0.29567676782608 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21542358 chr14:21542359 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_20876 0 0 1 0 0 Cytosol 1 0.500231643925165 1 0.999536712149669 hm5C_site_21966 DeepMRMD:1;iRNA_m5C:0.999536712149669 21967 chr16 85698705 85698705 1 + C T COAD 85698720 + 85698700 85698740 41 CTCTCCGAGGGACAGTCCTGCCGTCTCCCTGAGTGGTAAGG CTCTCTGAGGGACAGTCCTGCCGTCTCCCTGAGTGGTAAGG < 41bp 1 0.0251465558898153 1 0.0853056609630585 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85698720 chr16:85698705 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_20878 0 0 1 0 2 Cytosol 1 0.500231643926329 1 0.999536712147342 hm5C_site_21967 DeepMRMD:1;iRNA_m5C:0.999536712147342 21968 chr16 85698705 85698705 1 + C T COAD 85698721 + 85698701 85698741 41 TCTCCGAGGGACAGTCCTGCCGTCTCCCTGAGTGGTAAGGG TCTCTGAGGGACAGTCCTGCCGTCTCCCTGAGTGGTAAGGG < 41bp 1 0.134936028589066 1 0.124894857406616 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85698721 chr16:85698705 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_20879 0 0 1 0 2 Cytosol 1 0.500231657337054 1 0.999536685325892 hm5C_site_21968 DeepMRMD:1;iRNA_m5C:0.999536685325892 21969 chr9 140003011 140003011 1 + G A COAD 140002991 + 140002971 140003011 41 AAACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAG AAACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAA < 41bp 1 0.048602517084552 1 0.1656733751297 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002991 chr9:140003011 nonsynonymous SNV 0.915 4 41 hm5C_associated_SNPs_20880 0 0 1 0 0 Ribosome 1 0.500221612891214 1 0.999556774217573 hm5C_site_21969 DeepMRMD:1;iRNA_m5C:0.999556774217573 21970 chr9 140003011 140003011 1 + G A COAD 140002992 + 140002972 140003012 41 AACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAGC AACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAAC < 41bp 1 0.513080172453862 1 0.146573960781097 experiment 0.973839655092276 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002992 chr9:140003011 nonsynonymous SNV 0.915 4 40 hm5C_associated_SNPs_20881 0 0 1 0 0 Ribosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_21970 DeepMRMD:1;iRNA_m5C:0.999536712157806 21971 chr16 29912744 29912744 1 + G A COAD 29912748 + 29912728 29912768 41 GTGAGCCGGCGGCTTCGGGCCTACGCAAGGCGCTACTCCTG GTGAGCCGGCGGCTTCAGGCCTACGCAAGGCGCTACTCCTG < 41bp 1 0.677940620438857 1 0.472908407449722 experiment 0.644118759122286 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASPHD1 ENSG00000174939 CDS Human protein_coding chr16:29912748 chr16:29912744 nonsynonymous SNV 0.987 0 17 hm5C_associated_SNPs_20882 0 0 1 0 0 nucleus 1 0.500231535266673 1 0.999536929466655 hm5C_site_21971 DeepMRMD:1;iRNA_m5C:0.999536929466655 21972 chr6 117869581 117869581 1 + G A COAD 117869589 + 117869569 117869609 41 CCTCAACCAGACGGCCATGACTGCCCTTTTGTGAACACAAT CCTCAACCAGACAGCCATGACTGCCCTTTTGTGAACACAAT < 41bp 1 0.368737202446111 1 0.11996990442276 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117869589 chr6:117869581 synonymous SNV . 0 13 hm5C_associated_SNPs_20884 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921074 1 0.999536712157852 hm5C_site_21972 DeepMRMD:1;iRNA_m5C:0.999536712157852 21973 chr19 17889578 17889578 1 + C T COAD 17889570 + 17889550 17889590 41 GCCCAGGCACCCCGCAGAGCCCGCCCAGCTGTAGGGCGCCA GCCCAGGCACCCCGCAGAGCCCGCCCAGTTGTAGGGCGCCA < 41bp 1 0.225281544929483 1 0.0628342926502228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17889570 chr19:17889578 synonymous SNV . 0 29 hm5C_associated_SNPs_20885 0 0 0 0 0 Cytosol 1 0.500231645092669 1 0.999536709814662 hm5C_site_21973 DeepMRMD:1;iRNA_m5C:0.999536709814662 21974 chr18 77474884 77474884 1 + A G COAD 77474881 + 77474861 77474901 41 GAAGTCCTCCTCCTCCGCCTCTGATGGCGAAAGCGAGGGGA GAAGTCCTCCTCCTCCGCCTCTGGTGGCGAAAGCGAGGGGA < 41bp 1 0.644429524259726 1 0.631859004497528 experiment 0.711140951480548 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77474881 chr18:77474884 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_20886 0 0 1 0 0 chromatin 1 0.500231643921381 0.736281991004944 0.999536712157237 hm5C_site_21974 DeepMRMD:0.736281991004944;iRNA_m5C:0.999536712157237 21975 chr19 45261569 45261569 1 + G A COAD 45261574 + 45261554 45261594 41 TCAGCGTCCGGCCGCGGGCTCCTCCCGCTGGTGCGCACGCT TCAGCGTCCGGCCGCAGGCTCCTCCCGCTGGTGCGCACGCT < 41bp 1 0.0499324209612214 1 0.104048013687134 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45261574 chr19:45261569 nonsynonymous SNV 0.999 3 16 hm5C_associated_SNPs_20887 0 0 0 0 1 chromatin 1 0.500231643921083 1 0.999536712157834 hm5C_site_21975 DeepMRMD:1;iRNA_m5C:0.999536712157834 21976 chr2 10560039 10560039 1 + C T COAD 10560051 + 10560031 10560071 41 AAGATCTACGCCAACTTCTTCCCCTACGGCGACGCTTCCAA AAGATCTATGCCAACTTCTTCCCCTACGGCGACGCTTCCAA < 41bp 1 0.106440968001085 1 0.147391140460968 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10560051 chr2:10560039 synonymous SNV . 0 9 hm5C_associated_SNPs_20888 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_21976 DeepMRMD:1;iRNA_m5C:0.999536712157816 21977 chr3 184104656 184104656 1 + G A COAD 184104655 + 184104635 184104675 41 ACGAACGGTGATCTGTGACCCGGTGGTGTGCCCACCGCCCA ACGAACGGTGATCTGTGACCCAGTGGTGTGCCCACCGCCCA < 41bp 1 0.697117293826324 1 0.712969720363617 experiment 0.605765412347351 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CHRD ENSG00000090539 CDS Human protein_coding chr3:184104655 chr3:184104656 synonymous SNV . 0 22 hm5C_associated_SNPs_20889 0 0 1 0 2 nucleus 1 0.500214810039753 0.574060559272766 0.999570379920493 hm5C_site_21977 DeepMRMD:0.574060559272766;iRNA_m5C:0.999570379920493 21978 chr17 47119661 47119661 1 + C T COAD 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATTGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA < 41bp 1 0.13582959114391 1 0.211308389902115 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119661 synonymous SNV . 0 4 hm5C_associated_SNPs_20891 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_21978 DeepMRMD:1;iRNA_m5C:0.999536712157815 21979 chr17 47119661 47119661 1 + C T COAD 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATTGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA < 41bp 1 0.378514612540593 1 0.231577962636948 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119661 synonymous SNV . 0 3 hm5C_associated_SNPs_20892 0 0 1 0 1 Ribosome 1 0.50023164390549 1 0.99953671218902 hm5C_site_21979 DeepMRMD:1;iRNA_m5C:0.99953671218902 21980 chr19 50338288 50338288 1 + G A COAD 50338268 + 50338248 50338288 41 CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCG CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCA < 41bp 1 0.581898192509978 1 0.827581584453583 experiment 0.836203614980044 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338268 chr19:50338288 nonsynonymous SNV 0.817 4 41 hm5C_associated_SNPs_20893 0 0 0 0 1 chromatin 1 0.500231643921092 0.344836831092834 0.999536712157815 hm5C_site_21980 DeepMRMD:0.344836831092834;iRNA_m5C:0.999536712157815 21981 chr11 62656110 62656110 1 + G A COAD 62656090 + 62656070 62656110 41 CAGCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAACG CAGCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAACA < 41bp 1 0.285370616173175 1 0.327881932258606 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62656090 chr11:62656110 nonsynonymous SNV 0.006 1 41 hm5C_associated_SNPs_20895 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_21981 DeepMRMD:1;iRNA_m5C:0.999536712157815 21982 chr11 62656110 62656110 1 + G A COAD 62656092 + 62656072 62656112 41 GCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAACGCC GCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAACACC < 41bp 1 0.347410708661578 1 0.0246091187000275 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62656092 chr11:62656110 nonsynonymous SNV 0.006 1 39 hm5C_associated_SNPs_20896 0 0 1 0 0 Nucleus 1 0.500231643921097 1 0.999536712157806 hm5C_site_21982 DeepMRMD:1;iRNA_m5C:0.999536712157806 21983 chr2 220350109 220350109 1 + C T COAD 220350113 + 220350093 220350133 41 CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT CCGCTGGGGCTTCTCTTGGCCGCGGAAGGACAAGGGGTTAT < 41bp 1 0.503198628624069 1 0.655869483947754 experiment 0.993602742751862 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220350113 chr2:220350109 nonsynonymous SNV 0.865 1 17 hm5C_associated_SNPs_20897 0 0 0 0 2 Nucleus 1 0.500231643921092 0.688261032104492 0.999536712157815 hm5C_site_21983 DeepMRMD:0.688261032104492;iRNA_m5C:0.999536712157815 21984 chr19 13264187 13264187 1 + G A COAD 13264196 + 13264176 13264216 41 TGTCGTTGCCGGCCGCCCTCCCCTCTGACCCTCGCCTGCAC TGTCGTTGCCGACCGCCCTCCCCTCTGACCCTCGCCTGCAC < 41bp 1 0.107680085677264 1 0.572973012924194 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient IER2 ENSG00000160888 CDS Human protein_coding chr19:13264196 chr19:13264187 nonsynonymous SNV 0.000 0 12 hm5C_associated_SNPs_20898 0 0 1 0 0 Ribosome 1 0.500231643792397 0.854053974151612 0.999536712415205 hm5C_site_21984 DeepMRMD:0.854053974151612;iRNA_m5C:0.999536712415205 21985 chr6 41566581 41566581 1 + C T COAD 41566589 + 41566569 41566609 41 AGACAGGCAGCCCGGGCCTCCCCTGGGCGCCCCTAACCCCA AGACAGGCAGCCTGGGCCTCCCCTGGGCGCCCCTAACCCCA < 41bp 1 0.271187493317308 1 0.289460986852646 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41566589 chr6:41566581 synonymous SNV . 0 13 hm5C_associated_SNPs_20899 0 0 0 0 0 Nucleus 1 0.500231643921442 1 0.999536712157117 hm5C_site_21985 DeepMRMD:1;iRNA_m5C:0.999536712157117 21986 chr17 67515570 67515570 1 + G T COAD 67515562 + 67515542 67515582 41 CTGTCACCTTTTATGGCGCACTGTTTCGGGAGGTAGGTGAC CTGTCACCTTTTATGGCGCACTGTTTCGTGAGGTAGGTGAC < 41bp 1 0.158599819002575 1 0.0423873662948608 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67515562 chr17:67515570 synonymous SNV . 0 29 hm5C_associated_SNPs_20900 0 0 1 0 1 cytosol 1 0.500231643838388 1 0.999536712323223 hm5C_site_21986 DeepMRMD:1;iRNA_m5C:0.999536712323223 21987 chr1 6505931 6505931 1 + C T COAD 6505928 + 6505908 6505948 41 GCCTCCTGTAGGACCACAGGCAGCTGACATCTACATGCAGA GCCTCCTGTAGGACCACAGGCAGTTGACATCTACATGCAGA < 41bp 1 0.170776019491227 1 0.457861661911011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESPN ENSG00000187017 CDS Human protein_coding chr1:6505928 chr1:6505931 nonsynonymous SNV 0.132 2 24 hm5C_associated_SNPs_20901 0 0 1 0 1 Ribosome 1 0.500231643921018 1 0.999536712157963 hm5C_site_21987 DeepMRMD:1;iRNA_m5C:0.999536712157963 21988 chr1 32620270 32620270 1 + G A COAD 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACAAAG < 41bp 1 0.209994352105163 1 0.105906367301941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620270 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_20902 0 0 1 0 2 Cytosol 1 0.5002316529001 1 0.999536694199799 hm5C_site_21988 DeepMRMD:1;iRNA_m5C:0.999536694199799 21989 chr1 32620270 32620270 1 + G A COAD 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACAAAGA < 41bp 1 0.251891752736365 1 0.352325081825256 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620270 nonsynonymous SNV 0.999 4 37 hm5C_associated_SNPs_20903 0 0 1 0 2 Cytosol 1 0.50023211597438 1 0.99953576805124 hm5C_site_21989 DeepMRMD:1;iRNA_m5C:0.99953576805124 21990 chr13 77661742 77661742 1 + G A COAD 77661728 - 77661708 77661748 41 TAATGTCATCCAAACCACTTCTCTCCATGATATTCTGTGGC TAATGTTATCCAAACCACTTCTCTCCATGATATTCTGTGGC < 41bp 1 0.0278919719452489 1 0.456948816776276 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYCBP2 ENSG00000005810 CDS Human protein_coding chr13:77661728 chr13:77661742 synonymous SNV . 0 7 hm5C_associated_SNPs_20904 0 0 1 0 1 Cytosol 1 0.500231643632805 1 0.99953671273439 hm5C_site_21990 DeepMRMD:1;iRNA_m5C:0.99953671273439 21991 chr2 232035370 232035370 1 + G A COAD 232035362 + 232035342 232035382 41 ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAAC ACCTGTGGCAGCACATGGCCCAAAAATCAAGGAGGAGGAAC < 41bp 1 0.619843229918959 1 0.0628629922866821 experiment 0.760313540162082 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232035362 chr2:232035370 nonsynonymous SNV 0.984 1 29 hm5C_associated_SNPs_20905 0 0 1 0 2 Nucleus 1 0.500338872240003 1 0.999322255519994 hm5C_site_21991 DeepMRMD:1;iRNA_m5C:0.999322255519994 21992 chr10 122625220 122625220 1 + T C COAD 122625218 + 122625198 122625238 41 AACTTTACGTGTTCGAAGATCTTATAATAACATTTTTACCA AACTTTACGTGTTCGAAGATCTCATAATAACATTTTTACCA < 41bp 1 0.193188333269041 1 0.222042292356491 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625218 chr10:122625220 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_20908 0 0 1 0 2 Nucleus 1 0.500231482661537 1 0.999537034676926 hm5C_site_21992 DeepMRMD:1;iRNA_m5C:0.999537034676926 21993 chr10 122625220 122625220 1 + T C COAD 122625228 + 122625208 122625248 41 GTTCGAAGATCTTATAATAACATTTTTACCACTTCAAATGA GTTCGAAGATCTCATAATAACATTTTTACCACTTCAAATGA < 41bp 1 0.118889733247106 1 0.107596635818481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625228 chr10:122625220 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_20909 0 0 1 0 2 Nucleus 1 0.500231643920978 1 0.999536712158043 hm5C_site_21993 DeepMRMD:1;iRNA_m5C:0.999536712158043 21994 chr15 45427484 45427484 1 + G T COAD 45427487 + 45427467 45427507 41 GTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG GTCCCAGCAATCCCCGGTACCCGGTGAGGCGGGGAAGGCGG < 41bp 1 0.551200638892975 1 0.412852674722672 experiment 0.89759872221405 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427487 chr15:45427484 nonsynonymous SNV 0.995 2 18 hm5C_associated_SNPs_20910 0 0 0 0 1 chromatin 1 0.500231718198457 1 0.999536563603087 hm5C_site_21994 DeepMRMD:1;iRNA_m5C:0.999536563603087 21995 chr15 45427483 45427483 1 + G T COAD 45427487 + 45427467 45427507 41 GTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG GTCCCAGCAATCCCCGTGACCCGGTGAGGCGGGGAAGGCGG < 41bp 1 0.540522490795497 1 0.451283723115921 experiment 0.918955018409006 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427487 chr15:45427483 synonymous SNV . 0 17 hm5C_associated_SNPs_20911 0 0 0 0 1 chromatin 1 0.50023160473038 1 0.999536790539241 hm5C_site_21995 DeepMRMD:1;iRNA_m5C:0.999536790539241 21996 chr7 142459661 142459661 1 + A C COAD 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGACGTCCTGGAGGGGAA < 41bp 1 0.649964711688966 1 0.103840619325638 experiment 0.700070576622069 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459661 nonsynonymous SNV 0.195 1 27 hm5C_associated_SNPs_20912 0 0 0 0 1 Cytosol 1 0.500231643953328 1 0.999536712093344 hm5C_site_21996 DeepMRMD:1;iRNA_m5C:0.999536712093344 21997 chr7 142459661 142459661 1 + A C COAD 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGACGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.445103179736186 1 0.307300806045532 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459661 nonsynonymous SNV 0.195 1 18 hm5C_associated_SNPs_20914 0 0 0 0 1 Cytosol 1 0.500231643915243 1 0.999536712169514 hm5C_site_21997 DeepMRMD:1;iRNA_m5C:0.999536712169514 21998 chr7 142459661 142459661 1 + A C COAD 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG ACGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.568853124269807 1 0.217536687850952 experiment 0.862293751460385 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459661 nonsynonymous SNV 0.195 1 2 hm5C_associated_SNPs_20915 0 0 0 0 1 Cytosol 1 0.500231643954388 1 0.999536712091224 hm5C_site_21998 DeepMRMD:1;iRNA_m5C:0.999536712091224 21999 chr1 46977842 46977842 1 + G A COAD 46977851 + 46977831 46977871 41 CAGCACATGGCGGCCACCAACAACCTGGTGCACTACTCGTC CAGCACATGGCAGCCACCAACAACCTGGTGCACTACTCGTC < 41bp 1 0.429999488300311 1 0.358771055936813 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46977851 chr1:46977842 synonymous SNV . 0 12 hm5C_associated_SNPs_20918 0 0 0 0 0 nucleolus 1 0.500231404551246 1 0.999537190897507 hm5C_site_21999 DeepMRMD:1;iRNA_m5C:0.999537190897507 22000 chr4 5733335 5733335 1 + C T COAD 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCAGCTGCACCTTCCTCCGGGTGAACGCCTTCCC < 41bp 1 0.0425861955183283 1 0.0902552306652069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733335 nonsynonymous SNV 0.023 0 13 hm5C_associated_SNPs_20919 0 0 1 0 1 Nucleus 1 0.500231643893763 1 0.999536712212473 hm5C_site_22000 DeepMRMD:1;iRNA_m5C:0.999536712212473 22001 chr4 99341184 99341184 1 + A G COAD 99341204 + 99341184 99341224 41 AAGATGTTATCAGCTGGGGTCACAGAGGCAGTTTTGAAATT GAGATGTTATCAGCTGGGGTCACAGAGGCAGTTTTGAAATT < 41bp 1 0.304027202732342 1 0.314304232597351 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99341204 chr4:99341184 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_20920 0 0 0 0 1 Ribosome 1 0.500231643861612 1 0.999536712276776 hm5C_site_22001 DeepMRMD:1;iRNA_m5C:0.999536712276776 22002 chr12 104492158 104492158 1 + C T COAD 104492140 + 104492120 104492160 41 GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGTGG < 41bp 1 0.466733016970438 1 0.437508314847946 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104492140 chr12:104492158 nonsynonymous SNV 0.979 0 39 hm5C_associated_SNPs_20921 0 0 0 0 1 Cytosol 1 0.500231644159021 1 0.999536711681957 hm5C_site_22002 DeepMRMD:1;iRNA_m5C:0.999536711681957 22003 chr7 141341093 141341093 1 + A G COAD 141341103 + 141341083 141341123 41 CACGGGACCTACAGAGAGACCTCCCAATGAACCAGAGGAGA CACGGGACCTGCAGAGAGACCTCCCAATGAACCAGAGGAGA < 41bp 1 0.339476234966565 1 0.134291917085648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141341103 chr7:141341093 nonsynonymous SNV 0.996 0 11 hm5C_associated_SNPs_20922 0 0 1 0 1 Cytosol 1 0.500231643922131 1 0.999536712155737 hm5C_site_22003 DeepMRMD:1;iRNA_m5C:0.999536712155737 22004 chr8 17419501 17419501 1 + C T COAD 17419497 + 17419477 17419517 41 TCTTGACCACTTACGGAGTTCATGCCATCACCAGGCTGGAG TCTTGACCACTTACGGAGTTCATGTCATCACCAGGCTGGAG < 41bp 1 0.314957959174109 1 0.0810132026672363 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17419497 chr8:17419501 nonsynonymous SNV 0.014 1 25 hm5C_associated_SNPs_20923 0 0 1 0 1 Ribosome 1 0.500231643702252 1 0.999536712595495 hm5C_site_22004 DeepMRMD:1;iRNA_m5C:0.999536712595495 22005 chr7 142459627 142459627 1 + G T COAD 142459625 + 142459605 142459645 41 ATGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGG ATGCCTGCCCTGCCCATCAGCCTCATCCAGGTGAGACTGGG < 41bp 1 0.226878351676157 1 0.1024409532547 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459625 chr7:142459627 nonsynonymous SNV 0.686 3 23 hm5C_associated_SNPs_20924 0 0 0 0 1 Cytosol 1 0.500231643921057 1 0.999536712157885 hm5C_site_22005 DeepMRMD:1;iRNA_m5C:0.999536712157885 22006 chr7 142459627 142459627 1 + G T COAD 142459626 + 142459606 142459646 41 TGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGA TGCCTGCCCTGCCCATCAGCCTCATCCAGGTGAGACTGGGA < 41bp 1 0.269434964849247 1 0.181664943695068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459626 chr7:142459627 nonsynonymous SNV 0.686 3 22 hm5C_associated_SNPs_20925 0 0 0 0 1 Cytosol 1 0.500231643866171 1 0.999536712267658 hm5C_site_22006 DeepMRMD:1;iRNA_m5C:0.999536712267658 22007 chr7 142459627 142459627 1 + G T COAD 142459628 + 142459608 142459648 41 CCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGA CCTGCCCTGCCCATCAGCCTCATCCAGGTGAGACTGGGAGA < 41bp 1 0.306314898510415 1 0.087552934885025 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459628 chr7:142459627 nonsynonymous SNV 0.686 3 20 hm5C_associated_SNPs_20926 0 0 0 0 1 Cytosol 1 0.500231643504474 1 0.999536712991052 hm5C_site_22007 DeepMRMD:1;iRNA_m5C:0.999536712991052 22008 chr7 142459627 142459627 1 + G T COAD 142459631 + 142459611 142459651 41 GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCA GCCCTGCCCATCAGCCTCATCCAGGTGAGACTGGGAGAGCA < 41bp 1 0.615646926792619 1 0.857844233512878 experiment 0.768706146414762 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459631 chr7:142459627 nonsynonymous SNV 0.686 3 17 hm5C_associated_SNPs_20927 0 0 0 0 1 Cytosol 1 0.5002316217088 0.284311532974244 0.999536756582399 hm5C_site_22008 DeepMRMD:0.284311532974244;iRNA_m5C:0.999536756582399 22009 chr1 233489657 233489657 1 + C T COAD 233489675 + 233489655 233489695 41 GCCCATTCCATCCACCTGCCCTGAGCCGTTTGCCAAGCTCA GCTCATTCCATCCACCTGCCCTGAGCCGTTTGCCAAGCTCA < 41bp 1 0.375152767062372 1 0.133218854665756 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233489675 chr1:233489657 nonsynonymous SNV 0.785 5 3 hm5C_associated_SNPs_20928 0 0 1 0 1 unknown 1 0.500252620020158 1 0.999494759959684 hm5C_site_22009 DeepMRMD:1;iRNA_m5C:0.999494759959684 22010 chr15 69718690 69718690 1 + G A COAD 69718677 + 69718657 69718697 41 ATTTCTCTGTTGTCCTAGGCCAGAAAAAGAGACGTATTGCT ATTTCTCTGTTGTCCTAGGCCAGAAAAAGAGACATATTGCT < 41bp 1 0.516184320989485 1 0.544972121715546 experiment 0.96763135802103 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69718677 chr15:69718690 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_20929 0 0 1 0 1 Nucleus 1 0.500231643929205 0.910055756568908 0.999536712141589 hm5C_site_22010 DeepMRMD:0.910055756568908;iRNA_m5C:0.999536712141589 22011 chr16 56667676 56667676 1 + C T COAD 56667667 + 56667647 56667687 41 TCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGCCCCGTGGG TCCCCTTCTTCCCCAGGCTGCTGCTCCTGTTGCCCCGTGGG < 41bp 1 0.22601403759929 1 0.111606806516647 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MT1M ENSG00000205364 CDS Human protein_coding chr16:56667667 chr16:56667676 synonymous SNV . 0 30 hm5C_associated_SNPs_20930 0 0 0 2 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22011 DeepMRMD:1;iRNA_m5C:0.999536712157815 22012 chr5 137735620 137735620 1 + A G COAD 137735614 + 137735594 137735634 41 GTGATGTGTGTGAAACAACTCTCTTCAACATCCACTGGGTT GTGATGTGTGTGAAACAACTCTCTTCGACATCCACTGGGTT < 41bp 1 0.130096418497052 1 0.0544739067554474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137735614 chr5:137735620 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_20931 0 0 1 0 2 Nucleus 1 0.500231643921125 1 0.99953671215775 hm5C_site_22012 DeepMRMD:1;iRNA_m5C:0.99953671215775 22013 chr11 130013309 130013309 1 + C A COAD 130013308 + 130013288 130013328 41 AGAACCATGGCTATGAGAACCCCACCTACAAATACCTGGAG AGAACCATGGCTATGAGAACCACACCTACAAATACCTGGAG < 41bp 1 0.30230367946996 1 0.561814904212952 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130013308 chr11:130013309 nonsynonymous SNV 0.980 5 22 hm5C_associated_SNPs_20932 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643040145 0.876370191574096 0.999536713919711 hm5C_site_22013 DeepMRMD:0.876370191574096;iRNA_m5C:0.999536713919711 22014 chr6 158497751 158497751 1 + C T COAD 158497757 + 158497737 158497777 41 CAAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTG CAAGCGACAAATGCTGCACCCCCGCCTGGACAGACAGGGTG < 41bp 1 0.167018302379776 1 0.107027411460876 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497757 chr6:158497751 nonsynonymous SNV 0.948 4 15 hm5C_associated_SNPs_20933 0 0 1 0 2 Cytosol 1 0.500231643921089 1 0.999536712157822 hm5C_site_22014 DeepMRMD:1;iRNA_m5C:0.999536712157822 22015 chr6 158497751 158497751 1 + C T COAD 158497758 + 158497738 158497778 41 AAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTGC AAGCGACAAATGCTGCACCCCCGCCTGGACAGACAGGGTGC < 41bp 1 0.128821677701193 1 0.157418459653854 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497758 chr6:158497751 nonsynonymous SNV 0.948 4 14 hm5C_associated_SNPs_20934 0 0 1 0 2 Cytosol 1 0.50023158267712 1 0.99953683464576 hm5C_site_22015 DeepMRMD:1;iRNA_m5C:0.99953683464576 22016 chr12 53685788 53685788 1 + G T COAD 53685807 + 53685787 53685827 41 GGGAAAGCATGCCCAGCCTCCAAGCACTGCCTGTCACCCGG GTGAAAGCATGCCCAGCCTCCAAGCACTGCCTGTCACCCGG < 41bp 1 0.320888568687586 1 0.345775902271271 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53685807 chr12:53685788 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_20935 0 0 1 0 2 Nucleus 1 0.500231641412271 1 0.999536717175459 hm5C_site_22016 DeepMRMD:1;iRNA_m5C:0.999536717175459 22017 chr12 94072723 94072723 1 + T C COAD 94072703 + 94072683 94072723 41 AATGCTCAAACCACAGGCCTCCGGAAAACAATGCTCCTGCT AATGCTCAAACCACAGGCCTCCGGAAAACAATGCTCCTGCC < 41bp 1 0.68386139082847 1 0.612066388130188 experiment 0.632277218343061 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRADD ENSG00000169372 CDS Human protein_coding chr12:94072703 chr12:94072723 nonsynonymous SNV 0.981 4 41 hm5C_associated_SNPs_20936 0 0 1 0 0 Ribosome 1 0.500231608297799 0.775867223739624 0.999536783404402 hm5C_site_22017 DeepMRMD:0.775867223739624;iRNA_m5C:0.999536783404402 22018 chr11 33358677 33358677 1 + T C COAD 33358660 + 33358640 33358680 41 CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGCACT < 41bp 1 0.229046695348191 1 0.124679148197174 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358660 chr11:33358677 synonymous SNV . 0 38 hm5C_associated_SNPs_20937 0 0 1 0 2 Cytosol 1 0.500231643921088 1 0.999536712157823 hm5C_site_22018 DeepMRMD:1;iRNA_m5C:0.999536712157823 22019 chr7 55259434 55259434 1 + G A COAD 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCATCGCTTGGTGCACCGCGA < 41bp 1 0.0474997313550034 1 0.262443482875824 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259434 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_20938 0 0 1 0 1 Nucleus 1 0.500231643921111 1 0.999536712157777 hm5C_site_22019 DeepMRMD:1;iRNA_m5C:0.999536712157777 22020 chr6 157527994 157527994 1 + A G COAD 157528014 + 157527994 157528034 41 ATCCAGCAAGCCAAAAGTCACCGGAACATCAAGCTGCTGGA GTCCAGCAAGCCAAAAGTCACCGGAACATCAAGCTGCTGGA < 41bp 1 0.328970996257585 1 0.123365700244904 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARID1B ENSG00000049618 CDS Human protein_coding chr6:157528014 chr6:157527994 nonsynonymous SNV 0.462 1 1 hm5C_associated_SNPs_20939 0 0 1 0 0 Ribosome 1 0.500232411414755 1 0.99953517717049 hm5C_site_22020 DeepMRMD:1;iRNA_m5C:0.99953517717049 22021 chr1 27088697 27088697 1 + C A COAD 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTAAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA < 41bp 1 0.221878236706639 1 0.077915221452713 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088697 stopgain 0.990 1 4 hm5C_associated_SNPs_20940 0 0 1 0 1 Nucleus 1 0.50023164392109 1 0.999536712157821 hm5C_site_22021 DeepMRMD:1;iRNA_m5C:0.999536712157821 22022 chr2 101622468 101622468 1 + A T COAD 101622449 + 101622429 101622469 41 CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAG CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGTG < 41bp 1 0.190103988494571 1 0.400793313980103 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622449 chr2:101622468 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_20941 0 0 1 0 2 Cytosol 1 0.500231643879194 1 0.999536712241613 hm5C_site_22022 DeepMRMD:1;iRNA_m5C:0.999536712241613 22023 chr19 48179165 48179165 1 + G A COAD 48179146 + 48179126 48179166 41 CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAGG CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAAG < 41bp 1 0.155945184876516 1 0.614430606365204 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICRA ENSG00000063169 CDS Human protein_coding chr19:48179146 chr19:48179165 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_20944 0 0 1 0 2 unknown 1 0.500231643921092 0.771138787269592 0.999536712157816 hm5C_site_22023 DeepMRMD:0.771138787269592;iRNA_m5C:0.999536712157816 22024 chr1 220964945 220964945 1 + T G COAD 220964927 + 220964907 220964947 41 TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCTAC TGACCTGCGATGGTGACACCCTGACTCTCAGTGCAGCCGAC < 41bp 1 0.429095936255199 1 0.145555824041367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964927 chr1:220964945 nonsynonymous SNV 0.998 0 39 hm5C_associated_SNPs_20946 0 0 1 0 1 Ribosome 1 0.500240007859052 1 0.999519984281896 hm5C_site_22024 DeepMRMD:1;iRNA_m5C:0.999519984281896 22025 chr7 76111982 76111982 1 + C T COAD 76111966 + 76111946 76111986 41 CTATCTGGAGCAGCAGGTGGCCAGGGGCAACCAGCTCGTGG CTATCTGGAGCAGCAGGTGGCCAGGGGCAACCAGCTTGTGG < 41bp 1 0.420188294147017 1 0.822957217693329 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DTX2 ENSG00000091073 CDS Human protein_coding chr7:76111966 chr7:76111982 synonymous SNV . 0 37 hm5C_associated_SNPs_20948 0 0 0 0 0 Nucleus 1 0.500231644289344 0.354085564613342 0.999536711421312 hm5C_site_22025 DeepMRMD:0.354085564613342;iRNA_m5C:0.999536711421312 22026 chr10 102762413 102762413 1 + G A COAD 102762420 + 102762400 102762440 41 CCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCGCCACCACG CCGGCCCTGTCCCAGGGGGCCAGCTCCTCCCCGCCACCACG < 41bp 1 0.271521934665618 1 0.366937577724457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102762420 chr10:102762413 nonsynonymous SNV 0.757 0 14 hm5C_associated_SNPs_20949 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_22026 DeepMRMD:1;iRNA_m5C:0.999536712157816 22027 chr19 7589943 7589943 1 + G A COAD 7589936 + 7589916 7589956 41 CACCCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC CACCCCCAGAAGAGGAAGACCTTCGCCATCGTCTCAAATAC < 41bp 1 0.310369215405765 1 0.181242257356644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589936 chr19:7589943 nonsynonymous SNV 0.985 4 28 hm5C_associated_SNPs_20950 0 0 1 0 1 chromatin 1 0.500256325371665 1 0.99948734925667 hm5C_site_22027 DeepMRMD:1;iRNA_m5C:0.99948734925667 22028 chr19 45974486 45974486 1 + G A COAD 45974494 + 45974474 45974514 41 AGCGAAGGGTGCGCCGGGAACGAAATAAACTAGCAGCAGCT AGCGAAGGGTGCACCGGGAACGAAATAAACTAGCAGCAGCT < 41bp 1 0.66608760826416 1 0.473102778196335 experiment 0.667824783471681 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45974494 chr19:45974486 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_20951 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_22028 DeepMRMD:1;iRNA_m5C:0.999536712157816 22029 chr1 78001627 78001627 1 + C T COAD 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGATGACAC < 41bp 1 0.353689372592684 1 0.470032870769501 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001627 synonymous SNV . 0 36 hm5C_associated_SNPs_20953 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22029 DeepMRMD:1;iRNA_m5C:0.999536712157815 22030 chr5 66462616 66462616 1 + G A COAD 66462596 + 66462576 66462616 41 CTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCACCCCG CTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCACCCCA < 41bp 1 0.360989104764623 1 0.217587351799011 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462596 chr5:66462616 nonsynonymous SNV 0.003 0 41 hm5C_associated_SNPs_20954 0 0 0 0 0 Cytosol 1 0.500231643787635 1 0.99953671242473 hm5C_site_22030 DeepMRMD:1;iRNA_m5C:0.99953671242473 22031 chr1 54670693 54670693 1 + G A COAD 54670699 + 54670679 54670719 41 ATTACCTCAAAGGTGTAAAGCAGGCCCTCTGGCTCACCAAG ATTACCTCAAAGGTATAAAGCAGGCCCTCTGGCTCACCAAG < 41bp 1 0.374881088521347 1 0.649189710617065 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54670699 chr1:54670693 nonsynonymous SNV 0.912 1 15 hm5C_associated_SNPs_20956 0 0 1 0 1 Ribosome 1 0.500231643921092 0.70162057876587 0.999536712157815 hm5C_site_22031 DeepMRMD:0.70162057876587;iRNA_m5C:0.999536712157815 22032 chr12 31244686 31244686 1 + G A COAD 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATCAGATGCTGCTGCATACGGCCACTCGGCAGGCCGCGG < 41bp 1 0.605957015455605 1 0.275212496519089 experiment 0.788085969088789 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244686 nonsynonymous SNV 0.290 0 20 hm5C_associated_SNPs_20957 0 0 1 0 1 Cytosol 1 0.500231643918864 1 0.999536712162271 hm5C_site_22032 DeepMRMD:1;iRNA_m5C:0.999536712162271 22033 chr12 31244686 31244686 1 + G A COAD 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATACGGCCACTCGGCAGGCCGCGGGCAT < 41bp 1 0.226120456403945 1 0.033778965473175 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244686 nonsynonymous SNV 0.290 0 16 hm5C_associated_SNPs_20958 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_22033 DeepMRMD:1;iRNA_m5C:0.999536712157815 22034 chr19 56190108 56190108 1 + C A COAD 56190096 + 56190076 56190116 41 CGAGCAATGACCCCTGGGGCCCATCCAGCTCCCTCATGTCA CGAGCAATGACCCCTGGGGCCCATCCAGCTCCATCATGTCA < 41bp 1 0.0217408783804111 1 0.0107534825801849 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPN1 ENSG00000063245 CDS Human protein_coding chr19:56190096 chr19:56190108 nonsynonymous SNV 0.997 3 33 hm5C_associated_SNPs_20959 0 0 1 0 0 chromatin 1 0.500231678108929 1 0.999536643782142 hm5C_site_22034 DeepMRMD:1;iRNA_m5C:0.999536643782142 22035 chr3 126724993 126724993 1 + G A COAD 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCATCTTCTACAACTGCAGCGTCCACCAGTC < 41bp 1 0.208777985344973 1 0.216783136129379 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126724993 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_20960 0 0 1 0 2 Ribosome 1 0.50023488935774 1 0.999530221284521 hm5C_site_22035 DeepMRMD:1;iRNA_m5C:0.999530221284521 22036 chr15 42105244 42105244 1 + G T COAD 42105224 + 42105204 42105244 41 GGAAAAAAGGCGGACAGTACCTTCTGCATCACGTCCTCAGG GGAAAAAAGGCGGACAGTACCTTCTGCATCACGTCCTCAGT < 41bp 1 0.265526269008802 1 0.0420383512973785 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42105224 chr15:42105244 nonsynonymous SNV 0.937 4 41 hm5C_associated_SNPs_20962 0 0 1 0 0 Endoplasmic reticulum 1 0.500231559721983 1 0.999536880556033 hm5C_site_22036 DeepMRMD:1;iRNA_m5C:0.999536880556033 22037 chr2 27663746 27663746 1 + C A COAD 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGACATCACATGTCGTGCCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.23359408973323 1 0.0167120397090912 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663746 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_20963 0 0 0 0 2 Cytosol 1 0.500231649048041 1 0.999536701903917 hm5C_site_22037 DeepMRMD:1;iRNA_m5C:0.999536701903917 22038 chr19 58906065 58906065 1 + A G COAD 58906069 + 58906049 58906089 41 GGCTCCTCGAACTCCTATGCCATTAAGAAGAAGGACGAGCT GGCTCCTCGAACTCCTGTGCCATTAAGAAGAAGGACGAGCT < 41bp 1 0.194632415575259 1 0.0768926441669464 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906069 chr19:58906065 nonsynonymous SNV 0.999 4 17 hm5C_associated_SNPs_20965 0 0 1 0 1 Ribosome 1 0.500231643926819 1 0.999536712146362 hm5C_site_22038 DeepMRMD:1;iRNA_m5C:0.999536712146362 22039 chr22 29695767 29695767 1 + G T COAD 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGTGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG < 41bp 1 0.385495724449795 1 0.214234828948975 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695767 synonymous SNV . 0 7 hm5C_associated_SNPs_20966 0 0 1 0 1 Cytosol 1 0.500231563728678 1 0.999536872542645 hm5C_site_22039 DeepMRMD:1;iRNA_m5C:0.999536872542645 22040 chr14 102466429 102466429 1 + C T COAD 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGTGCTGG < 41bp 1 0.184433382319026 1 0.595104157924652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466429 nonsynonymous SNV 0.950 4 36 hm5C_associated_SNPs_20967 0 0 1 0 1 Cytosol 1 0.500231643921342 0.809791684150696 0.999536712157316 hm5C_site_22040 DeepMRMD:0.809791684150696;iRNA_m5C:0.999536712157316 22041 chr7 92020506 92020506 1 + C T COAD 92020521 + 92020501 92020541 41 GAAGACCTTGCCCAGAAAGTCAATAGGCCTTACCTTCGCAC GAAGATCTTGCCCAGAAAGTCAATAGGCCTTACCTTCGCAC < 41bp 1 0.5618375867715 1 0.164506286382675 experiment 0.876324826457001 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92020521 chr7:92020506 synonymous SNV . 0 6 hm5C_associated_SNPs_20968 0 0 1 0 1 Cytosol 1 0.50023164392101 1 0.999536712157979 hm5C_site_22041 DeepMRMD:1;iRNA_m5C:0.999536712157979 22042 chr1 44071227 44071227 1 + T C COAD 44071222 + 44071202 44071242 41 GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGG GGTTCTACATTGTTGTGGTGCCCATCGACCGTGTGGGCGGG < 41bp 1 0.0648904351408582 1 0.0541650354862213 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071222 chr1:44071227 synonymous SNV . 0 26 hm5C_associated_SNPs_20969 0 0 1 0 2 Ribosome 1 0.500232791965664 1 0.999534416068671 hm5C_site_22042 DeepMRMD:1;iRNA_m5C:0.999534416068671 22043 chr1 44071227 44071227 1 + T C COAD 44071223 + 44071203 44071243 41 GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGA GTTCTACATTGTTGTGGTGCCCATCGACCGTGTGGGCGGGA < 41bp 1 0.0346422777713279 1 0.137199401855469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071223 chr1:44071227 synonymous SNV . 0 25 hm5C_associated_SNPs_20970 0 0 1 0 2 Ribosome 1 0.500231643949419 1 0.999536712101162 hm5C_site_22043 DeepMRMD:1;iRNA_m5C:0.999536712101162 22044 chrX 48457784 48457784 1 + G A COAD 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCATCGTTCTG < 41bp 1 0.313060258676583 1 0.0420770347118378 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457784 nonsynonymous SNV 0.994 3 33 hm5C_associated_SNPs_20972 0 0 1 0 1 Ribosome 1 0.50023164491236 1 0.99953671017528 hm5C_site_22044 DeepMRMD:1;iRNA_m5C:0.99953671017528 22045 chrX 48457784 48457784 1 + G A COAD 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT GATCCTCGGGCCCTGGGGGCCCGTGGGCACCATCGTTCTGT < 41bp 1 0.289485772648582 1 0.211584538221359 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457784 nonsynonymous SNV 0.994 3 32 hm5C_associated_SNPs_20973 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22045 DeepMRMD:1;iRNA_m5C:0.999536712157815 22046 chr19 13248341 13248341 1 + G A COAD 13248325 + 13248305 13248345 41 AACAGCTGCGGCACCGGCATCCGCTCTTCTACCAACGATCC AACAGCTGCGGCACCGGCATCCGCTCTTCTACCAACAATCC < 41bp 1 0.12969266303324 1 0.0815125107765198 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NACC1 ENSG00000160877 CDS Human protein_coding chr19:13248325 chr19:13248341 nonsynonymous SNV 0.424 2 37 hm5C_associated_SNPs_20975 0 0 1 0 1 Ribosome 1 0.500231592081188 1 0.999536815837625 hm5C_site_22046 DeepMRMD:1;iRNA_m5C:0.999536815837625 22047 chr3 9976245 9976245 1 + T C COAD 9976249 + 9976229 9976269 41 AGTCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGC AGTCTTCTCCCCCGCCCCAGCCCCATCCGTGTCATACCTGC < 41bp 1 0.474472728265417 1 0.165260553359985 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976249 chr3:9976245 synonymous SNV . 0 17 hm5C_associated_SNPs_20976 0 0 1 0 1 chromatin 1 0.500231670772604 1 0.999536658454792 hm5C_site_22047 DeepMRMD:1;iRNA_m5C:0.999536658454792 22048 chr3 9976245 9976245 1 + T C COAD 9976251 + 9976231 9976271 41 TCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCG TCTTCTCCCCCGCCCCAGCCCCATCCGTGTCATACCTGCCG < 41bp 1 0.0357540018579389 1 0.0380202531814575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976251 chr3:9976245 synonymous SNV . 0 15 hm5C_associated_SNPs_20977 0 0 1 0 1 chromatin 1 0.500160115234213 1 0.999679769531574 hm5C_site_22048 DeepMRMD:1;iRNA_m5C:0.999679769531574 22049 chr3 9976245 9976245 1 + T C COAD 9976252 + 9976232 9976272 41 CTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCGG CTTCTCCCCCGCCCCAGCCCCATCCGTGTCATACCTGCCGG < 41bp 1 0.199397220176887 1 0.230963051319122 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976252 chr3:9976245 synonymous SNV . 0 14 hm5C_associated_SNPs_20978 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_22049 DeepMRMD:1;iRNA_m5C:0.999536712157815 22050 chr18 29116355 29116355 1 + T C COAD 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCCGTCATTGACAAACCACCCGGCATGGCAGAAAAA < 41bp 1 0.0882102832614394 1 0.0896272957324982 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116355 synonymous SNV . 0 26 hm5C_associated_SNPs_20980 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921161 1 0.999536712157678 hm5C_site_22050 DeepMRMD:1;iRNA_m5C:0.999536712157678 22051 chr18 29116355 29116355 1 + T C COAD 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCCGTCATTGACAAACCACCCGGCATGGCAGAAAAATGGA < 41bp 1 0.2161685631634 1 0.193851143121719 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116355 synonymous SNV . 0 22 hm5C_associated_SNPs_20981 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164795103 1 0.999536704097939 hm5C_site_22051 DeepMRMD:1;iRNA_m5C:0.999536704097939 22052 chr18 29116355 29116355 1 + T C COAD 29116363 + 29116343 29116383 41 TGACAAACCACCTGGCATGGCAGAAAAATGGAAAATAGCAC TGACAAACCACCCGGCATGGCAGAAAAATGGAAAATAGCAC < 41bp 1 0.571061937592053 1 0.359875530004501 experiment 0.857876124815894 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116363 chr18:29116355 synonymous SNV . 0 13 hm5C_associated_SNPs_20982 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921088 1 0.999536712157824 hm5C_site_22052 DeepMRMD:1;iRNA_m5C:0.999536712157824 22053 chr3 132226083 132226083 1 + T C COAD 132226097 + 132226077 132226117 41 AAAGGGTGATTGTGACAAAACTTATGGATCAGAATTTGTCT AAAGGGCGATTGTGACAAAACTTATGGATCAGAATTTGTCT < 41bp 1 0.0718584966028308 1 0.0690945684909821 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNAJC13 ENSG00000138246 CDS Human protein_coding chr3:132226097 chr3:132226083 synonymous SNV . 0 7 hm5C_associated_SNPs_20983 0 0 0 0 0 Nucleus 1 0.50023165763624 1 0.999536684727519 hm5C_site_22053 DeepMRMD:1;iRNA_m5C:0.999536684727519 22054 chr3 61975335 61975335 1 + T C COAD 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGCCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC < 41bp 1 0.184405834086623 1 0.19068843126297 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975335 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_20984 0 0 1 0 1 Ribosome 1 0.500231643925669 1 0.999536712148662 hm5C_site_22054 DeepMRMD:1;iRNA_m5C:0.999536712148662 22055 chr6 33179725 33179725 1 + C T COAD 33179728 + 33179708 33179748 41 TTGCCCAGCCTGGAGGGCGTCAGTGAAAAGCAGTACACCAT TTGCCCAGCCTGGAGGGTGTCAGTGAAAAGCAGTACACCAT < 41bp 1 0.64974866503201 1 0.166161507368088 experiment 0.70050266993598 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RING1 ENSG00000204227 CDS Human protein_coding chr6:33179728 chr6:33179725 synonymous SNV . 0 18 hm5C_associated_SNPs_20985 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_22055 DeepMRMD:1;iRNA_m5C:0.999536712157818 22056 chr7 127342544 127342544 1 + T C COAD 127342535 + 127342515 127342555 41 AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT AGTGTGGTCAGGGCCCTGCTCCTCCCAGACTACTACCTGGT < 41bp 1 0.0511992407896513 1 0.0559619963169098 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127342535 chr7:127342544 synonymous SNV . 0 30 hm5C_associated_SNPs_20986 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_22056 DeepMRMD:1;iRNA_m5C:0.999536712157814 22057 chrX 107807151 107807151 1 + A T COAD 107807137 + 107807117 107807157 41 TGATGGAATTCCAGGGCCACCAGGACCAAAAGGAATCAGAG TGATGGAATTCCAGGGCCACCAGGACCAAAAGGATTCAGAG < 41bp 1 0.55374043142621 1 0.694611430168152 experiment 0.89251913714758 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107807137 chrX:107807151 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_20987 0 0 1 0 0 Ribosome 1 0.500231643921092 0.610777139663696 0.999536712157815 hm5C_site_22057 DeepMRMD:0.610777139663696;iRNA_m5C:0.999536712157815 22058 chr10 95262965 95262965 1 + C A COAD 95262979 + 95262959 95262999 41 GAAGGCCAGATATAGTACTACCACATTGCTTGAACAGCTGG GAAGGCAAGATATAGTACTACCACATTGCTTGAACAGCTGG < 41bp 1 0.47416722902498 1 0.0793690383434296 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262979 chr10:95262965 synonymous SNV . 0 7 hm5C_associated_SNPs_20988 0 0 1 0 1 Ribosome 1 0.500231643954235 1 0.999536712091531 hm5C_site_22058 DeepMRMD:1;iRNA_m5C:0.999536712091531 22059 chr10 95262965 95262965 1 + C A COAD 95262980 + 95262960 95263000 41 AAGGCCAGATATAGTACTACCACATTGCTTGAACAGCTGGA AAGGCAAGATATAGTACTACCACATTGCTTGAACAGCTGGA < 41bp 1 0.394722621521926 1 0.101385235786438 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262980 chr10:95262965 synonymous SNV . 0 6 hm5C_associated_SNPs_20989 0 0 1 0 1 Ribosome 1 0.500231660768552 1 0.999536678462895 hm5C_site_22059 DeepMRMD:1;iRNA_m5C:0.999536678462895 22060 chr10 95262965 95262965 1 + C A COAD 95262982 + 95262962 95263002 41 GGCCAGATATAGTACTACCACATTGCTTGAACAGCTGGAAG GGCAAGATATAGTACTACCACATTGCTTGAACAGCTGGAAG < 41bp 1 0.271081084345031 1 0.168268829584122 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262982 chr10:95262965 synonymous SNV . 0 4 hm5C_associated_SNPs_20990 0 0 1 0 1 Ribosome 1 0.500210467579262 1 0.999579064841476 hm5C_site_22060 DeepMRMD:1;iRNA_m5C:0.999579064841476 22061 chr19 46003801 46003801 1 + G T COAD 46003784 + 46003764 46003804 41 ACTCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGGGGG ACTCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGTGGG < 41bp 1 0.349835782310929 1 0.373935461044312 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003784 chr19:46003801 nonsynonymous SNV 0.998 3 38 hm5C_associated_SNPs_20991 0 0 0 0 2 nucleolus 1 0.5002316439268 1 0.9995367121464 hm5C_site_22061 DeepMRMD:1;iRNA_m5C:0.9995367121464 22062 chr2 27595509 27595509 1 + C T COAD 27595510 + 27595490 27595530 41 CTTCGGAAGGAGTATGGGGCCAATGTGCTTCCTGCATTCCC CTTCGGAAGGAGTATGGGGTCAATGTGCTTCCTGCATTCCC < 41bp 1 0.452536632454035 1 0.222383409738541 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNX17 ENSG00000115234 CDS Human protein_coding chr2:27595510 chr2:27595509 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_20992 0 0 1 0 2 Ribosome 1 0.500231643930313 1 0.999536712139374 hm5C_site_22062 DeepMRMD:1;iRNA_m5C:0.999536712139374 22063 chr16 58074002 58074002 1 + G A COAD 58073989 + 58073969 58074009 41 CCGTTTGATGGCACCGGTGGCTTTCTGGCCCACGCCTATTT CCGTTTGATGGCACCGGTGGCTTTCTGGCCCACACCTATTT < 41bp 1 0.0542160858283162 1 0.0553499162197113 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMP15 ENSG00000102996 CDS Human protein_coding chr16:58073989 chr16:58074002 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_20993 0 0 0 0 1 Ribosome 1 0.50023157349821 1 0.99953685300358 hm5C_site_22063 DeepMRMD:1;iRNA_m5C:0.99953685300358 22064 chr17 14095434 14095434 1 + C T COAD 14095450 + 14095430 14095470 41 TACACACCACTGAAAAGGATCAGCATTGCCAACACATGGGT TACATACCACTGAAAAGGATCAGCATTGCCAACACATGGGT < 41bp 1 0.679792240867755 1 0.362011522054672 experiment 0.640415518264491 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX10 ENSG00000006695 CDS Human protein_coding chr17:14095450 chr17:14095434 nonsynonymous SNV 0.998 5 5 hm5C_associated_SNPs_20994 0 0 0 0 0 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_22064 DeepMRMD:1;iRNA_m5C:0.999536712157812 22065 chr1 242052807 242052807 1 + C A COAD 242052812 + 242052792 242052832 41 AAGAAACCCCTGTCCCCAGTCAGAGATAACATCCAACTAAC AAGAAACCCCTGTCCACAGTCAGAGATAACATCCAACTAAC < 41bp 1 0.699337484353487 1 0.935187518596649 experiment 0.601325031293025 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242052812 chr1:242052807 nonsynonymous SNV 0.990 4 16 hm5C_associated_SNPs_20995 0 0 1 1 2 Nucleus 1 0.500231645715166 0.129624962806702 0.999536708569668 hm5C_site_22065 DeepMRMD:0.129624962806702;iRNA_m5C:0.999536708569668 22066 chr1 16261103 16261103 1 + A G COAD 16261121 + 16261101 16261141 41 CCATGCCTGTGATCGACGATCGTCCGGCAGACGCGGGCTCA CCGTGCCTGTGATCGACGATCGTCCGGCAGACGCGGGCTCA < 41bp 1 0.16951937926021 1 0.189920455217361 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16261121 chr1:16261103 nonsynonymous SNV 0.431 0 3 hm5C_associated_SNPs_20996 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643669405 1 0.99953671266119 hm5C_site_22066 DeepMRMD:1;iRNA_m5C:0.99953671266119 22067 chr9 138377544 138377544 1 + G T COAD 138377552 + 138377532 138377572 41 CCAACTCCGAGAGGAGAGAGCGCCTGACCCTCCCGCACACA CCAACTCCGAGATGAGAGAGCGCCTGACCCTCCCGCACACA < 41bp 1 0.392076831434363 1 0.0912112593650818 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138377552 chr9:138377544 nonsynonymous SNV 0.032 0 13 hm5C_associated_SNPs_20997 0 0 0 0 0 Ribosome 1 0.500231643920993 1 0.999536712158015 hm5C_site_22067 DeepMRMD:1;iRNA_m5C:0.999536712158015 22068 chr2 233681732 233681732 1 + G A COAD 233681725 + 233681705 233681745 41 AAAGGCGAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGTA AAAGGCGAGAGGAAGAAGAACTTGCCCAAAGGAAACAGGTA < 41bp 1 0.11247747401994 1 0.247568309307098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681725 chr2:233681732 nonsynonymous SNV 0.999 4 28 hm5C_associated_SNPs_20998 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157817 hm5C_site_22068 DeepMRMD:1;iRNA_m5C:0.999536712157817 22069 chr2 233681732 233681732 1 + G A COAD 233681730 + 233681710 233681750 41 CGAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGTATGTAT CGAGAGGAAGAAGAACTTGCCCAAAGGAAACAGGTATGTAT < 41bp 1 0.343309014480371 1 0.435908555984497 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681730 chr2:233681732 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_20999 0 0 1 0 0 Nucleus 1 0.500221764096354 1 0.999556471807292 hm5C_site_22069 DeepMRMD:1;iRNA_m5C:0.999556471807292 22070 chr10 13251099 13251099 1 + G A COAD 13251100 + 13251080 13251120 41 TTCTGTTTCAGTAACTGTGGCCTCTACAAATGGGAACGGGA TTCTGTTTCAGTAACTGTGACCTCTACAAATGGGAACGGGA < 41bp 1 0.0312095457369788 1 0.122495174407959 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13251100 chr10:13251099 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_21000 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22070 DeepMRMD:1;iRNA_m5C:0.999536712157815 22071 chr10 13251099 13251099 1 + G A COAD 13251101 + 13251081 13251121 41 TCTGTTTCAGTAACTGTGGCCTCTACAAATGGGAACGGGAC TCTGTTTCAGTAACTGTGACCTCTACAAATGGGAACGGGAC < 41bp 1 0.315574805664326 1 0.750568389892578 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13251101 chr10:13251099 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_21001 0 0 1 0 2 Nucleus 1 0.500231318803593 0.498863220214844 0.999537362392813 hm5C_site_22071 DeepMRMD:0.498863220214844;iRNA_m5C:0.999537362392813 22072 chr10 13251099 13251099 1 + G A COAD 13251116 + 13251096 13251136 41 GTGGCCTCTACAAATGGGAACGGGACGGAATGCTAAAGGTA GTGACCTCTACAAATGGGAACGGGACGGAATGCTAAAGGTA < 41bp 1 0.539905930861604 1 0.600476145744324 experiment 0.920188138276793 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13251116 chr10:13251099 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_21002 0 0 1 0 2 Nucleus 1 0.500231643921092 0.799047708511352 0.999536712157815 hm5C_site_22072 DeepMRMD:0.799047708511352;iRNA_m5C:0.999536712157815 22073 chr8 56922493 56922493 1 + G A COAD 56922491 + 56922471 56922511 41 AACTAATGCCGACGTGATGACCGCCCTGTCCCAGGGCTACA AACTAATGCCGACGTGATGACCACCCTGTCCCAGGGCTACA < 41bp 1 0.152363927250803 1 0.019383430480957 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56922491 chr8:56922493 nonsynonymous SNV 0.979 2 23 hm5C_associated_SNPs_21003 0 0 1 0 1 Cytosol 1 0.500231653977316 1 0.999536692045369 hm5C_site_22073 DeepMRMD:1;iRNA_m5C:0.999536692045369 22074 chr5 92923702 92923702 1 + C T COAD 92923717 + 92923697 92923737 41 AACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT AACGGTCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT < 41bp 1 0.356195570970117 1 0.240815430879593 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92923717 chr5:92923702 synonymous SNV . 0 6 hm5C_associated_SNPs_21004 0 0 1 0 1 nucleus 1 0.500231644210018 1 0.999536711579965 hm5C_site_22074 DeepMRMD:1;iRNA_m5C:0.999536711579965 22075 chr7 40102523 40102523 1 + G A COAD 40102521 + 40102501 40102541 41 CCAGCCATTGATGTATGGAGCTGTGGGTAAGATAGCCTTAT CCAGCCATTGATGTATGGAGCTATGGGTAAGATAGCCTTAT < 41bp 1 0.147725652673597 1 0.362623661756516 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102521 chr7:40102523 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_21005 0 0 1 0 2 Nucleus 1 0.50023164392268 1 0.999536712154639 hm5C_site_22075 DeepMRMD:1;iRNA_m5C:0.999536712154639 22076 chr6 118015231 118015231 1 + G A COAD 118015223 + 118015203 118015243 41 GCCATTTGGCAGTGAAGGTGCTGTCTCCGGAAGATGGAAAA GCCATTTGGCAGTGAAGGTGCTGTCTCCAGAAGATGGAAAA < 41bp 1 0.186901530314668 1 0.104342639446259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUS1 ENSG00000153989 CDS Human protein_coding chr6:118015223 chr6:118015231 synonymous SNV . 0 29 hm5C_associated_SNPs_21006 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164390755 1 0.9995367121849 hm5C_site_22076 DeepMRMD:1;iRNA_m5C:0.9995367121849 22077 chr9 130164926 130164926 1 + C T COAD 130164924 + 130164904 130164944 41 ATGTGCTTCATGCCCGAGACCCCGCGCTTCCTGCTGACTCA ATGTGCTTCATGCCCGAGACCCTGCGCTTCCTGCTGACTCA < 41bp 1 0.117899085488609 1 0.0687520205974579 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A8 ENSG00000136856 CDS Human protein_coding chr9:130164924 chr9:130164926 nonsynonymous SNV 0.983 5 23 hm5C_associated_SNPs_21007 0 0 1 0 1 Endoplasmic reticulum 1 0.500231688274563 1 0.999536623450874 hm5C_site_22077 DeepMRMD:1;iRNA_m5C:0.999536623450874 22078 chr6 15511627 15511627 1 + G A COAD 15511609 + 15511589 15511629 41 CCAATGGCACCCCAGGGCTGCAGATGCTGGAAAGCAACGTC CCAATGGCACCCCAGGGCTGCAGATGCTGGAAAGCAACATC < 41bp 1 0.191178771582869 1 0.327233552932739 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15511609 chr6:15511627 nonsynonymous SNV 0.996 1 39 hm5C_associated_SNPs_21009 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22078 DeepMRMD:1;iRNA_m5C:0.999536712157815 22079 chr19 40883710 40883710 1 + C T COAD 40883722 + 40883702 40883742 41 GTGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGC GTGGTCCCTGCGGATGAGGCCCAGGCTCGAATCCCATATGC < 41bp 1 0.481993169237879 1 0.356693178415298 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883722 chr19:40883710 synonymous SNV . 0 9 hm5C_associated_SNPs_21010 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_22079 DeepMRMD:1;iRNA_m5C:0.999536712157818 22080 chr19 40883710 40883710 1 + C T COAD 40883723 + 40883703 40883743 41 TGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGCC TGGTCCCTGCGGATGAGGCCCAGGCTCGAATCCCATATGCC < 41bp 1 0.370856387276075 1 0.450406938791275 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883723 chr19:40883710 synonymous SNV . 0 8 hm5C_associated_SNPs_21011 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22080 DeepMRMD:1;iRNA_m5C:0.999536712157815 22081 chr19 13054434 13054434 1 + C T COAD 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGTGTAAC < 41bp 1 0.577656846599707 1 0.646363377571106 experiment 0.844686306800585 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054434 synonymous SNV . 0 36 hm5C_associated_SNPs_21012 0 0 1 0 2 Ribosome 1 0.500227939187933 0.707273244857788 0.999544121624133 hm5C_site_22081 DeepMRMD:0.707273244857788;iRNA_m5C:0.999544121624133 22082 chr19 13054434 13054434 1 + C T COAD 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGCAACGAGACGTGGGGTGTAACAAAGGTGA < 41bp 1 0.685814459330005 1 0.360713005065918 experiment 0.628371081339989 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054434 synonymous SNV . 0 28 hm5C_associated_SNPs_21013 0 0 1 0 2 Ribosome 1 0.500231643921104 1 0.999536712157793 hm5C_site_22082 DeepMRMD:1;iRNA_m5C:0.999536712157793 22083 chr12 112229168 112229168 1 + C T COAD 112229155 + 112229135 112229175 41 ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATT ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGTCGCCATT < 41bp 1 0.129495024665549 1 0.027579128742218 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229155 chr12:112229168 nonsynonymous SNV 0.169 2 34 hm5C_associated_SNPs_21014 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_22083 DeepMRMD:1;iRNA_m5C:0.999536712157815 22084 chr12 112229168 112229168 1 + C T COAD 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCACGGCTGGGGTCGCCATTG < 41bp 1 0.298295215756612 1 0.0642690062522888 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229156 chr12:112229168 nonsynonymous SNV 0.169 2 33 hm5C_associated_SNPs_21015 0 0 1 0 2 chromatin 1 0.500231643376521 1 0.999536713246957 hm5C_site_22084 DeepMRMD:1;iRNA_m5C:0.999536713246957 22085 chr20 44673678 44673678 1 + G A COAD 44673677 + 44673657 44673697 41 TCTCCATGGGTAATTGTCATCGGATCCTTCTTCTCCACCTG TCTCCATGGGTAATTGTCATCAGATCCTTCTTCTCCACCTG < 41bp 1 0.500217797052004 1 0.580166399478912 experiment 0.999564405895991 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44673677 chr20:44673678 nonsynonymous SNV 0.976 5 22 hm5C_associated_SNPs_21018 0 0 0 0 1 cytosol 1 0.500231583973304 0.839667201042176 0.999536832053392 hm5C_site_22085 DeepMRMD:0.839667201042176;iRNA_m5C:0.999536832053392 22086 chr2 74315075 74315075 1 + G A COAD 74315067 + 74315047 74315087 41 CTCATCCTGGCCTGGGAGGGCATTCCCCGTAGCCTCGGAGA CTCATCCTGGCCTGGGAGGGCATTCCCCATAGCCTCGGAGA < 41bp 1 0.0241474503354726 1 0.0900512039661407 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74315067 chr2:74315075 nonsynonymous SNV 0.997 1 29 hm5C_associated_SNPs_21019 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_22086 DeepMRMD:1;iRNA_m5C:0.999536712157815 22087 chr17 4923886 4923886 1 + C T COAD 4923870 + 4923850 4923890 41 TGGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACCGCCC TGGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACTGCCC < 41bp 1 0.111662064466374 1 0.067194938659668 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4923870 chr17:4923886 nonsynonymous SNV 0.949 1 37 hm5C_associated_SNPs_21020 0 0 1 0 2 Ribosome 1 0.500231645063209 1 0.999536709873582 hm5C_site_22087 DeepMRMD:1;iRNA_m5C:0.999536709873582 22088 chr16 57171187 57171187 1 + C T COAD 57171175 + 57171155 57171195 41 CCGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGG CCGGTTTGCGGCCCAGGCCACACAACAGCGGATGGCCACGG < 41bp 1 0.636298487921362 1 0.233324527740479 experiment 0.727403024157276 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57171175 chr16:57171187 nonsynonymous SNV 0.749 0 33 hm5C_associated_SNPs_21021 0 0 1 0 1 chromatin 1 0.500231645567753 1 0.999536708864494 hm5C_site_22088 DeepMRMD:1;iRNA_m5C:0.999536708864494 22089 chr13 88329602 88329602 1 + C T COAD 88329589 + 88329569 88329609 41 GTTGAATAGCACCGGGGCCCCCGCGAGCTTGGGCGCAGGCG GTTGAATAGCACCGGGGCCCCCGCGAGCTTGGGTGCAGGCG < 41bp 1 0.600270173675659 1 0.302805185317993 experiment 0.799459652648682 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88329589 chr13:88329602 synonymous SNV . 0 34 hm5C_associated_SNPs_21023 0 0 0 0 0 nucleus 1 0.500231643921014 1 0.999536712157973 hm5C_site_22089 DeepMRMD:1;iRNA_m5C:0.999536712157973 22090 chr17 4859401 4859401 1 + G A COAD 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGAT < 41bp 1 0.512370927814856 1 0.0810806453227997 experiment 0.975258144370288 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859401 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_21024 0 0 1 0 2 nucleus 1 0.500231643884398 1 0.999536712231203 hm5C_site_22090 DeepMRMD:1;iRNA_m5C:0.999536712231203 22091 chr17 4859401 4859401 1 + G A COAD 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGATCAA < 41bp 1 0.439739992267118 1 0.135647833347321 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859401 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_21025 0 0 1 0 2 nucleus 1 0.500231643471257 1 0.999536713057487 hm5C_site_22091 DeepMRMD:1;iRNA_m5C:0.999536713057487 22092 chr17 4859401 4859401 1 + G A COAD 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGCAACTGTCTGCTGCTGAAGATCAACCAGATC < 41bp 1 0.416857295537955 1 0.202319979667664 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859401 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_21027 0 0 1 0 2 nucleus 1 0.500231642984374 1 0.999536714031252 hm5C_site_22092 DeepMRMD:1;iRNA_m5C:0.999536714031252 22093 chr17 4859401 4859401 1 + G A COAD 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AACTGTCTGCTGCTGAAGATCAACCAGATCGGCTCGGTGAC < 41bp 1 0.487378685846739 1 0.338927328586578 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859401 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_21028 0 0 1 0 2 nucleus 1 0.500231643920869 1 0.999536712158262 hm5C_site_22093 DeepMRMD:1;iRNA_m5C:0.999536712158262 22094 chr9 131830103 131830103 1 + C T COAD 131830119 + 131830099 131830139 41 CCTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG CCTGTGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG < 41bp 1 0.203628421906195 1 0.114457696676254 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830119 chr9:131830103 nonsynonymous SNV 0.988 4 5 hm5C_associated_SNPs_21030 0 0 1 0 2 unknown 1 0.500231643921115 1 0.999536712157771 hm5C_site_22094 DeepMRMD:1;iRNA_m5C:0.999536712157771 22095 chr9 131830103 131830103 1 + C T COAD 131830120 + 131830100 131830140 41 CTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA CTGTGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA < 41bp 1 0.390649495558351 1 0.221457451581955 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830120 chr9:131830103 nonsynonymous SNV 0.988 4 4 hm5C_associated_SNPs_21031 0 0 1 0 2 unknown 1 0.500231643945937 1 0.999536712108125 hm5C_site_22095 DeepMRMD:1;iRNA_m5C:0.999536712108125 22096 chr5 176083806 176083806 1 + G A COAD 176083814 + 176083794 176083834 41 TTCATGGGCATCGCCCTCCTCCAGGTACCCTTGTGGCCCCA TTCATGGGCATCACCCTCCTCCAGGTACCCTTGTGGCCCCA < 41bp 1 0.649080559064239 1 0.921611070632935 experiment 0.701838881871522 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176083814 chr5:176083806 nonsynonymous SNV 0.839 4 13 hm5C_associated_SNPs_21032 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.15677785873413 0.999536712157816 hm5C_site_22096 DeepMRMD:0.15677785873413;iRNA_m5C:0.999536712157816 22097 chr7 150761825 150761825 1 + T C COAD 150761806 + 150761786 150761826 41 GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGCC < 41bp 1 0.561524691885148 1 0.50299471616745 experiment 0.876950616229704 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761806 chr7:150761825 nonsynonymous SNV 0.001 0 40 hm5C_associated_SNPs_21033 0 0 1 0 1 Ribosome 1 0.500231643921093 0.9940105676651 0.999536712157815 hm5C_site_22097 DeepMRMD:0.9940105676651;iRNA_m5C:0.999536712157815 22098 chr10 43289388 43289388 1 + C T COAD 43289408 + 43289388 43289428 41 CGCTGTTTTCTGATTCCAAGCCACTTGGGTCAGAGGATATA TGCTGTTTTCTGATTCCAAGCCACTTGGGTCAGAGGATATA < 41bp 1 0.120987324027558 1 0.0545578896999359 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43289408 chr10:43289388 nonsynonymous SNV 0.503 1 1 hm5C_associated_SNPs_21034 0 0 1 0 1 chromatin 1 0.500231643956108 1 0.999536712087783 hm5C_site_22098 DeepMRMD:1;iRNA_m5C:0.999536712087783 22099 chr16 29993194 29993194 1 + G A COAD 29993182 + 29993162 29993202 41 CCCTCCTGTGACTTTCAGGTCTGAGTACTTCCGGAATTTTG CCCTCCTGTGACTTTCAGGTCTGAGTACTTCCAGAATTTTG < 41bp 1 0.311925939726053 1 0.25924351811409 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29993182 chr16:29993194 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_21035 0 0 1 0 2 Nucleus 1 0.500231643922724 1 0.999536712154551 hm5C_site_22099 DeepMRMD:1;iRNA_m5C:0.999536712154551 22100 chr12 56863100 56863100 1 + C A COAD 56863112 + 56863092 56863132 41 GATCGTTCCTGGGTGTTCACCTATGCCCAGCGCAAGTGGTA GATCGTTCATGGGTGTTCACCTATGCCCAGCGCAAGTGGTA < 41bp 1 0.350172329570441 1 0.200330644845963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPRYD4 ENSG00000176422 CDS Human protein_coding chr12:56863112 chr12:56863100 synonymous SNV . 0 9 hm5C_associated_SNPs_21036 0 0 1 0 0 Cytosol 1 0.500091079654268 1 0.999817840691464 hm5C_site_22100 DeepMRMD:1;iRNA_m5C:0.999817840691464 22101 chr7 4824629 4824629 1 + G A COAD 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCAG < 41bp 1 0.180158061336505 1 0.217550188302994 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824629 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_21038 2 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_22101 DeepMRMD:1;iRNA_m5C:0.999536712157815 Spastic Paraplegia, Recessive Spastic Paraplegia, Recessive 22102 chr19 50753904 50753904 1 + C T COAD 50753921 + 50753901 50753941 41 CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCGGG CTGTGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCGGG < 41bp 1 0.665564016097385 1 0.555975437164307 experiment 0.66887196780523 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753921 chr19:50753904 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_21039 0 0 0 0 1 cytosol 1 0.500231643933128 0.888049125671386 0.999536712133744 hm5C_site_22102 DeepMRMD:0.888049125671386;iRNA_m5C:0.999536712133744 22103 chr9 96026308 96026308 1 + C T COAD 96026292 + 96026272 96026312 41 TCGACTTGGACGGGGACGCACCCGATGAAATTGCCACGTAT TCGACTTGGACGGGGACGCACCCGATGAAATTGCCATGTAT < 41bp 1 0.435376478654015 1 0.468665450811386 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96026292 chr9:96026308 nonsynonymous SNV 0.129 4 37 hm5C_associated_SNPs_21040 0 0 1 0 1 Nucleus 1 0.500231644608074 1 0.999536710783852 hm5C_site_22103 DeepMRMD:1;iRNA_m5C:0.999536710783852 22104 chr5 151183531 151183531 1 + G A COAD 151183550 + 151183530 151183570 41 CGCCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGG CACCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGG < 41bp 1 0.314315508520506 1 0.451910495758057 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control G3BP1 ENSG00000145907 CDS Human protein_coding chr5:151183550 chr5:151183531 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_21041 0 0 1 0 1 Cytosol 1 0.500231512041578 1 0.999536975916845 hm5C_site_22104 DeepMRMD:1;iRNA_m5C:0.999536975916845 22105 chr11 252542 252542 1 + C T COAD 252522 + 252502 252542 41 CAGATCAAGGGAATGAAGGACCGCCTGGAGTTCTGGTGCAC CAGATCAAGGGAATGAAGGACCGCCTGGAGTTCTGGTGCAT < 41bp 1 0.157428248276569 1 0.216649830341339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:252522 chr11:252542 nonsynonymous SNV 0.730 2 41 hm5C_associated_SNPs_21042 0 0 1 0 1 Ribosome 1 0.500228383383583 1 0.999543233232834 hm5C_site_22105 DeepMRMD:1;iRNA_m5C:0.999543233232834 22106 chr11 252542 252542 1 + C T COAD 252540 + 252520 252560 41 GACCGCCTGGAGTTCTGGTGCACGGATGTGAAGAGCATGGA GACCGCCTGGAGTTCTGGTGCATGGATGTGAAGAGCATGGA < 41bp 1 0.584686128768553 1 0.0806431174278259 experiment 0.830627742462894 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:252540 chr11:252542 nonsynonymous SNV 0.730 2 23 hm5C_associated_SNPs_21043 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22106 DeepMRMD:1;iRNA_m5C:0.999536712157815 22107 chr19 14153385 14153385 1 + G A COAD 14153384 + 14153364 14153404 41 AAAGAAGAGGATTTGTGGGGCGAGTGGAGCCCCATTTTGTC AAAGAAGAGGATTTGTGGGGCAAGTGGAGCCCCATTTTGTC < 41bp 1 0.282762824227795 1 0.411930561065674 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153384 chr19:14153385 nonsynonymous SNV 0.707 1 22 hm5C_associated_SNPs_21044 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_22107 DeepMRMD:1;iRNA_m5C:0.999536712157815 22108 chr19 14153385 14153385 1 + G A COAD 14153393 + 14153373 14153413 41 GATTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGAC GATTTGTGGGGCAAGTGGAGCCCCATTTTGTCCTTCCAGAC < 41bp 1 0.393260691172067 1 0.16132190823555 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153393 chr19:14153385 nonsynonymous SNV 0.707 1 13 hm5C_associated_SNPs_21045 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_22108 DeepMRMD:1;iRNA_m5C:0.999536712157815 22109 chr19 14153385 14153385 1 + G A COAD 14153394 + 14153374 14153414 41 ATTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACA ATTTGTGGGGCAAGTGGAGCCCCATTTTGTCCTTCCAGACA < 41bp 1 0.197076127125055 1 0.156873673200607 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153394 chr19:14153385 nonsynonymous SNV 0.707 1 12 hm5C_associated_SNPs_21046 0 0 0 0 1 chromatin 1 0.500231643919166 1 0.999536712161668 hm5C_site_22109 DeepMRMD:1;iRNA_m5C:0.999536712161668 22110 chr19 14153385 14153385 1 + G A COAD 14153395 + 14153375 14153415 41 TTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACAC TTTGTGGGGCAAGTGGAGCCCCATTTTGTCCTTCCAGACAC < 41bp 1 0.161969668501273 1 0.0441607534885406 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153395 chr19:14153385 nonsynonymous SNV 0.707 1 11 hm5C_associated_SNPs_21047 0 0 0 0 1 chromatin 1 0.500231643921184 1 0.999536712157632 hm5C_site_22110 DeepMRMD:1;iRNA_m5C:0.999536712157632 22111 chr19 14153385 14153385 1 + G A COAD 14153396 + 14153376 14153416 41 TTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACC TTGTGGGGCAAGTGGAGCCCCATTTTGTCCTTCCAGACACC < 41bp 1 0.0603075687963875 1 0.0561413168907166 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153396 chr19:14153385 nonsynonymous SNV 0.707 1 10 hm5C_associated_SNPs_21048 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_22111 DeepMRMD:1;iRNA_m5C:0.999536712157815 22112 chr6 3225760 3225760 1 + G A COAD 3225752 - 3225732 3225772 41 ACGCCACCCTCTCGGTCCACCAGCTGGTGGAAAACACAGAT ACGCCACCCTCTTGGTCCACCAGCTGGTGGAAAACACAGAT < 41bp 1 0.366186650552845 1 0.668029189109802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TUBB2B ENSG00000137285 CDS Human protein_coding chr6:3225752 chr6:3225760 nonsynonymous SNV 0.362 3 13 hm5C_associated_SNPs_21049 0 0 0 0 0 exosome 1 0.500231646627848 0.663941621780396 0.999536706744304 hm5C_site_22112 DeepMRMD:0.663941621780396;iRNA_m5C:0.999536706744304 22113 chr16 56501908 56501908 1 + T A COAD 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAGAAAGTTCTGAAAATCTCCTGAAGGAGTTTCTTAAG < 41bp 1 0.608562684413246 1 0.906788408756256 experiment 0.782874631173508 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501908 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_21050 0 0 1 0 2 Ribosome 1 0.500231643921092 0.186423182487488 0.999536712157815 hm5C_site_22113 DeepMRMD:0.186423182487488;iRNA_m5C:0.999536712157815 22114 chr19 14153416 14153416 1 + C T COAD 14153396 + 14153376 14153416 41 TTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACC TTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACT < 41bp 1 0.0593762224868444 1 0.0562309920787811 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153396 chr19:14153416 nonsynonymous SNV 0.012 0 41 hm5C_associated_SNPs_21051 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_22114 DeepMRMD:1;iRNA_m5C:0.999536712157815 22115 chr4 38117447 38117447 1 + G T COAD 38117444 + 38117424 38117464 41 ACCAGGAAGTGGGATATTGCCAAGGTCTCAGCTTTGTAGCA ACCAGGAAGTGGGATATTGCCAATGTCTCAGCTTTGTAGCA < 41bp 1 0.417101741383739 1 0.793797731399536 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38117444 chr4:38117447 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_21052 0 0 1 0 0 Nucleus 1 0.500231643803572 0.412404537200928 0.999536712392856 hm5C_site_22115 DeepMRMD:0.412404537200928;iRNA_m5C:0.999536712392856 22116 chr3 66430821 66430821 1 + C T COAD 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCGCACGGAAGCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.480578340439052 1 0.22758537530899 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430821 nonsynonymous SNV 0.000 0 12 hm5C_associated_SNPs_21054 0 0 0 0 1 Ribosome 1 0.500231643921054 1 0.999536712157892 hm5C_site_22116 DeepMRMD:1;iRNA_m5C:0.999536712157892 22117 chr16 77228826 77228826 1 + G A COAD 77228810 + 77228790 77228830 41 CTATGCCTGTCTGCCTGCTGCTGCTTGGCACCCAACGTGAA CTATGCCTGTCTGCCTGCTGCTGCTTGGCACCCAACATGAA < 41bp 1 0.299844019793565 1 0.31962651014328 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MON1B ENSG00000103111 CDS Human protein_coding chr16:77228810 chr16:77228826 nonsynonymous SNV 0.198 3 37 hm5C_associated_SNPs_21055 0 0 1 0 0 Ribosome 1 0.50024326733922 1 0.999513465321559 hm5C_site_22117 DeepMRMD:1;iRNA_m5C:0.999513465321559 22118 chr5 140182605 140182605 1 + C T COAD 140182596 + 140182576 140182616 41 TGCAGACTCAGGCTACAACGCGTGGCTTTCGTATGAGCTGC TGCAGACTCAGGCTACAACGCGTGGCTTTTGTATGAGCTGC < 41bp 1 0.415920380301996 1 0.466295301914215 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PCDHA3 ENSG00000255408 CDS Human protein_coding chr5:140182596 chr5:140182605 nonsynonymous SNV 0.055 2 30 hm5C_associated_SNPs_21056 0 0 0 0 0 insoluble cytoplasm 1 0.500231646731383 1 0.999536706537234 hm5C_site_22118 DeepMRMD:1;iRNA_m5C:0.999536706537234 22119 chr19 4493761 4493761 1 + C T COAD 4493768 + 4493748 4493788 41 GCCAAGCCTGAGCCGGTGGCCATGGCGCGGTCGGCGTCCTC GCCAAGCCTGAGCTGGTGGCCATGGCGCGGTCGGCGTCCTC < 41bp 1 0.396870204314031 1 0.390543162822723 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4493768 chr19:4493761 nonsynonymous SNV 0.021 0 14 hm5C_associated_SNPs_21057 0 0 1 0 2 unknown 1 0.500231643920963 1 0.999536712158074 hm5C_site_22119 DeepMRMD:1;iRNA_m5C:0.999536712158074 22120 chr1 26136187 26136187 1 + T C COAD 26136177 + 26136157 26136197 41 GATCCCCTTCCCCACAGGATCCATGCCGAGTTCCAGCTCAG GATCCCCTTCCCCACAGGATCCATGCCGAGCTCCAGCTCAG < 41bp 1 0.128509730333239 1 0.0390692353248596 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136177 chr1:26136187 nonsynonymous SNV 0.983 5 31 hm5C_associated_SNPs_21058 0 0 1 0 1 unknown 1 0.50023164195102 1 0.99953671609796 hm5C_site_22120 DeepMRMD:1;iRNA_m5C:0.99953671609796 22121 chr19 17615407 17615407 1 + G A COAD 17615397 + 17615377 17615417 41 GAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTCGCCCT GAGGCAGTCTACACTCGCATCTGCTCGGGCACCTTCGCCCT < 41bp 1 0.343701421631552 1 0.268228888511658 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17615397 chr19:17615407 nonsynonymous SNV 0.020 0 31 hm5C_associated_SNPs_21059 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921422 1 0.999536712157156 hm5C_site_22121 DeepMRMD:1;iRNA_m5C:0.999536712157156 22122 chr16 560768 560768 1 + G A COAD 560748 + 560728 560768 41 CCCGGCGTCAGAAGGAGCTCCTGTGCAAGATGGAGAGGGAG CCCGGCGTCAGAAGGAGCTCCTGTGCAAGATGGAGAGGGAA < 41bp 1 0.139461976833476 1 0.47238028049469 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:560748 chr16:560768 synonymous SNV . 0 41 hm5C_associated_SNPs_21060 0 0 1 0 1 Ribosome 1 0.500228671626173 1 0.999542656747654 hm5C_site_22122 DeepMRMD:1;iRNA_m5C:0.999542656747654 22123 chr16 3458653 3458653 1 + C A COAD 3458648 + 3458628 3458668 41 GCAACATCTTGGTCACCAGCCCACCCGCTCAGCAAAGAAAC GCAACATCTTGGTCACCAGCCCACCAGCTCAGCAAAGAAAC < 41bp 1 0.0806575344643827 1 0.181438207626343 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF174 ENSG00000103343 CDS Human protein_coding chr16:3458648 chr16:3458653 nonsynonymous SNV 0.457 0 26 hm5C_associated_SNPs_21061 0 0 0 0 0 Ribosome 1 0.50023164469764 1 0.99953671060472 hm5C_site_22123 DeepMRMD:1;iRNA_m5C:0.99953671060472 22124 chr19 46887123 46887123 1 + G A COAD 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAAAC < 41bp 1 0.566939323563152 1 0.114431500434875 experiment 0.866121352873696 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887123 synonymous SNV . 0 39 hm5C_associated_SNPs_21062 0 0 1 0 3 Ribosome 1 0.500231643921088 1 0.999536712157824 hm5C_site_22124 DeepMRMD:1;iRNA_m5C:0.999536712157824 22125 chr5 140481754 140481754 1 + C T COAD 140481767 + 140481747 140481787 41 CCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCG CCATCAATGCGGACAACGGCCACCTGTTTGCCCTCAGGTCG < 41bp 1 0.690152044937466 1 0.162643224000931 experiment 0.619695910125067 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140481767 chr5:140481754 synonymous SNV . 0 8 hm5C_associated_SNPs_21063 0 0 0 0 0 exosome 1 0.500231638550597 1 0.999536722898806 hm5C_site_22125 DeepMRMD:1;iRNA_m5C:0.999536722898806 22126 chr19 39948328 39948328 1 + G A COAD 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAATATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.265752361855078 1 0.173847705125809 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948328 synonymous SNV . 0 6 hm5C_associated_SNPs_21064 0 0 1 0 2 Nucleus 1 0.500231643922813 1 0.999536712154373 hm5C_site_22126 DeepMRMD:1;iRNA_m5C:0.999536712154373 22127 chr19 39948328 39948328 1 + G A COAD 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAATATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG < 41bp 1 0.506813531501027 1 0.241517126560211 experiment 0.986372936997946 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948328 synonymous SNV . 0 5 hm5C_associated_SNPs_21065 0 0 1 0 2 Nucleus 1 0.500231682190561 1 0.999536635618877 hm5C_site_22127 DeepMRMD:1;iRNA_m5C:0.999536635618877 22128 chr7 40102463 40102463 1 + G A COAD 40102465 + 40102445 40102485 41 TAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGA TAATTACTTTATGGTACCATCCACCTGAACTGCTACTGGGA < 41bp 1 0.054628555742865 1 0.231039971113205 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102465 chr7:40102463 nonsynonymous SNV 0.997 3 19 hm5C_associated_SNPs_21066 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22128 DeepMRMD:1;iRNA_m5C:0.999536712157815 22129 chr2 73477030 73477030 1 + G A COAD 73477026 + 73477006 73477046 41 ATGCCAGGTGTTTGAAGAGACCCAGATTGGAGGCGAGAGGT ATGCCAGGTGTTTGAAGAGACCCAAATTGGAGGCGAGAGGT < 41bp 1 0.634384957480044 1 0.53596431016922 experiment 0.731230085039913 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73477026 chr2:73477030 synonymous SNV . 0 25 hm5C_associated_SNPs_21067 0 0 1 0 2 Cytosol 1 0.500231643934956 0.92807137966156 0.999536712130088 hm5C_site_22129 DeepMRMD:0.92807137966156;iRNA_m5C:0.999536712130088 22130 chr11 126215295 126215295 1 + G A COAD 126215278 + 126215258 126215298 41 GCTACCGGATGAAGGGAGACCATCTGCGAGTATACCTGCAC GCTACCGGATGAAGGGAGACCATCTGCGAGTATACCTACAC < 41bp 1 0.275698310126948 1 0.140413582324982 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126215278 chr11:126215295 synonymous SNV . 0 38 hm5C_associated_SNPs_21068 0 0 1 0 1 Ribosome 1 0.500235009059684 1 0.999529981880631 hm5C_site_22130 DeepMRMD:1;iRNA_m5C:0.999529981880631 22131 chr10 94449947 94449947 1 + G A COAD 94449964 + 94449944 94449984 41 CCCGGTGTACGAGCCCACGCCGATCCATCCAGCCTTCTCGC CCCAGTGTACGAGCCCACGCCGATCCATCCAGCCTTCTCGC < 41bp 1 0.347931389434273 1 0.236024051904678 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HHEX ENSG00000152804 CDS Human protein_coding chr10:94449964 chr10:94449947 synonymous SNV . 0 4 hm5C_associated_SNPs_21069 0 0 1 0 0 cytosol 1 0.5002336187745 1 0.999532762451 hm5C_site_22131 DeepMRMD:1;iRNA_m5C:0.999532762451 22132 chr11 61503230 61503230 1 + C T COAD 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGACCTGATGGGTGATGCTGAGCG < 41bp 1 0.308497663031281 1 0.0694326758384705 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503230 nonsynonymous SNV 0.945 4 26 hm5C_associated_SNPs_21070 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921096 1 0.999536712157809 hm5C_site_22132 DeepMRMD:1;iRNA_m5C:0.999536712157809 22133 chr9 140002996 140002996 1 + G A COAD 140002991 + 140002971 140003011 41 AAACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAG AAACCTGCTCAGCCTGGATGCCTACATGTTCAACACCGAAG < 41bp 1 0.0360146267422742 1 0.313847064971924 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002991 chr9:140002996 nonsynonymous SNV 0.817 4 26 hm5C_associated_SNPs_21071 0 0 1 1 0 Ribosome 1 0.500231486823753 1 0.999537026352494 hm5C_site_22133 DeepMRMD:1;iRNA_m5C:0.999537026352494 22134 chr9 140002996 140002996 1 + G A COAD 140002992 + 140002972 140003012 41 AACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAGC AACCTGCTCAGCCTGGATGCCTACATGTTCAACACCGAAGC < 41bp 1 0.649746302993845 1 0.47085976600647 experiment 0.700507394012309 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002992 chr9:140002996 nonsynonymous SNV 0.817 4 25 hm5C_associated_SNPs_21072 0 0 1 1 0 Ribosome 1 0.500231644294619 1 0.999536711410762 hm5C_site_22134 DeepMRMD:1;iRNA_m5C:0.999536711410762 22135 chr15 29346701 29346701 1 + C T COAD 29346699 + 29346679 29346719 41 CCCGAGGAGGCCAACGGGAACACCGGCGCCTCCCCCTACCG CCCGAGGAGGCCAACGGGAACATCGGCGCCTCCCCCTACCG < 41bp 1 0.510479479105221 1 0.215628504753113 experiment 0.979041041789558 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control APBA2 ENSG00000034053 CDS Human protein_coding chr15:29346699 chr15:29346701 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_21073 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22135 DeepMRMD:1;iRNA_m5C:0.999536712157815 22136 chr19 4037381 4037381 1 + G A COAD 4037380 + 4037360 4037400 41 GCCTCGCCCCAGGCTCCTCTCGAAGATCCTGAGCGAGTGTG GCCTCGCCCCAGGCTCCTCTCAAAGATCCTGAGCGAGTGTG < 41bp 1 0.506254036679483 1 0.174300372600555 experiment 0.987491926641035 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4037380 chr19:4037381 synonymous SNV . 0 22 hm5C_associated_SNPs_21075 0 0 1 0 1 chromatin 1 0.500231643921102 1 0.999536712157797 hm5C_site_22136 DeepMRMD:1;iRNA_m5C:0.999536712157797 22137 chr12 56532018 56532018 1 + C T COAD 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGTG < 41bp 1 0.0615347657234708 1 0.521020352840424 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56532018 nonsynonymous SNV 0.974 0 40 hm5C_associated_SNPs_21076 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921094 0.957959294319152 0.999536712157813 hm5C_site_22137 DeepMRMD:0.957959294319152;iRNA_m5C:0.999536712157813 22138 chr12 56532018 56532018 1 + C T COAD 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGTGT < 41bp 1 0.502852179754615 1 0.540765821933746 experiment 0.99429564049077 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56532018 nonsynonymous SNV 0.974 0 39 hm5C_associated_SNPs_21077 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921105 0.918468356132508 0.99953671215779 hm5C_site_22138 DeepMRMD:0.918468356132508;iRNA_m5C:0.99953671215779 22139 chr19 3151799 3151799 1 + G A COAD 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCGCATGCCCACCACTGGCATCAACAAGTACTG < 41bp 1 0.369162467765529 1 0.0591885149478912 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151799 nonsynonymous SNV 0.998 5 34 hm5C_associated_SNPs_21078 0 0 0 0 2 exosome 1 0.500231643974378 1 0.999536712051244 hm5C_site_22139 DeepMRMD:1;iRNA_m5C:0.999536712051244 22140 chr12 101674904 101674904 1 + T G COAD 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATGTGCTGAACGACTGGGGAATGTTAATATTGAT < 41bp 1 0.372653390918184 1 0.273505926132202 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674904 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_21079 0 0 1 0 2 Cytosol 1 0.500231645114096 1 0.999536709771808 hm5C_site_22140 DeepMRMD:1;iRNA_m5C:0.999536709771808 22141 chr12 112321465 112321465 1 + C T COAD 112321470 + 112321450 112321490 41 CTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAA CTCCAAACACCACAGTCGGACTATCCCAAAGGATATGCGAA < 41bp 1 0.039787094541236 1 0.153089553117752 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321470 chr12:112321465 synonymous SNV . 0 16 hm5C_associated_SNPs_21080 0 0 1 0 1 chromatin 1 0.500231643921117 1 0.999536712157766 hm5C_site_22141 DeepMRMD:1;iRNA_m5C:0.999536712157766 22142 chr1 171501776 171501776 1 + C T COAD 171501758 + 171501738 171501778 41 AGGAAATTAGGGAAAGGGAGCGAGAAAAAGAACGGGAGCGT AGGAAATTAGGGAAAGGGAGCGAGAAAAAGAACGGGAGTGT < 41bp 1 0.582383249868934 1 0.748041808605194 experiment 0.835233500262132 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171501758 chr1:171501776 nonsynonymous SNV 0.954 2 39 hm5C_associated_SNPs_21082 0 0 1 0 0 Cytosol 1 0.500230553118079 0.503916382789612 0.999538893763842 hm5C_site_22142 DeepMRMD:0.503916382789612;iRNA_m5C:0.999538893763842 22143 chr22 31266628 31266628 1 + C T COAD 31266632 + 31266612 31266652 41 GAAGGTGGTGAATGAGCGGGCCACCCTCTTCCGCATCACAT GAAGGTGGTGAATGAGTGGGCCACCCTCTTCCGCATCACAT < 41bp 1 0.0564111538786829 1 0.1009401679039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31266632 chr22:31266628 nonsynonymous SNV 0.986 4 17 hm5C_associated_SNPs_21083 0 0 0 0 1 Cytosol 1 0.500231643920982 1 0.999536712158036 hm5C_site_22143 DeepMRMD:1;iRNA_m5C:0.999536712158036 22144 chr19 39911719 39911719 1 + G A COAD 39911718 + 39911698 39911738 41 CTGTGTCCTCCCCGCAGAGCCGGTGAAGGACCCTTATGTCA CTGTGTCCTCCCCGCAGAGCCAGTGAAGGACCCTTATGTCA < 41bp 1 0.285209219640567 1 0.488523125648499 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39911718 chr19:39911719 synonymous SNV . 0 22 hm5C_associated_SNPs_21084 0 0 1 0 2 Nucleus 1 0.500231640253929 1 0.999536719492142 hm5C_site_22144 DeepMRMD:1;iRNA_m5C:0.999536719492142 22145 chr2 118582628 118582628 1 + A G COAD 118582619 + 118582599 118582639 41 CTTCTTTTCATCTTGTATGTCTGTGAAATACCACTATGAGT CTTCTTTTCATCTTGTATGTCTGTGAAATGCCACTATGAGT < 41bp 1 0.390476453675902 1 0.164324015378952 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582619 chr2:118582628 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_21085 0 0 1 0 1 Nucleus 1 0.500230670090655 1 0.999538659818691 hm5C_site_22145 DeepMRMD:1;iRNA_m5C:0.999538659818691 22146 chr7 5269320 5269320 1 + C T COAD 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCCCTTAGTCACTCAGACATACGGTGCAGCTGCAGGAA < 41bp 1 0.122744346055699 1 0.0646177232265472 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269320 synonymous SNV . 0 28 hm5C_associated_SNPs_21086 0 0 1 0 3 Cytosol 1 0.500231643998937 1 0.999536712002126 hm5C_site_22146 DeepMRMD:1;iRNA_m5C:0.999536712002126 22147 chr2 36668428 36668428 1 + G A COAD 36668446 + 36668426 36668466 41 CCGCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT CCACTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT < 41bp 1 0.663865056206047 1 0.713518142700195 experiment 0.672269887587907 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668446 chr2:36668428 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_21089 0 0 1 0 1 Nucleus 1 0.500231643921477 0.57296371459961 0.999536712157047 hm5C_site_22147 DeepMRMD:0.57296371459961;iRNA_m5C:0.999536712157047 22148 chr2 36668428 36668428 1 + G A COAD 36668448 + 36668428 36668468 41 GCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATTCT ACTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATTCT < 41bp 1 0.515288136804075 1 0.566323399543762 experiment 0.96942372639185 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668448 chr2:36668428 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_21090 0 0 1 0 1 Nucleus 1 0.500231643924767 0.867353200912476 0.999536712150466 hm5C_site_22148 DeepMRMD:0.867353200912476;iRNA_m5C:0.999536712150466 22149 chr21 46888602 46888602 1 + A C COAD 46888598 + 46888578 46888618 41 TACGTGGACTGTGAGGAGTTCCAGAGAATGCCGCTTGCTCG TACGTGGACTGTGAGGAGTTCCAGCGAATGCCGCTTGCTCG < 41bp 1 0.120791370316417 1 0.561692655086517 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46888598 chr21:46888602 synonymous SNV . 0 25 hm5C_associated_SNPs_21091 0 0 1 0 1 Nucleus 1 0.500231635888856 0.876614689826966 0.999536728222288 hm5C_site_22149 DeepMRMD:0.876614689826966;iRNA_m5C:0.999536728222288 22150 chr1 22331997 22331997 1 + A G COAD 22331980 + 22331960 22332000 41 AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCGTCG < 41bp 1 0.548854185495008 1 0.200711905956268 experiment 0.902291629009984 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331980 chr1:22331997 nonsynonymous SNV 0.028 0 38 hm5C_associated_SNPs_21093 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164489477 1 0.999536710210461 hm5C_site_22150 DeepMRMD:1;iRNA_m5C:0.999536710210461 22151 chr1 22331997 22331997 1 + A G COAD 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACGTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGT < 41bp 1 0.21359435555934 1 0.0776982605457306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22331997 nonsynonymous SNV 0.028 0 25 hm5C_associated_SNPs_21095 0 0 0 0 2 Endoplasmic reticulum 1 0.50023213889065 1 0.9995357222187 hm5C_site_22151 DeepMRMD:1;iRNA_m5C:0.9995357222187 22152 chr1 22331997 22331997 1 + A G COAD 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACGTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGT < 41bp 1 0.435404680005316 1 0.291360974311829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22331997 nonsynonymous SNV 0.028 0 22 hm5C_associated_SNPs_21097 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392342 1 0.99953671215316 hm5C_site_22152 DeepMRMD:1;iRNA_m5C:0.99953671215316 22153 chr1 22331997 22331997 1 + A G COAD 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACGTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGAC < 41bp 1 0.394736563015581 1 0.474165946245193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22331997 nonsynonymous SNV 0.028 0 19 hm5C_associated_SNPs_21098 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22153 DeepMRMD:1;iRNA_m5C:0.999536712157815 22154 chr1 22331997 22331997 1 + A G COAD 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG GTGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTG < 41bp 1 0.359043760247477 1 0.257616221904755 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22331997 nonsynonymous SNV 0.028 0 17 hm5C_associated_SNPs_21099 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644705937 1 0.999536710588127 hm5C_site_22154 DeepMRMD:1;iRNA_m5C:0.999536710588127 22155 chr1 22331997 22331997 1 + A G COAD 22332002 + 22331982 22332022 41 TGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGC TGTGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTGC < 41bp 1 0.603362161684656 1 0.732857584953308 experiment 0.793275676630688 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332002 chr1:22331997 nonsynonymous SNV 0.028 0 16 hm5C_associated_SNPs_21100 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643926116 0.534284830093384 0.999536712147767 hm5C_site_22155 DeepMRMD:0.534284830093384;iRNA_m5C:0.999536712147767 22156 chr1 22331997 22331997 1 + A G COAD 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTGCCG < 41bp 1 0.224103596850803 1 0.083147257566452 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22331997 nonsynonymous SNV 0.028 0 14 hm5C_associated_SNPs_21102 0 0 0 0 2 Endoplasmic reticulum 1 0.500231642383716 1 0.999536715232568 hm5C_site_22156 DeepMRMD:1;iRNA_m5C:0.999536715232568 22157 chr1 22331997 22331997 1 + A G COAD 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCGTCGCCCCCGATTGGGTTGTGACTGCCGG < 41bp 1 0.452735000697728 1 0.433496713638306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22331997 nonsynonymous SNV 0.028 0 13 hm5C_associated_SNPs_21103 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643937689 1 0.999536712124621 hm5C_site_22157 DeepMRMD:1;iRNA_m5C:0.999536712124621 22158 chr3 38417643 38417643 1 + G A COAD 38417623 + 38417603 38417643 41 TGCAGCTTTAAAAATGGCTCCCTCATGAGAGAGAAGATCCG TGCAGCTTTAAAAATGGCTCCCTCATGAGAGAGAAGATCCA < 41bp 1 0.0560589754263469 1 0.0736116170883179 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XYLB ENSG00000093217 CDS Human protein_coding chr3:38417623 chr3:38417643 nonsynonymous SNV 0.430 5 41 hm5C_associated_SNPs_21104 0 0 1 0 2 chromatin 1 0.500231646096845 1 0.99953670780631 hm5C_site_22158 DeepMRMD:1;iRNA_m5C:0.99953670780631 22159 chr15 100215617 100215617 1 + C T COAD 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC TACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC < 41bp 1 0.311373321025375 1 0.508222341537476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215617 synonymous SNV . 0 1 hm5C_associated_SNPs_21106 0 0 1 0 2 Endoplasmic reticulum 1 0.50023162529044 0.983555316925048 0.999536749419121 hm5C_site_22159 DeepMRMD:0.983555316925048;iRNA_m5C:0.999536749419121 22160 chr2 109347926 109347926 1 + T A COAD 109347910 + 109347890 109347930 41 CCAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAG CCAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACAAAAG < 41bp 1 0.043002639329474 1 0.173730224370956 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347910 chr2:109347926 nonsynonymous SNV 0.979 3 37 hm5C_associated_SNPs_21107 0 0 0 0 1 Nucleus 1 0.500231643921086 1 0.999536712157828 hm5C_site_22160 DeepMRMD:1;iRNA_m5C:0.999536712157828 22161 chr2 109347926 109347926 1 + T A COAD 109347911 + 109347891 109347931 41 CAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAGG CAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACAAAAGG < 41bp 1 0.307464975678996 1 0.289895057678223 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347911 chr2:109347926 nonsynonymous SNV 0.979 3 36 hm5C_associated_SNPs_21108 0 0 0 0 1 Nucleus 1 0.500231644155966 1 0.999536711688068 hm5C_site_22161 DeepMRMD:1;iRNA_m5C:0.999536711688068 22162 chr2 109347926 109347926 1 + T A COAD 109347925 + 109347905 109347945 41 GAAGTCCTGCAATTTATAAACTAAAGGTAAACAAACAAAAC GAAGTCCTGCAATTTATAAACAAAAGGTAAACAAACAAAAC < 41bp 1 0.477960630140224 1 0.56523472070694 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347925 chr2:109347926 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_21109 0 0 0 0 1 Nucleus 1 0.500238544033009 0.86953055858612 0.999522911933983 hm5C_site_22162 DeepMRMD:0.86953055858612;iRNA_m5C:0.999522911933983 22163 chr10 75871827 75871827 1 + C T COAD 75871841 + 75871821 75871861 41 TGGCCGCGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG TGGCCGTGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG < 41bp 1 0.339072780436454 1 0.120084375143051 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871841 chr10:75871827 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_21110 0 0 0 0 1 Nucleus 1 0.500231643853178 1 0.999536712293645 hm5C_site_22163 DeepMRMD:1;iRNA_m5C:0.999536712293645 22164 chr17 78318484 78318484 1 + C T COAD 78318498 + 78318478 78318518 41 CGTACACGTGTACCCCAGTTCAGTTTTCTTGACATCTTCCC CGTACATGTGTACCCCAGTTCAGTTTTCTTGACATCTTCCC < 41bp 1 0.0490730314911941 1 0.0280595719814301 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78318498 chr17:78318484 nonsynonymous SNV 0.002 0 7 hm5C_associated_SNPs_21111 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22164 DeepMRMD:1;iRNA_m5C:0.999536712157815 22165 chr1 45973941 45973941 1 + C T COAD 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATTGCTGACTACGAGGTGCACCCCAACCGATGCCCCAAG < 41bp 1 0.232376257133707 1 0.048687607049942 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973941 nonsynonymous SNV 0.977 5 33 hm5C_associated_SNPs_21112 1 0 1 0 2 Cytosol 1 0.500231643921867 1 0.999536712156267 hm5C_site_22165 DeepMRMD:1;iRNA_m5C:0.999536712156267 Disorders of Intracellular Cobalamin Metabolism Disorders of Intracellular Cobalamin Metabolism 22166 chr16 50261779 50261779 1 + G A COAD 50261765 + 50261745 50261785 41 GTTAGGATTCCGATGCAACACCATGCAAAACCCCGAAACAG GTTAGGATTCCGATGCAACACCATGCAAAACCCCAAAACAG < 41bp 1 0.224552192189938 1 0.608963489532471 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50261765 chr16:50261779 synonymous SNV . 0 35 hm5C_associated_SNPs_21113 0 0 1 0 1 Ribosome 1 0.50023168022091 0.782073020935058 0.999536639558179 hm5C_site_22166 DeepMRMD:0.782073020935058;iRNA_m5C:0.999536639558179 22167 chr15 40756131 40756131 1 + G A COAD 40756137 + 40756117 40756157 41 ACAATCCGAGTCCGGGACACCGTCCTTCTCAAATCAGGCCC ACAATCCGAGTCCGAGACACCGTCCTTCTCAAATCAGGCCC < 41bp 1 0.241718988710027 1 0.0947480797767639 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756137 chr15:40756131 synonymous SNV . 0 15 hm5C_associated_SNPs_21114 0 0 0 0 2 chromatin 1 0.500231643921096 1 0.999536712157807 hm5C_site_22167 DeepMRMD:1;iRNA_m5C:0.999536712157807 22168 chr19 36124656 36124656 1 + C T COAD 36124636 + 36124616 36124656 41 GGCCTAGGCCTGGGGTTGGGCCTGAAAGAGAAGGAAGAGGC GGCCTAGGCCTGGGGTTGGGCCTGAAAGAGAAGGAAGAGGT < 41bp 1 0.531131199892682 1 0.244213461875916 experiment 0.937737600214636 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124636 chr19:36124656 nonsynonymous SNV 0.996 0 41 hm5C_associated_SNPs_21115 0 0 1 0 1 Ribosome 1 0.500231643921088 1 0.999536712157825 hm5C_site_22168 DeepMRMD:1;iRNA_m5C:0.999536712157825 22169 chr17 79671702 79671702 1 + G T COAD 79671721 + 79671701 79671741 41 GGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC GTGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC < 41bp 1 0.106952421944727 1 0.0668188333511353 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671721 chr17:79671702 nonsynonymous SNV 0.024 4 2 hm5C_associated_SNPs_21116 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22169 DeepMRMD:1;iRNA_m5C:0.999536712157815 22170 chr12 6637448 6637448 1 + C T COAD 6637450 + 6637430 6637470 41 ACTGGGGATCTGGCCATCCGCTTTCCCAATCTGGTGGACCC ACTGGGGATCTGGCCATCTGCTTTCCCAATCTGGTGGACCC < 41bp 1 0.0923862424564445 1 0.066482812166214 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6637450 chr12:6637448 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_21117 0 0 1 0 0 Nucleus 1 0.500231180916484 1 0.999537638167033 hm5C_site_22170 DeepMRMD:1;iRNA_m5C:0.999537638167033 22171 chr10 35854955 35854955 1 + G A COAD 35854964 + 35854944 35854984 41 TTTGCAGGAACGAGCTAGAGCGACAGTTTCTTGAATTGCTG TTTGCAGGAACAAGCTAGAGCGACAGTTTCTTGAATTGCTG < 41bp 1 0.543504089854992 1 0.278145253658295 experiment 0.912991820290017 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNY ENSG00000108100 CDS Human protein_coding chr10:35854964 chr10:35854955 nonsynonymous SNV 0.992 3 12 hm5C_associated_SNPs_21118 0 0 1 0 1 Cytosol 1 0.500234745053158 1 0.999530509893685 hm5C_site_22171 DeepMRMD:1;iRNA_m5C:0.999530509893685 22172 chr16 30975430 30975430 1 + C T COAD 30975417 + 30975397 30975437 41 CCTGCTCTGTCGCTCTAGGCCGAATCCCGCCGCCGCTCTTC CCTGCTCTGTCGCTCTAGGCCGAATCCCGCCGCTGCTCTTC < 41bp 1 0.21120062649177 1 0.202542185783386 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30975417 chr16:30975430 nonsynonymous SNV 0.995 3 34 hm5C_associated_SNPs_21119 0 0 1 0 1 Cytosol 1 0.50023164390918 1 0.999536712181639 hm5C_site_22172 DeepMRMD:1;iRNA_m5C:0.999536712181639 22173 chr9 120476548 120476548 1 + C T COAD 120476528 + 120476508 120476548 41 CTCCATTTCAGCTCTGCCTTCACTACAGAGACTTTATTCCC CTCCATTTCAGCTCTGCCTTCACTACAGAGACTTTATTCCT < 41bp 1 0.383461695980963 1 0.154020428657532 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TLR4 ENSG00000136869 CDS Human protein_coding chr9:120476528 chr9:120476548 synonymous SNV . 0 41 hm5C_associated_SNPs_21120 0 0 0 0 0 cytosol 1 0.50023164392088 1 0.999536712158241 hm5C_site_22173 DeepMRMD:1;iRNA_m5C:0.999536712158241 22174 chr19 17392883 17392883 1 + T C COAD 17392879 + 17392859 17392899 41 TTTGCAGGGCAGTAGAGGAGCTGCTGCGCTGCGGCGCGGAC TTTGCAGGGCAGTAGAGGAGCTGCCGCGCTGCGGCGCGGAC < 41bp 1 0.45360564560903 1 0.252821385860443 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17392879 chr19:17392883 nonsynonymous SNV 0.716 4 25 hm5C_associated_SNPs_21121 0 0 1 0 2 chromatin 1 0.500231643920808 1 0.999536712158383 hm5C_site_22174 DeepMRMD:1;iRNA_m5C:0.999536712158383 22175 chr6 107100424 107100424 1 + A C COAD 107100423 + 107100403 107100443 41 ATTCATGCTTCCCAGTTTGGCAGATGTGAGCAAACTATGTA ATTCATGCTTCCCAGTTTGGCCGATGTGAGCAAACTATGTA < 41bp 1 0.259961810830874 1 0.143926978111267 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107100423 chr6:107100424 synonymous SNV . 0 22 hm5C_associated_SNPs_21122 0 0 1 0 2 Ribosome 1 0.500231806524834 1 0.999536386950333 hm5C_site_22175 DeepMRMD:1;iRNA_m5C:0.999536386950333 22176 chr4 1018713 1018713 1 + C T COAD 1018696 + 1018676 1018716 41 TCCTCTCGCTCTTGCAGACCCAAAACCGCCAGGGCCACCTG TCCTCTCGCTCTTGCAGACCCAAAACCGCCAGGGCCATCTG < 41bp 1 0.630983902761169 1 0.22291362285614 experiment 0.738032194477661 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1018696 chr4:1018713 nonsynonymous SNV 0.073 0 38 hm5C_associated_SNPs_21123 0 0 1 0 1 Ribosome 1 0.500231643920351 1 0.999536712159298 hm5C_site_22176 DeepMRMD:1;iRNA_m5C:0.999536712159298 22177 chr6 148865759 148865759 1 + C T COAD 148865756 + 148865736 148865776 41 CTCTCAGGGCAGGCGCCTGGCAGCCCACCAAGCACAAGGCC CTCTCAGGGCAGGCGCCTGGCAGTCCACCAAGCACAAGGCC < 41bp 1 0.22870518594122 1 0.645886600017548 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148865756 chr6:148865759 synonymous SNV . 0 24 hm5C_associated_SNPs_21124 0 0 0 0 0 Cytosol 1 0.500231643920701 0.708226799964904 0.999536712158598 hm5C_site_22177 DeepMRMD:0.708226799964904;iRNA_m5C:0.999536712158598 22178 chr6 148865759 148865759 1 + C T COAD 148865775 + 148865755 148865795 41 GCAGCCCACCAAGCACAAGGCCGCCCCCCTGGCTCTCAGAG GCAGTCCACCAAGCACAAGGCCGCCCCCCTGGCTCTCAGAG < 41bp 1 0.0990551357953451 1 0.0593737959861755 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148865775 chr6:148865759 synonymous SNV . 0 5 hm5C_associated_SNPs_21125 0 0 0 0 0 Cytosol 1 0.500231643922529 1 0.999536712154943 hm5C_site_22178 DeepMRMD:1;iRNA_m5C:0.999536712154943 22179 chr16 70509341 70509341 1 + C T COAD 70509347 + 70509327 70509367 41 CTGCTCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG CTGCTCCGCACCTTTGGGGGCGGCTTTGAGCTGCACACCTG < 41bp 1 0.413374376216956 1 0.414639115333557 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70509347 chr16:70509341 synonymous SNV . 0 15 hm5C_associated_SNPs_21126 0 0 1 0 2 chromatin 1 0.500231642601559 1 0.999536714796883 hm5C_site_22179 DeepMRMD:1;iRNA_m5C:0.999536714796883 22180 chr1 24979099 24979099 1 + G T COAD 24979097 + 24979077 24979117 41 CTTCTCACACTCGACCTAGACGGCGCCATAGATCCCGATCA CTTCTCACACTCGACCTAGACGTCGCCATAGATCCCGATCA < 41bp 1 0.393273953353938 1 0.340868562459946 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24979097 chr1:24979099 synonymous SNV . 0 23 hm5C_associated_SNPs_21127 0 0 1 0 1 Cytosol 1 0.500231638470753 1 0.999536723058494 hm5C_site_22180 DeepMRMD:1;iRNA_m5C:0.999536723058494 22181 chr6 7572263 7572263 1 + T C COAD 7572244 + 7572224 7572264 41 AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGATC AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGACC < 41bp 1 0.0340350088039412 1 0.0659577250480652 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572244 chr6:7572263 nonsynonymous SNV 0.418 0 40 hm5C_associated_SNPs_21128 0 0 1 0 1 Nucleus 1 0.500231643921035 1 0.99953671215793 hm5C_site_22181 DeepMRMD:1;iRNA_m5C:0.99953671215793 22182 chr19 41135394 41135394 1 + G A COAD 41135396 + 41135376 41135416 41 CCTTCCGCTGCATCTGCCGCCCGGGATTCGCACCCACGCAC CCTTCCGCTGCATCTGCCACCCGGGATTCGCACCCACGCAC < 41bp 1 0.635030753903843 1 0.896353840827942 experiment 0.729938492192314 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41135396 chr19:41135394 nonsynonymous SNV 0.035 1 19 hm5C_associated_SNPs_21129 0 0 1 0 1 Cytosol 1 0.500231643928528 0.207292318344116 0.999536712142944 hm5C_site_22182 DeepMRMD:0.207292318344116;iRNA_m5C:0.999536712142944 22183 chr1 46073985 46073985 1 + G A COAD 46073974 + 46073954 46073994 41 GATAGCTGCTAATGAAGAGACACAAGAGAGAGAAGAACAGA GATAGCTGCTAATGAAGAGACACAAGAGAGAAAAGAACAGA < 41bp 1 0.67193828163513 1 0.504048466682434 experiment 0.656123436729741 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46073974 chr1:46073985 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_21130 0 0 1 0 1 Nucleus 1 0.500231643921079 0.991903066635132 0.999536712157843 hm5C_site_22183 DeepMRMD:0.991903066635132;iRNA_m5C:0.999536712157843 22184 chr1 46073985 46073985 1 + G A COAD 46073991 + 46073971 46074011 41 AGACACAAGAGAGAGAAGAACAGATGAAAGAGGGTGAAGGT AGACACAAGAGAGAAAAGAACAGATGAAAGAGGGTGAAGGT < 41bp 1 0.523986950897477 1 0.638064444065094 experiment 0.952026098205045 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NASP ENSG00000132780 CDS Human protein_coding chr1:46073991 chr1:46073985 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_21131 0 0 1 0 1 Nucleus 1 0.500231643921761 0.723871111869812 0.999536712156478 hm5C_site_22184 DeepMRMD:0.723871111869812;iRNA_m5C:0.999536712156478 22185 chr11 65826382 65826382 1 + C T COAD 65826372 + 65826352 65826392 41 CGAGGGGTGTCCTCTGAGAGCTCTGGGGACCGGGAGAAAGA CGAGGGGTGTCCTCTGAGAGCTCTGGGGACTGGGAGAAAGA < 41bp 1 0.455442286028717 1 0.470812827348709 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826372 chr11:65826382 nonsynonymous SNV 0.991 2 31 hm5C_associated_SNPs_21132 0 0 1 0 1 Nucleus 1 0.500231643952478 1 0.999536712095043 hm5C_site_22185 DeepMRMD:1;iRNA_m5C:0.999536712095043 22186 chr14 21553988 21553988 1 + T C COAD 21553984 + 21553964 21554004 41 CAAACTCAAGTGGACAAGTTCTATTGCCCAGCTGCTGTGGA CAAACTCAAGTGGACAAGTTCTATCGCCCAGCTGCTGTGGA < 41bp 1 0.0913531177627636 1 0.0462859272956848 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21553984 chr14:21553988 synonymous SNV . 0 25 hm5C_associated_SNPs_21133 0 0 1 0 0 Cytosol 1 0.500231643761394 1 0.999536712477213 hm5C_site_22186 DeepMRMD:1;iRNA_m5C:0.999536712477213 22187 chr2 73114727 73114727 1 + G A COAD 73114733 + 73114713 73114753 41 AGGCCGAGCTGGGCGCCGAGCGGTCTGGCCTGCGCGTGGTG AGGCCGAGCTGGGCACCGAGCGGTCTGGCCTGCGCGTGGTG < 41bp 1 0.402264080888411 1 0.756728768348694 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPR ENSG00000116096 CDS Human protein_coding chr2:73114733 chr2:73114727 nonsynonymous SNV 0.210 1 15 hm5C_associated_SNPs_21134 0 0 1 0 0 Ribosome 1 0.500231754679391 0.486542463302612 0.999536490641218 hm5C_site_22187 DeepMRMD:0.486542463302612;iRNA_m5C:0.999536490641218 22188 chr8 145065693 145065693 1 + A G COAD 145065698 + 145065678 145065718 41 AAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTC AAGGGGGCTACCCCCGGGGGCCATATCCCCAGAGCCCCTTC < 41bp 1 0.213198020408098 1 0.0583626329898834 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065698 chr8:145065693 nonsynonymous SNV 0.893 0 16 hm5C_associated_SNPs_21135 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22188 DeepMRMD:1;iRNA_m5C:0.999536712157815 22189 chr8 145065693 145065693 1 + A G COAD 145065699 + 145065679 145065719 41 AGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCC AGGGGGCTACCCCCGGGGGCCATATCCCCAGAGCCCCTTCC < 41bp 1 0.170403536616743 1 0.154354065656662 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065699 chr8:145065693 nonsynonymous SNV 0.893 0 15 hm5C_associated_SNPs_21136 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22189 DeepMRMD:1;iRNA_m5C:0.999536712157815 22190 chr11 67079303 67079303 1 + G A COAD 67079295 + 67079275 67079315 41 CCCTGCATTTCCTCTACGCCCAGGTTCCGGAAGGTGGTGAG CCCTGCATTTCCTCTACGCCCAGGTTCCAGAAGGTGGTGAG < 41bp 1 0.618686329393712 1 0.506246447563171 experiment 0.762627341212576 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67079295 chr11:67079303 nonsynonymous SNV 0.934 0 29 hm5C_associated_SNPs_21137 0 0 1 0 0 nucleus 1 0.500231643921092 0.987507104873658 0.999536712157815 hm5C_site_22190 DeepMRMD:0.987507104873658;iRNA_m5C:0.999536712157815 22191 chr22 42280888 42280888 1 + C T COAD 42280873 + 42280853 42280893 41 TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGTGTTGT < 41bp 1 0.277419888639602 1 0.165903717279434 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42280873 chr22:42280888 nonsynonymous SNV 0.680 3 36 hm5C_associated_SNPs_21138 0 0 1 0 1 Ribosome 1 0.500231680962227 1 0.999536638075546 hm5C_site_22191 DeepMRMD:1;iRNA_m5C:0.999536638075546 22192 chr3 194408006 194408006 1 + A G COAD 194408016 + 194407996 194408036 41 GCGGCTGCCCAAGGTCTTCGCCTGGGTGTACCGGCACGAGC GCGGCTGCCCGAGGTCTTCGCCTGGGTGTACCGGCACGAGC < 41bp 1 0.515314613705638 1 0.376313537359238 experiment 0.969370772588725 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM43A ENSG00000185112 CDS Human protein_coding chr3:194408016 chr3:194408006 nonsynonymous SNV 0.996 3 11 hm5C_associated_SNPs_21139 0 0 1 0 0 exosome 1 0.500232217862454 1 0.999535564275091 hm5C_site_22192 DeepMRMD:1;iRNA_m5C:0.999535564275091 22193 chr12 71977624 71977624 1 + G A COAD 71977616 + 71977596 71977636 41 GAACATGCTCACGGGAGTCTCCAGTGCCGTGCTGGCTGGTG GAACATGCTCACGGGAGTCTCCAGTGCCATGCTGGCTGGTG < 41bp 1 0.421914924993203 1 0.683469414710999 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LGR5 ENSG00000139292 CDS Human protein_coding chr12:71977616 chr12:71977624 nonsynonymous SNV 0.004 1 29 hm5C_associated_SNPs_21141 0 0 1 0 1 Nucleus 1 0.500231632856517 0.633061170578002 0.999536734286965 hm5C_site_22193 DeepMRMD:0.633061170578002;iRNA_m5C:0.999536734286965 22194 chr2 211525367 211525367 1 + T C COAD 211525357 + 211525337 211525377 41 ATTGGACCATCCCATAATTCCTGCTGACTATGTTGCAATTA ATTGGACCATCCCATAATTCCTGCTGACTACGTTGCAATTA < 41bp 1 0.349943431592483 1 0.0398069024085999 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211525357 chr2:211525367 synonymous SNV . 0 31 hm5C_associated_SNPs_21142 0 0 1 0 1 Nucleus 1 0.500033387369439 1 0.999933225261121 hm5C_site_22194 DeepMRMD:1;iRNA_m5C:0.999933225261121 22195 chr19 50902126 50902126 1 + G A COAD 50902140 + 50902120 50902160 41 GCGGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGG GCGGCGACCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGG < 41bp 1 0.548211864068166 1 0.730579316616058 experiment 0.903576271863667 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902140 chr19:50902126 synonymous SNV . 0 7 hm5C_associated_SNPs_21143 0 0 1 0 1 Nucleus 1 0.500231643921092 0.538841366767884 0.999536712157815 hm5C_site_22195 DeepMRMD:0.538841366767884;iRNA_m5C:0.999536712157815 22196 chrX 48372958 48372958 1 + A G COAD 48372950 + 48372930 48372970 41 AGCCACTGAATGTGGAGCTGCCTCGGTCAATGGTGGAAGTT AGCCACTGAATGTGGAGCTGCCTCGGTCGATGGTGGAAGTT < 41bp 1 0.0907908855189887 1 0.102125555276871 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48372950 chrX:48372958 synonymous SNV . 0 29 hm5C_associated_SNPs_21145 0 0 0 0 2 nucleolus 1 0.500231643933017 1 0.999536712133965 hm5C_site_22196 DeepMRMD:1;iRNA_m5C:0.999536712133965 22197 chr1 26883496 26883496 1 + A G COAD 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATGCCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC < 41bp 1 0.287250581672401 1 0.697667419910431 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883496 nonsynonymous SNV 0.935 2 8 hm5C_associated_SNPs_21146 0 0 1 0 1 Ribosome 1 0.500231644052605 0.604665160179138 0.99953671189479 hm5C_site_22197 DeepMRMD:0.604665160179138;iRNA_m5C:0.99953671189479 22198 chr2 32666440 32666440 1 + G A COAD 32666438 + 32666418 32666458 41 AATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCCG AATGAAAATACAAGTGGCACCCATAAATCTGAAAACCTCCG < 41bp 1 0.0260662581430005 1 0.2214075922966 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32666438 chr2:32666440 nonsynonymous SNV 0.973 1 23 hm5C_associated_SNPs_21147 0 0 1 0 2 Nucleus 1 0.500231662270853 1 0.999536675458293 hm5C_site_22198 DeepMRMD:1;iRNA_m5C:0.999536675458293 22199 chr1 65147714 65147714 1 + G A COAD 65147716 + 65147696 65147736 41 ACTCGGTTTATAGCTGCGGTCATCGAACGACATGCACACAG ACTCGGTTTATAGCTGCGATCATCGAACGACATGCACACAG < 41bp 1 0.468498976557224 1 0.492029517889023 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147716 chr1:65147714 nonsynonymous SNV 0.976 1 19 hm5C_associated_SNPs_21148 0 0 0 0 2 unknown 1 0.500231646388744 1 0.999536707222512 hm5C_site_22199 DeepMRMD:1;iRNA_m5C:0.999536707222512 22200 chr12 124239081 124239081 1 + G A COAD 124239064 + 124239044 124239084 41 CTCCTACCTGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC CTCCTACCTGAGGCTCTGGGCGCTTAGCCTGGCTCACACAC < 41bp 1 0.271394087098168 1 0.099140077829361 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239064 chr12:124239081 nonsynonymous SNV 0.961 5 38 hm5C_associated_SNPs_21149 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643856923 1 0.999536712286154 hm5C_site_22200 DeepMRMD:1;iRNA_m5C:0.999536712286154 22201 chr19 1037814 1037814 1 + G T COAD 1037820 + 1037800 1037840 41 CACAGTGGCCGATGGGGCTCCCTCGGGCACCGGCGACTGCC CACAGTGGCCGATGTGGCTCCCTCGGGCACCGGCGACTGCC < 41bp 1 0.20183570351382 1 0.119029760360718 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037820 chr19:1037814 nonsynonymous SNV 0.008 1 15 hm5C_associated_SNPs_21150 0 0 1 0 0 Ribosome 1 0.50023525531124 1 0.999529489377521 hm5C_site_22201 DeepMRMD:1;iRNA_m5C:0.999529489377521 22202 chr7 73770923 73770923 1 + C T COAD 73770922 + 73770902 73770942 41 CGTCAGCTCTGTGGCCTCCTCCGTGGGGGGTCGGCCCAGCC CGTCAGCTCTGTGGCCTCCTCTGTGGGGGGTCGGCCCAGCC < 41bp 1 0.526944318832851 1 0.694785714149475 experiment 0.946111362334298 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73770922 chr7:73770923 synonymous SNV . 0 22 hm5C_associated_SNPs_21151 0 0 0 0 1 Ribosome 1 0.500231643921093 0.61042857170105 0.999536712157815 hm5C_site_22202 DeepMRMD:0.61042857170105;iRNA_m5C:0.999536712157815 22203 chrX 21874794 21874794 1 + G A COAD 21874808 + 21874788 21874828 41 GCAGCCGCTCTTCACGAACACGGGCTATGGCGACCACGACC GCAGCCACTCTTCACGAACACGGGCTATGGCGACCACGACC < 41bp 1 0.688386135529312 1 0.713387787342072 experiment 0.623227728941375 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YY2 ENSG00000230797 CDS Human protein_coding chrX:21874808 chrX:21874794 synonymous SNV . 0 7 hm5C_associated_SNPs_21152 0 0 0 0 0 exosome 1 0.500231643238577 0.573224425315856 0.999536713522846 hm5C_site_22203 DeepMRMD:0.573224425315856;iRNA_m5C:0.999536713522846 22204 chr8 145698751 145698751 1 + C T COAD 145698760 + 145698740 145698780 41 GCTCTCGCGCCCGCAGAGGGCCTGCCCCTCTAGTCCTGGGT GCTCTCGCGCCTGCAGAGGGCCTGCCCCTCTAGTCCTGGGT < 41bp 1 0.0677796047474054 1 0.0756775736808777 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145698760 chr8:145698751 nonsynonymous SNV 0.000 0 12 hm5C_associated_SNPs_21153 0 0 0 0 0 nucleolus 1 0.500231643918026 1 0.999536712163947 hm5C_site_22204 DeepMRMD:1;iRNA_m5C:0.999536712163947 22205 chr22 42262915 42262915 1 + A G COAD 42262909 + 42262889 42262929 41 AACAGCTGTGTAGCTCCTTTCCTGGCAGTGGTGGTAGTGGT AACAGCTGTGTAGCTCCTTTCCTGGCGGTGGTGGTAGTGGT < 41bp 1 0.150229895369388 1 0.213263690471649 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42262909 chr22:42262915 nonsynonymous SNV 0.212 0 27 hm5C_associated_SNPs_21154 0 0 1 0 1 Ribosome 1 0.500236065531295 1 0.99952786893741 hm5C_site_22205 DeepMRMD:1;iRNA_m5C:0.99952786893741 22206 chrX 48417378 48417378 1 + C T COAD 48417383 + 48417363 48417403 41 CATCACTGACGACTGCCGCCCTGCCCTTTACACAGTCCATC CATCACTGACGACTGTCGCCCTGCCCTTTACACAGTCCATC < 41bp 1 0.191792462107121 1 0.0442826747894287 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48417383 chrX:48417378 nonsynonymous SNV 0.984 0 16 hm5C_associated_SNPs_21155 0 0 1 0 2 nucleolus 1 0.500231643958845 1 0.99953671208231 hm5C_site_22206 DeepMRMD:1;iRNA_m5C:0.99953671208231 22207 chr6 32134865 32134865 1 + C T COAD 32134883 + 32134863 32134903 41 GACGTGGATGAATGTAGGACCAGCATCACCCTCTGCTCGCA GATGTGGATGAATGTAGGACCAGCATCACCCTCTGCTCGCA < 41bp 1 0.504397495138335 1 0.429908394813538 experiment 0.99120500972333 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134883 chr6:32134865 synonymous SNV . 0 3 hm5C_associated_SNPs_21156 0 0 0 0 1 chromatin 1 0.500231644445844 1 0.999536711108311 hm5C_site_22207 DeepMRMD:1;iRNA_m5C:0.999536711108311 22208 chr1 110559004 110559004 1 + C T COAD 110558996 + 110558976 110559016 41 CTCTCCAAAGCTGGGAAGCTCTGTGTTCCGGCCATGAACGT CTCTCCAAAGCTGGGAAGCTCTGTGTTCTGGCCATGAACGT < 41bp 1 0.466733550460475 1 0.0671622455120087 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110558996 chr1:110559004 nonsynonymous SNV 0.982 5 29 hm5C_associated_SNPs_21157 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_22208 DeepMRMD:1;iRNA_m5C:0.999536712157815 22209 chr11 120099669 120099669 1 + T G COAD 120099680 + 120099660 120099700 41 GGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG GGGAAGCCCGGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG < 41bp 1 0.561534364716553 1 0.549838781356812 experiment 0.876931270566895 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099680 chr11:120099669 nonsynonymous SNV 0.104 4 10 hm5C_associated_SNPs_21159 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.900322437286376 0.999536712157815 hm5C_site_22209 DeepMRMD:0.900322437286376;iRNA_m5C:0.999536712157815 22210 chr22 40662805 40662805 1 + C T COAD 40662825 + 40662805 40662845 41 CTGGAGCAGCGGGCCACAGCCTGCAACACCTAAGGATGAGG TTGGAGCAGCGGGCCACAGCCTGCAACACCTAAGGATGAGG < 41bp 1 0.423584498398244 1 0.853766560554504 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40662825 chr22:40662805 synonymous SNV . 0 1 hm5C_associated_SNPs_21160 0 0 0 0 0 Cytosol 1 0.500231827670556 0.292466878890992 0.999536344658888 hm5C_site_22210 DeepMRMD:0.292466878890992;iRNA_m5C:0.999536344658888 22211 chr2 202141582 202141582 1 + A G COAD 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAGCCTCGGGGATACTGTCTGATCATCAACAATCA < 41bp 1 0.316301072263737 1 0.273353666067123 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141582 nonsynonymous SNV 0.878 0 9 hm5C_associated_SNPs_21161 0 0 1 0 1 Nucleus 1 0.500233103571882 1 0.999533792856236 hm5C_site_22211 DeepMRMD:1;iRNA_m5C:0.999533792856236 22212 chr21 38117418 38117418 1 + C A COAD 38117415 + 38117395 38117435 41 CCGGCGAACACTGCTAGGCACAGCCTGGTGCCAAGCTACGA CCGGCGAACACTGCTAGGCACAGACTGGTGCCAAGCTACGA < 41bp 1 0.223972603431494 1 0.204629719257355 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIM2 ENSG00000159263 CDS Human protein_coding chr21:38117415 chr21:38117418 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_21162 0 0 0 0 1 nucleus 1 0.500231966135884 1 0.999536067728233 hm5C_site_22212 DeepMRMD:1;iRNA_m5C:0.999536067728233 22213 chr14 24617679 24617679 1 + T C COAD 24617684 + 24617664 24617704 41 CTGGGGAGCCCAGCCTAACTCAAGTAAGTTTGAGGACCCCC CTGGGGAGCCCAGCCCAACTCAAGTAAGTTTGAGGACCCCC < 41bp 1 0.383498841046875 1 0.379353165626526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617684 chr14:24617679 nonsynonymous SNV 0.033 1 16 hm5C_associated_SNPs_21163 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22213 DeepMRMD:1;iRNA_m5C:0.999536712157815 22214 chr5 139909168 139909168 1 + T A COAD 139909148 + 139909128 139909168 41 TTTGCCACCTACATTTGGCCCAGCCACACTTTTCAATCACT TTTGCCACCTACATTTGGCCCAGCCACACTTTTCAATCACA < 41bp 1 0.0733960407171764 1 0.0768877863883972 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139909148 chr5:139909168 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_21164 0 0 1 0 0 unknown 1 0.500231652105466 1 0.999536695789069 hm5C_site_22214 DeepMRMD:1;iRNA_m5C:0.999536695789069 22215 chr22 42042975 42042975 1 + T C COAD 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCTCTCAAGCCCCCTCCAATAAAGCTCTATCGG < 41bp 1 0.0745788963910086 1 0.243395268917084 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042975 synonymous SNV . 0 20 hm5C_associated_SNPs_21165 0 0 1 0 1 Cytosol 1 0.500231643920537 1 0.999536712158926 hm5C_site_22215 DeepMRMD:1;iRNA_m5C:0.999536712158926 22216 chrX 10180628 10180628 1 + G A COAD 10180611 + 10180591 10180631 41 TACCATCACCATGACTGGATCATCTTCAGGAACTGGTGCAG TACCATCACCATGACTGGATCATCTTCAGGAACTGGTACAG < 41bp 1 0.177928985859423 1 0.0790988504886627 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10180611 chrX:10180628 nonsynonymous SNV 0.998 5 38 hm5C_associated_SNPs_21166 0 0 0 0 1 Endoplasmic reticulum 1 0.5002315082745 1 0.999536983451 hm5C_site_22216 DeepMRMD:1;iRNA_m5C:0.999536983451 22217 chr17 17697990 17697990 1 + C T COAD 17698000 + 17697980 17698020 41 AGAGCCTACACGGCAGTCTGCCGCTCGACAGCTTCTCCAAG AGAGCCTACATGGCAGTCTGCCGCTCGACAGCTTCTCCAAG < 41bp 1 0.0620785652155458 1 0.0133803188800812 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17698000 chr17:17697990 synonymous SNV . 0 11 hm5C_associated_SNPs_21167 0 0 1 0 0 chromatin 1 0.500231643880145 1 0.999536712239711 hm5C_site_22217 DeepMRMD:1;iRNA_m5C:0.999536712239711 22218 chr17 41345510 41345510 1 + G A COAD 41345492 + 41345472 41345512 41 TGCCCCAGCCTTGGAGGGAACGTATACTTCCCATTGGCGTC TGCCCCAGCCTTGGAGGGAACGTATACTTCCCATTGGCATC < 41bp 1 0.217860618370541 1 0.0788317620754242 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41345492 chr17:41345510 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_21168 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22218 DeepMRMD:1;iRNA_m5C:0.999536712157815 22219 chr11 118405277 118405277 1 + T C COAD 118405286 + 118405266 118405306 41 AGCGTGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGA AGCGTGAGCAGCGATGAGATCTGGCTCTGAGCCGAGGGCGA < 41bp 1 0.607481359605798 1 0.458403885364532 experiment 0.785037280788404 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118405286 chr11:118405277 synonymous SNV . 0 12 hm5C_associated_SNPs_21169 0 0 1 0 1 Nucleus 1 0.500234891936094 1 0.999530216127811 hm5C_site_22219 DeepMRMD:1;iRNA_m5C:0.999530216127811 22220 chr11 118405277 118405277 1 + T C COAD 118405290 + 118405270 118405310 41 TGAGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGAGACA TGAGCAGCGATGAGATCTGGCTCTGAGCCGAGGGCGAGACA < 41bp 1 0.301954586295442 1 0.060281366109848 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118405290 chr11:118405277 synonymous SNV . 0 8 hm5C_associated_SNPs_21170 0 0 1 0 1 Nucleus 1 0.500231759213185 1 0.999536481573629 hm5C_site_22220 DeepMRMD:1;iRNA_m5C:0.999536481573629 22221 chr11 118405277 118405277 1 + T C COAD 118405292 + 118405272 118405312 41 AGCAGTGATGAGATCTGGCTCTGAGCCGAGGGCGAGACAGG AGCAGCGATGAGATCTGGCTCTGAGCCGAGGGCGAGACAGG < 41bp 1 0.616057937881851 1 0.170052498579025 experiment 0.767884124236298 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118405292 chr11:118405277 synonymous SNV . 0 6 hm5C_associated_SNPs_21171 0 0 1 0 1 Nucleus 1 0.500231476346846 1 0.999537047306309 hm5C_site_22221 DeepMRMD:1;iRNA_m5C:0.999537047306309 22222 chr16 70509348 70509348 1 + G A COAD 70509347 + 70509327 70509367 41 CTGCTCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG CTGCTCCGCACCTTCGGGGGCAGCTTTGAGCTGCACACCTG < 41bp 1 0.362170201058777 1 0.303028285503387 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70509347 chr16:70509348 nonsynonymous SNV 0.776 4 22 hm5C_associated_SNPs_21172 0 0 1 0 2 chromatin 1 0.500231643923043 1 0.999536712153913 hm5C_site_22222 DeepMRMD:1;iRNA_m5C:0.999536712153913 22223 chr11 75280007 75280007 1 + G A COAD 75279988 + 75279968 75280008 41 TCCGCTCCTCTCCCAGGCCTCTACAACTACTACGACGACGA TCCGCTCCTCTCCCAGGCCTCTACAACTACTACGACGACAA < 41bp 1 0.568083100635948 1 0.832947850227356 experiment 0.863833798728104 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279988 chr11:75280007 nonsynonymous SNV 0.947 1 40 hm5C_associated_SNPs_21173 0 0 1 0 1 Ribosome 1 0.500231643921093 0.334104299545288 0.999536712157815 hm5C_site_22223 DeepMRMD:0.334104299545288;iRNA_m5C:0.999536712157815 22224 chr17 6012943 6012943 1 + T A COAD 6012962 + 6012942 6012982 41 ATTCTCAGGGGCTGGGAATGCTACTGTGCTTACCCTACCCC AATCTCAGGGGCTGGGAATGCTACTGTGCTTACCCTACCCC < 41bp 1 0.599850823257624 1 0.435378402471542 experiment 0.800298353484752 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6012962 chr17:6012943 nonsynonymous SNV 0.992 1 2 hm5C_associated_SNPs_21175 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22224 DeepMRMD:1;iRNA_m5C:0.999536712157815 22225 chr13 93879789 93879789 1 + C T COAD 93879771 + 93879751 93879791 41 GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTC GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGTTC < 41bp 1 0.57437866373525 1 0.802209675312042 experiment 0.851242672529499 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879771 chr13:93879789 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_21176 0 0 1 0 1 Ribosome 1 0.500231643921952 0.395580649375916 0.999536712156095 hm5C_site_22225 DeepMRMD:0.395580649375916;iRNA_m5C:0.999536712156095 22226 chrX 152915708 152915708 1 + C A COAD 152915709 + 152915689 152915729 41 GCGGCCTCCAACCCGCCCTCCTTCTTCACCACCCCCACCAG GCGGCCTCCAACCCGCCCTACTTCTTCACCACCCCCACCAG < 41bp 1 0.181494815557143 1 0.142328351736069 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152915709 chrX:152915708 nonsynonymous SNV 0.924 2 20 hm5C_associated_SNPs_21177 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22226 DeepMRMD:1;iRNA_m5C:0.999536712157815 22227 chr7 134552485 134552485 1 + A G COAD 134552471 + 134552451 134552491 41 CATCATCTGGTCTCCCTGAACCTGAAATCACACCATGGATG CATCATCTGGTCTCCCTGAACCTGAAATCACACCGTGGATG < 41bp 1 0.458356802599252 1 0.242856711149216 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CALD1 ENSG00000122786 CDS Human protein_coding chr7:134552471 chr7:134552485 nonsynonymous SNV 0.978 2 35 hm5C_associated_SNPs_21178 0 0 1 0 2 Ribosome 1 0.500231642178037 1 0.999536715643925 hm5C_site_22227 DeepMRMD:1;iRNA_m5C:0.999536715643925 22228 chr1 161751757 161751757 1 + A G COAD 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GGCATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA < 41bp 1 0.181838701282624 1 0.138510763645172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751757 nonsynonymous SNV 0.984 0 2 hm5C_associated_SNPs_21180 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643922165 1 0.999536712155671 hm5C_site_22228 DeepMRMD:1;iRNA_m5C:0.999536712155671 22229 chr7 128483327 128483327 1 + C T COAD 128483319 + 128483299 128483339 41 CCTTCCACATCAAGGTGGACCCATCCCACGATGCCAGCAAA CCTTCCACATCAAGGTGGACCCATCCCATGATGCCAGCAAA < 41bp 1 0.0108606200990859 1 0.160033196210861 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128483319 chr7:128483327 synonymous SNV . 0 29 hm5C_associated_SNPs_21181 0 0 0 0 2 chromatin 1 0.500231643924847 1 0.999536712150305 hm5C_site_22229 DeepMRMD:1;iRNA_m5C:0.999536712150305 22230 chr1 32627990 32627990 1 + G A COAD 32628006 + 32627986 32628026 41 TCTCGCCTACTCTTCAGCAGCGACTCGGACTTGCTGGCAGA TCTCACCTACTCTTCAGCAGCGACTCGGACTTGCTGGCAGA < 41bp 1 0.287347359167707 1 0.0953533947467804 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32628006 chr1:32627990 nonsynonymous SNV 0.997 1 5 hm5C_associated_SNPs_21182 0 0 1 0 1 Cytosol 1 0.500232235098906 1 0.999535529802188 hm5C_site_22230 DeepMRMD:1;iRNA_m5C:0.999535529802188 22231 chr9 35736406 35736406 1 + C T COAD 35736415 + 35736395 35736435 41 CCCGCCAGCTTCGTGCCCTCCCCAGTGAGGACCCTTACCAG CCCGCCAGCTTTGTGCCCTCCCCAGTGAGGACCCTTACCAG < 41bp 1 0.498806513908165 1 0.252928286790848 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35736415 chr9:35736406 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_21184 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22231 DeepMRMD:1;iRNA_m5C:0.999536712157815 22232 chr3 49053238 49053238 1 + C T COAD 49053243 - 49053223 49053263 41 TACTACAACCGGGTACACATCCTGGGGGTGAGCACACAGCA TACTACAACCGGGTACACATCCTGGAGGTGAGCACACAGCA < 41bp 1 0.233366747093644 1 0.55369645357132 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053243 chr3:49053238 nonsynonymous SNV 0.967 3 26 hm5C_associated_SNPs_21185 0 0 0 0 2 chromatin 1 0.500231613430783 0.89260709285736 0.999536773138434 hm5C_site_22232 DeepMRMD:0.89260709285736;iRNA_m5C:0.999536773138434 22233 chr3 49053238 49053238 1 + C T COAD 49053246 - 49053226 49053266 41 TCCTACTACAACCGGGTACACATCCTGGGGGTGAGCACACA TCCTACTACAACCGGGTACACATCCTGGAGGTGAGCACACA < 41bp 1 0.108421335229762 1 0.155161172151566 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053246 chr3:49053238 nonsynonymous SNV 0.967 3 29 hm5C_associated_SNPs_21186 0 0 0 0 2 chromatin 1 0.500231730997481 1 0.999536538005037 hm5C_site_22233 DeepMRMD:1;iRNA_m5C:0.999536538005037 22234 chr3 49053238 49053238 1 + C T COAD 49053248 - 49053228 49053268 41 GCTCCTACTACAACCGGGTACACATCCTGGGGGTGAGCACA GCTCCTACTACAACCGGGTACACATCCTGGAGGTGAGCACA < 41bp 1 0.12375450724544 1 0.178695529699326 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053248 chr3:49053238 nonsynonymous SNV 0.967 3 31 hm5C_associated_SNPs_21187 0 0 0 0 2 chromatin 1 0.500231644018993 1 0.999536711962013 hm5C_site_22234 DeepMRMD:1;iRNA_m5C:0.999536711962013 22235 chr1 162492294 162492294 1 + C T COAD 162492304 + 162492284 162492324 41 ACATTCTACCCGCTGAGTGCCTACAAGAGGGGATATCTGTA ACATTCTACCTGCTGAGTGCCTACAAGAGGGGATATCTGTA < 41bp 1 0.523669099738704 1 0.791084825992584 experiment 0.952661800522592 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162492304 chr1:162492294 nonsynonymous SNV 0.999 4 11 hm5C_associated_SNPs_21188 1 0 1 0 0 chromatin 1 0.500231643921154 0.417830348014832 0.999536712157693 hm5C_site_22235 DeepMRMD:0.417830348014832;iRNA_m5C:0.999536712157693 Cerebral visual impairment and intellectual disability Cerebral visual impairment and intellectual disability 22236 chr10 115661632 115661632 1 + C T COAD 115661651 + 115661631 115661671 41 TCGTAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCACT TTGTAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCACT < 41bp 1 0.232867277617681 1 0.322580635547638 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661651 chr10:115661632 synonymous SNV . 0 2 hm5C_associated_SNPs_21191 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22236 DeepMRMD:1;iRNA_m5C:0.999536712157815 22237 chr2 189873899 189873899 1 + G A COAD 189873898 + 189873878 189873918 41 GATGGTTCTCGTAAAAACCCCGCTAGAAACTGCAGAGACCT GATGGTTCTCGTAAAAACCCCACTAGAAACTGCAGAGACCT < 41bp 1 0.273667977787477 1 0.174733579158783 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189873898 chr2:189873899 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_21192 2 0 0 0 1 Endoplasmic reticulum 1 0.500244861555974 1 0.999510276888052 hm5C_site_22237 DeepMRMD:1;iRNA_m5C:0.999510276888052 Thoracic aortic aneurysm and aortic dissection Thoracic aortic aneurysm and aortic dissection 22238 chr6 157099162 157099162 1 + G A COAD 157099170 + 157099150 157099190 41 AAGCGCCGCCGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGG AAGCGCCGCCGCACTGTCCTCCTCCTCCTCCTCCTCCGCGG < 41bp 1 0.0933465773227588 1 0.0766684412956238 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARID1B ENSG00000049618 CDS Human protein_coding chr6:157099170 chr6:157099162 synonymous SNV . 0 13 hm5C_associated_SNPs_21194 0 0 0 0 0 Ribosome 1 0.500231644064445 1 0.99953671187111 hm5C_site_22238 DeepMRMD:1;iRNA_m5C:0.99953671187111 22239 chr6 157099162 157099162 1 + G A COAD 157099171 + 157099151 157099191 41 AGCGCCGCCGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGC AGCGCCGCCGCACTGTCCTCCTCCTCCTCCTCCTCCGCGGC < 41bp 1 0.181311447528806 1 0.408116638660431 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARID1B ENSG00000049618 CDS Human protein_coding chr6:157099171 chr6:157099162 synonymous SNV . 0 12 hm5C_associated_SNPs_21195 0 0 0 0 0 Ribosome 1 0.500231645586999 1 0.999536708826002 hm5C_site_22239 DeepMRMD:1;iRNA_m5C:0.999536708826002 22240 chr6 157099162 157099162 1 + G A COAD 157099173 + 157099153 157099193 41 CGCCGCCGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGG CGCCGCCGCACTGTCCTCCTCCTCCTCCTCCTCCGCGGCGG < 41bp 1 0.073586108640057 1 0.0761036276817322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARID1B ENSG00000049618 CDS Human protein_coding chr6:157099173 chr6:157099162 synonymous SNV . 0 10 hm5C_associated_SNPs_21196 0 0 0 0 0 Ribosome 1 0.500231641451084 1 0.999536717097831 hm5C_site_22240 DeepMRMD:1;iRNA_m5C:0.999536717097831 22241 chr6 157099162 157099162 1 + G A COAD 157099174 + 157099154 157099194 41 GCCGCCGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGC GCCGCCGCACTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGC < 41bp 1 0.148416150641852 1 0.149357795715332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARID1B ENSG00000049618 CDS Human protein_coding chr6:157099174 chr6:157099162 synonymous SNV . 0 9 hm5C_associated_SNPs_21197 0 0 0 0 0 Ribosome 1 0.500231643915226 1 0.999536712169548 hm5C_site_22241 DeepMRMD:1;iRNA_m5C:0.999536712169548 22242 chr6 157099162 157099162 1 + G A COAD 157099176 + 157099156 157099196 41 CGCCGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAG CGCCGCACTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAG < 41bp 1 0.0804189852058286 1 0.108329266309738 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARID1B ENSG00000049618 CDS Human protein_coding chr6:157099176 chr6:157099162 synonymous SNV . 0 7 hm5C_associated_SNPs_21198 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_22242 DeepMRMD:1;iRNA_m5C:0.999536712157816 22243 chr6 157099162 157099162 1 + G A COAD 157099177 + 157099157 157099197 41 GCCGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGC GCCGCACTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGC < 41bp 1 0.255201602217482 1 0.128659456968307 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARID1B ENSG00000049618 CDS Human protein_coding chr6:157099177 chr6:157099162 synonymous SNV . 0 6 hm5C_associated_SNPs_21199 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_22243 DeepMRMD:1;iRNA_m5C:0.999536712157815 22244 chr6 157099162 157099162 1 + G A COAD 157099179 + 157099159 157099199 41 CGCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGG CGCACTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGG < 41bp 1 0.0514968555651681 1 0.119414716959 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARID1B ENSG00000049618 CDS Human protein_coding chr6:157099179 chr6:157099162 synonymous SNV . 0 4 hm5C_associated_SNPs_21200 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22244 DeepMRMD:1;iRNA_m5C:0.999536712157815 22245 chr6 157099162 157099162 1 + G A COAD 157099180 + 157099160 157099200 41 GCGCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGC GCACTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGC < 41bp 1 0.214586605594538 1 0.315412372350693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARID1B ENSG00000049618 CDS Human protein_coding chr6:157099180 chr6:157099162 synonymous SNV . 0 3 hm5C_associated_SNPs_21201 0 0 0 0 0 Ribosome 1 0.500231643896197 1 0.999536712207605 hm5C_site_22245 DeepMRMD:1;iRNA_m5C:0.999536712207605 22246 chr6 157099162 157099162 1 + G A COAD 157099182 + 157099162 157099202 41 GCTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGG ACTGTCCTCCTCCTCCTCCTCCTCCGCGGCGGCAGCGGCGG < 41bp 1 0.0752328438255583 1 0.491848766803741 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARID1B ENSG00000049618 CDS Human protein_coding chr6:157099182 chr6:157099162 synonymous SNV . 0 1 hm5C_associated_SNPs_21202 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22246 DeepMRMD:1;iRNA_m5C:0.999536712157815 22247 chr6 148865777 148865777 1 + G A COAD 148865775 + 148865755 148865795 41 GCAGCCCACCAAGCACAAGGCCGCCCCCCTGGCTCTCAGAG GCAGCCCACCAAGCACAAGGCCACCCCCCTGGCTCTCAGAG < 41bp 1 0.0572056210556947 1 0.0437221229076385 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148865775 chr6:148865777 synonymous SNV . 0 23 hm5C_associated_SNPs_21203 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_22247 DeepMRMD:1;iRNA_m5C:0.999536712157814 22248 chr7 90355881 90355881 1 + A T COAD 90355889 + 90355869 90355909 41 TTCTTTTCTCAGATATGTGTCACAAAGATGTCTACACGGAA TTCTTTTCTCAGTTATGTGTCACAAAGATGTCTACACGGAA < 41bp 1 0.340956695259015 1 0.188469409942627 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355889 chr7:90355881 nonsynonymous SNV 0.977 1 13 hm5C_associated_SNPs_21204 0 0 0 0 1 Nucleus 1 0.500231643107688 1 0.999536713784624 hm5C_site_22248 DeepMRMD:1;iRNA_m5C:0.999536713784624 22249 chr7 90355881 90355881 1 + A T COAD 90355891 + 90355871 90355911 41 CTTTTCTCAGATATGTGTCACAAAGATGTCTACACGGAACT CTTTTCTCAGTTATGTGTCACAAAGATGTCTACACGGAACT < 41bp 1 0.165211648020585 1 0.130004405975342 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355891 chr7:90355881 nonsynonymous SNV 0.977 1 11 hm5C_associated_SNPs_21205 0 0 0 0 1 Nucleus 1 0.500231643596396 1 0.999536712807208 hm5C_site_22249 DeepMRMD:1;iRNA_m5C:0.999536712807208 22250 chr7 90355881 90355881 1 + A T COAD 90355900 + 90355880 90355920 41 GATATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAA GTTATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAA < 41bp 1 0.584619864018329 1 0.0938813388347626 experiment 0.830760271963343 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355900 chr7:90355881 nonsynonymous SNV 0.977 1 2 hm5C_associated_SNPs_21206 0 0 0 0 1 Nucleus 1 0.500231643817336 1 0.999536712365328 hm5C_site_22250 DeepMRMD:1;iRNA_m5C:0.999536712365328 22251 chr7 142459866 142459866 1 + G A COAD 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTCTGGCTGGGGCAACACTACGAGCTCTGGCGGTGA < 41bp 1 0.467455917828761 1 0.249523133039474 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459866 nonsynonymous SNV 0.029 1 25 hm5C_associated_SNPs_21208 0 0 0 0 1 Cytosol 1 0.500231643937289 1 0.999536712125421 hm5C_site_22251 DeepMRMD:1;iRNA_m5C:0.999536712125421 22252 chr7 142459866 142459866 1 + G A COAD 142459864 + 142459844 142459884 41 CATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT CATCTCTGGCTGGGGCAACACTACGAGCTCTGGCGGTGAGT < 41bp 1 0.597771966651575 1 0.428041756153107 experiment 0.80445606669685 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459864 chr7:142459866 nonsynonymous SNV 0.029 1 23 hm5C_associated_SNPs_21209 0 0 0 0 1 Cytosol 1 0.500231644074301 1 0.999536711851398 hm5C_site_22252 DeepMRMD:1;iRNA_m5C:0.999536711851398 22253 chr7 142459866 142459866 1 + G A COAD 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTCTGGCTGGGGCAACACTACGAGCTCTGGCGGTGAGTGGG < 41bp 1 0.428650163798374 1 0.364958584308624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459866 nonsynonymous SNV 0.029 1 20 hm5C_associated_SNPs_21210 0 0 0 0 1 Cytosol 1 0.500231644167317 1 0.999536711665365 hm5C_site_22253 DeepMRMD:1;iRNA_m5C:0.999536711665365 22254 chr7 142459866 142459866 1 + G A COAD 142459871 + 142459851 142459891 41 GGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC GGCTGGGGCAACACTACGAGCTCTGGCGGTGAGTGGGACCC < 41bp 1 0.386594637704386 1 0.272782534360886 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459871 chr7:142459866 nonsynonymous SNV 0.029 1 16 hm5C_associated_SNPs_21211 0 0 0 0 1 Cytosol 1 0.5002317102024 1 0.9995365795952 hm5C_site_22254 DeepMRMD:1;iRNA_m5C:0.9995365795952 22255 chr7 142459866 142459866 1 + G A COAD 142459873 + 142459853 142459893 41 CTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTT CTGGGGCAACACTACGAGCTCTGGCGGTGAGTGGGACCCTT < 41bp 1 0.585550759456401 1 0.436529964208603 experiment 0.828898481087199 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459873 chr7:142459866 nonsynonymous SNV 0.029 1 14 hm5C_associated_SNPs_21212 0 0 0 0 1 Cytosol 1 0.500231643920985 1 0.99953671215803 hm5C_site_22255 DeepMRMD:1;iRNA_m5C:0.99953671215803 22256 chr7 142459866 142459866 1 + G A COAD 142459877 + 142459857 142459897 41 GGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC GGCAACACTACGAGCTCTGGCGGTGAGTGGGACCCTTAGTC < 41bp 1 0.435787845153433 1 0.804041028022766 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459877 chr7:142459866 nonsynonymous SNV 0.029 1 10 hm5C_associated_SNPs_21213 0 0 0 0 1 Cytosol 1 0.500231643921102 0.391917943954468 0.999536712157796 hm5C_site_22256 DeepMRMD:0.391917943954468;iRNA_m5C:0.999536712157796 22257 chr7 139107012 139107012 1 + C T COAD 139107016 + 139106996 139107036 41 TCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCA TCGGAAAGATAAGAAGTGGTCCTATGAGAGTGCTAATGGCA < 41bp 1 0.104050782294515 1 0.122359156608582 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107016 chr7:139107012 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_21214 0 0 1 0 0 unknown 1 0.500231660221466 1 0.999536679557067 hm5C_site_22257 DeepMRMD:1;iRNA_m5C:0.999536679557067 22258 chr7 139107012 139107012 1 + C T COAD 139107017 + 139106997 139107037 41 CGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAG CGGAAAGATAAGAAGTGGTCCTATGAGAGTGCTAATGGCAG < 41bp 1 0.188202270018045 1 0.0912678241729736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107017 chr7:139107012 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_21215 0 0 1 0 0 unknown 1 0.500231552688633 1 0.999536894622735 hm5C_site_22258 DeepMRMD:1;iRNA_m5C:0.999536894622735 22259 chr7 139107012 139107012 1 + C T COAD 139107028 + 139107008 139107048 41 GAAGCGGTCCTATGAGAGTGCTAATGGCAGATCAGAAGACA GAAGTGGTCCTATGAGAGTGCTAATGGCAGATCAGAAGACA < 41bp 1 0.312909220296867 1 0.234880119562149 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107028 chr7:139107012 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_21216 0 0 1 0 0 unknown 1 0.500231636502989 1 0.999536726994023 hm5C_site_22259 DeepMRMD:1;iRNA_m5C:0.999536726994023 22260 chr16 30440430 30440430 1 + G A COAD 30440424 - 30440404 30440444 41 AGTTCCATCAGCCTCGGAATCTCCTCCTGGCCTTGGTTGGG AGTTCCATCAGCCTTGGAATCTCCTCCTGGCCTTGGTTGGG < 41bp 1 0.514390025088552 1 0.714076578617096 experiment 0.971219949822895 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCTPP1 ENSG00000179958 CDS Human protein_coding chr16:30440424 chr16:30440430 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_21217 0 0 1 0 2 Ribosome 1 0.500231640805856 0.571846842765808 0.999536718388287 hm5C_site_22260 DeepMRMD:0.571846842765808;iRNA_m5C:0.999536718388287 22261 chr9 37770015 37770015 1 + C T COAD 37769995 + 37769975 37770015 41 CCTTGGAAACCCTTGTGTACCTGACTCCTGACTCAGAACAC CCTTGGAAACCCTTGTGTACCTGACTCCTGACTCAGAACAT < 41bp 1 0.39773015293669 1 0.0446921586990356 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37769995 chr9:37770015 synonymous SNV . 0 41 hm5C_associated_SNPs_21218 0 0 1 1 2 chromatin 1 0.500231644041021 1 0.999536711917957 hm5C_site_22261 DeepMRMD:1;iRNA_m5C:0.999536711917957 22262 chr9 37770015 37770015 1 + C T COAD 37770013 + 37769993 37770033 41 ACCTGACTCCTGACTCAGAACACGGTATGTAGTTGAATGCA ACCTGACTCCTGACTCAGAACATGGTATGTAGTTGAATGCA < 41bp 1 0.446633434175581 1 0.44210210442543 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37770013 chr9:37770015 synonymous SNV . 0 23 hm5C_associated_SNPs_21219 0 0 1 1 2 chromatin 1 0.500231643921153 1 0.999536712157694 hm5C_site_22262 DeepMRMD:1;iRNA_m5C:0.999536712157694 22263 chr8 102381147 102381147 1 + G A COAD 102381132 + 102381112 102381152 41 TCTTGATTCCACGTTCCCTCCACAAAATGCCTGGCGAAGCC TCTTGATTCCACGTTCCCTCCACAAAATGCCTGGCAAAGCC < 41bp 1 0.690798084330363 1 0.592951118946075 experiment 0.618403831339274 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NACAP1 ENSG00000228224 ncRNA_exonic Human transcribed_processed_pseudogene chr8:102381132 chr8:102381147 . . 0 36 hm5C_associated_SNPs_21220 0 0 0 0 0 unknown 1 0.500231643963834 0.81409776210785 0.999536712072333 hm5C_site_22263 DeepMRMD:0.81409776210785;iRNA_m5C:0.999536712072333 22264 chr20 60962969 60962969 1 + T C COAD 60962981 + 60962961 60963001 41 TCGTAGGATGGTGAGTGTTTCCCTGGGCTTTGCTCATCACT TCGTAGGACGGTGAGTGTTTCCCTGGGCTTTGCTCATCACT < 41bp 1 0.279452257625002 1 0.118180990219116 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60962981 chr20:60962969 nonsynonymous SNV 0.999 3 9 hm5C_associated_SNPs_21221 0 0 1 0 2 Cytosol 1 0.500231643924904 1 0.999536712150191 hm5C_site_22264 DeepMRMD:1;iRNA_m5C:0.999536712150191 22265 chr1 156702198 156702198 1 + G A COAD 156702193 + 156702173 156702213 41 CTGGAGAACCCCAGCCAGAGCTCCCGACTAACAGCTCCATT CTGGAGAACCCCAGCCAGAGCTCCCAACTAACAGCTCCATT < 41bp 1 0.33149003806506 1 0.191849648952484 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702193 chr1:156702198 nonsynonymous SNV 0.996 0 26 hm5C_associated_SNPs_21222 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_22265 DeepMRMD:1;iRNA_m5C:0.999536712157815 22266 chr12 107712780 107712780 1 + T C COAD 107712763 + 107712743 107712783 41 TGGTGAGAACGCTGGAGGATCTGACGCTGGACTCGGGTTAT TGGTGAGAACGCTGGAGGATCTGACGCTGGACTCGGGCTAT < 41bp 1 0.42249427961149 1 0.403123080730438 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BTBD11 ENSG00000151136 CDS Human protein_coding chr12:107712763 chr12:107712780 synonymous SNV . 0 38 hm5C_associated_SNPs_21225 0 0 1 0 0 cytosol 1 0.500234537647414 1 0.999530924705173 hm5C_site_22266 DeepMRMD:1;iRNA_m5C:0.999530924705173 22267 chr20 44038674 44038674 1 + T C COAD 44038672 + 44038652 44038692 41 TCCTCCGACTCCTCCACCAACCTGCATAGCCCAAATCCAAG TCCTCCGACTCCTCCACCAACCCGCATAGCCCAAATCCAAG < 41bp 1 0.254600231356879 1 0.298536151647568 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DBNDD2 ENSG00000244274 CDS Human protein_coding chr20:44038672 chr20:44038674 nonsynonymous SNV 0.945 0 23 hm5C_associated_SNPs_21226 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22267 DeepMRMD:1;iRNA_m5C:0.999536712157815 22268 chr19 45165067 45165067 1 + G T COAD 45165047 + 45165027 45165067 41 GAGCAGAGAGAACAGCTCTTCCCAGGATCCACAGACAGAGG GAGCAGAGAGAACAGCTCTTCCCAGGATCCACAGACAGAGT < 41bp 1 0.250949652776723 1 0.14600870013237 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45165047 chr19:45165067 nonsynonymous SNV 0.002 3 41 hm5C_associated_SNPs_21227 0 0 1 0 1 Ribosome 1 0.500231644194038 1 0.999536711611924 hm5C_site_22268 DeepMRMD:1;iRNA_m5C:0.999536711611924 22269 chr19 45165067 45165067 1 + G T COAD 45165058 + 45165038 45165078 41 ACAGCTCTTCCCAGGATCCACAGACAGAGGGCACAAGGTGA ACAGCTCTTCCCAGGATCCACAGACAGAGTGCACAAGGTGA < 41bp 1 0.213965088100793 1 0.301909506320953 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45165058 chr19:45165067 nonsynonymous SNV 0.002 3 30 hm5C_associated_SNPs_21228 0 0 1 0 1 Ribosome 1 0.500219213152765 1 0.99956157369447 hm5C_site_22269 DeepMRMD:1;iRNA_m5C:0.99956157369447 22270 chr11 110035819 110035819 1 + G A COAD 110035817 + 110035797 110035837 41 CAACACATGCACCCTCACAGCCGCCTTAATCCTCAACCGTT CAACACATGCACCCTCACAGCCACCTTAATCCTCAACCGTT < 41bp 1 0.0790852910705506 1 0.0620906054973602 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035817 chr11:110035819 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_21231 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644290746 1 0.999536711418507 hm5C_site_22270 DeepMRMD:1;iRNA_m5C:0.999536711418507 22271 chr19 50906852 50906852 1 + A T COAD 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCATCTCTCGGGCCCAGACCCTCTAGGTGAGGGCT < 41bp 1 0.0683168216152871 1 0.208764910697937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906852 stopgain 0.996 1 30 hm5C_associated_SNPs_21232 0 0 1 3 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22271 DeepMRMD:1;iRNA_m5C:0.999536712157815 22272 chr19 50906852 50906852 1 + A T COAD 50906851 + 50906831 50906871 41 ATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT ATCTCTCGGGCCCAGACCCTCTAGGTGAGGGCTGGGCAGGT < 41bp 1 0.660981640971446 1 0.741741836071014 experiment 0.678036718057107 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906851 chr19:50906852 stopgain 0.996 1 22 hm5C_associated_SNPs_21233 0 0 1 3 1 Nucleus 1 0.500231631384375 0.516516327857972 0.999536737231249 hm5C_site_22272 DeepMRMD:0.516516327857972;iRNA_m5C:0.999536737231249 22273 chr16 31196294 31196294 1 + T C COAD 31196312 + 31196292 31196332 41 AGTGGTGGTGGCAGTGGTGGCGGTTATGGCAATCAAGACCA AGCGGTGGTGGCAGTGGTGGCGGTTATGGCAATCAAGACCA < 41bp 1 0.566816798755213 1 0.53452867269516 experiment 0.866366402489574 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control FUS ENSG00000089280 CDS Human protein_coding chr16:31196312 chr16:31196294 synonymous SNV . 0 3 hm5C_associated_SNPs_21234 0 0 1 0 1 Cytosol 1 0.500232306175172 0.93094265460968 0.999535387649656 hm5C_site_22273 DeepMRMD:0.93094265460968;iRNA_m5C:0.999535387649656 22274 chr12 3149347 3149347 1 + C T COAD 3149330 + 3149310 3149350 41 ACCGCATCCACCGGTCCCCGCTCTGTGAGTACATGATCAAC ACCGCATCCACCGGTCCCCGCTCTGTGAGTACATGATTAAC < 41bp 1 0.142867591569405 1 0.447629988193512 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3149330 chr12:3149347 synonymous SNV . 0 38 hm5C_associated_SNPs_21235 0 0 1 0 2 Cytosol 1 0.5002316439209 1 0.999536712158199 hm5C_site_22274 DeepMRMD:1;iRNA_m5C:0.999536712158199 22275 chr1 46871982 46871982 1 + T G COAD 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC CGAGCCCTGCGGTGTGAGGACATGTTCCGCTTGGACCCCAC < 41bp 1 0.413304750440139 1 0.131112545728683 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46871982 nonsynonymous SNV 0.971 1 11 hm5C_associated_SNPs_21236 0 0 0 0 2 Ribosome 1 0.500231643918482 1 0.999536712163036 hm5C_site_22275 DeepMRMD:1;iRNA_m5C:0.999536712163036 22276 chr14 102499697 102499697 1 + C T COAD 102499701 + 102499681 102499721 41 GACAACCAGCAGAAGGCCAACGAGGTGGAGCAGATGATCCG GACAACCAGCAGAAGGTCAACGAGGTGGAGCAGATGATCCG < 41bp 1 0.351939953558782 1 0.759434223175049 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499701 chr14:102499697 nonsynonymous SNV 0.997 1 17 hm5C_associated_SNPs_21237 0 0 1 0 1 Cytosol 1 0.50023164413223 0.481131553649902 0.999536711735539 hm5C_site_22276 DeepMRMD:0.481131553649902;iRNA_m5C:0.999536711735539 22277 chr17 77043896 77043896 1 + G A COAD 77043900 + 77043880 77043920 41 TACTGCTACGTGCCCGGCCTCTACTTCTTCAGCCTCAACGT TACTGCTACGTGCCCGACCTCTACTTCTTCAGCCTCAACGT < 41bp 1 0.334495279045461 1 0.0756476819515228 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77043900 chr17:77043896 nonsynonymous SNV 1.000 5 17 hm5C_associated_SNPs_21238 0 0 0 0 0 exosome 1 0.500231643633845 1 0.99953671273231 hm5C_site_22277 DeepMRMD:1;iRNA_m5C:0.99953671273231 22278 chr5 176522651 176522651 1 + C A COAD 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCAGCTCTCCTTCCCAGTCCTGGTCTCCT < 41bp 1 0.0443860503881013 1 0.074124276638031 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522651 nonsynonymous SNV 0.449 2 15 hm5C_associated_SNPs_21239 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_22278 DeepMRMD:1;iRNA_m5C:0.999536712157818 22279 chr14 68042182 68042182 1 + A C COAD 68042177 + 68042157 68042197 41 ATCTTCTACTACTATCGGAGCCATGAGGACAAGGTACTTCT ATCTTCTACTACTATCGGAGCCATGCGGACAAGGTACTTCT < 41bp 1 0.0319939013228803 1 0.0617979168891907 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042177 chr14:68042182 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_21240 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643924386 1 0.999536712151228 hm5C_site_22279 DeepMRMD:1;iRNA_m5C:0.999536712151228 22280 chr1 39927582 39927582 1 + C T COAD 39927585 + 39927565 39927605 41 CACCAAGTTAGAGATGACTGCTGTGGCTGACATTTTCGACC CACCAAGTTAGAGATGATTGCTGTGGCTGACATTTTCGACC < 41bp 1 0.176119403793199 1 0.0508017838001251 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39927585 chr1:39927582 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_21241 0 0 1 0 0 Endoplasmic reticulum 1 0.497166353843456 1 1 hm5C_site_22280 DeepMRMD:1;iRNA_m5C:1 22281 chr4 15008959 15008959 1 + C A COAD 15008941 + 15008921 15008961 41 TTCCCTAGCCTCTTCTGAAACAGTCTCCCTGGAGCAACCAT TTCCCTAGCCTCTTCTGAAACAGTCTCCCTGGAGCAACAAT < 41bp 1 0.169216283971315 1 0.0897606909275055 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15008941 chr4:15008959 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_21242 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22281 DeepMRMD:1;iRNA_m5C:0.999536712157815 22282 chr22 32445975 32445975 1 + G A COAD 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGACAGGCCGAAGTATGGT < 41bp 1 0.38383741670314 1 0.25482451915741 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445975 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_21243 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22282 DeepMRMD:1;iRNA_m5C:0.999536712157815 22283 chr11 65827422 65827422 1 + T G COAD 65827410 + 65827390 65827430 41 CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTGCCAGACT CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCGGCCAGACT < 41bp 1 0.164050399046785 1 0.0402333736419678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827410 chr11:65827422 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_21244 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22283 DeepMRMD:1;iRNA_m5C:0.999536712157815 22284 chr20 30898885 30898885 1 + T C COAD 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TCGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA < 41bp 1 0.509503283050138 1 0.368216991424561 experiment 0.980993433899724 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898885 synonymous SNV . 0 2 hm5C_associated_SNPs_21245 0 0 1 0 2 Ribosome 1 0.500231644311958 1 0.999536711376084 hm5C_site_22284 DeepMRMD:1;iRNA_m5C:0.999536711376084 22285 chr7 150765114 150765114 1 + C T COAD 150765104 + 150765084 150765124 41 CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG CACGTGGCCTCCCTCTCCTTCCGCAGTCTCTTGGAGCTCCG < 41bp 1 0.525630587876841 1 0.508496642112732 experiment 0.948738824246318 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765104 chr7:150765114 synonymous SNV . 0 31 hm5C_associated_SNPs_21246 0 0 1 0 1 Ribosome 1 0.50023200840788 0.983006715774536 0.999535983184241 hm5C_site_22285 DeepMRMD:0.983006715774536;iRNA_m5C:0.999535983184241 22286 chr7 150765114 150765114 1 + C T COAD 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACGTGGCCTCCCTCTCCTTCCGCAGTCTCTTGGAGCTCCGC < 41bp 1 0.488814112477215 1 0.685255408287048 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765114 synonymous SNV . 0 30 hm5C_associated_SNPs_21247 0 0 1 0 1 Ribosome 1 0.500231643920005 0.629489183425904 0.999536712159989 hm5C_site_22286 DeepMRMD:0.629489183425904;iRNA_m5C:0.999536712159989 22287 chr10 94757358 94757358 1 + T C COAD 94757363 + 94757343 94757383 41 AGTTTAACTTAGATGTCATACAGTGTGAATGTAAGTACTAT AGTTTAACTTAGATGCCATACAGTGTGAATGTAAGTACTAT < 41bp 1 0.20934229687425 1 0.141951501369476 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94757363 chr10:94757358 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_21248 0 0 1 1 1 Cytosol 1 0.500231644518437 1 0.999536710963126 hm5C_site_22287 DeepMRMD:1;iRNA_m5C:0.999536710963126 22288 chr22 42273351 42273351 1 + A G COAD 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCGG < 41bp 1 0.232544722911131 1 0.0381689667701721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273351 nonsynonymous SNV 0.996 0 40 hm5C_associated_SNPs_21249 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22288 DeepMRMD:1;iRNA_m5C:0.999536712157815 22289 chr13 111156531 111156531 1 + G A COAD 111156524 + 111156504 111156544 41 GGGCTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTG GGGCTCCAGGGAAAGCTGGGCCCCAAGAAAGAGGTGGTGTG < 41bp 1 0.104832986973733 1 0.163715392351151 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156524 chr13:111156531 nonsynonymous SNV 0.997 5 28 hm5C_associated_SNPs_21250 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_22289 DeepMRMD:1;iRNA_m5C:0.999536712157817 22290 chr13 111156531 111156531 1 + G A COAD 111156527 + 111156507 111156547 41 CTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTGTCT CTCCAGGGAAAGCTGGGCCCCAAGAAAGAGGTGGTGTGTCT < 41bp 1 0.366382643377201 1 0.36821186542511 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156527 chr13:111156531 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_21251 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22290 DeepMRMD:1;iRNA_m5C:0.999536712157815 22291 chrX 70344184 70344184 1 + T C COAD 70344193 + 70344173 70344213 41 TTTGATGATCCTGCCGATGACCCAGAGCACAAGGAGGCTGA TTTGATGATCCCGCCGATGACCCAGAGCACAAGGAGGCTGA < 41bp 1 0.400411652983458 1 0.101434111595154 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70344193 chrX:70344184 synonymous SNV . 0 12 hm5C_associated_SNPs_21252 0 0 1 0 1 Cytosol 1 0.500231643955641 1 0.999536712088719 hm5C_site_22291 DeepMRMD:1;iRNA_m5C:0.999536712088719 22292 chr11 71946463 71946463 1 + C T COAD 71946459 + 71946439 71946479 41 GCTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACC GCTCCATGAAGGTGCGGGTGCCCATGGAGCGCCTGGGCACC < 41bp 1 0.151934482487358 1 0.0787728726863861 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946459 chr11:71946463 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_21253 0 0 1 0 1 Cytosol 1 0.500231643506746 1 0.999536712986508 hm5C_site_22292 DeepMRMD:1;iRNA_m5C:0.999536712986508 22293 chr11 71946463 71946463 1 + C T COAD 71946460 + 71946440 71946480 41 CTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCC CTCCATGAAGGTGCGGGTGCCCATGGAGCGCCTGGGCACCC < 41bp 1 0.169982803613556 1 0.0974763035774231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946460 chr11:71946463 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_21254 0 0 1 0 1 Cytosol 1 0.50023164339589 1 0.99953671320822 hm5C_site_22293 DeepMRMD:1;iRNA_m5C:0.99953671320822 22294 chr11 71946463 71946463 1 + C T COAD 71946461 + 71946441 71946481 41 TCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCCG TCCATGAAGGTGCGGGTGCCCATGGAGCGCCTGGGCACCCG < 41bp 1 0.687574126205146 1 0.484471380710602 experiment 0.624851747589708 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946461 chr11:71946463 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_21255 0 0 1 0 1 Cytosol 1 0.500231643920652 1 0.999536712158696 hm5C_site_22294 DeepMRMD:1;iRNA_m5C:0.999536712158696 22295 chr11 71946463 71946463 1 + C T COAD 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG GTGCCCATGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG < 41bp 1 0.446711642456497 1 0.0574996471405029 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946463 nonsynonymous SNV 0.997 2 8 hm5C_associated_SNPs_21256 0 0 1 0 1 Cytosol 1 0.500214493099766 1 0.999571013800468 hm5C_site_22295 DeepMRMD:1;iRNA_m5C:0.999571013800468 22296 chr11 71946463 71946463 1 + C T COAD 71946478 + 71946458 71946498 41 GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG GCCCATGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG < 41bp 1 0.381503080346307 1 0.0913842916488647 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946478 chr11:71946463 nonsynonymous SNV 0.997 2 6 hm5C_associated_SNPs_21257 0 0 1 0 1 Cytosol 1 0.500231643894918 1 0.999536712210165 hm5C_site_22296 DeepMRMD:1;iRNA_m5C:0.999536712210165 22297 chr11 71946463 71946463 1 + C T COAD 71946479 + 71946459 71946499 41 CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG CCCATGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG < 41bp 1 0.187997047257427 1 0.478575736284256 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946479 chr11:71946463 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_21258 0 0 1 0 1 Cytosol 1 0.500231643931918 1 0.999536712136164 hm5C_site_22297 DeepMRMD:1;iRNA_m5C:0.999536712136164 22298 chrX 110951604 110951604 1 + C T COAD 110951619 + 110951599 110951639 41 TCTTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAACATATC TCTTTTGGGCCATTTCGGAGCAGGTAAAAGGAAAACATATC < 41bp 1 0.512082480574957 1 0.844595551490784 experiment 0.975835038850087 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110951619 chrX:110951604 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_21261 0 0 1 0 1 Cytosol 1 0.500231643921036 0.310808897018432 0.999536712157929 hm5C_site_22298 DeepMRMD:0.310808897018432;iRNA_m5C:0.999536712157929 22299 chr19 47491293 47491293 1 + A G COAD 47491274 + 47491254 47491294 41 ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGAT ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGGT < 41bp 1 0.557692493408008 1 0.621991693973541 experiment 0.884615013183983 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491274 chr19:47491293 nonsynonymous SNV 0.993 1 40 hm5C_associated_SNPs_21262 0 0 1 0 2 Ribosome 1 0.500231643921092 0.756016612052918 0.999536712157815 hm5C_site_22299 DeepMRMD:0.756016612052918;iRNA_m5C:0.999536712157815 22300 chr19 47491293 47491293 1 + A G COAD 47491283 + 47491263 47491303 41 ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT ATCTACCGGGTCAGCGGGAACAAGTCTGAGGTGGAGAGTCT < 41bp 1 0.333232060282846 1 0.214171260595322 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491283 chr19:47491293 nonsynonymous SNV 0.993 1 31 hm5C_associated_SNPs_21263 0 0 1 0 2 Ribosome 1 0.500231643922855 1 0.999536712154289 hm5C_site_22300 DeepMRMD:1;iRNA_m5C:0.999536712154289 22301 chr19 42856466 42856466 1 + G A COAD 42856468 + 42856448 42856488 41 CCTGCCCGCTGGGCATACGCCCGCTGTCCTGACGTGGATGA CCTGCCCGCTGGGCATACACCCGCTGTCCTGACGTGGATGA < 41bp 1 0.288310841058434 1 0.139083176851273 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42856468 chr19:42856466 nonsynonymous SNV 0.983 3 19 hm5C_associated_SNPs_21264 0 0 1 0 0 Endoplasmic reticulum 1 0.500231667352647 1 0.999536665294707 hm5C_site_22301 DeepMRMD:1;iRNA_m5C:0.999536665294707 22302 chr19 45260389 45260389 1 + C T COAD 45260397 + 45260377 45260417 41 CCGCTCACCTGGCGTGCGAGCACCGCAGCCCGACCTGCCTG CCGCTCACCTGGTGTGCGAGCACCGCAGCCCGACCTGCCTG < 41bp 1 0.685256673040648 1 0.23627308011055 experiment 0.629486653918703 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45260397 chr19:45260389 nonsynonymous SNV 0.982 4 13 hm5C_associated_SNPs_21267 0 0 0 0 1 chromatin 1 0.500231643895686 1 0.999536712208627 hm5C_site_22302 DeepMRMD:1;iRNA_m5C:0.999536712208627 22303 chr6 44219828 44219828 1 + G A COAD 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCGAGGTGGTATATATGACCGAGCCCATTGACAAGTACT < 41bp 1 0.310169364321415 1 0.176223248243332 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219828 nonsynonymous SNV 0.981 3 35 hm5C_associated_SNPs_21268 0 0 1 0 1 Nucleus 1 0.500231931863206 1 0.999536136273588 hm5C_site_22303 DeepMRMD:1;iRNA_m5C:0.999536136273588 22304 chr6 44219828 44219828 1 + G A COAD 44219827 + 44219807 44219847 41 TATATGACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCT TATATGACCGAGCCCATTGACAAGTACTGTGTGCAGCAGCT < 41bp 1 0.607353474663266 1 0.278866142034531 experiment 0.785293050673467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219827 chr6:44219828 nonsynonymous SNV 0.981 3 22 hm5C_associated_SNPs_21269 0 0 1 0 1 Nucleus 1 0.500231644435468 1 0.999536711129063 hm5C_site_22304 DeepMRMD:1;iRNA_m5C:0.999536711129063 22305 chr6 44219828 44219828 1 + G A COAD 44219833 + 44219813 44219853 41 ACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGA ACCGAGCCCATTGACAAGTACTGTGTGCAGCAGCTCAAGGA < 41bp 1 0.517155841469814 1 0.0437709391117096 experiment 0.965688317060373 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219833 chr6:44219828 nonsynonymous SNV 0.981 3 16 hm5C_associated_SNPs_21270 0 0 1 0 1 Nucleus 1 0.500354366681776 1 0.999291266636448 hm5C_site_22305 DeepMRMD:1;iRNA_m5C:0.999291266636448 22306 chr6 44219828 44219828 1 + G A COAD 44219840 + 44219820 44219860 41 CCATTGACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGAT CCATTGACAAGTACTGTGTGCAGCAGCTCAAGGAATTTGAT < 41bp 1 0.577618427337151 1 0.167949378490448 experiment 0.844763145325699 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219840 chr6:44219828 nonsynonymous SNV 0.981 3 9 hm5C_associated_SNPs_21271 0 0 1 0 1 Nucleus 1 0.500231300836486 1 0.999537398327027 hm5C_site_22306 DeepMRMD:1;iRNA_m5C:0.999537398327027 22307 chr19 36229283 36229283 1 + A G COAD 36229279 + 36229259 36229299 41 TCATCAACCACTCCTGTGAGCCCAACTGCTTCTCTCGGGTC TCATCAACCACTCCTGTGAGCCCAGCTGCTTCTCTCGGGTC < 41bp 1 0.0671866044702027 1 0.108133405447006 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36229279 chr19:36229283 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_21273 0 0 1 0 0 chromatin 1 0.50023164333893 1 0.999536713322139 hm5C_site_22307 DeepMRMD:1;iRNA_m5C:0.999536713322139 22308 chr5 153709265 153709265 1 + G A COAD 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCAAGA < 41bp 1 0.648627647382025 1 0.919338941574097 experiment 0.702744705235951 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709265 nonsynonymous SNV 0.910 3 38 hm5C_associated_SNPs_21274 0 0 0 0 1 Ribosome 1 0.500226755822165 0.161322116851806 0.99954648835567 hm5C_site_22308 DeepMRMD:0.161322116851806;iRNA_m5C:0.99954648835567 22309 chr1 32691779 32691779 1 + G A COAD 32691784 + 32691764 32691804 41 GACTCCAGGAAAGCAGCTGGCCCTTCTCAAGACCAATTCGG GACTCCAGGAAAGCAACTGGCCCTTCTCAAGACCAATTCGG < 41bp 1 0.136060737607683 1 0.0296127200126648 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3I ENSG00000084623 CDS Human protein_coding chr1:32691784 chr1:32691779 synonymous SNV . 0 16 hm5C_associated_SNPs_21275 0 0 1 0 1 Ribosome 1 0.500231643921143 1 0.999536712157714 hm5C_site_22309 DeepMRMD:1;iRNA_m5C:0.999536712157714 22310 chr7 99702556 99702556 1 + C T COAD 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GAGATTCGGCTCAAGAGCTTCCTTCCTAGTGGCTCTGGTGA < 41bp 1 0.0174602120797548 1 0.0800391137599945 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702556 synonymous SNV . 0 30 hm5C_associated_SNPs_21276 0 0 1 0 2 Cytosol 1 0.500230938238141 1 0.999538123523718 hm5C_site_22310 DeepMRMD:1;iRNA_m5C:0.999538123523718 22311 chr22 23438376 23438376 1 + C T COAD 23438366 + 23438346 23438386 41 ACTACCTGAACGACCTGGAGCGCATCGCCGCAGCTGACTAT ACTACCTGAACGACCTGGAGCGCATCGCCGTAGCTGACTAT < 41bp 1 0.172141018894037 1 0.0332103967666626 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438366 chr22:23438376 nonsynonymous SNV 0.289 3 31 hm5C_associated_SNPs_21277 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_22311 DeepMRMD:1;iRNA_m5C:0.999536712157814 22312 chr11 75280000 75280000 1 + C T COAD 75279988 + 75279968 75280008 41 TCCGCTCCTCTCCCAGGCCTCTACAACTACTACGACGACGA TCCGCTCCTCTCCCAGGCCTCTACAACTACTATGACGACGA < 41bp 1 0.557865083505675 1 0.852529644966125 experiment 0.88426983298865 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279988 chr11:75280000 synonymous SNV . 0 33 hm5C_associated_SNPs_21278 0 0 1 0 1 Ribosome 1 0.500231643921092 0.29494071006775 0.999536712157815 hm5C_site_22312 DeepMRMD:0.29494071006775;iRNA_m5C:0.999536712157815 22313 chr7 128852115 128852115 1 + G A COAD 128852114 + 128852094 128852134 41 GGACTCTTGCCGACAGGGAGCGTGGACCCTGGTCTCCAACC GGACTCTTGCCGACAGGGAGCATGGACCCTGGTCTCCAACC < 41bp 1 0.383277572430966 1 0.288225680589676 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128852114 chr7:128852115 synonymous SNV . 0 22 hm5C_associated_SNPs_21280 0 0 0 0 0 cytosol 1 0.500231643921 1 0.999536712158 hm5C_site_22313 DeepMRMD:1;iRNA_m5C:0.999536712158 22314 chr15 91035818 91035818 1 + C T COAD 91035817 + 91035797 91035837 41 GTACCGACAGAGGAGAAAGGCCGAACTAGTGAAACTGCAAC GTACCGACAGAGGAGAAAGGCTGAACTAGTGAAACTGCAAC < 41bp 1 0.557911884187812 1 0.233673244714737 experiment 0.884176231624375 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:91035817 chr15:91035818 synonymous SNV . 0 22 hm5C_associated_SNPs_21281 0 0 1 0 1 Nucleus 1 0.500231650257082 1 0.999536699485835 hm5C_site_22314 DeepMRMD:1;iRNA_m5C:0.999536699485835 22315 chr7 150765102 150765102 1 + T C COAD 150765104 + 150765084 150765124 41 CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG CACGTGGCCTCCCTCTCCCTCCGCAGTCTCCTGGAGCTCCG < 41bp 1 0.595423292104976 1 0.553608179092407 experiment 0.809153415790047 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765104 chr7:150765102 nonsynonymous SNV 0.996 2 19 hm5C_associated_SNPs_21283 0 0 1 0 1 Ribosome 1 0.500231612287072 0.892783641815186 0.999536775425856 hm5C_site_22315 DeepMRMD:0.892783641815186;iRNA_m5C:0.999536775425856 22316 chr7 150765102 150765102 1 + T C COAD 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACGTGGCCTCCCTCTCCCTCCGCAGTCTCCTGGAGCTCCGC < 41bp 1 0.442074787249162 1 0.760238587856293 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765102 nonsynonymous SNV 0.996 2 18 hm5C_associated_SNPs_21284 0 0 1 0 1 Ribosome 1 0.500231643921092 0.479522824287414 0.999536712157815 hm5C_site_22316 DeepMRMD:0.479522824287414;iRNA_m5C:0.999536712157815 22317 chr19 1453530 1453530 1 + C T COAD 1453533 + 1453513 1453553 41 GAGGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAG GAGGGCAGCCCAGTACATGGCTCCGGGCCCTCCAAGGACAG < 41bp 1 0.389436554654945 1 0.553388714790344 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453533 chr19:1453530 synonymous SNV . 0 18 hm5C_associated_SNPs_21285 0 0 0 0 1 nucleolus 1 0.500231643921092 0.893222570419312 0.999536712157815 hm5C_site_22317 DeepMRMD:0.893222570419312;iRNA_m5C:0.999536712157815 22318 chr19 1453530 1453530 1 + C T COAD 1453535 + 1453515 1453555 41 GGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCT GGGCAGCCCAGTACATGGCTCCGGGCCCTCCAAGGACAGCT < 41bp 1 0.187054642813911 1 0.7112717628479 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453535 chr19:1453530 synonymous SNV . 0 16 hm5C_associated_SNPs_21286 0 0 0 0 1 nucleolus 1 0.500231643921093 0.5774564743042 0.999536712157815 hm5C_site_22318 DeepMRMD:0.5774564743042;iRNA_m5C:0.999536712157815 22319 chr19 1453530 1453530 1 + C T COAD 1453536 + 1453516 1453556 41 GGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTT GGCAGCCCAGTACATGGCTCCGGGCCCTCCAAGGACAGCTT < 41bp 1 0.196943024783374 1 0.668942213058472 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453536 chr19:1453530 synonymous SNV . 0 15 hm5C_associated_SNPs_21287 0 0 0 0 1 nucleolus 1 0.500231643921092 0.662115573883056 0.999536712157815 hm5C_site_22319 DeepMRMD:0.662115573883056;iRNA_m5C:0.999536712157815 22320 chr19 1453530 1453530 1 + C T COAD 1453540 + 1453520 1453560 41 GCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGG GCCCAGTACATGGCTCCGGGCCCTCCAAGGACAGCTTTGGG < 41bp 1 0.013961888140364 1 0.0636919438838959 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453540 chr19:1453530 synonymous SNV . 0 11 hm5C_associated_SNPs_21288 0 0 0 0 1 nucleolus 1 0.500231643920121 1 0.999536712159758 hm5C_site_22320 DeepMRMD:1;iRNA_m5C:0.999536712159758 22321 chr19 1453530 1453530 1 + C T COAD 1453541 + 1453521 1453561 41 CCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGGG CCCAGTACATGGCTCCGGGCCCTCCAAGGACAGCTTTGGGG < 41bp 1 0.01441357905748 1 0.0920652747154236 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453541 chr19:1453530 synonymous SNV . 0 10 hm5C_associated_SNPs_21289 0 0 0 0 1 nucleolus 1 0.500231643921578 1 0.999536712156845 hm5C_site_22321 DeepMRMD:1;iRNA_m5C:0.999536712156845 22322 chrX 105855826 105855826 1 + G A COAD 105855825 + 105855805 105855845 41 AACTCCCTTCAGAAATAGAGCGCACCAGGAGAAACCAGAGA AACTCCCTTCAGAAATAGAGCACACCAGGAGAAACCAGAGA < 41bp 1 0.20152241386691 1 0.120793581008911 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105855825 chrX:105855826 synonymous SNV . 0 22 hm5C_associated_SNPs_21291 0 0 1 0 0 nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_22322 DeepMRMD:1;iRNA_m5C:0.999536712157813 22323 chr19 17887057 17887057 1 + G A COAD 17887060 + 17887040 17887080 41 CCCACTTTGTCCACAGGGCACCATGAAACGCCATTCTTCAC CCCACTTTGTCCACAGGACACCATGAAACGCCATTCTTCAC < 41bp 1 0.0907364529152056 1 0.0377376675605774 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887060 chr19:17887057 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_21293 0 0 1 0 2 Cytosol 1 0.500223896346995 1 0.999552207306009 hm5C_site_22323 DeepMRMD:1;iRNA_m5C:0.999552207306009 22324 chr11 45882569 45882569 1 + C T COAD 45882565 + 45882545 45882585 41 ACGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT ACGACGAGACCTACGGCGTGCCCTTCCTGGAGGAGCTGGGT < 41bp 1 0.038091160818984 1 0.0399195849895477 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882565 chr11:45882569 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_21294 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_22324 DeepMRMD:1;iRNA_m5C:0.999536712157815 22325 chr11 45882569 45882569 1 + C T COAD 45882566 + 45882546 45882586 41 CGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG CGACGAGACCTACGGCGTGCCCTTCCTGGAGGAGCTGGGTG < 41bp 1 0.0187387071984877 1 0.0332096219062805 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882566 chr11:45882569 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_21295 0 0 1 0 1 Nucleus 1 0.500231643921108 1 0.999536712157785 hm5C_site_22325 DeepMRMD:1;iRNA_m5C:0.999536712157785 22326 chr19 44732672 44732672 1 + G T COAD 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGATG < 41bp 1 0.657877746646365 1 0.236258119344711 experiment 0.68424450670727 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732672 nonsynonymous SNV 0.888 2 40 hm5C_associated_SNPs_21296 0 0 1 0 3 cytosol 1 0.500299351091902 1 0.999401297816197 hm5C_site_22326 DeepMRMD:1;iRNA_m5C:0.999401297816197 22327 chr12 14650704 14650704 1 + C T COAD 14650689 + 14650669 14650709 41 TCTCTGCCTCAGAAGCCACACTTGAAGTTAGCACGCGTTCA TCTCTGCCTCAGAAGCCACACTTGAAGTTAGCACGTGTTCA < 41bp 1 0.629786384310527 1 0.285364985466003 experiment 0.740427231378946 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14650689 chr12:14650704 synonymous SNV . 0 36 hm5C_associated_SNPs_21297 0 0 1 0 0 Cytosol 1 0.500231616404586 1 0.999536767190827 hm5C_site_22327 DeepMRMD:1;iRNA_m5C:0.999536767190827 22328 chr11 34129840 34129840 1 + G T COAD 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTAGCTGAGCGGCAAATATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.271759313582372 1 0.109573721885681 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129840 nonsynonymous SNV 0.994 4 18 hm5C_associated_SNPs_21298 0 0 1 0 2 chromatin 1 0.500231643919245 1 0.99953671216151 hm5C_site_22328 DeepMRMD:1;iRNA_m5C:0.99953671216151 22329 chr15 29385292 29385292 1 + G A COAD 29385286 + 29385266 29385306 41 GCCCTCCTTCAGTTCCAGGGCCCTGCGAACCAGAAGACCTC GCCCTCCTTCAGTTCCAGGGCCCTGCAAACCAGAAGACCTC < 41bp 1 0.0674557265350844 1 0.403642982244492 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APBA2 ENSG00000034053 CDS Human protein_coding chr15:29385286 chr15:29385292 nonsynonymous SNV 0.986 3 27 hm5C_associated_SNPs_21299 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22329 DeepMRMD:1;iRNA_m5C:0.999536712157815 22330 chr4 146576305 146576305 1 + C T COAD 146576316 + 146576296 146576336 41 TAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATCTC TAGGTAATTTGTATTTCTGCCCGAAGTGGAGAGGGGATCTC < 41bp 1 0.558577947267233 1 0.105020552873611 experiment 0.882844105465534 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMAA ENSG00000151611 CDS Human protein_coding chr4:146576316 chr4:146576305 nonsynonymous SNV 0.997 5 10 hm5C_associated_SNPs_21300 0 0 0 0 1 nucleoplasm 1 0.500231555729819 1 0.999536888540361 hm5C_site_22330 DeepMRMD:1;iRNA_m5C:0.999536888540361 22331 chr15 89169654 89169654 1 + A G COAD 89169639 + 89169619 89169659 41 GGTCCTCCCCACTGCCCACCCCTTTCGGGGCAGCGACAGCA GGTCCTCCCCACTGCCCACCCCTTTCGGGGCAGCGGCAGCA < 41bp 1 0.0477981981988508 1 0.057218998670578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AEN ENSG00000181026 CDS Human protein_coding chr15:89169639 chr15:89169654 nonsynonymous SNV 0.000 0 36 hm5C_associated_SNPs_21301 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22331 DeepMRMD:1;iRNA_m5C:0.999536712157815 22332 chr17 37650845 37650845 1 + C T COAD 37650826 + 37650806 37650846 41 CTAGACAATGAGAAAGAGGGCTTCCCAATCACAGCCATTCG CTAGACAATGAGAAAGAGGGCTTCCCAATCACAGCCATTTG < 41bp 1 0.0615049326231982 1 0.0350470244884491 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37650826 chr17:37650845 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_21302 0 0 1 0 1 Nucleus 1 0.500231643752127 1 0.999536712495747 hm5C_site_22332 DeepMRMD:1;iRNA_m5C:0.999536712495747 22333 chr1 78325044 78325044 1 + A G COAD 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGAGACAGTGATTTTCTTGCCAAGCTTCACTGTATTCGACA < 41bp 1 0.399853747371745 1 0.193935185670853 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325044 synonymous SNV . 0 24 hm5C_associated_SNPs_21303 0 0 0 1 2 unknown 1 0.500231643183078 1 0.999536713633845 hm5C_site_22333 DeepMRMD:1;iRNA_m5C:0.999536713633845 22334 chr1 228470930 228470930 1 + C T COAD 228470936 + 228470916 228470956 41 CTCAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC CTCAAGGACGCGGGTGAGTACACGTGTGAGGTGGAGGCTTC < 41bp 1 0.202268180374265 1 0.262878060340881 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228470936 chr1:228470930 synonymous SNV . 0 15 hm5C_associated_SNPs_21304 0 0 0 0 1 Ribosome 1 0.500231644083304 1 0.999536711833392 hm5C_site_22334 DeepMRMD:1;iRNA_m5C:0.999536711833392 22335 chr2 203421084 203421084 1 + G A COAD 203421065 + 203421045 203421085 41 GTCTTGTGGACAGGAGGGAACGGCCACTAGAAGGTGGCCGA GTCTTGTGGACAGGAGGGAACGGCCACTAGAAGGTGGCCAA < 41bp 1 0.33024295495577 1 0.510963976383209 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BMPR2 ENSG00000204217 CDS Human protein_coding chr2:203421065 chr2:203421084 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_21305 0 0 1 0 0 Ribosome 1 0.500231643921092 0.978072047233582 0.999536712157815 hm5C_site_22335 DeepMRMD:0.978072047233582;iRNA_m5C:0.999536712157815 22336 chr1 158988024 158988024 1 + G A COAD 158988036 + 158988016 158988056 41 CAGAACCCGAAAACAGTGGCCAAATGTCAGGTAACTCCCAG CAGAACCCAAAAACAGTGGCCAAATGTCAGGTAACTCCCAG < 41bp 1 0.272767642410078 1 0.690911531448364 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout IFI16 ENSG00000163565 CDS Human protein_coding chr1:158988036 chr1:158988024 synonymous SNV . 0 9 hm5C_associated_SNPs_21308 0 0 0 0 1 exosome 1 0.500231654974055 0.618176937103272 0.99953669005189 hm5C_site_22336 DeepMRMD:0.618176937103272;iRNA_m5C:0.99953669005189 22337 chr5 95091242 95091242 1 + C T COAD 95091260 + 95091240 95091280 41 TGCGCTGTAAGCCATGTTTTCATGCTGCTTTTCAATGTGAA TGTGCTGTAAGCCATGTTTTCATGCTGCTTTTCAATGTGAA < 41bp 1 0.226471486182456 1 0.0877743363380432 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RHOBTB3 ENSG00000164292 CDS Human protein_coding chr5:95091260 chr5:95091242 synonymous SNV . 0 3 hm5C_associated_SNPs_21309 0 0 1 0 0 Cytosol 1 0.50106267195672 1 0.997874656086559 hm5C_site_22337 DeepMRMD:1;iRNA_m5C:0.997874656086559 22338 chr1 86047742 86047742 1 + G T COAD 86047751 + 86047731 86047771 41 TGTGTCCCCAAGAACTATCTCTCCCCAACTTGGGCTGTCCC TGTGTCCCCAATAACTATCTCTCCCCAACTTGGGCTGTCCC < 41bp 1 0.317517985152621 1 0.421934574842453 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86047751 chr1:86047742 stopgain 1.000 1 12 hm5C_associated_SNPs_21310 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164391793 1 0.999536712164141 hm5C_site_22338 DeepMRMD:1;iRNA_m5C:0.999536712164141 22339 chr1 47838753 47838753 1 + G A COAD 47838752 + 47838732 47838772 41 GGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAA GGGAAGGCAGATGTATCTTTCATTCTCTTTTTTGACTGTAA < 41bp 1 0.120365995108156 1 0.227583110332489 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838752 chr1:47838753 nonsynonymous SNV 0.989 1 22 hm5C_associated_SNPs_21311 0 0 1 2 1 chromatin 1 0.500231643959699 1 0.999536712080603 hm5C_site_22339 DeepMRMD:1;iRNA_m5C:0.999536712080603 22340 chr5 72192904 72192904 1 + T G COAD 72192921 + 72192901 72192941 41 ATATTCCTATGGTGTTGCACCAGCTTGTAGAAATCATTAAC ATAGTCCTATGGTGTTGCACCAGCTTGTAGAAATCATTAAC < 41bp 1 0.356331978146424 1 0.0981483161449432 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72192921 chr5:72192904 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_21312 0 0 1 0 2 Cytosol 1 0.500231656955431 1 0.999536686089138 hm5C_site_22340 DeepMRMD:1;iRNA_m5C:0.999536686089138 22341 chr12 44166753 44166753 1 + A G COAD 44166754 + 44166734 44166774 41 TTATGAATTGAAGAATGTCACAAATAACTTTGATGAACGAC TTATGAATTGAAGAATGTCGCAAATAACTTTGATGAACGAC < 41bp 1 0.198814942705288 1 0.571263611316681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166754 chr12:44166753 nonsynonymous SNV 0.945 4 20 hm5C_associated_SNPs_21313 0 0 0 0 1 Cytosol 1 0.500228630839219 0.857472777366638 0.999542738321561 hm5C_site_22341 DeepMRMD:0.857472777366638;iRNA_m5C:0.999542738321561 22342 chr3 25542760 25542760 1 + C T COAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATTGATGCCAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.258392889448804 1 0.0941940248012543 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542760 stopgain 1.000 1 10 hm5C_associated_SNPs_21314 0 0 1 0 2 nucleoplasm 1 0.500231643921085 1 0.99953671215783 hm5C_site_22342 DeepMRMD:1;iRNA_m5C:0.99953671215783 22343 chr12 62954478 62954478 1 + G A COAD 62954463 + 62954443 62954483 41 TGTGCCTGTTCTTATAGGGCCCATATCAGGCATGAGCAGGC TGTGCCTGTTCTTATAGGGCCCATATCAGGCATGAACAGGC < 41bp 1 0.074474255802386 1 0.140418887138367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62954463 chr12:62954478 nonsynonymous SNV 0.957 0 36 hm5C_associated_SNPs_21315 0 0 1 0 0 Nucleus 1 0.500231645549839 1 0.999536708900323 hm5C_site_22343 DeepMRMD:1;iRNA_m5C:0.999536708900323 22344 chr19 1440375 1440375 1 + G A COAD 1440359 + 1440339 1440379 41 CTCCCGCAGCCCGAGATGATCGGCCACTACCTGGGCGAGTT CTCCCGCAGCCCGAGATGATCGGCCACTACCTGGGCAAGTT < 41bp 1 0.619343727402533 1 0.65852963924408 experiment 0.761312545194935 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440359 chr19:1440375 nonsynonymous SNV 0.999 1 37 hm5C_associated_SNPs_21316 0 0 1 0 1 Ribosome 1 0.500231643921092 0.68294072151184 0.999536712157815 hm5C_site_22344 DeepMRMD:0.68294072151184;iRNA_m5C:0.999536712157815 22345 chr2 174224139 174224139 1 + G A COAD 174224138 + 174224118 174224158 41 CCAAGGCCAGATGTCACTAACGAACTGGCCGGTATTTTTCA CCAAGGCCAGATGTCACTAACAAACTGGCCGGTATTTTTCA < 41bp 1 0.290104720876645 1 0.331636011600494 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174224138 chr2:174224139 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_21317 0 0 1 0 2 Nucleus 1 0.500231643921918 1 0.999536712156164 hm5C_site_22345 DeepMRMD:1;iRNA_m5C:0.999536712156164 22346 chr19 47423208 47423208 1 + G A COAD 47423199 + 47423179 47423219 41 ACGAGGCCCACTTAGAGAAGCTGAGGAACGAAAGGAAAAGA ACGAGGCCCACTTAGAGAAGCTGAGGAACAAAAGGAAAAGA < 41bp 1 0.338862960443042 1 0.266340672969818 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47423199 chr19:47423208 nonsynonymous SNV 0.956 3 30 hm5C_associated_SNPs_21318 0 0 1 0 0 Ribosome 1 0.500231656560818 1 0.999536686878364 hm5C_site_22346 DeepMRMD:1;iRNA_m5C:0.999536686878364 22347 chr19 47423208 47423208 1 + G A COAD 47423207 + 47423187 47423227 41 CACTTAGAGAAGCTGAGGAACGAAAGGAAAAGAGTTGAGAT CACTTAGAGAAGCTGAGGAACAAAAGGAAAAGAGTTGAGAT < 41bp 1 0.497705897906094 1 0.481351733207703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47423207 chr19:47423208 nonsynonymous SNV 0.956 3 22 hm5C_associated_SNPs_21319 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22347 DeepMRMD:1;iRNA_m5C:0.999536712157815 22348 chr11 62655936 62655936 1 + G A COAD 62655920 + 62655900 62655940 41 CGTTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC CGTTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCACCAC < 41bp 1 0.39923941876713 1 0.177858710289001 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62655920 chr11:62655936 nonsynonymous SNV 0.788 4 37 hm5C_associated_SNPs_21320 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22348 DeepMRMD:1;iRNA_m5C:0.999536712157815 22349 chr6 90331663 90331663 1 + G A COAD 90331647 + 90331627 90331667 41 TTTGCCTCCTTCAGGTCTTGCGCTTCAGTCGTGGGCGAAGC TTTGCCTCCTTCAGGTCTTGCGCTTCAGTCGTGGGCAAAGC < 41bp 1 0.139754476697938 1 0.110112637281418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKRD6 ENSG00000083099;ENSG00000135299 CDS Human other chr6:90331647 chr6:90331663 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_21321 0 0 0 0 2 exosome 1 0.500231632607303 1 0.999536734785393 hm5C_site_22349 DeepMRMD:1;iRNA_m5C:0.999536734785393 22350 chr19 50880880 50880880 1 + G A COAD 50880899 + 50880879 50880919 41 CGAGTTCCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT CAAGTTCCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT < 41bp 1 0.169732604720986 1 0.564473986625671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50880899 chr19:50880880 synonymous SNV . 0 2 hm5C_associated_SNPs_21322 0 0 1 0 2 Ribosome 1 0.500231643921304 0.871052026748658 0.999536712157392 hm5C_site_22350 DeepMRMD:0.871052026748658;iRNA_m5C:0.999536712157392 22351 chr1 223943197 223943197 1 + A G COAD 223943200 + 223943180 223943220 41 AGACACATTCTGGATGAACCCTCAGTACCTGATCAAGCTGG AGACACATTCTGGATGAGCCCTCAGTACCTGATCAAGCTGG < 41bp 1 0.567696243996293 1 0.356120467185974 experiment 0.864607512007414 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943200 chr1:223943197 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_21323 0 0 0 0 1 Ribosome 1 0.500231643921115 1 0.999536712157771 hm5C_site_22351 DeepMRMD:1;iRNA_m5C:0.999536712157771 22352 chr1 223943197 223943197 1 + A G COAD 223943207 + 223943187 223943227 41 TTCTGGATGAACCCTCAGTACCTGATCAAGCTGGAGGAGGA TTCTGGATGAGCCCTCAGTACCTGATCAAGCTGGAGGAGGA < 41bp 1 0.431492126026889 1 0.0527171492576599 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943207 chr1:223943197 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_21324 0 0 0 0 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_22352 DeepMRMD:1;iRNA_m5C:0.999536712157818 22353 chr15 64448279 64448279 1 + G T COAD 64448270 - 64448250 64448290 41 AAGGATGTGATCATCGCAGACTGCGGCAAGATCGAGGTGGA AAGGATGTGATAATCGCAGACTGCGGCAAGATCGAGGTGGA < 41bp 1 0.683510562815277 1 0.49492484331131 experiment 0.632978874369446 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPIB ENSG00000166794 CDS Human protein_coding chr15:64448270 chr15:64448279 synonymous SNV . 0 12 hm5C_associated_SNPs_21326 0 0 1 0 1 Ribosome 1 0.500231643911454 1 0.999536712177091 hm5C_site_22353 DeepMRMD:1;iRNA_m5C:0.999536712177091 22354 chr15 64448279 64448279 1 + G T COAD 64448294 - 64448274 64448314 41 ACAGACAGCCGGGATAAACCCCTGAAGGATGTGATCATCGC ACAGACAGCCGGGATAAACCCCTGAAGGATGTGATAATCGC < 41bp 1 0.576292870098663 1 0.144448757171631 experiment 0.847414259802674 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448294 chr15:64448279 synonymous SNV . 0 36 hm5C_associated_SNPs_21328 0 0 1 0 1 Ribosome 1 0.500231643939804 1 0.999536712120392 hm5C_site_22354 DeepMRMD:1;iRNA_m5C:0.999536712120392 22355 chr1 110210762 110210762 1 + A G COAD 110210743 + 110210723 110210763 41 ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTGGAA ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTGGGA < 41bp 1 0.629465081300299 1 0.130838602781296 experiment 0.741069837399402 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110210743 chr1:110210762 nonsynonymous SNV 0.044 0 40 hm5C_associated_SNPs_21329 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_22355 DeepMRMD:1;iRNA_m5C:0.999536712157814 22356 chr7 44741173 44741173 1 + G A COAD 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCACCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC < 41bp 1 0.198264067020326 1 0.533280730247498 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741173 nonsynonymous SNV 0.998 5 3 hm5C_associated_SNPs_21330 0 0 1 0 2 Nucleus 1 0.500231646785633 0.933438539505004 0.999536706428734 hm5C_site_22356 DeepMRMD:0.933438539505004;iRNA_m5C:0.999536706428734 22357 chr10 5494322 5494322 1 + C A COAD 5494328 + 5494308 5494348 41 TTTCTTTTTTAAGTCATTTACCCTTCGTGGTGACCACAGAT TTTCTTTTTTAAGTAATTTACCCTTCGTGGTGACCACAGAT < 41bp 1 0.0731852432105732 1 0.0642848014831543 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NET1 ENSG00000173848 CDS Human protein_coding chr10:5494328 chr10:5494322 stopgain 0.998 0 15 hm5C_associated_SNPs_21331 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157813 hm5C_site_22357 DeepMRMD:1;iRNA_m5C:0.999536712157813 22358 chr6 29911295 29911295 1 + C T COAD 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAATGG < 41bp 1 0.545551802394517 1 0.125044256448746 experiment 0.908896395210966 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911295 synonymous SNV . 0 39 hm5C_associated_SNPs_21332 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921438 1 0.999536712157123 hm5C_site_22358 DeepMRMD:1;iRNA_m5C:0.999536712157123 22359 chr6 29911295 29911295 1 + C T COAD 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAATGGG < 41bp 1 0.403768716019174 1 0.404350399971008 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911295 synonymous SNV . 0 38 hm5C_associated_SNPs_21333 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22359 DeepMRMD:1;iRNA_m5C:0.999536712157815 22360 chr1 156761579 156761579 1 + G A COAD 156761563 + 156761543 156761583 41 CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACAAAGC < 41bp 1 0.461211641393345 1 0.400873988866806 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156761563 chr1:156761579 nonsynonymous SNV 0.999 3 37 hm5C_associated_SNPs_21335 0 0 0 0 2 Ribosome 1 0.500231643928529 1 0.999536712142941 hm5C_site_22360 DeepMRMD:1;iRNA_m5C:0.999536712142941 22361 chr8 133855005 133855005 1 + A G COAD 133855017 + 133854997 133855037 41 TCTCGCAGACCCTGGGAGCTCAGATGATGATGATGTTAGTA TCTCGCAGGCCCTGGGAGCTCAGATGATGATGATGTTAGTA < 41bp 1 0.620450167142119 1 0.477499812841415 experiment 0.759099665715762 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133855017 chr8:133855005 nonsynonymous SNV 0.974 1 9 hm5C_associated_SNPs_21336 0 0 1 0 0 Nucleus 1 0.500233692297209 1 0.999532615405581 hm5C_site_22361 DeepMRMD:1;iRNA_m5C:0.999532615405581 22362 chr2 233708895 233708895 1 + C T COAD 233708896 + 233708876 233708916 41 GAGATCCAGCAGGAAGAGGCCAGGCAAATGCAAAAGCAGCA GAGATCCAGCAGGAAGAGGTCAGGCAAATGCAAAAGCAGCA < 41bp 1 0.298930393227144 1 0.730758666992188 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233708896 chr2:233708895 nonsynonymous SNV 0.998 1 20 hm5C_associated_SNPs_21337 0 0 1 0 1 Nucleus 1 0.500231760610129 0.538482666015624 0.999536478779743 hm5C_site_22362 DeepMRMD:0.538482666015624;iRNA_m5C:0.999536478779743 22363 chr7 36492190 36492190 1 + A C COAD 36492185 + 36492165 36492205 41 CTCTGGCAACCTGATGCTTGCTACAAACCTATTGGAAAGCC CTCTGGCAACCTGATGCTTGCTACACACCTATTGGAAAGCC < 41bp 1 0.544152693656564 1 0.278478860855103 experiment 0.911694612686872 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36492185 chr7:36492190 nonsynonymous SNV 0.952 2 26 hm5C_associated_SNPs_21338 0 0 1 0 0 Nucleus 1 0.500231643922627 1 0.999536712154746 hm5C_site_22363 DeepMRMD:1;iRNA_m5C:0.999536712154746 22364 chr7 36492190 36492190 1 + A C COAD 36492192 + 36492172 36492212 41 AACCTGATGCTTGCTACAAACCTATTGGAAAGCCTTAAACC AACCTGATGCTTGCTACACACCTATTGGAAAGCCTTAAACC < 41bp 1 0.0867194734808798 1 0.0860513746738434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36492192 chr7:36492190 nonsynonymous SNV 0.952 2 19 hm5C_associated_SNPs_21339 0 0 1 0 0 Nucleus 1 0.50023164378438 1 0.99953671243124 hm5C_site_22364 DeepMRMD:1;iRNA_m5C:0.99953671243124 22365 chr9 37501727 37501727 1 + C T COAD 37501742 + 37501722 37501762 41 AATTTCGGATTCTATGAAGGCGAAGATTACTGCATATGTGA AATTTTGGATTCTATGAAGGCGAAGATTACTGCATATGTGA < 41bp 1 0.342011760581501 1 0.340872526168823 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37501742 chr9:37501727 nonsynonymous SNV 0.989 4 6 hm5C_associated_SNPs_21340 0 0 1 0 1 Ribosome 1 0.500231643915805 1 0.999536712168389 hm5C_site_22365 DeepMRMD:1;iRNA_m5C:0.999536712168389 22366 chr6 57012762 57012762 1 + T C COAD 57012758 + 57012738 57012778 41 GAATATGTAAAACAGCACTGCATGTCTTTGGCAAGCCACAA GAATATGTAAAACAGCACTGCATGCCTTTGGCAAGCCACAA < 41bp 1 0.04928994890591 1 0.132921516895294 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF451 ENSG00000112200 CDS Human protein_coding chr6:57012758 chr6:57012762 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_21341 0 0 1 0 0 chromatin 1 0.500231644135338 1 0.999536711729324 hm5C_site_22366 DeepMRMD:1;iRNA_m5C:0.999536711729324 22367 chr19 45974495 45974495 1 + G A COAD 45974494 + 45974474 45974514 41 AGCGAAGGGTGCGCCGGGAACGAAATAAACTAGCAGCAGCT AGCGAAGGGTGCGCCGGGAACAAAATAAACTAGCAGCAGCT < 41bp 1 0.688624432810725 1 0.506480932235718 experiment 0.622751134378549 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45974494 chr19:45974495 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_21342 0 0 0 0 2 Cytosol 1 0.500231643920308 0.987038135528564 0.999536712159383 hm5C_site_22367 DeepMRMD:0.987038135528564;iRNA_m5C:0.999536712159383 22368 chr11 82878524 82878524 1 + G A COAD 82878517 + 82878497 82878537 41 ACTTCCTTGTTGTTGTGCATCAAATTCGACAGCTATTTCAG ACTTCCTTGTTGTTGTGCATCAAATTCAACAGCTATTTCAG < 41bp 1 0.299872053813285 1 0.447575628757477 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCF11 ENSG00000165494 CDS Human protein_coding chr11:82878517 chr11:82878524 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_21343 0 0 1 0 2 Nucleus 1 0.500231648523635 1 0.99953670295273 hm5C_site_22368 DeepMRMD:1;iRNA_m5C:0.99953670295273 22369 chr21 30701851 30701851 1 + G A COAD 30701844 + 30701824 30701864 41 ATGCACAACGGATAATTTCACTGTCTCGAAATGATTTTCAG ATGCACAACGGATAATTTCACTGTCTCAAAATGATTTTCAG < 41bp 1 0.162673858083715 1 0.218050301074982 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BACH1 ENSG00000156273 CDS Human protein_coding chr21:30701844 chr21:30701851 nonsynonymous SNV 0.999 5 28 hm5C_associated_SNPs_21344 0 0 1 0 1 Cytosol 1 0.500231641706247 1 0.999536716587506 hm5C_site_22369 DeepMRMD:1;iRNA_m5C:0.999536716587506 22370 chr15 99673043 99673043 1 + C T COAD 99673023 + 99673003 99673043 41 GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGC GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGT < 41bp 1 0.213752628669609 1 0.086933970451355 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99673023 chr15:99673043 nonsynonymous SNV 0.000 0 41 hm5C_associated_SNPs_21345 0 0 1 0 1 exosome 1 0.500132175795714 1 0.999735648408572 hm5C_site_22370 DeepMRMD:1;iRNA_m5C:0.999735648408572 22371 chr1 93307405 93307405 1 + C T COAD 93307419 + 93307399 93307439 41 CAGGAGCGGGCTGCTGAGAGCTAAACCCAGCAATTTTCTAT CAGGAGTGGGCTGCTGAGAGCTAAACCCAGCAATTTTCTAT < 41bp 1 0.445526945638644 1 0.169617056846619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL5 ENSG00000122406 CDS Human protein_coding chr1:93307419 chr1:93307405 nonsynonymous SNV 0.998 1 7 hm5C_associated_SNPs_21346 0 0 1 0 1 Cytosol 1 0.500231643962731 1 0.999536712074538 hm5C_site_22371 DeepMRMD:1;iRNA_m5C:0.999536712074538 22372 chr1 6681587 6681587 1 + A T COAD 6681570 + 6681550 6681590 41 CCACACCTGGATTCACCTGTCCTGTGCGAAAATCCGGAAAT CCACACCTGGATTCACCTGTCCTGTGCGAAAATCCGGTAAT < 41bp 1 0.173325898740973 1 0.258412063121796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681570 chr1:6681587 stopgain 1.000 1 38 hm5C_associated_SNPs_21347 0 0 1 0 0 cytosol 1 0.500231627002061 1 0.999536745995878 hm5C_site_22372 DeepMRMD:1;iRNA_m5C:0.999536745995878 22373 chr18 3457641 3457641 1 + C A COAD 3457622 + 3457602 3457642 41 ATCCCCGGGATCAGTTTTGGCTCGTCCATCAGTGATCTGCC ATCCCCGGGATCAGTTTTGGCTCGTCCATCAGTGATCTGAC < 41bp 1 0.649172272614849 1 0.215958327054977 experiment 0.701655454770301 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457622 chr18:3457641 stopgain 0.999 1 40 hm5C_associated_SNPs_21348 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_22373 DeepMRMD:1;iRNA_m5C:0.999536712157815 22374 chr1 16261135 16261135 1 + G A COAD 16261121 + 16261101 16261141 41 CCATGCCTGTGATCGACGATCGTCCGGCAGACGCGGGCTCA CCATGCCTGTGATCGACGATCGTCCGGCAGACGCAGGCTCA < 41bp 1 0.148492204606596 1 0.153221040964127 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16261121 chr1:16261135 synonymous SNV . 0 35 hm5C_associated_SNPs_21351 0 0 1 0 0 Endoplasmic reticulum 1 0.500231645000042 1 0.999536709999916 hm5C_site_22374 DeepMRMD:1;iRNA_m5C:0.999536709999916 22375 chr7 23207602 23207602 1 + A G COAD 23207600 + 23207580 23207620 41 TGTGGTGGAAGTTTAGGAAACAATGTTTCTGGGAGAGTGCT TGTGGTGGAAGTTTAGGAAACAGTGTTTCTGGGAGAGTGCT < 41bp 1 0.46185139328493 1 0.141606569290161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23207600 chr7:23207602 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_21352 0 0 1 0 1 cytosol 1 0.500231643920736 1 0.999536712158528 hm5C_site_22375 DeepMRMD:1;iRNA_m5C:0.999536712158528 22376 chr10 71243599 71243599 1 + G A COAD 71243594 + 71243574 71243614 41 TGGTCTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAAC TGGTCTCCTTCATTGGTGTGCTGGCATCCCTCCGTGACAAC < 41bp 1 0.417669902431523 1 0.121469736099243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243594 chr10:71243599 synonymous SNV . 0 26 hm5C_associated_SNPs_21353 0 0 1 0 1 Cytosol 1 0.500231643929618 1 0.999536712140764 hm5C_site_22376 DeepMRMD:1;iRNA_m5C:0.999536712140764 22377 chr10 71243599 71243599 1 + G A COAD 71243598 + 71243578 71243618 41 CTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAACCTGT CTCCTTCATTGGTGTGCTGGCATCCCTCCGTGACAACCTGT < 41bp 1 0.0913654558452393 1 0.0988269150257111 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243598 chr10:71243599 synonymous SNV . 0 22 hm5C_associated_SNPs_21354 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22377 DeepMRMD:1;iRNA_m5C:0.999536712157815 22378 chr10 71243599 71243599 1 + G A COAD 71243601 + 71243581 71243621 41 CTTCATTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACC CTTCATTGGTGTGCTGGCATCCCTCCGTGACAACCTGTACC < 41bp 1 0.0765823898413094 1 0.362498641014099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243601 chr10:71243599 synonymous SNV . 0 19 hm5C_associated_SNPs_21355 0 0 1 0 1 Cytosol 1 0.500231587814819 1 0.999536824370362 hm5C_site_22378 DeepMRMD:1;iRNA_m5C:0.999536824370362 22379 chr10 71243599 71243599 1 + G A COAD 71243606 + 71243586 71243626 41 TTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACCTTCTC TTGGTGTGCTGGCATCCCTCCGTGACAACCTGTACCTTCTC < 41bp 1 0.56807178705772 1 0.400925487279892 experiment 0.86385642588456 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243606 chr10:71243599 synonymous SNV . 0 14 hm5C_associated_SNPs_21356 0 0 1 0 1 Cytosol 1 0.500231643921131 1 0.999536712157737 hm5C_site_22379 DeepMRMD:1;iRNA_m5C:0.999536712157737 22380 chr17 66033478 66033478 1 + T C COAD 66033483 + 66033463 66033503 41 CTTTTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAAT CTTTTCTCAAGGAAACGAGGCGTCGCAGAATAGAGGTCAAT < 41bp 1 0.134770477527321 1 0.0992160737514496 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033483 chr17:66033478 nonsynonymous SNV 0.158 1 16 hm5C_associated_SNPs_21357 0 0 1 0 1 Cytosol 1 0.500231643721192 1 0.999536712557617 hm5C_site_22380 DeepMRMD:1;iRNA_m5C:0.999536712557617 22381 chr17 66033478 66033478 1 + T C COAD 66033486 + 66033466 66033506 41 TTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAATGTG TTCTCAAGGAAACGAGGCGTCGCAGAATAGAGGTCAATGTG < 41bp 1 0.684365395600188 1 0.170803755521774 experiment 0.631269208799624 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033486 chr17:66033478 nonsynonymous SNV 0.158 1 13 hm5C_associated_SNPs_21358 0 0 1 0 1 Cytosol 1 0.500231643904076 1 0.999536712191849 hm5C_site_22381 DeepMRMD:1;iRNA_m5C:0.999536712191849 22382 chr16 2569698 2569698 1 + G A COAD 2569701 + 2569681 2569721 41 CTCATCTTCGCCGAGGTGCTCGGCCTCTACGGTCTCATCGT CTCATCTTCGCCGAGGTACTCGGCCTCTACGGTCTCATCGT < 41bp 1 0.60582834722021 1 0.749645292758942 experiment 0.788343305559579 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569701 chr16:2569698 synonymous SNV . 0 18 hm5C_associated_SNPs_21360 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920911 0.500709414482116 0.999536712158178 hm5C_site_22382 DeepMRMD:0.500709414482116;iRNA_m5C:0.999536712158178 22383 chr22 24468432 24468432 1 + G A COAD 24468439 + 24468419 24468459 41 CTCTGTGCCACCAGCAGCAGCTCCAAAACCCAGCGGAGGAA CTCTGTGCCACCAACAGCAGCTCCAAAACCCAGCGGAGGAA < 41bp 1 0.351034660799569 1 0.77521687746048 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24468439 chr22:24468432 synonymous SNV . 0 14 hm5C_associated_SNPs_21362 0 0 1 0 1 Cytosol 1 0.500231654122675 0.44956624507904 0.999536691754651 hm5C_site_22383 DeepMRMD:0.44956624507904;iRNA_m5C:0.999536691754651 22384 chr16 700039 700039 1 + G A COAD 700031 + 700011 700051 41 CGTGTATCGCATTCGGGGCTCAGTCTCTGCCGCCAACTACA CGTGTATCGCATTCGGGGCTCAGTCTCTACCGCCAACTACA < 41bp 1 0.0979442396742572 1 0.0280691683292389 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:700031 chr16:700039 nonsynonymous SNV 0.004 3 29 hm5C_associated_SNPs_21363 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_22384 DeepMRMD:1;iRNA_m5C:0.999536712157816 22385 chr15 45353307 45353307 1 + A G COAD 45353327 + 45353307 45353347 41 ATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCC GTGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCC < 41bp 1 0.236225221426707 1 0.355215072631836 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SORD ENSG00000140263 CDS Human protein_coding chr15:45353327 chr15:45353307 nonsynonymous SNV 0.415 1 1 hm5C_associated_SNPs_21364 0 0 1 0 1 Ribosome 1 0.500231633883631 1 0.999536732232738 hm5C_site_22385 DeepMRMD:1;iRNA_m5C:0.999536732232738 22386 chr6 7880269 7880269 1 + G A COAD 7880280 + 7880260 7880300 41 TACTGTGATGGAGAATGCTCCTTCCCACTCAACGCACACAT TACTGTGATAGAGAATGCTCCTTCCCACTCAACGCACACAT < 41bp 1 0.089883274785155 1 0.0498296022415161 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BMP6 ENSG00000153162 CDS Human protein_coding chr6:7880280 chr6:7880269 nonsynonymous SNV 0.998 5 10 hm5C_associated_SNPs_21365 0 0 1 0 2 Ribosome 1 0.500231643924597 1 0.999536712150805 hm5C_site_22386 DeepMRMD:1;iRNA_m5C:0.999536712150805 22387 chr22 51133222 51133222 1 + C A COAD 51133206 + 51133186 51133226 41 ATGCCCCCTTACCCCAGTACCATTCAGGGAAACCCCCAGCT ATGCCCCCTTACCCCAGTACCATTCAGGGAAACCCCAAGCT < 41bp 1 0.0234805462897815 1 0.0365417003631592 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51133206 chr22:51133222 synonymous SNV . 0 37 hm5C_associated_SNPs_21366 0 0 0 0 1 cytosol 1 0.500231643921089 1 0.999536712157822 hm5C_site_22387 DeepMRMD:1;iRNA_m5C:0.999536712157822 22388 chr12 79689918 79689918 1 + G A COAD 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CGCCTTGGACATGGGGGGCACATCTGATCCTTACATGAAAG < 41bp 1 0.166462930461549 1 0.204011410474777 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689918 nonsynonymous SNV 0.994 4 35 hm5C_associated_SNPs_21367 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22388 DeepMRMD:1;iRNA_m5C:0.999536712157815 22389 chr16 58073982 58073982 1 + C A COAD 58073989 + 58073969 58074009 41 CCGTTTGATGGCACCGGTGGCTTTCTGGCCCACGCCTATTT CCGTTTGATGGCAACGGTGGCTTTCTGGCCCACGCCTATTT < 41bp 1 0.0597742097035411 1 0.0541457533836365 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMP15 ENSG00000102996 CDS Human protein_coding chr16:58073989 chr16:58073982 nonsynonymous SNV 0.826 1 14 hm5C_associated_SNPs_21368 0 0 0 0 0 Ribosome 1 0.500230862442242 1 0.999538275115516 hm5C_site_22389 DeepMRMD:1;iRNA_m5C:0.999538275115516 22390 chr19 12014761 12014761 1 + A C COAD 12014742 + 12014722 12014762 41 AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAAAA AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAACA < 41bp 1 0.0897841015084729 1 0.172506839036942 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014742 chr19:12014761 nonsynonymous SNV 0.002 0 40 hm5C_associated_SNPs_21369 0 0 0 0 2 Nucleus 1 0.500231641793897 1 0.999536716412205 hm5C_site_22390 DeepMRMD:1;iRNA_m5C:0.999536716412205 22391 chr1 164790828 164790828 1 + G A COAD 164790815 + 164790795 164790835 41 ATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG ATCAGCCAGACAGGAGGATACAGTGATGGACTCACAGCCAG < 41bp 1 0.670259164635937 1 0.204720765352249 experiment 0.659481670728125 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790815 chr1:164790828 nonsynonymous SNV 1.000 0 34 hm5C_associated_SNPs_21370 0 0 1 0 1 Ribosome 1 0.500231573657167 1 0.999536852685666 hm5C_site_22391 DeepMRMD:1;iRNA_m5C:0.999536852685666 22392 chr4 128748511 128748511 1 + A C COAD 128748508 + 128748488 128748528 41 ACATGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG ACATGGAGCATGAAGAGAGACCACAAGCCTTAAATGACTTG < 41bp 1 0.379256072446809 1 0.136954247951508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128748508 chr4:128748511 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_21371 0 0 1 0 2 Cytosol 1 0.500231643921404 1 0.999536712157191 hm5C_site_22392 DeepMRMD:1;iRNA_m5C:0.999536712157191 22393 chr11 70260753 70260753 1 + G T COAD 70260737 + 70260717 70260757 41 TTCGGAGGCAAGTTTGGTGTCCAGATGGACAGAGTTGATCA TTCGGAGGCAAGTTTGGTGTCCAGATGGACAGAGTTTATCA < 41bp 1 0.693447750202371 1 0.306219875812531 experiment 0.613104499595259 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70260737 chr11:70260753 nonsynonymous SNV 0.996 4 37 hm5C_associated_SNPs_21372 0 0 1 0 1 Ribosome 1 0.500231621606951 1 0.999536756786098 hm5C_site_22393 DeepMRMD:1;iRNA_m5C:0.999536756786098 22394 chr13 77570183 77570183 1 + C T COAD 77570189 + 77570169 77570209 41 TGGTGTAATCAAGGCGCTGCCTGCTTTTTTGAGGGAATTGA TGGTGTAATCAAGGTGCTGCCTGCTTTTTTGAGGGAATTGA < 41bp 1 0.651604195493075 1 0.152753949165344 experiment 0.696791609013849 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570189 chr13:77570183 synonymous SNV . 0 15 hm5C_associated_SNPs_21373 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643906847 1 0.999536712186306 hm5C_site_22394 DeepMRMD:1;iRNA_m5C:0.999536712186306 22395 chr16 77232125 77232125 1 + C T COAD 77232113 + 77232093 77232133 41 GGGTGAAGAAAGAGGAGGACCGGCTCTTCATTCGTTACCCA GGGTGAAGAAAGAGGAGGACCGGCTCTTCATTTGTTACCCA < 41bp 1 0.540688638284933 1 0.167564749717712 experiment 0.918622723430133 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MON1B ENSG00000103111 CDS Human protein_coding chr16:77232113 chr16:77232125 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_21374 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22395 DeepMRMD:1;iRNA_m5C:0.999536712157815 22396 chr2 159477782 159477782 1 + C T COAD 159477801 + 159477781 159477821 41 TCTTATTCCGACAGTGGATACCAGGAAGCAGGGAGTTTCCA TTTTATTCCGACAGTGGATACCAGGAAGCAGGGAGTTTCCA < 41bp 1 0.233070440879627 1 0.0879938006401062 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKP4 ENSG00000144283 CDS Human protein_coding chr2:159477801 chr2:159477782 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_21375 0 0 1 0 1 Cytosol 1 0.500231634616258 1 0.999536730767484 hm5C_site_22396 DeepMRMD:1;iRNA_m5C:0.999536730767484 22397 chr22 29439408 29439408 1 + G A COAD 29439389 + 29439369 29439409 41 TCAACAAGCAGAAAGTGGCTCGAGCAAGGATCCAGCACCGC TCAACAAGCAGAAAGTGGCTCGAGCAAGGATCCAGCACCAC < 41bp 1 0.334407915862384 1 0.387622058391571 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29439389 chr22:29439408 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_21376 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22397 DeepMRMD:1;iRNA_m5C:0.999536712157815 22398 chr1 117641458 117641458 1 + T G COAD 117641459 + 117641439 117641479 41 AGCTGTCTTCTAACAGGAATCCATCACTTGAAGATCAAGCT AGCTGTCTTCTAACAGGAAGCCATCACTTGAAGATCAAGCT < 41bp 1 0.0186149500051744 1 0.289916455745697 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117641459 chr1:117641458 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_21377 0 0 1 0 2 Nucleus 1 0.500231644322457 1 0.999536711355085 hm5C_site_22398 DeepMRMD:1;iRNA_m5C:0.999536711355085 22399 chr3 155628663 155628663 1 + T C COAD 155628644 + 155628624 155628664 41 CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGTC CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGCC < 41bp 1 0.503719480381879 1 0.409269988536835 experiment 0.992561039236243 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628644 chr3:155628663 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_21378 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22399 DeepMRMD:1;iRNA_m5C:0.999536712157815 22400 chr6 42986629 42986629 1 + G A COAD 42986648 + 42986628 42986668 41 CGAAGGGGAAGGGGCCATGTCCCCGCCGGCGCCAGTGCTGC CAAAGGGGAAGGGGCCATGTCCCCGCCGGCGCCAGTGCTGC < 41bp 1 0.457488561118072 1 0.621697247028351 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42986648 chr6:42986629 synonymous SNV . 0 2 hm5C_associated_SNPs_21379 0 0 1 0 1 Ribosome 1 0.500231643921489 0.756605505943298 0.999536712157022 hm5C_site_22400 DeepMRMD:0.756605505943298;iRNA_m5C:0.999536712157022 22401 chr1 33138398 33138398 1 + C A COAD 33138407 + 33138387 33138427 41 TTCAGTTTATTCATGGTGGTCATACTGCCAAGATATCTGAT TTCAGTTTATTAATGGTGGTCATACTGCCAAGATATCTGAT < 41bp 1 0.0516718574101557 1 0.14948832988739 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33138407 chr1:33138398 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_21380 0 0 1 0 1 Ribosome 1 0.500231643910167 1 0.999536712179667 hm5C_site_22401 DeepMRMD:1;iRNA_m5C:0.999536712179667 22402 chr14 38679134 38679134 1 + C T COAD 38679144 + 38679124 38679164 41 TAAACCTGGGCGTGTGGGTGCTATCGCTGCTCGTCATCCTG TAAACCTGGGTGTGTGGGTGCTATCGCTGCTCGTCATCCTG < 41bp 1 0.163089580386512 1 0.0492421686649323 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSTR1 ENSG00000139874 CDS Human protein_coding chr14:38679144 chr14:38679134 synonymous SNV . 0 11 hm5C_associated_SNPs_21381 0 0 0 0 0 nucleus 1 0.500231643913217 1 0.999536712173566 hm5C_site_22402 DeepMRMD:1;iRNA_m5C:0.999536712173566 22403 chr9 88571307 88571307 1 + C T COAD 88571292 + 88571272 88571312 41 TAGAATTAAAGTTGGGAGAACTACTTCATGATAAGCTGTAA TAGAATTAAAGTTGGGAGAACTACTTCATGATAAGTTGTAA < 41bp 1 0.0712114269660352 1 0.304441571235657 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAA35 ENSG00000135040 CDS Human protein_coding chr9:88571292 chr9:88571307 synonymous SNV . 0 36 hm5C_associated_SNPs_21383 0 0 1 0 2 Cytosol 1 0.500231644468409 1 0.999536711063182 hm5C_site_22403 DeepMRMD:1;iRNA_m5C:0.999536711063182 22404 chr12 57167928 57167928 1 + A G COAD 57167934 + 57167914 57167954 41 CTACTCAGTGGGTGAAGGAGCATGTGGGGGACAGAGGTATG CTACTCAGTGGGTGGAGGAGCATGTGGGGGACAGAGGTATG < 41bp 1 0.501064625438892 1 0.358309298753738 experiment 0.997870749122216 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57167934 chr12:57167928 nonsynonymous SNV 0.989 1 15 hm5C_associated_SNPs_21385 0 0 1 0 1 Endoplasmic reticulum 1 0.500231622852177 1 0.999536754295645 hm5C_site_22404 DeepMRMD:1;iRNA_m5C:0.999536754295645 22405 chr10 128817067 128817067 1 + G A COAD 128817082 + 128817062 128817102 41 GGCTCGAAAAACAGGGTTTCCGGAGATAATCATGCCTGGTA GGCTCAAAAAACAGGGTTTCCGGAGATAATCATGCCTGGTA < 41bp 1 0.493770442002837 1 0.88224995136261 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128817082 chr10:128817067 nonsynonymous SNV 0.697 4 6 hm5C_associated_SNPs_21386 0 0 1 0 2 Nucleus 1 0.500231643921094 0.23550009727478 0.999536712157813 hm5C_site_22405 DeepMRMD:0.23550009727478;iRNA_m5C:0.999536712157813 22406 chr7 4796811 4796811 1 + T C COAD 4796801 + 4796781 4796821 41 TCCTGCTTCCGCACCCCCTTCGGGCCTCTGTCCTCAAGGTA TCCTGCTTCCGCACCCCCTTCGGGCCTCTGCCCTCAAGGTA < 41bp 1 0.409005192162172 1 0.830329060554504 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796801 chr7:4796811 nonsynonymous SNV 0.988 5 31 hm5C_associated_SNPs_21387 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.339341878890992 0.999536712157815 hm5C_site_22406 DeepMRMD:0.339341878890992;iRNA_m5C:0.999536712157815 22407 chr11 45882547 45882547 1 + G A COAD 45882565 + 45882545 45882585 41 ACGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT ACAACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT < 41bp 1 0.0256035043286811 1 0.0481784641742706 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882565 chr11:45882547 nonsynonymous SNV 0.087 1 3 hm5C_associated_SNPs_21388 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22407 DeepMRMD:1;iRNA_m5C:0.999536712157815 22408 chr11 45882547 45882547 1 + G A COAD 45882566 + 45882546 45882586 41 CGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG CAACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG < 41bp 1 0.0402020467821302 1 0.0525535345077515 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882566 chr11:45882547 nonsynonymous SNV 0.087 1 2 hm5C_associated_SNPs_21389 0 0 1 0 1 Nucleus 1 0.500231643886537 1 0.999536712226927 hm5C_site_22408 DeepMRMD:1;iRNA_m5C:0.999536712226927 22409 chr6 151670274 151670274 1 + G A COAD 151670287 + 151670267 151670307 41 AAGCCACGCAGAAATTTCTCCCCCAGCCGAATCTGGCCAAG AAGCCACACAGAAATTTCTCCCCCAGCCGAATCTGGCCAAG < 41bp 1 0.285570828933092 1 0.136394649744034 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151670287 chr6:151670274 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_21390 0 0 0 0 0 Ribosome 1 0.500231643922847 1 0.999536712154306 hm5C_site_22409 DeepMRMD:1;iRNA_m5C:0.999536712154306 22410 chr7 34125547 34125547 1 + T C COAD 34125549 + 34125529 34125569 41 GAATCTTGGAGGGTGGAGTCCAATGAGTTCTGCAACAGACC GAATCTTGGAGGGTGGAGCCCAATGAGTTCTGCAACAGACC < 41bp 1 0.142989203232878 1 0.190489858388901 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMPER ENSG00000164619 CDS Human protein_coding chr7:34125549 chr7:34125547 nonsynonymous SNV 0.998 1 19 hm5C_associated_SNPs_21391 0 0 0 0 0 exosome 1 0.500231643920467 1 0.999536712159066 hm5C_site_22410 DeepMRMD:1;iRNA_m5C:0.999536712159066 22411 chrX 107097885 107097885 1 + A G COAD 107097904 + 107097884 107097924 41 GAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA GGACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA < 41bp 1 0.132444020523793 1 0.14060765504837 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MID2 ENSG00000080561 CDS Human protein_coding chrX:107097904 chrX:107097885 nonsynonymous SNV 0.997 3 2 hm5C_associated_SNPs_21392 0 0 0 0 2 nucleus 1 0.50023163209798 1 0.999536735804039 hm5C_site_22411 DeepMRMD:1;iRNA_m5C:0.999536735804039 22412 chr17 7339937 7339937 1 + T G COAD 7339946 + 7339926 7339966 41 CCTAGTGACGTTTCAGCGTCCGAGTCGCCTCAGCATGACGT CCTAGTGACGTGTCAGCGTCCGAGTCGCCTCAGCATGACGT < 41bp 1 0.452099824675674 1 0.512748301029205 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM102 ENSG00000181284 CDS Human protein_coding chr17:7339946 chr17:7339937 synonymous SNV . 0 12 hm5C_associated_SNPs_21393 0 0 0 0 0 exosome 1 0.500231648001132 0.97450339794159 0.999536703997735 hm5C_site_22412 DeepMRMD:0.97450339794159;iRNA_m5C:0.999536703997735 22413 chr10 73567731 73567731 1 + G T COAD 73567716 + 73567696 73567736 41 TTCTGGCCATCCACTACTTCCGGGCCCTTGCCAACGACTCT TTCTGGCCATCCACTACTTCCGGGCCCTTGCCAACTACTCT < 41bp 1 0.168950272078085 1 0.731848835945129 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73567716 chr10:73567731 nonsynonymous SNV 0.996 3 36 hm5C_associated_SNPs_21394 0 0 0 0 1 exosome 1 0.500231643921099 0.536302328109742 0.999536712157801 hm5C_site_22413 DeepMRMD:0.536302328109742;iRNA_m5C:0.999536712157801 22414 chr1 153701125 153701125 1 + G T COAD 153701109 + 153701089 153701129 41 TTCCCGGCTCCTGGCTGCAGCCATGGAGTTGCAGAAGGGAA TTCCCGGCTCCTGGCTGCAGCCATGGAGTTGCAGAATGGAA < 41bp 1 0.110745655980692 1 0.273824036121368 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153701109 chr1:153701125 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_21395 0 0 0 0 1 chromatin 1 0.500231643921007 1 0.999536712157986 hm5C_site_22414 DeepMRMD:1;iRNA_m5C:0.999536712157986 22415 chr16 70509330 70509330 1 + C A COAD 70509347 + 70509327 70509367 41 CTGCTCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG CTGATCCGCACCTTCGGGGGCGGCTTTGAGCTGCACACCTG < 41bp 1 0.409813762528256 1 0.392835170030594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FUK ENSG00000157353 CDS Human protein_coding chr16:70509347 chr16:70509330 nonsynonymous SNV 0.168 1 4 hm5C_associated_SNPs_21396 0 0 1 0 2 chromatin 1 0.500231643263625 1 0.999536713472751 hm5C_site_22415 DeepMRMD:1;iRNA_m5C:0.999536713472751 22416 chr10 124813266 124813266 1 + C T COAD 124813278 + 124813258 124813298 41 AAGCATATCGATGCAGAATACTGACGTCTATAGGAGTGGGA AAGCATATTGATGCAGAATACTGACGTCTATAGGAGTGGGA < 41bp 1 0.377766868261077 1 0.158118188381195 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACADSB ENSG00000196177 CDS Human protein_coding chr10:124813278 chr10:124813266 synonymous SNV . 0 9 hm5C_associated_SNPs_21397 0 0 1 0 1 Cytosol 1 0.500231643983342 1 0.999536712033316 hm5C_site_22416 DeepMRMD:1;iRNA_m5C:0.999536712033316 22417 chr11 74329760 74329760 1 + G T COAD 74329746 + 74329726 74329766 41 ACCTGCATCCAAGCAGGTTTCCCAGCAGCCCAAAGGAATTA ACCTGCATCCAAGCAGGTTTCCCAGCAGCCCAAATGAATTA < 41bp 1 0.498722671193798 1 0.248010694980621 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329746 chr11:74329760 stopgain 1.000 1 35 hm5C_associated_SNPs_21398 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22417 DeepMRMD:1;iRNA_m5C:0.999536712157815 22418 chr11 74329760 74329760 1 + G T COAD 74329747 + 74329727 74329767 41 CCTGCATCCAAGCAGGTTTCCCAGCAGCCCAAAGGAATTAT CCTGCATCCAAGCAGGTTTCCCAGCAGCCCAAATGAATTAT < 41bp 1 0.247732443200171 1 0.152605295181274 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329747 chr11:74329760 stopgain 1.000 1 34 hm5C_associated_SNPs_21399 0 0 1 0 1 Nucleus 1 0.500231643921095 1 0.99953671215781 hm5C_site_22418 DeepMRMD:1;iRNA_m5C:0.99953671215781 22419 chr11 74329760 74329760 1 + G T COAD 74329751 + 74329731 74329771 41 CATCCAAGCAGGTTTCCCAGCAGCCCAAAGGAATTATGGGA CATCCAAGCAGGTTTCCCAGCAGCCCAAATGAATTATGGGA < 41bp 1 0.29664619415106 1 0.561517417430878 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329751 chr11:74329760 stopgain 1.000 1 30 hm5C_associated_SNPs_21400 0 0 1 0 1 Nucleus 1 0.500231643921092 0.876965165138244 0.999536712157815 hm5C_site_22419 DeepMRMD:0.876965165138244;iRNA_m5C:0.999536712157815 22420 chr11 74329760 74329760 1 + G T COAD 74329754 + 74329734 74329774 41 CCAAGCAGGTTTCCCAGCAGCCCAAAGGAATTATGGGAATG CCAAGCAGGTTTCCCAGCAGCCCAAATGAATTATGGGAATG < 41bp 1 0.506821091204581 1 0.151649385690689 experiment 0.986357817590839 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329754 chr11:74329760 stopgain 1.000 1 27 hm5C_associated_SNPs_21401 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22420 DeepMRMD:1;iRNA_m5C:0.999536712157815 22421 chr2 175268834 175268834 1 + G A COAD 175268839 + 175268819 175268859 41 CTTTGAAAATAGAGGGAGTTCGTAATATTTCTAATCAACTT CTTTGAAAATAGAGGAAGTTCGTAATATTTCTAATCAACTT < 41bp 1 0.624402710298028 1 0.364207923412323 experiment 0.751194579403944 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175268839 chr2:175268834 nonsynonymous SNV 0.992 4 16 hm5C_associated_SNPs_21402 0 0 0 0 1 exosome 1 0.500231643358528 1 0.999536713282944 hm5C_site_22421 DeepMRMD:1;iRNA_m5C:0.999536713282944 22422 chr15 31197927 31197927 1 + G A COAD 31197933 + 31197913 31197953 41 TGATATCCCTCACAGCATTCCTTTGGAGCAGGGGTCAAGCT TGATATCCCTCACAACATTCCTTTGGAGCAGGGGTCAAGCT < 41bp 1 0.293045491755173 1 0.0918174386024475 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAN1 ENSG00000198690 CDS Human protein_coding chr15:31197933 chr15:31197927 nonsynonymous SNV 0.008 0 15 hm5C_associated_SNPs_21403 0 0 1 0 0 Cytosol 1 0.500231645170415 1 0.999536709659171 hm5C_site_22422 DeepMRMD:1;iRNA_m5C:0.999536709659171 22423 chr2 48027747 48027747 1 + G T COAD 48027758 + 48027738 48027778 41 AGGGATCATGGAAGAAGTTGCTGATGGTTTTAAGTCTAAAA AGGGATCATTGAAGAAGTTGCTGATGGTTTTAAGTCTAAAA < 41bp 1 0.238620084497011 1 0.043866366147995 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSH6 ENSG00000116062 CDS Human protein_coding chr2:48027758 chr2:48027747 nonsynonymous SNV 0.731 2 10 hm5C_associated_SNPs_21404 0 0 1 0 0 Nucleus 1 0.500237852874155 1 0.999524294251691 hm5C_site_22423 DeepMRMD:1;iRNA_m5C:0.999524294251691 22424 chr4 141300287 141300287 1 + G T COAD 141300277 + 141300257 141300297 41 GAATTTTTCTTATTGTAGACCATTCCTCAAGAATTTTGTAT GAATTTTTCTTATTGTAGACCATTCCTCAATAATTTTGTAT < 41bp 1 0.0210917555982419 1 0.0381871461868286 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCOC ENSG00000153130 CDS Human protein_coding chr4:141300277 chr4:141300287 nonsynonymous SNV 0.018 2 31 hm5C_associated_SNPs_21405 0 0 1 0 2 Ribosome 1 0.500231643329264 1 0.999536713341473 hm5C_site_22424 DeepMRMD:1;iRNA_m5C:0.999536713341473 22425 chr9 5747485 5747485 1 + C T COAD 5747494 + 5747474 5747514 41 TACTTGGACATCGGCATTGGCATGTTGTACAGGTAAATCTT TACTTGGACATTGGCATTGGCATGTTGTACAGGTAAATCTT < 41bp 1 0.203750178307961 1 0.210411131381989 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RIC1 ENSG00000107036 CDS Human protein_coding chr9:5747494 chr9:5747485 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_21406 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22425 DeepMRMD:1;iRNA_m5C:0.999536712157815 22426 chr3 63965705 63965705 1 + G A COAD 63965690 + 63965670 63965710 41 CAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTCTT CAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCATTCTT < 41bp 1 0.348593262676667 1 0.591541707515717 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63965690 chr3:63965705 nonsynonymous SNV 0.993 2 36 hm5C_associated_SNPs_21407 0 0 1 0 0 Cytosol 1 0.500231643921092 0.816916584968566 0.999536712157815 hm5C_site_22426 DeepMRMD:0.816916584968566;iRNA_m5C:0.999536712157815 22427 chr4 144336797 144336797 1 + A C COAD 144336803 + 144336783 144336823 41 AAAAAAGAGTTTGAAAACAGCTACATTTTTGATATCAACAC AAAAAAGAGTTTGACAACAGCTACATTTTTGATATCAACAC < 41bp 1 0.596118141700797 1 0.27788770198822 experiment 0.807763716598406 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144336803 chr4:144336797 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_21408 0 0 1 0 0 chromatin 1 0.500231742290152 1 0.999536515419695 hm5C_site_22427 DeepMRMD:1;iRNA_m5C:0.999536515419695 22428 chr5 7889295 7889295 1 + G A COAD 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGGCAGCCAATTATAGCCGCTTTGTAC < 41bp 1 0.124612857362421 1 0.0679202377796173 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889295 nonsynonymous SNV 0.013 4 23 hm5C_associated_SNPs_21409 0 0 0 0 2 Nucleus 1 0.500231643921073 1 0.999536712157854 hm5C_site_22428 DeepMRMD:1;iRNA_m5C:0.999536712157854 22429 chr19 42406145 42406145 1 + A G COAD 42406149 + 42406129 42406169 41 TTGGAGGAGCTGCAGAACATCTTCCCCAGCCTGGACGAGCT TTGGAGGAGCTGCAGAGCATCTTCCCCAGCCTGGACGAGCT < 41bp 1 0.107134821286807 1 0.194925397634506 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42406149 chr19:42406145 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_21410 0 0 1 0 1 Cytosol 1 0.500231643920961 1 0.999536712158078 hm5C_site_22429 DeepMRMD:1;iRNA_m5C:0.999536712158078 22430 chr11 93494804 93494804 1 + C A COAD 93494810 + 93494790 93494830 41 TACCTGCAGAGTTTCTCTATCGCATTGATCAACCAAAAGAG TACCTGCAGAGTTTATCTATCGCATTGATCAACCAAAAGAG < 41bp 1 0.533541088150161 1 0.0735818147659302 experiment 0.932917823699677 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93494810 chr11:93494804 nonsynonymous SNV 0.808 1 15 hm5C_associated_SNPs_21411 0 0 0 0 0 Cytosol 1 0.50023164388845 1 0.9995367122231 hm5C_site_22430 DeepMRMD:1;iRNA_m5C:0.9995367122231 22431 chr3 50091793 50091793 1 + G A COAD 50091805 + 50091785 50091825 41 TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG TGGGCACCAATCTTCCTGTTCATTCTGCAAGAACCCAAGAG < 41bp 1 0.0479286480601481 1 0.0196280181407928 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091805 chr3:50091793 nonsynonymous SNV 0.983 0 9 hm5C_associated_SNPs_21412 0 0 1 0 1 Nucleus 1 0.500231643921112 1 0.999536712157775 hm5C_site_22431 DeepMRMD:1;iRNA_m5C:0.999536712157775 22432 chr21 34925265 34925265 1 + A C COAD 34925277 + 34925257 34925297 41 AGTATCAGAGGCTGCTGTGACTGTTCCAGAACCACCACCAG AGTATCAGCGGCTGCTGTGACTGTTCCAGAACCACCACCAG < 41bp 1 0.291514771736773 1 0.69576370716095 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SON ENSG00000159140 CDS Human protein_coding chr21:34925277 chr21:34925265 nonsynonymous SNV 0.989 4 9 hm5C_associated_SNPs_21413 0 0 1 0 0 Nucleus 1 0.500231643921092 0.6084725856781 0.999536712157815 hm5C_site_22432 DeepMRMD:0.6084725856781;iRNA_m5C:0.999536712157815 22433 chr3 141644455 141644455 1 + A C COAD 141644475 + 141644455 141644495 41 AGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT CGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT < 41bp 1 0.687961553581538 1 0.4543417096138 experiment 0.624076892836923 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644475 chr3:141644455 nonsynonymous SNV 0.885 3 1 hm5C_associated_SNPs_21414 0 0 1 6 1 Ribosome 1 0.500231643920124 1 0.999536712159753 hm5C_site_22433 DeepMRMD:1;iRNA_m5C:0.999536712159753 22434 chr6 87967471 87967471 1 + T G COAD 87967481 + 87967461 87967501 41 GATGGGAAATTTATCTGTAGCAGGTGTTACAGGGCTTTTAC GATGGGAAATGTATCTGTAGCAGGTGTTACAGGGCTTTTAC < 41bp 1 0.642876384889837 1 0.80269193649292 experiment 0.714247230220326 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF292 ENSG00000188994 CDS Human protein_coding chr6:87967481 chr6:87967471 nonsynonymous SNV 0.997 4 11 hm5C_associated_SNPs_21415 0 0 1 0 0 Cytosol 1 0.50023164392106 0.39461612701416 0.99953671215788 hm5C_site_22434 DeepMRMD:0.39461612701416;iRNA_m5C:0.99953671215788 22435 chr19 54969677 54969677 1 + C T COAD 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGCGCAAGGTTGCCCTCAAGGCCATGATCAAAAC < 41bp 1 0.18046639622833 1 0.210039585828781 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969677 synonymous SNV . 0 18 hm5C_associated_SNPs_21416 0 0 1 0 1 chromatin 1 0.500235520714303 1 0.999528958571394 hm5C_site_22435 DeepMRMD:1;iRNA_m5C:0.999528958571394 22436 chr11 35640759 35640759 1 + C A COAD 35640777 + 35640757 35640797 41 GGCCCTGTCTTACTATCTGGCGCGCCTGCTGGGCCTCCAGC GGACCTGTCTTACTATCTGGCGCGCCTGCTGGGCCTCCAGC < 41bp 1 0.358301458722012 1 0.12658154964447 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FJX1 ENSG00000179431 CDS Human protein_coding chr11:35640777 chr11:35640759 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_21417 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22436 DeepMRMD:1;iRNA_m5C:0.999536712157815 22437 chr12 62931429 62931429 1 + G A COAD 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGCACATTGCCATGGGGCTGTTCTTGGAACATCATGGC < 41bp 1 0.162876678537092 1 0.0297220945358276 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931429 synonymous SNV . 0 7 hm5C_associated_SNPs_21418 0 0 1 0 2 Nucleus 1 0.500231643633006 1 0.999536712733988 hm5C_site_22437 DeepMRMD:1;iRNA_m5C:0.999536712733988 22438 chr7 142459804 142459804 1 + C A COAD 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTA < 41bp 1 0.620001167613872 1 0.235833466053009 experiment 0.759997664772256 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459804 nonsynonymous SNV 0.004 5 41 hm5C_associated_SNPs_21419 0 0 0 0 1 Cytosol 1 0.500231861162978 1 0.999536277674044 hm5C_site_22438 DeepMRMD:1;iRNA_m5C:0.999536277674044 22439 chr7 142459804 142459804 1 + C A COAD 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTATC < 41bp 1 0.44746153033111 1 0.0501893162727356 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459804 nonsynonymous SNV 0.004 5 39 hm5C_associated_SNPs_21420 0 0 0 0 1 Cytosol 1 0.500231648355446 1 0.999536703289108 hm5C_site_22439 DeepMRMD:1;iRNA_m5C:0.999536703289108 22440 chr7 142459804 142459804 1 + C A COAD 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTATCT < 41bp 1 0.48771664822388 1 0.0813611447811127 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459804 nonsynonymous SNV 0.004 5 38 hm5C_associated_SNPs_21421 0 0 0 0 1 Cytosol 1 0.500270063458723 1 0.999459873082554 hm5C_site_22440 DeepMRMD:1;iRNA_m5C:0.999459873082554 22441 chr7 142459804 142459804 1 + C A COAD 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTATCTGCC < 41bp 1 0.401360063520532 1 0.152843236923218 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459804 nonsynonymous SNV 0.004 5 35 hm5C_associated_SNPs_21423 0 0 0 0 1 Cytosol 1 0.500231643758268 1 0.999536712483463 hm5C_site_22441 DeepMRMD:1;iRNA_m5C:0.999536712483463 22442 chr7 142459804 142459804 1 + C A COAD 142459795 + 142459775 142459815 41 AGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG AGTAATCAACGCCCGCGTGTCCACCATCTATCTGCCCACCG < 41bp 1 0.352415294911434 1 0.110317587852478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459795 chr7:142459804 nonsynonymous SNV 0.004 5 30 hm5C_associated_SNPs_21424 0 0 0 0 1 Cytosol 1 0.500231636380993 1 0.999536727238014 hm5C_site_22442 DeepMRMD:1;iRNA_m5C:0.999536727238014 22443 chr7 142459804 142459804 1 + C A COAD 142459798 + 142459778 142459818 41 AATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCC AATCAACGCCCGCGTGTCCACCATCTATCTGCCCACCGCCC < 41bp 1 0.208145889119693 1 0.0593501031398773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459798 chr7:142459804 nonsynonymous SNV 0.004 5 27 hm5C_associated_SNPs_21425 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_22443 DeepMRMD:1;iRNA_m5C:0.999536712157816 22444 chr7 142459804 142459804 1 + C A COAD 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACGCCCGCGTGTCCACCATCTATCTGCCCACCGCCCC < 41bp 1 0.470076145173761 1 0.242048978805542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459804 nonsynonymous SNV 0.004 5 26 hm5C_associated_SNPs_21426 0 0 0 0 1 Cytosol 1 0.500231644337175 1 0.99953671132565 hm5C_site_22444 DeepMRMD:1;iRNA_m5C:0.99953671132565 22445 chr7 142459804 142459804 1 + C A COAD 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCCCGCGTGTCCACCATCTATCTGCCCACCGCCCCTCC < 41bp 1 0.399964453378537 1 0.265989124774933 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459804 nonsynonymous SNV 0.004 5 23 hm5C_associated_SNPs_21427 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_22445 DeepMRMD:1;iRNA_m5C:0.999536712157815 22446 chr7 142459804 142459804 1 + C A COAD 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CCCGCGTGTCCACCATCTATCTGCCCACCGCCCCTCCAGCC < 41bp 1 0.632582246958623 1 0.454701989889145 experiment 0.734835506082754 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459804 nonsynonymous SNV 0.004 5 19 hm5C_associated_SNPs_21428 0 0 0 0 1 Cytosol 1 0.50023164392107 1 0.999536712157859 hm5C_site_22446 DeepMRMD:1;iRNA_m5C:0.999536712157859 22447 chr7 142459804 142459804 1 + C A COAD 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCGTGTCCACCATCTATCTGCCCACCGCCCCTCCAGCCACT < 41bp 1 0.175681580755575 1 0.0344131290912628 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459804 nonsynonymous SNV 0.004 5 16 hm5C_associated_SNPs_21429 0 0 0 0 1 Cytosol 1 0.500231643920967 1 0.999536712158066 hm5C_site_22447 DeepMRMD:1;iRNA_m5C:0.999536712158066 22448 chr7 142459804 142459804 1 + C A COAD 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CGTGTCCACCATCTATCTGCCCACCGCCCCTCCAGCCACTG < 41bp 1 0.217305836137938 1 0.0542556643486023 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459804 nonsynonymous SNV 0.004 5 15 hm5C_associated_SNPs_21430 0 0 0 0 1 Cytosol 1 0.500222682349217 1 0.999554635301565 hm5C_site_22448 DeepMRMD:1;iRNA_m5C:0.999554635301565 22449 chr7 142459804 142459804 1 + C A COAD 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG GTGTCCACCATCTATCTGCCCACCGCCCCTCCAGCCACTGG < 41bp 1 0.672236115930153 1 0.0410313010215759 experiment 0.655527768139695 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459804 nonsynonymous SNV 0.004 5 14 hm5C_associated_SNPs_21431 0 0 0 0 1 Cytosol 1 0.500231643921044 1 0.999536712157912 hm5C_site_22449 DeepMRMD:1;iRNA_m5C:0.999536712157912 22450 chr7 142459804 142459804 1 + C A COAD 142459813 + 142459793 142459833 41 GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA GTCCACCATCTATCTGCCCACCGCCCCTCCAGCCACTGGCA < 41bp 1 0.272822122220701 1 0.113057315349579 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459813 chr7:142459804 nonsynonymous SNV 0.004 5 12 hm5C_associated_SNPs_21432 0 0 0 0 1 Cytosol 1 0.500231643918999 1 0.999536712162002 hm5C_site_22450 DeepMRMD:1;iRNA_m5C:0.999536712162002 22451 chr7 142459804 142459804 1 + C A COAD 142459814 + 142459794 142459834 41 TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC TCCACCATCTATCTGCCCACCGCCCCTCCAGCCACTGGCAC < 41bp 1 0.509472024669368 1 0.0934563279151917 experiment 0.981055950661263 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459814 chr7:142459804 nonsynonymous SNV 0.004 5 11 hm5C_associated_SNPs_21433 0 0 0 0 1 Cytosol 1 0.500231643919791 1 0.999536712160419 hm5C_site_22451 DeepMRMD:1;iRNA_m5C:0.999536712160419 22452 chr7 142459804 142459804 1 + C A COAD 142459816 + 142459796 142459836 41 CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA CACCATCTATCTGCCCACCGCCCCTCCAGCCACTGGCACGA < 41bp 1 0.256541132609554 1 0.200944125652313 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459816 chr7:142459804 nonsynonymous SNV 0.004 5 9 hm5C_associated_SNPs_21434 0 0 0 0 1 Cytosol 1 0.500231643920594 1 0.999536712158812 hm5C_site_22452 DeepMRMD:1;iRNA_m5C:0.999536712158812 22453 chr7 142459804 142459804 1 + C A COAD 142459817 + 142459797 142459837 41 ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA ACCATCTATCTGCCCACCGCCCCTCCAGCCACTGGCACGAA < 41bp 1 0.133849131824835 1 0.138438582420349 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459817 chr7:142459804 nonsynonymous SNV 0.004 5 8 hm5C_associated_SNPs_21435 0 0 0 0 1 Cytosol 1 0.50023164392123 1 0.99953671215754 hm5C_site_22453 DeepMRMD:1;iRNA_m5C:0.99953671215754 22454 chr7 142459804 142459804 1 + C A COAD 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CCATCTATCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG < 41bp 1 0.146898637919564 1 0.234081625938416 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459804 nonsynonymous SNV 0.004 5 7 hm5C_associated_SNPs_21436 0 0 0 0 1 Cytosol 1 0.500231643976544 1 0.999536712046912 hm5C_site_22454 DeepMRMD:1;iRNA_m5C:0.999536712046912 22455 chr7 142459804 142459804 1 + C A COAD 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTATCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC < 41bp 1 0.291515838136267 1 0.494764477014542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459804 nonsynonymous SNV 0.004 5 4 hm5C_associated_SNPs_21438 0 0 0 0 1 Cytosol 1 0.50023164392422 1 0.99953671215156 hm5C_site_22455 DeepMRMD:1;iRNA_m5C:0.99953671215156 22456 chr7 142459804 142459804 1 + C A COAD 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTATCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC < 41bp 1 0.397983108585377 1 0.447665959596634 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459804 nonsynonymous SNV 0.004 5 3 hm5C_associated_SNPs_21439 0 0 0 0 1 Cytosol 1 0.5002316439145 1 0.999536712170999 hm5C_site_22456 DeepMRMD:1;iRNA_m5C:0.999536712170999 22457 chr4 76720859 76720859 1 + C A COAD 76720851 + 76720831 76720871 41 CAATTGTCCCATTGCAGTAACGCATTTTCTTCACAATTCAG CAATTGTCCCATTGCAGTAACGCATTTTATTCACAATTCAG < 41bp 1 0.191044083381172 1 0.0612104535102844 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76720851 chr4:76720859 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_21440 0 0 1 0 2 Nucleus 1 0.500231643905268 1 0.999536712189463 hm5C_site_22457 DeepMRMD:1;iRNA_m5C:0.999536712189463 22458 chr19 14512311 14512311 1 + C A COAD 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAAGATATAATGAGGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.238606467521177 1 0.0483613014221191 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512311 synonymous SNV . 0 12 hm5C_associated_SNPs_21441 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22458 DeepMRMD:1;iRNA_m5C:0.999536712157815 22459 chr13 52293466 52293466 1 + C T COAD 52293456 + 52293436 52293476 41 GGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA GGCAGCGCCTGGGAGGTTATCGGACCAGTGTTGTGGCCTCA < 41bp 1 0.477549305770621 1 0.901172637939453 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52293456 chr13:52293466 nonsynonymous SNV 0.988 2 31 hm5C_associated_SNPs_21442 0 0 1 0 1 Cytosol 1 0.500231642828302 0.197654724121094 0.999536714343396 hm5C_site_22459 DeepMRMD:0.197654724121094;iRNA_m5C:0.999536714343396 22460 chr8 124219663 124219663 1 + G A COAD 124219661 + 124219641 124219681 41 GCAGGCAGCCACCCCGGTACCCGAAGTGTGTCCGCGTCTTC GCAGGCAGCCACCCCGGTACCCAAAGTGTGTCCGCGTCTTC < 41bp 1 0.675944745764501 1 0.208119720220566 experiment 0.648110508470998 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM83A ENSG00000147689 CDS Human protein_coding chr8:124219661 chr8:124219663 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_21443 0 0 1 0 1 Cytosol 1 0.50023164406928 1 0.999536711861441 hm5C_site_22460 DeepMRMD:1;iRNA_m5C:0.999536711861441 22461 chr4 42024887 42024887 1 + G A COAD 42024868 + 42024848 42024888 41 TCTCTAGTGATCTAGAACAACTTCGAAAAATCAGACGACGA TCTCTAGTGATCTAGAACAACTTCGAAAAATCAGACGACAA < 41bp 1 0.372640638154111 1 0.267078638076782 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42024868 chr4:42024887 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_21444 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921218 1 0.999536712157565 hm5C_site_22461 DeepMRMD:1;iRNA_m5C:0.999536712157565 22462 chr5 33466980 33466980 1 + G A COAD 33466993 + 33466973 33467013 41 TAGGTACGACAACAATTCCACGATGCCAAATTCATGGCAGA TAGGTACAACAACAATTCCACGATGCCAAATTCATGGCAGA < 41bp 1 0.145515982548766 1 0.105035245418549 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33466993 chr5:33466980 nonsynonymous SNV 0.997 1 8 hm5C_associated_SNPs_21445 0 0 1 0 1 Nucleus 1 0.500231643921303 1 0.999536712157393 hm5C_site_22462 DeepMRMD:1;iRNA_m5C:0.999536712157393 22463 chr10 91532533 91532533 1 + A G COAD 91532517 + 91532497 91532537 41 CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAAACGG CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAGACGG < 41bp 1 0.304553285375495 1 0.503808438777924 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91532517 chr10:91532533 nonsynonymous SNV 0.991 3 37 hm5C_associated_SNPs_21446 0 0 1 0 2 Ribosome 1 0.500231643921092 0.992383122444152 0.999536712157815 hm5C_site_22463 DeepMRMD:0.992383122444152;iRNA_m5C:0.999536712157815 22464 chr21 45736396 45736396 1 + G A COAD 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCAACCGGA < 41bp 1 0.374553897094168 1 0.336008489131927 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736396 nonsynonymous SNV 0.662 5 35 hm5C_associated_SNPs_21447 0 0 1 0 2 Ribosome 1 0.500231644159125 1 0.999536711681749 hm5C_site_22464 DeepMRMD:1;iRNA_m5C:0.999536711681749 22465 chr21 45736396 45736396 1 + G A COAD 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCAACCGGATC < 41bp 1 0.0847944129907426 1 0.119255483150482 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736396 nonsynonymous SNV 0.662 5 33 hm5C_associated_SNPs_21448 0 0 1 0 2 Ribosome 1 0.500231643920932 1 0.999536712158136 hm5C_site_22465 DeepMRMD:1;iRNA_m5C:0.999536712158136 22466 chr21 45736396 45736396 1 + G A COAD 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCAACCGGATCC < 41bp 1 0.0801170541311789 1 0.06883904337883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736396 nonsynonymous SNV 0.662 5 32 hm5C_associated_SNPs_21449 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22466 DeepMRMD:1;iRNA_m5C:0.999536712157815 22467 chr21 45736396 45736396 1 + G A COAD 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACGCCCTCTGCCTTCAACCGGATCCT < 41bp 1 0.408520049874708 1 0.291873931884766 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736396 nonsynonymous SNV 0.662 5 31 hm5C_associated_SNPs_21450 0 0 1 0 2 Ribosome 1 0.500231643921112 1 0.999536712157776 hm5C_site_22467 DeepMRMD:1;iRNA_m5C:0.999536712157776 22468 chr2 45879498 45879498 1 + G A COAD 45879512 + 45879492 45879532 41 CACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTG CACGATACCCCCATAGGCTACGACGACTTCGTGGCCAACTG < 41bp 1 0.318347492929677 1 0.168233394622803 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCE ENSG00000171132 CDS Human protein_coding chr2:45879512 chr2:45879498 nonsynonymous SNV 0.998 1 7 hm5C_associated_SNPs_21451 0 0 1 0 1 chromatin 1 0.500231606253304 1 0.999536787493392 hm5C_site_22468 DeepMRMD:1;iRNA_m5C:0.999536787493392 22469 chr4 154318411 154318411 1 + G A COAD 154318425 + 154318405 154318445 41 CACTTCGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA CACTTCAAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA < 41bp 1 0.300892452089389 1 0.281884759664536 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MND1 ENSG00000121211 CDS Human protein_coding chr4:154318425 chr4:154318411 nonsynonymous SNV 0.855 0 7 hm5C_associated_SNPs_21452 0 0 1 0 2 chromatin 1 0.500231643921074 1 0.999536712157853 hm5C_site_22469 DeepMRMD:1;iRNA_m5C:0.999536712157853 22470 chr16 56362619 56362619 1 + C A COAD 56362604 + 56362584 56362624 41 AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCATGA AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGACATGA < 41bp 1 0.434209986458295 1 0.565219640731812 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56362604 chr16:56362619 nonsynonymous SNV 0.985 3 36 hm5C_associated_SNPs_21453 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643935861 0.869560718536376 0.999536712128279 hm5C_site_22470 DeepMRMD:0.869560718536376;iRNA_m5C:0.999536712128279 22471 chr3 127786399 127786399 1 + T C COAD 127786410 + 127786390 127786430 41 ATGCTGGGCTCCTGTGCATTCTTCTCCAAAACGTGGATTGA ATGCTGGGCCCCTGTGCATTCTTCTCCAAAACGTGGATTGA < 41bp 1 0.264825056023607 1 0.381560742855072 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127786410 chr3:127786399 nonsynonymous SNV 0.876 2 10 hm5C_associated_SNPs_21454 0 0 1 0 1 Ribosome 1 0.500231643921115 1 0.99953671215777 hm5C_site_22471 DeepMRMD:1;iRNA_m5C:0.99953671215777 22472 chr1 93988962 93988962 1 + C T COAD 93988959 + 93988939 93988979 41 AGTTAAATGACTATGCAGGACAGCGAGAAGTTGTAGCAGAA AGTTAAATGACTATGCAGGACAGTGAGAAGTTGTAGCAGAA < 41bp 1 0.360565272173362 1 0.165816247463226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:93988959 chr1:93988962 stopgain 1.000 1 24 hm5C_associated_SNPs_21455 0 0 1 0 2 Nucleus 1 0.500231549058431 1 0.999536901883138 hm5C_site_22472 DeepMRMD:1;iRNA_m5C:0.999536901883138 22473 chr5 179137044 179137044 1 + G T COAD 179137028 + 179137008 179137048 41 GCCAGATGCAGATCTGAAGACCTATTTTACTGATAAGAAAA GCCAGATGCAGATCTGAAGACCTATTTTACTGATAATAAAA < 41bp 1 0.0600962736739053 1 0.0819166600704193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179137028 chr5:179137044 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_21456 0 0 1 0 1 Nucleus 1 0.500229431470591 1 0.999541137058818 hm5C_site_22473 DeepMRMD:1;iRNA_m5C:0.999541137058818 22474 chr2 192141729 192141729 1 + G A COAD 192141711 + 192141691 192141731 41 GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAGAA GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAAAA < 41bp 1 0.365217392209723 1 0.124571055173874 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141711 chr2:192141729 synonymous SNV . 0 39 hm5C_associated_SNPs_21457 0 0 1 0 1 Nucleus 1 0.500231644398381 1 0.999536711203238 hm5C_site_22474 DeepMRMD:1;iRNA_m5C:0.999536711203238 22475 chr9 120476537 120476537 1 + G A COAD 120476528 + 120476508 120476548 41 CTCCATTTCAGCTCTGCCTTCACTACAGAGACTTTATTCCC CTCCATTTCAGCTCTGCCTTCACTACAGAAACTTTATTCCC < 41bp 1 0.417681319897218 1 0.235593765974045 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TLR4 ENSG00000136869 CDS Human protein_coding chr9:120476528 chr9:120476537 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_21458 0 0 0 0 0 cytosol 1 0.500231643956366 1 0.999536712087268 hm5C_site_22475 DeepMRMD:1;iRNA_m5C:0.999536712087268 22476 chr1 70700410 70700410 1 + C G COAD 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGGCTGCTTTGGGGGGTCCTACTCTTGATCCTGCCCTT < 41bp 1 0.281157820406932 1 0.130056172609329 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700410 nonsynonymous SNV 0.998 1 19 hm5C_associated_SNPs_21459 0 0 1 0 2 Nucleus 1 0.500231882307081 1 0.999536235385839 hm5C_site_22476 DeepMRMD:1;iRNA_m5C:0.999536235385839 22477 chr2 32640462 32640462 1 + G A COAD 32640443 + 32640423 32640463 41 TCAGCAATTTGCAGATGCAGCAGCCAACCTTACCTCTCCGG TCAGCAATTTGCAGATGCAGCAGCCAACCTTACCTCTCCAG < 41bp 1 0.117324098307564 1 0.775798916816711 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32640443 chr2:32640462 synonymous SNV . 0 40 hm5C_associated_SNPs_21460 0 0 1 0 0 Nucleus 1 0.500231643921092 0.448402166366578 0.999536712157815 hm5C_site_22477 DeepMRMD:0.448402166366578;iRNA_m5C:0.999536712157815 22478 chr14 100950404 100950404 1 + C A COAD 100950419 + 100950399 100950439 41 AACATCTTTTTATGTGGAGGCTTCAGCTCTGAAATGAAAGC AACATATTTTTATGTGGAGGCTTCAGCTCTGAAATGAAAGC < 41bp 1 0.176846161425975 1 0.321317136287689 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100950419 chr14:100950404 synonymous SNV . 0 6 hm5C_associated_SNPs_21461 0 0 0 0 2 chromatin 1 0.500231643924203 1 0.999536712151594 hm5C_site_22478 DeepMRMD:1;iRNA_m5C:0.999536712151594 22479 chrX 64956698 64956698 1 + A G COAD 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGGGAAGGAG < 41bp 1 0.58178139500506 1 0.563531279563904 experiment 0.83643720998988 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956698 nonsynonymous SNV 0.998 3 34 hm5C_associated_SNPs_21462 0 0 1 0 2 Ribosome 1 0.500231643921092 0.872937440872192 0.999536712157815 hm5C_site_22479 DeepMRMD:0.872937440872192;iRNA_m5C:0.999536712157815 22480 chr3 9489384 9489384 1 + A C COAD 9489393 + 9489373 9489413 41 ATTGCTGCAGAAAAACTAGTCCCCAAGCCACCTCCAGCAAA ATTGCTGCAGACAAACTAGTCCCCAAGCCACCTCCAGCAAA < 41bp 1 0.542962418640555 1 0.113795667886734 experiment 0.91407516271889 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9489393 chr3:9489384 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_21464 0 0 1 0 1 Nucleus 1 0.500231642803869 1 0.999536714392261 hm5C_site_22480 DeepMRMD:1;iRNA_m5C:0.999536714392261 22481 chr11 73068164 73068164 1 + G A COAD 73068165 + 73068145 73068185 41 AAGTCAGGCTCCCTGCGGCGCAGCTCCATGAGCCTGTGAGT AAGTCAGGCTCCCTGCGGCACAGCTCCATGAGCCTGTGAGT < 41bp 1 0.129506441828612 1 0.0574177801609039 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73068165 chr11:73068164 nonsynonymous SNV 0.999 4 20 hm5C_associated_SNPs_21465 0 0 1 0 2 Cytosol 1 0.500231643921086 1 0.999536712157827 hm5C_site_22481 DeepMRMD:1;iRNA_m5C:0.999536712157827 22482 chr1 171519335 171519335 1 + T C COAD 171519315 + 171519295 171519335 41 TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTT TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTC < 41bp 1 0.10057368256707 1 0.741185307502747 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171519315 chr1:171519335 synonymous SNV . 0 41 hm5C_associated_SNPs_21466 0 0 1 0 1 Cytosol 1 0.500231273734176 0.517629384994506 0.999537452531648 hm5C_site_22482 DeepMRMD:0.517629384994506;iRNA_m5C:0.999537452531648 22483 chr3 8607232 8607232 1 + G A COAD 8607252 + 8607232 8607272 41 GAGCCGCTGGTGGACCTCATCTACTTCTGGAAGGATGGTGC AAGCCGCTGGTGGACCTCATCTACTTCTGGAAGGATGGTGC < 41bp 1 0.57405395116608 1 0.601743578910828 experiment 0.85189209766784 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8607252 chr3:8607232 nonsynonymous SNV 0.987 5 1 hm5C_associated_SNPs_21467 0 0 0 0 0 exosome 1 0.500231643921379 0.796512842178344 0.999536712157242 hm5C_site_22483 DeepMRMD:0.796512842178344;iRNA_m5C:0.999536712157242 22484 chr11 113126684 113126684 1 + C T COAD 113126689 + 113126669 113126709 41 CAAGCAGGATGACGGCGGCTCCCCCATCAGACACTATCTGG CAAGCAGGATGACGGTGGCTCCCCCATCAGACACTATCTGG < 41bp 1 0.0912043667520578 1 0.0665747821331024 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113126689 chr11:113126684 synonymous SNV . 0 16 hm5C_associated_SNPs_21468 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_22484 DeepMRMD:1;iRNA_m5C:0.999536712157815 22485 chr18 8826092 8826092 1 + G A COAD 8826102 + 8826082 8826122 41 CGCTCACTGAGAACGTGGCCCGGATCCTCAACAAGAAGCTG CGCTCACTGAAAACGTGGCCCGGATCCTCAACAAGAAGCTG < 41bp 1 0.0898816730692939 1 0.0683072805404663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8826102 chr18:8826092 synonymous SNV . 0 11 hm5C_associated_SNPs_21469 0 0 0 0 0 Nucleus 1 0.500231643922114 1 0.999536712155771 hm5C_site_22485 DeepMRMD:1;iRNA_m5C:0.999536712155771 22486 chr1 114450784 114450784 1 + G A COAD 114450803 + 114450783 114450823 41 CGAAAACACCCACAACATAACATAAAGATTGGTGAGTTGTT CAAAAACACCCACAACATAACATAAAGATTGGTGAGTTGTT < 41bp 1 0.28761102348387 1 0.0924536287784576 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114450803 chr1:114450784 nonsynonymous SNV 0.914 0 2 hm5C_associated_SNPs_21470 0 0 1 0 1 chromatin 1 0.500244636669752 1 0.999510726660495 hm5C_site_22486 DeepMRMD:1;iRNA_m5C:0.999510726660495 22487 chr19 35530575 35530575 1 + G T COAD 35530583 + 35530563 35530603 41 TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAAT TGAAAGCAAAGATAACTGCACGGGCGTCCAGGTGGCCGAAT < 41bp 1 0.576914944187307 1 0.50132143497467 experiment 0.846170111625385 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530583 chr19:35530575 nonsynonymous SNV 0.999 1 13 hm5C_associated_SNPs_21471 0 0 0 0 2 exosome 1 0.500231643921094 0.99735713005066 0.999536712157812 hm5C_site_22487 DeepMRMD:0.99735713005066;iRNA_m5C:0.999536712157812 22488 chr6 151671598 151671598 1 + G T COAD 151671614 + 151671594 151671634 41 AAAAGAGCAAGGAGAGGGTCCTCTTCTGATGAGGAAGGGGG AAAATAGCAAGGAGAGGGTCCTCTTCTGATGAGGAAGGGGG < 41bp 1 0.0334998351866181 1 0.0979918837547302 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151671614 chr6:151671598 nonsynonymous SNV 0.962 4 5 hm5C_associated_SNPs_21472 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22488 DeepMRMD:1;iRNA_m5C:0.999536712157815 22489 chr7 139094363 139094363 1 + G T COAD 139094348 + 139094328 139094368 41 AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGATAAGAG < 41bp 1 0.506929175665854 1 0.351795077323914 experiment 0.986141648668291 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094348 chr7:139094363 stopgain 1.000 1 36 hm5C_associated_SNPs_21473 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_22489 DeepMRMD:1;iRNA_m5C:0.999536712157815 22490 chr7 139094363 139094363 1 + G T COAD 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA AGAAAAGAAACCAGGAACGGCTGAAACGAAGATAAGAGAGA < 41bp 1 0.52678348837188 1 0.438538461923599 experiment 0.94643302325624 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094363 stopgain 1.000 1 33 hm5C_associated_SNPs_21474 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_22490 DeepMRMD:1;iRNA_m5C:0.999536712157815 22491 chr7 139094363 139094363 1 + G T COAD 139094357 + 139094337 139094377 41 GAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGA GAAACCAGGAACGGCTGAAACGAAGATAAGAGAGAGAGAGA < 41bp 1 0.673133203753169 1 0.698159396648407 experiment 0.653733592493663 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094357 chr7:139094363 stopgain 1.000 1 27 hm5C_associated_SNPs_21475 0 0 1 0 2 unknown 1 0.500231643921093 0.603681206703186 0.999536712157815 hm5C_site_22491 DeepMRMD:0.603681206703186;iRNA_m5C:0.999536712157815 22492 chr20 34092625 34092625 1 + C A COAD 34092606 + 34092586 34092626 41 AAACCTCCCCAATGGAGGAACAATCTCTAAAACTTGATTCT AAACCTCCCCAATGGAGGAACAATCTCTAAAACTTGATTAT < 41bp 1 0.0344773986404759 1 0.0788496732711792 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP250 ENSG00000126001 CDS Human protein_coding chr20:34092606 chr20:34092625 nonsynonymous SNV 0.050 0 40 hm5C_associated_SNPs_21476 0 0 0 0 0 Cytosol 1 0.500231643921082 1 0.999536712157836 hm5C_site_22492 DeepMRMD:1;iRNA_m5C:0.999536712157836 22493 chr1 242030149 242030149 1 + T C COAD 242030150 + 242030130 242030170 41 AGCCTGCCCATTCAAGAAGTCATAGTTGGGATGACAAAACA AGCCTGCCCATTCAAGAAGCCATAGTTGGGATGACAAAACA < 41bp 1 0.195544424405565 1 0.0657819211483002 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242030150 chr1:242030149 synonymous SNV . 0 20 hm5C_associated_SNPs_21477 0 0 1 0 1 Nucleus 1 0.500231647800912 1 0.999536704398176 hm5C_site_22493 DeepMRMD:1;iRNA_m5C:0.999536704398176 22494 chr1 3646683 3646683 1 + C T COAD 3646695 + 3646675 3646715 41 GCACAGTTCGGCAGCTACACCCAACCTGGGGCCCGTGGGTG GCACAGTTTGGCAGCTACACCCAACCTGGGGCCCGTGGGTG < 41bp 1 0.181603887821932 1 0.420346975326538 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TP73 ENSG00000078900 CDS Human protein_coding chr1:3646695 chr1:3646683 nonsynonymous SNV 0.010 1 9 hm5C_associated_SNPs_21478 0 0 0 0 1 chromatin 1 0.500233641925237 1 0.999532716149527 hm5C_site_22494 DeepMRMD:1;iRNA_m5C:0.999532716149527 22495 chr2 32800267 32800267 1 + G A COAD 32800281 + 32800261 32800301 41 CTGCTGGAATTGCTTCGGGCCATTGCTTCTTGTGCTGCCAT CTGCTGAAATTGCTTCGGGCCATTGCTTCTTGTGCTGCCAT < 41bp 1 0.0379342771466209 1 0.122171849012375 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32800281 chr2:32800267 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_21479 0 0 1 0 1 Nucleus 1 0.500231643984365 1 0.99953671203127 hm5C_site_22495 DeepMRMD:1;iRNA_m5C:0.99953671203127 22496 chr5 32093031 32093031 1 + C A COAD 32093044 + 32093024 32093064 41 TTCTAGTCTCAGCGGGGGACCAGCAAAGATTACAGTCTGTT TTCTAGTATCAGCGGGGGACCAGCAAAGATTACAGTCTGTT < 41bp 1 0.149049559857833 1 0.517552435398102 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32093044 chr5:32093031 synonymous SNV . 0 8 hm5C_associated_SNPs_21480 0 0 0 0 2 chromatin 1 0.500231688841957 0.964895129203796 0.999536622316085 hm5C_site_22496 DeepMRMD:0.964895129203796;iRNA_m5C:0.999536622316085 22497 chr7 129046288 129046288 1 + A G COAD 129046285 + 129046265 129046305 41 TGTATGTAACTGAAATTGACCCCATCTGTGCCCTGCAAGCC TGTATGTAACTGAAATTGACCCCGTCTGTGCCCTGCAAGCC < 41bp 1 0.269507718611059 1 0.0375047624111176 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129046285 chr7:129046288 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_21481 0 0 0 0 2 chromatin 1 0.500231637116014 1 0.999536725767973 hm5C_site_22497 DeepMRMD:1;iRNA_m5C:0.999536725767973 22498 chr20 31021610 31021610 1 + G A COAD 31021621 + 31021601 31021641 41 TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATCGTCAGTC TCCTTTCCCAAAAAGAAGCCCCGGCTTGAAGATCGTCAGTC < 41bp 1 0.128894105335494 1 0.216788083314896 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021621 chr20:31021610 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_21482 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22498 DeepMRMD:1;iRNA_m5C:0.999536712157815 22499 chr5 130726772 130726772 1 + G A COAD 130726785 + 130726765 130726805 41 TGGATACGAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA TGGATACAAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA < 41bp 1 0.521209314156956 1 0.119771957397461 experiment 0.957581371686088 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC42SE2 ENSG00000158985 CDS Human protein_coding chr5:130726785 chr5:130726772 synonymous SNV . 0 8 hm5C_associated_SNPs_21483 0 0 1 0 2 Ribosome 1 0.500231643968613 1 0.999536712062774 hm5C_site_22499 DeepMRMD:1;iRNA_m5C:0.999536712062774 22500 chr1 168014214 168014214 1 + T C COAD 168014224 + 168014204 168014244 41 TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT TTGATCGCTCCTGTGGGGTTCCAGAAGAATCTGCTTCATCT < 41bp 1 0.39582916803499 1 0.474137127399445 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168014224 chr1:168014214 synonymous SNV . 0 11 hm5C_associated_SNPs_21485 0 0 1 0 1 Cytosol 1 0.500231643921083 1 0.999536712157834 hm5C_site_22500 DeepMRMD:1;iRNA_m5C:0.999536712157834 22501 chr18 48604717 48604717 1 + C G COAD 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAAAGGCTGGGGACCGGATTAGCCAAGACAGAGCA < 41bp 1 0.482256560135884 1 0.632801651954651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604717 stopgain 1.000 1 28 hm5C_associated_SNPs_21486 0 0 1 0 1 Cytosol 1 0.500231643921092 0.734396696090698 0.999536712157815 hm5C_site_22501 DeepMRMD:0.734396696090698;iRNA_m5C:0.999536712157815 22502 chr18 2751361 2751361 1 + G A COAD 2751377 + 2751357 2751397 41 AGCTGTCTACCAGTGGGAACCGACCCCCAGCAAATGTGAGT AGCTATCTACCAGTGGGAACCGACCCCCAGCAAATGTGAGT < 41bp 1 0.146025089404906 1 0.466603130102158 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2751377 chr18:2751361 synonymous SNV . 0 5 hm5C_associated_SNPs_21487 0 0 1 0 2 Nucleus 1 0.500231730948163 1 0.999536538103673 hm5C_site_22502 DeepMRMD:1;iRNA_m5C:0.999536538103673 22503 chr7 21631037 21631037 1 + A T COAD 21631019 + 21630999 21631039 41 AGCACAGAGTTGAGCGCACACAGAAAAACGTGAAGGTGATC AGCACAGAGTTGAGCGCACACAGAAAAACGTGAAGGTGTTC < 41bp 1 0.549716458092341 1 0.467310011386871 experiment 0.900567083815318 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21631019 chr7:21631037 nonsynonymous SNV 0.460 2 39 hm5C_associated_SNPs_21489 0 0 0 0 0 nucleolus 1 0.500231643922403 1 0.999536712155195 hm5C_site_22503 DeepMRMD:1;iRNA_m5C:0.999536712155195 22504 chr12 110457028 110457028 1 + G A COAD 110457008 + 110456988 110457028 41 GTCACCACCGAACGCTTCGACCTTTCCCAAGAAATGGAGCG GTCACCACCGAACGCTTCGACCTTTCCCAAGAAATGGAGCA < 41bp 1 0.0139172734935249 1 0.0654219686985016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110457008 chr12:110457028 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_21490 0 0 1 1 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_22504 DeepMRMD:1;iRNA_m5C:0.999536712157815 22505 chr1 230379147 230379147 1 + G A COAD 230379152 + 230379132 230379172 41 AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA AATGAGCACTGGCTGAAGCCCCTCCTGGAAAGGGTGGCGGA < 41bp 1 0.0719049641685656 1 0.098885178565979 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230379152 chr1:230379147 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_21491 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22505 DeepMRMD:1;iRNA_m5C:0.999536712157815 22506 chr7 98563390 98563390 1 + C T COAD 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACGCGCCTGGCAGTGATGAGCATGGAGATGTGGAAGAACTT < 41bp 1 0.162231347450355 1 0.385553896427155 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563390 nonsynonymous SNV 0.998 4 31 hm5C_associated_SNPs_21492 0 0 1 0 1 Nucleus 1 0.500231643920711 1 0.999536712158579 hm5C_site_22506 DeepMRMD:1;iRNA_m5C:0.999536712158579 22507 chr6 144782343 144782343 1 + C T COAD 144782344 + 144782324 144782364 41 AATAAACAGAACTGAAGGGCCAACCTGGACATGCATATCTG AATAAACAGAACTGAAGGGTCAACCTGGACATGCATATCTG < 41bp 1 0.0498264360246731 1 0.112891912460327 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144782344 chr6:144782343 synonymous SNV . 0 20 hm5C_associated_SNPs_21493 0 0 1 0 1 Nucleus 1 0.500231643968969 1 0.999536712062062 hm5C_site_22507 DeepMRMD:1;iRNA_m5C:0.999536712062062 22508 chr7 43591841 43591841 1 + G A COAD 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTCGAGGCTGGTATCCGTGTTTGATGCCAGGGAGC < 41bp 1 0.210981113023713 1 0.612351417541504 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591841 synonymous SNV . 0 19 hm5C_associated_SNPs_21494 0 0 0 0 2 Cytosol 1 0.500232810098186 0.775297164916992 0.999534379803628 hm5C_site_22508 DeepMRMD:0.775297164916992;iRNA_m5C:0.999534379803628 22509 chr15 25220524 25220524 1 + A G COAD 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGTAGCAGGATGCTGCAGCACATTGACTATAGA < 41bp 1 0.641117452562414 1 0.520973026752472 experiment 0.717765094875172 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220524 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_21495 0 0 0 2 1 Cytosol 1 0.500231647480903 0.958053946495056 0.999536705038193 hm5C_site_22509 DeepMRMD:0.958053946495056;iRNA_m5C:0.999536705038193 22510 chr14 39649837 39649837 1 + A C COAD 39649851 + 39649831 39649871 41 ACAAGAAGAGGGTAAGGTGGCTCAGCGAGAGGAAGAGTTGG ACAAGACGAGGGTAAGGTGGCTCAGCGAGAGGAAGAGTTGG < 41bp 1 0.672150389730877 1 0.347870141267776 experiment 0.655699220538247 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39649851 chr14:39649837 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_21496 0 0 1 0 0 Nucleus 1 0.500231643937488 1 0.999536712125024 hm5C_site_22510 DeepMRMD:1;iRNA_m5C:0.999536712125024 22511 chr7 158734631 158734631 1 + G A COAD 158734618 + 158734598 158734638 41 CTTTCTTCCTGGTCATAGGCCGGCTGTTCGGACGGAAGCAT CTTTCTTCCTGGTCATAGGCCGGCTGTTCGGACAGAAGCAT < 41bp 1 0.443266236086719 1 0.43527352809906 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR60 ENSG00000126870 CDS Human protein_coding chr7:158734618 chr7:158734631 nonsynonymous SNV 0.026 4 34 hm5C_associated_SNPs_21498 0 0 1 0 1 Nucleus 1 0.500231622805404 1 0.999536754389192 hm5C_site_22511 DeepMRMD:1;iRNA_m5C:0.999536754389192 22512 chr7 72409179 72409179 1 + C A COAD 72409185 + 72409165 72409205 41 TCTAGCCCAGCCTCCTCCCGCTCCCAGACACCGGAGAGGCC TCTAGCCCAGCCTCATCCCGCTCCCAGACACCGGAGAGGCC < 41bp 1 0.0965145675504916 1 0.153634399175644 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72409185 chr7:72409179 synonymous SNV . 0 15 hm5C_associated_SNPs_21499 0 0 1 0 2 Endoplasmic reticulum 1 0.500231642364818 1 0.999536715270365 hm5C_site_22512 DeepMRMD:1;iRNA_m5C:0.999536715270365 22513 chr18 8819069 8819069 1 + G A COAD 8819061 + 8819041 8819081 41 CCAGGGAAGCCTCCGCATGCCCCGTCCAGTGGCCATGTGGC CCAGGGAAGCCTCCGCATGCCCCGTCCAATGGCCATGTGGC < 41bp 1 0.172999013907055 1 0.0809758901596069 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8819061 chr18:8819069 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_21500 0 0 0 0 1 Nucleus 1 0.500231643921098 1 0.999536712157805 hm5C_site_22513 DeepMRMD:1;iRNA_m5C:0.999536712157805 22514 chr7 43591835 43591835 1 + G A COAD 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTCGAGACTGGTGTCCGTGTTTGATGCCAGGGAGC < 41bp 1 0.133698255358718 1 0.195550322532654 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591835 synonymous SNV . 0 13 hm5C_associated_SNPs_21501 0 0 0 0 1 Cytosol 1 0.500230729192107 1 0.999538541615785 hm5C_site_22514 DeepMRMD:1;iRNA_m5C:0.999538541615785 22515 chr11 129996702 129996702 1 + C T COAD 129996707 + 129996687 129996727 41 GAGCAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGT GAGCAGCTGGAGATTTGGCACCGCAACCGAATGGACAGGGT < 41bp 1 0.4721625311838 1 0.315239191055298 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:129996707 chr11:129996702 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_21502 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643896715 1 0.99953671220657 hm5C_site_22515 DeepMRMD:1;iRNA_m5C:0.99953671220657 22516 chr11 129996702 129996702 1 + C T COAD 129996710 + 129996690 129996730 41 CAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAA CAGCTGGAGATTTGGCACCGCAACCGAATGGACAGGGTAAA < 41bp 1 0.158220643360101 1 0.0993850231170654 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:129996710 chr11:129996702 nonsynonymous SNV 0.997 4 13 hm5C_associated_SNPs_21503 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_22516 DeepMRMD:1;iRNA_m5C:0.999536712157815 22517 chr1 26142147 26142147 1 + G A COAD 26142138 + 26142118 26142158 41 TCTCATCCACCTTTGAAGACCCGTCCACGGCCACCTACATG TCTCATCCACCTTTGAAGACCCGTCCACGACCACCTACATG < 41bp 1 0.0276709906392301 1 0.22122249007225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26142138 chr1:26142147 nonsynonymous SNV 0.993 2 30 hm5C_associated_SNPs_21504 0 0 1 0 0 unknown 1 0.500230883192757 1 0.999538233614487 hm5C_site_22517 DeepMRMD:1;iRNA_m5C:0.999538233614487 22518 chr12 6979509 6979509 1 + A G COAD 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCCTTGTGGGTGGTGCTTCCCTCGAGCCCGAATTCGTGG < 41bp 1 0.177062532904147 1 0.0461088120937347 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979509 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_21505 0 0 1 0 1 Ribosome 1 0.500231668785199 1 0.999536662429602 hm5C_site_22518 DeepMRMD:1;iRNA_m5C:0.999536662429602 22519 chr12 6979509 6979509 1 + A G COAD 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGTGGTGCTTCCCTCGAGCCCGAATTCGTGGACAT < 41bp 1 0.657611457973428 1 0.798855781555176 experiment 0.684777084053145 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979509 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_21506 0 0 1 0 1 Ribosome 1 0.500231643921094 0.402288436889648 0.999536712157812 hm5C_site_22519 DeepMRMD:0.402288436889648;iRNA_m5C:0.999536712157812 22520 chr1 45268976 45268976 1 + G A COAD 45268980 + 45268960 45269000 41 CCCTATCAGCAGCTGCGTGACAGTCCCAGACCTGACACCCC CCCTATCAGCAGCTGCATGACAGTCCCAGACCTGACACCCC < 41bp 1 0.240409608160871 1 0.422540217638016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268980 chr1:45268976 nonsynonymous SNV 0.959 0 17 hm5C_associated_SNPs_21507 0 0 0 0 1 Cytosol 1 0.500231747331388 1 0.999536505337224 hm5C_site_22520 DeepMRMD:1;iRNA_m5C:0.999536505337224 22521 chr9 7174665 7174665 1 + C T COAD 7174666 + 7174646 7174686 41 TTTAAGAATGAATATGTGGCCGACCCTGTATACCGCACTTT TTTAAGAATGAATATGTGGTCGACCCTGTATACCGCACTTT < 41bp 1 0.167395648026102 1 0.04806187748909 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4C ENSG00000107077 CDS Human protein_coding chr9:7174666 chr9:7174665 nonsynonymous SNV 0.995 2 20 hm5C_associated_SNPs_21508 0 0 0 0 0 Nucleus 1 0.50023164309042 1 0.99953671381916 hm5C_site_22521 DeepMRMD:1;iRNA_m5C:0.99953671381916 22522 chr17 33324842 33324842 1 + A G COAD 33324843 + 33324823 33324863 41 CTCAGAAATGAAGCGAGTCACAGTAAGTGAAGACCCTATGC CTCAGAAATGAAGCGAGTCGCAGTAAGTGAAGACCCTATGC < 41bp 1 0.619106891285323 1 0.683338522911072 experiment 0.761786217429354 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33324843 chr17:33324842 nonsynonymous SNV 0.931 0 20 hm5C_associated_SNPs_21509 0 0 1 0 2 Cytosol 1 0.500231643924505 0.633322954177856 0.99953671215099 hm5C_site_22522 DeepMRMD:0.633322954177856;iRNA_m5C:0.99953671215099 22523 chr8 100182331 100182331 1 + C A COAD 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACAAGTTATTCCCTCTTTCAGC < 41bp 1 0.163975989043413 1 0.155690491199493 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182331 nonsynonymous SNV 0.988 2 22 hm5C_associated_SNPs_21510 0 0 1 0 2 Nucleus 1 0.500231644025249 1 0.999536711949503 hm5C_site_22523 DeepMRMD:1;iRNA_m5C:0.999536711949503 22524 chr4 1206094 1206094 1 + G A COAD 1206086 - 1206066 1206106 41 CCACCCGCCCCACGCCCCTTCTCCTGGCCAAACCGTCAAGC CCACCCGCCCCATGCCCCTTCTCCTGGCCAAACCGTCAAGC < 41bp 1 0.475420266364958 1 0.396892547607422 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1206086 chr4:1206094 synonymous SNV . 0 13 hm5C_associated_SNPs_21511 0 0 1 0 0 Ribosome 1 0.50023165373995 1 0.9995366925201 hm5C_site_22524 DeepMRMD:1;iRNA_m5C:0.9995366925201 22525 chr1 201174412 201174412 1 + T C COAD 201174417 + 201174397 201174437 41 GGTGAGGGGGGCACGTTTCTCAGACATGGGCCCCTATTCGC GGTGAGGGGGGCACGCTTCTCAGACATGGGCCCCTATTCGC < 41bp 1 0.685410039691526 1 0.751786708831787 experiment 0.629179920616949 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201174417 chr1:201174412 synonymous SNV . 0 16 hm5C_associated_SNPs_21512 0 0 0 0 1 exosome 1 0.50023164391956 0.496426582336426 0.99953671216088 hm5C_site_22525 DeepMRMD:0.496426582336426;iRNA_m5C:0.99953671216088 22526 chr19 39950201 39950201 1 + A T COAD 39950216 + 39950196 39950236 41 TAGGGATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG TAGGGTTCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG < 41bp 1 0.0314546931305208 1 0.0857913196086884 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950216 chr19:39950201 nonsynonymous SNV 0.965 4 6 hm5C_associated_SNPs_21513 0 0 1 0 2 Nucleus 1 0.50023164392109 1 0.99953671215782 hm5C_site_22526 DeepMRMD:1;iRNA_m5C:0.99953671215782 22527 chr19 39950201 39950201 1 + A T COAD 39950220 + 39950200 39950240 41 GATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT GTTCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT < 41bp 1 0.43282125474412 1 0.820258498191833 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950220 chr19:39950201 nonsynonymous SNV 0.965 4 2 hm5C_associated_SNPs_21514 0 0 1 0 2 Nucleus 1 0.500231643921092 0.359483003616334 0.999536712157815 hm5C_site_22527 DeepMRMD:0.359483003616334;iRNA_m5C:0.999536712157815 22528 chr22 29695770 29695770 1 + G C COAD 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGCCCCCCTGGACCTTTGATGGAACAGATGGGAG < 41bp 1 0.405065926262223 1 0.147102952003479 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695770 synonymous SNV . 0 10 hm5C_associated_SNPs_21515 0 0 1 0 1 Cytosol 1 0.500231643920823 1 0.999536712158354 hm5C_site_22528 DeepMRMD:1;iRNA_m5C:0.999536712158354 22529 chr3 119135064 119135064 1 + C T COAD 119135071 + 119135051 119135091 41 TTACCAGCCTCAGCGGAGATCAGTAATTCTGGATGGAAGAA TTACCAGCCTCAGTGGAGATCAGTAATTCTGGATGGAAGAA < 41bp 1 0.221658850590048 1 0.191858172416687 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119135071 chr3:119135064 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_21516 0 0 0 0 0 cytosol 1 0.500231643921107 1 0.999536712157785 hm5C_site_22529 DeepMRMD:1;iRNA_m5C:0.999536712157785 22530 chr6 84629139 84629139 1 + C A COAD 84629154 + 84629134 84629174 41 AGACTCTTTAGTCACCATTGCCATATATACTAAACAGAAGG AGACTATTTAGTCACCATTGCCATATATACTAAACAGAAGG < 41bp 1 0.104734648244769 1 0.509474754333496 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84629154 chr6:84629139 nonsynonymous SNV 0.962 1 6 hm5C_associated_SNPs_21518 0 0 1 0 2 Ribosome 1 0.500231643921408 0.981050491333008 0.999536712157184 hm5C_site_22530 DeepMRMD:0.981050491333008;iRNA_m5C:0.999536712157184 22531 chr14 102502958 102502958 1 + C T COAD 102502965 + 102502945 102502985 41 GTGCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGT GTGCACTGAGATTTGGTAACCCCCTTCTGGTCCAGGTTGGT < 41bp 1 0.0362114391661291 1 0.0564897656440735 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502965 chr14:102502958 synonymous SNV . 0 14 hm5C_associated_SNPs_21519 1 0 1 0 1 Cytosol 1 0.500231643922952 1 0.999536712154096 hm5C_site_22531 DeepMRMD:1;iRNA_m5C:0.999536712154096 not specified not specified 22532 chr14 102502958 102502958 1 + C T COAD 102502967 + 102502947 102502987 41 GCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGTGT GCACTGAGATTTGGTAACCCCCTTCTGGTCCAGGTTGGTGT < 41bp 1 0.00915632850289631 1 0.0286121666431427 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502967 chr14:102502958 synonymous SNV . 0 12 hm5C_associated_SNPs_21520 1 0 1 0 1 Cytosol 1 0.500231643924742 1 0.999536712150516 hm5C_site_22532 DeepMRMD:1;iRNA_m5C:0.999536712150516 not specified not specified 22533 chr2 64112917 64112917 1 + C T COAD 64112920 + 64112900 64112940 41 CATAGATAATCTGGGTGCCACAGTGGATCTGTATATTCTTA CATAGATAATCTGGGTGTCACAGTGGATCTGTATATTCTTA < 41bp 1 0.506445269316435 1 0.694002330303192 experiment 0.987109461367129 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UGP2 ENSG00000169764 CDS Human protein_coding chr2:64112920 chr2:64112917 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_21521 0 0 1 0 0 Ribosome 1 0.500231639351114 0.611995339393616 0.999536721297772 hm5C_site_22533 DeepMRMD:0.611995339393616;iRNA_m5C:0.999536721297772 22534 chr6 158900912 158900912 1 + G A COAD 158900920 + 158900900 158900940 41 CAGCAGGCCATCGCCAGCACCTTGCGTGAGGACAAGGACGT CAGCAGGCCATCACCAGCACCTTGCGTGAGGACAAGGACGT < 41bp 1 0.139918051620846 1 0.125069707632065 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158900920 chr6:158900912 nonsynonymous SNV 0.995 2 13 hm5C_associated_SNPs_21522 0 0 1 0 1 Ribosome 1 0.50029551635682 1 0.99940896728636 hm5C_site_22534 DeepMRMD:1;iRNA_m5C:0.99940896728636 22535 chr3 66430799 66430799 1 + A T COAD 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGATTCCAAT < 41bp 1 0.509704385288234 1 0.415085673332214 experiment 0.980591229423531 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430799 nonsynonymous SNV 0.291 1 34 hm5C_associated_SNPs_21523 0 0 0 0 0 Ribosome 1 0.50023164547698 1 0.999536709046041 hm5C_site_22535 DeepMRMD:1;iRNA_m5C:0.999536709046041 22536 chr3 127325561 127325561 1 + C T COAD 127325576 + 127325556 127325596 41 AATTTCGTCCTGGGTCCTTTCTGCCAGTCCCAGAACCAGGA AATTTTGTCCTGGGTCCTTTCTGCCAGTCCCAGAACCAGGA < 41bp 1 0.518765879867231 1 0.661551833152771 experiment 0.962468240265538 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127325576 chr3:127325561 synonymous SNV . 0 6 hm5C_associated_SNPs_21524 0 0 1 0 1 Cytosol 1 0.500231643921092 0.676896333694458 0.999536712157815 hm5C_site_22536 DeepMRMD:0.676896333694458;iRNA_m5C:0.999536712157815 22537 chr1 156351627 156351627 1 + G A COAD 156351618 + 156351598 156351638 41 TCCACATCCAAAATGCAGCGCTGGCTGGAGGGGTTGTGGTG TCCACATCCAAAATGCAGCGCTGGCTGGAAGGGTTGTGGTG < 41bp 1 0.377702213248573 1 0.103717744350433 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHBG ENSG00000132677 CDS Human protein_coding chr1:156351618 chr1:156351627 nonsynonymous SNV 0.905 2 30 hm5C_associated_SNPs_21525 0 0 0 0 2 Cytosol 1 0.500226729525494 1 0.999546540949013 hm5C_site_22537 DeepMRMD:1;iRNA_m5C:0.999546540949013 22538 chr3 111705829 111705829 1 + C T COAD 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTTGTGGCT < 41bp 1 0.498955349096243 1 0.128005564212799 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705829 synonymous SNV . 0 35 hm5C_associated_SNPs_21526 0 0 0 0 2 Ribosome 1 0.500231643917133 1 0.999536712165735 hm5C_site_22538 DeepMRMD:1;iRNA_m5C:0.999536712165735 22539 chr2 233681635 233681635 1 + C T COAD 233681615 + 233681595 233681635 41 AAGAGAGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGC AAGAGAGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGT < 41bp 1 0.238218319615128 1 0.418687343597412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681615 chr2:233681635 stopgain 1.000 1 41 hm5C_associated_SNPs_21527 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22539 DeepMRMD:1;iRNA_m5C:0.999536712157815 22540 chr2 228162509 228162509 1 + C T COAD 228162527 + 228162507 228162547 41 GTCTGCCCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT GTTTGCCCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT < 41bp 1 0.17641490345086 1 0.142980962991714 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228162527 chr2:228162509 synonymous SNV . 0 3 hm5C_associated_SNPs_21528 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22540 DeepMRMD:1;iRNA_m5C:0.999536712157815 22541 chr1 161761932 161761932 1 + A C COAD 161761929 + 161761909 161761949 41 TCCAGAAAATGGACTGACTCCAAAGAAAAAAATTCAGGTGA TCCAGAAAATGGACTGACTCCAACGAAAAAAATTCAGGTGA < 41bp 1 0.492026231367015 1 0.670128166675568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161761929 chr1:161761932 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_21529 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643878739 0.659743666648864 0.999536712242522 hm5C_site_22541 DeepMRMD:0.659743666648864;iRNA_m5C:0.999536712242522 22542 chr3 13672917 13672917 1 + G A COAD 13672900 + 13672880 13672920 41 TCAACGTGCCAGGGAGCTACCAGTGTGCATGCCCTGAGCAG TCAACGTGCCAGGGAGCTACCAGTGTGCATGCCCTGAACAG < 41bp 1 0.609269067951223 1 0.456299781799316 experiment 0.781461864097554 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672900 chr3:13672917 synonymous SNV . 0 38 hm5C_associated_SNPs_21530 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643915794 1 0.999536712168412 hm5C_site_22542 DeepMRMD:1;iRNA_m5C:0.999536712168412 22543 chr4 170616794 170616794 1 + C A COAD 170616800 + 170616780 170616820 41 AGCTGCAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG AGCTGCAGGGGTTTATGTAGCTTTTGGTGCACCAATTGGAG < 41bp 1 0.129121638119174 1 0.0768114328384399 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170616800 chr4:170616794 nonsynonymous SNV 0.997 5 15 hm5C_associated_SNPs_21531 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22543 DeepMRMD:1;iRNA_m5C:0.999536712157815 22544 chr2 74326607 74326607 1 + T G COAD 74326589 + 74326569 74326609 41 TCCCCCGCGAGGTCCGACGCCTGCCCGAGCCTGCCAAGTCC TCCCCCGCGAGGTCCGACGCCTGCCCGAGCCTGCCAAGGCC < 41bp 1 0.290478303130056 1 0.0852178335189819 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74326589 chr2:74326607 nonsynonymous SNV 0.993 1 39 hm5C_associated_SNPs_21532 0 0 0 0 0 Cytosol 1 0.500231626583582 1 0.999536746832837 hm5C_site_22544 DeepMRMD:1;iRNA_m5C:0.999536746832837 22545 chr7 74146987 74146987 1 + C T COAD 74146969 + 74146949 74146989 41 CTCGCCTGGAGAGGATATTACTTGCAAAGGAAAGGATTCGT CTCGCCTGGAGAGGATATTACTTGCAAAGGAAAGGATTTGT < 41bp 1 0.195806489605536 1 0.0379040837287903 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2I ENSG00000077809 CDS Human other chr7:74146969 chr7:74146987 nonsynonymous SNV 0.997 2 39 hm5C_associated_SNPs_21533 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_22545 DeepMRMD:1;iRNA_m5C:0.999536712157815 22546 chr7 34125566 34125566 1 + G A COAD 34125549 + 34125529 34125569 41 GAATCTTGGAGGGTGGAGTCCAATGAGTTCTGCAACAGACC GAATCTTGGAGGGTGGAGTCCAATGAGTTCTGCAACAAACC < 41bp 1 0.139845036049903 1 0.204327046871185 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMPER ENSG00000164619 CDS Human protein_coding chr7:34125549 chr7:34125566 nonsynonymous SNV 0.973 1 38 hm5C_associated_SNPs_21534 0 0 0 0 0 exosome 1 0.500231644350819 1 0.999536711298363 hm5C_site_22546 DeepMRMD:1;iRNA_m5C:0.999536711298363 22547 chr10 93695422 93695422 1 + G A COAD 93695421 + 93695401 93695441 41 TTTGTTATTTCAGGCTAGATCGCCTTTTTATTTTACTGGAT TTTGTTATTTCAGGCTAGATCACCTTTTTATTTTACTGGAT < 41bp 1 0.400826848188061 1 0.460180133581161 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93695421 chr10:93695422 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_21535 0 0 1 0 1 Nucleus 1 0.500231643921105 1 0.99953671215779 hm5C_site_22547 DeepMRMD:1;iRNA_m5C:0.99953671215779 22548 chr5 159344761 159344761 1 + T G COAD 159344770 + 159344750 159344790 41 GCTGTCAAACTTTTTAAGTTCTCCAGGGAAAAGAAAGCAGC GCTGTCAAACTGTTTAAGTTCTCCAGGGAAAAGAAAGCAGC < 41bp 1 0.674305561372897 1 0.93601405620575 experiment 0.651388877254205 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout ADRA1B ENSG00000170214 CDS Human protein_coding chr5:159344770 chr5:159344761 synonymous SNV . 0 12 hm5C_associated_SNPs_21536 0 0 0 0 0 exosome 1 0.500231643921563 0.1279718875885 0.999536712156874 hm5C_site_22548 DeepMRMD:0.1279718875885;iRNA_m5C:0.999536712156874 22549 chr17 71232497 71232497 1 + C A COAD 71232491 + 71232471 71232511 41 ATGAGCTCATTAGGTAAAATCCAAGTCATGGAGAAACAAGA ATGAGCTCATTAGGTAAAATCCAAGTAATGGAGAAACAAGA < 41bp 1 0.201386261208024 1 0.15519642829895 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71232491 chr17:71232497 synonymous SNV . 0 27 hm5C_associated_SNPs_21537 0 0 1 0 0 chromatin 1 0.500240425160219 1 0.999519149679562 hm5C_site_22549 DeepMRMD:1;iRNA_m5C:0.999519149679562 22550 chr7 142459771 142459771 1 + G A COAD 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATGACATCATGTTAATCAAGCTCTCCTCACATGCAGT < 41bp 1 0.457578059159229 1 0.656665086746216 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459771 nonsynonymous SNV 0.000 2 35 hm5C_associated_SNPs_21538 0 0 0 0 0 Cytosol 1 0.500231643602294 0.686669826507568 0.999536712795411 hm5C_site_22550 DeepMRMD:0.686669826507568;iRNA_m5C:0.999536712795411 22551 chr7 142459771 142459771 1 + G A COAD 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATGACATCATGTTAATCAAGCTCTCCTCACATGCAGTAATC < 41bp 1 0.185641604929221 1 0.0325114130973816 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459771 nonsynonymous SNV 0.000 2 31 hm5C_associated_SNPs_21539 0 0 0 0 0 Cytosol 1 0.5002316435127 1 0.9995367129746 hm5C_site_22551 DeepMRMD:1;iRNA_m5C:0.9995367129746 22552 chr7 142459771 142459771 1 + G A COAD 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA GACATCATGTTAATCAAGCTCTCCTCACATGCAGTAATCAA < 41bp 1 0.415404319920332 1 0.130090206861496 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459771 nonsynonymous SNV 0.000 2 29 hm5C_associated_SNPs_21540 0 0 0 0 0 Cytosol 1 0.500231646404986 1 0.999536707190029 hm5C_site_22552 DeepMRMD:1;iRNA_m5C:0.999536707190029 22553 chr7 142459771 142459771 1 + G A COAD 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG CATCATGTTAATCAAGCTCTCCTCACATGCAGTAATCAACG < 41bp 1 0.34864624101661 1 0.0774431228637695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459771 nonsynonymous SNV 0.000 2 27 hm5C_associated_SNPs_21541 0 0 0 0 0 Cytosol 1 0.5002316856834 1 0.999536628633201 hm5C_site_22553 DeepMRMD:1;iRNA_m5C:0.999536628633201 22554 chr7 142459771 142459771 1 + G A COAD 142459766 + 142459746 142459786 41 ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC ATCATGTTAATCAAGCTCTCCTCACATGCAGTAATCAACGC < 41bp 1 0.338129281893679 1 0.139787793159485 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459766 chr7:142459771 nonsynonymous SNV 0.000 2 26 hm5C_associated_SNPs_21542 0 0 0 0 0 Cytosol 1 0.500235602651136 1 0.999528794697727 hm5C_site_22554 DeepMRMD:1;iRNA_m5C:0.999528794697727 22555 chr7 142459771 142459771 1 + G A COAD 142459768 + 142459748 142459788 41 CATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCC CATGTTAATCAAGCTCTCCTCACATGCAGTAATCAACGCCC < 41bp 1 0.557663577914815 1 0.654588103294373 experiment 0.88467284417037 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459768 chr7:142459771 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_21543 0 0 0 0 0 Cytosol 1 0.500231643879943 0.690823793411254 0.999536712240113 hm5C_site_22555 DeepMRMD:0.690823793411254;iRNA_m5C:0.999536712240113 22556 chr7 142459771 142459771 1 + G A COAD 142459770 + 142459750 142459790 41 TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC TGTTAATCAAGCTCTCCTCACATGCAGTAATCAACGCCCGC < 41bp 1 0.341809852791267 1 0.159478604793549 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459770 chr7:142459771 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_21544 0 0 0 0 0 Cytosol 1 0.500231643931026 1 0.999536712137948 hm5C_site_22556 DeepMRMD:1;iRNA_m5C:0.999536712137948 22557 chr7 142459771 142459771 1 + G A COAD 142459781 + 142459761 142459801 41 CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCAT CTCTCCTCACATGCAGTAATCAACGCCCGCGTGTCCACCAT < 41bp 1 0.677075105105798 1 0.834550976753235 experiment 0.645849789788404 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459781 chr7:142459771 nonsynonymous SNV 0.000 2 11 hm5C_associated_SNPs_21546 0 0 0 0 0 Cytosol 1 0.500231643921093 0.33089804649353 0.999536712157815 hm5C_site_22557 DeepMRMD:0.33089804649353;iRNA_m5C:0.999536712157815 22558 chr7 142459771 142459771 1 + G A COAD 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACATGCAGTAATCAACGCCCGCGTGTCCACCATCTC < 41bp 1 0.588830385074415 1 0.236729592084885 experiment 0.822339229851169 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459771 nonsynonymous SNV 0.000 2 8 hm5C_associated_SNPs_21547 0 0 0 0 0 Cytosol 1 0.50023187250907 1 0.999536254981859 hm5C_site_22558 DeepMRMD:1;iRNA_m5C:0.999536254981859 22559 chr7 142459771 142459771 1 + G A COAD 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACATGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC < 41bp 1 0.506142102578297 1 0.0668552815914154 experiment 0.987715794843407 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459771 nonsynonymous SNV 0.000 2 6 hm5C_associated_SNPs_21548 0 0 0 0 0 Cytosol 1 0.500231690756784 1 0.999536618486432 hm5C_site_22559 DeepMRMD:1;iRNA_m5C:0.999536618486432 22560 chr7 142459771 142459771 1 + G A COAD 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACATGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT < 41bp 1 0.490011462331301 1 0.0826956927776337 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459771 nonsynonymous SNV 0.000 2 5 hm5C_associated_SNPs_21549 0 0 0 0 0 Cytosol 1 0.500231708940469 1 0.999536582119062 hm5C_site_22560 DeepMRMD:1;iRNA_m5C:0.999536582119062 22561 chr7 142459771 142459771 1 + G A COAD 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CATGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC < 41bp 1 0.423720703164104 1 0.11584597826004 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459771 nonsynonymous SNV 0.000 2 2 hm5C_associated_SNPs_21551 0 0 0 0 0 Cytosol 1 0.50023162960115 1 0.999536740797701 hm5C_site_22561 DeepMRMD:1;iRNA_m5C:0.999536740797701 22562 chr22 39125532 39125532 1 + G A COAD 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCGACAAAAAAGGGCCCCCTGACGAAACGAGACGA < 41bp 1 0.0363771630558176 1 0.130174160003662 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125532 synonymous SNV . 0 12 hm5C_associated_SNPs_21552 0 0 1 0 1 Ribosome 1 0.500231606632319 1 0.999536786735362 hm5C_site_22562 DeepMRMD:1;iRNA_m5C:0.999536786735362 22563 chr22 39125532 39125532 1 + G A COAD 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCGACAAAAAAGGGCCCCCTGACGAAACGAGACGAG < 41bp 1 0.0503607832783514 1 0.227067023515701 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125532 synonymous SNV . 0 11 hm5C_associated_SNPs_21553 0 0 1 0 1 Ribosome 1 0.500231643930057 1 0.999536712139886 hm5C_site_22563 DeepMRMD:1;iRNA_m5C:0.999536712139886 22564 chr22 39125532 39125532 1 + G A COAD 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCGACAAAAAAGGGCCCCCTGACGAAACGAGACGAGG < 41bp 1 0.0207330194252621 1 0.135247617959976 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125532 synonymous SNV . 0 10 hm5C_associated_SNPs_21554 0 0 1 0 1 Ribosome 1 0.500231643922186 1 0.999536712155628 hm5C_site_22564 DeepMRMD:1;iRNA_m5C:0.999536712155628 22565 chr22 39125532 39125532 1 + G A COAD 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCGACAAAAAAGGGCCCCCTGACGAAACGAGACGAGGG < 41bp 1 0.0648919872149775 1 0.199277728796005 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125532 synonymous SNV . 0 9 hm5C_associated_SNPs_21555 0 0 1 0 1 Ribosome 1 0.50023164391675 1 0.999536712166501 hm5C_site_22565 DeepMRMD:1;iRNA_m5C:0.999536712166501 22566 chr22 39125532 39125532 1 + G A COAD 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCGACAAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG < 41bp 1 0.146438003005078 1 0.358564674854279 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125532 synonymous SNV . 0 8 hm5C_associated_SNPs_21556 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_22566 DeepMRMD:1;iRNA_m5C:0.999536712157815 22567 chr5 139908590 139908590 1 + C A COAD 139908572 + 139908552 139908592 41 TACTTCTCAAGCACAGCTTTCTTCACAAAAGATGGAGTCTT TACTTCTCAAGCACAGCTTTCTTCACAAAAGATGGAGTATT < 41bp 1 0.170795121267156 1 0.141955614089966 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139908572 chr5:139908590 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_21557 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_22567 DeepMRMD:1;iRNA_m5C:0.999536712157818 22568 chr1 16255105 16255105 1 + G T COAD 16255107 + 16255087 16255127 41 CTATACAAAAAATGAAAAGACAGATAAAGAACGAACTTTTG CTATACAAAAAATGAAAATACAGATAAAGAACGAACTTTTG < 41bp 1 0.195989318347319 1 0.388528227806091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16255107 chr1:16255105 nonsynonymous SNV 0.999 3 19 hm5C_associated_SNPs_21558 0 0 1 0 0 Endoplasmic reticulum 1 0.50023158312011 1 0.99953683375978 hm5C_site_22568 DeepMRMD:1;iRNA_m5C:0.99953683375978 22569 chr1 16255105 16255105 1 + G T COAD 16255122 + 16255102 16255142 41 AAAGACAGATAAAGAACGAACTTTTGATCCGGAGAGAGTGG AAATACAGATAAAGAACGAACTTTTGATCCGGAGAGAGTGG < 41bp 1 0.0244053390570756 1 0.0598344206809998 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16255122 chr1:16255105 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_21559 0 0 1 0 0 Endoplasmic reticulum 1 0.5002330403966 1 0.9995339192068 hm5C_site_22569 DeepMRMD:1;iRNA_m5C:0.9995339192068 22570 chr2 136511744 136511744 1 + T C COAD 136511732 + 136511712 136511752 41 TTCATTAAACTGTACAGATCCTGTAGTGTGTGTTCCATCCA TTCATTAAACTGTACAGATCCTGTAGTGTGTGCTCCATCCA < 41bp 1 0.55190152932167 1 0.100958079099655 experiment 0.89619694135666 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136511732 chr2:136511744 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_21560 0 0 1 0 1 Endoplasmic reticulum 1 0.498998989340205 1 1 hm5C_site_22570 DeepMRMD:1;iRNA_m5C:1 22571 chr2 97007521 97007521 1 + A C COAD 97007527 + 97007507 97007547 41 CCCAGTCCTCGAAGACTTTCCTCAGAATGACGATGAGAAGG CCCAGTCCTCGAAGCCTTTCCTCAGAATGACGATGAGAAGG < 41bp 1 0.597947410156787 1 0.660038471221924 experiment 0.804105179686426 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPH ENSG00000121152 CDS Human protein_coding chr2:97007527 chr2:97007521 nonsynonymous SNV 0.999 1 15 hm5C_associated_SNPs_21561 0 0 1 0 1 Cytosol 1 0.500231643921122 0.679923057556152 0.999536712157757 hm5C_site_22571 DeepMRMD:0.679923057556152;iRNA_m5C:0.999536712157757 22572 chr13 33349185 33349185 1 + C T COAD 33349182 + 33349162 33349202 41 GGCGAAGTGCTAAAAGGGAACGGCGATGAACAAATGTAATT GGCGAAGTGCTAAAAGGGAACGGTGATGAACAAATGTAATT < 41bp 1 0.273121611548839 1 0.386828541755676 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDS5B ENSG00000083642 CDS Human protein_coding chr13:33349182 chr13:33349185 stopgain 0.994 0 24 hm5C_associated_SNPs_21562 0 0 0 0 1 chromatin 1 0.50023164392112 1 0.999536712157759 hm5C_site_22572 DeepMRMD:1;iRNA_m5C:0.999536712157759 22573 chr12 13232899 13232899 1 + C T COAD 13232896 + 13232876 13232916 41 CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTAGG CCAAAATTGGCCGTGGGGAGCTGTGAAGATTTCTCTCTAGG < 41bp 1 0.314202467918896 1 0.110538274049759 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232896 chr12:13232899 stopgain 1.000 0 24 hm5C_associated_SNPs_21563 0 0 1 1 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22573 DeepMRMD:1;iRNA_m5C:0.999536712157815 22574 chr6 149730820 149730820 1 + C T COAD 149730822 + 149730802 149730842 41 AACCATCCAGCCTTAATTCGCTGTGAACAGTGTGAGATGCC AACCATCCAGCCTTAATTTGCTGTGAACAGTGTGAGATGCC < 41bp 1 0.369157259892381 1 0.291173219680786 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TAB2 ENSG00000055208 CDS Human protein_coding chr6:149730822 chr6:149730820 nonsynonymous SNV 0.999 4 19 hm5C_associated_SNPs_21564 0 0 1 1 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22574 DeepMRMD:1;iRNA_m5C:0.999536712157815 22575 chr1 100480953 100480953 1 + A G COAD 100480954 + 100480934 100480974 41 TCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTC TCAGGGATATAACCGACTGGCCTGGATAGTAGTTGTTCTTC < 41bp 1 0.233606102241822 1 0.0483535528182983 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC35A3 ENSG00000117620 CDS Human protein_coding chr1:100480954 chr1:100480953 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_21565 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921186 1 0.999536712157629 hm5C_site_22575 DeepMRMD:1;iRNA_m5C:0.999536712157629 22576 chr9 132630298 132630298 1 + C T COAD 132630317 + 132630297 132630337 41 TCCTTCGCTGCCTGATGGACCAGCTGCACGAGGAGCTCAAG TTCTTCGCTGCCTGATGGACCAGCTGCACGAGGAGCTCAAG < 41bp 1 0.373384221366782 1 0.548511803150177 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132630317 chr9:132630298 synonymous SNV . 0 2 hm5C_associated_SNPs_21566 0 0 1 0 1 chromatin 1 0.500231643921092 0.902976393699646 0.999536712157815 hm5C_site_22576 DeepMRMD:0.902976393699646;iRNA_m5C:0.999536712157815 22577 chr1 35879610 35879610 1 + C A COAD 35879615 + 35879595 35879635 41 TAGATAACATTTTTACTGAGCCCTATTCCAGATTTATGATT TAGATAACATTTTTAATGAGCCCTATTCCAGATTTATGATT < 41bp 1 0.0857613876704323 1 0.0244598686695099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35879615 chr1:35879610 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_21568 0 0 1 0 2 Cytosol 1 0.500231643921126 1 0.999536712157749 hm5C_site_22577 DeepMRMD:1;iRNA_m5C:0.999536712157749 22578 chr1 35879610 35879610 1 + C A COAD 35879623 + 35879603 35879643 41 ATTTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTAC ATTTTTAATGAGCCCTATTCCAGATTTATGATTGAACTTAC < 41bp 1 0.377902347243603 1 0.531129539012909 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35879623 chr1:35879610 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_21569 0 0 1 0 2 Cytosol 1 0.500231643911775 0.937740921974182 0.99953671217645 hm5C_site_22578 DeepMRMD:0.937740921974182;iRNA_m5C:0.99953671217645 22579 chr3 123348391 123348391 1 + C T COAD 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATCGTCGGAGATCTCATCGAATGCCTCGTTGTCGAAGT < 41bp 1 0.550623735305411 1 0.477219641208649 experiment 0.898752529389178 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348391 nonsynonymous SNV 0.953 3 33 hm5C_associated_SNPs_21570 0 0 0 0 1 Cytosol 1 0.500262435070675 1 0.999475129858649 hm5C_site_22579 DeepMRMD:1;iRNA_m5C:0.999475129858649 22580 chr2 220346370 220346370 1 + G A COAD 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACCTACCACAGAAGAGACCCTAG < 41bp 1 0.0230368045249359 1 0.0872533023357391 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346370 nonsynonymous SNV 0.873 0 26 hm5C_associated_SNPs_21571 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22580 DeepMRMD:1;iRNA_m5C:0.999536712157815 22581 chr7 157000225 157000225 1 + G A COAD 157000240 + 157000220 157000260 41 ATAACGAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT ATAACAAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT < 41bp 1 0.0411053864421985 1 0.155094742774963 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157000240 chr7:157000225 nonsynonymous SNV 0.890 4 6 hm5C_associated_SNPs_21572 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22581 DeepMRMD:1;iRNA_m5C:0.999536712157815 22582 chr5 15937016 15937016 1 + G T COAD 15937013 + 15936993 15937033 41 CACGGTGTGGAGTACCTCGCCAAGAACTGCACCAAACTCAA CACGGTGTGGAGTACCTCGCCAATAACTGCACCAAACTCAA < 41bp 1 0.237167761749772 1 0.243918061256409 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXL7 ENSG00000183580 CDS Human protein_coding chr5:15937013 chr5:15937016 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_21573 0 0 0 0 0 exosome 1 0.500231644025481 1 0.999536711949038 hm5C_site_22582 DeepMRMD:1;iRNA_m5C:0.999536711949038 22583 chr11 65418133 65418133 1 + C T COAD 65418138 + 65418118 65418158 41 GAGAGTGCAGCCACACGCCTCCTCCTGGCCTCCAAGCAGCT GAGAGTGCAGCCACATGCCTCCTCCTGGCCTCCAAGCAGCT < 41bp 1 0.017562042734096 1 0.11321234703064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65418138 chr11:65418133 nonsynonymous SNV 0.961 4 16 hm5C_associated_SNPs_21574 0 0 0 0 1 Ribosome 1 0.500231643921025 1 0.99953671215795 hm5C_site_22583 DeepMRMD:1;iRNA_m5C:0.99953671215795 22584 chr11 65418133 65418133 1 + C T COAD 65418139 + 65418119 65418159 41 AGAGTGCAGCCACACGCCTCCTCCTGGCCTCCAAGCAGCTG AGAGTGCAGCCACATGCCTCCTCCTGGCCTCCAAGCAGCTG < 41bp 1 0.256587386408365 1 0.11897549033165 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65418139 chr11:65418133 nonsynonymous SNV 0.961 4 15 hm5C_associated_SNPs_21575 0 0 0 0 1 Ribosome 1 0.500230540723343 1 0.999538918553313 hm5C_site_22584 DeepMRMD:1;iRNA_m5C:0.999538918553313 22585 chr12 53454467 53454467 1 + G A COAD 53454477 + 53454457 53454497 41 AGCACCCGGCGACAGGACACCAGGTCCCCCACCTCAGCGCC AGCACCCGGCAACAGGACACCAGGTCCCCCACCTCAGCGCC < 41bp 1 0.548334470188495 1 0.753087222576141 experiment 0.90333105962301 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNS2 ENSG00000111077 CDS Human protein_coding chr12:53454477 chr12:53454467 nonsynonymous SNV 0.960 1 11 hm5C_associated_SNPs_21576 0 0 0 0 1 cytosol 1 0.500231643917161 0.493825554847718 0.999536712165679 hm5C_site_22585 DeepMRMD:0.493825554847718;iRNA_m5C:0.999536712165679 22586 chr19 4475344 4475344 1 + G A COAD 4475343 + 4475323 4475363 41 ATCTTTTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTC ATCTTTTTCTTTGGCACACACAAAACGTAAGTGTCCCCTTC < 41bp 1 0.480809858789227 1 0.384396404027939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475343 chr19:4475344 nonsynonymous SNV 0.986 3 22 hm5C_associated_SNPs_21577 0 0 1 0 2 unknown 1 0.500231643922323 1 0.999536712155353 hm5C_site_22586 DeepMRMD:1;iRNA_m5C:0.999536712155353 22587 chr19 4475344 4475344 1 + G A COAD 4475348 + 4475328 4475368 41 TTTCTTTGGCACACACGAAACGTAAGTGTCCCCTTCTGGGG TTTCTTTGGCACACACAAAACGTAAGTGTCCCCTTCTGGGG < 41bp 1 0.49662579349439 1 0.179060399532318 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475348 chr19:4475344 nonsynonymous SNV 0.986 3 17 hm5C_associated_SNPs_21578 0 0 1 0 2 unknown 1 0.500231643920327 1 0.999536712159347 hm5C_site_22587 DeepMRMD:1;iRNA_m5C:0.999536712159347 22588 chr12 62938732 62938732 1 + T C COAD 62938730 + 62938710 62938750 41 ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGGAT ATGGGGAGCAGAAGCTTTAACTCCTCTTATTAAAGCAGGAT < 41bp 1 0.418214214331502 1 0.480733633041382 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62938730 chr12:62938732 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_21580 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22588 DeepMRMD:1;iRNA_m5C:0.999536712157815 22589 chr10 114918433 114918433 1 + C T COAD 114918428 + 114918408 114918448 41 TTTGTTCTTTTTTTTCAGAACACAGCGAATGTTTCCTAAAT TTTGTTCTTTTTTTTCAGAACACAGTGAATGTTTCCTAAAT < 41bp 1 0.331625231175118 1 0.167408108711243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114918428 chr10:114918433 synonymous SNV . 0 26 hm5C_associated_SNPs_21581 0 0 1 0 2 Nucleus 1 0.500229307793061 1 0.999541384413878 hm5C_site_22589 DeepMRMD:1;iRNA_m5C:0.999541384413878 22590 chr5 169018104 169018104 1 + G A COAD 169018123 + 169018103 169018143 41 CGAATGTTAGAAAGTTTGAGCTGCGAATGTGAAGCTATTAA CAAATGTTAGAAAGTTTGAGCTGCGAATGTGAAGCTATTAA < 41bp 1 0.391981409342244 1 0.147227019071579 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169018123 chr5:169018104 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_21582 0 0 1 0 0 chromatin 1 0.500242911475123 1 0.999514177049753 hm5C_site_22590 DeepMRMD:1;iRNA_m5C:0.999514177049753 22591 chr5 56526785 56526785 1 + G A COAD 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTATTGGGCATCCTAATGGAGGTAAAATT < 41bp 1 0.173895391090825 1 0.0663838982582092 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526785 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_21583 0 0 1 1 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_22591 DeepMRMD:1;iRNA_m5C:0.999536712157815 22592 chr11 119050800 119050800 1 + C T COAD 119050815 + 119050795 119050835 41 CGCTTCTCCGCTGAGGTGCTCAGCTCCCTGCGTCAGCTCAA CGCTTTTCCGCTGAGGTGCTCAGCTCCCTGCGTCAGCTCAA < 41bp 1 0.328518780608424 1 0.290104568004608 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119050815 chr11:119050800 synonymous SNV . 0 6 hm5C_associated_SNPs_21584 0 0 0 0 0 exosome 1 0.500231643634122 1 0.999536712731757 hm5C_site_22592 DeepMRMD:1;iRNA_m5C:0.999536712731757 22593 chr10 5963497 5963497 1 + G A COAD 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CGGGTGACGAAAGGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.0854712638380611 1 0.229276478290558 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963497 nonsynonymous SNV 0.775 1 10 hm5C_associated_SNPs_21585 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22593 DeepMRMD:1;iRNA_m5C:0.999536712157815 22594 chr10 5963497 5963497 1 + G A COAD 5963513 + 5963493 5963533 41 GACGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG GACGAAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG < 41bp 1 0.643172066618687 1 0.819425642490387 experiment 0.713655866762625 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963513 chr10:5963497 nonsynonymous SNV 0.775 1 5 hm5C_associated_SNPs_21586 0 0 1 0 2 Ribosome 1 0.500231643921092 0.361148715019226 0.999536712157815 hm5C_site_22594 DeepMRMD:0.361148715019226;iRNA_m5C:0.999536712157815 22595 chr19 44515258 44515258 1 + G A COAD 44515278 + 44515258 44515298 41 GAATCCACAGTGGAGAAAAACCATACAGATGTGAGGAGTGT AAATCCACAGTGGAGAAAAACCATACAGATGTGAGGAGTGT < 41bp 1 0.259726021779472 1 0.0492107272148132 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF230 ENSG00000159882 CDS Human protein_coding chr19:44515278 chr19:44515258 nonsynonymous SNV 0.001 2 1 hm5C_associated_SNPs_21587 0 0 1 0 0 cytosol 1 0.500231644905816 1 0.999536710188369 hm5C_site_22595 DeepMRMD:1;iRNA_m5C:0.999536710188369 22596 chr1 173454561 173454561 1 + A G COAD 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGGTA < 41bp 1 0.0809931435682452 1 0.019411712884903 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454561 nonsynonymous SNV 0.787 3 39 hm5C_associated_SNPs_21588 0 0 1 0 2 Ribosome 1 0.500231643964434 1 0.999536712071131 hm5C_site_22596 DeepMRMD:1;iRNA_m5C:0.999536712071131 22597 chr2 235951000 235951000 1 + C T COAD 235950995 + 235950975 235951015 41 TGCAGCTGTGGGGGAAGCACCAGTTCGTTTTGTCCAGGCCC TGCAGCTGTGGGGGAAGCACCAGTTTGTTTTGTCCAGGCCC < 41bp 1 0.291372505229443 1 0.710992038249969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235950995 chr2:235951000 synonymous SNV . 0 26 hm5C_associated_SNPs_21589 0 0 1 0 0 cytosol 1 0.500231643921092 0.578015923500062 0.999536712157815 hm5C_site_22597 DeepMRMD:0.578015923500062;iRNA_m5C:0.999536712157815 22598 chr8 23147914 23147914 1 + G A COAD 23147913 + 23147893 23147933 41 GTGGCAGAGGAGGAAGAGGACGAAGAGGAGGTGGAAGAGGA GTGGCAGAGGAGGAAGAGGACAAAGAGGAGGTGGAAGAGGA < 41bp 1 0.574448707368536 1 0.560296058654785 experiment 0.851102585262928 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23147913 chr8:23147914 nonsynonymous SNV 0.021 0 22 hm5C_associated_SNPs_21590 0 0 1 0 1 Cytosol 1 0.500231643921092 0.87940788269043 0.999536712157815 hm5C_site_22598 DeepMRMD:0.87940788269043;iRNA_m5C:0.999536712157815 22599 chrX 7171331 7171331 1 + G A COAD 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACAA < 41bp 1 0.304876698537281 1 0.0543593764305115 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171331 nonsynonymous SNV 0.990 5 40 hm5C_associated_SNPs_21591 0 0 0 0 1 Cytosol 1 0.500231644693249 1 0.999536710613502 hm5C_site_22599 DeepMRMD:1;iRNA_m5C:0.999536710613502 22600 chr7 73604164 73604164 1 + C T COAD 73604152 + 73604132 73604172 41 TATTTTCCCTTTATCATTAGCTGTTGGGCGATCGGTCACTT TATTTTCCCTTTATCATTAGCTGTTGGGCGATTGGTCACTT < 41bp 1 0.213310766100287 1 0.0206409990787506 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73604152 chr7:73604164 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_21592 0 0 1 0 2 Ribosome 1 0.500231643920357 1 0.999536712159287 hm5C_site_22600 DeepMRMD:1;iRNA_m5C:0.999536712159287 22601 chr19 5144306 5144306 1 + G T COAD 5144297 + 5144277 5144317 41 GTGTCCCTAGGCCAGGTGGTCATCACCAAGAACCGCAACGG GTGTCCCTAGGCCAGGTGGTCATCACCAATAACCGCAACGG < 41bp 1 0.338057643397298 1 0.170823186635971 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5144297 chr19:5144306 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_21593 0 0 1 0 1 Cytosol 1 0.500231643921135 1 0.999536712157731 hm5C_site_22601 DeepMRMD:1;iRNA_m5C:0.999536712157731 22602 chr14 56763463 56763463 1 + G A COAD 56763475 + 56763455 56763495 41 CGCCGCCCGGCCTCAGTGTCCTGTGGGGCTCAACACCCTGG CGCCGCCCAGCCTCAGTGTCCTGTGGGGCTCAACACCCTGG < 41bp 1 0.455132437366824 1 0.0907205045223236 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PELI2 ENSG00000139946 CDS Human protein_coding chr14:56763475 chr14:56763463 nonsynonymous SNV 0.104 4 9 hm5C_associated_SNPs_21594 0 0 0 0 0 nucleus 1 0.500231643921113 1 0.999536712157773 hm5C_site_22602 DeepMRMD:1;iRNA_m5C:0.999536712157773 22603 chr15 64410415 64410415 1 + C A COAD 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTCTCTTCCTCCTCAGGAAGCCACAAATTATTCGAAGCCCC < 41bp 1 0.229509661369647 1 0.254152685403824 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410415 nonsynonymous SNV 0.955 0 30 hm5C_associated_SNPs_21595 0 0 1 0 3 Ribosome 1 0.500231643852392 1 0.999536712295216 hm5C_site_22603 DeepMRMD:1;iRNA_m5C:0.999536712295216 22604 chr15 64410415 64410415 1 + C A COAD 64410409 + 64410389 64410429 41 TCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCCAGC TCTTCCTCCTCAGGAAGCCACAAATTATTCGAAGCCCCAGC < 41bp 1 0.20053575623685 1 0.242576569318771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410409 chr15:64410415 nonsynonymous SNV 0.955 0 27 hm5C_associated_SNPs_21596 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22604 DeepMRMD:1;iRNA_m5C:0.999536712157815 22605 chr14 74424903 74424903 1 + C T COAD 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC TCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC < 41bp 1 0.408302598707614 1 0.188233017921448 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424903 nonsynonymous SNV 0.990 0 1 hm5C_associated_SNPs_21597 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22605 DeepMRMD:1;iRNA_m5C:0.999536712157815 22606 chr7 92020537 92020537 1 + C T COAD 92020521 + 92020501 92020541 41 GAAGACCTTGCCCAGAAAGTCAATAGGCCTTACCTTCGCAC GAAGACCTTGCCCAGAAAGTCAATAGGCCTTACCTTTGCAC < 41bp 1 0.509112527487692 1 0.167878895998001 experiment 0.981774945024615 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92020521 chr7:92020537 nonsynonymous SNV 0.996 1 37 hm5C_associated_SNPs_21598 0 0 0 0 1 Cytosol 1 0.500231643921019 1 0.999536712157961 hm5C_site_22606 DeepMRMD:1;iRNA_m5C:0.999536712157961 22607 chr2 54858671 54858671 1 + A C COAD 54858664 + 54858644 54858684 41 CTCCACAAGATGTGGGAGAACAGACAAAATCTCCTATCCCA CTCCACAAGATGTGGGAGAACAGACAACATCTCCTATCCCA < 41bp 1 0.300117871075326 1 0.474072575569153 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858664 chr2:54858671 nonsynonymous SNV 0.787 0 28 hm5C_associated_SNPs_21599 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22607 DeepMRMD:1;iRNA_m5C:0.999536712157815 22608 chr20 42089365 42089365 1 + C T COAD 42089358 + 42089338 42089378 41 TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCG TCCAGTTCCAGGTCGCGGAGCAAAGGTTGATCACGTTCTCG < 41bp 1 0.45328343861816 1 0.383377909660339 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089358 chr20:42089365 stopgain 1.000 1 28 hm5C_associated_SNPs_21600 0 0 1 0 1 Nucleus 1 0.500231642652404 1 0.999536714695191 hm5C_site_22608 DeepMRMD:1;iRNA_m5C:0.999536714695191 22609 chr9 117053105 117053105 1 + G A COAD 117053104 + 117053084 117053124 41 TAACAGGGGGAGCAGGGAGACGATGGGGACCCTGGCCCCAT TAACAGGGGGAGCAGGGAGACAATGGGGACCCTGGCCCCAT < 41bp 1 0.333354340578629 1 0.691415011882782 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117053104 chr9:117053105 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_21601 0 0 1 0 2 Nucleus 1 0.500231643921092 0.617169976234436 0.999536712157815 hm5C_site_22609 DeepMRMD:0.617169976234436;iRNA_m5C:0.999536712157815 22610 chr10 112270105 112270105 1 + C T COAD 112270091 + 112270071 112270111 41 GACATGCAGGGTGCCTACTGCACATTCCCTGCCTCGGTGCT GACATGCAGGGTGCCTACTGCACATTCCCTGCCTTGGTGCT < 41bp 1 0.223009977994121 1 0.170750051736832 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DUSP5 ENSG00000138166 CDS Human protein_coding chr10:112270091 chr10:112270105 nonsynonymous SNV 0.996 4 35 hm5C_associated_SNPs_21602 0 0 1 0 0 Cytosol 1 0.50022612279884 1 0.999547754402319 hm5C_site_22610 DeepMRMD:1;iRNA_m5C:0.999547754402319 22611 chr12 104332151 104332151 1 + G A COAD 104332136 + 104332116 104332156 41 AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAAGAAGCA AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAAAAAGCA < 41bp 1 0.101965929190679 1 0.14827099442482 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104332136 chr12:104332151 nonsynonymous SNV 0.996 1 36 hm5C_associated_SNPs_21603 0 0 1 0 3 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22611 DeepMRMD:1;iRNA_m5C:0.999536712157815 22612 chr4 8284229 8284229 1 + G A COAD 8284228 + 8284208 8284248 41 GCTGACGTGGTGGAGAAGATCGCACCAGCCGTGGTCCACAT GCTGACGTGGTGGAGAAGATCACACCAGCCGTGGTCCACAT < 41bp 1 0.559185285204584 1 0.137204438447952 experiment 0.881629429590832 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8284228 chr4:8284229 nonsynonymous SNV 0.878 5 22 hm5C_associated_SNPs_21604 0 0 0 0 2 exosome 1 0.500299558984835 1 0.99940088203033 hm5C_site_22612 DeepMRMD:1;iRNA_m5C:0.99940088203033 22613 chr19 10403702 10403702 1 + C T COAD 10403699 + 10403679 10403719 41 CCCCGGCTAGACGATTCGGACTGCCCCAGGAGTTGGACGTG CCCCGGCTAGACGATTCGGACTGTCCCAGGAGTTGGACGTG < 41bp 1 0.133522716038837 1 0.0788630843162537 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10403699 chr19:10403702 synonymous SNV . 0 24 hm5C_associated_SNPs_21605 0 0 1 0 1 Endoplasmic reticulum 1 0.500231731494547 1 0.999536537010906 hm5C_site_22613 DeepMRMD:1;iRNA_m5C:0.999536537010906 22614 chr16 88643534 88643534 1 + G A COAD 88643520 + 88643500 88643540 41 GTATTCTCTCTTTTGCAGAACCGTGGGTACCGATGGATGTG GTATTCTCTCTTTTGCAGAACCGTGGGTACCGATAGATGTG < 41bp 1 0.21234396149141 1 0.109518229961395 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H18 ENSG00000158545 CDS Human protein_coding chr16:88643520 chr16:88643534 nonsynonymous SNV 0.990 2 35 hm5C_associated_SNPs_21606 0 0 1 0 0 chromatin 1 0.500231643921975 1 0.999536712156049 hm5C_site_22614 DeepMRMD:1;iRNA_m5C:0.999536712156049 22615 chr16 88643534 88643534 1 + G A COAD 88643521 + 88643501 88643541 41 TATTCTCTCTTTTGCAGAACCGTGGGTACCGATGGATGTGG TATTCTCTCTTTTGCAGAACCGTGGGTACCGATAGATGTGG < 41bp 1 0.551928489070201 1 0.405803978443146 experiment 0.896143021859597 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H18 ENSG00000158545 CDS Human protein_coding chr16:88643521 chr16:88643534 nonsynonymous SNV 0.990 2 34 hm5C_associated_SNPs_21607 0 0 1 0 0 chromatin 1 0.50022861313348 1 0.999542773733041 hm5C_site_22615 DeepMRMD:1;iRNA_m5C:0.999542773733041 22616 chr18 33780032 33780032 1 + C T COAD 33780019 + 33779999 33780039 41 AGGTCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGG AGGTCAAGTCTGGGCGGTTGCACCCTGTGAGCATGCCTGGG < 41bp 1 0.65911322469168 1 0.0671519935131073 experiment 0.68177355061664 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780019 chr18:33780032 nonsynonymous SNV 0.000 1 34 hm5C_associated_SNPs_21608 0 0 1 0 0 Ribosome 1 0.500231242520041 1 0.999537514959918 hm5C_site_22616 DeepMRMD:1;iRNA_m5C:0.999537514959918 22617 chr18 33780032 33780032 1 + C T COAD 33780021 + 33780001 33780041 41 GTCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAA GTCAAGTCTGGGCGGTTGCACCCTGTGAGCATGCCTGGGAA < 41bp 1 0.456301938276154 1 0.0601776242256165 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780021 chr18:33780032 nonsynonymous SNV 0.000 1 32 hm5C_associated_SNPs_21609 0 0 1 0 0 Ribosome 1 0.500231643920109 1 0.999536712159782 hm5C_site_22617 DeepMRMD:1;iRNA_m5C:0.999536712159782 22618 chr18 33780032 33780032 1 + C T COAD 33780022 + 33780002 33780042 41 TCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAAG TCAAGTCTGGGCGGTTGCACCCTGTGAGCATGCCTGGGAAG < 41bp 1 0.361295966908658 1 0.307314455509186 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780022 chr18:33780032 nonsynonymous SNV 0.000 1 31 hm5C_associated_SNPs_21610 0 0 1 0 0 Ribosome 1 0.500231643783529 1 0.999536712432941 hm5C_site_22618 DeepMRMD:1;iRNA_m5C:0.999536712432941 22619 chr18 33780032 33780032 1 + C T COAD 33780023 + 33780003 33780043 41 CAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAAGT CAAGTCTGGGCGGTTGCACCCTGTGAGCATGCCTGGGAAGT < 41bp 1 0.552068638452905 1 0.0797742009162903 experiment 0.89586272309419 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780023 chr18:33780032 nonsynonymous SNV 0.000 1 30 hm5C_associated_SNPs_21611 0 0 1 0 0 Ribosome 1 0.500231643920529 1 0.999536712158942 hm5C_site_22619 DeepMRMD:1;iRNA_m5C:0.999536712158942 22620 chr11 118344458 118344458 1 + C T COAD 118344450 + 118344430 118344470 41 CAAGGCCCCCGAGGAGCTGTCCAAAGATCGAGATGCTGACA CAAGGCCCCCGAGGAGCTGTCCAAAGATTGAGATGCTGACA < 41bp 1 0.1567093490501 1 0.159219413995743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118344450 chr11:118344458 stopgain 1.000 0 29 hm5C_associated_SNPs_21612 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22620 DeepMRMD:1;iRNA_m5C:0.999536712157815 22621 chr11 118344458 118344458 1 + C T COAD 118344469 + 118344449 118344489 41 TCCAAAGATCGAGATGCTGACAAGAGCGTGGAGAAGGACAA TCCAAAGATTGAGATGCTGACAAGAGCGTGGAGAAGGACAA < 41bp 1 0.528883768229084 1 0.522908389568329 experiment 0.942232463541832 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118344469 chr11:118344458 stopgain 1.000 0 10 hm5C_associated_SNPs_21613 0 0 1 0 0 Cytosol 1 0.500231643921092 0.954183220863342 0.999536712157815 hm5C_site_22621 DeepMRMD:0.954183220863342;iRNA_m5C:0.999536712157815 22622 chr11 118344458 118344458 1 + C T COAD 118344475 + 118344455 118344495 41 GATCGAGATGCTGACAAGAGCGTGGAGAAGGACAAGAGTAG GATTGAGATGCTGACAAGAGCGTGGAGAAGGACAAGAGTAG < 41bp 1 0.259092461233583 1 0.531518220901489 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118344475 chr11:118344458 stopgain 1.000 0 4 hm5C_associated_SNPs_21614 0 0 1 0 0 Cytosol 1 0.500231643921092 0.936963558197022 0.999536712157815 hm5C_site_22622 DeepMRMD:0.936963558197022;iRNA_m5C:0.999536712157815 22623 chr11 2797241 2797241 1 + G T COAD 2797253 + 2797233 2797273 41 ACTCGCAGGGCCACCTCAACCTCATGGTGCGCATCAAGGAG ACTCGCAGTGCCACCTCAACCTCATGGTGCGCATCAAGGAG < 41bp 1 0.44964403020454 1 0.369449317455292 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2797253 chr11:2797241 nonsynonymous SNV 1.000 5 9 hm5C_associated_SNPs_21615 0 0 0 0 2 Nucleus 1 0.500231643691166 1 0.999536712617668 hm5C_site_22623 DeepMRMD:1;iRNA_m5C:0.999536712617668 22624 chr2 11922443 11922443 1 + G A COAD 11922463 + 11922443 11922483 41 GCCAACTCTGGTCGGTGGGGCACTTTTGGACCAGAACAAGC ACCAACTCTGGTCGGTGGGGCACTTTTGGACCAGAACAAGC < 41bp 1 0.101514833700952 1 0.168658405542374 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPIN1 ENSG00000134324 CDS Human protein_coding chr2:11922463 chr2:11922443 synonymous SNV . 0 1 hm5C_associated_SNPs_21616 0 0 1 0 0 Cytosol 1 0.500231643545506 1 0.999536712908988 hm5C_site_22624 DeepMRMD:1;iRNA_m5C:0.999536712908988 22625 chr10 91177163 91177163 1 + C T COAD 91177165 + 91177145 91177185 41 AAAAGGCCAAAATAAAGACGCCCTTGAGTGCTTGGAACAAG AAAAGGCCAAAATAAAGATGCCCTTGAGTGCTTGGAACAAG < 41bp 1 0.0778548851698659 1 0.0457316339015961 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFIT5 ENSG00000152778 CDS Human protein_coding chr10:91177165 chr10:91177163 synonymous SNV . 0 19 hm5C_associated_SNPs_21617 0 0 1 0 0 exosome 1 0.500231643917161 1 0.999536712165678 hm5C_site_22625 DeepMRMD:1;iRNA_m5C:0.999536712165678 22626 chr16 70163012 70163012 1 + T C COAD 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTTGCCCTGGCAAGTGCCGCCTCCCAAAATGGTGAGCAGGT < 41bp 1 0.128004079604861 1 0.349769651889801 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70163012 synonymous SNV . 0 18 hm5C_associated_SNPs_21618 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_22626 DeepMRMD:1;iRNA_m5C:0.999536712157816 22627 chr15 72855816 72855816 1 + C T COAD 72855834 + 72855814 72855854 41 TTCGCTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT TTTGCTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT < 41bp 1 0.0770976338492111 1 0.15314045548439 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72855834 chr15:72855816 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_21619 0 0 1 0 2 Cytosol 1 0.500231643921068 1 0.999536712157864 hm5C_site_22627 DeepMRMD:1;iRNA_m5C:0.999536712157864 22628 chr16 27642469 27642469 1 + C T COAD 27642481 + 27642461 27642501 41 TCCAGCGCCGAGGATGGCACCAGGTCTGGAGACTGTGGCCC TCCAGCGCTGAGGATGGCACCAGGTCTGGAGACTGTGGCCC < 41bp 1 0.605877694950461 1 0.405539870262146 experiment 0.788244610099078 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27642481 chr16:27642469 stopgain 0.999 1 9 hm5C_associated_SNPs_21620 0 0 1 0 2 Nucleus 1 0.500231505773954 1 0.999536988452092 hm5C_site_22628 DeepMRMD:1;iRNA_m5C:0.999536988452092 22629 chr18 8638248 8638248 1 + C T COAD 8638254 + 8638234 8638274 41 CCAAGACCACATGTCCGATGCTGTTGATTTCCTACTTTGGA CCAAGACCACATGTTCGATGCTGTTGATTTCCTACTTTGGA < 41bp 1 0.187639003135528 1 0.100950390100479 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB12 ENSG00000206418 CDS Human protein_coding chr18:8638254 chr18:8638248 synonymous SNV . 0 15 hm5C_associated_SNPs_21622 0 0 1 0 0 Ribosome 1 0.500233575322301 1 0.999532849355398 hm5C_site_22629 DeepMRMD:1;iRNA_m5C:0.999532849355398 22630 chr16 22337251 22337251 1 + C T COAD 22337234 + 22337214 22337254 41 GTGTGCGGATCAAGGAGGAGCCCGTGAGCGAGGAGGGCGAG GTGTGCGGATCAAGGAGGAGCCCGTGAGCGAGGAGGGTGAG < 41bp 1 0.466359756989025 1 0.168596565723419 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337234 chr16:22337251 synonymous SNV . 0 38 hm5C_associated_SNPs_21623 0 0 1 0 0 Ribosome 1 0.50023668570895 1 0.999526628582099 hm5C_site_22630 DeepMRMD:1;iRNA_m5C:0.999526628582099 22631 chr16 22337251 22337251 1 + C T COAD 22337235 + 22337215 22337255 41 TGTGCGGATCAAGGAGGAGCCCGTGAGCGAGGAGGGCGAGG TGTGCGGATCAAGGAGGAGCCCGTGAGCGAGGAGGGTGAGG < 41bp 1 0.291429428921301 1 0.442187309265137 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337235 chr16:22337251 synonymous SNV . 0 37 hm5C_associated_SNPs_21624 0 0 1 0 0 Ribosome 1 0.500230911341907 1 0.999538177316186 hm5C_site_22631 DeepMRMD:1;iRNA_m5C:0.999538177316186 22632 chr21 37785221 37785221 1 + C T COAD 37785214 + 37785194 37785234 41 TGCCTTCCTGGCCATTTCTTCCACGGACGGTTACTGCTCAT TGCCTTCCTGGCCATTTCTTCCACGGATGGTTACTGCTCAT < 41bp 1 0.340324242988301 1 0.209428578615189 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37785214 chr21:37785221 synonymous SNV . 0 28 hm5C_associated_SNPs_21625 0 0 1 0 1 Ribosome 1 0.500231643510663 1 0.999536712978673 hm5C_site_22632 DeepMRMD:1;iRNA_m5C:0.999536712978673 22633 chr13 58206826 58206826 1 + C T COAD 58206825 + 58206805 58206845 41 CTCGACTGCAGCCTGGGCTTCCGCCTGCAGAGCGCGGCGGC CTCGACTGCAGCCTGGGCTTCTGCCTGCAGAGCGCGGCGGC < 41bp 1 0.652919395284344 1 0.164058685302734 experiment 0.694161209431311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58206825 chr13:58206826 nonsynonymous SNV 0.846 0 22 hm5C_associated_SNPs_21626 0 0 0 0 0 exosome 1 0.50023164392061 1 0.999536712158781 hm5C_site_22633 DeepMRMD:1;iRNA_m5C:0.999536712158781 22634 chr9 137021685 137021685 1 + G C COAD 137021694 + 137021674 137021714 41 TTCAGACGAAAGAGATTGTACAGAAACTACAAGGCCACACA TTCAGACGAAACAGATTGTACAGAAACTACAAGGCCACACA < 41bp 1 0.62851266241138 1 0.380642056465149 experiment 0.74297467517724 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR5 ENSG00000196363 CDS Human protein_coding chr9:137021694 chr9:137021685 nonsynonymous SNV 0.990 1 12 hm5C_associated_SNPs_21627 0 0 1 0 2 Cytosol 1 0.500231643925154 1 0.999536712149691 hm5C_site_22634 DeepMRMD:1;iRNA_m5C:0.999536712149691 22635 chrX 2641394 2641394 1 + A G COAD 2641380 + 2641360 2641400 41 GGAGGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGA GGAGGCAGTGATGGTGGAGGCAGCCACAGGAAAGGAGGGGA < 41bp 1 0.400523658833123 1 0.706116080284119 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2641380 chrX:2641394 nonsynonymous SNV 0.052 0 35 hm5C_associated_SNPs_21629 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.587767839431762 0.999536712157815 hm5C_site_22635 DeepMRMD:0.587767839431762;iRNA_m5C:0.999536712157815 22636 chrX 2641394 2641394 1 + A G COAD 2641383 + 2641363 2641403 41 GGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGAAGA GGCAGTGATGGTGGAGGCAGCCACAGGAAAGGAGGGGAAGA < 41bp 1 0.325370565661545 1 0.432011872529984 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CD99 ENSG00000002586 CDS Human protein_coding chrX:2641383 chrX:2641394 nonsynonymous SNV 0.052 0 32 hm5C_associated_SNPs_21630 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644050369 1 0.999536711899263 hm5C_site_22636 DeepMRMD:1;iRNA_m5C:0.999536711899263 22637 chrX 2641394 2641394 1 + A G COAD 2641384 + 2641364 2641404 41 GCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGAAGAG GCAGTGATGGTGGAGGCAGCCACAGGAAAGGAGGGGAAGAG < 41bp 1 0.583363734286616 1 0.654635727405548 experiment 0.833272531426768 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CD99 ENSG00000002586 CDS Human protein_coding chrX:2641384 chrX:2641394 nonsynonymous SNV 0.052 0 31 hm5C_associated_SNPs_21631 0 0 1 0 1 Endoplasmic reticulum 1 0.500231665425819 0.690728545188904 0.999536669148361 hm5C_site_22637 DeepMRMD:0.690728545188904;iRNA_m5C:0.999536669148361 22638 chr14 105355856 105355856 1 + G A COAD 105355874 + 105355854 105355894 41 ACGAGGCGCCGGCAGCAGGGCTCGGATTACACGTCCACCTC ACAAGGCGCCGGCAGCAGGGCTCGGATTACACGTCCACCTC < 41bp 1 0.521066054240592 1 0.218214333057404 experiment 0.957867891518817 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105355874 chr14:105355856 synonymous SNV . 0 3 hm5C_associated_SNPs_21632 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22638 DeepMRMD:1;iRNA_m5C:0.999536712157815 22639 chr4 146463808 146463808 1 + A G COAD 146463820 + 146463800 146463840 41 TGGACACAAACATGATGGCGCCTCCCCTGCCCTCAGAAATC TGGACACAGACATGATGGCGCCTCCCCTGCCCTCAGAAATC < 41bp 1 0.0263546712195915 1 0.110284388065338 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463820 chr4:146463808 nonsynonymous SNV 0.998 2 9 hm5C_associated_SNPs_21633 0 0 0 0 2 Endoplasmic reticulum 1 0.500231717595309 1 0.999536564809383 hm5C_site_22639 DeepMRMD:1;iRNA_m5C:0.999536564809383 22640 chr9 106876984 106876984 1 + G C COAD 106876976 + 106876956 106876996 41 AACTTTTGTATTTCAGGGATCCAGAGAAGAACTGGAATAGA AACTTTTGTATTTCAGGGATCCAGAGAACAACTGGAATAGA < 41bp 1 0.289359479438838 1 0.372290909290314 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106876976 chr9:106876984 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_21634 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22640 DeepMRMD:1;iRNA_m5C:0.999536712157815 22641 chr5 86645041 86645041 1 + C G COAD 86645061 + 86645041 86645081 41 CTGCAGTTTTCTTGTGAGGCCCTCAGATAATACTCCTGGCG GTGCAGTTTTCTTGTGAGGCCCTCAGATAATACTCCTGGCG < 41bp 1 0.16189064021191 1 0.141083419322968 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86645061 chr5:86645041 synonymous SNV . 0 1 hm5C_associated_SNPs_21635 0 0 1 0 1 Nucleus 1 0.500231673259653 1 0.999536653480693 hm5C_site_22641 DeepMRMD:1;iRNA_m5C:0.999536653480693 22642 chr17 7836596 7836596 1 + G A COAD 7836604 + 7836584 7836624 41 CCGCCTCATGAAGGGTTAGACGGCTTCGCCCAAGAATTGAG CCGCCTCATGAAAGGTTAGACGGCTTCGCCCAAGAATTGAG < 41bp 1 0.46024179854714 1 0.243248581886292 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7836604 chr17:7836596 nonsynonymous SNV 0.003 0 13 hm5C_associated_SNPs_21636 0 0 1 0 1 Nucleus 1 0.500231644447222 1 0.999536711105556 hm5C_site_22642 DeepMRMD:1;iRNA_m5C:0.999536711105556 22643 chr7 44806254 44806254 1 + G T COAD 44806243 + 44806223 44806263 41 CATGTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACG CATGTCTGGAGCCGGGGAGGCCCCAGAACCATCTCTGGACG < 41bp 1 0.560589886493581 1 0.516435444355011 experiment 0.878820227012838 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806243 chr7:44806254 nonsynonymous SNV 0.880 0 32 hm5C_associated_SNPs_21637 0 0 1 0 1 Cytosol 1 0.50023163841564 0.967129111289978 0.99953672316872 hm5C_site_22643 DeepMRMD:0.967129111289978;iRNA_m5C:0.99953672316872 22644 chr7 44806254 44806254 1 + G T COAD 44806244 + 44806224 44806264 41 ATGTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGT ATGTCTGGAGCCGGGGAGGCCCCAGAACCATCTCTGGACGT < 41bp 1 0.329691780961648 1 0.243260115385056 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806244 chr7:44806254 nonsynonymous SNV 0.880 0 31 hm5C_associated_SNPs_21638 0 0 1 0 1 Cytosol 1 0.500231643921082 1 0.999536712157835 hm5C_site_22644 DeepMRMD:1;iRNA_m5C:0.999536712157835 22645 chr7 44806254 44806254 1 + G T COAD 44806245 + 44806225 44806265 41 TGTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGTG TGTCTGGAGCCGGGGAGGCCCCAGAACCATCTCTGGACGTG < 41bp 1 0.541042636199557 1 0.264454960823059 experiment 0.917914727600886 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806245 chr7:44806254 nonsynonymous SNV 0.880 0 30 hm5C_associated_SNPs_21639 0 0 1 0 1 Cytosol 1 0.500231646274426 1 0.999536707451148 hm5C_site_22645 DeepMRMD:1;iRNA_m5C:0.999536707451148 22646 chr9 33912043 33912043 1 + C A COAD 33912033 + 33912013 33912053 41 CCCAGCCAATGTCGATGCTTCAGTTATGTTCAGGAAATGGA CCCAGCCAATGTCGATGCTTCAGTTATGTTAAGGAAATGGA < 41bp 1 0.154003764227126 1 0.0804048478603363 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33912033 chr9:33912043 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_21641 0 0 1 0 2 Cytosol 1 0.500231658429151 1 0.999536683141699 hm5C_site_22646 DeepMRMD:1;iRNA_m5C:0.999536683141699 22647 chr19 50912817 50912817 1 + G A COAD 50912807 + 50912787 50912827 41 AGCTGGCCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTG AGCTGGCCAAGGAGACAGACCCCCTCCGGCACCAGGTCCTG < 41bp 1 0.188954749621026 1 0.0136010348796844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912807 chr19:50912817 nonsynonymous SNV 0.995 3 31 hm5C_associated_SNPs_21642 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22647 DeepMRMD:1;iRNA_m5C:0.999536712157815 22648 chr19 50912817 50912817 1 + G A COAD 50912813 + 50912793 50912833 41 CCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTGGATGGA CCAAGGAGACAGACCCCCTCCGGCACCAGGTCCTGGATGGA < 41bp 1 0.625312409902193 1 0.765428066253662 experiment 0.749375180195614 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912813 chr19:50912817 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_21643 0 0 1 0 1 Nucleus 1 0.500231643921092 0.469143867492676 0.999536712157815 hm5C_site_22648 DeepMRMD:0.469143867492676;iRNA_m5C:0.999536712157815 22649 chr16 85100869 85100869 1 + G A COAD 85100859 + 85100839 85100879 41 GAATGACATGGGCGAGTCGCCCTCGCACCCGTCCTGGGACC GAATGACATGGGCGAGTCGCCCTCGCACCCATCCTGGGACC < 41bp 1 0.136496040731056 1 0.101440042257309 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85100859 chr16:85100869 synonymous SNV . 0 31 hm5C_associated_SNPs_21645 0 0 0 0 0 Nucleus 1 0.500231477588328 1 0.999537044823345 hm5C_site_22649 DeepMRMD:1;iRNA_m5C:0.999537044823345 22650 chr1 45973939 45973939 1 + G A COAD 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATTGCTGACTACGAGGTGCACCCCAACCAACGCCCCAAG < 41bp 1 0.249062620120748 1 0.0347805619239807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973939 nonsynonymous SNV 0.973 5 31 hm5C_associated_SNPs_21646 0 0 1 0 2 Cytosol 1 0.500231643754047 1 0.999536712491906 hm5C_site_22650 DeepMRMD:1;iRNA_m5C:0.999536712491906 22651 chr1 22333994 22333994 1 + C T COAD 22333990 + 22333970 22334010 41 ATGGTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGT ATGGTGTGTGCTGGAGGGTACATCTGCTCCGGCTGCAACGT < 41bp 1 0.287594130771837 1 0.109822958707809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333990 chr1:22333994 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_21647 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643919276 1 0.999536712161448 hm5C_site_22651 DeepMRMD:1;iRNA_m5C:0.999536712161448 22652 chr1 22333994 22333994 1 + C T COAD 22333993 + 22333973 22334013 41 GTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAG GTGTGTGCTGGAGGGTACATCTGCTCCGGCTGCAACGTGAG < 41bp 1 0.663305270108768 1 0.298627316951752 experiment 0.673389459782463 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333993 chr1:22333994 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_21648 0 0 0 0 1 Endoplasmic reticulum 1 0.500231723628131 1 0.999536552743739 hm5C_site_22652 DeepMRMD:1;iRNA_m5C:0.999536552743739 22653 chr1 22333994 22333994 1 + C T COAD 22333998 + 22333978 22334018 41 TGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGC TGCTGGAGGGTACATCTGCTCCGGCTGCAACGTGAGTCAGC < 41bp 1 0.445004749570411 1 0.276171773672104 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333998 chr1:22333994 nonsynonymous SNV 0.005 1 17 hm5C_associated_SNPs_21649 0 0 0 0 1 Endoplasmic reticulum 1 0.50023030689634 1 0.999539386207321 hm5C_site_22653 DeepMRMD:1;iRNA_m5C:0.999539386207321 22654 chr1 22333994 22333994 1 + C T COAD 22333999 + 22333979 22334019 41 GCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCT GCTGGAGGGTACATCTGCTCCGGCTGCAACGTGAGTCAGCT < 41bp 1 0.531958610495838 1 0.199096411466599 experiment 0.936082779008324 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333999 chr1:22333994 nonsynonymous SNV 0.005 1 16 hm5C_associated_SNPs_21650 0 0 0 0 1 Endoplasmic reticulum 1 0.500231646823754 1 0.999536706352491 hm5C_site_22654 DeepMRMD:1;iRNA_m5C:0.999536706352491 22655 chr1 22333994 22333994 1 + C T COAD 22334002 + 22333982 22334022 41 GGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTT GGAGGGTACATCTGCTCCGGCTGCAACGTGAGTCAGCTCTT < 41bp 1 0.664385404499398 1 0.230264931917191 experiment 0.671229191001204 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334002 chr1:22333994 nonsynonymous SNV 0.005 1 13 hm5C_associated_SNPs_21651 0 0 0 0 1 Endoplasmic reticulum 1 0.500231361098764 1 0.999537277802472 hm5C_site_22655 DeepMRMD:1;iRNA_m5C:0.999537277802472 22656 chr1 22333994 22333994 1 + C T COAD 22334005 + 22333985 22334025 41 GGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTTACC GGGTACATCTGCTCCGGCTGCAACGTGAGTCAGCTCTTACC < 41bp 1 0.525364709844055 1 0.196414738893509 experiment 0.949270580311889 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334005 chr1:22333994 nonsynonymous SNV 0.005 1 10 hm5C_associated_SNPs_21652 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643954886 1 0.999536712090227 hm5C_site_22656 DeepMRMD:1;iRNA_m5C:0.999536712090227 22657 chr19 10940902 10940902 1 + C T COAD 10940900 + 10940880 10940920 41 GGCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCC GGCCCCCCCTGATTCCTGTTCCTGTGGGGGCAGCAGCCTCC < 41bp 1 0.190906575899888 1 0.0740089118480682 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940900 chr19:10940902 synonymous SNV . 0 23 hm5C_associated_SNPs_21653 1 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22657 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 22658 chr19 10940902 10940902 1 + C T COAD 10940901 + 10940881 10940921 41 GCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCCT GCCCCCCCTGATTCCTGTTCCTGTGGGGGCAGCAGCCTCCT < 41bp 1 0.521939337925716 1 0.207538962364197 experiment 0.956121324148568 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940901 chr19:10940902 synonymous SNV . 0 22 hm5C_associated_SNPs_21654 1 0 1 0 1 Nucleus 1 0.500231643978388 1 0.999536712043224 hm5C_site_22658 DeepMRMD:1;iRNA_m5C:0.999536712043224 not specified not specified 22659 chr12 27933782 27933782 1 + C A COAD 27933800 + 27933780 27933820 41 CCCCAAGCTCCAGGGGATGTCAGCCTGAAGCAGAGGCTGAG CCACAAGCTCCAGGGGATGTCAGCCTGAAGCAGAGGCTGAG < 41bp 1 0.562885276109878 1 0.420019388198853 experiment 0.874229447780244 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KLHL42 ENSG00000087448 CDS Human protein_coding chr12:27933800 chr12:27933782 synonymous SNV . 0 3 hm5C_associated_SNPs_21656 0 0 1 0 0 Ribosome 1 0.500231643943073 1 0.999536712113854 hm5C_site_22659 DeepMRMD:1;iRNA_m5C:0.999536712113854 22660 chr9 139730247 139730247 1 + G A COAD 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCACACTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG < 41bp 1 0.542351534783662 1 0.892047882080078 experiment 0.915296930432675 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730247 synonymous SNV . 0 7 hm5C_associated_SNPs_21657 0 0 1 0 2 chromatin 1 0.500231644021896 0.215904235839844 0.999536711956208 hm5C_site_22660 DeepMRMD:0.215904235839844;iRNA_m5C:0.999536711956208 22661 chr6 159086547 159086547 1 + C T COAD 159086565 + 159086545 159086585 41 GGCGCCGTGTGCCGGGGCTGCAGCCACCGCGTGTGTGCCCA GGTGCCGTGTGCCGGGGCTGCAGCCACCGCGTGTGTGCCCA < 41bp 1 0.659074091396754 1 0.523190975189209 experiment 0.681851817206492 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086565 chr6:159086547 synonymous SNV . 0 3 hm5C_associated_SNPs_21658 0 0 0 0 1 exosome 1 0.50023165088523 0.953618049621582 0.999536698229539 hm5C_site_22661 DeepMRMD:0.953618049621582;iRNA_m5C:0.999536698229539 22662 chr1 6681571 6681571 1 + C A COAD 6681570 + 6681550 6681590 41 CCACACCTGGATTCACCTGTCCTGTGCGAAAATCCGGAAAT CCACACCTGGATTCACCTGTCATGTGCGAAAATCCGGAAAT < 41bp 1 0.410550018743738 1 0.693740904331207 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681570 chr1:6681571 synonymous SNV . 0 22 hm5C_associated_SNPs_21659 0 0 1 0 0 cytosol 1 0.500231657757162 0.612518191337586 0.999536684485676 hm5C_site_22662 DeepMRMD:0.612518191337586;iRNA_m5C:0.999536684485676 22663 chr11 722484 722484 1 + C T COAD 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGCCGTGGACTTCCTGCGTGGCCACCTGGTCCC < 41bp 1 0.325101280137441 1 0.107087254524231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722484 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_21660 0 0 1 0 2 Cytosol 1 0.500231644029678 1 0.999536711940644 hm5C_site_22663 DeepMRMD:1;iRNA_m5C:0.999536711940644 22664 chr12 58109596 58109596 1 + C T COAD 58109602 + 58109582 58109622 41 ATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT ATCGATCGCGTGGATGAGCCCTTGTCCTGCTCTTATGTGCT < 41bp 1 0.383112490950858 1 0.0361058413982391 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OS9 ENSG00000135506 CDS Human protein_coding chr12:58109602 chr12:58109596 synonymous SNV . 0 15 hm5C_associated_SNPs_21661 0 0 1 0 1 Nucleus 1 0.500231645138434 1 0.999536709723132 hm5C_site_22664 DeepMRMD:1;iRNA_m5C:0.999536709723132 22665 chr17 41143142 41143142 1 + A G COAD 41143135 + 41143115 41143155 41 TGCCAACCTCCAGGACCTCTCTCTGGGAGGCAAGGATGAGC TGCCAACCTCCAGGACCTCTCTCTGGGGGGCAAGGATGAGC < 41bp 1 0.499557805967852 1 0.516774296760559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RUNDC1 ENSG00000198863 CDS Human protein_coding chr17:41143135 chr17:41143142 synonymous SNV . 0 28 hm5C_associated_SNPs_21662 0 0 1 0 0 exosome 1 0.500231644011158 0.966451406478882 0.999536711977685 hm5C_site_22665 DeepMRMD:0.966451406478882;iRNA_m5C:0.999536711977685 22666 chr12 57575018 57575018 1 + G A COAD 57575017 + 57574997 57575037 41 TGCCCACGTCAGAGACGACCCGCTCCTGCATGTGCACAGCC TGCCCACGTCAGAGACGACCCACTCCTGCATGTGCACAGCC < 41bp 1 0.0810134526198741 1 0.0814922451972961 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57575017 chr12:57575018 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_21663 0 0 1 0 1 Exosome 1 0.500231643920082 1 0.999536712159837 hm5C_site_22666 DeepMRMD:1;iRNA_m5C:0.999536712159837 22667 chr6 44274745 44274745 1 + C T COAD 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CATCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC < 41bp 1 0.466793251579927 1 0.83631706237793 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274745 nonsynonymous SNV 0.992 5 2 hm5C_associated_SNPs_21664 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 0.32736587524414 0.999536712157815 hm5C_site_22667 DeepMRMD:0.32736587524414;iRNA_m5C:0.999536712157815 22668 chr1 44069403 44069403 1 + C T COAD 44069418 + 44069398 44069438 41 CGGGCCGACGAGGCGCGGCCCAACACCATAGATTTCGGCAA CGGGCTGACGAGGCGCGGCCCAACACCATAGATTTCGGCAA < 41bp 1 0.417903434951627 1 0.0623518824577332 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44069418 chr1:44069403 synonymous SNV . 0 6 hm5C_associated_SNPs_21669 0 0 1 0 0 Ribosome 1 0.500231637965875 1 0.999536724068251 hm5C_site_22668 DeepMRMD:1;iRNA_m5C:0.999536724068251 22669 chr1 16358268 16358268 1 + G A COAD 16358254 + 16358234 16358274 41 TGAACCACAGCATCACCACACTGGCCAAGGACACGCCGCTG TGAACCACAGCATCACCACACTGGCCAAGGACACACCGCTG < 41bp 1 0.417056905457073 1 0.593327820301056 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358254 chr1:16358268 synonymous SNV . 0 35 hm5C_associated_SNPs_21670 0 0 0 0 3 Endoplasmic reticulum 1 0.500231634503485 0.813344359397888 0.999536730993031 hm5C_site_22669 DeepMRMD:0.813344359397888;iRNA_m5C:0.999536730993031 22670 chr11 67202550 67202550 1 + G A COAD 67202551 + 67202531 67202571 41 TACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCC TACCTCCACTCCTGCCACCACCGCCGCCCTCGACCACCGCC < 41bp 1 0.357645336897268 1 0.190523743629456 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202551 chr11:67202550 synonymous SNV . 0 20 hm5C_associated_SNPs_21672 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22670 DeepMRMD:1;iRNA_m5C:0.999536712157815 22671 chr11 67202550 67202550 1 + G A COAD 67202555 + 67202535 67202575 41 TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCCCCTC TCCACTCCTGCCACCACCGCCGCCCTCGACCACCGCCCCTC < 41bp 1 0.622271597910281 1 0.222388625144958 experiment 0.755456804179438 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202555 chr11:67202550 synonymous SNV . 0 16 hm5C_associated_SNPs_21673 0 0 1 0 1 Ribosome 1 0.500231652728155 1 0.999536694543689 hm5C_site_22671 DeepMRMD:1;iRNA_m5C:0.999536694543689 22672 chrX 152914924 152914924 1 + C A COAD 152914918 + 152914898 152914938 41 ACCAGTGGGGCTGCGGGCATCCTTCCCTGTCCAGATCCTGC ACCAGTGGGGCTGCGGGCATCCTTCCATGTCCAGATCCTGC < 41bp 1 0.0153957031614288 1 0.131170481443405 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152914918 chrX:152914924 nonsynonymous SNV 0.990 4 27 hm5C_associated_SNPs_21674 0 0 0 0 0 cytosol 1 0.500231641358769 1 0.999536717282463 hm5C_site_22672 DeepMRMD:1;iRNA_m5C:0.999536717282463 22673 chrX 152914924 152914924 1 + C A COAD 152914922 + 152914902 152914942 41 GTGGGGCTGCGGGCATCCTTCCCTGTCCAGATCCTGCCCAA GTGGGGCTGCGGGCATCCTTCCATGTCCAGATCCTGCCCAA < 41bp 1 0.434169764646581 1 0.774953007698059 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152914922 chrX:152914924 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_21675 0 0 0 0 0 cytosol 1 0.500231643921092 0.450093984603882 0.999536712157815 hm5C_site_22673 DeepMRMD:0.450093984603882;iRNA_m5C:0.999536712157815 22674 chr10 104679412 104679412 1 + C T COAD 104679423 + 104679403 104679443 41 CTTCCTACCCGGTCAGCAAGCTGCTGGACTGCGTCCTGGGC CTTCCTACCTGGTCAGCAAGCTGCTGGACTGCGTCCTGGGC < 41bp 1 0.504348903424876 1 0.407282561063766 experiment 0.991302193150247 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104679423 chr10:104679412 nonsynonymous SNV 1.000 5 10 hm5C_associated_SNPs_21676 0 0 1 0 0 Ribosome 1 0.500231634269382 1 0.999536731461235 hm5C_site_22674 DeepMRMD:1;iRNA_m5C:0.999536731461235 22675 chr20 39721181 39721181 1 + C A COAD 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCACCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.100197390313904 1 0.0352682173252106 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721181 synonymous SNV . 0 7 hm5C_associated_SNPs_21677 0 0 1 3 2 Nucleus 1 0.500231644728285 1 0.99953671054343 hm5C_site_22675 DeepMRMD:1;iRNA_m5C:0.99953671054343 22676 chr15 63358179 63358179 1 + C T COAD 63358189 + 63358169 63358209 41 TGTCTATTCTCCAGCTGACCCTGGTTCTCTCTCTTAGCATC TGTCTATTCTTCAGCTGACCCTGGTTCTCTCTCTTAGCATC < 41bp 1 0.516206587373086 1 0.108930230140686 experiment 0.967586825253827 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63358189 chr15:63358179 nonsynonymous SNV 0.602 2 11 hm5C_associated_SNPs_21678 0 0 1 0 1 Ribosome 1 0.500231643920671 1 0.999536712158657 hm5C_site_22676 DeepMRMD:1;iRNA_m5C:0.999536712158657 22677 chr15 63358179 63358179 1 + C T COAD 63358195 + 63358175 63358215 41 TTCTCCAGCTGACCCTGGTTCTCTCTCTTAGCATCCTGCCT TTCTTCAGCTGACCCTGGTTCTCTCTCTTAGCATCCTGCCT < 41bp 1 0.114511674060045 1 0.0443845987319946 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPM1 ENSG00000140416 CDS Human protein_coding chr15:63358195 chr15:63358179 nonsynonymous SNV 0.602 2 5 hm5C_associated_SNPs_21679 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_22677 DeepMRMD:1;iRNA_m5C:0.999536712157817 22678 chr7 5336823 5336823 1 + C T COAD 5336820 + 5336800 5336840 41 CACGACGTTGTCGCCGGGGACGTCCACTTCGTAAGTGCGCA CACGACGTTGTCGCCGGGGACGTTCACTTCGTAAGTGCGCA < 41bp 1 0.0349921875482977 1 0.0635756552219391 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336820 chr7:5336823 synonymous SNV . 0 24 hm5C_associated_SNPs_21680 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643917065 1 0.999536712165869 hm5C_site_22678 DeepMRMD:1;iRNA_m5C:0.999536712165869 22679 chr1 21771647 21771647 1 + C T COAD 21771644 + 21771624 21771664 41 AGGCCCTGATGTAGAAACTTCCCCATTCGGTGCACCAAGAG AGGCCCTGATGTAGAAACTTCCCTATTCGGTGCACCAAGAG < 41bp 1 0.283461270952681 1 0.296848237514496 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21771644 chr1:21771647 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_21681 0 0 1 0 1 nucleus 1 0.500231643919651 1 0.999536712160699 hm5C_site_22679 DeepMRMD:1;iRNA_m5C:0.999536712160699 22680 chr2 204259440 204259440 1 + G A COAD 204259431 + 204259411 204259451 41 TTCTTTTTGTAGGCGGCACTCCCCCTATCGCACACTGGAGC TTCTTTTTGTAGGCGGCACTCCCCCTATCACACACTGGAGC < 41bp 1 0.305692800161069 1 0.201586306095123 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204259431 chr2:204259440 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_21682 0 0 1 0 0 Cytosol 1 0.500231643921085 1 0.999536712157831 hm5C_site_22680 DeepMRMD:1;iRNA_m5C:0.999536712157831 22681 chr2 204259440 204259440 1 + G A COAD 204259435 + 204259415 204259455 41 TTTTGTAGGCGGCACTCCCCCTATCGCACACTGGAGCCAGT TTTTGTAGGCGGCACTCCCCCTATCACACACTGGAGCCAGT < 41bp 1 0.201057679286163 1 0.165690511465073 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204259435 chr2:204259440 nonsynonymous SNV 1.000 5 26 hm5C_associated_SNPs_21683 0 0 1 0 0 Cytosol 1 0.50023164392108 1 0.999536712157839 hm5C_site_22681 DeepMRMD:1;iRNA_m5C:0.999536712157839 22682 chr3 4776937 4776937 1 + C A COAD 4776929 + 4776909 4776949 41 TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATCGACC TCACCTTGACAAGGAGGGGGCTTCCAATATAGTTATCGACC < 41bp 1 0.0226176248701017 1 0.0920966863632202 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4776929 chr3:4776937 nonsynonymous SNV 0.984 5 29 hm5C_associated_SNPs_21684 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22682 DeepMRMD:1;iRNA_m5C:0.999536712157815 22683 chr1 204379492 204379492 1 + C T COAD 204379494 - 204379474 204379514 41 CCCAACACAGTTTGTTCCTGCTGCTGGAGACATTCCTGGAA CCCAACACAGTTTGTTCCTGCTACTGGAGACATTCCTGGAA < 41bp 1 0.365286233425936 1 0.11737248301506 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R15B ENSG00000158615 CDS Human protein_coding chr1:204379494 chr1:204379492 nonsynonymous SNV 0.025 1 23 hm5C_associated_SNPs_21685 0 0 1 0 0 Ribosome 1 0.500231636729659 1 0.999536726540682 hm5C_site_22683 DeepMRMD:1;iRNA_m5C:0.999536726540682 22684 chr1 45808613 45808613 1 + G A COAD 45808600 + 45808580 45808620 41 ATCCTTCCAGCATGAGGGACCATATTGATTACCGCTGCTGC ATCCTTCCAGCATGAGGGACCATATTGATTACCACTGCTGC < 41bp 1 0.0962581955528892 1 0.0473159849643707 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TOE1 ENSG00000132773 CDS Human protein_coding chr1:45808600 chr1:45808613 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_21686 0 0 1 1 1 Ribosome 1 0.500231644335393 1 0.999536711329214 hm5C_site_22684 DeepMRMD:1;iRNA_m5C:0.999536711329214 22685 chr11 61252184 61252184 1 + C T COAD 61252171 + 61252151 61252191 41 TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCCAGGAGCA TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCTAGGAGCA < 41bp 1 0.103319705387553 1 0.0580916106700897 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252171 chr11:61252184 stopgain 0.995 0 34 hm5C_associated_SNPs_21688 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22685 DeepMRMD:1;iRNA_m5C:0.999536712157815 22686 chrX 152088926 152088926 1 + C T COAD 152088929 + 152088909 152088949 41 CCCCGGGAGCACTCCTACGTCCTGTCAGCGGCCAAGAAGAG CCCCGGGAGCACTCCTATGTCCTGTCAGCGGCCAAGAAGAG < 41bp 1 0.211155668524118 1 0.113571554422379 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152088929 chrX:152088926 synonymous SNV . 0 18 hm5C_associated_SNPs_21689 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_22686 DeepMRMD:1;iRNA_m5C:0.999536712157816 22687 chr1 223934705 223934705 1 + C T COAD 223934721 + 223934701 223934741 41 TCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT TCAATGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT < 41bp 1 0.0655229726604789 1 0.064136415719986 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934721 chr1:223934705 synonymous SNV . 0 5 hm5C_associated_SNPs_21691 0 0 1 0 1 Ribosome 1 0.500231643195324 1 0.999536713609352 hm5C_site_22687 DeepMRMD:1;iRNA_m5C:0.999536713609352 22688 chr2 85598241 85598241 1 + G A COAD 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGACTCGCCGCCCTCCGACACTACCTCT < 41bp 1 0.369796373685449 1 0.271815210580826 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598241 synonymous SNV . 0 16 hm5C_associated_SNPs_21692 0 0 0 1 1 Cytosol 1 0.500231646384029 1 0.999536707231942 hm5C_site_22688 DeepMRMD:1;iRNA_m5C:0.999536707231942 22689 chr2 85598241 85598241 1 + G A COAD 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGACTCGCCGCCCTCCGACACTACCTCTTCGGG < 41bp 1 0.691612576399922 1 0.803031206130981 experiment 0.616774847200155 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598241 synonymous SNV . 0 11 hm5C_associated_SNPs_21693 0 0 0 1 1 Cytosol 1 0.500231643921339 0.393937587738038 0.999536712157322 hm5C_site_22689 DeepMRMD:0.393937587738038;iRNA_m5C:0.999536712157322 22690 chr1 156756826 156756826 1 + G A COAD 156756842 + 156756822 156756862 41 GGACGATGCAGCCAATGCCCCCCTTGAATTCAAGATGGCAG GGACAATGCAGCCAATGCCCCCCTTGAATTCAAGATGGCAG < 41bp 1 0.0558604791430631 1 0.125044703483582 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756842 chr1:156756826 nonsynonymous SNV 0.999 2 5 hm5C_associated_SNPs_21694 0 0 1 0 0 Ribosome 1 0.50023164392105 1 0.999536712157901 hm5C_site_22690 DeepMRMD:1;iRNA_m5C:0.999536712157901 22691 chr2 121554970 121554970 1 + T C COAD 121554962 + 121554942 121554982 41 AAAAGTGGGATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG AAAAGTGGGATCCTGGAGGCCGCTGGCTCCCCCGACCCGGG < 41bp 1 0.310229946578531 1 0.559940218925476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLI2 ENSG00000074047 CDS Human protein_coding chr2:121554962 chr2:121554970 nonsynonymous SNV 0.825 3 29 hm5C_associated_SNPs_21695 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921091 0.880119562149048 0.999536712157818 hm5C_site_22691 DeepMRMD:0.880119562149048;iRNA_m5C:0.999536712157818 22692 chr17 17701375 17701375 1 + C A COAD 17701357 + 17701337 17701377 41 ACCCGGCCAACTTCAAGGACCTTGGGGACCTCTGTGGGCCC ACCCGGCCAACTTCAAGGACCTTGGGGACCTCTGTGGGACC < 41bp 1 0.15122000582292 1 0.125442773103714 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17701357 chr17:17701375 nonsynonymous SNV 0.997 4 39 hm5C_associated_SNPs_21696 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_22692 DeepMRMD:1;iRNA_m5C:0.999536712157815 22693 chr11 65402797 65402797 1 + C T COAD 65402789 + 65402769 65402809 41 CATCTCACATGAGGGTGACCCAGCATGGCGCAGCGCCATCC CATCTCACATGAGGGTGACCCAGCATGGTGCAGCGCCATCC < 41bp 1 0.690664771540778 1 0.662644863128662 experiment 0.618670456918444 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402789 chr11:65402797 nonsynonymous SNV 0.957 4 29 hm5C_associated_SNPs_21697 0 0 1 0 0 Ribosome 1 0.500231643921093 0.674710273742676 0.999536712157815 hm5C_site_22693 DeepMRMD:0.674710273742676;iRNA_m5C:0.999536712157815 22694 chr11 65402797 65402797 1 + C T COAD 65402799 + 65402779 65402819 41 GAGGGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACAC GAGGGTGACCCAGCATGGTGCAGCGCCATCCTCAGCAACAC < 41bp 1 0.306021424175865 1 0.232081025838852 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402799 chr11:65402797 nonsynonymous SNV 0.957 4 19 hm5C_associated_SNPs_21698 0 0 1 0 0 Ribosome 1 0.500231643788109 1 0.999536712423782 hm5C_site_22694 DeepMRMD:1;iRNA_m5C:0.999536712423782 22695 chr11 65402797 65402797 1 + C T COAD 65402802 + 65402782 65402822 41 GGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCC GGTGACCCAGCATGGTGCAGCGCCATCCTCAGCAACACGCC < 41bp 1 0.402017510513352 1 0.37116414308548 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402802 chr11:65402797 nonsynonymous SNV 0.957 4 16 hm5C_associated_SNPs_21699 0 0 1 0 0 Ribosome 1 0.500237630743794 1 0.999524738512411 hm5C_site_22695 DeepMRMD:1;iRNA_m5C:0.999524738512411 22696 chr11 65402797 65402797 1 + C T COAD 65402804 + 65402784 65402824 41 TGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCCCT TGACCCAGCATGGTGCAGCGCCATCCTCAGCAACACGCCCT < 41bp 1 0.0153849716988403 1 0.0185776948928833 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402804 chr11:65402797 nonsynonymous SNV 0.957 4 14 hm5C_associated_SNPs_21700 0 0 1 0 0 Ribosome 1 0.500231793075375 1 0.99953641384925 hm5C_site_22696 DeepMRMD:1;iRNA_m5C:0.99953641384925 22697 chr11 65402797 65402797 1 + C T COAD 65402805 + 65402785 65402825 41 GACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCCCTC GACCCAGCATGGTGCAGCGCCATCCTCAGCAACACGCCCTC < 41bp 1 0.0531660914043323 1 0.0646606981754303 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402805 chr11:65402797 nonsynonymous SNV 0.957 4 13 hm5C_associated_SNPs_21701 0 0 1 0 0 Ribosome 1 0.500231643926916 1 0.999536712146168 hm5C_site_22697 DeepMRMD:1;iRNA_m5C:0.999536712146168 22698 chr19 11145705 11145705 1 + G A COAD 11145691 + 11145671 11145711 41 TCGTGGATCATCAAGGACGACGCGGAGGTGGAGCGGCTGAC TCGTGGATCATCAAGGACGACGCGGAGGTGGAGCAGCTGAC < 41bp 1 0.664126845161227 1 0.582806468009949 experiment 0.671746309677546 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145691 chr19:11145705 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_21702 0 0 1 0 0 Nucleus 1 0.500197041925954 0.834387063980102 0.999605916148091 hm5C_site_22698 DeepMRMD:0.834387063980102;iRNA_m5C:0.999605916148091 22699 chr19 11145705 11145705 1 + G A COAD 11145704 + 11145684 11145724 41 AGGACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG AGGACGACGCGGAGGTGGAGCAGCTGACCTGTGAGGAGGAG < 41bp 1 0.421449754052237 1 0.582428872585297 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145704 chr19:11145705 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_21703 0 0 1 0 0 Nucleus 1 0.500231643921092 0.835142254829406 0.999536712157815 hm5C_site_22699 DeepMRMD:0.835142254829406;iRNA_m5C:0.999536712157815 22700 chr19 11145705 11145705 1 + G A COAD 11145707 + 11145687 11145727 41 ACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG ACGACGCGGAGGTGGAGCAGCTGACCTGTGAGGAGGAGGAG < 41bp 1 0.274433197574936 1 0.398589968681335 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145707 chr19:11145705 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_21704 0 0 1 0 0 Nucleus 1 0.500231643921119 1 0.999536712157762 hm5C_site_22700 DeepMRMD:1;iRNA_m5C:0.999536712157762 22701 chr12 54333260 54333260 1 + C T COAD 54333251 + 54333231 54333271 41 TCCTACCAGGCGATGCCCGGCTACCTGGACGTGTCGGTGGT TCCTACCAGGCGATGCCCGGCTACCTGGATGTGTCGGTGGT < 41bp 1 0.180483278853414 1 0.0911838114261627 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HOXC13 ENSG00000123364 CDS Human protein_coding chr12:54333251 chr12:54333260 synonymous SNV . 0 30 hm5C_associated_SNPs_21705 0 0 0 0 0 nucleus 1 0.500231635116654 1 0.999536729766691 hm5C_site_22701 DeepMRMD:1;iRNA_m5C:0.999536729766691 22702 chr3 51315089 51315089 1 + C T COAD 51315093 + 51315073 51315113 41 TGGAGAGCCTCCTGGACGTGCTCTTGCAGACTCTGCTCACC TGGAGAGCCTCCTGGATGTGCTCTTGCAGACTCTGCTCACC < 41bp 1 0.128353176659507 1 0.0677226483821869 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOCK3 ENSG00000088538 CDS Human protein_coding chr3:51315093 chr3:51315089 synonymous SNV . 0 17 hm5C_associated_SNPs_21707 0 0 1 0 2 Cytosol 1 0.500231642105071 1 0.999536715789859 hm5C_site_22702 DeepMRMD:1;iRNA_m5C:0.999536715789859 22703 chr13 111287911 111287911 1 + G A COAD 111287910 + 111287890 111287930 41 GTGGTCCAGAAAGGAGAGCGCGACATCCTCTCCAACGGCCA GTGGTCCAGAAAGGAGAGCGCAACATCCTCTCCAACGGCCA < 41bp 1 0.690660604881182 1 0.152411878108978 experiment 0.618678790237637 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111287910 chr13:111287911 nonsynonymous SNV 0.004 4 22 hm5C_associated_SNPs_21708 0 0 1 0 2 Cytosol 1 0.500231643921162 1 0.999536712157675 hm5C_site_22703 DeepMRMD:1;iRNA_m5C:0.999536712157675 22704 chr4 78086980 78086980 1 + G A COAD 78086960 + 78086940 78086980 41 CTTTTTCTCTTTAGTGAGGACTCTTGTGAAGATATGAGTTG CTTTTTCTCTTTAGTGAGGACTCTTGTGAAGATATGAGTTA < 41bp 1 0.165036385857009 1 0.2591632604599 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCNG2 ENSG00000138764 CDS Human protein_coding chr4:78086960 chr4:78086980 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_21709 0 0 1 0 1 Ribosome 1 0.500231645077812 1 0.999536709844376 hm5C_site_22704 DeepMRMD:1;iRNA_m5C:0.999536709844376 22705 chr9 131247126 131247126 1 + G T COAD 131247109 + 131247089 131247129 41 CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAG CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGATGAG < 41bp 1 0.407000356087603 1 0.510841488838196 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247109 chr9:131247126 nonsynonymous SNV 0.932 4 38 hm5C_associated_SNPs_21710 0 0 1 0 1 Cytosol 1 0.500231643921399 0.978317022323608 0.999536712157203 hm5C_site_22705 DeepMRMD:0.978317022323608;iRNA_m5C:0.999536712157203 22706 chr1 228879193 228879193 1 + G A COAD 228879178 + 228879158 228879198 41 CACTGTCCCAAAGCCCCCATCATCCTAGTTGGAACGCAGTC CACTGTCCCAAAGCCCCCATCATCCTAGTTGGAACACAGTC < 41bp 1 0.0960624463234506 1 0.127374857664108 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOU ENSG00000116574 CDS Human protein_coding chr1:228879178 chr1:228879193 synonymous SNV . 0 36 hm5C_associated_SNPs_21711 0 0 1 0 0 Ribosome 1 0.500231643988572 1 0.999536712022856 hm5C_site_22706 DeepMRMD:1;iRNA_m5C:0.999536712022856 22707 chr5 10263288 10263288 1 + G A COAD 10263299 + 10263279 10263319 41 TTTGCCGACGCACTGGAGGTCATCCCCATGGCCCTCTCTGA TTTGCCGACACACTGGAGGTCATCCCCATGGCCCTCTCTGA < 41bp 1 0.0998781612215391 1 0.054828017950058 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10263299 chr5:10263288 nonsynonymous SNV 0.006 4 10 hm5C_associated_SNPs_21712 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22707 DeepMRMD:1;iRNA_m5C:0.999536712157815 22708 chr3 61975365 61975365 1 + T C COAD 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTACTGAC < 41bp 1 0.205930376668183 1 0.184089571237564 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975365 nonsynonymous SNV 0.997 1 37 hm5C_associated_SNPs_21713 0 0 1 0 1 Ribosome 1 0.500231943769538 1 0.999536112460924 hm5C_site_22708 DeepMRMD:1;iRNA_m5C:0.999536112460924 22709 chr6 26124575 26124575 1 + A G COAD 26124556 + 26124536 26124576 41 TTCCCGGTGGGCCGAGTGCACCGCCTGCTCCGTAAAGGCAA TTCCCGGTGGGCCGAGTGCACCGCCTGCTCCGTAAAGGCGA < 41bp 1 0.592469556952244 1 0.115151911973953 experiment 0.815060886095511 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AC ENSG00000180573 CDS Human protein_coding chr6:26124556 chr6:26124575 nonsynonymous SNV 0.874 2 40 hm5C_associated_SNPs_21714 0 0 1 0 0 Ribosome 1 0.500231643925057 1 0.999536712149886 hm5C_site_22709 DeepMRMD:1;iRNA_m5C:0.999536712149886 22710 chr1 155033946 155033946 1 + C A COAD 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCCCTTCCAGGCCGCTGCCGCCTGACCATGTGTCCAAG < 41bp 1 0.220807260232344 1 0.274939805269241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033946 nonsynonymous SNV 0.998 3 31 hm5C_associated_SNPs_21716 0 0 1 0 3 Ribosome 1 0.500231644758408 1 0.999536710483183 hm5C_site_22710 DeepMRMD:1;iRNA_m5C:0.999536710483183 22711 chr17 72435981 72435981 1 + G T COAD 72435978 + 72435958 72435998 41 CTCTTCCTGTTCCCAGGGGCCTGGGCCCAGGGCCATGTCCC CTCTTCCTGTTCCCAGGGGCCTGTGCCCAGGGCCATGTCCC < 41bp 1 0.243462490021364 1 0.11256805062294 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPRC5C ENSG00000170412 CDS Human protein_coding chr17:72435978 chr17:72435981 nonsynonymous SNV 0.104 0 24 hm5C_associated_SNPs_21718 0 0 1 0 0 nucleus 1 0.500231638815203 1 0.999536722369595 hm5C_site_22711 DeepMRMD:1;iRNA_m5C:0.999536722369595 22712 chr22 42042964 42042964 1 + G T COAD 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGTCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG < 41bp 1 0.0797976727678391 1 0.224242150783539 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042964 nonsynonymous SNV 0.861 3 9 hm5C_associated_SNPs_21719 0 0 1 0 1 Cytosol 1 0.500231644951301 1 0.999536710097398 hm5C_site_22712 DeepMRMD:1;iRNA_m5C:0.999536710097398 22713 chr1 145304589 145304589 1 + G A COAD 145304596 + 145304576 145304616 41 GGAAGACAAAGTCGACTCAACTCTCATTGGCTCATCCTCTC GGAAGACAAAGTCAACTCAACTCTCATTGGCTCATCCTCTC < 41bp 1 0.0712439315025076 1 0.0582915544509888 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBPF10 ENSG00000163386 CDS Human other chr1:145304596 chr1:145304589 nonsynonymous SNV 0.001 0 14 hm5C_associated_SNPs_21720 0 0 0 0 0 chromatin 1 0.500232998917425 1 0.99953400216515 hm5C_site_22713 DeepMRMD:1;iRNA_m5C:0.99953400216515 22714 chr17 53852170 53852170 1 + G T COAD 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCTATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.288001746518068 1 0.117260336875916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852170 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_21721 0 0 1 3 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_22714 DeepMRMD:1;iRNA_m5C:0.999536712157815 22715 chr3 11596306 11596306 1 + G A COAD 11596287 + 11596267 11596307 41 CTCCCCTTCTCCATGCAGATCTGGGACATGAGCGATGATGA CTCCCCTTCTCCATGCAGATCTGGGACATGAGCGATGATAA < 41bp 1 0.607311861176282 1 0.543082594871521 experiment 0.785376277647436 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATG7 ENSG00000197548 CDS Human protein_coding chr3:11596287 chr3:11596306 nonsynonymous SNV 0.489 3 40 hm5C_associated_SNPs_21722 0 0 1 0 1 Cytosol 1 0.500231643952119 0.913834810256958 0.999536712095761 hm5C_site_22715 DeepMRMD:0.913834810256958;iRNA_m5C:0.999536712095761 22716 chr3 17056270 17056270 1 + C T COAD 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGTG < 41bp 1 0.562324878900311 1 0.148534685373306 experiment 0.875350242199379 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056270 nonsynonymous SNV 0.880 1 40 hm5C_associated_SNPs_21723 0 0 0 0 1 nucleus 1 0.500231453720207 1 0.999537092559585 hm5C_site_22716 DeepMRMD:1;iRNA_m5C:0.999537092559585 22717 chr19 54631736 54631736 1 + G A COAD 54631730 + 54631710 54631750 41 GACGGAGATCCGGAAGCAGGCCAACCGTATGAGCTTCGGAG GACGGAGATCCGGAAGCAGGCCAACCATATGAGCTTCGGAG < 41bp 1 0.0928509581792803 1 0.119075268507004 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631730 chr19:54631736 nonsynonymous SNV 0.984 5 27 hm5C_associated_SNPs_21725 0 0 1 0 2 Cytosol 1 0.500231643929736 1 0.999536712140528 hm5C_site_22717 DeepMRMD:1;iRNA_m5C:0.999536712140528 22718 chr19 54631736 54631736 1 + G A COAD 54631731 + 54631711 54631751 41 ACGGAGATCCGGAAGCAGGCCAACCGTATGAGCTTCGGAGA ACGGAGATCCGGAAGCAGGCCAACCATATGAGCTTCGGAGA < 41bp 1 0.284180553666371 1 0.0682839155197144 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631731 chr19:54631736 nonsynonymous SNV 0.984 5 26 hm5C_associated_SNPs_21726 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_22718 DeepMRMD:1;iRNA_m5C:0.999536712157816 22719 chr19 54631736 54631736 1 + G A COAD 54631735 + 54631715 54631755 41 AGATCCGGAAGCAGGCCAACCGTATGAGCTTCGGAGAGGTC AGATCCGGAAGCAGGCCAACCATATGAGCTTCGGAGAGGTC < 41bp 1 0.145869912789041 1 0.153338491916656 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631735 chr19:54631736 nonsynonymous SNV 0.984 5 22 hm5C_associated_SNPs_21727 0 0 1 0 2 Cytosol 1 0.500231646455084 1 0.999536707089832 hm5C_site_22719 DeepMRMD:1;iRNA_m5C:0.999536707089832 22720 chr19 54631736 54631736 1 + G A COAD 54631743 + 54631723 54631763 41 AAGCAGGCCAACCGTATGAGCTTCGGAGAGGTCAGACTCCC AAGCAGGCCAACCATATGAGCTTCGGAGAGGTCAGACTCCC < 41bp 1 0.33408603037653 1 0.050141841173172 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631743 chr19:54631736 nonsynonymous SNV 0.984 5 14 hm5C_associated_SNPs_21728 0 0 1 0 2 Cytosol 1 0.500231648349629 1 0.999536703300743 hm5C_site_22720 DeepMRMD:1;iRNA_m5C:0.999536703300743 22721 chr19 54631736 54631736 1 + G A COAD 54631746 + 54631726 54631766 41 CAGGCCAACCGTATGAGCTTCGGAGAGGTCAGACTCCCAGA CAGGCCAACCATATGAGCTTCGGAGAGGTCAGACTCCCAGA < 41bp 1 0.641038873865038 1 0.710952281951904 experiment 0.717922252269925 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631746 chr19:54631736 nonsynonymous SNV 0.984 5 11 hm5C_associated_SNPs_21729 0 0 1 0 2 Cytosol 1 0.50023164392217 0.578095436096192 0.99953671215566 hm5C_site_22721 DeepMRMD:0.578095436096192;iRNA_m5C:0.99953671215566 22722 chr22 39078403 39078403 1 + G A COAD 39078388 + 39078368 39078408 41 AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAGCCACT AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAACCACT < 41bp 1 0.319445004846113 1 0.515018165111542 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078388 chr22:39078403 nonsynonymous SNV 0.998 1 36 hm5C_associated_SNPs_21730 0 0 1 0 2 Ribosome 1 0.50023164387735 0.969963669776916 0.999536712245301 hm5C_site_22722 DeepMRMD:0.969963669776916;iRNA_m5C:0.999536712245301 22723 chr12 52636842 52636842 1 + G A COAD 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCTCCAGAATACCCGGAATGAGAT < 41bp 1 0.494697165912319 1 0.729472398757935 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636842 nonsynonymous SNV 0.298 2 23 hm5C_associated_SNPs_21732 0 0 0 0 2 Cytosol 1 0.500231643921114 0.54105520248413 0.999536712157773 hm5C_site_22723 DeepMRMD:0.54105520248413;iRNA_m5C:0.999536712157773 22724 chr12 52636842 52636842 1 + G A COAD 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCTCCAGAATACCCGGAATGAGATT < 41bp 1 0.600032561608572 1 0.877696990966797 experiment 0.799934876782856 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636842 nonsynonymous SNV 0.298 2 22 hm5C_associated_SNPs_21733 0 0 0 0 2 Cytosol 1 0.500231643921105 0.244606018066406 0.999536712157789 hm5C_site_22724 DeepMRMD:0.244606018066406;iRNA_m5C:0.999536712157789 22725 chr2 118579618 118579618 1 + G A COAD 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCATTGTGGCCACACCAGGCCATCTGCTGGACCAT < 41bp 1 0.499974289134511 1 0.112006306648254 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579618 nonsynonymous SNV 0.988 3 28 hm5C_associated_SNPs_21734 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_22725 DeepMRMD:1;iRNA_m5C:0.999536712157815 22726 chr9 136217511 136217511 1 + G T COAD 136217530 + 136217510 136217550 41 AGGGAAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACC ATGGAAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACC < 41bp 1 0.245783928184156 1 0.0460740327835083 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136217530 chr9:136217511 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_21735 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_22726 DeepMRMD:1;iRNA_m5C:0.999536712157815 22727 chr19 42796600 42796600 1 + G A COAD 42796582 + 42796562 42796602 41 TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTG TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCATG < 41bp 1 0.0536465389530143 1 0.0868628919124603 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796582 chr19:42796600 nonsynonymous SNV 0.962 4 39 hm5C_associated_SNPs_21736 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22727 DeepMRMD:1;iRNA_m5C:0.999536712157815 22728 chr19 42796600 42796600 1 + G A COAD 42796583 + 42796563 42796603 41 AGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGC AGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCATGC < 41bp 1 0.157524270975082 1 0.345081865787506 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796583 chr19:42796600 nonsynonymous SNV 0.962 4 38 hm5C_associated_SNPs_21737 0 0 0 0 1 Cytosol 1 0.500231643921885 1 0.99953671215623 hm5C_site_22728 DeepMRMD:1;iRNA_m5C:0.99953671215623 22729 chr19 42796600 42796600 1 + G A COAD 42796590 + 42796570 42796610 41 ACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCT ACCTCGCTGGGGCCCAGCGGCCCCGCCTTCATGCAGCCCCT < 41bp 1 0.186859229471193 1 0.182291448116302 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796590 chr19:42796600 nonsynonymous SNV 0.962 4 31 hm5C_associated_SNPs_21738 0 0 0 0 1 Cytosol 1 0.500231643921087 1 0.999536712157826 hm5C_site_22729 DeepMRMD:1;iRNA_m5C:0.999536712157826 22730 chr19 42796600 42796600 1 + G A COAD 42796591 + 42796571 42796611 41 CCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTG CCTCGCTGGGGCCCAGCGGCCCCGCCTTCATGCAGCCCCTG < 41bp 1 0.208479570107504 1 0.0776559710502625 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796591 chr19:42796600 nonsynonymous SNV 0.962 4 30 hm5C_associated_SNPs_21739 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22730 DeepMRMD:1;iRNA_m5C:0.999536712157815 22731 chr19 42796600 42796600 1 + G A COAD 42796592 + 42796572 42796612 41 CTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGC CTCGCTGGGGCCCAGCGGCCCCGCCTTCATGCAGCCCCTGC < 41bp 1 0.151140271952011 1 0.0931181013584137 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796592 chr19:42796600 nonsynonymous SNV 0.962 4 29 hm5C_associated_SNPs_21740 0 0 0 0 1 Cytosol 1 0.500231643921001 1 0.999536712157997 hm5C_site_22731 DeepMRMD:1;iRNA_m5C:0.999536712157997 22732 chr19 42796600 42796600 1 + G A COAD 42796593 + 42796573 42796613 41 TCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGCT TCGCTGGGGCCCAGCGGCCCCGCCTTCATGCAGCCCCTGCT < 41bp 1 0.319680919065579 1 0.368123322725296 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796593 chr19:42796600 nonsynonymous SNV 0.962 4 28 hm5C_associated_SNPs_21741 0 0 0 0 1 Cytosol 1 0.50023164396733 1 0.99953671206534 hm5C_site_22732 DeepMRMD:1;iRNA_m5C:0.99953671206534 22733 chr9 135942539 135942539 1 + C T COAD 135942521 + 135942501 135942541 41 GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTG GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTATTG < 41bp 1 0.253718673093335 1 0.0440284907817841 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942521 chr9:135942539 nonsynonymous SNV 0.336 4 39 hm5C_associated_SNPs_21742 0 0 0 0 1 exosome 1 0.500228640327835 1 0.99954271934433 hm5C_site_22733 DeepMRMD:1;iRNA_m5C:0.99954271934433 22734 chr9 135942539 135942539 1 + C T COAD 135942522 + 135942502 135942542 41 GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGA GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTATTGA < 41bp 1 0.367940717568126 1 0.345148205757141 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942522 chr9:135942539 nonsynonymous SNV 0.336 4 38 hm5C_associated_SNPs_21743 0 0 0 0 1 exosome 1 0.500231643988386 1 0.999536712023228 hm5C_site_22734 DeepMRMD:1;iRNA_m5C:0.999536712023228 22735 chr9 135942539 135942539 1 + C T COAD 135942523 + 135942503 135942543 41 GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGAT GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTATTGAT < 41bp 1 0.297706386187519 1 0.157770663499832 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942523 chr9:135942539 nonsynonymous SNV 0.336 4 37 hm5C_associated_SNPs_21744 0 0 0 0 1 exosome 1 0.50023077492899 1 0.999538450142021 hm5C_site_22735 DeepMRMD:1;iRNA_m5C:0.999538450142021 22736 chr9 135942539 135942539 1 + C T COAD 135942544 + 135942524 135942564 41 AGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCC AGTGTCTGAAGGTTATTGATCCCCGAGCCCTGACGCTGGCC < 41bp 1 0.398054377072375 1 0.140174567699432 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942544 chr9:135942539 nonsynonymous SNV 0.336 4 16 hm5C_associated_SNPs_21745 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22736 DeepMRMD:1;iRNA_m5C:0.999536712157815 22737 chr9 135942539 135942539 1 + C T COAD 135942545 + 135942525 135942565 41 GTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCT GTGTCTGAAGGTTATTGATCCCCGAGCCCTGACGCTGGCCT < 41bp 1 0.682624901523819 1 0.093866229057312 experiment 0.634750196952363 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942545 chr9:135942539 nonsynonymous SNV 0.336 4 15 hm5C_associated_SNPs_21746 0 0 0 0 1 exosome 1 0.500231643921535 1 0.99953671215693 hm5C_site_22737 DeepMRMD:1;iRNA_m5C:0.99953671215693 22738 chr9 135942539 135942539 1 + C T COAD 135942546 + 135942526 135942566 41 TGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTA TGTCTGAAGGTTATTGATCCCCGAGCCCTGACGCTGGCCTA < 41bp 1 0.552585770946301 1 0.645807504653931 experiment 0.894828458107398 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942546 chr9:135942539 nonsynonymous SNV 0.336 4 14 hm5C_associated_SNPs_21747 0 0 0 0 1 exosome 1 0.500231643921092 0.708384990692138 0.999536712157815 hm5C_site_22738 DeepMRMD:0.708384990692138;iRNA_m5C:0.999536712157815 22739 chr9 135942539 135942539 1 + C T COAD 135942547 + 135942527 135942567 41 GTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTAT GTCTGAAGGTTATTGATCCCCGAGCCCTGACGCTGGCCTAT < 41bp 1 0.633650376487345 1 0.454409331083298 experiment 0.732699247025309 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942547 chr9:135942539 nonsynonymous SNV 0.336 4 13 hm5C_associated_SNPs_21748 0 0 0 0 1 exosome 1 0.500231643921102 1 0.999536712157797 hm5C_site_22739 DeepMRMD:1;iRNA_m5C:0.999536712157797 22740 chr9 135942539 135942539 1 + C T COAD 135942552 + 135942532 135942572 41 AAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGT AAGGTTATTGATCCCCGAGCCCTGACGCTGGCCTATAAGGT < 41bp 1 0.193818077031724 1 0.386031121015549 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942552 chr9:135942539 nonsynonymous SNV 0.336 4 8 hm5C_associated_SNPs_21749 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22740 DeepMRMD:1;iRNA_m5C:0.999536712157815 22741 chr9 135942539 135942539 1 + C T COAD 135942553 + 135942533 135942573 41 AGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG AGGTTATTGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG < 41bp 1 0.325766326335237 1 0.0686376094818115 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942553 chr9:135942539 nonsynonymous SNV 0.336 4 7 hm5C_associated_SNPs_21750 0 0 0 0 1 exosome 1 0.500231643885159 1 0.999536712229683 hm5C_site_22741 DeepMRMD:1;iRNA_m5C:0.999536712229683 22742 chrX 70517784 70517784 1 + A T COAD 70517781 + 70517761 70517801 41 AGGATTCAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT AGGATTCAAGGGAACCTTCCCTGTTGCGGTATATCTCCCAT < 41bp 1 0.452949153669734 1 0.0988571345806122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517781 chrX:70517784 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_21751 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22742 DeepMRMD:1;iRNA_m5C:0.999536712157815 22743 chr14 93119173 93119173 1 + T C COAD 93119189 + 93119169 93119209 41 ACGCTTTCCTCTCCAACAACCGCAAGCTGTACAAGAAGGTG ACGCCTTCCTCTCCAACAACCGCAAGCTGTACAAGAAGGTG < 41bp 1 0.405511294129328 1 0.286008059978485 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93119189 chr14:93119173 synonymous SNV . 0 5 hm5C_associated_SNPs_21752 0 0 1 0 0 cytosol 1 0.500231640211813 1 0.999536719576374 hm5C_site_22743 DeepMRMD:1;iRNA_m5C:0.999536719576374 22744 chrX 70517783 70517783 1 + G T COAD 70517781 + 70517761 70517801 41 AGGATTCAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT AGGATTCAAGGGAACCTTCCCTTATGCGGTATATCTCCCAT < 41bp 1 0.283085729745391 1 0.0705422163009644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517781 chrX:70517783 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_21753 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22744 DeepMRMD:1;iRNA_m5C:0.999536712157815 22745 chr20 23350277 23350277 1 + C A COAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCATCCAGCGCCACCGCCGCATCCA < 41bp 1 0.480914587917784 1 0.627912819385529 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350277 nonsynonymous SNV 0.984 4 19 hm5C_associated_SNPs_21754 0 0 0 0 1 Cytosol 1 0.500231643906182 0.744174361228942 0.999536712187637 hm5C_site_22745 DeepMRMD:0.744174361228942;iRNA_m5C:0.999536712187637 22746 chr7 128491319 128491319 1 + A T COAD 128491320 + 128491300 128491340 41 TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCCTA TTCTATGTGGATGCCATCATCAGCCGCCATGTCAGTGCCTA < 41bp 1 0.414895220579047 1 0.881879270076752 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128491320 chr7:128491319 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_21755 0 0 1 0 2 chromatin 1 0.500231643921093 0.236241459846496 0.999536712157815 hm5C_site_22746 DeepMRMD:0.236241459846496;iRNA_m5C:0.999536712157815 22747 chr21 37781673 37781673 1 + C A COAD 37781678 + 37781658 37781698 41 AATTAATCCATTAGGCCCATCGCTCATCTTCCATGTCCTGG AATTAATCCATTAGGACCATCGCTCATCTTCCATGTCCTGG < 41bp 1 0.123765970848422 1 0.0507002174854279 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37781678 chr21:37781673 nonsynonymous SNV 0.385 4 16 hm5C_associated_SNPs_21756 0 0 0 0 2 Ribosome 1 0.500231650134376 1 0.999536699731248 hm5C_site_22747 DeepMRMD:1;iRNA_m5C:0.999536699731248 22748 chr17 12028668 12028668 1 + T C COAD 12028682 + 12028662 12028702 41 GATGTCTGGAGTTTGGGGATCACATTGGTATGTTTATGCTG GATGTCCGGAGTTTGGGGATCACATTGGTATGTTTATGCTG < 41bp 1 0.45408098623122 1 0.128567934036255 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028682 chr17:12028668 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_21757 0 0 1 0 2 chromatin 1 0.500235782723766 1 0.999528434552468 hm5C_site_22748 DeepMRMD:1;iRNA_m5C:0.999528434552468 22749 chr18 44626631 44626631 1 + G T COAD 44626629 + 44626609 44626649 41 TTTTTGGCTGTTTCAGGAGACTGAGGGCTACTCAGGCTCAG TTTTTGGCTGTTTCAGGAGACTTAGGGCTACTCAGGCTCAG < 41bp 1 0.398912187930183 1 0.319915056228638 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44626629 chr18:44626631 stopgain 0.959 1 23 hm5C_associated_SNPs_21758 0 0 0 0 2 chromatin 1 0.500231643919034 1 0.999536712161932 hm5C_site_22749 DeepMRMD:1;iRNA_m5C:0.999536712161932 22750 chr18 8825455 8825455 1 + C T COAD 8825449 + 8825429 8825469 41 GGCCTGCCAGACCAATGGGTCCCGGACGATGGGGACCCAGA GGCCTGCCAGACCAATGGGTCCCGGATGATGGGGACCCAGA < 41bp 1 0.207903235638257 1 0.130658745765686 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825449 chr18:8825455 nonsynonymous SNV 0.703 3 27 hm5C_associated_SNPs_21759 0 0 0 0 0 Nucleus 1 0.500223663186127 1 0.999552673627747 hm5C_site_22750 DeepMRMD:1;iRNA_m5C:0.999552673627747 22751 chr18 8825455 8825455 1 + C T COAD 8825450 + 8825430 8825470 41 GCCTGCCAGACCAATGGGTCCCGGACGATGGGGACCCAGAC GCCTGCCAGACCAATGGGTCCCGGATGATGGGGACCCAGAC < 41bp 1 0.438221739605382 1 0.300813615322113 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825450 chr18:8825455 nonsynonymous SNV 0.703 3 26 hm5C_associated_SNPs_21760 0 0 0 0 0 Nucleus 1 0.500231643844659 1 0.999536712310682 hm5C_site_22751 DeepMRMD:1;iRNA_m5C:0.999536712310682 22752 chr18 8825455 8825455 1 + C T COAD 8825451 + 8825431 8825471 41 CCTGCCAGACCAATGGGTCCCGGACGATGGGGACCCAGACT CCTGCCAGACCAATGGGTCCCGGATGATGGGGACCCAGACT < 41bp 1 0.272771749605052 1 0.653756022453308 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825451 chr18:8825455 nonsynonymous SNV 0.703 3 25 hm5C_associated_SNPs_21761 0 0 0 0 0 Nucleus 1 0.500231639183632 0.692487955093384 0.999536721632736 hm5C_site_22752 DeepMRMD:0.692487955093384;iRNA_m5C:0.999536721632736 22753 chr18 8825455 8825455 1 + C T COAD 8825464 + 8825444 8825484 41 TGGGTCCCGGACGATGGGGACCCAGACTGTTCAGACCATCA TGGGTCCCGGATGATGGGGACCCAGACTGTTCAGACCATCA < 41bp 1 0.0415510614396029 1 0.09598508477211 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825464 chr18:8825455 nonsynonymous SNV 0.703 3 12 hm5C_associated_SNPs_21762 0 0 0 0 0 Nucleus 1 0.500231643921459 1 0.999536712157082 hm5C_site_22753 DeepMRMD:1;iRNA_m5C:0.999536712157082 22754 chr18 8825455 8825455 1 + C T COAD 8825465 + 8825445 8825485 41 GGGTCCCGGACGATGGGGACCCAGACTGTTCAGACCATCAG GGGTCCCGGATGATGGGGACCCAGACTGTTCAGACCATCAG < 41bp 1 0.313130165028848 1 0.13040566444397 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825465 chr18:8825455 nonsynonymous SNV 0.703 3 11 hm5C_associated_SNPs_21763 0 0 0 0 0 Nucleus 1 0.500232200704342 1 0.999535598591316 hm5C_site_22754 DeepMRMD:1;iRNA_m5C:0.999535598591316 22755 chr18 8825455 8825455 1 + C T COAD 8825466 + 8825446 8825486 41 GGTCCCGGACGATGGGGACCCAGACTGTTCAGACCATCAGT GGTCCCGGATGATGGGGACCCAGACTGTTCAGACCATCAGT < 41bp 1 0.19533340830548 1 0.569541335105896 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825466 chr18:8825455 nonsynonymous SNV 0.703 3 10 hm5C_associated_SNPs_21764 0 0 0 0 0 Nucleus 1 0.500231643926349 0.860917329788208 0.999536712147302 hm5C_site_22755 DeepMRMD:0.860917329788208;iRNA_m5C:0.999536712147302 22756 chr7 128486398 128486398 1 + C T COAD 128486405 + 128486385 128486425 41 AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC AGGTCGCTGTGCCTAAGAGCCCCTTCCGAGTGGGCGTGACC < 41bp 1 0.0217944100841227 1 0.0274174511432648 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486405 chr7:128486398 synonymous SNV . 0 14 hm5C_associated_SNPs_21765 0 0 1 0 1 chromatin 1 0.500231650362578 1 0.999536699274844 hm5C_site_22756 DeepMRMD:1;iRNA_m5C:0.999536699274844 22757 chr15 90771577 90771577 1 + G T COAD 90771587 + 90771567 90771607 41 TTGCTCTACCGGCACCGGAACAGCATGAAAGTCTTCCTGAA TTGCTCTACCTGCACCGGAACAGCATGAAAGTCTTCCTGAA < 41bp 1 0.612695983311578 1 0.711486458778381 experiment 0.774608033376843 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90771587 chr15:90771577 nonsynonymous SNV 0.995 3 11 hm5C_associated_SNPs_21767 0 0 1 0 0 chromatin 1 0.500231643929213 0.577027082443238 0.999536712141573 hm5C_site_22757 DeepMRMD:0.577027082443238;iRNA_m5C:0.999536712141573 22758 chr1 160323964 160323964 1 + C A COAD 160323975 + 160323955 160323995 41 TGCTGTCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCC TGCTGTCATACTCAGGAGGCCAAATCAGTCCCAGCCTCTCC < 41bp 1 0.246346387987415 1 0.12285777926445 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160323975 chr1:160323964 synonymous SNV . 0 10 hm5C_associated_SNPs_21768 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921121 1 0.999536712157758 hm5C_site_22758 DeepMRMD:1;iRNA_m5C:0.999536712157758 22759 chrX 2777918 2777918 1 + G A COAD 2777923 + 2777903 2777943 41 GTCGTCCACTTTTTGGGGTCCATGAAACCTTGGAACTACAA GTCGTCCACTTTTTGAGGTCCATGAAACCTTGGAACTACAA < 41bp 1 0.275240513576667 1 0.179896503686905 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG2 ENSG00000056998 CDS Human protein_coding chrX:2777923 chrX:2777918 nonsynonymous SNV 0.166 4 16 hm5C_associated_SNPs_21769 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_22759 DeepMRMD:1;iRNA_m5C:0.999536712157815 22760 chr19 1434854 1434854 1 + C T COAD 1434836 + 1434816 1434856 41 TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGTGG < 41bp 1 0.277295247317446 1 0.160554617643356 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434836 chr19:1434854 synonymous SNV . 0 39 hm5C_associated_SNPs_21770 0 0 1 0 0 chromatin 1 0.500231643918197 1 0.999536712163607 hm5C_site_22760 DeepMRMD:1;iRNA_m5C:0.999536712163607 22761 chr19 1434854 1434854 1 + C T COAD 1434837 + 1434817 1434857 41 CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGTGGC < 41bp 1 0.345555167840769 1 0.137776613235474 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434837 chr19:1434854 synonymous SNV . 0 38 hm5C_associated_SNPs_21771 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_22761 DeepMRMD:1;iRNA_m5C:0.999536712157815 22762 chr19 1434854 1434854 1 + C T COAD 1434838 + 1434818 1434858 41 CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGTGGCT < 41bp 1 0.464405514342438 1 0.258863627910614 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434838 chr19:1434854 synonymous SNV . 0 37 hm5C_associated_SNPs_21772 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_22762 DeepMRMD:1;iRNA_m5C:0.999536712157815 22763 chr18 74620330 74620330 1 + C T COAD 74620335 + 74620315 74620355 41 AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATGC AGCCTCGATAGATGATAGCACTGTAGACCAGCAGAGCATGC < 41bp 1 0.461835542033731 1 0.208657830953598 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74620335 chr18:74620330 synonymous SNV . 0 16 hm5C_associated_SNPs_21774 0 0 1 0 1 Cytosol 1 0.50023164391951 1 0.99953671216098 hm5C_site_22763 DeepMRMD:1;iRNA_m5C:0.99953671216098 22764 chr1 90473023 90473023 1 + G A COAD 90473035 + 90473015 90473055 41 TGGTGGTCGATTTGAGAGCTCCTACCGGAATAGCCTTGACT TGGTGGTCAATTTGAGAGCTCCTACCGGAATAGCCTTGACT < 41bp 1 0.0434020426306561 1 0.0349647700786591 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90473035 chr1:90473023 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_21775 0 0 1 0 0 Cytosol 1 0.500231643915746 1 0.999536712168508 hm5C_site_22764 DeepMRMD:1;iRNA_m5C:0.999536712168508 22765 chr1 90473023 90473023 1 + G A COAD 90473036 + 90473016 90473056 41 GGTGGTCGATTTGAGAGCTCCTACCGGAATAGCCTTGACTC GGTGGTCAATTTGAGAGCTCCTACCGGAATAGCCTTGACTC < 41bp 1 0.577864366022867 1 0.143146753311157 experiment 0.844271267954266 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90473036 chr1:90473023 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_21776 0 0 1 0 0 Cytosol 1 0.500231602144381 1 0.999536795711238 hm5C_site_22765 DeepMRMD:1;iRNA_m5C:0.999536795711238 22766 chr14 23778031 23778031 1 + T G COAD 23778051 + 23778031 23778071 41 TTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGCGCG GTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGCGCG < 41bp 1 0.689924589990357 1 0.89295619726181 experiment 0.620150820019285 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCL2L2 ENSG00000129473 CDS Human protein_coding chr14:23778051 chr14:23778031 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_21777 0 0 1 0 1 Cytosol 1 0.500231644816186 0.21408760547638 0.999536710367628 hm5C_site_22766 DeepMRMD:0.21408760547638;iRNA_m5C:0.999536710367628 22767 chr2 183616840 183616840 1 + A G COAD 183616850 + 183616830 183616870 41 AGTTACGAAGAGCATCAAATCTTCTTTATGGTCAGCTTAAG AGTTACGAAGGGCATCAAATCTTCTTTATGGTCAGCTTAAG < 41bp 1 0.425589180857087 1 0.254802405834198 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183616850 chr2:183616840 synonymous SNV . 0 11 hm5C_associated_SNPs_21778 0 0 1 0 2 Ribosome 1 0.50023164392111 1 0.999536712157781 hm5C_site_22767 DeepMRMD:1;iRNA_m5C:0.999536712157781 22768 chr11 210611 210611 1 + G A COAD 210603 + 210583 210623 41 CTTTACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGAT CTTTACCGACACCTGGGGACCCTTCTCCAGCACTGTGTGAT < 41bp 1 0.0123753486556758 1 0.0606067776679993 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:210603 chr11:210611 nonsynonymous SNV 0.920 3 29 hm5C_associated_SNPs_21779 0 0 1 0 2 Ribosome 1 0.500231636943217 1 0.999536726113565 hm5C_site_22768 DeepMRMD:1;iRNA_m5C:0.999536726113565 22769 chr1 156255380 156255380 1 + G A COAD 156255378 + 156255358 156255398 41 CCGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT CCGAAGACGATGCCAACCTGCTACCTGAGAAAGCGGCCCGT < 41bp 1 0.243629909654467 1 0.102375239133835 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255378 chr1:156255380 synonymous SNV . 0 23 hm5C_associated_SNPs_21780 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22769 DeepMRMD:1;iRNA_m5C:0.999536712157815 22770 chr1 984307 984307 1 + G A COAD 984297 + 984277 984317 41 GCCGCTCCTTCCTGGCCTTCCCCACTCTCCGCGCCTACCAC GCCGCTCCTTCCTGGCCTTCCCCACTCTCCACGCCTACCAC < 41bp 1 0.118804862459393 1 0.105666905641556 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984297 chr1:984307 nonsynonymous SNV 0.107 2 31 hm5C_associated_SNPs_21781 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643915117 1 0.999536712169767 hm5C_site_22770 DeepMRMD:1;iRNA_m5C:0.999536712169767 22771 chr1 228246784 228246784 1 + C T COAD 228246782 + 228246762 228246802 41 TGGTCGCAACCCGACTTCCGCGCCATCGGTGACTTCCTCAA TGGTCGCAACCCGACTTCCGCGTCATCGGTGACTTCCTCAA < 41bp 1 0.460138893473625 1 0.375212132930756 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WNT3A ENSG00000154342 CDS Human protein_coding chr1:228246782 chr1:228246784 nonsynonymous SNV 0.927 0 23 hm5C_associated_SNPs_21782 0 0 0 0 1 exosome 1 0.500231644488487 1 0.999536711023027 hm5C_site_22771 DeepMRMD:1;iRNA_m5C:0.999536711023027 22772 chr6 30877253 30877253 1 + T C COAD 30877252 + 30877232 30877272 41 AGAACTGGGTGATGCGGATGCTCTTTCTGGAGCAGCCTTTG AGAACTGGGTGATGCGGATGCCCTTTCTGGAGCAGCCTTTG < 41bp 1 0.186012219232183 1 0.0337693989276886 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30877252 chr6:30877253 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_21783 0 0 1 0 2 chromatin 1 0.500231643921094 1 0.999536712157813 hm5C_site_22772 DeepMRMD:1;iRNA_m5C:0.999536712157813 22773 chr20 47896884 47896884 1 + T C COAD 47896873 + 47896853 47896893 41 CCTGCTGGCATATATGATGACTTAGCTTTTTTCCCCGACAG CCTGCTGGCATATATGATGACTTAGCTTTTTCCCCCGACAG < 41bp 1 0.141646166936301 1 0.0428601503372192 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896873 chr20:47896884 . . 0 32 hm5C_associated_SNPs_21784 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_22773 DeepMRMD:1;iRNA_m5C:0.999536712157815 22774 chr20 47896884 47896884 1 + T C COAD 47896878 + 47896858 47896898 41 TGGCATATATGATGACTTAGCTTTTTTCCCCGACAGATCGA TGGCATATATGATGACTTAGCTTTTTCCCCCGACAGATCGA < 41bp 1 0.0496148627095883 1 0.0851960182189941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896878 chr20:47896884 . . 0 27 hm5C_associated_SNPs_21785 0 0 1 0 0 unknown 1 0.500230977822565 1 0.99953804435487 hm5C_site_22774 DeepMRMD:1;iRNA_m5C:0.99953804435487 22775 chr20 47896884 47896884 1 + T C COAD 47896885 + 47896865 47896905 41 TATGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTT TATGATGACTTAGCTTTTTCCCCCGACAGATCGACTATGTT < 41bp 1 0.13317968194128 1 0.0474299788475037 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896885 chr20:47896884 . . 0 20 hm5C_associated_SNPs_21786 0 0 1 0 0 unknown 1 0.500231642468458 1 0.999536715063084 hm5C_site_22775 DeepMRMD:1;iRNA_m5C:0.999536715063084 22776 chr20 47896884 47896884 1 + T C COAD 47896886 + 47896866 47896906 41 ATGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTG ATGATGACTTAGCTTTTTCCCCCGACAGATCGACTATGTTG < 41bp 1 0.471244621307787 1 0.0697082877159119 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896886 chr20:47896884 . . 0 19 hm5C_associated_SNPs_21787 0 0 1 0 0 unknown 1 0.500231643918724 1 0.999536712162552 hm5C_site_22776 DeepMRMD:1;iRNA_m5C:0.999536712162552 22777 chr20 47896884 47896884 1 + T C COAD 47896887 + 47896867 47896907 41 TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGA TGATGACTTAGCTTTTTCCCCCGACAGATCGACTATGTTGA < 41bp 1 0.0437812412494435 1 0.0886692404747009 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896887 chr20:47896884 . . 0 18 hm5C_associated_SNPs_21788 0 0 1 0 0 unknown 1 0.500231643869873 1 0.999536712260253 hm5C_site_22777 DeepMRMD:1;iRNA_m5C:0.999536712260253 22778 chr20 47896884 47896884 1 + T C COAD 47896899 + 47896879 47896919 41 TTTTTTCCCCGACAGATCGACTATGTTGATCTAACTTTTCT TTTTTCCCCCGACAGATCGACTATGTTGATCTAACTTTTCT < 41bp 1 0.126876804321914 1 0.0901049077510834 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896899 chr20:47896884 . . 0 6 hm5C_associated_SNPs_21789 0 0 1 0 0 unknown 1 0.500231646158678 1 0.999536707682644 hm5C_site_22778 DeepMRMD:1;iRNA_m5C:0.999536707682644 22779 chr19 14562786 14562786 1 + C T COAD 14562777 + 14562757 14562797 41 CGCCCAGCCCGGGGCCTTTACAGCCGAAGCGGAAGCCTCAG CGCCCAGCCCGGGGCCTTTACAGCCGAAGTGGAAGCCTCAG < 41bp 1 0.52866822001171 1 0.756251037120819 experiment 0.942663559976581 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562777 chr19:14562786 synonymous SNV . 0 30 hm5C_associated_SNPs_21790 0 0 1 0 1 Ribosome 1 0.500231643921092 0.487497925758362 0.999536712157815 hm5C_site_22779 DeepMRMD:0.487497925758362;iRNA_m5C:0.999536712157815 22780 chr15 50782562 50782562 1 + A G COAD 50782564 + 50782544 50782584 41 TCATCTGCACCTCCTTCCACCCCTCCAACTCATAAAGCCAA TCATCTGCACCTCCTTCCGCCCCTCCAACTCATAAAGCCAA < 41bp 1 0.0333408978027934 1 0.089937686920166 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50782564 chr15:50782562 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_21791 0 0 1 0 0 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_22780 DeepMRMD:1;iRNA_m5C:0.99953671215782 22781 chrX 205508 205508 1 + C A COAD 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCACGCGCCATGTCGTGCTGAA < 41bp 1 0.48326010992496 1 0.198588818311691 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205508 nonsynonymous SNV 0.004 4 29 hm5C_associated_SNPs_21792 0 0 1 0 1 Cytosol 1 0.500279574236257 1 0.999440851527485 hm5C_site_22781 DeepMRMD:1;iRNA_m5C:0.999440851527485 22782 chr1 222837361 222837361 1 + C T COAD 222837353 + 222837333 222837373 41 TCTGCAGGTTAATATGGCTCCAAAAGGGCCCCCTCCTTTCC TCTGCAGGTTAATATGGCTCCAAAAGGGTCCCCTCCTTTCC < 41bp 1 0.551439127903416 1 0.275359332561493 experiment 0.897121744193169 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222837353 chr1:222837361 nonsynonymous SNV 0.988 3 29 hm5C_associated_SNPs_21793 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22782 DeepMRMD:1;iRNA_m5C:0.999536712157815 22783 chr9 19336771 19336771 1 + A G COAD 19336770 + 19336750 19336790 41 ATGATGCTAACAATGGGGAGCACACAGTCTTCGTCAGAGAT ATGATGCTAACAATGGGGAGCGCACAGTCTTCGTCAGAGAT < 41bp 1 0.059103813167974 1 0.213537216186523 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336770 chr9:19336771 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_21794 0 0 1 0 1 Nucleus 1 0.500231643921 1 0.999536712158 hm5C_site_22783 DeepMRMD:1;iRNA_m5C:0.999536712158 22784 chr1 39853297 39853297 1 + A G COAD 39853302 + 39853282 39853322 41 AAGCTAAGATGTCTGAGTTGCGAGTCACTCTGGATCCAGTG AAGCTAAGATGTCTGGGTTGCGAGTCACTCTGGATCCAGTG < 41bp 1 0.140614761954151 1 0.406929105520248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39853302 chr1:39853297 nonsynonymous SNV 0.992 0 16 hm5C_associated_SNPs_21795 0 0 1 0 0 Endoplasmic reticulum 1 0.500231651347256 1 0.999536697305488 hm5C_site_22784 DeepMRMD:1;iRNA_m5C:0.999536697305488 22785 chr16 816651 816651 1 + G A COAD 816657 + 816637 816677 41 CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCC CCACAAGGCTCCTCAGCGGCCCCTCCCACAGGTGGCCACCC < 41bp 1 0.0171148442083467 1 0.116686791181564 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816657 chr16:816651 nonsynonymous SNV 0.016 0 15 hm5C_associated_SNPs_21796 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22785 DeepMRMD:1;iRNA_m5C:0.999536712157815 22786 chr16 816651 816651 1 + G A COAD 816658 + 816638 816678 41 CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCCT CACAAGGCTCCTCAGCGGCCCCTCCCACAGGTGGCCACCCT < 41bp 1 0.00842070287795712 1 0.0563094913959503 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816658 chr16:816651 nonsynonymous SNV 0.016 0 14 hm5C_associated_SNPs_21797 0 0 0 0 1 nucleus 1 0.500231643914329 1 0.999536712171343 hm5C_site_22786 DeepMRMD:1;iRNA_m5C:0.999536712171343 22787 chr11 108559729 108559729 1 + T C COAD 108559748 + 108559728 108559768 41 ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA ACTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA < 41bp 1 0.636632842715652 1 0.879376709461212 experiment 0.726734314568696 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX10 ENSG00000178105 CDS Human protein_coding chr11:108559748 chr11:108559729 synonymous SNV . 0 2 hm5C_associated_SNPs_21798 0 0 1 0 2 Nucleus 1 0.500231643930004 0.241246581077576 0.999536712139993 hm5C_site_22787 DeepMRMD:0.241246581077576;iRNA_m5C:0.999536712139993 22788 chr1 145115798 145115798 1 + A G COAD 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTGCTTGAACATGCATTCCACTTATGCCAAACTT < 41bp 1 0.0545823390427078 1 0.0908592045307159 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115798 . . 0 10 hm5C_associated_SNPs_21800 0 0 1 0 1 Cytosol 1 0.500228842364485 1 0.99954231527103 hm5C_site_22788 DeepMRMD:1;iRNA_m5C:0.99954231527103 22789 chrX 41201832 41201832 1 + A G COAD 41201835 + 41201815 41201855 41 AAATTTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATC AAATTTGAACGTGGTGGGAACAGTCGCTGGTGTGACAAATC < 41bp 1 0.199886346363723 1 0.179742872714996 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201835 chrX:41201832 synonymous SNV . 0 18 hm5C_associated_SNPs_21801 0 0 1 0 2 Nucleus 1 0.500231644181924 1 0.999536711636153 hm5C_site_22789 DeepMRMD:1;iRNA_m5C:0.999536711636153 22790 chrX 41201832 41201832 1 + A G COAD 41201850 + 41201830 41201870 41 GGAAACAGTCGCTGGTGTGACAAATCAGATGAAGATGATTG GGGAACAGTCGCTGGTGTGACAAATCAGATGAAGATGATTG < 41bp 1 0.301604919093348 1 0.562578678131104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201850 chrX:41201832 synonymous SNV . 0 3 hm5C_associated_SNPs_21803 0 0 1 0 2 Nucleus 1 0.500231654279604 0.874842643737792 0.999536691440792 hm5C_site_22790 DeepMRMD:0.874842643737792;iRNA_m5C:0.999536691440792 22791 chr9 6477715 6477715 1 + C A COAD 6477719 + 6477699 6477739 41 GGTGGGAAACATGAACCCAACATGCAGCTTCTGTGTGATGA GGTGGGAAACATGAACACAACATGCAGCTTCTGTGTGATGA < 41bp 1 0.244477966169168 1 0.10742861032486 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6477719 chr9:6477715 nonsynonymous SNV 0.995 5 17 hm5C_associated_SNPs_21805 0 0 1 0 2 Nucleus 1 0.5002453119403 1 0.9995093761194 hm5C_site_22791 DeepMRMD:1;iRNA_m5C:0.9995093761194 22792 chr2 127453545 127453545 1 + G A COAD 127453565 + 127453545 127453585 41 GTCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTACATGTA ATCCTAGTCTCCCTCCTCTTCGTCATGCTGCGCTACATGTA < 41bp 1 0.692709707064333 1 0.312312722206116 experiment 0.614580585871333 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control GYPC ENSG00000136732 CDS Human protein_coding chr2:127453565 chr2:127453545 nonsynonymous SNV 0.015 0 1 hm5C_associated_SNPs_21807 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22792 DeepMRMD:1;iRNA_m5C:0.999536712157815 22793 chr1 156105741 156105741 1 + G A COAD 156105721 + 156105701 156105741 41 AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCCG AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCCA < 41bp 1 0.365890492655439 1 0.288898766040802 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105721 chr1:156105741 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_21808 1 0 1 0 1 Cytosol 1 0.500231643920825 1 0.99953671215835 hm5C_site_22793 DeepMRMD:1;iRNA_m5C:0.99953671215835 not specified not specified 22794 chr1 156105741 156105741 1 + G A COAD 156105730 + 156105710 156105750 41 AAGCTTCGAGACCTGGAGGACTCACTGGCCCGTGAGCGGGA AAGCTTCGAGACCTGGAGGACTCACTGGCCCATGAGCGGGA < 41bp 1 0.278920808055111 1 0.168026775121689 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105730 chr1:156105741 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_21809 1 0 1 0 1 Cytosol 1 0.500231616383116 1 0.999536767233768 hm5C_site_22794 DeepMRMD:1;iRNA_m5C:0.999536767233768 not specified not specified 22795 chr10 102114305 102114305 1 + G A COAD 102114310 + 102114290 102114330 41 GTTGGCTGCTTGTGCGCAAACACCCAGCTGTCAAAGAGAAG GTTGGCTGCTTGTGCACAAACACCCAGCTGTCAAAGAGAAG < 41bp 1 0.449560189275971 1 0.0514573752880096 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102114310 chr10:102114305 nonsynonymous SNV 0.998 4 16 hm5C_associated_SNPs_21810 0 0 1 0 1 Ribosome 1 0.500231526015516 1 0.999536947968968 hm5C_site_22795 DeepMRMD:1;iRNA_m5C:0.999536947968968 22796 chr13 113719271 113719271 1 + A G COAD 113719251 + 113719231 113719271 41 TGTTTTCTCTGTCCCCAAGGCCATCGAAAGTTTCGCCCTCA TGTTTTCTCTGTCCCCAAGGCCATCGAAAGTTTCGCCCTCG < 41bp 1 0.0197521752215655 1 0.0925667881965637 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113719251 chr13:113719271 nonsynonymous SNV 0.273 1 41 hm5C_associated_SNPs_21811 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22796 DeepMRMD:1;iRNA_m5C:0.999536712157815 22797 chr3 52245357 52245357 1 + C T COAD 52245356 + 52245336 52245376 41 CACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTG CACGAGTTCTCTGATTGACACTGTACGGTCCTATGCTGCTG < 41bp 1 0.687230551125436 1 0.185940980911255 experiment 0.625538897749128 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245356 chr3:52245357 synonymous SNV . 0 22 hm5C_associated_SNPs_21812 0 0 1 0 1 Cytosol 1 0.500231643921118 1 0.999536712157764 hm5C_site_22797 DeepMRMD:1;iRNA_m5C:0.999536712157764 22798 chr3 52245357 52245357 1 + C T COAD 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTCTCTGATTGACACTGTACGGTCCTATGCTGCTGGCTTC < 41bp 1 0.36378057664908 1 0.356512904167175 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245357 synonymous SNV . 0 17 hm5C_associated_SNPs_21813 0 0 1 0 1 Cytosol 1 0.50023164393698 1 0.99953671212604 hm5C_site_22798 DeepMRMD:1;iRNA_m5C:0.99953671212604 22799 chr1 22307647 22307647 1 + G A COAD 22307631 + 22307611 22307651 41 ACTCTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGGGGACCTCTTTGTGCATCCACTCTGGAACCACTCG < 41bp 1 0.0965074492888825 1 0.442067176103592 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307631 chr1:22307647 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_21814 0 0 0 0 1 unknown 1 0.500231643854857 1 0.999536712290286 hm5C_site_22799 DeepMRMD:1;iRNA_m5C:0.999536712290286 22800 chr1 22307647 22307647 1 + G A COAD 22307634 + 22307614 22307654 41 CTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGGGGACCTCTTTGTGCATCCACTCTGGAACCACTCGTGT < 41bp 1 0.115234156883008 1 0.0504336655139923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307634 chr1:22307647 nonsynonymous SNV 0.000 1 34 hm5C_associated_SNPs_21815 0 0 0 0 1 unknown 1 0.500231643921061 1 0.999536712157877 hm5C_site_22800 DeepMRMD:1;iRNA_m5C:0.999536712157877 22801 chr1 22307647 22307647 1 + G A COAD 22307635 + 22307615 22307655 41 TGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGGGGACCTCTTTGTGCATCCACTCTGGAACCACTCGTGTG < 41bp 1 0.136963561272658 1 0.0694879591464996 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307635 chr1:22307647 nonsynonymous SNV 0.000 1 33 hm5C_associated_SNPs_21816 0 0 0 0 1 unknown 1 0.50024068368614 1 0.999518632627721 hm5C_site_22801 DeepMRMD:1;iRNA_m5C:0.999518632627721 22802 chr1 22307647 22307647 1 + G A COAD 22307637 + 22307617 22307657 41 GGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG GGGACCTCTTTGTGCATCCACTCTGGAACCACTCGTGTGTG < 41bp 1 0.317903382794619 1 0.0936289727687836 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307637 chr1:22307647 nonsynonymous SNV 0.000 1 31 hm5C_associated_SNPs_21817 0 0 0 0 1 unknown 1 0.500231693578757 1 0.999536612842486 hm5C_site_22802 DeepMRMD:1;iRNA_m5C:0.999536612842486 22803 chr1 22307647 22307647 1 + G A COAD 22307639 + 22307619 22307659 41 GACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGC GACCTCTTTGTGCATCCACTCTGGAACCACTCGTGTGTGGC < 41bp 1 0.645502206331175 1 0.80822741985321 experiment 0.708995587337651 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307639 chr1:22307647 nonsynonymous SNV 0.000 1 29 hm5C_associated_SNPs_21818 0 0 0 0 1 unknown 1 0.50023178118325 0.38354516029358 0.9995364376335 hm5C_site_22803 DeepMRMD:0.38354516029358;iRNA_m5C:0.9995364376335 22804 chr1 22307647 22307647 1 + G A COAD 22307645 + 22307625 22307665 41 TTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGG TTTGTGCATCCACTCTGGAACCACTCGTGTGTGGCCTGTGG < 41bp 1 0.0662663348742613 1 0.0281187891960144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307645 chr1:22307647 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_21819 0 0 0 0 1 unknown 1 0.500230455425996 1 0.999539089148008 hm5C_site_22804 DeepMRMD:1;iRNA_m5C:0.999539089148008 22805 chr1 22307647 22307647 1 + G A COAD 22307646 + 22307626 22307666 41 TTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGG TTGTGCATCCACTCTGGAACCACTCGTGTGTGGCCTGTGGG < 41bp 1 0.15342869789838 1 0.12420192360878 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307646 chr1:22307647 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_21820 0 0 0 0 1 unknown 1 0.50023362103645 1 0.9995327579271 hm5C_site_22805 DeepMRMD:1;iRNA_m5C:0.9995327579271 22806 chr1 22307647 22307647 1 + G A COAD 22307648 + 22307628 22307668 41 GTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGGTG GTGCATCCACTCTGGAACCACTCGTGTGTGGCCTGTGGGTG < 41bp 1 0.492968595046055 1 0.319446116685867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307648 chr1:22307647 nonsynonymous SNV 0.000 1 20 hm5C_associated_SNPs_21821 0 0 0 0 1 unknown 1 0.500231034187196 1 0.999537931625608 hm5C_site_22806 DeepMRMD:1;iRNA_m5C:0.999537931625608 22807 chr8 22473313 22473313 1 + A G COAD 22473327 + 22473307 22473347 41 TCCCAGAGGCCCCTCCACCCCCCCTAGAACCTGCTGTCATC TCCCAGGGGCCCCTCCACCCCCCCTAGAACCTGCTGTCATC < 41bp 1 0.269930415083094 1 0.26706463098526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22473327 chr8:22473313 nonsynonymous SNV 0.994 2 7 hm5C_associated_SNPs_21822 0 0 0 0 0 Nucleus 1 0.500231643921064 1 0.999536712157872 hm5C_site_22807 DeepMRMD:1;iRNA_m5C:0.999536712157872 22808 chr22 23615298 23615298 1 + C T COAD 23615317 + 23615297 23615337 41 ACGAGGAGCACGCTGGTCCTCCATGTAAGTCACAGCGCCCC ATGAGGAGCACGCTGGTCCTCCATGTAAGTCACAGCGCCCC < 41bp 1 0.170813258154678 1 0.0878108441829681 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23615317 chr22:23615298 nonsynonymous SNV 0.855 3 2 hm5C_associated_SNPs_21823 0 0 1 0 2 Ribosome 1 0.500231643940312 1 0.999536712119375 hm5C_site_22808 DeepMRMD:1;iRNA_m5C:0.999536712119375 22809 chr16 31131779 31131779 1 + C T COAD 31131787 + 31131767 31131807 41 GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCGCAA GAGCAGCCTGAGTGCAAGATCACTCGCAACCAAAAGCGCAA < 41bp 1 0.26886360007624 1 0.0538331568241119 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131787 chr16:31131779 nonsynonymous SNV 0.994 3 13 hm5C_associated_SNPs_21824 0 0 1 0 1 Ribosome 1 0.500224734530541 1 0.999550530938918 hm5C_site_22809 DeepMRMD:1;iRNA_m5C:0.999550530938918 22810 chr16 697855 697855 1 + T C COAD 697836 + 697816 697856 41 GCCCAGCCGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGTG GCCCAGCCGGTGAGGGCGGGCCAAGGCCTGTGCAGTACGCG < 41bp 1 0.154387248548178 1 0.350325644016266 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697836 chr16:697855 nonsynonymous SNV 0.984 0 40 hm5C_associated_SNPs_21825 0 0 1 0 1 Cytosol 1 0.500231643921005 1 0.999536712157991 hm5C_site_22810 DeepMRMD:1;iRNA_m5C:0.999536712157991 22811 chr2 75081444 75081444 1 + C T COAD 75081425 + 75081405 75081445 41 TTCCTCCTTTTTCAGGTTGACCAGTATCTCTACCACATGCG TTCCTCCTTTTTCAGGTTGACCAGTATCTCTACCACATGTG < 41bp 1 0.0941316991035289 1 0.0798017084598541 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK2 ENSG00000159399 CDS Human protein_coding chr2:75081425 chr2:75081444 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_21827 0 0 1 0 1 Nucleus 1 0.500231643921571 1 0.999536712156858 hm5C_site_22811 DeepMRMD:1;iRNA_m5C:0.999536712156858 22812 chr3 184102457 184102457 1 + T C COAD 184102443 + 184102423 184102463 41 AGAGCTTCGGGGGCACGTGGCTGCCCTGCCCTACTGTGGGC AGAGCTTCGGGGGCACGTGGCTGCCCTGCCCTACCGTGGGC < 41bp 1 0.375077243498891 1 0.144035249948502 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184102443 chr3:184102457 nonsynonymous SNV 0.994 2 35 hm5C_associated_SNPs_21828 0 0 1 0 1 nucleus 1 0.500231643791682 1 0.999536712416636 hm5C_site_22812 DeepMRMD:1;iRNA_m5C:0.999536712416636 22813 chr9 138378840 138378840 1 + C T COAD 138378822 + 138378802 138378842 41 GGCCCAGCTCCCAGCCCCGGCTCCCTGTCTGATGACAGCAG GGCCCAGCTCCCAGCCCCGGCTCCCTGTCTGATGACAGTAG < 41bp 1 0.118130330241515 1 0.2435542345047 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378822 chr9:138378840 synonymous SNV . 0 39 hm5C_associated_SNPs_21829 0 0 0 0 0 Ribosome 1 0.500231480430767 1 0.999537039138466 hm5C_site_22813 DeepMRMD:1;iRNA_m5C:0.999537039138466 22814 chr16 67914066 67914066 1 + C T COAD 67914050 + 67914030 67914070 41 AGTGGCAGCCTTCAGGCAAGCCCGCGTGGCCTCCTGCCTGG AGTGGCAGCCTTCAGGCAAGCCCGCGTGGCCTCCTGTCTGG < 41bp 1 0.600906242434176 1 0.122797429561615 experiment 0.798187515131647 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914050 chr16:67914066 nonsynonymous SNV 0.003 0 37 hm5C_associated_SNPs_21831 0 0 1 0 1 Cytosol 1 0.500231643916649 1 0.999536712166703 hm5C_site_22814 DeepMRMD:1;iRNA_m5C:0.999536712166703 22815 chr17 38151735 38151735 1 + G A COAD 38151726 + 38151706 38151746 41 CGAATCTCCTTGGCTGACATCGCCCAGAAGCTGCAGTTGGA CGAATCTCCTTGGCTGACATCGCCCAGAAACTGCAGTTGGA < 41bp 1 0.32261942203456 1 0.500120043754578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38151726 chr17:38151735 synonymous SNV . 0 30 hm5C_associated_SNPs_21832 0 0 1 0 2 Ribosome 1 0.50023164434766 0.999759912490844 0.999536711304679 hm5C_site_22815 DeepMRMD:0.999759912490844;iRNA_m5C:0.999536711304679 22816 chr12 1755162 1755162 1 + C T COAD 1755170 + 1755150 1755190 41 CCCAGCCCACCCCGGAGGACCTGGTCTATGTGGACCCCAGC CCCAGCCCACCCTGGAGGACCTGGTCTATGTGGACCCCAGC < 41bp 1 0.623385684028102 1 0.201375305652618 experiment 0.753228631943796 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control WNT5B ENSG00000111186 CDS Human protein_coding chr12:1755170 chr12:1755162 nonsynonymous SNV 0.846 0 13 hm5C_associated_SNPs_21836 0 0 0 0 0 Endoplasmic reticulum 1 0.500234733176302 1 0.999530533647395 hm5C_site_22816 DeepMRMD:1;iRNA_m5C:0.999530533647395 22817 chr1 218458683 218458683 1 + C T COAD 218458666 + 218458646 218458686 41 CCGGCGCAGAAAAATGGCAGCCGCCGCTCCGGACTCACGTG CCGGCGCAGAAAAATGGCAGCCGCCGCTCCGGACTCATGTG < 41bp 1 0.280033812575511 1 0.413143157958984 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RRP15 ENSG00000067533 CDS Human protein_coding chr1:218458666 chr1:218458683 nonsynonymous SNV 0.780 2 38 hm5C_associated_SNPs_21837 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_22817 DeepMRMD:1;iRNA_m5C:0.999536712157818 22818 chr11 65403956 65403956 1 + G A COAD 65403939 + 65403919 65403959 41 GTGGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGG GTGGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAATGG < 41bp 1 0.0467409918445074 1 0.210631191730499 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403939 chr11:65403956 synonymous SNV . 0 38 hm5C_associated_SNPs_21838 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22818 DeepMRMD:1;iRNA_m5C:0.999536712157815 22819 chr11 65403956 65403956 1 + G A COAD 65403940 + 65403920 65403960 41 TGGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGC TGGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAATGGC < 41bp 1 0.145006249451805 1 0.386810302734375 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403940 chr11:65403956 synonymous SNV . 0 37 hm5C_associated_SNPs_21839 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_22819 DeepMRMD:1;iRNA_m5C:0.999536712157817 22820 chr11 65403956 65403956 1 + G A COAD 65403941 + 65403921 65403961 41 GGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCC GGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAATGGCC < 41bp 1 0.0531257420592098 1 0.157098263502121 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403941 chr11:65403956 synonymous SNV . 0 36 hm5C_associated_SNPs_21840 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22820 DeepMRMD:1;iRNA_m5C:0.999536712157815 22821 chr11 65403956 65403956 1 + G A COAD 65403942 + 65403922 65403962 41 GCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCCT GCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAATGGCCT < 41bp 1 0.070924923828129 1 0.182521909475327 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403942 chr11:65403956 synonymous SNV . 0 35 hm5C_associated_SNPs_21841 0 0 1 0 1 Ribosome 1 0.5002316439211 1 0.9995367121578 hm5C_site_22821 DeepMRMD:1;iRNA_m5C:0.9995367121578 22822 chr11 65403956 65403956 1 + G A COAD 65403943 + 65403923 65403963 41 CTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCCTC CTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAATGGCCTC < 41bp 1 0.293570003064381 1 0.346371620893478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403943 chr11:65403956 synonymous SNV . 0 34 hm5C_associated_SNPs_21842 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_22822 DeepMRMD:1;iRNA_m5C:0.999536712157818 22823 chr20 62187855 62187855 1 + A T COAD 62187844 + 62187824 62187864 41 GTCCGAAACCTGCTGCCCAACCGATCCTATAAGTTCACCAT GTCCGAAACCTGCTGCCCAACCGATCCTATATGTTCACCAT < 41bp 1 0.246744771916842 1 0.374530613422394 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FNDC11 ENSG00000125531 CDS Human protein_coding chr20:62187844 chr20:62187855 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_21843 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22823 DeepMRMD:1;iRNA_m5C:0.999536712157815 22824 chr18 7955226 7955226 1 + C T COAD 7955214 + 7955194 7955234 41 ACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTG ACTCCATCAATGGGGATGGGCCCATTGTGGCCTGAGAGGTG < 41bp 1 0.109764784842016 1 0.151760637760162 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955214 chr18:7955226 stopgain 0.987 1 33 hm5C_associated_SNPs_21844 0 0 0 0 0 Nucleus 1 0.500231691223219 1 0.999536617553563 hm5C_site_22824 DeepMRMD:1;iRNA_m5C:0.999536617553563 22825 chr18 7955226 7955226 1 + C T COAD 7955215 + 7955195 7955235 41 CTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGG CTCCATCAATGGGGATGGGCCCATTGTGGCCTGAGAGGTGG < 41bp 1 0.0864563859168274 1 0.0361739099025726 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955215 chr18:7955226 stopgain 0.987 1 32 hm5C_associated_SNPs_21845 0 0 0 0 0 Nucleus 1 0.500231643920505 1 0.99953671215899 hm5C_site_22825 DeepMRMD:1;iRNA_m5C:0.99953671215899 22826 chr18 7955226 7955226 1 + C T COAD 7955216 + 7955196 7955236 41 TCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGA TCCATCAATGGGGATGGGCCCATTGTGGCCTGAGAGGTGGA < 41bp 1 0.0972267532013152 1 0.175580322742462 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955216 chr18:7955226 stopgain 0.987 1 31 hm5C_associated_SNPs_21846 0 0 0 0 0 Nucleus 1 0.500231652323122 1 0.999536695353756 hm5C_site_22826 DeepMRMD:1;iRNA_m5C:0.999536695353756 22827 chr18 7955226 7955226 1 + C T COAD 7955224 + 7955204 7955244 41 TGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCA TGGGGATGGGCCCATTGTGGCCTGAGAGGTGGAGTACTGCA < 41bp 1 0.310473396112747 1 0.0921773016452789 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955224 chr18:7955226 stopgain 0.987 1 23 hm5C_associated_SNPs_21847 0 0 0 0 0 Nucleus 1 0.500230606827124 1 0.999538786345752 hm5C_site_22827 DeepMRMD:1;iRNA_m5C:0.999538786345752 22828 chr18 7955226 7955226 1 + C T COAD 7955225 + 7955205 7955245 41 GGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCAC GGGGATGGGCCCATTGTGGCCTGAGAGGTGGAGTACTGCAC < 41bp 1 0.501352399772149 1 0.212795674800873 experiment 0.997295200455703 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955225 chr18:7955226 stopgain 0.987 1 22 hm5C_associated_SNPs_21848 0 0 0 0 0 Nucleus 1 0.500231643911804 1 0.999536712176391 hm5C_site_22828 DeepMRMD:1;iRNA_m5C:0.999536712176391 22829 chr1 10479771 10479771 1 + G A DLBC 10479787 + 10479767 10479807 41 CCATGGTGGCACCGTGTCATCCTCGTCATACAATGCCTGAT CCATAGTGGCACCGTGTCATCCTCGTCATACAATGCCTGAT < 41bp 1 0.252297172914782 1 0.0704939663410187 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PGD ENSG00000142657 CDS Human protein_coding chr1:10479787 chr1:10479771 nonsynonymous SNV 0.809 4 5 hm5C_associated_SNPs_21849 0 0 1 0 1 Cytosol 1 0.500231643911732 1 0.999536712176536 hm5C_site_22829 DeepMRMD:1;iRNA_m5C:0.999536712176536 22830 chr6 26124565 26124565 1 + C A DLBC 26124556 + 26124536 26124576 41 TTCCCGGTGGGCCGAGTGCACCGCCTGCTCCGTAAAGGCAA TTCCCGGTGGGCCGAGTGCACCGCCTGCTACGTAAAGGCAA < 41bp 1 0.588590160394323 1 0.152040958404541 experiment 0.822819679211353 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AC ENSG00000180573 CDS Human protein_coding chr6:26124556 chr6:26124565 synonymous SNV . 0 30 hm5C_associated_SNPs_21851 0 0 1 0 0 Ribosome 1 0.500232805546421 1 0.999534388907157 hm5C_site_22830 DeepMRMD:1;iRNA_m5C:0.999534388907157 22831 chr8 38899582 38899582 1 + C A DLBC 38899577 + 38899557 38899597 41 CTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG CTGATGAAGCCTATAGTGCTCCCTCATGTGGTAATAAGTTG < 41bp 1 0.110068948419507 1 0.141840428113937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899577 chr8:38899582 synonymous SNV . 0 26 hm5C_associated_SNPs_21852 0 0 1 0 1 Ribosome 1 0.500232568885361 1 0.999534862229278 hm5C_site_22831 DeepMRMD:1;iRNA_m5C:0.999534862229278 22832 chr8 38899582 38899582 1 + C A DLBC 38899581 + 38899561 38899601 41 TGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTGGTGG TGAAGCCTATAGTGCTCCCTCATGTGGTAATAAGTTGGTGG < 41bp 1 0.380547083099482 1 0.476463288068771 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899581 chr8:38899582 synonymous SNV . 0 22 hm5C_associated_SNPs_21853 0 0 1 0 1 Ribosome 1 0.50023164392112 1 0.999536712157761 hm5C_site_22832 DeepMRMD:1;iRNA_m5C:0.999536712157761 22833 chr3 183855505 183855505 1 + G T DLBC 183855522 + 183855502 183855542 41 GATGCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA GATTCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA < 41bp 1 0.414598883231567 1 0.0832209289073944 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183855522 chr3:183855505 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_21854 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22833 DeepMRMD:1;iRNA_m5C:0.999536712157815 22834 chr7 129064932 129064932 1 + C T DLBC 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGTTCCTGAGGGTCGCTATAAGCAGGATGTCTAC < 41bp 1 0.598371672676699 1 0.485393553972244 experiment 0.803256654646601 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064932 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_21855 0 0 0 0 2 chromatin 1 0.500231643914484 1 0.999536712171033 hm5C_site_22834 DeepMRMD:1;iRNA_m5C:0.999536712171033 22835 chr15 68583512 68583512 1 + C T DLBC 68583493 + 68583473 68583513 41 ATGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCG ATGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTTG < 41bp 1 0.223050259917725 1 0.0716131031513214 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583493 chr15:68583512 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_21856 0 0 1 0 0 Ribosome 1 0.500231691407374 1 0.999536617185253 hm5C_site_22835 DeepMRMD:1;iRNA_m5C:0.999536617185253 22836 chr15 68583512 68583512 1 + C T DLBC 68583494 + 68583474 68583514 41 TGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGG TGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTTGG < 41bp 1 0.431386837101075 1 0.302266150712967 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583494 chr15:68583512 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_21857 0 0 1 0 0 Ribosome 1 0.500231641252114 1 0.999536717495771 hm5C_site_22836 DeepMRMD:1;iRNA_m5C:0.999536717495771 22837 chr15 68583512 68583512 1 + C T DLBC 68583501 + 68583481 68583521 41 GAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGGGCTAATG GAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTTGGGCTAATG < 41bp 1 0.364282667719047 1 0.168428987264633 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583501 chr15:68583512 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_21858 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22837 DeepMRMD:1;iRNA_m5C:0.999536712157815 22838 chr15 68583512 68583512 1 + C T DLBC 68583502 + 68583482 68583522 41 AGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGGGCTAATGA AGTCTCAAGTGCCTGGCTGCCCGAGCAGTTTGGGCTAATGA < 41bp 1 0.340721700448086 1 0.46021181344986 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583502 chr15:68583512 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_21859 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22838 DeepMRMD:1;iRNA_m5C:0.999536712157815 22839 chr15 68583512 68583512 1 + C T DLBC 68583503 + 68583483 68583523 41 GTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGGGCTAATGAC GTCTCAAGTGCCTGGCTGCCCGAGCAGTTTGGGCTAATGAC < 41bp 1 0.481302204974707 1 0.393449932336807 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583503 chr15:68583512 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_21860 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22839 DeepMRMD:1;iRNA_m5C:0.999536712157815 22840 chr15 68583512 68583512 1 + C T DLBC 68583507 + 68583487 68583527 41 CAAGTGCCTGGCTGCCCGAGCAGTTCGGGCTAATGACATTA CAAGTGCCTGGCTGCCCGAGCAGTTTGGGCTAATGACATTA < 41bp 1 0.219530952416824 1 0.0461897253990173 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583507 chr15:68583512 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_21861 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22840 DeepMRMD:1;iRNA_m5C:0.999536712157815 22841 chr11 66411319 66411319 1 + C T DLBC 66411334 + 66411314 66411354 41 TCGATCCCTACGATAGACACCTGTTGCCGACCTCAGGAGCT TCGATTCCTACGATAGACACCTGTTGCCGACCTCAGGAGCT < 41bp 1 0.141684827104723 1 0.0590665936470032 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66411334 chr11:66411319 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_21862 0 0 1 0 0 unknown 1 0.500231643296744 1 0.999536713406513 hm5C_site_22841 DeepMRMD:1;iRNA_m5C:0.999536713406513 22842 chr19 40711082 40711082 1 + G A DLBC 40711074 + 40711054 40711094 41 CGGCCAGATTTCGGTAGCATCTTGAAGCGGCTTGAAGTCAT CGGCCAGATTTCGGTAGCATCTTGAAGCAGCTTGAAGTCAT < 41bp 1 0.510553242959567 1 0.721762299537659 experiment 0.978893514080865 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40711074 chr19:40711082 nonsynonymous SNV 0.978 1 29 hm5C_associated_SNPs_21863 0 0 1 0 1 Endoplasmic reticulum 1 0.500231658014489 0.556475400924682 0.999536683971023 hm5C_site_22842 DeepMRMD:0.556475400924682;iRNA_m5C:0.999536683971023 22843 chr5 139917069 139917069 1 + C T DLBC 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATACCTCCCCCAATTGGAACAGAGAGACTGGCCTGAATTC < 41bp 1 0.287320946357742 1 0.518351256847382 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917069 stopgain 0.996 1 35 hm5C_associated_SNPs_21864 0 0 1 0 1 unknown 1 0.500231643921092 0.963297486305236 0.999536712157815 hm5C_site_22843 DeepMRMD:0.963297486305236;iRNA_m5C:0.999536712157815 22844 chr1 155156579 155156579 1 + C T DLBC 155156595 + 155156575 155156615 41 TCATCGGGGGTGGCGCAGTACAGCTCCAGGAGCCAGTGGGC TCATTGGGGGTGGCGCAGTACAGCTCCAGGAGCCAGTGGGC < 41bp 1 0.604633152690873 1 0.313635379076004 experiment 0.790733694618254 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155156595 chr1:155156579 synonymous SNV . 0 5 hm5C_associated_SNPs_21865 0 0 0 0 0 nucleolus 1 0.500231643923403 1 0.999536712153195 hm5C_site_22844 DeepMRMD:1;iRNA_m5C:0.999536712153195 22845 chr8 6302752 6302752 1 + T C DLBC 6302737 + 6302717 6302757 41 GGCCGTGCAACTTCGAGTTGCGTGACTTCTGCCCCTGAAGA GGCCGTGCAACTTCGAGTTGCGTGACTTCTGCCCCCGAAGA < 41bp 1 0.650222379781046 1 0.111318558454514 experiment 0.699555240437908 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCPH1 ENSG00000147316 CDS Human protein_coding chr8:6302737 chr8:6302752 synonymous SNV . 0 36 hm5C_associated_SNPs_21866 0 0 1 0 0 Nucleus 1 0.500231634055658 1 0.999536731888683 hm5C_site_22845 DeepMRMD:1;iRNA_m5C:0.999536731888683 22846 chr19 36218067 36218067 1 + C T DLBC 36218061 + 36218041 36218081 41 TCTTCCCTTTCTCTAGGAAACTACTGCCCGATCTGTACACG TCTTCCCTTTCTCTAGGAAACTACTGTCCGATCTGTACACG < 41bp 1 0.128395328979995 1 0.146018832921982 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218061 chr19:36218067 synonymous SNV . 0 27 hm5C_associated_SNPs_21867 0 0 1 0 1 chromatin 1 0.500231643921084 1 0.999536712157832 hm5C_site_22846 DeepMRMD:1;iRNA_m5C:0.999536712157832 22847 chr19 36218067 36218067 1 + C T DLBC 36218064 + 36218044 36218084 41 TCCCTTTCTCTAGGAAACTACTGCCCGATCTGTACACGCTG TCCCTTTCTCTAGGAAACTACTGTCCGATCTGTACACGCTG < 41bp 1 0.0316365943510925 1 0.0634905397891998 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218064 chr19:36218067 synonymous SNV . 0 24 hm5C_associated_SNPs_21868 0 0 1 0 1 chromatin 1 0.50023164392122 1 0.999536712157561 hm5C_site_22847 DeepMRMD:1;iRNA_m5C:0.999536712157561 22848 chr11 6629314 6629314 1 + G A DLBC 6629294 + 6629274 6629314 41 AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCA < 41bp 1 0.197427596606697 1 0.142735838890076 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629294 chr11:6629314 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_21869 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644051599 1 0.999536711896803 hm5C_site_22848 DeepMRMD:1;iRNA_m5C:0.999536711896803 22849 chr19 10571742 10571742 1 + T A DLBC 10571761 + 10571741 10571781 41 ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT AACACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT < 41bp 1 0.110908464941886 1 0.452166050672531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10571761 chr19:10571742 nonsynonymous SNV 0.995 4 2 hm5C_associated_SNPs_21870 0 0 0 0 2 chromatin 1 0.500231643921103 1 0.999536712157794 hm5C_site_22849 DeepMRMD:1;iRNA_m5C:0.999536712157794 22850 chr16 57171163 57171163 1 + C G DLBC 57171175 + 57171155 57171195 41 CCGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGG CCGGTTTGGGGCCCAGGCCACACAACAGCGGACGGCCACGG < 41bp 1 0.689204619476191 1 0.340458512306213 experiment 0.621590761047618 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57171175 chr16:57171163 nonsynonymous SNV 0.971 4 9 hm5C_associated_SNPs_21871 0 0 1 0 1 chromatin 1 0.500231643921047 1 0.999536712157907 hm5C_site_22850 DeepMRMD:1;iRNA_m5C:0.999536712157907 22851 chr19 46878959 46878959 1 + C T DLBC 46878977 + 46878957 46878997 41 GGCGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT GGTGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT < 41bp 1 0.564572098683584 1 0.522122383117676 experiment 0.870855802632832 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46878977 chr19:46878959 synonymous SNV . 0 3 hm5C_associated_SNPs_21872 0 0 1 0 2 Ribosome 1 0.500231643752594 0.955755233764648 0.999536712494812 hm5C_site_22851 DeepMRMD:0.955755233764648;iRNA_m5C:0.999536712494812 22852 chr22 20079074 20079074 1 + C T DLBC 20079093 + 20079073 20079113 41 GCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA GTAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA < 41bp 1 0.0577504799900684 1 0.102650672197342 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20079093 chr22:20079074 stopgain 0.986 1 2 hm5C_associated_SNPs_21873 0 0 1 0 1 Nucleus 1 0.500231643117136 1 0.999536713765729 hm5C_site_22852 DeepMRMD:1;iRNA_m5C:0.999536713765729 22853 chr1 116206843 116206843 1 + C T DLBC 116206847 + 116206827 116206867 41 CACGCTGCAGGTGGTCCGCTCCACCGATGGCGAGTCCCGCT CACGCTGCAGGTGGTCTGCTCCACCGATGGCGAGTCCCGCT < 41bp 1 0.231687245676976 1 0.106278896331787 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VANGL1 ENSG00000173218 CDS Human protein_coding chr1:116206847 chr1:116206843 nonsynonymous SNV 0.995 5 17 hm5C_associated_SNPs_21874 0 0 0 0 1 Ribosome 1 0.500231643923563 1 0.999536712152874 hm5C_site_22853 DeepMRMD:1;iRNA_m5C:0.999536712152874 22854 chr2 71651066 71651066 1 + G A DLBC 71651064 + 71651044 71651084 41 GCAGTGGAAGGATCTCAGCCCTGCAAGGCAAGCTTTCTAAA GCAGTGGAAGGATCTCAGCCCTACAAGGCAAGCTTTCTAAA < 41bp 1 0.592686843486417 1 0.244550913572311 experiment 0.814626313027165 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71651064 chr2:71651066 synonymous SNV . 0 23 hm5C_associated_SNPs_21876 0 0 1 0 0 Nucleus 1 0.500231646637853 1 0.999536706724294 hm5C_site_22854 DeepMRMD:1;iRNA_m5C:0.999536706724294 22855 chr17 28766060 28766060 1 + G A DLBC 28766053 + 28766033 28766073 41 TGTATCCTAATGAATATTTTCCTCATGGAATAACAAATGGA TGTATCCTAATGAATATTTTCCTCATGAAATAACAAATGGA < 41bp 1 0.0974410682868526 1 0.296499133110046 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28766053 chr17:28766060 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_21877 0 0 1 0 2 Nucleus 1 0.500286718731734 1 0.999426562536532 hm5C_site_22855 DeepMRMD:1;iRNA_m5C:0.999426562536532 22856 chr9 80942972 80942972 1 + C T DLBC 80942983 + 80942963 80943003 41 TCAGTTGTCCAGTGGAGCCCCAAAATAGAAGCAAGATGAAT TCAGTTGTCTAGTGGAGCCCCAAAATAGAAGCAAGATGAAT < 41bp 1 0.407638677365545 1 0.418498247861862 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80942983 chr9:80942972 nonsynonymous SNV 0.905 3 10 hm5C_associated_SNPs_21878 0 0 1 0 1 Ribosome 1 0.500231643921107 1 0.999536712157785 hm5C_site_22856 DeepMRMD:1;iRNA_m5C:0.999536712157785 22857 chr11 47600867 47600867 1 + C T DLBC 47600875 + 47600855 47600895 41 GAGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG GAGGCGGGAGAGTGCCGGGGCCGACACGCGCCGTGAGTATG < 41bp 1 0.0901457766753647 1 0.126409322023392 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600875 chr11:47600867 synonymous SNV . 0 13 hm5C_associated_SNPs_21879 0 0 1 0 2 Ribosome 1 0.500231643921098 1 0.999536712157804 hm5C_site_22857 DeepMRMD:1;iRNA_m5C:0.999536712157804 22858 chr11 47600867 47600867 1 + C T DLBC 47600885 + 47600865 47600905 41 AGCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGC AGTGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGC < 41bp 1 0.292460624938251 1 0.0927632749080658 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600885 chr11:47600867 synonymous SNV . 0 3 hm5C_associated_SNPs_21881 0 0 1 0 2 Ribosome 1 0.500231643921787 1 0.999536712156427 hm5C_site_22858 DeepMRMD:1;iRNA_m5C:0.999536712156427 22859 chr7 33014897 33014897 1 + G A DLBC 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCCCCCAAGTTGCCCTCG < 41bp 1 0.522378243752995 1 0.765441238880157 experiment 0.95524351249401 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014897 synonymous SNV . 0 30 hm5C_associated_SNPs_21883 0 0 0 0 1 Ribosome 1 0.500231643912526 0.469117522239686 0.999536712174948 hm5C_site_22859 DeepMRMD:0.469117522239686;iRNA_m5C:0.999536712174948 22860 chr7 33014897 33014897 1 + G A DLBC 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCCCCCAAGTTGCCCTCGGACC < 41bp 1 0.0625762374516001 1 0.0628682374954224 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014897 synonymous SNV . 0 26 hm5C_associated_SNPs_21884 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22860 DeepMRMD:1;iRNA_m5C:0.999536712157815 22861 chr2 202141597 202141597 1 + T A DLBC 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTGACTGATCATCAACAATCA < 41bp 1 0.377242378943362 1 0.228742122650146 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141597 stopgain 0.993 0 24 hm5C_associated_SNPs_21885 0 0 1 1 1 Nucleus 1 0.500231852904229 1 0.999536294191542 hm5C_site_22861 DeepMRMD:1;iRNA_m5C:0.999536294191542 22862 chr2 109367754 109367754 1 + C T DLBC 109367752 + 109367732 109367772 41 CACATAATGGTAGTCTTCAGCACCTTACTTGGCTTGGCTTA CACATAATGGTAGTCTTCAGCATCTTACTTGGCTTGGCTTA < 41bp 1 0.121355272882988 1 0.233026504516602 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109367752 chr2:109367754 synonymous SNV . 0 23 hm5C_associated_SNPs_21886 0 0 0 0 1 Nucleus 1 0.500231643815891 1 0.999536712368217 hm5C_site_22862 DeepMRMD:1;iRNA_m5C:0.999536712368217 22863 chr22 26291160 26291160 1 + G A DLBC 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATA < 41bp 1 0.0888763790093249 1 0.341787844896317 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291160 nonsynonymous SNV 0.999 0 41 hm5C_associated_SNPs_21887 0 0 1 0 3 chromatin 1 0.500264924057379 1 0.999470151885242 hm5C_site_22863 DeepMRMD:1;iRNA_m5C:0.999470151885242 22864 chr5 82834316 82834316 1 + T C DLBC 82834308 + 82834288 82834328 41 CACTCTCCCACGTAGTCCTGCCTCTGTCTTTATGGAGCAGG CACTCTCCCACGTAGTCCTGCCTCTGTCCTTATGGAGCAGG < 41bp 1 0.0194321130416327 1 0.0511967241764069 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82834308 chr5:82834316 nonsynonymous SNV 0.010 0 29 hm5C_associated_SNPs_21888 0 0 1 0 0 Ribosome 1 0.500231644075726 1 0.999536711848549 hm5C_site_22864 DeepMRMD:1;iRNA_m5C:0.999536711848549 22865 chr4 155665953 155665953 1 + A C DLBC 155665967 + 155665947 155665987 41 CTGTGGAACAACTGCGAGCACTTCGTGACCTACTGCAGATA CTGTGGCACAACTGCGAGCACTTCGTGACCTACTGCAGATA < 41bp 1 0.356251098487465 1 0.104438066482544 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRAT ENSG00000121207 CDS Human protein_coding chr4:155665967 chr4:155665953 nonsynonymous SNV 0.998 1 7 hm5C_associated_SNPs_21889 0 0 0 0 1 Nucleus 1 0.500229011860599 1 0.999541976278802 hm5C_site_22865 DeepMRMD:1;iRNA_m5C:0.999541976278802 22866 chr1 22835092 22835092 1 + G T DLBC 22835072 + 22835052 22835092 41 TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAG TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAT < 41bp 1 0.404460496027855 1 0.559640944004059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22835072 chr1:22835092 stopgain 0.997 1 41 hm5C_associated_SNPs_21890 0 0 1 0 1 Nucleus 1 0.500231643928673 0.880718111991882 0.999536712142654 hm5C_site_22866 DeepMRMD:0.880718111991882;iRNA_m5C:0.999536712142654 22867 chr15 29346718 29346718 1 + C T DLBC 29346702 + 29346682 29346722 41 GAGGAGGCCAACGGGAACACCGGCGCCTCCCCCTACCGCCT GAGGAGGCCAACGGGAACACCGGCGCCTCCCCCTACTGCCT < 41bp 1 0.675464438649119 1 0.688099086284637 experiment 0.649071122701762 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control APBA2 ENSG00000034053 CDS Human protein_coding chr15:29346702 chr15:29346718 nonsynonymous SNV 0.380 2 37 hm5C_associated_SNPs_21892 0 0 1 0 0 Cytosol 1 0.500231643921094 0.623801827430726 0.999536712157812 hm5C_site_22867 DeepMRMD:0.623801827430726;iRNA_m5C:0.999536712157812 22868 chr20 62521256 62521256 1 + G A DLBC 62521246 + 62521226 62521266 41 GAACGGCAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG GAACGGCAGTGACAACCTCCCTTCCTCAGCAGGGAGTGGTG < 41bp 1 0.255565573749034 1 0.0535944104194641 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62521246 chr20:62521256 synonymous SNV 0.004 0 31 hm5C_associated_SNPs_21893 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22868 DeepMRMD:1;iRNA_m5C:0.999536712157815 22869 chr1 155288031 155288031 1 + C T DLBC 155288044 + 155288024 155288064 41 TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG TGAAGCTTTATTGCCGGGAGCAGCCCTATTACCTGAACCTG < 41bp 1 0.302804959387091 1 0.216095685958862 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155288044 chr1:155288031 synonymous SNV . 0 8 hm5C_associated_SNPs_21894 0 0 1 0 2 Cytosol 1 0.500231643932009 1 0.999536712135982 hm5C_site_22869 DeepMRMD:1;iRNA_m5C:0.999536712135982 22870 chr10 60549152 60549152 1 + G A DLBC 60549151 + 60549131 60549171 41 TTTCAGTATCATTTAAACAGCGTTCCCGAATGTATGGTGCT TTTCAGTATCATTTAAACAGCATTCCCGAATGTATGGTGCT < 41bp 1 0.00963085707602562 1 0.0253060758113861 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60549151 chr10:60549152 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_21895 0 0 1 0 1 nucleus 1 0.500231643915063 1 0.999536712169875 hm5C_site_22870 DeepMRMD:1;iRNA_m5C:0.999536712169875 22871 chr22 26242205 26242205 1 + C T DLBC 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCTGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC < 41bp 1 0.307250864998261 1 0.202112942934036 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242205 synonymous SNV . 0 4 hm5C_associated_SNPs_21896 0 0 0 0 1 chromatin 1 0.500231642563615 1 0.999536714872769 hm5C_site_22871 DeepMRMD:1;iRNA_m5C:0.999536714872769 22872 chr5 66462608 66462608 1 + A G DLBC 66462588 + 66462568 66462608 41 CTGCCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACA CTGCCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACG < 41bp 1 0.113191844258833 1 0.023631751537323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462588 chr5:66462608 nonsynonymous SNV 0.013 1 41 hm5C_associated_SNPs_21897 0 0 0 0 0 Cytosol 1 0.50023164463633 1 0.99953671072734 hm5C_site_22872 DeepMRMD:1;iRNA_m5C:0.99953671072734 22873 chr5 66462608 66462608 1 + A G DLBC 66462590 + 66462570 66462610 41 GCCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACC GCCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACGCC < 41bp 1 0.0768560951446971 1 0.0664201378822327 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462590 chr5:66462608 nonsynonymous SNV 0.013 1 39 hm5C_associated_SNPs_21898 0 0 0 0 0 Cytosol 1 0.50023172201701 1 0.999536555965981 hm5C_site_22873 DeepMRMD:1;iRNA_m5C:0.999536555965981 22874 chr5 66462608 66462608 1 + A G DLBC 66462591 + 66462571 66462611 41 CCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCA CCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACGCCA < 41bp 1 0.051356917997837 1 0.362971305847168 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462591 chr5:66462608 nonsynonymous SNV 0.013 1 38 hm5C_associated_SNPs_21899 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22874 DeepMRMD:1;iRNA_m5C:0.999536712157815 22875 chr5 66462608 66462608 1 + A G DLBC 66462592 + 66462572 66462612 41 CCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCAC CCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACGCCAC < 41bp 1 0.292618224288943 1 0.312677502632141 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462592 chr5:66462608 nonsynonymous SNV 0.013 1 37 hm5C_associated_SNPs_21900 0 0 0 0 0 Cytosol 1 0.500231849164584 1 0.999536301670832 hm5C_site_22875 DeepMRMD:1;iRNA_m5C:0.999536301670832 22876 chr5 66462608 66462608 1 + A G DLBC 66462595 + 66462575 66462615 41 CCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCACCCC CCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACGCCACCCC < 41bp 1 0.0540427623611866 1 0.0546863675117493 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462595 chr5:66462608 nonsynonymous SNV 0.013 1 34 hm5C_associated_SNPs_21901 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22876 DeepMRMD:1;iRNA_m5C:0.999536712157815 22877 chr5 66462608 66462608 1 + A G DLBC 66462596 + 66462576 66462616 41 CTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCACCCCG CTTCCGGGTCTCCACCCTGCCTCTGGAGTCACGCCACCCCG < 41bp 1 0.393362602054235 1 0.174368590116501 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462596 chr5:66462608 nonsynonymous SNV 0.013 1 33 hm5C_associated_SNPs_21902 0 0 0 0 0 Cytosol 1 0.500231641794683 1 0.999536716410635 hm5C_site_22877 DeepMRMD:1;iRNA_m5C:0.999536716410635 22878 chr7 102937911 102937911 1 + C T DLBC 102937920 + 102937900 102937940 41 AGCAGAAATGGCGGCTGCGGCGGCTCGAGTGGTGTTGTCAT AGCAGAAATGGTGGCTGCGGCGGCTCGAGTGGTGTTGTCAT < 41bp 1 0.659003044488857 1 0.760976493358612 experiment 0.681993911022285 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PMPCB ENSG00000105819 CDS Human protein_coding chr7:102937920 chr7:102937911 nonsynonymous SNV 0.755 1 12 hm5C_associated_SNPs_21904 0 0 1 0 1 Ribosome 1 0.500231874970354 0.478047013282776 0.999536250059292 hm5C_site_22878 DeepMRMD:0.478047013282776;iRNA_m5C:0.999536250059292 22879 chr6 30692031 30692031 1 + T C DLBC 30692018 + 30691998 30692038 41 GCCATGTTCCGCCGGAAGGCCTTCCTCCACTGGTACACAGG GCCATGTTCCGCCGGAAGGCCTTCCTCCACTGGCACACAGG < 41bp 1 0.141489111978739 1 0.149021357297897 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TUBB ENSG00000196230 CDS Human protein_coding chr6:30692018 chr6:30692031 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_21905 0 0 1 0 0 Cytosol 1 0.500231643921086 1 0.999536712157827 hm5C_site_22879 DeepMRMD:1;iRNA_m5C:0.999536712157827 22880 chr6 30692031 30692031 1 + T C DLBC 30692022 + 30692002 30692042 41 TGTTCCGCCGGAAGGCCTTCCTCCACTGGTACACAGGCGAG TGTTCCGCCGGAAGGCCTTCCTCCACTGGCACACAGGCGAG < 41bp 1 0.689397838616842 1 0.988452434539795 experiment 0.621204322766315 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBB ENSG00000196230 CDS Human protein_coding chr6:30692022 chr6:30692031 nonsynonymous SNV 0.999 4 30 hm5C_associated_SNPs_21906 0 0 1 0 0 Cytosol 1 0.500231643923862 0.0230951309204099 0.999536712152275 hm5C_site_22880 DeepMRMD:0.0230951309204099;iRNA_m5C:0.999536712152275 22881 chr6 29910609 29910609 1 + G T DLBC 29910604 + 29910584 29910624 41 GGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACAC GGGGAGCCCCGCTTCATCGCCGTGGTCTACGTGGACGACAC < 41bp 1 0.619642677587939 1 0.49171108007431 experiment 0.760714644824121 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29910604 chr6:29910609 nonsynonymous SNV 0.742 3 26 hm5C_associated_SNPs_21907 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643906459 1 0.999536712187083 hm5C_site_22881 DeepMRMD:1;iRNA_m5C:0.999536712187083 22882 chr4 103806567 103806567 1 + A T DLBC 103806576 + 103806556 103806596 41 CAGCTTATTGTAGGTGTTGGCGTTCTAAAACGGTAAGATGT CAGCTTATTGTTGGTGTTGGCGTTCTAAAACGGTAAGATGT < 41bp 1 0.0770756279908166 1 0.483580112457275 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CISD2 ENSG00000145354 CDS Human protein_coding chr4:103806576 chr4:103806567 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_21908 0 0 1 0 1 Ribosome 1 0.50023164017286 1 0.999536719654279 hm5C_site_22882 DeepMRMD:1;iRNA_m5C:0.999536719654279 22883 chr5 177565199 177565199 1 + C T DLBC 177565214 + 177565194 177565234 41 GTGAGCGGAGCCTGGAGGAGCTGCTGCACTACGTGGGCCAG GTGAGTGGAGCCTGGAGGAGCTGCTGCACTACGTGGGCCAG < 41bp 1 0.687121459801304 1 0.286632239818573 experiment 0.625757080397393 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RMND5B ENSG00000145916 CDS Human protein_coding chr5:177565214 chr5:177565199 nonsynonymous SNV 0.974 3 6 hm5C_associated_SNPs_21909 0 0 1 0 1 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_22883 DeepMRMD:1;iRNA_m5C:0.99953671215782 22884 chr17 3572623 3572623 1 + G A DLBC 3572638 + 3572618 3572658 41 GTCCTGCTCTCCCTGCTCCTCATTCTCAAGGCGGGAAGGAG GTCCTACTCTCCCTGCTCCTCATTCTCAAGGCGGGAAGGAG < 41bp 1 0.12135949186907 1 0.0597103834152222 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMC6 ENSG00000127774 CDS Human protein_coding chr17:3572638 chr17:3572623 synonymous SNV . 0 6 hm5C_associated_SNPs_21910 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22884 DeepMRMD:1;iRNA_m5C:0.999536712157815 22885 chr13 39454750 39454750 1 + C T DLBC 39454741 + 39454721 39454761 41 AACAGCCCCAGCTCTGCAGTCAGCCTGGTCACTGTGGTGGG AACAGCCCCAGCTCTGCAGTCAGCCTGGTTACTGTGGTGGG < 41bp 1 0.171981167647253 1 0.229858100414276 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FREM2 ENSG00000150893 CDS Human protein_coding chr13:39454741 chr13:39454750 synonymous SNV . 0 30 hm5C_associated_SNPs_21911 0 0 0 0 0 exosome 1 0.500231643921097 1 0.999536712157807 hm5C_site_22885 DeepMRMD:1;iRNA_m5C:0.999536712157807 22886 chr17 79663744 79663744 1 + G A DLBC 79663761 + 79663741 79663781 41 CGCGCAGATGCCCGCCTTCCCCCTGCCCTACGCCCAGGCAT CGCACAGATGCCCGCCTTCCCCCTGCCCTACGCCCAGGCAT < 41bp 1 0.360112835837873 1 0.28675240278244 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663761 chr17:79663744 synonymous SNV . 0 4 hm5C_associated_SNPs_21912 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22886 DeepMRMD:1;iRNA_m5C:0.999536712157815 22887 chr11 8016899 8016899 1 + C G DLBC 8016893 + 8016873 8016913 41 GTTCCCGATGACTTTGAGACCATGCTCAACAGCAACATCAA GTTCCCGATGACTTTGAGACCATGCTGAACAGCAACATCAA < 41bp 1 0.211225570492905 1 0.153440296649933 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3F ENSG00000175390 CDS Human protein_coding chr11:8016893 chr11:8016899 synonymous SNV . 0 27 hm5C_associated_SNPs_21913 0 0 1 0 2 Nucleus 1 0.500231723017909 1 0.999536553964181 hm5C_site_22887 DeepMRMD:1;iRNA_m5C:0.999536553964181 22888 chr19 39948337 39948337 1 + C T DLBC 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAGTATGAGGATGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.256774489466289 1 0.108244180679321 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948337 synonymous SNV . 0 15 hm5C_associated_SNPs_21914 0 0 1 0 2 Nucleus 1 0.500231643933281 1 0.999536712133438 hm5C_site_22888 DeepMRMD:1;iRNA_m5C:0.999536712133438 22889 chr19 39948337 39948337 1 + C T DLBC 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAGTATGAGGATGAGGACCAGTGGGAGGATGGAGCAGAG < 41bp 1 0.509985891527622 1 0.328000962734222 experiment 0.980028216944756 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948337 synonymous SNV . 0 14 hm5C_associated_SNPs_21915 0 0 1 0 2 Nucleus 1 0.500231645963584 1 0.999536708072833 hm5C_site_22889 DeepMRMD:1;iRNA_m5C:0.999536708072833 22890 chr1 248039254 248039254 1 + C T DLBC 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGCTGACCTGCGCAGTGTGCA < 41bp 1 0.50063761700264 1 0.207221150398254 experiment 0.99872476599472 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039254 synonymous SNV . 0 24 hm5C_associated_SNPs_21916 0 0 0 0 2 Cytosol 1 0.500233359985301 1 0.999533280029397 hm5C_site_22890 DeepMRMD:1;iRNA_m5C:0.999533280029397 22891 chr15 68583506 68583506 1 + G A DLBC 68583493 + 68583473 68583513 41 ATGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCG ATGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAACAGTTCG < 41bp 1 0.187077424078118 1 0.116756469011307 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583493 chr15:68583506 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_21918 0 0 1 0 0 Ribosome 1 0.500231563162349 1 0.999536873675302 hm5C_site_22891 DeepMRMD:1;iRNA_m5C:0.999536873675302 22892 chr15 68583506 68583506 1 + G A DLBC 68583494 + 68583474 68583514 41 TGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGG TGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAACAGTTCGG < 41bp 1 0.44099489678101 1 0.426359385251999 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583494 chr15:68583506 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_21919 0 0 1 0 0 Ribosome 1 0.50023164268017 1 0.99953671463966 hm5C_site_22892 DeepMRMD:1;iRNA_m5C:0.99953671463966 22893 chr15 68583506 68583506 1 + G A DLBC 68583501 + 68583481 68583521 41 GAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGGGCTAATG GAGTCTCAAGTGCCTGGCTGCCCGAACAGTTCGGGCTAATG < 41bp 1 0.275979455092599 1 0.195827424526215 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583501 chr15:68583506 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_21920 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22893 DeepMRMD:1;iRNA_m5C:0.999536712157815 22894 chr15 68583506 68583506 1 + G A DLBC 68583502 + 68583482 68583522 41 AGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGGGCTAATGA AGTCTCAAGTGCCTGGCTGCCCGAACAGTTCGGGCTAATGA < 41bp 1 0.520840622796732 1 0.479408979415894 experiment 0.958318754406536 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583502 chr15:68583506 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_21921 0 0 1 0 0 Ribosome 1 0.500231644039387 1 0.999536711921227 hm5C_site_22894 DeepMRMD:1;iRNA_m5C:0.999536711921227 22895 chr15 68583506 68583506 1 + G A DLBC 68583503 + 68583483 68583523 41 GTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGGGCTAATGAC GTCTCAAGTGCCTGGCTGCCCGAACAGTTCGGGCTAATGAC < 41bp 1 0.319873110484872 1 0.416632652282715 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583503 chr15:68583506 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_21922 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22895 DeepMRMD:1;iRNA_m5C:0.999536712157815 22896 chr15 68583506 68583506 1 + G A DLBC 68583507 + 68583487 68583527 41 CAAGTGCCTGGCTGCCCGAGCAGTTCGGGCTAATGACATTA CAAGTGCCTGGCTGCCCGAACAGTTCGGGCTAATGACATTA < 41bp 1 0.193559104703427 1 0.0499288439750671 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583507 chr15:68583506 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_21923 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22896 DeepMRMD:1;iRNA_m5C:0.999536712157815 22897 chr3 47385186 47385186 1 + G A DLBC 47385197 + 47385177 47385217 41 CTCAGCATTGCCGAGATGTACAGCTCTGTGGCAGACCAGTG CTCAGCATTACCGAGATGTACAGCTCTGTGGCAGACCAGTG < 41bp 1 0.414297216565819 1 0.0982494652271271 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47385197 chr3:47385186 nonsynonymous SNV 0.830 2 10 hm5C_associated_SNPs_21926 0 0 1 0 0 Cytosol 1 0.500231643921117 1 0.999536712157767 hm5C_site_22897 DeepMRMD:1;iRNA_m5C:0.999536712157767 22898 chr15 45427482 45427482 1 + G A DLBC 45427487 + 45427467 45427507 41 GTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGGCGG GTCCCAGCAATCCCCAGGACCCGGTGAGGCGGGGAAGGCGG < 41bp 1 0.442421700132191 1 0.500493764877319 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427487 chr15:45427482 nonsynonymous SNV 0.989 4 16 hm5C_associated_SNPs_21927 0 0 0 0 1 chromatin 1 0.500231643919701 0.999012470245362 0.999536712160599 hm5C_site_22898 DeepMRMD:0.999012470245362;iRNA_m5C:0.999536712160599 22899 chr1 24996752 24996752 1 + A T DLBC 24996751 + 24996731 24996771 41 ACCGTCTACAAACTGGTCACCAGCTGTACCGGTCAAAAAGG ACCGTCTACAAACTGGTCACCTGCTGTACCGGTCAAAAAGG < 41bp 1 0.539254593309607 1 0.357609987258911 experiment 0.921490813380787 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996751 chr1:24996752 synonymous SNV . 0 22 hm5C_associated_SNPs_21928 0 0 1 0 0 Cytosol 1 0.50023164392109 1 0.999536712157821 hm5C_site_22899 DeepMRMD:1;iRNA_m5C:0.999536712157821 22900 chr1 63282305 63282305 1 + G A DLBC 63282293 + 63282273 63282313 41 CGGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA CGGGATGTACAATAGAGGATCACGTAATTGCAAGAAATGTA < 41bp 1 0.439018581868937 1 0.164164960384369 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4C ENSG00000125703 CDS Human protein_coding chr1:63282293 chr1:63282305 nonsynonymous SNV 0.996 1 33 hm5C_associated_SNPs_21929 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22900 DeepMRMD:1;iRNA_m5C:0.999536712157815 22901 chr22 23523613 23523613 1 + T C DLBC 23523630 + 23523610 23523650 41 AGGTCCAACTTCGAGCGGATCCGCAAGGGCCATGGCCAGCC AGGCCCAACTTCGAGCGGATCCGCAAGGGCCATGGCCAGCC < 41bp 1 0.568779583984457 1 0.0796328186988831 experiment 0.862440832031086 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23523630 chr22:23523613 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_21930 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22901 DeepMRMD:1;iRNA_m5C:0.999536712157815 22902 chr15 65157677 65157677 1 + C G DLBC 65157697 + 65157677 65157717 41 CCCTCTCAGGCTGAGGGCACCCCAGGAACTCCTCCAAAGGA GCCTCTCAGGCTGAGGGCACCCCAGGAACTCCTCCAAAGGA < 41bp 1 0.27729655260851 1 0.199858337640762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHO2 ENSG00000241839 CDS Human protein_coding chr15:65157697 chr15:65157677 nonsynonymous SNV 0.090 0 1 hm5C_associated_SNPs_21931 0 0 0 0 0 chromatin 1 0.500231643921064 1 0.999536712157873 hm5C_site_22902 DeepMRMD:1;iRNA_m5C:0.999536712157873 22903 chrX 41075218 41075218 1 + T G DLBC 41075229 + 41075209 41075249 41 CTAAAGCGATTTGACTATGACTGGGAAAGAGAATGTGCAAT CTAAAGCGAGTTGACTATGACTGGGAAAGAGAATGTGCAAT < 41bp 1 0.381763376502144 1 0.269764184951782 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41075229 chrX:41075218 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_21932 0 0 1 0 1 Nucleus 1 0.500231643921112 1 0.999536712157776 hm5C_site_22903 DeepMRMD:1;iRNA_m5C:0.999536712157776 22904 chr8 128751156 128751156 1 + C T ESCA 128751167 + 128751147 128751187 41 CAGCGCCTTCTCTCCGTCCTCGGATTCTCTGCTCTCCTCGA CAGCGCCTTTTCTCCGTCCTCGGATTCTCTGCTCTCCTCGA < 41bp 1 0.597610930316552 1 0.839241206645966 experiment 0.804778139366896 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MYC ENSG00000136997 CDS Human protein_coding chr8:128751167 chr8:128751156 synonymous SNV . 0 10 hm5C_associated_SNPs_21933 0 0 1 0 0 Cytosol 1 0.500231644631049 0.321517586708068 0.999536710737903 hm5C_site_22904 DeepMRMD:0.321517586708068;iRNA_m5C:0.999536710737903 22905 chr8 92090650 92090650 1 + A G ESCA 92090658 + 92090638 92090678 41 ATTGAAAACTTAACAGGAGCCAGACATATGGAAAGTGAGAA ATTGAAAACTTAGCAGGAGCCAGACATATGGAAAGTGAGAA < 41bp 1 0.546396978854764 1 0.616359889507294 experiment 0.907206042290472 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92090658 chr8:92090650 nonsynonymous SNV 0.979 0 13 hm5C_associated_SNPs_21934 0 0 1 0 1 Ribosome 1 0.500231643928793 0.767280220985412 0.999536712142413 hm5C_site_22905 DeepMRMD:0.767280220985412;iRNA_m5C:0.999536712142413 22906 chr8 98837299 98837299 1 + G A ESCA 98837312 + 98837292 98837332 41 TTGATTAGCTGTGTTTGGAACTGCTACCGATACATCAATGG TTGATTAACTGTGTTTGGAACTGCTACCGATACATCAATGG < 41bp 1 0.21089162907845 1 0.0541039109230042 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAPTM4B ENSG00000104341 CDS Human protein_coding chr8:98837312 chr8:98837299 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_21935 0 0 1 0 1 Ribosome 1 0.500231688642602 1 0.999536622714796 hm5C_site_22906 DeepMRMD:1;iRNA_m5C:0.999536622714796 22907 chr7 4824612 4824612 1 + G A ESCA 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCACCCCGGGA < 41bp 1 0.12181379480591 1 0.201610207557678 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824612 synonymous SNV . 0 33 hm5C_associated_SNPs_21936 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_22907 DeepMRMD:1;iRNA_m5C:0.999536712157815 22908 chr7 4824612 4824612 1 + G A ESCA 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCCGGCCGCCTGCTGCCACCCCGGGAGCGGCTTCGG < 41bp 1 0.0998877309591912 1 0.124804854393005 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824612 synonymous SNV . 0 23 hm5C_associated_SNPs_21937 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_22908 DeepMRMD:1;iRNA_m5C:0.999536712157814 22909 chr16 2814594 2814594 1 + G C ESCA 2814601 + 2814581 2814621 41 TTAAAGAAGATTTGAATGGACCGTTTCTTAATCAGCTGGAA TTAAAGAAGATTTCAATGGACCGTTTCTTAATCAGCTGGAA < 41bp 1 0.025673494021465 1 0.0326643288135529 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2814601 chr16:2814594 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_21938 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_22909 DeepMRMD:1;iRNA_m5C:0.999536712157815 22910 chr16 2814594 2814594 1 + G C ESCA 2814613 + 2814593 2814633 41 TGAATGGACCGTTTCTTAATCAGCTGGAAACAGATCCATCT TCAATGGACCGTTTCTTAATCAGCTGGAAACAGATCCATCT < 41bp 1 0.302761087895637 1 0.825268268585205 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2814613 chr16:2814594 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_21939 0 0 1 0 0 Nucleus 1 0.500231643921091 0.34946346282959 0.999536712157817 hm5C_site_22910 DeepMRMD:0.34946346282959;iRNA_m5C:0.999536712157817 22911 chr3 148562324 148562324 1 + T G ESCA 148562304 + 148562284 148562324 41 GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTT GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTG < 41bp 1 0.109858657767263 1 0.0925153493881226 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562304 chr3:148562324 nonsynonymous SNV 0.991 4 41 hm5C_associated_SNPs_21941 0 0 0 0 2 exosome 1 0.500231644080555 1 0.999536711838891 hm5C_site_22911 DeepMRMD:1;iRNA_m5C:0.999536711838891 22912 chr3 148562324 148562324 1 + T G ESCA 148562307 + 148562287 148562327 41 AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTAT AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTGTAT < 41bp 1 0.672896465396387 1 0.751876413822174 experiment 0.654207069207226 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562307 chr3:148562324 nonsynonymous SNV 0.991 4 38 hm5C_associated_SNPs_21942 0 0 0 0 2 exosome 1 0.500231643843161 0.496247172355652 0.999536712313678 hm5C_site_22912 DeepMRMD:0.496247172355652;iRNA_m5C:0.999536712313678 22913 chr3 148562324 148562324 1 + T G ESCA 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTCGACAAGTTAGACTTGTATGTCCT < 41bp 1 0.423878539874253 1 0.10693234205246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562324 nonsynonymous SNV 0.991 4 33 hm5C_associated_SNPs_21944 0 0 0 0 2 exosome 1 0.500214438524658 1 0.999571122950683 hm5C_site_22913 DeepMRMD:1;iRNA_m5C:0.999571122950683 22914 chr3 148562324 148562324 1 + T G ESCA 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTCGACAAGTTAGACTTGTATGTCCTGCCTGTGCT < 41bp 1 0.352239524245264 1 0.0325766205787659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562324 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_21945 0 0 0 0 2 exosome 1 0.500231643905481 1 0.999536712189038 hm5C_site_22914 DeepMRMD:1;iRNA_m5C:0.999536712189038 22915 chr3 148562324 148562324 1 + T G ESCA 148562330 + 148562310 148562350 41 GACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA GACAAGTTAGACTTGTATGTCCTGCCTGTGCTCAATATTGA < 41bp 1 0.0861878051601267 1 0.0413023829460144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562330 chr3:148562324 nonsynonymous SNV 0.991 4 15 hm5C_associated_SNPs_21946 0 0 0 0 2 exosome 1 0.500231643899307 1 0.999536712201386 hm5C_site_22915 DeepMRMD:1;iRNA_m5C:0.999536712201386 22916 chr3 148562324 148562324 1 + T G ESCA 148562331 + 148562311 148562351 41 ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAT ACAAGTTAGACTTGTATGTCCTGCCTGTGCTCAATATTGAT < 41bp 1 0.261172597326754 1 0.0919526219367981 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562331 chr3:148562324 nonsynonymous SNV 0.991 4 14 hm5C_associated_SNPs_21947 0 0 0 0 2 exosome 1 0.500231604410008 1 0.999536791179984 hm5C_site_22916 DeepMRMD:1;iRNA_m5C:0.999536791179984 22917 chr3 148562324 148562324 1 + T G ESCA 148562334 + 148562314 148562354 41 AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGC AGTTAGACTTGTATGTCCTGCCTGTGCTCAATATTGATGGC < 41bp 1 0.123823371350544 1 0.0687502026557922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562334 chr3:148562324 nonsynonymous SNV 0.991 4 11 hm5C_associated_SNPs_21948 0 0 0 0 2 exosome 1 0.500231703304356 1 0.999536593391288 hm5C_site_22917 DeepMRMD:1;iRNA_m5C:0.999536593391288 22918 chr3 148562324 148562324 1 + T G ESCA 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGACTTGTATGTCCTGCCTGTGCTCAATATTGATGGCT < 41bp 1 0.40164731595463 1 0.314592659473419 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562324 nonsynonymous SNV 0.991 4 10 hm5C_associated_SNPs_21949 0 0 0 0 2 exosome 1 0.500231890744179 1 0.999536218511643 hm5C_site_22918 DeepMRMD:1;iRNA_m5C:0.999536218511643 22919 chr3 148562324 148562324 1 + T G ESCA 148562342 + 148562322 148562362 41 TTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA TTGTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA < 41bp 1 0.627686278959274 1 0.200549989938736 experiment 0.744627442081453 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562342 chr3:148562324 nonsynonymous SNV 0.991 4 3 hm5C_associated_SNPs_21950 0 0 0 0 2 exosome 1 0.50023175103429 1 0.99953649793142 hm5C_site_22919 DeepMRMD:1;iRNA_m5C:0.99953649793142 22920 chr17 4926854 4926854 1 + G A ESCA 4926871 + 4926851 4926891 41 ACCGCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCA ACCACATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCA < 41bp 1 0.0710061756540799 1 0.0309507846832275 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926871 chr17:4926854 nonsynonymous SNV 0.006 0 4 hm5C_associated_SNPs_21951 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_22920 DeepMRMD:1;iRNA_m5C:0.999536712157814 22921 chr17 4926854 4926854 1 + G A ESCA 4926874 + 4926854 4926894 41 GCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGC ACATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGC < 41bp 1 0.080146948365823 1 0.0328373312950134 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926874 chr17:4926854 nonsynonymous SNV 0.006 0 1 hm5C_associated_SNPs_21952 0 0 1 0 1 Ribosome 1 0.500238298713256 1 0.999523402573488 hm5C_site_22921 DeepMRMD:1;iRNA_m5C:0.999523402573488 22922 chr1 24996716 24996716 1 + C A ESCA 24996696 + 24996676 24996716 41 CTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCC CTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCA < 41bp 1 0.351946401322481 1 0.10504737496376 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996696 chr1:24996716 synonymous SNV . 0 41 hm5C_associated_SNPs_21953 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22922 DeepMRMD:1;iRNA_m5C:0.999536712157815 22923 chr1 24996716 24996716 1 + C A ESCA 24996697 + 24996677 24996717 41 TGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCG TGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCAG < 41bp 1 0.693072561169752 1 0.164821714162827 experiment 0.613854877660496 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996697 chr1:24996716 synonymous SNV . 0 40 hm5C_associated_SNPs_21954 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22923 DeepMRMD:1;iRNA_m5C:0.999536712157815 22924 chr1 24996716 24996716 1 + C A ESCA 24996698 + 24996678 24996718 41 GAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGT GAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCAGT < 41bp 1 0.1675059440821 1 0.166186183691025 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996698 chr1:24996716 synonymous SNV . 0 39 hm5C_associated_SNPs_21955 0 0 1 0 0 Cytosol 1 0.500231643921091 1 0.999536712157819 hm5C_site_22924 DeepMRMD:1;iRNA_m5C:0.999536712157819 22925 chr1 24996716 24996716 1 + C A ESCA 24996703 + 24996683 24996723 41 AGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGT AGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCAGTCCAGT < 41bp 1 0.213719122847814 1 0.108638107776642 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996703 chr1:24996716 synonymous SNV . 0 34 hm5C_associated_SNPs_21956 0 0 1 0 0 Cytosol 1 0.500231643921112 1 0.999536712157776 hm5C_site_22925 DeepMRMD:1;iRNA_m5C:0.999536712157776 22926 chr1 24996716 24996716 1 + C A ESCA 24996705 + 24996685 24996725 41 CAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCT CAGCTAAAAAGCCCCCAGCACCTCCATCCCCAGTCCAGTCT < 41bp 1 0.0528500640683693 1 0.0161938965320587 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996705 chr1:24996716 synonymous SNV . 0 32 hm5C_associated_SNPs_21957 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22926 DeepMRMD:1;iRNA_m5C:0.999536712157815 22927 chr1 24996716 24996716 1 + C A ESCA 24996709 + 24996689 24996729 41 TAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCTCAGT TAAAAAGCCCCCAGCACCTCCATCCCCAGTCCAGTCTCAGT < 41bp 1 0.0542656870700455 1 0.103119432926178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996709 chr1:24996716 synonymous SNV . 0 28 hm5C_associated_SNPs_21958 0 0 1 0 0 Cytosol 1 0.50023164392108 1 0.99953671215784 hm5C_site_22927 DeepMRMD:1;iRNA_m5C:0.99953671215784 22928 chr17 62223488 62223488 1 + G T ESCA 62223469 + 62223449 62223489 41 ATGACATTCCAATTAAAGCACGTGTTAGACTGCTGACGCGG ATGACATTCCAATTAAAGCACGTGTTAGACTGCTGACGCTG < 41bp 1 0.388667443523564 1 0.166543364524841 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223469 chr17:62223488 . . 0 40 hm5C_associated_SNPs_21959 0 0 1 1 0 unknown 1 0.500231615278854 1 0.999536769442291 hm5C_site_22928 DeepMRMD:1;iRNA_m5C:0.999536769442291 22929 chr17 62223488 62223488 1 + G T ESCA 62223481 + 62223461 62223501 41 TTAAAGCACGTGTTAGACTGCTGACGCGGGTGATGCGAACT TTAAAGCACGTGTTAGACTGCTGACGCTGGTGATGCGAACT < 41bp 1 0.311704372759577 1 0.172475814819336 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223481 chr17:62223488 . . 0 28 hm5C_associated_SNPs_21960 0 0 1 1 0 unknown 1 0.50155588761606 1 0.996888224767879 hm5C_site_22929 DeepMRMD:1;iRNA_m5C:0.996888224767879 22930 chr17 62223488 62223488 1 + G T ESCA 62223485 + 62223465 62223505 41 AGCACGTGTTAGACTGCTGACGCGGGTGATGCGAACTGGAG AGCACGTGTTAGACTGCTGACGCTGGTGATGCGAACTGGAG < 41bp 1 0.539776241493654 1 0.138917505741119 experiment 0.920447517012692 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223485 chr17:62223488 . . 0 24 hm5C_associated_SNPs_21961 0 0 1 1 0 unknown 1 0.500231024065591 1 0.999537951868817 hm5C_site_22930 DeepMRMD:1;iRNA_m5C:0.999537951868817 22931 chr17 62223488 62223488 1 + G T ESCA 62223496 + 62223476 62223516 41 GACTGCTGACGCGGGTGATGCGAACTGGAGTCTGAGCCTGC GACTGCTGACGCTGGTGATGCGAACTGGAGTCTGAGCCTGC < 41bp 1 0.395850369836482 1 0.316812306642532 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223496 chr17:62223488 . . 0 13 hm5C_associated_SNPs_21962 0 0 1 1 0 unknown 1 0.500232453441551 1 0.999535093116898 hm5C_site_22931 DeepMRMD:1;iRNA_m5C:0.999535093116898 22932 chr14 52417395 52417395 1 + C T ESCA 52417401 + 52417381 52417421 41 TCTATCCAGCACTCCGATGGCCAGCAACAACACCGCCAGCA TCTATCCAGCACTCTGATGGCCAGCAACAACACCGCCAGCA < 41bp 1 0.324823504866521 1 0.335916757583618 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNG2 ENSG00000186469 CDS Human protein_coding chr14:52417401 chr14:52417395 nonsynonymous SNV 0.050 1 15 hm5C_associated_SNPs_21963 0 0 0 0 1 Cytosol 1 0.500231643586567 1 0.999536712826866 hm5C_site_22932 DeepMRMD:1;iRNA_m5C:0.999536712826866 22933 chr12 57627884 57627884 1 + A G ESCA 57627865 + 57627845 57627885 41 TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGAG TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGGG < 41bp 1 0.244153287120526 1 0.180903285741806 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627865 chr12:57627884 nonsynonymous SNV 0.731 0 40 hm5C_associated_SNPs_21964 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22933 DeepMRMD:1;iRNA_m5C:0.999536712157815 22934 chr20 3893116 3893116 1 + G A ESCA 3893135 + 3893115 3893155 41 GGAACTTTTTTTGGTCTCTGCTGTCTTCTTACTGGCTGTAC GAAACTTTTTTTGGTCTCTGCTGTCTTCTTACTGGCTGTAC < 41bp 1 0.118244791185157 1 0.127828240394592 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PANK2 ENSG00000125779 CDS Human protein_coding chr20:3893135 chr20:3893116 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_21965 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22934 DeepMRMD:1;iRNA_m5C:0.999536712157815 22935 chrX 41198321 41198321 1 + C T ESCA 41198304 + 41198284 41198324 41 TTTAGAAGGGCGCTATATTCCTCCTCATTTAAGGAACCGAG TTTAGAAGGGCGCTATATTCCTCCTCATTTAAGGAACTGAG < 41bp 1 0.313706110648108 1 0.318354457616806 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41198304 chrX:41198321 stopgain 0.987 1 38 hm5C_associated_SNPs_21966 0 0 1 0 2 Nucleus 1 0.500231643929391 1 0.999536712141219 hm5C_site_22935 DeepMRMD:1;iRNA_m5C:0.999536712141219 22936 chr20 30526987 30526987 1 + G T ESCA 30526975 + 30526955 30526995 41 AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATTTGGAATGA < 41bp 1 0.230777494826948 1 0.0621107816696167 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30526975 chr20:30526987 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_21967 0 0 0 0 1 exosome 1 0.500231643921238 1 0.999536712157523 hm5C_site_22936 DeepMRMD:1;iRNA_m5C:0.999536712157523 22937 chr11 107966314 107966314 1 + G A ESCA 107966308 + 107966288 107966328 41 ATTTGGAGGTAACCACGTTTCAGCTCGCTGTATTGTTTGCA ATTTGGAGGTAACCACGTTTCAGCTCACTGTATTGTTTGCA < 41bp 1 0.481793966105311 1 0.554778695106506 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107966308 chr11:107966314 nonsynonymous SNV 0.994 3 27 hm5C_associated_SNPs_21968 0 0 1 0 1 Ribosome 1 0.500231643837473 0.890442609786988 0.999536712325054 hm5C_site_22937 DeepMRMD:0.890442609786988;iRNA_m5C:0.999536712325054 22938 chr22 29533461 29533461 1 + C T ESCA 29533451 + 29533431 29533471 41 ACCATCCGGGTTCCGGGGGCCTCCCACATCCACTTCAGCTT ACCATCCGGGTTCCGGGGGCCTCCCACATCTACTTCAGCTT < 41bp 1 0.185766709038133 1 0.230130076408386 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533451 chr22:29533461 nonsynonymous SNV 0.999 0 31 hm5C_associated_SNPs_21969 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_22938 DeepMRMD:1;iRNA_m5C:0.999536712157815 22939 chrX 73042914 73042914 1 + C A ESCA 73042925 - 73042905 73042945 41 GTATTTGCTCATTGGTCTGGCTTAGAGACAGGAAGACATAT GTATTTGCTCATTGGTCTGGCTTAGAGACAGTAAGACATAT < 41bp 1 0.0549498601672807 1 0.112165689468384 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042925 chrX:73042914 . . 0 32 hm5C_associated_SNPs_21970 0 0 1 1 0 unknown 1 0.50023164104457 1 0.999536717910861 hm5C_site_22939 DeepMRMD:1;iRNA_m5C:0.999536717910861 22940 chrX 73042914 73042914 1 + C A ESCA 73042929 - 73042909 73042949 41 AAAGGTATTTGCTCATTGGTCTGGCTTAGAGACAGGAAGAC AAAGGTATTTGCTCATTGGTCTGGCTTAGAGACAGTAAGAC < 41bp 1 0.168586121315147 1 0.219120562076569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042929 chrX:73042914 . . 0 36 hm5C_associated_SNPs_21971 0 0 1 1 0 unknown 1 0.500223105011038 1 0.999553789977924 hm5C_site_22940 DeepMRMD:1;iRNA_m5C:0.999553789977924 22941 chr14 105959065 105959065 1 + G T ESCA 105959051 + 105959031 105959071 41 TGGTGTCCAGTCAGCAGGAGCAGTGCGCCCTCCTGAGCAAG TGGTGTCCAGTCAGCAGGAGCAGTGCGCCCTCCTTAGCAAG < 41bp 1 0.320249277715721 1 0.26678329706192 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105959051 chr14:105959065 synonymous SNV . 0 35 hm5C_associated_SNPs_21972 0 0 0 0 1 Ribosome 1 0.500231643921089 1 0.999536712157822 hm5C_site_22941 DeepMRMD:1;iRNA_m5C:0.999536712157822 22942 chr6 27861281 27861281 1 + G A ESCA 27861272 + 27861252 27861292 41 GGCTAAATCTGCTCCTGCCCCCAAAAAGGGCTCCAAGAAAG GGCTAAATCTGCTCCTGCCCCCAAAAAGGACTCCAAGAAAG < 41bp 1 0.473490123466511 1 0.521930038928986 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIST1H2BO ENSG00000196331 CDS Human other chr6:27861272 chr6:27861281 nonsynonymous SNV 0.987 2 30 hm5C_associated_SNPs_21973 0 0 1 0 0 exosome 1 0.500231643949867 0.956139922142028 0.999536712100265 hm5C_site_22942 DeepMRMD:0.956139922142028;iRNA_m5C:0.999536712100265 22943 chr22 30416172 30416172 1 + G A ESCA 30416167 + 30416147 30416187 41 CCCTTTTGAGACCAGAGGACCAAACGTGGACAGTTCTACAG CCCTTTTGAGACCAGAGGACCAAACATGGACAGTTCTACAG < 41bp 1 0.102020462435306 1 0.211837440729141 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30416167 chr22:30416172 nonsynonymous SNV 0.002 1 26 hm5C_associated_SNPs_21974 0 0 1 0 0 Ribosome 1 0.500231643920425 1 0.999536712159149 hm5C_site_22943 DeepMRMD:1;iRNA_m5C:0.999536712159149 22944 chrX 21869646 21869646 1 + C T ESCA 21869650 + 21869630 21869670 41 CCTGGTATAAATTTACCCGTCAATCAACTGACCTATTTCTT CCTGGTATAAATTTACTCGTCAATCAACTGACCTATTTCTT < 41bp 1 0.100235592546525 1 0.0702112019062042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21869650 chrX:21869646 nonsynonymous SNV 0.997 5 17 hm5C_associated_SNPs_21975 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644052941 1 0.999536711894118 hm5C_site_22944 DeepMRMD:1;iRNA_m5C:0.999536711894118 22945 chr7 142459717 142459717 1 + A G ESCA 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATCCGCCACCCCCGATACGA < 41bp 1 0.332375890318514 1 0.104833275079727 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459717 nonsynonymous SNV 0.003 0 35 hm5C_associated_SNPs_21976 0 0 0 0 1 Cytosol 1 0.500231273602652 1 0.999537452794696 hm5C_site_22945 DeepMRMD:1;iRNA_m5C:0.999537452794696 22946 chr7 142459717 142459717 1 + A G ESCA 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATCCGCCACCCCCGATACGACAG < 41bp 1 0.312996281397155 1 0.464460045099258 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459717 nonsynonymous SNV 0.003 0 32 hm5C_associated_SNPs_21977 0 0 0 0 1 Cytosol 1 0.500231643804033 1 0.999536712391935 hm5C_site_22946 DeepMRMD:1;iRNA_m5C:0.999536712391935 22947 chr7 142459717 142459717 1 + A G ESCA 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATCCGCCACCCCCGATACGACAGGAA < 41bp 1 0.112446005434302 1 0.112465620040894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459717 nonsynonymous SNV 0.003 0 29 hm5C_associated_SNPs_21979 0 0 0 0 1 Cytosol 1 0.500231644922257 1 0.999536710155486 hm5C_site_22947 DeepMRMD:1;iRNA_m5C:0.999536710155486 22948 chr7 142459717 142459717 1 + A G ESCA 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATCCGCCACCCCCGATACGACAGGAAG < 41bp 1 0.20149402711711 1 0.148545444011688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459717 nonsynonymous SNV 0.003 0 28 hm5C_associated_SNPs_21980 0 0 0 0 1 Cytosol 1 0.50023164392687 1 0.999536712146259 hm5C_site_22948 DeepMRMD:1;iRNA_m5C:0.999536712146259 22949 chr7 142459717 142459717 1 + A G ESCA 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATCCGCCACCCCCGATACGACAGGAAGAC < 41bp 1 0.177175439566829 1 0.0658681988716125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459717 nonsynonymous SNV 0.003 0 26 hm5C_associated_SNPs_21981 0 0 0 0 1 Cytosol 1 0.500231643946151 1 0.999536712107698 hm5C_site_22949 DeepMRMD:1;iRNA_m5C:0.999536712107698 22950 chr7 142459717 142459717 1 + A G ESCA 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATCATCCGCCACCCCCGATACGACAGGAAGACT < 41bp 1 0.355340372024491 1 0.443891257047653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459717 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_21982 0 0 0 0 1 Cytosol 1 0.500231652380774 1 0.999536695238452 hm5C_site_22950 DeepMRMD:1;iRNA_m5C:0.999536695238452 22951 chr7 142459717 142459717 1 + A G ESCA 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATCCGCCACCCCCGATACGACAGGAAGACTC < 41bp 1 0.693286221244037 1 0.293168604373932 experiment 0.613427557511926 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459717 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_21983 0 0 0 0 1 Cytosol 1 0.500231643900021 1 0.999536712199958 hm5C_site_22951 DeepMRMD:1;iRNA_m5C:0.999536712199958 22952 chr7 142459717 142459717 1 + A G ESCA 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATCCGCCACCCCCGATACGACAGGAAGACTCT < 41bp 1 0.332061800539703 1 0.19916620850563 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459717 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_21984 0 0 0 0 1 Cytosol 1 0.500231681881048 1 0.999536636237904 hm5C_site_22952 DeepMRMD:1;iRNA_m5C:0.999536636237904 22953 chr7 142459717 142459717 1 + A G ESCA 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATCCGCCACCCCCGATACGACAGGAAGACTCTG < 41bp 1 0.483948895420251 1 0.136003047227859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459717 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_21985 0 0 0 0 1 Cytosol 1 0.500231643921031 1 0.999536712157939 hm5C_site_22953 DeepMRMD:1;iRNA_m5C:0.999536712157939 22954 chr7 142459717 142459717 1 + A G ESCA 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCCCCGATACGACAGGAAGACTCTGAACAATGACATCATGT < 41bp 1 0.51671172818764 1 0.204587042331696 experiment 0.96657654362472 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459717 nonsynonymous SNV 0.003 0 6 hm5C_associated_SNPs_21986 0 0 0 0 1 Cytosol 1 0.500361503776633 1 0.999276992446735 hm5C_site_22954 DeepMRMD:1;iRNA_m5C:0.999276992446735 22955 chr19 42814490 42814490 1 + A T ESCA 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCTGAGCA < 41bp 1 0.161348702947285 1 0.22471085190773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814490 synonymous SNV . 0 36 hm5C_associated_SNPs_21987 0 0 0 4 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22955 DeepMRMD:1;iRNA_m5C:0.999536712157815 22956 chr10 103919295 103919295 1 + G T ESCA 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGACGAGGAAGAGTAGCAAAAAAAACCCATGAAAAAT < 41bp 1 0.639619299988617 1 0.588473796844482 experiment 0.720761400022767 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919295 stopgain 0.597 0 18 hm5C_associated_SNPs_21988 0 0 1 0 1 Nucleus 1 0.50023164392091 0.823052406311036 0.99953671215818 hm5C_site_22956 DeepMRMD:0.823052406311036;iRNA_m5C:0.99953671215818 22957 chr11 64032910 64032910 1 + C T ESCA 64032900 + 64032880 64032920 41 CATCAGCGGAAGGCAGTCACCCTCACCCGCCGCCTGCTGGA CATCAGCGGAAGGCAGTCACCCTCACCCGCTGCCTGCTGGA < 41bp 1 0.178619291937204 1 0.0774054527282715 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64032900 chr11:64032910 nonsynonymous SNV 0.787 2 31 hm5C_associated_SNPs_21989 0 0 0 0 1 Ribosome 1 0.500231567833839 1 0.999536864332322 hm5C_site_22957 DeepMRMD:1;iRNA_m5C:0.999536864332322 22958 chr18 12725469 12725469 1 + G C ESCA 12725465 + 12725445 12725485 41 ACCCCACAGTATCTGCCTCACGGTGGAAAATACCAAGTTCT ACCCCACAGTATCTGCCTCACGGTCGAAAATACCAAGTTCT < 41bp 1 0.656699137030937 1 0.370460033416748 experiment 0.686601725938126 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12725465 chr18:12725469 nonsynonymous SNV 0.822 4 25 hm5C_associated_SNPs_21990 0 0 1 0 1 Ribosome 1 0.500231643923984 1 0.999536712152032 hm5C_site_22958 DeepMRMD:1;iRNA_m5C:0.999536712152032 22959 chr19 5691620 5691620 1 + C G ESCA 5691613 + 5691593 5691633 41 ACTGGCCGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGAG ACTGGCCGCCATGAGGAAAGCTGCTGCGAAGAAAGACTGAG < 41bp 1 0.660826074425941 1 0.425768256187439 experiment 0.678347851148118 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691613 chr19:5691620 synonymous SNV . 0 28 hm5C_associated_SNPs_21991 0 0 1 0 1 Ribosome 1 0.500231653732326 1 0.999536692535348 hm5C_site_22959 DeepMRMD:1;iRNA_m5C:0.999536692535348 22960 chr19 5691620 5691620 1 + C G ESCA 5691640 + 5691620 5691660 41 CAAGAAAGACTGAGCCCCTCCCCTGCCCTCTCCCTGAAATA GAAGAAAGACTGAGCCCCTCCCCTGCCCTCTCCCTGAAATA < 41bp 1 0.135497028254983 1 0.0973810255527496 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691640 chr19:5691620 synonymous SNV . 0 1 hm5C_associated_SNPs_21992 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22960 DeepMRMD:1;iRNA_m5C:0.999536712157815 22961 chr3 139062880 139062880 1 + C T ESCA 139062873 + 139062853 139062893 41 GTGGCTTCTGATAATCATGGCGCCCCTCGGAACAACTGTAT GTGGCTTCTGATAATCATGGCGCCCCTTGGAACAACTGTAT < 41bp 1 0.307003742734418 1 0.0518479943275452 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPS22 ENSG00000175110 CDS Human protein_coding chr3:139062873 chr3:139062880 synonymous SNV . 0 28 hm5C_associated_SNPs_21993 0 0 1 0 0 Ribosome 1 0.500280728572382 1 0.999438542855236 hm5C_site_22961 DeepMRMD:1;iRNA_m5C:0.999438542855236 22962 chr11 68705794 68705794 1 + G A ESCA 68705792 + 68705772 68705812 41 TTCTGCCAGCTCTGCAGCCGCCGCTACTGCCTCAGCCACCA TTCTGCCAGCTCTGCAGCCGCCACTACTGCCTCAGCCACCA < 41bp 1 0.135227834021432 1 0.070393294095993 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68705792 chr11:68705794 nonsynonymous SNV 0.926 2 23 hm5C_associated_SNPs_21995 0 0 1 0 1 chromatin 1 0.500231917492319 1 0.999536165015362 hm5C_site_22962 DeepMRMD:1;iRNA_m5C:0.999536165015362 22963 chr21 42629162 42629162 1 + G A ESCA 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCCACAAATGCACTGGTGATCGGTGCCACGGTG < 41bp 1 0.578875983335514 1 0.130164921283722 experiment 0.842248033328972 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629162 synonymous SNV . 0 20 hm5C_associated_SNPs_21996 0 0 1 0 2 Ribosome 1 0.500231643972449 1 0.999536712055102 hm5C_site_22963 DeepMRMD:1;iRNA_m5C:0.999536712055102 22964 chr2 101598834 101598834 1 + G A ESCA 101598827 + 101598807 101598847 41 CAGCTCTGCCTGGTCCAGGACTCCAACGTCCAGGTGATCCC CAGCTCTGCCTGGTCCAGGACTCCAACATCCAGGTGATCCC < 41bp 1 0.672141268807088 1 0.977090954780579 experiment 0.655717462385824 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101598827 chr2:101598834 nonsynonymous SNV 0.875 0 28 hm5C_associated_SNPs_21997 0 0 1 0 1 cytosol 1 0.500231643940743 0.0458180904388421 0.999536712118513 hm5C_site_22964 DeepMRMD:0.0458180904388421;iRNA_m5C:0.999536712118513 22965 chr15 74335396 74335396 1 + C A ESCA 74335388 + 74335368 74335408 41 TGACCTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGG TGACCTCCAGCTGGAAGGCCCCAGCACCATCAGGGTCCTGG < 41bp 1 0.159990368775343 1 0.185105681419373 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74335388 chr15:74335396 nonsynonymous SNV 0.129 2 29 hm5C_associated_SNPs_21998 0 0 0 1 2 Cytosol 1 0.50023164229831 1 0.999536715403381 hm5C_site_22965 DeepMRMD:1;iRNA_m5C:0.999536715403381 22966 chr16 1550422 1550422 1 + C T ESCA 1550440 + 1550420 1550460 41 CACGTCAGCAAGGCTGTCCTCATCTGCCTGGCGCAACTCGG CATGTCAGCAAGGCTGTCCTCATCTGCCTGGCGCAACTCGG < 41bp 1 0.355498623248697 1 0.127169132232666 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550440 chr16:1550422 synonymous SNV . 0 3 hm5C_associated_SNPs_21999 0 0 1 0 2 Cytosol 1 0.500231643921115 1 0.999536712157771 hm5C_site_22966 DeepMRMD:1;iRNA_m5C:0.999536712157771 22967 chr19 47423886 47423886 1 + C T ESCA 47423901 + 47423881 47423921 41 CTTTCCAGACGCCAACATTTCAGCCCCACGGCTGTCTCTGC CTTTCTAGACGCCAACATTTCAGCCCCACGGCTGTCTCTGC < 41bp 1 0.245067250835348 1 0.640811562538147 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47423901 chr19:47423886 stopgain 0.965 1 6 hm5C_associated_SNPs_22000 0 0 1 0 0 Ribosome 1 0.500231606780387 0.718376874923706 0.999536786439225 hm5C_site_22967 DeepMRMD:0.718376874923706;iRNA_m5C:0.999536786439225 22968 chr2 231931656 231931656 1 + A G ESCA 231931662 + 231931642 231931682 41 CAAACAATGTGTGGAAAATGCAGATTTGCCTGAAGGAGAAA CAAACAATGTGTGGGAAATGCAGATTTGCCTGAAGGAGAAA < 41bp 1 0.356877105887351 1 0.439303815364838 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931662 chr2:231931656 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_22003 0 0 1 0 1 Nucleus 1 0.500231636486093 1 0.999536727027813 hm5C_site_22968 DeepMRMD:1;iRNA_m5C:0.999536727027813 22969 chr18 77474867 77474867 1 + C T ESCA 77474860 + 77474840 77474880 41 CAGCAGTGAGTCCGAGGGCACGAAGTCCTCCTCCTCCGCCT CAGCAGTGAGTCCGAGGGCACGAAGTCTTCCTCCTCCGCCT < 41bp 1 0.580243597991803 1 0.171521097421646 experiment 0.839512804016394 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77474860 chr18:77474867 synonymous SNV . 0 28 hm5C_associated_SNPs_22004 0 0 1 0 0 chromatin 1 0.500231643915525 1 0.999536712168951 hm5C_site_22969 DeepMRMD:1;iRNA_m5C:0.999536712168951 22970 chr18 77474867 77474867 1 + C T ESCA 77474881 + 77474861 77474901 41 GAAGTCCTCCTCCTCCGCCTCTGATGGCGAAAGCGAGGGGA GAAGTCTTCCTCCTCCGCCTCTGATGGCGAAAGCGAGGGGA < 41bp 1 0.357995258029099 1 0.289858877658844 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77474881 chr18:77474867 synonymous SNV . 0 7 hm5C_associated_SNPs_22005 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_22970 DeepMRMD:1;iRNA_m5C:0.999536712157814 22971 chr20 23350283 23350283 1 + C T ESCA 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCCTCCAGTGCCACCGCCGCATCCA < 41bp 1 0.559356495560574 1 0.593837082386017 experiment 0.881287008878852 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350283 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_22006 0 0 0 0 2 Cytosol 1 0.500231643921095 0.812325835227966 0.999536712157809 hm5C_site_22971 DeepMRMD:0.812325835227966;iRNA_m5C:0.999536712157809 22972 chr16 727386 727386 1 + C T ESCA 727382 + 727362 727402 41 TGCTCTACCTGGCAGGCGTGCTGGCAGGTGAGGCAGGCGCG TGCTCTACCTGGCAGGCGTGCTGGTAGGTGAGGCAGGCGCG < 41bp 1 0.581797129393673 1 0.421425551176071 experiment 0.836405741212655 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHBDL1 ENSG00000103269 CDS Human protein_coding chr16:727382 chr16:727386 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_22007 0 0 1 0 1 nucleolus 1 0.500231643921094 1 0.999536712157811 hm5C_site_22972 DeepMRMD:1;iRNA_m5C:0.999536712157811 22973 chr9 35733097 35733097 1 + C T ESCA 35733112 + 35733092 35733132 41 CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT CATGATCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT < 41bp 1 0.133004221679311 1 0.0683805346488953 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733112 chr9:35733097 synonymous SNV . 0 6 hm5C_associated_SNPs_22008 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157819 hm5C_site_22973 DeepMRMD:1;iRNA_m5C:0.999536712157819 22974 chr9 35733097 35733097 1 + C T ESCA 35733113 + 35733093 35733133 41 ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG ATGATCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG < 41bp 1 0.145008372190736 1 0.154749184846878 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733113 chr9:35733097 synonymous SNV . 0 5 hm5C_associated_SNPs_22009 0 0 1 0 1 Endoplasmic reticulum 1 0.500228583124213 1 0.999542833751574 hm5C_site_22974 DeepMRMD:1;iRNA_m5C:0.999542833751574 22975 chr11 13399889 13399889 1 + C A ESCA 13399900 + 13399880 13399920 41 GTAGGTGGCCCAAAGAGGACCCACCCCACTGTTCCAGGGAT GTAGGTGGCACAAAGAGGACCCACCCCACTGTTCCAGGGAT < 41bp 1 0.0762565856792682 1 0.139331221580505 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARNTL ENSG00000133794 CDS Human protein_coding chr11:13399900 chr11:13399889 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_22010 0 0 0 0 1 Cytosol 1 0.500231643858686 1 0.999536712282628 hm5C_site_22975 DeepMRMD:1;iRNA_m5C:0.999536712282628 22976 chr13 58206843 58206843 1 + G A ESCA 58206825 + 58206805 58206845 41 CTCGACTGCAGCCTGGGCTTCCGCCTGCAGAGCGCGGCGGC CTCGACTGCAGCCTGGGCTTCCGCCTGCAGAGCGCGGCAGC < 41bp 1 0.365773132956111 1 0.0719987452030182 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58206825 chr13:58206843 nonsynonymous SNV 0.982 0 39 hm5C_associated_SNPs_22011 0 0 0 0 0 exosome 1 0.500231643840548 1 0.999536712318905 hm5C_site_22976 DeepMRMD:1;iRNA_m5C:0.999536712318905 22977 chr8 104343649 104343649 1 + G A ESCA 104343630 + 104343610 104343650 41 AGAGCAACAATTTGCAGGTCCCCAGTTCTTCAGAACCAAGC AGAGCAACAATTTGCAGGTCCCCAGTTCTTCAGAACCAAAC < 41bp 1 0.244817478905627 1 0.0546992421150208 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104343630 chr8:104343649 nonsynonymous SNV 0.972 0 40 hm5C_associated_SNPs_22012 0 0 1 0 1 Ribosome 1 0.500231643723233 1 0.999536712553533 hm5C_site_22977 DeepMRMD:1;iRNA_m5C:0.999536712553533 22978 chr8 104343649 104343649 1 + G A ESCA 104343665 + 104343645 104343685 41 CCAAGCAGCCTCAAAGGTTCCACATCTCTGCTTGTTCACCC CCAAACAGCCTCAAAGGTTCCACATCTCTGCTTGTTCACCC < 41bp 1 0.496916820177834 1 0.0559030175209045 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104343665 chr8:104343649 nonsynonymous SNV 0.972 0 5 hm5C_associated_SNPs_22013 0 0 1 0 1 Ribosome 1 0.500231906870893 1 0.999536186258214 hm5C_site_22978 DeepMRMD:1;iRNA_m5C:0.999536186258214 22979 chr1 26772909 26772909 1 + G A ESCA 26772901 + 26772881 26772921 41 AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC AGCTGATTGCACAAGCTGTACAGGCCACAAAGAACTACAAC < 41bp 1 0.392862091305955 1 0.635603308677673 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772901 chr1:26772909 synonymous SNV . 0 29 hm5C_associated_SNPs_22014 0 0 0 0 1 chromatin 1 0.500230881278118 0.728793382644654 0.999538237443765 hm5C_site_22979 DeepMRMD:0.728793382644654;iRNA_m5C:0.999538237443765 22980 chr1 26772909 26772909 1 + G A ESCA 26772908 + 26772888 26772928 41 TGCACAAGCTGTACAGGCCACGAAGAACTACAACAAGTAAG TGCACAAGCTGTACAGGCCACAAAGAACTACAACAAGTAAG < 41bp 1 0.249951812091052 1 0.444805800914764 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772908 chr1:26772909 synonymous SNV . 0 22 hm5C_associated_SNPs_22015 0 0 0 0 1 chromatin 1 0.500231968947758 1 0.999536062104485 hm5C_site_22980 DeepMRMD:1;iRNA_m5C:0.999536062104485 22981 chr10 112657823 112657823 1 + C T ESCA 112657840 + 112657820 112657860 41 GGTCGTCTTAAACCAGAGAGCTACTGAATATAAGAACTCTT GGTTGTCTTAAACCAGAGAGCTACTGAATATAAGAACTCTT < 41bp 1 0.219552793716729 1 0.150420188903809 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD4 ENSG00000150593 CDS Human protein_coding chr10:112657840 chr10:112657823 nonsynonymous SNV 0.998 2 4 hm5C_associated_SNPs_22016 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_22981 DeepMRMD:1;iRNA_m5C:0.999536712157815 22982 chr3 130672710 130672710 1 + A C ESCA 130672711 + 130672691 130672731 41 CAGCTTGACAGGTGAGACAACGCCTTGTTCTAAGGTGACAG CAGCTTGACAGGTGAGACACCGCCTTGTTCTAAGGTGACAG < 41bp 1 0.653986067054109 1 0.0651845633983612 experiment 0.692027865891781 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130672711 chr3:130672710 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_22017 0 0 1 0 1 Ribosome 1 0.500185333723102 1 0.999629332553797 hm5C_site_22982 DeepMRMD:1;iRNA_m5C:0.999629332553797 22983 chr16 88779139 88779139 1 + T C ESCA 88779122 + 88779102 88779142 41 GCGGCCGTGGACAGCTTCCTCCAGCAGCAGCATGTGCTGGG GCGGCCGTGGACAGCTTCCTCCAGCAGCAGCATGTGCCGGG < 41bp 1 0.537855274474516 1 0.861091375350952 experiment 0.924289451050969 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779122 chr16:88779139 nonsynonymous SNV 0.000 1 38 hm5C_associated_SNPs_22018 0 0 1 0 0 Cytosol 1 0.500231643921116 0.277817249298096 0.999536712157768 hm5C_site_22983 DeepMRMD:0.277817249298096;iRNA_m5C:0.999536712157768 22984 chr12 2783715 2783715 1 + G C ESCA 2783718 + 2783698 2783738 41 GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGCGG GCCCTGCAGGGAACCTACAACAAGCCAATGAGGAGCTGCGG < 41bp 1 0.291436807630924 1 0.776152729988098 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2783718 chr12:2783715 nonsynonymous SNV 0.978 5 18 hm5C_associated_SNPs_22019 0 0 0 0 3 Cytosol 1 0.500231643483944 0.447694540023804 0.999536713032111 hm5C_site_22984 DeepMRMD:0.447694540023804;iRNA_m5C:0.999536713032111 22985 chr20 30358170 30358170 1 + G A ESCA 30358151 + 30358131 30358171 41 ATTTCTCTACCATAGAAGATCTCTTAGGCTTTCTGCTCAGA ATTTCTCTACCATAGAAGATCTCTTAGGCTTTCTGCTCAAA < 41bp 1 0.0800953285753323 1 0.0586842000484467 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30358151 chr20:30358170 synonymous SNV . 0 40 hm5C_associated_SNPs_22020 0 0 1 0 1 Cytosol 1 0.500232522276148 1 0.999534955447705 hm5C_site_22985 DeepMRMD:1;iRNA_m5C:0.999534955447705 22986 chr2 75104436 75104436 1 + C G ESCA 75104440 + 75104420 75104460 41 GAGACCAAAGACATCTCAGACATTGAAGGGTGAGCTTCTGG GAGACCAAAGACATCTGAGACATTGAAGGGTGAGCTTCTGG < 41bp 1 0.0965794535921015 1 0.0792575180530548 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HK2 ENSG00000159399 CDS Human protein_coding chr2:75104440 chr2:75104436 stopgain 0.905 0 17 hm5C_associated_SNPs_22021 0 0 1 0 0 Nucleus 1 0.500231644272264 1 0.999536711455472 hm5C_site_22986 DeepMRMD:1;iRNA_m5C:0.999536711455472 22987 chr17 18137986 18137986 1 + A G ESCA 18138006 + 18137986 18138026 41 AACAAGATTCTGTGGCGGAACTGTGAATCTGGGTAGGTCGA GACAAGATTCTGTGGCGGAACTGTGAATCTGGGTAGGTCGA < 41bp 1 0.269430322510856 1 0.497923403978348 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18138006 chr17:18137986 nonsynonymous SNV 0.998 1 1 hm5C_associated_SNPs_22022 0 0 1 0 2 Cytosol 1 0.500231625605519 1 0.999536748788961 hm5C_site_22987 DeepMRMD:1;iRNA_m5C:0.999536748788961 22988 chr19 11152145 11152145 1 + C T ESCA 11152165 + 11152145 11152185 41 CGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCT TGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCT < 41bp 1 0.374143506947602 1 0.372045189142227 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11152165 chr19:11152145 nonsynonymous SNV 0.996 4 1 hm5C_associated_SNPs_22023 0 0 1 0 1 Nucleus 1 0.500231643764335 1 0.999536712471329 hm5C_site_22988 DeepMRMD:1;iRNA_m5C:0.999536712471329 22989 chr15 75190056 75190056 1 + C T ESCA 75190039 + 75190019 75190059 41 AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCCTGC AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCTTGC < 41bp 1 0.579720931854541 1 0.0881657004356384 experiment 0.840558136290918 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPI ENSG00000178802 CDS Human protein_coding chr15:75190039 chr15:75190056 synonymous SNV . 0 38 hm5C_associated_SNPs_22024 0 0 1 3 0 Ribosome 1 0.500231644869766 1 0.999536710260468 hm5C_site_22989 DeepMRMD:1;iRNA_m5C:0.999536710260468 22990 chr3 48508870 48508870 1 + T C ESCA 48508871 + 48508851 48508891 41 AGAGCAGGGGTACCAAGGATCTTCCTCCAGTGAAGGACCCT AGAGCAGGGGTACCAAGGACCTTCCTCCAGTGAAGGACCCT < 41bp 1 0.127797609251264 1 0.11008408665657 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TREX1 ENSG00000213689 CDS Human protein_coding chr3:48508871 chr3:48508870 synonymous SNV . 0 20 hm5C_associated_SNPs_22025 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_22990 DeepMRMD:1;iRNA_m5C:0.999536712157815 22991 chr11 65270548 65270548 1 + G C ESCA 65270555 + 65270535 65270575 41 GATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTT GATCAAGTGGATTCAGGAGGCTGTGCTGTGTGCCAATGTTT < 41bp 1 0.461019318533416 1 0.173072129487991 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270555 chr11:65270548 . . 0 14 hm5C_associated_SNPs_22026 0 0 1 1 0 unknown 1 0.500231643939432 1 0.999536712121136 hm5C_site_22991 DeepMRMD:1;iRNA_m5C:0.999536712121136 22992 chr11 65270548 65270548 1 + G C ESCA 65270560 + 65270540 65270580 41 AGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTT AGTGGATTCAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTT < 41bp 1 0.508786892720546 1 0.246183156967163 experiment 0.982426214558908 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270560 chr11:65270548 . . 0 9 hm5C_associated_SNPs_22027 0 0 1 1 0 unknown 1 0.500231642497961 1 0.999536715004077 hm5C_site_22992 DeepMRMD:1;iRNA_m5C:0.999536715004077 22993 chr11 65270548 65270548 1 + G C ESCA 65270567 + 65270547 65270587 41 TGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAG TCAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAG < 41bp 1 0.309094900115389 1 0.140723586082458 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270567 chr11:65270548 . . 0 2 hm5C_associated_SNPs_22028 0 0 1 1 0 unknown 1 0.50022571045142 1 0.99954857909716 hm5C_site_22993 DeepMRMD:1;iRNA_m5C:0.99954857909716 22994 chr22 24204366 24204366 1 + T C ESCA 24204381 + 24204361 24204401 41 ACCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTC ACCTCCCTATCATCAATGCCCCGACCTTGGTATGTATCCTC < 41bp 1 0.0750087493235044 1 0.0487202107906342 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24204381 chr22:24204366 nonsynonymous SNV 0.995 3 6 hm5C_associated_SNPs_22029 0 0 1 0 2 nucleoplasm 1 0.500231801520977 1 0.999536396958047 hm5C_site_22994 DeepMRMD:1;iRNA_m5C:0.999536396958047 22995 chr22 24204366 24204366 1 + T C ESCA 24204382 + 24204362 24204402 41 CCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTCT CCTCCCTATCATCAATGCCCCGACCTTGGTATGTATCCTCT < 41bp 1 0.147442771794508 1 0.168306708335876 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24204382 chr22:24204366 nonsynonymous SNV 0.995 3 5 hm5C_associated_SNPs_22030 0 0 1 0 2 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_22995 DeepMRMD:1;iRNA_m5C:0.999536712157815 22996 chr22 24204366 24204366 1 + T C ESCA 24204386 + 24204366 24204406 41 TCTATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG CCTATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG < 41bp 1 0.501192800959586 1 0.0429338812828064 experiment 0.997614398080827 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24204386 chr22:24204366 nonsynonymous SNV 0.995 3 1 hm5C_associated_SNPs_22031 0 0 1 0 2 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_22996 DeepMRMD:1;iRNA_m5C:0.999536712157815 22997 chr19 52195906 52195906 1 + A G ESCA 52195886 + 52195866 52195906 41 GCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCA GCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCG < 41bp 1 0.101028865568806 1 0.0165837109088898 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195886 chr19:52195906 . . 0 41 hm5C_associated_SNPs_22032 0 0 1 0 0 unknown 1 0.50023164050032 1 0.999536718999361 hm5C_site_22997 DeepMRMD:1;iRNA_m5C:0.999536718999361 22998 chr19 52195906 52195906 1 + A G ESCA 52195887 + 52195867 52195907 41 CACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCAC CACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCGC < 41bp 1 0.375969869677345 1 0.157450526952744 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195887 chr19:52195906 . . 0 40 hm5C_associated_SNPs_22033 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_22998 DeepMRMD:1;iRNA_m5C:0.999536712157814 22999 chr15 76630258 76630258 1 + C T ESCA 76630260 + 76630240 76630280 41 GTACCTGGACGAGACGTGCACGTGCTTCGTGAGAGACGGGA GTACCTGGACGAGACGTGTACGTGCTTCGTGAGAGACGGGA < 41bp 1 0.308327253449199 1 0.206024438142776 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630260 chr15:76630258 synonymous SNV . 0 19 hm5C_associated_SNPs_22034 0 0 1 0 1 Cytosol 1 0.500231643921139 1 0.999536712157721 hm5C_site_22999 DeepMRMD:1;iRNA_m5C:0.999536712157721 23000 chr7 99780445 99780445 1 + G A ESCA 99780447 + 99780427 99780467 41 TTCAATGCTGTGAAAGCCGCCAAAAGTGACATGCAGGTAAA TTCAATGCTGTGAAAGCCACCAAAAGTGACATGCAGGTAAA < 41bp 1 0.549162178696132 1 0.516759157180786 experiment 0.901675642607736 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG3 ENSG00000066923 CDS Human protein_coding chr7:99780447 chr7:99780445 nonsynonymous SNV 0.993 3 19 hm5C_associated_SNPs_22035 0 0 0 0 2 exosome 1 0.5002316273139 0.966481685638428 0.9995367453722 hm5C_site_23000 DeepMRMD:0.966481685638428;iRNA_m5C:0.9995367453722 23001 chr7 30661051 30661051 1 + G T ESCA 30661058 + 30661038 30661078 41 TCGTTCCTGTTATGACCTCTCCTGTCATGCACGAGCCACCA TCGTTCCTGTTATTACCTCTCCTGTCATGCACGAGCCACCA < 41bp 1 0.20005685909605 1 0.200929254293442 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GARS ENSG00000106105 CDS Human protein_coding chr7:30661058 chr7:30661051 nonsynonymous SNV 0.996 5 14 hm5C_associated_SNPs_22036 0 0 1 0 0 Cytosol 1 0.50023166603636 1 0.999536667927279 hm5C_site_23001 DeepMRMD:1;iRNA_m5C:0.999536667927279 23002 chr12 8196342 8196342 1 + A G ESCA 8196351 + 8196331 8196371 41 TTTCCCGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT TTTCCCGAAAGGGAAGACACCCTCCAGATGATGATGTAAGT < 41bp 1 0.0249142685225737 1 0.0906901359558105 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196351 chr12:8196342 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_22037 0 0 1 0 1 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_23002 DeepMRMD:1;iRNA_m5C:0.999536712157815 23003 chr12 104492126 104492126 1 + G T ESCA 104492140 + 104492120 104492160 41 GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG GAAAGATACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG < 41bp 1 0.458264270621265 1 0.463323950767517 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104492140 chr12:104492126 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_22038 0 0 1 0 1 Cytosol 1 0.500231643914495 1 0.99953671217101 hm5C_site_23003 DeepMRMD:1;iRNA_m5C:0.99953671217101 23004 chr9 80858446 80858446 1 + C T ESCA 80858436 + 80858416 80858456 41 GAGTCTTCGCTATAGGAGACCTGATCTTGACTGTATGGCTG GAGTCTTCGCTATAGGAGACCTGATCTTGATTGTATGGCTG < 41bp 1 0.309104129251962 1 0.0736338496208191 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP78 ENSG00000148019 CDS Human protein_coding chr9:80858436 chr9:80858446 synonymous SNV . 0 31 hm5C_associated_SNPs_22039 0 0 1 0 1 Nucleus 1 0.500231583508577 1 0.999536832982846 hm5C_site_23004 DeepMRMD:1;iRNA_m5C:0.999536832982846 23005 chr19 19656499 19656499 1 + C T ESCA 19656481 + 19656461 19656501 41 CACCGGTGCCCGCGGAGGACCCAGCTGCCTTCTCCATGCTG CACCGGTGCCCGCGGAGGACCCAGCTGCCTTCTCCATGTTG < 41bp 1 0.149750367710786 1 0.254585713148117 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19656481 chr19:19656499 synonymous SNV . 0 39 hm5C_associated_SNPs_22040 0 0 0 0 0 exosome 1 0.500231643886042 1 0.999536712227917 hm5C_site_23005 DeepMRMD:1;iRNA_m5C:0.999536712227917 23006 chr19 18053577 18053577 1 + C T ESCA 18053574 + 18053554 18053594 41 CGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC CGGCAAGGCGCCGCGGGTGGCCATGTCCAGCAAGGTCACCC < 41bp 1 0.211061045402692 1 0.0779160559177399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053574 chr19:18053577 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_22041 0 0 1 0 1 Ribosome 1 0.500231643928923 1 0.999536712142154 hm5C_site_23006 DeepMRMD:1;iRNA_m5C:0.999536712142154 23007 chr19 18053577 18053577 1 + C T ESCA 18053575 + 18053555 18053595 41 GGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCCG GGCAAGGCGCCGCGGGTGGCCATGTCCAGCAAGGTCACCCG < 41bp 1 0.497464363322472 1 0.442425042390823 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053575 chr19:18053577 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_22042 0 0 1 0 1 Ribosome 1 0.500231643713765 1 0.999536712572471 hm5C_site_23007 DeepMRMD:1;iRNA_m5C:0.999536712572471 23008 chr1 109773544 109773544 1 + C T ESCA 109773540 + 109773520 109773560 41 GAGGATTTGGGGTGATTGTACAGTCAGGAAGAAGTACTCTC GAGGATTTGGGGTGATTGTACAGTTAGGAAGAAGTACTCTC < 41bp 1 0.379372145448737 1 0.158663004636765 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SARS ENSG00000031698 CDS Human protein_coding chr1:109773540 chr1:109773544 synonymous SNV . 0 25 hm5C_associated_SNPs_22043 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23008 DeepMRMD:1;iRNA_m5C:0.999536712157815 23009 chr16 14972668 14972668 1 + G A ESCA 14972674 + 14972654 14972694 41 TGACCCAGGACAACGGCATTCTGACATTCTCAAACCTGGTA TGACCCAGGACAACAGCATTCTGACATTCTCAAACCTGGTA < 41bp 1 0.288262107170391 1 0.0720533728599548 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972674 chr16:14972668 nonsynonymous SNV 0.988 4 15 hm5C_associated_SNPs_22044 0 0 0 0 2 Nucleus 1 0.500231555231931 1 0.999536889536138 hm5C_site_23009 DeepMRMD:1;iRNA_m5C:0.999536889536138 23010 chr16 14972668 14972668 1 + G A ESCA 14972678 + 14972658 14972698 41 CCAGGACAACGGCATTCTGACATTCTCAAACCTGGTAACGT CCAGGACAACAGCATTCTGACATTCTCAAACCTGGTAACGT < 41bp 1 0.0456569979177707 1 0.0114022195339203 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972678 chr16:14972668 nonsynonymous SNV 0.988 4 11 hm5C_associated_SNPs_22045 0 0 0 0 2 Nucleus 1 0.500231622185493 1 0.999536755629015 hm5C_site_23010 DeepMRMD:1;iRNA_m5C:0.999536755629015 23011 chr16 14972668 14972668 1 + G A ESCA 14972682 + 14972662 14972702 41 GACAACGGCATTCTGACATTCTCAAACCTGGTAACGTGTTC GACAACAGCATTCTGACATTCTCAAACCTGGTAACGTGTTC < 41bp 1 0.593835270233515 1 0.881101250648499 experiment 0.812329459532971 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972682 chr16:14972668 nonsynonymous SNV 0.988 4 7 hm5C_associated_SNPs_22046 0 0 0 0 2 Nucleus 1 0.500231642182678 0.237797498703002 0.999536715634644 hm5C_site_23011 DeepMRMD:0.237797498703002;iRNA_m5C:0.999536715634644 23012 chr19 10823277 10823277 1 + C T ESCA 10823292 + 10823272 10823312 41 ATGTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT ATGTTTGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT < 41bp 1 0.263341622121219 1 0.0679230988025665 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823292 chr19:10823277 synonymous SNV . 0 6 hm5C_associated_SNPs_22047 0 0 1 0 2 Ribosome 1 0.500206063299557 1 0.999587873400885 hm5C_site_23012 DeepMRMD:1;iRNA_m5C:0.999587873400885 23013 chr15 91456129 91456129 1 + C T ESCA 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCTCGTGCTGCG < 41bp 1 0.682958074577971 1 0.852319836616516 experiment 0.634083850844058 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456129 nonsynonymous SNV 0.833 4 32 hm5C_associated_SNPs_22048 0 0 1 1 2 Endoplasmic reticulum 1 0.500231643922569 0.295360326766968 0.999536712154861 hm5C_site_23013 DeepMRMD:0.295360326766968;iRNA_m5C:0.999536712154861 23014 chr17 48148781 48148781 1 + G A ESCA 48148790 + 48148770 48148810 41 TTGCTGAGCCAGGAGGCAGGCGGAGACCTGCGGAGGAGGCA TTGCTGAGCCAAGAGGCAGGCGGAGACCTGCGGAGGAGGCA < 41bp 1 0.449999181941226 1 0.86384642124176 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48148790 chr17:48148781 synonymous SNV . 0 12 hm5C_associated_SNPs_22049 0 0 0 0 0 Cytosol 1 0.500231643921092 0.27230715751648 0.999536712157815 hm5C_site_23014 DeepMRMD:0.27230715751648;iRNA_m5C:0.999536712157815 23015 chr8 145692681 145692681 1 + G T ESCA 145692679 + 145692659 145692699 41 GGGGGAGGCAGGCCCTGCTCCAGGGGACTCAGCCAGCCCCT GGGGGAGGCAGGCCCTGCTCCATGGGACTCAGCCAGCCCCT < 41bp 1 0.680392004305086 1 0.735656261444092 experiment 0.639215991389828 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145692679 chr8:145692681 nonsynonymous SNV 0.987 3 23 hm5C_associated_SNPs_22050 0 0 0 0 2 nucleolus 1 0.500231474910122 0.528687477111816 0.999537050179756 hm5C_site_23015 DeepMRMD:0.528687477111816;iRNA_m5C:0.999537050179756 23016 chr12 6644003 6644003 1 + G T ESCA 6643991 + 6643971 6644011 41 CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGA CGCAGCCGAGCCACATCGCTCAGACACCATGGTGAAGGTGA < 41bp 1 0.251049370106281 1 0.201416909694672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6643991 chr12:6644003 nonsynonymous SNV 0.615 0 33 hm5C_associated_SNPs_22051 0 0 1 0 2 Ribosome 1 0.500232910579758 1 0.999534178840483 hm5C_site_23016 DeepMRMD:1;iRNA_m5C:0.999534178840483 23017 chr19 806462 806462 1 + C T ESCA 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGT < 41bp 1 0.301194210777348 1 0.0571145117282867 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806462 nonsynonymous SNV 0.010 0 41 hm5C_associated_SNPs_22052 0 0 1 0 2 Cytosol 1 0.500231518616154 1 0.999536962767691 hm5C_site_23017 DeepMRMD:1;iRNA_m5C:0.999536962767691 23018 chr19 806462 806462 1 + C T ESCA 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTG < 41bp 1 0.442108363705898 1 0.0215251743793488 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806462 nonsynonymous SNV 0.010 0 40 hm5C_associated_SNPs_22053 0 0 1 0 2 Cytosol 1 0.500232267034935 1 0.999535465930131 hm5C_site_23018 DeepMRMD:1;iRNA_m5C:0.999535465930131 23019 chr19 806462 806462 1 + C T ESCA 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGG < 41bp 1 0.475919000492258 1 0.167927891016006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806462 nonsynonymous SNV 0.010 0 39 hm5C_associated_SNPs_22054 0 0 1 0 2 Cytosol 1 0.500231644168056 1 0.999536711663889 hm5C_site_23019 DeepMRMD:1;iRNA_m5C:0.999536711663889 23020 chr19 806462 806462 1 + C T ESCA 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGGC < 41bp 1 0.470400493520915 1 0.433876693248749 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806462 nonsynonymous SNV 0.010 0 38 hm5C_associated_SNPs_22055 0 0 1 0 2 Cytosol 1 0.500231670941538 1 0.999536658116923 hm5C_site_23020 DeepMRMD:1;iRNA_m5C:0.999536658116923 23021 chr19 806462 806462 1 + C T ESCA 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGGCGGCGG < 41bp 1 0.0668725721874232 1 0.178160905838013 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806462 nonsynonymous SNV 0.010 0 33 hm5C_associated_SNPs_22057 0 0 1 0 2 Cytosol 1 0.500231646430215 1 0.999536707139569 hm5C_site_23021 DeepMRMD:1;iRNA_m5C:0.999536707139569 23022 chr19 806462 806462 1 + C T ESCA 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGTGGCGGCGGC < 41bp 1 0.212714379780819 1 0.183665215969086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806462 nonsynonymous SNV 0.010 0 32 hm5C_associated_SNPs_22058 0 0 1 0 2 Cytosol 1 0.500231643921211 1 0.999536712157578 hm5C_site_23022 DeepMRMD:1;iRNA_m5C:0.999536712157578 23023 chr3 16312569 16312569 1 + C T ESCA 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTCAGCACTTTGCGCCACCTTATTCTAACCAGGTGA < 41bp 1 0.227309827298311 1 0.0677489638328552 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312569 nonsynonymous SNV 0.026 1 28 hm5C_associated_SNPs_22059 0 0 1 0 1 Ribosome 1 0.500230806704859 1 0.999538386590282 hm5C_site_23023 DeepMRMD:1;iRNA_m5C:0.999538386590282 23024 chr1 23236980 23236980 1 + C T ESCA 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACCGCAACCACTGGCCCAAGTTC < 41bp 1 0.450900276474889 1 0.381707668304443 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236980 nonsynonymous SNV 0.998 5 30 hm5C_associated_SNPs_22060 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642325752 1 0.999536715348497 hm5C_site_23024 DeepMRMD:1;iRNA_m5C:0.999536715348497 23025 chr17 4701691 4701691 1 + G T ESCA 4701676 + 4701656 4701696 41 GGCAAGTACTTTTGGGAGACCAGATACCCAAATTCGCCGTT GGCAAGTACTTTTGGGAGACCAGATACCCAAATTCTCCGTT < 41bp 1 0.698706071520437 1 0.641962051391602 experiment 0.602587856959127 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701676 chr17:4701691 nonsynonymous SNV 0.996 0 36 hm5C_associated_SNPs_22061 0 0 1 0 0 Ribosome 1 0.500231643920649 0.716075897216796 0.999536712158703 hm5C_site_23025 DeepMRMD:0.716075897216796;iRNA_m5C:0.999536712158703 23026 chr1 163042230 163042230 1 + T A ESCA 163042250 + 163042230 163042270 41 TGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA AGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA < 41bp 1 0.120929028716206 1 0.0626991093158722 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RGS4 ENSG00000117152 CDS Human protein_coding chr1:163042250 chr1:163042230 synonymous SNV . 0 1 hm5C_associated_SNPs_22062 0 0 0 0 2 exosome 1 0.500231527684728 1 0.999536944630543 hm5C_site_23026 DeepMRMD:1;iRNA_m5C:0.999536944630543 23027 chr19 10789847 10789847 1 + C T ESCA 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCGCGTGCCCACTTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0832642834037425 1 0.0820710062980652 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789847 synonymous SNV . 0 14 hm5C_associated_SNPs_22063 0 0 1 0 2 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_23027 DeepMRMD:1;iRNA_m5C:0.999536712157818 23028 chr19 10789847 10789847 1 + C T ESCA 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCGCGTGCCCACTTGGGGTCCCCTCCGAGGCTGGGTAAGGC < 41bp 1 0.0360555522503535 1 0.0905439555644989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789847 synonymous SNV . 0 13 hm5C_associated_SNPs_22064 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23028 DeepMRMD:1;iRNA_m5C:0.999536712157815 23029 chr17 62525459 62525459 1 + C G ESCA 62525477 + 62525457 62525497 41 CTCCAGTTAACAAACACAAACAGTTCCACTTGGAGAGAAAA CTGCAGTTAACAAACACAAACAGTTCCACTTGGAGAGAAAA < 41bp 1 0.155996189585507 1 0.195197641849518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP95 ENSG00000258890 CDS Human protein_coding chr17:62525477 chr17:62525459 nonsynonymous SNV 0.481 1 3 hm5C_associated_SNPs_22065 0 0 1 0 2 Nucleus 1 0.500231647532838 1 0.999536704934324 hm5C_site_23029 DeepMRMD:1;iRNA_m5C:0.999536704934324 23030 chr1 164789343 164789343 1 + A T ESCA 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGTGATTTGTTCATGAGCGTGCAGTCACTCAA < 41bp 1 0.586069049769059 1 0.191355288028717 experiment 0.827861900461881 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789343 synonymous SNV . 0 12 hm5C_associated_SNPs_22066 0 0 0 0 2 Ribosome 1 0.500231693513473 1 0.999536612973053 hm5C_site_23030 DeepMRMD:1;iRNA_m5C:0.999536612973053 23031 chr15 69003150 69003150 1 + G A ESCA 69003148 + 69003128 69003168 41 CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTCGA CTGGAGCTGCACGGGCACAGCCAGCGTGTGGGGCTGGTCGA < 41bp 1 0.448426009628495 1 0.42527836561203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69003148 chr15:69003150 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_22067 0 0 0 0 2 exosome 1 0.500231643624868 1 0.999536712750265 hm5C_site_23031 DeepMRMD:1;iRNA_m5C:0.999536712750265 23032 chr6 26204991 26204991 1 + G C ESCA 26204977 + 26204957 26204997 41 GGCATTACCAAGCCTGCCATCCGGCGCCTTGCTCGTCGCGG GGCATTACCAAGCCTGCCATCCGGCGCCTTGCTCCTCGCGG < 41bp 1 0.625975394254436 1 0.921503782272339 experiment 0.748049211491129 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIST1H4E ENSG00000198518 CDS Human other chr6:26204977 chr6:26204991 nonsynonymous SNV 0.025 0 35 hm5C_associated_SNPs_22068 0 0 1 0 0 Nucleus 1 0.500231643921092 0.156992435455322 0.999536712157815 hm5C_site_23032 DeepMRMD:0.156992435455322;iRNA_m5C:0.999536712157815 23033 chr6 31638955 31638955 1 + G A ESCA 31638959 + 31638939 31638979 41 TTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGAC TTCCCGACATCCGGACATGCCACTTCTGCCTCGTAGAAGAC < 41bp 1 0.363361030465076 1 0.046382874250412 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638959 chr6:31638955 nonsynonymous SNV 0.196 0 17 hm5C_associated_SNPs_22069 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_23033 DeepMRMD:1;iRNA_m5C:0.999536712157815 23034 chr6 31638955 31638955 1 + G A ESCA 31638961 + 31638941 31638981 41 CCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGACCC CCCGACATCCGGACATGCCACTTCTGCCTCGTAGAAGACCC < 41bp 1 0.332648894374739 1 0.0381271541118622 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638961 chr6:31638955 nonsynonymous SNV 0.196 0 15 hm5C_associated_SNPs_22070 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_23034 DeepMRMD:1;iRNA_m5C:0.999536712157815 23035 chr12 53663130 53663130 1 + C A ESCA 53663114 + 53663094 53663134 41 CCCTCCATGCCTGCTTGGTGCAGTGCTCTCGCGAGGCTGCT CCCTCCATGCCTGCTTGGTGCAGTGCTCTCGCGAGGATGCT < 41bp 1 0.337971043127148 1 0.109898269176483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663114 chr12:53663130 nonsynonymous SNV 0.984 1 37 hm5C_associated_SNPs_22071 0 0 1 0 0 Nucleus 1 0.50023164392109 1 0.999536712157821 hm5C_site_23035 DeepMRMD:1;iRNA_m5C:0.999536712157821 23036 chr19 45260408 45260408 1 + G C ESCA 45260397 + 45260377 45260417 41 CCGCTCACCTGGCGTGCGAGCACCGCAGCCCGACCTGCCTG CCGCTCACCTGGCGTGCGAGCACCGCAGCCCCACCTGCCTG < 41bp 1 0.670911264110946 1 0.278014838695526 experiment 0.658177471778107 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45260397 chr19:45260408 synonymous SNV . 0 32 hm5C_associated_SNPs_22072 0 0 0 0 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_23036 DeepMRMD:1;iRNA_m5C:0.999536712157818 23037 chr14 21462709 21462709 1 + A T ESCA 21462722 + 21462702 21462742 41 GTGGTTCAGAATCTGGGGAGCCTTATATTCCAGGTGTCTTT GTGGTTCTGAATCTGGGGAGCCTTATATTCCAGGTGTCTTT < 41bp 1 0.0793411261396483 1 0.015850841999054 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21462722 chr14:21462709 synonymous SNV . 0 8 hm5C_associated_SNPs_22074 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23037 DeepMRMD:1;iRNA_m5C:0.999536712157815 23038 chr1 36028834 36028834 1 + G A ESCA 36028846 + 36028826 36028866 41 ACCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAG ACCTGACCATTGAAGATGGGCCCCGGGAGATCCTGATCAAG < 41bp 1 0.216109549012321 1 0.096791684627533 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028846 chr1:36028834 nonsynonymous SNV 0.107 1 9 hm5C_associated_SNPs_22075 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157811 hm5C_site_23038 DeepMRMD:1;iRNA_m5C:0.999536712157811 23039 chr1 36028834 36028834 1 + G A ESCA 36028847 + 36028827 36028867 41 CCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGG CCTGACCATTGAAGATGGGCCCCGGGAGATCCTGATCAAGG < 41bp 1 0.308574508597665 1 0.183249324560165 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028847 chr1:36028834 nonsynonymous SNV 0.107 1 8 hm5C_associated_SNPs_22076 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_23039 DeepMRMD:1;iRNA_m5C:0.999536712157814 23040 chr1 36028834 36028834 1 + G A ESCA 36028848 + 36028828 36028868 41 CTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGGA CTGACCATTGAAGATGGGCCCCGGGAGATCCTGATCAAGGA < 41bp 1 0.464777922391329 1 0.464704573154449 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028848 chr1:36028834 nonsynonymous SNV 0.107 1 7 hm5C_associated_SNPs_22077 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921149 1 0.999536712157701 hm5C_site_23040 DeepMRMD:1;iRNA_m5C:0.999536712157701 23041 chr19 52714685 52714685 1 + G A ESCA 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG CGCACCTCGGCCTACGGCCTCTTCTCCGTCTGCTACCCCCG < 41bp 1 0.390377984968584 1 0.0599322617053986 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714685 nonsynonymous SNV 0.993 4 14 hm5C_associated_SNPs_22078 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23041 DeepMRMD:1;iRNA_m5C:0.999536712157815 23042 chr7 100867224 100867224 1 + G A ESCA 100867232 + 100867212 100867252 41 CTGCAGGTGTCTGAAGTGGACTGTGTGAGCCTGGGCATTCC CTGCAGGTGTCTAAAGTGGACTGTGTGAGCCTGGGCATTCC < 41bp 1 0.606549247047665 1 0.0596912205219269 experiment 0.78690150590467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867232 chr7:100867224 synonymous SNV . 0 13 hm5C_associated_SNPs_22080 0 0 1 0 1 Cytosol 1 0.500231643921116 1 0.999536712157769 hm5C_site_23042 DeepMRMD:1;iRNA_m5C:0.999536712157769 23043 chr3 170110118 170110118 1 + G T ESCA 170110100 + 170110080 170110120 41 GAGGCCGATAGGCAAGAACTCCAAGATGAACTCAGACAGGA GAGGCCGATAGGCAAGAACTCCAAGATGAACTCAGACATGA < 41bp 1 0.492021411889352 1 0.322549015283585 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110100 chr3:170110118 nonsynonymous SNV 0.993 2 39 hm5C_associated_SNPs_22082 0 0 1 0 1 Nucleus 1 0.500231642975869 1 0.999536714048262 hm5C_site_23043 DeepMRMD:1;iRNA_m5C:0.999536714048262 23044 chr3 170110118 170110118 1 + G T ESCA 170110110 + 170110090 170110130 41 GGCAAGAACTCCAAGATGAACTCAGACAGGAACGGGAAGCA GGCAAGAACTCCAAGATGAACTCAGACATGAACGGGAAGCA < 41bp 1 0.598554371637362 1 0.180947780609131 experiment 0.802891256725276 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110110 chr3:170110118 nonsynonymous SNV 0.993 2 29 hm5C_associated_SNPs_22083 0 0 1 0 1 Nucleus 1 0.500231645280025 1 0.999536709439949 hm5C_site_23044 DeepMRMD:1;iRNA_m5C:0.999536709439949 23045 chr5 145641103 145641103 1 + C A ESCA 145641091 + 145641071 145641111 41 AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAA AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCATAATCCAA < 41bp 1 0.379630556143979 1 0.241732627153397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641091 chr5:145641103 nonsynonymous SNV 0.956 3 33 hm5C_associated_SNPs_22084 0 0 1 0 1 Nucleus 1 0.500231643998231 1 0.999536712003538 hm5C_site_23045 DeepMRMD:1;iRNA_m5C:0.999536712003538 23046 chr6 43168191 43168191 1 + C T ESCA 43168200 + 43168180 43168220 41 CTGGGCCAGATCGAAGACCACAGACGAACCCACCAACCCAT CTGGGCCAGATTGAAGACCACAGACGAACCCACCAACCCAT < 41bp 1 0.224488278324292 1 0.302490472793579 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CUL9 ENSG00000112659 CDS Human protein_coding chr6:43168200 chr6:43168191 synonymous SNV . 0 12 hm5C_associated_SNPs_22085 0 0 0 0 1 chromatin 1 0.500231666569239 1 0.999536666861521 hm5C_site_23046 DeepMRMD:1;iRNA_m5C:0.999536666861521 23047 chr3 20019889 20019889 1 + G A ESCA 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATGACAATAGGTAAGATTAATATCT < 41bp 1 0.236159101610772 1 0.161831438541412 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019889 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_22086 0 0 0 3 2 Ribosome 1 0.500231643919939 1 0.999536712160122 hm5C_site_23047 DeepMRMD:1;iRNA_m5C:0.999536712160122 23048 chr8 121301870 121301870 1 + T G ESCA 121301861 + 121301841 121301881 41 ACCTAGCTACACATTGTTGTCAGTGAGACTTTGGTCAAAGT ACCTAGCTACACATTGTTGTCAGTGAGACGTTGGTCAAAGT < 41bp 1 0.202305040339604 1 0.193993300199509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121301861 chr8:121301870 synonymous SNV . 0 30 hm5C_associated_SNPs_22087 0 0 0 0 1 Ribosome 1 0.50024374466794 1 0.99951251066412 hm5C_site_23048 DeepMRMD:1;iRNA_m5C:0.99951251066412 23049 chr1 180059910 180059910 1 + G C ESCA 180059896 + 180059876 180059916 41 ACTAACAGAGTCAGAACGTTCCAGAGGATCCCTGGAGTCTA ACTAACAGAGTCAGAACGTTCCAGAGGATCCCTGCAGTCTA < 41bp 1 0.511722223486102 1 0.480455905199051 experiment 0.976555553027796 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180059896 chr1:180059910 nonsynonymous SNV 0.899 2 35 hm5C_associated_SNPs_22088 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23049 DeepMRMD:1;iRNA_m5C:0.999536712157815 23050 chr15 22945048 22945048 1 + G T ESCA 22945057 + 22945037 22945077 41 CAGGTGGTCACGGGCTCGGGCCGCCAGGAGGCCCAGAAGAC CAGGTGGTCACTGGCTCGGGCCGCCAGGAGGCCCAGAAGAC < 41bp 1 0.125491289065672 1 0.127256989479065 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22945057 chr15:22945048 synonymous SNV . 0 12 hm5C_associated_SNPs_22089 0 0 1 0 1 Cytosol 1 0.500231644072614 1 0.999536711854772 hm5C_site_23050 DeepMRMD:1;iRNA_m5C:0.999536711854772 23051 chr16 5121961 5121961 1 + G A ESCA 5121942 + 5121922 5121962 41 GCGCTGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTAGCGG GCGCTGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTAGCAG < 41bp 1 0.439823182806747 1 0.435712486505508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5121942 chr16:5121961 synonymous SNV . 0 40 hm5C_associated_SNPs_22090 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23051 DeepMRMD:1;iRNA_m5C:0.999536712157815 23052 chr16 5121961 5121961 1 + G A ESCA 5121945 + 5121925 5121965 41 CTGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTAGCGGTGG CTGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTAGCAGTGG < 41bp 1 0.505130573023096 1 0.363696098327637 experiment 0.989738853953808 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5121945 chr16:5121961 synonymous SNV . 0 37 hm5C_associated_SNPs_22091 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23052 DeepMRMD:1;iRNA_m5C:0.999536712157815 23053 chr16 5121961 5121961 1 + G A ESCA 5121946 + 5121926 5121966 41 TGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTAGCGGTGGT TGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTAGCAGTGGT < 41bp 1 0.380840178110472 1 0.693167209625244 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5121946 chr16:5121961 synonymous SNV . 0 36 hm5C_associated_SNPs_22092 0 0 1 0 1 Ribosome 1 0.500231644162974 0.613665580749512 0.999536711674052 hm5C_site_23053 DeepMRMD:0.613665580749512;iRNA_m5C:0.999536711674052 23054 chr8 92090640 92090640 1 + T C ESCA 92090658 + 92090638 92090678 41 ATTGAAAACTTAACAGGAGCCAGACATATGGAAAGTGAGAA ATCGAAAACTTAACAGGAGCCAGACATATGGAAAGTGAGAA < 41bp 1 0.44332554354136 1 0.391882419586182 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92090658 chr8:92090640 synonymous SNV . 0 3 hm5C_associated_SNPs_22093 0 0 1 0 1 Ribosome 1 0.500231643920594 1 0.999536712158811 hm5C_site_23054 DeepMRMD:1;iRNA_m5C:0.999536712158811 23055 chr19 13054423 13054423 1 + G A ESCA 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACAA < 41bp 1 0.634784764364257 1 0.183927237987518 experiment 0.730430471271487 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054423 nonsynonymous SNV 0.973 1 40 hm5C_associated_SNPs_22094 0 0 1 0 2 Ribosome 1 0.500228623997848 1 0.999542752004305 hm5C_site_23055 DeepMRMD:1;iRNA_m5C:0.999542752004305 23056 chr18 74625774 74625774 1 + A G ESCA 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGCGGTCGCACACCGGGGGAAAGCCCTAC < 41bp 1 0.306200238978473 1 0.0665511190891266 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625774 nonsynonymous SNV 0.980 4 31 hm5C_associated_SNPs_22098 0 0 0 0 2 Cytosol 1 0.500231643878212 1 0.999536712243576 hm5C_site_23056 DeepMRMD:1;iRNA_m5C:0.999536712243576 23057 chr16 12662432 12662432 1 + C T ESCA 12662431 + 12662411 12662451 41 TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA TTCCCGCTTCCCCAAACTGTCTCGGGGTCAGCCCCGGGAGA < 41bp 1 0.557527142397002 1 0.653680503368378 experiment 0.884945715205996 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662431 chr16:12662432 synonymous SNV . 0 22 hm5C_associated_SNPs_22100 0 0 0 0 1 Nucleus 1 0.500231643921092 0.692638993263244 0.999536712157815 hm5C_site_23057 DeepMRMD:0.692638993263244;iRNA_m5C:0.999536712157815 23058 chr16 12662432 12662432 1 + C T ESCA 12662433 + 12662413 12662453 41 CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC CCCGCTTCCCCAAACTGTCTCGGGGTCAGCCCCGGGAGACC < 41bp 1 0.522952083313185 1 0.95572429895401 experiment 0.95409583337363 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662433 chr16:12662432 synonymous SNV . 0 20 hm5C_associated_SNPs_22101 0 0 0 0 1 Nucleus 1 0.500231643921092 0.08855140209198 0.999536712157815 hm5C_site_23058 DeepMRMD:0.08855140209198;iRNA_m5C:0.999536712157815 23059 chr16 12662432 12662432 1 + C T ESCA 12662443 + 12662423 12662463 41 CAAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGG CAAACTGTCTCGGGGTCAGCCCCGGGAGACCCGCAACGTGG < 41bp 1 0.361674338712153 1 0.548347651958466 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662443 chr16:12662432 synonymous SNV . 0 10 hm5C_associated_SNPs_22102 0 0 0 0 1 Nucleus 1 0.500231643921093 0.903304696083068 0.999536712157815 hm5C_site_23059 DeepMRMD:0.903304696083068;iRNA_m5C:0.999536712157815 23060 chr16 12662432 12662432 1 + C T ESCA 12662444 + 12662424 12662464 41 AAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGA AAACTGTCTCGGGGTCAGCCCCGGGAGACCCGCAACGTGGA < 41bp 1 0.216951223210242 1 0.794898152351379 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662444 chr16:12662432 synonymous SNV . 0 9 hm5C_associated_SNPs_22103 0 0 0 0 1 Nucleus 1 0.500231644068729 0.410203695297242 0.999536711862542 hm5C_site_23060 DeepMRMD:0.410203695297242;iRNA_m5C:0.999536711862542 23061 chr6 170632194 170632194 1 + G A ESCA 170632211 + 170632191 170632231 41 GCAGAAAGCTACCTGGTGTACAACATCATGAGCAGTGGAGA GCAAAAAGCTACCTGGTGTACAACATCATGAGCAGTGGAGA < 41bp 1 0.521337845325533 1 0.122299343347549 experiment 0.957324309348935 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM120B ENSG00000112584 CDS Human protein_coding chr6:170632211 chr6:170632194 nonsynonymous SNV 0.523 3 4 hm5C_associated_SNPs_22105 0 0 0 0 1 Cytosol 1 0.500231643856685 1 0.99953671228663 hm5C_site_23061 DeepMRMD:1;iRNA_m5C:0.99953671228663 23062 chr11 110035171 110035171 1 + C T ESCA 110035177 + 110035157 110035197 41 CATGTCTAGAAATACGGCAGCCAAAACTGCAAACGAAGGAG CATGTCTAGAAATATGGCAGCCAAAACTGCAAACGAAGGAG < 41bp 1 0.181011601381569 1 0.368939191102982 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035177 chr11:110035171 nonsynonymous SNV 0.432 3 15 hm5C_associated_SNPs_22106 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921933 1 0.999536712156133 hm5C_site_23062 DeepMRMD:1;iRNA_m5C:0.999536712156133 23063 chr11 110035171 110035171 1 + C T ESCA 110035178 + 110035158 110035198 41 ATGTCTAGAAATACGGCAGCCAAAACTGCAAACGAAGGAGG ATGTCTAGAAATATGGCAGCCAAAACTGCAAACGAAGGAGG < 41bp 1 0.455670458679226 1 0.526619255542755 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035178 chr11:110035171 nonsynonymous SNV 0.432 3 14 hm5C_associated_SNPs_22107 0 0 0 0 0 Endoplasmic reticulum 1 0.500231623859074 0.94676148891449 0.999536752281852 hm5C_site_23063 DeepMRMD:0.94676148891449;iRNA_m5C:0.999536752281852 23064 chr1 200817241 200817241 1 + C A ESCA 200817245 + 200817225 200817265 41 CTCCAAACCGAGGAATCACTCGTTCTATTAGTAATGAAGGA CTCCAAACCGAGGAATAACTCGTTCTATTAGTAATGAAGGA < 41bp 1 0.0876240275333686 1 0.544316470623016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200817245 chr1:200817241 synonymous SNV . 0 17 hm5C_associated_SNPs_22108 0 0 1 0 1 chromatin 1 0.500231643921092 0.911367058753968 0.999536712157815 hm5C_site_23064 DeepMRMD:0.911367058753968;iRNA_m5C:0.999536712157815 23065 chr19 5691411 5691411 1 + G T ESCA 5691402 + 5691382 5691422 41 GCTTTGCCCCGTACGAGCGGCGCGCCATGGAGTTACTGAAG GCTTTGCCCCGTACGAGCGGCGCGCCATGTAGTTACTGAAG < 41bp 1 0.284569265115974 1 0.174855619668961 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691402 chr19:5691411 stopgain 0.953 0 30 hm5C_associated_SNPs_22109 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_23065 DeepMRMD:1;iRNA_m5C:0.999536712157813 23066 chr19 5691411 5691411 1 + G T ESCA 5691407 + 5691387 5691427 41 GCCCCGTACGAGCGGCGCGCCATGGAGTTACTGAAGGTCTC GCCCCGTACGAGCGGCGCGCCATGTAGTTACTGAAGGTCTC < 41bp 1 0.242821499290822 1 0.117192417383194 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691407 chr19:5691411 stopgain 0.953 0 25 hm5C_associated_SNPs_22110 0 0 1 0 0 Ribosome 1 0.500231897867057 1 0.999536204265887 hm5C_site_23066 DeepMRMD:1;iRNA_m5C:0.999536204265887 23067 chr19 5691411 5691411 1 + G T ESCA 5691427 + 5691407 5691447 41 CATGGAGTTACTGAAGGTCTCCAAGGACAAACGGGCCCTCA CATGTAGTTACTGAAGGTCTCCAAGGACAAACGGGCCCTCA < 41bp 1 0.390024222040496 1 0.948346257209778 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691427 chr19:5691411 stopgain 0.953 0 5 hm5C_associated_SNPs_22111 0 0 1 0 0 Ribosome 1 0.500231643921086 0.103307485580444 0.999536712157828 hm5C_site_23067 DeepMRMD:0.103307485580444;iRNA_m5C:0.999536712157828 23068 chr19 18255930 18255930 1 + G A ESCA 18255949 + 18255929 18255969 41 CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG CAGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG < 41bp 1 0.234921037468063 1 0.0739043354988098 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255949 chr19:18255930 nonsynonymous SNV 0.978 2 2 hm5C_associated_SNPs_22112 0 0 0 0 0 Cytosol 1 0.500231643959885 1 0.99953671208023 hm5C_site_23068 DeepMRMD:1;iRNA_m5C:0.99953671208023 23069 chr20 61292523 61292523 1 + C T ESCA 61292526 + 61292506 61292546 41 AAACCATCAGAGACCTGCCTCTGTAAGGACCGGAGTCGGGA AAACCATCAGAGACCTGTCTCTGTAAGGACCGGAGTCGGGA < 41bp 1 0.460953751077654 1 0.402170062065125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61292526 chr20:61292523 nonsynonymous SNV 0.719 2 18 hm5C_associated_SNPs_22113 0 0 1 1 1 Endoplasmic reticulum 1 0.500231644023372 1 0.999536711953256 hm5C_site_23069 DeepMRMD:1;iRNA_m5C:0.999536711953256 23070 chr22 23596130 23596130 1 + A T ESCA 23596125 + 23596105 23596145 41 AGCAGCAAGGGCAGGGGCAGCCGGGATGCGCTGGTCTCGGG AGCAGCAAGGGCAGGGGCAGCCGGGTTGCGCTGGTCTCGGG < 41bp 1 0.677886115924666 1 0.775119781494141 experiment 0.644227768150667 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23596125 chr22:23596130 nonsynonymous SNV 0.631 3 26 hm5C_associated_SNPs_22114 0 0 1 0 1 Ribosome 1 0.50023164392097 0.449760437011718 0.999536712158061 hm5C_site_23070 DeepMRMD:0.449760437011718;iRNA_m5C:0.999536712158061 23071 chr22 24237106 24237106 1 + G T ESCA 24237096 + 24237076 24237116 41 TACAGCAAGCTGCTGTGCGGCCTGCTGGCCGAGCGCCTGCG TACAGCAAGCTGCTGTGCGGCCTGCTGGCCTAGCGCCTGCG < 41bp 1 0.112844389867542 1 0.0822210013866425 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237096 chr22:24237106 stopgain 0.973 1 31 hm5C_associated_SNPs_22116 0 0 1 0 1 Ribosome 1 0.50023176477539 1 0.99953647044922 hm5C_site_23071 DeepMRMD:1;iRNA_m5C:0.99953647044922 23072 chr22 24237106 24237106 1 + G T ESCA 24237109 + 24237089 24237129 41 TGTGCGGCCTGCTGGCCGAGCGCCTGCGCATCAGCCCGGAC TGTGCGGCCTGCTGGCCTAGCGCCTGCGCATCAGCCCGGAC < 41bp 1 0.669682042380514 1 0.173516005277634 experiment 0.660635915238971 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237109 chr22:24237106 stopgain 0.973 1 18 hm5C_associated_SNPs_22117 0 0 1 0 1 Ribosome 1 0.500231643529307 1 0.999536712941385 hm5C_site_23072 DeepMRMD:1;iRNA_m5C:0.999536712941385 23073 chr22 24237106 24237106 1 + G T ESCA 24237117 + 24237097 24237137 41 CTGCTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGC CTGCTGGCCTAGCGCCTGCGCATCAGCCCGGACAGGTACGC < 41bp 1 0.567583018625638 1 0.174225598573685 experiment 0.864833962748725 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237117 chr22:24237106 stopgain 0.973 1 10 hm5C_associated_SNPs_22118 0 0 1 0 1 Ribosome 1 0.500231644720925 1 0.999536710558151 hm5C_site_23073 DeepMRMD:1;iRNA_m5C:0.999536710558151 23074 chr22 24237106 24237106 1 + G T ESCA 24237120 + 24237100 24237140 41 CTGGCCGAGCGCCTGCGCATCAGCCCGGACAGGTACGCGGA CTGGCCTAGCGCCTGCGCATCAGCCCGGACAGGTACGCGGA < 41bp 1 0.524970614864057 1 0.357412576675415 experiment 0.950058770271886 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237120 chr22:24237106 stopgain 0.973 1 7 hm5C_associated_SNPs_22119 0 0 1 0 1 Ribosome 1 0.500231643926054 1 0.999536712147891 hm5C_site_23074 DeepMRMD:1;iRNA_m5C:0.999536712147891 23075 chr14 102452280 102452280 1 + G C ESCA 102452273 + 102452253 102452293 41 TCACCGCTCGCCTTCGGGATCAGCTTGGCACAGCCAAGAAT TCACCGCTCGCCTTCGGGATCAGCTTGCCACAGCCAAGAAT < 41bp 1 0.156896246316759 1 0.195873200893402 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102452273 chr14:102452280 nonsynonymous SNV 0.975 1 28 hm5C_associated_SNPs_22120 0 0 1 0 0 Cytosol 1 0.500231643270926 1 0.999536713458149 hm5C_site_23075 DeepMRMD:1;iRNA_m5C:0.999536713458149 23076 chr4 53579529 53579529 1 + G A ESCA 53579509 + 53579489 53579529 41 GAGAAGAGACTGGAAAGCTCCTCTTTGGATCCTGTCTGGAG GAGAAGAGACTGGAAAGCTCCTCTTTGGATCCTGTCTGGAA < 41bp 1 0.233550792764716 1 0.189675658941269 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579509 chr4:53579529 . . 0 41 hm5C_associated_SNPs_22121 0 0 1 1 0 unknown 1 0.500231643923175 1 0.999536712153651 hm5C_site_23076 DeepMRMD:1;iRNA_m5C:0.999536712153651 23077 chr4 53579529 53579529 1 + G A ESCA 53579519 + 53579499 53579539 41 TGGAAAGCTCCTCTTTGGATCCTGTCTGGAGTCACAACTGA TGGAAAGCTCCTCTTTGGATCCTGTCTGGAATCACAACTGA < 41bp 1 0.0888531349011764 1 0.28423285484314 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579519 chr4:53579529 . . 0 31 hm5C_associated_SNPs_22122 0 0 1 1 0 unknown 1 0.500231643504125 1 0.999536712991751 hm5C_site_23077 DeepMRMD:1;iRNA_m5C:0.999536712991751 23078 chr4 53579529 53579529 1 + G A ESCA 53579520 + 53579500 53579540 41 GGAAAGCTCCTCTTTGGATCCTGTCTGGAGTCACAACTGAA GGAAAGCTCCTCTTTGGATCCTGTCTGGAATCACAACTGAA < 41bp 1 0.106759199714655 1 0.136604875326157 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579520 chr4:53579529 . . 0 30 hm5C_associated_SNPs_22123 0 0 1 1 0 unknown 1 0.500231651402421 1 0.999536697195159 hm5C_site_23078 DeepMRMD:1;iRNA_m5C:0.999536697195159 23079 chr4 53579529 53579529 1 + G A ESCA 53579531 + 53579511 53579551 41 CTTTGGATCCTGTCTGGAGTCACAACTGAACCAGAAAAAGT CTTTGGATCCTGTCTGGAATCACAACTGAACCAGAAAAAGT < 41bp 1 0.582844859955532 1 0.37837541103363 experiment 0.834310280088936 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579531 chr4:53579529 . . 0 19 hm5C_associated_SNPs_22124 0 0 1 1 0 unknown 1 0.500231643920992 1 0.999536712158017 hm5C_site_23079 DeepMRMD:1;iRNA_m5C:0.999536712158017 23080 chr4 53579529 53579529 1 + G A ESCA 53579536 + 53579516 53579556 41 GATCCTGTCTGGAGTCACAACTGAACCAGAAAAAGTTTCGT GATCCTGTCTGGAATCACAACTGAACCAGAAAAAGTTTCGT < 41bp 1 0.442063168160029 1 0.504998803138733 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579536 chr4:53579529 . . 0 14 hm5C_associated_SNPs_22125 0 0 1 1 0 unknown 1 0.500231643921092 0.990002393722534 0.999536712157815 hm5C_site_23080 DeepMRMD:0.990002393722534;iRNA_m5C:0.999536712157815 23081 chr6 126210540 126210540 1 + G A ESCA 126210539 + 126210519 126210559 41 TTTCTCTTGACCCAGAGGAACGAAAGAAAGCTGAGTCACAA TTTCTCTTGACCCAGAGGAACAAAAGAAAGCTGAGTCACAA < 41bp 1 0.524286506564112 1 0.498815447092056 experiment 0.951426986871776 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCOA7 ENSG00000111912 CDS Human protein_coding chr6:126210539 chr6:126210540 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_22126 0 0 1 0 0 Ribosome 1 0.500231643921943 1 0.999536712156114 hm5C_site_23081 DeepMRMD:1;iRNA_m5C:0.999536712156114 23082 chr15 40509785 40509785 1 + G T ESCA 40509796 + 40509776 40509816 41 GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGT GTGCAGCTGTATGTTTTTACCCTCAGCGGCTTTCGGACTGT < 41bp 1 0.330106641322102 1 0.0616757273674011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BUB1B ENSG00000156970 CDS Human protein_coding chr15:40509796 chr15:40509785 nonsynonymous SNV 0.995 2 10 hm5C_associated_SNPs_22127 0 0 1 0 2 Nucleus 1 0.500231643983937 1 0.999536712032126 hm5C_site_23082 DeepMRMD:1;iRNA_m5C:0.999536712032126 23083 chr15 40509785 40509785 1 + G T ESCA 40509802 + 40509782 40509822 41 CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT CTGTATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT < 41bp 1 0.365554031563449 1 0.582546353340149 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BUB1B ENSG00000156970 CDS Human protein_coding chr15:40509802 chr15:40509785 nonsynonymous SNV 0.995 2 4 hm5C_associated_SNPs_22128 0 0 1 0 2 Nucleus 1 0.500231643935937 0.834907293319702 0.999536712128125 hm5C_site_23083 DeepMRMD:0.834907293319702;iRNA_m5C:0.999536712128125 23084 chr7 142457375 142457375 1 + C G ESCA 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTGGTG < 41bp 1 0.0382867590790145 1 0.0283523499965668 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457375 nonsynonymous SNV 0.046 1 38 hm5C_associated_SNPs_22129 0 0 0 1 1 Cytosol 1 0.500231643920959 1 0.999536712158082 hm5C_site_23084 DeepMRMD:1;iRNA_m5C:0.999536712158082 23085 chr7 142457375 142457375 1 + C G ESCA 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTGGTGA < 41bp 1 0.174388506006905 1 0.317447125911713 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457375 nonsynonymous SNV 0.046 1 37 hm5C_associated_SNPs_22130 0 0 0 1 1 Cytosol 1 0.500231665003378 1 0.999536669993245 hm5C_site_23085 DeepMRMD:1;iRNA_m5C:0.999536669993245 23086 chr7 142457375 142457375 1 + C G ESCA 142457367 + 142457347 142457387 41 CCTGATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG CCTGATCCTTACCTTTGTGGCAGCTGCTGGTGAGTATCATG < 41bp 1 0.335676629416038 1 0.170626759529114 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457367 chr7:142457375 nonsynonymous SNV 0.046 1 29 hm5C_associated_SNPs_22131 0 0 0 1 1 Cytosol 1 0.500231643730996 1 0.999536712538009 hm5C_site_23086 DeepMRMD:1;iRNA_m5C:0.999536712538009 23087 chr7 142457375 142457375 1 + C G ESCA 142457370 + 142457350 142457390 41 GATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC GATCCTTACCTTTGTGGCAGCTGCTGGTGAGTATCATGCCC < 41bp 1 0.395646456349332 1 0.204790323972702 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457370 chr7:142457375 nonsynonymous SNV 0.046 1 26 hm5C_associated_SNPs_22132 0 0 0 1 1 Cytosol 1 0.500231642144366 1 0.999536715711269 hm5C_site_23087 DeepMRMD:1;iRNA_m5C:0.999536715711269 23088 chr7 142457375 142457375 1 + C G ESCA 142457373 + 142457353 142457393 41 CCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC CCTTACCTTTGTGGCAGCTGCTGGTGAGTATCATGCCCTGC < 41bp 1 0.638695516594574 1 0.32762399315834 experiment 0.722608966810853 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457373 chr7:142457375 nonsynonymous SNV 0.046 1 23 hm5C_associated_SNPs_22133 0 0 0 1 1 Cytosol 1 0.500231644960375 1 0.99953671007925 hm5C_site_23088 DeepMRMD:1;iRNA_m5C:0.99953671007925 23089 chr16 24818001 24818001 1 + A G ESCA 24817997 + 24817977 24818017 41 CACCATCTCAGCAGCAGCCACTCCATCAGCCAGCCATGAAG CACCATCTCAGCAGCAGCCACTCCGTCAGCCAGCCATGAAG < 41bp 1 0.506778180493674 1 0.827622771263123 experiment 0.986443639012652 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24817997 chr16:24818001 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_22135 0 0 0 0 0 Nucleus 1 0.500231643895367 0.344754457473754 0.999536712209266 hm5C_site_23089 DeepMRMD:0.344754457473754;iRNA_m5C:0.999536712209266 23090 chr19 50158059 50158059 1 + G T ESCA 50158043 + 50158023 50158063 41 CTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCGGGCT CTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCTGGCT < 41bp 1 0.106303238480293 1 0.125693291425705 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50158043 chr19:50158059 nonsynonymous SNV 0.974 4 37 hm5C_associated_SNPs_22136 0 0 1 0 1 Cytosol 1 0.500231643926731 1 0.999536712146538 hm5C_site_23090 DeepMRMD:1;iRNA_m5C:0.999536712146538 23091 chr3 183882071 183882071 1 + G A ESCA 183882074 + 183882054 183882094 41 GCTGGTGTCAGCTGAGGGCTCACACCCAGACCCAGCCCCCT GCTGGTGTCAGCTGAGGACTCACACCCAGACCCAGCCCCCT < 41bp 1 0.337662489208882 1 0.288376331329346 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882074 chr3:183882071 nonsynonymous SNV 0.997 4 18 hm5C_associated_SNPs_22137 0 0 1 0 1 Cytosol 1 0.500231634743842 1 0.999536730512316 hm5C_site_23091 DeepMRMD:1;iRNA_m5C:0.999536730512316 23092 chr20 3564710 3564710 1 + A G ESCA 3564722 + 3564702 3564742 41 GGAATGGTATACGATGAGCACCTGCCCCCGTAAGTGAAAAA GGAATGGTGTACGATGAGCACCTGCCCCCGTAAGTGAAAAA < 41bp 1 0.041832730421973 1 0.177984535694122 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3564722 chr20:3564710 nonsynonymous SNV 0.994 3 9 hm5C_associated_SNPs_22138 0 0 1 0 1 Ribosome 1 0.500231643922535 1 0.999536712154929 hm5C_site_23092 DeepMRMD:1;iRNA_m5C:0.999536712154929 23093 chrX 153627911 153627911 1 + G A ESCA 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATAAATAT < 41bp 1 0.249648014394724 1 0.445799082517624 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627911 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_22139 0 0 1 0 2 Cytosol 1 0.500231651511598 1 0.999536696976803 hm5C_site_23093 DeepMRMD:1;iRNA_m5C:0.999536696976803 23094 chr6 31708323 31708323 1 + C T ESCA 31708322 + 31708302 31708342 41 CCTCCTCCGGCTTCCCCAGCCCGGCCCCAGTGCCGGGCCCC CCTCCTCCGGCTTCCCCAGCCTGGCCCCAGTGCCGGGCCCC < 41bp 1 0.421719389813207 1 0.396922320127487 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31708322 chr6:31708323 nonsynonymous SNV 0.371 0 22 hm5C_associated_SNPs_22140 0 0 1 0 2 Cytosol 1 0.500231643919791 1 0.999536712160417 hm5C_site_23094 DeepMRMD:1;iRNA_m5C:0.999536712160417 23095 chr12 104492154 104492154 1 + A T ESCA 104492140 + 104492120 104492160 41 GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGTAAGCGG < 41bp 1 0.563052640764914 1 0.452411890029907 experiment 0.873894718470172 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104492140 chr12:104492154 stopgain 0.956 0 35 hm5C_associated_SNPs_22141 0 0 0 0 1 Cytosol 1 0.500231644084501 1 0.999536711830998 hm5C_site_23095 DeepMRMD:1;iRNA_m5C:0.999536711830998 23096 chr5 140573676 140573676 1 + G T ESCA 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGTTC < 41bp 1 0.223923974671274 1 0.0747222006320953 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573676 nonsynonymous SNV 0.004 1 39 hm5C_associated_SNPs_22142 0 0 0 0 0 exosome 1 0.500231643921169 1 0.999536712157662 hm5C_site_23096 DeepMRMD:1;iRNA_m5C:0.999536712157662 23097 chr21 30715103 30715103 1 + G T ESCA 30715122 + 30715102 30715142 41 GGATCTCAGATTTCTGTCAGCAGATGACTGATAAATGTACT GTATCTCAGATTTCTGTCAGCAGATGACTGATAAATGTACT < 41bp 1 0.232290484834575 1 0.714759290218353 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BACH1 ENSG00000156273 CDS Human protein_coding chr21:30715122 chr21:30715103 synonymous SNV . 0 2 hm5C_associated_SNPs_22144 0 0 1 0 0 Cytosol 1 0.500231110261883 0.570481419563294 0.999537779476235 hm5C_site_23097 DeepMRMD:0.570481419563294;iRNA_m5C:0.999537779476235 23098 chr15 65855215 65855215 1 + G C ESCA 65855212 + 65855192 65855232 41 CTGACTGTGCGATTCTGTATCTTGGGAAAAGGCAAGTAAGA CTGACTGTGCGATTCTGTATCTTCGGAAAAGGCAAGTAAGA < 41bp 1 0.36276845220501 1 0.129317730665207 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HACD3 ENSG00000074696 CDS Human protein_coding chr15:65855212 chr15:65855215 nonsynonymous SNV 0.962 0 24 hm5C_associated_SNPs_22145 0 0 1 0 0 Ribosome 1 0.500231643840932 1 0.999536712318137 hm5C_site_23098 DeepMRMD:1;iRNA_m5C:0.999536712318137 23099 chr20 39795158 39795158 1 + G T ESCA 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCTGAGCACATTCTAATGCGCG < 41bp 1 0.321149486432559 1 0.248672395944595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795158 nonsynonymous SNV 0.991 3 31 hm5C_associated_SNPs_22146 0 0 0 0 2 Cytosol 1 0.500231644296804 1 0.999536711406392 hm5C_site_23099 DeepMRMD:1;iRNA_m5C:0.999536711406392 23100 chr1 154215741 154215741 1 + C G ESCA 154215745 + 154215725 154215765 41 TGTGTCTTCAGTGCCTCTGCCTGCGGAGAATGTGACAATCA TGTGTCTTCAGTGCCTGTGCCTGCGGAGAATGTGACAATCA < 41bp 1 0.609638791334067 1 0.394097447395325 experiment 0.780722417331867 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154215745 chr1:154215741 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_22147 0 0 1 0 1 Nucleus 1 0.500240640719216 1 0.999518718561567 hm5C_site_23100 DeepMRMD:1;iRNA_m5C:0.999518718561567 23101 chr2 232573421 232573421 1 + C G ESCA 232573427 + 232573407 232573447 41 GTGCCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCG GTGCCCCACCATGTGAGACGCAGCCGTAGACACCAGCTCCG < 41bp 1 0.640325752114176 1 0.365342646837234 experiment 0.719348495771649 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232573427 chr2:232573421 stopgain 0.999 0 15 hm5C_associated_SNPs_22148 0 0 1 0 1 Ribosome 1 0.500231345196885 1 0.999537309606231 hm5C_site_23101 DeepMRMD:1;iRNA_m5C:0.999537309606231 23102 chr2 232573421 232573421 1 + C G ESCA 232573430 + 232573410 232573450 41 CCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCGAAA CCCCACCATGTGAGACGCAGCCGTAGACACCAGCTCCGAAA < 41bp 1 0.545452027740186 1 0.300918936729431 experiment 0.909095944519628 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232573430 chr2:232573421 stopgain 0.999 0 12 hm5C_associated_SNPs_22149 0 0 1 0 1 Ribosome 1 0.500231511686874 1 0.999536976626252 hm5C_site_23102 DeepMRMD:1;iRNA_m5C:0.999536976626252 23103 chr19 45162124 45162124 1 + A G ESCA 45162140 + 45162120 45162160 41 TCCAAATGTTCCCGTGAGGTCCTTTGGCACTGTCATCTGTG TCCAGATGTTCCCGTGAGGTCCTTTGGCACTGTCATCTGTG < 41bp 1 0.0274694707269061 1 0.0441912114620209 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162140 chr19:45162124 nonsynonymous SNV 0.000 1 5 hm5C_associated_SNPs_22152 0 0 1 0 1 Ribosome 1 0.50023167745182 1 0.99953664509636 hm5C_site_23103 DeepMRMD:1;iRNA_m5C:0.99953664509636 23104 chr3 66419918 66419918 1 + A C ESCA 66419929 + 66419909 66419949 41 TGCCGCTGCAGTCACCACCCCTCTAGACGTGGCAAAGACAA TGCCGCTGCCGTCACCACCCCTCTAGACGTGGCAAAGACAA < 41bp 1 0.437824611901647 1 0.845970630645752 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control SLC25A26 ENSG00000144741 CDS Human protein_coding chr3:66419929 chr3:66419918 synonymous SNV . 0 10 hm5C_associated_SNPs_22153 0 0 1 0 2 Ribosome 1 0.500231643921092 0.308058738708496 0.999536712157815 hm5C_site_23104 DeepMRMD:0.308058738708496;iRNA_m5C:0.999536712157815 23105 chr5 140182594 140182594 1 + C T ESCA 140182596 + 140182576 140182616 41 TGCAGACTCAGGCTACAACGCGTGGCTTTCGTATGAGCTGC TGCAGACTCAGGCTACAATGCGTGGCTTTCGTATGAGCTGC < 41bp 1 0.46269799473572 1 0.445537388324738 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PCDHA3 ENSG00000255408 CDS Human protein_coding chr5:140182596 chr5:140182594 synonymous SNV . 0 19 hm5C_associated_SNPs_22154 0 0 0 0 0 insoluble cytoplasm 1 0.500231639931229 1 0.999536720137541 hm5C_site_23105 DeepMRMD:1;iRNA_m5C:0.999536720137541 23106 chr14 56233183 56233183 1 + C A ESCA 56233191 + 56233171 56233211 41 GACCAAGCGAGGCCATGCCTCCCTGGACTGCCTCAAGGTGT GACCAAGCGAGGACATGCCTCCCTGGACTGCCTCAAGGTGT < 41bp 1 0.310845089611025 1 0.258579134941101 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233191 chr14:56233183 . . 0 13 hm5C_associated_SNPs_22155 0 0 0 0 0 unknown 1 0.500231644034694 1 0.999536711930612 hm5C_site_23106 DeepMRMD:1;iRNA_m5C:0.999536711930612 23107 chr17 64299001 64299001 1 + C T ESCA 64298985 + 64298965 64299005 41 GGACCATGGCTGACGTTTTCCCGGGCAACGACTCCACGGCG GGACCATGGCTGACGTTTTCCCGGGCAACGACTCCATGGCG < 41bp 1 0.675925080160651 1 0.816924095153809 experiment 0.648149839678698 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64298985 chr17:64299001 nonsynonymous SNV 0.999 1 37 hm5C_associated_SNPs_22156 0 0 1 0 0 Ribosome 1 0.500231640764915 0.366151809692382 0.99953671847017 hm5C_site_23107 DeepMRMD:0.366151809692382;iRNA_m5C:0.99953671847017 23108 chr12 13232915 13232915 1 + G C ESCA 13232896 + 13232876 13232916 41 CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTAGG CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTACG < 41bp 1 0.52722015181533 1 0.213467180728912 experiment 0.945559696369339 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232896 chr12:13232915 nonsynonymous SNV 0.995 4 40 hm5C_associated_SNPs_22158 0 0 0 1 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23108 DeepMRMD:1;iRNA_m5C:0.999536712157815 23109 chr7 129046266 129046266 1 + G T ESCA 129046285 + 129046265 129046305 41 TGTATGTAACTGAAATTGACCCCATCTGTGCCCTGCAAGCC TTTATGTAACTGAAATTGACCCCATCTGTGCCCTGCAAGCC < 41bp 1 0.117911267163725 1 0.0366106331348419 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129046285 chr7:129046266 synonymous SNV . 0 2 hm5C_associated_SNPs_22159 0 0 1 0 2 chromatin 1 0.500231643923828 1 0.999536712152345 hm5C_site_23109 DeepMRMD:1;iRNA_m5C:0.999536712152345 23110 chr3 142840873 142840873 1 + G T ESCA 142840885 + 142840865 142840905 41 GCTAAGACGCTGCAGACAGCCCTGCAGCCCCCTGACTGGCT GCTAAGACTCTGCAGACAGCCCTGCAGCCCCCTGACTGGCT < 41bp 1 0.0949953522155036 1 0.0583363771438599 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840885 chr3:142840873 synonymous SNV . 0 9 hm5C_associated_SNPs_22160 0 0 0 0 0 cytosol 1 0.500231643933306 1 0.999536712133387 hm5C_site_23110 DeepMRMD:1;iRNA_m5C:0.999536712133387 23111 chr3 142840873 142840873 1 + G T ESCA 142840893 + 142840873 142840913 41 GCTGCAGACAGCCCTGCAGCCCCCTGACTGGCTGCAGGGCC TCTGCAGACAGCCCTGCAGCCCCCTGACTGGCTGCAGGGCC < 41bp 1 0.263609892718455 1 0.0825974643230438 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840893 chr3:142840873 synonymous SNV . 0 1 hm5C_associated_SNPs_22161 0 0 0 0 0 cytosol 1 0.500231640817866 1 0.999536718364268 hm5C_site_23111 DeepMRMD:1;iRNA_m5C:0.999536718364268 23112 chr1 168154083 168154083 1 + G T ESCA 168154103 + 168154083 168154123 41 GGGAACCTTACTTGGAGAATCTCTTAAGTTAAAGGTAAATC TGGAACCTTACTTGGAGAATCTCTTAAGTTAAAGGTAAATC < 41bp 1 0.23452677856384 1 0.0886828303337097 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TIPRL ENSG00000143155 CDS Human protein_coding chr1:168154103 chr1:168154083 nonsynonymous SNV 0.993 3 1 hm5C_associated_SNPs_22162 0 0 1 0 2 Ribosome 1 0.50023164392109 1 0.999536712157821 hm5C_site_23112 DeepMRMD:1;iRNA_m5C:0.999536712157821 23113 chr12 21207483 21207483 1 + G T ESCA 21207493 + 21207473 21207513 41 GCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT GCTTGTACAATGAAATCTTACGTTTATTTTGTAATTCAAGT < 41bp 1 0.0806465111492169 1 0.0696620941162109 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207493 chr12:21207483 nonsynonymous SNV 0.003 0 11 hm5C_associated_SNPs_22163 0 0 0 0 2 nucleus 1 0.500231652630041 1 0.999536694739917 hm5C_site_23113 DeepMRMD:1;iRNA_m5C:0.999536694739917 23114 chr16 29810459 29810459 1 + G A ESCA 29810478 + 29810458 29810498 41 CGGCTCAACCAGCGCTCCTCCCGCAGTCATGCTGTGCTCCT CAGCTCAACCAGCGCTCCTCCCGCAGTCATGCTGTGCTCCT < 41bp 1 0.615998948232472 1 0.142852038145065 experiment 0.768002103535055 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29810478 chr16:29810459 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_22164 0 0 0 0 1 Cytosol 1 0.50023164641017 1 0.999536707179661 hm5C_site_23114 DeepMRMD:1;iRNA_m5C:0.999536707179661 23115 chr19 41807528 41807528 1 + G A ESCA 41807534 + 41807514 41807554 41 TTTGTCCCACTGACGAGGACCTAAAAGACCGAACAATAAAG TTTGTCCCACTGACAAGGACCTAAAAGACCGAACAATAAAG < 41bp 1 0.335191764872285 1 0.181960910558701 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41807534 chr19:41807528 nonsynonymous SNV 0.996 4 15 hm5C_associated_SNPs_22166 0 0 1 0 2 Cytosol 1 0.500230055623874 1 0.999539888752252 hm5C_site_23115 DeepMRMD:1;iRNA_m5C:0.999539888752252 23116 chr3 184106421 184106421 1 + T C ESCA 184106407 + 184106387 184106427 41 CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGATGGGCCC CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGACGGGCCC < 41bp 1 0.20073021272677 1 0.129803776741028 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184106407 chr3:184106421 synonymous SNV . 0 35 hm5C_associated_SNPs_22167 0 0 1 0 1 nucleus 1 0.500231646150449 1 0.999536707699101 hm5C_site_23116 DeepMRMD:1;iRNA_m5C:0.999536707699101 23117 chr6 53660182 53660182 1 + T A ESCA 53660192 + 53660172 53660212 41 GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGA GAGCTGCTGCAGGACGCCAACCAGCTCCGCGAGCTGCCCGA < 41bp 1 0.508881431978997 1 0.237465113401413 experiment 0.982237136042006 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660192 chr6:53660182 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_22168 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23117 DeepMRMD:1;iRNA_m5C:0.999536712157815 23118 chrX 154005130 154005130 1 + G A ESCA 154005135 + 154005115 154005155 41 AAAAGAGGTAGAATTGGTTTCTGAGTAGTGAAGGCCACTTG AAAAGAGGTAGAATTAGTTTCTGAGTAGTGAAGGCCACTTG < 41bp 1 0.637270628817031 1 0.539683163166046 experiment 0.725458742365938 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 CDS Human protein_coding chrX:154005135 chrX:154005130 synonymous SNV . 0 16 hm5C_associated_SNPs_22170 0 0 1 0 1 Cytosol 1 0.500231643218935 0.920633673667908 0.999536713562131 hm5C_site_23118 DeepMRMD:0.920633673667908;iRNA_m5C:0.999536713562131 23119 chr6 73332285 73332285 1 + G A ESCA 73332282 + 73332262 73332302 41 GTACAACGTGCTGGAGAGACCCCGCGGCTGGGCGTTCATCT GTACAACGTGCTGGAGAGACCCCACGGCTGGGCGTTCATCT < 41bp 1 0.196147889653492 1 0.24203622341156 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNQ5 ENSG00000185760 CDS Human protein_coding chr6:73332282 chr6:73332285 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_22171 0 0 0 0 1 chromatin 1 0.500231643922255 1 0.99953671215549 hm5C_site_23119 DeepMRMD:1;iRNA_m5C:0.99953671215549 23120 chr12 56428846 56428846 1 + G A ESCA 56428827 + 56428807 56428847 41 ACCATTGTGGTGGGCCGGCACAGTCCTGCCTACGCCAAAGA ACCATTGTGGTGGGCCGGCACAGTCCTGCCTACGCCAAAAA < 41bp 1 0.295076832601214 1 0.35183447599411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56428827 chr12:56428846 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_22172 0 0 0 0 0 Cytosol 1 0.500231643922748 1 0.999536712154504 hm5C_site_23120 DeepMRMD:1;iRNA_m5C:0.999536712154504 23121 chr6 26124548 26124548 1 + C T ESCA 26124556 + 26124536 26124576 41 TTCCCGGTGGGCCGAGTGCACCGCCTGCTCCGTAAAGGCAA TTCCCGGTGGGCTGAGTGCACCGCCTGCTCCGTAAAGGCAA < 41bp 1 0.587472827943628 1 0.1579270362854 experiment 0.825054344112745 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AC ENSG00000180573 CDS Human protein_coding chr6:26124556 chr6:26124548 stopgain 0.804 0 13 hm5C_associated_SNPs_22173 0 0 1 0 0 Ribosome 1 0.50023164392119 1 0.99953671215762 hm5C_site_23121 DeepMRMD:1;iRNA_m5C:0.99953671215762 23122 chr13 27216440 27216440 1 + G A ESCA 27216436 + 27216416 27216456 41 AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAG AGTGAAGAGGAACATTGAGCCCCGACACTTGTGCCGGGGAG < 41bp 1 0.651603526382532 1 0.457972764968872 experiment 0.696792947234936 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216436 chr13:27216440 synonymous SNV . 0 25 hm5C_associated_SNPs_22174 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23122 DeepMRMD:1;iRNA_m5C:0.999536712157815 23123 chr13 27216440 27216440 1 + G A ESCA 27216437 + 27216417 27216457 41 GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGC GTGAAGAGGAACATTGAGCCCCGACACTTGTGCCGGGGAGC < 41bp 1 0.0945234657365612 1 0.489723443984985 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216437 chr13:27216440 synonymous SNV . 0 24 hm5C_associated_SNPs_22175 0 0 1 0 1 cytosol 1 0.500307937982719 1 0.999384124034562 hm5C_site_23123 DeepMRMD:1;iRNA_m5C:0.999384124034562 23124 chr13 27216440 27216440 1 + G A ESCA 27216438 + 27216418 27216458 41 TGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCT TGAAGAGGAACATTGAGCCCCGACACTTGTGCCGGGGAGCT < 41bp 1 0.434213670726278 1 0.329796999692917 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216438 chr13:27216440 synonymous SNV . 0 23 hm5C_associated_SNPs_22176 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23124 DeepMRMD:1;iRNA_m5C:0.999536712157815 23125 chr13 27216440 27216440 1 + G A ESCA 27216441 + 27216421 27216461 41 AGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCTCTG AGAGGAACATTGAGCCCCGACACTTGTGCCGGGGAGCTCTG < 41bp 1 0.255508848027965 1 0.0860132873058319 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216441 chr13:27216440 synonymous SNV . 0 20 hm5C_associated_SNPs_22177 0 0 1 0 1 cytosol 1 0.500231643924498 1 0.999536712151005 hm5C_site_23125 DeepMRMD:1;iRNA_m5C:0.999536712151005 23126 chr6 116757008 116757008 1 + T G ESCA 116756988 + 116756968 116757008 41 TTAATGCAGGGCATGAACATCCTGATCAAAACTCATTTACT TTAATGCAGGGCATGAACATCCTGATCAAAACTCATTTACG < 41bp 1 0.171655222652475 1 0.129277735948563 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DSE ENSG00000111817 CDS Human protein_coding chr6:116756988 chr6:116757008 synonymous SNV . 0 41 hm5C_associated_SNPs_22179 0 0 1 0 0 nucleolus 1 0.500231643921093 1 0.999536712157815 hm5C_site_23126 DeepMRMD:1;iRNA_m5C:0.999536712157815 23127 chr1 93988967 93988967 1 + A C ESCA 93988959 + 93988939 93988979 41 AGTTAAATGACTATGCAGGACAGCGAGAAGTTGTAGCAGAA AGTTAAATGACTATGCAGGACAGCGAGACGTTGTAGCAGAA < 41bp 1 0.575677436908341 1 0.239980399608612 experiment 0.848645126183317 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:93988959 chr1:93988967 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_22180 0 0 1 0 2 Nucleus 1 0.500232521662393 1 0.999534956675214 hm5C_site_23127 DeepMRMD:1;iRNA_m5C:0.999534956675214 23128 chr1 206858691 206858691 1 + C G ESCA 206858686 + 206858666 206858706 41 CCCCGGCGCAGCCGCCGCCGCCGCCCCCGCAGCAGTTCCCG CCCCGGCGCAGCCGCCGCCGCCGCCGCCGCAGCAGTTCCCG < 41bp 1 0.416708572400731 1 0.448826521635056 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206858686 chr1:206858691 synonymous SNV . 0 26 hm5C_associated_SNPs_22181 0 0 1 0 0 Ribosome 1 0.500231648077161 1 0.999536703845677 hm5C_site_23128 DeepMRMD:1;iRNA_m5C:0.999536703845677 23129 chr19 55817695 55817695 1 + G A ESCA 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC ATCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC < 41bp 1 0.113961598349523 1 0.167536675930023 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817695 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_22182 0 0 0 0 1 chromatin 1 0.500231644120487 1 0.999536711759027 hm5C_site_23129 DeepMRMD:1;iRNA_m5C:0.999536711759027 23130 chr6 160481680 160481680 1 + C T ESCA 160481661 + 160481641 160481681 41 AAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCCG AAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCTG < 41bp 1 0.184973074562655 1 0.254718065261841 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160481661 chr6:160481680 stopgain 0.930 0 40 hm5C_associated_SNPs_22183 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23130 DeepMRMD:1;iRNA_m5C:0.999536712157815 23131 chr11 120317153 120317153 1 + C T ESCA 120317136 + 120317116 120317156 41 GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCCACT GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCTACT < 41bp 1 0.349677481413439 1 0.383312284946442 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120317136 chr11:120317153 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_22184 0 0 1 0 2 Cytosol 1 0.50023164434061 1 0.999536711318781 hm5C_site_23131 DeepMRMD:1;iRNA_m5C:0.999536711318781 23132 chr11 68125233 68125233 1 + A T ESCA 68125248 + 68125228 68125268 41 TGACCATCGACCTGGAGGAGCAGAAGCTCTACTGGGCTGAC TGACCTTCGACCTGGAGGAGCAGAAGCTCTACTGGGCTGAC < 41bp 1 0.455140885972006 1 0.73647153377533 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68125248 chr11:68125233 nonsynonymous SNV 0.997 3 6 hm5C_associated_SNPs_22186 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921105 0.52705693244934 0.99953671215779 hm5C_site_23132 DeepMRMD:0.52705693244934;iRNA_m5C:0.99953671215779 23133 chr6 33653581 33653581 1 + G C ESCA 33653599 + 33653579 33653619 41 GTGAGAACCACAACCGGGACCTGCAGGTGAGTGCCTCGCCA GTCAGAACCACAACCGGGACCTGCAGGTGAGTGCCTCGCCA < 41bp 1 0.664419652019428 1 0.353342026472092 experiment 0.671160695961143 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33653599 chr6:33653581 nonsynonymous SNV 0.979 5 3 hm5C_associated_SNPs_22187 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643916902 1 0.999536712166196 hm5C_site_23133 DeepMRMD:1;iRNA_m5C:0.999536712166196 23134 chr22 26242238 26242238 1 + C G ESCA 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATGAAGC < 41bp 1 0.296903699855675 1 0.251311957836151 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242238 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_22188 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_23134 DeepMRMD:1;iRNA_m5C:0.999536712157815 23135 chr11 46895129 46895129 1 + G A ESCA 46895143 - 46895123 46895163 41 ACACTGGGCTCTCCCCAAGGCGAGCAGACCTGAACGGCAGC ACACTGGGCTCTCCCCAAGGCGAGCAGACCTGAATGGCAGC < 41bp 1 0.19453163156714 1 0.551026880741119 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP4 ENSG00000134569 CDS Human protein_coding chr11:46895143 chr11:46895129 synonymous SNV . 0 35 hm5C_associated_SNPs_22189 0 0 1 0 1 cytosol 1 0.500231643921092 0.897946238517762 0.999536712157815 hm5C_site_23135 DeepMRMD:0.897946238517762;iRNA_m5C:0.999536712157815 23136 chr10 103912168 103912168 1 + A T ESCA 103912153 + 103912133 103912173 41 CGTCGACAACGGTAGTGACGCGTATTGCCTGGAGGATGGCG CGTCGACAACGGTAGTGACGCGTATTGCCTGGAGGTTGGCG < 41bp 1 0.378413420800392 1 0.0297959446907043 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103912153 chr10:103912168 nonsynonymous SNV 0.830 3 36 hm5C_associated_SNPs_22190 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_23136 DeepMRMD:1;iRNA_m5C:0.999536712157814 23137 chr17 65905779 65905779 1 + C T ESCA 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG AATAAAAATAGAGCTTGATTCTGAAAAAGATGAGGTAAAAG < 41bp 1 0.425105024519386 1 0.726307511329651 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905779 nonsynonymous SNV 0.945 0 15 hm5C_associated_SNPs_22191 0 0 1 0 2 Cytosol 1 0.500231643921074 0.547384977340698 0.999536712157853 hm5C_site_23137 DeepMRMD:0.547384977340698;iRNA_m5C:0.999536712157853 23138 chr19 54377333 54377333 1 + G T ESCA 54377326 + 54377306 54377346 41 CTGCTGAAGGTGCTGGAGACCTTCGTTGCCTGCATCATCTT CTGCTGAAGGTGCTGGAGACCTTCGTTTCCTGCATCATCTT < 41bp 1 0.378877289600391 1 0.375383853912354 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYADM ENSG00000179820 CDS Human protein_coding chr19:54377326 chr19:54377333 nonsynonymous SNV 0.993 4 28 hm5C_associated_SNPs_22192 0 0 1 0 0 Nucleus 1 0.500231643921108 1 0.999536712157784 hm5C_site_23138 DeepMRMD:1;iRNA_m5C:0.999536712157784 23139 chr19 50912814 50912814 1 + G A ESCA 50912807 + 50912787 50912827 41 AGCTGGCCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTG AGCTGGCCAAGGAGACAGACCCCCTCCAGCGCCAGGTCCTG < 41bp 1 0.159349317039599 1 0.0230896174907684 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912807 chr19:50912814 nonsynonymous SNV 0.993 2 28 hm5C_associated_SNPs_22193 1 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23139 DeepMRMD:1;iRNA_m5C:0.999536712157815 Colorectal cancer 10 Colorectal cancer 10 23140 chr19 50912814 50912814 1 + G A ESCA 50912813 + 50912793 50912833 41 CCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTGGATGGA CCAAGGAGACAGACCCCCTCCAGCGCCAGGTCCTGGATGGA < 41bp 1 0.426850790666138 1 0.649918854236603 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912813 chr19:50912814 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_22194 1 0 1 0 1 Nucleus 1 0.500231643828043 0.700162291526794 0.999536712343913 hm5C_site_23140 DeepMRMD:0.700162291526794;iRNA_m5C:0.999536712343913 Colorectal cancer 10 Colorectal cancer 10 23141 chr9 91930118 91930118 1 + A G ESCA 91930099 + 91930079 91930119 41 TAACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAG TAACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAGG < 41bp 1 0.601350362219801 1 0.248172223567963 experiment 0.797299275560398 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930099 chr9:91930118 synonymous SNV . 0 40 hm5C_associated_SNPs_22195 0 0 1 0 2 Ribosome 1 0.500231643683197 1 0.999536712633607 hm5C_site_23141 DeepMRMD:1;iRNA_m5C:0.999536712633607 23142 chr9 91930118 91930118 1 + A G ESCA 91930100 + 91930080 91930120 41 AACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAGT AACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAGGT < 41bp 1 0.52654876797654 1 0.572045683860779 experiment 0.946902464046921 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930100 chr9:91930118 synonymous SNV . 0 39 hm5C_associated_SNPs_22196 0 0 1 0 2 Ribosome 1 0.500231643714768 0.855908632278442 0.999536712570464 hm5C_site_23142 DeepMRMD:0.855908632278442;iRNA_m5C:0.999536712570464 23143 chr12 53685797 53685797 1 + G A ESCA 53685807 + 53685787 53685827 41 GGGAAAGCATGCCCAGCCTCCAAGCACTGCCTGTCACCCGG GGGAAAGCATACCCAGCCTCCAAGCACTGCCTGTCACCCGG < 41bp 1 0.287977297825538 1 0.375829219818115 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53685807 chr12:53685797 nonsynonymous SNV 0.998 0 11 hm5C_associated_SNPs_22197 0 0 0 0 2 Nucleus 1 0.500231643884435 1 0.999536712231129 hm5C_site_23143 DeepMRMD:1;iRNA_m5C:0.999536712231129 23144 chr20 42695425 42695425 1 + C T ESCA 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCTATCCAA < 41bp 1 0.424748541022886 1 0.110459685325623 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695425 nonsynonymous SNV 0.918 1 35 hm5C_associated_SNPs_22198 0 0 0 0 2 exosome 1 0.500231643921069 1 0.999536712157861 hm5C_site_23144 DeepMRMD:1;iRNA_m5C:0.999536712157861 23145 chr15 36984338 36984338 1 + C T ESCA 36984350 + 36984330 36984370 41 ATTGTGAACGACTGCTGTTACGGACCACTAGTGGACTGCAT ATTGTGAATGACTGCTGTTACGGACCACTAGTGGACTGCAT < 41bp 1 0.49434958891814 1 0.815479755401611 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36984350 chr15:36984338 synonymous SNV . 0 9 hm5C_associated_SNPs_22199 0 0 0 0 2 Cytosol 1 0.500231643853239 0.369040489196778 0.999536712293522 hm5C_site_23145 DeepMRMD:0.369040489196778;iRNA_m5C:0.999536712293522 23146 chr21 33040846 33040846 1 + C T ESCA 33040833 + 33040813 33040853 41 AGGTGGAAATGAAGAAAGTACAAAGACAGGAAACGCTGGAA AGGTGGAAATGAAGAAAGTACAAAGACAGGAAATGCTGGAA < 41bp 1 0.647242788169217 1 0.345230102539062 experiment 0.705514423661566 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SOD1 ENSG00000142168 CDS Human protein_coding chr21:33040833 chr21:33040846 synonymous SNV . 0 34 hm5C_associated_SNPs_22200 0 0 1 0 1 Ribosome 1 0.500231643921102 1 0.999536712157797 hm5C_site_23146 DeepMRMD:1;iRNA_m5C:0.999536712157797 23147 chr8 22862121 22862121 1 + A G ESCA 22862102 + 22862082 22862122 41 GCTGGCCACGCATGTGCCCACAGTATGGGCCATCGACCAAT GCTGGCCACGCATGTGCCCACAGTATGGGCCATCGACCAGT < 41bp 1 0.670148012971052 1 0.170883327722549 experiment 0.659703974057896 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862102 chr8:22862121 synonymous SNV . 0 40 hm5C_associated_SNPs_22201 0 0 0 0 1 cytosol 1 0.500231523150188 1 0.999536953699624 hm5C_site_23147 DeepMRMD:1;iRNA_m5C:0.999536953699624 23148 chr5 86669996 86669996 1 + T C ESCA 86670013 + 86669993 86670033 41 TTTTACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT TTTCACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT < 41bp 1 0.203766806602451 1 0.256947875022888 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86670013 chr5:86669996 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_22202 0 0 0 2 1 Nucleus 1 0.500231643891933 1 0.999536712216134 hm5C_site_23148 DeepMRMD:1;iRNA_m5C:0.999536712216134 23149 chr12 54394172 54394172 1 + C T ESCA 54394180 + 54394160 54394200 41 GCACGTCGTGGGCGCCCGTGCCCTCTCAGTCGTCCGTGGTA GCACGTCGTGGGTGCCCGTGCCCTCTCAGTCGTCCGTGGTA < 41bp 1 0.178651469619984 1 0.047094315290451 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54394180 chr12:54394172 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_22203 0 0 1 0 0 chromatin 1 0.500231644023822 1 0.999536711952356 hm5C_site_23149 DeepMRMD:1;iRNA_m5C:0.999536711952356 23150 chr19 36212475 36212475 1 + G T ESCA 36212461 + 36212441 36212481 41 CACAGACACAGGCTCAGCTACTGCAGCCCCTGCAGGCCTTG CACAGACACAGGCTCAGCTACTGCAGCCCCTGCATGCCTTG < 41bp 1 0.462796775735764 1 0.452970594167709 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36212461 chr19:36212475 nonsynonymous SNV 0.693 2 35 hm5C_associated_SNPs_22205 0 0 1 0 0 chromatin 1 0.500231643922242 1 0.999536712155516 hm5C_site_23150 DeepMRMD:1;iRNA_m5C:0.999536712155516 23151 chr14 61275047 61275047 1 + C T ESCA 61275055 + 61275035 61275075 41 TAATGCAGTTTTCAACTTGACCAACAATGTGGATTTGGACA TAATGCAGTTTTTAACTTGACCAACAATGTGGATTTGGACA < 41bp 1 0.0614132731357404 1 0.0540232360363007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61275055 chr14:61275047 synonymous SNV . 0 13 hm5C_associated_SNPs_22207 0 0 1 0 2 Ribosome 1 0.500231642253457 1 0.999536715493085 hm5C_site_23151 DeepMRMD:1;iRNA_m5C:0.999536715493085 23152 chr19 48833676 48833676 1 + C T ESCA 48833670 + 48833650 48833690 41 TTCGCCCTGGCCTGGGTGGCCTTCCCCCTCGCCCTGGTCAG TTCGCCCTGGCCTGGGTGGCCTTCCCTCTCGCCCTGGTCAG < 41bp 1 0.403652969583138 1 0.0373515486717224 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48833670 chr19:48833676 nonsynonymous SNV 0.994 0 27 hm5C_associated_SNPs_22209 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23152 DeepMRMD:1;iRNA_m5C:0.999536712157815 23153 chr19 48833676 48833676 1 + C T ESCA 48833674 + 48833654 48833694 41 CCCTGGCCTGGGTGGCCTTCCCCCTCGCCCTGGTCAGCGGC CCCTGGCCTGGGTGGCCTTCCCTCTCGCCCTGGTCAGCGGC < 41bp 1 0.252016222942733 1 0.186535805463791 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48833674 chr19:48833676 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_22210 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921095 1 0.999536712157809 hm5C_site_23153 DeepMRMD:1;iRNA_m5C:0.999536712157809 23154 chr6 30312963 30312963 1 + G A ESCA 30312944 + 30312924 30312964 41 CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTGA CGGGAGGCCCTGGAGCGCGGCGGTGATGGCGGGGCCGGTAA < 41bp 1 0.553666201961373 1 0.523993194103241 experiment 0.892667596077255 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPP21 ENSG00000241370 CDS Human protein_coding chr6:30312944 chr6:30312963 synonymous SNV . 0 40 hm5C_associated_SNPs_22212 0 0 1 0 1 Cytosol 1 0.500231643920589 0.952013611793518 0.999536712158822 hm5C_site_23154 DeepMRMD:0.952013611793518;iRNA_m5C:0.999536712158822 23155 chr19 42793154 42793154 1 + C T ESCA 42793148 + 42793128 42793168 41 GCTACACACAGTTGGGGGACCTGGCTCAGCCCGGCCCCGAG GCTACACACAGTTGGGGGACCTGGCTTAGCCCGGCCCCGAG < 41bp 1 0.683246763500597 1 0.847815215587616 experiment 0.633506472998806 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42793148 chr19:42793154 nonsynonymous SNV 0.998 2 27 hm5C_associated_SNPs_22213 0 0 1 0 1 Cytosol 1 0.500231643921092 0.304369568824768 0.999536712157815 hm5C_site_23155 DeepMRMD:0.304369568824768;iRNA_m5C:0.999536712157815 23156 chr19 42793154 42793154 1 + C T ESCA 42793173 + 42793153 42793193 41 TCAGCCCGGCCCCGAGCTTTCTCCCACAGCGGGGTACACAG TTAGCCCGGCCCCGAGCTTTCTCCCACAGCGGGGTACACAG < 41bp 1 0.487692445284336 1 0.233020633459091 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42793173 chr19:42793154 nonsynonymous SNV 0.998 2 2 hm5C_associated_SNPs_22214 0 0 1 0 1 Cytosol 1 0.500231643921095 1 0.999536712157809 hm5C_site_23156 DeepMRMD:1;iRNA_m5C:0.999536712157809 23157 chr1 230379135 230379135 1 + G C ESCA 230379152 + 230379132 230379172 41 AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA AATCAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA < 41bp 1 0.0769070817871455 1 0.109193712472916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230379152 chr1:230379135 nonsynonymous SNV 0.996 1 4 hm5C_associated_SNPs_22215 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23157 DeepMRMD:1;iRNA_m5C:0.999536712157815 23158 chr12 31244709 31244709 1 + C A ESCA 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGAAT < 41bp 1 0.192997781270083 1 0.083298921585083 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244709 synonymous SNV . 0 39 hm5C_associated_SNPs_22216 0 0 1 0 2 Cytosol 1 0.500231643923079 1 0.999536712153842 hm5C_site_23158 DeepMRMD:1;iRNA_m5C:0.999536712153842 23159 chr3 188242454 188242454 1 + G T ESCA 188242472 + 188242452 188242492 41 GGGGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCA GGTGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCA < 41bp 1 0.200686123813346 1 0.0292876064777374 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPP ENSG00000145012 CDS Human protein_coding chr3:188242472 chr3:188242454 nonsynonymous SNV 0.798 0 3 hm5C_associated_SNPs_22217 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_23159 DeepMRMD:1;iRNA_m5C:0.999536712157817 23160 chr11 120776146 120776146 1 + G C ESCA 120776153 + 120776133 120776173 41 GGATGGCGTGTACGGCGTTCCCGAGGCCAACGGCACCTGGA GGATGGCGTGTACCGCGTTCCCGAGGCCAACGGCACCTGGA < 41bp 1 0.283519455406503 1 0.806814670562744 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120776153 chr11:120776146 nonsynonymous SNV 0.532 5 14 hm5C_associated_SNPs_22218 0 0 0 0 0 membrane 1 0.500231643921312 0.386370658874512 0.999536712157376 hm5C_site_23160 DeepMRMD:0.386370658874512;iRNA_m5C:0.999536712157376 23161 chr16 55523591 55523591 1 + A T ESCA 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC ATGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC < 41bp 1 0.0459297777759881 1 0.514484405517578 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523591 nonsynonymous SNV 0.996 1 2 hm5C_associated_SNPs_22219 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921265 0.971031188964844 0.99953671215747 hm5C_site_23161 DeepMRMD:0.971031188964844;iRNA_m5C:0.99953671215747 23162 chr11 119045959 119045959 1 + G C ESCA 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTCTGCGGGCTCTCCCTCTGCTCTTCAACCTGATCA < 41bp 1 0.391542308176394 1 0.733453273773193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045959 synonymous SNV . 0 19 hm5C_associated_SNPs_22220 0 0 0 0 1 exosome 1 0.500231643867687 0.533093452453614 0.999536712264627 hm5C_site_23162 DeepMRMD:0.533093452453614;iRNA_m5C:0.999536712264627 23163 chr22 31592935 31592935 1 + C G ESCA 31592933 + 31592913 31592953 41 CTGTTTCAGAGAGAAGACCCCTCCTCGTCCTCAAGGACAGA CTGTTTCAGAGAGAAGACCCCTGCTCGTCCTCAAGGACAGA < 41bp 1 0.14560189424962 1 0.0799185931682587 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF185 ENSG00000138942 CDS Human protein_coding chr22:31592933 chr22:31592935 nonsynonymous SNV 0.976 5 23 hm5C_associated_SNPs_22222 0 0 1 0 2 Ribosome 1 0.500231654040397 1 0.999536691919206 hm5C_site_23163 DeepMRMD:1;iRNA_m5C:0.999536691919206 23164 chr8 146032926 146032926 1 + G C ESCA 146032912 + 146032892 146032932 41 CATCCACACCGGCGCCAAGCCCTTCCAGTGCACAGAGTGCG CATCCACACCGGCGCCAAGCCCTTCCAGTGCACACAGTGCG < 41bp 1 0.010866423287901 1 0.061014860868454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146032912 chr8:146032926 nonsynonymous SNV 0.974 0 35 hm5C_associated_SNPs_22223 0 0 0 0 0 chromatin 1 0.50027098795859 1 0.999458024082819 hm5C_site_23164 DeepMRMD:1;iRNA_m5C:0.999458024082819 23165 chr11 61491028 61491028 1 + C T ESCA 61491024 + 61491004 61491044 41 ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCG ACCAAGAGGAGGCAGCGTAACCTGTGGACCTACAACCTGCG < 41bp 1 0.137297101627835 1 0.0983123481273651 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491024 chr11:61491028 nonsynonymous SNV 0.988 3 25 hm5C_associated_SNPs_22224 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921082 1 0.999536712157836 hm5C_site_23165 DeepMRMD:1;iRNA_m5C:0.999536712157836 23166 chr1 214794199 214794199 1 + T G ESCA 214794185 + 214794165 214794205 41 TGGGGAACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAA TGGGGAACAAGAGGTGACTCCAAGTCGATCAACTGTGCAAA < 41bp 1 0.307751373033303 1 0.269824922084808 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794185 chr1:214794199 nonsynonymous SNV 0.050 0 35 hm5C_associated_SNPs_22225 0 0 1 0 1 Nucleus 1 0.500232785739353 1 0.999534428521295 hm5C_site_23166 DeepMRMD:1;iRNA_m5C:0.999534428521295 23167 chr1 214794199 214794199 1 + T G ESCA 214794190 + 214794170 214794210 41 AACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAATAGGG AACAAGAGGTGACTCCAAGTCGATCAACTGTGCAAATAGGG < 41bp 1 0.0917175114371709 1 0.331129282712936 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794190 chr1:214794199 nonsynonymous SNV 0.050 0 30 hm5C_associated_SNPs_22226 0 0 1 0 1 Nucleus 1 0.500231644010346 1 0.999536711979308 hm5C_site_23167 DeepMRMD:1;iRNA_m5C:0.999536711979308 23168 chr17 36920394 36920394 1 + A T ESCA 36920409 + 36920389 36920429 41 CCACCAGGACACTGAAGGCCCGAATGGACTAACCCTGTTCC CCACCTGGACACTGAAGGCCCGAATGGACTAACCCTGTTCC < 41bp 1 0.411668648169754 1 0.322823584079742 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMB3 ENSG00000108294 CDS Human other chr17:36920409 chr17:36920394 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_22228 0 0 1 0 1 Ribosome 1 0.50023164392108 1 0.999536712157839 hm5C_site_23168 DeepMRMD:1;iRNA_m5C:0.999536712157839 23169 chr17 61497497 61497497 1 + C T ESCA 61497487 + 61497467 61497507 41 TGCAGCAGCCACAGCAGCCACCGCCGCCACCGCAGCCTCAG TGCAGCAGCCACAGCAGCCACCGCCGCCACTGCAGCCTCAG < 41bp 1 0.0925840405084095 1 0.348753601312637 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61497487 chr17:61497497 nonsynonymous SNV 0.087 1 31 hm5C_associated_SNPs_22229 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_23169 DeepMRMD:1;iRNA_m5C:0.999536712157816 23170 chr5 167826550 167826550 1 + C A ESCA 167826565 + 167826545 167826585 41 AAGAGCGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT AAGAGAGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT < 41bp 1 0.689706833514335 1 0.243661314249039 experiment 0.62058633297133 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167826565 chr5:167826550 nonsynonymous SNV 0.998 1 6 hm5C_associated_SNPs_22230 0 0 1 0 2 Ribosome 1 0.500231643921128 1 0.999536712157744 hm5C_site_23170 DeepMRMD:1;iRNA_m5C:0.999536712157744 23171 chr7 100731162 100731162 1 + G C ESCA 100731170 + 100731150 100731190 41 AGTTGCTGTGCAGAGAGTGCCGCCTAGACCCCCACCTGGAC AGTTGCTGTGCACAGAGTGCCGCCTAGACCCCCACCTGGAC < 41bp 1 0.439951647096409 1 0.251378029584885 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100731170 chr7:100731162 nonsynonymous SNV 0.872 0 13 hm5C_associated_SNPs_22231 0 0 1 0 0 nucleus 1 0.5002320283098 1 0.9995359433804 hm5C_site_23171 DeepMRMD:1;iRNA_m5C:0.9995359433804 23172 chr10 81841630 81841630 1 + C G ESCA 81841623 + 81841603 81841643 41 GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCC GTCTTCTGGCCTCAGAGTATCCCTTATGAGAACCTTGGGCC < 41bp 1 0.332282959665424 1 0.0382408201694489 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM254 ENSG00000133678 CDS Human protein_coding chr10:81841623 chr10:81841630 nonsynonymous SNV 0.995 0 28 hm5C_associated_SNPs_22232 0 0 1 0 2 Endoplasmic reticulum 1 0.500231616630339 1 0.999536766739322 hm5C_site_23172 DeepMRMD:1;iRNA_m5C:0.999536766739322 23173 chr5 173378899 173378899 1 + A G ESCA 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCACGAGAAACTATATTTGTT < 41bp 1 0.161350339631109 1 0.18205800652504 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378899 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_22233 0 0 0 0 2 Ribosome 1 0.500242159143615 1 0.99951568171277 hm5C_site_23173 DeepMRMD:1;iRNA_m5C:0.99951568171277 23174 chr2 74154136 74154136 1 + C T ESCA 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCATGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA < 41bp 1 0.696025515297146 1 0.260513305664062 experiment 0.607948969405709 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154136 synonymous SNV . 0 8 hm5C_associated_SNPs_22234 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23174 DeepMRMD:1;iRNA_m5C:0.999536712157815 23175 chr20 49195805 49195805 1 + G T ESCA 49195806 + 49195786 49195826 41 CAGACAGCCGACCAGCTGCGCTTCTCCTACCTGGCTGTGAT CAGACAGCCGACCAGCTGCTCTTCTCCTACCTGGCTGTGAT < 41bp 1 0.132615021486289 1 0.0461380779743195 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49195806 chr20:49195805 nonsynonymous SNV 0.998 5 20 hm5C_associated_SNPs_22237 0 0 1 0 1 Ribosome 1 0.500242099338958 1 0.999515801322083 hm5C_site_23175 DeepMRMD:1;iRNA_m5C:0.999515801322083 23176 chr22 47072525 47072525 1 + C G ESCA 47072518 + 47072498 47072538 41 ACAAGGTCCTGTCTGTCCTCCCAGGCTCAGGCATGGGGATT ACAAGGTCCTGTCTGTCCTCCCAGGCTGAGGCATGGGGATT < 41bp 1 0.184215054559136 1 0.415474027395248 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47072518 chr22:47072525 stopgain 0.993 0 28 hm5C_associated_SNPs_22238 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23176 DeepMRMD:1;iRNA_m5C:0.999536712157815 23177 chr12 131488770 131488770 1 + C T ESCA 131488788 + 131488768 131488808 41 TTCCTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA TTTCTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA < 41bp 1 0.253299661630018 1 0.507368445396423 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488788 chr12:131488770 nonsynonymous SNV 0.001 0 3 hm5C_associated_SNPs_22239 0 0 1 0 1 chromatin 1 0.500231643921092 0.985263109207154 0.999536712157815 hm5C_site_23177 DeepMRMD:0.985263109207154;iRNA_m5C:0.999536712157815 23178 chr11 65396307 65396307 1 + G C ESCA 65396293 + 65396273 65396313 41 CCTTGACTGTGGCTCAGACTCGGCCATGCTGTTCGTCCAGG CCTTGACTGTGGCTCAGACTCGGCCATGCTGTTCCTCCAGG < 41bp 1 0.614576995930354 1 0.671729505062103 experiment 0.770846008139292 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396293 chr11:65396307 nonsynonymous SNV 0.896 0 35 hm5C_associated_SNPs_22240 0 0 1 0 1 Ribosome 1 0.500231643921109 0.656540989875794 0.999536712157782 hm5C_site_23178 DeepMRMD:0.656540989875794;iRNA_m5C:0.999536712157782 23179 chr12 109547654 109547654 1 + G A ESCA 109547637 + 109547617 109547657 41 TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTACAGACG TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTACAAACG < 41bp 1 0.56227013972678 1 0.326792150735855 experiment 0.875459720546441 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547637 chr12:109547654 synonymous SNV . 0 38 hm5C_associated_SNPs_22241 0 0 1 0 1 Ribosome 1 0.500231643921123 1 0.999536712157754 hm5C_site_23179 DeepMRMD:1;iRNA_m5C:0.999536712157754 23180 chr12 109547654 109547654 1 + G A ESCA 109547670 + 109547650 109547690 41 TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG TACAAACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG < 41bp 1 0.0403853448991574 1 0.0626024603843689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547670 chr12:109547654 synonymous SNV . 0 5 hm5C_associated_SNPs_22242 0 0 1 0 1 Ribosome 1 0.50023173075801 1 0.99953653848398 hm5C_site_23180 DeepMRMD:1;iRNA_m5C:0.99953653848398 23181 chr5 140481751 140481751 1 + C G ESCA 140481767 + 140481747 140481787 41 CCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCG CCATGAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCG < 41bp 1 0.680958878977565 1 0.192712396383286 experiment 0.638082242044871 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140481767 chr5:140481751 nonsynonymous SNV 0.055 3 5 hm5C_associated_SNPs_22243 0 0 0 0 0 exosome 1 0.500231643810947 1 0.999536712378105 hm5C_site_23181 DeepMRMD:1;iRNA_m5C:0.999536712378105 23182 chr9 135933335 135933335 1 + G A ESCA 135933325 + 135933305 135933345 41 GACTTCAAGCCATCCGACGGCAGTGAAAACGAAATGGAGAC GACTTCAAGCCATCCGACGGCAGTGAAAACAAAATGGAGAC < 41bp 1 0.394413984263412 1 0.476774007081985 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135933325 chr9:135933335 nonsynonymous SNV 0.969 4 31 hm5C_associated_SNPs_22244 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_23182 DeepMRMD:1;iRNA_m5C:0.999536712157815 23183 chr3 111705797 111705797 1 + C T ESCA 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGTTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT < 41bp 1 0.541116306921714 1 0.172331631183624 experiment 0.917767386156573 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705797 nonsynonymous SNV 0.997 0 3 hm5C_associated_SNPs_22245 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_23183 DeepMRMD:1;iRNA_m5C:0.999536712157814 23184 chr20 48568670 48568670 1 + G A ESCA 48568680 + 48568660 48568700 41 CTCCATCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCT CTCCATCATCAACCAGTGAGCAGAGTCCGTGCTTGCTATCT < 41bp 1 0.63769188045972 1 0.558053612709045 experiment 0.724616239080561 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF114 ENSG00000124226 CDS Human protein_coding chr20:48568680 chr20:48568670 nonsynonymous SNV 0.475 5 11 hm5C_associated_SNPs_22246 0 0 1 1 1 Ribosome 1 0.500231643913811 0.88389277458191 0.999536712172377 hm5C_site_23184 DeepMRMD:0.88389277458191;iRNA_m5C:0.999536712172377 23185 chr10 103826768 103826768 1 + C A ESCA 103826778 + 103826758 103826798 41 TTTCCAAGCCCTTCCTACAGCAGCCTGGGGTGCCACCCTCA TTTCCAAGCCATTCCTACAGCAGCCTGGGGTGCCACCCTCA < 41bp 1 0.432438856029263 1 0.0674305856227875 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HPS6 ENSG00000166189 CDS Human protein_coding chr10:103826778 chr10:103826768 nonsynonymous SNV 0.149 1 11 hm5C_associated_SNPs_22247 0 0 1 0 0 Ribosome 1 0.500231642923054 1 0.999536714153893 hm5C_site_23185 DeepMRMD:1;iRNA_m5C:0.999536714153893 23186 chr1 155032745 155032745 1 + T C ESCA 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGCTCGGTGCCAGCTACTGGTACCGTGCCCG < 41bp 1 0.576613660839941 1 0.621900320053101 experiment 0.846772678320117 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032745 synonymous SNV . 0 15 hm5C_associated_SNPs_22248 0 0 1 0 2 Ribosome 1 0.500232403809194 0.756199359893798 0.999535192381612 hm5C_site_23186 DeepMRMD:0.756199359893798;iRNA_m5C:0.999535192381612 23187 chr20 31021423 31021423 1 + C T ESCA 31021436 + 31021416 31021456 41 CAGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCT CAGCACCTGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCT < 41bp 1 0.589061275385292 1 0.213987827301025 experiment 0.821877449229416 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021436 chr20:31021423 synonymous SNV . 0 8 hm5C_associated_SNPs_22249 0 0 1 0 0 Nucleus 1 0.500231643915563 1 0.999536712168874 hm5C_site_23187 DeepMRMD:1;iRNA_m5C:0.999536712168874 23188 chr20 31021423 31021423 1 + C T ESCA 31021437 + 31021417 31021457 41 AGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCTG AGCACCTGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCTG < 41bp 1 0.511709333909223 1 0.298884570598602 experiment 0.976581332181553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021437 chr20:31021423 synonymous SNV . 0 7 hm5C_associated_SNPs_22250 0 0 1 0 0 Nucleus 1 0.500231643920898 1 0.999536712158203 hm5C_site_23188 DeepMRMD:1;iRNA_m5C:0.999536712158203 23189 chr11 124502084 124502084 1 + C T ESCA 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGTAGCACTTGAAGTCTCCATCACAGGG < 41bp 1 0.61557069857651 1 0.126835942268372 experiment 0.768858602846979 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502084 stopgain 0.970 1 16 hm5C_associated_SNPs_22251 0 0 1 12 1 Ribosome 1 0.500234457624384 1 0.999531084751232 hm5C_site_23189 DeepMRMD:1;iRNA_m5C:0.999531084751232 23190 chr8 56864612 56864612 1 + G A ESCA 56864624 + 56864604 56864644 41 TAATGGGGGCTATTACATCTCTCCACGAATCACTTTTCCCT TAATGGGGACTATTACATCTCTCCACGAATCACTTTTCCCT < 41bp 1 0.670144617929983 1 0.884369552135468 experiment 0.659710764140034 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56864624 chr8:56864612 nonsynonymous SNV 0.987 5 9 hm5C_associated_SNPs_22252 0 0 1 0 2 Cytosol 1 0.500231643921012 0.231260895729064 0.999536712157976 hm5C_site_23190 DeepMRMD:0.231260895729064;iRNA_m5C:0.999536712157976 23191 chr21 38117396 38117396 1 + C A ESCA 38117415 + 38117395 38117435 41 CCGGCGAACACTGCTAGGCACAGCCTGGTGCCAAGCTACGA CAGGCGAACACTGCTAGGCACAGCCTGGTGCCAAGCTACGA < 41bp 1 0.22860253695606 1 0.136603862047195 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIM2 ENSG00000159263 CDS Human protein_coding chr21:38117415 chr21:38117396 nonsynonymous SNV 0.029 3 2 hm5C_associated_SNPs_22253 0 0 1 0 1 nucleus 1 0.500231643923335 1 0.99953671215333 hm5C_site_23191 DeepMRMD:1;iRNA_m5C:0.99953671215333 23192 chr6 35438036 35438036 1 + G A ESCA 35438048 + 35438028 35438068 41 TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAAC TAAATAAGACAGGAAAGTTCCCTTCCCTGCTCACACACAAC < 41bp 1 0.0203224405684487 1 0.1176997423172 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438048 chr6:35438036 nonsynonymous SNV 0.992 2 9 hm5C_associated_SNPs_22254 0 0 1 0 2 Cytosol 1 0.500231798337064 1 0.999536403325873 hm5C_site_23192 DeepMRMD:1;iRNA_m5C:0.999536403325873 23193 chr19 36229256 36229256 1 + G A ESCA 36229257 + 36229237 36229277 41 ATGCATGGCAATGCCGCCCGCTTCATCAACCACTCCTGTGA ATGCATGGCAATGCCGCCCACTTCATCAACCACTCCTGTGA < 41bp 1 0.211272608364465 1 0.629633903503418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36229257 chr19:36229256 nonsynonymous SNV 0.996 5 20 hm5C_associated_SNPs_22255 0 0 1 0 1 chromatin 1 0.500275307567487 0.740732192993164 0.999449384865027 hm5C_site_23193 DeepMRMD:0.740732192993164;iRNA_m5C:0.999449384865027 23194 chr1 150483621 150483621 1 + C T ESCA 150483635 + 150483615 150483655 41 TATTCCCGCTGCTGCCACTGCCGCAGCCACACAAACCGCCT TATTCCTGCTGCTGCCACTGCCGCAGCCACACAAACCGCCT < 41bp 1 0.609705853642638 1 0.65549099445343 experiment 0.780588292714723 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ECM1 ENSG00000143369 CDS Human protein_coding chr1:150483635 chr1:150483621 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_22256 0 0 1 0 1 Endoplasmic reticulum 1 0.500150102364285 0.68901801109314 0.99969979527143 hm5C_site_23194 DeepMRMD:0.68901801109314;iRNA_m5C:0.99969979527143 23195 chr11 57428888 57428888 1 + C T ESCA 57428893 + 57428873 57428913 41 CTCATCATGGATATCCGGTTCATGGATCTGAAGTAGAGATC CTCATCATGGATATCTGGTTCATGGATCTGAAGTAGAGATC < 41bp 1 0.513579276322726 1 0.139786899089813 experiment 0.972841447354548 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLP1 ENSG00000172409 CDS Human protein_coding chr11:57428893 chr11:57428888 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_22257 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_23195 DeepMRMD:1;iRNA_m5C:0.999536712157815 23196 chr16 1545436 1545436 1 + G A ESCA 1545447 + 1545427 1545467 41 CGCAGTGTCGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC CGCAGTGTCAGCAGCAGACGCAGCCCGGCTTCATCCTGCTC < 41bp 1 0.397530856451026 1 0.137066662311554 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545447 chr16:1545436 nonsynonymous SNV 0.016 1 10 hm5C_associated_SNPs_22258 0 0 0 0 1 Cytosol 1 0.500231644957261 1 0.999536710085478 hm5C_site_23196 DeepMRMD:1;iRNA_m5C:0.999536710085478 23197 chrX 48564745 48564745 1 + C T ESCA 48564763 + 48564743 48564783 41 GACGTGTACACCGTGGATGCCGCCTACTATGGCAACATCTC GATGTGTACACCGTGGATGCCGCCTACTATGGCAACATCTC < 41bp 1 0.30496785499508 1 0.40756493806839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564763 chrX:48564745 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_22259 0 0 1 0 1 Ribosome 1 0.500231643906254 1 0.999536712187492 hm5C_site_23197 DeepMRMD:1;iRNA_m5C:0.999536712187492 23198 chr18 60645905 60645905 1 + C T ESCA 60645885 + 60645865 60645905 41 TGAACATGGTGATCAAGGATCGGCCCTCAGATGGGCTGGGC TGAACATGGTGATCAAGGATCGGCCCTCAGATGGGCTGGGT < 41bp 1 0.218996598014387 1 0.211518287658691 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60645885 chr18:60645905 synonymous SNV . 0 41 hm5C_associated_SNPs_22260 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_23198 DeepMRMD:1;iRNA_m5C:0.999536712157815 23199 chr8 145166383 145166383 1 + G A ESCA 145166367 + 145166347 145166387 41 CCATCGTCGGAGGGCAACATCTCAGCACCTGGTGCCGAAGG CCATCGTCGGAGGGCAACATCTCAGCACCTGGTGCCAAAGG < 41bp 1 0.43879615897149 1 0.211789488792419 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166367 chr8:145166383 synonymous SNV . 0 37 hm5C_associated_SNPs_22261 0 0 1 0 0 chromatin 1 0.500231643921097 1 0.999536712157806 hm5C_site_23199 DeepMRMD:1;iRNA_m5C:0.999536712157806 23200 chr8 145166383 145166383 1 + G A ESCA 145166369 + 145166349 145166389 41 ATCGTCGGAGGGCAACATCTCAGCACCTGGTGCCGAAGGAG ATCGTCGGAGGGCAACATCTCAGCACCTGGTGCCAAAGGAG < 41bp 1 0.62304240811526 1 0.698193490505219 experiment 0.75391518376948 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166369 chr8:145166383 synonymous SNV . 0 35 hm5C_associated_SNPs_22262 0 0 1 0 0 chromatin 1 0.500231638915145 0.603613018989562 0.999536722169711 hm5C_site_23200 DeepMRMD:0.603613018989562;iRNA_m5C:0.999536722169711 23201 chr8 145166383 145166383 1 + G A ESCA 145166382 + 145166362 145166402 41 AACATCTCAGCACCTGGTGCCGAAGGAGGTGGGGTGGGTCC AACATCTCAGCACCTGGTGCCAAAGGAGGTGGGGTGGGTCC < 41bp 1 0.25180444773896 1 0.840234518051147 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166382 chr8:145166383 synonymous SNV . 0 22 hm5C_associated_SNPs_22263 0 0 1 0 0 chromatin 1 0.500231643921354 0.319530963897706 0.999536712157291 hm5C_site_23201 DeepMRMD:0.319530963897706;iRNA_m5C:0.999536712157291 23202 chr1 112999451 112999451 1 + G A ESCA 112999436 + 112999416 112999456 41 TAAGCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACC TAAGCGTTTATTGGGGTCATCAGCTAGCAGCCCTGACTACC < 41bp 1 0.463433772060492 1 0.386497378349304 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999436 chr1:112999451 nonsynonymous SNV 0.965 0 36 hm5C_associated_SNPs_22264 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23202 DeepMRMD:1;iRNA_m5C:0.999536712157815 23203 chr1 112999451 112999451 1 + G A ESCA 112999439 + 112999419 112999459 41 GCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGT GCGTTTATTGGGGTCATCAGCTAGCAGCCCTGACTACCAGT < 41bp 1 0.53476442374729 1 0.501129329204559 experiment 0.930471152505421 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999439 chr1:112999451 nonsynonymous SNV 0.965 0 33 hm5C_associated_SNPs_22265 0 0 0 0 0 Ribosome 1 0.500227495437971 0.997741341590882 0.999545009124059 hm5C_site_23203 DeepMRMD:0.997741341590882;iRNA_m5C:0.999545009124059 23204 chr1 112999451 112999451 1 + G A ESCA 112999446 + 112999426 112999466 41 TTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTA TTGGGGTCATCAGCTAGCAGCCCTGACTACCAGTCATCGTA < 41bp 1 0.110509596302503 1 0.0609162449836731 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999446 chr1:112999451 nonsynonymous SNV 0.965 0 26 hm5C_associated_SNPs_22266 0 0 0 0 0 Ribosome 1 0.500231643921035 1 0.999536712157929 hm5C_site_23204 DeepMRMD:1;iRNA_m5C:0.999536712157929 23205 chr1 112999451 112999451 1 + G A ESCA 112999447 + 112999427 112999467 41 TGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTAC TGGGGTCATCAGCTAGCAGCCCTGACTACCAGTCATCGTAC < 41bp 1 0.471898938794308 1 0.104230880737305 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999447 chr1:112999451 nonsynonymous SNV 0.965 0 25 hm5C_associated_SNPs_22267 0 0 0 0 0 Ribosome 1 0.500466302741651 1 0.999067394516698 hm5C_site_23205 DeepMRMD:1;iRNA_m5C:0.999067394516698 23206 chr1 112999451 112999451 1 + G A ESCA 112999452 + 112999432 112999472 41 TCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGT TCATCAGCTAGCAGCCCTGACTACCAGTCATCGTACCAAGT < 41bp 1 0.170325653140118 1 0.0162413418292999 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999452 chr1:112999451 nonsynonymous SNV 0.965 0 20 hm5C_associated_SNPs_22268 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23206 DeepMRMD:1;iRNA_m5C:0.999536712157815 23207 chr1 112999451 112999451 1 + G A ESCA 112999455 + 112999435 112999475 41 TCAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGG TCAGCTAGCAGCCCTGACTACCAGTCATCGTACCAAGTAGG < 41bp 1 0.160735522479125 1 0.210910201072693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999455 chr1:112999451 nonsynonymous SNV 0.965 0 17 hm5C_associated_SNPs_22269 0 0 0 0 0 Ribosome 1 0.500231643921098 1 0.999536712157803 hm5C_site_23207 DeepMRMD:1;iRNA_m5C:0.999536712157803 23208 chr1 112999451 112999451 1 + G A ESCA 112999456 + 112999436 112999476 41 CAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGG CAGCTAGCAGCCCTGACTACCAGTCATCGTACCAAGTAGGG < 41bp 1 0.148922452204572 1 0.608545660972595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999456 chr1:112999451 nonsynonymous SNV 0.965 0 16 hm5C_associated_SNPs_22270 0 0 0 0 0 Ribosome 1 0.500231643921092 0.78290867805481 0.999536712157815 hm5C_site_23208 DeepMRMD:0.78290867805481;iRNA_m5C:0.999536712157815 23209 chr1 112999451 112999451 1 + G A ESCA 112999460 + 112999440 112999480 41 TAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGGATCA TAGCAGCCCTGACTACCAGTCATCGTACCAAGTAGGGATCA < 41bp 1 0.348342450461981 1 0.0440489649772644 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999460 chr1:112999451 nonsynonymous SNV 0.965 0 12 hm5C_associated_SNPs_22271 0 0 0 0 0 Ribosome 1 0.500231643915796 1 0.999536712168407 hm5C_site_23209 DeepMRMD:1;iRNA_m5C:0.999536712168407 23210 chr1 112999451 112999451 1 + G A ESCA 112999467 + 112999447 112999487 41 CCTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACG CCTGACTACCAGTCATCGTACCAAGTAGGGATCAACCAACG < 41bp 1 0.261954816227468 1 0.542689025402069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999467 chr1:112999451 nonsynonymous SNV 0.965 0 5 hm5C_associated_SNPs_22272 0 0 0 0 0 Ribosome 1 0.500231643921092 0.914621949195862 0.999536712157815 hm5C_site_23210 DeepMRMD:0.914621949195862;iRNA_m5C:0.999536712157815 23211 chr1 112999451 112999451 1 + G A ESCA 112999468 + 112999448 112999488 41 CTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACGG CTGACTACCAGTCATCGTACCAAGTAGGGATCAACCAACGG < 41bp 1 0.391619697244778 1 0.143935799598694 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999468 chr1:112999451 nonsynonymous SNV 0.965 0 4 hm5C_associated_SNPs_22273 0 0 0 0 0 Ribosome 1 0.500231643921097 1 0.999536712157807 hm5C_site_23211 DeepMRMD:1;iRNA_m5C:0.999536712157807 23212 chr5 179147423 179147423 1 + A G ESCA 179147414 + 179147394 179147434 41 TACCTCCGTAGGGATGAAGACATGGATGGAGAATGGGAGGC TACCTCCGTAGGGATGAAGACATGGATGGGGAATGGGAGGC < 41bp 1 0.593221857738931 1 0.492015987634659 experiment 0.813556284522138 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179147414 chr5:179147423 synonymous SNV . 0 30 hm5C_associated_SNPs_22274 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23212 DeepMRMD:1;iRNA_m5C:0.999536712157815 23213 chr6 3225656 3225656 1 + C T ESCA 3225650 - 3225630 3225670 41 CCACCCCCACCTACGGGGACCTCAACCACCTGGTGTCGGCC CCACCCCCACCTACAGGGACCTCAACCACCTGGTGTCGGCC < 41bp 1 0.409159457488379 1 0.143519550561905 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TUBB2B ENSG00000137285 CDS Human protein_coding chr6:3225650 chr6:3225656 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_22275 0 0 0 0 0 exosome 1 0.500231643791853 1 0.999536712416295 hm5C_site_23213 DeepMRMD:1;iRNA_m5C:0.999536712416295 23214 chr15 81221497 81221497 1 + G T ESCA 81221501 + 81221481 81221521 41 TTGGACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGT TTGGACCATAGCGGAATGACCCTCCCTATAGGCCAGTAGGT < 41bp 1 0.0208800044730045 1 0.0357131063938141 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221501 chr15:81221497 nonsynonymous SNV 0.956 4 17 hm5C_associated_SNPs_22276 0 0 1 0 1 Nucleus 1 0.500231643921086 1 0.999536712157828 hm5C_site_23214 DeepMRMD:1;iRNA_m5C:0.999536712157828 23215 chr15 81221497 81221497 1 + G T ESCA 81221505 + 81221485 81221525 41 ACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGTTTGC ACCATAGCGGAATGACCCTCCCTATAGGCCAGTAGGTTTGC < 41bp 1 0.0229154405166437 1 0.366643965244293 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221505 chr15:81221497 nonsynonymous SNV 0.956 4 13 hm5C_associated_SNPs_22277 0 0 1 0 1 Nucleus 1 0.500231761731569 1 0.999536476536863 hm5C_site_23215 DeepMRMD:1;iRNA_m5C:0.999536476536863 23216 chr22 40661412 40661412 1 + G A ESCA 40661395 + 40661375 40661415 41 TTGAACTTAAGTTCACCAAACCCCATGGAGAATAAGGGAAT TTGAACTTAAGTTCACCAAACCCCATGGAGAATAAGGAAAT < 41bp 1 0.139406533034156 1 0.090355396270752 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40661395 chr22:40661412 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_22278 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_23216 DeepMRMD:1;iRNA_m5C:0.999536712157812 23217 chr7 2472427 2472427 1 + G T ESCA 2472416 + 2472396 2472436 41 CTAGGCCGCACACGGGGCCGCCGCTGCCCACGCCCGGGCCG CTAGGCCGCACACGGGGCCGCCGCTGCCCACTCCCGGGCCG < 41bp 1 0.521433130520896 1 0.107947736978531 experiment 0.957133738958208 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472416 chr7:2472427 synonymous SNV . 0 32 hm5C_associated_SNPs_22279 0 0 1 0 0 nucleolus 1 0.500231643921093 1 0.999536712157814 hm5C_site_23217 DeepMRMD:1;iRNA_m5C:0.999536712157814 23218 chr7 2472427 2472427 1 + G T ESCA 2472435 + 2472415 2472455 41 GCCGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCA GCCGCTGCCCACTCCCGGGCCGGACAGGGACAGGGAGCTCA < 41bp 1 0.374545074144506 1 0.224633902311325 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472435 chr7:2472427 synonymous SNV . 0 13 hm5C_associated_SNPs_22280 0 0 1 0 0 nucleolus 1 0.500231643921075 1 0.99953671215785 hm5C_site_23218 DeepMRMD:1;iRNA_m5C:0.99953671215785 23219 chrX 153677073 153677073 1 + G C ESCA 153677085 + 153677065 153677105 41 CTGCGGCAGGAGTGGGAAGCCAAGCAGGAGAAGATCAAGAG CTGCGGCACGAGTGGGAAGCCAAGCAGGAGAAGATCAAGAG < 41bp 1 0.624446682325769 1 0.620571196079254 experiment 0.751106635348462 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout FAM50A ENSG00000071859 CDS Human protein_coding chrX:153677085 chrX:153677073 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_22281 0 0 1 0 1 Ribosome 1 0.500231643721726 0.758857607841492 0.999536712556548 hm5C_site_23219 DeepMRMD:0.758857607841492;iRNA_m5C:0.999536712556548 23220 chr9 137708901 137708901 1 + T G ESCA 137708906 + 137708886 137708926 41 TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG TACTGGTGAACCAGGGCCATCGGGGCCTCCAGGAAAAAGGG < 41bp 1 0.339996680614098 1 0.854381799697876 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137708906 chr9:137708901 synonymous SNV . 0 16 hm5C_associated_SNPs_22282 0 0 0 0 1 Nucleus 1 0.500231643921092 0.291236400604248 0.999536712157815 hm5C_site_23220 DeepMRMD:0.291236400604248;iRNA_m5C:0.999536712157815 23221 chr2 30756135 30756135 1 + G C ESCA 30756147 + 30756127 30756167 41 TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTCTCAAAGGT TCAGATTGCAGAAAATTTGCCTCAAAGCGAGTCTCAAAGGT < 41bp 1 0.641279070356255 1 0.589769780635834 experiment 0.71744185928749 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30756147 chr2:30756135 nonsynonymous SNV 0.897 1 9 hm5C_associated_SNPs_22283 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644573202 0.820460438728332 0.999536710853597 hm5C_site_23221 DeepMRMD:0.820460438728332;iRNA_m5C:0.999536710853597 23222 chr20 44469672 44469672 1 + G A ESCA 44469656 + 44469636 44469676 41 TGCAAGCCCAGCTGGGCACCCCCTCTGGCCCAGACCGCCCC TGCAAGCCCAGCTGGGCACCCCCTCTGGCCCAGACCACCCC < 41bp 1 0.176481309359578 1 0.132034778594971 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX21 ENSG00000124104 CDS Human protein_coding chr20:44469656 chr20:44469672 nonsynonymous SNV 0.996 0 37 hm5C_associated_SNPs_22284 0 0 0 0 0 Ribosome 1 0.500231643926696 1 0.999536712146609 hm5C_site_23222 DeepMRMD:1;iRNA_m5C:0.999536712146609 23223 chr20 44469672 44469672 1 + G A ESCA 44469670 + 44469650 44469690 41 GGCACCCCCTCTGGCCCAGACCGCCCCCTGCTGACCCTGGC GGCACCCCCTCTGGCCCAGACCACCCCCTGCTGACCCTGGC < 41bp 1 0.131307268254698 1 0.132554352283478 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX21 ENSG00000124104 CDS Human protein_coding chr20:44469670 chr20:44469672 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_22285 0 0 0 0 0 Ribosome 1 0.500231643921087 1 0.999536712157825 hm5C_site_23223 DeepMRMD:1;iRNA_m5C:0.999536712157825 23224 chr22 32889259 32889259 1 + G A ESCA 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAGGTTTTTATATCTGCGTAATTTTCGAGGTGAT < 41bp 1 0.587747585050685 1 0.338546276092529 experiment 0.824504829898629 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889259 nonsynonymous SNV 0.994 4 27 hm5C_associated_SNPs_22286 0 0 1 0 1 chromatin 1 0.50023164392107 1 0.99953671215786 hm5C_site_23224 DeepMRMD:1;iRNA_m5C:0.99953671215786 23225 chr12 73012754 73012754 1 + C T ESCA 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGTCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC < 41bp 1 0.104747645251248 1 0.281250774860382 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012754 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_22288 0 0 0 0 2 exosome 1 0.500231643925837 1 0.999536712148327 hm5C_site_23225 DeepMRMD:1;iRNA_m5C:0.999536712148327 23226 chr5 169015490 169015490 1 + G A ESCA 169015481 + 169015461 169015501 41 AAGAGGCTGAAGAAGAGCGACTAAAAGCTGCACAGTATGGT AAGAGGCTGAAGAAGAGCGACTAAAAGCTACACAGTATGGT < 41bp 1 0.429038262409548 1 0.296162486076355 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015481 chr5:169015490 nonsynonymous SNV 0.891 4 30 hm5C_associated_SNPs_22289 0 0 1 0 3 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_23226 DeepMRMD:1;iRNA_m5C:0.999536712157815 23227 chr2 55191165 55191165 1 + C T ESCA 55191153 + 55191133 55191173 41 CAAGGTGAGCTTGGGCCATGCGGCCAGGTGTGCAGCCTACA CAAGGTGAGCTTGGGCCATGCGGCCAGGTGTGTAGCCTACA < 41bp 1 0.23195405758879 1 0.417245507240295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55191153 chr2:55191165 nonsynonymous SNV 0.992 1 33 hm5C_associated_SNPs_22290 0 0 0 0 1 cytosol 1 0.500231643921091 1 0.999536712157819 hm5C_site_23227 DeepMRMD:1;iRNA_m5C:0.999536712157819 23228 chr17 16335477 16335477 1 + T G ESCA 16335468 + 16335448 16335488 41 GCGAGCTGGCCTTCCAGGAGCAGCTGCACTTCCGCGGCATG GCGAGCTGGCCTTCCAGGAGCAGCTGCACGTCCGCGGCATG < 41bp 1 0.463439236508983 1 0.398453444242477 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16335468 chr17:16335477 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_22291 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_23228 DeepMRMD:1;iRNA_m5C:0.999536712157815 23229 chr6 74502432 74502432 1 + T G ESCA 74502417 + 74502397 74502437 41 TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTTTGCT TGCCTTATGGCTGTGGTGAACAGAACATGATAAATGTTGCT < 41bp 1 0.405530259299075 1 0.521087050437927 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74502417 chr6:74502432 nonsynonymous SNV 0.776 4 36 hm5C_associated_SNPs_22292 0 0 0 0 2 Ribosome 1 0.500231580770574 0.957825899124146 0.999536838458852 hm5C_site_23229 DeepMRMD:0.957825899124146;iRNA_m5C:0.999536838458852 23230 chr19 24010155 24010155 1 + T A ESCA 24010154 + 24010134 24010174 41 GCTTCTGCTGGCAGCTCGTGCTATTGTTGCCATTGAAAACC GCTTCTGCTGGCAGCTCGTGCAATTGTTGCCATTGAAAACC < 41bp 1 0.237311834983595 1 0.184410452842712 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010154 chr19:24010155 synonymous SNV . 0 22 hm5C_associated_SNPs_22293 0 0 0 0 0 Cytosol 1 0.500231644931204 1 0.999536710137591 hm5C_site_23230 DeepMRMD:1;iRNA_m5C:0.999536710137591 23231 chr12 52695793 52695793 1 + C G ESCA 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA GCCCGGCCGCTGCTGCATCACCGCCGCCCCGTACCGTGGCA < 41bp 1 0.43121944451665 1 0.168270140886307 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695793 synonymous SNV . 0 31 hm5C_associated_SNPs_22294 0 0 0 0 1 nucleus 1 0.500231643921342 1 0.999536712157317 hm5C_site_23231 DeepMRMD:1;iRNA_m5C:0.999536712157317 23232 chr11 67787219 67787219 1 + G C ESCA 67787211 + 67787191 67787231 41 TTGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTG TTGCTGTGGTGCTGGGCGGGCCCCAGGACACGGGGCAGCTG < 41bp 1 0.40156865584882 1 0.308894157409668 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787211 chr11:67787219 nonsynonymous SNV 0.997 0 29 hm5C_associated_SNPs_22295 0 0 0 0 2 Ribosome 1 0.500231660056928 1 0.999536679886144 hm5C_site_23232 DeepMRMD:1;iRNA_m5C:0.999536679886144 23233 chr11 67787219 67787219 1 + G C ESCA 67787212 + 67787192 67787232 41 TGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTGC TGCTGTGGTGCTGGGCGGGCCCCAGGACACGGGGCAGCTGC < 41bp 1 0.22165035003508 1 0.482812225818634 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787212 chr11:67787219 nonsynonymous SNV 0.997 0 28 hm5C_associated_SNPs_22296 0 0 0 0 2 Ribosome 1 0.500231395036408 1 0.999537209927185 hm5C_site_23233 DeepMRMD:1;iRNA_m5C:0.999537209927185 23234 chr10 5955768 5955768 1 + A G ESCA 5955758 + 5955738 5955778 41 TATCTTCAGGAGAATTCCTGCACTCAGGCCACAAAAGTTAA TATCTTCAGGAGAATTCCTGCACTCAGGCCGCAAAAGTTAA < 41bp 1 0.0551108007095293 1 0.0674555897712708 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5955758 chr10:5955768 nonsynonymous SNV 0.640 0 31 hm5C_associated_SNPs_22297 0 0 1 0 1 Ribosome 1 0.500231670415634 1 0.999536659168732 hm5C_site_23234 DeepMRMD:1;iRNA_m5C:0.999536659168732 23235 chr3 127775657 127775657 1 + G T ESCA 127775667 + 127775647 127775687 41 CCAAAAGACCGAGCTCTCTTCAACGGAGCCCAAAAGTGTAA CCAAAAGACCTAGCTCTCTTCAACGGAGCCCAAAAGTGTAA < 41bp 1 0.489881276476571 1 0.26829269528389 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127775667 chr3:127775657 nonsynonymous SNV 0.995 2 11 hm5C_associated_SNPs_22298 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23235 DeepMRMD:1;iRNA_m5C:0.999536712157815 23236 chr17 900388 900388 1 + G A ESCA 900378 + 900358 900398 41 GAGGGTTGCTTGGGCAGCGACTGTCATGGCGGCGGCCGCCC GAGGGTTGCTTGGGCAGCGACTGTCATGGCAGCGGCCGCCC < 41bp 1 0.573024315825979 1 0.301787912845612 experiment 0.853951368348043 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TIMM22 ENSG00000177370 CDS Human protein_coding chr17:900378 chr17:900388 synonymous SNV . 0 31 hm5C_associated_SNPs_22300 0 0 1 0 0 Cytosol 1 0.5002316439203 1 0.9995367121594 hm5C_site_23236 DeepMRMD:1;iRNA_m5C:0.9995367121594 23237 chr1 109643003 109643003 1 + G C ESCA 109642983 + 109642963 109643003 41 CCCCTGCGCCCCTCCTCCCGCTTACACTTTGATCTTATTTG CCCCTGCGCCCCTCCTCCCGCTTACACTTTGATCTTATTTC < 41bp 1 0.0565278823628178 1 0.0972627997398376 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642983 chr1:109643003 . . 0 41 hm5C_associated_SNPs_22301 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23237 DeepMRMD:1;iRNA_m5C:0.999536712157815 23238 chr1 109643003 109643003 1 + G C ESCA 109642987 + 109642967 109643007 41 TGCGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCG TGCGCCCCTCCTCCCGCTTACACTTTGATCTTATTTCATCG < 41bp 1 0.192925589899402 1 0.0293286740779877 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642987 chr1:109643003 . . 0 37 hm5C_associated_SNPs_22302 0 0 1 1 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_23238 DeepMRMD:1;iRNA_m5C:0.999536712157814 23239 chr1 109643003 109643003 1 + G C ESCA 109642989 + 109642969 109643009 41 CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCGGA CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTCATCGGA < 41bp 1 0.263687517335586 1 0.0330907106399536 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642989 chr1:109643003 . . 0 35 hm5C_associated_SNPs_22303 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23239 DeepMRMD:1;iRNA_m5C:0.999536712157815 23240 chr1 109643003 109643003 1 + G C ESCA 109642996 + 109642976 109643016 41 CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTGAC CCTCCCGCTTACACTTTGATCTTATTTCATCGGATCGTGAC < 41bp 1 0.222882184756564 1 0.0148472785949707 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642996 chr1:109643003 . . 0 28 hm5C_associated_SNPs_22304 0 0 1 1 0 unknown 1 0.500231643809379 1 0.999536712381242 hm5C_site_23240 DeepMRMD:1;iRNA_m5C:0.999536712381242 23241 chr1 109643003 109643003 1 + G C ESCA 109643006 + 109642986 109643026 41 ACACTTTGATCTTATTTGATCGGATCGTGACCCCAGCCCCG ACACTTTGATCTTATTTCATCGGATCGTGACCCCAGCCCCG < 41bp 1 0.527722091844874 1 0.77061665058136 experiment 0.944555816310251 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643006 chr1:109643003 . . 0 18 hm5C_associated_SNPs_22305 0 0 1 1 0 unknown 1 0.500232572212068 0.45876669883728 0.999534855575864 hm5C_site_23241 DeepMRMD:0.45876669883728;iRNA_m5C:0.999534855575864 23242 chr1 109643003 109643003 1 + G C ESCA 109643011 + 109642991 109643031 41 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGG TTGATCTTATTTCATCGGATCGTGACCCCAGCCCCGCCGGG < 41bp 1 0.518625414318075 1 0.390009582042694 experiment 0.962749171363851 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643011 chr1:109643003 . . 0 13 hm5C_associated_SNPs_22306 0 0 1 1 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_23242 DeepMRMD:1;iRNA_m5C:0.999536712157815 23243 chr1 109643003 109643003 1 + G C ESCA 109643018 + 109642998 109643038 41 TATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC TATTTCATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC < 41bp 1 0.338923836018433 1 0.337153613567352 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643018 chr1:109643003 . . 0 6 hm5C_associated_SNPs_22307 0 0 1 1 0 unknown 1 0.500231643915906 1 0.999536712168187 hm5C_site_23243 DeepMRMD:1;iRNA_m5C:0.999536712168187 23244 chr1 109643003 109643003 1 + G C ESCA 109643019 + 109642999 109643039 41 ATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG ATTTCATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG < 41bp 1 0.581992388636385 1 0.339597940444946 experiment 0.83601522272723 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643019 chr1:109643003 . . 0 5 hm5C_associated_SNPs_22308 0 0 1 1 0 unknown 1 0.500230120387348 1 0.999539759225303 hm5C_site_23244 DeepMRMD:1;iRNA_m5C:0.999539759225303 23245 chr1 109643003 109643003 1 + G C ESCA 109643023 + 109643003 109643043 41 GATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT CATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT < 41bp 1 0.303028341433566 1 0.135653018951416 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643023 chr1:109643003 . . 0 1 hm5C_associated_SNPs_22309 0 0 1 1 0 unknown 1 0.500236437182315 1 0.999527125635369 hm5C_site_23245 DeepMRMD:1;iRNA_m5C:0.999527125635369 23246 chr3 132441186 132441186 1 + G C ESCA 132441200 - 132441180 132441220 41 GTAGTAGCGGCAACGGACGCCATGGGGACCGCCTCGTCGCT GTAGTAGCGGCAACGGACGCCATGGGGACCGCCTGGTCGCT < 41bp 1 0.64358921635747 1 0.558297336101532 experiment 0.71282156728506 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NPHP3 ENSG00000113971 CDS Human protein_coding chr3:132441200 chr3:132441186 nonsynonymous SNV 0.661 5 35 hm5C_associated_SNPs_22310 0 0 0 0 0 chromatin 1 0.500231643911989 0.883405327796936 0.999536712176021 hm5C_site_23246 DeepMRMD:0.883405327796936;iRNA_m5C:0.999536712176021 23247 chrX 53114916 53114916 1 + C G ESCA 53114930 + 53114910 53114950 41 ACAATTCATGACATCAAGATCTCTGACTTCATGGAGACCAC ACAATTGATGACATCAAGATCTCTGACTTCATGGAGACCAC < 41bp 1 0.446772069161873 1 0.314709007740021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53114930 chrX:53114916 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_22311 0 0 1 1 0 chromatin 1 0.500231638981942 1 0.999536722036116 hm5C_site_23247 DeepMRMD:1;iRNA_m5C:0.999536722036116 23248 chr20 57480483 57480483 1 + C T ESCA 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGTGTGCCTGCTACGAACGCTCCAACGA < 41bp 1 0.521042189273757 1 0.36413511633873 experiment 0.957915621452485 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480483 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_22312 0 0 1 2 2 Cytosol 1 0.500343323137286 1 0.999313353725428 hm5C_site_23248 DeepMRMD:1;iRNA_m5C:0.999313353725428 23249 chr9 135947058 135947058 1 + C A ESCA 135947046 + 135947026 135947066 41 CCCGTGCCGCCCACGGGTGACTCCGGGGCCCCCCCTGTGCC CCCGTGCCGCCCACGGGTGACTCCGGGGCCCCACCTGTGCC < 41bp 1 0.694102562606043 1 0.831680178642273 experiment 0.611794874787915 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947046 chr9:135947058 synonymous SNV . 0 33 hm5C_associated_SNPs_22313 0 0 1 0 0 exosome 1 0.500231643921092 0.336639642715454 0.999536712157816 hm5C_site_23249 DeepMRMD:0.336639642715454;iRNA_m5C:0.999536712157816 23250 chr9 137987773 137987773 1 + G A ESCA 137987790 + 137987770 137987810 41 TACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC TACATGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC < 41bp 1 0.259466135444897 1 0.357764422893524 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987790 chr9:137987773 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_22314 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23250 DeepMRMD:1;iRNA_m5C:0.999536712157815 23251 chr9 137987773 137987773 1 + G A ESCA 137987791 + 137987771 137987811 41 ACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC ACATGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC < 41bp 1 0.387612874809754 1 0.67207133769989 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987791 chr9:137987773 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_22315 0 0 0 0 2 Endoplasmic reticulum 1 0.500238939547647 0.65585732460022 0.999522120904706 hm5C_site_23251 DeepMRMD:0.65585732460022;iRNA_m5C:0.999522120904706 23252 chr7 74146952 74146952 1 + G T ESCA 74146969 + 74146949 74146989 41 CTCGCCTGGAGAGGATATTACTTGCAAAGGAAAGGATTCGT CTCTCCTGGAGAGGATATTACTTGCAAAGGAAAGGATTCGT < 41bp 1 0.208445483816026 1 0.0358745455741882 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2I ENSG00000077809 CDS Human other chr7:74146969 chr7:74146952 nonsynonymous SNV 0.982 3 4 hm5C_associated_SNPs_22316 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23252 DeepMRMD:1;iRNA_m5C:0.999536712157815 23253 chr19 58369950 58369950 1 + G A ESCA 58369959 + 58369939 58369979 41 TTCAGGTTGTTGGTGTGGATCAAAAGATGAGGAGGCACCTT TTCAGGTTGTTAGTGTGGATCAAAAGATGAGGAGGCACCTT < 41bp 1 0.622746110130724 1 0.758945941925049 experiment 0.754507779738552 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF587 ENSG00000198466;ENSG00000268750 CDS Human other chr19:58369959 chr19:58369950 stopgain 0.042 0 12 hm5C_associated_SNPs_22317 0 0 0 0 1 Nucleus 1 0.500231643799648 0.482108116149902 0.999536712400704 hm5C_site_23253 DeepMRMD:0.482108116149902;iRNA_m5C:0.999536712400704 23254 chr7 130021558 130021558 1 + C G ESCA 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTGT < 41bp 1 0.394476838242996 1 0.28162145614624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021558 nonsynonymous SNV 0.067 4 40 hm5C_associated_SNPs_22318 0 0 0 0 2 Endoplasmic reticulum 1 0.500231645701629 1 0.999536708596742 hm5C_site_23254 DeepMRMD:1;iRNA_m5C:0.999536708596742 23255 chr7 130021558 130021558 1 + C G ESCA 130021540 + 130021520 130021560 41 GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTGTG < 41bp 1 0.67417820329631 1 0.771281719207764 experiment 0.65164359340738 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021540 chr7:130021558 nonsynonymous SNV 0.067 4 39 hm5C_associated_SNPs_22319 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.457436561584472 0.999536712157815 hm5C_site_23255 DeepMRMD:0.457436561584472;iRNA_m5C:0.999536712157815 23256 chr7 130021558 130021558 1 + C G ESCA 130021544 + 130021524 130021564 41 GCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTGGAGT GCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTGTGGAGT < 41bp 1 0.189080667790872 1 0.428538084030151 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021544 chr7:130021558 nonsynonymous SNV 0.067 4 35 hm5C_associated_SNPs_22320 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644383783 1 0.999536711232434 hm5C_site_23256 DeepMRMD:1;iRNA_m5C:0.999536711232434 23257 chr7 130021558 130021558 1 + C G ESCA 130021554 + 130021534 130021574 41 AGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCACGGCAT AGCATCCAGGCGGTCAAGATCTTTGTGGAGTCCCACGGCAT < 41bp 1 0.380863753763253 1 0.0768716335296631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021554 chr7:130021558 nonsynonymous SNV 0.067 4 25 hm5C_associated_SNPs_22322 0 0 0 0 2 Endoplasmic reticulum 1 0.500231576322635 1 0.99953684735473 hm5C_site_23257 DeepMRMD:1;iRNA_m5C:0.99953684735473 23258 chr7 130021558 130021558 1 + C G ESCA 130021565 + 130021545 130021585 41 GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGA GGTCAAGATCTTTGTGGAGTCCCACGGCATCAGCTATGAGA < 41bp 1 0.19745858505617 1 0.0826540291309357 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021565 chr7:130021558 nonsynonymous SNV 0.067 4 14 hm5C_associated_SNPs_22323 0 0 0 0 2 Endoplasmic reticulum 1 0.500231707691382 1 0.999536584617235 hm5C_site_23258 DeepMRMD:1;iRNA_m5C:0.999536584617235 23259 chr7 130021558 130021558 1 + C G ESCA 130021566 + 130021546 130021586 41 GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGAC GTCAAGATCTTTGTGGAGTCCCACGGCATCAGCTATGAGAC < 41bp 1 0.407990670138166 1 0.49773296713829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021566 chr7:130021558 nonsynonymous SNV 0.067 4 13 hm5C_associated_SNPs_22324 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164580938 1 0.999536708381239 hm5C_site_23259 DeepMRMD:1;iRNA_m5C:0.999536708381239 23260 chr7 130021558 130021558 1 + C G ESCA 130021572 + 130021552 130021592 41 ATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT ATCTTTGTGGAGTCCCACGGCATCAGCTATGAGACCATGAT < 41bp 1 0.378654837107548 1 0.454795092344284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021572 chr7:130021558 nonsynonymous SNV 0.067 4 7 hm5C_associated_SNPs_22327 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644235301 1 0.999536711529398 hm5C_site_23260 DeepMRMD:1;iRNA_m5C:0.999536711529398 23261 chr7 130021558 130021558 1 + C G ESCA 130021575 + 130021555 130021595 41 TTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGA TTTGTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGA < 41bp 1 0.688084520029682 1 0.428153216838837 experiment 0.623830959940636 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021575 chr7:130021558 nonsynonymous SNV 0.067 4 4 hm5C_associated_SNPs_22328 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643995735 1 0.99953671200853 hm5C_site_23261 DeepMRMD:1;iRNA_m5C:0.99953671200853 23262 chr7 130021558 130021558 1 + C G ESCA 130021578 + 130021558 130021598 41 CTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGAGGA GTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGAGGA < 41bp 1 0.463141724769016 1 0.158509075641632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021578 chr7:130021558 nonsynonymous SNV 0.067 4 1 hm5C_associated_SNPs_22329 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643923204 1 0.999536712153592 hm5C_site_23262 DeepMRMD:1;iRNA_m5C:0.999536712153592 23263 chr2 217364062 217364062 1 + A T ESCA 217364052 + 217364032 217364072 41 GGGACCCGCTATGGGGCCTCCCTCCGGAAAATGGTGAAGAA GGGACCCGCTATGGGGCCTCCCTCCGGAAATTGGTGAAGAA < 41bp 1 0.110667542628645 1 0.190938293933868 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364052 chr2:217364062 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_22330 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23263 DeepMRMD:1;iRNA_m5C:0.999536712157815 23264 chr22 32889257 32889257 1 + G C ESCA 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAGGTTTTTATATCTGCCTGATTTTCGAGGTGAT < 41bp 1 0.289535369509558 1 0.1242555975914 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889257 nonsynonymous SNV 0.975 4 25 hm5C_associated_SNPs_22331 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_23264 DeepMRMD:1;iRNA_m5C:0.999536712157815 23265 chr1 22333434 22333434 1 + C G ESCA 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCGTCACTCC < 41bp 1 0.09991611822045 1 0.162553995847702 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333434 synonymous SNV . 0 34 hm5C_associated_SNPs_22332 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643917142 1 0.999536712165715 hm5C_site_23265 DeepMRMD:1;iRNA_m5C:0.999536712165715 23266 chr1 22333434 22333434 1 + C G ESCA 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCGTCACTCCC < 41bp 1 0.318675252507838 1 0.470996022224426 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333434 synonymous SNV . 0 33 hm5C_associated_SNPs_22333 0 0 0 0 2 Endoplasmic reticulum 1 0.500231645113577 1 0.999536709772845 hm5C_site_23266 DeepMRMD:1;iRNA_m5C:0.999536709772845 23267 chr1 22333434 22333434 1 + C G ESCA 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCGTCCAGCTCGCGTCACTCCCTCC < 41bp 1 0.376023081493322 1 0.217841893434525 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333434 synonymous SNV . 0 30 hm5C_associated_SNPs_22334 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920956 1 0.999536712158088 hm5C_site_23267 DeepMRMD:1;iRNA_m5C:0.999536712158088 23268 chr1 22333434 22333434 1 + C G ESCA 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCGTCCAGCTCGCGTCACTCCCTCCC < 41bp 1 0.567113866591964 1 0.541480720043182 experiment 0.865772266816073 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333434 synonymous SNV . 0 29 hm5C_associated_SNPs_22335 0 0 0 0 2 Endoplasmic reticulum 1 0.500230189994069 0.917038559913636 0.999539620011862 hm5C_site_23268 DeepMRMD:0.917038559913636;iRNA_m5C:0.999539620011862 23269 chr1 22333434 22333434 1 + C G ESCA 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTG < 41bp 1 0.570434970858376 1 0.454955607652664 experiment 0.859130058283248 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333434 synonymous SNV . 0 22 hm5C_associated_SNPs_22337 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_23269 DeepMRMD:1;iRNA_m5C:0.999536712157815 23270 chr1 22333434 22333434 1 + C G ESCA 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.101257568311253 1 0.161202549934387 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333434 synonymous SNV . 0 19 hm5C_associated_SNPs_22338 0 0 0 0 2 Endoplasmic reticulum 1 0.500316933162752 1 0.999366133674496 hm5C_site_23270 DeepMRMD:1;iRNA_m5C:0.999366133674496 23271 chr1 22333434 22333434 1 + C G ESCA 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.329834141583401 1 0.0847916007041931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333434 synonymous SNV . 0 17 hm5C_associated_SNPs_22339 0 0 0 0 2 Endoplasmic reticulum 1 0.500359386854192 1 0.999281226291617 hm5C_site_23271 DeepMRMD:1;iRNA_m5C:0.999281226291617 23272 chr1 22333434 22333434 1 + C G ESCA 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0983190388017366 1 0.0554751455783844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333434 synonymous SNV . 0 15 hm5C_associated_SNPs_22340 0 0 0 0 2 Endoplasmic reticulum 1 0.500231639870986 1 0.999536720258028 hm5C_site_23272 DeepMRMD:1;iRNA_m5C:0.999536720258028 23273 chr1 22333434 22333434 1 + C G ESCA 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTT < 41bp 1 0.0650815671528859 1 0.0307623147964478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333434 synonymous SNV . 0 14 hm5C_associated_SNPs_22341 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23273 DeepMRMD:1;iRNA_m5C:0.999536712157815 23274 chr1 22333434 22333434 1 + C G ESCA 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTTC < 41bp 1 0.46256586238108 1 0.100387394428253 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333434 synonymous SNV . 0 13 hm5C_associated_SNPs_22342 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643831509 1 0.999536712336982 hm5C_site_23274 DeepMRMD:1;iRNA_m5C:0.999536712336982 23275 chr1 22333434 22333434 1 + C G ESCA 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTTCCC < 41bp 1 0.370497204973474 1 0.250780463218689 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333434 synonymous SNV . 0 11 hm5C_associated_SNPs_22343 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392103 1 0.999536712157939 hm5C_site_23275 DeepMRMD:1;iRNA_m5C:0.999536712157939 23276 chr1 22333434 22333434 1 + C G ESCA 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCGCGTCACTCCCTCCCGCTGGTGACATCCTTCCCA < 41bp 1 0.341985552565093 1 0.559699952602386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333434 synonymous SNV . 0 10 hm5C_associated_SNPs_22344 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643945985 0.880600094795228 0.999536712108031 hm5C_site_23276 DeepMRMD:0.880600094795228;iRNA_m5C:0.999536712108031 23277 chr9 125154752 125154752 1 + G A ESCA 125154756 + 125154736 125154776 41 CAAGACCTGTCCCTACGTTTCCTTCCGTGTGCCGGATGCCA CAAGACCTGTCCCTACATTTCCTTCCGTGTGCCGGATGCCA < 41bp 1 0.0190368045035736 1 0.0271171033382416 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125154756 chr9:125154752 nonsynonymous SNV 0.992 3 17 hm5C_associated_SNPs_22346 0 0 1 0 0 nucleolus 1 0.500231643955559 1 0.999536712088883 hm5C_site_23277 DeepMRMD:1;iRNA_m5C:0.999536712088883 23278 chr7 128119326 128119326 1 + G A ESCA 128119323 + 128119303 128119343 41 CGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT CGAATTCCCTGAGCTGGCACCTAACCAAAATCAAAATCATT < 41bp 1 0.0511773227798958 1 0.0862061977386475 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METTL2B ENSG00000165055 CDS Human protein_coding chr7:128119323 chr7:128119326 nonsynonymous SNV 0.938 0 24 hm5C_associated_SNPs_22347 0 0 1 0 0 Ribosome 1 0.500231643920758 1 0.999536712158485 hm5C_site_23278 DeepMRMD:1;iRNA_m5C:0.999536712158485 23279 chr16 67914539 67914539 1 + G A ESCA 67914550 + 67914530 67914570 41 CCCCTAGCCGCACTCGTTCCCCTGATGTCATCTCCTCAGCT CCCCTAGCCACACTCGTTCCCCTGATGTCATCTCCTCAGCT < 41bp 1 0.365124275412766 1 0.110576182603836 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914550 chr16:67914539 nonsynonymous SNV 0.747 4 10 hm5C_associated_SNPs_22348 0 0 0 0 1 Cytosol 1 0.500231637598577 1 0.999536724802847 hm5C_site_23279 DeepMRMD:1;iRNA_m5C:0.999536724802847 23280 chr14 52417396 52417396 1 + G A ESCA 52417401 + 52417381 52417421 41 TCTATCCAGCACTCCGATGGCCAGCAACAACACCGCCAGCA TCTATCCAGCACTCCAATGGCCAGCAACAACACCGCCAGCA < 41bp 1 0.321256160576121 1 0.381422251462936 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNG2 ENSG00000186469 CDS Human protein_coding chr14:52417401 chr14:52417396 synonymous SNV . 0 16 hm5C_associated_SNPs_22349 0 0 0 0 1 Cytosol 1 0.500231643587032 1 0.999536712825937 hm5C_site_23280 DeepMRMD:1;iRNA_m5C:0.999536712825937 23281 chr15 29346720 29346720 1 + C A ESCA 29346702 + 29346682 29346722 41 GAGGAGGCCAACGGGAACACCGGCGCCTCCCCCTACCGCCT GAGGAGGCCAACGGGAACACCGGCGCCTCCCCCTACCGACT < 41bp 1 0.668681098207398 1 0.756133317947388 experiment 0.662637803585205 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control APBA2 ENSG00000034053 CDS Human protein_coding chr15:29346702 chr15:29346720 synonymous SNV . 0 39 hm5C_associated_SNPs_22350 0 0 1 0 0 Cytosol 1 0.500231713315551 0.487733364105224 0.999536573368899 hm5C_site_23281 DeepMRMD:0.487733364105224;iRNA_m5C:0.999536573368899 23282 chr5 9549026 9549026 1 + G C ESCA 9549007 + 9548987 9549027 41 TTGAAAAATGCCATCCATTTCCTGATTCACCTCAATTCTGT TTGAAAAATGCCATCCATTTCCTGATTCACCTCAATTCTCT < 41bp 1 0.347750238000878 1 0.0627144277095795 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000250786 ncRNA_intronic Human lincRNA chr5:9549007 chr5:9549026 . . 0 40 hm5C_associated_SNPs_22351 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23282 DeepMRMD:1;iRNA_m5C:0.999536712157815 23283 chr20 5958593 5958593 1 + A C ESCA 5958574 + 5958554 5958594 41 TGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAA TGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTCA < 41bp 1 0.087741575992355 1 0.240261882543564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5958574 chr20:5958593 synonymous SNV . 0 40 hm5C_associated_SNPs_22352 0 0 0 0 2 Ribosome 1 0.500231660357384 1 0.999536679285231 hm5C_site_23283 DeepMRMD:1;iRNA_m5C:0.999536679285231 23284 chr19 7676676 7676676 1 + G A ESCA 7676663 + 7676643 7676683 41 GGAGACCCTGTGCTCCTCCGCTCTGTGAGCTCGGACAGCCT GGAGACCCTGTGCTCCTCCGCTCTGTGAGCTCGAACAGCCT < 41bp 1 0.257946613322667 1 0.106263846158981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7676663 chr19:7676676 nonsynonymous SNV 0.648 2 34 hm5C_associated_SNPs_22354 0 0 1 0 0 nucleus 1 0.500231644020074 1 0.999536711959852 hm5C_site_23284 DeepMRMD:1;iRNA_m5C:0.999536711959852 23285 chr6 158870089 158870089 1 + C T ESCA 158870090 + 158870070 158870110 41 TGCCACGGCAGAATGCTGGCCCACGTCCTCTTGCACGAGTC TGCCACGGCAGAATGCTGGTCCACGTCCTCTTGCACGAGTC < 41bp 1 0.175551842505789 1 0.115646094083786 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158870090 chr6:158870089 nonsynonymous SNV 0.996 4 20 hm5C_associated_SNPs_22355 0 0 1 0 1 Ribosome 1 0.500418094924856 1 0.999163810150289 hm5C_site_23285 DeepMRMD:1;iRNA_m5C:0.999163810150289 23286 chr1 109643014 109643014 1 + G A ESCA 109642996 + 109642976 109643016 41 CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTGAC CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTAAC < 41bp 1 0.220684252098262 1 0.0240156650543213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642996 chr1:109643014 . . 0 39 hm5C_associated_SNPs_22356 0 0 1 5 0 unknown 1 0.500231643933349 1 0.999536712133301 hm5C_site_23286 DeepMRMD:1;iRNA_m5C:0.999536712133301 23287 chr1 109643014 109643014 1 + G A ESCA 109643006 + 109642986 109643026 41 ACACTTTGATCTTATTTGATCGGATCGTGACCCCAGCCCCG ACACTTTGATCTTATTTGATCGGATCGTAACCCCAGCCCCG < 41bp 1 0.516552904794701 1 0.458073079586029 experiment 0.966894190410598 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643006 chr1:109643014 . . 0 29 hm5C_associated_SNPs_22357 0 0 1 5 0 unknown 1 0.500231648150292 1 0.999536703699415 hm5C_site_23287 DeepMRMD:1;iRNA_m5C:0.999536703699415 23288 chr1 109643014 109643014 1 + G A ESCA 109643011 + 109642991 109643031 41 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGG TTGATCTTATTTGATCGGATCGTAACCCCAGCCCCGCCGGG < 41bp 1 0.323185275699469 1 0.136850923299789 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643011 chr1:109643014 . . 0 24 hm5C_associated_SNPs_22358 0 0 1 5 0 unknown 1 0.500231643916542 1 0.999536712166915 hm5C_site_23288 DeepMRMD:1;iRNA_m5C:0.999536712166915 23289 chr1 109643014 109643014 1 + G A ESCA 109643018 + 109642998 109643038 41 TATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC TATTTGATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCC < 41bp 1 0.399214092244818 1 0.400532275438309 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643018 chr1:109643014 . . 0 17 hm5C_associated_SNPs_22359 0 0 1 5 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_23289 DeepMRMD:1;iRNA_m5C:0.999536712157818 23290 chr1 109643014 109643014 1 + G A ESCA 109643019 + 109642999 109643039 41 ATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG ATTTGATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCG < 41bp 1 0.590035124499388 1 0.405888706445694 experiment 0.819929751001224 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643019 chr1:109643014 . . 0 16 hm5C_associated_SNPs_22360 0 0 1 5 0 unknown 1 0.50023164390927 1 0.99953671218146 hm5C_site_23290 DeepMRMD:1;iRNA_m5C:0.99953671218146 23291 chr1 109643014 109643014 1 + G A ESCA 109643023 + 109643003 109643043 41 GATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT GATCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAAT < 41bp 1 0.29634080338266 1 0.206756502389908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643023 chr1:109643014 . . 0 12 hm5C_associated_SNPs_22361 0 0 1 5 0 unknown 1 0.500231637424879 1 0.999536725150242 hm5C_site_23291 DeepMRMD:1;iRNA_m5C:0.999536725150242 23292 chr1 109643014 109643014 1 + G A ESCA 109643025 + 109643005 109643045 41 TCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA TCGGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGA < 41bp 1 0.650392150887186 1 0.466456562280655 experiment 0.699215698225627 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643025 chr1:109643014 . . 0 10 hm5C_associated_SNPs_22362 0 0 1 5 0 unknown 1 0.500231639801142 1 0.999536720397715 hm5C_site_23292 DeepMRMD:1;iRNA_m5C:0.999536720397715 23293 chr1 109643014 109643014 1 + G A ESCA 109643027 + 109643007 109643047 41 GGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA GGATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA < 41bp 1 0.356816960265359 1 0.355398207902908 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643027 chr1:109643014 . . 0 8 hm5C_associated_SNPs_22363 0 0 1 5 0 unknown 1 0.50023164392113 1 0.999536712157739 hm5C_site_23293 DeepMRMD:1;iRNA_m5C:0.999536712157739 23294 chr1 109643014 109643014 1 + G A ESCA 109643028 + 109643008 109643048 41 GATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA GATCGTAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA < 41bp 1 0.608654435115792 1 0.557649970054626 experiment 0.782691129768417 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643028 chr1:109643014 . . 0 7 hm5C_associated_SNPs_22364 0 0 1 5 0 unknown 1 0.50023164392109 0.884700059890748 0.999536712157819 hm5C_site_23294 DeepMRMD:0.884700059890748;iRNA_m5C:0.999536712157819 23295 chr1 109643014 109643014 1 + G A ESCA 109643033 + 109643013 109643053 41 TGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT TAACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT < 41bp 1 0.128309046267526 1 0.155891358852386 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643033 chr1:109643014 . . 0 2 hm5C_associated_SNPs_22365 0 0 1 5 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23295 DeepMRMD:1;iRNA_m5C:0.999536712157815 23296 chr11 65396125 65396125 1 + C T ESCA 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATTACCTG < 41bp 1 0.433044810846526 1 0.640671253204346 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396125 synonymous SNV . 0 36 hm5C_associated_SNPs_22366 0 0 1 0 2 Ribosome 1 0.500231643922025 0.718657493591308 0.999536712155951 hm5C_site_23296 DeepMRMD:0.718657493591308;iRNA_m5C:0.999536712155951 23297 chr19 42373777 42373777 1 + A G ESCA 42373769 + 42373749 42373789 41 TGACCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTCA TGACCCTTCCCTCCCCACAGCGGCCGCAGACTGACACCTCA < 41bp 1 0.240821123054564 1 0.515654385089874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373769 chr19:42373777 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_22367 0 0 1 0 2 Cytosol 1 0.500231643909154 0.968691229820252 0.999536712181691 hm5C_site_23297 DeepMRMD:0.968691229820252;iRNA_m5C:0.999536712181691 23298 chr19 42373777 42373777 1 + A G ESCA 42373772 + 42373752 42373792 41 CCCTTCCCTCCCCACAGCGGCCGCAAACTGACACCTCAGGG CCCTTCCCTCCCCACAGCGGCCGCAGACTGACACCTCAGGG < 41bp 1 0.272776445471914 1 0.329760789871216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373772 chr19:42373777 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_22368 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23298 DeepMRMD:1;iRNA_m5C:0.999536712157815 23299 chr19 42373777 42373777 1 + A G ESCA 42373779 + 42373759 42373799 41 CTCCCCACAGCGGCCGCAAACTGACACCTCAGGGACAAAGA CTCCCCACAGCGGCCGCAGACTGACACCTCAGGGACAAAGA < 41bp 1 0.285635627974022 1 0.288530349731445 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373779 chr19:42373777 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_22369 0 0 1 0 2 Cytosol 1 0.500231643920912 1 0.999536712158176 hm5C_site_23299 DeepMRMD:1;iRNA_m5C:0.999536712158176 23300 chr19 42373777 42373777 1 + A G ESCA 42373785 + 42373765 42373805 41 ACAGCGGCCGCAAACTGACACCTCAGGGACAAAGAGATCTG ACAGCGGCCGCAGACTGACACCTCAGGGACAAAGAGATCTG < 41bp 1 0.359666391216999 1 0.138155162334442 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373785 chr19:42373777 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_22370 0 0 1 0 2 Cytosol 1 0.50023164391405 1 0.999536712171899 hm5C_site_23300 DeepMRMD:1;iRNA_m5C:0.999536712171899 23301 chr19 42373777 42373777 1 + A G ESCA 42373794 + 42373774 42373814 41 GCAAACTGACACCTCAGGGACAAAGAGATCTGGACAGAATC GCAGACTGACACCTCAGGGACAAAGAGATCTGGACAGAATC < 41bp 1 0.300405187164097 1 0.30560439825058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373794 chr19:42373777 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_22371 0 0 1 0 2 Cytosol 1 0.500231643926684 1 0.999536712146633 hm5C_site_23301 DeepMRMD:1;iRNA_m5C:0.999536712146633 23302 chr17 28712032 28712032 1 + G A ESCA 28712048 + 28712028 28712068 41 GCATGGTGGCTCAGTGGTAGCAAGCTATCCTTTTGATGATT GCATAGTGGCTCAGTGGTAGCAAGCTATCCTTTTGATGATT < 41bp 1 0.416070794278813 1 0.253881633281708 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28712048 chr17:28712032 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_22372 0 0 1 0 1 Nucleus 1 0.500149988580467 1 0.999700022839065 hm5C_site_23302 DeepMRMD:1;iRNA_m5C:0.999700022839065 23303 chr5 176524671 176524671 1 + G T ESCA 176524669 + 176524649 176524689 41 TCCCCTTCGGGTCTGGGGTGCAGACATGAGCAAGGCTCAAG TCCCCTTCGGGTCTGGGGTGCATACATGAGCAAGGCTCAAG < 41bp 1 0.0770851397452896 1 0.0638401210308075 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524669 chr5:176524671 nonsynonymous SNV 0.399 1 23 hm5C_associated_SNPs_22373 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_23303 DeepMRMD:1;iRNA_m5C:0.999536712157815 23304 chr10 43292443 43292443 1 + C A ESCA 43292423 + 43292403 43292443 41 AAAGCAGCTCTCCCCACTTTCGATTCTGGGCATTGCACAGC AAAGCAGCTCTCCCCACTTTCGATTCTGGGCATTGCACAGA < 41bp 1 0.233061858323458 1 0.175612837076187 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292423 chr10:43292443 nonsynonymous SNV 0.824 1 41 hm5C_associated_SNPs_22374 0 0 1 0 0 chromatin 1 0.500231939010817 1 0.999536121978365 hm5C_site_23304 DeepMRMD:1;iRNA_m5C:0.999536121978365 23305 chr5 139866549 139866549 1 + C T ESCA 139866547 + 139866527 139866567 41 TGAGTTGACTTTTTAGGTGCCACGTGTGCCAACGCATACAC TGAGTTGACTTTTTAGGTGCCATGTGTGCCAACGCATACAC < 41bp 1 0.221807295679892 1 0.123194843530655 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139866547 chr5:139866549 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_22375 0 0 1 0 2 unknown 1 0.500232426222561 1 0.999535147554878 hm5C_site_23305 DeepMRMD:1;iRNA_m5C:0.999535147554878 23306 chr4 5733348 5733348 1 + G T ESCA 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCAGCCGCACCTTCCTCCTGGTGAACGCCTTCCC < 41bp 1 0.0391483449968735 1 0.0601702630519867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733348 nonsynonymous SNV 0.026 1 26 hm5C_associated_SNPs_22376 0 0 1 0 1 Nucleus 1 0.500231645509277 1 0.999536708981445 hm5C_site_23306 DeepMRMD:1;iRNA_m5C:0.999536708981445 23307 chr12 105519884 105519884 1 + G T ESCA 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGCACATAGTATTCGGTCAATTTTTTCAAATGTAGAAG < 41bp 1 0.148390203048411 1 0.100989192724228 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519884 nonsynonymous SNV 0.999 0 29 hm5C_associated_SNPs_22377 0 0 1 0 1 unknown 1 0.499931542400044 1 1 hm5C_site_23307 DeepMRMD:1;iRNA_m5C:1 23308 chr12 105519884 105519884 1 + G T ESCA 105519885 + 105519865 105519905 41 TAGTATTCGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG TAGTATTCGGTCAATTTTTTCAAATGTAGAAGCCAAACTTG < 41bp 1 0.413908290532244 1 0.760771095752716 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519885 chr12:105519884 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_22378 0 0 1 0 1 unknown 1 0.50023164392114 0.478457808494568 0.999536712157721 hm5C_site_23308 DeepMRMD:0.478457808494568;iRNA_m5C:0.999536712157721 23309 chr12 105519884 105519884 1 + G T ESCA 105519898 + 105519878 105519918 41 ATTTTTGCAAATGTAGAAGCCAAACTTGGTAATGTAAATCG ATTTTTTCAAATGTAGAAGCCAAACTTGGTAATGTAAATCG < 41bp 1 0.166367082343042 1 0.0910443365573883 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519898 chr12:105519884 nonsynonymous SNV 0.999 0 7 hm5C_associated_SNPs_22379 0 0 1 0 1 unknown 1 0.500231643920976 1 0.999536712158049 hm5C_site_23309 DeepMRMD:1;iRNA_m5C:0.999536712158049 23310 chr12 105519884 105519884 1 + G T ESCA 105519902 + 105519882 105519922 41 TTGCAAATGTAGAAGCCAAACTTGGTAATGTAAATCGCATT TTTCAAATGTAGAAGCCAAACTTGGTAATGTAAATCGCATT < 41bp 1 0.490069387763752 1 0.109992235898972 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519902 chr12:105519884 nonsynonymous SNV 0.999 0 3 hm5C_associated_SNPs_22380 0 0 1 0 1 unknown 1 0.5002316469214 1 0.9995367061572 hm5C_site_23310 DeepMRMD:1;iRNA_m5C:0.9995367061572 23311 chr16 14972669 14972669 1 + G A ESCA 14972674 + 14972654 14972694 41 TGACCCAGGACAACGGCATTCTGACATTCTCAAACCTGGTA TGACCCAGGACAACGACATTCTGACATTCTCAAACCTGGTA < 41bp 1 0.273764805909908 1 0.0896047055721283 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972674 chr16:14972669 nonsynonymous SNV 0.989 4 16 hm5C_associated_SNPs_22381 0 0 0 0 2 Nucleus 1 0.498904682396714 1 1 hm5C_site_23311 DeepMRMD:1;iRNA_m5C:1 23312 chr16 14972669 14972669 1 + G A ESCA 14972678 + 14972658 14972698 41 CCAGGACAACGGCATTCTGACATTCTCAAACCTGGTAACGT CCAGGACAACGACATTCTGACATTCTCAAACCTGGTAACGT < 41bp 1 0.0384811628823164 1 0.0115659832954407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972678 chr16:14972669 nonsynonymous SNV 0.989 4 12 hm5C_associated_SNPs_22382 0 0 0 0 2 Nucleus 1 0.500231626809773 1 0.999536746380454 hm5C_site_23312 DeepMRMD:1;iRNA_m5C:0.999536746380454 23313 chr16 14972669 14972669 1 + G A ESCA 14972682 + 14972662 14972702 41 GACAACGGCATTCTGACATTCTCAAACCTGGTAACGTGTTC GACAACGACATTCTGACATTCTCAAACCTGGTAACGTGTTC < 41bp 1 0.541247213730643 1 0.840597748756409 experiment 0.917505572538715 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972682 chr16:14972669 nonsynonymous SNV 0.989 4 8 hm5C_associated_SNPs_22383 0 0 0 0 2 Nucleus 1 0.500231451433785 0.318804502487182 0.999537097132431 hm5C_site_23313 DeepMRMD:0.318804502487182;iRNA_m5C:0.999537097132431 23314 chr17 3629174 3629174 1 + G C ESCA 3629168 + 3629148 3629188 41 AGGCATCACTGCGCTTTGAGCACCGAGACTTACACTGGGGG AGGCATCACTGCGCTTTGAGCACCGACACTTACACTGGGGG < 41bp 1 0.406806924430453 1 0.417111665010452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HASPIN ENSG00000177602 CDS Human protein_coding chr17:3629168 chr17:3629174 nonsynonymous SNV 1.000 5 27 hm5C_associated_SNPs_22384 0 0 1 0 0 unknown 1 0.500231925772543 1 0.999536148454914 hm5C_site_23314 DeepMRMD:1;iRNA_m5C:0.999536148454914 23315 chr18 13056017 13056017 1 + A T ESCA 13056028 + 13056008 13056048 41 CTTCCTCCAAAAGTGGAAATCTGTTGGAAACCAGTGAGGTA CTTCCTCCATAAGTGGAAATCTGTTGGAAACCAGTGAGGTA < 41bp 1 0.192513642394026 1 0.334879875183105 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056028 chr18:13056017 nonsynonymous SNV 0.577 4 10 hm5C_associated_SNPs_22385 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23315 DeepMRMD:1;iRNA_m5C:0.999536712157815 23316 chr1 173454551 173454551 1 + A G ESCA 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAGAAAAGTTACCTTTTCCCGTCATCGATGATA < 41bp 1 0.0788600619242509 1 0.0266428291797638 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454551 nonsynonymous SNV 0.998 2 29 hm5C_associated_SNPs_22386 0 0 1 0 2 Ribosome 1 0.500231643936979 1 0.999536712126041 hm5C_site_23316 DeepMRMD:1;iRNA_m5C:0.999536712126041 23317 chr16 84035467 84035467 1 + G A GBM 84035478 + 84035458 84035498 41 TTCCGGCACGTCAAGGTGGACACACTGAGCCAGCCTGAGGC TTCCGGCACATCAAGGTGGACACACTGAGCCAGCCTGAGGC < 41bp 1 0.26998319934479 1 0.109562188386917 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84035478 chr16:84035467 nonsynonymous SNV 0.765 0 10 hm5C_associated_SNPs_22387 0 0 0 0 2 exosome 1 0.500231643921071 1 0.999536712157857 hm5C_site_23317 DeepMRMD:1;iRNA_m5C:0.999536712157857 23318 chr8 145151572 145151572 1 + T A GBM 145151587 + 145151567 145151607 41 TCTACTTCAACCCCTACTTTCCTGGCCAGGCCATTGCCATG TCTACATCAACCCCTACTTTCCTGGCCAGGCCATTGCCATG < 41bp 1 0.31516858157247 1 0.129632145166397 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151587 chr8:145151572 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_22388 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23318 DeepMRMD:1;iRNA_m5C:0.999536712157815 23319 chrX 117959260 117959260 1 + T G GBM 117959256 + 117959236 117959276 41 ACAGCCGGCGGCTGAATGCACCCTTGCCGCCTTGGGCCCAT ACAGCCGGCGGCTGAATGCACCCTGGCCGCCTTGGGCCCAT < 41bp 1 0.589088897518702 1 0.065946638584137 experiment 0.821822204962597 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZCCHC12 ENSG00000174460 CDS Human protein_coding chrX:117959256 chrX:117959260 nonsynonymous SNV 0.973 3 25 hm5C_associated_SNPs_22389 0 0 0 0 0 exosome 1 0.500231644009328 1 0.999536711981345 hm5C_site_23319 DeepMRMD:1;iRNA_m5C:0.999536711981345 23320 chr12 112910837 112910837 1 + C G GBM 112910843 + 112910823 112910863 41 AGATATAAAAACATCCTGCCCTGTAAGTATCAATATTCCGC AGATATAAAAACATGCTGCCCTGTAAGTATCAATATTCCGC < 41bp 1 0.274193535909351 1 0.0906911790370941 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112910843 chr12:112910837 nonsynonymous SNV 0.997 5 15 hm5C_associated_SNPs_22390 2 0 0 0 2 Ribosome 1 0.500200312789548 1 0.999599374420905 hm5C_site_23320 DeepMRMD:1;iRNA_m5C:0.999599374420905 not provided not provided 23321 chr3 42242460 42242460 1 + C T GBM 42242472 + 42242452 42242492 41 CCCCGGTCCAGCTTCTACGGCAGCGACATAGGCAACGTCGT CCCCGGTCTAGCTTCTACGGCAGCGACATAGGCAACGTCGT < 41bp 1 0.359515031318188 1 0.0950988531112671 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42242472 chr3:42242460 synonymous SNV . 0 9 hm5C_associated_SNPs_22391 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_23321 DeepMRMD:1;iRNA_m5C:0.999536712157814 23322 chr9 33295248 33295248 1 + C A GBM 33295260 + 33295240 33295280 41 AGGATGACCTCAATGAAAGACCAGCAAAATCTACCTGTGAC AGGATGACATCAATGAAAGACCAGCAAAATCTACCTGTGAC < 41bp 1 0.129014140738161 1 0.293101668357849 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33295260 chr9:33295248 nonsynonymous SNV 0.741 0 9 hm5C_associated_SNPs_22392 0 0 1 0 0 Nucleus 1 0.500231644168952 1 0.999536711662095 hm5C_site_23322 DeepMRMD:1;iRNA_m5C:0.999536711662095 23323 chr9 33295248 33295248 1 + C A GBM 33295261 + 33295241 33295281 41 GGATGACCTCAATGAAAGACCAGCAAAATCTACCTGTGACA GGATGACATCAATGAAAGACCAGCAAAATCTACCTGTGACA < 41bp 1 0.688270435894032 1 0.129570722579956 experiment 0.623459128211936 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33295261 chr9:33295248 nonsynonymous SNV 0.741 0 8 hm5C_associated_SNPs_22393 0 0 1 0 0 Nucleus 1 0.50023164747865 1 0.999536705042699 hm5C_site_23323 DeepMRMD:1;iRNA_m5C:0.999536705042699 23324 chr5 162898195 162898195 1 + C T GBM 162898209 + 162898189 162898229 41 AGTTTTCTGAAAATGGTAACCAGAAGAATTTGAGAATTCTA AGTTTTTTGAAAATGGTAACCAGAAGAATTTGAGAATTCTA < 41bp 1 0.64117359306848 1 0.745211362838745 experiment 0.71765281386304 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162898209 chr5:162898195 nonsynonymous SNV 0.997 1 7 hm5C_associated_SNPs_22394 0 0 0 0 1 Cytosol 1 0.500231643921093 0.50957727432251 0.999536712157815 hm5C_site_23324 DeepMRMD:0.50957727432251;iRNA_m5C:0.999536712157815 23325 chr10 70666637 70666637 1 + C A GBM 70666624 + 70666604 70666644 41 AGAAGGATTTAATAGACTTTCAGATGAATTCTCCAAATCTC AGAAGGATTTAATAGACTTTCAGATGAATTCTCAAAATCTC < 41bp 1 0.485641862764847 1 0.533185601234436 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX50 ENSG00000107625 CDS Human protein_coding chr10:70666624 chr10:70666637 synonymous SNV . 0 34 hm5C_associated_SNPs_22395 0 0 1 0 0 chromatin 1 0.500231643920619 0.933628797531128 0.999536712158762 hm5C_site_23325 DeepMRMD:0.933628797531128;iRNA_m5C:0.999536712158762 23326 chr13 24858276 24858276 1 + C T GBM 24858291 + 24858271 24858311 41 AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG AGTTTTTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG < 41bp 1 0.147422786356976 1 0.267778396606445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858291 chr13:24858276 nonsynonymous SNV 0.972 0 6 hm5C_associated_SNPs_22396 0 0 1 0 1 Cytosol 1 0.500231643932144 1 0.999536712135712 hm5C_site_23326 DeepMRMD:1;iRNA_m5C:0.999536712135712 23327 chr12 117426535 117426535 1 + T C GBM 117426534 + 117426514 117426554 41 CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCC CAGTAGCCGCTGCTGGAGATCCGATGTACCTGCTCAAAGCC < 41bp 1 0.253350953784949 1 0.391889899969101 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426534 chr12:117426535 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_22398 0 0 0 0 1 Cytosol 1 0.500231643921368 1 0.999536712157264 hm5C_site_23327 DeepMRMD:1;iRNA_m5C:0.999536712157264 23328 chr6 7594065 7594065 1 + T A GBM 7594067 + 7594047 7594087 41 ATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCAT ATTGAGGAAAATGGGCTAAACCAAAGAAGAAGAGGTACCAT < 41bp 1 0.514977913735632 1 0.394603967666626 experiment 0.970044172528736 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594067 chr6:7594065 stopgain 0.994 1 19 hm5C_associated_SNPs_22399 0 0 1 1 2 Ribosome 1 0.50023164388717 1 0.99953671222566 hm5C_site_23328 DeepMRMD:1;iRNA_m5C:0.99953671222566 23329 chr6 7594065 7594065 1 + T A GBM 7594068 + 7594048 7594088 41 TTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCATA TTGAGGAAAATGGGCTAAACCAAAGAAGAAGAGGTACCATA < 41bp 1 0.621469011372945 1 0.662728905677795 experiment 0.75706197725411 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594068 chr6:7594065 stopgain 0.994 1 18 hm5C_associated_SNPs_22400 0 0 1 1 2 Ribosome 1 0.500231643921092 0.67454218864441 0.999536712157815 hm5C_site_23329 DeepMRMD:0.67454218864441;iRNA_m5C:0.999536712157815 23330 chr7 100200148 100200148 1 + C T GBM 100200134 + 100200114 100200154 41 CCCTCCTCACTGCCTGCGCCCTGCTGCCTTTTGCCCAGGGC CCCTCCTCACTGCCTGCGCCCTGCTGCCTTTTGCTCAGGGC < 41bp 1 0.270781605816162 1 0.154189974069595 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100200134 chr7:100200148 synonymous SNV . 0 35 hm5C_associated_SNPs_22401 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643553371 1 0.999536712893257 hm5C_site_23330 DeepMRMD:1;iRNA_m5C:0.999536712893257 23331 chr19 3151776 3151776 1 + G A GBM 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCAGCCACATGCCCACCACTGGCATCAACGAGTACTG < 41bp 1 0.378075046190903 1 0.0447452962398529 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151776 nonsynonymous SNV 0.980 3 11 hm5C_associated_SNPs_22402 0 0 0 0 2 exosome 1 0.500231623735767 1 0.999536752528467 hm5C_site_23331 DeepMRMD:1;iRNA_m5C:0.999536752528467 23332 chr7 142459677 142459677 1 + G A GBM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTGGAGGGGAATAAGCAGTT < 41bp 1 0.511685952429781 1 0.364190697669983 experiment 0.976628095140438 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459677 nonsynonymous SNV 0.168 5 34 hm5C_associated_SNPs_22404 0 0 0 0 1 Cytosol 1 0.500231397567739 1 0.999537204864523 hm5C_site_23332 DeepMRMD:1;iRNA_m5C:0.999537204864523 23333 chr7 142459677 142459677 1 + G A GBM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGAATAAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.608066562989852 1 0.336292386054993 experiment 0.783866874020295 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459677 nonsynonymous SNV 0.168 5 18 hm5C_associated_SNPs_22405 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_23333 DeepMRMD:1;iRNA_m5C:0.999536712157815 23334 chr7 142459677 142459677 1 + G A GBM 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATAAGCAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.597434548327356 1 0.0553243160247803 experiment 0.805130903345288 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459677 nonsynonymous SNV 0.168 5 13 hm5C_associated_SNPs_22406 0 0 0 0 1 Cytosol 1 0.500231643788336 1 0.999536712423327 hm5C_site_23334 DeepMRMD:1;iRNA_m5C:0.999536712423327 23335 chr7 142459677 142459677 1 + G A GBM 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATAAGCAGTTCATCAATGCAGCCAAGATCATCCG < 41bp 1 0.631853112447881 1 0.210549771785736 experiment 0.736293775104239 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459677 nonsynonymous SNV 0.168 5 10 hm5C_associated_SNPs_22407 0 0 0 0 1 Cytosol 1 0.500231643876831 1 0.999536712246339 hm5C_site_23335 DeepMRMD:1;iRNA_m5C:0.999536712246339 23336 chr7 142459677 142459677 1 + G A GBM 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATAAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC < 41bp 1 0.528316439188403 1 0.0289740562438965 experiment 0.943367121623193 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459677 nonsynonymous SNV 0.168 5 5 hm5C_associated_SNPs_22408 0 0 0 0 1 Cytosol 1 0.500231646932659 1 0.999536706134683 hm5C_site_23336 DeepMRMD:1;iRNA_m5C:0.999536706134683 23337 chr7 142459677 142459677 1 + G A GBM 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TAAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC < 41bp 1 0.361430482268459 1 0.317424535751343 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459677 nonsynonymous SNV 0.168 5 2 hm5C_associated_SNPs_22409 0 0 0 0 1 Cytosol 1 0.500231643692141 1 0.999536712615719 hm5C_site_23337 DeepMRMD:1;iRNA_m5C:0.999536712615719 23338 chr3 40499435 40499435 1 + C T GBM 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGCCGGGTGGCCTATGTCTCCTTTGGACCTTATGCCGGAAA < 41bp 1 0.34338788516336 1 0.0951830446720123 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499435 nonsynonymous SNV 0.997 0 31 hm5C_associated_SNPs_22410 0 0 1 0 1 Ribosome 1 0.500231643918678 1 0.999536712162643 hm5C_site_23338 DeepMRMD:1;iRNA_m5C:0.999536712162643 23339 chr2 120005512 120005512 1 + G T GBM 120005510 + 120005490 120005530 41 GCCAGAACAAGTTCTTCAAGCTGCCCGTGTCCGTGGTCAAC GCCAGAACAAGTTCTTCAAGCTTCCCGTGTCCGTGGTCAAC < 41bp 1 0.0934054193104632 1 0.0142217874526978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120005510 chr2:120005512 synonymous SNV . 0 23 hm5C_associated_SNPs_22412 0 0 1 0 0 Ribosome 1 0.50023162268765 1 0.999536754624699 hm5C_site_23339 DeepMRMD:1;iRNA_m5C:0.999536754624699 23340 chr1 87208016 87208016 1 + C A GBM 87208023 + 87208003 87208043 41 ATCACCTCTCCTTCCAACCTCAGTGACCTTAAGGAGTGTAG ATCACCTCTCCTTACAACCTCAGTGACCTTAAGGAGTGTAG < 41bp 1 0.29512193078751 1 0.307823657989502 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87208023 chr1:87208016 nonsynonymous SNV 0.982 0 14 hm5C_associated_SNPs_22413 0 0 1 0 0 Ribosome 1 0.500231642833402 1 0.999536714333197 hm5C_site_23340 DeepMRMD:1;iRNA_m5C:0.999536714333197 23341 chr12 109604769 109604769 1 + C T GBM 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCACATGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG < 41bp 1 0.538423168062154 1 0.726835191249847 experiment 0.923153663875691 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604769 nonsynonymous SNV 0.972 3 6 hm5C_associated_SNPs_22414 0 0 1 0 1 Nucleus 1 0.500231643921582 0.546329617500306 0.999536712156835 hm5C_site_23341 DeepMRMD:0.546329617500306;iRNA_m5C:0.999536712156835 23342 chr19 14150321 14150321 1 + C T GBM 14150320 + 14150300 14150340 41 CCCCGCCTCTCTCCTCACAGCCGTTCCAACAAAACCCAGAC CCCCGCCTCTCTCCTCACAGCTGTTCCAACAAAACCCAGAC < 41bp 1 0.158439111911224 1 0.270017027854919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IL27RA ENSG00000104998 CDS Human protein_coding chr19:14150320 chr19:14150321 nonsynonymous SNV 0.033 2 22 hm5C_associated_SNPs_22415 0 0 0 0 1 chromatin 1 0.500231643921128 1 0.999536712157744 hm5C_site_23342 DeepMRMD:1;iRNA_m5C:0.999536712157744 23343 chrX 152915703 152915703 1 + G A GBM 152915709 + 152915689 152915729 41 GCGGCCTCCAACCCGCCCTCCTTCTTCACCACCCCCACCAG GCGGCCTCCAACCCACCCTCCTTCTTCACCACCCCCACCAG < 41bp 1 0.168355536970033 1 0.164737850427628 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152915709 chrX:152915703 synonymous SNV . 0 15 hm5C_associated_SNPs_22416 0 0 0 0 0 cytosol 1 0.500231666812435 1 0.99953666637513 hm5C_site_23343 DeepMRMD:1;iRNA_m5C:0.99953666637513 23344 chr19 11559895 11559895 1 + T C GBM 11559894 + 11559874 11559914 41 CCCTGTGTCTCTCACAGCACCTGGGGCTCATGGATTGGCCC CCCTGTGTCTCTCACAGCACCCGGGGCTCATGGATTGGCCC < 41bp 1 0.524703646265194 1 0.818843245506287 experiment 0.950592707469612 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559894 chr19:11559895 nonsynonymous SNV 0.979 3 22 hm5C_associated_SNPs_22417 0 0 1 0 2 Nucleus 1 0.500231643868754 0.362313508987426 0.999536712262493 hm5C_site_23344 DeepMRMD:0.362313508987426;iRNA_m5C:0.999536712262493 23345 chr1 29069013 29069013 1 + G A GBM 29069000 + 29068980 29069020 41 CTCCTATTCTTTGGGTGAAGCTGCTTGGTCTACGGGGGGTG CTCCTATTCTTTGGGTGAAGCTGCTTGGTCTACAGGGGGTG < 41bp 1 0.462592745903147 1 0.263247966766357 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069000 chr1:29069013 synonymous SNV . 0 34 hm5C_associated_SNPs_22418 0 0 1 0 1 Cytosol 1 0.500231643921086 1 0.999536712157827 hm5C_site_23345 DeepMRMD:1;iRNA_m5C:0.999536712157827 23346 chr1 228362953 228362953 1 + C A GBM 228362945 + 228362925 228362965 41 TTGGCCAGGAGCTGACGGCCCGCACCCACCACATGGGCGTC TTGGCCAGGAGCTGACGGCCCGCACCCAACACATGGGCGTC < 41bp 1 0.325768703602513 1 0.0601757168769836 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IBA57 ENSG00000181873 CDS Human protein_coding chr1:228362945 chr1:228362953 nonsynonymous SNV 0.987 1 29 hm5C_associated_SNPs_22419 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23346 DeepMRMD:1;iRNA_m5C:0.999536712157815 23347 chr9 130569495 130569495 1 + G T GBM 130569510 + 130569490 130569530 41 TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA TGGCATCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA < 41bp 1 0.0873673089599582 1 0.0568917989730835 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130569510 chr9:130569495 nonsynonymous SNV 0.968 0 6 hm5C_associated_SNPs_22420 0 0 1 0 2 Cytosol 1 0.500231761768344 1 0.999536476463313 hm5C_site_23347 DeepMRMD:1;iRNA_m5C:0.999536476463313 23348 chr22 32881138 32881138 1 + C T GBM 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGTGAGGGCAGCTCCGCTACTCTCACCTGTGTGC < 41bp 1 0.46377989017603 1 0.123495310544968 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881138 synonymous SNV . 0 10 hm5C_associated_SNPs_22421 0 0 1 0 2 chromatin 1 0.500231643843166 1 0.999536712313668 hm5C_site_23348 DeepMRMD:1;iRNA_m5C:0.999536712313668 23349 chr7 100466151 100466151 1 + C T GBM 100466155 + 100466135 100466175 41 CCTCCTGCCTACCGCACGGGCTCCCTGAAGCCAAATCCAGC CCTCCTGCCTACCGCATGGGCTCCCTGAAGCCAAATCCAGC < 41bp 1 0.229651244735571 1 0.02152019739151 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466155 chr7:100466151 nonsynonymous SNV 0.002 0 17 hm5C_associated_SNPs_22422 0 0 0 0 1 Ribosome 1 0.500231643921075 1 0.99953671215785 hm5C_site_23349 DeepMRMD:1;iRNA_m5C:0.99953671215785 23350 chr5 53815370 53815370 1 + G T GBM 53815367 + 53815347 53815387 41 TAGCGCTGTATCAGGGGCATCTGGCTAACTTCCCGGACATC TAGCGCTGTATCAGGGGCATCTGTCTAACTTCCCGGACATC < 41bp 1 0.107631797969547 1 0.0899492800235748 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815367 chr5:53815370 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_22423 0 0 1 0 1 chromatin 1 0.500231643921137 1 0.999536712157727 hm5C_site_23350 DeepMRMD:1;iRNA_m5C:0.999536712157727 23351 chr1 27105938 27105938 1 + A G GBM 27105939 + 27105919 27105959 41 TGGCGGATTGGTGGGGGGGACACCACTGAGCATATCCAGAC TGGCGGATTGGTGGGGGGGGCACCACTGAGCATATCCAGAC < 41bp 1 0.673655430508104 1 0.366248369216919 experiment 0.652689138983791 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27105939 chr1:27105938 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_22424 0 0 1 0 0 Nucleus 1 0.500231643540703 1 0.999536712918593 hm5C_site_23351 DeepMRMD:1;iRNA_m5C:0.999536712918593 23352 chr6 74475666 74475666 1 + G A GBM 74475665 + 74475645 74475685 41 ACCATTAGGTGAAGGTAACTCGTGCTGATGGCAACCAACTG ACCATTAGGTGAAGGTAACTCATGCTGATGGCAACCAACTG < 41bp 1 0.245638151801101 1 0.415159374475479 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74475665 chr6:74475666 nonsynonymous SNV 0.963 0 22 hm5C_associated_SNPs_22425 0 0 0 0 1 Ribosome 1 0.500232088951631 1 0.999535822096738 hm5C_site_23352 DeepMRMD:1;iRNA_m5C:0.999535822096738 23353 chr16 56970708 56970708 1 + C T GBM 56970702 + 56970682 56970722 41 GGAAGTTCTTCGGAACCTTTCTTCCCCTGGATGGGAAAACA GGAAGTTCTTCGGAACCTTTCTTCCCTTGGATGGGAAAACA < 41bp 1 0.278900664623936 1 0.32782781124115 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56970702 chr16:56970708 nonsynonymous SNV 0.969 0 27 hm5C_associated_SNPs_22426 0 0 1 0 1 Ribosome 1 0.500231643920567 1 0.999536712158865 hm5C_site_23353 DeepMRMD:1;iRNA_m5C:0.999536712158865 23354 chr1 32502583 32502583 1 + C A GBM 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTAGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT < 41bp 1 0.613940531029756 1 0.397175878286362 experiment 0.772118937940489 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502583 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_22428 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23354 DeepMRMD:1;iRNA_m5C:0.999536712157815 23355 chrX 21874899 21874899 1 + C T GBM 21874912 + 21874892 21874932 41 TAGGCAACGACTTGGAGGACCAGTTGGCCCTCCCGGATAGC TAGGCAATGACTTGGAGGACCAGTTGGCCCTCCCGGATAGC < 41bp 1 0.19138977747055 1 0.16290557384491 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YY2 ENSG00000230797 CDS Human protein_coding chrX:21874912 chrX:21874899 synonymous SNV . 0 8 hm5C_associated_SNPs_22429 0 0 1 0 0 exosome 1 0.500231370165198 1 0.999537259669603 hm5C_site_23355 DeepMRMD:1;iRNA_m5C:0.999537259669603 23356 chr5 162932707 162932707 1 + G A GBM 162932723 + 162932703 162932743 41 GGGAGAAAGAGCTCTCTATACACTTTGTTCCCGGGAGCTGT GGGAAAAAGAGCTCTCTATACACTTTGTTCCCGGGAGCTGT < 41bp 1 0.475371195883393 1 0.0518599450588226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAT2B ENSG00000038274 CDS Human protein_coding chr5:162932723 chr5:162932707 synonymous SNV . 0 5 hm5C_associated_SNPs_22430 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23356 DeepMRMD:1;iRNA_m5C:0.999536712157815 23357 chr17 30692370 30692370 1 + G A GBM 30692372 + 30692352 30692392 41 TGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT TGCCCCCACCTGTTCCACATCCTGGAATTCCTCCAATGACT < 41bp 1 0.295223463831812 1 0.435990959405899 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692372 chr17:30692370 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_22431 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23357 DeepMRMD:1;iRNA_m5C:0.999536712157815 23358 chr17 30692370 30692370 1 + G A GBM 30692381 + 30692361 30692401 41 CTGTTCCACGTCCTGGAATTCCTCCAATGACTCAAGCACAG CTGTTCCACATCCTGGAATTCCTCCAATGACTCAAGCACAG < 41bp 1 0.103715312152896 1 0.235163450241089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692381 chr17:30692370 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_22432 0 0 1 0 1 Ribosome 1 0.500231643922012 1 0.999536712155976 hm5C_site_23358 DeepMRMD:1;iRNA_m5C:0.999536712155976 23359 chr11 34129864 34129864 1 + A C GBM 34129866 + 34129846 34129886 41 TCTTTGTTGTAGTTGGGGATCGAGGAAAAGATCAGGTATGG TCTTTGTTGTAGTTGGGGCTCGAGGAAAAGATCAGGTATGG < 41bp 1 0.629734334641259 1 0.860260426998138 experiment 0.740531330717481 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129866 chr11:34129864 nonsynonymous SNV 0.820 4 19 hm5C_associated_SNPs_22433 0 0 1 0 1 chromatin 1 0.500231643921092 0.279479146003724 0.999536712157815 hm5C_site_23359 DeepMRMD:0.279479146003724;iRNA_m5C:0.999536712157815 23360 chr7 143080299 143080299 1 + T C GBM 143080316 + 143080296 143080336 41 CTTTCTGCTGGCACAGGCTCCCCTCAACCTCCCAGCTTCAC CTTCCTGCTGGCACAGGCTCCCCTCAACCTCCCAGCTTCAC < 41bp 1 0.0298875989766206 1 0.0640552341938019 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZYX ENSG00000159840 CDS Human protein_coding chr7:143080316 chr7:143080299 nonsynonymous SNV 0.021 1 4 hm5C_associated_SNPs_22434 0 0 1 0 0 Ribosome 1 0.500231643921958 1 0.999536712156083 hm5C_site_23360 DeepMRMD:1;iRNA_m5C:0.999536712156083 23361 chr17 41477126 41477126 1 + C T GBM 41477110 + 41477090 41477130 41 CTTAGCTCACTATGGGGAACCACTTGACTGAGATGGCGCCC CTTAGCTCACTATGGGGAACCACTTGACTGAGATGGTGCCC < 41bp 1 0.362399461558241 1 0.166762977838516 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ARL4D ENSG00000175906 CDS Human protein_coding chr17:41477110 chr17:41477126 nonsynonymous SNV 0.954 1 37 hm5C_associated_SNPs_22435 0 0 0 0 1 Cytosol 1 0.500231643921027 1 0.999536712157946 hm5C_site_23361 DeepMRMD:1;iRNA_m5C:0.999536712157946 23362 chr4 159627828 159627828 1 + G A GBM 159627823 + 159627803 159627843 41 GCCAGCCAAGGATTGCACACCTATTGAGTATCCAAAACCCG GCCAGCCAAGGATTGCACACCTATTAAGTATCCAAAACCCG < 41bp 1 0.112382038966547 1 0.0887579321861267 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETFDH ENSG00000171503 CDS Human protein_coding chr4:159627823 chr4:159627828 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_22436 0 0 1 0 1 Ribosome 1 0.500231643921173 1 0.999536712157653 hm5C_site_23362 DeepMRMD:1;iRNA_m5C:0.999536712157653 23363 chr19 40711067 40711067 1 + G T GBM 40711074 + 40711054 40711094 41 CGGCCAGATTTCGGTAGCATCTTGAAGCGGCTTGAAGTCAT CGGCCAGATTTCGTTAGCATCTTGAAGCGGCTTGAAGTCAT < 41bp 1 0.47329641697257 1 0.7316575050354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40711074 chr19:40711067 nonsynonymous SNV 0.880 1 14 hm5C_associated_SNPs_22437 0 0 0 0 1 Endoplasmic reticulum 1 0.500234602607061 0.5366849899292 0.999530794785878 hm5C_site_23363 DeepMRMD:0.5366849899292;iRNA_m5C:0.999530794785878 23364 chr7 104750925 104750925 1 + G A GBM 104750943 + 104750923 104750963 41 GGGGGAGAATCACCATGTGTCTCATGTTCACCGAGTCATGT GGAGGAGAATCACCATGTGTCTCATGTTCACCGAGTCATGT < 41bp 1 0.302045996375592 1 0.0169373750686646 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2E ENSG00000005483 CDS Human protein_coding chr7:104750943 chr7:104750925 synonymous SNV . 0 3 hm5C_associated_SNPs_22438 0 0 1 0 1 Cytosol 1 0.500214623820342 1 0.999570752359316 hm5C_site_23364 DeepMRMD:1;iRNA_m5C:0.999570752359316 23365 chr18 13056646 13056646 1 + G A GBM 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTCTGTTAGTACAAACTGTGGAATTGAACCAT < 41bp 1 0.133516349502371 1 0.248621881008148 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056646 nonsynonymous SNV 0.001 0 17 hm5C_associated_SNPs_22439 0 0 1 0 1 Nucleus 1 0.500231673281054 1 0.999536653437892 hm5C_site_23365 DeepMRMD:1;iRNA_m5C:0.999536653437892 23366 chr18 13056646 13056646 1 + G A GBM 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTCTGTTAGTACAAACTGTGGAATTGAACCATGGGA < 41bp 1 0.249993342135894 1 0.12364250421524 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056646 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_22440 0 0 1 0 1 Nucleus 1 0.500231643938937 1 0.999536712122127 hm5C_site_23366 DeepMRMD:1;iRNA_m5C:0.999536712122127 23367 chr1 47838725 47838725 1 + C T GBM 47838724 + 47838704 47838744 41 CCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATG CCTTCAAGGATGGAACAAGACTATGGATGGGAAGGCAGATG < 41bp 1 0.670887813908961 1 0.0541785061359406 experiment 0.658224372182077 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838724 chr1:47838725 synonymous SNV . 0 22 hm5C_associated_SNPs_22441 0 0 1 2 2 chromatin 1 0.500231643920732 1 0.999536712158537 hm5C_site_23367 DeepMRMD:1;iRNA_m5C:0.999536712158537 23368 chr17 40651020 40651020 1 + C T GBM 40651016 + 40650996 40651036 41 ATGTCTGTTATCCTTGGTATCATCCATATGCTGTTTGGAGT ATGTCTGTTATCCTTGGTATCATCTATATGCTGTTTGGAGT < 41bp 1 0.185339091367201 1 0.130621463060379 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40651016 chr17:40651020 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_22442 0 0 1 0 2 Endoplasmic reticulum 1 0.500233225712637 1 0.999533548574726 hm5C_site_23368 DeepMRMD:1;iRNA_m5C:0.999533548574726 23369 chr17 40651020 40651020 1 + C T GBM 40651019 + 40650999 40651039 41 TCTGTTATCCTTGGTATCATCCATATGCTGTTTGGAGTCAG TCTGTTATCCTTGGTATCATCTATATGCTGTTTGGAGTCAG < 41bp 1 0.612503060836252 1 0.63115793466568 experiment 0.774993878327496 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40651019 chr17:40651020 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_22443 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.73768413066864 0.999536712157815 hm5C_site_23369 DeepMRMD:0.73768413066864;iRNA_m5C:0.999536712157815 23370 chr17 40651020 40651020 1 + C T GBM 40651026 + 40651006 40651046 41 TCCTTGGTATCATCCATATGCTGTTTGGAGTCAGCCTGAGT TCCTTGGTATCATCTATATGCTGTTTGGAGTCAGCCTGAGT < 41bp 1 0.154027012036562 1 0.0653258562088013 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40651026 chr17:40651020 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_22444 0 0 1 0 2 Endoplasmic reticulum 1 0.500230444842894 1 0.999539110314213 hm5C_site_23370 DeepMRMD:1;iRNA_m5C:0.999539110314213 23371 chr2 217366127 217366127 1 + G A GBM 217366129 + 217366109 217366149 41 GGAGTTGAAAGACCAGTAGACGCTCCTCTACTCTTTGAGAC GGAGTTGAAAGACCAGTAAACGCTCCTCTACTCTTTGAGAC < 41bp 1 0.520091121870764 1 0.206044852733612 experiment 0.959817756258472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366129 chr2:217366127 synonymous SNV . 0 19 hm5C_associated_SNPs_22445 0 0 1 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23371 DeepMRMD:1;iRNA_m5C:0.999536712157815 23372 chr7 66262470 66262470 1 + T C GBM 66262475 + 66262455 66262495 41 TGATGAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGT TGATGAGAAGAAAGACCTTGCCATTCAAAAGAGAATCAGGT < 41bp 1 0.014397987543916 1 0.0852509140968323 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66262475 chr7:66262470 synonymous SNV . 0 16 hm5C_associated_SNPs_22447 0 0 0 0 1 Cytosol 1 0.50024956022465 1 0.9995008795507 hm5C_site_23372 DeepMRMD:1;iRNA_m5C:0.9995008795507 23373 chr7 66262470 66262470 1 + T C GBM 66262476 + 66262456 66262496 41 GATGAGAAGAAAGATCTTGCCATTCAAAAGAGAATCAGGTA GATGAGAAGAAAGACCTTGCCATTCAAAAGAGAATCAGGTA < 41bp 1 0.0526250011934538 1 0.196610301733017 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66262476 chr7:66262470 synonymous SNV . 0 15 hm5C_associated_SNPs_22448 0 0 0 0 1 Cytosol 1 0.500231458686107 1 0.999537082627785 hm5C_site_23373 DeepMRMD:1;iRNA_m5C:0.999537082627785 23374 chr1 183495733 183495733 1 + A T GBM 183495750 + 183495730 183495770 41 GTTATTACAAGAACTGTGTACAGTATTTAATGTAGATTTAC GTTTTTACAAGAACTGTGTACAGTATTTAATGTAGATTTAC < 41bp 1 0.251470363188592 1 0.0394307076931 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183495750 chr1:183495733 nonsynonymous SNV 0.993 4 4 hm5C_associated_SNPs_22449 0 0 1 0 1 Cytosol 1 0.500232870282386 1 0.999534259435228 hm5C_site_23374 DeepMRMD:1;iRNA_m5C:0.999534259435228 23375 chr19 18966740 18966740 1 + G A GBM 18966735 + 18966715 18966755 41 TGCCCCAATGGTGTTGCAGGCCGGTGCTGGTGTGTGCTCCG TGCCCCAATGGTGTTGCAGGCCGGTACTGGTGTGTGCTCCG < 41bp 1 0.254782280204397 1 0.238762766122818 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966735 chr19:18966740 synonymous SNV . 0 26 hm5C_associated_SNPs_22450 0 0 1 0 1 Nucleus 1 0.500231643947876 1 0.999536712104248 hm5C_site_23375 DeepMRMD:1;iRNA_m5C:0.999536712104248 23376 chr19 757476 757476 1 + G A GBM 757482 + 757462 757502 41 CCCCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGG CCCCGGCCCACCTCAGTCCACGCCCCTGGAGGAGAACGTGG < 41bp 1 0.321834064164622 1 0.0410431921482086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757482 chr19:757476 nonsynonymous SNV 0.002 0 15 hm5C_associated_SNPs_22452 0 0 0 0 0 nucleus 1 0.500231643920237 1 0.999536712159526 hm5C_site_23376 DeepMRMD:1;iRNA_m5C:0.999536712159526 23377 chr19 757476 757476 1 + G A GBM 757484 + 757464 757504 41 CCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTT CCGGCCCACCTCAGTCCACGCCCCTGGAGGAGAACGTGGTT < 41bp 1 0.182396086396039 1 0.125939697027206 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757484 chr19:757476 nonsynonymous SNV 0.002 0 13 hm5C_associated_SNPs_22453 0 0 0 0 0 nucleus 1 0.500231437465128 1 0.999537125069744 hm5C_site_23377 DeepMRMD:1;iRNA_m5C:0.999537125069744 23378 chr19 757476 757476 1 + G A GBM 757485 + 757465 757505 41 CGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTG CGGCCCACCTCAGTCCACGCCCCTGGAGGAGAACGTGGTTG < 41bp 1 0.135413555566237 1 0.472984343767166 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757485 chr19:757476 nonsynonymous SNV 0.002 0 12 hm5C_associated_SNPs_22454 0 0 0 0 0 nucleus 1 0.500231390306406 1 0.999537219387189 hm5C_site_23378 DeepMRMD:1;iRNA_m5C:0.999537219387189 23379 chr19 757476 757476 1 + G A GBM 757486 + 757466 757506 41 GGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTGA GGCCCACCTCAGTCCACGCCCCTGGAGGAGAACGTGGTTGA < 41bp 1 0.257743201612179 1 0.50458961725235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757486 chr19:757476 nonsynonymous SNV 0.002 0 11 hm5C_associated_SNPs_22455 0 0 0 0 0 nucleus 1 0.500231643920955 0.9908207654953 0.999536712158091 hm5C_site_23379 DeepMRMD:0.9908207654953;iRNA_m5C:0.999536712158091 23380 chrX 152915705 152915705 1 + C G GBM 152915709 + 152915689 152915729 41 GCGGCCTCCAACCCGCCCTCCTTCTTCACCACCCCCACCAG GCGGCCTCCAACCCGCGCTCCTTCTTCACCACCCCCACCAG < 41bp 1 0.164873906281917 1 0.132862567901611 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152915709 chrX:152915705 nonsynonymous SNV 0.871 0 17 hm5C_associated_SNPs_22456 0 0 0 0 0 cytosol 1 0.500231633360896 1 0.999536733278207 hm5C_site_23380 DeepMRMD:1;iRNA_m5C:0.999536733278207 23381 chr16 22337428 22337428 1 + C T GBM 22337437 + 22337417 22337457 41 CTGAAGGCCTTCGTGGAGGCCACCTTTCAGAGACAGTTTGT CTGAAGGCCTTTGTGGAGGCCACCTTTCAGAGACAGTTTGT < 41bp 1 0.31618878212045 1 0.050140380859375 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337437 chr16:22337428 synonymous SNV . 0 12 hm5C_associated_SNPs_22457 0 0 1 0 0 Ribosome 1 0.500231643842679 1 0.999536712314641 hm5C_site_23381 DeepMRMD:1;iRNA_m5C:0.999536712314641 23382 chr16 67572621 67572621 1 + G A GBM 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACG < 41bp 1 0.0677152702394382 1 0.183292269706726 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572621 nonsynonymous SNV 0.020 0 39 hm5C_associated_SNPs_22458 0 0 0 0 2 unknown 1 0.500231660341253 1 0.999536679317495 hm5C_site_23382 DeepMRMD:1;iRNA_m5C:0.999536679317495 23383 chr16 67572621 67572621 1 + G A GBM 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACGC < 41bp 1 0.532884209883628 1 0.383412688970566 experiment 0.934231580232745 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572621 nonsynonymous SNV 0.020 0 38 hm5C_associated_SNPs_22459 0 0 0 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23383 DeepMRMD:1;iRNA_m5C:0.999536712157815 23384 chr16 67572621 67572621 1 + G A GBM 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACGCT < 41bp 1 0.136267640506176 1 0.257583737373352 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572621 nonsynonymous SNV 0.020 0 37 hm5C_associated_SNPs_22460 0 0 0 0 2 unknown 1 0.500231644923543 1 0.999536710152914 hm5C_site_23384 DeepMRMD:1;iRNA_m5C:0.999536710152914 23385 chr16 67572621 67572621 1 + G A GBM 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCACGCTC < 41bp 1 0.453722351557152 1 0.331787586212158 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572621 nonsynonymous SNV 0.020 0 36 hm5C_associated_SNPs_22461 0 0 0 0 2 unknown 1 0.500231643921097 1 0.999536712157806 hm5C_site_23385 DeepMRMD:1;iRNA_m5C:0.999536712157806 23386 chr17 7476181 7476181 1 + C T GBM 7476180 + 7476160 7476200 41 ATGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA ATGTCTGCGAGCCAGGATTCCTGGTAAGAAAGGCATTTGCA < 41bp 1 0.595918914463193 1 0.118013113737106 experiment 0.808162171073613 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476180 chr17:7476181 stopgain 0.996 0 22 hm5C_associated_SNPs_22463 0 0 1 0 1 Cytosol 1 0.500229661278303 1 0.999540677443395 hm5C_site_23386 DeepMRMD:1;iRNA_m5C:0.999540677443395 23387 chr19 2850673 2850673 1 + A G GBM 2850663 + 2850643 2850683 41 TGGATTCTGCTCAGAGGGACCTCTACAGAGATGTGATGCTG TGGATTCTGCTCAGAGGGACCTCTACAGAGGTGTGATGCTG < 41bp 1 0.518106859103414 1 0.896350383758545 experiment 0.963786281793172 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF555 ENSG00000186300 CDS Human protein_coding chr19:2850663 chr19:2850673 nonsynonymous SNV 0.973 1 31 hm5C_associated_SNPs_22464 0 0 0 0 2 Cytosol 1 0.500231470487157 0.20729923248291 0.999537059025685 hm5C_site_23387 DeepMRMD:0.20729923248291;iRNA_m5C:0.999537059025685 23388 chr1 54562116 54562116 1 + C T GBM 54562129 + 54562109 54562149 41 TGCCAGTCGGCACGTTTGTACAGACCCACAAAAAGTGACCT TGCCAGTTGGCACGTTTGTACAGACCCACAAAAAGTGACCT < 41bp 1 0.382458380982314 1 0.442144483327866 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCEANC2 ENSG00000116205 CDS Human protein_coding chr1:54562129 chr1:54562116 synonymous SNV . 0 8 hm5C_associated_SNPs_22465 0 0 0 0 0 chromatin 1 0.500231643863815 1 0.99953671227237 hm5C_site_23388 DeepMRMD:1;iRNA_m5C:0.99953671227237 23389 chr5 53815350 53815350 1 + C T GBM 53815367 + 53815347 53815387 41 TAGCGCTGTATCAGGGGCATCTGGCTAACTTCCCGGACATC TAGTGCTGTATCAGGGGCATCTGGCTAACTTCCCGGACATC < 41bp 1 0.37080312017677 1 0.340247392654419 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815367 chr5:53815350 nonsynonymous SNV 0.996 2 4 hm5C_associated_SNPs_22466 0 0 1 0 1 chromatin 1 0.500231643957464 1 0.999536712085073 hm5C_site_23389 DeepMRMD:1;iRNA_m5C:0.999536712085073 23390 chr6 27101047 27101047 1 + T C GBM 27101032 + 27101012 27101052 41 GGTGCTGGAGTACCTGACCGCCGAGATCCTGGAACTGGCGG GGTGCTGGAGTACCTGACCGCCGAGATCCTGGAACCGGCGG < 41bp 1 0.65527127155817 1 0.763683080673218 experiment 0.689457456883659 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101032 chr6:27101047 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_22469 0 0 1 0 0 Ribosome 1 0.500231643921092 0.472633838653564 0.999536712157815 hm5C_site_23390 DeepMRMD:0.472633838653564;iRNA_m5C:0.999536712157815 23391 chr6 27101047 27101047 1 + T C GBM 27101054 + 27101034 27101074 41 GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACAA GAGATCCTGGAACCGGCGGGCAACGCGGCCCGCGACAACAA < 41bp 1 0.576613756629546 1 0.534961521625519 experiment 0.846772486740907 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101054 chr6:27101047 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_22471 0 0 1 0 0 Ribosome 1 0.500231643921097 0.930076956748962 0.999536712157806 hm5C_site_23391 DeepMRMD:0.930076956748962;iRNA_m5C:0.999536712157806 23392 chr6 27101047 27101047 1 + T C GBM 27101062 + 27101042 27101082 41 GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC GGAACCGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC < 41bp 1 0.335294615254433 1 0.233804672956467 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101062 chr6:27101047 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_22472 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_23392 DeepMRMD:1;iRNA_m5C:0.999536712157813 23393 chr6 27101047 27101047 1 + T C GBM 27101063 + 27101043 27101083 41 GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG GAACCGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG < 41bp 1 0.43370912004398 1 0.163655251264572 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101063 chr6:27101047 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_22473 0 0 1 0 0 Ribosome 1 0.50023164400729 1 0.999536711985421 hm5C_site_23393 DeepMRMD:1;iRNA_m5C:0.999536711985421 23394 chr4 38055938 38055938 1 + G A GBM 38055933 + 38055913 38055953 41 AGTAGCCACCCCGCAGAAGGCGTGCGATTCTTCCAGCAGAT AGTAGCCACCCCGCAGAAGGCGTGCAATTCTTCCAGCAGAT < 41bp 1 0.321235516846517 1 0.489081352949142 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38055933 chr4:38055938 nonsynonymous SNV 0.028 1 26 hm5C_associated_SNPs_22474 0 0 0 0 1 Nucleus 1 0.5002316439211 1 0.999536712157799 hm5C_site_23394 DeepMRMD:1;iRNA_m5C:0.999536712157799 23395 chr1 26885383 26885383 1 + C T GBM 26885380 + 26885360 26885400 41 GCCACCGGCCTGATGGAAGACGACGGCAAGCCTCGTGCCCC GCCACCGGCCTGATGGAAGACGATGGCAAGCCTCGTGCCCC < 41bp 1 0.574701402177707 1 0.512524247169495 experiment 0.850597195644586 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885380 chr1:26885383 synonymous SNV . 0 24 hm5C_associated_SNPs_22475 0 0 1 0 2 Ribosome 1 0.500231643917818 0.97495150566101 0.999536712164363 hm5C_site_23395 DeepMRMD:0.97495150566101;iRNA_m5C:0.999536712164363 23396 chr7 129093096 129093096 1 + C T GBM 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTCAGAGGTTGATGTGCTACACTGGTCCAGGTACAACTGC < 41bp 1 0.629622326092623 1 0.115285933017731 experiment 0.740755347814753 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093096 synonymous SNV . 0 11 hm5C_associated_SNPs_22476 0 0 1 0 2 Nucleus 1 0.500231636879321 1 0.999536726241358 hm5C_site_23396 DeepMRMD:1;iRNA_m5C:0.999536726241358 23397 chr11 722150 722150 1 + C T GBM 722139 + 722119 722159 41 CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTCGGGCCTCTG CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTTGGGCCTCTG < 41bp 1 0.125525176661353 1 0.0484163761138916 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722139 chr11:722150 synonymous SNV . 0 32 hm5C_associated_SNPs_22477 0 0 1 0 2 Cytosol 1 0.500231643921011 1 0.999536712157978 hm5C_site_23397 DeepMRMD:1;iRNA_m5C:0.999536712157978 23398 chr1 151006637 151006637 1 + C A GBM 151006621 + 151006601 151006641 41 AGTGCCCTCTAGATCAGGGGCTGCCTAAACTCTCTGCTGAG AGTGCCCTCTAGATCAGGGGCTGCCTAAACTCTCTGATGAG < 41bp 1 0.29869910328791 1 0.134575694799423 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:151006621 chr1:151006637 nonsynonymous SNV 0.058 4 37 hm5C_associated_SNPs_22479 0 0 1 0 0 chromatin 1 0.500231643921091 1 0.999536712157817 hm5C_site_23398 DeepMRMD:1;iRNA_m5C:0.999536712157817 23399 chr8 22473344 22473344 1 + C T GBM 22473327 + 22473307 22473347 41 TCCCAGAGGCCCCTCCACCCCCCCTAGAACCTGCTGTCATC TCCCAGAGGCCCCTCCACCCCCCCTAGAACCTGCTGTTATC < 41bp 1 0.256285755110328 1 0.2682945728302 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22473327 chr8:22473344 synonymous SNV . 0 38 hm5C_associated_SNPs_22480 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23399 DeepMRMD:1;iRNA_m5C:0.999536712157815 23400 chr20 47896896 47896896 1 + C T GBM 47896878 + 47896858 47896898 41 TGGCATATATGATGACTTAGCTTTTTTCCCCGACAGATCGA TGGCATATATGATGACTTAGCTTTTTTCCCCGACAGATTGA < 41bp 1 0.0557314694934637 1 0.109531372785568 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896878 chr20:47896896 . . 0 39 hm5C_associated_SNPs_22481 0 0 1 0 0 unknown 1 0.500231643779636 1 0.999536712440728 hm5C_site_23400 DeepMRMD:1;iRNA_m5C:0.999536712440728 23401 chr20 47896896 47896896 1 + C T GBM 47896885 + 47896865 47896905 41 TATGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTT TATGATGACTTAGCTTTTTTCCCCGACAGATTGACTATGTT < 41bp 1 0.178896499904066 1 0.0861063599586487 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896885 chr20:47896896 . . 0 32 hm5C_associated_SNPs_22482 0 0 1 0 0 unknown 1 0.500231643921525 1 0.99953671215695 hm5C_site_23401 DeepMRMD:1;iRNA_m5C:0.99953671215695 23402 chr20 47896896 47896896 1 + C T GBM 47896886 + 47896866 47896906 41 ATGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTG ATGATGACTTAGCTTTTTTCCCCGACAGATTGACTATGTTG < 41bp 1 0.407468638722796 1 0.209396302700043 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896886 chr20:47896896 . . 0 31 hm5C_associated_SNPs_22483 0 0 1 0 0 unknown 1 0.500231644649948 1 0.999536710700105 hm5C_site_23402 DeepMRMD:1;iRNA_m5C:0.999536710700105 23403 chr20 47896896 47896896 1 + C T GBM 47896887 + 47896867 47896907 41 TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGA TGATGACTTAGCTTTTTTCCCCGACAGATTGACTATGTTGA < 41bp 1 0.0538824581480011 1 0.103777945041656 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896887 chr20:47896896 . . 0 30 hm5C_associated_SNPs_22484 0 0 1 0 0 unknown 1 0.500231643921097 1 0.999536712157806 hm5C_site_23403 DeepMRMD:1;iRNA_m5C:0.999536712157806 23404 chr20 47896896 47896896 1 + C T GBM 47896899 + 47896879 47896919 41 TTTTTTCCCCGACAGATCGACTATGTTGATCTAACTTTTCT TTTTTTCCCCGACAGATTGACTATGTTGATCTAACTTTTCT < 41bp 1 0.168118625534523 1 0.091402143239975 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896899 chr20:47896896 . . 0 18 hm5C_associated_SNPs_22485 0 0 1 0 0 unknown 1 0.500231643932502 1 0.999536712134995 hm5C_site_23404 DeepMRMD:1;iRNA_m5C:0.999536712134995 23405 chr20 47896896 47896896 1 + C T GBM 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATTGACTATGTTGATCTAACTTTTCTAAGCCAGTTT < 41bp 1 0.107747448460606 1 0.0645903944969177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896896 . . 0 8 hm5C_associated_SNPs_22486 0 0 1 0 0 unknown 1 0.50023163806521 1 0.99953672386958 hm5C_site_23405 DeepMRMD:1;iRNA_m5C:0.99953672386958 23406 chrX 73046529 73046529 1 + C T GBM 73046526 - 73046506 73046546 41 TGGAGGCCCATGACCCAGAACCCAGGAAGGATAGAAGCTTG TGGAGGCCCATGACCCAAAACCCAGGAAGGATAGAAGCTTG < 41bp 1 0.259481290770329 1 0.297316372394562 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046526 chrX:73046529 . . 0 18 hm5C_associated_SNPs_22487 0 0 1 2 0 unknown 1 0.500231643921086 1 0.999536712157829 hm5C_site_23406 DeepMRMD:1;iRNA_m5C:0.999536712157829 23407 chrX 73046529 73046529 1 + C T GBM 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA GGAATCTGGAGGCCCATGACCCAAAACCCAGGAAGGATAGA < 41bp 1 0.137364137970555 1 0.203184336423874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046529 . . 0 24 hm5C_associated_SNPs_22488 0 0 1 2 0 unknown 1 0.500231643164535 1 0.99953671367093 hm5C_site_23407 DeepMRMD:1;iRNA_m5C:0.99953671367093 23408 chrX 73046529 73046529 1 + C T GBM 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CGGAATCTGGAGGCCCATGACCCAAAACCCAGGAAGGATAG < 41bp 1 0.35908009177258 1 0.361499220132828 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046529 . . 0 25 hm5C_associated_SNPs_22489 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23408 DeepMRMD:1;iRNA_m5C:0.999536712157815 23409 chrX 73046529 73046529 1 + C T GBM 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCGGAATCTGGAGGCCCATGACCCAAAACCCAGGAA < 41bp 1 0.0834940281015657 1 0.204696625471115 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046529 . . 0 31 hm5C_associated_SNPs_22490 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23409 DeepMRMD:1;iRNA_m5C:0.999536712157815 23410 chr11 2424076 2424076 1 + C T GBM 2424079 + 2424059 2424099 41 CCCTCACCCCCGTCAGGCCTCCTCCCAGCCACGGTGCAGCC CCCTCACCCCCGTCAGGTCTCCTCCCAGCCACGGTGCAGCC < 41bp 1 0.0667449141351794 1 0.0356303453445435 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSSC4 ENSG00000184281 CDS Human protein_coding chr11:2424079 chr11:2424076 synonymous SNV . 0 18 hm5C_associated_SNPs_22491 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23410 DeepMRMD:1;iRNA_m5C:0.999536712157815 23411 chr5 125820109 125820109 1 + A C GBM 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGCATCCCAAACAGTTCTGAATGTCTCCAAGG < 41bp 1 0.322108428886175 1 0.108068615198135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820109 nonsynonymous SNV 0.962 2 12 hm5C_associated_SNPs_22492 0 0 0 4 2 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_23411 DeepMRMD:1;iRNA_m5C:0.999536712157816 23412 chr6 43168195 43168195 1 + G T GBM 43168200 + 43168180 43168220 41 CTGGGCCAGATCGAAGACCACAGACGAACCCACCAACCCAT CTGGGCCAGATCGAATACCACAGACGAACCCACCAACCCAT < 41bp 1 0.253239297846094 1 0.244447410106659 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CUL9 ENSG00000112659 CDS Human protein_coding chr6:43168200 chr6:43168195 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_22493 0 0 0 0 1 chromatin 1 0.500231648677153 1 0.999536702645694 hm5C_site_23412 DeepMRMD:1;iRNA_m5C:0.999536702645694 23413 chr15 93486285 93486285 1 + G A GBM 93486284 + 93486264 93486304 41 AACTTCAAGAAAAAAGAGGACGAAATCAAACAATGGTATAT AACTTCAAGAAAAAAGAGGACAAAATCAAACAATGGTATAT < 41bp 1 0.161457254264217 1 0.263472974300385 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93486284 chr15:93486285 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_22494 0 0 1 3 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_23413 DeepMRMD:1;iRNA_m5C:0.999536712157815 23414 chr2 39008770 39008770 1 + G T GBM 39008755 + 39008735 39008775 41 GAAACTATGAATGAAGGGGACCATAGAGTGAGGGAGAAGCT GAAACTATGAATGAAGGGGACCATAGAGTGAGGGATAAGCT < 41bp 1 0.214715289732219 1 0.061363697052002 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008755 chr2:39008770 nonsynonymous SNV 0.922 0 36 hm5C_associated_SNPs_22495 0 0 1 0 0 Ribosome 1 0.500231643925332 1 0.999536712149336 hm5C_site_23414 DeepMRMD:1;iRNA_m5C:0.999536712149336 23415 chr12 57970134 57970134 1 + A C GBM 57970126 + 57970106 57970146 41 GCCCGGCTCCGGGACGAGATCAACGAGAAGCAGAAGACCAT GCCCGGCTCCGGGACGAGATCAACGAGACGCAGAAGACCAT < 41bp 1 0.636296786026059 1 0.661532461643219 experiment 0.727406427947882 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970126 chr12:57970134 nonsynonymous SNV 0.989 5 29 hm5C_associated_SNPs_22496 0 0 0 0 1 Cytosol 1 0.500231646509791 0.676935076713562 0.999536706980417 hm5C_site_23415 DeepMRMD:0.676935076713562;iRNA_m5C:0.999536706980417 23416 chr6 30545865 30545865 1 + C T GBM 30545872 + 30545852 30545892 41 GCAAAAAAAAAAGCGAGATACCCGAAAAGGCAGGCGGAAGA GCAAAAAAAAAAGTGAGATACCCGAAAAGGCAGGCGGAAGA < 41bp 1 0.445120876828568 1 0.499826908111572 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545872 chr6:30545865 stopgain 0.998 0 14 hm5C_associated_SNPs_22497 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920031 1 0.999536712159939 hm5C_site_23416 DeepMRMD:1;iRNA_m5C:0.999536712159939 23417 chr10 60549155 60549155 1 + C T GBM 60549151 + 60549131 60549171 41 TTTCAGTATCATTTAAACAGCGTTCCCGAATGTATGGTGCT TTTCAGTATCATTTAAACAGCGTTTCCGAATGTATGGTGCT < 41bp 1 0.0160440925323874 1 0.0241343677043915 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60549151 chr10:60549155 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_22498 0 0 1 0 1 nucleus 1 0.500231643921933 1 0.999536712156135 hm5C_site_23417 DeepMRMD:1;iRNA_m5C:0.999536712156135 23418 chr1 192779341 192779341 1 + C A GBM 192779358 + 192779338 192779378 41 TTCCTCTACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA TTCATCTACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA < 41bp 1 0.276921847809396 1 0.59360259771347 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS2 ENSG00000116741 CDS Human protein_coding chr1:192779358 chr1:192779341 synonymous SNV . 0 4 hm5C_associated_SNPs_22499 0 0 1 0 2 Nucleus 1 0.500231643921651 0.81279480457306 0.999536712156698 hm5C_site_23418 DeepMRMD:0.81279480457306;iRNA_m5C:0.999536712156698 23419 chr3 39104641 39104641 1 + G A GBM 39104645 + 39104625 39104665 41 CTTTTCACAGCCGGTCGAGACTCTATCATAAGAATATGGAG CTTTTCACAGCCGGTCAAGACTCTATCATAAGAATATGGAG < 41bp 1 0.613742096281343 1 0.888551235198975 experiment 0.772515807437314 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39104645 chr3:39104641 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_22500 0 0 1 0 1 Ribosome 1 0.500231643921072 0.22289752960205 0.999536712157856 hm5C_site_23419 DeepMRMD:0.22289752960205;iRNA_m5C:0.999536712157856 23420 chr3 14487247 14487247 1 + T G GBM 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTGATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT < 41bp 1 0.192582280105612 1 0.382622539997101 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487247 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_22501 0 0 1 1 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23420 DeepMRMD:1;iRNA_m5C:0.999536712157815 23421 chr7 40102501 40102501 1 + C G GBM 40102521 + 40102501 40102541 41 CCAGCCATTGATGTATGGAGCTGTGGGTAAGATAGCCTTAT GCAGCCATTGATGTATGGAGCTGTGGGTAAGATAGCCTTAT < 41bp 1 0.25573609675494 1 0.433857381343842 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102521 chr7:40102501 nonsynonymous SNV 0.991 3 1 hm5C_associated_SNPs_22502 0 0 1 0 2 Nucleus 1 0.50023164392112 1 0.999536712157761 hm5C_site_23421 DeepMRMD:1;iRNA_m5C:0.999536712157761 23422 chr22 23438412 23438412 1 + G A GBM 23438428 + 23438408 23438448 41 CTGCGCTCCCGGGACATGACCACGGGCATTGTGGAGAACAA CTGCACTCCCGGGACATGACCACGGGCATTGTGGAGAACAA < 41bp 1 0.663029780951176 1 0.781645178794861 experiment 0.673940438097649 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438428 chr22:23438412 nonsynonymous SNV 0.996 1 5 hm5C_associated_SNPs_22503 0 0 1 0 0 Ribosome 1 0.500231632520275 0.436709642410278 0.999536734959451 hm5C_site_23422 DeepMRMD:0.436709642410278;iRNA_m5C:0.999536734959451 23423 chr7 135291531 135291531 1 + C T GBM 135291549 + 135291529 135291569 41 TTCGTCATGAAACAAGAATCCACATCTTGAATCTTCTCATT TTTGTCATGAAACAAGAATCCACATCTTGAATCTTCTCATT < 41bp 1 0.24541440151174 1 0.0614909827709198 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291549 chr7:135291531 nonsynonymous SNV 0.770 2 3 hm5C_associated_SNPs_22504 0 0 1 0 1 Cytosol 1 0.500231643494022 1 0.999536713011957 hm5C_site_23423 DeepMRMD:1;iRNA_m5C:0.999536713011957 23424 chr6 117859970 117859970 1 + C T GBM 117859950 + 117859930 117859970 41 ACAGTAGCAACAACCACAAACCACGAGAGTGGCTGGAGATC ACAGTAGCAACAACCACAAACCACGAGAGTGGCTGGAGATT < 41bp 1 0.242778583238382 1 0.100281029939651 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117859950 chr6:117859970 synonymous SNV . 0 41 hm5C_associated_SNPs_22505 0 0 0 0 1 Endoplasmic reticulum 1 0.50023243835759 1 0.999535123284821 hm5C_site_23424 DeepMRMD:1;iRNA_m5C:0.999535123284821 23425 chrX 69354394 69354394 1 + G A GBM 69354374 + 69354354 69354394 41 CTCCTTTTTGCTCTTCCAGCCGAAATGAAGATTTGGAAGAG CTCCTTTTTGCTCTTCCAGCCGAAATGAAGATTTGGAAGAA < 41bp 1 0.555544318482541 1 0.847776055335999 experiment 0.888911363034917 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69354374 chrX:69354394 synonymous SNV . 0 41 hm5C_associated_SNPs_22506 0 0 1 0 1 Cytosol 1 0.500231478781803 0.304447889328002 0.999537042436394 hm5C_site_23425 DeepMRMD:0.304447889328002;iRNA_m5C:0.999537042436394 23426 chr12 105538170 105538170 1 + G T GBM 105538150 + 105538130 105538170 41 AAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAAG AAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAAT < 41bp 1 0.0428636073693348 1 0.121939361095428 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538150 chr12:105538170 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_22508 0 0 1 0 1 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_23426 DeepMRMD:1;iRNA_m5C:0.999536712157815 23427 chr10 1118122 1118122 1 + G A GBM 1118127 + 1118107 1118147 41 AAGCGCAAGTTGTTCGACTGCTCGCCAAACAAAACAGAAGC AAGCGCAAGTTGTTCAACTGCTCGCCAAACAAAACAGAAGC < 41bp 1 0.276636268710254 1 0.531671583652496 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR37 ENSG00000047056 CDS Human protein_coding chr10:1118127 chr10:1118122 synonymous SNV . 0 16 hm5C_associated_SNPs_22509 0 0 1 1 1 Cytosol 1 0.500373480264841 0.936656832695008 0.999253039470318 hm5C_site_23427 DeepMRMD:0.936656832695008;iRNA_m5C:0.999253039470318 23428 chr7 4794998 4794998 1 + C T GBM 4795002 + 4794982 4795022 41 CCCTACTACCGGACGGCCGACAAAGGCTGGCAGGTGAAGCC CCCTACTACCGGACGGTCGACAAAGGCTGGCAGGTGAAGCC < 41bp 1 0.27101617962125 1 0.816519260406494 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4795002 chr7:4794998 nonsynonymous SNV 0.276 5 17 hm5C_associated_SNPs_22510 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643912022 0.366961479187012 0.999536712175957 hm5C_site_23428 DeepMRMD:0.366961479187012;iRNA_m5C:0.999536712175957 23429 chrX 48372956 48372956 1 + T G GBM 48372950 + 48372930 48372970 41 AGCCACTGAATGTGGAGCTGCCTCGGTCAATGGTGGAAGTT AGCCACTGAATGTGGAGCTGCCTCGGGCAATGGTGGAAGTT < 41bp 1 0.0732200137983955 1 0.107996642589569 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48372950 chrX:48372956 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_22511 0 0 0 0 2 nucleolus 1 0.50023164398153 1 0.99953671203694 hm5C_site_23429 DeepMRMD:1;iRNA_m5C:0.99953671203694 23430 chr22 30074260 30074260 1 + G A GBM 30074250 + 30074230 30074270 41 TTCAACCTCATTGGTGACAGCCTGTCTTTCGACTTCAAAGA TTCAACCTCATTGGTGACAGCCTGTCTTTCAACTTCAAAGA < 41bp 1 0.102754546692602 1 0.0788628756999969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30074250 chr22:30074260 nonsynonymous SNV 0.996 4 31 hm5C_associated_SNPs_22512 0 0 1 0 2 Ribosome 1 0.500213427720982 1 0.999573144558037 hm5C_site_23430 DeepMRMD:1;iRNA_m5C:0.999573144558037 23431 chr4 119631200 119631200 1 + G T GBM 119631220 + 119631200 119631240 41 GAAACATATGCATCCTATTTCAGTGCTCCTAATTCCTACTT TAAACATATGCATCCTATTTCAGTGCTCCTAATTCCTACTT < 41bp 1 0.500189092380504 1 0.233778387308121 experiment 0.999621815238993 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control METTL14 ENSG00000145388 CDS Human protein_coding chr4:119631220 chr4:119631200 stopgain 0.999 1 1 hm5C_associated_SNPs_22513 0 0 1 0 1 Nucleus 1 0.500231644698361 1 0.999536710603279 hm5C_site_23431 DeepMRMD:1;iRNA_m5C:0.999536710603279 23432 chr22 26422832 26422832 1 + G A GBM 26422843 + 26422823 26422863 41 GGCAGTGACGAGGGAAACCTCTCGCTGAGGGTTGGGGCAAA GGCAGTGACAAGGGAAACCTCTCGCTGAGGGTTGGGGCAAA < 41bp 1 0.457452362744802 1 0.856359004974365 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26422843 chr22:26422832 nonsynonymous SNV 0.516 1 10 hm5C_associated_SNPs_22514 0 0 0 0 0 chromatin 1 0.500231643921092 0.28728199005127 0.999536712157815 hm5C_site_23432 DeepMRMD:0.28728199005127;iRNA_m5C:0.999536712157815 23433 chr5 1034387 1034387 1 + G A GBM 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGACGACCACCAGGAGTGGACGTTCACGCT < 41bp 1 0.432528514713867 1 0.75111198425293 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034387 nonsynonymous SNV 0.040 0 20 hm5C_associated_SNPs_22515 0 0 0 0 2 exosome 1 0.500231643921078 0.49777603149414 0.999536712157844 hm5C_site_23433 DeepMRMD:0.49777603149414;iRNA_m5C:0.999536712157844 23434 chr9 35736424 35736424 1 + G T GBM 35736415 + 35736395 35736435 41 CCCGCCAGCTTCGTGCCCTCCCCAGTGAGGACCCTTACCAG CCCGCCAGCTTCGTGCCCTCCCCAGTGAGTACCCTTACCAG < 41bp 1 0.502416110648281 1 0.209212422370911 experiment 0.995167778703439 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35736415 chr9:35736424 nonsynonymous SNV 0.664 2 30 hm5C_associated_SNPs_22516 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23434 DeepMRMD:1;iRNA_m5C:0.999536712157815 23435 chr19 38573338 38573338 1 + C T GBM 38573353 + 38573333 38573373 41 CGCCGCCTCGGCCATGGCCTCCCTCACGGCCTCGCGGGCCC CGCCGTCTCGGCCATGGCCTCCCTCACGGCCTCGCGGGCCC < 41bp 1 0.084665802723751 1 0.0563046634197235 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38573353 chr19:38573338 nonsynonymous SNV 0.160 0 6 hm5C_associated_SNPs_22518 0 0 1 0 0 Ribosome 1 0.500231643921046 1 0.999536712157908 hm5C_site_23435 DeepMRMD:1;iRNA_m5C:0.999536712157908 23436 chr1 147095987 147095987 1 + G A GBM 147095968 + 147095948 147095988 41 GGCCCCAGTGGGGGGCAGGGCAGCTTCCCAGGAGGGATGGG GGCCCCAGTGGGGGGCAGGGCAGCTTCCCAGGAGGGATGAG < 41bp 1 0.535657857293648 1 0.387190580368042 experiment 0.928684285412704 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCL9 ENSG00000116128 CDS Human protein_coding chr1:147095968 chr1:147095987 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_22519 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23436 DeepMRMD:1;iRNA_m5C:0.999536712157815 23437 chr12 56361680 56361680 1 + C A GBM 56361667 + 56361647 56361687 41 TGAGGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGC TGAGGGTGTGCCCAGTACTGCCATCCGAGAGATATCTCTGC < 41bp 1 0.0358608166897677 1 0.257896095514297 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361667 chr12:56361680 synonymous SNV . 0 34 hm5C_associated_SNPs_22520 0 0 1 0 2 Ribosome 1 0.50023162938329 1 0.99953674123342 hm5C_site_23437 DeepMRMD:1;iRNA_m5C:0.99953674123342 23438 chr12 56361680 56361680 1 + C A GBM 56361668 + 56361648 56361688 41 GAGGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGCT GAGGGTGTGCCCAGTACTGCCATCCGAGAGATATCTCTGCT < 41bp 1 0.213744329897664 1 0.065961629152298 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361668 chr12:56361680 synonymous SNV . 0 33 hm5C_associated_SNPs_22521 0 0 1 0 2 Ribosome 1 0.500231644265216 1 0.999536711469568 hm5C_site_23438 DeepMRMD:1;iRNA_m5C:0.999536711469568 23439 chr2 29344297 29344297 1 + C T GBM 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATTCTTTG < 41bp 1 0.0576261387234818 1 0.0858077108860016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344297 nonsynonymous SNV 0.593 0 36 hm5C_associated_SNPs_22522 0 0 1 1 1 nucleus 1 0.500231643921011 1 0.999536712157979 hm5C_site_23439 DeepMRMD:1;iRNA_m5C:0.999536712157979 23440 chr6 33169562 33169562 1 + T G GBM 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTGTGTCCTCTTCCTTATCCCCGTGGA < 41bp 1 0.107717919118908 1 0.0401052236557007 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169562 nonsynonymous SNV 0.997 3 17 hm5C_associated_SNPs_22523 0 0 1 0 2 Ribosome 1 0.500231643921095 1 0.999536712157809 hm5C_site_23440 DeepMRMD:1;iRNA_m5C:0.999536712157809 23441 chr1 22336336 22336336 1 + G A GBM 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCAACTGGAT < 41bp 1 0.578653843405638 1 0.194479584693909 experiment 0.842692313188724 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336336 nonsynonymous SNV 0.812 0 34 hm5C_associated_SNPs_22525 0 0 0 0 1 Endoplasmic reticulum 1 0.500231621604938 1 0.999536756790125 hm5C_site_23441 DeepMRMD:1;iRNA_m5C:0.999536756790125 23442 chr1 22336336 22336336 1 + G A GBM 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTCGAGTCTCCGCCTTCATCAACTGGATTGA < 41bp 1 0.436003669654125 1 0.047990471124649 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336336 nonsynonymous SNV 0.812 0 31 hm5C_associated_SNPs_22526 0 0 0 0 1 Endoplasmic reticulum 1 0.500231922941361 1 0.999536154117279 hm5C_site_23442 DeepMRMD:1;iRNA_m5C:0.999536154117279 23443 chr1 22336336 22336336 1 + G A GBM 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTCGAGTCTCCGCCTTCATCAACTGGATTGAGGA < 41bp 1 0.350901595243424 1 0.764822423458099 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336336 nonsynonymous SNV 0.812 0 28 hm5C_associated_SNPs_22527 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921387 0.470355153083802 0.999536712157225 hm5C_site_23443 DeepMRMD:0.470355153083802;iRNA_m5C:0.999536712157225 23444 chr1 22336336 22336336 1 + G A GBM 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTCGAGTCTCCGCCTTCATCAACTGGATTGAGGAGGT < 41bp 1 0.497378882853205 1 0.307883381843567 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336336 nonsynonymous SNV 0.812 0 25 hm5C_associated_SNPs_22528 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392109 1 0.99953671215782 hm5C_site_23444 DeepMRMD:1;iRNA_m5C:0.99953671215782 23445 chr1 22336336 22336336 1 + G A GBM 22336335 + 22336315 22336355 41 ACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG ACTCGAGTCTCCGCCTTCATCAACTGGATTGAGGAGGTGAG < 41bp 1 0.609569560247841 1 0.500301837921143 experiment 0.780860879504319 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336335 chr1:22336336 nonsynonymous SNV 0.812 0 22 hm5C_associated_SNPs_22529 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.999396324157714 0.999536712157815 hm5C_site_23445 DeepMRMD:0.999396324157714;iRNA_m5C:0.999536712157815 23446 chr1 38171190 38171190 1 + T G GBM 38171209 + 38171189 38171229 41 CTTGCTGACAGCAAAGAGATCTTCCTCACTGTGCCAGTGGG CGTGCTGACAGCAAAGAGATCTTCCTCACTGTGCCAGTGGG < 41bp 1 0.119539328712664 1 0.0556178390979767 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDCA8 ENSG00000134690 CDS Human protein_coding chr1:38171209 chr1:38171190 nonsynonymous SNV 0.990 4 2 hm5C_associated_SNPs_22530 0 0 1 0 0 Ribosome 1 0.500231641371847 1 0.999536717256307 hm5C_site_23446 DeepMRMD:1;iRNA_m5C:0.999536717256307 23447 chr16 57486775 57486775 1 + G A GBM 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCACCACATCCTGACGGCAGCCCTT < 41bp 1 0.555883455599327 1 0.815593719482422 experiment 0.888233088801346 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486775 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_22531 1 0 1 0 2 Ribosome 1 0.500231643919946 0.368812561035156 0.999536712160109 hm5C_site_23447 DeepMRMD:0.368812561035156;iRNA_m5C:0.999536712160109 Coenzyme Q10 deficiency, primary Coenzyme Q10 deficiency, primary 23448 chr14 39649961 39649961 1 + G T GBM 39649941 + 39649921 39649961 41 GGAAGAGGAAAAGGAAATAGCGATTGTTCATAGTGATGCAG GGAAGAGGAAAAGGAAATAGCGATTGTTCATAGTGATGCAT < 41bp 1 0.407361701822448 1 0.207034587860107 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39649941 chr14:39649961 stopgain 1.000 1 41 hm5C_associated_SNPs_22532 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23448 DeepMRMD:1;iRNA_m5C:0.999536712157815 23449 chr17 4859425 4859425 1 + G A GBM 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCAAATCGATCCAGGCGTGAG < 41bp 1 0.389630915145416 1 0.119606345891953 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859425 nonsynonymous SNV 0.641 2 23 hm5C_associated_SNPs_22534 0 0 1 0 2 nucleus 1 0.500231642104747 1 0.999536715790506 hm5C_site_23449 DeepMRMD:1;iRNA_m5C:0.999536715790506 23450 chr17 4859425 4859425 1 + G A GBM 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCAAATCGATCCAGGCGTGAGT < 41bp 1 0.341219010061976 1 0.663475573062897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859425 nonsynonymous SNV 0.641 2 22 hm5C_associated_SNPs_22535 0 0 1 0 2 nucleus 1 0.500231643921092 0.673048853874206 0.999536712157816 hm5C_site_23450 DeepMRMD:0.673048853874206;iRNA_m5C:0.999536712157816 23451 chrX 151869818 151869818 1 + G T GBM 151869802 + 151869782 151869822 41 TTGCAGCTGGTCTTTGGCATCGAGCTGATGGAAGTGGACCC TTGCAGCTGGTCTTTGGCATCGAGCTGATGGAAGTGTACCC < 41bp 1 0.605626438036354 1 0.747515797615051 experiment 0.788747123927292 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAGEA6 ENSG00000197172 CDS Human protein_coding chrX:151869802 chrX:151869818 nonsynonymous SNV 0.030 1 37 hm5C_associated_SNPs_22537 0 0 1 0 0 Ribosome 1 0.50023164391989 0.504968404769898 0.999536712160219 hm5C_site_23451 DeepMRMD:0.504968404769898;iRNA_m5C:0.999536712160219 23452 chr19 35501038 35501038 1 + G A GBM 35501031 + 35501011 35501051 41 TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT TGCAGCGTGAGATCCTGCTCCAGGGCCACCTCTACCTCTCT < 41bp 1 0.663024500111681 1 0.898587942123413 experiment 0.673950999776638 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501031 chr19:35501038 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_22538 0 0 1 0 2 Endoplasmic reticulum 1 0.500231642196259 0.202824115753174 0.999536715607482 hm5C_site_23452 DeepMRMD:0.202824115753174;iRNA_m5C:0.999536715607482 23453 chrX 73044958 73044958 1 + T C GBM 73044939 - 73044919 73044959 41 TACCATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTAT TGCCATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTAT < 41bp 1 0.0933831799302323 1 0.197257876396179 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044939 chrX:73044958 . . 0 2 hm5C_associated_SNPs_22539 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23453 DeepMRMD:1;iRNA_m5C:0.999536712157815 23454 chrX 73044958 73044958 1 + T C GBM 73044945 - 73044925 73044965 41 GCCAGATACCATGCTGGGTGCTAGAGCTACCAAAGGGGGAA GCCAGATGCCATGCTGGGTGCTAGAGCTACCAAAGGGGGAA < 41bp 1 0.498987958036709 1 0.295429050922394 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044945 chrX:73044958 . . 0 8 hm5C_associated_SNPs_22540 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23454 DeepMRMD:1;iRNA_m5C:0.999536712157815 23455 chr10 99327873 99327873 1 + T C GBM 99327885 + 99327865 99327905 41 ATCCTGGATGGAGCCAGCATCACCCTGCCTCATGGTAAGTG ATCCTGGACGGAGCCAGCATCACCCTGCCTCATGGTAAGTG < 41bp 1 0.389029672702474 1 0.0565467476844788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBTD1 ENSG00000165886 CDS Human protein_coding chr10:99327885 chr10:99327873 synonymous SNV . 0 9 hm5C_associated_SNPs_22541 0 0 0 0 1 Cytosol 1 0.500231643921196 1 0.999536712157609 hm5C_site_23455 DeepMRMD:1;iRNA_m5C:0.999536712157609 23456 chr7 128486389 128486389 1 + C T GBM 128486405 + 128486385 128486425 41 AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC AGGTTGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC < 41bp 1 0.0225025286035274 1 0.0272628962993622 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486405 chr7:128486389 synonymous SNV . 0 5 hm5C_associated_SNPs_22542 0 0 1 0 1 chromatin 1 0.500231643921077 1 0.999536712157846 hm5C_site_23456 DeepMRMD:1;iRNA_m5C:0.999536712157846 23457 chr5 82834314 82834314 1 + T C GBM 82834308 + 82834288 82834328 41 CACTCTCCCACGTAGTCCTGCCTCTGTCTTTATGGAGCAGG CACTCTCCCACGTAGTCCTGCCTCTGCCTTTATGGAGCAGG < 41bp 1 0.0149046312441822 1 0.0475550591945648 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82834308 chr5:82834314 nonsynonymous SNV 0.005 1 27 hm5C_associated_SNPs_22543 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_23457 DeepMRMD:1;iRNA_m5C:0.999536712157816 23458 chr8 98657012 98657012 1 + C T GBM 98657015 + 98656995 98657035 41 CAAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGCGGCCCCCG CAAGCGGGAGGAGGCGGTGGCCGTGCCGGCCGCGGCCCCCG < 41bp 1 0.665088061607603 1 0.484542727470398 experiment 0.669823876784795 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657015 chr8:98657012 nonsynonymous SNV 0.223 0 18 hm5C_associated_SNPs_22545 0 0 1 0 0 Ribosome 1 0.500231643792783 1 0.999536712414433 hm5C_site_23458 DeepMRMD:1;iRNA_m5C:0.999536712414433 23459 chr3 30713561 30713561 1 + G T GBM 30713566 + 30713546 30713586 41 AAGGACATCTTCTCAGACATCAATCTGAAGCATGAGAACAT AAGGACATCTTCTCATACATCAATCTGAAGCATGAGAACAT < 41bp 1 0.114722607963631 1 0.0592858791351318 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30713566 chr3:30713561 nonsynonymous SNV 0.992 3 16 hm5C_associated_SNPs_22548 0 0 1 0 0 Cytosol 1 0.500231647122877 1 0.999536705754246 hm5C_site_23459 DeepMRMD:1;iRNA_m5C:0.999536705754246 23460 chr5 139917073 139917073 1 + T A GBM 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAAATC < 41bp 1 0.26851109633959 1 0.486939817667007 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917073 nonsynonymous SNV 0.998 4 39 hm5C_associated_SNPs_22549 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23460 DeepMRMD:1;iRNA_m5C:0.999536712157815 23461 chr22 30038260 30038260 1 + G A GBM 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACACCGTCCAG < 41bp 1 0.658857409242081 1 0.581557035446167 experiment 0.682285181515839 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038260 nonsynonymous SNV 0.457 4 33 hm5C_associated_SNPs_22550 0 0 1 0 2 Ribosome 1 0.500231644035384 0.836885929107666 0.999536711929232 hm5C_site_23461 DeepMRMD:0.836885929107666;iRNA_m5C:0.999536711929232 23462 chr15 64418385 64418385 1 + C T GBM 64418395 + 64418375 64418415 41 AGAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTC AGAATGGCTTTATTGTCCCTCCGCCCCCGGAGAAGAGCCTC < 41bp 1 0.106631930116983 1 0.262977004051208 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418395 chr15:64418385 synonymous SNV . 0 11 hm5C_associated_SNPs_22551 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_23462 DeepMRMD:1;iRNA_m5C:0.999536712157813 23463 chr15 64418385 64418385 1 + C T GBM 64418396 + 64418376 64418416 41 GAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCA GAATGGCTTTATTGTCCCTCCGCCCCCGGAGAAGAGCCTCA < 41bp 1 0.191078818755604 1 0.548911869525909 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418396 chr15:64418385 synonymous SNV . 0 10 hm5C_associated_SNPs_22552 0 0 1 0 1 Ribosome 1 0.500231643918895 0.902176260948182 0.999536712162211 hm5C_site_23463 DeepMRMD:0.902176260948182;iRNA_m5C:0.999536712162211 23464 chr15 64418385 64418385 1 + C T GBM 64418398 + 64418378 64418418 41 ATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCATA ATGGCTTTATTGTCCCTCCGCCCCCGGAGAAGAGCCTCATA < 41bp 1 0.142852229694944 1 0.108212649822235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418398 chr15:64418385 synonymous SNV . 0 8 hm5C_associated_SNPs_22553 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23464 DeepMRMD:1;iRNA_m5C:0.999536712157815 23465 chr11 61252177 61252177 1 + C T GBM 61252171 + 61252151 61252191 41 TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCCAGGAGCA TCCTCCCAGGTCCGGAAGGTCCATTTTGACACCCAGGAGCA < 41bp 1 0.142343594124454 1 0.0357209742069244 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252171 chr11:61252177 synonymous SNV . 0 27 hm5C_associated_SNPs_22555 0 0 0 0 1 exosome 1 0.500231643914912 1 0.999536712170175 hm5C_site_23465 DeepMRMD:1;iRNA_m5C:0.999536712170175 23466 chr19 45797651 45797651 1 + T G GBM 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG ATGACCCGCAGAAACACCTACGTGTGCACAGAACGCCCGGG < 41bp 1 0.202453101689119 1 0.268726408481598 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797651 synonymous SNV . 0 24 hm5C_associated_SNPs_22556 0 0 1 0 2 Nucleus 1 0.500231688869432 1 0.999536622261136 hm5C_site_23466 DeepMRMD:1;iRNA_m5C:0.999536622261136 23467 chrX 73044561 73044561 1 + C T GBM 73044553 - 73044533 73044573 41 GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGT GAGATCCAGACCAAAAGTCACTTAATTCAGCTTGCGAATGT < 41bp 1 0.118190403940199 1 0.0389741361141205 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044553 chrX:73044561 . . 0 13 hm5C_associated_SNPs_22557 0 0 1 2 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_23467 DeepMRMD:1;iRNA_m5C:0.999536712157815 23468 chrX 73044561 73044561 1 + C T GBM 73044555 - 73044535 73044575 41 GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAAT GTGAGATCCAGACCAAAAGTCACTTAATTCAGCTTGCGAAT < 41bp 1 0.0785083382263474 1 0.049656093120575 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044555 chrX:73044561 . . 0 15 hm5C_associated_SNPs_22558 0 0 1 2 0 unknown 1 0.50023164390837 1 0.999536712183259 hm5C_site_23468 DeepMRMD:1;iRNA_m5C:0.999536712183259 23469 chrX 73044561 73044561 1 + C T GBM 73044568 - 73044548 73044588 41 TGAAGTAATAGATGTGAGATCCAGACCGAAAGTCACTTAAT TGAAGTAATAGATGTGAGATCCAGACCAAAAGTCACTTAAT < 41bp 1 0.267520391489238 1 0.768760442733765 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044568 chrX:73044561 . . 0 28 hm5C_associated_SNPs_22559 0 0 1 2 0 unknown 1 0.50023164419925 0.46247911453247 0.9995367116015 hm5C_site_23469 DeepMRMD:0.46247911453247;iRNA_m5C:0.9995367116015 23470 chr20 5154267 5154267 1 + G A GBM 5154273 + 5154253 5154293 41 GCAGATGATACCCCGGAGGTCCTCAATAGGGCCCTTTCCAA GCAGATGATACCCCAGAGGTCCTCAATAGGGCCCTTTCCAA < 41bp 1 0.187018042825879 1 0.0531316697597504 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDS2 ENSG00000101290 CDS Human protein_coding chr20:5154273 chr20:5154267 synonymous SNV . 0 15 hm5C_associated_SNPs_22560 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_23470 DeepMRMD:1;iRNA_m5C:0.999536712157815 23471 chr17 73780945 73780945 1 + G T GBM 73780936 + 73780916 73780956 41 ACTGAATAATAAAAGGGGAGCGGCGAAGAGGCAGGAAGACA ACTGAATAATAAAAGGGGAGCGGCGAAGATGCAGGAAGACA < 41bp 1 0.520829553719639 1 0.417326390743256 experiment 0.958340892560722 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73780936 chr17:73780945 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_22561 0 0 1 2 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23471 DeepMRMD:1;iRNA_m5C:0.999536712157815 23472 chrX 129159308 129159308 1 + G A GBM 129159311 + 129159291 129159331 41 AAATATCAGACTGGGGAGTACCTGACAGAGCAAGAAGACGA AAATATCAGACTGGGGAATACCTGACAGAGCAAGAAGACGA < 41bp 1 0.181098196087018 1 0.115467399358749 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129159311 chrX:129159308 synonymous SNV . 0 18 hm5C_associated_SNPs_22562 0 0 1 0 1 Cytosol 1 0.500231643925789 1 0.999536712148422 hm5C_site_23472 DeepMRMD:1;iRNA_m5C:0.999536712148422 23473 chr1 214819447 214819447 1 + G T GBM 214819453 + 214819433 214819473 41 ATTCTTGATGCCGAGAATTCCAAAGCAGAAGTAGAGACTCT ATTCTTGATGCCGATAATTCCAAAGCAGAAGTAGAGACTCT < 41bp 1 0.269177733319502 1 0.780218601226807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214819453 chr1:214819447 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_22563 0 0 1 0 0 Nucleus 1 0.500231643921092 0.439562797546386 0.999536712157815 hm5C_site_23473 DeepMRMD:0.439562797546386;iRNA_m5C:0.999536712157815 23474 chr2 54872404 54872404 1 + C T GBM 54872413 + 54872393 54872433 41 AAGAAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCT AAGAAGGAGATTGAAGAGCTCCAAAGCCAAGCCCAGGCCCT < 41bp 1 0.254107655765503 1 0.102052271366119 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872413 chr2:54872404 synonymous SNV . 0 12 hm5C_associated_SNPs_22565 0 0 1 0 1 Nucleus 1 0.50023164392121 1 0.999536712157581 hm5C_site_23474 DeepMRMD:1;iRNA_m5C:0.999536712157581 23475 chr2 54872404 54872404 1 + C T GBM 54872420 + 54872400 54872440 41 AGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCTGAGTCAG AGATTGAAGAGCTCCAAAGCCAAGCCCAGGCCCTGAGTCAG < 41bp 1 0.300633400706417 1 0.53986257314682 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872420 chr2:54872404 synonymous SNV . 0 5 hm5C_associated_SNPs_22566 0 0 1 0 1 Nucleus 1 0.500231643911691 0.92027485370636 0.999536712176617 hm5C_site_23475 DeepMRMD:0.92027485370636;iRNA_m5C:0.999536712176617 23476 chr3 57294017 57294017 1 + C T GBM 57294032 + 57294012 57294052 41 AGAATCGCATTTATTAGTCACTTGTGACTGTTTAAAGTAAG AGAATTGCATTTATTAGTCACTTGTGACTGTTTAAAGTAAG < 41bp 1 0.125160025863239 1 0.0864229500293732 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APPL1 ENSG00000157500 CDS Human protein_coding chr3:57294032 chr3:57294017 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_22567 0 0 1 0 1 Cytosol 1 0.5002316439542 1 0.999536712091601 hm5C_site_23476 DeepMRMD:1;iRNA_m5C:0.999536712091601 23477 chr17 20135090 20135090 1 + G A GBM 20135081 + 20135061 20135101 41 TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGAAGTC TTATTTCTAGGTAGTGTGATCAAGCTGGAAGAACAGAAGTC < 41bp 1 0.287031181250522 1 0.495704114437103 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135081 chr17:20135090 synonymous SNV . 0 30 hm5C_associated_SNPs_22568 0 0 1 0 2 Cytosol 1 0.500231643943711 1 0.999536712112577 hm5C_site_23477 DeepMRMD:1;iRNA_m5C:0.999536712112577 23478 chr17 20135090 20135090 1 + G A GBM 20135094 + 20135074 20135114 41 GTGTGATCAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGG GTGTGATCAAGCTGGAAGAACAGAAGTCAGACCTGGAGAGG < 41bp 1 0.676896443918359 1 0.262619107961655 experiment 0.646207112163283 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135094 chr17:20135090 synonymous SNV . 0 17 hm5C_associated_SNPs_22569 0 0 1 0 2 Cytosol 1 0.500231720982684 1 0.999536558034633 hm5C_site_23478 DeepMRMD:1;iRNA_m5C:0.999536558034633 23479 chr17 20135090 20135090 1 + G A GBM 20135101 + 20135081 20135121 41 CAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGGCAGCTGA CAAGCTGGAAGAACAGAAGTCAGACCTGGAGAGGCAGCTGA < 41bp 1 0.188952194966483 1 0.151825547218323 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135101 chr17:20135090 synonymous SNV . 0 10 hm5C_associated_SNPs_22570 0 0 1 0 2 Cytosol 1 0.500231643939121 1 0.999536712121758 hm5C_site_23479 DeepMRMD:1;iRNA_m5C:0.999536712121758 23480 chr17 40840915 40840915 1 + G A GBM 40840909 + 40840889 40840929 41 TCCAGGTTGTCCCAAGCCAGCCAGTCGATGGGACTGCCACT TCCAGGTTGTCCCAAGCCAGCCAGTCAATGGGACTGCCACT < 41bp 1 0.138835315781306 1 0.0751968324184418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40840909 chr17:40840915 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_22571 0 0 0 0 1 Cytosol 1 0.500231643921084 1 0.999536712157833 hm5C_site_23480 DeepMRMD:1;iRNA_m5C:0.999536712157833 23481 chr16 57243040 57243040 1 + G T GBM 57243043 + 57243023 57243063 41 GAGTTATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA GAGTTATTCCACTGGAATATCCACTGGGACCAGCTGTTATA < 41bp 1 0.213680489603058 1 0.0871851742267609 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57243043 chr16:57243040 nonsynonymous SNV 0.997 5 18 hm5C_associated_SNPs_22572 0 0 1 0 2 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_23481 DeepMRMD:1;iRNA_m5C:0.99953671215782 23482 chr1 145518146 145518146 1 + G T GBM 145518156 + 145518136 145518176 41 GTTGTCCTGAGATTCTGCATCACTGTTAGTCACCTCAATCG GTTGTCCTGATATTCTGCATCACTGTTAGTCACCTCAATCG < 41bp 1 0.225964053953401 1 0.0460611879825592 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145518156 chr1:145518146 nonsynonymous SNV . 0 11 hm5C_associated_SNPs_22573 0 0 1 0 1 Ribosome 1 0.500231621237758 1 0.999536757524484 hm5C_site_23482 DeepMRMD:1;iRNA_m5C:0.999536757524484 23483 chr11 67160985 67160985 1 + C T GBM 67160984 + 67160964 67161004 41 CAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGA CAGTCTTTCCTGTCTGTCTTCTGCTCACTGGCGATGCTGGA < 41bp 1 0.261559936730888 1 0.455168038606644 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD9A ENSG00000172613 CDS Human protein_coding chr11:67160984 chr11:67160985 nonsynonymous SNV 0.945 4 22 hm5C_associated_SNPs_22574 0 0 1 0 2 nucleus 1 0.500231644973768 1 0.999536710052464 hm5C_site_23483 DeepMRMD:1;iRNA_m5C:0.999536710052464 23484 chr1 162040020 162040020 1 + T C GBM 162040009 + 162039989 162040029 41 AACCTTGTGGACGATGGGCACGACCTGCGGATCCCCTTGCA AACCTTGTGGACGATGGGCACGACCTGCGGACCCCCTTGCA < 41bp 1 0.299251522278906 1 0.363204479217529 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162040009 chr1:162040020 nonsynonymous SNV 0.999 3 32 hm5C_associated_SNPs_22575 0 0 1 0 1 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_23484 DeepMRMD:1;iRNA_m5C:0.999536712157815 23485 chr5 176520478 176520478 1 + C T GBM 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGTGGCCCCGCCTTGCTCGCCGGCCTCG < 41bp 1 0.147655102968534 1 0.0563865005970001 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520483 chr5:176520478 nonsynonymous SNV 0.283 0 16 hm5C_associated_SNPs_22576 0 0 1 0 3 Endoplasmic reticulum 1 0.50023164392209 1 0.999536712155819 hm5C_site_23485 DeepMRMD:1;iRNA_m5C:0.999536712155819 23486 chr11 47289884 47289884 1 + A G GBM 47289881 + 47289861 47289901 41 ATATGTGGAAGCCCTGCATGCCTACGTCTCCATCCACCATC ATATGTGGAAGCCCTGCATGCCTGCGTCTCCATCCACCATC < 41bp 1 0.189272397685277 1 0.0236691832542419 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289881 chr11:47289884 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_22577 0 0 1 0 2 Ribosome 1 0.500231648451071 1 0.999536703097858 hm5C_site_23486 DeepMRMD:1;iRNA_m5C:0.999536703097858 23487 chr11 47289884 47289884 1 + A G GBM 47289902 + 47289882 47289922 41 CTACGTCTCCATCCACCATCCCCATGTGAGTCTCCCCATGG CTGCGTCTCCATCCACCATCCCCATGTGAGTCTCCCCATGG < 41bp 1 0.186327347332967 1 0.408744156360626 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289902 chr11:47289884 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_22578 0 0 1 0 2 Ribosome 1 0.500231390477471 1 0.999537219045057 hm5C_site_23487 DeepMRMD:1;iRNA_m5C:0.999537219045057 23488 chr19 38633332 38633332 1 + A G GBM 38633337 + 38633317 38633357 41 CCACCTACGTGAGATACAAGCCATCCCCAGAAAGGTCAGCC CCACCTACGTGAGATGCAAGCCATCCCCAGAAAGGTCAGCC < 41bp 1 0.0112704963498152 1 0.422033131122589 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38633337 chr19:38633332 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_22579 0 0 0 0 1 Ribosome 1 0.500231643979934 1 0.999536712040132 hm5C_site_23488 DeepMRMD:1;iRNA_m5C:0.999536712040132 23489 chr1 151374077 151374077 1 + G T GBM 151374064 + 151374044 151374084 41 AGGTGTTGAAATAGAGGGACCATTGTCTACAGAGACCAACT AGGTGTTGAAATAGAGGGACCATTGTCTACAGATACCAACT < 41bp 1 0.111090706792158 1 0.11722406744957 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151374064 chr1:151374077 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_22580 0 0 1 0 2 Ribosome 1 0.500231643920794 1 0.999536712158412 hm5C_site_23489 DeepMRMD:1;iRNA_m5C:0.999536712158412 23490 chr13 53039487 53039487 1 + G T GBM 53039491 + 53039471 53039511 41 GATTAAAAATATTCCAGATGCCAAAAAGCTTGTTAAGTATT GATTAAAAATATTCCATATGCCAAAAAGCTTGTTAAGTATT < 41bp 1 0.266928341262036 1 0.149742096662521 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CKAP2 ENSG00000136108 CDS Human protein_coding chr13:53039491 chr13:53039487 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_22582 0 0 1 0 1 Cytosol 1 0.500231607766237 1 0.999536784467526 hm5C_site_23490 DeepMRMD:1;iRNA_m5C:0.999536784467526 23491 chr19 3119218 3119218 1 + G T GBM 3119221 + 3119201 3119241 41 CAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCGGACCAT CAGAACCGGATGGAGGATAGCAAAGCCCTGTTCCGGACCAT < 41bp 1 0.393011177321995 1 0.466029137372971 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNA11 ENSG00000088256 CDS Human protein_coding chr19:3119221 chr19:3119218 nonsynonymous SNV 0.993 5 18 hm5C_associated_SNPs_22583 0 0 1 0 1 Cytosol 1 0.500231643929966 1 0.999536712140068 hm5C_site_23491 DeepMRMD:1;iRNA_m5C:0.999536712140068 23492 chr11 61503224 61503224 1 + A G GBM 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGGCCTGACGGGTGATGCTGAGCG < 41bp 1 0.218748378911637 1 0.0968572199344635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503224 nonsynonymous SNV 0.987 4 20 hm5C_associated_SNPs_22584 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921018 1 0.999536712157964 hm5C_site_23492 DeepMRMD:1;iRNA_m5C:0.999536712157964 23493 chr1 201966553 201966553 1 + G T GBM 201966541 + 201966521 201966561 41 CCTGCCTGCTAGCTGGGGACCGCTCCTTGGCAGATGTCATC CCTGCCTGCTAGCTGGGGACCGCTCCTTGGCATATGTCATC < 41bp 1 0.222552597916595 1 0.0673868060112 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966541 chr1:201966553 nonsynonymous SNV 0.942 3 33 hm5C_associated_SNPs_22586 0 0 1 0 0 Ribosome 1 0.500231646152922 1 0.999536707694156 hm5C_site_23493 DeepMRMD:1;iRNA_m5C:0.999536707694156 23494 chr1 201966553 201966553 1 + G T GBM 201966545 + 201966525 201966565 41 CCTGCTAGCTGGGGACCGCTCCTTGGCAGATGTCATCATCC CCTGCTAGCTGGGGACCGCTCCTTGGCATATGTCATCATCC < 41bp 1 0.157730985166847 1 0.148485332727432 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966545 chr1:201966553 nonsynonymous SNV 0.942 3 29 hm5C_associated_SNPs_22587 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23494 DeepMRMD:1;iRNA_m5C:0.999536712157815 23495 chr7 4794990 4794990 1 + C T GBM 4795002 + 4794982 4795022 41 CCCTACTACCGGACGGCCGACAAAGGCTGGCAGGTGAAGCC CCCTACTATCGGACGGCCGACAAAGGCTGGCAGGTGAAGCC < 41bp 1 0.237929626572687 1 0.54475325345993 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4795002 chr7:4794990 synonymous SNV . 0 9 hm5C_associated_SNPs_22588 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.91049349308014 0.999536712157815 hm5C_site_23495 DeepMRMD:0.91049349308014;iRNA_m5C:0.999536712157815 23496 chr11 126279186 126279186 1 + G A GBM 126279193 + 126279173 126279213 41 GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCCT GTTTCTGGAAACAACCTCCCCTCATCTGGGATGTCAATCCT < 41bp 1 0.313972542105821 1 0.116438269615173 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126279193 chr11:126279186 synonymous SNV . 0 14 hm5C_associated_SNPs_22589 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23496 DeepMRMD:1;iRNA_m5C:0.999536712157815 23497 chr4 52740458 52740458 1 + C A GBM 52740449 + 52740429 52740469 41 TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGACTGCT TTTTGTAGGAAGTCTGCGGTCTTGCAGTTATTCAGACTGCT < 41bp 1 0.223902196340122 1 0.0580459535121918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52740449 chr4:52740458 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_22591 0 0 1 1 2 Ribosome 1 0.500232527929102 1 0.999534944141796 hm5C_site_23497 DeepMRMD:1;iRNA_m5C:0.999534944141796 23498 chrX 73046735 73046735 1 + C T GBM 73046721 - 73046701 73046741 41 TCTTAAGACCTGGGACAGGACACATGGAAGGCCTAAGAACT TCTTAAAACCTGGGACAGGACACATGGAAGGCCTAAGAACT < 41bp 1 0.241514087210145 1 0.11356645822525 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046721 chrX:73046735 . . 0 7 hm5C_associated_SNPs_22592 0 0 1 0 0 unknown 1 0.500231643921496 1 0.999536712157008 hm5C_site_23498 DeepMRMD:1;iRNA_m5C:0.999536712157008 23499 chrX 73046735 73046735 1 + C T GBM 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGAAGTCTTAAAACCTGGGACAGGACACATGGAAGGCCTAA < 41bp 1 0.53041130174944 1 0.745455384254456 experiment 0.939177396501119 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046735 . . 0 12 hm5C_associated_SNPs_22593 0 0 1 0 0 unknown 1 0.500231643799747 0.509089231491088 0.999536712400505 hm5C_site_23499 DeepMRMD:0.509089231491088;iRNA_m5C:0.999536712400505 23500 chrX 73046735 73046735 1 + C T GBM 73046754 - 73046734 73046774 41 GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAAA < 41bp 1 0.57923752999461 1 0.229105174541473 experiment 0.841524940010779 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046754 chrX:73046735 . . 0 40 hm5C_associated_SNPs_22594 0 0 1 0 0 unknown 1 0.50023165658691 1 0.999536686826179 hm5C_site_23500 DeepMRMD:1;iRNA_m5C:0.999536686826179 23501 chr1 94964161 94964161 1 + C T GBM 94964179 + 94964159 94964199 41 TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC TTTGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC < 41bp 1 0.563048393432145 1 0.209808140993118 experiment 0.87390321313571 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964179 chr1:94964161 stopgain 0.999 0 3 hm5C_associated_SNPs_22595 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23501 DeepMRMD:1;iRNA_m5C:0.999536712157815 23502 chr2 64112910 64112910 1 + C A GBM 64112920 + 64112900 64112940 41 CATAGATAATCTGGGTGCCACAGTGGATCTGTATATTCTTA CATAGATAATATGGGTGCCACAGTGGATCTGTATATTCTTA < 41bp 1 0.39177634354394 1 0.484553009271622 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UGP2 ENSG00000169764 CDS Human protein_coding chr2:64112920 chr2:64112910 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_22596 0 0 1 0 0 Ribosome 1 0.500231644088711 1 0.999536711822579 hm5C_site_23502 DeepMRMD:1;iRNA_m5C:0.999536711822579 23503 chr7 128445491 128445491 1 + G T GBM 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATTGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT < 41bp 1 0.165889388361434 1 0.292534410953522 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445491 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_22597 0 0 1 0 2 chromatin 1 0.500231643913724 1 0.999536712172552 hm5C_site_23503 DeepMRMD:1;iRNA_m5C:0.999536712172552 23504 chr7 128445491 128445491 1 + G T GBM 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TTGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG < 41bp 1 0.337702138090947 1 0.374267727136612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445491 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_22598 0 0 1 0 2 chromatin 1 0.500231643921096 1 0.999536712157807 hm5C_site_23504 DeepMRMD:1;iRNA_m5C:0.999536712157807 23505 chr15 22862986 22862986 1 + A G GBM 22863000 + 22862980 22863020 41 TGATGTATGTGTGGATAGATCATCGGAATCTGTGACATGCC TGATGTGTGTGTGGATAGATCATCGGAATCTGTGACATGCC < 41bp 1 0.443433657872303 1 0.0760754346847534 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBGCP5 ENSG00000153575 CDS Human other chr15:22863000 chr15:22862986 synonymous SNV . 0 7 hm5C_associated_SNPs_22599 0 0 1 0 1 chromatin 1 0.500231677224019 1 0.999536645551962 hm5C_site_23505 DeepMRMD:1;iRNA_m5C:0.999536645551962 23506 chr17 30692352 30692352 1 + T G GBM 30692372 + 30692352 30692392 41 TGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT GGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT < 41bp 1 0.261336504202298 1 0.267658710479736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692372 chr17:30692352 nonsynonymous SNV 0.976 2 1 hm5C_associated_SNPs_22600 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23506 DeepMRMD:1;iRNA_m5C:0.999536712157815 23507 chr11 65268899 65268899 1 + G T GBM 65268891 + 65268871 65268911 41 GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTA GAGGTCTGTGGAAGAGATGTCCATTGGATAAATGGCTGGTA < 41bp 1 0.156230296322389 1 0.395190715789795 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268891 chr11:65268899 . . 0 29 hm5C_associated_SNPs_22601 0 0 1 2 0 unknown 1 0.500231643921082 1 0.999536712157836 hm5C_site_23507 DeepMRMD:1;iRNA_m5C:0.999536712157836 23508 chr12 53342931 53342931 1 + C A GBM 53342950 + 53342930 53342970 41 TCCTGTCCTTTCTCTCTCCCCGGACAGCATGAGCTTCACCA TACTGTCCTTTCTCTCTCCCCGGACAGCATGAGCTTCACCA < 41bp 1 0.148262178196808 1 0.326000034809113 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT18 ENSG00000111057 UTR5 Human protein_coding chr12:53342950 chr12:53342931 . . 0 2 hm5C_associated_SNPs_22602 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_23508 DeepMRMD:1;iRNA_m5C:0.999536712157815 23509 chr12 48528823 48528823 1 + T G GBM 48528825 + 48528805 48528845 41 CAGAAGACATCAAGAATGTTCGTATGAATGAAGCCAGAGAG CAGAAGACATCAAGAATGGTCGTATGAATGAAGCCAGAGAG < 41bp 1 0.22890894249323 1 0.195775479078293 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PFKM ENSG00000152556 splicing Human protein_coding chr12:48528825 chr12:48528823 . 0.195 0 19 hm5C_associated_SNPs_22603 0 0 1 0 1 Nucleus 1 0.500238142942828 1 0.999523714114345 hm5C_site_23509 DeepMRMD:1;iRNA_m5C:0.999523714114345 23510 chr1 161179354 161179354 1 + C A GBM 161179358 + 161179338 161179378 41 CTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAAG CTTGGGGCCATGACCCATTTCTTCTGGCTGTTTGAAGAAAG < 41bp 1 0.295782480171854 1 0.13319993019104 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179358 chr1:161179354 nonsynonymous SNV 0.998 5 17 hm5C_associated_SNPs_22604 0 0 1 0 2 Ribosome 1 0.500231643921091 1 0.999536712157819 hm5C_site_23510 DeepMRMD:1;iRNA_m5C:0.999536712157819 23511 chr19 13063818 13063818 1 + C A GBM 13063834 + 13063814 13063854 41 AGAACTTGGCTGCCAACTTCCTCCTGAGTCAGAACTTTGAT AGAAATTGGCTGCCAACTTCCTCCTGAGTCAGAACTTTGAT < 41bp 1 0.510760307593144 1 0.837677419185638 experiment 0.978479384813712 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD23A ENSG00000179262 CDS Human protein_coding chr19:13063834 chr19:13063818 nonsynonymous SNV 0.999 3 5 hm5C_associated_SNPs_22605 0 0 1 0 1 Ribosome 1 0.500231643921092 0.324645161628724 0.999536712157815 hm5C_site_23511 DeepMRMD:0.324645161628724;iRNA_m5C:0.999536712157815 23512 chr6 74502429 74502429 1 + A C GBM 74502417 + 74502397 74502437 41 TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTTTGCT TGCCTTATGGCTGTGGTGAACAGAACATGATACATTTTGCT < 41bp 1 0.405644214919373 1 0.622949063777924 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74502417 chr6:74502429 nonsynonymous SNV 0.465 0 33 hm5C_associated_SNPs_22606 0 0 0 0 2 Ribosome 1 0.500231643045134 0.754101872444152 0.999536713909733 hm5C_site_23512 DeepMRMD:0.754101872444152;iRNA_m5C:0.999536713909733 23513 chr3 10123036 10123036 1 + G A GBM 10123048 + 10123028 10123068 41 AGTGTTTAGCTGCTGAGAATCACGGTGTAGTTGATGGACCA AGTGTTTAACTGCTGAGAATCACGGTGTAGTTGATGGACCA < 41bp 1 0.615946405168505 1 0.809367179870605 experiment 0.768107189662991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10123048 chr3:10123036 nonsynonymous SNV 0.458 0 9 hm5C_associated_SNPs_22607 0 0 1 0 0 Cytosol 1 0.500231643922518 0.38126564025879 0.999536712154964 hm5C_site_23513 DeepMRMD:0.38126564025879;iRNA_m5C:0.999536712154964 23514 chr19 38780793 38780793 1 + C A GBM 38780801 + 38780781 38780821 41 CACTGGGCCTTGCCGTGCATCCTTCCCACGCTGGTACTTTG CACTGGGCCTTGACGTGCATCCTTCCCACGCTGGTACTTTG < 41bp 1 0.0126129282788349 1 0.0807620286941528 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPINT2 ENSG00000167642;ENSG00000267748 CDS Human other chr19:38780801 chr19:38780793 stopgain 0.780 1 13 hm5C_associated_SNPs_22608 0 0 1 0 1 Ribosome 1 0.500231643388498 1 0.999536713223005 hm5C_site_23514 DeepMRMD:1;iRNA_m5C:0.999536713223005 23515 chr2 10022847 10022847 1 + G A GBM 10022851 + 10022831 10022871 41 ACAGGTTTGTTGAAGAGGACCATATTCCTTACATAAATGCT ACAGGTTTGTTGAAGAAGACCATATTCCTTACATAAATGCT < 41bp 1 0.0541752487490136 1 0.126997977495193 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAF1B ENSG00000115750 CDS Human protein_coding chr2:10022851 chr2:10022847 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_22609 0 0 1 0 2 Endoplasmic reticulum 1 0.500233975097864 1 0.999532049804271 hm5C_site_23515 DeepMRMD:1;iRNA_m5C:0.999532049804271 23516 chr1 87208010 87208010 1 + C A GBM 87208023 + 87208003 87208043 41 ATCACCTCTCCTTCCAACCTCAGTGACCTTAAGGAGTGTAG ATCACCTATCCTTCCAACCTCAGTGACCTTAAGGAGTGTAG < 41bp 1 0.344827434122448 1 0.217526972293854 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87208023 chr1:87208010 nonsynonymous SNV 0.995 1 8 hm5C_associated_SNPs_22610 0 0 1 0 0 Ribosome 1 0.500231635589119 1 0.999536728821762 hm5C_site_23516 DeepMRMD:1;iRNA_m5C:0.999536728821762 23517 chr11 210615 210615 1 + C A GBM 210603 + 210583 210623 41 CTTTACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGAT CTTTACCGACACCTGGGGACCCTTCTCCGGCAATGTGTGAT < 41bp 1 0.0120282185506887 1 0.0652305781841278 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:210603 chr11:210615 nonsynonymous SNV 0.907 1 33 hm5C_associated_SNPs_22611 0 0 1 0 2 Ribosome 1 0.500231643921017 1 0.999536712157966 hm5C_site_23517 DeepMRMD:1;iRNA_m5C:0.999536712157966 23518 chr1 161199503 161199503 1 + G A GBM 161199507 + 161199487 161199527 41 GGCTCCCTTTGAACCCGGCCCAATCTTTGGTCCCAGCATTT GGCTCCCTTTGAACCCAGCCCAATCTTTGGTCCCAGCATTT < 41bp 1 0.0542982781909407 1 0.063602477312088 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NR1I3 ENSG00000143257 CDS Human protein_coding chr1:161199507 chr1:161199503 nonsynonymous SNV 0.000 2 17 hm5C_associated_SNPs_22612 0 0 1 0 0 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_23518 DeepMRMD:1;iRNA_m5C:0.999536712157815 23519 chr11 121495965 121495965 1 + C T GBM 121495977 + 121495957 121495997 41 CCATCCTGCTGTACGATGAGCTGGGGTCTGGTGAGTTGCGA CCATCCTGTTGTACGATGAGCTGGGGTCTGGTGAGTTGCGA < 41bp 1 0.483715412867975 1 0.420775443315506 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SORL1 ENSG00000137642 CDS Human protein_coding chr11:121495977 chr11:121495965 synonymous SNV . 0 9 hm5C_associated_SNPs_22613 0 0 1 0 1 Nucleus 1 0.500230997362573 1 0.999538005274855 hm5C_site_23519 DeepMRMD:1;iRNA_m5C:0.999538005274855 23520 chr16 3712025 3712025 1 + C T GBM 3712045 - 3712025 3712065 41 CCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG CCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCA < 41bp 1 0.272973938436825 1 0.173111766576767 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712045 chr16:3712025 nonsynonymous SNV 0.755 1 41 hm5C_associated_SNPs_22614 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643919621 1 0.999536712160757 hm5C_site_23520 DeepMRMD:1;iRNA_m5C:0.999536712160757 23521 chr4 53579475 53579475 1 + C A GBM 53579455 + 53579435 53579475 41 CCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTC CCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTA < 41bp 1 0.336365986856547 1 0.228628814220428 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579455 chr4:53579475 . . 0 41 hm5C_associated_SNPs_22615 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23521 DeepMRMD:1;iRNA_m5C:0.999536712157815 23522 chr4 53579475 53579475 1 + C A GBM 53579457 + 53579437 53579477 41 AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTCTC AGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTATC < 41bp 1 0.666717896666938 1 0.571459293365479 experiment 0.666564206666125 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579457 chr4:53579475 . . 0 39 hm5C_associated_SNPs_22616 0 0 1 2 0 unknown 1 0.500231643921092 0.857081413269042 0.999536712157815 hm5C_site_23522 DeepMRMD:0.857081413269042;iRNA_m5C:0.999536712157815 23523 chr4 53579475 53579475 1 + C A GBM 53579477 + 53579457 53579497 41 CAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGA CAGAAGGGTAAAGTAAGTATCCATAAAACCCAGAGAAGAGA < 41bp 1 0.155381207631512 1 0.0879610776901245 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579477 chr4:53579475 . . 0 19 hm5C_associated_SNPs_22617 0 0 1 2 0 unknown 1 0.500231631009843 1 0.999536737980314 hm5C_site_23523 DeepMRMD:1;iRNA_m5C:0.999536737980314 23524 chr4 53579475 53579475 1 + C A GBM 53579478 + 53579458 53579498 41 AGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGAC AGAAGGGTAAAGTAAGTATCCATAAAACCCAGAGAAGAGAC < 41bp 1 0.392518314128283 1 0.269105076789856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579478 chr4:53579475 . . 0 18 hm5C_associated_SNPs_22618 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23524 DeepMRMD:1;iRNA_m5C:0.999536712157815 23525 chr4 53579475 53579475 1 + C A GBM 53579485 + 53579465 53579505 41 TAAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAG TAAAGTAAGTATCCATAAAACCCAGAGAAGAGACTGGAAAG < 41bp 1 0.334111618491323 1 0.208082050085068 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579485 chr4:53579475 . . 0 11 hm5C_associated_SNPs_22619 0 0 1 2 0 unknown 1 0.500231643921819 1 0.999536712156363 hm5C_site_23525 DeepMRMD:1;iRNA_m5C:0.999536712156363 23526 chr4 53579475 53579475 1 + C A GBM 53579486 + 53579466 53579506 41 AAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGC AAAGTAAGTATCCATAAAACCCAGAGAAGAGACTGGAAAGC < 41bp 1 0.522102201151858 1 0.153190612792969 experiment 0.955795597696285 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579486 chr4:53579475 . . 0 10 hm5C_associated_SNPs_22620 0 0 1 2 0 unknown 1 0.500231753368673 1 0.999536493262654 hm5C_site_23526 DeepMRMD:1;iRNA_m5C:0.999536493262654 23527 chr4 53579475 53579475 1 + C A GBM 53579487 + 53579467 53579507 41 AAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGCT AAGTAAGTATCCATAAAACCCAGAGAAGAGACTGGAAAGCT < 41bp 1 0.399826294720831 1 0.421153753995895 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579487 chr4:53579475 . . 0 9 hm5C_associated_SNPs_22621 0 0 1 2 0 unknown 1 0.50023164392102 1 0.999536712157961 hm5C_site_23527 DeepMRMD:1;iRNA_m5C:0.999536712157961 23528 chr19 1053474 1053474 1 + C T GBM 1053481 + 1053461 1053501 41 AGAGCTAGACACGCGGCTGGCGGAGCTGAGGCTCACTGGCT AGAGCTAGACACGTGGCTGGCGGAGCTGAGGCTCACTGGCT < 41bp 1 0.477470142536967 1 0.876803040504456 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1053481 chr19:1053474 nonsynonymous SNV 0.007 4 14 hm5C_associated_SNPs_22622 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644028806 0.246393918991088 0.999536711942387 hm5C_site_23528 DeepMRMD:0.246393918991088;iRNA_m5C:0.999536711942387 23529 chr1 228495994 228495994 1 + C T GBM 228496008 + 228495988 228496028 41 CACACCCTGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGG CACACCTTGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGG < 41bp 1 0.100068018773817 1 0.603531539440155 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496008 chr1:228495994 synonymous SNV . 0 7 hm5C_associated_SNPs_22623 0 0 0 0 1 Ribosome 1 0.500260360355217 0.79293692111969 0.999479279289567 hm5C_site_23529 DeepMRMD:0.79293692111969;iRNA_m5C:0.999479279289567 23530 chr17 41561526 41561526 1 + C T GBM 41561537 + 41561517 41561557 41 CTGGACAATCACTTGGGGATCAACGACAAGGACCTTGGTGA CTGGACAATTACTTGGGGATCAACGACAAGGACCTTGGTGA < 41bp 1 0.534189050952576 1 0.411558300256729 experiment 0.931621898094849 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41561537 chr17:41561526 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_22624 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23530 DeepMRMD:1;iRNA_m5C:0.999536712157815 23531 chr19 12924237 12924237 1 + G A GBM 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCCCGTCCCCGTTCTTCCCACCAATATTTCCTGGAACG < 41bp 1 0.116369355896048 1 0.0832952558994293 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924237 nonsynonymous SNV 0.058 2 26 hm5C_associated_SNPs_22625 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23531 DeepMRMD:1;iRNA_m5C:0.999536712157815 23532 chr19 12924237 12924237 1 + G A GBM 12924253 + 12924233 12924273 41 CACCGATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAG CACCAATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAG < 41bp 1 0.588049260301688 1 0.357743382453918 experiment 0.823901479396624 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924253 chr19:12924237 nonsynonymous SNV 0.058 2 5 hm5C_associated_SNPs_22626 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23532 DeepMRMD:1;iRNA_m5C:0.999536712157815 23533 chr20 34832800 34832800 1 + C A GBM 34832788 + 34832768 34832808 41 TACCACCAGCTTGGTGAGATCCCCGCTGACTTCTTCGTAGA TACCACCAGCTTGGTGAGATCCCCGCTGACTTATTCGTAGA < 41bp 1 0.388953724840817 1 0.635536134243011 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control AAR2 ENSG00000131043 CDS Human protein_coding chr20:34832788 chr20:34832800 nonsynonymous SNV 0.996 3 33 hm5C_associated_SNPs_22627 0 0 1 0 1 Ribosome 1 0.500231643922266 0.728927731513978 0.999536712155468 hm5C_site_23533 DeepMRMD:0.728927731513978;iRNA_m5C:0.999536712155468 23534 chr12 110032871 110032871 1 + C T GBM 110032880 + 110032860 110032900 41 CTGAATGCCCTCGGCGTGGGCCACGCCTCTCTGGACCAGCT CTGAATGCCCTTGGCGTGGGCCACGCCTCTCTGGACCAGCT < 41bp 1 0.160005014664271 1 0.116679489612579 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVK ENSG00000110921 CDS Human protein_coding chr12:110032880 chr12:110032871 synonymous SNV . 0 12 hm5C_associated_SNPs_22628 1 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23534 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 23535 chr8 1791522 1791522 1 + C A GBM 1791535 + 1791515 1791555 41 GCAGGAGCTCCTTCCCTTAACAGAGCTGAGAGAGGCATCTG GCAGGAGATCCTTCCCTTAACAGAGCTGAGAGAGGCATCTG < 41bp 1 0.685290537169975 1 0.387626200914383 experiment 0.62941892566005 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1791535 chr8:1791522 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_22629 0 0 1 0 2 Nucleus 1 0.500231643945892 1 0.999536712108215 hm5C_site_23535 DeepMRMD:1;iRNA_m5C:0.999536712108215 23536 chr3 169953103 169953103 1 + G A GBM 169953106 + 169953086 169953126 41 TGTGTTCTTTTGACAACGAACAGCTCTTCACCATGAAATGG TGTGTTCTTTTGACAACAAACAGCTCTTCACCATGAAATGG < 41bp 1 0.547287000129407 1 0.245655387639999 experiment 0.905425999741187 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169953106 chr3:169953103 nonsynonymous SNV 0.655 1 18 hm5C_associated_SNPs_22632 0 0 1 0 2 Ribosome 1 0.50023237442169 1 0.999535251156619 hm5C_site_23536 DeepMRMD:1;iRNA_m5C:0.999535251156619 23537 chr7 129939210 129939210 1 + G A GBM 129939222 + 129939202 129939242 41 ATCCCAGGGCTTAGAGTACGCAGTGACAATTGAGGACCTGC ATCCCAGGACTTAGAGTACGCAGTGACAATTGAGGACCTGC < 41bp 1 0.476577648777482 1 0.283393114805222 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129939222 chr7:129939210 nonsynonymous SNV 0.571 1 9 hm5C_associated_SNPs_22633 0 0 0 0 1 Endoplasmic reticulum 1 0.5002316438865 1 0.999536712227 hm5C_site_23537 DeepMRMD:1;iRNA_m5C:0.999536712227 23538 chr7 43591831 43591831 1 + C T GBM 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTTGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC < 41bp 1 0.181433776265969 1 0.321035623550415 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591831 nonsynonymous SNV 0.964 2 9 hm5C_associated_SNPs_22634 0 0 0 0 1 Cytosol 1 0.500235937263326 1 0.999528125473348 hm5C_site_23538 DeepMRMD:1;iRNA_m5C:0.999528125473348 23539 chr3 41275099 41275099 1 + G A GBM 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACCTGTGCAGCTGAAATTCTTTCTAACCTCACTTGCAAT < 41bp 1 0.100570993778169 1 0.228108555078506 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275099 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_22635 0 0 1 0 1 Nucleus 1 0.500231643920152 1 0.999536712159697 hm5C_site_23539 DeepMRMD:1;iRNA_m5C:0.999536712159697 23540 chr11 44193288 44193288 1 + C A GBM 44193285 + 44193265 44193305 41 TGAAGAATGGAATGACCCTCCTGCTGTGGTAAGTGAATTCC TGAAGAATGGAATGACCCTCCTGATGTGGTAAGTGAATTCC < 41bp 1 0.482027194524968 1 0.235567897558212 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44193285 chr11:44193288 nonsynonymous SNV 0.900 1 24 hm5C_associated_SNPs_22636 0 0 1 0 2 Endoplasmic reticulum 1 0.500231641476672 1 0.999536717046656 hm5C_site_23540 DeepMRMD:1;iRNA_m5C:0.999536717046656 23541 chr19 39860404 39860404 1 + G T GBM 39860388 + 39860368 39860408 41 TCAGCCAGGCAACACAGAGGCCAAGTCGGAGTACATGAGGC TCAGCCAGGCAACACAGAGGCCAAGTCGGAGTACATTAGGC < 41bp 1 0.140658238693725 1 0.16394630074501 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39860388 chr19:39860404 nonsynonymous SNV 0.994 2 37 hm5C_associated_SNPs_22637 0 0 1 0 0 Ribosome 1 0.500231643934136 1 0.999536712131729 hm5C_site_23541 DeepMRMD:1;iRNA_m5C:0.999536712131729 23542 chrX 135067833 135067833 1 + G A GBM 135067817 + 135067797 135067837 41 GGCGGCGGAGAGGCTAGAGCCATGGACGAGGAGATCGTGTC GGCGGCGGAGAGGCTAGAGCCATGGACGAGGAGATCATGTC < 41bp 1 0.697803409668467 1 0.760688066482544 experiment 0.604393180663066 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135067817 chrX:135067833 nonsynonymous SNV 0.997 0 37 hm5C_associated_SNPs_22638 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.478623867034912 0.999536712157816 hm5C_site_23542 DeepMRMD:0.478623867034912;iRNA_m5C:0.999536712157816 23543 chr15 89849322 89849322 1 + T A GBM 89849336 + 89849316 89849356 41 CATTTTTCCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC CATTTTACCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC < 41bp 1 0.146748229493496 1 0.326030164957047 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89849336 chr15:89849322 nonsynonymous SNV 0.996 2 7 hm5C_associated_SNPs_22639 0 0 1 0 2 Nucleus 1 0.500231533962735 1 0.999536932074531 hm5C_site_23543 DeepMRMD:1;iRNA_m5C:0.999536932074531 23544 chr9 6498120 6498120 1 + G T GBM 6498113 + 6498093 6498133 41 GTTGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACGGTC GTTGAACCTGCTCCTTGGACCTCTGAATGAATAGAACGGTC < 41bp 1 0.359780840096876 1 0.0962094068527222 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498113 chr9:6498120 stopgain 1.000 1 28 hm5C_associated_SNPs_22640 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23544 DeepMRMD:1;iRNA_m5C:0.999536712157815 23545 chr9 6498120 6498120 1 + G T GBM 6498115 + 6498095 6498135 41 TGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACGGTCAA TGAACCTGCTCCTTGGACCTCTGAATGAATAGAACGGTCAA < 41bp 1 0.688012904126492 1 0.772886276245117 experiment 0.623974191747017 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498115 chr9:6498120 stopgain 1.000 1 26 hm5C_associated_SNPs_22641 0 0 1 0 1 Nucleus 1 0.500231643921092 0.454227447509766 0.999536712157815 hm5C_site_23545 DeepMRMD:0.454227447509766;iRNA_m5C:0.999536712157815 23546 chr10 93600321 93600321 1 + C A GBM 93600328 + 93600308 93600348 41 TGTCCTTCAGAAACTGTGTACTGTTCAGAGTGTCAACTGCA TGTCCTTCAGAAAATGTGTACTGTTCAGAGTGTCAACTGCA < 41bp 1 0.0706214796620734 1 0.0288072824478149 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93600328 chr10:93600321 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_22642 0 0 1 0 1 Ribosome 1 0.500232033504845 1 0.999535932990309 hm5C_site_23546 DeepMRMD:1;iRNA_m5C:0.999535932990309 23547 chr7 135333182 135333182 1 + G T GBM 135333200 + 135333180 135333220 41 GAGAATCACTACAAAAGAAACTTCTGGACATTGAAGGATTA GATAATCACTACAAAAGAAACTTCTGGACATTGAAGGATTA < 41bp 1 0.0759965632164197 1 0.181997925043106 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135333200 chr7:135333182 stopgain 1.000 1 3 hm5C_associated_SNPs_22643 0 0 1 1 1 Cytosol 1 0.500231643920287 1 0.999536712159425 hm5C_site_23547 DeepMRMD:1;iRNA_m5C:0.999536712159425 23548 chr3 57994393 57994393 1 + C T GBM 57994397 + 57994377 57994417 41 ACCTCAAGTGCGTGAACAAACGCATCGGCAACCTGCAGACC ACCTCAAGTGCGTGAATAAACGCATCGGCAACCTGCAGACC < 41bp 1 0.400892842061908 1 0.0625122785568237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:57994397 chr3:57994393 synonymous SNV . 0 17 hm5C_associated_SNPs_22644 0 0 0 0 0 Cytosol 1 0.500231806583263 1 0.999536386833474 hm5C_site_23548 DeepMRMD:1;iRNA_m5C:0.999536386833474 23549 chr3 57994393 57994393 1 + C T GBM 57994399 + 57994379 57994419 41 CTCAAGTGCGTGAACAAACGCATCGGCAACCTGCAGACCGA CTCAAGTGCGTGAATAAACGCATCGGCAACCTGCAGACCGA < 41bp 1 0.226050097678218 1 0.102893739938736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:57994399 chr3:57994393 synonymous SNV . 0 15 hm5C_associated_SNPs_22645 0 0 0 0 0 Cytosol 1 0.500231647190986 1 0.999536705618029 hm5C_site_23549 DeepMRMD:1;iRNA_m5C:0.999536705618029 23550 chrX 2641360 2641360 1 + G T GBM 2641365 + 2641345 2641385 41 TGTCTTGCAGGAAAAGGAGGCAGTGATGGTGGAGGCAGCCA TGTCTTGCAGGAAAATGAGGCAGTGATGGTGGAGGCAGCCA < 41bp 1 0.32168110425359 1 0.451893866062164 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2641365 chrX:2641360 stopgain 0.002 0 16 hm5C_associated_SNPs_22646 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23550 DeepMRMD:1;iRNA_m5C:0.999536712157815 23551 chrX 2641360 2641360 1 + G T GBM 2641380 + 2641360 2641400 41 GGAGGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGA TGAGGCAGTGATGGTGGAGGCAGCCACAGGAAAGAAGGGGA < 41bp 1 0.334543927290002 1 0.54912132024765 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2641380 chrX:2641360 stopgain 0.002 0 1 hm5C_associated_SNPs_22647 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164441721 0.9017573595047 0.99953671116558 hm5C_site_23551 DeepMRMD:0.9017573595047;iRNA_m5C:0.99953671116558 23552 chr20 37632428 37632428 1 + C A GBM 37632421 + 37632401 37632441 41 GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACT GAAACTGTTGTGTCGATGCTCATCGAGAAGGCTCGAGCACT < 41bp 1 0.330100512679031 1 0.0897463858127594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632421 chr20:37632428 nonsynonymous SNV 0.896 1 28 hm5C_associated_SNPs_22648 0 0 1 0 1 Endoplasmic reticulum 1 0.50018089774843 1 0.99963820450314 hm5C_site_23552 DeepMRMD:1;iRNA_m5C:0.99963820450314 23553 chr2 192141643 192141643 1 + A T GBM 192141649 + 192141629 192141669 41 AAATGGAGGTGAAAACCTCACTTCTGGACAATATGATTGGA AAATGGAGGTGAAATCCTCACTTCTGGACAATATGATTGGA < 41bp 1 0.215198385555562 1 0.26721778512001 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141649 chr2:192141643 nonsynonymous SNV 0.920 0 15 hm5C_associated_SNPs_22649 0 0 1 0 1 Nucleus 1 0.50023164399562 1 0.99953671200876 hm5C_site_23553 DeepMRMD:1;iRNA_m5C:0.99953671200876 23554 chr15 69737236 69737236 1 + A G GBM 69737220 + 69737200 69737240 41 CAGATGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTG CAGATGGGTAGATCATAAGCCCGCCTCTAACATGCAGACTG < 41bp 1 0.220584075826802 1 0.0433205366134644 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737220 chr15:69737236 synonymous SNV . 0 37 hm5C_associated_SNPs_22650 0 0 0 0 0 Nucleus 1 0.500231643914231 1 0.999536712171537 hm5C_site_23554 DeepMRMD:1;iRNA_m5C:0.999536712171537 23555 chr15 69737236 69737236 1 + A G GBM 69737224 + 69737204 69737244 41 TGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTGAAAC TGGGTAGATCATAAGCCCGCCTCTAACATGCAGACTGAAAC < 41bp 1 0.263935793098235 1 0.262586355209351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737224 chr15:69737236 synonymous SNV . 0 33 hm5C_associated_SNPs_22651 0 0 0 0 0 Nucleus 1 0.500231643921187 1 0.999536712157625 hm5C_site_23555 DeepMRMD:1;iRNA_m5C:0.999536712157625 23556 chr11 65402835 65402835 1 + G A GBM 65402834 + 65402814 65402854 41 CAACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATG CAACACGCCCTCCCTGCTGGCACTGCGCCATGTCCTGGATG < 41bp 1 0.0879763060239635 1 0.0304461419582367 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402834 chr11:65402835 synonymous SNV . 0 22 hm5C_associated_SNPs_22652 0 0 1 0 1 Ribosome 1 0.500231663346797 1 0.999536673306407 hm5C_site_23556 DeepMRMD:1;iRNA_m5C:0.999536673306407 23557 chr11 65402835 65402835 1 + G A GBM 65402836 + 65402816 65402856 41 ACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGAT ACACGCCCTCCCTGCTGGCACTGCGCCATGTCCTGGATGAT < 41bp 1 0.161472167727477 1 0.245578765869141 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402836 chr11:65402835 synonymous SNV . 0 20 hm5C_associated_SNPs_22653 0 0 1 0 1 Ribosome 1 0.500235701923129 1 0.999528596153743 hm5C_site_23557 DeepMRMD:1;iRNA_m5C:0.999528596153743 23558 chr11 65402835 65402835 1 + G A GBM 65402839 + 65402819 65402859 41 CGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCC CGCCCTCCCTGCTGGCACTGCGCCATGTCCTGGATGATGCC < 41bp 1 0.312817056104366 1 0.922525763511658 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402839 chr11:65402835 synonymous SNV . 0 17 hm5C_associated_SNPs_22654 0 0 1 0 1 Ribosome 1 0.500231643921473 0.154948472976684 0.999536712157055 hm5C_site_23558 DeepMRMD:0.154948472976684;iRNA_m5C:0.999536712157055 23559 chr11 65402835 65402835 1 + G A GBM 65402841 + 65402821 65402861 41 CCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTC CCCTCCCTGCTGGCACTGCGCCATGTCCTGGATGATGCCTC < 41bp 1 0.065248134491904 1 0.108941733837128 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402841 chr11:65402835 synonymous SNV . 0 15 hm5C_associated_SNPs_22655 0 0 1 0 1 Ribosome 1 0.500230746579464 1 0.999538506841071 hm5C_site_23559 DeepMRMD:1;iRNA_m5C:0.999538506841071 23560 chr11 65402835 65402835 1 + G A GBM 65402842 + 65402822 65402862 41 CCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTCC CCTCCCTGCTGGCACTGCGCCATGTCCTGGATGATGCCTCC < 41bp 1 0.0703737984774781 1 0.403270244598389 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402842 chr11:65402835 synonymous SNV . 0 14 hm5C_associated_SNPs_22656 0 0 1 0 1 Ribosome 1 0.500231648907835 1 0.999536702184331 hm5C_site_23560 DeepMRMD:1;iRNA_m5C:0.999536702184331 23561 chr14 23239044 23239044 1 + G A GBM 23239030 + 23239010 23239050 41 TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGAGCCAGC < 41bp 1 0.27086887381643 1 0.0369770228862762 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239030 chr14:23239044 nonsynonymous SNV 0.994 3 35 hm5C_associated_SNPs_22657 0 0 1 0 1 Cytosol 1 0.50023164486104 1 0.999536710277921 hm5C_site_23561 DeepMRMD:1;iRNA_m5C:0.999536710277921 23562 chr11 65561705 65561705 1 + C T GBM 65561686 + 65561666 65561706 41 CACTTGACAGACCCCCAGAGCAGAGACCATGGCTTCCTGCG CACTTGACAGACCCCCAGAGCAGAGACCATGGCTTCCTGTG < 41bp 1 0.483294131884482 1 0.551103413105011 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OVOL1 ENSG00000172818 CDS Human protein_coding chr11:65561686 chr11:65561705 nonsynonymous SNV 0.999 1 40 hm5C_associated_SNPs_22658 0 0 0 0 1 exosome 1 0.500231653090871 0.897793173789978 0.999536693818259 hm5C_site_23562 DeepMRMD:0.897793173789978;iRNA_m5C:0.999536693818259 23563 chr1 90473022 90473022 1 + C T GBM 90473035 + 90473015 90473055 41 TGGTGGTCGATTTGAGAGCTCCTACCGGAATAGCCTTGACT TGGTGGTTGATTTGAGAGCTCCTACCGGAATAGCCTTGACT < 41bp 1 0.0669111484839683 1 0.039126455783844 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90473035 chr1:90473022 stopgain 1.000 1 8 hm5C_associated_SNPs_22659 0 0 1 0 0 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_23563 DeepMRMD:1;iRNA_m5C:0.999536712157818 23564 chr1 90473022 90473022 1 + C T GBM 90473036 + 90473016 90473056 41 GGTGGTCGATTTGAGAGCTCCTACCGGAATAGCCTTGACTC GGTGGTTGATTTGAGAGCTCCTACCGGAATAGCCTTGACTC < 41bp 1 0.594481340638885 1 0.307638823986053 experiment 0.81103731872223 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90473036 chr1:90473022 stopgain 1.000 1 7 hm5C_associated_SNPs_22660 0 0 1 0 0 Cytosol 1 0.500231601736149 1 0.999536796527703 hm5C_site_23564 DeepMRMD:1;iRNA_m5C:0.999536796527703 23565 chrX 69519003 69519003 1 + G A GBM 69519014 + 69518994 69519034 41 GCCCATCTCGTGAGAAAGCTCAAATAAATATACGAGAGGAT GCCCATCTCATGAGAAAGCTCAAATAAATATACGAGAGGAT < 41bp 1 0.124845844573048 1 0.260612726211548 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69519014 chrX:69519003 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_22661 0 0 0 0 2 chromatin 1 0.500231644214222 1 0.999536711571556 hm5C_site_23565 DeepMRMD:1;iRNA_m5C:0.999536711571556 23566 chr16 68373351 68373351 1 + G A GBM 68373342 + 68373322 68373362 41 TGCAGACCAGCCTCGGAGAGCAGGTCATCGTCCCTCCCGTT TGCAGACCAGCCTCGGAGAGCAGGTCATCATCCCTCCCGTT < 41bp 1 0.615524017956243 1 0.5197873711586 experiment 0.768951964087513 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68373342 chr16:68373351 nonsynonymous SNV 0.290 0 30 hm5C_associated_SNPs_22662 0 0 1 0 0 Nucleus 1 0.500231643921092 0.9604252576828 0.999536712157815 hm5C_site_23566 DeepMRMD:0.9604252576828;iRNA_m5C:0.999536712157815 23567 chr2 38908538 38908538 1 + C T GBM 38908545 + 38908525 38908565 41 ACACCCTGGATGGCGGAGAGCTCATAGTCAACTACAGAGCA ACACCCTGGATGGTGGAGAGCTCATAGTCAACTACAGAGCA < 41bp 1 0.307888666524754 1 0.0449953377246857 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908545 chr2:38908538 synonymous SNV . 0 14 hm5C_associated_SNPs_22663 0 0 0 0 1 Ribosome 1 0.500229428242396 1 0.999541143515209 hm5C_site_23567 DeepMRMD:1;iRNA_m5C:0.999541143515209 23568 chr11 113126681 113126681 1 + C T GBM 113126689 + 113126669 113126709 41 CAAGCAGGATGACGGCGGCTCCCCCATCAGACACTATCTGG CAAGCAGGATGATGGCGGCTCCCCCATCAGACACTATCTGG < 41bp 1 0.086093723272323 1 0.0662932693958282 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113126689 chr11:113126681 synonymous SNV . 0 13 hm5C_associated_SNPs_22664 0 0 0 0 1 Ribosome 1 0.500231643921214 1 0.999536712157571 hm5C_site_23568 DeepMRMD:1;iRNA_m5C:0.999536712157571 23569 chr6 42974763 42974763 1 + G A GBM 42974762 + 42974742 42974782 41 TCAAATTCAAGGAGGTGAAGCGGGCAGGACTCAACGAGATG TCAAATTCAAGGAGGTGAAGCAGGCAGGACTCAACGAGATG < 41bp 1 0.540050473667842 1 0.446137964725494 experiment 0.919899052664317 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974762 chr6:42974763 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_22666 0 0 1 0 2 Ribosome 1 0.500231643436221 1 0.999536713127558 hm5C_site_23569 DeepMRMD:1;iRNA_m5C:0.999536713127558 23570 chr6 42974763 42974763 1 + G A GBM 42974771 + 42974751 42974791 41 AGGAGGTGAAGCGGGCAGGACTCAACGAGATGGTGGAGTAC AGGAGGTGAAGCAGGCAGGACTCAACGAGATGGTGGAGTAC < 41bp 1 0.584317655248648 1 0.796674728393555 experiment 0.831364689502704 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974771 chr6:42974763 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_22667 0 0 1 0 2 Ribosome 1 0.500228431655898 0.40665054321289 0.999543136688203 hm5C_site_23570 DeepMRMD:0.40665054321289;iRNA_m5C:0.999543136688203 23571 chr19 42796588 42796588 1 + G A GBM 42796582 + 42796562 42796602 41 TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTG TAGGCTTCACCTCGCTGGGGCCCAGCAGCCCCGCCTTCGTG < 41bp 1 0.0564389288425103 1 0.0940048396587372 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796582 chr19:42796588 nonsynonymous SNV 0.919 4 27 hm5C_associated_SNPs_22670 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23571 DeepMRMD:1;iRNA_m5C:0.999536712157815 23572 chr19 42796588 42796588 1 + G A GBM 42796583 + 42796563 42796603 41 AGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGC AGGCTTCACCTCGCTGGGGCCCAGCAGCCCCGCCTTCGTGC < 41bp 1 0.123376450697542 1 0.209338039159775 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796583 chr19:42796588 nonsynonymous SNV 0.919 4 26 hm5C_associated_SNPs_22671 0 0 0 0 1 Cytosol 1 0.50023164392111 1 0.999536712157781 hm5C_site_23572 DeepMRMD:1;iRNA_m5C:0.999536712157781 23573 chr19 42796588 42796588 1 + G A GBM 42796590 + 42796570 42796610 41 ACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCT ACCTCGCTGGGGCCCAGCAGCCCCGCCTTCGTGCAGCCCCT < 41bp 1 0.218026878298868 1 0.237317442893982 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796590 chr19:42796588 nonsynonymous SNV 0.919 4 19 hm5C_associated_SNPs_22672 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23573 DeepMRMD:1;iRNA_m5C:0.999536712157815 23574 chr19 42796588 42796588 1 + G A GBM 42796591 + 42796571 42796611 41 CCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTG CCTCGCTGGGGCCCAGCAGCCCCGCCTTCGTGCAGCCCCTG < 41bp 1 0.27325882251123 1 0.122922658920288 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796591 chr19:42796588 nonsynonymous SNV 0.919 4 18 hm5C_associated_SNPs_22673 0 0 0 0 1 Cytosol 1 0.500231643923186 1 0.999536712153627 hm5C_site_23574 DeepMRMD:1;iRNA_m5C:0.999536712153627 23575 chr19 42796588 42796588 1 + G A GBM 42796592 + 42796572 42796612 41 CTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGC CTCGCTGGGGCCCAGCAGCCCCGCCTTCGTGCAGCCCCTGC < 41bp 1 0.186184378330938 1 0.106479585170746 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796592 chr19:42796588 nonsynonymous SNV 0.919 4 17 hm5C_associated_SNPs_22674 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23575 DeepMRMD:1;iRNA_m5C:0.999536712157815 23576 chr19 42796588 42796588 1 + G A GBM 42796593 + 42796573 42796613 41 TCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGCT TCGCTGGGGCCCAGCAGCCCCGCCTTCGTGCAGCCCCTGCT < 41bp 1 0.329896349842237 1 0.3144411444664 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796593 chr19:42796588 nonsynonymous SNV 0.919 4 16 hm5C_associated_SNPs_22675 0 0 0 0 1 Cytosol 1 0.500232025277215 1 0.99953594944557 hm5C_site_23576 DeepMRMD:1;iRNA_m5C:0.99953594944557 23577 chr10 96162374 96162374 1 + G A GBM 96162358 + 96162338 96162378 41 TTGCCTCCTGGGGCGGCCGCCACCCACCCCCAGATGGTGGG TTGCCTCCTGGGGCGGCCGCCACCCACCCCCAGATGATGGG < 41bp 1 0.440324753330938 1 0.338912963867188 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D12 ENSG00000108239 CDS Human protein_coding chr10:96162358 chr10:96162374 nonsynonymous SNV 0.965 0 37 hm5C_associated_SNPs_22676 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_23577 DeepMRMD:1;iRNA_m5C:0.999536712157815 23578 chr3 8607236 8607236 1 + C T GBM 8607252 + 8607232 8607272 41 GAGCCGCTGGTGGACCTCATCTACTTCTGGAAGGATGGTGC GAGCTGCTGGTGGACCTCATCTACTTCTGGAAGGATGGTGC < 41bp 1 0.576190949425166 1 0.679127156734467 experiment 0.847618101149667 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8607252 chr3:8607236 nonsynonymous SNV 0.975 3 5 hm5C_associated_SNPs_22677 0 0 0 0 1 exosome 1 0.500231764639522 0.641745686531066 0.999536470720955 hm5C_site_23578 DeepMRMD:0.641745686531066;iRNA_m5C:0.999536470720955 23579 chr19 39944053 39944053 1 + G A GBM 39944044 + 39944024 39944064 41 GCAGTGAGAAAGAAGAAGAGCCTGAGGACGAAGAGGAGGAG GCAGTGAGAAAGAAGAAGAGCCTGAGGACAAAGAGGAGGAG < 41bp 1 0.30581904235062 1 0.14451140165329 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944044 chr19:39944053 nonsynonymous SNV 0.976 2 30 hm5C_associated_SNPs_22678 0 0 1 0 1 Nucleus 1 0.50023164392688 1 0.999536712146239 hm5C_site_23579 DeepMRMD:1;iRNA_m5C:0.999536712146239 23580 chr3 124160808 124160808 1 + G A GBM 124160800 + 124160780 124160820 41 TGTCTTTCGCAGGCCTGCACCCTGGCTCGGCGGAATGCTGA TGTCTTTCGCAGGCCTGCACCCTGGCTCAGCGGAATGCTGA < 41bp 1 0.105319015147625 1 0.356142401695251 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KALRN ENSG00000160145 CDS Human protein_coding chr3:124160800 chr3:124160808 nonsynonymous SNV 0.747 3 29 hm5C_associated_SNPs_22679 0 0 0 0 2 nucleoplasm 1 0.500231644169428 1 0.999536711661144 hm5C_site_23580 DeepMRMD:1;iRNA_m5C:0.999536711661144 23581 chrX 47102865 47102865 1 + C T GBM 47102871 + 47102851 47102891 41 TTCCTGTCTACCTGCGGGAGCGCACCCCTGCCCGTGACTAC TTCCTGTCTACCTGTGGGAGCGCACCCCTGCCCGTGACTAC < 41bp 1 0.139415954579793 1 0.144634395837784 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47102871 chrX:47102865 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_22680 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23581 DeepMRMD:1;iRNA_m5C:0.999536712157815 23582 chr13 76382216 76382216 1 + A T GBM 76382234 + 76382214 76382254 41 GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCTG GGTACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCTG < 41bp 1 0.313104503665693 1 0.794584989547729 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76382234 chr13:76382216 synonymous SNV . 0 3 hm5C_associated_SNPs_22681 0 0 0 0 0 Cytosol 1 0.500231643921092 0.410830020904542 0.999536712157815 hm5C_site_23582 DeepMRMD:0.410830020904542;iRNA_m5C:0.999536712157815 23583 chr19 39944022 39944022 1 + G A GBM 39944021 + 39944001 39944041 41 CGAAGAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAG CGAAGAGCGGCGGAGTGCAGCAGGCAGTGAGAAAGAAGAAG < 41bp 1 0.57748492933296 1 0.806784451007843 experiment 0.84503014133408 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944021 chr19:39944022 synonymous SNV . 0 22 hm5C_associated_SNPs_22682 0 0 1 0 1 Nucleus 1 0.500231643930636 0.386431097984314 0.999536712138729 hm5C_site_23583 DeepMRMD:0.386431097984314;iRNA_m5C:0.999536712138729 23584 chr19 39944022 39944022 1 + G A GBM 39944025 + 39944005 39944045 41 GAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC GAGCGGCGGAGTGCAGCAGGCAGTGAGAAAGAAGAAGAGCC < 41bp 1 0.445755155830932 1 0.612486600875854 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944025 chr19:39944022 synonymous SNV . 0 18 hm5C_associated_SNPs_22683 0 0 1 0 1 Nucleus 1 0.500231643921097 0.775026798248292 0.999536712157806 hm5C_site_23584 DeepMRMD:0.775026798248292;iRNA_m5C:0.999536712157806 23585 chr1 117638845 117638845 1 + C T GBM 117638864 + 117638844 117638884 41 GCCACCATCGATGGCTCTGTCAATCCCAAGCAGAGAATGGA GTCACCATCGATGGCTCTGTCAATCCCAAGCAGAGAATGGA < 41bp 1 0.119947459019403 1 0.370049595832825 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117638864 chr1:117638845 nonsynonymous SNV 0.998 1 2 hm5C_associated_SNPs_22684 0 0 1 0 1 Nucleus 1 0.500231643917421 1 0.999536712165158 hm5C_site_23585 DeepMRMD:1;iRNA_m5C:0.999536712165158 23586 chr1 46871972 46871972 1 + C T GBM 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC TGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC < 41bp 1 0.399555521263078 1 0.0904349386692047 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46871972 stopgain 0.670 0 1 hm5C_associated_SNPs_22685 0 0 0 0 2 Ribosome 1 0.500231648667884 1 0.999536702664231 hm5C_site_23586 DeepMRMD:1;iRNA_m5C:0.999536702664231 23587 chr11 45923593 45923593 1 + A T GBM 45923602 + 45923582 45923622 41 GTGTCTCGATCATCCTCACCCCTGAAGACAGGTAAGTCAGG GTGTCTCGATCTTCCTCACCCCTGAAGACAGGTAAGTCAGG < 41bp 1 0.11873340449785 1 0.247918605804443 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923602 chr11:45923593 synonymous SNV . 0 12 hm5C_associated_SNPs_22686 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_23587 DeepMRMD:1;iRNA_m5C:0.999536712157818 23588 chr12 14577544 14577544 1 + G T GBM 14577553 + 14577533 14577573 41 TATAGCCTCTAGTGAAATAACTTCTGTTGATCTGGCTTCTG TATAGCCTCTATTGAAATAACTTCTGTTGATCTGGCTTCTG < 41bp 1 0.421331093605921 1 0.0397110879421234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14577553 chr12:14577544 nonsynonymous SNV 0.047 1 12 hm5C_associated_SNPs_22687 0 0 1 0 0 Cytosol 1 0.500231643983955 1 0.999536712032089 hm5C_site_23588 DeepMRMD:1;iRNA_m5C:0.999536712032089 23589 chr12 14577544 14577544 1 + G T GBM 14577556 + 14577536 14577576 41 AGCCTCTAGTGAAATAACTTCTGTTGATCTGGCTTCTGGAG AGCCTCTATTGAAATAACTTCTGTTGATCTGGCTTCTGGAG < 41bp 1 0.277165696863965 1 0.0738688111305237 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14577556 chr12:14577544 nonsynonymous SNV 0.047 1 9 hm5C_associated_SNPs_22688 0 0 1 0 0 Cytosol 1 0.500231631770423 1 0.999536736459154 hm5C_site_23589 DeepMRMD:1;iRNA_m5C:0.999536736459154 23590 chr17 21319359 21319359 1 + G A GBM 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCACGGG < 41bp 1 0.619731265153708 1 0.470512837171555 experiment 0.760537469692583 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319359 synonymous SNV . 0 37 hm5C_associated_SNPs_22689 0 0 0 0 0 unknown 1 0.500231647963383 1 0.999536704073233 hm5C_site_23590 DeepMRMD:1;iRNA_m5C:0.999536704073233 23591 chr17 81042984 81042984 1 + C T GBM 81042993 + 81042973 81043013 41 CTTCACGGACTCCTCGGGGGCCAATATTTATTTGGAAAAAA CTTCACGGACTTCTCGGGGGCCAATATTTATTTGGAAAAAA < 41bp 1 0.0337273302589825 1 0.0668265819549561 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METRNL ENSG00000176845 CDS Human protein_coding chr17:81042993 chr17:81042984 nonsynonymous SNV 0.974 3 12 hm5C_associated_SNPs_22690 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23591 DeepMRMD:1;iRNA_m5C:0.999536712157815 23592 chr8 28574483 28574483 1 + T C GBM 28574488 + 28574468 28574508 41 GTGGCCCAGTCCACCTTCTACACTGTCCAGTACAGACCTGG GTGGCCCAGTCCACCCTCTACACTGTCCAGTACAGACCTGG < 41bp 1 0.194353977029339 1 0.0679351389408112 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28574488 chr8:28574483 nonsynonymous SNV 0.955 4 16 hm5C_associated_SNPs_22691 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644184018 1 0.999536711631963 hm5C_site_23592 DeepMRMD:1;iRNA_m5C:0.999536711631963 23593 chr15 41554976 41554976 1 + G A GBM 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTAGATTCATGCGAACTTTGGCTCATTTCCGC < 41bp 1 0.211711661700155 1 0.186836272478104 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41554976 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_22692 0 0 1 0 1 Ribosome 1 0.500231644002535 1 0.99953671199493 hm5C_site_23593 DeepMRMD:1;iRNA_m5C:0.99953671199493 23594 chr19 10886491 10886491 1 + G A GBM 10886497 + 10886477 10886517 41 CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAC CAGTTCATCAGCCGAGAGAGCAGCCTCATTCTGGCTGTCAC < 41bp 1 0.216349751467003 1 0.122377097606659 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886497 chr19:10886491 synonymous SNV . 0 15 hm5C_associated_SNPs_22693 0 0 1 1 1 Nucleus 1 0.500231657344986 1 0.999536685310028 hm5C_site_23594 DeepMRMD:1;iRNA_m5C:0.999536685310028 23595 chr9 116750662 116750662 1 + G A GBM 116750645 + 116750625 116750665 41 GAGCACCAAGGTGGAGGGCCCAGAGCCAGTGCCAGCCGAGG GAGCACCAAGGTGGAGGGCCCAGAGCCAGTGCCAGCCAAGG < 41bp 1 0.39055903579006 1 0.397984981536865 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116750645 chr9:116750662 nonsynonymous SNV 0.785 0 38 hm5C_associated_SNPs_22694 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23595 DeepMRMD:1;iRNA_m5C:0.999536712157815 23596 chr19 7676675 7676675 1 + G A GBM 7676663 + 7676643 7676683 41 GGAGACCCTGTGCTCCTCCGCTCTGTGAGCTCGGACAGCCT GGAGACCCTGTGCTCCTCCGCTCTGTGAGCTCAGACAGCCT < 41bp 1 0.28202494998248 1 0.180278867483139 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7676663 chr19:7676675 synonymous SNV . 0 33 hm5C_associated_SNPs_22695 0 0 1 0 0 nucleus 1 0.500231643905604 1 0.999536712188792 hm5C_site_23596 DeepMRMD:1;iRNA_m5C:0.999536712188792 23597 chr19 34868415 34868415 1 + G A GBM 34868408 + 34868388 34868428 41 CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGG CATCTTCGCCCCTGTGCCAGCGTGTCCAGAGCGGTGACTGG < 41bp 1 0.218274852404006 1 0.591677308082581 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868408 chr19:34868415 nonsynonymous SNV 0.986 4 28 hm5C_associated_SNPs_22696 0 0 1 0 1 Ribosome 1 0.500231643921092 0.816645383834838 0.999536712157815 hm5C_site_23597 DeepMRMD:0.816645383834838;iRNA_m5C:0.999536712157815 23598 chr19 34868415 34868415 1 + G A GBM 34868413 + 34868393 34868433 41 TCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGGAAGGG TCGCCCCTGTGCCAGCGTGTCCAGAGCGGTGACTGGAAGGG < 41bp 1 0.568260970176269 1 0.407204896211624 experiment 0.863478059647462 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868413 chr19:34868415 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_22697 0 0 1 0 1 Ribosome 1 0.500231643922284 1 0.999536712155432 hm5C_site_23598 DeepMRMD:1;iRNA_m5C:0.999536712155432 23599 chr6 30857024 30857024 1 + G A GBM 30857005 + 30856985 30857025 41 GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCGG GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCAG < 41bp 1 0.298583534708145 1 0.310500621795654 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30857005 chr6:30857024 synonymous SNV . 0 40 hm5C_associated_SNPs_22698 0 0 1 0 1 Ribosome 1 0.500231643924951 1 0.999536712150098 hm5C_site_23599 DeepMRMD:1;iRNA_m5C:0.999536712150098 23600 chr2 242431066 242431066 1 + C A GBM 242431077 + 242431057 242431097 41 CCAGCGTGTCCAGGGCAGACCACAGTGCAGCTGTCGAGGTA CCAGCGTGTACAGGGCAGACCACAGTGCAGCTGTCGAGGTA < 41bp 1 0.574516597496385 1 0.190668076276779 experiment 0.85096680500723 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242431077 chr2:242431066 nonsynonymous SNV 0.984 4 10 hm5C_associated_SNPs_22699 0 0 1 0 1 Nucleus 1 0.500231643869026 1 0.999536712261947 hm5C_site_23600 DeepMRMD:1;iRNA_m5C:0.999536712261947 23601 chr9 35846887 35846887 1 + G A GBM 35846905 + 35846885 35846925 41 CTGCTCTGCCTGAGCAACCTCATGTTTCTGCCACCTGTGGT CTACTCTGCCTGAGCAACCTCATGTTTCTGCCACCTGTGGT < 41bp 1 0.279378527372277 1 0.412525296211243 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35846905 chr9:35846887 synonymous SNV . 0 3 hm5C_associated_SNPs_22700 0 0 1 0 0 cytosol 1 0.500231634924499 1 0.999536730151003 hm5C_site_23601 DeepMRMD:1;iRNA_m5C:0.999536730151003 23602 chr1 147091673 147091673 1 + C G GBM 147091688 + 147091668 147091708 41 AAACTCTGAAATGGAAGGGCCGAATGTCCCCAACCCTGCAT AAACTGTGAAATGGAAGGGCCGAATGTCCCCAACCCTGCAT < 41bp 1 0.234847671810323 1 0.156565189361572 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCL9 ENSG00000116128 CDS Human protein_coding chr1:147091688 chr1:147091673 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_22703 0 0 1 0 0 Nucleus 1 0.500231643921089 1 0.999536712157822 hm5C_site_23602 DeepMRMD:1;iRNA_m5C:0.999536712157822 23603 chr10 6265943 6265943 1 + C T GBM 6265930 + 6265910 6265950 41 TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTCTTC TTCAATTTCAGAGGAGATGCCCTACCTGAAATGTCCTCTTC < 41bp 1 0.0376338096122034 1 0.0417560636997223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6265930 chr10:6265943 synonymous SNV . 0 34 hm5C_associated_SNPs_22706 0 0 1 0 2 Ribosome 1 0.50022984612139 1 0.999540307757221 hm5C_site_23603 DeepMRMD:1;iRNA_m5C:0.999540307757221 23604 chr15 78838067 78838067 1 + C T GBM 78838052 + 78838032 78838072 41 TTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGG TTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTATGGGGG < 41bp 1 0.547878959369124 1 0.0918323397636414 experiment 0.904242081261751 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78838052 chr15:78838067 synonymous SNV . 0 36 hm5C_associated_SNPs_22707 0 0 1 0 2 Ribosome 1 0.500231643921149 1 0.999536712157701 hm5C_site_23604 DeepMRMD:1;iRNA_m5C:0.999536712157701 23605 chr15 78838067 78838067 1 + C T GBM 78838053 + 78838033 78838073 41 TTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGA TTCAGCTCTATCAGAGTGACCCTAGTGGAAATTATGGGGGA < 41bp 1 0.218995414603346 1 0.136565089225769 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78838053 chr15:78838067 synonymous SNV . 0 35 hm5C_associated_SNPs_22708 0 0 1 0 2 Ribosome 1 0.500231643979658 1 0.999536712040683 hm5C_site_23605 DeepMRMD:1;iRNA_m5C:0.999536712040683 23606 chr15 78838067 78838067 1 + C T GBM 78838054 + 78838034 78838074 41 TCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGAT TCAGCTCTATCAGAGTGACCCTAGTGGAAATTATGGGGGAT < 41bp 1 0.66564434581275 1 0.114345341920853 experiment 0.6687113083745 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78838054 chr15:78838067 synonymous SNV . 0 34 hm5C_associated_SNPs_22709 0 0 1 0 2 Ribosome 1 0.500231643921137 1 0.999536712157725 hm5C_site_23606 DeepMRMD:1;iRNA_m5C:0.999536712157725 23607 chr19 33202795 33202795 1 + G A GBM 33202807 + 33202787 33202827 41 ATATCCACGTGACTGTTCAGCCAAAGTATAAACACGTTTAT ATATCCACATGACTGTTCAGCCAAAGTATAAACACGTTTAT < 41bp 1 0.260442057484818 1 0.0840199887752533 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUDT19 ENSG00000213965 CDS Human protein_coding chr19:33202807 chr19:33202795 nonsynonymous SNV 0.343 1 9 hm5C_associated_SNPs_22710 0 0 1 0 0 Ribosome 1 0.500183620987605 1 0.999632758024789 hm5C_site_23607 DeepMRMD:1;iRNA_m5C:0.999632758024789 23608 chr12 53516970 53516970 1 + G A GBM 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCCTGGGGTTCTTCTATCCCATCATGCTGAT < 41bp 1 0.144469106640876 1 0.0318364202976227 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516970 nonsynonymous SNV 0.996 0 31 hm5C_associated_SNPs_22711 0 0 0 0 1 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_23608 DeepMRMD:1;iRNA_m5C:0.999536712157815 23609 chr1 110561677 110561677 1 + G A GBM 110561676 + 110561656 110561696 41 CTCTCTTACCTTTCCAGGGTCGTCTACTCAATTTGAGCTGC CTCTCTTACCTTTCCAGGGTCATCTACTCAATTTGAGCTGC < 41bp 1 0.110972494006931 1 0.0448278486728668 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110561676 chr1:110561677 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_22713 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23609 DeepMRMD:1;iRNA_m5C:0.999536712157815 23610 chr4 8294059 8294059 1 + C T GBM 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTACGGGAACTCTGGGGGACCACTGGTGAACCTGGTAAGTG < 41bp 1 0.388311710601752 1 0.361923515796661 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294059 synonymous SNV . 0 13 hm5C_associated_SNPs_22714 0 0 0 0 2 exosome 1 0.500231474472735 1 0.999537051054531 hm5C_site_23610 DeepMRMD:1;iRNA_m5C:0.999537051054531 23611 chr19 10823284 10823284 1 + G A GBM 10823292 + 10823272 10823312 41 ATGTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT ATGTTCGACTGCATCTTCCCCACACGGACAGCGGTGAGGCT < 41bp 1 0.188370266570212 1 0.0784645080566406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823292 chr19:10823284 nonsynonymous SNV 0.953 3 13 hm5C_associated_SNPs_22715 0 0 1 0 2 Ribosome 1 0.500232012978667 1 0.999535974042666 hm5C_site_23611 DeepMRMD:1;iRNA_m5C:0.999535974042666 23612 chr1 63282295 63282295 1 + C T GBM 63282293 + 63282273 63282313 41 CGGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA CGGGATGTACAATAGAGGATCATGTAATTGCAGGAAATGTA < 41bp 1 0.19878494114356 1 0.083753377199173 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4C ENSG00000125703 CDS Human protein_coding chr1:63282293 chr1:63282295 synonymous SNV . 0 23 hm5C_associated_SNPs_22716 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23612 DeepMRMD:1;iRNA_m5C:0.999536712157815 23613 chr2 9621457 9621457 1 + C T GBM 9621454 + 9621434 9621474 41 CATTCCCCTGGAGGAGTACGCTGCGAACCTAAAGAGCATGG CATTCCCCTGGAGGAGTACGCTGTGAACCTAAAGAGCATGG < 41bp 1 0.672363570411505 1 0.176544576883316 experiment 0.65527285917699 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IAH1 ENSG00000134330 CDS Human protein_coding chr2:9621454 chr2:9621457 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_22717 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23613 DeepMRMD:1;iRNA_m5C:0.999536712157815 23614 chr17 47119680 47119680 1 + G A GBM 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATCGAGAATTGTTGCAGGGCCAAGCAGGAAATAATGAAGA < 41bp 1 0.0792972374781506 1 0.24129530787468 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119680 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_22718 0 0 1 0 1 Ribosome 1 0.500231644373159 1 0.999536711253682 hm5C_site_23614 DeepMRMD:1;iRNA_m5C:0.999536711253682 23615 chr17 47119680 47119680 1 + G A GBM 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATCGAGAATTGTTGCAGGGCCAAGCAGGAAATAATGAAGAA < 41bp 1 0.298415086603104 1 0.253014177083969 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119680 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_22719 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_23615 DeepMRMD:1;iRNA_m5C:0.999536712157815 23616 chr3 52325024 52325024 1 + G A GBM 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCAGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG < 41bp 1 0.588241286294685 1 0.786017179489136 experiment 0.823517427410629 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325024 synonymous SNV . 0 7 hm5C_associated_SNPs_22720 0 0 1 0 1 chromatin 1 0.500231643921094 0.427965641021728 0.999536712157813 hm5C_site_23616 DeepMRMD:0.427965641021728;iRNA_m5C:0.999536712157813 23617 chr4 154216632 154216632 1 + G A GBM 154216623 + 154216603 154216643 41 AACGAGCTGGCCGACCAGGACTTCCCCTTGCACCCGCGGGA AACGAGCTGGCCGACCAGGACTTCCCCTTACACCCGCGGGA < 41bp 1 0.121802078416538 1 0.0656720995903015 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154216623 chr4:154216632 synonymous SNV . 0 30 hm5C_associated_SNPs_22721 0 0 1 0 0 Ribosome 1 0.500231642371023 1 0.999536715257954 hm5C_site_23617 DeepMRMD:1;iRNA_m5C:0.999536715257954 23618 chr1 977058 977058 1 + C T GBM 977045 + 977025 977065 41 GGGGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGG GGGGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGTGCTCCGG < 41bp 1 0.100250629716647 1 0.50959575176239 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:977045 chr1:977058 nonsynonymous SNV 0.946 3 34 hm5C_associated_SNPs_22724 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.98080849647522 0.999536712157815 hm5C_site_23618 DeepMRMD:0.98080849647522;iRNA_m5C:0.999536712157815 23619 chr8 124219785 124219785 1 + C T GBM 124219776 + 124219756 124219796 41 CCCCGAGTCCCCAGGCCCACCTCTCCCCGCGGCCCCACGAC CCCCGAGTCCCCAGGCCCACCTCTCCCCGTGGCCCCACGAC < 41bp 1 0.174898339958376 1 0.357926160097122 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM83A ENSG00000147689 CDS Human protein_coding chr8:124219776 chr8:124219785 nonsynonymous SNV 0.052 3 30 hm5C_associated_SNPs_22725 0 0 1 0 0 Cytosol 1 0.500231643917107 1 0.999536712165786 hm5C_site_23619 DeepMRMD:1;iRNA_m5C:0.999536712165786 23620 chr10 43604497 43604497 1 + A T GBM 43604501 + 43604481 43604521 41 CTGGTTCTCAACCGGAACCTCTCCATCTCGGAGAACCGCAC CTGGTTCTCAACCGGATCCTCTCCATCTCGGAGAACCGCAC < 41bp 1 0.67097969763625 1 0.943675637245178 experiment 0.6580406047275 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RET ENSG00000165731 CDS Human protein_coding chr10:43604501 chr10:43604497 nonsynonymous SNV 0.257 2 17 hm5C_associated_SNPs_22726 0 0 1 0 1 Cytosol 1 0.500231643907773 0.112648725509644 0.999536712184454 hm5C_site_23620 DeepMRMD:0.112648725509644;iRNA_m5C:0.999536712184454 23621 chr1 116940613 116940613 1 + A G GBM 116940615 + 116940595 116940635 41 GAGATAGTGTTTGCCAGGACCTCCCCTCAGCAGAAGCTCAT GAGATAGTGTTTGCCAGGGCCTCCCCTCAGCAGAAGCTCAT < 41bp 1 0.199482733882505 1 0.128271877765656 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116940615 chr1:116940613 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_22727 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_23621 DeepMRMD:1;iRNA_m5C:0.999536712157812 23622 chr2 67631720 67631720 1 + A T GBM 67631731 + 67631711 67631751 41 TCAGAAAGTATATGTGAGATCAATAATAATTCCGAACATGG TCAGAAAGTTTATGTGAGATCAATAATAATTCCGAACATGG < 41bp 1 0.552660633895976 1 0.0763692557811737 experiment 0.894678732208048 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETAA1 ENSG00000143971 CDS Human protein_coding chr2:67631731 chr2:67631720 nonsynonymous SNV 0.975 0 10 hm5C_associated_SNPs_22728 0 0 0 0 0 nucleolus 1 0.500231643921092 1 0.999536712157816 hm5C_site_23622 DeepMRMD:1;iRNA_m5C:0.999536712157816 23623 chr15 64966530 64966530 1 + G A GBM 64966550 + 64966530 64966570 41 GTCCTAATTGACTGTCCCCACCCAAACTGCAACAAGAAGTA ATCCTAATTGACTGTCCCCACCCAAACTGCAACAAGAAGTA < 41bp 1 0.185855514582604 1 0.416562080383301 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF609 ENSG00000180357 CDS Human protein_coding chr15:64966550 chr15:64966530 nonsynonymous SNV 0.995 1 1 hm5C_associated_SNPs_22729 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157812 hm5C_site_23623 DeepMRMD:1;iRNA_m5C:0.999536712157812 23624 chr1 179876983 179876983 1 + G A GBM 179876984 + 179876964 179877004 41 ACTTCACAGCTCATGATAAGCAACCTTCAGTGCTAAGTAAG ACTTCACAGCTCATGATAAACAACCTTCAGTGCTAAGTAAG < 41bp 1 0.32938749922356 1 0.203705281019211 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOR1AIP1 ENSG00000143337 CDS Human protein_coding chr1:179876984 chr1:179876983 synonymous SNV . 0 20 hm5C_associated_SNPs_22730 0 0 1 0 2 Endoplasmic reticulum 1 0.500231638856474 1 0.999536722287053 hm5C_site_23624 DeepMRMD:1;iRNA_m5C:0.999536722287053 23625 chr22 25019109 25019109 1 + C T GBM 25019089 + 25019069 25019109 41 TGCAGGGGGCATTGTGACAGCTGAGGACCTGAACAACTACC TGCAGGGGGCATTGTGACAGCTGAGGACCTGAACAACTACT < 41bp 1 0.518409172292761 1 0.334731221199036 experiment 0.963181655414477 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GGT1 ENSG00000100031 CDS Human protein_coding chr22:25019089 chr22:25019109 nonsynonymous SNV 0.912 1 41 hm5C_associated_SNPs_22731 0 0 0 0 1 exosome 1 0.500231643921158 1 0.999536712157684 hm5C_site_23625 DeepMRMD:1;iRNA_m5C:0.999536712157684 23626 chr19 48954443 48954443 1 + C T GBM 48954428 + 48954408 48954448 41 AGCTGGAGCCGCCGGGAGCCCTTCCTGCTCAGTGGCGGGGA AGCTGGAGCCGCCGGGAGCCCTTCCTGCTCAGTGGTGGGGA < 41bp 1 0.232245655739985 1 0.341845214366913 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRWD1 ENSG00000105447 CDS Human protein_coding chr19:48954428 chr19:48954443 synonymous SNV . 0 36 hm5C_associated_SNPs_22732 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23626 DeepMRMD:1;iRNA_m5C:0.999536712157815 23627 chr7 128486412 128486412 1 + G A GBM 128486405 + 128486385 128486425 41 AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC AGGTCGCTGTGCCCAAGAGCCCCTTCCAAGTGGGCGTGACC < 41bp 1 0.0207994257200362 1 0.0403722822666168 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486405 chr7:128486412 nonsynonymous SNV 0.991 3 28 hm5C_associated_SNPs_22733 1 0 1 0 1 chromatin 1 0.500231643923297 1 0.999536712153406 hm5C_site_23627 DeepMRMD:1;iRNA_m5C:0.999536712153406 not specified not specified 23628 chr12 111072571 111072571 1 + C T GBM 111072570 + 111072550 111072590 41 GCATGGCTTTTTACAGCAGCCCGGAAATTCTGAGGGTAAGA GCATGGCTTTTTACAGCAGCCTGGAAATTCTGAGGGTAAGA < 41bp 1 0.620362030808678 1 0.258451461791992 experiment 0.759275938382645 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111072570 chr12:111072571 nonsynonymous SNV 0.974 0 22 hm5C_associated_SNPs_22734 0 0 1 0 0 chromatin 1 0.500231638015242 1 0.999536723969516 hm5C_site_23628 DeepMRMD:1;iRNA_m5C:0.999536723969516 23629 chr17 79990839 79990839 1 + G A GBM 79990825 + 79990805 79990845 41 TCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTGCTTCTC TCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTACTTCTC < 41bp 1 0.180165786305939 1 0.056683748960495 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990825 chr17:79990839 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_22735 0 0 1 0 2 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_23629 DeepMRMD:1;iRNA_m5C:0.999536712157817 23630 chr12 132547129 132547129 1 + G A GBM 132547130 + 132547110 132547150 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG AGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAGCAG < 41bp 1 0.575857873334105 1 0.743201673030853 experiment 0.848284253331789 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132547130 chr12:132547129 synonymous SNV . 0 20 hm5C_associated_SNPs_22736 0 0 0 0 0 Cytosol 1 0.500233104017917 0.513596653938294 0.999533791964166 hm5C_site_23630 DeepMRMD:0.513596653938294;iRNA_m5C:0.999533791964166 23631 chr7 44148536 44148536 1 + G A GBM 44148521 + 44148501 44148541 41 ACTATTACTTTGGGCCTCCTCCGCCCCAGAAGCCCGATGCT ACTATTACTTTGGGCCTCCTCCGCCCCAGAAGCCCAATGCT < 41bp 1 0.172759694939601 1 0.617817163467407 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44148521 chr7:44148536 nonsynonymous SNV 0.010 2 36 hm5C_associated_SNPs_22737 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.764365673065186 0.999536712157815 hm5C_site_23631 DeepMRMD:0.764365673065186;iRNA_m5C:0.999536712157815 23632 chr6 27806760 27806760 1 + G A GBM 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTAGCCAAG < 41bp 1 0.604153012095187 1 0.207083731889725 experiment 0.791693975809627 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806760 synonymous SNV . 0 35 hm5C_associated_SNPs_22738 0 0 1 0 2 Ribosome 1 0.500231643921286 1 0.999536712157428 hm5C_site_23632 DeepMRMD:1;iRNA_m5C:0.999536712157428 23633 chr2 220349266 220349266 1 + G A GBM 220349282 + 220349262 220349302 41 GCGCGGCCCCTTCCGTGGGGCCGAGGAGGAGGATGGCATAT GCGCAGCCCCTTCCGTGGGGCCGAGGAGGAGGATGGCATAT < 41bp 1 0.211403608566305 1 0.429611533880234 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220349282 chr2:220349266 nonsynonymous SNV 0.979 0 5 hm5C_associated_SNPs_22739 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23633 DeepMRMD:1;iRNA_m5C:0.999536712157815 23634 chr2 220349266 220349266 1 + G A GBM 220349283 + 220349263 220349303 41 CGCGGCCCCTTCCGTGGGGCCGAGGAGGAGGATGGCATATA CGCAGCCCCTTCCGTGGGGCCGAGGAGGAGGATGGCATATA < 41bp 1 0.33634781427503 1 0.718586683273315 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220349283 chr2:220349266 nonsynonymous SNV 0.979 0 4 hm5C_associated_SNPs_22740 0 0 0 0 0 Nucleus 1 0.500231643921095 0.56282663345337 0.99953671215781 hm5C_site_23634 DeepMRMD:0.56282663345337;iRNA_m5C:0.99953671215781 23635 chrX 54838631 54838631 1 + C A GBM 54838641 + 54838621 54838661 41 AGAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC AGAATGACCAATTGTACATTCTTCTCAGCACCTTAGAGCCC < 41bp 1 0.129012718763052 1 0.080108255147934 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838641 chrX:54838631 nonsynonymous SNV 0.975 3 11 hm5C_associated_SNPs_22741 0 0 1 0 2 chromatin 1 0.500232345809595 1 0.99953530838081 hm5C_site_23635 DeepMRMD:1;iRNA_m5C:0.99953530838081 23636 chrX 73040656 73040656 1 + T A GBM 73040659 - 73040639 73040679 41 AAGACTCTTGAACTTGTGAACTGATGTGAAATGCAGAATCT AAGACTCTTGAACTTGTGAACTGTTGTGAAATGCAGAATCT < 41bp 1 0.0932628791936859 1 0.0979996919631958 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040659 chrX:73040656 . . 0 24 hm5C_associated_SNPs_22742 0 0 1 0 0 unknown 1 0.500231995901223 1 0.999536008197554 hm5C_site_23636 DeepMRMD:1;iRNA_m5C:0.999536008197554 23637 chrX 73040656 73040656 1 + T A GBM 73040667 - 73040647 73040687 41 ATAAATGGAAGACTCTTGAACTTGTGAACTGATGTGAAATG ATAAATGGAAGACTCTTGAACTTGTGAACTGTTGTGAAATG < 41bp 1 0.099350373904115 1 0.0913731455802917 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040667 chrX:73040656 . . 0 32 hm5C_associated_SNPs_22743 0 0 1 0 0 unknown 1 0.500231665983705 1 0.999536668032591 hm5C_site_23637 DeepMRMD:1;iRNA_m5C:0.999536668032591 23638 chrX 73040656 73040656 1 + T A GBM 73040673 - 73040653 73040693 41 GCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGATGT GCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGTTGT < 41bp 1 0.303582220180761 1 0.532614171504974 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040673 chrX:73040656 . . 0 38 hm5C_associated_SNPs_22744 0 0 1 0 0 unknown 1 0.500231643921123 0.934771656990052 0.999536712157754 hm5C_site_23638 DeepMRMD:0.934771656990052;iRNA_m5C:0.999536712157754 23639 chrX 73040656 73040656 1 + T A GBM 73040675 - 73040655 73040695 41 AAGCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGAT AAGCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGTT < 41bp 1 0.0627413376741986 1 0.053968071937561 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040675 chrX:73040656 . . 0 40 hm5C_associated_SNPs_22745 0 0 1 0 0 unknown 1 0.500231643921088 1 0.999536712157824 hm5C_site_23639 DeepMRMD:1;iRNA_m5C:0.999536712157824 23640 chr2 10264898 10264898 1 + T C GBM 10264882 + 10264862 10264902 41 GAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCA GAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCCTCCA < 41bp 1 0.251428070286731 1 0.0773168504238129 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RRM2 ENSG00000171848 CDS Human protein_coding chr2:10264882 chr2:10264898 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_22746 0 0 0 0 2 Ribosome 1 0.500227631387756 1 0.999544737224487 hm5C_site_23640 DeepMRMD:1;iRNA_m5C:0.999544737224487 23641 chr7 150068992 150068992 1 + C T GBM 150068972 + 150068952 150068992 41 GCAGCCAAGGCTCTGGGGCCCCGGCCCAGGGGCCGCCCCGC GCAGCCAAGGCTCTGGGGCCCCGGCCCAGGGGCCGCCCCGT < 41bp 1 0.642076071618576 1 0.487643003463745 experiment 0.715847856762847 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150068972 chr7:150068992 nonsynonymous SNV 0.451 0 41 hm5C_associated_SNPs_22747 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23641 DeepMRMD:1;iRNA_m5C:0.999536712157815 23642 chr7 150068992 150068992 1 + C T GBM 150068984 + 150068964 150069004 41 CTGGGGCCCCGGCCCAGGGGCCGCCCCGCGGTGACCGCCCC CTGGGGCCCCGGCCCAGGGGCCGCCCCGTGGTGACCGCCCC < 41bp 1 0.314884529592546 1 0.360635191202164 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150068984 chr7:150068992 nonsynonymous SNV 0.451 0 29 hm5C_associated_SNPs_22749 0 0 1 0 0 Endoplasmic reticulum 1 0.500263119958908 1 0.999473760082185 hm5C_site_23642 DeepMRMD:1;iRNA_m5C:0.999473760082185 23643 chr1 145325981 145325981 1 + G A GBM 145325991 + 145325971 145326011 41 GATGAGAAAGGGCCTGAAGTCTTGCAAGACTCACTGGATAG GATGAGAAAGAGCCTGAAGTCTTGCAAGACTCACTGGATAG < 41bp 1 0.161460117871666 1 0.107846617698669 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NBPF10 ENSG00000163386 CDS Human other chr1:145325991 chr1:145325981 nonsynonymous SNV . 0 11 hm5C_associated_SNPs_22751 0 0 0 0 1 chromatin 1 0.50023164490909 1 0.999536710181821 hm5C_site_23643 DeepMRMD:1;iRNA_m5C:0.999536710181821 23644 chr19 10823297 10823297 1 + G A GBM 10823292 + 10823272 10823312 41 ATGTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT ATGTTCGACTGCGTCTTCCCCACACAGACAGCGGTGAGGCT < 41bp 1 0.189350627193704 1 0.0931949019432068 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823292 chr19:10823297 nonsynonymous SNV 0.929 3 26 hm5C_associated_SNPs_22752 0 0 1 0 2 Ribosome 1 0.5002316493122 1 0.9995367013756 hm5C_site_23644 DeepMRMD:1;iRNA_m5C:0.9995367013756 23645 chr10 115489209 115489209 1 + G C GBM 115489196 + 115489176 115489216 41 CAGGGTGAATGACAGAGTTGCCAGGCACTTTGAGTCTCAGT CAGGGTGAATGACAGAGTTGCCAGGCACTTTGACTCTCAGT < 41bp 1 0.327874875052391 1 0.263132154941559 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489196 chr10:115489209 nonsynonymous SNV 0.991 4 34 hm5C_associated_SNPs_22753 0 0 1 2 0 Ribosome 1 0.500231643920779 1 0.999536712158442 hm5C_site_23645 DeepMRMD:1;iRNA_m5C:0.999536712158442 23646 chr1 7796551 7796551 1 + G A GBM 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCCGCGGAATGACCCTACTCCACCTGACCGCTGCCCAGGG < 41bp 1 0.265125135925401 1 0.406592071056366 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796551 nonsynonymous SNV 0.997 4 28 hm5C_associated_SNPs_22754 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23646 DeepMRMD:1;iRNA_m5C:0.999536712157815 23647 chr12 101711355 101711355 1 + C T GBM 101711340 + 101711320 101711360 41 GGGATGGTGGCAGAGGAAATCGAAGAGGAACCTGCCGCAGG GGGATGGTGGCAGAGGAAATCGAAGAGGAACCTGCTGCAGG < 41bp 1 0.651425400045708 1 0.85453075170517 experiment 0.697149199908584 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711340 chr12:101711355 synonymous SNV . 0 36 hm5C_associated_SNPs_22755 0 0 1 0 2 Cytosol 1 0.500231643654408 0.29093849658966 0.999536712691183 hm5C_site_23647 DeepMRMD:0.29093849658966;iRNA_m5C:0.999536712691183 23648 chr12 101711355 101711355 1 + C T GBM 101711351 + 101711331 101711371 41 AGAGGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAG AGAGGAAATCGAAGAGGAACCTGCTGCAGGAGATGATGAAG < 41bp 1 0.446739014053192 1 0.665351390838623 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711351 chr12:101711355 synonymous SNV . 0 25 hm5C_associated_SNPs_22756 0 0 1 0 2 Cytosol 1 0.500231644064449 0.669297218322754 0.999536711871103 hm5C_site_23648 DeepMRMD:0.669297218322754;iRNA_m5C:0.999536711871103 23649 chr12 101711355 101711355 1 + C T GBM 101711354 + 101711334 101711374 41 GGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGT GGAAATCGAAGAGGAACCTGCTGCAGGAGATGATGAAGAGT < 41bp 1 0.537051447031218 1 0.667464792728424 experiment 0.925897105937564 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711354 chr12:101711355 synonymous SNV . 0 22 hm5C_associated_SNPs_22757 0 0 1 0 2 Cytosol 1 0.500231643921092 0.665070414543152 0.999536712157815 hm5C_site_23649 DeepMRMD:0.665070414543152;iRNA_m5C:0.999536712157815 23650 chr3 126741046 126741046 1 + G A GBM 126741032 + 126741012 126741052 41 CTGGAGGCACAGCGCAGCTTCTCCATGCGCGACCGCGGGAA CTGGAGGCACAGCGCAGCTTCTCCATGCGCGACCACGGGAA < 41bp 1 0.642755477475913 1 0.966074228286743 experiment 0.714489045048175 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126741032 chr3:126741046 nonsynonymous SNV 0.910 4 35 hm5C_associated_SNPs_22759 0 0 1 0 0 Ribosome 1 0.500231525224525 0.0678515434265139 0.99953694955095 hm5C_site_23650 DeepMRMD:0.0678515434265139;iRNA_m5C:0.99953694955095 23651 chr16 67572596 67572596 1 + G A GBM 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCG < 41bp 1 0.0577753004957944 1 0.15443217754364 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572596 synonymous SNV . 0 14 hm5C_associated_SNPs_22760 0 0 0 0 2 unknown 1 0.500231597720719 1 0.999536804558561 hm5C_site_23651 DeepMRMD:1;iRNA_m5C:0.999536804558561 23652 chr16 67572596 67572596 1 + G A GBM 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCGC < 41bp 1 0.451847623289268 1 0.367152452468872 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572596 synonymous SNV . 0 13 hm5C_associated_SNPs_22761 0 0 0 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23652 DeepMRMD:1;iRNA_m5C:0.999536712157815 23653 chr16 67572596 67572596 1 + G A GBM 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCGCT < 41bp 1 0.120542321372419 1 0.345785349607468 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572596 synonymous SNV . 0 12 hm5C_associated_SNPs_22762 0 0 0 0 2 unknown 1 0.500231643921606 1 0.999536712156787 hm5C_site_23653 DeepMRMD:1;iRNA_m5C:0.999536712156787 23654 chr16 67572596 67572596 1 + G A GBM 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCCACCGGGGCCCCCACGGAAGCCCCCCGCGCTC < 41bp 1 0.453133779365057 1 0.287953317165375 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572596 synonymous SNV . 0 11 hm5C_associated_SNPs_22763 0 0 0 0 2 unknown 1 0.500231643921097 1 0.999536712157805 hm5C_site_23654 DeepMRMD:1;iRNA_m5C:0.999536712157805 23655 chr9 129458214 129458214 1 + G A GBM 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGACAGCAGCGACCCCTTCCAGCAGGG < 41bp 1 0.601347024591791 1 0.600004971027374 experiment 0.797305950816418 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458214 nonsynonymous SNV 0.917 2 17 hm5C_associated_SNPs_22765 0 0 0 0 3 Endoplasmic reticulum 1 0.500231643921092 0.799990057945252 0.999536712157815 hm5C_site_23655 DeepMRMD:0.799990057945252;iRNA_m5C:0.999536712157815 23656 chr10 5791130 5791130 1 + C A GBM 5791136 + 5791116 5791156 41 CTTACGTCCAAATCCGAGATCTCCACGGGATCCTCAGGACT CTTACGTCCAAATCAGAGATCTCCACGGGATCCTCAGGACT < 41bp 1 0.562728038908868 1 0.645617485046387 experiment 0.874543922182264 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM208B ENSG00000108021 CDS Human protein_coding chr10:5791136 chr10:5791130 synonymous SNV . 0 15 hm5C_associated_SNPs_22766 0 0 1 0 0 Nucleus 1 0.500231640137857 0.708765029907226 0.999536719724286 hm5C_site_23656 DeepMRMD:0.708765029907226;iRNA_m5C:0.999536719724286 23657 chr1 31897702 31897702 1 + G A GBM 31897691 + 31897671 31897711 41 ATGCTCTGCGTGAGCAGCAGCCGGGACCCCCGGGCTGCCAT ATGCTCTGCGTGAGCAGCAGCCGGGACCCCCAGGCTGCCAT < 41bp 1 0.679931166136295 1 0.872019052505493 experiment 0.640137667727409 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31897691 chr1:31897702 nonsynonymous SNV 0.831 4 32 hm5C_associated_SNPs_22767 0 0 1 0 1 Endoplasmic reticulum 1 0.500231316560329 0.255961894989014 0.999537366879341 hm5C_site_23657 DeepMRMD:0.255961894989014;iRNA_m5C:0.999537366879341 23658 chr11 61631211 61631211 1 + C T GBM 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CAGCCACCTGCAACGTGGAGCAGTCCTTTTTCAACGACTGG < 41bp 1 0.0277733927319981 1 0.336548149585724 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631211 synonymous SNV . 0 29 hm5C_associated_SNPs_22768 0 0 1 0 2 Ribosome 1 0.500231643921247 1 0.999536712157507 hm5C_site_23658 DeepMRMD:1;iRNA_m5C:0.999536712157507 23659 chr2 128867271 128867271 1 + A G GBM 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGGCTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA < 41bp 1 0.0435439589332206 1 0.0645526349544525 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867271 nonsynonymous SNV 0.993 0 5 hm5C_associated_SNPs_22769 0 0 1 0 2 Nucleus 1 0.500231643921087 1 0.999536712157826 hm5C_site_23659 DeepMRMD:1;iRNA_m5C:0.999536712157826 23660 chr12 95877031 95877031 1 + G A GBM 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAAAAAA < 41bp 1 0.333463057462786 1 0.360905647277832 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877031 synonymous SNV . 0 37 hm5C_associated_SNPs_22770 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23660 DeepMRMD:1;iRNA_m5C:0.999536712157815 23661 chr19 13051173 13051173 1 + G T GBM 13051158 + 13051138 13051178 41 GAGTCCGGCTCCTTGGAAGACGATTGGGACTTCCTGCCACC GAGTCCGGCTCCTTGGAAGACGATTGGGACTTCCTTCCACC < 41bp 1 0.322305552724869 1 0.309778839349747 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051158 chr19:13051173 synonymous SNV . 0 36 hm5C_associated_SNPs_22771 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23661 DeepMRMD:1;iRNA_m5C:0.999536712157815 23662 chr19 13051173 13051173 1 + G T GBM 13051171 + 13051151 13051191 41 TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAG TGGAAGACGATTGGGACTTCCTTCCACCCAAGAAGATAAAG < 41bp 1 0.122909121322613 1 0.125648349523544 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051171 chr19:13051173 synonymous SNV . 0 23 hm5C_associated_SNPs_22772 0 0 1 0 1 Ribosome 1 0.50023164392108 1 0.999536712157841 hm5C_site_23662 DeepMRMD:1;iRNA_m5C:0.999536712157841 23663 chr19 13051173 13051173 1 + G T GBM 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTCCTTCCACCCAAGAAGATAAAGGATC < 41bp 1 0.398708703373437 1 0.293612778186798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051173 synonymous SNV . 0 19 hm5C_associated_SNPs_22773 0 0 1 0 1 Ribosome 1 0.500231618642593 1 0.999536762714814 hm5C_site_23663 DeepMRMD:1;iRNA_m5C:0.999536762714814 23664 chr2 11300636 11300636 1 + C T GBM 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT TGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT < 41bp 1 0.197515968967083 1 0.19433605670929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300636 nonsynonymous SNV 0.753 1 1 hm5C_associated_SNPs_22774 0 0 1 0 2 Ribosome 1 0.500231695583264 1 0.999536608833473 hm5C_site_23664 DeepMRMD:1;iRNA_m5C:0.999536608833473 23665 chr3 184021749 184021749 1 + T C GBM 184021744 + 184021724 184021764 41 GCTCTTTGTAGTCAGGAGCTCTTCTTGCCTGTGGCATAGTG GCTCTTTGTAGTCAGGAGCTCTTCTCGCCTGTGGCATAGTG < 41bp 1 0.114774331272754 1 0.139977902173996 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021744 chr3:184021749 synonymous SNV . 0 26 hm5C_associated_SNPs_22775 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_23665 DeepMRMD:1;iRNA_m5C:0.999536712157816 23666 chr12 14650695 14650695 1 + G A GBM 14650689 + 14650669 14650709 41 TCTCTGCCTCAGAAGCCACACTTGAAGTTAGCACGCGTTCA TCTCTGCCTCAGAAGCCACACTTGAAATTAGCACGCGTTCA < 41bp 1 0.686021244508292 1 0.210251003503799 experiment 0.627957510983417 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14650689 chr12:14650695 synonymous SNV . 0 27 hm5C_associated_SNPs_22776 0 0 1 0 0 Cytosol 1 0.500231575640161 1 0.999536848719678 hm5C_site_23666 DeepMRMD:1;iRNA_m5C:0.999536848719678 23667 chr6 36564707 36564707 1 + C T GBM 36564724 + 36564704 36564744 41 TCCCCGAGATGCAGCTGATGCAGTCCGAGAGCTAGATGGAA TCCTCGAGATGCAGCTGATGCAGTCCGAGAGCTAGATGGAA < 41bp 1 0.259686846328752 1 0.204795509576797 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36564724 chr6:36564707 synonymous SNV . 0 4 hm5C_associated_SNPs_22777 0 0 1 0 1 Ribosome 1 0.500231645448623 1 0.999536709102754 hm5C_site_23667 DeepMRMD:1;iRNA_m5C:0.999536709102754 23668 chr3 184042686 184042686 1 + G T GBM 184042675 + 184042655 184042695 41 GTGAATGGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAG GTGAATGGCAGGCAGAGGAACGAGGACGCCTTAAGGAAGAG < 41bp 1 0.612277056560979 1 0.557397305965424 experiment 0.775445886878042 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042675 chr3:184042686 synonymous SNV . 0 32 hm5C_associated_SNPs_22778 0 0 1 0 1 Nucleus 1 0.50023164389374 0.885205388069152 0.99953671221252 hm5C_site_23668 DeepMRMD:0.885205388069152;iRNA_m5C:0.99953671221252 23669 chr3 184042686 184042686 1 + G T GBM 184042681 + 184042661 184042701 41 GGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAA GGCAGGCAGAGGAACGAGGACGCCTTAAGGAAGAGCTGGAA < 41bp 1 0.46067850701713 1 0.426222860813141 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042681 chr3:184042686 synonymous SNV . 0 26 hm5C_associated_SNPs_22779 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23669 DeepMRMD:1;iRNA_m5C:0.999536712157815 23670 chr3 184042686 184042686 1 + G T GBM 184042684 + 184042664 184042704 41 AGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAAGAG AGGCAGAGGAACGAGGACGCCTTAAGGAAGAGCTGGAAGAG < 41bp 1 0.515401382863695 1 0.466239184141159 experiment 0.969197234272611 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042684 chr3:184042686 synonymous SNV . 0 23 hm5C_associated_SNPs_22780 0 0 1 0 1 Nucleus 1 0.500231645987343 1 0.999536708025314 hm5C_site_23670 DeepMRMD:1;iRNA_m5C:0.999536708025314 23671 chr1 248039235 248039235 1 + C T GBM 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCTGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA < 41bp 1 0.691976986683217 1 0.406234562397003 experiment 0.616046026633566 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039235 nonsynonymous SNV 0.005 4 5 hm5C_associated_SNPs_22781 0 0 0 0 1 Cytosol 1 0.500243597986471 1 0.999512804027057 hm5C_site_23671 DeepMRMD:1;iRNA_m5C:0.999512804027057 23672 chr17 57738898 57738898 1 + T C GBM 57738906 + 57738886 57738926 41 ACTTTGGTATCCTTTTGGACCAGGGACAGCTCAACAAATAC ACTTTGGTATCCCTTTGGACCAGGGACAGCTCAACAAATAC < 41bp 1 0.629166476426427 1 0.74748158454895 experiment 0.741667047147146 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57738906 chr17:57738898 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_22782 0 0 1 0 1 Nucleus 1 0.500231642882199 0.5050368309021 0.999536714235602 hm5C_site_23672 DeepMRMD:0.5050368309021;iRNA_m5C:0.999536714235602 23673 chrX 47098522 47098522 1 + G A GBM 47098540 + 47098520 47098560 41 AGGGGACCAGGACTCCAGCACCTTCCCTGGCTGCATCAACA AGAGGACCAGGACTCCAGCACCTTCCCTGGCTGCATCAACA < 41bp 1 0.00704018875086204 1 0.0632175803184509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47098540 chrX:47098522 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_22783 0 0 0 0 1 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_23673 DeepMRMD:1;iRNA_m5C:0.999536712157815 23674 chr1 7845640 7845640 1 + G A GBM 7845627 + 7845607 7845647 41 GCCCTCAACTATGCTCTCCGCTGTGTCCACAGCGTTCAAGG GCCCTCAACTATGCTCTCCGCTGTGTCCACAGCATTCAAGG < 41bp 1 0.336400911578411 1 0.119688600301743 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PER3 ENSG00000049246 CDS Human protein_coding chr1:7845627 chr1:7845640 nonsynonymous SNV 0.997 3 34 hm5C_associated_SNPs_22784 0 0 0 0 1 chromatin 1 0.5002093905137 1 0.9995812189726 hm5C_site_23674 DeepMRMD:1;iRNA_m5C:0.9995812189726 23675 chr14 76638263 76638263 1 + T C GBM 76638267 + 76638247 76638287 41 TAATCTTCTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAG TAATCTTCTGCCCAAGCGGGCTCCTGATCATTGTTCTGAAG < 41bp 1 0.229022283244076 1 0.106115698814392 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76638267 chr14:76638263 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_22785 0 0 1 0 2 Nucleus 1 0.500231643822739 1 0.999536712354522 hm5C_site_23675 DeepMRMD:1;iRNA_m5C:0.999536712354522 23676 chr5 176687001 176687001 1 + C T GBM 176686992 + 176686972 176687012 41 CTGATTTTCCTGCTTTAGGTCGGTTGATGCGCTGTGTCCGC CTGATTTTCCTGCTTTAGGTCGGTTGATGTGCTGTGTCCGC < 41bp 1 0.0933015890093635 1 0.400841385126114 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176686992 chr5:176687001 nonsynonymous SNV 0.996 5 30 hm5C_associated_SNPs_22786 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23676 DeepMRMD:1;iRNA_m5C:0.999536712157815 23677 chr7 130020970 130020970 1 + G A GBM 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGAATCTCTGTAGCCGATAAGGCCCAGGTACAGA < 41bp 1 0.234054301720417 1 0.0936456024646759 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020970 nonsynonymous SNV 0.172 2 26 hm5C_associated_SNPs_22787 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921089 1 0.999536712157822 hm5C_site_23677 DeepMRMD:1;iRNA_m5C:0.999536712157822 23678 chr19 58772931 58772931 1 + G C GBM 58772944 + 58772924 58772964 41 AGAAGTGGCCCTGGAGAGACCCCCTTCAGATGTGAGGAACG AGAAGTGCCCCTGGAGAGACCCCCTTCAGATGTGAGGAACG < 41bp 1 0.196389095505007 1 0.164288461208344 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58772944 chr19:58772931 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_22788 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_23678 DeepMRMD:1;iRNA_m5C:0.999536712157815 23679 chr22 38074643 38074643 1 + G A GBM 38074635 + 38074615 38074655 41 AGCAGCGGGAGGCTGTCTTTCCCTTCCAGCCTGGAAGTGTT AGCAGCGGGAGGCTGTCTTTCCCTTCCAACCTGGAAGTGTT < 41bp 1 0.193626946144624 1 0.271161019802094 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LGALS1 ENSG00000100097 CDS Human protein_coding chr22:38074635 chr22:38074643 synonymous SNV . 0 29 hm5C_associated_SNPs_22789 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23679 DeepMRMD:1;iRNA_m5C:0.999536712157815 23680 chr22 38074643 38074643 1 + G A GBM 38074636 + 38074616 38074656 41 GCAGCGGGAGGCTGTCTTTCCCTTCCAGCCTGGAAGTGTTG GCAGCGGGAGGCTGTCTTTCCCTTCCAACCTGGAAGTGTTG < 41bp 1 0.04896998677076 1 0.360706478357315 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LGALS1 ENSG00000100097 CDS Human protein_coding chr22:38074636 chr22:38074643 synonymous SNV . 0 28 hm5C_associated_SNPs_22790 0 0 1 0 1 Ribosome 1 0.500231643917856 1 0.999536712164288 hm5C_site_23680 DeepMRMD:1;iRNA_m5C:0.999536712164288 23681 chr22 38074643 38074643 1 + G A GBM 38074637 + 38074617 38074657 41 CAGCGGGAGGCTGTCTTTCCCTTCCAGCCTGGAAGTGTTGC CAGCGGGAGGCTGTCTTTCCCTTCCAACCTGGAAGTGTTGC < 41bp 1 0.23185215319469 1 0.383107244968414 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LGALS1 ENSG00000100097 CDS Human protein_coding chr22:38074637 chr22:38074643 synonymous SNV . 0 27 hm5C_associated_SNPs_22791 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23681 DeepMRMD:1;iRNA_m5C:0.999536712157815 23682 chr2 11053279 11053279 1 + T C GBM 11053264 + 11053244 11053284 41 GCTGGTTCACCCTGGAGTACCTGCTGCGCCTCTTCTCGTCA GCTGGTTCACCCTGGAGTACCTGCTGCGCCTCTTCCCGTCA < 41bp 1 0.622907274104783 1 0.0955094397068024 experiment 0.754185451790434 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11053264 chr2:11053279 nonsynonymous SNV 0.936 5 36 hm5C_associated_SNPs_22792 0 0 0 0 0 exosome 1 0.500228601186173 1 0.999542797627655 hm5C_site_23682 DeepMRMD:1;iRNA_m5C:0.999542797627655 23683 chr9 123898173 123898173 1 + A G GBM 123898159 + 123898139 123898179 41 TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAAGCTGAG TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAGGCTGAG < 41bp 1 0.67211634832243 1 0.422617703676224 experiment 0.655767303355139 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898159 chr9:123898173 synonymous SNV . 0 35 hm5C_associated_SNPs_22793 0 0 1 0 2 chromatin 1 0.500231643940456 1 0.999536712119089 hm5C_site_23683 DeepMRMD:1;iRNA_m5C:0.999536712119089 23684 chr2 54856364 54856364 1 + T G GBM 54856361 + 54856341 54856381 41 CAGTGGCCACTTTGAGCAGGCCATCAAGGAAGGCGAAGACA CAGTGGCCACTTTGAGCAGGCCAGCAAGGAAGGCGAAGACA < 41bp 1 0.0722003291608967 1 0.0909414291381836 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54856361 chr2:54856364 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_22794 0 0 1 0 0 Nucleus 1 0.500231643921083 1 0.999536712157834 hm5C_site_23684 DeepMRMD:1;iRNA_m5C:0.999536712157834 23685 chr2 54856364 54856364 1 + T G GBM 54856362 + 54856342 54856382 41 AGTGGCCACTTTGAGCAGGCCATCAAGGAAGGCGAAGACAT AGTGGCCACTTTGAGCAGGCCAGCAAGGAAGGCGAAGACAT < 41bp 1 0.611058575818317 1 0.193570822477341 experiment 0.777882848363366 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54856362 chr2:54856364 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_22795 0 0 1 0 0 Nucleus 1 0.500232033090229 1 0.999535933819542 hm5C_site_23685 DeepMRMD:1;iRNA_m5C:0.999535933819542 23686 chr2 54856364 54856364 1 + T G GBM 54856365 + 54856345 54856385 41 GGCCACTTTGAGCAGGCCATCAAGGAAGGCGAAGACATGAT GGCCACTTTGAGCAGGCCAGCAAGGAAGGCGAAGACATGAT < 41bp 1 0.491526868227003 1 0.61268675327301 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54856365 chr2:54856364 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_22796 0 0 1 0 0 Nucleus 1 0.500231643921092 0.77462649345398 0.999536712157816 hm5C_site_23686 DeepMRMD:0.77462649345398;iRNA_m5C:0.999536712157816 23687 chr3 101520152 101520152 1 + G A GBM 101520149 + 101520129 101520169 41 GTTTGTTTCCTCCCAGGTGACAGGAATTAGCCGAAATCCCT GTTTGTTTCCTCCCAGGTGACAGAAATTAGCCGAAATCCCT < 41bp 1 0.695670853874024 1 0.659478306770325 experiment 0.608658292251952 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NXPE3 ENSG00000144815 CDS Human protein_coding chr3:101520149 chr3:101520152 nonsynonymous SNV 0.418 0 24 hm5C_associated_SNPs_22797 0 0 1 0 1 Ribosome 1 0.500231643921092 0.68104338645935 0.999536712157815 hm5C_site_23687 DeepMRMD:0.68104338645935;iRNA_m5C:0.999536712157815 23688 chr16 31487442 31487442 1 + G A GBM 31487435 + 31487415 31487455 41 TCTTCGAGAAGGATGGAGCCCCCTTCTGCCCCGAGTGCTAC TCTTCGAGAAGGATGGAGCCCCCTTCTACCCCGAGTGCTAC < 41bp 1 0.0996139746422927 1 0.0513380169868469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31487435 chr16:31487442 nonsynonymous SNV 0.979 5 28 hm5C_associated_SNPs_22798 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23688 DeepMRMD:1;iRNA_m5C:0.999536712157815 23689 chr5 149755836 149755836 1 + C T GBM 149755829 + 149755809 149755849 41 CCAGAGACCAGCAGAGGATTCTTCAAGCAGTGAGGAATCAG CCAGAGACCAGCAGAGGATTCTTCAAGTAGTGAGGAATCAG < 41bp 1 0.340960153440196 1 0.245932757854462 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755829 chr5:149755836 synonymous SNV . 0 28 hm5C_associated_SNPs_22799 0 0 1 0 1 Nucleus 1 0.500231643924605 1 0.999536712150789 hm5C_site_23689 DeepMRMD:1;iRNA_m5C:0.999536712150789 23690 chr5 149755836 149755836 1 + C T GBM 149755847 + 149755827 149755867 41 TTCTTCAAGCAGTGAGGAATCAGATAGTGAGGAAGAGAAGA TTCTTCAAGTAGTGAGGAATCAGATAGTGAGGAAGAGAAGA < 41bp 1 0.345270904979112 1 0.473303407430649 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149755847 chr5:149755836 synonymous SNV . 0 10 hm5C_associated_SNPs_22800 0 0 1 0 1 Nucleus 1 0.500231217376162 1 0.999537565247676 hm5C_site_23690 DeepMRMD:1;iRNA_m5C:0.999537565247676 23691 chr17 41585024 41585024 1 + C A GBM 41585007 + 41584987 41585027 41 GATCATCATGTTGGACGAGGCACATGAGAGGACAATTCACA GATCATCATGTTGGACGAGGCACATGAGAGGACAATTAACA < 41bp 1 0.279566889452708 1 0.197767227888107 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41585007 chr17:41585024 nonsynonymous SNV 0.996 1 38 hm5C_associated_SNPs_22801 0 0 1 0 1 Cytosol 1 0.500231643921276 1 0.999536712157448 hm5C_site_23691 DeepMRMD:1;iRNA_m5C:0.999536712157448 23692 chr19 18232701 18232701 1 + G C GBM 18232699 + 18232679 18232719 41 TAGTCCTCGGAATTTCTCGGCTGCCTCTGCCCTAAATTTCC TAGTCCTCGGAATTTCTCGGCTCCCTCTGCCCTAAATTTCC < 41bp 1 0.057857357547356 1 0.138559341430664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST3 ENSG00000099308 CDS Human protein_coding chr19:18232699 chr19:18232701 nonsynonymous SNV 0.184 0 23 hm5C_associated_SNPs_22802 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23692 DeepMRMD:1;iRNA_m5C:0.999536712157815 23693 chr11 118950008 118950008 1 + C A GBM 118949993 + 118949973 118950013 41 ACCCGTATCCGCCAGGAGATCCAAGAGCTCAAGGCCAGGTA ACCCGTATCCGCCAGGAGATCCAAGAGCTCAAGGCAAGGTA < 41bp 1 0.420285664660665 1 0.323863983154297 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS11 ENSG00000160695 CDS Human protein_coding chr11:118949993 chr11:118950008 synonymous SNV . 0 36 hm5C_associated_SNPs_22803 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23693 DeepMRMD:1;iRNA_m5C:0.999536712157815 23694 chr19 34292103 34292103 1 + C T GBM 34292109 + 34292089 34292129 41 CCGGCTGTCTCTCACCCGGTCGCCTGTGTCTCCCCTGGCTG CCGGCTGTCTCTCATCCGGTCGCCTGTGTCTCCCCTGGCTG < 41bp 1 0.590769574764334 1 0.0612784922122955 experiment 0.818460850471331 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34292109 chr19:34292103 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_22804 0 0 1 0 1 Cytosol 1 0.500231643921043 1 0.999536712157915 hm5C_site_23694 DeepMRMD:1;iRNA_m5C:0.999536712157915 23695 chr10 101715528 101715528 1 + G C GBM 101715533 - 101715513 101715553 41 GAGAAGAGCTTGGCAGGGCCCGGCACAGAGCCAGATAAAAT GAGAAGAGCTTGGCAGGGCCCGGCAGAGAGCCAGATAAAAT < 41bp 1 0.682105445739158 1 0.732744812965393 experiment 0.635789108521683 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNMBP ENSG00000107554 CDS Human protein_coding chr10:101715533 chr10:101715528 nonsynonymous SNV 0.087 1 26 hm5C_associated_SNPs_22805 0 0 0 0 0 Nucleus 1 0.500231643921071 0.534510374069214 0.999536712157859 hm5C_site_23695 DeepMRMD:0.534510374069214;iRNA_m5C:0.999536712157859 23696 chr16 30976386 30976386 1 + T C GBM 30976366 + 30976346 30976386 41 CTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTGGT CTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTGGC < 41bp 1 0.635714683451509 1 0.747687339782715 experiment 0.728570633096981 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976366 chr16:30976386 synonymous SNV . 0 41 hm5C_associated_SNPs_22806 0 0 1 0 0 Cytosol 1 0.500231643927933 0.50462532043457 0.999536712144134 hm5C_site_23696 DeepMRMD:0.50462532043457;iRNA_m5C:0.999536712144134 23697 chr16 30976386 30976386 1 + T C GBM 30976367 + 30976347 30976387 41 TGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTGGTG TGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTGGCG < 41bp 1 0.471893189890865 1 0.927175760269165 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976367 chr16:30976386 synonymous SNV . 0 40 hm5C_associated_SNPs_22807 0 0 1 0 0 Cytosol 1 0.500231643913076 0.14564847946167 0.999536712173848 hm5C_site_23697 DeepMRMD:0.14564847946167;iRNA_m5C:0.999536712173848 23698 chr19 50906832 50906832 1 + T C GBM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCACCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0779431883126172 1 0.150748312473297 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906832 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_22808 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23698 DeepMRMD:1;iRNA_m5C:0.999536712157815 23699 chr19 50906832 50906832 1 + T C GBM 50906851 + 50906831 50906871 41 ATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT ACCTCTCGGGCCCAGACCCTCAAGGTGAGGGCTGGGCAGGT < 41bp 1 0.685862276313499 1 0.889750182628632 experiment 0.628275447373001 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906851 chr19:50906832 nonsynonymous SNV 0.999 1 2 hm5C_associated_SNPs_22809 0 0 1 0 2 Nucleus 1 0.500231637295802 0.220499634742736 0.999536725408397 hm5C_site_23699 DeepMRMD:0.220499634742736;iRNA_m5C:0.999536725408397 23700 chr5 10387160 10387160 1 + C G GBM 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCCGTGAGCTCACTACTGACGCTGCGATTAGATATG < 41bp 1 0.249733280473604 1 0.116332441568375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387160 nonsynonymous SNV 0.998 4 31 hm5C_associated_SNPs_22810 0 0 1 0 2 Nucleus 1 0.500231644130089 1 0.999536711739822 hm5C_site_23700 DeepMRMD:1;iRNA_m5C:0.999536711739822 23701 chr14 104135871 104135871 1 + C A GBM 104135852 + 104135832 104135872 41 GTGTTTTTCCATTTAGGGATCAGAATAAATACAAAGATGCA GTGTTTTTCCATTTAGGGATCAGAATAAATACAAAGATGAA < 41bp 1 0.254027273343639 1 0.620356917381287 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104135852 chr14:104135871 nonsynonymous SNV 0.985 5 40 hm5C_associated_SNPs_22811 0 0 1 0 2 Cytosol 1 0.500231643921061 0.759286165237426 0.999536712157877 hm5C_site_23701 DeepMRMD:0.759286165237426;iRNA_m5C:0.999536712157877 23702 chr1 10425617 10425617 1 + G C GBM 10425628 + 10425608 10425648 41 ACTACCTTTGAAAGCGCCATCACACCTAGCGAGAGCAGTGG ACTACCTTTCAAAGCGCCATCACACCTAGCGAGAGCAGTGG < 41bp 1 0.0900305786367085 1 0.0934891998767853 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10425628 chr1:10425617 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_22812 0 0 0 0 1 Cytosol 1 0.500229312931816 1 0.999541374136367 hm5C_site_23702 DeepMRMD:1;iRNA_m5C:0.999541374136367 23703 chr19 50728931 50728931 1 + A G GBM 50728929 + 50728909 50728949 41 TGAAGAATGACAACTCCTCCCGATTCGTGAGTGCCAGGGGT TGAAGAATGACAACTCCTCCCGGTTCGTGAGTGCCAGGGGT < 41bp 1 0.141658568203333 1 0.402524471282959 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50728929 chr19:50728931 synonymous SNV . 0 23 hm5C_associated_SNPs_22813 0 0 0 0 1 cytosol 1 0.500231643908716 1 0.999536712182567 hm5C_site_23703 DeepMRMD:1;iRNA_m5C:0.999536712182567 23704 chr1 27269376 27269376 1 + C A GBM 27269371 + 27269351 27269391 41 GCCCTATGCAGCTGGCGGTCCCTTTCTGTGTGAACTTCCGG GCCCTATGCAGCTGGCGGTCCCTTTATGTGTGAACTTCCGG < 41bp 1 0.0159399601073785 1 0.0124955475330353 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUDC ENSG00000090273 CDS Human protein_coding chr1:27269371 chr1:27269376 nonsynonymous SNV 0.271 1 26 hm5C_associated_SNPs_22814 0 0 1 0 1 Ribosome 1 0.500231661281817 1 0.999536677436366 hm5C_site_23704 DeepMRMD:1;iRNA_m5C:0.999536677436366 23705 chr12 8196362 8196362 1 + T C GBM 8196351 + 8196331 8196371 41 TTTCCCGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT TTTCCCGAAAGAGAAGACACCCTCCAGATGACGATGTAAGT < 41bp 1 0.0166196331494138 1 0.0477424263954163 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196351 chr12:8196362 synonymous SNV . 0 32 hm5C_associated_SNPs_22815 0 0 0 0 1 nucleoplasm 1 0.500231643921562 1 0.999536712156876 hm5C_site_23705 DeepMRMD:1;iRNA_m5C:0.999536712156876 23706 chr14 94512184 94512184 1 + G T GBM 94512166 + 94512146 94512186 41 TACGTGGACGAGATGGATACCGCCCTGAACCACCACGTGTT TACGTGGACGAGATGGATACCGCCCTGAACCACCACGTTTT < 41bp 1 0.525503867753498 1 0.20220559835434 experiment 0.948992264493004 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUB2 ENSG00000089723 CDS Human protein_coding chr14:94512166 chr14:94512184 synonymous SNV . 0 39 hm5C_associated_SNPs_22816 0 0 0 0 0 exosome 1 0.500231660881081 1 0.999536678237839 hm5C_site_23706 DeepMRMD:1;iRNA_m5C:0.999536678237839 23707 chr12 53412635 53412635 1 + G T GBM 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATGACGATGTGTATAGGGCGCCTCCAATTTACCGTTCCA < 41bp 1 0.378001948952907 1 0.0358216762542725 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412635 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_22817 0 0 1 0 1 Cytosol 1 0.500231516289593 1 0.999536967420813 hm5C_site_23707 DeepMRMD:1;iRNA_m5C:0.999536967420813 23708 chr12 53412635 53412635 1 + G T GBM 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGACGATGTGTATAGGGCGCCTCCAATTTACCGTTCCATC < 41bp 1 0.0453645548221381 1 0.03049236536026 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412635 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_22818 0 0 1 0 1 Cytosol 1 0.500202161178394 1 0.999595677643212 hm5C_site_23708 DeepMRMD:1;iRNA_m5C:0.999595677643212 23709 chr15 39876521 39876521 1 + G T GBM 39876541 + 39876521 39876561 41 GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG TGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG < 41bp 1 0.153948090061367 1 0.261841237545013 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876541 chr15:39876521 nonsynonymous SNV 0.996 1 1 hm5C_associated_SNPs_22819 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23709 DeepMRMD:1;iRNA_m5C:0.999536712157815 23710 chrX 129149570 129149570 1 + G T GBM 129149555 + 129149535 129149575 41 GACTGGGACCCTGGCACTGTCTGTTCAGCCTAGCGGTGGGG GACTGGGACCCTGGCACTGTCTGTTCAGCCTAGCGTTGGGG < 41bp 1 0.153697157630384 1 0.0937884747982025 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129149555 chrX:129149570 nonsynonymous SNV 0.518 1 36 hm5C_associated_SNPs_22820 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23710 DeepMRMD:1;iRNA_m5C:0.999536712157815 23711 chr2 113325658 113325658 1 + C T GBM 113325644 + 113325624 113325664 41 ATTGTTCCTTTTTACCACTCCTTGTAGACTGGTACGGCCTG ATTGTTCCTTTTTACCACTCCTTGTAGACTGGTATGGCCTG < 41bp 1 0.196377435822389 1 0.258165597915649 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113325644 chr2:113325658 nonsynonymous SNV 0.977 4 35 hm5C_associated_SNPs_22821 0 0 1 0 1 Nucleus 1 0.500231643921557 1 0.999536712156886 hm5C_site_23711 DeepMRMD:1;iRNA_m5C:0.999536712156886 23712 chr2 203421049 203421049 1 + T C GBM 203421065 + 203421045 203421085 41 GTCTTGTGGACAGGAGGGAACGGCCACTAGAAGGTGGCCGA GTCTCGTGGACAGGAGGGAACGGCCACTAGAAGGTGGCCGA < 41bp 1 0.317062487566272 1 0.437239944934845 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BMPR2 ENSG00000204217 CDS Human protein_coding chr2:203421065 chr2:203421049 synonymous SNV . 0 5 hm5C_associated_SNPs_22822 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_23712 DeepMRMD:1;iRNA_m5C:0.999536712157817 23713 chr6 44107303 44107303 1 + C T GBM 44107298 + 44107278 44107318 41 TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG TGCTGGTGGTTGTGGGCGTCCTCTCTGTAGGCATCGTGCTG < 41bp 1 0.414153490942273 1 0.197348058223724 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107298 chr6:44107303 synonymous SNV . 0 26 hm5C_associated_SNPs_22823 0 0 1 0 2 Ribosome 1 0.50022879349079 1 0.999542413018419 hm5C_site_23713 DeepMRMD:1;iRNA_m5C:0.999542413018419 23714 chr19 41128384 41128384 1 + G A GBM 41128394 + 41128374 41128414 41 CCCCTGCCCCGCCGACCCAGCACACCTAGGCAGGGCCCTGT CCCCTGCCCCACCGACCCAGCACACCTAGGCAGGGCCCTGT < 41bp 1 0.18641428568474 1 0.0317881405353546 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41128394 chr19:41128384 nonsynonymous SNV 0.052 2 11 hm5C_associated_SNPs_22825 0 0 1 0 1 Cytosol 1 0.500231656947163 1 0.999536686105674 hm5C_site_23714 DeepMRMD:1;iRNA_m5C:0.999536686105674 23715 chr16 31091658 31091658 1 + G A GBM 31091674 + 31091654 31091694 41 AACCGCATGGCCCTGAAGGACCACCAGAGGCTGCACTCAGA AACCACATGGCCCTGAAGGACCACCAGAGGCTGCACTCAGA < 41bp 1 0.0660758250376503 1 0.0276893675327301 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31091674 chr16:31091658 nonsynonymous SNV 0.989 0 5 hm5C_associated_SNPs_22826 0 0 1 0 0 Endoplasmic reticulum 1 0.500233890334599 1 0.999532219330802 hm5C_site_23715 DeepMRMD:1;iRNA_m5C:0.999532219330802 23716 chr6 33633622 33633622 1 + C T GBM 33633637 + 33633617 33633657 41 TCATCCAGCTGCTGGAAGACCTGGTGTTCTTTGTCAGCGAT TCATCTAGCTGCTGGAAGACCTGGTGTTCTTTGTCAGCGAT < 41bp 1 0.495210378049566 1 0.19605627655983 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33633637 chr6:33633622 stopgain 1.000 1 6 hm5C_associated_SNPs_22828 0 0 1 0 1 Endoplasmic reticulum 1 0.500234382147355 1 0.999531235705291 hm5C_site_23716 DeepMRMD:1;iRNA_m5C:0.999531235705291 23717 chr22 44372062 44372062 1 + C T GBM 44372056 + 44372036 44372076 41 CGGACATTCACTGAAATCATCTCTTTCGGTAACGGTTTCTC CGGACATTCACTGAAATCATCTCTTTTGGTAACGGTTTCTC < 41bp 1 0.157399290203097 1 0.244761615991592 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44372056 chr22:44372062 nonsynonymous SNV 0.993 2 27 hm5C_associated_SNPs_22829 0 0 1 0 1 Cytosol 1 0.500231644166869 1 0.999536711666261 hm5C_site_23717 DeepMRMD:1;iRNA_m5C:0.999536711666261 23718 chr22 44372062 44372062 1 + C T GBM 44372058 + 44372038 44372078 41 GACATTCACTGAAATCATCTCTTTCGGTAACGGTTTCTCTT GACATTCACTGAAATCATCTCTTTTGGTAACGGTTTCTCTT < 41bp 1 0.0540644895666157 1 0.145290940999985 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44372058 chr22:44372062 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_22830 0 0 1 0 1 Cytosol 1 0.500231643921121 1 0.999536712157758 hm5C_site_23718 DeepMRMD:1;iRNA_m5C:0.999536712157758 23719 chr17 62223710 62223710 1 + G C GBM 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCGCTGTCTTTCAGCCCCCGCCGA < 41bp 1 0.292321450422004 1 0.0620604753494263 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223710 . . 0 29 hm5C_associated_SNPs_22831 0 0 1 4 0 unknown 1 0.500236973472617 1 0.999526053054766 hm5C_site_23719 DeepMRMD:1;iRNA_m5C:0.999526053054766 23720 chr17 62223710 62223710 1 + G C GBM 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTT < 41bp 1 0.114602585645127 1 0.0474865734577179 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223710 . . 0 25 hm5C_associated_SNPs_22832 0 0 1 4 0 unknown 1 0.500231643961302 1 0.999536712077395 hm5C_site_23720 DeepMRMD:1;iRNA_m5C:0.999536712077395 23721 chr17 62223710 62223710 1 + G C GBM 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTG < 41bp 1 0.146454043582282 1 0.151125758886337 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223710 . . 0 18 hm5C_associated_SNPs_22833 0 0 1 4 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23721 DeepMRMD:1;iRNA_m5C:0.999536712157815 23722 chr17 62223710 62223710 1 + G C GBM 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGG < 41bp 1 0.326526105825973 1 0.105209171772003 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223710 . . 0 17 hm5C_associated_SNPs_22834 0 0 1 4 0 unknown 1 0.500231643952341 1 0.999536712095317 hm5C_site_23722 DeepMRMD:1;iRNA_m5C:0.999536712095317 23723 chr17 62223710 62223710 1 + G C GBM 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGC < 41bp 1 0.187514191396762 1 0.0878905951976776 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223710 . . 0 16 hm5C_associated_SNPs_22835 0 0 1 4 0 unknown 1 0.500231643924176 1 0.999536712151647 hm5C_site_23723 DeepMRMD:1;iRNA_m5C:0.999536712151647 23724 chr17 62223710 62223710 1 + G C GBM 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGCG < 41bp 1 0.121298829297138 1 0.0980886816978455 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223710 . . 0 15 hm5C_associated_SNPs_22836 0 0 1 4 0 unknown 1 0.500231643945372 1 0.999536712109256 hm5C_site_23724 DeepMRMD:1;iRNA_m5C:0.999536712109256 23725 chr17 62223710 62223710 1 + G C GBM 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CGCTGTCTTTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.567608956211679 1 0.464351028203964 experiment 0.864782087576643 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223710 . . 0 11 hm5C_associated_SNPs_22837 0 0 1 4 0 unknown 1 0.500231643921097 1 0.999536712157807 hm5C_site_23725 DeepMRMD:1;iRNA_m5C:0.999536712157807 23726 chr17 62223710 62223710 1 + G C GBM 62223727 + 62223707 62223747 41 TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA TTTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA < 41bp 1 0.25685546917995 1 0.406045585870743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223727 chr17:62223710 . . 0 4 hm5C_associated_SNPs_22838 0 0 1 4 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_23726 DeepMRMD:1;iRNA_m5C:0.999536712157816 23727 chr17 62223710 62223710 1 + G C GBM 62223728 + 62223708 62223748 41 TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT TTCAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT < 41bp 1 0.621759459507057 1 0.288967043161392 experiment 0.756481080985887 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223728 chr17:62223710 . . 0 3 hm5C_associated_SNPs_22839 0 0 1 4 0 unknown 1 0.50023156059765 1 0.999536878804699 hm5C_site_23727 DeepMRMD:1;iRNA_m5C:0.999536878804699 23728 chr5 912022 912022 1 + G A GBM 912029 + 912009 912049 41 CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACATTG CGTGGCCTTCGTGAACAGGGCTGACATCAAGCAGTACATTG < 41bp 1 0.315535807125981 1 0.0256483554840088 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:912029 chr5:912022 nonsynonymous SNV 0.972 5 14 hm5C_associated_SNPs_22840 0 0 1 0 2 Ribosome 1 0.500277314811666 1 0.999445370376668 hm5C_site_23728 DeepMRMD:1;iRNA_m5C:0.999445370376668 23729 chr19 58290976 58290976 1 + G A GBM 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATTATACATCTGAGAGTTCACACTAGAGAAAGGCCTTAT < 41bp 1 0.220131407019482 1 0.0732112228870392 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290976 nonsynonymous SNV 0.971 3 27 hm5C_associated_SNPs_22841 0 0 1 3 0 chromatin 1 0.500231643921015 1 0.99953671215797 hm5C_site_23729 DeepMRMD:1;iRNA_m5C:0.99953671215797 23730 chr19 58290965 58290965 1 + G A GBM 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATTATACATCTGAAAGTTCACACTGGAGAAAGGCCTTAT < 41bp 1 0.210029644836189 1 0.0649387836456299 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290965 nonsynonymous SNV 0.789 2 16 hm5C_associated_SNPs_22842 0 0 1 3 0 chromatin 1 0.50023163665803 1 0.99953672668394 hm5C_site_23730 DeepMRMD:1;iRNA_m5C:0.99953672668394 23731 chr6 111288927 111288927 1 + T C GBM 111288931 + 111288911 111288951 41 AAATAGAAGATTCTGGTCCTCTTATTGATATACCTTCTGAG AAATAGAAGATTCTGGCCCTCTTATTGATATACCTTCTGAG < 41bp 1 0.16661208120104 1 0.104578346014023 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF3C6 ENSG00000155115 CDS Human protein_coding chr6:111288931 chr6:111288927 synonymous SNV . 0 17 hm5C_associated_SNPs_22843 0 0 1 0 0 Ribosome 1 0.500231643920775 1 0.99953671215845 hm5C_site_23731 DeepMRMD:1;iRNA_m5C:0.99953671215845 23732 chr15 74917256 74917256 1 + G A GBM 74917240 + 74917220 74917260 41 TCTGTTTCCTTCCCGGGTACCAGAGGGAAGTCTCAGGTTGC TCTGTTTCCTTCCCGGGTACCAGAGGGAAGTCTCAGATTGC < 41bp 1 0.315960124876826 1 0.85140073299408 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74917240 chr15:74917256 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_22845 0 0 1 0 2 Nucleus 1 0.500231647332459 0.29719853401184 0.999536705335083 hm5C_site_23732 DeepMRMD:0.29719853401184;iRNA_m5C:0.999536705335083 23733 chr11 67378032 67378032 1 + G A GBM 67378025 + 67378005 67378045 41 AAGCCCCGCCTGAAGCCCCCCTTCCCCGCAGACGTGGGTAA AAGCCCCGCCTGAAGCCCCCCTTCCCCACAGACGTGGGTAA < 41bp 1 0.108423700232786 1 0.339995443820953 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378025 chr11:67378032 nonsynonymous SNV 0.145 5 28 hm5C_associated_SNPs_22846 0 0 1 0 1 Ribosome 1 0.500231643921082 1 0.999536712157837 hm5C_site_23733 DeepMRMD:1;iRNA_m5C:0.999536712157837 23734 chr15 57526304 57526304 1 + C A GBM 57526295 + 57526275 57526315 41 AGGTGATGCACTTGGAAAGGCTTTGGCATCTGTGAGTATTG AGGTGATGCACTTGGAAAGGCTTTGGCATATGTGAGTATTG < 41bp 1 0.120473619915855 1 0.0500891804695129 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57526295 chr15:57526304 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_22847 0 0 1 0 2 Cytosol 1 0.500231629703788 1 0.999536740592423 hm5C_site_23734 DeepMRMD:1;iRNA_m5C:0.999536740592423 23735 chr19 50027849 50027849 1 + G A GBM 50027862 + 50027842 50027882 41 ACCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG ACCCTCCAGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG < 41bp 1 0.475641410348139 1 0.746031582355499 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCGRT ENSG00000104870 CDS Human protein_coding chr19:50027862 chr19:50027849 synonymous SNV . 0 8 hm5C_associated_SNPs_22848 0 0 1 0 1 Endoplasmic reticulum 1 0.500231618062723 0.507936835289002 0.999536763874555 hm5C_site_23735 DeepMRMD:0.507936835289002;iRNA_m5C:0.999536763874555 23736 chr11 120776145 120776145 1 + C T GBM 120776153 + 120776133 120776173 41 GGATGGCGTGTACGGCGTTCCCGAGGCCAACGGCACCTGGA GGATGGCGTGTATGGCGTTCCCGAGGCCAACGGCACCTGGA < 41bp 1 0.315495202803369 1 0.732206642627716 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120776153 chr11:120776145 synonymous SNV . 0 13 hm5C_associated_SNPs_22849 0 0 0 0 0 membrane 1 0.500231643855255 0.535586714744568 0.99953671228949 hm5C_site_23736 DeepMRMD:0.535586714744568;iRNA_m5C:0.99953671228949 23737 chr5 54640967 54640967 1 + C T GBM 54640986 + 54640966 54641006 41 TCGAGATGCAGGTGATTTGGCCAAAGGAGACCAGAAAGGGC TTGAGATGCAGGTGATTTGGCCAAAGGAGACCAGAAAGGGC < 41bp 1 0.497280450673027 1 0.641986668109894 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640986 chr5:54640967 stopgain 1.000 1 2 hm5C_associated_SNPs_22850 0 0 1 0 1 Nucleus 1 0.500231643921092 0.716026663780212 0.999536712157815 hm5C_site_23737 DeepMRMD:0.716026663780212;iRNA_m5C:0.999536712157815 23738 chr5 36985783 36985783 1 + G A GBM 36985791 + 36985771 36985811 41 CAGAGCGACATCGAGGGGATCAGTCTAGGGTTCGAAGACCA CAGAGCGACATCAAGGGGATCAGTCTAGGGTTCGAAGACCA < 41bp 1 0.110981464000963 1 0.0358218848705292 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:36985791 chr5:36985783 nonsynonymous SNV 0.992 3 13 hm5C_associated_SNPs_22851 1 0 1 0 0 Nucleus 1 0.500231643878426 1 0.999536712243148 hm5C_site_23738 DeepMRMD:1;iRNA_m5C:0.999536712243148 Cornelia de Lange Syndrome Cornelia de Lange Syndrome 23739 chr20 37076736 37076736 1 + C T GBM 37076732 + 37076712 37076752 41 TTTGCTCTTTTCTGCGCCTGCATTCGTAAGTGATCACGGGC TTTGCTCTTTTCTGCGCCTGCATTTGTAAGTGATCACGGGC < 41bp 1 0.0588231050706515 1 0.0421150326728821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA71E ENSG00000174365 ncRNA_exonic Human processed_transcript chr20:37076732 chr20:37076736 . . 0 25 hm5C_associated_SNPs_22852 0 0 1 0 0 unknown 1 0.500231643919121 1 0.999536712161758 hm5C_site_23739 DeepMRMD:1;iRNA_m5C:0.999536712161758 23740 chr1 44069411 44069411 1 + C T GBM 44069418 + 44069398 44069438 41 CGGGCCGACGAGGCGCGGCCCAACACCATAGATTTCGGCAA CGGGCCGACGAGGTGCGGCCCAACACCATAGATTTCGGCAA < 41bp 1 0.393822045927371 1 0.06315878033638 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44069418 chr1:44069411 nonsynonymous SNV 0.525 0 14 hm5C_associated_SNPs_22853 0 0 1 0 0 Ribosome 1 0.500231645045237 1 0.999536709909526 hm5C_site_23740 DeepMRMD:1;iRNA_m5C:0.999536709909526 23741 chr1 206902132 206902132 1 + G A GBM 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGAATCGTGGATGTGTACGAGAATCT < 41bp 1 0.602220038091721 1 0.338716685771942 experiment 0.795559923816557 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902132 synonymous SNV . 0 18 hm5C_associated_SNPs_22854 0 0 1 0 2 Ribosome 1 0.500279902994852 1 0.999440194010296 hm5C_site_23741 DeepMRMD:1;iRNA_m5C:0.999440194010296 23742 chr9 95869973 95869973 1 + C T GBM 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CTGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC < 41bp 1 0.0542075868233845 1 0.0534083247184753 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95869973 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_22855 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23742 DeepMRMD:1;iRNA_m5C:0.999536712157815 23743 chr17 79668136 79668136 1 + C T GBM 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATCGTGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.223038261872852 1 0.286565184593201 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668136 nonsynonymous SNV 0.258 0 9 hm5C_associated_SNPs_22856 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23743 DeepMRMD:1;iRNA_m5C:0.999536712157815 23744 chr12 95868051 95868051 1 + G T GBM 95868059 + 95868039 95868079 41 CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA CTCTACGGCTGATGAAGCAGCCAAGAAAAAAAGACGAAAGA < 41bp 1 0.279349601110993 1 0.508952021598816 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95868059 chr12:95868051 nonsynonymous SNV 0.980 2 13 hm5C_associated_SNPs_22857 0 0 1 0 1 Ribosome 1 0.500231770343074 0.982095956802368 0.999536459313851 hm5C_site_23744 DeepMRMD:0.982095956802368;iRNA_m5C:0.999536459313851 23745 chr19 50338286 50338286 1 + G A GBM 50338268 + 50338248 50338288 41 CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCG CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCACG < 41bp 1 0.558464831951727 1 0.752507150173187 experiment 0.883070336096545 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338268 chr19:50338286 nonsynonymous SNV 0.802 5 39 hm5C_associated_SNPs_22858 0 0 0 0 1 chromatin 1 0.500231643921142 0.494985699653626 0.999536712157716 hm5C_site_23745 DeepMRMD:0.494985699653626;iRNA_m5C:0.999536712157716 23746 chr14 23070604 23070604 1 + C T GBM 23070600 + 23070580 23070620 41 GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGCCCCACTTCC GCTGGCTGAGTAGCTGGCTGCCCATGTGGCGCCCCACTTCC < 41bp 1 0.392851597541633 1 0.152500182390213 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23070600 chr14:23070604 nonsynonymous SNV 0.884 2 25 hm5C_associated_SNPs_22859 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23746 DeepMRMD:1;iRNA_m5C:0.999536712157815 23747 chr1 183083807 183083807 1 + G A GBM 183083799 + 183083779 183083819 41 TGTGAGAGGTGCCGAGAGAACTTCTTCCGCCTTGGCAACAA TGTGAGAGGTGCCGAGAGAACTTCTTCCACCTTGGCAACAA < 41bp 1 0.418565000395794 1 0.160152912139893 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183083799 chr1:183083807 nonsynonymous SNV 0.993 4 29 hm5C_associated_SNPs_22860 0 0 1 0 1 Ribosome 1 0.500231643930543 1 0.999536712138914 hm5C_site_23747 DeepMRMD:1;iRNA_m5C:0.999536712138914 23748 chr1 206902127 206902127 1 + G A GBM 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCATACGGATCGTGGATGTGTACGAGAATCT < 41bp 1 0.418005058729851 1 0.219996631145477 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902127 nonsynonymous SNV 0.670 2 13 hm5C_associated_SNPs_22861 0 0 1 0 2 Ribosome 1 0.500235931962606 1 0.999528136074788 hm5C_site_23748 DeepMRMD:1;iRNA_m5C:0.999528136074788 23749 chr20 23350291 23350291 1 + C T GBM 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCCTCCAGCGCCACCGTCGCATCCA < 41bp 1 0.470570606550557 1 0.669760227203369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350291 synonymous SNV . 0 33 hm5C_associated_SNPs_22863 0 0 0 0 2 Cytosol 1 0.500231643920876 0.660479545593262 0.999536712158249 hm5C_site_23749 DeepMRMD:0.660479545593262;iRNA_m5C:0.999536712158249 23750 chr19 39979214 39979214 1 + G A GBM 39979223 + 39979203 39979243 41 ACGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC ACGTGCGAACCATGCTGGAGCACTATGCCCTGGAGGATGAC < 41bp 1 0.391509701725005 1 0.0630949437618256 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39979223 chr19:39979214 nonsynonymous SNV 0.946 3 12 hm5C_associated_SNPs_22864 0 0 1 0 2 Ribosome 1 0.500231643921084 1 0.999536712157832 hm5C_site_23750 DeepMRMD:1;iRNA_m5C:0.999536712157832 23751 chr17 1634184 1634184 1 + G A GBM 1634199 + 1634179 1634219 41 CGCCCGCCTGTATGGGGAGCCTGTCCTCACCTACCAGTACC CGCCCACCTGTATGGGGAGCCTGTCCTCACCTACCAGTACC < 41bp 1 0.100093238258645 1 0.0833939909934998 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1634199 chr17:1634184 nonsynonymous SNV 0.693 0 6 hm5C_associated_SNPs_22865 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_23751 DeepMRMD:1;iRNA_m5C:0.999536712157815 23752 chr19 42839498 42839498 1 + C T GBM 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCGTCCTATACAACTTCTCTGCCAACACCTGGGAGTCTT < 41bp 1 0.250440772014992 1 0.340606391429901 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839498 synonymous SNV . 0 22 hm5C_associated_SNPs_22867 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23752 DeepMRMD:1;iRNA_m5C:0.999536712157815 23753 chr12 31242059 31242059 1 + C T GBM 31242078 + 31242058 31242098 41 TCGGCTGGTCTCCCTTGGCTCCCGGCAGGTAAACAGTAGCC TTGGCTGGTCTCCCTTGGCTCCCGGCAGGTAAACAGTAGCC < 41bp 1 0.449885330038308 1 0.288096606731415 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31242078 chr12:31242059 nonsynonymous SNV 0.001 4 2 hm5C_associated_SNPs_22868 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23753 DeepMRMD:1;iRNA_m5C:0.999536712157815 23754 chr15 40259731 40259731 1 + C T GBM 40259728 + 40259708 40259748 41 CAGGCCCCATCCCTGTGCATCAGCTTCGCAGGTACACAGCT CAGGCCCCATCCCTGTGCATCAGTTTCGCAGGTACACAGCT < 41bp 1 0.161730657738214 1 0.0911943018436432 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40259728 chr15:40259731 nonsynonymous SNV 0.895 4 24 hm5C_associated_SNPs_22869 0 0 1 0 0 Ribosome 1 0.500231644401112 1 0.999536711197776 hm5C_site_23754 DeepMRMD:1;iRNA_m5C:0.999536711197776 23755 chr5 177019589 177019589 1 + G A GBM 177019580 + 177019560 177019600 41 CCCTGCTTCCCTCAAGGAAACTACCGGACGCAGCTGTATGA CCCTGCTTCCCTCAAGGAAACTACCGGACACAGCTGTATGA < 41bp 1 0.363006117178649 1 0.0874879062175751 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019580 chr5:177019589 synonymous SNV . 0 30 hm5C_associated_SNPs_22870 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23755 DeepMRMD:1;iRNA_m5C:0.999536712157815 23756 chr5 177019589 177019589 1 + G A GBM 177019588 + 177019568 177019608 41 CCCTCAAGGAAACTACCGGACGCAGCTGTATGACAAGCAGC CCCTCAAGGAAACTACCGGACACAGCTGTATGACAAGCAGC < 41bp 1 0.525360589937378 1 0.137803882360458 experiment 0.949278820125244 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019588 chr5:177019589 synonymous SNV . 0 22 hm5C_associated_SNPs_22871 0 0 1 0 2 Ribosome 1 0.500230301301597 1 0.999539397396805 hm5C_site_23756 DeepMRMD:1;iRNA_m5C:0.999539397396805 23757 chr5 177019589 177019589 1 + G A GBM 177019601 + 177019581 177019621 41 TACCGGACGCAGCTGTATGACAAGCAGCGGGAGGAGTACCA TACCGGACACAGCTGTATGACAAGCAGCGGGAGGAGTACCA < 41bp 1 0.514517024476252 1 0.495074301958084 experiment 0.970965951047496 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019601 chr5:177019589 synonymous SNV . 0 9 hm5C_associated_SNPs_22873 0 0 1 0 2 Ribosome 1 0.500231643944533 1 0.999536712110935 hm5C_site_23757 DeepMRMD:1;iRNA_m5C:0.999536712110935 23758 chr5 131940547 131940547 1 + A G GBM 131940539 + 131940519 131940559 41 ATCGTAAGCTTATACAGGACCAGCAGGAACAGATTCAACAT ATCGTAAGCTTATACAGGACCAGCAGGAGCAGATTCAACAT < 41bp 1 0.696748563879538 1 0.179740399122238 experiment 0.606502872240923 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131940539 chr5:131940547 synonymous SNV . 0 29 hm5C_associated_SNPs_22874 0 0 1 0 1 Cytosol 1 0.500231643914843 1 0.999536712170314 hm5C_site_23758 DeepMRMD:1;iRNA_m5C:0.999536712170314 23759 chr15 76630252 76630252 1 + G T GBM 76630260 + 76630240 76630280 41 GTACCTGGACGAGACGTGCACGTGCTTCGTGAGAGACGGGA GTACCTGGACGATACGTGCACGTGCTTCGTGAGAGACGGGA < 41bp 1 0.26600978264759 1 0.252146333456039 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630260 chr15:76630252 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_22875 0 0 1 0 1 Cytosol 1 0.500231641690289 1 0.999536716619422 hm5C_site_23759 DeepMRMD:1;iRNA_m5C:0.999536716619422 23760 chr1 43917153 43917153 1 + A G GBM 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT AGCCCAGCAGCCCCGGAGAGCTGAATCTCCCCTATCTGTTT < 41bp 1 0.611527942640379 1 0.325560688972473 experiment 0.776944114719241 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917153 nonsynonymous SNV 0.991 2 27 hm5C_associated_SNPs_22876 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_23760 DeepMRMD:1;iRNA_m5C:0.999536712157817 23761 chr21 44450022 44450022 1 + G A GBM 44450012 + 44449992 44450032 41 TGCCGCAGGAGCTGTTGTCACCATCACCACGCCCGTGAACA TGCCGCAGGAGCTGTTGTCACCATCACCACACCCGTGAACA < 41bp 1 0.0745026041075308 1 0.294167220592499 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44450012 chr21:44450022 synonymous SNV . 0 31 hm5C_associated_SNPs_22877 0 0 0 0 1 Ribosome 1 0.500231001781506 1 0.999537996436988 hm5C_site_23761 DeepMRMD:1;iRNA_m5C:0.999537996436988 23762 chr17 47004377 47004377 1 + C T GBM 47004386 + 47004366 47004406 41 CCCTCTTGATGCGCCTGGGACTGATACGTCAGAAAGTGCTG CCCTCTTGATGTGCCTGGGACTGATACGTCAGAAAGTGCTG < 41bp 1 0.244763351120992 1 0.131470680236816 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2Z ENSG00000159202 CDS Human protein_coding chr17:47004386 chr17:47004377 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_22878 0 0 1 0 1 Ribosome 1 0.500228068016019 1 0.999543863967961 hm5C_site_23762 DeepMRMD:1;iRNA_m5C:0.999543863967961 23763 chr17 33932748 33932748 1 + C A GBM 33932759 + 33932739 33932779 41 CGTAGTGAACTGTATGCAGACTGACAATCTGGAACTAAAGA CGTAGTGAAATGTATGCAGACTGACAATCTGGAACTAAAGA < 41bp 1 0.124918521308821 1 0.0213044285774231 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:33932759 chr17:33932748 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_22879 0 0 1 0 1 Cytosol 1 0.500231643730267 1 0.999536712539466 hm5C_site_23763 DeepMRMD:1;iRNA_m5C:0.999536712539466 23764 chr19 4793228 4793228 1 + C T GBM 4793215 + 4793195 4793235 41 CTACGTGCTTCAGGACCGGGCCGCCAAAGGCAGCCTGGGCA CTACGTGCTTCAGGACCGGGCCGCCAAAGGCAGTCTGGGCA < 41bp 1 0.0908288453115424 1 0.120585471391678 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FEM1A ENSG00000141965 CDS Human protein_coding chr19:4793215 chr19:4793228 synonymous SNV . 0 34 hm5C_associated_SNPs_22880 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_23764 DeepMRMD:1;iRNA_m5C:0.999536712157815 23765 chr17 47004360 47004360 1 + A G GBM 47004350 + 47004330 47004370 41 CTTTTGGAGAGAAGCGGGGCCACTTTGACTACCAGTCCCTC CTTTTGGAGAGAAGCGGGGCCACTTTGACTGCCAGTCCCTC < 41bp 1 0.209847595799193 1 0.0727498531341553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2Z ENSG00000159202 CDS Human protein_coding chr17:47004350 chr17:47004360 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_22881 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23765 DeepMRMD:1;iRNA_m5C:0.999536712157815 23766 chr12 132325349 132325349 1 + C T GBM 132325361 + 132325341 132325381 41 CACCACACCGCCGGGGACACCCACTTTGACGATGACGAGGC CACCACACTGCCGGGGACACCCACTTTGACGATGACGAGGC < 41bp 1 0.223948662188515 1 0.273419797420502 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325361 chr12:132325349 synonymous SNV . 0 9 hm5C_associated_SNPs_22882 0 0 0 0 1 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_23766 DeepMRMD:1;iRNA_m5C:0.999536712157812 23767 chr1 207498012 207498012 1 + G A GBM 207498032 + 207498012 207498052 41 GTTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGC ATTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGC < 41bp 1 0.22863351634413 1 0.0970371961593628 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207498032 chr1:207498012 nonsynonymous SNV 0.004 4 1 hm5C_associated_SNPs_22883 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23767 DeepMRMD:1;iRNA_m5C:0.999536712157815 23768 chr6 33633655 33633655 1 + G A GBM 33633637 + 33633617 33633657 41 TCATCCAGCTGCTGGAAGACCTGGTGTTCTTTGTCAGCGAT TCATCCAGCTGCTGGAAGACCTGGTGTTCTTTGTCAGCAAT < 41bp 1 0.462018296269442 1 0.153171181678772 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33633637 chr6:33633655 nonsynonymous SNV 0.978 4 39 hm5C_associated_SNPs_22884 0 0 1 0 2 Endoplasmic reticulum 1 0.500238953164629 1 0.999522093670742 hm5C_site_23768 DeepMRMD:1;iRNA_m5C:0.999522093670742 23769 chr3 184039151 184039151 1 + C T GBM 184039162 + 184039142 184039182 41 CCCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCA CCCAGCCTTTGTCGCCTTCTCCGACCCCATCACCATCCCCA < 41bp 1 0.260048351196711 1 0.331364512443542 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039162 chr3:184039151 nonsynonymous SNV 0.995 3 10 hm5C_associated_SNPs_22885 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_23769 DeepMRMD:1;iRNA_m5C:0.999536712157815 23770 chr3 184039151 184039151 1 + C T GBM 184039163 + 184039143 184039183 41 CCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCAG CCAGCCTTTGTCGCCTTCTCCGACCCCATCACCATCCCCAG < 41bp 1 0.411987473623114 1 0.801078200340271 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039163 chr3:184039151 nonsynonymous SNV 0.995 3 9 hm5C_associated_SNPs_22886 0 0 1 0 1 Nucleus 1 0.500231641795099 0.397843599319458 0.999536716409802 hm5C_site_23770 DeepMRMD:0.397843599319458;iRNA_m5C:0.999536716409802 23771 chr2 228398390 228398390 1 + G T GBM 228398373 + 228398353 228398393 41 TTCCCAGAGTCATCAAACAGCATCAGCTGTTAGTAAAGTTT TTCCCAGAGTCATCAAACAGCATCAGCTGTTAGTAAATTTT < 41bp 1 0.348634423540948 1 0.0653312206268311 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228398373 chr2:228398390 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_22887 0 0 1 0 1 Cytosol 1 0.500231643921274 1 0.999536712157452 hm5C_site_23771 DeepMRMD:1;iRNA_m5C:0.999536712157452 23772 chr3 17056231 17056231 1 + G A GBM 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG ACCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG < 41bp 1 0.512800315160789 1 0.161517381668091 experiment 0.974399369678421 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056231 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_22888 0 0 1 0 1 nucleus 1 0.500231637268521 1 0.999536725462957 hm5C_site_23772 DeepMRMD:1;iRNA_m5C:0.999536725462957 23773 chr8 64099225 64099225 1 + G A GBM 64099222 + 64099202 64099242 41 TTTGAGCAGCAGTGGTATGACTAGCATTGCAACCAATAGTG TTTGAGCAGCAGTGGTATGACTAACATTGCAACCAATAGTG < 41bp 1 0.459964131106833 1 0.0698038339614868 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control YTHDF3 ENSG00000185728 CDS Human protein_coding chr8:64099222 chr8:64099225 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_22889 0 0 1 0 0 chromatin 1 0.500229656577305 1 0.99954068684539 hm5C_site_23773 DeepMRMD:1;iRNA_m5C:0.99954068684539 23774 chr20 3802814 3802814 1 + A G GBM 3802800 + 3802780 3802820 41 CTCATTCACACCTTGAGGGCCCCGAATACTGAGGACACGGG CTCATTCACACCTTGAGGGCCCCGAATACTGAGGGCACGGG < 41bp 1 0.423557904359947 1 0.0489690005779266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3802800 chr20:3802814 nonsynonymous SNV 0.039 0 35 hm5C_associated_SNPs_22890 0 0 1 0 1 Ribosome 1 0.500231650928553 1 0.999536698142895 hm5C_site_23774 DeepMRMD:1;iRNA_m5C:0.999536698142895 23775 chr11 119045948 119045948 1 + C A GBM 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTATGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA < 41bp 1 0.364927116599647 1 0.261979043483734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045948 nonsynonymous SNV 0.978 3 8 hm5C_associated_SNPs_22892 0 0 0 0 1 exosome 1 0.500231643921172 1 0.999536712157655 hm5C_site_23775 DeepMRMD:1;iRNA_m5C:0.999536712157655 23776 chr2 235949756 235949756 1 + C T GBM 235949741 + 235949721 235949761 41 ACATCCCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAAC ACATCCCCTCCTCCTATGTGCAGCCCTTGAACTACTGGAAC < 41bp 1 0.152863443566091 1 0.128964126110077 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235949741 chr2:235949756 nonsynonymous SNV 0.981 3 36 hm5C_associated_SNPs_22893 0 0 1 0 0 cytosol 1 0.500231643921161 1 0.999536712157677 hm5C_site_23776 DeepMRMD:1;iRNA_m5C:0.999536712157677 23777 chr2 235949756 235949756 1 + C T GBM 235949744 + 235949724 235949764 41 TCCCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAACTCA TCCCCTCCTCCTATGTGCAGCCCTTGAACTACTGGAACTCA < 41bp 1 0.0173740505257064 1 0.0715039968490601 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235949744 chr2:235949756 nonsynonymous SNV 0.981 3 33 hm5C_associated_SNPs_22894 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23777 DeepMRMD:1;iRNA_m5C:0.999536712157815 23778 chr2 235949756 235949756 1 + C T GBM 235949745 + 235949725 235949765 41 CCCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAACTCAA CCCCTCCTCCTATGTGCAGCCCTTGAACTACTGGAACTCAA < 41bp 1 0.0246509480102623 1 0.106940418481827 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235949745 chr2:235949756 nonsynonymous SNV 0.981 3 32 hm5C_associated_SNPs_22895 0 0 1 0 0 cytosol 1 0.500231644016022 1 0.999536711967956 hm5C_site_23778 DeepMRMD:1;iRNA_m5C:0.999536711967956 23779 chr7 98589837 98589837 1 + A G GBM 98589838 + 98589818 98589858 41 TGAAAATAGAACAGCGGGAACGCTACAAGAGCGGTACGTCT TGAAAATAGAACAGCGGGAGCGCTACAAGAGCGGTACGTCT < 41bp 1 0.16493409420434 1 0.480531632900238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98589838 chr7:98589837 synonymous SNV . 0 20 hm5C_associated_SNPs_22896 0 0 0 0 2 Nucleus 1 0.500231643921125 1 0.999536712157749 hm5C_site_23779 DeepMRMD:1;iRNA_m5C:0.999536712157749 23780 chr1 224553692 224553692 1 + C T GBM 224553676 + 224553656 224553696 41 CTTCTCAACTTACCTGTTGCCACTTGGAATATATATCGGTG CTTCTCAACTTACCTGTTGCCACTTGGAATATATATTGGTG < 41bp 1 0.264947798822209 1 0.381448715925217 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNIH4 ENSG00000143771 CDS Human protein_coding chr1:224553676 chr1:224553692 stopgain 0.999 2 37 hm5C_associated_SNPs_22897 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23780 DeepMRMD:1;iRNA_m5C:0.999536712157815 23781 chr9 97767852 97767852 1 + G T GBM 97767847 + 97767827 97767867 41 ACGAAATGGATTGGAGTGAACCGGAGACCCCGAAAACGGAA ACGAAATGGATTGGAGTGAACCGGATACCCCGAAAACGGAA < 41bp 1 0.625180918517232 1 0.532237946987152 experiment 0.749638162965535 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97767847 chr9:97767852 nonsynonymous SNV 0.894 3 26 hm5C_associated_SNPs_22898 0 0 1 0 2 Cytosol 1 0.500231643921093 0.935524106025696 0.999536712157815 hm5C_site_23781 DeepMRMD:0.935524106025696;iRNA_m5C:0.999536712157815 23782 chrX 107814694 107814694 1 + C T GBM 107814691 + 107814671 107814711 41 GTTTTCCTGGTTTACAGGGTCCTCCAGTAAGTTATAAAATT GTTTTCCTGGTTTACAGGGTCCTTCAGTAAGTTATAAAATT < 41bp 1 0.00400761248632255 1 0.0218939483165741 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107814691 chrX:107814694 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_22899 0 0 1 0 2 Ribosome 1 0.500231643901595 1 0.99953671219681 hm5C_site_23782 DeepMRMD:1;iRNA_m5C:0.99953671219681 23783 chr11 61584149 61584149 1 + G A GBM 61584155 + 61584135 61584175 41 CTCGCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGT CTCGCACCCTGAGCACTGGGCCACCTCGTCCCAGGTGAAGT < 41bp 1 0.031534014335105 1 0.0493794977664948 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584155 chr11:61584149 nonsynonymous SNV 0.819 3 15 hm5C_associated_SNPs_22900 0 0 1 0 1 unknown 1 0.500231643921076 1 0.999536712157848 hm5C_site_23783 DeepMRMD:1;iRNA_m5C:0.999536712157848 23784 chr11 61584149 61584149 1 + G A GBM 61584156 + 61584136 61584176 41 TCGCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTA TCGCACCCTGAGCACTGGGCCACCTCGTCCCAGGTGAAGTA < 41bp 1 0.165437087141444 1 0.059850811958313 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584156 chr11:61584149 nonsynonymous SNV 0.819 3 14 hm5C_associated_SNPs_22901 0 0 1 0 1 unknown 1 0.499939316646701 1 1 hm5C_site_23784 DeepMRMD:1;iRNA_m5C:1 23785 chr11 61584149 61584149 1 + G A GBM 61584158 + 61584138 61584178 41 GCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGC GCACCCTGAGCACTGGGCCACCTCGTCCCAGGTGAAGTAGC < 41bp 1 0.0734566750862709 1 0.0579234659671783 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584158 chr11:61584149 nonsynonymous SNV 0.819 3 12 hm5C_associated_SNPs_22902 0 0 1 0 1 unknown 1 0.500231612167042 1 0.999536775665917 hm5C_site_23785 DeepMRMD:1;iRNA_m5C:0.999536775665917 23786 chr11 61584149 61584149 1 + G A GBM 61584159 + 61584139 61584179 41 CACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCG CACCCTGAGCACTGGGCCACCTCGTCCCAGGTGAAGTAGCG < 41bp 1 0.379943132477334 1 0.226368874311447 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584159 chr11:61584149 nonsynonymous SNV 0.819 3 11 hm5C_associated_SNPs_22903 0 0 1 0 1 unknown 1 0.500231643905123 1 0.999536712189753 hm5C_site_23786 DeepMRMD:1;iRNA_m5C:0.999536712189753 23787 chr11 61584149 61584149 1 + G A GBM 61584161 + 61584141 61584181 41 CCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCG CCCTGAGCACTGGGCCACCTCGTCCCAGGTGAAGTAGCGCG < 41bp 1 0.223173535037796 1 0.445814937353134 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584161 chr11:61584149 nonsynonymous SNV 0.819 3 9 hm5C_associated_SNPs_22904 0 0 1 0 1 unknown 1 0.500231643995921 1 0.999536712008158 hm5C_site_23787 DeepMRMD:1;iRNA_m5C:0.999536712008158 23788 chr11 61584149 61584149 1 + G A GBM 61584164 + 61584144 61584184 41 TGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGG TGAGCACTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGG < 41bp 1 0.452046887354591 1 0.78781920671463 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584164 chr11:61584149 nonsynonymous SNV 0.819 3 6 hm5C_associated_SNPs_22905 0 0 1 0 1 unknown 1 0.500231643921092 0.42436158657074 0.999536712157815 hm5C_site_23788 DeepMRMD:0.42436158657074;iRNA_m5C:0.999536712157815 23789 chr11 61584149 61584149 1 + G A GBM 61584165 + 61584145 61584185 41 GAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGGT GAGCACTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGGT < 41bp 1 0.430428516653429 1 0.817209959030151 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584165 chr11:61584149 nonsynonymous SNV 0.819 3 5 hm5C_associated_SNPs_22906 0 0 1 0 1 unknown 1 0.500231645034919 0.365580081939698 0.999536709930162 hm5C_site_23789 DeepMRMD:0.365580081939698;iRNA_m5C:0.999536709930162 23790 chr15 25222149 25222149 1 + C T GBM 25222166 + 25222146 25222186 41 TGTCCGAGGAGTTGGGGGACCATCCCAGCAGGTGAGGAACC TGTTCGAGGAGTTGGGGGACCATCCCAGCAGGTGAGGAACC < 41bp 1 0.134702079794535 1 0.221936404705048 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222166 chr15:25222149 synonymous SNV . 0 4 hm5C_associated_SNPs_22908 0 0 1 0 1 Cytosol 1 0.50023164392104 1 0.99953671215792 hm5C_site_23790 DeepMRMD:1;iRNA_m5C:0.99953671215792 23791 chr15 80450503 80450503 1 + C A GBM 80450510 + 80450490 80450530 41 AACACCAGGATGTCTTCAATCAGGTAGGACATTGTGAAACG AACACCAGGATGTATTCAATCAGGTAGGACATTGTGAAACG < 41bp 1 0.64752128305105 1 0.544570744037628 experiment 0.704957433897901 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAH ENSG00000103876 CDS Human protein_coding chr15:80450510 chr15:80450503 synonymous SNV . 0 14 hm5C_associated_SNPs_22909 0 0 1 0 1 Cytosol 1 0.500231637048534 0.910858511924744 0.999536725902932 hm5C_site_23791 DeepMRMD:0.910858511924744;iRNA_m5C:0.999536725902932 23792 chr14 23237274 23237274 1 + C T GBM 23237294 + 23237274 23237314 41 CGCTGAACTGGGGCTGGGGTCATACACCCCAGTGGGACTGA TGCTGAACTGGGGCTGGGGTCATACACCCCAGTGGGACTGA < 41bp 1 0.236512774286567 1 0.345553457736969 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23237294 chr14:23237274 synonymous SNV . 0 1 hm5C_associated_SNPs_22910 0 0 1 0 0 Cytosol 1 0.500231635157921 1 0.999536729684158 hm5C_site_23792 DeepMRMD:1;iRNA_m5C:0.999536729684158 23793 chr22 38471012 38471012 1 + A G GBM 38470992 + 38470972 38471012 41 GAGGTAGACCTGGCGCACACCACATTGGCCTATGGCCTCAA GAGGTAGACCTGGCGCACACCACATTGGCCTATGGCCTCAG < 41bp 1 0.514765096651903 1 0.677240967750549 experiment 0.970469806696194 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PICK1 ENSG00000100151 CDS Human protein_coding chr22:38470992 chr22:38471012 nonsynonymous SNV 0.045 0 41 hm5C_associated_SNPs_22911 0 0 0 0 0 Ribosome 1 0.500231640087414 0.645518064498902 0.999536719825171 hm5C_site_23793 DeepMRMD:0.645518064498902;iRNA_m5C:0.999536719825171 23794 chr5 33455769 33455769 1 + G T GBM 33455756 + 33455736 33455776 41 AGAAAATCATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA AGAAAATCATTAAAGAAAAACAAGCTTTTGAAATACTGGAA < 41bp 1 0.305728720486169 1 0.312661230564117 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33455756 chr5:33455769 nonsynonymous SNV 0.997 4 34 hm5C_associated_SNPs_22912 0 0 1 0 2 Nucleus 1 0.500231650143397 1 0.999536699713206 hm5C_site_23794 DeepMRMD:1;iRNA_m5C:0.999536699713206 23795 chr4 123260537 123260537 1 + C A GBM 123260543 + 123260523 123260563 41 GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAG GAGTGGAACAAAGAATTCTGCTAGCAAAACTGGAATACCAG < 41bp 1 0.119484747318636 1 0.168009340763092 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123260543 chr4:123260537 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_22913 0 0 1 0 1 Nucleus 1 0.500231643920248 1 0.999536712159504 hm5C_site_23795 DeepMRMD:1;iRNA_m5C:0.999536712159504 23796 chr20 19937366 19937366 1 + G A GBM 19937385 + 19937365 19937405 41 CGGCTCCTCCACACCCACCCCATATGGCTGCAGCTGAGTCT CAGCTCCTCCACACCCACCCCATATGGCTGCAGCTGAGTCT < 41bp 1 0.146303989094062 1 0.215769171714783 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19937385 chr20:19937366 nonsynonymous SNV 0.995 1 2 hm5C_associated_SNPs_22914 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23796 DeepMRMD:1;iRNA_m5C:0.999536712157815 23797 chr7 91735020 91735020 1 + C T GBM 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTTTTGGTTCGACGGTGGCATTGAGTCACAGGTTCTGTT < 41bp 1 0.061354559578008 1 0.145340830087662 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735020 stopgain 0.997 0 24 hm5C_associated_SNPs_22915 0 0 1 0 2 Nucleus 1 0.50023164460842 1 0.99953671078316 hm5C_site_23797 DeepMRMD:1;iRNA_m5C:0.99953671078316 23798 chr11 48134396 48134396 1 + G T GBM 48134404 + 48134384 48134424 41 CTTTCATAAACAGAATGGAACTGGAACACCTCAGGTGGAAA CTTTCATAAACATAATGGAACTGGAACACCTCAGGTGGAAA < 41bp 1 0.493805229330742 1 0.35454648733139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48134404 chr11:48134396 nonsynonymous SNV 0.002 0 13 hm5C_associated_SNPs_22916 0 0 1 0 1 Endoplasmic reticulum 1 0.500231688712721 1 0.999536622574559 hm5C_site_23798 DeepMRMD:1;iRNA_m5C:0.999536622574559 23799 chr7 135291554 135291554 1 + C A GBM 135291549 + 135291529 135291569 41 TTCGTCATGAAACAAGAATCCACATCTTGAATCTTCTCATT TTCGTCATGAAACAAGAATCCACATATTGAATCTTCTCATT < 41bp 1 0.252667358592442 1 0.109789729118347 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291549 chr7:135291554 synonymous SNV . 0 26 hm5C_associated_SNPs_22917 0 0 1 0 1 Cytosol 1 0.500231815795785 1 0.999536368408431 hm5C_site_23799 DeepMRMD:1;iRNA_m5C:0.999536368408431 23800 chr14 64989897 64989897 1 + C A GBM 64989887 + 64989867 64989907 41 GTGGTTGAACATATGTCTAGCTGCTTAGATCAAGATATGTT GTGGTTGAACATATGTCTAGCTGCTTAGATAAAGATATGTT < 41bp 1 0.383617187398886 1 0.0924907028675079 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64989887 chr14:64989897 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_22918 0 0 1 0 0 Cytosol 1 0.500231646882614 1 0.999536706234772 hm5C_site_23800 DeepMRMD:1;iRNA_m5C:0.999536706234772 23801 chr12 123875317 123875317 1 + C A GBM 123875303 + 123875283 123875323 41 AAGTCAAATGCCAGGGGAAACCATTAGCCGGAATCTACAGG AAGTCAAATGCCAGGGGAAACCATTAGCCGGAATATACAGG < 41bp 1 0.0468692664379921 1 0.0654144287109375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123875303 chr12:123875317 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_22919 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23801 DeepMRMD:1;iRNA_m5C:0.999536712157815 23802 chr12 123875317 123875317 1 + C A GBM 123875304 + 123875284 123875324 41 AGTCAAATGCCAGGGGAAACCATTAGCCGGAATCTACAGGA AGTCAAATGCCAGGGGAAACCATTAGCCGGAATATACAGGA < 41bp 1 0.594557887500652 1 0.361106395721436 experiment 0.810884224998696 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123875304 chr12:123875317 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_22920 0 0 0 0 1 Cytosol 1 0.500231644037664 1 0.999536711924672 hm5C_site_23802 DeepMRMD:1;iRNA_m5C:0.999536711924672 23803 chr10 103827241 103827241 1 + C A GBM 103827230 + 103827210 103827250 41 GCCCCTCCAGTCCCCTGCTTCGAAGTGAAATCTTCAAACTG GCCCCTCCAGTCCCCTGCTTCGAAGTGAAATATTCAAACTG < 41bp 1 0.531329793798009 1 0.444443702697754 experiment 0.937340412403981 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control HPS6 ENSG00000166189 CDS Human protein_coding chr10:103827230 chr10:103827241 synonymous SNV . 0 32 hm5C_associated_SNPs_22921 0 0 0 0 0 Ribosome 1 0.500231643830256 1 0.999536712339488 hm5C_site_23803 DeepMRMD:1;iRNA_m5C:0.999536712339488 23804 chr20 47639675 47639675 1 + C T GBM 47639658 + 47639638 47639678 41 TTGATACAGACCATTGACAACATTGTGTTCTACCCTGCGAC TTGATACAGACCATTGACAACATTGTGTTCTACCCTGTGAC < 41bp 1 0.0893341727698255 1 0.107313334941864 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47639658 chr20:47639675 nonsynonymous SNV 0.415 3 38 hm5C_associated_SNPs_22922 0 0 1 0 2 Cytosol 1 0.500231698936342 1 0.999536602127317 hm5C_site_23804 DeepMRMD:1;iRNA_m5C:0.999536602127317 23805 chr19 6374343 6374343 1 + C A GBM 6374323 + 6374303 6374343 41 CCCCGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACC CCCCGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACA < 41bp 1 0.201658861709931 1 0.0887159705162048 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALKBH7 ENSG00000125652 CDS Human protein_coding chr19:6374323 chr19:6374343 nonsynonymous SNV 0.997 4 41 hm5C_associated_SNPs_22923 0 0 1 0 1 Ribosome 1 0.50023164392108 1 0.99953671215784 hm5C_site_23805 DeepMRMD:1;iRNA_m5C:0.99953671215784 23806 chr18 56063406 56063406 1 + C T GBM 56063414 + 56063394 56063434 41 TGCAGCTTTAATCGCCTTGACTTACCTCCATATGAAACCTT TGCAGCTTTAATTGCCTTGACTTACCTCCATATGAAACCTT < 41bp 1 0.0389363488262936 1 0.064290463924408 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:56063414 chr18:56063406 nonsynonymous SNV 0.999 4 13 hm5C_associated_SNPs_22924 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23806 DeepMRMD:1;iRNA_m5C:0.999536712157815 23807 chr12 121858093 121858093 1 + G A GBM 121858092 + 121858072 121858112 41 ACAGAAGATGATGATGACGACGATGATGAGGATGATGATGA ACAGAAGATGATGATGACGACAATGATGAGGATGATGATGA < 41bp 1 0.30754225910848 1 0.172055512666702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RNF34 ENSG00000170633 CDS Human protein_coding chr12:121858092 chr12:121858093 nonsynonymous SNV 0.044 0 22 hm5C_associated_SNPs_22925 0 0 1 0 2 chromatin 1 0.500231752184379 1 0.999536495631241 hm5C_site_23807 DeepMRMD:1;iRNA_m5C:0.999536495631241 23808 chr19 810782 810782 1 + G A GBM 810787 + 810767 810807 41 AACCACGACCTCGGGGAGAACCACCACCTGCGGGTCTCCTT AACCACGACCTCGGGAAGAACCACCACCTGCGGGTCTCCTT < 41bp 1 0.151729629602782 1 0.188664972782135 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:810787 chr19:810782 nonsynonymous SNV 0.997 1 16 hm5C_associated_SNPs_22926 0 0 1 0 1 Cytosol 1 0.500231643940471 1 0.999536712119058 hm5C_site_23808 DeepMRMD:1;iRNA_m5C:0.999536712119058 23809 chr7 116339986 116339986 1 + C A GBM 116339981 + 116339961 116340001 41 CACACAAGAATAATCAGGTTCTGTTCCATAAACTCTGGATT CACACAAGAATAATCAGGTTCTGTTACATAAACTCTGGATT < 41bp 1 0.170495796847443 1 0.054120808839798 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MET ENSG00000105976 CDS Human protein_coding chr7:116339981 chr7:116339986 nonsynonymous SNV 0.956 4 26 hm5C_associated_SNPs_22927 0 0 1 0 0 Cytosol 1 0.500229678555528 1 0.999540642888944 hm5C_site_23809 DeepMRMD:1;iRNA_m5C:0.999540642888944 23810 chr9 38396493 38396493 1 + G A GBM 38396501 + 38396481 38396521 41 GGTGCGGCCATCGCCCAGCACGTGGATGTTGACAAAGTTGC GGTGCGGCCATCACCCAGCACGTGGATGTTGACAAAGTTGC < 41bp 1 0.427059265337595 1 0.368579804897308 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALDH1B1 ENSG00000137124 CDS Human protein_coding chr9:38396501 chr9:38396493 nonsynonymous SNV 0.013 1 13 hm5C_associated_SNPs_22928 0 0 0 0 0 Cytosol 1 0.500231829903343 1 0.999536340193314 hm5C_site_23810 DeepMRMD:1;iRNA_m5C:0.999536340193314 23811 chr17 64783079 64783079 1 + C A GBM 64783073 + 64783053 64783093 41 AAAATCCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG AAAATCCTTGTCCAAGGAGGCTGTTTATGTCTGCAAAGGAG < 41bp 1 0.0468105131578975 1 0.259233474731445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64783073 chr17:64783079 nonsynonymous SNV 0.970 2 27 hm5C_associated_SNPs_22929 0 0 1 0 2 Ribosome 1 0.500231643925248 1 0.999536712149504 hm5C_site_23811 DeepMRMD:1;iRNA_m5C:0.999536712149504 23812 chr6 33380542 33380542 1 + G A GBM 33380523 + 33380503 33380543 41 TTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGGC TTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGAC < 41bp 1 0.433201720632094 1 0.135435968637466 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380523 chr6:33380542 synonymous SNV . 0 40 hm5C_associated_SNPs_22930 0 0 1 2 2 Cytosol 1 0.500231565302044 1 0.999536869395913 hm5C_site_23812 DeepMRMD:1;iRNA_m5C:0.999536869395913 23813 chr7 135258552 135258552 1 + G A GBM 135258571 + 135258551 135258591 41 AGCTGTTGAGCTTCTTCTTGCTGGTAGGTTGACATTTAACT AACTGTTGAGCTTCTTCTTGCTGGTAGGTTGACATTTAACT < 41bp 1 0.212807849487171 1 0.118764460086823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135258571 chr7:135258552 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_22931 0 0 1 2 1 Cytosol 1 0.500374731024996 1 0.999250537950007 hm5C_site_23813 DeepMRMD:1;iRNA_m5C:0.999250537950007 23814 chr3 141644464 141644464 1 + G T GBM 141644475 + 141644455 141644495 41 AGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT AGATTGATGTATCAGCCAACCTAAAAAGTCAGGATGATCGT < 41bp 1 0.695922907730122 1 0.416225969791412 experiment 0.608154184539756 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644475 chr3:141644464 nonsynonymous SNV 0.385 4 10 hm5C_associated_SNPs_22932 0 0 1 0 1 Ribosome 1 0.500231709972376 1 0.999536580055249 hm5C_site_23814 DeepMRMD:1;iRNA_m5C:0.999536580055249 23815 chr1 92769550 92769550 1 + C A GBM 92769553 + 92769533 92769573 41 GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCGTGG GGGGAGGTTCATTACACATGCTCACTACAGTGATGTCGTGG < 41bp 1 0.256567730941705 1 0.0762902796268463 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92769553 chr1:92769550 nonsynonymous SNV 0.996 3 18 hm5C_associated_SNPs_22933 0 0 1 1 2 Cytosol 1 0.500231644115697 1 0.999536711768606 hm5C_site_23815 DeepMRMD:1;iRNA_m5C:0.999536711768606 23816 chr9 95869974 95869974 1 + G A GBM 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CCACCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC < 41bp 1 0.0559258095612369 1 0.0723204910755157 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95869974 nonsynonymous SNV 0.998 4 3 hm5C_associated_SNPs_22934 0 0 1 0 1 Ribosome 1 0.500232455992457 1 0.999535088015086 hm5C_site_23816 DeepMRMD:1;iRNA_m5C:0.999535088015086 23817 chr16 67914549 67914549 1 + C T GBM 67914550 + 67914530 67914570 41 CCCCTAGCCGCACTCGTTCCCCTGATGTCATCTCCTCAGCT CCCCTAGCCGCACTCGTTCTCCTGATGTCATCTCCTCAGCT < 41bp 1 0.512467955372668 1 0.471185833215714 experiment 0.975064089254664 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914550 chr16:67914549 synonymous SNV . 0 20 hm5C_associated_SNPs_22935 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23817 DeepMRMD:1;iRNA_m5C:0.999536712157815 23818 chr22 22025308 22025308 1 + T C GBM 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCCACCCAGTCTGCACTCCCGATGGCATCGT < 41bp 1 0.558109116833226 1 0.467713981866837 experiment 0.883781766333547 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025308 nonsynonymous SNV 0.975 1 13 hm5C_associated_SNPs_22937 0 0 1 0 2 Cytosol 1 0.500240179403665 1 0.999519641192669 hm5C_site_23818 DeepMRMD:1;iRNA_m5C:0.999519641192669 23819 chr6 138727171 138727171 1 + G T GBM 138727165 + 138727145 138727185 41 CGTGGAGCCTGGTTCAGGTCCTTTTAGTGAGTCTACCATTA CGTGGAGCCTGGTTCAGGTCCTTTTATTGAGTCTACCATTA < 41bp 1 0.100758633584619 1 0.019841730594635 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HEBP2;HEBP2 ENSG00000051620;ENSG00000051620 exonic;splicing Human other chr6:138727165 chr6:138727171 nonsynonymous SNV 0.999 3 27 hm5C_associated_SNPs_22938 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23819 DeepMRMD:1;iRNA_m5C:0.999536712157815 23820 chr6 1391312 1391312 1 + A G GBM 1391304 + 1391284 1391324 41 CACTCCAGCATGTCCTCCTACTCGCTGGAGCAGAGCTACTT CACTCCAGCATGTCCTCCTACTCGCTGGGGCAGAGCTACTT < 41bp 1 0.467599667152339 1 0.242214858531952 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1391304 chr6:1391312 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_22939 0 0 1 0 1 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_23820 DeepMRMD:1;iRNA_m5C:0.999536712157814 23821 chr11 118403822 118403822 1 + C T GBM 118403838 + 118403818 118403858 41 TCACCAACCACACGGTGCAGCTGCAGCTCCGCAGCCTGGCA TCACTAACCACACGGTGCAGCTGCAGCTCCGCAGCCTGGCA < 41bp 1 0.697616384842467 1 0.82080066204071 experiment 0.604767230315067 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118403838 chr11:118403822 synonymous SNV . 0 5 hm5C_associated_SNPs_22940 0 0 1 0 0 Nucleus 1 0.500231719184009 0.35839867591858 0.999536561631981 hm5C_site_23821 DeepMRMD:0.35839867591858;iRNA_m5C:0.999536561631981 23822 chr3 148562321 148562321 1 + C A GBM 148562304 + 148562284 148562324 41 GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTT GTGAGATCCAAGTGACAGAGCTTCTCGACAAGTTAGAATTT < 41bp 1 0.0925319866321057 1 0.0845984518527985 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562304 chr3:148562321 nonsynonymous SNV 0.983 1 38 hm5C_associated_SNPs_22941 0 0 0 0 2 exosome 1 0.50023164392117 1 0.999536712157659 hm5C_site_23822 DeepMRMD:1;iRNA_m5C:0.999536712157659 23823 chr3 148562321 148562321 1 + C A GBM 148562307 + 148562287 148562327 41 AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTAT AGATCCAAGTGACAGAGCTTCTCGACAAGTTAGAATTTTAT < 41bp 1 0.599174906458144 1 0.73429262638092 experiment 0.801650187083712 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562307 chr3:148562321 nonsynonymous SNV 0.983 1 35 hm5C_associated_SNPs_22942 0 0 0 0 2 exosome 1 0.500231641030189 0.53141474723816 0.999536717939622 hm5C_site_23823 DeepMRMD:0.53141474723816;iRNA_m5C:0.999536717939622 23824 chr3 148562321 148562321 1 + C A GBM 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTCGACAAGTTAGAATTTTATGTCCT < 41bp 1 0.434961145528031 1 0.103492707014084 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562321 nonsynonymous SNV 0.983 1 30 hm5C_associated_SNPs_22944 0 0 0 0 2 exosome 1 0.500231660254222 1 0.999536679491556 hm5C_site_23824 DeepMRMD:1;iRNA_m5C:0.999536679491556 23825 chr3 148562321 148562321 1 + C A GBM 148562330 + 148562310 148562350 41 GACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA GACAAGTTAGAATTTTATGTCCTGCCTGTGCTCAATATTGA < 41bp 1 0.0739136962273508 1 0.0505400002002716 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562330 chr3:148562321 nonsynonymous SNV 0.983 1 12 hm5C_associated_SNPs_22945 0 0 0 0 2 exosome 1 0.500231642435733 1 0.999536715128535 hm5C_site_23825 DeepMRMD:1;iRNA_m5C:0.999536715128535 23826 chr3 148562321 148562321 1 + C A GBM 148562331 + 148562311 148562351 41 ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAT ACAAGTTAGAATTTTATGTCCTGCCTGTGCTCAATATTGAT < 41bp 1 0.228068401868842 1 0.0822024941444397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562331 chr3:148562321 nonsynonymous SNV 0.983 1 11 hm5C_associated_SNPs_22946 0 0 0 0 2 exosome 1 0.500230652012552 1 0.999538695974896 hm5C_site_23826 DeepMRMD:1;iRNA_m5C:0.999538695974896 23827 chr3 148562321 148562321 1 + C A GBM 148562334 + 148562314 148562354 41 AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGC AGTTAGAATTTTATGTCCTGCCTGTGCTCAATATTGATGGC < 41bp 1 0.129793539307416 1 0.0370416045188904 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562334 chr3:148562321 nonsynonymous SNV 0.983 1 8 hm5C_associated_SNPs_22947 0 0 0 0 2 exosome 1 0.500231724632644 1 0.999536550734713 hm5C_site_23827 DeepMRMD:1;iRNA_m5C:0.999536550734713 23828 chr3 148562321 148562321 1 + C A GBM 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGAATTTTATGTCCTGCCTGTGCTCAATATTGATGGCT < 41bp 1 0.432665100378774 1 0.213112771511078 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562321 nonsynonymous SNV 0.983 1 7 hm5C_associated_SNPs_22948 0 0 0 0 2 exosome 1 0.500231647804775 1 0.999536704390451 hm5C_site_23828 DeepMRMD:1;iRNA_m5C:0.999536704390451 23829 chr5 170883763 170883763 1 + C T GBM 170883778 + 170883758 170883798 41 CACGACGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACAC CACGATGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACAC < 41bp 1 0.386594193963771 1 0.176342457532883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGF18 ENSG00000156427 CDS Human protein_coding chr5:170883778 chr5:170883763 nonsynonymous SNV 0.996 3 6 hm5C_associated_SNPs_22950 0 0 0 0 0 nucleolus 1 0.500231652232496 1 0.999536695535009 hm5C_site_23829 DeepMRMD:1;iRNA_m5C:0.999536695535009 23830 chr5 170883763 170883763 1 + C T GBM 170883780 + 170883760 170883800 41 CGACGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACACAC CGATGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACACAC < 41bp 1 0.559307010077311 1 0.365756511688232 experiment 0.881385979845378 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGF18 ENSG00000156427 CDS Human protein_coding chr5:170883780 chr5:170883763 nonsynonymous SNV 0.996 3 4 hm5C_associated_SNPs_22951 0 0 0 0 0 nucleolus 1 0.500233747383032 1 0.999532505233936 hm5C_site_23830 DeepMRMD:1;iRNA_m5C:0.999532505233936 23831 chr16 3339555 3339555 1 + A G GBM 3339545 + 3339525 3339565 41 GGTCGCAAGGGGATTGGGCGCCTCCCCCAGAGGGTGGAATG GGTCGCAAGGGGATTGGGCGCCTCCCCCAGGGGGTGGAATG < 41bp 1 0.0691833596287026 1 0.0623712837696075 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3339545 chr16:3339555 nonsynonymous SNV 0.279 0 31 hm5C_associated_SNPs_22952 0 0 1 0 0 Cytosol 1 0.500231643916517 1 0.999536712166967 hm5C_site_23831 DeepMRMD:1;iRNA_m5C:0.999536712166967 23832 chr16 3339555 3339555 1 + A G GBM 3339549 + 3339529 3339569 41 GCAAGGGGATTGGGCGCCTCCCCCAGAGGGTGGAATGGAGC GCAAGGGGATTGGGCGCCTCCCCCAGGGGGTGGAATGGAGC < 41bp 1 0.58930301999452 1 0.665409207344055 experiment 0.82139396001096 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3339549 chr16:3339555 nonsynonymous SNV 0.279 0 27 hm5C_associated_SNPs_22953 0 0 1 0 0 Cytosol 1 0.500231827592448 0.66918158531189 0.999536344815103 hm5C_site_23832 DeepMRMD:0.66918158531189;iRNA_m5C:0.999536344815103 23833 chr11 70181755 70181755 1 + G A GBM 70181768 + 70181748 70181788 41 ATGAGAGGCTTCAACTTCATCTTAAAGAGAGAATGGCTGCT ATGAGAGACTTCAACTTCATCTTAAAGAGAGAATGGCTGCT < 41bp 1 0.224700802367916 1 0.245926976203918 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70181768 chr11:70181755 synonymous SNV . 0 8 hm5C_associated_SNPs_22954 0 0 1 1 2 Ribosome 1 0.50023165495126 1 0.99953669009748 hm5C_site_23833 DeepMRMD:1;iRNA_m5C:0.99953669009748 23834 chr11 43411222 43411222 1 + A C GBM 43411217 + 43411197 43411237 41 AACAGAAACAATTAGTTGCTCAAAAAATTCACATAGAAGAG AACAGAAACAATTAGTTGCTCAAAACATTCACATAGAAGAG < 41bp 1 0.377889945856441 1 0.30573707818985 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC17 ENSG00000052841 CDS Human protein_coding chr11:43411217 chr11:43411222 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_22955 0 0 1 0 1 Nucleus 1 0.500237538029628 1 0.999524923940743 hm5C_site_23834 DeepMRMD:1;iRNA_m5C:0.999524923940743 23835 chr1 109804157 109804157 1 + G A GBM 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGCCACAAAGGAGCGCGACAGGTTGCTGTTGTACAATGG < 41bp 1 0.218489901636067 1 0.14321756362915 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804157 nonsynonymous SNV 0.870 4 22 hm5C_associated_SNPs_22956 0 0 1 0 2 Endoplasmic reticulum 1 0.500231635624662 1 0.999536728750676 hm5C_site_23835 DeepMRMD:1;iRNA_m5C:0.999536728750676 23836 chr19 4409752 4409752 1 + G A GBM 4409753 + 4409733 4409773 41 CCCACCTCCACGCCCCTCCGCAGAGTGAGTATCTCCCATGG CCCACCTCCACGCCCCTCCACAGAGTGAGTATCTCCCATGG < 41bp 1 0.549205625985581 1 0.576551914215088 experiment 0.901588748028838 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4409753 chr19:4409752 nonsynonymous SNV 0.223 0 20 hm5C_associated_SNPs_22957 0 0 1 0 0 Nucleus 1 0.500231643919491 0.846896171569824 0.999536712161017 hm5C_site_23836 DeepMRMD:0.846896171569824;iRNA_m5C:0.999536712161017 23837 chr6 168363191 168363191 1 + G C GBM 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAACAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.260764257099303 1 0.548432230949402 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363191 nonsynonymous SNV 0.101 4 10 hm5C_associated_SNPs_22958 0 0 1 0 3 unknown 1 0.500231643921093 0.903135538101196 0.999536712157815 hm5C_site_23837 DeepMRMD:0.903135538101196;iRNA_m5C:0.999536712157815 23838 chr1 22333423 22333423 1 + G A GBM 22333404 + 22333384 22333424 41 CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCAT < 41bp 1 0.288563658018518 1 0.159157246351242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333404 chr1:22333423 nonsynonymous SNV 0.243 3 40 hm5C_associated_SNPs_22959 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164396262 1 0.99953671207476 hm5C_site_23838 DeepMRMD:1;iRNA_m5C:0.99953671207476 23839 chr1 22333423 22333423 1 + G A GBM 22333406 + 22333386 22333426 41 CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCATCC < 41bp 1 0.33787923856757 1 0.0488027036190033 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333406 chr1:22333423 nonsynonymous SNV 0.243 3 38 hm5C_associated_SNPs_22960 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164396238 1 0.99953671207524 hm5C_site_23839 DeepMRMD:1;iRNA_m5C:0.99953671207524 23840 chr1 22333423 22333423 1 + G A GBM 22333407 + 22333387 22333427 41 ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCA ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCATCCA < 41bp 1 0.243245868070818 1 0.152420431375504 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333407 chr1:22333423 nonsynonymous SNV 0.243 3 37 hm5C_associated_SNPs_22961 0 0 0 0 2 Endoplasmic reticulum 1 0.500230634207203 1 0.999538731585595 hm5C_site_23840 DeepMRMD:1;iRNA_m5C:0.999538731585595 23841 chr1 22333423 22333423 1 + G A GBM 22333408 + 22333388 22333428 41 TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCAG TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCATCCAG < 41bp 1 0.668937372830471 1 0.389288663864136 experiment 0.662125254339058 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333408 chr1:22333423 nonsynonymous SNV 0.243 3 36 hm5C_associated_SNPs_22962 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392116 1 0.999536712157679 hm5C_site_23841 DeepMRMD:1;iRNA_m5C:0.999536712157679 23842 chr1 22333423 22333423 1 + G A GBM 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCATCCAGCTCGCCTCACTCC < 41bp 1 0.0612798570626656 1 0.0258382856845856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333423 nonsynonymous SNV 0.243 3 23 hm5C_associated_SNPs_22963 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921037 1 0.999536712157927 hm5C_site_23842 DeepMRMD:1;iRNA_m5C:0.999536712157927 23843 chr1 22333423 22333423 1 + G A GBM 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCATCCAGCTCGCCTCACTCCC < 41bp 1 0.291317184198637 1 0.162711173295975 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333423 nonsynonymous SNV 0.243 3 22 hm5C_associated_SNPs_22964 0 0 0 0 2 Endoplasmic reticulum 1 0.500231577924209 1 0.999536844151582 hm5C_site_23843 DeepMRMD:1;iRNA_m5C:0.999536844151582 23844 chr1 22333423 22333423 1 + G A GBM 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCATCCAGCTCGCCTCACTCCCTCC < 41bp 1 0.463482490550631 1 0.864352941513062 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333423 nonsynonymous SNV 0.243 3 19 hm5C_associated_SNPs_22965 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.271294116973876 0.999536712157815 hm5C_site_23844 DeepMRMD:0.271294116973876;iRNA_m5C:0.999536712157815 23845 chr1 22333423 22333423 1 + G A GBM 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCATCCAGCTCGCCTCACTCCCTCCC < 41bp 1 0.647780830505257 1 0.739835858345032 experiment 0.704438338989486 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333423 nonsynonymous SNV 0.243 3 18 hm5C_associated_SNPs_22966 0 0 0 0 2 Endoplasmic reticulum 1 0.50023177663838 0.520328283309936 0.999536446723239 hm5C_site_23845 DeepMRMD:0.520328283309936;iRNA_m5C:0.999536446723239 23846 chr1 22333423 22333423 1 + G A GBM 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCATCCAGCTCGCCTCACTCCCTCCCGCT < 41bp 1 0.629388699387016 1 0.328613996505737 experiment 0.741222601225968 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333423 nonsynonymous SNV 0.243 3 15 hm5C_associated_SNPs_22967 0 0 0 0 2 Endoplasmic reticulum 1 0.500231527146423 1 0.999536945707153 hm5C_site_23846 DeepMRMD:1;iRNA_m5C:0.999536945707153 23847 chr1 22333423 22333423 1 + G A GBM 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGG < 41bp 1 0.641500846041797 1 0.515120983123779 experiment 0.716998307916406 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333423 nonsynonymous SNV 0.243 3 13 hm5C_associated_SNPs_22968 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.969758033752442 0.999536712157815 hm5C_site_23847 DeepMRMD:0.969758033752442;iRNA_m5C:0.999536712157815 23848 chr1 22333423 22333423 1 + G A GBM 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTG < 41bp 1 0.245173987745755 1 0.143548429012299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333423 nonsynonymous SNV 0.243 3 11 hm5C_associated_SNPs_22969 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23848 DeepMRMD:1;iRNA_m5C:0.999536712157815 23849 chr1 22333423 22333423 1 + G A GBM 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.175805167287364 1 0.178592652082443 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333423 nonsynonymous SNV 0.243 3 10 hm5C_associated_SNPs_22970 0 0 0 0 2 Endoplasmic reticulum 1 0.500247334672056 1 0.999505330655888 hm5C_site_23849 DeepMRMD:1;iRNA_m5C:0.999505330655888 23850 chr1 22333423 22333423 1 + G A GBM 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.106685761096618 1 0.162424147129059 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333423 nonsynonymous SNV 0.243 3 8 hm5C_associated_SNPs_22971 0 0 0 0 2 Endoplasmic reticulum 1 0.500234040960913 1 0.999531918078174 hm5C_site_23850 DeepMRMD:1;iRNA_m5C:0.999531918078174 23851 chr1 22333423 22333423 1 + G A GBM 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.344793475681887 1 0.0807304978370667 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333423 nonsynonymous SNV 0.243 3 6 hm5C_associated_SNPs_22972 0 0 0 0 2 Endoplasmic reticulum 1 0.500230595736869 1 0.999538808526263 hm5C_site_23851 DeepMRMD:1;iRNA_m5C:0.999538808526263 23852 chr1 22333423 22333423 1 + G A GBM 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0981137804512978 1 0.104019165039062 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333423 nonsynonymous SNV 0.243 3 4 hm5C_associated_SNPs_22973 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643917964 1 0.999536712164071 hm5C_site_23852 DeepMRMD:1;iRNA_m5C:0.999536712164071 23853 chr1 22333423 22333423 1 + G A GBM 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT < 41bp 1 0.0548121309359509 1 0.0468075573444366 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333423 nonsynonymous SNV 0.243 3 3 hm5C_associated_SNPs_22974 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643909211 1 0.999536712181578 hm5C_site_23853 DeepMRMD:1;iRNA_m5C:0.999536712181578 23854 chr1 22333423 22333423 1 + G A GBM 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CATCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC < 41bp 1 0.39589652194216 1 0.319704592227936 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333423 nonsynonymous SNV 0.243 3 2 hm5C_associated_SNPs_22975 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920625 1 0.999536712158751 hm5C_site_23854 DeepMRMD:1;iRNA_m5C:0.999536712158751 23855 chr6 150290460 150290460 1 + T G GBM 150290478 + 150290458 150290498 41 AATTTTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT AAGTTTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT < 41bp 1 0.215228722947102 1 0.32590651512146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290478 chr6:150290460 nonsynonymous SNV 0.001 2 3 hm5C_associated_SNPs_22976 0 0 0 0 1 Nucleus 1 0.500228948240391 1 0.999542103519217 hm5C_site_23855 DeepMRMD:1;iRNA_m5C:0.999542103519217 23856 chr1 26883501 26883501 1 + C T GBM 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATACCGTTGTGAGATCAAGCCACCCTTCAAGCCAGC < 41bp 1 0.245508602393854 1 0.687900722026825 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883501 nonsynonymous SNV 0.992 4 13 hm5C_associated_SNPs_22977 0 0 1 0 1 Ribosome 1 0.500231438478325 0.62419855594635 0.99953712304335 hm5C_site_23856 DeepMRMD:0.62419855594635;iRNA_m5C:0.99953712304335 23857 chr6 87865454 87865454 1 + G T GBM 87865437 + 87865417 87865457 41 GCGGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACCGACT GCGGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACCTACT < 41bp 1 0.435734975773683 1 0.312638431787491 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF292 ENSG00000188994 CDS Human protein_coding chr6:87865437 chr6:87865454 nonsynonymous SNV 0.879 1 38 hm5C_associated_SNPs_22978 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23857 DeepMRMD:1;iRNA_m5C:0.999536712157815 23858 chr5 5464633 5464633 1 + G T GBM 5464638 + 5464618 5464658 41 CACTTCCTGTGCCTGGCCGACTCCCACCCTGTGCATCTGGC CACTTCCTGTGCCTGTCCGACTCCCACCCTGTGCATCTGGC < 41bp 1 0.132646508610496 1 0.311923563480377 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ICE1 ENSG00000164151 CDS Human protein_coding chr5:5464638 chr5:5464633 nonsynonymous SNV 0.914 3 16 hm5C_associated_SNPs_22979 0 0 1 0 0 Nucleus 1 0.500231643921081 1 0.999536712157838 hm5C_site_23858 DeepMRMD:1;iRNA_m5C:0.999536712157838 23859 chr19 49686170 49686170 1 + C T GBM 49686179 + 49686159 49686199 41 GGCCAGGGCTTCGGGGAGAGCGTAAGGACCGGGCAAAGCTG GGCCAGGGCTTTGGGGAGAGCGTAAGGACCGGGCAAAGCTG < 41bp 1 0.679207747765125 1 0.535246908664703 experiment 0.641584504469749 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49686179 chr19:49686170 synonymous SNV . 0 12 hm5C_associated_SNPs_22980 0 0 1 0 0 chromatin 1 0.500231643921092 0.929506182670594 0.999536712157815 hm5C_site_23859 DeepMRMD:0.929506182670594;iRNA_m5C:0.999536712157815 23860 chrX 96212894 96212894 1 + G T GBM 96212876 + 96212856 96212896 41 TCCAGGTCCTCCTGCAGCACCTCCATTGCCAGGTGTAGGGC TCCAGGTCCTCCTGCAGCACCTCCATTGCCAGGTGTAGTGC < 41bp 1 0.698094662670068 1 0.882717132568359 experiment 0.603810674659864 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DIAPH2 ENSG00000147202 CDS Human protein_coding chrX:96212876 chrX:96212894 nonsynonymous SNV 0.013 0 39 hm5C_associated_SNPs_22981 0 0 0 0 1 cytosol 1 0.500231639531932 0.234565734863282 0.999536720936136 hm5C_site_23860 DeepMRMD:0.234565734863282;iRNA_m5C:0.999536720936136 23861 chr16 89759824 89759824 1 + G A GBM 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCGGCCTGGCCCAGGCCTATGGTGTCCCAGTA < 41bp 1 0.575585648681713 1 0.817821741104126 experiment 0.848828702636573 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759824 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_22982 0 0 1 0 2 chromatin 1 0.500231643921092 0.364356517791748 0.999536712157815 hm5C_site_23861 DeepMRMD:0.364356517791748;iRNA_m5C:0.999536712157815 23862 chr5 176519769 176519769 1 + G A GBM 176519758 + 176519738 176519778 41 ATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG ATTCCATCGGCCTCTCCTACCAGTCTGCCTGACTCACGGTG < 41bp 1 0.307253895566494 1 0.195961594581604 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519758 chr5:176519769 stopgain 0.998 1 32 hm5C_associated_SNPs_22983 0 0 1 0 1 Endoplasmic reticulum 1 0.500231250342319 1 0.999537499315361 hm5C_site_23862 DeepMRMD:1;iRNA_m5C:0.999537499315361 23863 chr20 35862424 35862424 1 + G T GBM 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTTGATCCGGATTGGTGCCAATGTCTC < 41bp 1 0.564858621869767 1 0.523806571960449 experiment 0.870282756260465 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862424 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_22984 0 0 1 0 2 Ribosome 1 0.500231643483604 0.952386856079102 0.999536713032792 hm5C_site_23863 DeepMRMD:0.952386856079102;iRNA_m5C:0.999536713032792 23864 chr17 27000493 27000493 1 + G A GBM 27000491 + 27000471 27000511 41 GATGAAGGCGAGGTGGTACCCCGAGTCACCAAGAAATTTGT GATGAAGGCGAGGTGGTACCCCAAGTCACCAAGAAATTTGT < 41bp 1 0.305225247937907 1 0.471307277679443 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27000491 chr17:27000493 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_22985 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23864 DeepMRMD:1;iRNA_m5C:0.999536712157815 23865 chr7 100777094 100777094 1 + C T GBM 100777083 + 100777063 100777103 41 CTTATGAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATT CTTATGAAAAAGAGGTGCCTCTCTCTGCCCTTACCAACATT < 41bp 1 0.148058198999114 1 0.268760323524475 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100777083 chr7:100777094 synonymous SNV . 0 32 hm5C_associated_SNPs_22986 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_23865 DeepMRMD:1;iRNA_m5C:0.999536712157815 23866 chr7 100777094 100777094 1 + C T GBM 100777087 + 100777067 100777107 41 TGAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATTCTGA TGAAAAAGAGGTGCCTCTCTCTGCCCTTACCAACATTCTGA < 41bp 1 0.48696797394787 1 0.461164683103561 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100777087 chr7:100777094 synonymous SNV . 0 28 hm5C_associated_SNPs_22987 0 0 1 0 1 Ribosome 1 0.50023164392131 1 0.999536712157381 hm5C_site_23866 DeepMRMD:1;iRNA_m5C:0.999536712157381 23867 chr7 66489935 66489935 1 + G T GBM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGTACCATCAGAGCCTAAATTCCATT < 41bp 1 0.521108289937427 1 0.131463557481766 experiment 0.957783420125147 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489935 nonsynonymous SNV 0.087 1 18 hm5C_associated_SNPs_22988 0 0 0 0 2 Endoplasmic reticulum 1 0.500231707617555 1 0.99953658476489 hm5C_site_23867 DeepMRMD:1;iRNA_m5C:0.99953658476489 23868 chr20 60882680 60882680 1 + C T GBM 60882662 + 60882642 60882682 41 CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCCCG CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCTCG < 41bp 1 0.302726443807576 1 0.514996588230133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882662 chr20:60882680 nonsynonymous SNV 0.954 1 39 hm5C_associated_SNPs_22989 0 0 1 0 1 Ribosome 1 0.500231643921146 0.970006823539734 0.999536712157708 hm5C_site_23868 DeepMRMD:0.970006823539734;iRNA_m5C:0.999536712157708 23869 chr17 65735126 65735126 1 + G A GBM 65735123 + 65735103 65735143 41 GACATCCCAGCACAGCATATCACGGTAAGTGTTCATACAAG GACATCCCAGCACAGCATATCACAGTAAGTGTTCATACAAG < 41bp 1 0.496954772994055 1 0.288639783859253 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735123 chr17:65735126 synonymous SNV . 0 24 hm5C_associated_SNPs_22991 0 0 1 0 2 Nucleus 1 0.500231816746836 1 0.999536366506328 hm5C_site_23869 DeepMRMD:1;iRNA_m5C:0.999536366506328 23870 chr17 33328359 33328359 1 + T C GBM 33328374 + 33328354 33328394 41 TTCCCTCGCTGCACCCGAATCCGAGATGATAAGGACTGGAA TTCCCCCGCTGCACCCGAATCCGAGATGATAAGGACTGGAA < 41bp 1 0.422779306404397 1 0.667318761348724 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33328374 chr17:33328359 synonymous SNV . 0 6 hm5C_associated_SNPs_22992 0 0 0 0 2 Cytosol 1 0.500231635440857 0.665362477302552 0.999536729118285 hm5C_site_23870 DeepMRMD:0.665362477302552;iRNA_m5C:0.999536729118285 23871 chr1 22329556 22329556 1 + C T GBM 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCCATGGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCA < 41bp 1 0.267227280460079 1 0.0791512131690979 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329556 nonsynonymous SNV 0.868 1 17 hm5C_associated_SNPs_22993 0 0 0 0 2 Endoplasmic reticulum 1 0.50023163999548 1 0.99953672000904 hm5C_site_23871 DeepMRMD:1;iRNA_m5C:0.99953672000904 23872 chr1 22329556 22329556 1 + C T GBM 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCCATGGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCAG < 41bp 1 0.255058525483838 1 0.221019387245178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329556 nonsynonymous SNV 0.868 1 16 hm5C_associated_SNPs_22994 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644152183 1 0.999536711695634 hm5C_site_23872 DeepMRMD:1;iRNA_m5C:0.999536711695634 23873 chr1 22329556 22329556 1 + C T GBM 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CCATGGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCAGG < 41bp 1 0.0553917298057694 1 0.217006742954254 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329556 nonsynonymous SNV 0.868 1 15 hm5C_associated_SNPs_22995 0 0 0 0 2 Endoplasmic reticulum 1 0.500231212958791 1 0.999537574082418 hm5C_site_23873 DeepMRMD:1;iRNA_m5C:0.999537574082418 23874 chr1 22329556 22329556 1 + C T GBM 22329566 + 22329546 22329586 41 GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG GGTGAGGATGTGGTCCCCTACAGCTGGCCCTGGCAGGTAAG < 41bp 1 0.56125240472907 1 0.344043374061584 experiment 0.87749519054186 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329566 chr1:22329556 nonsynonymous SNV 0.868 1 11 hm5C_associated_SNPs_22997 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23874 DeepMRMD:1;iRNA_m5C:0.999536712157815 23875 chr1 22329556 22329556 1 + C T GBM 22329569 + 22329549 22329589 41 GAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC GAGGATGTGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC < 41bp 1 0.372003293345547 1 0.428740411996841 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329569 chr1:22329556 nonsynonymous SNV 0.868 1 8 hm5C_associated_SNPs_22998 0 0 0 0 2 Endoplasmic reticulum 1 0.500231645831109 1 0.999536708337781 hm5C_site_23875 DeepMRMD:1;iRNA_m5C:0.999536708337781 23876 chr1 22329556 22329556 1 + C T GBM 22329573 + 22329553 22329593 41 ATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATA ATGTGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATA < 41bp 1 0.0824643624588094 1 0.0231782793998718 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329573 chr1:22329556 nonsynonymous SNV 0.868 1 4 hm5C_associated_SNPs_22999 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23876 DeepMRMD:1;iRNA_m5C:0.999536712157815 23877 chr1 22329556 22329556 1 + C T GBM 22329574 + 22329554 22329594 41 TGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAG TGTGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAG < 41bp 1 0.0989985883605804 1 0.0668187439441681 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329574 chr1:22329556 nonsynonymous SNV 0.868 1 3 hm5C_associated_SNPs_23000 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921103 1 0.999536712157793 hm5C_site_23877 DeepMRMD:1;iRNA_m5C:0.999536712157793 23878 chr1 22329556 22329556 1 + C T GBM 22329575 + 22329555 22329595 41 GCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGC GTGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGC < 41bp 1 0.26400354865598 1 0.0828120410442352 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329575 chr1:22329556 nonsynonymous SNV 0.868 1 2 hm5C_associated_SNPs_23001 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_23878 DeepMRMD:1;iRNA_m5C:0.999536712157815 23879 chr18 46284644 46284644 1 + A C GBM 46284660 + 46284640 46284680 41 CCCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGT CCCCCCAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGT < 41bp 1 0.243841503258859 1 0.448640942573547 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284660 chr18:46284644 synonymous SNV . 0 5 hm5C_associated_SNPs_23002 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_23879 DeepMRMD:1;iRNA_m5C:0.999536712157816 23880 chr18 46284644 46284644 1 + A C GBM 46284661 + 46284641 46284681 41 CCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGTA CCCCCAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGTA < 41bp 1 0.348634000638849 1 0.588368654251099 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284661 chr18:46284644 synonymous SNV . 0 4 hm5C_associated_SNPs_23003 0 0 0 0 0 Cytosol 1 0.500231643921092 0.823262691497802 0.999536712157815 hm5C_site_23880 DeepMRMD:0.823262691497802;iRNA_m5C:0.999536712157815 23881 chr19 45912970 45912970 1 + A G GBM 45912980 - 45912960 45913000 41 TTCTCCCTCCCATCCAGGCCCGGAGGCTGTTTGATGTCCTG TTCTCCCTCCCATCCAGGCCCGGAGGCTGTCTGATGTCCTG < 41bp 1 0.468236828067477 1 0.449113488197327 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERCC1 ENSG00000012061 CDS Human protein_coding chr19:45912980 chr19:45912970 nonsynonymous SNV 0.984 0 31 hm5C_associated_SNPs_23004 0 0 0 0 1 Cytosol 1 0.500231643921115 1 0.99953671215777 hm5C_site_23881 DeepMRMD:1;iRNA_m5C:0.99953671215777 23882 chr1 6271141 6271141 1 + C T GBM 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCCACTGCTGCTGCTGGGGTCACGTCGGGTGGCAGCTGCTG < 41bp 1 0.460103261699067 1 0.249319285154343 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271141 nonsynonymous SNV 0.548 0 20 hm5C_associated_SNPs_23005 0 0 1 0 2 Nucleus 1 0.500231743926701 1 0.999536512146597 hm5C_site_23882 DeepMRMD:1;iRNA_m5C:0.999536512146597 23883 chr2 36764638 36764638 1 + C T GBM 36764635 + 36764615 36764655 41 CGACCGTCAGCTGCCCCCCTCTGCCCTGTGTTGAGCCCATC CGACCGTCAGCTGCCCCCCTCTGTCCTGTGTTGAGCCCATC < 41bp 1 0.156975976384732 1 0.353804349899292 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36764635 chr2:36764638 nonsynonymous SNV 0.907 3 24 hm5C_associated_SNPs_23006 0 0 0 0 1 Nucleus 1 0.50023170183541 1 0.99953659632918 hm5C_site_23883 DeepMRMD:1;iRNA_m5C:0.99953659632918 23884 chr15 69652448 69652448 1 + T C GBM 69652440 + 69652420 69652460 41 ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCA ATGCTGAGCCTGAAGCTCCCCAGGCTGTCTAGCATAGACCA < 41bp 1 0.661221604862177 1 0.781709313392639 experiment 0.677556790275645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652440 chr15:69652448 nonsynonymous SNV 0.022 1 29 hm5C_associated_SNPs_23007 0 0 0 0 1 Cytosol 1 0.500231611450481 0.436581373214722 0.999536777099039 hm5C_site_23884 DeepMRMD:0.436581373214722;iRNA_m5C:0.999536777099039 23885 chr10 128810562 128810562 1 + G A GBM 128810545 + 128810525 128810565 41 AGCCGCTGAACATGTCATCCCGTTTTTCACCCAGGGTGGCA AGCCGCTGAACATGTCATCCCGTTTTTCACCCAGGGTAGCA < 41bp 1 0.0610467783599185 1 0.01605623960495 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128810545 chr10:128810562 synonymous SNV . 0 38 hm5C_associated_SNPs_23008 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_23885 DeepMRMD:1;iRNA_m5C:0.999536712157814 23886 chr19 49376806 49376806 1 + G A GBM 49376803 + 49376783 49376823 41 TGAAAACCAGCAGTTCCCTTCCTGAAGCCTGGGGACTTTTG TGAAAACCAGCAGTTCCCTTCCTAAAGCCTGGGGACTTTTG < 41bp 1 0.0728280505240513 1 0.126502722501755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49376803 chr19:49376806 nonsynonymous SNV 0.014 0 24 hm5C_associated_SNPs_23009 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23886 DeepMRMD:1;iRNA_m5C:0.999536712157815 23887 chr1 109643103 109643103 1 + G A GBM 109643093 + 109643073 109643113 41 GGGGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCT GGGGCGCTGTGCAGCGAGGCCCCTTAGGCGACGGCCACGCT < 41bp 1 0.178087268189248 1 0.0430663824081421 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643093 chr1:109643103 . . 0 31 hm5C_associated_SNPs_23011 0 0 1 1 0 unknown 1 0.500231649172101 1 0.999536701655799 hm5C_site_23887 DeepMRMD:1;iRNA_m5C:0.999536701655799 23888 chr1 109643103 109643103 1 + G A GBM 109643095 + 109643075 109643115 41 GGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCTGT GGCGCTGTGCAGCGAGGCCCCTTAGGCGACGGCCACGCTGT < 41bp 1 0.67847627669919 1 0.147378742694855 experiment 0.643047446601619 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643095 chr1:109643103 . . 0 29 hm5C_associated_SNPs_23012 0 0 1 1 0 unknown 1 0.500231643905122 1 0.999536712189757 hm5C_site_23888 DeepMRMD:1;iRNA_m5C:0.999536712189757 23889 chr1 109643103 109643103 1 + G A GBM 109643108 + 109643088 109643128 41 GAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGAGGTC GAGGCCCCTTAGGCGACGGCCACGCTGTGGTCCCCGAGGTC < 41bp 1 0.633935089766804 1 0.49820664525032 experiment 0.732129820466392 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643108 chr1:109643103 . . 0 16 hm5C_associated_SNPs_23014 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157817 hm5C_site_23889 DeepMRMD:1;iRNA_m5C:0.999536712157817 23890 chr15 91358357 91358357 1 + T C GBM 91358341 + 91358321 91358361 41 TCACATTTCAGGGGGTCTGCCACATGTAGAAAGATATCTTC TCACATTTCAGGGGGTCTGCCACATGTAGAAAGATACCTTC < 41bp 1 0.453067808328448 1 0.503970682621002 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91358341 chr15:91358357 nonsynonymous SNV 0.004 0 37 hm5C_associated_SNPs_23016 1 0 1 0 1 Ribosome 1 0.50023164392176 0.992058634757996 0.999536712156479 hm5C_site_23890 DeepMRMD:0.992058634757996;iRNA_m5C:0.999536712156479 not specified not specified 23891 chr15 91358357 91358357 1 + T C GBM 91358367 + 91358347 91358387 41 TAGAAAGATATCTTCCAAAACGAAATCCTCCAGCATCATTG TAGAAAGATACCTTCCAAAACGAAATCCTCCAGCATCATTG < 41bp 1 0.648378838851225 1 0.0550813674926758 experiment 0.70324232229755 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91358367 chr15:91358357 nonsynonymous SNV 0.004 0 11 hm5C_associated_SNPs_23017 1 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23891 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 23892 chr2 219677652 219677652 1 + A C GBM 219677655 + 219677635 219677675 41 TTGCTTTCACAGGGAAGAAGCTGATTGATGAGAAGCTCGAA TTGCTTTCACAGGGAAGCAGCTGATTGATGAGAAGCTCGAA < 41bp 1 0.214400811550647 1 0.104777783155441 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677655 chr2:219677652 nonsynonymous SNV 0.996 0 18 hm5C_associated_SNPs_23018 0 0 1 0 1 cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_23892 DeepMRMD:1;iRNA_m5C:0.999536712157814 23893 chr21 47754556 47754556 1 + G C GBM 47754537 + 47754517 47754557 41 GTTCACAGTCAGTGACCACCCACCAGAACAGCGTGGGATGT GTTCACAGTCAGTGACCACCCACCAGAACAGCGTGGGATCT < 41bp 1 0.644877606259175 1 0.426728904247284 experiment 0.710244787481649 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47754537 chr21:47754556 nonsynonymous SNV 0.000 0 40 hm5C_associated_SNPs_23019 1 0 1 0 0 Exosome 1 0.500231644005193 1 0.999536711989614 hm5C_site_23893 DeepMRMD:1;iRNA_m5C:0.999536711989614 Microcephalic Osteodysplastic Primordial Dwarfism Microcephalic Osteodysplastic Primordial Dwarfism 23894 chr21 47754536 47754536 1 + C A GBM 47754537 + 47754517 47754557 41 GTTCACAGTCAGTGACCACCCACCAGAACAGCGTGGGATGT GTTCACAGTCAGTGACCACACACCAGAACAGCGTGGGATGT < 41bp 1 0.670383244913369 1 0.240341126918793 experiment 0.659233510173262 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47754537 chr21:47754536 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_23020 0 0 0 0 0 Exosome 1 0.500376571336174 1 0.999246857327653 hm5C_site_23894 DeepMRMD:1;iRNA_m5C:0.999246857327653 23895 chr1 154313341 154313341 1 + T C GBM 154313339 + 154313319 154313359 41 CCCCTGTGCAGTGTGGAGGTCATCCGTCTGGGCCACAGCTA CCCCTGTGCAGTGTGGAGGTCACCCGTCTGGGCCACAGCTA < 41bp 1 0.359444346961648 1 0.0742284655570984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154313339 chr1:154313341 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_23021 0 0 1 0 0 chromatin 1 0.500240937929036 1 0.999518124141927 hm5C_site_23895 DeepMRMD:1;iRNA_m5C:0.999518124141927 23896 chr1 154313341 154313341 1 + T C GBM 154313342 + 154313322 154313362 41 CTGTGCAGTGTGGAGGTCATCCGTCTGGGCCACAGCTACTT CTGTGCAGTGTGGAGGTCACCCGTCTGGGCCACAGCTACTT < 41bp 1 0.152161743012834 1 0.0345670282840729 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154313342 chr1:154313341 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_23022 0 0 1 0 0 chromatin 1 0.500231644079959 1 0.999536711840082 hm5C_site_23896 DeepMRMD:1;iRNA_m5C:0.999536711840082 23897 chr1 120285535 120285535 1 + C G GBM 120285545 + 120285525 120285565 41 GGGCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGGCTCA GGGCTTGGTCGAAGGCACTACGCCTGTACTGCAGGGGCTCA < 41bp 1 0.589470526645142 1 0.128691583871841 experiment 0.821058946709717 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120285545 chr1:120285535 nonsynonymous SNV 0.236 1 11 hm5C_associated_SNPs_23023 0 0 1 0 0 Ribosome 1 0.500231643923945 1 0.999536712152109 hm5C_site_23897 DeepMRMD:1;iRNA_m5C:0.999536712152109 23898 chr1 120285535 120285535 1 + C G GBM 120285547 + 120285527 120285567 41 GCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGGCTCAAT GCTTGGTCGAAGGCACTACGCCTGTACTGCAGGGGCTCAAT < 41bp 1 0.289777519555123 1 0.0249567329883575 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120285547 chr1:120285535 nonsynonymous SNV 0.236 1 9 hm5C_associated_SNPs_23024 0 0 1 0 0 Ribosome 1 0.500231643866507 1 0.999536712266986 hm5C_site_23898 DeepMRMD:1;iRNA_m5C:0.999536712266986 23899 chr3 9976243 9976243 1 + C A GBM 9976249 + 9976229 9976269 41 AGTCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGC AGTCTTCTCCCCCGACTCAGCCCCATCCGTGTCATACCTGC < 41bp 1 0.510392679486097 1 0.149735063314438 experiment 0.979214641027806 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976249 chr3:9976243 nonsynonymous SNV 0.055 0 15 hm5C_associated_SNPs_23025 0 0 1 0 1 chromatin 1 0.500239069313294 1 0.999521861373411 hm5C_site_23899 DeepMRMD:1;iRNA_m5C:0.999521861373411 23900 chr3 9976243 9976243 1 + C A GBM 9976251 + 9976231 9976271 41 TCTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCG TCTTCTCCCCCGACTCAGCCCCATCCGTGTCATACCTGCCG < 41bp 1 0.0316432458421591 1 0.0389211773872375 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976251 chr3:9976243 nonsynonymous SNV 0.055 0 13 hm5C_associated_SNPs_23026 0 0 1 0 1 chromatin 1 0.50023198366942 1 0.99953603266116 hm5C_site_23900 DeepMRMD:1;iRNA_m5C:0.99953603266116 23901 chr3 9976243 9976243 1 + C A GBM 9976252 + 9976232 9976272 41 CTTCTCCCCCGCCTCAGCCCCATCCGTGTCATACCTGCCGG CTTCTCCCCCGACTCAGCCCCATCCGTGTCATACCTGCCGG < 41bp 1 0.177158875633906 1 0.236741662025452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976252 chr3:9976243 nonsynonymous SNV 0.055 0 12 hm5C_associated_SNPs_23027 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_23901 DeepMRMD:1;iRNA_m5C:0.999536712157815 23902 chr20 55968365 55968365 1 + C G GBM 55968352 + 55968332 55968372 41 TAGGCTTTGCCATTGGGGTGCAGCAGCTGCACCCCACCTTG TAGGCTTTGCCATTGGGGTGCAGCAGCTGCACCGCACCTTG < 41bp 1 0.452228377159081 1 0.348135381937027 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968352 chr20:55968365 nonsynonymous SNV 0.982 4 34 hm5C_associated_SNPs_23028 0 0 1 0 2 Ribosome 1 0.50023164396331 1 0.99953671207338 hm5C_site_23902 DeepMRMD:1;iRNA_m5C:0.99953671207338 23903 chr20 55968365 55968365 1 + C G GBM 55968361 + 55968341 55968381 41 CCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGG CCATTGGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGG < 41bp 1 0.27797974174315 1 0.263059079647064 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968361 chr20:55968365 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_23029 0 0 1 0 2 Ribosome 1 0.500231643930884 1 0.999536712138232 hm5C_site_23903 DeepMRMD:1;iRNA_m5C:0.999536712138232 23904 chr20 55968365 55968365 1 + C G GBM 55968363 + 55968343 55968383 41 ATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGAC ATTGGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGGAC < 41bp 1 0.423018584085818 1 0.259656518697739 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968363 chr20:55968365 nonsynonymous SNV 0.982 4 23 hm5C_associated_SNPs_23030 0 0 1 0 2 Ribosome 1 0.500231644195263 1 0.999536711609474 hm5C_site_23904 DeepMRMD:1;iRNA_m5C:0.999536711609474 23905 chr20 55968365 55968365 1 + C G GBM 55968364 + 55968344 55968384 41 TTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACT TTGGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGGACT < 41bp 1 0.0675879750372186 1 0.153093636035919 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968364 chr20:55968365 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_23031 0 0 1 0 2 Ribosome 1 0.50023163971916 1 0.99953672056168 hm5C_site_23905 DeepMRMD:1;iRNA_m5C:0.99953672056168 23906 chr20 55968365 55968365 1 + C G GBM 55968366 + 55968346 55968386 41 GGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTTA GGGGTGCAGCAGCTGCACCGCACCTTGATCCAGCGGACTTA < 41bp 1 0.211856332363652 1 0.0660496950149536 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968366 chr20:55968365 nonsynonymous SNV 0.982 4 20 hm5C_associated_SNPs_23032 0 0 1 0 2 Ribosome 1 0.500231643471623 1 0.999536713056755 hm5C_site_23906 DeepMRMD:1;iRNA_m5C:0.999536713056755 23907 chr4 79399128 79399128 1 + G A GBM 79399112 + 79399092 79399132 41 GAATTCACCCAGGCGAAGGTCATTATCAACGATACCGAGGA GAATTCACCCAGGCGAAGGTCATTATCAACGATACCAAGGA < 41bp 1 0.070132986999483 1 0.0905697345733643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79399112 chr4:79399128 nonsynonymous SNV 0.318 3 37 hm5C_associated_SNPs_23033 0 0 1 0 1 Nucleus 1 0.500249819573906 1 0.999500360852188 hm5C_site_23907 DeepMRMD:1;iRNA_m5C:0.999500360852188 23908 chr17 48433460 48433460 1 + G A GBM 48433472 + 48433452 48433492 41 TTCCACACGGTGCTGGAGAACAGCCTGGCCTGTGAGACCCT TTCCACACAGTGCTGGAGAACAGCCTGGCCTGTGAGACCCT < 41bp 1 0.333790970979409 1 0.299581617116928 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48433472 chr17:48433460 synonymous SNV . 0 9 hm5C_associated_SNPs_23034 0 0 1 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23908 DeepMRMD:1;iRNA_m5C:0.999536712157815 23909 chr22 32445981 32445981 1 + C T GBM 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGGCAGGCTGAAGTATGGT < 41bp 1 0.229469427432736 1 0.35995477437973 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445981 stopgain 1.000 1 31 hm5C_associated_SNPs_23036 0 0 0 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_23909 DeepMRMD:1;iRNA_m5C:0.999536712157815 23910 chr5 179150743 179150743 1 + C T GBM 179150759 + 179150739 179150779 41 CTTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA CTTCTTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA < 41bp 1 0.13537896387047 1 0.227688908576965 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150759 chr5:179150743 nonsynonymous SNV 0.561 1 5 hm5C_associated_SNPs_23037 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23910 DeepMRMD:1;iRNA_m5C:0.999536712157815 23911 chr5 179150743 179150743 1 + C T GBM 179150760 + 179150740 179150780 41 TTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAG TTCTTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAG < 41bp 1 0.274664196145383 1 0.197727650403976 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150760 chr5:179150743 nonsynonymous SNV 0.561 1 4 hm5C_associated_SNPs_23038 0 0 1 0 2 Nucleus 1 0.50023164380935 1 0.999536712381299 hm5C_site_23911 DeepMRMD:1;iRNA_m5C:0.999536712381299 23912 chr19 14674829 14674829 1 + C T GBM 14674819 + 14674799 14674839 41 CCTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCT CCTAACAGAGTACGCGGGGCCCCTTTTCATTTACCTGCTCT < 41bp 1 0.108607427793551 1 0.0783370733261108 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674819 chr19:14674829 synonymous SNV . 0 31 hm5C_associated_SNPs_23039 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23912 DeepMRMD:1;iRNA_m5C:0.999536712157815 23913 chr19 14674829 14674829 1 + C T GBM 14674820 + 14674800 14674840 41 CTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCTT CTAACAGAGTACGCGGGGCCCCTTTTCATTTACCTGCTCTT < 41bp 1 0.0304293413407903 1 0.0248109996318817 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674820 chr19:14674829 synonymous SNV . 0 30 hm5C_associated_SNPs_23040 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_23913 DeepMRMD:1;iRNA_m5C:0.999536712157815 23914 chr3 40499407 40499407 1 + C T GBM 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGTCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA < 41bp 1 0.44607238149991 1 0.0867933332920074 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499407 synonymous SNV . 0 3 hm5C_associated_SNPs_23041 0 0 1 0 1 Ribosome 1 0.50023164392116 1 0.99953671215768 hm5C_site_23914 DeepMRMD:1;iRNA_m5C:0.99953671215768 23915 chr5 150639411 150639411 1 + C T GBM 150639408 + 150639388 150639428 41 ACTCTGGAGCCTGACCCCATCATCGTTCCTGGAAATGTGAC ACTCTGGAGCCTGACCCCATCATTGTTCCTGGAAATGTGAC < 41bp 1 0.302958136568806 1 0.109937757253647 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GM2A ENSG00000196743 CDS Human protein_coding chr5:150639408 chr5:150639411 synonymous SNV . 0 24 hm5C_associated_SNPs_23042 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643827808 1 0.999536712344383 hm5C_site_23915 DeepMRMD:1;iRNA_m5C:0.999536712344383 23916 chr11 605204 605204 1 + A G GBM 605217 + 605197 605237 41 GTGTTGAAGCCAGTGGAGCCCTCTTTGGGGCTGCTGAGAGC GTGTTGAGGCCAGTGGAGCCCTCTTTGGGGCTGCTGAGAGC < 41bp 1 0.429368728276839 1 0.751663327217102 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:605217 chr11:605204 nonsynonymous SNV 0.034 0 8 hm5C_associated_SNPs_23043 0 0 1 0 1 Nucleus 1 0.500231494767565 0.496673345565796 0.999537010464871 hm5C_site_23916 DeepMRMD:0.496673345565796;iRNA_m5C:0.999537010464871 23917 chr22 41735890 41735890 1 + C A GBM 41735900 + 41735880 41735920 41 CCCGTGTTCCCCGGCGGGACCCCACTGCTACCACCTGTGGT CCCGTGTTCCACGGCGGGACCCCACTGCTACCACCTGTGGT < 41bp 1 0.0709426571889368 1 0.163995623588562 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735900 chr22:41735890 nonsynonymous SNV 0.951 3 11 hm5C_associated_SNPs_23044 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643923085 1 0.99953671215383 hm5C_site_23917 DeepMRMD:1;iRNA_m5C:0.99953671215383 23918 chr19 46878972 46878972 1 + C T GBM 46878977 + 46878957 46878997 41 GGCGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT GGCGACGAGCACAAGTGCTCCGTGGTGGACTCGCTGGACAT < 41bp 1 0.543654829489213 1 0.624387800693512 experiment 0.912690341021575 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46878977 chr19:46878972 nonsynonymous SNV 0.540 2 16 hm5C_associated_SNPs_23045 0 0 1 0 1 Ribosome 1 0.500231650013121 0.751224398612976 0.999536699973757 hm5C_site_23918 DeepMRMD:0.751224398612976;iRNA_m5C:0.999536699973757 23919 chr7 99954483 99954483 1 + G A GBM 99954487 + 99954467 99954507 41 TGGCAGTCCATCAAGGGGACCCACCTCACCATCACCCAGGG TGGCAGTCCATCAAGGAGACCCACCTCACCATCACCCAGGG < 41bp 1 0.222579081023558 1 0.0625664591789246 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG3L5P-PVRIG2P-PILRB ENSG00000121716 CDS Human protein_coding chr7:99954487 chr7:99954483 nonsynonymous SNV 0.005 1 17 hm5C_associated_SNPs_23046 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23919 DeepMRMD:1;iRNA_m5C:0.999536712157815 23920 chr7 100485931 100485931 1 + C G GBM 100485923 + 100485903 100485943 41 CACAGGAGGCCCTCCATACCCCCATGCCCCGTATGGTGCTG CACAGGAGGCCCTCCATACCCCCATGCCGCGTATGGTGCTG < 41bp 1 0.43927887739129 1 0.224176794290543 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100485923 chr7:100485931 nonsynonymous SNV 0.108 1 29 hm5C_associated_SNPs_23048 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_23920 DeepMRMD:1;iRNA_m5C:0.999536712157815 23921 chr13 113719256 113719256 1 + G A GBM 113719251 + 113719231 113719271 41 TGTTTTCTCTGTCCCCAAGGCCATCGAAAGTTTCGCCCTCA TGTTTTCTCTGTCCCCAAGGCCATCAAAAGTTTCGCCCTCA < 41bp 1 0.0142743602225276 1 0.111308038234711 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113719251 chr13:113719256 nonsynonymous SNV 0.054 4 26 hm5C_associated_SNPs_23049 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_23921 DeepMRMD:1;iRNA_m5C:0.999536712157814 23922 chr1 163306614 163306614 1 + G A GBM 163306605 + 163306585 163306625 41 ATTCACTTCAGAGAAGCATGCCGTGAAACGTATATGGAATT ATTCACTTCAGAGAAGCATGCCGTGAAACATATATGGAATT < 41bp 1 0.158223079091634 1 0.330177307128906 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163306605 chr1:163306614 synonymous SNV . 0 30 hm5C_associated_SNPs_23050 0 0 1 0 2 Cytosol 1 0.500231568430669 1 0.999536863138662 hm5C_site_23922 DeepMRMD:1;iRNA_m5C:0.999536863138662 23923 chr17 48757178 48757178 1 + G A GBM 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTGACATTTGCTCTGAACTAGATGATACGAATGATGTC < 41bp 1 0.452665692960203 1 0.434590816497803 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757178 stopgain 0.996 1 23 hm5C_associated_SNPs_23051 0 0 0 0 2 Endoplasmic reticulum 1 0.500234164836228 1 0.999531670327545 hm5C_site_23923 DeepMRMD:1;iRNA_m5C:0.999531670327545 23924 chr21 44450011 44450011 1 + A G GBM 44450012 + 44449992 44450032 41 TGCCGCAGGAGCTGTTGTCACCATCACCACGCCCGTGAACA TGCCGCAGGAGCTGTTGTCGCCATCACCACGCCCGTGAACA < 41bp 1 0.0584524910588618 1 0.197430402040482 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44450012 chr21:44450011 nonsynonymous SNV 0.748 1 20 hm5C_associated_SNPs_23052 0 0 0 0 1 Ribosome 1 0.500231642702628 1 0.999536714594743 hm5C_site_23924 DeepMRMD:1;iRNA_m5C:0.999536714594743 23925 chr10 128830507 128830507 1 + G A GBM 128830517 + 128830497 128830537 41 AGCATGCAGAGCCTTGGGAGCTGCACCATTAGCAAGGACTC AGCATGCAGAACCTTGGGAGCTGCACCATTAGCAAGGACTC < 41bp 1 0.428154111610895 1 0.252163708209991 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128830517 chr10:128830507 nonsynonymous SNV 0.989 1 11 hm5C_associated_SNPs_23053 0 0 1 0 1 Nucleus 1 0.500231053705178 1 0.999537892589643 hm5C_site_23925 DeepMRMD:1;iRNA_m5C:0.999537892589643 23926 chr12 51108366 51108366 1 + G A GBM 51108355 + 51108335 51108375 41 ATACATGTGTGACAAACTTGCCAAAGCCCCGGCAAAAACAA ATACATGTGTGACAAACTTGCCAAAGCCCCGACAAAAACAA < 41bp 1 0.195243243156256 1 0.237670332193375 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51108355 chr12:51108366 synonymous SNV . 0 32 hm5C_associated_SNPs_23054 0 0 0 0 1 Nucleus 1 0.500231643929423 1 0.999536712141154 hm5C_site_23926 DeepMRMD:1;iRNA_m5C:0.999536712141154 23927 chr8 144801639 144801639 1 + G A GBM 144801634 + 144801614 144801654 41 AGCTGATCCTGGAGACCATCCCACCGCCATCTGAGGAGGGT AGCTGATCCTGGAGACCATCCCACCACCATCTGAGGAGGGT < 41bp 1 0.0678618832703915 1 0.220223754644394 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144801634 chr8:144801639 synonymous SNV . 0 26 hm5C_associated_SNPs_23055 0 0 1 0 0 chromatin 1 0.500231643504859 1 0.999536712990283 hm5C_site_23927 DeepMRMD:1;iRNA_m5C:0.999536712990283 23928 chrX 153627886 153627886 1 + G A GBM 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAGTTTCCACTTTGTGGCCACATGGTGTCAGATGAATAT < 41bp 1 0.24286856285992 1 0.495407044887543 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627886 synonymous SNV . 0 11 hm5C_associated_SNPs_23056 0 0 1 0 2 Cytosol 1 0.500231925224565 1 0.999536149550869 hm5C_site_23928 DeepMRMD:1;iRNA_m5C:0.999536149550869 23929 chr12 105519878 105519878 1 + A G GBM 105519876 + 105519856 105519896 41 ATTTGCACATAGTATTCGGTCAATTTTTGCAAATGTAGAAG ATTTGCACATAGTATTCGGTCAGTTTTTGCAAATGTAGAAG < 41bp 1 0.243234021675019 1 0.0981546342372894 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519876 chr12:105519878 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_23058 0 0 1 0 2 unknown 1 0.500231625074666 1 0.999536749850668 hm5C_site_23929 DeepMRMD:1;iRNA_m5C:0.999536749850668 23930 chr12 105519878 105519878 1 + A G GBM 105519885 + 105519865 105519905 41 TAGTATTCGGTCAATTTTTGCAAATGTAGAAGCCAAACTTG TAGTATTCGGTCAGTTTTTGCAAATGTAGAAGCCAAACTTG < 41bp 1 0.378215958084302 1 0.303459465503693 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519885 chr12:105519878 nonsynonymous SNV 0.999 0 14 hm5C_associated_SNPs_23059 0 0 1 0 2 unknown 1 0.500231643920769 1 0.999536712158462 hm5C_site_23930 DeepMRMD:1;iRNA_m5C:0.999536712158462 23931 chr12 105519878 105519878 1 + A G GBM 105519898 + 105519878 105519918 41 ATTTTTGCAAATGTAGAAGCCAAACTTGGTAATGTAAATCG GTTTTTGCAAATGTAGAAGCCAAACTTGGTAATGTAAATCG < 41bp 1 0.211086921933359 1 0.101297736167908 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519898 chr12:105519878 nonsynonymous SNV 0.999 0 1 hm5C_associated_SNPs_23060 0 0 1 0 2 unknown 1 0.500231573472038 1 0.999536853055924 hm5C_site_23931 DeepMRMD:1;iRNA_m5C:0.999536853055924 23932 chr3 47041686 47041686 1 + G T GBM 47041673 + 47041653 47041693 41 CCTTTGACCTGGGCCTGGAACGGTCTAGTGTAGGATCAGGC CCTTTGACCTGGGCCTGGAACGGTCTAGTGTAGTATCAGGC < 41bp 1 0.111181853920511 1 0.709576010704041 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041673 chr3:47041686 nonsynonymous SNV 0.132 1 34 hm5C_associated_SNPs_23061 0 0 1 0 1 Nucleus 1 0.500231643921092 0.580847978591918 0.999536712157815 hm5C_site_23932 DeepMRMD:0.580847978591918;iRNA_m5C:0.999536712157815 23933 chr2 46609718 46609718 1 + G A GBM 46609709 + 46609689 46609729 41 GCCACCCAGTACCAGGACTACAGCCTGTCGTCAGCCCACAA GCCACCCAGTACCAGGACTACAGCCTGTCATCAGCCCACAA < 41bp 1 0.378074185483464 1 0.108287572860718 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46609709 chr2:46609718 synonymous SNV . 0 30 hm5C_associated_SNPs_23062 0 0 1 0 1 Cytosol 1 0.500231643921044 1 0.999536712157913 hm5C_site_23933 DeepMRMD:1;iRNA_m5C:0.999536712157913 23934 chr1 16199442 16199442 1 + G C GBM 16199454 + 16199434 16199474 41 GGGTGACAGAGACCTACGCACGGATTATAATGAACCAGGCA GGGTGACACAGACCTACGCACGGATTATAATGAACCAGGCA < 41bp 1 0.150468715045549 1 0.551310181617737 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16199454 chr1:16199442 nonsynonymous SNV 0.998 3 9 hm5C_associated_SNPs_23063 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.897379636764526 0.999536712157815 hm5C_site_23934 DeepMRMD:0.897379636764526;iRNA_m5C:0.999536712157815 23935 chr10 103827288 103827288 1 + C T GBM 103827278 + 103827258 103827298 41 CCGAGTTTGCCCAGCACCGCCGGCTTGATGCTCACCTCCCC CCGAGTTTGCCCAGCACCGCCGGCTTGATGTTCACCTCCCC < 41bp 1 0.497970228482292 1 0.709940016269684 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HPS6 ENSG00000166189 CDS Human protein_coding chr10:103827278 chr10:103827288 nonsynonymous SNV 0.580 0 31 hm5C_associated_SNPs_23064 0 0 1 0 0 Ribosome 1 0.500231643921123 0.580119967460632 0.999536712157755 hm5C_site_23935 DeepMRMD:0.580119967460632;iRNA_m5C:0.999536712157755 23936 chr15 22969226 22969226 1 + C T GBM 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACGTTGGACGGCTTCGACGCCATGTTCCG < 41bp 1 0.511155775865704 1 0.261859208345413 experiment 0.977688448268591 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969226 synonymous SNV . 0 16 hm5C_associated_SNPs_23065 0 0 1 0 1 Cytosol 1 0.500231643921371 1 0.999536712157258 hm5C_site_23936 DeepMRMD:1;iRNA_m5C:0.999536712157258 23937 chr5 6651998 6651998 1 + C T GBM 6652008 + 6651988 6652028 41 AAAGCCTATGCCACTGTTGGCGTGTACAATGGCGATTATGT AAAGCCTATGTCACTGTTGGCGTGTACAATGGCGATTATGT < 41bp 1 0.135604641096871 1 0.128128081560135 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6652008 chr5:6651998 nonsynonymous SNV 0.002 2 11 hm5C_associated_SNPs_23066 0 0 1 0 1 Ribosome 1 0.500231643777956 1 0.999536712444089 hm5C_site_23937 DeepMRMD:1;iRNA_m5C:0.999536712444089 23938 chr11 73074847 73074847 1 + C T GBM 73074840 + 73074820 73074860 41 ATCCGTGACCGCAGGAACAGCATGAAGCTCCAGCATGCGGC ATCCGTGACCGCAGGAACAGCATGAAGTTCCAGCATGCGGC < 41bp 1 0.38864884191212 1 0.163143575191498 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73074840 chr11:73074847 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_23067 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23938 DeepMRMD:1;iRNA_m5C:0.999536712157815 23939 chr3 58067448 58067448 1 + G C GBM 58067455 + 58067435 58067475 41 CCAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAAC CCAAGCTCAAGCCCGGGGCTCCTCTCAAACCCAAACTCAAC < 41bp 1 0.014456608218596 1 0.0318981111049652 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067455 chr3:58067448 synonymous SNV . 0 14 hm5C_associated_SNPs_23068 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23939 DeepMRMD:1;iRNA_m5C:0.999536712157815 23940 chr3 58067448 58067448 1 + G C GBM 58067456 + 58067436 58067476 41 CAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAACC CAAGCTCAAGCCCGGGGCTCCTCTCAAACCCAAACTCAACC < 41bp 1 0.0419385297045123 1 0.200260102748871 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067456 chr3:58067448 synonymous SNV . 0 13 hm5C_associated_SNPs_23069 0 0 1 0 2 Cytosol 1 0.500231639895148 1 0.999536720209704 hm5C_site_23940 DeepMRMD:1;iRNA_m5C:0.999536720209704 23941 chr11 61898029 61898029 1 + G A GBM 61898018 + 61897998 61898038 41 CAGGGCGAGCAGAAGGCTTGCCAAGAAGACTGCCGAAGAGC CAGGGCGAGCAGAAGGCTTGCCAAGAAGACTACCGAAGAGC < 41bp 1 0.161405415145976 1 0.156053632497787 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61898018 chr11:61898029 nonsynonymous SNV 0.144 0 32 hm5C_associated_SNPs_23070 0 0 1 0 1 chromatin 1 0.500231643921071 1 0.999536712157857 hm5C_site_23941 DeepMRMD:1;iRNA_m5C:0.999536712157857 23942 chr1 145518168 145518168 1 + C T GBM 145518156 + 145518136 145518176 41 GTTGTCCTGAGATTCTGCATCACTGTTAGTCACCTCAATCG GTTGTCCTGAGATTCTGCATCACTGTTAGTCATCTCAATCG < 41bp 1 0.225496552260232 1 0.0369031727313995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145518156 chr1:145518168 synonymous SNV . 0 33 hm5C_associated_SNPs_23071 0 0 1 0 1 Ribosome 1 0.500231643921086 1 0.999536712157829 hm5C_site_23942 DeepMRMD:1;iRNA_m5C:0.999536712157829 23943 chr6 26091740 26091740 1 + G T GBM 26091728 + 26091708 26091748 41 GGAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACC GGAAAGGCACAAGATTCGGGCCAGGCAGAACATGGCCTACC < 41bp 1 0.335050922938622 1 0.288356721401215 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091728 chr6:26091740 nonsynonymous SNV 0.974 3 33 hm5C_associated_SNPs_23072 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921095 1 0.99953671215781 hm5C_site_23943 DeepMRMD:1;iRNA_m5C:0.99953671215781 23944 chr6 26091740 26091740 1 + G T GBM 26091729 + 26091709 26091749 41 GAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACCT GAAAGGCACAAGATTCGGGCCAGGCAGAACATGGCCTACCT < 41bp 1 0.445527251536599 1 0.382254153490067 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091729 chr6:26091740 nonsynonymous SNV 0.974 3 32 hm5C_associated_SNPs_23073 0 0 0 0 1 Endoplasmic reticulum 1 0.500231401497938 1 0.999537197004124 hm5C_site_23944 DeepMRMD:1;iRNA_m5C:0.999537197004124 23945 chr10 73039785 73039785 1 + G T GBM 73039798 + 73039778 73039818 41 CAGGAAGGCCTGGATGAGGCCACCGGTGAGCCCGCCCCACT CAGGAAGTCCTGGATGAGGCCACCGGTGAGCCCGCCCCACT < 41bp 1 0.673073516122581 1 0.585698306560516 experiment 0.653852967754837 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC5B ENSG00000107731 CDS Human protein_coding chr10:73039798 chr10:73039785 nonsynonymous SNV 0.997 1 8 hm5C_associated_SNPs_23074 0 0 1 0 1 nucleoplasm 1 0.500231625825175 0.828603386878968 0.99953674834965 hm5C_site_23945 DeepMRMD:0.828603386878968;iRNA_m5C:0.99953674834965 23946 chr2 71577125 71577125 1 + G A GBM 71577126 + 71577106 71577146 41 TAATTTCATCTGTAAGCCAGCAAGAGCGGATCCCACATGAA TAATTTCATCTGTAAGCCAACAAGAGCGGATCCCACATGAA < 41bp 1 0.546074924595494 1 0.708515703678131 experiment 0.907850150809013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71577126 chr2:71577125 synonymous SNV . 0 20 hm5C_associated_SNPs_23075 0 0 1 0 0 Nucleus 1 0.500231643921161 0.582968592643738 0.999536712157677 hm5C_site_23946 DeepMRMD:0.582968592643738;iRNA_m5C:0.999536712157677 23947 chr1 155288033 155288033 1 + A G GBM 155288044 + 155288024 155288064 41 TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG TGAAGCTCTGTTGCCGGGAGCAGCCCTATTACCTGAACCTG < 41bp 1 0.324547354708735 1 0.345382511615753 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155288044 chr1:155288033 nonsynonymous SNV 0.997 1 10 hm5C_associated_SNPs_23076 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23947 DeepMRMD:1;iRNA_m5C:0.999536712157815 23948 chr22 29695792 29695792 1 + C A GBM 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGGCCCCCTGGACCTTTGATGGAAAAGATGGGAG < 41bp 1 0.434522213551693 1 0.170402020215988 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695792 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_23077 0 0 1 0 1 Cytosol 1 0.500239036342476 1 0.999521927315047 hm5C_site_23948 DeepMRMD:1;iRNA_m5C:0.999521927315047 23949 chr1 231700308 231700308 1 + C T GBM 231700298 + 231700278 231700318 41 CCTCTGATGCACAGGATAAGCAGTTTGGTACTTGGAGACTG CCTCTGATGCACAGGATAAGCAGTTTGGTATTTGGAGACTG < 41bp 1 0.448663234834167 1 0.0553272366523743 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSNAX ENSG00000116918 CDS Human protein_coding chr1:231700298 chr1:231700308 nonsynonymous SNV 0.810 2 31 hm5C_associated_SNPs_23078 0 0 1 0 1 Ribosome 1 0.50023164392106 1 0.999536712157881 hm5C_site_23949 DeepMRMD:1;iRNA_m5C:0.999536712157881 23950 chr9 131196696 131196696 1 + G A GBM 131196705 + 131196685 131196725 41 ACAGCTACCTCGGACGGAAGCAGGTGAACCCTGAGAAGGAG ACAGCTACCTCAGACGGAAGCAGGTGAACCCTGAGAAGGAG < 41bp 1 0.542911536107551 1 0.853305578231812 experiment 0.914176927784898 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131196705 chr9:131196696 nonsynonymous SNV 0.900 4 12 hm5C_associated_SNPs_23080 0 0 1 0 1 chromatin 1 0.500231643843461 0.293388843536376 0.999536712313079 hm5C_site_23950 DeepMRMD:0.293388843536376;iRNA_m5C:0.999536712313079 23951 chrX 73046727 73046727 1 + T C GBM 73046709 - 73046689 73046729 41 GGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC GGGCAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC < 41bp 1 0.288530388725166 1 0.319032371044159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046709 chrX:73046727 . . 0 3 hm5C_associated_SNPs_23081 0 0 1 2 0 unknown 1 0.500231876313128 1 0.999536247373744 hm5C_site_23951 DeepMRMD:1;iRNA_m5C:0.999536247373744 23952 chrX 73046727 73046727 1 + T C GBM 73046721 - 73046701 73046741 41 TCTTAAGACCTGGGACAGGACACATGGAAGGCCTAAGAACT TCTTAAGACCTGGGGCAGGACACATGGAAGGCCTAAGAACT < 41bp 1 0.21553056842254 1 0.119330406188965 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046721 chrX:73046727 . . 0 15 hm5C_associated_SNPs_23082 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_23952 DeepMRMD:1;iRNA_m5C:0.999536712157815 23953 chrX 73046727 73046727 1 + T C GBM 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGAAGTCTTAAGACCTGGGGCAGGACACATGGAAGGCCTAA < 41bp 1 0.565774809592283 1 0.583631873130798 experiment 0.868450380815435 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046727 . . 0 20 hm5C_associated_SNPs_23083 0 0 1 2 0 unknown 1 0.500231643912424 0.832736253738404 0.999536712175152 hm5C_site_23953 DeepMRMD:0.832736253738404;iRNA_m5C:0.999536712175152 23954 chr11 43413469 43413469 1 + C A GBM 43413476 + 43413456 43413496 41 GGAGTATAGATGACATAGGTCACCTCATTCATGAAGGCCTA GGAGTATAGATGAAATAGGTCACCTCATTCATGAAGGCCTA < 41bp 1 0.306295433099138 1 0.0431027114391327 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTC17 ENSG00000052841 CDS Human protein_coding chr11:43413476 chr11:43413469 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_23084 0 0 1 0 1 Nucleus 1 0.500231643912393 1 0.999536712175214 hm5C_site_23954 DeepMRMD:1;iRNA_m5C:0.999536712175214 23955 chr20 2843940 2843940 1 + G A GBM 2843957 + 2843937 2843977 41 CTCGTGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG CTCATGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG < 41bp 1 0.259758523814754 1 0.0860644578933716 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843957 chr20:2843940 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_23085 0 0 0 1 1 chromatin 1 0.500231643977846 1 0.999536712044308 hm5C_site_23955 DeepMRMD:1;iRNA_m5C:0.999536712044308 23956 chr16 27760994 27760994 1 + G T GBM 27761012 + 27760992 27761032 41 GTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG GTTCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG < 41bp 1 0.581662235112718 1 0.92294454574585 experiment 0.836675529774564 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27761012 chr16:27760994 nonsynonymous SNV 0.990 0 3 hm5C_associated_SNPs_23086 0 0 0 0 1 Nucleus 1 0.500231905845486 0.1541109085083 0.999536188309027 hm5C_site_23956 DeepMRMD:0.1541109085083;iRNA_m5C:0.999536188309027 23957 chr5 17275370 17275370 1 + C T GBM 17275381 + 17275361 17275401 41 CAATGTGAACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG CAATGTGAATGACGAGAAAGCCAAGGAGAAAGACAAGAAGG < 41bp 1 0.391049605783987 1 0.516731858253479 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275381 chr5:17275370 synonymous SNV . 0 10 hm5C_associated_SNPs_23087 0 0 1 0 1 Nucleus 1 0.500231643930796 0.966536283493042 0.999536712138408 hm5C_site_23957 DeepMRMD:0.966536283493042;iRNA_m5C:0.999536712138408 23958 chr22 32234828 32234828 1 + C T GBM 32234816 + 32234796 32234836 41 CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCTGAGGTGAG < 41bp 1 0.143490832395689 1 0.0738464891910553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32234816 chr22:32234828 stopgain 0.998 1 33 hm5C_associated_SNPs_23088 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_23958 DeepMRMD:1;iRNA_m5C:0.999536712157815 23959 chr11 120352059 120352059 1 + C T GBM 120352068 + 120352048 120352088 41 GCAGCCCATGACAGGCATCCCTGCTGTGGAATCCACCCACC GCAGCCCATGATAGGCATCCCTGCTGTGGAATCCACCCACC < 41bp 1 0.578144568828821 1 0.0980882048606873 experiment 0.843710862342357 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120352068 chr11:120352059 nonsynonymous SNV 0.005 1 12 hm5C_associated_SNPs_23089 0 0 1 0 1 Cytosol 1 0.500231643921031 1 0.999536712157938 hm5C_site_23959 DeepMRMD:1;iRNA_m5C:0.999536712157938 23960 chr14 105936268 105936268 1 + C T GBM 105936253 + 105936233 105936273 41 TGATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGG TGATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGTGGCGG < 41bp 1 0.199267342759794 1 0.0962875485420227 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936253 chr14:105936268 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_23090 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23960 DeepMRMD:1;iRNA_m5C:0.999536712157815 23961 chr14 105936268 105936268 1 + C T GBM 105936255 + 105936235 105936275 41 ATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGGAT ATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGTGGCGGAT < 41bp 1 0.53072075464455 1 0.257138133049011 experiment 0.9385584907109 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936255 chr14:105936268 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_23091 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23961 DeepMRMD:1;iRNA_m5C:0.999536712157815 23962 chr14 105936268 105936268 1 + C T GBM 105936265 + 105936245 105936285 41 GCTCCCTGCCCCCAGTCAAGCGGCGGCGGATGAACTGGATC GCTCCCTGCCCCCAGTCAAGCGGTGGCGGATGAACTGGATC < 41bp 1 0.61098622742138 1 0.686614811420441 experiment 0.77802754515724 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936265 chr14:105936268 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_23092 0 0 1 0 2 Cytosol 1 0.500231643921092 0.626770377159118 0.999536712157815 hm5C_site_23962 DeepMRMD:0.626770377159118;iRNA_m5C:0.999536712157815 23963 chr14 105936268 105936268 1 + C T GBM 105936285 + 105936265 105936305 41 CGGCGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT CGGTGGCGGATGAACTGGATCGACGCCCCGGATGACGTGTT < 41bp 1 0.543264432705592 1 0.50993424654007 experiment 0.913471134588815 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936285 chr14:105936268 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23093 0 0 1 0 2 Cytosol 1 0.500231643921095 0.98013150691986 0.999536712157809 hm5C_site_23963 DeepMRMD:0.98013150691986;iRNA_m5C:0.999536712157809 23964 chr12 58109576 58109576 1 + G A GBM 58109596 + 58109576 58109616 41 GACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTA AACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTA < 41bp 1 0.431616085370223 1 0.625046014785767 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58109596 chr12:58109576 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_23094 0 0 1 0 1 Nucleus 1 0.50023164499193 0.749907970428466 0.999536710016141 hm5C_site_23964 DeepMRMD:0.749907970428466;iRNA_m5C:0.999536710016141 23965 chr7 134215407 134215407 1 + A G GBM 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCGAAGTGAAAG < 41bp 1 0.269998597673646 1 0.372850239276886 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215407 nonsynonymous SNV 0.102 0 32 hm5C_associated_SNPs_23096 0 0 1 0 1 exosome 1 0.500267701209801 1 0.999464597580398 hm5C_site_23965 DeepMRMD:1;iRNA_m5C:0.999464597580398 23966 chr2 27456321 27456321 1 + G A GBM 27456304 + 27456284 27456324 41 CCGGGTGCTGGGCACCTCCCCTGAAGCCATTGACTCGGCTG CCGGGTGCTGGGCACCTCCCCTGAAGCCATTGACTCGACTG < 41bp 1 0.671352117262179 1 0.320110350847244 experiment 0.657295765475642 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27456304 chr2:27456321 nonsynonymous SNV 0.910 5 38 hm5C_associated_SNPs_23097 0 0 1 0 1 Exosome 1 0.500231643921112 1 0.999536712157775 hm5C_site_23966 DeepMRMD:1;iRNA_m5C:0.999536712157775 23967 chr11 14666553 14666553 1 + G A GBM 14666571 + 14666551 14666591 41 TTGCAAAATATTCAGGAGACCGTCGTTGCCTTGTATTTCCA TTACAAAATATTCAGGAGACCGTCGTTGCCTTGTATTTCCA < 41bp 1 0.187843321831872 1 0.0992560684680939 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14666571 chr11:14666553 nonsynonymous SNV 0.886 0 3 hm5C_associated_SNPs_23098 0 0 1 0 1 chromatin 1 0.500231655774847 1 0.999536688450307 hm5C_site_23967 DeepMRMD:1;iRNA_m5C:0.999536688450307 23968 chr2 233684613 233684613 1 + A G GBM 233684612 + 233684592 233684632 41 AAGAGGAAGAAAGACAGCAGCAAGAAGAAGCTCTTAGAAGA AAGAGGAAGAAAGACAGCAGCGAGAAGAAGCTCTTAGAAGA < 41bp 1 0.691938426846069 1 0.706699073314667 experiment 0.616123146307863 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233684612 chr2:233684613 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_23099 0 0 1 0 1 Nucleus 1 0.500231643913646 0.586601853370666 0.999536712172709 hm5C_site_23968 DeepMRMD:0.586601853370666;iRNA_m5C:0.999536712172709 23969 chr2 233684613 233684613 1 + A G GBM 233684622 + 233684602 233684642 41 AAGACAGCAGCAAGAAGAAGCTCTTAGAAGACTGGAAGAGA AAGACAGCAGCGAGAAGAAGCTCTTAGAAGACTGGAAGAGA < 41bp 1 0.149111450814432 1 0.191605299711227 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233684622 chr2:233684613 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_23100 0 0 1 0 1 Nucleus 1 0.50023164391881 1 0.99953671216238 hm5C_site_23969 DeepMRMD:1;iRNA_m5C:0.99953671216238 23970 chr19 41778018 41778018 1 + C T GBM 41778031 + 41778011 41778051 41 GAGCACCCACCAGCTTCCTCCCGCCTGAAGCTTCTCAACTC GAGCACCTACCAGCTTCCTCCCGCCTGAAGCTTCTCAACTC < 41bp 1 0.192824370159743 1 0.174564480781555 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41778031 chr19:41778018 synonymous SNV . 0 8 hm5C_associated_SNPs_23101 0 0 1 0 0 Cytosol 1 0.500231643896559 1 0.999536712206883 hm5C_site_23970 DeepMRMD:1;iRNA_m5C:0.999536712206883 23971 chr2 128867298 128867298 1 + C A GBM 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGATACCCTTGAGGCTATTCTACTGA < 41bp 1 0.0422321637607687 1 0.0741803050041199 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867298 nonsynonymous SNV 0.186 1 32 hm5C_associated_SNPs_23102 0 0 1 0 2 Nucleus 1 0.500231643919344 1 0.999536712161313 hm5C_site_23971 DeepMRMD:1;iRNA_m5C:0.999536712161313 23972 chr7 129394920 129394920 1 + G A GBM 129394901 + 129394881 129394921 41 ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACGG ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACAG < 41bp 1 0.621882559402356 1 0.187761157751083 experiment 0.756234881195287 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394901 chr7:129394920 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_23103 0 0 1 0 1 chromatin 1 0.500231643931653 1 0.999536712136693 hm5C_site_23972 DeepMRMD:1;iRNA_m5C:0.999536712136693 23973 chr16 68331157 68331157 1 + C T GBM 68331160 + 68331140 68331180 41 CTATCACCAGAGGCACCCAGCAGCTTTGCTTTTGTGTCCTG CTATCACCAGAGGCACCTAGCAGCTTTGCTTTTGTGTCCTG < 41bp 1 0.545887575274411 1 0.562118113040924 experiment 0.908224849451179 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68331160 chr16:68331157 stopgain 0.995 1 18 hm5C_associated_SNPs_23104 0 0 1 0 1 Ribosome 1 0.50023166503062 0.875763773918152 0.99953666993876 hm5C_site_23973 DeepMRMD:0.875763773918152;iRNA_m5C:0.99953666993876 23974 chr16 731823 731823 1 + G T GBM 731817 + 731797 731837 41 CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA CTGGAAGAGTGCCAGCGAAACCACGATGGTGATGAGGACGA < 41bp 1 0.414474301866063 1 0.148663848638535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STUB1 ENSG00000103266 CDS Human protein_coding chr16:731817 chr16:731823 nonsynonymous SNV 0.997 0 27 hm5C_associated_SNPs_23105 0 0 1 0 2 Endoplasmic reticulum 1 0.500221612684268 1 0.999556774631464 hm5C_site_23974 DeepMRMD:1;iRNA_m5C:0.999556774631464 23975 chrX 77378404 77378404 1 + T A GBM 77378418 + 77378398 77378438 41 TGGTGGTGGAATGGCTTTTACCTTCCTTAAGGTGCTCAACA TGGTGGAGGAATGGCTTTTACCTTCCTTAAGGTGCTCAACA < 41bp 1 0.0488952602715474 1 0.26745742559433 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378418 chrX:77378404 synonymous SNV . 0 7 hm5C_associated_SNPs_23106 0 0 1 0 2 Ribosome 1 0.500231645572721 1 0.999536708854559 hm5C_site_23975 DeepMRMD:1;iRNA_m5C:0.999536708854559 23976 chr19 35828889 35828889 1 + C T GBM 35828874 + 35828854 35828894 41 GAAGTACTGCTGTCAGGTCTCCAATGACGTGGGCCCGGGAA GAAGTACTGCTGTCAGGTCTCCAATGACGTGGGCCTGGGAA < 41bp 1 0.251254305305186 1 0.767759680747986 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD22 ENSG00000012124 CDS Human protein_coding chr19:35828874 chr19:35828889 nonsynonymous SNV 0.000 0 36 hm5C_associated_SNPs_23107 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643931548 0.464480638504028 0.999536712136905 hm5C_site_23976 DeepMRMD:0.464480638504028;iRNA_m5C:0.999536712136905 23977 chr1 16260498 16260498 1 + C G GBM 16260507 + 16260487 16260527 41 AAAAACAGCACCTCCAGTGACAAACAACTCTGAGATACAAG AAAAACAGCACGTCCAGTGACAAACAACTCTGAGATACAAG < 41bp 1 0.0554188754961438 1 0.278106302022934 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16260507 chr1:16260498 nonsynonymous SNV 0.019 1 12 hm5C_associated_SNPs_23108 0 0 1 0 0 Endoplasmic reticulum 1 0.500231609276436 1 0.999536781447128 hm5C_site_23977 DeepMRMD:1;iRNA_m5C:0.999536781447128 23978 chr1 16260498 16260498 1 + C G GBM 16260511 + 16260491 16260531 41 ACAGCACCTCCAGTGACAAACAACTCTGAGATACAAGCCTC ACAGCACGTCCAGTGACAAACAACTCTGAGATACAAGCCTC < 41bp 1 0.245880994563199 1 0.490259319543839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16260511 chr1:16260498 nonsynonymous SNV 0.019 1 8 hm5C_associated_SNPs_23109 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643956425 1 0.99953671208715 hm5C_site_23978 DeepMRMD:1;iRNA_m5C:0.99953671208715 23979 chr5 147585617 147585617 1 + G A GBM 147585619 + 147585599 147585639 41 GTGTCTTCAGTCAGGGAGGACAGGTCAGTGCCTATTTTTAT GTGTCTTCAGTCAGGGAGAACAGGTCAGTGCCTATTTTTAT < 41bp 1 0.652032979539774 1 0.563299536705017 experiment 0.695934040920452 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPINK6 ENSG00000178172 CDS Human protein_coding chr5:147585619 chr5:147585617 nonsynonymous SNV 0.701 0 19 hm5C_associated_SNPs_23110 0 0 0 0 2 unknown 1 0.500231643785642 0.873400926589966 0.999536712428716 hm5C_site_23979 DeepMRMD:0.873400926589966;iRNA_m5C:0.999536712428716 23980 chr11 126143239 126143239 1 + G A GBM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTAGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.489521203365099 1 0.1925890147686 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143239 synonymous SNV . 0 4 hm5C_associated_SNPs_23112 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_23980 DeepMRMD:1;iRNA_m5C:0.999536712157815 23981 chr7 142460295 142460295 1 + C T GBM 142460282 + 142460262 142460302 41 TCTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGC TCTCTTCCTGATCCTCACAGCCGACTACCCAGATGAGCTGC < 41bp 1 0.103839293429668 1 0.227426111698151 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460282 chr7:142460295 synonymous SNV . 0 34 hm5C_associated_SNPs_23113 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_23981 DeepMRMD:1;iRNA_m5C:0.999536712157815 23982 chr7 142460295 142460295 1 + C T GBM 142460283 + 142460263 142460303 41 CTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCA CTCTTCCTGATCCTCACAGCCGACTACCCAGATGAGCTGCA < 41bp 1 0.177989038934271 1 0.407208353281021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460283 chr7:142460295 synonymous SNV . 0 33 hm5C_associated_SNPs_23114 0 0 0 0 1 Cytosol 1 0.500231643926143 1 0.999536712147715 hm5C_site_23982 DeepMRMD:1;iRNA_m5C:0.999536712147715 23983 chr7 142460295 142460295 1 + C T GBM 142460286 + 142460266 142460306 41 TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTG TTCCTGATCCTCACAGCCGACTACCCAGATGAGCTGCAGTG < 41bp 1 0.0969338274941445 1 0.124966204166412 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460286 chr7:142460295 synonymous SNV . 0 30 hm5C_associated_SNPs_23115 0 0 0 0 1 Cytosol 1 0.500231643921132 1 0.999536712157737 hm5C_site_23983 DeepMRMD:1;iRNA_m5C:0.999536712157737 23984 chr7 142460295 142460295 1 + C T GBM 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGACTACCCAGATGAGCTGCAGTGCCT < 41bp 1 0.171449709205806 1 0.408946007490158 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460295 synonymous SNV . 0 27 hm5C_associated_SNPs_23116 0 0 0 0 1 Cytosol 1 0.500231646399685 1 0.999536707200629 hm5C_site_23984 DeepMRMD:1;iRNA_m5C:0.999536707200629 23985 chr7 142460295 142460295 1 + C T GBM 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGATGAGCTGCAGTGCCTG < 41bp 1 0.491637866122042 1 0.640694558620453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460295 synonymous SNV . 0 26 hm5C_associated_SNPs_23117 0 0 0 0 1 Cytosol 1 0.500231643567745 0.718610882759094 0.999536712864511 hm5C_site_23985 DeepMRMD:0.718610882759094;iRNA_m5C:0.999536712864511 23986 chr7 142460295 142460295 1 + C T GBM 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGATGAGCTGCAGTGCCTGG < 41bp 1 0.548851017588772 1 0.706177532672882 experiment 0.902297964822455 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460295 synonymous SNV . 0 25 hm5C_associated_SNPs_23118 0 0 0 0 1 Cytosol 1 0.500231640253756 0.587644934654236 0.999536719492488 hm5C_site_23986 DeepMRMD:0.587644934654236;iRNA_m5C:0.999536719492488 23987 chr7 142460295 142460295 1 + C T GBM 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGATGAGCTGCAGTGCCTGGATGCTCCTGTG < 41bp 1 0.283718803520401 1 0.198862165212631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460295 synonymous SNV . 0 14 hm5C_associated_SNPs_23120 0 0 0 0 1 Cytosol 1 0.500231643977305 1 0.99953671204539 hm5C_site_23987 DeepMRMD:1;iRNA_m5C:0.99953671204539 23988 chr7 142460295 142460295 1 + C T GBM 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGATGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG < 41bp 1 0.226460912547505 1 0.115151464939117 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460295 synonymous SNV . 0 9 hm5C_associated_SNPs_23121 0 0 0 0 1 Cytosol 1 0.500231645926156 1 0.999536708147688 hm5C_site_23988 DeepMRMD:1;iRNA_m5C:0.999536708147688 23989 chr7 142460295 142460295 1 + C T GBM 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA TGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.451683962762298 1 0.30585965514183 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460295 synonymous SNV . 0 1 hm5C_associated_SNPs_23122 0 0 0 0 1 Cytosol 1 0.500234749016634 1 0.999530501966731 hm5C_site_23989 DeepMRMD:1;iRNA_m5C:0.999530501966731 23990 chr1 33745906 33745906 1 + G C GBM 33745921 + 33745901 33745941 41 ATCAAGACAATCCAGGGCCACGGCCTGCTTGGCCCCCCCAA ATCAACACAATCCAGGGCCACGGCCTGCTTGGCCCCCCCAA < 41bp 1 0.458143785608048 1 0.616447925567627 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33745921 chr1:33745906 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_23123 0 0 1 0 0 Nucleus 1 0.500231643888644 0.767104148864746 0.999536712222711 hm5C_site_23990 DeepMRMD:0.767104148864746;iRNA_m5C:0.999536712222711 23991 chr18 20573449 20573449 1 + C G GBM 20573447 + 20573427 20573467 41 CCAAAGATTCCCCAGGGGAGCCCTGTTCACAGGAATGCATC CCAAAGATTCCCCAGGGGAGCCGTGTTCACAGGAATGCATC < 41bp 1 0.255794120706708 1 0.0921313166618347 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20573447 chr18:20573449 synonymous SNV . 0 23 hm5C_associated_SNPs_23124 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_23991 DeepMRMD:1;iRNA_m5C:0.999536712157815 23992 chr8 22037908 22037908 1 + C T GBM 22037894 + 22037874 22037914 41 CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCACAGGCAA CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCATAGGCAA < 41bp 1 0.102706427773966 1 0.197547316551208 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037894 chr8:22037908 nonsynonymous SNV 0.986 1 35 hm5C_associated_SNPs_23125 0 0 0 0 2 Endoplasmic reticulum 1 0.500231219161667 1 0.999537561676667 hm5C_site_23992 DeepMRMD:1;iRNA_m5C:0.999537561676667 23993 chr5 71492195 71492195 1 + G A GBM 71492181 + 71492161 71492201 41 GGCCAGTGGGGATGACCGAGCCGAAGAAGACATGGATGAGG GGCCAGTGGGGATGACCGAGCCGAAGAAGACATGAATGAGG < 41bp 1 0.431325930718494 1 0.419742405414581 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71492181 chr5:71492195 nonsynonymous SNV 0.976 1 35 hm5C_associated_SNPs_23126 0 0 1 0 0 Cytosol 1 0.500231644064724 1 0.999536711870552 hm5C_site_23993 DeepMRMD:1;iRNA_m5C:0.999536711870552 23994 chr2 216190036 216190036 1 + G A GBM 216190020 + 216190000 216190040 41 AGTGGCTTCTCCAGGTGTAACTGTTGAGGAGGCTGTGGAGC AGTGGCTTCTCCAGGTGTAACTGTTGAGGAGGCTGTAGAGC < 41bp 1 0.348903245851499 1 0.129114180803299 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216190020 chr2:216190036 synonymous SNV . 0 37 hm5C_associated_SNPs_23127 0 0 1 0 1 chromatin 1 0.500231643923024 1 0.999536712153953 hm5C_site_23994 DeepMRMD:1;iRNA_m5C:0.999536712153953 23995 chr22 24466765 24466765 1 + G A GBM 24466762 + 24466742 24466782 41 CTGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCA CTGTACTAGGACTCCTTGCTCCGACTGAAGGACTATCGGCA < 41bp 1 0.0755133228254924 1 0.743984818458557 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466762 chr22:24466765 synonymous SNV . 0 24 hm5C_associated_SNPs_23128 0 0 1 0 1 Cytosol 1 0.50023164406741 0.512030363082886 0.99953671186518 hm5C_site_23995 DeepMRMD:0.512030363082886;iRNA_m5C:0.99953671186518 23996 chr22 24466765 24466765 1 + G A GBM 24466763 + 24466743 24466783 41 TGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCAG TGTACTAGGACTCCTTGCTCCGACTGAAGGACTATCGGCAG < 41bp 1 0.28169324477542 1 0.29466450214386 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466763 chr22:24466765 synonymous SNV . 0 23 hm5C_associated_SNPs_23129 0 0 1 0 1 Cytosol 1 0.500231643934587 1 0.999536712130825 hm5C_site_23996 DeepMRMD:1;iRNA_m5C:0.999536712130825 23997 chr22 24466765 24466765 1 + G A GBM 24466766 + 24466746 24466786 41 ACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCAGTGT ACTAGGACTCCTTGCTCCGACTGAAGGACTATCGGCAGTGT < 41bp 1 0.545331934792319 1 0.42811793088913 experiment 0.909336130415361 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466766 chr22:24466765 synonymous SNV . 0 20 hm5C_associated_SNPs_23130 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_23997 DeepMRMD:1;iRNA_m5C:0.999536712157815 23998 chr19 41111402 41111402 1 + G A GBM 41111411 + 41111391 41111431 41 GGCCCTTGGGAGGAGGCGGACGCTGAGGCGGTGGCGCGGGC GGCCCTTGGGAAGAGGCGGACGCTGAGGCGGTGGCGCGGGC < 41bp 1 0.551930989527806 1 0.492002993822098 experiment 0.896138020944388 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41111411 chr19:41111402 synonymous SNV . 0 12 hm5C_associated_SNPs_23131 0 0 1 0 1 Cytosol 1 0.500231636344849 1 0.999536727310302 hm5C_site_23998 DeepMRMD:1;iRNA_m5C:0.999536727310302 23999 chr19 41084426 41084426 1 + C A GBM 41084423 + 41084403 41084443 41 TCTTCTTGTGGAAACGTCCTCTTCAATGGTTACCTGCCGCC TCTTCTTGTGGAAACGTCCTCTTAAATGGTTACCTGCCGCC < 41bp 1 0.434953567956631 1 0.583484768867493 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41084423 chr19:41084426 stopgain 1.000 3 24 hm5C_associated_SNPs_23132 0 0 1 0 1 Ribosome 1 0.500231643897773 0.833030462265014 0.999536712204455 hm5C_site_23999 DeepMRMD:0.833030462265014;iRNA_m5C:0.999536712204455 24000 chr6 20402625 20402625 1 + G C GBM 20402606 + 20402586 20402626 41 CCCCGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGG CCCCGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCCG < 41bp 1 0.415271027169564 1 0.715549349784851 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402606 chr6:20402625 synonymous SNV . 0 40 hm5C_associated_SNPs_23133 0 0 1 0 0 Cytosol 1 0.50023162983695 0.568901300430298 0.9995367403261 hm5C_site_24000 DeepMRMD:0.568901300430298;iRNA_m5C:0.9995367403261 24001 chr6 20402625 20402625 1 + G C GBM 20402609 + 20402589 20402629 41 CGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCG CGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCCGGCG < 41bp 1 0.4379644168755 1 0.69890558719635 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402609 chr6:20402625 synonymous SNV . 0 37 hm5C_associated_SNPs_23134 0 0 1 0 0 Cytosol 1 0.500231643921105 0.6021888256073 0.99953671215779 hm5C_site_24001 DeepMRMD:0.6021888256073;iRNA_m5C:0.99953671215779 24002 chr6 20402625 20402625 1 + G C GBM 20402610 + 20402590 20402630 41 GGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGC GGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCCGGCGC < 41bp 1 0.598006529933286 1 0.715354919433594 experiment 0.803986940133427 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402610 chr6:20402625 synonymous SNV . 0 36 hm5C_associated_SNPs_23135 0 0 1 0 0 Cytosol 1 0.500231643922781 0.569290161132812 0.999536712154438 hm5C_site_24002 DeepMRMD:0.569290161132812;iRNA_m5C:0.999536712154438 24003 chr6 20402625 20402625 1 + G C GBM 20402612 + 20402592 20402632 41 CTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGCGT CTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCCGGCGCGT < 41bp 1 0.63724608706754 1 0.343620866537094 experiment 0.725507825864919 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402612 chr6:20402625 synonymous SNV . 0 34 hm5C_associated_SNPs_23136 0 0 1 0 0 Cytosol 1 0.500231689853902 1 0.999536620292196 hm5C_site_24003 DeepMRMD:1;iRNA_m5C:0.999536620292196 24004 chr6 20402625 20402625 1 + G C GBM 20402615 + 20402595 20402635 41 CGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGCGTACA CGCCGCCGCCGCCGCCGCTGCCGCCGCCCCCGGCGCGTACA < 41bp 1 0.267220000692313 1 0.463896751403809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402615 chr6:20402625 synonymous SNV . 0 31 hm5C_associated_SNPs_23137 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24004 DeepMRMD:1;iRNA_m5C:0.999536712157815 24005 chr6 20402625 20402625 1 + G C GBM 20402618 + 20402598 20402638 41 CGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGCGTACATCC CGCCGCCGCCGCCGCTGCCGCCGCCCCCGGCGCGTACATCC < 41bp 1 0.270548990343976 1 0.70870977640152 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402618 chr6:20402625 synonymous SNV . 0 28 hm5C_associated_SNPs_23139 0 0 1 0 0 Cytosol 1 0.500231643921092 0.58258044719696 0.999536712157815 hm5C_site_24005 DeepMRMD:0.58258044719696;iRNA_m5C:0.999536712157815 24006 chr6 20402625 20402625 1 + G C GBM 20402619 + 20402599 20402639 41 GCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGCGTACATCCA GCCGCCGCCGCCGCTGCCGCCGCCCCCGGCGCGTACATCCA < 41bp 1 0.436423834779476 1 0.437420785427094 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402619 chr6:20402625 synonymous SNV . 0 27 hm5C_associated_SNPs_23140 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24006 DeepMRMD:1;iRNA_m5C:0.999536712157815 24007 chr16 67578997 67578997 1 + G A GBM 67578992 + 67578972 67579012 41 CAGTATGGTGCCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC CAGTATGGTGCCCGCCTCTCCCTGCACCAGCCAGGCTTGGC < 41bp 1 0.0804556514324442 1 0.264137327671051 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578992 chr16:67578997 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_23142 0 0 1 0 1 unknown 1 0.500231644157924 1 0.999536711684152 hm5C_site_24007 DeepMRMD:1;iRNA_m5C:0.999536711684152 24008 chr11 126143242 126143242 1 + C T GBM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCTGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.478002479910502 1 0.270557343959808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143242 synonymous SNV . 0 7 hm5C_associated_SNPs_23144 0 0 1 0 2 Ribosome 1 0.500231643921488 1 0.999536712157023 hm5C_site_24008 DeepMRMD:1;iRNA_m5C:0.999536712157023 24009 chr7 44806136 44806136 1 + G A GBM 44806140 + 44806120 44806160 41 CAAACCCTCCCCCAGCGTCCCGGCAGTCCTTGGGCCAAGCG CAAACCCTCCCCCAGCATCCCGGCAGTCCTTGGGCCAAGCG < 41bp 1 0.665007057842252 1 0.299267828464508 experiment 0.669985884315496 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806140 chr7:44806136 synonymous SNV . 0 17 hm5C_associated_SNPs_23146 0 0 1 0 0 Cytosol 1 0.500231643921076 1 0.999536712157848 hm5C_site_24009 DeepMRMD:1;iRNA_m5C:0.999536712157848 24010 chr19 24010412 24010412 1 + C A GBM 24010418 + 24010398 24010438 41 TGCGCTGTGTAACACAGATTCTCCTCTGCGCTATGTGGACA TGCGCTGTGTAACAAAGATTCTCCTCTGCGCTATGTGGACA < 41bp 1 0.512111387319981 1 0.100636541843414 experiment 0.975777225360039 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010418 chr19:24010412 nonsynonymous SNV 0.997 1 15 hm5C_associated_SNPs_23147 0 0 0 0 0 Cytosol 1 0.500231360871457 1 0.999537278257087 hm5C_site_24010 DeepMRMD:1;iRNA_m5C:0.999537278257087 24011 chr19 24010412 24010412 1 + C A GBM 24010423 + 24010403 24010443 41 TGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCC TGTGTAACAAAGATTCTCCTCTGCGCTATGTGGACATTGCC < 41bp 1 0.496761335239003 1 0.054644376039505 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010423 chr19:24010412 nonsynonymous SNV 0.997 1 10 hm5C_associated_SNPs_23148 0 0 0 0 0 Cytosol 1 0.500231650208511 1 0.999536699582978 hm5C_site_24011 DeepMRMD:1;iRNA_m5C:0.999536699582978 24012 chr2 216995664 216995664 1 + C T GBM 216995648 + 216995628 216995668 41 TCTCTAAAGTGGATGAGGAACAAATGAAATATAAATCGGAG TCTCTAAAGTGGATGAGGAACAAATGAAATATAAATTGGAG < 41bp 1 0.336832638998427 1 0.478262215852737 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216995648 chr2:216995664 nonsynonymous SNV 0.979 0 37 hm5C_associated_SNPs_23149 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24012 DeepMRMD:1;iRNA_m5C:0.999536712157815 24013 chr22 42276831 42276831 1 + C T GBM 42276812 + 42276792 42276832 41 CGCCTGGACCTGGCCTGCAGCCTCTCCTGGAACGTGATCCG CGCCTGGACCTGGCCTGCAGCCTCTCCTGGAACGTGATCTG < 41bp 1 0.0714799073538593 1 0.0488421022891998 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42276812 chr22:42276831 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_23150 0 0 1 0 0 Ribosome 1 0.500231643919826 1 0.999536712160348 hm5C_site_24013 DeepMRMD:1;iRNA_m5C:0.999536712160348 24014 chr2 220097297 220097297 1 + A G GBM 220097293 + 220097273 220097313 41 GACACTGGATCGGGAGAGGGCTACATTTGAGAAGTTGAGCC GACACTGGATCGGGAGAGGGCTACGTTTGAGAAGTTGAGCC < 41bp 1 0.654135758225371 1 0.541342735290527 experiment 0.691728483549257 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220097293 chr2:220097297 synonymous SNV . 0 25 hm5C_associated_SNPs_23151 0 0 1 0 1 chromatin 1 0.500231643921092 0.917314529418946 0.999536712157815 hm5C_site_24014 DeepMRMD:0.917314529418946;iRNA_m5C:0.999536712157815 24015 chr16 56970705 56970705 1 + C A GBM 56970702 + 56970682 56970722 41 GGAAGTTCTTCGGAACCTTTCTTCCCCTGGATGGGAAAACA GGAAGTTCTTCGGAACCTTTCTTACCCTGGATGGGAAAACA < 41bp 1 0.209181725537996 1 0.192314773797989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56970702 chr16:56970705 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_23152 0 0 1 0 1 Ribosome 1 0.5002319190284 1 0.999536161943199 hm5C_site_24015 DeepMRMD:1;iRNA_m5C:0.999536161943199 24016 chr21 45113183 45113183 1 + A C GBM 45113170 + 45113150 45113190 41 CCTCCACGGGGTGCTGAAGACCCCCACCAGCTCACCTGCCA CCTCCACGGGGTGCTGAAGACCCCCACCAGCTCCCCTGCCA < 41bp 1 0.340875565293387 1 0.110569953918457 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RRP1B ENSG00000160208 CDS Human protein_coding chr21:45113170 chr21:45113183 synonymous SNV . 0 34 hm5C_associated_SNPs_23153 0 0 1 0 0 Cytosol 1 0.500231643925163 1 0.999536712149675 hm5C_site_24016 DeepMRMD:1;iRNA_m5C:0.999536712149675 24017 chr1 24996658 24996658 1 + G A GBM 24996652 + 24996632 24996672 41 GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGT GTCTGTAAGAAGGGTCTCATCCTCCCAATCTGTCTCCGGGT < 41bp 1 0.185957194201404 1 0.049877256155014 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996652 chr1:24996658 nonsynonymous SNV 0.969 2 27 hm5C_associated_SNPs_23156 0 0 1 0 1 Cytosol 1 0.50023164392108 1 0.99953671215784 hm5C_site_24017 DeepMRMD:1;iRNA_m5C:0.99953671215784 24018 chr1 24996658 24996658 1 + G A GBM 24996673 + 24996653 24996693 41 CTCCCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA CTCCCAATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA < 41bp 1 0.558272767260607 1 0.0307576358318329 experiment 0.883454465478786 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996673 chr1:24996658 nonsynonymous SNV 0.969 2 6 hm5C_associated_SNPs_23158 0 0 1 0 1 Cytosol 1 0.50023164393869 1 0.99953671212262 hm5C_site_24018 DeepMRMD:1;iRNA_m5C:0.99953671212262 24019 chr1 24996658 24996658 1 + G A GBM 24996676 + 24996656 24996696 41 CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC CCAATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC < 41bp 1 0.628975568277123 1 0.30437907576561 experiment 0.742048863445754 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996676 chr1:24996658 nonsynonymous SNV 0.969 2 3 hm5C_associated_SNPs_23159 0 0 1 0 1 Cytosol 1 0.500231643921126 1 0.999536712157747 hm5C_site_24019 DeepMRMD:1;iRNA_m5C:0.999536712157747 24020 chr5 140741624 140741624 1 + G A GBM 140741612 + 140741592 140741632 41 TGCCTTGGGCGACAGGGACGCGGCCCGCCAGCGCCTGCTGG TGCCTTGGGCGACAGGGACGCGGCCCGCCAGCACCTGCTGG < 41bp 1 0.398631407938779 1 0.58606630563736 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741612 chr5:140741624 nonsynonymous SNV 0.993 2 33 hm5C_associated_SNPs_23160 0 0 0 0 0 exosome 1 0.500231643921092 0.82786738872528 0.999536712157815 hm5C_site_24020 DeepMRMD:0.82786738872528;iRNA_m5C:0.999536712157815 24021 chr1 29069444 29069444 1 + T C GBM 29069427 + 29069407 29069447 41 TCTGCTGTTGGTAGCGGGTCCATTACTAGTAACATCGTGGC TCTGCTGTTGGTAGCGGGTCCATTACTAGTAACATCGCGGC < 41bp 1 0.320758805033645 1 0.209482580423355 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069427 chr1:29069444 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_23162 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24021 DeepMRMD:1;iRNA_m5C:0.999536712157815 24022 chr14 97014175 97014175 1 + A G GBM 97014156 + 97014136 97014176 41 TATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGATAT TATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGATGT < 41bp 1 0.529182206424222 1 0.233920693397522 experiment 0.941635587151555 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97014156 chr14:97014175 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_23163 0 0 1 0 2 Ribosome 1 0.500228987277544 1 0.999542025444913 hm5C_site_24022 DeepMRMD:1;iRNA_m5C:0.999542025444913 24023 chr3 184648327 184648327 1 + G T GBM 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACAGTGCAGAGGAGAAGCAGTCTTTATGGCAGAAAGCA < 41bp 1 0.125388488312282 1 0.296919763088226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648327 nonsynonymous SNV 0.993 1 27 hm5C_associated_SNPs_23164 0 0 1 0 2 chromatin 1 0.500231644031151 1 0.999536711937698 hm5C_site_24023 DeepMRMD:1;iRNA_m5C:0.999536711937698 24024 chr11 35684861 35684861 1 + A C GBM 35684862 + 35684842 35684882 41 CCACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGG CCACGGCTCCCAGGCCTGGCCCCCGCCAGCTGACGGAGAGG < 41bp 1 0.380531824455338 1 0.484659999608994 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684862 chr11:35684861 nonsynonymous SNV 0.001 0 20 hm5C_associated_SNPs_23165 0 0 1 0 0 Ribosome 1 0.50023164392089 1 0.99953671215822 hm5C_site_24024 DeepMRMD:1;iRNA_m5C:0.99953671215822 24025 chr11 35684861 35684861 1 + A C GBM 35684863 + 35684843 35684883 41 CACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGGG CACGGCTCCCAGGCCTGGCCCCCGCCAGCTGACGGAGAGGG < 41bp 1 0.190404390540697 1 0.248777478933334 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684863 chr11:35684861 nonsynonymous SNV 0.001 0 19 hm5C_associated_SNPs_23166 0 0 1 0 0 Ribosome 1 0.50023164394442 1 0.99953671211116 hm5C_site_24025 DeepMRMD:1;iRNA_m5C:0.99953671211116 24026 chr11 35684861 35684861 1 + A C GBM 35684864 + 35684844 35684884 41 ACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGGGG ACGGCTCCCAGGCCTGGCCCCCGCCAGCTGACGGAGAGGGG < 41bp 1 0.182352697205746 1 0.318183481693268 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684864 chr11:35684861 nonsynonymous SNV 0.001 0 18 hm5C_associated_SNPs_23167 0 0 1 0 0 Ribosome 1 0.500231644045727 1 0.999536711908546 hm5C_site_24026 DeepMRMD:1;iRNA_m5C:0.999536711908546 24027 chr10 14896134 14896134 1 + C A GBM 14896127 + 14896107 14896147 41 CTATGTTTTTAATTTAGATCCTTCAAACATGATGTGAGAGG CTATGTTTTTAATTTAGATCCTTCAAAAATGATGTGAGAGG < 41bp 1 0.173579707264252 1 0.415853708982468 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSPA14 ENSG00000187522 CDS Human protein_coding chr10:14896127 chr10:14896134 nonsynonymous SNV 0.974 2 28 hm5C_associated_SNPs_23169 0 0 1 0 1 Cytosol 1 0.500231643921847 1 0.999536712156306 hm5C_site_24027 DeepMRMD:1;iRNA_m5C:0.999536712156306 24028 chr11 57427181 57427181 1 + G A GBM 57427163 + 57427143 57427183 41 TTTCACTTGGCATGGCTGTTCTGTGCAACTGAGCGGCCGCA TTTCACTTGGCATGGCTGTTCTGTGCAACTGAGCGGCCACA < 41bp 1 0.564679557098707 1 0.234447926282883 experiment 0.870640885802586 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLP1 ENSG00000172409 CDS Human protein_coding chr11:57427163 chr11:57427181 nonsynonymous SNV 0.937 2 39 hm5C_associated_SNPs_23170 0 0 1 0 0 Cytosol 1 0.499474552131527 1 1 hm5C_site_24028 DeepMRMD:1;iRNA_m5C:1 24029 chr15 85326217 85326217 1 + C A GBM 85326199 + 85326179 85326219 41 ACACAATGGATTCCGGGGCTCAGATCTGCCTCCAGATCCCC ACACAATGGATTCCGGGGCTCAGATCTGCCTCCAGATCACC < 41bp 1 0.269279119423396 1 0.103686600923538 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF592 ENSG00000166716 CDS Human protein_coding chr15:85326199 chr15:85326217 nonsynonymous SNV 0.924 1 39 hm5C_associated_SNPs_23171 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24029 DeepMRMD:1;iRNA_m5C:0.999536712157815 24030 chr16 3339529 3339529 1 + G A GBM 3339545 + 3339525 3339565 41 GGTCGCAAGGGGATTGGGCGCCTCCCCCAGAGGGTGGAATG GGTCACAAGGGGATTGGGCGCCTCCCCCAGAGGGTGGAATG < 41bp 1 0.0730793603091927 1 0.0773998498916626 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3339545 chr16:3339529 nonsynonymous SNV 0.003 0 5 hm5C_associated_SNPs_23172 0 0 1 0 0 Cytosol 1 0.500231651070442 1 0.999536697859116 hm5C_site_24030 DeepMRMD:1;iRNA_m5C:0.999536697859116 24031 chr16 3339529 3339529 1 + G A GBM 3339549 + 3339529 3339569 41 GCAAGGGGATTGGGCGCCTCCCCCAGAGGGTGGAATGGAGC ACAAGGGGATTGGGCGCCTCCCCCAGAGGGTGGAATGGAGC < 41bp 1 0.570942442171355 1 0.469867497682571 experiment 0.858115115657291 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3339549 chr16:3339529 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_23173 0 0 1 0 0 Cytosol 1 0.500231643996825 1 0.999536712006351 hm5C_site_24031 DeepMRMD:1;iRNA_m5C:0.999536712006351 24032 chr7 33014896 33014896 1 + C A GBM 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCCCCAGAGTTGCCCTCG < 41bp 1 0.533546415641378 1 0.789648473262787 experiment 0.932907168717244 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014896 nonsynonymous SNV 0.940 0 29 hm5C_associated_SNPs_23174 0 0 0 0 1 Ribosome 1 0.500230980219205 0.420703053474426 0.99953803956159 hm5C_site_24032 DeepMRMD:0.420703053474426;iRNA_m5C:0.99953803956159 24033 chr7 33014896 33014896 1 + C A GBM 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCCCCAGAGTTGCCCTCGGACC < 41bp 1 0.36002970797244 1 0.264664471149445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014896 nonsynonymous SNV 0.940 0 25 hm5C_associated_SNPs_23175 0 0 0 0 1 Ribosome 1 0.500231643921096 1 0.999536712157809 hm5C_site_24033 DeepMRMD:1;iRNA_m5C:0.999536712157809 24034 chr19 18961017 18961017 1 + G A GBM 18961004 + 18960984 18961024 41 TGTCGCAACGTCTTCCTCCTCGGCTTCATCCCGGCCAAAGC TGTCGCAACGTCTTCCTCCTCGGCTTCATCCCGACCAAAGC < 41bp 1 0.562590416279872 1 0.817958235740662 experiment 0.874819167440257 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18961004 chr19:18961017 nonsynonymous SNV 0.848 4 34 hm5C_associated_SNPs_23176 0 0 1 0 1 Nucleus 1 0.500231635067639 0.364083528518676 0.999536729864721 hm5C_site_24034 DeepMRMD:0.364083528518676;iRNA_m5C:0.999536729864721 24035 chr1 171519332 171519332 1 + C T GBM 171519315 + 171519295 171519335 41 TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTT TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAATGTT < 41bp 1 0.076175944828442 1 0.740661382675171 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171519315 chr1:171519332 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_23177 0 0 1 0 1 Cytosol 1 0.500230833866887 0.518677234649658 0.999538332266226 hm5C_site_24035 DeepMRMD:0.518677234649658;iRNA_m5C:0.999538332266226 24036 chr2 204259426 204259426 1 + G A GBM 204259431 + 204259411 204259451 41 TTCTTTTTGTAGGCGGCACTCCCCCTATCGCACACTGGAGC TTCTTTTTGTAGGCGACACTCCCCCTATCGCACACTGGAGC < 41bp 1 0.29830983675702 1 0.171510696411133 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204259431 chr2:204259426 synonymous SNV . 0 16 hm5C_associated_SNPs_23178 0 0 1 0 0 Cytosol 1 0.500231628193549 1 0.999536743612902 hm5C_site_24036 DeepMRMD:1;iRNA_m5C:0.999536743612902 24037 chr2 204259426 204259426 1 + G A GBM 204259435 + 204259415 204259455 41 TTTTGTAGGCGGCACTCCCCCTATCGCACACTGGAGCCAGT TTTTGTAGGCGACACTCCCCCTATCGCACACTGGAGCCAGT < 41bp 1 0.194139252014839 1 0.187280416488647 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204259435 chr2:204259426 synonymous SNV . 0 12 hm5C_associated_SNPs_23179 0 0 1 0 0 Cytosol 1 0.500231643894048 1 0.999536712211905 hm5C_site_24037 DeepMRMD:1;iRNA_m5C:0.999536712211905 24038 chr19 4950641 4950641 1 + C G GBM 4950627 + 4950607 4950647 41 CTGACTCTCCCTGCAGGGCGCTGGCTCTCAACTGCTTTGCT CTGACTCTCCCTGCAGGGCGCTGGCTCTCAACTGGTTTGCT < 41bp 1 0.193096081858307 1 0.073163777589798 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950627 chr19:4950641 . 0.447 3 35 hm5C_associated_SNPs_23180 0 0 0 0 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_24038 DeepMRMD:1;iRNA_m5C:0.999536712157818 24039 chr19 4950641 4950641 1 + C G GBM 4950631 + 4950611 4950651 41 CTCTCCCTGCAGGGCGCTGGCTCTCAACTGCTTTGCTCCCA CTCTCCCTGCAGGGCGCTGGCTCTCAACTGGTTTGCTCCCA < 41bp 1 0.173753322040629 1 0.180054008960724 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950631 chr19:4950641 . 0.447 3 31 hm5C_associated_SNPs_23181 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24039 DeepMRMD:1;iRNA_m5C:0.999536712157815 24040 chr6 133137703 133137703 1 + G T GBM 133137684 + 133137664 133137704 41 GAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGT GAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGTT < 41bp 1 0.483585896712073 1 0.421117931604385 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 splicing Human protein_coding chr6:133137684 chr6:133137703 . 1.000 0 40 hm5C_associated_SNPs_23182 0 0 1 0 0 Cytosol 1 0.50023164391999 1 0.99953671216002 hm5C_site_24040 DeepMRMD:1;iRNA_m5C:0.99953671216002 24041 chr6 133137703 133137703 1 + G T GBM 133137694 + 133137674 133137714 41 GTGCTGAACACCAAATCAACCTAATTAAGGTAAGGCTGCTA GTGCTGAACACCAAATCAACCTAATTAAGTTAAGGCTGCTA < 41bp 1 0.389952102801867 1 0.0517831742763519 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 splicing Human protein_coding chr6:133137694 chr6:133137703 . 1.000 0 30 hm5C_associated_SNPs_23183 0 0 1 0 0 Cytosol 1 0.500231643077389 1 0.999536713845221 hm5C_site_24041 DeepMRMD:1;iRNA_m5C:0.999536713845221 24042 chr14 23239012 23239012 1 + C T GBM 23239030 + 23239010 23239050 41 TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC TGTCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC < 41bp 1 0.342896175163161 1 0.0425302088260651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239030 chr14:23239012 nonsynonymous SNV 0.988 3 3 hm5C_associated_SNPs_23184 0 0 1 0 1 Cytosol 1 0.500231646461701 1 0.999536707076598 hm5C_site_24042 DeepMRMD:1;iRNA_m5C:0.999536707076598 24043 chr2 167056293 167056293 1 + C T GBM 167056285 - 167056265 167056305 41 CCAGGATTGGCCGAATCCTACGTCTAGTCAAAGGAGCAAAG CCAGGATTGGCCAAATCCTACGTCTAGTCAAAGGAGCAAAG < 41bp 1 0.132637491731681 1 0.0363812744617462 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167056285 chr2:167056293 nonsynonymous SNV 0.768 5 13 hm5C_associated_SNPs_23185 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24043 DeepMRMD:1;iRNA_m5C:0.999536712157815 24044 chr22 20079086 20079086 1 + G A GBM 20079093 + 20079073 20079113 41 GCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA GCAGGCGGAGTCCAAGAGGCCCATCTTGCCAGCCAATCAGA < 41bp 1 0.0479973878963221 1 0.062752366065979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20079093 chr22:20079086 nonsynonymous SNV 0.958 1 14 hm5C_associated_SNPs_23186 0 0 1 0 1 Nucleus 1 0.500231632097439 1 0.999536735805122 hm5C_site_24044 DeepMRMD:1;iRNA_m5C:0.999536735805122 24045 chr3 52237939 52237939 1 + C T GBM 52237938 + 52237918 52237958 41 TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAAC TGAAAACCGATGGAGGGGATCTCAGTGGACTGCTGAAGAAC < 41bp 1 0.655017188005016 1 0.300185084342957 experiment 0.689965623989968 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52237938 chr3:52237939 nonsynonymous SNV 0.204 1 22 hm5C_associated_SNPs_23187 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24045 DeepMRMD:1;iRNA_m5C:0.999536712157815 24046 chr16 56867244 56867244 1 + A G GBM 56867224 + 56867204 56867244 41 GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCGCTGCCA GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCGCTGCCG < 41bp 1 0.49631908450105 1 0.12014964222908 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56867224 chr16:56867244 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_23188 0 0 1 0 1 Nucleus 1 0.500231643988166 1 0.999536712023668 hm5C_site_24046 DeepMRMD:1;iRNA_m5C:0.999536712023668 24047 chr12 6618912 6618912 1 + C T GBM 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTCGAGCTCAGGGGTCCCTGGCTATGCTGCAGCACTT < 41bp 1 0.129104836859806 1 0.101226806640625 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618912 nonsynonymous SNV 0.958 0 19 hm5C_associated_SNPs_23189 0 0 1 0 2 Nucleus 1 0.500231643920189 1 0.999536712159621 hm5C_site_24047 DeepMRMD:1;iRNA_m5C:0.999536712159621 24048 chr7 140379047 140379047 1 + C T GBM 140379056 + 140379036 140379076 41 CCTCTGCGCCCCTTTGTCACCAGAGAAGTCTTGGTGGAAAC CCTCTGCGCCCTTTTGTCACCAGAGAAGTCTTGGTGGAAAC < 41bp 1 0.558324115567962 1 0.685140252113342 experiment 0.883351768864075 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140379056 chr7:140379047 synonymous SNV . 0 12 hm5C_associated_SNPs_23190 0 0 1 0 2 Ribosome 1 0.500231643776829 0.629719495773316 0.999536712446341 hm5C_site_24048 DeepMRMD:0.629719495773316;iRNA_m5C:0.999536712446341 24049 chr12 110474083 110474083 1 + T C GBM 110474069 + 110474049 110474089 41 ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCGAAT ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCCTCGAAT < 41bp 1 0.0362559954481559 1 0.0379354953765869 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110474069 chr12:110474083 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_23191 0 0 1 0 2 chromatin 1 0.500231643888713 1 0.999536712222574 hm5C_site_24049 DeepMRMD:1;iRNA_m5C:0.999536712222574 24050 chr7 135312778 135312778 1 + C T GBM 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCGTCAGATTCTCCTC < 41bp 1 0.486846184061189 1 0.0886625647544861 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312778 synonymous SNV . 0 29 hm5C_associated_SNPs_23192 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24050 DeepMRMD:1;iRNA_m5C:0.999536712157815 24051 chrX 129173191 129173191 1 + G A GBM 129173210 + 129173190 129173230 41 GGCTACCTACTCGGGTCAGACAGCCATGAAGCTGGCCAGCA GACTACCTACTCGGGTCAGACAGCCATGAAGCTGGCCAGCA < 41bp 1 0.356018550459258 1 0.567987680435181 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129173210 chrX:129173191 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_23193 0 0 1 0 2 Cytosol 1 0.500231644653529 0.864024639129638 0.999536710692943 hm5C_site_24051 DeepMRMD:0.864024639129638;iRNA_m5C:0.999536710692943 24052 chr15 66797685 66797685 1 + G T GBM 66797669 - 66797649 66797689 41 GCCGCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCGGA GCCGATCCCACATCCCGCCCCAATGTGAGAGCGGTACCGGA < 41bp 1 0.423058206661415 1 0.136068284511566 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66797669 chr15:66797685 nonsynonymous SNV 0.001 0 5 hm5C_associated_SNPs_23194 0 0 0 0 1 Ribosome 1 0.500231643949787 1 0.999536712100426 hm5C_site_24052 DeepMRMD:1;iRNA_m5C:0.999536712100426 24053 chr15 66797685 66797685 1 + G T GBM 66797670 - 66797650 66797690 41 AGCCGCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCGG AGCCGATCCCACATCCCGCCCCAATGTGAGAGCGGTACCGG < 41bp 1 0.25741980361571 1 0.102843403816223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66797670 chr15:66797685 nonsynonymous SNV 0.001 0 6 hm5C_associated_SNPs_23195 0 0 0 0 1 Ribosome 1 0.500231643921099 1 0.999536712157801 hm5C_site_24053 DeepMRMD:1;iRNA_m5C:0.999536712157801 24054 chr15 66797685 66797685 1 + G T GBM 66797671 - 66797651 66797691 41 CAGCCGCTCCCACATCCCGCCCCAATGTGAGAGCGGTACCG CAGCCGATCCCACATCCCGCCCCAATGTGAGAGCGGTACCG < 41bp 1 0.393829640226478 1 0.204090565443039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66797671 chr15:66797685 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_23196 0 0 0 0 1 Ribosome 1 0.500231643923542 1 0.999536712152917 hm5C_site_24054 DeepMRMD:1;iRNA_m5C:0.999536712152917 24055 chr16 81077296 81077296 1 + A G GBM 81077278 + 81077258 81077298 41 AGTGAACTTTGGTAAAAGTCCATCTAATCCTTTACAAGAAC AGTGAACTTTGGTAAAAGTCCATCTAATCCTTTACAAGGAC < 41bp 1 0.170411599106681 1 0.0863426029682159 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81077278 chr16:81077296 nonsynonymous SNV 0.027 0 39 hm5C_associated_SNPs_23197 0 0 1 0 0 Cytosol 1 0.500231653971813 1 0.999536692056375 hm5C_site_24055 DeepMRMD:1;iRNA_m5C:0.999536692056375 24056 chr11 10774300 10774300 1 + A G GBM 10774299 + 10774279 10774319 41 CAGGAACACACACAACTGCACATATGGATTGCTTTGGCGGT CAGGAACACACACAACTGCACGTATGGATTGCTTTGGCGGT < 41bp 1 0.0848447928180342 1 0.0312488377094269 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774299 chr11:10774300 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_23198 0 0 1 0 2 Cytosol 1 0.50023164997863 1 0.99953670004274 hm5C_site_24056 DeepMRMD:1;iRNA_m5C:0.99953670004274 24057 chr11 10774300 10774300 1 + A G GBM 10774310 + 10774290 10774330 41 ACAACTGCACATATGGATTGCTTTGGCGGTCAGTATTCATG ACAACTGCACGTATGGATTGCTTTGGCGGTCAGTATTCATG < 41bp 1 0.0852487711694153 1 0.0105448067188263 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774310 chr11:10774300 nonsynonymous SNV 0.998 1 11 hm5C_associated_SNPs_23199 0 0 1 0 2 Cytosol 1 0.500231643921344 1 0.999536712157312 hm5C_site_24057 DeepMRMD:1;iRNA_m5C:0.999536712157312 24058 chr2 10560060 10560060 1 + C T GBM 10560051 + 10560031 10560071 41 AAGATCTACGCCAACTTCTTCCCCTACGGCGACGCTTCCAA AAGATCTACGCCAACTTCTTCCCCTACGGTGACGCTTCCAA < 41bp 1 0.0861390603424803 1 0.28806072473526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10560051 chr2:10560060 synonymous SNV . 0 30 hm5C_associated_SNPs_23200 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24058 DeepMRMD:1;iRNA_m5C:0.999536712157815 24059 chr9 140137126 140137126 1 + C T GBM 140137116 + 140137096 140137136 41 GACTGGGTCTGGGATGGGTACCCTCCTCATCAGCAAGATCC GACTGGGTCTGGGATGGGTACCCTCCTCATTAGCAAGATCC < 41bp 1 0.0960448265478274 1 0.0263412594795227 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140137116 chr9:140137126 synonymous SNV . 0 31 hm5C_associated_SNPs_23201 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24059 DeepMRMD:1;iRNA_m5C:0.999536712157815 24060 chr5 177547367 177547367 1 + C T GBM 177547350 + 177547330 177547370 41 GGCCCCGGGCCAGCCAGGCCCGGGCACAGCTGCTGCACGCC GGCCCCGGGCCAGCCAGGCCCGGGCACAGCTGCTGCATGCC < 41bp 1 0.691384495581388 1 0.547468841075897 experiment 0.617231008837223 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177547350 chr5:177547367 synonymous SNV . 0 38 hm5C_associated_SNPs_23204 0 0 0 0 0 chromatin 1 0.500231643921111 0.905062317848206 0.999536712157778 hm5C_site_24060 DeepMRMD:0.905062317848206;iRNA_m5C:0.999536712157778 24061 chr2 242683167 242683167 1 + C T GBM 242683180 + 242683160 242683200 41 CAACCAACGCTGGAGGCCTGCGGTTTCTTCGATATGGCTCA CAACCAATGCTGGAGGCCTGCGGTTTCTTCGATATGGCTCA < 41bp 1 0.381355097269896 1 0.504148662090302 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242683180 chr2:242683167 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_23205 0 0 1 0 1 Ribosome 1 0.500231644044131 0.991702675819396 0.999536711911739 hm5C_site_24061 DeepMRMD:0.991702675819396;iRNA_m5C:0.999536711911739 24062 chr6 133844286 133844286 1 + T C GBM 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGGTGCTTTCCCCACTGAGAATATTTACAGTG < 41bp 1 0.19448322376491 1 0.422466069459915 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844286 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_23206 0 0 0 0 2 Cytosol 1 0.500231643921101 1 0.999536712157797 hm5C_site_24062 DeepMRMD:1;iRNA_m5C:0.999536712157797 24063 chr6 133844286 133844286 1 + T C GBM 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGGTGCTTTCCCCACTGAGAATATTTACAGTGC < 41bp 1 0.233419339639509 1 0.316433101892471 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844286 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_23207 0 0 0 0 2 Cytosol 1 0.500231643924652 1 0.999536712150696 hm5C_site_24063 DeepMRMD:1;iRNA_m5C:0.999536712150696 24064 chr7 157041143 157041143 1 + G A GBM 157041160 + 157041140 157041180 41 GTGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA GTGAACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA < 41bp 1 0.322942011912317 1 0.547413289546967 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157041160 chr7:157041143 nonsynonymous SNV 0.976 2 4 hm5C_associated_SNPs_23208 0 0 1 0 1 Ribosome 1 0.500231643921092 0.905173420906066 0.999536712157815 hm5C_site_24064 DeepMRMD:0.905173420906066;iRNA_m5C:0.999536712157815 24065 chr6 33411312 33411312 1 + C T GBM 33411295 + 33411275 33411315 41 TAGCAAGAGTGAGGACCTCTCTTCCGGGGTCCCCAAGCCCC TAGCAAGAGTGAGGACCTCTCTTCCGGGGTCCCCAAGTCCC < 41bp 1 0.172242973765783 1 0.202210634946823 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33411295 chr6:33411312 nonsynonymous SNV 0.997 0 38 hm5C_associated_SNPs_23209 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24065 DeepMRMD:1;iRNA_m5C:0.999536712157815 24066 chr14 23070613 23070613 1 + C T GBM 23070600 + 23070580 23070620 41 GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGCCCCACTTCC GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGCCTCACTTCC < 41bp 1 0.297664485867172 1 0.156561553478241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23070600 chr14:23070613 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_23211 0 0 1 0 1 cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_24066 DeepMRMD:1;iRNA_m5C:0.999536712157814 24067 chr19 54621969 54621969 1 + T C GBM 54621957 + 54621937 54621977 41 TTCTCCTTTCCTACAGTTTGCTGAGATTATGATGAAGATTG TTCTCCTTTCCTACAGTTTGCTGAGATTATGACGAAGATTG < 41bp 1 0.275665929080682 1 0.0819819271564484 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54621957 chr19:54621969 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_23212 0 0 1 0 2 Cytosol 1 0.500231644002762 1 0.999536711994476 hm5C_site_24067 DeepMRMD:1;iRNA_m5C:0.999536711994476 24068 chr3 4774885 4774885 1 + C T GBM 4774884 + 4774864 4774904 41 CCCACTGTCAGCAGGAGGACCCGGCAAGCCCGGGGGAGGAG CCCACTGTCAGCAGGAGGACCTGGCAAGCCCGGGGGAGGAG < 41bp 1 0.281888167372067 1 0.277482539415359 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4774884 chr3:4774885 synonymous SNV . 0 22 hm5C_associated_SNPs_23213 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644016428 1 0.999536711967144 hm5C_site_24068 DeepMRMD:1;iRNA_m5C:0.999536711967144 24069 chr3 130672707 130672707 1 + A G GBM 130672711 + 130672691 130672731 41 CAGCTTGACAGGTGAGACAACGCCTTGTTCTAAGGTGACAG CAGCTTGACAGGTGAGGCAACGCCTTGTTCTAAGGTGACAG < 41bp 1 0.628484517287792 1 0.0854204595088959 experiment 0.743030965424416 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130672711 chr3:130672707 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_23214 0 0 1 0 1 Ribosome 1 0.500230803296916 1 0.999538393406168 hm5C_site_24069 DeepMRMD:1;iRNA_m5C:0.999538393406168 24070 chr6 44219879 44219879 1 + G A GBM 44219869 + 44219849 44219889 41 AAGGAATTTGATGGGAAGAGCCTGGTCTCAGTTACCAAGGA AAGGAATTTGATGGGAAGAGCCTGGTCTCAATTACCAAGGA < 41bp 1 0.330101404749577 1 0.156937092542648 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219869 chr6:44219879 nonsynonymous SNV 0.995 0 31 hm5C_associated_SNPs_23215 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24070 DeepMRMD:1;iRNA_m5C:0.999536712157815 24071 chr6 44219879 44219879 1 + G A GBM 44219877 + 44219857 44219897 41 TGATGGGAAGAGCCTGGTCTCAGTTACCAAGGAGGGTCTGG TGATGGGAAGAGCCTGGTCTCAATTACCAAGGAGGGTCTGG < 41bp 1 0.31179791480857 1 0.2497738301754 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219877 chr6:44219879 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_23217 0 0 1 0 0 Nucleus 1 0.500231643930888 1 0.999536712138224 hm5C_site_24071 DeepMRMD:1;iRNA_m5C:0.999536712138224 24072 chr6 44219879 44219879 1 + G A GBM 44219883 + 44219863 44219903 41 GAAGAGCCTGGTCTCAGTTACCAAGGAGGGTCTGGAGCTGC GAAGAGCCTGGTCTCAATTACCAAGGAGGGTCTGGAGCTGC < 41bp 1 0.382554462473933 1 0.495126187801361 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219883 chr6:44219879 nonsynonymous SNV 0.995 0 17 hm5C_associated_SNPs_23218 0 0 1 0 0 Nucleus 1 0.500231658449457 1 0.999536683101087 hm5C_site_24072 DeepMRMD:1;iRNA_m5C:0.999536683101087 24073 chr11 65271931 65271931 1 + C A GBM 65271929 + 65271909 65271949 41 GTATGATTAAAAGTTGTGTTCCCCAATGCTTGGAGTAGTGA GTATGATTAAAAGTTGTGTTCCACAATGCTTGGAGTAGTGA < 41bp 1 0.321664225560001 1 0.0508936643600464 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271929 chr11:65271931 . . 0 23 hm5C_associated_SNPs_23219 0 0 1 0 0 unknown 1 0.500234332153246 1 0.999531335693507 hm5C_site_24073 DeepMRMD:1;iRNA_m5C:0.999531335693507 24074 chrX 49853380 49853380 1 + G A GBM 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CCTCTTTATCCCTAACATGGCTGTTGGTGCTATAGCAGGTC < 41bp 1 0.159059135035015 1 0.0998833179473877 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853380 nonsynonymous SNV 1.000 5 15 hm5C_associated_SNPs_23220 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24074 DeepMRMD:1;iRNA_m5C:0.999536712157815 24075 chr6 111288893 111288893 1 + A G GBM 111288899 + 111288879 111288919 41 GAGTTGTGAACAGGAGAAACCAATGCACTTGGAAATAGAAG GAGTTGTGAACAGGGGAAACCAATGCACTTGGAAATAGAAG < 41bp 1 0.249520289971267 1 0.434838533401489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C6 ENSG00000155115 CDS Human protein_coding chr6:111288899 chr6:111288893 nonsynonymous SNV 0.116 0 15 hm5C_associated_SNPs_23221 0 0 1 0 0 Ribosome 1 0.500231644223719 1 0.999536711552562 hm5C_site_24075 DeepMRMD:1;iRNA_m5C:0.999536711552562 24076 chr8 124787442 124787442 1 + C A GBM 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGACGAGATCATCTCATGCT < 41bp 1 0.352883039349034 1 0.364339470863342 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787442 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_23222 0 0 0 0 2 Ribosome 1 0.500231629674588 1 0.999536740650825 hm5C_site_24076 DeepMRMD:1;iRNA_m5C:0.999536740650825 24077 chr11 61915978 61915978 1 + G T GBM 61915991 + 61915971 61916011 41 CCCTGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAG CCCTGCGTCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAG < 41bp 1 0.223336808380967 1 0.219943106174469 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915991 chr11:61915978 synonymous SNV . 0 8 hm5C_associated_SNPs_23224 0 0 1 0 1 chromatin 1 0.500231643906257 1 0.999536712187486 hm5C_site_24077 DeepMRMD:1;iRNA_m5C:0.999536712187486 24078 chr11 61915978 61915978 1 + G T GBM 61915994 + 61915974 61916014 41 TGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAG TGCGTCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAG < 41bp 1 0.553727901216472 1 0.65637594461441 experiment 0.892544197567055 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915994 chr11:61915978 synonymous SNV . 0 5 hm5C_associated_SNPs_23225 0 0 1 0 1 chromatin 1 0.500231643395176 0.68724811077118 0.999536713209649 hm5C_site_24078 DeepMRMD:0.68724811077118;iRNA_m5C:0.999536713209649 24079 chr11 61915978 61915978 1 + G T GBM 61915997 + 61915977 61916017 41 GGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAGAAG GTCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAGAAG < 41bp 1 0.37117391248368 1 0.4947569668293 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61915997 chr11:61915978 synonymous SNV . 0 2 hm5C_associated_SNPs_23226 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24079 DeepMRMD:1;iRNA_m5C:0.999536712157815 24080 chr2 232576621 232576621 1 + G T HNSC 232576618 + 232576598 232576638 41 AGAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTA AGAATGAGGAAAATGGGGAGCAGTAGGCTGACAATGAGGTA < 41bp 1 0.435628536724046 1 0.402423739433289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576618 chr2:232576621 stopgain 0.999 0 24 hm5C_associated_SNPs_23228 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24080 DeepMRMD:1;iRNA_m5C:0.999536712157815 24081 chr2 232576621 232576621 1 + G T HNSC 232576625 + 232576605 232576645 41 GGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAG GGAAAATGGGGAGCAGTAGGCTGACAATGAGGTAGACGAAG < 41bp 1 0.397026811274273 1 0.277562320232391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576625 chr2:232576621 stopgain 0.999 0 17 hm5C_associated_SNPs_23229 0 0 1 0 3 Ribosome 1 0.500231643921058 1 0.999536712157884 hm5C_site_24081 DeepMRMD:1;iRNA_m5C:0.999536712157884 24082 chr2 232576621 232576621 1 + G T HNSC 232576641 + 232576621 232576661 41 GAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG TAGGCTGACAATGAGGTAGACGAAGAAGAGGAAGAAGGTGG < 41bp 1 0.48602990541228 1 0.34844845533371 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576641 chr2:232576621 stopgain 0.999 0 1 hm5C_associated_SNPs_23230 0 0 1 0 3 Ribosome 1 0.50023164358627 1 0.999536712827459 hm5C_site_24082 DeepMRMD:1;iRNA_m5C:0.999536712827459 24083 chr8 21960135 21960135 1 + G A HNSC 21960138 + 21960118 21960158 41 CGGGCCAGGCTCCTGGGGAGCAGTGAGTACCAAGGGTGCCA CGGGCCAGGCTCCTGGGAAGCAGTGAGTACCAAGGGTGCCA < 41bp 1 0.45905870109401 1 0.742861926555634 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21960138 chr8:21960135 nonsynonymous SNV 0.999 0 18 hm5C_associated_SNPs_23231 0 0 1 0 2 chromatin 1 0.500231643920887 0.514276146888732 0.999536712158225 hm5C_site_24083 DeepMRMD:0.514276146888732;iRNA_m5C:0.999536712158225 24084 chr12 112590581 112590581 1 + G A HNSC 112590564 + 112590544 112590584 41 GCCTTCCAAGCAACAGGGAGCTGGGGATGCAGAAGAGGAAG GCCTTCCAAGCAACAGGGAGCTGGGGATGCAGAAGAGAAAG < 41bp 1 0.684524822584203 1 0.503264486789703 experiment 0.630950354831595 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112590564 chr12:112590581 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_23232 0 0 1 0 1 Cytosol 1 0.500231633225256 0.993471026420594 0.999536733549489 hm5C_site_24084 DeepMRMD:0.993471026420594;iRNA_m5C:0.999536733549489 24085 chr12 12940238 12940238 1 + G A HNSC 12940241 + 12940221 12940261 41 CAGGACCAGATGCGAGAGATCCTGAGCTGCCTCGAGTTTTT CAGGACCAGATGCGAGAAATCCTGAGCTGCCTCGAGTTTTT < 41bp 1 0.595126540937566 1 0.133406460285187 experiment 0.809746918124868 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APOLD1 ENSG00000178878 CDS Human protein_coding chr12:12940241 chr12:12940238 synonymous SNV . 0 18 hm5C_associated_SNPs_23233 0 0 0 0 0 Cytosol 1 0.500231643924347 1 0.999536712151305 hm5C_site_24085 DeepMRMD:1;iRNA_m5C:0.999536712151305 24086 chr11 605232 605232 1 + G A HNSC 605217 + 605197 605237 41 GTGTTGAAGCCAGTGGAGCCCTCTTTGGGGCTGCTGAGAGC GTGTTGAAGCCAGTGGAGCCCTCTTTGGGGCTGCTAAGAGC < 41bp 1 0.370452485249657 1 0.584210991859436 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:605217 chr11:605232 synonymous SNV . 0 36 hm5C_associated_SNPs_23234 0 0 1 0 1 Nucleus 1 0.500231635039311 0.831578016281128 0.999536729921378 hm5C_site_24086 DeepMRMD:0.831578016281128;iRNA_m5C:0.999536729921378 24087 chr7 142459656 142459656 1 + A G HNSC 142459658 + 142459638 142459678 41 AGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAATGA AGACTGGGAGAGCACAACGTCGAAGTCCTGGAGGGGAATGA < 41bp 1 0.697455264592244 1 0.352843046188354 experiment 0.605089470815512 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459658 chr7:142459656 nonsynonymous SNV 0.727 2 19 hm5C_associated_SNPs_23237 0 0 0 0 1 Cytosol 1 0.500231643880441 1 0.999536712239119 hm5C_site_24087 DeepMRMD:1;iRNA_m5C:0.999536712239119 24088 chr7 142459656 142459656 1 + A G HNSC 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACGTCGAAGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.583901006577735 1 0.543307542800903 experiment 0.83219798684453 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459656 nonsynonymous SNV 0.727 2 13 hm5C_associated_SNPs_23238 0 0 0 0 1 Cytosol 1 0.500231643826577 0.913384914398194 0.999536712346845 hm5C_site_24088 DeepMRMD:0.913384914398194;iRNA_m5C:0.999536712346845 24089 chr5 908535 908535 1 + C T HNSC 908541 + 908521 908561 41 TCAGATGCCATCCGCGTGGTCAATGCTGTCTTGACCCAAAT TCAGATGCCATCCGTGTGGTCAATGCTGTCTTGACCCAAAT < 41bp 1 0.369678838966784 1 0.154636085033417 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908541 chr5:908535 synonymous SNV . 0 15 hm5C_associated_SNPs_23239 0 0 1 0 2 Ribosome 1 0.500195702052853 1 0.999608595894295 hm5C_site_24089 DeepMRMD:1;iRNA_m5C:0.999608595894295 24090 chr6 107956339 107956339 1 + C T HNSC 107956346 + 107956326 107956366 41 CCTGAGGAACCGGCGGTGAGCGAGCTAGAGTCGGTCAAGGA CCTGAGGAACCGGTGGTGAGCGAGCTAGAGTCGGTCAAGGA < 41bp 1 0.517398150415471 1 0.607241928577423 experiment 0.965203699169057 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SOBP ENSG00000112320 CDS Human protein_coding chr6:107956346 chr6:107956339 nonsynonymous SNV 0.695 0 14 hm5C_associated_SNPs_23240 1 0 0 0 0 cytosol 1 0.500231643528692 0.785516142845154 0.999536712942617 hm5C_site_24090 DeepMRMD:0.785516142845154;iRNA_m5C:0.999536712942617 not specified not specified 24091 chr1 57161705 57161705 1 + A G HNSC 57161696 + 57161676 57161716 41 CCCTCCCATTTGATGATGAGCATGTACCTACGTTATTTAAG CCCTCCCATTTGATGATGAGCATGTACCTGCGTTATTTAAG < 41bp 1 0.164179092851371 1 0.0378483831882477 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57161696 chr1:57161705 nonsynonymous SNV 0.374 2 30 hm5C_associated_SNPs_23241 0 0 1 0 1 Endoplasmic reticulum 1 0.500231639333672 1 0.999536721332656 hm5C_site_24091 DeepMRMD:1;iRNA_m5C:0.999536721332656 24092 chr11 118516501 118516501 1 + G A HNSC 118516515 + 118516495 118516535 41 GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTCATGG GATGCTAAAAGAGGCTCATGCAGAGAAGAACCGGCTCATGG < 41bp 1 0.646501349872367 1 0.76174533367157 experiment 0.706997300255266 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118516515 chr11:118516501 synonymous SNV . 0 7 hm5C_associated_SNPs_23242 0 0 1 0 1 Cytosol 1 0.500231643928389 0.47650933265686 0.999536712143221 hm5C_site_24092 DeepMRMD:0.47650933265686;iRNA_m5C:0.999536712143221 24093 chr3 155628611 155628611 1 + G A HNSC 155628593 + 155628573 155628613 41 CTTTATGATATAGCTGGATGCAGTGGAACCTTCACCGTGCA CTTTATGATATAGCTGGATGCAGTGGAACCTTCACCGTACA < 41bp 1 0.443691528779464 1 0.470602810382843 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628593 chr3:155628611 synonymous SNV . 0 39 hm5C_associated_SNPs_23243 0 0 1 0 1 Nucleus 1 0.500231622709613 1 0.999536754580774 hm5C_site_24093 DeepMRMD:1;iRNA_m5C:0.999536754580774 24094 chr17 28961071 28961071 1 + G C HNSC 28961053 + 28961033 28961073 41 TATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGAC TATGACTATAAGAACAAACTCATCTTCGCAATATCTGTCAC < 41bp 1 0.0751458585615982 1 0.100877463817596 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28961053 chr17:28961071 . . 0 39 hm5C_associated_SNPs_23244 0 0 1 1 1 unknown 1 0.500232241528792 1 0.999535516942416 hm5C_site_24094 DeepMRMD:1;iRNA_m5C:0.999535516942416 24095 chr4 174242759 174242759 1 + C T HNSC 174242739 + 174242719 174242759 41 TGTGTTTTCCAGAACCTGCACAGATTTACTCATATTCCTTC TGTGTTTTCCAGAACCTGCACAGATTTACTCATATTCCTTT < 41bp 1 0.251930322280083 1 0.120232582092285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174242739 chr4:174242759 nonsynonymous SNV 0.998 1 41 hm5C_associated_SNPs_23245 0 0 1 0 1 chromatin 1 0.50023164392867 1 0.99953671214266 hm5C_site_24095 DeepMRMD:1;iRNA_m5C:0.99953671214266 24096 chr15 89843085 89843085 1 + G A HNSC 89843066 + 89843046 89843086 41 ATACACTTCAATTCCTACTTCAGTGGAAGAGTCGGGAAAGA ATACACTTCAATTCCTACTTCAGTGGAAGAGTCGGGAAAAA < 41bp 1 0.313807960273382 1 0.596841752529144 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89843066 chr15:89843085 synonymous SNV . 0 40 hm5C_associated_SNPs_23246 0 0 1 0 0 Nucleus 1 0.500231643921092 0.806316494941712 0.999536712157815 hm5C_site_24096 DeepMRMD:0.806316494941712;iRNA_m5C:0.999536712157815 24097 chr1 223943283 223943283 1 + C G HNSC 223943279 + 223943259 223943299 41 TGCACCTTCCTGGTGGGGCTCATTCAGAAGCACCGACGGCG TGCACCTTCCTGGTGGGGCTCATTGAGAAGCACCGACGGCG < 41bp 1 0.21416597140712 1 0.096655011177063 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943279 chr1:223943283 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_23247 0 0 1 0 1 Ribosome 1 0.500231643919012 1 0.999536712161976 hm5C_site_24097 DeepMRMD:1;iRNA_m5C:0.999536712161976 24098 chr1 223943283 223943283 1 + C G HNSC 223943292 + 223943272 223943312 41 TGGGGCTCATTCAGAAGCACCGACGGCGGCAGAGGAAGATG TGGGGCTCATTGAGAAGCACCGACGGCGGCAGAGGAAGATG < 41bp 1 0.669611810420313 1 0.369115471839905 experiment 0.660776379159373 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943292 chr1:223943283 nonsynonymous SNV 0.998 5 12 hm5C_associated_SNPs_23248 0 0 1 0 1 Ribosome 1 0.500232874558058 1 0.999534250883885 hm5C_site_24098 DeepMRMD:1;iRNA_m5C:0.999534250883885 24099 chr7 142460802 142460802 1 + G A HNSC 142460784 + 142460764 142460804 41 GTTGTCTCCTGGGGTGATGGCTGTGCCCAGAAGAACAAGCC GTTGTCTCCTGGGGTGATGGCTGTGCCCAGAAGAACAAACC < 41bp 1 0.349890304939688 1 0.408347457647324 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460784 chr7:142460802 synonymous SNV . 0 39 hm5C_associated_SNPs_23250 0 0 0 0 0 Cytosol 1 0.500231643914829 1 0.999536712170343 hm5C_site_24099 DeepMRMD:1;iRNA_m5C:0.999536712170343 24100 chr6 7572178 7572178 1 + G A HNSC 7572161 + 7572141 7572181 41 CCAACAGAGAAAATGACAAGCAAGAAACATGGATGCTGATG CCAACAGAGAAAATGACAAGCAAGAAACATGGATGCTAATG < 41bp 1 0.49366465613895 1 0.675338268280029 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572161 chr6:7572178 synonymous SNV . 0 38 hm5C_associated_SNPs_23251 0 0 1 0 0 Nucleus 1 0.500231643973131 0.649323463439942 0.999536712053737 hm5C_site_24100 DeepMRMD:0.649323463439942;iRNA_m5C:0.999536712053737 24101 chr6 7572178 7572178 1 + G A HNSC 7572176 + 7572156 7572196 41 ACAAGCAAGAAACATGGATGCTGATGGAGCTGCAGAAGATT ACAAGCAAGAAACATGGATGCTAATGGAGCTGCAGAAGATT < 41bp 1 0.127217971250325 1 0.0763287842273712 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572176 chr6:7572178 synonymous SNV . 0 23 hm5C_associated_SNPs_23252 0 0 1 0 0 Nucleus 1 0.500231602803013 1 0.999536794393974 hm5C_site_24101 DeepMRMD:1;iRNA_m5C:0.999536794393974 24102 chr2 217364725 217364725 1 + G C HNSC 217364705 + 217364685 217364725 41 GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAC < 41bp 1 0.69107932416575 1 0.189842402935028 experiment 0.6178413516685 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364705 chr2:217364725 nonsynonymous SNV 0.903 1 41 hm5C_associated_SNPs_23253 0 0 1 0 2 Cytosol 1 0.500231644360075 1 0.99953671127985 hm5C_site_24102 DeepMRMD:1;iRNA_m5C:0.99953671127985 24103 chr2 217364725 217364725 1 + G C HNSC 217364737 + 217364717 217364757 41 TGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACAAGTG TGCATGAACACAGTGGCTGGCGGTGCCTGGACGTACAAGTG < 41bp 1 0.602606834807942 1 0.488430768251419 experiment 0.794786330384116 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364737 chr2:217364725 nonsynonymous SNV 0.903 1 9 hm5C_associated_SNPs_23255 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24103 DeepMRMD:1;iRNA_m5C:0.999536712157815 24104 chr2 217364725 217364725 1 + G C HNSC 217364742 + 217364722 217364762 41 GAAGACAGTGGCTGGCGGTGCCTGGACGTACAAGTGAGTCT GAACACAGTGGCTGGCGGTGCCTGGACGTACAAGTGAGTCT < 41bp 1 0.33982162459807 1 0.360063135623932 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364742 chr2:217364725 nonsynonymous SNV 0.903 1 4 hm5C_associated_SNPs_23256 0 0 1 0 2 Cytosol 1 0.500226328222782 1 0.999547343554435 hm5C_site_24104 DeepMRMD:1;iRNA_m5C:0.999547343554435 24105 chr1 156142792 156142792 1 + G A HNSC 156142796 + 156142776 156142816 41 CTTGTCATGTACCTGGGAACCAGTGAGTAAAGAGTTCCGGG CTTGTCATGTACCTGGAAACCAGTGAGTAAAGAGTTCCGGG < 41bp 1 0.578219290549718 1 0.700400471687317 experiment 0.843561418900563 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142796 chr1:156142792 nonsynonymous SNV 0.975 4 17 hm5C_associated_SNPs_23258 0 0 0 0 1 exosome 1 0.500231644073298 0.599199056625366 0.999536711853404 hm5C_site_24105 DeepMRMD:0.599199056625366;iRNA_m5C:0.999536711853404 24106 chr14 102452268 102452268 1 + G A HNSC 102452273 + 102452253 102452293 41 TCACCGCTCGCCTTCGGGATCAGCTTGGCACAGCCAAGAAT TCACCGCTCGCCTTCAGGATCAGCTTGGCACAGCCAAGAAT < 41bp 1 0.146951273621716 1 0.166642338037491 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102452273 chr14:102452268 nonsynonymous SNV 0.844 4 16 hm5C_associated_SNPs_23259 0 0 1 0 0 Cytosol 1 0.500231637112679 1 0.999536725774642 hm5C_site_24106 DeepMRMD:1;iRNA_m5C:0.999536725774642 24107 chr18 13645287 13645287 1 + G A HNSC 13645293 + 13645273 13645313 41 CCACCTCCTTACCAGGGGCCCTGCACCCTGCAGCTCCGGGA CCACCTCCTTACCAAGGGCCCTGCACCCTGCAGCTCCGGGA < 41bp 1 0.489545878890097 1 0.0631329715251923 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLRAD4 ENSG00000168675 CDS Human protein_coding chr18:13645293 chr18:13645287 synonymous SNV . 0 15 hm5C_associated_SNPs_23260 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24107 DeepMRMD:1;iRNA_m5C:0.999536712157815 24108 chr19 50002790 50002790 1 + C T HNSC 50002809 + 50002789 50002829 41 TCGTCACAGTGGGCGAGTGCCGGCCTCTGAGCAAGACAGTG TTGTCACAGTGGGCGAGTGCCGGCCTCTGAGCAAGACAGTG < 41bp 1 0.545073248984029 1 0.426436901092529 experiment 0.909853502031942 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS11 ENSG00000142534 CDS Human protein_coding chr19:50002809 chr19:50002790 synonymous SNV . 0 2 hm5C_associated_SNPs_23261 0 0 1 0 1 chromatin 1 0.500229312901529 1 0.999541374196942 hm5C_site_24108 DeepMRMD:1;iRNA_m5C:0.999541374196942 24109 chr2 153494169 153494169 1 + G A HNSC 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCTGTCTTTGTCCAGTTTGTGAAAGCATATAAG < 41bp 1 0.144728666891662 1 0.170269906520844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494169 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_23262 0 0 0 0 2 Ribosome 1 0.500217968325805 1 0.99956406334839 hm5C_site_24109 DeepMRMD:1;iRNA_m5C:0.99956406334839 24110 chr19 45797632 45797632 1 + C T HNSC 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG ATGATCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG < 41bp 1 0.047475198875157 1 0.0609906911849976 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797632 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_23263 0 0 1 0 2 Nucleus 1 0.500232055904916 1 0.999535888190167 hm5C_site_24110 DeepMRMD:1;iRNA_m5C:0.999535888190167 24111 chr10 134219519 134219519 1 + G A HNSC 134219517 + 134219497 134219537 41 TCCATGGTTTTCCTTGGTGGCCGGCGCGTGTTCTTGACATC TCCATGGTTTTCCTTGGTGGCCAGCGCGTGTTCTTGACATC < 41bp 1 0.113077266473794 1 0.351637423038483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PWWP2B ENSG00000171813 CDS Human protein_coding chr10:134219517 chr10:134219519 synonymous SNV . 0 23 hm5C_associated_SNPs_23264 0 0 0 0 0 chromatin 1 0.500231631095382 1 0.999536737809236 hm5C_site_24111 DeepMRMD:1;iRNA_m5C:0.999536737809236 24112 chr17 17697199 17697199 1 + C T HNSC 17697208 + 17697188 17697228 41 CCAAGTATCAGCACTACGGGCAGCAAGGCCAGGGCTACTGC CCAAGTATCAGTACTACGGGCAGCAAGGCCAGGGCTACTGC < 41bp 1 0.420658582305061 1 0.107636600732803 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17697208 chr17:17697199 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_23265 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24112 DeepMRMD:1;iRNA_m5C:0.999536712157815 24113 chr6 31598918 31598918 1 + G A HNSC 31598935 + 31598915 31598955 41 GGAGCGAGACTCCTCCAGTACCTCCCCCACCACCCTATCTG GGAACGAGACTCCTCCAGTACCTCCCCCACCACCCTATCTG < 41bp 1 0.100419766401215 1 0.0350587069988251 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31598935 chr6:31598918 nonsynonymous SNV 0.992 2 4 hm5C_associated_SNPs_23266 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24113 DeepMRMD:1;iRNA_m5C:0.999536712157815 24114 chr19 11141507 11141507 1 + G T HNSC 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGGGCTCTGCCTGAACCTCCAGTCGGC < 41bp 1 0.428207999637468 1 0.292483627796173 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141507 nonsynonymous SNV 0.960 5 22 hm5C_associated_SNPs_23267 0 0 1 0 1 Nucleus 1 0.500231643948933 1 0.999536712102134 hm5C_site_24114 DeepMRMD:1;iRNA_m5C:0.999536712102134 24115 chr10 103291078 103291078 1 + A T HNSC 103291084 + 103291064 103291104 41 TATCCTAAAATTATACAAGACATTGAGGTAAGAATCTATGT TATCCTAAAATTATTCAAGACATTGAGGTAAGAATCTATGT < 41bp 1 0.0529305546808117 1 0.0465764999389648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103291084 chr10:103291078 synonymous SNV . 0 15 hm5C_associated_SNPs_23268 0 0 1 0 2 chromatin 1 0.500231564064376 1 0.999536871871247 hm5C_site_24115 DeepMRMD:1;iRNA_m5C:0.999536871871247 24116 chr3 108353773 108353773 1 + G T HNSC 108353763 + 108353743 108353783 41 AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG AAAGTTGCTGTGTTTATTTCCATAAAATTTTCTGGAAAAAG < 41bp 1 0.142200911452504 1 0.452269107103348 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108353763 chr3:108353773 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_23269 0 0 1 0 1 Ribosome 1 0.500231643511596 1 0.999536712976808 hm5C_site_24116 DeepMRMD:1;iRNA_m5C:0.999536712976808 24117 chr19 11105592 11105592 1 + C A HNSC 11105582 + 11105562 11105602 41 TCACAGGCAAAATCCAGAAGCTGACCAAGGCAGTGGCCACG TCACAGGCAAAATCCAGAAGCTGACCAAGGAAGTGGCCACG < 41bp 1 0.153027378129113 1 0.210264325141907 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105582 chr19:11105592 nonsynonymous SNV 0.992 4 31 hm5C_associated_SNPs_23270 0 0 1 0 2 Nucleus 1 0.500257360770264 1 0.999485278459473 hm5C_site_24117 DeepMRMD:1;iRNA_m5C:0.999485278459473 24118 chr14 65194605 65194605 1 + C T HNSC 65194597 + 65194577 65194617 41 CCCGTTCAACAGCCGGGCAGCGGCAGGGCCTGCACACCACA CCCGTTCAACAGCCGGGCAGCGGCAGGGTCTGCACACCACA < 41bp 1 0.662913071993579 1 0.728903353214264 experiment 0.674173856012843 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65194597 chr14:65194605 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_23271 0 0 0 0 1 Nucleus 1 0.500231643921115 0.542193293571472 0.99953671215777 hm5C_site_24118 DeepMRMD:0.542193293571472;iRNA_m5C:0.99953671215777 24119 chr17 58024140 58024140 1 + G C HNSC 58024120 + 58024100 58024140 41 CTTTTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATG CTTTTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATC < 41bp 1 0.484207621542207 1 0.24544757604599 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58024120 chr17:58024140 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_23272 0 0 1 2 0 Ribosome 1 0.50023164392016 1 0.999536712159681 hm5C_site_24119 DeepMRMD:1;iRNA_m5C:0.999536712159681 24120 chr17 58024140 58024140 1 + G C HNSC 58024123 + 58024103 58024143 41 TTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATGAAT TTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATCAAT < 41bp 1 0.37811419584982 1 0.101139724254608 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58024123 chr17:58024140 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_23273 0 0 1 2 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_24120 DeepMRMD:1;iRNA_m5C:0.999536712157815 24121 chrX 135106627 135106627 1 + C T HNSC 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTTATGCTT < 41bp 1 0.305103006555702 1 0.741466403007507 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106627 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_23274 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644274588 0.517067193984986 0.999536711450824 hm5C_site_24121 DeepMRMD:0.517067193984986;iRNA_m5C:0.999536711450824 24122 chr10 127512149 127512149 1 + G T HNSC 127512131 + 127512111 127512151 41 CAGTGTGAGCGGCAACATGGCGTCCAGGTCTAAGCGGCGTG CAGTGTGAGCGGCAACATGGCGTCCAGGTCTAAGCGGCTTG < 41bp 1 0.370193330698784 1 0.160802781581879 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCCIP ENSG00000107949 CDS Human protein_coding chr10:127512131 chr10:127512149 nonsynonymous SNV 0.001 3 39 hm5C_associated_SNPs_23275 0 0 1 0 0 Ribosome 1 0.500231643976555 1 0.99953671204689 hm5C_site_24122 DeepMRMD:1;iRNA_m5C:0.99953671204689 24123 chr17 1747901 1747901 1 + C T HNSC 1747884 + 1747864 1747904 41 GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTCG GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTTTCG < 41bp 1 0.587113998255689 1 0.174499571323395 experiment 0.825772003488623 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1747884 chr17:1747901 nonsynonymous SNV 0.071 4 38 hm5C_associated_SNPs_23276 0 0 1 0 2 chromatin 1 0.500231643922513 1 0.999536712154974 hm5C_site_24123 DeepMRMD:1;iRNA_m5C:0.999536712154974 24124 chr1 154313342 154313342 1 + C T HNSC 154313339 + 154313319 154313359 41 CCCCTGTGCAGTGTGGAGGTCATCCGTCTGGGCCACAGCTA CCCCTGTGCAGTGTGGAGGTCATTCGTCTGGGCCACAGCTA < 41bp 1 0.0674258227270008 1 0.0260657668113708 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154313339 chr1:154313342 synonymous SNV . 0 24 hm5C_associated_SNPs_23277 0 0 1 0 0 chromatin 1 0.500239847730207 1 0.999520304539587 hm5C_site_24124 DeepMRMD:1;iRNA_m5C:0.999520304539587 24125 chr14 96998720 96998720 1 + C T HNSC 96998728 + 96998708 96998748 41 CATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT CATTGACAACTTTAGGTTAACTCTGAGAGCTATCAAACTAT < 41bp 1 0.507098067711416 1 0.0590348541736603 experiment 0.985803864577169 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96998728 chr14:96998720 synonymous SNV . 0 13 hm5C_associated_SNPs_23278 0 0 1 0 2 Ribosome 1 0.500231638877225 1 0.999536722245551 hm5C_site_24125 DeepMRMD:1;iRNA_m5C:0.999536722245551 24126 chr1 162745470 162745470 1 + A G HNSC 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTCTTAAGGAGATAAAGATCGTGTCTCGGCTCAAGGACCC < 41bp 1 0.327055424894335 1 0.138633400201797 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745470 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_23279 0 0 0 0 1 nucleolus 1 0.500231643688646 1 0.999536712622709 hm5C_site_24126 DeepMRMD:1;iRNA_m5C:0.999536712622709 24127 chr7 142561964 142561964 1 + G A HNSC 142561972 + 142561952 142561992 41 TACCGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC TACCGTCAGGCTAAGGAGCCCGACAGCCCTGACAGCGTTTC < 41bp 1 0.645316976080055 1 0.118663728237152 experiment 0.70936604783989 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561972 chr7:142561964 nonsynonymous SNV 0.978 1 13 hm5C_associated_SNPs_23280 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24127 DeepMRMD:1;iRNA_m5C:0.999536712157815 24128 chr8 48885504 48885504 1 + G C HNSC 48885502 + 48885482 48885522 41 ACCTGGTCGCACTGTACTACCAGAGCGAGGAGCAGGCAGAG ACCTGGTCGCACTGTACTACCACAGCGAGGAGCAGGCAGAG < 41bp 1 0.686983342341811 1 0.095167487859726 experiment 0.626033315316379 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48885502 chr8:48885504 nonsynonymous SNV 0.966 2 23 hm5C_associated_SNPs_23281 0 0 1 0 1 Cytosol 1 0.500232674893404 1 0.999534650213193 hm5C_site_24128 DeepMRMD:1;iRNA_m5C:0.999534650213193 24129 chr1 168014240 168014240 1 + C T HNSC 168014224 + 168014204 168014244 41 TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTTATCT < 41bp 1 0.362385612841847 1 0.466508567333221 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168014224 chr1:168014240 nonsynonymous SNV 0.024 0 37 hm5C_associated_SNPs_23282 0 0 1 0 0 Cytosol 1 0.5002316439234 1 0.9995367121532 hm5C_site_24129 DeepMRMD:1;iRNA_m5C:0.9995367121532 24130 chr10 75525644 75525644 1 + G T HNSC 75525655 + 75525635 75525675 41 GGCTCTTATGAATTCTTGGCCACTGTAGATTACTGCAAGGT GGCTCTTATTAATTCTTGGCCACTGTAGATTACTGCAAGGT < 41bp 1 0.21538758359059 1 0.10268434882164 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75525655 chr10:75525644 stopgain 1.000 1 10 hm5C_associated_SNPs_23283 0 0 1 0 2 Nucleus 1 0.500231763357778 1 0.999536473284444 hm5C_site_24130 DeepMRMD:1;iRNA_m5C:0.999536473284444 24131 chr3 44903512 44903512 1 + G C HNSC 44903511 + 44903491 44903531 41 TCCGCACCTCCAGGCGGGTGCGATGCGGCGCCGCTTTTGGG TCCGCACCTCCAGGCGGGTGCCATGCGGCGCCGCTTTTGGG < 41bp 1 0.248206162067397 1 0.071842223405838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM42 ENSG00000169964 CDS Human protein_coding chr3:44903511 chr3:44903512 synonymous SNV . 0 22 hm5C_associated_SNPs_23284 0 0 0 0 1 exosome 1 0.50023174050097 1 0.99953651899806 hm5C_site_24131 DeepMRMD:1;iRNA_m5C:0.99953651899806 24132 chr7 91714839 91714839 1 + A T HNSC 91714852 + 91714832 91714872 41 TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA TGAAGGCTTGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA < 41bp 1 0.251305532323452 1 0.0358345210552216 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714852 chr7:91714839 nonsynonymous SNV 0.997 1 8 hm5C_associated_SNPs_23285 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24132 DeepMRMD:1;iRNA_m5C:0.999536712157815 24133 chr7 91714839 91714839 1 + A T HNSC 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCTTGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA < 41bp 1 0.411342547327187 1 0.0955713987350464 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714839 nonsynonymous SNV 0.997 1 4 hm5C_associated_SNPs_23286 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24133 DeepMRMD:1;iRNA_m5C:0.999536712157815 24134 chr6 1390682 1390682 1 + G T HNSC 1390666 + 1390646 1390686 41 ACGAGTGCTTCATCAAGCTGCCTAAGGGCCTCGGGCGGCCC ACGAGTGCTTCATCAAGCTGCCTAAGGGCCTCGGGCTGCCC < 41bp 1 0.118066717741672 1 0.108475208282471 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1390666 chr6:1390682 nonsynonymous SNV 0.970 5 37 hm5C_associated_SNPs_23287 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24134 DeepMRMD:1;iRNA_m5C:0.999536712157815 24135 chr21 38117419 38117419 1 + C T HNSC 38117415 + 38117395 38117435 41 CCGGCGAACACTGCTAGGCACAGCCTGGTGCCAAGCTACGA CCGGCGAACACTGCTAGGCACAGCTTGGTGCCAAGCTACGA < 41bp 1 0.344496288990516 1 0.113015651702881 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIM2 ENSG00000159263 CDS Human protein_coding chr21:38117415 chr21:38117419 synonymous SNV . 0 25 hm5C_associated_SNPs_23288 0 0 0 0 1 nucleus 1 0.500232274005619 1 0.999535451988761 hm5C_site_24135 DeepMRMD:1;iRNA_m5C:0.999535451988761 24136 chr11 65268905 65268905 1 + G A HNSC 65268891 + 65268871 65268911 41 GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTA GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGACTGGTA < 41bp 1 0.160071083870379 1 0.433852910995483 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268891 chr11:65268905 . . 0 35 hm5C_associated_SNPs_23289 0 0 1 0 0 unknown 1 0.500231643920988 1 0.999536712158025 hm5C_site_24136 DeepMRMD:1;iRNA_m5C:0.999536712158025 24137 chr10 98744493 98744493 1 + G A HNSC 98744477 + 98744457 98744497 41 GGGCCTACGGTGAAAGCCAGCAAAGAAAAGCATGCTGATGG GGGCCTACGGTGAAAGCCAGCAAAGAAAAGCATGCTAATGG < 41bp 1 0.517062609160152 1 0.437629073858261 experiment 0.965874781679696 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LCOR ENSG00000155640 CDS Human other chr10:98744477 chr10:98744493 nonsynonymous SNV 0.046 1 37 hm5C_associated_SNPs_23290 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24137 DeepMRMD:1;iRNA_m5C:0.999536712157815 24138 chr10 12191690 12191690 1 + C T HNSC 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATACACTGAAAGATAGAGCTTTAT < 41bp 1 0.30631299639295 1 0.0715384483337402 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191690 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_23291 0 0 1 4 2 Ribosome 1 0.500231635538247 1 0.999536728923505 hm5C_site_24138 DeepMRMD:1;iRNA_m5C:0.999536728923505 24139 chr12 98995265 98995265 1 + A T HNSC 98995269 + 98995249 98995289 41 CCCTCCTCCACCCGAGATGCCAGAGTCTCTGAAGAAGAAGC CCCTCCTCCACCCGAGTTGCCAGAGTCTCTGAAGAAGAAGC < 41bp 1 0.613436159599315 1 0.563885092735291 experiment 0.773127680801369 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98995269 chr12:98995265 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_23292 0 0 1 0 0 Ribosome 1 0.500231643920361 0.872229814529418 0.999536712159279 hm5C_site_24139 DeepMRMD:0.872229814529418;iRNA_m5C:0.999536712159279 24140 chr7 128407640 128407640 1 + C T HNSC 128407641 + 128407621 128407661 41 AAGAGACCAAAGACTGGATCCTTCCCTCAGACTATGATCAT AAGAGACCAAAGACTGGATTCTTCCCTCAGACTATGATCAT < 41bp 1 0.195407061153699 1 0.0385686755180359 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407641 chr7:128407640 synonymous SNV . 0 20 hm5C_associated_SNPs_23293 0 0 1 0 1 Ribosome 1 0.500231644708096 1 0.999536710583808 hm5C_site_24140 DeepMRMD:1;iRNA_m5C:0.999536710583808 24141 chr7 128407640 128407640 1 + C T HNSC 128407644 + 128407624 128407664 41 AGACCAAAGACTGGATCCTTCCCTCAGACTATGATCATGCA AGACCAAAGACTGGATTCTTCCCTCAGACTATGATCATGCA < 41bp 1 0.146279453834625 1 0.22507432103157 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407644 chr7:128407640 synonymous SNV . 0 17 hm5C_associated_SNPs_23294 0 0 1 0 1 Ribosome 1 0.500231643920929 1 0.999536712158142 hm5C_site_24141 DeepMRMD:1;iRNA_m5C:0.999536712158142 24142 chr1 249210815 249210815 1 + G A HNSC 249210825 + 249210805 249210845 41 GTCATTGCTGGGAGAGGTATCCACTCAAAGGTGAAGTCTGC GTCATTGCTGAGAGAGGTATCCACTCAAAGGTGAAGTCTGC < 41bp 1 0.185693966868236 1 0.245109289884567 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249210825 chr1:249210815 nonsynonymous SNV 0.002 0 11 hm5C_associated_SNPs_23295 0 0 1 0 1 Cytosol 1 0.500231645723639 1 0.999536708552722 hm5C_site_24142 DeepMRMD:1;iRNA_m5C:0.999536708552722 24143 chr14 102502959 102502959 1 + G A HNSC 102502965 + 102502945 102502985 41 GTGCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGT GTGCACTGAGATTCAGTAACCCCCTTCTGGTCCAGGTTGGT < 41bp 1 0.0371480911024584 1 0.0274159908294678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502965 chr14:102502959 nonsynonymous SNV 0.050 4 15 hm5C_associated_SNPs_23297 0 0 1 0 1 Cytosol 1 0.500231643905164 1 0.999536712189673 hm5C_site_24143 DeepMRMD:1;iRNA_m5C:0.999536712189673 24144 chr14 102502959 102502959 1 + G A HNSC 102502967 + 102502947 102502987 41 GCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGTGT GCACTGAGATTCAGTAACCCCCTTCTGGTCCAGGTTGGTGT < 41bp 1 0.00807271974962705 1 0.0250576138496399 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502967 chr14:102502959 nonsynonymous SNV 0.050 4 13 hm5C_associated_SNPs_23298 0 0 1 0 1 Cytosol 1 0.50023164384346 1 0.99953671231308 hm5C_site_24144 DeepMRMD:1;iRNA_m5C:0.99953671231308 24145 chr1 3328721 3328721 1 + G T HNSC 3328714 + 3328694 3328734 41 GGCCAGCCCAAGTTTGGGGGCGGCTTGGCGCCCCCGGGGGC GGCCAGCCCAAGTTTGGGGGCGGCTTGTCGCCCCCGGGGGC < 41bp 1 0.398118201525483 1 0.254600584506989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328714 chr1:3328721 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_23299 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24145 DeepMRMD:1;iRNA_m5C:0.999536712157815 24146 chr1 3328721 3328721 1 + G T HNSC 3328724 + 3328704 3328744 41 AGTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGC AGTTTGGGGGCGGCTTGTCGCCCCCGGGGGCCCCGAACAGC < 41bp 1 0.297056063936839 1 0.402907729148865 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328724 chr1:3328721 nonsynonymous SNV 0.001 0 18 hm5C_associated_SNPs_23300 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24146 DeepMRMD:1;iRNA_m5C:0.999536712157815 24147 chr1 3328721 3328721 1 + G T HNSC 3328725 + 3328705 3328745 41 GTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCG GTTTGGGGGCGGCTTGTCGCCCCCGGGGGCCCCGAACAGCG < 41bp 1 0.539544124147621 1 0.494531124830246 experiment 0.920911751704759 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328725 chr1:3328721 nonsynonymous SNV 0.001 0 17 hm5C_associated_SNPs_23301 0 0 0 0 0 Nucleus 1 0.500231643948055 1 0.999536712103891 hm5C_site_24147 DeepMRMD:1;iRNA_m5C:0.999536712103891 24148 chr1 3328721 3328721 1 + G T HNSC 3328726 + 3328706 3328746 41 TTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGT TTTGGGGGCGGCTTGTCGCCCCCGGGGGCCCCGAACAGCGT < 41bp 1 0.498572000917068 1 0.519414901733398 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328726 chr1:3328721 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_23302 0 0 0 0 0 Nucleus 1 0.500231643921076 0.961170196533204 0.999536712157847 hm5C_site_24148 DeepMRMD:0.961170196533204;iRNA_m5C:0.999536712157847 24149 chr1 3328721 3328721 1 + G T HNSC 3328727 + 3328707 3328747 41 TTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGTG TTGGGGGCGGCTTGTCGCCCCCGGGGGCCCCGAACAGCGTG < 41bp 1 0.570055124723327 1 0.805609583854675 experiment 0.859889750553346 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328727 chr1:3328721 nonsynonymous SNV 0.001 0 15 hm5C_associated_SNPs_23303 0 0 0 0 0 Nucleus 1 0.500231643921093 0.38878083229065 0.999536712157815 hm5C_site_24149 DeepMRMD:0.38878083229065;iRNA_m5C:0.999536712157815 24150 chr7 2613121 2613121 1 + A G HNSC 2613101 + 2613081 2613121 41 GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAA GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAG < 41bp 1 0.485554879832475 1 0.560850560665131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IQCE ENSG00000106012 CDS Human protein_coding chr7:2613101 chr7:2613121 nonsynonymous SNV 0.999 3 41 hm5C_associated_SNPs_23304 0 0 0 0 2 chromatin 1 0.500231644429803 0.878298878669738 0.999536711140394 hm5C_site_24150 DeepMRMD:0.878298878669738;iRNA_m5C:0.999536711140394 24151 chr1 161130737 161130737 1 + C T HNSC 161130757 + 161130737 161130777 41 CCATCTCGGACCAACTTAGCCCGTTCCAAGTCTGTGAGCAG TCATCTCGGACCAACTTAGCCCGTTCCAAGTCTGTGAGCAG < 41bp 1 0.0925537334051096 1 0.112877786159515 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161130757 chr1:161130737 nonsynonymous SNV 0.997 0 1 hm5C_associated_SNPs_23305 0 0 1 0 0 Cytosol 1 0.500231643920913 1 0.999536712158175 hm5C_site_24151 DeepMRMD:1;iRNA_m5C:0.999536712158175 24152 chr18 7955231 7955231 1 + G A HNSC 7955214 + 7955194 7955234 41 ACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTG ACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAAGTG < 41bp 1 0.104825763783302 1 0.130069524049759 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955214 chr18:7955231 synonymous SNV . 0 38 hm5C_associated_SNPs_23306 0 0 0 0 0 Nucleus 1 0.500231628399348 1 0.999536743201304 hm5C_site_24152 DeepMRMD:1;iRNA_m5C:0.999536743201304 24153 chr18 7955231 7955231 1 + G A HNSC 7955215 + 7955195 7955235 41 CTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGG CTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAAGTGG < 41bp 1 0.068183719342444 1 0.0685909688472748 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955215 chr18:7955231 synonymous SNV . 0 37 hm5C_associated_SNPs_23307 0 0 0 0 0 Nucleus 1 0.500231643921151 1 0.999536712157698 hm5C_site_24153 DeepMRMD:1;iRNA_m5C:0.999536712157698 24154 chr18 7955231 7955231 1 + G A HNSC 7955216 + 7955196 7955236 41 TCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGA TCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAAGTGGA < 41bp 1 0.109330727652351 1 0.190331786870956 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955216 chr18:7955231 synonymous SNV . 0 36 hm5C_associated_SNPs_23308 0 0 0 0 0 Nucleus 1 0.500231638758743 1 0.999536722482514 hm5C_site_24154 DeepMRMD:1;iRNA_m5C:0.999536722482514 24155 chr18 7955231 7955231 1 + G A HNSC 7955224 + 7955204 7955244 41 TGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCA TGGGGATGGGCCCATTGTGGCCCGAGAAGTGGAGTACTGCA < 41bp 1 0.545086608908108 1 0.106155782938004 experiment 0.909826782183783 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955224 chr18:7955231 synonymous SNV . 0 28 hm5C_associated_SNPs_23309 0 0 0 0 0 Nucleus 1 0.500231643921088 1 0.999536712157825 hm5C_site_24155 DeepMRMD:1;iRNA_m5C:0.999536712157825 24156 chr18 7955231 7955231 1 + G A HNSC 7955225 + 7955205 7955245 41 GGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCAC GGGGATGGGCCCATTGTGGCCCGAGAAGTGGAGTACTGCAC < 41bp 1 0.29503674683923 1 0.313200652599335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955225 chr18:7955231 synonymous SNV . 0 27 hm5C_associated_SNPs_23310 0 0 0 0 0 Nucleus 1 0.500231614692169 1 0.999536770615661 hm5C_site_24156 DeepMRMD:1;iRNA_m5C:0.999536770615661 24157 chr18 7955231 7955231 1 + G A HNSC 7955226 + 7955206 7955246 41 GGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACG GGGATGGGCCCATTGTGGCCCGAGAAGTGGAGTACTGCACG < 41bp 1 0.618138673591203 1 0.247400283813477 experiment 0.763722652817595 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955226 chr18:7955231 synonymous SNV . 0 26 hm5C_associated_SNPs_23311 0 0 0 0 0 Nucleus 1 0.50023164392127 1 0.999536712157461 hm5C_site_24157 DeepMRMD:1;iRNA_m5C:0.999536712157461 24158 chr11 61897977 61897977 1 + C T HNSC 61897996 + 61897976 61898016 41 CCAAACAGGAAAGTGTTGTCCGCAGGGCGAGCAGAAGGCTT CTAAACAGGAAAGTGTTGTCCGCAGGGCGAGCAGAAGGCTT < 41bp 1 0.531207612142431 1 0.559327065944672 experiment 0.937584775715138 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897996 chr11:61897977 synonymous SNV . 0 2 hm5C_associated_SNPs_23312 0 0 1 0 1 chromatin 1 0.500228886897116 0.881345868110656 0.999542226205768 hm5C_site_24158 DeepMRMD:0.881345868110656;iRNA_m5C:0.999542226205768 24159 chr1 228879196 228879196 1 + G T HNSC 228879178 + 228879158 228879198 41 CACTGTCCCAAAGCCCCCATCATCCTAGTTGGAACGCAGTC CACTGTCCCAAAGCCCCCATCATCCTAGTTGGAACGCATTC < 41bp 1 0.112955274732982 1 0.100091755390167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOU ENSG00000116574 CDS Human protein_coding chr1:228879178 chr1:228879196 nonsynonymous SNV 0.847 3 39 hm5C_associated_SNPs_23313 0 0 1 0 0 Ribosome 1 0.500231643920712 1 0.999536712158576 hm5C_site_24159 DeepMRMD:1;iRNA_m5C:0.999536712158576 24160 chr3 49050668 49050668 1 + C G HNSC 49050657 + 49050637 49050677 41 TGGGCCCAGTGTCTACCCTGCCCTCTCTGCACGGGAAGCAG TGGGCCCAGTGTCTACCCTGCCCTCTCTGCAGGGGAAGCAG < 41bp 1 0.0328388096868524 1 0.014741450548172 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR6 ENSG00000178252 CDS Human protein_coding chr3:49050657 chr3:49050668 nonsynonymous SNV 0.997 4 32 hm5C_associated_SNPs_23314 0 0 1 0 0 Nucleus 1 0.500231643920106 1 0.999536712159789 hm5C_site_24160 DeepMRMD:1;iRNA_m5C:0.999536712159789 24161 chr16 70575702 70575702 1 + G A HNSC 70575721 + 70575701 70575741 41 TGAGTTGGACAGCCTCTCTCCCATTCTGTTTTGCCAGGTTG TAAGTTGGACAGCCTCTCTCCCATTCTGTTTTGCCAGGTTG < 41bp 1 0.0309589560716515 1 0.0712500214576721 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70575721 chr16:70575702 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_23315 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_24161 DeepMRMD:1;iRNA_m5C:0.999536712157814 24162 chr9 108377582 108377582 1 + G A HNSC 108377587 + 108377567 108377607 41 TGATGATAACACTGTGGAAGCTGTGGCCTTTCGGAAGAGTG TGATGATAACACTGTAGAAGCTGTGGCCTTTCGGAAGAGTG < 41bp 1 0.260881809737653 1 0.14705491065979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FKTN ENSG00000106692 CDS Human protein_coding chr9:108377587 chr9:108377582 synonymous SNV . 0 16 hm5C_associated_SNPs_23316 0 0 1 0 1 Ribosome 1 0.500231635290182 1 0.999536729419636 hm5C_site_24162 DeepMRMD:1;iRNA_m5C:0.999536729419636 24163 chr16 68104954 68104954 1 + C G HNSC 68104973 + 68104953 68104993 41 TCTTCCTCAAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG TGTTCCTCAAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG < 41bp 1 0.197199004356714 1 0.427280247211456 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104973 chr16:68104954 nonsynonymous SNV 0.989 2 2 hm5C_associated_SNPs_23317 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_24163 DeepMRMD:1;iRNA_m5C:0.999536712157815 24164 chr1 82372826 82372826 1 + G T HNSC 82372824 + 82372804 82372844 41 TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGT TTGAGAGCGCTAACTATGGTCGTACGGATGACAAGATTTGT < 41bp 1 0.0919246819370884 1 0.136998176574707 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82372824 chr1:82372826 synonymous SNV . 0 23 hm5C_associated_SNPs_23318 0 0 1 0 1 cytosol 1 0.500238992754239 1 0.999522014491521 hm5C_site_24164 DeepMRMD:1;iRNA_m5C:0.999522014491521 24165 chr2 160605112 160605112 1 + G C HNSC 160605129 + 160605109 160605149 41 ACAGAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAG ACACAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAG < 41bp 1 0.628595752734419 1 0.119097709655762 experiment 0.742808494531161 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160605129 chr2:160605112 nonsynonymous SNV 0.939 2 4 hm5C_associated_SNPs_23319 0 0 1 1 0 Cytosol 1 0.500231685560418 1 0.999536628879164 hm5C_site_24165 DeepMRMD:1;iRNA_m5C:0.999536628879164 24166 chr20 37078059 37078059 1 + A G HNSC 37078042 + 37078022 37078062 41 CAAAAATGATCACGGGCTGCCTGTGCTCTGGTCATCAATAA CAAAAATGATCACGGGCTGCCTGTGCTCTGGTCATCAGTAA < 41bp 1 0.357369562661363 1 0.366188436746597 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA60 ENSG00000199266 ncRNA_exonic Human snoRNA chr20:37078042 chr20:37078059 . . 0 38 hm5C_associated_SNPs_23320 0 0 1 0 0 unknown 1 0.500231643920247 1 0.999536712159506 hm5C_site_24166 DeepMRMD:1;iRNA_m5C:0.999536712159506 24167 chr20 37078059 37078059 1 + A G HNSC 37078054 + 37078034 37078074 41 CGGGCTGCCTGTGCTCTGGTCATCAATAACGCAGGGAGAGG CGGGCTGCCTGTGCTCTGGTCATCAGTAACGCAGGGAGAGG < 41bp 1 0.328138506433881 1 0.0491955578327179 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA60 ENSG00000199266 ncRNA_exonic Human snoRNA chr20:37078054 chr20:37078059 . . 0 26 hm5C_associated_SNPs_23321 0 0 1 0 0 unknown 1 0.500231693840408 1 0.999536612319184 hm5C_site_24167 DeepMRMD:1;iRNA_m5C:0.999536612319184 24168 chr17 72764743 72764743 1 + G A HNSC 72764746 + 72764726 72764766 41 GAAACGCAGCAGCAAACGGGCCCCGCAGATGGACTGGAGCA GAAACGCAGCAGCAAACAGGCCCCGCAGATGGACTGGAGCA < 41bp 1 0.280848609057432 1 0.106983512639999 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72764746 chr17:72764743 nonsynonymous SNV 0.998 3 18 hm5C_associated_SNPs_23322 0 0 1 0 0 Ribosome 1 0.500230887252495 1 0.99953822549501 hm5C_site_24168 DeepMRMD:1;iRNA_m5C:0.99953822549501 24169 chr13 76393647 76393647 1 + C T HNSC 76393641 + 76393621 76393661 41 TGAGAAGTCTAAGAGAAGCTCTAAGACGTTTAAGGAAATGC TGAGAAGTCTAAGAGAAGCTCTAAGATGTTTAAGGAAATGC < 41bp 1 0.334199684724297 1 0.195094674825668 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76393641 chr13:76393647 nonsynonymous SNV 0.989 4 27 hm5C_associated_SNPs_23323 0 0 1 0 1 Cytosol 1 0.500231644266082 1 0.999536711467836 hm5C_site_24169 DeepMRMD:1;iRNA_m5C:0.999536711467836 24170 chr12 113872019 113872019 1 + C A HNSC 113872014 + 113871994 113872034 41 AGAATGTCCCCCCGTTTGACCACCCCCTAATATGGTAAGGC AGAATGTCCCCCCGTTTGACCACCCACTAATATGGTAAGGC < 41bp 1 0.177413045636692 1 0.0879810154438019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SDSL ENSG00000139410 CDS Human protein_coding chr12:113872014 chr12:113872019 synonymous SNV . 0 26 hm5C_associated_SNPs_23324 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24170 DeepMRMD:1;iRNA_m5C:0.999536712157815 24171 chr12 82752438 82752438 1 + T A HNSC 82752435 + 82752415 82752455 41 TGCAGTTCCTGAGGGATGCCCTGTCCATTTCCAATGCACAT TGCAGTTCCTGAGGGATGCCCTGACCATTTCCAATGCACAT < 41bp 1 0.362033809220089 1 0.106695652008057 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL25 ENSG00000127720 CDS Human protein_coding chr12:82752435 chr12:82752438 nonsynonymous SNV 0.413 0 24 hm5C_associated_SNPs_23325 0 0 1 0 0 cytosol 1 0.500281494039896 1 0.999437011920209 hm5C_site_24171 DeepMRMD:1;iRNA_m5C:0.999437011920209 24172 chr6 43096998 43096998 1 + C T HNSC 43096986 + 43096966 43097006 41 GAAGCCCGCAGTGCCAACGCCTCCTTCAACATCAAATGTGA GAAGCCCGCAGTGCCAACGCCTCCTTCAACATTAAATGTGA < 41bp 1 0.172811435163159 1 0.769067049026489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK7 ENSG00000112655 CDS Human protein_coding chr6:43096986 chr6:43096998 synonymous SNV . 0 33 hm5C_associated_SNPs_23326 0 0 1 0 1 Endoplasmic reticulum 1 0.500246958147962 0.461865901947022 0.999506083704076 hm5C_site_24172 DeepMRMD:0.461865901947022;iRNA_m5C:0.999506083704076 24173 chr19 4950635 4950635 1 + C G HNSC 4950627 + 4950607 4950647 41 CTGACTCTCCCTGCAGGGCGCTGGCTCTCAACTGCTTTGCT CTGACTCTCCCTGCAGGGCGCTGGCTCTGAACTGCTTTGCT < 41bp 1 0.222562518219115 1 0.0919357538223267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950627 chr19:4950635 . . 0 29 hm5C_associated_SNPs_23327 0 0 0 0 1 chromatin 1 0.500231643962131 1 0.999536712075737 hm5C_site_24173 DeepMRMD:1;iRNA_m5C:0.999536712075737 24174 chr19 4950635 4950635 1 + C G HNSC 4950631 + 4950611 4950651 41 CTCTCCCTGCAGGGCGCTGGCTCTCAACTGCTTTGCTCCCA CTCTCCCTGCAGGGCGCTGGCTCTGAACTGCTTTGCTCCCA < 41bp 1 0.438390598136412 1 0.264455199241638 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950631 chr19:4950635 . . 0 25 hm5C_associated_SNPs_23328 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24174 DeepMRMD:1;iRNA_m5C:0.999536712157815 24175 chr12 53854798 53854798 1 + G A HNSC 53854793 + 53854773 53854813 41 ATTTTGAATTTCTTTTTACTCCAAAGAGTACAGGGGCTCAG ATTTTGAATTTCTTTTTACTCCAAAAAGTACAGGGGCTCAG < 41bp 1 0.333056951297944 1 0.332018792629242 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCBP2 ENSG00000197111 splicing Human protein_coding chr12:53854793 chr12:53854798 . 0.998 0 26 hm5C_associated_SNPs_23329 0 0 1 1 0 Cytosol 1 0.50023165236935 1 0.999536695261301 hm5C_site_24175 DeepMRMD:1;iRNA_m5C:0.999536695261301 24176 chr12 53854798 53854798 1 + G A HNSC 53854794 + 53854774 53854814 41 TTTTGAATTTCTTTTTACTCCAAAGAGTACAGGGGCTCAGG TTTTGAATTTCTTTTTACTCCAAAAAGTACAGGGGCTCAGG < 41bp 1 0.314306858724113 1 0.271703153848648 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCBP2 ENSG00000197111 splicing Human protein_coding chr12:53854794 chr12:53854798 . 0.998 0 25 hm5C_associated_SNPs_23330 0 0 1 1 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24176 DeepMRMD:1;iRNA_m5C:0.999536712157815 24177 chr15 40862066 40862066 1 + A G HNSC 40862046 + 40862026 40862066 41 CACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTA CACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTG < 41bp 1 0.353320693233818 1 0.475253641605377 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40862046 chr15:40862066 nonsynonymous SNV 0.951 4 41 hm5C_associated_SNPs_23331 0 0 0 0 1 Cytosol 1 0.500231647534135 1 0.999536704931731 hm5C_site_24177 DeepMRMD:1;iRNA_m5C:0.999536704931731 24178 chr15 40862066 40862066 1 + A G HNSC 40862047 + 40862027 40862067 41 ACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTAC ACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTGC < 41bp 1 0.497005946165495 1 0.872754991054535 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40862047 chr15:40862066 nonsynonymous SNV 0.951 4 40 hm5C_associated_SNPs_23332 0 0 0 0 1 Cytosol 1 0.500231643921248 0.25449001789093 0.999536712157503 hm5C_site_24178 DeepMRMD:0.25449001789093;iRNA_m5C:0.999536712157503 24179 chr16 85687969 85687969 1 + C T HNSC 85687966 + 85687946 85687986 41 TCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGC TCAGGAGAAGGCAGGGGGACCAGTCATCCCCTCGCACCTGC < 41bp 1 0.341751225580333 1 0.321201056241989 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85687966 chr16:85687969 nonsynonymous SNV 0.932 1 24 hm5C_associated_SNPs_23333 0 0 1 0 2 Cytosol 1 0.500231643455023 1 0.999536713089955 hm5C_site_24179 DeepMRMD:1;iRNA_m5C:0.999536713089955 24180 chr12 57604642 57604642 1 + T C HNSC 57604652 + 57604632 57604672 41 CCCGGCTTCCTGGGCGACCGCTGCCAGTACCGTGAGTGAGC CCCGGCTTCCCGGGCGACCGCTGCCAGTACCGTGAGTGAGC < 41bp 1 0.165460235894903 1 0.276858448982239 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604652 chr12:57604642 nonsynonymous SNV 0.993 0 11 hm5C_associated_SNPs_23334 0 0 1 0 1 Exosome 1 0.50023164302505 1 0.999536713949899 hm5C_site_24180 DeepMRMD:1;iRNA_m5C:0.999536713949899 24181 chr16 85687968 85687968 1 + G T HNSC 85687966 + 85687946 85687986 41 TCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCGCACCTGC TCAGGAGAAGGCAGGGGGACCATCCATCCCCTCGCACCTGC < 41bp 1 0.22424216135692 1 0.227503389120102 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85687966 chr16:85687968 nonsynonymous SNV 0.902 1 23 hm5C_associated_SNPs_23335 0 0 1 0 2 Cytosol 1 0.500231644860366 1 0.999536710279268 hm5C_site_24181 DeepMRMD:1;iRNA_m5C:0.999536710279268 24182 chr1 31811836 31811836 1 + C T HNSC 31811833 + 31811813 31811853 41 GATAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCA GATAGAATAAAAGTATCCCTCTCTATGAAGGTTGTCAATCA < 41bp 1 0.590780884676064 1 0.944318413734436 experiment 0.818438230647871 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31811833 chr1:31811836 synonymous SNV . 0 24 hm5C_associated_SNPs_23336 0 0 1 0 2 Ribosome 1 0.500231643947473 0.111363172531128 0.999536712105055 hm5C_site_24182 DeepMRMD:0.111363172531128;iRNA_m5C:0.999536712105055 24183 chr3 183885461 183885461 1 + G T HNSC 183885453 + 183885433 183885473 41 CCTGAATCAGGGTTGGAGGTCCGTGACCGCATGTGGCTCAA CCTGAATCAGGGTTGGAGGTCCGTGACCTCATGTGGCTCAA < 41bp 1 0.248155893575506 1 0.274539232254028 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183885453 chr3:183885461 nonsynonymous SNV 0.999 4 29 hm5C_associated_SNPs_23337 0 0 1 0 2 Cytosol 1 0.500231638813281 1 0.999536722373437 hm5C_site_24183 DeepMRMD:1;iRNA_m5C:0.999536722373437 24184 chr5 154179521 154179521 1 + G T HNSC 154179534 + 154179514 154179554 41 AGGGCCTGTCTGCCAGCCTGCCTGACCTGGATTCTGAGAAC AGGGCCTTTCTGCCAGCCTGCCTGACCTGGATTCTGAGAAC < 41bp 1 0.231566861602933 1 0.142346143722534 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154179534 chr5:154179521 synonymous SNV . 0 8 hm5C_associated_SNPs_23338 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24184 DeepMRMD:1;iRNA_m5C:0.999536712157815 24185 chr17 64785040 64785040 1 + G A HNSC 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCCGGAGAATCGACTGGGAAAAACTGGAGAA < 41bp 1 0.400296379333093 1 0.429358661174774 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785040 synonymous SNV . 0 18 hm5C_associated_SNPs_23339 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24185 DeepMRMD:1;iRNA_m5C:0.999536712157815 24186 chr17 64785040 64785040 1 + G A HNSC 64785046 + 64785026 64785066 41 GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAG GCCTTCTTCCGGAGAATCGACTGGGAAAAACTGGAGAACAG < 41bp 1 0.602193719894929 1 0.482806235551834 experiment 0.795612560210142 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785046 chr17:64785040 synonymous SNV . 0 15 hm5C_associated_SNPs_23340 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24186 DeepMRMD:1;iRNA_m5C:0.999536712157815 24187 chr12 111744752 111744752 1 + G T HNSC 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCGTGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA < 41bp 1 0.242055451679098 1 0.181320518255234 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744752 nonsynonymous SNV 0.042 3 5 hm5C_associated_SNPs_23341 0 0 0 0 1 exosome 1 0.500231643920814 1 0.999536712158372 hm5C_site_24187 DeepMRMD:1;iRNA_m5C:0.999536712158372 24188 chr12 111744752 111744752 1 + G T HNSC 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCGTGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG < 41bp 1 0.295059212358451 1 0.342361718416214 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744752 nonsynonymous SNV 0.042 3 4 hm5C_associated_SNPs_23342 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24188 DeepMRMD:1;iRNA_m5C:0.999536712157815 24189 chr4 8229851 8229851 1 + G T HNSC 8229856 + 8229836 8229876 41 CATCACCTTCATGACGCAGGCAGTGGAAGCCAGTGCTATTG CATCACCTTCATGACTCAGGCAGTGGAAGCCAGTGCTATTG < 41bp 1 0.386838604922392 1 0.461847275495529 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8229856 chr4:8229851 synonymous SNV . 0 16 hm5C_associated_SNPs_23344 0 0 0 0 0 cytosol 1 0.500231647488595 1 0.99953670502281 hm5C_site_24189 DeepMRMD:1;iRNA_m5C:0.99953670502281 24190 chr5 110097165 110097165 1 + T C HNSC 110097160 + 110097140 110097180 41 TGTGCAGAGTATGTTGGATGCTTATTTTCCAGAACTTATTG TGTGCAGAGTATGTTGGATGCTTATCTTCCAGAACTTATTG < 41bp 1 0.245631017532838 1 0.0609715282917023 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC25A46 ENSG00000164209 CDS Human protein_coding chr5:110097160 chr5:110097165 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_23347 0 0 1 0 0 Cytosol 1 0.50023181069217 1 0.99953637861566 hm5C_site_24190 DeepMRMD:1;iRNA_m5C:0.99953637861566 24191 chr14 103802212 103802212 1 + C G HNSC 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TGAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG < 41bp 1 0.175960401397421 1 0.0521022379398346 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802212 synonymous SNV . 0 2 hm5C_associated_SNPs_23348 0 0 1 0 1 Cytosol 1 0.500231643762392 1 0.999536712475216 hm5C_site_24191 DeepMRMD:1;iRNA_m5C:0.999536712475216 24192 chr1 120283058 120283058 1 + G A HNSC 120283038 + 120283018 120283058 41 CAGGCCCTTACCAGTGCCTTCTCTCCACACACCAAGCCTTG CAGGCCCTTACCAGTGCCTTCTCTCCACACACCAAGCCTTA < 41bp 1 0.11746517598488 1 0.452867269515991 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120283038 chr1:120283058 stopgain 1.000 1 41 hm5C_associated_SNPs_23349 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_24192 DeepMRMD:1;iRNA_m5C:0.999536712157815 24193 chr1 228401943 228401943 1 + G A HNSC 228401926 + 228401906 228401946 41 GGCGGTGCGCGTGGGCGACACGGCTATGTTTTGCGTGGAGC GGCGGTGCGCGTGGGCGACACGGCTATGTTTTGCGTGAAGC < 41bp 1 0.185456347694808 1 0.593474328517914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228401926 chr1:228401943 nonsynonymous SNV 0.866 3 38 hm5C_associated_SNPs_23350 0 0 1 0 1 Ribosome 1 0.500231643919313 0.813051342964172 0.999536712161373 hm5C_site_24193 DeepMRMD:0.813051342964172;iRNA_m5C:0.999536712161373 24194 chr12 53664573 53664573 1 + G A HNSC 53664581 + 53664561 53664601 41 ACGGACCACATGGGGATGACCGGTTAGTGCCCTGGGTCCCA ACGGACCACATGAGGATGACCGGTTAGTGCCCTGGGTCCCA < 41bp 1 0.250324729406655 1 0.665262222290039 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53664581 chr12:53664573 nonsynonymous SNV 0.983 0 13 hm5C_associated_SNPs_23351 0 0 1 0 1 Nucleus 1 0.500231643921092 0.669475555419922 0.999536712157815 hm5C_site_24194 DeepMRMD:0.669475555419922;iRNA_m5C:0.999536712157815 24195 chr15 99672296 99672296 1 + G A HNSC 99672281 + 99672261 99672301 41 GGAGATTATTTTTCAGGGCCCCATTTCTGCTGCAGGGAAGG GGAGATTATTTTTCAGGGCCCCATTTCTGCTGCAGAGAAGG < 41bp 1 0.00720948408149886 1 0.0517691075801849 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99672281 chr15:99672296 nonsynonymous SNV 0.009 0 36 hm5C_associated_SNPs_23352 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24195 DeepMRMD:1;iRNA_m5C:0.999536712157815 24196 chr15 99672296 99672296 1 + G A HNSC 99672282 + 99672262 99672302 41 GAGATTATTTTTCAGGGCCCCATTTCTGCTGCAGGGAAGGT GAGATTATTTTTCAGGGCCCCATTTCTGCTGCAGAGAAGGT < 41bp 1 0.00757329910523368 1 0.169800847768784 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99672282 chr15:99672296 nonsynonymous SNV 0.009 0 35 hm5C_associated_SNPs_23353 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24196 DeepMRMD:1;iRNA_m5C:0.999536712157815 24197 chr16 2569563 2569563 1 + C T HNSC 2569545 + 2569525 2569565 41 TCTCTTCTCGCCCCCAGGAGCTTCCTCCAGCTGGGCGCCGG TCTCTTCTCGCCCCCAGGAGCTTCCTCCAGCTGGGCGCTGG < 41bp 1 0.227401318629868 1 0.0377614498138428 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569545 chr16:2569563 synonymous SNV . 0 39 hm5C_associated_SNPs_23354 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24197 DeepMRMD:1;iRNA_m5C:0.999536712157815 24198 chr1 104115869 104115869 1 + A G HNSC 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATCGAGAACTACAGTGATGCTACTCAGGTAAATTTTTTTA < 41bp 1 0.240602863102944 1 0.0789848566055298 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115869 nonsynonymous SNV 0.200 1 15 hm5C_associated_SNPs_23355 0 0 0 0 1 exosome 1 0.500231644077076 1 0.999536711845848 hm5C_site_24198 DeepMRMD:1;iRNA_m5C:0.999536711845848 24199 chr1 906558 906558 1 + G A HNSC 906564 + 906544 906584 41 GCTGTCTGTGCCTCGAGGGTCAAGCTGCAGCACCTGCCCGC GCTGTCTGTGCCTCAAGGGTCAAGCTGCAGCACCTGCCCGC < 41bp 1 0.605540751653021 1 0.385301530361176 experiment 0.788918496693958 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906564 chr1:906558 synonymous SNV . 0 15 hm5C_associated_SNPs_23356 0 0 0 0 2 chromatin 1 0.500231643879829 1 0.999536712240342 hm5C_site_24199 DeepMRMD:1;iRNA_m5C:0.999536712240342 24200 chr1 17272863 17272863 1 + C T HNSC 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGT < 41bp 1 0.123092686645936 1 0.0646290481090546 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272863 nonsynonymous SNV 0.967 3 41 hm5C_associated_SNPs_23357 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24200 DeepMRMD:1;iRNA_m5C:0.999536712157815 24201 chr11 65402557 65402557 1 + C T HNSC 65402544 + 65402524 65402564 41 TTGCCGACATGGACCTGCTTCACCGCGTTGTGGCGCCTGGG TTGCCGACATGGACCTGCTTCACCGCGTTGTGGTGCCTGGG < 41bp 1 0.253064864232948 1 0.109040290117264 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402544 chr11:65402557 nonsynonymous SNV 0.127 1 34 hm5C_associated_SNPs_23358 0 0 1 0 1 Ribosome 1 0.5002316038988 1 0.999536792202401 hm5C_site_24201 DeepMRMD:1;iRNA_m5C:0.999536792202401 24202 chr19 5691333 5691333 1 + C G HNSC 5691353 + 5691333 5691373 41 CTGACCAAACACACCAAGTTCGTGCGGGACATGATTCGGGA GTGACCAAACACACCAAGTTCGTGCGGGACATGATTCGGGA < 41bp 1 0.419725793468961 1 0.390615403652191 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691353 chr19:5691333 nonsynonymous SNV 0.508 0 1 hm5C_associated_SNPs_23359 0 0 1 0 0 Ribosome 1 0.500231643921088 1 0.999536712157824 hm5C_site_24202 DeepMRMD:1;iRNA_m5C:0.999536712157824 24203 chr9 139563123 139563123 1 + C T HNSC 139563111 + 139563091 139563131 41 ACCTGCGACGGGCACCGGGCCTGCAGCACCTACCGGTGAGT ACCTGCGACGGGCACCGGGCCTGCAGCACCTATCGGTGAGT < 41bp 1 0.685653270584456 1 0.16651064157486 experiment 0.628693458831088 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139563111 chr9:139563123 synonymous SNV . 0 33 hm5C_associated_SNPs_23360 0 0 0 0 1 Ribosome 1 0.500231643921325 1 0.99953671215735 hm5C_site_24203 DeepMRMD:1;iRNA_m5C:0.99953671215735 24204 chr7 44801094 44801094 1 + T C HNSC 44801091 + 44801071 44801111 41 CGGCTGACCTTCCCTGTGCGCGATGGGGTGGTCCTGGAGCC CGGCTGACCTTCCCTGTGCGCGACGGGGTGGTCCTGGAGCC < 41bp 1 0.578175691716852 1 0.640409529209137 experiment 0.843648616566296 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801091 chr7:44801094 synonymous SNV . 0 24 hm5C_associated_SNPs_23361 0 0 1 0 2 Cytosol 1 0.500231724482412 0.719180941581726 0.999536551035175 hm5C_site_24204 DeepMRMD:0.719180941581726;iRNA_m5C:0.999536551035175 24205 chr8 145151332 145151332 1 + T C HNSC 145151319 + 145151299 145151339 41 GTTCGACTATTTCCCAAAACCATACCCCAACAGTGAGGCTG GTTCGACTATTTCCCAAAACCATACCCCAACAGCGAGGCTG < 41bp 1 0.16658855971989 1 0.0430470407009125 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151319 chr8:145151332 synonymous SNV . 0 34 hm5C_associated_SNPs_23362 0 0 1 0 2 Ribosome 1 0.500231643921179 1 0.999536712157642 hm5C_site_24205 DeepMRMD:1;iRNA_m5C:0.999536712157642 24206 chr3 183369021 183369021 1 + A G HNSC 183369020 + 183369000 183369040 41 CATGAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT CATGAAGCAAGACGGTACCACGTACTTGGGAATGAAATGAT < 41bp 1 0.13138443391305 1 0.222517848014832 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183369020 chr3:183369021 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_23363 0 0 1 0 1 Ribosome 1 0.500277222746243 1 0.999445554507515 hm5C_site_24206 DeepMRMD:1;iRNA_m5C:0.999445554507515 24207 chr16 30096327 30096327 1 + C T HNSC 30096347 + 30096327 30096367 41 CCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC TCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC < 41bp 1 0.321934975065975 1 0.118390947580338 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096347 chr16:30096327 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_23364 0 0 1 1 1 Ribosome 1 0.500231643921024 1 0.999536712157952 hm5C_site_24207 DeepMRMD:1;iRNA_m5C:0.999536712157952 24208 chr8 98657027 98657027 1 + C T HNSC 98657015 + 98656995 98657035 41 CAAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGCGGCCCCCG CAAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGTGGCCCCCG < 41bp 1 0.568767910594769 1 0.560298323631287 experiment 0.862464178810461 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657015 chr8:98657027 nonsynonymous SNV 0.002 0 33 hm5C_associated_SNPs_23365 0 0 1 0 1 Ribosome 1 0.500231643550088 0.879403352737426 0.999536712899824 hm5C_site_24208 DeepMRMD:0.879403352737426;iRNA_m5C:0.999536712899824 24209 chr8 98657027 98657027 1 + C T HNSC 98657024 + 98657004 98657044 41 GGAGGCGGCGGCCGTGCCGGCCGCGGCCCCCGACGACCTGG GGAGGCGGCGGCCGTGCCGGCCGTGGCCCCCGACGACCTGG < 41bp 1 0.621796205758056 1 0.498929679393768 experiment 0.756407588483888 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657024 chr8:98657027 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_23367 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_24209 DeepMRMD:1;iRNA_m5C:0.999536712157816 24210 chr8 98657027 98657027 1 + C T HNSC 98657025 + 98657005 98657045 41 GAGGCGGCGGCCGTGCCGGCCGCGGCCCCCGACGACCTGGC GAGGCGGCGGCCGTGCCGGCCGTGGCCCCCGACGACCTGGC < 41bp 1 0.668710467400798 1 0.661360144615173 experiment 0.662579065198405 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657025 chr8:98657027 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_23368 0 0 1 0 1 Ribosome 1 0.500231464260969 0.677279710769654 0.999537071478062 hm5C_site_24210 DeepMRMD:0.677279710769654;iRNA_m5C:0.999537071478062 24211 chrX 107925107 107925107 1 + A T HNSC 107925116 + 107925096 107925136 41 CCAAGGACCTCAAGGCTTACCAGGTACCAATGCAGATCATC CCAAGGACCTCTAGGCTTACCAGGTACCAATGCAGATCATC < 41bp 1 0.303994465565013 1 0.833474636077881 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107925116 chrX:107925107 nonsynonymous SNV 0.990 2 12 hm5C_associated_SNPs_23369 0 0 1 0 1 Ribosome 1 0.500231647791864 0.333050727844238 0.999536704416272 hm5C_site_24211 DeepMRMD:0.333050727844238;iRNA_m5C:0.999536704416272 24212 chr7 128852125 128852125 1 + G T HNSC 128852114 + 128852094 128852134 41 GGACTCTTGCCGACAGGGAGCGTGGACCCTGGTCTCCAACC GGACTCTTGCCGACAGGGAGCGTGGACCCTGTTCTCCAACC < 41bp 1 0.449313604066725 1 0.387249529361725 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128852114 chr7:128852125 nonsynonymous SNV 0.995 1 32 hm5C_associated_SNPs_23370 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24212 DeepMRMD:1;iRNA_m5C:0.999536712157815 24213 chr2 47205965 47205965 1 + G A HNSC 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTCGAGGCATCTGAAAGACTGTCACCCGCTT < 41bp 1 0.552423482692349 1 0.810165584087372 experiment 0.895153034615301 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205965 nonsynonymous SNV 0.876 2 28 hm5C_associated_SNPs_23371 0 0 1 0 2 Nucleus 1 0.500231490746644 0.379668831825256 0.999537018506712 hm5C_site_24213 DeepMRMD:0.379668831825256;iRNA_m5C:0.999537018506712 24214 chr12 53663740 53663740 1 + G A HNSC 53663747 + 53663727 53663767 41 GGGCATTGTATGAGAGCTGCCAGTTCTTCCTTTCAGGCCTG GGGCATTGTATGAAAGCTGCCAGTTCTTCCTTTCAGGCCTG < 41bp 1 0.154654303324212 1 0.299002110958099 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663747 chr12:53663740 synonymous SNV . 0 14 hm5C_associated_SNPs_23372 0 0 1 0 0 Nucleus 1 0.500231643925844 1 0.999536712148312 hm5C_site_24214 DeepMRMD:1;iRNA_m5C:0.999536712148312 24215 chr5 5303769 5303769 1 + C A HNSC 5303760 + 5303740 5303780 41 CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCGACGCTGTC CCAACCCCTCGGCCAGAGCGCAGCTGCTGACCGACGCTGTC < 41bp 1 0.479745379554084 1 0.103218674659729 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303760 chr5:5303769 nonsynonymous SNV 0.104 2 30 hm5C_associated_SNPs_23373 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_24215 DeepMRMD:1;iRNA_m5C:0.999536712157815 24216 chr14 70235548 70235548 1 + A G HNSC 70235528 + 70235508 70235548 41 TTTGTAGGGTTACTATTGAACATGCTAGGGCTCGGTCACGA TTTGTAGGGTTACTATTGAACATGCTAGGGCTCGGTCACGG < 41bp 1 0.448512153750625 1 0.224020153284073 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70235528 chr14:70235548 synonymous SNV . 0 41 hm5C_associated_SNPs_23374 0 0 1 0 1 Nucleus 1 0.500231643921214 1 0.999536712157571 hm5C_site_24216 DeepMRMD:1;iRNA_m5C:0.999536712157571 24217 chr14 70235548 70235548 1 + A G HNSC 70235540 + 70235520 70235560 41 CTATTGAACATGCTAGGGCTCGGTCACGAGGTGGAAGAGGT CTATTGAACATGCTAGGGCTCGGTCACGGGGTGGAAGAGGT < 41bp 1 0.180855820223406 1 0.278237223625183 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70235540 chr14:70235548 synonymous SNV . 0 29 hm5C_associated_SNPs_23375 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24217 DeepMRMD:1;iRNA_m5C:0.999536712157815 24218 chr16 67917557 67917557 1 + G A HNSC 67917568 + 67917548 67917588 41 ACCCTGCCCGCTCTCCCAGCCTGTGCTCCTTTCCCTCATCC ACCCTGCCCACTCTCCCAGCCTGTGCTCCTTTCCCTCATCC < 41bp 1 0.270834933051518 1 0.0825860798358917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917568 chr16:67917557 synonymous SNV . 0 10 hm5C_associated_SNPs_23378 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24218 DeepMRMD:1;iRNA_m5C:0.999536712157815 24219 chr9 33917126 33917126 1 + C G HNSC 33917142 + 33917122 33917162 41 AGCTCAGATTTGCTTTACGACGACTTGTATGATGACGACAT AGCTGAGATTTGCTTTACGACGACTTGTATGATGACGACAT < 41bp 1 0.381463674232653 1 0.0516506731510162 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917142 chr9:33917126 stopgain 1.000 1 5 hm5C_associated_SNPs_23379 0 0 1 0 0 Cytosol 1 0.500231643704459 1 0.999536712591082 hm5C_site_24219 DeepMRMD:1;iRNA_m5C:0.999536712591082 24220 chr9 33917126 33917126 1 + C G HNSC 33917145 + 33917125 33917165 41 TCAGATTTGCTTTACGACGACTTGTATGATGACGACATTGA TGAGATTTGCTTTACGACGACTTGTATGATGACGACATTGA < 41bp 1 0.148809727167106 1 0.0630845725536346 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917145 chr9:33917126 stopgain 1.000 1 2 hm5C_associated_SNPs_23380 0 0 1 0 0 Cytosol 1 0.500232241459593 1 0.999535517080814 hm5C_site_24220 DeepMRMD:1;iRNA_m5C:0.999535517080814 24221 chr5 36985988 36985988 1 + A G HNSC 36986004 + 36985984 36986024 41 ATAAATCAAGATCTGATAAACTTGGTTTTAAATCACCAACT ATAAGTCAAGATCTGATAAACTTGGTTTTAAATCACCAACT < 41bp 1 0.342399943344773 1 0.124453574419022 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:36986004 chr5:36985988 synonymous SNV . 0 5 hm5C_associated_SNPs_23381 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24221 DeepMRMD:1;iRNA_m5C:0.999536712157815 24222 chr19 40704316 40704316 1 + C T HNSC 40704298 + 40704278 40704318 41 ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTCGC ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTTGC < 41bp 1 0.132256416491228 1 0.0632995069026947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40704298 chr19:40704316 synonymous SNV . 0 39 hm5C_associated_SNPs_23382 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_24222 DeepMRMD:1;iRNA_m5C:0.999536712157815 24223 chr8 121267542 121267542 1 + G A HNSC 121267525 + 121267505 121267545 41 GCCAAACATGTTGAAATGACCAGCTTGTGTGCCCACTGGCA GCCAAACATGTTGAAATGACCAGCTTGTGTGCCCACTAGCA < 41bp 1 0.346243918915056 1 0.326281666755676 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121267525 chr8:121267542 stopgain 0.891 1 38 hm5C_associated_SNPs_23383 0 0 0 0 0 Ribosome 1 0.500228084548912 1 0.999543830902176 hm5C_site_24223 DeepMRMD:1;iRNA_m5C:0.999543830902176 24224 chr21 44324169 44324169 1 + G T HNSC 44324165 + 44324145 44324185 41 CCAGCGCAAGGCGGCCCCTCCCCTGCCCAGAAAGGAAACCT CCAGCGCAAGGCGGCCCCTCCCCTTCCCAGAAAGGAAACCT < 41bp 1 0.0536684327032334 1 0.208073228597641 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFV3 ENSG00000160194 CDS Human protein_coding chr21:44324165 chr21:44324169 synonymous SNV . 0 25 hm5C_associated_SNPs_23384 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24224 DeepMRMD:1;iRNA_m5C:0.999536712157815 24225 chr3 30713559 30713559 1 + C G HNSC 30713566 + 30713546 30713586 41 AAGGACATCTTCTCAGACATCAATCTGAAGCATGAGAACAT AAGGACATCTTCTGAGACATCAATCTGAAGCATGAGAACAT < 41bp 1 0.136052691223881 1 0.0492409765720367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30713566 chr3:30713559 stopgain 0.996 1 14 hm5C_associated_SNPs_23385 0 0 1 0 0 Cytosol 1 0.500231657390475 1 0.999536685219051 hm5C_site_24225 DeepMRMD:1;iRNA_m5C:0.999536685219051 24226 chr6 158449877 158449877 1 + A G HNSC 158449888 + 158449868 158449908 41 ATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAA ATCACTGCCGCTGACTTTTACCCTCTTCAGGAAGAGGCCAA < 41bp 1 0.061037416471311 1 0.0554773807525635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449888 chr6:158449877 nonsynonymous SNV 0.122 0 10 hm5C_associated_SNPs_23386 0 0 1 4 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24226 DeepMRMD:1;iRNA_m5C:0.999536712157815 24227 chr10 103912172 103912172 1 + C T HNSC 103912153 + 103912133 103912173 41 CGTCGACAACGGTAGTGACGCGTATTGCCTGGAGGATGGCG CGTCGACAACGGTAGTGACGCGTATTGCCTGGAGGATGGTG < 41bp 1 0.384562089037716 1 0.0353205800056458 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103912153 chr10:103912172 nonsynonymous SNV 0.996 4 40 hm5C_associated_SNPs_23387 0 0 1 0 0 Nucleus 1 0.500231643941608 1 0.999536712116783 hm5C_site_24227 DeepMRMD:1;iRNA_m5C:0.999536712116783 24228 chr17 8172074 8172074 1 + C T HNSC 8172060 + 8172040 8172080 41 GCCTTCTGCTACGCCACAACCTGTCTGGGCGCTACGAGTCT GCCTTCTGCTACGCCACAACCTGTCTGGGCGCTATGAGTCT < 41bp 1 0.293101940729301 1 0.116841375827789 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFAS ENSG00000178921 CDS Human protein_coding chr17:8172060 chr17:8172074 synonymous SNV . 0 35 hm5C_associated_SNPs_23388 0 0 1 0 0 Nucleus 1 0.500252263607054 1 0.999495472785892 hm5C_site_24228 DeepMRMD:1;iRNA_m5C:0.999495472785892 24229 chr11 85977185 85977185 1 + T C HNSC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTCGGAGGATCAATTCAAAGAGAATGATGAA < 41bp 1 0.166450851904556 1 0.141456812620163 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977185 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_23389 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24229 DeepMRMD:1;iRNA_m5C:0.999536712157815 24230 chr16 81077197 81077197 1 + G C HNSC 81077198 + 81077178 81077218 41 GCTTGCTCTCTTAAGGAGAGCCTACCTCTTTTCAAAATTGC GCTTGCTCTCTTAAGGAGACCCTACCTCTTTTCAAAATTGC < 41bp 1 0.0163269489885052 1 0.0514872670173645 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81077198 chr16:81077197 nonsynonymous SNV 0.087 0 20 hm5C_associated_SNPs_23390 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_24230 DeepMRMD:1;iRNA_m5C:0.999536712157815 24231 chr9 35733425 35733425 1 + G A HNSC 35733405 + 35733385 35733425 41 TACCCTAGGAGATTGCTAGGCTAGTACTGACAGATGAGGAG TACCCTAGGAGATTGCTAGGCTAGTACTGACAGATGAGGAA < 41bp 1 0.322406465480865 1 0.147081583738327 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733405 chr9:35733425 synonymous SNV . 0 41 hm5C_associated_SNPs_23392 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643804927 1 0.999536712390146 hm5C_site_24231 DeepMRMD:1;iRNA_m5C:0.999536712390146 24232 chr9 35733425 35733425 1 + G A HNSC 35733411 + 35733391 35733431 41 AGGAGATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGT AGGAGATTGCTAGGCTAGTACTGACAGATGAGGAAAAGAGT < 41bp 1 0.157048717519844 1 0.458234697580338 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733411 chr9:35733425 synonymous SNV . 0 35 hm5C_associated_SNPs_23393 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643915726 1 0.999536712168548 hm5C_site_24232 DeepMRMD:1;iRNA_m5C:0.999536712168548 24233 chr9 35733425 35733425 1 + G A HNSC 35733415 + 35733395 35733435 41 GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT GATTGCTAGGCTAGTACTGACAGATGAGGAAAAGAGTCTAT < 41bp 1 0.405195837118633 1 0.162561476230621 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733415 chr9:35733425 synonymous SNV . 0 31 hm5C_associated_SNPs_23394 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643901961 1 0.999536712196079 hm5C_site_24233 DeepMRMD:1;iRNA_m5C:0.999536712196079 24234 chr7 2472402 2472402 1 + C T HNSC 2472416 + 2472396 2472436 41 CTAGGCCGCACACGGGGCCGCCGCTGCCCACGCCCGGGCCG CTAGGCTGCACACGGGGCCGCCGCTGCCCACGCCCGGGCCG < 41bp 1 0.487965014850419 1 0.207891076803207 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472416 chr7:2472402 nonsynonymous SNV 0.487 2 7 hm5C_associated_SNPs_23395 0 0 1 0 0 nucleolus 1 0.500231643921087 1 0.999536712157826 hm5C_site_24234 DeepMRMD:1;iRNA_m5C:0.999536712157826 24235 chrX 100880789 100880789 1 + C G HNSC 100880781 + 100880761 100880801 41 GAAACTCCTTTTGAATTTGGCTGAAAATCCAGCCATGACTA GAAACTCCTTTTGAATTTGGCTGAAAATGCAGCCATGACTA < 41bp 1 0.688571776218723 1 0.477179497480392 experiment 0.622856447562554 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880781 chrX:100880789 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_23396 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_24235 DeepMRMD:1;iRNA_m5C:0.999536712157814 24236 chrX 100880789 100880789 1 + C G HNSC 100880794 + 100880774 100880814 41 AATTTGGCTGAAAATCCAGCCATGACTAGGGAACTGCTCAG AATTTGGCTGAAAATGCAGCCATGACTAGGGAACTGCTCAG < 41bp 1 0.667455265962135 1 0.150969833135605 experiment 0.66508946807573 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880794 chrX:100880789 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_23397 0 0 1 0 0 Endoplasmic reticulum 1 0.500231386100857 1 0.999537227798286 hm5C_site_24236 DeepMRMD:1;iRNA_m5C:0.999537227798286 24237 chr1 161130531 161130531 1 + G A HNSC 161130542 + 161130522 161130562 41 CCAGGGCCCGCAGCAAGGAGCGCAGAAACCCAGCCTCTGGG CCAGGGCCCACAGCAAGGAGCGCAGAAACCCAGCCTCTGGG < 41bp 1 0.516006693702085 1 0.466773360967636 experiment 0.96798661259583 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161130542 chr1:161130531 nonsynonymous SNV 0.998 2 10 hm5C_associated_SNPs_23398 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24237 DeepMRMD:1;iRNA_m5C:0.999536712157815 24238 chr14 105355926 105355926 1 + C T HNSC 105355938 + 105355918 105355958 41 ACGGCTCCCCCAAACACACACGCTCCCACACCTCAACAGCC ACGGCTCCTCCAAACACACACGCTCCCACACCTCAACAGCC < 41bp 1 0.0372251676862084 1 0.160391509532928 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105355938 chr14:105355926 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_23399 0 0 1 0 1 Ribosome 1 0.50023164398343 1 0.99953671203314 hm5C_site_24238 DeepMRMD:1;iRNA_m5C:0.99953671203314 24239 chr3 128631364 128631364 1 + C G HNSC 128631356 + 128631336 128631376 41 CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATGAGCAGA CTTTTCCTTCCCAGATGCTCCAGAAAACGTAGATGAGCAGA < 41bp 1 0.544700978128268 1 0.539043545722961 experiment 0.910598043743463 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128631356 chr3:128631364 nonsynonymous SNV 0.995 1 29 hm5C_associated_SNPs_23400 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 0.921912908554078 0.999536712157815 hm5C_site_24239 DeepMRMD:0.921912908554078;iRNA_m5C:0.999536712157815 24240 chr7 76109854 76109854 1 + G T HNSC 76109850 + 76109830 76109870 41 GCCATGGCCCCAAGCCCTTCCCTGGTGCAGGTGTACACCAG GCCATGGCCCCAAGCCCTTCCCTGTTGCAGGTGTACACCAG < 41bp 1 0.207219904673674 1 0.273496061563492 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76109850 chr7:76109854 nonsynonymous SNV 0.748 0 25 hm5C_associated_SNPs_23401 0 0 0 0 0 Nucleus 1 0.500231643937849 1 0.999536712124302 hm5C_site_24240 DeepMRMD:1;iRNA_m5C:0.999536712124302 24241 chr20 57246299 57246299 1 + C T HNSC 57246308 + 57246288 57246328 41 ATTGTACAGTCCATTTCTGACCTGAATGAAATATTCAGGGA ATTGTACAGTCTATTTCTGACCTGAATGAAATATTCAGGGA < 41bp 1 0.401685687444916 1 0.184350699186325 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control STX16 ENSG00000124222;ENSG00000254995 CDS Human other chr20:57246308 chr20:57246299 synonymous SNV . 0 12 hm5C_associated_SNPs_23402 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643844224 1 0.999536712311551 hm5C_site_24241 DeepMRMD:1;iRNA_m5C:0.999536712311551 24242 chr5 137735605 137735605 1 + G A HNSC 137735614 + 137735594 137735634 41 GTGATGTGTGTGAAACAACTCTCTTCAACATCCACTGGGTT GTGATGTGTGTAAAACAACTCTCTTCAACATCCACTGGGTT < 41bp 1 0.0936673256741547 1 0.058974951505661 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137735614 chr5:137735605 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_23403 0 0 1 0 2 Nucleus 1 0.500231643938947 1 0.999536712122106 hm5C_site_24242 DeepMRMD:1;iRNA_m5C:0.999536712122106 24243 chr17 73564865 73564865 1 + G C HNSC 73564860 + 73564840 73564880 41 TCTCTTTTTCTAGGAGTGGCCAATTGATGGTGGCACCAGCC TCTCTTTTTCTAGGAGTGGCCAATTCATGGTGGCACCAGCC < 41bp 1 0.0638271862355193 1 0.488553166389465 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73564860 chr17:73564865 nonsynonymous SNV 0.709 3 26 hm5C_associated_SNPs_23404 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24243 DeepMRMD:1;iRNA_m5C:0.999536712157815 24244 chr15 63481934 63481934 1 + C T HNSC 63481916 + 63481896 63481936 41 CTGTTCCGCTTCTCAGAGGACGCCTTCAACACCACCTTCAT CTGTTCCGCTTCTCAGAGGACGCCTTCAACACCACCTTTAT < 41bp 1 0.570976887214416 1 0.143310725688934 experiment 0.858046225571168 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB8B ENSG00000166128 CDS Human protein_coding chr15:63481916 chr15:63481934 synonymous SNV . 0 39 hm5C_associated_SNPs_23405 0 0 1 0 1 Nucleus 1 0.500231643921523 1 0.999536712156955 hm5C_site_24244 DeepMRMD:1;iRNA_m5C:0.999536712156955 24245 chr1 109643008 109643008 1 + G A HNSC 109642989 + 109642969 109643009 41 CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCGGA CGCCCCTCCTCCCGCTTACACTTTGATCTTATTTGATCGAA < 41bp 1 0.249340083674405 1 0.0526989102363586 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642989 chr1:109643008 . . 0 40 hm5C_associated_SNPs_23406 0 0 1 4 0 unknown 1 0.500231643918908 1 0.999536712162185 hm5C_site_24245 DeepMRMD:1;iRNA_m5C:0.999536712162185 24246 chr1 109643008 109643008 1 + G A HNSC 109642996 + 109642976 109643016 41 CCTCCCGCTTACACTTTGATCTTATTTGATCGGATCGTGAC CCTCCCGCTTACACTTTGATCTTATTTGATCGAATCGTGAC < 41bp 1 0.239366218554663 1 0.0308262407779694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642996 chr1:109643008 . . 0 33 hm5C_associated_SNPs_23407 0 0 1 4 0 unknown 1 0.500231805691875 1 0.999536388616251 hm5C_site_24246 DeepMRMD:1;iRNA_m5C:0.999536388616251 24247 chr1 109643008 109643008 1 + G A HNSC 109643006 + 109642986 109643026 41 ACACTTTGATCTTATTTGATCGGATCGTGACCCCAGCCCCG ACACTTTGATCTTATTTGATCGAATCGTGACCCCAGCCCCG < 41bp 1 0.390534008499263 1 0.335484355688095 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643006 chr1:109643008 . . 0 23 hm5C_associated_SNPs_23408 0 0 1 4 0 unknown 1 0.500234963366564 1 0.999530073266872 hm5C_site_24247 DeepMRMD:1;iRNA_m5C:0.999530073266872 24248 chr1 109643008 109643008 1 + G A HNSC 109643011 + 109642991 109643031 41 TTGATCTTATTTGATCGGATCGTGACCCCAGCCCCGCCGGG TTGATCTTATTTGATCGAATCGTGACCCCAGCCCCGCCGGG < 41bp 1 0.629698890483315 1 0.539161145687103 experiment 0.74060221903337 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643011 chr1:109643008 . . 0 18 hm5C_associated_SNPs_23409 0 0 1 4 0 unknown 1 0.500231643916479 0.921677708625794 0.999536712167042 hm5C_site_24248 DeepMRMD:0.921677708625794;iRNA_m5C:0.999536712167042 24249 chr1 109643008 109643008 1 + G A HNSC 109643018 + 109642998 109643038 41 TATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCC TATTTGATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCC < 41bp 1 0.342390707251742 1 0.503829181194305 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643018 chr1:109643008 . . 0 11 hm5C_associated_SNPs_23410 0 0 1 4 0 unknown 1 0.500231643921092 0.99234163761139 0.999536712157815 hm5C_site_24249 DeepMRMD:0.99234163761139;iRNA_m5C:0.999536712157815 24250 chr1 109643008 109643008 1 + G A HNSC 109643019 + 109642999 109643039 41 ATTTGATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCG ATTTGATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCG < 41bp 1 0.562651814670758 1 0.313721239566803 experiment 0.874696370658484 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643019 chr1:109643008 . . 0 10 hm5C_associated_SNPs_23411 0 0 1 4 0 unknown 1 0.500231643589096 1 0.999536712821808 hm5C_site_24250 DeepMRMD:1;iRNA_m5C:0.999536712821808 24251 chr1 109643008 109643008 1 + G A HNSC 109643023 + 109643003 109643043 41 GATCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT GATCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAAT < 41bp 1 0.337972319653799 1 0.158858478069305 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643023 chr1:109643008 . . 0 6 hm5C_associated_SNPs_23412 0 0 1 4 0 unknown 1 0.500194064023406 1 0.999611871953189 hm5C_site_24251 DeepMRMD:1;iRNA_m5C:0.999611871953189 24252 chr1 109643008 109643008 1 + G A HNSC 109643025 + 109643005 109643045 41 TCGGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA TCGAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGA < 41bp 1 0.690950042152631 1 0.491268068552017 experiment 0.618099915694739 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643025 chr1:109643008 . . 0 4 hm5C_associated_SNPs_23413 0 0 1 4 0 unknown 1 0.500194258361054 1 0.999611483277892 hm5C_site_24252 DeepMRMD:1;iRNA_m5C:0.999611483277892 24253 chr1 109643008 109643008 1 + G A HNSC 109643027 + 109643007 109643047 41 GGATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA GAATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAA < 41bp 1 0.357225090333147 1 0.375453174114227 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643027 chr1:109643008 . . 0 2 hm5C_associated_SNPs_23414 0 0 1 4 0 unknown 1 0.500231643919783 1 0.999536712160435 hm5C_site_24253 DeepMRMD:1;iRNA_m5C:0.999536712160435 24254 chr1 109643008 109643008 1 + G A HNSC 109643028 + 109643008 109643048 41 GATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA AATCGTGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAA < 41bp 1 0.566937083442849 1 0.588861763477325 experiment 0.866125833114302 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643028 chr1:109643008 . . 0 1 hm5C_associated_SNPs_23415 0 0 1 4 0 unknown 1 0.500231643921061 0.82227647304535 0.999536712157878 hm5C_site_24254 DeepMRMD:0.82227647304535;iRNA_m5C:0.999536712157878 24255 chr12 132325377 132325377 1 + G A HNSC 132325361 + 132325341 132325381 41 CACCACACCGCCGGGGACACCCACTTTGACGATGACGAGGC CACCACACCGCCGGGGACACCCACTTTGACGATGACAAGGC < 41bp 1 0.1942027208955 1 0.175704210996628 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325361 chr12:132325377 nonsynonymous SNV 0.003 4 37 hm5C_associated_SNPs_23416 0 0 1 0 1 Cytosol 1 0.500231643752843 1 0.999536712494314 hm5C_site_24255 DeepMRMD:1;iRNA_m5C:0.999536712494314 24256 chr8 30332300 30332300 1 + G C HNSC 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT GCACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT < 41bp 1 0.0747154332295687 1 0.0420100092887878 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332300 synonymous SNV . 0 2 hm5C_associated_SNPs_23417 0 0 1 0 2 Nucleus 1 0.500231643921075 1 0.99953671215785 hm5C_site_24256 DeepMRMD:1;iRNA_m5C:0.99953671215785 24257 chr9 72003134 72003134 1 + C T HNSC 72003140 + 72003120 72003160 41 ACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTGAGAT ACTGGATCTGGCTGTAGTGACTCTGAGGAGAGGCTTGAGAT < 41bp 1 0.547923463817118 1 0.342570096254349 experiment 0.904153072365764 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:72003140 chr9:72003134 nonsynonymous SNV 0.969 1 15 hm5C_associated_SNPs_23418 0 0 0 0 1 cytosol 1 0.500232735916558 1 0.999534528166885 hm5C_site_24257 DeepMRMD:1;iRNA_m5C:0.999534528166885 24258 chr7 5643496 5643496 1 + G C HNSC 5643505 + 5643485 5643525 41 CTGGGACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATC CTGGGACAGGGCACTCAGAGCTCTTCCTCATGAAGCTCATC < 41bp 1 0.104539438639524 1 0.0604011416435242 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643505 chr7:5643496 nonsynonymous SNV 0.252 1 12 hm5C_associated_SNPs_23419 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_24258 DeepMRMD:1;iRNA_m5C:0.999536712157813 24259 chr7 5643496 5643496 1 + G C HNSC 5643510 + 5643490 5643530 41 ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACCG ACAGGGCACTCAGAGCTCTTCCTCATGAAGCTCATCAACCG < 41bp 1 0.324362841963497 1 0.0590589940547943 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643510 chr7:5643496 nonsynonymous SNV 0.252 1 7 hm5C_associated_SNPs_23420 0 0 1 0 1 Ribosome 1 0.500231281452226 1 0.999537437095548 hm5C_site_24259 DeepMRMD:1;iRNA_m5C:0.999537437095548 24260 chr1 22336270 22336270 1 + G T HNSC 22336262 + 22336242 22336282 41 CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG CTGGCAGGTCCACGGTGTGACCAGCTTTTTTTCTGCCTTTG < 41bp 1 0.277608383913837 1 0.130176842212677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336262 chr1:22336270 nonsynonymous SNV 0.595 3 29 hm5C_associated_SNPs_23421 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920919 1 0.999536712158162 hm5C_site_24260 DeepMRMD:1;iRNA_m5C:0.999536712158162 24261 chr1 22336270 22336270 1 + G T HNSC 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TGGCAGGTCCACGGTGTGACCAGCTTTTTTTCTGCCTTTGG < 41bp 1 0.608072269404615 1 0.292660534381866 experiment 0.783855461190769 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336270 nonsynonymous SNV 0.595 3 28 hm5C_associated_SNPs_23422 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921281 1 0.999536712157438 hm5C_site_24261 DeepMRMD:1;iRNA_m5C:0.999536712157438 24262 chr1 22336270 22336270 1 + G T HNSC 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCACGGTGTGACCAGCTTTTTTTCTGCCTTTGGCTG < 41bp 1 0.0677079804713907 1 0.0431039929389954 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336270 nonsynonymous SNV 0.595 3 25 hm5C_associated_SNPs_23423 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643919975 1 0.999536712160051 hm5C_site_24262 DeepMRMD:1;iRNA_m5C:0.999536712160051 24263 chr1 22336270 22336270 1 + G T HNSC 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA CGGTGTGACCAGCTTTTTTTCTGCCTTTGGCTGCAACTTCA < 41bp 1 0.652681934740926 1 0.163330376148224 experiment 0.694636130518149 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336270 nonsynonymous SNV 0.595 3 17 hm5C_associated_SNPs_23424 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644329267 1 0.999536711341465 hm5C_site_24263 DeepMRMD:1;iRNA_m5C:0.999536711341465 24264 chr1 22336270 22336270 1 + G T HNSC 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGACCAGCTTTTTTTCTGCCTTTGGCTGCAACTTCATCT < 41bp 1 0.0371843386502488 1 0.0245248973369598 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336270 nonsynonymous SNV 0.595 3 14 hm5C_associated_SNPs_23425 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643917907 1 0.999536712164186 hm5C_site_24264 DeepMRMD:1;iRNA_m5C:0.999536712164186 24265 chr1 22336270 22336270 1 + G T HNSC 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGACCAGCTTTTTTTCTGCCTTTGGCTGCAACTTCATCTG < 41bp 1 0.277310439753024 1 0.0740772783756256 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336270 nonsynonymous SNV 0.595 3 13 hm5C_associated_SNPs_23426 0 0 0 0 1 Endoplasmic reticulum 1 0.500232543645305 1 0.999534912709389 hm5C_site_24265 DeepMRMD:1;iRNA_m5C:0.999534912709389 24266 chr1 22336270 22336270 1 + G T HNSC 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTTTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC < 41bp 1 0.226950041310072 1 0.0732473433017731 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336270 nonsynonymous SNV 0.595 3 4 hm5C_associated_SNPs_23428 0 0 0 0 1 Endoplasmic reticulum 1 0.50023175281242 1 0.999536494375159 hm5C_site_24266 DeepMRMD:1;iRNA_m5C:0.999536494375159 24267 chr1 22336270 22336270 1 + G T HNSC 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT TTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT < 41bp 1 0.551775652228795 1 0.782853722572327 experiment 0.896448695542411 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336270 nonsynonymous SNV 0.595 3 1 hm5C_associated_SNPs_23429 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643922423 0.434292554855346 0.999536712155154 hm5C_site_24267 DeepMRMD:0.434292554855346;iRNA_m5C:0.999536712155154 24268 chr19 18729276 18729276 1 + G C HNSC 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCCTGGTGACCCCGCCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.190507390078409 1 0.230303764343262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729276 nonsynonymous SNV 0.033 4 13 hm5C_associated_SNPs_23430 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24268 DeepMRMD:1;iRNA_m5C:0.999536712157815 24269 chr1 36028893 36028893 1 + G C HNSC 36028874 + 36028854 36028894 41 GATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGT GATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAACT < 41bp 1 0.0574892740992142 1 0.10185369849205 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028874 chr1:36028893 nonsynonymous SNV 0.999 1 40 hm5C_associated_SNPs_23431 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921065 1 0.999536712157869 hm5C_site_24269 DeepMRMD:1;iRNA_m5C:0.999536712157869 24270 chr1 36028893 36028893 1 + G C HNSC 36028876 + 36028856 36028896 41 TCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGTAT TCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAACTAT < 41bp 1 0.0266134554779177 1 0.0817557573318481 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028876 chr1:36028893 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_23432 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643919829 1 0.999536712160341 hm5C_site_24270 DeepMRMD:1;iRNA_m5C:0.999536712160341 24271 chr17 4797380 4797380 1 + G A HNSC 4797367 + 4797347 4797387 41 ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG ACCCAGCCCCCATACGGGGGCGGCACCATGGTGATCCAGCG < 41bp 1 0.416408810300008 1 0.149186849594116 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797367 chr17:4797380 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_23433 0 0 1 0 2 Ribosome 1 0.500231644063924 1 0.999536711872151 hm5C_site_24271 DeepMRMD:1;iRNA_m5C:0.999536711872151 24272 chrX 150156302 150156302 1 + C T HNSC 150156311 + 150156291 150156331 41 AAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGG AAAGGGTCCTGTTAAAGTTGCCCGGAAAAAGGTGGAAGAGG < 41bp 1 0.442725930698929 1 0.108238399028778 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156311 chrX:150156302 nonsynonymous SNV 0.992 1 12 hm5C_associated_SNPs_23434 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24272 DeepMRMD:1;iRNA_m5C:0.999536712157815 24273 chrX 150156302 150156302 1 + C T HNSC 150156312 + 150156292 150156332 41 AAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA AAGGGTCCTGTTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA < 41bp 1 0.648866604615123 1 0.52464497089386 experiment 0.702266790769754 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156312 chrX:150156302 nonsynonymous SNV 0.992 1 11 hm5C_associated_SNPs_23435 0 0 1 0 1 Ribosome 1 0.500231644999085 0.95071005821228 0.999536710001831 hm5C_site_24273 DeepMRMD:0.95071005821228;iRNA_m5C:0.999536710001831 24274 chrX 150156302 150156302 1 + C T HNSC 150156313 + 150156293 150156333 41 AGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA AGGGTCCTGTTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA < 41bp 1 0.675385332223843 1 0.59221351146698 experiment 0.649229335552314 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156313 chrX:150156302 nonsynonymous SNV 0.992 1 10 hm5C_associated_SNPs_23436 0 0 1 0 1 Ribosome 1 0.500231643921092 0.81557297706604 0.999536712157815 hm5C_site_24274 DeepMRMD:0.81557297706604;iRNA_m5C:0.999536712157815 24275 chr22 31485785 31485785 1 + T C HNSC 31485804 + 31485784 31485824 41 CTGCGAGCCCCACCTGGGAGCACATCCAGCTCACCTGCCTC CCGCGAGCCCCACCTGGGAGCACATCCAGCTCACCTGCCTC < 41bp 1 0.191214899000533 1 0.166716068983078 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMTN ENSG00000183963 CDS Human protein_coding chr22:31485804 chr22:31485785 nonsynonymous SNV 0.810 3 2 hm5C_associated_SNPs_23437 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24275 DeepMRMD:1;iRNA_m5C:0.999536712157815 24276 chr1 46739822 46739822 1 + C T HNSC 46739819 + 46739799 46739839 41 TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGAT TCCCCCTTCAGGTACTTATACGTTCGCCTGGATGGCACGAT < 41bp 1 0.0738481254295178 1 0.0704800486564636 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739819 chr1:46739822 synonymous SNV . 0 24 hm5C_associated_SNPs_23438 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24276 DeepMRMD:1;iRNA_m5C:0.999536712157815 24277 chr16 31927613 31927613 1 + A T HNSC 31927630 + 31927610 31927650 41 AAGACATACTGGAGAGAGACCCTACAAATGTGATGAATGTG AAGTCATACTGGAGAGAGACCCTACAAATGTGATGAATGTG < 41bp 1 0.0292770842013921 1 0.140246093273163 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF267 ENSG00000185947 CDS Human protein_coding chr16:31927630 chr16:31927613 nonsynonymous SNV 0.120 0 4 hm5C_associated_SNPs_23439 0 0 1 0 0 chromatin 1 0.50023164392814 1 0.99953671214372 hm5C_site_24277 DeepMRMD:1;iRNA_m5C:0.99953671214372 24278 chr5 908529 908529 1 + C T HNSC 908541 + 908521 908561 41 TCAGATGCCATCCGCGTGGTCAATGCTGTCTTGACCCAAAT TCAGATGCTATCCGCGTGGTCAATGCTGTCTTGACCCAAAT < 41bp 1 0.388444528326143 1 0.218799561262131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908541 chr5:908529 synonymous SNV . 0 9 hm5C_associated_SNPs_23440 0 0 1 0 2 Ribosome 1 0.500231643754548 1 0.999536712490904 hm5C_site_24278 DeepMRMD:1;iRNA_m5C:0.999536712490904 24279 chr20 31021439 31021439 1 + G A HNSC 31021436 + 31021416 31021456 41 CAGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCT CAGCACCCGACCTGGAGGGTCCCAAATTCCCAGTTGAGTCT < 41bp 1 0.30002235965762 1 0.173005104064941 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021436 chr20:31021439 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_23441 0 0 1 0 0 Nucleus 1 0.500231643923804 1 0.999536712152392 hm5C_site_24279 DeepMRMD:1;iRNA_m5C:0.999536712152392 24280 chr20 31021439 31021439 1 + G A HNSC 31021437 + 31021417 31021457 41 AGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCTG AGCACCCGACCTGGAGGGTCCCAAATTCCCAGTTGAGTCTG < 41bp 1 0.39028528606266 1 0.199928432703018 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021437 chr20:31021439 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_23442 0 0 1 0 0 Nucleus 1 0.500231643921118 1 0.999536712157765 hm5C_site_24280 DeepMRMD:1;iRNA_m5C:0.999536712157765 24281 chr19 2097286 2097286 1 + T G HNSC 2097268 + 2097248 2097288 41 CAGCCCGGGAGAAGCTGGACCAAGTGGCGACAGCAGTGTAC CAGCCCGGGAGAAGCTGGACCAAGTGGCGACAGCAGTGGAC < 41bp 1 0.629666785011191 1 0.540236353874207 experiment 0.740666429977619 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IZUMO4 ENSG00000099840 CDS Human protein_coding chr19:2097268 chr19:2097286 nonsynonymous SNV 0.865 2 39 hm5C_associated_SNPs_23443 0 0 1 0 2 Cytosol 1 0.500255210974134 0.919527292251586 0.999489578051733 hm5C_site_24281 DeepMRMD:0.919527292251586;iRNA_m5C:0.999489578051733 24282 chr10 94757357 94757357 1 + G A HNSC 94757363 + 94757343 94757383 41 AGTTTAACTTAGATGTCATACAGTGTGAATGTAAGTACTAT AGTTTAACTTAGATATCATACAGTGTGAATGTAAGTACTAT < 41bp 1 0.222287563143649 1 0.134468615055084 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94757363 chr10:94757357 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_23444 0 0 1 1 1 Cytosol 1 0.500231643318069 1 0.999536713363863 hm5C_site_24282 DeepMRMD:1;iRNA_m5C:0.999536713363863 24283 chr6 15496739 15496739 1 + G A HNSC 15496746 + 15496726 15496766 41 GGGCGGCAGCTGCGGGAGGGCCTGCAGCTGCGGGAGGGGCT GGGCGGCAGCTGCAGGAGGGCCTGCAGCTGCGGGAGGGGCT < 41bp 1 0.0580030312889118 1 0.155485391616821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15496746 chr6:15496739 nonsynonymous SNV 0.990 1 14 hm5C_associated_SNPs_23445 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24283 DeepMRMD:1;iRNA_m5C:0.999536712157815 24284 chr10 17276720 17276720 1 + G A HNSC 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT AGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT < 41bp 1 0.451634714663675 1 0.763182282447815 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276720 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_23447 0 0 1 0 2 Ribosome 1 0.500231684404884 0.47363543510437 0.999536631190231 hm5C_site_24284 DeepMRMD:0.47363543510437;iRNA_m5C:0.999536631190231 24285 chr2 27663754 27663754 1 + C T HNSC 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGACATCACCTGTCGTGTCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.231782453464096 1 0.0164843797683716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663754 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_23448 0 0 0 0 2 Cytosol 1 0.500231848181796 1 0.999536303636407 hm5C_site_24285 DeepMRMD:1;iRNA_m5C:0.999536303636407 24286 chr3 44442777 44442777 1 + A G HNSC 44442795 + 44442775 44442815 41 TTATTCTCACCAAAGCTCAGCAGGCAAGAGAGAACATGAAA TTGTTCTCACCAAAGCTCAGCAGGCAAGAGAGAACATGAAA < 41bp 1 0.321441116227855 1 0.182885199785233 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCAIM ENSG00000179152 CDS Human protein_coding chr3:44442795 chr3:44442777 nonsynonymous SNV 0.765 2 3 hm5C_associated_SNPs_23449 0 0 1 0 1 Cytosol 1 0.500232516162551 1 0.999534967674897 hm5C_site_24286 DeepMRMD:1;iRNA_m5C:0.999534967674897 24287 chr11 66411238 66411238 1 + T C HNSC 66411252 + 66411232 66411272 41 TATAATTACGCAGAGCAGACCCTGTCCCAGCTGCCACAAGT TATAATCACGCAGAGCAGACCCTGTCCCAGCTGCCACAAGT < 41bp 1 0.0557226507039943 1 0.0271115303039551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66411252 chr11:66411238 nonsynonymous SNV 0.989 2 7 hm5C_associated_SNPs_23450 0 0 1 0 0 unknown 1 0.500231630829105 1 0.999536738341791 hm5C_site_24287 DeepMRMD:1;iRNA_m5C:0.999536738341791 24288 chr20 25205869 25205869 1 + G A HNSC 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACACAGCCGCAAAGCAGCCCCTTCTCATGCATGGACCT < 41bp 1 0.177453346087712 1 0.0213847458362579 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205869 nonsynonymous SNV 0.001 1 15 hm5C_associated_SNPs_23451 0 0 1 0 3 Endoplasmic reticulum 1 0.500231640450071 1 0.999536719099858 hm5C_site_24288 DeepMRMD:1;iRNA_m5C:0.999536719099858 24289 chr17 38142913 38142913 1 + A G HNSC 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTGTCTCCAACTCCTCGTGGTCATCTTCATGATGAA < 41bp 1 0.414276087679778 1 0.146660327911377 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142913 nonsynonymous SNV 0.968 5 8 hm5C_associated_SNPs_23452 0 0 1 0 2 Ribosome 1 0.50021030008504 1 0.999579399829919 hm5C_site_24289 DeepMRMD:1;iRNA_m5C:0.999579399829919 24290 chr19 54621975 54621975 1 + T C HNSC 54621957 + 54621937 54621977 41 TTCTCCTTTCCTACAGTTTGCTGAGATTATGATGAAGATTG TTCTCCTTTCCTACAGTTTGCTGAGATTATGATGAAGACTG < 41bp 1 0.304395700490145 1 0.134231626987457 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54621957 chr19:54621975 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_23453 0 0 1 0 2 Cytosol 1 0.500231643872792 1 0.999536712254417 hm5C_site_24290 DeepMRMD:1;iRNA_m5C:0.999536712254417 24291 chr3 196545014 196545014 1 + A T HNSC 196545016 + 196544996 196545036 41 ACTTTTGGGAATGGAAGGATCTGTTAAGCTCAGTGAGTAAC ACTTTTGGGAATGGAAGGTTCTGTTAAGCTCAGTGAGTAAC < 41bp 1 0.234731029949997 1 0.0833050012588501 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196545016 chr3:196545014 synonymous SNV . 0 19 hm5C_associated_SNPs_23454 0 0 1 0 1 Ribosome 1 0.500231643922447 1 0.999536712155105 hm5C_site_24291 DeepMRMD:1;iRNA_m5C:0.999536712155105 24292 chr2 66691249 66691249 1 + G A HNSC 66691259 + 66691239 66691279 41 AGCCCTCTTGGAACAGAGATCATGATGACACGGCATCTACT AGCCCTCTTGAAACAGAGATCATGATGACACGGCATCTACT < 41bp 1 0.503667307278218 1 0.196590423583984 experiment 0.992665385443564 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691259 chr2:66691249 stopgain 1.000 1 11 hm5C_associated_SNPs_23455 0 0 0 1 1 chromatin 1 0.500231643996218 1 0.999536712007564 hm5C_site_24292 DeepMRMD:1;iRNA_m5C:0.999536712007564 24293 chr1 240492727 240492727 1 + T A HNSC 240492713 + 240492693 240492733 41 CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCACAATTC < 41bp 1 0.493159441343642 1 0.842207551002502 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FMN2 ENSG00000155816 CDS Human protein_coding chr1:240492713 chr1:240492727 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_23456 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644122033 0.315584897994996 0.999536711755934 hm5C_site_24293 DeepMRMD:0.315584897994996;iRNA_m5C:0.999536711755934 24294 chr4 113189405 113189405 1 + C T HNSC 113189402 + 113189382 113189422 41 GAAGACTGGAAGTAATCCTACATCAGCCTCTGATGATTCCA GAAGACTGGAAGTAATCCTACATTAGCCTCTGATGATTCCA < 41bp 1 0.190351339373763 1 0.0392666459083557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP1AR ENSG00000138660 CDS Human protein_coding chr4:113189402 chr4:113189405 nonsynonymous SNV 0.861 4 24 hm5C_associated_SNPs_23457 0 0 1 0 0 Ribosome 1 0.500231644711499 1 0.999536710577002 hm5C_site_24294 DeepMRMD:1;iRNA_m5C:0.999536710577002 24295 chr9 112705583 112705583 1 + G A HNSC 112705590 + 112705570 112705610 41 TGAGCTTGTGTCCGGGAGGCCGGTCTCAGACACCACAGAGC TGAGCTTGTGTCCAGGAGGCCGGTCTCAGACACCACAGAGC < 41bp 1 0.078238036403087 1 0.253633558750153 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALM2 ENSG00000157654;ENSG00000243444 CDS Human other chr9:112705590 chr9:112705583 nonsynonymous SNV 0.849 3 14 hm5C_associated_SNPs_23458 0 0 0 0 1 exosome 1 0.500231681572324 1 0.999536636855353 hm5C_site_24295 DeepMRMD:1;iRNA_m5C:0.999536636855353 24296 chr19 49652940 49652940 1 + C T HNSC 49652931 + 49652911 49652951 41 TCGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCC TCGTTCGGCTGCAGCGGGAGCCCTGGGCTTTCCGGGGCTCC < 41bp 1 0.113774318617225 1 0.146800011396408 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652931 chr19:49652940 nonsynonymous SNV 0.993 1 30 hm5C_associated_SNPs_23459 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24296 DeepMRMD:1;iRNA_m5C:0.999536712157815 24297 chr19 49652940 49652940 1 + C T HNSC 49652932 + 49652912 49652952 41 CGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCCC CGTTCGGCTGCAGCGGGAGCCCTGGGCTTTCCGGGGCTCCC < 41bp 1 0.206512626787666 1 0.698428392410278 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652932 chr19:49652940 nonsynonymous SNV 0.993 1 29 hm5C_associated_SNPs_23460 0 0 0 0 1 Cytosol 1 0.500231643921092 0.603143215179444 0.999536712157815 hm5C_site_24297 DeepMRMD:0.603143215179444;iRNA_m5C:0.999536712157815 24298 chr19 49652940 49652940 1 + C T HNSC 49652948 + 49652928 49652968 41 GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG GAGCCCTGGGCTTTCCGGGGCTCCCTCTCCGCAAGCTGCAG < 41bp 1 0.0816343000315051 1 0.119139701128006 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652948 chr19:49652940 nonsynonymous SNV 0.993 1 13 hm5C_associated_SNPs_23461 0 0 0 0 1 Cytosol 1 0.500231643697752 1 0.999536712604497 hm5C_site_24298 DeepMRMD:1;iRNA_m5C:0.999536712604497 24299 chr19 49652940 49652940 1 + C T HNSC 49652950 + 49652930 49652970 41 GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC GCCCTGGGCTTTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC < 41bp 1 0.0616728706736312 1 0.0577175915241241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652950 chr19:49652940 nonsynonymous SNV 0.993 1 11 hm5C_associated_SNPs_23462 0 0 0 0 1 Cytosol 1 0.500231643941248 1 0.999536712117503 hm5C_site_24299 DeepMRMD:1;iRNA_m5C:0.999536712117503 24300 chr19 49652940 49652940 1 + C T HNSC 49652951 + 49652931 49652971 41 CCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCA CCCTGGGCTTTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCA < 41bp 1 0.0448314312186465 1 0.0351525247097015 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652951 chr19:49652940 nonsynonymous SNV 0.993 1 10 hm5C_associated_SNPs_23463 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24300 DeepMRMD:1;iRNA_m5C:0.999536712157815 24301 chr19 49652940 49652940 1 + C T HNSC 49652952 + 49652932 49652972 41 CCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG CCTGGGCTTTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG < 41bp 1 0.238628525338815 1 0.575424015522003 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652952 chr19:49652940 nonsynonymous SNV 0.993 1 9 hm5C_associated_SNPs_23464 0 0 0 0 1 Cytosol 1 0.500231646660541 0.849151968955994 0.999536706678918 hm5C_site_24301 DeepMRMD:0.849151968955994;iRNA_m5C:0.999536706678918 24302 chr17 40817761 40817761 1 + C T HNSC 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TTATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC < 41bp 1 0.331542069099308 1 0.0369589626789093 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817761 synonymous SNV . 0 2 hm5C_associated_SNPs_23465 0 0 0 0 2 Cytosol 1 0.500231731646841 1 0.999536536706319 hm5C_site_24302 DeepMRMD:1;iRNA_m5C:0.999536536706319 24303 chr19 49652942 49652942 1 + C T HNSC 49652931 + 49652911 49652951 41 TCGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCC TCGTTCGGCTGCAGCGGGAGCCCTGGGCTCTTCGGGGCTCC < 41bp 1 0.153503619472866 1 0.0707582831382751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652931 chr19:49652942 nonsynonymous SNV 0.987 0 32 hm5C_associated_SNPs_23466 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24303 DeepMRMD:1;iRNA_m5C:0.999536712157815 24304 chr19 49652942 49652942 1 + C T HNSC 49652932 + 49652912 49652952 41 CGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCCC CGTTCGGCTGCAGCGGGAGCCCTGGGCTCTTCGGGGCTCCC < 41bp 1 0.178234573153079 1 0.393839955329895 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652932 chr19:49652942 nonsynonymous SNV 0.987 0 31 hm5C_associated_SNPs_23467 0 0 0 0 1 Cytosol 1 0.500231644636818 1 0.999536710726364 hm5C_site_24304 DeepMRMD:1;iRNA_m5C:0.999536710726364 24305 chr19 49652942 49652942 1 + C T HNSC 49652948 + 49652928 49652968 41 GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG GAGCCCTGGGCTCTTCGGGGCTCCCTCTCCGCAAGCTGCAG < 41bp 1 0.0810413900026414 1 0.107333481311798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652948 chr19:49652942 nonsynonymous SNV 0.987 0 15 hm5C_associated_SNPs_23469 0 0 0 0 1 Cytosol 1 0.50023163302813 1 0.999536733943739 hm5C_site_24305 DeepMRMD:1;iRNA_m5C:0.999536733943739 24306 chr19 49652942 49652942 1 + C T HNSC 49652950 + 49652930 49652970 41 GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC GCCCTGGGCTCTTCGGGGCTCCCTCTCCGCAAGCTGCAGCC < 41bp 1 0.0594528736727868 1 0.047562450170517 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652950 chr19:49652942 nonsynonymous SNV 0.987 0 13 hm5C_associated_SNPs_23470 0 0 0 0 1 Cytosol 1 0.500231643921101 1 0.999536712157798 hm5C_site_24306 DeepMRMD:1;iRNA_m5C:0.999536712157798 24307 chr19 49652942 49652942 1 + C T HNSC 49652951 + 49652931 49652971 41 CCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCA CCCTGGGCTCTTCGGGGCTCCCTCTCCGCAAGCTGCAGCCA < 41bp 1 0.0385618713017915 1 0.0451708436012268 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652951 chr19:49652942 nonsynonymous SNV 0.987 0 12 hm5C_associated_SNPs_23471 0 0 0 0 1 Cytosol 1 0.500231644000485 1 0.99953671199903 hm5C_site_24307 DeepMRMD:1;iRNA_m5C:0.99953671199903 24308 chr19 49652942 49652942 1 + C T HNSC 49652952 + 49652932 49652972 41 CCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG CCTGGGCTCTTCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG < 41bp 1 0.232389090686947 1 0.591199576854706 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652952 chr19:49652942 nonsynonymous SNV 0.987 0 11 hm5C_associated_SNPs_23472 0 0 0 0 1 Cytosol 1 0.500231643786661 0.817600846290588 0.999536712426679 hm5C_site_24308 DeepMRMD:0.817600846290588;iRNA_m5C:0.999536712426679 24309 chr5 32090179 32090179 1 + G A HNSC 32090169 + 32090149 32090189 41 AGAAACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCT AGAAACAGCATTCCAGGGGGCCCCTCGGGGAAGGACCATCT < 41bp 1 0.0348632449143317 1 0.0527174472808838 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090169 chr5:32090179 nonsynonymous SNV 0.065 1 31 hm5C_associated_SNPs_23473 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24309 DeepMRMD:1;iRNA_m5C:0.999536712157815 24310 chr5 32090179 32090179 1 + G A HNSC 32090171 + 32090151 32090191 41 AAACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCTCT AAACAGCATTCCAGGGGGCCCCTCGGGGAAGGACCATCTCT < 41bp 1 0.0456689786865177 1 0.15199601650238 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090171 chr5:32090179 nonsynonymous SNV 0.065 1 29 hm5C_associated_SNPs_23474 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24310 DeepMRMD:1;iRNA_m5C:0.999536712157815 24311 chr5 32090179 32090179 1 + G A HNSC 32090172 + 32090152 32090192 41 AACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCTCTA AACAGCATTCCAGGGGGCCCCTCGGGGAAGGACCATCTCTA < 41bp 1 0.41184889913908 1 0.887703895568848 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090172 chr5:32090179 nonsynonymous SNV 0.065 1 28 hm5C_associated_SNPs_23475 0 0 0 0 0 chromatin 1 0.500231643921093 0.224592208862304 0.999536712157814 hm5C_site_24311 DeepMRMD:0.224592208862304;iRNA_m5C:0.999536712157814 24312 chr5 32090179 32090179 1 + G A HNSC 32090174 + 32090154 32090194 41 CAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCTCTACT CAGCATTCCAGGGGGCCCCTCGGGGAAGGACCATCTCTACT < 41bp 1 0.491547298333415 1 0.926560938358307 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090174 chr5:32090179 nonsynonymous SNV 0.065 1 26 hm5C_associated_SNPs_23476 0 0 0 0 0 chromatin 1 0.50023164392148 0.146878123283386 0.999536712157039 hm5C_site_24312 DeepMRMD:0.146878123283386;iRNA_m5C:0.999536712157039 24313 chr7 129093089 129093089 1 + C T HNSC 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTTAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC < 41bp 1 0.623012987534434 1 0.188028156757355 experiment 0.753974024931132 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093089 nonsynonymous SNV 0.998 0 4 hm5C_associated_SNPs_23477 0 0 1 0 2 Nucleus 1 0.500231643785584 1 0.999536712428832 hm5C_site_24313 DeepMRMD:1;iRNA_m5C:0.999536712428832 24314 chr19 10897294 10897294 1 + A T HNSC 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGTGCCAG < 41bp 1 0.198656608070019 1 0.157701969146729 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897294 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_23479 0 0 1 0 2 Nucleus 1 0.500231643921217 1 0.999536712157566 hm5C_site_24314 DeepMRMD:1;iRNA_m5C:0.999536712157566 24315 chr16 83948911 83948911 1 + C G HNSC 83948906 + 83948886 83948926 41 AGAACGGGGCGGTGCTGTGGCGCATCAACTGGATGGCGGAT AGAACGGGGCGGTGCTGTGGCGCATGAACTGGATGGCGGAT < 41bp 1 0.560366033989721 1 0.288347840309143 experiment 0.879267932020558 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MLYCD ENSG00000103150 CDS Human protein_coding chr16:83948906 chr16:83948911 nonsynonymous SNV 0.997 5 26 hm5C_associated_SNPs_23480 0 0 0 0 0 nucleolus 1 0.500231643918327 1 0.999536712163347 hm5C_site_24315 DeepMRMD:1;iRNA_m5C:0.999536712163347 24316 chr6 31601231 31601231 1 + G A HNSC 31601218 + 31601198 31601238 41 CCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTGGACCAAG CCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTAGACCAAG < 41bp 1 0.282103854566859 1 0.109017789363861 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31601218 chr6:31601231 synonymous SNV . 0 34 hm5C_associated_SNPs_23481 0 0 1 0 1 Ribosome 1 0.500231665441637 1 0.999536669116725 hm5C_site_24316 DeepMRMD:1;iRNA_m5C:0.999536669116725 24317 chr12 6618931 6618931 1 + A C HNSC 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCCCTT < 41bp 1 0.143352283254319 1 0.0866802334785461 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618931 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_23482 0 0 1 0 2 Nucleus 1 0.500231643904889 1 0.999536712190223 hm5C_site_24317 DeepMRMD:1;iRNA_m5C:0.999536712190223 24318 chr7 44685013 44685013 1 + C G HNSC 44685003 + 44684983 44685023 41 CAGAGTCCCCTTCCCCTGAGCCGAGGCTCCCTGGCTGCTGT CAGAGTCCCCTTCCCCTGAGCCGAGGCTCCGTGGCTGCTGT < 41bp 1 0.264580928121779 1 0.678133726119995 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44685003 chr7:44685013 nonsynonymous SNV 0.846 0 31 hm5C_associated_SNPs_23483 0 0 1 0 0 Nucleus 1 0.50023164370164 0.64373254776001 0.999536712596719 hm5C_site_24318 DeepMRMD:0.64373254776001;iRNA_m5C:0.999536712596719 24319 chr2 74782758 74782758 1 + G T HNSC 74782770 + 74782750 74782790 41 GCCCTGGAGATGCTGGAGAACTCCTTGTACAGCCCTACCTG GCCCTGGATATGCTGGAGAACTCCTTGTACAGCCCTACCTG < 41bp 1 0.447429743561997 1 0.442048162221909 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DOK1 ENSG00000115325 CDS Human protein_coding chr2:74782770 chr2:74782758 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_23484 0 0 1 0 3 Cytosol 1 0.500231432928506 1 0.999537134142988 hm5C_site_24319 DeepMRMD:1;iRNA_m5C:0.999537134142988 24320 chr1 45218850 45218850 1 + G A HNSC 45218831 + 45218811 45218851 41 CACTAGGCCTTCCTGCCCTGCAGTGGCTGAAATACCATTGA CACTAGGCCTTCCTGCCCTGCAGTGGCTGAAATACCATTAA < 41bp 1 0.368719743133769 1 0.275592625141144 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218831 chr1:45218850 synonymous SNV . 0 40 hm5C_associated_SNPs_23485 0 0 1 0 2 Nucleus 1 0.500234251932107 1 0.999531496135787 hm5C_site_24320 DeepMRMD:1;iRNA_m5C:0.999531496135787 24321 chr1 45218850 45218850 1 + G A HNSC 45218845 + 45218825 45218865 41 GCCCTGCAGTGGCTGAAATACCATTGAGGATGGTCAGCGAG GCCCTGCAGTGGCTGAAATACCATTAAGGATGGTCAGCGAG < 41bp 1 0.164443580990498 1 0.0601127743721008 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218845 chr1:45218850 synonymous SNV . 0 26 hm5C_associated_SNPs_23487 0 0 1 0 2 Nucleus 1 0.500231643921116 1 0.999536712157767 hm5C_site_24321 DeepMRMD:1;iRNA_m5C:0.999536712157767 24322 chr1 45218850 45218850 1 + G A HNSC 45218862 + 45218842 45218882 41 ATACCATTGAGGATGGTCAGCGAGGAGATGGAAGAGCAAGT ATACCATTAAGGATGGTCAGCGAGGAGATGGAAGAGCAAGT < 41bp 1 0.501632265061875 1 0.530737161636353 experiment 0.996735469876249 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218862 chr1:45218850 synonymous SNV . 0 9 hm5C_associated_SNPs_23488 0 0 1 0 2 Nucleus 1 0.500231643921092 0.938525676727294 0.999536712157816 hm5C_site_24322 DeepMRMD:0.938525676727294;iRNA_m5C:0.999536712157816 24323 chr2 204078305 204078305 1 + G C HNSC 204078310 + 204078290 204078330 41 GTTTGTGTCACCAAAGAATACAGCCATATTCTTGTAGGTTT GTTTGTGTCACCAAACAATACAGCCATATTCTTGTAGGTTT < 41bp 1 0.262212284150686 1 0.0697667300701141 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204078310 chr2:204078305 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_23489 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24323 DeepMRMD:1;iRNA_m5C:0.999536712157815 24324 chr8 61757439 61757439 1 + G C HNSC 61757430 + 61757410 61757450 41 ATTTGCTTTGCAGTTGGGGACGGTGGACAGACATTCTTTCC ATTTGCTTTGCAGTTGGGGACGGTGGACACACATTCTTTCC < 41bp 1 0.200293098215033 1 0.517277896404266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61757430 chr8:61757439 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_23491 0 0 1 0 1 Cytosol 1 0.500231643866515 0.965444207191468 0.99953671226697 hm5C_site_24324 DeepMRMD:0.965444207191468;iRNA_m5C:0.99953671226697 24325 chr11 67787208 67787208 1 + G A HNSC 67787211 + 67787191 67787231 41 TTGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTG TTGCTGTGGTGCTGGGCAGGCCCCAGGAGACGGGGCAGCTG < 41bp 1 0.502345076312946 1 0.53596031665802 experiment 0.995309847374108 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787211 chr11:67787208 nonsynonymous SNV 0.784 2 18 hm5C_associated_SNPs_23492 0 0 0 0 2 Ribosome 1 0.500231644756849 0.92807936668396 0.999536710486302 hm5C_site_24325 DeepMRMD:0.92807936668396;iRNA_m5C:0.999536710486302 24326 chr11 67787208 67787208 1 + G A HNSC 67787212 + 67787192 67787232 41 TGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGCTGC TGCTGTGGTGCTGGGCAGGCCCCAGGAGACGGGGCAGCTGC < 41bp 1 0.276414428844028 1 0.553558826446533 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787212 chr11:67787208 nonsynonymous SNV 0.784 2 17 hm5C_associated_SNPs_23493 0 0 0 0 2 Ribosome 1 0.50023164392107 0.892882347106934 0.99953671215786 hm5C_site_24326 DeepMRMD:0.892882347106934;iRNA_m5C:0.99953671215786 24327 chr5 40979957 40979957 1 + C A HNSC 40979964 + 40979944 40979984 41 CAGCTGTACTCTGCCTGCCTCAGCTGAGAAAGCTTGTGGTG CAGCTGTACTCTGACTGCCTCAGCTGAGAAAGCTTGTGGTG < 41bp 1 0.583911110948514 1 0.702953457832336 experiment 0.832177778102972 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control C7 ENSG00000112936 CDS Human protein_coding chr5:40979964 chr5:40979957 nonsynonymous SNV 0.953 1 14 hm5C_associated_SNPs_23494 0 0 0 0 0 Endoplasmic reticulum 1 0.500231608236372 0.594093084335328 0.999536783527257 hm5C_site_24327 DeepMRMD:0.594093084335328;iRNA_m5C:0.999536783527257 24328 chr2 157406233 157406233 1 + C A HNSC 157406248 + 157406228 157406268 41 ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC ACCCCAAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC < 41bp 1 0.636850892207703 1 0.441954374313354 experiment 0.726298215584594 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406248 chr2:157406233 nonsynonymous SNV 0.633 0 6 hm5C_associated_SNPs_23495 0 0 0 1 1 Endoplasmic reticulum 1 0.500231721924668 1 0.999536556150664 hm5C_site_24328 DeepMRMD:1;iRNA_m5C:0.999536556150664 24329 chr8 144732950 144732950 1 + G A HNSC 144732951 + 144732931 144732971 41 GGGAAGGCATTCCGTCATCGCTCAGACCTTATTGAACACCA GGGAAGGCATTCCGTCATCACTCAGACCTTATTGAACACCA < 41bp 1 0.578233247218846 1 0.37718939781189 experiment 0.843533505562307 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF623 ENSG00000183309 CDS Human protein_coding chr8:144732951 chr8:144732950 nonsynonymous SNV 0.004 1 20 hm5C_associated_SNPs_23497 0 0 1 0 0 cytosol 1 0.500231703678328 1 0.999536592643343 hm5C_site_24329 DeepMRMD:1;iRNA_m5C:0.999536592643343 24330 chr11 67376948 67376948 1 + G C HNSC 67376960 + 67376940 67376980 41 TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG TGAACGCACACGAGGGGGAGCCGGGCACCTGCAAGGACCGG < 41bp 1 0.41380717256798 1 0.72754430770874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376960 chr11:67376948 nonsynonymous SNV 0.935 5 9 hm5C_associated_SNPs_23498 0 0 1 0 1 Ribosome 1 0.500231643925323 0.54491138458252 0.999536712149354 hm5C_site_24330 DeepMRMD:0.54491138458252;iRNA_m5C:0.999536712149354 24331 chr12 73012775 73012775 1 + T C HNSC 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCCGAGCTCTTTATCCTCCAGATAAATTACTGGAC < 41bp 1 0.0786936187312215 1 0.303368717432022 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012775 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_23499 0 0 0 0 1 exosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_24331 DeepMRMD:1;iRNA_m5C:0.999536712157818 24332 chr10 63851924 63851924 1 + C T HNSC 63851921 + 63851901 63851941 41 GTCGGCGGCAGCAGAAGCCCCTACGGATGATCAGCCTACAG GTCGGCGGCAGCAGAAGCCCCTATGGATGATCAGCCTACAG < 41bp 1 0.275046556850877 1 0.332787930965424 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID5B ENSG00000150347 CDS Human protein_coding chr10:63851921 chr10:63851924 nonsynonymous SNV 0.042 1 24 hm5C_associated_SNPs_23500 0 0 1 0 0 Cytosol 1 0.500230063733646 1 0.999539872532707 hm5C_site_24332 DeepMRMD:1;iRNA_m5C:0.999539872532707 24333 chr12 53849783 53849783 1 + G T HNSC 53849767 + 53849747 53849787 41 TTCAAAGCCTTTGCTATGATCATTGACAAACTGGAAGAGGT TTCAAAGCCTTTGCTATGATCATTGACAAACTGGAATAGGT < 41bp 1 0.167816755603889 1 0.0826996564865112 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53849767 chr12:53849783 stopgain 1.000 1 37 hm5C_associated_SNPs_23501 0 0 1 0 1 Cytosol 1 0.500431442355305 1 0.999137115289391 hm5C_site_24333 DeepMRMD:1;iRNA_m5C:0.999137115289391 24334 chr18 56402442 56402442 1 + G C HNSC 56402451 + 56402431 56402471 41 AAGGTGTCAAGGAGCAGAAGCTTTTGAAATCCAGCATTCTG AAGGTGTCAAGCAGCAGAAGCTTTTGAAATCCAGCATTCTG < 41bp 1 0.0326024820442014 1 0.0194087624549866 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MALT1 ENSG00000172175 CDS Human protein_coding chr18:56402451 chr18:56402442 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_23502 0 0 1 0 1 Nucleus 1 0.500231739282839 1 0.999536521434322 hm5C_site_24334 DeepMRMD:1;iRNA_m5C:0.999536521434322 24335 chr5 72798854 72798854 1 + G C HNSC 72798844 + 72798824 72798864 41 CATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC CATTACAGGCCATGCTGAGACAAAGCAGCTCACAGAAATGC < 41bp 1 0.628008105109288 1 0.394893407821655 experiment 0.743983789781423 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798844 chr5:72798854 synonymous SNV . 0 31 hm5C_associated_SNPs_23503 0 0 1 1 1 Ribosome 1 0.500250222903406 1 0.999499554193187 hm5C_site_24335 DeepMRMD:1;iRNA_m5C:0.999499554193187 24336 chr20 35176500 35176500 1 + A G HNSC 35176493 + 35176473 35176513 41 AGCGAGGCCCCGGGGCCCATCAACTTCACCATGTTCCTCAC AGCGAGGCCCCGGGGCCCATCAACTTCGCCATGTTCCTCAC < 41bp 1 0.594822099929152 1 0.783656716346741 experiment 0.810355800141696 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYL9 ENSG00000101335 CDS Human protein_coding chr20:35176493 chr20:35176500 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_23504 0 0 0 0 2 Cytosol 1 0.500231643921355 0.432686567306518 0.99953671215729 hm5C_site_24336 DeepMRMD:0.432686567306518;iRNA_m5C:0.99953671215729 24337 chr1 161173235 161173235 1 + G A HNSC 161173246 + 161173226 161173266 41 GAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAG GAGGTGTTCAGCAGTGGCAGCCAGATGTGGAATGGGCACAG < 41bp 1 0.643115949624547 1 0.716034710407257 experiment 0.713768100750907 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173246 chr1:161173235 nonsynonymous SNV 0.998 2 10 hm5C_associated_SNPs_23505 0 0 1 0 2 Ribosome 1 0.500231956604095 0.567930579185486 0.999536086791809 hm5C_site_24337 DeepMRMD:0.567930579185486;iRNA_m5C:0.999536086791809 24338 chr2 27900722 27900722 1 + G A HNSC 27900703 + 27900683 27900723 41 TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAGG TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAAG < 41bp 1 0.27799542561184 1 0.246346920728683 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900703 chr2:27900722 nonsynonymous SNV 0.995 1 40 hm5C_associated_SNPs_23506 0 0 1 0 1 nucleoplasm 1 0.500231643923117 1 0.999536712153767 hm5C_site_24338 DeepMRMD:1;iRNA_m5C:0.999536712153767 24339 chr19 42848890 42848890 1 + G T HNSC 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCTTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.313850928965124 1 0.147659748792648 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848890 nonsynonymous SNV 0.456 3 4 hm5C_associated_SNPs_23507 0 0 1 0 2 Endoplasmic reticulum 1 0.500232043739461 1 0.999535912521078 hm5C_site_24339 DeepMRMD:1;iRNA_m5C:0.999535912521078 24340 chr1 874667 874667 1 + T C HNSC 874684 + 874664 874704 41 TGCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGAC TGCCGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGAC < 41bp 1 0.534006468595848 1 0.437510311603546 experiment 0.931987062808304 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874684 chr1:874667 nonsynonymous SNV 0.025 3 4 hm5C_associated_SNPs_23508 0 0 0 0 1 nucleus 1 0.500231638813525 1 0.99953672237295 hm5C_site_24340 DeepMRMD:1;iRNA_m5C:0.99953672237295 24341 chr1 874667 874667 1 + T C HNSC 874685 + 874665 874705 41 GCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACC GCCGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACC < 41bp 1 0.555171264381146 1 0.450270980596542 experiment 0.889657471237707 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874685 chr1:874667 nonsynonymous SNV 0.025 3 3 hm5C_associated_SNPs_23509 0 0 0 0 1 nucleus 1 0.500231643921153 1 0.999536712157695 hm5C_site_24341 DeepMRMD:1;iRNA_m5C:0.999536712157695 24342 chr18 13057631 13057631 1 + G C HNSC 13057639 + 13057619 13057659 41 CATGCTTGCTGTGTCGGGATCGCTTCCCAGACCCTCCTCAG CATGCTTGCTGTCTCGGGATCGCTTCCCAGACCCTCCTCAG < 41bp 1 0.265381151496458 1 0.126980096101761 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13057639 chr18:13057631 nonsynonymous SNV 0.954 2 13 hm5C_associated_SNPs_23511 0 0 1 0 1 Nucleus 1 0.50023164412012 1 0.999536711759759 hm5C_site_24342 DeepMRMD:1;iRNA_m5C:0.999536711759759 24343 chr21 40191453 40191453 1 + G A HNSC 40191451 + 40191431 40191471 41 TCCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT TCCCAAAGACCACGACTCCCCTAAGAACGGTGCGGACAGCT < 41bp 1 0.431986747747161 1 0.23714604973793 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191451 chr21:40191453 nonsynonymous SNV 0.023 0 23 hm5C_associated_SNPs_23512 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24343 DeepMRMD:1;iRNA_m5C:0.999536712157815 24344 chr5 112868689 112868689 1 + G C HNSC 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTGTGGCTGAAAGAGTTGCCGCAGACAGACGGGAAAGGA < 41bp 1 0.522112043643562 1 0.1002456843853 experiment 0.955775912712875 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868689 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_23513 0 0 1 0 1 Cytosol 1 0.500231643621315 1 0.999536712757369 hm5C_site_24344 DeepMRMD:1;iRNA_m5C:0.999536712757369 24345 chr5 112868689 112868689 1 + G C HNSC 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTGTGGCTGAAAGAGTTGCCGCAGACAGACGGGAAAGGAT < 41bp 1 0.595966157194087 1 0.749688506126404 experiment 0.808067685611826 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868689 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_23514 0 0 1 0 1 Cytosol 1 0.500231644155036 0.500622987747192 0.999536711689928 hm5C_site_24345 DeepMRMD:0.500622987747192;iRNA_m5C:0.999536711689928 24346 chr19 15222217 15222217 1 + G A HNSC 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCTAAGGACCTGTACCCCGATATCAATGT < 41bp 1 0.0515601003342745 1 0.0242379009723663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222217 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_23516 0 0 0 0 2 exosome 1 0.500231643922631 1 0.999536712154738 hm5C_site_24346 DeepMRMD:1;iRNA_m5C:0.999536712154738 24347 chr5 153760021 153760021 1 + G A HNSC 153760010 + 153759990 153760030 41 ATCTCTTGGCTTCTTCAGACCGCATTGCTCGGAACCGCAAG ATCTCTTGGCTTCTTCAGACCGCATTGCTCGAAACCGCAAG < 41bp 1 0.190839523771658 1 0.119844615459442 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760010 chr5:153760021 synonymous SNV . 0 32 hm5C_associated_SNPs_23518 0 0 1 0 1 Ribosome 1 0.500231192031591 1 0.999537615936817 hm5C_site_24347 DeepMRMD:1;iRNA_m5C:0.999537615936817 24348 chr5 153760021 153760021 1 + G A HNSC 153760024 + 153760004 153760044 41 TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC TCAGACCGCATTGCTCGAAACCGCAAGACCATTGTGTGCCC < 41bp 1 0.503401812792606 1 0.233085989952087 experiment 0.993196374414787 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760024 chr5:153760021 synonymous SNV . 0 18 hm5C_associated_SNPs_23519 0 0 1 0 1 Ribosome 1 0.500231641753528 1 0.999536716492944 hm5C_site_24348 DeepMRMD:1;iRNA_m5C:0.999536716492944 24349 chr2 191235867 191235867 1 + C G HNSC 191235863 + 191235843 191235883 41 CATCTTTTCAGAAGATACCACATTCAAATGGGACTCTTGTG CATCTTTTCAGAAGATACCACATTGAAATGGGACTCTTGTG < 41bp 1 0.0895185036721965 1 0.242107301950455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INPP1 ENSG00000151689 CDS Human protein_coding chr2:191235863 chr2:191235867 nonsynonymous SNV 0.983 3 25 hm5C_associated_SNPs_23520 0 0 0 0 0 exosome 1 0.500232117291348 1 0.999535765417304 hm5C_site_24349 DeepMRMD:1;iRNA_m5C:0.999535765417304 24350 chr15 65152104 65152104 1 + C G HNSC 65152098 + 65152078 65152118 41 CCATCTTGCCCACAGGTCAGCGACATCAAATTCCAGGCACC CCATCTTGCCCACAGGTCAGCGACATGAAATTCCAGGCACC < 41bp 1 0.50044760275586 1 0.406839609146118 experiment 0.999104794488279 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65152098 chr15:65152104 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_23521 0 0 0 0 2 chromatin 1 0.500231643921085 1 0.99953671215783 hm5C_site_24350 DeepMRMD:1;iRNA_m5C:0.99953671215783 24351 chrX 41000592 41000592 1 + G A HNSC 41000586 + 41000566 41000606 41 TCAATGGAAAGATGAATGCACTGAATGAAGTTAATAAGGTG TCAATGGAAAGATGAATGCACTGAATAAAGTTAATAAGGTG < 41bp 1 0.268278702790841 1 0.468676626682281 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41000586 chrX:41000592 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_23522 0 0 1 0 2 Nucleus 1 0.500231528178506 1 0.999536943642988 hm5C_site_24351 DeepMRMD:1;iRNA_m5C:0.999536943642988 24352 chr16 29994478 29994478 1 + C G HNSC 29994488 + 29994468 29994508 41 ATCAGCGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGC ATCAGCGCCTGCAGCCAGAGCAGCTCCGTCAACAGCCTAGC < 41bp 1 0.332474411462859 1 0.269552230834961 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994488 chr16:29994478 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_23523 0 0 1 0 1 Nucleus 1 0.500231643921062 1 0.999536712157876 hm5C_site_24352 DeepMRMD:1;iRNA_m5C:0.999536712157876 24353 chr16 29994478 29994478 1 + C G HNSC 29994493 + 29994473 29994513 41 CGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGCAGATG CGCCTGCAGCCAGAGCAGCTCCGTCAACAGCCTAGCAGATG < 41bp 1 0.0805092087886834 1 0.225979715585709 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994493 chr16:29994478 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_23524 0 0 1 0 1 Nucleus 1 0.500231653131337 1 0.999536693737327 hm5C_site_24353 DeepMRMD:1;iRNA_m5C:0.999536693737327 24354 chrX 71401627 71401627 1 + G A HNSC 71401639 + 71401619 71401659 41 AACAACAAGCTTCCAAGATGCCGCCCAAAGGAAAAAGTGGT AACAACAAACTTCCAAGATGCCGCCCAAAGGAAAAAGTGGT < 41bp 1 0.100816543136876 1 0.257991313934326 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIN4 ENSG00000102309 CDS Human protein_coding chrX:71401639 chrX:71401627 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_23525 0 0 0 0 1 Ribosome 1 0.500231643924251 1 0.999536712151498 hm5C_site_24354 DeepMRMD:1;iRNA_m5C:0.999536712151498 24355 chr16 57786709 57786709 1 + G C HNSC 57786697 + 57786677 57786717 41 TCGCCTGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGC TCGCCTGGCCCAGGAGCGTCCTCTTCAACCCACACGGCTGC < 41bp 1 0.19554549202509 1 0.191257864236832 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786697 chr16:57786709 nonsynonymous SNV 0.925 5 33 hm5C_associated_SNPs_23526 0 0 1 0 1 Cytosol 1 0.500231643848991 1 0.999536712302017 hm5C_site_24355 DeepMRMD:1;iRNA_m5C:0.999536712302017 24356 chr16 57786709 57786709 1 + G C HNSC 57786702 + 57786682 57786722 41 TGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGCTGCCT TGGCCCAGGAGCGTCCTCTTCAACCCACACGGCTGCTGCCT < 41bp 1 0.397799218561598 1 0.19084706902504 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786702 chr16:57786709 nonsynonymous SNV 0.925 5 28 hm5C_associated_SNPs_23527 0 0 1 0 1 Cytosol 1 0.500231643920777 1 0.999536712158446 hm5C_site_24356 DeepMRMD:1;iRNA_m5C:0.999536712158446 24357 chr9 139749723 139749723 1 + G A HNSC 139749738 + 139749718 139749758 41 GGGCAGACAGGCCCGGGGGGCGTCGTGGGTCTGGACGACCT GGGCAAACAGGCCCGGGGGGCGTCGTGGGTCTGGACGACCT < 41bp 1 0.199350782466324 1 0.358616292476654 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139749738 chr9:139749723 synonymous SNV . 0 6 hm5C_associated_SNPs_23528 0 0 1 0 2 chromatin 1 0.500231690286375 1 0.999536619427251 hm5C_site_24357 DeepMRMD:1;iRNA_m5C:0.999536619427251 24358 chr2 233671317 233671317 1 + A T HNSC 233671297 + 233671277 233671317 41 GTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA GTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAT < 41bp 1 0.202339822647834 1 0.325406134128571 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671297 chr2:233671317 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_23529 0 0 1 0 1 Nucleus 1 0.500231640682729 1 0.999536718634542 hm5C_site_24358 DeepMRMD:1;iRNA_m5C:0.999536718634542 24359 chr17 34001260 34001260 1 + G A HNSC 34001266 + 34001246 34001286 41 ACTCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC ACTCACCGCCAAGGACACATCTATATGGAAATGAACTTCAC < 41bp 1 0.545919632744562 1 0.60204416513443 experiment 0.908160734510877 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:34001266 chr17:34001260 synonymous SNV . 0 15 hm5C_associated_SNPs_23530 0 0 1 0 2 Cytosol 1 0.500231643921093 0.79591166973114 0.999536712157814 hm5C_site_24359 DeepMRMD:0.79591166973114;iRNA_m5C:0.999536712157814 24360 chr1 228479702 228479702 1 + G C HNSC 228479689 + 228479669 228479709 41 GTGTGAACTGAGCAAGGTGGCCCCTGTGGAGTGGAGGAAGG GTGTGAACTGAGCAAGGTGGCCCCTGTGGAGTGCAGGAAGG < 41bp 1 0.0465464759881679 1 0.200554132461548 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228479689 chr1:228479702 nonsynonymous SNV 0.206 5 34 hm5C_associated_SNPs_23531 0 0 0 0 0 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_24360 DeepMRMD:1;iRNA_m5C:0.999536712157813 24361 chr16 30998261 30998261 1 + G A HNSC 30998260 + 30998240 30998280 41 ACTTCTACCGCCAGGGCCTGCGCCTGGGAGGTTGGCTCTTC ACTTCTACCGCCAGGGCCTGCACCTGGGAGGTTGGCTCTTC < 41bp 1 0.608490231349962 1 0.207854092121124 experiment 0.783019537300076 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30998260 chr16:30998261 nonsynonymous SNV 0.695 4 22 hm5C_associated_SNPs_23532 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_24361 DeepMRMD:1;iRNA_m5C:0.999536712157815 24362 chr4 77660200 77660200 1 + C T HNSC 77660180 + 77660160 77660200 41 TGGCCGGGAGCGTTCAGGCTCCATGGACAATACTTCTGCTC TGGCCGGGAGCGTTCAGGCTCCATGGACAATACTTCTGCTT < 41bp 1 0.0944559148155731 1 0.228184372186661 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660180 chr4:77660200 stopgain 0.983 0 41 hm5C_associated_SNPs_23533 0 0 1 0 0 Ribosome 1 0.50023630398842 1 0.99952739202316 hm5C_site_24362 DeepMRMD:1;iRNA_m5C:0.99952739202316 24363 chr22 39918110 39918110 1 + G A HNSC 39918100 + 39918080 39918120 41 TCCTTTAGTTTAGAGCTGGGCAGTGAAGTGGATATCACTGA TCCTTTAGTTTAGAGCTGGGCAGTGAAGTGAATATCACTGA < 41bp 1 0.549871621131485 1 0.335456639528275 experiment 0.900256757737029 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ATF4 ENSG00000128272 CDS Human protein_coding chr22:39918100 chr22:39918110 nonsynonymous SNV 0.997 2 31 hm5C_associated_SNPs_23534 0 0 1 0 0 Ribosome 1 0.500231643498381 1 0.999536713003238 hm5C_site_24363 DeepMRMD:1;iRNA_m5C:0.999536713003238 24364 chr22 39918110 39918110 1 + G A HNSC 39918115 + 39918095 39918135 41 CTGGGCAGTGAAGTGGATATCACTGAAGGAGATAGGAAGCC CTGGGCAGTGAAGTGAATATCACTGAAGGAGATAGGAAGCC < 41bp 1 0.650058360784047 1 0.0917175710201263 experiment 0.699883278431907 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ATF4 ENSG00000128272 CDS Human protein_coding chr22:39918115 chr22:39918110 nonsynonymous SNV 0.997 2 16 hm5C_associated_SNPs_23535 0 0 1 0 0 Ribosome 1 0.500231643920886 1 0.999536712158228 hm5C_site_24364 DeepMRMD:1;iRNA_m5C:0.999536712158228 24365 chr6 147525760 147525760 1 + G A HNSC 147525772 + 147525752 147525792 41 TCCGCCTGGGAACCGGGAGCCGGAGATCCAGGAAACGCTCC TCCGCCTGAGAACCGGGAGCCGGAGATCCAGGAAACGCTCC < 41bp 1 0.680705713764537 1 0.927506625652313 experiment 0.638588572470927 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147525772 chr6:147525760 nonsynonymous SNV 0.989 1 9 hm5C_associated_SNPs_23536 0 0 1 0 1 Nucleus 1 0.50023164392104 0.144986748695374 0.999536712157919 hm5C_site_24365 DeepMRMD:0.144986748695374;iRNA_m5C:0.999536712157919 24366 chr1 27088729 27088729 1 + C T HNSC 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGATAGATA < 41bp 1 0.196289032944718 1 0.0512232184410095 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088729 stopgain 1.000 1 36 hm5C_associated_SNPs_23537 0 0 1 0 2 Nucleus 1 0.500231643921077 1 0.999536712157847 hm5C_site_24366 DeepMRMD:1;iRNA_m5C:0.999536712157847 24367 chr4 41652416 41652416 1 + G A HNSC 41652424 + 41652404 41652444 41 TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGT TTATAGGTAGACAGGAAAGTCAGTGTGAATGGAGAGACGGT < 41bp 1 0.264627398523394 1 0.360642313957214 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41652424 chr4:41652416 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_23538 0 0 1 0 1 Nucleus 1 0.500231649608763 1 0.999536700782473 hm5C_site_24367 DeepMRMD:1;iRNA_m5C:0.999536700782473 24368 chr5 176520484 176520484 1 + C T HNSC 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGCGGCCCTGCCTTGCTCGCCGGCCTCG < 41bp 1 0.309882468431465 1 0.0616801083087921 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520483 chr5:176520484 nonsynonymous SNV 0.043 1 22 hm5C_associated_SNPs_23539 0 0 1 0 3 Endoplasmic reticulum 1 0.500231643966022 1 0.999536712067957 hm5C_site_24368 DeepMRMD:1;iRNA_m5C:0.999536712067957 24369 chr3 97596560 97596560 1 + G T HNSC 97596546 + 97596526 97596566 41 TGAGAGCTGGAAGTGGGGAGCGTGTTACCTTCCAGTTGCCA TGAGAGCTGGAAGTGGGGAGCGTGTTACCTTCCATTTGCCA < 41bp 1 0.176847147120572 1 0.112462669610977 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRYBG3 ENSG00000080200 CDS Human protein_coding chr3:97596546 chr3:97596560 nonsynonymous SNV 0.922 0 35 hm5C_associated_SNPs_23540 0 0 1 0 0 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_24369 DeepMRMD:1;iRNA_m5C:0.999536712157806 24370 chrX 47069517 47069517 1 + G C HNSC 47069520 + 47069500 47069540 41 TGCACAACTTCCCTCCTGACCAGGTAATGCCCAGTTGTTGG TGCACAACTTCCCTCCTCACCAGGTAATGCCCAGTTGTTGG < 41bp 1 0.492377866168078 1 0.634246408939362 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47069520 chrX:47069517 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_23541 0 0 1 0 1 Nucleus 1 0.500231599645969 0.731507182121276 0.999536800708062 hm5C_site_24370 DeepMRMD:0.731507182121276;iRNA_m5C:0.999536800708062 24371 chr5 176710792 176710792 1 + G A HNSC 176710791 + 176710771 176710811 41 TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTCCC TTCTTTTGGAATTCTAGGACCAAATCATTGATGCTGGTCCC < 41bp 1 0.0647591237436759 1 0.268729597330093 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176710791 chr5:176710792 nonsynonymous SNV 0.996 5 22 hm5C_associated_SNPs_23542 2 0 1 0 1 Nucleus 1 0.500231647197893 1 0.999536705604214 hm5C_site_24371 DeepMRMD:1;iRNA_m5C:0.999536705604214 Sotos syndrome 1 Sotos syndrome 1 24372 chr16 29811305 29811305 1 + G A HNSC 29811295 + 29811275 29811315 41 CCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGA CCACCAGAGGCAAAGAGAGCCCGAGGCCCTAAGGAAGAGGA < 41bp 1 0.240024646722217 1 0.785466432571411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811295 chr16:29811305 nonsynonymous SNV 0.996 0 31 hm5C_associated_SNPs_23543 0 0 1 0 2 Cytosol 1 0.500231643921092 0.429067134857178 0.999536712157816 hm5C_site_24372 DeepMRMD:0.429067134857178;iRNA_m5C:0.999536712157816 24373 chr16 29811305 29811305 1 + G A HNSC 29811301 + 29811281 29811321 41 GAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGG GAGGCAAAGAGAGCCCGAGGCCCTAAGGAAGAGGAGATCGG < 41bp 1 0.234688386853639 1 0.169519543647766 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811301 chr16:29811305 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_23544 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24373 DeepMRMD:1;iRNA_m5C:0.999536712157815 24374 chr1 22332233 22332233 1 + C G HNSC 22332213 + 22332193 22332233 41 ACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATG < 41bp 1 0.684168252093887 1 0.332476198673248 experiment 0.631663495812226 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332213 chr1:22332233 nonsynonymous SNV 0.911 4 41 hm5C_associated_SNPs_23545 0 0 0 0 2 Endoplasmic reticulum 1 0.500231674056727 1 0.999536651886547 hm5C_site_24374 DeepMRMD:1;iRNA_m5C:0.999536651886547 24375 chr1 22332233 22332233 1 + C G HNSC 22332214 + 22332194 22332234 41 CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATGA < 41bp 1 0.548651191400044 1 0.310924887657166 experiment 0.902697617199913 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332214 chr1:22332233 nonsynonymous SNV 0.911 4 40 hm5C_associated_SNPs_23546 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921155 1 0.99953671215769 hm5C_site_24375 DeepMRMD:1;iRNA_m5C:0.99953671215769 24376 chr1 22332233 22332233 1 + C G HNSC 22332215 + 22332195 22332235 41 CTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATGAA < 41bp 1 0.6746227605979 1 0.205919355154037 experiment 0.6507544788042 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332215 chr1:22332233 nonsynonymous SNV 0.911 4 39 hm5C_associated_SNPs_23547 0 0 0 0 2 Endoplasmic reticulum 1 0.500230693658903 1 0.999538612682195 hm5C_site_24376 DeepMRMD:1;iRNA_m5C:0.999538612682195 24377 chr1 22332233 22332233 1 + C G HNSC 22332227 + 22332207 22332247 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT GAGGGCCCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCT < 41bp 1 0.55134518790485 1 0.104128539562225 experiment 0.8973096241903 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332227 chr1:22332233 nonsynonymous SNV 0.911 4 27 hm5C_associated_SNPs_23548 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_24377 DeepMRMD:1;iRNA_m5C:0.999536712157815 24378 chr1 22332233 22332233 1 + C G HNSC 22332228 + 22332208 22332248 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG AGGGCCCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCTG < 41bp 1 0.214500652130858 1 0.0480100214481354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332228 chr1:22332233 nonsynonymous SNV 0.911 4 26 hm5C_associated_SNPs_23549 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164323673 1 0.999536713526539 hm5C_site_24378 DeepMRMD:1;iRNA_m5C:0.999536713526539 24379 chr1 22332233 22332233 1 + C G HNSC 22332229 + 22332209 22332249 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT GGGCCCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCTGT < 41bp 1 0.215340608834583 1 0.203267008066177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332229 chr1:22332233 nonsynonymous SNV 0.911 4 25 hm5C_associated_SNPs_23550 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392117 1 0.999536712157659 hm5C_site_24379 DeepMRMD:1;iRNA_m5C:0.999536712157659 24380 chr1 22332233 22332233 1 + C G HNSC 22332230 + 22332210 22332250 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT GGCCCCGAGCAGGTGATCCCCATGAACTCTGAGGAGCTGTT < 41bp 1 0.623206373148099 1 0.356407225131989 experiment 0.753587253703802 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332230 chr1:22332233 nonsynonymous SNV 0.911 4 24 hm5C_associated_SNPs_23551 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921292 1 0.999536712157415 hm5C_site_24380 DeepMRMD:1;iRNA_m5C:0.999536712157415 24381 chr1 22332233 22332233 1 + C G HNSC 22332236 + 22332216 22332256 41 GAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGTGCA GAGCAGGTGATCCCCATGAACTCTGAGGAGCTGTTTGTGCA < 41bp 1 0.576169350881702 1 0.16187971830368 experiment 0.847661298236596 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332236 chr1:22332233 nonsynonymous SNV 0.911 4 18 hm5C_associated_SNPs_23552 0 0 0 0 2 Endoplasmic reticulum 1 0.500236315954748 1 0.999527368090503 hm5C_site_24381 DeepMRMD:1;iRNA_m5C:0.999527368090503 24382 chr1 22332233 22332233 1 + C G HNSC 22332246 + 22332226 22332266 41 TCCCCATCAACTCTGAGGAGCTGTTTGTGCATCCACTCTGG TCCCCATGAACTCTGAGGAGCTGTTTGTGCATCCACTCTGG < 41bp 1 0.272522375645643 1 0.116419166326523 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332246 chr1:22332233 nonsynonymous SNV 0.911 4 8 hm5C_associated_SNPs_23553 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_24382 DeepMRMD:1;iRNA_m5C:0.999536712157818 24383 chr10 51863892 51863892 1 + G A HNSC 51863880 + 51863860 51863900 41 AGCTCCCCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA AGCTCCCCACGTTGGTTTCCCTGTTTGATGATAAAGATGAA < 41bp 1 0.124779778964558 1 0.227379411458969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51863880 chr10:51863892 nonsynonymous SNV 0.997 3 33 hm5C_associated_SNPs_23554 0 0 0 0 2 unknown 1 0.500231643921104 1 0.999536712157792 hm5C_site_24383 DeepMRMD:1;iRNA_m5C:0.999536712157792 24384 chr1 233482347 233482347 1 + C G HNSC 233482335 + 233482315 233482355 41 GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTGTAAGGGAA < 41bp 1 0.139125460180242 1 0.116422474384308 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482335 chr1:233482347 nonsynonymous SNV 0.994 5 33 hm5C_associated_SNPs_23555 0 0 1 0 1 unknown 1 0.500231643921172 1 0.999536712157657 hm5C_site_24384 DeepMRMD:1;iRNA_m5C:0.999536712157657 24385 chr2 220349284 220349284 1 + G A HNSC 220349282 + 220349262 220349302 41 GCGCGGCCCCTTCCGTGGGGCCGAGGAGGAGGATGGCATAT GCGCGGCCCCTTCCGTGGGGCCAAGGAGGAGGATGGCATAT < 41bp 1 0.133497056192545 1 0.437459319829941 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220349282 chr2:220349284 nonsynonymous SNV 0.327 0 23 hm5C_associated_SNPs_23556 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24385 DeepMRMD:1;iRNA_m5C:0.999536712157815 24386 chr2 220349284 220349284 1 + G A HNSC 220349283 + 220349263 220349303 41 CGCGGCCCCTTCCGTGGGGCCGAGGAGGAGGATGGCATATA CGCGGCCCCTTCCGTGGGGCCAAGGAGGAGGATGGCATATA < 41bp 1 0.306955772709686 1 0.681385457515717 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220349283 chr2:220349284 nonsynonymous SNV 0.327 0 22 hm5C_associated_SNPs_23557 0 0 0 0 0 Nucleus 1 0.500231643921092 0.637229084968566 0.999536712157815 hm5C_site_24386 DeepMRMD:0.637229084968566;iRNA_m5C:0.999536712157815 24387 chr16 2569686 2569686 1 + C G HNSC 2569701 + 2569681 2569721 41 CTCATCTTCGCCGAGGTGCTCGGCCTCTACGGTCTCATCGT CTCATGTTCGCCGAGGTGCTCGGCCTCTACGGTCTCATCGT < 41bp 1 0.538980839255894 1 0.57479852437973 experiment 0.922038321488212 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569701 chr16:2569686 nonsynonymous SNV 0.925 4 6 hm5C_associated_SNPs_23558 0 0 1 0 0 Endoplasmic reticulum 1 0.500231645133604 0.85040295124054 0.999536709732792 hm5C_site_24387 DeepMRMD:0.85040295124054;iRNA_m5C:0.999536709732792 24388 chr6 27101060 27101060 1 + G A HNSC 27101054 + 27101034 27101074 41 GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACAA GAGATCCTGGAACTGGCGGGCAACGCAGCCCGCGACAACAA < 41bp 1 0.561718124414889 1 0.456470102071762 experiment 0.876563751170222 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101054 chr6:27101060 synonymous SNV . 0 27 hm5C_associated_SNPs_23559 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_24388 DeepMRMD:1;iRNA_m5C:0.999536712157815 24389 chr6 27101060 27101060 1 + G A HNSC 27101062 + 27101042 27101082 41 GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC GGAACTGGCGGGCAACGCAGCCCGCGACAACAAGAAGACCC < 41bp 1 0.402934027875585 1 0.403565526008606 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101062 chr6:27101060 synonymous SNV . 0 19 hm5C_associated_SNPs_23560 0 0 1 0 0 Ribosome 1 0.500231643588427 1 0.999536712823146 hm5C_site_24389 DeepMRMD:1;iRNA_m5C:0.999536712823146 24390 chr6 27101060 27101060 1 + G A HNSC 27101063 + 27101043 27101083 41 GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG GAACTGGCGGGCAACGCAGCCCGCGACAACAAGAAGACCCG < 41bp 1 0.501986120522199 1 0.475526094436646 experiment 0.996027758955601 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101063 chr6:27101060 synonymous SNV . 0 18 hm5C_associated_SNPs_23561 0 0 1 0 0 Ribosome 1 0.500231643889239 1 0.999536712221522 hm5C_site_24390 DeepMRMD:1;iRNA_m5C:0.999536712221522 24391 chr7 142459743 142459743 1 + G A HNSC 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCCCCAATACGACAGGAAGACTCTGAACAATAACATCATGT < 41bp 1 0.499478259200358 1 0.189958333969116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459743 nonsynonymous SNV 0.418 5 32 hm5C_associated_SNPs_23562 0 0 0 0 0 Cytosol 1 0.500231640207523 1 0.999536719584954 hm5C_site_24391 DeepMRMD:1;iRNA_m5C:0.999536719584954 24392 chr7 142459743 142459743 1 + G A HNSC 142459739 + 142459719 142459759 41 TACGACAGGAAGACTCTGAACAATGACATCATGTTAATCAA TACGACAGGAAGACTCTGAACAATAACATCATGTTAATCAA < 41bp 1 0.599660747096015 1 0.233009517192841 experiment 0.80067850580797 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459739 chr7:142459743 nonsynonymous SNV 0.418 5 25 hm5C_associated_SNPs_23563 0 0 0 0 0 Cytosol 1 0.500231643960582 1 0.999536712078836 hm5C_site_24392 DeepMRMD:1;iRNA_m5C:0.999536712078836 24393 chr7 142459743 142459743 1 + G A HNSC 142459745 + 142459725 142459765 41 AGGAAGACTCTGAACAATGACATCATGTTAATCAAGCTCTC AGGAAGACTCTGAACAATAACATCATGTTAATCAAGCTCTC < 41bp 1 0.635319048676299 1 0.138534635305405 experiment 0.729361902647402 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459745 chr7:142459743 nonsynonymous SNV 0.418 5 19 hm5C_associated_SNPs_23564 0 0 0 0 0 Cytosol 1 0.500230612296373 1 0.999538775407253 hm5C_site_24393 DeepMRMD:1;iRNA_m5C:0.999538775407253 24394 chr7 142459743 142459743 1 + G A HNSC 142459748 + 142459728 142459768 41 AAGACTCTGAACAATGACATCATGTTAATCAAGCTCTCCTC AAGACTCTGAACAATAACATCATGTTAATCAAGCTCTCCTC < 41bp 1 0.567025937554423 1 0.0646775364875793 experiment 0.865948124891154 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459748 chr7:142459743 nonsynonymous SNV 0.418 5 16 hm5C_associated_SNPs_23565 0 0 0 0 0 Cytosol 1 0.50023164392104 1 0.99953671215792 hm5C_site_24394 DeepMRMD:1;iRNA_m5C:0.99953671215792 24395 chr7 142459743 142459743 1 + G A HNSC 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATAACATCATGTTAATCAAGCTCTCCTCACGTGCAGT < 41bp 1 0.49737630690301 1 0.708272457122803 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459743 nonsynonymous SNV 0.418 5 7 hm5C_associated_SNPs_23566 0 0 0 0 0 Cytosol 1 0.500231623633013 0.583455085754394 0.999536752733974 hm5C_site_24395 DeepMRMD:0.583455085754394;iRNA_m5C:0.999536752733974 24396 chr7 142459743 142459743 1 + G A HNSC 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATAACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC < 41bp 1 0.156771142246487 1 0.0382092297077179 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459743 nonsynonymous SNV 0.418 5 3 hm5C_associated_SNPs_23567 0 0 0 0 0 Cytosol 1 0.500228559126044 1 0.999542881747911 hm5C_site_24396 DeepMRMD:1;iRNA_m5C:0.999542881747911 24397 chr7 142459743 142459743 1 + G A HNSC 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA AACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA < 41bp 1 0.426837754238387 1 0.317969918251038 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459743 nonsynonymous SNV 0.418 5 1 hm5C_associated_SNPs_23568 0 0 0 0 0 Cytosol 1 0.500230830369131 1 0.999538339261739 hm5C_site_24397 DeepMRMD:1;iRNA_m5C:0.999538339261739 24398 chr6 142519629 142519629 1 + C G HNSC 142519636 + 142519616 142519656 41 CACTCAGCCAACTCAGCCATCATCATCTTCAACTTATGACC CACTCAGCCAACTGAGCCATCATCATCTTCAACTTATGACC < 41bp 1 0.574335197454975 1 0.217449486255646 experiment 0.85132960509005 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519636 chr6:142519629 nonsynonymous SNV 0.997 0 14 hm5C_associated_SNPs_23569 0 0 1 0 1 Ribosome 1 0.500231644107913 1 0.999536711784173 hm5C_site_24398 DeepMRMD:1;iRNA_m5C:0.999536711784173 24399 chr12 6979496 6979496 1 + T C HNSC 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCCTTGTGGGCGGTGCTTCCCTCAAGCCCGAATTCGTGG < 41bp 1 0.131280406712829 1 0.0333411395549774 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979496 synonymous SNV . 0 13 hm5C_associated_SNPs_23570 0 0 1 0 1 Ribosome 1 0.50023164667504 1 0.999536706649921 hm5C_site_24399 DeepMRMD:1;iRNA_m5C:0.999536706649921 24400 chr12 6979496 6979496 1 + T C HNSC 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGCGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT < 41bp 1 0.589081321775144 1 0.899112462997437 experiment 0.821837356449711 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979496 synonymous SNV . 0 9 hm5C_associated_SNPs_23571 0 0 1 0 1 Ribosome 1 0.5002317552368 0.201775074005126 0.999536489526401 hm5C_site_24400 DeepMRMD:0.201775074005126;iRNA_m5C:0.999536489526401 24401 chr1 183495741 183495741 1 + A G HNSC 183495750 + 183495730 183495770 41 GTTATTACAAGAACTGTGTACAGTATTTAATGTAGATTTAC GTTATTACAAGGACTGTGTACAGTATTTAATGTAGATTTAC < 41bp 1 0.295022953000612 1 0.0332200527191162 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183495750 chr1:183495741 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_23572 0 0 1 0 1 Cytosol 1 0.500239156022695 1 0.99952168795461 hm5C_site_24401 DeepMRMD:1;iRNA_m5C:0.99952168795461 24402 chr1 155106009 155106009 1 + G A HNSC 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGAAGACCGCTACTTGAGGTTGAAGGT < 41bp 1 0.138362238877611 1 0.180885076522827 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106009 nonsynonymous SNV 0.967 5 26 hm5C_associated_SNPs_23573 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24402 DeepMRMD:1;iRNA_m5C:0.999536712157815 24403 chr11 111594826 111594826 1 + A G HNSC 111594827 + 111594807 111594847 41 TAGACGCTGTGGATCCACAACACAACGGGTATGTCCTGGTG TAGACGCTGTGGATCCACAGCACAACGGGTATGTCCTGGTG < 41bp 1 0.413427097070291 1 0.228440374135971 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SIK2 ENSG00000170145 CDS Human protein_coding chr11:111594827 chr11:111594826 synonymous SNV . 0 20 hm5C_associated_SNPs_23574 0 0 0 0 0 Cytosol 1 0.500231649945941 1 0.999536700108117 hm5C_site_24403 DeepMRMD:1;iRNA_m5C:0.999536700108117 24404 chr7 150931160 150931160 1 + T G HNSC 150931172 + 150931152 150931192 41 GGGCTGTCTCTGGGGTGCAGCCTGAGCCTCCTGCGGGTTTC GGGCTGTCGCTGGGGTGCAGCCTGAGCCTCCTGCGGGTTTC < 41bp 1 0.465770302181657 1 0.145815789699554 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150931172 chr7:150931160 synonymous SNV . 0 9 hm5C_associated_SNPs_23575 0 0 1 0 0 Nucleus 1 0.500231643976647 1 0.999536712046705 hm5C_site_24404 DeepMRMD:1;iRNA_m5C:0.999536712046705 24405 chr7 150931160 150931160 1 + T G HNSC 150931173 + 150931153 150931193 41 GGCTGTCTCTGGGGTGCAGCCTGAGCCTCCTGCGGGTTTCC GGCTGTCGCTGGGGTGCAGCCTGAGCCTCCTGCGGGTTTCC < 41bp 1 0.609130861342843 1 0.133744657039642 experiment 0.781738277314314 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150931173 chr7:150931160 synonymous SNV . 0 8 hm5C_associated_SNPs_23576 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24405 DeepMRMD:1;iRNA_m5C:0.999536712157815 24406 chr11 117280361 117280361 1 + G A HNSC 117280351 + 117280331 117280371 41 CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAGATCCAC CAGTCGACTCAACCCCGAGTCTCACCTCCCACAAGATCCAC < 41bp 1 0.169274817379812 1 0.0293587446212769 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP164 ENSG00000110274 CDS Human protein_coding chr11:117280351 chr11:117280361 nonsynonymous SNV 0.000 0 31 hm5C_associated_SNPs_23577 0 0 0 0 1 Cytosol 1 0.500231642547503 1 0.999536714904995 hm5C_site_24406 DeepMRMD:1;iRNA_m5C:0.999536714904995 24407 chr17 33321416 33321416 1 + T C HNSC 33321403 + 33321383 33321423 41 AGGTGCATAAGAATGGAGACCACTTCAGCTACTTCAGCCGC AGGTGCATAAGAATGGAGACCACTTCAGCTACTCCAGCCGC < 41bp 1 0.240380727343437 1 0.0709262788295746 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33321403 chr17:33321416 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_23578 0 0 0 0 0 Cytosol 1 0.500231643921091 1 0.999536712157819 hm5C_site_24407 DeepMRMD:1;iRNA_m5C:0.999536712157819 24408 chr19 3119235 3119235 1 + G A HNSC 3119221 + 3119201 3119241 41 CAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCGGACCAT CAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCAGACCAT < 41bp 1 0.276145022552385 1 0.366033017635345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNA11 ENSG00000088256 CDS Human protein_coding chr19:3119221 chr19:3119235 nonsynonymous SNV 0.990 1 35 hm5C_associated_SNPs_23579 0 0 1 0 1 Cytosol 1 0.500231643935904 1 0.999536712128192 hm5C_site_24408 DeepMRMD:1;iRNA_m5C:0.999536712128192 24409 chr5 65105442 65105442 1 + G A HNSC 65105431 + 65105411 65105451 41 GAAAATTGGGTGTGGGACGTCGATTCCCTCCGAAGATTGTC GAAAATTGGGTGTGGGACGTCGATTCCCTCCAAAGATTGTC < 41bp 1 0.120050253828455 1 0.296836614608765 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65105431 chr5:65105442 nonsynonymous SNV 0.994 1 32 hm5C_associated_SNPs_23580 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24409 DeepMRMD:1;iRNA_m5C:0.999536712157815 24410 chr5 43650623 43650623 1 + T C HNSC 43650617 + 43650597 43650637 41 GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCACAACT GGTTGGCACTGATGGGAGGACATTTGCATCCTTCCACAACT < 41bp 1 0.135141726991381 1 0.0290204286575317 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43650617 chr5:43650623 nonsynonymous SNV 0.994 1 27 hm5C_associated_SNPs_23581 0 0 1 0 2 Endoplasmic reticulum 1 0.5002316439211 1 0.9995367121578 hm5C_site_24410 DeepMRMD:1;iRNA_m5C:0.9995367121578 24411 chr2 9528450 9528450 1 + C T HNSC 9528446 + 9528426 9528466 41 AGTCCCAACCGGCGGGAAGACCGGCCCATCAGCTTCTACCA AGTCCCAACCGGCGGGAAGACCGGTCCATCAGCTTCTACCA < 41bp 1 0.537476092104064 1 0.305991113185883 experiment 0.925047815791872 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9528446 chr2:9528450 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_23582 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24411 DeepMRMD:1;iRNA_m5C:0.999536712157815 24412 chr22 40660731 40660731 1 + A G HNSC 40660713 + 40660693 40660733 41 CTCAACCCTTGGAGGTGCTGCTGCTTCAAATTATGCAAATT CTCAACCCTTGGAGGTGCTGCTGCTTCAAATTATGCAAGTT < 41bp 1 0.085751080587717 1 0.0933543741703033 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40660713 chr22:40660731 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_23583 0 0 1 0 0 Cytosol 1 0.50023164391842 1 0.999536712163159 hm5C_site_24412 DeepMRMD:1;iRNA_m5C:0.999536712163159 24413 chr14 23070609 23070609 1 + C T HNSC 23070600 + 23070580 23070620 41 GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGCCCCACTTCC GCTGGCTGAGTAGCTGGCTGCCCACGTGGTGCCCCACTTCC < 41bp 1 0.266185667226093 1 0.212364077568054 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23070600 chr14:23070609 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_23584 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24413 DeepMRMD:1;iRNA_m5C:0.999536712157815 24414 chr6 151673725 151673725 1 + T C HNSC 151673713 + 151673693 151673733 41 CAGCAGTTTGGAAGGAAGCCCTCCTCCCTGCCTAGGTCAAG CAGCAGTTTGGAAGGAAGCCCTCCTCCCTGCCCAGGTCAAG < 41bp 1 0.100627706695523 1 0.036022961139679 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151673713 chr6:151673725 nonsynonymous SNV 0.000 0 33 hm5C_associated_SNPs_23585 0 0 1 0 0 Ribosome 1 0.500231643918363 1 0.999536712163274 hm5C_site_24414 DeepMRMD:1;iRNA_m5C:0.999536712163274 24415 chr22 46239047 46239047 1 + A G HNSC 46239049 + 46239029 46239069 41 CTGAAATCTACTAGAGACACCCCTAAGCCAGTAAGTACCCT CTGAAATCTACTAGAGACGCCCCTAAGCCAGTAAGTACCCT < 41bp 1 0.122984035735859 1 0.145946681499481 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46239049 chr22:46239047 nonsynonymous SNV 0.002 0 19 hm5C_associated_SNPs_23586 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24415 DeepMRMD:1;iRNA_m5C:0.999536712157815 24416 chr11 57575889 57575889 1 + C T HNSC 57575904 + 57575884 57575924 41 CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC CTCTGTGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC < 41bp 1 0.0903378581723821 1 0.0673407912254333 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575904 chr11:57575889 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_23587 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24416 DeepMRMD:1;iRNA_m5C:0.999536712157815 24417 chr1 26136267 26136267 1 + C T HNSC 26136269 + 26136249 26136289 41 CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCC CATCATCCTCTCCAAAGATGCCACCCACGTCCGCGACTTCC < 41bp 1 0.0407452325558459 1 0.0585837066173553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136269 chr1:26136267 synonymous SNV . 0 19 hm5C_associated_SNPs_23588 0 0 1 0 2 unknown 1 0.500232064550055 1 0.99953587089989 hm5C_site_24417 DeepMRMD:1;iRNA_m5C:0.99953587089989 24418 chr1 26136267 26136267 1 + C T HNSC 26136270 + 26136250 26136290 41 ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCG ATCATCCTCTCCAAAGATGCCACCCACGTCCGCGACTTCCG < 41bp 1 0.173585808931669 1 0.0296973884105682 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136270 chr1:26136267 synonymous SNV . 0 18 hm5C_associated_SNPs_23589 0 0 1 0 2 unknown 1 0.500233235488789 1 0.999533529022423 hm5C_site_24418 DeepMRMD:1;iRNA_m5C:0.999533529022423 24419 chr1 26136267 26136267 1 + C T HNSC 26136273 + 26136253 26136293 41 ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCT ATCCTCTCCAAAGATGCCACCCACGTCCGCGACTTCCGGCT < 41bp 1 0.11682452025264 1 0.126838862895966 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136273 chr1:26136267 synonymous SNV . 0 15 hm5C_associated_SNPs_23590 0 0 1 0 2 unknown 1 0.500231652077337 1 0.999536695845325 hm5C_site_24419 DeepMRMD:1;iRNA_m5C:0.999536695845325 24420 chr1 26136267 26136267 1 + C T HNSC 26136274 + 26136254 26136294 41 TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTC TCCTCTCCAAAGATGCCACCCACGTCCGCGACTTCCGGCTC < 41bp 1 0.507910260727476 1 0.135833889245987 experiment 0.984179478545048 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136274 chr1:26136267 synonymous SNV . 0 14 hm5C_associated_SNPs_23591 0 0 1 0 2 unknown 1 0.500231643579603 1 0.999536712840794 hm5C_site_24420 DeepMRMD:1;iRNA_m5C:0.999536712840794 24421 chr10 94109493 94109493 1 + A G HNSC 94109496 + 94109476 94109516 41 CAGATCATGTCTCTGCTACTCGAATCTTGTGTGGAGCCCTT CAGATCATGTCTCTGCTGCTCGAATCTTGTGTGGAGCCCTT < 41bp 1 0.339959527243575 1 0.196446180343628 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH5 ENSG00000198060 CDS Human protein_coding chr10:94109496 chr10:94109493 nonsynonymous SNV 0.998 1 18 hm5C_associated_SNPs_23592 0 0 1 0 1 Ribosome 1 0.500231489849688 1 0.999537020300625 hm5C_site_24421 DeepMRMD:1;iRNA_m5C:0.999537020300625 24422 chr11 102094469 102094469 1 + T A HNSC 102094453 + 102094433 102094473 41 TCAGGAATTGAGAACAATGACGACCAATAGCTCAGATCCTT TCAGGAATTGAGAACAATGACGACCAATAGCTCAGAACCTT < 41bp 1 0.462305344424323 1 0.329631507396698 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YAP1 ENSG00000137693 CDS Human protein_coding chr11:102094453 chr11:102094469 nonsynonymous SNV 0.993 3 37 hm5C_associated_SNPs_23593 0 0 1 0 0 Ribosome 1 0.500231643921088 1 0.999536712157825 hm5C_site_24422 DeepMRMD:1;iRNA_m5C:0.999536712157825 24423 chr22 31673101 31673101 1 + A G HNSC 31673093 + 31673073 31673113 41 CTGCTGGACAAGATCCGGGCCATGCAGAAGCTGAGCACACC CTGCTGGACAAGATCCGGGCCATGCAGAGGCTGAGCACACC < 41bp 1 0.0710462146753037 1 0.0217837393283844 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31673093 chr22:31673101 nonsynonymous SNV 0.281 2 29 hm5C_associated_SNPs_23594 0 0 1 0 0 Cytosol 1 0.500231643799802 1 0.999536712400397 hm5C_site_24423 DeepMRMD:1;iRNA_m5C:0.999536712400397 24424 chr16 24580555 24580555 1 + A G HNSC 24580557 + 24580537 24580577 41 TAAAGGTTATGCTGCTGGAGCACAGCCTAGACCCTCAGCAA TAAAGGTTATGCTGCTGGGGCACAGCCTAGACCCTCAGCAA < 41bp 1 0.234289939548361 1 0.269616782665253 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBBP6 ENSG00000122257 CDS Human protein_coding chr16:24580557 chr16:24580555 synonymous SNV . 0 19 hm5C_associated_SNPs_23595 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24424 DeepMRMD:1;iRNA_m5C:0.999536712157815 24425 chr17 65735667 65735667 1 + G A HNSC 65735673 + 65735653 65735693 41 TTCCTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT TTCCTGTACCTGAAATGTAGCGAAAATGCTACTATGACTCT < 41bp 1 0.652290589247688 1 0.687578856945038 experiment 0.695418821504623 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735673 chr17:65735667 synonymous SNV . 0 15 hm5C_associated_SNPs_23596 0 0 1 0 2 Nucleus 1 0.500231643921092 0.624842286109924 0.999536712157815 hm5C_site_24425 DeepMRMD:0.624842286109924;iRNA_m5C:0.999536712157815 24426 chr20 37144935 37144935 1 + T C HNSC 37144939 + 37144919 37144959 41 GCAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC GCAAGAATTGAATCAGCATCCCTGCCTTAAACATCTGCCTC < 41bp 1 0.10366367357344 1 0.140672743320465 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37144939 chr20:37144935 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_23597 0 0 1 0 1 Nucleus 1 0.500231644090128 1 0.999536711819744 hm5C_site_24426 DeepMRMD:1;iRNA_m5C:0.999536711819744 24427 chr12 54394074 54394074 1 + T C HNSC 54394072 + 54394052 54394092 41 GGTTTCCGGCCACCGGGGCTCATCCCGCCGCCGCCAGACCC GGTTTCCGGCCACCGGGGCTCACCCCGCCGCCGCCAGACCC < 41bp 1 0.49971415755613 1 0.0817683935165405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54394072 chr12:54394074 synonymous SNV . 0 23 hm5C_associated_SNPs_23598 0 0 1 0 0 chromatin 1 0.500231642785715 1 0.99953671442857 hm5C_site_24427 DeepMRMD:1;iRNA_m5C:0.99953671442857 24428 chr17 4859899 4859899 1 + G A HNSC 4859885 + 4859865 4859905 41 CAGGTGCAAACTGGCTCAGTCTAATGGCTGGGGGGTGATGG CAGGTGCAAACTGGCTCAGTCTAATGGCTGGGGGATGATGG < 41bp 1 0.312665285051515 1 0.13178938627243 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859885 chr17:4859899 nonsynonymous SNV 0.996 4 35 hm5C_associated_SNPs_23599 0 0 1 0 2 nucleus 1 0.500231643932912 1 0.999536712134177 hm5C_site_24428 DeepMRMD:1;iRNA_m5C:0.999536712134177 24429 chr16 24835045 24835045 1 + G A HNSC 24835030 + 24835010 24835050 41 ATTCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCC ATTCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCAACCCC < 41bp 1 0.139192746585611 1 0.157420575618744 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835030 chr16:24835045 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_23600 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24429 DeepMRMD:1;iRNA_m5C:0.999536712157815 24430 chr16 24835045 24835045 1 + G A HNSC 24835031 + 24835011 24835051 41 TTCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCC TTCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCAACCCCC < 41bp 1 0.512230092096315 1 0.328104138374329 experiment 0.975539815807371 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835031 chr16:24835045 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_23601 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24430 DeepMRMD:1;iRNA_m5C:0.999536712157815 24431 chr16 24835045 24835045 1 + G A HNSC 24835032 + 24835012 24835052 41 TCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCG TCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCAACCCCCG < 41bp 1 0.67627479038177 1 0.264687895774841 experiment 0.647450419236459 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835032 chr16:24835045 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_23602 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24431 DeepMRMD:1;iRNA_m5C:0.999536712157815 24432 chr16 24835045 24835045 1 + G A HNSC 24835033 + 24835013 24835053 41 CCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCGA CCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCAACCCCCGA < 41bp 1 0.230809469036997 1 0.267115652561188 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835033 chr16:24835045 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_23603 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24432 DeepMRMD:1;iRNA_m5C:0.999536712157815 24433 chr16 24835045 24835045 1 + G A HNSC 24835034 + 24835014 24835054 41 CACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCGAG CACAAGCCTGTGGGGTCCCCCAAGCAGCAGCAACCCCCGAG < 41bp 1 0.483887807435404 1 0.479823082685471 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835034 chr16:24835045 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_23604 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24433 DeepMRMD:1;iRNA_m5C:0.999536712157815 24434 chr7 148876542 148876542 1 + G A HNSC 148876555 + 148876535 148876575 41 AGCACCTGCTGAACCACCGGCGGCTGCACACAGGCGAGCGG AGCACCTACTGAACCACCGGCGGCTGCACACAGGCGAGCGG < 41bp 1 0.397788534238788 1 0.697978973388672 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148876555 chr7:148876542 synonymous SNV . 0 8 hm5C_associated_SNPs_23605 0 0 0 0 0 chromatin 1 0.500231643918384 0.604042053222656 0.999536712163233 hm5C_site_24434 DeepMRMD:0.604042053222656;iRNA_m5C:0.999536712163233 24435 chr7 129064949 129064949 1 + A G HNSC 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGCTCCTGAGGGTCGCTATGAGCAGGATGTCTAC < 41bp 1 0.609728072709574 1 0.764081478118896 experiment 0.780543854580853 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064949 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_23606 0 0 0 0 2 chromatin 1 0.500231641008799 0.471837043762208 0.999536717982402 hm5C_site_24435 DeepMRMD:0.471837043762208;iRNA_m5C:0.999536717982402 24436 chr9 131846992 131846992 1 + T G HNSC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGGATTTGTCATCGTCGGTTTCGTGACCCT < 41bp 1 0.55111534087748 1 0.435487568378448 experiment 0.897769318245041 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131846992 nonsynonymous SNV 0.920 1 14 hm5C_associated_SNPs_23607 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24436 DeepMRMD:1;iRNA_m5C:0.999536712157815 24437 chr1 145304609 145304609 1 + A G HNSC 145304596 + 145304576 145304616 41 GGAAGACAAAGTCGACTCAACTCTCATTGGCTCATCCTCTC GGAAGACAAAGTCGACTCAACTCTCATTGGCTCGTCCTCTC < 41bp 1 0.0838330953400775 1 0.0429812073707581 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBPF10 ENSG00000163386 CDS Human other chr1:145304596 chr1:145304609 synonymous SNV . 0 34 hm5C_associated_SNPs_23608 0 0 0 0 0 chromatin 1 0.500231614889575 1 0.999536770220851 hm5C_site_24437 DeepMRMD:1;iRNA_m5C:0.999536770220851 24438 chr5 128440948 128440948 1 + C T HNSC 128440946 + 128440926 128440966 41 TACCCTAAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT TACCCTAAAGGTCTTGGGAGCATGGTTCAAGAAATTGATTT < 41bp 1 0.35012795387669 1 0.35261207818985 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440946 chr5:128440948 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_23609 0 0 1 0 1 Ribosome 1 0.500231643920872 1 0.999536712158256 hm5C_site_24438 DeepMRMD:1;iRNA_m5C:0.999536712158256 24439 chr16 3712055 3712055 1 + G A HNSC 3712045 - 3712025 3712065 41 CCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG CCTGCGCATGTAGCAGCTGGCCAAGACCCAGGAGGAGCGCG < 41bp 1 0.284871799386461 1 0.306971162557602 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712045 chr16:3712055 stopgain 1.000 1 11 hm5C_associated_SNPs_23610 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24439 DeepMRMD:1;iRNA_m5C:0.999536712157815 24440 chr16 3712055 3712055 1 + G A HNSC 3712049 - 3712029 3712069 41 ACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAG ACTTCCTGCGCATGTAGCAGCTGGCCAAGACCCAGGAGGAG < 41bp 1 0.517694750395805 1 0.788605272769928 experiment 0.964610499208389 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712049 chr16:3712055 stopgain 1.000 1 15 hm5C_associated_SNPs_23611 0 0 1 0 2 Endoplasmic reticulum 1 0.500231639213774 0.422789454460144 0.999536721572452 hm5C_site_24440 DeepMRMD:0.422789454460144;iRNA_m5C:0.999536721572452 24441 chr16 3712055 3712055 1 + G A HNSC 3712061 - 3712041 3712081 41 GGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAG GGGCTGCCCGCCACTTCCTGCGCATGTAGCAGCTGGCCAAG < 41bp 1 0.62276636825412 1 0.0842702090740204 experiment 0.754467263491761 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712061 chr16:3712055 stopgain 1.000 1 27 hm5C_associated_SNPs_23612 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644929418 1 0.999536710141165 hm5C_site_24441 DeepMRMD:1;iRNA_m5C:0.999536710141165 24442 chr16 3712055 3712055 1 + G A HNSC 3712068 - 3712048 3712088 41 GAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCT GAGATGGGGGCTGCCCGCCACTTCCTGCGCATGTAGCAGCT < 41bp 1 0.323443111851471 1 0.627379357814789 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712068 chr16:3712055 stopgain 1.000 1 34 hm5C_associated_SNPs_23613 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.745241284370422 0.999536712157816 hm5C_site_24442 DeepMRMD:0.745241284370422;iRNA_m5C:0.999536712157816 24443 chr16 3712055 3712055 1 + G A HNSC 3712074 - 3712054 3712094 41 GTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCA GTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGCGCATGTA < 41bp 1 0.493989227693304 1 0.197330206632614 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712074 chr16:3712055 stopgain 1.000 1 40 hm5C_associated_SNPs_23614 0 0 1 0 2 Endoplasmic reticulum 1 0.500231607895901 1 0.999536784208197 hm5C_site_24443 DeepMRMD:1;iRNA_m5C:0.999536784208197 24444 chr14 102445732 102445732 1 + A G HNSC 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCGGGTCCTTACACTCGGTGAAGACTCGCCCTACGA < 41bp 1 0.255873689943035 1 0.823917150497437 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445732 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_23615 0 0 1 0 2 Cytosol 1 0.500231643921093 0.352165699005126 0.999536712157815 hm5C_site_24444 DeepMRMD:0.352165699005126;iRNA_m5C:0.999536712157815 24445 chr1 43903291 43903291 1 + C T HNSC 43903277 + 43903257 43903297 41 CTTTCCCAGGCTCCTAGAGACATCCTGCAGTGACCGGCCAT CTTTCCCAGGCTCCTAGAGACATCCTGCAGTGACTGGCCAT < 41bp 1 0.0506767727775506 1 0.0317246913909912 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43903277 chr1:43903291 nonsynonymous SNV 0.923 2 35 hm5C_associated_SNPs_23616 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24445 DeepMRMD:1;iRNA_m5C:0.999536712157815 24446 chr5 65118660 65118660 1 + G T HNSC 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGGGGATCTCTGGACTGCATGGACATGC < 41bp 1 0.361363496945878 1 0.189240783452988 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118660 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_23617 0 0 1 0 1 Ribosome 1 0.500231642041149 1 0.999536715917703 hm5C_site_24446 DeepMRMD:1;iRNA_m5C:0.999536715917703 24447 chr5 176710803 176710803 1 + G A HNSC 176710791 + 176710771 176710811 41 TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTCCC TTCTTTTGGAATTCTAGGACCGAATCATTGATACTGGTCCC < 41bp 1 0.0766587117415199 1 0.241399437189102 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176710791 chr5:176710803 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_23618 0 0 1 0 1 Nucleus 1 0.500231643923203 1 0.999536712153593 hm5C_site_24447 DeepMRMD:1;iRNA_m5C:0.999536712153593 24448 chr2 71795363 71795363 1 + C A HNSC 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGGAACTGGGGCACAACGGGCCTCACCTACCACAAGTTTTC < 41bp 1 0.114444542324304 1 0.0980856716632843 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795363 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_23619 0 0 0 0 1 Nucleus 1 0.500231643648707 1 0.999536712702586 hm5C_site_24448 DeepMRMD:1;iRNA_m5C:0.999536712702586 24449 chr16 57485028 57485028 1 + G C HNSC 57485048 + 57485028 57485068 41 GAAGCAGCAGCCTCCCAACTCATTTTCTCAGCAGCATTCTG CAAGCAGCAGCCTCCCAACTCATTTTCTCAGCAGCATTCTG < 41bp 1 0.109742669451532 1 0.0326958000659943 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57485048 chr16:57485028 nonsynonymous SNV 0.993 0 1 hm5C_associated_SNPs_23620 0 0 1 0 2 Ribosome 1 0.500231670810737 1 0.999536658378527 hm5C_site_24449 DeepMRMD:1;iRNA_m5C:0.999536658378527 24450 chr5 102472513 102472513 1 + C T HNSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATTTCATACAAGATAGG < 41bp 1 0.432244354591953 1 0.164623320102692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472513 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_23621 0 0 1 2 2 Cytosol 1 0.500231643921504 1 0.999536712156992 hm5C_site_24450 DeepMRMD:1;iRNA_m5C:0.999536712156992 24451 chr9 2186186 2186186 1 + G A HNSC 2186182 + 2186162 2186202 41 GAAGAGAGTGAGGATGAAAGCAATGAAGAGGAGGAAGAGGA GAAGAGAGTGAGGATGAAAGCAATAAAGAGGAGGAAGAGGA < 41bp 1 0.473999258377491 1 0.238843768835068 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186182 chr9:2186186 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_23623 0 0 1 0 1 Nucleus 1 0.500231647341379 1 0.999536705317242 hm5C_site_24451 DeepMRMD:1;iRNA_m5C:0.999536705317242 24452 chr12 6637460 6637460 1 + C G HNSC 6637450 + 6637430 6637470 41 ACTGGGGATCTGGCCATCCGCTTTCCCAATCTGGTGGACCC ACTGGGGATCTGGCCATCCGCTTTCCCAATGTGGTGGACCC < 41bp 1 0.0857950473430662 1 0.0914885103702545 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6637450 chr12:6637460 nonsynonymous SNV 0.998 1 31 hm5C_associated_SNPs_23626 0 0 1 0 0 Nucleus 1 0.500232665874134 1 0.999534668251732 hm5C_site_24452 DeepMRMD:1;iRNA_m5C:0.999534668251732 24453 chr11 6412670 6412670 1 + G A HNSC 6412678 + 6412658 6412698 41 GTGCAATCTGCTGAAGATAGCACCACCTGCCGTGTGCCAAT GTGCAATCTGCTAAAGATAGCACCACCTGCCGTGTGCCAAT < 41bp 1 0.594073793567355 1 0.229750514030457 experiment 0.81185241286529 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6412678 chr11:6412670 synonymous SNV . 0 13 hm5C_associated_SNPs_23627 0 0 0 1 3 Endoplasmic reticulum 1 0.500231649133842 1 0.999536701732315 hm5C_site_24453 DeepMRMD:1;iRNA_m5C:0.999536701732315 24454 chr2 233671332 233671332 1 + C T HNSC 233671347 + 233671327 233671367 41 GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATG GGGTTTCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATG < 41bp 1 0.129000723205626 1 0.0683043897151947 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671347 chr2:233671332 nonsynonymous SNV 0.998 5 6 hm5C_associated_SNPs_23628 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24454 DeepMRMD:1;iRNA_m5C:0.999536712157815 24455 chr2 233671332 233671332 1 + C T HNSC 233671348 + 233671328 233671368 41 GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGG GGTTTCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGG < 41bp 1 0.192804414992795 1 0.158861249685287 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671348 chr2:233671332 nonsynonymous SNV 0.998 5 5 hm5C_associated_SNPs_23629 0 0 1 0 1 Nucleus 1 0.500231643921087 1 0.999536712157827 hm5C_site_24455 DeepMRMD:1;iRNA_m5C:0.999536712157827 24456 chr2 233671332 233671332 1 + C T HNSC 233671351 + 233671331 233671371 41 TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAA TTCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAA < 41bp 1 0.0853990043109158 1 0.341053009033203 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671351 chr2:233671332 nonsynonymous SNV 0.998 5 2 hm5C_associated_SNPs_23630 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24456 DeepMRMD:1;iRNA_m5C:0.999536712157815 24457 chr19 48220235 48220235 1 + C T HNSC 48220221 + 48220201 48220241 41 GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCCGCAAA GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTTCGCAAA < 41bp 1 0.550963921920719 1 0.564184367656708 experiment 0.898072156158561 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EHD2 ENSG00000024422 CDS Human protein_coding chr19:48220221 chr19:48220235 synonymous SNV . 0 35 hm5C_associated_SNPs_23631 0 0 0 0 1 Nucleus 1 0.500231643921092 0.871631264686584 0.999536712157815 hm5C_site_24457 DeepMRMD:0.871631264686584;iRNA_m5C:0.999536712157815 24458 chr18 29116340 29116340 1 + C G HNSC 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCCGTGATTGACAAACCACCTGGCATGGCAGAAAAA < 41bp 1 0.134311224427132 1 0.145808339118958 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116340 synonymous SNV . 0 11 hm5C_associated_SNPs_23632 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921112 1 0.999536712157777 hm5C_site_24458 DeepMRMD:1;iRNA_m5C:0.999536712157777 24459 chr18 29116340 29116340 1 + C G HNSC 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCCGTGATTGACAAACCACCTGGCATGGCAGAAAAATGGA < 41bp 1 0.461789158323217 1 0.119473367929459 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116340 synonymous SNV . 0 7 hm5C_associated_SNPs_23633 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921095 1 0.99953671215781 hm5C_site_24459 DeepMRMD:1;iRNA_m5C:0.99953671215781 24460 chr1 222801826 222801826 1 + G C HNSC 222801845 + 222801825 222801865 41 AGATAGCAAACAGGGGAAACCACAGTCAGCAACAGATTATA ACATAGCAAACAGGGGAAACCACAGTCAGCAACAGATTATA < 41bp 1 0.578611090389874 1 0.206806033849716 experiment 0.842777819220252 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222801845 chr1:222801826 nonsynonymous SNV 0.001 0 2 hm5C_associated_SNPs_23634 0 0 1 0 0 Endoplasmic reticulum 1 0.5002316453468 1 0.999536709306399 hm5C_site_24460 DeepMRMD:1;iRNA_m5C:0.999536709306399 24461 chr3 47451515 47451515 1 + G A HNSC 47451521 + 47451501 47451541 41 CAGGAGACCCCCCTGAGGAGCTGCGCAGCCTCCCCCCTGAC CAGGAGACCCCCCTAAGGAGCTGCGCAGCCTCCCCCCTGAC < 41bp 1 0.519585501533264 1 0.319505244493484 experiment 0.960828996933472 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47451521 chr3:47451515 nonsynonymous SNV 0.574 3 15 hm5C_associated_SNPs_23635 0 0 1 0 1 chromatin 1 0.500231650797524 1 0.999536698404952 hm5C_site_24461 DeepMRMD:1;iRNA_m5C:0.999536698404952 24462 chr19 55994342 55994342 1 + C A HNSC 55994334 + 55994314 55994354 41 AGCGCGTGCACACGGGCGAGCGGCCCTTCCGCTGCCCGCTC AGCGCGTGCACACGGGCGAGCGGCCCTTACGCTGCCCGCTC < 41bp 1 0.522229421469819 1 0.707824885845184 experiment 0.955541157060363 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF628 ENSG00000197483 CDS Human protein_coding chr19:55994334 chr19:55994342 nonsynonymous SNV 0.998 1 29 hm5C_associated_SNPs_23636 0 0 0 0 0 exosome 1 0.500231644275595 0.584350228309632 0.99953671144881 hm5C_site_24462 DeepMRMD:0.584350228309632;iRNA_m5C:0.99953671144881 24463 chr11 62656097 62656097 1 + C G HNSC 62656090 + 62656070 62656110 41 CAGCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAACG CAGCCAGGCCGTGAGGAGGGCTCCCCTGTTGAGCTGGAACG < 41bp 1 0.294026496229082 1 0.37759804725647 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62656090 chr11:62656097 nonsynonymous SNV 0.015 1 28 hm5C_associated_SNPs_23637 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24463 DeepMRMD:1;iRNA_m5C:0.999536712157815 24464 chr11 62656097 62656097 1 + C G HNSC 62656092 + 62656072 62656112 41 GCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAACGCC GCCAGGCCGTGAGGAGGGCTCCCCTGTTGAGCTGGAACGCC < 41bp 1 0.475013565745289 1 0.0385479629039764 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62656092 chr11:62656097 nonsynonymous SNV 0.015 1 26 hm5C_associated_SNPs_23638 0 0 1 0 0 Nucleus 1 0.500231643921136 1 0.999536712157729 hm5C_site_24464 DeepMRMD:1;iRNA_m5C:0.999536712157729 24465 chr12 8196363 8196363 1 + G A HNSC 8196351 + 8196331 8196371 41 TTTCCCGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT TTTCCCGAAAGAGAAGACACCCTCCAGATGATAATGTAAGT < 41bp 1 0.0181714279093078 1 0.0843708217144012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196351 chr12:8196363 nonsynonymous SNV 0.977 1 33 hm5C_associated_SNPs_23639 0 0 0 0 1 nucleoplasm 1 0.500231643921083 1 0.999536712157833 hm5C_site_24465 DeepMRMD:1;iRNA_m5C:0.999536712157833 24466 chr14 21963395 21963395 1 + C G HNSC 21963397 + 21963377 21963417 41 TCTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAA TCTTCTCACAGGTTGAGTGTCCTTCTCAGATGGATGTTGAA < 41bp 1 0.0185690989811523 1 0.0477499663829803 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963397 chr14:21963395 nonsynonymous SNV 0.998 1 19 hm5C_associated_SNPs_23640 0 0 1 0 1 Ribosome 1 0.50022210345817 1 0.999555793083661 hm5C_site_24466 DeepMRMD:1;iRNA_m5C:0.999555793083661 24467 chr14 21963395 21963395 1 + C G HNSC 21963398 + 21963378 21963418 41 CTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAAT CTTCTCACAGGTTGAGTGTCCTTCTCAGATGGATGTTGAAT < 41bp 1 0.0903286193412967 1 0.0311934649944305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963398 chr14:21963395 nonsynonymous SNV 0.998 1 18 hm5C_associated_SNPs_23641 0 0 1 0 1 Ribosome 1 0.500231643943189 1 0.999536712113622 hm5C_site_24467 DeepMRMD:1;iRNA_m5C:0.999536712113622 24468 chr17 62223821 62223821 1 + G C HNSC 62223805 + 62223785 62223825 41 GCCGCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCGAGCG GCCGCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCCAGCG < 41bp 1 0.37118570885047 1 0.29120272397995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223805 chr17:62223821 . . 0 37 hm5C_associated_SNPs_23642 0 0 1 1 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_24468 DeepMRMD:1;iRNA_m5C:0.999536712157814 24469 chr17 62223821 62223821 1 + G C HNSC 62223808 + 62223788 62223828 41 GCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCGAGCGACA GCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCCAGCGACA < 41bp 1 0.0324841652455198 1 0.0217791199684143 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223808 chr17:62223821 . . 0 34 hm5C_associated_SNPs_23643 0 0 1 1 0 unknown 1 0.500231643921386 1 0.999536712157227 hm5C_site_24469 DeepMRMD:1;iRNA_m5C:0.999536712157227 24470 chr17 62223821 62223821 1 + G C HNSC 62223817 + 62223797 62223837 41 CCCGCGGGCGGCCTTTTTAACCGCGAGCGACAAGAAGTAAC CCCGCGGGCGGCCTTTTTAACCGCCAGCGACAAGAAGTAAC < 41bp 1 0.297867518503482 1 0.162427097558975 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223817 chr17:62223821 . . 0 25 hm5C_associated_SNPs_23644 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_24470 DeepMRMD:1;iRNA_m5C:0.999536712157815 24471 chr17 62223821 62223821 1 + G C HNSC 62223827 + 62223807 62223847 41 GCCTTTTTAACCGCGAGCGACAAGAAGTAACCTGACTGTCC GCCTTTTTAACCGCCAGCGACAAGAAGTAACCTGACTGTCC < 41bp 1 0.672467296068542 1 0.330245912075043 experiment 0.655065407862915 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223827 chr17:62223821 . . 0 15 hm5C_associated_SNPs_23645 0 0 1 1 0 unknown 1 0.500413428010337 1 0.999173143979325 hm5C_site_24471 DeepMRMD:1;iRNA_m5C:0.999173143979325 24472 chr1 26883512 26883512 1 + G A HNSC 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATACCGTCGTGAGATCAAACCACCCTTCAAGCCAGC < 41bp 1 0.107808774291026 1 0.337651193141937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883512 synonymous SNV . 0 24 hm5C_associated_SNPs_23646 0 0 1 0 1 Ribosome 1 0.500231643927331 1 0.999536712145338 hm5C_site_24472 DeepMRMD:1;iRNA_m5C:0.999536712145338 24473 chr11 46400012 46400012 1 + G T HNSC 46400025 + 46400005 46400045 41 AGGTGAAGAGCTGATTGAGGCTGCCAAGAGGAACGACTTCT AGGTGAATAGCTGATTGAGGCTGCCAAGAGGAACGACTTCT < 41bp 1 0.148853613496753 1 0.0688655972480774 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400025 chr11:46400012 stopgain 1.000 0 8 hm5C_associated_SNPs_23647 0 0 1 0 2 Ribosome 1 0.500231643921089 1 0.999536712157821 hm5C_site_24473 DeepMRMD:1;iRNA_m5C:0.999536712157821 24474 chr11 86518800 86518800 1 + G A HNSC 86518805 + 86518785 86518825 41 GCATACCGCCTCCCTGTCGTCTTGCCCCAGTCTACCCTCAA GCATACCGCCTCCCTATCGTCTTGCCCCAGTCTACCCTCAA < 41bp 1 0.252107188691045 1 0.175014287233353 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRSS23 ENSG00000150687 CDS Human protein_coding chr11:86518805 chr11:86518800 nonsynonymous SNV 0.991 0 16 hm5C_associated_SNPs_23648 0 0 1 0 0 Ribosome 1 0.500231677094987 1 0.999536645810027 hm5C_site_24474 DeepMRMD:1;iRNA_m5C:0.999536645810027 24475 chr11 63994371 63994371 1 + G T HNSC 63994351 + 63994331 63994371 41 GCCTATTGGCTCTCGGGGGCCACAGCTGCTCCTGCGCCTGG GCCTATTGGCTCTCGGGGGCCACAGCTGCTCCTGCGCCTGT < 41bp 1 0.560734617225697 1 0.186352461576462 experiment 0.878530765548606 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63994351 chr11:63994371 nonsynonymous SNV 0.774 4 41 hm5C_associated_SNPs_23649 0 0 1 0 0 Ribosome 1 0.500231643690492 1 0.999536712619016 hm5C_site_24475 DeepMRMD:1;iRNA_m5C:0.999536712619016 24476 chr20 47897282 47897282 1 + A G HNSC 47897288 + 47897268 47897308 41 TTGATCTCTACACTATTGGCCAGTTTTGTCTGATGCATTGG TTGATCTCTACACTGTTGGCCAGTTTTGTCTGATGCATTGG < 41bp 1 0.0620820693855751 1 0.109096854925156 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12 ENSG00000212304 ncRNA_exonic Human snoRNA chr20:47897288 chr20:47897282 . . 0 15 hm5C_associated_SNPs_23650 0 0 1 3 0 unknown 1 0.500231643921089 1 0.999536712157822 hm5C_site_24476 DeepMRMD:1;iRNA_m5C:0.999536712157822 24477 chr16 70575707 70575707 1 + G A HNSC 70575721 + 70575701 70575741 41 TGAGTTGGACAGCCTCTCTCCCATTCTGTTTTGCCAGGTTG TGAGTTAGACAGCCTCTCTCCCATTCTGTTTTGCCAGGTTG < 41bp 1 0.0378802240669931 1 0.0654820203781128 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70575721 chr16:70575707 synonymous SNV . 0 7 hm5C_associated_SNPs_23652 0 0 1 0 1 Cytosol 1 0.500231643824773 1 0.999536712350454 hm5C_site_24477 DeepMRMD:1;iRNA_m5C:0.999536712350454 24478 chr8 48874211 48874211 1 + T C HNSC 48874231 + 48874211 48874251 41 TTTCCAGCCCTCCCCAAATGCATTCTTCAGGTGCGTGTCTG CTTCCAGCCCTCCCCAAATGCATTCTTCAGGTGCGTGTCTG < 41bp 1 0.0910876436187767 1 0.0322157442569733 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874231 chr8:48874211 nonsynonymous SNV 0.565 1 1 hm5C_associated_SNPs_23653 0 0 1 0 1 Cytosol 1 0.50023164140626 1 0.99953671718748 hm5C_site_24478 DeepMRMD:1;iRNA_m5C:0.99953671718748 24479 chr19 15224386 15224386 1 + G A HNSC 15224376 + 15224356 15224396 41 CCTGTCTCCCTTCAGATCCCCGCCTGCCCCGACAATCTCCA CCTGTCTCCCTTCAGATCCCCGCCTGCCCCAACAATCTCCA < 41bp 1 0.239940060997928 1 0.0813676118850708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15224376 chr19:15224386 nonsynonymous SNV 0.001 0 31 hm5C_associated_SNPs_23654 0 0 1 0 1 exosome 1 0.500258972544345 1 0.999482054911311 hm5C_site_24479 DeepMRMD:1;iRNA_m5C:0.999482054911311 24480 chr3 158519957 158519957 1 + G A HNSC 158519940 + 158519920 158519960 41 CTCTCCGTCTCCTGCGGGCGCAATGGAGGAGGAGGATGAGG CTCTCCGTCTCCTGCGGGCGCAATGGAGGAGGAGGATAAGG < 41bp 1 0.4579908252992 1 0.454549342393875 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158519940 chr3:158519957 nonsynonymous SNV 0.068 0 38 hm5C_associated_SNPs_23655 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24480 DeepMRMD:1;iRNA_m5C:0.999536712157815 24481 chr5 21491520 21491520 1 + A G HNSC 21491518 + 21491498 21491538 41 TCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGG TCAGAAAACAAAGTCGTGGACAGCCAGGCTGGGACCCAGGG < 41bp 1 0.238487082905927 1 0.123423993587494 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21491518 chr5:21491520 . . 0 23 hm5C_associated_SNPs_23656 0 0 1 0 2 unknown 1 0.500231643912114 1 0.999536712175772 hm5C_site_24481 DeepMRMD:1;iRNA_m5C:0.999536712175772 24482 chr11 722485 722485 1 + G A HNSC 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGCCGTGGACTTCCTGCGCAGCCACCTGGTCCC < 41bp 1 0.238250833059072 1 0.0949169397354126 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722485 nonsynonymous SNV 0.237 2 28 hm5C_associated_SNPs_23657 0 0 1 0 2 Cytosol 1 0.50023164391981 1 0.99953671216038 hm5C_site_24482 DeepMRMD:1;iRNA_m5C:0.99953671216038 24483 chr12 27788028 27788028 1 + G C HNSC 27788020 + 27788000 27788040 41 CCCAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCAGA CCCAGATTCAACAGCAGAAACGCTTGTTCAATGGCTTCAGA < 41bp 1 0.320564714734478 1 0.0701539218425751 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27788020 chr12:27788028 nonsynonymous SNV 0.628 2 29 hm5C_associated_SNPs_23658 0 0 1 0 1 Nucleus 1 0.500231631751075 1 0.99953673649785 hm5C_site_24483 DeepMRMD:1;iRNA_m5C:0.99953673649785 24484 chr12 104335647 104335647 1 + A T HNSC 104335627 + 104335607 104335647 41 AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGCGA AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGCGT < 41bp 1 0.326486273248703 1 0.44223827123642 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104335627 chr12:104335647 nonsynonymous SNV 0.988 4 41 hm5C_associated_SNPs_23659 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24484 DeepMRMD:1;iRNA_m5C:0.999536712157815 24485 chr12 112229161 112229161 1 + G T HNSC 112229155 + 112229135 112229175 41 ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATT ACATTGTGCCTGGATTTGGCCCCACGTCTGGGGCCGCCATT < 41bp 1 0.152524362744852 1 0.0296044051647186 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229155 chr12:112229161 nonsynonymous SNV 0.007 2 27 hm5C_associated_SNPs_23660 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24485 DeepMRMD:1;iRNA_m5C:0.999536712157815 24486 chr12 112229161 112229161 1 + G T HNSC 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCACGTCTGGGGCCGCCATTG < 41bp 1 0.261809412834105 1 0.0599614977836609 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229156 chr12:112229161 nonsynonymous SNV 0.007 2 26 hm5C_associated_SNPs_23661 0 0 1 0 2 chromatin 1 0.500231643806746 1 0.999536712386508 hm5C_site_24486 DeepMRMD:1;iRNA_m5C:0.999536712386508 24487 chr12 112229161 112229161 1 + G T HNSC 112229157 + 112229137 112229177 41 ATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGC ATTGTGCCTGGATTTGGCCCCACGTCTGGGGCCGCCATTGC < 41bp 1 0.560000932214036 1 0.300073713064194 experiment 0.879998135571928 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229157 chr12:112229161 nonsynonymous SNV 0.007 2 25 hm5C_associated_SNPs_23662 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24487 DeepMRMD:1;iRNA_m5C:0.999536712157815 24488 chr12 112229161 112229161 1 + G T HNSC 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCACGTCTGGGGCCGCCATTGCCTCCCATGAGG < 41bp 1 0.150466876205632 1 0.0572701096534729 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229168 chr12:112229161 nonsynonymous SNV 0.007 2 14 hm5C_associated_SNPs_23663 0 0 1 0 2 chromatin 1 0.500231752643316 1 0.999536494713369 hm5C_site_24488 DeepMRMD:1;iRNA_m5C:0.999536494713369 24489 chr12 112229161 112229161 1 + G T HNSC 112229169 + 112229149 112229189 41 TTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGA TTTGGCCCCACGTCTGGGGCCGCCATTGCCTCCCATGAGGA < 41bp 1 0.695657192659609 1 0.312583863735199 experiment 0.608685614680782 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229169 chr12:112229161 nonsynonymous SNV 0.007 2 13 hm5C_associated_SNPs_23664 0 0 1 0 2 chromatin 1 0.500231643680061 1 0.999536712639878 hm5C_site_24489 DeepMRMD:1;iRNA_m5C:0.999536712639878 24490 chr5 131973799 131973799 1 + G A HNSC 131973793 + 131973773 131973813 41 ATATTGAATACATAGAAATACGGTCTGATGCCGATGAAAAT ATATTGAATACATAGAAATACGGTCTAATGCCGATGAAAAT < 41bp 1 0.0878739856598559 1 0.384994029998779 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131973793 chr5:131973799 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_23665 0 0 1 0 1 Cytosol 1 0.500231643901777 1 0.999536712196446 hm5C_site_24490 DeepMRMD:1;iRNA_m5C:0.999536712196446 24491 chr10 116698023 116698023 1 + C G HNSC 116698003 + 116697983 116698023 41 CACGATGAAACAGGTCTGGGCTACAAAAGTATGGCCGCTTC CACGATGAAACAGGTCTGGGCTACAAAAGTATGGCCGCTTG < 41bp 1 0.683488527733659 1 0.394188672304153 experiment 0.633022944532682 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116698003 chr10:116698023 nonsynonymous SNV 0.000 1 41 hm5C_associated_SNPs_23666 0 0 1 0 0 Ribosome 1 0.500231114287767 1 0.999537771424467 hm5C_site_24491 DeepMRMD:1;iRNA_m5C:0.999537771424467 24492 chr19 12924254 12924254 1 + G T HNSC 12924253 + 12924233 12924273 41 CACCGATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAG CACCGATATTTCCTGGAACGCTGCCTGGAGTCAGCAACCAG < 41bp 1 0.529890559948805 1 0.0946519076824188 experiment 0.94021888010239 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924253 chr19:12924254 nonsynonymous SNV 0.509 1 22 hm5C_associated_SNPs_23667 0 0 1 0 0 Ribosome 1 0.500233431225501 1 0.999533137548997 hm5C_site_24492 DeepMRMD:1;iRNA_m5C:0.999533137548997 24493 chr12 132546772 132546772 1 + C T HNSC 132546776 + 132546756 132546796 41 AACGACTCAGGGTGTTCGAGCGGTCACTTCTGTGACAGCCT AACGACTCAGGGTGTTTGAGCGGTCACTTCTGTGACAGCCT < 41bp 1 0.0821868772199644 1 0.501779556274414 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546776 chr12:132546772 stopgain 0.990 1 17 hm5C_associated_SNPs_23669 0 0 1 0 1 Cytosol 1 0.50023164372586 0.996440887451172 0.999536712548281 hm5C_site_24493 DeepMRMD:0.996440887451172;iRNA_m5C:0.999536712548281 24494 chr20 30366776 30366776 1 + A G HNSC 30366771 + 30366751 30366791 41 AACAGATATCATTTGAGGAGCAAGAAGGATGATATTAGTAA AACAGATATCATTTGAGGAGCAAGAGGGATGATATTAGTAA < 41bp 1 0.559487816329075 1 0.432372808456421 experiment 0.88102436734185 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30366771 chr20:30366776 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_23670 0 0 1 0 1 Cytosol 1 0.50023162641129 1 0.99953674717742 hm5C_site_24494 DeepMRMD:1;iRNA_m5C:0.99953674717742 24495 chr2 238671551 238671551 1 + G A HNSC 238671535 + 238671515 238671555 41 CAGGTTGAGTCAAATGAGGTCATGGGTGCACCAGATGACAG CAGGTTGAGTCAAATGAGGTCATGGGTGCACCAGATAACAG < 41bp 1 0.363173957277283 1 0.507784605026245 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238671535 chr2:238671551 nonsynonymous SNV 0.001 1 37 hm5C_associated_SNPs_23671 0 0 0 0 0 Ribosome 1 0.500231644034462 0.98443078994751 0.999536711931076 hm5C_site_24495 DeepMRMD:0.98443078994751;iRNA_m5C:0.999536711931076 24496 chr11 557947 557947 1 + G A HNSC 557932 - 557912 557952 41 TGCCTCCTGCAGCTGGCCCGCTCCTCGTGGGTGGGCCGCAT TGCCTTCTGCAGCTGGCCCGCTCCTCGTGGGTGGGCCGCAT < 41bp 1 0.300529055514099 1 0.357796609401703 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:557932 chr11:557947 synonymous SNV . 0 6 hm5C_associated_SNPs_23672 0 0 0 0 2 chromatin 1 0.500231643921094 1 0.999536712157812 hm5C_site_24496 DeepMRMD:1;iRNA_m5C:0.999536712157812 24497 chr2 85133166 85133166 1 + G A HNSC 85133155 + 85133135 85133175 41 TAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCCA TAAGAAAATGGCAGACAAACCAGACATGGGGAAAATCGCCA < 41bp 1 0.443666571702849 1 0.118658393621445 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMSB10 ENSG00000034510 CDS Human protein_coding chr2:85133155 chr2:85133166 nonsynonymous SNV 0.999 2 32 hm5C_associated_SNPs_23673 0 0 1 0 1 Ribosome 1 0.500231735653172 1 0.999536528693656 hm5C_site_24497 DeepMRMD:1;iRNA_m5C:0.999536528693656 24498 chr1 36315806 36315806 1 + A G HNSC 36315787 + 36315767 36315807 41 AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACCAT AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACCGT < 41bp 1 0.337022420499874 1 0.204346001148224 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO4 ENSG00000134698 CDS Human protein_coding chr1:36315787 chr1:36315806 nonsynonymous SNV 0.998 0 40 hm5C_associated_SNPs_23674 0 0 1 0 2 Nucleus 1 0.5002316439219 1 0.999536712156199 hm5C_site_24498 DeepMRMD:1;iRNA_m5C:0.999536712156199 24499 chr1 218504373 218504373 1 + C A HNSC 218504390 + 218504370 218504410 41 GGACAAGGAAAGTGATGGGCCAGATGACAGCAGACCAGAAT GGAAAAGGAAAGTGATGGGCCAGATGACAGCAGACCAGAAT < 41bp 1 0.407971990465249 1 0.575928151607513 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RRP15 ENSG00000067533 CDS Human protein_coding chr1:218504390 chr1:218504373 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_23675 0 0 1 0 1 Ribosome 1 0.500231643920242 0.848143696784974 0.999536712159515 hm5C_site_24499 DeepMRMD:0.848143696784974;iRNA_m5C:0.999536712159515 24500 chr8 77619832 77619832 1 + G A HNSC 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCCGGCTTGCCAGTGGTCAGCTAATGGATGATGACCTGTCC < 41bp 1 0.194690388160669 1 0.591627061367035 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619832 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_23676 0 0 0 0 1 Ribosome 1 0.500231643921092 0.81674587726593 0.999536712157815 hm5C_site_24500 DeepMRMD:0.81674587726593;iRNA_m5C:0.999536712157815 24501 chr6 130381238 130381238 1 + G T HNSC 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCTTGGA < 41bp 1 0.467675556755397 1 0.280316114425659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381238 nonsynonymous SNV 0.907 3 37 hm5C_associated_SNPs_23678 0 0 1 0 2 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_24501 DeepMRMD:1;iRNA_m5C:0.999536712157815 24502 chr12 101012273 101012273 1 + G C HNSC 101012291 + 101012271 101012311 41 TTGAGTTAGAAGAGACTTTGCTTAATACTTCTGGGCCTGAA TTCAGTTAGAAGAGACTTTGCTTAATACTTCTGGGCCTGAA < 41bp 1 0.53754493911855 1 0.428421705961227 experiment 0.9249101217629 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101012291 chr12:101012273 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_23679 0 0 1 0 2 Cytosol 1 0.500231641895794 1 0.999536716208411 hm5C_site_24502 DeepMRMD:1;iRNA_m5C:0.999536716208411 24503 chr13 50586100 50586100 1 + C G HNSC 50586083 + 50586063 50586103 41 TCTGGTAGGATGTGATGGAGCTGCTTGAAGAAGATCTCACA TCTGGTAGGATGTGATGGAGCTGCTTGAAGAAGATCTGACA < 41bp 1 0.380396647188502 1 0.0578592717647552 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM13 ENSG00000204977 CDS Human protein_coding chr13:50586083 chr13:50586100 synonymous SNV . 0 38 hm5C_associated_SNPs_23680 0 0 1 0 1 Endoplasmic reticulum 1 0.507021588561119 1 0.985956822877761 hm5C_site_24503 DeepMRMD:1;iRNA_m5C:0.985956822877761 24504 chr11 75508295 75508295 1 + G C HNSC 75508290 + 75508270 75508310 41 CATCATCGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCA CATCATCGTGGTCGGGGGTGCGGCTCAGTCTCTGAGCTCCA < 41bp 1 0.381685210910685 1 0.237920820713043 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508290 chr11:75508295 nonsynonymous SNV 0.997 4 26 hm5C_associated_SNPs_23681 0 0 1 0 2 Ribosome 1 0.500231654005574 1 0.999536691988852 hm5C_site_24504 DeepMRMD:1;iRNA_m5C:0.999536691988852 24505 chrX 73044042 73044042 1 + G C HNSC 73044044 - 73044024 73044064 41 GTTATCTATTGTGTGCCAATCTCATTGCTAGGCATTGGGGA GTTATCTATTGTGTGCCAATCTGATTGCTAGGCATTGGGGA < 41bp 1 0.142175337932545 1 0.227012425661087 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044044 chrX:73044042 . . 0 23 hm5C_associated_SNPs_23682 0 0 1 1 0 unknown 1 0.500231565549429 1 0.999536868901141 hm5C_site_24505 DeepMRMD:1;iRNA_m5C:0.999536868901141 24506 chr3 183882067 183882067 1 + G A HNSC 183882074 + 183882054 183882094 41 GCTGGTGTCAGCTGAGGGCTCACACCCAGACCCAGCCCCCT GCTGGTGTCAGCTAAGGGCTCACACCCAGACCCAGCCCCCT < 41bp 1 0.203788309907946 1 0.0501206815242767 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882074 chr3:183882067 nonsynonymous SNV 0.976 2 14 hm5C_associated_SNPs_23683 0 0 1 0 1 Cytosol 1 0.500231645121286 1 0.999536709757428 hm5C_site_24506 DeepMRMD:1;iRNA_m5C:0.999536709757428 24507 chr4 77660159 77660159 1 + C G HNSC 77660170 + 77660150 77660190 41 CTGGCATCTCTGGCCGGGAGCGTTCAGGCTCCATGGACAAT CTGGCATCTGTGGCCGGGAGCGTTCAGGCTCCATGGACAAT < 41bp 1 0.0166885578818644 1 0.0898192822933197 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660170 chr4:77660159 nonsynonymous SNV 0.001 1 10 hm5C_associated_SNPs_23684 0 0 0 0 0 Ribosome 1 0.499987631323537 1 1 hm5C_site_24507 DeepMRMD:1;iRNA_m5C:1 24508 chr1 228566495 228566495 1 + G A HNSC 228566484 + 228566464 228566504 41 TACAAGAGGCACAACCTGGCCCAGGTGCGCTGAGGGTCGCC TACAAGAGGCACAACCTGGCCCAGGTGCGCTAAGGGTCGCC < 41bp 1 0.112214215356911 1 0.677424311637878 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228566484 chr1:228566495 synonymous SNV . 0 32 hm5C_associated_SNPs_23686 0 0 1 0 0 Ribosome 1 0.500231632643565 0.645151376724244 0.99953673471287 hm5C_site_24508 DeepMRMD:0.645151376724244;iRNA_m5C:0.99953673471287 24509 chr17 79080653 79080653 1 + G T HNSC 79080643 + 79080623 79080663 41 CGCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCT CGCCGCCTCCCGGGCCTTCCCCGCCCAGACTGCCAGCGGCT < 41bp 1 0.395245401309874 1 0.209671437740326 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080643 chr17:79080653 synonymous SNV . 0 31 hm5C_associated_SNPs_23687 0 0 1 0 1 Cytosol 1 0.50023164392107 1 0.99953671215786 hm5C_site_24509 DeepMRMD:1;iRNA_m5C:0.99953671215786 24510 chr17 79080653 79080653 1 + G T HNSC 79080644 + 79080624 79080664 41 GCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCTT GCCGCCTCCCGGGCCTTCCCCGCCCAGACTGCCAGCGGCTT < 41bp 1 0.540487006069488 1 0.120441198348999 experiment 0.919025987861024 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080644 chr17:79080653 synonymous SNV . 0 30 hm5C_associated_SNPs_23688 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24510 DeepMRMD:1;iRNA_m5C:0.999536712157815 24511 chr6 25983648 25983648 1 + G A HNSC 25983632 + 25983612 25983652 41 GGAAAATGTGCAGAGGGGCACTGGCATGAAGCAAGAGCCTC GGAAAATGTGCAGAGGGGCACTGGCATGAAGCAAGAACCTC < 41bp 1 0.524056277739931 1 0.237971395254135 experiment 0.951887444520138 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM38 ENSG00000112343 CDS Human protein_coding chr6:25983632 chr6:25983648 synonymous SNV . 0 37 hm5C_associated_SNPs_23689 0 0 1 0 0 Cytosol 1 0.500231643920997 1 0.999536712158007 hm5C_site_24511 DeepMRMD:1;iRNA_m5C:0.999536712158007 24512 chr15 42579976 42579976 1 + G C HNSC 42579991 + 42579971 42580011 41 GATTTGAAGTTCCGGATGTCCTCACAAGCAAGCCAAGCACT GATTTCAAGTTCCGGATGTCCTCACAAGCAAGCCAAGCACT < 41bp 1 0.226949476822789 1 0.323035955429077 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GANC ENSG00000214013 CDS Human protein_coding chr15:42579991 chr15:42579976 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_23690 0 0 0 0 2 chromatin 1 0.500231659479763 1 0.999536681040474 hm5C_site_24512 DeepMRMD:1;iRNA_m5C:0.999536681040474 24513 chr19 34859488 34859488 1 + G T HNSC 34859485 + 34859465 34859505 41 TATATCCTGACCGTAATCCCCAGGGTCGAGCCGTGCTGCAC TATATCCTGACCGTAATCCCCAGTGTCGAGCCGTGCTGCAC < 41bp 1 0.330550036443258 1 0.221190065145493 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34859485 chr19:34859488 nonsynonymous SNV 0.018 3 24 hm5C_associated_SNPs_23691 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24513 DeepMRMD:1;iRNA_m5C:0.999536712157815 24514 chr1 183519946 183519946 1 + C G HNSC 183519963 + 183519943 183519983 41 GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC GCTGTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC < 41bp 1 0.37446648568898 1 0.15685510635376 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519963 chr1:183519946 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_23692 0 0 1 0 1 Cytosol 1 0.500231643924585 1 0.999536712150831 hm5C_site_24514 DeepMRMD:1;iRNA_m5C:0.999536712150831 24515 chr1 39908187 39908187 1 + G C HNSC 39908204 + 39908184 39908224 41 AGAGACCAATAAGTGGAGACCCAAAAGTCATTGAAGTTGAG AGACACCAATAAGTGGAGACCCAAAAGTCATTGAAGTTGAG < 41bp 1 0.0565123405318971 1 0.256118655204773 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39908204 chr1:39908187 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_23693 0 0 1 0 1 Endoplasmic reticulum 1 0.500315423404664 1 0.999369153190672 hm5C_site_24515 DeepMRMD:1;iRNA_m5C:0.999369153190672 24516 chr19 19655256 19655256 1 + G A HNSC 19655244 + 19655224 19655264 41 GACCTGCGCTTCGTGGACAGCGACGGCGAGCTGGCTCCACT GACCTGCGCTTCGTGGACAGCGACGGCGAGCTAGCTCCACT < 41bp 1 0.591812359194534 1 0.426062554121017 experiment 0.816375281610931 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19655244 chr19:19655256 synonymous SNV . 0 33 hm5C_associated_SNPs_23694 0 0 0 0 0 exosome 1 0.500231644126271 1 0.999536711747458 hm5C_site_24516 DeepMRMD:1;iRNA_m5C:0.999536711747458 24517 chr11 67047151 67047151 1 + G C HNSC 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGCTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC < 41bp 1 0.138342751673263 1 0.422125726938248 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047151 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_23695 0 0 1 0 2 chromatin 1 0.500231643921063 1 0.999536712157874 hm5C_site_24517 DeepMRMD:1;iRNA_m5C:0.999536712157874 24518 chr19 46198710 46198710 1 + C T HNSC 46198713 + 46198693 46198733 41 AGTTCCTGGAGGCCACGCTGCGGTCCCTGACAGCAGGTTGG AGTTCCTGGAGGCCACGTTGCGGTCCCTGACAGCAGGTTGG < 41bp 1 0.210182962849258 1 0.547072350978851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46198713 chr19:46198710 synonymous SNV . 0 18 hm5C_associated_SNPs_23696 0 0 1 0 1 chromatin 1 0.500231643983524 0.905855298042298 0.999536712032953 hm5C_site_24518 DeepMRMD:0.905855298042298;iRNA_m5C:0.999536712032953 24519 chr14 89069315 89069315 1 + C G HNSC 89069326 + 89069306 89069346 41 CTGCAGCCTCAAACAAGGGACTCAGAGGTCTCCTCCACCCA CTGCAGCCTGAAACAAGGGACTCAGAGGTCTCCTCCACCCA < 41bp 1 0.48757307449876 1 0.169774025678635 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89069326 chr14:89069315 stopgain 1.000 0 10 hm5C_associated_SNPs_23697 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24519 DeepMRMD:1;iRNA_m5C:0.999536712157815 24520 chr11 45832798 45832798 1 + C G HNSC 45832817 + 45832797 45832837 41 GCCTACACCTGGGTCAGGGGCTGGGAGATGAAGAAGACTCC GGCTACACCTGGGTCAGGGGCTGGGAGATGAAGAAGACTCC < 41bp 1 0.597438582487821 1 0.651301145553589 experiment 0.805122835024358 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC35C1 ENSG00000181830 CDS Human protein_coding chr11:45832817 chr11:45832798 nonsynonymous SNV 0.992 1 2 hm5C_associated_SNPs_23698 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.697397708892822 0.999536712157815 hm5C_site_24520 DeepMRMD:0.697397708892822;iRNA_m5C:0.999536712157815 24521 chr22 46712087 46712087 1 + G C HNSC 46712102 + 46712082 46712122 41 TTTCTGAGCTGGCAGCGGAGCAGCTCACGGCACCCCCCTCA TTTCTCAGCTGGCAGCGGAGCAGCTCACGGCACCCCCCTCA < 41bp 1 0.590828104993814 1 0.358223140239716 experiment 0.818343790012372 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46712102 chr22:46712087 nonsynonymous SNV 0.001 0 6 hm5C_associated_SNPs_23699 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_24521 DeepMRMD:1;iRNA_m5C:0.999536712157814 24522 chr1 220279318 220279318 1 + G T HNSC 220279315 + 220279295 220279335 41 TTACCTGCAAATCATGTGACCATGGCAAAAGGAACGGGATT TTACCTGCAAATCATGTGACCATTGCAAAAGGAACGGGATT < 41bp 1 0.0485292740003557 1 0.185761004686356 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IARS2 ENSG00000067704 CDS Human protein_coding chr1:220279315 chr1:220279318 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_23700 0 0 1 0 2 Ribosome 1 0.4999051421771 1 1 hm5C_site_24522 DeepMRMD:1;iRNA_m5C:1 24523 chr9 37486777 37486777 1 + C T HNSC 37486792 + 37486772 37486812 41 CCAACCCCAGGAAGAGGAATCAACGGATCCTGGTAAGTGAA CCAACTCCAGGAAGAGGAATCAACGGATCCTGGTAAGTGAA < 41bp 1 0.559878346421916 1 0.721273899078369 experiment 0.880243307156167 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37486792 chr9:37486777 nonsynonymous SNV 0.917 4 6 hm5C_associated_SNPs_23701 0 0 1 0 2 Ribosome 1 0.500231644030033 0.557452201843262 0.999536711939933 hm5C_site_24523 DeepMRMD:0.557452201843262;iRNA_m5C:0.999536711939933 24524 chr4 3101073 3101073 1 + G A HNSC 3101067 + 3101047 3101087 41 TTTCTGCTGTGCAGTGATGACGCAGAGTCAGATGTCAGGAT TTTCTGCTGTGCAGTGATGACGCAGAATCAGATGTCAGGAT < 41bp 1 0.378511858584568 1 0.362113922834396 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3101067 chr4:3101073 synonymous SNV . 0 27 hm5C_associated_SNPs_23702 0 0 1 0 2 Cytosol 1 0.500273486075475 1 0.99945302784905 hm5C_site_24524 DeepMRMD:1;iRNA_m5C:0.99945302784905 24525 chr11 73078705 73078705 1 + G T HNSC 73078714 + 73078694 73078734 41 AGGCCTAAAATGCTGGTTATCAGTGGAGGTGATGGCTATGA AGGCCTAAAATTCTGGTTATCAGTGGAGGTGATGGCTATGA < 41bp 1 0.347561733513361 1 0.47732862830162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73078714 chr11:73078705 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_23703 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24525 DeepMRMD:1;iRNA_m5C:0.999536712157815 24526 chr1 249210841 249210841 1 + T A HNSC 249210825 + 249210805 249210845 41 GTCATTGCTGGGAGAGGTATCCACTCAAAGGTGAAGTCTGC GTCATTGCTGGGAGAGGTATCCACTCAAAGGTGAAGACTGC < 41bp 1 0.20612735025541 1 0.562894940376282 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249210825 chr1:249210841 nonsynonymous SNV 0.038 0 37 hm5C_associated_SNPs_23704 0 0 0 0 1 Cytosol 1 0.500231643922945 0.874210119247436 0.99953671215411 hm5C_site_24526 DeepMRMD:0.874210119247436;iRNA_m5C:0.99953671215411 24527 chr19 10404974 10404974 1 + C T HNSC 10404989 + 10404969 10405009 41 CAAAACAGTCGTCGTGAGCGCGGAGTGTGAGCGAGGCCCAG CAAAATAGTCGTCGTGAGCGCGGAGTGTGAGCGAGGCCCAG < 41bp 1 0.55151394997824 1 0.766349911689758 experiment 0.89697210004352 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10404989 chr19:10404974 nonsynonymous SNV 0.974 1 6 hm5C_associated_SNPs_23705 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643914566 0.467300176620484 0.999536712170868 hm5C_site_24527 DeepMRMD:0.467300176620484;iRNA_m5C:0.999536712170868 24528 chr3 12616417 12616417 1 + G C HNSC 12616427 + 12616407 12616447 41 GAGGAGATTTGGGATTCTCTCCAATTGCAATCACACGTACT GAGGAGATTTCGGATTCTCTCCAATTGCAATCACACGTACT < 41bp 1 0.246314245105705 1 0.344011425971985 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12616427 chr3:12616417 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_23706 0 0 1 0 1 Cytosol 1 0.500231643922514 1 0.999536712154972 hm5C_site_24528 DeepMRMD:1;iRNA_m5C:0.999536712154972 24529 chr9 35389887 35389887 1 + C A HNSC 35389874 + 35389854 35389894 41 ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAACCTGGATT ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAAACTGGATT < 41bp 1 0.0584235889096742 1 0.163974344730377 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UNC13B ENSG00000198722 CDS Human protein_coding chr9:35389874 chr9:35389887 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_23707 0 0 1 0 2 Cytosol 1 0.500231476085022 1 0.999537047829955 hm5C_site_24529 DeepMRMD:1;iRNA_m5C:0.999537047829955 24530 chr11 117152363 117152363 1 + G A HNSC 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGGAACGGAGCCAAGCTAAGCAGCCT < 41bp 1 0.548346804285917 1 0.609443843364716 experiment 0.903306391428166 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152363 synonymous SNV . 0 33 hm5C_associated_SNPs_23708 0 0 1 0 2 chromatin 1 0.500231643921092 0.781112313270568 0.999536712157815 hm5C_site_24530 DeepMRMD:0.781112313270568;iRNA_m5C:0.999536712157815 24531 chr9 100127991 100127991 1 + G T HNSC 100128003 + 100127983 100128023 41 CTCTGGGAGAGCAGTGAGAACCTGCTGACAGTCGCAGAGGT CTCTGGGATAGCAGTGAGAACCTGCTGACAGTCGCAGAGGT < 41bp 1 0.138071530380686 1 0.354977458715439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100128003 chr9:100127991 nonsynonymous SNV 0.981 0 9 hm5C_associated_SNPs_23709 0 0 0 1 2 chromatin 1 0.500231109704504 1 0.999537780590992 hm5C_site_24531 DeepMRMD:1;iRNA_m5C:0.999537780590992 24532 chr2 179247226 179247226 1 + C T HNSC 179247214 + 179247194 179247234 41 TGAAGACAACACCAGTGTTGCAGACAATATTTCTCGGCAAA TGAAGACAACACCAGTGTTGCAGACAATATTTTTCGGCAAA < 41bp 1 0.10596168524808 1 0.154042541980743 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179247214 chr2:179247226 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_23710 0 0 1 0 2 Cytosol 1 0.500231714078161 1 0.999536571843678 hm5C_site_24532 DeepMRMD:1;iRNA_m5C:0.999536571843678 24533 chr2 167056284 167056284 1 + C T HNSC 167056285 - 167056265 167056305 41 CCAGGATTGGCCGAATCCTACGTCTAGTCAAAGGAGCAAAG CCAGGATTGGCCGAATCCTACATCTAGTCAAAGGAGCAAAG < 41bp 1 0.143211808756236 1 0.0410421192646027 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167056285 chr2:167056284 nonsynonymous SNV 0.922 5 22 hm5C_associated_SNPs_23711 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24533 DeepMRMD:1;iRNA_m5C:0.999536712157815 24534 chr7 150773105 150773105 1 + G A HNSC 150773103 + 150773083 150773123 41 CTGTCTCCGCCCCCCAGGTCCGGACCCTCCGTATGCACCTG CTGTCTCCGCCCCCCAGGTCCGAACCCTCCGTATGCACCTG < 41bp 1 0.179973939365223 1 0.102335602045059 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773103 chr7:150773105 synonymous SNV . 0 23 hm5C_associated_SNPs_23712 0 0 1 0 1 Ribosome 1 0.500231699546718 1 0.999536600906564 hm5C_site_24534 DeepMRMD:1;iRNA_m5C:0.999536600906564 24535 chr4 1941403 1941403 1 + A G HNSC 1941384 + 1941364 1941404 41 CCAAAATTATTTTACAGCAACGAAAAATCTGTCTGATGCAT CCAAAATTATTTTACAGCAACGAAAAATCTGTCTGATGCGT < 41bp 1 0.233946921917771 1 0.412023961544037 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD2 ENSG00000109685 CDS Human protein_coding chr4:1941384 chr4:1941403 nonsynonymous SNV . 0 40 hm5C_associated_SNPs_23713 0 0 1 0 1 Nucleus 1 0.500231643076658 1 0.999536713846683 hm5C_site_24535 DeepMRMD:1;iRNA_m5C:0.999536713846683 24536 chr14 71444274 71444274 1 + C G HNSC 71444269 + 71444249 71444289 41 AGCTATAAAAGTGAGCAGACCAGCTCAACTCACATAGAGAG AGCTATAAAAGTGAGCAGACCAGCTGAACTCACATAGAGAG < 41bp 1 0.258614218252384 1 0.208748757839203 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71444269 chr14:71444274 stopgain 0.852 1 26 hm5C_associated_SNPs_23714 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921963 1 0.999536712156074 hm5C_site_24536 DeepMRMD:1;iRNA_m5C:0.999536712156074 24537 chr5 176709508 176709508 1 + G T HNSC 176709496 + 176709476 176709516 41 TGAATGAGTATGTGGGTGAGCTTATAGATGAAGAAGAATGC TGAATGAGTATGTGGGTGAGCTTATAGATGAATAAGAATGC < 41bp 1 0.0358735243980727 1 0.0368396937847137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176709496 chr5:176709508 stopgain 1.000 1 33 hm5C_associated_SNPs_23715 0 0 1 0 1 Nucleus 1 0.50023164385391 1 0.99953671229218 hm5C_site_24537 DeepMRMD:1;iRNA_m5C:0.99953671229218 24538 chrX 70514351 70514351 1 + G A HNSC 70514364 + 70514344 70514384 41 GACAGATGCAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT GACAGATACAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT < 41bp 1 0.0863675451954383 1 0.0980836749076843 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70514364 chrX:70514351 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_23716 0 0 1 0 1 Nucleus 1 0.500231644102088 1 0.999536711795824 hm5C_site_24538 DeepMRMD:1;iRNA_m5C:0.999536711795824 24539 chr17 7160292 7160292 1 + G T HNSC 7160303 + 7160283 7160323 41 ACCCTGGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCT ACCCTGGGCTGTACCATGGGCCAGGCCTCGGCCCACATCCT < 41bp 1 0.434857710798564 1 0.129424393177032 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160303 chr17:7160292 nonsynonymous SNV 0.043 3 10 hm5C_associated_SNPs_23717 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24539 DeepMRMD:1;iRNA_m5C:0.999536712157815 24540 chr17 7160292 7160292 1 + G T HNSC 7160304 + 7160284 7160324 41 CCCTGGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCTG CCCTGGGCTGTACCATGGGCCAGGCCTCGGCCCACATCCTG < 41bp 1 0.667140184603239 1 0.56186830997467 experiment 0.665719630793522 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160304 chr17:7160292 nonsynonymous SNV 0.043 3 9 hm5C_associated_SNPs_23718 0 0 1 0 1 Cytosol 1 0.500231643920348 0.87626338005066 0.999536712159304 hm5C_site_24540 DeepMRMD:0.87626338005066;iRNA_m5C:0.999536712159304 24541 chrX 129149413 129149413 1 + C T HNSC 129149429 + 129149409 129149449 41 GCAACCACGGCCTGGGGGCTCCTTCGTTCCAGAGCAGGACC GCAATCACGGCCTGGGGGCTCCTTCGTTCCAGAGCAGGACC < 41bp 1 0.0259432402063829 1 0.132691204547882 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129149429 chrX:129149413 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_23719 0 0 1 0 0 Cytosol 1 0.500231643768723 1 0.999536712462553 hm5C_site_24541 DeepMRMD:1;iRNA_m5C:0.999536712462553 24542 chr11 33094117 33094117 1 + G A HNSC 33094103 + 33094083 33094123 41 CAGTCCCTGGGGGACTCAGTCCAGTTCAGAGAGAGCTGGAG CAGTCCCTGGGGGACTCAGTCCAGTTCAGAGAGAACTGGAG < 41bp 1 0.333889639954974 1 0.555554628372192 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33094103 chr11:33094117 synonymous SNV . 0 35 hm5C_associated_SNPs_23720 0 0 0 0 2 Ribosome 1 0.500231648166861 0.888890743255616 0.999536703666277 hm5C_site_24542 DeepMRMD:0.888890743255616;iRNA_m5C:0.999536703666277 24543 chr17 30692368 30692368 1 + A T HNSC 30692372 + 30692352 30692392 41 TGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT TGCCCCCACCTGTTCCTCGTCCTGGAATTCCTCCAATGACT < 41bp 1 0.270611629895325 1 0.301835119724274 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692372 chr17:30692368 synonymous SNV . 0 17 hm5C_associated_SNPs_23722 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24543 DeepMRMD:1;iRNA_m5C:0.999536712157815 24544 chr17 30692368 30692368 1 + A T HNSC 30692381 + 30692361 30692401 41 CTGTTCCACGTCCTGGAATTCCTCCAATGACTCAAGCACAG CTGTTCCTCGTCCTGGAATTCCTCCAATGACTCAAGCACAG < 41bp 1 0.133093846185874 1 0.447373569011688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692381 chr17:30692368 synonymous SNV . 0 8 hm5C_associated_SNPs_23723 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_24544 DeepMRMD:1;iRNA_m5C:0.999536712157812 24545 chr15 44085881 44085881 1 + C A HNSC 44085898 + 44085878 44085918 41 CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGA CTCACAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGA < 41bp 1 0.282237792475675 1 0.0457623600959778 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085898 chr15:44085881 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_23724 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_24545 DeepMRMD:1;iRNA_m5C:0.999536712157815 24546 chr6 163984541 163984541 1 + C T HNSC 163984557 + 163984537 163984577 41 CCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT CCTGTGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT < 41bp 1 0.391937227859411 1 0.167358607053757 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QKI ENSG00000112531 CDS Human protein_coding chr6:163984557 chr6:163984541 nonsynonymous SNV 0.999 2 5 hm5C_associated_SNPs_23726 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24546 DeepMRMD:1;iRNA_m5C:0.999536712157815 24547 chr6 26022048 26022048 1 + T C HNSC 26022047 + 26022027 26022067 41 CGTGGCGGTGTGAAGCGGATCTCTGGTCTGATCTACGAGGA CGTGGCGGTGTGAAGCGGATCCCTGGTCTGATCTACGAGGA < 41bp 1 0.478931114380659 1 0.188713371753693 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H4A ENSG00000196176 CDS Human other chr6:26022047 chr6:26022048 nonsynonymous SNV 0.921 0 22 hm5C_associated_SNPs_23730 0 0 1 0 0 exosome 1 0.500231643921109 1 0.999536712157781 hm5C_site_24547 DeepMRMD:1;iRNA_m5C:0.999536712157781 24548 chr2 162091951 162091951 1 + A G HNSC 162091953 + 162091933 162091973 41 AGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCATTA AGTATGTGAATTCTGTCAGGCAGTTTTCCCACCATCCATTA < 41bp 1 0.442820826938938 1 0.0297448337078094 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANK ENSG00000136560 CDS Human protein_coding chr2:162091953 chr2:162091951 synonymous SNV . 0 19 hm5C_associated_SNPs_23731 0 0 1 0 1 Cytosol 1 0.500231643921029 1 0.999536712157942 hm5C_site_24548 DeepMRMD:1;iRNA_m5C:0.999536712157942 24549 chrX 70787355 70787355 1 + G A HNSC 70787359 + 70787339 70787379 41 CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGTGTACTC CCCTATTTTAGATTCTAAAGCGTGTTCCCAATAGTGTACTC < 41bp 1 0.251349263637792 1 0.078940361738205 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70787359 chrX:70787355 synonymous SNV . 0 17 hm5C_associated_SNPs_23732 0 0 1 0 1 Nucleus 1 0.500231644090831 1 0.999536711818338 hm5C_site_24549 DeepMRMD:1;iRNA_m5C:0.999536711818338 24550 chr1 12030858 12030858 1 + C T HNSC 12030850 + 12030830 12030870 41 TTGCGCCCATGACGGAGAAGCTCTACCCCGGCTACTACACC TTGCGCCCATGACGGAGAAGCTCTACCCTGGCTACTACACC < 41bp 1 0.382021099804621 1 0.249313980340958 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12030850 chr1:12030858 synonymous SNV . 0 29 hm5C_associated_SNPs_23733 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24550 DeepMRMD:1;iRNA_m5C:0.999536712157815 24551 chr6 33380521 33380521 1 + G C HNSC 33380523 + 33380503 33380543 41 TTGTGTCTGTCGCTCTGAGACTGTGGTCCCTGGGAACCGGC TTGTGTCTGTCGCTCTGACACTGTGGTCCCTGGGAACCGGC < 41bp 1 0.474828755790475 1 0.0696415305137634 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380523 chr6:33380521 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_23734 0 0 1 0 2 Cytosol 1 0.500231684011601 1 0.999536631976798 hm5C_site_24551 DeepMRMD:1;iRNA_m5C:0.999536631976798 24552 chr12 53849719 53849719 1 + C T HNSC 53849736 + 53849716 53849756 41 TATCACTTTGGCTGGACCCACTAATGCCATCTTCAAAGCCT TATTACTTTGGCTGGACCCACTAATGCCATCTTCAAAGCCT < 41bp 1 0.315226622259773 1 0.104443222284317 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53849736 chr12:53849719 synonymous SNV . 0 4 hm5C_associated_SNPs_23735 0 0 1 0 1 Cytosol 1 0.500231332839641 1 0.999537334320718 hm5C_site_24552 DeepMRMD:1;iRNA_m5C:0.999537334320718 24553 chr11 9459832 9459832 1 + G A HNSC 9459830 + 9459810 9459850 41 AGCTGAAGATGATGATGAAACCGGTAAGGGATTTTCAATGG AGCTGAAGATGATGATGAAACCAGTAAGGGATTTTCAATGG < 41bp 1 0.442182284424396 1 0.139099270105362 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9459830 chr11:9459832 nonsynonymous SNV 0.717 1 23 hm5C_associated_SNPs_23736 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_24553 DeepMRMD:1;iRNA_m5C:0.999536712157816 24554 chr11 9459832 9459832 1 + G A HNSC 9459831 + 9459811 9459851 41 GCTGAAGATGATGATGAAACCGGTAAGGGATTTTCAATGGA GCTGAAGATGATGATGAAACCAGTAAGGGATTTTCAATGGA < 41bp 1 0.683142427944159 1 0.336188673973083 experiment 0.633715144111682 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9459831 chr11:9459832 nonsynonymous SNV 0.717 1 22 hm5C_associated_SNPs_23737 0 0 1 0 1 Cytosol 1 0.500231643990017 1 0.999536712019965 hm5C_site_24554 DeepMRMD:1;iRNA_m5C:0.999536712019965 24555 chr7 98609784 98609784 1 + G T HNSC 98609794 + 98609774 98609814 41 TCTCTCGGCCGCCGGGCAGCCAGAGAACATGGACAGCCAGC TCTCTCGGCCTCCGGGCAGCCAGAGAACATGGACAGCCAGC < 41bp 1 0.304777064839248 1 0.889688372612 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98609794 chr7:98609784 nonsynonymous SNV 0.022 1 11 hm5C_associated_SNPs_23739 0 0 1 0 1 Nucleus 1 0.500231643955605 0.220623254776 0.99953671208879 hm5C_site_24555 DeepMRMD:0.220623254776;iRNA_m5C:0.99953671208879 24556 chr16 30960744 30960744 1 + C G HNSC 30960753 + 30960733 30960773 41 CAGTCAGCACTCGCTGCGGGCGCTCAGCTGGCGCCGCCTCT CAGTCAGCACTGGCTGCGGGCGCTCAGCTGGCGCCGCCTCT < 41bp 1 0.158272581162563 1 0.0651813149452209 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30960753 chr16:30960744 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_23740 0 0 1 0 1 chromatin 1 0.500231643921091 1 0.999536712157817 hm5C_site_24556 DeepMRMD:1;iRNA_m5C:0.999536712157817 24557 chr2 204053284 204053284 1 + C G HNSC 204053265 + 204053245 204053285 41 TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTCA TGGCTATAAACAGAGGGGACCAGCTGCAGTAGAGGCACTGA < 41bp 1 0.140419946274898 1 0.567487001419067 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204053265 chr2:204053284 synonymous SNV . 0 40 hm5C_associated_SNPs_23742 0 0 0 0 2 chromatin 1 0.500231643921092 0.865025997161866 0.999536712157815 hm5C_site_24557 DeepMRMD:0.865025997161866;iRNA_m5C:0.999536712157815 24558 chr1 33237324 33237324 1 + C T HNSC 33237305 + 33237285 33237325 41 TCCTCCAGCTCCGCCAGCCCCAGCTCCTGCTAGTTCCGCCC TCCTCCAGCTCCGCCAGCCCCAGCTCCTGCTAGTTCCGCTC < 41bp 1 0.382508091393076 1 0.663178741931915 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33237305 chr1:33237324 synonymous SNV . 0 40 hm5C_associated_SNPs_23743 0 0 1 0 0 Ribosome 1 0.500231643921092 0.67364251613617 0.999536712157815 hm5C_site_24558 DeepMRMD:0.67364251613617;iRNA_m5C:0.999536712157815 24559 chr7 150933597 150933597 1 + G T HNSC 150933611 + 150933591 150933631 41 CCGAAGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGC CCGAAGTTACCCTCATGTACCGGCTCCACAAACGCTTCAGC < 41bp 1 0.325457400831817 1 0.541434347629547 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933611 chr7:150933597 nonsynonymous SNV 0.990 1 7 hm5C_associated_SNPs_23744 0 0 1 0 1 Nucleus 1 0.500231643999116 0.917131304740906 0.999536712001768 hm5C_site_24559 DeepMRMD:0.917131304740906;iRNA_m5C:0.999536712001768 24560 chr7 150933597 150933597 1 + G T HNSC 150933614 + 150933594 150933634 41 AAGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCT AAGTTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCT < 41bp 1 0.388432688849233 1 0.923477649688721 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933614 chr7:150933597 nonsynonymous SNV 0.990 1 4 hm5C_associated_SNPs_23745 0 0 1 0 1 Nucleus 1 0.500231643921092 0.153044700622558 0.999536712157815 hm5C_site_24560 DeepMRMD:0.153044700622558;iRNA_m5C:0.999536712157815 24561 chr7 150933597 150933597 1 + G T HNSC 150933616 + 150933596 150933636 41 GGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCTCT GTTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCTCT < 41bp 1 0.262814593461245 1 0.16693851351738 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933616 chr7:150933597 nonsynonymous SNV 0.990 1 2 hm5C_associated_SNPs_23746 0 0 1 0 1 Nucleus 1 0.500231643915111 1 0.999536712169778 hm5C_site_24561 DeepMRMD:1;iRNA_m5C:0.999536712169778 24562 chr2 224824372 224824372 1 + G A HNSC 224824387 + 224824367 224824407 41 AAAGTGAGGAGGCCAAACGCCAACAACTTGGGATAGAGAAA AAAGTAAGGAGGCCAAACGCCAACAACTTGGGATAGAGAAA < 41bp 1 0.571846093746584 1 0.419499188661575 experiment 0.856307812506832 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824387 chr2:224824372 nonsynonymous SNV 0.979 4 6 hm5C_associated_SNPs_23747 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24562 DeepMRMD:1;iRNA_m5C:0.999536712157815 24563 chr7 135328051 135328051 1 + A T HNSC 135328068 + 135328048 135328088 41 GACAGAGTGTCAGCAAGCTACAAAATGTAGAGCAGCTTCCC GACTGAGTGTCAGCAAGCTACAAAATGTAGAGCAGCTTCCC < 41bp 1 0.468528112051728 1 0.188907444477081 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135328068 chr7:135328051 nonsynonymous SNV 0.979 1 4 hm5C_associated_SNPs_23748 0 0 1 0 1 Cytosol 1 0.500233635341765 1 0.99953272931647 hm5C_site_24563 DeepMRMD:1;iRNA_m5C:0.99953272931647 24564 chr9 110073972 110073972 1 + T C HNSC 110073977 + 110073957 110073997 41 TTGTAGTACATCGGGTGATTCTTCTCGGTCAAACCTTTTTG TTGTAGTACATCGGGCGATTCTTCTCGGTCAAACCTTTTTG < 41bp 1 0.153295475594236 1 0.0990540087223053 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110073977 chr9:110073972 synonymous SNV . 0 16 hm5C_associated_SNPs_23749 0 0 1 0 2 Ribosome 1 0.500231649157147 1 0.999536701685706 hm5C_site_24564 DeepMRMD:1;iRNA_m5C:0.999536701685706 24565 chr12 113388618 113388618 1 + G A HNSC 113388604 + 113388584 113388624 41 GGACCAGGGGCCCCGCCGCGCAGAGATCCTTGATGAGATGC GGACCAGGGGCCCCGCCGCGCAGAGATCCTTGATAAGATGC < 41bp 1 0.514030243097189 1 0.584738254547119 experiment 0.971939513805623 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113388604 chr12:113388618 nonsynonymous SNV 0.331 0 35 hm5C_associated_SNPs_23751 0 0 0 0 0 Nucleus 1 0.500231643849695 0.830523490905762 0.99953671230061 hm5C_site_24565 DeepMRMD:0.830523490905762;iRNA_m5C:0.99953671230061 24566 chr6 30547713 30547713 1 + A G HNSC 30547729 + 30547709 30547749 41 CCGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG CCGTGTCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG < 41bp 1 0.0692655501069853 1 0.0719242990016937 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547729 chr6:30547713 synonymous SNV . 0 5 hm5C_associated_SNPs_23752 0 0 1 0 2 Endoplasmic reticulum 1 0.500231650020119 1 0.999536699959762 hm5C_site_24566 DeepMRMD:1;iRNA_m5C:0.999536699959762 24567 chr5 86670020 86670020 1 + T A HNSC 86670013 + 86669993 86670033 41 TTTTACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT TTTTACATATTGAAGAAGCCCATAAACACCCAGTAAAACAT < 41bp 1 0.204349336065802 1 0.206301242113113 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86670013 chr5:86670020 nonsynonymous SNV 0.998 5 28 hm5C_associated_SNPs_23753 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24567 DeepMRMD:1;iRNA_m5C:0.999536712157815 24568 chr17 73489130 73489130 1 + G T HNSC 73489149 + 73489129 73489169 41 CGGCGGCCTCCCCTCAGCCACATGATCAGCCTCTTCATTAA CTGCGGCCTCCCCTCAGCCACATGATCAGCCTCTTCATTAA < 41bp 1 0.489856749378713 1 0.109845280647278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73489149 chr17:73489130 nonsynonymous SNV 0.990 3 2 hm5C_associated_SNPs_23754 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24568 DeepMRMD:1;iRNA_m5C:0.999536712157815 24569 chr17 7983186 7983186 1 + C G HNSC 7983202 + 7983182 7983222 41 GGATCAGGCCGGGGTTGACGCCGTTGAGGTACTGGTACCCA GGATGAGGCCGGGGTTGACGCCGTTGAGGTACTGGTACCCA < 41bp 1 0.439066543262344 1 0.325142800807953 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7983202 chr17:7983186 synonymous SNV . 0 5 hm5C_associated_SNPs_23755 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_24569 DeepMRMD:1;iRNA_m5C:0.999536712157816 24570 chr1 3342265 3342265 1 + G A HNSC 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAAACCAA < 41bp 1 0.308748109745866 1 0.318960905075073 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342265 synonymous SNV . 0 36 hm5C_associated_SNPs_23756 0 0 0 0 1 Nucleus 1 0.500231656168804 1 0.999536687662392 hm5C_site_24570 DeepMRMD:1;iRNA_m5C:0.999536687662392 24571 chr2 99156097 99156097 1 + C A HNSC 99156084 + 99156064 99156104 41 GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGCAGT GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCACGGCAGT < 41bp 1 0.297370427870052 1 0.810474693775177 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99156084 chr2:99156097 synonymous SNV . 0 34 hm5C_associated_SNPs_23757 0 0 1 0 1 Ribosome 1 0.500231641956813 0.379050612449646 0.999536716086374 hm5C_site_24571 DeepMRMD:0.379050612449646;iRNA_m5C:0.999536716086374 24572 chr10 129866487 129866487 1 + A T HNSC 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGATGTTCC < 41bp 1 0.0916173866966399 1 0.0652447044849396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866487 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_23758 0 0 0 2 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24572 DeepMRMD:1;iRNA_m5C:0.999536712157815 24573 chr17 48562221 48562221 1 + G A HNSC 48562204 + 48562184 48562224 41 TGGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACA TGGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATAACA < 41bp 1 0.131814536653969 1 0.239024102687836 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562204 chr17:48562221 synonymous SNV . 0 38 hm5C_associated_SNPs_23759 0 0 0 1 0 Ribosome 1 0.500231642339596 1 0.999536715320808 hm5C_site_24573 DeepMRMD:1;iRNA_m5C:0.999536715320808 24574 chr17 48562221 48562221 1 + G A HNSC 48562205 + 48562185 48562225 41 GGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACAA GGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATAACAA < 41bp 1 0.148086942968264 1 0.397725790739059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562205 chr17:48562221 synonymous SNV . 0 37 hm5C_associated_SNPs_23760 0 0 0 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24574 DeepMRMD:1;iRNA_m5C:0.999536712157815 24575 chr20 60881334 60881334 1 + G T HNSC 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA CAACCCCCCGATGCCTGGGGCGCTGTGGGCCAGCGGAAGCA < 41bp 1 0.216726070605381 1 0.324277430772781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881334 nonsynonymous SNV 0.062 4 26 hm5C_associated_SNPs_23761 0 0 1 0 2 Ribosome 1 0.500231643920328 1 0.999536712159344 hm5C_site_24575 DeepMRMD:1;iRNA_m5C:0.999536712159344 24576 chr20 60881334 60881334 1 + G T HNSC 60881331 + 60881311 60881351 41 ACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCAGC ACCCCCCGATGCCTGGGGCGCTGTGGGCCAGCGGAAGCAGC < 41bp 1 0.463326396668795 1 0.145142734050751 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881331 chr20:60881334 nonsynonymous SNV 0.062 4 24 hm5C_associated_SNPs_23762 0 0 1 0 2 Ribosome 1 0.500231643917717 1 0.999536712164566 hm5C_site_24576 DeepMRMD:1;iRNA_m5C:0.999536712164566 24577 chr6 144875972 144875972 1 + C G HNSC 144875991 + 144875971 144876011 41 TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA TGTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA < 41bp 1 0.225156506534659 1 0.344850599765778 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144875991 chr6:144875972 synonymous SNV . 0 2 hm5C_associated_SNPs_23763 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_24577 DeepMRMD:1;iRNA_m5C:0.999536712157815 24578 chr9 100079383 100079383 1 + C G HNSC 100079373 + 100079353 100079393 41 AACTATGCCCTGCTGGGCAACCGGAAGGCTCTCGCCCAGCT AACTATGCCCTGCTGGGCAACCGGAAGGCTGTCGCCCAGCT < 41bp 1 0.656613038600738 1 0.657958030700684 experiment 0.686773922798524 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100079373 chr9:100079383 nonsynonymous SNV 0.956 0 31 hm5C_associated_SNPs_23764 0 0 1 0 1 chromatin 1 0.500231643898235 0.684083938598632 0.99953671220353 hm5C_site_24578 DeepMRMD:0.684083938598632;iRNA_m5C:0.99953671220353 24579 chr17 42636025 42636025 1 + G A HNSC 42636043 + 42636023 42636063 41 AAGAAGGAGGGCTGCACCATCCTCTTCATGATGCTCTACTT AAAAAGGAGGGCTGCACCATCCTCTTCATGATGCTCTACTT < 41bp 1 0.142933097088695 1 0.101930171251297 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZD2 ENSG00000180340 CDS Human protein_coding chr17:42636043 chr17:42636025 synonymous SNV . 0 3 hm5C_associated_SNPs_23765 0 0 0 0 0 exosome 1 0.500231643915455 1 0.99953671216909 hm5C_site_24579 DeepMRMD:1;iRNA_m5C:0.99953671216909 24580 chr17 42635642 42635642 1 + G C HNSC 42635648 + 42635628 42635668 41 GCTACGCCACGCTGGAGCACCCCTTCCACTGCCCGCGCGTC GCTACGCCACGCTGCAGCACCCCTTCCACTGCCCGCGCGTC < 41bp 1 0.119039769327242 1 0.0424684882164001 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZD2 ENSG00000180340 CDS Human protein_coding chr17:42635648 chr17:42635642 nonsynonymous SNV 0.997 0 15 hm5C_associated_SNPs_23766 0 0 0 0 0 exosome 1 0.500231647610961 1 0.999536704778077 hm5C_site_24580 DeepMRMD:1;iRNA_m5C:0.999536704778077 24581 chr10 51584772 51584772 1 + C G HNSC 51584778 + 51584758 51584798 41 AAAAGGTTGGAGATCAAGAGCTTCCTGATCAAGATGAGATG AAAAGGTTGGAGATGAAGAGCTTCCTGATCAAGATGAGATG < 41bp 1 0.0984955399642646 1 0.0541867911815643 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCOA4 ENSG00000138293 CDS Human other chr10:51584778 chr10:51584772 nonsynonymous SNV . 0 15 hm5C_associated_SNPs_23767 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24581 DeepMRMD:1;iRNA_m5C:0.999536712157815 24582 chr5 72187641 72187641 1 + A G HNSC 72187646 + 72187626 72187666 41 ATTGTAAATAGGAATATATTCAGATGCTAATGCCTCCACTG ATTGTAAATAGGAATGTATTCAGATGCTAATGCCTCCACTG < 41bp 1 0.613616301347868 1 0.86452978849411 experiment 0.772767397304263 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187646 chr5:72187641 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_23768 0 0 1 0 2 Cytosol 1 0.500231657887641 0.27094042301178 0.999536684224718 hm5C_site_24582 DeepMRMD:0.27094042301178;iRNA_m5C:0.999536684224718 24583 chr5 72187641 72187641 1 + A G HNSC 72187652 + 72187632 72187672 41 AATAGGAATATATTCAGATGCTAATGCCTCCACTGATCCAG AATAGGAATGTATTCAGATGCTAATGCCTCCACTGATCCAG < 41bp 1 0.26745839516255 1 0.0864552855491638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187652 chr5:72187641 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_23769 0 0 1 0 2 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_24583 DeepMRMD:1;iRNA_m5C:0.99953671215782 24584 chr5 72187641 72187641 1 + A G HNSC 72187658 + 72187638 72187678 41 AATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGG AATGTATTCAGATGCTAATGCCTCCACTGATCCAGAAATGG < 41bp 1 0.0170780230481543 1 0.235787063837051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187658 chr5:72187641 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23770 0 0 1 0 2 Cytosol 1 0.500231643920979 1 0.999536712158043 hm5C_site_24584 DeepMRMD:1;iRNA_m5C:0.999536712158043 24585 chr5 72187641 72187641 1 + A G HNSC 72187659 + 72187639 72187679 41 ATATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGA ATGTATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGA < 41bp 1 0.436256760157826 1 0.890514016151428 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187659 chr5:72187641 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_23771 0 0 1 0 2 Cytosol 1 0.500231646428163 0.218971967697144 0.999536707143673 hm5C_site_24585 DeepMRMD:0.218971967697144;iRNA_m5C:0.999536707143673 24586 chr5 72187641 72187641 1 + A G HNSC 72187661 + 72187641 72187681 41 ATATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAAC GTATTCAGATGCTAATGCCTCCACTGATCCAGAAATGGAAC < 41bp 1 0.0883010635645194 1 0.0791474878787994 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72187661 chr5:72187641 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_23772 0 0 1 0 2 Cytosol 1 0.500231667903639 1 0.999536664192721 hm5C_site_24586 DeepMRMD:1;iRNA_m5C:0.999536664192721 24587 chr22 38209492 38209492 1 + C T HNSC 38209473 + 38209453 38209493 41 TCACTGCCTCCCTCCAGGCCCTGCTGACCCCAGAGGACGCA TCACTGCCTCCCTCCAGGCCCTGCTGACCCCAGAGGACGTA < 41bp 1 0.378983499707573 1 0.0408859550952911 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GCAT ENSG00000100116 CDS Human protein_coding chr22:38209473 chr22:38209492 nonsynonymous SNV 0.344 5 40 hm5C_associated_SNPs_23773 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24587 DeepMRMD:1;iRNA_m5C:0.999536712157815 24588 chr7 150737355 150737355 1 + G T HNSC 150737364 + 150737344 150737384 41 TTTTCTGACAGGTCCATGGCCAACCTCTCTGTCCTGTTTGG TTTTCTGACAGTTCCATGGCCAACCTCTCTGTCCTGTTTGG < 41bp 1 0.124850493265311 1 0.0283587574958801 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737364 chr7:150737355 nonsynonymous SNV 0.965 2 12 hm5C_associated_SNPs_23774 0 0 1 0 2 Ribosome 1 0.500231643921043 1 0.999536712157914 hm5C_site_24588 DeepMRMD:1;iRNA_m5C:0.999536712157914 24589 chr1 109342874 109342874 1 + A G HNSC 109342888 + 109342868 109342908 41 AAAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA AAAAGAGTGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA < 41bp 1 0.463775317862798 1 0.0179977118968964 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342888 chr1:109342874 synonymous SNV . 0 7 hm5C_associated_SNPs_23775 0 0 0 0 2 Nucleus 1 0.500231643921095 1 0.999536712157811 hm5C_site_24589 DeepMRMD:1;iRNA_m5C:0.999536712157811 24590 chr1 109342874 109342874 1 + A G HNSC 109342889 + 109342869 109342909 41 AAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA AAAGAGTGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA < 41bp 1 0.394318874480954 1 0.0463108122348785 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342889 chr1:109342874 synonymous SNV . 0 6 hm5C_associated_SNPs_23776 0 0 0 0 2 Nucleus 1 0.500231642099587 1 0.999536715800826 hm5C_site_24590 DeepMRMD:1;iRNA_m5C:0.999536715800826 24591 chr14 68191267 68191267 1 + C T HNSC 68191265 + 68191245 68191285 41 GTGGTGATCACTGGCGCCAACACGGGCATTGGCAAGGAGAC GTGGTGATCACTGGCGCCAACATGGGCATTGGCAAGGAGAC < 41bp 1 0.57155225442971 1 0.37426769733429 experiment 0.85689549114058 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191265 chr14:68191267 nonsynonymous SNV 0.987 5 23 hm5C_associated_SNPs_23778 1 0 0 0 2 exosome 1 0.500231643920833 1 0.999536712158333 hm5C_site_24591 DeepMRMD:1;iRNA_m5C:0.999536712158333 Leber congenital amaurosis 13 Leber congenital amaurosis 13 24592 chr1 36755247 36755247 1 + G T HNSC 36755232 + 36755212 36755252 41 AGAAAAGCTCATCACCTCCCCCAAGAAAGACCTCTGAGAGC AGAAAAGCTCATCACCTCCCCCAAGAAAGACCTCTTAGAGC < 41bp 1 0.178558202962095 1 0.740719258785248 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36755232 chr1:36755247 stopgain 1.000 1 36 hm5C_associated_SNPs_23779 0 0 1 0 0 Nucleus 1 0.500231643920878 0.518561482429504 0.999536712158243 hm5C_site_24592 DeepMRMD:0.518561482429504;iRNA_m5C:0.999536712158243 24593 chr22 51160628 51160628 1 + C G HNSC 51160617 + 51160597 51160637 41 CAGCACCACGCCGCCTCTGCCGGGCTGGCCTCTGCCGCCGG CAGCACCACGCCGCCTCTGCCGGGCTGGCCTGTGCCGCCGG < 41bp 1 0.666225762739372 1 0.920046448707581 experiment 0.667548474521257 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51160617 chr22:51160628 nonsynonymous SNV . 0 32 hm5C_associated_SNPs_23781 0 0 0 0 0 cytosol 1 0.500231618897333 0.159907102584838 0.999536762205333 hm5C_site_24593 DeepMRMD:0.159907102584838;iRNA_m5C:0.999536762205333 24594 chr17 30321584 30321584 1 + A G HNSC 30321586 + 30321566 30321606 41 TTACATTTTTGTTGCAGTATCATCCAAAAGGTGCTAGGATA TTACATTTTTGTTGCAGTGTCATCCAAAAGGTGCTAGGATA < 41bp 1 0.0775833687547708 1 0.178715616464615 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30321586 chr17:30321584 nonsynonymous SNV 0.996 1 19 hm5C_associated_SNPs_23782 0 0 1 0 1 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_24594 DeepMRMD:1;iRNA_m5C:0.99953671215781 24595 chr19 42373230 42373230 1 + G A HNSC 42373215 + 42373195 42373235 41 CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCGGG CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCACCGGG < 41bp 1 0.259732072217287 1 0.197692215442657 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373215 chr19:42373230 nonsynonymous SNV 0.966 2 36 hm5C_associated_SNPs_23783 0 0 1 0 1 Cytosol 1 0.500231643919473 1 0.999536712161055 hm5C_site_24595 DeepMRMD:1;iRNA_m5C:0.999536712161055 24596 chr19 42373230 42373230 1 + G A HNSC 42373228 + 42373208 42373248 41 CGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCT CGAGGCTCCAAGAGTGTGGCCCACCGGGTCCTCCAAGCCCT < 41bp 1 0.17498399727765 1 0.0383783578872681 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373228 chr19:42373230 nonsynonymous SNV 0.966 2 23 hm5C_associated_SNPs_23784 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24596 DeepMRMD:1;iRNA_m5C:0.999536712157815 24597 chr19 42373230 42373230 1 + G A HNSC 42373231 + 42373211 42373251 41 GGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGA GGCTCCAAGAGTGTGGCCCACCGGGTCCTCCAAGCCCTGGA < 41bp 1 0.656725004053571 1 0.644806385040283 experiment 0.686549991892857 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373231 chr19:42373230 nonsynonymous SNV 0.966 2 20 hm5C_associated_SNPs_23785 0 0 1 0 1 Cytosol 1 0.500231643921092 0.710387229919434 0.999536712157815 hm5C_site_24597 DeepMRMD:0.710387229919434;iRNA_m5C:0.999536712157815 24598 chr19 42373230 42373230 1 + G A HNSC 42373237 + 42373217 42373257 41 AAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCT AAGAGTGTGGCCCACCGGGTCCTCCAAGCCCTGGAGGGGCT < 41bp 1 0.0428760385724925 1 0.0668787360191345 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373237 chr19:42373230 nonsynonymous SNV 0.966 2 14 hm5C_associated_SNPs_23786 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24598 DeepMRMD:1;iRNA_m5C:0.999536712157815 24599 chr18 29116334 29116334 1 + C G HNSC 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTGTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA < 41bp 1 0.140548337161618 1 0.100990951061249 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116334 nonsynonymous SNV 0.581 4 5 hm5C_associated_SNPs_23787 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920755 1 0.99953671215849 hm5C_site_24599 DeepMRMD:1;iRNA_m5C:0.99953671215849 24600 chr18 29116334 29116334 1 + C G HNSC 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA GTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA < 41bp 1 0.474164338837356 1 0.132568359375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116334 nonsynonymous SNV 0.581 4 1 hm5C_associated_SNPs_23788 0 0 1 0 1 Endoplasmic reticulum 1 0.500235641004717 1 0.999528717990566 hm5C_site_24600 DeepMRMD:1;iRNA_m5C:0.999528717990566 24601 chr17 38512358 38512358 1 + G A HNSC 38512361 + 38512341 38512381 41 GAGGGCCTGGACACTCTGAGCGGACAGCCGGGGGGTGGGGG GAGGGCCTGGACACTCTAAGCGGACAGCCGGGGGGTGGGGG < 41bp 1 0.436069664271756 1 0.710037887096405 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RARA ENSG00000131759 CDS Human protein_coding chr17:38512361 chr17:38512358 synonymous SNV . 0 18 hm5C_associated_SNPs_23789 0 0 1 0 1 chromatin 1 0.500231643921092 0.57992422580719 0.999536712157815 hm5C_site_24601 DeepMRMD:0.57992422580719;iRNA_m5C:0.999536712157815 24602 chr12 6635459 6635459 1 + C G HNSC 6635453 + 6635433 6635473 41 CGTTGTCTTGCTCTCCACAGCCTTCTCTGGGCAAACGTCAC CGTTGTCTTGCTCTCCACAGCCTTCTGTGGGCAAACGTCAC < 41bp 1 0.0100541851406095 1 0.0853741466999054 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6635453 chr12:6635459 nonsynonymous SNV 0.873 1 27 hm5C_associated_SNPs_23791 0 0 1 0 2 Nucleus 1 0.500230221177324 1 0.999539557645353 hm5C_site_24602 DeepMRMD:1;iRNA_m5C:0.999539557645353 24603 chr11 118495765 118495765 1 + C G HNSC 118495754 + 118495734 118495774 41 CAGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCT CAGGGGGCCGAGCCCCTGGGCCCCCCTACAGGCCTGTTCCT < 41bp 1 0.0883390126769589 1 0.0501334071159363 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495754 chr11:118495765 nonsynonymous SNV 0.392 0 32 hm5C_associated_SNPs_23792 0 0 1 0 1 Cytosol 1 0.50023165769415 1 0.9995366846117 hm5C_site_24603 DeepMRMD:1;iRNA_m5C:0.9995366846117 24604 chr11 118495765 118495765 1 + C G HNSC 118495755 + 118495735 118495775 41 AGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTG AGGGGGCCGAGCCCCTGGGCCCCCCTACAGGCCTGTTCCTG < 41bp 1 0.116799259550496 1 0.0552924871444702 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495755 chr11:118495765 nonsynonymous SNV 0.392 0 31 hm5C_associated_SNPs_23793 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24604 DeepMRMD:1;iRNA_m5C:0.999536712157815 24605 chr11 118495765 118495765 1 + C G HNSC 118495756 + 118495736 118495776 41 GGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGG GGGGGCCGAGCCCCTGGGCCCCCCTACAGGCCTGTTCCTGG < 41bp 1 0.192099915216118 1 0.149046897888184 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495756 chr11:118495765 nonsynonymous SNV 0.392 0 30 hm5C_associated_SNPs_23794 0 0 1 0 1 Cytosol 1 0.500231645133106 1 0.999536709733788 hm5C_site_24605 DeepMRMD:1;iRNA_m5C:0.999536709733788 24606 chr11 118495765 118495765 1 + C G HNSC 118495757 + 118495737 118495777 41 GGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGT GGGGCCGAGCCCCTGGGCCCCCCTACAGGCCTGTTCCTGGT < 41bp 1 0.258654245382959 1 0.103819340467453 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495757 chr11:118495765 nonsynonymous SNV 0.392 0 29 hm5C_associated_SNPs_23795 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_24606 DeepMRMD:1;iRNA_m5C:0.999536712157816 24607 chr11 118495765 118495765 1 + C G HNSC 118495758 + 118495738 118495778 41 GGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGTA GGGCCGAGCCCCTGGGCCCCCCTACAGGCCTGTTCCTGGTA < 41bp 1 0.0572200698823861 1 0.512029409408569 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495758 chr11:118495765 nonsynonymous SNV 0.392 0 28 hm5C_associated_SNPs_23796 0 0 1 0 1 Cytosol 1 0.500231643921093 0.975941181182862 0.999536712157815 hm5C_site_24607 DeepMRMD:0.975941181182862;iRNA_m5C:0.999536712157815 24608 chr1 44433317 44433317 1 + G C HNSC 44433322 + 44433302 44433342 41 TCACACTGCTGTGCCGGGGTCTCCATGGCACAGATTACACA TCACACTGCTGTGCCCGGGTCTCCATGGCACAGATTACACA < 41bp 1 0.684718533935874 1 0.904116153717041 experiment 0.630562932128252 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control IPO13 ENSG00000117408 CDS Human protein_coding chr1:44433322 chr1:44433317 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_23797 0 0 1 0 1 Ribosome 1 0.500231595192029 0.191767692565918 0.999536809615941 hm5C_site_24608 DeepMRMD:0.191767692565918;iRNA_m5C:0.999536809615941 24609 chr2 29006792 29006792 1 + A G HNSC 29006781 + 29006761 29006801 41 TTTTATTTATAGGATTGTCACCAGACCTGCAATCTATGGAG TTTTATTTATAGGATTGTCACCAGACCTGCAGTCTATGGAG < 41bp 1 0.570740027583895 1 0.567758917808533 experiment 0.858519944832211 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29006781 chr2:29006792 synonymous SNV . 0 32 hm5C_associated_SNPs_23798 0 0 1 0 2 Ribosome 1 0.500231642521759 0.864482164382934 0.999536714956482 hm5C_site_24609 DeepMRMD:0.864482164382934;iRNA_m5C:0.999536714956482 24610 chr17 49247332 49247332 1 + G A HNSC 49247315 + 49247295 49247335 41 GAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCGAGT GAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCAAGT < 41bp 1 0.604526814789231 1 0.495444238185883 experiment 0.790946370421539 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247315 chr17:49247332 nonsynonymous SNV 0.930 3 38 hm5C_associated_SNPs_23799 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_24610 DeepMRMD:1;iRNA_m5C:0.999536712157815 24611 chr7 97833482 97833482 1 + G T HNSC 97833471 + 97833451 97833491 41 CCAGCTTTTCCCTCACACACCTGACCGACTCGGACATCGAG CCAGCTTTTCCCTCACACACCTGACCGACTCTGACATCGAG < 41bp 1 0.162679659302709 1 0.0653347671031952 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833471 chr7:97833482 synonymous SNV . 0 32 hm5C_associated_SNPs_23801 0 0 0 0 1 Nucleus 1 0.500228737988065 1 0.99954252402387 hm5C_site_24611 DeepMRMD:1;iRNA_m5C:0.99954252402387 24612 chr15 74240200 74240200 1 + G T HNSC 74240213 + 74240193 74240233 41 TGCCAGTGGATCGACATAACCGACGTGCAGCCTGGGAACTA TGCCAGTTGATCGACATAACCGACGTGCAGCCTGGGAACTA < 41bp 1 0.68939799786209 1 0.1915502846241 experiment 0.621204004275821 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74240213 chr15:74240200 nonsynonymous SNV 0.987 4 8 hm5C_associated_SNPs_23802 0 0 0 0 2 exosome 1 0.500231650019416 1 0.999536699961169 hm5C_site_24612 DeepMRMD:1;iRNA_m5C:0.999536699961169 24613 chr2 120124575 120124575 1 + C A HNSC 120124570 + 120124550 120124590 41 GCCAGTGCAATCTGGGCGATCGCTTCCTGGTCCTCGCCTCC GCCAGTGCAATCTGGGCGATCGCTTACTGGTCCTCGCCTCC < 41bp 1 0.284483338962409 1 0.119028300046921 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DBI ENSG00000155368 UTR5 Human protein_coding chr2:120124570 chr2:120124575 . . 0 26 hm5C_associated_SNPs_23804 0 0 1 0 2 Ribosome 1 0.500231644016911 1 0.999536711966178 hm5C_site_24613 DeepMRMD:1;iRNA_m5C:0.999536711966178 24614 chr8 100182343 100182343 1 + C G HNSC 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCAGTTATTCCCTGTTTCAGC < 41bp 1 0.073191086339573 1 0.120881170034409 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182343 nonsynonymous SNV 0.998 2 34 hm5C_associated_SNPs_23805 0 0 1 0 2 Nucleus 1 0.500231643920207 1 0.999536712159586 hm5C_site_24614 DeepMRMD:1;iRNA_m5C:0.999536712159586 24615 chr10 43882406 43882406 1 + G A HNSC 43882399 - 43882379 43882419 41 TTTACAACTTCTTCTCTCCTCTCAACCCTGTGAGAGTCCAT TTTACAACTTCTTTTCTCCTCTCAACCCTGTGAGAGTCCAT < 41bp 1 0.596715720961738 1 0.757089495658875 experiment 0.806568558076525 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPF ENSG00000169813 CDS Human protein_coding chr10:43882399 chr10:43882406 synonymous SNV . 0 14 hm5C_associated_SNPs_23806 0 0 1 0 0 Cytosol 1 0.50023164304628 0.48582100868225 0.99953671390744 hm5C_site_24615 DeepMRMD:0.48582100868225;iRNA_m5C:0.99953671390744 24616 chr1 235600733 235600733 1 + G T HNSC 235600742 + 235600722 235600762 41 AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGC AAGCAGAGACGTCGCGACTACTCATTATCGCCAGCATTGGC < 41bp 1 0.496784460824425 1 0.0647241473197937 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235600742 chr1:235600733 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_23807 0 0 1 0 1 chromatin 1 0.500231564058664 1 0.999536871882672 hm5C_site_24616 DeepMRMD:1;iRNA_m5C:0.999536871882672 24617 chr3 119135065 119135065 1 + G A HNSC 119135071 + 119135051 119135091 41 TTACCAGCCTCAGCGGAGATCAGTAATTCTGGATGGAAGAA TTACCAGCCTCAGCAGAGATCAGTAATTCTGGATGGAAGAA < 41bp 1 0.228036129739179 1 0.307019412517548 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119135071 chr3:119135065 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_23808 0 0 0 0 0 cytosol 1 0.500231593709675 1 0.999536812580649 hm5C_site_24617 DeepMRMD:1;iRNA_m5C:0.999536812580649 24618 chrX 9652149 9652149 1 + C T HNSC 9652130 + 9652110 9652150 41 GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGGGACG GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGGGATG < 41bp 1 0.108985744452374 1 0.58643251657486 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9652130 chrX:9652149 nonsynonymous SNV 0.974 2 40 hm5C_associated_SNPs_23809 0 0 0 0 2 Cytosol 1 0.500231659894107 0.82713496685028 0.999536680211787 hm5C_site_24618 DeepMRMD:0.82713496685028;iRNA_m5C:0.999536680211787 24619 chr6 151672243 151672243 1 + T C HNSC 151672255 + 151672235 151672275 41 TACCATTATTGAAGAAAGGTCTCCTTCTTGGATATCTGCTT TACCATTACTGAAGAAAGGTCTCCTTCTTGGATATCTGCTT < 41bp 1 0.14277093748947 1 0.340678572654724 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151672255 chr6:151672243 nonsynonymous SNV 0.018 1 9 hm5C_associated_SNPs_23811 0 0 1 0 0 Ribosome 1 0.500231641126647 1 0.999536717746706 hm5C_site_24619 DeepMRMD:1;iRNA_m5C:0.999536717746706 24620 chr11 209939 209939 1 + T C HNSC 209927 + 209907 209947 41 GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCC GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCACGGAGATCC < 41bp 1 0.581217317301734 1 0.334607839584351 experiment 0.837565365396532 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209927 chr11:209939 nonsynonymous SNV 0.991 2 33 hm5C_associated_SNPs_23812 0 0 1 0 1 Ribosome 1 0.50023263697047 1 0.999534726059059 hm5C_site_24620 DeepMRMD:1;iRNA_m5C:0.999534726059059 24621 chr7 142458409 142458409 1 + C T HNSC 142458412 + 142458392 142458432 41 CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACA CATCTCCACTCCAGTTGTTGCCCCCTTTGATGATGATGACA < 41bp 1 0.0280777780606842 1 0.289799094200134 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458412 chr7:142458409 nonsynonymous SNV 0.112 3 18 hm5C_associated_SNPs_23813 0 0 0 0 1 Cytosol 1 0.500232136171979 1 0.999535727656042 hm5C_site_24621 DeepMRMD:1;iRNA_m5C:0.999535727656042 24622 chr7 142458409 142458409 1 + C T HNSC 142458413 + 142458393 142458433 41 ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAA ATCTCCACTCCAGTTGTTGCCCCCTTTGATGATGATGACAA < 41bp 1 0.0712574568906007 1 0.172885805368423 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458413 chr7:142458409 nonsynonymous SNV 0.112 3 17 hm5C_associated_SNPs_23814 0 0 0 0 1 Cytosol 1 0.500231653059738 1 0.999536693880524 hm5C_site_24622 DeepMRMD:1;iRNA_m5C:0.999536693880524 24623 chr7 142458409 142458409 1 + C T HNSC 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGTTGCCCCCTTTGATGATGATGACAAG < 41bp 1 0.030522419714203 1 0.151766628026962 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458409 nonsynonymous SNV 0.112 3 16 hm5C_associated_SNPs_23815 0 0 0 0 1 Cytosol 1 0.500231643936135 1 0.999536712127731 hm5C_site_24623 DeepMRMD:1;iRNA_m5C:0.999536712127731 24624 chr7 142458409 142458409 1 + C T HNSC 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGTTGCCCCCTTTGATGATGATGACAAGA < 41bp 1 0.00284973872535754 1 0.0682011544704437 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458409 nonsynonymous SNV 0.112 3 15 hm5C_associated_SNPs_23816 0 0 0 0 1 Cytosol 1 0.500231748262068 1 0.999536503475863 hm5C_site_24624 DeepMRMD:1;iRNA_m5C:0.999536503475863 24625 chr7 142458409 142458409 1 + C T HNSC 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGTTGCCCCCTTTGATGATGATGACAAGAT < 41bp 1 0.0440464128476645 1 0.0783901214599609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458409 nonsynonymous SNV 0.112 3 14 hm5C_associated_SNPs_23817 0 0 0 0 1 Cytosol 1 0.500231643918558 1 0.999536712162884 hm5C_site_24625 DeepMRMD:1;iRNA_m5C:0.999536712162884 24626 chr10 31812948 31812948 1 + C A HNSC 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGAGGA < 41bp 1 0.254973306142583 1 0.265950620174408 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812948 synonymous SNV . 0 38 hm5C_associated_SNPs_23818 0 0 1 0 1 Nucleus 1 0.500231643921101 1 0.999536712157797 hm5C_site_24626 DeepMRMD:1;iRNA_m5C:0.999536712157797 24627 chr7 2472414 2472414 1 + C T HNSC 2472416 + 2472396 2472436 41 CTAGGCCGCACACGGGGCCGCCGCTGCCCACGCCCGGGCCG CTAGGCCGCACACGGGGCTGCCGCTGCCCACGCCCGGGCCG < 41bp 1 0.498478479974919 1 0.137936621904373 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472416 chr7:2472414 nonsynonymous SNV 0.000 0 19 hm5C_associated_SNPs_23819 0 0 1 0 0 nucleolus 1 0.500231643921101 1 0.999536712157798 hm5C_site_24627 DeepMRMD:1;iRNA_m5C:0.999536712157798 24628 chr1 28861634 28861634 1 + G A HNSC 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATATGCCTGTGGTAAAGGTGGCCTCA < 41bp 1 0.357647673457926 1 0.315275281667709 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861634 nonsynonymous SNV 0.015 0 18 hm5C_associated_SNPs_23820 0 0 1 0 2 Ribosome 1 0.500231643921509 1 0.999536712156982 hm5C_site_24628 DeepMRMD:1;iRNA_m5C:0.999536712156982 24629 chr2 233273006 233273006 1 + G T HNSC 233272995 + 233272975 233273015 41 AGGTGATCCTAGGTGGAGGCCGAAAGTACATGTTTCCCATG AGGTGATCCTAGGTGGAGGCCGAAAGTACATTTTTCCCATG < 41bp 1 0.665446848704857 1 0.366143345832825 experiment 0.669106302590286 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233272995 chr2:233273006 nonsynonymous SNV 0.370 3 32 hm5C_associated_SNPs_23821 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24629 DeepMRMD:1;iRNA_m5C:0.999536712157815 24630 chr1 44878355 44878355 1 + C T HNSC 44878350 + 44878330 44878370 41 TGCTGTCTCTGGCCTCATTTCTGATCGGGAAGCCTCATCTA TGCTGTCTCTGGCCTCATTTCTGATTGGGAAGCCTCATCTA < 41bp 1 0.565309006403463 1 0.798585295677185 experiment 0.869381987193075 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878350 chr1:44878355 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_23822 0 0 1 0 1 Ribosome 1 0.500231644622872 0.40282940864563 0.999536710754257 hm5C_site_24630 DeepMRMD:0.40282940864563;iRNA_m5C:0.999536710754257 24631 chr1 44878355 44878355 1 + C T HNSC 44878373 + 44878353 44878393 41 ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA ATTGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA < 41bp 1 0.506774486382585 1 0.22364404797554 experiment 0.98645102723483 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878373 chr1:44878355 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_23823 0 0 1 0 1 Ribosome 1 0.500231643924791 1 0.999536712150419 hm5C_site_24631 DeepMRMD:1;iRNA_m5C:0.999536712150419 24632 chr10 94773979 94773979 1 + A G HNSC 94773982 + 94773962 94774002 41 TCTGAGCCTGTGCCAGGATTCCAGGGGGATACCCTGCAGCT TCTGAGCCTGTGCCAGGGTTCCAGGGGGATACCCTGCAGCT < 41bp 1 0.63056989179689 1 0.790661871433258 experiment 0.738860216406221 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94773982 chr10:94773979 synonymous SNV . 0 18 hm5C_associated_SNPs_23824 0 0 1 0 1 Cytosol 1 0.500231643921092 0.418676257133484 0.999536712157815 hm5C_site_24632 DeepMRMD:0.418676257133484;iRNA_m5C:0.999536712157815 24633 chr4 123814172 123814172 1 + C A HNSC 123814174 - 123814154 123814194 41 AGTGGATGGATCTCAATGACCTGGCGAAGACTGAAAATACA AGTGGATGGATCTCAATGACCTTGCGAAGACTGAAAATACA < 41bp 1 0.334151114621728 1 0.0737458467483521 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT6 ENSG00000170917 CDS Human protein_coding chr4:123814174 chr4:123814172 synonymous SNV . 0 23 hm5C_associated_SNPs_23825 0 0 1 0 0 Ribosome 1 0.500233662046451 1 0.999532675907099 hm5C_site_24633 DeepMRMD:1;iRNA_m5C:0.999532675907099 24634 chr3 184648306 184648306 1 + A T HNSC 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACTGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA < 41bp 1 0.103538214369866 1 0.332906037569046 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648306 nonsynonymous SNV 0.998 3 6 hm5C_associated_SNPs_23826 0 0 1 0 2 chromatin 1 0.500231643921058 1 0.999536712157884 hm5C_site_24634 DeepMRMD:1;iRNA_m5C:0.999536712157884 24635 chr13 24858302 24858302 1 + G T HNSC 24858291 + 24858271 24858311 41 AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG AGTTTCTTCAGATGGAGGTACTGAGCCCTCTTCCTTAGTGG < 41bp 1 0.154201118113062 1 0.323364615440369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858291 chr13:24858302 nonsynonymous SNV 0.719 0 32 hm5C_associated_SNPs_23827 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_24635 DeepMRMD:1;iRNA_m5C:0.999536712157817 24636 chr19 50912134 50912134 1 + G A HNSC 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACGCTCCTTCAGCCCGGGACTG < 41bp 1 0.186532658782493 1 0.0524135529994965 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912134 nonsynonymous SNV 0.068 0 30 hm5C_associated_SNPs_23828 1 0 1 0 2 Nucleus 1 0.500231643906834 1 0.999536712186333 hm5C_site_24636 DeepMRMD:1;iRNA_m5C:0.999536712186333 not specified not specified 24637 chr16 46960923 46960923 1 + G A HNSC 46960906 + 46960886 46960926 41 AGACTGGCATCTGTGTCGTGCCCGGCAGTGGCTTTGGGCAG AGACTGGCATCTGTGTCGTGCCCGGCAGTGGCTTTGGACAG < 41bp 1 0.331761877079614 1 0.0881169140338898 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPT2 ENSG00000166123 CDS Human protein_coding chr16:46960906 chr16:46960923 synonymous SNV . 0 38 hm5C_associated_SNPs_23829 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24637 DeepMRMD:1;iRNA_m5C:0.999536712157815 24638 chr19 50339143 50339143 1 + C T HNSC 50339146 + 50339126 50339166 41 CTCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAAC CTCCTGGACCCATCCTTTGGCCCCAGAACCCTGGGGCCAAC < 41bp 1 0.497240907447486 1 0.113131880760193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339146 chr19:50339143 nonsynonymous SNV 0.998 3 18 hm5C_associated_SNPs_23831 0 0 1 0 1 chromatin 1 0.500231644245004 1 0.999536711509992 hm5C_site_24638 DeepMRMD:1;iRNA_m5C:0.999536711509992 24639 chr19 50339143 50339143 1 + C T HNSC 50339147 + 50339127 50339167 41 TCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACC TCCTGGACCCATCCTTTGGCCCCAGAACCCTGGGGCCAACC < 41bp 1 0.177438025805819 1 0.0579069554805756 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339147 chr19:50339143 nonsynonymous SNV 0.998 3 17 hm5C_associated_SNPs_23832 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24639 DeepMRMD:1;iRNA_m5C:0.999536712157815 24640 chr19 50339143 50339143 1 + C T HNSC 50339148 + 50339128 50339168 41 CCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCC CCTGGACCCATCCTTTGGCCCCAGAACCCTGGGGCCAACCC < 41bp 1 0.443978945397262 1 0.0949753224849701 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339148 chr19:50339143 nonsynonymous SNV 0.998 3 16 hm5C_associated_SNPs_23833 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24640 DeepMRMD:1;iRNA_m5C:0.999536712157815 24641 chr19 50339143 50339143 1 + C T HNSC 50339149 + 50339129 50339169 41 CTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCCT CTGGACCCATCCTTTGGCCCCAGAACCCTGGGGCCAACCCT < 41bp 1 0.443619532128233 1 0.148937791585922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339149 chr19:50339143 nonsynonymous SNV 0.998 3 15 hm5C_associated_SNPs_23834 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24641 DeepMRMD:1;iRNA_m5C:0.999536712157815 24642 chr19 50339143 50339143 1 + C T HNSC 50339162 + 50339142 50339182 41 TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC TTGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC < 41bp 1 0.0154895177581773 1 0.0361185073852539 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339162 chr19:50339143 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_23835 0 0 1 0 1 chromatin 1 0.50023164392109 1 0.99953671215782 hm5C_site_24642 DeepMRMD:1;iRNA_m5C:0.99953671215782 24643 chr19 50339143 50339143 1 + C T HNSC 50339163 + 50339143 50339183 41 CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT TGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT < 41bp 1 0.113951230137179 1 0.0475023984909058 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339163 chr19:50339143 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_23836 0 0 1 0 1 chromatin 1 0.500231643298007 1 0.999536713403986 hm5C_site_24643 DeepMRMD:1;iRNA_m5C:0.999536713403986 24644 chr12 124144433 124144433 1 + G A HNSC 124144415 + 124144395 124144435 41 AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCAAA < 41bp 1 0.362730717634237 1 0.0412617325782776 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144415 chr12:124144433 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_23837 0 0 1 0 2 Cytosol 1 0.500231491589929 1 0.999537016820142 hm5C_site_24644 DeepMRMD:1;iRNA_m5C:0.999537016820142 24645 chr5 71492252 71492252 1 + G A HNSC 71492268 + 71492248 71492288 41 GGAGGACAAAGCTGAAGATGCCAGAGAGGAGGAATATGAGC GGAGAACAAAGCTGAAGATGCCAGAGAGGAGGAATATGAGC < 41bp 1 0.440425872042108 1 0.283119916915894 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71492268 chr5:71492252 nonsynonymous SNV 0.995 2 5 hm5C_associated_SNPs_23838 0 0 1 0 0 Cytosol 1 0.500231646082836 1 0.999536707834328 hm5C_site_24645 DeepMRMD:1;iRNA_m5C:0.999536707834328 24646 chr17 33321390 33321390 1 + T G HNSC 33321403 + 33321383 33321423 41 AGGTGCATAAGAATGGAGACCACTTCAGCTACTTCAGCCGC AGGTGCAGAAGAATGGAGACCACTTCAGCTACTTCAGCCGC < 41bp 1 0.252250760419552 1 0.0698825418949127 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33321403 chr17:33321390 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_23839 0 0 1 0 1 Cytosol 1 0.500231643920775 1 0.99953671215845 hm5C_site_24646 DeepMRMD:1;iRNA_m5C:0.99953671215845 24647 chr5 179153693 179153693 1 + A G HNSC 179153689 + 179153669 179153709 41 CTTCTGTCTTAGAAGAGAAACAGAAAAGTGATGCTGAAGAA CTTCTGTCTTAGAAGAGAAACAGAGAAGTGATGCTGAAGAA < 41bp 1 0.532101214143523 1 0.452913403511047 experiment 0.935797571712955 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153689 chr5:179153693 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_23840 0 0 1 0 2 Nucleus 1 0.500231643923569 1 0.999536712152862 hm5C_site_24647 DeepMRMD:1;iRNA_m5C:0.999536712152862 24648 chr9 133738189 133738189 1 + G T HNSC 133738171 + 133738151 133738191 41 TCTACGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAG TCTACGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCTAG < 41bp 1 0.116313198931886 1 0.200679332017899 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133738171 chr9:133738189 stopgain 0.861 1 39 hm5C_associated_SNPs_23842 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645024229 1 0.999536709951541 hm5C_site_24648 DeepMRMD:1;iRNA_m5C:0.999536709951541 24649 chr17 59482066 59482066 1 + C T HNSC 59482065 + 59482045 59482085 41 CTCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCT CTCGTCGTGCGACCCTCCCCCTGCGCGGGAACCACCCACCT < 41bp 1 0.664799930499548 1 0.714439511299133 experiment 0.670400139000904 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482065 chr17:59482066 synonymous SNV . 0 22 hm5C_associated_SNPs_23843 0 0 0 0 2 Cytosol 1 0.500231643928744 0.571120977401734 0.999536712142511 hm5C_site_24649 DeepMRMD:0.571120977401734;iRNA_m5C:0.999536712142511 24650 chr11 64978326 64978326 1 + A G HNSC 64978306 + 64978286 64978326 41 ATTTTTCAAAACTCTGGACACAGATCTGGATGGAGTTGTGA ATTTTTCAAAACTCTGGACACAGATCTGGATGGAGTTGTGG < 41bp 1 0.147763642743766 1 0.0594829916954041 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64978306 chr11:64978326 nonsynonymous SNV 0.980 0 41 hm5C_associated_SNPs_23844 0 0 1 0 2 Ribosome 1 0.50023164452953 1 0.99953671094094 hm5C_site_24650 DeepMRMD:1;iRNA_m5C:0.99953671094094 24651 chr20 44045291 44045291 1 + T A HNSC 44045286 + 44045266 44045306 41 GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGT GGGGCCACCCTTCCTGCAGGCCCCAACAGGTGCAGAGCTGT < 41bp 1 0.595662926667093 1 0.113614499568939 experiment 0.808674146665814 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045286 chr20:44045291 nonsynonymous SNV 0.996 1 26 hm5C_associated_SNPs_23845 0 0 1 0 3 Ribosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_24651 DeepMRMD:1;iRNA_m5C:0.999536712157806 24652 chr20 44045291 44045291 1 + T A HNSC 44045287 + 44045267 44045307 41 GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTG GGGCCACCCTTCCTGCAGGCCCCAACAGGTGCAGAGCTGTG < 41bp 1 0.442993534024434 1 0.16219174861908 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045287 chr20:44045291 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_23846 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24652 DeepMRMD:1;iRNA_m5C:0.999536712157815 24653 chr20 44045291 44045291 1 + T A HNSC 44045288 + 44045268 44045308 41 GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGG GGCCACCCTTCCTGCAGGCCCCAACAGGTGCAGAGCTGTGG < 41bp 1 0.205913488801158 1 0.342660844326019 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045288 chr20:44045291 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_23847 0 0 1 0 3 Ribosome 1 0.500231643914882 1 0.999536712170237 hm5C_site_24653 DeepMRMD:1;iRNA_m5C:0.999536712170237 24654 chr12 44166765 44166765 1 + G A HNSC 44166754 + 44166734 44166774 41 TTATGAATTGAAGAATGTCACAAATAACTTTGATGAACGAC TTATGAATTGAAGAATGTCACAAATAACTTTAATGAACGAC < 41bp 1 0.216964388563155 1 0.39663690328598 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166754 chr12:44166765 nonsynonymous SNV 0.995 2 32 hm5C_associated_SNPs_23849 0 0 1 0 1 Cytosol 1 0.500231643689884 1 0.999536712620233 hm5C_site_24654 DeepMRMD:1;iRNA_m5C:0.999536712620233 24655 chr4 159627834 159627834 1 + C G HNSC 159627823 + 159627803 159627843 41 GCCAGCCAAGGATTGCACACCTATTGAGTATCCAAAACCCG GCCAGCCAAGGATTGCACACCTATTGAGTATGCAAAACCCG < 41bp 1 0.155080491005368 1 0.0906568169593811 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETFDH ENSG00000171503 CDS Human protein_coding chr4:159627823 chr4:159627834 nonsynonymous SNV 0.996 5 32 hm5C_associated_SNPs_23850 0 0 0 0 1 Ribosome 1 0.500231892599852 1 0.999536214800296 hm5C_site_24655 DeepMRMD:1;iRNA_m5C:0.999536214800296 24656 chr2 27662654 27662654 1 + C T HNSC 27662638 + 27662618 27662658 41 TGTTTCCTTTTCTAGGAGTTCATTCAAAAGTGCCTGCAGTC TGTTTCCTTTTCTAGGAGTTCATTCAAAAGTGCCTGTAGTC < 41bp 1 0.0466727743894173 1 0.0635263621807098 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27662638 chr2:27662654 stopgain 1.000 1 37 hm5C_associated_SNPs_23851 0 0 1 0 1 Cytosol 1 0.50023164391659 1 0.999536712166821 hm5C_site_24656 DeepMRMD:1;iRNA_m5C:0.999536712166821 24657 chr15 96875682 96875682 1 + C A HNSC 96875664 + 96875644 96875684 41 AAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGC AAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGAGC < 41bp 1 0.497611518640926 1 0.470450818538666 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F2 ENSG00000185551 CDS Human protein_coding chr15:96875664 chr15:96875682 synonymous SNV . 0 39 hm5C_associated_SNPs_23852 0 0 1 0 1 Cytoplasm 1 0.500231643921093 1 0.999536712157813 hm5C_site_24657 DeepMRMD:1;iRNA_m5C:0.999536712157813 24658 chr16 24826581 24826581 1 + C T HNSC 24826598 + 24826578 24826618 41 CCACGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTG CCATGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTG < 41bp 1 0.42216024419345 1 0.141025215387344 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24826598 chr16:24826581 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23853 0 0 1 0 1 Nucleus 1 0.500231643921056 1 0.999536712157889 hm5C_site_24658 DeepMRMD:1;iRNA_m5C:0.999536712157889 24659 chr9 129974476 129974476 1 + G A HNSC 129974474 + 129974454 129974494 41 TGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTC TGCCCACCATGGAGGGGCCTCTAAGAAGAAAAACCCTGCTC < 41bp 1 0.447991607842316 1 0.424405694007874 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129974474 chr9:129974476 synonymous SNV . 0 23 hm5C_associated_SNPs_23854 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24659 DeepMRMD:1;iRNA_m5C:0.999536712157815 24660 chr19 14512333 14512333 1 + C T HNSC 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAAGATATCATGAGGATCCTGGCCAAGAGCTTGCCTAA < 41bp 1 0.258145975923654 1 0.0665218532085419 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512333 synonymous SNV . 0 34 hm5C_associated_SNPs_23855 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24660 DeepMRMD:1;iRNA_m5C:0.999536712157815 24661 chr7 129046276 129046276 1 + G A HNSC 129046285 + 129046265 129046305 41 TGTATGTAACTGAAATTGACCCCATCTGTGCCCTGCAAGCC TGTATGTAACTAAAATTGACCCCATCTGTGCCCTGCAAGCC < 41bp 1 0.0895083586649911 1 0.0345128178596497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129046285 chr7:129046276 nonsynonymous SNV 0.998 5 12 hm5C_associated_SNPs_23856 0 0 1 0 2 chromatin 1 0.500231652221694 1 0.999536695556612 hm5C_site_24661 DeepMRMD:1;iRNA_m5C:0.999536695556612 24662 chr5 149754329 149754329 1 + G A HNSC 149754323 + 149754303 149754343 41 GCGGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGA GCGGGGAAGCGGGAGGAGGACTCGCAAAGCAGCAGCGAGGA < 41bp 1 0.583299627975167 1 0.270928919315338 experiment 0.833400744049666 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754323 chr5:149754329 synonymous SNV . 0 27 hm5C_associated_SNPs_23857 0 0 1 0 1 Nucleus 1 0.500231643924404 1 0.999536712151192 hm5C_site_24662 DeepMRMD:1;iRNA_m5C:0.999536712151192 24663 chr5 149754329 149754329 1 + G A HNSC 149754335 + 149754315 149754355 41 GAGGAGGACTCGCAGAGCAGCAGCGAGGAATCGGACAGTGA GAGGAGGACTCGCAAAGCAGCAGCGAGGAATCGGACAGTGA < 41bp 1 0.53817263603784 1 0.325180172920227 experiment 0.923654727924321 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754335 chr5:149754329 synonymous SNV . 0 15 hm5C_associated_SNPs_23859 0 0 1 0 1 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_24663 DeepMRMD:1;iRNA_m5C:0.999536712157818 24664 chr11 119054012 119054012 1 + G A HNSC 119054023 + 119054003 119054043 41 GGGTTCAGCGACACCTTGAGCTCCTACTGCGGGATCTGGAA GGGTTCAGCAACACCTTGAGCTCCTACTGCGGGATCTGGAA < 41bp 1 0.264406404906216 1 0.0787189900875092 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119054023 chr11:119054012 nonsynonymous SNV 0.352 0 10 hm5C_associated_SNPs_23860 0 0 0 0 0 exosome 1 0.500231643921487 1 0.999536712157027 hm5C_site_24664 DeepMRMD:1;iRNA_m5C:0.999536712157027 24665 chr11 118267058 118267058 1 + C T HNSC 118267077 + 118267057 118267097 41 CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA CTCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA < 41bp 1 0.216523790865439 1 0.284682959318161 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118267077 chr11:118267058 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_23861 0 0 1 0 1 Nucleus 1 0.500231609121777 1 0.999536781756445 hm5C_site_24665 DeepMRMD:1;iRNA_m5C:0.999536781756445 24666 chr2 189458684 189458684 1 + A T HNSC 189458701 + 189458681 189458721 41 GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT GGGTCTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT < 41bp 1 0.596566234559943 1 0.0931767225265503 experiment 0.806867530880114 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458701 chr2:189458684 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_23862 0 0 1 2 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24666 DeepMRMD:1;iRNA_m5C:0.999536712157815 24667 chr11 118267059 118267059 1 + C T HNSC 118267077 + 118267057 118267097 41 CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA CCTCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA < 41bp 1 0.242147759748033 1 0.248868972063065 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118267077 chr11:118267059 synonymous SNV . 0 3 hm5C_associated_SNPs_23863 0 0 1 0 1 Nucleus 1 0.500231643937793 1 0.999536712124415 hm5C_site_24667 DeepMRMD:1;iRNA_m5C:0.999536712124415 24668 chr11 110035195 110035195 1 + G A HNSC 110035177 + 110035157 110035197 41 CATGTCTAGAAATACGGCAGCCAAAACTGCAAACGAAGGAG CATGTCTAGAAATACGGCAGCCAAAACTGCAAACGAAGAAG < 41bp 1 0.179925273537179 1 0.164308249950409 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035177 chr11:110035195 nonsynonymous SNV 0.126 1 39 hm5C_associated_SNPs_23865 0 0 1 0 0 Endoplasmic reticulum 1 0.500231640355496 1 0.999536719289007 hm5C_site_24668 DeepMRMD:1;iRNA_m5C:0.999536719289007 24669 chr11 110035195 110035195 1 + G A HNSC 110035178 + 110035158 110035198 41 ATGTCTAGAAATACGGCAGCCAAAACTGCAAACGAAGGAGG ATGTCTAGAAATACGGCAGCCAAAACTGCAAACGAAGAAGG < 41bp 1 0.456379997052607 1 0.491971701383591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035178 chr11:110035195 nonsynonymous SNV 0.126 1 38 hm5C_associated_SNPs_23866 0 0 1 0 0 Endoplasmic reticulum 1 0.500229207416169 1 0.999541585167661 hm5C_site_24669 DeepMRMD:1;iRNA_m5C:0.999541585167661 24670 chr7 142459768 142459768 1 + C G HNSC 142459748 + 142459728 142459768 41 AAGACTCTGAACAATGACATCATGTTAATCAAGCTCTCCTC AAGACTCTGAACAATGACATCATGTTAATCAAGCTCTCCTG < 41bp 1 0.575158048967311 1 0.0384822189807892 experiment 0.849683902065379 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459748 chr7:142459768 stopgain 0.000 0 41 hm5C_associated_SNPs_23867 0 0 0 0 0 Cytosol 1 0.500229151860446 1 0.999541696279107 hm5C_site_24670 DeepMRMD:1;iRNA_m5C:0.999541696279107 24671 chr7 142459768 142459768 1 + C G HNSC 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATGACATCATGTTAATCAAGCTCTCCTGACGTGCAGT < 41bp 1 0.49184554190744 1 0.637101173400879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459768 stopgain 0.000 0 32 hm5C_associated_SNPs_23868 0 0 0 0 0 Cytosol 1 0.50023164394276 0.725797653198242 0.99953671211448 hm5C_site_24671 DeepMRMD:0.725797653198242;iRNA_m5C:0.99953671211448 24672 chr7 142459768 142459768 1 + C G HNSC 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATGACATCATGTTAATCAAGCTCTCCTGACGTGCAGTAATC < 41bp 1 0.170292313447376 1 0.0456475019454956 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459768 stopgain 0.000 0 28 hm5C_associated_SNPs_23869 0 0 0 0 0 Cytosol 1 0.500231728658229 1 0.999536542683543 hm5C_site_24672 DeepMRMD:1;iRNA_m5C:0.999536542683543 24673 chr7 142459768 142459768 1 + C G HNSC 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA GACATCATGTTAATCAAGCTCTCCTGACGTGCAGTAATCAA < 41bp 1 0.526095608603233 1 0.347214370965958 experiment 0.947808782793535 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459768 stopgain 0.000 0 26 hm5C_associated_SNPs_23870 0 0 0 0 0 Cytosol 1 0.500231644080718 1 0.999536711838565 hm5C_site_24673 DeepMRMD:1;iRNA_m5C:0.999536711838565 24674 chr7 142459768 142459768 1 + C G HNSC 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG CATCATGTTAATCAAGCTCTCCTGACGTGCAGTAATCAACG < 41bp 1 0.474070305355395 1 0.317257225513458 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459768 stopgain 0.000 0 24 hm5C_associated_SNPs_23871 0 0 0 0 0 Cytosol 1 0.500231646334163 1 0.999536707331674 hm5C_site_24674 DeepMRMD:1;iRNA_m5C:0.999536707331674 24675 chr7 142459768 142459768 1 + C G HNSC 142459766 + 142459746 142459786 41 ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC ATCATGTTAATCAAGCTCTCCTGACGTGCAGTAATCAACGC < 41bp 1 0.430882774661316 1 0.235766649246216 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459766 chr7:142459768 stopgain 0.000 0 23 hm5C_associated_SNPs_23872 0 0 0 0 0 Cytosol 1 0.500232296932261 1 0.999535406135479 hm5C_site_24675 DeepMRMD:1;iRNA_m5C:0.999535406135479 24676 chr7 142459768 142459768 1 + C G HNSC 142459770 + 142459750 142459790 41 TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC TGTTAATCAAGCTCTCCTGACGTGCAGTAATCAACGCCCGC < 41bp 1 0.332528977452018 1 0.0939036309719086 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459770 chr7:142459768 stopgain 0.000 0 19 hm5C_associated_SNPs_23873 0 0 0 0 0 Cytosol 1 0.500231643805821 1 0.999536712388359 hm5C_site_24676 DeepMRMD:1;iRNA_m5C:0.999536712388359 24677 chr7 142459768 142459768 1 + C G HNSC 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTGACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC < 41bp 1 0.64473608863235 1 0.309465825557709 experiment 0.7105278227353 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459768 stopgain 0.000 0 5 hm5C_associated_SNPs_23876 0 0 0 0 0 Cytosol 1 0.500231653829299 1 0.999536692341402 hm5C_site_24677 DeepMRMD:1;iRNA_m5C:0.999536692341402 24678 chr7 142459768 142459768 1 + C G HNSC 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTGACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC < 41bp 1 0.516352382483884 1 0.0690669417381287 experiment 0.967295235032233 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459768 stopgain 0.000 0 3 hm5C_associated_SNPs_23877 0 0 0 0 0 Cytosol 1 0.500231810822006 1 0.999536378355987 hm5C_site_24678 DeepMRMD:1;iRNA_m5C:0.999536378355987 24679 chr7 142459768 142459768 1 + C G HNSC 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TGACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT < 41bp 1 0.482367237844508 1 0.0544889569282532 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459768 stopgain 0.000 0 2 hm5C_associated_SNPs_23878 0 0 0 0 0 Cytosol 1 0.500231648686709 1 0.999536702626582 hm5C_site_24679 DeepMRMD:1;iRNA_m5C:0.999536702626582 24680 chr13 76382245 76382245 1 + C G HNSC 76382234 + 76382214 76382254 41 GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCTG GGAACTACCGTGCCTCCCATCAGTTTCACCCGTGGCCCCTG < 41bp 1 0.271524194405342 1 0.823404610157013 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76382234 chr13:76382245 nonsynonymous SNV 0.919 4 32 hm5C_associated_SNPs_23880 0 0 1 0 1 Cytosol 1 0.500231643921092 0.353190779685974 0.999536712157815 hm5C_site_24680 DeepMRMD:0.353190779685974;iRNA_m5C:0.999536712157815 24681 chr10 43316394 43316394 1 + C T HNSC 43316391 + 43316371 43316411 41 TTTCCTTTAAGGCCCTATCACTCCACAGGGAACTGGTTTCT TTTCCTTTAAGGCCCTATCACTCTACAGGGAACTGGTTTCT < 41bp 1 0.465628686426088 1 0.846824169158936 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43316391 chr10:43316394 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_23881 0 0 1 0 2 chromatin 1 0.500231643921092 0.306351661682128 0.999536712157815 hm5C_site_24681 DeepMRMD:0.306351661682128;iRNA_m5C:0.999536712157815 24682 chr3 49742512 49742512 1 + C T HNSC 49742520 + 49742500 49742540 41 CAACCGCTTCCTCAGCACAGCGGCTGTGAGCCTCATGACCC CAACCGCTTCCTTAGCACAGCGGCTGTGAGCCTCATGACCC < 41bp 1 0.443539150150453 1 0.198510527610779 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742520 chr3:49742512 synonymous SNV . 0 13 hm5C_associated_SNPs_23882 0 0 1 0 1 Nucleus 1 0.500231643919786 1 0.999536712160428 hm5C_site_24682 DeepMRMD:1;iRNA_m5C:0.999536712160428 24683 chr8 144801638 144801638 1 + C T HNSC 144801634 + 144801614 144801654 41 AGCTGATCCTGGAGACCATCCCACCGCCATCTGAGGAGGGT AGCTGATCCTGGAGACCATCCCACTGCCATCTGAGGAGGGT < 41bp 1 0.12049903664224 1 0.16099226474762 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144801634 chr8:144801638 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_23883 0 0 1 0 0 chromatin 1 0.500231387270017 1 0.999537225459966 hm5C_site_24683 DeepMRMD:1;iRNA_m5C:0.999537225459966 24684 chr14 105355876 105355876 1 + C T HNSC 105355874 + 105355854 105355894 41 ACGAGGCGCCGGCAGCAGGGCTCGGATTACACGTCCACCTC ACGAGGCGCCGGCAGCAGGGCTTGGATTACACGTCCACCTC < 41bp 1 0.266806332673823 1 0.111169129610062 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105355874 chr14:105355876 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_23884 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24684 DeepMRMD:1;iRNA_m5C:0.999536712157815 24685 chr20 32217677 32217677 1 + C T HNSC 32217687 + 32217667 32217707 41 CCGAGTTGGTCTCCAGGCAGCACAGCCCTGGGAGTGCAGAT CCGAGTTGGTTTCCAGGCAGCACAGCCCTGGGAGTGCAGAT < 41bp 1 0.295469190443659 1 0.0861987173557281 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBFA2T2 ENSG00000078699 CDS Human protein_coding chr20:32217687 chr20:32217677 synonymous SNV . 0 11 hm5C_associated_SNPs_23885 0 0 1 0 1 Nucleus 1 0.500231643921095 1 0.99953671215781 hm5C_site_24685 DeepMRMD:1;iRNA_m5C:0.99953671215781 24686 chr20 32217677 32217677 1 + C T HNSC 32217689 + 32217669 32217709 41 GAGTTGGTCTCCAGGCAGCACAGCCCTGGGAGTGCAGATTC GAGTTGGTTTCCAGGCAGCACAGCCCTGGGAGTGCAGATTC < 41bp 1 0.401923116347318 1 0.0373454093933105 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBFA2T2 ENSG00000078699 CDS Human protein_coding chr20:32217689 chr20:32217677 synonymous SNV . 0 9 hm5C_associated_SNPs_23886 0 0 1 0 1 Nucleus 1 0.500231643921101 1 0.999536712157797 hm5C_site_24686 DeepMRMD:1;iRNA_m5C:0.999536712157797 24687 chr9 131897100 131897100 1 + C T HNSC 131897102 + 131897082 131897122 41 GCAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG GCAGCCTTCGCTGCTTTCTTCTGCTGTCTCTGCAAGATTGG < 41bp 1 0.486581427926211 1 0.359908640384674 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131897102 chr9:131897100 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_23887 0 0 1 0 2 Nucleus 1 0.500231643923819 1 0.999536712152362 hm5C_site_24687 DeepMRMD:1;iRNA_m5C:0.999536712152362 24688 chr4 103500169 103500169 1 + G A HNSC 103500160 + 103500140 103500180 41 CTGGCAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC CTGGCAGCTTCACAAGGCGCCTGGAACCCATGGTATCAGAC < 41bp 1 0.623743836411979 1 0.302279770374298 experiment 0.752512327176043 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103500160 chr4:103500169 nonsynonymous SNV 0.805 4 30 hm5C_associated_SNPs_23888 0 0 1 0 1 Ribosome 1 0.500231644251605 1 0.99953671149679 hm5C_site_24688 DeepMRMD:1;iRNA_m5C:0.99953671149679 24689 chr7 44100510 44100510 1 + G C HNSC 44100530 + 44100510 44100550 41 GAGTGAGGCTGAGGGCACATCTTGCCCTTCCCCTCTCAGAC CAGTGAGGCTGAGGGCACATCTTGCCCTTCCCCTCTCAGAC < 41bp 1 0.422700403077104 1 0.495849370956421 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DBNL ENSG00000136279 CDS Human protein_coding chr7:44100530 chr7:44100510 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_23889 0 0 1 0 0 Ribosome 1 0.500231643920535 1 0.999536712158929 hm5C_site_24689 DeepMRMD:1;iRNA_m5C:0.999536712158929 24690 chr12 50822793 50822793 1 + A G HNSC 50822799 + 50822779 50822819 41 TGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTG TGAAACCACAAGAAGTACTACAGGCATTGAAGAATCAACTG < 41bp 1 0.483536181517206 1 0.308820068836212 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LARP4 ENSG00000161813 CDS Human protein_coding chr12:50822799 chr12:50822793 nonsynonymous SNV 0.928 0 15 hm5C_associated_SNPs_23890 0 0 1 0 2 Nucleus 1 0.500231732591378 1 0.999536534817244 hm5C_site_24690 DeepMRMD:1;iRNA_m5C:0.999536534817244 24691 chr22 29684679 29684679 1 + G C HNSC 29684675 + 29684655 29684695 41 TTTCCGGACCAGGAGAGAACCGGAGCATGAGTGGCCCTGAT TTTCCGGACCAGGAGAGAACCGGACCATGAGTGGCCCTGAT < 41bp 1 0.636710209563778 1 0.912412166595459 experiment 0.726579580872444 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29684675 chr22:29684679 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_23891 0 0 1 0 2 Cytosol 1 0.50026636263753 0.175175666809082 0.999467274724941 hm5C_site_24691 DeepMRMD:0.175175666809082;iRNA_m5C:0.999467274724941 24692 chr9 125154751 125154751 1 + C A HNSC 125154756 + 125154736 125154776 41 CAAGACCTGTCCCTACGTTTCCTTCCGTGTGCCGGATGCCA CAAGACCTGTCCCTAAGTTTCCTTCCGTGTGCCGGATGCCA < 41bp 1 0.0180190222622562 1 0.0303155481815338 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125154756 chr9:125154751 stopgain 0.979 1 16 hm5C_associated_SNPs_23892 0 0 1 0 0 nucleolus 1 0.500231643925344 1 0.999536712149311 hm5C_site_24692 DeepMRMD:1;iRNA_m5C:0.999536712149311 24693 chr7 73969543 73969543 1 + G T HNSC 73969540 + 73969520 73969560 41 GAGGGAGTCAAAGAGCCCATCATGGATAGTCAAGGTACCCA GAGGGAGTCAAAGAGCCCATCATTGATAGTCAAGGTACCCA < 41bp 1 0.118342444264372 1 0.0689175128936768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73969540 chr7:73969543 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_23894 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24693 DeepMRMD:1;iRNA_m5C:0.999536712157815 24694 chr5 131953939 131953939 1 + A T HNSC 131953938 + 131953918 131953958 41 GATGATTGTTATGAGGACAACAGAACTTGTGAACAAGGATC GATGATTGTTATGAGGACAACTGAACTTGTGAACAAGGATC < 41bp 1 0.495094395703063 1 0.382280707359314 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131953938 chr5:131953939 synonymous SNV . 0 22 hm5C_associated_SNPs_23895 0 0 1 0 1 Cytosol 1 0.500231645283614 1 0.999536709432772 hm5C_site_24694 DeepMRMD:1;iRNA_m5C:0.999536709432772 24695 chr2 99179952 99179952 1 + C T HNSC 99179968 + 99179948 99179988 41 TACCCGCTGCTGACCACTCTCACCGACTGCGTGGCCATGAT TACCTGCTGCTGACCACTCTCACCGACTGCGTGGCCATGAT < 41bp 1 0.661275919576841 1 0.318508148193359 experiment 0.677448160846318 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99179968 chr2:99179952 nonsynonymous SNV 0.950 4 5 hm5C_associated_SNPs_23896 0 0 1 0 1 Ribosome 1 0.50001824724006 1 0.999963505519879 hm5C_site_24695 DeepMRMD:1;iRNA_m5C:0.999963505519879 24696 chr2 97008569 97008569 1 + G C HNSC 97008573 + 97008553 97008593 41 TAAACAGAAAGACACCGAACCAACCAACTTTAAAGTAAGAA TAAACAGAAAGACACCCAACCAACCAACTTTAAAGTAAGAA < 41bp 1 0.0597752906179768 1 0.237188935279846 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCAPH ENSG00000121152 CDS Human protein_coding chr2:97008573 chr2:97008569 nonsynonymous SNV 0.671 4 17 hm5C_associated_SNPs_23897 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24696 DeepMRMD:1;iRNA_m5C:0.999536712157815 24697 chr4 20568976 20568976 1 + C T HNSC 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTGATTTTTACCGATGCACCTGTCCATATGG < 41bp 1 0.111701796976624 1 0.47745344042778 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568976 synonymous SNV . 0 15 hm5C_associated_SNPs_23898 0 0 1 0 2 Ribosome 1 0.50023164324238 1 0.99953671351524 hm5C_site_24697 DeepMRMD:1;iRNA_m5C:0.99953671351524 24698 chr4 20568976 20568976 1 + C T HNSC 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTGATTTTTACCGATGCACCTGTCCATATGGT < 41bp 1 0.145167993666608 1 0.590771079063416 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568976 synonymous SNV . 0 14 hm5C_associated_SNPs_23899 0 0 1 0 2 Ribosome 1 0.500232141844709 0.818457841873168 0.999535716310583 hm5C_site_24698 DeepMRMD:0.818457841873168;iRNA_m5C:0.999535716310583 24699 chr1 27089589 27089589 1 + C T HNSC 27089608 + 27089588 27089628 41 ACCTTATGGCACACTCCCTCCAGGGAGGATGAGTCACGCCT ATCTTATGGCACACTCCCTCCAGGGAGGATGAGTCACGCCT < 41bp 1 0.632103773045265 1 0.921338796615601 experiment 0.73579245390947 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27089608 chr1:27089589 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_23900 0 0 1 0 0 Nucleus 1 0.500231644771632 0.157322406768798 0.999536710456735 hm5C_site_24699 DeepMRMD:0.157322406768798;iRNA_m5C:0.999536710456735 24700 chr4 1017629 1017629 1 + C T HNSC 1017627 + 1017607 1017647 41 CGACCGCGCTTCACACAGCCCTCCAAGATGAGGCGCCGGGT CGACCGCGCTTCACACAGCCCTTCAAGATGAGGCGCCGGGT < 41bp 1 0.42905159040726 1 0.548427700996399 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1017627 chr4:1017629 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_23901 0 0 1 0 1 Ribosome 1 0.500231643924245 0.903144598007202 0.999536712151511 hm5C_site_24700 DeepMRMD:0.903144598007202;iRNA_m5C:0.999536712151511 24701 chr4 87691069 87691069 1 + G C HNSC 87691057 + 87691037 87691077 41 GCTCTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG GCTCTTTCCTGGACAGCCAGCAGCAGAAAGTGCAAAAATTG < 41bp 1 0.370308388492594 1 0.639880657196045 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691057 chr4:87691069 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_23902 0 0 0 0 1 Ribosome 1 0.500231643921008 0.72023868560791 0.999536712157984 hm5C_site_24701 DeepMRMD:0.72023868560791;iRNA_m5C:0.999536712157984 24702 chr4 87691069 87691069 1 + G C HNSC 87691060 + 87691040 87691080 41 CTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATG CTTTCCTGGACAGCCAGCAGCAGAAAGTGCAAAAATTGATG < 41bp 1 0.275165653333273 1 0.471859335899353 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691060 chr4:87691069 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_23903 0 0 0 0 1 Ribosome 1 0.500231652244619 1 0.999536695510762 hm5C_site_24702 DeepMRMD:1;iRNA_m5C:0.999536695510762 24703 chr8 144732947 144732947 1 + A T HNSC 144732951 + 144732931 144732971 41 GGGAAGGCATTCCGTCATCGCTCAGACCTTATTGAACACCA GGGAAGGCATTCCGTCTTCGCTCAGACCTTATTGAACACCA < 41bp 1 0.586550857738404 1 0.284761607646942 experiment 0.826898284523192 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF623 ENSG00000183309 CDS Human protein_coding chr8:144732951 chr8:144732947 nonsynonymous SNV 0.000 0 17 hm5C_associated_SNPs_23904 0 0 1 0 0 cytosol 1 0.500231805965908 1 0.999536388068184 hm5C_site_24703 DeepMRMD:1;iRNA_m5C:0.999536388068184 24704 chr3 120315376 120315376 1 + G A HNSC 120315381 + 120315361 120315401 41 ACGATCCCAACCGCCGAGGGCTCATCGTGAGTGTGGGGCCT ACGATCCCAACCGCCAAGGGCTCATCGTGAGTGTGGGGCCT < 41bp 1 0.465998803774395 1 0.064334511756897 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB4 ENSG00000065518 CDS Human protein_coding chr3:120315381 chr3:120315376 nonsynonymous SNV 0.025 0 16 hm5C_associated_SNPs_23905 0 0 1 0 1 Ribosome 1 0.500231640646014 1 0.999536718707971 hm5C_site_24704 DeepMRMD:1;iRNA_m5C:0.999536718707971 24705 chr12 112940025 112940025 1 + T C HNSC 112940029 + 112940009 112940049 41 GTGGAGATCAGAGCCCTCTCCCGCCTTGTACTCCAACGCCA GTGGAGATCAGAGCCCCCTCCCGCCTTGTACTCCAACGCCA < 41bp 1 0.293297739043281 1 0.224377363920212 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112940029 chr12:112940025 synonymous SNV . 0 17 hm5C_associated_SNPs_23906 0 0 1 0 1 Ribosome 1 0.500231651169517 1 0.999536697660967 hm5C_site_24705 DeepMRMD:1;iRNA_m5C:0.999536697660967 24706 chr12 112940027 112940027 1 + T C HNSC 112940029 + 112940009 112940049 41 GTGGAGATCAGAGCCCTCTCCCGCCTTGTACTCCAACGCCA GTGGAGATCAGAGCCCTCCCCCGCCTTGTACTCCAACGCCA < 41bp 1 0.348380278705815 1 0.222508370876312 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112940029 chr12:112940027 nonsynonymous SNV 0.997 2 19 hm5C_associated_SNPs_23907 0 0 1 0 1 Ribosome 1 0.500231643930743 1 0.999536712138513 hm5C_site_24706 DeepMRMD:1;iRNA_m5C:0.999536712138513 24707 chr9 131247076 131247076 1 + A T HNSC 131247090 + 131247070 131247110 41 AAAGAGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCG AAAGAGTGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCG < 41bp 1 0.126623052455193 1 0.142958670854568 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247090 chr9:131247076 nonsynonymous SNV 0.557 1 7 hm5C_associated_SNPs_23908 0 0 1 0 2 Cytosol 1 0.500231643920997 1 0.999536712158007 hm5C_site_24707 DeepMRMD:1;iRNA_m5C:0.999536712158007 24708 chr9 131247076 131247076 1 + A T HNSC 131247094 + 131247074 131247114 41 AGAGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCC AGTGCTTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCC < 41bp 1 0.431215886548302 1 0.743545830249786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247094 chr9:131247076 nonsynonymous SNV 0.557 1 3 hm5C_associated_SNPs_23909 0 0 1 0 2 Cytosol 1 0.500231643921034 0.512908339500428 0.999536712157931 hm5C_site_24708 DeepMRMD:0.512908339500428;iRNA_m5C:0.999536712157931 24709 chr16 85689393 85689393 1 + G A HNSC 85689403 + 85689383 85689423 41 CCCCACCCCCGGCTCCCTGCCCCCACTGCACCCATCAGCGA CCCCACCCCCAGCTCCCTGCCCCCACTGCACCCATCAGCGA < 41bp 1 0.488976230768856 1 0.124807596206665 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85689403 chr16:85689393 nonsynonymous SNV 0.465 1 11 hm5C_associated_SNPs_23910 0 0 1 0 1 Cytosol 1 0.500231643921073 1 0.999536712157854 hm5C_site_24709 DeepMRMD:1;iRNA_m5C:0.999536712157854 24710 chr17 41154796 41154796 1 + G C HNSC 41154779 + 41154759 41154799 41 ACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGA ACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAACAGA < 41bp 1 0.518860876987435 1 0.37147980928421 experiment 0.96227824602513 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154779 chr17:41154796 nonsynonymous SNV 0.986 2 38 hm5C_associated_SNPs_23911 0 0 1 0 1 Cytosol 1 0.500231643921073 1 0.999536712157854 hm5C_site_24710 DeepMRMD:1;iRNA_m5C:0.999536712157854 24711 chr1 78001608 78001608 1 + G A HNSC 78001588 + 78001568 78001608 41 TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCG TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCA < 41bp 1 0.149549389623042 1 0.0533345341682434 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001588 chr1:78001608 nonsynonymous SNV 0.522 0 41 hm5C_associated_SNPs_23912 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24711 DeepMRMD:1;iRNA_m5C:0.999536712157815 24712 chr1 78001608 78001608 1 + G A HNSC 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCCAAAGGAGCCAGAGCAGCCTGCCTGTGGACGACAC < 41bp 1 0.44334197526132 1 0.383168041706085 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001608 nonsynonymous SNV 0.522 0 17 hm5C_associated_SNPs_23913 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24712 DeepMRMD:1;iRNA_m5C:0.999536712157815 24713 chr1 109806290 109806290 1 + C G HNSC 109806280 + 109806260 109806300 41 GCAGCAGCCTGGTGGCCTGGCATGGCCTCTCGCTGCCCATC GCAGCAGCCTGGTGGCCTGGCATGGCCTCTGGCTGCCCATC < 41bp 1 0.264761841629817 1 0.24673068523407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806280 chr1:109806290 nonsynonymous SNV 0.947 0 31 hm5C_associated_SNPs_23914 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164369943 1 0.999536712601141 hm5C_site_24713 DeepMRMD:1;iRNA_m5C:0.999536712601141 24714 chr3 17056235 17056235 1 + C T HNSC 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG GCCTTTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG < 41bp 1 0.531010870562207 1 0.143379151821136 experiment 0.937978258875586 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056235 synonymous SNV . 0 5 hm5C_associated_SNPs_23915 0 0 1 0 1 nucleus 1 0.500225563375701 1 0.999548873248598 hm5C_site_24714 DeepMRMD:1;iRNA_m5C:0.999548873248598 24715 chr1 168014243 168014243 1 + C G HNSC 168014224 + 168014204 168014244 41 TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATGT < 41bp 1 0.409804845170957 1 0.468249619007111 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168014224 chr1:168014243 nonsynonymous SNV 0.224 0 40 hm5C_associated_SNPs_23916 0 0 1 0 0 Cytosol 1 0.500231643899051 1 0.999536712201899 hm5C_site_24715 DeepMRMD:1;iRNA_m5C:0.999536712201899 24716 chr1 22329569 22329569 1 + C T HNSC 22329556 + 22329536 22329576 41 CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGTTGGCCCT < 41bp 1 0.197618189884138 1 0.212063163518906 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329556 chr1:22329569 synonymous SNV . 0 34 hm5C_associated_SNPs_23917 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24716 DeepMRMD:1;iRNA_m5C:0.999536712157815 24717 chr1 22329569 22329569 1 + C T HNSC 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCCATGGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCA < 41bp 1 0.194187694155942 1 0.0722876191139221 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329569 synonymous SNV . 0 30 hm5C_associated_SNPs_23918 0 0 0 0 2 Endoplasmic reticulum 1 0.500231291041922 1 0.999537417916156 hm5C_site_24717 DeepMRMD:1;iRNA_m5C:0.999537417916156 24718 chr1 22329569 22329569 1 + C T HNSC 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCCATGGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCAG < 41bp 1 0.228634454959457 1 0.16746997833252 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329569 synonymous SNV . 0 29 hm5C_associated_SNPs_23919 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643812391 1 0.999536712375218 hm5C_site_24718 DeepMRMD:1;iRNA_m5C:0.999536712375218 24719 chr1 22329569 22329569 1 + C T HNSC 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CCATGGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCAGG < 41bp 1 0.0529055000993454 1 0.204518496990204 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329569 synonymous SNV . 0 28 hm5C_associated_SNPs_23920 0 0 0 0 2 Endoplasmic reticulum 1 0.500075454583849 1 0.999849090832302 hm5C_site_24719 DeepMRMD:1;iRNA_m5C:0.999849090832302 24720 chr1 22329569 22329569 1 + C T HNSC 22329566 + 22329546 22329586 41 GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG GGTGAGGATGCGGTCCCCTACAGTTGGCCCTGGCAGGTAAG < 41bp 1 0.364072370414285 1 0.0891200304031372 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329566 chr1:22329569 synonymous SNV . 0 24 hm5C_associated_SNPs_23922 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24720 DeepMRMD:1;iRNA_m5C:0.999536712157815 24721 chr1 22329569 22329569 1 + C T HNSC 22329573 + 22329553 22329593 41 ATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATA ATGCGGTCCCCTACAGTTGGCCCTGGCAGGTAAGAGCAATA < 41bp 1 0.102084478927461 1 0.0402600765228271 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329573 chr1:22329569 synonymous SNV . 0 17 hm5C_associated_SNPs_23923 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24721 DeepMRMD:1;iRNA_m5C:0.999536712157815 24722 chr1 22329569 22329569 1 + C T HNSC 22329574 + 22329554 22329594 41 TGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAG TGCGGTCCCCTACAGTTGGCCCTGGCAGGTAAGAGCAATAG < 41bp 1 0.0912500920521208 1 0.0463947951793671 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329574 chr1:22329569 synonymous SNV . 0 16 hm5C_associated_SNPs_23924 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921145 1 0.99953671215771 hm5C_site_24722 DeepMRMD:1;iRNA_m5C:0.99953671215771 24723 chr1 22329569 22329569 1 + C T HNSC 22329575 + 22329555 22329595 41 GCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGC GCGGTCCCCTACAGTTGGCCCTGGCAGGTAAGAGCAATAGC < 41bp 1 0.274210110435918 1 0.0780594646930695 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329575 chr1:22329569 synonymous SNV . 0 15 hm5C_associated_SNPs_23925 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24723 DeepMRMD:1;iRNA_m5C:0.999536712157815 24724 chr1 22329569 22329569 1 + C T HNSC 22329579 + 22329559 22329599 41 TCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGCAGCT TCCCCTACAGTTGGCCCTGGCAGGTAAGAGCAATAGCAGCT < 41bp 1 0.630487229268947 1 0.554352521896362 experiment 0.739025541462106 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329579 chr1:22329569 synonymous SNV . 0 11 hm5C_associated_SNPs_23926 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643913127 0.891294956207276 0.999536712173746 hm5C_site_24724 DeepMRMD:0.891294956207276;iRNA_m5C:0.999536712173746 24725 chr7 45662289 45662289 1 + G C HNSC 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGCAGCTG < 41bp 1 0.447613777415007 1 0.584006726741791 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662289 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_23927 0 0 1 0 2 Nucleus 1 0.500231643920052 0.831986546516418 0.999536712159895 hm5C_site_24725 DeepMRMD:0.831986546516418;iRNA_m5C:0.999536712159895 24726 chr5 167627019 167627019 1 + G T HNSC 167627037 + 167627017 167627057 41 CTGTCGAGGGGCATCTCTTCCAGAAGTCATTCCAGGCTTCT CTTTCGAGGGGCATCTCTTCCAGAAGTCATTCCAGGCTTCT < 41bp 1 0.595895568870968 1 0.655422806739807 experiment 0.808208862258064 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TENM2 ENSG00000145934 CDS Human protein_coding chr5:167627037 chr5:167627019 nonsynonymous SNV 0.105 5 3 hm5C_associated_SNPs_23928 0 0 0 0 0 exosome 1 0.500229205070338 0.689154386520386 0.999541589859325 hm5C_site_24726 DeepMRMD:0.689154386520386;iRNA_m5C:0.999541589859325 24727 chr14 71428976 71428976 1 + C A HNSC 71428988 + 71428968 71429008 41 TCTGAGTTCATCCGAGAGGCCACACCCCCAGTTGGTTGCAG TCTGAGTTAATCCGAGAGGCCACACCCCCAGTTGGTTGCAG < 41bp 1 0.137501313367373 1 0.0677918195724487 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71428988 chr14:71428976 nonsynonymous SNV 0.999 3 9 hm5C_associated_SNPs_23929 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920025 1 0.99953671215995 hm5C_site_24727 DeepMRMD:1;iRNA_m5C:0.99953671215995 24728 chr7 133682292 133682292 1 + G C HNSC 133682272 + 133682252 133682292 41 TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAG TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAC < 41bp 1 0.219498333202051 1 0.0813802182674408 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682272 chr7:133682292 nonsynonymous SNV 0.985 0 41 hm5C_associated_SNPs_23930 0 0 1 0 2 Nucleus 1 0.500231654662931 1 0.999536690674137 hm5C_site_24728 DeepMRMD:1;iRNA_m5C:0.999536690674137 24729 chr7 133682292 133682292 1 + G C HNSC 133682278 + 133682258 133682298 41 TCAAGACAGCCACACGAACACGGATCTCCCCCCAGTGTCAG TCAAGACAGCCACACGAACACGGATCTCCCCCCACTGTCAG < 41bp 1 0.447885159728138 1 0.374985665082932 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682278 chr7:133682292 nonsynonymous SNV 0.985 0 35 hm5C_associated_SNPs_23932 0 0 1 0 2 Nucleus 1 0.500231643920956 1 0.999536712158088 hm5C_site_24729 DeepMRMD:1;iRNA_m5C:0.999536712158088 24730 chr13 111111187 111111187 1 + C A HNSC 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACACAAG < 41bp 1 0.258953797415789 1 0.639045834541321 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111187 nonsynonymous SNV 0.987 2 37 hm5C_associated_SNPs_23933 0 0 0 0 2 Cytosol 1 0.500231643921092 0.721908330917358 0.999536712157815 hm5C_site_24730 DeepMRMD:0.721908330917358;iRNA_m5C:0.999536712157815 24731 chr13 111111187 111111187 1 + C A HNSC 111111172 + 111111152 111111192 41 CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAGG CGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACACAAGG < 41bp 1 0.662981157310035 1 0.902889370918274 experiment 0.67403768537993 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111172 chr13:111111187 nonsynonymous SNV 0.987 2 36 hm5C_associated_SNPs_23934 0 0 0 0 2 Cytosol 1 0.500231643558752 0.194221258163452 0.999536712882496 hm5C_site_24731 DeepMRMD:0.194221258163452;iRNA_m5C:0.999536712882496 24732 chr19 18232697 18232697 1 + G A HNSC 18232699 + 18232679 18232719 41 TAGTCCTCGGAATTTCTCGGCTGCCTCTGCCCTAAATTTCC TAGTCCTCGGAATTTCTCAGCTGCCTCTGCCCTAAATTTCC < 41bp 1 0.0957364974787394 1 0.147381156682968 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST3 ENSG00000099308 CDS Human protein_coding chr19:18232699 chr19:18232697 synonymous SNV . 0 19 hm5C_associated_SNPs_23935 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24732 DeepMRMD:1;iRNA_m5C:0.999536712157815 24733 chr11 74329716 74329716 1 + G A HNSC 74329711 + 74329691 74329731 41 GCCAACAATGAGCTGACCACCAATGGTCATGGCCCACCTGC GCCAACAATGAGCTGACCACCAATGATCATGGCCCACCTGC < 41bp 1 0.578955619873307 1 0.31966632604599 experiment 0.842088760253385 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329711 chr11:74329716 nonsynonymous SNV 0.963 4 26 hm5C_associated_SNPs_23936 0 0 1 0 0 Nucleus 1 0.500231644702479 1 0.999536710595042 hm5C_site_24733 DeepMRMD:1;iRNA_m5C:0.999536710595042 24734 chr11 74329716 74329716 1 + G A HNSC 74329725 + 74329705 74329745 41 GACCACCAATGGTCATGGCCCACCTGCATCCAAGCAGGTTT GACCACCAATGATCATGGCCCACCTGCATCCAAGCAGGTTT < 41bp 1 0.376364159749546 1 0.0269297957420349 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329725 chr11:74329716 nonsynonymous SNV 0.963 4 12 hm5C_associated_SNPs_23937 0 0 1 0 0 Nucleus 1 0.500231643923068 1 0.999536712153864 hm5C_site_24734 DeepMRMD:1;iRNA_m5C:0.999536712153864 24735 chr11 74329716 74329716 1 + G A HNSC 74329727 + 74329707 74329747 41 CCACCAATGGTCATGGCCCACCTGCATCCAAGCAGGTTTCC CCACCAATGATCATGGCCCACCTGCATCCAAGCAGGTTTCC < 41bp 1 0.100975286612086 1 0.0587345659732819 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329727 chr11:74329716 nonsynonymous SNV 0.963 4 10 hm5C_associated_SNPs_23938 0 0 1 0 0 Nucleus 1 0.500231643904154 1 0.999536712191692 hm5C_site_24735 DeepMRMD:1;iRNA_m5C:0.999536712191692 24736 chr11 74329716 74329716 1 + G A HNSC 74329728 + 74329708 74329748 41 CACCAATGGTCATGGCCCACCTGCATCCAAGCAGGTTTCCC CACCAATGATCATGGCCCACCTGCATCCAAGCAGGTTTCCC < 41bp 1 0.693641598852596 1 0.355924665927887 experiment 0.612716802294808 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329728 chr11:74329716 nonsynonymous SNV 0.963 4 9 hm5C_associated_SNPs_23939 0 0 1 0 0 Nucleus 1 0.500231269405679 1 0.999537461188642 hm5C_site_24736 DeepMRMD:1;iRNA_m5C:0.999537461188642 24737 chr11 74329716 74329716 1 + G A HNSC 74329731 + 74329711 74329751 41 CAATGGTCATGGCCCACCTGCATCCAAGCAGGTTTCCCAGC CAATGATCATGGCCCACCTGCATCCAAGCAGGTTTCCCAGC < 41bp 1 0.139079533362502 1 0.284024238586426 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329731 chr11:74329716 nonsynonymous SNV 0.963 4 6 hm5C_associated_SNPs_23940 0 0 1 0 0 Nucleus 1 0.50023164391737 1 0.999536712165261 hm5C_site_24737 DeepMRMD:1;iRNA_m5C:0.999536712165261 24738 chr11 74329716 74329716 1 + G A HNSC 74329734 + 74329714 74329754 41 TGGTCATGGCCCACCTGCATCCAAGCAGGTTTCCCAGCAGC TGATCATGGCCCACCTGCATCCAAGCAGGTTTCCCAGCAGC < 41bp 1 0.263127861436098 1 0.340900123119354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329734 chr11:74329716 nonsynonymous SNV 0.963 4 3 hm5C_associated_SNPs_23941 0 0 1 0 0 Nucleus 1 0.500231248624802 1 0.999537502750397 hm5C_site_24738 DeepMRMD:1;iRNA_m5C:0.999537502750397 24739 chr3 37090050 37090050 1 + G C HNSC 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATCTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA < 41bp 1 0.384436404097982 1 0.0526585876941681 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090050 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_23942 0 0 1 0 2 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_24739 DeepMRMD:1;iRNA_m5C:0.99953671215782 24740 chr17 65909123 65909123 1 + A G HNSC 65909116 + 65909096 65909136 41 CTCGTTCAGGTACAGCTCTGCCATCCTATAGAAAATTTGTT CTCGTTCAGGTACAGCTCTGCCATCCTGTAGAAAATTTGTT < 41bp 1 0.00568259187170913 1 0.0197587907314301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65909116 chr17:65909123 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_23943 0 0 1 0 0 Cytosol 1 0.500231643742452 1 0.999536712515096 hm5C_site_24740 DeepMRMD:1;iRNA_m5C:0.999536712515096 24741 chr8 145065441 145065441 1 + C T HNSC 145065439 + 145065419 145065459 41 TCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGG TCTGGGGACAACTATCCTCCCCTCAACCCTGGATATCCGGG < 41bp 1 0.16803743103628 1 0.0836500823497772 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065439 chr8:145065441 nonsynonymous SNV 0.738 0 23 hm5C_associated_SNPs_23944 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24741 DeepMRMD:1;iRNA_m5C:0.999536712157815 24742 chr9 135073644 135073644 1 + G A HNSC 135073628 + 135073608 135073648 41 AACGGGCGCACCTGGCAGCCCTACCAGTTCTACGCCGAGGA AACGGGCGCACCTGGCAGCCCTACCAGTTCTACGCCAAGGA < 41bp 1 0.156068463740724 1 0.0816235542297363 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135073628 chr9:135073644 nonsynonymous SNV 0.991 1 37 hm5C_associated_SNPs_23945 0 0 0 0 0 exosome 1 0.500231659010743 1 0.999536681978515 hm5C_site_24742 DeepMRMD:1;iRNA_m5C:0.999536681978515 24743 chr7 99159525 99159525 1 + C T HNSC 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTCCTTAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC < 41bp 1 0.202122347461825 1 0.0691644549369812 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159525 stopgain 1.000 0 11 hm5C_associated_SNPs_23946 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24743 DeepMRMD:1;iRNA_m5C:0.999536712157815 24744 chr20 42089355 42089355 1 + G C HNSC 42089358 + 42089338 42089378 41 TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCG TCCAGTTCCAGGTCGCGCAGCAAAGGTCGATCACGTTCTCG < 41bp 1 0.48026491751267 1 0.393512934446335 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089358 chr20:42089355 synonymous SNV . 0 18 hm5C_associated_SNPs_23947 0 0 1 0 1 Nucleus 1 0.500231586856266 1 0.999536826287468 hm5C_site_24744 DeepMRMD:1;iRNA_m5C:0.999536826287468 24745 chr17 66039309 66039309 1 + C T HNSC 66039310 + 66039290 66039330 41 TGCTGTTGAGCAGATTCTTCCTACCTTAGTTCGGCTCCTGC TGCTGTTGAGCAGATTCTTTCTACCTTAGTTCGGCTCCTGC < 41bp 1 0.434812822334155 1 0.330330371856689 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66039310 chr17:66039309 nonsynonymous SNV 0.995 3 20 hm5C_associated_SNPs_23948 0 0 1 0 0 Cytosol 1 0.500231640551243 1 0.999536718897515 hm5C_site_24745 DeepMRMD:1;iRNA_m5C:0.999536718897515 24746 chr1 161326611 161326611 1 + G A HNSC 161326622 + 161326602 161326642 41 ATCATACCTGGAATGGGATCCGACACTTGGTAAGTTAATTC ATCATACCTAGAATGGGATCCGACACTTGGTAAGTTAATTC < 41bp 1 0.522729711778792 1 0.382539927959442 experiment 0.954540576442416 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHC ENSG00000143252 CDS Human protein_coding chr1:161326622 chr1:161326611 stopgain 0.976 1 10 hm5C_associated_SNPs_23949 0 0 1 0 1 Ribosome 1 0.500231642376252 1 0.999536715247495 hm5C_site_24746 DeepMRMD:1;iRNA_m5C:0.999536715247495 24747 chr7 44733439 44733439 1 + G T HNSC 44733426 + 44733406 44733446 41 GCTACATGTTCCTTGCAGATCGGCTTCACCACCGACCCTCG GCTACATGTTCCTTGCAGATCGGCTTCACCACCTACCCTCG < 41bp 1 0.645942127875078 1 0.373750865459442 experiment 0.708115744249845 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44733426 chr7:44733439 nonsynonymous SNV 0.995 5 34 hm5C_associated_SNPs_23951 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24747 DeepMRMD:1;iRNA_m5C:0.999536712157815 24748 chr7 149426299 149426299 1 + G A HNSC 149426306 + 149426286 149426326 41 GGCTGAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG GGCTGAGGCCTGCAAGTCAGCCGTCTCGGGCAGGGTAGGGG < 41bp 1 0.0316299710458575 1 0.267729908227921 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149426306 chr7:149426299 nonsynonymous SNV 0.002 1 14 hm5C_associated_SNPs_23952 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_24748 DeepMRMD:1;iRNA_m5C:0.999536712157815 24749 chr16 705335 705335 1 + C T HNSC 705347 + 705327 705367 41 GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT GCAGTGTGTGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT < 41bp 1 0.49621745615477 1 0.401052474975586 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:705347 chr16:705335 nonsynonymous SNV 0.922 3 9 hm5C_associated_SNPs_23953 0 0 1 0 1 Cytosol 1 0.50023166114592 1 0.99953667770816 hm5C_site_24749 DeepMRMD:1;iRNA_m5C:0.99953667770816 24750 chr17 7592167 7592167 1 + A G HNSC 7592180 + 7592160 7592200 41 AGGAGCTACGGGAGGGGGACCCAGTTTCTCTCTCCACTCCC AGGAGCTGCGGGAGGGGGACCCAGTTTCTCTCTCCACTCCC < 41bp 1 0.422482763409881 1 0.451239913702011 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7592180 chr17:7592167 synonymous SNV . 0 8 hm5C_associated_SNPs_23954 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24750 DeepMRMD:1;iRNA_m5C:0.999536712157815 24751 chr6 26446172 26446172 1 + C T HNSC 26446158 + 26446138 26446178 41 TCTGGTGGGGGTGTATCCTGCATCATCAGAAATTCCCTCCT TCTGGTGGGGGTGTATCCTGCATCATCAGAAATTTCCTCCT < 41bp 1 0.683478647867921 1 0.329062521457672 experiment 0.633042704264157 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26446158 chr6:26446172 nonsynonymous SNV 0.042 2 35 hm5C_associated_SNPs_23955 0 0 0 0 1 Endoplasmic reticulum 1 0.500232080784243 1 0.999535838431513 hm5C_site_24751 DeepMRMD:1;iRNA_m5C:0.999535838431513 24752 chr22 39826098 39826098 1 + C T HNSC 39826113 + 39826093 39826133 41 CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA CTCTTTCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA < 41bp 1 0.105096582739703 1 0.17353230714798 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39826113 chr22:39826098 synonymous SNV . 0 6 hm5C_associated_SNPs_23956 0 0 1 0 1 Cytosol 1 0.500231689805479 1 0.999536620389041 hm5C_site_24752 DeepMRMD:1;iRNA_m5C:0.999536620389041 24753 chr6 33633651 33633651 1 + C A HNSC 33633637 + 33633617 33633657 41 TCATCCAGCTGCTGGAAGACCTGGTGTTCTTTGTCAGCGAT TCATCCAGCTGCTGGAAGACCTGGTGTTCTTTGTAAGCGAT < 41bp 1 0.420845708448222 1 0.196490347385406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33633637 chr6:33633651 synonymous SNV . 0 35 hm5C_associated_SNPs_23957 0 0 1 0 1 Endoplasmic reticulum 1 0.500230381348003 1 0.999539237303994 hm5C_site_24753 DeepMRMD:1;iRNA_m5C:0.999539237303994 24754 chr11 9462025 9462025 1 + G A HNSC 9462007 + 9461987 9462027 41 ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATGAT ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATAAT < 41bp 1 0.609318835995741 1 0.454091876745224 experiment 0.781362328008518 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462007 chr11:9462025 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_23958 0 0 1 0 1 Cytosol 1 0.500231643924228 1 0.999536712151544 hm5C_site_24754 DeepMRMD:1;iRNA_m5C:0.999536712151544 24755 chr11 9462019 9462019 1 + G A HNSC 9462007 + 9461987 9462027 41 ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATGAT ATTATGACTTGGCAGAGGAACTGGGGAGTGATAAAGATGAT < 41bp 1 0.619516413979638 1 0.470552891492844 experiment 0.760967172040723 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462007 chr11:9462019 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_23959 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_24755 DeepMRMD:1;iRNA_m5C:0.999536712157815 24756 chr1 151006632 151006632 1 + C G HNSC 151006621 + 151006601 151006641 41 AGTGCCCTCTAGATCAGGGGCTGCCTAAACTCTCTGCTGAG AGTGCCCTCTAGATCAGGGGCTGCCTAAACTGTCTGCTGAG < 41bp 1 0.360575314704538 1 0.11042594909668 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:151006621 chr1:151006632 synonymous SNV . 0 32 hm5C_associated_SNPs_23960 0 0 1 0 0 chromatin 1 0.500231637464944 1 0.999536725070112 hm5C_site_24756 DeepMRMD:1;iRNA_m5C:0.999536725070112 24757 chr15 77241521 77241521 1 + C A HNSC 77241508 + 77241488 77241528 41 CTTGTTTCTCACCAGTGAAGCCACAGATTATGGCAGACAGC CTTGTTTCTCACCAGTGAAGCCACAGATTATGGAAGACAGC < 41bp 1 0.40084015121176 1 0.142463594675064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RCN2 ENSG00000117906 CDS Human protein_coding chr15:77241508 chr15:77241521 synonymous SNV . 0 34 hm5C_associated_SNPs_23961 0 0 1 0 0 Ribosome 1 0.500231696632043 1 0.999536606735914 hm5C_site_24757 DeepMRMD:1;iRNA_m5C:0.999536606735914 24758 chr1 228463619 228463619 1 + G A HNSC 228463603 + 228463583 228463623 41 GCCCTGGCGCCGGGAAAGAACGTGGAGATCCACGCCGAGGG GCCCTGGCGCCGGGAAAGAACGTGGAGATCCACGCCAAGGG < 41bp 1 0.248436973358909 1 0.750953435897827 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228463603 chr1:228463619 nonsynonymous SNV 0.036 2 37 hm5C_associated_SNPs_23962 0 0 0 0 0 Ribosome 1 0.500231643921142 0.498093128204346 0.999536712157716 hm5C_site_24758 DeepMRMD:0.498093128204346;iRNA_m5C:0.999536712157716 24759 chr6 30547717 30547717 1 + G A HNSC 30547729 + 30547709 30547749 41 CCGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG CCGTATCTAAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG < 41bp 1 0.0548648930325445 1 0.127831727266312 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547729 chr6:30547717 nonsynonymous SNV 0.979 0 9 hm5C_associated_SNPs_23963 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921772 1 0.999536712156457 hm5C_site_24759 DeepMRMD:1;iRNA_m5C:0.999536712156457 24760 chr6 30547717 30547717 1 + G A HNSC 30547735 + 30547715 30547755 41 CTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAGGGAAAG CTAAGGAACAGCAGCCTGCACTCAAGGGCAAAAAGGGAAAG < 41bp 1 0.5601424021401 1 0.328448534011841 experiment 0.8797151957198 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547735 chr6:30547717 nonsynonymous SNV 0.979 0 3 hm5C_associated_SNPs_23964 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24760 DeepMRMD:1;iRNA_m5C:0.999536712157815 24761 chr5 176709482 176709482 1 + A C HNSC 176709496 + 176709476 176709516 41 TGAATGAGTATGTGGGTGAGCTTATAGATGAAGAAGAATGC TGAATGCGTATGTGGGTGAGCTTATAGATGAAGAAGAATGC < 41bp 1 0.0282585690862621 1 0.0618838667869568 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176709496 chr5:176709482 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_23965 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_24761 DeepMRMD:1;iRNA_m5C:0.999536712157816 24762 chr2 235951012 235951012 1 + G T HNSC 235950995 + 235950975 235951015 41 TGCAGCTGTGGGGGAAGCACCAGTTCGTTTTGTCCAGGCCC TGCAGCTGTGGGGGAAGCACCAGTTCGTTTTGTCCAGTCCC < 41bp 1 0.212217673462189 1 0.581993758678436 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235950995 chr2:235951012 nonsynonymous SNV 0.943 1 38 hm5C_associated_SNPs_23966 0 0 1 0 0 cytosol 1 0.500231643921092 0.836012482643128 0.999536712157815 hm5C_site_24762 DeepMRMD:0.836012482643128;iRNA_m5C:0.999536712157815 24763 chr14 69704350 69704350 1 + A T HNSC 69704365 + 69704345 69704385 41 ACCACAACTCCCACGATGTGCTGCTGCTCTGCACCTCCTGC ACCACTACTCCCACGATGTGCTGCTGCTCTGCACCTCCTGC < 41bp 1 0.513972034595044 1 0.0930755138397217 experiment 0.972055930809912 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EXD2 ENSG00000081177 CDS Human protein_coding chr14:69704365 chr14:69704350 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_23967 0 0 1 0 1 Ribosome 1 0.500231778122933 1 0.999536443754135 hm5C_site_24763 DeepMRMD:1;iRNA_m5C:0.999536443754135 24764 chr17 79418800 79418800 1 + G A HNSC 79418808 + 79418788 79418828 41 CACTGCCCCAGCGCAGCCGCCCACAGCCAACCCCTGCAGCG CACTGCCCCAGCACAGCCGCCCACAGCCAACCCCTGCAGCG < 41bp 1 0.121890209997383 1 0.0703894197940826 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BAHCC1 ENSG00000171282 CDS Human other chr17:79418808 chr17:79418800 synonymous SNV . 0 13 hm5C_associated_SNPs_23968 0 0 1 0 1 chromatin 1 0.500231574608477 1 0.999536850783046 hm5C_site_24764 DeepMRMD:1;iRNA_m5C:0.999536850783046 24765 chr2 191235874 191235874 1 + G T HNSC 191235863 + 191235843 191235883 41 CATCTTTTCAGAAGATACCACATTCAAATGGGACTCTTGTG CATCTTTTCAGAAGATACCACATTCAAATGGTACTCTTGTG < 41bp 1 0.0301247042150559 1 0.360723972320557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INPP1 ENSG00000151689 CDS Human protein_coding chr2:191235863 chr2:191235874 nonsynonymous SNV 0.991 5 32 hm5C_associated_SNPs_23969 0 0 0 0 0 exosome 1 0.500231711723073 1 0.999536576553854 hm5C_site_24765 DeepMRMD:1;iRNA_m5C:0.999536576553854 24766 chr5 147819261 147819261 1 + C G HNSC 147819249 + 147819229 147819269 41 AGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGT AGCAGAAGCTATTTAGTGGTCCCTACCCCTATGACATCTGT < 41bp 1 0.217867009502366 1 0.0534871220588684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819249 chr5:147819261 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_23970 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24766 DeepMRMD:1;iRNA_m5C:0.999536712157815 24767 chr5 147819261 147819261 1 + C G HNSC 147819251 + 147819231 147819271 41 CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTAT CAGAAGCTATTTAGTGGTCCCTACCCCTATGACATCTGTAT < 41bp 1 0.129005656670887 1 0.0516937673091888 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819251 chr5:147819261 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_23971 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24767 DeepMRMD:1;iRNA_m5C:0.999536712157815 24768 chr5 147819261 147819261 1 + C G HNSC 147819256 + 147819236 147819276 41 GCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCC GCTATTTAGTGGTCCCTACCCCTATGACATCTGTATTATCC < 41bp 1 0.124633820877563 1 0.215600520372391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819256 chr5:147819261 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_23972 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24768 DeepMRMD:1;iRNA_m5C:0.999536712157815 24769 chr5 147819261 147819261 1 + C G HNSC 147819257 + 147819237 147819277 41 CTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCA CTATTTAGTGGTCCCTACCCCTATGACATCTGTATTATCCA < 41bp 1 0.200176876797356 1 0.363972723484039 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819257 chr5:147819261 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_23973 0 0 1 0 2 Ribosome 1 0.500231644008333 1 0.999536711983334 hm5C_site_24769 DeepMRMD:1;iRNA_m5C:0.999536711983334 24770 chr12 53671305 53671305 1 + G A HNSC 53671316 + 53671296 53671336 41 GAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT GAGGAATTTAAAGTCAATGACCTGAACTATGAAGATAAACT < 41bp 1 0.0548826153903518 1 0.0393885672092438 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671316 chr12:53671305 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_23974 0 0 1 0 1 Nucleus 1 0.500231650223548 1 0.999536699552904 hm5C_site_24770 DeepMRMD:1;iRNA_m5C:0.999536699552904 24771 chr3 126708596 126708596 1 + G A HNSC 126708579 + 126708559 126708599 41 TCCTGCTACCGTGGTGAGGGCAAGCTCTCCCTGCCGTGGCT TCCTGCTACCGTGGTGAGGGCAAGCTCTCCCTGCCGTAGCT < 41bp 1 0.125411361964012 1 0.408017545938492 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126708579 chr3:126708596 stopgain 0.929 1 38 hm5C_associated_SNPs_23975 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24771 DeepMRMD:1;iRNA_m5C:0.999536712157815 24772 chr19 47763905 47763905 1 + A T HNSC 47763890 + 47763870 47763910 41 GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGG GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCTAGGGG < 41bp 1 0.201279350614639 1 0.235941588878632 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763890 chr19:47763905 stopgain 0.982 0 36 hm5C_associated_SNPs_23976 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24772 DeepMRMD:1;iRNA_m5C:0.999536712157815 24773 chr19 47763905 47763905 1 + A T HNSC 47763892 + 47763872 47763912 41 TCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGG TCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCTAGGGGGG < 41bp 1 0.405318152382171 1 0.484268188476562 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763892 chr19:47763905 stopgain 0.982 0 34 hm5C_associated_SNPs_23978 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24773 DeepMRMD:1;iRNA_m5C:0.999536712157815 24774 chr19 47763905 47763905 1 + A T HNSC 47763893 + 47763873 47763913 41 CTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGC CTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCTAGGGGGGC < 41bp 1 0.588347298655556 1 0.73075407743454 experiment 0.823305402688888 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763893 chr19:47763905 stopgain 0.982 0 33 hm5C_associated_SNPs_23979 0 0 1 0 1 chromatin 1 0.500231643921092 0.53849184513092 0.999536712157815 hm5C_site_24774 DeepMRMD:0.53849184513092;iRNA_m5C:0.999536712157815 24775 chr19 47763905 47763905 1 + A T HNSC 47763913 + 47763893 47763933 41 CCAGGGGCCAGCAAGGGGGGCCGGACTCCTCCACAGCAGGG CCAGGGGCCAGCTAGGGGGGCCGGACTCCTCCACAGCAGGG < 41bp 1 0.523938086766908 1 0.428337007761002 experiment 0.952123826466184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763913 chr19:47763905 stopgain 0.982 0 13 hm5C_associated_SNPs_23980 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24775 DeepMRMD:1;iRNA_m5C:0.999536712157815 24776 chr1 78325024 78325024 1 + G C HNSC 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGACACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA < 41bp 1 0.209356797421082 1 0.142018228769302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325024 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23982 0 0 1 3 2 unknown 1 0.500231644286481 1 0.999536711427038 hm5C_site_24776 DeepMRMD:1;iRNA_m5C:0.999536711427038 24777 chr9 100425264 100425264 1 + G A HNSC 100425251 + 100425231 100425271 41 AAAAGGTTTCATGAAGTCTTCAAAACCCTAGCTGAAAGTGA AAAAGGTTTCATGAAGTCTTCAAAACCCTAGCTAAAAGTGA < 41bp 1 0.234751777070557 1 0.517305254936218 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100425251 chr9:100425264 nonsynonymous SNV 0.996 1 34 hm5C_associated_SNPs_23983 0 0 1 0 2 Nucleus 1 0.500231643921092 0.965389490127564 0.999536712157815 hm5C_site_24777 DeepMRMD:0.965389490127564;iRNA_m5C:0.999536712157815 24778 chrX 41048594 41048594 1 + C T HNSC 41048581 + 41048561 41048601 41 GACCAATGCAGGCAATGAGCCAGACTTGGAAGACGAACAGG GACCAATGCAGGCAATGAGCCAGACTTGGAAGATGAACAGG < 41bp 1 0.166694844796217 1 0.433756530284882 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41048581 chrX:41048594 synonymous SNV . 0 34 hm5C_associated_SNPs_23984 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_24778 DeepMRMD:1;iRNA_m5C:0.999536712157815 24779 chr9 18721646 18721646 1 + G A HNSC 18721629 + 18721609 18721649 41 GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTAGAT < 41bp 1 0.401188598553422 1 0.394294619560242 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18721629 chr9:18721646 synonymous SNV . 0 38 hm5C_associated_SNPs_23985 0 0 0 0 1 Nucleus 1 0.500231643914318 1 0.999536712171363 hm5C_site_24779 DeepMRMD:1;iRNA_m5C:0.999536712171363 24780 chr5 154396174 154396174 1 + G T HNSC 154396182 + 154396162 154396202 41 GAGTTACAAGCTGAGCTGGTCAGAATGGAGCAACAGCACCA GAGTTACAAGCTTAGCTGGTCAGAATGGAGCAACAGCACCA < 41bp 1 0.637014808658296 1 0.292317926883698 experiment 0.725970382683409 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF4B ENSG00000226650 CDS Human protein_coding chr5:154396182 chr5:154396174 stopgain 0.515 0 13 hm5C_associated_SNPs_23986 0 0 0 0 0 exosome 1 0.498995523398809 1 1 hm5C_site_24780 DeepMRMD:1;iRNA_m5C:1 24781 chr7 65751528 65751528 1 + G A HNSC 65751509 + 65751489 65751529 41 TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAGC TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAAC < 41bp 1 0.635732058327088 1 0.442680537700653 experiment 0.728535883345825 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751509 chr7:65751528 synonymous SNV . 0 40 hm5C_associated_SNPs_23987 0 0 1 3 0 nucleoplasm 1 0.500231643918213 1 0.999536712163575 hm5C_site_24781 DeepMRMD:1;iRNA_m5C:0.999536712163575 24782 chr6 30860256 30860256 1 + C T HNSC 30860273 + 30860253 30860293 41 TTTCTGCAGTGCCGCTTCCTCTTTGCGGGGCCCTGGTTACT TTTTTGCAGTGCCGCTTCCTCTTTGCGGGGCCCTGGTTACT < 41bp 1 0.283613904616037 1 0.0968198478221893 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30860273 chr6:30860256 synonymous SNV . 0 4 hm5C_associated_SNPs_23988 0 0 1 0 1 Ribosome 1 0.500231658402237 1 0.999536683195526 hm5C_site_24782 DeepMRMD:1;iRNA_m5C:0.999536683195526 24783 chr10 129141970 129141970 1 + G C HNSC 129141950 + 129141930 129141970 41 CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAACTGG CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAACTGC < 41bp 1 0.535232379742146 1 0.861252009868622 experiment 0.929535240515708 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141950 chr10:129141970 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_23989 0 0 0 0 2 Nucleus 1 0.500231643921086 0.277495980262756 0.999536712157828 hm5C_site_24783 DeepMRMD:0.277495980262756;iRNA_m5C:0.999536712157828 24784 chr10 129141970 129141970 1 + G C HNSC 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTTTCCTTACTCAAGAGTCCCTGCAACTGCAGAATTTTTC < 41bp 1 0.0115269011021158 1 0.0309551060199738 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141970 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_23990 0 0 0 0 2 Nucleus 1 0.500231644016979 1 0.999536711966041 hm5C_site_24784 DeepMRMD:1;iRNA_m5C:0.999536711966041 24785 chr10 129141970 129141970 1 + G C HNSC 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTTTCCTTACTCAAGAGTCCCTGCAACTGCAGAATTTTTCA < 41bp 1 0.237021227157086 1 0.184007167816162 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141970 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_23991 0 0 0 0 2 Nucleus 1 0.500231643921089 1 0.999536712157821 hm5C_site_24785 DeepMRMD:1;iRNA_m5C:0.999536712157821 24786 chr10 129141970 129141970 1 + G C HNSC 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTGCAACTGCAGAATTTTTCAAGT < 41bp 1 0.0849138745938764 1 0.194601982831955 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141970 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_23992 0 0 0 0 2 Nucleus 1 0.500231644166175 1 0.999536711667649 hm5C_site_24786 DeepMRMD:1;iRNA_m5C:0.999536711667649 24787 chr10 129141970 129141970 1 + G C HNSC 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTGCAACTGCAGAATTTTTCAAGTGCC < 41bp 1 0.360517780929618 1 0.439992606639862 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141970 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_23993 0 0 0 0 2 Nucleus 1 0.500231642542958 1 0.999536714914083 hm5C_site_24787 DeepMRMD:1;iRNA_m5C:0.999536714914083 24788 chr10 129141970 129141970 1 + G C HNSC 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTGCAACTGCAGAATTTTTCAAGTGCCAAGAGAGCCAAAA < 41bp 1 0.337788026639934 1 0.931912004947662 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141970 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_23994 0 0 0 0 2 Nucleus 1 0.500231646726294 0.136175990104676 0.999536706547412 hm5C_site_24788 DeepMRMD:0.136175990104676;iRNA_m5C:0.999536706547412 24789 chr10 129141970 129141970 1 + G C HNSC 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGCAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA < 41bp 1 0.0365244319058073 1 0.215105414390564 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129141970 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_23995 0 0 0 0 2 Nucleus 1 0.500231643911854 1 0.999536712176291 hm5C_site_24789 DeepMRMD:1;iRNA_m5C:0.999536712176291 24790 chr10 129141970 129141970 1 + G C HNSC 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGCAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA < 41bp 1 0.475982085410083 1 0.669103860855103 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129141970 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_23996 0 0 0 0 2 Nucleus 1 0.500231643385443 0.661792278289794 0.999536713229114 hm5C_site_24790 DeepMRMD:0.661792278289794;iRNA_m5C:0.999536713229114 24791 chr8 104343656 104343656 1 + C G HNSC 104343665 + 104343645 104343685 41 CCAAGCAGCCTCAAAGGTTCCACATCTCTGCTTGTTCACCC CCAAGCAGCCTGAAAGGTTCCACATCTCTGCTTGTTCACCC < 41bp 1 0.55124494209921 1 0.0575250089168549 experiment 0.897510115801581 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104343665 chr8:104343656 synonymous SNV . 0 12 hm5C_associated_SNPs_23997 0 0 1 0 1 Ribosome 1 0.500231743394064 1 0.999536513211872 hm5C_site_24791 DeepMRMD:1;iRNA_m5C:0.999536513211872 24792 chr19 16314374 16314374 1 + C T HNSC 16314393 + 16314373 16314413 41 TCCTGGCCCACGGGGGGGTCCGTTTCATGTGGATCAAACAC TTCTGGCCCACGGGGGGGTCCGTTTCATGTGGATCAAACAC < 41bp 1 0.0871270130254072 1 0.167800456285477 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16314393 chr19:16314374 synonymous SNV . 0 2 hm5C_associated_SNPs_23998 0 0 1 0 1 Ribosome 1 0.500231646073763 1 0.999536707852474 hm5C_site_24792 DeepMRMD:1;iRNA_m5C:0.999536707852474 24793 chr17 55075841 55075841 1 + G T HNSC 55075847 + 55075827 55075867 41 TCAAAATTATTCCTGAGGATCAATCCTGGGGAGGTACTTAT TCAAAATTATTCCTTAGGATCAATCCTGGGGAGGTACTTAT < 41bp 1 0.10106217003506 1 0.0596193671226501 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55075847 chr17:55075841 stopgain 0.926 0 15 hm5C_associated_SNPs_23999 0 0 1 0 2 Ribosome 1 0.500231643921042 1 0.999536712157915 hm5C_site_24793 DeepMRMD:1;iRNA_m5C:0.999536712157915 24794 chr12 95868071 95868071 1 + G C HNSC 95868059 + 95868039 95868079 41 CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAACACGAAAGA < 41bp 1 0.344351028118365 1 0.539569616317749 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95868059 chr12:95868071 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_24000 0 0 1 0 1 Ribosome 1 0.500231722198231 0.920860767364502 0.999536555603537 hm5C_site_24794 DeepMRMD:0.920860767364502;iRNA_m5C:0.999536555603537 24795 chr5 14291310 14291310 1 + G A HNSC 14291323 + 14291303 14291343 41 TCCAGCTGAGGCTGTTTGAACAGGATGCTGAGAAGGTAAAG TCCAGCTAAGGCTGTTTGAACAGGATGCTGAGAAGGTAAAG < 41bp 1 0.514136781789559 1 0.70270049571991 experiment 0.971726436420883 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14291323 chr5:14291310 synonymous SNV . 0 8 hm5C_associated_SNPs_24001 0 0 1 0 1 Nucleus 1 0.50023164397066 0.59459900856018 0.99953671205868 hm5C_site_24795 DeepMRMD:0.59459900856018;iRNA_m5C:0.99953671205868 24796 chr5 176519745 176519745 1 + C T HNSC 176519758 + 176519738 176519778 41 ATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG ATTCCATTGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG < 41bp 1 0.347222915681765 1 0.252241671085358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519758 chr5:176519745 synonymous SNV . 0 8 hm5C_associated_SNPs_24003 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643856733 1 0.999536712286534 hm5C_site_24796 DeepMRMD:1;iRNA_m5C:0.999536712286534 24797 chr20 47691914 47691914 1 + G C HNSC 47691921 + 47691901 47691941 41 ATGCAAGTTTTTTGAGGGACCTGTGACAGGAATCTTCTCTG ATGCAAGTTTTTTCAGGGACCTGTGACAGGAATCTTCTCTG < 41bp 1 0.507572158057377 1 0.294566512107849 experiment 0.984855683885247 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47691921 chr20:47691914 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_24004 0 0 1 0 1 Nucleus 1 0.500231178846612 1 0.999537642306777 hm5C_site_24797 DeepMRMD:1;iRNA_m5C:0.999537642306777 24798 chr19 50902122 50902122 1 + G A HNSC 50902140 + 50902120 50902160 41 GCGGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGG GCAGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGG < 41bp 1 0.512366883457633 1 0.68350213766098 experiment 0.975266233084734 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902140 chr19:50902122 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_24005 1 0 1 0 1 Nucleus 1 0.500231643921092 0.63299572467804 0.999536712157815 hm5C_site_24798 DeepMRMD:0.63299572467804;iRNA_m5C:0.999536712157815 Colorectal cancer 10 Colorectal cancer 10 24799 chr1 213414696 213414696 1 + C A HNSC 213414710 + 213414690 213414730 41 TAAAATCAGAACCTTTGAAACCATTCTTTACTCTTCCAGAT TAAAATAAGAACCTTTGAAACCATTCTTTACTCTTCCAGAT < 41bp 1 0.0635170805414393 1 0.0539752840995789 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213414710 chr1:213414696 stopgain 1.000 0 7 hm5C_associated_SNPs_24007 0 0 0 0 0 Nucleus 1 0.500231643918464 1 0.999536712163073 hm5C_site_24799 DeepMRMD:1;iRNA_m5C:0.999536712163073 24800 chr22 30038255 30038255 1 + C T HNSC 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTCCTGGCTTTTTACGCCGTCCAG < 41bp 1 0.657675514844811 1 0.237353056669235 experiment 0.684648970310377 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038255 nonsynonymous SNV 0.882 4 28 hm5C_associated_SNPs_24009 0 0 1 0 2 Ribosome 1 0.500231643954617 1 0.999536712090766 hm5C_site_24800 DeepMRMD:1;iRNA_m5C:0.999536712090766 24801 chr22 38258977 38258977 1 + G A HNSC 38258983 + 38258963 38259003 41 GTTTTCTTTACAGGGGGGACCTTCCTTGGAGCAGAGGTTTG GTTTTCTTTACAGGAGGGACCTTCCTTGGAGCAGAGGTTTG < 41bp 1 0.0676454539018355 1 0.193387418985367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38258983 chr22:38258977 nonsynonymous SNV 0.997 2 15 hm5C_associated_SNPs_24010 0 0 1 0 2 Cytosol 1 0.500231644517704 1 0.999536710964592 hm5C_site_24801 DeepMRMD:1;iRNA_m5C:0.999536710964592 24802 chr11 65396095 65396095 1 + C T HNSC 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTTGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG < 41bp 1 0.509478921076695 1 0.56300950050354 experiment 0.981042157846611 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396095 synonymous SNV . 0 6 hm5C_associated_SNPs_24011 0 0 1 0 2 Ribosome 1 0.500228786734314 0.87398099899292 0.999542426531372 hm5C_site_24802 DeepMRMD:0.87398099899292;iRNA_m5C:0.999542426531372 24803 chr1 40525048 40525048 1 + A T HNSC 40525031 + 40525011 40525051 41 GGTCCATTATGGCTGACATGCAAAATCTGGTAGAAAGATTG GGTCCATTATGGCTGACATGCAAAATCTGGTAGAAAGTTTG < 41bp 1 0.566609929032918 1 0.70043683052063 experiment 0.866780141934163 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAP1 ENSG00000131236 CDS Human protein_coding chr1:40525031 chr1:40525048 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_24012 0 0 1 1 3 Ribosome 1 0.500231643921408 0.59912633895874 0.999536712157183 hm5C_site_24803 DeepMRMD:0.59912633895874;iRNA_m5C:0.999536712157183 24804 chr7 98563391 98563391 1 + G A HNSC 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACGCGCCTGGCAGTGATGAGCATGGAGATGCAGAAGAACTT < 41bp 1 0.184343492602665 1 0.390172958374023 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563391 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_24013 0 0 1 0 1 Nucleus 1 0.500231643921095 1 0.99953671215781 hm5C_site_24804 DeepMRMD:1;iRNA_m5C:0.99953671215781 24805 chr1 183083794 183083794 1 + G C HNSC 183083799 + 183083779 183083819 41 TGTGAGAGGTGCCGAGAGAACTTCTTCCGCCTTGGCAACAA TGTGAGAGGTGCCGACAGAACTTCTTCCGCCTTGGCAACAA < 41bp 1 0.398274205710095 1 0.151609361171722 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183083799 chr1:183083794 nonsynonymous SNV 0.966 2 16 hm5C_associated_SNPs_24014 0 0 1 0 1 Ribosome 1 0.500231643921122 1 0.999536712157757 hm5C_site_24805 DeepMRMD:1;iRNA_m5C:0.999536712157757 24806 chr5 74638523 74638523 1 + G A HNSC 74638509 + 74638489 74638529 41 TCATAGTGGGGACAGTGACACTGACCATCTGCATGATGTCC TCATAGTGGGGACAGTGACACTGACCATCTGCATAATGTCC < 41bp 1 0.316133536032819 1 0.123882442712784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMGCR ENSG00000113161 CDS Human protein_coding chr5:74638509 chr5:74638523 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_24015 0 0 1 0 1 Nucleus 1 0.5002315425848 1 0.999536914830399 hm5C_site_24806 DeepMRMD:1;iRNA_m5C:0.999536914830399 24807 chr5 115628170 115628170 1 + T C HNSC 115628155 + 115628135 115628175 41 TCTTTGTAAATAGCTAGAGACTATACAAGCACAGCTGGATT TCTTTGTAAATAGCTAGAGACTATACAAGCACAGCCGGATT < 41bp 1 0.385505214895597 1 0.42743057012558 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115628155 chr5:115628170 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_24016 0 0 1 0 1 Ribosome 1 0.500231643931675 1 0.99953671213665 hm5C_site_24807 DeepMRMD:1;iRNA_m5C:0.99953671213665 24808 chr8 145662239 145662239 1 + T C HNSC 145662226 - 145662206 145662246 41 GCTGCGAAGGCATCACCCCCCTCCACGATGCCCTCAACTGT GCTGCGAGGGCATCACCCCCCTCCACGATGCCCTCAACTGT < 41bp 1 0.64587265385943 1 0.89185893535614 experiment 0.708254692281139 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TONSL ENSG00000160949 CDS Human protein_coding chr8:145662226 chr8:145662239 synonymous SNV . 0 8 hm5C_associated_SNPs_24017 0 0 1 0 2 Nucleus 1 0.500218763730715 0.21628212928772 0.99956247253857 hm5C_site_24808 DeepMRMD:0.21628212928772;iRNA_m5C:0.99956247253857 24809 chr20 33033227 33033227 1 + A T HNSC 33033240 + 33033220 33033260 41 AGCTTCAAGGAGCAATGCAGCAGTTTAACCAGAGATTCATT AGCTTCATGGAGCAATGCAGCAGTTTAACCAGAGATTCATT < 41bp 1 0.202011048459529 1 0.37555006146431 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITCH ENSG00000078747 CDS Human protein_coding chr20:33033240 chr20:33033227 nonsynonymous SNV 0.999 3 8 hm5C_associated_SNPs_24018 0 0 1 0 1 Ribosome 1 0.50023164392016 1 0.999536712159681 hm5C_site_24809 DeepMRMD:1;iRNA_m5C:0.999536712159681 24810 chr11 25004816 25004816 1 + C A HNSC 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTACAGATGCAGCGGCCAAAAGCAAGGTACCTA < 41bp 1 0.296093612330681 1 0.261888414621353 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004816 nonsynonymous SNV 0.017 0 11 hm5C_associated_SNPs_24019 0 0 0 0 1 exosome 1 0.500231643857399 1 0.999536712285202 hm5C_site_24810 DeepMRMD:1;iRNA_m5C:0.999536712285202 24811 chr7 138944065 138944065 1 + A G HNSC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGCGGAAGCGGAAAGGGGAAGGGGAAAAG < 41bp 1 0.538543202975917 1 0.596090793609619 experiment 0.922913594048167 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944065 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_24020 0 0 1 0 2 Cytosol 1 0.500231643921092 0.807818412780762 0.999536712157815 hm5C_site_24811 DeepMRMD:0.807818412780762;iRNA_m5C:0.999536712157815 24812 chr5 44815101 44815101 1 + C T HNSC 44815097 + 44815077 44815117 41 AAATACTTTTCCTTTTTCTGCTACCAGCTAAATACTTTGGC AAATACTTTTCCTTTTTCTGCTACTAGCTAAATACTTTGGC < 41bp 1 0.189525378782859 1 0.0819256007671356 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPS30 ENSG00000112996 CDS Human protein_coding chr5:44815097 chr5:44815101 stopgain 1.000 1 25 hm5C_associated_SNPs_24021 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24812 DeepMRMD:1;iRNA_m5C:0.999536712157815 24813 chr3 183855540 183855540 1 + G A HNSC 183855522 + 183855502 183855542 41 GATGCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA GATGCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTATA < 41bp 1 0.41157195652398 1 0.0923889875411987 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183855522 chr3:183855540 synonymous SNV . 0 39 hm5C_associated_SNPs_24022 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24813 DeepMRMD:1;iRNA_m5C:0.999536712157815 24814 chr11 68177399 68177399 1 + C T HNSC 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CGCCTTTATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT < 41bp 1 0.424588174672791 1 0.737326085567474 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177399 synonymous SNV . 0 7 hm5C_associated_SNPs_24023 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921125 0.525347828865052 0.99953671215775 hm5C_site_24814 DeepMRMD:0.525347828865052;iRNA_m5C:0.99953671215775 24815 chr8 28906499 28906499 1 + A T HNSC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATTGA < 41bp 1 0.266178621397999 1 0.685808777809143 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906499 synonymous SNV . 0 39 hm5C_associated_SNPs_24024 0 0 1 2 4 Nucleus 1 0.500231643921092 0.628382444381714 0.999536712157815 hm5C_site_24815 DeepMRMD:0.628382444381714;iRNA_m5C:0.999536712157815 24816 chr8 28906499 28906499 1 + A T HNSC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT ATGGGATTGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.54382320291201 1 0.52836287021637 experiment 0.912353594175981 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906499 synonymous SNV . 0 8 hm5C_associated_SNPs_24025 0 0 1 2 4 Nucleus 1 0.500231910121013 0.94327425956726 0.999536179757973 hm5C_site_24816 DeepMRMD:0.94327425956726;iRNA_m5C:0.999536179757973 24817 chr2 207651558 207651558 1 + A T HNSC 207651570 + 207651550 207651590 41 GATGAATTACTTTCCCCTGGCTCCTTTTAATCAGCTTCTGC GATGAATTTCTTTCCCCTGGCTCCTTTTAATCAGCTTCTGC < 41bp 1 0.318696037981104 1 0.0853344202041626 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207651570 chr2:207651558 nonsynonymous SNV 0.421 1 9 hm5C_associated_SNPs_24027 0 0 1 0 1 Nucleus 1 0.500231705741173 1 0.999536588517653 hm5C_site_24817 DeepMRMD:1;iRNA_m5C:0.999536588517653 24818 chr2 207651558 207651558 1 + A T HNSC 207651572 + 207651552 207651592 41 TGAATTACTTTCCCCTGGCTCCTTTTAATCAGCTTCTGCAA TGAATTTCTTTCCCCTGGCTCCTTTTAATCAGCTTCTGCAA < 41bp 1 0.0317314733487076 1 0.0139807164669037 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207651572 chr2:207651558 nonsynonymous SNV 0.421 1 7 hm5C_associated_SNPs_24028 0 0 1 0 1 Nucleus 1 0.500231643921116 1 0.999536712157769 hm5C_site_24818 DeepMRMD:1;iRNA_m5C:0.999536712157769 24819 chr10 127512150 127512150 1 + T A HNSC 127512131 + 127512111 127512151 41 CAGTGTGAGCGGCAACATGGCGTCCAGGTCTAAGCGGCGTG CAGTGTGAGCGGCAACATGGCGTCCAGGTCTAAGCGGCGAG < 41bp 1 0.364469459054531 1 0.280750751495361 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCCIP ENSG00000107949 CDS Human protein_coding chr10:127512131 chr10:127512150 synonymous SNV . 0 40 hm5C_associated_SNPs_24029 0 0 1 0 0 Ribosome 1 0.500231643916472 1 0.999536712167056 hm5C_site_24819 DeepMRMD:1;iRNA_m5C:0.999536712167056 24820 chr12 53495921 53495921 1 + C T HNSC 53495923 + 53495903 53495943 41 TCCAGATGGCAATGGAAGCTCCTCCTGCCCCACTGGGAGTA TCCAGATGGCAATGGAAGTTCCTCCTGCCCCACTGGGAGTA < 41bp 1 0.120531821146496 1 0.122808247804642 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IGFBP6 ENSG00000167779 CDS Human protein_coding chr12:53495923 chr12:53495921 synonymous SNV . 0 19 hm5C_associated_SNPs_24031 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24820 DeepMRMD:1;iRNA_m5C:0.999536712157815 24821 chrX 19373837 19373837 1 + G A HNSC 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCCGAGAGACAACAAGGTTTGCTGCTGCCT < 41bp 1 0.655817246918713 1 0.532493531703949 experiment 0.688365506162574 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373837 nonsynonymous SNV 0.998 5 20 hm5C_associated_SNPs_24032 0 0 1 0 2 Ribosome 1 0.500231644181779 0.935012936592102 0.999536711636442 hm5C_site_24821 DeepMRMD:0.935012936592102;iRNA_m5C:0.999536711636442 24822 chr19 613894 613894 1 + G A HNSC 613878 + 613858 613898 41 GCCTGCTCACCCGGGGCCGCCGCACGGCGAGCGTGCGGGCT GCCTGCTCACCCGGGGCCGCCGCACGGCGAGCGTGCAGGCT < 41bp 1 0.225340722771907 1 0.186949670314789 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCN2 ENSG00000099822 CDS Human protein_coding chr19:613878 chr19:613894 nonsynonymous SNV 0.970 3 37 hm5C_associated_SNPs_24033 0 0 0 0 1 chromatin 1 0.500232702717834 1 0.999534594564332 hm5C_site_24822 DeepMRMD:1;iRNA_m5C:0.999534594564332 24823 chr7 155534637 155534637 1 + G A HNSC 155534638 + 155534618 155534658 41 ATAGAAATGAGCAGCAGCCGCTGCTCTGCCACGCCCTCAGC ATAGAAATGAGCAGCAGCCACTGCTCTGCCACGCCCTCAGC < 41bp 1 0.480681949313989 1 0.168309956789017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM33 ENSG00000184863 CDS Human protein_coding chr7:155534638 chr7:155534637 nonsynonymous SNV 0.015 2 20 hm5C_associated_SNPs_24034 0 0 1 0 0 Nucleus 1 0.500231652030777 1 0.999536695938447 hm5C_site_24823 DeepMRMD:1;iRNA_m5C:0.999536695938447 24824 chr9 88622379 88622379 1 + A C HNSC 88622373 + 88622353 88622393 41 TGTCAGTCCTCCGGTGCTTTCCCCCAAGTAAGTATTGTAAG TGTCAGTCCTCCGGTGCTTTCCCCCACGTAAGTATTGTAAG < 41bp 1 0.197529268894606 1 0.463975876569748 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA35 ENSG00000135040 CDS Human protein_coding chr9:88622373 chr9:88622379 nonsynonymous SNV 0.979 2 27 hm5C_associated_SNPs_24035 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24824 DeepMRMD:1;iRNA_m5C:0.999536712157815 24825 chr9 88622379 88622379 1 + A C HNSC 88622374 + 88622354 88622394 41 GTCAGTCCTCCGGTGCTTTCCCCCAAGTAAGTATTGTAAGA GTCAGTCCTCCGGTGCTTTCCCCCACGTAAGTATTGTAAGA < 41bp 1 0.526864541781994 1 0.755307674407959 experiment 0.946270916436011 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA35 ENSG00000135040 CDS Human protein_coding chr9:88622374 chr9:88622379 nonsynonymous SNV 0.979 2 26 hm5C_associated_SNPs_24036 0 0 0 0 1 Cytosol 1 0.500231643921101 0.489384651184082 0.999536712157797 hm5C_site_24825 DeepMRMD:0.489384651184082;iRNA_m5C:0.999536712157797 24826 chr19 1255048 1255048 1 + G A HNSC 1255058 + 1255038 1255078 41 GGTCTTCTCAGGGACCTTCTCTGGTAGGTGTCACAGCACAT GGTCTTCTCAAGGACCTTCTCTGGTAGGTGTCACAGCACAT < 41bp 1 0.652852123817784 1 0.416120141744614 experiment 0.694295752364432 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MIDN ENSG00000167470 CDS Human protein_coding chr19:1255058 chr19:1255048 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_24037 0 0 1 0 1 chromatin 1 0.500231642659264 1 0.999536714681472 hm5C_site_24826 DeepMRMD:1;iRNA_m5C:0.999536714681472 24827 chr11 6414491 6414491 1 + C T HNSC 6414500 + 6414480 6414520 41 GGTCTCCGCCTCATCTCTCTCAATATGAATTTTTGTTCCCG GGTCTCCGCCTTATCTCTCTCAATATGAATTTTTGTTCCCG < 41bp 1 0.419801885369215 1 0.702865481376648 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6414500 chr11:6414491 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_24038 0 0 1 1 1 Endoplasmic reticulum 1 0.500231643921092 0.594269037246704 0.999536712157815 hm5C_site_24827 DeepMRMD:0.594269037246704;iRNA_m5C:0.999536712157815 24828 chr19 5667168 5667168 1 + C G HNSC 5667169 + 5667149 5667189 41 GGGCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACA GGGCCGGGGGCTGCCTCCTGCCCCCAGGTTTGTGTCCCACA < 41bp 1 0.20930276615298 1 0.141305357217789 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667169 chr19:5667168 nonsynonymous SNV 0.995 1 20 hm5C_associated_SNPs_24040 0 0 1 0 1 chromatin 1 0.500231643920755 1 0.99953671215849 hm5C_site_24828 DeepMRMD:1;iRNA_m5C:0.99953671215849 24829 chr19 5667168 5667168 1 + C G HNSC 5667171 + 5667151 5667191 41 GCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACC GCCGGGGGCTGCCTCCTGCCCCCAGGTTTGTGTCCCACACC < 41bp 1 0.543995443158361 1 0.162350535392761 experiment 0.912009113683277 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667171 chr19:5667168 nonsynonymous SNV 0.995 1 18 hm5C_associated_SNPs_24041 0 0 1 0 1 chromatin 1 0.500231643920985 1 0.99953671215803 hm5C_site_24829 DeepMRMD:1;iRNA_m5C:0.99953671215803 24830 chr19 5667168 5667168 1 + C G HNSC 5667172 + 5667152 5667192 41 CCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACCC CCGGGGGCTGCCTCCTGCCCCCAGGTTTGTGTCCCACACCC < 41bp 1 0.628563816075231 1 0.592724561691284 experiment 0.742872367849539 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667172 chr19:5667168 nonsynonymous SNV 0.995 1 17 hm5C_associated_SNPs_24042 0 0 1 0 1 chromatin 1 0.500231350401373 0.814550876617432 0.999537299197253 hm5C_site_24830 DeepMRMD:0.814550876617432;iRNA_m5C:0.999537299197253 24831 chr16 1823374 1823374 1 + G C HNSC 1823378 + 1823358 1823398 41 TCGGAGGCCGCCGCGAGAGCCCGGGACCCAGCGGGTGAGCG TCGGAGGCCGCCGCGACAGCCCGGGACCCAGCGGGTGAGCG < 41bp 1 0.576181406678058 1 0.803494215011597 experiment 0.847637186643884 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EME2 ENSG00000197774 CDS Human protein_coding chr16:1823378 chr16:1823374 nonsynonymous SNV 0.001 0 17 hm5C_associated_SNPs_24044 0 0 1 0 0 chromatin 1 0.500231643852709 0.393011569976806 0.999536712294583 hm5C_site_24831 DeepMRMD:0.393011569976806;iRNA_m5C:0.999536712294583 24832 chr17 57725621 57725621 1 + T A HNSC 57725620 + 57725600 57725640 41 GCAAAATCGTGTGGTGGGAGCTATGCAGCTATATTCTGTAG GCAAAATCGTGTGGTGGGAGCAATGCAGCTATATTCTGTAG < 41bp 1 0.223470476284165 1 0.181329548358917 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57725620 chr17:57725621 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_24045 0 0 1 0 1 Nucleus 1 0.500227907396456 1 0.999544185207087 hm5C_site_24832 DeepMRMD:1;iRNA_m5C:0.999544185207087 24833 chr3 180666565 180666565 1 + T A HNSC 180666572 + 180666552 180666592 41 GGAGCATGCAGAATTTTTTACCATCCAGAAACAACACAGCT GGAGCATGCAGAAATTTTTACCATCCAGAAACAACACAGCT < 41bp 1 0.0257362707889476 1 0.0688800513744354 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180666572 chr3:180666565 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_24046 0 0 0 0 2 Exosome 1 0.50023164392471 1 0.99953671215058 hm5C_site_24833 DeepMRMD:1;iRNA_m5C:0.99953671215058 24834 chr7 65706141 65706141 1 + C T HNSC 65706154 + 65706134 65706174 41 AACTTGTCTTACATCCTGAACGGTGGATGAGAACACTCTTA AACTTGTTTTACATCCTGAACGGTGGATGAGAACACTCTTA < 41bp 1 0.282999580528126 1 0.60989236831665 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65706154 chr7:65706141 synonymous SNV . 0 8 hm5C_associated_SNPs_24047 0 0 0 0 0 nucleoplasm 1 0.50023159161819 0.7802152633667 0.99953681676362 hm5C_site_24834 DeepMRMD:0.7802152633667;iRNA_m5C:0.99953681676362 24835 chr7 44802519 44802519 1 + G A HNSC 44802539 + 44802519 44802559 41 GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT ATCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT < 41bp 1 0.0283469944220709 1 0.0226182341575623 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802539 chr7:44802519 nonsynonymous SNV 0.011 3 1 hm5C_associated_SNPs_24048 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24835 DeepMRMD:1;iRNA_m5C:0.999536712157815 24836 chr1 203821361 203821361 1 + G A HNSC 203821365 + 203821345 203821385 41 AGCATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAA AGCATGAAAACTCGCCAACTCAGCTCTGCCTCAACAGGAAA < 41bp 1 0.503602027904211 1 0.370354473590851 experiment 0.992795944191578 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203821365 chr1:203821361 nonsynonymous SNV 0.975 1 17 hm5C_associated_SNPs_24049 0 0 0 0 1 Nucleus 1 0.500236326416328 1 0.999527347167344 hm5C_site_24836 DeepMRMD:1;iRNA_m5C:0.999527347167344 24837 chr19 18254654 18254654 1 + G A HNSC 18254659 + 18254639 18254679 41 CAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC CAGCCCATCTCTCCTAAATACCATCAGCCTGGACACAATGC < 41bp 1 0.013492041275767 1 0.0109895467758179 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18254659 chr19:18254654 synonymous SNV . 0 16 hm5C_associated_SNPs_24050 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_24837 DeepMRMD:1;iRNA_m5C:0.999536712157814 24838 chr1 22332274 22332274 1 + C T HNSC 22332255 + 22332235 22332275 41 ACTCTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTTG < 41bp 1 0.247559616179597 1 0.439631134271622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332255 chr1:22332274 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_24052 0 0 0 0 1 Endoplasmic reticulum 1 0.500231649959051 1 0.999536700081898 hm5C_site_24838 DeepMRMD:1;iRNA_m5C:0.999536700081898 24839 chr1 22332274 22332274 1 + C T HNSC 22332258 + 22332238 22332278 41 CTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTTGTGT < 41bp 1 0.229927438721406 1 0.104547560214996 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332258 chr1:22332274 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_24053 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921082 1 0.999536712157835 hm5C_site_24839 DeepMRMD:1;iRNA_m5C:0.999536712157835 24840 chr1 22332274 22332274 1 + C T HNSC 22332259 + 22332239 22332279 41 TGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTTGTGTG < 41bp 1 0.284578134062938 1 0.109754055738449 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332259 chr1:22332274 nonsynonymous SNV 0.000 1 36 hm5C_associated_SNPs_24054 0 0 0 0 1 Endoplasmic reticulum 1 0.500239625681745 1 0.99952074863651 hm5C_site_24840 DeepMRMD:1;iRNA_m5C:0.99952074863651 24841 chr1 22332274 22332274 1 + C T HNSC 22332261 + 22332241 22332281 41 AGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG AGGAGCTGTTTGTGCATCCACTCTGGAACCGCTTGTGTGTG < 41bp 1 0.572934651513576 1 0.230777978897095 experiment 0.854130696972849 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332261 chr1:22332274 nonsynonymous SNV 0.000 1 34 hm5C_associated_SNPs_24055 0 0 0 0 1 Endoplasmic reticulum 1 0.500232286604696 1 0.999535426790609 hm5C_site_24841 DeepMRMD:1;iRNA_m5C:0.999535426790609 24842 chr1 22332274 22332274 1 + C T HNSC 22332269 + 22332249 22332289 41 TTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGG TTTGTGCATCCACTCTGGAACCGCTTGTGTGTGGCCTGTGG < 41bp 1 0.264929579924489 1 0.0378570854663849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332269 chr1:22332274 nonsynonymous SNV 0.000 1 26 hm5C_associated_SNPs_24056 0 0 0 0 1 Endoplasmic reticulum 1 0.500230259124325 1 0.99953948175135 hm5C_site_24842 DeepMRMD:1;iRNA_m5C:0.99953948175135 24843 chr1 22332274 22332274 1 + C T HNSC 22332270 + 22332250 22332290 41 TTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGG TTGTGCATCCACTCTGGAACCGCTTGTGTGTGGCCTGTGGG < 41bp 1 0.439631751908789 1 0.0936989784240723 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332270 chr1:22332274 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_24057 0 0 0 0 1 Endoplasmic reticulum 1 0.500231601897078 1 0.999536796205845 hm5C_site_24843 DeepMRMD:1;iRNA_m5C:0.999536796205845 24844 chr1 22332274 22332274 1 + C T HNSC 22332272 + 22332252 22332292 41 GTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGGTG GTGCATCCACTCTGGAACCGCTTGTGTGTGGCCTGTGGGTG < 41bp 1 0.415688463207947 1 0.0735897123813629 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332272 chr1:22332274 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_24058 0 0 0 0 1 Endoplasmic reticulum 1 0.500232212265386 1 0.999535575469228 hm5C_site_24844 DeepMRMD:1;iRNA_m5C:0.999535575469228 24845 chr1 22332274 22332274 1 + C T HNSC 22332283 + 22332263 22332303 41 CTGGAACCGCTCGTGTGTGGCCTGTGGGTGAGTGAATGCTC CTGGAACCGCTTGTGTGTGGCCTGTGGGTGAGTGAATGCTC < 41bp 1 0.224938549145435 1 0.081229567527771 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332283 chr1:22332274 nonsynonymous SNV 0.000 1 12 hm5C_associated_SNPs_24059 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921068 1 0.999536712157863 hm5C_site_24845 DeepMRMD:1;iRNA_m5C:0.999536712157863 24846 chr1 22332274 22332274 1 + C T HNSC 22332284 + 22332264 22332304 41 TGGAACCGCTCGTGTGTGGCCTGTGGGTGAGTGAATGCTCC TGGAACCGCTTGTGTGTGGCCTGTGGGTGAGTGAATGCTCC < 41bp 1 0.53366443874107 1 0.189885288476944 experiment 0.932671122517859 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332284 chr1:22332274 nonsynonymous SNV 0.000 1 11 hm5C_associated_SNPs_24060 0 0 0 0 1 Endoplasmic reticulum 1 0.500231649515825 1 0.999536700968349 hm5C_site_24846 DeepMRMD:1;iRNA_m5C:0.999536700968349 24847 chr17 70119078 70119078 1 + G A HNSC 70119073 + 70119053 70119093 41 GCCGACTCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCA GCCGACTCGCCACACTCCTCCTCCGACATGAGCGAGGTGCA < 41bp 1 0.547732634839572 1 0.87067848443985 experiment 0.904534730320856 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SOX9 ENSG00000125398 CDS Human protein_coding chr17:70119073 chr17:70119078 nonsynonymous SNV 0.940 3 26 hm5C_associated_SNPs_24061 0 0 1 0 1 Cytosol 1 0.500231734434699 0.2586430311203 0.999536531130602 hm5C_site_24847 DeepMRMD:0.2586430311203;iRNA_m5C:0.999536531130602 24848 chr7 92027950 92027950 1 + C T HNSC 92027959 + 92027939 92027979 41 TCAGAGTATTGCCCTGATTCCTCCAGCAACTACAGAAATCA TCAGAGTATTGTCCTGATTCCTCCAGCAACTACAGAAATCA < 41bp 1 0.671393501506738 1 0.427030593156815 experiment 0.657212996986524 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92027959 chr7:92027950 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_24063 0 0 0 0 0 Cytosol 1 0.500231643918951 1 0.999536712162099 hm5C_site_24848 DeepMRMD:1;iRNA_m5C:0.999536712162099 24849 chr2 173429336 173429336 1 + C G HNSC 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTGACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC < 41bp 1 0.533135222645881 1 0.0444088280200958 experiment 0.933729554708238 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429336 synonymous SNV . 0 5 hm5C_associated_SNPs_24064 0 0 1 3 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24849 DeepMRMD:1;iRNA_m5C:0.999536712157815 24850 chr10 106019428 106019428 1 + G A HNSC 106019431 + 106019411 106019451 41 TTCTGGAAAACAGTCAGGGTCAGCTGATCTACGAGTCTGCC TTCTGGAAAACAGTCAGAGTCAGCTGATCTACGAGTCTGCC < 41bp 1 0.634488015033983 1 0.559540688991547 experiment 0.731023969932034 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106019431 chr10:106019428 nonsynonymous SNV 0.993 3 18 hm5C_associated_SNPs_24065 0 0 1 0 1 Ribosome 1 0.500231643921092 0.880918622016906 0.999536712157815 hm5C_site_24850 DeepMRMD:0.880918622016906;iRNA_m5C:0.999536712157815 24851 chr1 53676457 53676457 1 + G A HNSC 53676443 + 53676423 53676463 41 TATCGCCAAGGATGGCTCTACTGCCGTCCACTTTGAGCACT TATCGCCAAGGATGGCTCTACTGCCGTCCACTTTAAGCACT < 41bp 1 0.38767201395755 1 0.116598099470139 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CPT2 ENSG00000157184 CDS Human protein_coding chr1:53676443 chr1:53676457 nonsynonymous SNV 0.914 5 35 hm5C_associated_SNPs_24066 0 0 1 0 0 Ribosome 1 0.500231644044875 1 0.99953671191025 hm5C_site_24851 DeepMRMD:1;iRNA_m5C:0.99953671191025 24852 chr19 49404064 49404064 1 + C T HNSC 49404083 + 49404063 49404103 41 TCTGGGCCCCGAGGAACCCTCCTTCTGTTGCCGCTGCTGCT TTTGGGCCCCGAGGAACCCTCCTTCTGTTGCCGCTGCTGCT < 41bp 1 0.0271321537151338 1 0.0491861701011658 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49404083 chr19:49404064 nonsynonymous SNV 0.089 1 2 hm5C_associated_SNPs_24067 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24852 DeepMRMD:1;iRNA_m5C:0.999536712157815 24853 chr9 139734271 139734271 1 + C T HNSC 139734259 + 139734239 139734279 41 GCCTTCAGACTGAAGAATGACTCGGACCTCTTCGGGCTGGG GCCTTCAGACTGAAGAATGACTCGGACCTCTTTGGGCTGGG < 41bp 1 0.687759955291417 1 0.455679148435593 experiment 0.624480089417167 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734259 chr9:139734271 synonymous SNV . 0 33 hm5C_associated_SNPs_24068 0 0 1 0 1 chromatin 1 0.500231643928901 1 0.999536712142199 hm5C_site_24853 DeepMRMD:1;iRNA_m5C:0.999536712142199 24854 chr9 139734271 139734271 1 + C T HNSC 139734265 + 139734245 139734285 41 AGACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGA AGACTGAAGAATGACTCGGACCTCTTTGGGCTGGGGCTGGA < 41bp 1 0.0735406320909288 1 0.0870526432991028 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734265 chr9:139734271 synonymous SNV . 0 27 hm5C_associated_SNPs_24069 0 0 1 0 1 chromatin 1 0.500231644696272 1 0.999536710607456 hm5C_site_24854 DeepMRMD:1;iRNA_m5C:0.999536710607456 24855 chr9 139734271 139734271 1 + C T HNSC 139734266 + 139734246 139734286 41 GACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAG GACTGAAGAATGACTCGGACCTCTTTGGGCTGGGGCTGGAG < 41bp 1 0.139622622172462 1 0.273324310779572 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734266 chr9:139734271 synonymous SNV . 0 26 hm5C_associated_SNPs_24070 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24855 DeepMRMD:1;iRNA_m5C:0.999536712157815 24856 chr9 139734268 139734268 1 + C T HNSC 139734259 + 139734239 139734279 41 GCCTTCAGACTGAAGAATGACTCGGACCTCTTCGGGCTGGG GCCTTCAGACTGAAGAATGACTCGGACCTTTTCGGGCTGGG < 41bp 1 0.639534101395067 1 0.555086374282837 experiment 0.720931797209866 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734259 chr9:139734268 synonymous SNV . 0 30 hm5C_associated_SNPs_24071 0 0 1 0 1 chromatin 1 0.500231645051101 0.889827251434326 0.999536709897798 hm5C_site_24856 DeepMRMD:0.889827251434326;iRNA_m5C:0.999536709897798 24857 chr9 139734268 139734268 1 + C T HNSC 139734265 + 139734245 139734285 41 AGACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGA AGACTGAAGAATGACTCGGACCTTTTCGGGCTGGGGCTGGA < 41bp 1 0.023782081568199 1 0.0430014133453369 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734265 chr9:139734268 synonymous SNV . 0 24 hm5C_associated_SNPs_24072 0 0 1 0 1 chromatin 1 0.500231643920261 1 0.999536712159478 hm5C_site_24857 DeepMRMD:1;iRNA_m5C:0.999536712159478 24858 chr9 139734268 139734268 1 + C T HNSC 139734266 + 139734246 139734286 41 GACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAG GACTGAAGAATGACTCGGACCTTTTCGGGCTGGGGCTGGAG < 41bp 1 0.0384479963022147 1 0.0558927953243256 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734266 chr9:139734268 synonymous SNV . 0 23 hm5C_associated_SNPs_24073 0 0 1 0 1 chromatin 1 0.500231643982737 1 0.999536712034527 hm5C_site_24858 DeepMRMD:1;iRNA_m5C:0.999536712034527 24859 chr7 135272732 135272732 1 + C G HNSC 135272723 + 135272703 135272743 41 ATCTAGGGGTGGCTCATCAGCGGCCCCCTCAACGCCAGGTG ATCTAGGGGTGGCTCATCAGCGGCCCCCTGAACGCCAGGTG < 41bp 1 0.439279257188651 1 0.599902033805847 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135272723 chr7:135272732 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_24075 0 0 1 0 1 Cytosol 1 0.500231643920338 0.800195932388306 0.999536712159324 hm5C_site_24859 DeepMRMD:0.800195932388306;iRNA_m5C:0.999536712159324 24860 chr5 149212836 149212836 1 + C G HNSC 149212851 + 149212831 149212871 41 TCACCCAAGAGCACCGGGCCCAGACCAAGCCTGCGCCCACT TCACCGAAGAGCACCGGGCCCAGACCAAGCCTGCGCCCACT < 41bp 1 0.297590107566383 1 0.203940778970718 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149212851 chr5:149212836 synonymous SNV . 0 6 hm5C_associated_SNPs_24076 0 0 0 0 0 chromatin 1 0.500231643920906 1 0.999536712158188 hm5C_site_24860 DeepMRMD:1;iRNA_m5C:0.999536712158188 24861 chr5 142264901 142264901 1 + T C HNSC 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTACTGTGGCATCTTAGAAAAACACTTGAATTT < 41bp 1 0.132265983733841 1 0.343417346477509 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264901 synonymous SNV . 0 12 hm5C_associated_SNPs_24077 0 0 1 0 2 Nucleus 1 0.50023166149432 1 0.999536677011361 hm5C_site_24861 DeepMRMD:1;iRNA_m5C:0.999536677011361 24862 chr10 70525798 70525798 1 + G C HNSC 70525803 + 70525783 70525823 41 TTGAGTGTCCTATTGGACTACAGATTAGAGGATAATAAAGA TTGAGTGTCCTATTGCACTACAGATTAGAGGATAATAAAGA < 41bp 1 0.223664778614338 1 0.400704860687256 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70525803 chr10:70525798 nonsynonymous SNV 0.944 4 16 hm5C_associated_SNPs_24078 0 0 1 0 1 Nucleus 1 0.500231643655462 1 0.999536712689075 hm5C_site_24862 DeepMRMD:1;iRNA_m5C:0.999536712689075 24863 chr11 73074856 73074856 1 + G A HNSC 73074840 + 73074820 73074860 41 ATCCGTGACCGCAGGAACAGCATGAAGCTCCAGCATGCGGC ATCCGTGACCGCAGGAACAGCATGAAGCTCCAGCATACGGC < 41bp 1 0.369421468692335 1 0.201722294092178 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73074840 chr11:73074856 nonsynonymous SNV 0.971 1 37 hm5C_associated_SNPs_24079 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24863 DeepMRMD:1;iRNA_m5C:0.999536712157815 24864 chr16 29994473 29994473 1 + C T HNSC 29994488 + 29994468 29994508 41 ATCAGCGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGC ATCAGTGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGC < 41bp 1 0.325637886492956 1 0.281599819660187 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994488 chr16:29994473 synonymous SNV . 0 6 hm5C_associated_SNPs_24080 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24864 DeepMRMD:1;iRNA_m5C:0.999536712157815 24865 chr16 29994473 29994473 1 + C T HNSC 29994493 + 29994473 29994513 41 CGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGCAGATG TGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGCAGATG < 41bp 1 0.0709512575008634 1 0.131417721509933 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994493 chr16:29994473 synonymous SNV . 0 1 hm5C_associated_SNPs_24081 0 0 1 0 1 Nucleus 1 0.500231828086068 1 0.999536343827864 hm5C_site_24865 DeepMRMD:1;iRNA_m5C:0.999536343827864 24866 chr10 79797023 79797023 1 + C T HNSC 79797031 + 79797011 79797051 41 AATGAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTG AATGAAGAAAGTTAGGGGGACTGCAAAGGCCAATGTTGGTG < 41bp 1 0.675365310120216 1 0.329119652509689 experiment 0.649269379759569 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797031 chr10:79797023 synonymous SNV . 0 13 hm5C_associated_SNPs_24083 0 0 1 0 2 chromatin 1 0.500231643941535 1 0.99953671211693 hm5C_site_24866 DeepMRMD:1;iRNA_m5C:0.99953671211693 24867 chr10 79797023 79797023 1 + C T HNSC 79797034 + 79797014 79797054 41 GAAGAAAGTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTG GAAGAAAGTTAGGGGGACTGCAAAGGCCAATGTTGGTGCTG < 41bp 1 0.626028529633522 1 0.689060747623444 experiment 0.747942940732956 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797034 chr10:79797023 synonymous SNV . 0 10 hm5C_associated_SNPs_24084 0 0 1 0 2 chromatin 1 0.500231643921092 0.621878504753112 0.999536712157815 hm5C_site_24867 DeepMRMD:0.621878504753112;iRNA_m5C:0.999536712157815 24868 chr10 79797023 79797023 1 + C T HNSC 79797041 + 79797021 79797061 41 GTCAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAA GTTAGGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAA < 41bp 1 0.410838710720397 1 0.12755760550499 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPS24 ENSG00000138326 CDS Human protein_coding chr10:79797041 chr10:79797023 synonymous SNV . 0 3 hm5C_associated_SNPs_24085 0 0 1 0 2 chromatin 1 0.500231643921014 1 0.999536712157971 hm5C_site_24868 DeepMRMD:1;iRNA_m5C:0.999536712157971 24869 chr18 48190638 48190638 1 + G A HNSC 48190637 + 48190617 48190657 41 AAGTTCAGCGTGGCGTACATCGTCCAGGAGTACATGGAGAC AAGTTCAGCGTGGCGTACATCATCCAGGAGTACATGGAGAC < 41bp 1 0.141454872592624 1 0.0911063253879547 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48190637 chr18:48190638 nonsynonymous SNV 0.979 0 22 hm5C_associated_SNPs_24086 0 0 0 0 0 exosome 1 0.497968030865568 1 1 hm5C_site_24869 DeepMRMD:1;iRNA_m5C:1 24870 chr5 102472491 102472491 1 + C T HNSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATTAATGACTTGAATATGCAGTATCTCATACAAGATAGG < 41bp 1 0.374908127115578 1 0.180243670940399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472491 synonymous SNV . 0 5 hm5C_associated_SNPs_24087 0 0 1 2 2 Cytosol 1 0.500231643943543 1 0.999536712112914 hm5C_site_24870 DeepMRMD:1;iRNA_m5C:0.999536712112914 24871 chr14 102455173 102455173 1 + G C HNSC 102455186 + 102455166 102455206 41 CCTGGTGGAGAGCCAAAGATCAAAGTGAGTGCTTCTGTGGC CCTGGTGCAGAGCCAAAGATCAAAGTGAGTGCTTCTGTGGC < 41bp 1 0.171188131088139 1 0.526167213916779 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102455186 chr14:102455173 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_24088 0 0 1 0 1 Cytosol 1 0.500231640408004 0.947665572166442 0.999536719183991 hm5C_site_24871 DeepMRMD:0.947665572166442;iRNA_m5C:0.999536719183991 24872 chrX 12837668 12837668 1 + G C HNSC 12837674 + 12837654 12837694 41 GTGGAATTTGCTTTGATCCACAAAGAGAGGAAGAAGGCGAA GTGGAATTTGCTTTCATCCACAAAGAGAGGAAGAAGGCGAA < 41bp 1 0.497603223049453 1 0.64471173286438 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12837674 chrX:12837668 nonsynonymous SNV 0.999 3 15 hm5C_associated_SNPs_24089 0 0 0 0 0 Ribosome 1 0.500231644043479 0.71057653427124 0.999536711913042 hm5C_site_24872 DeepMRMD:0.71057653427124;iRNA_m5C:0.999536711913042 24873 chr17 38450695 38450695 1 + G C HNSC 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTAGAGAAAAATGTAAGCCACAGCTGTTCAACTTCCCACCT < 41bp 1 0.533803635567738 1 0.12940588593483 experiment 0.932392728864523 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450695 nonsynonymous SNV 0.992 3 29 hm5C_associated_SNPs_24090 0 0 1 0 2 Nucleus 1 0.500231643921227 1 0.999536712157546 hm5C_site_24873 DeepMRMD:1;iRNA_m5C:0.999536712157546 24874 chr9 140622883 140622883 1 + C G HNSC 140622869 + 140622849 140622889 41 AAGGAACCAAAAGAGGAGATCAACAAAAACATTTCTGACTT AAGGAACCAAAAGAGGAGATCAACAAAAACATTTGTGACTT < 41bp 1 0.458198566220075 1 0.599293172359467 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140622869 chr9:140622883 nonsynonymous SNV 0.372 2 35 hm5C_associated_SNPs_24091 0 0 1 0 2 chromatin 1 0.50023164393095 0.801413655281066 0.9995367121381 hm5C_site_24874 DeepMRMD:0.801413655281066;iRNA_m5C:0.9995367121381 24875 chr17 7752247 7752247 1 + G A HNSC 7752242 + 7752222 7752262 41 TACCTCAGGCGGGCCCTGGGCCCGGGAGCGCAGGGCGGGCG TACCTCAGGCGGGCCCTGGGCCCGGAAGCGCAGGGCGGGCG < 41bp 1 0.447873012699489 1 0.227374047040939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7752242 chr17:7752247 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_24092 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24875 DeepMRMD:1;iRNA_m5C:0.999536712157815 24876 chr8 37978466 37978466 1 + G T HNSC 37978454 + 37978434 37978474 41 TTTTTCCTTTCTGCAGTGACCCTTTGTTTTCTGCTCAGCGC TTTTTCCTTTCTGCAGTGACCCTTTGTTTTCTTCTCAGCGC < 41bp 1 0.0577898812060734 1 0.073207825422287 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ASH2L ENSG00000129691 CDS Human protein_coding chr8:37978454 chr8:37978466 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_24094 0 0 1 0 1 chromatin 1 0.500231305545169 1 0.999537388909662 hm5C_site_24876 DeepMRMD:1;iRNA_m5C:0.999537388909662 24877 chr8 143816795 143816795 1 + G C HNSC 143816777 + 143816757 143816797 41 AGCTGCCCGCTGATCTGCAGCACTGGATCTCCTACAACGAG AGCTGCCCGCTGATCTGCAGCACTGGATCTCCTACAACCAG < 41bp 1 0.293676525778917 1 0.210601538419724 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THEM6 ENSG00000130193 CDS Human protein_coding chr8:143816777 chr8:143816795 nonsynonymous SNV 0.762 1 39 hm5C_associated_SNPs_24095 0 0 1 0 1 Ribosome 1 0.500231652647375 1 0.99953669470525 hm5C_site_24877 DeepMRMD:1;iRNA_m5C:0.99953669470525 24878 chr5 132427045 132427045 1 + T C HNSC 132427041 + 132427021 132427061 41 AAATGAGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG AAATGAGGAGCCAATGGAAACAGACCAGAATGCAAAGGAGG < 41bp 1 0.235546567869352 1 0.51951402425766 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427041 chr5:132427045 synonymous SNV . 0 25 hm5C_associated_SNPs_24096 0 0 1 0 1 Cytosol 1 0.500231643835194 0.96097195148468 0.999536712329611 hm5C_site_24878 DeepMRMD:0.96097195148468;iRNA_m5C:0.999536712329611 24879 chr5 132427045 132427045 1 + T C HNSC 132427046 + 132427026 132427066 41 AGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGGAAGAG AGGAGCCAATGGAAACAGACCAGAATGCAAAGGAGGAAGAG < 41bp 1 0.669336830934926 1 0.28708815574646 experiment 0.661326338130148 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427046 chr5:132427045 synonymous SNV . 0 20 hm5C_associated_SNPs_24097 0 0 1 0 1 Cytosol 1 0.500231643921136 1 0.999536712157729 hm5C_site_24879 DeepMRMD:1;iRNA_m5C:0.999536712157729 24880 chr5 132427045 132427045 1 + T C HNSC 132427053 + 132427033 132427073 41 AATGGAAACAGATCAGAATGCAAAGGAGGAAGAGGTAATCT AATGGAAACAGACCAGAATGCAAAGGAGGAAGAGGTAATCT < 41bp 1 0.567740383945601 1 0.270610302686691 experiment 0.864519232108798 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427053 chr5:132427045 synonymous SNV . 0 13 hm5C_associated_SNPs_24098 0 0 1 0 1 Cytosol 1 0.500231643921186 1 0.999536712157629 hm5C_site_24880 DeepMRMD:1;iRNA_m5C:0.999536712157629 24881 chr10 6265929 6265929 1 + C T HNSC 6265930 + 6265910 6265950 41 TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTCTTC TTCAATTTCAGAGGAGATGTCCTACCTGAAATGCCCTCTTC < 41bp 1 0.0514302819302265 1 0.0706007480621338 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6265930 chr10:6265929 nonsynonymous SNV 0.995 4 20 hm5C_associated_SNPs_24099 0 0 1 0 2 Ribosome 1 0.500231643921107 1 0.999536712157786 hm5C_site_24881 DeepMRMD:1;iRNA_m5C:0.999536712157786 24882 chr7 142458443 142458443 1 + G T HNSC 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTGGTGGCTACAACTGTGA < 41bp 1 0.240132078585499 1 0.0865887999534607 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458443 synonymous SNV . 0 27 hm5C_associated_SNPs_24101 0 0 0 0 1 Cytosol 1 0.500231638089067 1 0.999536723821866 hm5C_site_24882 DeepMRMD:1;iRNA_m5C:0.999536723821866 24883 chr7 142458443 142458443 1 + G T HNSC 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGTGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.434488752195442 1 0.559301793575287 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458443 synonymous SNV . 0 18 hm5C_associated_SNPs_24102 0 0 0 0 1 Cytosol 1 0.500231811904684 0.881396412849426 0.999536376190631 hm5C_site_24883 DeepMRMD:0.881396412849426;iRNA_m5C:0.999536376190631 24884 chr7 142458443 142458443 1 + G T HNSC 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGTGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.175047912329768 1 0.14261069893837 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458443 synonymous SNV . 0 15 hm5C_associated_SNPs_24103 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_24884 DeepMRMD:1;iRNA_m5C:0.999536712157814 24885 chr7 142458443 142458443 1 + G T HNSC 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGTGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.347841406882195 1 0.378567934036255 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458443 synonymous SNV . 0 12 hm5C_associated_SNPs_24104 0 0 0 0 1 Cytosol 1 0.500232620846311 1 0.999534758307379 hm5C_site_24885 DeepMRMD:1;iRNA_m5C:0.999534758307379 24886 chr19 19638864 19638864 1 + G T HNSC 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCCGCTGGGTGCCCCCCTTGATCTGGGAGCTG < 41bp 1 0.1476775072338 1 0.0333397090435028 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638864 nonsynonymous SNV 0.000 3 33 hm5C_associated_SNPs_24105 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_24886 DeepMRMD:1;iRNA_m5C:0.999536712157815 24887 chr2 201499611 201499611 1 + G A HNSC 201499618 + 201499598 201499638 41 TGGATGTCTACGTGTCCACACAGTTTCCCAAATATATACAG TGGATGTCTACGTATCCACACAGTTTCCCAAATATATACAG < 41bp 1 0.182161501189646 1 0.0618733763694763 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201499618 chr2:201499611 synonymous SNV . 0 14 hm5C_associated_SNPs_24106 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921159 1 0.999536712157682 hm5C_site_24887 DeepMRMD:1;iRNA_m5C:0.999536712157682 24888 chr1 43911887 43911887 1 + G A HNSC 43911903 + 43911883 43911923 41 CAGCGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGC CAGCAGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGC < 41bp 1 0.1019077084259 1 0.115006387233734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911903 chr1:43911887 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_24107 0 0 0 0 2 Cytosol 1 0.500231644709121 1 0.999536710581757 hm5C_site_24888 DeepMRMD:1;iRNA_m5C:0.999536710581757 24889 chr1 43911887 43911887 1 + G A HNSC 43911906 + 43911886 43911926 41 CGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATT CAGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATT < 41bp 1 0.0440696893351947 1 0.0844070613384247 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911906 chr1:43911887 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_24108 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24889 DeepMRMD:1;iRNA_m5C:0.999536712157815 24890 chr2 189852852 189852852 1 + G T HNSC 189852859 + 189852839 189852879 41 ATCTGGTCATCCTGGTTCCCCTGTAAGTATAGCCATTGGTG ATCTGGTCATCCTTGTTCCCCTGTAAGTATAGCCATTGGTG < 41bp 1 0.301439399257169 1 0.14835113286972 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189852859 chr2:189852852 nonsynonymous SNV 0.992 5 14 hm5C_associated_SNPs_24109 0 0 0 0 2 Endoplasmic reticulum 1 0.50023197269008 1 0.99953605461984 hm5C_site_24890 DeepMRMD:1;iRNA_m5C:0.99953605461984 24891 chr22 51143509 51143509 1 + G T HNSC 51143513 + 51143493 51143533 41 GAAGCCAGAAGAGGACGGGGCTCGGCGCAGAGGTGAGGGGT GAAGCCAGAAGAGGACTGGGCTCGGCGCAGAGGTGAGGGGT < 41bp 1 0.373366256390312 1 0.646991193294525 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143513 chr22:51143509 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_24110 0 0 1 0 1 cytosol 1 0.500231643921092 0.70601761341095 0.999536712157815 hm5C_site_24891 DeepMRMD:0.70601761341095;iRNA_m5C:0.999536712157815 24892 chr1 2160689 2160689 1 + A T HNSC 2160685 + 2160665 2160705 41 ACGGCCGACCAGCTGGAGATCCTCAAAGTCATGGGCATCCT ACGGCCGACCAGCTGGAGATCCTCTAAGTCATGGGCATCCT < 41bp 1 0.0663405792662492 1 0.0165040194988251 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKI ENSG00000157933 CDS Human protein_coding chr1:2160685 chr1:2160689 stopgain 1.000 1 25 hm5C_associated_SNPs_24111 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24892 DeepMRMD:1;iRNA_m5C:0.999536712157815 24893 chr19 990234 990234 1 + C A HNSC 990252 + 990232 990272 41 GGCCGACCCCTCCAGGATTCCGGCGCCCAGGCACGTCTGGT GGACGACCCCTCCAGGATTCCGGCGCCCAGGCACGTCTGGT < 41bp 1 0.607696863022415 1 0.855179309844971 experiment 0.784606273955171 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR18 ENSG00000065268 CDS Human protein_coding chr19:990252 chr19:990234 nonsynonymous SNV 0.723 0 3 hm5C_associated_SNPs_24112 0 0 1 0 0 Ribosome 1 0.500231642299388 0.289641380310058 0.999536715401223 hm5C_site_24893 DeepMRMD:0.289641380310058;iRNA_m5C:0.999536715401223 24894 chr7 101837129 101837129 1 + A T HNSC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGTAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA < 41bp 1 0.0235395802024589 1 0.420168817043304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837129 stopgain 0.999 1 3 hm5C_associated_SNPs_24113 0 0 1 0 2 Exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_24894 DeepMRMD:1;iRNA_m5C:0.999536712157815 24895 chr7 101837129 101837129 1 + A T HNSC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GTAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC < 41bp 1 0.088739750689234 1 0.396250307559967 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837129 stopgain 0.999 1 2 hm5C_associated_SNPs_24114 0 0 1 0 2 Exosome 1 0.500231654234154 1 0.999536691531692 hm5C_site_24895 DeepMRMD:1;iRNA_m5C:0.999536691531692 24896 chr9 120476539 120476539 1 + C A HNSC 120476528 + 120476508 120476548 41 CTCCATTTCAGCTCTGCCTTCACTACAGAGACTTTATTCCC CTCCATTTCAGCTCTGCCTTCACTACAGAGAATTTATTCCC < 41bp 1 0.441446338610196 1 0.266230821609497 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TLR4 ENSG00000136869 CDS Human protein_coding chr9:120476528 chr9:120476539 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_24115 0 0 0 0 0 cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_24896 DeepMRMD:1;iRNA_m5C:0.999536712157808 24897 chr14 24546877 24546877 1 + G A HNSC 24546874 + 24546854 24546894 41 TGGTGGAGTACTACGCCAGCCAGGGCATCAGCCCTGGGGCT TGGTGGAGTACTACGCCAGCCAGAGCATCAGCCCTGGGGCT < 41bp 1 0.625458993560126 1 0.746725857257843 experiment 0.749082012879747 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24546874 chr14:24546877 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_24117 0 0 0 0 2 exosome 1 0.500231704194201 0.506548285484314 0.999536591611597 hm5C_site_24897 DeepMRMD:0.506548285484314;iRNA_m5C:0.999536591611597 24898 chr3 47041666 47041666 1 + C A HNSC 47041673 + 47041653 47041693 41 CCTTTGACCTGGGCCTGGAACGGTCTAGTGTAGGATCAGGC CCTTTGACCTGGGACTGGAACGGTCTAGTGTAGGATCAGGC < 41bp 1 0.100598158853792 1 0.521283447742462 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041673 chr3:47041666 synonymous SNV . 0 14 hm5C_associated_SNPs_24118 0 0 0 0 0 Nucleus 1 0.500231643921092 0.957433104515076 0.999536712157815 hm5C_site_24898 DeepMRMD:0.957433104515076;iRNA_m5C:0.999536712157815 24899 chr12 53776193 53776193 1 + C T HNSC 53776180 + 53776160 53776200 41 TGGTGGGCAGTATGTTGTGGCTGCCGCTCCCAACTTACAGA TGGTGGGCAGTATGTTGTGGCTGCCGCTCCCAATTTACAGA < 41bp 1 0.232838879200305 1 0.0288407802581787 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SP1 ENSG00000185591 CDS Human protein_coding chr12:53776180 chr12:53776193 synonymous SNV . 0 34 hm5C_associated_SNPs_24119 0 0 1 0 0 Nucleus 1 0.500231643921189 1 0.999536712157622 hm5C_site_24899 DeepMRMD:1;iRNA_m5C:0.999536712157622 24900 chr11 61503242 61503242 1 + A T HNSC 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGTGCG < 41bp 1 0.238778457177013 1 0.0560286939144135 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503242 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_24121 0 0 1 0 2 Endoplasmic reticulum 1 0.500231646077232 1 0.999536707845535 hm5C_site_24900 DeepMRMD:1;iRNA_m5C:0.999536707845535 24901 chr20 37144953 37144953 1 + C T HNSC 37144939 + 37144919 37144959 41 GCAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC GCAAGAATTGAATCAGTATCCCTGCCTTAAACATTTGCCTC < 41bp 1 0.128202779232931 1 0.21642878651619 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37144939 chr20:37144953 synonymous SNV . 0 35 hm5C_associated_SNPs_24122 0 0 1 0 1 Nucleus 1 0.50023164377693 1 0.999536712446139 hm5C_site_24901 DeepMRMD:1;iRNA_m5C:0.999536712446139 24902 chr3 5215724 5215724 1 + G C HNSC 5215729 + 5215709 5215749 41 TGCTTGGAAACAAGAGAGATCTTCCTAATGCCTTGGATGAG TGCTTGGAAACAAGACAGATCTTCCTAATGCCTTGGATGAG < 41bp 1 0.0922037090342654 1 0.130713164806366 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARL8B ENSG00000134108 CDS Human protein_coding chr3:5215729 chr3:5215724 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_24124 0 0 1 0 2 Ribosome 1 0.500231644429757 1 0.999536711140486 hm5C_site_24902 DeepMRMD:1;iRNA_m5C:0.999536711140486 24903 chr12 6976707 6976707 1 + C T HNSC 6976702 + 6976682 6976722 41 GCCGCGACTGCGCGCAGACACTGACCTTCAGCGCCTCGGCT GCCGCGACTGCGCGCAGACACTGACTTTCAGCGCCTCGGCT < 41bp 1 0.570171862702933 1 0.034674197435379 experiment 0.859656274594135 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6976702 chr12:6976707 nonsynonymous SNV 0.811 0 26 hm5C_associated_SNPs_24125 0 0 1 0 0 Ribosome 1 0.50023164392482 1 0.99953671215036 hm5C_site_24903 DeepMRMD:1;iRNA_m5C:0.99953671215036 24904 chr9 137328333 137328333 1 + G A HNSC 137328316 + 137328296 137328336 41 AGACCTGTTCCCTGCAGGTTCGCTAAGCTCTTGCTCCGCCT AGACCTGTTCCCTGCAGGTTCGCTAAGCTCTTGCTCCACCT < 41bp 1 0.378904086208725 1 0.139027386903763 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RXRA ENSG00000186350 CDS Human protein_coding chr9:137328316 chr9:137328333 nonsynonymous SNV 0.926 5 38 hm5C_associated_SNPs_24126 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24904 DeepMRMD:1;iRNA_m5C:0.999536712157815 24905 chr1 41228713 41228713 1 + A T HNSC 41228706 + 41228686 41228726 41 ATCACTAACACAGGAGAGATCCAGCAGATCCCGGTGAGTCC ATCACTAACACAGGAGAGATCCAGCAGTTCCCGGTGAGTCC < 41bp 1 0.298879195164519 1 0.13390326499939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFYC ENSG00000066136 CDS Human protein_coding chr1:41228706 chr1:41228713 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_24127 0 0 1 0 2 Ribosome 1 0.500231644829381 1 0.999536710341238 hm5C_site_24905 DeepMRMD:1;iRNA_m5C:0.999536710341238 24906 chr7 142458445 142458445 1 + G A HNSC 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATGACAAGATCGTTGGGGACTACAA < 41bp 1 0.67392282913901 1 0.36146667599678 experiment 0.65215434172198 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458445 nonsynonymous SNV 0.050 5 35 hm5C_associated_SNPs_24128 0 0 0 0 1 Cytosol 1 0.500231643921277 1 0.999536712157447 hm5C_site_24906 DeepMRMD:1;iRNA_m5C:0.999536712157447 24907 chr7 142458445 142458445 1 + G A HNSC 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTGGGGACTACAACTGTGA < 41bp 1 0.196153615743697 1 0.116726905107498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458445 nonsynonymous SNV 0.050 5 29 hm5C_associated_SNPs_24129 0 0 0 0 1 Cytosol 1 0.500231643921029 1 0.999536712157942 hm5C_site_24907 DeepMRMD:1;iRNA_m5C:0.999536712157942 24908 chr7 142458445 142458445 1 + G A HNSC 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGACTACAACTGTGAGGAGAATTC < 41bp 1 0.365952261021131 1 0.329907894134521 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458445 nonsynonymous SNV 0.050 5 20 hm5C_associated_SNPs_24130 0 0 0 0 1 Cytosol 1 0.500231689548388 1 0.999536620903224 hm5C_site_24908 DeepMRMD:1;iRNA_m5C:0.999536620903224 24909 chr7 142458445 142458445 1 + G A HNSC 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGACTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.205499511608774 1 0.158102303743362 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458445 nonsynonymous SNV 0.050 5 17 hm5C_associated_SNPs_24131 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24909 DeepMRMD:1;iRNA_m5C:0.999536712157815 24910 chr7 142458445 142458445 1 + G A HNSC 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGACTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.353248064412058 1 0.213420689105988 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458445 nonsynonymous SNV 0.050 5 14 hm5C_associated_SNPs_24132 0 0 0 0 1 Cytosol 1 0.50023241914216 1 0.999535161715681 hm5C_site_24910 DeepMRMD:1;iRNA_m5C:0.999535161715681 24911 chr11 62656109 62656109 1 + C T HNSC 62656090 + 62656070 62656110 41 CAGCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAACG CAGCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAATG < 41bp 1 0.309473712767904 1 0.346596837043762 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62656090 chr11:62656109 nonsynonymous SNV 0.010 2 40 hm5C_associated_SNPs_24133 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24911 DeepMRMD:1;iRNA_m5C:0.999536712157815 24912 chr11 62656109 62656109 1 + C T HNSC 62656092 + 62656072 62656112 41 GCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAACGCC GCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAATGCC < 41bp 1 0.333323532613618 1 0.0241070687770844 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62656092 chr11:62656109 nonsynonymous SNV 0.010 2 38 hm5C_associated_SNPs_24134 0 0 1 0 0 Nucleus 1 0.500231643921097 1 0.999536712157806 hm5C_site_24912 DeepMRMD:1;iRNA_m5C:0.999536712157806 24913 chr19 47491269 47491269 1 + C T HNSC 47491265 + 47491245 47491285 41 GGACTGAGCACGGAAGGCATCTACCGGGTCAGCGGGAACAA GGACTGAGCACGGAAGGCATCTACTGGGTCAGCGGGAACAA < 41bp 1 0.436634348605364 1 0.305013000965118 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491265 chr19:47491269 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_24135 0 0 1 0 2 Ribosome 1 0.500231643939062 1 0.999536712121875 hm5C_site_24913 DeepMRMD:1;iRNA_m5C:0.999536712121875 24914 chr19 47491269 47491269 1 + C T HNSC 47491274 + 47491254 47491294 41 ACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGAT ACGGAAGGCATCTACTGGGTCAGCGGGAACAAGTCTGAGAT < 41bp 1 0.589623307780199 1 0.749020218849182 experiment 0.820753384439602 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491274 chr19:47491269 nonsynonymous SNV 0.994 4 16 hm5C_associated_SNPs_24137 0 0 1 0 2 Ribosome 1 0.500231643921092 0.501959562301636 0.999536712157815 hm5C_site_24914 DeepMRMD:0.501959562301636;iRNA_m5C:0.999536712157815 24915 chr19 47491269 47491269 1 + C T HNSC 47491283 + 47491263 47491303 41 ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT ATCTACTGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT < 41bp 1 0.341536179112816 1 0.249667048454285 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491283 chr19:47491269 nonsynonymous SNV 0.994 4 7 hm5C_associated_SNPs_24138 0 0 1 0 2 Ribosome 1 0.500231644104547 1 0.999536711790905 hm5C_site_24915 DeepMRMD:1;iRNA_m5C:0.999536711790905 24916 chr10 51581333 51581333 1 + T C HNSC 51581313 + 51581293 51581333 41 CTGAAGATTCAACTGTCCTGCTCTTTGAAGCTGACACAATT CTGAAGATTCAACTGTCCTGCTCTTTGAAGCTGACACAATC < 41bp 1 0.199666517448734 1 0.0465018749237061 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCOA4 ENSG00000138293 CDS Human other chr10:51581313 chr10:51581333 synonymous SNV . 0 41 hm5C_associated_SNPs_24140 0 0 1 0 2 Cytosol 1 0.500231643383964 1 0.999536713232072 hm5C_site_24916 DeepMRMD:1;iRNA_m5C:0.999536713232072 24917 chr15 64967739 64967739 1 + G A HNSC 64967735 + 64967715 64967755 41 GACTCACCATATTACCAAGGCTTTGAGAGTTACTATTCTCC GACTCACCATATTACCAAGGCTTTAAGAGTTACTATTCTCC < 41bp 1 0.0275234018614163 1 0.146707624197006 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF609 ENSG00000180357 CDS Human protein_coding chr15:64967735 chr15:64967739 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_24141 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24917 DeepMRMD:1;iRNA_m5C:0.999536712157815 24918 chr2 197583259 197583259 1 + G T HNSC 197583260 + 197583240 197583280 41 TTGAAAGAAGTAAAGAGGAGCTGTCCCGAACAGTGAAGTGT TTGAAAGAAGTAAAGAGGATCTGTCCCGAACAGTGAAGTGT < 41bp 1 0.0701315380669585 1 0.1573865711689 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197583260 chr2:197583259 nonsynonymous SNV 0.437 3 20 hm5C_associated_SNPs_24142 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921588 1 0.999536712156823 hm5C_site_24918 DeepMRMD:1;iRNA_m5C:0.999536712156823 24919 chr2 101188229 101188229 1 + G A HNSC 101188212 + 101188192 101188232 41 TGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTCTGGTG TGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTCTAGTG < 41bp 1 0.409800577485289 1 0.380374938249588 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101188212 chr2:101188229 synonymous SNV . 0 38 hm5C_associated_SNPs_24143 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24919 DeepMRMD:1;iRNA_m5C:0.999536712157815 24920 chr20 47639640 47639640 1 + G T HNSC 47639658 + 47639638 47639678 41 TTGATACAGACCATTGACAACATTGTGTTCTACCCTGCGAC TTTATACAGACCATTGACAACATTGTGTTCTACCCTGCGAC < 41bp 1 0.118562497535919 1 0.104647129774094 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47639658 chr20:47639640 nonsynonymous SNV 0.998 4 3 hm5C_associated_SNPs_24144 0 0 1 0 2 Cytosol 1 0.500231643921085 1 0.999536712157829 hm5C_site_24920 DeepMRMD:1;iRNA_m5C:0.999536712157829 24921 chr22 24718349 24718349 1 + C T HNSC 24718365 + 24718345 24718385 41 TCCGCTCTCTTCTAGATGAGCATCACATTTCTTATGTCATA TCCGTTCTCTTCTAGATGAGCATCACATTTCTTATGTCATA < 41bp 1 0.0976372583166977 1 0.041659414768219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPECC1L ENSG00000100014;ENSG00000258555 CDS Human other chr22:24718365 chr22:24718349 synonymous SNV . 0 5 hm5C_associated_SNPs_24145 0 0 1 0 0 Cytosol 1 0.500231633468242 1 0.999536733063516 hm5C_site_24921 DeepMRMD:1;iRNA_m5C:0.999536733063516 24922 chr5 176524631 176524631 1 + C T HNSC 176524624 + 176524604 176524644 41 ATTCTGTCTTCAGCCACGACCCCCTGCCATTGGGATCCAGC ATTCTGTCTTCAGCCACGACCCCCTGCTATTGGGATCCAGC < 41bp 1 0.13633856370058 1 0.0476216077804565 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524624 chr5:176524631 nonsynonymous SNV 0.243 1 28 hm5C_associated_SNPs_24146 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920488 1 0.999536712159023 hm5C_site_24922 DeepMRMD:1;iRNA_m5C:0.999536712159023 24923 chr5 176524631 176524631 1 + C T HNSC 176524627 + 176524607 176524647 41 CTGTCTTCAGCCACGACCCCCTGCCATTGGGATCCAGCTCC CTGTCTTCAGCCACGACCCCCTGCTATTGGGATCCAGCTCC < 41bp 1 0.397475973419643 1 0.0631245374679565 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524627 chr5:176524631 nonsynonymous SNV 0.243 1 25 hm5C_associated_SNPs_24147 0 0 1 0 0 Endoplasmic reticulum 1 0.500231633559215 1 0.99953673288157 hm5C_site_24923 DeepMRMD:1;iRNA_m5C:0.99953673288157 24924 chr22 42033722 42033722 1 + G C HNSC 42033729 + 42033709 42033749 41 CAGGGTTCACTTTGAGGAATCCAGCAAGCTAGAAGACCTGT CAGGGTTCACTTTCAGGAATCCAGCAAGCTAGAAGACCTGT < 41bp 1 0.194433512904386 1 0.162341594696045 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42033729 chr22:42033722 nonsynonymous SNV 0.989 1 14 hm5C_associated_SNPs_24148 0 0 1 0 1 Cytosol 1 0.50023164389885 1 0.9995367122023 hm5C_site_24924 DeepMRMD:1;iRNA_m5C:0.9995367122023 24925 chr17 7483866 7483866 1 + C T HNSC 7483883 + 7483863 7483903 41 TCTCATTCCCCTATGGACACCTCAGCTTTGGATTCATGCAG TCTTATTCCCCTATGGACACCTCAGCTTTGGATTCATGCAG < 41bp 1 0.406035231476967 1 0.139985173940659 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD68 ENSG00000129226 CDS Human protein_coding chr17:7483883 chr17:7483866 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_24149 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920919 1 0.999536712158163 hm5C_site_24925 DeepMRMD:1;iRNA_m5C:0.999536712158163 24926 chr20 398533 398533 1 + C G HNSC 398525 + 398505 398545 41 CTGTCAGCCCGCAACACCTCCCTCAACCCTCAGGAGCTGCA CTGTCAGCCCGCAACACCTCCCTCAACCGTCAGGAGCTGCA < 41bp 1 0.121486574446236 1 0.121772825717926 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBCK1 ENSG00000125826 CDS Human protein_coding chr20:398525 chr20:398533 nonsynonymous SNV 0.997 0 29 hm5C_associated_SNPs_24150 0 0 1 1 1 Ribosome 1 0.500231356789161 1 0.999537286421677 hm5C_site_24926 DeepMRMD:1;iRNA_m5C:0.999537286421677 24927 chr14 105181075 105181075 1 + C A HNSC 105181057 + 105181037 105181077 41 GCCCCAGAGTCCGCACTGGACACATCCCTGGACAAGTCCTT GCCCCAGAGTCCGCACTGGACACATCCCTGGACAAGTCATT < 41bp 1 0.161988558294978 1 0.0135237574577332 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105181057 chr14:105181075 synonymous SNV . 0 39 hm5C_associated_SNPs_24151 0 0 1 0 0 Cytosol 1 0.500231133507758 1 0.999537732984483 hm5C_site_24927 DeepMRMD:1;iRNA_m5C:0.999537732984483 24928 chr4 126337709 126337709 1 + G T HNSC 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT TAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT < 41bp 1 0.611815807278777 1 0.936482608318329 experiment 0.776368385442446 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337709 nonsynonymous SNV 0.698 0 1 hm5C_associated_SNPs_24152 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920994 0.127034783363342 0.999536712158012 hm5C_site_24928 DeepMRMD:0.127034783363342;iRNA_m5C:0.999536712158012 24929 chr16 88601287 88601287 1 + G C HNSC 88601291 + 88601271 88601311 41 CCCAACGGCAACCACCGGTACTGCCGTCTTTGCAACATCAA CCCAACGGCAACCACCCGTACTGCCGTCTTTGCAACATCAA < 41bp 1 0.174956166965023 1 0.128491014242172 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88601291 chr16:88601287 nonsynonymous SNV 0.568 3 17 hm5C_associated_SNPs_24153 0 0 1 0 0 chromatin 1 0.50023164392108 1 0.999536712157841 hm5C_site_24929 DeepMRMD:1;iRNA_m5C:0.999536712157841 24930 chrX 70776891 70776891 1 + C T HNSC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTATATGCGTGCCATCCAAATTAATCCT < 41bp 1 0.211012405390125 1 0.056756466627121 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776891 nonsynonymous SNV 0.989 3 19 hm5C_associated_SNPs_24154 0 0 1 0 2 Nucleus 1 0.50021148474468 1 0.99957703051064 hm5C_site_24930 DeepMRMD:1;iRNA_m5C:0.99957703051064 24931 chr4 7533275 7533275 1 + G A HNSC 7533294 + 7533274 7533314 41 CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC CATCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC < 41bp 1 0.574069534511272 1 0.972537219524384 experiment 0.851860930977456 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7533294 chr4:7533275 synonymous SNV . 0 2 hm5C_associated_SNPs_24155 0 0 0 0 2 nucleus 1 0.500231643913537 0.054925560951232 0.999536712172925 hm5C_site_24931 DeepMRMD:0.054925560951232;iRNA_m5C:0.999536712172925 24932 chr10 105174888 105174888 1 + G T HNSC 105174899 + 105174879 105174919 41 TACCACATCGGGGATGAGGTCAAGTGCCGGGTGAGCCTCCT TACCACATCTGGGATGAGGTCAAGTGCCGGGTGAGCCTCCT < 41bp 1 0.464265265283054 1 0.786069571971893 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105174899 chr10:105174888 nonsynonymous SNV 0.436 4 10 hm5C_associated_SNPs_24156 0 0 1 0 1 Nucleus 1 0.50023164357439 0.427860856056214 0.99953671285122 hm5C_site_24932 DeepMRMD:0.427860856056214;iRNA_m5C:0.99953671285122 24933 chr13 48832958 48832958 1 + A G HNSC 48832941 + 48832921 48832961 41 TTCTGAATGTAGGCTGGAACCTATTTGCCTCAGTCCTATCT TTCTGAATGTAGGCTGGAACCTATTTGCCTCAGTCCTGTCT < 41bp 1 0.479433371405247 1 0.0283579230308533 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITM2B ENSG00000136156 CDS Human protein_coding chr13:48832941 chr13:48832958 nonsynonymous SNV 0.977 3 38 hm5C_associated_SNPs_24157 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_24933 DeepMRMD:1;iRNA_m5C:0.999536712157816 24934 chr16 27642470 27642470 1 + G A HNSC 27642481 + 27642461 27642501 41 TCCAGCGCCGAGGATGGCACCAGGTCTGGAGACTGTGGCCC TCCAGCGCCAAGGATGGCACCAGGTCTGGAGACTGTGGCCC < 41bp 1 0.540172726989613 1 0.413510024547577 experiment 0.919654546020774 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27642481 chr16:27642470 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_24158 0 0 1 0 2 Nucleus 1 0.50023150701758 1 0.99953698596484 hm5C_site_24934 DeepMRMD:1;iRNA_m5C:0.99953698596484 24935 chr16 53338091 53338091 1 + C G HNSC 53338084 + 53338064 53338104 41 GTGAAAACCTTAAAGAGGAGCCTCAGTCTTCTGAAGAAGAA GTGAAAACCTTAAAGAGGAGCCTCAGTGTTCTGAAGAAGAA < 41bp 1 0.0418026157497349 1 0.0845789015293121 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CHD9 ENSG00000177200 CDS Human protein_coding chr16:53338084 chr16:53338091 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_24159 0 0 1 0 0 Ribosome 1 0.500232455587254 1 0.999535088825491 hm5C_site_24935 DeepMRMD:1;iRNA_m5C:0.999535088825491 24936 chr5 140731304 140731304 1 + G A HNSC 140731316 + 140731296 140731336 41 GTGACCTGGAGCCGCGGGAGCTGTTGTCCTACGTGTCCGTG GTGACCTGAAGCCGCGGGAGCTGTTGTCCTACGTGTCCGTG < 41bp 1 0.185999255776704 1 0.0977763235569 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHGB1 ENSG00000254221 CDS Human protein_coding chr5:140731316 chr5:140731304 nonsynonymous SNV 0.189 0 9 hm5C_associated_SNPs_24160 0 0 1 0 0 exosome 1 0.500231643923655 1 0.99953671215269 hm5C_site_24936 DeepMRMD:1;iRNA_m5C:0.99953671215269 24937 chr17 66526546 66526546 1 + C T HNSC 66526558 + 66526538 66526578 41 TCCTCAAACGAAACATCCAGCAGTACAACAGTTTTGTGTCA TCCTCAAATGAAACATCCAGCAGTACAACAGTTTTGTGTCA < 41bp 1 0.512513127146331 1 0.854114294052124 experiment 0.974973745707337 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66526558 chr17:66526546 stopgain 0.998 1 9 hm5C_associated_SNPs_24161 1 0 1 0 0 Ribosome 1 0.500231643288377 0.291771411895752 0.999536713423247 hm5C_site_24937 DeepMRMD:0.291771411895752;iRNA_m5C:0.999536713423247 Acrodysostosis 1 with or without hormone resistance Acrodysostosis 1 with or without hormone resistance 24938 chr22 18979485 18979485 1 + A G HNSC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAGC < 41bp 1 0.111858105173061 1 0.0705478191375732 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979485 . . 0 40 hm5C_associated_SNPs_24162 0 0 1 2 1 unknown 1 0.50023125440989 1 0.999537491180219 hm5C_site_24938 DeepMRMD:1;iRNA_m5C:0.999537491180219 24939 chr3 170078459 170078459 1 + G C HNSC 170078471 + 170078451 170078491 41 ATTCCCAAGAAAGCATGTCGCCTACTGTATTTCTGCCTCTT ATTCCCAACAAAGCATGTCGCCTACTGTATTTCTGCCTCTT < 41bp 1 0.100732584696259 1 0.0294071733951569 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170078471 chr3:170078459 nonsynonymous SNV 0.994 5 9 hm5C_associated_SNPs_24163 0 0 1 0 0 Nucleus 1 0.500231643921008 1 0.999536712157984 hm5C_site_24939 DeepMRMD:1;iRNA_m5C:0.999536712157984 24940 chrX 73046762 73046762 1 + A T HNSC 73046754 - 73046734 73046774 41 GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA GTTGGATGGAAGACTCAAGGCTTGAGTTAGAAGTCTTAAGA < 41bp 1 0.541680701842215 1 0.167009323835373 experiment 0.916638596315569 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046754 chrX:73046762 . . 0 13 hm5C_associated_SNPs_24164 0 0 1 0 0 unknown 1 0.500231643924535 1 0.99953671215093 hm5C_site_24940 DeepMRMD:1;iRNA_m5C:0.99953671215093 24941 chrX 73046762 73046762 1 + A T HNSC 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGACTC < 41bp 1 0.362499516791005 1 0.474647849798203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046762 . . 0 38 hm5C_associated_SNPs_24165 0 0 1 0 0 unknown 1 0.500231643920296 1 0.999536712159409 hm5C_site_24941 DeepMRMD:1;iRNA_m5C:0.999536712159409 24942 chr14 53175510 53175510 1 + A T HNSC 53175498 + 53175478 53175518 41 CTAGTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGT CTAGTCATTGTTAAAGCTACCAATGGACCAAGTTATGTTGT < 41bp 1 0.185572770814402 1 0.52203094959259 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53175498 chr14:53175510 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_24166 0 0 1 0 2 Ribosome 1 0.500231643921526 0.95593810081482 0.999536712156948 hm5C_site_24942 DeepMRMD:0.95593810081482;iRNA_m5C:0.999536712156948 24943 chr1 150445676 150445676 1 + C T HNSC 150445667 + 150445647 150445687 41 GCCGGAGTGGTATAATCTTACGGAGTCCCCGGCCAGACTTT GCCGGAGTGGTATAATCTTACGGAGTCCCTGGCCAGACTTT < 41bp 1 0.621425187022096 1 0.910336494445801 experiment 0.757149625955807 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150445667 chr1:150445676 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_24167 0 0 1 0 0 Cytosol 1 0.500231643921093 0.179327011108398 0.999536712157815 hm5C_site_24943 DeepMRMD:0.179327011108398;iRNA_m5C:0.999536712157815 24944 chr11 46387882 46387882 1 + G A HNSC 46387881 + 46387861 46387901 41 GGGCAGCAGCGGCCCAGCAGCGTGGGGCTGCCCACAGGCAA GGGCAGCAGCGGCCCAGCAGCATGGGGCTGCCCACAGGCAA < 41bp 1 0.698497402090656 1 0.696611225605011 experiment 0.603005195818688 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46387881 chr11:46387882 nonsynonymous SNV 0.250 0 22 hm5C_associated_SNPs_24169 0 0 1 0 1 Ribosome 1 0.500231643921092 0.606777548789978 0.999536712157815 hm5C_site_24944 DeepMRMD:0.606777548789978;iRNA_m5C:0.999536712157815 24945 chr1 117631445 117631445 1 + G A HNSC 117631430 + 117631410 117631450 41 GTGATTCTTCCAGGGCACCTCAACACCTTTGCTTCGAATAG GTGATTCTTCCAGGGCACCTCAACACCTTTGCTTCAAATAG < 41bp 1 0.542281491538116 1 0.3409583568573 experiment 0.915437016923768 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117631430 chr1:117631445 nonsynonymous SNV 0.978 1 36 hm5C_associated_SNPs_24170 0 0 1 0 1 Nucleus 1 0.500231643942613 1 0.999536712114773 hm5C_site_24945 DeepMRMD:1;iRNA_m5C:0.999536712114773 24946 chr6 41557787 41557787 1 + G A HNSC 41557781 + 41557761 41557801 41 TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGC TTCCCAGATGGTCTCGTGCACCCCCCAACCTCGGCCGCAGC < 41bp 1 0.118734376192792 1 0.0396743416786194 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557781 chr6:41557787 synonymous SNV . 0 27 hm5C_associated_SNPs_24172 0 0 1 0 2 Nucleus 1 0.500231562586339 1 0.999536874827323 hm5C_site_24946 DeepMRMD:1;iRNA_m5C:0.999536874827323 24947 chr12 54394191 54394191 1 + G A HNSC 54394180 + 54394160 54394200 41 GCACGTCGTGGGCGCCCGTGCCCTCTCAGTCGTCCGTGGTA GCACGTCGTGGGCGCCCGTGCCCTCTCAGTCATCCGTGGTA < 41bp 1 0.176760366227172 1 0.0443659126758575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54394180 chr12:54394191 synonymous SNV . 0 32 hm5C_associated_SNPs_24173 0 0 1 0 0 chromatin 1 0.500230885693317 1 0.999538228613366 hm5C_site_24947 DeepMRMD:1;iRNA_m5C:0.999538228613366 24948 chr11 73068155 73068155 1 + C T HNSC 73068165 + 73068145 73068185 41 AAGTCAGGCTCCCTGCGGCGCAGCTCCATGAGCCTGTGAGT AAGTCAGGCTTCCTGCGGCGCAGCTCCATGAGCCTGTGAGT < 41bp 1 0.114202268048556 1 0.0458849370479584 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73068165 chr11:73068155 nonsynonymous SNV 0.991 4 11 hm5C_associated_SNPs_24174 0 0 1 0 2 Cytosol 1 0.50023164392107 1 0.99953671215786 hm5C_site_24948 DeepMRMD:1;iRNA_m5C:0.99953671215786 24949 chr11 67818101 67818101 1 + C A HNSC 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTAAGCCTTCCTGCACGCCCTGCGGC < 41bp 1 0.05531868723955 1 0.336641371250153 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818101 stopgain 0.986 1 18 hm5C_associated_SNPs_24175 0 0 1 0 1 Nucleus 1 0.500231643920461 1 0.999536712159079 hm5C_site_24949 DeepMRMD:1;iRNA_m5C:0.999536712159079 24950 chr11 67818101 67818101 1 + C A HNSC 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTAAGCCTTCCTGCACGCCCTGCGGCT < 41bp 1 0.152148252500449 1 0.398286253213882 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818101 stopgain 0.986 1 17 hm5C_associated_SNPs_24176 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_24950 DeepMRMD:1;iRNA_m5C:0.999536712157812 24951 chr1 78470899 78470899 1 + G C HNSC 78470892 + 78470872 78470912 41 ACAAGCCCTCAAATTTCATCCGGACAAGAACAAATCTCCTC ACAAGCCCTCAAATTTCATCCGGACAACAACAAATCTCCTC < 41bp 1 0.386576371062329 1 0.397860169410706 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJB4 ENSG00000162616 CDS Human protein_coding chr1:78470892 chr1:78470899 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_24178 0 0 1 0 0 nucleoplasm 1 0.500231577226043 1 0.999536845547915 hm5C_site_24951 DeepMRMD:1;iRNA_m5C:0.999536845547915 24952 chr1 38484941 38484941 1 + C T HNSC 38484930 + 38484910 38484950 41 TGTCTTGAATTTTAGTTGAACAGTTTGATGTCGCAACTCAC TGTCTTGAATTTTAGTTGAACAGTTTGATGTTGCAACTCAC < 41bp 1 0.24076123437915 1 0.0480068027973175 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP11 ENSG00000183520 CDS Human protein_coding chr1:38484930 chr1:38484941 synonymous SNV . 0 32 hm5C_associated_SNPs_24179 0 0 1 0 1 Ribosome 1 0.500233097794609 1 0.999533804410781 hm5C_site_24952 DeepMRMD:1;iRNA_m5C:0.999533804410781 24953 chr1 33957252 33957252 1 + C T HNSC 33957260 + 33957240 33957280 41 ATGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCA ATGTTGAGTCTATCCAGGGGCCCAGGATTGCAGGGGCCCCA < 41bp 1 0.24189688351206 1 0.0614194571971893 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957260 chr1:33957252 nonsynonymous SNV 0.004 0 13 hm5C_associated_SNPs_24180 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24953 DeepMRMD:1;iRNA_m5C:0.999536712157815 24954 chr1 33957252 33957252 1 + C T HNSC 33957261 + 33957241 33957281 41 TGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCAG TGTTGAGTCTATCCAGGGGCCCAGGATTGCAGGGGCCCCAG < 41bp 1 0.552383645212433 1 0.449267566204071 experiment 0.895232709575134 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957261 chr1:33957252 nonsynonymous SNV 0.004 0 12 hm5C_associated_SNPs_24181 0 0 1 0 1 exosome 1 0.500231643921084 1 0.999536712157832 hm5C_site_24954 DeepMRMD:1;iRNA_m5C:0.999536712157832 24955 chr19 58757773 58757773 1 + G A HNSC 58757778 + 58757758 58757798 41 TGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGTAAG TGACACTGGAGACCTAGGAGCATATTGTCTCCCTGGGTAAG < 41bp 1 0.210215588388385 1 0.0670055747032166 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58757778 chr19:58757773 stopgain 0.403 0 16 hm5C_associated_SNPs_24182 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24955 DeepMRMD:1;iRNA_m5C:0.999536712157815 24956 chr8 145151588 145151588 1 + C T HNSC 145151587 + 145151567 145151607 41 TCTACTTCAACCCCTACTTTCCTGGCCAGGCCATTGCCATG TCTACTTCAACCCCTACTTTCTTGGCCAGGCCATTGCCATG < 41bp 1 0.548706069677348 1 0.212844759225845 experiment 0.902587860645305 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151587 chr8:145151588 nonsynonymous SNV 0.980 2 22 hm5C_associated_SNPs_24183 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_24956 DeepMRMD:1;iRNA_m5C:0.999536712157815 24957 chr12 53516948 53516948 1 + C T HNSC 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTTGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT < 41bp 1 0.138824514597518 1 0.0341310501098633 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516948 synonymous SNV . 0 9 hm5C_associated_SNPs_24184 0 0 0 0 2 cytosol 1 0.500231643921085 1 0.999536712157829 hm5C_site_24957 DeepMRMD:1;iRNA_m5C:0.999536712157829 24958 chr18 48581281 48581281 1 + C G HNSC 48581284 + 48581264 48581304 41 GCATCGACAGAGACATACAGCACCCCAGCTCTGTTAGCCCC GCATCGACAGAGACATAGAGCACCCCAGCTCTGTTAGCCCC < 41bp 1 0.351275541932043 1 0.220367640256882 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48581284 chr18:48581281 stopgain 1.000 1 18 hm5C_associated_SNPs_24185 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24958 DeepMRMD:1;iRNA_m5C:0.999536712157815 24959 chr12 57619381 57619381 1 + G A HNSC 57619361 + 57619341 57619381 41 CCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACCG CCGACCGTGCCTGTACGACCCGTCGCAGGTGTGCTTCACCA < 41bp 1 0.418170251454752 1 0.143590122461319 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619361 chr12:57619381 nonsynonymous SNV 0.998 4 41 hm5C_associated_SNPs_24186 0 0 0 0 0 exosome 1 0.500646130044361 1 0.998707739911277 hm5C_site_24959 DeepMRMD:1;iRNA_m5C:0.998707739911277 24960 chr2 127453707 127453707 1 + T G HNSC 127453726 + 127453706 127453746 41 GTACTTTATTTGAGGGACAACAGACTTCACTTCCCTGAATG GGACTTTATTTGAGGGACAACAGACTTCACTTCCCTGAATG < 41bp 1 0.441232948236004 1 0.653250396251678 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GYPC ENSG00000136732 CDS Human protein_coding chr2:127453726 chr2:127453707 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_24187 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644002359 0.693499207496644 0.999536711995282 hm5C_site_24960 DeepMRMD:0.693499207496644;iRNA_m5C:0.999536711995282 24961 chrX 49853388 49853388 1 + G A HNSC 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CCTCTTTATCCCTAGCATGGCTATTGGTGCTATAGCAGGTC < 41bp 1 0.103298729435809 1 0.116210699081421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853388 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_24188 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_24961 DeepMRMD:1;iRNA_m5C:0.999536712157815 24962 chr11 65273602 65273602 1 + G A HNSC 65273607 + 65273587 65273627 41 AGATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTT AGATGCTGGTGGTTGACACTCCTGGTTTCCAGGACGGGGTT < 41bp 1 0.416762290653619 1 0.236274629831314 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273607 chr11:65273602 . . 0 16 hm5C_associated_SNPs_24189 0 0 0 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_24962 DeepMRMD:1;iRNA_m5C:0.999536712157815 24963 chr11 65273602 65273602 1 + G A HNSC 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGACACTCCTGGTTTCCAGGACGGGGTTC < 41bp 1 0.610524587228346 1 0.181198835372925 experiment 0.778950825543308 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273602 . . 0 15 hm5C_associated_SNPs_24190 0 0 0 1 0 unknown 1 0.500232176076668 1 0.999535647846665 hm5C_site_24963 DeepMRMD:1;iRNA_m5C:0.999535647846665 24964 chr9 116764924 116764924 1 + G T HNSC 116764935 + 116764915 116764955 41 ACCTCAGGGGAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT ACCTCAGGGTAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT < 41bp 1 0.260867445097314 1 0.416802167892456 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116764935 chr9:116764924 stopgain 1.000 1 10 hm5C_associated_SNPs_24191 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24964 DeepMRMD:1;iRNA_m5C:0.999536712157815 24965 chr4 123748456 123748456 1 + A T HNSC 123748458 + 123748438 123748478 41 GGGGGCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGA GGGGGCTTCTTCCTGCGCTTCCACCCCGACGGCCGAGTTGA < 41bp 1 0.132607948021073 1 0.0347273945808411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748458 chr4:123748456 nonsynonymous SNV 0.989 4 19 hm5C_associated_SNPs_24192 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_24965 DeepMRMD:1;iRNA_m5C:0.999536712157815 24966 chr12 120876216 120876216 1 + G T HNSC 120876203 + 120876183 120876223 41 TCGCATGTGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCG TCGCATGTGGAAGACTCTCACCTTCTTCGTCGCTCTCCCCG < 41bp 1 0.0965255873559682 1 0.0591717064380646 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX6A1 ENSG00000111775;ENSG00000111780 CDS Human other chr12:120876203 chr12:120876216 synonymous SNV . 0 34 hm5C_associated_SNPs_24194 0 0 1 0 1 Ribosome 1 0.500231643921079 1 0.999536712157843 hm5C_site_24966 DeepMRMD:1;iRNA_m5C:0.999536712157843 24967 chr12 120876216 120876216 1 + G T HNSC 120876210 + 120876190 120876230 41 TGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCGGGGTGGC TGGAAGACTCTCACCTTCTTCGTCGCTCTCCCCGGGGTGGC < 41bp 1 0.553877750007772 1 0.30914232134819 experiment 0.892244499984457 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX6A1 ENSG00000111775;ENSG00000111780 CDS Human other chr12:120876210 chr12:120876216 synonymous SNV . 0 27 hm5C_associated_SNPs_24195 0 0 1 0 1 Ribosome 1 0.500231643922848 1 0.999536712154305 hm5C_site_24967 DeepMRMD:1;iRNA_m5C:0.999536712154305 24968 chr4 126238150 126238150 1 + G T HNSC 126238148 + 126238128 126238168 41 GACATCACCCTGAACCCGAGCGGCGAGGGAGCGTTCCTGCA GACATCACCCTGAACCCGAGCGTCGAGGGAGCGTTCCTGCA < 41bp 1 0.161637893686324 1 0.406070321798325 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126238148 chr4:126238150 nonsynonymous SNV 0.987 3 23 hm5C_associated_SNPs_24196 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_24968 DeepMRMD:1;iRNA_m5C:0.999536712157815 24969 chr12 113730845 113730845 1 + G T HNSC 113730854 + 113730834 113730874 41 GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATA GTCACCAGGCTTCTGGAGACCCTCTCCCAGATGGAGAGATA < 41bp 1 0.0689098192760458 1 0.0435196161270142 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113730854 chr12:113730845 synonymous SNV . 0 12 hm5C_associated_SNPs_24197 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24969 DeepMRMD:1;iRNA_m5C:0.999536712157815 24970 chr13 99098961 99098961 1 + G A HNSC 99098975 + 99098955 99098995 41 CTACTCGCTCACCATCCCCTCTGAGTCCGAGAACATCCAGA CTACTCACTCACCATCCCCTCTGAGTCCGAGAACATCCAGA < 41bp 1 0.239125807690343 1 0.0542246699333191 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098975 chr13:99098961 synonymous SNV . 0 7 hm5C_associated_SNPs_24200 0 0 1 0 1 Cytosol 1 0.500231650005761 1 0.999536699988477 hm5C_site_24970 DeepMRMD:1;iRNA_m5C:0.999536699988477 24971 chr13 99098961 99098961 1 + G A HNSC 99098981 + 99098961 99099001 41 GCTCACCATCCCCTCTGAGTCCGAGAACATCCAGAAAGACT ACTCACCATCCCCTCTGAGTCCGAGAACATCCAGAAAGACT < 41bp 1 0.144439372574497 1 0.625325441360474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098981 chr13:99098961 synonymous SNV . 0 1 hm5C_associated_SNPs_24201 0 0 1 0 1 Cytosol 1 0.499027739101307 0.749349117279052 1 hm5C_site_24971 DeepMRMD:0.749349117279052;iRNA_m5C:1 24972 chr19 45573294 45573294 1 + G A HNSC 45573292 + 45573272 45573312 41 CTTCGCAGGGAGCGGGAACGCCGAGAGAAGGAGAGAGAAGA CTTCGCAGGGAGCGGGAACGCCAAGAGAAGGAGAGAGAAGA < 41bp 1 0.403198816891628 1 0.732563436031342 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLASRP ENSG00000104859 CDS Human protein_coding chr19:45573292 chr19:45573294 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_24203 0 0 1 0 2 chromatin 1 0.500231643920488 0.534873127937316 0.999536712159024 hm5C_site_24972 DeepMRMD:0.534873127937316;iRNA_m5C:0.999536712159024 24973 chr11 65273274 65273274 1 + C G HNSC 65273280 + 65273260 65273300 41 GTGACTAAAACCAACTTAAACCAGTAAGTGGAGAAATAACA GTGACTAAAACCAAGTTAAACCAGTAAGTGGAGAAATAACA < 41bp 1 0.531072917419446 1 0.125867784023285 experiment 0.937854165161108 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273280 chr11:65273274 . . 0 15 hm5C_associated_SNPs_24204 0 0 1 0 0 unknown 1 0.500231682523097 1 0.999536634953806 hm5C_site_24973 DeepMRMD:1;iRNA_m5C:0.999536634953806 24974 chr3 179104304 179104304 1 + G A HNSC 179104323 + 179104303 179104343 41 GGACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGTTT GAACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGTTT < 41bp 1 0.338165394772346 1 0.340585052967072 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFN1 ENSG00000171109 CDS Human protein_coding chr3:179104323 chr3:179104304 stopgain 0.973 1 2 hm5C_associated_SNPs_24206 0 0 1 0 1 Ribosome 1 0.500231643922059 1 0.999536712155881 hm5C_site_24974 DeepMRMD:1;iRNA_m5C:0.999536712155881 24975 chr3 179104303 179104303 1 + G A HNSC 179104323 + 179104303 179104343 41 GGACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGTTT AGACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGTTT < 41bp 1 0.350331901680518 1 0.27801924943924 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFN1 ENSG00000171109 CDS Human protein_coding chr3:179104323 chr3:179104303 stopgain 0.972 1 1 hm5C_associated_SNPs_24207 0 0 1 0 1 Ribosome 1 0.500231643926299 1 0.999536712147402 hm5C_site_24975 DeepMRMD:1;iRNA_m5C:0.999536712147402 24976 chr5 175933836 175933836 1 + C T HNSC 175933855 + 175933835 175933875 41 CCCAGGCGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGCC CTCAGGCGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGCC < 41bp 1 0.105753925011115 1 0.110507071018219 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAF2 ENSG00000113194 CDS Human protein_coding chr5:175933855 chr5:175933836 nonsynonymous SNV 0.997 4 2 hm5C_associated_SNPs_24209 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921151 1 0.999536712157698 hm5C_site_24976 DeepMRMD:1;iRNA_m5C:0.999536712157698 24977 chr12 19427805 19427805 1 + G A HNSC 19427793 + 19427773 19427813 41 CAGATCTTAGAGGTGGAAATCGCCCCAATACAGGGCCCTTA CAGATCTTAGAGGTGGAAATCGCCCCAATACAAGGCCCTTA < 41bp 1 0.40855091131739 1 0.307518184185028 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHA5 ENSG00000052126 CDS Human protein_coding chr12:19427793 chr12:19427805 nonsynonymous SNV 0.619 1 33 hm5C_associated_SNPs_24210 0 0 1 0 0 Nucleus 1 0.500231643921086 1 0.999536712157828 hm5C_site_24977 DeepMRMD:1;iRNA_m5C:0.999536712157828 24978 chrX 99920267 99920267 1 + C T HNSC 99920250 + 99920230 99920270 41 ATCTTGGCAGACATAGATCCCCCCAAGATCCGCTGTCCCCA ATCTTGGCAGACATAGATCCCCCCAAGATCCGCTGTCTCCA < 41bp 1 0.612763234449306 1 0.283730804920197 experiment 0.774473531101387 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99920250 chrX:99920267 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_24211 0 0 0 0 2 nucleus 1 0.500231643922322 1 0.999536712155356 hm5C_site_24978 DeepMRMD:1;iRNA_m5C:0.999536712155356 24979 chr17 16342695 16342695 1 + C T HNSC 16342711 + 16342691 16342731 41 CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA CGGCTCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA < 41bp 1 0.359319145714849 1 0.198888063430786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342711 chr17:16342695 . . 0 5 hm5C_associated_SNPs_24212 0 0 1 0 3 Nucleus 1 0.500231679524939 1 0.999536640950122 hm5C_site_24979 DeepMRMD:1;iRNA_m5C:0.999536640950122 24980 chr16 30941539 30941539 1 + C T HNSC 30941537 + 30941517 30941557 41 TCTTCCTCCTCGGACTCAGACTCCGACTCCGACTCTTCGGG TCTTCCTCCTCGGACTCAGACTTCGACTCCGACTCTTCGGG < 41bp 1 0.188126685042544 1 0.564145922660828 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30941537 chr16:30941539 nonsynonymous SNV 0.408 3 23 hm5C_associated_SNPs_24213 0 0 1 0 0 chromatin 1 0.500231643960196 0.871708154678344 0.999536712079608 hm5C_site_24980 DeepMRMD:0.871708154678344;iRNA_m5C:0.999536712079608 24981 chr7 98501139 98501139 1 + C T HNSC 98501140 + 98501120 98501160 41 TCACCACAGAGCTGAGAAACCGTACGTCCAGCCTGTCTTGT TCACCACAGAGCTGAGAAATCGTACGTCCAGCCTGTCTTGT < 41bp 1 0.132998924741235 1 0.114034652709961 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98501140 chr7:98501139 synonymous SNV . 0 20 hm5C_associated_SNPs_24214 0 0 1 0 1 Nucleus 1 0.500231643407568 1 0.999536713184864 hm5C_site_24981 DeepMRMD:1;iRNA_m5C:0.999536713184864 24982 chr6 25551232 25551232 1 + C T HNSC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCATCGAAAAGATTTCTAT < 41bp 1 0.521955522138118 1 0.35769909620285 experiment 0.956088955723763 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551232 nonsynonymous SNV 0.997 0 26 hm5C_associated_SNPs_24215 0 0 0 0 2 unknown 1 0.500231858242094 1 0.999536283515812 hm5C_site_24982 DeepMRMD:1;iRNA_m5C:0.999536283515812 24983 chr1 110754452 110754452 1 + C T HNSC 110754469 + 110754449 110754489 41 TACCGCACCGGCAAGCTGCACTGCCCCGCGGACGTGTGCGG TACTGCACCGGCAAGCTGCACTGCCCCGCGGACGTGTGCGG < 41bp 1 0.311805228782342 1 0.106403678655624 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110754469 chr1:110754452 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_24216 0 0 0 0 0 Nucleus 1 0.500231643921347 1 0.999536712157305 hm5C_site_24983 DeepMRMD:1;iRNA_m5C:0.999536712157305 24984 chr16 3458635 3458635 1 + C T HNSC 3458648 + 3458628 3458668 41 GCAACATCTTGGTCACCAGCCCACCCGCTCAGCAAAGAAAC GCAACATTTTGGTCACCAGCCCACCCGCTCAGCAAAGAAAC < 41bp 1 0.081196362808252 1 0.127681881189346 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF174 ENSG00000103343 CDS Human protein_coding chr16:3458648 chr16:3458635 nonsynonymous SNV 0.114 1 8 hm5C_associated_SNPs_24217 0 0 0 0 0 Ribosome 1 0.500231730175284 1 0.999536539649431 hm5C_site_24984 DeepMRMD:1;iRNA_m5C:0.999536539649431 24985 chr19 50099247 50099247 1 + C T HNSC 50099242 + 50099222 50099262 41 CATGGGGGTGGCTGGGGACCCAGCTCCCTGGGAGGCGGCGG CATGGGGGTGGCTGGGGACCCAGCTTCCTGGGAGGCGGCGG < 41bp 1 0.680611848866937 1 0.666584849357605 experiment 0.638776302266125 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRR12 ENSG00000126464 CDS Human protein_coding chr19:50099242 chr19:50099247 nonsynonymous SNV 0.923 1 26 hm5C_associated_SNPs_24218 0 0 1 0 0 Exosome 1 0.500231643921092 0.66683030128479 0.999536712157815 hm5C_site_24985 DeepMRMD:0.66683030128479;iRNA_m5C:0.999536712157815 24986 chr10 134016249 134016249 1 + G T HNSC 134016266 + 134016246 134016286 41 TTTGTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC TTTTTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC < 41bp 1 0.218227734210288 1 0.237871915102005 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016266 chr10:134016249 nonsynonymous SNV 0.036 1 4 hm5C_associated_SNPs_24219 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_24986 DeepMRMD:1;iRNA_m5C:0.999536712157815 24987 chr12 56622941 56622941 1 + C T HNSC 56622945 + 56622925 56622965 41 TGCAGGCCCGCCTGGCCCTTCCAGCAACCCTGTTAGTAACG TGCAGGCCCGCCTGGCTCTTCCAGCAACCCTGTTAGTAACG < 41bp 1 0.286228878153772 1 0.366401612758636 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NABP2 ENSG00000139579 CDS Human protein_coding chr12:56622945 chr12:56622941 nonsynonymous SNV 0.998 0 17 hm5C_associated_SNPs_24220 0 0 1 0 0 Ribosome 1 0.500231643923682 1 0.999536712152636 hm5C_site_24987 DeepMRMD:1;iRNA_m5C:0.999536712152636 24988 chr12 56622940 56622940 1 + C T HNSC 56622945 + 56622925 56622965 41 TGCAGGCCCGCCTGGCCCTTCCAGCAACCCTGTTAGTAACG TGCAGGCCCGCCTGGTCCTTCCAGCAACCCTGTTAGTAACG < 41bp 1 0.252991415068349 1 0.442690014839172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NABP2 ENSG00000139579 CDS Human protein_coding chr12:56622945 chr12:56622940 synonymous SNV . 0 16 hm5C_associated_SNPs_24221 0 0 1 0 0 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_24988 DeepMRMD:1;iRNA_m5C:0.999536712157812 24989 chr17 685749 685749 1 + C T HNSC 685745 + 685725 685765 41 GCCCAGTGAAAGTGGTGTTTCCTTCCGGAGAGGTGGTGGAA GCCCAGTGAAAGTGGTGTTTCCTTTCGGAGAGGTGGTGGAA < 41bp 1 0.0763168639418917 1 0.0709037780761719 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRM3 ENSG00000171861 CDS Human protein_coding chr17:685745 chr17:685749 nonsynonymous SNV 0.806 0 25 hm5C_associated_SNPs_24222 0 0 1 0 0 chromatin 1 0.500231654340137 1 0.999536691319725 hm5C_site_24989 DeepMRMD:1;iRNA_m5C:0.999536691319725 24990 chr12 57919369 57919369 1 + G A HNSC 57919351 + 57919331 57919371 41 CCTTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGG CCTTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGAGG < 41bp 1 0.219431129116785 1 0.390781044960022 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919351 chr12:57919369 synonymous SNV . 0 39 hm5C_associated_SNPs_24224 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24990 DeepMRMD:1;iRNA_m5C:0.999536712157815 24991 chr12 57919369 57919369 1 + G A HNSC 57919352 + 57919332 57919372 41 CTTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGC CTTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGAGGC < 41bp 1 0.408407139835623 1 0.353926509618759 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919352 chr12:57919369 synonymous SNV . 0 38 hm5C_associated_SNPs_24225 0 0 1 0 0 chromatin 1 0.500231643413918 1 0.999536713172164 hm5C_site_24991 DeepMRMD:1;iRNA_m5C:0.999536713172164 24992 chr12 57919369 57919369 1 + G A HNSC 57919353 + 57919333 57919373 41 TTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGCA TTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGAGGCA < 41bp 1 0.294083265908531 1 0.140579044818878 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919353 chr12:57919369 synonymous SNV . 0 37 hm5C_associated_SNPs_24226 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24992 DeepMRMD:1;iRNA_m5C:0.999536712157815 24993 chr12 57919369 57919369 1 + G A HNSC 57919354 + 57919334 57919374 41 TCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGCAA TCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGAGGCAA < 41bp 1 0.0951738965003436 1 0.063003808259964 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919354 chr12:57919369 synonymous SNV . 0 36 hm5C_associated_SNPs_24227 0 0 1 0 0 chromatin 1 0.500231599105371 1 0.999536801789258 hm5C_site_24993 DeepMRMD:1;iRNA_m5C:0.999536801789258 24994 chr12 57919369 57919369 1 + G A HNSC 57919355 + 57919335 57919375 41 CTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGCAAT CTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGAGGCAAT < 41bp 1 0.0479262571985154 1 0.179141730070114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919355 chr12:57919369 synonymous SNV . 0 35 hm5C_associated_SNPs_24228 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24994 DeepMRMD:1;iRNA_m5C:0.999536712157815 24995 chr20 44430653 44430653 1 + C T HNSC 44430647 + 44430627 44430667 41 TTTTGTGGCAGAGGAAAGGACGGCCTCCTGGACACATCCTG TTTTGTGGCAGAGGAAAGGACGGCCTTCTGGACACATCCTG < 41bp 1 0.556190540608396 1 0.333138793706894 experiment 0.887618918783208 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44430647 chr20:44430653 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_24229 0 0 1 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_24995 DeepMRMD:1;iRNA_m5C:0.999536712157815 24996 chr5 149772279 149772279 1 + C T HNSC 149772283 + 149772263 149772303 41 TCCAGTAGGTCCCACCCCCTCCAGGACAGAGACCCTGGTGG TCCAGTAGGTCCCACCTCCTCCAGGACAGAGACCCTGGTGG < 41bp 1 0.552789659881002 1 0.878966927528381 experiment 0.894420680237996 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149772283 chr5:149772279 nonsynonymous SNV 0.005 1 17 hm5C_associated_SNPs_24230 0 0 1 0 3 Nucleus 1 0.500231511106234 0.242066144943238 0.999536977787533 hm5C_site_24996 DeepMRMD:0.242066144943238;iRNA_m5C:0.999536977787533 24997 chr12 57919368 57919368 1 + G A HNSC 57919351 + 57919331 57919371 41 CCTTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGG CCTTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAAGGG < 41bp 1 0.23563190258303 1 0.396110475063324 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919351 chr12:57919368 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_24231 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24997 DeepMRMD:1;iRNA_m5C:0.999536712157815 24998 chr12 57919368 57919368 1 + G A HNSC 57919352 + 57919332 57919372 41 CTTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGC CTTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAAGGGC < 41bp 1 0.38268973981691 1 0.347110450267792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919352 chr12:57919368 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_24232 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24998 DeepMRMD:1;iRNA_m5C:0.999536712157815 24999 chr12 57919368 57919368 1 + G A HNSC 57919353 + 57919333 57919373 41 TTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGCA TTCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAAGGGCA < 41bp 1 0.302818309576746 1 0.159691005945206 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919353 chr12:57919368 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_24233 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_24999 DeepMRMD:1;iRNA_m5C:0.999536712157815 25000 chr12 57919368 57919368 1 + G A HNSC 57919354 + 57919334 57919374 41 TCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGCAA TCTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAAGGGCAA < 41bp 1 0.0898207987658182 1 0.0803572535514832 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919354 chr12:57919368 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_24234 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157813 hm5C_site_25000 DeepMRMD:1;iRNA_m5C:0.999536712157813 25001 chr12 57919368 57919368 1 + G A HNSC 57919355 + 57919335 57919375 41 CTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAGGGGCAAT CTGGGGGCAGTAGCAGCCCCCGTTTCCTCCCAAAGGGCAAT < 41bp 1 0.047805039767012 1 0.211701273918152 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919355 chr12:57919368 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_24235 0 0 1 0 0 chromatin 1 0.50023164392107 1 0.999536712157861 hm5C_site_25001 DeepMRMD:1;iRNA_m5C:0.999536712157861 25002 chr2 228398379 228398379 1 + C T HNSC 228398373 + 228398353 228398393 41 TTCCCAGAGTCATCAAACAGCATCAGCTGTTAGTAAAGTTT TTCCCAGAGTCATCAAACAGCATCAGTTGTTAGTAAAGTTT < 41bp 1 0.423860940948609 1 0.0725222229957581 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228398373 chr2:228398379 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_24236 0 0 1 0 1 Cytosol 1 0.500231630438629 1 0.999536739122742 hm5C_site_25002 DeepMRMD:1;iRNA_m5C:0.999536739122742 25003 chr17 33321400 33321400 1 + G A HNSC 33321403 + 33321383 33321423 41 AGGTGCATAAGAATGGAGACCACTTCAGCTACTTCAGCCGC AGGTGCATAAGAATGGAAACCACTTCAGCTACTTCAGCCGC < 41bp 1 0.320546121749022 1 0.0687514245510101 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33321403 chr17:33321400 nonsynonymous SNV 0.989 2 18 hm5C_associated_SNPs_24237 0 0 0 0 0 Cytosol 1 0.500231642492612 1 0.999536715014776 hm5C_site_25003 DeepMRMD:1;iRNA_m5C:0.999536715014776 25004 chr22 30818340 30818340 1 + C T HNSC 30818334 + 30818314 30818354 41 TCAATTTCACTGTGGAGGTCCTGCTTCCAGACAAAGCCTCA TCAATTTCACTGTGGAGGTCCTGCTTTCAGACAAAGCCTCA < 41bp 1 0.224277492708277 1 0.136543840169907 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC14L2 ENSG00000100003 CDS Human protein_coding chr22:30818334 chr22:30818340 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_24238 0 0 0 0 1 chromatin 1 0.500231650848284 1 0.999536698303431 hm5C_site_25004 DeepMRMD:1;iRNA_m5C:0.999536698303431 25005 chr6 25551233 25551233 1 + C T HNSC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCACTGAAAAGATTTCTAT < 41bp 1 0.502482436281261 1 0.262890934944153 experiment 0.995035127437477 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551233 synonymous SNV . 0 27 hm5C_associated_SNPs_24239 0 0 0 0 2 unknown 1 0.50023461738306 1 0.999530765233881 hm5C_site_25005 DeepMRMD:1;iRNA_m5C:0.999530765233881 25006 chr20 36012652 36012652 1 + C T HNSC 36012654 + 36012634 36012674 41 CGCTGGCGGGGGCGCTTTCCCCGCCTCGCAGACCCCCAGCA CGCTGGCGGGGGCGCTTTTCCCGCCTCGCAGACCCCCAGCA < 41bp 1 0.61230604537385 1 0.695893526077271 experiment 0.7753879092523 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SRC ENSG00000197122 CDS Human protein_coding chr20:36012654 chr20:36012652 synonymous SNV . 0 19 hm5C_associated_SNPs_24240 0 0 0 0 1 Ribosome 1 0.500231643921092 0.608212947845458 0.999536712157815 hm5C_site_25006 DeepMRMD:0.608212947845458;iRNA_m5C:0.999536712157815 25007 chr19 18856674 18856674 1 + C T HNSC 18856662 + 18856642 18856682 41 CAATCCTCGGGCCTGGACACCAGCCGGACCACCCGGCACCA CAATCCTCGGGCCTGGACACCAGCCGGACCACTCGGCACCA < 41bp 1 0.35753905329174 1 0.30661529302597 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18856662 chr19:18856674 synonymous SNV . 0 33 hm5C_associated_SNPs_24241 0 0 0 0 1 Cytosol 1 0.500231643925728 1 0.999536712148544 hm5C_site_25007 DeepMRMD:1;iRNA_m5C:0.999536712148544 25008 chr19 18856674 18856674 1 + C T HNSC 18856665 + 18856645 18856685 41 TCCTCGGGCCTGGACACCAGCCGGACCACCCGGCACCATGG TCCTCGGGCCTGGACACCAGCCGGACCACTCGGCACCATGG < 41bp 1 0.511019120309751 1 0.332862168550491 experiment 0.977961759380498 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18856665 chr19:18856674 synonymous SNV . 0 30 hm5C_associated_SNPs_24242 0 0 0 0 1 Cytosol 1 0.500231643782432 1 0.999536712435135 hm5C_site_25008 DeepMRMD:1;iRNA_m5C:0.999536712435135 25009 chr10 134016257 134016257 1 + G T HNSC 134016266 + 134016246 134016286 41 TTTGTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC TTTGTCACCCCTGGGGCGGGCCGCTTCGTCCCTCGGAAAAC < 41bp 1 0.16703112916607 1 0.247023671865463 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016266 chr10:134016257 synonymous SNV . 0 12 hm5C_associated_SNPs_24243 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_25009 DeepMRMD:1;iRNA_m5C:0.999536712157815 25010 chr6 31601198 31601198 1 + C T HNSC 31601218 + 31601198 31601238 41 CCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTGGACCAAG TCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTGGACCAAG < 41bp 1 0.308882609091285 1 0.131213843822479 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31601218 chr6:31601198 synonymous SNV . 0 1 hm5C_associated_SNPs_24244 0 0 1 0 1 Ribosome 1 0.500231644516944 1 0.999536710966111 hm5C_site_25010 DeepMRMD:1;iRNA_m5C:0.999536710966111 25011 chr19 13063836 13063836 1 + C A HNSC 13063834 + 13063814 13063854 41 AGAACTTGGCTGCCAACTTCCTCCTGAGTCAGAACTTTGAT AGAACTTGGCTGCCAACTTCCTACTGAGTCAGAACTTTGAT < 41bp 1 0.403503066011078 1 0.4743871986866 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD23A ENSG00000179262 CDS Human protein_coding chr19:13063834 chr19:13063836 synonymous SNV . 0 23 hm5C_associated_SNPs_24245 0 0 1 0 1 Ribosome 1 0.500231643920287 1 0.999536712159426 hm5C_site_25011 DeepMRMD:1;iRNA_m5C:0.999536712159426 25012 chr3 126751349 126751349 1 + G T HNSC 126751338 + 126751318 126751358 41 TCGGTGGTGGCCCAGACCTTCATGGACTCCTGCTCCACCTC TCGGTGGTGGCCCAGACCTTCATGGACTCCTTCTCCACCTC < 41bp 1 0.364976268826355 1 0.122744351625443 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751338 chr3:126751349 nonsynonymous SNV 0.943 4 32 hm5C_associated_SNPs_24246 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_25012 DeepMRMD:1;iRNA_m5C:0.999536712157815 25013 chr8 73921394 73921394 1 + C T HNSC 73921391 + 73921371 73921411 41 CTCTCTCTTTGCCGAGCTTTCCGCGACGGCCGCTCCGAGGA CTCTCTCTTTGCCGAGCTTTCCGTGACGGCCGCTCCGAGGA < 41bp 1 0.690878630619362 1 0.54640257358551 experiment 0.618242738761275 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TERF1 ENSG00000147601 CDS Human protein_coding chr8:73921391 chr8:73921394 synonymous SNV . 0 24 hm5C_associated_SNPs_24247 0 0 1 0 0 Nucleus 1 0.500231643955112 0.90719485282898 0.999536712089775 hm5C_site_25013 DeepMRMD:0.90719485282898;iRNA_m5C:0.999536712089775 25014 chr3 47030591 47030591 1 + G C HNSC 47030605 + 47030585 47030625 41 AACATAGAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGT AACATACAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGT < 41bp 1 0.0852261263984471 1 0.594394862651825 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030605 chr3:47030591 nonsynonymous SNV 0.799 0 7 hm5C_associated_SNPs_24249 0 0 1 0 2 Nucleus 1 0.500231643921092 0.81121027469635 0.999536712157815 hm5C_site_25014 DeepMRMD:0.81121027469635;iRNA_m5C:0.999536712157815 25015 chr3 47030591 47030591 1 + G C HNSC 47030606 + 47030586 47030626 41 ACATAGAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGTG ACATACAGGCAGGCCGGGGCCAAGTGCTAGTGCCCCGAGTG < 41bp 1 0.387024600294236 1 0.666030406951904 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47030606 chr3:47030591 nonsynonymous SNV 0.799 0 6 hm5C_associated_SNPs_24250 0 0 1 0 2 Nucleus 1 0.500231643925489 0.667939186096192 0.999536712149023 hm5C_site_25015 DeepMRMD:0.667939186096192;iRNA_m5C:0.999536712149023 25016 chr11 63743743 63743743 1 + C T HNSC 63743738 + 63743718 63743758 41 TCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCT TCCTGCTTCGTGACCTTCCTCCTGCTAGCGGGCTGGATCCT < 41bp 1 0.226917863975105 1 0.733794689178467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743738 chr11:63743743 nonsynonymous SNV 0.529 2 26 hm5C_associated_SNPs_24251 0 0 1 0 1 Ribosome 1 0.500231643922697 0.532410621643066 0.999536712154607 hm5C_site_25016 DeepMRMD:0.532410621643066;iRNA_m5C:0.999536712154607 25017 chr11 63743743 63743743 1 + C T HNSC 63743739 + 63743719 63743759 41 CCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTG CCTGCTTCGTGACCTTCCTCCTGCTAGCGGGCTGGATCCTG < 41bp 1 0.609060977058146 1 0.455826967954636 experiment 0.781878045883708 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743739 chr11:63743743 nonsynonymous SNV 0.529 2 25 hm5C_associated_SNPs_24252 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25017 DeepMRMD:1;iRNA_m5C:0.999536712157815 25018 chr19 3192541 3192541 1 + C T HNSC 3192559 + 3192539 3192579 41 CTCATGCGGCTACTGGACTTCTCCTACGAGCAGTACCAGAA CTTATGCGGCTACTGGACTTCTCCTACGAGCAGTACCAGAA < 41bp 1 0.516976163024669 1 0.764112830162048 experiment 0.966047673950661 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3192559 chr19:3192541 synonymous SNV . 0 3 hm5C_associated_SNPs_24253 0 0 1 0 1 Ribosome 1 0.500231643921092 0.471774339675904 0.999536712157815 hm5C_site_25018 DeepMRMD:0.471774339675904;iRNA_m5C:0.999536712157815 25019 chr19 3192541 3192541 1 + C T HNSC 3192561 + 3192541 3192581 41 CATGCGGCTACTGGACTTCTCCTACGAGCAGTACCAGAAGG TATGCGGCTACTGGACTTCTCCTACGAGCAGTACCAGAAGG < 41bp 1 0.0886087820682854 1 0.375955045223236 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3192561 chr19:3192541 synonymous SNV . 0 1 hm5C_associated_SNPs_24254 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25019 DeepMRMD:1;iRNA_m5C:0.999536712157815 25020 chr17 30372816 30372816 1 + C T HNSC 30372808 + 30372788 30372828 41 AGTCAAGCTGCATTGCAACACTGCATGTCTGACTAACAGCA AGTCAAGCTGCATTGCAACACTGCATGTTTGACTAACAGCA < 41bp 1 0.663022105445645 1 0.435618489980698 experiment 0.673955789108711 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30372808 chr17:30372816 synonymous SNV . 0 29 hm5C_associated_SNPs_24255 0 0 1 0 2 chromatin 1 0.500234967292513 1 0.999530065414973 hm5C_site_25020 DeepMRMD:1;iRNA_m5C:0.999530065414973 25021 chr22 26829615 26829615 1 + G C HNSC 26829613 + 26829593 26829633 41 GCCCTTGGGACCCCCGAGGACTGATTGTCTGACCTTGCTTC GCCCTTGGGACCCCCGAGGACTCATTGTCTGACCTTGCTTC < 41bp 1 0.461689388234781 1 0.175075650215149 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ASPHD2 ENSG00000128203 CDS Human protein_coding chr22:26829613 chr22:26829615 nonsynonymous SNV 0.363 1 23 hm5C_associated_SNPs_24256 0 0 1 0 0 Endoplasmic reticulum 1 0.500231658748369 1 0.999536682503262 hm5C_site_25021 DeepMRMD:1;iRNA_m5C:0.999536682503262 25022 chr15 40259747 40259747 1 + C T HNSC 40259728 + 40259708 40259748 41 CAGGCCCCATCCCTGTGCATCAGCTTCGCAGGTACACAGCT CAGGCCCCATCCCTGTGCATCAGCTTCGCAGGTACACAGTT < 41bp 1 0.332495763341807 1 0.25035297870636 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40259728 chr15:40259747 nonsynonymous SNV 0.950 0 40 hm5C_associated_SNPs_24257 0 0 1 0 0 Ribosome 1 0.500231652031276 1 0.999536695937449 hm5C_site_25022 DeepMRMD:1;iRNA_m5C:0.999536695937449 25023 chr19 42839480 42839480 1 + C T HNSC 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTTGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT < 41bp 1 0.111991110162804 1 0.186142772436142 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839480 synonymous SNV . 0 4 hm5C_associated_SNPs_24259 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_25023 DeepMRMD:1;iRNA_m5C:0.999536712157815 25024 chr6 27101036 27101036 1 + G A HNSC 27101032 + 27101012 27101052 41 GGTGCTGGAGTACCTGACCGCCGAGATCCTGGAACTGGCGG GGTGCTGGAGTACCTGACCGCCGAAATCCTGGAACTGGCGG < 41bp 1 0.699886470527553 1 0.527028560638428 experiment 0.600227058944895 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101032 chr6:27101036 synonymous SNV . 0 25 hm5C_associated_SNPs_24260 0 0 1 0 0 Ribosome 1 0.500231643921092 0.945942878723144 0.999536712157815 hm5C_site_25024 DeepMRMD:0.945942878723144;iRNA_m5C:0.999536712157815 25025 chr6 27101036 27101036 1 + G A HNSC 27101054 + 27101034 27101074 41 GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACAA GAAATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACAA < 41bp 1 0.561413685197089 1 0.534898817539215 experiment 0.877172629605822 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101054 chr6:27101036 synonymous SNV . 0 3 hm5C_associated_SNPs_24261 0 0 1 0 0 Ribosome 1 0.50023164392109 0.93020236492157 0.999536712157821 hm5C_site_25025 DeepMRMD:0.93020236492157;iRNA_m5C:0.999536712157821 25026 chr3 52327209 52327209 1 + G T HNSC 52327226 + 52327206 52327246 41 AAGGTTGGTCCTCAGGGCCTCTCTAAGCCTTAGGGCCCCTC AAGTTTGGTCCTCAGGGCCTCTCTAAGCCTTAGGGCCCCTC < 41bp 1 0.398555779309175 1 0.817132174968719 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control GLYCTK ENSG00000168237 splicing Human protein_coding chr3:52327226 chr3:52327209 . . 0 4 hm5C_associated_SNPs_24262 0 0 1 0 0 chromatin 1 0.500231643921092 0.365735650062562 0.999536712157815 hm5C_site_25026 DeepMRMD:0.365735650062562;iRNA_m5C:0.999536712157815 25027 chr19 16962311 16962311 1 + C T HNSC 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC CCCCGGAGCACAGCAGGAAGCGCTCCCGGCTCTCGCTCCTC < 41bp 1 0.258371886168241 1 0.143813699483871 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962311 nonsynonymous SNV 0.962 2 31 hm5C_associated_SNPs_24263 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25027 DeepMRMD:1;iRNA_m5C:0.999536712157815 25028 chrX 73042039 73042039 1 + C T HNSC 73042026 - 73042006 73042046 41 CCCTCATGAAAAATGACTGACCACTGCTGGGCAGCAGGAGG CCCTCATAAAAAATGACTGACCACTGCTGGGCAGCAGGAGG < 41bp 1 0.05238534660051 1 0.14305317401886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042026 chrX:73042039 . . 0 8 hm5C_associated_SNPs_24264 0 0 1 0 0 unknown 1 0.500231634801558 1 0.999536730396883 hm5C_site_25028 DeepMRMD:1;iRNA_m5C:0.999536730396883 25029 chr1 33237322 33237322 1 + G A HNSC 33237305 + 33237285 33237325 41 TCCTCCAGCTCCGCCAGCCCCAGCTCCTGCTAGTTCCGCCC TCCTCCAGCTCCGCCAGCCCCAGCTCCTGCTAGTTCCACCC < 41bp 1 0.35757233328791 1 0.490256637334824 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33237305 chr1:33237322 nonsynonymous SNV 0.020 0 38 hm5C_associated_SNPs_24266 0 0 1 0 0 Ribosome 1 0.500231643921137 1 0.999536712157725 hm5C_site_25029 DeepMRMD:1;iRNA_m5C:0.999536712157725 25030 chr1 54562121 54562121 1 + C T HNSC 54562129 + 54562109 54562149 41 TGCCAGTCGGCACGTTTGTACAGACCCACAAAAAGTGACCT TGCCAGTCGGCATGTTTGTACAGACCCACAAAAAGTGACCT < 41bp 1 0.34242981357788 1 0.456837326288223 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCEANC2 ENSG00000116205 CDS Human protein_coding chr1:54562129 chr1:54562121 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_24267 0 0 0 0 0 chromatin 1 0.500232160611935 1 0.999535678776129 hm5C_site_25030 DeepMRMD:1;iRNA_m5C:0.999535678776129 25031 chr17 7800529 7800529 1 + G A HNSC 7800537 + 7800517 7800557 41 AGTGAAAGACCCGCACTATGCTGAGATGGAGGAGAAGTACT AGTGAAAGACCCACACTATGCTGAGATGGAGGAGAAGTACT < 41bp 1 0.447622052178122 1 0.213505625724792 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7800537 chr17:7800529 synonymous SNV . 0 13 hm5C_associated_SNPs_24268 0 0 1 0 1 Cytosol 1 0.500231643921095 1 0.999536712157811 hm5C_site_25031 DeepMRMD:1;iRNA_m5C:0.999536712157811 25032 chr14 56233184 56233184 1 + C T HNSC 56233191 + 56233171 56233211 41 GACCAAGCGAGGCCATGCCTCCCTGGACTGCCTCAAGGTGT GACCAAGCGAGGCTATGCCTCCCTGGACTGCCTCAAGGTGT < 41bp 1 0.33310047921263 1 0.338901817798615 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233191 chr14:56233184 . . 0 14 hm5C_associated_SNPs_24269 0 0 0 0 0 unknown 1 0.500231565023175 1 0.99953686995365 hm5C_site_25032 DeepMRMD:1;iRNA_m5C:0.99953686995365 25033 chr17 65905793 65905793 1 + G A HNSC 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG AATAAAAATAGAGCCTGATTCTGAAAAAAATGAGGTAAAAG < 41bp 1 0.432915982992161 1 0.748916566371918 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905793 nonsynonymous SNV 0.983 0 29 hm5C_associated_SNPs_24270 0 0 1 0 2 Cytosol 1 0.500231643921586 0.502166867256164 0.999536712156827 hm5C_site_25033 DeepMRMD:0.502166867256164;iRNA_m5C:0.999536712156827 25034 chr6 26091716 26091716 1 + A G HNSC 26091728 + 26091708 26091748 41 GGAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACC GGAAAGGCGCAAGATTCGGGCCAGGCAGAACAGGGCCTACC < 41bp 1 0.38546835364495 1 0.295099318027496 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091728 chr6:26091716 nonsynonymous SNV 0.792 1 9 hm5C_associated_SNPs_24271 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921039 1 0.999536712157922 hm5C_site_25034 DeepMRMD:1;iRNA_m5C:0.999536712157922 25035 chr6 26091716 26091716 1 + A G HNSC 26091729 + 26091709 26091749 41 GAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACCT GAAAGGCGCAAGATTCGGGCCAGGCAGAACAGGGCCTACCT < 41bp 1 0.464413538924617 1 0.463816225528717 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091729 chr6:26091716 nonsynonymous SNV 0.792 1 8 hm5C_associated_SNPs_24272 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643922347 1 0.999536712155307 hm5C_site_25035 DeepMRMD:1;iRNA_m5C:0.999536712155307 25036 chr17 43226879 43226879 1 + G C HNSC 43226860 + 43226840 43226880 41 GACGACTCGTCCGCTGGCGGCGACTTCCCGCCGCCGGCAGA GACGACTCGTCCGCTGGCGGCGACTTCCCGCCGCCGGCACA < 41bp 1 0.46204099674836 1 0.0977369248867035 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HEXIM1 ENSG00000186834 CDS Human protein_coding chr17:43226860 chr17:43226879 nonsynonymous SNV 0.002 0 40 hm5C_associated_SNPs_24273 0 0 1 0 0 Ribosome 1 0.50023164304169 1 0.99953671391662 hm5C_site_25036 DeepMRMD:1;iRNA_m5C:0.99953671391662 25037 chr8 102381119 102381119 1 + T A HNSC 102381132 + 102381112 102381152 41 TCTTGATTCCACGTTCCCTCCACAAAATGCCTGGCGAAGCC TCTTGATACCACGTTCCCTCCACAAAATGCCTGGCGAAGCC < 41bp 1 0.690503438828665 1 0.595871686935425 experiment 0.618993122342669 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NACAP1 ENSG00000228224 ncRNA_exonic Human transcribed_processed_pseudogene chr8:102381132 chr8:102381119 . . 0 8 hm5C_associated_SNPs_24275 0 0 0 0 1 unknown 1 0.500231643882839 0.80825662612915 0.999536712234322 hm5C_site_25037 DeepMRMD:0.80825662612915;iRNA_m5C:0.999536712234322 25038 chr19 5691434 5691434 1 + C A HNSC 5691427 + 5691407 5691447 41 CATGGAGTTACTGAAGGTCTCCAAGGACAAACGGGCCCTCA CATGGAGTTACTGAAGGTCTCCAAGGAAAAACGGGCCCTCA < 41bp 1 0.419875575366861 1 0.932596564292908 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691427 chr19:5691434 nonsynonymous SNV 0.998 0 28 hm5C_associated_SNPs_24276 0 0 1 0 0 Ribosome 1 0.500231643920551 0.134806871414184 0.999536712158897 hm5C_site_25038 DeepMRMD:0.134806871414184;iRNA_m5C:0.999536712158897 25039 chr16 68390961 68390961 1 + G A HNSC 68390977 + 68390957 68390997 41 GGGGGCTGCTGCTGGAACCCCCACTGCAAGCAGGCCGTCTA GGGGACTGCTGCTGGAACCCCCACTGCAAGCAGGCCGTCTA < 41bp 1 0.207884992412752 1 0.464602530002594 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68390977 chr16:68390961 nonsynonymous SNV 0.315 0 5 hm5C_associated_SNPs_24278 0 0 1 0 1 Nucleus 1 0.500231693836479 1 0.999536612327042 hm5C_site_25039 DeepMRMD:1;iRNA_m5C:0.999536612327042 25040 chr8 120431405 120431405 1 + C G HNSC 120431390 + 120431370 120431410 41 GCTTACAGGCCAGAAGCCACCCTAGGAGTAGAAGTCTCTGA GCTTACAGGCCAGAAGCCACCCTAGGAGTAGAAGTGTCTGA < 41bp 1 0.210561571442049 1 0.124692529439926 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOV ENSG00000136999 CDS Human protein_coding chr8:120431390 chr8:120431405 synonymous SNV . 0 36 hm5C_associated_SNPs_24279 0 0 0 0 1 exosome 1 0.500231639149941 1 0.999536721700119 hm5C_site_25040 DeepMRMD:1;iRNA_m5C:0.999536721700119 25041 chr17 7752801 7752801 1 + G A HNSC 7752799 + 7752779 7752819 41 CTTCTGCCCAGCCCACACCCCCGTCAGCCTCTGTCCCTGGA CTTCTGCCCAGCCCACACCCCCATCAGCCTCTGTCCCTGGA < 41bp 1 0.019221421431487 1 0.116546452045441 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7752799 chr17:7752801 synonymous SNV . 0 23 hm5C_associated_SNPs_24280 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_25041 DeepMRMD:1;iRNA_m5C:0.999536712157815 25042 chr17 7752801 7752801 1 + G A HNSC 7752800 + 7752780 7752820 41 TTCTGCCCAGCCCACACCCCCGTCAGCCTCTGTCCCTGGAA TTCTGCCCAGCCCACACCCCCATCAGCCTCTGTCCCTGGAA < 41bp 1 0.235081172219035 1 0.141557931900024 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7752800 chr17:7752801 synonymous SNV . 0 22 hm5C_associated_SNPs_24281 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25042 DeepMRMD:1;iRNA_m5C:0.999536712157815 25043 chr1 3328722 3328722 1 + C T HNSC 3328714 + 3328694 3328734 41 GGCCAGCCCAAGTTTGGGGGCGGCTTGGCGCCCCCGGGGGC GGCCAGCCCAAGTTTGGGGGCGGCTTGGTGCCCCCGGGGGC < 41bp 1 0.430910964103587 1 0.338757216930389 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328714 chr1:3328722 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_24282 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25043 DeepMRMD:1;iRNA_m5C:0.999536712157815 25044 chr1 3328722 3328722 1 + C T HNSC 3328724 + 3328704 3328744 41 AGTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGC AGTTTGGGGGCGGCTTGGTGCCCCCGGGGGCCCCGAACAGC < 41bp 1 0.215999400458472 1 0.214775174856186 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328724 chr1:3328722 nonsynonymous SNV 0.000 0 19 hm5C_associated_SNPs_24283 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25044 DeepMRMD:1;iRNA_m5C:0.999536712157815 25045 chr1 3328722 3328722 1 + C T HNSC 3328725 + 3328705 3328745 41 GTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCG GTTTGGGGGCGGCTTGGTGCCCCCGGGGGCCCCGAACAGCG < 41bp 1 0.569245673675812 1 0.44482895731926 experiment 0.861508652648376 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328725 chr1:3328722 nonsynonymous SNV 0.000 0 18 hm5C_associated_SNPs_24284 0 0 0 0 0 Nucleus 1 0.500231643921389 1 0.999536712157221 hm5C_site_25045 DeepMRMD:1;iRNA_m5C:0.999536712157221 25046 chr1 3328722 3328722 1 + C T HNSC 3328726 + 3328706 3328746 41 TTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGT TTTGGGGGCGGCTTGGTGCCCCCGGGGGCCCCGAACAGCGT < 41bp 1 0.573733803764707 1 0.548657894134521 experiment 0.852532392470586 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328726 chr1:3328722 nonsynonymous SNV 0.000 0 17 hm5C_associated_SNPs_24285 0 0 0 0 0 Nucleus 1 0.500231643921093 0.902684211730958 0.999536712157815 hm5C_site_25046 DeepMRMD:0.902684211730958;iRNA_m5C:0.999536712157815 25047 chr1 3328722 3328722 1 + C T HNSC 3328727 + 3328707 3328747 41 TTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGTG TTGGGGGCGGCTTGGTGCCCCCGGGGGCCCCGAACAGCGTG < 41bp 1 0.603184882687763 1 0.864768743515015 experiment 0.793630234624475 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328727 chr1:3328722 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_24286 0 0 0 0 0 Nucleus 1 0.500231643921092 0.27046251296997 0.999536712157815 hm5C_site_25047 DeepMRMD:0.27046251296997;iRNA_m5C:0.999536712157815 25048 chr9 138395634 138395634 1 + C T HNSC 138395653 + 138395633 138395673 41 TCTTTGGCCCCACGGTCCGCCTGCCGGACCTCATCATCTTC TTTTTGGCCCCACGGTCCGCCTGCCGGACCTCATCATCTTC < 41bp 1 0.439280315941215 1 0.121225208044052 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MRPS2 ENSG00000122140 CDS Human protein_coding chr9:138395653 chr9:138395634 synonymous SNV . 0 2 hm5C_associated_SNPs_24287 0 0 1 0 0 Cytosol 1 0.500231643745101 1 0.999536712509798 hm5C_site_25048 DeepMRMD:1;iRNA_m5C:0.999536712509798 25049 chr17 55194253 55194253 1 + C A HNSC 55194240 + 55194220 55194260 41 GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTC GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGAAGAAGTC < 41bp 1 0.0430556347741109 1 0.117238789796829 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194240 chr17:55194253 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_24288 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920588 1 0.999536712158824 hm5C_site_25049 DeepMRMD:1;iRNA_m5C:0.999536712158824 25050 chr17 55194253 55194253 1 + C A HNSC 55194241 + 55194221 55194261 41 GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTCC GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGAAGAAGTCC < 41bp 1 0.0467620065522466 1 0.0850552916526794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194241 chr17:55194253 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_24289 0 0 1 0 2 Endoplasmic reticulum 1 0.500231665362517 1 0.999536669274966 hm5C_site_25050 DeepMRMD:1;iRNA_m5C:0.999536669274966 25051 chr8 77764690 77764690 1 + G C HNSC 77764692 + 77764672 77764712 41 AGTAACATAGTGAGTGCAGACTGCCAAATCATGAAGGATGT AGTAACATAGTGAGTGCACACTGCCAAATCATGAAGGATGT < 41bp 1 0.135849708801454 1 0.140226155519485 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77764692 chr8:77764690 nonsynonymous SNV 0.320 2 19 hm5C_associated_SNPs_24290 0 0 1 0 0 Ribosome 1 0.500231642709325 1 0.999536714581351 hm5C_site_25051 DeepMRMD:1;iRNA_m5C:0.999536714581351 25052 chr9 93624537 93624537 1 + G A HNSC 93624554 + 93624534 93624574 41 CACGAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA CACAAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA < 41bp 1 0.169603805059491 1 0.0427922904491425 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624554 chr9:93624537 nonsynonymous SNV 0.914 2 4 hm5C_associated_SNPs_24291 0 0 0 0 2 Cytosol 1 0.500231851786078 1 0.999536296427843 hm5C_site_25052 DeepMRMD:1;iRNA_m5C:0.999536296427843 25053 chr20 44045292 44045292 1 + C A HNSC 44045286 + 44045266 44045306 41 GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGT GGGGCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGT < 41bp 1 0.641376260254938 1 0.0407969653606415 experiment 0.717247479490124 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045286 chr20:44045292 stopgain 0.998 1 27 hm5C_associated_SNPs_24292 0 0 1 0 3 Ribosome 1 0.5002315166333 1 0.9995369667334 hm5C_site_25053 DeepMRMD:1;iRNA_m5C:0.9995369667334 25054 chr20 44045292 44045292 1 + C A HNSC 44045287 + 44045267 44045307 41 GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTG GGGCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGTG < 41bp 1 0.215758157163352 1 0.0321584939956665 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045287 chr20:44045292 stopgain 0.998 1 26 hm5C_associated_SNPs_24293 0 0 1 0 3 Ribosome 1 0.500231643920747 1 0.999536712158506 hm5C_site_25054 DeepMRMD:1;iRNA_m5C:0.999536712158506 25055 chr20 44045292 44045292 1 + C A HNSC 44045288 + 44045268 44045308 41 GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGG GGCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGTGG < 41bp 1 0.401989921656558 1 0.0762265622615814 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045288 chr20:44045292 stopgain 0.998 1 25 hm5C_associated_SNPs_24294 0 0 1 0 3 Ribosome 1 0.500231644078589 1 0.999536711842822 hm5C_site_25055 DeepMRMD:1;iRNA_m5C:0.999536711842822 25056 chr20 44045292 44045292 1 + C A HNSC 44045289 + 44045269 44045309 41 GCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGGG GCCACCCTTCCTGCAGGCCCCATAAGGTGCAGAGCTGTGGG < 41bp 1 0.621563072625691 1 0.169166475534439 experiment 0.756873854748618 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045289 chr20:44045292 stopgain 0.998 1 24 hm5C_associated_SNPs_24295 0 0 1 0 3 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_25056 DeepMRMD:1;iRNA_m5C:0.999536712157815 25057 chr6 26205156 26205156 1 + G A HNSC 26205141 + 26205121 26205161 41 AGCGATGGATGTGGTCTACGCGCTGAAGAGACAGGGACGCA AGCGATGGATGTGGTCTACGCGCTGAAGAGACAGGAACGCA < 41bp 1 0.689732077342331 1 0.346016347408295 experiment 0.620535845315338 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H4E ENSG00000198518 CDS Human other chr6:26205141 chr6:26205156 nonsynonymous SNV 0.051 0 36 hm5C_associated_SNPs_24296 0 0 1 0 0 Nucleus 1 0.500231642665079 1 0.999536714669841 hm5C_site_25057 DeepMRMD:1;iRNA_m5C:0.999536714669841 25058 chr15 45353314 45353314 1 + C G HNSC 45353327 + 45353307 45353347 41 ATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCC ATGAATTGTGCAAGATGGGCCGATACAATCTGTCACCTTCC < 41bp 1 0.272655492778384 1 0.369756519794464 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SORD ENSG00000140263 CDS Human protein_coding chr15:45353327 chr15:45353314 nonsynonymous SNV 0.712 1 8 hm5C_associated_SNPs_24297 0 0 0 0 1 Ribosome 1 0.500231643821735 1 0.999536712356531 hm5C_site_25058 DeepMRMD:1;iRNA_m5C:0.999536712356531 25059 chr3 13672897 13672897 1 + T C HNSC 13672900 + 13672880 13672920 41 TCAACGTGCCAGGGAGCTACCAGTGTGCATGCCCTGAGCAG TCAACGTGCCAGGGAGCCACCAGTGTGCATGCCCTGAGCAG < 41bp 1 0.514203587630527 1 0.285824537277222 experiment 0.971592824738947 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672900 chr3:13672897 nonsynonymous SNV 0.997 4 18 hm5C_associated_SNPs_24298 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920027 1 0.999536712159946 hm5C_site_25059 DeepMRMD:1;iRNA_m5C:0.999536712159946 25060 chr11 77301379 77301379 1 + C A HNSC 77301390 + 77301370 77301410 41 CATGTCCCCCGAGACGGGTGCGGTGAGGCTATTGGCTCAGC CATGTCCCCAGAGACGGGTGCGGTGAGGCTATTGGCTCAGC < 41bp 1 0.516863282575244 1 0.446054071187973 experiment 0.966273434849512 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AQP11 ENSG00000178301 CDS Human protein_coding chr11:77301390 chr11:77301379 synonymous SNV . 0 10 hm5C_associated_SNPs_24301 0 0 1 0 0 Ribosome 1 0.500231643877218 1 0.999536712245565 hm5C_site_25060 DeepMRMD:1;iRNA_m5C:0.999536712245565 25061 chr17 16342900 16342900 1 + G A HNSC 16342881 + 16342861 16342901 41 TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGA TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTAA < 41bp 1 0.12949129927689 1 0.0657915771007538 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342881 chr17:16342900 . . 0 40 hm5C_associated_SNPs_24302 0 0 1 1 2 Nucleus 1 0.50023313708268 1 0.999533725834639 hm5C_site_25061 DeepMRMD:1;iRNA_m5C:0.999533725834639 25062 chr1 22332001 22332001 1 + C T HNSC 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACGTGTGGCGGTAGCCTCATCGTCCCCGATTGGGT < 41bp 1 0.308187163843368 1 0.0460287034511566 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22332001 nonsynonymous SNV 0.031 1 29 hm5C_associated_SNPs_24304 0 0 0 0 2 Endoplasmic reticulum 1 0.500231688596583 1 0.999536622806834 hm5C_site_25062 DeepMRMD:1;iRNA_m5C:0.999536622806834 25063 chr1 22332001 22332001 1 + C T HNSC 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACGTGTGGCGGTAGCCTCATCGTCCCCGATTGGGTT < 41bp 1 0.54347530484526 1 0.158221036195755 experiment 0.91304939030948 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22332001 nonsynonymous SNV 0.031 1 28 hm5C_associated_SNPs_24305 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644051227 1 0.999536711897547 hm5C_site_25063 DeepMRMD:1;iRNA_m5C:0.999536711897547 25064 chr1 22332001 22332001 1 + C T HNSC 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACGTGTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGT < 41bp 1 0.448054045336156 1 0.420783042907715 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22332001 nonsynonymous SNV 0.031 1 26 hm5C_associated_SNPs_24306 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921168 1 0.999536712157663 hm5C_site_25064 DeepMRMD:1;iRNA_m5C:0.999536712157663 25065 chr1 22332001 22332001 1 + C T HNSC 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACGTGTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGAC < 41bp 1 0.219519317463496 1 0.250668346881866 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22332001 nonsynonymous SNV 0.031 1 23 hm5C_associated_SNPs_24307 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921623 1 0.999536712156755 hm5C_site_25065 DeepMRMD:1;iRNA_m5C:0.999536712156755 25066 chr1 22332001 22332001 1 + C T HNSC 22332002 + 22331982 22332022 41 TGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGC TGTGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTGC < 41bp 1 0.648266591095246 1 0.809612810611725 experiment 0.703466817809509 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332002 chr1:22332001 nonsynonymous SNV 0.031 1 20 hm5C_associated_SNPs_24308 0 0 0 0 2 Endoplasmic reticulum 1 0.500232408788837 0.38077437877655 0.999535182422326 hm5C_site_25066 DeepMRMD:0.38077437877655;iRNA_m5C:0.999535182422326 25067 chr1 22332001 22332001 1 + C T HNSC 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTGCCG < 41bp 1 0.247481825837827 1 0.0843959748744965 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22332001 nonsynonymous SNV 0.031 1 18 hm5C_associated_SNPs_24310 0 0 0 0 2 Endoplasmic reticulum 1 0.500568132587036 1 0.998863734825928 hm5C_site_25067 DeepMRMD:1;iRNA_m5C:0.998863734825928 25068 chr1 22332001 22332001 1 + C T HNSC 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATCGTCCCCGATTGGGTTGTGACTGCCGG < 41bp 1 0.436739355772814 1 0.302554965019226 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22332001 nonsynonymous SNV 0.031 1 17 hm5C_associated_SNPs_24311 0 0 0 0 2 Endoplasmic reticulum 1 0.500230887067744 1 0.999538225864512 hm5C_site_25068 DeepMRMD:1;iRNA_m5C:0.999538225864512 25069 chr1 22332001 22332001 1 + C T HNSC 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT CGTCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT < 41bp 1 0.674600735392229 1 0.243885308504105 experiment 0.650798529215542 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22332001 nonsynonymous SNV 0.031 1 3 hm5C_associated_SNPs_24312 0 0 0 0 2 Endoplasmic reticulum 1 0.500238252319971 1 0.999523495360058 hm5C_site_25069 DeepMRMD:1;iRNA_m5C:0.999523495360058 25070 chr7 44741199 44741199 1 + G C HNSC 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCCGAGGCCAGATCCAGCTTTCATGAGATGCTTC < 41bp 1 0.194802845474623 1 0.438447773456573 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741199 nonsynonymous SNV 0.997 2 29 hm5C_associated_SNPs_24314 0 0 1 0 2 Nucleus 1 0.500231643869671 1 0.999536712260658 hm5C_site_25070 DeepMRMD:1;iRNA_m5C:0.999536712260658 25071 chr19 40704301 40704301 1 + C T HNSC 40704298 + 40704278 40704318 41 ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTCGC ACAGTCCTGATCCTGGAGGCCATTGAGAACCACAACCTCGC < 41bp 1 0.0676197615891127 1 0.0521954298019409 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40704298 chr19:40704301 synonymous SNV . 0 24 hm5C_associated_SNPs_24316 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_25071 DeepMRMD:1;iRNA_m5C:0.999536712157815 25072 chrX 129063382 129063382 1 + C T HNSC 129063370 + 129063350 129063390 41 ATTTGAAAGGACCATCCAGACCCCCATAGGATCCACATGGA ATTTGAAAGGACCATCCAGACCCCCATAGGATTCACATGGA < 41bp 1 0.357818687412989 1 0.0986251831054688 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP14A ENSG00000156697 CDS Human protein_coding chrX:129063370 chrX:129063382 nonsynonymous SNV 0.989 0 33 hm5C_associated_SNPs_24317 0 0 0 0 1 Cytosol 1 0.500231642906917 1 0.999536714186165 hm5C_site_25072 DeepMRMD:1;iRNA_m5C:0.999536714186165 25073 chr18 13067879 13067879 1 + G A HNSC 13067893 + 13067873 13067913 41 CTTATGGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC CTTATGAAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC < 41bp 1 0.309427463400998 1 0.412310183048248 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13067893 chr18:13067879 nonsynonymous SNV 0.938 2 7 hm5C_associated_SNPs_24318 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_25073 DeepMRMD:1;iRNA_m5C:0.999536712157814 25074 chr8 22106602 22106602 1 + C T HNSC 22106604 + 22106584 22106624 41 AAGAGGCCAAGATGAAGGCTCCTCCCAAAGCAGCCAGGAAG AAGAGGCCAAGATGAAGGTTCCTCCCAAAGCAGCCAGGAAG < 41bp 1 0.0177433188125345 1 0.0435902774333954 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POLR3D ENSG00000168495 CDS Human protein_coding chr8:22106604 chr8:22106602 nonsynonymous SNV 0.990 0 19 hm5C_associated_SNPs_24319 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25074 DeepMRMD:1;iRNA_m5C:0.999536712157815 25075 chr2 74783947 74783947 1 + G A HNSC 74783942 + 74783922 74783962 41 TTTATGATCTGCCTCGGGAGCCCAAGGATGCATGGTGGTGC TTTATGATCTGCCTCGGGAGCCCAAAGATGCATGGTGGTGC < 41bp 1 0.465784516952544 1 0.115088045597076 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOK1 ENSG00000115325 CDS Human protein_coding chr2:74783942 chr2:74783947 synonymous SNV . 0 26 hm5C_associated_SNPs_24320 0 0 0 0 0 Cytosol 1 0.500231792734899 1 0.999536414530202 hm5C_site_25075 DeepMRMD:1;iRNA_m5C:0.999536414530202 25076 chr2 38908571 38908571 1 + C T HNSC 38908580 + 38908560 38908600 41 AGAGCACAAGCCAGTCAGGCCACACCAGTCAACCTGACCAA AGAGCACAAGCTAGTCAGGCCACACCAGTCAACCTGACCAA < 41bp 1 0.218710013478068 1 0.0790366232395172 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908580 chr2:38908571 synonymous SNV . 0 12 hm5C_associated_SNPs_24321 0 0 1 0 1 Ribosome 1 0.500231429000862 1 0.999537141998275 hm5C_site_25076 DeepMRMD:1;iRNA_m5C:0.999537141998275 25077 chr14 104638927 104638927 1 + G A HNSC 104638925 + 104638905 104638945 41 CCCCTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTGC CCCCTAGGCCGAAGTCTGCTCGAGGACCGTGGCCGACGTGC < 41bp 1 0.603730180679043 1 0.881359994411469 experiment 0.792539638641913 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638925 chr14:104638927 nonsynonymous SNV 0.949 3 23 hm5C_associated_SNPs_24322 0 0 0 0 2 Ribosome 1 0.500231643618358 0.237280011177062 0.999536712763283 hm5C_site_25077 DeepMRMD:0.237280011177062;iRNA_m5C:0.999536712763283 25078 chr1 154248134 154248134 1 + C T HNSC 154248129 + 154248109 154248149 41 CCTCCAGCCCTGGATGATGCCTTTTCCATCCTGGACTTATT CCTCCAGCCCTGGATGATGCCTTTTTCATCCTGGACTTATT < 41bp 1 0.116770599204213 1 0.0346508920192719 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAX1 ENSG00000143575 CDS Human protein_coding chr1:154248129 chr1:154248134 nonsynonymous SNV 0.999 4 26 hm5C_associated_SNPs_24323 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25078 DeepMRMD:1;iRNA_m5C:0.999536712157815 25079 chrX 70514363 70514363 1 + C T HNSC 70514364 + 70514344 70514384 41 GACAGATGCAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT GACAGATGCAGTGAAGGCTTCTTCCTGCTAACCACGTAAGT < 41bp 1 0.124820577629806 1 0.222309350967407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70514364 chrX:70514363 nonsynonymous SNV 0.998 1 20 hm5C_associated_SNPs_24324 0 0 1 0 1 Nucleus 1 0.500231643919846 1 0.999536712160308 hm5C_site_25079 DeepMRMD:1;iRNA_m5C:0.999536712160308 25080 chr2 32824950 32824950 1 + C T HNSC 32824931 + 32824911 32824951 41 GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCT GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACTT < 41bp 1 0.121829968329964 1 0.601558148860931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824931 chr2:32824950 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_24325 0 0 1 0 1 Nucleus 1 0.500231630625956 0.796883702278138 0.999536738748088 hm5C_site_25080 DeepMRMD:0.796883702278138;iRNA_m5C:0.999536738748088 25081 chr1 983443 983443 1 + G A HNSC 983446 + 983426 983466 41 AGGAGCCATTGCTGCGGGAGCCACGGCCAGAGCCACCACTG AGGAGCCATTGCTGCGGAAGCCACGGCCAGAGCCACCACTG < 41bp 1 0.27067207118303 1 0.280228912830353 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:983446 chr1:983443 nonsynonymous SNV 0.006 0 18 hm5C_associated_SNPs_24326 0 0 1 0 1 Endoplasmic reticulum 1 0.500231646336963 1 0.999536707326073 hm5C_site_25081 DeepMRMD:1;iRNA_m5C:0.999536707326073 25082 chr7 106826888 106826888 1 + C G HNSC 106826904 + 106826884 106826924 41 TGGCCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC TGGCGTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC < 41bp 1 0.120445298507976 1 0.0270611345767975 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826904 chr7:106826888 nonsynonymous SNV 0.995 5 5 hm5C_associated_SNPs_24327 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25082 DeepMRMD:1;iRNA_m5C:0.999536712157815 25083 chr8 145139721 145139721 1 + C T HNSC 145139712 + 145139692 145139732 41 TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCT TACTTGCTCCCCGGCCTCTCCCGCTTCGTTTCCATCGGCCT < 41bp 1 0.229002328263402 1 0.225277185440063 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139712 chr8:145139721 synonymous SNV . 0 30 hm5C_associated_SNPs_24329 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_25083 DeepMRMD:1;iRNA_m5C:0.999536712157815 25084 chr18 13067878 13067878 1 + G A HNSC 13067893 + 13067873 13067913 41 CTTATGGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC CTTATAGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC < 41bp 1 0.280402888347686 1 0.487709075212479 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13067893 chr18:13067878 nonsynonymous SNV 0.931 4 6 hm5C_associated_SNPs_24331 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25084 DeepMRMD:1;iRNA_m5C:0.999536712157815 25085 chr11 118498114 118498114 1 + C T HNSC 118498128 + 118498108 118498148 41 TGAGCTCTATTGAGAAGGACCTGCAAGAGATCATGGACTCA TGAGCTTTATTGAGAAGGACCTGCAAGAGATCATGGACTCA < 41bp 1 0.5338785825617 1 0.181615203619003 experiment 0.9322428348766 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118498128 chr11:118498114 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_24332 0 0 1 0 1 Cytosol 1 0.500217557566797 1 0.999564884866406 hm5C_site_25085 DeepMRMD:1;iRNA_m5C:0.999564884866406 25086 chr6 160496887 160496887 1 + C T HNSC 160496884 + 160496864 160496904 41 TCGCTCTTTGTTTAGGATATCGGCCGGGTAGCAGGACCACC TCGCTCTTTGTTTAGGATATCGGTCGGGTAGCAGGACCACC < 41bp 1 0.0617898149970427 1 0.503226816654205 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160496884 chr6:160496887 synonymous SNV . 0 24 hm5C_associated_SNPs_24333 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921741 0.99354636669159 0.999536712156518 hm5C_site_25086 DeepMRMD:0.99354636669159;iRNA_m5C:0.999536712156518 25087 chr4 128811294 128811294 1 + C T HNSC 128811293 + 128811273 128811313 41 GCAAGACTAGGGGTATGGAGCCACCATGGGGTTATCAGAAT GCAAGACTAGGGGTATGGAGCTACCATGGGGTTATCAGAAT < 41bp 1 0.408223851033707 1 0.205216497182846 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK4 ENSG00000142731 CDS Human protein_coding chr4:128811293 chr4:128811294 nonsynonymous SNV 0.342 0 22 hm5C_associated_SNPs_24334 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25087 DeepMRMD:1;iRNA_m5C:0.999536712157815 25088 chrX 153641566 153641566 1 + C T HNSC 153641548 + 153641528 153641568 41 CTTTCCTGTCCTCTAGGGATCCTGAAACTCCGCCACATCTG CTTTCCTGTCCTCTAGGGATCCTGAAACTCCGCCACATTTG < 41bp 1 0.305460261229619 1 0.111875504255295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAZ ENSG00000102125 CDS Human protein_coding chrX:153641548 chrX:153641566 synonymous SNV . 0 39 hm5C_associated_SNPs_24336 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25088 DeepMRMD:1;iRNA_m5C:0.999536712157815 25089 chr17 66251959 66251959 1 + C T HNSC 66251944 + 66251924 66251964 41 GGAAGAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT GGAAGAAGCTGACCGGCGCCCTCTAAACCTTTGCCTTATCT < 41bp 1 0.625663378431275 1 0.779043674468994 experiment 0.748673243137451 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control AMZ2 ENSG00000196704 CDS Human protein_coding chr17:66251944 chr17:66251959 nonsynonymous SNV 0.997 3 36 hm5C_associated_SNPs_24337 0 0 0 0 1 Ribosome 1 0.500231643921092 0.441912651062012 0.999536712157815 hm5C_site_25089 DeepMRMD:0.441912651062012;iRNA_m5C:0.999536712157815 25090 chr19 50548313 50548313 1 + G A HNSC 50548302 + 50548282 50548322 41 CGACCACAGCCAGCAGGATTCTGTTCAGGAAGGGGAGAAAC CGACCACAGCCAGCAGGATTCTGTTCAGGAAAGGGAGAAAC < 41bp 1 0.297924781055226 1 0.148166120052338 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50548302 chr19:50548313 nonsynonymous SNV 0.005 0 32 hm5C_associated_SNPs_24338 0 0 1 0 0 Cytosol 1 0.500217944664809 1 0.999564110670381 hm5C_site_25090 DeepMRMD:1;iRNA_m5C:0.999564110670381 25091 chr19 803562 803562 1 + G A HNSC 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCAGGGATCTGACGAGCTTTTCTCTACTT < 41bp 1 0.402370165725258 1 0.268792748451233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803562 nonsynonymous SNV 0.990 2 15 hm5C_associated_SNPs_24339 0 0 1 0 2 Cytosol 1 0.500231645282822 1 0.999536709434357 hm5C_site_25091 DeepMRMD:1;iRNA_m5C:0.999536709434357 25092 chr19 58758137 58758137 1 + G A HNSC 58758154 + 58758134 58758174 41 GCAGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT GCAAGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT < 41bp 1 0.461499027110045 1 0.460327297449112 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758154 chr19:58758137 nonsynonymous SNV 0.003 0 4 hm5C_associated_SNPs_24340 0 0 1 0 3 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_25092 DeepMRMD:1;iRNA_m5C:0.999536712157815 25093 chr19 58758137 58758137 1 + G A HNSC 58758156 + 58758136 58758176 41 AGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG AAGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG < 41bp 1 0.58072024703016 1 0.79943311214447 experiment 0.838559505939679 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758156 chr19:58758137 nonsynonymous SNV 0.003 0 2 hm5C_associated_SNPs_24341 0 0 1 0 3 chromatin 1 0.500231643921136 0.40113377571106 0.999536712157729 hm5C_site_25093 DeepMRMD:0.40113377571106;iRNA_m5C:0.999536712157729 25094 chr15 91448716 91448716 1 + G A HNSC 91448697 + 91448677 91448717 41 CCATCTCCCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG CCATCTCCCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCAG < 41bp 1 0.262246930819251 1 0.214571356773376 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91448697 chr15:91448716 nonsynonymous SNV 0.992 0 40 hm5C_associated_SNPs_24342 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_25094 DeepMRMD:1;iRNA_m5C:0.999536712157815 25095 chr19 58758138 58758138 1 + G A HNSC 58758154 + 58758134 58758174 41 GCAGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT GCAGAGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT < 41bp 1 0.471011884420132 1 0.424341857433319 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758154 chr19:58758138 nonsynonymous SNV 0.002 0 5 hm5C_associated_SNPs_24343 0 0 1 0 3 chromatin 1 0.500231643921649 1 0.999536712156702 hm5C_site_25095 DeepMRMD:1;iRNA_m5C:0.999536712156702 25096 chr19 58758138 58758138 1 + G A HNSC 58758156 + 58758136 58758176 41 AGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG AGAGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG < 41bp 1 0.588384803124236 1 0.776582837104797 experiment 0.823230393751529 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758156 chr19:58758138 nonsynonymous SNV 0.002 0 3 hm5C_associated_SNPs_24344 0 0 1 0 3 chromatin 1 0.500231643937919 0.446834325790406 0.999536712124163 hm5C_site_25096 DeepMRMD:0.446834325790406;iRNA_m5C:0.999536712124163 25097 chr20 42271216 42271216 1 + C T HNSC 42271196 + 42271176 42271216 41 CCAGTAAACTACCAAAGGACCAACAGGATGCCAAACATATC CCAGTAAACTACCAAAGGACCAACAGGATGCCAAACATATT < 41bp 1 0.44740296195893 1 0.216137796640396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42271196 chr20:42271216 synonymous SNV . 0 41 hm5C_associated_SNPs_24345 0 0 1 3 2 chromatin 1 0.500231643911293 1 0.999536712177413 hm5C_site_25097 DeepMRMD:1;iRNA_m5C:0.999536712177413 25098 chr22 18979447 18979447 1 + G T HNSC 18979435 + 18979415 18979455 41 AGGCCCGTCCTGGTGGAGTTCACCCTGCTGGAGATGGAGAA AGGCCCGTCCTGGTGGAGTTCACCCTGCTGGATATGGAGAA < 41bp 1 0.270509545403557 1 0.128181636333466 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979435 chr22:18979447 . . 0 33 hm5C_associated_SNPs_24346 0 0 1 0 1 unknown 1 0.500231643922699 1 0.999536712154603 hm5C_site_25098 DeepMRMD:1;iRNA_m5C:0.999536712154603 25099 chr22 18979447 18979447 1 + G T HNSC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC ATATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC < 41bp 1 0.122442272736166 1 0.0580072999000549 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979447 . . 0 2 hm5C_associated_SNPs_24347 0 0 1 0 1 unknown 1 0.50023178733643 1 0.999536425327139 hm5C_site_25099 DeepMRMD:1;iRNA_m5C:0.999536425327139 25100 chr4 169630280 169630280 1 + C A HNSC 169630296 + 169630276 169630316 41 TGCCCAGCTGGTTGTCACCTCAGGTATGTGAGGAGTAAAAA TGCCAAGCTGGTTGTCACCTCAGGTATGTGAGGAGTAAAAA < 41bp 1 0.423650728559155 1 0.776170790195465 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169630296 chr4:169630280 nonsynonymous SNV 0.878 0 5 hm5C_associated_SNPs_24348 0 0 0 0 1 Cytosol 1 0.500231640350945 0.44765841960907 0.999536719298109 hm5C_site_25100 DeepMRMD:0.44765841960907;iRNA_m5C:0.999536719298109 25101 chr15 96875646 96875646 1 + G C HNSC 96875664 + 96875644 96875684 41 AAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGC AACCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGC < 41bp 1 0.571846542617078 1 0.432192027568817 experiment 0.856306914765843 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F2 ENSG00000185551 CDS Human protein_coding chr15:96875664 chr15:96875646 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_24349 0 0 1 0 0 Cytoplasm 1 0.500231643921178 1 0.999536712157644 hm5C_site_25101 DeepMRMD:1;iRNA_m5C:0.999536712157644 25102 chr15 66777514 66777514 1 + G A HNSC 66777521 + 66777501 66777541 41 GCCAAGGACCCCCGGGAGGCCCCTTAGCTGTGAGTAGCCTG GCCAAGGACCCCCAGGAGGCCCCTTAGCTGTGAGTAGCCTG < 41bp 1 0.128734125469579 1 0.0778791010379791 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66777521 chr15:66777514 nonsynonymous SNV 0.864 1 14 hm5C_associated_SNPs_24351 0 0 1 0 1 Ribosome 1 0.50023164392298 1 0.99953671215404 hm5C_site_25102 DeepMRMD:1;iRNA_m5C:0.99953671215404 25103 chr16 30779633 30779633 1 + G A HNSC 30779624 + 30779604 30779644 41 AAGAAGGAGGAGCTGGTCCCCTCTGAAGAGGACTTCCAGGG AAGAAGGAGGAGCTGGTCCCCTCTGAAGAAGACTTCCAGGG < 41bp 1 0.495761201662577 1 0.483616769313812 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30779624 chr16:30779633 synonymous SNV . 0 30 hm5C_associated_SNPs_24352 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25103 DeepMRMD:1;iRNA_m5C:0.999536712157815 25104 chr17 21731304 21731304 1 + G A HNSC 21731317 + 21731297 21731337 41 GCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAACATCC GCAGCTGAAAGATGGCGGTACTCTTTCTGACTACAACATCC < 41bp 1 0.131327506849856 1 0.107180327177048 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731317 chr17:21731304 stopgain 0.991 0 8 hm5C_associated_SNPs_24353 0 0 1 0 0 Ribosome 1 0.500187148200814 1 0.999625703598372 hm5C_site_25104 DeepMRMD:1;iRNA_m5C:0.999625703598372 25105 chr8 64099575 64099575 1 + C T HNSC 64099584 + 64099564 64099604 41 AAGGACCTCAGCCACAGGCCCAGCCTCACCAAGTGCAGCCT AAGGACCTCAGTCACAGGCCCAGCCTCACCAAGTGCAGCCT < 41bp 1 0.294846753967622 1 0.0596712231636047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control YTHDF3 ENSG00000185728 CDS Human protein_coding chr8:64099584 chr8:64099575 nonsynonymous SNV 1.000 0 12 hm5C_associated_SNPs_24354 0 0 1 0 0 chromatin 1 0.500231643921061 1 0.999536712157879 hm5C_site_25105 DeepMRMD:1;iRNA_m5C:0.999536712157879 25106 chr6 90331648 90331648 1 + G T HNSC 90331647 + 90331627 90331667 41 TTTGCCTCCTTCAGGTCTTGCGCTTCAGTCGTGGGCGAAGC TTTGCCTCCTTCAGGTCTTGCTCTTCAGTCGTGGGCGAAGC < 41bp 1 0.127858443490624 1 0.0506463646888733 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKRD6 ENSG00000083099;ENSG00000135299 CDS Human other chr6:90331647 chr6:90331648 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_24355 0 0 0 0 2 exosome 1 0.500231612433578 1 0.999536775132843 hm5C_site_25106 DeepMRMD:1;iRNA_m5C:0.999536775132843 25107 chr4 128748493 128748493 1 + G C HNSC 128748508 + 128748488 128748528 41 ACATGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG ACATGCAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG < 41bp 1 0.280430238560854 1 0.143199682235718 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128748508 chr4:128748493 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_24356 0 0 0 0 2 Cytosol 1 0.500231643928435 1 0.999536712143129 hm5C_site_25107 DeepMRMD:1;iRNA_m5C:0.999536712143129 25108 chr15 89015921 89015921 1 + G A HNSC 89015924 + 89015904 89015944 41 GGAAAGAAATTTGAGGAGATCCCAATTGCACACATTAAAGC GGAAAGAAATTTGAGGAAATCCCAATTGCACACATTAAAGC < 41bp 1 0.635541078160519 1 0.29617315530777 experiment 0.728917843678963 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89015924 chr15:89015921 synonymous SNV . 0 18 hm5C_associated_SNPs_24357 0 0 1 0 2 Ribosome 1 0.500231643743433 1 0.999536712513134 hm5C_site_25108 DeepMRMD:1;iRNA_m5C:0.999536712513134 25109 chr14 64990072 64990072 1 + G C HNSC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC CAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC < 41bp 1 0.610394214981883 1 0.55030483007431 experiment 0.779211570036234 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990072 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_24358 0 0 1 0 1 Cytosol 1 0.500240374701687 0.89939033985138 0.999519250596625 hm5C_site_25109 DeepMRMD:0.89939033985138;iRNA_m5C:0.999519250596625 25110 chr14 103390078 103390078 1 + T G HNSC 103390064 + 103390044 103390084 41 CCAGCACTGACCCAGGCGGTCTCCAAACTCTGGGTCCCCAA CCAGCACTGACCCAGGCGGTCTCCAAACTCTGGGGCCCCAA < 41bp 1 0.675002988883155 1 0.833601713180542 experiment 0.64999402223369 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AMN ENSG00000166126 CDS Human protein_coding chr14:103390064 chr14:103390078 nonsynonymous SNV 0.950 4 35 hm5C_associated_SNPs_24359 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.332796573638916 0.999536712157815 hm5C_site_25110 DeepMRMD:0.332796573638916;iRNA_m5C:0.999536712157815 25111 chr10 102114253 102114253 1 + C A HNSC 102114241 + 102114221 102114261 41 ACCACAAGTTTTCAGAAACACATGCTGATCCTCATAATTCC ACCACAAGTTTTCAGAAACACATGCTGATCCTAATAATTCC < 41bp 1 0.27708902614274 1 0.0934436619281769 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102114241 chr10:102114253 nonsynonymous SNV 0.846 4 33 hm5C_associated_SNPs_24360 0 0 1 0 1 Ribosome 1 0.500231613883118 1 0.999536772233765 hm5C_site_25111 DeepMRMD:1;iRNA_m5C:0.999536772233765 25112 chr22 40697290 40697290 1 + G A HNSC 40697295 + 40697275 40697315 41 ACGCATTGAATGTGGGGCTCCCAGACCTTCAAACCAAAGGG ACGCATTGAATGTGGAGCTCCCAGACCTTCAAACCAAAGGG < 41bp 1 0.188098698826385 1 0.357047021389008 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40697295 chr22:40697290 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_24361 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_25112 DeepMRMD:1;iRNA_m5C:0.999536712157812 25113 chr1 44069435 44069435 1 + G A HNSC 44069418 + 44069398 44069438 41 CGGGCCGACGAGGCGCGGCCCAACACCATAGATTTCGGCAA CGGGCCGACGAGGCGCGGCCCAACACCATAGATTTCGACAA < 41bp 1 0.399057128141884 1 0.0409096479415894 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44069418 chr1:44069435 nonsynonymous SNV 0.999 0 38 hm5C_associated_SNPs_24362 0 0 1 0 0 Ribosome 1 0.500231649948273 1 0.999536700103453 hm5C_site_25113 DeepMRMD:1;iRNA_m5C:0.999536700103453 25114 chr4 56291574 56291574 1 + G A HNSC 56291562 + 56291542 56291582 41 GTGACAATCATAGGAGGCATCGTTTTTTTGGCGTTTGCATT GTGACAATCATAGGAGGCATCGTTTTTTTGGCATTTGCATT < 41bp 1 0.101865719702438 1 0.0917621850967407 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56291562 chr4:56291574 synonymous SNV . 0 33 hm5C_associated_SNPs_24363 0 0 1 0 1 Ribosome 1 0.500231643821337 1 0.999536712357326 hm5C_site_25114 DeepMRMD:1;iRNA_m5C:0.999536712357326 25115 chr19 41509997 41509997 1 + T C HNSC 41510016 + 41509996 41510036 41 CTTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT CCTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT < 41bp 1 0.221734252743118 1 0.0773138701915741 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510016 chr19:41509997 nonsynonymous SNV 0.967 4 2 hm5C_associated_SNPs_24364 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25115 DeepMRMD:1;iRNA_m5C:0.999536712157815 25116 chr6 42986153 42986153 1 + C T HNSC 42986152 + 42986132 42986172 41 CACATGTATGTCTTTGGGGGCCGTGCCGACCGCTTTGGGCC CACATGTATGTCTTTGGGGGCTGTGCCGACCGCTTTGGGCC < 41bp 1 0.216270571696332 1 0.175445139408112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42986152 chr6:42986153 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_24365 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25116 DeepMRMD:1;iRNA_m5C:0.999536712157815 25117 chr2 97007517 97007517 1 + G A HNSC 97007527 + 97007507 97007547 41 CCCAGTCCTCGAAGACTTTCCTCAGAATGACGATGAGAAGG CCCAGTCCTCAAAGACTTTCCTCAGAATGACGATGAGAAGG < 41bp 1 0.555113394565382 1 0.277774155139923 experiment 0.889773210869236 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPH ENSG00000121152 CDS Human protein_coding chr2:97007527 chr2:97007517 nonsynonymous SNV 0.987 0 11 hm5C_associated_SNPs_24366 0 0 1 0 1 Cytosol 1 0.500231644718984 1 0.999536710562032 hm5C_site_25117 DeepMRMD:1;iRNA_m5C:0.999536710562032 25118 chr19 46509871 46509871 1 + C T HNSC 46509891 + 46509871 46509911 41 CGGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC TGGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC < 41bp 1 0.104474064242779 1 0.0807034075260162 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509891 chr19:46509871 nonsynonymous SNV 0.907 4 1 hm5C_associated_SNPs_24367 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_25118 DeepMRMD:1;iRNA_m5C:0.999536712157815 25119 chr12 62785134 62785134 1 + G C HNSC 62785130 + 62785110 62785150 41 TTTACATTCCAGTTCAACAACTTAGGCAATACTGATATCAA TTTACATTCCAGTTCAACAACTTACGCAATACTGATATCAA < 41bp 1 0.0584751799033286 1 0.0669218301773071 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient USP15 ENSG00000135655 CDS Human protein_coding chr12:62785130 chr12:62785134 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_24368 0 0 1 0 1 Ribosome 1 0.497178418219616 1 1 hm5C_site_25119 DeepMRMD:1;iRNA_m5C:1 25120 chr12 53516967 53516967 1 + C T HNSC 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCCTGGGGTTCTTCTATTCCGTCATGCTGAT < 41bp 1 0.124317063603937 1 0.0580506920814514 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516967 nonsynonymous SNV 0.996 4 28 hm5C_associated_SNPs_24369 0 0 0 0 1 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_25120 DeepMRMD:1;iRNA_m5C:0.999536712157815 25121 chr15 38773557 38773557 1 + C T KICH 38773574 + 38773554 38773594 41 CAACGATTACAATGGCACATCTACTTGCTGCTCGTGAAGAT CAATGATTACAATGGCACATCTACTTGCTGCTCGTGAAGAT < 41bp 1 0.391107299758663 1 0.168533056974411 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM98B ENSG00000171262 CDS Human protein_coding chr15:38773574 chr15:38773557 nonsynonymous SNV 0.197 3 4 hm5C_associated_SNPs_24370 0 0 1 0 1 Cytosol 1 0.500231644086264 1 0.999536711827473 hm5C_site_25121 DeepMRMD:1;iRNA_m5C:0.999536711827473 25122 chr8 145139183 145139183 1 + T C KICH 145139185 + 145139165 145139205 41 CTTGACCTGCTCAATCTCTTCCAGACCTTCTGCCAGAAAGG CTTGACCTGCTCAATCTCCTCCAGACCTTCTGCCAGAAAGG < 41bp 1 0.539022557434636 1 0.55097109079361 experiment 0.921954885130728 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139185 chr8:145139183 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_24372 0 0 1 0 1 Endoplasmic reticulum 1 0.50023153697361 0.89805781841278 0.99953692605278 hm5C_site_25122 DeepMRMD:0.89805781841278;iRNA_m5C:0.99953692605278 25123 chr3 47041771 47041771 1 + G A KICH 47041773 + 47041753 47041793 41 TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC TCCTTCGCCACTGGATGGACCGCGGCCCTTTCCTGCTGCTC < 41bp 1 0.428939734325509 1 0.46638748049736 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041773 chr3:47041771 synonymous SNV . 0 19 hm5C_associated_SNPs_24373 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25123 DeepMRMD:1;iRNA_m5C:0.999536712157815 25124 chr15 41105576 41105576 1 + C T KICH 41105590 + 41105570 41105610 41 TGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC TGACGATGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC < 41bp 1 0.456981145751482 1 0.123775213956833 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105590 chr15:41105576 synonymous SNV . 0 7 hm5C_associated_SNPs_24374 0 0 0 0 2 Ribosome 1 0.500231641872107 1 0.999536716255786 hm5C_site_25124 DeepMRMD:1;iRNA_m5C:0.999536716255786 25125 chr6 126210643 126210643 1 + G A KICH 126210642 + 126210622 126210662 41 TGATGTTGAACTGAAGGGGGCGCTAGATTTAGAAACCTGTG TGATGTTGAACTGAAGGGGGCACTAGATTTAGAAACCTGTG < 41bp 1 0.285164133896051 1 0.204472005367279 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCOA7 ENSG00000111912 CDS Human protein_coding chr6:126210642 chr6:126210643 synonymous SNV . 0 22 hm5C_associated_SNPs_24375 0 0 1 0 0 Ribosome 1 0.500231643921163 1 0.999536712157673 hm5C_site_25125 DeepMRMD:1;iRNA_m5C:0.999536712157673 25126 chr4 3107131 3107131 1 + G A KICH 3107132 + 3107112 3107152 41 CCCTGTGGAGGTTTGCTGAGCTGGCTCACCTGGTTCGGCCT CCCTGTGGAGGTTTGCTGAACTGGCTCACCTGGTTCGGCCT < 41bp 1 0.346698319158763 1 0.183101534843445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3107132 chr4:3107131 synonymous SNV . 0 20 hm5C_associated_SNPs_24376 0 0 1 0 2 Cytosol 1 0.500231643919773 1 0.999536712160455 hm5C_site_25126 DeepMRMD:1;iRNA_m5C:0.999536712160455 25127 chr17 79663491 79663491 1 + G A KICH 79663489 + 79663469 79663509 41 GGAGAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC GGAGAAGCTTCGCCGGGCAGCCAAGGAGGCAGAGCGCCAGC < 41bp 1 0.508411942241764 1 0.670639276504517 experiment 0.983176115516473 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663489 chr17:79663491 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_24377 0 0 1 0 1 Nucleus 1 0.500231643921092 0.658721446990966 0.999536712157815 hm5C_site_25127 DeepMRMD:0.658721446990966;iRNA_m5C:0.999536712157815 25128 chr18 21474920 21474920 1 + C T KICH 21474924 + 21474904 21474944 41 ACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT ACCTGGCCACCATGGGTGAGCAGCTCCGCCTGGTCAAGTCT < 41bp 1 0.20218483391886 1 0.182877540588379 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21474924 chr18:21474920 synonymous SNV . 0 17 hm5C_associated_SNPs_24378 0 0 0 0 1 Cytosol 1 0.500231644588776 1 0.999536710822448 hm5C_site_25128 DeepMRMD:1;iRNA_m5C:0.999536710822448 25129 chr16 70164360 70164360 1 + T A KICH 70164350 + 70164330 70164370 41 TCAGATCTATGACCGGACATCTGTTCTTCATGTAATGGTCA TCAGATCTATGACCGGACATCTGTTCTTCAAGTAATGGTCA < 41bp 1 0.0919961780083815 1 0.0905458927154541 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70164350 chr16:70164360 nonsynonymous SNV 0.983 2 31 hm5C_associated_SNPs_24379 0 0 1 0 2 Nucleus 1 0.500231643923642 1 0.999536712152715 hm5C_site_25129 DeepMRMD:1;iRNA_m5C:0.999536712152715 25130 chrX 103431192 103431192 1 + C T KICH 103431198 + 103431178 103431218 41 CTGAGATGGGTCTTCGGGAGCAACTTGATATTATTAAGATC CTGAGATGGGTCTTTGGGAGCAACTTGATATTATTAAGATC < 41bp 1 0.304204911520448 1 0.208489209413528 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103431198 chrX:103431192 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_24380 0 0 1 0 1 Ribosome 1 0.500231643927421 1 0.999536712145157 hm5C_site_25130 DeepMRMD:1;iRNA_m5C:0.999536712145157 25131 chr1 144014069 144014069 1 + G A KICH 144014050 + 144014030 144014070 41 ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATAC < 41bp 1 0.197186467724421 1 0.282242774963379 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014050 chr1:144014069 . 0.988 0 40 hm5C_associated_SNPs_24381 0 0 1 0 1 unknown 1 0.500231640981475 1 0.99953671803705 hm5C_site_25131 DeepMRMD:1;iRNA_m5C:0.99953671803705 25132 chr1 144014069 144014069 1 + G A KICH 144014052 + 144014032 144014072 41 CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATACAG < 41bp 1 0.226728623165718 1 0.478270620107651 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014052 chr1:144014069 . 0.988 0 38 hm5C_associated_SNPs_24382 0 0 1 0 1 unknown 1 0.50023147432042 1 0.99953705135916 hm5C_site_25132 DeepMRMD:1;iRNA_m5C:0.99953705135916 25133 chr1 249211775 249211775 1 + T C KICH 249211767 + 249211747 249211787 41 AGGAGCTTGGATCTAGGAGGCAGTATGGTAATAAAATTTGT AGGAGCTTGGATCTAGGAGGCAGTATGGCAATAAAATTTGT < 41bp 1 0.541131806085773 1 0.421268343925476 experiment 0.917736387828453 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249211767 chr1:249211775 nonsynonymous SNV 0.922 3 29 hm5C_associated_SNPs_24383 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25133 DeepMRMD:1;iRNA_m5C:0.999536712157815 25134 chr14 93277911 93277911 1 + C T KICH 93277898 + 93277878 93277918 41 TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCCTTAA TATAAAAATTTGTCACAGAGCGAGTTTGCTGCATGCCTTAA < 41bp 1 0.533074970440356 1 0.232861995697021 experiment 0.933850059119289 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93277898 chr14:93277911 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_24384 0 0 0 0 1 chromatin 1 0.500231621986421 1 0.999536756027158 hm5C_site_25134 DeepMRMD:1;iRNA_m5C:0.999536756027158 25135 chr5 54654428 54654428 1 + T C KICH 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGCCTGGTCGTGCTGGAAGGAGAGGAATG < 41bp 1 0.219840801200112 1 0.108363717794418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654428 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_24385 0 0 1 0 2 Nucleus 1 0.500231643930267 1 0.999536712139465 hm5C_site_25135 DeepMRMD:1;iRNA_m5C:0.999536712139465 25136 chr4 126337737 126337737 1 + A C KICH 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGTAACACAGAGTCTGGATCGGGAAACCAAAGAGCGCTTT < 41bp 1 0.632379536544556 1 0.919491589069366 experiment 0.735240926910888 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337737 synonymous SNV . 0 29 hm5C_associated_SNPs_24386 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 0.161016821861268 0.999536712157815 hm5C_site_25136 DeepMRMD:0.161016821861268;iRNA_m5C:0.999536712157815 25137 chr13 49771038 49771038 1 + A T KICH 49771026 + 49771006 49771046 41 TTTCTAGTTTGGACCATTTTCAGAAAAATGTGATATTACTA TTTCTAGTTTGGACCATTTTCAGAAAAATGTGTTATTACTA < 41bp 1 0.685424544566873 1 0.87929368019104 experiment 0.629150910866254 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49771026 chr13:49771038 nonsynonymous SNV 0.996 0 33 hm5C_associated_SNPs_24387 0 0 1 2 2 Cytosol 1 0.500231700386369 0.24141263961792 0.999536599227262 hm5C_site_25137 DeepMRMD:0.24141263961792;iRNA_m5C:0.999536599227262 25138 chr15 81295653 81295653 1 + G A KICH 81295655 + 81295635 81295675 41 TCAGGCTTTAAGGGAGAGGTCTTCGCCCAGGACTTTACCGC TCAGGCTTTAAGGGAGAGATCTTCGCCCAGGACTTTACCGC < 41bp 1 0.272345966705914 1 0.112213909626007 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TLNRD1 ENSG00000140406 CDS Human protein_coding chr15:81295655 chr15:81295653 synonymous SNV . 0 19 hm5C_associated_SNPs_24388 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_25138 DeepMRMD:1;iRNA_m5C:0.999536712157815 25139 chr16 24817998 24817998 1 + T C KICH 24817997 + 24817977 24818017 41 CACCATCTCAGCAGCAGCCACTCCATCAGCCAGCCATGAAG CACCATCTCAGCAGCAGCCACCCCATCAGCCAGCCATGAAG < 41bp 1 0.379781085979985 1 0.511662602424622 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24817997 chr16:24817998 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_24389 0 0 1 0 0 Nucleus 1 0.500231643919202 0.976674795150756 0.999536712161596 hm5C_site_25139 DeepMRMD:0.976674795150756;iRNA_m5C:0.999536712161596 25140 chr9 131730829 131730829 1 + A G KICH 131730830 + 131730810 131730850 41 TTGTTCAGTGCCTTCGGGAACAGTCCATGCTGCTAGAAATT TTGTTCAGTGCCTTCGGGAGCAGTCCATGCTGCTAGAAATT < 41bp 1 0.0399362497035913 1 0.228177636861801 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP188 ENSG00000095319 CDS Human protein_coding chr9:131730830 chr9:131730829 synonymous SNV . 0 20 hm5C_associated_SNPs_24390 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25140 DeepMRMD:1;iRNA_m5C:0.999536712157815 25141 chr17 48154412 48154412 1 + C G KICH 48154408 + 48154388 48154428 41 CGAACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCAC CGAACACCCGGACCTCGGAGCGCTGCGGGGAGGACGCCCAC < 41bp 1 0.308358749160795 1 0.405562669038773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154408 chr17:48154412 nonsynonymous SNV 0.016 0 25 hm5C_associated_SNPs_24391 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_25141 DeepMRMD:1;iRNA_m5C:0.999536712157815 25142 chr10 129866455 129866455 1 + C T KICH 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTTGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC < 41bp 1 0.100020123214914 1 0.0980632603168488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866455 synonymous SNV . 0 4 hm5C_associated_SNPs_24393 0 0 0 2 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25142 DeepMRMD:1;iRNA_m5C:0.999536712157815 25143 chr7 90233538 90233538 1 + A G KICH 90233548 + 90233528 90233568 41 ATAGCTTTGAAGAAAGATGACACCACCTTTGATGAGGTAGG ATAGCTTTGAGGAAAGATGACACCACCTTTGATGAGGTAGG < 41bp 1 0.281146050624208 1 0.198277980089188 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90233548 chr7:90233538 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_24394 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25143 DeepMRMD:1;iRNA_m5C:0.999536712157815 25144 chr18 9954094 9954094 1 + T A KICH 9954099 + 9954079 9954119 41 ACATTCGGATAAACCTGGATCAACCTCAACTGCATCCTTCA ACATTCGGATAAACCAGGATCAACCTCAACTGCATCCTTCA < 41bp 1 0.257820167573931 1 0.140516489744186 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VAPA ENSG00000101558 CDS Human protein_coding chr18:9954099 chr18:9954094 synonymous SNV . 0 16 hm5C_associated_SNPs_24395 0 0 1 0 1 Ribosome 1 0.500231643921035 1 0.99953671215793 hm5C_site_25144 DeepMRMD:1;iRNA_m5C:0.99953671215793 25145 chr17 42225428 42225428 1 + C A KICH 42225441 + 42225421 42225461 41 TCCAGCACGCCCAGTGCTGACAGCCGTCCATCATGCATAGG TCCAGCAAGCCCAGTGCTGACAGCCGTCCATCATGCATAGG < 41bp 1 0.545447812654459 1 0.0785290002822876 experiment 0.909104374691081 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225441 chr17:42225428 nonsynonymous SNV 0.024 0 8 hm5C_associated_SNPs_24396 0 0 1 0 0 chromatin 1 0.500231643889631 1 0.999536712220738 hm5C_site_25145 DeepMRMD:1;iRNA_m5C:0.999536712220738 25146 chr17 42225428 42225428 1 + C A KICH 42225444 + 42225424 42225464 41 AGCACGCCCAGTGCTGACAGCCGTCCATCATGCATAGGAGC AGCAAGCCCAGTGCTGACAGCCGTCCATCATGCATAGGAGC < 41bp 1 0.0434092570601248 1 0.514319896697998 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225444 chr17:42225428 nonsynonymous SNV 0.024 0 5 hm5C_associated_SNPs_24397 0 0 1 0 0 chromatin 1 0.500231657058775 0.971360206604004 0.999536685882451 hm5C_site_25146 DeepMRMD:0.971360206604004;iRNA_m5C:0.999536685882451 25147 chr4 99341203 99341203 1 + T C KICH 99341204 + 99341184 99341224 41 AAGATGTTATCAGCTGGGGTCACAGAGGCAGTTTTGAAATT AAGATGTTATCAGCTGGGGCCACAGAGGCAGTTTTGAAATT < 41bp 1 0.240195513801608 1 0.239603668451309 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99341204 chr4:99341203 nonsynonymous SNV 0.978 3 20 hm5C_associated_SNPs_24398 0 0 0 0 2 Ribosome 1 0.500231644313267 1 0.999536711373465 hm5C_site_25147 DeepMRMD:1;iRNA_m5C:0.999536711373465 25148 chr11 73360070 73360070 1 + C A KICH 73360060 + 73360040 73360080 41 CGTGGCTCCTCTGACAGGTCCCGCCTGACTCCGCTCTGGAA CGTGGCTCCTCTGACAGGTCCCGCCTGACTACGCTCTGGAA < 41bp 1 0.105977634993307 1 0.0444432199001312 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHB1 ENSG00000021300 CDS Human protein_coding chr11:73360060 chr11:73360070 nonsynonymous SNV 0.561 2 31 hm5C_associated_SNPs_24399 0 0 1 0 1 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_25148 DeepMRMD:1;iRNA_m5C:0.999536712157815 25149 chr1 116946537 116946537 1 + T C KICH 116946536 + 116946516 116946556 41 TGGTTCTGTGCCTTCCCCTACTCTCTTCTCATCTTCGTATA TGGTTCTGTGCCTTCCCCTACCCTCTTCTCATCTTCGTATA < 41bp 1 0.0477090797503636 1 0.059569776058197 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116946536 chr1:116946537 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_24400 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25149 DeepMRMD:1;iRNA_m5C:0.999536712157815 25150 chr6 27861260 27861260 1 + C G KICH 27861272 + 27861252 27861292 41 GGCTAAATCTGCTCCTGCCCCCAAAAAGGGCTCCAAGAAAG GGCTAAATGTGCTCCTGCCCCCAAAAAGGGCTCCAAGAAAG < 41bp 1 0.553445891620117 1 0.424577951431274 experiment 0.893108216759767 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIST1H2BO ENSG00000196331 CDS Human other chr6:27861272 chr6:27861260 nonsynonymous SNV 0.020 1 9 hm5C_associated_SNPs_24401 0 0 1 0 0 exosome 1 0.500231643921037 1 0.999536712157926 hm5C_site_25150 DeepMRMD:1;iRNA_m5C:0.999536712157926 25151 chr19 12917591 12917591 1 + A T KICH 12917604 + 12917584 12917624 41 GTCGATGAGGCGGGCAGGGGCCCCGTGCTGGGTGCGCCCCT GTCGATGTGGCGGGCAGGGGCCCCGTGCTGGGTGCGCCCCT < 41bp 1 0.674031893609806 1 0.171734899282455 experiment 0.651936212780388 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12917604 chr19:12917591 nonsynonymous SNV 0.999 5 8 hm5C_associated_SNPs_24402 0 0 1 0 1 Ribosome 1 0.500231642661044 1 0.999536714677912 hm5C_site_25151 DeepMRMD:1;iRNA_m5C:0.999536714677912 25152 chr19 12917591 12917591 1 + A T KICH 12917605 + 12917585 12917625 41 TCGATGAGGCGGGCAGGGGCCCCGTGCTGGGTGCGCCCCTA TCGATGTGGCGGGCAGGGGCCCCGTGCTGGGTGCGCCCCTA < 41bp 1 0.655712199937288 1 0.537184000015259 experiment 0.688575600125424 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12917605 chr19:12917591 nonsynonymous SNV 0.999 5 7 hm5C_associated_SNPs_24403 0 0 1 0 1 Ribosome 1 0.500231643921861 0.925631999969482 0.999536712156277 hm5C_site_25152 DeepMRMD:0.925631999969482;iRNA_m5C:0.999536712156277 25153 chr19 12917591 12917591 1 + A T KICH 12917606 + 12917586 12917626 41 CGATGAGGCGGGCAGGGGCCCCGTGCTGGGTGCGCCCCTAG CGATGTGGCGGGCAGGGGCCCCGTGCTGGGTGCGCCCCTAG < 41bp 1 0.542991873909088 1 0.398810565471649 experiment 0.914016252181825 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12917606 chr19:12917591 nonsynonymous SNV 0.999 5 6 hm5C_associated_SNPs_24404 0 0 1 0 1 Ribosome 1 0.500231643889793 1 0.999536712220415 hm5C_site_25153 DeepMRMD:1;iRNA_m5C:0.999536712220415 25154 chr3 48506046 48506046 1 + C T KICH 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGT < 41bp 1 0.26583412716344 1 0.117169976234436 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506046 synonymous SNV . 0 41 hm5C_associated_SNPs_24405 0 0 0 0 2 chromatin 1 0.500231643990316 1 0.999536712019367 hm5C_site_25154 DeepMRMD:1;iRNA_m5C:0.999536712019367 25155 chr3 48506046 48506046 1 + C T KICH 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGTC < 41bp 1 0.278888577532318 1 0.108530968427658 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506046 synonymous SNV . 0 40 hm5C_associated_SNPs_24406 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_25155 DeepMRMD:1;iRNA_m5C:0.999536712157815 25156 chr14 103802243 103802243 1 + T C KICH 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACCGCAGCGTGTCAGACCAGTTCTATCGCCACAAGATG < 41bp 1 0.186885061025554 1 0.0626984238624573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802243 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_24408 0 0 1 0 1 Cytosol 1 0.500231660896464 1 0.999536678207072 hm5C_site_25156 DeepMRMD:1;iRNA_m5C:0.999536678207072 25157 chr22 51160606 51160606 1 + G T KIRC 51160617 + 51160597 51160637 41 CAGCACCACGCCGCCTCTGCCGGGCTGGCCTCTGCCGCCGG CAGCACCACTCCGCCTCTGCCGGGCTGGCCTCTGCCGCCGG < 41bp 1 0.622180733359695 1 0.882248342037201 experiment 0.75563853328061 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51160617 chr22:51160606 nonsynonymous SNV . 0 10 hm5C_associated_SNPs_24410 0 0 0 0 0 cytosol 1 0.500231643921089 0.235503315925598 0.999536712157822 hm5C_site_25157 DeepMRMD:0.235503315925598;iRNA_m5C:0.999536712157822 25158 chr3 10191570 10191570 1 + T C KIRC 10191581 + 10191561 10191601 41 ACGAAGATCTGGAAGACCACCCAAATGTGCAGAAAGACCTG ACGAAGATCCGGAAGACCACCCAAATGTGCAGAAAGACCTG < 41bp 1 0.514458710714842 1 0.407610505819321 experiment 0.971082578570316 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VHL ENSG00000134086 CDS Human protein_coding chr3:10191581 chr3:10191570 nonsynonymous SNV 0.997 5 10 hm5C_associated_SNPs_24411 0 0 1 0 0 Ribosome 1 0.500231643921856 1 0.999536712156289 hm5C_site_25158 DeepMRMD:1;iRNA_m5C:0.999536712156289 25159 chr1 39888090 39888090 1 + G A KIRC 39888071 + 39888051 39888091 41 TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGC TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAAC < 41bp 1 0.0336309132429318 1 0.159667730331421 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39888071 chr1:39888090 synonymous SNV . 0 40 hm5C_associated_SNPs_24412 0 0 1 0 1 Endoplasmic reticulum 1 0.500233974963082 1 0.999532050073836 hm5C_site_25159 DeepMRMD:1;iRNA_m5C:0.999532050073836 25160 chr1 39888091 39888091 1 + C T KIRC 39888071 + 39888051 39888091 41 TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGC TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGT < 41bp 1 0.0280661778442473 1 0.137552589178085 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39888071 chr1:39888091 stopgain 1.000 1 41 hm5C_associated_SNPs_24413 0 0 1 0 1 Endoplasmic reticulum 1 0.500233975134785 1 0.99953204973043 hm5C_site_25160 DeepMRMD:1;iRNA_m5C:0.99953204973043 25161 chr7 4796681 4796681 1 + C G KIRC 4796673 + 4796653 4796693 41 ACCGTTACTTTATCAAAGTCCCACGTTCCCAGGAGGAGCCT ACCGTTACTTTATCAAAGTCCCACGTTCGCAGGAGGAGCCT < 41bp 1 0.101498388454174 1 0.0330659151077271 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796673 chr7:4796681 synonymous SNV . 0 29 hm5C_associated_SNPs_24414 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643861756 1 0.999536712276489 hm5C_site_25161 DeepMRMD:1;iRNA_m5C:0.999536712276489 25162 chr10 112335137 112335137 1 + A G KIRC 112335144 + 112335124 112335164 41 GTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG GTCATCTTCGTCCGGAACAGCGGTTGGCTTTATTGCATGTG < 41bp 1 0.258451909378425 1 0.190905511379242 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335144 chr10:112335137 synonymous SNV . 0 14 hm5C_associated_SNPs_24415 0 0 1 0 2 Ribosome 1 0.500231643915141 1 0.999536712169717 hm5C_site_25162 DeepMRMD:1;iRNA_m5C:0.999536712169717 25163 chr19 49469167 49469167 1 + C T KIRC 49469156 + 49469136 49469176 41 ACCAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGGTA ACCAGCGTGGCGGCCGCGCTCTCTTCCAGGATATCAAGGTA < 41bp 1 0.425865764501637 1 0.235357195138931 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469156 chr19:49469167 synonymous SNV . 0 32 hm5C_associated_SNPs_24416 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25163 DeepMRMD:1;iRNA_m5C:0.999536712157815 25164 chr1 145304610 145304610 1 + T C KIRC 145304596 + 145304576 145304616 41 GGAAGACAAAGTCGACTCAACTCTCATTGGCTCATCCTCTC GGAAGACAAAGTCGACTCAACTCTCATTGGCTCACCCTCTC < 41bp 1 0.0846070847257367 1 0.0535567104816437 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBPF10 ENSG00000163386 CDS Human other chr1:145304596 chr1:145304610 nonsynonymous SNV 0.002 2 35 hm5C_associated_SNPs_24418 0 0 0 0 0 chromatin 1 0.500231615826747 1 0.999536768346505 hm5C_site_25164 DeepMRMD:1;iRNA_m5C:0.999536768346505 25165 chr10 94109483 94109483 1 + T G KIRC 94109496 + 94109476 94109516 41 CAGATCATGTCTCTGCTACTCGAATCTTGTGTGGAGCCCTT CAGATCAGGTCTCTGCTACTCGAATCTTGTGTGGAGCCCTT < 41bp 1 0.472464400079859 1 0.508540332317352 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH5 ENSG00000198060 CDS Human protein_coding chr10:94109496 chr10:94109483 nonsynonymous SNV 0.998 1 8 hm5C_associated_SNPs_24419 0 0 1 0 1 Ribosome 1 0.500229813100354 0.982919335365296 0.999540373799291 hm5C_site_25165 DeepMRMD:0.982919335365296;iRNA_m5C:0.999540373799291 25166 chr6 149691195 149691195 1 + C G KIRC 149691182 + 149691162 149691202 41 TTCAGGTTTTACATGACCTGCGACAAAAATTCCCTGAAGTA TTCAGGTTTTACATGACCTGCGACAAAAATTCCGTGAAGTA < 41bp 1 0.494714490800968 1 0.143286943435669 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAB2 ENSG00000055208 CDS Human protein_coding chr6:149691182 chr6:149691195 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_24420 0 0 1 0 1 Cytosol 1 0.500231643918197 1 0.999536712163606 hm5C_site_25166 DeepMRMD:1;iRNA_m5C:0.999536712163606 25167 chr11 65386188 65386188 1 + G A KIRC 65386204 + 65386184 65386224 41 TCCTGCTACTCCCCTGAGAGCTCCCGGGGTGCAGCAGGGGG TCCTACTACTCCCCTGAGAGCTCCCGGGGTGCAGCAGGGGG < 41bp 1 0.228065998352681 1 0.277491867542267 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65386204 chr11:65386188 nonsynonymous SNV 0.996 4 5 hm5C_associated_SNPs_24421 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25167 DeepMRMD:1;iRNA_m5C:0.999536712157815 25168 chr3 5215726 5215726 1 + G C KIRC 5215729 + 5215709 5215749 41 TGCTTGGAAACAAGAGAGATCTTCCTAATGCCTTGGATGAG TGCTTGGAAACAAGAGACATCTTCCTAATGCCTTGGATGAG < 41bp 1 0.101357289439933 1 0.0707306265830994 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARL8B ENSG00000134108 CDS Human protein_coding chr3:5215729 chr3:5215726 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_24422 0 0 1 0 2 Ribosome 1 0.500231643763175 1 0.99953671247365 hm5C_site_25168 DeepMRMD:1;iRNA_m5C:0.99953671247365 25169 chr3 10191571 10191571 1 + G T KIRC 10191581 + 10191561 10191601 41 ACGAAGATCTGGAAGACCACCCAAATGTGCAGAAAGACCTG ACGAAGATCTTGAAGACCACCCAAATGTGCAGAAAGACCTG < 41bp 1 0.48600033241151 1 0.268844127655029 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VHL ENSG00000134086 CDS Human protein_coding chr3:10191581 chr3:10191571 synonymous SNV . 0 11 hm5C_associated_SNPs_24423 0 0 1 0 0 Ribosome 1 0.500231643944089 1 0.999536712111821 hm5C_site_25169 DeepMRMD:1;iRNA_m5C:0.999536712111821 25170 chr3 10191572 10191572 1 + G T KIRC 10191581 + 10191561 10191601 41 ACGAAGATCTGGAAGACCACCCAAATGTGCAGAAAGACCTG ACGAAGATCTGTAAGACCACCCAAATGTGCAGAAAGACCTG < 41bp 1 0.429243208646212 1 0.218339294195175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VHL ENSG00000134086 CDS Human protein_coding chr3:10191581 chr3:10191572 stopgain 1.000 1 12 hm5C_associated_SNPs_24424 0 0 1 0 0 Ribosome 1 0.500231644733902 1 0.999536710532196 hm5C_site_25170 DeepMRMD:1;iRNA_m5C:0.999536710532196 25171 chr12 104335645 104335645 1 + C T KIRC 104335627 + 104335607 104335647 41 AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGCGA AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGTGA < 41bp 1 0.319009261129234 1 0.393331229686737 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104335627 chr12:104335645 synonymous SNV . 0 39 hm5C_associated_SNPs_24425 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25171 DeepMRMD:1;iRNA_m5C:0.999536712157815 25172 chr1 218458677 218458677 1 + G C KIRC 218458666 + 218458646 218458686 41 CCGGCGCAGAAAAATGGCAGCCGCCGCTCCGGACTCACGTG CCGGCGCAGAAAAATGGCAGCCGCCGCTCCGCACTCACGTG < 41bp 1 0.316547914993646 1 0.296303927898407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RRP15 ENSG00000067533 CDS Human protein_coding chr1:218458666 chr1:218458677 nonsynonymous SNV 0.002 1 32 hm5C_associated_SNPs_24426 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25172 DeepMRMD:1;iRNA_m5C:0.999536712157815 25173 chr17 65909128 65909128 1 + A T KIRC 65909116 + 65909096 65909136 41 CTCGTTCAGGTACAGCTCTGCCATCCTATAGAAAATTTGTT CTCGTTCAGGTACAGCTCTGCCATCCTATAGATAATTTGTT < 41bp 1 0.00593686122950979 1 0.0214349925518036 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65909116 chr17:65909128 stopgain 1.000 0 33 hm5C_associated_SNPs_24427 0 0 1 0 0 Cytosol 1 0.500231643891297 1 0.999536712217405 hm5C_site_25173 DeepMRMD:1;iRNA_m5C:0.999536712217405 25174 chr3 10191593 10191593 1 + A T KIRC 10191581 + 10191561 10191601 41 ACGAAGATCTGGAAGACCACCCAAATGTGCAGAAAGACCTG ACGAAGATCTGGAAGACCACCCAAATGTGCAGTAAGACCTG < 41bp 1 0.532631395162733 1 0.337643206119537 experiment 0.934737209674533 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VHL ENSG00000134086 CDS Human protein_coding chr3:10191581 chr3:10191593 stopgain 0.979 1 33 hm5C_associated_SNPs_24430 1 0 1 0 0 Ribosome 1 0.500231643310378 1 0.999536713379243 hm5C_site_25174 DeepMRMD:1;iRNA_m5C:0.999536713379243 Von Hippel-Lindau syndrome Von Hippel-Lindau syndrome 25175 chr5 64082386 64082386 1 + G A KIRC 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TCCTTTTGATGACATCATTCCAAGAGAAATTAAAAGGCTGA < 41bp 1 0.568952728841727 1 0.72346693277359 experiment 0.862094542316545 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082386 synonymous SNV . 0 25 hm5C_associated_SNPs_24431 0 0 1 0 2 Nucleus 1 0.500231642160333 0.55306613445282 0.999536715679335 hm5C_site_25175 DeepMRMD:0.55306613445282;iRNA_m5C:0.999536715679335 25176 chr17 57334552 57334552 1 + C T KIRC 57334550 + 57334530 57334570 41 GTTTTTGAGGCCTTTCCTAACACTCCCATTAACATCGATAT GTTTTTGAGGCCTTTCCTAACATTCCCATTAACATCGATAT < 41bp 1 0.0672798090487664 1 0.111685693264008 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GDPD1 ENSG00000153982 CDS Human protein_coding chr17:57334550 chr17:57334552 nonsynonymous SNV 0.984 1 23 hm5C_associated_SNPs_24432 0 0 1 0 2 chromatin 1 0.500231643921103 1 0.999536712157795 hm5C_site_25176 DeepMRMD:1;iRNA_m5C:0.999536712157795 25177 chr8 121259910 121259910 1 + C T KIRC 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA TATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.0740973940853036 1 0.104654371738434 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259910 synonymous SNV . 0 1 hm5C_associated_SNPs_24433 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25177 DeepMRMD:1;iRNA_m5C:0.999536712157815 25178 chr10 75520019 75520019 1 + G A KIRC 75520010 + 75519990 75520030 41 TGGACAGAGTTTTGGAGGGCCCTCAGTGAGCCAGCCCAACC TGGACAGAGTTTTGGAGGGCCCTCAGTGAACCAGCCCAACC < 41bp 1 0.280412903491139 1 0.0991651117801666 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520010 chr10:75520019 nonsynonymous SNV 0.959 0 30 hm5C_associated_SNPs_24434 0 0 1 1 0 Nucleus 1 0.500231643843584 1 0.999536712312833 hm5C_site_25178 DeepMRMD:1;iRNA_m5C:0.999536712312833 25179 chr22 44332970 44332970 1 + C T KIRC 44332984 + 44332964 44333004 41 CATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC CATCCTTAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC < 41bp 1 0.603435112826838 1 0.110291212797165 experiment 0.793129774346324 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332984 chr22:44332970 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_24435 0 0 1 0 1 cytosol 1 0.500231643980346 1 0.999536712039308 hm5C_site_25179 DeepMRMD:1;iRNA_m5C:0.999536712039308 25180 chr2 39008932 39008932 1 + T G KIRC 39008927 + 39008907 39008947 41 CTCTCTGTGTGGCTGGGGTCCTGACTATAGACCCACCATAT CTCTCTGTGTGGCTGGGGTCCTGACGATAGACCCACCATAT < 41bp 1 0.558335105186641 1 0.3218152821064 experiment 0.883329789626719 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008927 chr2:39008932 synonymous SNV . 0 26 hm5C_associated_SNPs_24436 0 0 1 0 0 Ribosome 1 0.500231646360791 1 0.999536707278418 hm5C_site_25180 DeepMRMD:1;iRNA_m5C:0.999536707278418 25181 chr2 39008932 39008932 1 + T G KIRC 39008951 + 39008931 39008971 41 CTATAGACCCACCATATGGTCCAGAAAATTGCAGCAGCTCT CGATAGACCCACCATATGGTCCAGAAAATTGCAGCAGCTCT < 41bp 1 0.523371273069181 1 0.200735121965408 experiment 0.953257453861639 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008951 chr2:39008932 synonymous SNV . 0 2 hm5C_associated_SNPs_24437 0 0 1 0 0 Ribosome 1 0.500297083267132 1 0.999405833465737 hm5C_site_25181 DeepMRMD:1;iRNA_m5C:0.999405833465737 25182 chr7 142458497 142458497 1 + C A KIRC 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGA < 41bp 1 0.603378148766714 1 0.849263906478882 experiment 0.793243702466573 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458497 synonymous SNV . 0 41 hm5C_associated_SNPs_24438 0 0 0 0 3 Cytosol 1 0.500231643918838 0.301472187042236 0.999536712162324 hm5C_site_25182 DeepMRMD:0.301472187042236;iRNA_m5C:0.999536712162324 25183 chr7 142458497 142458497 1 + C A KIRC 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGATACCACT < 41bp 1 0.0882951294628742 1 0.0631517469882965 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458497 synonymous SNV . 0 34 hm5C_associated_SNPs_24439 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25183 DeepMRMD:1;iRNA_m5C:0.999536712157815 25184 chr7 142458497 142458497 1 + C A KIRC 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGATACCACTT < 41bp 1 0.288046088387709 1 0.132348299026489 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458497 synonymous SNV . 0 33 hm5C_associated_SNPs_24440 0 0 0 0 3 Cytosol 1 0.500231643921226 1 0.999536712157547 hm5C_site_25184 DeepMRMD:1;iRNA_m5C:0.999536712157547 25185 chr7 142458497 142458497 1 + C A KIRC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGATACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.10071167144343 1 0.0333912968635559 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458497 synonymous SNV . 0 18 hm5C_associated_SNPs_24442 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25185 DeepMRMD:1;iRNA_m5C:0.999536712157815 25186 chr7 142458497 142458497 1 + C A KIRC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGATACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.218736703491108 1 0.0931905806064606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458497 synonymous SNV . 0 17 hm5C_associated_SNPs_24443 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_25186 DeepMRMD:1;iRNA_m5C:0.999536712157816 25187 chr7 142458497 142458497 1 + C A KIRC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGATACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.30814467939379 1 0.189063370227814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458497 synonymous SNV . 0 15 hm5C_associated_SNPs_24444 0 0 0 0 3 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_25187 DeepMRMD:1;iRNA_m5C:0.999536712157814 25188 chr7 142458497 142458497 1 + C A KIRC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGATACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.585971171487962 1 0.346238017082214 experiment 0.828057657024075 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458497 synonymous SNV . 0 12 hm5C_associated_SNPs_24445 0 0 0 0 3 Cytosol 1 0.500231642869111 1 0.999536714261777 hm5C_site_25188 DeepMRMD:1;iRNA_m5C:0.999536714261777 25189 chr7 142458497 142458497 1 + C A KIRC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGATACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.255805210945914 1 0.112311393022537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458497 synonymous SNV . 0 3 hm5C_associated_SNPs_24446 0 0 0 0 3 Cytosol 1 0.500231649678121 1 0.999536700643759 hm5C_site_25189 DeepMRMD:1;iRNA_m5C:0.999536700643759 25190 chr7 142458497 142458497 1 + C A KIRC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG ATACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0936250890018987 1 0.0590954720973969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458497 synonymous SNV . 0 1 hm5C_associated_SNPs_24447 0 0 0 0 3 Cytosol 1 0.500231562341992 1 0.999536875316016 hm5C_site_25190 DeepMRMD:1;iRNA_m5C:0.999536875316016 25191 chr17 16285632 16285632 1 + C T KIRC 16285613 + 16285593 16285633 41 GCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATTC < 41bp 1 0.348107881328048 1 0.0929957032203674 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UBB ENSG00000170315 CDS Human protein_coding chr17:16285613 chr17:16285632 synonymous SNV . 0 40 hm5C_associated_SNPs_24449 0 0 1 0 0 Ribosome 1 0.499880055797363 1 1 hm5C_site_25191 DeepMRMD:1;iRNA_m5C:1 25192 chr3 10191590 10191590 1 + C T KIRC 10191581 + 10191561 10191601 41 ACGAAGATCTGGAAGACCACCCAAATGTGCAGAAAGACCTG ACGAAGATCTGGAAGACCACCCAAATGTGTAGAAAGACCTG < 41bp 1 0.450540465549694 1 0.102567940950394 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VHL ENSG00000134086 CDS Human protein_coding chr3:10191581 chr3:10191590 stopgain 0.941 0 30 hm5C_associated_SNPs_24450 1 0 1 0 0 Ribosome 1 0.500231643921774 1 0.999536712156453 hm5C_site_25192 DeepMRMD:1;iRNA_m5C:0.999536712156453 Hereditary cancer-predisposing syndrome Hereditary cancer-predisposing syndrome 25193 chr12 6493822 6493822 1 + C G KIRC 6493838 + 6493818 6493858 41 AGCACCGCATCTGCTGCTCCCGCTGCCCGCCAGGTGAGAGG AGCAGCGCATCTGCTGCTCCCGCTGCCCGCCAGGTGAGAGG < 41bp 1 0.380791257969082 1 0.183897733688354 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LTBR ENSG00000111321 CDS Human protein_coding chr12:6493838 chr12:6493822 nonsynonymous SNV 0.070 0 5 hm5C_associated_SNPs_24451 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_25193 DeepMRMD:1;iRNA_m5C:0.999536712157815 25194 chr18 77475251 77475251 1 + G C KIRC 77475248 + 77475228 77475268 41 CTCATCTACCTGGAGGAGATCCTGGTCCGTGTACACACTGA CTCATCTACCTGGAGGAGATCCTCGTCCGTGTACACACTGA < 41bp 1 0.0620772213822447 1 0.122587382793427 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77475248 chr18:77475251 synonymous SNV . 0 24 hm5C_associated_SNPs_24452 0 0 1 0 0 chromatin 1 0.500231643925886 1 0.999536712148227 hm5C_site_25194 DeepMRMD:1;iRNA_m5C:0.999536712148227 25195 chr17 19237309 19237309 1 + G T KIRC 19237313 + 19237293 19237333 41 TTAACCCTTTCCAGGTGAACCAGCCCCAGCCGCTGACACTG TTAACCCTTTCCAGGTTAACCAGCCCCAGCCGCTGACACTG < 41bp 1 0.595556313442573 1 0.489655375480652 experiment 0.808887373114853 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EPN2 ENSG00000072134 CDS Human protein_coding chr17:19237313 chr17:19237309 synonymous SNV . 0 17 hm5C_associated_SNPs_24454 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25195 DeepMRMD:1;iRNA_m5C:0.999536712157815 25196 chr19 3533336 3533336 1 + G A KIRC 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATCCTTGTCTGGAAATACCCCTCCCTGACCCAGGTGGCCA < 41bp 1 0.0980461017281701 1 0.118881672620773 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533336 synonymous SNV . 0 16 hm5C_associated_SNPs_24455 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25196 DeepMRMD:1;iRNA_m5C:0.999536712157815 25197 chr1 228246774 228246774 1 + G T KIRC 228246782 + 228246762 228246802 41 TGGTCGCAACCCGACTTCCGCGCCATCGGTGACTTCCTCAA TGGTCGCAACCCTACTTCCGCGCCATCGGTGACTTCCTCAA < 41bp 1 0.686700627222139 1 0.657427787780762 experiment 0.626598745555721 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WNT3A ENSG00000154342 CDS Human protein_coding chr1:228246782 chr1:228246774 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_24456 0 0 0 0 1 exosome 1 0.500231643921413 0.685144424438476 0.999536712157174 hm5C_site_25197 DeepMRMD:0.685144424438476;iRNA_m5C:0.999536712157174 25198 chr7 150772425 150772425 1 + G A KIRC 150772436 + 150772416 150772456 41 CCATGGGCGGCATCTGTGCCCTCTTTGGCCTGCCCTGGTTG CCATGGGCGACATCTGTGCCCTCTTTGGCCTGCCCTGGTTG < 41bp 1 0.205020818785733 1 0.0417695045471191 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150772436 chr7:150772425 nonsynonymous SNV 0.963 4 10 hm5C_associated_SNPs_24457 0 0 1 0 1 Ribosome 1 0.500231645389183 1 0.999536709221633 hm5C_site_25198 DeepMRMD:1;iRNA_m5C:0.999536709221633 25199 chr2 32631593 32631593 1 + G A KIRC 32631577 + 32631557 32631597 41 TTGATTTAAGTGATGATTTACTGGAGGATTCAGACAGTGAA TTGATTTAAGTGATGATTTACTGGAGGATTCAGACAATGAA < 41bp 1 0.304024300508274 1 0.502755165100098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32631577 chr2:32631593 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_24458 0 0 1 0 2 Nucleus 1 0.500231642523128 0.994489669799804 0.999536714953744 hm5C_site_25199 DeepMRMD:0.994489669799804;iRNA_m5C:0.999536714953744 25200 chr12 113379477 113379477 1 + C T KIRC 113379481 + 113379461 113379501 41 GGACCAGAGGGCCCGCCGTGCAGAGATCCTCAGTGAGATGC GGACCAGAGGGCCCGCTGTGCAGAGATCCTCAGTGAGATGC < 41bp 1 0.689663249440424 1 0.596476674079895 experiment 0.620673501119153 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113379481 chr12:113379477 nonsynonymous SNV 0.000 1 17 hm5C_associated_SNPs_24459 0 0 1 0 0 Nucleus 1 0.500231611165949 0.80704665184021 0.999536777668101 hm5C_site_25200 DeepMRMD:0.80704665184021;iRNA_m5C:0.999536777668101 25201 chr10 26994248 26994248 1 + C A KIRC 26994265 + 26994245 26994285 41 ACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTT ACAAAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTT < 41bp 1 0.223439174465599 1 0.111257880926132 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994265 chr10:26994248 nonsynonymous SNV 0.946 1 4 hm5C_associated_SNPs_24460 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25201 DeepMRMD:1;iRNA_m5C:0.999536712157815 25202 chr8 90937536 90937536 1 + A G KIRC 90937526 + 90937506 90937546 41 CTGAAGGATCAAGGGTGTTACCTAGGCCATAAGTCAAGCCA CTGAAGGATCAAGGGTGTTACCTAGGCCATGAGTCAAGCCA < 41bp 1 0.215168692267639 1 0.146576076745987 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90937526 chr8:90937536 nonsynonymous SNV 0.996 1 31 hm5C_associated_SNPs_24461 0 0 1 0 0 Cytosol 1 0.500242417489027 1 0.999515165021945 hm5C_site_25202 DeepMRMD:1;iRNA_m5C:0.999515165021945 25203 chr11 67017906 67017906 1 + C T KIRC 67017891 + 67017871 67017911 41 GAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACGCTAC GAAAGCCAAGATCCGGGGATCGTACCTCACTGTCATGCTAC < 41bp 1 0.092566602999075 1 0.119970798492432 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67017891 chr11:67017906 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_24462 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25203 DeepMRMD:1;iRNA_m5C:0.999536712157815 25204 chr1 171756896 171756896 1 + G A KIRC 171756878 + 171756858 171756898 41 TCTGGTTGTACCTTCAGGTCCCCTTTCTGTCTGTGGGTGGG TCTGGTTGTACCTTCAGGTCCCCTTTCTGTCTGTGGGTAGG < 41bp 1 0.0641499132515896 1 0.0141966640949249 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171756878 chr1:171756896 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_24463 0 0 1 0 1 Ribosome 1 0.500231643921105 1 0.99953671215779 hm5C_site_25204 DeepMRMD:1;iRNA_m5C:0.99953671215779 25205 chr6 109484145 109484145 1 + G T KIRC 109484132 + 109484112 109484152 41 CAATACGAGTTCATAATCTTCAAATGAAATTGAGAAGAGAT CAATACGAGTTCATAATCTTCAAATGAAATTGATAAGAGAT < 41bp 1 0.25823479944016 1 0.457535445690155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP57L1 ENSG00000183137 CDS Human protein_coding chr6:109484132 chr6:109484145 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_24464 0 0 1 0 0 chromatin 1 0.500231585314431 1 0.999536829371137 hm5C_site_25205 DeepMRMD:1;iRNA_m5C:0.999536829371137 25206 chr17 37681093 37681093 1 + C T KIRC 37681077 + 37681057 37681097 41 ACTGAGCCTGTGAAGAACAGCAGCCCAGCACCACCTCAGCC ACTGAGCCTGTGAAGAACAGCAGCCCAGCACCACCTTAGCC < 41bp 1 0.340956655929301 1 0.403229922056198 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37681077 chr17:37681093 stopgain 0.996 1 37 hm5C_associated_SNPs_24465 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25206 DeepMRMD:1;iRNA_m5C:0.999536712157815 25207 chr1 22336337 22336337 1 + A G KIRC 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGGCTGGAT < 41bp 1 0.645045475452473 1 0.182890564203262 experiment 0.709909049095055 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336337 nonsynonymous SNV 0.898 0 35 hm5C_associated_SNPs_24467 0 0 0 0 1 Endoplasmic reticulum 1 0.500224779548343 1 0.999550440903314 hm5C_site_25207 DeepMRMD:1;iRNA_m5C:0.999550440903314 25208 chr1 22336337 22336337 1 + A G KIRC 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTCGAGTCTCCGCCTTCATCGGCTGGATTGA < 41bp 1 0.422436466092754 1 0.0461675524711609 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336337 nonsynonymous SNV 0.898 0 32 hm5C_associated_SNPs_24468 0 0 0 0 1 Endoplasmic reticulum 1 0.500231670736348 1 0.999536658527304 hm5C_site_25208 DeepMRMD:1;iRNA_m5C:0.999536658527304 25209 chr1 22336337 22336337 1 + A G KIRC 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTCGAGTCTCCGCCTTCATCGGCTGGATTGAGGA < 41bp 1 0.402068796212421 1 0.852089285850525 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336337 nonsynonymous SNV 0.898 0 29 hm5C_associated_SNPs_24469 0 0 0 0 1 Endoplasmic reticulum 1 0.500231607208973 0.29582142829895 0.999536785582054 hm5C_site_25209 DeepMRMD:0.29582142829895;iRNA_m5C:0.999536785582054 25210 chr1 22336337 22336337 1 + A G KIRC 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTCGAGTCTCCGCCTTCATCGGCTGGATTGAGGAGGT < 41bp 1 0.432657719092541 1 0.34706449508667 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336337 nonsynonymous SNV 0.898 0 26 hm5C_associated_SNPs_24470 0 0 0 0 1 Endoplasmic reticulum 1 0.500231615287508 1 0.999536769424985 hm5C_site_25210 DeepMRMD:1;iRNA_m5C:0.999536769424985 25211 chr2 56419911 56419911 1 + C T KIRC 56419925 + 56419905 56419945 41 GGCCAGCCTGTGCCAACTCACAGCCTCCACCGCACCCTACG GGCCAGTCTGTGCCAACTCACAGCCTCCACCGCACCCTACG < 41bp 1 0.57722428426596 1 0.614300847053528 experiment 0.845551431468081 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56419925 chr2:56419911 synonymous SNV . 0 7 hm5C_associated_SNPs_24472 0 0 0 0 0 exosome 1 0.500231643921092 0.771398305892944 0.999536712157815 hm5C_site_25211 DeepMRMD:0.771398305892944;iRNA_m5C:0.999536712157815 25212 chr19 1913029 1913029 1 + C G KIRC 1913048 + 1913028 1913068 41 TCGCCCGACGGCGCCCTGGGCACCCGCTTCCGCATCCACGC TGGCCCGACGGCGCCCTGGGCACCCGCTTCCGCATCCACGC < 41bp 1 0.229939893051744 1 0.0792292058467865 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADAT3 ENSG00000213638 CDS Human protein_coding chr19:1913048 chr19:1913029 nonsynonymous SNV 0.047 0 2 hm5C_associated_SNPs_24473 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_25212 DeepMRMD:1;iRNA_m5C:0.999536712157816 25213 chr19 1913030 1913030 1 + G T KIRC 1913048 + 1913028 1913068 41 TCGCCCGACGGCGCCCTGGGCACCCGCTTCCGCATCCACGC TCTCCCGACGGCGCCCTGGGCACCCGCTTCCGCATCCACGC < 41bp 1 0.278208702595532 1 0.106430888175964 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADAT3 ENSG00000213638 CDS Human protein_coding chr19:1913048 chr19:1913030 synonymous SNV . 0 3 hm5C_associated_SNPs_24474 0 0 1 0 0 exosome 1 0.500231643920784 1 0.999536712158433 hm5C_site_25213 DeepMRMD:1;iRNA_m5C:0.999536712158433 25214 chr21 45736400 45736400 1 + G A KIRC 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCAGA < 41bp 1 0.372815602201313 1 0.252724230289459 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736400 nonsynonymous SNV 0.689 5 39 hm5C_associated_SNPs_24475 0 0 1 0 2 Ribosome 1 0.500231719153213 1 0.999536561693573 hm5C_site_25214 DeepMRMD:1;iRNA_m5C:0.999536561693573 25215 chr21 45736400 45736400 1 + G A KIRC 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCAGATC < 41bp 1 0.0757374825055676 1 0.0883206725120544 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736400 nonsynonymous SNV 0.689 5 37 hm5C_associated_SNPs_24476 0 0 1 0 2 Ribosome 1 0.50023164392629 1 0.999536712147419 hm5C_site_25215 DeepMRMD:1;iRNA_m5C:0.999536712147419 25216 chr21 45736400 45736400 1 + G A KIRC 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCAGATCC < 41bp 1 0.073185315028227 1 0.0757906138896942 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736400 nonsynonymous SNV 0.689 5 36 hm5C_associated_SNPs_24477 0 0 1 0 2 Ribosome 1 0.500231643921152 1 0.999536712157695 hm5C_site_25216 DeepMRMD:1;iRNA_m5C:0.999536712157695 25217 chr21 45736400 45736400 1 + G A KIRC 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCAGATCCT < 41bp 1 0.35002351965199 1 0.325504958629608 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736400 nonsynonymous SNV 0.689 5 35 hm5C_associated_SNPs_24478 0 0 1 0 2 Ribosome 1 0.500231643925463 1 0.999536712149074 hm5C_site_25217 DeepMRMD:1;iRNA_m5C:0.999536712149074 25218 chr6 7580989 7580989 1 + G A KIRC 7580985 + 7580965 7581005 41 GCAGAAAGCAAACAGTAGTGCGACGGAGACAATAAACAAAC GCAGAAAGCAAACAGTAGTGCGACAGAGACAATAAACAAAC < 41bp 1 0.650057539516972 1 0.570357024669647 experiment 0.699884920966056 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7580985 chr6:7580989 synonymous SNV . 0 25 hm5C_associated_SNPs_24479 0 0 1 0 0 Nucleus 1 0.500264274786367 0.859285950660706 0.999471450427267 hm5C_site_25218 DeepMRMD:0.859285950660706;iRNA_m5C:0.999471450427267 25219 chr1 249212354 249212354 1 + A C KIRC 249212364 + 249212344 249212384 41 GCCTGTGTGTATCTGGAGAGCAATGCTGACACAACATCTCA GCCTGTGTGTCTCTGGAGAGCAATGCTGACACAACATCTCA < 41bp 1 0.437282204257554 1 0.134767860174179 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212364 chr1:249212354 nonsynonymous SNV 0.768 2 11 hm5C_associated_SNPs_24480 0 0 1 0 0 Cytosol 1 0.500231637605845 1 0.999536724788309 hm5C_site_25219 DeepMRMD:1;iRNA_m5C:0.999536724788309 25220 chr7 142460779 142460779 1 + G T KIRC 142460769 + 142460749 142460789 41 GGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC GGACAGCTCCAAGGAGTTGTCTCCTGGGGTTATGGCTGTGC < 41bp 1 0.578976024540278 1 0.761413872241974 experiment 0.842047950919445 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460769 chr7:142460779 nonsynonymous SNV 0.244 1 31 hm5C_associated_SNPs_24481 0 0 0 0 0 Cytosol 1 0.500231643921092 0.477172255516052 0.999536712157815 hm5C_site_25220 DeepMRMD:0.477172255516052;iRNA_m5C:0.999536712157815 25221 chr7 142460779 142460779 1 + G T KIRC 142460771 + 142460751 142460791 41 ACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC ACAGCTCCAAGGAGTTGTCTCCTGGGGTTATGGCTGTGCCC < 41bp 1 0.322279680323893 1 0.862074136734009 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460771 chr7:142460779 nonsynonymous SNV 0.244 1 29 hm5C_associated_SNPs_24482 0 0 0 0 0 Cytosol 1 0.500231643921092 0.275851726531982 0.999536712157815 hm5C_site_25221 DeepMRMD:0.275851726531982;iRNA_m5C:0.999536712157815 25222 chr7 142460779 142460779 1 + G T KIRC 142460784 + 142460764 142460804 41 GTTGTCTCCTGGGGTGATGGCTGTGCCCAGAAGAACAAGCC GTTGTCTCCTGGGGTTATGGCTGTGCCCAGAAGAACAAGCC < 41bp 1 0.355295844838446 1 0.573344588279724 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460784 chr7:142460779 nonsynonymous SNV 0.244 1 16 hm5C_associated_SNPs_24484 0 0 0 0 0 Cytosol 1 0.500231643919533 0.853310823440552 0.999536712160934 hm5C_site_25222 DeepMRMD:0.853310823440552;iRNA_m5C:0.999536712160934 25223 chr12 53685805 53685805 1 + T C KIRC 53685807 + 53685787 53685827 41 GGGAAAGCATGCCCAGCCTCCAAGCACTGCCTGTCACCCGG GGGAAAGCATGCCCAGCCCCCAAGCACTGCCTGTCACCCGG < 41bp 1 0.326430264780642 1 0.454618752002716 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53685807 chr12:53685805 nonsynonymous SNV 0.928 4 19 hm5C_associated_SNPs_24485 0 0 1 0 2 Nucleus 1 0.500231643853617 1 0.999536712292765 hm5C_site_25223 DeepMRMD:1;iRNA_m5C:0.999536712292765 25224 chr2 11312070 11312070 1 + G A KIRC 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCTATGTACTTTCATCAACGCGGCCAGTAAGTT < 41bp 1 0.500488593957338 1 0.187702029943466 experiment 0.999022812085324 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312070 nonsynonymous SNV 0.499 3 26 hm5C_associated_SNPs_24486 0 0 0 0 1 Ribosome 1 0.500231643921584 1 0.999536712156833 hm5C_site_25224 DeepMRMD:1;iRNA_m5C:0.999536712156833 25225 chr2 61336340 61336340 1 + G C KIRC 61336344 + 61336324 61336364 41 TAACTTAGAAACAACAGTCACTGTTTTCAGAAGAAGAAGAA TAACTTAGAAACAACACTCACTGTTTTCAGAAGAAGAAGAA < 41bp 1 0.100906821038059 1 0.0709719955921173 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61336344 chr2:61336340 nonsynonymous SNV 0.892 4 17 hm5C_associated_SNPs_24487 0 0 1 0 2 cytosol 1 0.500231817985863 1 0.999536364028275 hm5C_site_25225 DeepMRMD:1;iRNA_m5C:0.999536364028275 25226 chr8 145735861 145735861 1 + C A KIRC 145735855 + 145735835 145735875 41 GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT GTGGTCTGCTCCATCGCTGGCTCCTCACTGGGTGGGACCTT < 41bp 1 0.269319085902985 1 0.0613039135932922 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735855 chr8:145735861 synonymous SNV . 0 27 hm5C_associated_SNPs_24488 0 0 1 0 1 Ribosome 1 0.500231643921377 1 0.999536712157246 hm5C_site_25226 DeepMRMD:1;iRNA_m5C:0.999536712157246 25227 chr8 145735861 145735861 1 + C A KIRC 145735858 + 145735838 145735878 41 GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT GTCTGCTCCATCGCTGGCTCCTCACTGGGTGGGACCTTGCT < 41bp 1 0.147475765664536 1 0.183699458837509 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735858 chr8:145735861 synonymous SNV . 0 24 hm5C_associated_SNPs_24489 0 0 1 0 1 Ribosome 1 0.50023065831058 1 0.999538683378841 hm5C_site_25227 DeepMRMD:1;iRNA_m5C:0.999538683378841 25228 chr20 62373331 62373331 1 + T A KIRC 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GACCTGGCCAGTGACCAGTCCTCACCGTCCACCCCGTCACC < 41bp 1 0.138852344295956 1 0.056773841381073 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373331 synonymous SNV . 0 24 hm5C_associated_SNPs_24490 0 0 1 0 1 Cytosol 1 0.500231634742447 1 0.999536730515107 hm5C_site_25228 DeepMRMD:1;iRNA_m5C:0.999536730515107 25229 chr17 17207114 17207114 1 + C A KIRC 17207107 + 17207087 17207127 41 TTCTGGGTGTCGGAGCAGTACGGCCGCCTGCGGCCAGGGCT TTCTGGGTGTCGGAGCAGTACGGCCGCATGCGGCCAGGGCT < 41bp 1 0.69694966380844 1 0.268768310546875 experiment 0.606100672383121 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NT5M ENSG00000205309 CDS Human protein_coding chr17:17207107 chr17:17207114 nonsynonymous SNV 0.266 3 28 hm5C_associated_SNPs_24491 0 0 0 0 0 Cytosol 1 0.500231643921109 1 0.999536712157782 hm5C_site_25229 DeepMRMD:1;iRNA_m5C:0.999536712157782 25230 chr14 35761756 35761756 1 + T C KIRC 35761743 + 35761723 35761763 41 CCATTTTTTCACCCGAGGGTCGGCTCTACCAAGTAGGTGAG CCATTTTTTCACCCGAGGGTCGGCTCTACCAAGCAGGTGAG < 41bp 1 0.378486562476442 1 0.182581543922424 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PSMA6 ENSG00000100902 CDS Human protein_coding chr14:35761743 chr14:35761756 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_24492 0 0 1 0 2 Ribosome 1 0.50023164409166 1 0.999536711816681 hm5C_site_25230 DeepMRMD:1;iRNA_m5C:0.999536711816681 25231 chr8 104438314 104438314 1 + A G KIRC 104438295 + 104438275 104438315 41 TATTTCTAGGTTGGTGATGACAAAACTGTGAAGCAGTGGAA TATTTCTAGGTTGGTGATGACAAAACTGTGAAGCAGTGGGA < 41bp 1 0.612647031768385 1 0.505901634693146 experiment 0.774705936463229 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438295 chr8:104438314 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_24493 0 0 1 0 2 Nucleus 1 0.500231643921092 0.988196730613708 0.999536712157815 hm5C_site_25231 DeepMRMD:0.988196730613708;iRNA_m5C:0.999536712157815 25232 chr8 104438314 104438314 1 + A G KIRC 104438308 + 104438288 104438328 41 GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA GTGATGACAAAACTGTGAAGCAGTGGGAAATGGATGGGCCA < 41bp 1 0.424191249927372 1 0.539426386356354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438308 chr8:104438314 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_24494 0 0 1 0 2 Nucleus 1 0.500231644059151 0.921147227287292 0.999536711881698 hm5C_site_25232 DeepMRMD:0.921147227287292;iRNA_m5C:0.999536711881698 25233 chr8 104438314 104438314 1 + A G KIRC 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGGAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC < 41bp 1 0.535740767052279 1 0.398322969675064 experiment 0.928518465895442 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438314 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_24495 0 0 1 0 2 Nucleus 1 0.500231643921282 1 0.999536712157435 hm5C_site_25233 DeepMRMD:1;iRNA_m5C:0.999536712157435 25234 chr17 4800542 4800542 1 + A C KIRC 4800528 + 4800508 4800548 41 GCCTCAGTCCGCTCTGGGGGCAGCAGCCAAGTTTACTTCAT GCCTCAGTCCGCTCTGGGGGCAGCAGCCAAGTTTCCTTCAT < 41bp 1 0.600378724753829 1 0.367748826742172 experiment 0.799242550492343 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800528 chr17:4800542 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_24496 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_25234 DeepMRMD:1;iRNA_m5C:0.999536712157813 25235 chr17 4800542 4800542 1 + A C KIRC 4800531 + 4800511 4800551 41 TCAGTCCGCTCTGGGGGCAGCAGCCAAGTTTACTTCATGAC TCAGTCCGCTCTGGGGGCAGCAGCCAAGTTTCCTTCATGAC < 41bp 1 0.129293966716447 1 0.371016412973404 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800531 chr17:4800542 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_24497 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25235 DeepMRMD:1;iRNA_m5C:0.999536712157815 25236 chr17 59161835 59161835 1 + C G KIRC 59161840 + 59161820 59161860 41 CATTGCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCAT CATTGCAGGATCCAGGCAGTCCGCTCTGACCCCGTCAGCAT < 41bp 1 0.29642758233638 1 0.158336400985718 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59161840 chr17:59161835 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_24498 0 0 1 0 2 Cytosol 1 0.500231643877121 1 0.999536712245757 hm5C_site_25236 DeepMRMD:1;iRNA_m5C:0.999536712245757 25237 chr2 62934347 62934347 1 + A G KIRC 62934334 + 62934314 62934354 41 TTGACTGATCATCATGGCTTCAGTTTGGAAGAGACTGCAGC TTGACTGATCATCATGGCTTCAGTTTGGAAGAGGCTGCAGC < 41bp 1 0.116811537938613 1 0.0460072755813599 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EHBP1 ENSG00000115504 CDS Human protein_coding chr2:62934334 chr2:62934347 synonymous SNV . 0 34 hm5C_associated_SNPs_24499 0 0 1 0 1 Nucleus 1 0.500232939070185 1 0.999534121859631 hm5C_site_25237 DeepMRMD:1;iRNA_m5C:0.999534121859631 25238 chr13 88329572 88329572 1 + G T KIRC 88329589 + 88329569 88329609 41 GTTGAATAGCACCGGGGCCCCCGCGAGCTTGGGCGCAGGCG GTTTAATAGCACCGGGGCCCCCGCGAGCTTGGGCGCAGGCG < 41bp 1 0.617854072398499 1 0.413484215736389 experiment 0.764291855203002 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88329589 chr13:88329572 nonsynonymous SNV 0.621 0 4 hm5C_associated_SNPs_24500 0 0 0 0 0 nucleus 1 0.500231643904096 1 0.999536712191808 hm5C_site_25238 DeepMRMD:1;iRNA_m5C:0.999536712191808 25239 chr3 10191563 10191563 1 + G T KIRC 10191581 + 10191561 10191601 41 ACGAAGATCTGGAAGACCACCCAAATGTGCAGAAAGACCTG ACTAAGATCTGGAAGACCACCCAAATGTGCAGAAAGACCTG < 41bp 1 0.562452367214569 1 0.347251236438751 experiment 0.875095265570862 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VHL ENSG00000134086 CDS Human protein_coding chr3:10191581 chr3:10191563 stopgain 0.867 1 3 hm5C_associated_SNPs_24501 1 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25239 DeepMRMD:1;iRNA_m5C:0.999536712157815 not provided not provided 25240 chr17 37360863 37360863 1 + A T KIRC 37360846 + 37360826 37360866 41 CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCA CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCTTCA < 41bp 1 0.303567567799894 1 0.253100156784058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360846 chr17:37360863 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_24502 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_25240 DeepMRMD:1;iRNA_m5C:0.999536712157815 25241 chr17 37360863 37360863 1 + A T KIRC 37360862 + 37360842 37360882 41 CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA CAGGCCAAGAAGGAGGAGATCTTCAAGACTTTATCCAAGGA < 41bp 1 0.526723648229797 1 0.212976187467575 experiment 0.946552703540407 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360862 chr17:37360863 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_24503 0 0 1 0 1 chromatin 1 0.500231643921235 1 0.99953671215753 hm5C_site_25241 DeepMRMD:1;iRNA_m5C:0.99953671215753 25242 chr17 37360863 37360863 1 + A T KIRC 37360876 + 37360856 37360896 41 GGAGATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGA GGAGATCTTCAAGACTTTATCCAAGGAGGAAGAGACCAAGA < 41bp 1 0.51562382429696 1 0.908617794513702 experiment 0.968752351406081 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360876 chr17:37360863 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_24504 0 0 1 0 1 chromatin 1 0.500231643921092 0.182764410972596 0.999536712157815 hm5C_site_25242 DeepMRMD:0.182764410972596;iRNA_m5C:0.999536712157815 25243 chr9 80915578 80915578 1 + G T KIRC 80915575 + 80915555 80915595 41 AAGGAGTTGGCATTAGTGTTCTTGGTAAGATTTACTTTTGA AAGGAGTTGGCATTAGTGTTCTTTGTAAGATTTACTTTTGA < 41bp 1 0.131040962010975 1 0.272375226020813 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80915575 chr9:80915578 stopgain 0.995 1 24 hm5C_associated_SNPs_24505 0 0 1 0 2 Ribosome 1 0.50023164392091 1 0.99953671215818 hm5C_site_25243 DeepMRMD:1;iRNA_m5C:0.99953671215818 25244 chr20 46256718 46256718 1 + A T KIRC 46256733 + 46256713 46256753 41 GAAAGAACATTTCCATCAAACCCTGAGAGCTTTATTACCAG GAAAGTACATTTCCATCAAACCCTGAGAGCTTTATTACCAG < 41bp 1 0.12220628282613 1 0.170586556196213 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46256733 chr20:46256718 nonsynonymous SNV 0.881 4 6 hm5C_associated_SNPs_24507 0 0 1 0 2 Ribosome 1 0.500231643920553 1 0.999536712158894 hm5C_site_25244 DeepMRMD:1;iRNA_m5C:0.999536712158894 25245 chr15 64448267 64448267 1 + G A KIRC 64448270 - 64448250 64448290 41 AAGGATGTGATCATCGCAGACTGCGGCAAGATCGAGGTGGA AAGGATGTGATCATCGCAGACTGTGGCAAGATCGAGGTGGA < 41bp 1 0.495824389059014 1 0.334411561489105 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPIB ENSG00000166794 CDS Human protein_coding chr15:64448270 chr15:64448267 synonymous SNV . 0 24 hm5C_associated_SNPs_24510 0 0 1 0 1 Ribosome 1 0.500231661831372 1 0.999536676337256 hm5C_site_25245 DeepMRMD:1;iRNA_m5C:0.999536676337256 25246 chr15 64448267 64448267 1 + G A KIRC 64448276 - 64448256 64448296 41 CCCCTGAAGGATGTGATCATCGCAGACTGCGGCAAGATCGA CCCCTGAAGGATGTGATCATCGCAGACTGTGGCAAGATCGA < 41bp 1 0.682241964282321 1 0.545965909957886 experiment 0.635516071435357 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448276 chr15:64448267 synonymous SNV . 0 30 hm5C_associated_SNPs_24511 0 0 1 0 1 Ribosome 1 0.50023162743274 0.908068180084228 0.99953674513452 hm5C_site_25246 DeepMRMD:0.908068180084228;iRNA_m5C:0.99953674513452 25247 chr15 64448267 64448267 1 + G A KIRC 64448279 - 64448259 64448299 41 AAACCCCTGAAGGATGTGATCATCGCAGACTGCGGCAAGAT AAACCCCTGAAGGATGTGATCATCGCAGACTGTGGCAAGAT < 41bp 1 0.412459849313763 1 0.0365983843803406 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448279 chr15:64448267 synonymous SNV . 0 33 hm5C_associated_SNPs_24512 0 0 1 0 1 Ribosome 1 0.500231334876793 1 0.999537330246413 hm5C_site_25247 DeepMRMD:1;iRNA_m5C:0.999537330246413 25248 chr15 64448268 64448268 1 + C T KIRC 64448270 - 64448250 64448290 41 AAGGATGTGATCATCGCAGACTGCGGCAAGATCGAGGTGGA AAGGATGTGATCATCGCAGACTACGGCAAGATCGAGGTGGA < 41bp 1 0.592861425248335 1 0.259901285171509 experiment 0.814277149503331 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPIB ENSG00000166794 CDS Human protein_coding chr15:64448270 chr15:64448268 nonsynonymous SNV 0.934 2 23 hm5C_associated_SNPs_24514 0 0 1 0 1 Ribosome 1 0.500231643919077 1 0.999536712161845 hm5C_site_25248 DeepMRMD:1;iRNA_m5C:0.999536712161845 25249 chr15 64448268 64448268 1 + C T KIRC 64448279 - 64448259 64448299 41 AAACCCCTGAAGGATGTGATCATCGCAGACTGCGGCAAGAT AAACCCCTGAAGGATGTGATCATCGCAGACTACGGCAAGAT < 41bp 1 0.396237203308394 1 0.051296591758728 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448279 chr15:64448268 nonsynonymous SNV 0.934 2 32 hm5C_associated_SNPs_24516 0 0 1 0 1 Ribosome 1 0.500231334935515 1 0.999537330128969 hm5C_site_25249 DeepMRMD:1;iRNA_m5C:0.999537330128969 25250 chr7 138944050 138944050 1 + A G KIRC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAGGCGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.591281417887649 1 0.641478538513184 experiment 0.817437164224702 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944050 nonsynonymous SNV 0.997 2 13 hm5C_associated_SNPs_24517 0 0 1 0 2 Cytosol 1 0.500231643921093 0.717042922973632 0.999536712157813 hm5C_site_25250 DeepMRMD:0.717042922973632;iRNA_m5C:0.999536712157813 25251 chr2 29006790 29006790 1 + C A KIRC 29006781 + 29006761 29006801 41 TTTTATTTATAGGATTGTCACCAGACCTGCAATCTATGGAG TTTTATTTATAGGATTGTCACCAGACCTGAAATCTATGGAG < 41bp 1 0.559922568334875 1 0.70201176404953 experiment 0.88015486333025 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29006781 chr2:29006790 nonsynonymous SNV 0.997 2 30 hm5C_associated_SNPs_24518 0 0 1 0 2 Ribosome 1 0.500231643475909 0.59597647190094 0.999536713048182 hm5C_site_25251 DeepMRMD:0.59597647190094;iRNA_m5C:0.999536713048182 25252 chr12 51449970 51449970 1 + T G KIRC 51449969 + 51449949 51449989 41 CAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAAC CAATACATGATATCTTGGCTCGGAGAGAGTGTTTCTCTAAC < 41bp 1 0.647243546939397 1 0.545406341552734 experiment 0.705512906121206 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449969 chr12:51449970 nonsynonymous SNV 0.147 3 22 hm5C_associated_SNPs_24519 0 0 1 0 2 chromatin 1 0.500231643921092 0.909187316894532 0.999536712157815 hm5C_site_25252 DeepMRMD:0.909187316894532;iRNA_m5C:0.999536712157815 25253 chr11 70201752 70201752 1 + G T KIRC 70201745 + 70201725 70201765 41 TCCGTTTTCTTTCCTCGAAGCTCCACAGGCTCCCAGGATGG TCCGTTTTCTTTCCTCGAAGCTCCACATGCTCCCAGGATGG < 41bp 1 0.475998768301955 1 0.655317425727844 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70201745 chr11:70201752 nonsynonymous SNV 0.999 2 28 hm5C_associated_SNPs_24522 0 0 1 0 1 Ribosome 1 0.500231643921093 0.689365148544312 0.999536712157815 hm5C_site_25253 DeepMRMD:0.689365148544312;iRNA_m5C:0.999536712157815 25254 chr3 41275110 41275110 1 + A G KIRC 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACCTGTGCAGCTGGAATTCTTTCTGACCTCACTTGCAAT < 41bp 1 0.103065333790202 1 0.102388143539429 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275110 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_24523 0 0 1 0 1 Nucleus 1 0.50023164391709 1 0.99953671216582 hm5C_site_25254 DeepMRMD:1;iRNA_m5C:0.99953671216582 25255 chr1 113240981 113240981 1 + C A KIRC 113240962 + 113240942 113240982 41 AAAGATGAGCGTGAAGGCAACAGCCCATCCTTCTTCAACCC AAAGATGAGCGTGAAGGCAACAGCCCATCCTTCTTCAACAC < 41bp 1 0.221679863398065 1 0.443131506443024 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113240962 chr1:113240981 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_24524 0 0 1 0 1 Cytosol 1 0.500354387082785 1 0.999291225834431 hm5C_site_25255 DeepMRMD:1;iRNA_m5C:0.999291225834431 25256 chr7 142459716 142459716 1 + C A KIRC 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCA < 41bp 1 0.394035497494748 1 0.350308358669281 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459716 nonsynonymous SNV 0.007 0 41 hm5C_associated_SNPs_24525 0 0 0 0 1 Cytosol 1 0.500231644110331 1 0.999536711779337 hm5C_site_25256 DeepMRMD:1;iRNA_m5C:0.999536711779337 25257 chr7 142459716 142459716 1 + C A KIRC 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATCCGCCACCCCAAATACGA < 41bp 1 0.275916928585573 1 0.0872743427753448 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459716 nonsynonymous SNV 0.007 0 34 hm5C_associated_SNPs_24526 0 0 0 0 1 Cytosol 1 0.50023162431646 1 0.999536751367081 hm5C_site_25257 DeepMRMD:1;iRNA_m5C:0.999536751367081 25258 chr7 142459716 142459716 1 + C A KIRC 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATCCGCCACCCCAAATACGACAG < 41bp 1 0.319959132636898 1 0.359526038169861 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459716 nonsynonymous SNV 0.007 0 31 hm5C_associated_SNPs_24527 0 0 0 0 1 Cytosol 1 0.500231643927528 1 0.999536712144945 hm5C_site_25258 DeepMRMD:1;iRNA_m5C:0.999536712144945 25259 chr7 142459716 142459716 1 + C A KIRC 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATCCGCCACCCCAAATACGACAGGAA < 41bp 1 0.108805553083593 1 0.0809111595153809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459716 nonsynonymous SNV 0.007 0 28 hm5C_associated_SNPs_24529 0 0 0 0 1 Cytosol 1 0.500231635330298 1 0.999536729339404 hm5C_site_25259 DeepMRMD:1;iRNA_m5C:0.999536729339404 25260 chr7 142459716 142459716 1 + C A KIRC 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATCCGCCACCCCAAATACGACAGGAAG < 41bp 1 0.213917582442503 1 0.132805168628693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459716 nonsynonymous SNV 0.007 0 27 hm5C_associated_SNPs_24530 0 0 0 0 1 Cytosol 1 0.50023164874571 1 0.999536702508581 hm5C_site_25260 DeepMRMD:1;iRNA_m5C:0.999536702508581 25261 chr7 142459716 142459716 1 + C A KIRC 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATCCGCCACCCCAAATACGACAGGAAGAC < 41bp 1 0.460464968704805 1 0.280278027057648 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459716 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_24531 0 0 0 0 1 Cytosol 1 0.500231644026643 1 0.999536711946715 hm5C_site_25261 DeepMRMD:1;iRNA_m5C:0.999536711946715 25262 chr7 142459716 142459716 1 + C A KIRC 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATCATCCGCCACCCCAAATACGACAGGAAGACT < 41bp 1 0.405418329001828 1 0.671591877937317 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459716 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_24532 0 0 0 0 1 Cytosol 1 0.500231643921092 0.656816244125366 0.999536712157815 hm5C_site_25262 DeepMRMD:0.656816244125366;iRNA_m5C:0.999536712157815 25263 chr7 142459716 142459716 1 + C A KIRC 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATCCGCCACCCCAAATACGACAGGAAGACTC < 41bp 1 0.429611167665915 1 0.42525789141655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459716 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_24533 0 0 0 0 1 Cytosol 1 0.500231644201746 1 0.999536711596508 hm5C_site_25263 DeepMRMD:1;iRNA_m5C:0.999536711596508 25264 chr7 142459716 142459716 1 + C A KIRC 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATCCGCCACCCCAAATACGACAGGAAGACTCT < 41bp 1 0.463589792014674 1 0.390525251626968 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459716 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_24534 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25264 DeepMRMD:1;iRNA_m5C:0.999536712157815 25265 chr7 142459716 142459716 1 + C A KIRC 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCCCAAATACGACAGGAAGACTCTGAACAATGACATCATGT < 41bp 1 0.53016480230308 1 0.121883362531662 experiment 0.93967039539384 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459716 nonsynonymous SNV 0.007 0 5 hm5C_associated_SNPs_24535 0 0 0 0 1 Cytosol 1 0.500231643906759 1 0.999536712186482 hm5C_site_25265 DeepMRMD:1;iRNA_m5C:0.999536712186482 25266 chr9 139228923 139228923 1 + G C KIRC 139228915 + 139228895 139228935 41 TCTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGG TCTGCACAGGATGGAGGCGTCCTGCCTACAGCTGGCGCTGG < 41bp 1 0.14743600698188 1 0.0742316246032715 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228915 chr9:139228923 nonsynonymous SNV 0.853 2 29 hm5C_associated_SNPs_24536 0 0 1 0 1 Cytosol 1 0.500231680513916 1 0.999536638972167 hm5C_site_25266 DeepMRMD:1;iRNA_m5C:0.999536638972167 25267 chr9 139228923 139228923 1 + G C KIRC 139228916 + 139228896 139228936 41 CTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGGA CTGCACAGGATGGAGGCGTCCTGCCTACAGCTGGCGCTGGA < 41bp 1 0.461696078336466 1 0.109604388475418 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228916 chr9:139228923 nonsynonymous SNV 0.853 2 28 hm5C_associated_SNPs_24537 0 0 1 0 1 Cytosol 1 0.500230954882882 1 0.999538090234237 hm5C_site_25267 DeepMRMD:1;iRNA_m5C:0.999538090234237 25268 chr5 145858117 145858117 1 + A G KIRC 145858103 + 145858083 145858123 41 GGTCTTCTTTTATAATCCCACCACTCGTCTTTCTATGTGGG GGTCTTCTTTTATAATCCCACCACTCGTCTTTCTGTGTGGG < 41bp 1 0.0785328615178042 1 0.0871165096759796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145858103 chr5:145858117 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_24538 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25268 DeepMRMD:1;iRNA_m5C:0.999536712157815 25269 chr12 73012774 73012774 1 + C A KIRC 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCCGAGCTCTTTATCCTATAGATAAATTACTGGAC < 41bp 1 0.0807869641149957 1 0.196199715137482 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012774 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_24539 0 0 0 0 1 exosome 1 0.500231643816849 1 0.999536712366303 hm5C_site_25269 DeepMRMD:1;iRNA_m5C:0.999536712366303 25270 chr7 142460778 142460778 1 + T C KIRC 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGC < 41bp 1 0.522141847890288 1 0.417205214500427 experiment 0.955716304219424 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460778 synonymous SNV . 0 41 hm5C_associated_SNPs_24540 0 0 0 0 0 Cytosol 1 0.50023164392109 1 0.999536712157819 hm5C_site_25270 DeepMRMD:1;iRNA_m5C:0.999536712157819 25271 chr7 142460778 142460778 1 + T C KIRC 142460769 + 142460749 142460789 41 GGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC GGACAGCTCCAAGGAGTTGTCTCCTGGGGCGATGGCTGTGC < 41bp 1 0.666355105385098 1 0.859666347503662 experiment 0.667289789229804 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460769 chr7:142460778 synonymous SNV . 0 30 hm5C_associated_SNPs_24541 0 0 0 0 0 Cytosol 1 0.500231643921092 0.280667304992676 0.999536712157815 hm5C_site_25271 DeepMRMD:0.280667304992676;iRNA_m5C:0.999536712157815 25272 chr7 142460778 142460778 1 + T C KIRC 142460771 + 142460751 142460791 41 ACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC ACAGCTCCAAGGAGTTGTCTCCTGGGGCGATGGCTGTGCCC < 41bp 1 0.378239057240145 1 0.822995066642761 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460771 chr7:142460778 synonymous SNV . 0 28 hm5C_associated_SNPs_24542 0 0 0 0 0 Cytosol 1 0.500231611394281 0.354009866714478 0.999536777211437 hm5C_site_25272 DeepMRMD:0.354009866714478;iRNA_m5C:0.999536777211437 25273 chr7 142460778 142460778 1 + T C KIRC 142460784 + 142460764 142460804 41 GTTGTCTCCTGGGGTGATGGCTGTGCCCAGAAGAACAAGCC GTTGTCTCCTGGGGCGATGGCTGTGCCCAGAAGAACAAGCC < 41bp 1 0.387685205723006 1 0.353939980268478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460784 chr7:142460778 synonymous SNV . 0 15 hm5C_associated_SNPs_24544 0 0 0 0 0 Cytosol 1 0.500231643921079 1 0.999536712157842 hm5C_site_25273 DeepMRMD:1;iRNA_m5C:0.999536712157842 25274 chr12 95694240 95694240 1 + C T KIRC 95694232 + 95694212 95694252 41 AGCAGATGGAAGTGGTCTGACCACTGCCCCTCCAACTCCCA AGCAGATGGAAGTGGTCTGACCACTGCCTCTCCAACTCCCA < 41bp 1 0.352194784696781 1 0.208152651786804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95694232 chr12:95694240 nonsynonymous SNV 0.056 0 29 hm5C_associated_SNPs_24545 0 0 1 0 0 Endoplasmic reticulum 1 0.500231654344792 1 0.999536691310415 hm5C_site_25274 DeepMRMD:1;iRNA_m5C:0.999536691310415 25275 chr2 128185973 128185973 1 + C A KIRC 128185991 + 128185971 128186011 41 GACCTGGACATCAAGGAGGTCTTCGTCCACCCCAACTACAG GAACTGGACATCAAGGAGGTCTTCGTCCACCCCAACTACAG < 41bp 1 0.242039918619063 1 0.059495747089386 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128185991 chr2:128185973 nonsynonymous SNV 0.462 2 3 hm5C_associated_SNPs_24546 0 0 1 0 1 nucleus 1 0.500231610466836 1 0.999536779066327 hm5C_site_25275 DeepMRMD:1;iRNA_m5C:0.999536779066327 25276 chr7 44796728 44796728 1 + G A KIRC 44796719 + 44796699 44796739 41 GGCGTGTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTT GGCGTGTACAGCCGCGGGGGCTACCCTGGAGCCCCCGGCTT < 41bp 1 0.292002233641454 1 0.0974686741828918 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796719 chr7:44796728 synonymous SNV . 0 30 hm5C_associated_SNPs_24547 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25276 DeepMRMD:1;iRNA_m5C:0.999536712157815 25277 chr13 113485756 113485756 1 + G A KIRC 113485767 + 113485747 113485787 41 AGGAGTGCTGCATCGAAGGCCATGTCTACGTGCCCCACGTC AGGAGTGCTACATCGAAGGCCATGTCTACGTGCCCCACGTC < 41bp 1 0.117192112912682 1 0.475701898336411 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113485767 chr13:113485756 nonsynonymous SNV 0.998 3 10 hm5C_associated_SNPs_24548 0 0 0 0 1 Endoplasmic reticulum 1 0.500216557270983 1 0.999566885458034 hm5C_site_25277 DeepMRMD:1;iRNA_m5C:0.999566885458034 25278 chr19 35829090 35829090 1 + G A KIRC 35829100 + 35829080 35829120 41 AACCTTCCACGGTTCAGATCCTCCACTCACCGGCTGTGGAG AACCTTCCACAGTTCAGATCCTCCACTCACCGGCTGTGGAG < 41bp 1 0.682963152487836 1 0.842442870140076 experiment 0.634073695024329 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD22 ENSG00000012124 CDS Human protein_coding chr19:35829100 chr19:35829090 synonymous SNV . 0 11 hm5C_associated_SNPs_24549 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921096 0.315114259719848 0.999536712157807 hm5C_site_25278 DeepMRMD:0.315114259719848;iRNA_m5C:0.999536712157807 25279 chr17 41154776 41154776 1 + A G KIRC 41154768 + 41154748 41154788 41 CCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA CCTGCTCTTAAACGCAAGGCCCGACGGGGGGCCAAGGTCAA < 41bp 1 0.273332075225015 1 0.306369721889496 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154768 chr17:41154776 nonsynonymous SNV 0.964 1 29 hm5C_associated_SNPs_24550 0 0 1 0 2 Cytosol 1 0.500231643927279 1 0.999536712145442 hm5C_site_25279 DeepMRMD:1;iRNA_m5C:0.999536712145442 25280 chr17 41154776 41154776 1 + A G KIRC 41154779 + 41154759 41154799 41 ACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGA ACGCAAGGCCCGACGGGGGGCCAAGGTCAAGTTTGAAGAGA < 41bp 1 0.393923432925941 1 0.375125110149384 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154779 chr17:41154776 nonsynonymous SNV 0.964 1 18 hm5C_associated_SNPs_24551 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25280 DeepMRMD:1;iRNA_m5C:0.999536712157815 25281 chrX 7171308 7171308 1 + A G KIRC 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAGCATCATCCTGGTGATGGCTGACGA < 41bp 1 0.246227485573662 1 0.0750560760498047 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171308 nonsynonymous SNV 0.167 5 17 hm5C_associated_SNPs_24552 0 0 1 2 1 Cytosol 1 0.500231643177193 1 0.999536713645615 hm5C_site_25281 DeepMRMD:1;iRNA_m5C:0.999536713645615 25282 chr7 142458523 142458523 1 + T A KIRC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAA < 41bp 1 0.358091343949067 1 0.718704700469971 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458523 nonsynonymous SNV 0.016 5 41 hm5C_associated_SNPs_24553 0 0 0 0 2 Cytosol 1 0.500231643921092 0.562590599060058 0.999536712157815 hm5C_site_25282 DeepMRMD:0.562590599060058;iRNA_m5C:0.999536712157815 25283 chr7 142458523 142458523 1 + T A KIRC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAACAA < 41bp 1 0.647981246457102 1 0.28491622209549 experiment 0.704037507085797 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458523 nonsynonymous SNV 0.016 5 38 hm5C_associated_SNPs_24554 0 0 0 0 2 Cytosol 1 0.500231643921011 1 0.999536712157978 hm5C_site_25283 DeepMRMD:1;iRNA_m5C:0.999536712157978 25284 chr7 142458523 142458523 1 + T A KIRC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTCAACAACGAACAGTG < 41bp 1 0.284848707757664 1 0.212536066770554 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458523 nonsynonymous SNV 0.016 5 29 hm5C_associated_SNPs_24555 0 0 0 0 2 Cytosol 1 0.500231657693421 1 0.999536684613159 hm5C_site_25284 DeepMRMD:1;iRNA_m5C:0.999536684613159 25285 chr7 142458523 142458523 1 + T A KIRC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCAACAACGAACAGTGGG < 41bp 1 0.0742810308604587 1 0.0609580874443054 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458523 nonsynonymous SNV 0.016 5 27 hm5C_associated_SNPs_24556 0 0 0 0 2 Cytosol 1 0.500191226318713 1 0.999617547362573 hm5C_site_25285 DeepMRMD:1;iRNA_m5C:0.999617547362573 25286 chr7 142458523 142458523 1 + T A KIRC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCAACAACGAACAGTGGGT < 41bp 1 0.130608772664167 1 0.0727872550487518 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458523 nonsynonymous SNV 0.016 5 26 hm5C_associated_SNPs_24557 0 0 0 0 2 Cytosol 1 0.500096459415361 1 0.999807081169277 hm5C_site_25286 DeepMRMD:1;iRNA_m5C:0.999807081169277 25287 chr7 142458523 142458523 1 + T A KIRC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCAACAACGAACAGTGGGTGGT < 41bp 1 0.690125852444712 1 0.870777010917664 experiment 0.619748295110575 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458523 nonsynonymous SNV 0.016 5 23 hm5C_associated_SNPs_24559 0 0 0 0 2 Cytosol 1 0.500231575288983 0.258445978164672 0.999536849422034 hm5C_site_25287 DeepMRMD:0.258445978164672;iRNA_m5C:0.999536849422034 25288 chr7 142458523 142458523 1 + T A KIRC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCAACAACGAACAGTGGGTGGTATC < 41bp 1 0.654944985572181 1 0.409260511398315 experiment 0.690110028855637 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458523 nonsynonymous SNV 0.016 5 20 hm5C_associated_SNPs_24560 0 0 0 0 2 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_25288 DeepMRMD:1;iRNA_m5C:0.999536712157812 25289 chr7 142458523 142458523 1 + T A KIRC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCAACAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.389893106177349 1 0.413063168525696 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458523 nonsynonymous SNV 0.016 5 17 hm5C_associated_SNPs_24561 0 0 0 0 2 Cytosol 1 0.500231283472527 1 0.999537433054945 hm5C_site_25289 DeepMRMD:1;iRNA_m5C:0.999537433054945 25290 chr7 142458523 142458523 1 + T A KIRC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCAACAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.465500568824539 1 0.604825079441071 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458523 nonsynonymous SNV 0.016 5 13 hm5C_associated_SNPs_24562 0 0 0 0 2 Cytosol 1 0.500231643921092 0.790349841117858 0.999536712157815 hm5C_site_25290 DeepMRMD:0.790349841117858;iRNA_m5C:0.999536712157815 25291 chr17 37360793 37360793 1 + C T KIRC 37360781 + 37360761 37360801 41 TTCTCTTCCCTGACCAGTGACCAGGCTGAGGCCCGCAGGTC TTCTCTTCCCTGACCAGTGACCAGGCTGAGGCTCGCAGGTC < 41bp 1 0.47241880323071 1 0.149629026651382 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360781 chr17:37360793 synonymous SNV . 0 33 hm5C_associated_SNPs_24563 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_25291 DeepMRMD:1;iRNA_m5C:0.999536712157814 25292 chr17 37360793 37360793 1 + C T KIRC 37360801 + 37360781 37360821 41 CCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCA CCAGGCTGAGGCTCGCAGGTCTAAGACCAAGGAAGCACGCA < 41bp 1 0.477116191748092 1 0.295085310935974 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360801 chr17:37360793 synonymous SNV . 0 13 hm5C_associated_SNPs_24565 0 0 1 0 1 chromatin 1 0.50023160593629 1 0.99953678812742 hm5C_site_25292 DeepMRMD:1;iRNA_m5C:0.99953678812742 25293 chr17 37360793 37360793 1 + C T KIRC 37360807 + 37360787 37360827 41 TGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCC TGAGGCTCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCC < 41bp 1 0.507619541857937 1 0.497065484523773 experiment 0.984760916284125 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360807 chr17:37360793 synonymous SNV . 0 7 hm5C_associated_SNPs_24566 0 0 1 0 1 chromatin 1 0.500231906321634 1 0.999536187356731 hm5C_site_25293 DeepMRMD:1;iRNA_m5C:0.999536187356731 25294 chr17 37360846 37360846 1 + C T KIRC 37360862 + 37360842 37360882 41 CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA CAGGTCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA < 41bp 1 0.490614257770311 1 0.122806131839752 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360862 chr17:37360846 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_24568 0 0 1 0 1 chromatin 1 0.500231643858379 1 0.999536712283242 hm5C_site_25294 DeepMRMD:1;iRNA_m5C:0.999536712283242 25295 chr7 130021569 130021569 1 + C T KIRC 130021554 + 130021534 130021574 41 AGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCACGGCAT AGCATCCAGGCGGTCAAGATCTTTCTGGAGTCCCATGGCAT < 41bp 1 0.12168264218957 1 0.0412469208240509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021554 chr7:130021569 synonymous SNV . 0 36 hm5C_associated_SNPs_24569 0 0 0 0 2 Endoplasmic reticulum 1 0.500231612593249 1 0.999536774813502 hm5C_site_25295 DeepMRMD:1;iRNA_m5C:0.999536774813502 25296 chr7 130021569 130021569 1 + C T KIRC 130021565 + 130021545 130021585 41 GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGA GGTCAAGATCTTTCTGGAGTCCCATGGCATCAGCTATGAGA < 41bp 1 0.235599382760067 1 0.132916808128357 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021565 chr7:130021569 synonymous SNV . 0 25 hm5C_associated_SNPs_24570 0 0 0 0 2 Endoplasmic reticulum 1 0.500231646241303 1 0.999536707517394 hm5C_site_25296 DeepMRMD:1;iRNA_m5C:0.999536707517394 25297 chr7 130021569 130021569 1 + C T KIRC 130021566 + 130021546 130021586 41 GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGAC GTCAAGATCTTTCTGGAGTCCCATGGCATCAGCTATGAGAC < 41bp 1 0.193946390813198 1 0.504875481128693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021566 chr7:130021569 synonymous SNV . 0 24 hm5C_associated_SNPs_24571 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643927453 0.990249037742614 0.999536712145093 hm5C_site_25297 DeepMRMD:0.990249037742614;iRNA_m5C:0.999536712145093 25298 chr7 130021569 130021569 1 + C T KIRC 130021567 + 130021547 130021587 41 TCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACC TCAAGATCTTTCTGGAGTCCCATGGCATCAGCTATGAGACC < 41bp 1 0.468904190824149 1 0.526744425296783 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021567 chr7:130021569 synonymous SNV . 0 23 hm5C_associated_SNPs_24572 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392381 0.946511149406434 0.99953671215238 hm5C_site_25298 DeepMRMD:0.946511149406434;iRNA_m5C:0.99953671215238 25299 chr7 130021569 130021569 1 + C T KIRC 130021572 + 130021552 130021592 41 ATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT ATCTTTCTGGAGTCCCATGGCATCAGCTATGAGACCATGAT < 41bp 1 0.453410167246014 1 0.552306771278381 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021572 chr7:130021569 synonymous SNV . 0 18 hm5C_associated_SNPs_24573 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643882084 0.895386457443238 0.999536712235831 hm5C_site_25299 DeepMRMD:0.895386457443238;iRNA_m5C:0.999536712235831 25300 chr7 130021569 130021569 1 + C T KIRC 130021575 + 130021555 130021595 41 TTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGA TTTCTGGAGTCCCATGGCATCAGCTATGAGACCATGATCGA < 41bp 1 0.677859899275529 1 0.614341139793396 experiment 0.644280201448941 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021575 chr7:130021569 synonymous SNV . 0 15 hm5C_associated_SNPs_24574 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643943625 0.771317720413208 0.99953671211275 hm5C_site_25300 DeepMRMD:0.771317720413208;iRNA_m5C:0.99953671211275 25301 chr7 130021569 130021569 1 + C T KIRC 130021578 + 130021558 130021598 41 CTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGAGGA CTGGAGTCCCATGGCATCAGCTATGAGACCATGATCGAGGA < 41bp 1 0.377913091730865 1 0.105038464069366 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021578 chr7:130021569 synonymous SNV . 0 12 hm5C_associated_SNPs_24575 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157817 hm5C_site_25301 DeepMRMD:1;iRNA_m5C:0.999536712157817 25302 chr7 130021569 130021569 1 + C T KIRC 130021586 + 130021566 130021606 41 CCACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGT CCATGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGT < 41bp 1 0.151257887642458 1 0.0426640212535858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021586 chr7:130021569 synonymous SNV . 0 4 hm5C_associated_SNPs_24576 0 0 0 0 2 Endoplasmic reticulum 1 0.500230900687631 1 0.999538198624738 hm5C_site_25302 DeepMRMD:1;iRNA_m5C:0.999538198624738 25303 chr17 1634217 1634217 1 + A T KIRC 1634199 + 1634179 1634219 41 CGCCCGCCTGTATGGGGAGCCTGTCCTCACCTACCAGTACC CGCCCGCCTGTATGGGGAGCCTGTCCTCACCTACCAGTTCC < 41bp 1 0.113464039536647 1 0.0619980096817017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1634199 chr17:1634217 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_24578 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644001798 1 0.999536711996404 hm5C_site_25303 DeepMRMD:1;iRNA_m5C:0.999536711996404 25304 chr5 145613200 145613200 1 + T C KIRC 145613194 + 145613174 145613214 41 GGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCCAGGCCC GGTCCAGGCCCAGGCCCGGGCCCAGGCCCAGGCCCAGGCCC < 41bp 1 0.608726706110112 1 0.173788547515869 experiment 0.782546587779776 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613194 chr5:145613200 synonymous SNV . 0 27 hm5C_associated_SNPs_24581 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25304 DeepMRMD:1;iRNA_m5C:0.999536712157815 25305 chr5 145613200 145613200 1 + T C KIRC 145613195 + 145613175 145613215 41 GTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCCAGGCCCG GTCCAGGCCCAGGCCCGGGCCCAGGCCCAGGCCCAGGCCCG < 41bp 1 0.592377855209182 1 0.269829273223877 experiment 0.815244289581636 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613195 chr5:145613200 synonymous SNV . 0 26 hm5C_associated_SNPs_24582 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25305 DeepMRMD:1;iRNA_m5C:0.999536712157815 25306 chr5 145613200 145613200 1 + T C KIRC 145613214 + 145613194 145613234 41 CCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGTCCTG CCCAGGCCCAGGCCCAGGCCCGGGCCCAGGTCCAGGTCCTG < 41bp 1 0.691214846832661 1 0.741877257823944 experiment 0.617570306334679 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613214 chr5:145613200 synonymous SNV . 0 7 hm5C_associated_SNPs_24584 0 0 0 0 0 Nucleus 1 0.500231643921092 0.516245484352112 0.999536712157815 hm5C_site_25306 DeepMRMD:0.516245484352112;iRNA_m5C:0.999536712157815 25307 chr8 59059205 59059205 1 + A G KIRC 59059206 + 59059186 59059226 41 TCGGGCTCGGGGCACAAGCACAGCTCCCGCAACTGGCCGCC TCGGGCTCGGGGCACAAGCGCAGCTCCCGCAACTGGCCGCC < 41bp 1 0.607613121543464 1 0.290982663631439 experiment 0.784773756913072 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM110B ENSG00000169122 CDS Human protein_coding chr8:59059206 chr8:59059205 nonsynonymous SNV 0.327 0 20 hm5C_associated_SNPs_24585 0 0 0 0 0 Cytosol 1 0.5002316431777 1 0.9995367136446 hm5C_site_25307 DeepMRMD:1;iRNA_m5C:0.9995367136446 25308 chr11 65827424 65827424 1 + C T KIRC 65827410 + 65827390 65827430 41 CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTGCCAGACT CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTGTCAGACT < 41bp 1 0.172835741656097 1 0.0702197551727295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827410 chr11:65827424 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_24586 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25308 DeepMRMD:1;iRNA_m5C:0.999536712157815 25309 chr7 142459694 142459694 1 + A G KIRC 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCGGCCAAG < 41bp 1 0.535082572416632 1 0.243554711341858 experiment 0.929834855166735 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459694 synonymous SNV . 0 35 hm5C_associated_SNPs_24587 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25309 DeepMRMD:1;iRNA_m5C:0.999536712157815 25310 chr7 142459694 142459694 1 + A G KIRC 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATGAGCAGTTCATCAATGCGGCCAAGATCAT < 41bp 1 0.64708539365638 1 0.0485488772392273 experiment 0.705829212687241 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459694 synonymous SNV . 0 30 hm5C_associated_SNPs_24588 0 0 0 0 1 Cytosol 1 0.500231643924462 1 0.999536712151077 hm5C_site_25310 DeepMRMD:1;iRNA_m5C:0.999536712151077 25311 chr7 142459694 142459694 1 + A G KIRC 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAGCAGTTCATCAATGCGGCCAAGATCATCCG < 41bp 1 0.646961756630177 1 0.40596204996109 experiment 0.706076486739645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459694 synonymous SNV . 0 27 hm5C_associated_SNPs_24589 0 0 0 0 1 Cytosol 1 0.500231643138529 1 0.999536713722943 hm5C_site_25311 DeepMRMD:1;iRNA_m5C:0.999536713722943 25312 chr7 142459694 142459694 1 + A G KIRC 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCGGCCAAGATCATCCGCCACC < 41bp 1 0.585058683933448 1 0.0549094974994659 experiment 0.829882632133104 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459694 synonymous SNV . 0 22 hm5C_associated_SNPs_24590 0 0 0 0 1 Cytosol 1 0.500231643921552 1 0.999536712156895 hm5C_site_25312 DeepMRMD:1;iRNA_m5C:0.999536712156895 25313 chr7 142459694 142459694 1 + A G KIRC 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCGGCCAAGATCATCCGCCACCCCC < 41bp 1 0.324317647139224 1 0.192048579454422 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459694 synonymous SNV . 0 19 hm5C_associated_SNPs_24591 0 0 0 0 1 Cytosol 1 0.500231644992184 1 0.999536710015633 hm5C_site_25313 DeepMRMD:1;iRNA_m5C:0.999536710015633 25314 chr7 142459694 142459694 1 + A G KIRC 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCGGCCAAGATCATCCGCCACCCCCAATACGA < 41bp 1 0.34237773126818 1 0.125001817941666 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459694 synonymous SNV . 0 12 hm5C_associated_SNPs_24592 0 0 0 0 1 Cytosol 1 0.500231643922905 1 0.99953671215419 hm5C_site_25314 DeepMRMD:1;iRNA_m5C:0.99953671215419 25315 chr7 142459694 142459694 1 + A G KIRC 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCGGCCAAGATCATCCGCCACCCCCAATACGACAG < 41bp 1 0.343192948513359 1 0.464854180812836 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459694 synonymous SNV . 0 9 hm5C_associated_SNPs_24593 0 0 0 0 1 Cytosol 1 0.500231643923929 1 0.999536712152143 hm5C_site_25315 DeepMRMD:1;iRNA_m5C:0.999536712152143 25316 chr7 142459694 142459694 1 + A G KIRC 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCGGCCAAGATCATCCGCCACCCCCAATACGACAGGAA < 41bp 1 0.107641799671718 1 0.0878535211086273 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459694 synonymous SNV . 0 6 hm5C_associated_SNPs_24595 0 0 0 0 1 Cytosol 1 0.500231643941974 1 0.999536712116052 hm5C_site_25316 DeepMRMD:1;iRNA_m5C:0.999536712116052 25317 chr7 142459694 142459694 1 + A G KIRC 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCGGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG < 41bp 1 0.200154097769332 1 0.116598963737488 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459694 synonymous SNV . 0 5 hm5C_associated_SNPs_24596 0 0 0 0 1 Cytosol 1 0.500231643933696 1 0.999536712132608 hm5C_site_25317 DeepMRMD:1;iRNA_m5C:0.999536712132608 25318 chr7 142459694 142459694 1 + A G KIRC 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCGGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.147421072556251 1 0.0882872343063354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459694 synonymous SNV . 0 3 hm5C_associated_SNPs_24597 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25318 DeepMRMD:1;iRNA_m5C:0.999536712157815 25319 chr7 142459694 142459694 1 + A G KIRC 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CGGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT < 41bp 1 0.504424130096556 1 0.502333104610443 experiment 0.991151739806888 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459694 synonymous SNV . 0 2 hm5C_associated_SNPs_24598 0 0 0 0 1 Cytosol 1 0.500231643921093 0.995333790779114 0.999536712157814 hm5C_site_25319 DeepMRMD:0.995333790779114;iRNA_m5C:0.999536712157814 25320 chr7 142459694 142459694 1 + A G KIRC 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC GGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC < 41bp 1 0.491807274958439 1 0.197892636060715 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459694 synonymous SNV . 0 1 hm5C_associated_SNPs_24599 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25320 DeepMRMD:1;iRNA_m5C:0.999536712157815 25321 chr17 38610249 38610249 1 + C T KIRC 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCCGCTTCACAGAGCCGCACCTACGAGGACCTCTACATCAT < 41bp 1 0.581919501726288 1 0.162535011768341 experiment 0.836160996547424 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610249 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_24600 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25321 DeepMRMD:1;iRNA_m5C:0.999536712157815 25322 chr8 48874107 48874107 1 + T A KIRC 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATCTCCCTCACAGAGACGTAGAGGCGA < 41bp 1 0.260547590004434 1 0.0882163345813751 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874107 synonymous SNV . 0 24 hm5C_associated_SNPs_24601 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25322 DeepMRMD:1;iRNA_m5C:0.999536712157815 25323 chr9 103002449 103002449 1 + C T KIRC 103002451 + 103002431 103002471 41 CGTGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAA CGTGGTTGATGTCTTGACTTCATATGAAAGCTGCAATATAA < 41bp 1 0.143983986158047 1 0.370405077934265 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103002451 chr9:103002449 synonymous SNV . 0 19 hm5C_associated_SNPs_24602 0 0 1 0 1 chromatin 1 0.500231643918888 1 0.999536712162224 hm5C_site_25323 DeepMRMD:1;iRNA_m5C:0.999536712162224 25324 chr11 66291217 66291217 1 + A C KIRC 66291204 + 66291184 66291224 41 TTCCCTGCCAGGGGAAGAAGCTGTGGACAGTGCAGATGCCC TTCCCTGCCAGGGGAAGAAGCTGTGGACAGTGCCGATGCCC < 41bp 1 0.596940564158898 1 0.715129435062408 experiment 0.806118871682203 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66291204 chr11:66291217 nonsynonymous SNV 0.998 0 34 hm5C_associated_SNPs_24603 0 0 0 0 1 membrane 1 0.500231643921056 0.569741129875184 0.999536712157888 hm5C_site_25324 DeepMRMD:0.569741129875184;iRNA_m5C:0.999536712157888 25325 chr6 52943655 52943655 1 + T C KIRC 52943668 + 52943648 52943688 41 AGATTACTTATACCCGGTCTCCAGATGGTGATGGCGTTGGA AGATTACCTATACCCGGTCTCCAGATGGTGATGGCGTTGGA < 41bp 1 0.577715266168115 1 0.756308615207672 experiment 0.84456946766377 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943668 chr6:52943655 synonymous SNV . 0 8 hm5C_associated_SNPs_24604 0 0 1 0 2 Cytosol 1 0.500231664706215 0.487382769584656 0.99953667058757 hm5C_site_25325 DeepMRMD:0.487382769584656;iRNA_m5C:0.99953667058757 25326 chr5 52221264 52221264 1 + A T KIRC 52221259 + 52221239 52221279 41 CAAAAATACAAAGGACAGTGCCTATAACACCAGGACAATAG CAAAAATACAAAGGACAGTGCCTATTACACCAGGACAATAG < 41bp 1 0.01830936039196 1 0.0781328678131104 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52221259 chr5:52221264 nonsynonymous SNV 0.994 4 26 hm5C_associated_SNPs_24605 0 0 0 0 1 chromatin 1 0.500231637962656 1 0.999536724074689 hm5C_site_25326 DeepMRMD:1;iRNA_m5C:0.999536724074689 25327 chr10 104129688 104129688 1 + G T KIRC 104129695 + 104129675 104129715 41 GTCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCA GTCTAGTGTTCGGTGCCCATCCACTGAAAACCAAGAGGCCA < 41bp 1 0.179458913618639 1 0.546637654304504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129695 chr10:104129688 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_24606 0 0 1 0 2 Nucleus 1 0.500231585583281 0.906724691390992 0.999536828833438 hm5C_site_25327 DeepMRMD:0.906724691390992;iRNA_m5C:0.999536828833438 25328 chr10 104129688 104129688 1 + G T KIRC 104129696 + 104129676 104129716 41 TCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCAA TCTAGTGTTCGGTGCCCATCCACTGAAAACCAAGAGGCCAA < 41bp 1 0.489373625811941 1 0.67913681268692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129696 chr10:104129688 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_24607 0 0 1 0 2 Nucleus 1 0.500231643921098 0.64172637462616 0.999536712157803 hm5C_site_25328 DeepMRMD:0.64172637462616;iRNA_m5C:0.999536712157803 25329 chr12 56863103 56863103 1 + G A KIRC 56863112 + 56863092 56863132 41 GATCGTTCCTGGGTGTTCACCTATGCCCAGCGCAAGTGGTA GATCGTTCCTGAGTGTTCACCTATGCCCAGCGCAAGTGGTA < 41bp 1 0.30213292193864 1 0.0915474593639374 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPRYD4 ENSG00000176422 CDS Human protein_coding chr12:56863112 chr12:56863103 stopgain 1.000 1 12 hm5C_associated_SNPs_24608 0 0 1 0 0 Cytosol 1 0.500231976459293 1 0.999536047081414 hm5C_site_25329 DeepMRMD:1;iRNA_m5C:0.999536047081414 25330 chr1 11333752 11333752 1 + C A KIRC 11333762 + 11333742 11333782 41 GCCCTGAGGCCCTGGAGCTTCAGTGCCTCACTCACACCGGT GCCCTGAGGCACTGGAGCTTCAGTGCCTCACTCACACCGGT < 41bp 1 0.598382830679391 1 0.852461099624634 experiment 0.803234338641219 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBIAD1 ENSG00000120942 CDS Human protein_coding chr1:11333762 chr1:11333752 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_24609 0 0 1 0 0 Endoplasmic reticulum 1 0.50023174604962 0.295077800750732 0.999536507900761 hm5C_site_25330 DeepMRMD:0.295077800750732;iRNA_m5C:0.999536507900761 25331 chr6 144876009 144876009 1 + A T KIRC 144875991 + 144875971 144876011 41 TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCTAA < 41bp 1 0.235226559528031 1 0.371474087238312 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144875991 chr6:144876009 stopgain 0.989 0 39 hm5C_associated_SNPs_24610 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_25331 DeepMRMD:1;iRNA_m5C:0.999536712157815 25332 chr7 142458551 142458551 1 + C T KIRC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGT < 41bp 1 0.436691967822426 1 0.2731853723526 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458551 synonymous SNV . 0 41 hm5C_associated_SNPs_24612 0 0 0 0 2 Cytosol 1 0.500231643921122 1 0.999536712157755 hm5C_site_25332 DeepMRMD:1;iRNA_m5C:0.999536712157755 25333 chr7 142458551 142458551 1 + C T KIRC 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGTGGGTGGTATCAGCAGGTCACTGCTACAAGTCGT < 41bp 1 0.661265445965955 1 0.821524560451508 experiment 0.67746910806809 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458551 synonymous SNV . 0 25 hm5C_associated_SNPs_24613 0 0 0 0 2 Cytosol 1 0.500231644052267 0.356950879096984 0.999536711895466 hm5C_site_25333 DeepMRMD:0.356950879096984;iRNA_m5C:0.999536711895466 25334 chr7 142458551 142458551 1 + C T KIRC 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGTGGGTGGTATCAGCAGGTCACTGCTACAAGTCGTAAGTG < 41bp 1 0.52180330480069 1 0.215376108884811 experiment 0.956393390398619 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458551 synonymous SNV . 0 20 hm5C_associated_SNPs_24614 0 0 0 0 2 Cytosol 1 0.500241248758111 1 0.999517502483779 hm5C_site_25334 DeepMRMD:1;iRNA_m5C:0.999517502483779 25335 chr7 142458551 142458551 1 + C T KIRC 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG TGGGTGGTATCAGCAGGTCACTGCTACAAGTCGTAAGTGTG < 41bp 1 0.36569687994881 1 0.0693067312240601 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458551 synonymous SNV . 0 18 hm5C_associated_SNPs_24615 0 0 0 0 2 Cytosol 1 0.500349917672856 1 0.999300164654287 hm5C_site_25335 DeepMRMD:1;iRNA_m5C:0.999300164654287 25336 chr7 142458551 142458551 1 + C T KIRC 142458557 + 142458537 142458577 41 GTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGG GTGGTATCAGCAGGTCACTGCTACAAGTCGTAAGTGTGGGG < 41bp 1 0.520902720143555 1 0.662981629371643 experiment 0.95819455971289 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458557 chr7:142458551 synonymous SNV . 0 15 hm5C_associated_SNPs_24616 0 0 0 0 2 Cytosol 1 0.500231643921092 0.674036741256714 0.999536712157815 hm5C_site_25336 DeepMRMD:0.674036741256714;iRNA_m5C:0.999536712157815 25337 chr7 142458551 142458551 1 + C T KIRC 142458560 + 142458540 142458580 41 GTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCC GTATCAGCAGGTCACTGCTACAAGTCGTAAGTGTGGGGCCC < 41bp 1 0.51044757570149 1 0.788706123828888 experiment 0.97910484859702 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458560 chr7:142458551 synonymous SNV . 0 12 hm5C_associated_SNPs_24617 0 0 0 0 2 Cytosol 1 0.500232016131774 0.422587752342224 0.999535967736452 hm5C_site_25337 DeepMRMD:0.422587752342224;iRNA_m5C:0.999535967736452 25338 chr7 142459667 142459667 1 + G A KIRC 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGAAGTCCTAGAGGGGAA < 41bp 1 0.684885670504633 1 0.146683484315872 experiment 0.630228658990735 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459667 synonymous SNV . 0 33 hm5C_associated_SNPs_24619 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_25338 DeepMRMD:1;iRNA_m5C:0.999536712157814 25339 chr7 142459667 142459667 1 + G A KIRC 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTAGAGGGGAATGAGCAGTT < 41bp 1 0.320789391124179 1 0.222928076982498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459667 synonymous SNV . 0 24 hm5C_associated_SNPs_24621 0 0 0 0 1 Cytosol 1 0.500231656490532 1 0.999536687018936 hm5C_site_25339 DeepMRMD:1;iRNA_m5C:0.999536687018936 25340 chr7 142459667 142459667 1 + G A KIRC 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTAGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.499683114656593 1 0.297142505645752 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459667 synonymous SNV . 0 8 hm5C_associated_SNPs_24622 0 0 0 0 1 Cytosol 1 0.500231643921108 1 0.999536712157784 hm5C_site_25340 DeepMRMD:1;iRNA_m5C:0.999536712157784 25341 chr7 142459667 142459667 1 + G A KIRC 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTAGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.64469839690225 1 0.0451129674911499 experiment 0.710603206195501 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459667 synonymous SNV . 0 3 hm5C_associated_SNPs_24623 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_25341 DeepMRMD:1;iRNA_m5C:0.999536712157814 25342 chr14 73550237 73550237 1 + A G KIRC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGAGTACAGGGTGCTTCCGGAAAGCTT < 41bp 1 0.682192563830159 1 0.762013792991638 experiment 0.635614872339681 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550237 synonymous SNV . 0 23 hm5C_associated_SNPs_24624 0 0 1 0 2 Nucleus 1 0.500231731554805 0.475972414016724 0.99953653689039 hm5C_site_25342 DeepMRMD:0.475972414016724;iRNA_m5C:0.99953653689039 25343 chrX 107807142 107807142 1 + C A KIRC 107807137 + 107807117 107807157 41 TGATGGAATTCCAGGGCCACCAGGACCAAAAGGAATCAGAG TGATGGAATTCCAGGGCCACCAGGAACAAAAGGAATCAGAG < 41bp 1 0.554610943688621 1 0.643687844276428 experiment 0.890778112622759 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107807137 chrX:107807142 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_24626 0 0 1 0 0 Ribosome 1 0.500231643921092 0.712624311447144 0.999536712157815 hm5C_site_25343 DeepMRMD:0.712624311447144;iRNA_m5C:0.999536712157815 25344 chr13 99098974 99098974 1 + T C KIRC 99098975 + 99098955 99098995 41 CTACTCGCTCACCATCCCCTCTGAGTCCGAGAACATCCAGA CTACTCGCTCACCATCCCCCCTGAGTCCGAGAACATCCAGA < 41bp 1 0.180412235709921 1 0.0391455888748169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098975 chr13:99098974 nonsynonymous SNV 0.958 1 20 hm5C_associated_SNPs_24627 0 0 1 0 2 Cytosol 1 0.500231643921537 1 0.999536712156927 hm5C_site_25344 DeepMRMD:1;iRNA_m5C:0.999536712156927 25345 chr13 99098974 99098974 1 + T C KIRC 99098981 + 99098961 99099001 41 GCTCACCATCCCCTCTGAGTCCGAGAACATCCAGAAAGACT GCTCACCATCCCCCCTGAGTCCGAGAACATCCAGAAAGACT < 41bp 1 0.156948396964846 1 0.459299325942993 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99098981 chr13:99098974 nonsynonymous SNV 0.958 1 14 hm5C_associated_SNPs_24628 0 0 1 0 2 Cytosol 1 0.500231643892344 1 0.999536712215313 hm5C_site_25345 DeepMRMD:1;iRNA_m5C:0.999536712215313 25346 chr16 68071947 68071947 1 + T A KIRC 68071957 + 68071937 68071977 41 ATAGCCTCTCTCTGTGTTACCATAATAAGCTAATCCTGGCC ATAGCCTCTCACTGTGTTACCATAATAAGCTAATCCTGGCC < 41bp 1 0.33732784111106 1 0.174164295196533 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68071957 chr16:68071947 synonymous SNV . 0 11 hm5C_associated_SNPs_24629 0 0 0 0 1 Ribosome 1 0.500231643921064 1 0.999536712157872 hm5C_site_25346 DeepMRMD:1;iRNA_m5C:0.999536712157872 25347 chr19 35501012 35501012 1 + G T KIRC 35501031 + 35501011 35501051 41 TGCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT TTCAGCGTGAGATCCTGCTCCAGGGCCGCCTCTACCTCTCT < 41bp 1 0.690521015420358 1 0.725491523742676 experiment 0.618957969159284 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501031 chr19:35501012 synonymous SNV . 0 2 hm5C_associated_SNPs_24630 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164544131 0.549016952514648 0.999536709117379 hm5C_site_25347 DeepMRMD:0.549016952514648;iRNA_m5C:0.999536709117379 25348 chr19 50753042 50753042 1 + C G KIRC 50753062 + 50753042 50753082 41 CTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT GTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT < 41bp 1 0.252283043625159 1 0.541457712650299 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753062 chr19:50753042 nonsynonymous SNV 0.099 3 1 hm5C_associated_SNPs_24631 0 0 0 0 1 cytosol 1 0.500233988768969 0.917084574699402 0.999532022462062 hm5C_site_25348 DeepMRMD:0.917084574699402;iRNA_m5C:0.999532022462062 25349 chr1 180849261 180849261 1 + T C KIRC 180849252 + 180849232 180849272 41 TCCGCCTGGAGAATGAACATCTGAATAACTGTGGTGAATTC TCCGCCTGGAGAATGAACATCTGAATAACCGTGGTGAATTC < 41bp 1 0.69682199537784 1 0.446247935295105 experiment 0.606356009244321 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XPR1 ENSG00000143324 CDS Human protein_coding chr1:180849252 chr1:180849261 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_24632 0 0 1 0 1 Ribosome 1 0.500231651676266 1 0.999536696647467 hm5C_site_25349 DeepMRMD:1;iRNA_m5C:0.999536696647467 25350 chr5 54456043 54456043 1 + C T KIRC 54456062 + 54456042 54456082 41 CCGCTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT CTGCTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT < 41bp 1 0.482128155912895 1 0.488584518432617 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPX8 ENSG00000164294 CDS Human protein_coding chr5:54456062 chr5:54456043 nonsynonymous SNV 0.987 4 2 hm5C_associated_SNPs_24633 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_25350 DeepMRMD:1;iRNA_m5C:0.999536712157815 25351 chr11 71502830 71502830 1 + T A KIRC 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGAAT < 41bp 1 0.172693274982518 1 0.454272359609604 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502830 nonsynonymous SNV 0.849 2 39 hm5C_associated_SNPs_24634 0 0 0 0 3 Ribosome 1 0.500231876378973 1 0.999536247242053 hm5C_site_25351 DeepMRMD:1;iRNA_m5C:0.999536247242053 25352 chr6 29911945 29911945 1 + G A KIRC 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAAGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC < 41bp 1 0.687584285586072 1 0.296805739402771 experiment 0.624831428827856 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911945 synonymous SNV . 0 6 hm5C_associated_SNPs_24635 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_25352 DeepMRMD:1;iRNA_m5C:0.999536712157816 25353 chr22 29695794 29695794 1 + G A KIRC 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAAATGGGAG < 41bp 1 0.392844523390184 1 0.189939498901367 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695794 synonymous SNV . 0 34 hm5C_associated_SNPs_24636 0 0 1 0 1 Cytosol 1 0.500231643920992 1 0.999536712158017 hm5C_site_25353 DeepMRMD:1;iRNA_m5C:0.999536712158017 25354 chr1 171759689 171759689 1 + G T KIRC 171759671 + 171759651 171759691 41 CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTGTG CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTTTG < 41bp 1 0.327125099567261 1 0.0300736427307129 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759671 chr1:171759689 synonymous SNV . 0 39 hm5C_associated_SNPs_24637 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_25354 DeepMRMD:1;iRNA_m5C:0.999536712157816 25355 chr7 142458509 142458509 1 + T C KIRC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGCTACCACTTCTGCGGTGGCTC < 41bp 1 0.0695710083278127 1 0.0164762735366821 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458509 synonymous SNV . 0 33 hm5C_associated_SNPs_24638 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25355 DeepMRMD:1;iRNA_m5C:0.999536712157815 25356 chr7 142458509 142458509 1 + T C KIRC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCACTTCTGCGGTGGCTCCCT < 41bp 1 0.0825753594150823 1 0.166979759931564 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458509 synonymous SNV . 0 30 hm5C_associated_SNPs_24639 0 0 0 0 2 Cytosol 1 0.500231643923746 1 0.999536712152508 hm5C_site_25356 DeepMRMD:1;iRNA_m5C:0.999536712152508 25357 chr7 142458509 142458509 1 + T C KIRC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGCGGTGGCTCCCTC < 41bp 1 0.213082541163866 1 0.414930254220963 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458509 synonymous SNV . 0 29 hm5C_associated_SNPs_24640 0 0 0 0 2 Cytosol 1 0.50023164391939 1 0.999536712161221 hm5C_site_25357 DeepMRMD:1;iRNA_m5C:0.999536712161221 25358 chr7 142458509 142458509 1 + T C KIRC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGCGGTGGCTCCCTCAT < 41bp 1 0.263182832731453 1 0.547744035720825 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458509 synonymous SNV . 0 27 hm5C_associated_SNPs_24641 0 0 0 0 2 Cytosol 1 0.500231643921094 0.90451192855835 0.999536712157812 hm5C_site_25358 DeepMRMD:0.90451192855835;iRNA_m5C:0.999536712157812 25359 chr7 142458509 142458509 1 + T C KIRC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGCGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.280673915626934 1 0.114153772592545 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458509 synonymous SNV . 0 15 hm5C_associated_SNPs_24642 0 0 0 0 2 Cytosol 1 0.50022999167553 1 0.99954001664894 hm5C_site_25359 DeepMRMD:1;iRNA_m5C:0.99954001664894 25360 chr7 142458509 142458509 1 + T C KIRC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGCGGTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0877145165511597 1 0.0637551248073578 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458509 synonymous SNV . 0 13 hm5C_associated_SNPs_24643 0 0 0 0 2 Cytosol 1 0.500231640151217 1 0.999536719697566 hm5C_site_25360 DeepMRMD:1;iRNA_m5C:0.999536719697566 25361 chr7 142458509 142458509 1 + T C KIRC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGCGGTGGCTCCCTCATCAACGAACAGTGGGT < 41bp 1 0.171183897969413 1 0.0575220882892609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458509 synonymous SNV . 0 12 hm5C_associated_SNPs_24644 0 0 0 0 2 Cytosol 1 0.500199598508281 1 0.999600802983439 hm5C_site_25361 DeepMRMD:1;iRNA_m5C:0.999600802983439 25362 chr7 142458509 142458509 1 + T C KIRC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGCGGTGGCTCCCTCATCAACGAACAGTGGGTG < 41bp 1 0.386208774786684 1 0.25637075304985 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458509 synonymous SNV . 0 11 hm5C_associated_SNPs_24645 0 0 0 0 2 Cytosol 1 0.500231611002157 1 0.999536777995685 hm5C_site_25362 DeepMRMD:1;iRNA_m5C:0.999536777995685 25363 chr7 142458509 142458509 1 + T C KIRC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGCGGTGGCTCCCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.475478513815991 1 0.693053364753723 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458509 synonymous SNV . 0 9 hm5C_associated_SNPs_24646 0 0 0 0 2 Cytosol 1 0.50023164428856 0.613893270492554 0.999536711422879 hm5C_site_25363 DeepMRMD:0.613893270492554;iRNA_m5C:0.999536711422879 25364 chr7 142458509 142458509 1 + T C KIRC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGCGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC < 41bp 1 0.694214089390978 1 0.578979074954987 experiment 0.611571821218043 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458509 synonymous SNV . 0 6 hm5C_associated_SNPs_24647 0 0 0 0 2 Cytosol 1 0.500231643921092 0.842041850090026 0.999536712157815 hm5C_site_25364 DeepMRMD:0.842041850090026;iRNA_m5C:0.999536712157815 25365 chr7 142458509 142458509 1 + T C KIRC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGCGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.367306811365878 1 0.357348620891571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458509 synonymous SNV . 0 3 hm5C_associated_SNPs_24648 0 0 0 0 2 Cytosol 1 0.500231642802103 1 0.999536714395794 hm5C_site_25365 DeepMRMD:1;iRNA_m5C:0.999536714395794 25366 chr5 176084597 176084597 1 + G A KIRC 176084617 + 176084597 176084637 41 GCAGAACTCTCTGACTGGGGCCCCTGGCCCGGCCCCACCCA ACAGAACTCTCTGACTGGGGCCCCTGGCCCGGCCCCACCCA < 41bp 1 0.388173362129912 1 0.0933266282081604 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176084617 chr5:176084597 synonymous SNV . 0 1 hm5C_associated_SNPs_24649 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_25366 DeepMRMD:1;iRNA_m5C:0.999536712157815 25367 chr20 44050027 44050027 1 + C T KIRC 44050042 + 44050022 44050062 41 GAGGCCCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACGT GAGGCTCCCCCAGTGCCCTTCCTGCATGCCCAGCGGTACGT < 41bp 1 0.1267752047336 1 0.0927641093730927 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44050042 chr20:44050027 synonymous SNV . 0 6 hm5C_associated_SNPs_24650 0 0 1 0 1 Ribosome 1 0.500231643857918 1 0.999536712284165 hm5C_site_25367 DeepMRMD:1;iRNA_m5C:0.999536712284165 25368 chr2 27663740 27663740 1 + C T KIRC 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGATATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.2351258689689 1 0.0165746212005615 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663740 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_24651 0 0 1 0 2 Cytosol 1 0.500231624158056 1 0.999536751683887 hm5C_site_25368 DeepMRMD:1;iRNA_m5C:0.999536751683887 25369 chr1 183891413 183891413 1 + C T KIRC 183891401 + 183891381 183891421 41 CTGTGATCCAGAGAGCCATGCTGAAGCACAATCTGGACTCA CTGTGATCCAGAGAGCCATGCTGAAGCACAATTTGGACTCA < 41bp 1 0.694836706076283 1 0.560725390911102 experiment 0.610326587847434 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RGL1 ENSG00000143344 CDS Human protein_coding chr1:183891401 chr1:183891413 synonymous SNV . 0 33 hm5C_associated_SNPs_24652 0 0 0 0 2 cytosol 1 0.500231644604364 0.878549218177796 0.999536710791272 hm5C_site_25369 DeepMRMD:0.878549218177796;iRNA_m5C:0.999536710791272 25370 chr12 82796821 82796821 1 + A G KIRC 82796830 + 82796810 82796850 41 ACTTTGCGAATATTTACCTCCAACTCTGAAATCAAGGGAGT ACTTTGCGAATGTTTACCTCCAACTCTGAAATCAAGGGAGT < 41bp 1 0.303464963679887 1 0.157296746969223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL25 ENSG00000127720 CDS Human protein_coding chr12:82796830 chr12:82796821 nonsynonymous SNV 0.979 0 12 hm5C_associated_SNPs_24653 0 0 0 0 2 cytosol 1 0.5002316439211 1 0.999536712157801 hm5C_site_25370 DeepMRMD:1;iRNA_m5C:0.999536712157801 25371 chr11 12243299 12243299 1 + G A KIRC 12243280 + 12243260 12243300 41 AAGAGCTGGAACCAGGGCACCCCTCCCCTGGAGCTGCTGGC AAGAGCTGGAACCAGGGCACCCCTCCCCTGGAGCTGCTGAC < 41bp 1 0.0377378424401761 1 0.123589396476746 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12243280 chr11:12243299 nonsynonymous SNV 0.962 4 40 hm5C_associated_SNPs_24654 0 0 1 0 1 Ribosome 1 0.500231644076569 1 0.999536711846861 hm5C_site_25371 DeepMRMD:1;iRNA_m5C:0.999536711846861 25372 chr1 145581235 145581235 1 + C T KIRC 145581253 + 145581233 145581273 41 TCCGGGTGTCACTCATGTGCCCGGTGGGTAAAAGGGGAGAA TCTGGGTGTCACTCATGTGCCCGGTGGGTAAAAGGGGAGAA < 41bp 1 0.174388170751061 1 0.273174673318863 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIAS3 ENSG00000131788 CDS Human protein_coding chr1:145581253 chr1:145581235 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_24655 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_25372 DeepMRMD:1;iRNA_m5C:0.999536712157815 25373 chr20 62366744 62366744 1 + G A KIRC 62366763 + 62366743 62366783 41 GGCCCTAGAAGCCGGGGCGGCCCCAGCGGGGAGGAGGAGCA GACCCTAGAAGCCGGGGCGGCCCCAGCGGGGAGGAGGAGCA < 41bp 1 0.398165786161075 1 0.767495036125183 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62366763 chr20:62366744 nonsynonymous SNV 0.015 0 2 hm5C_associated_SNPs_24657 0 0 1 0 0 chromatin 1 0.500231643921092 0.465009927749634 0.999536712157815 hm5C_site_25373 DeepMRMD:0.465009927749634;iRNA_m5C:0.999536712157815 25374 chr8 22037969 22037969 1 + G A KIRC 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGACGC < 41bp 1 0.385044750930085 1 0.124210387468338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037969 stopgain 0.991 0 38 hm5C_associated_SNPs_24658 0 0 1 1 2 Endoplasmic reticulum 1 0.50023153959077 1 0.99953692081846 hm5C_site_25374 DeepMRMD:1;iRNA_m5C:0.99953692081846 25375 chr10 118318744 118318744 1 + G T KIRC 118318729 + 118318709 118318749 41 GTCACTATGCTGATAGATATCCTGGGAAAACAAATGATGTG GTCACTATGCTGATAGATATCCTGGGAAAACAAATTATGTG < 41bp 1 0.54642238279834 1 0.507858097553253 experiment 0.90715523440332 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318729 chr10:118318744 nonsynonymous SNV 0.000 2 36 hm5C_associated_SNPs_24659 0 0 0 0 2 unknown 1 0.500231641640228 0.984283804893494 0.999536716719544 hm5C_site_25375 DeepMRMD:0.984283804893494;iRNA_m5C:0.999536716719544 25376 chr11 61897770 61897770 1 + C A KIRC 61897785 + 61897765 61897805 41 AAGCTCAGGATTGCGCAGGTCTCCCCTGGCCCACGGGACTC AAGCTAAGGATTGCGCAGGTCTCCCCTGGCCCACGGGACTC < 41bp 1 0.437418701557871 1 0.225680261850357 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897785 chr11:61897770 synonymous SNV . 0 6 hm5C_associated_SNPs_24660 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_25376 DeepMRMD:1;iRNA_m5C:0.999536712157815 25377 chr1 228459673 228459673 1 + C T KIRC 228459666 + 228459646 228459686 41 AAGGAGCAGGTGGTGTTTGCCAAGGATCAGCCGGTGCACAG AAGGAGCAGGTGGTGTTTGCCAAGGATTAGCCGGTGCACAG < 41bp 1 0.245162421190846 1 0.917844235897064 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228459666 chr1:228459673 stopgain 0.015 0 28 hm5C_associated_SNPs_24661 0 0 1 0 1 Ribosome 1 0.500231666691155 0.164311528205872 0.99953666661769 hm5C_site_25377 DeepMRMD:0.164311528205872;iRNA_m5C:0.99953666661769 25378 chr16 90001521 90001521 1 + C T KIRC 90001517 + 90001497 90001537 41 GCACCCTCAAGCTGGCCACGCCCACCTACGGGGACCTCAAC GCACCCTCAAGCTGGCCACGCCCATCTACGGGGACCTCAAC < 41bp 1 0.104166693408501 1 0.0625204145908356 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TUBB3 ENSG00000198211;ENSG00000258947 CDS Human other chr16:90001517 chr16:90001521 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_24662 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_25378 DeepMRMD:1;iRNA_m5C:0.999536712157815 25379 chrX 107868987 107868987 1 + T G KIRC 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCGGGACTT < 41bp 1 0.173397376282864 1 0.0293625891208649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868987 synonymous SNV . 0 35 hm5C_associated_SNPs_24663 0 0 0 0 2 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_25379 DeepMRMD:1;iRNA_m5C:0.999536712157808 25380 chr16 700616 700616 1 + C G KIRC 700606 + 700586 700626 41 CTCGATCTGCAGGACGTTCTCCTGGTCTACCTGAACCGGTG CTCGATCTGCAGGACGTTCTCCTGGTCTACGTGAACCGGTG < 41bp 1 0.472448593050575 1 0.753773212432861 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:700606 chr16:700616 nonsynonymous SNV 0.127 1 31 hm5C_associated_SNPs_24664 0 0 0 0 2 Cytosol 1 0.500231643921091 0.492453575134278 0.999536712157818 hm5C_site_25380 DeepMRMD:0.492453575134278;iRNA_m5C:0.999536712157818 25381 chr4 980873 980873 1 + A G KIRC 980893 + 980873 980913 41 ATGCGTCCCCTGCGCCCCCGCGCCGCGCTGCTGGCGCTCCT GTGCGTCCCCTGCGCCCCCGCGCCGCGCTGCTGGCGCTCCT < 41bp 1 0.694554762889317 1 0.894270539283752 experiment 0.610890474221366 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control IDUA ENSG00000127415 CDS Human protein_coding chr4:980893 chr4:980873 nonsynonymous SNV 0.011 2 1 hm5C_associated_SNPs_24665 0 0 1 0 0 chromatin 1 0.500231643920655 0.211458921432496 0.99953671215869 hm5C_site_25381 DeepMRMD:0.211458921432496;iRNA_m5C:0.99953671215869 25382 chr6 117037431 117037431 1 + G A KIRC 117037411 + 117037391 117037431 41 AAATTCAAACAGACTCACAACAACAAGAAATGCCGTGTGGG AAATTCAAACAGACTCACAACAACAAGAAATGCCGTGTGGA < 41bp 1 0.549242728144356 1 0.416763424873352 experiment 0.901514543711287 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117037411 chr6:117037431 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_24668 0 0 1 0 2 chromatin 1 0.500362830351761 1 0.999274339296478 hm5C_site_25382 DeepMRMD:1;iRNA_m5C:0.999274339296478 25383 chr19 34959981 34959981 1 + A C KIRC 34959978 + 34959958 34959998 41 TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA TGACGTTCTCATAGTTGATTCAGCTGAAGAAGATTCTTCAA < 41bp 1 0.532812400694078 1 0.293211877346039 experiment 0.934375198611844 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34959978 chr19:34959981 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_24669 0 0 1 0 1 Cytosol 1 0.50023164387574 1 0.99953671224852 hm5C_site_25383 DeepMRMD:1;iRNA_m5C:0.99953671224852 25384 chr15 40866065 40866065 1 + C G KIRC 40866080 + 40866060 40866100 41 GGGACCTGGTAGCAGAGCACCAGGCCAAACAGAGCCTGGAT GGGACGTGGTAGCAGAGCACCAGGCCAAACAGAGCCTGGAT < 41bp 1 0.444493989912428 1 0.88140594959259 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40866080 chr15:40866065 nonsynonymous SNV 0.872 4 6 hm5C_associated_SNPs_24670 0 0 1 0 0 Cytosol 1 0.500232167903272 0.23718810081482 0.999535664193455 hm5C_site_25384 DeepMRMD:0.23718810081482;iRNA_m5C:0.999535664193455 25385 chr20 37632409 37632409 1 + T A KIRC 37632421 + 37632401 37632441 41 GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACT GAAACTGTAGTGTCGATGCTCATCGAGCAGGCTCGAGCACT < 41bp 1 0.329288676467224 1 0.0361090898513794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632421 chr20:37632409 synonymous SNV . 0 9 hm5C_associated_SNPs_24671 0 0 1 0 1 Endoplasmic reticulum 1 0.50017808121501 1 0.99964383756998 hm5C_site_25385 DeepMRMD:1;iRNA_m5C:0.99964383756998 25386 chr17 71232490 71232490 1 + T G KIRC 71232491 + 71232471 71232511 41 ATGAGCTCATTAGGTAAAATCCAAGTCATGGAGAAACAAGA ATGAGCTCATTAGGTAAAAGCCAAGTCATGGAGAAACAAGA < 41bp 1 0.137624282162017 1 0.143935918807983 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71232491 chr17:71232490 nonsynonymous SNV 0.014 0 20 hm5C_associated_SNPs_24672 0 0 1 0 0 chromatin 1 0.500231644006234 1 0.999536711987532 hm5C_site_25386 DeepMRMD:1;iRNA_m5C:0.999536711987532 25387 chr16 19548885 19548885 1 + A G KIRC 19548865 + 19548845 19548885 41 AAAAAGATACCCTAAGGGATCTGGCTTCGTTAACAAGAATA AAAAAGATACCCTAAGGGATCTGGCTTCGTTAACAAGAATG < 41bp 1 0.41444847765882 1 0.259268641471863 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCP110 ENSG00000103540 CDS Human protein_coding chr16:19548865 chr16:19548885 nonsynonymous SNV 0.991 0 41 hm5C_associated_SNPs_24673 0 0 1 0 1 Cytosol 1 0.500231643921109 1 0.999536712157781 hm5C_site_25387 DeepMRMD:1;iRNA_m5C:0.999536712157781 25388 chr14 39645318 39645318 1 + T C KIRC 39645306 + 39645286 39645326 41 ATCCAAGCCAGATTGCTGGCCCTTTCTGGTCCTGGTGGAGG ATCCAAGCCAGATTGCTGGCCCTTTCTGGTCCCGGTGGAGG < 41bp 1 0.0239480909394246 1 0.0192565321922302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39645306 chr14:39645318 synonymous SNV . 0 33 hm5C_associated_SNPs_24674 0 0 1 0 2 Nucleus 1 0.500231643921147 1 0.999536712157706 hm5C_site_25388 DeepMRMD:1;iRNA_m5C:0.999536712157706 25389 chr9 134354737 134354737 1 + T G KIRC 134354717 + 134354697 134354737 41 AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCT AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCG < 41bp 1 0.367558775675558 1 0.812266707420349 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354717 chr9:134354737 synonymous SNV . 0 41 hm5C_associated_SNPs_24675 0 0 1 0 1 Nucleus 1 0.500231643921362 0.375466585159302 0.999536712157277 hm5C_site_25389 DeepMRMD:0.375466585159302;iRNA_m5C:0.999536712157277 25390 chr9 134354737 134354737 1 + T G KIRC 134354743 + 134354723 134354763 41 GACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG GACGTGACCGTGCCGGGCAGCAGCCTGGGCACTGAGATCTG < 41bp 1 0.278912999871026 1 0.509276628494263 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354743 chr9:134354737 synonymous SNV . 0 15 hm5C_associated_SNPs_24676 0 0 1 0 1 Nucleus 1 0.500231729685559 0.981446743011474 0.999536540628882 hm5C_site_25390 DeepMRMD:0.981446743011474;iRNA_m5C:0.999536540628882 25391 chr8 28906483 28906483 1 + T A KIRC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCAGGAGAGTCATGGGA < 41bp 1 0.0346286519571393 1 0.198637098073959 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906483 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_24677 0 0 1 0 4 Nucleus 1 0.500231643921056 1 0.999536712157889 hm5C_site_25391 DeepMRMD:1;iRNA_m5C:0.999536712157889 25392 chr8 28906483 28906483 1 + T A KIRC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCAGGAGAGTCATGGGATAGA < 41bp 1 0.430601540845215 1 0.869272470474243 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906483 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_24678 0 0 1 0 4 Nucleus 1 0.50023164392109 0.261455059051514 0.99953671215782 hm5C_site_25392 DeepMRMD:0.261455059051514;iRNA_m5C:0.99953671215782 25393 chr7 128846159 128846159 1 + C T KIRC 128846171 + 128846151 128846191 41 CACCTGCTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC CACCTGCTTACCTGGTCACTCCCCTTTGTCCTCACTGTGGC < 41bp 1 0.240808670381565 1 0.0341092050075531 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128846171 chr7:128846159 synonymous SNV . 0 9 hm5C_associated_SNPs_24679 0 0 0 0 1 cytosol 1 0.50023166534415 1 0.9995366693117 hm5C_site_25393 DeepMRMD:1;iRNA_m5C:0.9995366693117 25394 chr14 102901086 102901086 1 + C T KIRC 102901100 + 102901080 102901120 41 CCCCCTCCTGAACTCACTCACTGTGCCTTCCAGCCTCAGCT CCCCCTTCTGAACTCACTCACTGTGCCTTCCAGCCTCAGCT < 41bp 1 0.133620859577967 1 0.368309080600739 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102901100 chr14:102901086 synonymous SNV . 0 7 hm5C_associated_SNPs_24680 0 0 1 0 0 Cytosol 1 0.500231643921051 1 0.999536712157897 hm5C_site_25394 DeepMRMD:1;iRNA_m5C:0.999536712157897 25395 chr10 98743198 98743198 1 + T G KIRC 98743202 + 98743182 98743222 41 GAGGCTGTGAATGAGGTAGACAACGAAAACACCCAGCAGAA GAGGCTGTGAATGAGGGAGACAACGAAAACACCCAGCAGAA < 41bp 1 0.667070780340145 1 0.496883362531662 experiment 0.66585843931971 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LCOR ENSG00000155640 CDS Human other chr10:98743202 chr10:98743198 nonsynonymous SNV 0.016 0 17 hm5C_associated_SNPs_24681 0 0 1 0 0 Ribosome 1 0.500231644619753 1 0.999536710760493 hm5C_site_25395 DeepMRMD:1;iRNA_m5C:0.999536710760493 25396 chr11 608408 608408 1 + C T KIRC 608425 + 608405 608445 41 AGTCGTGGAGCTCAGGCCCCCTTCCCGGTCCCGCTCCACAT AGTTGTGGAGCTCAGGCCCCCTTCCCGGTCCCGCTCCACAT < 41bp 1 0.145224378042927 1 0.124066919088364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:608425 chr11:608408 synonymous SNV . 0 4 hm5C_associated_SNPs_24682 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25396 DeepMRMD:1;iRNA_m5C:0.999536712157815 25397 chr17 30694855 30694855 1 + C A KIRC 30694868 + 30694848 30694888 41 CCTGCAACAACTACAGAACCCCCAAAGCCTACATTCCCTGC CCTGCAAAAACTACAGAACCCCCAAAGCCTACATTCCCTGC < 41bp 1 0.550669397392317 1 0.134352713823318 experiment 0.898661205215365 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30694868 chr17:30694855 nonsynonymous SNV 0.995 3 8 hm5C_associated_SNPs_24683 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25397 DeepMRMD:1;iRNA_m5C:0.999536712157815 25398 chr3 150264590 150264590 1 + A G KIRC 150264597 + 150264577 150264617 41 TTTCCGGGACAACATGGCGCCGTCCACGCCGCTCTTGACAG TTTCCGGGACAACGTGGCGCCGTCCACGCCGCTCTTGACAG < 41bp 1 0.244103420537657 1 0.327436029911041 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2A ENSG00000144895 CDS Human protein_coding chr3:150264597 chr3:150264590 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_24684 0 0 1 0 1 Cytosol 1 0.500231646733481 1 0.999536706533038 hm5C_site_25398 DeepMRMD:1;iRNA_m5C:0.999536706533038 25399 chr1 36755101 36755101 1 + C T KIRC 36755116 + 36755096 36755136 41 GGAGTCTTTCCCAGAGAGATCCAAAAAGGAAGATCGGGGCA GGAGTTTTTCCCAGAGAGATCCAAAAAGGAAGATCGGGGCA < 41bp 1 0.46831755694214 1 0.365886211395264 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36755116 chr1:36755101 nonsynonymous SNV 0.946 1 6 hm5C_associated_SNPs_24685 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_25399 DeepMRMD:1;iRNA_m5C:0.999536712157815 25400 chr7 101891738 101891738 1 + A G KIRC 101891755 + 101891735 101891775 41 GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGC GGGGGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGC < 41bp 1 0.659631120035012 1 0.696865797042847 experiment 0.680737759929977 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891755 chr7:101891738 nonsynonymous SNV 0.998 1 4 hm5C_associated_SNPs_24686 0 0 0 0 1 Exosome 1 0.500231643921092 0.606268405914306 0.999536712157815 hm5C_site_25400 DeepMRMD:0.606268405914306;iRNA_m5C:0.999536712157815 25401 chr7 101891738 101891738 1 + A G KIRC 101891757 + 101891737 101891777 41 GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCC GGGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCC < 41bp 1 0.367854328226216 1 0.660177409648895 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891757 chr7:101891738 nonsynonymous SNV 0.998 1 2 hm5C_associated_SNPs_24687 0 0 0 0 1 Exosome 1 0.500231643927988 0.67964518070221 0.999536712144025 hm5C_site_25401 DeepMRMD:0.67964518070221;iRNA_m5C:0.999536712144025 25402 chr5 179025775 179025775 1 + T G KIRC 179025776 + 179025756 179025796 41 ACAGCACGAGAAAGACACTTCCTCTCTACTCAGGATGGAGC ACAGCACGAGAAAGACACTGCCTCTCTACTCAGGATGGAGC < 41bp 1 0.0299102955379555 1 0.0825672447681427 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179025776 chr5:179025775 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_24689 0 0 1 0 2 Ribosome 1 0.50022993583864 1 0.99954012832272 hm5C_site_25402 DeepMRMD:1;iRNA_m5C:0.99954012832272 25403 chr1 145295521 145295521 1 + C T KIRC 145295523 + 145295503 145295543 41 CTGAAGCAAGCTGAGGAGCTCAGGTGAGGGGACCCCATAGG CTGAAGCAAGCTGAGGAGTTCAGGTGAGGGGACCCCATAGG < 41bp 1 0.315294039398425 1 0.613961756229401 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBPF10 ENSG00000163386 CDS Human other chr1:145295523 chr1:145295521 nonsynonymous SNV 0.072 0 19 hm5C_associated_SNPs_24690 0 0 1 0 0 chromatin 1 0.500231643912516 0.772076487541198 0.999536712174968 hm5C_site_25403 DeepMRMD:0.772076487541198;iRNA_m5C:0.999536712174968 25404 chr10 51580556 51580556 1 + G T KIRC 51580558 + 51580538 51580578 41 CATGTATGTGTTTCCTAGGTCAAAGCTCAGATTCACAGTTG CATGTATGTGTTTCCTAGTTCAAAGCTCAGATTCACAGTTG < 41bp 1 0.380062500083853 1 0.21131244301796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NCOA4 ENSG00000138293 CDS Human other chr10:51580558 chr10:51580556 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_24691 0 0 1 0 1 Cytosol 1 0.500231972982142 1 0.999536054035716 hm5C_site_25404 DeepMRMD:1;iRNA_m5C:0.999536054035716 25405 chr5 179193074 179193074 1 + C G KIRC 179193078 + 179193058 179193098 41 CACCTCTGGTCAGCCCCGGGCGGACAATCCCAGTCCAAACC CACCTCTGGTCAGCCCGGGGCGGACAATCCCAGTCCAAACC < 41bp 1 0.10879585013967 1 0.289301723241806 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAML1 ENSG00000161021 CDS Human protein_coding chr5:179193078 chr5:179193074 nonsynonymous SNV 0.015 0 17 hm5C_associated_SNPs_24692 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25405 DeepMRMD:1;iRNA_m5C:0.999536712157815 25406 chr17 73814848 73814848 1 + A C KIRC 73814851 + 73814831 73814871 41 GTCCCCGGCATGAATGCAAACGCTCTGCCCTTCTACCCCAC GTCCCCGGCATGAATGCCAACGCTCTGCCCTTCTACCCCAC < 41bp 1 0.268888365219361 1 0.425297021865845 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814851 chr17:73814848 synonymous SNV . 0 18 hm5C_associated_SNPs_24694 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25406 DeepMRMD:1;iRNA_m5C:0.999536712157815 25407 chr1 145509177 145509177 1 + G T KIRC 145509172 + 145509152 145509192 41 TTCTTTTTCCCTAGAGGTGGCCGAAGACGCAGCAGAAGTCC TTCTTTTTCCCTAGAGGTGGCCGAATACGCAGCAGAAGTCC < 41bp 1 0.182698646705946 1 0.196975648403168 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509172 chr1:145509177 nonsynonymous SNV . 0 26 hm5C_associated_SNPs_24695 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25407 DeepMRMD:1;iRNA_m5C:0.999536712157815 25408 chr1 145509177 145509177 1 + G T KIRC 145509191 + 145509171 145509211 41 GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA GCCGAATACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA < 41bp 1 0.328045224211442 1 0.212762981653214 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509191 chr1:145509177 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_24696 0 0 1 0 1 Ribosome 1 0.5002316437174 1 0.999536712565201 hm5C_site_25408 DeepMRMD:1;iRNA_m5C:0.999536712565201 25409 chr11 73638349 73638349 1 + A T KIRC 73638335 + 73638315 73638355 41 ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCTA ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCTGATCTA < 41bp 1 0.668309647148447 1 0.869242072105408 experiment 0.663380705703105 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73638335 chr11:73638349 nonsynonymous SNV 0.997 1 35 hm5C_associated_SNPs_24697 0 0 1 0 1 Ribosome 1 0.500231643921821 0.261515855789184 0.999536712156359 hm5C_site_25409 DeepMRMD:0.261515855789184;iRNA_m5C:0.999536712156359 25410 chr9 135946953 135946953 1 + C G KIRC 135946933 + 135946913 135946953 41 ACGCCGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGC ACGCCGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGG < 41bp 1 0.311241055847949 1 0.342521399259567 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946933 chr9:135946953 synonymous SNV . 0 41 hm5C_associated_SNPs_24698 1 0 0 0 0 exosome 1 0.500231643472885 1 0.999536713054229 hm5C_site_25410 DeepMRMD:1;iRNA_m5C:0.999536713054229 not specified not specified 25411 chr9 135946953 135946953 1 + C G KIRC 135946934 + 135946914 135946954 41 CGCCGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGCG CGCCGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGG < 41bp 1 0.456570498476545 1 0.138499528169632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946934 chr9:135946953 synonymous SNV . 0 40 hm5C_associated_SNPs_24699 1 0 0 0 0 exosome 1 0.500231635343666 1 0.999536729312668 hm5C_site_25411 DeepMRMD:1;iRNA_m5C:0.999536729312668 not specified not specified 25412 chr9 135946953 135946953 1 + C G KIRC 135946936 + 135946916 135946956 41 CCGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGCGCC CCGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC < 41bp 1 0.235261070519258 1 0.0991180539131165 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946936 chr9:135946953 synonymous SNV . 0 38 hm5C_associated_SNPs_24700 1 0 0 0 0 exosome 1 0.500206189803643 1 0.999587620392713 hm5C_site_25412 DeepMRMD:1;iRNA_m5C:0.999587620392713 not specified not specified 25413 chr9 135946953 135946953 1 + C G KIRC 135946937 + 135946917 135946957 41 CGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGCGCCC CGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC < 41bp 1 0.495403983444202 1 0.122685819864273 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946937 chr9:135946953 synonymous SNV . 0 37 hm5C_associated_SNPs_24701 1 0 0 0 0 exosome 1 0.500231643951396 1 0.999536712097207 hm5C_site_25413 DeepMRMD:1;iRNA_m5C:0.999536712097207 not specified not specified 25414 chr9 135946953 135946953 1 + C G KIRC 135946955 + 135946935 135946975 41 GCCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGG GCCCACGGGTGACTCCGGGGCCCCCCCCGTGCCGCCCACGG < 41bp 1 0.211489084007566 1 0.135015517473221 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946955 chr9:135946953 synonymous SNV . 0 19 hm5C_associated_SNPs_24703 1 0 0 0 0 exosome 1 0.500231644748688 1 0.999536710502624 hm5C_site_25414 DeepMRMD:1;iRNA_m5C:0.999536710502624 not specified not specified 25415 chr9 135946953 135946953 1 + C G KIRC 135946956 + 135946936 135946976 41 CCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGG CCCACGGGTGACTCCGGGGCCCCCCCCGTGCCGCCCACGGG < 41bp 1 0.210325548458392 1 0.100198566913605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946956 chr9:135946953 synonymous SNV . 0 18 hm5C_associated_SNPs_24704 1 0 0 0 0 exosome 1 0.500231657977953 1 0.999536684044094 hm5C_site_25415 DeepMRMD:1;iRNA_m5C:0.999536684044094 not specified not specified 25416 chr9 135946953 135946953 1 + C G KIRC 135946957 + 135946937 135946977 41 CCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGT CCACGGGTGACTCCGGGGCCCCCCCCGTGCCGCCCACGGGT < 41bp 1 0.24055549030358 1 0.0811757445335388 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946957 chr9:135946953 synonymous SNV . 0 17 hm5C_associated_SNPs_24705 1 0 0 0 0 exosome 1 0.50023164362851 1 0.99953671274298 hm5C_site_25416 DeepMRMD:1;iRNA_m5C:0.99953671274298 not specified not specified 25417 chr9 135946953 135946953 1 + C G KIRC 135946958 + 135946938 135946978 41 CACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTG CACGGGTGACTCCGGGGCCCCCCCCGTGCCGCCCACGGGTG < 41bp 1 0.306481669470721 1 0.115016341209412 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946958 chr9:135946953 synonymous SNV . 0 16 hm5C_associated_SNPs_24706 1 0 0 0 0 exosome 1 0.500225387958234 1 0.999549224083533 hm5C_site_25417 DeepMRMD:1;iRNA_m5C:0.999549224083533 not specified not specified 25418 chr9 135946953 135946953 1 + C G KIRC 135946959 + 135946939 135946979 41 ACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGA ACGGGTGACTCCGGGGCCCCCCCCGTGCCGCCCACGGGTGA < 41bp 1 0.649352167293832 1 0.452252626419067 experiment 0.701295665412337 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946959 chr9:135946953 synonymous SNV . 0 15 hm5C_associated_SNPs_24707 1 0 0 0 0 exosome 1 0.500230710308221 1 0.999538579383558 hm5C_site_25418 DeepMRMD:1;iRNA_m5C:0.999538579383558 not specified not specified 25419 chr9 135946953 135946953 1 + C G KIRC 135946960 + 135946940 135946980 41 CGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGAC CGGGTGACTCCGGGGCCCCCCCCGTGCCGCCCACGGGTGAC < 41bp 1 0.522847329635378 1 0.13023242354393 experiment 0.954305340729245 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946960 chr9:135946953 synonymous SNV . 0 14 hm5C_associated_SNPs_24708 1 0 0 0 0 exosome 1 0.500231766495484 1 0.999536467009033 hm5C_site_25419 DeepMRMD:1;iRNA_m5C:0.999536467009033 not specified not specified 25420 chr9 135946953 135946953 1 + C G KIRC 135946961 + 135946941 135946981 41 GGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACT GGGTGACTCCGGGGCCCCCCCCGTGCCGCCCACGGGTGACT < 41bp 1 0.367451162187515 1 0.568037390708923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946961 chr9:135946953 synonymous SNV . 0 13 hm5C_associated_SNPs_24709 1 0 0 0 0 exosome 1 0.500231643936198 0.863925218582154 0.999536712127605 hm5C_site_25420 DeepMRMD:0.863925218582154;iRNA_m5C:0.999536712127605 not specified not specified 25421 chr9 135946953 135946953 1 + C G KIRC 135946962 + 135946942 135946982 41 GGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTC GGTGACTCCGGGGCCCCCCCCGTGCCGCCCACGGGTGACTC < 41bp 1 0.477713349709998 1 0.598185181617737 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946962 chr9:135946953 synonymous SNV . 0 12 hm5C_associated_SNPs_24710 1 0 0 0 0 exosome 1 0.500232265408913 0.803629636764526 0.999535469182175 hm5C_site_25421 DeepMRMD:0.803629636764526;iRNA_m5C:0.999535469182175 not specified not specified 25422 chr9 135946953 135946953 1 + C G KIRC 135946966 + 135946946 135946986 41 ACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGG ACTCCGGGGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGG < 41bp 1 0.379073677542034 1 0.437204539775848 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946966 chr9:135946953 synonymous SNV . 0 8 hm5C_associated_SNPs_24711 1 0 0 0 0 exosome 1 0.500231637889762 1 0.999536724220476 hm5C_site_25422 DeepMRMD:1;iRNA_m5C:0.999536724220476 not specified not specified 25423 chr9 135946953 135946953 1 + C G KIRC 135946967 + 135946947 135946987 41 CTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGG CTCCGGGGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGG < 41bp 1 0.513665551805563 1 0.131643623113632 experiment 0.972668896388875 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946967 chr9:135946953 synonymous SNV . 0 7 hm5C_associated_SNPs_24712 1 0 0 0 0 exosome 1 0.500231643858914 1 0.999536712282171 hm5C_site_25423 DeepMRMD:1;iRNA_m5C:0.999536712282171 not specified not specified 25424 chr9 135946953 135946953 1 + C G KIRC 135946969 + 135946949 135946989 41 CCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC CCGGGGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC < 41bp 1 0.236389726893777 1 0.121432453393936 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946969 chr9:135946953 synonymous SNV . 0 5 hm5C_associated_SNPs_24713 1 0 0 0 0 exosome 1 0.500231489519449 1 0.999537020961102 hm5C_site_25424 DeepMRMD:1;iRNA_m5C:0.999537020961102 not specified not specified 25425 chr9 135946953 135946953 1 + C G KIRC 135946970 + 135946950 135946990 41 CGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC CGGGGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC < 41bp 1 0.487385112462299 1 0.161492556333542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946970 chr9:135946953 synonymous SNV . 0 4 hm5C_associated_SNPs_24714 1 0 0 0 0 exosome 1 0.500231643921177 1 0.999536712157646 hm5C_site_25425 DeepMRMD:1;iRNA_m5C:0.999536712157646 not specified not specified 25426 chr9 135946954 135946954 1 + G C KIRC 135946934 + 135946914 135946954 41 CGCCGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGCG CGCCGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGCC < 41bp 1 0.445512574787438 1 0.134253323078156 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946934 chr9:135946954 nonsynonymous SNV 0.000 3 41 hm5C_associated_SNPs_24715 0 0 0 0 0 exosome 1 0.500231635290245 1 0.999536729419511 hm5C_site_25426 DeepMRMD:1;iRNA_m5C:0.999536729419511 25427 chr9 135946954 135946954 1 + G C KIRC 135946936 + 135946916 135946956 41 CCGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGCGCC CCGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGCCCC < 41bp 1 0.286369264806845 1 0.0774330198764801 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946936 chr9:135946954 nonsynonymous SNV 0.000 3 39 hm5C_associated_SNPs_24716 0 0 0 0 0 exosome 1 0.500206574573467 1 0.999586850853067 hm5C_site_25427 DeepMRMD:1;iRNA_m5C:0.999586850853067 25428 chr9 135946954 135946954 1 + G C KIRC 135946937 + 135946917 135946957 41 CGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGCGCCC CGGGCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGCCCCC < 41bp 1 0.518343567685566 1 0.172822713851929 experiment 0.963312864628868 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946937 chr9:135946954 nonsynonymous SNV 0.000 3 38 hm5C_associated_SNPs_24717 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_25428 DeepMRMD:1;iRNA_m5C:0.999536712157816 25429 chr9 135946954 135946954 1 + G C KIRC 135946949 + 135946929 135946969 41 CGTGCCGCCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGC CGTGCCGCCCACGGGTGACTCCGGCCCCCCCCCCGTGCCGC < 41bp 1 0.689394464998302 1 0.847566366195679 experiment 0.621211070003396 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946949 chr9:135946954 nonsynonymous SNV 0.000 3 26 hm5C_associated_SNPs_24719 0 0 0 0 0 exosome 1 0.500231643921095 0.304867267608642 0.99953671215781 hm5C_site_25429 DeepMRMD:0.304867267608642;iRNA_m5C:0.99953671215781 25430 chr9 135946954 135946954 1 + G C KIRC 135946950 + 135946930 135946970 41 GTGCCGCCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCC GTGCCGCCCACGGGTGACTCCGGCCCCCCCCCCGTGCCGCC < 41bp 1 0.659865002380732 1 0.872739255428314 experiment 0.680269995238536 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946950 chr9:135946954 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_24720 0 0 0 0 0 exosome 1 0.500231647094263 0.254521489143372 0.999536705811474 hm5C_site_25430 DeepMRMD:0.254521489143372;iRNA_m5C:0.999536705811474 25431 chr9 135946954 135946954 1 + G C KIRC 135946953 + 135946933 135946973 41 CCGCCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCAC CCGCCCACGGGTGACTCCGGCCCCCCCCCCGTGCCGCCCAC < 41bp 1 0.275139394914651 1 0.402964174747467 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946953 chr9:135946954 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_24721 0 0 0 0 0 exosome 1 0.500231644014551 1 0.999536711970897 hm5C_site_25431 DeepMRMD:1;iRNA_m5C:0.999536711970897 25432 chr9 135946954 135946954 1 + G C KIRC 135946955 + 135946935 135946975 41 GCCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGG GCCCACGGGTGACTCCGGCCCCCCCCCCGTGCCGCCCACGG < 41bp 1 0.24670505895008 1 0.112912207841873 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946955 chr9:135946954 nonsynonymous SNV 0.000 3 20 hm5C_associated_SNPs_24722 0 0 0 0 0 exosome 1 0.500231644749289 1 0.999536710501422 hm5C_site_25432 DeepMRMD:1;iRNA_m5C:0.999536710501422 25433 chr9 135946954 135946954 1 + G C KIRC 135946956 + 135946936 135946976 41 CCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGG CCCACGGGTGACTCCGGCCCCCCCCCCGTGCCGCCCACGGG < 41bp 1 0.237607553306656 1 0.164464741945267 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946956 chr9:135946954 nonsynonymous SNV 0.000 3 19 hm5C_associated_SNPs_24723 0 0 0 0 0 exosome 1 0.500232932781486 1 0.999534134437027 hm5C_site_25433 DeepMRMD:1;iRNA_m5C:0.999534134437027 25434 chr9 135946954 135946954 1 + G C KIRC 135946957 + 135946937 135946977 41 CCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGT CCACGGGTGACTCCGGCCCCCCCCCCGTGCCGCCCACGGGT < 41bp 1 0.240261529685802 1 0.101779401302338 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946957 chr9:135946954 nonsynonymous SNV 0.000 3 18 hm5C_associated_SNPs_24724 0 0 0 0 0 exosome 1 0.500231643629058 1 0.999536712741884 hm5C_site_25434 DeepMRMD:1;iRNA_m5C:0.999536712741884 25435 chr9 135946954 135946954 1 + G C KIRC 135946958 + 135946938 135946978 41 CACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTG CACGGGTGACTCCGGCCCCCCCCCCGTGCCGCCCACGGGTG < 41bp 1 0.278154240980137 1 0.135487347841263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946958 chr9:135946954 nonsynonymous SNV 0.000 3 17 hm5C_associated_SNPs_24725 0 0 0 0 0 exosome 1 0.500235244808404 1 0.999529510383192 hm5C_site_25435 DeepMRMD:1;iRNA_m5C:0.999529510383192 25436 chr9 135946954 135946954 1 + G C KIRC 135946959 + 135946939 135946979 41 ACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGA ACGGGTGACTCCGGCCCCCCCCCCGTGCCGCCCACGGGTGA < 41bp 1 0.627278182669441 1 0.492181986570358 experiment 0.745443634661117 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946959 chr9:135946954 nonsynonymous SNV 0.000 3 16 hm5C_associated_SNPs_24726 0 0 0 0 0 exosome 1 0.500230711426852 1 0.999538577146297 hm5C_site_25436 DeepMRMD:1;iRNA_m5C:0.999538577146297 25437 chr9 135946954 135946954 1 + G C KIRC 135946960 + 135946940 135946980 41 CGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGAC CGGGTGACTCCGGCCCCCCCCCCGTGCCGCCCACGGGTGAC < 41bp 1 0.477417640477118 1 0.176206201314926 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946960 chr9:135946954 nonsynonymous SNV 0.000 3 15 hm5C_associated_SNPs_24727 0 0 0 0 0 exosome 1 0.500239483264839 1 0.999521033470323 hm5C_site_25437 DeepMRMD:1;iRNA_m5C:0.999521033470323 25438 chr9 135946954 135946954 1 + G C KIRC 135946961 + 135946941 135946981 41 GGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACT GGGTGACTCCGGCCCCCCCCCCGTGCCGCCCACGGGTGACT < 41bp 1 0.286605654749133 1 0.726361811161041 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946961 chr9:135946954 nonsynonymous SNV 0.000 3 14 hm5C_associated_SNPs_24728 0 0 0 0 0 exosome 1 0.500231643936023 0.547276377677918 0.999536712127953 hm5C_site_25438 DeepMRMD:0.547276377677918;iRNA_m5C:0.999536712127953 25439 chr9 135946954 135946954 1 + G C KIRC 135946962 + 135946942 135946982 41 GGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTC GGTGACTCCGGCCCCCCCCCCGTGCCGCCCACGGGTGACTC < 41bp 1 0.411295816384659 1 0.477422326803207 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946962 chr9:135946954 nonsynonymous SNV 0.000 3 13 hm5C_associated_SNPs_24729 0 0 0 0 0 exosome 1 0.50023277455037 1 0.99953445089926 hm5C_site_25439 DeepMRMD:1;iRNA_m5C:0.99953445089926 25440 chr9 135946954 135946954 1 + G C KIRC 135946966 + 135946946 135946986 41 ACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGG ACTCCGGCCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGG < 41bp 1 0.266864664531512 1 0.441602289676666 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946966 chr9:135946954 nonsynonymous SNV 0.000 3 9 hm5C_associated_SNPs_24730 0 0 0 0 0 exosome 1 0.500229661437337 1 0.999540677125325 hm5C_site_25440 DeepMRMD:1;iRNA_m5C:0.999540677125325 25441 chr9 135946954 135946954 1 + G C KIRC 135946967 + 135946947 135946987 41 CTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGG CTCCGGCCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGG < 41bp 1 0.43187592981578 1 0.128272950649261 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946967 chr9:135946954 nonsynonymous SNV 0.000 3 8 hm5C_associated_SNPs_24731 0 0 0 0 0 exosome 1 0.500231643858431 1 0.999536712283138 hm5C_site_25441 DeepMRMD:1;iRNA_m5C:0.999536712283138 25442 chr9 135946954 135946954 1 + G C KIRC 135946969 + 135946949 135946989 41 CCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC CCGGCCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC < 41bp 1 0.20286559319921 1 0.0722767412662506 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946969 chr9:135946954 nonsynonymous SNV 0.000 3 6 hm5C_associated_SNPs_24732 0 0 0 0 0 exosome 1 0.500231490334823 1 0.999537019330354 hm5C_site_25442 DeepMRMD:1;iRNA_m5C:0.999537019330354 25443 chr9 135946954 135946954 1 + G C KIRC 135946970 + 135946950 135946990 41 CGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC CGGCCCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC < 41bp 1 0.449286210646427 1 0.131886422634125 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946970 chr9:135946954 nonsynonymous SNV 0.000 3 5 hm5C_associated_SNPs_24733 0 0 0 0 0 exosome 1 0.500231827122725 1 0.999536345754551 hm5C_site_25443 DeepMRMD:1;iRNA_m5C:0.999536345754551 25444 chr5 53814577 53814577 1 + T A KIRC 53814572 + 53814552 53814592 41 AGCTGTGCGTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAG AGCTGTGCGTGGTGCTGGGGCCCTAAGGCCCCGAGTGGCAG < 41bp 1 0.263452861556775 1 0.0768918693065643 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814572 chr5:53814577 stopgain 0.997 0 26 hm5C_associated_SNPs_24734 0 0 0 0 0 chromatin 1 0.500231643939783 1 0.999536712120434 hm5C_site_25444 DeepMRMD:1;iRNA_m5C:0.999536712120434 25445 chr5 53814577 53814577 1 + T A KIRC 53814573 + 53814553 53814593 41 GCTGTGCGTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAGG GCTGTGCGTGGTGCTGGGGCCCTAAGGCCCCGAGTGGCAGG < 41bp 1 0.257843148923432 1 0.17644602060318 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814573 chr5:53814577 stopgain 0.997 0 25 hm5C_associated_SNPs_24735 0 0 0 0 0 chromatin 1 0.500231643921282 1 0.999536712157435 hm5C_site_25445 DeepMRMD:1;iRNA_m5C:0.999536712157435 25446 chr5 53814577 53814577 1 + T A KIRC 53814580 + 53814560 53814600 41 GTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAGGAGAACCC GTGGTGCTGGGGCCCTAAGGCCCCGAGTGGCAGGAGAACCC < 41bp 1 0.477302517023144 1 0.537674844264984 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814580 chr5:53814577 stopgain 0.997 0 18 hm5C_associated_SNPs_24736 0 0 0 0 0 chromatin 1 0.500231643921092 0.924650311470032 0.999536712157815 hm5C_site_25446 DeepMRMD:0.924650311470032;iRNA_m5C:0.999536712157815 25447 chr5 53814577 53814577 1 + T A KIRC 53814582 + 53814562 53814602 41 GGTGCTGGGGCCCTATGGCCCCGAGTGGCAGGAGAACCCCT GGTGCTGGGGCCCTAAGGCCCCGAGTGGCAGGAGAACCCCT < 41bp 1 0.39207021039407 1 0.631058156490326 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814582 chr5:53814577 stopgain 0.997 0 16 hm5C_associated_SNPs_24738 0 0 0 0 0 chromatin 1 0.500231643921092 0.737883687019348 0.999536712157816 hm5C_site_25447 DeepMRMD:0.737883687019348;iRNA_m5C:0.999536712157816 25448 chr5 53814577 53814577 1 + T A KIRC 53814583 + 53814563 53814603 41 GTGCTGGGGCCCTATGGCCCCGAGTGGCAGGAGAACCCCTA GTGCTGGGGCCCTAAGGCCCCGAGTGGCAGGAGAACCCCTA < 41bp 1 0.675869643691014 1 0.839602947235107 experiment 0.648260712617971 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814583 chr5:53814577 stopgain 0.997 0 15 hm5C_associated_SNPs_24739 0 0 0 0 0 chromatin 1 0.500231643921092 0.320794105529786 0.999536712157815 hm5C_site_25448 DeepMRMD:0.320794105529786;iRNA_m5C:0.999536712157815 25449 chr7 101813771 101813771 1 + C A KIRC 101813790 + 101813770 101813810 41 GCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA GATCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGA < 41bp 1 0.0464627629564133 1 0.594947576522827 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101813790 chr7:101813771 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_24740 0 0 1 0 2 Exosome 1 0.500231690126448 0.810104846954346 0.999536619747103 hm5C_site_25449 DeepMRMD:0.810104846954346;iRNA_m5C:0.999536619747103 25450 chr14 65511120 65511120 1 + C T KIRC 65511109 + 65511089 65511129 41 CTGGTGGATGGCTGCTACTCCTTCTGGCAGGCGGGGCTCCT CTGGTGGATGGCTGCTACTCCTTCTGGCAGGTGGGGCTCCT < 41bp 1 0.470003593721967 1 0.0307300388813019 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65511109 chr14:65511120 nonsynonymous SNV 0.986 3 32 hm5C_associated_SNPs_24741 0 0 1 0 2 unknown 1 0.500231643921081 1 0.999536712157839 hm5C_site_25450 DeepMRMD:1;iRNA_m5C:0.999536712157839 25451 chr1 16058448 16058448 1 + A C KIRC 16058464 + 16058444 16058484 41 GGTCATTCTCTCCGACCGGCCCTGCCTGGAGCTAAGTGCCG GGTCCTTCTCTCCGACCGGCCCTGCCTGGAGCTAAGTGCCG < 41bp 1 0.0624927432212068 1 0.046809583902359 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16058464 chr1:16058448 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_24742 0 0 1 0 2 chromatin 1 0.500232980380754 1 0.999534039238492 hm5C_site_25451 DeepMRMD:1;iRNA_m5C:0.999534039238492 25452 chr3 31658488 31658488 1 + G C KIRC 31658471 + 31658451 31658491 41 TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGAGTTC TCTTGCAGTATCTGAGAGACCGATTAACAAAACAAGACTTC < 41bp 1 0.310051398687645 1 0.35896897315979 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31658471 chr3:31658488 nonsynonymous SNV 0.996 1 38 hm5C_associated_SNPs_24743 0 0 1 0 2 Nucleus 1 0.500231235034282 1 0.999537529931436 hm5C_site_25452 DeepMRMD:1;iRNA_m5C:0.999537529931436 25453 chr4 79420893 79420893 1 + A C KIRC 79420912 + 79420892 79420932 41 GAAGAAGCTGCATACCAAGTCCGGGAACCCGCAGGCCCAGA GCAGAAGCTGCATACCAAGTCCGGGAACCCGCAGGCCCAGA < 41bp 1 0.234453714863027 1 0.770354747772217 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79420912 chr4:79420893 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_24745 0 0 1 0 1 Nucleus 1 0.500231643921092 0.459290504455566 0.999536712157815 hm5C_site_25453 DeepMRMD:0.459290504455566;iRNA_m5C:0.999536712157815 25454 chr19 804177 804177 1 + C A KIRC 804178 + 804158 804198 41 CTGCCCTTTGGGAAGGTCACCAACCTCCTGATGCTGAAGGG CTGCCCTTTGGGAAGGTCAACAACCTCCTGATGCTGAAGGG < 41bp 1 0.245272934957628 1 0.108772069215775 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804178 chr19:804177 nonsynonymous SNV 0.989 4 20 hm5C_associated_SNPs_24746 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25454 DeepMRMD:1;iRNA_m5C:0.999536712157815 25455 chr21 45560224 45560224 1 + G C KIRC 45560204 + 45560184 45560224 41 CGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG CGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGC < 41bp 1 0.659474406229213 1 0.211061209440231 experiment 0.681051187541573 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560204 chr21:45560224 nonsynonymous SNV 0.119 3 41 hm5C_associated_SNPs_24747 0 0 0 0 2 Ribosome 1 0.500231643901774 1 0.999536712196452 hm5C_site_25455 DeepMRMD:1;iRNA_m5C:0.999536712196452 25456 chr19 36221724 36221724 1 + C G KIRC 36221735 + 36221715 36221755 41 TGGAGGCTGCAGAGGAGAACCAGACCATTGTGCACAGCCCC TGGAGGCTGGAGAGGAGAACCAGACCATTGTGCACAGCCCC < 41bp 1 0.189155024014438 1 0.789258539676666 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36221735 chr19:36221724 nonsynonymous SNV 0.996 2 10 hm5C_associated_SNPs_24748 0 0 1 0 1 chromatin 1 0.500231643921713 0.421482920646668 0.999536712156574 hm5C_site_25456 DeepMRMD:0.421482920646668;iRNA_m5C:0.999536712156574 25457 chr11 65402821 65402821 1 + C T KIRC 65402802 + 65402782 65402822 41 GGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCC GGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGTC < 41bp 1 0.411268649498144 1 0.470778673887253 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402802 chr11:65402821 nonsynonymous SNV 0.991 2 40 hm5C_associated_SNPs_24749 0 0 0 0 1 Ribosome 1 0.500231432300385 1 0.99953713539923 hm5C_site_25457 DeepMRMD:1;iRNA_m5C:0.99953713539923 25458 chr11 65402821 65402821 1 + C T KIRC 65402804 + 65402784 65402824 41 TGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCCCT TGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGTCCT < 41bp 1 0.0138707333378553 1 0.0501847565174103 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402804 chr11:65402821 nonsynonymous SNV 0.991 2 38 hm5C_associated_SNPs_24750 0 0 0 0 1 Ribosome 1 0.500234140246818 1 0.999531719506363 hm5C_site_25458 DeepMRMD:1;iRNA_m5C:0.999531719506363 25459 chr11 65402821 65402821 1 + C T KIRC 65402805 + 65402785 65402825 41 GACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCCCTC GACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGTCCTC < 41bp 1 0.0463556023659155 1 0.0556186139583588 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402805 chr11:65402821 nonsynonymous SNV 0.991 2 37 hm5C_associated_SNPs_24751 0 0 0 0 1 Ribosome 1 0.50023164465174 1 0.999536710696521 hm5C_site_25459 DeepMRMD:1;iRNA_m5C:0.999536710696521 25460 chr11 65402821 65402821 1 + C T KIRC 65402834 + 65402814 65402854 41 CAACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATG CAACACGTCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATG < 41bp 1 0.124011469474066 1 0.0738168954849243 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402834 chr11:65402821 nonsynonymous SNV 0.991 2 8 hm5C_associated_SNPs_24752 0 0 0 0 1 Ribosome 1 0.500231644064341 1 0.999536711871318 hm5C_site_25460 DeepMRMD:1;iRNA_m5C:0.999536711871318 25461 chr11 65402821 65402821 1 + C T KIRC 65402836 + 65402816 65402856 41 ACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGAT ACACGTCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGAT < 41bp 1 0.148339952367737 1 0.11758103966713 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402836 chr11:65402821 nonsynonymous SNV 0.991 2 6 hm5C_associated_SNPs_24753 0 0 0 0 1 Ribosome 1 0.500231491984417 1 0.999537016031165 hm5C_site_25461 DeepMRMD:1;iRNA_m5C:0.999537016031165 25462 chr11 65402821 65402821 1 + C T KIRC 65402839 + 65402819 65402859 41 CGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCC CGTCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCC < 41bp 1 0.299445021177878 1 0.91154944896698 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402839 chr11:65402821 nonsynonymous SNV 0.991 2 3 hm5C_associated_SNPs_24754 0 0 0 0 1 Ribosome 1 0.500231644657608 0.17690110206604 0.999536710684783 hm5C_site_25462 DeepMRMD:0.17690110206604;iRNA_m5C:0.999536710684783 25463 chr11 65402821 65402821 1 + C T KIRC 65402841 + 65402821 65402861 41 CCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTC TCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTC < 41bp 1 0.0652006792468373 1 0.0854894518852234 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402841 chr11:65402821 nonsynonymous SNV 0.991 2 1 hm5C_associated_SNPs_24755 0 0 0 0 1 Ribosome 1 0.500231643912401 1 0.999536712175198 hm5C_site_25463 DeepMRMD:1;iRNA_m5C:0.999536712175198 25464 chr15 36984363 36984363 1 + G T KIRC 36984350 + 36984330 36984370 41 ATTGTGAACGACTGCTGTTACGGACCACTAGTGGACTGCAT ATTGTGAACGACTGCTGTTACGGACCACTAGTGTACTGCAT < 41bp 1 0.504620639182619 1 0.857499837875366 experiment 0.990758721634761 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36984350 chr15:36984363 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_24756 0 0 0 0 2 Cytosol 1 0.500230767802453 0.285000324249268 0.999538464395094 hm5C_site_25464 DeepMRMD:0.285000324249268;iRNA_m5C:0.999538464395094 25465 chr7 150840457 150840457 1 + A G KIRC 150840477 + 150840457 150840497 41 AGTATGAACAGAAGCTCTTCCTGGCCCCACTGCCAAGCTCA GGTATGAACAGAAGCTCTTCCTGGCCCCACTGCCAAGCTCA < 41bp 1 0.386721745839713 1 0.247497797012329 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150840477 chr7:150840457 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_24757 0 0 1 0 1 Cytosol 1 0.500231628408883 1 0.999536743182233 hm5C_site_25465 DeepMRMD:1;iRNA_m5C:0.999536743182233 25466 chr19 3192504 3192504 1 + C T KIRC 3192513 + 3192493 3192533 41 GGAGGCGCGCACGATGGCGGCGGAGGTGCTGAGCCGCCGCT GGAGGCGCGCATGATGGCGGCGGAGGTGCTGAGCCGCCGCT < 41bp 1 0.699657264583716 1 0.837207794189453 experiment 0.600685470832569 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3192513 chr19:3192504 nonsynonymous SNV 0.459 4 12 hm5C_associated_SNPs_24759 0 0 0 0 1 Ribosome 1 0.500231643927663 0.325584411621094 0.999536712144673 hm5C_site_25466 DeepMRMD:0.325584411621094;iRNA_m5C:0.999536712144673 25467 chr17 53014035 53014035 1 + T C KIRC 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TTCTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA < 41bp 1 0.648782756185046 1 0.613574624061584 experiment 0.702434487629909 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014035 synonymous SNV . 0 3 hm5C_associated_SNPs_24760 0 0 1 0 2 Cytosol 1 0.500231643921092 0.772850751876832 0.999536712157815 hm5C_site_25467 DeepMRMD:0.772850751876832;iRNA_m5C:0.999536712157815 25468 chr10 75520026 75520026 1 + C T KIRC 75520010 + 75519990 75520030 41 TGGACAGAGTTTTGGAGGGCCCTCAGTGAGCCAGCCCAACC TGGACAGAGTTTTGGAGGGCCCTCAGTGAGCCAGCCTAACC < 41bp 1 0.240928368478529 1 0.055112898349762 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520010 chr10:75520026 synonymous SNV . 0 37 hm5C_associated_SNPs_24761 0 0 1 0 0 Nucleus 1 0.500231642860928 1 0.999536714278144 hm5C_site_25468 DeepMRMD:1;iRNA_m5C:0.999536714278144 25469 chr19 3533330 3533330 1 + C A KIRC 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATCCTTGTATGGAAGTACCCCTCCCTGACCCAGGTGGCCA < 41bp 1 0.0894063095562136 1 0.0446474254131317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533330 synonymous SNV . 0 10 hm5C_associated_SNPs_24762 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25469 DeepMRMD:1;iRNA_m5C:0.999536712157815 25470 chr22 32188047 32188047 1 + T C KIRC 32188034 + 32188014 32188054 41 CTTAGGAGAAGAACTGTAGTCATGAAGTGACAGTGGTCCTG CTTAGGAGAAGAACTGTAGTCATGAAGTGACAGCGGTCCTG < 41bp 1 0.592175246889081 1 0.326352715492249 experiment 0.815649506221838 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32188034 chr22:32188047 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_24763 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_25470 DeepMRMD:1;iRNA_m5C:0.999536712157815 25471 chr6 30692126 30692126 1 + C A KIRC 30692122 + 30692102 30692142 41 GTATCAGCAGTACCAGGATGCCACCGCAGAAGAGGAGGAGG GTATCAGCAGTACCAGGATGCCACAGCAGAAGAGGAGGAGG < 41bp 1 0.307890085970292 1 0.407739996910095 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TUBB ENSG00000196230 CDS Human protein_coding chr6:30692122 chr6:30692126 synonymous SNV . 0 25 hm5C_associated_SNPs_24764 0 0 1 0 0 Cytosol 1 0.500231663581025 1 0.99953667283795 hm5C_site_25471 DeepMRMD:1;iRNA_m5C:0.99953667283795 25472 chr6 133844277 133844277 1 + C T KIRC 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGGTGTTTTCCCCATTGAGAATATTTACAGTG < 41bp 1 0.0877691508981243 1 0.217947751283646 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844277 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_24767 0 0 0 0 2 Cytosol 1 0.500231643937041 1 0.999536712125918 hm5C_site_25472 DeepMRMD:1;iRNA_m5C:0.999536712125918 25473 chr6 133844277 133844277 1 + C T KIRC 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGGTGTTTTCCCCATTGAGAATATTTACAGTGC < 41bp 1 0.0865218104767065 1 0.202664941549301 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844277 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_24768 0 0 0 0 2 Cytosol 1 0.500231643921153 1 0.999536712157694 hm5C_site_25473 DeepMRMD:1;iRNA_m5C:0.999536712157694 25474 chr12 71977609 71977609 1 + G T KIRC 71977616 + 71977596 71977636 41 GAACATGCTCACGGGAGTCTCCAGTGCCGTGCTGGCTGGTG GAACATGCTCACGTGAGTCTCCAGTGCCGTGCTGGCTGGTG < 41bp 1 0.376529001832534 1 0.553492426872253 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LGR5 ENSG00000139292 CDS Human protein_coding chr12:71977616 chr12:71977609 stopgain 0.006 1 14 hm5C_associated_SNPs_24770 0 0 1 0 1 Nucleus 1 0.50023164004967 0.893015146255494 0.99953671990066 hm5C_site_25474 DeepMRMD:0.893015146255494;iRNA_m5C:0.99953671990066 25475 chr17 18137246 18137246 1 + C T KIRC 18137230 + 18137210 18137250 41 CTCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGCGCAG CTCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGTGCAG < 41bp 1 0.41552445038197 1 0.717115581035614 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18137230 chr17:18137246 nonsynonymous SNV 0.009 1 37 hm5C_associated_SNPs_24772 0 0 1 0 2 Cytosol 1 0.500231641463381 0.565768837928772 0.999536717073238 hm5C_site_25475 DeepMRMD:0.565768837928772;iRNA_m5C:0.999536717073238 25476 chr17 18137246 18137246 1 + C T KIRC 18137231 + 18137211 18137251 41 TCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGCGCAGG TCGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGTGCAGG < 41bp 1 0.361382008046193 1 0.790323615074158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18137231 chr17:18137246 nonsynonymous SNV 0.009 1 36 hm5C_associated_SNPs_24773 0 0 1 0 2 Cytosol 1 0.50023164392262 0.419352769851684 0.99953671215476 hm5C_site_25476 DeepMRMD:0.419352769851684;iRNA_m5C:0.99953671215476 25477 chr17 18137246 18137246 1 + C T KIRC 18137232 + 18137212 18137252 41 CGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGCGCAGGT CGAGGGGCAGACGCTTGCCCCAGGCGAGGTTCTGTGCAGGT < 41bp 1 0.525912748230883 1 0.818464636802673 experiment 0.948174503538234 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18137232 chr17:18137246 nonsynonymous SNV 0.009 1 35 hm5C_associated_SNPs_24774 0 0 1 0 2 Cytosol 1 0.500231643489881 0.363070726394654 0.999536713020238 hm5C_site_25477 DeepMRMD:0.363070726394654;iRNA_m5C:0.999536713020238 25478 chr20 44045300 44045300 1 + G A KIRC 44045286 + 44045266 44045306 41 GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGT GGGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAAAGCTGT < 41bp 1 0.598667391959998 1 0.0901285111904144 experiment 0.802665216080005 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045286 chr20:44045300 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_24775 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25478 DeepMRMD:1;iRNA_m5C:0.999536712157815 25479 chr20 44045300 44045300 1 + G A KIRC 44045287 + 44045267 44045307 41 GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTG GGGCCACCCTTCCTGCAGGCCCCATCAGGTGCAAAGCTGTG < 41bp 1 0.179393519611595 1 0.0513637065887451 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045287 chr20:44045300 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_24776 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25479 DeepMRMD:1;iRNA_m5C:0.999536712157815 25480 chr20 44045300 44045300 1 + G A KIRC 44045288 + 44045268 44045308 41 GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGG GGCCACCCTTCCTGCAGGCCCCATCAGGTGCAAAGCTGTGG < 41bp 1 0.124481738249787 1 0.120395392179489 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045288 chr20:44045300 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_24777 0 0 1 0 2 Ribosome 1 0.500231640625923 1 0.999536718748154 hm5C_site_25480 DeepMRMD:1;iRNA_m5C:0.999536718748154 25481 chr20 44045300 44045300 1 + G A KIRC 44045289 + 44045269 44045309 41 GCCACCCTTCCTGCAGGCCCCATCAGGTGCAGAGCTGTGGG GCCACCCTTCCTGCAGGCCCCATCAGGTGCAAAGCTGTGGG < 41bp 1 0.679779711318067 1 0.182470738887787 experiment 0.640440577363866 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PIGT ENSG00000124155 CDS Human protein_coding chr20:44045289 chr20:44045300 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_24778 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25481 DeepMRMD:1;iRNA_m5C:0.999536712157815 25482 chr4 178262698 178262698 1 + C T KIRC 178262712 + 178262692 178262732 41 TCAGTGCCACTGCAGAATAACTGTGTGCCGCTTTGGGGACA TCAGTGTCACTGCAGAATAACTGTGTGCCGCTTTGGGGACA < 41bp 1 0.537372794896597 1 0.0660403668880463 experiment 0.925254410206805 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262712 chr4:178262698 synonymous SNV . 0 7 hm5C_associated_SNPs_24779 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_25482 DeepMRMD:1;iRNA_m5C:0.999536712157815 25483 chr15 45003781 45003781 1 + C T KIRC 45003787 + 45003767 45003807 41 CTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATC CTGTGCTCGCGCTATTCTCTCTTTCTGGCCTGGAGGCTATC < 41bp 1 0.125930013018081 1 0.0447560250759125 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B2M ENSG00000166710 CDS Human protein_coding chr15:45003787 chr15:45003781 nonsynonymous SNV 0.001 0 15 hm5C_associated_SNPs_24780 0 0 1 0 0 Ribosome 1 0.500231643921237 1 0.999536712157525 hm5C_site_25483 DeepMRMD:1;iRNA_m5C:0.999536712157525 25484 chr20 42680130 42680130 1 + C T KIRC 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATCACCGCCGGGGAGCAAGTCAGTGACCCCCTCTCC < 41bp 1 0.444657676110891 1 0.291256010532379 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680130 nonsynonymous SNV 0.815 4 29 hm5C_associated_SNPs_24781 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25484 DeepMRMD:1;iRNA_m5C:0.999536712157815 25485 chr1 16257994 16257994 1 + T C KIRC 16257979 + 16257959 16257999 41 TTTTCCCAGGCAGAGAGCAACGTAGATCCAGAGCCTGACAG TTTTCCCAGGCAGAGAGCAACGTAGATCCAGAGCCCGACAG < 41bp 1 0.292056050477986 1 0.104187041521072 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPEN ENSG00000065526 CDS Human protein_coding chr1:16257979 chr1:16257994 synonymous SNV . 0 36 hm5C_associated_SNPs_24782 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921101 1 0.999536712157798 hm5C_site_25485 DeepMRMD:1;iRNA_m5C:0.999536712157798 25486 chr1 16257995 16257995 1 + G A KIRC 16257979 + 16257959 16257999 41 TTTTCCCAGGCAGAGAGCAACGTAGATCCAGAGCCTGACAG TTTTCCCAGGCAGAGAGCAACGTAGATCCAGAGCCTAACAG < 41bp 1 0.220574878928435 1 0.115243256092072 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPEN ENSG00000065526 CDS Human protein_coding chr1:16257979 chr1:16257995 nonsynonymous SNV 0.008 0 37 hm5C_associated_SNPs_24783 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_25486 DeepMRMD:1;iRNA_m5C:0.999536712157815 25487 chr5 139946853 139946853 1 + T C KIRC 139946837 + 139946817 139946857 41 GATGCTACTCCTATCCACTGCCATGTACGGTGCCCATGCCC GATGCTACTCCTATCCACTGCCATGTACGGTGCCCACGCCC < 41bp 1 0.221533768005058 1 0.31523522734642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC35A4 ENSG00000176087 CDS Human protein_coding chr5:139946837 chr5:139946853 synonymous SNV . 0 37 hm5C_associated_SNPs_24784 0 0 1 0 0 Ribosome 1 0.500231634551671 1 0.999536730896658 hm5C_site_25487 DeepMRMD:1;iRNA_m5C:0.999536730896658 25488 chr12 57548478 57548478 1 + C T KIRC 57548481 + 57548461 57548501 41 CAGACCATCATCCAGGGCATCCTGGTGAGGGAGCTACTGTC CAGACCATCATCCAGGGTATCCTGGTGAGGGAGCTACTGTC < 41bp 1 0.0978864737412048 1 0.138855069875717 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57548481 chr12:57548478 synonymous SNV . 0 18 hm5C_associated_SNPs_24785 0 0 1 0 1 Exosome 1 0.500229901580733 1 0.999540196838534 hm5C_site_25488 DeepMRMD:1;iRNA_m5C:0.999540196838534 25489 chr6 27806755 27806755 1 + G A KIRP 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCGTGCGCCTGCTGCTGCCAGGGAAGCTGGCCAAG < 41bp 1 0.625247926302723 1 0.0955115854740143 experiment 0.749504147394553 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806755 nonsynonymous SNV 0.992 1 30 hm5C_associated_SNPs_24787 0 0 1 0 2 Ribosome 1 0.500231643934234 1 0.999536712131532 hm5C_site_25489 DeepMRMD:1;iRNA_m5C:0.999536712131532 25490 chr1 173454563 173454563 1 + A G KIRP 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATG < 41bp 1 0.0766763796075918 1 0.016430526971817 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454563 nonsynonymous SNV 0.581 0 41 hm5C_associated_SNPs_24788 0 0 1 0 2 Ribosome 1 0.50023164392074 1 0.999536712158519 hm5C_site_25490 DeepMRMD:1;iRNA_m5C:0.999536712158519 25491 chr16 85100865 85100865 1 + A C KIRP 85100859 + 85100839 85100879 41 GAATGACATGGGCGAGTCGCCCTCGCACCCGTCCTGGGACC GAATGACATGGGCGAGTCGCCCTCGCCCCCGTCCTGGGACC < 41bp 1 0.10633089166718 1 0.200689196586609 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85100859 chr16:85100865 nonsynonymous SNV 0.999 2 27 hm5C_associated_SNPs_24789 0 0 0 0 0 Nucleus 1 0.500231006607406 1 0.999537986785189 hm5C_site_25491 DeepMRMD:1;iRNA_m5C:0.999537986785189 25492 chr17 37358657 37358657 1 + C T KIRP 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCCGGAAAAACATCTTGGCCCGCCGGAAGGGCAGGCACA < 41bp 1 0.217751989190561 1 0.0335198640823364 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358657 nonsynonymous SNV 0.995 1 15 hm5C_associated_SNPs_24790 0 0 1 0 2 chromatin 1 0.500231643934318 1 0.999536712131363 hm5C_site_25492 DeepMRMD:1;iRNA_m5C:0.999536712131363 25493 chr17 37358657 37358657 1 + C T KIRP 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCCGGAAAAACATCTTGGCCCGCCGGAAGGGCAGGCACAT < 41bp 1 0.23137398462548 1 0.0945356488227844 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358657 nonsynonymous SNV 0.995 1 14 hm5C_associated_SNPs_24791 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_25493 DeepMRMD:1;iRNA_m5C:0.999536712157814 25494 chr1 2066777 2066777 1 + C T KIRP 2066765 + 2066745 2066785 41 CGTGCCAACGGCCACCTCTTCCAAGCCAAGCGCTTTAACAG CGTGCCAACGGCCACCTCTTCCAAGCCAAGCGTTTTAACAG < 41bp 1 0.274217872120941 1 0.215989232063293 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2066765 chr1:2066777 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_24794 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25494 DeepMRMD:1;iRNA_m5C:0.999536712157815 25495 chr6 29910554 29910554 1 + T G KIRP 29910541 + 29910521 29910561 41 TGCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCTTCAC TGCTCGCCCCCAGGCTCCCACTCCATGAGGTATGTCTTCAC < 41bp 1 0.666264930180055 1 0.986725211143494 experiment 0.66747013963989 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29910541 chr6:29910554 nonsynonymous SNV 0.048 3 34 hm5C_associated_SNPs_24795 0 0 1 0 0 Endoplasmic reticulum 1 0.500231676230435 0.026549577713012 0.99953664753913 hm5C_site_25495 DeepMRMD:0.026549577713012;iRNA_m5C:0.99953664753913 25496 chr2 235943690 235943690 1 + C T KIRP 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGGCCTCCTTCGCTGCAAGTCAGAGGGGACC < 41bp 1 0.225182496733573 1 0.184947639703751 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943690 nonsynonymous SNV 0.800 1 19 hm5C_associated_SNPs_24796 0 0 1 0 2 cytosol 1 0.500231643924607 1 0.999536712150786 hm5C_site_25496 DeepMRMD:1;iRNA_m5C:0.999536712150786 25497 chr3 47374713 47374713 1 + C A KIRP 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGATGCTG < 41bp 1 0.286102478203351 1 0.157342433929443 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374713 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_24797 0 0 1 0 2 Cytosol 1 0.500231643812177 1 0.999536712375647 hm5C_site_25497 DeepMRMD:1;iRNA_m5C:0.999536712375647 25498 chr16 2011289 2011289 1 + A T KIRP 2011269 + 2011249 2011289 41 ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGA ATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGGT < 41bp 1 0.570779159558711 1 0.362411141395569 experiment 0.858441680882578 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011269 chr16:2011289 nonsynonymous SNV 0.952 4 41 hm5C_associated_SNPs_24798 0 0 1 0 1 Ribosome 1 0.500231667429434 1 0.999536665141131 hm5C_site_25498 DeepMRMD:1;iRNA_m5C:0.999536665141131 25499 chr8 42977953 42977953 1 + A G KIRP 42977935 + 42977915 42977955 41 GACTCCCTCAGAAAGACCCACTGCCCAGGACGTTCTGGAGA GACTCCCTCAGAAAGACCCACTGCCCAGGACGTTCTGGGGA < 41bp 1 0.300684303260426 1 0.0992777645587921 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POMK ENSG00000185900 CDS Human protein_coding chr8:42977935 chr8:42977953 nonsynonymous SNV 0.141 1 39 hm5C_associated_SNPs_24800 0 0 1 0 0 Ribosome 1 0.50023164392355 1 0.999536712152901 hm5C_site_25499 DeepMRMD:1;iRNA_m5C:0.999536712152901 25500 chr3 47374712 47374712 1 + G T KIRP 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGATCTGCTG < 41bp 1 0.344745138251203 1 0.220090955495834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374712 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_24801 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25500 DeepMRMD:1;iRNA_m5C:0.999536712157815 25501 chr19 13002761 13002761 1 + C T KIRP 13002759 + 13002739 13002779 41 CTGCCAGGAGAGACTCATGCCTCGCATCCTGTTGGCCAATC CTGCCAGGAGAGACTCATGCCTTGCATCCTGTTGGCCAATC < 41bp 1 0.424320256799039 1 0.0716676115989685 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13002759 chr19:13002761 nonsynonymous SNV 0.838 5 23 hm5C_associated_SNPs_24802 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25501 DeepMRMD:1;iRNA_m5C:0.999536712157815 25502 chr22 30038229 30038229 1 + T C KIRP 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CCCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG < 41bp 1 0.690764824367775 1 0.506858289241791 experiment 0.61847035126445 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038229 synonymous SNV . 0 2 hm5C_associated_SNPs_24803 0 0 1 0 2 Ribosome 1 0.500231644358077 0.986283421516418 0.999536711283845 hm5C_site_25502 DeepMRMD:0.986283421516418;iRNA_m5C:0.999536711283845 25503 chr9 96079890 96079890 1 + C T KIRP 96079899 + 96079879 96079919 41 CGGAGCCGCCCCGACCCTGTCCGTGCCCACACCAGGTACTG CGGAGCCGCCCTGACCCTGTCCGTGCCCACACCAGGTACTG < 41bp 1 0.117138970285505 1 0.0827859938144684 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96079899 chr9:96079890 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_24804 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25503 DeepMRMD:1;iRNA_m5C:0.999536712157815 25504 chr17 65739904 65739904 1 + G A KIRP 65739907 + 65739887 65739927 41 TTGAAGTAAGTTTTCGGGAGCTACAGAAATTAAATCAAGAA TTGAAGTAAGTTTTCGGAAGCTACAGAAATTAAATCAAGAA < 41bp 1 0.5584722006584 1 0.513473331928253 experiment 0.8830555986832 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65739907 chr17:65739904 nonsynonymous SNV 0.997 2 18 hm5C_associated_SNPs_24805 0 0 1 0 1 Nucleus 1 0.500231643333439 0.973053336143494 0.999536713333121 hm5C_site_25504 DeepMRMD:0.973053336143494;iRNA_m5C:0.999536713333121 25505 chr22 30038228 30038228 1 + C A KIRP 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG ATCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG < 41bp 1 0.691698926372146 1 0.582861006259918 experiment 0.616602147255708 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038228 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_24806 0 0 1 0 2 Ribosome 1 0.500231669567466 0.834277987480164 0.999536660865068 hm5C_site_25505 DeepMRMD:0.834277987480164;iRNA_m5C:0.999536660865068 25506 chr19 45162149 45162149 1 + C T KIRP 45162132 + 45162112 45162152 41 TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCACTGT TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCATTGT < 41bp 1 0.612688881127462 1 0.296333312988281 experiment 0.774622237745076 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162132 chr19:45162149 synonymous SNV . 0 38 hm5C_associated_SNPs_24807 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_25506 DeepMRMD:1;iRNA_m5C:0.999536712157815 25507 chr19 45162149 45162149 1 + C T KIRP 45162140 + 45162120 45162160 41 TCCAAATGTTCCCGTGAGGTCCTTTGGCACTGTCATCTGTG TCCAAATGTTCCCGTGAGGTCCTTTGGCATTGTCATCTGTG < 41bp 1 0.0212745875314992 1 0.047462671995163 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162140 chr19:45162149 synonymous SNV . 0 30 hm5C_associated_SNPs_24808 0 0 1 0 1 Ribosome 1 0.500231643675632 1 0.999536712648736 hm5C_site_25507 DeepMRMD:1;iRNA_m5C:0.999536712648736 25508 chr9 139734263 139734263 1 + G A KIRP 139734265 + 139734245 139734285 41 AGACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGA AGACTGAAGAATGACTCGAACCTCTTCGGGCTGGGGCTGGA < 41bp 1 0.0703436877647022 1 0.054002434015274 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734265 chr9:139734263 nonsynonymous SNV 0.051 4 19 hm5C_associated_SNPs_24810 0 0 1 0 1 chromatin 1 0.500231434954592 1 0.999537130090817 hm5C_site_25508 DeepMRMD:1;iRNA_m5C:0.999537130090817 25509 chr9 139734263 139734263 1 + G A KIRP 139734266 + 139734246 139734286 41 GACTGAAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAG GACTGAAGAATGACTCGAACCTCTTCGGGCTGGGGCTGGAG < 41bp 1 0.154798200022533 1 0.171218246221542 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734266 chr9:139734263 nonsynonymous SNV 0.051 4 18 hm5C_associated_SNPs_24811 0 0 1 0 1 chromatin 1 0.500231643920761 1 0.999536712158477 hm5C_site_25509 DeepMRMD:1;iRNA_m5C:0.999536712158477 25510 chr9 139734263 139734263 1 + G A KIRP 139734271 + 139734251 139734291 41 AAGAATGACTCGGACCTCTTCGGGCTGGGGCTGGAGGAGGC AAGAATGACTCGAACCTCTTCGGGCTGGGGCTGGAGGAGGC < 41bp 1 0.620461602052279 1 0.862050175666809 experiment 0.759076795895441 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734271 chr9:139734263 nonsynonymous SNV 0.051 4 13 hm5C_associated_SNPs_24812 0 0 1 0 1 chromatin 1 0.500231643921116 0.275899648666382 0.999536712157767 hm5C_site_25510 DeepMRMD:0.275899648666382;iRNA_m5C:0.999536712157767 25511 chr2 97215160 97215160 1 + C A KIRP 97215177 + 97215157 97215197 41 ACGCCCATCGAGAGGGTGCCCCATCTCGGCTTCAAGCAGAG ACGACCATCGAGAGGGTGCCCCATCTCGGCTTCAAGCAGAG < 41bp 1 0.111143163963763 1 0.143096119165421 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID5A ENSG00000196843 CDS Human protein_coding chr2:97215177 chr2:97215160 nonsynonymous SNV 0.994 4 4 hm5C_associated_SNPs_24813 0 0 0 0 0 Cytosol 1 0.500231643926426 1 0.999536712147149 hm5C_site_25511 DeepMRMD:1;iRNA_m5C:0.999536712147149 25512 chr11 61111339 61111339 1 + A G KIRP 61111346 + 61111326 61111366 41 AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGGCTG AGATGCTGAAACCGCTGCAGCAGCCTGGCCTAACGTGGCTG < 41bp 1 0.293057303136674 1 0.367790877819061 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61111346 chr11:61111339 nonsynonymous SNV 0.720 0 14 hm5C_associated_SNPs_24814 0 0 1 0 1 Cytosol 1 0.500231637556571 1 0.999536724886858 hm5C_site_25512 DeepMRMD:1;iRNA_m5C:0.999536724886858 25513 chr16 89627425 89627425 1 + C T KIRP 89627445 + 89627425 89627465 41 CGGCGCGTGGCCACGTGGTTCAACCAGCCGGCCCGTAAGAT TGGCGCGTGGCCACGTGGTTCAACCAGCCGGCCCGTAAGAT < 41bp 1 0.328800986953501 1 0.0766088664531708 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627445 chr16:89627425 nonsynonymous SNV 0.992 3 1 hm5C_associated_SNPs_24815 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25513 DeepMRMD:1;iRNA_m5C:0.999536712157815 25514 chr19 49714007 49714007 1 + G T KIRP 49713999 + 49713979 49714019 41 CTAAGGAAGCCGAGCGGAAGCTGCTAACGTGGGAATCGGTG CTAAGGAAGCCGAGCGGAAGCTGCTAACTTGGGAATCGGTG < 41bp 1 0.397956753529682 1 0.29239284992218 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49713999 chr19:49714007 synonymous SNV . 0 29 hm5C_associated_SNPs_24816 0 0 0 0 2 chromatin 1 0.500231643920971 1 0.999536712158058 hm5C_site_25514 DeepMRMD:1;iRNA_m5C:0.999536712158058 25515 chr1 957703 957703 1 + C A KIRP 957712 + 957692 957732 41 AACCAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTGAA AACCAGGTGTCAACTGGGGACACCAGGATCTTCTTTGTGAA < 41bp 1 0.452179543575352 1 0.283409148454666 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957712 chr1:957703 synonymous SNV . 0 12 hm5C_associated_SNPs_24817 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921133 1 0.999536712157733 hm5C_site_25515 DeepMRMD:1;iRNA_m5C:0.999536712157733 25516 chr1 957703 957703 1 + C A KIRP 957715 + 957695 957735 41 CAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTGAACCC CAGGTGTCAACTGGGGACACCAGGATCTTCTTTGTGAACCC < 41bp 1 0.593583622032721 1 0.523652374744415 experiment 0.812832755934558 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957715 chr1:957703 synonymous SNV . 0 9 hm5C_associated_SNPs_24818 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.95269525051117 0.999536712157815 hm5C_site_25516 DeepMRMD:0.95269525051117;iRNA_m5C:0.999536712157815 25517 chr1 223900487 223900487 1 + C A KIRP 223900495 + 223900475 223900515 41 CTCTTCCAGGACCCGTCCTTCCCGGCCATCCCCTCGGCCCT CTCTTCCAGGACACGTCCTTCCCGGCCATCCCCTCGGCCCT < 41bp 1 0.510233827293887 1 0.200605422258377 experiment 0.979532345412225 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223900495 chr1:223900487 nonsynonymous SNV 0.122 1 13 hm5C_associated_SNPs_24819 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_25517 DeepMRMD:1;iRNA_m5C:0.999536712157817 25518 chr9 131386741 131386741 1 + G A KIRP 131386723 + 131386703 131386743 41 CTGGATGAGAACTCGGCCTTCCTTCAGTTCAACTGGAAGGC CTGGATGAGAACTCGGCCTTCCTTCAGTTCAACTGGAAAGC < 41bp 1 0.0137992253841971 1 0.0473178029060364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131386723 chr9:131386741 synonymous SNV . 0 39 hm5C_associated_SNPs_24820 0 0 1 0 1 Nucleus 1 0.500231643921555 1 0.999536712156891 hm5C_site_25518 DeepMRMD:1;iRNA_m5C:0.999536712156891 25519 chr6 31593324 31593324 1 + G A KIRP 31593332 + 31593312 31593352 41 GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC GTCATGATCCCCAGGGTGGGCTACAGCCTTCAGGCCCACCC < 41bp 1 0.613246600207338 1 0.440519005060196 experiment 0.773506799585324 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593332 chr6:31593324 nonsynonymous SNV 0.977 2 13 hm5C_associated_SNPs_24821 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25519 DeepMRMD:1;iRNA_m5C:0.999536712157815 25520 chr2 235949726 235949726 1 + C G KIRP 235949741 + 235949721 235949761 41 ACATCCCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAAC ACATCGCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAAC < 41bp 1 0.212557586294456 1 0.244700580835342 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235949741 chr2:235949726 nonsynonymous SNV 0.994 5 6 hm5C_associated_SNPs_24822 0 0 1 0 0 cytosol 1 0.500231643928596 1 0.999536712142808 hm5C_site_25520 DeepMRMD:1;iRNA_m5C:0.999536712142808 25521 chr2 235949726 235949726 1 + C G KIRP 235949744 + 235949724 235949764 41 TCCCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAACTCA TCGCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAACTCA < 41bp 1 0.0160637786094412 1 0.0533238053321838 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235949744 chr2:235949726 nonsynonymous SNV 0.994 5 3 hm5C_associated_SNPs_24823 0 0 1 0 0 cytosol 1 0.500231644408847 1 0.999536711182306 hm5C_site_25521 DeepMRMD:1;iRNA_m5C:0.999536711182306 25522 chr2 235949726 235949726 1 + C G KIRP 235949745 + 235949725 235949765 41 CCCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAACTCAA CGCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAACTCAA < 41bp 1 0.0196982057404072 1 0.106580913066864 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235949745 chr2:235949726 nonsynonymous SNV 0.994 5 2 hm5C_associated_SNPs_24824 0 0 1 0 0 cytosol 1 0.500231643935711 1 0.999536712128579 hm5C_site_25522 DeepMRMD:1;iRNA_m5C:0.999536712128579 25523 chr17 57728648 57728648 1 + G T KIRP 57728643 + 57728623 57728663 41 AGTGGATGTCTTCTTTCCTCCAGAAGCACAAAATGATTTTC AGTGGATGTCTTCTTTCCTCCAGAATCACAAAATGATTTTC < 41bp 1 0.474788196486076 1 0.742417931556702 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57728643 chr17:57728648 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_24826 0 0 1 0 2 Nucleus 1 0.500231642506373 0.515164136886596 0.999536714987254 hm5C_site_25523 DeepMRMD:0.515164136886596;iRNA_m5C:0.999536714987254 25524 chr3 49737921 49737921 1 + A G KIRP 49737932 + 49737912 49737952 41 AGGTACAAGATTGCCTCAAGCAGTTGATGATGTCTCTGCTT AGGTACAAGGTTGCCTCAAGCAGTTGATGATGTCTCTGCTT < 41bp 1 0.308615236738303 1 0.493201732635498 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49737932 chr3:49737921 nonsynonymous SNV 0.994 0 10 hm5C_associated_SNPs_24828 0 0 1 0 2 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_25524 DeepMRMD:1;iRNA_m5C:0.999536712157812 25525 chr16 70163023 70163023 1 + A T KIRP 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTTGCCCTGGCAAGTGCTGCCTCCCAAATTGGTGAGCAGGT < 41bp 1 0.177345770065868 1 0.212012410163879 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70163023 nonsynonymous SNV 0.960 1 29 hm5C_associated_SNPs_24829 0 0 0 0 1 Nucleus 1 0.50023164392106 1 0.999536712157881 hm5C_site_25525 DeepMRMD:1;iRNA_m5C:0.999536712157881 25526 chr19 34895341 34895341 1 + G T KIRP 34895331 + 34895311 34895351 41 GTTTTCACCTGGTCGCCCGGCGGCCATGGCGGCCGTTCTGA GTTTTCACCTGGTCGCCCGGCGGCCATGGCTGCCGTTCTGA < 41bp 1 0.580364140425344 1 0.396657824516296 experiment 0.839271719149312 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD2L ENSG00000126249 CDS Human protein_coding chr19:34895331 chr19:34895341 synonymous SNV . 0 31 hm5C_associated_SNPs_24830 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25526 DeepMRMD:1;iRNA_m5C:0.999536712157815 25527 chr1 112999438 112999438 1 + G T KIRP 112999436 + 112999416 112999456 41 TAAGCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACC TAAGCGTTTATTGGGGTCATCATCTAGCAGCCCTGGCTACC < 41bp 1 0.192137290749307 1 0.128296196460724 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999436 chr1:112999438 nonsynonymous SNV 0.915 1 23 hm5C_associated_SNPs_24831 0 0 0 0 0 Ribosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_25527 DeepMRMD:1;iRNA_m5C:0.999536712157806 25528 chr1 112999438 112999438 1 + G T KIRP 112999439 + 112999419 112999459 41 GCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGT GCGTTTATTGGGGTCATCATCTAGCAGCCCTGGCTACCAGT < 41bp 1 0.636956315609441 1 0.729804158210754 experiment 0.726087368781118 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999439 chr1:112999438 nonsynonymous SNV 0.915 1 20 hm5C_associated_SNPs_24832 0 0 0 0 0 Ribosome 1 0.500231643923355 0.540391683578492 0.99953671215329 hm5C_site_25528 DeepMRMD:0.540391683578492;iRNA_m5C:0.99953671215329 25529 chr1 112999438 112999438 1 + G T KIRP 112999446 + 112999426 112999466 41 TTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTA TTGGGGTCATCATCTAGCAGCCCTGGCTACCAGTCATCGTA < 41bp 1 0.119848455166116 1 0.0545172393321991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999446 chr1:112999438 nonsynonymous SNV 0.915 1 13 hm5C_associated_SNPs_24833 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25529 DeepMRMD:1;iRNA_m5C:0.999536712157815 25530 chr1 112999438 112999438 1 + G T KIRP 112999447 + 112999427 112999467 41 TGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTAC TGGGGTCATCATCTAGCAGCCCTGGCTACCAGTCATCGTAC < 41bp 1 0.277644010256004 1 0.0830082595348358 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999447 chr1:112999438 nonsynonymous SNV 0.915 1 12 hm5C_associated_SNPs_24834 0 0 0 0 0 Ribosome 1 0.500231643947678 1 0.999536712104644 hm5C_site_25530 DeepMRMD:1;iRNA_m5C:0.999536712104644 25531 chr1 112999438 112999438 1 + G T KIRP 112999452 + 112999432 112999472 41 TCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGT TCATCATCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGT < 41bp 1 0.126123757994975 1 0.0186478495597839 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999452 chr1:112999438 nonsynonymous SNV 0.915 1 7 hm5C_associated_SNPs_24835 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25531 DeepMRMD:1;iRNA_m5C:0.999536712157815 25532 chr1 112999438 112999438 1 + G T KIRP 112999455 + 112999435 112999475 41 TCAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGG TCATCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGG < 41bp 1 0.147033363529516 1 0.0983735322952271 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999455 chr1:112999438 nonsynonymous SNV 0.915 1 4 hm5C_associated_SNPs_24836 0 0 0 0 0 Ribosome 1 0.500232116627693 1 0.999535766744614 hm5C_site_25532 DeepMRMD:1;iRNA_m5C:0.999535766744614 25533 chr1 112999438 112999438 1 + G T KIRP 112999456 + 112999436 112999476 41 CAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGG CATCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGG < 41bp 1 0.188003299283819 1 0.572126746177673 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999456 chr1:112999438 nonsynonymous SNV 0.915 1 3 hm5C_associated_SNPs_24837 0 0 0 0 0 Ribosome 1 0.500231643921092 0.855746507644654 0.999536712157815 hm5C_site_25533 DeepMRMD:0.855746507644654;iRNA_m5C:0.999536712157815 25534 chr17 45682709 45682709 1 + G A KIRP 45682702 + 45682682 45682722 41 GTTTTTTCCTATCCCAGGCTCGAGCTGGAATCATTAGCACT GTTTTTTCCTATCCCAGGCTCGAGCTGAAATCATTAGCACT < 41bp 1 0.189459571370427 1 0.628718912601471 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45682702 chr17:45682709 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_24838 0 0 1 0 1 Nucleus 1 0.500231655244075 0.742562174797058 0.999536689511851 hm5C_site_25534 DeepMRMD:0.742562174797058;iRNA_m5C:0.999536689511851 25535 chr17 45682709 45682709 1 + G A KIRP 45682706 + 45682686 45682726 41 TTTCCTATCCCAGGCTCGAGCTGGAATCATTAGCACTGTAG TTTCCTATCCCAGGCTCGAGCTGAAATCATTAGCACTGTAG < 41bp 1 0.558938439360815 1 0.331201255321503 experiment 0.882123121278371 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45682706 chr17:45682709 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_24839 0 0 1 0 1 Nucleus 1 0.500231651245885 1 0.99953669750823 hm5C_site_25535 DeepMRMD:1;iRNA_m5C:0.99953669750823 25536 chr10 51579175 51579175 1 + A C KIRP 51579188 + 51579168 51579208 41 CAGCTCCAGTAATAGAGAACCCCTTTTGAGGTGTAGTGATG CAGCTCCCGTAATAGAGAACCCCTTTTGAGGTGTAGTGATG < 41bp 1 0.103059746067022 1 0.0486731231212616 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51579188 chr10:51579175 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_24840 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25536 DeepMRMD:1;iRNA_m5C:0.999536712157815 25537 chr10 51579175 51579175 1 + A C KIRP 51579190 + 51579170 51579210 41 GCTCCAGTAATAGAGAACCCCTTTTGAGGTGTAGTGATGCA GCTCCCGTAATAGAGAACCCCTTTTGAGGTGTAGTGATGCA < 41bp 1 0.0986403670250866 1 0.0282219052314758 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCOA4 ENSG00000138293 CDS Human other chr10:51579190 chr10:51579175 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_24841 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25537 DeepMRMD:1;iRNA_m5C:0.999536712157815 25538 chr9 112705604 112705604 1 + A G KIRP 112705590 + 112705570 112705610 41 TGAGCTTGTGTCCGGGAGGCCGGTCTCAGACACCACAGAGC TGAGCTTGTGTCCGGGAGGCCGGTCTCAGACACCGCAGAGC < 41bp 1 0.115673660490744 1 0.395631492137909 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALM2 ENSG00000157654;ENSG00000243444 CDS Human other chr9:112705590 chr9:112705604 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_24842 0 0 1 0 1 exosome 1 0.500232599241727 1 0.999534801516547 hm5C_site_25538 DeepMRMD:1;iRNA_m5C:0.999534801516547 25539 chr5 54635905 54635905 1 + A G KIRP 54635889 + 54635869 54635909 41 CAGCGTGTAATATTTACCAGCCCAATTAAGGCTCTGAGTAA CAGCGTGTAATATTTACCAGCCCAATTAAGGCTCTGGGTAA < 41bp 1 0.376199141976571 1 0.247075617313385 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54635889 chr5:54635905 nonsynonymous SNV 0.996 4 37 hm5C_associated_SNPs_24843 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25539 DeepMRMD:1;iRNA_m5C:0.999536712157815 25540 chr1 40724033 40724033 1 + G C KIRP 40724018 + 40723998 40724038 41 ATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCT ATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTCTATCT < 41bp 1 0.239232011907652 1 0.0194345712661743 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40724018 chr1:40724033 synonymous SNV . 0 36 hm5C_associated_SNPs_24844 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921088 1 0.999536712157823 hm5C_site_25540 DeepMRMD:1;iRNA_m5C:0.999536712157823 25541 chr1 155532204 155532204 1 + A T KIRP 155532223 - 155532203 155532243 41 TGCTGCTGCCGCCGCCGCCGCCGCCGCTCCCGCCGCCATTT TGCTGCTGCCGCCGCCGCCGCCGCCGCTCCCGCCGCCATAT < 41bp 1 0.26660190649625 1 0.261716455221176 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ASH1L-AS1 ENSG00000235919 ncRNA_exonic Human antisense chr1:155532223 chr1:155532204 . . 0 40 hm5C_associated_SNPs_24846 0 0 1 0 0 unknown 1 0.500231643998496 1 0.999536712003009 hm5C_site_25541 DeepMRMD:1;iRNA_m5C:0.999536712003009 25542 chr12 57624649 57624649 1 + C G KIRP 57624668 + 57624648 57624688 41 CCAGACTCAGACTGGGGAAGCAAACAGGGGCTGGACAGGCC CGAGACTCAGACTGGGGAAGCAAACAGGGGCTGGACAGGCC < 41bp 1 0.387130128775254 1 0.201165169477463 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57624668 chr12:57624649 nonsynonymous SNV 0.986 0 2 hm5C_associated_SNPs_24847 0 0 1 0 1 Cytosol 1 0.500231643921256 1 0.999536712157488 hm5C_site_25542 DeepMRMD:1;iRNA_m5C:0.999536712157488 25543 chr1 10328310 10328310 1 + T C KIRP 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATAATGAGACCAACCTTCCCACTGAGAAGGTAGG < 41bp 1 0.00201730119774735 1 0.0846464335918427 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328310 nonsynonymous SNV 0.975 3 25 hm5C_associated_SNPs_24848 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25543 DeepMRMD:1;iRNA_m5C:0.999536712157815 25544 chr7 104750955 104750955 1 + G T KIRP 104750943 + 104750923 104750963 41 GGGGGAGAATCACCATGTGTCTCATGTTCACCGAGTCATGT GGGGGAGAATCACCATGTGTCTCATGTTCACCTAGTCATGT < 41bp 1 0.331206192811925 1 0.0166846215724945 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2E ENSG00000005483 CDS Human protein_coding chr7:104750943 chr7:104750955 synonymous SNV . 0 33 hm5C_associated_SNPs_24849 0 0 1 0 2 Cytosol 1 0.502190160216681 1 0.995619679566639 hm5C_site_25544 DeepMRMD:1;iRNA_m5C:0.995619679566639 25545 chr16 1370453 1370453 1 + A G KIRP 1370441 + 1370421 1370461 41 TTTTTGTCTCTGGCACAGATCCTATTAGGAATACAGGAACT TTTTTGTCTCTGGCACAGATCCTATTAGGAATGCAGGAACT < 41bp 1 0.0417359821600208 1 0.109252274036407 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2I ENSG00000103275 CDS Human protein_coding chr16:1370441 chr16:1370453 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_24850 0 0 1 0 2 Ribosome 1 0.500231655285696 1 0.999536689428609 hm5C_site_25545 DeepMRMD:1;iRNA_m5C:0.999536689428609 25546 chr11 48142728 48142728 1 + T G KIRP 48142738 + 48142718 48142758 41 CATCACAGGCTTACGTCCAGCGACTTCATATGTATTCTCCA CATCACAGGCGTACGTCCAGCGACTTCATATGTATTCTCCA < 41bp 1 0.174488341106393 1 0.0745907425880432 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48142738 chr11:48142728 nonsynonymous SNV 0.175 4 11 hm5C_associated_SNPs_24851 0 0 0 0 1 Endoplasmic reticulum 1 0.500209487194007 1 0.999581025611986 hm5C_site_25546 DeepMRMD:1;iRNA_m5C:0.999581025611986 25547 chr1 26150129 26150129 1 + C T KIRP 26150131 + 26150111 26150151 41 GCTGTCTCCGTCTCTTTGCTCCAGACCATCCCAATCTGGCA GCTGTCTCCGTCTCTTTGTTCCAGACCATCCCAATCTGGCA < 41bp 1 0.435188665669279 1 0.760464072227478 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTFR1L ENSG00000117640 UTR5 Human protein_coding chr1:26150131 chr1:26150129 . . 0 19 hm5C_associated_SNPs_24852 0 0 1 0 1 Ribosome 1 0.500231643921093 0.479071855545044 0.999536712157815 hm5C_site_25547 DeepMRMD:0.479071855545044;iRNA_m5C:0.999536712157815 25548 chr6 43155541 43155541 1 + A G KIRP 43155540 + 43155520 43155560 41 CTCAGTAGTCGATTTGAGGGCAGCACTCTCAATGACCTGCT CTCAGTAGTCGATTTGAGGGCGGCACTCTCAATGACCTGCT < 41bp 1 0.593510150456088 1 0.149858385324478 experiment 0.812979699087823 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43155540 chr6:43155541 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_24853 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_25548 DeepMRMD:1;iRNA_m5C:0.999536712157815 25549 chr14 102478240 102478240 1 + T C KIRP 102478245 + 102478225 102478265 41 ATCAGATCACCCAGATCAATCATGGCCTGATGATGGTGGGG ATCAGATCACCCAGACCAATCATGGCCTGATGATGGTGGGG < 41bp 1 0.180488733474168 1 0.391990423202515 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478245 chr14:102478240 nonsynonymous SNV 0.998 2 16 hm5C_associated_SNPs_24854 0 0 1 0 1 Cytosol 1 0.500231643927333 1 0.999536712145333 hm5C_site_25549 DeepMRMD:1;iRNA_m5C:0.999536712145333 25550 chr14 102478240 102478240 1 + T C KIRP 102478250 + 102478230 102478270 41 ATCACCCAGATCAATCATGGCCTGATGATGGTGGGGCCCTC ATCACCCAGACCAATCATGGCCTGATGATGGTGGGGCCCTC < 41bp 1 0.100599924538722 1 0.0856868326663971 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478250 chr14:102478240 nonsynonymous SNV 0.998 2 11 hm5C_associated_SNPs_24855 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25550 DeepMRMD:1;iRNA_m5C:0.999536712157815 25551 chr2 233671361 233671361 1 + T A KIRP 233671347 + 233671327 233671367 41 GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATG GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCACATATG < 41bp 1 0.104126312421811 1 0.0478638708591461 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671347 chr2:233671361 synonymous SNV . 0 35 hm5C_associated_SNPs_24856 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25551 DeepMRMD:1;iRNA_m5C:0.999536712157815 25552 chr2 233671361 233671361 1 + T A KIRP 233671348 + 233671328 233671368 41 GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGG GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCACATATGG < 41bp 1 0.163366301218404 1 0.166114836931229 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671348 chr2:233671361 synonymous SNV . 0 34 hm5C_associated_SNPs_24857 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25552 DeepMRMD:1;iRNA_m5C:0.999536712157815 25553 chr2 233671361 233671361 1 + T A KIRP 233671351 + 233671331 233671371 41 TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAA TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCACATATGGTAA < 41bp 1 0.11053614073646 1 0.226857453584671 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671351 chr2:233671361 synonymous SNV . 0 31 hm5C_associated_SNPs_24858 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25553 DeepMRMD:1;iRNA_m5C:0.999536712157815 25554 chr2 233671361 233671361 1 + T A KIRP 233671354 + 233671334 233671374 41 CTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTA CTTTTCTCCAGGTCCAGCTCCCCCTCCACATATGGTAAGTA < 41bp 1 0.0516814948999747 1 0.0693139731884003 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671354 chr2:233671361 synonymous SNV . 0 28 hm5C_associated_SNPs_24859 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25554 DeepMRMD:1;iRNA_m5C:0.999536712157815 25555 chr2 233671361 233671361 1 + T A KIRP 233671355 + 233671335 233671375 41 TTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTAC TTTTCTCCAGGTCCAGCTCCCCCTCCACATATGGTAAGTAC < 41bp 1 0.0459077844229566 1 0.124967694282532 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671355 chr2:233671361 synonymous SNV . 0 27 hm5C_associated_SNPs_24860 0 0 1 0 1 Nucleus 1 0.500231643921036 1 0.999536712157928 hm5C_site_25555 DeepMRMD:1;iRNA_m5C:0.999536712157928 25556 chr2 233671361 233671361 1 + T A KIRP 233671356 + 233671336 233671376 41 TTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACC TTTCTCCAGGTCCAGCTCCCCCTCCACATATGGTAAGTACC < 41bp 1 0.0222488951526777 1 0.169059693813324 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671356 chr2:233671361 synonymous SNV . 0 26 hm5C_associated_SNPs_24861 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25556 DeepMRMD:1;iRNA_m5C:0.999536712157815 25557 chr2 233671361 233671361 1 + T A KIRP 233671357 + 233671337 233671377 41 TTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACCT TTCTCCAGGTCCAGCTCCCCCTCCACATATGGTAAGTACCT < 41bp 1 0.530888348869061 1 0.85325825214386 experiment 0.938223302261878 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671357 chr2:233671361 synonymous SNV . 0 25 hm5C_associated_SNPs_24862 0 0 1 0 1 Nucleus 1 0.500231643921093 0.29348349571228 0.999536712157815 hm5C_site_25557 DeepMRMD:0.29348349571228;iRNA_m5C:0.999536712157815 25558 chr9 132623219 132623219 1 + T C KIRP 132623233 + 132623213 132623253 41 CAGGACTCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC CAGGACCCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC < 41bp 1 0.0232843034182388 1 0.184869199991226 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132623233 chr9:132623219 nonsynonymous SNV 0.972 0 7 hm5C_associated_SNPs_24863 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_25558 DeepMRMD:1;iRNA_m5C:0.999536712157815 25559 chr10 287963 287963 1 + A G KIRP 287976 + 287956 287996 41 TCCAGATACCTAATCATGAGCTGGTTTGGGCTAAAATGAAA TCCAGATGCCTAATCATGAGCTGGTTTGGGCTAAAATGAAA < 41bp 1 0.496915117126675 1 0.133112162351608 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:287976 chr10:287963 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_24864 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921096 1 0.999536712157807 hm5C_site_25559 DeepMRMD:1;iRNA_m5C:0.999536712157807 25560 chr20 49576203 49576203 1 + T G KIRP 49576184 + 49576164 49576204 41 AAATCGCTGCGGGTCTGGGCCCCTCTTACAGTGGCAGCTTG AAATCGCTGCGGGTCTGGGCCCCTCTTACAGTGGCAGCTGG < 41bp 1 0.13912077593509 1 0.0974138975143433 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOCS3 ENSG00000124217 CDS Human protein_coding chr20:49576184 chr20:49576203 nonsynonymous SNV 0.713 3 40 hm5C_associated_SNPs_24865 0 0 1 0 0 Nucleus 1 0.500231643922633 1 0.999536712154734 hm5C_site_25560 DeepMRMD:1;iRNA_m5C:0.999536712154734 25561 chr1 145761288 145761288 1 + T C KIRP 145761280 + 145761260 145761300 41 CTTCTCTGGAAGTCTCAAGTCCACCAGATACTACAGAGGAA CTTCTCTGGAAGTCTCAAGTCCACCAGACACTACAGAGGAA < 41bp 1 0.0636862305564641 1 0.100508332252502 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDZK1 ENSG00000174827 CDS Human protein_coding chr1:145761280 chr1:145761288 synonymous SNV . 0 29 hm5C_associated_SNPs_24866 0 0 1 0 0 Nucleus 1 0.500233578769208 1 0.999532842461583 hm5C_site_25561 DeepMRMD:1;iRNA_m5C:0.999532842461583 25562 chr6 53660212 53660212 1 + A T KIRP 53660192 + 53660172 53660212 41 GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGA GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGT < 41bp 1 0.483786046599172 1 0.333530843257904 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660192 chr6:53660212 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_24867 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25562 DeepMRMD:1;iRNA_m5C:0.999536712157815 25563 chr5 10411600 10411600 1 + G A KIRP 10411602 + 10411582 10411622 41 CCATACTCCAGCAGGGAGGGCCTGTTGGCTTTCAGCCTTAC CCATACTCCAGCAGGGAGAGCCTGTTGGCTTTCAGCCTTAC < 41bp 1 0.107683609276341 1 0.0536005795001984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10411602 chr5:10411600 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_24869 0 0 1 0 0 Nucleus 1 0.500231643938157 1 0.999536712123685 hm5C_site_25563 DeepMRMD:1;iRNA_m5C:0.999536712123685 25564 chr13 61034625 61034625 1 + G A KIRP 61034613 + 61034593 61034633 41 CACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATA CACCAAGGATGCTGCGATTACAGATGACTGATAGTCATATA < 41bp 1 0.680820911071112 1 0.582618713378906 experiment 0.638358177857775 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034613 chr13:61034625 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_24871 0 0 1 0 1 Cytosol 1 0.500231643921257 0.834762573242188 0.999536712157487 hm5C_site_25564 DeepMRMD:0.834762573242188;iRNA_m5C:0.999536712157487 25565 chr10 104158555 104158555 1 + G A KIRP 104158544 + 104158524 104158564 41 GAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGTGGCT GAAGGCCTTGCCCACCTTCTCCCAGCCCTTCAGGGGTGGCT < 41bp 1 0.284519589524098 1 0.396022140979767 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104158544 chr10:104158555 nonsynonymous SNV 0.988 4 32 hm5C_associated_SNPs_24872 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_25565 DeepMRMD:1;iRNA_m5C:0.999536712157815 25566 chr7 55459595 55459595 1 + G C KIRP 55459578 + 55459558 55459598 41 AAGACAGCTGATCCCCATGACTGCTCTGCTTATACTGGCTG AAGACAGCTGATCCCCATGACTGCTCTGCTTATACTGCCTG < 41bp 1 0.336375805148305 1 0.0402646958827972 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55459578 chr7:55459595 nonsynonymous SNV 0.996 5 38 hm5C_associated_SNPs_24873 0 0 1 0 1 Ribosome 1 0.500231143599089 1 0.999537712801821 hm5C_site_25566 DeepMRMD:1;iRNA_m5C:0.999537712801821 25567 chr12 112229114 112229114 1 + G A KIRP 112229119 + 112229099 112229139 41 TTTGCTCACAGGCTGGCTTTCCCCCTGGTGTGGTCAACATT TTTGCTCACAGGCTGACTTTCCCCCTGGTGTGGTCAACATT < 41bp 1 0.18153246562419 1 0.0423107743263245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229119 chr12:112229114 nonsynonymous SNV 0.992 4 16 hm5C_associated_SNPs_24874 0 0 1 0 1 chromatin 1 0.50023164392094 1 0.999536712158119 hm5C_site_25567 DeepMRMD:1;iRNA_m5C:0.999536712158119 25568 chr11 64802325 64802325 1 + T G KIRP 64802321 + 64802301 64802341 41 TTGTCCTGGGGGCCGTAGGCCGGTTTGAAGCCTCAGTGATC TTGTCCTGGGGGCCGTAGGCCGGTGTGAAGCCTCAGTGATC < 41bp 1 0.578016299391378 1 0.697668015956879 experiment 0.843967401217245 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802321 chr11:64802325 nonsynonymous SNV 0.917 4 25 hm5C_associated_SNPs_24875 0 0 1 0 1 Ribosome 1 0.500231643921092 0.604663968086242 0.999536712157815 hm5C_site_25568 DeepMRMD:0.604663968086242;iRNA_m5C:0.999536712157815 25569 chr11 45926284 45926284 1 + C T KIRP 45926276 + 45926256 45926296 41 TTGTCACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGC TTGTCACCTGTAGATTGCCACCACCCGCTGGCTCACCGTGC < 41bp 1 0.0388507299005687 1 0.10144031047821 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926276 chr11:45926284 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_24876 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643964143 1 0.999536712071715 hm5C_site_25569 DeepMRMD:1;iRNA_m5C:0.999536712071715 25570 chr11 45926284 45926284 1 + C T KIRP 45926280 + 45926260 45926300 41 CACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGCACTT CACCTGTAGATTGCCACCACCCGCTGGCTCACCGTGCACTT < 41bp 1 0.152464211334514 1 0.023401290178299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926280 chr11:45926284 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_24877 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643678268 1 0.999536712643465 hm5C_site_25570 DeepMRMD:1;iRNA_m5C:0.999536712643465 25571 chr11 45926284 45926284 1 + C T KIRP 45926291 + 45926271 45926311 41 TGCCACCACCCGCCGGCTCACCGTGCACTTTAACCCGCCCT TGCCACCACCCGCTGGCTCACCGTGCACTTTAACCCGCCCT < 41bp 1 0.129670715523448 1 0.529448986053467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926291 chr11:45926284 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_24878 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921283 0.941102027893066 0.999536712157433 hm5C_site_25571 DeepMRMD:0.941102027893066;iRNA_m5C:0.999536712157433 25572 chr12 57922959 57922959 1 + C T KIRP 57922978 + 57922958 57922998 41 CCTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAG CTTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAG < 41bp 1 0.068610658030982 1 0.122379571199417 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57922978 chr12:57922959 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_24879 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_25572 DeepMRMD:1;iRNA_m5C:0.999536712157815 25573 chr6 30857025 30857025 1 + G A KIRP 30857005 + 30856985 30857025 41 GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCGG GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCGA < 41bp 1 0.278099681720829 1 0.333623290061951 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30857005 chr6:30857025 nonsynonymous SNV 0.968 4 41 hm5C_associated_SNPs_24880 0 0 1 0 1 Ribosome 1 0.500231643921791 1 0.999536712156418 hm5C_site_25573 DeepMRMD:1;iRNA_m5C:0.999536712156418 25574 chr7 149422542 149422542 1 + G C KIRP 149422538 + 149422518 149422558 41 CCAGCCAGGAGACTCTAGGTCTCAGAAGCCTGAACTGCAAC CCAGCCAGGAGACTCTAGGTCTCACAAGCCTGAACTGCAAC < 41bp 1 0.143542407147195 1 0.049005389213562 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149422538 chr7:149422542 nonsynonymous SNV 0.015 1 25 hm5C_associated_SNPs_24881 0 0 0 0 1 Cytosol 1 0.500231643011885 1 0.999536713976231 hm5C_site_25574 DeepMRMD:1;iRNA_m5C:0.999536713976231 25575 chr6 32947799 32947799 1 + C G KIRP 32947785 + 32947765 32947805 41 ATAATCCAAGCCAGGGAGCCCTCTTTACGTGATTCAAACCC ATAATCCAAGCCAGGGAGCCCTCTTTACGTGATTGAAACCC < 41bp 1 0.224339114176021 1 0.3067227602005 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32947785 chr6:32947799 stopgain 1.000 1 35 hm5C_associated_SNPs_24882 0 0 1 0 0 Cytosol 1 0.500231643920682 1 0.999536712158636 hm5C_site_25575 DeepMRMD:1;iRNA_m5C:0.999536712158636 25576 chr22 46712115 46712115 1 + C T KIRP 46712102 + 46712082 46712122 41 TTTCTGAGCTGGCAGCGGAGCAGCTCACGGCACCCCCCTCA TTTCTGAGCTGGCAGCGGAGCAGCTCACGGCACTCCCCTCA < 41bp 1 0.608384207291678 1 0.349583625793457 experiment 0.783231585416645 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46712102 chr22:46712115 nonsynonymous SNV 0.002 0 34 hm5C_associated_SNPs_24883 0 0 1 0 0 Ribosome 1 0.500231643928955 1 0.999536712142089 hm5C_site_25576 DeepMRMD:1;iRNA_m5C:0.999536712142089 25577 chr1 39910503 39910503 1 + G C KIRP 39910486 + 39910466 39910506 41 CAGAAGTGGCATGTGGTCAGCAGTAAGATGGAAGAAAGAAA CAGAAGTGGCATGTGGTCAGCAGTAAGATGGAAGAAACAAA < 41bp 1 0.114808705581961 1 0.415344715118408 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910486 chr1:39910503 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_24884 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643903709 1 0.999536712192583 hm5C_site_25577 DeepMRMD:1;iRNA_m5C:0.999536712192583 25578 chr2 45879507 45879507 1 + G C KIRP 45879512 + 45879492 45879532 41 CACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTG CACGATGCCCCCATACGCTACGACGACTTCGTGGCCAACTG < 41bp 1 0.258308545277167 1 0.128979802131653 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCE ENSG00000171132 CDS Human protein_coding chr2:45879512 chr2:45879507 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_24885 0 0 1 0 1 chromatin 1 0.500231711658138 1 0.999536576683725 hm5C_site_25578 DeepMRMD:1;iRNA_m5C:0.999536576683725 25579 chr17 4800540 4800540 1 + T G KIRP 4800528 + 4800508 4800548 41 GCCTCAGTCCGCTCTGGGGGCAGCAGCCAAGTTTACTTCAT GCCTCAGTCCGCTCTGGGGGCAGCAGCCAAGTGTACTTCAT < 41bp 1 0.526533964273303 1 0.297524511814117 experiment 0.946932071453393 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800528 chr17:4800540 synonymous SNV . 0 33 hm5C_associated_SNPs_24886 0 0 1 0 1 Ribosome 1 0.500231644025291 1 0.999536711949419 hm5C_site_25579 DeepMRMD:1;iRNA_m5C:0.999536711949419 25580 chr17 4800540 4800540 1 + T G KIRP 4800531 + 4800511 4800551 41 TCAGTCCGCTCTGGGGGCAGCAGCCAAGTTTACTTCATGAC TCAGTCCGCTCTGGGGGCAGCAGCCAAGTGTACTTCATGAC < 41bp 1 0.150234892997619 1 0.343157529830933 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4800531 chr17:4800540 synonymous SNV . 0 30 hm5C_associated_SNPs_24887 0 0 1 0 1 Ribosome 1 0.500231643923857 1 0.999536712152286 hm5C_site_25580 DeepMRMD:1;iRNA_m5C:0.999536712152286 25581 chr17 694912 694912 1 + A T KIRP 694913 + 694893 694933 41 CGGGTCTATGTGGCTGACAACTGTGGCCTTTATGCCCAGGC CGGGTCTATGTGGCTGACATCTGTGGCCTTTATGCCCAGGC < 41bp 1 0.467692227197348 1 0.530618906021118 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRM3 ENSG00000171861 CDS Human protein_coding chr17:694913 chr17:694912 nonsynonymous SNV 0.996 4 20 hm5C_associated_SNPs_24888 0 0 1 0 0 chromatin 1 0.500231639059913 0.938762187957764 0.999536721880173 hm5C_site_25581 DeepMRMD:0.938762187957764;iRNA_m5C:0.999536721880173 25582 chr7 101837159 101837159 1 + G A KIRP 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCACTGGGACA < 41bp 1 0.0186446126197802 1 0.179644852876663 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837159 nonsynonymous SNV 0.883 0 33 hm5C_associated_SNPs_24889 0 0 1 0 2 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25582 DeepMRMD:1;iRNA_m5C:0.999536712157815 25583 chr7 101837159 101837159 1 + G A KIRP 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCGTCCGAGGGCACTGGGACAC < 41bp 1 0.0799770780849337 1 0.29236513376236 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837159 nonsynonymous SNV 0.883 0 32 hm5C_associated_SNPs_24890 0 0 1 0 2 Exosome 1 0.50023376143112 1 0.999532477137759 hm5C_site_25583 DeepMRMD:1;iRNA_m5C:0.999532477137759 25584 chr6 1390675 1390675 1 + C G KIRP 1390666 + 1390646 1390686 41 ACGAGTGCTTCATCAAGCTGCCTAAGGGCCTCGGGCGGCCC ACGAGTGCTTCATCAAGCTGCCTAAGGGCGTCGGGCGGCCC < 41bp 1 0.135732514234238 1 0.214955151081085 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1390666 chr6:1390675 nonsynonymous SNV 0.956 2 30 hm5C_associated_SNPs_24891 0 0 0 0 0 exosome 1 0.500231643921806 1 0.999536712156387 hm5C_site_25584 DeepMRMD:1;iRNA_m5C:0.999536712156387 25585 chr17 77077141 77077141 1 + C G KIRP 77077130 + 77077110 77077150 41 AAAGTGGGCAGCTCAAATGGCAAGACGAACTCAACCAGCAC AAAGTGGGCAGCTCAAATGGCAAGACGAACTGAACCAGCAC < 41bp 1 0.674160117192767 1 0.703435242176056 experiment 0.651679765614465 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ENGASE ENSG00000167280 CDS Human protein_coding chr17:77077130 chr17:77077141 synonymous SNV . 0 32 hm5C_associated_SNPs_24893 0 0 1 0 1 chromatin 1 0.500231643921043 0.593129515647888 0.999536712157915 hm5C_site_25585 DeepMRMD:0.593129515647888;iRNA_m5C:0.999536712157915 25586 chr17 62223780 62223780 1 + C A KIRP 62223763 + 62223743 62223783 41 GTCAATCTGCAGCGCTAGAGCATGTGCTTGCGCATAACTGG GTCAATCTGCAGCGCTAGAGCATGTGCTTGCGCATAAATGG < 41bp 1 0.554749179579329 1 0.381127506494522 experiment 0.890501640841341 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223763 chr17:62223780 . . 0 38 hm5C_associated_SNPs_24895 0 0 1 0 0 unknown 1 0.500231643581028 1 0.999536712837944 hm5C_site_25586 DeepMRMD:1;iRNA_m5C:0.999536712837944 25587 chr17 62223780 62223780 1 + C A KIRP 62223769 + 62223749 62223789 41 CTGCAGCGCTAGAGCATGTGCTTGCGCATAACTGGGGCCGC CTGCAGCGCTAGAGCATGTGCTTGCGCATAAATGGGGCCGC < 41bp 1 0.330533949169647 1 0.0931185483932495 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223769 chr17:62223780 . . 0 32 hm5C_associated_SNPs_24896 0 0 1 0 0 unknown 1 0.500231643920646 1 0.999536712158707 hm5C_site_25587 DeepMRMD:1;iRNA_m5C:0.999536712158707 25588 chr17 62223780 62223780 1 + C A KIRP 62223787 + 62223767 62223807 41 TGCTTGCGCATAACTGGGGCCGCCTGGCCTCCCGCGGGCGG TGCTTGCGCATAAATGGGGCCGCCTGGCCTCCCGCGGGCGG < 41bp 1 0.265614839634648 1 0.0357026755809784 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223787 chr17:62223780 . . 0 14 hm5C_associated_SNPs_24897 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_25588 DeepMRMD:1;iRNA_m5C:0.999536712157815 25589 chr17 62223780 62223780 1 + C A KIRP 62223795 + 62223775 62223815 41 CATAACTGGGGCCGCCTGGCCTCCCGCGGGCGGCCTTTTTA CATAAATGGGGCCGCCTGGCCTCCCGCGGGCGGCCTTTTTA < 41bp 1 0.414306252859904 1 0.409014225006104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223795 chr17:62223780 . . 0 6 hm5C_associated_SNPs_24898 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_25589 DeepMRMD:1;iRNA_m5C:0.999536712157815 25590 chr1 44058242 44058242 1 + C G KIRP 44058240 + 44058220 44058260 41 TATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCA TATGGGGGTGGGCGTCTTCACCGCCACCATTGAGGCCCGCA < 41bp 1 0.192266101092451 1 0.157446771860123 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44058240 chr1:44058242 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_24899 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25590 DeepMRMD:1;iRNA_m5C:0.999536712157815 25591 chr16 2818196 2818196 1 + C G KIRP 2818203 + 2818183 2818223 41 TCCTCCTCCTCCTCTGGCTCCAGTTCTAGTGACTCAGAGGG TCCTCCTCCTCCTGTGGCTCCAGTTCTAGTGACTCAGAGGG < 41bp 1 0.106219247747464 1 0.407213389873505 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2818203 chr16:2818196 nonsynonymous SNV 0.959 3 14 hm5C_associated_SNPs_24900 0 0 1 0 0 Nucleus 1 0.500231643921099 1 0.999536712157801 hm5C_site_25591 DeepMRMD:1;iRNA_m5C:0.999536712157801 25592 chr6 148808752 148808752 1 + C G KIRP 148808768 + 148808748 148808788 41 AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC AGCTGAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC < 41bp 1 0.666730348642799 1 0.300736874341965 experiment 0.666539302714402 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148808768 chr6:148808752 synonymous SNV . 0 5 hm5C_associated_SNPs_24901 0 0 0 0 2 Cytosol 1 0.500231643950318 1 0.999536712099363 hm5C_site_25592 DeepMRMD:1;iRNA_m5C:0.999536712099363 25593 chr2 32656054 32656054 1 + A C KIRP 32656070 + 32656050 32656090 41 TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAA TAGACGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAA < 41bp 1 0.270888619611634 1 0.0984092354774475 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656070 chr2:32656054 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_24902 0 0 1 0 0 Nucleus 1 0.500231292431925 1 0.999537415136151 hm5C_site_25593 DeepMRMD:1;iRNA_m5C:0.999537415136151 25594 chr19 19603133 19603133 1 + G T KIRP 19603138 + 19603118 19603158 41 CATGAAGTCCGAGAGGAGACCCCCCTCACCTGACGTGATTG CATGAAGTCCGAGAGTAGACCCCCCTCACCTGACGTGATTG < 41bp 1 0.0817209670192623 1 0.0997573137283325 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19603138 chr19:19603133 nonsynonymous SNV 0.931 2 16 hm5C_associated_SNPs_24903 0 0 0 0 1 Cytosol 1 0.500231461692351 1 0.999537076615298 hm5C_site_25594 DeepMRMD:1;iRNA_m5C:0.999537076615298 25595 chr2 27440797 27440797 1 + C A KIRP 27440789 + 27440769 27440809 41 ACCCCGAGGCCCTCACCGATCCCTCCTACAAGGCACAGATC ACCCCGAGGCCCTCACCGATCCCTCCTAAAAGGCACAGATC < 41bp 1 0.0446679932201439 1 0.162683725357056 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27440789 chr2:27440797 stopgain 0.998 1 29 hm5C_associated_SNPs_24904 0 0 1 0 1 Exosome 1 0.50023164392109 1 0.999536712157819 hm5C_site_25595 DeepMRMD:1;iRNA_m5C:0.999536712157819 25596 chr11 7618800 7618800 1 + C G KIRP 7618802 + 7618782 7618822 41 CTGGAACAGGTGAGTGTCCTCACAGACCAAGTAGAAGCCCA CTGGAACAGGTGAGTGTCGTCACAGACCAAGTAGAAGCCCA < 41bp 1 0.592698174559698 1 0.760387718677521 experiment 0.814603650880604 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7618802 chr11:7618800 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_24907 0 0 0 0 1 Cytosol 1 0.500231639241357 0.479224562644958 0.999536721517286 hm5C_site_25596 DeepMRMD:0.479224562644958;iRNA_m5C:0.999536721517286 25597 chr14 102466716 102466716 1 + G A KIRP 102466707 + 102466687 102466727 41 AAATCGATCAGATGAAGGAGCAACCCTGGGTTTCAGTACAG AAATCGATCAGATGAAGGAGCAACCCTGGATTTCAGTACAG < 41bp 1 0.0429286061353938 1 0.197894483804703 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466707 chr14:102466716 nonsynonymous SNV 0.966 1 30 hm5C_associated_SNPs_24908 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25597 DeepMRMD:1;iRNA_m5C:0.999536712157815 25598 chr12 6976722 6976722 1 + T C KIRP 6976702 + 6976682 6976722 41 GCCGCGACTGCGCGCAGACACTGACCTTCAGCGCCTCGGCT GCCGCGACTGCGCGCAGACACTGACCTTCAGCGCCTCGGCC < 41bp 1 0.560254796365643 1 0.0342004001140594 experiment 0.879490407268715 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6976702 chr12:6976722 nonsynonymous SNV 0.000 0 41 hm5C_associated_SNPs_24909 0 0 1 0 0 Ribosome 1 0.500231644636449 1 0.999536710727102 hm5C_site_25598 DeepMRMD:1;iRNA_m5C:0.999536710727102 25599 chr20 30723909 30723909 1 + A G KIRP 30723891 + 30723871 30723911 41 CATCAGGCTGTGAAGCTCACCAGCTCTCGAACCCAGCTACC CATCAGGCTGTGAAGCTCACCAGCTCTCGAACCCAGCTGCC < 41bp 1 0.449494261246951 1 0.664496839046478 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30723891 chr20:30723909 synonymous SNV . 0 39 hm5C_associated_SNPs_24910 0 0 1 0 2 Nucleus 1 0.500231643919629 0.671006321907044 0.999536712160743 hm5C_site_25599 DeepMRMD:0.671006321907044;iRNA_m5C:0.999536712160743 25600 chr1 198231718 198231718 1 + T G KIRP 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AAGGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG < 41bp 1 0.152516160420287 1 0.0970155894756317 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231718 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_24911 0 0 0 0 2 Nucleus 1 0.500231655191325 1 0.999536689617351 hm5C_site_25600 DeepMRMD:1;iRNA_m5C:0.999536689617351 25601 chr4 57891054 57891054 1 + A G KIRP 57891056 + 57891036 57891076 41 CTTTTTTTTTTAAAAGGTATCGGCTAACAAGGGTGAAATTG CTTTTTTTTTTAAAAGGTGTCGGCTAACAAGGGTGAAATTG < 41bp 1 0.341517471203792 1 0.437217444181442 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57891056 chr4:57891054 synonymous SNV . 0 19 hm5C_associated_SNPs_24912 0 0 1 0 1 Nucleus 1 0.500231644954315 1 0.999536710091369 hm5C_site_25601 DeepMRMD:1;iRNA_m5C:0.999536710091369 25602 chr17 73746316 73746316 1 + G A KIRP 73746321 + 73746301 73746341 41 GATCCATTTCAACTGGCTGCCCCCTTCTGGCAAGCCAATGG GATCCATTTCAACTGACTGCCCCCTTCTGGCAAGCCAATGG < 41bp 1 0.116066902960487 1 0.0677730441093445 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73746321 chr17:73746316 stopgain 1.000 1 16 hm5C_associated_SNPs_24913 0 0 0 0 0 Cytosol 1 0.500231643920036 1 0.999536712159928 hm5C_site_25602 DeepMRMD:1;iRNA_m5C:0.999536712159928 25603 chr17 73746316 73746316 1 + G A KIRP 73746322 + 73746302 73746342 41 ATCCATTTCAACTGGCTGCCCCCTTCTGGCAAGCCAATGGG ATCCATTTCAACTGACTGCCCCCTTCTGGCAAGCCAATGGG < 41bp 1 0.0612940334720182 1 0.0479975044727325 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73746322 chr17:73746316 stopgain 1.000 1 15 hm5C_associated_SNPs_24914 0 0 0 0 0 Cytosol 1 0.500231643917646 1 0.999536712164708 hm5C_site_25603 DeepMRMD:1;iRNA_m5C:0.999536712164708 25604 chr11 108206609 108206609 1 + A C KIRP 108206601 + 108206581 108206621 41 GACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT GACCTGAGACAAGATGCTGTCATGCAACCGGTCTTCCAGAT < 41bp 1 0.175647673362855 1 0.234654277563095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108206601 chr11:108206609 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_24915 0 0 1 0 2 Nucleus 1 0.500231643773896 1 0.999536712452209 hm5C_site_25604 DeepMRMD:1;iRNA_m5C:0.999536712452209 25605 chr10 76468112 76468112 1 + T C KIRP 76468126 + 76468106 76468146 41 AGCCTCTGACTGAATGTATCCGTGCTGGCCACTATGCAGCA AGCCTCCGACTGAATGTATCCGTGCTGGCCACTATGCAGCA < 41bp 1 0.421775619041493 1 0.704199910163879 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADK ENSG00000156110 CDS Human protein_coding chr10:76468126 chr10:76468112 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_24916 0 0 1 0 1 Ribosome 1 0.500217824866557 0.591600179672242 0.999564350266886 hm5C_site_25605 DeepMRMD:0.591600179672242;iRNA_m5C:0.999564350266886 25606 chr2 131801882 131801882 1 + G A KIRP 131801875 + 131801855 131801895 41 AGGCCAGCATCTGGCAGGACCTGCTCCGCCGCGACGTGTTG AGGCCAGCATCTGGCAGGACCTGCTCCACCGCGACGTGTTG < 41bp 1 0.15939160989592 1 0.0837984681129456 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131801875 chr2:131801882 nonsynonymous SNV 0.988 5 28 hm5C_associated_SNPs_24917 0 0 0 0 1 nucleus 1 0.500231400512177 1 0.999537198975646 hm5C_site_25606 DeepMRMD:1;iRNA_m5C:0.999537198975646 25607 chr7 44685022 44685022 1 + G T KIRP 44685003 + 44684983 44685023 41 CAGAGTCCCCTTCCCCTGAGCCGAGGCTCCCTGGCTGCTGT CAGAGTCCCCTTCCCCTGAGCCGAGGCTCCCTGGCTGCTTT < 41bp 1 0.297452241149274 1 0.613104283809662 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44685003 chr7:44685022 nonsynonymous SNV 0.650 0 40 hm5C_associated_SNPs_24918 0 0 1 0 1 Nucleus 1 0.500231643872613 0.773791432380676 0.999536712254775 hm5C_site_25607 DeepMRMD:0.773791432380676;iRNA_m5C:0.999536712254775 25608 chr1 28862497 28862497 1 + G A KIRP 28862499 + 28862479 28862519 41 TTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTC TTGCCATCTCCCATGAGGACCACGTGTACGGCTTCGGCCTC < 41bp 1 0.654526601093611 1 0.123857408761978 experiment 0.690946797812778 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862499 chr1:28862497 nonsynonymous SNV 0.858 5 19 hm5C_associated_SNPs_24919 0 0 1 0 1 Ribosome 1 0.500231644649755 1 0.999536710700489 hm5C_site_25608 DeepMRMD:1;iRNA_m5C:0.999536710700489 25609 chr20 25198149 25198149 1 + G C KIRP 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGGCACCCTGCACGCCTCCCCACCCGGCTACCTGACGGC < 41bp 1 0.124491465332952 1 0.0676386058330536 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198149 nonsynonymous SNV 0.072 0 15 hm5C_associated_SNPs_24920 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643923198 1 0.999536712153604 hm5C_site_25609 DeepMRMD:1;iRNA_m5C:0.999536712153604 25610 chr6 34730469 34730469 1 + T C KIRP 34730453 + 34730433 34730473 41 ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGACTGAC < 41bp 1 0.650417150971383 1 0.838448762893677 experiment 0.699165698057234 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRPC ENSG00000124562 CDS Human protein_coding chr6:34730453 chr6:34730469 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_24921 0 0 1 0 2 Ribosome 1 0.500231572305957 0.323102474212646 0.999536855388086 hm5C_site_25610 DeepMRMD:0.323102474212646;iRNA_m5C:0.999536855388086 25611 chr7 79842142 79842142 1 + A G KIRP 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAGATCAAAAAGAGCCCTCTCACTATATGCTATCCAG < 41bp 1 0.120290350835709 1 0.0629518628120422 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842142 synonymous SNV . 0 7 hm5C_associated_SNPs_24922 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25611 DeepMRMD:1;iRNA_m5C:0.999536712157815 25612 chr3 50005960 50005960 1 + G T KIRP 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAATATAAGT < 41bp 1 0.0882594598773504 1 0.224473655223846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005960 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_24923 0 0 1 4 0 Nucleus 1 0.500231659619876 1 0.999536680760248 hm5C_site_25612 DeepMRMD:1;iRNA_m5C:0.999536680760248 25613 chr4 25396298 25396298 1 + A G KIRP 25396309 + 25396289 25396329 41 GTAGTGCTGAACTTCAGACTCTCTTGATGAATCAGTTAACA GTAGTGCTGGACTTCAGACTCTCTTGATGAATCAGTTAACA < 41bp 1 0.25137952257545 1 0.141301870346069 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25396309 chr4:25396298 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_24924 0 0 1 0 2 chromatin 1 0.500231631324447 1 0.999536737351106 hm5C_site_25613 DeepMRMD:1;iRNA_m5C:0.999536737351106 25614 chr7 139107032 139107032 1 + T A KIRP 139107012 + 139106992 139107032 41 GAGATCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAAT GAGATCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAAA < 41bp 1 0.209628237157829 1 0.689703464508057 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107012 chr7:139107032 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_24925 0 0 1 0 0 unknown 1 0.500231652799631 0.620593070983886 0.999536694400738 hm5C_site_25614 DeepMRMD:0.620593070983886;iRNA_m5C:0.999536694400738 25615 chr7 139107032 139107032 1 + T A KIRP 139107016 + 139106996 139107036 41 TCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCA TCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAAAGGCA < 41bp 1 0.0854970936584389 1 0.155830532312393 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107016 chr7:139107032 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_24926 0 0 1 0 0 unknown 1 0.500231710242149 1 0.999536579515703 hm5C_site_25615 DeepMRMD:1;iRNA_m5C:0.999536579515703 25616 chr7 139107032 139107032 1 + T A KIRP 139107017 + 139106997 139107037 41 CGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAG CGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAAAGGCAG < 41bp 1 0.186264226123515 1 0.0635410249233246 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107017 chr7:139107032 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_24927 0 0 1 0 0 unknown 1 0.500232552996326 1 0.999534894007348 hm5C_site_25616 DeepMRMD:1;iRNA_m5C:0.999534894007348 25617 chr7 139107032 139107032 1 + T A KIRP 139107028 + 139107008 139107048 41 GAAGCGGTCCTATGAGAGTGCTAATGGCAGATCAGAAGACA GAAGCGGTCCTATGAGAGTGCTAAAGGCAGATCAGAAGACA < 41bp 1 0.641684114870294 1 0.322354674339294 experiment 0.716631770259412 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107028 chr7:139107032 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_24928 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_25617 DeepMRMD:1;iRNA_m5C:0.999536712157814 25618 chr7 139107032 139107032 1 + T A KIRP 139107035 + 139107015 139107055 41 TCCTATGAGAGTGCTAATGGCAGATCAGAAGACAGGAGGAG TCCTATGAGAGTGCTAAAGGCAGATCAGAAGACAGGAGGAG < 41bp 1 0.529639212405254 1 0.515307903289795 experiment 0.940721575189491 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107035 chr7:139107032 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_24929 0 0 1 0 0 unknown 1 0.500231643921088 0.96938419342041 0.999536712157823 hm5C_site_25618 DeepMRMD:0.96938419342041;iRNA_m5C:0.999536712157823 25619 chr20 62374341 62374341 1 + T C KIRP 62374321 + 62374301 62374341 41 AGCCTGCCGCTGGAAGAAAGCCTGCCAGCGGTTCCTGGACT AGCCTGCCGCTGGAAGAAAGCCTGCCAGCGGTTCCTGGACC < 41bp 1 0.169514564545298 1 0.318797469139099 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62374321 chr20:62374341 stoploss 0.778 0 41 hm5C_associated_SNPs_24930 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25619 DeepMRMD:1;iRNA_m5C:0.999536712157815 25620 chr7 94057039 94057039 1 + G T KIRP 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC CGATGGAGACTTCTACAGGGCTGACCAGCCTCTCTCAGCAC < 41bp 1 0.124537581985908 1 0.0206746459007263 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057039 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_24932 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643922508 1 0.999536712154984 hm5C_site_25620 DeepMRMD:1;iRNA_m5C:0.999536712154984 25621 chr7 94057039 94057039 1 + G T KIRP 94057032 + 94057012 94057052 41 GAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCT GAGACTTCTACAGGGCTGACCAGCCTCTCTCAGCACCTTCT < 41bp 1 0.112923924371485 1 0.241721004247665 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057032 chr7:94057039 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_24933 0 0 0 0 0 Endoplasmic reticulum 1 0.500231647565215 1 0.999536704869571 hm5C_site_25621 DeepMRMD:1;iRNA_m5C:0.999536704869571 25622 chr20 31374365 31374365 1 + C G KIRP 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGGCACAGGCCTTCCCCAGGTTCCACCCGAGGCCG < 41bp 1 0.64565192022979 1 0.540468275547028 experiment 0.70869615954042 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374365 nonsynonymous SNV 0.117 4 25 hm5C_associated_SNPs_24934 0 0 0 0 1 chromatin 1 0.500231643071489 0.919063448905944 0.999536713857021 hm5C_site_25622 DeepMRMD:0.919063448905944;iRNA_m5C:0.999536713857021 25623 chr10 17276732 17276732 1 + C G KIRP 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT GGAACAATGACGGCCTGCGCCAGGCAAAGCAGGAGTCCACT < 41bp 1 0.50747860041638 1 0.849276065826416 experiment 0.98504279916724 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276732 nonsynonymous SNV 0.997 5 13 hm5C_associated_SNPs_24936 0 0 1 0 2 Ribosome 1 0.500231644011853 0.301447868347168 0.999536711976293 hm5C_site_25623 DeepMRMD:0.301447868347168;iRNA_m5C:0.999536711976293 25624 chr16 4700468 4700468 1 + G T KIRP 4700472 + 4700452 4700492 41 GATCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT GATCTGAACTTCCTGGTCAGCCGCCCGGTCCAGGTGGGTCT < 41bp 1 0.142783906491315 1 0.0697120130062103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4700472 chr16:4700468 nonsynonymous SNV 0.981 4 17 hm5C_associated_SNPs_24937 0 0 1 0 1 Cytosol 1 0.500231643921083 1 0.999536712157834 hm5C_site_25624 DeepMRMD:1;iRNA_m5C:0.999536712157834 25625 chr17 57771125 57771125 1 + T C KIRP 57771132 + 57771112 57771152 41 GCAGGACCCAGTGTTGCCGTCCCTCCCCAGGCACCTTTTGG GCAGGACCCAGTGCTGCCGTCCCTCCCCAGGCACCTTTTGG < 41bp 1 0.0350922076160754 1 0.141295462846756 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57771132 chr17:57771125 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_24938 0 0 1 0 1 Nucleus 1 0.500231642686068 1 0.999536714627864 hm5C_site_25625 DeepMRMD:1;iRNA_m5C:0.999536714627864 25626 chr2 217364692 217364692 1 + T A KIRP 217364687 + 217364667 217364707 41 TATAGACCAAGATGAAGAGACGAGCTGTGGGGATCTGGCAC TATAGACCAAGATGAAGAGACGAGCAGTGGGGATCTGGCAC < 41bp 1 0.626563007154302 1 0.198438376188278 experiment 0.746873985691396 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364687 chr2:217364692 synonymous SNV . 0 26 hm5C_associated_SNPs_24939 0 0 1 0 2 Cytosol 1 0.500231644225028 1 0.999536711549944 hm5C_site_25626 DeepMRMD:1;iRNA_m5C:0.999536711549944 25627 chr2 217364692 217364692 1 + T A KIRP 217364705 + 217364685 217364725 41 GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG GACGAGCAGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG < 41bp 1 0.691548758241717 1 0.145068049430847 experiment 0.616902483516566 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364705 chr2:217364692 synonymous SNV . 0 8 hm5C_associated_SNPs_24940 0 0 1 0 2 Cytosol 1 0.500231655938112 1 0.999536688123775 hm5C_site_25627 DeepMRMD:1;iRNA_m5C:0.999536688123775 25628 chr19 59057198 59057198 1 + G A KIRP 59057191 + 59057171 59057211 41 ACTGTGTGGAGTGCTCGGAGCCTCTGTGTGAGACCTGTGTA ACTGTGTGGAGTGCTCGGAGCCTCTGTATGAGACCTGTGTA < 41bp 1 0.0873415436802791 1 0.0536020696163177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057191 chr19:59057198 nonsynonymous SNV 0.996 5 28 hm5C_associated_SNPs_24941 0 0 1 0 2 Cytosol 1 0.500231643929093 1 0.999536712141813 hm5C_site_25628 DeepMRMD:1;iRNA_m5C:0.999536712141813 25629 chr19 59057198 59057198 1 + G A KIRP 59057205 + 59057185 59057225 41 TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCAGCG TCGGAGCCTCTGTATGAGACCTGTGTAGAGGCGCACCAGCG < 41bp 1 0.353517700341776 1 0.0884530544281006 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057205 chr19:59057198 nonsynonymous SNV 0.996 5 14 hm5C_associated_SNPs_24942 0 0 1 0 2 Cytosol 1 0.500231643921593 1 0.999536712156814 hm5C_site_25629 DeepMRMD:1;iRNA_m5C:0.999536712156814 25630 chr4 79512751 79512751 1 + C T KIRP 79512760 + 79512740 79512780 41 CTGGTGACTTCCGGAAAGCTCTGTTGACTTTGGCAGATGTA CTGGTGACTTCTGGAAAGCTCTGTTGACTTTGGCAGATGTA < 41bp 1 0.218457486674487 1 0.11099910736084 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79512760 chr4:79512751 nonsynonymous SNV 0.999 3 12 hm5C_associated_SNPs_24943 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25630 DeepMRMD:1;iRNA_m5C:0.999536712157815 25631 chr11 66627368 66627368 1 + T A KIRP 66627381 + 66627361 66627401 41 GTGGCCTTGCTGGTTCGGGGCCGGGGGGCCGGAAATGGCCG GTGGCCTAGCTGGTTCGGGGCCGGGGGGCCGGAAATGGCCG < 41bp 1 0.634212055795068 1 0.68546587228775 experiment 0.731575888409864 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627381 chr11:66627368 stopgain 1.000 0 8 hm5C_associated_SNPs_24944 0 0 0 0 0 Ribosome 1 0.500231643921089 0.6290682554245 0.999536712157821 hm5C_site_25631 DeepMRMD:0.6290682554245;iRNA_m5C:0.999536712157821 25632 chr22 38461040 38461040 1 + G A KIRP 38461023 + 38461003 38461043 41 CCACAGGTATTTGACAACACCCCAGCAGCCTTGGACGGCAC CCACAGGTATTTGACAACACCCCAGCAGCCTTGGACGACAC < 41bp 1 0.288615659806304 1 0.0690192878246307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PICK1 ENSG00000100151 CDS Human protein_coding chr22:38461023 chr22:38461040 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_24945 0 0 1 0 2 Ribosome 1 0.500231643922691 1 0.999536712154619 hm5C_site_25632 DeepMRMD:1;iRNA_m5C:0.999536712154619 25633 chr4 8230107 8230107 1 + C T KIRP 8230125 + 8230105 8230145 41 ACCTGGGCCAGCAAAGGAACCAGGCAGTGGGGCTGGCCAAC ACTTGGGCCAGCAAAGGAACCAGGCAGTGGGGCTGGCCAAC < 41bp 1 0.605651380451789 1 0.771212697029114 experiment 0.788697239096423 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8230125 chr4:8230107 synonymous SNV . 0 3 hm5C_associated_SNPs_24947 0 0 0 0 0 cytosol 1 0.500231647350554 0.457574605941772 0.999536705298891 hm5C_site_25633 DeepMRMD:0.457574605941772;iRNA_m5C:0.999536705298891 25634 chr19 36128157 36128157 1 + G A KIRP 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAAGTGAT < 41bp 1 0.172027483035868 1 0.605333209037781 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128157 synonymous SNV . 0 36 hm5C_associated_SNPs_24948 0 0 1 0 2 Ribosome 1 0.500231643921092 0.789333581924438 0.999536712157815 hm5C_site_25634 DeepMRMD:0.789333581924438;iRNA_m5C:0.999536712157815 25635 chr15 79185887 79185887 1 + T C KIRP 79185883 + 79185863 79185903 41 ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCCAAGAA ATATTTTTGTCTTCATAGCTCTTTCATCTTCCTGCCAAGAA < 41bp 1 0.0325058772089042 1 0.052255243062973 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79185883 chr15:79185887 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_24949 0 0 1 0 2 Nucleus 1 0.50023164459347 1 0.999536710813059 hm5C_site_25635 DeepMRMD:1;iRNA_m5C:0.999536710813059 25636 chr16 27761006 27761006 1 + T A KIRP 27761012 + 27760992 27761032 41 GTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG GTGCCTTCGACCGCACCCACCGGGGACGCATCTCCAACACG < 41bp 1 0.52847195817886 1 0.862422943115234 experiment 0.943056083642279 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27761012 chr16:27761006 nonsynonymous SNV 0.991 1 15 hm5C_associated_SNPs_24951 0 0 0 0 0 Nucleus 1 0.500231644686056 0.275154113769532 0.999536710627888 hm5C_site_25636 DeepMRMD:0.275154113769532;iRNA_m5C:0.999536710627888 25637 chr10 31812949 31812949 1 + G T KIRP 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCTGA < 41bp 1 0.248385163389494 1 0.197263538837433 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812949 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_24952 0 0 1 0 1 Nucleus 1 0.500231643921101 1 0.999536712157797 hm5C_site_25637 DeepMRMD:1;iRNA_m5C:0.999536712157797 25638 chr5 7878202 7878202 1 + G T KIRP 7878185 + 7878165 7878205 41 ATCACCTGCATCCTCGAGGACAGACCTTGTGAAGTCAGAGC ATCACCTGCATCCTCGAGGACAGACCTTGTGAAGTCATAGC < 41bp 1 0.284620377268449 1 0.078850656747818 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7878185 chr5:7878202 stopgain 0.015 0 38 hm5C_associated_SNPs_24953 0 0 1 0 0 Nucleus 1 0.500231642724086 1 0.999536714551827 hm5C_site_25638 DeepMRMD:1;iRNA_m5C:0.999536714551827 25639 chr5 7878202 7878202 1 + G T KIRP 7878190 + 7878170 7878210 41 CTGCATCCTCGAGGACAGACCTTGTGAAGTCAGAGCTGCTA CTGCATCCTCGAGGACAGACCTTGTGAAGTCATAGCTGCTA < 41bp 1 0.543548910868611 1 0.0485751032829285 experiment 0.912902178262778 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7878190 chr5:7878202 stopgain 0.015 0 33 hm5C_associated_SNPs_24954 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25639 DeepMRMD:1;iRNA_m5C:0.999536712157815 25640 chr3 50257565 50257565 1 + A G KIRP 50257570 + 50257550 50257590 41 TTGAGCTTCATCATCATTGACTGGGCCTCAGGGACCAGCCG TTGAGCTTCATCATCGTTGACTGGGCCTCAGGGACCAGCCG < 41bp 1 0.609414838266627 1 0.263521134853363 experiment 0.781170323466745 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50257570 chr3:50257565 . 1.000 0 16 hm5C_associated_SNPs_24955 0 0 1 0 1 exosome 1 0.5002316439211 1 0.999536712157801 hm5C_site_25640 DeepMRMD:1;iRNA_m5C:0.999536712157801 25641 chr22 30413918 30413918 1 + G T KIRP 30413919 + 30413899 30413939 41 TCCTCCCCCCTCCTCAGGTGCTGTACCCTGTGTGCCATGTG TCCTCCCCCCTCCTCAGGTTCTGTACCCTGTGTGCCATGTG < 41bp 1 0.217686646096059 1 0.118562817573547 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30413919 chr22:30413918 synonymous SNV . 0 20 hm5C_associated_SNPs_24956 0 0 1 0 1 Ribosome 1 0.500231643921319 1 0.999536712157363 hm5C_site_25641 DeepMRMD:1;iRNA_m5C:0.999536712157363 25642 chr16 19548870 19548870 1 + T A KIRP 19548865 + 19548845 19548885 41 AAAAAGATACCCTAAGGGATCTGGCTTCGTTAACAAGAATA AAAAAGATACCCTAAGGGATCTGGCATCGTTAACAAGAATA < 41bp 1 0.382011229305086 1 0.131814986467361 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCP110 ENSG00000103540 CDS Human protein_coding chr16:19548865 chr16:19548870 nonsynonymous SNV 0.958 0 26 hm5C_associated_SNPs_24957 0 0 1 0 1 Cytosol 1 0.500231643921048 1 0.999536712157904 hm5C_site_25642 DeepMRMD:1;iRNA_m5C:0.999536712157904 25643 chr7 150769158 150769158 1 + C A KIRP 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT TCCCGCTTCACCAAGGAGATCTTCGCCTTCTTGATCTCACT < 41bp 1 0.0567112412170182 1 0.0287495851516724 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769158 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_24958 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25643 DeepMRMD:1;iRNA_m5C:0.999536712157815 25644 chr7 45112359 45112359 1 + C T KIRP 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACTTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.307863478745071 1 0.051062136888504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112359 synonymous SNV . 0 3 hm5C_associated_SNPs_24959 0 0 1 7 2 Ribosome 1 0.500231591368579 1 0.999536817262842 hm5C_site_25644 DeepMRMD:1;iRNA_m5C:0.999536817262842 25645 chr8 99019720 99019720 1 + C T KIRP 99019717 + 99019697 99019737 41 GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGACCATGG GGTTTTGCAGGGGTGGATTACTGTCTGCTGAGTGACCATGG < 41bp 1 0.34550993086883 1 0.142290115356445 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019717 chr8:99019720 synonymous SNV . 0 24 hm5C_associated_SNPs_24960 0 0 0 0 1 Cytosol 1 0.500231644055884 1 0.999536711888231 hm5C_site_25645 DeepMRMD:1;iRNA_m5C:0.999536711888231 25646 chr11 9451343 9451343 1 + G A KIRP 9451359 + 9451339 9451379 41 TGAAGAAGTTACTCCTATTGCAGTAGAAATGACACAACATT TGAAAAAGTTACTCCTATTGCAGTAGAAATGACACAACATT < 41bp 1 0.532627788177613 1 0.555414199829102 experiment 0.934744423644775 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9451359 chr11:9451343 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_24961 0 0 1 0 1 Cytosol 1 0.500231645930349 0.889171600341796 0.999536708139302 hm5C_site_25646 DeepMRMD:0.889171600341796;iRNA_m5C:0.999536708139302 25647 chr16 30749163 30749163 1 + C G KIRP 30749182 + 30749162 30749202 41 TCTCTCACCCCTTCTGCACCCAGCCTGACCTTGGAGGCTGG TGTCTCACCCCTTCTGCACCCAGCCTGACCTTGGAGGCTGG < 41bp 1 0.221607264618151 1 0.497393310070038 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30749182 chr16:30749163 nonsynonymous SNV 0.025 2 2 hm5C_associated_SNPs_24962 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25647 DeepMRMD:1;iRNA_m5C:0.999536712157815 25648 chr21 47978259 47978259 1 + G A KIRP 47978252 + 47978232 47978272 41 AAGGACCTGGGCCTGCCGGCCCGCGCCGTAAGCACCACGTT AAGGACCTGGGCCTGCCGGCCCGCGCCATAAGCACCACGTT < 41bp 1 0.290337026864449 1 0.607302486896515 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47978252 chr21:47978259 nonsynonymous SNV 0.506 3 28 hm5C_associated_SNPs_24963 0 0 1 0 1 Cytosol 1 0.500231643853735 0.78539502620697 0.99953671229253 hm5C_site_25648 DeepMRMD:0.78539502620697;iRNA_m5C:0.99953671229253 25649 chr10 135209677 135209677 1 + C T KIRP 135209670 + 135209650 135209690 41 TACCTTAATTTTGCCACATCCCACTTTCAGGCCGCAACCCT TACCTTAATTTTGCCACATCCCACTTTTAGGCCGCAACCCT < 41bp 1 0.0800027056028172 1 0.117035150527954 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135209670 chr10:135209677 nonsynonymous SNV 0.998 1 28 hm5C_associated_SNPs_24964 0 0 1 0 1 Cytosol 1 0.50023164395737 1 0.999536712085259 hm5C_site_25649 DeepMRMD:1;iRNA_m5C:0.999536712085259 25650 chr19 1255053 1255053 1 + C T LGG 1255058 + 1255038 1255078 41 GGTCTTCTCAGGGACCTTCTCTGGTAGGTGTCACAGCACAT GGTCTTCTCAGGGACTTTCTCTGGTAGGTGTCACAGCACAT < 41bp 1 0.698332876813565 1 0.507118999958038 experiment 0.603334246372869 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MIDN ENSG00000167470 CDS Human protein_coding chr19:1255058 chr19:1255053 synonymous SNV . 0 16 hm5C_associated_SNPs_24966 0 0 1 0 1 chromatin 1 0.50023164392101 0.985762000083924 0.999536712157979 hm5C_site_25650 DeepMRMD:0.985762000083924;iRNA_m5C:0.999536712157979 25651 chr15 99673028 99673028 1 + G T LGG 99673023 + 99673003 99673043 41 GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGC GGAGCTCTCGGTGTGTCTGACCGTGTTTCCTGGAGAGACGC < 41bp 1 0.212080859634698 1 0.056707352399826 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99673023 chr15:99673028 nonsynonymous SNV 0.269 3 26 hm5C_associated_SNPs_24967 0 0 1 0 1 exosome 1 0.500231668444766 1 0.999536663110468 hm5C_site_25651 DeepMRMD:1;iRNA_m5C:0.999536663110468 25652 chr5 53815358 53815358 1 + C G LGG 53815367 + 53815347 53815387 41 TAGCGCTGTATCAGGGGCATCTGGCTAACTTCCCGGACATC TAGCGCTGTATGAGGGGCATCTGGCTAACTTCCCGGACATC < 41bp 1 0.393801648362055 1 0.46127861738205 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815367 chr5:53815358 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_24968 0 0 1 0 1 chromatin 1 0.500231643921122 1 0.999536712157755 hm5C_site_25652 DeepMRMD:1;iRNA_m5C:0.999536712157755 25653 chr2 32724735 32724735 1 + A T LGG 32724730 + 32724710 32724750 41 TATTTCTGCCGTGATAGAATCGGTTACATTTTTAGTGCACC TATTTCTGCCGTGATAGAATCGGTTTCATTTTTAGTGCACC < 41bp 1 0.0513132576956378 1 0.248642772436142 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32724730 chr2:32724735 nonsynonymous SNV 0.997 1 26 hm5C_associated_SNPs_24971 0 0 1 0 0 Nucleus 1 0.500231595003576 1 0.999536809992849 hm5C_site_25653 DeepMRMD:1;iRNA_m5C:0.999536809992849 25654 chr3 160122126 160122126 1 + A C LGG 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGCTTATGAAGTCATTCCTAACAGTAATTTCTATGTAT < 41bp 1 0.111057899554337 1 0.0577127039432526 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122126 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_24972 0 0 1 2 1 Nucleus 1 0.500231743909247 1 0.999536512181507 hm5C_site_25654 DeepMRMD:1;iRNA_m5C:0.999536512181507 25655 chrX 73046827 73046827 1 + T C LGG 73046824 - 73046804 73046844 41 GGCCTGAAACCAACAAAAGCCTCAAGAGCCAAGAAAACAGA GGCCTGAAACCAACAAAGGCCTCAAGAGCCAAGAAAACAGA < 41bp 1 0.421623252187882 1 0.609633326530457 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046824 chrX:73046827 . . 0 18 hm5C_associated_SNPs_24973 0 0 1 2 0 unknown 1 0.500231574269103 0.780733346939086 0.999536851461793 hm5C_site_25655 DeepMRMD:0.780733346939086;iRNA_m5C:0.999536851461793 25656 chrX 73046827 73046827 1 + T C LGG 73046834 - 73046814 73046854 41 AGAAGCCTCAGGCCTGAAACCAACAAAAGCCTCAAGAGCCA AGAAGCCTCAGGCCTGAAACCAACAAAGGCCTCAAGAGCCA < 41bp 1 0.587414280553409 1 0.367948114871979 experiment 0.825171438893182 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046834 chrX:73046827 . . 0 28 hm5C_associated_SNPs_24974 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_25656 DeepMRMD:1;iRNA_m5C:0.999536712157815 25657 chr16 53348818 53348818 1 + T A LGG 53348814 + 53348794 53348834 41 TACTCAACCTCAAGGAATTCCTGATACAGAAAGTCCAGTTC TACTCAACCTCAAGGAATTCCTGAAACAGAAAGTCCAGTTC < 41bp 1 0.480448835501821 1 0.17633268237114 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD9 ENSG00000177200 CDS Human protein_coding chr16:53348814 chr16:53348818 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_24975 0 0 0 0 1 Ribosome 1 0.500231646201018 1 0.999536707597964 hm5C_site_25657 DeepMRMD:1;iRNA_m5C:0.999536707597964 25658 chr16 53348818 53348818 1 + T A LGG 53348820 + 53348800 53348840 41 ACCTCAAGGAATTCCTGATACAGAAAGTCCAGTTCCAGTTA ACCTCAAGGAATTCCTGAAACAGAAAGTCCAGTTCCAGTTA < 41bp 1 0.636612817893698 1 0.447980761528015 experiment 0.726774364212604 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD9 ENSG00000177200 CDS Human protein_coding chr16:53348820 chr16:53348818 nonsynonymous SNV 0.997 4 19 hm5C_associated_SNPs_24976 0 0 0 0 1 Ribosome 1 0.500231721046212 1 0.999536557907576 hm5C_site_25658 DeepMRMD:1;iRNA_m5C:0.999536557907576 25659 chr19 50031744 50031744 1 + A G LGG 50031728 + 50031708 50031748 41 CTTTGCCACTCCCCAGGGACCGATGATGTGGCGACCATCAG CTTTGCCACTCCCCAGGGACCGATGATGTGGCGACCGTCAG < 41bp 1 0.567507040796658 1 0.34754005074501 experiment 0.864985918406684 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RCN3 ENSG00000142552 CDS Human protein_coding chr19:50031728 chr19:50031744 synonymous SNV . 0 37 hm5C_associated_SNPs_24977 0 0 1 0 1 membrane 1 0.500231644032101 1 0.999536711935798 hm5C_site_25659 DeepMRMD:1;iRNA_m5C:0.999536711935798 25660 chr1 46977833 46977833 1 + G A LGG 46977851 + 46977831 46977871 41 CAGCACATGGCGGCCACCAACAACCTGGTGCACTACTCGTC CAACACATGGCGGCCACCAACAACCTGGTGCACTACTCGTC < 41bp 1 0.488006842243127 1 0.274754285812378 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46977851 chr1:46977833 synonymous SNV . 0 3 hm5C_associated_SNPs_24978 0 0 0 0 0 nucleolus 1 0.500231643540043 1 0.999536712919914 hm5C_site_25660 DeepMRMD:1;iRNA_m5C:0.999536712919914 25661 chr4 6596402 6596402 1 + G A LGG 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACTTCCGTGCCCTGCACACTCTCAATGTCACCTGGCGTG < 41bp 1 0.186925884759404 1 0.0494726002216339 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596402 nonsynonymous SNV 0.019 0 20 hm5C_associated_SNPs_24979 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643912446 1 0.999536712175109 hm5C_site_25661 DeepMRMD:1;iRNA_m5C:0.999536712175109 25662 chr16 67575592 67575592 1 + T G LGG 67575598 + 67575578 67575618 41 CCCTCAGCTGCTTCTTCTGTCAACAAGGCCTCCACAGTCAC CCCTCAGCTGCTTCGTCTGTCAACAAGGCCTCCACAGTCAC < 41bp 1 0.648236910587585 1 0.745540678501129 experiment 0.703526178824829 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575598 chr16:67575592 synonymous SNV . 0 15 hm5C_associated_SNPs_24980 0 0 1 0 2 unknown 1 0.500230587000407 0.508918642997742 0.999538825999186 hm5C_site_25662 DeepMRMD:0.508918642997742;iRNA_m5C:0.999538825999186 25663 chr19 14568915 14568915 1 + A T LGG 14568926 + 14568906 14568946 41 GTGGCCCCAATGCCTGGGACCAGAGCTTCACTCTGGAGCTG GTGGCCCCATTGCCTGGGACCAGAGCTTCACTCTGGAGCTG < 41bp 1 0.539360018923535 1 0.606367886066437 experiment 0.92127996215293 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14568926 chr19:14568915 nonsynonymous SNV 0.391 1 10 hm5C_associated_SNPs_24981 0 0 1 0 1 Ribosome 1 0.500231643921093 0.787264227867126 0.999536712157815 hm5C_site_25663 DeepMRMD:0.787264227867126;iRNA_m5C:0.999536712157815 25664 chr11 65268906 65268906 1 + C A LGG 65268891 + 65268871 65268911 41 GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGCTGGTA GAGGTCTGTGGAAGAGATGTCCATTGGAGAAATGGATGGTA < 41bp 1 0.140330758054017 1 0.228761494159698 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268891 chr11:65268906 . . 0 36 hm5C_associated_SNPs_24982 0 0 1 0 0 unknown 1 0.500231643777545 1 0.99953671244491 hm5C_site_25664 DeepMRMD:1;iRNA_m5C:0.99953671244491 25665 chr3 196533532 196533532 1 + C T LGG 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGTCCCGCGACCGGATCATACGAA < 41bp 1 0.549846415241325 1 0.739472508430481 experiment 0.900307169517349 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533532 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_24984 0 0 1 0 2 Ribosome 1 0.500231643921092 0.521054983139038 0.999536712157815 hm5C_site_25665 DeepMRMD:0.521054983139038;iRNA_m5C:0.999536712157815 25666 chr18 19751547 19751547 1 + T A LGG 19751565 + 19751545 19751585 41 TGTACCAGACCCTCGCCGCTCTCTCCAGCCAGGGTCCGGCC TGAACCAGACCCTCGCCGCTCTCTCCAGCCAGGGTCCGGCC < 41bp 1 0.249229776712602 1 0.0262877941131592 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GATA6 ENSG00000141448 CDS Human protein_coding chr18:19751565 chr18:19751547 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_24985 0 0 1 0 0 Cytosol 1 0.500231802995925 1 0.99953639400815 hm5C_site_25666 DeepMRMD:1;iRNA_m5C:0.99953639400815 25667 chr17 16342838 16342838 1 + A G LGG 16342848 + 16342828 16342868 41 GATACTTGTAATAGGAAGTGCCGTCAGAAGCGATAACTGAC GATACTTGTAGTAGGAAGTGCCGTCAGAAGCGATAACTGAC < 41bp 1 0.0289423739359801 1 0.35114997625351 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD49B ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342848 chr17:16342838 . . 0 11 hm5C_associated_SNPs_24986 0 0 1 0 0 unknown 1 0.500231354147624 1 0.999537291704752 hm5C_site_25667 DeepMRMD:1;iRNA_m5C:0.999537291704752 25668 chr17 37676268 37676268 1 + G A LGG 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAAGCAGTGCACAGCTGAACAGACCCTACA < 41bp 1 0.209270566648212 1 0.0847953259944916 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676268 nonsynonymous SNV 0.987 3 17 hm5C_associated_SNPs_24987 0 0 1 0 1 Nucleus 1 0.500228148383256 1 0.999543703233487 hm5C_site_25668 DeepMRMD:1;iRNA_m5C:0.999543703233487 25669 chr9 37500851 37500851 1 + G A LGG 37500857 + 37500837 37500877 41 GTGCTCTGGGACCTGGAGTTCCCCACATCATCAACACCAAA GTGCTCTGGGACCTAGAGTTCCCCACATCATCAACACCAAA < 41bp 1 0.4306258961763 1 0.120303630828857 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37500857 chr9:37500851 nonsynonymous SNV 0.482 3 15 hm5C_associated_SNPs_24988 0 0 1 0 2 Ribosome 1 0.500231644685897 1 0.999536710628206 hm5C_site_25669 DeepMRMD:1;iRNA_m5C:0.999536710628206 25670 chr6 7579935 7579935 1 + T C LGG 7579952 + 7579932 7579972 41 AGATTGAAAGGTTGAGGGTTCTACTGCAGGAAGAAGGCACC AGACTGAAAGGTTGAGGGTTCTACTGCAGGAAGAAGGCACC < 41bp 1 0.209285021444391 1 0.330380469560623 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579952 chr6:7579935 nonsynonymous SNV 0.999 5 4 hm5C_associated_SNPs_24989 2 0 1 0 1 Nucleus 1 0.500231643920803 1 0.999536712158394 hm5C_site_25670 DeepMRMD:1;iRNA_m5C:0.999536712158394 Arrhythmogenic right ventricular cardiomyopathy, type 8 Arrhythmogenic right ventricular cardiomyopathy, type 8 25671 chr19 33581715 33581715 1 + C T LGG 33581723 + 33581703 33581743 41 TTTGTGTCTTCACGACAGAACAGAGCAGACAAATCTGTTCT TTTGTGTCTTCATGACAGAACAGAGCAGACAAATCTGTTCT < 41bp 1 0.389690376170015 1 0.217188537120819 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33581723 chr19:33581715 stopgain 0.998 1 13 hm5C_associated_SNPs_24990 0 0 1 0 2 Cytosol 1 0.500231622239805 1 0.999536755520389 hm5C_site_25671 DeepMRMD:1;iRNA_m5C:0.999536755520389 25672 chr12 57575037 57575037 1 + C T LGG 57575017 + 57574997 57575037 41 TGCCCACGTCAGAGACGACCCGCTCCTGCATGTGCACAGCC TGCCCACGTCAGAGACGACCCGCTCCTGCATGTGCACAGCT < 41bp 1 0.0834561640722306 1 0.0741469264030457 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57575017 chr12:57575037 synonymous SNV . 0 41 hm5C_associated_SNPs_24991 0 0 0 0 1 Exosome 1 0.500231643912783 1 0.999536712174435 hm5C_site_25672 DeepMRMD:1;iRNA_m5C:0.999536712174435 25673 chr12 73012760 73012760 1 + G A LGG 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCCAAGCTCTTTATCCTCTAGATAAATTACTGGAC < 41bp 1 0.0854542683106672 1 0.11640727519989 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012760 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_24992 0 0 0 0 2 exosome 1 0.500231643671504 1 0.999536712656992 hm5C_site_25673 DeepMRMD:1;iRNA_m5C:0.999536712656992 25674 chr8 68074125 68074125 1 + A G LGG 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGGCAGCATCATACGTTCCTTTATTCATGTATGTACTTT < 41bp 1 0.236750737745372 1 0.0269953310489655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074125 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_24993 0 0 1 0 2 Cytosol 1 0.500231735349731 1 0.999536529300538 hm5C_site_25674 DeepMRMD:1;iRNA_m5C:0.999536529300538 25675 chr1 156876623 156876623 1 + G A LGG 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCAATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG < 41bp 1 0.313897644362045 1 0.189368307590485 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876623 nonsynonymous SNV 0.841 0 4 hm5C_associated_SNPs_24994 0 0 0 0 1 cytosol 1 0.5002316439178 1 0.9995367121644 hm5C_site_25675 DeepMRMD:1;iRNA_m5C:0.9995367121644 25676 chr15 41191832 41191832 1 + C G LGG 41191817 + 41191797 41191837 41 TTTCCCAGCAACCTGGGCTACAGTGAGTTGGCCTTCTACAC TTTCCCAGCAACCTGGGCTACAGTGAGTTGGCCTTGTACAC < 41bp 1 0.426249595760229 1 0.121107012033463 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41191817 chr15:41191832 nonsynonymous SNV 0.990 1 36 hm5C_associated_SNPs_24995 0 0 1 0 0 chromatin 1 0.500231643904595 1 0.999536712190811 hm5C_site_25676 DeepMRMD:1;iRNA_m5C:0.999536712190811 25677 chr12 111885211 111885211 1 + G A LGG 111885210 + 111885190 111885230 41 TCCTGCTACCCCTGGTTCCACGGCCCCATCTCCAGAGTGAA TCCTGCTACCCCTGGTTCCACAGCCCCATCTCCAGAGTGAA < 41bp 1 0.235845126983899 1 0.337783813476562 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111885210 chr12:111885211 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_24996 0 0 0 0 1 Ribosome 1 0.500231643921098 1 0.999536712157804 hm5C_site_25677 DeepMRMD:1;iRNA_m5C:0.999536712157804 25678 chr19 11141525 11141525 1 + G C LGG 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGCC < 41bp 1 0.467146378254489 1 0.708521723747253 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141525 nonsynonymous SNV 0.422 4 40 hm5C_associated_SNPs_24997 0 0 1 0 1 Nucleus 1 0.500231643921092 0.582956552505494 0.999536712157815 hm5C_site_25678 DeepMRMD:0.582956552505494;iRNA_m5C:0.999536712157815 25679 chr13 76382215 76382215 1 + G A LGG 76382234 + 76382214 76382254 41 GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCTG GAAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCTG < 41bp 1 0.239288566361954 1 0.795315027236938 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76382234 chr13:76382215 nonsynonymous SNV 0.893 3 2 hm5C_associated_SNPs_24998 0 0 0 0 0 Cytosol 1 0.500231643921092 0.409369945526124 0.999536712157815 hm5C_site_25679 DeepMRMD:0.409369945526124;iRNA_m5C:0.999536712157815 25680 chr1 162557442 162557442 1 + C T LGG 162557436 + 162557416 162557456 41 CCAACCATTTCTTCACTGTACCATTTCTGAGAGATGTTGTC CCAACCATTTCTTCACTGTACCATTTTTGAGAGATGTTGTC < 41bp 1 0.0794624845110596 1 0.0143724083900452 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UAP1 ENSG00000117143 CDS Human protein_coding chr1:162557436 chr1:162557442 synonymous SNV . 0 27 hm5C_associated_SNPs_24999 0 0 1 0 1 Ribosome 1 0.500231643448045 1 0.999536713103909 hm5C_site_25680 DeepMRMD:1;iRNA_m5C:0.999536713103909 25681 chr1 31897680 31897680 1 + G A LGG 31897691 + 31897671 31897711 41 ATGCTCTGCGTGAGCAGCAGCCGGGACCCCCGGGCTGCCAT ATGCTCTGCATGAGCAGCAGCCGGGACCCCCGGGCTGCCAT < 41bp 1 0.637341080977454 1 0.842674076557159 experiment 0.725317838045091 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31897691 chr1:31897680 nonsynonymous SNV 0.462 4 10 hm5C_associated_SNPs_25000 0 0 1 0 1 Endoplasmic reticulum 1 0.500231654495988 0.314651846885682 0.999536691008024 hm5C_site_25681 DeepMRMD:0.314651846885682;iRNA_m5C:0.999536691008024 25682 chr5 118484571 118484571 1 + A G LGG 118484585 + 118484565 118484605 41 GGAAAAATTGATCTTGCATACATTTGGGAAGAATGGCCATT GGAAAAGTTGATCTTGCATACATTTGGGAAGAATGGCCATT < 41bp 1 0.0345287351381229 1 0.0820125639438629 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DMXL1 ENSG00000172869 CDS Human protein_coding chr5:118484585 chr5:118484571 nonsynonymous SNV 0.074 0 7 hm5C_associated_SNPs_25001 0 0 1 0 0 Cytosol 1 0.500231643943482 1 0.999536712113036 hm5C_site_25682 DeepMRMD:1;iRNA_m5C:0.999536712113036 25683 chr17 1636832 1636832 1 + C T LGG 1636828 + 1636808 1636848 41 CACTCCTATCCAGGTGACATCATCCGGAAAATCATCCCCAA CACTCCTATCCAGGTGACATCATCTGGAAAATCATCCCCAA < 41bp 1 0.167604513500778 1 0.548644304275513 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1636828 chr17:1636832 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_25003 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 0.902711391448974 0.999536712157815 hm5C_site_25683 DeepMRMD:0.902711391448974;iRNA_m5C:0.999536712157815 25684 chr6 25450191 25450191 1 + A G LGG 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGGCAGCCAGACCGTGGCTGAGCA < 41bp 1 0.415232537624253 1 0.490214794874191 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450191 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_25004 0 0 0 0 2 unknown 1 0.500231644068354 1 0.999536711863293 hm5C_site_25684 DeepMRMD:1;iRNA_m5C:0.999536711863293 25685 chr9 133355812 133355812 1 + C T LGG 133355811 + 133355791 133355831 41 CGTATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC CGTATTGACATCGTGGAGAACTGCTTCATTGGAATGAAGTC < 41bp 1 0.286249230485728 1 0.247995525598526 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355811 chr9:133355812 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_25005 1 0 0 0 2 Ribosome 1 0.500231644088341 1 0.999536711823319 hm5C_site_25685 DeepMRMD:1;iRNA_m5C:0.999536711823319 Citrullinemia type I Citrullinemia type I 25686 chr1 153745465 153745465 1 + C T LGG 153745464 + 153745444 153745484 41 TCCACCAAGCCACCCAAGAGCCGGCGAAAAGCAGCTCTGTC TCCACCAAGCCACCCAAGAGCTGGCGAAAAGCAGCTCTGTC < 41bp 1 0.560789849729733 1 0.639676928520203 experiment 0.878420300540535 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153745464 chr1:153745465 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_25006 0 0 1 0 2 chromatin 1 0.500231639009141 0.720646142959594 0.999536721981718 hm5C_site_25686 DeepMRMD:0.720646142959594;iRNA_m5C:0.999536721981718 25687 chr11 210610 210610 1 + C T LGG 210603 + 210583 210623 41 CTTTACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGAT CTTTACCGACACCTGGGGACCCTTCTCTGGCACTGTGTGAT < 41bp 1 0.012692956713447 1 0.0794930756092072 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:210603 chr11:210610 nonsynonymous SNV 0.897 2 28 hm5C_associated_SNPs_25007 0 0 1 0 2 Ribosome 1 0.500231636992749 1 0.999536726014502 hm5C_site_25687 DeepMRMD:1;iRNA_m5C:0.999536726014502 25688 chr6 144724310 144724310 1 + G A LGG 144724309 + 144724289 144724329 41 TTACCAAATGGATAAATGCTCGATTTTCAAAGGTAACTGAG TTACCAAATGGATAAATGCTCAATTTTCAAAGGTAACTGAG < 41bp 1 0.0694063439946827 1 0.0900899767875671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144724309 chr6:144724310 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_25008 0 0 1 0 2 Nucleus 1 0.500231646060392 1 0.999536707879215 hm5C_site_25688 DeepMRMD:1;iRNA_m5C:0.999536707879215 25689 chr11 10783517 10783517 1 + C T LGG 10783524 + 10783504 10783544 41 TTAAAAATGGTGTCCAGCTTCTTTCCAGAGCCTATACTATT TTAAAAATGGTGTTCAGCTTCTTTCCAGAGCCTATACTATT < 41bp 1 0.037820110595125 1 0.066793829202652 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTR9 ENSG00000198730 CDS Human protein_coding chr11:10783524 chr11:10783517 synonymous SNV . 0 14 hm5C_associated_SNPs_25009 0 0 1 0 2 Cytosol 1 0.500231677930873 1 0.999536644138253 hm5C_site_25689 DeepMRMD:1;iRNA_m5C:0.999536644138253 25690 chrX 73046569 73046569 1 + A T LGG 73046568 - 73046548 73046588 41 GACCCAAGCGAAAAAGGTATCTCAAGACTAACGGCCGGAAT GACCCAAGCGAAAAAGGTAACTCAAGACTAACGGCCGGAAT < 41bp 1 0.673155702069676 1 0.327302992343903 experiment 0.653688595860648 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046568 chrX:73046569 . . 0 20 hm5C_associated_SNPs_25010 0 0 1 1 0 unknown 1 0.500231651567521 1 0.999536696864957 hm5C_site_25690 DeepMRMD:1;iRNA_m5C:0.999536696864957 25691 chrX 73046569 73046569 1 + A T LGG 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTAACTCA < 41bp 1 0.0854333138305165 1 0.175921678543091 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046569 . . 0 37 hm5C_associated_SNPs_25011 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_25691 DeepMRMD:1;iRNA_m5C:0.999536712157816 25692 chr19 11141499 11141499 1 + G A LGG 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGAGGGGCTCGGCCTGAACCTCCAGTCGGC < 41bp 1 0.412282170290686 1 0.465484797954559 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141499 nonsynonymous SNV 0.981 4 14 hm5C_associated_SNPs_25012 0 0 1 0 2 Nucleus 1 0.500231643921072 1 0.999536712157856 hm5C_site_25692 DeepMRMD:1;iRNA_m5C:0.999536712157856 25693 chrX 107821211 107821211 1 + A T LGG 107821198 + 107821178 107821218 41 TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGG TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGTCCTAAGG < 41bp 1 0.533248880889058 1 0.665052175521851 experiment 0.933502238221884 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821198 chrX:107821211 synonymous SNV . 0 34 hm5C_associated_SNPs_25013 0 0 1 0 2 Ribosome 1 0.500231643921092 0.669895648956298 0.999536712157815 hm5C_site_25693 DeepMRMD:0.669895648956298;iRNA_m5C:0.999536712157815 25694 chrX 107821211 107821211 1 + A T LGG 107821203 + 107821183 107821223 41 GCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT GCCCTCCTGGTCCACCAGGACTTCCAGGTCCTAAGGTAATT < 41bp 1 0.0324155785452544 1 0.0243670344352722 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821203 chrX:107821211 synonymous SNV . 0 29 hm5C_associated_SNPs_25014 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25694 DeepMRMD:1;iRNA_m5C:0.999536712157815 25695 chr1 161326623 161326623 1 + G A LGG 161326622 + 161326602 161326642 41 ATCATACCTGGAATGGGATCCGACACTTGGTAAGTTAATTC ATCATACCTGGAATGGGATCCAACACTTGGTAAGTTAATTC < 41bp 1 0.511352111978677 1 0.393554419279099 experiment 0.977295776042647 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHC ENSG00000143252 CDS Human protein_coding chr1:161326622 chr1:161326623 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_25015 1 0 1 0 1 Ribosome 1 0.500231643554977 1 0.999536712890045 hm5C_site_25695 DeepMRMD:1;iRNA_m5C:0.999536712890045 not provided not provided 25696 chr1 248039261 248039261 1 + C T LGG 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGCCGACCTGTGCAGTGTGCA < 41bp 1 0.658704730110725 1 0.174125611782074 experiment 0.682590539778549 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039261 nonsynonymous SNV 0.007 3 31 hm5C_associated_SNPs_25016 0 0 0 0 2 Cytosol 1 0.500233128023707 1 0.999533743952586 hm5C_site_25696 DeepMRMD:1;iRNA_m5C:0.999533743952586 25697 chr7 6631413 6631413 1 + G A LGG 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACAGCCAGATGAGCT < 41bp 1 0.144566185027081 1 0.122439563274384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631413 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_25017 0 0 1 0 2 chromatin 1 0.500231630060753 1 0.999536739878494 hm5C_site_25697 DeepMRMD:1;iRNA_m5C:0.999536739878494 25698 chr7 6631413 6631413 1 + G A LGG 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACAGCCAGATGAGCTT < 41bp 1 0.423597296828801 1 0.506302118301392 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631413 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_25018 0 0 1 0 2 chromatin 1 0.50023164392123 0.987395763397216 0.99953671215754 hm5C_site_25698 DeepMRMD:0.987395763397216;iRNA_m5C:0.99953671215754 25699 chr5 54720585 54720585 1 + C T LGG 54720581 + 54720561 54720601 41 CAAGAGAGATATTGTGTTTGCTGCCAGCCTCTACTTGTAGA CAAGAGAGATATTGTGTTTGCTGCTAGCCTCTACTTGTAGA < 41bp 1 0.356789904084647 1 0.0976587235927582 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54720581 chr5:54720585 synonymous SNV . 0 25 hm5C_associated_SNPs_25019 0 0 1 0 1 Nucleus 1 0.500231643921454 1 0.999536712157092 hm5C_site_25699 DeepMRMD:1;iRNA_m5C:0.999536712157092 25700 chr14 24901559 24901559 1 + G A LGG 24901541 + 24901521 24901561 41 GCCTCTCCTCCGAGGGTGCCCAGCCCTCCACCTGCACCGGA GCCTCTCCTCCGAGGGTGCCCAGCCCTCCACCTGCACCAGA < 41bp 1 0.537813998701959 1 0.096100777387619 experiment 0.924372002596083 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KHNYN ENSG00000100441 CDS Human protein_coding chr14:24901541 chr14:24901559 synonymous SNV . 0 39 hm5C_associated_SNPs_25020 0 0 0 0 0 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_25700 DeepMRMD:1;iRNA_m5C:0.999536712157813 25701 chr2 85852729 85852729 1 + G A LGG 85852718 + 85852698 85852738 41 GCAAACTTGGACAAGCAAGCCAAATTGTCCCGGGCATATGA GCAAACTTGGACAAGCAAGCCAAATTGTCCCAGGCATATGA < 41bp 1 0.382869302174902 1 0.176977515220642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP39 ENSG00000168883 CDS Human protein_coding chr2:85852718 chr2:85852729 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_25022 0 0 1 0 2 Cytosol 1 0.500231565339372 1 0.999536869321256 hm5C_site_25701 DeepMRMD:1;iRNA_m5C:0.999536869321256 25702 chr12 57588464 57588464 1 + G A LGG 57588474 + 57588454 57588494 41 TGAACATGGCGAGGACGAGACCCACTGCAGTGAGTGACCAC TGAACATGGCAAGGACGAGACCCACTGCAGTGAGTGACCAC < 41bp 1 0.0336867989449096 1 0.0297261476516724 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57588474 chr12:57588464 nonsynonymous SNV 0.990 1 11 hm5C_associated_SNPs_25023 0 0 1 0 1 Exosome 1 0.500231643933417 1 0.999536712133166 hm5C_site_25702 DeepMRMD:1;iRNA_m5C:0.999536712133166 25703 chr19 36218411 36218411 1 + C T LGG 36218408 + 36218388 36218428 41 CTGCGGACCGTGTGCTGGGGCAGCGCAGCCCCGCTGGCGAG CTGCGGACCGTGTGCTGGGGCAGTGCAGCCCCGCTGGCGAG < 41bp 1 0.380180767390552 1 0.360568225383759 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218408 chr19:36218411 nonsynonymous SNV 0.019 1 24 hm5C_associated_SNPs_25024 0 0 1 0 1 chromatin 1 0.500231643931669 1 0.999536712136663 hm5C_site_25703 DeepMRMD:1;iRNA_m5C:0.999536712136663 25704 chr19 17313045 17313045 1 + A C LGG 17313031 + 17313011 17313051 41 GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCACCCTCTT < 41bp 1 0.183103505775339 1 0.0766319036483765 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17313031 chr19:17313045 nonsynonymous SNV 0.998 5 35 hm5C_associated_SNPs_25025 0 0 1 0 1 Nucleus 1 0.500231809656725 1 0.99953638068655 hm5C_site_25704 DeepMRMD:1;iRNA_m5C:0.99953638068655 25705 chr2 97875420 97875420 1 + T G LGG 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGGCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC < 41bp 1 0.317724542198913 1 0.323364585638046 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875420 nonsynonymous SNV 0.005 1 5 hm5C_associated_SNPs_25026 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_25705 DeepMRMD:1;iRNA_m5C:0.999536712157816 25706 chr3 47891524 47891524 1 + G C LGG 47891507 + 47891487 47891527 41 CAGCGAGCTGGCTGCACTTCCCCCCAGCGTACAGGAGGAGC CAGCGAGCTGGCTGCACTTCCCCCCAGCGTACAGGAGCAGC < 41bp 1 0.273003016172805 1 0.128994762897491 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47891507 chr3:47891524 nonsynonymous SNV 0.933 0 38 hm5C_associated_SNPs_25027 0 0 1 0 0 Cytosol 1 0.500231622409565 1 0.99953675518087 hm5C_site_25706 DeepMRMD:1;iRNA_m5C:0.99953675518087 25707 chr22 40762494 40762494 1 + G A LGG 40762482 + 40762462 40762502 41 AGGTGTATCCCCTGTTAAAACCATATGAAAGCGTGATGAAG AGGTGTATCCCCTGTTAAAACCATATGAAAGCATGATGAAG < 41bp 1 0.346411937417102 1 0.215944737195969 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ADSL ENSG00000239900 CDS Human protein_coding chr22:40762482 chr22:40762494 nonsynonymous SNV 0.706 2 33 hm5C_associated_SNPs_25028 0 0 1 0 1 Ribosome 1 0.500231643921089 1 0.999536712157823 hm5C_site_25707 DeepMRMD:1;iRNA_m5C:0.999536712157823 25708 chr2 217364056 217364056 1 + C T LGG 217364052 + 217364032 217364072 41 GGGACCCGCTATGGGGCCTCCCTCCGGAAAATGGTGAAGAA GGGACCCGCTATGGGGCCTCCCTCTGGAAAATGGTGAAGAA < 41bp 1 0.186668711547187 1 0.190221905708313 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364052 chr2:217364056 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_25029 0 0 1 0 2 Cytosol 1 0.500231643921104 1 0.999536712157791 hm5C_site_25708 DeepMRMD:1;iRNA_m5C:0.999536712157791 25709 chr13 24871562 24871562 1 + C T LGG 24871549 + 24871529 24871569 41 AATTGATTCATTCTGGGGAGCTGACCAAAATCACTAAGCAA AATTGATTCATTCTGGGGAGCTGACCAAAATCATTAAGCAA < 41bp 1 0.063607976359141 1 0.178893625736237 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24871549 chr13:24871562 nonsynonymous SNV 0.371 0 34 hm5C_associated_SNPs_25030 0 0 1 0 0 Cytosol 1 0.500231643909661 1 0.999536712180679 hm5C_site_25709 DeepMRMD:1;iRNA_m5C:0.999536712180679 25710 chr2 32824921 32824921 1 + G A LGG 32824918 + 32824898 32824938 41 TCTTGTGAATCTAGAGACAACTGGTGGTCATAGCGTGCGAT TCTTGTGAATCTAGAGACAACTGATGGTCATAGCGTGCGAT < 41bp 1 0.116399671187909 1 0.143539130687714 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824918 chr2:32824921 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_25031 0 0 1 0 1 Nucleus 1 0.500231643977614 1 0.999536712044773 hm5C_site_25710 DeepMRMD:1;iRNA_m5C:0.999536712044773 25711 chr2 32824921 32824921 1 + G A LGG 32824931 + 32824911 32824951 41 GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCT GAGACAACTGATGGTCATAGCGTGCGATTCAATCCAAACCT < 41bp 1 0.103540578188235 1 0.527564227581024 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824931 chr2:32824921 nonsynonymous SNV 0.995 4 11 hm5C_associated_SNPs_25032 0 0 1 0 1 Nucleus 1 0.500230874976969 0.944871544837952 0.999538250046062 hm5C_site_25711 DeepMRMD:0.944871544837952;iRNA_m5C:0.999538250046062 25712 chr19 19655235 19655235 1 + C T LGG 19655244 + 19655224 19655264 41 GACCTGCGCTTCGTGGACAGCGACGGCGAGCTGGCTCCACT GACCTGCGCTTTGTGGACAGCGACGGCGAGCTGGCTCCACT < 41bp 1 0.563229742225776 1 0.57361364364624 experiment 0.873540515548449 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19655244 chr19:19655235 synonymous SNV . 0 12 hm5C_associated_SNPs_25033 0 0 0 0 0 exosome 1 0.500231778712529 0.85277271270752 0.999536442574942 hm5C_site_25712 DeepMRMD:0.85277271270752;iRNA_m5C:0.999536442574942 25713 chr10 3155622 3155622 1 + C T LGG 3155619 + 3155599 3155639 41 ACCCGCGGCTGGGATGAACGCAGCCGTACGCTCAGCTGTGC ACCCGCGGCTGGGATGAACGCAGTCGTACGCTCAGCTGTGC < 41bp 1 0.524140058814917 1 0.556307315826416 experiment 0.951719882370165 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3155619 chr10:3155622 nonsynonymous SNV 0.216 3 24 hm5C_associated_SNPs_25034 0 0 1 0 1 Nucleus 1 0.50023164392933 0.887385368347168 0.99953671214134 hm5C_site_25713 DeepMRMD:0.887385368347168;iRNA_m5C:0.99953671214134 25714 chr7 55259451 55259451 1 + G A LGG 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCAA < 41bp 1 0.081600611714254 1 0.254955679178238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259451 nonsynonymous SNV 0.962 2 40 hm5C_associated_SNPs_25035 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_25714 DeepMRMD:1;iRNA_m5C:0.999536712157812 25715 chr18 7955215 7955215 1 + C T LGG 7955214 + 7955194 7955234 41 ACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTG ACTCCATCAATGGGGATGGGCTCATTGTGGCCCGAGAGGTG < 41bp 1 0.229973789971932 1 0.182594656944275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955214 chr18:7955215 nonsynonymous SNV 0.953 4 22 hm5C_associated_SNPs_25036 0 0 0 0 1 Nucleus 1 0.500231648937151 1 0.999536702125699 hm5C_site_25715 DeepMRMD:1;iRNA_m5C:0.999536702125699 25716 chr18 7955215 7955215 1 + C T LGG 7955216 + 7955196 7955236 41 TCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGA TCCATCAATGGGGATGGGCTCATTGTGGCCCGAGAGGTGGA < 41bp 1 0.146952422474465 1 0.279243618249893 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955216 chr18:7955215 nonsynonymous SNV 0.953 4 20 hm5C_associated_SNPs_25037 0 0 0 0 1 Nucleus 1 0.500231643858328 1 0.999536712283344 hm5C_site_25716 DeepMRMD:1;iRNA_m5C:0.999536712283344 25717 chr18 7955215 7955215 1 + C T LGG 7955224 + 7955204 7955244 41 TGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCA TGGGGATGGGCTCATTGTGGCCCGAGAGGTGGAGTACTGCA < 41bp 1 0.518980161630113 1 0.158620029687881 experiment 0.962039676739775 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955224 chr18:7955215 nonsynonymous SNV 0.953 4 12 hm5C_associated_SNPs_25038 0 0 0 0 1 Nucleus 1 0.50023164392248 1 0.99953671215504 hm5C_site_25717 DeepMRMD:1;iRNA_m5C:0.99953671215504 25718 chr18 7955215 7955215 1 + C T LGG 7955225 + 7955205 7955245 41 GGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCAC GGGGATGGGCTCATTGTGGCCCGAGAGGTGGAGTACTGCAC < 41bp 1 0.299826090512485 1 0.519174039363861 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955225 chr18:7955215 nonsynonymous SNV 0.953 4 11 hm5C_associated_SNPs_25039 0 0 0 0 1 Nucleus 1 0.500231640140876 0.961651921272278 0.999536719718247 hm5C_site_25718 DeepMRMD:0.961651921272278;iRNA_m5C:0.999536719718247 25719 chr18 7955215 7955215 1 + C T LGG 7955226 + 7955206 7955246 41 GGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACG GGGATGGGCTCATTGTGGCCCGAGAGGTGGAGTACTGCACG < 41bp 1 0.680919777922695 1 0.573129296302795 experiment 0.63816044415461 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955226 chr18:7955215 nonsynonymous SNV 0.953 4 10 hm5C_associated_SNPs_25040 0 0 0 0 1 Nucleus 1 0.500231644307181 0.85374140739441 0.999536711385637 hm5C_site_25719 DeepMRMD:0.85374140739441;iRNA_m5C:0.999536711385637 25720 chr3 33887073 33887073 1 + G A LGG 33887074 + 33887054 33887094 41 CCAGCAAAGACCATGCAGGGCAGTGAGGTAAGAAGGACACT CCAGCAAAGACCATGCAGGACAGTGAGGTAAGAAGGACACT < 41bp 1 0.343879419223548 1 0.147157996892929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33887074 chr3:33887073 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_25041 0 0 1 0 1 Nucleus 1 0.500225147615773 1 0.999549704768454 hm5C_site_25720 DeepMRMD:1;iRNA_m5C:0.999549704768454 25721 chr2 54871561 54871561 1 + C T LGG 54871546 + 54871526 54871566 41 TTACATAAAATGTGGGAAGTCCTTGAATCCACTACCCAGAC TTACATAAAATGTGGGAAGTCCTTGAATCCACTACTCAGAC < 41bp 1 0.0344108096588129 1 0.0932356417179108 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54871546 chr2:54871561 synonymous SNV . 0 36 hm5C_associated_SNPs_25042 0 0 1 0 0 Nucleus 1 0.500231643902542 1 0.999536712194915 hm5C_site_25721 DeepMRMD:1;iRNA_m5C:0.999536712194915 25722 chr3 158383135 158383135 1 + G A LGG 158383132 + 158383112 158383152 41 TTCTTCTTTTAAAGAACGATCTGGAAAAATTTTCAAAAGGT TTCTTCTTTTAAAGAACGATCTGAAAAAATTTTCAAAAGGT < 41bp 1 0.407599924166842 1 0.460764467716217 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GFM1 ENSG00000168827 CDS Human protein_coding chr3:158383132 chr3:158383135 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_25043 0 0 0 0 1 Nucleus 1 0.500231569853434 1 0.999536860293132 hm5C_site_25722 DeepMRMD:1;iRNA_m5C:0.999536860293132 25723 chr1 28099831 28099831 1 + C T LGG 28099839 + 28099819 28099859 41 ATGTCATACGGTCCCTTAGACATGTACCGGAACCCGGGGCC ATGTCATACGGTTCCTTAGACATGTACCGGAACCCGGGGCC < 41bp 1 0.606196421766729 1 0.28160297870636 experiment 0.787607156466543 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099839 chr1:28099831 nonsynonymous SNV 0.984 3 13 hm5C_associated_SNPs_25044 0 0 1 0 0 Ribosome 1 0.500231643921064 1 0.999536712157873 hm5C_site_25723 DeepMRMD:1;iRNA_m5C:0.999536712157873 25724 chr9 137666723 137666723 1 + G A LGG 137666716 + 137666696 137666736 41 TGGTTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTA TGGTTTTAGGGTCCACCTGGCCCCCAGAGTCCGATTGGCTA < 41bp 1 0.0327041088213173 1 0.0358067452907562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666716 chr9:137666723 nonsynonymous SNV 0.971 4 28 hm5C_associated_SNPs_25045 0 0 0 0 1 Nucleus 1 0.500231643921432 1 0.999536712157135 hm5C_site_25724 DeepMRMD:1;iRNA_m5C:0.999536712157135 25725 chr9 137666723 137666723 1 + G A LGG 137666717 + 137666697 137666737 41 GGTTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTAC GGTTTTAGGGTCCACCTGGCCCCCAGAGTCCGATTGGCTAC < 41bp 1 0.441001046289643 1 0.316171109676361 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666717 chr9:137666723 nonsynonymous SNV 0.971 4 27 hm5C_associated_SNPs_25046 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25725 DeepMRMD:1;iRNA_m5C:0.999536712157815 25726 chr9 137666723 137666723 1 + G A LGG 137666718 + 137666698 137666738 41 GTTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACC GTTTTAGGGTCCACCTGGCCCCCAGAGTCCGATTGGCTACC < 41bp 1 0.117699620685092 1 0.0502212643623352 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666718 chr9:137666723 nonsynonymous SNV 0.971 4 26 hm5C_associated_SNPs_25047 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25726 DeepMRMD:1;iRNA_m5C:0.999536712157815 25727 chr9 137666723 137666723 1 + G A LGG 137666719 + 137666699 137666739 41 TTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCC TTTTAGGGTCCACCTGGCCCCCAGAGTCCGATTGGCTACCC < 41bp 1 0.42942430442204 1 0.291112184524536 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666719 chr9:137666723 nonsynonymous SNV 0.971 4 25 hm5C_associated_SNPs_25048 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25727 DeepMRMD:1;iRNA_m5C:0.999536712157815 25728 chr9 137666723 137666723 1 + G A LGG 137666720 + 137666700 137666740 41 TTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCCA TTTAGGGTCCACCTGGCCCCCAGAGTCCGATTGGCTACCCA < 41bp 1 0.309446229829622 1 0.718374788761139 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666720 chr9:137666723 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_25049 0 0 0 0 1 Nucleus 1 0.500231643921092 0.563250422477722 0.999536712157815 hm5C_site_25728 DeepMRMD:0.563250422477722;iRNA_m5C:0.999536712157815 25729 chr7 44836377 44836377 1 + C T LGG 44836378 + 44836358 44836398 41 TCGACGGCGAGCCCTTGGGCCGCGTCTCCTTTGAGGTCGGG TCGACGGCGAGCCCTTGGGTCGCGTCTCCTTTGAGGTCGGG < 41bp 1 0.625478955428258 1 0.119342029094696 experiment 0.749042089143485 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPIA ENSG00000196262 CDS Human protein_coding chr7:44836378 chr7:44836377 synonymous SNV . 0 20 hm5C_associated_SNPs_25050 0 0 1 0 1 Ribosome 1 0.500231209677492 1 0.999537580645017 hm5C_site_25729 DeepMRMD:1;iRNA_m5C:0.999537580645017 25730 chr22 40661411 40661411 1 + G A LGG 40661395 + 40661375 40661415 41 TTGAACTTAAGTTCACCAAACCCCATGGAGAATAAGGGAAT TTGAACTTAAGTTCACCAAACCCCATGGAGAATAAGAGAAT < 41bp 1 0.125331867413332 1 0.112174212932587 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40661395 chr22:40661411 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_25051 0 0 1 0 0 Cytosol 1 0.500231629837597 1 0.999536740324806 hm5C_site_25730 DeepMRMD:1;iRNA_m5C:0.999536740324806 25731 chr19 50158054 50158054 1 + C T LGG 50158043 + 50158023 50158063 41 CTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCGGGCT CTGGGGGGCTGCGGTTCGACCCCCCCCACCCTCACCGGGCT < 41bp 1 0.141475448205171 1 0.172426342964172 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50158043 chr19:50158054 nonsynonymous SNV 0.994 4 32 hm5C_associated_SNPs_25052 0 0 1 0 1 Cytosol 1 0.500231644280644 1 0.999536711438713 hm5C_site_25731 DeepMRMD:1;iRNA_m5C:0.999536711438713 25732 chr17 77757722 77757722 1 + C T LGG 77757717 + 77757697 77757737 41 CCAAACCCGAGCTGAAGGATCCCATCCGGAAGAAGCGGGGA CCAAACCCGAGCTGAAGGATCCCATTCGGAAGAAGCGGGGA < 41bp 1 0.165446212342449 1 0.141133219003677 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77757717 chr17:77757722 synonymous SNV . 0 26 hm5C_associated_SNPs_25054 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_25732 DeepMRMD:1;iRNA_m5C:0.999536712157815 25733 chr2 160031627 160031627 1 + C T LGG 160031614 + 160031594 160031634 41 AGCCCCAACTACAGAGCATGCTGAGCCTCCGATCCTGTGTG AGCCCCAACTACAGAGCATGCTGAGCCTCCGATTCTGTGTG < 41bp 1 0.508748840783648 1 0.156260877847672 experiment 0.982502318432703 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160031614 chr2:160031627 nonsynonymous SNV 0.968 4 34 hm5C_associated_SNPs_25055 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25733 DeepMRMD:1;iRNA_m5C:0.999536712157815 25734 chr17 7838346 7838346 1 + C T LGG 7838362 + 7838342 7838382 41 CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC CAGCTCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC < 41bp 1 0.201749683144536 1 0.109773278236389 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7838362 chr17:7838346 synonymous SNV . 0 5 hm5C_associated_SNPs_25056 0 0 1 0 1 Nucleus 1 0.500231643899158 1 0.999536712201684 hm5C_site_25734 DeepMRMD:1;iRNA_m5C:0.999536712201684 25735 chr16 2811732 2811732 1 + G A LGG 2811746 + 2811726 2811766 41 AACTCGGGACCGTTCACCACCTAAGTCTCCCGAGAAACTTC AACTCGAGACCGTTCACCACCTAAGTCTCCCGAGAAACTTC < 41bp 1 0.417684856590996 1 0.148360967636108 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2811746 chr16:2811732 synonymous SNV . 0 7 hm5C_associated_SNPs_25057 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_25735 DeepMRMD:1;iRNA_m5C:0.999536712157815 25736 chr16 83813722 83813722 1 + C T LGG 83813711 + 83813691 83813731 41 TGTAGTCATTTTGGGAGCATCAGATAAGGATCTTCACCCGA TGTAGTCATTTTGGGAGCATCAGATAAGGATTTTCACCCGA < 41bp 1 0.259737132822913 1 0.535329878330231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:83813711 chr16:83813722 nonsynonymous SNV 0.996 2 32 hm5C_associated_SNPs_25059 0 0 0 0 1 Nucleus 1 0.500231643921093 0.929340243339538 0.999536712157814 hm5C_site_25736 DeepMRMD:0.929340243339538;iRNA_m5C:0.999536712157814 25737 chr19 5691425 5691425 1 + C T LGG 5691407 + 5691387 5691427 41 GCCCCGTACGAGCGGCGCGCCATGGAGTTACTGAAGGTCTC GCCCCGTACGAGCGGCGCGCCATGGAGTTACTGAAGGTTTC < 41bp 1 0.382091069519315 1 0.30011573433876 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691407 chr19:5691425 synonymous SNV . 0 39 hm5C_associated_SNPs_25060 0 0 1 0 0 Ribosome 1 0.500231643921154 1 0.999536712157691 hm5C_site_25737 DeepMRMD:1;iRNA_m5C:0.999536712157691 25738 chr19 5691425 5691425 1 + C T LGG 5691427 + 5691407 5691447 41 CATGGAGTTACTGAAGGTCTCCAAGGACAAACGGGCCCTCA CATGGAGTTACTGAAGGTTTCCAAGGACAAACGGGCCCTCA < 41bp 1 0.434857318641319 1 0.842389583587646 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691427 chr19:5691425 synonymous SNV . 0 19 hm5C_associated_SNPs_25061 0 0 1 0 0 Ribosome 1 0.500231643921256 0.315220832824708 0.999536712157487 hm5C_site_25738 DeepMRMD:0.315220832824708;iRNA_m5C:0.999536712157487 25739 chr19 42729929 42729929 1 + C T LGG 42729916 + 42729896 42729936 41 CTCCAAGTCCTTTGCCTCAGCTTCCCGGCTGTCCCGGCACC CTCCAAGTCCTTTGCCTCAGCTTCCCGGCTGTCTCGGCACC < 41bp 1 0.155763645041989 1 0.0794595181941986 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF526 ENSG00000167625 CDS Human protein_coding chr19:42729916 chr19:42729929 synonymous SNV . 0 34 hm5C_associated_SNPs_25062 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25739 DeepMRMD:1;iRNA_m5C:0.999536712157815 25740 chr2 207175003 207175003 1 + C T LGG 207175004 + 207174984 207175024 41 TGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGAG TGGCCTTAGATAAACCATGTCATCGTCATCCTCCAGCAGAG < 41bp 1 0.328141621586253 1 0.100830912590027 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207175004 chr2:207175003 synonymous SNV . 0 20 hm5C_associated_SNPs_25063 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_25740 DeepMRMD:1;iRNA_m5C:0.999536712157815 25741 chr20 330377 330377 1 + C T LGG 330383 + 330363 330403 41 CGCTCCTACCTGCACCTCTTCTATGAGGACTGTGCAGGCAC CGCTCCTACCTGCATCTCTTCTATGAGGACTGTGCAGGCAC < 41bp 1 0.343561938087152 1 0.0899324119091034 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330383 chr20:330377 synonymous SNV . 0 15 hm5C_associated_SNPs_25064 0 0 1 0 2 cytosol 1 0.50023164391896 1 0.999536712162079 hm5C_site_25741 DeepMRMD:1;iRNA_m5C:0.999536712162079 25742 chr20 330377 330377 1 + C T LGG 330392 + 330372 330412 41 CTGCACCTCTTCTATGAGGACTGTGCAGGCACTGCTCTCAG CTGCATCTCTTCTATGAGGACTGTGCAGGCACTGCTCTCAG < 41bp 1 0.386863581078483 1 0.0507500469684601 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330392 chr20:330377 synonymous SNV . 0 6 hm5C_associated_SNPs_25065 0 0 1 0 2 cytosol 1 0.50023164393797 1 0.99953671212406 hm5C_site_25742 DeepMRMD:1;iRNA_m5C:0.99953671212406 25743 chr12 105543469 105543469 1 + C T LGG 105543489 + 105543469 105543509 41 CCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG TCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG < 41bp 1 0.147578579229577 1 0.0533016920089722 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105543489 chr12:105543469 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_25066 0 0 0 0 2 unknown 1 0.500231643920987 1 0.999536712158027 hm5C_site_25743 DeepMRMD:1;iRNA_m5C:0.999536712158027 25744 chr7 150761801 150761801 1 + G A LGG 150761806 + 150761786 150761826 41 GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC GCCAGCGAGGCTGAGAGGGCCCGGGCTCTCACTCAGCCGTC < 41bp 1 0.556958067965951 1 0.323626428842545 experiment 0.886083864068098 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761806 chr7:150761801 nonsynonymous SNV 0.137 0 16 hm5C_associated_SNPs_25068 0 0 1 0 1 Ribosome 1 0.500231643929792 1 0.999536712140415 hm5C_site_25744 DeepMRMD:1;iRNA_m5C:0.999536712140415 25745 chr3 50131259 50131259 1 + G A LGG 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAACAAGACCATCATGCTGCGCGGCCTTCCCAT < 41bp 1 0.418122029996041 1 0.216083914041519 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131259 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_25069 0 0 1 0 2 Cytosol 1 0.50023164382448 1 0.99953671235104 hm5C_site_25745 DeepMRMD:1;iRNA_m5C:0.99953671235104 25746 chrX 70779241 70779241 1 + C T LGG 70779251 + 70779231 70779271 41 CTTATGCAGTCTATTCCAGGCATGCACAATCCTGATAAATT CTTATGCAGTTTATTCCAGGCATGCACAATCCTGATAAATT < 41bp 1 0.0660741512451955 1 0.0562679171562195 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70779251 chrX:70779241 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_25070 0 0 1 0 1 Nucleus 1 0.500231648055163 1 0.999536703889673 hm5C_site_25746 DeepMRMD:1;iRNA_m5C:0.999536703889673 25747 chr12 110770427 110770427 1 + G A LGG 110770433 + 110770413 110770453 41 GGACAGAGTGGAAGGTGATACTTGTTCCCTTAATGAGTTTA GGACAGAGTGGAAGATGATACTTGTTCCCTTAATGAGTTTA < 41bp 1 0.177084683476781 1 0.0827886164188385 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110770433 chr12:110770427 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_25071 0 0 1 0 1 Nucleus 1 0.50023164392109 1 0.99953671215782 hm5C_site_25747 DeepMRMD:1;iRNA_m5C:0.99953671215782 25748 chr1 164790803 164790803 1 + G A LGG 164790815 + 164790795 164790835 41 ATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG ATCAGCCAAACAGGAGGATACAGTGATGGACTCGCAGCCAG < 41bp 1 0.633749889504532 1 0.370991379022598 experiment 0.732500220990937 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790815 chr1:164790803 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_25072 0 0 1 0 1 Ribosome 1 0.50023164392085 1 0.999536712158301 hm5C_site_25748 DeepMRMD:1;iRNA_m5C:0.999536712158301 25749 chr11 68115614 68115614 1 + C T LGG 68115603 + 68115583 68115623 41 GAAGCTGTACTGGACGGACTCAGAGACCAACCGCATCGAGG GAAGCTGTACTGGACGGACTCAGAGACCAACTGCATCGAGG < 41bp 1 0.666604947243917 1 0.759223818778992 experiment 0.666790105512165 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68115603 chr11:68115614 nonsynonymous SNV 0.983 4 32 hm5C_associated_SNPs_25073 0 0 0 0 1 Endoplasmic reticulum 1 0.500231581269512 0.481552362442016 0.999536837460976 hm5C_site_25749 DeepMRMD:0.481552362442016;iRNA_m5C:0.999536837460976 25750 chr8 142176415 142176415 1 + C T LGG 142176432 + 142176412 142176452 41 TGCCATGCCTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC TGCTATGCCTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC < 41bp 1 0.467973773795429 1 0.878114759922028 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142176432 chr8:142176415 synonymous SNV . 0 4 hm5C_associated_SNPs_25074 0 0 0 0 1 Nucleus 1 0.500231615260173 0.243770480155944 0.999536769479655 hm5C_site_25750 DeepMRMD:0.243770480155944;iRNA_m5C:0.999536769479655 25751 chr2 3623248 3623248 1 + G A LGG 3623246 + 3623226 3623266 41 GAAGCCCAATGGCGAGAAGCCGGACGAGTTCGAGTCCGGCA GAAGCCCAATGGCGAGAAGCCGAACGAGTTCGAGTCCGGCA < 41bp 1 0.614756839772906 1 0.235012143850327 experiment 0.770486320454188 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RPS7 ENSG00000171863 CDS Human protein_coding chr2:3623246 chr2:3623248 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_25075 0 0 1 0 1 Nucleus 1 0.500231645410707 1 0.999536709178586 hm5C_site_25751 DeepMRMD:1;iRNA_m5C:0.999536709178586 25752 chr9 96859862 96859862 1 + C T LGG 96859846 + 96859826 96859866 41 TCTGCTTCATGGTTATGAGGCACGACTTCTGAAACACGTGC TCTGCTTCATGGTTATGAGGCACGACTTCTGAAACATGTGC < 41bp 1 0.600780642554311 1 0.229739814996719 experiment 0.798438714891378 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPDC1 ENSG00000158079 CDS Human protein_coding chr9:96859846 chr9:96859862 synonymous SNV . 0 37 hm5C_associated_SNPs_25076 0 0 0 0 0 Nucleus 1 0.500229184983346 1 0.999541630033309 hm5C_site_25752 DeepMRMD:1;iRNA_m5C:0.999541630033309 25753 chr6 7579661 7579661 1 + G A LGG 7579653 + 7579633 7579673 41 CCAGTTCAAAGCGAAGCTTGCGAGCCTGGAGGAGCTGAAGA CCAGTTCAAAGCGAAGCTTGCGAGCCTGAAGGAGCTGAAGA < 41bp 1 0.292891107627426 1 0.475586324930191 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579653 chr6:7579661 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_25077 0 0 1 0 0 Nucleus 1 0.50023164651971 1 0.99953670696058 hm5C_site_25753 DeepMRMD:1;iRNA_m5C:0.99953670696058 25754 chr12 57552342 57552342 1 + C G LGG 57552333 + 57552313 57552353 41 CTGGACTTCCACGCTGAGACCGGCTTCATCTACTTTGCCGA CTGGACTTCCACGCTGAGACCGGCTTCATGTACTTTGCCGA < 41bp 1 0.116761421702299 1 0.399175971746445 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57552333 chr12:57552342 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_25078 0 0 0 0 1 Exosome 1 0.50023164392106 1 0.99953671215788 hm5C_site_25754 DeepMRMD:1;iRNA_m5C:0.99953671215788 25755 chr3 49210376 49210376 1 + A G LGG 49210393 + 49210373 49210413 41 CACATGGCTGGCACTGGCACCCCTGCCCACTGCCCGGGCTG CACGTGGCTGGCACTGGCACCCCTGCCCACTGCCCGGGCTG < 41bp 1 0.123344427068119 1 0.132202088832855 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49210393 chr3:49210376 synonymous SNV . 0 4 hm5C_associated_SNPs_25079 0 0 1 0 0 Cytosol 1 0.500231884922017 1 0.999536230155966 hm5C_site_25755 DeepMRMD:1;iRNA_m5C:0.999536230155966 25756 chr3 49210376 49210376 1 + A G LGG 49210394 + 49210374 49210414 41 ACATGGCTGGCACTGGCACCCCTGCCCACTGCCCGGGCTGG ACGTGGCTGGCACTGGCACCCCTGCCCACTGCCCGGGCTGG < 41bp 1 0.185391249972112 1 0.491352766752243 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49210394 chr3:49210376 synonymous SNV . 0 3 hm5C_associated_SNPs_25080 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25756 DeepMRMD:1;iRNA_m5C:0.999536712157815 25757 chrX 133511650 133511650 1 + G C LGG 133511658 + 133511638 133511678 41 TTTAAAAATCATGTCAAGCTCAGTTGAACAGAAAAAAGGGC TTTAAAAATCATCTCAAGCTCAGTTGAACAGAAAAAAGGGC < 41bp 1 0.206954761880937 1 0.302816808223724 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133511658 chrX:133511650 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_25081 0 0 1 0 1 Ribosome 1 0.500231643921097 1 0.999536712157805 hm5C_site_25757 DeepMRMD:1;iRNA_m5C:0.999536712157805 25758 chr7 55240750 55240750 1 + G A LGG 55240738 + 55240718 55240758 41 CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGGCCTCTTCA CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGACCTCTTCA < 41bp 1 0.24074758288601 1 0.390240132808685 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55240738 chr7:55240750 nonsynonymous SNV 0.430 1 33 hm5C_associated_SNPs_25082 0 0 1 0 2 Nucleus 1 0.500231643915751 1 0.999536712168498 hm5C_site_25758 DeepMRMD:1;iRNA_m5C:0.999536712168498 25759 chrX 149905114 149905114 1 + A T LGG 149905115 + 149905095 149905135 41 GTGCTTACCCAAATGCAGAACTTGTGTTCTTGGAGATCCAC GTGCTTACCCAAATGCAGATCTTGTGTTCTTGGAGATCCAC < 41bp 1 0.171604877038367 1 0.0352928638458252 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905115 chrX:149905114 nonsynonymous SNV 0.327 2 20 hm5C_associated_SNPs_25083 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25759 DeepMRMD:1;iRNA_m5C:0.999536712157815 25760 chr6 26156726 26156726 1 + T A LGG 26156707 + 26156687 26156727 41 GGCCCGCAAGTCTGCAGGTGCGGCCAAGCGCAAAGCGTCTG GGCCCGCAAGTCTGCAGGTGCGGCCAAGCGCAAAGCGTCAG < 41bp 1 0.575078346632879 1 0.245409041643143 experiment 0.849843306734243 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26156707 chr6:26156726 synonymous SNV . 0 40 hm5C_associated_SNPs_25085 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25760 DeepMRMD:1;iRNA_m5C:0.999536712157815 25761 chr17 7476160 7476160 1 + A C LGG 7476180 + 7476160 7476200 41 ATGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA CTGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA < 41bp 1 0.338396745887427 1 0.107684254646301 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476180 chr17:7476160 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_25086 0 0 1 0 1 Cytosol 1 0.50023164686205 1 0.9995367062759 hm5C_site_25761 DeepMRMD:1;iRNA_m5C:0.9995367062759 25762 chr1 154988753 154988753 1 + C T LGG 154988768 + 154988748 154988788 41 TCATGCCCGCACTGCCCAGCCCGCTTCCTGCACAGCTACGA TCATGTCCGCACTGCCCAGCCCGCTTCCTGCACAGCTACGA < 41bp 1 0.222212945864476 1 0.0889932215213776 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154988768 chr1:154988753 synonymous SNV . 0 6 hm5C_associated_SNPs_25087 0 0 1 0 1 chromatin 1 0.50023188053087 1 0.99953623893826 hm5C_site_25762 DeepMRMD:1;iRNA_m5C:0.99953623893826 25763 chr11 2424084 2424084 1 + C T LGG 2424079 + 2424059 2424099 41 CCCTCACCCCCGTCAGGCCTCCTCCCAGCCACGGTGCAGCC CCCTCACCCCCGTCAGGCCTCCTCCTAGCCACGGTGCAGCC < 41bp 1 0.0621224035417725 1 0.0526239573955536 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSSC4 ENSG00000184281 CDS Human protein_coding chr11:2424079 chr11:2424084 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_25088 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_25763 DeepMRMD:1;iRNA_m5C:0.999536712157815 25764 chr4 3319342 3319342 1 + G A LGG 3319346 + 3319326 3319366 41 TGTCCGGACCCCGAAGGGAGCCCCCCATTTGAGGCCGCTCA TGTCCGGACCCCGAAGAGAGCCCCCCATTTGAGGCCGCTCA < 41bp 1 0.11588677410766 1 0.191078871488571 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3319346 chr4:3319342 nonsynonymous SNV 0.005 1 17 hm5C_associated_SNPs_25089 0 0 1 0 0 Nucleus 1 0.50023164391712 1 0.999536712165759 hm5C_site_25764 DeepMRMD:1;iRNA_m5C:0.999536712165759 25765 chr3 108353774 108353774 1 + C T LGG 108353763 + 108353743 108353783 41 AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG AAAGTTGCTGTGTTTATTTCCATAAAATTTGTTGGAAAAAG < 41bp 1 0.181282506325386 1 0.57391232252121 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108353763 chr3:108353774 synonymous SNV . 0 32 hm5C_associated_SNPs_25090 0 0 1 0 1 Ribosome 1 0.500231642275058 0.85217535495758 0.999536715449884 hm5C_site_25765 DeepMRMD:0.85217535495758;iRNA_m5C:0.999536715449884 25766 chr12 112321472 112321472 1 + A G LGG 112321465 + 112321445 112321485 41 TTTTACTCCAAACACCACAGCCGGACTATCCCAAAGGATAT TTTTACTCCAAACACCACAGCCGGACTGTCCCAAAGGATAT < 41bp 1 0.40518433592504 1 0.108679860830307 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321465 chr12:112321472 nonsynonymous SNV 0.999 2 28 hm5C_associated_SNPs_25091 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_25766 DeepMRMD:1;iRNA_m5C:0.999536712157815 25767 chr12 112321472 112321472 1 + A G LGG 112321470 + 112321450 112321490 41 CTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAA CTCCAAACACCACAGCCGGACTGTCCCAAAGGATATGCGAA < 41bp 1 0.0637582976248679 1 0.0739153921604156 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321470 chr12:112321472 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_25092 0 0 1 0 1 chromatin 1 0.50023164392131 1 0.999536712157379 hm5C_site_25767 DeepMRMD:1;iRNA_m5C:0.999536712157379 25768 chr1 55072901 55072901 1 + G A LGG 55072914 + 55072894 55072934 41 GGACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA GGACTTCATGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA < 41bp 1 0.680455117534769 1 0.87581729888916 experiment 0.639089764930461 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55072914 chr1:55072901 nonsynonymous SNV 0.997 5 8 hm5C_associated_SNPs_25093 0 0 0 0 2 chromatin 1 0.500231643929045 0.24836540222168 0.99953671214191 hm5C_site_25768 DeepMRMD:0.24836540222168;iRNA_m5C:0.99953671214191 25769 chrX 24545692 24545692 1 + A T LGG 24545707 + 24545687 24545727 41 TTAGAACTCAATGAGAGCGACAGTTGAACTCTATGAAGACA TTAGATCTCAATGAGAGCGACAGTTGAACTCTATGAAGACA < 41bp 1 0.0536349723862703 1 0.373997569084167 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK3 ENSG00000067992 CDS Human protein_coding chrX:24545707 chrX:24545692 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_25094 0 0 1 0 1 exosome 1 0.500230498782617 1 0.999539002434765 hm5C_site_25769 DeepMRMD:1;iRNA_m5C:0.999539002434765 25770 chr2 173366600 173366600 1 + A T LGG 173366597 + 173366577 173366617 41 TGATAAAGAGAGGCTTACTTCTGATGCATAGTATTGATCTA TGATAAAGAGAGGCTTACTTCTGTTGCATAGTATTGATCTA < 41bp 1 0.312840768907993 1 0.581994831562042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173366597 chr2:173366600 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_25095 0 0 0 0 1 Nucleus 1 0.500231626304515 0.836010336875916 0.999536747390969 hm5C_site_25770 DeepMRMD:0.836010336875916;iRNA_m5C:0.999536747390969 25771 chr8 121468835 121468835 1 + A G LGG 121468848 + 121468828 121468868 41 ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTCA ATGTTGTGTCTTTAGAAGATCTCAGAAATGTTATTGACTCA < 41bp 1 0.397687680225343 1 0.261404603719711 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTBP ENSG00000172167 CDS Human protein_coding chr8:121468848 chr8:121468835 synonymous SNV . 0 8 hm5C_associated_SNPs_25096 0 0 1 0 2 membrane 1 0.500231647300969 1 0.999536705398062 hm5C_site_25771 DeepMRMD:1;iRNA_m5C:0.999536705398062 25772 chr8 17794714 17794714 1 + T C LGG 17794729 + 17794709 17794749 41 GAAAGTGATAAAAGAGTAACCAATGATATTTCTCCGGAGTC GAAAGCGATAAAAGAGTAACCAATGATATTTCTCCGGAGTC < 41bp 1 0.328998314840918 1 0.426050424575806 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17794729 chr8:17794714 synonymous SNV . 0 6 hm5C_associated_SNPs_25097 0 0 1 0 1 Nucleus 1 0.500231643921006 1 0.999536712157989 hm5C_site_25772 DeepMRMD:1;iRNA_m5C:0.999536712157989 25773 chr17 73695883 73695883 1 + C T LGG 73695888 + 73695868 73695908 41 TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAA TTTTCTGAAAGAGTTTGGAACATGTCGCCTGATGAAATCAA < 41bp 1 0.174630835671994 1 0.201193958520889 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695888 chr17:73695883 nonsynonymous SNV 0.995 1 16 hm5C_associated_SNPs_25098 0 0 1 0 2 Cytosol 1 0.500231643938168 1 0.999536712123664 hm5C_site_25773 DeepMRMD:1;iRNA_m5C:0.999536712123664 25774 chr17 73695883 73695883 1 + C T LGG 73695896 + 73695876 73695916 41 AAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC AAGAGTTTGGAACATGTCGCCTGATGAAATCAAGATCCCGC < 41bp 1 0.370187350327417 1 0.232450217008591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695896 chr17:73695883 nonsynonymous SNV 0.995 1 8 hm5C_associated_SNPs_25100 0 0 1 0 2 Cytosol 1 0.500231643921101 1 0.999536712157799 hm5C_site_25774 DeepMRMD:1;iRNA_m5C:0.999536712157799 25775 chr4 1206203 1206203 1 + G A LGG 1206214 - 1206194 1206234 41 ACGGATGGACCCTCTCCCAGCAGGTACCCTCCGGGCGTGGT ACGGATGGACCCTCTCCCAGCAGGTACCCTCTGGGCGTGGT < 41bp 1 0.62062579612734 1 0.835670471191406 experiment 0.758748407745319 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1206214 chr4:1206203 nonsynonymous SNV 0.001 3 32 hm5C_associated_SNPs_25101 0 0 1 0 2 Ribosome 1 0.5002316704009 0.328659057617188 0.999536659198201 hm5C_site_25775 DeepMRMD:0.328659057617188;iRNA_m5C:0.999536659198201 25776 chr14 100367314 100367314 1 + C G LGG 100367316 + 100367296 100367336 41 TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGTTT TCTGTGACATTGAATACTGTCCACGTCATTGGAATAGGTTT < 41bp 1 0.190884770238209 1 0.188995242118835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367316 chr14:100367314 nonsynonymous SNV 0.986 4 19 hm5C_associated_SNPs_25102 0 0 1 0 2 Nucleus 1 0.500231072385991 1 0.999537855228018 hm5C_site_25776 DeepMRMD:1;iRNA_m5C:0.999537855228018 25777 chr7 43591856 43591856 1 + C T LGG 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCTAGGGAGC < 41bp 1 0.170036835503474 1 0.337831079959869 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591856 synonymous SNV . 0 34 hm5C_associated_SNPs_25103 0 0 0 0 2 Cytosol 1 0.500226192807026 1 0.999547614385948 hm5C_site_25777 DeepMRMD:1;iRNA_m5C:0.999547614385948 25778 chr20 330364 330364 1 + G A LGG 330383 + 330363 330403 41 CGCTCCTACCTGCACCTCTTCTATGAGGACTGTGCAGGCAC CACTCCTACCTGCACCTCTTCTATGAGGACTGTGCAGGCAC < 41bp 1 0.318871234550255 1 0.058598518371582 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330383 chr20:330364 nonsynonymous SNV 0.973 2 2 hm5C_associated_SNPs_25104 0 0 1 0 1 cytosol 1 0.500231658654635 1 0.99953668269073 hm5C_site_25778 DeepMRMD:1;iRNA_m5C:0.99953668269073 25779 chr2 233674460 233674460 1 + C T LGG 233674441 + 233674421 233674461 41 CATTCCTAGGGAGAGCTGGACCAGGAACGACTGACCAGGCA CATTCCTAGGGAGAGCTGGACCAGGAACGACTGACCAGGTA < 41bp 1 0.276996482618197 1 0.189390569925308 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233674441 chr2:233674460 stopgain 0.994 1 40 hm5C_associated_SNPs_25105 0 0 1 0 2 Nucleus 1 0.500231641305505 1 0.99953671738899 hm5C_site_25779 DeepMRMD:1;iRNA_m5C:0.99953671738899 25780 chr3 39431997 39431997 1 + C T LGG 39431995 + 39431975 39432015 41 GGCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG GGCCTTTGGAAAGGGATGTCCCTTGTAAGCTGCCATCTGGG < 41bp 1 0.11226945940314 1 0.0601194500923157 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431995 chr3:39431997 nonsynonymous SNV 0.984 5 23 hm5C_associated_SNPs_25106 0 0 1 0 2 Ribosome 1 0.500232330457517 1 0.999535339084966 hm5C_site_25780 DeepMRMD:1;iRNA_m5C:0.999535339084966 25781 chrX 55033526 55033526 1 + A T LGG 55033545 + 55033525 55033565 41 AAGCCTCTCCTGACATAGAGCTGCCTAGCCTACCACTGATG ATGCCTCTCCTGACATAGAGCTGCCTAGCCTACCACTGATG < 41bp 1 0.31467400371972 1 0.0934478044509888 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APEX2 ENSG00000169188 CDS Human protein_coding chrX:55033545 chrX:55033526 nonsynonymous SNV 0.079 0 2 hm5C_associated_SNPs_25107 0 0 1 0 0 Ribosome 1 0.500231643919819 1 0.999536712160362 hm5C_site_25781 DeepMRMD:1;iRNA_m5C:0.999536712160362 25782 chr8 28906544 28906544 1 + C T LGG 28906525 + 28906505 28906545 41 GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACG GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGATG < 41bp 1 0.271943756841824 1 0.116386562585831 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906525 chr8:28906544 synonymous SNV . 0 40 hm5C_associated_SNPs_25108 0 0 1 0 4 Nucleus 1 0.500231643953352 1 0.999536712093297 hm5C_site_25782 DeepMRMD:1;iRNA_m5C:0.999536712093297 25783 chr8 28906544 28906544 1 + C T LGG 28906541 + 28906521 28906561 41 CACTCAAACAGTGATGATGTCGACGGGAATGACTACTCTGA CACTCAAACAGTGATGATGTCGATGGGAATGACTACTCTGA < 41bp 1 0.558069090958307 1 0.314869523048401 experiment 0.883861818083386 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906541 chr8:28906544 synonymous SNV . 0 24 hm5C_associated_SNPs_25110 0 0 1 0 4 Nucleus 1 0.500231647043913 1 0.999536705912173 hm5C_site_25783 DeepMRMD:1;iRNA_m5C:0.999536705912173 25784 chr8 28906544 28906544 1 + C T LGG 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GATGATGTCGATGGGAATGACTACTCTGAGCAGGTGAGCCC < 41bp 1 0.623631884217859 1 0.178116083145142 experiment 0.752736231564281 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906544 synonymous SNV . 0 12 hm5C_associated_SNPs_25111 0 0 1 0 4 Nucleus 1 0.500231653784874 1 0.999536692430252 hm5C_site_25784 DeepMRMD:1;iRNA_m5C:0.999536692430252 25785 chr12 125603203 125603203 1 + G A LGG 125603189 + 125603169 125603209 41 TCCCTCCTGTCTTTGCAGGTCGGCTGGATGATGTGGAACTG TCCCTCCTGTCTTTGCAGGTCGGCTGGATGATGTAGAACTG < 41bp 1 0.543848476307905 1 0.651950061321259 experiment 0.912303047384191 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125603189 chr12:125603203 stopgain 1.000 1 35 hm5C_associated_SNPs_25112 0 0 0 0 1 Ribosome 1 0.500231643921092 0.696099877357482 0.999536712157815 hm5C_site_25785 DeepMRMD:0.696099877357482;iRNA_m5C:0.999536712157815 25786 chr12 125603203 125603203 1 + G A LGG 125603220 + 125603200 125603240 41 TGTGGAACTGGATGGTGTCCCTTCTGGCCACAGGAGCGGCC TGTAGAACTGGATGGTGTCCCTTCTGGCCACAGGAGCGGCC < 41bp 1 0.306876749271409 1 0.123573511838913 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125603220 chr12:125603203 stopgain 1.000 1 4 hm5C_associated_SNPs_25113 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25786 DeepMRMD:1;iRNA_m5C:0.999536712157815 25787 chr1 26772898 26772898 1 + G A LGG 26772901 + 26772881 26772921 41 AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC AGCTGATTGCACAAGCTATACAGGCCACGAAGAACTACAAC < 41bp 1 0.501425696487407 1 0.640365958213806 experiment 0.997148607025186 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772901 chr1:26772898 nonsynonymous SNV 0.921 0 18 hm5C_associated_SNPs_25114 0 0 1 0 2 chromatin 1 0.500231788174438 0.719268083572388 0.999536423651123 hm5C_site_25787 DeepMRMD:0.719268083572388;iRNA_m5C:0.999536423651123 25788 chr1 26772898 26772898 1 + G A LGG 26772908 + 26772888 26772928 41 TGCACAAGCTGTACAGGCCACGAAGAACTACAACAAGTAAG TGCACAAGCTATACAGGCCACGAAGAACTACAACAAGTAAG < 41bp 1 0.261154904703521 1 0.444241017103195 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772908 chr1:26772898 nonsynonymous SNV 0.921 0 11 hm5C_associated_SNPs_25115 0 0 1 0 2 chromatin 1 0.500231060280864 1 0.999537879438272 hm5C_site_25788 DeepMRMD:1;iRNA_m5C:0.999537879438272 25789 chr22 39382395 39382395 1 + C T LGG 39382388 + 39382368 39382408 41 TTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA TTCGATGAAAATTATGCATTCCTGCACTGCACGCTAAAGGA < 41bp 1 0.0625820666182268 1 0.108186632394791 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382388 chr22:39382395 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_25116 0 0 0 1 2 exosome 1 0.500231820821245 1 0.999536358357509 hm5C_site_25789 DeepMRMD:1;iRNA_m5C:0.999536358357509 25790 chr11 33628229 33628229 1 + A G LGG 33628214 + 33628194 33628234 41 GAGTGACGAAGAGGAGGGAGCGGTTCTATTTGACAACTCCA GAGTGACGAAGAGGAGGGAGCGGTTCTATTTGACAGCTCCA < 41bp 1 0.122088947530234 1 0.219332814216614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33628214 chr11:33628229 nonsynonymous SNV 0.323 0 36 hm5C_associated_SNPs_25117 0 0 0 0 1 exosome 1 0.500231643921027 1 0.999536712157946 hm5C_site_25790 DeepMRMD:1;iRNA_m5C:0.999536712157946 25791 chr17 1946242 1946242 1 + G A LGG 1946262 + 1946242 1946282 41 GGACACTGACAAAGTCATCCCCTCTCAGGAGAGTGTGCAAC AGACACTGACAAAGTCATCCCCTCTCAGGAGAGTGTGCAAC < 41bp 1 0.0921800791156012 1 0.023706316947937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OVCA2 ENSG00000262664 CDS Human protein_coding chr17:1946262 chr17:1946242 synonymous SNV . 0 1 hm5C_associated_SNPs_25118 0 0 1 1 0 exosome 1 0.500233528600474 1 0.999532942799052 hm5C_site_25791 DeepMRMD:1;iRNA_m5C:0.999532942799052 25792 chr6 32947789 32947789 1 + T A LGG 32947785 + 32947765 32947805 41 ATAATCCAAGCCAGGGAGCCCTCTTTACGTGATTCAAACCC ATAATCCAAGCCAGGGAGCCCTCTATACGTGATTCAAACCC < 41bp 1 0.449897148325417 1 0.887117445468903 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32947785 chr6:32947789 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_25119 0 0 1 0 0 Cytosol 1 0.500231643921092 0.225765109062194 0.999536712157815 hm5C_site_25792 DeepMRMD:0.225765109062194;iRNA_m5C:0.999536712157815 25793 chr3 39179140 39179140 1 + G C LGG 39179132 + 39179112 39179152 41 AGCTGGCTCCTGCTGGCTGACATTTACTGCCAGGGCAGCAA AGCTGGCTCCTGCTGGCTGACATTTACTCCCAGGGCAGCAA < 41bp 1 0.18572103549094 1 0.175440669059753 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTC21A ENSG00000168026 CDS Human protein_coding chr3:39179132 chr3:39179140 nonsynonymous SNV 0.988 1 29 hm5C_associated_SNPs_25120 0 0 1 0 0 nucleus 1 0.5002316439211 1 0.999536712157799 hm5C_site_25793 DeepMRMD:1;iRNA_m5C:0.999536712157799 25794 chr16 27374364 27374364 1 + C A LGG 27374351 + 27374331 27374371 41 TCCTCCGCCGAAATGTCCTCCAGCATGGGGCAGCTGCAGCC TCCTCCGCCGAAATGTCCTCCAGCATGGGGCAGATGCAGCC < 41bp 1 0.65627617333054 1 0.476476460695267 experiment 0.68744765333892 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IL4R ENSG00000077238 CDS Human protein_coding chr16:27374351 chr16:27374364 nonsynonymous SNV 0.001 2 34 hm5C_associated_SNPs_25121 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921137 1 0.999536712157725 hm5C_site_25794 DeepMRMD:1;iRNA_m5C:0.999536712157725 25795 chr9 137708918 137708918 1 + G A LGG 137708906 + 137708886 137708926 41 TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG TACTGGTGAACCAGGTCCATCGGGGCCTCCAGAAAAAAGGG < 41bp 1 0.324274941725392 1 0.844732940196991 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137708906 chr9:137708918 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_25122 0 0 0 0 1 Nucleus 1 0.500231643921092 0.310534119606018 0.999536712157815 hm5C_site_25795 DeepMRMD:0.310534119606018;iRNA_m5C:0.999536712157815 25796 chr11 111835363 111835363 1 + C T LGG 111835377 + 111835357 111835397 41 GATCTCCGGGATGGGGTGATCCTGGCATATCTCATCGAGAT GATCTCTGGGATGGGGTGATCCTGGCATATCTCATCGAGAT < 41bp 1 0.444861243538977 1 0.391280651092529 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111835377 chr11:111835363 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_25123 0 0 1 0 2 Ribosome 1 0.500231643921032 1 0.999536712157936 hm5C_site_25796 DeepMRMD:1;iRNA_m5C:0.999536712157936 25797 chr6 26204972 26204972 1 + G C LGG 26204977 + 26204957 26204997 41 GGCATTACCAAGCCTGCCATCCGGCGCCTTGCTCGTCGCGG GGCATTACCAAGCCTCCCATCCGGCGCCTTGCTCGTCGCGG < 41bp 1 0.55990920082231 1 0.87750244140625 experiment 0.880181598355381 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIST1H4E ENSG00000198518 CDS Human other chr6:26204977 chr6:26204972 nonsynonymous SNV 0.003 0 16 hm5C_associated_SNPs_25124 0 0 1 0 0 Nucleus 1 0.500231643921092 0.2449951171875 0.999536712157815 hm5C_site_25797 DeepMRMD:0.2449951171875;iRNA_m5C:0.999536712157815 25798 chr17 14095349 14095349 1 + G C LGG 14095330 + 14095310 14095350 41 TTGCTAGCTGTGTCCTTTGCCACTTGTTGTGCTGTTCCGGG TTGCTAGCTGTGTCCTTTGCCACTTGTTGTGCTGTTCCGCG < 41bp 1 0.350265373508065 1 0.878211736679077 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control COX10 ENSG00000006695 CDS Human protein_coding chr17:14095330 chr17:14095349 nonsynonymous SNV 0.725 5 40 hm5C_associated_SNPs_25125 0 0 1 0 1 Cytosol 1 0.500312833347011 0.243576526641846 0.999374333305977 hm5C_site_25798 DeepMRMD:0.243576526641846;iRNA_m5C:0.999374333305977 25799 chr5 54654435 54654435 1 + G A LGG 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGTCTGGTCATGCTGGAAGGAGAGGAATG < 41bp 1 0.180805525191863 1 0.0550134778022766 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654435 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_25126 0 0 1 0 2 Nucleus 1 0.500231665492643 1 0.999536669014714 hm5C_site_25799 DeepMRMD:1;iRNA_m5C:0.999536669014714 25800 chr7 73731911 73731911 1 + G A LGG 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCCCCGGCCATGGGGGGAAGCA < 41bp 1 0.238116492024289 1 0.176288574934006 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731911 nonsynonymous SNV 0.952 4 29 hm5C_associated_SNPs_25127 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25800 DeepMRMD:1;iRNA_m5C:0.999536712157815 25801 chr7 73731911 73731911 1 + G A LGG 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCCCCGGCCATGGGGGGAAGCAC < 41bp 1 0.387204747886265 1 0.170654267072678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731911 nonsynonymous SNV 0.952 4 28 hm5C_associated_SNPs_25128 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25801 DeepMRMD:1;iRNA_m5C:0.999536712157815 25802 chr7 73731911 73731911 1 + G A LGG 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCCCCGGCCATGGGGGGAAGCACT < 41bp 1 0.167312530174922 1 0.660367369651794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731911 nonsynonymous SNV 0.952 4 27 hm5C_associated_SNPs_25129 0 0 0 0 1 Ribosome 1 0.500231643921093 0.679265260696412 0.999536712157814 hm5C_site_25802 DeepMRMD:0.679265260696412;iRNA_m5C:0.999536712157814 25803 chr7 73731911 73731911 1 + G A LGG 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCCGGCCATGGGGGGAAGCACTC < 41bp 1 0.31955168942729 1 0.410618305206299 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731911 nonsynonymous SNV 0.952 4 26 hm5C_associated_SNPs_25130 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25803 DeepMRMD:1;iRNA_m5C:0.999536712157815 25804 chr21 17250117 17250117 1 + A G LGG 17250131 + 17250111 17250151 41 TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG TAAGAAGTTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG < 41bp 1 0.491802562524476 1 0.331871449947357 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP25 ENSG00000155313 CDS Human protein_coding chr21:17250131 chr21:17250117 synonymous SNV . 0 7 hm5C_associated_SNPs_25132 0 0 1 0 1 Cytosol 1 0.500231615993871 1 0.999536768012258 hm5C_site_25804 DeepMRMD:1;iRNA_m5C:0.999536768012258 25805 chr8 102381123 102381123 1 + C T LGG 102381132 + 102381112 102381152 41 TCTTGATTCCACGTTCCCTCCACAAAATGCCTGGCGAAGCC TCTTGATTCCATGTTCCCTCCACAAAATGCCTGGCGAAGCC < 41bp 1 0.654675744346736 1 0.53531289100647 experiment 0.690648511306529 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NACAP1 ENSG00000228224 ncRNA_exonic Human transcribed_processed_pseudogene chr8:102381132 chr8:102381123 . . 0 12 hm5C_associated_SNPs_25133 0 0 0 0 0 unknown 1 0.500231643921076 0.92937421798706 0.999536712157848 hm5C_site_25805 DeepMRMD:0.92937421798706;iRNA_m5C:0.999536712157848 25806 chr1 46295175 46295175 1 + G A LGG 46295193 + 46295173 46295213 41 TCGTCAGGAGAAGCATCAAACCTGGTTCGAATGAGAAACCA TCATCAGGAGAAGCATCAAACCTGGTTCGAATGAGAAACCA < 41bp 1 0.31139499478214 1 0.219194740056992 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46295193 chr1:46295175 synonymous SNV . 0 3 hm5C_associated_SNPs_25134 0 0 1 0 2 Ribosome 1 0.500231643921079 1 0.999536712157842 hm5C_site_25806 DeepMRMD:1;iRNA_m5C:0.999536712157842 25807 chr22 38258980 38258980 1 + G A LGG 38258983 + 38258963 38259003 41 GTTTTCTTTACAGGGGGGACCTTCCTTGGAGCAGAGGTTTG GTTTTCTTTACAGGGGGAACCTTCCTTGGAGCAGAGGTTTG < 41bp 1 0.100843687617255 1 0.376787066459656 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38258983 chr22:38258980 nonsynonymous SNV 0.992 2 18 hm5C_associated_SNPs_25135 0 0 1 0 2 Cytosol 1 0.500231644767808 1 0.999536710464384 hm5C_site_25807 DeepMRMD:1;iRNA_m5C:0.999536710464384 25808 chr19 36572456 36572456 1 + A T LGG 36572466 + 36572446 36572486 41 CACTGGCAGAAAAACATCTTCAGCAATGTGAGTGGCTTCCT CACTGGCAGATAAACATCTTCAGCAATGTGAGTGGCTTCCT < 41bp 1 0.543731982137214 1 0.291470855474472 experiment 0.912536035725572 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36572466 chr19:36572456 nonsynonymous SNV 0.977 3 11 hm5C_associated_SNPs_25136 0 0 1 0 1 Nucleus 1 0.500231717950378 1 0.999536564099244 hm5C_site_25808 DeepMRMD:1;iRNA_m5C:0.999536564099244 25809 chr1 147091685 147091685 1 + G A LGG 147091688 + 147091668 147091708 41 AAACTCTGAAATGGAAGGGCCGAATGTCCCCAACCCTGCAT AAACTCTGAAATGGAAGAGCCGAATGTCCCCAACCCTGCAT < 41bp 1 0.294057494412245 1 0.274913549423218 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCL9 ENSG00000116128 CDS Human protein_coding chr1:147091688 chr1:147091685 nonsynonymous SNV 0.974 3 18 hm5C_associated_SNPs_25138 0 0 0 0 0 Nucleus 1 0.500231643921097 1 0.999536712157805 hm5C_site_25809 DeepMRMD:1;iRNA_m5C:0.999536712157805 25810 chr9 101778341 101778341 1 + T C LGG 101778357 + 101778337 101778377 41 GCCCTCCCCCTGATGGGCCACCGCTGCCCCTGCCCACAGTG GCCCCCCCCCTGATGGGCCACCGCTGCCCCTGCCCACAGTG < 41bp 1 0.161289321249918 1 0.0749030113220215 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101778357 chr9:101778341 synonymous SNV . 0 5 hm5C_associated_SNPs_25139 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921101 1 0.999536712157798 hm5C_site_25810 DeepMRMD:1;iRNA_m5C:0.999536712157798 25811 chr1 16261678 16261678 1 + G A LGG 16261698 + 16261678 16261718 41 GCTCACGCCCCACCACCCTCCTGCTCTGCCCAGCAAACTGC ACTCACGCCCCACCACCCTCCTGCTCTGCCCAGCAAACTGC < 41bp 1 0.242516092777441 1 0.124398410320282 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16261698 chr1:16261678 synonymous SNV . 0 1 hm5C_associated_SNPs_25140 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_25811 DeepMRMD:1;iRNA_m5C:0.999536712157818 25812 chr5 131940537 131940537 1 + A G LGG 131940539 + 131940519 131940559 41 ATCGTAAGCTTATACAGGACCAGCAGGAACAGATTCAACAT ATCGTAAGCTTATACAGGGCCAGCAGGAACAGATTCAACAT < 41bp 1 0.647152134308749 1 0.273990511894226 experiment 0.705695731382502 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131940539 chr5:131940537 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_25141 0 0 1 0 1 Cytosol 1 0.50023164393017 1 0.99953671213966 hm5C_site_25812 DeepMRMD:1;iRNA_m5C:0.99953671213966 25813 chr4 77661578 77661578 1 + C T LGG 77661597 + 77661577 77661617 41 CCGCACACATCCAGTCTGGGCCGGAGGGGGCCCGGCCCAGG CTGCACACATCCAGTCTGGGCCGGAGGGGGCCCGGCCCAGG < 41bp 1 0.64151400269838 1 0.554791331291199 experiment 0.71697199460324 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661597 chr4:77661578 nonsynonymous SNV 0.000 0 2 hm5C_associated_SNPs_25142 0 0 1 0 0 Ribosome 1 0.500231643921092 0.890417337417602 0.999536712157816 hm5C_site_25813 DeepMRMD:0.890417337417602;iRNA_m5C:0.999536712157816 25814 chr4 77661578 77661578 1 + C T LGG 77661598 + 77661578 77661618 41 CGCACACATCCAGTCTGGGCCGGAGGGGGCCCGGCCCAGGC TGCACACATCCAGTCTGGGCCGGAGGGGGCCCGGCCCAGGC < 41bp 1 0.615035526592209 1 0.71822601556778 experiment 0.769928946815583 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661598 chr4:77661578 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_25143 0 0 1 0 0 Ribosome 1 0.500231643921093 0.56354796886444 0.999536712157815 hm5C_site_25814 DeepMRMD:0.56354796886444;iRNA_m5C:0.999536712157815 25815 chr4 53579476 53579476 1 + T G LGG 53579477 + 53579457 53579497 41 CAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGA CAGAAGGGTAAAGTAAGTCGCCATAAAACCCAGAGAAGAGA < 41bp 1 0.114352593915279 1 0.106504619121552 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579477 chr4:53579476 . . 0 20 hm5C_associated_SNPs_25146 0 0 1 2 0 unknown 1 0.500231643916059 1 0.999536712167882 hm5C_site_25815 DeepMRMD:1;iRNA_m5C:0.999536712167882 25816 chr4 53579476 53579476 1 + T G LGG 53579478 + 53579458 53579498 41 AGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGAC AGAAGGGTAAAGTAAGTCGCCATAAAACCCAGAGAAGAGAC < 41bp 1 0.279689546508079 1 0.20945742726326 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579478 chr4:53579476 . . 0 19 hm5C_associated_SNPs_25147 0 0 1 2 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_25816 DeepMRMD:1;iRNA_m5C:0.999536712157815 25817 chr4 53579476 53579476 1 + T G LGG 53579485 + 53579465 53579505 41 TAAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAG TAAAGTAAGTCGCCATAAAACCCAGAGAAGAGACTGGAAAG < 41bp 1 0.391286695865618 1 0.264855831861496 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579485 chr4:53579476 . . 0 12 hm5C_associated_SNPs_25148 0 0 1 2 0 unknown 1 0.50023164392111 1 0.99953671215778 hm5C_site_25817 DeepMRMD:1;iRNA_m5C:0.99953671215778 25818 chr4 53579476 53579476 1 + T G LGG 53579486 + 53579466 53579506 41 AAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGC AAAGTAAGTCGCCATAAAACCCAGAGAAGAGACTGGAAAGC < 41bp 1 0.571550221661269 1 0.401114225387573 experiment 0.856899556677462 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579486 chr4:53579476 . . 0 11 hm5C_associated_SNPs_25149 0 0 1 2 0 unknown 1 0.50023164459847 1 0.99953671080306 hm5C_site_25818 DeepMRMD:1;iRNA_m5C:0.99953671080306 25819 chr4 53579476 53579476 1 + T G LGG 53579487 + 53579467 53579507 41 AAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGCT AAGTAAGTCGCCATAAAACCCAGAGAAGAGACTGGAAAGCT < 41bp 1 0.426118435380475 1 0.431349039077759 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579487 chr4:53579476 . . 0 10 hm5C_associated_SNPs_25150 0 0 1 2 0 unknown 1 0.500231643921059 1 0.999536712157883 hm5C_site_25819 DeepMRMD:1;iRNA_m5C:0.999536712157883 25820 chr3 111705808 111705808 1 + A C LGG 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGCTTCATGCTGCCATTGCACGACCAGAGAAGGTCGTGGCT < 41bp 1 0.540285062612974 1 0.143828630447388 experiment 0.919429874774053 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705808 synonymous SNV . 0 14 hm5C_associated_SNPs_25151 0 0 0 0 2 Ribosome 1 0.500226824271077 1 0.999546351457845 hm5C_site_25820 DeepMRMD:1;iRNA_m5C:0.999546351457845 25821 chr6 37298922 37298922 1 + G A LGG 37298920 + 37298900 37298940 41 CAGACTCAAGTACATGTTTGCCGATGCCCCAAATCACTACC CAGACTCAAGTACATGTTTGCCAATGCCCCAAATCACTACC < 41bp 1 0.0978816912383485 1 0.0438442230224609 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37298920 chr6:37298922 nonsynonymous SNV 0.961 1 23 hm5C_associated_SNPs_25152 0 0 0 0 0 chromatin 1 0.500231643921072 1 0.999536712157855 hm5C_site_25821 DeepMRMD:1;iRNA_m5C:0.999536712157855 25822 chr11 67046685 67046685 1 + C G LGG 67046676 + 67046656 67046696 41 CACTGTTGCCTTCAGGGTACCTGCTCTTCCGAGACTTCTGC CACTGTTGCCTTCAGGGTACCTGCTCTTCGGAGACTTCTGC < 41bp 1 0.206878153396236 1 0.0697354972362518 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67046676 chr11:67046685 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_25153 0 0 1 0 1 chromatin 1 0.500231670927245 1 0.999536658145509 hm5C_site_25822 DeepMRMD:1;iRNA_m5C:0.999536658145509 25823 chr12 57911132 57911132 1 + C T LGG 57911135 + 57911115 57911155 41 CAGGTCCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTG CAGGTCCTCATACCAGGTTTCCAGCTCCCAGCTGGACAGTG < 41bp 1 0.179768348380145 1 0.0485608279705048 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911135 chr12:57911132 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_25154 0 0 0 0 1 Cytosol 1 0.500231643921091 1 0.999536712157817 hm5C_site_25823 DeepMRMD:1;iRNA_m5C:0.999536712157817 25824 chr12 57911132 57911132 1 + C T LGG 57911139 + 57911119 57911159 41 TCCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTGTCCC TCCTCATACCAGGTTTCCAGCTCCCAGCTGGACAGTGTCCC < 41bp 1 0.292459456493367 1 0.0949421226978302 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911139 chr12:57911132 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_25155 0 0 0 0 1 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_25824 DeepMRMD:1;iRNA_m5C:0.999536712157806 25825 chr10 102112184 102112184 1 + C T LGG 102112188 + 102112168 102112208 41 CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG CTCATCGTCTGTGGAGTCACCGCTCTTACAAAGCTCGGCTG < 41bp 1 0.441756228714331 1 0.537870049476624 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102112188 chr10:102112184 synonymous SNV . 0 17 hm5C_associated_SNPs_25156 0 0 1 0 2 Ribosome 1 0.500239544247597 0.924259901046752 0.999520911504806 hm5C_site_25825 DeepMRMD:0.924259901046752;iRNA_m5C:0.999520911504806 25826 chr9 132482974 132482974 1 + G A LGG 132482973 + 132482953 132482993 41 AAGTCCTACAGCCAGGAGGCCGCCATCGAGCAGCCCGTGGC AAGTCCTACAGCCAGGAGGCCACCATCGAGCAGCCCGTGGC < 41bp 1 0.611449939773158 1 0.35648450255394 experiment 0.777100120453685 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132482973 chr9:132482974 nonsynonymous SNV 0.988 3 22 hm5C_associated_SNPs_25157 0 0 0 0 2 chromatin 1 0.500231643921177 1 0.999536712157646 hm5C_site_25826 DeepMRMD:1;iRNA_m5C:0.999536712157646 25827 chr11 68204389 68204389 1 + A G LGG 68204395 + 68204375 68204415 41 AGTTCCGGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG AGTTCCGGTGTGCGGGCGGCCAGTGTGTCCTCATCAAACAG < 41bp 1 0.403053060286013 1 0.509385764598846 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204395 chr11:68204389 nonsynonymous SNV 0.981 2 15 hm5C_associated_SNPs_25158 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920999 0.981228470802308 0.999536712158003 hm5C_site_25827 DeepMRMD:0.981228470802308;iRNA_m5C:0.999536712158003 25828 chr5 169127065 169127065 1 + C T LGG 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGGTGGGTGACATCATTCAGATTTGCAAGGACTATCCA < 41bp 1 0.508868268271802 1 0.748930275440216 experiment 0.982263463456396 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127065 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_25159 0 0 1 0 2 Cytosol 1 0.500231643917595 0.502139449119568 0.999536712164809 hm5C_site_25828 DeepMRMD:0.502139449119568;iRNA_m5C:0.999536712164809 25829 chr5 37000657 37000657 1 + C T LGG 37000659 + 37000639 37000679 41 GAAGATTATTCTCCTCCTCCCAGCCTTAGTGAGGGTAATTC GAAGATTATTCTCCTCCTTCCAGCCTTAGTGAGGGTAATTC < 41bp 1 0.159794093947006 1 0.058546245098114 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:37000659 chr5:37000657 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_25160 1 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25829 DeepMRMD:1;iRNA_m5C:0.999536712157815 Cornelia de Lange Syndrome Cornelia de Lange Syndrome 25830 chr6 145149966 145149966 1 + G C LGG 145149979 + 145149959 145149999 41 TCTCACTGATAGCAGCTCCACCACAGGAAGTGTGTAAGTAA TCTCACTCATAGCAGCTCCACCACAGGAAGTGTGTAAGTAA < 41bp 1 0.109151809972124 1 0.110531508922577 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145149979 chr6:145149966 nonsynonymous SNV 0.908 3 8 hm5C_associated_SNPs_25161 0 0 1 0 2 Nucleus 1 0.500231642421264 1 0.999536715157472 hm5C_site_25830 DeepMRMD:1;iRNA_m5C:0.999536715157472 25831 chr16 1889339 1889339 1 + G A LGG 1889321 - 1889301 1889341 41 TGCTGATTGATCTGACTGATCACACAGGCACCCTTCATTCC TGTTGATTGATCTGACTGATCACACAGGCACCCTTCATTCC < 41bp 1 0.554898005606882 1 0.043267548084259 experiment 0.890203988786235 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human protein_coding chr16:1889321 chr16:1889339 synonymous SNV . 0 3 hm5C_associated_SNPs_25162 0 0 1 0 1 chromatin 1 0.500231563661311 1 0.999536872677378 hm5C_site_25831 DeepMRMD:1;iRNA_m5C:0.999536872677378 25832 chr16 1889339 1889339 1 + G A LGG 1889342 + 1889322 1889362 41 ATCAGTCAGATCAATCAGCACATGGAAACTGAGAAAGACAG ATCAGTCAGATCAATCAACACATGGAAACTGAGAAAGACAG < 41bp 1 0.620523720057697 1 0.169712781906128 experiment 0.758952559884607 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human protein_coding chr16:1889342 chr16:1889339 synonymous SNV . 0 18 hm5C_associated_SNPs_25163 0 0 0 1 1 chromatin 1 0.49925784489736 1 1 hm5C_site_25832 DeepMRMD:1;iRNA_m5C:1 25833 chr14 93043731 93043731 1 + C T LGG 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTCGCCGGGACAGCAGTTCGAAGCAGCTGGT < 41bp 1 0.547824251788448 1 0.344885408878326 experiment 0.904351496423105 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043731 synonymous SNV . 0 27 hm5C_associated_SNPs_25164 0 0 0 0 2 cytosol 1 0.500231643952059 1 0.999536712095882 hm5C_site_25833 DeepMRMD:1;iRNA_m5C:0.999536712095882 25834 chr12 112926291 112926291 1 + T G LGG 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCGTAT < 41bp 1 0.174759143713642 1 0.0197249054908752 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926291 nonsynonymous SNV 1.000 5 38 hm5C_associated_SNPs_25165 0 0 0 0 2 Ribosome 1 0.500231411517606 1 0.999537176964788 hm5C_site_25834 DeepMRMD:1;iRNA_m5C:0.999537176964788 25835 chr11 118344558 118344558 1 + A G LGG 118344564 + 118344544 118344584 41 AGAGAAAAGGAAAAAGGGATCAGAAATTCAGAGTAGTTCTG AGAGAAAAGGAAAAGGGGATCAGAAATTCAGAGTAGTTCTG < 41bp 1 0.335777477971847 1 0.611525177955627 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118344564 chr11:118344558 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_25166 0 0 1 0 0 Cytosol 1 0.500231643921092 0.776949644088746 0.999536712157815 hm5C_site_25835 DeepMRMD:0.776949644088746;iRNA_m5C:0.999536712157815 25836 chr17 73814838 73814838 1 + G A LGG 73814851 + 73814831 73814871 41 GTCCCCGGCATGAATGCAAACGCTCTGCCCTTCTACCCCAC GTCCCCGACATGAATGCAAACGCTCTGCCCTTCTACCCCAC < 41bp 1 0.332189761071166 1 0.175079256296158 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814851 chr17:73814838 nonsynonymous SNV 0.997 3 8 hm5C_associated_SNPs_25168 0 0 0 0 1 Cytosol 1 0.500231643912596 1 0.999536712174809 hm5C_site_25836 DeepMRMD:1;iRNA_m5C:0.999536712174809 25837 chrX 73047032 73047032 1 + C T LGG 73047047 - 73047027 73047067 41 TCAGAGCAAGCATTGTGGAGCGGTTCCTTATGCCAGGCTGC TCAGAGCAAGCATTGTGGAGCGGTTCCTTATGCCAAGCTGC < 41bp 1 0.0973007297168797 1 0.0700969696044922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047047 chrX:73047032 . . 0 36 hm5C_associated_SNPs_25169 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_25837 DeepMRMD:1;iRNA_m5C:0.999536712157815 25838 chr20 1905410 1905410 1 + A G LGG 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGGGAACACTGGATCTAATGAACGGAACATCTATA < 41bp 1 0.187535995982361 1 0.0595219135284424 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905410 nonsynonymous SNV 0.061 0 9 hm5C_associated_SNPs_25170 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_25838 DeepMRMD:1;iRNA_m5C:0.999536712157815 25839 chrX 205505 205505 1 + G A LGG 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCACGCACCCTGTCGTGCTGAA < 41bp 1 0.404111170650568 1 0.0755820274353027 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205505 nonsynonymous SNV 0.006 0 26 hm5C_associated_SNPs_25171 0 0 1 0 1 Cytosol 1 0.500231642616795 1 0.99953671476641 hm5C_site_25839 DeepMRMD:1;iRNA_m5C:0.99953671476641 25840 chr15 41192203 41192203 1 + G T LGG 41192201 + 41192181 41192221 41 TACCACGTGCAACGGGAGGCCCGAGATGTCTGGCGCACCTA TACCACGTGCAACGGGAGGCCCTAGATGTCTGGCGCACCTA < 41bp 1 0.108075605035929 1 0.332599967718124 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192201 chr15:41192203 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_25172 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_25840 DeepMRMD:1;iRNA_m5C:0.999536712157815 25841 chr15 41105573 41105573 1 + C T LGG 41105590 + 41105570 41105610 41 TGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC TGATGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC < 41bp 1 0.478370740556238 1 0.119620770215988 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105590 chr15:41105573 synonymous SNV . 0 4 hm5C_associated_SNPs_25174 0 0 0 0 2 Ribosome 1 0.500231644583071 1 0.999536710833858 hm5C_site_25841 DeepMRMD:1;iRNA_m5C:0.999536710833858 25842 chr2 135180442 135180442 1 + C G LGG 135180429 + 135180409 135180449 41 CGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGG CGGGCGGCCACATGTGTGGACTGTTGACCTCAAGAATCAGG < 41bp 1 0.0674613006995411 1 0.0212928950786591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135180429 chr2:135180442 nonsynonymous SNV 0.978 1 34 hm5C_associated_SNPs_25175 0 0 1 0 2 Ribosome 1 0.500231644078574 1 0.999536711842851 hm5C_site_25842 DeepMRMD:1;iRNA_m5C:0.999536711842851 25843 chr1 92495797 92495797 1 + C T LGG 92495811 + 92495791 92495831 41 GGCGGCCCGCCCGGGAGCACCCTCCCGCGTGCCTGAGCGAC GGCGGCTCGCCCGGGAGCACCCTCCCGCGTGCCTGAGCGAC < 41bp 1 0.280702826363768 1 0.350677311420441 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92495811 chr1:92495797 nonsynonymous SNV 0.270 0 7 hm5C_associated_SNPs_25176 0 0 0 0 1 exosome 1 0.50023163916592 1 0.999536721668161 hm5C_site_25843 DeepMRMD:1;iRNA_m5C:0.999536721668161 25844 chrX 153608123 153608123 1 + C T LGG 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA CCCAGTTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA < 41bp 1 0.414443541482344 1 0.154465675354004 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608123 synonymous SNV . 0 6 hm5C_associated_SNPs_25177 0 0 1 0 2 Ribosome 1 0.500264981350896 1 0.999470037298209 hm5C_site_25844 DeepMRMD:1;iRNA_m5C:0.999470037298209 25845 chrX 153608123 153608123 1 + C T LGG 153608140 + 153608120 153608160 41 CAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA CAGTTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA < 41bp 1 0.228703760920449 1 0.104846775531769 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608140 chrX:153608123 synonymous SNV . 0 4 hm5C_associated_SNPs_25178 0 0 1 0 2 Ribosome 1 0.500231643865254 1 0.999536712269491 hm5C_site_25845 DeepMRMD:1;iRNA_m5C:0.999536712269491 25846 chr15 40509802 40509802 1 + C T LGG 40509796 + 40509776 40509816 41 GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGT GTGCAGCTGGATGTTTTTACCCTCAGTGGCTTTCGGACTGT < 41bp 1 0.414596631448073 1 0.0950810015201569 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509796 chr15:40509802 synonymous SNV . 0 27 hm5C_associated_SNPs_25179 0 0 1 0 1 Nucleus 1 0.500231647753556 1 0.999536704492888 hm5C_site_25846 DeepMRMD:1;iRNA_m5C:0.999536704492888 25847 chr19 39664275 39664275 1 + G C LGG 39664261 + 39664241 39664281 41 ACGGGCCATCAGCGGGGGGCCTGGCCATCCCCCAGTCCTCC ACGGGCCATCAGCGGGGGGCCTGGCCATCCCCCACTCCTCC < 41bp 1 0.546679265231361 1 0.0569327473640442 experiment 0.906641469537279 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK4 ENSG00000130669 CDS Human protein_coding chr19:39664261 chr19:39664275 nonsynonymous SNV 0.864 2 35 hm5C_associated_SNPs_25180 0 0 0 0 1 Ribosome 1 0.500231643921063 1 0.999536712157873 hm5C_site_25847 DeepMRMD:1;iRNA_m5C:0.999536712157873 25848 chr5 71493378 71493378 1 + G A LGG 71493379 + 71493359 71493399 41 AAAGTTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATC AAAGTTTTGTCTCCTTTACACAGCCCGCCCCTCATTGGATC < 41bp 1 0.203311577756546 1 0.317157804965973 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493379 chr5:71493378 nonsynonymous SNV 0.834 3 20 hm5C_associated_SNPs_25181 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25848 DeepMRMD:1;iRNA_m5C:0.999536712157815 25849 chr5 71493378 71493378 1 + G A LGG 71493383 + 71493363 71493403 41 TTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATCCGAG TTTTGTCTCCTTTACACAGCCCGCCCCTCATTGGATCCGAG < 41bp 1 0.0381801269774943 1 0.102522403001785 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493383 chr5:71493378 nonsynonymous SNV 0.834 3 16 hm5C_associated_SNPs_25182 0 0 1 0 0 Cytosol 1 0.500231644370219 1 0.999536711259562 hm5C_site_25849 DeepMRMD:1;iRNA_m5C:0.999536711259562 25850 chr5 159344767 159344767 1 + G T LGG 159344770 + 159344750 159344790 41 GCTGTCAAACTTTTTAAGTTCTCCAGGGAAAAGAAAGCAGC GCTGTCAAACTTTTTAATTTCTCCAGGGAAAAGAAAGCAGC < 41bp 1 0.684345474277922 1 0.935559093952179 experiment 0.631309051444155 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout ADRA1B ENSG00000170214 CDS Human protein_coding chr5:159344770 chr5:159344767 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_25183 0 0 0 0 1 exosome 1 0.500231643932004 0.128881812095642 0.999536712135992 hm5C_site_25850 DeepMRMD:0.128881812095642;iRNA_m5C:0.999536712135992 25851 chr1 145368516 145368516 1 + G A LGG 145368536 + 145368516 145368556 41 GTCAATGTACTTTGAACTACCTGACTCATTCCAGCACTACA ATCAATGTACTTTGAACTACCTGACTCATTCCAGCACTACA < 41bp 1 0.0738867423731023 1 0.112791299819946 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368536 chr1:145368516 synonymous SNV . 0 1 hm5C_associated_SNPs_25184 0 0 0 0 1 exosome 1 0.500228942017212 1 0.999542115965576 hm5C_site_25851 DeepMRMD:1;iRNA_m5C:0.999542115965576 25852 chr1 235543460 235543460 1 + G C LGG 235543456 + 235543436 235543476 41 TTTTGCTGGTGTTGTCCCTCCCGTGGCAGGTAAGCAATTAT TTTTGCTGGTGTTGTCCCTCCCGTCGCAGGTAAGCAATTAT < 41bp 1 0.0584049547139048 1 0.472266525030136 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235543456 chr1:235543460 synonymous SNV . 0 25 hm5C_associated_SNPs_25185 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157813 hm5C_site_25852 DeepMRMD:1;iRNA_m5C:0.999536712157813 25853 chr2 67631743 67631743 1 + C T LGG 67631731 + 67631711 67631751 41 TCAGAAAGTATATGTGAGATCAATAATAATTCCGAACATGG TCAGAAAGTATATGTGAGATCAATAATAATTCTGAACATGG < 41bp 1 0.544695040449768 1 0.0734659433364868 experiment 0.910609919100463 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETAA1 ENSG00000143971 CDS Human protein_coding chr2:67631731 chr2:67631743 synonymous SNV . 0 33 hm5C_associated_SNPs_25186 0 0 0 0 0 nucleolus 1 0.500231643920935 1 0.99953671215813 hm5C_site_25853 DeepMRMD:1;iRNA_m5C:0.99953671215813 25854 chr8 25181376 25181376 1 + C T LGG 25181381 + 25181361 25181401 41 CAGCCAGAGATAAATCGGAGCGAGCATTTGGGGTGGCCTTC CAGCCAGAGATAAATTGGAGCGAGCATTTGGGGTGGCCTTC < 41bp 1 0.180217995711311 1 0.493649005889893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25181381 chr8:25181376 nonsynonymous SNV 0.968 3 16 hm5C_associated_SNPs_25187 0 0 1 1 3 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25854 DeepMRMD:1;iRNA_m5C:0.999536712157815 25855 chr9 138378948 138378948 1 + C T LGG 138378942 + 138378922 138378962 41 TCAGAAGTTCAGGCAGAGGGCCCCACCGCTCTTGGGACAGG TCAGAAGTTCAGGCAGAGGGCCCCACTGCTCTTGGGACAGG < 41bp 1 0.33985427654524 1 0.162379145622253 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378942 chr9:138378948 synonymous SNV . 0 27 hm5C_associated_SNPs_25188 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_25855 DeepMRMD:1;iRNA_m5C:0.999536712157814 25856 chr9 138378948 138378948 1 + C T LGG 138378943 + 138378923 138378963 41 CAGAAGTTCAGGCAGAGGGCCCCACCGCTCTTGGGACAGGG CAGAAGTTCAGGCAGAGGGCCCCACTGCTCTTGGGACAGGG < 41bp 1 0.0270449053385466 1 0.0769405364990234 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378943 chr9:138378948 synonymous SNV . 0 26 hm5C_associated_SNPs_25189 0 0 1 0 0 Ribosome 1 0.500231643919603 1 0.999536712160794 hm5C_site_25856 DeepMRMD:1;iRNA_m5C:0.999536712160794 25857 chr9 138378948 138378948 1 + C T LGG 138378944 + 138378924 138378964 41 AGAAGTTCAGGCAGAGGGCCCCACCGCTCTTGGGACAGGGG AGAAGTTCAGGCAGAGGGCCCCACTGCTCTTGGGACAGGGG < 41bp 1 0.0454228310955122 1 0.0883797407150269 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378944 chr9:138378948 synonymous SNV . 0 25 hm5C_associated_SNPs_25190 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25857 DeepMRMD:1;iRNA_m5C:0.999536712157815 25858 chr9 138378948 138378948 1 + C T LGG 138378945 + 138378925 138378965 41 GAAGTTCAGGCAGAGGGCCCCACCGCTCTTGGGACAGGGGG GAAGTTCAGGCAGAGGGCCCCACTGCTCTTGGGACAGGGGG < 41bp 1 0.163377433150508 1 0.1592658162117 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378945 chr9:138378948 synonymous SNV . 0 24 hm5C_associated_SNPs_25191 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_25858 DeepMRMD:1;iRNA_m5C:0.999536712157814 25859 chr9 138378948 138378948 1 + C T LGG 138378966 + 138378946 138378986 41 ACCGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCT ACTGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCT < 41bp 1 0.104247516457421 1 0.118306219577789 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378966 chr9:138378948 synonymous SNV . 0 3 hm5C_associated_SNPs_25192 0 0 1 0 0 Ribosome 1 0.500231643938091 1 0.999536712123817 hm5C_site_25859 DeepMRMD:1;iRNA_m5C:0.999536712123817 25860 chr9 138378948 138378948 1 + C T LGG 138378967 + 138378947 138378987 41 CCGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTG CTGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTG < 41bp 1 0.104890530007325 1 0.10626158118248 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378967 chr9:138378948 synonymous SNV . 0 2 hm5C_associated_SNPs_25193 0 0 1 0 0 Ribosome 1 0.500231643920103 1 0.999536712159795 hm5C_site_25860 DeepMRMD:1;iRNA_m5C:0.999536712159795 25861 chr9 138378948 138378948 1 + C T LGG 138378968 + 138378948 138378988 41 CGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTGT TGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTGT < 41bp 1 0.336494941029593 1 0.358764469623566 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378968 chr9:138378948 synonymous SNV . 0 1 hm5C_associated_SNPs_25194 0 0 1 0 0 Ribosome 1 0.500231643939091 1 0.999536712121818 hm5C_site_25861 DeepMRMD:1;iRNA_m5C:0.999536712121818 25862 chr2 113322007 113322007 1 + C T LGG 113321998 + 113321978 113322018 41 TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGT TACAGTGAGTGCTACCCTGTCCTGCTGGATGGTGTCATGGT < 41bp 1 0.124977824475563 1 0.138773441314697 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321998 chr2:113322007 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_25195 0 0 1 0 2 Nucleus 1 0.500231582353168 1 0.999536835293664 hm5C_site_25862 DeepMRMD:1;iRNA_m5C:0.999536835293664 25863 chr2 113322007 113322007 1 + C T LGG 113321999 + 113321979 113322019 41 ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGTT ACAGTGAGTGCTACCCTGTCCTGCTGGATGGTGTCATGGTT < 41bp 1 0.629126046800462 1 0.167360931634903 experiment 0.741747906399076 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321999 chr2:113322007 nonsynonymous SNV . 0 29 hm5C_associated_SNPs_25196 0 0 1 0 2 Nucleus 1 0.500261628118671 1 0.999476743762658 hm5C_site_25863 DeepMRMD:1;iRNA_m5C:0.999476743762658 25864 chr1 82372829 82372829 1 + G A LGG 82372824 + 82372804 82372844 41 TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGT TTGAGAGCGCTAACTATGGTCGGACAGATGACAAGATTTGT < 41bp 1 0.211724365097434 1 0.279855221509933 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82372824 chr1:82372829 synonymous SNV . 0 26 hm5C_associated_SNPs_25197 0 0 1 0 1 cytosol 1 0.500231643886853 1 0.999536712226294 hm5C_site_25864 DeepMRMD:1;iRNA_m5C:0.999536712226294 25865 chr1 228362946 228362946 1 + G A LGG 228362945 + 228362925 228362965 41 TTGGCCAGGAGCTGACGGCCCGCACCCACCACATGGGCGTC TTGGCCAGGAGCTGACGGCCCACACCCACCACATGGGCGTC < 41bp 1 0.264752746310311 1 0.0550982058048248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IBA57 ENSG00000181873 CDS Human protein_coding chr1:228362945 chr1:228362946 nonsynonymous SNV 0.931 4 22 hm5C_associated_SNPs_25198 0 0 1 0 0 Ribosome 1 0.500231626178855 1 0.999536747642289 hm5C_site_25865 DeepMRMD:1;iRNA_m5C:0.999536747642289 25866 chr10 105184818 105184818 1 + G A LGG 105184825 + 105184805 105184845 41 CCTTGGTAGAGACGGGCCACCTGGCAGCTTTCTCCCTGACC CCTTGGTAGAGACAGGCCACCTGGCAGCTTTCTCCCTGACC < 41bp 1 0.309666463168934 1 0.215901106595993 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105184825 chr10:105184818 synonymous SNV . 0 14 hm5C_associated_SNPs_25199 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25866 DeepMRMD:1;iRNA_m5C:0.999536712157815 25867 chr19 4222733 4222733 1 + G A LGG 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCACCACC < 41bp 1 0.274191153245761 1 0.326056778430939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222733 nonsynonymous SNV 0.001 0 36 hm5C_associated_SNPs_25200 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25867 DeepMRMD:1;iRNA_m5C:0.999536712157815 25868 chr17 7214424 7214424 1 + A T LGG 7214415 + 7214395 7214435 41 CAACTCATAATATGGATGTCCCCAACATCAAAAGGAATGAC CAACTCATAATATGGATGTCCCCAACATCTAAAGGAATGAC < 41bp 1 0.21170309557125 1 0.120298236608505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214415 chr17:7214424 stopgain 1.000 1 30 hm5C_associated_SNPs_25201 0 0 1 0 2 Ribosome 1 0.500231643921007 1 0.999536712157986 hm5C_site_25868 DeepMRMD:1;iRNA_m5C:0.999536712157986 25869 chr17 7214424 7214424 1 + A T LGG 7214416 + 7214396 7214436 41 AACTCATAATATGGATGTCCCCAACATCAAAAGGAATGACT AACTCATAATATGGATGTCCCCAACATCTAAAGGAATGACT < 41bp 1 0.0454228624604959 1 0.109131962060928 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214416 chr17:7214424 stopgain 1.000 1 29 hm5C_associated_SNPs_25202 0 0 1 0 2 Ribosome 1 0.500231643384316 1 0.999536713231369 hm5C_site_25869 DeepMRMD:1;iRNA_m5C:0.999536713231369 25870 chrX 73041569 73041569 1 + A G LGG 73041549 - 73041529 73041569 41 TGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACTCACAG CGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACTCACAG < 41bp 1 0.0728524152069117 1 0.0964775681495667 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041549 chrX:73041569 . . 0 1 hm5C_associated_SNPs_25203 0 0 1 1 0 unknown 1 0.500231577560983 1 0.999536844878033 hm5C_site_25870 DeepMRMD:1;iRNA_m5C:0.999536844878033 25871 chrX 73041569 73041569 1 + A G LGG 73041554 - 73041534 73041574 41 AGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACT AGGCCCGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACT < 41bp 1 0.0100185084977392 1 0.0884484052658081 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041554 chrX:73041569 . . 0 6 hm5C_associated_SNPs_25204 0 0 1 1 0 unknown 1 0.5002316474955 1 0.999536705009001 hm5C_site_25871 DeepMRMD:1;iRNA_m5C:0.999536705009001 25872 chrX 73041569 73041569 1 + A G LGG 73041561 - 73041541 73041581 41 TAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTA TAAATGTAGGCCCGGCTGGGCTTTGACCTTTTCCGTTTTTA < 41bp 1 0.029844691405919 1 0.0431505739688873 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041561 chrX:73041569 . . 0 13 hm5C_associated_SNPs_25205 0 0 1 1 0 unknown 1 0.500231643921173 1 0.999536712157654 hm5C_site_25872 DeepMRMD:1;iRNA_m5C:0.999536712157654 25873 chrX 73041569 73041569 1 + A G LGG 73041566 - 73041546 73041586 41 TTCTCTAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGT TTCTCTAAATGTAGGCCCGGCTGGGCTTTGACCTTTTCCGT < 41bp 1 0.389818682342379 1 0.220942437648773 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041566 chrX:73041569 . . 0 18 hm5C_associated_SNPs_25206 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_25873 DeepMRMD:1;iRNA_m5C:0.999536712157815 25874 chr3 170078468 170078468 1 + T C LGG 170078471 + 170078451 170078491 41 ATTCCCAAGAAAGCATGTCGCCTACTGTATTTCTGCCTCTT ATTCCCAAGAAAGCATGCCGCCTACTGTATTTCTGCCTCTT < 41bp 1 0.0844520681291737 1 0.0214277505874634 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170078471 chr3:170078468 nonsynonymous SNV 0.974 4 18 hm5C_associated_SNPs_25207 0 0 1 0 0 Nucleus 1 0.500231641142288 1 0.999536717715423 hm5C_site_25874 DeepMRMD:1;iRNA_m5C:0.999536717715423 25875 chr11 118885707 118885707 1 + C G LGG 118885708 + 118885688 118885728 41 TTAATTTTTTTTTCAGGTGCCACACCTCCCTGGATGATCCA TTAATTTTTTTTTCAGGTGGCACACCTCCCTGGATGATCCA < 41bp 1 0.0577136624859311 1 0.0465313792228699 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118885708 chr11:118885707 nonsynonymous SNV 0.992 4 20 hm5C_associated_SNPs_25208 0 0 1 1 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25875 DeepMRMD:1;iRNA_m5C:0.999536712157815 25876 chr13 103299660 103299660 1 + G C LGG 103299672 + 103299652 103299692 41 GAACAAAAGACAGATGGGTTCAGGCGATGCCTATCCACATC GAACAAAACACAGATGGGTTCAGGCGATGCCTATCCACATC < 41bp 1 0.636497640911475 1 0.698014616966248 experiment 0.72700471817705 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103299672 chr13:103299660 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_25209 0 0 1 0 1 Nucleus 1 0.500231643921092 0.603970766067504 0.999536712157815 hm5C_site_25876 DeepMRMD:0.603970766067504;iRNA_m5C:0.999536712157815 25877 chr2 160053205 160053205 1 + T C LGG 160053224 + 160053204 160053244 41 CTTGTGAGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTG CCTGTGAGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTG < 41bp 1 0.0857326199023774 1 0.0434888899326324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160053224 chr2:160053205 synonymous SNV . 0 2 hm5C_associated_SNPs_25210 0 0 1 0 2 Nucleus 1 0.500231643791645 1 0.99953671241671 hm5C_site_25877 DeepMRMD:1;iRNA_m5C:0.99953671241671 25878 chr17 78078631 78078631 1 + C T LGG 78078646 + 78078626 78078666 41 CAGTGCGACGTCCCCCCCAACAGCCGCTTCGATTGCGCCCC CAGTGTGACGTCCCCCCCAACAGCCGCTTCGATTGCGCCCC < 41bp 1 0.363615416964058 1 0.705065906047821 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78078646 chr17:78078631 synonymous SNV . 0 6 hm5C_associated_SNPs_25211 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921097 0.589868187904358 0.999536712157806 hm5C_site_25878 DeepMRMD:0.589868187904358;iRNA_m5C:0.999536712157806 25879 chr7 101891755 101891755 1 + C T LGG 101891757 + 101891737 101891777 41 GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCC GAGTCAGGGCCAGGCGGGTGCCAGCGACTCACCCTCGGCCC < 41bp 1 0.322318017957702 1 0.394334614276886 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891757 chr7:101891755 synonymous SNV . 0 19 hm5C_associated_SNPs_25212 0 0 1 0 1 Exosome 1 0.500231643921181 1 0.999536712157638 hm5C_site_25879 DeepMRMD:1;iRNA_m5C:0.999536712157638 25880 chr7 40133900 40133900 1 + C T LGG 40133901 + 40133881 40133921 41 AACCAGCATGTACCCACCACCAGTTCTTCATTAACTGACCC AACCAGCATGTACCCACCATCAGTTCTTCATTAACTGACCC < 41bp 1 0.133952791655989 1 0.664786100387573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40133901 chr7:40133900 nonsynonymous SNV 0.997 0 20 hm5C_associated_SNPs_25214 0 0 1 0 0 Nucleus 1 0.500231643921155 0.670427799224854 0.999536712157689 hm5C_site_25880 DeepMRMD:0.670427799224854;iRNA_m5C:0.999536712157689 25881 chrX 153627882 153627882 1 + T G LGG 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAGTGTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT < 41bp 1 0.307237257244806 1 0.451980650424957 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627882 nonsynonymous SNV 0.948 3 7 hm5C_associated_SNPs_25215 0 0 1 0 2 Cytosol 1 0.500285927145171 1 0.999428145709657 hm5C_site_25881 DeepMRMD:1;iRNA_m5C:0.999428145709657 25882 chr2 171822309 171822309 1 + C A LGG 171822305 + 171822285 171822325 41 CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTCCATGCCT CCGTTTTTGTCCTAGGTCTGCCACATCTTCCTTCCATGCCT < 41bp 1 0.468973234860766 1 0.120403081178665 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171822305 chr2:171822309 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_25216 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25882 DeepMRMD:1;iRNA_m5C:0.999536712157815 25883 chr5 54640973 54640973 1 + G A LGG 54640986 + 54640966 54641006 41 TCGAGATGCAGGTGATTTGGCCAAAGGAGACCAGAAAGGGC TCGAGATACAGGTGATTTGGCCAAAGGAGACCAGAAAGGGC < 41bp 1 0.489682781766038 1 0.541500568389893 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640986 chr5:54640973 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_25217 0 0 1 0 1 Nucleus 1 0.500231643921092 0.916998863220214 0.999536712157815 hm5C_site_25883 DeepMRMD:0.916998863220214;iRNA_m5C:0.999536712157815 25884 chr1 203819731 203819731 1 + C T LGG 203819733 + 203819713 203819753 41 TAAGGCAGTGGAGATGCACGCTGCTGTCATTGCCGCTGTGA TAAGGCAGTGGAGATGCATGCTGCTGTCATTGCCGCTGTGA < 41bp 1 0.699203674719282 1 0.294724971055984 experiment 0.601592650561436 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203819733 chr1:203819731 synonymous SNV . 0 19 hm5C_associated_SNPs_25218 0 0 1 0 2 Nucleus 1 0.500231649051853 1 0.999536701896294 hm5C_site_25884 DeepMRMD:1;iRNA_m5C:0.999536701896294 25885 chr20 30822373 30822373 1 + C A LGG 30822376 + 30822356 30822396 41 CTGTGTCTCCTCCTTCACTGCCTTTGTGAAGCGGGAGCGGG CTGTGTCTCCTCCTTCAATGCCTTTGTGAAGCGGGAGCGGG < 41bp 1 0.0681135910159545 1 0.0548115074634552 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POFUT1 ENSG00000101346 CDS Human protein_coding chr20:30822376 chr20:30822373 nonsynonymous SNV 0.992 3 18 hm5C_associated_SNPs_25219 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920675 1 0.99953671215865 hm5C_site_25885 DeepMRMD:1;iRNA_m5C:0.99953671215865 25886 chr8 67369316 67369316 1 + T G LGG 67369308 + 67369288 67369328 41 ATTTCGTTTCTCCCCAGCCCCATGGCCTTTCTGTGGTGCTC ATTTCGTTTCTCCCCAGCCCCATGGCCTGTCTGTGGTGCTC < 41bp 1 0.524300534188477 1 0.454606711864471 experiment 0.951398931623047 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67369308 chr8:67369316 synonymous SNV . 0 29 hm5C_associated_SNPs_25220 0 0 0 4 2 cytosol 1 0.500231989183596 1 0.999536021632808 hm5C_site_25886 DeepMRMD:1;iRNA_m5C:0.999536021632808 25887 chr9 134021675 134021675 1 + C A LGG 134021668 + 134021648 134021688 41 TAGTTCCGTGCCATTGAAGTCCTCAGTCTTGCCCTCACCAT TAGTTCCGTGCCATTGAAGTCCTCAGTATTGCCCTCACCAT < 41bp 1 0.248926367205159 1 0.101429998874664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP214 ENSG00000126883 CDS Human protein_coding chr9:134021668 chr9:134021675 synonymous SNV . 0 28 hm5C_associated_SNPs_25221 0 0 0 0 1 Cytosol 1 0.500231643921641 1 0.999536712156718 hm5C_site_25887 DeepMRMD:1;iRNA_m5C:0.999536712156718 25888 chrX 41027339 41027339 1 + G A LGG 41027349 + 41027329 41027369 41 GTTTTGGATGGTGACAAAGACAGTGTTAATTGTGCAAGACA GTTTTGGATGATGACAAAGACAGTGTTAATTGTGCAAGACA < 41bp 1 0.280769381706425 1 0.259939134120941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41027349 chrX:41027339 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_25222 0 0 1 0 1 Nucleus 1 0.500224387961984 1 0.999551224076032 hm5C_site_25888 DeepMRMD:1;iRNA_m5C:0.999551224076032 25889 chr19 10886449 10886449 1 + C T LGG 10886461 + 10886441 10886481 41 CCAGACATCGAGTACCAGATCAAGGACATGATCCTGCAGTT CCAGACATTGAGTACCAGATCAAGGACATGATCCTGCAGTT < 41bp 1 0.644581920194259 1 0.771790862083435 experiment 0.710836159611482 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886461 chr19:10886449 synonymous SNV . 0 9 hm5C_associated_SNPs_25223 0 0 1 2 0 Nucleus 1 0.500231643921118 0.45641827583313 0.999536712157764 hm5C_site_25889 DeepMRMD:0.45641827583313;iRNA_m5C:0.999536712157764 25890 chr12 57599408 57599408 1 + C A LGG 57599390 + 57599370 57599410 41 TGCTCCCAGCTCTGCAACAACACCAAGGGCGGCCACCTCTG TGCTCCCAGCTCTGCAACAACACCAAGGGCGGCCACCTATG < 41bp 1 0.354170383015463 1 0.190923482179642 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599390 chr12:57599408 synonymous SNV . 0 39 hm5C_associated_SNPs_25224 0 0 0 0 2 Exosome 1 0.500231414721517 1 0.999537170556967 hm5C_site_25890 DeepMRMD:1;iRNA_m5C:0.999537170556967 25891 chr12 57599408 57599408 1 + C A LGG 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTATGCAGCTGCGCTCGGAACTTCATGAAGACGC < 41bp 1 0.217243583662651 1 0.16979056596756 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599408 synonymous SNV . 0 10 hm5C_associated_SNPs_25225 0 0 0 0 2 Exosome 1 0.500231268384397 1 0.999537463231207 hm5C_site_25891 DeepMRMD:1;iRNA_m5C:0.999537463231207 25892 chr6 126210549 126210549 1 + C A LGG 126210539 + 126210519 126210559 41 TTTCTCTTGACCCAGAGGAACGAAAGAAAGCTGAGTCACAA TTTCTCTTGACCCAGAGGAACGAAAGAAAGATGAGTCACAA < 41bp 1 0.582943672399301 1 0.620924711227417 experiment 0.834112655201397 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCOA7 ENSG00000111912 CDS Human protein_coding chr6:126210539 chr6:126210549 nonsynonymous SNV 0.002 0 31 hm5C_associated_SNPs_25226 0 0 1 0 0 Ribosome 1 0.500231643921093 0.758150577545166 0.999536712157815 hm5C_site_25892 DeepMRMD:0.758150577545166;iRNA_m5C:0.999536712157815 25893 chr11 71939482 71939482 1 + C A LGG 71939492 + 71939472 71939512 41 TGTGTGCGCCCTGCTTCTTCCTGTAGAGGGTGAGCGAGAGC TGTGTGCGCCATGCTTCTTCCTGTAGAGGGTGAGCGAGAGC < 41bp 1 0.63460287571873 1 0.727347135543823 experiment 0.730794248562539 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71939492 chr11:71939482 nonsynonymous SNV 0.982 4 11 hm5C_associated_SNPs_25227 0 0 1 0 2 Cytosol 1 0.500231643945249 0.545305728912354 0.999536712109502 hm5C_site_25893 DeepMRMD:0.545305728912354;iRNA_m5C:0.999536712109502 25894 chr11 65403922 65403922 1 + G A LGG 65403903 + 65403883 65403923 41 CACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGC CACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGAC < 41bp 1 0.181860973135091 1 0.272885739803314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403903 chr11:65403922 nonsynonymous SNV 0.944 1 40 hm5C_associated_SNPs_25228 0 0 1 0 1 Ribosome 1 0.500231643921956 1 0.999536712156088 hm5C_site_25894 DeepMRMD:1;iRNA_m5C:0.999536712156088 25895 chr11 65403922 65403922 1 + G A LGG 65403904 + 65403884 65403924 41 ACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGCT ACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGACT < 41bp 1 0.396588955470836 1 0.500965416431427 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403904 chr11:65403922 nonsynonymous SNV 0.944 1 39 hm5C_associated_SNPs_25229 0 0 1 0 1 Ribosome 1 0.500231643921092 0.998069167137146 0.999536712157815 hm5C_site_25895 DeepMRMD:0.998069167137146;iRNA_m5C:0.999536712157815 25896 chr11 65403922 65403922 1 + G A LGG 65403939 + 65403919 65403959 41 GTGGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGG GTGACTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGG < 41bp 1 0.0438542601665024 1 0.294442117214203 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403939 chr11:65403922 nonsynonymous SNV 0.944 1 4 hm5C_associated_SNPs_25230 0 0 1 0 1 Ribosome 1 0.500231643919202 1 0.999536712161596 hm5C_site_25896 DeepMRMD:1;iRNA_m5C:0.999536712161596 25897 chr11 65403922 65403922 1 + G A LGG 65403940 + 65403920 65403960 41 TGGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGC TGACTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGC < 41bp 1 0.154855678447339 1 0.492737174034119 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403940 chr11:65403922 nonsynonymous SNV 0.944 1 3 hm5C_associated_SNPs_25231 0 0 1 0 1 Ribosome 1 0.500231643920809 1 0.999536712158382 hm5C_site_25897 DeepMRMD:1;iRNA_m5C:0.999536712158382 25898 chr11 65403922 65403922 1 + G A LGG 65403941 + 65403921 65403961 41 GGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCC GACTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCC < 41bp 1 0.0535277329264093 1 0.155215889215469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403941 chr11:65403922 nonsynonymous SNV 0.944 1 2 hm5C_associated_SNPs_25232 0 0 1 0 1 Ribosome 1 0.500231643921081 1 0.999536712157838 hm5C_site_25898 DeepMRMD:1;iRNA_m5C:0.999536712157838 25899 chr11 65403922 65403922 1 + G A LGG 65403942 + 65403922 65403962 41 GCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCCT ACTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCCT < 41bp 1 0.0747298401801442 1 0.278334468603134 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403942 chr11:65403922 nonsynonymous SNV 0.944 1 1 hm5C_associated_SNPs_25233 0 0 1 0 1 Ribosome 1 0.500231643923061 1 0.999536712153878 hm5C_site_25899 DeepMRMD:1;iRNA_m5C:0.999536712153878 25900 chr7 116533072 116533072 1 + A G LGG 116533053 + 116533033 116533073 41 ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGAC ATAATTGTTTTGCAGATGTTCGGTTACTGCTTAATAATGGC < 41bp 1 0.221532497849308 1 0.451498001813889 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116533053 chr7:116533072 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_25234 0 0 1 4 2 Ribosome 1 0.500231643048031 1 0.999536713903938 hm5C_site_25900 DeepMRMD:1;iRNA_m5C:0.999536713903938 25901 chr2 61258835 61258835 1 + G A LGG 61258852 + 61258832 61258872 41 AAAGCAGCAGGGGTGCATTTCAGTCCATTGAAAGTATTGTG AAAACAGCAGGGGTGCATTTCAGTCCATTGAAAGTATTGTG < 41bp 1 0.243109593865769 1 0.483738571405411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX13 ENSG00000162928 CDS Human protein_coding chr2:61258852 chr2:61258835 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_25235 0 0 1 0 0 Ribosome 1 0.500231643817797 1 0.999536712364406 hm5C_site_25901 DeepMRMD:1;iRNA_m5C:0.999536712364406 25902 chr5 10254913 10254913 1 + G T LGG 10254899 + 10254879 10254919 41 TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGAT TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCATGATGAT < 41bp 1 0.14546832391534 1 0.098592609167099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254899 chr5:10254913 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_25236 0 0 1 0 1 Cytosol 1 0.500230436284922 1 0.999539127430156 hm5C_site_25902 DeepMRMD:1;iRNA_m5C:0.999539127430156 25903 chr5 10254913 10254913 1 + G T LGG 10254903 + 10254883 10254923 41 CAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAA CAAGCTGATGGTGGAACTGTCCAAGTCTCATGATGATGAAA < 41bp 1 0.217615179456918 1 0.206953287124634 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254903 chr5:10254913 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_25237 0 0 1 0 1 Cytosol 1 0.500231634224061 1 0.999536731551877 hm5C_site_25903 DeepMRMD:1;iRNA_m5C:0.999536731551877 25904 chr5 10254913 10254913 1 + G T LGG 10254909 + 10254889 10254929 41 GATGGTGGAACTGTCCAAGTCTCAGGATGATGAAATTGGAG GATGGTGGAACTGTCCAAGTCTCATGATGATGAAATTGGAG < 41bp 1 0.41339122361855 1 0.209260493516922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254909 chr5:10254913 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_25238 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25904 DeepMRMD:1;iRNA_m5C:0.999536712157815 25905 chr2 27663750 27663750 1 + C T LGG 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGACATCACCTGTTGTGCCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.227460466536016 1 0.0167548656463623 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663750 synonymous SNV . 0 15 hm5C_associated_SNPs_25239 0 0 0 0 2 Cytosol 1 0.50023164391904 1 0.99953671216192 hm5C_site_25905 DeepMRMD:1;iRNA_m5C:0.99953671216192 25906 chr11 65396306 65396306 1 + C T LGG 65396293 + 65396273 65396313 41 CCTTGACTGTGGCTCAGACTCGGCCATGCTGTTCGTCCAGG CCTTGACTGTGGCTCAGACTCGGCCATGCTGTTTGTCCAGG < 41bp 1 0.586252648130076 1 0.523662924766541 experiment 0.827494703739847 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396293 chr11:65396306 synonymous SNV . 0 34 hm5C_associated_SNPs_25240 0 0 1 0 1 Ribosome 1 0.500231643921093 0.952674150466918 0.999536712157813 hm5C_site_25906 DeepMRMD:0.952674150466918;iRNA_m5C:0.999536712157813 25907 chr19 17322804 17322804 1 + G A LGG 17322803 + 17322783 17322823 41 AAGGCCGTCGTCCTTCGTAACGGTCAGAGTGAAGACCCCCC AAGGCCGTCGTCCTTCGTAACAGTCAGAGTGAAGACCCCCC < 41bp 1 0.160341070893481 1 0.0961312651634216 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17322803 chr19:17322804 synonymous SNV . 0 22 hm5C_associated_SNPs_25241 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25907 DeepMRMD:1;iRNA_m5C:0.999536712157815 25908 chr11 62655901 62655901 1 + G A LGG 62655920 + 62655900 62655940 41 CGTTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC CATTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC < 41bp 1 0.396849385079757 1 0.216875493526459 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62655920 chr11:62655901 synonymous SNV . 0 2 hm5C_associated_SNPs_25242 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25908 DeepMRMD:1;iRNA_m5C:0.999536712157815 25909 chr7 94917922 94917922 1 + G T LGG 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCAGGAATGGAGTGTGCAGCATGTTTCTCACTGGTTA < 41bp 1 0.542527640913011 1 0.0834850966930389 experiment 0.914944718173978 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917922 nonsynonymous SNV 0.999 5 26 hm5C_associated_SNPs_25243 0 0 0 0 1 Nucleus 1 0.500231643894872 1 0.999536712210257 hm5C_site_25909 DeepMRMD:1;iRNA_m5C:0.999536712210257 25910 chr9 91077536 91077536 1 + T C LGG 91077534 + 91077514 91077554 41 GTTACCCAGTGGAAAGGAACCGTTCTGGACCAGGTGCCTGT GTTACCCAGTGGAAAGGAACCGCTCTGGACCAGGTGCCTGT < 41bp 1 0.420306581938585 1 0.11263045668602 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91077534 chr9:91077536 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_25244 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_25910 DeepMRMD:1;iRNA_m5C:0.999536712157815 25911 chr9 91077536 91077536 1 + T C LGG 91077544 + 91077524 91077564 41 GGAAAGGAACCGTTCTGGACCAGGTGCCTGTAAATCCTTCT GGAAAGGAACCGCTCTGGACCAGGTGCCTGTAAATCCTTCT < 41bp 1 0.541444580989072 1 0.696740388870239 experiment 0.917110838021856 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91077544 chr9:91077536 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_25245 0 0 1 0 0 Cytosol 1 0.500231643921091 0.606519222259522 0.999536712157818 hm5C_site_25911 DeepMRMD:0.606519222259522;iRNA_m5C:0.999536712157818 25912 chr16 28994535 28994535 1 + G A LGG 28994555 + 28994535 28994575 41 GCTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTG ACTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTG < 41bp 1 0.623337642103249 1 0.885387718677521 experiment 0.753324715793501 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994555 chr16:28994535 nonsynonymous SNV 0.359 3 1 hm5C_associated_SNPs_25246 0 0 0 0 2 chromatin 1 0.500231471619776 0.229224562644958 0.999537056760448 hm5C_site_25912 DeepMRMD:0.229224562644958;iRNA_m5C:0.999537056760448 25913 chr12 71977622 71977622 1 + C A LGG 71977616 + 71977596 71977636 41 GAACATGCTCACGGGAGTCTCCAGTGCCGTGCTGGCTGGTG GAACATGCTCACGGGAGTCTCCAGTGACGTGCTGGCTGGTG < 41bp 1 0.452947408719586 1 0.601753711700439 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LGR5 ENSG00000139292 CDS Human protein_coding chr12:71977616 chr12:71977622 nonsynonymous SNV 0.006 2 27 hm5C_associated_SNPs_25247 0 0 1 0 1 Nucleus 1 0.500231367783239 0.796492576599122 0.999537264433521 hm5C_site_25913 DeepMRMD:0.796492576599122;iRNA_m5C:0.999537264433521 25914 chr10 134219521 134219521 1 + C T LGG 134219517 + 134219497 134219537 41 TCCATGGTTTTCCTTGGTGGCCGGCGCGTGTTCTTGACATC TCCATGGTTTTCCTTGGTGGCCGGTGCGTGTTCTTGACATC < 41bp 1 0.235706804942118 1 0.36384990811348 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PWWP2B ENSG00000171813 CDS Human protein_coding chr10:134219517 chr10:134219521 nonsynonymous SNV 0.148 3 25 hm5C_associated_SNPs_25248 0 0 1 0 0 chromatin 1 0.500231640868899 1 0.999536718262202 hm5C_site_25914 DeepMRMD:1;iRNA_m5C:0.999536718262202 25915 chr6 31604861 31604861 1 + C A LGG 31604866 + 31604846 31604886 41 CAGGATTATCAAAAACTGAGCAGCAACCTTGGGGGACCTGG CAGGATTATCAAAAAATGAGCAGCAACCTTGGGGGACCTGG < 41bp 1 0.541023844772964 1 0.414173781871796 experiment 0.917952310454072 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604866 chr6:31604861 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_25249 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25915 DeepMRMD:1;iRNA_m5C:0.999536712157815 25916 chr4 169630277 169630277 1 + G A LGG 169630296 + 169630276 169630316 41 TGCCCAGCTGGTTGTCACCTCAGGTATGTGAGGAGTAAAAA TACCCAGCTGGTTGTCACCTCAGGTATGTGAGGAGTAAAAA < 41bp 1 0.369676605314311 1 0.776086866855621 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169630296 chr4:169630277 nonsynonymous SNV 0.840 3 2 hm5C_associated_SNPs_25250 0 0 0 0 2 Cytosol 1 0.50023165550377 0.447826266288758 0.99953668899246 hm5C_site_25916 DeepMRMD:0.447826266288758;iRNA_m5C:0.99953668899246 25917 chr19 808591 808591 1 + G A LGG 808586 + 808566 808606 41 CACAAGCTGCACGGGAAGCCCATCCGCATCACGCTCTCGAA CACAAGCTGCACGGGAAGCCCATCCACATCACGCTCTCGAA < 41bp 1 0.194880376030817 1 0.326999992132187 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808586 chr19:808591 nonsynonymous SNV 0.010 1 26 hm5C_associated_SNPs_25251 0 0 1 0 1 Cytosol 1 0.500231643920991 1 0.999536712158018 hm5C_site_25917 DeepMRMD:1;iRNA_m5C:0.999536712158018 25918 chr6 31598957 31598957 1 + C T LGG 31598940 + 31598920 31598960 41 GAGACTCCTCCAGTACCTCCCCCACCACCCTATCTGGCCAG GAGACTCCTCCAGTACCTCCCCCACCACCCTATCTGGTCAG < 41bp 1 0.140660094197011 1 0.446269035339355 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31598940 chr6:31598957 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_25252 0 0 1 0 1 Ribosome 1 0.500231645208576 1 0.999536709582848 hm5C_site_25918 DeepMRMD:1;iRNA_m5C:0.999536709582848 25919 chr1 145440773 145440773 1 + C A LGG 145440782 + 145440762 145440802 41 ATCTGAACATCCCTGATACCCCAGAAGGTGAGCCAGACCTA ATCTGAACATCACTGATACCCCAGAAGGTGAGCCAGACCTA < 41bp 1 0.276826140113501 1 0.367423474788666 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TXNIP ENSG00000117289 CDS Human other chr1:145440782 chr1:145440773 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_25253 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25919 DeepMRMD:1;iRNA_m5C:0.999536712157815 25920 chr1 145440773 145440773 1 + C A LGG 145440783 + 145440763 145440803 41 TCTGAACATCCCTGATACCCCAGAAGGTGAGCCAGACCTAA TCTGAACATCACTGATACCCCAGAAGGTGAGCCAGACCTAA < 41bp 1 0.347757368562334 1 0.559590756893158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TXNIP ENSG00000117289 CDS Human other chr1:145440783 chr1:145440773 nonsynonymous SNV . 0 11 hm5C_associated_SNPs_25254 0 0 1 0 1 Ribosome 1 0.500231643921075 0.880818486213684 0.99953671215785 hm5C_site_25920 DeepMRMD:0.880818486213684;iRNA_m5C:0.99953671215785 25921 chr2 233681715 233681715 1 + G T LGG 233681725 + 233681705 233681745 41 AAAGGCGAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGTA AAAGGCGAGATGAAGAAGAACTTGCCCGAAGGAAACAGGTA < 41bp 1 0.118495304315412 1 0.157880991697311 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681725 chr2:233681715 nonsynonymous SNV 0.999 3 11 hm5C_associated_SNPs_25256 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_25921 DeepMRMD:1;iRNA_m5C:0.999536712157814 25922 chr2 233681715 233681715 1 + G T LGG 233681730 + 233681710 233681750 41 CGAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGTATGTAT CGAGATGAAGAAGAACTTGCCCGAAGGAAACAGGTATGTAT < 41bp 1 0.444153281091928 1 0.627355396747589 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681730 chr2:233681715 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_25257 0 0 1 0 0 Nucleus 1 0.500231642958405 0.745289206504822 0.999536714083191 hm5C_site_25922 DeepMRMD:0.745289206504822;iRNA_m5C:0.999536714083191 25923 chr11 108559743 108559743 1 + G A LGG 108559748 + 108559728 108559768 41 ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA ATTCCTTTTTGAGAAACCATCTGAAGAAGAAGAGCATTGTA < 41bp 1 0.605841745703966 1 0.783204257488251 experiment 0.788316508592069 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX10 ENSG00000178105 CDS Human protein_coding chr11:108559748 chr11:108559743 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_25258 0 0 1 0 2 Nucleus 1 0.500231643924151 0.433591485023498 0.999536712151698 hm5C_site_25923 DeepMRMD:0.433591485023498;iRNA_m5C:0.999536712151698 25924 chr1 22333432 22333432 1 + G A LGG 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCACCTCACTCC < 41bp 1 0.0986618974858443 1 0.13952311873436 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333432 nonsynonymous SNV 0.018 4 32 hm5C_associated_SNPs_25259 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921147 1 0.999536712157707 hm5C_site_25924 DeepMRMD:1;iRNA_m5C:0.999536712157707 25925 chr1 22333432 22333432 1 + G A LGG 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATGCCGTCCAGCTCACCTCACTCCC < 41bp 1 0.368452801632841 1 0.674854278564453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333432 nonsynonymous SNV 0.018 4 31 hm5C_associated_SNPs_25260 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643162614 0.650291442871094 0.999536713674773 hm5C_site_25925 DeepMRMD:0.650291442871094;iRNA_m5C:0.999536713674773 25926 chr1 22333432 22333432 1 + G A LGG 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATGCCGTCCAGCTCACCTCACTCCCTCC < 41bp 1 0.364091976625281 1 0.740451991558075 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333432 nonsynonymous SNV 0.018 4 28 hm5C_associated_SNPs_25261 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.51909601688385 0.999536712157815 hm5C_site_25926 DeepMRMD:0.51909601688385;iRNA_m5C:0.999536712157815 25927 chr1 22333432 22333432 1 + G A LGG 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATGCCGTCCAGCTCACCTCACTCCCTCCC < 41bp 1 0.544344247692231 1 0.593817472457886 experiment 0.911311504615538 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333432 nonsynonymous SNV 0.018 4 27 hm5C_associated_SNPs_25262 0 0 0 0 2 Endoplasmic reticulum 1 0.500231642026323 0.812365055084228 0.999536715947353 hm5C_site_25927 DeepMRMD:0.812365055084228;iRNA_m5C:0.999536715947353 25928 chr1 22333432 22333432 1 + G A LGG 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATGCCGTCCAGCTCACCTCACTCCCTCCCGCT < 41bp 1 0.371540357665655 1 0.131227284669876 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333432 nonsynonymous SNV 0.018 4 24 hm5C_associated_SNPs_25263 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643598944 1 0.999536712802111 hm5C_site_25928 DeepMRMD:1;iRNA_m5C:0.999536712802111 25929 chr1 22333432 22333432 1 + G A LGG 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGG < 41bp 1 0.658334340102241 1 0.244765818119049 experiment 0.683331319795518 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333432 nonsynonymous SNV 0.018 4 22 hm5C_associated_SNPs_25264 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_25929 DeepMRMD:1;iRNA_m5C:0.999536712157815 25930 chr1 22333432 22333432 1 + G A LGG 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTG < 41bp 1 0.296056855688398 1 0.140532642602921 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333432 nonsynonymous SNV 0.018 4 20 hm5C_associated_SNPs_25265 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_25930 DeepMRMD:1;iRNA_m5C:0.999536712157815 25931 chr1 22333432 22333432 1 + G A LGG 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.263826017448755 1 0.307299435138702 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333432 nonsynonymous SNV 0.018 4 19 hm5C_associated_SNPs_25266 0 0 0 0 2 Endoplasmic reticulum 1 0.500234099448452 1 0.999531801103095 hm5C_site_25931 DeepMRMD:1;iRNA_m5C:0.999531801103095 25932 chr1 22333432 22333432 1 + G A LGG 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.14425797550694 1 0.336667418479919 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333432 nonsynonymous SNV 0.018 4 17 hm5C_associated_SNPs_25267 0 0 0 0 2 Endoplasmic reticulum 1 0.500232042978518 1 0.999535914042964 hm5C_site_25932 DeepMRMD:1;iRNA_m5C:0.999535914042964 25933 chr1 22333432 22333432 1 + G A LGG 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.349160923019077 1 0.123477637767792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333432 nonsynonymous SNV 0.018 4 15 hm5C_associated_SNPs_25268 0 0 0 0 2 Endoplasmic reticulum 1 0.50023174844488 1 0.99953650311024 hm5C_site_25933 DeepMRMD:1;iRNA_m5C:0.99953650311024 25934 chr1 22333432 22333432 1 + G A LGG 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0782619459054896 1 0.0734361410140991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333432 nonsynonymous SNV 0.018 4 13 hm5C_associated_SNPs_25269 0 0 0 0 2 Endoplasmic reticulum 1 0.500231612209847 1 0.999536775580306 hm5C_site_25934 DeepMRMD:1;iRNA_m5C:0.999536775580306 25935 chr1 22333432 22333432 1 + G A LGG 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTT < 41bp 1 0.0427734684657078 1 0.0639622807502747 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333432 nonsynonymous SNV 0.018 4 12 hm5C_associated_SNPs_25270 0 0 0 0 2 Endoplasmic reticulum 1 0.500231627688804 1 0.999536744622391 hm5C_site_25935 DeepMRMD:1;iRNA_m5C:0.999536744622391 25936 chr1 22333432 22333432 1 + G A LGG 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTTC < 41bp 1 0.398832060174932 1 0.171911090612411 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333432 nonsynonymous SNV 0.018 4 11 hm5C_associated_SNPs_25271 0 0 0 0 2 Endoplasmic reticulum 1 0.500231642733951 1 0.999536714532098 hm5C_site_25936 DeepMRMD:1;iRNA_m5C:0.999536714532098 25937 chr1 22333432 22333432 1 + G A LGG 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTTCCC < 41bp 1 0.289554151966393 1 0.154171019792557 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333432 nonsynonymous SNV 0.018 4 9 hm5C_associated_SNPs_25272 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_25937 DeepMRMD:1;iRNA_m5C:0.999536712157814 25938 chr1 22333432 22333432 1 + G A LGG 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTTCCCA < 41bp 1 0.283674255662545 1 0.294141501188278 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333432 nonsynonymous SNV 0.018 4 8 hm5C_associated_SNPs_25273 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921163 1 0.999536712157673 hm5C_site_25938 DeepMRMD:1;iRNA_m5C:0.999536712157673 25939 chr1 22333432 22333432 1 + G A LGG 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTCACCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA < 41bp 1 0.673220012928388 1 0.826444447040558 experiment 0.653559974143225 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333432 nonsynonymous SNV 0.018 4 7 hm5C_associated_SNPs_25274 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643905966 0.347111105918884 0.999536712188067 hm5C_site_25939 DeepMRMD:0.347111105918884;iRNA_m5C:0.999536712188067 25940 chr10 51584762 51584762 1 + G T LGG 51584778 + 51584758 51584798 41 AAAAGGTTGGAGATCAAGAGCTTCCTGATCAAGATGAGATG AAAATGTTGGAGATCAAGAGCTTCCTGATCAAGATGAGATG < 41bp 1 0.0830636934515649 1 0.072115033864975 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCOA4 ENSG00000138293 CDS Human other chr10:51584778 chr10:51584762 nonsynonymous SNV . 0 5 hm5C_associated_SNPs_25276 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25940 DeepMRMD:1;iRNA_m5C:0.999536712157815 25941 chr3 44442806 44442806 1 + G T LGG 44442795 + 44442775 44442815 41 TTATTCTCACCAAAGCTCAGCAGGCAAGAGAGAACATGAAA TTATTCTCACCAAAGCTCAGCAGGCAAGAGATAACATGAAA < 41bp 1 0.332490946686865 1 0.167560905218124 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCAIM ENSG00000179152 CDS Human protein_coding chr3:44442795 chr3:44442806 nonsynonymous SNV 0.711 0 32 hm5C_associated_SNPs_25277 0 0 0 0 0 Cytosol 1 0.500234763170029 1 0.999530473659943 hm5C_site_25941 DeepMRMD:1;iRNA_m5C:0.999530473659943 25942 chr1 92769570 92769570 1 + G A LGG 92769553 + 92769533 92769573 41 GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCGTGG GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCATGG < 41bp 1 0.18427650143622 1 0.0696191489696503 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92769553 chr1:92769570 nonsynonymous SNV 0.795 3 38 hm5C_associated_SNPs_25279 0 0 1 0 2 Cytosol 1 0.500231800402086 1 0.999536399195827 hm5C_site_25942 DeepMRMD:1;iRNA_m5C:0.999536399195827 25943 chr5 10254886 10254886 1 + G A LGG 10254899 + 10254879 10254919 41 TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGAT TTGCCAAACTGATGGTGGAACTGTCCAAGTCTCAGGATGAT < 41bp 1 0.118936876731918 1 0.0928276777267456 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254899 chr5:10254886 synonymous SNV . 0 8 hm5C_associated_SNPs_25280 0 0 1 0 1 Cytosol 1 0.50023161705517 1 0.999536765889661 hm5C_site_25943 DeepMRMD:1;iRNA_m5C:0.999536765889661 25944 chr5 10254886 10254886 1 + G A LGG 10254903 + 10254883 10254923 41 CAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAA CAAACTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAA < 41bp 1 0.229455595295081 1 0.205506205558777 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254903 chr5:10254886 synonymous SNV . 0 4 hm5C_associated_SNPs_25281 0 0 1 0 1 Cytosol 1 0.500231643756535 1 0.99953671248693 hm5C_site_25944 DeepMRMD:1;iRNA_m5C:0.99953671248693 25945 chr12 72274292 72274292 1 + G A LGG 72274307 + 72274287 72274327 41 AGAAAGAGGTCATCGAGGATCAGAACATCTGAACAGTTACG AGAAAAAGGTCATCGAGGATCAGAACATCTGAACAGTTACG < 41bp 1 0.689906306004563 1 0.530162572860718 experiment 0.620187387990873 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72274307 chr12:72274292 nonsynonymous SNV 0.923 1 6 hm5C_associated_SNPs_25283 0 0 1 0 2 Cytosol 1 0.500231644149661 0.939674854278564 0.999536711700678 hm5C_site_25945 DeepMRMD:0.939674854278564;iRNA_m5C:0.999536711700678 25946 chr1 11898641 11898641 1 + C A LGG 11898626 + 11898606 11898646 41 CATGAACCCTTCGCCTTTCACCGTCTCGCCCAACACCCACG CATGAACCCTTCGCCTTTCACCGTCTCGCCCAACAACCACG < 41bp 1 0.10421460600866 1 0.0315956771373749 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11898626 chr1:11898641 nonsynonymous SNV 0.990 3 36 hm5C_associated_SNPs_25284 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920776 1 0.999536712158449 hm5C_site_25946 DeepMRMD:1;iRNA_m5C:0.999536712158449 25947 chr16 3021868 3021868 1 + C T LGG 3021876 + 3021856 3021896 41 GCACCTGCTGAGCGTGGGCTCCATCCTGCAGCTGCACGCCG GCACCTGCTGAGTGTGGGCTCCATCCTGCAGCTGCACGCCG < 41bp 1 0.106486553753558 1 0.148701906204224 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAQR4 ENSG00000162073 CDS Human protein_coding chr16:3021876 chr16:3021868 synonymous SNV . 0 13 hm5C_associated_SNPs_25285 0 0 1 0 0 Ribosome 1 0.500233002834864 1 0.999533994330273 hm5C_site_25947 DeepMRMD:1;iRNA_m5C:0.999533994330273 25948 chr12 989970 989970 1 + T G LGG 989989 + 989969 990009 41 ATTCTACAGTCCTATCCCCTCCCATGCCGACAGAAGTACTG AGTCTACAGTCCTATCCCCTCCCATGCCGACAGAAGTACTG < 41bp 1 0.120599746814816 1 0.142801105976105 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WNK1 ENSG00000060237 CDS Human protein_coding chr12:989989 chr12:989970 nonsynonymous SNV 0.995 1 2 hm5C_associated_SNPs_25286 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_25948 DeepMRMD:1;iRNA_m5C:0.999536712157816 25949 chr7 148876569 148876569 1 + C T LGG 148876555 + 148876535 148876575 41 AGCACCTGCTGAACCACCGGCGGCTGCACACAGGCGAGCGG AGCACCTGCTGAACCACCGGCGGCTGCACACAGGTGAGCGG < 41bp 1 0.423220739956885 1 0.695051789283752 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148876555 chr7:148876569 synonymous SNV . 0 35 hm5C_associated_SNPs_25287 0 0 1 0 0 chromatin 1 0.500231643757777 0.609896421432496 0.999536712484445 hm5C_site_25949 DeepMRMD:0.609896421432496;iRNA_m5C:0.999536712484445 25950 chr11 74329667 74329667 1 + C A LGG 74329670 + 74329650 74329690 41 AGTTTGAGCAGTCACATCTTCACATGTCAAGTGAGACACAA AGTTTGAGCAGTCACATATTCACATGTCAAGTGAGACACAA < 41bp 1 0.679913977492956 1 0.0844721794128418 experiment 0.640172045014088 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329670 chr11:74329667 nonsynonymous SNV 0.846 0 18 hm5C_associated_SNPs_25288 0 0 1 0 1 Nucleus 1 0.50023199637541 1 0.99953600724918 hm5C_site_25950 DeepMRMD:1;iRNA_m5C:0.99953600724918 25951 chr1 109804139 109804139 1 + G A LGG 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTACCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG < 41bp 1 0.245568266834904 1 0.292142450809479 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804139 nonsynonymous SNV 0.943 1 4 hm5C_associated_SNPs_25289 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_25951 DeepMRMD:1;iRNA_m5C:0.999536712157815 25952 chr7 142460314 142460314 1 + G A LGG 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATAC < 41bp 1 0.402990864826021 1 0.360280364751816 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460314 nonsynonymous SNV 0.002 3 40 hm5C_associated_SNPs_25290 0 0 0 0 1 Cytosol 1 0.50023170155415 1 0.999536596891701 hm5C_site_25952 DeepMRMD:1;iRNA_m5C:0.999536596891701 25953 chr7 142460314 142460314 1 + G A LGG 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATACTCCT < 41bp 1 0.647613841899544 1 0.247139930725098 experiment 0.704772316200912 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460314 nonsynonymous SNV 0.002 3 36 hm5C_associated_SNPs_25291 0 0 0 0 1 Cytosol 1 0.500231643949549 1 0.999536712100903 hm5C_site_25953 DeepMRMD:1;iRNA_m5C:0.999536712100903 25954 chr7 142460314 142460314 1 + G A LGG 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCCTGGATACTCCTGTG < 41bp 1 0.292282850844991 1 0.169716835021973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460314 nonsynonymous SNV 0.002 3 33 hm5C_associated_SNPs_25292 0 0 0 0 1 Cytosol 1 0.500231688301118 1 0.999536623397765 hm5C_site_25954 DeepMRMD:1;iRNA_m5C:0.999536623397765 25955 chr7 142460314 142460314 1 + G A LGG 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATACTCCTGTGCTGAG < 41bp 1 0.205103780930364 1 0.120878994464874 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460314 nonsynonymous SNV 0.002 3 28 hm5C_associated_SNPs_25293 0 0 0 0 1 Cytosol 1 0.500231651708527 1 0.999536696582946 hm5C_site_25955 DeepMRMD:1;iRNA_m5C:0.999536696582946 25956 chr7 142460314 142460314 1 + G A LGG 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATACTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.477283143246575 1 0.267411708831787 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460314 nonsynonymous SNV 0.002 3 20 hm5C_associated_SNPs_25294 0 0 0 0 1 Cytosol 1 0.5002316439211 1 0.999536712157799 hm5C_site_25956 DeepMRMD:1;iRNA_m5C:0.999536712157799 25957 chr7 142460314 142460314 1 + G A LGG 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATACTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.301855463401533 1 0.316171646118164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460314 nonsynonymous SNV 0.002 3 18 hm5C_associated_SNPs_25295 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25957 DeepMRMD:1;iRNA_m5C:0.999536712157815 25958 chr7 142460314 142460314 1 + G A LGG 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATACTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.520282617492365 1 0.220686972141266 experiment 0.95943476501527 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460314 nonsynonymous SNV 0.002 3 17 hm5C_associated_SNPs_25296 0 0 0 0 1 Cytosol 1 0.500231643925439 1 0.999536712149121 hm5C_site_25958 DeepMRMD:1;iRNA_m5C:0.999536712149121 25959 chr7 142460314 142460314 1 + G A LGG 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATACTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.432632941434555 1 0.098967432975769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460314 nonsynonymous SNV 0.002 3 12 hm5C_associated_SNPs_25297 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25959 DeepMRMD:1;iRNA_m5C:0.999536712157815 25960 chr7 142460314 142460314 1 + G A LGG 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATACTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.379065502368314 1 0.209784686565399 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460314 nonsynonymous SNV 0.002 3 7 hm5C_associated_SNPs_25298 0 0 0 0 1 Cytosol 1 0.500231643939141 1 0.999536712121718 hm5C_site_25960 DeepMRMD:1;iRNA_m5C:0.999536712121718 25961 chr7 142460314 142460314 1 + G A LGG 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATACTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.52145776206265 1 0.67963695526123 experiment 0.9570844758747 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460314 nonsynonymous SNV 0.002 3 6 hm5C_associated_SNPs_25299 0 0 0 0 1 Cytosol 1 0.500231552140849 0.64072608947754 0.999536895718301 hm5C_site_25961 DeepMRMD:0.64072608947754;iRNA_m5C:0.999536895718301 25962 chr7 142460314 142460314 1 + G A LGG 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TACTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.369193593348989 1 0.125527530908585 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460314 nonsynonymous SNV 0.002 3 2 hm5C_associated_SNPs_25300 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25962 DeepMRMD:1;iRNA_m5C:0.999536712157815 25963 chr12 57599399 57599399 1 + C T LGG 57599390 + 57599370 57599410 41 TGCTCCCAGCTCTGCAACAACACCAAGGGCGGCCACCTCTG TGCTCCCAGCTCTGCAACAACACCAAGGGTGGCCACCTCTG < 41bp 1 0.360291970776229 1 0.213758051395416 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599390 chr12:57599399 synonymous SNV . 0 30 hm5C_associated_SNPs_25301 0 0 0 0 2 Exosome 1 0.500231619302467 1 0.999536761395065 hm5C_site_25963 DeepMRMD:1;iRNA_m5C:0.999536761395065 25964 chr12 57599399 57599399 1 + C T LGG 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC TGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC < 41bp 1 0.244485634447746 1 0.328594207763672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599399 synonymous SNV . 0 1 hm5C_associated_SNPs_25302 0 0 0 0 2 Exosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_25964 DeepMRMD:1;iRNA_m5C:0.999536712157817 25965 chr18 8826086 8826086 1 + C T LGG 8826102 + 8826082 8826122 41 CGCTCACTGAGAACGTGGCCCGGATCCTCAACAAGAAGCTG CGCTTACTGAGAACGTGGCCCGGATCCTCAACAAGAAGCTG < 41bp 1 0.097293141509227 1 0.077734112739563 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8826102 chr18:8826086 synonymous SNV . 0 5 hm5C_associated_SNPs_25303 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25965 DeepMRMD:1;iRNA_m5C:0.999536712157815 25966 chr19 8528381 8528381 1 + G A LGG 8528388 + 8528368 8528408 41 GCTTCCTCCAAAGGGATGTGCGTAAGTATCGTCTAGTTACT GCTTCCTCCAAAGAGATGTGCGTAAGTATCGTCTAGTTACT < 41bp 1 0.307837204468029 1 0.0474254488945007 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8528388 chr19:8528381 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_25304 0 0 1 0 2 Nucleus 1 0.500231259148197 1 0.999537481703605 hm5C_site_25966 DeepMRMD:1;iRNA_m5C:0.999537481703605 25967 chr19 30935223 30935223 1 + G A LGG 30935230 + 30935210 30935250 41 CGTTCCCGACGTGGCCCACCCGGTGCCCTCGCCCAAGCCTG CGTTCCCGACGTGACCCACCCGGTGCCCTCGCCCAAGCCTG < 41bp 1 0.583138516416503 1 0.516340911388397 experiment 0.833722967166995 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935230 chr19:30935223 nonsynonymous SNV 0.982 0 14 hm5C_associated_SNPs_25305 0 0 0 0 0 exosome 1 0.50023164392108 0.967318177223206 0.999536712157841 hm5C_site_25967 DeepMRMD:0.967318177223206;iRNA_m5C:0.999536712157841 25968 chr19 17615413 17615413 1 + G A LGG 17615397 + 17615377 17615417 41 GAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTCGCCCT GAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTCACCCT < 41bp 1 0.286618898098927 1 0.129344880580902 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17615397 chr19:17615413 nonsynonymous SNV 0.003 0 37 hm5C_associated_SNPs_25306 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643926991 1 0.999536712146017 hm5C_site_25968 DeepMRMD:1;iRNA_m5C:0.999536712146017 25969 chr19 11145688 11145688 1 + C T LGG 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAT < 41bp 1 0.0725681899386386 1 0.0953952968120575 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145688 synonymous SNV . 0 41 hm5C_associated_SNPs_25307 1 0 1 0 1 Nucleus 1 0.500231635176817 1 0.999536729646366 hm5C_site_25969 DeepMRMD:1;iRNA_m5C:0.999536729646366 Rhabdoid tumor predisposition syndrome 2 Rhabdoid tumor predisposition syndrome 2 25970 chr19 11145688 11145688 1 + C T LGG 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGATG < 41bp 1 0.225261120119233 1 0.137235671281815 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145688 synonymous SNV . 0 40 hm5C_associated_SNPs_25308 1 0 1 0 1 Nucleus 1 0.500231643453188 1 0.999536713093624 hm5C_site_25970 DeepMRMD:1;iRNA_m5C:0.999536713093624 Rhabdoid tumor predisposition syndrome 2 Rhabdoid tumor predisposition syndrome 2 25971 chr19 11145688 11145688 1 + C T LGG 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGATGACG < 41bp 1 0.542106805168064 1 0.523233950138092 experiment 0.915786389663871 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145688 synonymous SNV . 0 37 hm5C_associated_SNPs_25309 1 0 1 0 1 Nucleus 1 0.500231643920259 0.953532099723816 0.999536712159483 hm5C_site_25971 DeepMRMD:0.953532099723816;iRNA_m5C:0.999536712159483 Rhabdoid tumor predisposition syndrome 2 Rhabdoid tumor predisposition syndrome 2 25972 chr19 11145688 11145688 1 + C T LGG 11145704 + 11145684 11145724 41 AGGACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG AGGATGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG < 41bp 1 0.469505521751242 1 0.547757148742676 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145704 chr19:11145688 synonymous SNV . 0 5 hm5C_associated_SNPs_25311 1 0 1 0 1 Nucleus 1 0.500231643921092 0.904485702514648 0.999536712157815 hm5C_site_25972 DeepMRMD:0.904485702514648;iRNA_m5C:0.999536712157815 Rhabdoid tumor predisposition syndrome 2 Rhabdoid tumor predisposition syndrome 2 25973 chr19 11145688 11145688 1 + C T LGG 11145707 + 11145687 11145727 41 ACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG ATGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG < 41bp 1 0.226009814298357 1 0.367678433656693 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145707 chr19:11145688 synonymous SNV . 0 2 hm5C_associated_SNPs_25312 1 0 1 0 1 Nucleus 1 0.500231643857666 1 0.999536712284667 hm5C_site_25973 DeepMRMD:1;iRNA_m5C:0.999536712284667 Rhabdoid tumor predisposition syndrome 2 Rhabdoid tumor predisposition syndrome 2 25974 chr5 10387155 10387155 1 + G A LGG 10387150 + 10387130 10387170 41 CTGGCTCCGTGAGCTCACTACTGACGCTGCCATTAGATATG CTGGCTCCGTGAGCTCACTACTGACACTGCCATTAGATATG < 41bp 1 0.21533349571535 1 0.157603472471237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10387150 chr5:10387155 synonymous SNV . 0 26 hm5C_associated_SNPs_25313 0 0 1 0 2 Nucleus 1 0.500231644134987 1 0.999536711730025 hm5C_site_25974 DeepMRMD:1;iRNA_m5C:0.999536711730025 25975 chr10 17277379 17277379 1 + A T LGG 17277369 + 17277349 17277389 41 TTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGAGCAGG TTGCCACCTACAGGAAGCTGCTGGAAGGCGTGGAGAGCAGG < 41bp 1 0.642247602596448 1 0.64296019077301 experiment 0.715504794807105 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277369 chr10:17277379 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_25315 0 0 1 1 1 Ribosome 1 0.500231643804551 0.71407961845398 0.999536712390898 hm5C_site_25975 DeepMRMD:0.71407961845398;iRNA_m5C:0.999536712390898 25976 chr10 17277379 17277379 1 + A T LGG 17277386 + 17277366 17277406 41 CTGCTGGAAGGCGAGGAGAGCAGGTAGGGAACTCAGACTTG CTGCTGGAAGGCGTGGAGAGCAGGTAGGGAACTCAGACTTG < 41bp 1 0.662005024789292 1 0.626855671405792 experiment 0.675989950421416 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277386 chr10:17277379 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_25316 0 0 1 1 1 Ribosome 1 0.50023164394636 0.746288657188416 0.999536712107279 hm5C_site_25976 DeepMRMD:0.746288657188416;iRNA_m5C:0.999536712107279 25977 chr4 57340537 57340537 1 + A G LGG 57340545 + 57340525 57340565 41 ACCAGGCCATGAAAATCCTACAAAAAGCTGAAGGTTGGAAG ACCAGGCCATGAGAATCCTACAAAAAGCTGAAGGTTGGAAG < 41bp 1 0.596141925015775 1 0.347072392702103 experiment 0.80771614996845 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340545 chr4:57340537 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_25317 0 0 1 0 2 Cytosol 1 0.500231643919694 1 0.999536712160613 hm5C_site_25977 DeepMRMD:1;iRNA_m5C:0.999536712160613 25978 chr4 1332393 1332393 1 + C T LGG 1332384 + 1332364 1332404 41 CCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAA CCGCCCATGATGCTGCCCAACGGCTACGTTTACGGCTACAA < 41bp 1 0.560692806342728 1 0.224991589784622 experiment 0.878614387314544 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAEA ENSG00000090316 CDS Human protein_coding chr4:1332384 chr4:1332393 synonymous SNV . 0 30 hm5C_associated_SNPs_25318 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_25978 DeepMRMD:1;iRNA_m5C:0.999536712157815 25979 chr17 7752261 7752261 1 + C T LGG 7752242 + 7752222 7752262 41 TACCTCAGGCGGGCCCTGGGCCCGGGAGCGCAGGGCGGGCG TACCTCAGGCGGGCCCTGGGCCCGGGAGCGCAGGGCGGGTG < 41bp 1 0.558804021216978 1 0.293031871318817 experiment 0.882391957566045 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7752242 chr17:7752261 synonymous SNV . 0 40 hm5C_associated_SNPs_25319 0 0 1 0 0 Cytosol 1 0.500231643921053 1 0.999536712157894 hm5C_site_25979 DeepMRMD:1;iRNA_m5C:0.999536712157894 25980 chr17 7752261 7752261 1 + C T LGG 7752243 + 7752223 7752263 41 ACCTCAGGCGGGCCCTGGGCCCGGGAGCGCAGGGCGGGCGA ACCTCAGGCGGGCCCTGGGCCCGGGAGCGCAGGGCGGGTGA < 41bp 1 0.628961526013875 1 0.646691679954529 experiment 0.74207694797225 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7752243 chr17:7752261 synonymous SNV . 0 39 hm5C_associated_SNPs_25320 0 0 1 0 0 Cytosol 1 0.500231643848428 0.706616640090942 0.999536712303144 hm5C_site_25980 DeepMRMD:0.706616640090942;iRNA_m5C:0.999536712303144 25981 chr17 7752261 7752261 1 + C T LGG 7752281 + 7752261 7752301 41 CGAAGAGCCAGTCCCGGGCCCCATGACCCCCACCCAACCGC TGAAGAGCCAGTCCCGGGCCCCATGACCCCCACCCAACCGC < 41bp 1 0.0994183595996389 1 0.106159865856171 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7752281 chr17:7752261 synonymous SNV . 0 1 hm5C_associated_SNPs_25321 0 0 1 0 0 Cytosol 1 0.500231644264741 1 0.999536711470519 hm5C_site_25981 DeepMRMD:1;iRNA_m5C:0.999536711470519 25982 chr17 29554597 29554597 1 + T C LGG 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGGGAACAAGCAACAAAGCTAATCCTTAACTACCCAAAA < 41bp 1 0.12892473629488 1 0.152569055557251 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554597 synonymous SNV . 0 35 hm5C_associated_SNPs_25322 0 0 1 0 2 Nucleus 1 0.500231643921082 1 0.999536712157835 hm5C_site_25982 DeepMRMD:1;iRNA_m5C:0.999536712157835 25983 chr17 17698006 17698006 1 + G A LGG 17698000 + 17697980 17698020 41 AGAGCCTACACGGCAGTCTGCCGCTCGACAGCTTCTCCAAG AGAGCCTACACGGCAGTCTGCCGCTCAACAGCTTCTCCAAG < 41bp 1 0.064030395670582 1 0.0154446661472321 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17698000 chr17:17698006 nonsynonymous SNV 0.800 3 27 hm5C_associated_SNPs_25323 0 0 1 0 0 chromatin 1 0.500231630739347 1 0.999536738521306 hm5C_site_25983 DeepMRMD:1;iRNA_m5C:0.999536738521306 25984 chr8 99168368 99168368 1 + G A LGG 99168348 + 99168328 99168368 41 CTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAG CTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAA < 41bp 1 0.197530567899564 1 0.419446766376495 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POP1 ENSG00000104356 CDS Human protein_coding chr8:99168348 chr8:99168368 synonymous SNV . 0 41 hm5C_associated_SNPs_25324 0 0 0 0 1 Mitochondrion 1 0.500231643921092 1 0.999536712157815 hm5C_site_25984 DeepMRMD:1;iRNA_m5C:0.999536712157815 25985 chr12 21207494 21207494 1 + G A LGG 21207493 + 21207473 21207513 41 GCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT GCTTGTACAAGGAAATCTTACATTTATTTTGTAATTCAAGT < 41bp 1 0.0762838258381043 1 0.0545046925544739 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207493 chr12:21207494 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_25325 0 0 0 0 1 nucleus 1 0.500231646517864 1 0.999536706964272 hm5C_site_25985 DeepMRMD:1;iRNA_m5C:0.999536706964272 25986 chr10 104157744 104157744 1 + C T LGG 104157753 + 104157733 104157773 41 CATAGAATCTCCGGGGGCATCAAACCTGAAGATTTCTCGAA CATAGAATCTCTGGGGGCATCAAACCTGAAGATTTCTCGAA < 41bp 1 0.205161979605119 1 0.595626294612885 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104157753 chr10:104157744 nonsynonymous SNV 0.143 4 12 hm5C_associated_SNPs_25326 0 0 1 0 2 chromatin 1 0.500231643926266 0.80874741077423 0.999536712147468 hm5C_site_25986 DeepMRMD:0.80874741077423;iRNA_m5C:0.999536712147468 25987 chr1 220928369 220928369 1 + A G LGG 220928383 + 220928363 220928403 41 TCATTTATGAGAATAACTGCCTGATCTTCAGGGCTCCAGAC TCATTTGTGAGAATAACTGCCTGATCTTCAGGGCTCCAGAC < 41bp 1 0.414486244853669 1 0.074878454208374 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC2 ENSG00000117791 CDS Human protein_coding chr1:220928383 chr1:220928369 nonsynonymous SNV 0.138 0 7 hm5C_associated_SNPs_25327 0 0 1 0 2 nucleus 1 0.500231643921085 1 0.999536712157831 hm5C_site_25987 DeepMRMD:1;iRNA_m5C:0.999536712157831 25988 chrX 48372938 48372938 1 + A C LGG 48372950 + 48372930 48372970 41 AGCCACTGAATGTGGAGCTGCCTCGGTCAATGGTGGAAGTT AGCCACTGCATGTGGAGCTGCCTCGGTCAATGGTGGAAGTT < 41bp 1 0.0905701871786225 1 0.102214723825455 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48372950 chrX:48372938 nonsynonymous SNV 0.960 1 9 hm5C_associated_SNPs_25329 0 0 0 0 2 nucleolus 1 0.500231638226164 1 0.999536723547673 hm5C_site_25988 DeepMRMD:1;iRNA_m5C:0.999536723547673 25989 chr18 13095650 13095650 1 + G T LGG 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.245721152103175 1 0.168605268001556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095650 stopgain 0.029 1 18 hm5C_associated_SNPs_25330 0 0 1 12 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25989 DeepMRMD:1;iRNA_m5C:0.999536712157815 25990 chr18 13095650 13095650 1 + G T LGG 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGACTGTCCTACCCTAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.58050774477014 1 0.233888477087021 experiment 0.83898451045972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095650 stopgain 0.029 1 16 hm5C_associated_SNPs_25331 0 0 1 12 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_25990 DeepMRMD:1;iRNA_m5C:0.999536712157815 25991 chr19 5691360 5691360 1 + G A LGG 5691353 + 5691333 5691373 41 CTGACCAAACACACCAAGTTCGTGCGGGACATGATTCGGGA CTGACCAAACACACCAAGTTCGTGCGGAACATGATTCGGGA < 41bp 1 0.35858425936275 1 0.398599535226822 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691353 chr19:5691360 nonsynonymous SNV 1.000 0 28 hm5C_associated_SNPs_25332 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25991 DeepMRMD:1;iRNA_m5C:0.999536712157815 25992 chr19 5691360 5691360 1 + G A LGG 5691357 + 5691337 5691377 41 CCAAACACACCAAGTTCGTGCGGGACATGATTCGGGAGGTG CCAAACACACCAAGTTCGTGCGGAACATGATTCGGGAGGTG < 41bp 1 0.647098879569264 1 0.169834107160568 experiment 0.705802240861472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691357 chr19:5691360 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_25333 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25992 DeepMRMD:1;iRNA_m5C:0.999536712157815 25993 chr9 135926284 135926284 1 + G T LGG 135926282 + 135926262 135926302 41 AGGATGAGGAGGTGCCCAAGCAGCCACTGGAGGCTGCAGCC AGGATGAGGAGGTGCCCAAGCATCCACTGGAGGCTGCAGCC < 41bp 1 0.321588302395044 1 0.486777514219284 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GTF3C5 ENSG00000148308;ENSG00000148308 exonic;splicing Human other chr9:135926282 chr9:135926284 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_25334 0 0 1 0 0 Ribosome 1 0.500231643920982 1 0.999536712158035 hm5C_site_25993 DeepMRMD:1;iRNA_m5C:0.999536712158035 25994 chr9 135926284 135926284 1 + G T LGG 135926303 + 135926283 135926323 41 AGCCACTGGAGGCTGCAGCCCAGACGTGGAGGAGAGTCTGC ATCCACTGGAGGCTGCAGCCCAGACGTGGAGGAGAGTCTGC < 41bp 1 0.495674866516457 1 0.282900631427765 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GTF3C5 ENSG00000148308;ENSG00000148308 exonic;splicing Human other chr9:135926303 chr9:135926284 nonsynonymous SNV 0.007 1 2 hm5C_associated_SNPs_25336 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_25994 DeepMRMD:1;iRNA_m5C:0.999536712157815 25995 chrX 41075235 41075235 1 + A T LGG 41075229 + 41075209 41075249 41 CTAAAGCGATTTGACTATGACTGGGAAAGAGAATGTGCAAT CTAAAGCGATTTGACTATGACTGGGATAGAGAATGTGCAAT < 41bp 1 0.383171982054522 1 0.0642364025115967 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41075229 chrX:41075235 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_25337 0 0 1 0 1 Nucleus 1 0.500231681029998 1 0.999536637940004 hm5C_site_25995 DeepMRMD:1;iRNA_m5C:0.999536637940004 25996 chr18 13056632 13056632 1 + C A LGG 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCATGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT < 41bp 1 0.104419004983975 1 0.24454927444458 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056632 nonsynonymous SNV 0.030 3 3 hm5C_associated_SNPs_25338 0 0 1 0 1 Nucleus 1 0.500231643920326 1 0.999536712159348 hm5C_site_25996 DeepMRMD:1;iRNA_m5C:0.999536712159348 25997 chr7 139107024 139107024 1 + A C LGG 139107012 + 139106992 139107032 41 GAGATCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAAT GAGATCGGAAAGATAAGAAGCGGTCCTATGAGCGTGCTAAT < 41bp 1 0.205460849968512 1 0.573339641094208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107012 chr7:139107024 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_25339 0 0 1 0 0 unknown 1 0.500231657314018 0.853320717811584 0.999536685371964 hm5C_site_25997 DeepMRMD:0.853320717811584;iRNA_m5C:0.999536685371964 25998 chr7 139107024 139107024 1 + A C LGG 139107016 + 139106996 139107036 41 TCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCA TCGGAAAGATAAGAAGCGGTCCTATGAGCGTGCTAATGGCA < 41bp 1 0.077618529177359 1 0.135484248399734 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107016 chr7:139107024 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_25340 0 0 1 0 0 unknown 1 0.50023325509123 1 0.999533489817539 hm5C_site_25998 DeepMRMD:1;iRNA_m5C:0.999533489817539 25999 chr7 139107024 139107024 1 + A C LGG 139107017 + 139106997 139107037 41 CGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAG CGGAAAGATAAGAAGCGGTCCTATGAGCGTGCTAATGGCAG < 41bp 1 0.189715349403335 1 0.0752732753753662 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107017 chr7:139107024 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_25341 0 0 1 0 0 unknown 1 0.500231557740952 1 0.999536884518096 hm5C_site_25999 DeepMRMD:1;iRNA_m5C:0.999536884518096 26000 chr7 139107024 139107024 1 + A C LGG 139107028 + 139107008 139107048 41 GAAGCGGTCCTATGAGAGTGCTAATGGCAGATCAGAAGACA GAAGCGGTCCTATGAGCGTGCTAATGGCAGATCAGAAGACA < 41bp 1 0.314538419634278 1 0.144409507513046 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107028 chr7:139107024 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_25342 0 0 1 0 0 unknown 1 0.5002316439212 1 0.9995367121576 hm5C_site_26000 DeepMRMD:1;iRNA_m5C:0.9995367121576 26001 chr7 139107024 139107024 1 + A C LGG 139107035 + 139107015 139107055 41 TCCTATGAGAGTGCTAATGGCAGATCAGAAGACAGGAGGAG TCCTATGAGCGTGCTAATGGCAGATCAGAAGACAGGAGGAG < 41bp 1 0.562158995135379 1 0.329131543636322 experiment 0.875682009729242 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107035 chr7:139107024 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_25343 0 0 1 0 0 unknown 1 0.500231643920945 1 0.999536712158109 hm5C_site_26001 DeepMRMD:1;iRNA_m5C:0.999536712158109 26002 chr5 173378897 173378897 1 + G A LGG 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCACAAAAAACTATATTTGTT < 41bp 1 0.258175637715614 1 0.157445728778839 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378897 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_25344 0 0 1 0 2 Ribosome 1 0.500230600074052 1 0.999538799851895 hm5C_site_26002 DeepMRMD:1;iRNA_m5C:0.999538799851895 26003 chr6 30889947 30889947 1 + C A LGG 30889943 + 30889923 30889963 41 TCACTTTTGGAAACGGGCAGCGACCTTCTGCTGTTCTGGGT TCACTTTTGGAAACGGGCAGCGACATTCTGCTGTTCTGGGT < 41bp 1 0.550087259788346 1 0.313961923122406 experiment 0.899825480423308 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30889943 chr6:30889947 nonsynonymous SNV 0.749 1 25 hm5C_associated_SNPs_25345 0 0 1 0 2 Ribosome 1 0.500231643921279 1 0.999536712157443 hm5C_site_26003 DeepMRMD:1;iRNA_m5C:0.999536712157443 26004 chr11 70275272 70275272 1 + G A LGG 70275262 + 70275242 70275282 41 GGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG GGAGAGAGCCCAGCGGATGGCCAAGGAGCGACAGGAGCAGG < 41bp 1 0.480722762823409 1 0.449950158596039 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275262 chr11:70275272 synonymous SNV . 0 31 hm5C_associated_SNPs_25346 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_26004 DeepMRMD:1;iRNA_m5C:0.999536712157814 26005 chr1 87208030 87208030 1 + C A LGG 87208023 + 87208003 87208043 41 ATCACCTCTCCTTCCAACCTCAGTGACCTTAAGGAGTGTAG ATCACCTCTCCTTCCAACCTCAGTGACATTAAGGAGTGTAG < 41bp 1 0.305514326398376 1 0.32854700088501 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87208023 chr1:87208030 nonsynonymous SNV 0.902 0 28 hm5C_associated_SNPs_25347 0 0 1 0 1 Ribosome 1 0.500231610481617 1 0.999536779036765 hm5C_site_26005 DeepMRMD:1;iRNA_m5C:0.999536779036765 26006 chr19 17615406 17615406 1 + C T LGG 17615397 + 17615377 17615417 41 GAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTCGCCCT GAGGCAGTCTACACTCGCATCTGCTCGGGTGCCTTCGCCCT < 41bp 1 0.271023396211044 1 0.137223124504089 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17615397 chr19:17615406 synonymous SNV . 0 30 hm5C_associated_SNPs_25348 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921422 1 0.999536712157155 hm5C_site_26006 DeepMRMD:1;iRNA_m5C:0.999536712157155 26007 chr16 29989110 29989110 1 + G A LGG 29989108 + 29989088 29989128 41 GCCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGA GCCACCATGCCAGCTGGGGGCCAGGCCGGGAGCCTGAAGGA < 41bp 1 0.412555662510095 1 0.477641195058823 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989108 chr16:29989110 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_25349 0 0 1 0 0 Nucleus 1 0.500231643921386 1 0.999536712157229 hm5C_site_26007 DeepMRMD:1;iRNA_m5C:0.999536712157229 26008 chr16 29989110 29989110 1 + G A LGG 29989109 + 29989089 29989129 41 CCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGAC CCACCATGCCAGCTGGGGGCCAGGCCGGGAGCCTGAAGGAC < 41bp 1 0.422436627319919 1 0.551548600196838 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989109 chr16:29989110 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_25350 0 0 1 0 0 Nucleus 1 0.500231643921092 0.896902799606324 0.999536712157815 hm5C_site_26008 DeepMRMD:0.896902799606324;iRNA_m5C:0.999536712157815 26009 chr19 13054427 13054427 1 + C T LGG 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACGAGATGTGGGGCGTAAC < 41bp 1 0.615571945174222 1 0.637831568717957 experiment 0.768856109651556 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054427 nonsynonymous SNV 0.964 2 29 hm5C_associated_SNPs_25351 0 0 1 0 2 Ribosome 1 0.500231646710699 0.724336862564086 0.999536706578601 hm5C_site_26009 DeepMRMD:0.724336862564086;iRNA_m5C:0.999536706578601 26010 chr19 10794150 10794150 1 + G A LGG 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCACCCTTG < 41bp 1 0.381565438494161 1 0.130291700363159 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794150 nonsynonymous SNV 0.179 0 35 hm5C_associated_SNPs_25353 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26010 DeepMRMD:1;iRNA_m5C:0.999536712157815 26011 chr19 10794150 10794150 1 + G A LGG 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCCCTGACACCCCTCTCACCCTTGATGCCA < 41bp 1 0.190193993464495 1 0.0353526771068573 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794150 nonsynonymous SNV 0.179 0 29 hm5C_associated_SNPs_25354 0 0 1 0 1 Cytosol 1 0.500231643921192 1 0.999536712157615 hm5C_site_26011 DeepMRMD:1;iRNA_m5C:0.999536712157615 26012 chr16 4498835 4498835 1 + G T LGG 4498845 + 4498825 4498865 41 TCCACATCAAGATACGAGTTCCAAAGTAAGTGCCCCCTAGG TCCACATCAATATACGAGTTCCAAAGTAAGTGCCCCCTAGG < 41bp 1 0.370040030303863 1 0.105063170194626 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJA3 ENSG00000103423 CDS Human protein_coding chr16:4498845 chr16:4498835 nonsynonymous SNV 0.998 4 11 hm5C_associated_SNPs_25356 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26012 DeepMRMD:1;iRNA_m5C:0.999536712157815 26013 chr14 65209908 65209908 1 + C T LGG 65209911 + 65209891 65209931 41 ACCTTCAGCTGGCCCGACGTCCGTGAGCTCTGCTCCAAGTA ACCTTCAGCTGGCCCGATGTCCGTGAGCTCTGCTCCAAGTA < 41bp 1 0.334357375319986 1 0.123286187648773 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65209911 chr14:65209908 synonymous SNV . 0 18 hm5C_associated_SNPs_25357 0 0 1 0 0 Nucleus 1 0.500231718494695 1 0.99953656301061 hm5C_site_26013 DeepMRMD:1;iRNA_m5C:0.99953656301061 26014 chr19 13051399 13051399 1 + G A LGG 13051384 + 13051364 13051404 41 AAGCCCGAGCATATCCCTGACCCTGATGCTAAGAAGCCCGA AAGCCCGAGCATATCCCTGACCCTGATGCTAAGAAACCCGA < 41bp 1 0.136474618984234 1 0.0409500002861023 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051384 chr19:13051399 synonymous SNV . 0 36 hm5C_associated_SNPs_25358 0 0 1 0 2 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_26014 DeepMRMD:1;iRNA_m5C:0.999536712157818 26015 chr19 13051399 13051399 1 + G A LGG 13051392 + 13051372 13051412 41 GCATATCCCTGACCCTGATGCTAAGAAGCCCGAGGACTGGG GCATATCCCTGACCCTGATGCTAAGAAACCCGAGGACTGGG < 41bp 1 0.440686737423767 1 0.1988725066185 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051392 chr19:13051399 synonymous SNV . 0 28 hm5C_associated_SNPs_25359 0 0 1 0 2 Ribosome 1 0.500231643921231 1 0.999536712157538 hm5C_site_26015 DeepMRMD:1;iRNA_m5C:0.999536712157538 26016 chr19 13051399 13051399 1 + G A LGG 13051402 + 13051382 13051422 41 GACCCTGATGCTAAGAAGCCCGAGGACTGGGATGAAGAGAT GACCCTGATGCTAAGAAACCCGAGGACTGGGATGAAGAGAT < 41bp 1 0.676221581708926 1 0.678125381469727 experiment 0.647556836582148 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13051402 chr19:13051399 synonymous SNV . 0 18 hm5C_associated_SNPs_25360 0 0 1 0 2 Ribosome 1 0.500231643921134 0.643749237060546 0.999536712157732 hm5C_site_26016 DeepMRMD:0.643749237060546;iRNA_m5C:0.999536712157732 26017 chr10 103827248 103827248 1 + C T LGG 103827230 + 103827210 103827250 41 GCCCCTCCAGTCCCCTGCTTCGAAGTGAAATCTTCAAACTG GCCCCTCCAGTCCCCTGCTTCGAAGTGAAATCTTCAAATTG < 41bp 1 0.494278654280465 1 0.395108163356781 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control HPS6 ENSG00000166189 CDS Human protein_coding chr10:103827230 chr10:103827248 synonymous SNV . 0 39 hm5C_associated_SNPs_25361 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_26017 DeepMRMD:1;iRNA_m5C:0.999536712157816 26018 chr4 154318427 154318427 1 + G A LGG 154318425 + 154318405 154318445 41 CACTTCGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA CACTTCGAGACCAAAGGGAACAACTAAAGGCAGAAGTAGAA < 41bp 1 0.183047273491074 1 0.167833685874939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MND1 ENSG00000121211 CDS Human protein_coding chr4:154318425 chr4:154318427 synonymous SNV . 0 23 hm5C_associated_SNPs_25362 0 0 1 0 2 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_26018 DeepMRMD:1;iRNA_m5C:0.999536712157818 26019 chr22 47290699 47290699 1 + G A LGG 47290696 + 47290676 47290716 41 CCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGT CCAGATCCACATAGACATCCCTCACATGAGCCCTGAAGCGT < 41bp 1 0.131541224600773 1 0.067976325750351 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47290696 chr22:47290699 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_25363 0 0 1 0 2 Cytosol 1 0.50023219951425 1 0.999535600971499 hm5C_site_26019 DeepMRMD:1;iRNA_m5C:0.999535600971499 26020 chr9 18721614 18721614 1 + C T LGG 18721629 + 18721609 18721649 41 GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT GCCGCTGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT < 41bp 1 0.416027759667055 1 0.419430732727051 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18721629 chr9:18721614 nonsynonymous SNV 0.998 3 6 hm5C_associated_SNPs_25364 0 0 0 0 2 Nucleus 1 0.500259457005784 1 0.999481085988433 hm5C_site_26020 DeepMRMD:1;iRNA_m5C:0.999481085988433 26021 chr8 21856613 21856613 1 + C A LGG 21856607 + 21856587 21856627 41 GACATGTCTACTCAGGCAATCGCATCCTGACACTAGGAGAG GACATGTCTACTCAGGCAATCGCATCATGACACTAGGAGAG < 41bp 1 0.20944449237411 1 0.64108407497406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21856607 chr8:21856613 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_25365 0 0 1 0 1 Cytosol 1 0.500232072936749 0.71783185005188 0.999535854126502 hm5C_site_26021 DeepMRMD:0.71783185005188;iRNA_m5C:0.999535854126502 26022 chr11 118944660 118944660 1 + C T LGG 118944659 + 118944639 118944679 41 GGGGCTGTCCAGCAATATATCCGGTCAGTCTGGAGGCACTT GGGGCTGTCCAGCAATATATCTGGTCAGTCTGGAGGCACTT < 41bp 1 0.63815161444759 1 0.21465677022934 experiment 0.72369677110482 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS11 ENSG00000160695 CDS Human protein_coding chr11:118944659 chr11:118944660 stopgain 0.983 0 22 hm5C_associated_SNPs_25366 0 0 1 0 1 cytosol 1 0.500231630750515 1 0.999536738498969 hm5C_site_26022 DeepMRMD:1;iRNA_m5C:0.999536738498969 26023 chr18 46284702 46284702 1 + C T LGG 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCGAGTGCATCGGGGAGCGG < 41bp 1 0.558435900011103 1 0.127131730318069 experiment 0.883128199977793 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284702 nonsynonymous SNV 0.017 2 27 hm5C_associated_SNPs_25367 0 0 0 0 2 Cytosol 1 0.500231641982671 1 0.999536716034658 hm5C_site_26023 DeepMRMD:1;iRNA_m5C:0.999536716034658 26024 chr7 128119311 128119311 1 + C A LGG 128119323 + 128119303 128119343 41 CGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT CGAATTCCATGAGCTGGCACCTAGCCAAAATCAAAATCATT < 41bp 1 0.121185460770829 1 0.170093446969986 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METTL2B ENSG00000165055 CDS Human protein_coding chr7:128119323 chr7:128119311 nonsynonymous SNV 0.990 4 9 hm5C_associated_SNPs_25368 0 0 1 0 1 Ribosome 1 0.500231186545955 1 0.999537626908089 hm5C_site_26024 DeepMRMD:1;iRNA_m5C:0.999537626908089 26025 chr7 97833470 97833470 1 + C A LGG 97833471 + 97833451 97833491 41 CCAGCTTTTCCCTCACACACCTGACCGACTCGGACATCGAG CCAGCTTTTCCCTCACACAACTGACCGACTCGGACATCGAG < 41bp 1 0.157581618407846 1 0.0538173913955688 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833471 chr7:97833470 nonsynonymous SNV 0.389 5 20 hm5C_associated_SNPs_25369 0 0 1 0 1 Nucleus 1 0.500231643924248 1 0.999536712151503 hm5C_site_26025 DeepMRMD:1;iRNA_m5C:0.999536712151503 26026 chr7 65751514 65751514 1 + G A LGG 65751509 + 65751489 65751529 41 TGTTTTCAGAGTGGAGAGATCTACAGACCAAGTAATCAAGC TGTTTTCAGAGTGGAGAGATCTACAAACCAAGTAATCAAGC < 41bp 1 0.548526202571373 1 0.45641353726387 experiment 0.902947594857254 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65751509 chr7:65751514 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_25370 0 0 0 5 0 nucleoplasm 1 0.50023164392109 1 0.999536712157819 hm5C_site_26026 DeepMRMD:1;iRNA_m5C:0.999536712157819 26027 chr2 220149426 220149426 1 + C T LGG 220149415 + 220149395 220149435 41 CGCGAGCAGCAGCCGTCAGTCACTTCCAGGTCTGGGGGCAC CGCGAGCAGCAGCCGTCAGTCACTTCCAGGTTTGGGGGCAC < 41bp 1 0.51767921976397 1 0.657625555992126 experiment 0.964641560472059 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220149415 chr2:220149426 nonsynonymous SNV 0.073 1 32 hm5C_associated_SNPs_25371 0 0 1 0 1 Cytosol 1 0.500231399996464 0.684748888015748 0.999537200007071 hm5C_site_26027 DeepMRMD:0.684748888015748;iRNA_m5C:0.999537200007071 26028 chr9 71851948 71851948 1 + G T LGG 71851967 + 71851947 71851987 41 AGGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCGGGAAGA ATGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCGGGAAGA < 41bp 1 0.458436293353157 1 0.192907899618149 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71851967 chr9:71851948 nonsynonymous SNV 0.896 4 2 hm5C_associated_SNPs_25372 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26028 DeepMRMD:1;iRNA_m5C:0.999536712157815 26029 chr2 220366664 220366664 1 + G A LGG 220366650 + 220366630 220366670 41 CCAGATCCTGGCTGGGAGCCCCGAGGCATTCTTCGTGCTCA CCAGATCCTGGCTGGGAGCCCCGAGGCATTCTTCATGCTCA < 41bp 1 0.463698978704555 1 0.366317808628082 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366650 chr2:220366664 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_25374 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26029 DeepMRMD:1;iRNA_m5C:0.999536712157815 26030 chr1 205238741 205238741 1 + C A LGG 205238737 + 205238717 205238757 41 GGCAGTGCCACACTCGTCTCCAGCCCCAAGTATGGCAGCGA GGCAGTGCCACACTCGTCTCCAGCACCAAGTATGGCAGCGA < 41bp 1 0.63529624545774 1 0.682433366775513 experiment 0.72940750908452 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205238737 chr1:205238741 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_25375 0 0 0 0 0 chromatin 1 0.500231643916439 0.635133266448974 0.999536712167121 hm5C_site_26030 DeepMRMD:0.635133266448974;iRNA_m5C:0.999536712167121 26031 chrX 70519876 70519876 1 + C T LGG 70519864 + 70519844 70519884 41 GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGCAGCT GGGCAATTGGTGGAACTCCTCCTGCATTCAACTGTGCAGCT < 41bp 1 0.245503947400791 1 0.378761261701584 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70519864 chrX:70519876 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_25376 0 0 1 0 1 Nucleus 1 0.500231643921165 1 0.999536712157671 hm5C_site_26031 DeepMRMD:1;iRNA_m5C:0.999536712157671 26032 chr1 145368545 145368545 1 + T C LGG 145368536 + 145368516 145368556 41 GTCAATGTACTTTGAACTACCTGACTCATTCCAGCACTACA GTCAATGTACTTTGAACTACCTGACTCATCCCAGCACTACA < 41bp 1 0.0891483639163461 1 0.138105541467667 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368536 chr1:145368545 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_25377 0 0 0 0 0 exosome 1 0.500231273269655 1 0.999537453460691 hm5C_site_26032 DeepMRMD:1;iRNA_m5C:0.999537453460691 26033 chr1 145368545 145368545 1 + T C LGG 145368540 + 145368520 145368560 41 ATGTACTTTGAACTACCTGACTCATTCCAGCACTACAGAAG ATGTACTTTGAACTACCTGACTCATCCCAGCACTACAGAAG < 41bp 1 0.0660007483223103 1 0.148988783359528 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368540 chr1:145368545 nonsynonymous SNV . 0 26 hm5C_associated_SNPs_25378 0 0 0 0 0 exosome 1 0.500231643924283 1 0.999536712151434 hm5C_site_26033 DeepMRMD:1;iRNA_m5C:0.999536712151434 26034 chr9 110086280 110086280 1 + G T LGG 110086266 + 110086246 110086286 41 TGCTTCCAGCGTTACTACAGCAGATAGGTCGAGAGAATCCT TGCTTCCAGCGTTACTACAGCAGATAGGTCGAGATAATCCT < 41bp 1 0.251459949839561 1 0.140137135982513 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110086266 chr9:110086280 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_25379 0 0 1 0 1 Ribosome 1 0.50023156554464 1 0.999536868910721 hm5C_site_26034 DeepMRMD:1;iRNA_m5C:0.999536868910721 26035 chr1 200730022 200730022 1 + A G LGG 200730036 + 200730016 200730056 41 CCAGGAACACATCAAACCACCTGTTGTTAATTTGCTTCTAT CCAGGAGCACATCAAACCACCTGTTGTTAATTTGCTTCTAT < 41bp 1 0.175850005262905 1 0.0600105226039886 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200730036 chr1:200730022 synonymous SNV . 0 7 hm5C_associated_SNPs_25380 0 0 1 0 1 chromatin 1 0.500231643920191 1 0.999536712159618 hm5C_site_26035 DeepMRMD:1;iRNA_m5C:0.999536712159618 26036 chr20 62374307 62374307 1 + C T LGG 62374321 + 62374301 62374341 41 AGCCTGCCGCTGGAAGAAAGCCTGCCAGCGGTTCCTGGACT AGCCTGTCGCTGGAAGAAAGCCTGCCAGCGGTTCCTGGACT < 41bp 1 0.141565841198711 1 0.10368749499321 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62374321 chr20:62374307 synonymous SNV . 0 7 hm5C_associated_SNPs_25381 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26036 DeepMRMD:1;iRNA_m5C:0.999536712157815 26037 chr9 131846995 131846995 1 + T C LGG 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATCTGTCATCGTCGGTTTCGTGACCCT < 41bp 1 0.450990083183784 1 0.359122693538666 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131846995 nonsynonymous SNV 0.896 1 17 hm5C_associated_SNPs_25382 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26037 DeepMRMD:1;iRNA_m5C:0.999536712157815 26038 chr9 109689801 109689801 1 + G T LGG 109689820 + 109689800 109689840 41 CGGACGGTCAAAGGGGTACTCATTCATTATCAGAAGAAGCA CTGACGGTCAAAGGGGTACTCATTCATTATCAGAAGAAGCA < 41bp 1 0.0277923797644762 1 0.116249918937683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109689820 chr9:109689801 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_25383 0 0 1 0 0 exosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_26038 DeepMRMD:1;iRNA_m5C:0.999536712157813 26039 chr2 233681620 233681620 1 + C T LGG 233681615 + 233681595 233681635 41 AAGAGAGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGC AAGAGAGGCAGAAATGAGGGCAAAATGGGAAGAGGAAGAGC < 41bp 1 0.334593429080348 1 0.418675720691681 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681615 chr2:233681620 nonsynonymous SNV 0.991 4 26 hm5C_associated_SNPs_25384 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26039 DeepMRMD:1;iRNA_m5C:0.999536712157815 26040 chrX 152914912 152914912 1 + G A LGG 152914918 + 152914898 152914938 41 ACCAGTGGGGCTGCGGGCATCCTTCCCTGTCCAGATCCTGC ACCAGTGGGGCTGCAGGCATCCTTCCCTGTCCAGATCCTGC < 41bp 1 0.0136303935762524 1 0.0528590381145477 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152914918 chrX:152914912 nonsynonymous SNV 0.879 0 15 hm5C_associated_SNPs_25385 0 0 0 0 0 cytosol 1 0.500231644173392 1 0.999536711653216 hm5C_site_26040 DeepMRMD:1;iRNA_m5C:0.999536711653216 26041 chrX 152914912 152914912 1 + G A LGG 152914922 + 152914902 152914942 41 GTGGGGCTGCGGGCATCCTTCCCTGTCCAGATCCTGCCCAA GTGGGGCTGCAGGCATCCTTCCCTGTCCAGATCCTGCCCAA < 41bp 1 0.467385931004378 1 0.0850133895874023 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152914922 chrX:152914912 nonsynonymous SNV 0.879 0 11 hm5C_associated_SNPs_25386 0 0 0 0 0 cytosol 1 0.500231643930083 1 0.999536712139834 hm5C_site_26041 DeepMRMD:1;iRNA_m5C:0.999536712139834 26042 chr2 217012882 217012882 1 + C A LGG 217012900 + 217012880 217012920 41 TCCTCCCGCTGAGGTGACAACAAAAAGTCAGATTCCTCTCT TCATCCCGCTGAGGTGACAACAAAAAGTCAGATTCCTCTCT < 41bp 1 0.602123688880971 1 0.365348935127258 experiment 0.795752622238058 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRCC5 ENSG00000079246 CDS Human protein_coding chr2:217012900 chr2:217012882 nonsynonymous SNV 0.972 3 3 hm5C_associated_SNPs_25387 0 0 1 0 0 Nucleus 1 0.500231645192772 1 0.999536709614457 hm5C_site_26042 DeepMRMD:1;iRNA_m5C:0.999536709614457 26043 chr13 113729378 113729378 1 + G A LGG 113729386 + 113729366 113729406 41 AACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA AACAAGCACTACACGGTAGACTCCATCCGCCCAAAGTGCCA < 41bp 1 0.609431665983223 1 0.812180399894714 experiment 0.781136668033553 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113729386 chr13:113729378 nonsynonymous SNV 0.570 4 13 hm5C_associated_SNPs_25388 0 0 1 0 1 Cytosol 1 0.500231646455055 0.375639200210572 0.99953670708989 hm5C_site_26043 DeepMRMD:0.375639200210572;iRNA_m5C:0.99953670708989 26044 chrX 41025363 41025363 1 + C T LGG 41025376 + 41025356 41025396 41 TTTTGAGCGATTCTTCAAAGCTGTGAATTGTCGAGAAGGAA TTTTGAGTGATTCTTCAAAGCTGTGAATTGTCGAGAAGGAA < 41bp 1 0.160510492247055 1 0.0597126185894012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41025376 chrX:41025363 stopgain 0.999 1 8 hm5C_associated_SNPs_25389 0 0 1 0 0 Nucleus 1 0.50023164392637 1 0.99953671214726 hm5C_site_26044 DeepMRMD:1;iRNA_m5C:0.99953671214726 26045 chr1 161130759 161130759 1 + G A LGG 161130757 + 161130737 161130777 41 CCATCTCGGACCAACTTAGCCCGTTCCAAGTCTGTGAGCAG CCATCTCGGACCAACTTAGCCCATTCCAAGTCTGTGAGCAG < 41bp 1 0.0533248510029909 1 0.0788349509239197 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161130757 chr1:161130759 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_25390 0 0 1 0 0 Cytosol 1 0.500231643921842 1 0.999536712156316 hm5C_site_26045 DeepMRMD:1;iRNA_m5C:0.999536712156316 26046 chr1 161130759 161130759 1 + G A LGG 161130758 + 161130738 161130778 41 CATCTCGGACCAACTTAGCCCGTTCCAAGTCTGTGAGCAGT CATCTCGGACCAACTTAGCCCATTCCAAGTCTGTGAGCAGT < 41bp 1 0.0225630217615853 1 0.0785545706748962 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161130758 chr1:161130759 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_25391 0 0 1 0 0 Cytosol 1 0.500235276501759 1 0.999529446996481 hm5C_site_26046 DeepMRMD:1;iRNA_m5C:0.999529446996481 26047 chr1 161130759 161130759 1 + G A LGG 161130762 + 161130742 161130782 41 TCGGACCAACTTAGCCCGTTCCAAGTCTGTGAGCAGTGGGG TCGGACCAACTTAGCCCATTCCAAGTCTGTGAGCAGTGGGG < 41bp 1 0.165727278530488 1 0.250665366649628 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161130762 chr1:161130759 nonsynonymous SNV 0.998 2 18 hm5C_associated_SNPs_25392 0 0 1 0 0 Cytosol 1 0.500231643497684 1 0.999536713004632 hm5C_site_26047 DeepMRMD:1;iRNA_m5C:0.999536713004632 26048 chr11 65402798 65402798 1 + G A LGG 65402797 + 65402777 65402817 41 ATGAGGGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAAC ATGAGGGTGACCCAGCATGGCACAGCGCCATCCTCAGCAAC < 41bp 1 0.242199288573668 1 0.135209679603577 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402797 chr11:65402798 nonsynonymous SNV 0.961 4 22 hm5C_associated_SNPs_25394 0 0 1 0 0 Ribosome 1 0.500231643854464 1 0.999536712291072 hm5C_site_26048 DeepMRMD:1;iRNA_m5C:0.999536712291072 26049 chr11 65402798 65402798 1 + G A LGG 65402799 + 65402779 65402819 41 GAGGGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACAC GAGGGTGACCCAGCATGGCACAGCGCCATCCTCAGCAACAC < 41bp 1 0.351972234752164 1 0.235641807317734 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402799 chr11:65402798 nonsynonymous SNV 0.961 4 20 hm5C_associated_SNPs_25395 0 0 1 0 0 Ribosome 1 0.500231643789847 1 0.999536712420307 hm5C_site_26049 DeepMRMD:1;iRNA_m5C:0.999536712420307 26050 chr11 65402798 65402798 1 + G A LGG 65402802 + 65402782 65402822 41 GGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCC GGTGACCCAGCATGGCACAGCGCCATCCTCAGCAACACGCC < 41bp 1 0.428844406825949 1 0.435181677341461 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402802 chr11:65402798 nonsynonymous SNV 0.961 4 17 hm5C_associated_SNPs_25396 0 0 1 0 0 Ribosome 1 0.500231766045793 1 0.999536467908414 hm5C_site_26050 DeepMRMD:1;iRNA_m5C:0.999536467908414 26051 chr11 65402798 65402798 1 + G A LGG 65402804 + 65402784 65402824 41 TGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCCCT TGACCCAGCATGGCACAGCGCCATCCTCAGCAACACGCCCT < 41bp 1 0.0159656719850892 1 0.0316329598426819 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402804 chr11:65402798 nonsynonymous SNV 0.961 4 15 hm5C_associated_SNPs_25397 0 0 1 0 0 Ribosome 1 0.500231839335091 1 0.999536321329818 hm5C_site_26051 DeepMRMD:1;iRNA_m5C:0.999536321329818 26052 chr11 65402798 65402798 1 + G A LGG 65402805 + 65402785 65402825 41 GACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCCCTC GACCCAGCATGGCACAGCGCCATCCTCAGCAACACGCCCTC < 41bp 1 0.0422749890008556 1 0.0448653995990753 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402805 chr11:65402798 nonsynonymous SNV 0.961 4 14 hm5C_associated_SNPs_25398 0 0 1 0 0 Ribosome 1 0.500231643926919 1 0.999536712146162 hm5C_site_26052 DeepMRMD:1;iRNA_m5C:0.999536712146162 26053 chr14 97002275 97002275 1 + G A LGG 97002283 + 97002263 97002303 41 ATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAA ATACCCACAACAAAACTCCACGTACAATGTGTCCGTTTCAA < 41bp 1 0.0737535199457158 1 0.0700874924659729 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97002283 chr14:97002275 synonymous SNV . 0 13 hm5C_associated_SNPs_25399 0 0 1 0 2 Ribosome 1 0.500245372218665 1 0.999509255562669 hm5C_site_26053 DeepMRMD:1;iRNA_m5C:0.999509255562669 26054 chr19 39948334 39948334 1 + G T LGG 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAGTATGATGACGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.221216916258514 1 0.183018505573273 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948334 nonsynonymous SNV 0.998 1 12 hm5C_associated_SNPs_25401 0 0 1 0 2 Nucleus 1 0.500231643920432 1 0.999536712159137 hm5C_site_26054 DeepMRMD:1;iRNA_m5C:0.999536712159137 26055 chr19 39948334 39948334 1 + G T LGG 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAGTATGATGACGAGGACCAGTGGGAGGATGGAGCAGAG < 41bp 1 0.495091471639613 1 0.234329462051392 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948334 nonsynonymous SNV 0.998 1 11 hm5C_associated_SNPs_25402 0 0 1 0 2 Nucleus 1 0.500231643915048 1 0.999536712169903 hm5C_site_26055 DeepMRMD:1;iRNA_m5C:0.999536712169903 26056 chr11 129996708 129996708 1 + C T LGG 129996710 + 129996690 129996730 41 CAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAA CAGCTGGAGATTCGGCACTGCAACCGAATGGACAGGGTAAA < 41bp 1 0.155275412611587 1 0.0458104610443115 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:129996710 chr11:129996708 nonsynonymous SNV 0.996 4 19 hm5C_associated_SNPs_25404 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643922182 1 0.999536712155636 hm5C_site_26056 DeepMRMD:1;iRNA_m5C:0.999536712155636 26057 chr12 62688032 62688032 1 + G T LGG 62688042 + 62688022 62688062 41 ACAAATACCAGATGGGAGATCAAAATGTGTATCCTGGACCC ACAAATACCATATGGGAGATCAAAATGTGTATCCTGGACCC < 41bp 1 0.671414168493595 1 0.675409495830536 experiment 0.657171663012811 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62688042 chr12:62688032 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_25405 0 0 1 0 2 Ribosome 1 0.500231643921084 0.649181008338928 0.999536712157833 hm5C_site_26057 DeepMRMD:0.649181008338928;iRNA_m5C:0.999536712157833 26058 chr17 48757159 48757159 1 + G T LGG 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGTTGACATTTGCTCTGAACTGGATGATACGAATGATGTC < 41bp 1 0.576599569789777 1 0.35757777094841 experiment 0.846800860420447 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757159 nonsynonymous SNV 0.691 3 4 hm5C_associated_SNPs_25406 0 0 0 0 1 Endoplasmic reticulum 1 0.500246757207848 1 0.999506485584304 hm5C_site_26058 DeepMRMD:1;iRNA_m5C:0.999506485584304 26059 chr10 71016832 71016832 1 + A T LGG 71016829 + 71016809 71016849 41 GACCAAAGGTTTCAAGGCCACTGACTGTGAAGGGGAGGACG GACCAAAGGTTTCAAGGCCACTGTCTGTGAAGGGGAGGACG < 41bp 1 0.179324168616533 1 0.0700871348381042 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71016829 chr10:71016832 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_25407 0 0 0 0 2 Cytosol 1 0.500231644171868 1 0.999536711656263 hm5C_site_26059 DeepMRMD:1;iRNA_m5C:0.999536711656263 26060 chr22 35726441 35726441 1 + C T LGG 35726424 + 35726404 35726444 41 ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGACAAT ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGATAAT < 41bp 1 0.122158473143563 1 0.0412736833095551 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726424 chr22:35726441 synonymous SNV . 0 38 hm5C_associated_SNPs_25408 0 0 1 2 1 Cytosol 1 0.500231643921357 1 0.999536712157287 hm5C_site_26060 DeepMRMD:1;iRNA_m5C:0.999536712157287 26061 chr19 50302934 50302934 1 + G A LGG 50302928 + 50302908 50302948 41 GGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCGG GGCAGCGGGCGGCTGACCTCCTCTACACCATGTGTGACCGG < 41bp 1 0.643921989597348 1 0.848938941955566 experiment 0.712156020805303 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302928 chr19:50302934 nonsynonymous SNV 0.992 4 27 hm5C_associated_SNPs_25410 0 0 1 0 2 Ribosome 1 0.500231643921087 0.302122116088868 0.999536712157827 hm5C_site_26061 DeepMRMD:0.302122116088868;iRNA_m5C:0.999536712157827 26062 chr1 20234222 20234222 1 + G A LGG 20234221 + 20234201 20234241 41 GTCACCTTGGTGAAGACCTTCGCCGCTCTCAACATCTGACT GTCACCTTGGTGAAGACCTTCACCGCTCTCAACATCTGACT < 41bp 1 0.547337865735976 1 0.0341300666332245 experiment 0.905324268528049 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20234221 chr1:20234222 nonsynonymous SNV 0.992 2 22 hm5C_associated_SNPs_25411 0 0 1 0 0 Cytosol 1 0.50023164346119 1 0.99953671307762 hm5C_site_26062 DeepMRMD:1;iRNA_m5C:0.99953671307762 26063 chr2 100013244 100013244 1 + C T LGG 100013261 + 100013241 100013281 41 CTGCAAGATAAAAATCCTCCCTCAGTACATTTTTAATTCTC CTGTAAGATAAAAATCCTCCCTCAGTACATTTTTAATTCTC < 41bp 1 0.52557651186367 1 0.0615257024765015 experiment 0.948846976272659 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100013261 chr2:100013244 synonymous SNV . 0 4 hm5C_associated_SNPs_25412 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_26063 DeepMRMD:1;iRNA_m5C:0.999536712157815 26064 chr1 117626696 117626696 1 + C T LGG 117626677 + 117626657 117626697 41 TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCTA < 41bp 1 0.157583185412276 1 0.133395105600357 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117626677 chr1:117626696 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_25413 0 0 1 0 1 Nucleus 1 0.500231643913295 1 0.999536712173409 hm5C_site_26064 DeepMRMD:1;iRNA_m5C:0.999536712173409 26065 chr16 31088179 31088179 1 + A G LGG 31088177 + 31088157 31088197 41 GAGAAGGCTTGGCAAGCCACCCAGGTCCTGAGGATGGTGCA GAGAAGGCTTGGCAAGCCACCCGGGTCCTGAGGATGGTGCA < 41bp 1 0.416761990175894 1 0.622970938682556 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31088177 chr16:31088179 synonymous SNV . 0 23 hm5C_associated_SNPs_25415 0 0 1 0 0 Endoplasmic reticulum 1 0.500231708057954 0.754058122634888 0.999536583884092 hm5C_site_26065 DeepMRMD:0.754058122634888;iRNA_m5C:0.999536583884092 26066 chr19 41120228 41120228 1 + C T LGG 41120209 + 41120189 41120229 41 CCCACATCCGACCACCCGACCTCTCTCCTCAGACGTGGACG CCCACATCCGACCACCCGACCTCTCTCCTCAGACGTGGATG < 41bp 1 0.0278406573123015 1 0.0183580815792084 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41120209 chr19:41120228 synonymous SNV . 0 40 hm5C_associated_SNPs_25417 0 0 1 0 1 Cytosol 1 0.500231641894935 1 0.99953671621013 hm5C_site_26066 DeepMRMD:1;iRNA_m5C:0.99953671621013 26067 chr1 6681484 6681484 1 + G A LGG 6681488 + 6681468 6681508 41 CAGATGACGATTCCTGGGACCTCGTGACCTGCTTCTGCATG CAGATGACGATTCCTGAGACCTCGTGACCTGCTTCTGCATG < 41bp 1 0.448054958831787 1 0.0201326906681061 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681488 chr1:6681484 stopgain 1.000 1 17 hm5C_associated_SNPs_25418 0 0 1 0 1 cytosol 1 0.500231644120342 1 0.999536711759316 hm5C_site_26067 DeepMRMD:1;iRNA_m5C:0.999536711759316 26068 chr16 81077072 81077072 1 + C A LGG 81077079 + 81077059 81077099 41 CTACAGCCGACTCCTCAGCCCAGCCTGTGGTGTTAGGTGTT CTACAGCCGACTCATCAGCCCAGCCTGTGGTGTTAGGTGTT < 41bp 1 0.313243076852791 1 0.117138564586639 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81077079 chr16:81077072 synonymous SNV . 0 14 hm5C_associated_SNPs_25419 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26068 DeepMRMD:1;iRNA_m5C:0.999536712157815 26069 chr8 145726987 145726987 1 + C T LGG 145727002 + 145726982 145727022 41 TAGACCGGAGTGTCTCCTACCAGCTGAGCCCCCTGGACAGC TAGACTGGAGTGTCTCCTACCAGCTGAGCCCCCTGGACAGC < 41bp 1 0.583609504670433 1 0.549173891544342 experiment 0.832780990659133 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145727002 chr8:145726987 nonsynonymous SNV 0.619 2 6 hm5C_associated_SNPs_25420 0 0 1 0 1 Ribosome 1 0.500231643922387 0.901652216911316 0.999536712155227 hm5C_site_26069 DeepMRMD:0.901652216911316;iRNA_m5C:0.999536712155227 26070 chr6 42975016 42975016 1 + C T LGG 42975034 + 42975014 42975054 41 CACCCTGGAAGCTGCTTGGCCACATCTCCAGGTACCAGGGC CATCCTGGAAGCTGCTTGGCCACATCTCCAGGTACCAGGGC < 41bp 1 0.40087347823186 1 0.242212921380997 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975034 chr6:42975016 nonsynonymous SNV 0.998 2 3 hm5C_associated_SNPs_25421 0 0 1 0 2 Ribosome 1 0.500231643921088 1 0.999536712157825 hm5C_site_26070 DeepMRMD:1;iRNA_m5C:0.999536712157825 26071 chr18 46284706 46284706 1 + T C LGG 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCGAGCGCACCGGGGAGCGG < 41bp 1 0.543558768299891 1 0.198431521654129 experiment 0.912882463400218 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284706 nonsynonymous SNV 0.006 0 31 hm5C_associated_SNPs_25422 0 0 0 0 2 Cytosol 1 0.500231643906436 1 0.999536712187128 hm5C_site_26071 DeepMRMD:1;iRNA_m5C:0.999536712187128 26072 chr18 56376782 56376782 1 + A G LGG 56376765 + 56376745 56376785 41 AAAATGAATTACCATTAACACATGAGACCAAAAAGCTATAC AAAATGAATTACCATTAACACATGAGACCAAAAAGCTGTAC < 41bp 1 0.684068038843411 1 0.356383293867111 experiment 0.631863922313178 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MALT1 ENSG00000172175 CDS Human protein_coding chr18:56376765 chr18:56376782 synonymous SNV . 0 38 hm5C_associated_SNPs_25423 0 0 1 0 1 Nucleus 1 0.500231643920622 1 0.999536712158755 hm5C_site_26072 DeepMRMD:1;iRNA_m5C:0.999536712158755 26073 chr15 22940758 22940758 1 + T C LGG 22940756 + 22940736 22940776 41 GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAG GCACATCCTCCGGCAGCAGCCCCCAGTACAACATCTGCGAG < 41bp 1 0.662577255577754 1 0.475522994995117 experiment 0.674845488844492 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22940756 chr15:22940758 synonymous SNV . 0 23 hm5C_associated_SNPs_25424 0 0 1 0 2 Cytosol 1 0.500231095963713 1 0.999537808072574 hm5C_site_26073 DeepMRMD:1;iRNA_m5C:0.999537808072574 26074 chr9 116750643 116750643 1 + C T LGG 116750645 + 116750625 116750665 41 GAGCACCAAGGTGGAGGGCCCAGAGCCAGTGCCAGCCGAGG GAGCACCAAGGTGGAGGGTCCAGAGCCAGTGCCAGCCGAGG < 41bp 1 0.376288161095778 1 0.737951040267944 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116750645 chr9:116750643 synonymous SNV . 0 19 hm5C_associated_SNPs_25425 0 0 1 0 1 Cytosol 1 0.500231643921092 0.524097919464112 0.999536712157816 hm5C_site_26074 DeepMRMD:0.524097919464112;iRNA_m5C:0.999536712157816 26075 chr11 61488197 61488197 1 + C T LGG 61488204 + 61488184 61488224 41 GGTCTATAACCCGCACGAGGCCTGCTCCCTGAACCTGGTGG GGTCTATAACCCGTACGAGGCCTGCTCCCTGAACCTGGTGG < 41bp 1 0.0475604415823744 1 0.0148547887802124 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61488204 chr11:61488197 nonsynonymous SNV 0.925 0 14 hm5C_associated_SNPs_25427 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_26075 DeepMRMD:1;iRNA_m5C:0.999536712157815 26076 chr17 40840894 40840894 1 + G A LGG 40840909 + 40840889 40840929 41 TCCAGGTTGTCCCAAGCCAGCCAGTCGATGGGACTGCCACT TCCAGATTGTCCCAAGCCAGCCAGTCGATGGGACTGCCACT < 41bp 1 0.143350962241057 1 0.0739152729511261 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40840909 chr17:40840894 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_25428 0 0 0 0 1 Cytosol 1 0.500231583484555 1 0.99953683303089 hm5C_site_26076 DeepMRMD:1;iRNA_m5C:0.99953683303089 26077 chr1 44684030 44684030 1 + C T LIHC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAGCTTTATCTTCACGATGAT < 41bp 1 0.585835769957071 1 0.40985956788063 experiment 0.828328460085858 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684030 synonymous SNV . 0 32 hm5C_associated_SNPs_25430 0 0 1 0 2 chromatin 1 0.500231643471958 1 0.999536713056083 hm5C_site_26077 DeepMRMD:1;iRNA_m5C:0.999536713056083 26078 chr6 7393378 7393378 1 + T C LIHC 7393371 + 7393351 7393391 41 ACAGTCAAAGAGAAGGATGACATTCTGTTTGAAGACCTTCA ACAGTCAAAGAGAAGGATGACATTCTGCTTGAAGACCTTCA < 41bp 1 0.0809935570612929 1 0.0548428893089294 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7393371 chr6:7393378 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_25431 0 0 1 0 1 Ribosome 1 0.500231644821024 1 0.999536710357953 hm5C_site_26078 DeepMRMD:1;iRNA_m5C:0.999536710357953 26079 chr11 65402545 65402545 1 + A G LIHC 65402544 + 65402524 65402564 41 TTGCCGACATGGACCTGCTTCACCGCGTTGTGGCGCCTGGG TTGCCGACATGGACCTGCTTCGCCGCGTTGTGGCGCCTGGG < 41bp 1 0.301124734494946 1 0.275615364313126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402544 chr11:65402545 nonsynonymous SNV 0.846 1 22 hm5C_associated_SNPs_25432 0 0 1 0 1 Ribosome 1 0.500231644081389 1 0.999536711837222 hm5C_site_26079 DeepMRMD:1;iRNA_m5C:0.999536711837222 26080 chr12 44166748 44166748 1 + A G LIHC 44166754 + 44166734 44166774 41 TTATGAATTGAAGAATGTCACAAATAACTTTGATGAACGAC TTATGAATTGAAGAGTGTCACAAATAACTTTGATGAACGAC < 41bp 1 0.220668094774132 1 0.523156106472015 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166754 chr12:44166748 nonsynonymous SNV 0.651 1 15 hm5C_associated_SNPs_25433 0 0 0 0 1 Cytosol 1 0.500231627684715 0.95368778705597 0.99953674463057 hm5C_site_26080 DeepMRMD:0.95368778705597;iRNA_m5C:0.99953674463057 26081 chr3 50220186 50220186 1 + G T LIHC 50220185 + 50220165 50220205 41 AGAGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCGGGC AGAGGCGCCGCAGAGCCCCGCTGTGTACGCCCGCATCGGGC < 41bp 1 0.306522431741529 1 0.384940773248672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220185 chr3:50220186 synonymous SNV . 0 22 hm5C_associated_SNPs_25434 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643910676 1 0.999536712178648 hm5C_site_26081 DeepMRMD:1;iRNA_m5C:0.999536712178648 26082 chr6 33662786 33662786 1 + T C LIHC 33662799 - 33662779 33662819 41 AGCTTCATGGTGGAGTTGAGCTTGTCCTGGAGAATCCGAAT AGCTTCATGGTGGAGTTGAGCTTGTCCTGGAGAGTCCGAAT < 41bp 1 0.297605414094677 1 0.0317257046699524 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33662799 chr6:33662786 nonsynonymous SNV 0.980 0 34 hm5C_associated_SNPs_25435 0 0 1 0 0 Endoplasmic reticulum 1 0.500231649585072 1 0.999536700829855 hm5C_site_26082 DeepMRMD:1;iRNA_m5C:0.999536700829855 26083 chr9 131684577 131684577 1 + A G LIHC 131684567 + 131684547 131684587 41 TCTCCTCCCCACCAGGAGGCCGCGCTTAGAAGCCGCCCAGT TCTCCTCCCCACCAGGAGGCCGCGCTTAGAGGCCGCCCAGT < 41bp 1 0.620072620539156 1 0.854386687278748 experiment 0.759854758921687 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHYHD1 ENSG00000175287 UTR5 Human protein_coding chr9:131684567 chr9:131684577 . . 0 31 hm5C_associated_SNPs_25436 0 0 1 0 1 Nucleus 1 0.500231643921112 0.291226625442504 0.999536712157775 hm5C_site_26083 DeepMRMD:0.291226625442504;iRNA_m5C:0.999536712157775 26084 chr9 131684577 131684577 1 + A G LIHC 131684580 + 131684560 131684600 41 AGGAGGCCGCGCTTAGAAGCCGCCCAGTGCCCTGAGCGTCT AGGAGGCCGCGCTTAGAGGCCGCCCAGTGCCCTGAGCGTCT < 41bp 1 0.475974833098287 1 0.148257344961166 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHYHD1 ENSG00000175287 UTR5 Human protein_coding chr9:131684580 chr9:131684577 . . 0 18 hm5C_associated_SNPs_25437 0 0 1 0 1 Nucleus 1 0.50023164396099 1 0.99953671207802 hm5C_site_26084 DeepMRMD:1;iRNA_m5C:0.99953671207802 26085 chr10 102824597 102824597 1 + A G LIHC 102824602 + 102824582 102824622 41 GACCAGCTGAACTCTACAGGCATCCCCCAGCTGCGATCACT GACCAGCTGAACTCTGCAGGCATCCCCCAGCTGCGATCACT < 41bp 1 0.0360318745945146 1 0.0829581618309021 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824602 chr10:102824597 nonsynonymous SNV 0.062 2 16 hm5C_associated_SNPs_25438 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_26085 DeepMRMD:1;iRNA_m5C:0.999536712157816 26086 chr11 43413470 43413470 1 + A G LIHC 43413476 + 43413456 43413496 41 GGAGTATAGATGACATAGGTCACCTCATTCATGAAGGCCTA GGAGTATAGATGACGTAGGTCACCTCATTCATGAAGGCCTA < 41bp 1 0.330816033847462 1 0.0967796444892883 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTC17 ENSG00000052841 CDS Human protein_coding chr11:43413476 chr11:43413470 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_25439 0 0 1 0 1 Nucleus 1 0.500231643663783 1 0.999536712672434 hm5C_site_26086 DeepMRMD:1;iRNA_m5C:0.999536712672434 26087 chr17 20135097 20135097 1 + A G LIHC 20135081 + 20135061 20135101 41 TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGAAGTC TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGGAGTC < 41bp 1 0.311412313129149 1 0.462219029664993 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135081 chr17:20135097 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_25440 0 0 1 0 2 Cytosol 1 0.500231643921531 1 0.999536712156939 hm5C_site_26087 DeepMRMD:1;iRNA_m5C:0.999536712156939 26088 chr17 20135097 20135097 1 + A G LIHC 20135101 + 20135081 20135121 41 CAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGGCAGCTGA CAAGCTGGAGGAACAGGAGTCAGACCTGGAGAGGCAGCTGA < 41bp 1 0.199150433376046 1 0.477300196886063 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135101 chr17:20135097 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_25441 0 0 1 0 2 Cytosol 1 0.500231643911175 1 0.99953671217765 hm5C_site_26088 DeepMRMD:1;iRNA_m5C:0.99953671217765 26089 chr1 44684035 44684035 1 + A G LIHC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGGTGAT < 41bp 1 0.5892834539998 1 0.446810990571976 experiment 0.8214330920004 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684035 nonsynonymous SNV 0.953 1 37 hm5C_associated_SNPs_25442 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_26089 DeepMRMD:1;iRNA_m5C:0.999536712157815 26090 chr1 162039999 162039999 1 + A G LIHC 162040009 + 162039989 162040029 41 AACCTTGTGGACGATGGGCACGACCTGCGGATCCCCTTGCA AACCTTGTGGGCGATGGGCACGACCTGCGGATCCCCTTGCA < 41bp 1 0.348504996863193 1 0.467286974191666 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162040009 chr1:162039999 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_25443 0 0 1 0 1 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_26090 DeepMRMD:1;iRNA_m5C:0.999536712157815 26091 chr1 183091289 183091289 1 + C A LIHC 183091283 + 183091263 183091303 41 GGAGATTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTG GGAGATTCAACTGCAGGCACCTCCTCAGATTGCCAACCCTG < 41bp 1 0.127182575059071 1 0.131907910108566 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091283 chr1:183091289 synonymous SNV . 0 27 hm5C_associated_SNPs_25444 0 0 1 0 2 Ribosome 1 0.500231750544727 1 0.999536498910547 hm5C_site_26091 DeepMRMD:1;iRNA_m5C:0.999536498910547 26092 chr1 183091289 183091289 1 + C A LIHC 183091288 + 183091268 183091308 41 TTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTGTCCGT TTCAACTGCAGGCACCTCCTCAGATTGCCAACCCTGTCCGT < 41bp 1 0.431762214840578 1 0.547864556312561 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091288 chr1:183091289 synonymous SNV . 0 22 hm5C_associated_SNPs_25445 0 0 1 0 2 Ribosome 1 0.500231643921093 0.904270887374878 0.999536712157814 hm5C_site_26092 DeepMRMD:0.904270887374878;iRNA_m5C:0.999536712157814 26093 chr14 23240666 23240666 1 + C G LIHC 23240646 + 23240626 23240666 41 TTCTCTTCTCCCCTCAGGTCCTTTACGACAGACCTTTACCC TTCTCTTCTCCCCTCAGGTCCTTTACGACAGACCTTTACCG < 41bp 1 0.112358587509796 1 0.0848830938339233 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240646 chr14:23240666 nonsynonymous SNV 0.967 4 41 hm5C_associated_SNPs_25446 0 0 1 1 1 Cytosol 1 0.500231643924109 1 0.999536712151781 hm5C_site_26093 DeepMRMD:1;iRNA_m5C:0.999536712151781 26094 chr16 14972670 14972670 1 + C A LIHC 14972674 + 14972654 14972694 41 TGACCCAGGACAACGGCATTCTGACATTCTCAAACCTGGTA TGACCCAGGACAACGGAATTCTGACATTCTCAAACCTGGTA < 41bp 1 0.299131711310139 1 0.106501162052155 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972674 chr16:14972670 synonymous SNV . 0 17 hm5C_associated_SNPs_25447 0 0 0 0 2 Nucleus 1 0.500231643586799 1 0.999536712826403 hm5C_site_26094 DeepMRMD:1;iRNA_m5C:0.999536712826403 26095 chr16 14972670 14972670 1 + C A LIHC 14972678 + 14972658 14972698 41 CCAGGACAACGGCATTCTGACATTCTCAAACCTGGTAACGT CCAGGACAACGGAATTCTGACATTCTCAAACCTGGTAACGT < 41bp 1 0.0454582385137363 1 0.010689377784729 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972678 chr16:14972670 synonymous SNV . 0 13 hm5C_associated_SNPs_25448 0 0 0 0 2 Nucleus 1 0.500231642776422 1 0.999536714447156 hm5C_site_26095 DeepMRMD:1;iRNA_m5C:0.999536714447156 26096 chr16 14972670 14972670 1 + C A LIHC 14972682 + 14972662 14972702 41 GACAACGGCATTCTGACATTCTCAAACCTGGTAACGTGTTC GACAACGGAATTCTGACATTCTCAAACCTGGTAACGTGTTC < 41bp 1 0.556951166970654 1 0.936124444007874 experiment 0.886097666058692 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14972682 chr16:14972670 synonymous SNV . 0 9 hm5C_associated_SNPs_25449 0 0 0 0 2 Nucleus 1 0.500231643842026 0.127751111984252 0.999536712315949 hm5C_site_26096 DeepMRMD:0.127751111984252;iRNA_m5C:0.999536712315949 26097 chr18 12718622 12718622 1 + T C LIHC 12718624 + 12718604 12718644 41 CATATCAGCGTAATGATCTGCAGCTTCGTAGGTATGTTTCT CATATCAGCGTAATGATCCGCAGCTTCGTAGGTATGTTTCT < 41bp 1 0.416994522583494 1 0.128462642431259 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718624 chr18:12718622 nonsynonymous SNV 0.810 0 19 hm5C_associated_SNPs_25450 0 0 1 0 1 Ribosome 1 0.500227774030852 1 0.999544451938297 hm5C_site_26097 DeepMRMD:1;iRNA_m5C:0.999544451938297 26098 chr6 41754516 41754516 1 + C T LIHC 41754513 + 41754493 41754533 41 GGAACAGGGGAGACTGGACTCGACCGAACTGAAGGAAGGGA GGAACAGGGGAGACTGGACTCGATCGAACTGAAGGAAGGGA < 41bp 1 0.246959055571837 1 0.200345098972321 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41754513 chr6:41754516 synonymous SNV . 0 24 hm5C_associated_SNPs_25451 0 0 1 1 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26098 DeepMRMD:1;iRNA_m5C:0.999536712157815 26099 chr8 28574491 28574491 1 + T C LIHC 28574488 + 28574468 28574508 41 GTGGCCCAGTCCACCTTCTACACTGTCCAGTACAGACCTGG GTGGCCCAGTCCACCTTCTACACCGTCCAGTACAGACCTGG < 41bp 1 0.401406696436494 1 0.222441822290421 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28574488 chr8:28574491 synonymous SNV . 0 24 hm5C_associated_SNPs_25452 0 0 1 0 0 Endoplasmic reticulum 1 0.500231522729667 1 0.999536954540667 hm5C_site_26099 DeepMRMD:1;iRNA_m5C:0.999536954540667 26100 chr16 560761 560761 1 + A G LIHC 560748 + 560728 560768 41 CCCGGCGTCAGAAGGAGCTCCTGTGCAAGATGGAGAGGGAG CCCGGCGTCAGAAGGAGCTCCTGTGCAAGATGGGGAGGGAG < 41bp 1 0.159472905460415 1 0.50566828250885 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:560748 chr16:560761 nonsynonymous SNV 0.997 3 34 hm5C_associated_SNPs_25453 0 0 1 0 1 Ribosome 1 0.500231643834503 0.9886634349823 0.999536712330994 hm5C_site_26100 DeepMRMD:0.9886634349823;iRNA_m5C:0.999536712330994 26101 chr12 31244703 31244703 1 + C T LIHC 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCTGCGG < 41bp 1 0.521973156428399 1 0.369667828083038 experiment 0.956053687143202 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244703 synonymous SNV . 0 37 hm5C_associated_SNPs_25455 0 0 1 0 1 Cytosol 1 0.500231650448456 1 0.999536699103089 hm5C_site_26101 DeepMRMD:1;iRNA_m5C:0.999536699103089 26102 chr12 31244703 31244703 1 + C T LIHC 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATGCGGCCACTCGGCAGGCTGCGGGCAT < 41bp 1 0.238329363029276 1 0.0572096407413483 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244703 synonymous SNV . 0 33 hm5C_associated_SNPs_25456 0 0 1 0 1 Cytosol 1 0.500232372141036 1 0.999535255717927 hm5C_site_26102 DeepMRMD:1;iRNA_m5C:0.999535255717927 26103 chr20 2846064 2846064 1 + A G LIHC 2846046 + 2846026 2846066 41 AAGCCCAGCTTTCCTGCAGGCTCTGGTGGCTGAAGCTGACT AAGCCCAGCTTTCCTGCAGGCTCTGGTGGCTGAAGCTGGCT < 41bp 1 0.250115938812967 1 0.0568047761917114 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846046 chr20:2846064 nonsynonymous SNV 0.998 0 39 hm5C_associated_SNPs_25457 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_26103 DeepMRMD:1;iRNA_m5C:0.999536712157815 26104 chr1 155255677 155255677 1 + T C LIHC 155255657 + 155255637 155255677 41 TCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAGATGTACT TCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAGATGTACC < 41bp 1 0.391384849288485 1 0.348303824663162 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HCN3 ENSG00000143630 CDS Human protein_coding chr1:155255657 chr1:155255677 nonsynonymous SNV 1.000 5 41 hm5C_associated_SNPs_25458 0 0 1 0 1 chromatin 1 0.500231643923139 1 0.999536712153721 hm5C_site_26104 DeepMRMD:1;iRNA_m5C:0.999536712153721 26105 chr2 211456652 211456652 1 + T C LIHC 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCCGGAA < 41bp 1 0.253028613643239 1 0.100969910621643 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456652 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_25459 0 0 0 0 2 Nucleus 1 0.500231643921088 1 0.999536712157825 hm5C_site_26105 DeepMRMD:1;iRNA_m5C:0.999536712157825 26106 chr2 211456652 211456652 1 + T C LIHC 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCCGGAAAC < 41bp 1 0.0542677200320224 1 0.109399348497391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456652 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_25460 0 0 0 0 2 Nucleus 1 0.500231643915703 1 0.999536712168594 hm5C_site_26106 DeepMRMD:1;iRNA_m5C:0.999536712168594 26107 chr2 220412321 220412321 1 + A G LIHC 220412324 + 220412304 220412344 41 CCGAGAGCGGGTGCTAGAGACACAGCTGAGTGCTGGGGCGA CCGAGAGCGGGTGCTAGGGACACAGCTGAGTGCTGGGGCGA < 41bp 1 0.599138843075432 1 0.190271288156509 experiment 0.801722313849135 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM198 ENSG00000188760 CDS Human protein_coding chr2:220412324 chr2:220412321 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_25461 0 0 1 0 1 chromatin 1 0.500231638125916 1 0.999536723748167 hm5C_site_26107 DeepMRMD:1;iRNA_m5C:0.999536723748167 26108 chr3 183899712 183899712 1 + C T LIHC 183899728 + 183899708 183899748 41 CAACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTA CAACTAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTA < 41bp 1 0.104410144174793 1 0.0590460896492004 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899728 chr3:183899712 synonymous SNV . 0 5 hm5C_associated_SNPs_25462 0 0 1 0 1 Ribosome 1 0.500231493869005 1 0.999537012261989 hm5C_site_26108 DeepMRMD:1;iRNA_m5C:0.999537012261989 26109 chr3 183899712 183899712 1 + C T LIHC 183899729 + 183899709 183899749 41 AACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAG AACTAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAG < 41bp 1 0.0314988284821927 1 0.0591250956058502 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899729 chr3:183899712 synonymous SNV . 0 4 hm5C_associated_SNPs_25463 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_26109 DeepMRMD:1;iRNA_m5C:0.999536712157814 26110 chr3 183899712 183899712 1 + C T LIHC 183899730 + 183899710 183899750 41 ACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGT ACTAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGT < 41bp 1 0.312669546902954 1 0.0458435118198395 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899730 chr3:183899712 synonymous SNV . 0 3 hm5C_associated_SNPs_25464 0 0 1 0 1 Ribosome 1 0.500231528902986 1 0.999536942194029 hm5C_site_26110 DeepMRMD:1;iRNA_m5C:0.999536942194029 26111 chr6 168352589 168352589 1 + T C LIHC 168352591 + 168352571 168352611 41 TCCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGA TCCTCGGGGGACAGTCTGCCCCCCGACCCGTGGAAGCGGGA < 41bp 1 0.185459948766907 1 0.302536576986313 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352591 chr6:168352589 nonsynonymous SNV 0.284 4 19 hm5C_associated_SNPs_25465 0 0 1 0 0 unknown 1 0.500231632048221 1 0.999536735903558 hm5C_site_26111 DeepMRMD:1;iRNA_m5C:0.999536735903558 26112 chr6 168352589 168352589 1 + T C LIHC 168352592 + 168352572 168352612 41 CCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGAC CCTCGGGGGACAGTCTGCCCCCCGACCCGTGGAAGCGGGAC < 41bp 1 0.439541709094786 1 0.618969440460205 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352592 chr6:168352589 nonsynonymous SNV 0.284 4 18 hm5C_associated_SNPs_25466 0 0 1 0 0 unknown 1 0.500231643921083 0.76206111907959 0.999536712157835 hm5C_site_26112 DeepMRMD:0.76206111907959;iRNA_m5C:0.999536712157835 26113 chr6 168352589 168352589 1 + T C LIHC 168352593 + 168352573 168352613 41 CTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGACG CTCGGGGGACAGTCTGCCCCCCGACCCGTGGAAGCGGGACG < 41bp 1 0.0609266240541775 1 0.402182877063751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352593 chr6:168352589 nonsynonymous SNV 0.284 4 17 hm5C_associated_SNPs_25467 0 0 1 0 0 unknown 1 0.500231637067921 1 0.999536725864159 hm5C_site_26113 DeepMRMD:1;iRNA_m5C:0.999536725864159 26114 chr16 29828316 29828316 1 + A G LIHC 29828307 + 29828287 29828327 41 ATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAGGAAA ATCCGATGAGGAGCCGGAGGCCAAAGAAGGGGAAGAGGAAA < 41bp 1 0.413961757963961 1 0.692412078380585 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828307 chr16:29828316 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_25470 0 0 1 0 1 Ribosome 1 0.500231643921018 0.61517584323883 0.999536712157965 hm5C_site_26114 DeepMRMD:0.61517584323883;iRNA_m5C:0.999536712157965 26115 chr19 10794120 10794120 1 + C T LIHC 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCTTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG < 41bp 1 0.410535665238941 1 0.0538612008094788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794120 synonymous SNV . 0 5 hm5C_associated_SNPs_25471 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26115 DeepMRMD:1;iRNA_m5C:0.999536712157815 26116 chr19 50733867 50733867 1 + A G LIHC 50733861 + 50733841 50733881 41 TTCTACCAGCTGCTGGGGGGCGCTGGAGAGCAGCTCAAAGG TTCTACCAGCTGCTGGGGGGCGCTGGGGAGCAGCTCAAAGG < 41bp 1 0.294320371360694 1 0.493166923522949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50733861 chr19:50733867 synonymous SNV . 0 27 hm5C_associated_SNPs_25472 0 0 1 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26116 DeepMRMD:1;iRNA_m5C:0.999536712157815 26117 chr12 104327795 104327795 1 + A G LIHC 104327808 + 104327788 104327828 41 AGAGAAGAGTTGGTTAAAAACCTTGGTACCATAGCCAAATC AGAGAAGGGTTGGTTAAAAACCTTGGTACCATAGCCAAATC < 41bp 1 0.280375041485233 1 0.0689288377761841 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104327808 chr12:104327795 nonsynonymous SNV 0.993 3 8 hm5C_associated_SNPs_25473 0 0 1 0 0 Nucleus 1 0.500231643943073 1 0.999536712113854 hm5C_site_26117 DeepMRMD:1;iRNA_m5C:0.999536712113854 26118 chr14 73577721 73577721 1 + T C LIHC 73577703 + 73577683 73577723 41 CTGAAACCTACTCTGAGGCCCATCAGCTCTGCTCCATCTGT CTGAAACCTACTCTGAGGCCCATCAGCTCTGCTCCATCCGT < 41bp 1 0.376007579173383 1 0.136591106653214 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73577703 chr14:73577721 synonymous SNV . 0 39 hm5C_associated_SNPs_25474 0 0 1 0 0 Nucleus 1 0.500231643921557 1 0.999536712156885 hm5C_site_26118 DeepMRMD:1;iRNA_m5C:0.999536712156885 26119 chr19 36580096 36580096 1 + G A LIHC 36580091 + 36580071 36580111 41 CTGCCGGCCCTGCCAGGGTTCGGATGGACTACACTTTGTCC CTGCCGGCCCTGCCAGGGTTCGGATAGACTACACTTTGTCC < 41bp 1 0.280655710206016 1 0.71817946434021 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36580091 chr19:36580096 nonsynonymous SNV 0.834 2 26 hm5C_associated_SNPs_25475 0 0 1 0 0 Nucleus 1 0.500231643921092 0.56364107131958 0.999536712157815 hm5C_site_26119 DeepMRMD:0.56364107131958;iRNA_m5C:0.999536712157815 26120 chr1 231401763 231401763 1 + T C LIHC 231401783 + 231401763 231401803 41 TTCTGAATATTGTGATGGAGCCATTTTTTAAAAGAGAAGTT CTCTGAATATTGTGATGGAGCCATTTTTTAAAAGAGAAGTT < 41bp 1 0.0710122361272369 1 0.0778032243251801 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401783 chr1:231401763 nonsynonymous SNV 0.999 5 1 hm5C_associated_SNPs_25476 0 0 1 0 1 Cytosol 1 0.500231644540886 1 0.999536710918229 hm5C_site_26120 DeepMRMD:1;iRNA_m5C:0.999536710918229 26121 chr11 61507970 61507970 1 + T C LIHC 61507955 + 61507935 61507975 41 CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGGG CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCACCTGGG < 41bp 1 0.128298694513691 1 0.423377007246017 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507955 chr11:61507970 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_25477 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643911781 1 0.999536712176438 hm5C_site_26121 DeepMRMD:1;iRNA_m5C:0.999536712176438 26122 chr11 61507970 61507970 1 + T C LIHC 61507980 + 61507960 61508000 41 TACTTTGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT TACTTTGCCACCTGGGGCGACAACAAGGCCTTCAATGAGGT < 41bp 1 0.176096634775183 1 0.271728843450546 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507980 chr11:61507970 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_25478 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921201 1 0.999536712157598 hm5C_site_26122 DeepMRMD:1;iRNA_m5C:0.999536712157598 26123 chr11 66050524 66050524 1 + T C LIHC 66050523 + 66050503 66050543 41 CAGCTGGTGGTCCCAGAATACTCCATCCACGGCCTCTTCTG CAGCTGGTGGTCCCAGAATACCCCATCCACGGCCTCTTCTG < 41bp 1 0.529103487089583 1 0.119697898626328 experiment 0.941793025820834 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66050523 chr11:66050524 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_25479 0 0 1 1 2 chromatin 1 0.500231643921085 1 0.99953671215783 hm5C_site_26123 DeepMRMD:1;iRNA_m5C:0.99953671215783 26124 chr12 53671310 53671310 1 + C T LIHC 53671316 + 53671296 53671336 41 GAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT GAGGAATTTGAAGTTAATGACCTGAACTATGAAGATAAACT < 41bp 1 0.0664077085571632 1 0.0537891685962677 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671316 chr12:53671310 synonymous SNV . 0 15 hm5C_associated_SNPs_25480 0 0 1 0 1 Nucleus 1 0.500231643965559 1 0.999536712068882 hm5C_site_26124 DeepMRMD:1;iRNA_m5C:0.999536712068882 26125 chr19 757491 757491 1 + A G LIHC 757482 + 757462 757502 41 CCCCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGG CCCCGGCCCACCTCGGTCCACGCCCCTGGGGGAGAACGTGG < 41bp 1 0.325837735822875 1 0.0321909785270691 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757482 chr19:757491 nonsynonymous SNV 0.040 1 30 hm5C_associated_SNPs_25481 0 0 0 0 0 nucleus 1 0.500231643991923 1 0.999536712016154 hm5C_site_26125 DeepMRMD:1;iRNA_m5C:0.999536712016154 26126 chr19 757491 757491 1 + A G LIHC 757484 + 757464 757504 41 CCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTT CCGGCCCACCTCGGTCCACGCCCCTGGGGGAGAACGTGGTT < 41bp 1 0.251966756768817 1 0.0992105603218079 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757484 chr19:757491 nonsynonymous SNV 0.040 1 28 hm5C_associated_SNPs_25482 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26126 DeepMRMD:1;iRNA_m5C:0.999536712157815 26127 chr19 757491 757491 1 + A G LIHC 757485 + 757465 757505 41 CGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTG CGGCCCACCTCGGTCCACGCCCCTGGGGGAGAACGTGGTTG < 41bp 1 0.168517092063915 1 0.336815595626831 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757485 chr19:757491 nonsynonymous SNV 0.040 1 27 hm5C_associated_SNPs_25483 0 0 0 0 0 nucleus 1 0.500231613919527 1 0.999536772160947 hm5C_site_26127 DeepMRMD:1;iRNA_m5C:0.999536772160947 26128 chr19 757491 757491 1 + A G LIHC 757486 + 757466 757506 41 GGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTGA GGCCCACCTCGGTCCACGCCCCTGGGGGAGAACGTGGTTGA < 41bp 1 0.338270452452966 1 0.434295922517776 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757486 chr19:757491 nonsynonymous SNV 0.040 1 26 hm5C_associated_SNPs_25484 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26128 DeepMRMD:1;iRNA_m5C:0.999536712157815 26129 chr20 17956503 17956503 1 + A G LIHC 17956504 + 17956484 17956524 41 AAGTGCTGTTCAACATGAAACCTTAAACTATATAGGTCTGC AAGTGCTGTTCAACATGAAGCCTTAAACTATATAGGTCTGC < 41bp 1 0.0873387045711358 1 0.141920626163483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MGME1 ENSG00000125871 CDS Human protein_coding chr20:17956504 chr20:17956503 nonsynonymous SNV 0.670 0 20 hm5C_associated_SNPs_25486 0 0 1 0 1 chromatin 1 0.500231640695311 1 0.999536718609378 hm5C_site_26129 DeepMRMD:1;iRNA_m5C:0.999536718609378 26130 chr8 17794745 17794745 1 + G A LIHC 17794729 + 17794709 17794749 41 GAAAGTGATAAAAGAGTAACCAATGATATTTCTCCGGAGTC GAAAGTGATAAAAGAGTAACCAATGATATTTCTCCGAAGTC < 41bp 1 0.301609957598414 1 0.36363285779953 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17794729 chr8:17794745 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_25487 0 0 1 0 0 Nucleus 1 0.500231643921127 1 0.999536712157745 hm5C_site_26130 DeepMRMD:1;iRNA_m5C:0.999536712157745 26131 chr12 109637346 109637346 1 + G C LIHC 109637339 + 109637319 109637359 41 GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT GGCCACGTTGAGGCTGGGAGCAGCTACCCTGAGATGGAGGT < 41bp 1 0.226173131323838 1 0.70685338973999 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109637339 chr12:109637346 nonsynonymous SNV 0.876 4 28 hm5C_associated_SNPs_25488 0 0 1 0 1 Nucleus 1 0.500231644032856 0.58629322052002 0.999536711934288 hm5C_site_26131 DeepMRMD:0.58629322052002;iRNA_m5C:0.999536711934288 26132 chr12 109637347 109637347 1 + C T LIHC 109637339 + 109637319 109637359 41 GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT GGCCACGTTGAGGCTGGGAGCAGCTACGTTGAGATGGAGGT < 41bp 1 0.227477320140465 1 0.43122798204422 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109637339 chr12:109637347 nonsynonymous SNV 0.868 4 29 hm5C_associated_SNPs_25489 0 0 1 0 1 Nucleus 1 0.500231644037488 1 0.999536711925025 hm5C_site_26132 DeepMRMD:1;iRNA_m5C:0.999536711925025 26133 chr14 102478246 102478246 1 + A T LIHC 102478245 + 102478225 102478265 41 ATCAGATCACCCAGATCAATCATGGCCTGATGATGGTGGGG ATCAGATCACCCAGATCAATCTTGGCCTGATGATGGTGGGG < 41bp 1 0.179868243690652 1 0.175550997257233 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478245 chr14:102478246 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_25490 0 0 1 0 1 Cytosol 1 0.500231643632608 1 0.999536712734785 hm5C_site_26133 DeepMRMD:1;iRNA_m5C:0.999536712734785 26134 chr14 102478246 102478246 1 + A T LIHC 102478250 + 102478230 102478270 41 ATCACCCAGATCAATCATGGCCTGATGATGGTGGGGCCCTC ATCACCCAGATCAATCTTGGCCTGATGATGGTGGGGCCCTC < 41bp 1 0.115055402371681 1 0.0796366631984711 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478250 chr14:102478246 nonsynonymous SNV 0.989 4 17 hm5C_associated_SNPs_25491 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26134 DeepMRMD:1;iRNA_m5C:0.999536712157815 26135 chr14 102478246 102478246 1 + A T LIHC 102478266 + 102478246 102478286 41 ATGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGC TTGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGC < 41bp 1 0.00966681653528495 1 0.0681478083133698 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478266 chr14:102478246 nonsynonymous SNV 0.989 4 1 hm5C_associated_SNPs_25492 0 0 1 0 1 Cytosol 1 0.500231643890435 1 0.99953671221913 hm5C_site_26135 DeepMRMD:1;iRNA_m5C:0.99953671221913 26136 chr18 13056654 13056654 1 + C T LIHC 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTCTGTTGGTACAAATTGTGGAATTGAACCAT < 41bp 1 0.155086472082672 1 0.361524403095245 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056654 synonymous SNV . 0 25 hm5C_associated_SNPs_25493 0 0 1 0 1 Nucleus 1 0.500231643909865 1 0.99953671218027 hm5C_site_26136 DeepMRMD:1;iRNA_m5C:0.99953671218027 26137 chr1 110561690 110561690 1 + G C LIHC 110561676 + 110561656 110561696 41 CTCTCTTACCTTTCCAGGGTCGTCTACTCAATTTGAGCTGC CTCTCTTACCTTTCCAGGGTCGTCTACTCAATTTCAGCTGC < 41bp 1 0.146174245757521 1 0.0428646504878998 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110561676 chr1:110561690 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_25494 0 0 1 0 1 Ribosome 1 0.500231643920484 1 0.999536712159032 hm5C_site_26137 DeepMRMD:1;iRNA_m5C:0.999536712159032 26138 chr3 112714019 112714019 1 + A G LIHC 112714008 + 112713988 112714028 41 ACAAAGAAAATGAATTTTTTCAAAGTTGGAAAACATTTTAC ACAAAGAAAATGAATTTTTTCAAAGTTGGAAGACATTTTAC < 41bp 1 0.597510830595113 1 0.735539615154266 experiment 0.804978338809775 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112714008 chr3:112714019 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_25496 0 0 1 2 2 Ribosome 1 0.500231377651813 0.528920769691468 0.999537244696374 hm5C_site_26138 DeepMRMD:0.528920769691468;iRNA_m5C:0.999537244696374 26139 chr10 51580576 51580576 1 + T C LIHC 51580558 + 51580538 51580578 41 CATGTATGTGTTTCCTAGGTCAAAGCTCAGATTCACAGTTG CATGTATGTGTTTCCTAGGTCAAAGCTCAGATTCACAGCTG < 41bp 1 0.393509744043188 1 0.444865673780441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NCOA4 ENSG00000138293 CDS Human other chr10:51580558 chr10:51580576 synonymous SNV . 0 39 hm5C_associated_SNPs_25497 0 0 1 0 1 Cytosol 1 0.500234790166692 1 0.999530419666615 hm5C_site_26139 DeepMRMD:1;iRNA_m5C:0.999530419666615 26140 chr1 16255127 16255127 1 + G C LIHC 16255107 + 16255087 16255127 41 CTATACAAAAAATGAAAAGACAGATAAAGAACGAACTTTTG CTATACAAAAAATGAAAAGACAGATAAAGAACGAACTTTTC < 41bp 1 0.182173760643208 1 0.427123665809631 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16255107 chr1:16255127 nonsynonymous SNV 0.964 2 41 hm5C_associated_SNPs_25499 0 0 1 0 0 Endoplasmic reticulum 1 0.500231670293546 1 0.999536659412909 hm5C_site_26140 DeepMRMD:1;iRNA_m5C:0.999536659412909 26141 chr1 16255127 16255127 1 + G C LIHC 16255122 + 16255102 16255142 41 AAAGACAGATAAAGAACGAACTTTTGATCCGGAGAGAGTGG AAAGACAGATAAAGAACGAACTTTTCATCCGGAGAGAGTGG < 41bp 1 0.0154575246719979 1 0.0648849904537201 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16255122 chr1:16255127 nonsynonymous SNV 0.964 2 26 hm5C_associated_SNPs_25500 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643214883 1 0.999536713570234 hm5C_site_26141 DeepMRMD:1;iRNA_m5C:0.999536713570234 26142 chr1 16255127 16255127 1 + G C LIHC 16255130 + 16255110 16255150 41 ATAAAGAACGAACTTTTGATCCGGAGAGAGTGGAGAGAGAG ATAAAGAACGAACTTTTCATCCGGAGAGAGTGGAGAGAGAG < 41bp 1 0.463234965377431 1 0.512542724609375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16255130 chr1:16255127 nonsynonymous SNV 0.964 2 18 hm5C_associated_SNPs_25501 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920929 0.97491455078125 0.999536712158141 hm5C_site_26142 DeepMRMD:0.97491455078125;iRNA_m5C:0.999536712158141 26143 chr16 70366883 70366883 1 + A C LIHC 70366872 + 70366852 70366892 41 CCAACTCTCCTTCCTGCAGGCATTGATGTTGAACAAGTGTC CCAACTCTCCTTCCTGCAGGCATTGATGTTGCACAAGTGTC < 41bp 1 0.0573304697187674 1 0.097764253616333 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX19B ENSG00000157349 CDS Human protein_coding chr16:70366872 chr16:70366883 nonsynonymous SNV 0.884 3 32 hm5C_associated_SNPs_25503 0 0 0 0 1 chromatin 1 0.500231643921087 1 0.999536712157826 hm5C_site_26143 DeepMRMD:1;iRNA_m5C:0.999536712157826 26144 chr17 36508877 36508877 1 + C T LIHC 36508864 + 36508844 36508884 41 AGAGCTGGCTGCTTCAGCTGCGAGCCTGACAGACATGGGAG AGAGCTGGCTGCTTCAGCTGCGAGCCTGACAGATATGGGAG < 41bp 1 0.453903005585478 1 0.43446296453476 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOCS7 ENSG00000174111 CDS Human other chr17:36508864 chr17:36508877 synonymous SNV . 0 34 hm5C_associated_SNPs_25504 0 0 1 0 1 Cytosol 1 0.500231616806912 1 0.999536766386175 hm5C_site_26144 DeepMRMD:1;iRNA_m5C:0.999536766386175 26145 chr17 36508877 36508877 1 + C T LIHC 36508869 + 36508849 36508889 41 TGGCTGCTTCAGCTGCGAGCCTGACAGACATGGGAGGCTCT TGGCTGCTTCAGCTGCGAGCCTGACAGATATGGGAGGCTCT < 41bp 1 0.124432649270899 1 0.141251176595688 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOCS7 ENSG00000174111 CDS Human other chr17:36508869 chr17:36508877 synonymous SNV . 0 29 hm5C_associated_SNPs_25505 0 0 1 0 1 Cytosol 1 0.500231659041027 1 0.999536681917945 hm5C_site_26145 DeepMRMD:1;iRNA_m5C:0.999536681917945 26146 chr16 2122314 2122314 1 + T C LIHC 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATCCTTACTTCCCCTTGCAGTGTGGACCAGC < 41bp 1 0.110965823793677 1 0.0362900495529175 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122314 nonsynonymous SNV 0.919 2 14 hm5C_associated_SNPs_25507 0 0 1 0 2 Endoplasmic reticulum 1 0.50023165069357 1 0.999536698612861 hm5C_site_26146 DeepMRMD:1;iRNA_m5C:0.999536698612861 26147 chr17 7751676 7751676 1 + C T LIHC 7751660 + 7751640 7751680 41 GGAGGACCAGTTTGAGGAGCCAGCCGAATTCAAGATCCTAC GGAGGACCAGTTTGAGGAGCCAGCCGAATTCAAGATTCTAC < 41bp 1 0.109019703744358 1 0.211762398481369 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7751660 chr17:7751676 synonymous SNV . 0 37 hm5C_associated_SNPs_25508 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26147 DeepMRMD:1;iRNA_m5C:0.999536712157815 26148 chr11 128680417 128680417 1 + G A LIHC 128680424 + 128680404 128680444 41 AGCGCCAACGCCAGCTGTATCACCTGGGAGGGGACCAACGG AGCGCCAACGCCAACTGTATCACCTGGGAGGGGACCAACGG < 41bp 1 0.693338976122021 1 0.307362854480743 experiment 0.613322047755958 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FLI1 ENSG00000151702 CDS Human protein_coding chr11:128680424 chr11:128680417 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_25509 0 0 0 0 1 Endoplasmic reticulum 1 0.500231536672257 1 0.999536926655487 hm5C_site_26148 DeepMRMD:1;iRNA_m5C:0.999536926655487 26149 chr1 39906758 39906758 1 + A G LIHC 39906771 + 39906751 39906791 41 CCTGTGGAGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATT CCTGTGGGGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATT < 41bp 1 0.0909447978180288 1 0.179688930511475 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39906771 chr1:39906758 synonymous SNV . 0 8 hm5C_associated_SNPs_25510 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157817 hm5C_site_26149 DeepMRMD:1;iRNA_m5C:0.999536712157817 26150 chr1 39906758 39906758 1 + A G LIHC 39906772 + 39906752 39906792 41 CTGTGGAGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATTG CTGTGGGGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATTG < 41bp 1 0.31123683237279 1 0.25485622882843 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39906772 chr1:39906758 synonymous SNV . 0 7 hm5C_associated_SNPs_25511 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643935629 1 0.999536712128743 hm5C_site_26150 DeepMRMD:1;iRNA_m5C:0.999536712128743 26151 chr12 110572803 110572803 1 + A G LIHC 110572783 + 110572763 110572803 41 CAATGGAAGAAGAAAAGGATCAGCTCATTAAGAGAGTTGAA CAATGGAAGAAGAAAAGGATCAGCTCATTAAGAGAGTTGAG < 41bp 1 0.326402245419139 1 0.185454398393631 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT81 ENSG00000122970 CDS Human protein_coding chr12:110572783 chr12:110572803 synonymous SNV . 0 41 hm5C_associated_SNPs_25512 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26151 DeepMRMD:1;iRNA_m5C:0.999536712157815 26152 chr17 4435912 4435912 1 + G A LIHC 4435915 + 4435895 4435935 41 CTAAAAGGGGTCATGCCGACCAGCTCGGGGACCAGCTCAAG CTAAAAGGGGTCATGCCAACCAGCTCGGGGACCAGCTCAAG < 41bp 1 0.414634859029817 1 0.606853783130646 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4435915 chr17:4435912 nonsynonymous SNV 0.257 2 18 hm5C_associated_SNPs_25513 0 0 0 0 2 Ribosome 1 0.500231643921092 0.786292433738708 0.999536712157815 hm5C_site_26152 DeepMRMD:0.786292433738708;iRNA_m5C:0.999536712157815 26153 chr1 110586378 110586378 1 + T C LIHC 110586381 + 110586361 110586401 41 GTCTGGAGGGGGAGACGTTTCCCCTGGAACGGGATGAAGTG GTCTGGAGGGGGAGACGCTTCCCCTGGAACGGGATGAAGTG < 41bp 1 0.559527634866204 1 0.131755471229553 experiment 0.880944730267591 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110586381 chr1:110586378 nonsynonymous SNV 0.936 1 18 hm5C_associated_SNPs_25514 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26153 DeepMRMD:1;iRNA_m5C:0.999536712157815 26154 chr1 57161707 57161707 1 + G A LIHC 57161696 + 57161676 57161716 41 CCCTCCCATTTGATGATGAGCATGTACCTACGTTATTTAAG CCCTCCCATTTGATGATGAGCATGTACCTACATTATTTAAG < 41bp 1 0.165754189076031 1 0.0326279103755951 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57161696 chr1:57161707 synonymous SNV . 0 32 hm5C_associated_SNPs_25515 0 0 1 0 1 Endoplasmic reticulum 1 0.500214967655779 1 0.999570064688442 hm5C_site_26154 DeepMRMD:1;iRNA_m5C:0.999570064688442 26155 chr16 2818220 2818220 1 + A G LIHC 2818203 + 2818183 2818223 41 TCCTCCTCCTCCTCTGGCTCCAGTTCTAGTGACTCAGAGGG TCCTCCTCCTCCTCTGGCTCCAGTTCTAGTGACTCAGGGGG < 41bp 1 0.0943534530357266 1 0.364237546920776 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2818203 chr16:2818220 nonsynonymous SNV 0.992 3 38 hm5C_associated_SNPs_25516 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26155 DeepMRMD:1;iRNA_m5C:0.999536712157815 26156 chr17 17697512 17697512 1 + T C LIHC 17697528 + 17697508 17697548 41 CCCCTTCAGAAGGACAAGCTCCCTGAGAACCTGCTGTCGGA CCCCCTCAGAAGGACAAGCTCCCTGAGAACCTGCTGTCGGA < 41bp 1 0.134390707037509 1 0.0345527231693268 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17697528 chr17:17697512 nonsynonymous SNV 0.852 2 5 hm5C_associated_SNPs_25517 0 0 1 0 0 chromatin 1 0.500231643928116 1 0.999536712143767 hm5C_site_26156 DeepMRMD:1;iRNA_m5C:0.999536712143767 26157 chr1 114500821 114500821 1 + A G LIHC 114500816 + 114500796 114500836 41 GCACCAGTTCCTGGAGTTGCCCAGCAGGGTGTTTCCTTGCA GCACCAGTTCCTGGAGTTGCCCAGCGGGGTGTTTCCTTGCA < 41bp 1 0.402826960979946 1 0.692572891712189 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114500816 chr1:114500821 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_25518 0 0 1 0 1 Cytosol 1 0.500231643962501 0.614854216575622 0.999536712074997 hm5C_site_26157 DeepMRMD:0.614854216575622;iRNA_m5C:0.999536712074997 26158 chr2 47205974 47205974 1 + C T LIHC 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCTGCTT < 41bp 1 0.535527243426574 1 0.727853000164032 experiment 0.928945513146853 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205974 nonsynonymous SNV 0.001 0 37 hm5C_associated_SNPs_25519 0 0 1 0 2 Nucleus 1 0.500231894356016 0.544293999671936 0.999536211287969 hm5C_site_26158 DeepMRMD:0.544293999671936;iRNA_m5C:0.999536211287969 26159 chr11 44129594 44129594 1 + T C LIHC 44129604 + 44129584 44129624 41 ATCTATGCTCTGAAAAAGTACGTGGATGACTTTGGCGTCTC ATCTATGCTCCGAAAAAGTACGTGGATGACTTTGGCGTCTC < 41bp 1 0.524672680628143 1 0.424795746803284 experiment 0.950654638743714 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129604 chr11:44129594 nonsynonymous SNV 0.994 3 11 hm5C_associated_SNPs_25520 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_26159 DeepMRMD:1;iRNA_m5C:0.999536712157815 26160 chr14 102467962 102467962 1 + A G LIHC 102467953 + 102467933 102467973 41 TGATCCGTGGCTGGGATGACCTCTTCAACAAGGTCAAAGAA TGATCCGTGGCTGGGATGACCTCTTCAACGAGGTCAAAGAA < 41bp 1 0.0595520588962542 1 0.142981112003326 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102467953 chr14:102467962 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_25521 0 0 1 0 2 Cytosol 1 0.500231551734263 1 0.999536896531474 hm5C_site_26160 DeepMRMD:1;iRNA_m5C:0.999536896531474 26161 chr16 89977057 89977057 1 + A G LIHC 89977054 + 89977034 89977074 41 TCTTCTTCCGGTCACTGTTGCCAAACTATACCATGGAGGTA TCTTCTTCCGGTCACTGTTGCCAGACTATACCATGGAGGTA < 41bp 1 0.513072203492334 1 0.279062956571579 experiment 0.973855593015332 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89977054 chr16:89977057 nonsynonymous SNV 0.021 2 24 hm5C_associated_SNPs_25522 0 0 1 0 2 Cytosol 1 0.500231651430034 1 0.999536697139932 hm5C_site_26161 DeepMRMD:1;iRNA_m5C:0.999536697139932 26162 chrX 107868981 107868981 1 + A G LIHC 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCCTGGACAGCCAGGTCTTATAGGGCCTCCTGGACTT < 41bp 1 0.189380689070365 1 0.0282460153102875 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868981 synonymous SNV . 0 29 hm5C_associated_SNPs_25523 0 0 0 0 2 Ribosome 1 0.500231643933236 1 0.999536712133527 hm5C_site_26162 DeepMRMD:1;iRNA_m5C:0.999536712133527 26163 chr7 128119312 128119312 1 + T G LIHC 128119323 + 128119303 128119343 41 CGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT CGAATTCCCGGAGCTGGCACCTAGCCAAAATCAAAATCATT < 41bp 1 0.134992028320404 1 0.147854059934616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METTL2B ENSG00000165055 CDS Human protein_coding chr7:128119323 chr7:128119312 synonymous SNV . 0 10 hm5C_associated_SNPs_25524 0 0 1 0 0 Ribosome 1 0.50023053378719 1 0.999538932425621 hm5C_site_26163 DeepMRMD:1;iRNA_m5C:0.999538932425621 26164 chr11 125448940 125448940 1 + G T LIHC 125448950 + 125448930 125448970 41 TCAACCTTTTGCTGCAGGCTCTTTTCCTCATTCAGGTGAGA TCAACCTTTTTCTGCAGGCTCTTTTCCTCATTCAGGTGAGA < 41bp 1 0.0381180973172745 1 0.032526969909668 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EI24 ENSG00000149547 CDS Human protein_coding chr11:125448950 chr11:125448940 nonsynonymous SNV 0.996 4 11 hm5C_associated_SNPs_25525 0 0 0 0 2 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_26164 DeepMRMD:1;iRNA_m5C:0.999536712157808 26165 chr2 233671287 233671287 1 + A G LIHC 233671297 + 233671277 233671317 41 GTGTGATGAAAGCTTCCAACCTCTTGGCGATATCATGAAAA GTGTGATGAAGGCTTCCAACCTCTTGGCGATATCATGAAAA < 41bp 1 0.245917372122099 1 0.300713717937469 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671297 chr2:233671287 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_25526 0 0 1 0 2 Nucleus 1 0.500231643922944 1 0.999536712154113 hm5C_site_26165 DeepMRMD:1;iRNA_m5C:0.999536712154113 26166 chr3 58097543 58097543 1 + T C LIHC 58097553 + 58097533 58097573 41 CCTTTCAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAA CCTTTCAGAGCCAAAGTTGACCCTTCCCACGATGCCAGCAA < 41bp 1 0.0613800876763178 1 0.0631116032600403 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097553 chr3:58097543 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_25527 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26166 DeepMRMD:1;iRNA_m5C:0.999536712157815 26167 chr3 58097543 58097543 1 + T C LIHC 58097554 + 58097534 58097574 41 CTTTCAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAA CTTTCAGAGCCAAAGTTGACCCTTCCCACGATGCCAGCAAA < 41bp 1 0.00815672292134913 1 0.137729078531265 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097554 chr3:58097543 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_25528 0 0 1 0 2 Cytosol 1 0.500231687195351 1 0.999536625609297 hm5C_site_26167 DeepMRMD:1;iRNA_m5C:0.999536625609297 26168 chr3 58097543 58097543 1 + T C LIHC 58097558 + 58097538 58097578 41 CAGAGTCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGA CAGAGCCAAAGTTGACCCTTCCCACGATGCCAGCAAAGTGA < 41bp 1 0.0305168220961975 1 0.198926031589508 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58097558 chr3:58097543 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_25529 0 0 1 0 2 Cytosol 1 0.500231624291855 1 0.99953675141629 hm5C_site_26168 DeepMRMD:1;iRNA_m5C:0.99953675141629 26169 chr8 104438328 104438328 1 + A G LIHC 104438308 + 104438288 104438328 41 GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCG < 41bp 1 0.434387378137525 1 0.71207070350647 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438308 chr8:104438328 synonymous SNV . 0 41 hm5C_associated_SNPs_25531 0 0 1 0 2 Nucleus 1 0.500231706292914 0.57585859298706 0.999536587414172 hm5C_site_26169 DeepMRMD:0.57585859298706;iRNA_m5C:0.999536587414172 26170 chr8 104438328 104438328 1 + A G LIHC 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCGGGCTATGGAGACGAGGAAGAGCC < 41bp 1 0.416259466610858 1 0.340858519077301 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438328 synonymous SNV . 0 18 hm5C_associated_SNPs_25532 0 0 1 0 2 Nucleus 1 0.500231647579559 1 0.999536704840882 hm5C_site_26170 DeepMRMD:1;iRNA_m5C:0.999536704840882 26171 chr12 1517374 1517374 1 + C T LIHC 1517370 + 1517350 1517390 41 CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAA CGAGGATGACCACTTCAAATCCTCTCATTCCAATCAAACAA < 41bp 1 0.0371360967308439 1 0.0997641980648041 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERC1 ENSG00000082805 CDS Human protein_coding chr12:1517370 chr12:1517374 synonymous SNV . 0 25 hm5C_associated_SNPs_25533 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_26171 DeepMRMD:1;iRNA_m5C:0.999536712157816 26172 chr12 52636851 52636851 1 + G T LIHC 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCTCCGGAATACCCTGAATGAGAT < 41bp 1 0.652853275596094 1 0.810622572898865 experiment 0.694293448807812 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636851 nonsynonymous SNV 0.249 3 32 hm5C_associated_SNPs_25534 0 0 0 0 2 Cytosol 1 0.500231662140039 0.37875485420227 0.999536675719922 hm5C_site_26172 DeepMRMD:0.37875485420227;iRNA_m5C:0.999536675719922 26173 chr12 52636851 52636851 1 + G T LIHC 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCTCCGGAATACCCTGAATGAGATT < 41bp 1 0.607643408773854 1 0.89053350687027 experiment 0.784713182452291 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636851 nonsynonymous SNV 0.249 3 31 hm5C_associated_SNPs_25535 0 0 0 0 2 Cytosol 1 0.500231643921093 0.21893298625946 0.999536712157815 hm5C_site_26173 DeepMRMD:0.21893298625946;iRNA_m5C:0.999536712157815 26174 chr12 100995485 100995485 1 + A G LIHC 100995493 + 100995473 100995513 41 GTCAACTGATTGATGTTCTTCAAAACATGGTGAAAACATGC GTCAACTGATTGGTGTTCTTCAAAACATGGTGAAAACATGC < 41bp 1 0.472044892114235 1 0.318189650774002 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:100995493 chr12:100995485 nonsynonymous SNV 0.972 0 13 hm5C_associated_SNPs_25536 0 0 1 0 2 Cytosol 1 0.500250943554773 1 0.999498112890455 hm5C_site_26174 DeepMRMD:1;iRNA_m5C:0.999498112890455 26175 chr14 64596894 64596894 1 + A G LIHC 64596874 + 64596854 64596894 41 TGTTGCAAGGCATGGTGGAACTGGTGAAGATTGGGAAGGAA TGTTGCAAGGCATGGTGGAACTGGTGAAGATTGGGAAGGAG < 41bp 1 0.2671431688523 1 0.240295857191086 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64596874 chr14:64596894 synonymous SNV . 0 41 hm5C_associated_SNPs_25537 0 0 1 0 1 Nucleus 1 0.500231643772739 1 0.999536712454521 hm5C_site_26175 DeepMRMD:1;iRNA_m5C:0.999536712454521 26176 chr15 90771576 90771576 1 + C T LIHC 90771587 + 90771567 90771607 41 TTGCTCTACCGGCACCGGAACAGCATGAAAGTCTTCCTGAA TTGCTCTACTGGCACCGGAACAGCATGAAAGTCTTCCTGAA < 41bp 1 0.634993260906355 1 0.673759818077087 experiment 0.73001347818729 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90771587 chr15:90771576 nonsynonymous SNV 0.996 3 10 hm5C_associated_SNPs_25538 0 0 1 0 0 chromatin 1 0.500231643921092 0.652480363845826 0.999536712157815 hm5C_site_26176 DeepMRMD:0.652480363845826;iRNA_m5C:0.999536712157815 26177 chr1 43917179 43917179 1 + T C LIHC 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT GGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT < 41bp 1 0.692410549916984 1 0.283607184886932 experiment 0.615178900166032 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917179 nonsynonymous SNV 0.985 4 1 hm5C_associated_SNPs_25540 0 0 0 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26177 DeepMRMD:1;iRNA_m5C:0.999536712157815 26178 chr6 144876004 144876004 1 + T C LIHC 144875991 + 144875971 144876011 41 TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA TCTATATTCTTCAGCAAGCCCGACGGGATCCACCCACCAAA < 41bp 1 0.231110542985648 1 0.320373117923737 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144875991 chr6:144876004 nonsynonymous SNV 0.945 1 34 hm5C_associated_SNPs_25541 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26178 DeepMRMD:1;iRNA_m5C:0.999536712157815 26179 chr7 100204221 100204221 1 + C T LIHC 100204239 + 100204219 100204259 41 TCCGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT TCTGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT < 41bp 1 0.397313670673595 1 0.227355778217316 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204239 chr7:100204221 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_25542 0 0 0 0 1 Endoplasmic reticulum 1 0.500234471559371 1 0.999531056881259 hm5C_site_26179 DeepMRMD:1;iRNA_m5C:0.999531056881259 26180 chr11 73638346 73638346 1 + A G LIHC 73638335 + 73638315 73638355 41 ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCTA ATTCTTGTGTTTTAGGTAGCCACATGGGAGAGGCAGATCTA < 41bp 1 0.634320567872387 1 0.857091784477234 experiment 0.731358864255226 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73638335 chr11:73638346 nonsynonymous SNV 0.999 2 32 hm5C_associated_SNPs_25543 0 0 1 0 1 Ribosome 1 0.500231643921093 0.285816431045532 0.999536712157815 hm5C_site_26180 DeepMRMD:0.285816431045532;iRNA_m5C:0.999536712157815 26181 chr11 124496923 124496923 1 + A G LIHC 124496905 + 124496885 124496925 41 AGTGCCCAGACCAGAAGTGTCTATATACCTGTCAGATCAAG AGTGCCCAGACCAGAAGTGTCTATATACCTGTCAGATCGAG < 41bp 1 0.611134023400643 1 0.265113681554794 experiment 0.777731953198714 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124496905 chr11:124496923 nonsynonymous SNV 0.974 1 39 hm5C_associated_SNPs_25544 0 0 1 0 1 Ribosome 1 0.500231643968645 1 0.999536712062709 hm5C_site_26181 DeepMRMD:1;iRNA_m5C:0.999536712062709 26182 chr12 100995491 100995491 1 + T C LIHC 100995493 + 100995473 100995513 41 GTCAACTGATTGATGTTCTTCAAAACATGGTGAAAACATGC GTCAACTGATTGATGTTCCTCAAAACATGGTGAAAACATGC < 41bp 1 0.434711183635513 1 0.465515077114105 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:100995493 chr12:100995491 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_25545 0 0 1 0 2 Cytosol 1 0.500251937860168 1 0.999496124279664 hm5C_site_26182 DeepMRMD:1;iRNA_m5C:0.999496124279664 26183 chr13 115091193 115091193 1 + A G LIHC 115091186 + 115091166 115091206 41 AAGAAGCTCAAGAAAGACAACCAAGAGAGCTCAGACGCTGA AAGAAGCTCAAGAAAGACAACCAAGAGGGCTCAGACGCTGA < 41bp 1 0.148212577897632 1 0.387311100959778 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115091186 chr13:115091193 nonsynonymous SNV 0.999 0 28 hm5C_associated_SNPs_25546 0 0 0 0 0 nucleus 1 0.50022996042129 1 0.99954007915742 hm5C_site_26183 DeepMRMD:1;iRNA_m5C:0.99954007915742 26184 chr1 55457692 55457692 1 + T C LIHC 55457683 + 55457663 55457703 41 CCACCCAGCTATGAGAGCATCAGCCTTGCTCTTGATGCCGT CCACCCAGCTATGAGAGCATCAGCCTTGCCCTTGATGCCGT < 41bp 1 0.62259129171793 1 0.323311030864716 experiment 0.75481741656414 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55457683 chr1:55457692 synonymous SNV . 0 30 hm5C_associated_SNPs_25548 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26184 DeepMRMD:1;iRNA_m5C:0.999536712157815 26185 chr1 229783443 229783443 1 + A G LIHC 229783428 + 229783408 229783448 41 TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTC TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAGGCGTC < 41bp 1 0.300075686737741 1 0.179400891065598 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control URB2 ENSG00000135763 CDS Human protein_coding chr1:229783428 chr1:229783443 nonsynonymous SNV 0.003 1 36 hm5C_associated_SNPs_25549 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26185 DeepMRMD:1;iRNA_m5C:0.999536712157815 26186 chr3 52325053 52325053 1 + T C LIHC 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCCGCGGG < 41bp 1 0.621188020627033 1 0.759957551956177 experiment 0.757623958745933 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325053 nonsynonymous SNV 0.008 3 36 hm5C_associated_SNPs_25550 0 0 1 0 2 chromatin 1 0.500231644136287 0.480084896087646 0.999536711727425 hm5C_site_26186 DeepMRMD:0.480084896087646;iRNA_m5C:0.999536711727425 26187 chr14 59970624 59970624 1 + A G LIHC 59970605 + 59970585 59970625 41 TTCTGGTCAGAAAGAAAAGACTTATTGTTCTCTTCAGCCAC TTCTGGTCAGAAAGAAAAGACTTATTGTTCTCTTCAGCCGC < 41bp 1 0.190683008038393 1 0.0456917881965637 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control JKAMP ENSG00000050130 CDS Human protein_coding chr14:59970605 chr14:59970624 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_25551 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_26187 DeepMRMD:1;iRNA_m5C:0.999536712157815 26188 chr19 48259062 48259062 1 + T C LIHC 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAGCTCGGAGCTGACAGACCCGCTCAGGACCCTGAAGGTGC < 41bp 1 0.195357925761303 1 0.032894104719162 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259062 nonsynonymous SNV 0.335 4 20 hm5C_associated_SNPs_25552 0 0 1 0 2 unknown 1 0.500231644501238 1 0.999536710997524 hm5C_site_26188 DeepMRMD:1;iRNA_m5C:0.999536710997524 26189 chr2 192160940 192160940 1 + T G LIHC 192160923 + 192160903 192160943 41 AAAGTGGAAGAATACAGGAACAGAAATTTTTATGAACTGAG AAAGTGGAAGAATACAGGAACAGAAATTTTTATGAACGGAG < 41bp 1 0.359335326048238 1 0.558125734329224 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192160923 chr2:192160940 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_25553 0 0 1 0 1 Nucleus 1 0.500231612967445 0.883748531341552 0.99953677406511 hm5C_site_26189 DeepMRMD:0.883748531341552;iRNA_m5C:0.99953677406511 26190 chr6 74493528 74493528 1 + T C LIHC 74493537 + 74493517 74493557 41 GGGTCTTGGACTAACAACTACTCCAGTGGAGGTATTGTATT GGGTCTTGGACCAACAACTACTCCAGTGGAGGTATTGTATT < 41bp 1 0.682518639187732 1 0.931756734848022 experiment 0.634962721624535 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout CD109 ENSG00000156535 CDS Human protein_coding chr6:74493537 chr6:74493528 nonsynonymous SNV 0.880 3 12 hm5C_associated_SNPs_25555 0 0 1 0 2 Ribosome 1 0.500231643089279 0.136486530303956 0.999536713821443 hm5C_site_26190 DeepMRMD:0.136486530303956;iRNA_m5C:0.999536713821443 26191 chr1 207510136 207510136 1 + A C LIHC 207510119 + 207510099 207510139 41 AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCACAA AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCCCAA < 41bp 1 0.334968578578205 1 0.807099044322968 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207510119 chr1:207510136 nonsynonymous SNV 0.001 3 38 hm5C_associated_SNPs_25556 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.385801911354064 0.999536712157815 hm5C_site_26191 DeepMRMD:0.385801911354064;iRNA_m5C:0.999536712157815 26192 chr2 27277583 27277583 1 + T C LIHC 27277595 + 27277575 27277615 41 TCACTTCCTGCCATGGGCTTCGAGAAGATCGAGAGCCCCGT TCACTTCCCGCCATGGGCTTCGAGAAGATCGAGAGCCCCGT < 41bp 1 0.661231717718438 1 0.867565810680389 experiment 0.677536564563125 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27277595 chr2:27277583 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_25557 0 0 1 0 1 Cytosol 1 0.500231643925899 0.264868378639222 0.999536712148202 hm5C_site_26192 DeepMRMD:0.264868378639222;iRNA_m5C:0.999536712148202 26193 chr22 39078921 39078921 1 + T C LIHC 39078940 + 39078920 39078960 41 CTTTATGATCCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA CCTTATGATCCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA < 41bp 1 0.287121082855482 1 0.0982420742511749 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078940 chr22:39078921 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_25558 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26193 DeepMRMD:1;iRNA_m5C:0.999536712157815 26194 chr5 139909162 139909162 1 + A T LIHC 139909148 + 139909128 139909168 41 TTTGCCACCTACATTTGGCCCAGCCACACTTTTCAATCACT TTTGCCACCTACATTTGGCCCAGCCACACTTTTCTATCACT < 41bp 1 0.0792507608942579 1 0.0913022756576538 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139909148 chr5:139909162 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_25559 0 0 1 0 0 unknown 1 0.500231642986009 1 0.999536714027981 hm5C_site_26194 DeepMRMD:1;iRNA_m5C:0.999536714027981 26195 chrX 70674056 70674056 1 + T C LIHC 70674049 + 70674029 70674069 41 GTCAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGT GTCAGTATACTAAGACTGCCCAGGAGACTGTGAACGTCTGT < 41bp 1 0.603535036977632 1 0.803241491317749 experiment 0.792929926044736 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF1 ENSG00000147133 CDS Human protein_coding chrX:70674049 chrX:70674056 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_25560 0 0 1 1 2 Cytosol 1 0.500250385539039 0.393517017364502 0.999499228921923 hm5C_site_26195 DeepMRMD:0.393517017364502;iRNA_m5C:0.999499228921923 26196 chr19 579633 579633 1 + G A LIHC 579629 + 579609 579649 41 CGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG CGTGGTGCTGAAGGAGGACGCGCTACCCGGCCAGAAAACGG < 41bp 1 0.57711063878973 1 0.448272854089737 experiment 0.84577872242054 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579629 chr19:579633 synonymous SNV . 0 25 hm5C_associated_SNPs_25562 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26196 DeepMRMD:1;iRNA_m5C:0.999536712157815 26197 chr19 579633 579633 1 + G A LIHC 579636 + 579616 579656 41 CTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAA CTGAAGGAGGACGCGCTACCCGGCCAGAAAACGGAGTTCAA < 41bp 1 0.611111491477416 1 0.857751727104187 experiment 0.777777017045168 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579636 chr19:579633 synonymous SNV . 0 18 hm5C_associated_SNPs_25563 0 0 1 0 1 Ribosome 1 0.500231643921092 0.284496545791626 0.999536712157815 hm5C_site_26197 DeepMRMD:0.284496545791626;iRNA_m5C:0.999536712157815 26198 chr11 13750208 13750208 1 + T C LIHC 13750192 + 13750172 13750212 41 CGTTATGGTTTTAATACTATCCTTGTGATCCTCATCTGGCG CGTTATGGTTTTAATACTATCCTTGTGATCCTCATCCGGCG < 41bp 1 0.132808746720881 1 0.0296982526779175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAR1 ENSG00000197601 CDS Human protein_coding chr11:13750192 chr11:13750208 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_25565 0 0 1 0 1 Nucleus 1 0.500231643921124 1 0.999536712157752 hm5C_site_26198 DeepMRMD:1;iRNA_m5C:0.999536712157752 26199 chr2 27302028 27302028 1 + A G LIHC 27302048 + 27302028 27302068 41 ACACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAG GCACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAG < 41bp 1 0.563945677679229 1 0.254448443651199 experiment 0.872108644641542 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302048 chr2:27302028 nonsynonymous SNV 0.888 3 1 hm5C_associated_SNPs_25566 0 0 0 0 1 Cytosol 1 0.500231643921091 1 0.999536712157817 hm5C_site_26199 DeepMRMD:1;iRNA_m5C:0.999536712157817 26200 chr2 160087091 160087091 1 + C A LIHC 160087089 + 160087069 160087109 41 GCGGTACAGCTGAGCACAGACCCCGCAACACGCCGTTCATG GCGGTACAGCTGAGCACAGACCACGCAACACGCCGTTCATG < 41bp 1 0.192637453526295 1 0.285586148500443 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160087089 chr2:160087091 synonymous SNV . 0 23 hm5C_associated_SNPs_25567 0 0 0 0 0 Nucleus 1 0.500235404516814 1 0.999529190966372 hm5C_site_26200 DeepMRMD:1;iRNA_m5C:0.999529190966372 26201 chr5 72201205 72201205 1 + A G LIHC 72201196 + 72201176 72201216 41 GTTTCTCTGACCAGTTTCCTCTTCCCTTAAAAGAGCGTCTT GTTTCTCTGACCAGTTTCCTCTTCCCTTAGAAGAGCGTCTT < 41bp 1 0.202423791568909 1 0.314120441675186 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72201196 chr5:72201205 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_25568 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26201 DeepMRMD:1;iRNA_m5C:0.999536712157815 26202 chr7 44096470 44096470 1 + C A LIHC 44096481 + 44096461 44096501 41 GAGAGTGGCCGCTTCCAGGACGTGGGACCCCAGGCCCCAGT GAGAGTGGCAGCTTCCAGGACGTGGGACCCCAGGCCCCAGT < 41bp 1 0.687636380217094 1 0.548544585704803 experiment 0.624727239565811 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44096481 chr7:44096470 nonsynonymous SNV 0.525 0 10 hm5C_associated_SNPs_25569 0 0 1 0 1 Ribosome 1 0.500231643921093 0.902910828590394 0.999536712157814 hm5C_site_26202 DeepMRMD:0.902910828590394;iRNA_m5C:0.999536712157814 26203 chr10 75525661 75525661 1 + A T LIHC 75525655 + 75525635 75525675 41 GGCTCTTATGAATTCTTGGCCACTGTAGATTACTGCAAGGT GGCTCTTATGAATTCTTGGCCACTGTTGATTACTGCAAGGT < 41bp 1 0.264916997345929 1 0.0857260525226593 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75525655 chr10:75525661 synonymous SNV . 0 27 hm5C_associated_SNPs_25570 0 0 1 0 1 Nucleus 1 0.500228055691116 1 0.999543888617768 hm5C_site_26203 DeepMRMD:1;iRNA_m5C:0.999543888617768 26204 chr16 83998905 83998905 1 + G A LIHC 83998898 + 83998878 83998918 41 CCCTTCTCGCTGTGGGCCCGCAACGTGGTCCTCGCCACAGG CCCTTCTCGCTGTGGGCCCGCAACGTGATCCTCGCCACAGG < 41bp 1 0.587493282738926 1 0.197790503501892 experiment 0.825013434522149 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83998898 chr16:83998905 nonsynonymous SNV 0.997 3 28 hm5C_associated_SNPs_25571 0 0 0 0 0 chromatin 1 0.500231643934546 1 0.999536712130908 hm5C_site_26204 DeepMRMD:1;iRNA_m5C:0.999536712130908 26205 chr17 49239133 49239133 1 + A T LIHC 49239124 + 49239104 49239144 41 CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGCTTGT CAGTGATTCTGTGGAGAGTGCAGAGAAGGTGATCGGCTTGT < 41bp 1 0.418884657261603 1 0.364423453807831 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239124 chr17:49239133 nonsynonymous SNV 0.996 3 30 hm5C_associated_SNPs_25572 0 0 1 0 1 Ribosome 1 0.500231643355184 1 0.999536713289633 hm5C_site_26205 DeepMRMD:1;iRNA_m5C:0.999536713289633 26206 chr19 2810300 2810300 1 + A T LIHC 2810285 + 2810265 2810305 41 GACCTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCGG GACCTGGGCACTCTGAGGCTCTGCCCCATCCCTGCTGGCGG < 41bp 1 0.217307988718181 1 0.545696973800659 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control THOP1 ENSG00000172009 splicing Human protein_coding chr19:2810285 chr19:2810300 . 0.696 0 36 hm5C_associated_SNPs_25573 0 0 1 0 0 Ribosome 1 0.500231641805657 0.908606052398682 0.999536716388686 hm5C_site_26206 DeepMRMD:0.908606052398682;iRNA_m5C:0.999536716388686 26207 chr19 2810300 2810300 1 + A T LIHC 2810288 + 2810268 2810308 41 CTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCGGAGT CTGGGCACTCTGAGGCTCTGCCCCATCCCTGCTGGCGGAGT < 41bp 1 0.235190437176465 1 0.151009202003479 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THOP1 ENSG00000172009 splicing Human protein_coding chr19:2810288 chr19:2810300 . 0.696 0 33 hm5C_associated_SNPs_25574 0 0 1 0 0 Ribosome 1 0.50022667269323 1 0.999546654613539 hm5C_site_26207 DeepMRMD:1;iRNA_m5C:0.999546654613539 26208 chr19 59057222 59057222 1 + A G LIHC 59057205 + 59057185 59057225 41 TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCAGCG TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCGGCG < 41bp 1 0.428647883858852 1 0.158044159412384 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057205 chr19:59057222 nonsynonymous SNV 0.995 3 38 hm5C_associated_SNPs_25575 0 0 1 0 2 Cytosol 1 0.50023164392077 1 0.999536712158461 hm5C_site_26208 DeepMRMD:1;iRNA_m5C:0.999536712158461 26209 chr5 82406962 82406962 1 + G C LIHC 82406946 + 82406926 82406966 41 ATTGTTGTCAGGAGCAGGACCAGCTGATGTATACACGTTTA ATTGTTGTCAGGAGCAGGACCAGCTGATGTATACACCTTTA < 41bp 1 0.613078818756614 1 0.328665554523468 experiment 0.773842362486772 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82406946 chr5:82406962 synonymous SNV . 0 37 hm5C_associated_SNPs_25576 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26209 DeepMRMD:1;iRNA_m5C:0.999536712157815 26210 chr7 4825905 4825905 1 + A T LIHC 4825887 + 4825867 4825907 41 CCCTGGTCTTGCAGGGGAAGCGGCTGCAGTGGACTCGGAAG CCCTGGTCTTGCAGGGGAAGCGGCTGCAGTGGACTCGGTAG < 41bp 1 0.462219061179679 1 0.617867887020111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4825887 chr7:4825905 nonsynonymous SNV 0.469 2 39 hm5C_associated_SNPs_25577 0 0 1 0 1 chromatin 1 0.500231643921092 0.764264225959778 0.999536712157815 hm5C_site_26210 DeepMRMD:0.764264225959778;iRNA_m5C:0.999536712157815 26211 chr12 79689884 79689884 1 + C T LIHC 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG TGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG < 41bp 1 0.19808066207731 1 0.214873969554901 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689884 synonymous SNV . 0 1 hm5C_associated_SNPs_25578 0 0 0 0 1 Cytosol 1 0.500231643921111 1 0.999536712157777 hm5C_site_26211 DeepMRMD:1;iRNA_m5C:0.999536712157777 26212 chr2 27456323 27456323 1 + T G LIHC 27456304 + 27456284 27456324 41 CCGGGTGCTGGGCACCTCCCCTGAAGCCATTGACTCGGCTG CCGGGTGCTGGGCACCTCCCCTGAAGCCATTGACTCGGCGG < 41bp 1 0.65887989972688 1 0.368626415729523 experiment 0.68224020054624 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27456304 chr2:27456323 synonymous SNV . 0 40 hm5C_associated_SNPs_25579 0 0 1 0 1 Exosome 1 0.500231643921187 1 0.999536712157626 hm5C_site_26212 DeepMRMD:1;iRNA_m5C:0.999536712157626 26213 chr19 13869871 13869871 1 + G A LIHC 13869855 + 13869835 13869875 41 CCCACTTACCTGCCTGGGGGCCCTGGCCCTGAGTCTGCGCT CCCACTTACCTGCCTGGGGGCCCTGGCCCTGAGTCTACGCT < 41bp 1 0.0561715159357457 1 0.0320457816123962 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869855 chr19:13869871 synonymous SNV . 0 37 hm5C_associated_SNPs_25580 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_26213 DeepMRMD:1;iRNA_m5C:0.999536712157816 26214 chr19 13869871 13869871 1 + G A LIHC 13869856 + 13869836 13869876 41 CCACTTACCTGCCTGGGGGCCCTGGCCCTGAGTCTGCGCTG CCACTTACCTGCCTGGGGGCCCTGGCCCTGAGTCTACGCTG < 41bp 1 0.172922664993247 1 0.0549625158309937 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869856 chr19:13869871 synonymous SNV . 0 36 hm5C_associated_SNPs_25581 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26214 DeepMRMD:1;iRNA_m5C:0.999536712157815 26215 chr19 13869871 13869871 1 + G A LIHC 13869857 + 13869837 13869877 41 CACTTACCTGCCTGGGGGCCCTGGCCCTGAGTCTGCGCTGG CACTTACCTGCCTGGGGGCCCTGGCCCTGAGTCTACGCTGG < 41bp 1 0.413791981184961 1 0.104442358016968 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869857 chr19:13869871 synonymous SNV . 0 35 hm5C_associated_SNPs_25582 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26215 DeepMRMD:1;iRNA_m5C:0.999536712157815 26216 chr19 13869871 13869871 1 + G A LIHC 13869880 + 13869860 13869900 41 GCCCTGAGTCTGCGCTGGGGCCCCCAAAGCCCAGCCGAGCT GCCCTGAGTCTACGCTGGGGCCCCCAAAGCCCAGCCGAGCT < 41bp 1 0.0886810717884015 1 0.0582053959369659 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869880 chr19:13869871 synonymous SNV . 0 12 hm5C_associated_SNPs_25583 0 0 1 0 0 Cytosol 1 0.500241795791502 1 0.999516408416996 hm5C_site_26216 DeepMRMD:1;iRNA_m5C:0.999516408416996 26217 chr19 13869871 13869871 1 + G A LIHC 13869881 + 13869861 13869901 41 CCCTGAGTCTGCGCTGGGGCCCCCAAAGCCCAGCCGAGCTC CCCTGAGTCTACGCTGGGGCCCCCAAAGCCCAGCCGAGCTC < 41bp 1 0.416308988200845 1 0.145917505025864 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869881 chr19:13869871 synonymous SNV . 0 11 hm5C_associated_SNPs_25584 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26217 DeepMRMD:1;iRNA_m5C:0.999536712157815 26218 chr19 13869871 13869871 1 + G A LIHC 13869882 + 13869862 13869902 41 CCTGAGTCTGCGCTGGGGCCCCCAAAGCCCAGCCGAGCTCT CCTGAGTCTACGCTGGGGCCCCCAAAGCCCAGCCGAGCTCT < 41bp 1 0.262370417188807 1 0.25417548418045 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869882 chr19:13869871 synonymous SNV . 0 10 hm5C_associated_SNPs_25585 0 0 1 0 0 Cytosol 1 0.500233556013531 1 0.999532887972937 hm5C_site_26218 DeepMRMD:1;iRNA_m5C:0.999532887972937 26219 chr19 13869871 13869871 1 + G A LIHC 13869883 + 13869863 13869903 41 CTGAGTCTGCGCTGGGGCCCCCAAAGCCCAGCCGAGCTCTG CTGAGTCTACGCTGGGGCCCCCAAAGCCCAGCCGAGCTCTG < 41bp 1 0.246909866614505 1 0.375588208436966 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869883 chr19:13869871 synonymous SNV . 0 9 hm5C_associated_SNPs_25586 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_26219 DeepMRMD:1;iRNA_m5C:0.999536712157815 26220 chr19 13869871 13869871 1 + G A LIHC 13869884 + 13869864 13869904 41 TGAGTCTGCGCTGGGGCCCCCAAAGCCCAGCCGAGCTCTGA TGAGTCTACGCTGGGGCCCCCAAAGCCCAGCCGAGCTCTGA < 41bp 1 0.229954374866102 1 0.727136731147766 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869884 chr19:13869871 synonymous SNV . 0 8 hm5C_associated_SNPs_25587 0 0 1 0 0 Cytosol 1 0.500231643921093 0.545726537704468 0.999536712157814 hm5C_site_26220 DeepMRMD:0.545726537704468;iRNA_m5C:0.999536712157814 26221 chr2 27455440 27455440 1 + A G LIHC 27455445 + 27455425 27455465 41 CTAACGTATTGGGGCACCACCCATGACCTCACCTTTCGAAC CTAACGTATTGGGGCGCCACCCATGACCTCACCTTTCGAAC < 41bp 1 0.0629445409970103 1 0.116858631372452 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27455445 chr2:27455440 nonsynonymous SNV 0.785 2 16 hm5C_associated_SNPs_25588 0 0 1 0 0 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26221 DeepMRMD:1;iRNA_m5C:0.999536712157815 26222 chr17 29554603 29554603 1 + A C LIHC 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAC < 41bp 1 0.13234148994506 1 0.101155281066895 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554603 nonsynonymous SNV 0.999 3 41 hm5C_associated_SNPs_25589 0 0 1 0 2 Nucleus 1 0.50023164392109 1 0.999536712157821 hm5C_site_26222 DeepMRMD:1;iRNA_m5C:0.999536712157821 26223 chr16 84884214 84884214 1 + A G LIHC 84884208 + 84884188 84884228 41 CACCAACAAGATCGGTTGTGCTGTGAACACCTGCCGGAAGA CACCAACAAGATCGGTTGTGCTGTGAGCACCTGCCGGAAGA < 41bp 1 0.27718145334324 1 0.0824877321720123 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84884208 chr16:84884214 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_25590 0 0 0 0 2 Nucleus 1 0.500231653134985 1 0.99953669373003 hm5C_site_26223 DeepMRMD:1;iRNA_m5C:0.99953669373003 26224 chr19 11553327 11553327 1 + G A LIHC 11553314 + 11553294 11553334 41 AGAGAGGCCAAAGAGCAGCACCAGAAGCTGTGGGAAGGTAT AGAGAGGCCAAAGAGCAGCACCAGAAGCTGTGGAAAGGTAT < 41bp 1 0.30088728247933 1 0.148816645145416 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553314 chr19:11553327 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_25591 0 0 1 0 1 Nucleus 1 0.500231651446265 1 0.999536697107469 hm5C_site_26224 DeepMRMD:1;iRNA_m5C:0.999536697107469 26225 chr19 34895344 34895344 1 + C G LIHC 34895331 + 34895311 34895351 41 GTTTTCACCTGGTCGCCCGGCGGCCATGGCGGCCGTTCTGA GTTTTCACCTGGTCGCCCGGCGGCCATGGCGGCGGTTCTGA < 41bp 1 0.611100063568782 1 0.507500946521759 experiment 0.777799872862435 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD2L ENSG00000126249 CDS Human protein_coding chr19:34895331 chr19:34895344 synonymous SNV . 0 34 hm5C_associated_SNPs_25592 0 0 1 0 1 Ribosome 1 0.500231643921093 0.984998106956482 0.999536712157814 hm5C_site_26225 DeepMRMD:0.984998106956482;iRNA_m5C:0.999536712157814 26226 chr1 46033677 46033677 1 + A G LIHC 46033668 + 46033648 46033688 41 ACTCAGGCGGGGAGACAACCCCTTCCCCAAGAATGCTGATG ACTCAGGCGGGGAGACAACCCCTTCCCCAGGAATGCTGATG < 41bp 1 0.0457259201472768 1 0.284460932016373 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46033668 chr1:46033677 nonsynonymous SNV 0.987 1 30 hm5C_associated_SNPs_25593 0 0 1 0 1 Ribosome 1 0.500231643921226 1 0.999536712157549 hm5C_site_26226 DeepMRMD:1;iRNA_m5C:0.999536712157549 26227 chr2 153496548 153496548 1 + T A LIHC 153496565 + 153496545 153496585 41 CTCTGATGGAGCAGCAGGATCCAAAGGTAAGAAGTGCCGCA CTCAGATGGAGCAGCAGGATCCAAAGGTAAGAAGTGCCGCA < 41bp 1 0.375510759402877 1 0.443842768669128 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153496565 chr2:153496548 nonsynonymous SNV 0.998 0 4 hm5C_associated_SNPs_25594 0 0 1 0 2 Ribosome 1 0.500231643987349 1 0.999536712025302 hm5C_site_26227 DeepMRMD:1;iRNA_m5C:0.999536712025302 26228 chr2 232576616 232576616 1 + A G LIHC 232576625 + 232576605 232576645 41 GGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAG GGAAAATGGGGGGCAGGAGGCTGACAATGAGGTAGACGAAG < 41bp 1 0.390180423319205 1 0.186501353979111 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232576625 chr2:232576616 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_25596 0 0 1 0 3 Ribosome 1 0.50023164391999 1 0.999536712160019 hm5C_site_26228 DeepMRMD:1;iRNA_m5C:0.999536712160019 26229 chr7 90355912 90355912 1 + G T LIHC 90355900 + 90355880 90355920 41 GATATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAA GATATGTGTCACAAAGATGTCTACACGGAACTTCCAGGGAA < 41bp 1 0.583280024069713 1 0.111333012580872 experiment 0.833439951860574 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355900 chr7:90355912 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_25598 0 0 1 0 1 Nucleus 1 0.500231644020732 1 0.999536711958535 hm5C_site_26229 DeepMRMD:1;iRNA_m5C:0.999536711958535 26230 chr7 90355912 90355912 1 + G T LIHC 90355903 + 90355883 90355923 41 ATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAATGG ATGTGTCACAAAGATGTCTACACGGAACTTCCAGGGAATGG < 41bp 1 0.357516538751933 1 0.0752006471157074 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355903 chr7:90355912 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_25599 0 0 1 0 1 Nucleus 1 0.500231643921456 1 0.999536712157088 hm5C_site_26230 DeepMRMD:1;iRNA_m5C:0.999536712157088 26231 chr7 90355912 90355912 1 + G T LIHC 90355905 + 90355885 90355925 41 GTGTCACAAAGATGTCTACACGGAACTGCCAGGGAATGGAC GTGTCACAAAGATGTCTACACGGAACTTCCAGGGAATGGAC < 41bp 1 0.467541020276291 1 0.353830397129059 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355905 chr7:90355912 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_25600 0 0 1 0 1 Nucleus 1 0.500231643548336 1 0.999536712903328 hm5C_site_26231 DeepMRMD:1;iRNA_m5C:0.999536712903328 26232 chr9 72659509 72659509 1 + T C LIHC 72659501 + 72659481 72659521 41 ACTCGCTTTGTGCCCGCAGCCCTGCAGCTCGCCGGTGCCCT ACTCGCTTTGTGCCCGCAGCCCTGCAGCCCGCCGGTGCCCT < 41bp 1 0.241496047462904 1 0.752311944961548 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659501 chr9:72659509 nonsynonymous SNV 0.121 1 29 hm5C_associated_SNPs_25601 0 0 0 0 1 nucleus 1 0.500231643921094 0.495376110076904 0.999536712157812 hm5C_site_26232 DeepMRMD:0.495376110076904;iRNA_m5C:0.999536712157812 26233 chr9 72659509 72659509 1 + T C LIHC 72659505 + 72659485 72659525 41 GCTTTGTGCCCGCAGCCCTGCAGCTCGCCGGTGCCCTCGAC GCTTTGTGCCCGCAGCCCTGCAGCCCGCCGGTGCCCTCGAC < 41bp 1 0.510219802556661 1 0.389741063117981 experiment 0.979560394886678 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659505 chr9:72659509 nonsynonymous SNV 0.121 1 25 hm5C_associated_SNPs_25602 0 0 0 0 1 nucleus 1 0.500231646351728 1 0.999536707296544 hm5C_site_26233 DeepMRMD:1;iRNA_m5C:0.999536707296544 26234 chr9 72659509 72659509 1 + T C LIHC 72659508 + 72659488 72659528 41 TTGTGCCCGCAGCCCTGCAGCTCGCCGGTGCCCTCGACCTG TTGTGCCCGCAGCCCTGCAGCCCGCCGGTGCCCTCGACCTG < 41bp 1 0.537462622884673 1 0.0701201260089874 experiment 0.925074754230655 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659508 chr9:72659509 nonsynonymous SNV 0.121 1 22 hm5C_associated_SNPs_25603 0 0 0 0 1 nucleus 1 0.500231643913532 1 0.999536712172936 hm5C_site_26234 DeepMRMD:1;iRNA_m5C:0.999536712172936 26235 chr9 72659509 72659509 1 + T C LIHC 72659513 + 72659493 72659533 41 CCCGCAGCCCTGCAGCTCGCCGGTGCCCTCGACCTGCCCGC CCCGCAGCCCTGCAGCCCGCCGGTGCCCTCGACCTGCCCGC < 41bp 1 0.53555589261171 1 0.852473258972168 experiment 0.92888821477658 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659513 chr9:72659509 nonsynonymous SNV 0.121 1 17 hm5C_associated_SNPs_25604 0 0 0 0 1 nucleus 1 0.500231644191239 0.295053482055664 0.999536711617523 hm5C_site_26235 DeepMRMD:0.295053482055664;iRNA_m5C:0.999536711617523 26236 chr9 72659509 72659509 1 + T C LIHC 72659519 + 72659499 72659539 41 GCCCTGCAGCTCGCCGGTGCCCTCGACCTGCCCGCTGGGTC GCCCTGCAGCCCGCCGGTGCCCTCGACCTGCCCGCTGGGTC < 41bp 1 0.434541100955389 1 0.156776428222656 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659519 chr9:72659509 nonsynonymous SNV 0.121 1 11 hm5C_associated_SNPs_25605 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26236 DeepMRMD:1;iRNA_m5C:0.999536712157815 26237 chr9 72659509 72659509 1 + T C LIHC 72659529 + 72659509 72659549 41 TCGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTT CCGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTT < 41bp 1 0.382594533875501 1 0.280925750732422 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659529 chr9:72659509 nonsynonymous SNV 0.121 1 1 hm5C_associated_SNPs_25607 0 0 0 0 1 nucleus 1 0.500231643910506 1 0.999536712178989 hm5C_site_26237 DeepMRMD:1;iRNA_m5C:0.999536712178989 26238 chr12 57599015 57599015 1 + A G LIHC 57599013 + 57598993 57599033 41 GACTGCGGGGACGGCTCTGACGAGGAGGACTGCAGCATCGG GACTGCGGGGACGGCTCTGACGGGGAGGACTGCAGCATCGG < 41bp 1 0.620747715613747 1 0.957612454891205 experiment 0.758504568772506 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599013 chr12:57599015 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_25608 0 0 1 0 1 Exosome 1 0.500231643895993 0.0847750902175901 0.999536712208015 hm5C_site_26238 DeepMRMD:0.0847750902175901;iRNA_m5C:0.999536712208015 26239 chr14 103805201 103805201 1 + A G LIHC 103805206 + 103805186 103805226 41 AGAACAATTGAGGAGAGGGTCAATATCCTCTTTGATTTTGT AGAACAATTGAGGAGGGGGTCAATATCCTCTTTGATTTTGT < 41bp 1 0.244893254157619 1 0.354290693998337 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805206 chr14:103805201 nonsynonymous SNV 0.744 3 16 hm5C_associated_SNPs_25609 0 0 1 0 1 Cytosol 1 0.500231643920971 1 0.999536712158059 hm5C_site_26239 DeepMRMD:1;iRNA_m5C:0.999536712158059 26240 chr14 103805201 103805201 1 + A G LIHC 103805213 + 103805193 103805233 41 TTGAGGAGAGGGTCAATATCCTCTTTGATTTTGTTAAGGTA TTGAGGAGGGGGTCAATATCCTCTTTGATTTTGTTAAGGTA < 41bp 1 0.308993100449506 1 0.492608666419983 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805213 chr14:103805201 nonsynonymous SNV 0.744 3 9 hm5C_associated_SNPs_25610 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26240 DeepMRMD:1;iRNA_m5C:0.999536712157815 26241 chr5 132427026 132427026 1 + A G LIHC 132427041 + 132427021 132427061 41 AAATGAGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG AAATGGGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG < 41bp 1 0.312521637723719 1 0.474324613809586 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427041 chr5:132427026 nonsynonymous SNV 0.986 1 6 hm5C_associated_SNPs_25611 0 0 1 0 1 Cytosol 1 0.500231644354109 1 0.999536711291781 hm5C_site_26241 DeepMRMD:1;iRNA_m5C:0.999536711291781 26242 chr12 104325389 104325389 1 + A G LIHC 104325380 + 104325360 104325400 41 AAGTAGAGAAGGATCAAGGACGGATGATGAAGTAGTACAGA AAGTAGAGAAGGATCAAGGACGGATGATGGAGTAGTACAGA < 41bp 1 0.448445646332087 1 0.453766793012619 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104325380 chr12:104325389 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_25613 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_26242 DeepMRMD:1;iRNA_m5C:0.999536712157814 26243 chr19 11213382 11213382 1 + G T LIHC 11213368 + 11213348 11213388 41 ACCTGCAAATCCGGGGACTTCAGCTGTGGGGGCCGTGTCAA ACCTGCAAATCCGGGGACTTCAGCTGTGGGGGCCTTGTCAA < 41bp 1 0.645470318460755 1 0.651132822036743 experiment 0.709059363078489 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11213368 chr19:11213382 nonsynonymous SNV 0.997 3 35 hm5C_associated_SNPs_25615 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.697734355926514 0.999536712157815 hm5C_site_26243 DeepMRMD:0.697734355926514;iRNA_m5C:0.999536712157815 26244 chr19 49422315 49422315 1 + A G LIHC 49422304 + 49422284 49422324 41 CAGCTGGAGAAAGTGTACGACCCAAAGAATGAGGAGGACGA CAGCTGGAGAAAGTGTACGACCCAAAGAATGGGGAGGACGA < 41bp 1 0.240005753703801 1 0.192454725503922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422304 chr19:49422315 nonsynonymous SNV 0.996 3 32 hm5C_associated_SNPs_25616 0 0 1 0 2 Ribosome 1 0.500231245741568 1 0.999537508516864 hm5C_site_26244 DeepMRMD:1;iRNA_m5C:0.999537508516864 26245 chr19 49422315 49422315 1 + A G LIHC 49422305 + 49422285 49422325 41 AGCTGGAGAAAGTGTACGACCCAAAGAATGAGGAGGACGAC AGCTGGAGAAAGTGTACGACCCAAAGAATGGGGAGGACGAC < 41bp 1 0.390381163985233 1 0.138236075639725 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422305 chr19:49422315 nonsynonymous SNV 0.996 3 31 hm5C_associated_SNPs_25617 0 0 1 0 2 Ribosome 1 0.50023161870469 1 0.99953676259062 hm5C_site_26245 DeepMRMD:1;iRNA_m5C:0.99953676259062 26246 chr3 150264606 150264606 1 + C T LIHC 150264597 + 150264577 150264617 41 TTTCCGGGACAACATGGCGCCGTCCACGCCGCTCTTGACAG TTTCCGGGACAACATGGCGCCGTCCACGCTGCTCTTGACAG < 41bp 1 0.179319471266497 1 0.118523985147476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2A ENSG00000144895 CDS Human protein_coding chr3:150264597 chr3:150264606 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_25618 0 0 1 0 1 Cytosol 1 0.50023164395731 1 0.99953671208538 hm5C_site_26246 DeepMRMD:1;iRNA_m5C:0.99953671208538 26247 chr13 27216423 27216423 1 + A G LIHC 27216436 + 27216416 27216456 41 AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAG AGTGAAGGGGAACATTGAGCCCCGGCACTTGTGCCGGGGAG < 41bp 1 0.552255454354243 1 0.501769125461578 experiment 0.895489091291515 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216436 chr13:27216423 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_25619 0 0 0 0 1 cytosol 1 0.500231643921092 0.996461749076844 0.999536712157815 hm5C_site_26247 DeepMRMD:0.996461749076844;iRNA_m5C:0.999536712157815 26248 chr13 27216423 27216423 1 + A G LIHC 27216437 + 27216417 27216457 41 GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGC GTGAAGGGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGC < 41bp 1 0.20448829527895 1 0.693219244480133 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216437 chr13:27216423 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_25620 0 0 0 0 1 cytosol 1 0.500231643862469 0.613561511039734 0.999536712275063 hm5C_site_26248 DeepMRMD:0.613561511039734;iRNA_m5C:0.999536712275063 26249 chr13 27216423 27216423 1 + A G LIHC 27216438 + 27216418 27216458 41 TGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCT TGAAGGGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCT < 41bp 1 0.591046371406918 1 0.517708778381348 experiment 0.817907257186165 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216438 chr13:27216423 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_25621 0 0 0 0 1 cytosol 1 0.500231643921092 0.964582443237304 0.999536712157815 hm5C_site_26249 DeepMRMD:0.964582443237304;iRNA_m5C:0.999536712157815 26250 chr13 27216423 27216423 1 + A G LIHC 27216441 + 27216421 27216461 41 AGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCTCTG AGGGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCTCTG < 41bp 1 0.232570222648624 1 0.0900731980800629 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216441 chr13:27216423 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_25622 0 0 0 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26250 DeepMRMD:1;iRNA_m5C:0.999536712157815 26251 chr10 17277863 17277863 1 + A T LIHC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTTCTCTGCCTCTTCCTAACTTTTCCTCCCTG < 41bp 1 0.0807183416045682 1 0.564770221710205 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277863 synonymous SNV . 0 26 hm5C_associated_SNPs_25623 0 0 1 0 2 Ribosome 1 0.500231643921092 0.87045955657959 0.999536712157815 hm5C_site_26251 DeepMRMD:0.87045955657959;iRNA_m5C:0.999536712157815 26252 chr13 26956988 26956988 1 + A G LIHC 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TTTTAGTTATGGGTGAAGGTCCTGGGCGAGGAAGAGTAAAA < 41bp 1 0.136293517271895 1 0.227358371019363 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956988 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_25624 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26252 DeepMRMD:1;iRNA_m5C:0.999536712157815 26253 chr15 69747786 69747786 1 + A G LIHC 69747788 + 69747768 69747808 41 TGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGAGG TGAGGAGAAGAAAGTGGAGGCAAAGAAAGAAGAATCCGAGG < 41bp 1 0.406574066976159 1 0.592205762863159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747788 chr15:69747786 nonsynonymous SNV 0.999 0 19 hm5C_associated_SNPs_25625 0 0 1 0 1 Cytosol 1 0.500231643921008 0.815588474273682 0.999536712157984 hm5C_site_26253 DeepMRMD:0.815588474273682;iRNA_m5C:0.999536712157984 26254 chr15 69747786 69747786 1 + A G LIHC 69747803 + 69747783 69747823 41 GGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACA GGAGGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACA < 41bp 1 0.367114913511237 1 0.473363935947418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747803 chr15:69747786 nonsynonymous SNV 0.999 0 4 hm5C_associated_SNPs_25626 0 0 1 0 1 Cytosol 1 0.500231658372501 1 0.999536683254999 hm5C_site_26254 DeepMRMD:1;iRNA_m5C:0.999536683254999 26255 chr17 48696122 48696122 1 + T C LIHC 48696108 + 48696088 48696128 41 TTCGTGCTGACGGCCCAGTTCGTGCTAGTCAACGTGGTGAT TTCGTGCTGACGGCCCAGTTCGTGCTAGTCAACGCGGTGAT < 41bp 1 0.515948495823597 1 0.347740232944489 experiment 0.968103008352806 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48696108 chr17:48696122 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_25627 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_26255 DeepMRMD:1;iRNA_m5C:0.999536712157816 26256 chr19 10794137 10794137 1 + T C LIHC 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCCCCGACACCCCTCTCGCCCTTG < 41bp 1 0.203426261450726 1 0.301589816808701 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794137 synonymous SNV . 0 22 hm5C_associated_SNPs_25628 0 0 1 0 2 Cytosol 1 0.500231643921222 1 0.999536712157556 hm5C_site_26256 DeepMRMD:1;iRNA_m5C:0.999536712157556 26257 chr19 10794137 10794137 1 + T C LIHC 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCCCCGACACCCCTCTCGCCCTTGATGCCA < 41bp 1 0.186230539734211 1 0.0253053903579712 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794137 synonymous SNV . 0 16 hm5C_associated_SNPs_25629 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26257 DeepMRMD:1;iRNA_m5C:0.999536712157815 26258 chr3 50005941 50005941 1 + A G LIHC 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAGAGTCCAGTTCAAGACCAAGATAAGT < 41bp 1 0.0881833317289301 1 0.236710667610168 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005941 synonymous SNV . 0 16 hm5C_associated_SNPs_25630 0 0 1 2 0 Nucleus 1 0.50023164921013 1 0.999536701579741 hm5C_site_26258 DeepMRMD:1;iRNA_m5C:0.999536701579741 26259 chr9 134322028 134322028 1 + T C LIHC 134322022 + 134322002 134322042 41 TACATACCATGACATGCTTCCTGCTTTTGTAAGTCTTCAGA TACATACCATGACATGCTTCCTGCTTCTGTAAGTCTTCAGA < 41bp 1 0.0945932987456448 1 0.124847084283829 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134322022 chr9:134322028 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_25631 0 0 1 0 1 Nucleus 1 0.500231643879465 1 0.99953671224107 hm5C_site_26259 DeepMRMD:1;iRNA_m5C:0.99953671224107 26260 chrX 151806785 151806785 1 + C T LIHC 151806795 + 151806775 151806815 41 TGCCCGAAGTCGTCCTGAACCTCTTCAACTGGTAAGCGGGC TGCCCGAAGTTGTCCTGAACCTCTTCAACTGGTAAGCGGGC < 41bp 1 0.326709477626887 1 0.211923450231552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GABRQ ENSG00000147402 CDS Human other chrX:151806795 chrX:151806785 synonymous SNV . 0 11 hm5C_associated_SNPs_25632 0 0 0 0 1 chromatin 1 0.500228773382469 1 0.999542453235061 hm5C_site_26260 DeepMRMD:1;iRNA_m5C:0.999542453235061 26261 chr6 107113765 107113765 1 + A G LIHC 107113763 + 107113743 107113783 41 CAGCAGCTTCTTACAGTAGCCAAATGGTTTGAAAAACAAGT CAGCAGCTTCTTACAGTAGCCAGATGGTTTGAAAAACAAGT < 41bp 1 0.255613883920622 1 0.799917101860046 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107113763 chr6:107113765 nonsynonymous SNV 0.934 0 23 hm5C_associated_SNPs_25633 0 0 1 0 0 Ribosome 1 0.500231667096013 0.400165796279908 0.999536665807974 hm5C_site_26261 DeepMRMD:0.400165796279908;iRNA_m5C:0.999536665807974 26262 chr11 65827417 65827417 1 + C T LIHC 65827410 + 65827390 65827430 41 CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTGCCAGACT CAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACT < 41bp 1 0.165027436850722 1 0.0499608814716339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827410 chr11:65827417 synonymous SNV . 0 28 hm5C_associated_SNPs_25634 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26262 DeepMRMD:1;iRNA_m5C:0.999536712157815 26263 chr11 68204430 68204430 1 + C T LIHC 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG TCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG < 41bp 1 0.141284573499823 1 0.124062776565552 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204430 synonymous SNV . 0 1 hm5C_associated_SNPs_25635 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643924093 1 0.999536712151813 hm5C_site_26263 DeepMRMD:1;iRNA_m5C:0.999536712151813 26264 chr14 64990075 64990075 1 + A G LIHC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGGGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC < 41bp 1 0.661517049274128 1 0.591456055641174 experiment 0.676965901451744 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990075 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_25636 0 0 1 0 1 Cytosol 1 0.500232024918457 0.817087888717652 0.999535950163087 hm5C_site_26264 DeepMRMD:0.817087888717652;iRNA_m5C:0.999535950163087 26265 chr1 110134765 110134765 1 + T C LIHC 110134762 + 110134742 110134782 41 GAGATCTATACTCACTTCACCTGTGCCACAGACACGAAGAA GAGATCTATACTCACTTCACCTGCGCCACAGACACGAAGAA < 41bp 1 0.361630341888231 1 0.512643933296204 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GNAI3 ENSG00000065135 CDS Human protein_coding chr1:110134762 chr1:110134765 synonymous SNV . 0 24 hm5C_associated_SNPs_25637 0 0 1 0 0 Cytosol 1 0.500231643849508 0.974712133407592 0.999536712300984 hm5C_site_26265 DeepMRMD:0.974712133407592;iRNA_m5C:0.999536712300984 26266 chr5 33445476 33445476 1 + A G LIHC 33445465 + 33445445 33445485 41 GAGAAGCAAAAGGAAGGAGGCAAAAAGAAGAACAAAGAAGG GAGAAGCAAAAGGAAGGAGGCAAAAAGAAGAGCAAAGAAGG < 41bp 1 0.485802211714121 1 0.517245292663574 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TARS ENSG00000113407 CDS Human protein_coding chr5:33445465 chr5:33445476 nonsynonymous SNV 0.997 0 32 hm5C_associated_SNPs_25638 0 0 1 0 2 Nucleus 1 0.500231643932655 0.965509414672852 0.999536712134689 hm5C_site_26266 DeepMRMD:0.965509414672852;iRNA_m5C:0.999536712134689 26267 chr5 33445476 33445476 1 + A G LIHC 33445477 + 33445457 33445497 41 GAAGGAGGCAAAAAGAAGAACAAAGAAGGATCTGGAGATGG GAAGGAGGCAAAAAGAAGAGCAAAGAAGGATCTGGAGATGG < 41bp 1 0.420247619134152 1 0.240496218204498 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TARS ENSG00000113407 CDS Human protein_coding chr5:33445477 chr5:33445476 nonsynonymous SNV 0.997 0 20 hm5C_associated_SNPs_25639 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26267 DeepMRMD:1;iRNA_m5C:0.999536712157815 26268 chr12 132588968 132588968 1 + G T LIHC 132588948 + 132588928 132588968 41 GACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGG GACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGT < 41bp 1 0.232307560786784 1 0.15048611164093 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588948 chr12:132588968 nonsynonymous SNV 0.028 0 41 hm5C_associated_SNPs_25641 0 0 0 0 1 chromatin 1 0.500231643699572 1 0.999536712600856 hm5C_site_26268 DeepMRMD:1;iRNA_m5C:0.999536712600856 26269 chr12 132588968 132588968 1 + G T LIHC 132588949 + 132588929 132588969 41 ACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGGC ACCCAGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGTC < 41bp 1 0.231507806698053 1 0.0931199193000793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588949 chr12:132588968 nonsynonymous SNV 0.028 0 40 hm5C_associated_SNPs_25642 0 0 0 0 1 chromatin 1 0.500231643920976 1 0.999536712158048 hm5C_site_26269 DeepMRMD:1;iRNA_m5C:0.999536712158048 26270 chr12 132588968 132588968 1 + G T LIHC 132588953 + 132588933 132588973 41 AGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTG AGAGTCCCACGCAGCCCAGTCCGGGGCCGGGGCAGTCCTTG < 41bp 1 0.650435613305895 1 0.915719747543335 experiment 0.699128773388211 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588953 chr12:132588968 nonsynonymous SNV 0.028 0 36 hm5C_associated_SNPs_25643 0 0 0 0 1 chromatin 1 0.500231643572691 0.16856050491333 0.999536712854617 hm5C_site_26270 DeepMRMD:0.16856050491333;iRNA_m5C:0.999536712854617 26271 chr12 132588968 132588968 1 + G T LIHC 132588959 + 132588939 132588979 41 CCACGCAGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAAT CCACGCAGCCCAGTCCGGGGCCGGGGCAGTCCTTGCAGAAT < 41bp 1 0.527104659806573 1 0.657947897911072 experiment 0.945790680386854 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588959 chr12:132588968 nonsynonymous SNV 0.028 0 30 hm5C_associated_SNPs_25644 0 0 0 0 1 chromatin 1 0.500231643921092 0.684104204177856 0.999536712157815 hm5C_site_26271 DeepMRMD:0.684104204177856;iRNA_m5C:0.999536712157815 26272 chr12 132588968 132588968 1 + G T LIHC 132588965 + 132588945 132588985 41 AGCCCAGTCCGGGGCCGGGGCAGGCCTTGCAGAATGTGCGT AGCCCAGTCCGGGGCCGGGGCAGTCCTTGCAGAATGTGCGT < 41bp 1 0.220054064098921 1 0.25644850730896 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588965 chr12:132588968 nonsynonymous SNV 0.028 0 24 hm5C_associated_SNPs_25646 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_26272 DeepMRMD:1;iRNA_m5C:0.999536712157815 26273 chr15 41854881 41854881 1 + G A LIHC 41854884 + 41854864 41854904 41 AACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTT AACTACGAAGATCGGGGAACCCGCTCCCTCTCCATCTGTTT < 41bp 1 0.0832928276879509 1 0.104396730661392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854884 chr15:41854881 nonsynonymous SNV 0.972 0 18 hm5C_associated_SNPs_25647 0 0 0 0 1 Ribosome 1 0.50023172689547 1 0.999536546209061 hm5C_site_26273 DeepMRMD:1;iRNA_m5C:0.999536546209061 26274 chr15 41854881 41854881 1 + G A LIHC 41854885 + 41854865 41854905 41 ACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTTT ACTACGAAGATCGGGGAACCCGCTCCCTCTCCATCTGTTTT < 41bp 1 0.179770978360441 1 0.0665972232818604 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854885 chr15:41854881 nonsynonymous SNV 0.972 0 17 hm5C_associated_SNPs_25648 0 0 0 0 1 Ribosome 1 0.500231646331318 1 0.999536707337364 hm5C_site_26274 DeepMRMD:1;iRNA_m5C:0.999536707337364 26275 chr18 29116339 29116339 1 + T C LIHC 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCCGCCATTGACAAACCACCTGGCATGGCAGAAAAA < 41bp 1 0.12201825906349 1 0.139023840427399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116339 nonsynonymous SNV 0.664 1 10 hm5C_associated_SNPs_25649 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643791011 1 0.999536712417979 hm5C_site_26275 DeepMRMD:1;iRNA_m5C:0.999536712417979 26276 chr18 29116339 29116339 1 + T C LIHC 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCCGCCATTGACAAACCACCTGGCATGGCAGAAAAATGGA < 41bp 1 0.425475266180102 1 0.167761027812958 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116339 nonsynonymous SNV 0.664 1 6 hm5C_associated_SNPs_25650 0 0 1 0 1 Endoplasmic reticulum 1 0.50023503977798 1 0.999529920444039 hm5C_site_26276 DeepMRMD:1;iRNA_m5C:0.999529920444039 26277 chr20 18462420 18462420 1 + C T LIHC 18462438 + 18462418 18462458 41 CACAGGTTTGGTCCGGGCACCCTGTGGACTCTGCCCGGTGA CATAGGTTTGGTCCGGGCACCCTGTGGACTCTGCCCGGTGA < 41bp 1 0.326603319430231 1 0.393308371305466 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462438 chr20:18462420 nonsynonymous SNV 0.687 2 3 hm5C_associated_SNPs_25651 0 0 1 0 1 Ribosome 1 0.50023164391961 1 0.99953671216078 hm5C_site_26277 DeepMRMD:1;iRNA_m5C:0.99953671216078 26278 chr20 25397755 25397755 1 + A G LIHC 25397762 + 25397742 25397782 41 ATGAAGCAAAGTCAGGTGGACGAAGTGATTTGATACCAACT ATGAAGCAAAGTCGGGTGGACGAAGTGATTTGATACCAACT < 41bp 1 0.366800122324513 1 0.534420609474182 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GINS1 ENSG00000101003 CDS Human protein_coding chr20:25397762 chr20:25397755 synonymous SNV . 0 14 hm5C_associated_SNPs_25652 0 0 1 0 2 Ribosome 1 0.500231860564335 0.931158781051636 0.99953627887133 hm5C_site_26278 DeepMRMD:0.931158781051636;iRNA_m5C:0.99953627887133 26279 chr22 22040824 22040824 1 + T C LIHC 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCACCGCGATGGCCCCGGAGACCACACATGAAGC < 41bp 1 0.245700617010919 1 0.479937523603439 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040824 nonsynonymous SNV 0.035 0 20 hm5C_associated_SNPs_25653 0 0 1 0 2 Cytosol 1 0.500231643921197 1 0.999536712157606 hm5C_site_26279 DeepMRMD:1;iRNA_m5C:0.999536712157606 26280 chr6 31929371 31929371 1 + T C LIHC 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCCCAGGAGCAGTGGGCCATCCCTGTGGAC < 41bp 1 0.277120197907508 1 0.373313963413239 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929371 nonsynonymous SNV . 0 14 hm5C_associated_SNPs_25654 0 0 1 0 2 chromatin 1 0.500231643922488 1 0.999536712155025 hm5C_site_26280 DeepMRMD:1;iRNA_m5C:0.999536712155025 26281 chr7 55270298 55270298 1 + A G LIHC 55270305 + 55270285 55270325 41 GACAGCATAGACGACACCTTCCTCCCAGTGCCTGGTGAGTG GACAGCATAGACGGCACCTTCCTCCCAGTGCCTGGTGAGTG < 41bp 1 0.0734109581391101 1 0.0574462711811066 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55270305 chr7:55270298 nonsynonymous SNV 0.931 1 14 hm5C_associated_SNPs_25655 0 0 1 0 2 Nucleus 1 0.500231643921089 1 0.999536712157821 hm5C_site_26281 DeepMRMD:1;iRNA_m5C:0.999536712157821 26282 chr12 50452876 50452876 1 + T C LIHC 50452871 + 50452851 50452891 41 GCCAAGTCTCCAAGAATGACCTGTATCATGCTGGGGAGCTG GCCAAGTCTCCAAGAATGACCTGTACCATGCTGGGGAGCTG < 41bp 1 0.482457215975387 1 0.117968082427979 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50452871 chr12:50452876 synonymous SNV . 0 26 hm5C_associated_SNPs_25656 0 0 0 0 1 exosome 1 0.500231643937563 1 0.999536712124874 hm5C_site_26282 DeepMRMD:1;iRNA_m5C:0.999536712124874 26283 chr1 162470036 162470036 1 + A G LIHC 162470019 + 162469999 162470039 41 CTCATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCAGGT CTCATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCGGGT < 41bp 1 0.404748944099756 1 0.123593032360077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162470019 chr1:162470036 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_25657 0 0 1 0 1 chromatin 1 0.50023164382444 1 0.999536712351121 hm5C_site_26283 DeepMRMD:1;iRNA_m5C:0.999536712351121 26284 chr2 32773060 32773060 1 + A G LIHC 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAGCAT < 41bp 1 0.17874527585826 1 0.526253879070282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773060 synonymous SNV . 0 38 hm5C_associated_SNPs_25658 0 0 1 0 1 Nucleus 1 0.500231644059409 0.947492241859436 0.999536711881182 hm5C_site_26284 DeepMRMD:0.947492241859436;iRNA_m5C:0.999536711881182 26285 chr2 55056511 55056511 1 + A G LIHC 55056514 + 55056494 55056534 41 ATGTATGCTTGTGAAGAAGGCTTTGCCACTGGTGGGCGAGA ATGTATGCTTGTGAAGAGGGCTTTGCCACTGGTGGGCGAGA < 41bp 1 0.0241561645372368 1 0.0604739487171173 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55056514 chr2:55056511 synonymous SNV . 0 18 hm5C_associated_SNPs_25659 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26285 DeepMRMD:1;iRNA_m5C:0.999536712157815 26286 chr3 10076415 10076415 1 + A G LIHC 10076403 + 10076383 10076423 41 TAGAAGAATTTGTTAGTGGCCTGGAGTCTTACATTGAGGAT TAGAAGAATTTGTTAGTGGCCTGGAGTCTTACGTTGAGGAT < 41bp 1 0.689720474257349 1 0.42510998249054 experiment 0.620559051485302 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10076403 chr3:10076415 nonsynonymous SNV 0.998 0 33 hm5C_associated_SNPs_25660 1 0 1 0 2 Cytosol 1 0.500231643921114 1 0.999536712157773 hm5C_site_26286 DeepMRMD:1;iRNA_m5C:0.999536712157773 Fanconi anemia Fanconi anemia 26287 chr5 65118671 65118671 1 + G T LIHC 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATTC < 41bp 1 0.410987106595632 1 0.163657635450363 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118671 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_25661 0 0 1 0 1 Ribosome 1 0.500231644022392 1 0.999536711955216 hm5C_site_26287 DeepMRMD:1;iRNA_m5C:0.999536711955216 26288 chr6 26093168 26093168 1 + A G LIHC 26093171 + 26093151 26093191 41 GCACCCAGGCCTGGATCAGCCCCTCATTGTGATCTGGGGTA GCACCCAGGCCTGGATCGGCCCCTCATTGTGATCTGGGGTA < 41bp 1 0.129963397577377 1 0.0348778069019318 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26093171 chr6:26093168 nonsynonymous SNV 0.766 3 18 hm5C_associated_SNPs_25662 0 0 1 0 1 Endoplasmic reticulum 1 0.50022531231438 1 0.99954937537124 hm5C_site_26288 DeepMRMD:1;iRNA_m5C:0.99954937537124 26289 chr8 17817570 17817570 1 + G T LIHC 17817579 + 17817559 17817599 41 GCATCAAATTTGGATGATTTCTACCCAGCAGAAGAAGACAC GCATCAAATTTTGATGATTTCTACCCAGCAGAAGAAGACAC < 41bp 1 0.309613906363773 1 0.0736866593360901 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17817579 chr8:17817570 nonsynonymous SNV 0.998 0 12 hm5C_associated_SNPs_25663 0 0 1 0 1 Nucleus 1 0.50023164417086 1 0.999536711658281 hm5C_site_26289 DeepMRMD:1;iRNA_m5C:0.999536711658281 26290 chr11 66062731 66062731 1 + G A LIHC 66062714 + 66062694 66062734 41 CGGGGGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTGGCC CGGGGGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTAGCC < 41bp 1 0.105483542808806 1 0.1630499958992 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66062714 chr11:66062731 synonymous SNV . 0 38 hm5C_associated_SNPs_25664 0 0 0 0 0 exosome 1 0.500231643101973 1 0.999536713796053 hm5C_site_26290 DeepMRMD:1;iRNA_m5C:0.999536713796053 26291 chr11 66062731 66062731 1 + G A LIHC 66062715 + 66062695 66062735 41 GGGGGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTGGCCA GGGGGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTAGCCA < 41bp 1 0.250087270520238 1 0.0610573589801788 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66062715 chr11:66062731 synonymous SNV . 0 37 hm5C_associated_SNPs_25665 0 0 0 0 0 exosome 1 0.500231643011273 1 0.999536713977454 hm5C_site_26291 DeepMRMD:1;iRNA_m5C:0.999536713977454 26292 chr11 66062731 66062731 1 + G A LIHC 66062716 + 66062696 66062736 41 GGGGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTGGCCAC GGGGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTAGCCAC < 41bp 1 0.416586352566997 1 0.121779799461365 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66062716 chr11:66062731 synonymous SNV . 0 36 hm5C_associated_SNPs_25666 0 0 0 0 0 exosome 1 0.500231641850929 1 0.999536716298141 hm5C_site_26292 DeepMRMD:1;iRNA_m5C:0.999536716298141 26293 chr11 66062731 66062731 1 + G A LIHC 66062717 + 66062697 66062737 41 GGGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTGGCCACA GGGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTAGCCACA < 41bp 1 0.278698244856533 1 0.160930842161179 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66062717 chr11:66062731 synonymous SNV . 0 35 hm5C_associated_SNPs_25667 0 0 0 0 0 exosome 1 0.500231640183203 1 0.999536719633594 hm5C_site_26293 DeepMRMD:1;iRNA_m5C:0.999536719633594 26294 chr11 66062731 66062731 1 + G A LIHC 66062718 + 66062698 66062738 41 GGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTGGCCACAG GGCCGTGCCCAGCGGGCCCCCGCTGTCCCGCGTAGCCACAG < 41bp 1 0.574891982013705 1 0.635665655136108 experiment 0.850216035972589 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66062718 chr11:66062731 synonymous SNV . 0 34 hm5C_associated_SNPs_25668 0 0 0 0 0 exosome 1 0.500231616793277 0.728668689727784 0.999536766413446 hm5C_site_26294 DeepMRMD:0.728668689727784;iRNA_m5C:0.999536766413446 26295 chr16 67575597 67575597 1 + T C LIHC 67575598 + 67575578 67575618 41 CCCTCAGCTGCTTCTTCTGTCAACAAGGCCTCCACAGTCAC CCCTCAGCTGCTTCTTCTGCCAACAAGGCCTCCACAGTCAC < 41bp 1 0.582581199464387 1 0.386766910552979 experiment 0.834837601071226 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575598 chr16:67575597 nonsynonymous SNV 0.979 3 20 hm5C_associated_SNPs_25669 0 0 1 0 2 unknown 1 0.500231298306489 1 0.999537403387022 hm5C_site_26295 DeepMRMD:1;iRNA_m5C:0.999537403387022 26296 chr16 90027412 90027412 1 + C T LIHC 90027406 + 90027386 90027426 41 CCCTGTGTGAGCTCCAAAGTCAGCCACCAAGCTGAATACGA CCCTGTGTGAGCTCCAAAGTCAGCCATCAAGCTGAATACGA < 41bp 1 0.53724156348172 1 0.189499020576477 experiment 0.92551687303656 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90027406 chr16:90027412 synonymous SNV . 0 27 hm5C_associated_SNPs_25670 0 0 1 0 1 Ribosome 1 0.500232442771137 1 0.999535114457726 hm5C_site_26296 DeepMRMD:1;iRNA_m5C:0.999535114457726 26297 chr20 3781980 3781980 1 + A G LIHC 3781963 + 3781943 3781983 41 CCCCTGGCCCTAGGTCGCTTCTCTCTGACCCCTGCAGAGGG CCCCTGGCCCTAGGTCGCTTCTCTCTGACCCCTGCAGGGGG < 41bp 1 0.187987167211782 1 0.691020667552948 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781963 chr20:3781980 nonsynonymous SNV 0.001 0 38 hm5C_associated_SNPs_25671 0 0 1 0 1 Ribosome 1 0.500231643921092 0.617958664894104 0.999536712157815 hm5C_site_26297 DeepMRMD:0.617958664894104;iRNA_m5C:0.999536712157815 26298 chr3 32169681 32169681 1 + A G LIHC 32169667 + 32169647 32169687 41 TTTGAAGAAACAGTGAATGGCAGAAAACTGACAGACATCAT TTTGAAGAAACAGTGAATGGCAGAAAACTGACAGGCATCAT < 41bp 1 0.686652427439612 1 0.376573532819748 experiment 0.626695145120776 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPD1L ENSG00000152642 CDS Human protein_coding chr3:32169667 chr3:32169681 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_25672 0 0 0 0 1 Cytosol 1 0.500231643887542 1 0.999536712224916 hm5C_site_26298 DeepMRMD:1;iRNA_m5C:0.999536712224916 26299 chr5 98115463 98115463 1 + C G LIHC 98115483 + 98115463 98115503 41 CATTCTGCCGTGTTGGGTATCAGTGACCTCATGAGCCAGAG GATTCTGCCGTGTTGGGTATCAGTGACCTCATGAGCCAGAG < 41bp 1 0.61801553283273 1 0.792576491832733 experiment 0.763968934334539 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RGMB ENSG00000174136 CDS Human protein_coding chr5:98115483 chr5:98115463 nonsynonymous SNV 0.998 5 1 hm5C_associated_SNPs_25673 0 0 1 0 0 nucleus 1 0.500231643921727 0.414847016334534 0.999536712156545 hm5C_site_26299 DeepMRMD:0.414847016334534;iRNA_m5C:0.999536712156545 26300 chr6 38029448 38029448 1 + C T LIHC 38029468 + 38029448 38029488 41 CACCAGTGACAACAACAATACCTCGATAACCACGCCAACTC TACCAGTGACAACAACAATACCTCGATAACCACGCCAACTC < 41bp 1 0.142235336033046 1 0.289323002099991 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFAND3 ENSG00000156639 CDS Human protein_coding chr6:38029468 chr6:38029448 synonymous SNV . 0 1 hm5C_associated_SNPs_25674 0 0 1 0 1 Cytosol 1 0.500235779313104 1 0.999528441373792 hm5C_site_26300 DeepMRMD:1;iRNA_m5C:0.999528441373792 26301 chr6 72003250 72003250 1 + C G LIHC 72003257 + 72003237 72003277 41 ACTTCAAAGATATCCGATATCAAAATGACTTGAGCAATCTT ACTTCAAAGATATGCGATATCAAAATGACTTGAGCAATCTT < 41bp 1 0.679069318450896 1 0.313617646694183 experiment 0.641861363098207 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003257 chr6:72003250 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_25675 0 0 1 0 2 exosome 1 0.500229046964067 1 0.999541906071866 hm5C_site_26301 DeepMRMD:1;iRNA_m5C:0.999541906071866 26302 chr14 71570336 71570336 1 + T C LIHC 71570324 + 71570304 71570344 41 AGCCACGAACAGCTTAAAGACATTCTTGGGGGTCCTATCAG AGCCACGAACAGCTTAAAGACATTCTTGGGGGCCCTATCAG < 41bp 1 0.0573424923083356 1 0.184081703424454 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71570324 chr14:71570336 synonymous SNV . 0 33 hm5C_associated_SNPs_25676 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920997 1 0.999536712158007 hm5C_site_26302 DeepMRMD:1;iRNA_m5C:0.999536712158007 26303 chr16 21636384 21636384 1 + A G LIHC 21636393 + 21636373 21636413 41 GAGCCAACTAGAGGCAGGGTCATCCTTGCCCTTGTCCTCCC GAGCCAACTAGGGGCAGGGTCATCCTTGCCCTTGTCCTCCC < 41bp 1 0.424764811942876 1 0.126813024282455 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL9 ENSG00000197006 CDS Human protein_coding chr16:21636393 chr16:21636384 synonymous SNV . 0 12 hm5C_associated_SNPs_25677 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26303 DeepMRMD:1;iRNA_m5C:0.999536712157815 26304 chr20 5932775 5932775 1 + T C LIHC 5932767 + 5932747 5932787 41 GAAAATGGAGAGAAAGAGAACACAGACCTGATCTGAGTAAA GAAAATGGAGAGAAAGAGAACACAGACCCGATCTGAGTAAA < 41bp 1 0.471408572098565 1 0.592701375484467 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5932767 chr20:5932775 synonymous SNV . 0 29 hm5C_associated_SNPs_25678 0 0 1 0 1 Ribosome 1 0.500231643921092 0.814597249031066 0.999536712157815 hm5C_site_26304 DeepMRMD:0.814597249031066;iRNA_m5C:0.999536712157815 26305 chr6 31602092 31602092 1 + A G LIHC 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGG < 41bp 1 0.176213707054964 1 0.053958922624588 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602092 nonsynonymous SNV 0.998 1 41 hm5C_associated_SNPs_25679 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26305 DeepMRMD:1;iRNA_m5C:0.999536712157815 26306 chr6 31602092 31602092 1 + A G LIHC 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGGT < 41bp 1 0.303379174483905 1 0.0938403904438019 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602092 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_25680 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_26306 DeepMRMD:1;iRNA_m5C:0.999536712157815 26307 chr6 31602092 31602092 1 + A G LIHC 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGGTA < 41bp 1 0.382271196382369 1 0.196896582841873 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602092 nonsynonymous SNV 0.998 1 39 hm5C_associated_SNPs_25681 0 0 1 0 2 Ribosome 1 0.5002316439211 1 0.999536712157801 hm5C_site_26307 DeepMRMD:1;iRNA_m5C:0.999536712157801 26308 chr6 31602092 31602092 1 + A G LIHC 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGGTACA < 41bp 1 0.45947714736414 1 0.814906477928162 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602092 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_25682 0 0 1 0 2 Ribosome 1 0.500231643921092 0.370187044143676 0.999536712157815 hm5C_site_26308 DeepMRMD:0.370187044143676;iRNA_m5C:0.999536712157815 26309 chr6 31602092 31602092 1 + A G LIHC 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGGTACAGGCA < 41bp 1 0.434314640073583 1 0.84959888458252 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602092 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_25683 0 0 1 0 2 Ribosome 1 0.500231643921092 0.30080223083496 0.999536712157815 hm5C_site_26309 DeepMRMD:0.30080223083496;iRNA_m5C:0.999536712157815 26310 chr15 79185884 79185884 1 + T C LIHC 79185883 + 79185863 79185903 41 ATATTTTTGTCTTCATAGCTCTTTTATCTTCCTGCCAAGAA ATATTTTTGTCTTCATAGCTCCTTTATCTTCCTGCCAAGAA < 41bp 1 0.0169744174343105 1 0.0831121206283569 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79185883 chr15:79185884 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_25684 0 0 1 0 2 Nucleus 1 0.500231643807666 1 0.999536712384668 hm5C_site_26310 DeepMRMD:1;iRNA_m5C:0.999536712384668 26311 chr22 42042966 42042966 1 + T A LIHC 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCACTCAAGCCTCCTCCAATAAAGCTCTATCGG < 41bp 1 0.0958681951273633 1 0.207510054111481 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042966 synonymous SNV . 0 11 hm5C_associated_SNPs_25685 0 0 1 0 1 Cytosol 1 0.500210161585078 1 0.999579676829845 hm5C_site_26311 DeepMRMD:1;iRNA_m5C:0.999579676829845 26312 chr3 127323790 127323790 1 + A G LIHC 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GGGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT < 41bp 1 0.693100456250976 1 0.554031848907471 experiment 0.613799087498047 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323790 nonsynonymous SNV 0.939 2 2 hm5C_associated_SNPs_25686 0 0 1 0 2 Cytosol 1 0.500229964496686 0.891936302185058 0.999540071006628 hm5C_site_26312 DeepMRMD:0.891936302185058;iRNA_m5C:0.999540071006628 26313 chr20 44506544 44506544 1 + G T LIHC 44506564 + 44506544 44506584 41 GCCACTGAAGTCCAAGAAGGCTTTTGGAATCTGTGGAGAGA TCCACTGAAGTCCAAGAAGGCTTTTGGAATCTGTGGAGAGA < 41bp 1 0.0713727492390508 1 0.161932647228241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZSWIM3 ENSG00000132801 CDS Human protein_coding chr20:44506564 chr20:44506544 nonsynonymous SNV 0.400 0 1 hm5C_associated_SNPs_25689 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26313 DeepMRMD:1;iRNA_m5C:0.999536712157815 26314 chr8 23104294 23104294 1 + A G LIHC 23104304 + 23104284 23104324 41 GAGGACGAGGAGCGCATGTCCTTCCTGTTCTCCGCTTTCAA GAGGACGAGGGGCGCATGTCCTTCCTGTTCTCCGCTTTCAA < 41bp 1 0.182721769649868 1 0.0657308399677277 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23104304 chr8:23104294 nonsynonymous SNV 0.997 4 11 hm5C_associated_SNPs_25690 0 0 1 1 1 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_26314 DeepMRMD:1;iRNA_m5C:0.99953671215781 26315 chrX 107807134 107807134 1 + C A LIHC 107807137 + 107807117 107807157 41 TGATGGAATTCCAGGGCCACCAGGACCAAAAGGAATCAGAG TGATGGAATTCCAGGGCAACCAGGACCAAAAGGAATCAGAG < 41bp 1 0.625163742747729 1 0.797241449356079 experiment 0.749672514504542 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107807137 chrX:107807134 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_25691 0 0 1 0 0 Ribosome 1 0.500231643921092 0.405517101287842 0.999536712157815 hm5C_site_26315 DeepMRMD:0.405517101287842;iRNA_m5C:0.999536712157815 26316 chr4 119631228 119631228 1 + C A LIHC 119631220 + 119631200 119631240 41 GAAACATATGCATCCTATTTCAGTGCTCCTAATTCCTACTT GAAACATATGCATCCTATTTCAGTGCTCATAATTCCTACTT < 41bp 1 0.542298589512218 1 0.268441736698151 experiment 0.915402820975564 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control METTL14 ENSG00000145388 CDS Human protein_coding chr4:119631220 chr4:119631228 nonsynonymous SNV 0.920 3 29 hm5C_associated_SNPs_25692 0 0 1 0 1 Nucleus 1 0.500231643626876 1 0.999536712746249 hm5C_site_26316 DeepMRMD:1;iRNA_m5C:0.999536712746249 26317 chr10 6265921 6265921 1 + A G LIHC 6265930 + 6265910 6265950 41 TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTCTTC TTCAATTTCAGGGGAGATGCCCTACCTGAAATGCCCTCTTC < 41bp 1 0.0517619766228927 1 0.123281687498093 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6265930 chr10:6265921 nonsynonymous SNV 0.996 2 12 hm5C_associated_SNPs_25693 0 0 1 0 2 Ribosome 1 0.500231643921112 1 0.999536712157777 hm5C_site_26317 DeepMRMD:1;iRNA_m5C:0.999536712157777 26318 chr11 65351997 65351997 1 + A G LIHC 65352003 + 65351983 65352023 41 ACATCAAGCAGAACAACAAGCAGGTGAGATGGGGTGGGGGA ACATCAAGCAGAACGACAAGCAGGTGAGATGGGGTGGGGGA < 41bp 1 0.571467909253659 1 0.938925623893738 experiment 0.857064181492681 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65352003 chr11:65351997 nonsynonymous SNV 1.000 5 15 hm5C_associated_SNPs_25694 0 0 1 0 2 chromatin 1 0.500231643895298 0.122148752212524 0.999536712209404 hm5C_site_26318 DeepMRMD:0.122148752212524;iRNA_m5C:0.999536712209404 26319 chr15 90771568 90771568 1 + T C LIHC 90771587 + 90771567 90771607 41 TTGCTCTACCGGCACCGGAACAGCATGAAAGTCTTCCTGAA TCGCTCTACCGGCACCGGAACAGCATGAAAGTCTTCCTGAA < 41bp 1 0.650884123544597 1 0.566934525966644 experiment 0.698231752910806 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90771587 chr15:90771568 nonsynonymous SNV 0.933 2 2 hm5C_associated_SNPs_25695 0 0 1 0 0 chromatin 1 0.500231643917262 0.866130948066712 0.999536712165476 hm5C_site_26319 DeepMRMD:0.866130948066712;iRNA_m5C:0.999536712165476 26320 chr19 11141502 11141502 1 + G A LIHC 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGAGCTCGGCCTGAACCTCCAGTCGGC < 41bp 1 0.514896454871662 1 0.773830533027649 experiment 0.970207090256675 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141502 nonsynonymous SNV 0.987 4 17 hm5C_associated_SNPs_25696 0 0 1 0 2 Nucleus 1 0.500231643921092 0.452338933944702 0.999536712157815 hm5C_site_26320 DeepMRMD:0.452338933944702;iRNA_m5C:0.999536712157815 26321 chr20 43545448 43545448 1 + A G LIHC 43545459 + 43545439 43545479 41 CATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC CATTTTGAGGCCCATGAGGCCGCACAGCAGGCCATCAACAC < 41bp 1 0.285151010392997 1 0.0426983833312988 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545459 chr20:43545448 nonsynonymous SNV 0.684 4 10 hm5C_associated_SNPs_25697 0 0 1 0 1 chromatin 1 0.50023164393775 1 0.9995367121245 hm5C_site_26321 DeepMRMD:1;iRNA_m5C:0.9995367121245 26322 chr2 62934345 62934345 1 + A G LIHC 62934334 + 62934314 62934354 41 TTGACTGATCATCATGGCTTCAGTTTGGAAGAGACTGCAGC TTGACTGATCATCATGGCTTCAGTTTGGAAGGGACTGCAGC < 41bp 1 0.109475924049422 1 0.0521164834499359 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EHBP1 ENSG00000115504 CDS Human protein_coding chr2:62934334 chr2:62934345 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_25698 0 0 1 0 1 Nucleus 1 0.500231638389762 1 0.999536723220476 hm5C_site_26322 DeepMRMD:1;iRNA_m5C:0.999536723220476 26323 chr5 71492183 71492183 1 + G A LIHC 71492181 + 71492161 71492201 41 GGCCAGTGGGGATGACCGAGCCGAAGAAGACATGGATGAGG GGCCAGTGGGGATGACCGAGCCAAAGAAGACATGGATGAGG < 41bp 1 0.322176580244157 1 0.443088471889496 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71492181 chr5:71492183 nonsynonymous SNV 0.839 4 23 hm5C_associated_SNPs_25699 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26323 DeepMRMD:1;iRNA_m5C:0.999536712157815 26324 chr6 28239932 28239932 1 + T G LIHC 28239937 + 28239917 28239957 41 GAGCTCTGTCAACAGTGCTACAGCCCGAGACCCATACCAAG GAGCTCTGTCAACAGGGCTACAGCCCGAGACCCATACCAAG < 41bp 1 0.268700670077701 1 0.36596804857254 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZSCAN26 ENSG00000197062;ENSG00000197062 ncRNA_exonic;splicing Human other chr6:28239937 chr6:28239932 . 0.019 0 16 hm5C_associated_SNPs_25700 0 0 0 0 0 Cytosol 1 0.500231643920268 1 0.999536712159464 hm5C_site_26324 DeepMRMD:1;iRNA_m5C:0.999536712159464 26325 chr7 94043219 94043219 1 + G T LIHC 94043239 + 94043219 94043259 41 GAAAAGGTGAACAGGGTCCCCCTGGTCCTCCAGGCTTCCAG TAAAAGGTGAACAGGGTCCCCCTGGTCCTCCAGGCTTCCAG < 41bp 1 0.139276557953758 1 0.0591371953487396 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94043239 chr7:94043219 nonsynonymous SNV 0.997 3 1 hm5C_associated_SNPs_25701 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_26325 DeepMRMD:1;iRNA_m5C:0.999536712157815 26326 chr13 111155774 111155774 1 + G C LIHC 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACTCGGGCGGTGGGCGACAGAGGCCCCA < 41bp 1 0.241706381691861 1 0.474609464406967 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155774 nonsynonymous SNV 0.002 5 17 hm5C_associated_SNPs_25702 0 0 0 0 2 Cytosol 1 0.500231644015106 1 0.999536711969788 hm5C_site_26326 DeepMRMD:1;iRNA_m5C:0.999536711969788 26327 chr1 32680499 32680499 1 + A G LIHC 32680487 - 32680467 32680507 41 TTGCTTCTTGGCTGAATGGTCTGCTGGGGTCTGGCATAGAA TTGCTTCTCGGCTGAATGGTCTGCTGGGGTCTGGCATAGAA < 41bp 1 0.525264822502074 1 0.272576093673706 experiment 0.949470354995853 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32680487 chr1:32680499 synonymous SNV . 0 9 hm5C_associated_SNPs_25703 0 0 1 0 0 cytosol 1 0.500231643923363 1 0.999536712153275 hm5C_site_26327 DeepMRMD:1;iRNA_m5C:0.999536712153275 26328 chr14 105858084 105858084 1 + G A LIHC 105858083 + 105858063 105858103 41 CCCTCCTCCCCGTCGGTGAGCGGAGGCCTGTCCTCCCCCAG CCCTCCTCCCCGTCGGTGAGCAGAGGCCTGTCCTCCCCCAG < 41bp 1 0.577727907258478 1 0.817995190620422 experiment 0.844544185483044 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control PACS2 ENSG00000179364 CDS Human protein_coding chr14:105858083 chr14:105858084 nonsynonymous SNV 0.978 2 22 hm5C_associated_SNPs_25704 0 0 0 0 1 Cytosol 1 0.500231643921092 0.364009618759156 0.999536712157815 hm5C_site_26328 DeepMRMD:0.364009618759156;iRNA_m5C:0.999536712157815 26329 chr17 4856369 4856369 1 + A G LIHC 4856386 + 4856366 4856406 41 AACATCAACAATACTCTGGGCCCTGCTCTGCTGCAAAAGGC AACGTCAACAATACTCTGGGCCCTGCTCTGCTGCAAAAGGC < 41bp 1 0.0729047808846899 1 0.0587864220142365 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856386 chr17:4856369 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_25705 0 0 1 0 1 nucleus 1 0.500231643933463 1 0.999536712133074 hm5C_site_26329 DeepMRMD:1;iRNA_m5C:0.999536712133074 26330 chr19 11134207 11134207 1 + A G LIHC 11134199 + 11134179 11134219 41 CTTGGGGGCTTCCAGGTGGACCTGAATGAGGAGGAAACCAT CTTGGGGGCTTCCAGGTGGACCTGAATGGGGAGGAAACCAT < 41bp 1 0.296953875449185 1 0.0979980528354645 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11134199 chr19:11134207 nonsynonymous SNV 0.998 3 29 hm5C_associated_SNPs_25706 0 0 1 0 1 Nucleus 1 0.500231643921084 1 0.999536712157833 hm5C_site_26330 DeepMRMD:1;iRNA_m5C:0.999536712157833 26331 chr1 27269167 27269167 1 + A G LIHC 27269155 + 27269135 27269175 41 CCCTGATTGTAAGCAGGATACTGAGGAAGATGAGGAGGAAG CCCTGATTGTAAGCAGGATACTGAGGAAGATGGGGAGGAAG < 41bp 1 0.587806736846 1 0.202516466379166 experiment 0.824386526308001 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUDC ENSG00000090273 CDS Human protein_coding chr1:27269155 chr1:27269167 nonsynonymous SNV 0.858 1 33 hm5C_associated_SNPs_25707 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26331 DeepMRMD:1;iRNA_m5C:0.999536712157815 26332 chr19 12902864 12902864 1 + C T LIHC 12902850 + 12902830 12902870 41 TCGCCTCTTCGGAGCTGGAACGCCTGATTGTCCCCAACAGC TCGCCTCTTCGGAGCTGGAACGCCTGATTGTCCCTAACAGC < 41bp 1 0.411920884393949 1 0.150790572166443 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control JUNB ENSG00000171223 CDS Human protein_coding chr19:12902850 chr19:12902864 synonymous SNV . 0 35 hm5C_associated_SNPs_25708 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26332 DeepMRMD:1;iRNA_m5C:0.999536712157815 26333 chr19 15222216 15222216 1 + T C LIHC 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCCGAGGACCTGTACCCCGATATCAATGT < 41bp 1 0.0531692098344624 1 0.0272065103054047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222216 synonymous SNV . 0 15 hm5C_associated_SNPs_25709 0 0 0 0 2 exosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_26333 DeepMRMD:1;iRNA_m5C:0.99953671215781 26334 chr12 123875311 123875311 1 + C T LIHC 123875303 + 123875283 123875323 41 AAGTCAAATGCCAGGGGAAACCATTAGCCGGAATCTACAGG AAGTCAAATGCCAGGGGAAACCATTAGCTGGAATCTACAGG < 41bp 1 0.0553792936996854 1 0.0623107254505157 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123875303 chr12:123875311 nonsynonymous SNV . 0 29 hm5C_associated_SNPs_25710 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26334 DeepMRMD:1;iRNA_m5C:0.999536712157815 26335 chr12 123875311 123875311 1 + C T LIHC 123875304 + 123875284 123875324 41 AGTCAAATGCCAGGGGAAACCATTAGCCGGAATCTACAGGA AGTCAAATGCCAGGGGAAACCATTAGCTGGAATCTACAGGA < 41bp 1 0.631301958502848 1 0.468868792057037 experiment 0.737396082994304 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123875304 chr12:123875311 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_25711 0 0 0 0 1 Cytosol 1 0.500231476314834 1 0.999537047370333 hm5C_site_26335 DeepMRMD:1;iRNA_m5C:0.999537047370333 26336 chr3 179478906 179478906 1 + A G LIHC 179478903 + 179478883 179478923 41 CCTGTTGTGCTCTGTAGCATCAGACATCGATGAGTCATCAG CCTGTTGTGCTCTGTAGCATCAGGCATCGATGAGTCATCAG < 41bp 1 0.568503819526211 1 0.74445629119873 experiment 0.862992360947579 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179478903 chr3:179478906 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_25714 0 0 1 0 1 Ribosome 1 0.500231629740103 0.51108741760254 0.999536740519794 hm5C_site_26336 DeepMRMD:0.51108741760254;iRNA_m5C:0.999536740519794 26337 chr11 68822741 68822741 1 + C A LIHC 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCACTGGGA < 41bp 1 0.390504066612155 1 0.082521378993988 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822741 nonsynonymous SNV 0.028 1 35 hm5C_associated_SNPs_25715 0 0 0 0 2 chromatin 1 0.500231643921107 1 0.999536712157787 hm5C_site_26337 DeepMRMD:1;iRNA_m5C:0.999536712157787 26338 chr11 94599276 94599276 1 + A G LIHC 94599284 + 94599264 94599304 41 CAGACCTCTCTTACCAGCAGCCAGCTGGCTGAGGAAAAGAA CAGACCTCTCTTGCCAGCAGCCAGCTGGCTGAGGAAAAGAA < 41bp 1 0.0385683011105878 1 0.161795824766159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94599284 chr11:94599276 nonsynonymous SNV 0.994 2 13 hm5C_associated_SNPs_25716 0 0 1 0 1 chromatin 1 0.500232065574664 1 0.999535868850671 hm5C_site_26338 DeepMRMD:1;iRNA_m5C:0.999535868850671 26339 chr11 94599276 94599276 1 + A G LIHC 94599292 + 94599272 94599312 41 TCTTACCAGCAGCCAGCTGGCTGAGGAAAAGAAGGAAGAGA TCTTGCCAGCAGCCAGCTGGCTGAGGAAAAGAAGGAAGAGA < 41bp 1 0.548608805339603 1 0.474799007177353 experiment 0.902782389320794 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94599292 chr11:94599276 nonsynonymous SNV 0.994 2 5 hm5C_associated_SNPs_25717 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_26339 DeepMRMD:1;iRNA_m5C:0.999536712157815 26340 chr12 57604994 57604994 1 + T C LIHC 57604984 + 57604964 57605004 41 TGCTCTGGCTACTGTGAGAACTTTGGCACATGCCAGATGGC TGCTCTGGCTACTGTGAGAACTTTGGCACACGCCAGATGGC < 41bp 1 0.0673438463026827 1 0.208362340927124 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604984 chr12:57604994 nonsynonymous SNV 0.831 2 31 hm5C_associated_SNPs_25718 0 0 1 0 1 Exosome 1 0.500278004898026 1 0.999443990203949 hm5C_site_26340 DeepMRMD:1;iRNA_m5C:0.999443990203949 26341 chr1 182848473 182848473 1 + G A LIHC 182848482 + 182848462 182848502 41 TAGGAGGAATTGGCCAATTTCTGGCCAAAGCAATTGAACCT TAGGAGGAATTAGCCAATTTCTGGCCAAAGCAATTGAACCT < 41bp 1 0.653784118533914 1 0.717533349990845 experiment 0.692431762932171 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182848482 chr1:182848473 nonsynonymous SNV 0.997 2 12 hm5C_associated_SNPs_25719 0 0 1 0 2 Cytosol 1 0.500225201143491 0.56493330001831 0.999549597713018 hm5C_site_26341 DeepMRMD:0.56493330001831;iRNA_m5C:0.999549597713018 26342 chr22 46611213 46611213 1 + G T LIHC 46611227 + 46611207 46611247 41 GTCCACGCGTGTGAAGGCTGCAAGGTAGAGGGGAGCTGGAA GTCCACTCGTGTGAAGGCTGCAAGGTAGAGGGGAGCTGGAA < 41bp 1 0.651453635595447 1 0.330257624387741 experiment 0.697092728809106 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPARA ENSG00000186951 CDS Human protein_coding chr22:46611227 chr22:46611213 nonsynonymous SNV 0.928 4 7 hm5C_associated_SNPs_25720 0 0 1 0 1 chromatin 1 0.500231643921111 1 0.999536712157778 hm5C_site_26342 DeepMRMD:1;iRNA_m5C:0.999536712157778 26343 chr2 39009010 39009010 1 + A G LIHC 39009029 + 39009009 39009049 41 AAGGACATCTTACAGCTTCCCAATGAGAGGCCAGGAAGTGT AGGGACATCTTACAGCTTCCCAATGAGAGGCCAGGAAGTGT < 41bp 1 0.26334754243618 1 0.289102971553802 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39009029 chr2:39009010 synonymous SNV . 0 2 hm5C_associated_SNPs_25721 0 0 1 0 0 Ribosome 1 0.500231643917653 1 0.999536712164695 hm5C_site_26343 DeepMRMD:1;iRNA_m5C:0.999536712164695 26344 chr6 151672275 151672275 1 + T C LIHC 151672255 + 151672235 151672275 41 TACCATTATTGAAGAAAGGTCTCCTTCTTGGATATCTGCTT TACCATTATTGAAGAAAGGTCTCCTTCTTGGATATCTGCTC < 41bp 1 0.168237049451102 1 0.221209019422531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151672255 chr6:151672275 nonsynonymous SNV 0.874 2 41 hm5C_associated_SNPs_25722 0 0 1 0 0 Ribosome 1 0.500231643920971 1 0.999536712158058 hm5C_site_26344 DeepMRMD:1;iRNA_m5C:0.999536712158058 26345 chr5 82833370 82833370 1 + A G LIHC 82833367 + 82833347 82833387 41 GAATTTGAAAGTGGAACAGCCAAAAAAGGGGCAGAATCAGT GAATTTGAAAGTGGAACAGCCAAGAAAGGGGCAGAATCAGT < 41bp 1 0.3515269862092 1 0.392086207866669 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82833367 chr5:82833370 synonymous SNV . 0 24 hm5C_associated_SNPs_25724 0 0 1 0 0 Ribosome 1 0.500231643918041 1 0.999536712163918 hm5C_site_26345 DeepMRMD:1;iRNA_m5C:0.999536712163918 26346 chr22 38470994 38470994 1 + C T LIHC 38470992 + 38470972 38471012 41 GAGGTAGACCTGGCGCACACCACATTGGCCTATGGCCTCAA GAGGTAGACCTGGCGCACACCATATTGGCCTATGGCCTCAA < 41bp 1 0.252822157803848 1 0.447292655706406 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PICK1 ENSG00000100151 CDS Human protein_coding chr22:38470992 chr22:38470994 nonsynonymous SNV 0.126 1 23 hm5C_associated_SNPs_25725 0 0 1 0 0 Ribosome 1 0.50023164155486 1 0.99953671689028 hm5C_site_26346 DeepMRMD:1;iRNA_m5C:0.99953671689028 26347 chr10 75871688 75871688 1 + G A LIHC 75871668 + 75871648 75871688 41 CTTCCCGCCATCGACAAAGCCGGGCATCCCAGCCGCTGAGG CTTCCCGCCATCGACAAAGCCGGGCATCCCAGCCGCTGAGA < 41bp 1 0.48045024452835 1 0.742071509361267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871668 chr10:75871688 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_25726 0 0 1 0 1 Nucleus 1 0.500230212398912 0.515856981277466 0.999539575202175 hm5C_site_26347 DeepMRMD:0.515856981277466;iRNA_m5C:0.999539575202175 26348 chr15 36989565 36989565 1 + T C LIHC 36989549 + 36989529 36989569 41 TTGGTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTA TTGGTCATGAGCATGAGGTCCTGCTGAGAGACTTGCCTCTA < 41bp 1 0.615077207505823 1 0.0928383767604828 experiment 0.769845584988355 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989549 chr15:36989565 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_25727 0 0 0 0 2 Cytosol 1 0.500231643843124 1 0.999536712313753 hm5C_site_26348 DeepMRMD:1;iRNA_m5C:0.999536712313753 26349 chr15 36989565 36989565 1 + T C LIHC 36989552 + 36989532 36989572 41 GTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTAGAG GTCATGAGCATGAGGTCCTGCTGAGAGACTTGCCTCTAGAG < 41bp 1 0.589259468461454 1 0.330600678920746 experiment 0.821481063077093 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989552 chr15:36989565 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_25728 0 0 0 0 2 Cytosol 1 0.500236481968049 1 0.999527036063901 hm5C_site_26349 DeepMRMD:1;iRNA_m5C:0.999527036063901 26350 chr15 36989565 36989565 1 + T C LIHC 36989560 + 36989540 36989580 41 CATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCT CATGAGGTCCTGCTGAGAGACTTGCCTCTAGAGAAAAACCT < 41bp 1 0.185576286050016 1 0.127815186977386 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989560 chr15:36989565 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_25729 0 0 0 0 2 Cytosol 1 0.500231643961054 1 0.999536712077892 hm5C_site_26350 DeepMRMD:1;iRNA_m5C:0.999536712077892 26351 chr15 36989565 36989565 1 + T C LIHC 36989564 + 36989544 36989584 41 AGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCTGTCC AGGTCCTGCTGAGAGACTTGCCTCTAGAGAAAAACCTGTCC < 41bp 1 0.0689591422738961 1 0.0263063907623291 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989564 chr15:36989565 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_25730 0 0 0 0 2 Cytosol 1 0.500231643922997 1 0.999536712154007 hm5C_site_26351 DeepMRMD:1;iRNA_m5C:0.999536712154007 26352 chr15 36989565 36989565 1 + T C LIHC 36989578 + 36989558 36989598 41 GACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA GACTTGCCTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA < 41bp 1 0.0974140400007916 1 0.0868496298789978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989578 chr15:36989565 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_25731 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26352 DeepMRMD:1;iRNA_m5C:0.999536712157815 26353 chr15 36989565 36989565 1 + T C LIHC 36989579 + 36989559 36989599 41 ACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT ACTTGCCTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT < 41bp 1 0.252422104591837 1 0.0448028445243835 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989579 chr15:36989565 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_25732 0 0 0 0 2 Cytosol 1 0.500231630284234 1 0.999536739431532 hm5C_site_26353 DeepMRMD:1;iRNA_m5C:0.999536739431532 26354 chr15 36989565 36989565 1 + T C LIHC 36989584 + 36989564 36989604 41 CTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC CCTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC < 41bp 1 0.123156559687232 1 0.0600318312644958 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989584 chr15:36989565 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_25733 0 0 0 0 2 Cytosol 1 0.500231644379959 1 0.999536711240081 hm5C_site_26354 DeepMRMD:1;iRNA_m5C:0.999536711240081 26355 chr16 8735035 8735035 1 + T C LIHC 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGACGACCTCCGCACAGGTGTGTGTTTC < 41bp 1 0.422515843557154 1 0.844781875610352 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735035 nonsynonymous SNV 0.954 1 24 hm5C_associated_SNPs_25734 0 0 1 0 2 Cytosol 1 0.500231329947339 0.310436248779296 0.999537340105322 hm5C_site_26355 DeepMRMD:0.310436248779296;iRNA_m5C:0.999537340105322 26356 chr3 184037534 184037534 1 + C G LIHC 184037529 + 184037509 184037549 41 CAGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAA CAGTTTCCCACTGGCGTGGCCCCCAGCCCAGTTTTGATGAA < 41bp 1 0.487758140511241 1 0.20311576128006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037529 chr3:184037534 nonsynonymous SNV 0.972 0 26 hm5C_associated_SNPs_25735 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26356 DeepMRMD:1;iRNA_m5C:0.999536712157815 26357 chr3 184037534 184037534 1 + C G LIHC 184037530 + 184037510 184037550 41 AGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAAC AGTTTCCCACTGGCGTGGCCCCCAGCCCAGTTTTGATGAAC < 41bp 1 0.235341938802485 1 0.0806664228439331 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037530 chr3:184037534 nonsynonymous SNV 0.972 0 25 hm5C_associated_SNPs_25736 0 0 1 0 2 Nucleus 1 0.500231643942403 1 0.999536712115193 hm5C_site_26357 DeepMRMD:1;iRNA_m5C:0.999536712115193 26358 chr3 184037534 184037534 1 + C G LIHC 184037531 + 184037511 184037551 41 GTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACC GTTTCCCACTGGCGTGGCCCCCAGCCCAGTTTTGATGAACC < 41bp 1 0.161294729184044 1 0.350954204797745 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037531 chr3:184037534 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_25737 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26358 DeepMRMD:1;iRNA_m5C:0.999536712157815 26359 chr7 36445866 36445866 1 + T G LIHC 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCAGACCTCTGCTGTCAAATGCCTCGGCAACTCCAG < 41bp 1 0.537058396215402 1 0.436831593513489 experiment 0.925883207569196 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445866 synonymous SNV . 0 19 hm5C_associated_SNPs_25738 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26359 DeepMRMD:1;iRNA_m5C:0.999536712157815 26360 chr7 135272402 135272402 1 + T C LIHC 135272419 + 135272399 135272439 41 CCATTTCACTTAGAAGGGACCTGGAACACTTAATGCTTTTG CCACTTCACTTAGAAGGGACCTGGAACACTTAATGCTTTTG < 41bp 1 0.54430544301665 1 0.520798623561859 experiment 0.9113891139667 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135272419 chr7:135272402 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_25739 0 0 1 1 1 Cytosol 1 0.500231643877426 0.958402752876282 0.999536712245149 hm5C_site_26360 DeepMRMD:0.958402752876282;iRNA_m5C:0.999536712245149 26361 chr17 21319360 21319360 1 + C T LIHC 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGTGGG < 41bp 1 0.602353776911065 1 0.4724400639534 experiment 0.795292446177871 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319360 nonsynonymous SNV 0.361 5 38 hm5C_associated_SNPs_25740 0 0 0 0 0 unknown 1 0.500231689165656 1 0.999536621668689 hm5C_site_26361 DeepMRMD:1;iRNA_m5C:0.999536621668689 26362 chr17 57918655 57918655 1 + A G LIHC 57918672 + 57918652 57918692 41 TTGACTGTTGAATCTCATGGCAACACCAGTCGATGGGCTGT TTGGCTGTTGAATCTCATGGCAACACCAGTCGATGGGCTGT < 41bp 1 0.642575674389237 1 0.170100390911102 experiment 0.714848651221526 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control MIR21 ENSG00000199004 ncRNA_exonic Human other chr17:57918672 chr17:57918655 . . 0 4 hm5C_associated_SNPs_25741 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_26362 DeepMRMD:1;iRNA_m5C:0.999536712157815 26363 chr7 138944069 138944069 1 + A G LIHC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAGGGGGAAAAG < 41bp 1 0.511936583220759 1 0.654187023639679 experiment 0.976126833558483 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944069 synonymous SNV . 0 32 hm5C_associated_SNPs_25744 0 0 1 0 2 Cytosol 1 0.500231643921092 0.691625952720642 0.999536712157815 hm5C_site_26363 DeepMRMD:0.691625952720642;iRNA_m5C:0.999536712157815 26364 chr11 65347712 65347712 1 + T C LIHC 65347700 + 65347680 65347720 41 TGAGCTGAGCCTCACTCTTTCCGGGGTGCTGCTGCGGGAGG TGAGCTGAGCCTCACTCTTTCCGGGGTGCTGCCGCGGGAGG < 41bp 1 0.635399808416972 1 0.792819678783417 experiment 0.729200383166057 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65347700 chr11:65347712 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_25745 0 0 1 0 1 chromatin 1 0.500231643921093 0.414360642433166 0.999536712157815 hm5C_site_26364 DeepMRMD:0.414360642433166;iRNA_m5C:0.999536712157815 26365 chr11 45924665 45924665 1 + T C LIHC 45924677 + 45924657 45924697 41 TCCACGCCTGATGAACCCGACGTCCATTTCTCCAAGAAATT TCCACGCCCGATGAACCCGACGTCCATTTCTCCAAGAAATT < 41bp 1 0.0260784418373857 1 0.0462767779827118 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924677 chr11:45924665 synonymous SNV . 0 9 hm5C_associated_SNPs_25746 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921069 1 0.999536712157862 hm5C_site_26365 DeepMRMD:1;iRNA_m5C:0.999536712157862 26366 chr5 118484603 118484603 1 + A G LIHC 118484585 + 118484565 118484605 41 GGAAAAATTGATCTTGCATACATTTGGGAAGAATGGCCATT GGAAAAATTGATCTTGCATACATTTGGGAAGAATGGCCGTT < 41bp 1 0.0409569016780725 1 0.15932422876358 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DMXL1 ENSG00000172869 CDS Human protein_coding chr5:118484585 chr5:118484603 synonymous SNV . 0 39 hm5C_associated_SNPs_25747 0 0 1 0 0 Cytosol 1 0.500231643920943 1 0.999536712158114 hm5C_site_26366 DeepMRMD:1;iRNA_m5C:0.999536712158114 26367 chr2 216995635 216995635 1 + A G LIHC 216995625 + 216995605 216995645 41 CTATGGAAGTGATATAGTTCCTTTCTCTAAAGTGGATGAGG CTATGGAAGTGATATAGTTCCTTTCTCTAAGGTGGATGAGG < 41bp 1 0.0552462578189901 1 0.0216287076473236 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216995625 chr2:216995635 synonymous SNV . 0 31 hm5C_associated_SNPs_25748 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26367 DeepMRMD:1;iRNA_m5C:0.999536712157815 26368 chr2 216995635 216995635 1 + A G LIHC 216995648 + 216995628 216995668 41 TCTCTAAAGTGGATGAGGAACAAATGAAATATAAATCGGAG TCTCTAAGGTGGATGAGGAACAAATGAAATATAAATCGGAG < 41bp 1 0.391257752177113 1 0.473851203918457 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216995648 chr2:216995635 synonymous SNV . 0 8 hm5C_associated_SNPs_25749 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_26368 DeepMRMD:1;iRNA_m5C:0.999536712157815 26369 chr5 102343168 102343168 1 + A G LIHC 102343174 + 102343154 102343194 41 TCTGCAGAGTCTTCAGGGAGCAGTCCTCTGCCAGGCCAGTT TCTGCAGAGTCTTCGGGGAGCAGTCCTCTGCCAGGCCAGTT < 41bp 1 0.158071149814761 1 0.127884745597839 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102343174 chr5:102343168 synonymous SNV . 0 15 hm5C_associated_SNPs_25750 0 0 1 0 0 Ribosome 1 0.500231643921128 1 0.999536712157743 hm5C_site_26369 DeepMRMD:1;iRNA_m5C:0.999536712157743 26370 chr6 43471363 43471363 1 + G C LIHC 43471364 + 43471344 43471384 41 CAGGTCTGTGTCTGTAGGAGCGGTACCGGCTGGACTGCAAC CAGGTCTGTGTCTGTAGGACCGGTACCGGCTGGACTGCAAC < 41bp 1 0.499920433986196 1 0.362479150295258 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TJAP1 ENSG00000137221 CDS Human protein_coding chr6:43471364 chr6:43471363 nonsynonymous SNV 0.998 3 20 hm5C_associated_SNPs_25752 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_26370 DeepMRMD:1;iRNA_m5C:0.999536712157815 26371 chrX 107910381 107910381 1 + A G LIHC 107910384 + 107910364 107910404 41 TCAACCAGGCTTTGGAAACCCAGGACCCCCTGGACTTCCAG TCAACCAGGCTTTGGAAGCCCAGGACCCCCTGGACTTCCAG < 41bp 1 0.473012369048665 1 0.63249534368515 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107910384 chrX:107910381 nonsynonymous SNV 0.995 1 18 hm5C_associated_SNPs_25753 0 0 1 0 2 Ribosome 1 0.500231643921092 0.7350093126297 0.999536712157815 hm5C_site_26371 DeepMRMD:0.7350093126297;iRNA_m5C:0.999536712157815 26372 chr16 56872968 56872968 1 + A T LIHC 56872961 + 56872941 56872981 41 TTGACGAGTATCATAGTGGTCATATTGATAGAGCTTTTGAT TTGACGAGTATCATAGTGGTCATATTGTTAGAGCTTTTGAT < 41bp 1 0.0604699369919819 1 0.0839748978614807 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56872961 chr16:56872968 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_25754 0 0 1 0 1 Nucleus 1 0.500231843895831 1 0.999536312208338 hm5C_site_26372 DeepMRMD:1;iRNA_m5C:0.999536312208338 26373 chr10 45486412 45486412 1 + A G LIHC 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAGGACTGC < 41bp 1 0.0746169525604252 1 0.177373051643372 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486412 synonymous SNV . 0 35 hm5C_associated_SNPs_25755 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26373 DeepMRMD:1;iRNA_m5C:0.999536712157815 26374 chr5 179150758 179150758 1 + T A LIHC 179150759 + 179150739 179150779 41 CTTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA CTTCCTGTGTTCCTGGTTAACCTCTTCTGCTGTTCTGGAAA < 41bp 1 0.111511436859808 1 0.0360018610954285 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150759 chr5:179150758 nonsynonymous SNV 0.951 1 20 hm5C_associated_SNPs_25757 0 0 1 0 2 Nucleus 1 0.500231643921063 1 0.999536712157874 hm5C_site_26374 DeepMRMD:1;iRNA_m5C:0.999536712157874 26375 chr5 179150758 179150758 1 + T A LIHC 179150760 + 179150740 179150780 41 TTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAG TTCCTGTGTTCCTGGTTAACCTCTTCTGCTGTTCTGGAAAG < 41bp 1 0.297478020483802 1 0.144524693489075 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150760 chr5:179150758 nonsynonymous SNV 0.951 1 19 hm5C_associated_SNPs_25758 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26375 DeepMRMD:1;iRNA_m5C:0.999536712157815 26376 chr7 142458441 142458441 1 + G A LIHC 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTAGGGGCTACAACTGTGA < 41bp 1 0.303016519188194 1 0.0984964370727539 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458441 nonsynonymous SNV 0.121 5 25 hm5C_associated_SNPs_25762 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_26376 DeepMRMD:1;iRNA_m5C:0.999536712157816 26377 chr7 142458441 142458441 1 + G A LIHC 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTAGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.326127192871485 1 0.447760939598083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458441 nonsynonymous SNV 0.121 5 16 hm5C_associated_SNPs_25763 0 0 0 0 1 Cytosol 1 0.500231643921142 1 0.999536712157716 hm5C_site_26377 DeepMRMD:1;iRNA_m5C:0.999536712157716 26378 chr7 142458441 142458441 1 + G A LIHC 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTAGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.134995956199589 1 0.158316105604172 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458441 nonsynonymous SNV 0.121 5 13 hm5C_associated_SNPs_25764 0 0 0 0 1 Cytosol 1 0.500231643921091 1 0.999536712157819 hm5C_site_26378 DeepMRMD:1;iRNA_m5C:0.999536712157819 26379 chr7 142458441 142458441 1 + G A LIHC 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTAGGGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.370365211128717 1 0.231998294591904 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458441 nonsynonymous SNV 0.121 5 10 hm5C_associated_SNPs_25765 0 0 0 0 1 Cytosol 1 0.500231653828284 1 0.999536692343432 hm5C_site_26379 DeepMRMD:1;iRNA_m5C:0.999536692343432 26380 chr16 31487440 31487440 1 + C A LIHC 31487435 + 31487415 31487455 41 TCTTCGAGAAGGATGGAGCCCCCTTCTGCCCCGAGTGCTAC TCTTCGAGAAGGATGGAGCCCCCTTATGCCCCGAGTGCTAC < 41bp 1 0.126944656244945 1 0.045171707868576 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31487435 chr16:31487440 nonsynonymous SNV 0.977 3 26 hm5C_associated_SNPs_25767 0 0 0 0 1 Cytosol 1 0.500231643958911 1 0.999536712082179 hm5C_site_26380 DeepMRMD:1;iRNA_m5C:0.999536712082179 26381 chr6 42957352 42957352 1 + C T LIHC 42957366 + 42957346 42957386 41 CAGGAGCCCCCCAAGGTTGCCAAATGCACAGCCAAGCCTAG CAGGAGTCCCCCAAGGTTGCCAAATGCACAGCCAAGCCTAG < 41bp 1 0.216097504952095 1 0.780898451805115 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42957366 chr6:42957352 nonsynonymous SNV 0.985 0 7 hm5C_associated_SNPs_25768 0 0 1 0 2 Ribosome 1 0.500231643921112 0.43820309638977 0.999536712157777 hm5C_site_26381 DeepMRMD:0.43820309638977;iRNA_m5C:0.999536712157777 26382 chr7 142460310 142460310 1 + G A LIHC 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTA < 41bp 1 0.421314848353345 1 0.424307852983475 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460310 synonymous SNV . 0 41 hm5C_associated_SNPs_25769 0 0 0 0 1 Cytosol 1 0.500231643902381 1 0.999536712195237 hm5C_site_26382 DeepMRMD:1;iRNA_m5C:0.999536712195237 26383 chr7 142460310 142460310 1 + G A LIHC 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTAG < 41bp 1 0.466902484904921 1 0.451462715864182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460310 synonymous SNV . 0 40 hm5C_associated_SNPs_25770 0 0 0 0 1 Cytosol 1 0.500231646034359 1 0.999536707931282 hm5C_site_26383 DeepMRMD:1;iRNA_m5C:0.999536707931282 26384 chr7 142460310 142460310 1 + G A LIHC 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTAGATGC < 41bp 1 0.359308187159777 1 0.298450291156769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460310 synonymous SNV . 0 36 hm5C_associated_SNPs_25771 0 0 0 0 1 Cytosol 1 0.500252569142183 1 0.999494861715634 hm5C_site_26384 DeepMRMD:1;iRNA_m5C:0.999494861715634 26385 chr7 142460310 142460310 1 + G A LIHC 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGCCTAGATGCTCCT < 41bp 1 0.657356420955035 1 0.144462913274765 experiment 0.685287158089931 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460310 synonymous SNV . 0 32 hm5C_associated_SNPs_25772 0 0 0 0 1 Cytosol 1 0.500232394021842 1 0.999535211956317 hm5C_site_26385 DeepMRMD:1;iRNA_m5C:0.999535211956317 26386 chr7 142460310 142460310 1 + G A LIHC 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCCTAGATGCTCCTGTG < 41bp 1 0.264680609506269 1 0.132820010185242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460310 synonymous SNV . 0 29 hm5C_associated_SNPs_25773 0 0 0 0 1 Cytosol 1 0.500231643923692 1 0.999536712152616 hm5C_site_26386 DeepMRMD:1;iRNA_m5C:0.999536712152616 26387 chr7 142460310 142460310 1 + G A LIHC 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTAGATGCTCCTGTGCTGAG < 41bp 1 0.0885184704414073 1 0.110123515129089 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460310 synonymous SNV . 0 24 hm5C_associated_SNPs_25774 0 0 0 0 1 Cytosol 1 0.500232440712779 1 0.999535118574441 hm5C_site_26387 DeepMRMD:1;iRNA_m5C:0.999535118574441 26388 chr7 142460310 142460310 1 + G A LIHC 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTAGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.425831579342952 1 0.278934478759766 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460310 synonymous SNV . 0 16 hm5C_associated_SNPs_25775 0 0 0 0 1 Cytosol 1 0.500231643923312 1 0.999536712153375 hm5C_site_26388 DeepMRMD:1;iRNA_m5C:0.999536712153375 26389 chr7 142460310 142460310 1 + G A LIHC 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTAGATGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.173992860836207 1 0.134485393762589 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460310 synonymous SNV . 0 14 hm5C_associated_SNPs_25776 0 0 0 0 1 Cytosol 1 0.500231643925682 1 0.999536712148635 hm5C_site_26389 DeepMRMD:1;iRNA_m5C:0.999536712148635 26390 chr7 142460310 142460310 1 + G A LIHC 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTAGATGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.387339826615509 1 0.210872024297714 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460310 synonymous SNV . 0 13 hm5C_associated_SNPs_25777 0 0 0 0 1 Cytosol 1 0.50023161148089 1 0.999536777038221 hm5C_site_26390 DeepMRMD:1;iRNA_m5C:0.999536777038221 26391 chr7 142460310 142460310 1 + G A LIHC 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTAGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.464234956095268 1 0.0647589862346649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460310 synonymous SNV . 0 8 hm5C_associated_SNPs_25778 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_26391 DeepMRMD:1;iRNA_m5C:0.999536712157816 26392 chr7 142460310 142460310 1 + G A LIHC 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTAGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.347822809040691 1 0.293125689029694 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460310 synonymous SNV . 0 3 hm5C_associated_SNPs_25779 0 0 0 0 1 Cytosol 1 0.500231643921079 1 0.999536712157842 hm5C_site_26392 DeepMRMD:1;iRNA_m5C:0.999536712157842 26393 chr7 142460310 142460310 1 + G A LIHC 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TAGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.49319816710671 1 0.701444149017334 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460310 synonymous SNV . 0 2 hm5C_associated_SNPs_25780 0 0 0 0 1 Cytosol 1 0.500231646567517 0.597111701965332 0.999536706864967 hm5C_site_26393 DeepMRMD:0.597111701965332;iRNA_m5C:0.999536706864967 26394 chr8 142176419 142176419 1 + C A LIHC 142176432 + 142176412 142176452 41 TGCCATGCCTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC TGCCATGACTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC < 41bp 1 0.495718369640563 1 0.843541324138641 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142176432 chr8:142176419 nonsynonymous SNV 0.098 0 8 hm5C_associated_SNPs_25781 0 0 0 0 1 Nucleus 1 0.50023164392216 0.312917351722718 0.99953671215568 hm5C_site_26394 DeepMRMD:0.312917351722718;iRNA_m5C:0.99953671215568 26395 chr17 48156884 48156884 1 + T C LIHC 48156868 + 48156848 48156888 41 ATCCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCT ATCCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCCGGCT < 41bp 1 0.0751268650373582 1 0.244636505842209 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156868 chr17:48156884 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_25782 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26395 DeepMRMD:1;iRNA_m5C:0.999536712157815 26396 chr17 48156884 48156884 1 + T C LIHC 48156870 + 48156850 48156890 41 CCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC CCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCCGGCTGC < 41bp 1 0.128816871245152 1 0.154922306537628 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156870 chr17:48156884 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_25783 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26396 DeepMRMD:1;iRNA_m5C:0.999536712157815 26397 chr1 225284905 225284905 1 + A G LIHC 225284922 + 225284902 225284942 41 TTTATCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAGG TTTGTCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAGG < 41bp 1 0.0246021273381675 1 0.0378066599369049 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAH14 ENSG00000185842 CDS Human protein_coding chr1:225284922 chr1:225284905 nonsynonymous SNV 0.991 1 4 hm5C_associated_SNPs_25784 0 0 1 0 2 Cytosol 1 0.50023160557646 1 0.99953678884708 hm5C_site_26397 DeepMRMD:1;iRNA_m5C:0.99953678884708 26398 chr2 231931711 231931711 1 + C T LIHC 231931696 + 231931676 231931716 41 GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATCGT GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGTATCGT < 41bp 1 0.531048061806363 1 0.0557637214660645 experiment 0.937903876387273 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931696 chr2:231931711 synonymous SNV . 0 36 hm5C_associated_SNPs_25785 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26398 DeepMRMD:1;iRNA_m5C:0.999536712157815 26399 chr7 930603 930603 1 + T G LIHC 930607 + 930587 930627 41 GTATCATTTTCTGCACTCAGCGGACGGGGAGGGCTGTGCCA GTATCATTTTCTGCACGCAGCGGACGGGGAGGGCTGTGCCA < 41bp 1 0.380709907013035 1 0.673163652420044 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GET4 ENSG00000239857 CDS Human protein_coding chr7:930607 chr7:930603 nonsynonymous SNV 0.758 2 17 hm5C_associated_SNPs_25786 0 0 1 0 1 Cytosol 1 0.500231643921096 0.653672695159912 0.999536712157809 hm5C_site_26399 DeepMRMD:0.653672695159912;iRNA_m5C:0.999536712157809 26400 chr10 102748801 102748801 1 + G T LIHC 102748820 + 102748800 102748840 41 TGCCTACCCTTACTCTACCCCGAGGAACGACCTGCTTACCC TTCCTACCCTTACTCTACCCCGAGGAACGACCTGCTTACCC < 41bp 1 0.679326811025599 1 0.899545192718506 experiment 0.641346377948802 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TWNK ENSG00000107815 CDS Human protein_coding chr10:102748820 chr10:102748801 synonymous SNV . 0 2 hm5C_associated_SNPs_25787 0 0 1 0 0 unknown 1 0.500231643921092 0.200909614562988 0.999536712157815 hm5C_site_26400 DeepMRMD:0.200909614562988;iRNA_m5C:0.999536712157815 26401 chr6 144875994 144875994 1 + C A LIHC 144875991 + 144875971 144876011 41 TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA TCTATATTCTTCAGCAAGCCCGAAGGGATCCACTCACCAAA < 41bp 1 0.182144976266788 1 0.533278107643127 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144875991 chr6:144875994 synonymous SNV . 0 24 hm5C_associated_SNPs_25788 0 0 1 0 1 Nucleus 1 0.500231643921073 0.933443784713746 0.999536712157854 hm5C_site_26401 DeepMRMD:0.933443784713746;iRNA_m5C:0.999536712157854 26402 chr3 9776024 9776024 1 + A C LIHC 9776023 + 9776003 9776043 41 AGCACAAGAAAAAGGGGCGCCAGTCACGCCCAGCCAACAAG AGCACAAGAAAAAGGGGCGCCCGTCACGCCCAGCCAACAAG < 41bp 1 0.0463444716340948 1 0.200817108154297 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9776023 chr3:9776024 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_25789 0 0 0 0 0 Nucleus 1 0.500231643925294 1 0.999536712149412 hm5C_site_26402 DeepMRMD:1;iRNA_m5C:0.999536712149412 26403 chr9 96411461 96411461 1 + T A LIHC 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GCACCAACCGCAAGCGGGTCCACAACGTCACCAACCTCGAG < 41bp 1 0.47942363846724 1 0.405287563800812 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411461 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_25790 0 0 1 0 1 chromatin 1 0.500155529106415 1 0.999688941787171 hm5C_site_26403 DeepMRMD:1;iRNA_m5C:0.999688941787171 26404 chr12 120878337 120878337 1 + A G LIHC 120878328 + 120878308 120878348 41 AATCCACTTCCAACTGGCTACGAAGATGAATAAAGAGAATC AATCCACTTCCAACTGGCTACGAAGATGAGTAAAGAGAATC < 41bp 1 0.366869113365044 1 0.330143451690674 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX6A1 ENSG00000111775 CDS Human protein_coding chr12:120878328 chr12:120878337 synonymous SNV . 0 30 hm5C_associated_SNPs_25791 0 0 1 0 1 Ribosome 1 0.500231142451024 1 0.999537715097953 hm5C_site_26404 DeepMRMD:1;iRNA_m5C:0.999537715097953 26405 chr17 79970118 79970118 1 + C T LIHC 79970130 + 79970110 79970150 41 TCACCCCTCCAAAAACAGTCCTGGACGACCACACGCAGACC TCACCCCTTCAAAAACAGTCCTGGACGACCACACGCAGACC < 41bp 1 0.687783666471438 1 0.654518842697144 experiment 0.624432667057125 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79970130 chr17:79970118 nonsynonymous SNV 0.027 4 9 hm5C_associated_SNPs_25792 0 0 1 0 3 Ribosome 1 0.500231644171477 0.690962314605712 0.999536711657046 hm5C_site_26405 DeepMRMD:0.690962314605712;iRNA_m5C:0.999536711657046 26406 chr19 14580184 14580184 1 + G T LIHC 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CATTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC < 41bp 1 0.0567589745647676 1 0.0837321877479553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580184 nonsynonymous SNV 0.370 1 3 hm5C_associated_SNPs_25793 0 0 1 0 1 Ribosome 1 0.500231643906108 1 0.999536712187784 hm5C_site_26406 DeepMRMD:1;iRNA_m5C:0.999536712187784 26407 chr19 14580184 14580184 1 + G T LIHC 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG ATTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG < 41bp 1 0.0212692195085179 1 0.0573485493659973 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580184 nonsynonymous SNV 0.370 1 2 hm5C_associated_SNPs_25794 0 0 1 0 1 Ribosome 1 0.500231643907855 1 0.99953671218429 hm5C_site_26407 DeepMRMD:1;iRNA_m5C:0.99953671218429 26408 chr1 160323960 160323960 1 + T G LIHC 160323975 + 160323955 160323995 41 TGCTGTCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCC TGCTGGCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCC < 41bp 1 0.285545405077149 1 0.0867100059986115 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160323975 chr1:160323960 nonsynonymous SNV 0.380 4 6 hm5C_associated_SNPs_25795 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921097 1 0.999536712157805 hm5C_site_26408 DeepMRMD:1;iRNA_m5C:0.999536712157805 26409 chr5 139060694 139060694 1 + G A LIHC 139060711 + 139060691 139060731 41 GCTGTGGCAGGTGCCGAAGCCCTCAATGGCCAGTCCGACTT GCTATGGCAGGTGCCGAAGCCCTCAATGGCCAGTCCGACTT < 41bp 1 0.513885650974874 1 0.321070969104767 experiment 0.972228698050252 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXXC5 ENSG00000171604 CDS Human protein_coding chr5:139060711 chr5:139060694 nonsynonymous SNV 0.980 2 4 hm5C_associated_SNPs_25796 0 0 1 0 0 Ribosome 1 0.50023164393758 1 0.99953671212484 hm5C_site_26409 DeepMRMD:1;iRNA_m5C:0.99953671212484 26410 chr12 3047308 3047308 1 + A T LIHC 3047297 + 3047277 3047317 41 CAGAACCATGACAGTTTGCTCTCAAGGTGGCAGAACAGAAC CAGAACCATGACAGTTTGCTCTCAAGGTGGCTGAACAGAAC < 41bp 1 0.616935376277058 1 0.743946850299835 experiment 0.766129247445883 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TULP3 ENSG00000078246 CDS Human protein_coding chr12:3047297 chr12:3047308 nonsynonymous SNV 0.888 4 32 hm5C_associated_SNPs_25797 0 0 1 0 1 Cytosol 1 0.500220707914738 0.51210629940033 0.999558584170525 hm5C_site_26410 DeepMRMD:0.51210629940033;iRNA_m5C:0.999558584170525 26411 chr11 118452209 118452209 1 + G A LIHC 118452203 + 118452183 118452223 41 ATTTTAGAAGATTTGGAGACCCTAAGGCTCTTCTCAAGAGT ATTTTAGAAGATTTGGAGACCCTAAGACTCTTCTCAAGAGT < 41bp 1 0.203939860111198 1 0.117706120014191 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARCN1 ENSG00000095139 CDS Human protein_coding chr11:118452203 chr11:118452209 synonymous SNV . 0 27 hm5C_associated_SNPs_25798 0 0 1 0 1 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_26411 DeepMRMD:1;iRNA_m5C:0.999536712157818 26412 chr20 60882773 60882773 1 + G C LIHC 60882762 + 60882742 60882782 41 AGCAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAG AGCAACTAGCCCGAGCCCCGCGCCCAGTTCCCGGAATGGAG < 41bp 1 0.281715934814791 1 0.399726033210754 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882762 chr20:60882773 nonsynonymous SNV 0.460 2 32 hm5C_associated_SNPs_25799 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26412 DeepMRMD:1;iRNA_m5C:0.999536712157815 26413 chr20 60882773 60882773 1 + G C LIHC 60882764 + 60882744 60882784 41 CAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAGCC CAACTAGCCCGAGCCCCGCGCCCAGTTCCCGGAATGGAGCC < 41bp 1 0.258085665650182 1 0.431479275226593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882764 chr20:60882773 nonsynonymous SNV 0.460 2 30 hm5C_associated_SNPs_25800 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26413 DeepMRMD:1;iRNA_m5C:0.999536712157815 26414 chr1 154960711 154960711 1 + A C LIHC 154960727 + 154960707 154960747 41 TCCAACCGCTTCACCCATGTCCTCACAGCAGGGGGCATCGG TCCACCCGCTTCACCCATGTCCTCACAGCAGGGGGCATCGG < 41bp 1 0.332225849847546 1 0.0359872281551361 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154960727 chr1:154960711 nonsynonymous SNV 0.979 0 5 hm5C_associated_SNPs_25801 0 0 1 0 0 Cytosol 1 0.500231682336113 1 0.999536635327775 hm5C_site_26414 DeepMRMD:1;iRNA_m5C:0.999536635327775 26415 chr3 172098773 172098773 1 + T C LIHC 172098759 + 172098739 172098779 41 GTGGATTTGTATTTCAGCACCTCGAGTAACACAGTTAGAAG GTGGATTTGTATTTCAGCACCTCGAGTAACACAGCTAGAAG < 41bp 1 0.562049723766827 1 0.716703236103058 experiment 0.875900552466346 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172098759 chr3:172098773 synonymous SNV . 0 35 hm5C_associated_SNPs_25802 0 0 1 0 1 Nucleus 1 0.500231789332581 0.566593527793884 0.999536421334839 hm5C_site_26415 DeepMRMD:0.566593527793884;iRNA_m5C:0.999536421334839 26416 chr3 172098773 172098773 1 + T C LIHC 172098770 + 172098750 172098790 41 TTTCAGCACCTCGAGTAACACAGTTAGAAGGAAATTCATGT TTTCAGCACCTCGAGTAACACAGCTAGAAGGAAATTCATGT < 41bp 1 0.219243280622569 1 0.480669736862183 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172098770 chr3:172098773 synonymous SNV . 0 24 hm5C_associated_SNPs_25803 0 0 1 0 1 Nucleus 1 0.500231643921101 1 0.999536712157797 hm5C_site_26416 DeepMRMD:1;iRNA_m5C:0.999536712157797 26417 chr2 27449453 27449453 1 + A G LIHC 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTGGCCAGTAAGGCCGCAGGTTATCCACTGGCTT < 41bp 1 0.260059835545723 1 0.123455911874771 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449453 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_25804 0 0 1 0 2 Exosome 1 0.50023164375133 1 0.999536712497341 hm5C_site_26417 DeepMRMD:1;iRNA_m5C:0.999536712497341 26418 chr2 85133149 85133149 1 + A G LIHC 85133155 + 85133135 85133175 41 TAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCCA TAAGAAAATGGCAGGCAAACCAGACATGGGGGAAATCGCCA < 41bp 1 0.4563068353025 1 0.229987591505051 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMSB10 ENSG00000034510 CDS Human protein_coding chr2:85133155 chr2:85133149 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_25805 0 0 1 0 1 Ribosome 1 0.500231644095162 1 0.999536711809677 hm5C_site_26418 DeepMRMD:1;iRNA_m5C:0.999536711809677 26419 chr6 80741219 80741219 1 + G T LIHC 80741213 + 80741193 80741233 41 TCTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT TCTTCTTCAGCAAATGAATGCATTTCTGTTAAAGGAAGAAT < 41bp 1 0.0285053970717785 1 0.0967293381690979 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTK ENSG00000112742 CDS Human protein_coding chr6:80741213 chr6:80741219 synonymous SNV . 0 27 hm5C_associated_SNPs_25806 0 0 1 0 2 chromatin 1 0.500231643866379 1 0.999536712267241 hm5C_site_26419 DeepMRMD:1;iRNA_m5C:0.999536712267241 26420 chr11 34969131 34969131 1 + A G LIHC 34969143 + 34969123 34969163 41 AAGTGATGATGGAATCTTGGCCAAAATCGTGGTAAGTTTTT AAGTGATGGTGGAATCTTGGCCAAAATCGTGGTAAGTTTTT < 41bp 1 0.205219330664924 1 0.298294544219971 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969143 chr11:34969131 nonsynonymous SNV 0.929 4 9 hm5C_associated_SNPs_25807 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26420 DeepMRMD:1;iRNA_m5C:0.999536712157815 26421 chr15 99491869 99491869 1 + C G LIHC 99491873 + 99491853 99491893 41 ACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATG ACCAGGGCTTGTCCAAGGAGCAAGTCCTTCGCTTCGTCATG < 41bp 1 0.220706506997425 1 0.089641809463501 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491873 chr15:99491869 nonsynonymous SNV 0.997 5 17 hm5C_associated_SNPs_25810 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_26421 DeepMRMD:1;iRNA_m5C:0.999536712157815 26422 chr16 2732726 2732726 1 + G A LIHC 2732745 + 2732725 2732765 41 GGCAGACCCTGTGCCGGGACCCGAAATCCTTCCTGTACCGC GACAGACCCTGTGCCGGGACCCGAAATCCTTCCTGTACCGC < 41bp 1 0.481993528134943 1 0.316028654575348 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2732745 chr16:2732726 synonymous SNV . 0 2 hm5C_associated_SNPs_25811 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26422 DeepMRMD:1;iRNA_m5C:0.999536712157815 26423 chr16 67917569 67917569 1 + T C LIHC 67917568 + 67917548 67917588 41 ACCCTGCCCGCTCTCCCAGCCTGTGCTCCTTTCCCTCATCC ACCCTGCCCGCTCTCCCAGCCCGTGCTCCTTTCCCTCATCC < 41bp 1 0.147857486754482 1 0.255687654018402 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917568 chr16:67917569 synonymous SNV . 0 22 hm5C_associated_SNPs_25812 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26423 DeepMRMD:1;iRNA_m5C:0.999536712157815 26424 chr20 37168585 37168585 1 + A G LIHC 37168578 + 37168558 37168598 41 TCTGTGTCTGGCTGACAGAGCACCCTGATATGCTTGATGAA TCTGTGTCTGGCTGACAGAGCACCCTGGTATGCTTGATGAA < 41bp 1 0.183495026601548 1 0.134437590837479 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37168578 chr20:37168585 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_25813 0 0 1 0 1 Nucleus 1 0.500231569760788 1 0.999536860478424 hm5C_site_26424 DeepMRMD:1;iRNA_m5C:0.999536860478424 26425 chr21 47864704 47864704 1 + A G LIHC 47864706 + 47864686 47864726 41 ATTCACCATTTAGAAGTGATCCAGCAAAGATTGGGAGGGGT ATTCACCATTTAGAAGTGGTCCAGCAAAGATTGGGAGGGGT < 41bp 1 0.0386767103236338 1 0.177810996770859 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47864706 chr21:47864704 nonsynonymous SNV 0.856 0 19 hm5C_associated_SNPs_25814 0 0 1 0 2 Exosome 1 0.500232442350735 1 0.99953511529853 hm5C_site_26425 DeepMRMD:1;iRNA_m5C:0.99953511529853 26426 chr1 26136290 26136290 1 + G T LIHC 26136270 + 26136250 26136290 41 ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCG ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCT < 41bp 1 0.106253087332883 1 0.0402098894119263 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136270 chr1:26136290 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_25815 0 0 1 0 1 unknown 1 0.500230966606616 1 0.999538066786769 hm5C_site_26426 DeepMRMD:1;iRNA_m5C:0.999538066786769 26427 chr1 26136290 26136290 1 + G T LIHC 26136273 + 26136253 26136293 41 ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCT ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCTGCT < 41bp 1 0.106304948217803 1 0.0725802183151245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136273 chr1:26136290 nonsynonymous SNV 0.998 2 38 hm5C_associated_SNPs_25816 0 0 1 0 1 unknown 1 0.500231654698955 1 0.999536690602091 hm5C_site_26427 DeepMRMD:1;iRNA_m5C:0.999536690602091 26428 chr1 26136290 26136290 1 + G T LIHC 26136274 + 26136254 26136294 41 TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTC TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCTGCTC < 41bp 1 0.473245073869377 1 0.0473699569702148 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136274 chr1:26136290 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_25817 0 0 1 0 1 unknown 1 0.500231641296491 1 0.999536717407019 hm5C_site_26428 DeepMRMD:1;iRNA_m5C:0.999536717407019 26429 chr12 57627867 57627867 1 + T C LIHC 57627865 + 57627845 57627885 41 TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGAG TTTATAGATGAAGGGGTCAACACTGGCTTAGAGGTGAAGAG < 41bp 1 0.491602826173323 1 0.237368732690811 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627865 chr12:57627867 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_25818 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26429 DeepMRMD:1;iRNA_m5C:0.999536712157815 26430 chr14 23237290 23237290 1 + G T LIHC 23237294 + 23237274 23237314 41 CGCTGAACTGGGGCTGGGGTCATACACCCCAGTGGGACTGA CGCTGAACTGGGGCTGTGGTCATACACCCCAGTGGGACTGA < 41bp 1 0.302132915787293 1 0.291755557060242 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23237294 chr14:23237290 nonsynonymous SNV 0.956 4 17 hm5C_associated_SNPs_25819 0 0 1 0 1 Cytosol 1 0.50023231078258 1 0.99953537843484 hm5C_site_26430 DeepMRMD:1;iRNA_m5C:0.99953537843484 26431 chr14 102805186 102805186 1 + C A LIHC 102805183 + 102805163 102805203 41 CATTAGGAATCACAGAATTCCTACGGAAGAAAGAAATACAC CATTAGGAATCACAGAATTCCTAAGGAAGAAAGAAATACAC < 41bp 1 0.403674798261729 1 0.611805379390717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805183 chr14:102805186 synonymous SNV . 0 24 hm5C_associated_SNPs_25820 0 0 1 1 1 chromatin 1 0.500231643921127 0.776389241218566 0.999536712157746 hm5C_site_26431 DeepMRMD:0.776389241218566;iRNA_m5C:0.999536712157746 26432 chr17 8347657 8347657 1 + C A LIHC 8347653 + 8347633 8347673 41 AAACTGCTTATTGGAAGGAACTTTCCTTGAAGTATAAGCAA AAACTGCTTATTGGAAGGAACTTTACTTGAAGTATAAGCAA < 41bp 1 0.19124040006005 1 0.25588783621788 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDEL1 ENSG00000166579 CDS Human protein_coding chr17:8347653 chr17:8347657 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_25821 0 0 1 0 2 Ribosome 1 0.500231643917052 1 0.999536712165895 hm5C_site_26432 DeepMRMD:1;iRNA_m5C:0.999536712165895 26433 chr19 14512305 14512305 1 + A G LIHC 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAGGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.271663079701775 1 0.0651932656764984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512305 synonymous SNV . 0 6 hm5C_associated_SNPs_25822 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26433 DeepMRMD:1;iRNA_m5C:0.999536712157815 26434 chr22 32275652 32275652 1 + T C LIHC 32275660 + 32275640 32275680 41 TCCTGCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGT TCCTGCCCTGGCCGCCTAGCCGGCCAGCCTCCTATGCAAGT < 41bp 1 0.523136677795804 1 0.345740377902985 experiment 0.953726644408391 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275660 chr22:32275652 nonsynonymous SNV 0.989 4 13 hm5C_associated_SNPs_25823 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_26434 DeepMRMD:1;iRNA_m5C:0.999536712157815 26435 chr22 32275652 32275652 1 + T C LIHC 32275664 + 32275644 32275684 41 GCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGTAGGC GCCCTGGCCGCCTAGCCGGCCAGCCTCCTATGCAAGTAGGC < 41bp 1 0.24344316354347 1 0.0761847198009491 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275664 chr22:32275652 nonsynonymous SNV 0.989 4 9 hm5C_associated_SNPs_25824 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_26435 DeepMRMD:1;iRNA_m5C:0.999536712157815 26436 chr1 29068969 29068969 1 + T C LIHC 29068982 + 29068962 29069002 41 CAGTCCCTCCATTGGCTTCTCCTATTCTTTGGGTGAAGCTG CAGTCCCCCCATTGGCTTCTCCTATTCTTTGGGTGAAGCTG < 41bp 1 0.0423568517943199 1 0.0879116058349609 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29068982 chr1:29068969 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_25825 0 0 1 0 1 Cytosol 1 0.50023164391862 1 0.99953671216276 hm5C_site_26436 DeepMRMD:1;iRNA_m5C:0.99953671216276 26437 chr2 74643206 74643206 1 + C A LIHC 74643210 - 74643190 74643230 41 CTCGAGGAGGGCGAGGACGTCGTAGGGGACATCTTGGCCGA CTCGAGGAGGGCGAGGACGTCGTATGGGACATCTTGGCCGA < 41bp 1 0.500284772343878 1 0.550827741622925 experiment 0.999430455312244 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C2orf81 ENSG00000159239 CDS Human protein_coding chr2:74643210 chr2:74643206 nonsynonymous SNV 0.814 3 25 hm5C_associated_SNPs_25826 0 0 0 0 1 exosome 1 0.500231650507827 0.89834451675415 0.999536698984346 hm5C_site_26437 DeepMRMD:0.89834451675415;iRNA_m5C:0.999536698984346 26438 chr4 52740446 52740446 1 + G T LIHC 52740449 + 52740429 52740469 41 TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGACTGCT TTTTGTAGGAAGTCTGCTGTCTTGCAGTTCTTCAGACTGCT < 41bp 1 0.319020701841142 1 0.0476633906364441 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52740449 chr4:52740446 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_25827 0 0 1 0 1 Ribosome 1 0.500231468674164 1 0.999537062651672 hm5C_site_26438 DeepMRMD:1;iRNA_m5C:0.999537062651672 26439 chr6 35436190 35436190 1 + G T LIHC 35436189 + 35436169 35436209 41 AGACATGCTAGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAG AGACATGCTAGTCTCTTTTCCTGTTAGCGCGGCGTGAGAAG < 41bp 1 0.221198592577637 1 0.173625379800797 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436189 chr6:35436190 . . 0 22 hm5C_associated_SNPs_25828 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_26439 DeepMRMD:1;iRNA_m5C:0.999536712157815 26440 chr6 35436190 35436190 1 + G T LIHC 35436198 + 35436178 35436218 41 AGTCTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGT AGTCTCTTTTCCTGTTAGCGCGGCGTGAGAAGCCATGAGGT < 41bp 1 0.65981147860538 1 0.863893330097198 experiment 0.68037704278924 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436198 chr6:35436190 . . 0 13 hm5C_associated_SNPs_25829 0 0 1 0 1 Cytosol 1 0.500231643857333 0.272213339805604 0.999536712285335 hm5C_site_26440 DeepMRMD:0.272213339805604;iRNA_m5C:0.999536712285335 26441 chr6 35436190 35436190 1 + G T LIHC 35436201 + 35436181 35436221 41 CTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG CTCTTTTCCTGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG < 41bp 1 0.357104620045457 1 0.466919541358948 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 UTR5 Human protein_coding chr6:35436201 chr6:35436190 . . 0 10 hm5C_associated_SNPs_25830 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26441 DeepMRMD:1;iRNA_m5C:0.999536712157815 26442 chr7 27833974 27833974 1 + G T LIHC 27833973 + 27833953 27833993 41 TAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGA TAATGTCTTCACAAAGAAAACTGGGAATCAGCAGAAAGTGA < 41bp 1 0.677637102803692 1 0.191536754369736 experiment 0.644725794392616 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833973 chr7:27833974 synonymous SNV . 0 22 hm5C_associated_SNPs_25831 0 0 1 0 2 Ribosome 1 0.500228137890973 1 0.999543724218054 hm5C_site_26442 DeepMRMD:1;iRNA_m5C:0.999543724218054 26443 chr8 61757431 61757431 1 + G T LIHC 61757430 + 61757410 61757450 41 ATTTGCTTTGCAGTTGGGGACGGTGGACAGACATTCTTTCC ATTTGCTTTGCAGTTGGGGACTGTGGACAGACATTCTTTCC < 41bp 1 0.150249501465071 1 0.17304664850235 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61757430 chr8:61757431 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_25832 0 0 1 0 1 Cytosol 1 0.500231635320814 1 0.999536729358372 hm5C_site_26443 DeepMRMD:1;iRNA_m5C:0.999536729358372 26444 chr10 112583335 112583335 1 + A G LIHC 112583337 + 112583317 112583357 41 TTCTTTGCCCTCTTGGGAACCAGAGGATGTGTTCAGTGAAC TTCTTTGCCCTCTTGGGAGCCAGAGGATGTGTTCAGTGAAC < 41bp 1 0.343986497271201 1 0.851433217525482 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control RBM20 ENSG00000203867 CDS Human protein_coding chr10:112583337 chr10:112583335 synonymous SNV . 0 19 hm5C_associated_SNPs_25833 0 0 1 0 2 chromatin 1 0.50023164392042 0.297133564949036 0.999536712159161 hm5C_site_26444 DeepMRMD:0.297133564949036;iRNA_m5C:0.999536712159161 26445 chr14 23794468 23794468 1 + A G LIHC 23794459 + 23794439 23794479 41 CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATG CTCCTTCTTTCTTCCAGGGGCCGGGCTAGGGCGACATCATG < 41bp 1 0.285137462449291 1 0.358551055192947 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794459 chr14:23794468 synonymous SNV . 0 30 hm5C_associated_SNPs_25834 0 0 1 0 1 unknown 1 0.500232255539171 1 0.999535488921659 hm5C_site_26445 DeepMRMD:1;iRNA_m5C:0.999535488921659 26446 chr14 23794468 23794468 1 + A G LIHC 23794460 + 23794440 23794480 41 TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATGG TCCTTCTTTCTTCCAGGGGCCGGGCTAGGGCGACATCATGG < 41bp 1 0.437587404265402 1 0.500105679035187 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794460 chr14:23794468 synonymous SNV . 0 29 hm5C_associated_SNPs_25835 0 0 1 0 1 unknown 1 0.500231643838134 0.999788641929626 0.999536712323732 hm5C_site_26446 DeepMRMD:0.999788641929626;iRNA_m5C:0.999536712323732 26447 chrX 18606124 18606124 1 + G T LIHC 18606141 + 18606121 18606161 41 TTGGGGAGCTTAGCGATGGACAGCCTTTATTTCCTGGAGAA TTGTGGAGCTTAGCGATGGACAGCCTTTATTTCCTGGAGAA < 41bp 1 0.41815924426587 1 0.328906059265137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18606141 chrX:18606124 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_25836 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_26447 DeepMRMD:1;iRNA_m5C:0.999536712157815 26448 chr17 65822352 65822352 1 + A G LIHC 65822356 + 65822336 65822376 41 ATGGAAGAGGACGACGATGACTCCGATTATCCGGAGGAGAT ATGGAAGAGGACGACGGTGACTCCGATTATCCGGAGGAGAT < 41bp 1 0.529721878023774 1 0.293176829814911 experiment 0.940556243952451 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65822356 chr17:65822352 nonsynonymous SNV 0.998 1 17 hm5C_associated_SNPs_25837 0 0 1 0 0 Cytosol 1 0.500231644877654 1 0.999536710244693 hm5C_site_26448 DeepMRMD:1;iRNA_m5C:0.999536710244693 26449 chr17 65822352 65822352 1 + A G LIHC 65822358 + 65822338 65822378 41 GGAAGAGGACGACGATGACTCCGATTATCCGGAGGAGATGG GGAAGAGGACGACGGTGACTCCGATTATCCGGAGGAGATGG < 41bp 1 0.187787344910376 1 0.0952989161014557 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65822358 chr17:65822352 nonsynonymous SNV 0.998 1 15 hm5C_associated_SNPs_25838 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26449 DeepMRMD:1;iRNA_m5C:0.999536712157815 26450 chr17 65822352 65822352 1 + A G LIHC 65822366 + 65822346 65822386 41 ACGACGATGACTCCGATTATCCGGAGGAGATGGAAGACGAC ACGACGGTGACTCCGATTATCCGGAGGAGATGGAAGACGAC < 41bp 1 0.692619300006388 1 0.841845452785492 experiment 0.614761399987225 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65822366 chr17:65822352 nonsynonymous SNV 0.998 1 7 hm5C_associated_SNPs_25839 0 0 1 0 0 Cytosol 1 0.500231643921093 0.316309094429016 0.999536712157815 hm5C_site_26450 DeepMRMD:0.316309094429016;iRNA_m5C:0.999536712157815 26451 chr1 45270441 45270441 1 + A G LIHC 45270421 + 45270401 45270441 41 CTGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCA CTGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCG < 41bp 1 0.680758686078841 1 0.4919193983078 experiment 0.638482627842317 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270421 chr1:45270441 nonsynonymous SNV 0.999 0 41 hm5C_associated_SNPs_25840 0 0 0 0 1 Cytosol 1 0.500231615735605 1 0.999536768528791 hm5C_site_26451 DeepMRMD:1;iRNA_m5C:0.999536768528791 26452 chr1 117641477 117641477 1 + G T LIHC 117641459 + 117641439 117641479 41 AGCTGTCTTCTAACAGGAATCCATCACTTGAAGATCAAGCT AGCTGTCTTCTAACAGGAATCCATCACTTGAAGATCAATCT < 41bp 1 0.0279117180613646 1 0.218562304973602 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117641459 chr1:117641477 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_25841 0 0 1 0 2 Nucleus 1 0.500231621769566 1 0.999536756460867 hm5C_site_26452 DeepMRMD:1;iRNA_m5C:0.999536756460867 26453 chr1 155154372 155154372 1 + C T LIHC 155154392 + 155154372 155154412 41 CGGCTGGCTATCAGCAAGGACCAGCGAGCAGTACGGAGTGT TGGCTGGCTATCAGCAAGGACCAGCGAGCAGTACGGAGTGT < 41bp 1 0.223011597510703 1 0.341706871986389 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155154392 chr1:155154372 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_25842 0 0 0 0 1 nucleolus 1 0.500231016865271 1 0.999537966269459 hm5C_site_26453 DeepMRMD:1;iRNA_m5C:0.999537966269459 26454 chr3 10123051 10123051 1 + G T LIHC 10123048 + 10123028 10123068 41 AGTGTTTAGCTGCTGAGAATCACGGTGTAGTTGATGGACCA AGTGTTTAGCTGCTGAGAATCACTGTGTAGTTGATGGACCA < 41bp 1 0.309834339295529 1 0.420271694660187 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10123048 chr3:10123051 nonsynonymous SNV 0.000 4 24 hm5C_associated_SNPs_25843 0 0 1 0 1 Cytosol 1 0.500231643921406 1 0.999536712157189 hm5C_site_26454 DeepMRMD:1;iRNA_m5C:0.999536712157189 26455 chr12 62783254 62783254 1 + G T LIHC 62783266 + 62783246 62783286 41 AGATCTTTGTACAGCATTGTCTGCTTTGTCAGGAATACCTG AGATCTTTTTACAGCATTGTCTGCTTTGTCAGGAATACCTG < 41bp 1 0.473290299536942 1 0.206179052591324 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP15 ENSG00000135655 CDS Human protein_coding chr12:62783266 chr12:62783254 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_25844 0 0 1 0 2 Ribosome 1 0.500231643265816 1 0.999536713468368 hm5C_site_26455 DeepMRMD:1;iRNA_m5C:0.999536713468368 26456 chr21 45534116 45534116 1 + T C LIHC 45534115 + 45534095 45534135 41 TCTGTGCTGCACCACTTCCACTTCAAGGGCTCTGTGCACAG TCTGTGCTGCACCACTTCCACCTCAAGGGCTCTGTGCACAG < 41bp 1 0.494295565393237 1 0.236419141292572 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45534115 chr21:45534116 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_25845 0 0 1 0 2 Nucleus 1 0.500231581113902 1 0.999536837772197 hm5C_site_26456 DeepMRMD:1;iRNA_m5C:0.999536837772197 26457 chr1 20224100 20224100 1 + A G LIHC 20224116 + 20224096 20224136 41 TACGACAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC TACGGCAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC < 41bp 1 0.276910552537348 1 0.238199561834335 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20224116 chr1:20224100 nonsynonymous SNV 0.994 2 5 hm5C_associated_SNPs_25846 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26457 DeepMRMD:1;iRNA_m5C:0.999536712157815 26458 chr15 31221547 31221547 1 + A G LIHC 31221554 + 31221534 31221574 41 TGAGCAGGAAGGCAGAGTGGCTTCCCTTGTCAGCTGGGATC TGAGCAGGAAGGCGGAGTGGCTTCCCTTGTCAGCTGGGATC < 41bp 1 0.238819882395298 1 0.0612379610538483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAN1 ENSG00000198690 CDS Human protein_coding chr15:31221554 chr15:31221547 nonsynonymous SNV 0.460 3 14 hm5C_associated_SNPs_25847 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26458 DeepMRMD:1;iRNA_m5C:0.999536712157815 26459 chr1 12027091 12027091 1 + T C LIHC 12027087 + 12027067 12027107 41 CCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG CCCCATCTTCACGGAGGTGGCCTGCGATGAGCTGGTGGAGG < 41bp 1 0.151128847756659 1 0.212949156761169 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027087 chr1:12027091 synonymous SNV . 0 25 hm5C_associated_SNPs_25848 0 0 1 0 2 Nucleus 1 0.500231643933158 1 0.999536712133684 hm5C_site_26459 DeepMRMD:1;iRNA_m5C:0.999536712133684 26460 chr1 28599950 28599950 1 + A G LIHC 28599931 + 28599911 28599951 41 ATGCAGCAGCTGCAGGAGAGCCTGCTGCGGGATGAGGGGAC ATGCAGCAGCTGCAGGAGAGCCTGCTGCGGGATGAGGGGGC < 41bp 1 0.155380565618442 1 0.349448561668396 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28599931 chr1:28599950 nonsynonymous SNV 0.439 0 40 hm5C_associated_SNPs_25849 0 0 1 0 2 Ribosome 1 0.50023164392107 1 0.99953671215786 hm5C_site_26460 DeepMRMD:1;iRNA_m5C:0.99953671215786 26461 chr1 222837351 222837351 1 + T C LIHC 222837353 + 222837333 222837373 41 TCTGCAGGTTAATATGGCTCCAAAAGGGCCCCCTCCTTTCC TCTGCAGGTTAATATGGCCCCAAAAGGGCCCCCTCCTTTCC < 41bp 1 0.574005377285674 1 0.190613895654678 experiment 0.851989245428653 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222837353 chr1:222837351 synonymous SNV . 0 19 hm5C_associated_SNPs_25850 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_26461 DeepMRMD:1;iRNA_m5C:0.999536712157815 26462 chr2 10264891 10264891 1 + C A LIHC 10264882 + 10264862 10264902 41 GAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCA GAAGTTCAGATTACAGAAGCCCGCTGTTTATATGGCTTCCA < 41bp 1 0.210590197197428 1 0.0560451149940491 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RRM2 ENSG00000171848 CDS Human protein_coding chr2:10264882 chr2:10264891 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_25851 0 0 1 0 2 Ribosome 1 0.500231643921393 1 0.999536712157215 hm5C_site_26462 DeepMRMD:1;iRNA_m5C:0.999536712157215 26463 chr2 32362205 32362205 1 + C A LIHC 32362198 + 32362178 32362218 41 GTACAGTCTGCTGGAGATGACAGAGTACTTGTAATGGGTGC GTACAGTCTGCTGGAGATGACAGAGTAATTGTAATGGGTGC < 41bp 1 0.520328892973129 1 0.886602640151978 experiment 0.959342214053741 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32362198 chr2:32362205 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_25852 0 0 1 0 2 Ribosome 1 0.500231646936149 0.226794719696044 0.999536706127703 hm5C_site_26463 DeepMRMD:0.226794719696044;iRNA_m5C:0.999536706127703 26464 chr4 174239650 174239650 1 + A G LIHC 174239643 + 174239623 174239663 41 CCAGTGTTTGACAAAGGGAGCTGATGGATCAAAAGTTATGA CCAGTGTTTGACAAAGGGAGCTGATGGGTCAAAAGTTATGA < 41bp 1 0.201990598877895 1 0.0744695067405701 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174239643 chr4:174239650 synonymous SNV . 0 28 hm5C_associated_SNPs_25853 0 0 1 0 2 chromatin 1 0.500231643851072 1 0.999536712297856 hm5C_site_26464 DeepMRMD:1;iRNA_m5C:0.999536712297856 26465 chr5 54640987 54640987 1 + C A LIHC 54640997 + 54640977 54641017 41 GTGATTTGGCCAAAGGAGACCAGAAAGGGCGGAAAGGAGGA GTGATTTGGCAAAAGGAGACCAGAAAGGGCGGAAAGGAGGA < 41bp 1 0.681962353202799 1 0.50161749124527 experiment 0.636075293594402 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640997 chr5:54640987 synonymous SNV . 0 11 hm5C_associated_SNPs_25855 0 0 1 0 1 Nucleus 1 0.500231643921157 0.99676501750946 0.999536712157685 hm5C_site_26465 DeepMRMD:0.99676501750946;iRNA_m5C:0.999536712157685 26466 chr5 54640987 54640987 1 + C A LIHC 54641006 + 54640986 54641026 41 CCAAAGGAGACCAGAAAGGGCGGAAAGGAGGAACAAAAGGT CAAAAGGAGACCAGAAAGGGCGGAAAGGAGGAACAAAAGGT < 41bp 1 0.638367365689579 1 0.41109561920166 experiment 0.723265268620841 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54641006 chr5:54640987 synonymous SNV . 0 2 hm5C_associated_SNPs_25856 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26466 DeepMRMD:1;iRNA_m5C:0.999536712157815 26467 chr7 77227167 77227167 1 + A G LIHC 77227168 + 77227148 77227188 41 TCTTTATTTAGGAGGATGAACAAGCAAGAACAGACTACTTC TCTTTATTTAGGAGGATGAGCAAGCAAGAACAGACTACTTC < 41bp 1 0.348686040929661 1 0.244753360748291 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77227168 chr7:77227167 synonymous SNV . 0 20 hm5C_associated_SNPs_25857 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26467 DeepMRMD:1;iRNA_m5C:0.999536712157815 26468 chr7 129064718 129064718 1 + C T LIHC 129064717 + 129064697 129064737 41 TTCACCTTTGATCACTAGGGCCGCCTGCTGAACCTTAGCTG TTCACCTTTGATCACTAGGGCTGCCTGCTGAACCTTAGCTG < 41bp 1 0.191276712677475 1 0.197599321603775 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064717 chr7:129064718 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_25858 0 0 0 0 2 chromatin 1 0.500231643921131 1 0.999536712157739 hm5C_site_26468 DeepMRMD:1;iRNA_m5C:0.999536712157739 26469 chr8 56922510 56922510 1 + C T LIHC 56922491 + 56922471 56922511 41 AACTAATGCCGACGTGATGACCGCCCTGTCCCAGGGCTACA AACTAATGCCGACGTGATGACCGCCCTGTCCCAGGGCTATA < 41bp 1 0.245664638968194 1 0.021828830242157 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56922491 chr8:56922510 synonymous SNV . 0 40 hm5C_associated_SNPs_25859 0 0 1 0 1 Cytosol 1 0.500231643921157 1 0.999536712157685 hm5C_site_26469 DeepMRMD:1;iRNA_m5C:0.999536712157685 26470 chr9 131011001 131011001 1 + C A LIHC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGGGACCTCATGCACAAGACCATCATG < 41bp 1 0.378632631085462 1 0.0961782932281494 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131011001 nonsynonymous SNV 0.995 4 28 hm5C_associated_SNPs_25860 0 0 1 2 1 Endoplasmic reticulum 1 0.500231643816094 1 0.999536712367812 hm5C_site_26470 DeepMRMD:1;iRNA_m5C:0.999536712367812 26471 chr12 69128527 69128527 1 + A T LIHC 69128531 + 69128511 69128551 41 GTGGTTTAAGCATATGAATTCAGTTCCACAAAAACCTGCTT GTGGTTTAAGCATATGTATTCAGTTCCACAAAAACCTGCTT < 41bp 1 0.21705692204965 1 0.397006869316101 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69128531 chr12:69128527 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_25862 0 0 1 0 2 chromatin 1 0.500228018405801 1 0.999543963188398 hm5C_site_26471 DeepMRMD:1;iRNA_m5C:0.999543963188398 26472 chr15 32920987 32920987 1 + T C LIHC 32920986 + 32920966 32921006 41 CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTGGTA CAGAACACCTTCTATTACACCCCAAGAAGAAAGAATTGGTA < 41bp 1 0.190850047487882 1 0.179572522640228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32920986 chr15:32920987 synonymous SNV . 0 22 hm5C_associated_SNPs_25863 0 0 1 0 2 Ribosome 1 0.500231643922762 1 0.999536712154476 hm5C_site_26472 DeepMRMD:1;iRNA_m5C:0.999536712154476 26473 chr17 18057178 18057178 1 + G A LIHC 18057159 + 18057139 18057179 41 CTGCACCGCCTCATCAATCCCAACTTCTACGGCTATCAGGA CTGCACCGCCTCATCAATCCCAACTTCTACGGCTATCAGAA < 41bp 1 0.132925619405526 1 0.150025695562363 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MYO15A ENSG00000091536 CDS Human protein_coding chr17:18057159 chr17:18057178 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_25864 0 0 0 0 1 chromatin 1 0.500231643945995 1 0.999536712108009 hm5C_site_26473 DeepMRMD:1;iRNA_m5C:0.999536712108009 26474 chr17 57918682 57918682 1 + C A LIHC 57918672 + 57918652 57918692 41 TTGACTGTTGAATCTCATGGCAACACCAGTCGATGGGCTGT TTGACTGTTGAATCTCATGGCAACACCAGTAGATGGGCTGT < 41bp 1 0.65596699958465 1 0.251940101385117 experiment 0.688066000830699 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control MIR21 ENSG00000199004 ncRNA_exonic Human other chr17:57918672 chr17:57918682 . . 0 31 hm5C_associated_SNPs_25865 0 0 1 0 0 unknown 1 0.500231643921101 1 0.999536712157798 hm5C_site_26474 DeepMRMD:1;iRNA_m5C:0.999536712157798 26475 chr17 67515549 67515549 1 + C A LIHC 67515562 + 67515542 67515582 41 CTGTCACCTTTTATGGCGCACTGTTTCGGGAGGTAGGTGAC CTGTCACATTTTATGGCGCACTGTTTCGGGAGGTAGGTGAC < 41bp 1 0.195467493567793 1 0.0263736248016357 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67515562 chr17:67515549 synonymous SNV . 0 8 hm5C_associated_SNPs_25867 0 0 1 0 2 cytosol 1 0.50023164392109 1 0.999536712157819 hm5C_site_26475 DeepMRMD:1;iRNA_m5C:0.999536712157819 26476 chr18 48446834 48446834 1 + G T LIHC 48446838 + 48446818 48446858 41 GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGAAGA GTTTTTAGATATGGCCTGAACACACTCATTCAGTTCGAAGA < 41bp 1 0.327048180614978 1 0.209652632474899 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ME2 ENSG00000082212 CDS Human protein_coding chr18:48446838 chr18:48446834 nonsynonymous SNV 0.946 1 17 hm5C_associated_SNPs_25868 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_26476 DeepMRMD:1;iRNA_m5C:0.999536712157815 26477 chr19 49469542 49469542 1 + C T LIHC 49469530 + 49469510 49469550 41 TTCTGAGCCATTTCTCCCTTCTATATAGAAGCCAGCTGAAG TTCTGAGCCATTTCTCCCTTCTATATAGAAGCTAGCTGAAG < 41bp 1 0.3218383843243 1 0.817295074462891 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469530 chr19:49469542 nonsynonymous SNV 0.797 2 33 hm5C_associated_SNPs_25869 0 0 1 0 1 Cytosol 1 0.500231643921095 0.365409851074218 0.999536712157811 hm5C_site_26477 DeepMRMD:0.365409851074218;iRNA_m5C:0.999536712157811 26478 chrX 14929377 14929377 1 + T C LIHC 14929381 + 14929361 14929401 41 TCCTTTCAAGTATAGCTATCCACCACTAGTAGATGATGACT TCCTTTCAAGTATAGCCATCCACCACTAGTAGATGATGACT < 41bp 1 0.590381203498244 1 0.493669241666794 experiment 0.819237593003512 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14929381 chrX:14929377 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_25870 0 0 0 0 1 Cytosol 1 0.500231643922125 1 0.999536712155751 hm5C_site_26478 DeepMRMD:1;iRNA_m5C:0.999536712155751 26479 chrX 47065756 47065756 1 + G A LIHC 47065738 + 47065718 47065758 41 GGCAATGTGCAGGTGGTGATCCCCTTCCTGACAGAGTCGTA GGCAATGTGCAGGTGGTGATCCCCTTCCTGACAGAGTCATA < 41bp 1 0.27777704339005 1 0.0701326727867126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47065738 chrX:47065756 synonymous SNV . 0 39 hm5C_associated_SNPs_25871 0 0 1 0 1 Nucleus 1 0.500231639868215 1 0.99953672026357 hm5C_site_26479 DeepMRMD:1;iRNA_m5C:0.99953672026357 26480 chr16 90028226 90028226 1 + T C LIHC 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACGACCTGGCTGCGATCCCTGCACGCGTTGTACACAA < 41bp 1 0.377456666872564 1 0.280555903911591 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028226 nonsynonymous SNV 0.913 1 17 hm5C_associated_SNPs_25872 0 0 1 0 2 Ribosome 1 0.500232753439558 1 0.999534493120885 hm5C_site_26480 DeepMRMD:1;iRNA_m5C:0.999534493120885 26481 chr16 90028226 90028226 1 + T C LIHC 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACGACCTGGCTGCGATCCCTGCACGCGTTGTACACAAC < 41bp 1 0.103183821568442 1 0.182238101959229 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028226 nonsynonymous SNV 0.913 1 16 hm5C_associated_SNPs_25873 0 0 1 0 2 Ribosome 1 0.500231643769181 1 0.999536712461638 hm5C_site_26481 DeepMRMD:1;iRNA_m5C:0.999536712461638 26482 chr22 40660706 40660706 1 + G A LIHC 40660713 + 40660693 40660733 41 CTCAACCCTTGGAGGTGCTGCTGCTTCAAATTATGCAAATT CTCAACCCTTGGAAGTGCTGCTGCTTCAAATTATGCAAATT < 41bp 1 0.0623781077107269 1 0.0520219206809998 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40660713 chr22:40660706 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_25874 0 0 1 0 0 Cytosol 1 0.500231643921061 1 0.999536712157877 hm5C_site_26482 DeepMRMD:1;iRNA_m5C:0.999536712157877 26483 chr12 101520844 101520844 1 + C A LIHC 101520850 + 101520830 101520870 41 CCACAACGAGTGGCCGTGACCATGTAGGTGAGAGGTGTGCT CCACAACGAGTGGCAGTGACCATGTAGGTGAGAGGTGTGCT < 41bp 1 0.441303250321183 1 0.302247583866119 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANO4 ENSG00000151572 CDS Human protein_coding chr12:101520850 chr12:101520844 nonsynonymous SNV 0.969 4 15 hm5C_associated_SNPs_25876 0 0 0 0 2 exosome 1 0.500231647297967 1 0.999536705404067 hm5C_site_26483 DeepMRMD:1;iRNA_m5C:0.999536705404067 26484 chr19 11548763 11548763 1 + C T LIHC 11548761 + 11548741 11548781 41 GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAACGA GGCTATAAGCCCCTGTATATCCTCTCCAACCGGGTCAACGA < 41bp 1 0.14096403910502 1 0.0706776976585388 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11548761 chr19:11548763 nonsynonymous SNV 0.908 0 23 hm5C_associated_SNPs_25877 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_26484 DeepMRMD:1;iRNA_m5C:0.999536712157814 26485 chrX 153628235 153628235 1 + C A LIHC 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATATCCGGGTGCGGCTCCACCCCTTACACGTCATCCGCAT < 41bp 1 0.375309758013194 1 0.0475526750087738 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628235 nonsynonymous SNV 0.996 2 27 hm5C_associated_SNPs_25878 0 0 1 0 1 Cytosol 1 0.500231643851944 1 0.999536712296112 hm5C_site_26485 DeepMRMD:1;iRNA_m5C:0.999536712296112 26486 chr3 184021755 184021755 1 + T C LIHC 184021744 + 184021724 184021764 41 GCTCTTTGTAGTCAGGAGCTCTTCTTGCCTGTGGCATAGTG GCTCTTTGTAGTCAGGAGCTCTTCTTGCCTGCGGCATAGTG < 41bp 1 0.134068586381265 1 0.0910423398017883 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021744 chr3:184021755 synonymous SNV . 0 32 hm5C_associated_SNPs_25879 0 0 1 0 1 Ribosome 1 0.500231646279369 1 0.999536707441262 hm5C_site_26486 DeepMRMD:1;iRNA_m5C:0.999536707441262 26487 chr17 38318311 38318311 1 + T C LIHC 38318298 + 38318278 38318318 41 CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGACGATGATG < 41bp 1 0.211439469019321 1 0.0334231853485107 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318298 chr17:38318311 synonymous SNV . 0 34 hm5C_associated_SNPs_25880 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26487 DeepMRMD:1;iRNA_m5C:0.999536712157815 26488 chr17 38318311 38318311 1 + T C LIHC 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGACGATGATGAAGAT < 41bp 1 0.142045612911974 1 0.191481173038483 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318311 synonymous SNV . 0 29 hm5C_associated_SNPs_25881 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26488 DeepMRMD:1;iRNA_m5C:0.999536712157815 26489 chr5 34925045 34925045 1 + T G LIHC 34925039 + 34925019 34925059 41 TCCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCCT TCCAGGGAAGTTTTGGAGGACCAACTGTATATGAAAATCCT < 41bp 1 0.0716929534569446 1 0.0555792152881622 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34925039 chr5:34925045 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_25882 0 0 1 0 2 Ribosome 1 0.50023168204368 1 0.999536635912641 hm5C_site_26489 DeepMRMD:1;iRNA_m5C:0.999536635912641 26490 chr5 34925045 34925045 1 + T G LIHC 34925040 + 34925020 34925060 41 CCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCCTC CCAGGGAAGTTTTGGAGGACCAACTGTATATGAAAATCCTC < 41bp 1 0.469779293892907 1 0.0786592960357666 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34925040 chr5:34925045 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_25883 0 0 1 0 2 Ribosome 1 0.500231643923405 1 0.99953671215319 hm5C_site_26490 DeepMRMD:1;iRNA_m5C:0.99953671215319 26491 chr6 31378413 31378413 1 + C T LIHC 31378418 + 31378398 31378438 41 ATCTGGATGGTCAGCCCTTCCTGCGCTATGACAGGCAGAAA ATCTGGATGGTCAGCTCTTCCTGCGCTATGACAGGCAGAAA < 41bp 1 0.659215030522873 1 0.494583964347839 experiment 0.681569938954255 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MICA ENSG00000204520 CDS Human protein_coding chr6:31378418 chr6:31378413 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_25884 0 0 0 0 1 Ribosome 1 0.500231643921086 1 0.999536712157828 hm5C_site_26491 DeepMRMD:1;iRNA_m5C:0.999536712157828 26492 chrX 135067806 135067806 1 + G A LIHC 135067817 + 135067797 135067837 41 GGCGGCGGAGAGGCTAGAGCCATGGACGAGGAGATCGTGTC GGCGGCGGAAAGGCTAGAGCCATGGACGAGGAGATCGTGTC < 41bp 1 0.682397581442349 1 0.760230183601379 experiment 0.635204837115302 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135067817 chrX:135067806 nonsynonymous SNV 0.025 0 10 hm5C_associated_SNPs_25885 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.479539632797242 0.999536712157815 hm5C_site_26492 DeepMRMD:0.479539632797242;iRNA_m5C:0.999536712157815 26493 chr17 57754422 57754422 1 + C T LIHC 57754417 + 57754397 57754437 41 ATCTACATAGACAGTAATAACAACCCGGAGAGATTTCTTCG ATCTACATAGACAGTAATAACAACCTGGAGAGATTTCTTCG < 41bp 1 0.327527671398896 1 0.0852772295475006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57754417 chr17:57754422 nonsynonymous SNV 0.999 4 26 hm5C_associated_SNPs_25886 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_26493 DeepMRMD:1;iRNA_m5C:0.999536712157815 26494 chr1 27106821 27106821 1 + G A LIHC 27106819 + 27106799 27106839 41 CCACACCCCCCTTCAGCCGCCTGGAGAAGTTGTATAGCACT CCACACCCCCCTTCAGCCGCCTAGAGAAGTTGTATAGCACT < 41bp 1 0.319375603396415 1 0.481923013925552 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27106819 chr1:27106821 synonymous SNV . 0 23 hm5C_associated_SNPs_25887 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26494 DeepMRMD:1;iRNA_m5C:0.999536712157815 26495 chr3 42166969 42166969 1 + A G LIHC 42166968 + 42166948 42166988 41 TCATTAGCCTGCTGGAGGAGCAGCTGCCCCATTATAAGTTA TCATTAGCCTGCTGGAGGAGCGGCTGCCCCATTATAAGTTA < 41bp 1 0.371725810662917 1 0.322656035423279 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42166968 chr3:42166969 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_25889 0 0 1 0 1 Cytosol 1 0.500231651211876 1 0.999536697576249 hm5C_site_26495 DeepMRMD:1;iRNA_m5C:0.999536697576249 26496 chr5 10254912 10254912 1 + A G LIHC 10254899 + 10254879 10254919 41 TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGAT TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCGGGATGAT < 41bp 1 0.15302101209304 1 0.0909264981746674 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254899 chr5:10254912 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_25890 0 0 1 0 1 Cytosol 1 0.500231604305649 1 0.999536791388702 hm5C_site_26496 DeepMRMD:1;iRNA_m5C:0.999536791388702 26497 chr5 10254912 10254912 1 + A G LIHC 10254903 + 10254883 10254923 41 CAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAA CAAGCTGATGGTGGAACTGTCCAAGTCTCGGGATGATGAAA < 41bp 1 0.235093750754405 1 0.194056212902069 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254903 chr5:10254912 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_25891 0 0 1 0 1 Cytosol 1 0.500231643922159 1 0.999536712155682 hm5C_site_26497 DeepMRMD:1;iRNA_m5C:0.999536712155682 26498 chr6 160481652 160481652 1 + T C LIHC 160481661 + 160481641 160481681 41 AAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCCG AAATTCCTGCACCAAGATATCGACTCTGGGCAAGGGATCCG < 41bp 1 0.195989018254295 1 0.260136365890503 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160481661 chr6:160481652 synonymous SNV . 0 12 hm5C_associated_SNPs_25893 0 0 1 0 2 Endoplasmic reticulum 1 0.500231641011689 1 0.999536717976623 hm5C_site_26498 DeepMRMD:1;iRNA_m5C:0.999536717976623 26499 chr7 98563383 98563383 1 + G A LIHC 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACGCGCCTGGCAGTGATGAGCATAGAGATGCGGAAGAACTT < 41bp 1 0.0910630681335852 1 0.325062096118927 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563383 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_25894 0 0 1 0 1 Nucleus 1 0.500231701505432 1 0.999536596989136 hm5C_site_26499 DeepMRMD:1;iRNA_m5C:0.999536596989136 26500 chr9 2186199 2186199 1 + A G LIHC 2186182 + 2186162 2186202 41 GAAGAGAGTGAGGATGAAAGCAATGAAGAGGAGGAAGAGGA GAAGAGAGTGAGGATGAAAGCAATGAAGAGGAGGAAGGGGA < 41bp 1 0.33552812224686 1 0.328797906637192 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186182 chr9:2186199 nonsynonymous SNV 0.982 0 38 hm5C_associated_SNPs_25895 0 0 1 0 0 Nucleus 1 0.500231644090032 1 0.999536711819936 hm5C_site_26500 DeepMRMD:1;iRNA_m5C:0.999536711819936 26501 chr9 109689831 109689831 1 + A G LIHC 109689820 + 109689800 109689840 41 CGGACGGTCAAAGGGGTACTCATTCATTATCAGAAGAAGCA CGGACGGTCAAAGGGGTACTCATTCATTATCGGAAGAAGCA < 41bp 1 0.0287213643289427 1 0.069343775510788 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109689820 chr9:109689831 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_25896 0 0 0 0 0 exosome 1 0.500231643925395 1 0.999536712149209 hm5C_site_26501 DeepMRMD:1;iRNA_m5C:0.999536712149209 26502 chr12 88439522 88439522 1 + A G LIHC 88439525 + 88439505 88439545 41 TTAGAACAAACACTGGAACTCATAGGAACAAATATCAATGG TTAGAACAAACACTGGAGCTCATAGGAACAAATATCAATGG < 41bp 1 0.41986679631235 1 0.252210050821304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf29 ENSG00000133641 CDS Human protein_coding chr12:88439525 chr12:88439522 synonymous SNV . 0 18 hm5C_associated_SNPs_25897 0 0 1 1 1 Cytosol 1 0.500231643260084 1 0.999536713479831 hm5C_site_26502 DeepMRMD:1;iRNA_m5C:0.999536713479831 26503 chr12 105519803 105519803 1 + G T LIHC 105519783 + 105519763 105519803 41 TTCAATGTTTCCTGTCTAGGCCTGTATAGAACAACAATTTG TTCAATGTTTCCTGTCTAGGCCTGTATAGAACAACAATTTT < 41bp 1 0.105257882804693 1 0.0648104250431061 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519783 chr12:105519803 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_25898 0 0 1 0 1 unknown 1 0.500231643922857 1 0.999536712154286 hm5C_site_26503 DeepMRMD:1;iRNA_m5C:0.999536712154286 26504 chr12 105519803 105519803 1 + G T LIHC 105519794 + 105519774 105519814 41 CTGTCTAGGCCTGTATAGAACAACAATTTGATTCTCTCAAT CTGTCTAGGCCTGTATAGAACAACAATTTTATTCTCTCAAT < 41bp 1 0.699373423204141 1 0.163630723953247 experiment 0.601253153591718 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105519794 chr12:105519803 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_25899 0 0 1 0 1 unknown 1 0.500231656752511 1 0.999536686494979 hm5C_site_26504 DeepMRMD:1;iRNA_m5C:0.999536686494979 26505 chr14 102469021 102469021 1 + G A LIHC 102469036 + 102469016 102469056 41 CAGTGGAAACCCAGCGGTTTCAGAGGTATGGCCTCCAGCCA CAGTGAAAACCCAGCGGTTTCAGAGGTATGGCCTCCAGCCA < 41bp 1 0.428116607688 1 0.789078831672668 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102469036 chr14:102469021 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_25900 0 0 1 0 1 Cytosol 1 0.500231643921092 0.421842336654664 0.999536712157815 hm5C_site_26505 DeepMRMD:0.421842336654664;iRNA_m5C:0.999536712157815 26506 chr14 105175662 105175662 1 + C T LIHC 105175682 + 105175662 105175702 41 CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC TCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC < 41bp 1 0.509190713929781 1 0.79532265663147 experiment 0.981618572140438 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105175682 chr14:105175662 nonsynonymous SNV 0.771 0 1 hm5C_associated_SNPs_25901 0 0 1 0 2 Cytosol 1 0.500231643921078 0.40935468673706 0.999536712157843 hm5C_site_26506 DeepMRMD:0.40935468673706;iRNA_m5C:0.999536712157843 26507 chr17 40646474 40646474 1 + C A LIHC 40646461 + 40646441 40646481 41 TGGATGGTACTGAGGGAGAGCCGGATCCTTTCCCAGAAGAA TGGATGGTACTGAGGGAGAGCCGGATCCTTTCCAAGAAGAA < 41bp 1 0.40937810705251 1 0.461233615875244 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40646461 chr17:40646474 nonsynonymous SNV 0.997 2 34 hm5C_associated_SNPs_25902 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643837661 1 0.999536712324678 hm5C_site_26507 DeepMRMD:1;iRNA_m5C:0.999536712324678 26508 chr17 79652703 79652703 1 + C A LIHC 79652714 + 79652694 79652734 41 GACCTGATCCGCCAAGGGGACACACAGTGAGTTAGCGGGGC GACCTGATCAGCCAAGGGGACACACAGTGAGTTAGCGGGGC < 41bp 1 0.19339666464321 1 0.172797322273254 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79652714 chr17:79652703 nonsynonymous SNV 0.993 4 10 hm5C_associated_SNPs_25903 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26508 DeepMRMD:1;iRNA_m5C:0.999536712157815 26509 chr22 44368128 44368128 1 + T C LIHC 44368123 + 44368103 44368143 41 TTTTTTTATTTAGGTGATGACGCACTTCCAAATGGGTTAGA TTTTTTTATTTAGGTGATGACGCACCTCCAAATGGGTTAGA < 41bp 1 0.132493782428269 1 0.115612179040909 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44368123 chr22:44368128 nonsynonymous SNV 0.898 1 26 hm5C_associated_SNPs_25904 0 0 1 0 2 Cytosol 1 0.500231643921112 1 0.999536712157777 hm5C_site_26509 DeepMRMD:1;iRNA_m5C:0.999536712157777 26510 chrX 41200777 41200777 1 + A G LIHC 41200770 + 41200750 41200790 41 AGACAGTTCAGGGTGGAGTTCTAGCAAAGATAAGGATGCGT AGACAGTTCAGGGTGGAGTTCTAGCAAGGATAAGGATGCGT < 41bp 1 0.341481147113755 1 0.0903386771678925 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41200770 chrX:41200777 synonymous SNV . 0 28 hm5C_associated_SNPs_25906 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26510 DeepMRMD:1;iRNA_m5C:0.999536712157815 26511 chrX 64956691 64956691 1 + A G LIHC 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAGCGTGAAGTGGCAGAGAAGGAG < 41bp 1 0.541290771590733 1 0.469016015529633 experiment 0.917418456818533 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956691 nonsynonymous SNV 0.986 0 27 hm5C_associated_SNPs_25907 0 0 1 0 2 Ribosome 1 0.500231644039991 1 0.999536711920019 hm5C_site_26511 DeepMRMD:1;iRNA_m5C:0.999536711920019 26512 chrX 64956691 64956691 1 + A G LIHC 64956695 + 64956675 64956715 41 GAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAGAAGA GAAGAAGAAGCGTGAAGTGGCAGAGAAGGAGAAAGAGAAGA < 41bp 1 0.483975041360109 1 0.414414077997208 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956695 chrX:64956691 nonsynonymous SNV 0.986 0 17 hm5C_associated_SNPs_25908 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26512 DeepMRMD:1;iRNA_m5C:0.999536712157815 26513 chr1 9776674 9776674 1 + C A LIHC 9776665 + 9776645 9776685 41 CTGTATGGCAGCTACCCGCTCTGCCAGTTCCAGGTGAGGCC CTGTATGGCAGCTACCCGCTCTGCCAGTTACAGGTGAGGCC < 41bp 1 0.325931789279865 1 0.192120343446732 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9776665 chr1:9776674 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_25909 0 0 1 0 1 Nucleus 1 0.50023164640422 1 0.999536707191561 hm5C_site_26513 DeepMRMD:1;iRNA_m5C:0.999536707191561 26514 chr1 36358852 36358852 1 + T A LIHC 36358839 + 36358819 36358859 41 CTGTTCCCTTGGAGTCTGTGCAAGCCCTGGATGTGGCCATG CTGTTCCCTTGGAGTCTGTGCAAGCCCTGGATGAGGCCATG < 41bp 1 0.279963459609526 1 0.486344456672668 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGO1 ENSG00000092847 CDS Human protein_coding chr1:36358839 chr1:36358852 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_25910 0 0 1 0 1 Cytosol 1 0.500231643898974 1 0.999536712202052 hm5C_site_26514 DeepMRMD:1;iRNA_m5C:0.999536712202052 26515 chr1 41475858 41475858 1 + A G LIHC 41475860 + 41475840 41475880 41 TATAGTGACAGGAGTGGAAGCAGCTCCCCTGACTCTGAAAT TATAGTGACAGGAGTGGAGGCAGCTCCCCTGACTCTGAAAT < 41bp 1 0.28088600128454 1 0.778949379920959 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41475860 chr1:41475858 nonsynonymous SNV 0.998 1 19 hm5C_associated_SNPs_25911 0 0 1 0 1 Nucleus 1 0.500231643921092 0.442101240158082 0.999536712157815 hm5C_site_26515 DeepMRMD:0.442101240158082;iRNA_m5C:0.999536712157815 26516 chr1 45218873 45218873 1 + A G LIHC 45218862 + 45218842 45218882 41 ATACCATTGAGGATGGTCAGCGAGGAGATGGAAGAGCAAGT ATACCATTGAGGATGGTCAGCGAGGAGATGGGAGAGCAAGT < 41bp 1 0.587934426465108 1 0.473000258207321 experiment 0.824131147069784 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218862 chr1:45218873 nonsynonymous SNV 0.959 0 32 hm5C_associated_SNPs_25912 0 0 1 0 2 Nucleus 1 0.50023164392158 1 0.999536712156839 hm5C_site_26516 DeepMRMD:1;iRNA_m5C:0.999536712156839 26517 chr1 109325274 109325274 1 + A G LIHC 109325284 + 109325264 109325304 41 TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCATCA TTGACAGGGAGATTCCCAAGCTTATGAAAGAAATTTCATCA < 41bp 1 0.2177090967753 1 0.0682648420333862 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109325284 chr1:109325274 synonymous SNV . 0 11 hm5C_associated_SNPs_25913 0 0 1 0 2 Nucleus 1 0.500231643952346 1 0.999536712095309 hm5C_site_26517 DeepMRMD:1;iRNA_m5C:0.999536712095309 26518 chr3 49713561 49713561 1 + A G LIHC 49713571 + 49713551 49713591 41 AAGCGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT AAGCGCCCCAGGGCCGAGTCCTTCTTTCAGACCAAAGCCTT < 41bp 1 0.217905834986725 1 0.104798704385757 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713571 chr3:49713561 nonsynonymous SNV 0.985 3 11 hm5C_associated_SNPs_25915 0 0 1 0 2 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_26518 DeepMRMD:1;iRNA_m5C:0.999536712157806 26519 chr3 128973914 128973914 1 + T C LIHC 128973917 + 128973897 128973937 41 AGCTCTGCCCTCGTGTCTTCCTTGGTGTGTAGTTGCTGCTG AGCTCTGCCCTCGTGTCCTCCTTGGTGTGTAGTTGCTGCTG < 41bp 1 0.592855077115595 1 0.730689704418182 experiment 0.814289845768809 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973917 chr3:128973914 synonymous SNV . 0 18 hm5C_associated_SNPs_25916 0 0 1 0 2 Nucleus 1 0.500231643921101 0.538620591163636 0.999536712157798 hm5C_site_26519 DeepMRMD:0.538620591163636;iRNA_m5C:0.999536712157798 26520 chr4 123145715 123145715 1 + G T LIHC 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCTTAGAGCACACGCTATGTTCTCAGCAGAAGG < 41bp 1 0.360523167038207 1 0.258279144763947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145715 synonymous SNV . 0 12 hm5C_associated_SNPs_25917 0 0 1 0 2 Nucleus 1 0.500231648352612 1 0.999536703294776 hm5C_site_26520 DeepMRMD:1;iRNA_m5C:0.999536703294776 26521 chr10 75529157 75529157 1 + A G LIHC 75529138 + 75529118 75529158 41 ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAGT < 41bp 1 0.403078746296862 1 0.243377774953842 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529138 chr10:75529157 nonsynonymous SNV 0.996 4 40 hm5C_associated_SNPs_25920 0 0 1 0 2 Nucleus 1 0.500226266574436 1 0.999547466851127 hm5C_site_26521 DeepMRMD:1;iRNA_m5C:0.999547466851127 26522 chr10 102716232 102716232 1 + G T LIHC 102716213 + 102716193 102716233 41 ATTTGTTTTGCACAGAAACACTTTGTGCTACTCTGTGGGGC ATTTGTTTTGCACAGAAACACTTTGTGCTACTCTGTGGGTC < 41bp 1 0.139430021428751 1 0.0764674246311188 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102716213 chr10:102716232 nonsynonymous SNV 0.998 0 40 hm5C_associated_SNPs_25922 0 0 1 0 2 Nucleus 1 0.500278982219323 1 0.999442035561354 hm5C_site_26522 DeepMRMD:1;iRNA_m5C:0.999442035561354 26523 chr11 46403627 46403627 1 + T C LIHC 46403637 + 46403617 46403657 41 CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCT CGAGGCTTCCCCCTCCTCACCCTCCTCGCCCTGCTGGCGCT < 41bp 1 0.0514727734245728 1 0.0521614849567413 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403637 chr11:46403627 nonsynonymous SNV 0.887 2 11 hm5C_associated_SNPs_25923 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26523 DeepMRMD:1;iRNA_m5C:0.999536712157815 26524 chr11 46403627 46403627 1 + T C LIHC 46403638 + 46403618 46403658 41 GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC GAGGCTTCCCCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC < 41bp 1 0.464849856435536 1 0.191708087921143 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403638 chr11:46403627 nonsynonymous SNV 0.887 2 10 hm5C_associated_SNPs_25924 0 0 1 0 2 Ribosome 1 0.500231643927274 1 0.999536712145452 hm5C_site_26524 DeepMRMD:1;iRNA_m5C:0.999536712145452 26525 chr11 46403627 46403627 1 + T C LIHC 46403643 + 46403623 46403663 41 TTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC TTCCCCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC < 41bp 1 0.57118240685141 1 0.529366910457611 experiment 0.85763518629718 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403643 chr11:46403627 nonsynonymous SNV 0.887 2 5 hm5C_associated_SNPs_25925 0 0 1 0 2 Ribosome 1 0.500231643921092 0.941266179084778 0.999536712157815 hm5C_site_26525 DeepMRMD:0.941266179084778;iRNA_m5C:0.999536712157815 26526 chr12 53412615 53412615 1 + T C LIHC 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATGACGATGCGTATAGGGCGCCTCCAATTGACCGTTCCA < 41bp 1 0.402143771188876 1 0.097471684217453 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412615 nonsynonymous SNV 0.938 1 12 hm5C_associated_SNPs_25926 0 0 1 0 1 Cytosol 1 0.500231641606433 1 0.999536716787133 hm5C_site_26526 DeepMRMD:1;iRNA_m5C:0.999536716787133 26527 chr12 53412615 53412615 1 + T C LIHC 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGACGATGCGTATAGGGCGCCTCCAATTGACCGTTCCATC < 41bp 1 0.0520576527360308 1 0.078999251127243 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412615 nonsynonymous SNV 0.938 1 10 hm5C_associated_SNPs_25927 0 0 1 0 1 Cytosol 1 0.500231643918044 1 0.999536712163912 hm5C_site_26527 DeepMRMD:1;iRNA_m5C:0.999536712163912 26528 chr13 61034596 61034596 1 + C T LIHC 61034613 + 61034593 61034633 41 CACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATA CACTAAGGATGCTGCGATTACAGATGACTGATGGTCATATA < 41bp 1 0.682926527000704 1 0.663956642150879 experiment 0.634146945998592 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034613 chr13:61034596 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_25928 0 0 1 0 2 Cytosol 1 0.500231643921636 0.672086715698242 0.999536712156728 hm5C_site_26528 DeepMRMD:0.672086715698242;iRNA_m5C:0.999536712156728 26529 chr20 42331148 42331148 1 + G A LIHC 42331133 + 42331113 42331153 41 CCTCCCTCCCTGGACAGGACCCTGATGCTTGGTGTGACCTG CCTCCCTCCCTGGACAGGACCCTGATGCTTGGTGTAACCTG < 41bp 1 0.173237305339105 1 0.07310551404953 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42331133 chr20:42331148 nonsynonymous SNV 0.998 2 36 hm5C_associated_SNPs_25929 0 0 1 0 1 Cytosol 1 0.500231643925474 1 0.999536712149052 hm5C_site_26529 DeepMRMD:1;iRNA_m5C:0.999536712149052 26530 chr1 39776665 39776665 1 + A G LIHC 39776662 + 39776642 39776682 41 GGACAATGCATTAAGGATTGCAGAGCAAGAGGTAAGCCCTA GGACAATGCATTAAGGATTGCAGGGCAAGAGGTAAGCCCTA < 41bp 1 0.322229936099491 1 0.53981751203537 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39776662 chr1:39776665 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_25930 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.92036497592926 0.999536712157815 hm5C_site_26530 DeepMRMD:0.92036497592926;iRNA_m5C:0.999536712157815 26531 chr1 153745473 153745473 1 + A G LIHC 153745464 + 153745444 153745484 41 TCCACCAAGCCACCCAAGAGCCGGCGAAAAGCAGCTCTGTC TCCACCAAGCCACCCAAGAGCCGGCGAAAGGCAGCTCTGTC < 41bp 1 0.312539116767787 1 0.818607687950134 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153745464 chr1:153745473 synonymous SNV . 0 30 hm5C_associated_SNPs_25931 0 0 1 0 2 chromatin 1 0.500231643921097 0.362784624099732 0.999536712157806 hm5C_site_26531 DeepMRMD:0.362784624099732;iRNA_m5C:0.999536712157806 26532 chr2 32724731 32724731 1 + G T LIHC 32724730 + 32724710 32724750 41 TATTTCTGCCGTGATAGAATCGGTTACATTTTTAGTGCACC TATTTCTGCCGTGATAGAATCTGTTACATTTTTAGTGCACC < 41bp 1 0.0380013303053385 1 0.15670645236969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32724730 chr2:32724731 synonymous SNV . 0 22 hm5C_associated_SNPs_25932 0 0 1 0 0 Nucleus 1 0.500231643900812 1 0.999536712198377 hm5C_site_26532 DeepMRMD:1;iRNA_m5C:0.999536712198377 26533 chr2 109347341 109347341 1 + G T LIHC 109347326 + 109347306 109347346 41 GAAGAAAACACAGACAAAGCCGTTGAATGTTACAGGGTAAG GAAGAAAACACAGACAAAGCCGTTGAATGTTACAGTGTAAG < 41bp 1 0.0650877269223486 1 0.11671257019043 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347326 chr2:109347341 nonsynonymous SNV 0.982 1 36 hm5C_associated_SNPs_25933 0 0 1 0 1 Nucleus 1 0.500231818975546 1 0.999536362048908 hm5C_site_26533 DeepMRMD:1;iRNA_m5C:0.999536362048908 26534 chr5 138994189 138994189 1 + C T LIHC 138994200 + 138994180 138994220 41 GGCAAGCTACAATAATGGGGCCAGTAAGTATTCAGATTAAT GGCAAGCTATAATAATGGGGCCAGTAAGTATTCAGATTAAT < 41bp 1 0.0567843860788243 1 0.0651293396949768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2D2 ENSG00000131508 CDS Human protein_coding chr5:138994200 chr5:138994189 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_25934 0 0 1 0 1 Ribosome 1 0.500231643583858 1 0.999536712832284 hm5C_site_26534 DeepMRMD:1;iRNA_m5C:0.999536712832284 26535 chr6 116565131 116565131 1 + T C LIHC 116565147 + 116565127 116565167 41 TGGCTACTATCCAAATCCTCCACTGGTCTTATCAAGTGATG TGGCCACTATCCAAATCCTCCACTGGTCTTATCAAGTGATG < 41bp 1 0.199525447657167 1 0.0259374380111694 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116565147 chr6:116565131 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_25935 0 0 1 0 1 Cytosol 1 0.500231643920525 1 0.999536712158949 hm5C_site_26535 DeepMRMD:1;iRNA_m5C:0.999536712158949 26536 chr10 129141983 129141983 1 + G A LIHC 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAAT < 41bp 1 0.102229861672246 1 0.179188102483749 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141983 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_25937 0 0 1 0 2 Nucleus 1 0.500231643921089 1 0.999536712157822 hm5C_site_26536 DeepMRMD:1;iRNA_m5C:0.999536712157822 26537 chr10 129141983 129141983 1 + G A LIHC 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAATGCC < 41bp 1 0.44818529595263 1 0.576050937175751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141983 nonsynonymous SNV 0.997 1 37 hm5C_associated_SNPs_25938 0 0 1 0 2 Nucleus 1 0.500231639245712 0.847898125648498 0.999536721508577 hm5C_site_26537 DeepMRMD:0.847898125648498;iRNA_m5C:0.999536721508577 26538 chr10 129141983 129141983 1 + G A LIHC 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTGCAACTGGAGAATTTTTCAAATGCCAAGAGAGCCAAAA < 41bp 1 0.193915066625418 1 0.916551947593689 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141983 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_25939 0 0 1 0 2 Nucleus 1 0.500231643921361 0.166896104812622 0.999536712157277 hm5C_site_26538 DeepMRMD:0.166896104812622;iRNA_m5C:0.999536712157277 26539 chr10 129141983 129141983 1 + G A LIHC 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGGAGAATTTTTCAAATGCCAAGAGAGCCAAAATCCTTA < 41bp 1 0.0629816657355068 1 0.288446754217148 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129141983 nonsynonymous SNV 0.997 1 18 hm5C_associated_SNPs_25940 0 0 1 0 2 Nucleus 1 0.500231643903684 1 0.999536712192633 hm5C_site_26539 DeepMRMD:1;iRNA_m5C:0.999536712192633 26540 chr10 129141983 129141983 1 + G A LIHC 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGGAGAATTTTTCAAATGCCAAGAGAGCCAAAATCCTTAA < 41bp 1 0.520848847809832 1 0.327704846858978 experiment 0.958302304380336 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129141983 nonsynonymous SNV 0.997 1 17 hm5C_associated_SNPs_25941 0 0 1 0 2 Nucleus 1 0.500231643834525 1 0.99953671233095 hm5C_site_26540 DeepMRMD:1;iRNA_m5C:0.99953671233095 26541 chr10 129141983 129141983 1 + G A LIHC 129141995 + 129141975 129142015 41 TTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAG TTTTTCAAATGCCAAGAGAGCCAAAATCCTTAACAAGTAAG < 41bp 1 0.0800172782137109 1 0.280232131481171 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141995 chr10:129141983 nonsynonymous SNV 0.997 1 9 hm5C_associated_SNPs_25942 0 0 1 0 2 Nucleus 1 0.500231644090451 1 0.999536711819098 hm5C_site_26541 DeepMRMD:1;iRNA_m5C:0.999536711819098 26542 chr10 129141983 129141983 1 + G A LIHC 129142002 + 129141982 129142022 41 AGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCAT AATGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCAT < 41bp 1 0.0627927312646508 1 0.373353034257889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129142002 chr10:129141983 nonsynonymous SNV 0.997 1 2 hm5C_associated_SNPs_25943 0 0 1 0 2 Nucleus 1 0.500231643921124 1 0.999536712157752 hm5C_site_26542 DeepMRMD:1;iRNA_m5C:0.999536712157752 26543 chr10 129141983 129141983 1 + G A LIHC 129142003 + 129141983 129142023 41 GTGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCATC ATGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCATC < 41bp 1 0.212490824761914 1 0.382373303174973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129142003 chr10:129141983 nonsynonymous SNV 0.997 1 1 hm5C_associated_SNPs_25944 0 0 1 0 2 Nucleus 1 0.50023110267845 1 0.999537794643101 hm5C_site_26543 DeepMRMD:1;iRNA_m5C:0.999537794643101 26544 chr11 61725744 61725744 1 + T C LIHC 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGCT < 41bp 1 0.211441317105485 1 0.280251920223236 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725744 nonsynonymous SNV 0.999 5 40 hm5C_associated_SNPs_25945 0 0 0 1 1 chromatin 1 0.500231655318667 1 0.999536689362666 hm5C_site_26544 DeepMRMD:1;iRNA_m5C:0.999536689362666 26545 chr11 74915456 74915456 1 + T C LIHC 74915455 + 74915435 74915475 41 CTTTCCCCAGGTTCATCGGCCTCCAGTTCTTCTTCAAAACA CTTTCCCCAGGTTCATCGGCCCCCAGTTCTTCTTCAAAACA < 41bp 1 0.173179585105993 1 0.0728082656860352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74915455 chr11:74915456 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_25946 0 0 0 0 1 cytosol 1 0.500231643896684 1 0.999536712206633 hm5C_site_26545 DeepMRMD:1;iRNA_m5C:0.999536712206633 26546 chr11 122817436 122817436 1 + A G LIHC 122817446 + 122817426 122817466 41 AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA AGCCGTAGCAGTTCTGAAGGCTATCTGTTTCAACTGGAAAA < 41bp 1 0.113210554046516 1 0.0677318274974823 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817446 chr11:122817436 nonsynonymous SNV 0.988 1 11 hm5C_associated_SNPs_25947 0 0 0 0 1 exosome 1 0.500231643919591 1 0.999536712160817 hm5C_site_26546 DeepMRMD:1;iRNA_m5C:0.999536712160817 26547 chr12 107712744 107712744 1 + G T LIHC 107712763 + 107712743 107712783 41 TGGTGAGAACGCTGGAGGATCTGACGCTGGACTCGGGTTAT TTGTGAGAACGCTGGAGGATCTGACGCTGGACTCGGGTTAT < 41bp 1 0.378503564403039 1 0.348238050937653 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BTBD11 ENSG00000151136 CDS Human protein_coding chr12:107712763 chr12:107712744 synonymous SNV . 0 2 hm5C_associated_SNPs_25948 0 0 0 0 0 cytosol 1 0.500231906520812 1 0.999536186958377 hm5C_site_26547 DeepMRMD:1;iRNA_m5C:0.999536186958377 26548 chr12 124158173 124158173 1 + A G LIHC 124158178 + 124158158 124158198 41 TCAGAAGGTGTTGGAAGTGACAGTGAGGTGGAAGAGAGGTC TCAGAAGGTGTTGGAGGTGACAGTGAGGTGGAAGAGAGGTC < 41bp 1 0.388053733158726 1 0.404004871845245 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124158178 chr12:124158173 synonymous SNV . 0 16 hm5C_associated_SNPs_25949 0 0 1 0 2 Nucleus 1 0.500231135883239 1 0.999537728233523 hm5C_site_26548 DeepMRMD:1;iRNA_m5C:0.999537728233523 26549 chr16 81077293 81077293 1 + A G LIHC 81077278 + 81077258 81077298 41 AGTGAACTTTGGTAAAAGTCCATCTAATCCTTTACAAGAAC AGTGAACTTTGGTAAAAGTCCATCTAATCCTTTACGAGAAC < 41bp 1 0.169572074716923 1 0.143246293067932 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81077278 chr16:81077293 nonsynonymous SNV 0.027 1 36 hm5C_associated_SNPs_25952 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_26549 DeepMRMD:1;iRNA_m5C:0.999536712157815 26550 chrX 48369828 48369828 1 + T C LIHC 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GCTGTTCCTCTGCCGACATTCCTCCCACCGAGGCGTCTTCC < 41bp 1 0.0891736993107765 1 0.154280722141266 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369828 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_25953 0 0 0 0 2 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26550 DeepMRMD:1;iRNA_m5C:0.999536712157815 26551 chr1 228333733 228333733 1 + C T LIHC 228333718 + 228333698 228333738 41 CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCACGAGGA CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCATGAGGA < 41bp 1 0.562659191790286 1 0.219828575849533 experiment 0.874681616419427 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333718 chr1:228333733 nonsynonymous SNV 0.363 3 36 hm5C_associated_SNPs_25954 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920713 1 0.999536712158574 hm5C_site_26551 DeepMRMD:1;iRNA_m5C:0.999536712158574 26552 chr6 1390685 1390685 1 + C T LIHC 1390666 + 1390646 1390686 41 ACGAGTGCTTCATCAAGCTGCCTAAGGGCCTCGGGCGGCCC ACGAGTGCTTCATCAAGCTGCCTAAGGGCCTCGGGCGGCTC < 41bp 1 0.14484644285128 1 0.114101827144623 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1390666 chr6:1390685 nonsynonymous SNV 0.979 5 40 hm5C_associated_SNPs_25955 0 0 0 0 0 exosome 1 0.500231643918811 1 0.999536712162377 hm5C_site_26552 DeepMRMD:1;iRNA_m5C:0.999536712162377 26553 chr11 31392389 31392389 1 + C A LIHC 31392369 + 31392349 31392389 41 AGACCCATCTGCAAATATATCAGACCTAAAACAAAAATATC AGACCCATCTGCAAATATATCAGACCTAAAACAAAAATATA < 41bp 1 0.321291905297636 1 0.193133801221848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC24 ENSG00000170946 CDS Human protein_coding chr11:31392369 chr11:31392389 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_25956 0 0 1 0 1 Cytosol 1 0.500231644076101 1 0.999536711847798 hm5C_site_26553 DeepMRMD:1;iRNA_m5C:0.999536711847798 26554 chr15 57554327 57554327 1 + T C LIHC 57554318 + 57554298 57554338 41 ACTCATCGGGAAGACTCTGTCAGTCTCAATGGCAATCATTC ACTCATCGGGAAGACTCTGTCAGTCTCAACGGCAATCATTC < 41bp 1 0.252218237658883 1 0.605236947536469 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554318 chr15:57554327 synonymous SNV . 0 30 hm5C_associated_SNPs_25957 0 0 1 0 2 Cytosol 1 0.500231644008114 0.789526104927062 0.999536711983772 hm5C_site_26554 DeepMRMD:0.789526104927062;iRNA_m5C:0.999536711983772 26555 chr15 57554327 57554327 1 + T C LIHC 57554338 + 57554318 57554358 41 CAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCA CAGTCTCAACGGCAATCATTCAGTCCTGTCTAGTACAGTCA < 41bp 1 0.155489351355314 1 0.117291778326035 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554338 chr15:57554327 synonymous SNV . 0 10 hm5C_associated_SNPs_25958 0 0 1 0 2 Cytosol 1 0.500231636231924 1 0.999536727536152 hm5C_site_26555 DeepMRMD:1;iRNA_m5C:0.999536727536152 26556 chr15 57554327 57554327 1 + T C LIHC 57554343 + 57554323 57554363 41 TCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT TCAACGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT < 41bp 1 0.0993121983132052 1 0.0359518826007843 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554343 chr15:57554327 synonymous SNV . 0 5 hm5C_associated_SNPs_25959 0 0 1 0 2 Cytosol 1 0.500231862220338 1 0.999536275559324 hm5C_site_26556 DeepMRMD:1;iRNA_m5C:0.999536275559324 26557 chr15 64410404 64410404 1 + A G LIHC 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTCTCTTCCTCCTCAGGAGGCCACAAATTCTTCGAAGCCCC < 41bp 1 0.197815688496779 1 0.20588406920433 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410404 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_25960 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26557 DeepMRMD:1;iRNA_m5C:0.999536712157815 26558 chr15 64410404 64410404 1 + A G LIHC 64410409 + 64410389 64410429 41 TCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCCAGC TCTTCCTCCTCAGGAGGCCACAAATTCTTCGAAGCCCCAGC < 41bp 1 0.188510839772759 1 0.36113315820694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410409 chr15:64410404 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_25961 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26558 DeepMRMD:1;iRNA_m5C:0.999536712157815 26559 chr17 66039299 66039299 1 + G T LIHC 66039310 + 66039290 66039330 41 TGCTGTTGAGCAGATTCTTCCTACCTTAGTTCGGCTCCTGC TGCTGTTGATCAGATTCTTCCTACCTTAGTTCGGCTCCTGC < 41bp 1 0.3450693845473 1 0.428644239902496 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66039310 chr17:66039299 nonsynonymous SNV 0.970 0 10 hm5C_associated_SNPs_25962 0 0 1 0 0 Cytosol 1 0.500231595347019 1 0.999536809305962 hm5C_site_26559 DeepMRMD:1;iRNA_m5C:0.999536809305962 26560 chr2 191523984 191523984 1 + G T LIHC 191523972 + 191523952 191523992 41 TATTACAAAAAGCCAATCTACTTTCTTATTTTGATGCCTTT TATTACAAAAAGCCAATCTACTTTCTTATTTTTATGCCTTT < 41bp 1 0.0763563679856185 1 0.0474811494350433 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAB1 ENSG00000138386 CDS Human protein_coding chr2:191523972 chr2:191523984 nonsynonymous SNV 0.955 5 33 hm5C_associated_SNPs_25963 0 0 1 0 0 Cytosol 1 0.500231644002008 1 0.999536711995984 hm5C_site_26560 DeepMRMD:1;iRNA_m5C:0.999536711995984 26561 chr8 17794743 17794743 1 + C A LIHC 17794729 + 17794709 17794749 41 GAAAGTGATAAAAGAGTAACCAATGATATTTCTCCGGAGTC GAAAGTGATAAAAGAGTAACCAATGATATTTCTCAGGAGTC < 41bp 1 0.285449748535285 1 0.402147710323334 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17794729 chr8:17794743 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_25964 0 0 1 0 0 Nucleus 1 0.500231643884914 1 0.999536712230171 hm5C_site_26561 DeepMRMD:1;iRNA_m5C:0.999536712230171 26562 chr11 62557369 62557369 1 + G T LIHC 62557360 + 62557340 62557380 41 TGTCCCTGTCTCCTACAGACCTCTTCTTGGGTGAATTTGGT TGTCCCTGTCTCCTACAGACCTCTTCTTGTGTGAATTTGGT < 41bp 1 0.0859658943694628 1 0.0444935858249664 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM179B ENSG00000185475 CDS Human protein_coding chr11:62557360 chr11:62557369 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_25965 0 0 1 0 1 Ribosome 1 0.500231655257035 1 0.99953668948593 hm5C_site_26562 DeepMRMD:1;iRNA_m5C:0.99953668948593 26563 chr11 62557369 62557369 1 + G T LIHC 62557362 + 62557342 62557382 41 TCCCTGTCTCCTACAGACCTCTTCTTGGGTGAATTTGGTAT TCCCTGTCTCCTACAGACCTCTTCTTGTGTGAATTTGGTAT < 41bp 1 0.110019072082909 1 0.0729668438434601 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMEM179B ENSG00000185475 CDS Human protein_coding chr11:62557362 chr11:62557369 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_25966 0 0 1 0 1 Ribosome 1 0.500231686338035 1 0.999536627323931 hm5C_site_26563 DeepMRMD:1;iRNA_m5C:0.999536627323931 26564 chr13 28752020 28752020 1 + C A LIHC 28752016 + 28751996 28752036 41 TTTCAGATCCTCTAACATCACCTGCTTCATCCTTGTTTAAT TTTCAGATCCTCTAACATCACCTGATTCATCCTTGTTTAAT < 41bp 1 0.356424275045759 1 0.0564401745796204 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752016 chr13:28752020 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_25967 0 0 1 0 2 Ribosome 1 0.500231643921615 1 0.999536712156771 hm5C_site_26564 DeepMRMD:1;iRNA_m5C:0.999536712156771 26565 chr13 28752020 28752020 1 + C A LIHC 28752017 + 28751997 28752037 41 TTCAGATCCTCTAACATCACCTGCTTCATCCTTGTTTAATG TTCAGATCCTCTAACATCACCTGATTCATCCTTGTTTAATG < 41bp 1 0.200698314613837 1 0.0555157065391541 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752017 chr13:28752020 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_25968 0 0 1 0 2 Ribosome 1 0.500231647183816 1 0.999536705632367 hm5C_site_26565 DeepMRMD:1;iRNA_m5C:0.999536705632367 26566 chr13 28752020 28752020 1 + C A LIHC 28752023 + 28752003 28752043 41 TCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTG TCCTCTAACATCACCTGATTCATCCTTGTTTAATGACTTTG < 41bp 1 0.13681297163222 1 0.0913402736186981 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752023 chr13:28752020 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_25969 0 0 1 0 2 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_26566 DeepMRMD:1;iRNA_m5C:0.999536712157808 26567 chr13 28752020 28752020 1 + C A LIHC 28752026 + 28752006 28752046 41 TCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTG TCTAACATCACCTGATTCATCCTTGTTTAATGACTTTGGTG < 41bp 1 0.0977034898953551 1 0.109019011259079 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752026 chr13:28752020 nonsynonymous SNV 1.000 0 15 hm5C_associated_SNPs_25970 0 0 1 0 2 Ribosome 1 0.500231644706513 1 0.999536710586974 hm5C_site_26567 DeepMRMD:1;iRNA_m5C:0.999536710586974 26568 chr13 28752020 28752020 1 + C A LIHC 28752027 + 28752007 28752047 41 CTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTGC CTAACATCACCTGATTCATCCTTGTTTAATGACTTTGGTGC < 41bp 1 0.170483100805132 1 0.0606861710548401 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752027 chr13:28752020 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_25971 0 0 1 0 2 Ribosome 1 0.500490878686504 1 0.999018242626991 hm5C_site_26568 DeepMRMD:1;iRNA_m5C:0.999018242626991 26569 chr16 28845485 28845485 1 + C A LIHC 28845478 + 28845458 28845498 41 GCAGGCCAGAGTGGGCTATACAGCCCCCAGTACATCTCCTA GCAGGCCAGAGTGGGCTATACAGCCCCAAGTACATCTCCTA < 41bp 1 0.442953514002533 1 0.226183831691742 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845478 chr16:28845485 nonsynonymous SNV 0.998 2 28 hm5C_associated_SNPs_25972 0 0 1 0 1 Cytosol 1 0.500231643921527 1 0.999536712156947 hm5C_site_26569 DeepMRMD:1;iRNA_m5C:0.999536712156947 26570 chr16 50813908 50813908 1 + A G LIHC 50813901 + 50813881 50813921 41 CCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC CCTCCTTTCTATGGGGTAATCCGTTGGGTCGGTCAGCCACC < 41bp 1 0.34611244451449 1 0.210178464651108 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CYLD ENSG00000083799 CDS Human protein_coding chr16:50813901 chr16:50813908 nonsynonymous SNV 0.998 2 28 hm5C_associated_SNPs_25973 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_26570 DeepMRMD:1;iRNA_m5C:0.999536712157815 26571 chr2 32668600 32668600 1 + T C LIHC 32668612 + 32668592 32668632 41 TGGACCTGTTCTGTTGAAGGCTTTACTTGATAATATGTCAT TGGACCTGCTCTGTTGAAGGCTTTACTTGATAATATGTCAT < 41bp 1 0.0413865403683321 1 0.0878930985927582 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32668612 chr2:32668600 nonsynonymous SNV 0.997 1 9 hm5C_associated_SNPs_25974 0 0 1 0 2 Nucleus 1 0.500231643634388 1 0.999536712731224 hm5C_site_26571 DeepMRMD:1;iRNA_m5C:0.999536712731224 26572 chr3 9976551 9976551 1 + A G LIHC 9976545 + 9976525 9976565 41 GAGAGAACCATCCGGGACAACTTTGGAGGTGGAAACACTGC GAGAGAACCATCCGGGACAACTTTGGGGGTGGAAACACTGC < 41bp 1 0.114312620549392 1 0.163980185985565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9976545 chr3:9976551 synonymous SNV . 0 27 hm5C_associated_SNPs_25975 0 0 1 4 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_26572 DeepMRMD:1;iRNA_m5C:0.999536712157815 26573 chr3 183369018 183369018 1 + C A LIHC 183369020 + 183369000 183369040 41 CATGAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT CATGAAGCAAGACGGTACAACATACTTGGGAATGAAATGAT < 41bp 1 0.123688764317323 1 0.125989437103271 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183369020 chr3:183369018 nonsynonymous SNV 0.999 4 19 hm5C_associated_SNPs_25976 0 0 1 0 1 Ribosome 1 0.500232977680861 1 0.999534044638277 hm5C_site_26573 DeepMRMD:1;iRNA_m5C:0.999534044638277 26574 chr5 150027973 150027973 1 + C A LIHC 150027987 + 150027967 150028007 41 CTGTCCCAAAACCGAGAGGCCCAGCAGTCCTCACCGGCCCC CTGTCCAAAAACCGAGAGGCCCAGCAGTCCTCACCGGCCCC < 41bp 1 0.146965793232219 1 0.0846389532089233 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYNPO ENSG00000171992 CDS Human protein_coding chr5:150027987 chr5:150027973 nonsynonymous SNV 0.425 3 7 hm5C_associated_SNPs_25977 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643922552 1 0.999536712154897 hm5C_site_26574 DeepMRMD:1;iRNA_m5C:0.999536712154897 26575 chr6 131900296 131900296 1 + C A LIHC 131900277 + 131900257 131900297 41 ATGTGAAGGATTATGGGGACCTGCCCTTTGCTGACATCCCT ATGTGAAGGATTATGGGGACCTGCCCTTTGCTGACATCCAT < 41bp 1 0.39737714947621 1 0.0550163984298706 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131900277 chr6:131900296 nonsynonymous SNV 0.876 1 40 hm5C_associated_SNPs_25978 0 0 0 0 2 exosome 1 0.500231643921066 1 0.999536712157867 hm5C_site_26575 DeepMRMD:1;iRNA_m5C:0.999536712157867 26576 chr10 3176697 3176697 1 + A G LIHC 3176685 + 3176665 3176705 41 CCACCAACAGGGTGGGGCACCCTCTCCATTTGATAGAAACT CCACCAACAGGGTGGGGCACCCTCTCCATTTGGTAGAAACT < 41bp 1 0.0105231122241109 1 0.0442876219749451 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3176685 chr10:3176697 nonsynonymous SNV 0.660 5 33 hm5C_associated_SNPs_25979 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26576 DeepMRMD:1;iRNA_m5C:0.999536712157815 26577 chr11 75110602 75110602 1 + A G LIHC 75110585 + 75110565 75110605 41 TTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCAAAT TTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCGAAT < 41bp 1 0.656830924213632 1 0.513213753700256 experiment 0.686338151572737 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 CDS Human protein_coding chr11:75110585 chr11:75110602 nonsynonymous SNV 0.982 1 38 hm5C_associated_SNPs_25981 0 0 1 0 1 Cytosol 1 0.500231637101204 0.973572492599488 0.999536725797591 hm5C_site_26577 DeepMRMD:0.973572492599488;iRNA_m5C:0.999536725797591 26578 chr11 120280137 120280137 1 + G T LIHC 120280127 + 120280107 120280147 41 CTCCTCCAAGAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT CTCCTCCAAGAAGACAAAGTCTAGTTCAGATGAGAGTAGAT < 41bp 1 0.173841247179326 1 0.446900129318237 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120280127 chr11:120280137 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_25982 0 0 1 0 2 Cytosol 1 0.500231644188613 1 0.999536711622775 hm5C_site_26578 DeepMRMD:1;iRNA_m5C:0.999536711622775 26579 chr12 50452863 50452863 1 + A G LIHC 50452871 + 50452851 50452891 41 GCCAAGTCTCCAAGAATGACCTGTATCATGCTGGGGAGCTG GCCAAGTCTCCAGGAATGACCTGTATCATGCTGGGGAGCTG < 41bp 1 0.645999666499122 1 0.286311239004135 experiment 0.708000667001756 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50452871 chr12:50452863 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_25983 0 0 0 0 1 exosome 1 0.500231636469102 1 0.999536727061796 hm5C_site_26579 DeepMRMD:1;iRNA_m5C:0.999536727061796 26580 chr12 112460309 112460309 1 + G T LIHC 112460318 + 112460298 112460338 41 TTAGACCAAGGGGAGGACTTCCCAGCATCAGAGATGACACG TTAGACCAAGGTGAGGACTTCCCAGCATCAGAGATGACACG < 41bp 1 0.211633720174559 1 0.398422598838806 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ERP29 ENSG00000089248 CDS Human protein_coding chr12:112460318 chr12:112460309 synonymous SNV . 0 12 hm5C_associated_SNPs_25984 0 0 1 0 0 Ribosome 1 0.500231656886691 1 0.999536686226618 hm5C_site_26580 DeepMRMD:1;iRNA_m5C:0.999536686226618 26581 chr12 112460309 112460309 1 + G T LIHC 112460323 + 112460303 112460343 41 CCAAGGGGAGGACTTCCCAGCATCAGAGATGACACGGATCG CCAAGGTGAGGACTTCCCAGCATCAGAGATGACACGGATCG < 41bp 1 0.511904689191089 1 0.138351857662201 experiment 0.976190621617821 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ERP29 ENSG00000089248 CDS Human protein_coding chr12:112460323 chr12:112460309 synonymous SNV . 0 7 hm5C_associated_SNPs_25985 0 0 1 0 0 Ribosome 1 0.500231643920721 1 0.999536712158558 hm5C_site_26581 DeepMRMD:1;iRNA_m5C:0.999536712158558 26582 chr18 55996245 55996245 1 + G T LIHC 55996248 + 55996228 55996268 41 GACGTGTCCTCGGAGTCGGACAATAACATCAGACAGATCAA GACGTGTCCTCGGAGTCTGACAATAACATCAGACAGATCAA < 41bp 1 0.36782580924387 1 0.483042448759079 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:55996248 chr18:55996245 synonymous SNV . 0 18 hm5C_associated_SNPs_25986 0 0 1 0 1 Cytosol 1 0.500231475680173 1 0.999537048639653 hm5C_site_26582 DeepMRMD:1;iRNA_m5C:0.999537048639653 26583 chr19 46202122 46202122 1 + C T LIHC 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCCTTGCACGGTCCGCTGGTTCCATCGGC < 41bp 1 0.162553437320532 1 0.687031030654907 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202122 nonsynonymous SNV 0.140 2 17 hm5C_associated_SNPs_25987 0 0 1 0 2 chromatin 1 0.500231643921093 0.625937938690186 0.999536712157814 hm5C_site_26583 DeepMRMD:0.625937938690186;iRNA_m5C:0.999536712157814 26584 chr1 230822734 230822734 1 + G T LIHC 230822730 + 230822710 230822750 41 TCCCAAGGAGATCAAGAAACCTTTGGTAACTGGTAGCAAAG TCCCAAGGAGATCAAGAAACCTTTTGTAACTGGTAGCAAAG < 41bp 1 0.157102488368811 1 0.0466184318065643 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COG2 ENSG00000135775 CDS Human protein_coding chr1:230822730 chr1:230822734 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_25988 0 0 0 0 1 Cytosol 1 0.500231643920868 1 0.999536712158264 hm5C_site_26584 DeepMRMD:1;iRNA_m5C:0.999536712158264 26585 chr11 45948313 45948313 1 + C T LIHC 45948298 + 45948278 45948318 41 CACAACTGGACGAGGAAGACCCCTGCTTTGAGTTCCGGCAG CACAACTGGACGAGGAAGACCCCTGCTTTGAGTTCTGGCAG < 41bp 1 0.199344061006853 1 0.395888268947601 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45948298 chr11:45948313 nonsynonymous SNV 0.994 3 36 hm5C_associated_SNPs_25989 0 0 0 0 1 chromatin 1 0.500231644441676 1 0.999536711116649 hm5C_site_26585 DeepMRMD:1;iRNA_m5C:0.999536711116649 26586 chr4 39747379 39747379 1 + A T LIHC 39747383 + 39747363 39747403 41 TTTTTTTAGGAGGAAGATACCAACTAGAGATAAAAATACCA TTTTTTTAGGAGGAAGTTACCAACTAGAGATAAAAATACCA < 41bp 1 0.385332114161196 1 0.643512308597565 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2K ENSG00000078140 CDS Human protein_coding chr4:39747383 chr4:39747379 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_25990 0 0 1 0 2 Cytosol 1 0.500231643950015 0.71297538280487 0.99953671209997 hm5C_site_26586 DeepMRMD:0.71297538280487;iRNA_m5C:0.99953671209997 26587 chr17 1733407 1733407 1 + A G LIHC 1733413 + 1733393 1733433 41 CGGCCAACTGAGCGAGGGGGCCATTGCGGTGAGGAGGTGCC CGGCCAACTGAGCGGGGGGGCCATTGCGGTGAGGAGGTGCC < 41bp 1 0.123906440870855 1 0.279147386550903 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1733413 chr17:1733407 nonsynonymous SNV 0.997 2 15 hm5C_associated_SNPs_25991 0 0 1 0 1 chromatin 1 0.500231644707661 1 0.999536710584679 hm5C_site_26587 DeepMRMD:1;iRNA_m5C:0.999536710584679 26588 chr1 112305374 112305374 1 + A G LIHC 112305377 + 112305357 112305397 41 TGGATTGGGAGACATACATGCATCGGATTGGGAGAGCTGGC TGGATTGGGAGACATACGTGCATCGGATTGGGAGAGCTGGC < 41bp 1 0.382861008611311 1 0.116467028856277 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305377 chr1:112305374 nonsynonymous SNV 0.998 2 18 hm5C_associated_SNPs_25992 0 0 1 0 2 Ribosome 1 0.500231643044363 1 0.999536713911275 hm5C_site_26588 DeepMRMD:1;iRNA_m5C:0.999536713911275 26589 chr1 220960447 220960447 1 + A G LIHC 220960430 + 220960410 220960450 41 CGCGCATGGCCCACGCGGCGCCGGCGGCTGCTGCAGCAGGT CGCGCATGGCCCACGCGGCGCCGGCGGCTGCTGCAGCGGGT < 41bp 1 0.579916341489158 1 0.406368345022202 experiment 0.840167317021683 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220960430 chr1:220960447 nonsynonymous SNV 0.988 0 38 hm5C_associated_SNPs_25993 0 0 1 0 0 Ribosome 1 0.500231643646765 1 0.999536712706469 hm5C_site_26589 DeepMRMD:1;iRNA_m5C:0.999536712706469 26590 chr9 125772702 125772702 1 + G C LIHC 125772700 + 125772680 125772720 41 TGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGAGGAAAA TGTATGCTTGGAAAGTGAATCACAAAGAGAGAGGAGGAAAA < 41bp 1 0.564101898657365 1 0.295960932970047 experiment 0.87179620268527 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125772700 chr9:125772702 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_25994 0 0 1 0 1 Nucleus 1 0.500231643973382 1 0.999536712053237 hm5C_site_26590 DeepMRMD:1;iRNA_m5C:0.999536712053237 26591 chr10 17278320 17278320 1 + T C LIHC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCCTCTGGCTGATACCCACTCAAAA < 41bp 1 0.223275602314951 1 0.597391605377197 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278320 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_25995 0 0 1 0 2 Ribosome 1 0.500231643868853 0.805216789245606 0.999536712262293 hm5C_site_26591 DeepMRMD:0.805216789245606;iRNA_m5C:0.999536712262293 26592 chr11 118939942 118939942 1 + T C LIHC 118939940 + 118939920 118939960 41 GATCTGGTTCTTGCCACGTTCCTACAGCTTACAGGCTTCCA GATCTGGTTCTTGCCACGTTCCCACAGCTTACAGGCTTCCA < 41bp 1 0.142500416881349 1 0.468229621648788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS11 ENSG00000160695 splicing Human protein_coding chr11:118939940 chr11:118939942 . 0.995 1 23 hm5C_associated_SNPs_25996 0 0 0 0 1 cytosol 1 0.500231643192188 1 0.999536713615623 hm5C_site_26592 DeepMRMD:1;iRNA_m5C:0.999536713615623 26593 chrX 129173222 129173222 1 + T C LIHC 129173210 + 129173190 129173230 41 GGCTACCTACTCGGGTCAGACAGCCATGAAGCTGGCCAGCA GGCTACCTACTCGGGTCAGACAGCCATGAAGCCGGCCAGCA < 41bp 1 0.388851005969737 1 0.608536601066589 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129173210 chrX:129173222 nonsynonymous SNV 0.995 3 33 hm5C_associated_SNPs_25997 0 0 0 0 1 Cytosol 1 0.500231643921091 0.782926797866822 0.999536712157817 hm5C_site_26593 DeepMRMD:0.782926797866822;iRNA_m5C:0.999536712157817 26594 chr19 8321909 8321909 1 + G A LIHC 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTTCTCCTACAGTGCCAACCTGCTGCACATTGGCTCTCTG < 41bp 1 0.445347831291288 1 0.424281984567642 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321909 nonsynonymous SNV 0.988 3 28 hm5C_associated_SNPs_26001 0 0 0 0 2 chromatin 1 0.500231643278632 1 0.999536713442736 hm5C_site_26594 DeepMRMD:1;iRNA_m5C:0.999536713442736 26595 chr7 30673470 30673470 1 + G T LIHC 30673480 + 30673460 30673500 41 AGACAATCGAGGAATGAGGACAATTTTGACAACTTTTGACC AGACAATCGATGAATGAGGACAATTTTGACAACTTTTGACC < 41bp 1 0.162005583200922 1 0.0487353503704071 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GARS ENSG00000106105 CDS Human protein_coding chr7:30673480 chr7:30673470 nonsynonymous SNV 0.967 1 11 hm5C_associated_SNPs_26002 0 0 1 0 0 Cytosol 1 0.500231643953015 1 0.999536712093969 hm5C_site_26595 DeepMRMD:1;iRNA_m5C:0.999536712093969 26596 chr17 70119055 70119055 1 + C T LIHC 70119073 + 70119053 70119093 41 GCCGACTCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCA GCTGACTCGCCACACTCCTCCTCCGGCATGAGCGAGGTGCA < 41bp 1 0.663809065037093 1 0.798397421836853 experiment 0.672381869925815 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SOX9 ENSG00000125398 CDS Human protein_coding chr17:70119073 chr17:70119055 synonymous SNV . 0 3 hm5C_associated_SNPs_26003 0 0 1 0 1 Cytosol 1 0.500231745439812 0.403205156326294 0.999536509120375 hm5C_site_26596 DeepMRMD:0.403205156326294;iRNA_m5C:0.999536509120375 26597 chr17 39975544 39975544 1 + A G LIHC 39975559 + 39975539 39975579 41 CAGCTAGAGACGCTGGAGCTCCCCCCCGGCTGTGTCCGCAG CAGCTGGAGACGCTGGAGCTCCCCCCCGGCTGTGTCCGCAG < 41bp 1 0.211529631720767 1 0.224257677793503 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39975559 chr17:39975544 synonymous SNV . 0 6 hm5C_associated_SNPs_26004 0 0 1 0 0 Nucleus 1 0.500231643953598 1 0.999536712092805 hm5C_site_26597 DeepMRMD:1;iRNA_m5C:0.999536712092805 26598 chr2 11300640 11300640 1 + G C LIHC 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT CGCTCACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT < 41bp 1 0.162712788654952 1 0.219079583883286 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300640 synonymous SNV . 0 5 hm5C_associated_SNPs_26005 0 0 1 0 2 Ribosome 1 0.500231633513932 1 0.999536732972135 hm5C_site_26598 DeepMRMD:1;iRNA_m5C:0.999536732972135 26599 chr2 220503556 220503556 1 + C A LIHC 220503571 + 220503551 220503591 41 CTCGTCCTCATCCTGATCTTCATGGAGACACAGATCACGGC CTCGTACTCATCCTGATCTTCATGGAGACACAGATCACGGC < 41bp 1 0.406066064974948 1 0.703495264053345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503571 chr2:220503556 synonymous SNV . 0 6 hm5C_associated_SNPs_26006 0 0 0 0 1 Cytosol 1 0.500231643790355 0.59300947189331 0.999536712419291 hm5C_site_26599 DeepMRMD:0.59300947189331;iRNA_m5C:0.999536712419291 26600 chr10 17271663 17271663 1 + A T LIHC 17271653 + 17271633 17271673 41 GGAGCAGCGTGCCCGGGGTGCGGCTCCTGCAGGACTCGGTG GGAGCAGCGTGCCCGGGGTGCGGCTCCTGCTGGACTCGGTG < 41bp 1 0.585462514589563 1 0.450326412916183 experiment 0.829074970820874 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271653 chr10:17271663 nonsynonymous SNV 0.998 1 31 hm5C_associated_SNPs_26007 0 0 1 0 0 Ribosome 1 0.50023164392057 1 0.999536712158859 hm5C_site_26600 DeepMRMD:1;iRNA_m5C:0.999536712158859 26601 chr10 17271663 17271663 1 + A T LIHC 17271656 + 17271636 17271676 41 GCAGCGTGCCCGGGGTGCGGCTCCTGCAGGACTCGGTGGAC GCAGCGTGCCCGGGGTGCGGCTCCTGCTGGACTCGGTGGAC < 41bp 1 0.694948066949469 1 0.709021091461182 experiment 0.610103866101061 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271656 chr10:17271663 nonsynonymous SNV 0.998 1 28 hm5C_associated_SNPs_26008 0 0 1 0 0 Ribosome 1 0.500231644363638 0.581957817077636 0.999536711272724 hm5C_site_26601 DeepMRMD:0.581957817077636;iRNA_m5C:0.999536711272724 26602 chr10 17271663 17271663 1 + A T LIHC 17271658 + 17271638 17271678 41 AGCGTGCCCGGGGTGCGGCTCCTGCAGGACTCGGTGGACTT AGCGTGCCCGGGGTGCGGCTCCTGCTGGACTCGGTGGACTT < 41bp 1 0.264552511597895 1 0.14065283536911 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271658 chr10:17271663 nonsynonymous SNV 0.998 1 26 hm5C_associated_SNPs_26009 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_26602 DeepMRMD:1;iRNA_m5C:0.999536712157815 26603 chrX 153035892 153035892 1 + C A LIHC 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGAGG < 41bp 1 0.0246440344247023 1 0.0782715678215027 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035892 nonsynonymous SNV 0.717 0 39 hm5C_associated_SNPs_26011 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643916476 1 0.999536712167047 hm5C_site_26603 DeepMRMD:1;iRNA_m5C:0.999536712167047 26604 chr14 64914955 64914955 1 + A G LIHC 64914938 + 64914918 64914958 41 CACTGTTGTTTTTACAGAACCTGGAGCTGGTTGAAAAAGGC CACTGTTGTTTTTACAGAACCTGGAGCTGGTTGAAAAGGGC < 41bp 1 0.560747553498434 1 0.536152720451355 experiment 0.878504893003133 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64914938 chr14:64914955 synonymous SNV . 0 38 hm5C_associated_SNPs_26012 0 0 1 0 2 Nucleus 1 0.500231326845391 0.92769455909729 0.999537346309219 hm5C_site_26604 DeepMRMD:0.92769455909729;iRNA_m5C:0.999537346309219 26605 chr5 156816275 156816275 1 + C T LIHC 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCTTGAC < 41bp 1 0.265392552219698 1 0.395585149526596 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816275 synonymous SNV . 0 37 hm5C_associated_SNPs_26013 0 0 1 0 1 Cytosol 1 0.500230823300885 1 0.999538353398229 hm5C_site_26605 DeepMRMD:1;iRNA_m5C:0.999538353398229 26606 chr10 75551817 75551817 1 + G T LIHC 75551836 + 75551816 75551856 41 TGCTGGGCCCGGGCCCTGCCCTCTCGGCCAGGTGCCTCCCG TTCTGGGCCCGGGCCCTGCCCTCTCGGCCAGGTGCCTCCCG < 41bp 1 0.397237204076561 1 0.19927716255188 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75551836 chr10:75551817 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_26014 0 0 1 0 0 Cytosol 1 0.500231643923601 1 0.999536712152798 hm5C_site_26606 DeepMRMD:1;iRNA_m5C:0.999536712152798 26607 chr7 142458511 142458511 1 + G T LIHC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGTTGGCTC < 41bp 1 0.0740302532020083 1 0.0325438976287842 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458511 nonsynonymous SNV 0.013 5 35 hm5C_associated_SNPs_26016 1 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26607 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 26608 chr7 142458511 142458511 1 + G T LIHC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCACTTCTGTGTTGGCTCCCT < 41bp 1 0.0737463605066061 1 0.0945606231689453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458511 nonsynonymous SNV 0.013 5 32 hm5C_associated_SNPs_26017 1 0 0 0 2 Cytosol 1 0.50023164392161 1 0.999536712156779 hm5C_site_26608 DeepMRMD:1;iRNA_m5C:0.999536712156779 not specified not specified 26609 chr7 142458511 142458511 1 + G T LIHC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGTGTTGGCTCCCTC < 41bp 1 0.178383702023722 1 0.269904494285583 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458511 nonsynonymous SNV 0.013 5 31 hm5C_associated_SNPs_26018 1 0 0 0 2 Cytosol 1 0.500231615999338 1 0.999536768001323 hm5C_site_26609 DeepMRMD:1;iRNA_m5C:0.999536768001323 not specified not specified 26610 chr7 142458511 142458511 1 + G T LIHC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGTTGGCTCCCTCAT < 41bp 1 0.306282309378706 1 0.316977828741074 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458511 nonsynonymous SNV 0.013 5 29 hm5C_associated_SNPs_26019 1 0 0 0 2 Cytosol 1 0.500231644868816 1 0.999536710262368 hm5C_site_26610 DeepMRMD:1;iRNA_m5C:0.999536710262368 not specified not specified 26611 chr7 142458511 142458511 1 + G T LIHC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGTTGGCTCCCTCATCAA < 41bp 1 0.576352145564096 1 0.122177720069885 experiment 0.847295708871807 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458511 nonsynonymous SNV 0.013 5 26 hm5C_associated_SNPs_26020 1 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_26611 DeepMRMD:1;iRNA_m5C:0.999536712157816 not specified not specified 26612 chr7 142458511 142458511 1 + G T LIHC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGTTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.324371108975394 1 0.0832276940345764 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458511 nonsynonymous SNV 0.013 5 17 hm5C_associated_SNPs_26021 1 0 0 0 2 Cytosol 1 0.500231643986643 1 0.999536712026715 hm5C_site_26612 DeepMRMD:1;iRNA_m5C:0.999536712026715 not specified not specified 26613 chr7 142458511 142458511 1 + G T LIHC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGTTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0847178915732525 1 0.0338574349880219 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458511 nonsynonymous SNV 0.013 5 15 hm5C_associated_SNPs_26022 1 0 0 0 2 Cytosol 1 0.500231636937181 1 0.999536726125638 hm5C_site_26613 DeepMRMD:1;iRNA_m5C:0.999536726125638 not specified not specified 26614 chr7 142458511 142458511 1 + G T LIHC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGTTGGCTCCCTCATCAACGAACAGTGGGT < 41bp 1 0.122035389770522 1 0.0499318838119507 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458511 nonsynonymous SNV 0.013 5 14 hm5C_associated_SNPs_26023 1 0 0 0 2 Cytosol 1 0.500230005087856 1 0.999539989824289 hm5C_site_26614 DeepMRMD:1;iRNA_m5C:0.999539989824289 not specified not specified 26615 chr7 142458511 142458511 1 + G T LIHC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGTTGGCTCCCTCATCAACGAACAGTGGGTG < 41bp 1 0.325936030844151 1 0.138920366764069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458511 nonsynonymous SNV 0.013 5 13 hm5C_associated_SNPs_26024 1 0 0 0 2 Cytosol 1 0.500231643113175 1 0.99953671377365 hm5C_site_26615 DeepMRMD:1;iRNA_m5C:0.99953671377365 not specified not specified 26616 chr7 142458511 142458511 1 + G T LIHC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGTTGGCTCCCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.453226006303722 1 0.675046443939209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458511 nonsynonymous SNV 0.013 5 11 hm5C_associated_SNPs_26025 1 0 0 0 2 Cytosol 1 0.500231885867011 0.649907112121582 0.999536228265979 hm5C_site_26616 DeepMRMD:0.649907112121582;iRNA_m5C:0.999536228265979 not specified not specified 26617 chr7 142458511 142458511 1 + G T LIHC 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGTTGGCTCCCTCATCAACGAACAGTGGGTGGTATC < 41bp 1 0.672342011214285 1 0.50632256269455 experiment 0.655315977571431 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458511 nonsynonymous SNV 0.013 5 8 hm5C_associated_SNPs_26026 1 0 0 0 2 Cytosol 1 0.500231643921092 0.9873548746109 0.999536712157815 hm5C_site_26617 DeepMRMD:0.9873548746109;iRNA_m5C:0.999536712157815 not specified not specified 26618 chr7 142458511 142458511 1 + G T LIHC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGTTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.354280748239536 1 0.436285853385925 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458511 nonsynonymous SNV 0.013 5 5 hm5C_associated_SNPs_26027 1 0 0 0 2 Cytosol 1 0.500231643327793 1 0.999536713344415 hm5C_site_26618 DeepMRMD:1;iRNA_m5C:0.999536713344415 not specified not specified 26619 chr7 142458511 142458511 1 + G T LIHC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC TTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.449965835771491 1 0.259411334991455 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458511 nonsynonymous SNV 0.013 5 1 hm5C_associated_SNPs_26028 1 0 0 0 2 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_26619 DeepMRMD:1;iRNA_m5C:0.99953671215782 not specified not specified 26620 chr2 120005515 120005515 1 + C A LIHC 120005510 + 120005490 120005530 41 GCCAGAACAAGTTCTTCAAGCTGCCCGTGTCCGTGGTCAAC GCCAGAACAAGTTCTTCAAGCTGCCAGTGTCCGTGGTCAAC < 41bp 1 0.332931659632241 1 0.0264078378677368 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120005510 chr2:120005515 synonymous SNV . 0 26 hm5C_associated_SNPs_26029 0 0 1 0 0 Ribosome 1 0.500231641027707 1 0.999536717944585 hm5C_site_26620 DeepMRMD:1;iRNA_m5C:0.999536717944585 26621 chr10 75532078 75532078 1 + C T LIHC 75532074 + 75532054 75532094 41 CGGTGCTGGCCGAGGGGGCGCCGGCTGCCGGAGTGGACATG CGGTGCTGGCCGAGGGGGCGCCGGTTGCCGGAGTGGACATG < 41bp 1 0.576011848191717 1 0.254964590072632 experiment 0.847976303616566 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FUT11 ENSG00000267964 CDS Human other chr10:75532074 chr10:75532078 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_26030 0 0 1 0 0 Endoplasmic reticulum 1 0.500231516428627 1 0.999536967142745 hm5C_site_26621 DeepMRMD:1;iRNA_m5C:0.999536967142745 26622 chr10 75532078 75532078 1 + C T LIHC 75532075 + 75532055 75532095 41 GGTGCTGGCCGAGGGGGCGCCGGCTGCCGGAGTGGACATGG GGTGCTGGCCGAGGGGGCGCCGGTTGCCGGAGTGGACATGG < 41bp 1 0.669933057022709 1 0.416467994451523 experiment 0.660133885954582 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FUT11 ENSG00000267964 CDS Human other chr10:75532075 chr10:75532078 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_26031 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_26622 DeepMRMD:1;iRNA_m5C:0.999536712157815 26623 chr6 160494391 160494391 1 + G A LIHC 160494408 + 160494388 160494428 41 TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT TTCATGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT < 41bp 1 0.32778202009216 1 0.871079325675964 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494408 chr6:160494391 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_26032 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164286233 0.257841348648072 0.99953671427534 hm5C_site_26623 DeepMRMD:0.257841348648072;iRNA_m5C:0.99953671427534 26624 chr7 2406209 2406209 1 + A C LIHC 2406225 + 2406205 2406245 41 GCTTAGCATCTATGAAACTCCTGTAAGTGGCCTCAGTGATG GCTTCGCATCTATGAAACTCCTGTAAGTGGCCTCAGTGATG < 41bp 1 0.473738594234687 1 0.0882507562637329 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2406225 chr7:2406209 nonsynonymous SNV 0.997 4 5 hm5C_associated_SNPs_26033 0 0 1 0 2 Ribosome 1 0.499330110323747 1 1 hm5C_site_26624 DeepMRMD:1;iRNA_m5C:1 26625 chr1 22336295 22336295 1 + T C LIHC 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCACCT < 41bp 1 0.0527364476206618 1 0.0181249976158142 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336295 nonsynonymous SNV 0.004 1 39 hm5C_associated_SNPs_26034 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643887249 1 0.999536712225503 hm5C_site_26625 DeepMRMD:1;iRNA_m5C:0.999536712225503 26626 chr1 22336295 22336295 1 + T C LIHC 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCACCTG < 41bp 1 0.357659976597624 1 0.0747554302215576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336295 nonsynonymous SNV 0.004 1 38 hm5C_associated_SNPs_26035 0 0 0 0 1 Endoplasmic reticulum 1 0.500234187582997 1 0.999531624834005 hm5C_site_26626 DeepMRMD:1;iRNA_m5C:0.999531624834005 26627 chr1 22336295 22336295 1 + T C LIHC 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGCCTTTGGCTGCAACTTCACCTGGAAGCCCAC < 41bp 1 0.23222394435883 1 0.09677854180336 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336295 nonsynonymous SNV 0.004 1 29 hm5C_associated_SNPs_26037 0 0 0 0 1 Endoplasmic reticulum 1 0.500231727707 1 0.999536544586 hm5C_site_26627 DeepMRMD:1;iRNA_m5C:0.999536544586 26628 chr1 22336295 22336295 1 + T C LIHC 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGGCTGCAACTTCACCTGGAAGCCCACGGT < 41bp 1 0.513718205634294 1 0.795022964477539 experiment 0.972563588731411 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336295 nonsynonymous SNV 0.004 1 26 hm5C_associated_SNPs_26038 0 0 0 0 1 Endoplasmic reticulum 1 0.500231650276529 0.409954071044922 0.999536699446942 hm5C_site_26628 DeepMRMD:0.409954071044922;iRNA_m5C:0.999536699446942 26629 chr1 22336295 22336295 1 + T C LIHC 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGGCTGCAACTTCACCTGGAAGCCCACGGTGTT < 41bp 1 0.581414191994404 1 0.436525017023087 experiment 0.837171616011193 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336295 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_26039 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_26629 DeepMRMD:1;iRNA_m5C:0.999536712157815 26630 chr1 22336295 22336295 1 + T C LIHC 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCACCTGGAAGCCCACGGTGTTCACTCGAGTC < 41bp 1 0.195392583361045 1 0.241387546062469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336295 nonsynonymous SNV 0.004 1 13 hm5C_associated_SNPs_26040 0 0 0 0 1 Endoplasmic reticulum 1 0.500231147891498 1 0.999537704217003 hm5C_site_26630 DeepMRMD:1;iRNA_m5C:0.999537704217003 26631 chr1 22336295 22336295 1 + T C LIHC 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCACCTGGAAGCCCACGGTGTTCACTCGAGTCT < 41bp 1 0.356320515871221 1 0.209578961133957 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336295 nonsynonymous SNV 0.004 1 12 hm5C_associated_SNPs_26041 0 0 0 0 1 Endoplasmic reticulum 1 0.50023624343335 1 0.9995275131333 hm5C_site_26631 DeepMRMD:1;iRNA_m5C:0.9995275131333 26632 chr1 22336295 22336295 1 + T C LIHC 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCACCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG < 41bp 1 0.419974294673769 1 0.256019443273544 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336295 nonsynonymous SNV 0.004 1 9 hm5C_associated_SNPs_26043 0 0 0 0 1 Endoplasmic reticulum 1 0.500231628447434 1 0.999536743105132 hm5C_site_26632 DeepMRMD:1;iRNA_m5C:0.999536743105132 26633 chr1 22336295 22336295 1 + T C LIHC 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ACCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT < 41bp 1 0.38540360596212 1 0.0139630734920502 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336295 nonsynonymous SNV 0.004 1 2 hm5C_associated_SNPs_26044 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643924387 1 0.999536712151226 hm5C_site_26633 DeepMRMD:1;iRNA_m5C:0.999536712151226 26634 chr17 6920313 6920313 1 + A C LIHC 6920326 + 6920306 6920346 41 CCAGCTAAGAAACTCAACTTCGACCAGGGTAGGAGTCCTCC CCAGCTACGAAACTCAACTTCGACCAGGGTAGGAGTCCTCC < 41bp 1 0.279725719552511 1 0.0595179796218872 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6920326 chr17:6920313 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_26045 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26634 DeepMRMD:1;iRNA_m5C:0.999536712157815 26635 chr11 58347078 58347078 1 + G A LIHC 58347094 + 58347074 58347114 41 GCAAGAAGAGTCCGCGACTCCTGTGAGTAACAGTCTTTCAG GCAAAAAGAGTCCGCGACTCCTGTGAGTAACAGTCTTTCAG < 41bp 1 0.697695365015781 1 0.145689100027084 experiment 0.604609269968438 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58347094 chr11:58347078 synonymous SNV . 0 5 hm5C_associated_SNPs_26046 0 0 1 0 1 chromatin 1 0.500231643921168 1 0.999536712157663 hm5C_site_26635 DeepMRMD:1;iRNA_m5C:0.999536712157663 26636 chr22 24583365 24583365 1 + G T LIHC 24583360 + 24583340 24583380 41 GACGACTTCACCCTGCACAGCGGGCGCGTCCTGCCCCCAGG GACGACTTCACCCTGCACAGCGGGCTCGTCCTGCCCCCAGG < 41bp 1 0.582156707247543 1 0.550327181816101 experiment 0.835686585504914 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24583360 chr22:24583365 nonsynonymous SNV 0.003 0 26 hm5C_associated_SNPs_26047 0 0 0 0 1 Exosome 1 0.500231643921093 0.899345636367798 0.999536712157814 hm5C_site_26636 DeepMRMD:0.899345636367798;iRNA_m5C:0.999536712157814 26637 chr5 53815382 53815382 1 + G T LIHC 53815367 + 53815347 53815387 41 TAGCGCTGTATCAGGGGCATCTGGCTAACTTCCCGGACATC TAGCGCTGTATCAGGGGCATCTGGCTAACTTCCCGTACATC < 41bp 1 0.340657556242346 1 0.383301049470901 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815367 chr5:53815382 nonsynonymous SNV 0.994 4 36 hm5C_associated_SNPs_26048 0 0 1 0 1 chromatin 1 0.500231644003953 1 0.999536711992094 hm5C_site_26637 DeepMRMD:1;iRNA_m5C:0.999536711992094 26638 chr12 112910827 112910827 1 + A G LIHC 112910843 + 112910823 112910863 41 AGATATAAAAACATCCTGCCCTGTAAGTATCAATATTCCGC AGATGTAAAAACATCCTGCCCTGTAAGTATCAATATTCCGC < 41bp 1 0.298870273480415 1 0.0473556518554688 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112910843 chr12:112910827 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_26049 6 0 0 0 2 Ribosome 1 0.500231647187306 1 0.999536705625388 hm5C_site_26638 DeepMRMD:1;iRNA_m5C:0.999536705625388 LEOPARD syndrome 1 LEOPARD syndrome 1 26639 chr17 73738729 73738729 1 + T A LIHC 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGACGTACGGGTGCCCCTCTTTAACCGGCCTGAG < 41bp 1 0.148286413810755 1 0.0314697623252869 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738729 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_26050 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26639 DeepMRMD:1;iRNA_m5C:0.999536712157815 26640 chr17 73738730 73738730 1 + C G LIHC 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGACGTACGGGTGCCCCTCTTTATGCGGCCTGAG < 41bp 1 0.125540711995494 1 0.0225731730461121 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738730 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_26051 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26640 DeepMRMD:1;iRNA_m5C:0.999536712157815 26641 chr10 102763425 102763425 1 + C T LIHC 102763411 + 102763391 102763431 41 TGACGCAGCTGTTTGGGGGCCCTGCCTCCTCCTCCTCCTCT TGACGCAGCTGTTTGGGGGCCCTGCCTCCTCCTCTTCCTCT < 41bp 1 0.0470255735758657 1 0.0866979360580444 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102763411 chr10:102763425 synonymous SNV . 0 35 hm5C_associated_SNPs_26052 0 0 1 0 0 Ribosome 1 0.500231643954023 1 0.999536712091953 hm5C_site_26641 DeepMRMD:1;iRNA_m5C:0.999536712091953 26642 chr10 102763425 102763425 1 + C T LIHC 102763412 + 102763392 102763432 41 GACGCAGCTGTTTGGGGGCCCTGCCTCCTCCTCCTCCTCTT GACGCAGCTGTTTGGGGGCCCTGCCTCCTCCTCTTCCTCTT < 41bp 1 0.357008765608713 1 0.219184249639511 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102763412 chr10:102763425 synonymous SNV . 0 34 hm5C_associated_SNPs_26053 0 0 1 0 0 Ribosome 1 0.500231645483308 1 0.999536709033384 hm5C_site_26642 DeepMRMD:1;iRNA_m5C:0.999536709033384 26643 chr15 90159653 90159653 1 + A T LIHC 90159641 + 90159621 90159661 41 GTGTTTACATTTTAGGTTATCACAAACTGCTGACTAAGAGT GTGTTTACATTTTAGGTTATCACAAACTGCTGTCTAAGAGT < 41bp 1 0.35266602582061 1 0.320526361465454 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TICRR ENSG00000140534 CDS Human protein_coding chr15:90159641 chr15:90159653 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_26054 0 0 1 0 2 chromatin 1 0.500231643921075 1 0.999536712157849 hm5C_site_26643 DeepMRMD:1;iRNA_m5C:0.999536712157849 26644 chr1 161132173 161132173 1 + C T LIHC 161132159 + 161132139 161132179 41 AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGCTCACTGAA AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGCTTACTGAA < 41bp 1 0.434241509998672 1 0.739577114582062 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161132159 chr1:161132173 synonymous SNV . 0 35 hm5C_associated_SNPs_26056 0 0 1 0 1 Cytosol 1 0.500231643921092 0.520845770835876 0.999536712157817 hm5C_site_26644 DeepMRMD:0.520845770835876;iRNA_m5C:0.999536712157817 26645 chr7 142460286 142460286 1 + C T LIHC 142460282 + 142460262 142460302 41 TCTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGC TCTCTTCCTGATCCTCACAGCCGATTACCCAGACGAGCTGC < 41bp 1 0.156840135179502 1 0.201170921325684 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460282 chr7:142460286 synonymous SNV . 0 25 hm5C_associated_SNPs_26057 0 0 0 0 1 Cytosol 1 0.500231643919453 1 0.999536712161094 hm5C_site_26645 DeepMRMD:1;iRNA_m5C:0.999536712161094 26646 chr7 142460286 142460286 1 + C T LIHC 142460283 + 142460263 142460303 41 CTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCA CTCTTCCTGATCCTCACAGCCGATTACCCAGACGAGCTGCA < 41bp 1 0.0849266471324314 1 0.0910077691078186 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460283 chr7:142460286 synonymous SNV . 0 24 hm5C_associated_SNPs_26058 0 0 0 0 1 Cytosol 1 0.500231643921071 1 0.999536712157858 hm5C_site_26646 DeepMRMD:1;iRNA_m5C:0.999536712157858 26647 chr7 142460286 142460286 1 + C T LIHC 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGATTACCCAGACGAGCTGCAGTGCCT < 41bp 1 0.182333024657638 1 0.280490577220917 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460286 synonymous SNV . 0 18 hm5C_associated_SNPs_26059 0 0 0 0 1 Cytosol 1 0.500231656889849 1 0.999536686220301 hm5C_site_26647 DeepMRMD:1;iRNA_m5C:0.999536686220301 26648 chr7 142460286 142460286 1 + C T LIHC 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGATTACCCAGACGAGCTGCAGTGCCTG < 41bp 1 0.475470031943087 1 0.277167230844498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460286 synonymous SNV . 0 17 hm5C_associated_SNPs_26060 0 0 0 0 1 Cytosol 1 0.500231668266288 1 0.999536663467424 hm5C_site_26648 DeepMRMD:1;iRNA_m5C:0.999536663467424 26649 chr7 142460286 142460286 1 + C T LIHC 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGATTACCCAGACGAGCTGCAGTGCCTGG < 41bp 1 0.476460133541336 1 0.422100007534027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460286 synonymous SNV . 0 16 hm5C_associated_SNPs_26061 0 0 0 0 1 Cytosol 1 0.500231640610132 1 0.999536718779736 hm5C_site_26649 DeepMRMD:1;iRNA_m5C:0.999536718779736 26650 chr7 142460286 142460286 1 + C T LIHC 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGATTACCCAGACGAGCTGCAGTGCCTGGATGC < 41bp 1 0.345412881289912 1 0.311477541923523 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460286 synonymous SNV . 0 12 hm5C_associated_SNPs_26062 0 0 0 0 1 Cytosol 1 0.500228044763579 1 0.999543910472842 hm5C_site_26650 DeepMRMD:1;iRNA_m5C:0.999543910472842 26651 chr7 142460286 142460286 1 + C T LIHC 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGATTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT < 41bp 1 0.693299365665844 1 0.148254662752151 experiment 0.613401268668311 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460286 synonymous SNV . 0 8 hm5C_associated_SNPs_26063 0 0 0 0 1 Cytosol 1 0.500231643879576 1 0.999536712240849 hm5C_site_26651 DeepMRMD:1;iRNA_m5C:0.999536712240849 26652 chr7 142460286 142460286 1 + C T LIHC 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGATTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG < 41bp 1 0.266646064772683 1 0.186580866575241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460286 synonymous SNV . 0 5 hm5C_associated_SNPs_26064 0 0 0 0 1 Cytosol 1 0.500231643914672 1 0.999536712170656 hm5C_site_26652 DeepMRMD:1;iRNA_m5C:0.999536712170656 26653 chrX 135106598 135106598 1 + A G LIHC 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTGTTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT < 41bp 1 0.314828596216016 1 0.539479494094849 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106598 synonymous SNV . 0 6 hm5C_associated_SNPs_26065 0 0 1 0 1 Endoplasmic reticulum 1 0.500231641848811 0.921041011810302 0.999536716302378 hm5C_site_26653 DeepMRMD:0.921041011810302;iRNA_m5C:0.999536716302378 26654 chr1 201837827 201837827 1 + T C LIHC 201837817 + 201837797 201837837 41 CTCAGGACATCTTCAAGGAGCTGTCCCAGATTGAAGCCTGT CTCAGGACATCTTCAAGGAGCTGTCCCAGACTGAAGCCTGT < 41bp 1 0.0403156426756033 1 0.0650431513786316 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201837817 chr1:201837827 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_26066 0 0 1 0 2 Nucleus 1 0.5002316439211 1 0.999536712157801 hm5C_site_26654 DeepMRMD:1;iRNA_m5C:0.999536712157801 26655 chr10 118314762 118314762 1 + T C LIHC 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATCTGT < 41bp 1 0.56378481344543 1 0.0869346261024475 experiment 0.872430373109141 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314762 nonsynonymous SNV 0.997 5 38 hm5C_associated_SNPs_26067 0 0 0 0 1 unknown 1 0.500231491851276 1 0.999537016297448 hm5C_site_26655 DeepMRMD:1;iRNA_m5C:0.999537016297448 26656 chr10 118314762 118314762 1 + T C LIHC 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATCTGTG < 41bp 1 0.17461044336519 1 0.113089114427567 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314762 nonsynonymous SNV 0.997 5 37 hm5C_associated_SNPs_26068 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_26656 DeepMRMD:1;iRNA_m5C:0.999536712157815 26657 chr10 118314762 118314762 1 + T C LIHC 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATCTGTGG < 41bp 1 0.363694445195374 1 0.237764358520508 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314762 nonsynonymous SNV 0.997 5 36 hm5C_associated_SNPs_26069 0 0 0 0 1 unknown 1 0.500231643921068 1 0.999536712157864 hm5C_site_26657 DeepMRMD:1;iRNA_m5C:0.999536712157864 26658 chr10 118314762 118314762 1 + T C LIHC 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCGATTGGACCCCAGCGATGCCAAATCTGTGGATGT < 41bp 1 0.283176493709295 1 0.10272091627121 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314762 nonsynonymous SNV 0.997 5 32 hm5C_associated_SNPs_26071 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_26658 DeepMRMD:1;iRNA_m5C:0.999536712157815 26659 chr10 118314762 118314762 1 + T C LIHC 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCGATTGGACCCCAGCGATGCCAAATCTGTGGATGTAATTC < 41bp 1 0.284860528540056 1 0.0249900817871094 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314762 nonsynonymous SNV 0.997 5 27 hm5C_associated_SNPs_26072 0 0 0 0 1 unknown 1 0.50023164584082 1 0.999536708318361 hm5C_site_26659 DeepMRMD:1;iRNA_m5C:0.999536708318361 26660 chr10 118314762 118314762 1 + T C LIHC 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CGATTGGACCCCAGCGATGCCAAATCTGTGGATGTAATTCA < 41bp 1 0.329982091124466 1 0.240802854299545 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314762 nonsynonymous SNV 0.997 5 26 hm5C_associated_SNPs_26073 0 0 0 0 1 unknown 1 0.500231643921218 1 0.999536712157564 hm5C_site_26660 DeepMRMD:1;iRNA_m5C:0.999536712157564 26661 chr10 118314762 118314762 1 + T C LIHC 118314776 + 118314756 118314796 41 CCAAATTTGTGGATGTAATTCACACGGATGGTGCCCCCATA CCAAATCTGTGGATGTAATTCACACGGATGGTGCCCCCATA < 41bp 1 0.660474794957931 1 0.138663679361343 experiment 0.679050410084139 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314776 chr10:118314762 nonsynonymous SNV 0.997 5 7 hm5C_associated_SNPs_26074 0 0 0 0 1 unknown 1 0.500231643918243 1 0.999536712163513 hm5C_site_26661 DeepMRMD:1;iRNA_m5C:0.999536712163513 26662 chr10 118314762 118314762 1 + T C LIHC 118314780 + 118314760 118314800 41 ATTTGTGGATGTAATTCACACGGATGGTGCCCCCATAGTCC ATCTGTGGATGTAATTCACACGGATGGTGCCCCCATAGTCC < 41bp 1 0.649088656138665 1 0.302145302295685 experiment 0.70182268772267 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314780 chr10:118314762 nonsynonymous SNV 0.997 5 3 hm5C_associated_SNPs_26075 0 0 0 0 1 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_26662 DeepMRMD:1;iRNA_m5C:0.999536712157814 26663 chr19 39664257 39664257 1 + G T LIHC 39664261 + 39664241 39664281 41 ACGGGCCATCAGCGGGGGGCCTGGCCATCCCCCAGTCCTCC ACGGGCCATCAGCGGGTGGCCTGGCCATCCCCCAGTCCTCC < 41bp 1 0.588549507674823 1 0.0352093875408173 experiment 0.822900984650355 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK4 ENSG00000130669 CDS Human protein_coding chr19:39664261 chr19:39664257 synonymous SNV . 0 17 hm5C_associated_SNPs_26076 0 0 1 0 1 Ribosome 1 0.500231643816501 1 0.999536712366998 hm5C_site_26663 DeepMRMD:1;iRNA_m5C:0.999536712366998 26664 chr3 158519925 158519925 1 + C G LIHC 158519940 + 158519920 158519960 41 CTCTCCGTCTCCTGCGGGCGCAATGGAGGAGGAGGATGAGG CTCTCGGTCTCCTGCGGGCGCAATGGAGGAGGAGGATGAGG < 41bp 1 0.499964693390045 1 0.445691615343094 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158519940 chr3:158519925 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_26077 0 0 1 0 0 Ribosome 1 0.500231643921041 1 0.999536712157918 hm5C_site_26664 DeepMRMD:1;iRNA_m5C:0.999536712157918 26665 chr17 7254302 7254302 1 + G A LIHC 7254301 + 7254281 7254321 41 AAAGATGAGGGAGGCTGAAGCGGCCCAGGGGCAGGCAGGTA AAAGATGAGGGAGGCTGAAGCAGCCCAGGGGCAGGCAGGTA < 41bp 1 0.488604052984175 1 0.575206100940704 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7254301 chr17:7254302 synonymous SNV . 0 22 hm5C_associated_SNPs_26078 0 0 0 0 2 nucleus 1 0.500231643921092 0.849587798118592 0.999536712157815 hm5C_site_26665 DeepMRMD:0.849587798118592;iRNA_m5C:0.999536712157815 26666 chr22 39125539 39125539 1 + G T LIHC 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCGACGAAAAAGTGCCCCCTGACGAAACGAGACGA < 41bp 1 0.0560374966990693 1 0.143999516963959 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125539 nonsynonymous SNV 0.910 2 19 hm5C_associated_SNPs_26079 0 0 1 0 1 Ribosome 1 0.500231627904007 1 0.999536744191985 hm5C_site_26666 DeepMRMD:1;iRNA_m5C:0.999536744191985 26667 chr22 39125539 39125539 1 + G T LIHC 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCGACGAAAAAGTGCCCCCTGACGAAACGAGACGAG < 41bp 1 0.0816328330150366 1 0.256633400917053 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125539 nonsynonymous SNV 0.910 2 18 hm5C_associated_SNPs_26080 0 0 1 0 1 Ribosome 1 0.500231667162543 1 0.999536665674915 hm5C_site_26667 DeepMRMD:1;iRNA_m5C:0.999536665674915 26668 chr22 39125539 39125539 1 + G T LIHC 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCGACGAAAAAGTGCCCCCTGACGAAACGAGACGAGG < 41bp 1 0.0382660264635795 1 0.213740795850754 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125539 nonsynonymous SNV 0.910 2 17 hm5C_associated_SNPs_26081 0 0 1 0 1 Ribosome 1 0.500231643921077 1 0.999536712157847 hm5C_site_26668 DeepMRMD:1;iRNA_m5C:0.999536712157847 26669 chr22 39125539 39125539 1 + G T LIHC 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCGACGAAAAAGTGCCCCCTGACGAAACGAGACGAGGG < 41bp 1 0.0839073347914798 1 0.218907356262207 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125539 nonsynonymous SNV 0.910 2 16 hm5C_associated_SNPs_26082 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_26669 DeepMRMD:1;iRNA_m5C:0.999536712157814 26670 chr22 39125539 39125539 1 + G T LIHC 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCGACGAAAAAGTGCCCCCTGACGAAACGAGACGAGGGG < 41bp 1 0.162936218061795 1 0.370034247636795 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125539 nonsynonymous SNV 0.910 2 15 hm5C_associated_SNPs_26083 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_26670 DeepMRMD:1;iRNA_m5C:0.999536712157815 26671 chr17 28754464 28754464 1 + A G LIHC 28754477 + 28754457 28754497 41 TGAACCGAAATTTCCCAGACCAGTTTGTTCAGATCACAGAT TGAACCGGAATTTCCCAGACCAGTTTGTTCAGATCACAGAT < 41bp 1 0.121184066141527 1 0.0616860091686249 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28754477 chr17:28754464 synonymous SNV . 0 8 hm5C_associated_SNPs_26084 0 0 0 0 1 Nucleus 1 0.500231643948384 1 0.999536712103231 hm5C_site_26671 DeepMRMD:1;iRNA_m5C:0.999536712103231 26672 chr4 2965787 2965787 1 + G T LIHC 2965776 + 2965756 2965796 41 CCTCGGTCTCGCAGAATCCGCCGGCGGCGGCGGCGCCAGGA CCTCGGTCTCGCAGAATCCGCCGGCGGCGGCTGCGCCAGGA < 41bp 1 0.698613789756884 1 0.756547689437866 experiment 0.602772420486232 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRK4 ENSG00000125388 CDS Human protein_coding chr4:2965776 chr4:2965787 synonymous SNV . 0 32 hm5C_associated_SNPs_26085 0 0 0 0 1 Cytosol 1 0.500231643954716 0.486904621124268 0.999536712090568 hm5C_site_26672 DeepMRMD:0.486904621124268;iRNA_m5C:0.999536712090568 26673 chr12 57910031 57910031 1 + A C LIHC 57910022 + 57910002 57910042 41 CTGGTGATAACTTTGTTGTTCTCCAGGCAAAAACGTCCCCG CTGGTGATAACTTTGTTGTTCTCCAGGCACAAACGTCCCCG < 41bp 1 0.450144915141568 1 0.819933533668518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57910022 chr12:57910031 nonsynonymous SNV 0.006 1 30 hm5C_associated_SNPs_26086 0 0 1 1 2 Cytosol 1 0.500231643921096 0.360132932662964 0.999536712157809 hm5C_site_26673 DeepMRMD:0.360132932662964;iRNA_m5C:0.999536712157809 26674 chr17 79663472 79663472 1 + G T LIHC 79663489 + 79663469 79663509 41 GGAGAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC GGATAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC < 41bp 1 0.65933827780395 1 0.759946823120117 experiment 0.681323444392101 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663489 chr17:79663472 nonsynonymous SNV 0.994 0 4 hm5C_associated_SNPs_26087 0 0 1 0 1 Nucleus 1 0.500231643921092 0.480106353759766 0.999536712157815 hm5C_site_26674 DeepMRMD:0.480106353759766;iRNA_m5C:0.999536712157815 26675 chr7 69583171 69583171 1 + A T LIHC 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGTGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA < 41bp 1 0.110460550570387 1 0.262025356292725 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583171 synonymous SNV . 0 6 hm5C_associated_SNPs_26088 0 0 0 0 2 Nucleus 1 0.500231643911411 1 0.999536712177179 hm5C_site_26675 DeepMRMD:1;iRNA_m5C:0.999536712177179 26676 chr16 29848051 29848051 1 + G C LIHC 29848064 + 29848044 29848084 41 CAGCCCTGCACCTCCGGGCTCGGCGGAACTTCCGGGACTTC CAGCCCTCCACCTCCGGGCTCGGCGGAACTTCCGGGACTTC < 41bp 1 0.635696644833211 1 0.594521522521973 experiment 0.728606710333579 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29848064 chr16:29848051 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_26089 0 0 1 0 1 Nucleus 1 0.500231644730262 0.810956954956054 0.999536710539476 hm5C_site_26676 DeepMRMD:0.810956954956054;iRNA_m5C:0.999536710539476 26677 chr6 28333341 28333341 1 + G A LIHC 28333342 + 28333322 28333362 41 GAAGCTGGTGAACAGGAGGGCAGGCTACAAAGAAAGCAGAA GAAGCTGGTGAACAGGAGGACAGGCTACAAAGAAAGCAGAA < 41bp 1 0.541914441394287 1 0.494701981544495 experiment 0.916171117211427 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28333342 chr6:28333341 nonsynonymous SNV 0.969 0 20 hm5C_associated_SNPs_26090 0 0 1 0 0 exosome 1 0.500231643864976 1 0.999536712270047 hm5C_site_26677 DeepMRMD:1;iRNA_m5C:0.999536712270047 26678 chr16 88781068 88781068 1 + G C LIHC 88781052 + 88781032 88781072 41 TCTCTCCCAGATGCAGTCACCCATCCCCCTGACTGAGACCC TCTCTCCCAGATGCAGTCACCCATCCCCCTGACTGACACCC < 41bp 1 0.0502080218790004 1 0.163143306970596 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781052 chr16:88781068 nonsynonymous SNV 0.010 0 37 hm5C_associated_SNPs_26091 0 0 1 0 2 Cytosol 1 0.500232033120403 1 0.999535933759194 hm5C_site_26678 DeepMRMD:1;iRNA_m5C:0.999535933759194 26679 chr1 10221232 10221232 1 + T C LIHC 10221247 + 10221227 10221267 41 AAACATGTTGATAAACGACACGACGTTTTTGCTCGATGAAA AAACACGTTGATAAACGACACGACGTTTTTGCTCGATGAAA < 41bp 1 0.31049730952127 1 0.0688953101634979 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10221247 chr1:10221232 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_26092 0 0 0 0 1 Cytosol 1 0.500231640923725 1 0.99953671815255 hm5C_site_26679 DeepMRMD:1;iRNA_m5C:0.99953671815255 26680 chr1 171759656 171759656 1 + A T LIHC 171759671 + 171759651 171759691 41 CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTGTG CCTGCTGCCCCGGGGCAGTCCATTGATAAGAGTTACCTGTG < 41bp 1 0.303781696328138 1 0.0399663746356964 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759671 chr1:171759656 synonymous SNV . 0 6 hm5C_associated_SNPs_26093 0 0 0 0 1 Ribosome 1 0.50023164392287 1 0.99953671215426 hm5C_site_26680 DeepMRMD:1;iRNA_m5C:0.99953671215426 26681 chr1 198233311 198233311 1 + A G LIHC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTGAAGATAATGAGCTAAA < 41bp 1 0.127214616039028 1 0.380498349666595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233311 synonymous SNV . 0 36 hm5C_associated_SNPs_26094 0 0 1 0 2 Nucleus 1 0.500231644489865 1 0.99953671102027 hm5C_site_26681 DeepMRMD:1;iRNA_m5C:0.99953671102027 26682 chr3 43389366 43389366 1 + A G LIHC 43389379 + 43389359 43389399 41 CAGCTGCAGTAGTTCGGAGACCAGTGATGATGATTCTGAAA CAGCTGCGGTAGTTCGGAGACCAGTGATGATGATTCTGAAA < 41bp 1 0.364408869519359 1 0.200572401285172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRK ENSG00000163788 CDS Human protein_coding chr3:43389379 chr3:43389366 nonsynonymous SNV 0.994 4 8 hm5C_associated_SNPs_26095 0 0 1 0 0 Cytosol 1 0.500232783859194 1 0.999534432281613 hm5C_site_26682 DeepMRMD:1;iRNA_m5C:0.999534432281613 26683 chr5 7878172 7878172 1 + G T LIHC 7878185 + 7878165 7878205 41 ATCACCTGCATCCTCGAGGACAGACCTTGTGAAGTCAGAGC ATCACCTTCATCCTCGAGGACAGACCTTGTGAAGTCAGAGC < 41bp 1 0.277367757283214 1 0.199733436107635 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7878185 chr5:7878172 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_26096 0 0 1 1 0 Nucleus 1 0.500231643921084 1 0.999536712157831 hm5C_site_26683 DeepMRMD:1;iRNA_m5C:0.999536712157831 26684 chr5 7878172 7878172 1 + G T LIHC 7878190 + 7878170 7878210 41 CTGCATCCTCGAGGACAGACCTTGTGAAGTCAGAGCTGCTA CTTCATCCTCGAGGACAGACCTTGTGAAGTCAGAGCTGCTA < 41bp 1 0.57575349002156 1 0.0476958155632019 experiment 0.84849301995688 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7878190 chr5:7878172 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_26097 0 0 1 1 0 Nucleus 1 0.500231643921115 1 0.999536712157771 hm5C_site_26684 DeepMRMD:1;iRNA_m5C:0.999536712157771 26685 chr7 4794986 4794986 1 + A G LIHC 4795002 + 4794982 4795022 41 CCCTACTACCGGACGGCCGACAAAGGCTGGCAGGTGAAGCC CCCTGCTACCGGACGGCCGACAAAGGCTGGCAGGTGAAGCC < 41bp 1 0.243725950431459 1 0.601761817932129 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4795002 chr7:4794986 nonsynonymous SNV 0.978 5 5 hm5C_associated_SNPs_26098 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.796476364135742 0.999536712157815 hm5C_site_26685 DeepMRMD:0.796476364135742;iRNA_m5C:0.999536712157815 26686 chr10 70666604 70666604 1 + A G LIHC 70666624 + 70666604 70666644 41 AGAAGGATTTAATAGACTTTCAGATGAATTCTCCAAATCTC GGAAGGATTTAATAGACTTTCAGATGAATTCTCCAAATCTC < 41bp 1 0.54873396796799 1 0.6008141040802 experiment 0.90253206406402 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX50 ENSG00000107625 CDS Human protein_coding chr10:70666624 chr10:70666604 synonymous SNV . 0 1 hm5C_associated_SNPs_26101 0 0 0 0 0 chromatin 1 0.500231643921093 0.7983717918396 0.999536712157815 hm5C_site_26686 DeepMRMD:0.7983717918396;iRNA_m5C:0.999536712157815 26687 chr11 61404704 61404704 1 + T A LIHC 61404702 + 61404682 61404722 41 GCTCAACATCTCCCCCTTCTCCTCTGGGCTGGTCATCCAGC GCTCAACATCTCCCCCTTCTCCACTGGGCTGGTCATCCAGC < 41bp 1 0.343002838103539 1 0.295108258724213 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404702 chr11:61404704 . . 0 23 hm5C_associated_SNPs_26102 0 0 1 0 0 unknown 1 0.500231644070569 1 0.999536711858863 hm5C_site_26687 DeepMRMD:1;iRNA_m5C:0.999536711858863 26688 chr17 16332223 16332223 1 + T A LIHC 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCAGGGCTGGC < 41bp 1 0.631518418331694 1 0.443942993879318 experiment 0.736963163336612 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332223 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_26104 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644040746 1 0.999536711918507 hm5C_site_26688 DeepMRMD:1;iRNA_m5C:0.999536711918507 26689 chr19 757065 757065 1 + C T LIHC 757057 + 757037 757077 41 TACCATCTGGTGTGCATGGGCCCCGAGGCCAGCGGCTGGGG TACCATCTGGTGTGCATGGGCCCCGAGGTCAGCGGCTGGGG < 41bp 1 0.336540079606512 1 0.0637609660625458 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757057 chr19:757065 nonsynonymous SNV 0.035 1 29 hm5C_associated_SNPs_26105 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26689 DeepMRMD:1;iRNA_m5C:0.999536712157815 26690 chr19 757065 757065 1 + C T LIHC 757058 + 757038 757078 41 ACCATCTGGTGTGCATGGGCCCCGAGGCCAGCGGCTGGGGC ACCATCTGGTGTGCATGGGCCCCGAGGTCAGCGGCTGGGGC < 41bp 1 0.572170467453396 1 0.258354812860489 experiment 0.855659065093209 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757058 chr19:757065 nonsynonymous SNV 0.035 1 28 hm5C_associated_SNPs_26106 0 0 1 0 0 nucleus 1 0.50023162670877 1 0.999536746582459 hm5C_site_26690 DeepMRMD:1;iRNA_m5C:0.999536746582459 26691 chr19 757065 757065 1 + C T LIHC 757059 + 757039 757079 41 CCATCTGGTGTGCATGGGCCCCGAGGCCAGCGGCTGGGGCC CCATCTGGTGTGCATGGGCCCCGAGGTCAGCGGCTGGGGCC < 41bp 1 0.498960536863632 1 0.294692754745483 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757059 chr19:757065 nonsynonymous SNV 0.035 1 27 hm5C_associated_SNPs_26107 0 0 1 0 0 nucleus 1 0.500231643956668 1 0.999536712086664 hm5C_site_26691 DeepMRMD:1;iRNA_m5C:0.999536712086664 26692 chr19 33167237 33167237 1 + T A LIHC 33167256 + 33167236 33167276 41 CTGGTGCTGACCGTCGGTGGCTCGGCGGACTCGCAGAACCT CAGGTGCTGACCGTCGGTGGCTCGGCGGACTCGCAGAACCT < 41bp 1 0.659306174302738 1 0.494039058685303 experiment 0.681387651394524 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RGS9BP ENSG00000186326 CDS Human protein_coding chr19:33167256 chr19:33167237 nonsynonymous SNV 0.933 1 2 hm5C_associated_SNPs_26109 0 0 1 0 0 exosome 1 0.500231657402529 1 0.999536685194943 hm5C_site_26692 DeepMRMD:1;iRNA_m5C:0.999536685194943 26693 chr22 32881139 32881139 1 + G C LIHC 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGCCAGGGCAGCTCCGCTACTCTCACCTGTGTGC < 41bp 1 0.437596506743188 1 0.113410949707031 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881139 nonsynonymous SNV 0.969 2 11 hm5C_associated_SNPs_26110 0 0 1 0 2 chromatin 1 0.500231641613757 1 0.999536716772486 hm5C_site_26693 DeepMRMD:1;iRNA_m5C:0.999536716772486 26694 chr16 67006828 67006828 1 + C A LIHC 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCAA < 41bp 1 0.289148187388051 1 0.315994024276733 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006828 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_26111 0 0 1 0 1 nucleolus 1 0.500231643921092 1 0.999536712157816 hm5C_site_26694 DeepMRMD:1;iRNA_m5C:0.999536712157816 26695 chr17 38610236 38610236 1 + A G LUAD 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCCGCTTCGCAGAGCCGCACCCACGAGGACCTCTACATCAT < 41bp 1 0.384813048704127 1 0.0996502935886383 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610236 synonymous SNV . 0 9 hm5C_associated_SNPs_26112 0 0 1 0 2 Nucleus 1 0.500231643921083 1 0.999536712157834 hm5C_site_26695 DeepMRMD:1;iRNA_m5C:0.999536712157834 26696 chr18 21474905 21474905 1 + C G LUAD 21474924 + 21474904 21474944 41 ACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT AGCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT < 41bp 1 0.158461822873548 1 0.193757891654968 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21474924 chr18:21474905 nonsynonymous SNV 0.084 3 2 hm5C_associated_SNPs_26113 0 0 1 0 1 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_26696 DeepMRMD:1;iRNA_m5C:0.999536712157808 26697 chr10 81841615 81841615 1 + C G LUAD 81841623 + 81841603 81841643 41 GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCC GTCTTCTGGCCTGAGAGTATCCCTTATCAGAACCTTGGGCC < 41bp 1 0.363840887774735 1 0.0401555597782135 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM254 ENSG00000133678 CDS Human protein_coding chr10:81841623 chr10:81841615 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_26114 0 0 0 0 2 Endoplasmic reticulum 1 0.500254107136155 1 0.999491785727691 hm5C_site_26697 DeepMRMD:1;iRNA_m5C:0.999491785727691 26698 chr16 705355 705355 1 + C T LUAD 705347 + 705327 705367 41 GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT GCAGTGTGCGGCTCTGGCGGCTGCGTGGTGGGGTGCTGCGT < 41bp 1 0.480130335835965 1 0.402893155813217 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:705347 chr16:705355 synonymous SNV . 0 29 hm5C_associated_SNPs_26115 0 0 1 0 1 Cytosol 1 0.500231623141146 1 0.999536753717708 hm5C_site_26698 DeepMRMD:1;iRNA_m5C:0.999536753717708 26699 chr19 56925402 56925402 1 + G T LUAD 56925395 + 56925375 56925415 41 ATGGGAATGGCTGAACCCTGCTCAGAGGAATTTGTACAGGA ATGGGAATGGCTGAACCCTGCTCAGAGTAATTTGTACAGGA < 41bp 1 0.638170771883002 1 0.108687996864319 experiment 0.723658456233996 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925395 chr19:56925402 nonsynonymous SNV 0.215 2 28 hm5C_associated_SNPs_26116 0 0 0 0 2 chromatin 1 0.500231643921473 1 0.999536712157054 hm5C_site_26699 DeepMRMD:1;iRNA_m5C:0.999536712157054 26700 chr12 66724946 66724946 1 + C G LUAD 66724950 + 66724930 66724970 41 CCAGGGGTCCGAGGAGCAAACAGTTGTCTATGTGGTGGGGA CCAGGGGTCCGAGGAGGAAACAGTTGTCTATGTGGTGGGGA < 41bp 1 0.597469064728118 1 0.420426875352859 experiment 0.805061870543764 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HELB ENSG00000127311 CDS Human protein_coding chr12:66724950 chr12:66724946 nonsynonymous SNV 0.031 0 17 hm5C_associated_SNPs_26117 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26700 DeepMRMD:1;iRNA_m5C:0.999536712157815 26701 chr17 34001246 34001246 1 + A T LUAD 34001266 + 34001246 34001286 41 ACTCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC TCTCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC < 41bp 1 0.539497070420532 1 0.664765954017639 experiment 0.921005859158936 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:34001266 chr17:34001246 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_26118 0 0 1 0 2 Cytosol 1 0.500231643921093 0.670468091964722 0.999536712157814 hm5C_site_26701 DeepMRMD:0.670468091964722;iRNA_m5C:0.999536712157814 26702 chr11 118952213 118952213 1 + T C LUAD 118952207 + 118952187 118952227 41 AGCTTTTCTGTGATTGCTGACTACTTTGGCAGAGGTGTTTT AGCTTTTCTGTGATTGCTGACTACTTCGGCAGAGGTGTTTT < 41bp 1 0.213291185945047 1 0.272597163915634 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS11 ENSG00000160695 CDS Human protein_coding chr11:118952207 chr11:118952213 synonymous SNV . 0 27 hm5C_associated_SNPs_26119 0 0 0 0 1 cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_26702 DeepMRMD:1;iRNA_m5C:0.999536712157808 26703 chr7 142459706 142459706 1 + C G LUAD 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATGCG < 41bp 1 0.621841576350248 1 0.368408024311066 experiment 0.756316847299504 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459706 nonsynonymous SNV 0.013 5 39 hm5C_associated_SNPs_26120 0 0 0 0 1 Cytosol 1 0.500231643515907 1 0.999536712968186 hm5C_site_26703 DeepMRMD:1;iRNA_m5C:0.999536712968186 26704 chr7 142459706 142459706 1 + C G LUAD 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCAGCCAAGATCATGCGCCACC < 41bp 1 0.533149560939577 1 0.0391286313533783 experiment 0.933700878120845 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459706 nonsynonymous SNV 0.013 5 34 hm5C_associated_SNPs_26121 0 0 0 0 1 Cytosol 1 0.500231783179679 1 0.999536433640643 hm5C_site_26704 DeepMRMD:1;iRNA_m5C:0.999536433640643 26705 chr7 142459706 142459706 1 + C G LUAD 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAGATCATGCGCCACCCCC < 41bp 1 0.356409968998281 1 0.489110499620438 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459706 nonsynonymous SNV 0.013 5 31 hm5C_associated_SNPs_26122 0 0 0 0 1 Cytosol 1 0.500231643884697 1 0.999536712230607 hm5C_site_26705 DeepMRMD:1;iRNA_m5C:0.999536712230607 26706 chr7 142459706 142459706 1 + C G LUAD 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATGCGCCACCCCCAATACGA < 41bp 1 0.471761936334904 1 0.172622799873352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459706 nonsynonymous SNV 0.013 5 24 hm5C_associated_SNPs_26123 0 0 0 0 1 Cytosol 1 0.500231644034068 1 0.999536711931865 hm5C_site_26706 DeepMRMD:1;iRNA_m5C:0.999536711931865 26707 chr7 142459706 142459706 1 + C G LUAD 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATGCGCCACCCCCAATACGACAGGAA < 41bp 1 0.107537825955655 1 0.0504283010959625 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459706 nonsynonymous SNV 0.013 5 18 hm5C_associated_SNPs_26125 0 0 0 0 1 Cytosol 1 0.50022623065672 1 0.999547538686559 hm5C_site_26707 DeepMRMD:1;iRNA_m5C:0.999547538686559 26708 chr7 142459706 142459706 1 + C G LUAD 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATGCGCCACCCCCAATACGACAGGAAG < 41bp 1 0.180502074638331 1 0.0761723220348358 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459706 nonsynonymous SNV 0.013 5 17 hm5C_associated_SNPs_26126 0 0 0 0 1 Cytosol 1 0.500231642766155 1 0.999536714467689 hm5C_site_26708 DeepMRMD:1;iRNA_m5C:0.999536714467689 26709 chr7 142459706 142459706 1 + C G LUAD 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATGCGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.158323921621265 1 0.0463628172874451 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459706 nonsynonymous SNV 0.013 5 15 hm5C_associated_SNPs_26127 0 0 0 0 1 Cytosol 1 0.500231643914855 1 0.99953671217029 hm5C_site_26709 DeepMRMD:1;iRNA_m5C:0.99953671217029 26710 chr7 142459706 142459706 1 + C G LUAD 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATCATGCGCCACCCCCAATACGACAGGAAGACT < 41bp 1 0.527031813365675 1 0.459508329629898 experiment 0.94593637326865 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459706 nonsynonymous SNV 0.013 5 14 hm5C_associated_SNPs_26128 0 0 0 0 1 Cytosol 1 0.500231643922975 1 0.99953671215405 hm5C_site_26710 DeepMRMD:1;iRNA_m5C:0.99953671215405 26711 chr7 142459706 142459706 1 + C G LUAD 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATGCGCCACCCCCAATACGACAGGAAGACTC < 41bp 1 0.534109871705933 1 0.17757460474968 experiment 0.931780256588134 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459706 nonsynonymous SNV 0.013 5 13 hm5C_associated_SNPs_26129 0 0 0 0 1 Cytosol 1 0.500231643761545 1 0.999536712476909 hm5C_site_26711 DeepMRMD:1;iRNA_m5C:0.999536712476909 26712 chr7 142459706 142459706 1 + C G LUAD 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATGCGCCACCCCCAATACGACAGGAAGACTCT < 41bp 1 0.250358612158127 1 0.159634530544281 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459706 nonsynonymous SNV 0.013 5 12 hm5C_associated_SNPs_26130 0 0 0 0 1 Cytosol 1 0.500231644342489 1 0.999536711315022 hm5C_site_26712 DeepMRMD:1;iRNA_m5C:0.999536711315022 26713 chr7 142459706 142459706 1 + C G LUAD 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATGCGCCACCCCCAATACGACAGGAAGACTCTG < 41bp 1 0.475091726836707 1 0.116670101881027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459706 nonsynonymous SNV 0.013 5 11 hm5C_associated_SNPs_26131 0 0 0 0 1 Cytosol 1 0.500231591747112 1 0.999536816505777 hm5C_site_26713 DeepMRMD:1;iRNA_m5C:0.999536816505777 26714 chr17 43183001 43183001 1 + A G LUAD 43183002 + 43182982 43183022 41 CCTAGGTTGGACTGGTGCTACAATAACCAGTCACCAGTGCG CCTAGGTTGGACTGGTGCTGCAATAACCAGTCACCAGTGCG < 41bp 1 0.33365763482752 1 0.113702744245529 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NMT1 ENSG00000136448 CDS Human protein_coding chr17:43183002 chr17:43183001 synonymous SNV . 0 20 hm5C_associated_SNPs_26132 0 0 1 0 1 Ribosome 1 0.500231643921067 1 0.999536712157867 hm5C_site_26714 DeepMRMD:1;iRNA_m5C:0.999536712157867 26715 chr7 129096289 129096289 1 + G T LUAD 129096284 + 129096264 129096304 41 CCTGTTTCTTCCTTAGTTTACCCTCGGTGGATTTGAGCATC CCTGTTTCTTCCTTAGTTTACCCTCTGTGGATTTGAGCATC < 41bp 1 0.0966089638583822 1 0.0317192077636719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129096284 chr7:129096289 nonsynonymous SNV 0.980 5 26 hm5C_associated_SNPs_26133 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26715 DeepMRMD:1;iRNA_m5C:0.999536712157815 26716 chr20 57466789 57466789 1 + G A LUAD 57466771 + 57466751 57466791 41 CCGGCCGCGCCCCGCCGCCGCCGCCGCCGCCATGGGCTGCC CCGGCCGCGCCCCGCCGCCGCCGCCGCCGCCATGGGCTACC < 41bp 1 0.302513107439725 1 0.192152351140976 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57466771 chr20:57466789 nonsynonymous SNV 0.647 4 39 hm5C_associated_SNPs_26135 0 0 1 0 0 Cytosol 1 0.500231643793492 1 0.999536712413015 hm5C_site_26716 DeepMRMD:1;iRNA_m5C:0.999536712413015 26717 chr6 15487586 15487586 1 + A T LUAD 15487577 + 15487557 15487597 41 GTCAACACGGGAGAAGGAACCTGTTCAAAAACACAAAAGCA GTCAACACGGGAGAAGGAACCTGTTCAAATACACAAAAGCA < 41bp 1 0.100268265550253 1 0.400203943252563 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15487577 chr6:15487586 nonsynonymous SNV 0.998 3 30 hm5C_associated_SNPs_26136 0 0 1 0 1 Cytosol 1 0.500231678476981 1 0.999536643046038 hm5C_site_26717 DeepMRMD:1;iRNA_m5C:0.999536643046038 26718 chr7 99701314 99701314 1 + A T LUAD 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCGCCCCGTCCTGTCCAGTCGCTCTGACCTGGTGAGGGAA < 41bp 1 0.402363036268969 1 0.298231661319733 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701314 nonsynonymous SNV 0.982 3 31 hm5C_associated_SNPs_26137 0 0 0 0 2 Cytosol 1 0.500231642757304 1 0.999536714485393 hm5C_site_26718 DeepMRMD:1;iRNA_m5C:0.999536714485393 26719 chr12 105538144 105538144 1 + G A LUAD 105538149 + 105538129 105538169 41 TAAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAA TAAAGCTGGATGACCAAAACCCTTTCAAAGTTGGCATGAAA < 41bp 1 0.033884787505053 1 0.0599221587181091 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538149 chr12:105538144 nonsynonymous SNV 0.997 3 16 hm5C_associated_SNPs_26138 0 0 1 0 2 unknown 1 0.500245882668898 1 0.999508234662203 hm5C_site_26719 DeepMRMD:1;iRNA_m5C:0.999508234662203 26720 chr12 105538144 105538144 1 + G A LUAD 105538150 + 105538130 105538170 41 AAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAAG AAAGCTGGATGACCAAAACCCTTTCAAAGTTGGCATGAAAG < 41bp 1 0.048636970114879 1 0.0923659205436707 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538150 chr12:105538144 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_26139 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_26720 DeepMRMD:1;iRNA_m5C:0.999536712157815 26721 chr4 6642869 6642869 1 + G A LUAD 6642867 + 6642847 6642887 41 CGACGCGGCCGAGGGCCGGGCGGCCAAGAGGTGCGAGAAGG CGACGCGGCCGAGGGCCGGGCGACCAAGAGGTGCGAGAAGG < 41bp 1 0.455389984763519 1 0.36418879032135 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRFAP1 ENSG00000179010 CDS Human protein_coding chr4:6642867 chr4:6642869 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_26141 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26721 DeepMRMD:1;iRNA_m5C:0.999536712157815 26722 chr4 6642869 6642869 1 + G A LUAD 6642870 + 6642850 6642890 41 CGCGGCCGAGGGCCGGGCGGCCAAGAGGTGCGAGAAGGCCG CGCGGCCGAGGGCCGGGCGACCAAGAGGTGCGAGAAGGCCG < 41bp 1 0.352763866299432 1 0.594481825828552 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRFAP1 ENSG00000179010 CDS Human protein_coding chr4:6642870 chr4:6642869 nonsynonymous SNV 0.001 0 20 hm5C_associated_SNPs_26142 0 0 1 0 0 Ribosome 1 0.500231643895104 0.811036348342896 0.999536712209792 hm5C_site_26722 DeepMRMD:0.811036348342896;iRNA_m5C:0.999536712209792 26723 chr14 105814896 105814896 1 + G T LUAD 105814915 + 105814895 105814935 41 TGGTGATCGCTGTCAAGATGCAGGTGAGGCCGCTTGTGACC TTGTGATCGCTGTCAAGATGCAGGTGAGGCCGCTTGTGACC < 41bp 1 0.61201917753919 1 0.752837300300598 experiment 0.775961644921621 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS2 ENSG00000179364 CDS Human protein_coding chr14:105814915 chr14:105814896 synonymous SNV . 0 2 hm5C_associated_SNPs_26144 0 0 1 0 2 Cytosol 1 0.50023175237695 0.494325399398804 0.999536495246099 hm5C_site_26723 DeepMRMD:0.494325399398804;iRNA_m5C:0.999536495246099 26724 chr11 118516533 118516533 1 + T A LUAD 118516515 + 118516495 118516535 41 GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTCATGG GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTCAAGG < 41bp 1 0.599750416796097 1 0.798154592514038 experiment 0.800499166407807 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118516515 chr11:118516533 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_26145 0 0 1 0 1 Cytosol 1 0.500231643874377 0.403690814971924 0.999536712251246 hm5C_site_26724 DeepMRMD:0.403690814971924;iRNA_m5C:0.999536712251246 26725 chr14 100367277 100367277 1 + A T LUAD 100367289 + 100367269 100367309 41 TTGCCCCCACATGTGCGCATCTGGGATTCTGTGACATTGAA TTGCCCCCTCATGTGCGCATCTGGGATTCTGTGACATTGAA < 41bp 1 0.520531557571022 1 0.234803408384323 experiment 0.958936884857956 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367289 chr14:100367277 synonymous SNV . 0 9 hm5C_associated_SNPs_26146 0 0 0 0 2 Nucleus 1 0.500231644105694 1 0.999536711788613 hm5C_site_26725 DeepMRMD:1;iRNA_m5C:0.999536711788613 26726 chr8 124787528 124787528 1 + G C LUAD 124787510 + 124787490 124787530 41 GAAAGGCTTGAGGATAACACCATTTTCATATTATACTGGGA GAAAGGCTTGAGGATAACACCATTTTCATATTATACTGCGA < 41bp 1 0.118186730883447 1 0.253320515155792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787510 chr8:124787528 nonsynonymous SNV 0.991 0 39 hm5C_associated_SNPs_26147 0 0 1 0 1 Ribosome 1 0.500278087907971 1 0.999443824184058 hm5C_site_26726 DeepMRMD:1;iRNA_m5C:0.999443824184058 26727 chr1 116940601 116940601 1 + G T LUAD 116940615 + 116940595 116940635 41 GAGATAGTGTTTGCCAGGACCTCCCCTCAGCAGAAGCTCAT GAGATATTGTTTGCCAGGACCTCCCCTCAGCAGAAGCTCAT < 41bp 1 0.211607873629241 1 0.234282404184341 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116940615 chr1:116940601 nonsynonymous SNV 0.986 3 7 hm5C_associated_SNPs_26148 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26727 DeepMRMD:1;iRNA_m5C:0.999536712157815 26728 chr4 126337718 126337718 1 + A G LUAD 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGTAACACGGAGTCTGGATCGGGAAACAAAAGAGCGCTTT < 41bp 1 0.680571143297029 1 0.941075563430786 experiment 0.638857713405941 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337718 nonsynonymous SNV 0.870 0 10 hm5C_associated_SNPs_26149 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644110233 0.117848873138428 0.999536711779534 hm5C_site_26728 DeepMRMD:0.117848873138428;iRNA_m5C:0.999536711779534 26729 chr9 78772069 78772069 1 + G A LUAD 78772063 + 78772043 78772083 41 GCACGTGTGTGTGGAGAGCACAGACCGACAAATCAAGTAAT GCACGTGTGTGTGGAGAGCACAGACCAACAAATCAAGTAAT < 41bp 1 0.236519163167084 1 0.315087139606476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78772063 chr9:78772069 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_26151 0 0 0 1 1 exosome 1 0.500236920820585 1 0.999526158358831 hm5C_site_26729 DeepMRMD:1;iRNA_m5C:0.999526158358831 26730 chr5 154169891 154169891 1 + C T LUAD 154169887 + 154169867 154169907 41 CCCTTCTTGTTCCCACAGAACACTCTGCTCCAGCCAAGGTG CCCTTCTTGTTCCCACAGAACACTTTGCTCCAGCCAAGGTG < 41bp 1 0.207837315222107 1 0.0433136224746704 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154169887 chr5:154169891 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_26152 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_26730 DeepMRMD:1;iRNA_m5C:0.999536712157815 26731 chr1 10435365 10435365 1 + C T LUAD 10435355 + 10435335 10435375 41 GCACAAAGCACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC GCACAAAGCACCGTGGGGTCCTTTTGCAGGTCCTCAATGAC < 41bp 1 0.0389236587004145 1 0.03722083568573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10435355 chr1:10435365 nonsynonymous SNV 0.993 4 31 hm5C_associated_SNPs_26153 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26731 DeepMRMD:1;iRNA_m5C:0.999536712157815 26732 chr8 107752683 107752683 1 + A G LUAD 107752684 + 107752664 107752704 41 CGAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT CGAACAATGACAGGTTTAGGCACCCCAGTGCTGATGGTGAT < 41bp 1 0.327816450122196 1 0.103542178869247 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752684 chr8:107752683 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_26154 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_26732 DeepMRMD:1;iRNA_m5C:0.999536712157815 26733 chr19 59060599 59060599 1 + A G LUAD 59060584 + 59060564 59060604 41 GAACCCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGTC GAACCCCTGGTGCCCCACCCCTGGCTGGCATGGCCGTTGTC < 41bp 1 0.51751653025059 1 0.600765287876129 experiment 0.96496693949882 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060584 chr19:59060599 nonsynonymous SNV 0.993 0 36 hm5C_associated_SNPs_26155 0 0 1 0 1 Cytosol 1 0.500231643920891 0.798469424247742 0.999536712158218 hm5C_site_26733 DeepMRMD:0.798469424247742;iRNA_m5C:0.999536712158218 26734 chr19 59060599 59060599 1 + A G LUAD 59060588 + 59060568 59060608 41 CCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGTCAAGG CCCTGGTGCCCCACCCCTGGCTGGCATGGCCGTTGTCAAGG < 41bp 1 0.465551658281973 1 0.0390163958072662 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060588 chr19:59060599 nonsynonymous SNV 0.993 0 32 hm5C_associated_SNPs_26156 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_26734 DeepMRMD:1;iRNA_m5C:0.999536712157815 26735 chr19 59060599 59060599 1 + A G LUAD 59060592 + 59060572 59060612 41 GGTGCCCCACCCCTGGCTGGCATGGCCATTGTCAAGGTAAG GGTGCCCCACCCCTGGCTGGCATGGCCGTTGTCAAGGTAAG < 41bp 1 0.200655337102746 1 0.127493411302567 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060592 chr19:59060599 nonsynonymous SNV 0.993 0 28 hm5C_associated_SNPs_26157 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26735 DeepMRMD:1;iRNA_m5C:0.999536712157815 26736 chr19 11145722 11145722 1 + G A LUAD 11145704 + 11145684 11145724 41 AGGACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG AGGACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGAAG < 41bp 1 0.452536668681979 1 0.489314198493958 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145704 chr19:11145722 nonsynonymous SNV 0.998 3 39 hm5C_associated_SNPs_26158 0 0 1 0 0 Nucleus 1 0.500231643921792 1 0.999536712156416 hm5C_site_26736 DeepMRMD:1;iRNA_m5C:0.999536712156416 26737 chr19 11145722 11145722 1 + G A LUAD 11145707 + 11145687 11145727 41 ACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG ACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGAAGGAG < 41bp 1 0.215555597428935 1 0.418474853038788 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145707 chr19:11145722 nonsynonymous SNV 0.998 3 36 hm5C_associated_SNPs_26159 0 0 1 0 0 Nucleus 1 0.500231644685383 1 0.999536710629233 hm5C_site_26737 DeepMRMD:1;iRNA_m5C:0.999536710629233 26738 chr19 46198725 46198725 1 + G T LUAD 46198713 + 46198693 46198733 41 AGTTCCTGGAGGCCACGCTGCGGTCCCTGACAGCAGGTTGG AGTTCCTGGAGGCCACGCTGCGGTCCCTGACATCAGGTTGG < 41bp 1 0.167357757991553 1 0.54576849937439 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46198713 chr19:46198725 nonsynonymous SNV 0.628 1 33 hm5C_associated_SNPs_26160 0 0 1 0 1 chromatin 1 0.500231643926486 0.90846300125122 0.999536712147028 hm5C_site_26738 DeepMRMD:0.90846300125122;iRNA_m5C:0.999536712147028 26739 chr6 160477509 160477509 1 + G A LUAD 160477524 + 160477504 160477544 41 CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC CTGTGAAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC < 41bp 1 0.0359169722868652 1 0.0890639126300812 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160477524 chr6:160477509 stopgain 1.000 1 6 hm5C_associated_SNPs_26161 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643929733 1 0.999536712140534 hm5C_site_26739 DeepMRMD:1;iRNA_m5C:0.999536712140534 26740 chr6 53660211 53660211 1 + G C LUAD 53660192 + 53660172 53660212 41 GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGA GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCCA < 41bp 1 0.512116073973203 1 0.409901976585388 experiment 0.975767852053594 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660192 chr6:53660211 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_26162 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26740 DeepMRMD:1;iRNA_m5C:0.999536712157815 26741 chr11 134014888 134014888 1 + T A LUAD 134014879 + 134014859 134014899 41 TTTCCACTTAAACTCTGAAACAGGCACTTTGGTAAGATCTC TTTCCACTTAAACTCTGAAACAGGCACTTAGGTAAGATCTC < 41bp 1 0.393766198096961 1 0.664099395275116 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control JAM3 ENSG00000166086 CDS Human protein_coding chr11:134014879 chr11:134014888 stopgain 1.000 1 30 hm5C_associated_SNPs_26163 0 0 0 0 1 nucleoplasm 1 0.500231643929868 0.671801209449768 0.999536712140264 hm5C_site_26741 DeepMRMD:0.671801209449768;iRNA_m5C:0.999536712140264 26742 chr16 675984 675984 1 + C T LUAD 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCCCGCGTGTACGCAGAG < 41bp 1 0.506765069167733 1 0.723743915557861 experiment 0.986469861664534 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675984 nonsynonymous SNV 0.002 2 31 hm5C_associated_SNPs_26164 0 0 0 0 2 Ribosome 1 0.500231643918265 0.552512168884278 0.999536712163469 hm5C_site_26742 DeepMRMD:0.552512168884278;iRNA_m5C:0.999536712163469 26743 chr9 109773236 109773236 1 + G C LUAD 109773231 + 109773211 109773251 41 CCATTGGGATAGACTTTTCCCTAAAGAATGAAACAGTAGCC CCATTGGGATAGACTTTTCCCTAAACAATGAAACAGTAGCC < 41bp 1 0.315805340627725 1 0.277455419301987 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109773231 chr9:109773236 nonsynonymous SNV 0.996 0 26 hm5C_associated_SNPs_26165 0 0 1 0 0 exosome 1 0.500231643921088 1 0.999536712157823 hm5C_site_26743 DeepMRMD:1;iRNA_m5C:0.999536712157823 26744 chr19 4423358 4423358 1 + A G LUAD 4423372 + 4423352 4423392 41 GGAAAAAGGAAGAAGAGAAACGGTTAAGAGAAGAAGAGAAG GGAAAAGGGAAGAAGAGAAACGGTTAAGAGAAGAAGAGAAG < 41bp 1 0.176417650220058 1 0.469915986061096 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4423372 chr19:4423358 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_26166 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26744 DeepMRMD:1;iRNA_m5C:0.999536712157815 26745 chr13 52293449 52293449 1 + A T LUAD 52293456 + 52293436 52293476 41 GGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA GGCAGCGCCTGGGTGGTTATCGGACCAGTGCTGTGGCCTCA < 41bp 1 0.555653842544776 1 0.919079542160034 experiment 0.888692314910449 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52293456 chr13:52293449 synonymous SNV . 0 14 hm5C_associated_SNPs_26167 0 0 1 0 1 Cytosol 1 0.500231643921838 0.161840915679932 0.999536712156324 hm5C_site_26745 DeepMRMD:0.161840915679932;iRNA_m5C:0.999536712156324 26746 chr11 64950964 64950964 1 + G T LUAD 64950967 + 64950947 64950987 41 GACTGCTGGCTCTTGGCGGCCATCGCCTCCCTCACTCTCAA GACTGCTGGCTCTTGGCTGCCATCGCCTCCCTCACTCTCAA < 41bp 1 0.291033560671282 1 0.167127281427383 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950967 chr11:64950964 synonymous SNV . 0 18 hm5C_associated_SNPs_26169 0 0 1 0 2 Ribosome 1 0.500231643920832 1 0.999536712158336 hm5C_site_26746 DeepMRMD:1;iRNA_m5C:0.999536712158336 26747 chr1 228479688 228479688 1 + G T LUAD 228479689 + 228479669 228479709 41 GTGTGAACTGAGCAAGGTGGCCCCTGTGGAGTGGAGGAAGG GTGTGAACTGAGCAAGGTGTCCCCTGTGGAGTGGAGGAAGG < 41bp 1 0.0560750905162959 1 0.223068356513977 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228479689 chr1:228479688 nonsynonymous SNV 0.012 1 20 hm5C_associated_SNPs_26170 0 0 1 0 1 Ribosome 1 0.500231643845663 1 0.999536712308674 hm5C_site_26747 DeepMRMD:1;iRNA_m5C:0.999536712308674 26748 chr7 32598970 32598970 1 + T A LUAD 32598978 + 32598958 32598998 41 AGAGTCTTCCAATTACTGTACAACCTCAAGCTAATACGGGA AGAGTCTTCCAAATACTGTACAACCTCAAGCTAATACGGGA < 41bp 1 0.140184832921989 1 0.0681644082069397 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AVL9 ENSG00000105778 CDS Human protein_coding chr7:32598978 chr7:32598970 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_26171 0 0 1 0 0 Ribosome 1 0.500231643921028 1 0.999536712157943 hm5C_site_26748 DeepMRMD:1;iRNA_m5C:0.999536712157943 26749 chr4 154318419 154318419 1 + A T LUAD 154318425 + 154318405 154318445 41 CACTTCGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA CACTTCGAGACCAATGGGAACAGCTAAAGGCAGAAGTAGAA < 41bp 1 0.262352903555626 1 0.402300715446472 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MND1 ENSG00000121211 CDS Human protein_coding chr4:154318425 chr4:154318419 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_26172 0 0 1 0 2 chromatin 1 0.500231643919723 1 0.999536712160555 hm5C_site_26749 DeepMRMD:1;iRNA_m5C:0.999536712160555 26750 chr9 131345051 131345051 1 + C A LUAD 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGA < 41bp 1 0.118527276077987 1 0.11281880736351 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345051 nonsynonymous SNV 0.997 3 41 hm5C_associated_SNPs_26173 0 0 1 0 2 Nucleus 1 0.500231643927901 1 0.999536712144197 hm5C_site_26750 DeepMRMD:1;iRNA_m5C:0.999536712144197 26751 chr1 36754831 36754831 1 + G A LUAD 36754839 + 36754819 36754859 41 AGAAGCCTTTTCGGGGCAGTCAGTCTCCCAAAAGGTATAAG AGAAGCCTTTTCAGGGCAGTCAGTCTCCCAAAAGGTATAAG < 41bp 1 0.176168850821703 1 0.217451453208923 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36754839 chr1:36754831 nonsynonymous SNV 0.998 2 13 hm5C_associated_SNPs_26174 0 0 1 0 0 Nucleus 1 0.500231643921117 1 0.999536712157767 hm5C_site_26751 DeepMRMD:1;iRNA_m5C:0.999536712157767 26752 chr6 44221294 44221294 1 + G T LUAD 44221288 + 44221268 44221308 41 CAGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGAT CAGTTCCTGATGAGATCCCCCCTCTCTAGGGCGATGAGGAT < 41bp 1 0.0508437026672261 1 0.067956268787384 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221288 chr6:44221294 stopgain 0.294 0 27 hm5C_associated_SNPs_26175 0 0 1 0 1 Nucleus 1 0.500231643919462 1 0.999536712161077 hm5C_site_26752 DeepMRMD:1;iRNA_m5C:0.999536712161077 26753 chr6 44221294 44221294 1 + G T LUAD 44221289 + 44221269 44221309 41 AGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATG AGTTCCTGATGAGATCCCCCCTCTCTAGGGCGATGAGGATG < 41bp 1 0.240679855442454 1 0.458399325609207 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221289 chr6:44221294 stopgain 0.294 0 26 hm5C_associated_SNPs_26176 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26753 DeepMRMD:1;iRNA_m5C:0.999536712157815 26754 chr4 87691037 87691037 1 + G A LUAD 87691057 + 87691037 87691077 41 GCTCTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG ACTCTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG < 41bp 1 0.336810449479072 1 0.743921458721161 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691057 chr4:87691037 synonymous SNV . 0 1 hm5C_associated_SNPs_26177 0 0 1 0 1 Ribosome 1 0.500231643921092 0.512157082557678 0.999536712157815 hm5C_site_26754 DeepMRMD:0.512157082557678;iRNA_m5C:0.999536712157815 26755 chr16 24835027 24835027 1 + G T LUAD 24835030 + 24835010 24835050 41 ATTCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCC ATTCCACAAGCCTGTGGTGTCCCCCAAGCAGCAGCGACCCC < 41bp 1 0.215762108152939 1 0.131419032812119 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835030 chr16:24835027 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_26178 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_26755 DeepMRMD:1;iRNA_m5C:0.999536712157814 26756 chr16 24835027 24835027 1 + G T LUAD 24835031 + 24835011 24835051 41 TTCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCC TTCCACAAGCCTGTGGTGTCCCCCAAGCAGCAGCGACCCCC < 41bp 1 0.614182858950015 1 0.172535270452499 experiment 0.77163428209997 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835031 chr16:24835027 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_26179 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26756 DeepMRMD:1;iRNA_m5C:0.999536712157815 26757 chr16 24835027 24835027 1 + G T LUAD 24835033 + 24835013 24835053 41 CCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCGA CCACAAGCCTGTGGTGTCCCCCAAGCAGCAGCGACCCCCGA < 41bp 1 0.234589383187287 1 0.387530267238617 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835033 chr16:24835027 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_26181 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26757 DeepMRMD:1;iRNA_m5C:0.999536712157815 26758 chr16 24835027 24835027 1 + G T LUAD 24835034 + 24835014 24835054 41 CACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCGAG CACAAGCCTGTGGTGTCCCCCAAGCAGCAGCGACCCCCGAG < 41bp 1 0.443252718040832 1 0.430714815855026 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835034 chr16:24835027 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_26182 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_26758 DeepMRMD:1;iRNA_m5C:0.999536712157815 26759 chr7 2686509 2686509 1 + C T LUAD 2686507 + 2686487 2686527 41 GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTCGC GCCCTGCTGCTCCTGGGGGCCGTCGCCCTGGCCTGCCTCGC < 41bp 1 0.295751789139809 1 0.545461714267731 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686507 chr7:2686509 nonsynonymous SNV 0.250 0 23 hm5C_associated_SNPs_26183 0 0 1 0 1 Ribosome 1 0.500231643921093 0.909076571464538 0.999536712157815 hm5C_site_26759 DeepMRMD:0.909076571464538;iRNA_m5C:0.999536712157815 26760 chr12 132546780 132546780 1 + C T LUAD 132546776 + 132546756 132546796 41 AACGACTCAGGGTGTTCGAGCGGTCACTTCTGTGACAGCCT AACGACTCAGGGTGTTCGAGCGGTTACTTCTGTGACAGCCT < 41bp 1 0.0904410794382227 1 0.384392619132996 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546776 chr12:132546780 synonymous SNV . 0 25 hm5C_associated_SNPs_26184 0 0 1 0 1 Cytosol 1 0.500231643762885 1 0.999536712474229 hm5C_site_26760 DeepMRMD:1;iRNA_m5C:0.999536712474229 26761 chr14 61201638 61201638 1 + A T LUAD 61201633 + 61201613 61201653 41 CACCAAATATCGGAACCCCTCCTTGAAGCTGATGGTGAATG CACCAAATATCGGAACCCCTCCTTGTAGCTGATGGTGAATG < 41bp 1 0.139479573075304 1 0.12993249297142 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61201633 chr14:61201638 stopgain 0.997 1 26 hm5C_associated_SNPs_26185 0 0 1 0 1 Ribosome 1 0.500231929167174 1 0.999536141665653 hm5C_site_26761 DeepMRMD:1;iRNA_m5C:0.999536141665653 26762 chr17 40695718 40695718 1 + G T LUAD 40695702 + 40695682 40695722 41 GCCCCGCCTTCCGCTACGACCTGCTGGACCTCACTCGGCAG GCCCCGCCTTCCGCTACGACCTGCTGGACCTCACTCTGCAG < 41bp 1 0.430002363765478 1 0.334145605564117 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAGLU ENSG00000108784 CDS Human protein_coding chr17:40695702 chr17:40695718 nonsynonymous SNV 0.809 5 37 hm5C_associated_SNPs_26186 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643873004 1 0.999536712253992 hm5C_site_26762 DeepMRMD:1;iRNA_m5C:0.999536712253992 26763 chr5 54456044 54456044 1 + G A LUAD 54456062 + 54456042 54456082 41 CCGCTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT CCACTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT < 41bp 1 0.500625252458508 1 0.438946038484573 experiment 0.998749495082984 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPX8 ENSG00000164294 CDS Human protein_coding chr5:54456062 chr5:54456044 synonymous SNV . 0 3 hm5C_associated_SNPs_26188 0 0 1 0 1 Endoplasmic reticulum 1 0.500231606522574 1 0.999536786954852 hm5C_site_26763 DeepMRMD:1;iRNA_m5C:0.999536786954852 26764 chr16 11133706 11133706 1 + A G LUAD 11133688 + 11133668 11133708 41 AGACCACCTACAACCACCCGCTAGCTGAAAGACTCATCAGG AGACCACCTACAACCACCCGCTAGCTGAAAGACTCATCGGG < 41bp 1 0.124504225546503 1 0.387456685304642 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133688 chr16:11133706 nonsynonymous SNV 0.991 3 39 hm5C_associated_SNPs_26189 0 0 1 0 2 Cytosol 1 0.500231778652027 1 0.999536442695945 hm5C_site_26764 DeepMRMD:1;iRNA_m5C:0.999536442695945 26765 chr16 11133706 11133706 1 + A G LUAD 11133722 + 11133702 11133742 41 CATCAGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACT CATCGGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACT < 41bp 1 0.310680117153693 1 0.0139681100845337 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133722 chr16:11133706 nonsynonymous SNV 0.991 3 5 hm5C_associated_SNPs_26190 0 0 1 0 2 Cytosol 1 0.500231643769423 1 0.999536712461154 hm5C_site_26765 DeepMRMD:1;iRNA_m5C:0.999536712461154 26766 chr16 11133706 11133706 1 + A G LUAD 11133726 + 11133706 11133746 41 AGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACTTGGG GGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACTTGGG < 41bp 1 0.0809649954498396 1 0.0444182157516479 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133726 chr16:11133706 nonsynonymous SNV 0.991 3 1 hm5C_associated_SNPs_26191 0 0 1 0 2 Cytosol 1 0.500233008313589 1 0.999533983372823 hm5C_site_26766 DeepMRMD:1;iRNA_m5C:0.999533983372823 26767 chr12 104340715 104340715 1 + C G LUAD 104340701 + 104340681 104340721 41 ATGCTTCGCCTCAGTTTGAACATTGACCCTGATGCAAAGGT ATGCTTCGCCTCAGTTTGAACATTGACCCTGATGGAAAGGT < 41bp 1 0.0868667589813146 1 0.238312512636185 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340701 chr12:104340715 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_26192 0 0 1 0 1 Nucleus 1 0.500231643921841 1 0.999536712156317 hm5C_site_26767 DeepMRMD:1;iRNA_m5C:0.999536712156317 26768 chr12 104340715 104340715 1 + C G LUAD 104340707 + 104340687 104340727 41 CGCCTCAGTTTGAACATTGACCCTGATGCAAAGGTTTGTAT CGCCTCAGTTTGAACATTGACCCTGATGGAAAGGTTTGTAT < 41bp 1 0.257201770598508 1 0.055212527513504 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340707 chr12:104340715 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_26193 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26768 DeepMRMD:1;iRNA_m5C:0.999536712157815 26769 chr12 104340715 104340715 1 + C G LUAD 104340709 + 104340689 104340729 41 CCTCAGTTTGAACATTGACCCTGATGCAAAGGTTTGTATCC CCTCAGTTTGAACATTGACCCTGATGGAAAGGTTTGTATCC < 41bp 1 0.456682045974393 1 0.227345913648605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340709 chr12:104340715 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_26194 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26769 DeepMRMD:1;iRNA_m5C:0.999536712157815 26770 chr7 142460350 142460350 1 + T C LUAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCCACC < 41bp 1 0.449824656561836 1 0.217561632394791 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460350 nonsynonymous SNV 0.343 5 38 hm5C_associated_SNPs_26195 0 0 0 0 2 Cytosol 1 0.500231643921526 1 0.999536712156949 hm5C_site_26770 DeepMRMD:1;iRNA_m5C:0.999536712156949 26771 chr7 142460350 142460350 1 + T C LUAD 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTA < 41bp 1 0.0308231749418951 1 0.101603388786316 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460350 nonsynonymous SNV 0.343 5 26 hm5C_associated_SNPs_26196 0 0 0 0 2 Cytosol 1 0.500231643921166 1 0.999536712157667 hm5C_site_26771 DeepMRMD:1;iRNA_m5C:0.999536712157667 26772 chr7 142460350 142460350 1 + T C LUAD 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTAC < 41bp 1 0.183772882135676 1 0.199969828128815 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460350 nonsynonymous SNV 0.343 5 25 hm5C_associated_SNPs_26197 0 0 0 0 2 Cytosol 1 0.500231527355419 1 0.999536945289162 hm5C_site_26772 DeepMRMD:1;iRNA_m5C:0.999536945289162 26773 chr7 142460350 142460350 1 + T C LUAD 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCA < 41bp 1 0.0623206345888206 1 0.102708756923676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460350 nonsynonymous SNV 0.343 5 23 hm5C_associated_SNPs_26198 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26773 DeepMRMD:1;iRNA_m5C:0.999536712157815 26774 chr7 142460350 142460350 1 + T C LUAD 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCAG < 41bp 1 0.090137558989128 1 0.146954149007797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460350 nonsynonymous SNV 0.343 5 22 hm5C_associated_SNPs_26199 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26774 DeepMRMD:1;iRNA_m5C:0.999536712157815 26775 chr7 142460350 142460350 1 + T C LUAD 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCAGCAA < 41bp 1 0.374434695626298 1 0.502806305885315 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460350 nonsynonymous SNV 0.343 5 19 hm5C_associated_SNPs_26200 0 0 0 0 2 Cytosol 1 0.500231643921092 0.99438738822937 0.999536712157815 hm5C_site_26775 DeepMRMD:0.99438738822937;iRNA_m5C:0.999536712157815 26776 chr7 142460350 142460350 1 + T C LUAD 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCCACCCTGGAAAGATTACCAGCAAC < 41bp 1 0.23323743547366 1 0.634869456291199 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460350 nonsynonymous SNV 0.343 5 18 hm5C_associated_SNPs_26201 0 0 0 0 2 Cytosol 1 0.500231643921091 0.730261087417602 0.999536712157819 hm5C_site_26776 DeepMRMD:0.730261087417602;iRNA_m5C:0.999536712157819 26777 chr7 142460350 142460350 1 + T C LUAD 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCCACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG < 41bp 1 0.172841264653147 1 0.103430211544037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460350 nonsynonymous SNV 0.343 5 5 hm5C_associated_SNPs_26203 0 0 0 0 2 Cytosol 1 0.500231643921115 1 0.99953671215777 hm5C_site_26777 DeepMRMD:1;iRNA_m5C:0.99953671215777 26778 chr7 142460350 142460350 1 + T C LUAD 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCCACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG < 41bp 1 0.66222490058765 1 0.769735217094421 experiment 0.675550198824699 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460350 nonsynonymous SNV 0.343 5 4 hm5C_associated_SNPs_26204 0 0 0 0 2 Cytosol 1 0.500235354292628 0.460529565811158 0.999529291414744 hm5C_site_26778 DeepMRMD:0.460529565811158;iRNA_m5C:0.999529291414744 26779 chr7 142460350 142460350 1 + T C LUAD 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT CACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT < 41bp 1 0.469832629559462 1 0.626040816307068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460350 nonsynonymous SNV 0.343 5 1 hm5C_associated_SNPs_26205 0 0 0 0 2 Cytosol 1 0.500231643921092 0.747918367385864 0.999536712157815 hm5C_site_26779 DeepMRMD:0.747918367385864;iRNA_m5C:0.999536712157815 26780 chr11 69456155 69456155 1 + A C LUAD 69456153 + 69456133 69456173 41 CCCGATGCCAACCTCCTCAACGACCGGGTGCTGCGGGCCAT CCCGATGCCAACCTCCTCAACGCCCGGGTGCTGCGGGCCAT < 41bp 1 0.598690363244307 1 0.161620736122131 experiment 0.802619273511387 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCND1 ENSG00000110092 CDS Human protein_coding chr11:69456153 chr11:69456155 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_26206 0 0 1 0 0 Ribosome 1 0.500231644023917 1 0.999536711952166 hm5C_site_26780 DeepMRMD:1;iRNA_m5C:0.999536711952166 26781 chr2 235949751 235949751 1 + A G LUAD 235949741 + 235949721 235949761 41 ACATCCCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAAC ACATCCCCTCCTCCTATGTGCAGCCCTTGAGCTACCGGAAC < 41bp 1 0.169833310372433 1 0.195490509271622 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235949741 chr2:235949751 nonsynonymous SNV 0.968 1 31 hm5C_associated_SNPs_26207 0 0 1 0 0 cytosol 1 0.500231643949354 1 0.999536712101291 hm5C_site_26781 DeepMRMD:1;iRNA_m5C:0.999536712101291 26782 chr2 235949751 235949751 1 + A G LUAD 235949744 + 235949724 235949764 41 TCCCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAACTCA TCCCCTCCTCCTATGTGCAGCCCTTGAGCTACCGGAACTCA < 41bp 1 0.0188363049366832 1 0.0282925963401794 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235949744 chr2:235949751 nonsynonymous SNV 0.968 1 28 hm5C_associated_SNPs_26208 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26782 DeepMRMD:1;iRNA_m5C:0.999536712157815 26783 chr2 235949751 235949751 1 + A G LUAD 235949745 + 235949725 235949765 41 CCCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAACTCAA CCCCTCCTCCTATGTGCAGCCCTTGAGCTACCGGAACTCAA < 41bp 1 0.021731550779309 1 0.102258324623108 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235949745 chr2:235949751 nonsynonymous SNV 0.968 1 27 hm5C_associated_SNPs_26209 0 0 1 0 0 cytosol 1 0.500231631419364 1 0.999536737161272 hm5C_site_26783 DeepMRMD:1;iRNA_m5C:0.999536737161272 26784 chr6 27101043 27101043 1 + G A LUAD 27101032 + 27101012 27101052 41 GGTGCTGGAGTACCTGACCGCCGAGATCCTGGAACTGGCGG GGTGCTGGAGTACCTGACCGCCGAGATCCTGAAACTGGCGG < 41bp 1 0.583839975198455 1 0.589303493499756 experiment 0.83232004960309 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101032 chr6:27101043 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_26210 0 0 1 0 0 Ribosome 1 0.500231643921092 0.821393013000488 0.999536712157815 hm5C_site_26784 DeepMRMD:0.821393013000488;iRNA_m5C:0.999536712157815 26785 chr6 27101043 27101043 1 + G A LUAD 27101054 + 27101034 27101074 41 GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACAA GAGATCCTGAAACTGGCGGGCAACGCGGCCCGCGACAACAA < 41bp 1 0.500124047467162 1 0.517935752868652 experiment 0.999751905065677 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101054 chr6:27101043 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_26212 0 0 1 0 0 Ribosome 1 0.500231643921561 0.964128494262696 0.999536712156878 hm5C_site_26785 DeepMRMD:0.964128494262696;iRNA_m5C:0.999536712156878 26786 chr6 27101043 27101043 1 + G A LUAD 27101062 + 27101042 27101082 41 GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC GAAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC < 41bp 1 0.314415631447084 1 0.272582471370697 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101062 chr6:27101043 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_26213 0 0 1 0 0 Ribosome 1 0.500231643874778 1 0.999536712250443 hm5C_site_26786 DeepMRMD:1;iRNA_m5C:0.999536712250443 26787 chr6 27101043 27101043 1 + G A LUAD 27101063 + 27101043 27101083 41 GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG AAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG < 41bp 1 0.39528136648427 1 0.153074681758881 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101063 chr6:27101043 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_26214 0 0 1 0 0 Ribosome 1 0.50023164391903 1 0.999536712161939 hm5C_site_26787 DeepMRMD:1;iRNA_m5C:0.999536712161939 26788 chr17 7983194 7983194 1 + G T LUAD 7983202 + 7983182 7983222 41 GGATCAGGCCGGGGTTGACGCCGTTGAGGTACTGGTACCCA GGATCAGGCCGGTGTTGACGCCGTTGAGGTACTGGTACCCA < 41bp 1 0.345351953029358 1 0.223461508750916 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7983202 chr17:7983194 nonsynonymous SNV 0.986 5 13 hm5C_associated_SNPs_26215 0 0 0 0 1 exosome 1 0.500231645625011 1 0.999536708749978 hm5C_site_26788 DeepMRMD:1;iRNA_m5C:0.999536708749978 26789 chr10 118313347 118313347 1 + A G LUAD 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACCATTGGACGCATCGCAGGTT < 41bp 1 0.145379015021065 1 0.0501827597618103 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313347 nonsynonymous SNV 0.954 5 35 hm5C_associated_SNPs_26216 0 0 0 0 1 unknown 1 0.50023163799856 1 0.999536724002881 hm5C_site_26789 DeepMRMD:1;iRNA_m5C:0.999536724002881 26790 chr10 118313347 118313347 1 + A G LUAD 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACCATTGGACGCATCGCAGGTTG < 41bp 1 0.497839403641734 1 0.130725413560867 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313347 nonsynonymous SNV 0.954 5 34 hm5C_associated_SNPs_26217 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_26790 DeepMRMD:1;iRNA_m5C:0.999536712157815 26791 chr1 110034140 110034140 1 + G C LUAD 110034134 + 110034114 110034154 41 TCAGCTGGAGAACCGGGGAGCAGCTGGACACCCAGCCAAGG TCAGCTGGAGAACCGGGGAGCAGCTGCACACCCAGCCAAGG < 41bp 1 0.39333888387002 1 0.581644713878632 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110034134 chr1:110034140 nonsynonymous SNV 0.965 3 27 hm5C_associated_SNPs_26218 0 0 0 0 0 nucleoplasm 1 0.500231643921121 0.836710572242736 0.999536712157759 hm5C_site_26791 DeepMRMD:0.836710572242736;iRNA_m5C:0.999536712157759 26792 chr19 13264219 13264219 1 + G T LUAD 13264217 + 13264197 13264237 41 CCTCTGACCCTCGCCTGCACCCGCCCCGAGAAGCCGAGTCC CCTCTGACCCTCGCCTGCACCCTCCCCGAGAAGCCGAGTCC < 41bp 1 0.0737518433045356 1 0.0616758167743683 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IER2 ENSG00000160888 CDS Human protein_coding chr19:13264217 chr19:13264219 synonymous SNV . 0 23 hm5C_associated_SNPs_26219 0 0 1 0 0 Ribosome 1 0.500231643921087 1 0.999536712157825 hm5C_site_26792 DeepMRMD:1;iRNA_m5C:0.999536712157825 26793 chr11 118997723 118997723 1 + C T LUAD 118997717 + 118997697 118997737 41 CTACAGTGTGAGTGGGGGTCCTGCTCCTTTGTGTGCTCAAC CTACAGTGTGAGTGGGGGTCCTGCTCTTTTGTGTGCTCAAC < 41bp 1 0.416180332897656 1 0.400350540876389 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HINFP ENSG00000172273 CDS Human protein_coding chr11:118997717 chr11:118997723 synonymous SNV . 0 27 hm5C_associated_SNPs_26220 0 0 1 0 0 Cytosol 1 0.500231632031075 1 0.99953673593785 hm5C_site_26793 DeepMRMD:1;iRNA_m5C:0.99953673593785 26794 chr19 47491298 47491298 1 + G C LUAD 47491283 + 47491263 47491303 41 ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCT ATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGACAGTCT < 41bp 1 0.390934784219615 1 0.404889047145844 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491283 chr19:47491298 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_26221 0 0 1 0 2 Ribosome 1 0.500238993642485 1 0.99952201271503 hm5C_site_26794 DeepMRMD:1;iRNA_m5C:0.99952201271503 26795 chr2 171818217 171818217 1 + C T LUAD 171818210 + 171818190 171818230 41 TTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC TTATTGCCACCACAAGTAAACCAGTCCTTCACTTCTGTGCC < 41bp 1 0.215165798144248 1 0.0841170847415924 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818210 chr2:171818217 nonsynonymous SNV 0.992 1 28 hm5C_associated_SNPs_26222 0 0 1 0 2 Ribosome 1 0.500231892773046 1 0.999536214453907 hm5C_site_26795 DeepMRMD:1;iRNA_m5C:0.999536214453907 26796 chr20 36149769 36149769 1 + C T LUAD 36149751 - 36149731 36149771 41 ATGAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGT ATAAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGT < 41bp 1 0.529347612276973 1 0.522792100906372 experiment 0.941304775446054 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human protein_coding chr20:36149751 chr20:36149769 synonymous SNV . 0 3 hm5C_associated_SNPs_26223 0 0 1 0 2 exosome 1 0.500234107162446 0.954415798187256 0.999531785675108 hm5C_site_26796 DeepMRMD:0.954415798187256;iRNA_m5C:0.999531785675108 26797 chr20 36149769 36149769 1 + C T LUAD 36149752 - 36149732 36149772 41 GATGAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGG GATAAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGG < 41bp 1 0.267623611684503 1 0.209462463855743 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human protein_coding chr20:36149752 chr20:36149769 synonymous SNV . 0 4 hm5C_associated_SNPs_26224 0 0 1 0 2 exosome 1 0.500231643907585 1 0.99953671218483 hm5C_site_26797 DeepMRMD:1;iRNA_m5C:0.99953671218483 26798 chr15 50782575 50782575 1 + A C LUAD 50782564 + 50782544 50782584 41 TCATCTGCACCTCCTTCCACCCCTCCAACTCATAAAGCCAA TCATCTGCACCTCCTTCCACCCCTCCAACTCCTAAAGCCAA < 41bp 1 0.0417352234268185 1 0.203920006752014 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50782564 chr15:50782575 nonsynonymous SNV 1.000 0 32 hm5C_associated_SNPs_26226 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26798 DeepMRMD:1;iRNA_m5C:0.999536712157815 26799 chr17 39978046 39978046 1 + G T LUAD 39978062 + 39978042 39978082 41 CAAGGATGGCGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT CAAGTATGGCGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT < 41bp 1 0.511313335971648 1 0.722146451473236 experiment 0.977373328056704 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39978062 chr17:39978046 nonsynonymous SNV 0.912 4 5 hm5C_associated_SNPs_26227 0 0 1 0 1 Nucleus 1 0.500231643921092 0.555707097053528 0.999536712157815 hm5C_site_26799 DeepMRMD:0.555707097053528;iRNA_m5C:0.999536712157815 26800 chr15 67073643 67073643 1 + G T LUAD 67073651 + 67073631 67073671 41 CTGGACGCGCCCGGCGGCCGCGCCCTGGTCGTGCGCAAGGT CTGGACGCGCCCTGCGGCCGCGCCCTGGTCGTGCGCAAGGT < 41bp 1 0.41970818774368 1 0.168696820735931 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SMAD6 ENSG00000137834 CDS Human protein_coding chr15:67073651 chr15:67073643 nonsynonymous SNV 0.996 4 13 hm5C_associated_SNPs_26228 0 0 1 0 0 Cytosol 1 0.500231643921116 1 0.999536712157767 hm5C_site_26800 DeepMRMD:1;iRNA_m5C:0.999536712157767 26801 chr9 7174678 7174678 1 + C A LUAD 7174666 + 7174646 7174686 41 TTTAAGAATGAATATGTGGCCGACCCTGTATACCGCACTTT TTTAAGAATGAATATGTGGCCGACCCTGTATAACGCACTTT < 41bp 1 0.120788357514795 1 0.0637040436267853 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4C ENSG00000107077 CDS Human protein_coding chr9:7174666 chr9:7174678 stopgain 0.990 0 33 hm5C_associated_SNPs_26230 0 0 1 0 0 Nucleus 1 0.500231643921115 1 0.99953671215777 hm5C_site_26801 DeepMRMD:1;iRNA_m5C:0.99953671215777 26802 chrX 73044544 73044544 1 + C A LUAD 73044553 - 73044533 73044573 41 GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGT GAGATCCAGACCGAAAGTCACTTAATTCATCTTGCGAATGT < 41bp 1 0.130063910808732 1 0.031955897808075 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044553 chrX:73044544 . . 0 30 hm5C_associated_SNPs_26231 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_26802 DeepMRMD:1;iRNA_m5C:0.999536712157815 26803 chrX 73044544 73044544 1 + C A LUAD 73044555 - 73044535 73044575 41 GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAAT GTGAGATCCAGACCGAAAGTCACTTAATTCATCTTGCGAAT < 41bp 1 0.0767115049419079 1 0.0437181890010834 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044555 chrX:73044544 . . 0 32 hm5C_associated_SNPs_26232 0 0 1 1 0 unknown 1 0.500231643920925 1 0.99953671215815 hm5C_site_26803 DeepMRMD:1;iRNA_m5C:0.99953671215815 26804 chrX 73046470 73046470 1 + G T LUAD 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAA < 41bp 1 0.605874590821604 1 0.707633137702942 experiment 0.788250818356792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046470 . . 0 41 hm5C_associated_SNPs_26233 0 0 1 11 0 unknown 1 0.500231643921092 0.584733724594116 0.999536712157815 hm5C_site_26804 DeepMRMD:0.584733724594116;iRNA_m5C:0.999536712157815 26805 chr7 98528439 98528439 1 + G T LUAD 98528424 + 98528404 98528444 41 AGACATTCCTGAAAGCACTTCTCTTTGTCATGATGGACTTA AGACATTCCTGAAAGCACTTCTCTTTGTCATGATGTACTTA < 41bp 1 0.0423969553469467 1 0.140683174133301 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528424 chr7:98528439 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_26234 0 0 1 0 1 Nucleus 1 0.500231731980645 1 0.99953653603871 hm5C_site_26805 DeepMRMD:1;iRNA_m5C:0.99953653603871 26806 chr7 98528439 98528439 1 + G T LUAD 98528441 + 98528421 98528461 41 CTTCTCTTTGTCATGATGGACTTAACTGGAGAGGTAGGTGA CTTCTCTTTGTCATGATGTACTTAACTGGAGAGGTAGGTGA < 41bp 1 0.119082205614942 1 0.0902923345565796 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528441 chr7:98528439 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_26235 0 0 1 0 1 Nucleus 1 0.500231644041411 1 0.999536711917179 hm5C_site_26806 DeepMRMD:1;iRNA_m5C:0.999536711917179 26807 chr7 36445887 36445887 1 + A T LUAD 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCTG < 41bp 1 0.569817662435417 1 0.357682853937149 experiment 0.860364675129166 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445887 synonymous SNV . 0 40 hm5C_associated_SNPs_26236 0 0 1 0 1 Nucleus 1 0.500232113212441 1 0.999535773575118 hm5C_site_26807 DeepMRMD:1;iRNA_m5C:0.999535773575118 26808 chr15 45003799 45003799 1 + G T LUAD 45003787 + 45003767 45003807 41 CTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATC CTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGTAGGCTATC < 41bp 1 0.138604235078904 1 0.103954315185547 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B2M ENSG00000166710 CDS Human protein_coding chr15:45003787 chr15:45003799 stopgain 0.056 0 33 hm5C_associated_SNPs_26237 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_26808 DeepMRMD:1;iRNA_m5C:0.999536712157815 26809 chr10 128797638 128797638 1 + G T LUAD 128797628 + 128797608 128797648 41 ATTTTTCAAGTGAGAACTACCTGGTTCGCTGGTCCAGTTCA ATTTTTCAAGTGAGAACTACCTGGTTCGCTTGTCCAGTTCA < 41bp 1 0.201257782676851 1 0.37649992108345 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128797628 chr10:128797638 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_26238 0 0 1 0 2 Nucleus 1 0.500231645557976 1 0.999536708884048 hm5C_site_26809 DeepMRMD:1;iRNA_m5C:0.999536708884048 26810 chr16 22328517 22328517 1 + G A LUAD 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTAAT < 41bp 1 0.166686031115776 1 0.144210040569305 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328517 synonymous SNV . 0 39 hm5C_associated_SNPs_26239 0 0 1 0 2 Ribosome 1 0.500231643944414 1 0.999536712111172 hm5C_site_26810 DeepMRMD:1;iRNA_m5C:0.999536712111172 26811 chr7 129946636 129946636 1 + G C LUAD 129946651 + 129946631 129946671 41 TATCTGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG TATCTCATTACCAGAGGGATCCAGCTATCACCTCCATCTTG < 41bp 1 0.181888388324674 1 0.237688153982162 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946651 chr7:129946636 nonsynonymous SNV 0.990 4 6 hm5C_associated_SNPs_26240 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_26811 DeepMRMD:1;iRNA_m5C:0.999536712157815 26812 chr12 4459029 4459029 1 + G T LUAD 4459031 + 4459011 4459051 41 CAAATTTTGCAAAGATATGACGGTAAAGTATGACTCAAGAC CAAATTTTGCAAAGATATTACGGTAAAGTATGACTCAAGAC < 41bp 1 0.494921194639183 1 0.504848480224609 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TIGAR ENSG00000078237 CDS Human protein_coding chr12:4459031 chr12:4459029 nonsynonymous SNV 0.624 0 19 hm5C_associated_SNPs_26241 0 0 1 0 1 Nucleus 1 0.500560355004518 0.990303039550782 0.998879289990964 hm5C_site_26812 DeepMRMD:0.990303039550782;iRNA_m5C:0.998879289990964 26813 chr12 4459026 4459026 1 + T G LUAD 4459031 + 4459011 4459051 41 CAAATTTTGCAAAGATATGACGGTAAAGTATGACTCAAGAC CAAATTTTGCAAAGAGATGACGGTAAAGTATGACTCAAGAC < 41bp 1 0.47007253287313 1 0.406071037054062 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TIGAR ENSG00000078237 CDS Human protein_coding chr12:4459031 chr12:4459026 nonsynonymous SNV 0.672 1 16 hm5C_associated_SNPs_26242 0 0 1 0 1 Nucleus 1 0.500231643921749 1 0.999536712156503 hm5C_site_26813 DeepMRMD:1;iRNA_m5C:0.999536712156503 26814 chr2 233671355 233671355 1 + C T LUAD 233671347 + 233671327 233671367 41 GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATG GGGTTCCCTTTTCTCCAGGTCCAGCTCCTCCTCCTCATATG < 41bp 1 0.119984989638748 1 0.0547673404216766 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671347 chr2:233671355 synonymous SNV . 0 29 hm5C_associated_SNPs_26243 0 0 1 0 1 Nucleus 1 0.500231643922054 1 0.999536712155892 hm5C_site_26814 DeepMRMD:1;iRNA_m5C:0.999536712155892 26815 chr2 233671355 233671355 1 + C T LUAD 233671348 + 233671328 233671368 41 GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGG GGTTCCCTTTTCTCCAGGTCCAGCTCCTCCTCCTCATATGG < 41bp 1 0.183136705246623 1 0.0759700834751129 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671348 chr2:233671355 synonymous SNV . 0 28 hm5C_associated_SNPs_26244 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26815 DeepMRMD:1;iRNA_m5C:0.999536712157815 26816 chr2 233671355 233671355 1 + C T LUAD 233671351 + 233671331 233671371 41 TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAA TCCCTTTTCTCCAGGTCCAGCTCCTCCTCCTCATATGGTAA < 41bp 1 0.119544706785619 1 0.118804126977921 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671351 chr2:233671355 synonymous SNV . 0 25 hm5C_associated_SNPs_26245 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_26816 DeepMRMD:1;iRNA_m5C:0.999536712157812 26817 chr2 233671355 233671355 1 + C T LUAD 233671354 + 233671334 233671374 41 CTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTA CTTTTCTCCAGGTCCAGCTCCTCCTCCTCATATGGTAAGTA < 41bp 1 0.138126035790418 1 0.1811703145504 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671354 chr2:233671355 synonymous SNV . 0 22 hm5C_associated_SNPs_26246 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26817 DeepMRMD:1;iRNA_m5C:0.999536712157815 26818 chr2 233671355 233671355 1 + C T LUAD 233671356 + 233671336 233671376 41 TTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACC TTTCTCCAGGTCCAGCTCCTCCTCCTCATATGGTAAGTACC < 41bp 1 0.0324468636557143 1 0.239792138338089 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671356 chr2:233671355 synonymous SNV . 0 20 hm5C_associated_SNPs_26247 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26818 DeepMRMD:1;iRNA_m5C:0.999536712157815 26819 chr2 233671355 233671355 1 + C T LUAD 233671357 + 233671337 233671377 41 TTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACCT TTCTCCAGGTCCAGCTCCTCCTCCTCATATGGTAAGTACCT < 41bp 1 0.211168547451518 1 0.112147361040115 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671357 chr2:233671355 synonymous SNV . 0 19 hm5C_associated_SNPs_26248 0 0 1 0 1 Nucleus 1 0.500231643921285 1 0.999536712157431 hm5C_site_26819 DeepMRMD:1;iRNA_m5C:0.999536712157431 26820 chr5 109065175 109065175 1 + G T LUAD 109065166 + 109065146 109065186 41 GTCTGAGATCTCTTACCTTTCAAAGTGGTGGGATATTATAG GTCTGAGATCTCTTACCTTTCAAAGTGGTTGGATATTATAG < 41bp 1 0.345059918468236 1 0.763043403625488 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109065166 chr5:109065175 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_26249 0 0 1 0 1 Cytosol 1 0.50023222740088 0.473913192749024 0.999535545198239 hm5C_site_26820 DeepMRMD:0.473913192749024;iRNA_m5C:0.999535545198239 26821 chr16 67006790 67006790 1 + C T LUAD 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CTCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA < 41bp 1 0.262567156342775 1 0.313679993152618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006790 synonymous SNV . 0 2 hm5C_associated_SNPs_26250 0 0 0 0 1 nucleolus 1 0.500231643921095 1 0.99953671215781 hm5C_site_26821 DeepMRMD:1;iRNA_m5C:0.99953671215781 26822 chr2 10188397 10188397 1 + G T LUAD 10188402 + 10188382 10188422 41 TCCCCAGTTGTCTGTGGGGACTGTGAGACCCATCCTAGCTC TCCCCAGTTGTCTGTTGGGACTGTGAGACCCATCCTAGCTC < 41bp 1 0.572340566919492 1 0.0599119365215302 experiment 0.855318866161016 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KLF11 ENSG00000172059 CDS Human protein_coding chr2:10188402 chr2:10188397 synonymous SNV . 0 16 hm5C_associated_SNPs_26251 0 0 1 0 0 nucleoplasm 1 0.500231643934646 1 0.999536712130708 hm5C_site_26822 DeepMRMD:1;iRNA_m5C:0.999536712130708 26823 chr7 69599543 69599543 1 + G T LUAD 69599551 + 69599531 69599571 41 CCTTCCAGCTTGGGAACAGGCTACTTCGTAAGTCTATCTCA CCTTCCAGCTTGTGAACAGGCTACTTCGTAAGTCTATCTCA < 41bp 1 0.178252716007429 1 0.0315712094306946 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69599551 chr7:69599543 stopgain 1.000 0 13 hm5C_associated_SNPs_26252 0 0 0 0 1 Nucleus 1 0.500231643914648 1 0.999536712170703 hm5C_site_26823 DeepMRMD:1;iRNA_m5C:0.999536712170703 26824 chr7 76111985 76111985 1 + G T LUAD 76111966 + 76111946 76111986 41 CTATCTGGAGCAGCAGGTGGCCAGGGGCAACCAGCTCGTGG CTATCTGGAGCAGCAGGTGGCCAGGGGCAACCAGCTCGTTG < 41bp 1 0.488701556020101 1 0.860993504524231 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DTX2 ENSG00000091073 CDS Human protein_coding chr7:76111966 chr7:76111985 synonymous SNV . 0 40 hm5C_associated_SNPs_26253 0 0 0 0 0 Nucleus 1 0.500231649022348 0.278012990951538 0.999536701955304 hm5C_site_26824 DeepMRMD:0.278012990951538;iRNA_m5C:0.999536701955304 26825 chr17 21731048 21731048 1 + A G LUAD 21731040 + 21731020 21731060 41 GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT GATAAAGAAGGCATCCCCCCCGACCAGCGGAGGCTCATCTT < 41bp 1 0.306630879175833 1 0.449589520692825 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731040 chr17:21731048 nonsynonymous SNV 0.887 2 29 hm5C_associated_SNPs_26254 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26825 DeepMRMD:1;iRNA_m5C:0.999536712157815 26826 chr19 54711356 54711356 1 + G T LUAD 54711362 + 54711342 54711382 41 CGCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAG CGCTCTCCCTACGGTGGTGGCCGCCCGGGCCGCGTGAAGAG < 41bp 1 0.344894900936594 1 0.150362640619278 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711362 chr19:54711356 synonymous SNV . 0 15 hm5C_associated_SNPs_26255 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_26826 DeepMRMD:1;iRNA_m5C:0.999536712157814 26827 chr19 54711356 54711356 1 + G T LUAD 54711363 + 54711343 54711383 41 GCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAGG GCTCTCCCTACGGTGGTGGCCGCCCGGGCCGCGTGAAGAGG < 41bp 1 0.536020744931297 1 0.248681217432022 experiment 0.927958510137405 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711363 chr19:54711356 synonymous SNV . 0 14 hm5C_associated_SNPs_26256 0 0 1 0 1 Ribosome 1 0.500231642086279 1 0.999536715827443 hm5C_site_26827 DeepMRMD:1;iRNA_m5C:0.999536715827443 26828 chr17 21319358 21319358 1 + C A LUAD 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCAGCGGG < 41bp 1 0.593104371836636 1 0.40473073720932 experiment 0.813791256326729 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319358 nonsynonymous SNV 0.967 4 36 hm5C_associated_SNPs_26257 0 0 0 0 0 unknown 1 0.500231692553756 1 0.999536614892488 hm5C_site_26828 DeepMRMD:1;iRNA_m5C:0.999536614892488 26829 chr11 64863748 64863748 1 + C G LUAD 64863739 + 64863719 64863759 41 AACGATGGCGGCGGCAGCTGCCGCCGGGCCTAGCCCGGGGT AACGATGGCGGCGGCAGCTGCCGCCGGGCGTAGCCCGGGGT < 41bp 1 0.243798962756821 1 0.562328517436981 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VPS51 ENSG00000149823 CDS Human protein_coding chr11:64863739 chr11:64863748 nonsynonymous SNV 0.001 1 30 hm5C_associated_SNPs_26259 0 0 1 0 0 Ribosome 1 0.500231643921066 0.875342965126038 0.999536712157868 hm5C_site_26829 DeepMRMD:0.875342965126038;iRNA_m5C:0.999536712157868 26830 chr10 4877971 4877971 1 + C G LUAD 4877959 + 4877939 4877979 41 TTGCCTCTGGACGAGAGCAACATGGTTATTCCCAGTGACAC TTGCCTCTGGACGAGAGCAACATGGTTATTCCGAGTGACAC < 41bp 1 0.607219184410967 1 0.0910830199718475 experiment 0.785561631178066 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4877959 chr10:4877971 synonymous SNV . 0 33 hm5C_associated_SNPs_26261 0 0 1 0 1 chromatin 1 0.500231643879526 1 0.999536712240948 hm5C_site_26830 DeepMRMD:1;iRNA_m5C:0.999536712240948 26831 chr1 200730028 200730028 1 + C G LUAD 200730036 + 200730016 200730056 41 CCAGGAACACATCAAACCACCTGTTGTTAATTTGCTTCTAT CCAGGAACACATGAAACCACCTGTTGTTAATTTGCTTCTAT < 41bp 1 0.218143512465549 1 0.0623067021369934 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200730036 chr1:200730028 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_26262 0 0 1 0 1 chromatin 1 0.500231643921098 1 0.999536712157805 hm5C_site_26831 DeepMRMD:1;iRNA_m5C:0.999536712157805 26832 chr19 1440453 1440453 1 + C G LUAD 1440440 + 1440420 1440460 41 ATCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTA ATCGGGGCCACCCACTCCTCCCGCTTCATCCCTGTCAAGTA < 41bp 1 0.234203837951605 1 0.159734845161438 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440440 chr19:1440453 nonsynonymous SNV 0.941 1 34 hm5C_associated_SNPs_26263 0 0 1 0 0 Ribosome 1 0.500231640721773 1 0.999536718556455 hm5C_site_26832 DeepMRMD:1;iRNA_m5C:0.999536718556455 26833 chr19 1440453 1440453 1 + C G LUAD 1440441 + 1440421 1440461 41 TCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTAA TCGGGGCCACCCACTCCTCCCGCTTCATCCCTGTCAAGTAA < 41bp 1 0.280710597359525 1 0.260784804821014 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440441 chr19:1440453 nonsynonymous SNV 0.941 1 33 hm5C_associated_SNPs_26264 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26833 DeepMRMD:1;iRNA_m5C:0.999536712157815 26834 chr19 39125691 39125691 1 + G C LUAD 39125675 + 39125655 39125695 41 GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCT GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCACATCT < 41bp 1 0.240134337453579 1 0.414335250854492 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125675 chr19:39125691 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_26266 0 0 1 0 2 Cytosol 1 0.500231355640917 1 0.999537288718166 hm5C_site_26834 DeepMRMD:1;iRNA_m5C:0.999537288718166 26835 chr19 39125691 39125691 1 + G C LUAD 39125679 + 39125659 39125699 41 AAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCTTCAT AAATACGGCTGGAGTGCCGACGAGTCGGGGCACATCTTCAT < 41bp 1 0.624291596377646 1 0.515478312969208 experiment 0.751416807244709 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125679 chr19:39125691 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_26267 0 0 1 0 2 Cytosol 1 0.500231643957996 0.969043374061584 0.999536712084008 hm5C_site_26835 DeepMRMD:0.969043374061584;iRNA_m5C:0.999536712084008 26836 chr1 151020365 151020365 1 + G A LUAD 151020375 + 151020355 151020395 41 TCCTGCTGCTGAATCTGGGTCCCCGGGCGGCGGGGGCCCAA TCCTGCTGCTAAATCTGGGTCCCCGGGCGGCGGGGGCCCAA < 41bp 1 0.601644535584878 1 0.108488738536835 experiment 0.796710928830243 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020375 chr1:151020365 synonymous SNV . 0 11 hm5C_associated_SNPs_26268 0 0 1 0 0 Cytosol 1 0.500231643939269 1 0.999536712121462 hm5C_site_26836 DeepMRMD:1;iRNA_m5C:0.999536712121462 26837 chr15 63014669 63014669 1 + C T LUAD 63014677 + 63014657 63014697 41 TTGGCGGAGCTGCGTACCGCCTCGCAGAAGGCAAGTGGAGC TTGGCGGAGCTGTGTACCGCCTCGCAGAAGGCAAGTGGAGC < 41bp 1 0.13532002777506 1 0.0911598205566406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63014677 chr15:63014669 nonsynonymous SNV 0.753 2 13 hm5C_associated_SNPs_26271 0 0 0 0 0 Nucleus 1 0.500231643886424 1 0.999536712227152 hm5C_site_26837 DeepMRMD:1;iRNA_m5C:0.999536712227152 26838 chr3 169710594 169710594 1 + A C LUAD 169710589 + 169710569 169710609 41 GTCCGACAGTGAGGAAAAGTCAGACAGTGAGAAAAAGGAAG GTCCGACAGTGAGGAAAAGTCAGACCGTGAGAAAAAGGAAG < 41bp 1 0.479059294549183 1 0.13385397195816 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SEC62 ENSG00000008952 CDS Human protein_coding chr3:169710589 chr3:169710594 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_26273 0 0 1 0 0 Ribosome 1 0.500351609533489 1 0.999296780933021 hm5C_site_26838 DeepMRMD:1;iRNA_m5C:0.999296780933021 26839 chr3 169710594 169710594 1 + A C LUAD 169710593 + 169710573 169710613 41 GACAGTGAGGAAAAGTCAGACAGTGAGAAAAAGGAAGATGA GACAGTGAGGAAAAGTCAGACCGTGAGAAAAAGGAAGATGA < 41bp 1 0.248636009106146 1 0.292787998914719 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SEC62 ENSG00000008952 CDS Human protein_coding chr3:169710593 chr3:169710594 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_26274 0 0 1 0 0 Ribosome 1 0.500231374633939 1 0.999537250732122 hm5C_site_26839 DeepMRMD:1;iRNA_m5C:0.999537250732122 26840 chr16 14403171 14403171 1 + G T LUAD 14403172 + 14403152 14403192 41 AAATGAGGGACTTTTGGGGGCAGATGTGTTTCCATTCCACT AAATGAGGGACTTTTGGGGTCAGATGTGTTTCCATTCCACT < 41bp 1 0.431782100398602 1 0.375550895929337 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR365A ENSG00000199130 ncRNA_exonic Human miRNA chr16:14403172 chr16:14403171 . . 0 20 hm5C_associated_SNPs_26275 0 0 1 0 0 unknown 1 0.500231348410496 1 0.999537303179008 hm5C_site_26840 DeepMRMD:1;iRNA_m5C:0.999537303179008 26841 chr12 109547647 109547647 1 + T G LUAD 109547637 + 109547617 109547657 41 TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTACAGACG TTCTTGATCTTTTTCAGAAGCGGCACCATGGACTACAGACG < 41bp 1 0.603192383882606 1 0.319119513034821 experiment 0.793615232234788 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547637 chr12:109547647 nonsynonymous SNV 0.963 4 31 hm5C_associated_SNPs_26277 0 0 1 0 1 Ribosome 1 0.500231870533532 1 0.999536258932936 hm5C_site_26841 DeepMRMD:1;iRNA_m5C:0.999536258932936 26842 chr1 22333950 22333950 1 + G T LUAD 22333953 + 22333933 22333973 41 CAGGTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGG CAGGTGGAACTGGTGGGTTTCCACCGTGAAGAAAACCATGG < 41bp 1 0.226184568900952 1 0.381372213363647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333953 chr1:22333950 nonsynonymous SNV 0.269 4 18 hm5C_associated_SNPs_26278 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_26842 DeepMRMD:1;iRNA_m5C:0.999536712157815 26843 chr1 22333950 22333950 1 + G T LUAD 22333956 + 22333936 22333976 41 GTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGGTGT GTGGAACTGGTGGGTTTCCACCGTGAAGAAAACCATGGTGT < 41bp 1 0.489601375475856 1 0.529299736022949 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333956 chr1:22333950 nonsynonymous SNV 0.269 4 15 hm5C_associated_SNPs_26279 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643924253 0.941400527954102 0.999536712151495 hm5C_site_26843 DeepMRMD:0.941400527954102;iRNA_m5C:0.999536712151495 26844 chr1 22333950 22333950 1 + G T LUAD 22333968 + 22333948 22333988 41 GGGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT GGTTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGT < 41bp 1 0.241142917150312 1 0.367904186248779 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333968 chr1:22333950 nonsynonymous SNV 0.269 4 3 hm5C_associated_SNPs_26281 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643919009 1 0.999536712161983 hm5C_site_26844 DeepMRMD:1;iRNA_m5C:0.999536712161983 26845 chr1 22333950 22333950 1 + G T LUAD 22333969 + 22333949 22333989 41 GGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA GTTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTA < 41bp 1 0.635605882856753 1 0.266633123159409 experiment 0.728788234286493 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333969 chr1:22333950 nonsynonymous SNV 0.269 4 2 hm5C_associated_SNPs_26282 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_26845 DeepMRMD:1;iRNA_m5C:0.999536712157815 26846 chr19 30936068 30936068 1 + G T LUAD 30936065 + 30936045 30936085 41 CTCATGGCCAGGGGCATGGCCATGGAACATGGCTTCTTGTC CTCATGGCCAGGGGCATGGCCATTGAACATGGCTTCTTGTC < 41bp 1 0.0889539441066196 1 0.0581617057323456 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936065 chr19:30936068 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_26284 0 0 0 0 0 exosome 1 0.500231367998302 1 0.999537264003397 hm5C_site_26846 DeepMRMD:1;iRNA_m5C:0.999537264003397 26847 chr7 142458502 142458502 1 + A T LUAD 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCTCT < 41bp 1 0.123183625186599 1 0.0491088926792145 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458502 nonsynonymous SNV 0.257 5 39 hm5C_associated_SNPs_26285 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26847 DeepMRMD:1;iRNA_m5C:0.999536712157815 26848 chr7 142458502 142458502 1 + A T LUAD 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCTCTT < 41bp 1 0.285361407456741 1 0.0991651117801666 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458502 nonsynonymous SNV 0.257 5 38 hm5C_associated_SNPs_26286 0 0 0 0 3 Cytosol 1 0.500231643921079 1 0.999536712157841 hm5C_site_26848 DeepMRMD:1;iRNA_m5C:0.999536712157841 26849 chr7 142458502 142458502 1 + A T LUAD 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTC < 41bp 1 0.0787597481104632 1 0.0370593667030334 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458502 nonsynonymous SNV 0.257 5 26 hm5C_associated_SNPs_26289 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26849 DeepMRMD:1;iRNA_m5C:0.999536712157815 26850 chr7 142458502 142458502 1 + A T LUAD 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCT < 41bp 1 0.0295831033146688 1 0.036129891872406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458502 nonsynonymous SNV 0.257 5 23 hm5C_associated_SNPs_26290 0 0 0 0 3 Cytosol 1 0.500231779549895 1 0.99953644090021 hm5C_site_26850 DeepMRMD:1;iRNA_m5C:0.99953644090021 26851 chr7 142458502 142458502 1 + A T LUAD 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCTC < 41bp 1 0.201553680484767 1 0.151674717664719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458502 nonsynonymous SNV 0.257 5 22 hm5C_associated_SNPs_26291 0 0 0 0 3 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_26851 DeepMRMD:1;iRNA_m5C:0.999536712157818 26852 chr7 142458502 142458502 1 + A T LUAD 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.375950684054552 1 0.419716477394104 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458502 nonsynonymous SNV 0.257 5 20 hm5C_associated_SNPs_26292 0 0 0 0 3 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_26852 DeepMRMD:1;iRNA_m5C:0.999536712157814 26853 chr7 142458502 142458502 1 + A T LUAD 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCTCTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.659619792016166 1 0.446258842945099 experiment 0.680760415967669 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458502 nonsynonymous SNV 0.257 5 17 hm5C_associated_SNPs_26293 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26853 DeepMRMD:1;iRNA_m5C:0.999536712157815 26854 chr7 142458502 142458502 1 + A T LUAD 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.267367079476232 1 0.101351976394653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458502 nonsynonymous SNV 0.257 5 8 hm5C_associated_SNPs_26294 0 0 0 0 3 Cytosol 1 0.500230963398986 1 0.999538073202029 hm5C_site_26854 DeepMRMD:1;iRNA_m5C:0.999538073202029 26855 chr7 142458502 142458502 1 + A T LUAD 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0796661182722029 1 0.0487060546875 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458502 nonsynonymous SNV 0.257 5 6 hm5C_associated_SNPs_26295 0 0 0 0 3 Cytosol 1 0.500231645305665 1 0.999536709388669 hm5C_site_26855 DeepMRMD:1;iRNA_m5C:0.999536709388669 26856 chr7 142458502 142458502 1 + A T LUAD 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT < 41bp 1 0.128617584559535 1 0.0725378692150116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458502 nonsynonymous SNV 0.257 5 5 hm5C_associated_SNPs_26296 0 0 0 0 3 Cytosol 1 0.500231399145185 1 0.99953720170963 hm5C_site_26856 DeepMRMD:1;iRNA_m5C:0.99953720170963 26857 chr7 142458502 142458502 1 + A T LUAD 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG < 41bp 1 0.397134490899989 1 0.162282317876816 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458502 nonsynonymous SNV 0.257 5 4 hm5C_associated_SNPs_26297 0 0 0 0 3 Cytosol 1 0.500231664821672 1 0.999536670356657 hm5C_site_26857 DeepMRMD:1;iRNA_m5C:0.999536670356657 26858 chr7 142458502 142458502 1 + A T LUAD 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CTCTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.52676239836844 1 0.659349501132965 experiment 0.94647520326312 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458502 nonsynonymous SNV 0.257 5 2 hm5C_associated_SNPs_26298 0 0 0 0 3 Cytosol 1 0.500231595573643 0.68130099773407 0.999536808852715 hm5C_site_26858 DeepMRMD:0.68130099773407;iRNA_m5C:0.999536808852715 26859 chr17 29554590 29554590 1 + T A LUAD 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGGGAACAAGCAACAAAGCTAATCCATAACTATCCAAAA < 41bp 1 0.123400347122193 1 0.0754722654819489 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554590 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_26299 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26859 DeepMRMD:1;iRNA_m5C:0.999536712157815 26860 chr12 53427591 53427591 1 + T C LUAD 53427592 + 53427572 53427612 41 AAGTTTCATTTAACTTAGGTCCCCCCCAAAGACCCAAACTG AAGTTTCATTTAACTTAGGCCCCCCCCAAAGACCCAAACTG < 41bp 1 0.0324027989849194 1 0.080089658498764 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53427592 chr12:53427591 synonymous SNV . 0 20 hm5C_associated_SNPs_26300 0 0 1 0 1 Cytosol 1 0.500231643932147 1 0.999536712135705 hm5C_site_26860 DeepMRMD:1;iRNA_m5C:0.999536712135705 26861 chr5 70818760 70818760 1 + C T LUAD 70818769 + 70818749 70818789 41 AAGAGCAATATCTCAATAAACTAACAAGGTAACATTTTATT AAGAGCAATATTTCAATAAACTAACAAGGTAACATTTTATT < 41bp 1 0.0839834388002133 1 0.0887843072414398 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BDP1 ENSG00000145734 CDS Human protein_coding chr5:70818769 chr5:70818760 nonsynonymous SNV 0.006 0 12 hm5C_associated_SNPs_26301 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_26861 DeepMRMD:1;iRNA_m5C:0.999536712157812 26862 chr3 47385291 47385291 1 + G T LUAD 47385299 + 47385279 47385319 41 CGCCTCTACGCTGTTGGGGGCTACGACGGACAGTCAAACCT CGCCTCTACGCTTTTGGGGGCTACGACGGACAGTCAAACCT < 41bp 1 0.212410983148545 1 0.361970245838165 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47385299 chr3:47385291 nonsynonymous SNV 0.892 4 13 hm5C_associated_SNPs_26302 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26862 DeepMRMD:1;iRNA_m5C:0.999536712157815 26863 chr6 52288786 52288786 1 + G T LUAD 52288769 + 52288749 52288789 41 AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCT AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACTGCT < 41bp 1 0.241576546617004 1 0.327680468559265 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288769 chr6:52288786 nonsynonymous SNV 0.995 4 38 hm5C_associated_SNPs_26303 0 0 1 0 2 Cytosol 1 0.500219099088842 1 0.999561801822315 hm5C_site_26863 DeepMRMD:1;iRNA_m5C:0.999561801822315 26864 chr18 61648985 61648985 1 + C T LUAD 61648969 + 61648949 61648989 41 TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATCAGGC TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATTAGGC < 41bp 1 0.158477327339797 1 0.133378893136978 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61648969 chr18:61648985 stopgain 0.772 0 37 hm5C_associated_SNPs_26305 0 0 0 0 1 nucleus 1 0.500231643950207 1 0.999536712099585 hm5C_site_26864 DeepMRMD:1;iRNA_m5C:0.999536712099585 26865 chrX 107834438 107834438 1 + C A LUAD 107834422 + 107834402 107834442 41 AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCATGCT < 41bp 1 0.588183323439754 1 0.857790410518646 experiment 0.823633353120491 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107834422 chrX:107834438 nonsynonymous SNV 0.844 2 37 hm5C_associated_SNPs_26306 0 0 1 0 1 Ribosome 1 0.500231745986337 0.284419178962708 0.999536508027326 hm5C_site_26865 DeepMRMD:0.284419178962708;iRNA_m5C:0.999536508027326 26866 chrX 148628315 148628315 1 + G T LUAD 148628325 + 148628305 148628345 41 ACTTTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT ACTTTGCAATTCCCCGAAGACTTAACTCCCGATGAGGTTGT < 41bp 1 0.364958012517624 1 0.100856930017471 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXorf40A ENSG00000197620 CDS Human protein_coding chrX:148628325 chrX:148628315 nonsynonymous SNV 0.067 2 11 hm5C_associated_SNPs_26308 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26866 DeepMRMD:1;iRNA_m5C:0.999536712157815 26867 chr16 2106212 2106212 1 + G C LUAD 2106203 + 2106183 2106223 41 GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAC GGTGCTCCCTGCAGGATGATCTGTCTGCTCTGCGTCCGGAC < 41bp 1 0.294455408891048 1 0.155894190073013 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2106203 chr16:2106212 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_26309 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644207157 1 0.999536711585685 hm5C_site_26867 DeepMRMD:1;iRNA_m5C:0.999536711585685 26868 chr11 44129683 44129683 1 + G C LUAD 44129673 + 44129653 44129693 41 AATGAACTGCTCATGGCCATCTCAGACAGTGACTACTACAC AATGAACTGCTCATGGCCATCTCAGACAGTCACTACTACAC < 41bp 1 0.600022917699763 1 0.383938997983932 experiment 0.799954164600474 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129673 chr11:44129683 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_26311 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164392102 1 0.999536712157961 hm5C_site_26868 DeepMRMD:1;iRNA_m5C:0.999536712157961 26869 chr1 76255022 76255022 1 + A T LUAD 76255012 + 76254992 76255032 41 CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTAGT CTAGTATCGGACATGATCCTCATCTTTTATTCACTCTTAGT < 41bp 1 0.193446105573816 1 0.0396080017089844 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255012 chr1:76255022 nonsynonymous SNV 0.997 4 31 hm5C_associated_SNPs_26312 0 0 1 1 1 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_26869 DeepMRMD:1;iRNA_m5C:0.999536712157818 26870 chr11 67052428 67052428 1 + G T LUAD 67052439 + 67052419 67052459 41 AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG AACCGCCTCTAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG < 41bp 1 0.651376201377979 1 0.891974687576294 experiment 0.697247597244041 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052439 chr11:67052428 stopgain 0.829 0 10 hm5C_associated_SNPs_26314 0 0 1 0 1 chromatin 1 0.50023164434463 0.216050624847412 0.999536711310739 hm5C_site_26870 DeepMRMD:0.216050624847412;iRNA_m5C:0.999536711310739 26871 chr7 101459331 101459331 1 + G C LUAD 101459315 + 101459295 101459335 41 CTCAATATGTCTCAAGATGGCGGCCAATGTGGGATCGATGT CTCAATATGTCTCAAGATGGCGGCCAATGTGGGATCCATGT < 41bp 1 0.118986008688794 1 0.255511224269867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101459315 chr7:101459331 synonymous SNV . 0 37 hm5C_associated_SNPs_26315 0 0 1 0 1 Exosome 1 0.500231646040583 1 0.999536707918833 hm5C_site_26871 DeepMRMD:1;iRNA_m5C:0.999536707918833 26872 chr1 874763 874763 1 + G A LUAD 874779 + 874759 874799 41 CAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA CAGCACCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA < 41bp 1 0.0755854360367671 1 0.062049001455307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874779 chr1:874763 nonsynonymous SNV 0.960 3 5 hm5C_associated_SNPs_26316 0 0 0 0 2 nucleus 1 0.500231643961131 1 0.999536712077738 hm5C_site_26872 DeepMRMD:1;iRNA_m5C:0.999536712077738 26873 chr4 6925430 6925430 1 + G T LUAD 6925415 + 6925395 6925435 41 CGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTGCGCGC CGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTTCGCGC < 41bp 1 0.0219637511231026 1 0.0201244056224823 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:6925415 chr4:6925430 nonsynonymous SNV 0.320 1 36 hm5C_associated_SNPs_26317 0 0 1 0 0 Cytosol 1 0.50023164482283 1 0.99953671035434 hm5C_site_26873 DeepMRMD:1;iRNA_m5C:0.99953671035434 26874 chr20 1905416 1905416 1 + C T LUAD 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGAGAACATTGGATCTAATGAACGGAACATCTATA < 41bp 1 0.139035193790671 1 0.036724865436554 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905416 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_26318 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26874 DeepMRMD:1;iRNA_m5C:0.999536712157815 26875 chr7 100485430 100485430 1 + G T LUAD 100485418 + 100485398 100485438 41 GTTTTTTAACAACTTCCTCACTGATGCTAAGCGCCCAGCTC GTTTTTTAACAACTTCCTCACTGATGCTAAGCTCCCAGCTC < 41bp 1 0.475664993219727 1 0.215980291366577 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100485418 chr7:100485430 nonsynonymous SNV 0.980 3 33 hm5C_associated_SNPs_26319 0 0 1 0 0 Nucleus 1 0.500231643765478 1 0.999536712469044 hm5C_site_26875 DeepMRMD:1;iRNA_m5C:0.999536712469044 26876 chr16 77775669 77775669 1 + C G LUAD 77775688 + 77775668 77775708 41 CCTGAAGACGGTGTCACTTACCAGATCAAGGGAATGACGGC CGTGAAGACGGTGTCACTTACCAGATCAAGGGAATGACGGC < 41bp 1 0.664101674111339 1 0.507306158542633 experiment 0.671796651777322 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77775688 chr16:77775669 nonsynonymous SNV 0.128 4 2 hm5C_associated_SNPs_26320 0 0 1 0 0 nucleoplasm 1 0.50023096374508 0.985387682914734 0.999538072509841 hm5C_site_26876 DeepMRMD:0.985387682914734;iRNA_m5C:0.999538072509841 26877 chr16 77775669 77775669 1 + C G LUAD 77775689 + 77775669 77775709 41 CTGAAGACGGTGTCACTTACCAGATCAAGGGAATGACGGCA GTGAAGACGGTGTCACTTACCAGATCAAGGGAATGACGGCA < 41bp 1 0.556299241216711 1 0.719906628131866 experiment 0.887401517566578 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77775689 chr16:77775669 nonsynonymous SNV 0.128 4 1 hm5C_associated_SNPs_26321 0 0 1 0 0 nucleoplasm 1 0.500232141510912 0.560186743736268 0.999535716978176 hm5C_site_26877 DeepMRMD:0.560186743736268;iRNA_m5C:0.999535716978176 26878 chr1 957721 957721 1 + C T LUAD 957712 + 957692 957732 41 AACCAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTGAA AACCAGGTGTCCACTGGGGACACCAGGATTTTCTTTGTGAA < 41bp 1 0.440964854670829 1 0.145607233047485 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957712 chr1:957721 synonymous SNV . 0 30 hm5C_associated_SNPs_26323 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_26878 DeepMRMD:1;iRNA_m5C:0.999536712157815 26879 chr1 957721 957721 1 + C T LUAD 957715 + 957695 957735 41 CAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTGAACCC CAGGTGTCCACTGGGGACACCAGGATTTTCTTTGTGAACCC < 41bp 1 0.677161270046841 1 0.53598165512085 experiment 0.645677459906318 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957715 chr1:957721 synonymous SNV . 0 27 hm5C_associated_SNPs_26324 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.9280366897583 0.999536712157815 hm5C_site_26879 DeepMRMD:0.9280366897583;iRNA_m5C:0.999536712157815 26880 chr1 957721 957721 1 + C T LUAD 957724 + 957704 957744 41 ACTGGGGACACCAGGATCTTCTTTGTGAACCCTGCACCCCC ACTGGGGACACCAGGATTTTCTTTGTGAACCCTGCACCCCC < 41bp 1 0.246942852463063 1 0.15663555264473 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957724 chr1:957721 synonymous SNV . 0 18 hm5C_associated_SNPs_26325 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_26880 DeepMRMD:1;iRNA_m5C:0.999536712157815 26881 chr18 641426 641426 1 + G A LUAD 641423 + 641403 641443 41 TGGCCAGATTCTCCAGATGACCCGGAAGCACTTGGAGGACA TGGCCAGATTCTCCAGATGACCCAGAAGCACTTGGAGGACA < 41bp 1 0.43740418416594 1 0.0471773147583008 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641423 chr18:641426 nonsynonymous SNV 0.637 0 24 hm5C_associated_SNPs_26326 0 0 0 0 1 cytosol 1 0.500231643921285 1 0.999536712157429 hm5C_site_26881 DeepMRMD:1;iRNA_m5C:0.999536712157429 26882 chr10 104157747 104157747 1 + G A LUAD 104157753 + 104157733 104157773 41 CATAGAATCTCCGGGGGCATCAAACCTGAAGATTTCTCGAA CATAGAATCTCCGGAGGCATCAAACCTGAAGATTTCTCGAA < 41bp 1 0.236784970757438 1 0.603858530521393 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104157753 chr10:104157747 nonsynonymous SNV 0.038 4 15 hm5C_associated_SNPs_26327 0 0 1 0 2 chromatin 1 0.500231644058538 0.792282938957214 0.999536711882925 hm5C_site_26882 DeepMRMD:0.792282938957214;iRNA_m5C:0.999536711882925 26883 chr17 78219001 78219001 1 + C A LUAD 78218997 + 78218977 78219017 41 GTCTTGCCTCCTCCCCAGGTCTCACCAACATGTTGGGCTCC GTCTTGCCTCCTCCCCAGGTCTCAACAACATGTTGGGCTCC < 41bp 1 0.464370780797982 1 0.755250453948975 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78218997 chr17:78219001 nonsynonymous SNV 0.961 4 25 hm5C_associated_SNPs_26328 0 0 0 0 2 chromatin 1 0.500231643920907 0.48949909210205 0.999536712158185 hm5C_site_26883 DeepMRMD:0.48949909210205;iRNA_m5C:0.999536712158185 26884 chr11 77921420 77921420 1 + G T LUAD 77921407 + 77921387 77921427 41 TCCCCCTGCTGCTCCGCCTGCCACTGGCTGGTGGCCGTGGC TCCCCCTGCTGCTCCGCCTGCCACTGGCTGGTGTCCGTGGC < 41bp 1 0.103527432476158 1 0.242247700691223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP35 ENSG00000118369 CDS Human protein_coding chr11:77921407 chr11:77921420 nonsynonymous SNV 0.866 2 34 hm5C_associated_SNPs_26329 0 0 0 0 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26884 DeepMRMD:1;iRNA_m5C:0.999536712157815 26885 chr11 67818087 67818087 1 + G A LUAD 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTAATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC < 41bp 1 0.036477477013701 1 0.526453614234924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818087 synonymous SNV . 0 4 hm5C_associated_SNPs_26330 0 0 1 0 1 Nucleus 1 0.500231643921093 0.947092771530152 0.999536712157815 hm5C_site_26885 DeepMRMD:0.947092771530152;iRNA_m5C:0.999536712157815 26886 chr11 67818087 67818087 1 + G A LUAD 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTAATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT < 41bp 1 0.142215045007049 1 0.509085178375244 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818087 synonymous SNV . 0 3 hm5C_associated_SNPs_26331 0 0 1 0 1 Nucleus 1 0.500231643948472 0.981829643249512 0.999536712103057 hm5C_site_26886 DeepMRMD:0.981829643249512;iRNA_m5C:0.999536712103057 26887 chr9 36633175 36633175 1 + T C LUAD 36633167 + 36633147 36633187 41 TGGATCATGCAAGATTACAACTATCCTGTTGAGTGGCAAAG TGGATCATGCAAGATTACAACTATCCTGCTGAGTGGCAAAG < 41bp 1 0.12349299019693 1 0.039573460817337 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MELK ENSG00000165304 CDS Human protein_coding chr9:36633167 chr9:36633175 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_26332 0 0 1 0 2 chromatin 1 0.500232479662193 1 0.999535040675613 hm5C_site_26887 DeepMRMD:1;iRNA_m5C:0.999535040675613 26888 chr4 183696202 183696202 1 + A C LUAD 183696207 + 183696187 183696227 41 CCGACGGTTGCCAAAAGAAACATGACTTTGCCTGGCGAGAA CCGACGGTTGCCAAACGAAACATGACTTTGCCTGGCGAGAA < 41bp 1 0.37799729680732 1 0.147852450609207 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183696207 chr4:183696202 synonymous SNV . 0 16 hm5C_associated_SNPs_26333 0 0 0 0 0 nucleus 1 0.500231643888414 1 0.999536712223172 hm5C_site_26888 DeepMRMD:1;iRNA_m5C:0.999536712223172 26889 chr5 82868259 82868259 1 + C A LUAD 82868273 + 82868253 82868293 41 CCCAACCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTG CCCAACAAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTG < 41bp 1 0.034282876218703 1 0.0305226445198059 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868273 chr5:82868259 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_26334 0 0 1 0 1 Ribosome 1 0.500207154380664 1 0.999585691238672 hm5C_site_26889 DeepMRMD:1;iRNA_m5C:0.999585691238672 26890 chr5 82868259 82868259 1 + C A LUAD 82868278 + 82868258 82868298 41 CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG CAAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG < 41bp 1 0.47969610502974 1 0.634069442749023 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868278 chr5:82868259 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_26335 0 0 1 0 1 Ribosome 1 0.500231643921084 0.731861114501954 0.999536712157831 hm5C_site_26890 DeepMRMD:0.731861114501954;iRNA_m5C:0.999536712157831 26891 chr19 41111393 41111393 1 + C T LUAD 41111411 + 41111391 41111431 41 GGCCCTTGGGAGGAGGCGGACGCTGAGGCGGTGGCGCGGGC GGTCCTTGGGAGGAGGCGGACGCTGAGGCGGTGGCGCGGGC < 41bp 1 0.64168613843597 1 0.56363320350647 experiment 0.71662772312806 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41111411 chr19:41111393 synonymous SNV . 0 3 hm5C_associated_SNPs_26336 0 0 1 0 1 Cytosol 1 0.500231640545759 0.87273359298706 0.999536718908481 hm5C_site_26891 DeepMRMD:0.87273359298706;iRNA_m5C:0.999536718908481 26892 chr7 2473357 2473357 1 + G T LUAD 2473368 + 2473348 2473388 41 GGACCGGCAGCTCCGCTTCCCCCCGAGCTACCGGAACAGGA GGACCGGCATCTCCGCTTCCCCCCGAGCTACCGGAACAGGA < 41bp 1 0.311693339546238 1 0.128779768943787 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2473368 chr7:2473357 nonsynonymous SNV 0.002 0 10 hm5C_associated_SNPs_26338 0 0 1 0 0 nucleolus 1 0.500231643921092 1 0.999536712157816 hm5C_site_26892 DeepMRMD:1;iRNA_m5C:0.999536712157816 26893 chr12 54379688 54379688 1 + G T LUAD 54379670 + 54379650 54379690 41 AAGTCCGACAGCCAGACCCCCAGCCCCAATGAAATCAAGAC AAGTCCGACAGCCAGACCCCCAGCCCCAATGAAATCAATAC < 41bp 1 0.233894617578863 1 0.334073394536972 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HOXC10 ENSG00000180818;ENSG00000273049 CDS Human other chr12:54379670 chr12:54379688 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_26339 0 0 0 0 0 exosome 1 0.500231643905129 1 0.999536712189742 hm5C_site_26893 DeepMRMD:1;iRNA_m5C:0.999536712189742 26894 chr12 52695778 52695778 1 + C A LUAD 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA GCCCGGCCGCTGCTGAATCACCGCCGCCCCCTACCGTGGCA < 41bp 1 0.472910048604214 1 0.217213302850723 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695778 stopgain 0.982 0 16 hm5C_associated_SNPs_26340 0 0 0 0 1 nucleus 1 0.500231643954637 1 0.999536712090725 hm5C_site_26894 DeepMRMD:1;iRNA_m5C:0.999536712090725 26895 chr2 74687010 74687010 1 + G C LUAD 74687004 + 74686984 74687024 41 TCCTTGCCTCTTGCAGGGTTCTGGCTGCTCTGGACTGTCCT TCCTTGCCTCTTGCAGGGTTCTGGCTCCTCTGGACTGTCCT < 41bp 1 0.302276689937779 1 0.229456186294556 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WBP1 ENSG00000239779 CDS Human protein_coding chr2:74687004 chr2:74687010 synonymous SNV . 0 27 hm5C_associated_SNPs_26341 0 0 0 0 0 cytosol 1 0.500231643921074 1 0.999536712157852 hm5C_site_26895 DeepMRMD:1;iRNA_m5C:0.999536712157852 26896 chrX 48457261 48457261 1 + C A LUAD 48457272 + 48457252 48457292 41 CCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTG CCAGCGCTAAGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTG < 41bp 1 0.624391422269596 1 0.848430335521698 experiment 0.751217155460808 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457272 chrX:48457261 stopgain 1.000 1 10 hm5C_associated_SNPs_26343 0 0 1 0 1 Ribosome 1 0.500231643921092 0.303139328956604 0.999536712157815 hm5C_site_26896 DeepMRMD:0.303139328956604;iRNA_m5C:0.999536712157815 26897 chrX 48457261 48457261 1 + C A LUAD 48457273 + 48457253 48457293 41 CAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTGC CAGCGCTAAGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTGC < 41bp 1 0.629886698895888 1 0.341738969087601 experiment 0.740226602208223 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457273 chrX:48457261 stopgain 1.000 1 9 hm5C_associated_SNPs_26344 0 0 1 0 1 Ribosome 1 0.500231643921099 1 0.999536712157802 hm5C_site_26897 DeepMRMD:1;iRNA_m5C:0.999536712157802 26898 chr17 21319335 21319335 1 + T C LUAD 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCACGTGCGCGCGCAGCTCATCAAGCCGCGGG < 41bp 1 0.65292806220908 1 0.406135022640228 experiment 0.694143875581841 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319335 synonymous SNV . 0 13 hm5C_associated_SNPs_26345 0 0 0 0 0 unknown 1 0.500231643921097 1 0.999536712157806 hm5C_site_26898 DeepMRMD:1;iRNA_m5C:0.999536712157806 26899 chr7 2472403 2472403 1 + G A LUAD 2472416 + 2472396 2472436 41 CTAGGCCGCACACGGGGCCGCCGCTGCCCACGCCCGGGCCG CTAGGCCACACACGGGGCCGCCGCTGCCCACGCCCGGGCCG < 41bp 1 0.482612533430477 1 0.154192358255386 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472416 chr7:2472403 synonymous SNV . 0 8 hm5C_associated_SNPs_26346 0 0 1 0 0 nucleolus 1 0.500231643921087 1 0.999536712157826 hm5C_site_26899 DeepMRMD:1;iRNA_m5C:0.999536712157826 26900 chr17 74078063 74078063 1 + C A LUAD 74078053 - 74078033 74078073 41 GGCTGGGGCCGCTCTTGGCCCCAAGGTTGCCCCGGGCCAGC GGCTGGGGCCTCTCTTGGCCCCAAGGTTGCCCCGGGCCAGC < 41bp 1 0.44628480957035 1 0.13056468963623 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZACN ENSG00000186919 CDS Human protein_coding chr17:74078053 chr17:74078063 nonsynonymous SNV 0.006 2 11 hm5C_associated_SNPs_26347 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_26900 DeepMRMD:1;iRNA_m5C:0.999536712157815 26901 chr17 74078063 74078063 1 + C A LUAD 74078054 - 74078034 74078074 41 GGGCTGGGGCCGCTCTTGGCCCCAAGGTTGCCCCGGGCCAG GGGCTGGGGCCTCTCTTGGCCCCAAGGTTGCCCCGGGCCAG < 41bp 1 0.621586926934432 1 0.144018858671188 experiment 0.756826146131137 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZACN ENSG00000186919 CDS Human protein_coding chr17:74078054 chr17:74078063 nonsynonymous SNV 0.006 2 12 hm5C_associated_SNPs_26348 0 0 1 0 0 chromatin 1 0.500231644761301 1 0.999536710477398 hm5C_site_26901 DeepMRMD:1;iRNA_m5C:0.999536710477398 26902 chr17 74078063 74078063 1 + C A LUAD 74078055 - 74078035 74078075 41 TGGGCTGGGGCCGCTCTTGGCCCCAAGGTTGCCCCGGGCCA TGGGCTGGGGCCTCTCTTGGCCCCAAGGTTGCCCCGGGCCA < 41bp 1 0.683736304754051 1 0.177568554878235 experiment 0.632527390491897 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZACN ENSG00000186919 CDS Human protein_coding chr17:74078055 chr17:74078063 nonsynonymous SNV 0.006 2 13 hm5C_associated_SNPs_26349 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_26902 DeepMRMD:1;iRNA_m5C:0.999536712157815 26903 chr17 74078063 74078063 1 + C A LUAD 74078064 - 74078044 74078084 41 TCTCGGGGCTGGGCTGGGGCCGCTCTTGGCCCCAAGGTTGC TCTCGGGGCTGGGCTGGGGCCTCTCTTGGCCCCAAGGTTGC < 41bp 1 0.506562586153756 1 0.144250422716141 experiment 0.986874827692489 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZACN ENSG00000186919 CDS Human protein_coding chr17:74078064 chr17:74078063 nonsynonymous SNV 0.006 2 22 hm5C_associated_SNPs_26350 0 0 1 0 0 chromatin 1 0.500231643922386 1 0.999536712155227 hm5C_site_26903 DeepMRMD:1;iRNA_m5C:0.999536712155227 26904 chr17 74078063 74078063 1 + C A LUAD 74078065 - 74078045 74078085 41 CTCTCGGGGCTGGGCTGGGGCCGCTCTTGGCCCCAAGGTTG CTCTCGGGGCTGGGCTGGGGCCTCTCTTGGCCCCAAGGTTG < 41bp 1 0.264122624343438 1 0.104539811611176 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZACN ENSG00000186919 CDS Human protein_coding chr17:74078065 chr17:74078063 nonsynonymous SNV 0.006 2 23 hm5C_associated_SNPs_26351 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_26904 DeepMRMD:1;iRNA_m5C:0.999536712157815 26905 chr5 34929952 34929952 1 + G C LUAD 34929960 + 34929940 34929980 41 GAGGCGCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCT GAGGCGCTGGGGCTGCGGCGCGACGCCAGCGAGGAGGAGCT < 41bp 1 0.671508427213467 1 0.30105048418045 experiment 0.656983145573066 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34929960 chr5:34929952 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_26353 0 0 1 0 1 Cytosol 1 0.50023164392341 1 0.99953671215318 hm5C_site_26905 DeepMRMD:1;iRNA_m5C:0.99953671215318 26906 chr5 34929952 34929952 1 + G C LUAD 34929965 + 34929945 34929985 41 GCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCTCAAGA GCTGGGGCTGCGGCGCGACGCCAGCGAGGAGGAGCTCAAGA < 41bp 1 0.613792571142353 1 0.554490208625793 experiment 0.772414857715295 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34929965 chr5:34929952 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_26354 0 0 1 0 1 Cytosol 1 0.500231535261938 0.891019582748414 0.999536929476123 hm5C_site_26906 DeepMRMD:0.891019582748414;iRNA_m5C:0.999536929476123 26907 chr15 90771572 90771572 1 + C G LUAD 90771587 + 90771567 90771607 41 TTGCTCTACCGGCACCGGAACAGCATGAAAGTCTTCCTGAA TTGCTGTACCGGCACCGGAACAGCATGAAAGTCTTCCTGAA < 41bp 1 0.666539697463079 1 0.607730150222778 experiment 0.666920605073842 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90771587 chr15:90771572 synonymous SNV . 0 6 hm5C_associated_SNPs_26355 0 0 1 0 0 chromatin 1 0.500231643921092 0.784539699554444 0.999536712157815 hm5C_site_26907 DeepMRMD:0.784539699554444;iRNA_m5C:0.999536712157815 26908 chr1 145507688 145507688 1 + C T LUAD 145507671 + 145507651 145507691 41 CTCGATCGAAGGCGAGATGGCGGACGTGCTAGATCTTCACG CTCGATCGAAGGCGAGATGGCGGACGTGCTAGATCTTTACG < 41bp 1 0.247479538601207 1 0.250316202640533 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RBM8A ENSG00000131795 CDS Human other chr1:145507671 chr1:145507688 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_26356 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_26908 DeepMRMD:1;iRNA_m5C:0.999536712157814 26909 chr7 114655761 114655761 1 + C T LUAD 114655752 + 114655732 114655772 41 GAAAATGAAGATTGTTGTGTCCACTGTATCCTGGCTTGCTT GAAAATGAAGATTGTTGTGTCCACTGTATTCTGGCTTGCTT < 41bp 1 0.16038528745748 1 0.0884399712085724 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655752 chr7:114655761 synonymous SNV . 0 30 hm5C_associated_SNPs_26357 0 0 1 0 1 Cytosol 1 0.500238605344268 1 0.999522789311464 hm5C_site_26909 DeepMRMD:1;iRNA_m5C:0.999522789311464 26910 chr9 37424918 37424918 1 + G T LUAD 37424932 + 37424912 37424952 41 GCCCACGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAA GCCCACTGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAA < 41bp 1 0.155403900971361 1 0.0620381534099579 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424932 chr9:37424918 nonsynonymous SNV 0.875 5 7 hm5C_associated_SNPs_26359 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_26910 DeepMRMD:1;iRNA_m5C:0.999536712157815 26911 chr9 37424918 37424918 1 + G T LUAD 37424937 + 37424917 37424957 41 CGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGA CTGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGA < 41bp 1 0.191337962522643 1 0.681494295597076 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424937 chr9:37424918 nonsynonymous SNV 0.875 5 2 hm5C_associated_SNPs_26360 0 0 1 0 2 Ribosome 1 0.500231662033146 0.637011408805848 0.999536675933708 hm5C_site_26911 DeepMRMD:0.637011408805848;iRNA_m5C:0.999536675933708 26912 chr9 37424918 37424918 1 + G T LUAD 37424938 + 37424918 37424958 41 GGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGAT TGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGAT < 41bp 1 0.264671511728635 1 0.48793625831604 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424938 chr9:37424918 nonsynonymous SNV 0.875 5 1 hm5C_associated_SNPs_26361 0 0 1 0 2 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_26912 DeepMRMD:1;iRNA_m5C:0.99953671215782 26913 chr3 142840050 142840050 1 + C G LUAD 142840040 + 142840020 142840060 41 ACCTCCGCACTCCTTACCGCCCTCCCGCTGCCGCCGTCGGG ACCTCCGCACTCCTTACCGCCCTCCCGCTGGCGCCGTCGGG < 41bp 1 0.0311806640721332 1 0.0426264107227325 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840040 chr3:142840050 nonsynonymous SNV 0.010 1 31 hm5C_associated_SNPs_26362 0 0 1 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26913 DeepMRMD:1;iRNA_m5C:0.999536712157815 26914 chr12 65564184 65564184 1 + G A LUAD 65564171 + 65564151 65564191 41 TCGGACTCAGAGGAAGAGGACGACGACGACGTGGCCTCCAG TCGGACTCAGAGGAAGAGGACGACGACGACGTGACCTCCAG < 41bp 1 0.641116032810361 1 0.46448826789856 experiment 0.717767934379278 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65564171 chr12:65564184 nonsynonymous SNV 0.445 1 34 hm5C_associated_SNPs_26363 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644021005 1 0.999536711957991 hm5C_site_26914 DeepMRMD:1;iRNA_m5C:0.999536711957991 26915 chr5 82834300 82834300 1 + T C LUAD 82834308 + 82834288 82834328 41 CACTCTCCCACGTAGTCCTGCCTCTGTCTTTATGGAGCAGG CACTCTCCCACGCAGTCCTGCCTCTGTCTTTATGGAGCAGG < 41bp 1 0.0196106813962208 1 0.0387365520000458 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82834308 chr5:82834300 synonymous SNV . 0 13 hm5C_associated_SNPs_26364 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157819 hm5C_site_26915 DeepMRMD:1;iRNA_m5C:0.999536712157819 26916 chr11 67049199 67049199 1 + G C LUAD 67049189 + 67049169 67049209 41 AAGCTCAGCTTCATCCTGGACCTCATGAACGGTGAGTGCTG AAGCTCAGCTTCATCCTGGACCTCATGAACCGTGAGTGCTG < 41bp 1 0.163054723265475 1 0.0128652155399323 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67049189 chr11:67049199 nonsynonymous SNV 0.973 3 31 hm5C_associated_SNPs_26365 0 0 1 0 2 chromatin 1 0.500231645892609 1 0.999536708214781 hm5C_site_26916 DeepMRMD:1;iRNA_m5C:0.999536708214781 26917 chr16 2122317 2122317 1 + A T LUAD 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATCTTTTCTTCCCCTTGCAGTGTGGACCAGC < 41bp 1 0.119428305258882 1 0.034792572259903 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122317 nonsynonymous SNV 0.737 4 17 hm5C_associated_SNPs_26366 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_26917 DeepMRMD:1;iRNA_m5C:0.999536712157816 26918 chr1 100757055 100757055 1 + C T LUAD 100757044 + 100757024 100757064 41 ATGCCAAGGAATTGGGATGACAAATCCAAATCTATAGAGTA ATGCCAAGGAATTGGGATGACAAATCCAAATTTATAGAGTA < 41bp 1 0.314991562304775 1 0.474586337804794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100757044 chr1:100757055 synonymous SNV . 0 32 hm5C_associated_SNPs_26367 0 0 1 0 1 Ribosome 1 0.500231643925669 1 0.999536712148662 hm5C_site_26918 DeepMRMD:1;iRNA_m5C:0.999536712148662 26919 chr12 27835625 27835625 1 + T G LUAD 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATGGTCGAATGCTACATGACATGACTGTTGTAAGT < 41bp 1 0.543283111862944 1 0.43330854177475 experiment 0.913433776274111 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835625 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_26368 0 0 0 0 2 Nucleus 1 0.500231628879946 1 0.999536742240108 hm5C_site_26919 DeepMRMD:1;iRNA_m5C:0.999536742240108 26920 chr9 135947049 135947049 1 + C A LUAD 135947032 + 135947012 135947052 41 ACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGG ACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCAGGG < 41bp 1 0.30508034614777 1 0.363571792840958 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947032 chr9:135947049 synonymous SNV . 0 38 hm5C_associated_SNPs_26369 0 0 1 0 0 exosome 1 0.500232358347133 1 0.999535283305733 hm5C_site_26920 DeepMRMD:1;iRNA_m5C:0.999535283305733 26921 chr9 135947049 135947049 1 + C A LUAD 135947033 + 135947013 135947053 41 CTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGG CTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCAGGGG < 41bp 1 0.467386096631813 1 0.416590690612793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947033 chr9:135947049 synonymous SNV . 0 37 hm5C_associated_SNPs_26370 0 0 1 0 0 exosome 1 0.500231643921364 1 0.999536712157271 hm5C_site_26921 DeepMRMD:1;iRNA_m5C:0.999536712157271 26922 chr9 135947049 135947049 1 + C A LUAD 135947035 + 135947015 135947055 41 CCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC CCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCAGGGGCC < 41bp 1 0.228946205746936 1 0.146002024412155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947035 chr9:135947049 synonymous SNV . 0 35 hm5C_associated_SNPs_26371 0 0 1 0 0 exosome 1 0.500231643939227 1 0.999536712121546 hm5C_site_26922 DeepMRMD:1;iRNA_m5C:0.999536712121546 26923 chr9 135947049 135947049 1 + C A LUAD 135947036 + 135947016 135947056 41 CGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC CGAGACCGCCCCCGTGCCGCCCACGGGTGACTCAGGGGCCC < 41bp 1 0.46964472235815 1 0.20607802271843 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947036 chr9:135947049 synonymous SNV . 0 34 hm5C_associated_SNPs_26372 0 0 1 0 0 exosome 1 0.500231602592184 1 0.999536794815632 hm5C_site_26923 DeepMRMD:1;iRNA_m5C:0.999536794815632 26924 chr9 135947049 135947049 1 + C A LUAD 135947046 + 135947026 135947066 41 CCCGTGCCGCCCACGGGTGACTCCGGGGCCCCCCCTGTGCC CCCGTGCCGCCCACGGGTGACTCAGGGGCCCCCCCTGTGCC < 41bp 1 0.662598014069949 1 0.609946072101593 experiment 0.674803971860102 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947046 chr9:135947049 synonymous SNV . 0 24 hm5C_associated_SNPs_26373 0 0 1 0 0 exosome 1 0.500231643920639 0.780107855796814 0.999536712158722 hm5C_site_26924 DeepMRMD:0.780107855796814;iRNA_m5C:0.999536712158722 26925 chr11 4142904 4142904 1 + A C LUAD 4142908 + 4142888 4142928 41 TTCCTTGATTTAAAGAAGAACACAGGAAAGGAAGAGCAGCG TTCCTTGATTTAAAGACGAACACAGGAAAGGAAGAGCAGCG < 41bp 1 0.397189905481725 1 0.315557420253754 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142908 chr11:4142904 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_26374 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26925 DeepMRMD:1;iRNA_m5C:0.999536712157815 26926 chr11 4142904 4142904 1 + A C LUAD 4142924 + 4142904 4142944 41 AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTC CGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTC < 41bp 1 0.59015100169609 1 0.506074249744415 experiment 0.819697996607821 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142924 chr11:4142904 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_26375 0 0 1 0 1 Nucleus 1 0.500231643921092 0.98785150051117 0.999536712157816 hm5C_site_26926 DeepMRMD:0.98785150051117;iRNA_m5C:0.999536712157816 26927 chr12 109539761 109539761 1 + G C LUAD 109539764 + 109539744 109539784 41 GACCTAATCAAGCTCACGGGCTCTGCTTTAGTGTTCAAAGG GACCTAATCAAGCTCACCGGCTCTGCTTTAGTGTTCAAAGG < 41bp 1 0.303863763455736 1 0.385829716920853 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109539764 chr12:109539761 nonsynonymous SNV 0.935 5 18 hm5C_associated_SNPs_26376 0 0 1 0 2 Ribosome 1 0.500231643913998 1 0.999536712172005 hm5C_site_26927 DeepMRMD:1;iRNA_m5C:0.999536712172005 26928 chr5 14487912 14487912 1 + G T LUAD 14487919 + 14487899 14487939 41 AGCGCGCCCAGCAGGCGGCCCCCCGGCGCGGACGCCGAGGG AGCGCGCCCAGCATGCGGCCCCCCGGCGCGGACGCCGAGGG < 41bp 1 0.186379840547538 1 0.114134877920151 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14487919 chr5:14487912 nonsynonymous SNV 0.095 1 14 hm5C_associated_SNPs_26377 0 0 0 0 0 Nucleus 1 0.500231655286595 1 0.99953668942681 hm5C_site_26928 DeepMRMD:1;iRNA_m5C:0.99953668942681 26929 chr5 14487912 14487912 1 + G T LUAD 14487920 + 14487900 14487940 41 GCGCGCCCAGCAGGCGGCCCCCCGGCGCGGACGCCGAGGGG GCGCGCCCAGCATGCGGCCCCCCGGCGCGGACGCCGAGGGG < 41bp 1 0.479451481718339 1 0.470711141824722 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14487920 chr5:14487912 nonsynonymous SNV 0.095 1 13 hm5C_associated_SNPs_26378 0 0 0 0 0 Nucleus 1 0.500231643921419 1 0.999536712157162 hm5C_site_26929 DeepMRMD:1;iRNA_m5C:0.999536712157162 26930 chr5 14487912 14487912 1 + G T LUAD 14487921 + 14487901 14487941 41 CGCGCCCAGCAGGCGGCCCCCCGGCGCGGACGCCGAGGGGT CGCGCCCAGCATGCGGCCCCCCGGCGCGGACGCCGAGGGGT < 41bp 1 0.340334472396345 1 0.48651921749115 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14487921 chr5:14487912 nonsynonymous SNV 0.095 1 12 hm5C_associated_SNPs_26379 0 0 0 0 0 Nucleus 1 0.50023164994151 1 0.999536700116981 hm5C_site_26930 DeepMRMD:1;iRNA_m5C:0.999536700116981 26931 chr5 14487912 14487912 1 + G T LUAD 14487922 + 14487902 14487942 41 GCGCCCAGCAGGCGGCCCCCCGGCGCGGACGCCGAGGGGTC GCGCCCAGCATGCGGCCCCCCGGCGCGGACGCCGAGGGGTC < 41bp 1 0.574969389164519 1 0.513270795345306 experiment 0.850061221670962 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14487922 chr5:14487912 nonsynonymous SNV 0.095 1 11 hm5C_associated_SNPs_26380 0 0 0 0 0 Nucleus 1 0.500231644141955 0.973458409309388 0.99953671171609 hm5C_site_26931 DeepMRMD:0.973458409309388;iRNA_m5C:0.99953671171609 26932 chr5 14487912 14487912 1 + G T LUAD 14487925 + 14487905 14487945 41 CCCAGCAGGCGGCCCCCCGGCGCGGACGCCGAGGGGTCCGA CCCAGCATGCGGCCCCCCGGCGCGGACGCCGAGGGGTCCGA < 41bp 1 0.57707573725048 1 0.778798818588257 experiment 0.845848525499039 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14487925 chr5:14487912 nonsynonymous SNV 0.095 1 8 hm5C_associated_SNPs_26381 0 0 0 0 0 Nucleus 1 0.500231643921105 0.442402362823486 0.999536712157789 hm5C_site_26932 DeepMRMD:0.442402362823486;iRNA_m5C:0.999536712157789 26933 chr12 78520969 78520969 1 + C G LUAD 78520959 + 78520939 78520979 41 TTTAACAGCATGCAGCTTGACAGAAATACACTACCCAAAAA TTTAACAGCATGCAGCTTGACAGAAATACAGTACCCAAAAA < 41bp 1 0.392111900150689 1 0.236918300390244 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAV3 ENSG00000067798 CDS Human protein_coding chr12:78520959 chr12:78520969 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_26382 0 0 0 0 2 Nucleus 1 0.500231643739943 1 0.999536712520113 hm5C_site_26933 DeepMRMD:1;iRNA_m5C:0.999536712520113 26934 chr10 1054920 1054920 1 + A T LUAD 1054906 + 1054886 1054926 41 GGATCTTCTCAGGAGAGGCCCCCTTTCATCCCTGAAGGAGT GGATCTTCTCAGGAGAGGCCCCCTTTCATCCCTGTAGGAGT < 41bp 1 0.0512206347887779 1 0.0281098783016205 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1054906 chr10:1054920 nonsynonymous SNV 0.727 2 35 hm5C_associated_SNPs_26383 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26934 DeepMRMD:1;iRNA_m5C:0.999536712157815 26935 chr10 1054920 1054920 1 + A T LUAD 1054907 + 1054887 1054927 41 GATCTTCTCAGGAGAGGCCCCCTTTCATCCCTGAAGGAGTG GATCTTCTCAGGAGAGGCCCCCTTTCATCCCTGTAGGAGTG < 41bp 1 0.0257693646246066 1 0.18477138876915 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1054907 chr10:1054920 nonsynonymous SNV 0.727 2 34 hm5C_associated_SNPs_26384 0 0 1 0 1 Cytosol 1 0.500231643921197 1 0.999536712157606 hm5C_site_26935 DeepMRMD:1;iRNA_m5C:0.999536712157606 26936 chr17 48153048 48153048 1 + C T LUAD 48153033 + 48153013 48153053 41 CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGTTTCTT < 41bp 1 0.282985986050488 1 0.253248482942581 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153033 chr17:48153048 synonymous SNV . 0 36 hm5C_associated_SNPs_26385 0 0 0 0 2 Cytosol 1 0.500231617247581 1 0.999536765504838 hm5C_site_26936 DeepMRMD:1;iRNA_m5C:0.999536765504838 26937 chr7 142458434 142458434 1 + G A LUAD 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAA < 41bp 1 0.026247172394066 1 0.142227977514267 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458434 synonymous SNV . 0 41 hm5C_associated_SNPs_26386 0 0 0 0 1 Cytosol 1 0.500231643936165 1 0.999536712127671 hm5C_site_26937 DeepMRMD:1;iRNA_m5C:0.999536712127671 26938 chr7 142458434 142458434 1 + G A LUAD 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAAA < 41bp 1 0.00339906157005303 1 0.0920908749103546 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458434 synonymous SNV . 0 40 hm5C_associated_SNPs_26387 0 0 0 0 1 Cytosol 1 0.500231643504665 1 0.99953671299067 hm5C_site_26938 DeepMRMD:1;iRNA_m5C:0.99953671299067 26939 chr7 142458434 142458434 1 + G A LUAD 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAAAT < 41bp 1 0.0410699040363612 1 0.104257315397263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458434 synonymous SNV . 0 39 hm5C_associated_SNPs_26388 0 0 0 0 1 Cytosol 1 0.500231643921492 1 0.999536712157017 hm5C_site_26939 DeepMRMD:1;iRNA_m5C:0.999536712157017 26940 chr7 142458434 142458434 1 + G A LUAD 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATGACAAAATCGTTGGGGGCTACAA < 41bp 1 0.46500958649047 1 0.416912019252777 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458434 synonymous SNV . 0 24 hm5C_associated_SNPs_26389 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_26940 DeepMRMD:1;iRNA_m5C:0.999536712157815 26941 chr7 142458434 142458434 1 + G A LUAD 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAAATCGTTGGGGGCTACAACTGTGA < 41bp 1 0.284325720337575 1 0.14754244685173 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458434 synonymous SNV . 0 18 hm5C_associated_SNPs_26390 0 0 0 0 1 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_26941 DeepMRMD:1;iRNA_m5C:0.999536712157808 26942 chr7 142458434 142458434 1 + G A LUAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAAATCGTTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.289325038868502 1 0.473096042871475 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458434 synonymous SNV . 0 9 hm5C_associated_SNPs_26391 0 0 0 0 1 Cytosol 1 0.500231643921474 1 0.999536712157052 hm5C_site_26942 DeepMRMD:1;iRNA_m5C:0.999536712157052 26943 chr7 142458434 142458434 1 + G A LUAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAAATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.169440146808227 1 0.198673665523529 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458434 synonymous SNV . 0 6 hm5C_associated_SNPs_26392 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26943 DeepMRMD:1;iRNA_m5C:0.999536712157815 26944 chr7 142458434 142458434 1 + G A LUAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAAATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.422527468925072 1 0.359947383403778 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458434 synonymous SNV . 0 3 hm5C_associated_SNPs_26393 0 0 0 0 1 Cytosol 1 0.500231643922616 1 0.999536712154769 hm5C_site_26944 DeepMRMD:1;iRNA_m5C:0.999536712154769 26945 chr9 18504846 18504846 1 + C A LUAD 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTACGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG < 41bp 1 0.361412146176408 1 0.664055228233337 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504846 nonsynonymous SNV 0.934 3 5 hm5C_associated_SNPs_26394 0 0 0 0 0 Nucleus 1 0.500231643921092 0.671889543533326 0.999536712157815 hm5C_site_26945 DeepMRMD:0.671889543533326;iRNA_m5C:0.999536712157815 26946 chr12 121001251 121001251 1 + G A LUAD 121001234 + 121001214 121001254 41 CTTCTAGACCTCTTGCTCTCCCTCTGGTAGAAGAGGAGGAA CTTCTAGACCTCTTGCTCTCCCTCTGGTAGAAGAGGAAGAA < 41bp 1 0.061817712515023 1 0.363543510437012 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001234 chr12:121001251 synonymous SNV . 0 38 hm5C_associated_SNPs_26395 0 0 1 0 0 Ribosome 1 0.500231643920955 1 0.99953671215809 hm5C_site_26946 DeepMRMD:1;iRNA_m5C:0.99953671215809 26947 chr12 121001251 121001251 1 + G A LUAD 121001235 + 121001215 121001255 41 TTCTAGACCTCTTGCTCTCCCTCTGGTAGAAGAGGAGGAAG TTCTAGACCTCTTGCTCTCCCTCTGGTAGAAGAGGAAGAAG < 41bp 1 0.479057505093092 1 0.516868233680725 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001235 chr12:121001251 synonymous SNV . 0 37 hm5C_associated_SNPs_26396 0 0 1 0 0 Ribosome 1 0.500231643919922 0.96626353263855 0.999536712160155 hm5C_site_26947 DeepMRMD:0.96626353263855;iRNA_m5C:0.999536712160155 26948 chr1 22333450 22333450 1 + G A LUAD 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTG < 41bp 1 0.257279191590472 1 0.133709758520126 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333450 nonsynonymous SNV 0.440 4 38 hm5C_associated_SNPs_26398 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392109 1 0.99953671215782 hm5C_site_26948 DeepMRMD:1;iRNA_m5C:0.99953671215782 26949 chr1 22333450 22333450 1 + G A LUAD 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGA < 41bp 1 0.193349096455848 1 0.249917358160019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333450 nonsynonymous SNV 0.440 4 37 hm5C_associated_SNPs_26399 0 0 0 0 2 Endoplasmic reticulum 1 0.500231691267969 1 0.999536617464061 hm5C_site_26949 DeepMRMD:1;iRNA_m5C:0.999536617464061 26950 chr1 22333450 22333450 1 + G A LUAD 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACA < 41bp 1 0.10821291652794 1 0.251509249210358 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333450 nonsynonymous SNV 0.440 4 35 hm5C_associated_SNPs_26400 0 0 0 0 2 Endoplasmic reticulum 1 0.500231661407462 1 0.999536677185076 hm5C_site_26950 DeepMRMD:1;iRNA_m5C:0.999536677185076 26951 chr1 22333450 22333450 1 + G A LUAD 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATC < 41bp 1 0.330839554411043 1 0.111916720867157 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333450 nonsynonymous SNV 0.440 4 33 hm5C_associated_SNPs_26401 0 0 0 0 2 Endoplasmic reticulum 1 0.500231637126208 1 0.999536725747584 hm5C_site_26951 DeepMRMD:1;iRNA_m5C:0.999536725747584 26952 chr1 22333450 22333450 1 + G A LUAD 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCT < 41bp 1 0.116109626202546 1 0.0998891592025757 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333450 nonsynonymous SNV 0.440 4 31 hm5C_associated_SNPs_26402 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643913652 1 0.999536712172695 hm5C_site_26952 DeepMRMD:1;iRNA_m5C:0.999536712172695 26953 chr1 22333450 22333450 1 + G A LUAD 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTT < 41bp 1 0.0567875495838244 1 0.0474387407302856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333450 nonsynonymous SNV 0.440 4 30 hm5C_associated_SNPs_26403 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_26953 DeepMRMD:1;iRNA_m5C:0.999536712157815 26954 chr1 22333450 22333450 1 + G A LUAD 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTTC < 41bp 1 0.407580825610564 1 0.217504113912582 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333450 nonsynonymous SNV 0.440 4 29 hm5C_associated_SNPs_26404 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920422 1 0.999536712159155 hm5C_site_26954 DeepMRMD:1;iRNA_m5C:0.999536712159155 26955 chr1 22333450 22333450 1 + G A LUAD 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTTCCC < 41bp 1 0.33811829986443 1 0.502896666526794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333450 nonsynonymous SNV 0.440 4 27 hm5C_associated_SNPs_26405 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920817 0.994206666946412 0.999536712158366 hm5C_site_26955 DeepMRMD:0.994206666946412;iRNA_m5C:0.999536712158366 26956 chr1 22333450 22333450 1 + G A LUAD 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCGCCTCACTCCCTCCCGCTAGTGACATCCTTCCCA < 41bp 1 0.250771339637982 1 0.276189982891083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333450 nonsynonymous SNV 0.440 4 26 hm5C_associated_SNPs_26406 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920199 1 0.999536712159602 hm5C_site_26956 DeepMRMD:1;iRNA_m5C:0.999536712159602 26957 chr19 40704286 40704286 1 + G T LUAD 40704298 + 40704278 40704318 41 ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTCGC ACAGTCCTTATCCTGGAGGCCATCGAGAACCACAACCTCGC < 41bp 1 0.120401979497838 1 0.0595390498638153 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40704298 chr19:40704286 synonymous SNV . 0 9 hm5C_associated_SNPs_26409 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643985122 1 0.999536712029756 hm5C_site_26957 DeepMRMD:1;iRNA_m5C:0.999536712029756 26958 chr1 206653244 206653244 1 + A G LUAD 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGACGTCCCCAAGTTCGTCCCCAAGGTGGACCTGCAGGCGG < 41bp 1 0.305363579885795 1 0.317176580429077 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653244 synonymous SNV . 0 25 hm5C_associated_SNPs_26410 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_26958 DeepMRMD:1;iRNA_m5C:0.999536712157815 26959 chrX 73046712 73046712 1 + C A LUAD 73046709 - 73046689 73046729 41 GGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC GGACAGGACACATGGAATGCCTAAGAACTGAGACTTGTGAC < 41bp 1 0.355574762855813 1 0.303103536367416 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046709 chrX:73046712 . . 0 18 hm5C_associated_SNPs_26411 0 0 1 2 0 unknown 1 0.500230830487404 1 0.999538339025192 hm5C_site_26959 DeepMRMD:1;iRNA_m5C:0.999538339025192 26960 chrX 73046712 73046712 1 + C A LUAD 73046721 - 73046701 73046741 41 TCTTAAGACCTGGGACAGGACACATGGAAGGCCTAAGAACT TCTTAAGACCTGGGACAGGACACATGGAATGCCTAAGAACT < 41bp 1 0.202455826449751 1 0.0989247262477875 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046721 chrX:73046712 . . 0 30 hm5C_associated_SNPs_26412 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_26960 DeepMRMD:1;iRNA_m5C:0.999536712157815 26961 chrX 73046712 73046712 1 + C A LUAD 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGAAGTCTTAAGACCTGGGACAGGACACATGGAATGCCTAA < 41bp 1 0.598057891619468 1 0.503252685070038 experiment 0.803884216761063 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046712 . . 0 35 hm5C_associated_SNPs_26413 0 0 1 2 0 unknown 1 0.500231682414777 0.993494629859924 0.999536635170447 hm5C_site_26961 DeepMRMD:0.993494629859924;iRNA_m5C:0.999536635170447 26962 chr11 65270747 65270747 1 + T A LUAD 65270750 + 65270730 65270770 41 TTCTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCC TTCTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCC < 41bp 1 0.275293850082593 1 0.0458633601665497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270750 chr11:65270747 . . 0 18 hm5C_associated_SNPs_26414 0 0 1 8 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_26962 DeepMRMD:1;iRNA_m5C:0.999536712157815 26963 chr11 65270747 65270747 1 + T A LUAD 65270752 + 65270732 65270772 41 CTTAAATATCAACCATGGCACTTTCTCCTGACCCCTTCCCT CTTAAATATCAACCAAGGCACTTTCTCCTGACCCCTTCCCT < 41bp 1 0.0673897465303113 1 0.027358740568161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270752 chr11:65270747 . . 0 16 hm5C_associated_SNPs_26415 0 0 1 8 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_26963 DeepMRMD:1;iRNA_m5C:0.999536712157815 26964 chr9 106901507 106901507 1 + G T LUAD 106901519 + 106901499 106901539 41 CTACAGTAGCCAGATTTACTCAATGTCAAAATGGAAAGATT CTACAGTATCCAGATTTACTCAATGTCAAAATGGAAAGATT < 41bp 1 0.26288270738427 1 0.601303398609161 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106901519 chr9:106901507 nonsynonymous SNV 0.999 0 9 hm5C_associated_SNPs_26416 0 0 1 0 1 Cytosol 1 0.500231642572912 0.797393202781678 0.999536714854175 hm5C_site_26964 DeepMRMD:0.797393202781678;iRNA_m5C:0.999536714854175 26965 chr2 54872432 54872432 1 + C T LUAD 54872413 + 54872393 54872433 41 AAGAAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCT AAGAAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCTT < 41bp 1 0.309648101495749 1 0.110696315765381 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872413 chr2:54872432 synonymous SNV . 0 40 hm5C_associated_SNPs_26417 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26965 DeepMRMD:1;iRNA_m5C:0.999536712157815 26966 chr2 54872432 54872432 1 + C T LUAD 54872420 + 54872400 54872440 41 AGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCTGAGTCAG AGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCTTGAGTCAG < 41bp 1 0.302649513058218 1 0.357260823249817 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872420 chr2:54872432 synonymous SNV . 0 33 hm5C_associated_SNPs_26418 0 0 1 0 1 Nucleus 1 0.50023164289192 1 0.999536714216161 hm5C_site_26966 DeepMRMD:1;iRNA_m5C:0.999536714216161 26967 chr2 54872432 54872432 1 + C T LUAD 54872425 + 54872405 54872445 41 GAAGAGCTCCAAAGCCAAGCCCAGGCCCTGAGTCAGGAAGG GAAGAGCTCCAAAGCCAAGCCCAGGCCTTGAGTCAGGAAGG < 41bp 1 0.187848006031811 1 0.439471960067749 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872425 chr2:54872432 synonymous SNV . 0 28 hm5C_associated_SNPs_26419 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_26967 DeepMRMD:1;iRNA_m5C:0.999536712157815 26968 chr2 54872432 54872432 1 + C T LUAD 54872430 + 54872410 54872450 41 GCTCCAAAGCCAAGCCCAGGCCCTGAGTCAGGAAGGGAAGA GCTCCAAAGCCAAGCCCAGGCCTTGAGTCAGGAAGGGAAGA < 41bp 1 0.0306971342782898 1 0.0547321140766144 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872430 chr2:54872432 synonymous SNV . 0 23 hm5C_associated_SNPs_26420 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_26968 DeepMRMD:1;iRNA_m5C:0.999536712157814 26969 chr4 79399131 79399131 1 + G C LUAD 79399112 + 79399092 79399132 41 GAATTCACCCAGGCGAAGGTCATTATCAACGATACCGAGGA GAATTCACCCAGGCGAAGGTCATTATCAACGATACCGAGCA < 41bp 1 0.0792669213277492 1 0.0852461755275726 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79399112 chr4:79399131 nonsynonymous SNV 0.490 3 40 hm5C_associated_SNPs_26421 0 0 1 0 1 Nucleus 1 0.500251409906057 1 0.999497180187887 hm5C_site_26969 DeepMRMD:1;iRNA_m5C:0.999497180187887 26970 chr5 167850650 167850650 1 + A G LUAD 167850633 + 167850613 167850653 41 TGCATCCAGCCTGGACTCCTCCACTTCAGCCAGCTTCACTG TGCATCCAGCCTGGACTCCTCCACTTCAGCCAGCTTCGCTG < 41bp 1 0.127435684028771 1 0.101803123950958 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167850633 chr5:167850650 nonsynonymous SNV 0.994 2 38 hm5C_associated_SNPs_26422 0 0 0 0 0 Ribosome 1 0.500231643327868 1 0.999536713344264 hm5C_site_26970 DeepMRMD:1;iRNA_m5C:0.999536713344264 26971 chr7 142459757 142459757 1 + C T LUAD 142459739 + 142459719 142459759 41 TACGACAGGAAGACTCTGAACAATGACATCATGTTAATCAA TACGACAGGAAGACTCTGAACAATGACATCATGTTAATTAA < 41bp 1 0.473815596156137 1 0.232882857322693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459739 chr7:142459757 synonymous SNV . 0 39 hm5C_associated_SNPs_26423 0 0 0 0 0 Cytosol 1 0.500229415226858 1 0.999541169546285 hm5C_site_26971 DeepMRMD:1;iRNA_m5C:0.999541169546285 26972 chr7 142459757 142459757 1 + C T LUAD 142459745 + 142459725 142459765 41 AGGAAGACTCTGAACAATGACATCATGTTAATCAAGCTCTC AGGAAGACTCTGAACAATGACATCATGTTAATTAAGCTCTC < 41bp 1 0.581779859835872 1 0.117227286100388 experiment 0.836440280328256 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459745 chr7:142459757 synonymous SNV . 0 33 hm5C_associated_SNPs_26424 0 0 0 0 0 Cytosol 1 0.500231795048994 1 0.999536409902011 hm5C_site_26972 DeepMRMD:1;iRNA_m5C:0.999536409902011 26973 chr7 142459757 142459757 1 + C T LUAD 142459748 + 142459728 142459768 41 AAGACTCTGAACAATGACATCATGTTAATCAAGCTCTCCTC AAGACTCTGAACAATGACATCATGTTAATTAAGCTCTCCTC < 41bp 1 0.530549844442412 1 0.0858295857906342 experiment 0.938900311115176 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459748 chr7:142459757 synonymous SNV . 0 30 hm5C_associated_SNPs_26425 0 0 0 0 0 Cytosol 1 0.500231748624256 1 0.999536502751488 hm5C_site_26973 DeepMRMD:1;iRNA_m5C:0.999536502751488 26974 chr7 142459757 142459757 1 + C T LUAD 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATGACATCATGTTAATTAAGCTCTCCTCACGTGCAGTAATC < 41bp 1 0.178362757212684 1 0.116877347230911 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459757 synonymous SNV . 0 17 hm5C_associated_SNPs_26426 0 0 0 0 0 Cytosol 1 0.50023238402562 1 0.99953523194876 hm5C_site_26974 DeepMRMD:1;iRNA_m5C:0.99953523194876 26975 chr7 142459757 142459757 1 + C T LUAD 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA GACATCATGTTAATTAAGCTCTCCTCACGTGCAGTAATCAA < 41bp 1 0.424248591153479 1 0.342803180217743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459757 synonymous SNV . 0 15 hm5C_associated_SNPs_26427 0 0 0 0 0 Cytosol 1 0.500231644069119 1 0.999536711861761 hm5C_site_26975 DeepMRMD:1;iRNA_m5C:0.999536711861761 26976 chr7 142459757 142459757 1 + C T LUAD 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG CATCATGTTAATTAAGCTCTCCTCACGTGCAGTAATCAACG < 41bp 1 0.324817151976403 1 0.117610305547714 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459757 synonymous SNV . 0 13 hm5C_associated_SNPs_26428 0 0 0 0 0 Cytosol 1 0.500231644604644 1 0.999536710790711 hm5C_site_26976 DeepMRMD:1;iRNA_m5C:0.999536710790711 26977 chr7 142459757 142459757 1 + C T LUAD 142459766 + 142459746 142459786 41 ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC ATCATGTTAATTAAGCTCTCCTCACGTGCAGTAATCAACGC < 41bp 1 0.350818906224211 1 0.258151829242706 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459766 chr7:142459757 synonymous SNV . 0 12 hm5C_associated_SNPs_26429 0 0 0 0 0 Cytosol 1 0.500231614488363 1 0.999536771023275 hm5C_site_26977 DeepMRMD:1;iRNA_m5C:0.999536771023275 26978 chr7 142459757 142459757 1 + C T LUAD 142459770 + 142459750 142459790 41 TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC TGTTAATTAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC < 41bp 1 0.388374500984375 1 0.179347455501556 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459770 chr7:142459757 synonymous SNV . 0 8 hm5C_associated_SNPs_26431 0 0 0 0 0 Cytosol 1 0.500231643977464 1 0.999536712045072 hm5C_site_26978 DeepMRMD:1;iRNA_m5C:0.999536712045072 26979 chr7 142459757 142459757 1 + C T LUAD 142459774 + 142459754 142459794 41 AATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCGTGT AATTAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCGTGT < 41bp 1 0.686833049455266 1 0.0689264833927155 experiment 0.626333901089468 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459774 chr7:142459757 synonymous SNV . 0 4 hm5C_associated_SNPs_26432 0 0 0 0 0 Cytosol 1 0.500231643814936 1 0.999536712370128 hm5C_site_26979 DeepMRMD:1;iRNA_m5C:0.999536712370128 26980 chr7 44801096 44801096 1 + G T LUAD 44801091 + 44801071 44801111 41 CGGCTGACCTTCCCTGTGCGCGATGGGGTGGTCCTGGAGCC CGGCTGACCTTCCCTGTGCGCGATGTGGTGGTCCTGGAGCC < 41bp 1 0.334786014092226 1 0.489540100097656 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801091 chr7:44801096 nonsynonymous SNV 0.994 4 26 hm5C_associated_SNPs_26433 0 0 1 0 2 Cytosol 1 0.500228278798217 1 0.999543442403565 hm5C_site_26980 DeepMRMD:1;iRNA_m5C:0.999543442403565 26981 chr8 27288520 27288520 1 + G A LUAD 27288507 + 27288487 27288527 41 CCGGCTTCGCCAACATCGACCAGGAGACCTACCGCTGTGAA CCGGCTTCGCCAACATCGACCAGGAGACCTACCACTGTGAA < 41bp 1 0.695988580485059 1 0.964615345001221 experiment 0.608022839029881 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK2B ENSG00000120899 CDS Human protein_coding chr8:27288507 chr8:27288520 nonsynonymous SNV 0.994 3 34 hm5C_associated_SNPs_26434 0 0 1 0 1 chromatin 1 0.500229387187768 0.0707693099975579 0.999541225624465 hm5C_site_26981 DeepMRMD:0.0707693099975579;iRNA_m5C:0.999541225624465 26982 chrX 151869808 151869808 1 + G C LUAD 151869802 + 151869782 151869822 41 TTGCAGCTGGTCTTTGGCATCGAGCTGATGGAAGTGGACCC TTGCAGCTGGTCTTTGGCATCGAGCTCATGGAAGTGGACCC < 41bp 1 0.609202148360494 1 0.73699414730072 experiment 0.781595703279011 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAGEA6 ENSG00000197172 CDS Human protein_coding chrX:151869802 chrX:151869808 synonymous SNV . 0 27 hm5C_associated_SNPs_26435 0 0 1 0 0 Ribosome 1 0.500231643919863 0.52601170539856 0.999536712160275 hm5C_site_26982 DeepMRMD:0.52601170539856;iRNA_m5C:0.999536712160275 26983 chr16 1818265 1818265 1 + G A LUAD 1818253 + 1818233 1818273 41 CCCGTCCCGGGGGCATCATCCACGTGTATGGCGATGACAGC CCCGTCCCGGGGGCATCATCCACGTGTATGGCAATGACAGC < 41bp 1 0.51222784198018 1 0.746766686439514 experiment 0.97554431603964 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1818253 chr16:1818265 nonsynonymous SNV 0.070 4 33 hm5C_associated_SNPs_26436 0 0 1 0 1 chromatin 1 0.50023771647512 0.506466627120972 0.999524567049761 hm5C_site_26983 DeepMRMD:0.506466627120972;iRNA_m5C:0.999524567049761 26984 chr4 20568974 20568974 1 + G T LUAD 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTTACTTTTACCGATGCACCTGTCCATATGG < 41bp 1 0.0942549125546582 1 0.288368284702301 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568974 nonsynonymous SNV 0.983 3 13 hm5C_associated_SNPs_26437 0 0 1 0 2 Ribosome 1 0.500231643484436 1 0.999536713031128 hm5C_site_26984 DeepMRMD:1;iRNA_m5C:0.999536713031128 26985 chr4 20568974 20568974 1 + G T LUAD 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTTACTTTTACCGATGCACCTGTCCATATGGT < 41bp 1 0.110538360407393 1 0.432897984981537 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568974 nonsynonymous SNV 0.983 3 12 hm5C_associated_SNPs_26438 0 0 1 0 2 Ribosome 1 0.500232589155895 1 0.999534821688209 hm5C_site_26985 DeepMRMD:1;iRNA_m5C:0.999534821688209 26986 chr19 39899030 39899030 1 + C G LUAD 39899016 + 39898996 39899036 41 TCTCGCCCTCCAGCTCCCCACCACCACCTGGGGACCTTCCA TCTCGCCCTCCAGCTCCCCACCACCACCTGGGGAGCTTCCA < 41bp 1 0.106082373108361 1 0.087239146232605 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZFP36 ENSG00000128016 CDS Human protein_coding chr19:39899016 chr19:39899030 nonsynonymous SNV 0.999 0 35 hm5C_associated_SNPs_26440 0 0 1 0 0 nucleus 1 0.500231643920945 1 0.99953671215811 hm5C_site_26986 DeepMRMD:1;iRNA_m5C:0.99953671215811 26987 chr12 110765497 110765497 1 + G A LUAD 110765502 + 110765482 110765522 41 AACTAGATGAATTTGGGGAACAGCTTTCCAAAGTCATCTCC AACTAGATGAATTTGAGGAACAGCTTTCCAAAGTCATCTCC < 41bp 1 0.317391960456854 1 0.159823954105377 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110765502 chr12:110765497 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_26441 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_26987 DeepMRMD:1;iRNA_m5C:0.999536712157815 26988 chr1 23236973 23236973 1 + C A LUAD 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACCGAAACCACCGGCCCAAGTTC < 41bp 1 0.417740853191229 1 0.435520708560944 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236973 synonymous SNV . 0 23 hm5C_associated_SNPs_26442 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643880856 1 0.999536712238289 hm5C_site_26988 DeepMRMD:1;iRNA_m5C:0.999536712238289 26989 chr7 142459819 142459819 1 + C A LUAD 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCA < 41bp 1 0.433954602338823 1 0.147596567869186 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459819 nonsynonymous SNV 0.000 3 41 hm5C_associated_SNPs_26443 0 0 0 0 1 Cytosol 1 0.500231652918071 1 0.999536694163858 hm5C_site_26989 DeepMRMD:1;iRNA_m5C:0.999536694163858 26990 chr7 142459819 142459819 1 + C A LUAD 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCATCC < 41bp 1 0.428228946303071 1 0.210590451955795 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459819 nonsynonymous SNV 0.000 3 38 hm5C_associated_SNPs_26444 0 0 0 0 1 Cytosol 1 0.500231643920662 1 0.999536712158675 hm5C_site_26990 DeepMRMD:1;iRNA_m5C:0.999536712158675 26991 chr7 142459819 142459819 1 + C A LUAD 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCATCCAG < 41bp 1 0.6330678939634 1 0.300191462039948 experiment 0.733864212073201 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459819 nonsynonymous SNV 0.000 3 36 hm5C_associated_SNPs_26445 0 0 0 0 1 Cytosol 1 0.50023165371895 1 0.999536692562101 hm5C_site_26991 DeepMRMD:1;iRNA_m5C:0.999536692562101 26992 chr7 142459819 142459819 1 + C A LUAD 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCATCCAGCC < 41bp 1 0.56803183254723 1 0.601418972015381 experiment 0.863936334905539 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459819 nonsynonymous SNV 0.000 3 34 hm5C_associated_SNPs_26446 0 0 0 0 1 Cytosol 1 0.500231643933481 0.797162055969238 0.999536712133037 hm5C_site_26992 DeepMRMD:0.797162055969238;iRNA_m5C:0.999536712133037 26993 chr7 142459819 142459819 1 + C A LUAD 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCGTGTCCACCATCTCTCTGCCCACCGCCCATCCAGCCACT < 41bp 1 0.172783522916712 1 0.0335991084575653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459819 nonsynonymous SNV 0.000 3 31 hm5C_associated_SNPs_26447 0 0 0 0 1 Cytosol 1 0.500232074201911 1 0.999535851596179 hm5C_site_26993 DeepMRMD:1;iRNA_m5C:0.999535851596179 26994 chr7 142459819 142459819 1 + C A LUAD 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CGTGTCCACCATCTCTCTGCCCACCGCCCATCCAGCCACTG < 41bp 1 0.201773282961623 1 0.0401272475719452 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459819 nonsynonymous SNV 0.000 3 30 hm5C_associated_SNPs_26448 0 0 0 0 1 Cytosol 1 0.500231643805614 1 0.999536712388771 hm5C_site_26994 DeepMRMD:1;iRNA_m5C:0.999536712388771 26995 chr7 142459819 142459819 1 + C A LUAD 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG GTGTCCACCATCTCTCTGCCCACCGCCCATCCAGCCACTGG < 41bp 1 0.658714012721151 1 0.0246598422527313 experiment 0.682571974557698 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459819 nonsynonymous SNV 0.000 3 29 hm5C_associated_SNPs_26449 0 0 0 0 1 Cytosol 1 0.500231643926057 1 0.999536712147885 hm5C_site_26995 DeepMRMD:1;iRNA_m5C:0.999536712147885 26996 chr7 142459819 142459819 1 + C A LUAD 142459813 + 142459793 142459833 41 GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA GTCCACCATCTCTCTGCCCACCGCCCATCCAGCCACTGGCA < 41bp 1 0.317617556267906 1 0.0656626224517822 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459813 chr7:142459819 nonsynonymous SNV 0.000 3 27 hm5C_associated_SNPs_26450 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_26996 DeepMRMD:1;iRNA_m5C:0.999536712157815 26997 chr7 142459819 142459819 1 + C A LUAD 142459814 + 142459794 142459834 41 TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC TCCACCATCTCTCTGCCCACCGCCCATCCAGCCACTGGCAC < 41bp 1 0.552204976303111 1 0.066987007856369 experiment 0.895590047393779 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459814 chr7:142459819 nonsynonymous SNV 0.000 3 26 hm5C_associated_SNPs_26451 0 0 0 0 1 Cytosol 1 0.500231631553137 1 0.999536736893726 hm5C_site_26997 DeepMRMD:1;iRNA_m5C:0.999536736893726 26998 chr7 142459819 142459819 1 + C A LUAD 142459816 + 142459796 142459836 41 CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA CACCATCTCTCTGCCCACCGCCCATCCAGCCACTGGCACGA < 41bp 1 0.209746275407638 1 0.121298164129257 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459816 chr7:142459819 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_26452 0 0 0 0 1 Cytosol 1 0.500231676768324 1 0.999536646463353 hm5C_site_26998 DeepMRMD:1;iRNA_m5C:0.999536646463353 26999 chr7 142459819 142459819 1 + C A LUAD 142459817 + 142459797 142459837 41 ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA ACCATCTCTCTGCCCACCGCCCATCCAGCCACTGGCACGAA < 41bp 1 0.100707900853731 1 0.146905690431595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459817 chr7:142459819 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_26453 0 0 0 0 1 Cytosol 1 0.500231643920714 1 0.999536712158573 hm5C_site_26999 DeepMRMD:1;iRNA_m5C:0.999536712158573 27000 chr7 142459819 142459819 1 + C A LUAD 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CCATCTCTCTGCCCACCGCCCATCCAGCCACTGGCACGAAG < 41bp 1 0.266574300522098 1 0.142884105443954 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459819 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_26454 0 0 0 0 1 Cytosol 1 0.500231643888387 1 0.999536712223225 hm5C_site_27000 DeepMRMD:1;iRNA_m5C:0.999536712223225 27001 chr7 142459819 142459819 1 + C A LUAD 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTCTCTGCCCACCGCCCATCCAGCCACTGGCACGAAGTGC < 41bp 1 0.318100500928029 1 0.304918706417084 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459819 nonsynonymous SNV 0.000 3 19 hm5C_associated_SNPs_26455 0 0 0 0 1 Cytosol 1 0.500231643924104 1 0.999536712151792 hm5C_site_27001 DeepMRMD:1;iRNA_m5C:0.999536712151792 27002 chr7 142459819 142459819 1 + C A LUAD 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTCTCTGCCCACCGCCCATCCAGCCACTGGCACGAAGTGCC < 41bp 1 0.470397050781112 1 0.462392747402191 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459819 nonsynonymous SNV 0.000 3 18 hm5C_associated_SNPs_26456 0 0 0 0 1 Cytosol 1 0.500231643935892 1 0.999536712128216 hm5C_site_27002 DeepMRMD:1;iRNA_m5C:0.999536712128216 27003 chr7 142459819 142459819 1 + C A LUAD 142459825 + 142459805 142459845 41 TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCA TCTGCCCACCGCCCATCCAGCCACTGGCACGAAGTGCCTCA < 41bp 1 0.422623570446058 1 0.0610598027706146 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459825 chr7:142459819 nonsynonymous SNV 0.000 3 15 hm5C_associated_SNPs_26457 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27003 DeepMRMD:1;iRNA_m5C:0.999536712157815 27004 chr7 142459819 142459819 1 + C A LUAD 142459826 + 142459806 142459846 41 CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCAT CTGCCCACCGCCCATCCAGCCACTGGCACGAAGTGCCTCAT < 41bp 1 0.660240693383592 1 0.174250900745392 experiment 0.679518613232816 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459826 chr7:142459819 nonsynonymous SNV 0.000 3 14 hm5C_associated_SNPs_26458 0 0 0 0 1 Cytosol 1 0.500231555048912 1 0.999536889902176 hm5C_site_27004 DeepMRMD:1;iRNA_m5C:0.999536889902176 27005 chr7 142459819 142459819 1 + C A LUAD 142459828 + 142459808 142459848 41 GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCT GCCCACCGCCCATCCAGCCACTGGCACGAAGTGCCTCATCT < 41bp 1 0.670974730584427 1 0.240819066762924 experiment 0.658050538831145 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459828 chr7:142459819 nonsynonymous SNV 0.000 3 12 hm5C_associated_SNPs_26459 0 0 0 0 1 Cytosol 1 0.500236615833483 1 0.999526768333034 hm5C_site_27005 DeepMRMD:1;iRNA_m5C:0.999526768333034 27006 chr7 142459819 142459819 1 + C A LUAD 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCATCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT < 41bp 1 0.665463751450549 1 0.226446241140366 experiment 0.669072497098902 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459819 nonsynonymous SNV 0.000 3 6 hm5C_associated_SNPs_26460 0 0 0 0 1 Cytosol 1 0.500231643921161 1 0.999536712157677 hm5C_site_27006 DeepMRMD:1;iRNA_m5C:0.999536712157677 27007 chr6 4935982 4935982 1 + G T LUAD 4935980 + 4935960 4936000 41 CTTGTTATCCACAAAGTCCTCAGAGAATAACTCACTAAATC CTTGTTATCCACAAAGTCCTCATAGAATAACTCACTAAATC < 41bp 1 0.32188207446431 1 0.716600179672241 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4935980 chr6:4935982 stopgain 0.991 1 23 hm5C_associated_SNPs_26461 0 0 1 0 1 Cytoplasm 1 0.500231643922295 0.566799640655518 0.99953671215541 hm5C_site_27007 DeepMRMD:0.566799640655518;iRNA_m5C:0.99953671215541 27008 chr12 104378659 104378659 1 + C A LUAD 104378675 + 104378655 104378695 41 CGTTCAAGAGGTGCAATATACATTTGACCTACAGCTTGCCC CGTTAAAGAGGTGCAATATACATTTGACCTACAGCTTGCCC < 41bp 1 0.249351820316319 1 0.0368557870388031 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TDG ENSG00000139372 CDS Human protein_coding chr12:104378675 chr12:104378659 nonsynonymous SNV 0.652 1 5 hm5C_associated_SNPs_26462 0 0 1 0 1 Cytosol 1 0.500231643079796 1 0.999536713840408 hm5C_site_27008 DeepMRMD:1;iRNA_m5C:0.999536713840408 27009 chr16 30990966 30990966 1 + G C LUAD 30990965 + 30990945 30990985 41 ACAGAGACATCGGACGAGGCCGAGCGCCCTAGGCCCCTGCT ACAGAGACATCGGACGAGGCCCAGCGCCCTAGGCCCCTGCT < 41bp 1 0.106190182705342 1 0.4281986951828 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30990965 chr16:30990966 nonsynonymous SNV 0.012 3 22 hm5C_associated_SNPs_26463 0 0 1 0 0 Cytosol 1 0.500232158020659 1 0.999535683958682 hm5C_site_27009 DeepMRMD:1;iRNA_m5C:0.999535683958682 27010 chr2 71795372 71795372 1 + C T LUAD 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTT < 41bp 1 0.100155845244429 1 0.0680699646472931 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795372 nonsynonymous SNV 0.967 5 41 hm5C_associated_SNPs_26464 0 0 0 0 2 Nucleus 1 0.500231643921109 1 0.999536712157782 hm5C_site_27010 DeepMRMD:1;iRNA_m5C:0.999536712157782 27011 chr10 93695417 93695417 1 + A G LUAD 93695421 + 93695401 93695441 41 TTTGTTATTTCAGGCTAGATCGCCTTTTTATTTTACTGGAT TTTGTTATTTCAGGCTGGATCGCCTTTTTATTTTACTGGAT < 41bp 1 0.411376534137435 1 0.281265377998352 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93695421 chr10:93695417 synonymous SNV . 0 17 hm5C_associated_SNPs_26465 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27011 DeepMRMD:1;iRNA_m5C:0.999536712157815 27012 chr19 3525945 3525945 1 + C A LUAD 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCATCCACTCCAGAGCCGGAGCCAACTGGAG < 41bp 1 0.420587285634105 1 0.72218245267868 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525945 nonsynonymous SNV 0.689 4 17 hm5C_associated_SNPs_26466 0 0 1 0 2 Ribosome 1 0.500231643921092 0.55563509464264 0.999536712157815 hm5C_site_27012 DeepMRMD:0.55563509464264;iRNA_m5C:0.999536712157815 27013 chr18 2656197 2656197 1 + G T LUAD 2656205 + 2656185 2656225 41 GTCCGAGCTCGGGGACCGGCCTCTGCAGGTCGGGGAGCGCT GTCCGAGCTCGGTGACCGGCCTCTGCAGGTCGGGGAGCGCT < 41bp 1 0.427769926473259 1 0.49423936009407 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2656205 chr18:2656197 synonymous SNV . 0 13 hm5C_associated_SNPs_26467 0 0 1 0 1 Nucleus 1 0.500232129025121 1 0.999535741949757 hm5C_site_27013 DeepMRMD:1;iRNA_m5C:0.999535741949757 27014 chr2 233697651 233697651 1 + G T LUAD 233697652 + 233697632 233697672 41 GCTGCGGATGGAAGAGGAGGCAGCCAGACTCCGGCATGAGG GCTGCGGATGGAAGAGGAGTCAGCCAGACTCCGGCATGAGG < 41bp 1 0.400512182629614 1 0.330240845680237 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233697652 chr2:233697651 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_26468 0 0 1 0 1 Nucleus 1 0.500231643893831 1 0.999536712212339 hm5C_site_27014 DeepMRMD:1;iRNA_m5C:0.999536712212339 27015 chr2 233697651 233697651 1 + G T LUAD 233697656 + 233697636 233697676 41 CGGATGGAAGAGGAGGCAGCCAGACTCCGGCATGAGGAAGA CGGATGGAAGAGGAGTCAGCCAGACTCCGGCATGAGGAAGA < 41bp 1 0.310612765552803 1 0.2479068338871 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233697656 chr2:233697651 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_26469 0 0 1 0 1 Nucleus 1 0.500200312478307 1 0.999599375043386 hm5C_site_27015 DeepMRMD:1;iRNA_m5C:0.999599375043386 27016 chr6 150290487 150290487 1 + G T LUAD 150290478 + 150290458 150290498 41 AATTTTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT AATTTTTGATGTACTGGGAACAAATGCTGTATCCAACAAGT < 41bp 1 0.231255114860997 1 0.354892015457153 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290478 chr6:150290487 nonsynonymous SNV 0.009 2 30 hm5C_associated_SNPs_26472 0 0 0 0 1 Nucleus 1 0.500231618133152 1 0.999536763733696 hm5C_site_27016 DeepMRMD:1;iRNA_m5C:0.999536763733696 27017 chr4 76711338 76711338 1 + C G LUAD 76711339 + 76711319 76711359 41 CAGAAGTTATTCGAGGCTGCCAAGTAAACCAAGACTACTTT CAGAAGTTATTCGAGGCTGGCAAGTAAACCAAGACTACTTT < 41bp 1 0.398365334203002 1 0.371402442455292 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76711339 chr4:76711338 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_26473 0 0 1 0 2 Nucleus 1 0.50023164378562 1 0.99953671242876 hm5C_site_27017 DeepMRMD:1;iRNA_m5C:0.99953671242876 27018 chr1 228525997 228525997 1 + C G LUAD 228526010 + 228525990 228526030 41 GCTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCC GCTGTCAGCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCC < 41bp 1 0.0586015051273433 1 0.525192677974701 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526010 chr1:228525997 nonsynonymous SNV 0.379 1 8 hm5C_associated_SNPs_26474 0 0 0 0 2 Ribosome 1 0.500231643921092 0.949614644050598 0.999536712157815 hm5C_site_27018 DeepMRMD:0.949614644050598;iRNA_m5C:0.999536712157815 27019 chr1 228525997 228525997 1 + C G LUAD 228526011 + 228525991 228526031 41 CTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCC CTGTCAGCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCC < 41bp 1 0.0677706948731479 1 0.65358304977417 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526011 chr1:228525997 nonsynonymous SNV 0.379 1 7 hm5C_associated_SNPs_26475 0 0 0 0 2 Ribosome 1 0.500231583560305 0.69283390045166 0.999536832879389 hm5C_site_27019 DeepMRMD:0.69283390045166;iRNA_m5C:0.999536832879389 27020 chr11 71209481 71209481 1 + C T LUAD 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GCGTACCACGCTGAGAACTACAGCCCTGAGGACAACAGGTT < 41bp 1 0.162273782788571 1 0.163086414337158 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209481 synonymous SNV . 0 12 hm5C_associated_SNPs_26476 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_27020 DeepMRMD:1;iRNA_m5C:0.999536712157815 27021 chr7 142460755 142460755 1 + C A LUAD 142460735 + 142460715 142460755 41 CCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGC CCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGA < 41bp 1 0.413893786319859 1 0.162905842065811 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460735 chr7:142460755 nonsynonymous SNV 0.014 3 41 hm5C_associated_SNPs_26477 0 0 0 0 0 Cytosol 1 0.50023642028953 1 0.99952715942094 hm5C_site_27021 DeepMRMD:1;iRNA_m5C:0.99952715942094 27022 chr7 142460755 142460755 1 + C A LUAD 142460745 + 142460725 142460765 41 TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGT TCTGGTGGCCCTGTGGTCTGCAATGGACAGATCCAAGGAGT < 41bp 1 0.451584647333836 1 0.149093985557556 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460745 chr7:142460755 nonsynonymous SNV 0.014 3 31 hm5C_associated_SNPs_26478 0 0 0 0 0 Cytosol 1 0.500231643979249 1 0.999536712041501 hm5C_site_27022 DeepMRMD:1;iRNA_m5C:0.999536712041501 27023 chr7 142460755 142460755 1 + C A LUAD 142460757 + 142460737 142460777 41 GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG GTGGTCTGCAATGGACAGATCCAAGGAGTTGTCTCCTGGGG < 41bp 1 0.331065652168931 1 0.520974218845367 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460757 chr7:142460755 nonsynonymous SNV 0.014 3 19 hm5C_associated_SNPs_26479 0 0 0 0 0 Cytosol 1 0.50023164342995 0.958051562309266 0.999536713140099 hm5C_site_27023 DeepMRMD:0.958051562309266;iRNA_m5C:0.999536713140099 27024 chr7 142460755 142460755 1 + C A LUAD 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTCTGCAATGGACAGATCCAAGGAGTTGTCTCCTGGGGT < 41bp 1 0.568283581964881 1 0.325219094753265 experiment 0.863432836070239 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460755 nonsynonymous SNV 0.014 3 18 hm5C_associated_SNPs_26480 0 0 0 0 0 Cytosol 1 0.500231643909595 1 0.99953671218081 hm5C_site_27024 DeepMRMD:1;iRNA_m5C:0.99953671218081 27025 chr7 142460755 142460755 1 + C A LUAD 142460769 + 142460749 142460789 41 GGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC GGACAGATCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC < 41bp 1 0.673141076859711 1 0.778610348701477 experiment 0.653717846280578 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460769 chr7:142460755 nonsynonymous SNV 0.014 3 7 hm5C_associated_SNPs_26481 0 0 0 0 0 Cytosol 1 0.500231643921092 0.442779302597046 0.999536712157815 hm5C_site_27025 DeepMRMD:0.442779302597046;iRNA_m5C:0.999536712157815 27026 chr7 142460755 142460755 1 + C A LUAD 142460771 + 142460751 142460791 41 ACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC ACAGATCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC < 41bp 1 0.370565649797493 1 0.789541482925415 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460771 chr7:142460755 nonsynonymous SNV 0.014 3 5 hm5C_associated_SNPs_26482 0 0 0 0 0 Cytosol 1 0.500231643921091 0.42091703414917 0.999536712157818 hm5C_site_27026 DeepMRMD:0.42091703414917;iRNA_m5C:0.999536712157818 27027 chr3 33879712 33879712 1 + G C LUAD 33879698 + 33879678 33879718 41 TTCTCTTCCTAATTTTAGATCTGTTTGAGAAGATGGTTCCC TTCTCTTCCTAATTTTAGATCTGTTTGAGAAGATCGTTCCC < 41bp 1 0.129843089605041 1 0.0693377256393433 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33879698 chr3:33879712 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_26483 0 0 1 0 1 Nucleus 1 0.500231644049419 1 0.999536711901162 hm5C_site_27027 DeepMRMD:1;iRNA_m5C:0.999536711901162 27028 chr1 1559062 1559062 1 + A T LUAD 1559066 + 1559046 1559086 41 CACGACCTGCTGCTGTACGACAACGCCCAGATCGGTGCGCG CACGACCTGCTGCTGTTCGACAACGCCCAGATCGGTGCGCG < 41bp 1 0.427914698241005 1 0.772683262825012 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1559066 chr1:1559062 nonsynonymous SNV 0.964 4 17 hm5C_associated_SNPs_26484 0 0 0 0 1 Ribosome 1 0.500231594858279 0.454633474349976 0.999536810283442 hm5C_site_27028 DeepMRMD:0.454633474349976;iRNA_m5C:0.999536810283442 27029 chr2 109347872 109347872 1 + A G LUAD 109347873 + 109347853 109347893 41 ACTGATGGAAGAGCAAAATACTGGCTTGAAAGAGCAGCCAA ACTGATGGAAGAGCAAAATGCTGGCTTGAAAGAGCAGCCAA < 41bp 1 0.636910494561734 1 0.345612943172455 experiment 0.726179010876532 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347873 chr2:109347872 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_26485 0 0 1 0 1 Nucleus 1 0.500231645308115 1 0.99953670938377 hm5C_site_27029 DeepMRMD:1;iRNA_m5C:0.99953670938377 27030 chr2 109347872 109347872 1 + A G LUAD 109347887 + 109347867 109347907 41 AAAATACTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAA AAAATGCTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAA < 41bp 1 0.210582105898099 1 0.549694418907166 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347887 chr2:109347872 nonsynonymous SNV 0.997 3 6 hm5C_associated_SNPs_26486 0 0 1 0 1 Nucleus 1 0.500231643921092 0.900611162185668 0.999536712157815 hm5C_site_27030 DeepMRMD:0.900611162185668;iRNA_m5C:0.999536712157815 27031 chr2 109347872 109347872 1 + A G LUAD 109347890 + 109347870 109347910 41 ATACTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAAGTC ATGCTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAAGTC < 41bp 1 0.0842184629058168 1 0.234037607908249 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347890 chr2:109347872 nonsynonymous SNV 0.997 3 3 hm5C_associated_SNPs_26487 0 0 1 0 1 Nucleus 1 0.500231709178137 1 0.999536581643726 hm5C_site_27031 DeepMRMD:1;iRNA_m5C:0.999536581643726 27032 chrX 46433945 46433945 1 + C A LUAD 46433942 + 46433922 46433962 41 AATCTTACCACGGCCGCCCTCTTCCGCTGGCGGACTAACAA AATCTTACCACGGCCGCCCTCTTACGCTGGCGGACTAACAA < 41bp 1 0.202238239728361 1 0.232366502285004 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHST7 ENSG00000147119 CDS Human protein_coding chrX:46433942 chrX:46433945 nonsynonymous SNV 0.754 4 24 hm5C_associated_SNPs_26488 0 0 0 0 0 Endoplasmic reticulum 1 0.500231642286216 1 0.999536715427567 hm5C_site_27032 DeepMRMD:1;iRNA_m5C:0.999536715427567 27033 chr7 142459838 142459838 1 + G A LUAD 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAA < 41bp 1 0.128629153618836 1 0.225198984146118 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459838 synonymous SNV . 0 41 hm5C_associated_SNPs_26489 0 0 0 0 1 Cytosol 1 0.500231643918584 1 0.999536712162831 hm5C_site_27033 DeepMRMD:1;iRNA_m5C:0.999536712162831 27034 chr7 142459838 142459838 1 + G A LUAD 142459819 + 142459799 142459839 41 CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAAT < 41bp 1 0.69312298190093 1 0.937215507030487 experiment 0.61375403619814 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459819 chr7:142459838 synonymous SNV . 0 40 hm5C_associated_SNPs_26490 0 0 0 0 1 Cytosol 1 0.500231643921076 0.125568985939026 0.999536712157848 hm5C_site_27034 DeepMRMD:0.125568985939026;iRNA_m5C:0.999536712157848 27035 chr7 142459838 142459838 1 + G A LUAD 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAATGC < 41bp 1 0.287183475502149 1 0.473943024873734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459838 synonymous SNV . 0 38 hm5C_associated_SNPs_26491 0 0 0 0 1 Cytosol 1 0.500231644098456 1 0.999536711803088 hm5C_site_27035 DeepMRMD:1;iRNA_m5C:0.999536711803088 27036 chr7 142459838 142459838 1 + G A LUAD 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAATGCC < 41bp 1 0.379170046274515 1 0.437045395374298 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459838 synonymous SNV . 0 37 hm5C_associated_SNPs_26492 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27036 DeepMRMD:1;iRNA_m5C:0.999536712157815 27037 chr7 142459838 142459838 1 + G A LUAD 142459825 + 142459805 142459845 41 TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCA TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAATGCCTCA < 41bp 1 0.379122329480961 1 0.129204720258713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459825 chr7:142459838 synonymous SNV . 0 34 hm5C_associated_SNPs_26493 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27037 DeepMRMD:1;iRNA_m5C:0.999536712157815 27038 chr7 142459838 142459838 1 + G A LUAD 142459826 + 142459806 142459846 41 CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCAT CTGCCCACCGCCCCTCCAGCCACTGGCACGAAATGCCTCAT < 41bp 1 0.65116827214839 1 0.195469975471497 experiment 0.69766345570322 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459826 chr7:142459838 synonymous SNV . 0 33 hm5C_associated_SNPs_26494 0 0 0 0 1 Cytosol 1 0.500231644106327 1 0.999536711787347 hm5C_site_27038 DeepMRMD:1;iRNA_m5C:0.999536711787347 27039 chr7 142459838 142459838 1 + G A LUAD 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACGAAATGCCTCATCTCTGGCTGGGGCAA < 41bp 1 0.46310864546103 1 0.0528034865856171 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459838 synonymous SNV . 0 18 hm5C_associated_SNPs_26497 0 0 0 0 1 Cytosol 1 0.500231643615836 1 0.999536712768329 hm5C_site_27039 DeepMRMD:1;iRNA_m5C:0.999536712768329 27040 chr7 142459838 142459838 1 + G A LUAD 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAATGCCTCATCTCTGGCTGGGGCAAC < 41bp 1 0.511234286382635 1 0.0557262301445007 experiment 0.97753142723473 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459838 synonymous SNV . 0 17 hm5C_associated_SNPs_26498 0 0 0 0 1 Cytosol 1 0.500231643921054 1 0.999536712157892 hm5C_site_27040 DeepMRMD:1;iRNA_m5C:0.999536712157892 27041 chr7 142459838 142459838 1 + G A LUAD 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAATGCCTCATCTCTGGCTGGGGCAACAC < 41bp 1 0.497631284844835 1 0.0147027671337128 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459838 synonymous SNV . 0 15 hm5C_associated_SNPs_26499 0 0 0 0 1 Cytosol 1 0.500231643672906 1 0.999536712654189 hm5C_site_27041 DeepMRMD:1;iRNA_m5C:0.999536712654189 27042 chrX 123229240 123229240 1 + C T LUAD 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGATGAGAGAGAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.48715098528096 1 0.476609528064728 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229240 stopgain 0.996 1 11 hm5C_associated_SNPs_26501 0 0 1 0 2 Nucleus 1 0.500231643921096 1 0.999536712157808 hm5C_site_27042 DeepMRMD:1;iRNA_m5C:0.999536712157808 27043 chr17 43311087 43311087 1 + G C LUAD 43311084 + 43311064 43311104 41 CTCGAGTACCTGGCCTTTGCCCAGTGCTCTGTCACGTAAGC CTCGAGTACCTGGCCTTTGCCCACTGCTCTGTCACGTAAGC < 41bp 1 0.137364219480612 1 0.328509449958801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43311084 chr17:43311087 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_26504 0 0 1 0 2 chromatin 1 0.500231792970696 1 0.999536414058607 hm5C_site_27043 DeepMRMD:1;iRNA_m5C:0.999536414058607 27044 chr13 48941720 48941720 1 + C T LUAD 48941724 + 48941704 48941744 41 TCATGATAAAACTCTTCAGACTGATTCTATAGACAGGTATT TCATGATAAAACTCTTTAGACTGATTCTATAGACAGGTATT < 41bp 1 0.209498142984453 1 0.0518398582935333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48941724 chr13:48941720 stopgain 1.000 0 17 hm5C_associated_SNPs_26505 0 0 1 0 2 Nucleus 1 0.500231640521154 1 0.999536718957693 hm5C_site_27044 DeepMRMD:1;iRNA_m5C:0.999536718957693 27045 chr7 100732051 100732051 1 + C G LUAD 100732032 + 100732012 100732052 41 GCCCAGCCCAGCCCTGGGGCCGAATCTGGACGGCTCTGGCC GCCCAGCCCAGCCCTGGGGCCGAATCTGGACGGCTCTGGGC < 41bp 1 0.270796839818772 1 0.334219813346863 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100732032 chr7:100732051 synonymous SNV . 0 40 hm5C_associated_SNPs_26506 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27045 DeepMRMD:1;iRNA_m5C:0.999536712157815 27046 chr1 218520046 218520046 1 + G A LUAD 218520059 + 218520039 218520079 41 AAAAAATGCACTACTGTGTGCTGAGCGCTTTTCTGATCCTG AAAAAATACACTACTGTGTGCTGAGCGCTTTTCTGATCCTG < 41bp 1 0.149604838383354 1 0.0755462348461151 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFB2 ENSG00000092969 CDS Human protein_coding chr1:218520059 chr1:218520046 nonsynonymous SNV 0.996 4 8 hm5C_associated_SNPs_26507 0 0 1 0 0 Ribosome 1 0.500231644189437 1 0.999536711621125 hm5C_site_27046 DeepMRMD:1;iRNA_m5C:0.999536711621125 27047 chr21 45736381 45736381 1 + A T LUAD 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGGGGAGGGTCGCCCTCTGCCTTCGACCGGA < 41bp 1 0.45573141298118 1 0.291431844234467 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736381 nonsynonymous SNV 0.454 1 20 hm5C_associated_SNPs_26508 0 0 1 0 2 Ribosome 1 0.500231665272864 1 0.999536669454272 hm5C_site_27047 DeepMRMD:1;iRNA_m5C:0.999536669454272 27048 chr21 45736381 45736381 1 + A T LUAD 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGGGGAGGGTCGCCCTCTGCCTTCGACCGGATC < 41bp 1 0.0824087433283363 1 0.179296791553497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736381 nonsynonymous SNV 0.454 1 18 hm5C_associated_SNPs_26509 0 0 1 0 2 Ribosome 1 0.500231643924581 1 0.999536712150839 hm5C_site_27048 DeepMRMD:1;iRNA_m5C:0.999536712150839 27049 chr21 45736381 45736381 1 + A T LUAD 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGGGGAGGGTCGCCCTCTGCCTTCGACCGGATCC < 41bp 1 0.0945408498300253 1 0.0797519385814667 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736381 nonsynonymous SNV 0.454 1 17 hm5C_associated_SNPs_26510 0 0 1 0 2 Ribosome 1 0.500231643920144 1 0.999536712159711 hm5C_site_27049 DeepMRMD:1;iRNA_m5C:0.999536712159711 27050 chr21 45736381 45736381 1 + A T LUAD 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGGGGAGGGTCGCCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.391490995512808 1 0.453803807497025 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736381 nonsynonymous SNV 0.454 1 16 hm5C_associated_SNPs_26511 0 0 1 0 2 Ribosome 1 0.500231643921141 1 0.999536712157718 hm5C_site_27050 DeepMRMD:1;iRNA_m5C:0.999536712157718 27051 chr15 69548656 69548656 1 + G A LUAD 69548650 + 69548630 69548670 41 ATGCACAGAGAGCCCCCTATCACCCCGATGGTGTGTTTATG ATGCACAGAGAGCCCCCTATCACCCCAATGGTGTGTTTATG < 41bp 1 0.406626665340816 1 0.38520148396492 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GLCE ENSG00000138604 CDS Human protein_coding chr15:69548650 chr15:69548656 nonsynonymous SNV 0.483 1 27 hm5C_associated_SNPs_26512 0 0 0 0 1 Ribosome 1 0.500231643923923 1 0.999536712152153 hm5C_site_27051 DeepMRMD:1;iRNA_m5C:0.999536712152153 27052 chr15 69548656 69548656 1 + G A LUAD 69548655 + 69548635 69548675 41 CAGAGAGCCCCCTATCACCCCGATGGTGTGTTTATGTCTTT CAGAGAGCCCCCTATCACCCCAATGGTGTGTTTATGTCTTT < 41bp 1 0.280871085355755 1 0.131332099437714 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLCE ENSG00000138604 CDS Human protein_coding chr15:69548655 chr15:69548656 nonsynonymous SNV 0.483 1 22 hm5C_associated_SNPs_26513 0 0 0 0 1 Ribosome 1 0.500231643920626 1 0.999536712158748 hm5C_site_27052 DeepMRMD:1;iRNA_m5C:0.999536712158748 27053 chrX 152088940 152088940 1 + C A LUAD 152088929 + 152088909 152088949 41 CCCCGGGAGCACTCCTACGTCCTGTCAGCGGCCAAGAAGAG CCCCGGGAGCACTCCTACGTCCTGTCAGCGGACAAGAAGAG < 41bp 1 0.147341702417223 1 0.11635223031044 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152088929 chrX:152088940 nonsynonymous SNV 0.359 3 32 hm5C_associated_SNPs_26514 0 0 0 0 1 chromatin 1 0.500231643921094 1 0.999536712157812 hm5C_site_27053 DeepMRMD:1;iRNA_m5C:0.999536712157812 27054 chr10 3155606 3155606 1 + G C LUAD 3155619 + 3155599 3155639 41 ACCCGCGGCTGGGATGAACGCAGCCGTACGCTCAGCTGTGC ACCCGCGCCTGGGATGAACGCAGCCGTACGCTCAGCTGTGC < 41bp 1 0.655468151270206 1 0.766318678855896 experiment 0.689063697459588 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3155619 chr10:3155606 nonsynonymous SNV 0.003 3 8 hm5C_associated_SNPs_26515 0 0 1 0 0 Nucleus 1 0.500231643909863 0.467362642288208 0.999536712180275 hm5C_site_27054 DeepMRMD:0.467362642288208;iRNA_m5C:0.999536712180275 27055 chr21 47831287 47831287 1 + A T LUAD 47831301 + 47831281 47831321 41 ACAGTCAGGCTGGCAGTCTGCAGAGCGAGCTGCTCTGCTCC ACAGTCTGGCTGGCAGTCTGCAGAGCGAGCTGCTCTGCTCC < 41bp 1 0.417198562489002 1 0.873905301094055 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831301 chr21:47831287 nonsynonymous SNV 0.000 1 7 hm5C_associated_SNPs_26516 0 0 1 0 0 Exosome 1 0.500174960426713 0.25218939781189 0.999650079146574 hm5C_site_27055 DeepMRMD:0.25218939781189;iRNA_m5C:0.999650079146574 27056 chr17 57644041 57644041 1 + C G LUAD 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACTACTCCAACTTTTCCTATTGAGAAACAAAGAAAAA < 41bp 1 0.155932237173101 1 0.128962606191635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644041 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_26517 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27056 DeepMRMD:1;iRNA_m5C:0.999536712157815 27057 chr13 48941739 48941739 1 + G T LUAD 48941724 + 48941704 48941744 41 TCATGATAAAACTCTTCAGACTGATTCTATAGACAGGTATT TCATGATAAAACTCTTCAGACTGATTCTATAGACATGTATT < 41bp 1 0.156471378555561 1 0.0509768426418304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48941724 chr13:48941739 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_26518 0 0 0 0 1 Nucleus 1 0.500231643925752 1 0.999536712148496 hm5C_site_27057 DeepMRMD:1;iRNA_m5C:0.999536712148496 27058 chr3 50005951 50005951 1 + C G LUAD 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTCCAGTTGAAGACCAAGATAAGT < 41bp 1 0.127133325791524 1 0.365459352731705 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005951 nonsynonymous SNV 0.979 1 26 hm5C_associated_SNPs_26520 0 0 1 0 0 Nucleus 1 0.500231643920141 1 0.999536712159717 hm5C_site_27058 DeepMRMD:1;iRNA_m5C:0.999536712159717 27059 chr7 130021012 130021012 1 + C T LUAD 130021005 + 130020985 130021025 41 AAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG AAGGTGAAGGAGCTGGAGGACCTGGAGTACCTGCAGGTCAG < 41bp 1 0.377291491981143 1 0.158527582883835 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021005 chr7:130021012 nonsynonymous SNV 0.995 0 28 hm5C_associated_SNPs_26521 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_27059 DeepMRMD:1;iRNA_m5C:0.999536712157815 27060 chr7 130021012 130021012 1 + C T LUAD 130021014 + 130020994 130021034 41 GAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGA GAGCTGGAGGACCTGGAGTACCTGCAGGTCAGAAGAGGGGA < 41bp 1 0.147628661531185 1 0.151678144931793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021014 chr7:130021012 nonsynonymous SNV 0.995 0 19 hm5C_associated_SNPs_26522 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920936 1 0.999536712158128 hm5C_site_27060 DeepMRMD:1;iRNA_m5C:0.999536712158128 27061 chr7 130021012 130021012 1 + C T LUAD 130021018 + 130020998 130021038 41 TGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGAGAAG TGGAGGACCTGGAGTACCTGCAGGTCAGAAGAGGGGAGAAG < 41bp 1 0.619685931260189 1 0.630238890647888 experiment 0.760628137479622 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021018 chr7:130021012 nonsynonymous SNV 0.995 0 15 hm5C_associated_SNPs_26523 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643612452 0.739522218704224 0.999536712775097 hm5C_site_27061 DeepMRMD:0.739522218704224;iRNA_m5C:0.999536712775097 27062 chr11 71946167 71946167 1 + C G LUAD 71946183 + 71946163 71946203 41 AAACCAATTCTGGCTGATATCGAGTACCTGCAGGACCAGCA AAACGAATTCTGGCTGATATCGAGTACCTGCAGGACCAGCA < 41bp 1 0.651027329448511 1 0.831960439682007 experiment 0.697945341102978 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946183 chr11:71946167 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_26524 0 0 1 0 2 Cytosol 1 0.500231643969128 0.336079120635986 0.999536712061744 hm5C_site_27062 DeepMRMD:0.336079120635986;iRNA_m5C:0.999536712061744 27063 chr7 142458454 142458454 1 + G A LUAD 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTATGA < 41bp 1 0.205294410606324 1 0.0964337289333344 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458454 nonsynonymous SNV 0.022 5 38 hm5C_associated_SNPs_26525 0 0 0 0 1 Cytosol 1 0.500231643921097 1 0.999536712157807 hm5C_site_27063 DeepMRMD:1;iRNA_m5C:0.999536712157807 27064 chr7 142458454 142458454 1 + G A LUAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTACAACTATGAGGAGAATTC < 41bp 1 0.319087142525255 1 0.370607137680054 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458454 nonsynonymous SNV 0.022 5 29 hm5C_associated_SNPs_26526 0 0 0 0 1 Cytosol 1 0.500231643923592 1 0.999536712152815 hm5C_site_27064 DeepMRMD:1;iRNA_m5C:0.999536712152815 27065 chr7 142458454 142458454 1 + G A LUAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTACAACTATGAGGAGAATTCTGT < 41bp 1 0.135489963964536 1 0.161931902170181 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458454 nonsynonymous SNV 0.022 5 26 hm5C_associated_SNPs_26527 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27065 DeepMRMD:1;iRNA_m5C:0.999536712157815 27066 chr7 142458454 142458454 1 + G A LUAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTATGAGGAGAATTCTGTCCC < 41bp 1 0.296419252879791 1 0.15296083688736 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458454 nonsynonymous SNV 0.022 5 23 hm5C_associated_SNPs_26528 0 0 0 0 1 Cytosol 1 0.500231650537877 1 0.999536698924247 hm5C_site_27066 DeepMRMD:1;iRNA_m5C:0.999536698924247 27067 chr7 142458454 142458454 1 + G A LUAD 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTATGAGGAGAATTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.121596982702306 1 0.0935375094413757 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458454 nonsynonymous SNV 0.022 5 9 hm5C_associated_SNPs_26529 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27067 DeepMRMD:1;iRNA_m5C:0.999536712157815 27068 chr7 142458454 142458454 1 + G A LUAD 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTATGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA < 41bp 1 0.130898881492144 1 0.270733416080475 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458454 nonsynonymous SNV 0.022 5 5 hm5C_associated_SNPs_26530 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27068 DeepMRMD:1;iRNA_m5C:0.999536712157815 27069 chr7 142458454 142458454 1 + G A LUAD 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTATGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.108727764414003 1 0.154587954282761 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458454 nonsynonymous SNV 0.022 5 4 hm5C_associated_SNPs_26531 0 0 0 0 1 Cytosol 1 0.500231643920855 1 0.999536712158289 hm5C_site_27069 DeepMRMD:1;iRNA_m5C:0.999536712158289 27070 chr7 142458454 142458454 1 + G A LUAD 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTATGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.015533250072982 1 0.0794515311717987 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458454 nonsynonymous SNV 0.022 5 3 hm5C_associated_SNPs_26532 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27070 DeepMRMD:1;iRNA_m5C:0.999536712157815 27071 chr7 142458454 142458454 1 + G A LUAD 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TATGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.136674097021913 1 0.0536071360111237 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458454 nonsynonymous SNV 0.022 5 2 hm5C_associated_SNPs_26533 0 0 0 0 1 Cytosol 1 0.500231643924331 1 0.999536712151339 hm5C_site_27071 DeepMRMD:1;iRNA_m5C:0.999536712151339 27072 chr14 90437534 90437534 1 + G T LUAD 90437526 + 90437506 90437546 41 GCTCTCTTTTTAGGAAGAAGCCAATCCTGCTTGTGCATGGT GCTCTCTTTTTAGGAAGAAGCCAATCCTTCTTGTGCATGGT < 41bp 1 0.057596082320162 1 0.111792951822281 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90437526 chr14:90437534 synonymous SNV . 0 29 hm5C_associated_SNPs_26534 0 0 1 0 2 chromatin 1 0.500231643908741 1 0.999536712182517 hm5C_site_27072 DeepMRMD:1;iRNA_m5C:0.999536712182517 27073 chr20 62374330 62374330 1 + G T LUAD 62374321 + 62374301 62374341 41 AGCCTGCCGCTGGAAGAAAGCCTGCCAGCGGTTCCTGGACT AGCCTGCCGCTGGAAGAAAGCCTGCCAGCTGTTCCTGGACT < 41bp 1 0.130509782543558 1 0.189883172512054 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62374321 chr20:62374330 nonsynonymous SNV 0.984 3 30 hm5C_associated_SNPs_26535 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_27073 DeepMRMD:1;iRNA_m5C:0.999536712157815 27074 chr17 57728627 57728627 1 + G A LUAD 57728643 + 57728623 57728663 41 AGTGGATGTCTTCTTTCCTCCAGAAGCACAAAATGATTTTC AGTGAATGTCTTCTTTCCTCCAGAAGCACAAAATGATTTTC < 41bp 1 0.491769316598084 1 0.740119934082031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57728643 chr17:57728627 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_26537 0 0 1 0 2 Nucleus 1 0.50023160636584 0.519760131835938 0.999536787268321 hm5C_site_27074 DeepMRMD:0.519760131835938;iRNA_m5C:0.999536787268321 27075 chr1 16261133 16261133 1 + G C LUAD 16261121 + 16261101 16261141 41 CCATGCCTGTGATCGACGATCGTCCGGCAGACGCGGGCTCA CCATGCCTGTGATCGACGATCGTCCGGCAGACCCGGGCTCA < 41bp 1 0.176648926292124 1 0.255035281181335 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16261121 chr1:16261133 nonsynonymous SNV 0.002 1 33 hm5C_associated_SNPs_26538 0 0 1 0 0 Endoplasmic reticulum 1 0.500231620709638 1 0.999536758580724 hm5C_site_27075 DeepMRMD:1;iRNA_m5C:0.999536758580724 27076 chr7 142460411 142460411 1 + C T LUAD 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTT < 41bp 1 0.0271210533260888 1 0.0765614807605743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460411 nonsynonymous SNV 0.962 3 41 hm5C_associated_SNPs_26539 0 0 0 0 1 Cytosol 1 0.500231643494452 1 0.999536713011096 hm5C_site_27076 DeepMRMD:1;iRNA_m5C:0.999536713011096 27077 chr7 142460411 142460411 1 + C T LUAD 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTTA < 41bp 1 0.585416975099043 1 0.397889822721481 experiment 0.829166049801913 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460411 nonsynonymous SNV 0.962 3 40 hm5C_associated_SNPs_26540 0 0 0 0 1 Cytosol 1 0.500231644179508 1 0.999536711640984 hm5C_site_27077 DeepMRMD:1;iRNA_m5C:0.999536711640984 27078 chr7 142460411 142460411 1 + C T LUAD 142460403 + 142460383 142460423 41 GTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGTGAT GTGGGCTTCCTTGAGGGAGGCAAGGATTTATGTCAGGTGAT < 41bp 1 0.521233218775499 1 0.42018848657608 experiment 0.957533562449003 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460403 chr7:142460411 nonsynonymous SNV 0.962 3 29 hm5C_associated_SNPs_26541 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27078 DeepMRMD:1;iRNA_m5C:0.999536712157815 27079 chr7 142460411 142460411 1 + C T LUAD 142460416 + 142460396 142460436 41 AGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAACCCTT AGGGAGGCAAGGATTTATGTCAGGTGATTTGACCAACCCTT < 41bp 1 0.625806397370236 1 0.805195271968842 experiment 0.748387205259527 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460416 chr7:142460411 nonsynonymous SNV 0.962 3 16 hm5C_associated_SNPs_26542 0 0 0 0 1 Cytosol 1 0.500231644186698 0.389609456062316 0.999536711626603 hm5C_site_27079 DeepMRMD:0.389609456062316;iRNA_m5C:0.999536711626603 27080 chr7 100732027 100732027 1 + G C LUAD 100732032 + 100732012 100732052 41 GCCCAGCCCAGCCCTGGGGCCGAATCTGGACGGCTCTGGCC GCCCAGCCCAGCCCTCGGGCCGAATCTGGACGGCTCTGGCC < 41bp 1 0.227132077879564 1 0.142116397619247 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100732032 chr7:100732027 synonymous SNV . 0 16 hm5C_associated_SNPs_26543 0 0 1 0 0 nucleus 1 0.500231643921417 1 0.999536712157166 hm5C_site_27080 DeepMRMD:1;iRNA_m5C:0.999536712157166 27081 chr1 161751777 161751777 1 + C T LUAD 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GACATTTGGGACATCAACAACTAAATCTGTACAGGTAATTA < 41bp 1 0.35391538720338 1 0.262138694524765 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751777 stopgain 0.854 0 22 hm5C_associated_SNPs_26544 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644153006 1 0.999536711693989 hm5C_site_27081 DeepMRMD:1;iRNA_m5C:0.999536711693989 27082 chr7 142460317 142460317 1 + C T LUAD 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTTCT < 41bp 1 0.650715084787553 1 0.234076261520386 experiment 0.698569830424894 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460317 nonsynonymous SNV 0.003 2 39 hm5C_associated_SNPs_26545 0 0 0 0 1 Cytosol 1 0.50023163844923 1 0.99953672310154 hm5C_site_27082 DeepMRMD:1;iRNA_m5C:0.99953672310154 27083 chr7 142460317 142460317 1 + C T LUAD 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTTCTGTG < 41bp 1 0.236792683484552 1 0.128751754760742 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460317 nonsynonymous SNV 0.003 2 36 hm5C_associated_SNPs_26546 0 0 0 0 1 Cytosol 1 0.500231631866684 1 0.999536736266631 hm5C_site_27083 DeepMRMD:1;iRNA_m5C:0.999536736266631 27084 chr7 142460317 142460317 1 + C T LUAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTTCTGTGCTGAG < 41bp 1 0.17795839950116 1 0.121344387531281 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460317 nonsynonymous SNV 0.003 2 31 hm5C_associated_SNPs_26547 0 0 0 0 1 Cytosol 1 0.500231659079159 1 0.999536681841682 hm5C_site_27084 DeepMRMD:1;iRNA_m5C:0.999536681841682 27085 chr7 142460317 142460317 1 + C T LUAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTTCTGTGCTGAGCCAGGCTA < 41bp 1 0.197783832767921 1 0.105800539255142 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460317 nonsynonymous SNV 0.003 2 23 hm5C_associated_SNPs_26548 0 0 0 0 1 Cytosol 1 0.500231643970211 1 0.999536712059577 hm5C_site_27085 DeepMRMD:1;iRNA_m5C:0.999536712059577 27086 chr7 142460317 142460317 1 + C T LUAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTTCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.548741559241737 1 0.265471279621124 experiment 0.902516881516527 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460317 nonsynonymous SNV 0.003 2 20 hm5C_associated_SNPs_26549 0 0 0 0 1 Cytosol 1 0.500231643922858 1 0.999536712154284 hm5C_site_27086 DeepMRMD:1;iRNA_m5C:0.999536712154284 27087 chr7 142460317 142460317 1 + C T LUAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTTCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.486161082017019 1 0.105875253677368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460317 nonsynonymous SNV 0.003 2 15 hm5C_associated_SNPs_26550 0 0 0 0 1 Cytosol 1 0.500231643919456 1 0.999536712161089 hm5C_site_27087 DeepMRMD:1;iRNA_m5C:0.999536712161089 27088 chr7 142460317 142460317 1 + C T LUAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTTCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.357417095018589 1 0.22456231713295 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460317 nonsynonymous SNV 0.003 2 10 hm5C_associated_SNPs_26551 0 0 0 0 1 Cytosol 1 0.500231643909752 1 0.999536712180496 hm5C_site_27088 DeepMRMD:1;iRNA_m5C:0.999536712180496 27089 chr7 142460317 142460317 1 + C T LUAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTTCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.52778281045729 1 0.647912383079529 experiment 0.944434379085419 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460317 nonsynonymous SNV 0.003 2 9 hm5C_associated_SNPs_26552 0 0 0 0 1 Cytosol 1 0.500231735747745 0.704175233840942 0.999536528504511 hm5C_site_27089 DeepMRMD:0.704175233840942;iRNA_m5C:0.999536528504511 27090 chr7 142460317 142460317 1 + C T LUAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTTCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.376342617559312 1 0.132927566766739 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460317 nonsynonymous SNV 0.003 2 5 hm5C_associated_SNPs_26553 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_27090 DeepMRMD:1;iRNA_m5C:0.999536712157814 27091 chr1 12061527 12061527 1 + C T LUAD 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCTAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.265180094551695 1 0.083954930305481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061527 stopgain 0.943 1 4 hm5C_associated_SNPs_26554 0 0 1 0 2 Ribosome 1 0.500231636560262 1 0.999536726879477 hm5C_site_27091 DeepMRMD:1;iRNA_m5C:0.999536726879477 27092 chr2 98263846 98263846 1 + A T LUAD 98263858 + 98263838 98263878 41 CTTCAGGCACCAGGGAAGACCCTAATTTAGTCCCCTCCATC CTTCAGGCTCCAGGGAAGACCCTAATTTAGTCCCCTCCATC < 41bp 1 0.328903541347873 1 0.0337239801883698 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263858 chr2:98263846 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_26555 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27092 DeepMRMD:1;iRNA_m5C:0.999536712157815 27093 chr1 218458660 218458660 1 + T C LUAD 218458666 + 218458646 218458686 41 CCGGCGCAGAAAAATGGCAGCCGCCGCTCCGGACTCACGTG CCGGCGCAGAAAAACGGCAGCCGCCGCTCCGGACTCACGTG < 41bp 1 0.335199722043407 1 0.216748684644699 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RRP15 ENSG00000067533 CDS Human protein_coding chr1:218458666 chr1:218458660 nonsynonymous SNV 0.053 3 15 hm5C_associated_SNPs_26556 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27093 DeepMRMD:1;iRNA_m5C:0.999536712157815 27094 chr12 6635486 6635486 1 + C T LUAD 6635482 + 6635462 6635502 41 GGCAAACGTCACCCCCCCTTCCGGCTGCCTCAGGAACACAG GGCAAACGTCACCCCCCCTTCCGGTTGCCTCAGGAACACAG < 41bp 1 0.399824476176789 1 0.47621613740921 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6635482 chr12:6635486 synonymous SNV . 0 25 hm5C_associated_SNPs_26557 0 0 1 0 2 Nucleus 1 0.500231643921096 1 0.999536712157807 hm5C_site_27094 DeepMRMD:1;iRNA_m5C:0.999536712157807 27095 chr19 1434826 1434826 1 + G T LUAD 1434836 + 1434816 1434856 41 TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG TCCGTGCCAGTGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG < 41bp 1 0.282393828816495 1 0.117927610874176 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434836 chr19:1434826 nonsynonymous SNV 0.960 1 11 hm5C_associated_SNPs_26558 0 0 1 0 1 chromatin 1 0.500231643921049 1 0.999536712157901 hm5C_site_27095 DeepMRMD:1;iRNA_m5C:0.999536712157901 27096 chr19 1434826 1434826 1 + G T LUAD 1434837 + 1434817 1434857 41 CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC CCGTGCCAGTGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC < 41bp 1 0.357945158792271 1 0.105299979448318 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434837 chr19:1434826 nonsynonymous SNV 0.960 1 10 hm5C_associated_SNPs_26559 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27096 DeepMRMD:1;iRNA_m5C:0.999536712157815 27097 chr19 1434826 1434826 1 + G T LUAD 1434838 + 1434818 1434858 41 CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT CGTGCCAGTGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT < 41bp 1 0.455051863275202 1 0.437694728374481 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434838 chr19:1434826 nonsynonymous SNV 0.960 1 9 hm5C_associated_SNPs_26560 0 0 1 0 1 chromatin 1 0.500231643913536 1 0.999536712172928 hm5C_site_27097 DeepMRMD:1;iRNA_m5C:0.999536712172928 27098 chr19 39948326 39948326 1 + G C LUAD 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATCAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA < 41bp 1 0.272523606517295 1 0.156036287546158 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948326 nonsynonymous SNV 0.986 3 4 hm5C_associated_SNPs_26562 0 0 1 0 2 Nucleus 1 0.500231643921584 1 0.999536712156832 hm5C_site_27098 DeepMRMD:1;iRNA_m5C:0.999536712156832 27099 chr19 39948326 39948326 1 + G C LUAD 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATCAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG < 41bp 1 0.527111049441185 1 0.310155034065247 experiment 0.94577790111763 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948326 nonsynonymous SNV 0.986 3 3 hm5C_associated_SNPs_26563 0 0 1 0 2 Nucleus 1 0.500197293586725 1 0.99960541282655 hm5C_site_27099 DeepMRMD:1;iRNA_m5C:0.99960541282655 27100 chr2 167108323 167108323 1 + C T LUAD 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAAAGGCTGAACCTATGAATTCCGATGAGCCAG < 41bp 1 0.385462051592107 1 0.504385113716125 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108323 nonsynonymous SNV 0.997 1 11 hm5C_associated_SNPs_26564 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643904809 0.99122977256775 0.999536712190382 hm5C_site_27100 DeepMRMD:0.99122977256775;iRNA_m5C:0.999536712190382 27101 chr16 57243045 57243045 1 + A T LUAD 57243043 + 57243023 57243063 41 GAGTTATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA GAGTTATTCCACTGGAAGATCCTCTGGGACCAGCTGTTATA < 41bp 1 0.0712323257144311 1 0.0638763010501862 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57243043 chr16:57243045 synonymous SNV . 0 23 hm5C_associated_SNPs_26566 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27101 DeepMRMD:1;iRNA_m5C:0.999536712157815 27102 chr8 145150923 145150923 1 + A T LUAD 145150914 + 145150894 145150934 41 GTCTCACCGTGGCCTCCTCTCTTCCTTGGACCACACCAGGT GTCTCACCGTGGCCTCCTCTCTTCCTTGGTCCACACCAGGT < 41bp 1 0.313712716929657 1 0.167755424976349 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150914 chr8:145150923 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_26568 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27102 DeepMRMD:1;iRNA_m5C:0.999536712157815 27103 chr17 17698452 17698452 1 + G T LUAD 17698433 + 17698413 17698453 41 TGCTCCAGACCCCACTACAGCAGCTTTTGACTGTTTCCCGG TGCTCCAGACCCCACTACAGCAGCTTTTGACTGTTTCCCTG < 41bp 1 0.383311200986562 1 0.231514096260071 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17698433 chr17:17698452 synonymous SNV . 0 40 hm5C_associated_SNPs_26569 0 0 1 0 0 chromatin 1 0.500231643925662 1 0.999536712148675 hm5C_site_27103 DeepMRMD:1;iRNA_m5C:0.999536712148675 27104 chrX 118112367 118112367 1 + C A LUAD 118112379 + 118112359 118112399 41 TGGAGTCTCATGAGAATGCACTGCATGATGCAGAAATAGCA TGGAGTCTAATGAGAATGCACTGCATGATGCAGAAATAGCA < 41bp 1 0.491790852305217 1 0.112191468477249 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118112379 chrX:118112367 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_26570 0 0 1 0 2 chromatin 1 0.500189944618913 1 0.999620110762175 hm5C_site_27104 DeepMRMD:1;iRNA_m5C:0.999620110762175 27105 chr19 8320499 8320499 1 + G A LUAD 8320515 + 8320495 8320535 41 AGCTGTCTCTCCTGGCCGCCCAGTGTGGCCTCACGCTGCAG AGCTATCTCTCCTGGCCGCCCAGTGTGGCCTCACGCTGCAG < 41bp 1 0.553412616885079 1 0.499053388834 experiment 0.893174766229842 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8320515 chr19:8320499 synonymous SNV . 0 5 hm5C_associated_SNPs_26571 0 0 1 0 1 chromatin 1 0.500231458405322 1 0.999537083189355 hm5C_site_27105 DeepMRMD:1;iRNA_m5C:0.999537083189355 27106 chr2 189873907 189873907 1 + C G LUAD 189873898 + 189873878 189873918 41 GATGGTTCTCGTAAAAACCCCGCTAGAAACTGCAGAGACCT GATGGTTCTCGTAAAAACCCCGCTAGAAAGTGCAGAGACCT < 41bp 1 0.282796560691965 1 0.378820776939392 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189873898 chr2:189873907 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_26573 0 0 0 0 1 Endoplasmic reticulum 1 0.500226042675434 1 0.999547914649131 hm5C_site_27106 DeepMRMD:1;iRNA_m5C:0.999547914649131 27107 chr20 5958578 5958578 1 + C T LUAD 5958574 + 5958554 5958594 41 TGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAA TGTTTGTGGTAACACCACGACCACTTCTGGTCTGACGGTAA < 41bp 1 0.1290361399391 1 0.296220630407333 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5958574 chr20:5958578 synonymous SNV . 0 25 hm5C_associated_SNPs_26574 0 0 1 0 2 Ribosome 1 0.500234489069701 1 0.999531021860598 hm5C_site_27107 DeepMRMD:1;iRNA_m5C:0.999531021860598 27108 chr7 55259441 55259441 1 + G T LUAD 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTCGCTTTGTGCACCGCGA < 41bp 1 0.0695586641786592 1 0.189282596111298 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259441 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_26576 0 0 1 0 1 Nucleus 1 0.50023164392109 1 0.999536712157819 hm5C_site_27108 DeepMRMD:1;iRNA_m5C:0.999536712157819 27109 chr16 22237269 22237269 1 + G T LUAD 22237252 + 22237232 22237272 41 GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTCC GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGTTCC < 41bp 1 0.382923369297669 1 0.547179043292999 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22237252 chr16:22237269 synonymous SNV . 0 38 hm5C_associated_SNPs_26577 0 0 1 0 1 Nucleus 1 0.50023164388355 0.905641913414002 0.9995367122329 hm5C_site_27109 DeepMRMD:0.905641913414002;iRNA_m5C:0.9995367122329 27110 chr4 57181002 57181002 1 + C G LUAD 57180982 + 57180962 57181002 41 GACCAGGAACGCCTGAAACCCGAAGGACAAAGAGAACACTC GACCAGGAACGCCTGAAACCCGAAGGACAAAGAGAACACTG < 41bp 1 0.692261725393377 1 0.795059263706207 experiment 0.615476549213245 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180982 chr4:57181002 nonsynonymous SNV 0.002 1 41 hm5C_associated_SNPs_26578 0 0 0 0 0 cytosol 1 0.500231643921092 0.409881472587586 0.999536712157816 hm5C_site_27110 DeepMRMD:0.409881472587586;iRNA_m5C:0.999536712157816 27111 chr14 61346468 61346468 1 + G C LUAD 61346465 + 61346445 61346485 41 CACTGGCACCTATTCACAAGCTTGAAGAAGCTCTGTATGAA CACTGGCACCTATTCACAAGCTTCAAGAAGCTCTGTATGAA < 41bp 1 0.481213785125799 1 0.56866842508316 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61346465 chr14:61346468 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_26579 0 0 1 0 1 Ribosome 1 0.500219506114753 0.86266314983368 0.999560987770493 hm5C_site_27111 DeepMRMD:0.86266314983368;iRNA_m5C:0.999560987770493 27112 chr12 6969609 6969609 1 + A T LUAD 6969628 + 6969608 6969648 41 CAGCAGGATGCCCAGGAGTTCTTCCTTCACCTTATCAACAT CTGCAGGATGCCCAGGAGTTCTTCCTTCACCTTATCAACAT < 41bp 1 0.245665953328216 1 0.0575905442237854 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6969628 chr12:6969609 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_26580 0 0 1 0 2 Nucleus 1 0.50023164392104 1 0.99953671215792 hm5C_site_27112 DeepMRMD:1;iRNA_m5C:0.99953671215792 27113 chr8 99019735 99019735 1 + T A LUAD 99019717 + 99019697 99019737 41 GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGACCATGG GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGACCAAGG < 41bp 1 0.543612279902066 1 0.241162359714508 experiment 0.912775440195868 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019717 chr8:99019735 nonsynonymous SNV 0.839 4 39 hm5C_associated_SNPs_26582 0 0 0 0 2 Cytosol 1 0.500231643921076 1 0.999536712157848 hm5C_site_27113 DeepMRMD:1;iRNA_m5C:0.999536712157848 27114 chr1 104115874 104115874 1 + G T LUAD 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATCGAGAACTACAATGATTCTACTCAGGTAAATTTTTTTA < 41bp 1 0.305937660892667 1 0.167553454637527 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115874 nonsynonymous SNV 0.313 2 20 hm5C_associated_SNPs_26583 0 0 0 0 1 exosome 1 0.500231643922272 1 0.999536712155456 hm5C_site_27114 DeepMRMD:1;iRNA_m5C:0.999536712155456 27115 chr13 31903674 31903674 1 + C T LUAD 31903694 + 31903674 31903714 41 CATCAAGTTCCCATATCGTTCCACAAACACTGGAACATCGA TATCAAGTTCCCATATCGTTCCACAAACACTGGAACATCGA < 41bp 1 0.389824200124032 1 0.143104761838913 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31903694 chr13:31903674 nonsynonymous SNV 0.989 3 1 hm5C_associated_SNPs_26584 0 0 1 0 1 Ribosome 1 0.500231643918891 1 0.999536712162217 hm5C_site_27115 DeepMRMD:1;iRNA_m5C:0.999536712162217 27116 chr5 140347671 140347671 1 + A T LUAD 140347691 + 140347671 140347711 41 AGCCACAGATGGGGGAATACCGCAGCTCACATCCCTGCGTA TGCCACAGATGGGGGAATACCGCAGCTCACATCCCTGCGTA < 41bp 1 0.649196149931284 1 0.89106023311615 experiment 0.701607700137433 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCDHAC2 ENSG00000243232 CDS Human protein_coding chr5:140347691 chr5:140347671 synonymous SNV . 0 1 hm5C_associated_SNPs_26585 0 0 0 0 0 exosome 1 0.500231655178984 0.2178795337677 0.999536689642031 hm5C_site_27116 DeepMRMD:0.2178795337677;iRNA_m5C:0.999536689642031 27117 chr2 197541345 197541345 1 + G C LUAD 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTCTGCAAAAAGAGCTGCTAGAATCAACTATTGCA < 41bp 1 0.236060001583348 1 0.0744020342826843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541345 nonsynonymous SNV 0.009 0 9 hm5C_associated_SNPs_26586 0 0 1 8 1 Endoplasmic reticulum 1 0.500231776490734 1 0.999536447018532 hm5C_site_27117 DeepMRMD:1;iRNA_m5C:0.999536447018532 27118 chr7 142459775 142459775 1 + A T LUAD 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCTGT < 41bp 1 0.511426743254796 1 0.68755042552948 experiment 0.977146513490408 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459775 synonymous SNV . 0 39 hm5C_associated_SNPs_26587 0 0 0 0 0 Cytosol 1 0.500231643920634 0.62489914894104 0.999536712158732 hm5C_site_27118 DeepMRMD:0.62489914894104;iRNA_m5C:0.999536712158732 27119 chr7 142459775 142459775 1 + A T LUAD 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATGACATCATGTTAATCAAGCTCTCCTCACGTGCTGTAATC < 41bp 1 0.182136121731517 1 0.0851646661758423 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459775 synonymous SNV . 0 35 hm5C_associated_SNPs_26588 0 0 0 0 0 Cytosol 1 0.500231644292474 1 0.999536711415052 hm5C_site_27119 DeepMRMD:1;iRNA_m5C:0.999536711415052 27120 chr7 142459775 142459775 1 + A T LUAD 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA GACATCATGTTAATCAAGCTCTCCTCACGTGCTGTAATCAA < 41bp 1 0.441331528091043 1 0.667974352836609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459775 synonymous SNV . 0 33 hm5C_associated_SNPs_26589 0 0 0 0 0 Cytosol 1 0.500231643922523 0.664051294326782 0.999536712154953 hm5C_site_27120 DeepMRMD:0.664051294326782;iRNA_m5C:0.999536712154953 27121 chr7 142459775 142459775 1 + A T LUAD 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG CATCATGTTAATCAAGCTCTCCTCACGTGCTGTAATCAACG < 41bp 1 0.269236471967231 1 0.160412043333054 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459775 synonymous SNV . 0 31 hm5C_associated_SNPs_26590 0 0 0 0 0 Cytosol 1 0.500231645553742 1 0.999536708892516 hm5C_site_27121 DeepMRMD:1;iRNA_m5C:0.999536708892516 27122 chr7 142459775 142459775 1 + A T LUAD 142459766 + 142459746 142459786 41 ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC ATCATGTTAATCAAGCTCTCCTCACGTGCTGTAATCAACGC < 41bp 1 0.360510920240307 1 0.17656672000885 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459766 chr7:142459775 synonymous SNV . 0 30 hm5C_associated_SNPs_26591 0 0 0 0 0 Cytosol 1 0.500234069263084 1 0.999531861473831 hm5C_site_27122 DeepMRMD:1;iRNA_m5C:0.999531861473831 27123 chr7 142459775 142459775 1 + A T LUAD 142459770 + 142459750 142459790 41 TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC TGTTAATCAAGCTCTCCTCACGTGCTGTAATCAACGCCCGC < 41bp 1 0.369793751596309 1 0.152848184108734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459770 chr7:142459775 synonymous SNV . 0 26 hm5C_associated_SNPs_26593 0 0 0 0 0 Cytosol 1 0.5002315886118 1 0.9995368227764 hm5C_site_27123 DeepMRMD:1;iRNA_m5C:0.9995368227764 27124 chr7 142459775 142459775 1 + A T LUAD 142459774 + 142459754 142459794 41 AATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCGTGT AATCAAGCTCTCCTCACGTGCTGTAATCAACGCCCGCGTGT < 41bp 1 0.669177803686265 1 0.0510300099849701 experiment 0.66164439262747 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459774 chr7:142459775 synonymous SNV . 0 22 hm5C_associated_SNPs_26594 0 0 0 0 0 Cytosol 1 0.500231311118859 1 0.999537377762283 hm5C_site_27124 DeepMRMD:1;iRNA_m5C:0.999537377762283 27125 chr7 142459775 142459775 1 + A T LUAD 142459781 + 142459761 142459801 41 CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCAT CTCTCCTCACGTGCTGTAATCAACGCCCGCGTGTCCACCAT < 41bp 1 0.67451624275575 1 0.765332818031311 experiment 0.650967514488501 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459781 chr7:142459775 synonymous SNV . 0 15 hm5C_associated_SNPs_26595 0 0 0 0 0 Cytosol 1 0.500231643921118 0.469334363937378 0.999536712157765 hm5C_site_27125 DeepMRMD:0.469334363937378;iRNA_m5C:0.999536712157765 27126 chr7 142459775 142459775 1 + A T LUAD 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTGCTGTAATCAACGCCCGCGTGTCCACCATCTC < 41bp 1 0.599355081913221 1 0.180196017026901 experiment 0.801289836173558 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459775 synonymous SNV . 0 12 hm5C_associated_SNPs_26596 0 0 0 0 0 Cytosol 1 0.500231643920995 1 0.999536712158009 hm5C_site_27126 DeepMRMD:1;iRNA_m5C:0.999536712158009 27127 chr7 142459775 142459775 1 + A T LUAD 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTGCTGTAATCAACGCCCGCGTGTCCACCATCTCTC < 41bp 1 0.508941966097343 1 0.0653618574142456 experiment 0.982116067805314 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459775 synonymous SNV . 0 10 hm5C_associated_SNPs_26597 0 0 0 0 0 Cytosol 1 0.500231643936124 1 0.999536712127752 hm5C_site_27127 DeepMRMD:1;iRNA_m5C:0.999536712127752 27128 chr7 142459775 142459775 1 + A T LUAD 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTGCTGTAATCAACGCCCGCGTGTCCACCATCTCTCT < 41bp 1 0.515407120359892 1 0.120769292116165 experiment 0.969185759280215 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459775 synonymous SNV . 0 9 hm5C_associated_SNPs_26598 0 0 0 0 0 Cytosol 1 0.500231877500879 1 0.999536244998241 hm5C_site_27128 DeepMRMD:1;iRNA_m5C:0.999536244998241 27129 chr7 142459775 142459775 1 + A T LUAD 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CGTGCTGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC < 41bp 1 0.422463677983228 1 0.16838863492012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459775 synonymous SNV . 0 6 hm5C_associated_SNPs_26600 0 0 0 0 0 Cytosol 1 0.500231644115079 1 0.999536711769842 hm5C_site_27129 DeepMRMD:1;iRNA_m5C:0.999536711769842 27130 chr7 142459775 142459775 1 + A T LUAD 142459795 + 142459775 142459815 41 AGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG TGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG < 41bp 1 0.336074844288296 1 0.0730604827404022 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459795 chr7:142459775 synonymous SNV . 0 1 hm5C_associated_SNPs_26601 0 0 0 0 0 Cytosol 1 0.500231655725104 1 0.999536688549793 hm5C_site_27130 DeepMRMD:1;iRNA_m5C:0.999536688549793 27131 chr14 101419737 101419737 1 + C T LUAD 101419734 + 101419714 101419754 41 TGAGTCATGGACGATGAATACTACGTGTCTGAAACTCTGAG TGAGTCATGGACGATGAATACTATGTGTCTGAAACTCTGAG < 41bp 1 0.362606648435354 1 0.044477105140686 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419734 chr14:101419737 . . 0 24 hm5C_associated_SNPs_26602 0 0 1 0 0 unknown 1 0.499117095032735 1 1 hm5C_site_27131 DeepMRMD:1;iRNA_m5C:1 27132 chr14 101419737 101419737 1 + C T LUAD 101419742 + 101419722 101419762 41 GGACGATGAATACTACGTGTCTGAAACTCTGAGGTCCAACA GGACGATGAATACTATGTGTCTGAAACTCTGAGGTCCAACA < 41bp 1 0.571416244702617 1 0.0946499705314636 experiment 0.857167510594766 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419742 chr14:101419737 . . 0 16 hm5C_associated_SNPs_26603 0 0 1 0 0 unknown 1 0.500231643416067 1 0.999536713167867 hm5C_site_27132 DeepMRMD:1;iRNA_m5C:0.999536713167867 27133 chr14 101419737 101419737 1 + C T LUAD 101419748 + 101419728 101419768 41 TGAATACTACGTGTCTGAAACTCTGAGGTCCAACAGAAAAC TGAATACTATGTGTCTGAAACTCTGAGGTCCAACAGAAAAC < 41bp 1 0.340240485525851 1 0.193256169557571 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419748 chr14:101419737 . . 0 10 hm5C_associated_SNPs_26604 0 0 1 0 0 unknown 1 0.500231583252411 1 0.999536833495178 hm5C_site_27133 DeepMRMD:1;iRNA_m5C:0.999536833495178 27134 chr7 4824630 4824630 1 + G A LUAD 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGA < 41bp 1 0.170089603306863 1 0.189379930496216 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824630 synonymous SNV . 0 41 hm5C_associated_SNPs_26607 0 0 1 0 2 chromatin 1 0.500231643933261 1 0.999536712133478 hm5C_site_27134 DeepMRMD:1;iRNA_m5C:0.999536712133478 27135 chr7 98589832 98589832 1 + C A LUAD 98589838 + 98589818 98589858 41 TGAAAATAGAACAGCGGGAACGCTACAAGAGCGGTACGTCT TGAAAATAGAACAGAGGGAACGCTACAAGAGCGGTACGTCT < 41bp 1 0.183720665828466 1 0.34137624502182 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98589838 chr7:98589832 synonymous SNV . 0 15 hm5C_associated_SNPs_26608 0 0 0 0 2 Nucleus 1 0.500231643929168 1 0.999536712141665 hm5C_site_27135 DeepMRMD:1;iRNA_m5C:0.999536712141665 27136 chr10 1170222 1170222 1 + G T LUAD 1170216 + 1170196 1170236 41 TGGTTTCAGGCAGCGATGACCGCACGGTGAAAGTCTGGGAC TGGTTTCAGGCAGCGATGACCGCACGTTGAAAGTCTGGGAC < 41bp 1 0.425739825421344 1 0.435390830039978 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR37 ENSG00000047056 CDS Human protein_coding chr10:1170216 chr10:1170222 nonsynonymous SNV 0.998 4 27 hm5C_associated_SNPs_26609 0 0 1 0 2 Cytosol 1 0.500261848373207 1 0.999476303253586 hm5C_site_27136 DeepMRMD:1;iRNA_m5C:0.999476303253586 27137 chr7 98589833 98589833 1 + G T LUAD 98589838 + 98589818 98589858 41 TGAAAATAGAACAGCGGGAACGCTACAAGAGCGGTACGTCT TGAAAATAGAACAGCTGGAACGCTACAAGAGCGGTACGTCT < 41bp 1 0.184628459135504 1 0.351111620664597 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98589838 chr7:98589833 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_26610 0 0 0 0 2 Nucleus 1 0.50023164392918 1 0.999536712141641 hm5C_site_27137 DeepMRMD:1;iRNA_m5C:0.999536712141641 27138 chr1 145539090 145539090 1 + C T LUAD 145539084 + 145539064 145539104 41 CTATCACTGTCTCAAGTCATCACTAACAATGTGAGTCTGGT CTATCACTGTCTCAAGTCATCACTAATAATGTGAGTCTGGT < 41bp 1 0.125056296823565 1 0.22474929690361 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539084 chr1:145539090 synonymous SNV . 0 27 hm5C_associated_SNPs_26611 0 0 0 0 1 exosome 1 0.500231321924685 1 0.99953735615063 hm5C_site_27138 DeepMRMD:1;iRNA_m5C:0.99953735615063 27139 chr6 36442578 36442578 1 + A C LUAD 36442596 + 36442576 36442616 41 TGACTATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACA TGCCTATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACA < 41bp 1 0.178472986578394 1 0.408287703990936 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KCTD20 ENSG00000112078 CDS Human protein_coding chr6:36442596 chr6:36442578 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_26612 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27139 DeepMRMD:1;iRNA_m5C:0.999536712157815 27140 chr12 51108375 51108375 1 + A G LUAD 51108355 + 51108335 51108375 41 ATACATGTGTGACAAACTTGCCAAAGCCCCGGCAAAAACAA ATACATGTGTGACAAACTTGCCAAAGCCCCGGCAAAAACAG < 41bp 1 0.20763434843155 1 0.211563527584076 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51108355 chr12:51108375 synonymous SNV . 0 41 hm5C_associated_SNPs_26613 0 0 0 0 1 Nucleus 1 0.500231643822676 1 0.999536712354647 hm5C_site_27140 DeepMRMD:1;iRNA_m5C:0.999536712354647 27141 chr13 48828025 48828025 1 + G T LUAD 48828044 + 48828024 48828064 41 AGGTGTTATTCTAGGAGGAGCATACTTGTACAAATATTTTG ATGTGTTATTCTAGGAGGAGCATACTTGTACAAATATTTTG < 41bp 1 0.0884166972952473 1 0.117158114910126 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITM2B ENSG00000136156 CDS Human protein_coding chr13:48828044 chr13:48828025 nonsynonymous SNV 0.947 3 2 hm5C_associated_SNPs_26614 0 0 1 0 2 Ribosome 1 0.500231643921004 1 0.999536712157992 hm5C_site_27141 DeepMRMD:1;iRNA_m5C:0.999536712157992 27142 chr5 153783750 153783750 1 + G T LUAD 153783741 + 153783721 153783761 41 TACAGGAAGTATGTGCCCTACAAGGTCCCGGCCGGAGTCAG TACAGGAAGTATGTGCCCTACAAGGTCCCTGCCGGAGTCAG < 41bp 1 0.613211107067931 1 0.168331831693649 experiment 0.773577785864137 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153783741 chr5:153783750 synonymous SNV . 0 30 hm5C_associated_SNPs_26615 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27142 DeepMRMD:1;iRNA_m5C:0.999536712157815 27143 chr17 18167939 18167939 1 + T G LUAD 18167953 + 18167933 18167973 41 TGCTCATCGGCAGCCTGGAGCAGGCCAGCCTGCCCTGCCAC TGCTCAGCGGCAGCCTGGAGCAGGCCAGCCTGCCCTGCCAC < 41bp 1 0.677281923558503 1 0.930401980876923 experiment 0.645436152882994 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MIEF2 ENSG00000177427 CDS Human protein_coding chr17:18167953 chr17:18167939 nonsynonymous SNV 0.033 1 7 hm5C_associated_SNPs_26616 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164398251 0.139196038246154 0.999536712034979 hm5C_site_27143 DeepMRMD:0.139196038246154;iRNA_m5C:0.999536712034979 27144 chr16 56716476 56716476 1 + G A LUAD 56716470 + 56716450 56716490 41 GAAATGGACCCCAACTGCTCCTGCTCGCCTGGTAAGGGACA GAAATGGACCCCAACTGCTCCTGCTCACCTGGTAAGGGACA < 41bp 1 0.219770260679584 1 0.181626915931702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MT1X ENSG00000187193 CDS Human protein_coding chr16:56716470 chr16:56716476 synonymous SNV . 0 27 hm5C_associated_SNPs_26618 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_27144 DeepMRMD:1;iRNA_m5C:0.999536712157816 27145 chr2 171818224 171818224 1 + C G LUAD 171818210 + 171818190 171818230 41 TTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC TTATTGCCACCACAAGTAAACCAGTCCCTCACTTGTGTGCC < 41bp 1 0.206423917692833 1 0.101730972528458 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818210 chr2:171818224 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_26619 0 0 1 0 2 Ribosome 1 0.501429105766345 1 0.99714178846731 hm5C_site_27145 DeepMRMD:1;iRNA_m5C:0.99714178846731 27146 chr16 599442 599442 1 + G A LUAD 599450 + 599430 599470 41 ATGCTGCCCTGTGATGAGGCCGGCTGCCTCCTCTTCTCACA ATGCTGCCCTGTAATGAGGCCGGCTGCCTCCTCTTCTCACA < 41bp 1 0.258310099166434 1 0.148414731025696 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:599450 chr16:599442 nonsynonymous SNV 0.789 4 13 hm5C_associated_SNPs_26620 0 0 1 0 1 chromatin 1 0.500231643921066 1 0.999536712157869 hm5C_site_27146 DeepMRMD:1;iRNA_m5C:0.999536712157869 27147 chr1 16785432 16785432 1 + C T LUAD 16785430 + 16785410 16785450 41 GACTTCTGGGAAGGCGCTCCCTCATCTGGGCCAAAGGAAGG GACTTCTGGGAAGGCGCTCCCTTATCTGGGCCAAAGGAAGG < 41bp 1 0.290674178231323 1 0.0513639748096466 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16785430 chr1:16785432 nonsynonymous SNV 0.083 1 23 hm5C_associated_SNPs_26621 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27147 DeepMRMD:1;iRNA_m5C:0.999536712157815 27148 chr8 17406315 17406315 1 + A G LUAD 17406301 + 17406281 17406321 41 GTTTGTGAAAGGAAATGTGGCAAACTGGAAGATTAGTGAAG GTTTGTGAAAGGAAATGTGGCAAACTGGAAGATTGGTGAAG < 41bp 1 0.209283026889157 1 0.133090198040009 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17406301 chr8:17406315 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_26622 0 0 1 0 1 Ribosome 1 0.50023164313587 1 0.999536713728259 hm5C_site_27148 DeepMRMD:1;iRNA_m5C:0.999536713728259 27149 chr10 12123626 12123626 1 + G C LUAD 12123616 + 12123596 12123636 41 CAGACACTGCAGGGACCCTTCCACACGGCAGGTATGGCTTC CAGACACTGCAGGGACCCTTCCACACGGCACGTATGGCTTC < 41bp 1 0.55906300194802 1 0.331889390945435 experiment 0.88187399610396 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12123616 chr10:12123626 nonsynonymous SNV 0.814 4 31 hm5C_associated_SNPs_26623 0 0 0 0 1 Endoplasmic reticulum 1 0.500231470405663 1 0.999537059188675 hm5C_site_27149 DeepMRMD:1;iRNA_m5C:0.999537059188675 27150 chr10 12123626 12123626 1 + G C LUAD 12123624 + 12123604 12123644 41 GCAGGGACCCTTCCACACGGCAGGTATGGCTTCTGCACAGC GCAGGGACCCTTCCACACGGCACGTATGGCTTCTGCACAGC < 41bp 1 0.652459422774192 1 0.0517101585865021 experiment 0.695081154451616 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12123624 chr10:12123626 nonsynonymous SNV 0.814 4 23 hm5C_associated_SNPs_26624 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164219837 1 0.999536715603259 hm5C_site_27150 DeepMRMD:1;iRNA_m5C:0.999536715603259 27151 chr2 128178938 128178938 1 + C T LUAD 128178922 + 128178902 128178942 41 GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTCCGTC GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTTCGTC < 41bp 1 0.051195368831837 1 0.0683390498161316 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128178922 chr2:128178938 nonsynonymous SNV . 0 37 hm5C_associated_SNPs_26625 0 0 1 0 3 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27151 DeepMRMD:1;iRNA_m5C:0.999536712157815 27152 chr6 145157479 145157479 1 + C T LUAD 145157491 + 145157471 145157511 41 CAGCACCTCCGAAGGGGGCTCCCTGTCGGTTCACCGCCAGA CAGCACCTTCGAAGGGGGCTCCCTGTCGGTTCACCGCCAGA < 41bp 1 0.0610696476612614 1 0.139572560787201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145157491 chr6:145157479 synonymous SNV . 0 9 hm5C_associated_SNPs_26626 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27152 DeepMRMD:1;iRNA_m5C:0.999536712157815 27153 chr8 17406291 17406291 1 + G A LUAD 17406301 + 17406281 17406321 41 GTTTGTGAAAGGAAATGTGGCAAACTGGAAGATTAGTGAAG GTTTGTGAAAAGAAATGTGGCAAACTGGAAGATTAGTGAAG < 41bp 1 0.167606645288205 1 0.102503210306168 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17406301 chr8:17406291 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_26627 0 0 1 0 1 Ribosome 1 0.500231643927513 1 0.999536712144973 hm5C_site_27153 DeepMRMD:1;iRNA_m5C:0.999536712144973 27154 chr3 20019888 20019888 1 + G T LUAD 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATTGCAATAGGTAAGATTAATATCT < 41bp 1 0.230241934939371 1 0.197461932897568 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019888 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_26628 0 0 0 2 2 Ribosome 1 0.500231643877925 1 0.999536712244151 hm5C_site_27154 DeepMRMD:1;iRNA_m5C:0.999536712244151 27155 chr10 105203041 105203041 1 + A T LUAD 105203022 + 105203002 105203042 41 AGGTCTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCAAA AGGTCTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCATA < 41bp 1 0.269485688775103 1 0.825788736343384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203022 chr10:105203041 nonsynonymous SNV 0.970 3 40 hm5C_associated_SNPs_26629 0 0 1 0 1 Nucleus 1 0.500231643938424 0.348422527313232 0.999536712123152 hm5C_site_27155 DeepMRMD:0.348422527313232;iRNA_m5C:0.999536712123152 27156 chr16 12618639 12618639 1 + C T LUAD 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC TCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.172717131588834 1 0.277452111244202 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618639 synonymous SNV . 0 1 hm5C_associated_SNPs_26630 0 0 0 0 2 Nucleus 1 0.500231643921025 1 0.999536712157949 hm5C_site_27156 DeepMRMD:1;iRNA_m5C:0.999536712157949 27157 chr3 196533538 196533538 1 + G T LUAD 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGCCCCGCTACCGGATCATACGAA < 41bp 1 0.434258432844148 1 0.525960206985474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533538 nonsynonymous SNV 0.986 3 26 hm5C_associated_SNPs_26631 0 0 1 0 2 Ribosome 1 0.500231643921092 0.948079586029052 0.999536712157815 hm5C_site_27157 DeepMRMD:0.948079586029052;iRNA_m5C:0.999536712157815 27158 chr9 15444672 15444672 1 + G A LUAD 15444686 + 15444666 15444706 41 CTATCTGTGAATATCTTGTACCCTGTTATATTTCATAAGGT CTATCTATGAATATCTTGTACCCTGTTATATTTCATAAGGT < 41bp 1 0.0978050011959939 1 0.047975480556488 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15444686 chr9:15444672 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_26632 0 0 1 2 2 Ribosome 1 0.500240798377284 1 0.999518403245431 hm5C_site_27158 DeepMRMD:1;iRNA_m5C:0.999518403245431 27159 chr5 169018131 169018131 1 + G A LUAD 169018123 + 169018103 169018143 41 CGAATGTTAGAAAGTTTGAGCTGCGAATGTGAAGCTATTAA CGAATGTTAGAAAGTTTGAGCTGCGAATATGAAGCTATTAA < 41bp 1 0.416861660159583 1 0.120415240526199 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169018123 chr5:169018131 nonsynonymous SNV 0.995 1 29 hm5C_associated_SNPs_26633 0 0 1 0 2 chromatin 1 0.500265851563091 1 0.999468296873819 hm5C_site_27159 DeepMRMD:1;iRNA_m5C:0.999468296873819 27160 chr10 75519922 75519922 1 + G T LUAD 75519908 + 75519888 75519928 41 GATCCAGACTCCCCAGCGATCTGCCCCATCACAGGCCTCCA GATCCAGACTCCCCAGCGATCTGCCCCATCACAGTCCTCCA < 41bp 1 0.452696287252437 1 0.469302088022232 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75519908 chr10:75519922 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_26634 0 0 1 0 0 Nucleus 1 0.50023184775597 1 0.999536304488061 hm5C_site_27160 DeepMRMD:1;iRNA_m5C:0.999536304488061 27161 chr5 137754725 137754725 1 + A G LUAD 137754741 + 137754721 137754761 41 CTCCAGAGCCGGACCATGTTCCCAAAGCCGACAGCACTGAC CTCCGGAGCCGGACCATGTTCCCAAAGCCGACAGCACTGAC < 41bp 1 0.485765381045597 1 0.18029910326004 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137754741 chr5:137754725 synonymous SNV . 0 5 hm5C_associated_SNPs_26635 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27161 DeepMRMD:1;iRNA_m5C:0.999536712157815 27162 chr5 82834807 82834807 1 + C A LUAD 82834788 + 82834768 82834808 41 CATATCTGACTCAGAAGGACCCAGTAGCACCATGGTCAGCA CATATCTGACTCAGAAGGACCCAGTAGCACCATGGTCAGAA < 41bp 1 0.0687178017894855 1 0.116916120052338 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82834788 chr5:82834807 nonsynonymous SNV 0.201 2 40 hm5C_associated_SNPs_26636 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27162 DeepMRMD:1;iRNA_m5C:0.999536712157815 27163 chr6 26597220 26597220 1 + G T LUAD 26597203 + 26597183 26597223 41 GGCCGTCGTGCCGCTCGTGTCAGTCAACATGGAGGCAGAGG GGCCGTCGTGCCGCTCGTGTCAGTCAACATGGAGGCATAGG < 41bp 1 0.362998437091729 1 0.153044879436493 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABT1 ENSG00000146109 CDS Human protein_coding chr6:26597203 chr6:26597220 stopgain 0.005 0 38 hm5C_associated_SNPs_26637 0 0 1 0 0 Ribosome 1 0.500249679675308 1 0.999500640649384 hm5C_site_27163 DeepMRMD:1;iRNA_m5C:0.999500640649384 27164 chr1 12317054 12317054 1 + G A LUAD 12317053 + 12317033 12317073 41 CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTC CTAATACAAAGCTGCAATACCAGCAAATCATGGAATTCCTC < 41bp 1 0.215357275037349 1 0.376029759645462 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12317053 chr1:12317054 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_26638 0 0 1 0 2 Nucleus 1 0.500231643961068 1 0.999536712077863 hm5C_site_27164 DeepMRMD:1;iRNA_m5C:0.999536712077863 27165 chr11 25004823 25004823 1 + C T LUAD 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCCAGATGTAGCGGCCAAAAGCAAGGTACCTA < 41bp 1 0.405859868352153 1 0.320751368999481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004823 nonsynonymous SNV 0.002 0 18 hm5C_associated_SNPs_26639 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27165 DeepMRMD:1;iRNA_m5C:0.999536712157815 27166 chr7 100275138 100275138 1 + G A LUAD 100275144 + 100275124 100275164 41 CACGCCATCCCGCTGCGCTCCTCCTGGGTAATGACCTGTGC CACGCCATCCCGCTACGCTCCTCCTGGGTAATGACCTGTGC < 41bp 1 0.6012237472603 1 0.41372150182724 experiment 0.7975525054794 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275144 chr7:100275138 synonymous SNV . 0 15 hm5C_associated_SNPs_26640 0 0 1 0 1 Cytosol 1 0.500231643935236 1 0.999536712129527 hm5C_site_27166 DeepMRMD:1;iRNA_m5C:0.999536712129527 27167 chr5 14498735 14498735 1 + G T LUAD 14498746 + 14498726 14498766 41 CGTCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG CGTCGGCCATCCTGAGGGTCCTAGGTAAGCACCGTGCAACG < 41bp 1 0.395673927008759 1 0.233690232038498 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14498746 chr5:14498735 nonsynonymous SNV 0.933 3 10 hm5C_associated_SNPs_26641 0 0 1 0 1 Nucleus 1 0.50023164392106 1 0.999536712157879 hm5C_site_27167 DeepMRMD:1;iRNA_m5C:0.999536712157879 27168 chr1 109773541 109773541 1 + A T LUAD 109773540 + 109773520 109773560 41 GAGGATTTGGGGTGATTGTACAGTCAGGAAGAAGTACTCTC GAGGATTTGGGGTGATTGTACTGTCAGGAAGAAGTACTCTC < 41bp 1 0.280871524803707 1 0.0609756708145142 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SARS ENSG00000031698 CDS Human protein_coding chr1:109773540 chr1:109773541 synonymous SNV . 0 22 hm5C_associated_SNPs_26642 0 0 1 0 1 Ribosome 1 0.500231643921061 1 0.999536712157878 hm5C_site_27168 DeepMRMD:1;iRNA_m5C:0.999536712157878 27169 chr19 30935217 30935217 1 + G T LUAD 30935230 + 30935210 30935250 41 CGTTCCCGACGTGGCCCACCCGGTGCCCTCGCCCAAGCCTG CGTTCCCTACGTGGCCCACCCGGTGCCCTCGCCCAAGCCTG < 41bp 1 0.620623700894257 1 0.462163925170898 experiment 0.758752598211485 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935230 chr19:30935217 nonsynonymous SNV 0.951 4 8 hm5C_associated_SNPs_26643 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27169 DeepMRMD:1;iRNA_m5C:0.999536712157815 27170 chr20 62373320 62373320 1 + G A LUAD 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GACCTGGCCAGTAACCAGTCCTCTCCGTCCACCCCGTCACC < 41bp 1 0.0602799140276986 1 0.0295876860618591 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373320 nonsynonymous SNV 0.970 1 13 hm5C_associated_SNPs_26644 0 0 1 0 2 Cytosol 1 0.500231643921098 1 0.999536712157804 hm5C_site_27170 DeepMRMD:1;iRNA_m5C:0.999536712157804 27171 chr17 4621224 4621224 1 + C T LUAD 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCTGGAGAAACCCGGCCCCCAGCCTTCAGCCG < 41bp 1 0.518114089189132 1 0.418772280216217 experiment 0.963771821621736 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621224 nonsynonymous SNV 0.589 4 12 hm5C_associated_SNPs_26645 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27171 DeepMRMD:1;iRNA_m5C:0.999536712157815 27172 chr19 757466 757466 1 + G A LUAD 757482 + 757462 757502 41 CCCCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGG CCCCAGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGG < 41bp 1 0.304908390723099 1 0.046427845954895 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757482 chr19:757466 nonsynonymous SNV 0.003 0 5 hm5C_associated_SNPs_26646 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27172 DeepMRMD:1;iRNA_m5C:0.999536712157815 27173 chr19 757466 757466 1 + G A LUAD 757484 + 757464 757504 41 CCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTT CCAGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTT < 41bp 1 0.230088323631826 1 0.155304968357086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757484 chr19:757466 nonsynonymous SNV 0.003 0 3 hm5C_associated_SNPs_26647 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27173 DeepMRMD:1;iRNA_m5C:0.999536712157815 27174 chr19 757466 757466 1 + G A LUAD 757485 + 757465 757505 41 CGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTG CAGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTG < 41bp 1 0.148522944077573 1 0.363250851631165 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757485 chr19:757466 nonsynonymous SNV 0.003 0 2 hm5C_associated_SNPs_26648 0 0 0 0 0 nucleus 1 0.500231644738169 1 0.999536710523663 hm5C_site_27174 DeepMRMD:1;iRNA_m5C:0.999536710523663 27175 chr19 757466 757466 1 + G A LUAD 757486 + 757466 757506 41 GGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTGA AGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTGA < 41bp 1 0.259596814162741 1 0.408649057149887 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757486 chr19:757466 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26649 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27175 DeepMRMD:1;iRNA_m5C:0.999536712157815 27176 chr2 46611667 46611667 1 + C T LUAD 46611654 + 46611634 46611674 41 AACCCTTCTTTCAGGCATGGCAAGCCGGCTGCTCGGGCCCT AACCCTTCTTTCAGGCATGGCAAGCCGGCTGCTTGGGCCCT < 41bp 1 0.185057077002805 1 0.375244349241257 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46611654 chr2:46611667 synonymous SNV . 0 34 hm5C_associated_SNPs_26650 0 0 1 0 1 Cytosol 1 0.500231643826112 1 0.999536712347775 hm5C_site_27176 DeepMRMD:1;iRNA_m5C:0.999536712347775 27177 chr19 49404089 49404089 1 + G C LUAD 49404083 + 49404063 49404103 41 TCTGGGCCCCGAGGAACCCTCCTTCTGTTGCCGCTGCTGCT TCTGGGCCCCGAGGAACCCTCCTTCTCTTGCCGCTGCTGCT < 41bp 1 0.0244724802257403 1 0.103273451328278 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49404083 chr19:49404089 synonymous SNV . 0 27 hm5C_associated_SNPs_26651 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27177 DeepMRMD:1;iRNA_m5C:0.999536712157815 27178 chr12 58109591 58109591 1 + G T LUAD 58109596 + 58109576 58109616 41 GACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTA GACTACATCGATCGCTTGGACGAGCCCTTGTCCTGCTCTTA < 41bp 1 0.447834067871439 1 0.666000425815582 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58109596 chr12:58109591 nonsynonymous SNV 0.577 3 16 hm5C_associated_SNPs_26652 0 0 1 0 1 Nucleus 1 0.500231643886301 0.667999148368836 0.999536712227399 hm5C_site_27178 DeepMRMD:0.667999148368836;iRNA_m5C:0.999536712227399 27179 chr12 58109591 58109591 1 + G T LUAD 58109602 + 58109582 58109622 41 ATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT ATCGATCGCTTGGACGAGCCCTTGTCCTGCTCTTATGTGCT < 41bp 1 0.376814376599115 1 0.0581540167331696 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OS9 ENSG00000135506 CDS Human protein_coding chr12:58109602 chr12:58109591 nonsynonymous SNV 0.577 3 10 hm5C_associated_SNPs_26653 0 0 1 0 1 Nucleus 1 0.500231630630246 1 0.999536738739508 hm5C_site_27179 DeepMRMD:1;iRNA_m5C:0.999536738739508 27180 chrX 135126719 135126719 1 + G T LUAD 135126705 + 135126685 135126725 41 TTCTACTGTGAACACTGAACCGGCCACATCCAGCGCCCCAA TTCTACTGTGAACACTGAACCGGCCACATCCAGCTCCCCAA < 41bp 1 0.462023126696907 1 0.72007292509079 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135126705 chrX:135126719 nonsynonymous SNV 0.075 0 35 hm5C_associated_SNPs_26654 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.55985414981842 0.999536712157815 hm5C_site_27180 DeepMRMD:0.55985414981842;iRNA_m5C:0.999536712157815 27181 chr1 62241001 62241001 1 + G T LUAD 62241004 + 62240984 62241024 41 TTCCTGGAGGATTAGCAGATCGAGTAAGTCAACCTTCCTTG TTCCTGGAGGATTAGCATATCGAGTAAGTCAACCTTCCTTG < 41bp 1 0.468216310195008 1 0.331790894269943 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PATJ ENSG00000132849 CDS Human protein_coding chr1:62241004 chr1:62241001 nonsynonymous SNV 0.998 4 18 hm5C_associated_SNPs_26656 0 0 1 0 1 Nucleus 1 0.500231644915518 1 0.999536710168965 hm5C_site_27181 DeepMRMD:1;iRNA_m5C:0.999536710168965 27182 chr11 8706410 8706410 1 + G T LUAD 8706393 + 8706373 8706413 41 ACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGGCTG ACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGTCTG < 41bp 1 0.63028920329709 1 0.752108812332153 experiment 0.739421593405819 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL27A ENSG00000166441 CDS Human protein_coding chr11:8706393 chr11:8706410 nonsynonymous SNV 0.755 0 38 hm5C_associated_SNPs_26657 0 0 1 0 1 Cytosol 1 0.500231643396187 0.495782375335694 0.999536713207626 hm5C_site_27182 DeepMRMD:0.495782375335694;iRNA_m5C:0.999536713207626 27183 chr13 113907476 113907476 1 + G T LUAD 113907465 + 113907445 113907485 41 GTGGTCGAAAACTTCAGTGGCAAACTACTTTGGGACATGCT GTGGTCGAAAACTTCAGTGGCAAACTACTTTTGGACATGCT < 41bp 1 0.0679949702704002 1 0.087164431810379 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUL4A ENSG00000139842 CDS Human protein_coding chr13:113907465 chr13:113907476 nonsynonymous SNV 0.373 2 32 hm5C_associated_SNPs_26658 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_27183 DeepMRMD:1;iRNA_m5C:0.999536712157816 27184 chr22 41742176 41742176 1 + G T LUAD 41742194 + 41742174 41742214 41 CTGAAGGAGCACCAGGGCATCTTCACCTTCCTCTGCGAGGT CTTAAGGAGCACCAGGGCATCTTCACCTTCCTCTGCGAGGT < 41bp 1 0.381822328156786 1 0.148411124944687 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41742194 chr22:41742176 synonymous SNV . 0 3 hm5C_associated_SNPs_26659 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643937822 1 0.999536712124357 hm5C_site_27184 DeepMRMD:1;iRNA_m5C:0.999536712124357 27185 chr2 238671518 238671518 1 + G C LUAD 238671535 + 238671515 238671555 41 CAGGTTGAGTCAAATGAGGTCATGGGTGCACCAGATGACAG CAGCTTGAGTCAAATGAGGTCATGGGTGCACCAGATGACAG < 41bp 1 0.400602618041346 1 0.593807935714722 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238671535 chr2:238671518 nonsynonymous SNV 0.002 1 4 hm5C_associated_SNPs_26660 0 0 1 0 0 Ribosome 1 0.50023160899653 0.812384128570556 0.99953678200694 hm5C_site_27185 DeepMRMD:0.812384128570556;iRNA_m5C:0.99953678200694 27186 chrX 2632486 2632486 1 + G T LUAD 2632489 + 2632469 2632509 41 GTTTCGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT GTTTCGATTTATCCGATTCCCTTCCTGGTGAGTATCAACAT < 41bp 1 0.129721307213927 1 0.0568150877952576 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2632489 chrX:2632486 nonsynonymous SNV 0.108 3 18 hm5C_associated_SNPs_26661 0 0 1 0 2 Endoplasmic reticulum 1 0.500231635942698 1 0.999536728114604 hm5C_site_27186 DeepMRMD:1;iRNA_m5C:0.999536728114604 27187 chr20 61291841 61291841 1 + T C LUAD 61291833 + 61291813 61291853 41 GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT GGCTTCCTGGGCTCTGGGGCCGCTGCTTCCTTCACCGCCGT < 41bp 1 0.445823850351167 1 0.266342401504517 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291833 chr20:61291841 nonsynonymous SNV 0.006 1 29 hm5C_associated_SNPs_26663 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643896422 1 0.999536712207155 hm5C_site_27187 DeepMRMD:1;iRNA_m5C:0.999536712207155 27188 chr16 5127932 5127932 1 + C T LUAD 5127916 + 5127896 5127936 41 ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCCGCAT ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCTGCAT < 41bp 1 0.148779700481095 1 0.210621058940887 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5127916 chr16:5127932 synonymous SNV . 0 37 hm5C_associated_SNPs_26664 0 0 1 0 2 Ribosome 1 0.50023189235192 1 0.999536215296159 hm5C_site_27188 DeepMRMD:1;iRNA_m5C:0.999536215296159 27189 chr2 203421050 203421050 1 + G T LUAD 203421065 + 203421045 203421085 41 GTCTTGTGGACAGGAGGGAACGGCCACTAGAAGGTGGCCGA GTCTTTTGGACAGGAGGGAACGGCCACTAGAAGGTGGCCGA < 41bp 1 0.289792709183324 1 0.485184192657471 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BMPR2 ENSG00000204217 CDS Human protein_coding chr2:203421065 chr2:203421050 nonsynonymous SNV 0.989 1 6 hm5C_associated_SNPs_26665 0 0 1 0 0 Ribosome 1 0.500231643911479 1 0.999536712177041 hm5C_site_27189 DeepMRMD:1;iRNA_m5C:0.999536712177041 27190 chr22 29445768 29445768 1 + C G LUAD 29445774 + 29445754 29445794 41 TTCAGCTGCTATCACGGCCACCGCTCGGTGTGCAGTGGCTA TTCAGCTGCTATCAGGGCCACCGCTCGGTGTGCAGTGGCTA < 41bp 1 0.0870540889467452 1 0.0809352099895477 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29445774 chr22:29445768 nonsynonymous SNV 0.994 4 15 hm5C_associated_SNPs_26666 0 0 0 0 0 Ribosome 1 0.500257023210408 1 0.999485953579184 hm5C_site_27190 DeepMRMD:1;iRNA_m5C:0.999485953579184 27191 chr6 107100092 107100092 1 + G T LUAD 107100110 + 107100090 107100130 41 AGGATCAGATACAGGAGGATCGACCAGAAATCCTGCTGCCC AGTATCAGATACAGGAGGATCGACCAGAAATCCTGCTGCCC < 41bp 1 0.408882019524897 1 0.250573366880417 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107100110 chr6:107100092 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_26667 0 0 1 0 1 Ribosome 1 0.500231643921053 1 0.999536712157893 hm5C_site_27191 DeepMRMD:1;iRNA_m5C:0.999536712157893 27192 chrX 73047050 73047050 1 + C A LUAD 73047047 - 73047027 73047067 41 TCAGAGCAAGCATTGTGGAGCGGTTCCTTATGCCAGGCTGC TCAGAGCAAGCATTGTGTAGCGGTTCCTTATGCCAGGCTGC < 41bp 1 0.147054369791922 1 0.18011811375618 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047047 chrX:73047050 . . 0 18 hm5C_associated_SNPs_26668 0 0 1 0 0 unknown 1 0.500231643923829 1 0.999536712152342 hm5C_site_27192 DeepMRMD:1;iRNA_m5C:0.999536712152342 27193 chr6 107100091 107100091 1 + G T LUAD 107100110 + 107100090 107100130 41 AGGATCAGATACAGGAGGATCGACCAGAAATCCTGCTGCCC ATGATCAGATACAGGAGGATCGACCAGAAATCCTGCTGCCC < 41bp 1 0.352730446264478 1 0.188787966966629 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107100110 chr6:107100091 stopgain 1.000 1 2 hm5C_associated_SNPs_26669 0 0 1 0 1 Ribosome 1 0.500231702699198 1 0.999536594601603 hm5C_site_27193 DeepMRMD:1;iRNA_m5C:0.999536594601603 27194 chr11 67258406 67258406 1 + G A LUAD 67258390 + 67258370 67258410 41 CTGTGGTGAGCCGAGAGCTGCAGGCCCTGGAGGCACGGATC CTGTGGTGAGCCGAGAGCTGCAGGCCCTGGAGGCACAGATC < 41bp 1 0.613016386951837 1 0.62434309720993 experiment 0.773967226096325 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AIP ENSG00000110711 CDS Human protein_coding chr11:67258390 chr11:67258406 nonsynonymous SNV 0.990 0 37 hm5C_associated_SNPs_26670 0 0 0 0 0 Ribosome 1 0.500231645332935 0.75131380558014 0.99953670933413 hm5C_site_27194 DeepMRMD:0.75131380558014;iRNA_m5C:0.99953670933413 27195 chr12 57599438 57599438 1 + G A LUAD 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACAC < 41bp 1 0.25379408871358 1 0.345259964466095 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599438 synonymous SNV . 0 40 hm5C_associated_SNPs_26672 0 0 0 0 2 Exosome 1 0.500231643665232 1 0.999536712669536 hm5C_site_27195 DeepMRMD:1;iRNA_m5C:0.999536712669536 27196 chr19 44515277 44515277 1 + A G LUAD 44515278 + 44515258 44515298 41 GAATCCACAGTGGAGAAAAACCATACAGATGTGAGGAGTGT GAATCCACAGTGGAGAAAAGCCATACAGATGTGAGGAGTGT < 41bp 1 0.252149405846013 1 0.0293356776237488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF230 ENSG00000159882 CDS Human protein_coding chr19:44515278 chr19:44515277 synonymous SNV . 0 20 hm5C_associated_SNPs_26673 0 0 1 0 0 cytosol 1 0.500231663860911 1 0.999536672278179 hm5C_site_27196 DeepMRMD:1;iRNA_m5C:0.999536672278179 27197 chr18 633357 633357 1 + G T LUAD 633344 + 633324 633364 41 AAGATGTTACCTGGGCAGGACAGAGGACTGTGTGGGGAACT AAGATGTTACCTGGGCAGGACAGAGGACTGTGTTGGGAACT < 41bp 1 0.488651585598674 1 0.454484105110168 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633344 chr18:633357 nonsynonymous SNV 0.736 3 34 hm5C_associated_SNPs_26674 0 0 0 0 2 cytosol 1 0.500231643920889 1 0.999536712158223 hm5C_site_27197 DeepMRMD:1;iRNA_m5C:0.999536712158223 27198 chr11 67815252 67815252 1 + G A LUAD 67815244 + 67815224 67815264 41 CCCCTCGGGCTGGAGTGTGGCCGCCATGGCCAACCAGTCTG CCCCTCGGGCTGGAGTGTGGCCGCCATGACCAACCAGTCTG < 41bp 1 0.285747204973697 1 0.0384877622127533 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815244 chr11:67815252 nonsynonymous SNV 0.997 1 29 hm5C_associated_SNPs_26675 0 0 0 0 1 Nucleus 1 0.500231643800471 1 0.999536712399057 hm5C_site_27198 DeepMRMD:1;iRNA_m5C:0.999536712399057 27199 chr6 147635025 147635025 1 + C A LUAD 147635039 + 147635019 147635059 41 GATATCCTATATTTGAAAATCCCTACCCTTTGAGTATACAT GATATCATATATTTGAAAATCCCTACCCTTTGAGTATACAT < 41bp 1 0.0999771231181426 1 0.18326935172081 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147635039 chr6:147635025 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_26676 0 0 1 0 1 Nucleus 1 0.50023164393094 1 0.99953671213812 hm5C_site_27199 DeepMRMD:1;iRNA_m5C:0.99953671213812 27200 chr19 44515285 44515285 1 + G A LUAD 44515278 + 44515258 44515298 41 GAATCCACAGTGGAGAAAAACCATACAGATGTGAGGAGTGT GAATCCACAGTGGAGAAAAACCATACAAATGTGAGGAGTGT < 41bp 1 0.258198280504117 1 0.0731462240219116 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF230 ENSG00000159882 CDS Human protein_coding chr19:44515278 chr19:44515285 nonsynonymous SNV 0.002 0 28 hm5C_associated_SNPs_26677 0 0 1 0 0 cytosol 1 0.500231819911034 1 0.999536360177933 hm5C_site_27200 DeepMRMD:1;iRNA_m5C:0.999536360177933 27201 chr12 132546759 132546759 1 + G A LUAD 132546776 + 132546756 132546796 41 AACGACTCAGGGTGTTCGAGCGGTCACTTCTGTGACAGCCT AACAACTCAGGGTGTTCGAGCGGTCACTTCTGTGACAGCCT < 41bp 1 0.0622973414316179 1 0.445875436067581 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546776 chr12:132546759 synonymous SNV . 0 4 hm5C_associated_SNPs_26678 0 0 1 0 0 Cytosol 1 0.50023164465624 1 0.999536710687519 hm5C_site_27201 DeepMRMD:1;iRNA_m5C:0.999536710687519 27202 chr11 113078037 113078037 1 + G T LUAD 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG GCAGAATATTGTGAATGCCACCGCCAACCTCGTCCAGTCCG < 41bp 1 0.123670318409153 1 0.133310496807098 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078037 nonsynonymous SNV 0.964 0 33 hm5C_associated_SNPs_26679 0 0 0 0 2 Ribosome 1 0.500231644874943 1 0.999536710250114 hm5C_site_27202 DeepMRMD:1;iRNA_m5C:0.999536710250114 27203 chr3 180693108 180693108 1 + T C LUAD 180693102 + 180693082 180693122 41 TTTTTCTCATCTTTAACAGTCACAGTTGCAGATTATATTTC TTTTTCTCATCTTTAACAGTCACAGTCGCAGATTATATTTC < 41bp 1 0.2039455275269 1 0.223197817802429 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180693102 chr3:180693108 synonymous SNV . 0 27 hm5C_associated_SNPs_26680 0 0 1 0 2 Exosome 1 0.500231643058863 1 0.999536713882275 hm5C_site_27203 DeepMRMD:1;iRNA_m5C:0.999536713882275 27204 chr17 37074986 37074986 1 + C T LUAD 37075006 + 37074986 37075026 41 CGGCGACACGGGGATGCTGCCGGCCAACTACGTGGAGGCCA TGGCGACACGGGGATGCTGCCGGCCAACTACGTGGAGGCCA < 41bp 1 0.651085002375117 1 0.500039875507355 experiment 0.697829995249765 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37075006 chr17:37074986 synonymous SNV . 0 1 hm5C_associated_SNPs_26681 0 0 1 0 0 Cytosol 1 0.500231643921092 0.99992024898529 0.999536712157815 hm5C_site_27204 DeepMRMD:0.99992024898529;iRNA_m5C:0.999536712157815 27205 chr7 129394889 129394889 1 + G C LUAD 129394901 + 129394881 129394921 41 ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACGG ATGTACCACACTGTGGTGACCAGCCTCGCCCAGGGCAACGG < 41bp 1 0.55496327719372 1 0.161623865365982 experiment 0.890073445612561 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394901 chr7:129394889 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_26682 0 0 1 0 1 chromatin 1 0.500231677993781 1 0.999536644012437 hm5C_site_27205 DeepMRMD:1;iRNA_m5C:0.999536644012437 27206 chr20 39795149 39795149 1 + T C LUAD 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCCGAGCACATGCTAATGCGCG < 41bp 1 0.162369804429871 1 0.298301219940186 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795149 synonymous SNV . 0 22 hm5C_associated_SNPs_26683 0 0 0 0 2 Cytosol 1 0.500231643921054 1 0.999536712157892 hm5C_site_27206 DeepMRMD:1;iRNA_m5C:0.999536712157892 27207 chr5 131607089 131607089 1 + C A LUAD 131607104 + 131607084 131607124 41 GAGCCCGTGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG GAGCCAGTGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG < 41bp 1 0.669232795116367 1 0.308423817157745 experiment 0.661534409767267 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607104 chr5:131607089 synonymous SNV . 0 6 hm5C_associated_SNPs_26684 0 0 1 0 2 chromatin 1 0.500231643920215 1 0.999536712159571 hm5C_site_27207 DeepMRMD:1;iRNA_m5C:0.999536712159571 27208 chr17 54912529 54912529 1 + C T LUAD 54912549 + 54912529 54912569 41 CACCACTGGATCCGGGGCAACGTGCCCCTGTGCAGTTACTG TACCACTGGATCCGGGGCAACGTGCCCCTGTGCAGTTACTG < 41bp 1 0.316663157126868 1 0.217803537845612 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54912549 chr17:54912529 nonsynonymous SNV 1.000 5 1 hm5C_associated_SNPs_26685 0 0 1 0 1 Ribosome 1 0.500232102175389 1 0.999535795649221 hm5C_site_27208 DeepMRMD:1;iRNA_m5C:0.999535795649221 27209 chr3 47456482 47456482 1 + C A LUAD 47456479 - 47456459 47456499 41 GGCCTTTTGTCCTCAGGGACCCCAGGGCGGGGCAGTTCCCC GGCCTTTTGTCCTCAGGTACCCCAGGGCGGGGCAGTTCCCC < 41bp 1 0.22449932473355 1 0.140099227428436 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAP ENSG00000114650 CDS Human protein_coding chr3:47456479 chr3:47456482 synonymous SNV . 0 18 hm5C_associated_SNPs_26686 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27209 DeepMRMD:1;iRNA_m5C:0.999536712157815 27210 chr6 161470184 161470184 1 + A T LUAD 161470199 + 161470179 161470219 41 CAGATATTATTAATGAAATCCTTACTTTCAAAGTCGACTAT CAGATTTTATTAATGAAATCCTTACTTTCAAAGTCGACTAT < 41bp 1 0.0623703582617717 1 0.0436903536319733 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161470199 chr6:161470184 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_26687 0 0 1 1 0 Cytosol 1 0.500231644039452 1 0.999536711921096 hm5C_site_27210 DeepMRMD:1;iRNA_m5C:0.999536711921096 27211 chr2 128867293 128867293 1 + A G LUAD 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGATACCCTTGGGGCTCTTCTACTGA < 41bp 1 0.0409666393607709 1 0.0562422871589661 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867293 nonsynonymous SNV 0.107 0 27 hm5C_associated_SNPs_26688 0 0 1 0 2 Nucleus 1 0.500231643211138 1 0.999536713577723 hm5C_site_27211 DeepMRMD:1;iRNA_m5C:0.999536713577723 27212 chr19 18266787 18266787 1 + T C LUAD 18266796 + 18266776 18266816 41 CGTGCTGGTAGTGAGCCGGGCGGCCTTGCAGGCGCTGGGCG CGTGCTGGTAGCGAGCCGGGCGGCCTTGCAGGCGCTGGGCG < 41bp 1 0.575686054826404 1 0.600918531417847 experiment 0.848627890347191 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18266796 chr19:18266787 nonsynonymous SNV 0.993 3 12 hm5C_associated_SNPs_26689 0 0 1 0 0 Cytosol 1 0.500231643921093 0.798162937164306 0.999536712157815 hm5C_site_27212 DeepMRMD:0.798162937164306;iRNA_m5C:0.999536712157815 27213 chr19 35761990 35761990 1 + A G LUAD 35762006 + 35761986 35762026 41 AAAAATTGATGGAACCAGAACACCCCGAGATGAGAGGAGAA AAAAGTTGATGGAACCAGAACACCCCGAGATGAGAGGAGAA < 41bp 1 0.138654504006609 1 0.347886055707932 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USF2 ENSG00000105698 CDS Human protein_coding chr19:35762006 chr19:35761990 nonsynonymous SNV 0.995 2 5 hm5C_associated_SNPs_26690 0 0 1 0 2 Cytosol 1 0.500231643921091 1 0.999536712157819 hm5C_site_27213 DeepMRMD:1;iRNA_m5C:0.999536712157819 27214 chr15 64966541 64966541 1 + C T LUAD 64966550 + 64966530 64966570 41 GTCCTAATTGACTGTCCCCACCCAAACTGCAACAAGAAGTA GTCCTAATTGATTGTCCCCACCCAAACTGCAACAAGAAGTA < 41bp 1 0.165988527632534 1 0.443990856409073 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF609 ENSG00000180357 CDS Human protein_coding chr15:64966550 chr15:64966541 synonymous SNV . 0 12 hm5C_associated_SNPs_26691 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921076 1 0.999536712157848 hm5C_site_27214 DeepMRMD:1;iRNA_m5C:0.999536712157848 27215 chr3 9854722 9854722 1 + A T LUAD 9854727 + 9854707 9854747 41 GATGGTCCATCGCTCAGGCCCCACCCTGCTGCCACCCCAGA GATGGTCCATCGCTCTGGCCCCACCCTGCTGCCACCCCAGA < 41bp 1 0.0821279246227912 1 0.0412717759609222 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9854727 chr3:9854722 synonymous SNV . 0 16 hm5C_associated_SNPs_26692 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_27215 DeepMRMD:1;iRNA_m5C:0.999536712157815 27216 chr12 54394171 54394171 1 + G A LUAD 54394180 + 54394160 54394200 41 GCACGTCGTGGGCGCCCGTGCCCTCTCAGTCGTCCGTGGTA GCACGTCGTGGACGCCCGTGCCCTCTCAGTCGTCCGTGGTA < 41bp 1 0.146989383424295 1 0.0312588214874268 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54394180 chr12:54394171 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_26693 0 0 1 0 0 chromatin 1 0.500231313445244 1 0.999537373109512 hm5C_site_27216 DeepMRMD:1;iRNA_m5C:0.999537373109512 27217 chr15 81295659 81295659 1 + G T LUAD 81295655 + 81295635 81295675 41 TCAGGCTTTAAGGGAGAGGTCTTCGCCCAGGACTTTACCGC TCAGGCTTTAAGGGAGAGGTCTTCTCCCAGGACTTTACCGC < 41bp 1 0.118817333139377 1 0.104428589344025 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TLNRD1 ENSG00000140406 CDS Human protein_coding chr15:81295655 chr15:81295659 synonymous SNV . 0 25 hm5C_associated_SNPs_26694 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_27217 DeepMRMD:1;iRNA_m5C:0.999536712157815 27218 chr11 8704331 8704331 1 + A T LUAD 8704345 + 8704325 8704365 41 TGGCGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGT TGGCGATGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGT < 41bp 1 0.421331183338637 1 0.374651849269867 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704345 chr11:8704331 . . 0 7 hm5C_associated_SNPs_26696 0 0 1 0 1 Cytosol 1 0.500231944969482 1 0.999536110061037 hm5C_site_27218 DeepMRMD:1;iRNA_m5C:0.999536110061037 27219 chr11 8704331 8704331 1 + A T LUAD 8704348 + 8704328 8704368 41 CGAAGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGTAGG CGATGGCCTTCCTTTTTCGTCTGGGCTGCCAACATGGTAGG < 41bp 1 0.672733928303903 1 0.186824142932892 experiment 0.654532143392193 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RPL27A ENSG00000166441 UTR5 Human protein_coding chr11:8704348 chr11:8704331 . . 0 4 hm5C_associated_SNPs_26697 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27219 DeepMRMD:1;iRNA_m5C:0.999536712157815 27220 chr11 67075183 67075183 1 + C T LUAD 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTGTGGCCTCCCAGCGCCGAGCCTGGCGGGTC < 41bp 1 0.679032439140951 1 0.774988532066345 experiment 0.641935121718097 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075183 nonsynonymous SNV 0.847 3 13 hm5C_associated_SNPs_26698 0 0 1 0 1 nucleus 1 0.500231641979823 0.45002293586731 0.999536716040355 hm5C_site_27220 DeepMRMD:0.45002293586731;iRNA_m5C:0.999536716040355 27221 chr5 5464644 5464644 1 + C G LUAD 5464638 + 5464618 5464658 41 CACTTCCTGTGCCTGGCCGACTCCCACCCTGTGCATCTGGC CACTTCCTGTGCCTGGCCGACTCCCAGCCTGTGCATCTGGC < 41bp 1 0.16420606330315 1 0.421148836612701 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ICE1 ENSG00000164151 CDS Human protein_coding chr5:5464638 chr5:5464644 nonsynonymous SNV 0.018 0 27 hm5C_associated_SNPs_26700 0 0 1 0 0 Nucleus 1 0.500231643920529 1 0.999536712158942 hm5C_site_27221 DeepMRMD:1;iRNA_m5C:0.999536712158942 27222 chr20 37580963 37580963 1 + T C LUAD 37580957 + 37580937 37580977 41 TGGGCACCCCCCACCTGGAACTGTACTTGAGTGACTCACTT TGGGCACCCCCCACCTGGAACTGTACCTGAGTGACTCACTT < 41bp 1 0.266439291511562 1 0.108684629201889 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37580957 chr20:37580963 synonymous SNV . 0 27 hm5C_associated_SNPs_26701 0 0 1 0 0 Ribosome 1 0.500231643921122 1 0.999536712157755 hm5C_site_27222 DeepMRMD:1;iRNA_m5C:0.999536712157755 27223 chr1 22336244 22336244 1 + G T LUAD 22336262 + 22336242 22336282 41 CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG CTTGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG < 41bp 1 0.337252217611961 1 0.0869799852371216 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336262 chr1:22336244 nonsynonymous SNV 0.890 3 3 hm5C_associated_SNPs_26702 0 0 0 0 0 Endoplasmic reticulum 1 0.500200099661817 1 0.999599800676367 hm5C_site_27223 DeepMRMD:1;iRNA_m5C:0.999599800676367 27224 chr1 22336244 22336244 1 + G T LUAD 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TTGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG < 41bp 1 0.651630532987176 1 0.179724395275116 experiment 0.696738934025648 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336244 nonsynonymous SNV 0.890 3 2 hm5C_associated_SNPs_26703 0 0 0 0 0 Endoplasmic reticulum 1 0.500231688467236 1 0.999536623065528 hm5C_site_27224 DeepMRMD:1;iRNA_m5C:0.999536623065528 27225 chr16 56667670 56667670 1 + C T LUAD 56667667 + 56667647 56667687 41 TCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGCCCCGTGGG TCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTGCCCCGTGGG < 41bp 1 0.133145821723167 1 0.0779502391815186 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MT1M ENSG00000205364 CDS Human protein_coding chr16:56667667 chr16:56667670 synonymous SNV . 0 24 hm5C_associated_SNPs_26704 0 0 0 1 1 exosome 1 0.500231643920908 1 0.999536712158184 hm5C_site_27225 DeepMRMD:1;iRNA_m5C:0.999536712158184 27226 chr3 16312542 16312542 1 + T C LUAD 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA CGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.237029427059967 1 0.163605570793152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312542 nonsynonymous SNV 0.003 0 1 hm5C_associated_SNPs_26705 0 0 1 20 2 Ribosome 1 0.500230388319177 1 0.999539223361646 hm5C_site_27226 DeepMRMD:1;iRNA_m5C:0.999539223361646 27227 chr5 908488 908488 1 + G T LUAD 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CTCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG < 41bp 1 0.538778764017312 1 0.347386986017227 experiment 0.922442471965377 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908488 nonsynonymous SNV 0.055 2 2 hm5C_associated_SNPs_26706 0 0 1 0 2 Ribosome 1 0.500231643921124 1 0.999536712157751 hm5C_site_27227 DeepMRMD:1;iRNA_m5C:0.999536712157751 27228 chr5 14280534 14280534 1 + C A LUAD 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCATGT < 41bp 1 0.272192834210896 1 0.12235164642334 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280534 synonymous SNV . 0 38 hm5C_associated_SNPs_26707 0 0 1 0 1 Nucleus 1 0.5002316438001 1 0.9995367123998 hm5C_site_27228 DeepMRMD:1;iRNA_m5C:0.9995367123998 27229 chrX 21874909 21874909 1 + G T LUAD 21874912 + 21874892 21874932 41 TAGGCAACGACTTGGAGGACCAGTTGGCCCTCCCGGATAGC TAGGCAACGACTTGGAGTACCAGTTGGCCCTCCCGGATAGC < 41bp 1 0.233065826489921 1 0.167521089315414 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YY2 ENSG00000230797 CDS Human protein_coding chrX:21874912 chrX:21874909 nonsynonymous SNV 0.001 2 18 hm5C_associated_SNPs_26708 0 0 0 0 0 exosome 1 0.50023164402516 1 0.999536711949679 hm5C_site_27229 DeepMRMD:1;iRNA_m5C:0.999536711949679 27230 chr19 14030640 14030640 1 + C A LUAD 14030636 + 14030616 14030656 41 CGACTGGCCACCCAGGCTTCCCCCCAATCCAGGGCCTGGAG CGACTGGCCACCCAGGCTTCCCCCAAATCCAGGGCCTGGAG < 41bp 1 0.287720591003045 1 0.0628082752227783 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14030636 chr19:14030640 nonsynonymous SNV 0.962 4 25 hm5C_associated_SNPs_26709 0 0 1 0 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_27230 DeepMRMD:1;iRNA_m5C:0.999536712157818 27231 chr4 79440603 79440603 1 + C A LUAD 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTATTTCT < 41bp 1 0.157947840970285 1 0.60049569606781 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440603 nonsynonymous SNV 0.989 3 36 hm5C_associated_SNPs_26710 0 0 1 0 1 Nucleus 1 0.500231643863536 0.79900860786438 0.999536712272927 hm5C_site_27231 DeepMRMD:0.79900860786438;iRNA_m5C:0.999536712272927 27232 chr4 79440603 79440603 1 + C A LUAD 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTATTTCTT < 41bp 1 0.390329373915371 1 0.681932866573334 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440603 nonsynonymous SNV 0.989 3 35 hm5C_associated_SNPs_26711 0 0 1 0 1 Nucleus 1 0.500231643989338 0.636134266853332 0.999536712021325 hm5C_site_27232 DeepMRMD:0.636134266853332;iRNA_m5C:0.999536712021325 27233 chr1 22336325 22336325 1 + C A LUAD 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTACG < 41bp 1 0.350129742317146 1 0.296161234378815 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336325 nonsynonymous SNV 0.111 4 39 hm5C_associated_SNPs_26713 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_27233 DeepMRMD:1;iRNA_m5C:0.999536712157815 27234 chr1 22336325 22336325 1 + C A LUAD 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCCACGGTGTTCACTCGAGTCTACGCCTTCAT < 41bp 1 0.371688890810146 1 0.0209057629108429 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336325 nonsynonymous SNV 0.111 4 32 hm5C_associated_SNPs_26714 0 0 0 0 1 Endoplasmic reticulum 1 0.500231649592855 1 0.999536700814291 hm5C_site_27234 DeepMRMD:1;iRNA_m5C:0.999536700814291 27235 chr1 22336325 22336325 1 + C A LUAD 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACGGTGTTCACTCGAGTCTACGCCTTCATCGACTGGAT < 41bp 1 0.536823985358916 1 0.0737865567207336 experiment 0.926352029282168 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336325 nonsynonymous SNV 0.111 4 23 hm5C_associated_SNPs_26716 0 0 0 0 1 Endoplasmic reticulum 1 0.500236924360617 1 0.999526151278766 hm5C_site_27235 DeepMRMD:1;iRNA_m5C:0.999526151278766 27236 chr1 22336325 22336325 1 + C A LUAD 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTCGAGTCTACGCCTTCATCGACTGGATTGA < 41bp 1 0.424345648388955 1 0.0372670888900757 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336325 nonsynonymous SNV 0.111 4 20 hm5C_associated_SNPs_26717 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_27236 DeepMRMD:1;iRNA_m5C:0.999536712157818 27237 chr1 22336325 22336325 1 + C A LUAD 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTCGAGTCTACGCCTTCATCGACTGGATTGAGGA < 41bp 1 0.41111885439271 1 0.630635976791382 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336325 nonsynonymous SNV 0.111 4 17 hm5C_associated_SNPs_26718 0 0 0 0 1 Endoplasmic reticulum 1 0.500231625849704 0.738728046417236 0.999536748300591 hm5C_site_27237 DeepMRMD:0.738728046417236;iRNA_m5C:0.999536748300591 27238 chr1 22336325 22336325 1 + C A LUAD 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTCGAGTCTACGCCTTCATCGACTGGATTGAGGAGGT < 41bp 1 0.339552306126572 1 0.110031962394714 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336325 nonsynonymous SNV 0.111 4 14 hm5C_associated_SNPs_26719 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_27238 DeepMRMD:1;iRNA_m5C:0.999536712157815 27239 chr1 22336325 22336325 1 + C A LUAD 22336335 + 22336315 22336355 41 ACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG ACTCGAGTCTACGCCTTCATCGACTGGATTGAGGAGGTGAG < 41bp 1 0.640473337122721 1 0.261810958385468 experiment 0.719053325754558 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336335 chr1:22336325 nonsynonymous SNV 0.111 4 11 hm5C_associated_SNPs_26720 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921122 1 0.999536712157756 hm5C_site_27239 DeepMRMD:1;iRNA_m5C:0.999536712157756 27240 chr17 40932968 40932968 1 + C T LUAD 40932967 + 40932947 40932987 41 CTCACCCGCTCCGGACCCCCCCGATCCTCCGGACTCCGCTG CTCACCCGCTCCGGACCCCCCTGATCCTCCGGACTCCGCTG < 41bp 1 0.497495089378615 1 0.216019123792648 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WNK4 ENSG00000126562 CDS Human protein_coding chr17:40932967 chr17:40932968 synonymous SNV . 0 22 hm5C_associated_SNPs_26721 0 0 0 0 0 chromatin 1 0.50023164392143 1 0.999536712157141 hm5C_site_27240 DeepMRMD:1;iRNA_m5C:0.999536712157141 27241 chr12 132547013 132547013 1 + A T LUAD 132547025 + 132547005 132547045 41 TCATAGCCACAGGAGTTCAGCTCCCTGGAAAAACCATCACA TCATAGCCTCAGGAGTTCAGCTCCCTGGAAAAACCATCACA < 41bp 1 0.122476546522477 1 0.279219061136246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EP400 ENSG00000183495 CDS Human protein_coding chr12:132547025 chr12:132547013 nonsynonymous SNV 0.405 4 9 hm5C_associated_SNPs_26722 0 0 0 0 0 Cytosol 1 0.500231640138896 1 0.999536719722207 hm5C_site_27241 DeepMRMD:1;iRNA_m5C:0.999536719722207 27242 chr10 43971253 43971253 1 + A G LUAD 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCCGTACGGAGACATGATGCTGG < 41bp 1 0.428061235051805 1 0.238180100917816 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971253 nonsynonymous SNV . 0 26 hm5C_associated_SNPs_26723 0 0 0 0 2 exosome 1 0.500231645711841 1 0.999536708576319 hm5C_site_27242 DeepMRMD:1;iRNA_m5C:0.999536708576319 27243 chr4 123748452 123748452 1 + G T LUAD 123748458 + 123748438 123748478 41 GGGGGCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGA GGGGGCTTCTTCCTTCGCATCCACCCCGACGGCCGAGTTGA < 41bp 1 0.14671908260317 1 0.0406529307365417 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748458 chr4:123748452 synonymous SNV . 0 15 hm5C_associated_SNPs_26724 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_27243 DeepMRMD:1;iRNA_m5C:0.999536712157815 27244 chr5 38885506 38885506 1 + G A LUAD 38885507 + 38885487 38885527 41 CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG CCGAGGACTTCAAGACTTTACACTGTACTTGGGATCCTGGG < 41bp 1 0.424250034070679 1 0.0830346643924713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSMR ENSG00000145623 CDS Human protein_coding chr5:38885507 chr5:38885506 synonymous SNV . 0 20 hm5C_associated_SNPs_26726 0 0 1 0 2 Nucleus 1 0.500231643921094 1 0.999536712157813 hm5C_site_27244 DeepMRMD:1;iRNA_m5C:0.999536712157813 27245 chr11 64054308 64054308 1 + C T LUAD 64054320 + 64054300 64054340 41 CCCGTCTGCCTGCAGTTCTTCACCTTGACGCTTATGAACCT CCCGTCTGTCTGCAGTTCTTCACCTTGACGCTTATGAACCT < 41bp 1 0.332917577113295 1 0.303435325622559 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPR137 ENSG00000173264 CDS Human protein_coding chr11:64054320 chr11:64054308 synonymous SNV . 0 9 hm5C_associated_SNPs_26727 0 0 1 0 1 Cytosol 1 0.500231765660705 1 0.999536468678589 hm5C_site_27245 DeepMRMD:1;iRNA_m5C:0.999536468678589 27246 chr5 179150667 179150667 1 + G A LUAD 179150661 + 179150641 179150681 41 AGCCCTGTCTTGTTTTTCAGCCAGGCGTTGTGGGGCAGATG AGCCCTGTCTTGTTTTTCAGCCAGGCATTGTGGGGCAGATG < 41bp 1 0.422603036705362 1 0.388245314359665 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150661 chr5:179150667 nonsynonymous SNV 0.019 1 27 hm5C_associated_SNPs_26728 0 0 1 0 1 Nucleus 1 0.500231643903168 1 0.999536712193663 hm5C_site_27246 DeepMRMD:1;iRNA_m5C:0.999536712193663 27247 chr5 179150667 179150667 1 + G A LUAD 179150666 + 179150646 179150686 41 TGTCTTGTTTTTCAGCCAGGCGTTGTGGGGCAGATGATCGA TGTCTTGTTTTTCAGCCAGGCATTGTGGGGCAGATGATCGA < 41bp 1 0.207776453771208 1 0.13556444644928 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179150666 chr5:179150667 nonsynonymous SNV 0.019 1 22 hm5C_associated_SNPs_26729 0 0 1 0 1 Nucleus 1 0.500231636443463 1 0.999536727113074 hm5C_site_27247 DeepMRMD:1;iRNA_m5C:0.999536727113074 27248 chr5 179150667 179150667 1 + G A LUAD 179150676 + 179150656 179150696 41 TTCAGCCAGGCGTTGTGGGGCAGATGATCGAGGCAGCTGAA TTCAGCCAGGCATTGTGGGGCAGATGATCGAGGCAGCTGAA < 41bp 1 0.404547419504536 1 0.368180334568024 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179150676 chr5:179150667 nonsynonymous SNV 0.019 1 12 hm5C_associated_SNPs_26730 0 0 1 0 1 Nucleus 1 0.500231716703802 1 0.999536566592395 hm5C_site_27248 DeepMRMD:1;iRNA_m5C:0.999536566592395 27249 chr1 2419131 2419131 1 + C T LUAD 2419119 + 2419099 2419139 41 AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACAAATA AAGATCCTCTTCAAAGACGTCATTGAAACCATTAACAAATA < 41bp 1 0.034101157065653 1 0.0523776412010193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2419119 chr1:2419131 synonymous SNV . 0 33 hm5C_associated_SNPs_26731 0 0 0 0 2 nucleus 1 0.500231643374595 1 0.99953671325081 hm5C_site_27249 DeepMRMD:1;iRNA_m5C:0.99953671325081 27250 chr11 65386199 65386199 1 + G A LUAD 65386204 + 65386184 65386224 41 TCCTGCTACTCCCCTGAGAGCTCCCGGGGTGCAGCAGGGGG TCCTGCTACTCCCCTAAGAGCTCCCGGGGTGCAGCAGGGGG < 41bp 1 0.233841067208605 1 0.335712313652039 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65386204 chr11:65386199 nonsynonymous SNV 0.994 1 16 hm5C_associated_SNPs_26732 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27250 DeepMRMD:1;iRNA_m5C:0.999536712157815 27251 chr1 164789339 164789339 1 + C G LUAD 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTGTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA < 41bp 1 0.643372741707257 1 0.170636415481567 experiment 0.713254516585487 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789339 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_26733 0 0 0 0 2 Ribosome 1 0.500231643913476 1 0.999536712173048 hm5C_site_27251 DeepMRMD:1;iRNA_m5C:0.999536712173048 27252 chr8 22065020 22065020 1 + C T LUAD 22065011 + 22064991 22065031 41 CGGTCCAGCGAAAGGGCTTCCAGGCCTCCCACGCCACAGGT CGGTCCAGCGAAAGGGCTTCCAGGCCTCCTACGCCACAGGT < 41bp 1 0.50387624611678 1 0.758338272571564 experiment 0.992247507766441 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22065011 chr8:22065020 nonsynonymous SNV 0.346 0 30 hm5C_associated_SNPs_26735 0 0 0 0 1 Endoplasmic reticulum 1 0.500231624062465 0.483323454856872 0.999536751875071 hm5C_site_27252 DeepMRMD:0.483323454856872;iRNA_m5C:0.999536751875071 27253 chr17 7838353 7838353 1 + C T LUAD 7838362 + 7838342 7838382 41 CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC CAGCCCAAGCCTTGGAGGAGCTGTTTCCCCGCTACACCAGC < 41bp 1 0.177691708355985 1 0.118254870176315 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7838362 chr17:7838353 synonymous SNV . 0 12 hm5C_associated_SNPs_26736 0 0 1 0 1 Nucleus 1 0.500231643235006 1 0.999536713529988 hm5C_site_27253 DeepMRMD:1;iRNA_m5C:0.999536713529988 27254 chr17 37676281 37676281 1 + A G LUAD 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAAGCGGTGCACAGCTGAGCAGACCCTACA < 41bp 1 0.180701581783849 1 0.130459606647491 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676281 synonymous SNV . 0 30 hm5C_associated_SNPs_26737 0 0 1 0 1 Nucleus 1 0.500231643932739 1 0.999536712134522 hm5C_site_27254 DeepMRMD:1;iRNA_m5C:0.999536712134522 27255 chr5 149751720 149751720 1 + A G LUAD 149751738 + 149751718 149751758 41 CAAGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT CAGGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT < 41bp 1 0.339947266026397 1 0.667501270771027 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751738 chr5:149751720 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_26738 0 0 1 0 1 Nucleus 1 0.500231500956498 0.664997458457946 0.999536998087003 hm5C_site_27255 DeepMRMD:0.664997458457946;iRNA_m5C:0.999536998087003 27256 chr3 38287626 38287626 1 + C T LUAD 38287619 + 38287599 38287639 41 CTCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTCAGCC CTCCAAGTTCCAGAACAGATCTCTGCTTATCTACCTCAGCC < 41bp 1 0.443228624159659 1 0.084006279706955 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38287619 chr3:38287626 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_26739 0 0 1 0 2 Ribosome 1 0.500231643914591 1 0.999536712170819 hm5C_site_27256 DeepMRMD:1;iRNA_m5C:0.999536712170819 27257 chr17 74554932 74554932 1 + C G LUAD 74554936 + 74554916 74554956 41 TCTTTTGTGAGGAGGTCTGACTTGCTGAGGCTCAGCTGTTT TCTTTTGTGAGGAGGTGTGACTTGCTGAGGCTCAGCTGTTT < 41bp 1 0.221406179983741 1 0.0309834182262421 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1C ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74554936 chr17:74554932 . . 0 17 hm5C_associated_SNPs_26740 0 0 1 0 0 unknown 1 0.500224876720087 1 0.999550246559826 hm5C_site_27257 DeepMRMD:1;iRNA_m5C:0.999550246559826 27258 chr17 74554932 74554932 1 + C G LUAD 74554946 + 74554926 74554966 41 GGAGGTCTGACTTGCTGAGGCTCAGCTGTTTAATACAAATC GGAGGTGTGACTTGCTGAGGCTCAGCTGTTTAATACAAATC < 41bp 1 0.290486358632068 1 0.147736668586731 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD1C ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74554946 chr17:74554932 . . 0 7 hm5C_associated_SNPs_26741 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157817 hm5C_site_27258 DeepMRMD:1;iRNA_m5C:0.999536712157817 27259 chr17 74554932 74554932 1 + C G LUAD 74554948 + 74554928 74554968 41 AGGTCTGACTTGCTGAGGCTCAGCTGTTTAATACAAATCTG AGGTGTGACTTGCTGAGGCTCAGCTGTTTAATACAAATCTG < 41bp 1 0.4397954668475 1 0.247583836317062 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD1C ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74554948 chr17:74554932 . . 0 5 hm5C_associated_SNPs_26742 0 0 1 0 0 unknown 1 0.50023164418475 1 0.9995367116305 hm5C_site_27259 DeepMRMD:1;iRNA_m5C:0.9995367116305 27260 chr19 10812882 10812882 1 + G A LUAD 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATAAGA < 41bp 1 0.184304520908192 1 0.086523026227951 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812882 nonsynonymous SNV 0.664 0 38 hm5C_associated_SNPs_26744 0 0 1 0 2 Ribosome 1 0.500231643795077 1 0.999536712409846 hm5C_site_27260 DeepMRMD:1;iRNA_m5C:0.999536712409846 27261 chr2 231328805 231328805 1 + G A LUAD 231328786 + 231328766 231328806 41 CCATTCTTTTGTGCAGTGATCAATAATGACAACCCTTTAGA CCATTCTTTTGTGCAGTGATCAATAATGACAACCCTTTAAA < 41bp 1 0.354147801415645 1 0.481035530567169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SP100 ENSG00000067066 CDS Human protein_coding chr2:231328786 chr2:231328805 nonsynonymous SNV 0.009 2 40 hm5C_associated_SNPs_26745 0 0 0 0 2 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_27261 DeepMRMD:1;iRNA_m5C:0.999536712157812 27262 chr20 4163347 4163347 1 + G A LUAD 4163341 + 4163321 4163361 41 TACCCACCTGAGCTCTGGTACCGCAAGATCTGCGGCTTTGA TACCCACCTGAGCTCTGGTACCGCAAAATCTGCGGCTTTGA < 41bp 1 0.303730063389549 1 0.0804717242717743 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMOX ENSG00000088826 CDS Human protein_coding chr20:4163341 chr20:4163347 synonymous SNV . 0 27 hm5C_associated_SNPs_26747 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27262 DeepMRMD:1;iRNA_m5C:0.999536712157815 27263 chr2 33526632 33526632 1 + G T LUAD 33526650 + 33526630 33526670 41 CAGTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGA CATTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGA < 41bp 1 0.149134782749845 1 0.0863726735115051 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526650 chr2:33526632 nonsynonymous SNV 0.756 1 3 hm5C_associated_SNPs_26748 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164403232 1 0.99953671193536 hm5C_site_27263 DeepMRMD:1;iRNA_m5C:0.99953671193536 27264 chr2 33526632 33526632 1 + G T LUAD 33526652 + 33526632 33526672 41 GTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGACC TTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGACC < 41bp 1 0.0398901602264914 1 0.032461553812027 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526652 chr2:33526632 nonsynonymous SNV 0.756 1 1 hm5C_associated_SNPs_26749 0 0 1 0 2 Endoplasmic reticulum 1 0.500310944339446 1 0.999378111321108 hm5C_site_27264 DeepMRMD:1;iRNA_m5C:0.999378111321108 27265 chr3 148562355 148562355 1 + T C LUAD 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCC < 41bp 1 0.418456560215186 1 0.323558330535889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562355 nonsynonymous SNV 0.896 4 41 hm5C_associated_SNPs_26750 0 0 0 0 2 exosome 1 0.500231644089236 1 0.999536711821528 hm5C_site_27265 DeepMRMD:1;iRNA_m5C:0.999536711821528 27266 chr3 148562355 148562355 1 + T C LUAD 148562342 + 148562322 148562362 41 TTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA TTTTATGTCCTGCCTGTGCTCAATATTGATGGCCACATCTA < 41bp 1 0.687585053238531 1 0.193345040082932 experiment 0.624829893522938 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562342 chr3:148562355 nonsynonymous SNV 0.896 4 34 hm5C_associated_SNPs_26751 0 0 0 0 2 exosome 1 0.500231643971241 1 0.999536712057518 hm5C_site_27266 DeepMRMD:1;iRNA_m5C:0.999536712057518 27267 chr3 148562355 148562355 1 + T C LUAD 148562354 + 148562334 148562374 41 CCTGTGCTCAATATTGATGGCTACATCTACACCTGGACCAA CCTGTGCTCAATATTGATGGCCACATCTACACCTGGACCAA < 41bp 1 0.453223542372431 1 0.153868407011032 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562354 chr3:148562355 nonsynonymous SNV 0.896 4 22 hm5C_associated_SNPs_26752 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27267 DeepMRMD:1;iRNA_m5C:0.999536712157815 27268 chr3 148562355 148562355 1 + T C LUAD 148562357 + 148562337 148562377 41 GTGCTCAATATTGATGGCTACATCTACACCTGGACCAAGGT GTGCTCAATATTGATGGCCACATCTACACCTGGACCAAGGT < 41bp 1 0.104499908184349 1 0.103228539228439 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562357 chr3:148562355 nonsynonymous SNV 0.896 4 19 hm5C_associated_SNPs_26753 0 0 0 0 2 exosome 1 0.500231636410018 1 0.999536727179963 hm5C_site_27268 DeepMRMD:1;iRNA_m5C:0.999536727179963 27269 chr3 148562355 148562355 1 + T C LUAD 148562360 + 148562340 148562380 41 CTCAATATTGATGGCTACATCTACACCTGGACCAAGGTATA CTCAATATTGATGGCCACATCTACACCTGGACCAAGGTATA < 41bp 1 0.635022893881182 1 0.782113134860992 experiment 0.729954212237635 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562360 chr3:148562355 nonsynonymous SNV 0.896 4 16 hm5C_associated_SNPs_26754 0 0 0 0 2 exosome 1 0.500231643921093 0.435773730278016 0.999536712157815 hm5C_site_27269 DeepMRMD:0.435773730278016;iRNA_m5C:0.999536712157815 27270 chr3 148562355 148562355 1 + T C LUAD 148562363 + 148562343 148562383 41 AATATTGATGGCTACATCTACACCTGGACCAAGGTATATGC AATATTGATGGCCACATCTACACCTGGACCAAGGTATATGC < 41bp 1 0.527061930621597 1 0.0998643040657043 experiment 0.945876138756805 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562363 chr3:148562355 nonsynonymous SNV 0.896 4 13 hm5C_associated_SNPs_26755 0 0 0 0 2 exosome 1 0.500231457572161 1 0.999537084855677 hm5C_site_27270 DeepMRMD:1;iRNA_m5C:0.999537084855677 27271 chr3 148562355 148562355 1 + T C LUAD 148562365 + 148562345 148562385 41 TATTGATGGCTACATCTACACCTGGACCAAGGTATATGCAC TATTGATGGCCACATCTACACCTGGACCAAGGTATATGCAC < 41bp 1 0.318230241944412 1 0.103054970502853 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562365 chr3:148562355 nonsynonymous SNV 0.896 4 11 hm5C_associated_SNPs_26756 0 0 0 0 2 exosome 1 0.500092669274216 1 0.999814661451567 hm5C_site_27271 DeepMRMD:1;iRNA_m5C:0.999814661451567 27272 chrX 68059870 68059870 1 + C A LUAD 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTAAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.167608370294327 1 0.0963639914989471 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059870 synonymous SNV . 0 3 hm5C_associated_SNPs_26757 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_27272 DeepMRMD:1;iRNA_m5C:0.999536712157815 27273 chr20 62312042 62312042 1 + C T LUAD 62312059 + 62312039 62312079 41 GGCCGGACTGCAGAAGCTGGCGGACATTATCCAGGTGGGGC GGCTGGACTGCAGAAGCTGGCGGACATTATCCAGGTGGGGC < 41bp 1 0.222125966213746 1 0.424872696399689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62312059 chr20:62312042 synonymous SNV . 0 4 hm5C_associated_SNPs_26758 0 0 1 0 2 chromatin 1 0.50023164392109 1 0.999536712157819 hm5C_site_27273 DeepMRMD:1;iRNA_m5C:0.999536712157819 27274 chr19 11145653 11145653 1 + G T LUAD 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TCATGTAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC < 41bp 1 0.0822640245288171 1 0.0778112709522247 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145653 stopgain 0.998 1 6 hm5C_associated_SNPs_26759 0 0 1 0 1 Nucleus 1 0.500231585004865 1 0.99953682999027 hm5C_site_27274 DeepMRMD:1;iRNA_m5C:0.99953682999027 27275 chr19 11145653 11145653 1 + G T LUAD 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGTAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG < 41bp 1 0.180216196078568 1 0.158548444509506 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145653 stopgain 0.998 1 5 hm5C_associated_SNPs_26760 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_27275 DeepMRMD:1;iRNA_m5C:0.999536712157816 27276 chr19 11145653 11145653 1 + G T LUAD 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GTAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG < 41bp 1 0.594400125354056 1 0.610330581665039 experiment 0.811199749291887 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145653 stopgain 0.998 1 2 hm5C_associated_SNPs_26761 0 0 1 0 1 Nucleus 1 0.500231640620248 0.779338836669922 0.999536718759504 hm5C_site_27276 DeepMRMD:0.779338836669922;iRNA_m5C:0.999536718759504 27277 chr5 128440942 128440942 1 + G A LUAD 128440946 + 128440926 128440966 41 TACCCTAAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT TACCCTAAAGGTCTTGAGAGCACGGTTCAAGAAATTGATTT < 41bp 1 0.660000235488165 1 0.41410368680954 experiment 0.67999952902367 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440946 chr5:128440942 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_26762 0 0 1 0 1 Ribosome 1 0.500231643493065 1 0.999536713013869 hm5C_site_27277 DeepMRMD:1;iRNA_m5C:0.999536713013869 27278 chr4 123260563 123260563 1 + G T LUAD 123260543 + 123260523 123260563 41 GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAG GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAT < 41bp 1 0.107521506198136 1 0.335877299308777 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123260543 chr4:123260563 nonsynonymous SNV 0.929 2 41 hm5C_associated_SNPs_26763 0 0 0 0 1 Nucleus 1 0.500231643864005 1 0.99953671227199 hm5C_site_27278 DeepMRMD:1;iRNA_m5C:0.99953671227199 27279 chr1 228523918 228523918 1 + C A LUAD 228523904 + 228523884 228523924 41 CCCCTTCACCTGTTTAGGACCACACAAGCCATCTCAGCACA CCCCTTCACCTGTTTAGGACCACACAAGCCATCTAAGCACA < 41bp 1 0.0384945273593415 1 0.168112725019455 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228523904 chr1:228523918 stopgain 0.001 0 35 hm5C_associated_SNPs_26764 0 0 0 0 2 Ribosome 1 0.500231644018641 1 0.999536711962719 hm5C_site_27279 DeepMRMD:1;iRNA_m5C:0.999536711962719 27280 chr11 94599272 94599272 1 + T C LUAD 94599284 + 94599264 94599304 41 CAGACCTCTCTTACCAGCAGCCAGCTGGCTGAGGAAAAGAA CAGACCTCCCTTACCAGCAGCCAGCTGGCTGAGGAAAAGAA < 41bp 1 0.0266962445090205 1 0.155204087495804 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94599284 chr11:94599272 synonymous SNV . 0 9 hm5C_associated_SNPs_26765 0 0 1 0 1 chromatin 1 0.500231645848914 1 0.999536708302172 hm5C_site_27280 DeepMRMD:1;iRNA_m5C:0.999536708302172 27281 chr11 94599272 94599272 1 + T C LUAD 94599292 + 94599272 94599312 41 TCTTACCAGCAGCCAGCTGGCTGAGGAAAAGAAGGAAGAGA CCTTACCAGCAGCCAGCTGGCTGAGGAAAAGAAGGAAGAGA < 41bp 1 0.515773459176225 1 0.472280561923981 experiment 0.968453081647551 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94599292 chr11:94599272 synonymous SNV . 0 1 hm5C_associated_SNPs_26766 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27281 DeepMRMD:1;iRNA_m5C:0.999536712157815 27282 chr22 23438430 23438430 1 + C T LUAD 23438428 + 23438408 23438448 41 CTGCGCTCCCGGGACATGACCACGGGCATTGTGGAGAACAA CTGCGCTCCCGGGACATGACCATGGGCATTGTGGAGAACAA < 41bp 1 0.405544969804232 1 0.638106465339661 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438428 chr22:23438430 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_26767 0 0 1 0 0 Ribosome 1 0.500231643899068 0.723787069320678 0.999536712201865 hm5C_site_27282 DeepMRMD:0.723787069320678;iRNA_m5C:0.999536712201865 27283 chr2 97008585 97008585 1 + A G LUAD 97008573 + 97008553 97008593 41 TAAACAGAAAGACACCGAACCAACCAACTTTAAAGTAAGAA TAAACAGAAAGACACCGAACCAACCAACTTTAGAGTAAGAA < 41bp 1 0.0559675963321005 1 0.202159583568573 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCAPH ENSG00000121152 CDS Human protein_coding chr2:97008573 chr2:97008585 nonsynonymous SNV 0.997 4 33 hm5C_associated_SNPs_26768 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27283 DeepMRMD:1;iRNA_m5C:0.999536712157815 27284 chr3 66430824 66430824 1 + G A LUAD 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGTGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.556522140268461 1 0.238210767507553 experiment 0.886955719463077 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430824 nonsynonymous SNV 0.001 2 9 hm5C_associated_SNPs_26769 0 0 0 0 1 Ribosome 1 0.500231647266151 1 0.999536705467698 hm5C_site_27284 DeepMRMD:1;iRNA_m5C:0.999536705467698 27285 chr11 114183054 114183054 1 + G T LUAD 114183048 + 114183028 114183068 41 GCAGAAGTTCTCCAGCCTCCCCCTGGGCCGGGAGGCAGTAG GCAGAAGTTCTCCAGCCTCCCCCTGGTCCGGGAGGCAGTAG < 41bp 1 0.331405308715349 1 0.16884857416153 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNMT ENSG00000166741 CDS Human protein_coding chr11:114183048 chr11:114183054 nonsynonymous SNV 0.208 0 27 hm5C_associated_SNPs_26770 0 0 0 0 0 Cytosol 1 0.500231644223739 1 0.999536711552522 hm5C_site_27285 DeepMRMD:1;iRNA_m5C:0.999536711552522 27286 chr3 49758482 49758482 1 + C G LUAD 49758471 + 49758451 49758491 41 AGCCCACCAGTGAGGAGGACCTCTGCCCCATCTGCTATGCC AGCCCACCAGTGAGGAGGACCTCTGCCCCATGTGCTATGCC < 41bp 1 0.122359814463204 1 0.263501465320587 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49758471 chr3:49758482 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_26772 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27286 DeepMRMD:1;iRNA_m5C:0.999536712157815 27287 chrX 73045778 73045778 1 + C A LUAD 73045760 - 73045740 73045780 41 TAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGCATGTT TATGCTTAAAGATGAGAGAACCTGGGACTGTTGAGCATGTT < 41bp 1 0.0633937784808357 1 0.150507211685181 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045760 chrX:73045778 . . 0 3 hm5C_associated_SNPs_26773 0 0 1 0 0 unknown 1 0.500231680524173 1 0.999536638951654 hm5C_site_27287 DeepMRMD:1;iRNA_m5C:0.999536638951654 27288 chr17 73738716 73738716 1 + G T LUAD 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGACGTACGGTTGCCCCTCTTTATCCGGCCTGAG < 41bp 1 0.167560831488143 1 0.0322897434234619 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738716 nonsynonymous SNV 0.954 4 18 hm5C_associated_SNPs_26774 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27288 DeepMRMD:1;iRNA_m5C:0.999536712157815 27289 chr2 172951500 172951500 1 + C T LUAD 172951509 + 172951489 172951529 41 CAGGCTTTGAACCGGAGGTTCCAGCAAACTCAGTACCTAGC CAGGCTTTGAATCGGAGGTTCCAGCAAACTCAGTACCTAGC < 41bp 1 0.109448649984982 1 0.065935492515564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLX1 ENSG00000144355 CDS Human protein_coding chr2:172951509 chr2:172951500 synonymous SNV . 0 12 hm5C_associated_SNPs_26775 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27289 DeepMRMD:1;iRNA_m5C:0.999536712157815 27290 chr19 2249448 2249448 1 + C T LUAD 2249433 + 2249413 2249453 41 GAGGAGCCAGCTGTGGGCACCAGTGGCCTCATCTTCCGAGA GAGGAGCCAGCTGTGGGCACCAGTGGCCTCATCTTTCGAGA < 41bp 1 0.359291539140314 1 0.595661520957947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AMH ENSG00000104899 CDS Human protein_coding chr19:2249433 chr19:2249448 synonymous SNV . 0 36 hm5C_associated_SNPs_26777 0 0 1 0 0 exosome 1 0.500231644066979 0.808676958084106 0.999536711866042 hm5C_site_27290 DeepMRMD:0.808676958084106;iRNA_m5C:0.999536711866042 27291 chr10 103908224 103908224 1 + C T LUAD 103908226 + 103908206 103908246 41 CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCCCCA CATCCTCATCATCCAGTTTTCGAAGCCGCTCACGATCCCCA < 41bp 1 0.472017444744396 1 0.804883599281311 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908226 chr10:103908224 nonsynonymous SNV 0.974 2 19 hm5C_associated_SNPs_26778 0 0 1 0 2 Cytosol 1 0.500231643921092 0.390232801437378 0.999536712157815 hm5C_site_27291 DeepMRMD:0.390232801437378;iRNA_m5C:0.999536712157815 27292 chr3 45537832 45537832 1 + A G LUAD 45537850 + 45537830 45537870 41 CTACTTCAGATACACTGACCCTCATAATCCACACAGGTAAA CTGCTTCAGATACACTGACCCTCATAATCCACACAGGTAAA < 41bp 1 0.160548335739208 1 0.0368391573429108 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45537850 chr3:45537832 nonsynonymous SNV 0.995 4 3 hm5C_associated_SNPs_26779 0 0 1 0 2 Endoplasmic reticulum 1 0.500252604289639 1 0.999494791420722 hm5C_site_27292 DeepMRMD:1;iRNA_m5C:0.999494791420722 27293 chr17 45673790 45673790 1 + C T LUAD 45673802 + 45673782 45673822 41 GGACCAAACAAATGGGATTTCCCCTCATTTATGTGGAAGCT GGACCAAATAAATGGGATTTCCCCTCATTTATGTGGAAGCT < 41bp 1 0.131839362675134 1 0.127249509096146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45673802 chr17:45673790 stopgain 1.000 1 9 hm5C_associated_SNPs_26780 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27293 DeepMRMD:1;iRNA_m5C:0.999536712157815 27294 chr9 74817551 74817551 1 + A T LUAD 74817563 + 74817543 74817583 41 TTGCTGGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTG TTGCTGGATGTAGCATAGACCTGCCACTCTTGGAGTGGCTG < 41bp 1 0.278137344407954 1 0.0428202748298645 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GDA ENSG00000119125 CDS Human protein_coding chr9:74817563 chr9:74817551 nonsynonymous SNV 0.918 1 9 hm5C_associated_SNPs_26781 0 0 0 0 1 Cytosol 1 0.500231643892001 1 0.999536712215998 hm5C_site_27294 DeepMRMD:1;iRNA_m5C:0.999536712215998 27295 chr12 113715048 113715048 1 + C T LUAD 113715049 + 113715029 113715069 41 CTTCCCTCTCCCCCAGAGGCCTGCCGGCATCTCCTACAGGC CTTCCCTCTCCCCCAGAGGTCTGCCGGCATCTCCTACAGGC < 41bp 1 0.341827158147205 1 0.0597029328346252 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113715049 chr12:113715048 nonsynonymous SNV 0.966 4 20 hm5C_associated_SNPs_26782 0 0 1 0 1 chromatin 1 0.500231643921116 1 0.999536712157768 hm5C_site_27295 DeepMRMD:1;iRNA_m5C:0.999536712157768 27296 chr6 99283457 99283457 1 + C A LUAD 99283470 + 99283450 99283490 41 ACCCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGT ACCCACAACAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGT < 41bp 1 0.293371291697227 1 0.281689435243607 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283470 chr6:99283457 nonsynonymous SNV 0.998 0 8 hm5C_associated_SNPs_26783 0 0 1 0 0 exosome 1 0.500231640646063 1 0.999536718707873 hm5C_site_27296 DeepMRMD:1;iRNA_m5C:0.999536718707873 27297 chr6 99283457 99283457 1 + C A LUAD 99283471 + 99283451 99283491 41 CCCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTC CCCACAACAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTC < 41bp 1 0.516868265342867 1 0.692177653312683 experiment 0.966263469314266 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283471 chr6:99283457 nonsynonymous SNV 0.998 0 7 hm5C_associated_SNPs_26784 0 0 1 0 0 exosome 1 0.500231643921092 0.615644693374634 0.999536712157815 hm5C_site_27297 DeepMRMD:0.615644693374634;iRNA_m5C:0.999536712157815 27298 chr6 99283457 99283457 1 + C A LUAD 99283472 + 99283452 99283492 41 CCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCC CCACAACAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCC < 41bp 1 0.51744235448937 1 0.423825263977051 experiment 0.965115291021259 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283472 chr6:99283457 nonsynonymous SNV 0.998 0 6 hm5C_associated_SNPs_26785 0 0 1 0 0 exosome 1 0.50023164724551 1 0.999536705508981 hm5C_site_27298 DeepMRMD:1;iRNA_m5C:0.999536705508981 27299 chr6 99283457 99283457 1 + C A LUAD 99283473 + 99283453 99283493 41 CACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCG CACAACAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCG < 41bp 1 0.436156958934087 1 0.325159221887589 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283473 chr6:99283457 nonsynonymous SNV 0.998 0 5 hm5C_associated_SNPs_26786 0 0 1 0 0 exosome 1 0.50023164392105 1 0.999536712157899 hm5C_site_27299 DeepMRMD:1;iRNA_m5C:0.999536712157899 27300 chr6 99283457 99283457 1 + C A LUAD 99283476 + 99283456 99283496 41 ACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCGCCT AACAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCGCCT < 41bp 1 0.464017983855213 1 0.516274094581604 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283476 chr6:99283457 nonsynonymous SNV 0.998 0 2 hm5C_associated_SNPs_26787 0 0 1 0 0 exosome 1 0.500231643921052 0.967451810836792 0.999536712157896 hm5C_site_27300 DeepMRMD:0.967451810836792;iRNA_m5C:0.999536712157896 27301 chr6 99283457 99283457 1 + C A LUAD 99283477 + 99283457 99283497 41 CCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCGCCTG ACAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCGCCTG < 41bp 1 0.636102633691933 1 0.518861413002014 experiment 0.727794732616134 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283477 chr6:99283457 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_26788 0 0 1 0 0 exosome 1 0.500231643826216 0.962277173995972 0.999536712347567 hm5C_site_27301 DeepMRMD:0.962277173995972;iRNA_m5C:0.999536712347567 27302 chr10 5789336 5789336 1 + G T LUAD 5789343 + 5789323 5789363 41 TTTAGAACTTCAGGATGTAGCTGAGGAAATAGGTGAACCGG TTTAGAACTTCAGTATGTAGCTGAGGAAATAGGTGAACCGG < 41bp 1 0.654465581624553 1 0.43637952208519 experiment 0.691068836750893 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FAM208B ENSG00000108021 CDS Human protein_coding chr10:5789343 chr10:5789336 nonsynonymous SNV 0.001 1 14 hm5C_associated_SNPs_26789 0 0 1 0 0 Nucleus 1 0.500231643921428 1 0.999536712157144 hm5C_site_27302 DeepMRMD:1;iRNA_m5C:0.999536712157144 27303 chr19 45912960 45912960 1 + C G LUAD 45912980 - 45912960 45913000 41 TTCTCCCTCCCATCCAGGCCCGGAGGCTGTTTGATGTCCTG TTCTCCCTCCCATCCAGGCCCGGAGGCTGTTTGATGTCCTC < 41bp 1 0.412079756982945 1 0.522021889686584 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERCC1 ENSG00000012061 CDS Human protein_coding chr19:45912980 chr19:45912960 nonsynonymous SNV 0.786 0 41 hm5C_associated_SNPs_26790 0 0 0 0 1 Cytosol 1 0.500231643921485 0.955956220626832 0.99953671215703 hm5C_site_27303 DeepMRMD:0.955956220626832;iRNA_m5C:0.99953671215703 27304 chr2 97875437 97875437 1 + A T LUAD 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGTCTTCTCGGAAAAAACCTGCCTTGAAGGTAATGAAAC < 41bp 1 0.279962257874806 1 0.211639106273651 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875437 synonymous SNV . 0 22 hm5C_associated_SNPs_26791 0 0 0 0 1 Cytosol 1 0.500231643918081 1 0.999536712163838 hm5C_site_27304 DeepMRMD:1;iRNA_m5C:0.999536712163838 27305 chr17 21731020 21731020 1 + G T LUAD 21731040 + 21731020 21731060 41 GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT TATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT < 41bp 1 0.264617494426667 1 0.344255059957504 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731040 chr17:21731020 nonsynonymous SNV 0.433 1 1 hm5C_associated_SNPs_26792 0 0 1 0 0 Ribosome 1 0.500231643921189 1 0.999536712157622 hm5C_site_27305 DeepMRMD:1;iRNA_m5C:0.999536712157622 27306 chr11 65826401 65826401 1 + G T LUAD 65826381 + 65826361 65826401 41 TCCTCTGAGAGCTCTGGGGACCGGGAGAAAGACTCAACCCG TCCTCTGAGAGCTCTGGGGACCGGGAGAAAGACTCAACCCT < 41bp 1 0.551194984669354 1 0.518266797065735 experiment 0.897610030661292 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826381 chr11:65826401 nonsynonymous SNV 0.483 0 41 hm5C_associated_SNPs_26793 0 0 1 0 0 Nucleus 1 0.500231641408959 0.96346640586853 0.999536717182081 hm5C_site_27306 DeepMRMD:0.96346640586853;iRNA_m5C:0.999536717182081 27307 chr6 107100441 107100441 1 + G T LUAD 107100423 + 107100403 107100443 41 ATTCATGCTTCCCAGTTTGGCAGATGTGAGCAAACTATGTA ATTCATGCTTCCCAGTTTGGCAGATGTGAGCAAACTATTTA < 41bp 1 0.509419211965064 1 0.446815878152847 experiment 0.981161576069872 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107100423 chr6:107100441 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_26794 0 0 1 0 2 Ribosome 1 0.500231643921114 1 0.999536712157771 hm5C_site_27307 DeepMRMD:1;iRNA_m5C:0.999536712157771 27308 chr7 27211532 27211532 1 + A T LUAD 27211542 - 27211522 27211562 41 GAAAACCGGATCCGGGAGCTCACAGCCAACTTTAATTTTTC GAAAACCGGATCCGGGAGCTCACAGCCAACATTAATTTTTC < 41bp 1 0.259269515398508 1 0.204281121492386 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOXA10 ENSG00000253293 CDS Human protein_coding chr7:27211542 chr7:27211532 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_26795 0 0 1 0 0 exosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_27308 DeepMRMD:1;iRNA_m5C:0.999536712157806 27309 chr7 77256328 77256328 1 + A G LUAD 77256319 + 77256299 77256339 41 AGTTTTGAGATTAAGAAGGTCCCTCTCCAAGAGGGACCAAA AGTTTTGAGATTAAGAAGGTCCCTCTCCAGGAGGGACCAAA < 41bp 1 0.032400374757221 1 0.0138674378395081 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256319 chr7:77256328 synonymous SNV . 0 30 hm5C_associated_SNPs_26796 0 0 1 0 0 Ribosome 1 0.500231643917482 1 0.999536712165036 hm5C_site_27309 DeepMRMD:1;iRNA_m5C:0.999536712165036 27310 chr7 77256328 77256328 1 + A G LUAD 77256320 + 77256300 77256340 41 GTTTTGAGATTAAGAAGGTCCCTCTCCAAGAGGGACCAAAA GTTTTGAGATTAAGAAGGTCCCTCTCCAGGAGGGACCAAAA < 41bp 1 0.0334303740680121 1 0.0933127403259277 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256320 chr7:77256328 synonymous SNV . 0 29 hm5C_associated_SNPs_26797 0 0 1 0 0 Ribosome 1 0.500231643923884 1 0.999536712152232 hm5C_site_27310 DeepMRMD:1;iRNA_m5C:0.999536712152232 27311 chr7 77256328 77256328 1 + A G LUAD 77256321 + 77256301 77256341 41 TTTTGAGATTAAGAAGGTCCCTCTCCAAGAGGGACCAAAAA TTTTGAGATTAAGAAGGTCCCTCTCCAGGAGGGACCAAAAA < 41bp 1 0.142915056101737 1 0.0448750257492065 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256321 chr7:77256328 synonymous SNV . 0 28 hm5C_associated_SNPs_26798 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27311 DeepMRMD:1;iRNA_m5C:0.999536712157815 27312 chr7 77256328 77256328 1 + A G LUAD 77256335 + 77256315 77256355 41 AGGTCCCTCTCCAAGAGGGACCAAAAAGTTTTGATGGGAAC AGGTCCCTCTCCAGGAGGGACCAAAAAGTTTTGATGGGAAC < 41bp 1 0.119990796969906 1 0.406006515026093 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256335 chr7:77256328 synonymous SNV . 0 14 hm5C_associated_SNPs_26799 0 0 1 0 0 Ribosome 1 0.500231643921288 1 0.999536712157425 hm5C_site_27312 DeepMRMD:1;iRNA_m5C:0.999536712157425 27313 chr7 77256328 77256328 1 + A G LUAD 77256336 + 77256316 77256356 41 GGTCCCTCTCCAAGAGGGACCAAAAAGTTTTGATGGGAACA GGTCCCTCTCCAGGAGGGACCAAAAAGTTTTGATGGGAACA < 41bp 1 0.294367350551231 1 0.648725986480713 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256336 chr7:77256328 synonymous SNV . 0 13 hm5C_associated_SNPs_26800 0 0 1 0 0 Ribosome 1 0.500231643921092 0.702548027038574 0.999536712157815 hm5C_site_27313 DeepMRMD:0.702548027038574;iRNA_m5C:0.999536712157815 27314 chr19 41778033 41778033 1 + G T LUAD 41778031 + 41778011 41778051 41 GAGCACCCACCAGCTTCCTCCCGCCTGAAGCTTCTCAACTC GAGCACCCACCAGCTTCCTCCCTCCTGAAGCTTCTCAACTC < 41bp 1 0.0525983863901314 1 0.116877019405365 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41778031 chr19:41778033 synonymous SNV . 0 23 hm5C_associated_SNPs_26801 0 0 1 0 0 Cytosol 1 0.50023164407195 1 0.999536711856099 hm5C_site_27314 DeepMRMD:1;iRNA_m5C:0.999536711856099 27315 chr19 36227600 36227600 1 + C T LUAD 36227620 + 36227600 36227640 41 CGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG TGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG < 41bp 1 0.00769621872998638 1 0.0831719040870667 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227620 chr19:36227600 nonsynonymous SNV 0.995 3 1 hm5C_associated_SNPs_26802 0 0 1 0 1 chromatin 1 0.500231996593772 1 0.999536006812456 hm5C_site_27315 DeepMRMD:1;iRNA_m5C:0.999536006812456 27316 chr16 57144676 57144676 1 + G A LUAD 57144680 + 57144660 57144700 41 CCACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCC CCACATACCCAGTGGGAGTGCCCCAGCAGCGGGGGCAGCCC < 41bp 1 0.629845368413643 1 0.437915503978729 experiment 0.740309263172714 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144680 chr16:57144676 nonsynonymous SNV 0.025 0 17 hm5C_associated_SNPs_26803 0 0 1 0 1 chromatin 1 0.500231643904321 1 0.999536712191357 hm5C_site_27316 DeepMRMD:1;iRNA_m5C:0.999536712191357 27317 chr16 57144676 57144676 1 + G A LUAD 57144681 + 57144661 57144701 41 CACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCC CACATACCCAGTGGGAGTGCCCCAGCAGCGGGGGCAGCCCC < 41bp 1 0.235494650708501 1 0.291856437921524 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144681 chr16:57144676 nonsynonymous SNV 0.025 0 16 hm5C_associated_SNPs_26804 0 0 1 0 1 chromatin 1 0.500227424008894 1 0.999545151982213 hm5C_site_27317 DeepMRMD:1;iRNA_m5C:0.999545151982213 27318 chr16 57144676 57144676 1 + G A LUAD 57144682 + 57144662 57144702 41 ACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCCC ACATACCCAGTGGGAGTGCCCCAGCAGCGGGGGCAGCCCCC < 41bp 1 0.36997382727193 1 0.380701333284378 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144682 chr16:57144676 nonsynonymous SNV 0.025 0 15 hm5C_associated_SNPs_26805 0 0 1 0 1 chromatin 1 0.500231643920992 1 0.999536712158017 hm5C_site_27318 DeepMRMD:1;iRNA_m5C:0.999536712158017 27319 chr16 57144676 57144676 1 + G A LUAD 57144695 + 57144675 57144715 41 GGGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGT GAGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGT < 41bp 1 0.202291372674619 1 0.241925120353699 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144695 chr16:57144676 nonsynonymous SNV 0.025 0 2 hm5C_associated_SNPs_26806 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27319 DeepMRMD:1;iRNA_m5C:0.999536712157815 27320 chr2 101598836 101598836 1 + C G LUAD 101598827 + 101598807 101598847 41 CAGCTCTGCCTGGTCCAGGACTCCAACGTCCAGGTGATCCC CAGCTCTGCCTGGTCCAGGACTCCAACGTGCAGGTGATCCC < 41bp 1 0.685454178079431 1 0.977352142333984 experiment 0.629091643841138 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101598827 chr2:101598836 synonymous SNV . 0 30 hm5C_associated_SNPs_26807 0 0 1 0 1 cytosol 1 0.500232130451625 0.0452957153320319 0.999535739096751 hm5C_site_27320 DeepMRMD:0.0452957153320319;iRNA_m5C:0.999535739096751 27321 chr6 142519584 142519584 1 + G A LUAD 142519603 + 142519583 142519623 41 AGAAAATGAAGATGCTGGAGCAGCCTCTCTGCCCACTCAGC AAAAAATGAAGATGCTGGAGCAGCCTCTCTGCCCACTCAGC < 41bp 1 0.28695660662256 1 0.234887003898621 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519603 chr6:142519584 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_26808 0 0 1 1 1 Ribosome 1 0.500231643919208 1 0.999536712161584 hm5C_site_27321 DeepMRMD:1;iRNA_m5C:0.999536712161584 27322 chr22 39770447 39770447 1 + G T LUAD 39770450 + 39770430 39770470 41 ATGGCGTGGCCGTGGGCGTGCTCGCCTTCCTCACCTGCCTG ATGGCGTGGCCGTGGGCTTGCTCGCCTTCCTCACCTGCCTG < 41bp 1 0.679985719331195 1 0.114782243967056 experiment 0.64002856133761 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNGR1 ENSG00000100321 CDS Human protein_coding chr22:39770450 chr22:39770447 nonsynonymous SNV 0.964 1 18 hm5C_associated_SNPs_26809 0 0 1 0 0 Endoplasmic reticulum 1 0.500233361291559 1 0.999533277416882 hm5C_site_27322 DeepMRMD:1;iRNA_m5C:0.999533277416882 27323 chr3 9488802 9488802 1 + G A LUAD 9488809 + 9488789 9488829 41 AAAGAAAGAAGCGGCGGGATCAGCCCTTGGAACAGAGCAAC AAAGAAAGAAGCGACGGGATCAGCCCTTGGAACAGAGCAAC < 41bp 1 0.317061313042295 1 0.469285249710083 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9488809 chr3:9488802 synonymous SNV . 0 14 hm5C_associated_SNPs_26810 0 0 1 0 1 Nucleus 1 0.500231643921089 1 0.999536712157822 hm5C_site_27323 DeepMRMD:1;iRNA_m5C:0.999536712157822 27324 chr19 11422865 11422865 1 + G A LUAD 11422851 + 11422831 11422871 41 TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTGAGTGGG TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTAAGTGGG < 41bp 1 0.657377965958786 1 0.60783314704895 experiment 0.685244068082427 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TSPAN16 ENSG00000130167 CDS Human protein_coding chr19:11422851 chr19:11422865 synonymous SNV . 0 35 hm5C_associated_SNPs_26811 0 0 0 1 2 nucleus 1 0.500231643921092 0.7843337059021 0.999536712157815 hm5C_site_27324 DeepMRMD:0.7843337059021;iRNA_m5C:0.999536712157815 27325 chr5 61778980 61778980 1 + G C LUAD 61778983 + 61778963 61779003 41 TACTCCTCTAATTCAGAGATCACTGGAATTTTCTGTAAGCT TACTCCTCTAATTCAGACATCACTGGAATTTTCTGTAAGCT < 41bp 1 0.126766469122691 1 0.105482041835785 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IPO11 ENSG00000086200 CDS Human protein_coding chr5:61778983 chr5:61778980 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_26812 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27325 DeepMRMD:1;iRNA_m5C:0.999536712157815 27326 chr14 21549947 21549947 1 + A G LUAD 21549960 + 21549940 21549980 41 CGGTGCCAGCAGTGGAGGGGCCCAGTGGGGGCCCCGCAGCC CGGTGCCGGCAGTGGAGGGGCCCAGTGGGGGCCCCGCAGCC < 41bp 1 0.44180598211061 1 0.75158566236496 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549960 chr14:21549947 nonsynonymous SNV 0.978 2 8 hm5C_associated_SNPs_26813 0 0 1 0 0 Cytosol 1 0.500231643921092 0.49682867527008 0.999536712157815 hm5C_site_27326 DeepMRMD:0.49682867527008;iRNA_m5C:0.999536712157815 27327 chr14 21549947 21549947 1 + A G LUAD 21549961 + 21549941 21549981 41 GGTGCCAGCAGTGGAGGGGCCCAGTGGGGGCCCCGCAGCCC GGTGCCGGCAGTGGAGGGGCCCAGTGGGGGCCCCGCAGCCC < 41bp 1 0.657741691319082 1 0.508081376552582 experiment 0.684516617361836 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549961 chr14:21549947 nonsynonymous SNV 0.978 2 7 hm5C_associated_SNPs_26814 0 0 1 0 0 Cytosol 1 0.500231643920619 0.983837246894836 0.999536712158762 hm5C_site_27327 DeepMRMD:0.983837246894836;iRNA_m5C:0.999536712158762 27328 chr11 45832808 45832808 1 + G A LUAD 45832817 + 45832797 45832837 41 GCCTACACCTGGGTCAGGGGCTGGGAGATGAAGAAGACTCC GCCTACACCTGAGTCAGGGGCTGGGAGATGAAGAAGACTCC < 41bp 1 0.552266625729511 1 0.724731802940369 experiment 0.895466748540978 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC35C1 ENSG00000181830 CDS Human protein_coding chr11:45832817 chr11:45832808 stopgain 1.000 1 12 hm5C_associated_SNPs_26815 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.550536394119262 0.999536712157815 hm5C_site_27328 DeepMRMD:0.550536394119262;iRNA_m5C:0.999536712157815 27329 chr1 227923162 227923162 1 + C G LUAD 227923153 + 227923133 227923173 41 TTCACTGCGCAGGCGCCGAGCGGCCGAGGCGCCGCGGTCGG TTCACTGCGCAGGCGCCGAGCGGCCGAGGGGCCGCGGTCGG < 41bp 1 0.687674727380135 1 0.675351500511169 experiment 0.62465054523973 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227923153 chr1:227923162 nonsynonymous SNV 0.002 1 30 hm5C_associated_SNPs_26816 0 0 1 0 1 Ribosome 1 0.500231643921092 0.649296998977662 0.999536712157815 hm5C_site_27329 DeepMRMD:0.649296998977662;iRNA_m5C:0.999536712157815 27330 chr20 42343776 42343776 1 + G A LUAD 42343775 + 42343755 42343795 41 GACTTGGTTTTGGTTTCAGCCGACAACTGCCCCTTCAAACT GACTTGGTTTTGGTTTCAGCCAACAACTGCCCCTTCAAACT < 41bp 1 0.518135231505884 1 0.609786212444305 experiment 0.963729536988233 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42343775 chr20:42343776 synonymous SNV . 0 22 hm5C_associated_SNPs_26817 0 0 1 0 1 Cytosol 1 0.500231643876516 0.78042757511139 0.999536712246968 hm5C_site_27330 DeepMRMD:0.78042757511139;iRNA_m5C:0.999536712246968 27331 chr17 60768374 60768374 1 + G T LUAD 60768363 + 60768343 60768383 41 TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGC TGAACTACTCCAACTGGGGGCCCCCGGGCTTTGGCCCCAGC < 41bp 1 0.0361290043161495 1 0.177093863487244 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768363 chr17:60768374 nonsynonymous SNV 0.965 1 32 hm5C_associated_SNPs_26818 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27331 DeepMRMD:1;iRNA_m5C:0.999536712157815 27332 chr17 60768374 60768374 1 + G T LUAD 60768364 + 60768344 60768384 41 GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCA GAACTACTCCAACTGGGGGCCCCCGGGCTTTGGCCCCAGCA < 41bp 1 0.112804283973375 1 0.496063739061356 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768364 chr17:60768374 nonsynonymous SNV 0.965 1 31 hm5C_associated_SNPs_26819 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27332 DeepMRMD:1;iRNA_m5C:0.999536712157815 27333 chr17 60768374 60768374 1 + G T LUAD 60768365 + 60768345 60768385 41 AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCAT AACTACTCCAACTGGGGGCCCCCGGGCTTTGGCCCCAGCAT < 41bp 1 0.224622034779493 1 0.6790531873703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768365 chr17:60768374 nonsynonymous SNV 0.965 1 30 hm5C_associated_SNPs_26820 0 0 1 0 1 Cytosol 1 0.500231643921092 0.6418936252594 0.999536712157815 hm5C_site_27333 DeepMRMD:0.6418936252594;iRNA_m5C:0.999536712157815 27334 chr17 60768374 60768374 1 + G T LUAD 60768377 + 60768357 60768397 41 TGGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAA TGGGGGCCCCCGGGCTTTGGCCCCAGCATGCTGAGCCACAA < 41bp 1 0.506747860649441 1 0.507440388202667 experiment 0.986504278701119 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768377 chr17:60768374 nonsynonymous SNV 0.965 1 18 hm5C_associated_SNPs_26821 0 0 1 0 1 Cytosol 1 0.500231643921092 0.985119223594666 0.999536712157815 hm5C_site_27334 DeepMRMD:0.985119223594666;iRNA_m5C:0.999536712157815 27335 chr17 60768374 60768374 1 + G T LUAD 60768378 + 60768358 60768398 41 GGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAAC GGGGGCCCCCGGGCTTTGGCCCCAGCATGCTGAGCCACAAC < 41bp 1 0.167658980956924 1 0.341413199901581 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768378 chr17:60768374 nonsynonymous SNV 0.965 1 17 hm5C_associated_SNPs_26822 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_27335 DeepMRMD:1;iRNA_m5C:0.999536712157815 27336 chr17 60768374 60768374 1 + G T LUAD 60768379 + 60768359 60768399 41 GGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACA GGGGCCCCCGGGCTTTGGCCCCAGCATGCTGAGCCACAACA < 41bp 1 0.0821036040785534 1 0.360452651977539 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768379 chr17:60768374 nonsynonymous SNV 0.965 1 16 hm5C_associated_SNPs_26823 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27336 DeepMRMD:1;iRNA_m5C:0.999536712157815 27337 chr17 60768374 60768374 1 + G T LUAD 60768380 + 60768360 60768400 41 GGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAG GGGCCCCCGGGCTTTGGCCCCAGCATGCTGAGCCACAACAG < 41bp 1 0.654996603874609 1 0.692513823509216 experiment 0.690006792250782 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768380 chr17:60768374 nonsynonymous SNV 0.965 1 15 hm5C_associated_SNPs_26824 0 0 1 0 1 Cytosol 1 0.500231643921059 0.614972352981568 0.999536712157882 hm5C_site_27337 DeepMRMD:0.614972352981568;iRNA_m5C:0.999536712157882 27338 chr7 128505565 128505565 1 + A G LUAD 128505545 + 128505525 128505565 41 ATCCCCGCTGTCCTGGAGATCCCCTCCAAGGAGCACCCATA ATCCCCGCTGTCCTGGAGATCCCCTCCAAGGAGCACCCATG < 41bp 1 0.373011955010382 1 0.128354579210281 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP6V1F ENSG00000128524 CDS Human protein_coding chr7:128505545 chr7:128505565 nonsynonymous SNV 0.848 4 41 hm5C_associated_SNPs_26825 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_27338 DeepMRMD:1;iRNA_m5C:0.999536712157815 27339 chr11 67018026 67018026 1 + C T LUAD 67018018 + 67017998 67018038 41 CCCCGTGTGCTAGTGCAGCACTGCCCAGCCCGAACCCCCCA CCCCGTGTGCTAGTGCAGCACTGCCCAGTCCGAACCCCCCA < 41bp 1 0.638479033107458 1 0.176934808492661 experiment 0.723041933785085 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67018018 chr11:67018026 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_26826 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27339 DeepMRMD:1;iRNA_m5C:0.999536712157815 27340 chr6 5369389 5369389 1 + G T LUAD 5369391 + 5369371 5369411 41 ATTTTCCACCAGCTGGAGGCCGTGCGGCTCTTCTCCAAGCA ATTTTCCACCAGCTGGAGTCCGTGCGGCTCTTCTCCAAGCA < 41bp 1 0.274829033792046 1 0.523481488227844 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FARS2 ENSG00000145982 CDS Human protein_coding chr6:5369391 chr6:5369389 nonsynonymous SNV 0.973 1 19 hm5C_associated_SNPs_26827 0 0 1 0 1 Ribosome 1 0.500231643921093 0.953037023544312 0.999536712157814 hm5C_site_27340 DeepMRMD:0.953037023544312;iRNA_m5C:0.999536712157814 27341 chr10 60037063 60037063 1 + G T LUAD 60037076 + 60037056 60037096 41 TACTGCCGTTGTTGGAGGTCCAAAAAGGTGAGGAAAGCAAT TACTGCCTTTGTTGGAGGTCCAAAAAGGTGAGGAAAGCAAT < 41bp 1 0.568678819150526 1 0.405042052268982 experiment 0.862642361698948 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CISD1 ENSG00000122873 CDS Human protein_coding chr10:60037076 chr10:60037063 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_26828 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27341 DeepMRMD:1;iRNA_m5C:0.999536712157815 27342 chr1 248039253 248039253 1 + C A LUAD 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGACGACCTGCGCAGTGTGCA < 41bp 1 0.657212902867436 1 0.504788756370544 experiment 0.685574194265128 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039253 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_26829 0 0 0 0 2 Cytosol 1 0.500231645904455 0.990422487258912 0.99953670819109 hm5C_site_27342 DeepMRMD:0.990422487258912;iRNA_m5C:0.99953670819109 27343 chr9 135947032 135947032 1 + C A LUAD 135947013 + 135946993 135947033 41 CCCGTGACCCCCACGGGTGACTCCGAGACCGCCCCCGTGCC CCCGTGACCCCCACGGGTGACTCCGAGACCGCCCCCGTGAC < 41bp 1 0.674440265120789 1 0.331147074699402 experiment 0.651119469758421 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947013 chr9:135947032 nonsynonymous SNV 0.001 1 40 hm5C_associated_SNPs_26830 0 0 0 0 0 exosome 1 0.500231643005729 1 0.999536713988541 hm5C_site_27343 DeepMRMD:1;iRNA_m5C:0.999536713988541 27344 chr9 135947032 135947032 1 + C A LUAD 135947015 + 135946995 135947035 41 CGTGACCCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGC CGTGACCCCCACGGGTGACTCCGAGACCGCCCCCGTGACGC < 41bp 1 0.694652997116581 1 0.795794785022736 experiment 0.610694005766838 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947015 chr9:135947032 nonsynonymous SNV 0.001 1 38 hm5C_associated_SNPs_26831 0 0 0 0 0 exosome 1 0.500231644038202 0.408410429954528 0.999536711923597 hm5C_site_27344 DeepMRMD:0.408410429954528;iRNA_m5C:0.999536711923597 27345 chr9 135947032 135947032 1 + C A LUAD 135947021 + 135947001 135947041 41 CCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGG CCCCACGGGTGACTCCGAGACCGCCCCCGTGACGCCCACGG < 41bp 1 0.332580950356011 1 0.44519567489624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947021 chr9:135947032 nonsynonymous SNV 0.001 1 32 hm5C_associated_SNPs_26832 0 0 0 0 0 exosome 1 0.500231644687296 1 0.999536710625408 hm5C_site_27345 DeepMRMD:1;iRNA_m5C:0.999536710625408 27346 chr9 135947032 135947032 1 + C A LUAD 135947022 + 135947002 135947042 41 CCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGG CCCACGGGTGACTCCGAGACCGCCCCCGTGACGCCCACGGG < 41bp 1 0.556442155227598 1 0.220927447080612 experiment 0.887115689544803 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947022 chr9:135947032 nonsynonymous SNV 0.001 1 31 hm5C_associated_SNPs_26833 0 0 0 0 0 exosome 1 0.500231634641693 1 0.999536730716613 hm5C_site_27346 DeepMRMD:1;iRNA_m5C:0.999536730716613 27347 chr9 135947032 135947032 1 + C A LUAD 135947024 + 135947004 135947044 41 CACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTG CACGGGTGACTCCGAGACCGCCCCCGTGACGCCCACGGGTG < 41bp 1 0.321626445219132 1 0.144766122102737 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947024 chr9:135947032 nonsynonymous SNV 0.001 1 29 hm5C_associated_SNPs_26834 0 0 0 0 0 exosome 1 0.500231644916896 1 0.999536710166207 hm5C_site_27347 DeepMRMD:1;iRNA_m5C:0.999536710166207 27348 chr9 135947032 135947032 1 + C A LUAD 135947025 + 135947005 135947045 41 ACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGA ACGGGTGACTCCGAGACCGCCCCCGTGACGCCCACGGGTGA < 41bp 1 0.507065662075047 1 0.348704040050507 experiment 0.985868675849906 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947025 chr9:135947032 nonsynonymous SNV 0.001 1 28 hm5C_associated_SNPs_26835 0 0 0 0 0 exosome 1 0.500231643967207 1 0.999536712065587 hm5C_site_27348 DeepMRMD:1;iRNA_m5C:0.999536712065587 27349 chr9 135947032 135947032 1 + C A LUAD 135947026 + 135947006 135947046 41 CGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGAC CGGGTGACTCCGAGACCGCCCCCGTGACGCCCACGGGTGAC < 41bp 1 0.48268783334444 1 0.14788681268692 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947026 chr9:135947032 nonsynonymous SNV 0.001 1 27 hm5C_associated_SNPs_26836 0 0 0 0 0 exosome 1 0.500231638671308 1 0.999536722657384 hm5C_site_27349 DeepMRMD:1;iRNA_m5C:0.999536722657384 27350 chr9 135947032 135947032 1 + C A LUAD 135947027 + 135947007 135947047 41 GGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACT GGGTGACTCCGAGACCGCCCCCGTGACGCCCACGGGTGACT < 41bp 1 0.260725020988424 1 0.209105342626572 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947027 chr9:135947032 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_26837 0 0 0 0 0 exosome 1 0.500231643905455 1 0.99953671218909 hm5C_site_27350 DeepMRMD:1;iRNA_m5C:0.99953671218909 27351 chr9 135947032 135947032 1 + C A LUAD 135947033 + 135947013 135947053 41 CTCCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGG CTCCGAGACCGCCCCCGTGACGCCCACGGGTGACTCCGGGG < 41bp 1 0.525636702982588 1 0.219800353050232 experiment 0.948726594034824 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947033 chr9:135947032 nonsynonymous SNV 0.001 1 20 hm5C_associated_SNPs_26839 0 0 0 0 0 exosome 1 0.500231623225997 1 0.999536753548007 hm5C_site_27351 DeepMRMD:1;iRNA_m5C:0.999536753548007 27352 chr9 135947032 135947032 1 + C A LUAD 135947035 + 135947015 135947055 41 CCGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC CCGAGACCGCCCCCGTGACGCCCACGGGTGACTCCGGGGCC < 41bp 1 0.343405198389271 1 0.124137431383133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947035 chr9:135947032 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_26840 0 0 0 0 0 exosome 1 0.500215244189189 1 0.999569511621623 hm5C_site_27352 DeepMRMD:1;iRNA_m5C:0.999569511621623 27353 chr9 135947032 135947032 1 + C A LUAD 135947036 + 135947016 135947056 41 CGAGACCGCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC CGAGACCGCCCCCGTGACGCCCACGGGTGACTCCGGGGCCC < 41bp 1 0.550027091063777 1 0.163646072149277 experiment 0.899945817872446 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947036 chr9:135947032 nonsynonymous SNV 0.001 1 17 hm5C_associated_SNPs_26841 0 0 0 0 0 exosome 1 0.500231504854039 1 0.999536990291922 hm5C_site_27353 DeepMRMD:1;iRNA_m5C:0.999536990291922 27354 chr5 454086 454086 1 + G T LUAD 454080 + 454060 454100 41 ATGTACCACCAAGCCCTGAGCACGCGGATGCAGGACCTCGC ATGTACCACCAAGCCCTGAGCACGCGTATGCAGGACCTCGC < 41bp 1 0.635339694115129 1 0.350184291601181 experiment 0.729320611769741 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC3 ENSG00000180104 CDS Human protein_coding chr5:454080 chr5:454086 synonymous SNV . 0 27 hm5C_associated_SNPs_26843 0 0 1 0 1 Ribosome 1 0.500228235021993 1 0.999543529956013 hm5C_site_27354 DeepMRMD:1;iRNA_m5C:0.999543529956013 27355 chr5 179149988 179149988 1 + G T LUAD 179149974 + 179149954 179149994 41 AAGAATAGTTGATGATTGGGCCAATGATGGATGGGGCCTGA AAGAATAGTTGATGATTGGGCCAATGATGGATGGTGCCTGA < 41bp 1 0.201332741229885 1 0.279732465744019 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179149974 chr5:179149988 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_26844 0 0 1 0 1 Nucleus 1 0.500209559748366 1 0.999580880503269 hm5C_site_27355 DeepMRMD:1;iRNA_m5C:0.999580880503269 27356 chr17 27011938 27011938 1 + A T LUAD 27011928 + 27011908 27011948 41 ACAGACTTCCTTCGACTGCCCCATTTTACCAAACGGCGAAC ACAGACTTCCTTCGACTGCCCCATTTTACCTAACGGCGAAC < 41bp 1 0.06226969988899 1 0.0436770021915436 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011928 chr17:27011938 stopgain 0.998 1 31 hm5C_associated_SNPs_26845 0 0 1 0 1 Cytosol 1 0.500231643466589 1 0.999536713066822 hm5C_site_27356 DeepMRMD:1;iRNA_m5C:0.999536713066822 27357 chr17 27011938 27011938 1 + A T LUAD 27011948 + 27011928 27011968 41 CCATTTTACCAAACGGCGAACTGCATGGAGAGAGGAAGAGC CCATTTTACCTAACGGCGAACTGCATGGAGAGAGGAAGAGC < 41bp 1 0.593448285372857 1 0.747698426246643 experiment 0.813103429254286 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011948 chr17:27011938 stopgain 0.998 1 11 hm5C_associated_SNPs_26846 0 0 1 0 1 Cytosol 1 0.500231643921092 0.504603147506714 0.999536712157815 hm5C_site_27357 DeepMRMD:0.504603147506714;iRNA_m5C:0.999536712157815 27358 chr15 44085915 44085915 1 + G T LUAD 44085898 + 44085878 44085918 41 CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGA CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGTAGA < 41bp 1 0.262958039711397 1 0.0479691326618195 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085898 chr15:44085915 stopgain 1.000 0 38 hm5C_associated_SNPs_26847 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27358 DeepMRMD:1;iRNA_m5C:0.999536712157815 27359 chr15 44085915 44085915 1 + G T LUAD 44085902 + 44085882 44085922 41 CAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGATCAT CAGTGCCCCATCATCTCTACCCCCAGGGACTCGTAGATCAT < 41bp 1 0.325062350921199 1 0.11250913143158 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085902 chr15:44085915 stopgain 1.000 0 34 hm5C_associated_SNPs_26848 0 0 1 0 2 Cytosol 1 0.500231643921048 1 0.999536712157903 hm5C_site_27359 DeepMRMD:1;iRNA_m5C:0.999536712157903 27360 chr6 24423246 24423246 1 + G T LUAD 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTTGACGACAGCTAGAAGCTCCATTGCCT < 41bp 1 0.49032169671949 1 0.0672610402107239 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423246 stopgain 0.995 1 15 hm5C_associated_SNPs_26849 0 0 1 0 2 Ribosome 1 0.50023164335745 1 0.9995367132851 hm5C_site_27360 DeepMRMD:1;iRNA_m5C:0.9995367132851 27361 chr10 72434397 72434397 1 + G T LUAD 72434407 + 72434387 72434427 41 TCTCCCACGTGGTGTCTGGCCCAGCAGCAGCCTCTGCAGGG TCTCCCACGTTGTGTCTGGCCCAGCAGCAGCCTCTGCAGGG < 41bp 1 0.184028427737739 1 0.203401267528534 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72434407 chr10:72434397 synonymous SNV . 0 11 hm5C_associated_SNPs_26850 0 0 0 0 1 chromatin 1 0.500242330999847 1 0.999515338000305 hm5C_site_27361 DeepMRMD:1;iRNA_m5C:0.999515338000305 27362 chr17 48696099 48696099 1 + G A LUAD 48696108 + 48696088 48696128 41 TTCGTGCTGACGGCCCAGTTCGTGCTAGTCAACGTGGTGAT TTCGTGCTGACAGCCCAGTTCGTGCTAGTCAACGTGGTGAT < 41bp 1 0.437542084689656 1 0.105683326721191 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48696108 chr17:48696099 synonymous SNV . 0 12 hm5C_associated_SNPs_26852 0 0 1 0 1 exosome 1 0.500231643915959 1 0.999536712168082 hm5C_site_27362 DeepMRMD:1;iRNA_m5C:0.999536712168082 27363 chrX 70613945 70613945 1 + A G LUAD 70613959 + 70613939 70613979 41 TTATCAACTGACACAGACAGCAGCTCAGCTGAAGATAGTGA TTATCAGCTGACACAGACAGCAGCTCAGCTGAAGATAGTGA < 41bp 1 0.0850670894669416 1 0.238472402095795 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAF1 ENSG00000147133 CDS Human protein_coding chrX:70613959 chrX:70613945 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_26853 0 0 1 0 0 Cytosol 1 0.500231643787203 1 0.999536712425595 hm5C_site_27363 DeepMRMD:1;iRNA_m5C:0.999536712425595 27364 chr1 24996713 24996713 1 + C T LUAD 24996696 + 24996676 24996716 41 CTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCC CTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCTCCC < 41bp 1 0.338356243384341 1 0.125093042850494 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996696 chr1:24996713 synonymous SNV . 0 38 hm5C_associated_SNPs_26854 0 0 1 0 0 Cytosol 1 0.500216441440284 1 0.999567117119433 hm5C_site_27364 DeepMRMD:1;iRNA_m5C:0.999567117119433 27365 chr1 24996713 24996713 1 + C T LUAD 24996697 + 24996677 24996717 41 TGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCG TGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCTCCCG < 41bp 1 0.624367349678348 1 0.104625046253204 experiment 0.751265300643305 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996697 chr1:24996713 synonymous SNV . 0 37 hm5C_associated_SNPs_26855 0 0 1 0 0 Cytosol 1 0.500231644224087 1 0.999536711551826 hm5C_site_27365 DeepMRMD:1;iRNA_m5C:0.999536711551826 27366 chr1 24996713 24996713 1 + C T LUAD 24996698 + 24996678 24996718 41 GAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGT GAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCTCCCGT < 41bp 1 0.174288350354584 1 0.0987176597118378 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996698 chr1:24996713 synonymous SNV . 0 36 hm5C_associated_SNPs_26856 0 0 1 0 0 Cytosol 1 0.500231643654871 1 0.999536712690258 hm5C_site_27366 DeepMRMD:1;iRNA_m5C:0.999536712690258 27367 chr1 24996713 24996713 1 + C T LUAD 24996703 + 24996683 24996723 41 AGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGT AGCAGCTAAAAAGCCCCCAGCACCTCCATCTCCCGTCCAGT < 41bp 1 0.217021165874596 1 0.0896086990833282 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996703 chr1:24996713 synonymous SNV . 0 31 hm5C_associated_SNPs_26857 0 0 1 0 0 Cytosol 1 0.500231643922467 1 0.999536712155066 hm5C_site_27367 DeepMRMD:1;iRNA_m5C:0.999536712155066 27368 chr1 24996713 24996713 1 + C T LUAD 24996705 + 24996685 24996725 41 CAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCT CAGCTAAAAAGCCCCCAGCACCTCCATCTCCCGTCCAGTCT < 41bp 1 0.0485852193827038 1 0.0169703364372253 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996705 chr1:24996713 synonymous SNV . 0 29 hm5C_associated_SNPs_26858 0 0 1 0 0 Cytosol 1 0.500231638003781 1 0.999536723992438 hm5C_site_27368 DeepMRMD:1;iRNA_m5C:0.999536723992438 27369 chr1 24996713 24996713 1 + C T LUAD 24996709 + 24996689 24996729 41 TAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCTCAGT TAAAAAGCCCCCAGCACCTCCATCTCCCGTCCAGTCTCAGT < 41bp 1 0.0815502745162708 1 0.0819051563739777 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996709 chr1:24996713 synonymous SNV . 0 25 hm5C_associated_SNPs_26859 0 0 1 0 0 Cytosol 1 0.500229463472837 1 0.999541073054326 hm5C_site_27369 DeepMRMD:1;iRNA_m5C:0.999541073054326 27370 chr14 23778060 23778060 1 + G T LUAD 23778051 + 23778031 23778071 41 TTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGCGCG TTCACAGCTCTATACGGGGACGGGGCCCTTGAGGAGGCGCG < 41bp 1 0.624308711841579 1 0.772989869117737 experiment 0.751382576316841 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCL2L2 ENSG00000129473 CDS Human protein_coding chr14:23778051 chr14:23778060 synonymous SNV . 0 30 hm5C_associated_SNPs_26860 0 0 1 0 1 Cytosol 1 0.50023164392109 0.454020261764526 0.99953671215782 hm5C_site_27370 DeepMRMD:0.454020261764526;iRNA_m5C:0.99953671215782 27371 chr12 98927619 98927619 1 + A T LUAD 98927615 + 98927595 98927635 41 TCCAGTTTCTTCCAGGGAGGCAACACAGATATTATCAGTTC TCCAGTTTCTTCCAGGGAGGCAACTCAGATATTATCAGTTC < 41bp 1 0.202963477512295 1 0.103930860757828 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98927615 chr12:98927619 synonymous SNV . 0 25 hm5C_associated_SNPs_26861 0 0 1 0 0 Ribosome 1 0.50023182374137 1 0.99953635251726 hm5C_site_27371 DeepMRMD:1;iRNA_m5C:0.99953635251726 27372 chrX 117959242 117959242 1 + G A LUAD 117959256 + 117959236 117959276 41 ACAGCCGGCGGCTGAATGCACCCTTGCCGCCTTGGGCCCAT ACAGCCAGCGGCTGAATGCACCCTTGCCGCCTTGGGCCCAT < 41bp 1 0.400698519172313 1 0.0247774720191956 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZCCHC12 ENSG00000174460 CDS Human protein_coding chrX:117959256 chrX:117959242 nonsynonymous SNV 0.481 3 7 hm5C_associated_SNPs_26862 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27372 DeepMRMD:1;iRNA_m5C:0.999536712157815 27373 chr1 156351617 156351617 1 + G A LUAD 156351618 + 156351598 156351638 41 TCCACATCCAAAATGCAGCGCTGGCTGGAGGGGTTGTGGTG TCCACATCCAAAATGCAGCACTGGCTGGAGGGGTTGTGGTG < 41bp 1 0.415897225750751 1 0.0901186168193817 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHBG ENSG00000132677 CDS Human protein_coding chr1:156351618 chr1:156351617 synonymous SNV . 0 20 hm5C_associated_SNPs_26863 0 0 0 0 1 Cytosol 1 0.500231643931419 1 0.999536712137161 hm5C_site_27373 DeepMRMD:1;iRNA_m5C:0.999536712137161 27374 chr1 228879188 228879188 1 + G T LUAD 228879178 + 228879158 228879198 41 CACTGTCCCAAAGCCCCCATCATCCTAGTTGGAACGCAGTC CACTGTCCCAAAGCCCCCATCATCCTAGTTTGAACGCAGTC < 41bp 1 0.0927150740442737 1 0.262255787849426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOU ENSG00000116574 CDS Human protein_coding chr1:228879178 chr1:228879188 stopgain 0.421 1 31 hm5C_associated_SNPs_26864 0 0 1 0 0 Ribosome 1 0.500231643921157 1 0.999536712157686 hm5C_site_27374 DeepMRMD:1;iRNA_m5C:0.999536712157686 27375 chr9 104307066 104307066 1 + G C LUAD 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTGATAGTGGAGCAAGCAGTGCAGGAGCTGAACTCTT < 41bp 1 0.335014146813388 1 0.590889394283295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307066 nonsynonymous SNV 0.999 3 17 hm5C_associated_SNPs_26865 0 0 1 0 1 nucleus 1 0.500231643921092 0.81822121143341 0.999536712157815 hm5C_site_27375 DeepMRMD:0.81822121143341;iRNA_m5C:0.999536712157815 27376 chr7 79842052 79842052 1 + G A LUAD 79842035 + 79842015 79842055 41 ATTTTTTTCTATTACAGAACCGAATGCATGAAAGCATGAAA ATTTTTTTCTATTACAGAACCGAATGCATGAAAGCATAAAA < 41bp 1 0.179108118382929 1 0.194645375013351 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842035 chr7:79842052 nonsynonymous SNV 0.998 3 38 hm5C_associated_SNPs_26866 0 0 0 0 1 Cytosol 1 0.50023164392097 1 0.999536712158061 hm5C_site_27376 DeepMRMD:1;iRNA_m5C:0.999536712158061 27377 chr21 30714991 30714991 1 + G T LUAD 30714981 + 30714961 30715001 41 CTGACCGGCCTCCAGCAGTGCTGCCTCCCTGTGCCAGAGGA CTGACCGGCCTCCAGCAGTGCTGCCTCCCTTTGCCAGAGGA < 41bp 1 0.252048753128375 1 0.129277050495148 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BACH1 ENSG00000156273 CDS Human protein_coding chr21:30714981 chr21:30714991 nonsynonymous SNV 0.002 1 31 hm5C_associated_SNPs_26867 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_27377 DeepMRMD:1;iRNA_m5C:0.999536712157813 27378 chr1 154988888 154988888 1 + C G LUAD 154988871 + 154988851 154988891 41 AGGCTTTCGCCAAGGAGGACCACCTGCAGCGCCACCTCAAA AGGCTTTCGCCAAGGAGGACCACCTGCAGCGCCACCTGAAA < 41bp 1 0.232722388928835 1 0.182248741388321 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154988871 chr1:154988888 synonymous SNV . 0 38 hm5C_associated_SNPs_26868 0 0 1 0 0 chromatin 1 0.500231882778166 1 0.999536234443668 hm5C_site_27378 DeepMRMD:1;iRNA_m5C:0.999536234443668 27379 chr7 73636006 73636006 1 + C G LUAD 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGTATTACAACTGGGGGCGGTTGTCGAAGCCCCCAGAA < 41bp 1 0.278405795156804 1 0.217820405960083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73636006 nonsynonymous SNV 0.021 0 26 hm5C_associated_SNPs_26869 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27379 DeepMRMD:1;iRNA_m5C:0.999536712157815 27380 chr7 73636006 73636006 1 + C G LUAD 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAG < 41bp 1 0.159701956996446 1 0.225163459777832 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636006 nonsynonymous SNV 0.021 0 14 hm5C_associated_SNPs_26870 0 0 1 0 2 chromatin 1 0.500231643921017 1 0.999536712157965 hm5C_site_27380 DeepMRMD:1;iRNA_m5C:0.999536712157965 27381 chr7 73636006 73636006 1 + C G LUAD 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAGG < 41bp 1 0.510654408800234 1 0.277088284492493 experiment 0.978691182399532 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636006 nonsynonymous SNV 0.021 0 13 hm5C_associated_SNPs_26871 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_27381 DeepMRMD:1;iRNA_m5C:0.999536712157815 27382 chr7 73636006 73636006 1 + C G LUAD 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAGGA < 41bp 1 0.254429826422502 1 0.262844771146774 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636006 nonsynonymous SNV 0.021 0 12 hm5C_associated_SNPs_26872 0 0 1 0 2 chromatin 1 0.500231643921085 1 0.999536712157829 hm5C_site_27382 DeepMRMD:1;iRNA_m5C:0.999536712157829 27383 chr7 73636006 73636006 1 + C G LUAD 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC < 41bp 1 0.518321062691334 1 0.400747030973434 experiment 0.963357874617333 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636006 nonsynonymous SNV 0.021 0 11 hm5C_associated_SNPs_26873 0 0 1 0 2 chromatin 1 0.500231643901488 1 0.999536712197024 hm5C_site_27383 DeepMRMD:1;iRNA_m5C:0.999536712197024 27384 chr7 73636006 73636006 1 + C G LUAD 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGCGGTTGTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA < 41bp 1 0.674297213143472 1 0.793518602848053 experiment 0.651405573713055 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636006 nonsynonymous SNV 0.021 0 10 hm5C_associated_SNPs_26874 0 0 1 0 2 chromatin 1 0.500231643921603 0.412962794303894 0.999536712156794 hm5C_site_27384 DeepMRMD:0.412962794303894;iRNA_m5C:0.999536712156794 27385 chr2 211525369 211525369 1 + T C LUAD 211525357 + 211525337 211525377 41 ATTGGACCATCCCATAATTCCTGCTGACTATGTTGCAATTA ATTGGACCATCCCATAATTCCTGCTGACTATGCTGCAATTA < 41bp 1 0.301778374458492 1 0.0780095756053925 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211525357 chr2:211525369 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_26875 0 0 0 0 1 Nucleus 1 0.499767817868469 1 1 hm5C_site_27385 DeepMRMD:1;iRNA_m5C:1 27386 chr20 9376236 9376236 1 + A G LUAD 9376240 + 9376220 9376260 41 CCAGCAAACATCTTAGAGGACGATAATGAAGAGGAGATCGA CCAGCAAACATCTTAGGGGACGATAATGAAGAGGAGATCGA < 41bp 1 0.233297620540494 1 0.170118242502213 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9376240 chr20:9376236 nonsynonymous SNV 0.976 0 17 hm5C_associated_SNPs_26876 0 0 0 0 2 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27386 DeepMRMD:1;iRNA_m5C:0.999536712157815 27387 chr18 13056511 13056511 1 + G T LUAD 13056496 + 13056476 13056516 41 ATCCAGCTGTTGCAGGAGAGCCTGTGCAGAACTCTGTGGCT ATCCAGCTGTTGCAGGAGAGCCTGTGCAGAACTCTTTGGCT < 41bp 1 0.129764983315421 1 0.206546545028687 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056496 chr18:13056511 nonsynonymous SNV 0.181 0 36 hm5C_associated_SNPs_26878 0 0 1 0 0 Nucleus 1 0.500231636209267 1 0.999536727581465 hm5C_site_27387 DeepMRMD:1;iRNA_m5C:0.999536727581465 27388 chr6 30593483 30593483 1 + G T LUAD 30593484 + 30593464 30593504 41 CATCTCCAAGAAGAGAGTGGCCCCCCACCTGAGTCAATGCC CATCTCCAAGAAGAGAGTGTCCCCCCACCTGAGTCAATGCC < 41bp 1 0.148513624773053 1 0.0547684133052826 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS18B ENSG00000204568 CDS Human protein_coding chr6:30593484 chr6:30593483 nonsynonymous SNV 0.993 4 20 hm5C_associated_SNPs_26879 0 0 1 0 0 Cytosol 1 0.500231645289486 1 0.999536709421027 hm5C_site_27388 DeepMRMD:1;iRNA_m5C:0.999536709421027 27389 chr22 32498113 32498113 1 + C T LUAD 32498104 + 32498084 32498124 41 GGGAGCTGCATGGAGCCCAGCAACTGTCCCACGATTATCTG GGGAGCTGCATGGAGCCCAGCAACTGTCCTACGATTATCTG < 41bp 1 0.270761280277202 1 0.166687935590744 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32498104 chr22:32498113 synonymous SNV . 0 30 hm5C_associated_SNPs_26880 0 0 0 0 0 Nucleus 1 0.500231643921763 1 0.999536712156474 hm5C_site_27389 DeepMRMD:1;iRNA_m5C:0.999536712156474 27390 chr19 39592142 39592142 1 + C A LUAD 39592152 + 39592132 39592172 41 CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGGAT CTACACCAACACGCGAGGGCCTGTCCACATCATCACAGGAT < 41bp 1 0.0786667020211188 1 0.1980339884758 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592152 chr19:39592142 nonsynonymous SNV 0.387 2 11 hm5C_associated_SNPs_26881 0 0 0 0 2 exosome 1 0.500231644452949 1 0.999536711094103 hm5C_site_27390 DeepMRMD:1;iRNA_m5C:0.999536711094103 27391 chr11 76892595 76892595 1 + G T LUAD 76892615 + 76892595 76892635 41 GCCTGCCAGGCCAGGAGGGCCAGGCACCTAGTGGCTTTGAG TCCTGCCAGGCCAGGAGGGCCAGGCACCTAGTGGCTTTGAG < 41bp 1 0.258906928458949 1 0.542211592197418 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO7A ENSG00000137474 CDS Human protein_coding chr11:76892615 chr11:76892595 nonsynonymous SNV 0.973 2 1 hm5C_associated_SNPs_26882 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 0.915576815605164 0.999536712157814 hm5C_site_27391 DeepMRMD:0.915576815605164;iRNA_m5C:0.999536712157814 27392 chrX 12838875 12838875 1 + A G LUAD 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAGACACAA < 41bp 1 0.344119410703447 1 0.0828023850917816 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838875 nonsynonymous SNV 0.807 1 35 hm5C_associated_SNPs_26883 0 0 1 0 1 Ribosome 1 0.500231644484681 1 0.999536711030638 hm5C_site_27392 DeepMRMD:1;iRNA_m5C:0.999536711030638 27393 chrX 73046729 73046729 1 + C A LUAD 73046709 - 73046689 73046729 41 GGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC TGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC < 41bp 1 0.253236010065341 1 0.207433670759201 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046709 chrX:73046729 . . 0 1 hm5C_associated_SNPs_26884 0 0 1 1 0 unknown 1 0.500231604329393 1 0.999536791341214 hm5C_site_27393 DeepMRMD:1;iRNA_m5C:0.999536791341214 27394 chrX 73046729 73046729 1 + C A LUAD 73046721 - 73046701 73046741 41 TCTTAAGACCTGGGACAGGACACATGGAAGGCCTAAGAACT TCTTAAGACCTGTGACAGGACACATGGAAGGCCTAAGAACT < 41bp 1 0.187865674847579 1 0.145899832248688 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046721 chrX:73046729 . . 0 13 hm5C_associated_SNPs_26885 0 0 1 1 0 unknown 1 0.500231643962336 1 0.999536712075328 hm5C_site_27394 DeepMRMD:1;iRNA_m5C:0.999536712075328 27395 chrX 73046729 73046729 1 + C A LUAD 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGAAGTCTTAAGACCTGTGACAGGACACATGGAAGGCCTAA < 41bp 1 0.669278914625833 1 0.755340218544006 experiment 0.661442170748334 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046729 . . 0 18 hm5C_associated_SNPs_26886 0 0 1 1 0 unknown 1 0.500231122778562 0.489319562911988 0.999537754442876 hm5C_site_27395 DeepMRMD:0.489319562911988;iRNA_m5C:0.999537754442876 27396 chr7 130021575 130021575 1 + C T LUAD 130021565 + 130021545 130021585 41 GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGA GGTCAAGATCTTTCTGGAGTCCCACGGCATTAGCTATGAGA < 41bp 1 0.136910710376864 1 0.127978831529617 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021565 chr7:130021575 synonymous SNV . 0 31 hm5C_associated_SNPs_26887 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164699933 1 0.999536706001339 hm5C_site_27396 DeepMRMD:1;iRNA_m5C:0.999536706001339 27397 chr7 130021575 130021575 1 + C T LUAD 130021566 + 130021546 130021586 41 GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGAC GTCAAGATCTTTCTGGAGTCCCACGGCATTAGCTATGAGAC < 41bp 1 0.319549204267606 1 0.543193399906158 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021566 chr7:130021575 synonymous SNV . 0 30 hm5C_associated_SNPs_26888 0 0 0 0 1 Endoplasmic reticulum 1 0.500233760549917 0.913613200187684 0.999532478900166 hm5C_site_27397 DeepMRMD:0.913613200187684;iRNA_m5C:0.999532478900166 27398 chr7 130021575 130021575 1 + C T LUAD 130021572 + 130021552 130021592 41 ATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT ATCTTTCTGGAGTCCCACGGCATTAGCTATGAGACCATGAT < 41bp 1 0.181630860277668 1 0.275574862957001 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021572 chr7:130021575 synonymous SNV . 0 24 hm5C_associated_SNPs_26891 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643854993 1 0.999536712290015 hm5C_site_27398 DeepMRMD:1;iRNA_m5C:0.999536712290015 27399 chr7 130021575 130021575 1 + C T LUAD 130021578 + 130021558 130021598 41 CTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGAGGA CTGGAGTCCCACGGCATTAGCTATGAGACCATGATCGAGGA < 41bp 1 0.530240858180629 1 0.214291274547577 experiment 0.939518283638742 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021578 chr7:130021575 synonymous SNV . 0 18 hm5C_associated_SNPs_26892 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644420371 1 0.999536711159258 hm5C_site_27399 DeepMRMD:1;iRNA_m5C:0.999536711159258 27400 chr7 130021575 130021575 1 + C T LUAD 130021586 + 130021566 130021606 41 CCACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGT CCACGGCATTAGCTATGAGACCATGATCGAGGACGTGCAGT < 41bp 1 0.1571571049147 1 0.0369171798229218 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021586 chr7:130021575 synonymous SNV . 0 10 hm5C_associated_SNPs_26893 0 0 0 0 1 Endoplasmic reticulum 1 0.500224951709674 1 0.999550096580653 hm5C_site_27400 DeepMRMD:1;iRNA_m5C:0.999550096580653 27401 chr7 130021575 130021575 1 + C T LUAD 130021587 + 130021567 130021607 41 CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTC CACGGCATTAGCTATGAGACCATGATCGAGGACGTGCAGTC < 41bp 1 0.694054659551088 1 0.205661237239838 experiment 0.611890680897824 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021587 chr7:130021575 synonymous SNV . 0 9 hm5C_associated_SNPs_26894 0 0 0 0 1 Endoplasmic reticulum 1 0.500231520205507 1 0.999536959588985 hm5C_site_27401 DeepMRMD:1;iRNA_m5C:0.999536959588985 27402 chr2 220346372 220346372 1 + A T LUAD 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACCTACCGCTGAAGAGACCCTAG < 41bp 1 0.0299356394784823 1 0.108028471469879 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346372 synonymous SNV . 0 28 hm5C_associated_SNPs_26895 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27402 DeepMRMD:1;iRNA_m5C:0.999536712157815 27403 chrX 73046730 73046730 1 + C A LUAD 73046721 - 73046701 73046741 41 TCTTAAGACCTGGGACAGGACACATGGAAGGCCTAAGAACT TCTTAAGACCTTGGACAGGACACATGGAAGGCCTAAGAACT < 41bp 1 0.183559814471757 1 0.0921216607093811 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046721 chrX:73046730 . . 0 12 hm5C_associated_SNPs_26896 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_27403 DeepMRMD:1;iRNA_m5C:0.999536712157815 27404 chrX 73046730 73046730 1 + C A LUAD 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGAAGTCTTAAGACCTTGGACAGGACACATGGAAGGCCTAA < 41bp 1 0.628800660398398 1 0.743398308753967 experiment 0.742398679203205 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046730 . . 0 17 hm5C_associated_SNPs_26897 0 0 1 0 0 unknown 1 0.500230757808326 0.513203382492066 0.999538484383348 hm5C_site_27404 DeepMRMD:0.513203382492066;iRNA_m5C:0.999538484383348 27405 chrX 129185893 129185893 1 + A T LUAD 129185891 + 129185871 129185911 41 ATCCTCCTGGGAGCTCAGATCAAGAAGGAGACGATCCGATG ATCCTCCTGGGAGCTCAGATCATGAAGGAGACGATCCGATG < 41bp 1 0.527379124883065 1 0.728589177131653 experiment 0.94524175023387 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185891 chrX:129185893 nonsynonymous SNV 0.987 1 23 hm5C_associated_SNPs_26898 0 0 1 0 2 Cytosol 1 0.500231643827134 0.542821645736694 0.999536712345731 hm5C_site_27405 DeepMRMD:0.542821645736694;iRNA_m5C:0.999536712345731 27406 chr20 37580937 37580937 1 + T G LUAD 37580957 + 37580937 37580977 41 TGGGCACCCCCCACCTGGAACTGTACTTGAGTGACTCACTT GGGGCACCCCCCACCTGGAACTGTACTTGAGTGACTCACTT < 41bp 1 0.354648467800093 1 0.163162618875504 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37580957 chr20:37580937 nonsynonymous SNV 0.771 1 1 hm5C_associated_SNPs_26899 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27406 DeepMRMD:1;iRNA_m5C:0.999536712157815 27407 chr19 40884020 40884020 1 + T G LUAD 40884016 + 40883996 40884036 41 TTTCCTGAGGGACTGGGACTCCCCTTACAGCCATGACCTTG TTTCCTGAGGGACTGGGACTCCCCGTACAGCCATGACCTTG < 41bp 1 0.64260454070162 1 0.434242725372314 experiment 0.714790918596759 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40884016 chr19:40884020 synonymous SNV . 0 25 hm5C_associated_SNPs_26900 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_27407 DeepMRMD:1;iRNA_m5C:0.999536712157815 27408 chr19 40884020 40884020 1 + T G LUAD 40884018 + 40883998 40884038 41 TCCTGAGGGACTGGGACTCCCCTTACAGCCATGACCTTGAC TCCTGAGGGACTGGGACTCCCCGTACAGCCATGACCTTGAC < 41bp 1 0.587588126702957 1 0.343061447143555 experiment 0.824823746594086 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40884018 chr19:40884020 synonymous SNV . 0 23 hm5C_associated_SNPs_26901 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_27408 DeepMRMD:1;iRNA_m5C:0.999536712157815 27409 chr9 78506251 78506251 1 + C T LUAD 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACTGTAT < 41bp 1 0.0429673173278457 1 0.033968061208725 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506251 nonsynonymous SNV 0.949 2 37 hm5C_associated_SNPs_26902 0 0 0 1 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27409 DeepMRMD:1;iRNA_m5C:0.999536712157815 27410 chr2 232576109 232576109 1 + G T LUAD 232576110 + 232576090 232576130 41 GGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTG GGCAGAAAATGGAAGAGACTCCCCTGCTAACGGGAATGCTG < 41bp 1 0.30139641999374 1 0.0378052592277527 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576110 chr2:232576109 nonsynonymous SNV 0.995 0 20 hm5C_associated_SNPs_26904 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27410 DeepMRMD:1;iRNA_m5C:0.999536712157815 27411 chr2 232576109 232576109 1 + G T LUAD 232576128 + 232576108 232576148 41 CGCCCCTGCTAACGGGAATGCTGTGAGTGTCTGCTTTGCTC CTCCCCTGCTAACGGGAATGCTGTGAGTGTCTGCTTTGCTC < 41bp 1 0.541199534491061 1 0.197065621614456 experiment 0.917600931017879 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576128 chr2:232576109 nonsynonymous SNV 0.995 0 2 hm5C_associated_SNPs_26905 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27411 DeepMRMD:1;iRNA_m5C:0.999536712157815 27412 chr12 95877025 95877025 1 + G T LUAD 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGGAGCAACTGGAAATAAGAAGAAAA < 41bp 1 0.327953889168768 1 0.335973143577576 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877025 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_26906 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27412 DeepMRMD:1;iRNA_m5C:0.999536712157815 27413 chr8 32613930 32613930 1 + G T LUAD 32613925 + 32613905 32613945 41 CCTTTCTTATGTCCAGGAAACAGCGGAAAAAGCTGCATGAC CCTTTCTTATGTCCAGGAAACAGCGTAAAAAGCTGCATGAC < 41bp 1 0.552564342596423 1 0.76359486579895 experiment 0.894871314807154 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NRG1 ENSG00000157168 CDS Human protein_coding chr8:32613925 chr8:32613930 synonymous SNV . 0 26 hm5C_associated_SNPs_26907 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921021 0.4728102684021 0.999536712157957 hm5C_site_27413 DeepMRMD:0.4728102684021;iRNA_m5C:0.999536712157957 27414 chr11 66625248 66625248 1 + C A LUAD 66625256 + 66625236 66625276 41 GCTGCTGCTGGCCAGTGGAGCGGCCGCCTGCCCGCTGCCCT GCTGCTGCTGGCAAGTGGAGCGGCCGCCTGCCCGCTGCCCT < 41bp 1 0.452833548301755 1 0.851622104644775 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66625256 chr11:66625248 synonymous SNV . 0 13 hm5C_associated_SNPs_26908 0 0 1 0 1 Ribosome 1 0.500231643921092 0.29675579071045 0.999536712157815 hm5C_site_27414 DeepMRMD:0.29675579071045;iRNA_m5C:0.999536712157815 27415 chr14 102478287 102478287 1 + A C LUAD 102478267 + 102478247 102478287 41 TGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGCA TGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGCC < 41bp 1 0.0274696006266708 1 0.150383681058884 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478267 chr14:102478287 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_26909 0 0 1 0 1 Cytosol 1 0.500231643921973 1 0.999536712156054 hm5C_site_27415 DeepMRMD:1;iRNA_m5C:0.999536712156054 27416 chr1 228526024 228526024 1 + G T LUAD 228526010 + 228525990 228526030 41 GCTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCC GCTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTTAGTTCC < 41bp 1 0.051900655959123 1 0.45332133769989 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526010 chr1:228526024 stopgain 0.362 1 35 hm5C_associated_SNPs_26911 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27416 DeepMRMD:1;iRNA_m5C:0.999536712157815 27417 chr1 228526024 228526024 1 + G T LUAD 228526011 + 228525991 228526031 41 CTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCC CTGTCACCTGAGTGGGGGGCCGCTGAGGCCCCTTAGTTCCC < 41bp 1 0.0658993180275881 1 0.610836029052734 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526011 chr1:228526024 stopgain 0.362 1 34 hm5C_associated_SNPs_26912 0 0 1 0 2 Ribosome 1 0.500231643921098 0.778327941894532 0.999536712157803 hm5C_site_27417 DeepMRMD:0.778327941894532;iRNA_m5C:0.999536712157803 27418 chr1 228526024 228526024 1 + G T LUAD 228526019 + 228525999 228526039 41 TGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGG TGAGTGGGGGGCCGCTGAGGCCCCTTAGTTCCCTGGGGAGG < 41bp 1 0.0570518984668709 1 0.178568124771118 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526019 chr1:228526024 stopgain 0.362 1 26 hm5C_associated_SNPs_26913 0 0 1 0 2 Ribosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_27418 DeepMRMD:1;iRNA_m5C:0.999536712157811 27419 chr1 228526024 228526024 1 + G T LUAD 228526020 + 228526000 228526040 41 GAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGC GAGTGGGGGGCCGCTGAGGCCCCTTAGTTCCCTGGGGAGGC < 41bp 1 0.0548786093690592 1 0.109577029943466 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526020 chr1:228526024 stopgain 0.362 1 25 hm5C_associated_SNPs_26914 0 0 1 0 2 Ribosome 1 0.500231643921041 1 0.999536712157917 hm5C_site_27419 DeepMRMD:1;iRNA_m5C:0.999536712157917 27420 chr1 228526024 228526024 1 + G T LUAD 228526021 + 228526001 228526041 41 AGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCT AGTGGGGGGCCGCTGAGGCCCCTTAGTTCCCTGGGGAGGCT < 41bp 1 0.0467527186070574 1 0.132697582244873 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526021 chr1:228526024 stopgain 0.362 1 24 hm5C_associated_SNPs_26915 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27420 DeepMRMD:1;iRNA_m5C:0.999536712157815 27421 chr1 228526024 228526024 1 + G T LUAD 228526022 + 228526002 228526042 41 GTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCTG GTGGGGGGCCGCTGAGGCCCCTTAGTTCCCTGGGGAGGCTG < 41bp 1 0.10348957647696 1 0.0921967625617981 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526022 chr1:228526024 stopgain 0.362 1 23 hm5C_associated_SNPs_26916 0 0 1 0 2 Ribosome 1 0.500231643921082 1 0.999536712157835 hm5C_site_27421 DeepMRMD:1;iRNA_m5C:0.999536712157835 27422 chr19 6374306 6374306 1 + C G LUAD 6374323 + 6374303 6374343 41 CCCCGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACC CCCGGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACC < 41bp 1 0.220207046916753 1 0.260754644870758 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALKBH7 ENSG00000125652 CDS Human protein_coding chr19:6374323 chr19:6374306 synonymous SNV . 0 4 hm5C_associated_SNPs_26917 0 0 1 0 2 Ribosome 1 0.500231644100475 1 0.999536711799049 hm5C_site_27422 DeepMRMD:1;iRNA_m5C:0.999536711799049 27423 chr20 31021429 31021429 1 + G T LUAD 31021436 + 31021416 31021456 41 CAGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCT CAGCACCCGACCTTGAGGGTCCCGAATTCCCAGTTGAGTCT < 41bp 1 0.484273292502818 1 0.108322203159332 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021436 chr20:31021429 synonymous SNV . 0 14 hm5C_associated_SNPs_26918 0 0 1 0 0 Nucleus 1 0.500231697465343 1 0.999536605069315 hm5C_site_27423 DeepMRMD:1;iRNA_m5C:0.999536605069315 27424 chr20 31021429 31021429 1 + G T LUAD 31021437 + 31021417 31021457 41 AGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCTG AGCACCCGACCTTGAGGGTCCCGAATTCCCAGTTGAGTCTG < 41bp 1 0.477591541834307 1 0.320657849311829 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021437 chr20:31021429 synonymous SNV . 0 13 hm5C_associated_SNPs_26919 0 0 1 0 0 Nucleus 1 0.500231643921103 1 0.999536712157794 hm5C_site_27424 DeepMRMD:1;iRNA_m5C:0.999536712157794 27425 chr2 32673983 32673983 1 + A C LUAD 32673982 + 32673962 32674002 41 GTCAGATGAAATTGATTTATCAGATGTCCTTTCAGGTAGTG GTCAGATGAAATTGATTTATCCGATGTCCTTTCAGGTAGTG < 41bp 1 0.062067376833789 1 0.195328921079636 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673982 chr2:32673983 synonymous SNV . 0 22 hm5C_associated_SNPs_26920 0 0 1 0 1 Nucleus 1 0.500232037841247 1 0.999535924317507 hm5C_site_27425 DeepMRMD:1;iRNA_m5C:0.999535924317507 27426 chr2 32673983 32673983 1 + A C LUAD 32673989 + 32673969 32674009 41 GAAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTT GAAATTGATTTATCCGATGTCCTTTCAGGTAGTGATTTCTT < 41bp 1 0.00561837743463024 1 0.0218217074871063 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673989 chr2:32673983 synonymous SNV . 0 15 hm5C_associated_SNPs_26921 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_27426 DeepMRMD:1;iRNA_m5C:0.999536712157815 27427 chr2 32673983 32673983 1 + A C LUAD 32673990 + 32673970 32674010 41 AAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTT AAATTGATTTATCCGATGTCCTTTCAGGTAGTGATTTCTTT < 41bp 1 0.00801060042504494 1 0.0855082273483276 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673990 chr2:32673983 synonymous SNV . 0 14 hm5C_associated_SNPs_26922 0 0 1 0 1 Nucleus 1 0.500231643896913 1 0.999536712206174 hm5C_site_27427 DeepMRMD:1;iRNA_m5C:0.999536712206174 27428 chr2 32673983 32673983 1 + A C LUAD 32673994 + 32673974 32674014 41 TGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTTTATT TGATTTATCCGATGTCCTTTCAGGTAGTGATTTCTTTTATT < 41bp 1 0.180167271372585 1 0.181774944067001 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673994 chr2:32673983 synonymous SNV . 0 10 hm5C_associated_SNPs_26923 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_27428 DeepMRMD:1;iRNA_m5C:0.999536712157816 27429 chr3 51673485 51673485 1 + G T LUAD 51673466 + 51673446 51673486 41 CCCTGATGTGCTGTATGAAGCCCTTCAGAAGGAGAGCTTGG CCCTGATGTGCTGTATGAAGCCCTTCAGAAGGAGAGCTTTG < 41bp 1 0.211397944806992 1 0.114360451698303 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51673466 chr3:51673485 nonsynonymous SNV 0.950 3 40 hm5C_associated_SNPs_26924 0 0 1 0 1 chromatin 1 0.500231643918516 1 0.999536712162967 hm5C_site_27429 DeepMRMD:1;iRNA_m5C:0.999536712162967 27430 chr12 64173835 64173835 1 + G C LUAD 64173833 + 64173813 64173853 41 TACCACGTCTTCTTCGGGCGCCGCCGCCAGGCGCCGGCCGG TACCACGTCTTCTTCGGGCGCCCCCGCCAGGCGCCGGCCGG < 41bp 1 0.336719157007447 1 0.0329951345920563 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64173833 chr12:64173835 nonsynonymous SNV 0.882 2 23 hm5C_associated_SNPs_26925 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_27430 DeepMRMD:1;iRNA_m5C:0.999536712157816 27431 chr16 57485061 57485061 1 + G T LUAD 57485048 + 57485028 57485068 41 GAAGCAGCAGCCTCCCAACTCATTTTCTCAGCAGCATTCTG GAAGCAGCAGCCTCCCAACTCATTTTCTCAGCATCATTCTG < 41bp 1 0.12703681767484 1 0.0459785461425781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57485048 chr16:57485061 nonsynonymous SNV 0.999 0 34 hm5C_associated_SNPs_26926 0 0 1 0 1 Ribosome 1 0.500231643920681 1 0.999536712158638 hm5C_site_27431 DeepMRMD:1;iRNA_m5C:0.999536712158638 27432 chr1 163310200 163310200 1 + A G LUAD 163310211 + 163310191 163310231 41 ATATTTCAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT ATATTTCAGGGAAAACCAAGCGTTTGGTAAACATCTTTTCT < 41bp 1 0.072307581970671 1 0.0905514657497406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310211 chr1:163310200 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_26928 0 0 1 0 2 Cytosol 1 0.50023164392516 1 0.999536712149679 hm5C_site_27432 DeepMRMD:1;iRNA_m5C:0.999536712149679 27433 chr9 35389884 35389884 1 + G T LUAD 35389874 + 35389854 35389894 41 ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAACCTGGATT ACCTCCAGAGGAACAAGGGCCCAGCATTCGTAACCTGGATT < 41bp 1 0.0659123875979797 1 0.14843624830246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UNC13B ENSG00000198722 CDS Human protein_coding chr9:35389874 chr9:35389884 synonymous SNV . 0 31 hm5C_associated_SNPs_26929 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27433 DeepMRMD:1;iRNA_m5C:0.999536712157815 27434 chr5 137680774 137680774 1 + G T LUAD 137680783 + 137680763 137680803 41 GCTGGCAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGG GCTGGCAGCCGTTGTGGCGGCCCGCCCCCTCCAAGCTGTGG < 41bp 1 0.167272316727122 1 0.363211214542389 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680783 chr5:137680774 nonsynonymous SNV 0.991 0 12 hm5C_associated_SNPs_26930 0 0 1 0 0 chromatin 1 0.500231567555863 1 0.999536864888275 hm5C_site_27434 DeepMRMD:1;iRNA_m5C:0.999536864888275 27435 chr5 137680774 137680774 1 + G T LUAD 137680784 + 137680764 137680804 41 CTGGCAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGA CTGGCAGCCGTTGTGGCGGCCCGCCCCCTCCAAGCTGTGGA < 41bp 1 0.0777785024324397 1 0.149895578622818 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680784 chr5:137680774 nonsynonymous SNV 0.991 0 11 hm5C_associated_SNPs_26931 0 0 1 0 0 chromatin 1 0.500231714389518 1 0.999536571220964 hm5C_site_27435 DeepMRMD:1;iRNA_m5C:0.999536571220964 27436 chr5 137680774 137680774 1 + G T LUAD 137680785 + 137680765 137680805 41 TGGCAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGAC TGGCAGCCGTTGTGGCGGCCCGCCCCCTCCAAGCTGTGGAC < 41bp 1 0.335786467990211 1 0.560323178768158 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680785 chr5:137680774 nonsynonymous SNV 0.991 0 10 hm5C_associated_SNPs_26932 0 0 1 0 0 chromatin 1 0.500231643387754 0.879353642463684 0.999536713224491 hm5C_site_27436 DeepMRMD:0.879353642463684;iRNA_m5C:0.999536713224491 27437 chr5 137680774 137680774 1 + G T LUAD 137680787 + 137680767 137680807 41 GCAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTC GCAGCCGTTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTC < 41bp 1 0.23464508207094 1 0.0618569254875183 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680787 chr5:137680774 nonsynonymous SNV 0.991 0 8 hm5C_associated_SNPs_26933 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_27437 DeepMRMD:1;iRNA_m5C:0.999536712157816 27438 chr5 137680774 137680774 1 + G T LUAD 137680788 + 137680768 137680808 41 CAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCC CAGCCGTTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCC < 41bp 1 0.151664211923609 1 0.216902434825897 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680788 chr5:137680774 nonsynonymous SNV 0.991 0 7 hm5C_associated_SNPs_26934 0 0 1 0 0 chromatin 1 0.500231643920965 1 0.999536712158071 hm5C_site_27438 DeepMRMD:1;iRNA_m5C:0.999536712158071 27439 chr5 137680774 137680774 1 + G T LUAD 137680789 + 137680769 137680809 41 AGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCCC AGCCGTTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCCC < 41bp 1 0.0771230397929036 1 0.0661748051643372 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680789 chr5:137680774 nonsynonymous SNV 0.991 0 6 hm5C_associated_SNPs_26935 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27439 DeepMRMD:1;iRNA_m5C:0.999536712157815 27440 chr5 137680774 137680774 1 + G T LUAD 137680790 + 137680770 137680810 41 GCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCCCA GCCGTTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCCCA < 41bp 1 0.0760738223321842 1 0.182322174310684 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680790 chr5:137680774 nonsynonymous SNV 0.991 0 5 hm5C_associated_SNPs_26936 0 0 1 0 0 chromatin 1 0.500231643920718 1 0.999536712158564 hm5C_site_27440 DeepMRMD:1;iRNA_m5C:0.999536712158564 27441 chr5 137680774 137680774 1 + G T LUAD 137680793 + 137680773 137680813 41 GGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCCCATAA GTTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCCCATAA < 41bp 1 0.503330107441312 1 0.801402032375336 experiment 0.993339785117377 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680793 chr5:137680774 nonsynonymous SNV 0.991 0 2 hm5C_associated_SNPs_26938 0 0 1 0 0 chromatin 1 0.500231643921092 0.397195935249328 0.999536712157815 hm5C_site_27441 DeepMRMD:0.397195935249328;iRNA_m5C:0.999536712157815 27442 chr5 137680774 137680774 1 + G T LUAD 137680794 + 137680774 137680814 41 GTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCCCATAAA TTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCCCATAAA < 41bp 1 0.599462573177636 1 0.465529561042786 experiment 0.801074853644728 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680794 chr5:137680774 nonsynonymous SNV 0.991 0 1 hm5C_associated_SNPs_26939 0 0 1 0 0 chromatin 1 0.50023164391742 1 0.99953671216516 hm5C_site_27442 DeepMRMD:1;iRNA_m5C:0.99953671216516 27443 chr20 32341111 32341111 1 + G T LUAD 32341105 + 32341085 32341125 41 TCCACCCCAGAGCCTGGGCCCCCCTGGGCGTCCCAACCCTG TCCACCCCAGAGCCTGGGCCCCCCTGTGCGTCCCAACCCTG < 41bp 1 0.284993028105249 1 0.0812804996967316 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32341105 chr20:32341111 nonsynonymous SNV 0.993 0 27 hm5C_associated_SNPs_26940 0 0 0 0 0 chromatin 1 0.500231643921413 1 0.999536712157175 hm5C_site_27443 DeepMRMD:1;iRNA_m5C:0.999536712157175 27444 chr19 1461077 1461077 1 + C T LUAD 1461096 + 1461076 1461116 41 ACATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG ATATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG < 41bp 1 0.234591497612898 1 0.35846009850502 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC2 ENSG00000115266 CDS Human protein_coding chr19:1461096 chr19:1461077 synonymous SNV . 0 2 hm5C_associated_SNPs_26941 0 0 0 0 2 nucleolus 1 0.500231640215368 1 0.999536719569264 hm5C_site_27444 DeepMRMD:1;iRNA_m5C:0.999536719569264 27445 chr22 32217522 32217522 1 + G C LUAD 32217507 + 32217487 32217527 41 GGGCCATCCGGAGAAGCCATCCAGATCCACCACCAGACCCG GGGCCATCCGGAGAAGCCATCCAGATCCACCACCACACCCG < 41bp 1 0.575306382498349 1 0.662481188774109 experiment 0.849387235003301 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32217507 chr22:32217522 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_26942 0 0 1 0 1 chromatin 1 0.500231149652406 0.675037622451782 0.999537700695188 hm5C_site_27445 DeepMRMD:0.675037622451782;iRNA_m5C:0.999537700695188 27446 chr1 110134755 110134755 1 + A T LUAD 110134762 + 110134742 110134782 41 GAGATCTATACTCACTTCACCTGTGCCACAGACACGAAGAA GAGATCTATACTCTCTTCACCTGTGCCACAGACACGAAGAA < 41bp 1 0.201613176366988 1 0.463473975658417 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GNAI3 ENSG00000065135 CDS Human protein_coding chr1:110134762 chr1:110134755 nonsynonymous SNV 0.988 5 14 hm5C_associated_SNPs_26943 0 0 1 0 1 Cytosol 1 0.500231642600248 1 0.999536714799504 hm5C_site_27446 DeepMRMD:1;iRNA_m5C:0.999536714799504 27447 chr11 46403644 46403644 1 + G T LUAD 46403637 + 46403617 46403657 41 CGAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCT CGAGGCTTCCTCCTCCTCACCCTCCTCTCCCTGCTGGCGCT < 41bp 1 0.0450546319791579 1 0.0429928302764893 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403637 chr11:46403644 nonsynonymous SNV 0.008 0 28 hm5C_associated_SNPs_26944 0 0 1 0 2 Ribosome 1 0.500231643919628 1 0.999536712160744 hm5C_site_27447 DeepMRMD:1;iRNA_m5C:0.999536712160744 27448 chr11 46403644 46403644 1 + G T LUAD 46403638 + 46403618 46403658 41 GAGGCTTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTC GAGGCTTCCTCCTCCTCACCCTCCTCTCCCTGCTGGCGCTC < 41bp 1 0.499097322178543 1 0.246678441762924 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403638 chr11:46403644 nonsynonymous SNV 0.008 0 27 hm5C_associated_SNPs_26945 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27448 DeepMRMD:1;iRNA_m5C:0.999536712157815 27449 chr11 46403644 46403644 1 + G T LUAD 46403643 + 46403623 46403663 41 TTCCTCCTCCTCACCCTCCTCGCCCTGCTGGCGCTCACCTC TTCCTCCTCCTCACCCTCCTCTCCCTGCTGGCGCTCACCTC < 41bp 1 0.513551201536859 1 0.887201905250549 experiment 0.972897596926282 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MDK ENSG00000110492 CDS Human protein_coding chr11:46403643 chr11:46403644 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_26946 0 0 1 0 2 Ribosome 1 0.500231643921092 0.225596189498902 0.999536712157815 hm5C_site_27449 DeepMRMD:0.225596189498902;iRNA_m5C:0.999536712157815 27450 chr2 46607448 46607448 1 + G T LUAD 46607459 + 46607439 46607479 41 GCCCCATCTGCCCCGAGGAGCGGCTCTTGGCGGAGAACCCA GCCCCATCTTCCCCGAGGAGCGGCTCTTGGCGGAGAACCCA < 41bp 1 0.403543106520757 1 0.372088521718979 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607459 chr2:46607448 nonsynonymous SNV 0.997 3 10 hm5C_associated_SNPs_26949 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_27450 DeepMRMD:1;iRNA_m5C:0.999536712157814 27451 chr16 11133682 11133682 1 + C T LUAD 11133688 + 11133668 11133708 41 AGACCACCTACAACCACCCGCTAGCTGAAAGACTCATCAGG AGACCACCTACAACTACCCGCTAGCTGAAAGACTCATCAGG < 41bp 1 0.10903385075541 1 0.238498270511627 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133688 chr16:11133682 nonsynonymous SNV 0.871 1 15 hm5C_associated_SNPs_26950 0 0 1 0 2 Cytosol 1 0.500231649917678 1 0.999536700164643 hm5C_site_27451 DeepMRMD:1;iRNA_m5C:0.999536700164643 27452 chr17 55191939 55191939 1 + G T LUAD 55191920 + 55191900 55191940 41 CACACACCCTACCTTCCACGCGCTGCGCAGCCTCGACCAGC CACACACCCTACCTTCCACGCGCTGCGCAGCCTCGACCATC < 41bp 1 0.285503267541843 1 0.0974894464015961 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191920 chr17:55191939 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_26951 0 0 1 1 0 Endoplasmic reticulum 1 0.500229767702361 1 0.999540464595279 hm5C_site_27452 DeepMRMD:1;iRNA_m5C:0.999540464595279 27453 chr2 27448030 27448030 1 + G T LUAD 27448037 + 27448017 27448057 41 TTGAGCTGACCGAGGATCGACGGGCCTTTGCTGCCAGAATG TTGAGCTGACCGATGATCGACGGGCCTTTGCTGCCAGAATG < 41bp 1 0.443304840309377 1 0.5816251039505 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448037 chr2:27448030 nonsynonymous SNV 0.111 5 14 hm5C_associated_SNPs_26952 0 0 1 0 1 Exosome 1 0.500231691998288 0.836749792099 0.999536616003423 hm5C_site_27453 DeepMRMD:0.836749792099;iRNA_m5C:0.999536616003423 27454 chr2 27448030 27448030 1 + G T LUAD 27448041 + 27448021 27448061 41 GCTGACCGAGGATCGACGGGCCTTTGCTGCCAGAATGGCAG GCTGACCGATGATCGACGGGCCTTTGCTGCCAGAATGGCAG < 41bp 1 0.0129828518496619 1 0.106659084558487 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448041 chr2:27448030 nonsynonymous SNV 0.111 5 10 hm5C_associated_SNPs_26953 0 0 1 0 1 Exosome 1 0.500231644034708 1 0.999536711930585 hm5C_site_27454 DeepMRMD:1;iRNA_m5C:0.999536711930585 27455 chr2 27448030 27448030 1 + G T LUAD 27448047 + 27448027 27448067 41 CGAGGATCGACGGGCCTTTGCTGCCAGAATGGCAGAGATCG CGATGATCGACGGGCCTTTGCTGCCAGAATGGCAGAGATCG < 41bp 1 0.33301586126769 1 0.039919376373291 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448047 chr2:27448030 nonsynonymous SNV 0.111 5 4 hm5C_associated_SNPs_26954 0 0 1 0 1 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27455 DeepMRMD:1;iRNA_m5C:0.999536712157815 27456 chr9 133577570 133577570 1 + A T LUAD 133577577 + 133577557 133577597 41 CTGGTGAAACGGCAGAAGACCCACTTTCATGATTTGCCATG CTGGTGAAACGGCTGAAGACCCACTTTCATGATTTGCCATG < 41bp 1 0.327776907245198 1 0.0542184412479401 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133577577 chr9:133577570 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_26955 0 0 1 0 2 Ribosome 1 0.500231643946379 1 0.999536712107242 hm5C_site_27456 DeepMRMD:1;iRNA_m5C:0.999536712107242 27457 chr4 107268722 107268722 1 + G T LUAD 107268727 + 107268707 107268747 41 CTAAGAAGAAGATTTGGGAGCAGATCCAGCCTGATCTTCAC CTAAGAAGAAGATTTTGGAGCAGATCCAGCCTGATCTTCAC < 41bp 1 0.413400445557277 1 0.174658983945847 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107268727 chr4:107268722 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_26956 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27457 DeepMRMD:1;iRNA_m5C:0.999536712157815 27458 chr22 51160635 51160635 1 + C T LUAD 51160617 + 51160597 51160637 41 CAGCACCACGCCGCCTCTGCCGGGCTGGCCTCTGCCGCCGG CAGCACCACGCCGCCTCTGCCGGGCTGGCCTCTGCCGCTGG < 41bp 1 0.623146734504092 1 0.885106205940247 experiment 0.753706530991815 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51160617 chr22:51160635 synonymous SNV . 0 39 hm5C_associated_SNPs_26959 0 0 0 0 0 cytosol 1 0.500231630513255 0.229787588119506 0.999536738973489 hm5C_site_27458 DeepMRMD:0.229787588119506;iRNA_m5C:0.999536738973489 27459 chr3 169985727 169985727 1 + G T LUAD 169985728 + 169985708 169985748 41 ATCTACCGTAGAGGTGCACGCCGCTGGAGAAAGCTTTATTG ATCTACCGTAGAGGTGCACTCCGCTGGAGAAAGCTTTATTG < 41bp 1 0.528244991658253 1 0.591309249401093 experiment 0.943510016683494 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169985728 chr3:169985727 nonsynonymous SNV 0.985 4 20 hm5C_associated_SNPs_26960 0 0 1 0 1 Ribosome 1 0.500231643921046 0.817381501197814 0.999536712157908 hm5C_site_27459 DeepMRMD:0.817381501197814;iRNA_m5C:0.999536712157908 27460 chr2 105472206 105472206 1 + G T LUAD 105472216 + 105472196 105472236 41 CTTCATGCAGGGGGCCATGGCCGCCAGCAACGGCGGCCATA CTTCATGCAGTGGGCCATGGCCGCCAGCAACGGCGGCCATA < 41bp 1 0.233857575514632 1 0.053492397069931 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472216 chr2:105472206 nonsynonymous SNV 0.998 4 11 hm5C_associated_SNPs_26961 0 0 0 0 0 exosome 1 0.500231643731723 1 0.999536712536554 hm5C_site_27460 DeepMRMD:1;iRNA_m5C:0.999536712536554 27461 chr2 105472206 105472206 1 + G T LUAD 105472219 + 105472199 105472239 41 CATGCAGGGGGCCATGGCCGCCAGCAACGGCGGCCATATGC CATGCAGTGGGCCATGGCCGCCAGCAACGGCGGCCATATGC < 41bp 1 0.213754292431813 1 0.293055951595306 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472219 chr2:105472206 nonsynonymous SNV 0.998 4 8 hm5C_associated_SNPs_26963 0 0 0 0 0 exosome 1 0.500231341715655 1 0.99953731656869 hm5C_site_27461 DeepMRMD:1;iRNA_m5C:0.99953731656869 27462 chr2 105472206 105472206 1 + G T LUAD 105472220 + 105472200 105472240 41 ATGCAGGGGGCCATGGCCGCCAGCAACGGCGGCCATATGCT ATGCAGTGGGCCATGGCCGCCAGCAACGGCGGCCATATGCT < 41bp 1 0.575399070422086 1 0.469425857067108 experiment 0.849201859155828 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472220 chr2:105472206 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_26964 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27462 DeepMRMD:1;iRNA_m5C:0.999536712157815 27463 chr2 219538628 219538628 1 + G T LUAD 219538635 + 219538615 219538655 41 CAGACTATGCTGAGGGAGAGCTCTTTCAGATCCTAGAAGAT CAGACTATGCTGATGGAGAGCTCTTTCAGATCCTAGAAGAT < 41bp 1 0.0845793586839994 1 0.0925861895084381 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STK36 ENSG00000163482 CDS Human protein_coding chr2:219538635 chr2:219538628 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_26965 0 0 0 0 2 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_27463 DeepMRMD:1;iRNA_m5C:0.999536712157818 27464 chr2 32958931 32958931 1 + G T LUAD 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTTTATTGGAACGCCTGAAGATTTTCTATTGCTGT < 41bp 1 0.497115064889489 1 0.461005836725235 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958931 nonsynonymous SNV 0.731 0 9 hm5C_associated_SNPs_26966 0 0 0 0 2 Nucleus 1 0.500226769875719 1 0.999546460248563 hm5C_site_27464 DeepMRMD:1;iRNA_m5C:0.999546460248563 27465 chr16 77232110 77232110 1 + G A LUAD 77232113 + 77232093 77232133 41 GGGTGAAGAAAGAGGAGGACCGGCTCTTCATTCGTTACCCA GGGTGAAGAAAGAGGAGAACCGGCTCTTCATTCGTTACCCA < 41bp 1 0.642747980747102 1 0.3698810338974 experiment 0.714504038505796 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MON1B ENSG00000103111 CDS Human protein_coding chr16:77232113 chr16:77232110 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_26967 0 0 1 0 0 Ribosome 1 0.500231644151744 1 0.999536711696513 hm5C_site_27465 DeepMRMD:1;iRNA_m5C:0.999536711696513 27466 chr1 39927573 39927573 1 + T C LUAD 39927585 + 39927565 39927605 41 CACCAAGTTAGAGATGACTGCTGTGGCTGACATTTTCGACC CACCAAGTCAGAGATGACTGCTGTGGCTGACATTTTCGACC < 41bp 1 0.130682495559103 1 0.109137505292892 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39927585 chr1:39927573 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_26968 0 0 1 0 0 Endoplasmic reticulum 1 0.500192912769931 1 0.999614174460137 hm5C_site_27466 DeepMRMD:1;iRNA_m5C:0.999614174460137 27467 chr11 61404802 61404802 1 + G T LUAD 61404820 + 61404800 61404840 41 GAGGGTGTCCGCAATGTTGCCGGTGTCTGTCCGCAGATCCA GATGGTGTCCGCAATGTTGCCGGTGTCTGTCCGCAGATCCA < 41bp 1 0.470689788026269 1 0.71644002199173 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404820 chr11:61404802 . . 0 3 hm5C_associated_SNPs_26969 0 0 1 0 0 unknown 1 0.500231947578848 0.56711995601654 0.999536104842304 hm5C_site_27467 DeepMRMD:0.56711995601654;iRNA_m5C:0.999536104842304 27468 chr14 69704367 69704367 1 + G T LUAD 69704365 + 69704345 69704385 41 ACCACAACTCCCACGATGTGCTGCTGCTCTGCACCTCCTGC ACCACAACTCCCACGATGTGCTTCTGCTCTGCACCTCCTGC < 41bp 1 0.21529457356145 1 0.0327105224132538 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EXD2 ENSG00000081177 CDS Human protein_coding chr14:69704365 chr14:69704367 synonymous SNV . 0 23 hm5C_associated_SNPs_26970 0 0 1 0 1 Ribosome 1 0.500231645472953 1 0.999536709054094 hm5C_site_27468 DeepMRMD:1;iRNA_m5C:0.999536709054094 27469 chr17 79202797 79202797 1 + C T LUAD 79202783 - 79202763 79202803 41 AACATCGTCCCAGAGGACAGCAGCCAAAGAGCCTCCTGGCT AACATCATCCCAGAGGACAGCAGCCAAAGAGCCTCCTGGCT < 41bp 1 0.216418441534913 1 0.395446538925171 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79202783 chr17:79202797 synonymous SNV . 0 7 hm5C_associated_SNPs_26971 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27469 DeepMRMD:1;iRNA_m5C:0.999536712157815 27470 chrX 73045871 73045871 1 + G A LUAD 73045854 - 73045834 73045874 41 TCCCAAGGGGACAGCCTGAACTCCCTGCTCATAGTAGTGGC TCCTAAGGGGACAGCCTGAACTCCCTGCTCATAGTAGTGGC < 41bp 1 0.30977841975009 1 0.500613927841187 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045854 chrX:73045871 . . 0 4 hm5C_associated_SNPs_26972 0 0 1 0 0 unknown 1 0.500231643921092 0.998772144317626 0.999536712157815 hm5C_site_27470 DeepMRMD:0.998772144317626;iRNA_m5C:0.999536712157815 27471 chrX 73045871 73045871 1 + G A LUAD 73045859 - 73045839 73045879 41 CGAGGTCCCAAGGGGACAGCCTGAACTCCCTGCTCATAGTA CGAGGTCCTAAGGGGACAGCCTGAACTCCCTGCTCATAGTA < 41bp 1 0.426129235152107 1 0.617600202560425 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045859 chrX:73045871 . . 0 9 hm5C_associated_SNPs_26973 0 0 1 0 0 unknown 1 0.500231643921092 0.76479959487915 0.999536712157815 hm5C_site_27471 DeepMRMD:0.76479959487915;iRNA_m5C:0.999536712157815 27472 chrX 73045871 73045871 1 + G A LUAD 73045873 - 73045853 73045893 41 TGCCTGGGACAAAGCGAGGTCCCAAGGGGACAGCCTGAACT TGCCTGGGACAAAGCGAGGTCCTAAGGGGACAGCCTGAACT < 41bp 1 0.0881340616045856 1 0.137612968683243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045873 chrX:73045871 . . 0 23 hm5C_associated_SNPs_26974 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_27472 DeepMRMD:1;iRNA_m5C:0.999536712157815 27473 chrX 73045871 73045871 1 + G A LUAD 73045891 - 73045871 73045911 41 TTATGGAAAGGGTGACTGTGCCTGGGACAAAGCGAGGTCCC TTATGGAAAGGGTGACTGTGCCTGGGACAAAGCGAGGTCCT < 41bp 1 0.287604838864151 1 0.279087007045746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045891 chrX:73045871 . . 0 41 hm5C_associated_SNPs_26976 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_27473 DeepMRMD:1;iRNA_m5C:0.999536712157815 27474 chr3 53880624 53880624 1 + C T LUAD 53880614 + 53880594 53880634 41 GATCCCGCGCAGTGGCCCGGCGATGTCGCTCGTGCTGCTAA GATCCCGCGCAGTGGCCCGGCGATGTCGCTTGTGCTGCTAA < 41bp 1 0.617081785739095 1 0.445230931043625 experiment 0.76583642852181 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IL17RB ENSG00000056736 CDS Human protein_coding chr3:53880614 chr3:53880624 synonymous SNV . 0 31 hm5C_associated_SNPs_26977 0 0 1 0 1 Nucleus 1 0.500231643396826 1 0.999536713206348 hm5C_site_27474 DeepMRMD:1;iRNA_m5C:0.999536713206348 27475 chr20 62187854 62187854 1 + A G LUAD 62187844 + 62187824 62187864 41 GTCCGAAACCTGCTGCCCAACCGATCCTATAAGTTCACCAT GTCCGAAACCTGCTGCCCAACCGATCCTATGAGTTCACCAT < 41bp 1 0.207967109728669 1 0.283840745687485 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FNDC11 ENSG00000125531 CDS Human protein_coding chr20:62187844 chr20:62187854 nonsynonymous SNV 0.999 0 31 hm5C_associated_SNPs_26978 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27475 DeepMRMD:1;iRNA_m5C:0.999536712157815 27476 chr19 11145656 11145656 1 + G T LUAD 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TCATGGAGTAGGACGAGCTCCCCTCGTGGATCATCAAGGAC < 41bp 1 0.0721970144833732 1 0.0903445184230804 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145656 stopgain 0.995 1 9 hm5C_associated_SNPs_26979 0 0 1 0 1 Nucleus 1 0.500231648655351 1 0.999536702689297 hm5C_site_27476 DeepMRMD:1;iRNA_m5C:0.999536702689297 27477 chr19 11145656 11145656 1 + G T LUAD 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGGAGTAGGACGAGCTCCCCTCGTGGATCATCAAGGACG < 41bp 1 0.192915567862767 1 0.174806654453278 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145656 stopgain 0.995 1 8 hm5C_associated_SNPs_26980 0 0 1 0 1 Nucleus 1 0.500231639945625 1 0.99953672010875 hm5C_site_27477 DeepMRMD:1;iRNA_m5C:0.99953672010875 27478 chr19 11145656 11145656 1 + G T LUAD 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GGAGTAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG < 41bp 1 0.55159672696812 1 0.612375319004059 experiment 0.89680654606376 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145656 stopgain 0.995 1 5 hm5C_associated_SNPs_26981 0 0 1 0 1 Nucleus 1 0.500231643920106 0.775249361991882 0.999536712159788 hm5C_site_27478 DeepMRMD:0.775249361991882;iRNA_m5C:0.999536712159788 27479 chr19 11145655 11145655 1 + G T LUAD 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TCATGGATGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC < 41bp 1 0.0772295644053792 1 0.0706871747970581 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145655 nonsynonymous SNV 0.996 4 8 hm5C_associated_SNPs_26982 0 0 1 0 1 Nucleus 1 0.500230516191241 1 0.999538967617517 hm5C_site_27479 DeepMRMD:1;iRNA_m5C:0.999538967617517 27480 chr19 11145655 11145655 1 + G T LUAD 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGGATGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG < 41bp 1 0.178742711583674 1 0.10011750459671 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145655 nonsynonymous SNV 0.996 4 7 hm5C_associated_SNPs_26983 0 0 1 0 1 Nucleus 1 0.50023164328939 1 0.99953671342122 hm5C_site_27480 DeepMRMD:1;iRNA_m5C:0.99953671342122 27481 chr19 11145655 11145655 1 + G T LUAD 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GGATGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG < 41bp 1 0.589374658344933 1 0.453469425439835 experiment 0.821250683310135 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145655 nonsynonymous SNV 0.996 4 4 hm5C_associated_SNPs_26984 0 0 1 0 1 Nucleus 1 0.500231643897886 1 0.999536712204228 hm5C_site_27481 DeepMRMD:1;iRNA_m5C:0.999536712204228 27482 chr5 121786644 121786644 1 + C T LUAD 121786629 + 121786609 121786649 41 GACTACCCCAGTGAGGAAGGCTGACCGACCAAGGCCGCAGC GACTACCCCAGTGAGGAAGGCTGACCGACCAAGGCTGCAGC < 41bp 1 0.329096428954133 1 0.391337335109711 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786629 chr5:121786644 nonsynonymous SNV 0.886 4 36 hm5C_associated_SNPs_26985 0 0 0 0 0 exosome 1 0.500231643562604 1 0.999536712874793 hm5C_site_27482 DeepMRMD:1;iRNA_m5C:0.999536712874793 27483 chr4 3184081 3184081 1 + G C LUAD 3184095 + 3184075 3184115 41 TTATAGGTGTTGGAGATGTTCATTCTTGTCCTGCAGCAGTG TTATAGCTGTTGGAGATGTTCATTCTTGTCCTGCAGCAGTG < 41bp 1 0.0636055249846866 1 0.0918485522270203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3184095 chr4:3184081 nonsynonymous SNV 0.919 4 7 hm5C_associated_SNPs_26986 0 0 1 0 1 Cytosol 1 0.500231949826161 1 0.999536100347679 hm5C_site_27483 DeepMRMD:1;iRNA_m5C:0.999536100347679 27484 chr1 163310197 163310197 1 + C T LUAD 163310211 + 163310191 163310231 41 ATATTTCAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT ATATTTTAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT < 41bp 1 0.0556064990130887 1 0.0537252724170685 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310211 chr1:163310197 stopgain 1.000 2 7 hm5C_associated_SNPs_26987 0 0 1 0 2 Cytosol 1 0.50023164393763 1 0.99953671212474 hm5C_site_27484 DeepMRMD:1;iRNA_m5C:0.99953671212474 27485 chr1 70700421 70700421 1 + G T LUAD 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGGCTGCTTTGGGGGCTCCTACTCTTTATCCTGCCCTT < 41bp 1 0.289033506374179 1 0.10213178396225 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700421 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_26988 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27485 DeepMRMD:1;iRNA_m5C:0.999536712157815 27486 chr10 71712696 71712696 1 + C A LUAD 71712688 + 71712668 71712708 41 CCTAAAGGGGATAAGGGAGACCAAGGAGCGCCTGGATTAGA CCTAAAGGGGATAAGGGAGACCAAGGAGAGCCTGGATTAGA < 41bp 1 0.199616532733269 1 0.244180589914322 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71712688 chr10:71712696 nonsynonymous SNV 0.999 4 29 hm5C_associated_SNPs_26989 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27486 DeepMRMD:1;iRNA_m5C:0.999536712157815 27487 chr6 52269010 52269010 1 + C T LUAD 52269024 + 52269004 52269044 41 TGCCTGCAGTGCTGCCACCGCAGCCCTTCTGAGGCACAAAG TGCCTGTAGTGCTGCCACCGCAGCCCTTCTGAGGCACAAAG < 41bp 1 0.29734549134352 1 0.56585031747818 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAQR8 ENSG00000170915 CDS Human protein_coding chr6:52269024 chr6:52269010 synonymous SNV . 0 7 hm5C_associated_SNPs_26990 0 0 1 0 0 Ribosome 1 0.500231643921094 0.86829936504364 0.999536712157812 hm5C_site_27487 DeepMRMD:0.86829936504364;iRNA_m5C:0.999536712157812 27488 chr6 52269009 52269009 1 + G C LUAD 52269024 + 52269004 52269044 41 TGCCTGCAGTGCTGCCACCGCAGCCCTTCTGAGGCACAAAG TGCCTCCAGTGCTGCCACCGCAGCCCTTCTGAGGCACAAAG < 41bp 1 0.285030812596797 1 0.503486514091492 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAQR8 ENSG00000170915 CDS Human protein_coding chr6:52269024 chr6:52269009 nonsynonymous SNV 0.219 3 6 hm5C_associated_SNPs_26991 0 0 1 0 0 Ribosome 1 0.500231643920917 0.993026971817016 0.999536712158166 hm5C_site_27488 DeepMRMD:0.993026971817016;iRNA_m5C:0.999536712158166 27489 chr3 49679870 49679870 1 + G A LUAD 49679871 + 49679851 49679891 41 GACCAAGAGAGATCTCGGGGCCCAGGAGGACCACAGCCTGG GACCAAGAGAGATCTCGGGACCCAGGAGGACCACAGCCTGG < 41bp 1 0.140483939326502 1 0.331031143665314 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BSN ENSG00000164061 CDS Human protein_coding chr3:49679871 chr3:49679870 nonsynonymous SNV 0.900 1 20 hm5C_associated_SNPs_26992 0 0 0 0 0 chromatin 1 0.500231643540873 1 0.999536712918254 hm5C_site_27489 DeepMRMD:1;iRNA_m5C:0.999536712918254 27490 chr3 49679870 49679870 1 + G A LUAD 49679872 + 49679852 49679892 41 ACCAAGAGAGATCTCGGGGCCCAGGAGGACCACAGCCTGGG ACCAAGAGAGATCTCGGGACCCAGGAGGACCACAGCCTGGG < 41bp 1 0.275480011921529 1 0.514366865158081 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BSN ENSG00000164061 CDS Human protein_coding chr3:49679872 chr3:49679870 nonsynonymous SNV 0.900 1 19 hm5C_associated_SNPs_26993 0 0 0 0 0 chromatin 1 0.500231643921092 0.971266269683838 0.999536712157815 hm5C_site_27490 DeepMRMD:0.971266269683838;iRNA_m5C:0.999536712157815 27491 chr14 68042651 68042651 1 + C T LUAD 68042632 + 68042612 68042652 41 GACTATGAGGCTGGAGGAACCAGACGGTTGCTTTCCTCCCA GACTATGAGGCTGGAGGAACCAGACGGTTGCTTTCCTCCTA < 41bp 1 0.644865592978251 1 0.789763450622559 experiment 0.710268814043499 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042632 chr14:68042651 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_26995 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643819451 0.420473098754882 0.999536712361097 hm5C_site_27491 DeepMRMD:0.420473098754882;iRNA_m5C:0.999536712361097 27492 chr10 7842009 7842009 1 + A T LUAD 7841992 + 7841972 7842012 41 TGTTTTTGTCAATTCTAGGTCTGTCATCTCCTATAAGACAG TGTTTTTGTCAATTCTAGGTCTGTCATCTCCTATAAGTCAG < 41bp 1 0.161480296010834 1 0.0302459001541138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841992 chr10:7842009 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_26997 0 0 1 0 2 Ribosome 1 0.500232597654877 1 0.999534804690246 hm5C_site_27492 DeepMRMD:1;iRNA_m5C:0.999534804690246 27493 chr10 7842009 7842009 1 + A T LUAD 7841996 + 7841976 7842016 41 TTTGTCAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGA TTTGTCAATTCTAGGTCTGTCATCTCCTATAAGTCAGAAGA < 41bp 1 0.135889940977562 1 0.145016342401505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841996 chr10:7842009 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_26998 0 0 1 0 2 Ribosome 1 0.500231644141082 1 0.999536711717835 hm5C_site_27493 DeepMRMD:1;iRNA_m5C:0.999536711717835 27494 chr10 7842009 7842009 1 + A T LUAD 7841999 + 7841979 7842019 41 GTCAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAA GTCAATTCTAGGTCTGTCATCTCCTATAAGTCAGAAGAAAA < 41bp 1 0.404283974889063 1 0.242030799388885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7841999 chr10:7842009 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_26999 0 0 1 0 2 Ribosome 1 0.500231292118363 1 0.999537415763273 hm5C_site_27494 DeepMRMD:1;iRNA_m5C:0.999537415763273 27495 chr10 7842009 7842009 1 + A T LUAD 7842001 + 7841981 7842021 41 CAATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAAGC CAATTCTAGGTCTGTCATCTCCTATAAGTCAGAAGAAAAGC < 41bp 1 0.0577589198417755 1 0.21217542886734 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7842001 chr10:7842009 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_27000 0 0 1 0 2 Ribosome 1 0.500230968014696 1 0.999538063970609 hm5C_site_27495 DeepMRMD:1;iRNA_m5C:0.999538063970609 27496 chr10 7842009 7842009 1 + A T LUAD 7842002 + 7841982 7842022 41 AATTCTAGGTCTGTCATCTCCTATAAGACAGAAGAAAAGCC AATTCTAGGTCTGTCATCTCCTATAAGTCAGAAGAAAAGCC < 41bp 1 0.457246477619073 1 0.561216175556183 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7842002 chr10:7842009 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_27001 0 0 1 0 2 Ribosome 1 0.500231643892285 0.877567648887634 0.99953671221543 hm5C_site_27496 DeepMRMD:0.877567648887634;iRNA_m5C:0.99953671221543 27497 chr20 55088422 55088422 1 + G T LUAD 55088403 + 55088383 55088423 41 TTCCAGGAGGATGATGTCATCATGCTCAATGGCACCAAGGA TTCCAGGAGGATGATGTCATCATGCTCAATGGCACCAAGTA < 41bp 1 0.485559318324679 1 0.587419271469116 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55088403 chr20:55088422 stopgain 0.997 1 40 hm5C_associated_SNPs_27002 0 0 1 0 1 Ribosome 1 0.500231643944939 0.825161457061768 0.999536712110122 hm5C_site_27497 DeepMRMD:0.825161457061768;iRNA_m5C:0.999536712110122 27498 chr20 55088422 55088422 1 + G T LUAD 55088433 + 55088413 55088453 41 GGCACCAAGGAGGATGTGGACGTGCTGAAGACAAGGATGGA GGCACCAAGTAGGATGTGGACGTGCTGAAGACAAGGATGGA < 41bp 1 0.406897338208394 1 0.301292061805725 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55088433 chr20:55088422 stopgain 0.997 1 10 hm5C_associated_SNPs_27003 0 0 1 0 1 Ribosome 1 0.500231007036287 1 0.999537985927426 hm5C_site_27498 DeepMRMD:1;iRNA_m5C:0.999537985927426 27499 chrX 106884134 106884134 1 + C A LUAD 106884139 + 106884119 106884159 41 CCCCTCCATTTAGAGCCGGGCGCCAATCTCAGCCAAGCTTG CCCCTCCATTTAGAGACGGGCGCCAATCTCAGCCAAGCTTG < 41bp 1 0.622928035855964 1 0.217532992362976 experiment 0.754143928288072 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884139 chrX:106884134 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_27004 0 0 1 0 2 Ribosome 1 0.500231643920609 1 0.999536712158782 hm5C_site_27499 DeepMRMD:1;iRNA_m5C:0.999536712158782 27500 chr7 144060319 144060319 1 + G A LUAD 144060317 + 144060297 144060337 41 CAGACCAGATATTATTCTCCCTGCGAAGAGCATCCTGCAGA CAGACCAGATATTATTCTCCCTACGAAGAGCATCCTGCAGA < 41bp 1 0.285594137823633 1 0.175578504800797 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144060317 chr7:144060319 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_27006 0 0 0 0 0 exosome 1 0.500231643979923 1 0.999536712040155 hm5C_site_27500 DeepMRMD:1;iRNA_m5C:0.999536712040155 27501 chr16 31090472 31090472 1 + C T LUAD 31090458 + 31090438 31090478 41 ACCACTGCAGCTCTCGGAAGCAGAGCTGCTGAATCAGCTGC ACCACTGCAGCTCTCGGAAGCAGAGCTGCTGAATTAGCTGC < 41bp 1 0.5732530574458 1 0.850123882293701 experiment 0.853493885108401 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31090458 chr16:31090472 stopgain 0.995 0 35 hm5C_associated_SNPs_27007 0 0 0 0 0 Endoplasmic reticulum 1 0.500260411049849 0.299752235412598 0.999479177900302 hm5C_site_27501 DeepMRMD:0.299752235412598;iRNA_m5C:0.999479177900302 27502 chr16 31090472 31090472 1 + C T LUAD 31090463 + 31090443 31090483 41 TGCAGCTCTCGGAAGCAGAGCTGCTGAATCAGCTGCAGCGG TGCAGCTCTCGGAAGCAGAGCTGCTGAATTAGCTGCAGCGG < 41bp 1 0.350110849722998 1 0.128787666559219 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31090463 chr16:31090472 stopgain 0.995 0 30 hm5C_associated_SNPs_27008 0 0 0 0 0 Endoplasmic reticulum 1 0.500231642525484 1 0.999536714949031 hm5C_site_27502 DeepMRMD:1;iRNA_m5C:0.999536714949031 27503 chr11 110035186 110035186 1 + C G LUAD 110035177 + 110035157 110035197 41 CATGTCTAGAAATACGGCAGCCAAAACTGCAAACGAAGGAG CATGTCTAGAAATACGGCAGCCAAAACTGGAAACGAAGGAG < 41bp 1 0.18446736746345 1 0.374066770076752 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035177 chr11:110035186 nonsynonymous SNV 0.020 0 30 hm5C_associated_SNPs_27010 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_27503 DeepMRMD:1;iRNA_m5C:0.999536712157815 27504 chr11 110035186 110035186 1 + C G LUAD 110035178 + 110035158 110035198 41 ATGTCTAGAAATACGGCAGCCAAAACTGCAAACGAAGGAGG ATGTCTAGAAATACGGCAGCCAAAACTGGAAACGAAGGAGG < 41bp 1 0.481214736024744 1 0.493260562419891 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035178 chr11:110035186 nonsynonymous SNV 0.020 0 29 hm5C_associated_SNPs_27011 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157819 hm5C_site_27504 DeepMRMD:1;iRNA_m5C:0.999536712157819 27505 chr11 63585545 63585545 1 + G A LUAD 63585542 + 63585522 63585562 41 AAGAGCAATATCCTGGAGGCCTGGAGTGAAGGGGTGGCCCT AAGAGCAATATCCTGGAGGCCTGAAGTGAAGGGGTGGCCCT < 41bp 1 0.698215649192136 1 0.435242265462875 experiment 0.603568701615729 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C11orf84 ENSG00000168005 CDS Human protein_coding chr11:63585542 chr11:63585545 stopgain 0.995 1 24 hm5C_associated_SNPs_27012 0 0 1 0 1 Ribosome 1 0.500231586120999 1 0.999536827758001 hm5C_site_27505 DeepMRMD:1;iRNA_m5C:0.999536827758001 27506 chrX 70357597 70357597 1 + C T LUAD 70357578 + 70357558 70357598 41 TCTCCTTCTTCCCTCCAGGGCTATACTCCTTATGTTTCTCA TCTCCTTCTTCCCTCCAGGGCTATACTCCTTATGTTTCTTA < 41bp 1 0.105399212756113 1 0.0962234437465668 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70357578 chrX:70357597 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_27013 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27506 DeepMRMD:1;iRNA_m5C:0.999536712157815 27507 chr7 142460344 142460344 1 + G C LUAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAACCCTC < 41bp 1 0.354021886459449 1 0.224656224250793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460344 nonsynonymous SNV 0.269 1 37 hm5C_associated_SNPs_27014 0 0 0 0 2 Cytosol 1 0.50023239963747 1 0.99953520072506 hm5C_site_27507 DeepMRMD:1;iRNA_m5C:0.99953520072506 27508 chr7 142460344 142460344 1 + G C LUAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAACCCTCC < 41bp 1 0.569132298851223 1 0.731280207633972 experiment 0.861735402297555 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460344 nonsynonymous SNV 0.269 1 36 hm5C_associated_SNPs_27015 0 0 0 0 2 Cytosol 1 0.500231643297071 0.537439584732056 0.999536713405859 hm5C_site_27508 DeepMRMD:0.537439584732056;iRNA_m5C:0.999536713405859 27509 chr7 142460344 142460344 1 + G C LUAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAACCCTCCTACC < 41bp 1 0.389192461242368 1 0.143460869789124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460344 nonsynonymous SNV 0.269 1 32 hm5C_associated_SNPs_27016 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27509 DeepMRMD:1;iRNA_m5C:0.999536712157815 27510 chr7 142460344 142460344 1 + G C LUAD 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAACCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0403289954323466 1 0.147828161716461 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460344 nonsynonymous SNV 0.269 1 20 hm5C_associated_SNPs_27017 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27510 DeepMRMD:1;iRNA_m5C:0.999536712157815 27511 chr7 142460344 142460344 1 + G C LUAD 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAACCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.291750550475206 1 0.602536022663116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460344 nonsynonymous SNV 0.269 1 19 hm5C_associated_SNPs_27018 0 0 0 0 2 Cytosol 1 0.500231794043374 0.794927954673768 0.999536411913253 hm5C_site_27511 DeepMRMD:0.794927954673768;iRNA_m5C:0.999536411913253 27512 chr7 142460344 142460344 1 + G C LUAD 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAACCCTCCTACCCTGGAAAGATTACCA < 41bp 1 0.021748768161217 1 0.305579006671906 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460344 nonsynonymous SNV 0.269 1 17 hm5C_associated_SNPs_27019 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_27512 DeepMRMD:1;iRNA_m5C:0.999536712157817 27513 chr7 142460344 142460344 1 + G C LUAD 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAACCCTCCTACCCTGGAAAGATTACCAG < 41bp 1 0.191430482441547 1 0.229727685451508 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460344 nonsynonymous SNV 0.269 1 16 hm5C_associated_SNPs_27020 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27513 DeepMRMD:1;iRNA_m5C:0.999536712157815 27514 chr7 142460344 142460344 1 + G C LUAD 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAACCCTCCTACCCTGGAAAGATTACCAGCAA < 41bp 1 0.322672363154556 1 0.334576785564423 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460344 nonsynonymous SNV 0.269 1 13 hm5C_associated_SNPs_27021 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27514 DeepMRMD:1;iRNA_m5C:0.999536712157815 27515 chr7 142460344 142460344 1 + G C LUAD 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAACCCTCCTACCCTGGAAAGATTACCAGCAAC < 41bp 1 0.280775433015155 1 0.483967661857605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460344 nonsynonymous SNV 0.269 1 12 hm5C_associated_SNPs_27022 0 0 0 0 2 Cytosol 1 0.500231643921321 1 0.999536712157358 hm5C_site_27515 DeepMRMD:1;iRNA_m5C:0.999536712157358 27516 chr17 55183940 55183940 1 + C A LUAD 55183945 + 55183925 55183965 41 CGGTTGGCAAGGTTGCAGGTCGTGTGTGTCAGGCCAGTCAG CGGTTGGCAAGGTTGAAGGTCGTGTGTGTCAGGCCAGTCAG < 41bp 1 0.518205171260509 1 0.0609385073184967 experiment 0.963589657478982 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55183945 chr17:55183940 nonsynonymous SNV 0.001 1 16 hm5C_associated_SNPs_27024 0 0 1 0 0 Endoplasmic reticulum 1 0.500231575807864 1 0.999536848384271 hm5C_site_27516 DeepMRMD:1;iRNA_m5C:0.999536848384271 27517 chr17 55183940 55183940 1 + C A LUAD 55183959 + 55183939 55183979 41 GCAGGTCGTGTGTGTCAGGCCAGTCAGCTCCAAGGGCAGAA GAAGGTCGTGTGTGTCAGGCCAGTCAGCTCCAAGGGCAGAA < 41bp 1 0.174853631871468 1 0.05046746134758 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55183959 chr17:55183940 nonsynonymous SNV 0.001 1 2 hm5C_associated_SNPs_27025 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643865124 1 0.999536712269752 hm5C_site_27517 DeepMRMD:1;iRNA_m5C:0.999536712269752 27518 chr19 41811594 41811594 1 + A C LUAD 41811578 + 41811558 41811598 41 GCTTTTTTCCCTCCACTTTCCAGCCGAGTTACAGCCAGCCA GCTTTTTTCCCTCCACTTTCCAGCCGAGTTACAGCCCGCCA < 41bp 1 0.321462326453372 1 0.717169046401978 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41811578 chr19:41811594 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_27026 0 0 1 0 2 Cytosol 1 0.500231643921102 0.565661907196044 0.999536712157796 hm5C_site_27518 DeepMRMD:0.565661907196044;iRNA_m5C:0.999536712157796 27519 chr17 55183939 55183939 1 + G T LUAD 55183945 + 55183925 55183965 41 CGGTTGGCAAGGTTGCAGGTCGTGTGTGTCAGGCCAGTCAG CGGTTGGCAAGGTTTCAGGTCGTGTGTGTCAGGCCAGTCAG < 41bp 1 0.491878579539777 1 0.0606893002986908 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55183945 chr17:55183939 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_27027 0 0 1 0 0 Endoplasmic reticulum 1 0.500231575263073 1 0.999536849473853 hm5C_site_27519 DeepMRMD:1;iRNA_m5C:0.999536849473853 27520 chr17 55183939 55183939 1 + G T LUAD 55183959 + 55183939 55183979 41 GCAGGTCGTGTGTGTCAGGCCAGTCAGCTCCAAGGGCAGAA TCAGGTCGTGTGTGTCAGGCCAGTCAGCTCCAAGGGCAGAA < 41bp 1 0.18528017367758 1 0.0471654534339905 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55183959 chr17:55183939 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_27028 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643865551 1 0.999536712268899 hm5C_site_27520 DeepMRMD:1;iRNA_m5C:0.999536712268899 27521 chr3 184042135 184042135 1 + G A LUAD 184042134 + 184042114 184042154 41 AGAGATGGATGAAGCTGCTACGGTGAGAGAAAACCCACTAT AGAGATGGATGAAGCTGCTACAGTGAGAGAAAACCCACTAT < 41bp 1 0.301461502876904 1 0.333896815776825 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042134 chr3:184042135 synonymous SNV . 0 22 hm5C_associated_SNPs_27029 0 0 1 0 1 Nucleus 1 0.500231643920879 1 0.999536712158243 hm5C_site_27521 DeepMRMD:1;iRNA_m5C:0.999536712158243 27522 chr12 57627019 57627019 1 + G T LUAD 57627007 + 57626987 57627027 41 AGGGGTGAAGGCTGTGGACCCCAAGACTGGCCGGGAGATCC AGGGGTGAAGGCTGTGGACCCCAAGACTGGCCTGGAGATCC < 41bp 1 0.349220406017921 1 0.407606184482574 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627007 chr12:57627019 nonsynonymous SNV 0.993 1 33 hm5C_associated_SNPs_27030 0 0 1 0 1 Cytosol 1 0.500231642876136 1 0.999536714247728 hm5C_site_27522 DeepMRMD:1;iRNA_m5C:0.999536714247728 27523 chr19 19646177 19646177 1 + G A LUAD 19646174 + 19646154 19646194 41 ACCCACCATCTTCTACCCCACACGCTCGCTGGACCTGCTGC ACCCACCATCTTCTACCCCACACACTCGCTGGACCTGCTGC < 41bp 1 0.153952043906819 1 0.0359931886196136 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19646174 chr19:19646177 nonsynonymous SNV 0.042 4 24 hm5C_associated_SNPs_27031 0 0 1 0 2 chromatin 1 0.50023164417061 1 0.99953671165878 hm5C_site_27523 DeepMRMD:1;iRNA_m5C:0.99953671165878 27524 chr11 61725728 61725728 1 + C A LUAD 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTCGTTGTGCCCGTATTCACGTTCCTGCAGTT < 41bp 1 0.185529781932694 1 0.270092189311981 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725728 synonymous SNV . 0 24 hm5C_associated_SNPs_27032 0 0 0 1 1 chromatin 1 0.500231738432681 1 0.999536523134639 hm5C_site_27524 DeepMRMD:1;iRNA_m5C:0.999536523134639 27525 chr14 53173934 53173934 1 + C T LUAD 53173926 + 53173906 53173946 41 CCGGCATCCCCTATGAGAGACGGCTTCTCATCATGGCGGAC CCGGCATCCCCTATGAGAGACGGCTTCTTATCATGGCGGAC < 41bp 1 0.543499568571479 1 0.287674903869629 experiment 0.913000862857042 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53173926 chr14:53173934 synonymous SNV . 0 29 hm5C_associated_SNPs_27033 0 0 1 0 0 Ribosome 1 0.500231643921063 1 0.999536712157873 hm5C_site_27525 DeepMRMD:1;iRNA_m5C:0.999536712157873 27526 chr7 101188641 101188641 1 + C A LUAD 101188639 + 101188619 101188659 41 GGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAG GGCTCCTGGGGCCTCCAGGGCCACGTGGGCTTCCTGGAGAG < 41bp 1 0.267964116464135 1 0.510019958019257 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188639 chr7:101188641 synonymous SNV . 0 23 hm5C_associated_SNPs_27034 0 0 0 0 1 exosome 1 0.500231643921092 0.979960083961486 0.999536712157815 hm5C_site_27526 DeepMRMD:0.979960083961486;iRNA_m5C:0.999536712157815 27527 chr7 101188641 101188641 1 + C A LUAD 101188640 + 101188620 101188660 41 GCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGA GCTCCTGGGGCCTCCAGGGCCACGTGGGCTTCCTGGAGAGA < 41bp 1 0.592004979133978 1 0.35388770699501 experiment 0.815990041732043 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188640 chr7:101188641 synonymous SNV . 0 22 hm5C_associated_SNPs_27035 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_27527 DeepMRMD:1;iRNA_m5C:0.999536712157814 27528 chr14 104642350 104642350 1 + C T LUAD 104642339 + 104642319 104642359 41 CCCTGGCCTCGGGGTCCCGGCCAGTCAGCATCATCAGCAGC CCCTGGCCTCGGGGTCCCGGCCAGTCAGCATTATCAGCAGC < 41bp 1 0.107847984157981 1 0.120786428451538 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642339 chr14:104642350 synonymous SNV . 0 32 hm5C_associated_SNPs_27036 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27528 DeepMRMD:1;iRNA_m5C:0.999536712157815 27529 chr14 104642350 104642350 1 + C T LUAD 104642340 + 104642320 104642360 41 CCTGGCCTCGGGGTCCCGGCCAGTCAGCATCATCAGCAGCA CCTGGCCTCGGGGTCCCGGCCAGTCAGCATTATCAGCAGCA < 41bp 1 0.0802867134693502 1 0.0717496871948242 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642340 chr14:104642350 synonymous SNV . 0 31 hm5C_associated_SNPs_27037 0 0 0 0 0 Ribosome 1 0.500232148558464 1 0.999535702883072 hm5C_site_27529 DeepMRMD:1;iRNA_m5C:0.999535702883072 27530 chr19 33202801 33202801 1 + G T LUAD 33202807 + 33202787 33202827 41 ATATCCACGTGACTGTTCAGCCAAAGTATAAACACGTTTAT ATATCCACGTGACTTTTCAGCCAAAGTATAAACACGTTTAT < 41bp 1 0.313025081039413 1 0.0903228521347046 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUDT19 ENSG00000213965 CDS Human protein_coding chr19:33202807 chr19:33202801 nonsynonymous SNV 0.031 1 15 hm5C_associated_SNPs_27038 0 0 1 0 0 Ribosome 1 0.500231643056066 1 0.999536713887869 hm5C_site_27530 DeepMRMD:1;iRNA_m5C:0.999536713887869 27531 chr2 66691269 66691269 1 + C T LUAD 66691259 + 66691239 66691279 41 AGCCCTCTTGGAACAGAGATCATGATGACACGGCATCTACT AGCCCTCTTGGAACAGAGATCATGATGACATGGCATCTACT < 41bp 1 0.484993789762871 1 0.323663294315338 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691259 chr2:66691269 nonsynonymous SNV 0.998 3 31 hm5C_associated_SNPs_27039 0 0 0 0 2 chromatin 1 0.500231617981607 1 0.999536764036787 hm5C_site_27531 DeepMRMD:1;iRNA_m5C:0.999536764036787 27532 chr7 92027963 92027963 1 + A T LUAD 92027959 + 92027939 92027979 41 TCAGAGTATTGCCCTGATTCCTCCAGCAACTACAGAAATCA TCAGAGTATTGCCCTGATTCCTCCTGCAACTACAGAAATCA < 41bp 1 0.368146427571471 1 0.108802139759064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92027959 chr7:92027963 synonymous SNV . 0 25 hm5C_associated_SNPs_27040 0 0 0 0 0 Cytosol 1 0.500231643921106 1 0.999536712157788 hm5C_site_27532 DeepMRMD:1;iRNA_m5C:0.999536712157788 27533 chr3 20019840 20019840 1 + C T LUAD 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAGTCCTATGCAGATGACAATAGTTTATTATTTATGGA < 41bp 1 0.417062767012704 1 0.0817316472530365 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019840 synonymous SNV . 0 36 hm5C_associated_SNPs_27041 0 0 1 1 2 Ribosome 1 0.500231657007033 1 0.999536685985934 hm5C_site_27533 DeepMRMD:1;iRNA_m5C:0.999536685985934 27534 chr19 18975033 18975033 1 + G T LUAD 18975023 + 18975003 18975043 41 ATGTATGATGCCCGGGAGGCCATCATCCCAGGCTCCGTCTA ATGTATGATGCCCGGGAGGCCATCATCCCATGCTCCGTCTA < 41bp 1 0.470061761865101 1 0.0767872333526611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18975023 chr19:18975033 nonsynonymous SNV 0.904 5 31 hm5C_associated_SNPs_27042 0 0 1 0 1 Nucleus 1 0.500173921041329 1 0.999652157917342 hm5C_site_27534 DeepMRMD:1;iRNA_m5C:0.999652157917342 27535 chr5 908506 908506 1 + G T LUAD 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCCCGAAATGCCTGCAGGTCGGGCACCGAGCCATCAGATG < 41bp 1 0.634980630017097 1 0.252672582864761 experiment 0.730038739965806 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908506 nonsynonymous SNV 0.386 2 20 hm5C_associated_SNPs_27043 0 0 0 0 2 Ribosome 1 0.500231643921158 1 0.999536712157684 hm5C_site_27535 DeepMRMD:1;iRNA_m5C:0.999536712157684 27536 chr17 74383634 74383634 1 + C G LUAD 74383622 + 74383602 74383642 41 GGTTGCGTGGAGCCCCCGCCCAGCTGGAAGCCCCAGCAGAT GGTTGCGTGGAGCCCCCGCCCAGCTGGAAGCCGCAGCAGAT < 41bp 1 0.574574136924236 1 0.657870173454285 experiment 0.850851726151528 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74383622 chr17:74383634 synonymous SNV . 0 33 hm5C_associated_SNPs_27044 0 0 1 0 0 nucleolus 1 0.500231644280757 0.68425965309143 0.999536711438486 hm5C_site_27536 DeepMRMD:0.68425965309143;iRNA_m5C:0.999536711438486 27537 chr1 164789369 164789369 1 + T G LUAD 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACGCAA < 41bp 1 0.617810959774843 1 0.24872237443924 experiment 0.764378080450314 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789369 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_27045 0 0 0 0 2 Ribosome 1 0.500232648803754 1 0.999534702392492 hm5C_site_27537 DeepMRMD:1;iRNA_m5C:0.999534702392492 27538 chr5 33459940 33459940 1 + G A LUAD 33459929 + 33459909 33459949 41 CCTTTGAGGTGGAGAAGGAGCTGTTTGCCCTGAAACCCATG CCTTTGAGGTGGAGAAGGAGCTGTTTGCCCTAAAACCCATG < 41bp 1 0.484530907690159 1 0.108267515897751 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33459929 chr5:33459940 synonymous SNV . 0 32 hm5C_associated_SNPs_27046 0 0 1 0 1 Nucleus 1 0.50023164392114 1 0.99953671215772 hm5C_site_27538 DeepMRMD:1;iRNA_m5C:0.99953671215772 27539 chr19 17424908 17424908 1 + C G LUAD 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGGCT < 41bp 1 0.172772720291872 1 0.178418874740601 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424908 nonsynonymous SNV 0.998 1 39 hm5C_associated_SNPs_27047 0 0 1 0 2 Ribosome 1 0.500231637754024 1 0.999536724491952 hm5C_site_27539 DeepMRMD:1;iRNA_m5C:0.999536724491952 27540 chr1 168014234 168014234 1 + C G LUAD 168014224 + 168014204 168014244 41 TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT TTGATCGCTCTTGTGGGGTTCCAGAAGAATGTGCTTCATCT < 41bp 1 0.383648162194967 1 0.469597429037094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168014224 chr1:168014234 nonsynonymous SNV 0.085 1 31 hm5C_associated_SNPs_27048 0 0 1 0 1 Cytosol 1 0.500231643903411 1 0.999536712193178 hm5C_site_27540 DeepMRMD:1;iRNA_m5C:0.999536712193178 27541 chr6 107956353 107956353 1 + G C LUAD 107956346 + 107956326 107956366 41 CCTGAGGAACCGGCGGTGAGCGAGCTAGAGTCGGTCAAGGA CCTGAGGAACCGGCGGTGAGCGAGCTACAGTCGGTCAAGGA < 41bp 1 0.513806145848064 1 0.447559267282486 experiment 0.972387708303873 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SOBP ENSG00000112320 CDS Human protein_coding chr6:107956346 chr6:107956353 nonsynonymous SNV 0.980 3 28 hm5C_associated_SNPs_27050 0 0 1 0 0 cytosol 1 0.500231612699013 1 0.999536774601975 hm5C_site_27541 DeepMRMD:1;iRNA_m5C:0.999536774601975 27542 chr1 144014034 144014034 1 + G T LUAD 144014050 + 144014030 144014070 41 ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC ACCTTGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC < 41bp 1 0.151996489479547 1 0.163876324892044 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014050 chr1:144014034 . . 0 5 hm5C_associated_SNPs_27051 0 0 1 0 1 unknown 1 0.500231783506605 1 0.99953643298679 hm5C_site_27542 DeepMRMD:1;iRNA_m5C:0.99953643298679 27543 chr1 144014034 144014034 1 + G T LUAD 144014052 + 144014032 144014072 41 CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG CTTGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG < 41bp 1 0.275289314461071 1 0.420626223087311 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014052 chr1:144014034 . . 0 3 hm5C_associated_SNPs_27052 0 0 1 0 1 unknown 1 0.500231669320478 1 0.999536661359043 hm5C_site_27543 DeepMRMD:1;iRNA_m5C:0.999536661359043 27544 chr14 23239013 23239013 1 + C G LUAD 23239030 + 23239010 23239050 41 TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC TGCGCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC < 41bp 1 0.312826232619766 1 0.0326271653175354 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239030 chr14:23239013 synonymous SNV . 0 4 hm5C_associated_SNPs_27053 0 0 1 0 1 Cytosol 1 0.500231644593078 1 0.999536710813844 hm5C_site_27544 DeepMRMD:1;iRNA_m5C:0.999536710813844 27545 chrX 49853406 49853406 1 + C T LUAD 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTT < 41bp 1 0.141869147652523 1 0.0909989178180695 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853406 stopgain 1.000 1 41 hm5C_associated_SNPs_27054 1 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27545 DeepMRMD:1;iRNA_m5C:0.999536712157815 Dent disease 1 Dent disease 1 27546 chrX 103431193 103431193 1 + G T LUAD 103431198 + 103431178 103431218 41 CTGAGATGGGTCTTCGGGAGCAACTTGATATTATTAAGATC CTGAGATGGGTCTTCTGGAGCAACTTGATATTATTAAGATC < 41bp 1 0.296363930183024 1 0.195012718439102 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103431198 chrX:103431193 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_27056 0 0 1 0 1 Ribosome 1 0.500231643921857 1 0.999536712156285 hm5C_site_27546 DeepMRMD:1;iRNA_m5C:0.999536712156285 27547 chr1 203816441 203816441 1 + C T LUAD 203816460 + 203816440 203816480 41 TCTACTTCAGGAGCAAGAAGCTCCTCCACTATCCGTATCAA TTTACTTCAGGAGCAAGAAGCTCCTCCACTATCCGTATCAA < 41bp 1 0.30837558245722 1 0.236208736896515 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203816460 chr1:203816441 nonsynonymous SNV 0.953 0 2 hm5C_associated_SNPs_27057 0 0 1 0 0 Nucleus 1 0.500231643921161 1 0.999536712157677 hm5C_site_27547 DeepMRMD:1;iRNA_m5C:0.999536712157677 27548 chr19 58369964 58369964 1 + G C LUAD 58369959 + 58369939 58369979 41 TTCAGGTTGTTGGTGTGGATCAAAAGATGAGGAGGCACCTT TTCAGGTTGTTGGTGTGGATCAAAACATGAGGAGGCACCTT < 41bp 1 0.572757859610462 1 0.339991629123688 experiment 0.854484280779076 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF587 ENSG00000198466;ENSG00000268750 CDS Human other chr19:58369959 chr19:58369964 nonsynonymous SNV 0.006 0 26 hm5C_associated_SNPs_27058 0 0 0 0 1 Nucleus 1 0.500231644024256 1 0.999536711951489 hm5C_site_27548 DeepMRMD:1;iRNA_m5C:0.999536711951489 27549 chr17 65822303 65822303 1 + A G LUAD 65822293 + 65822273 65822313 41 GAGGAGGAGGAGGACGGCGACGCCGAGGAGACCCAGGATTC GAGGAGGAGGAGGACGGCGACGCCGAGGAGGCCCAGGATTC < 41bp 1 0.667184817235918 1 0.493131726980209 experiment 0.665630365528164 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65822293 chr17:65822303 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_27060 0 0 1 0 0 Cytosol 1 0.50023164395181 1 0.999536712096381 hm5C_site_27549 DeepMRMD:1;iRNA_m5C:0.999536712096381 27550 chr17 65822303 65822303 1 + A G LUAD 65822295 + 65822275 65822315 41 GGAGGAGGAGGACGGCGACGCCGAGGAGACCCAGGATTCTG GGAGGAGGAGGACGGCGACGCCGAGGAGGCCCAGGATTCTG < 41bp 1 0.497227946678036 1 0.512765884399414 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65822295 chr17:65822303 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_27061 0 0 1 0 0 Cytosol 1 0.500231642618673 0.974468231201172 0.999536714762654 hm5C_site_27550 DeepMRMD:0.974468231201172;iRNA_m5C:0.999536714762654 27551 chr17 65822303 65822303 1 + A G LUAD 65822304 + 65822284 65822324 41 GGACGGCGACGCCGAGGAGACCCAGGATTCTGAGGACGACG GGACGGCGACGCCGAGGAGGCCCAGGATTCTGAGGACGACG < 41bp 1 0.276711045446202 1 0.0745795667171478 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BPTF ENSG00000171634 CDS Human protein_coding chr17:65822304 chr17:65822303 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_27063 0 0 1 0 0 Cytosol 1 0.500231643932435 1 0.999536712135129 hm5C_site_27551 DeepMRMD:1;iRNA_m5C:0.999536712135129 27552 chr17 65822303 65822303 1 + A G LUAD 65822305 + 65822285 65822325 41 GACGGCGACGCCGAGGAGACCCAGGATTCTGAGGACGACGA GACGGCGACGCCGAGGAGGCCCAGGATTCTGAGGACGACGA < 41bp 1 0.358786109099626 1 0.250952690839767 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BPTF ENSG00000171634 CDS Human protein_coding chr17:65822305 chr17:65822303 nonsynonymous SNV 1.000 0 19 hm5C_associated_SNPs_27064 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27552 DeepMRMD:1;iRNA_m5C:0.999536712157815 27553 chr17 65822303 65822303 1 + A G LUAD 65822320 + 65822300 65822340 41 GAGACCCAGGATTCTGAGGACGACGAGGAGGATGAGATGGA GAGGCCCAGGATTCTGAGGACGACGAGGAGGATGAGATGGA < 41bp 1 0.317899818648843 1 0.416222155094147 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BPTF ENSG00000171634 CDS Human protein_coding chr17:65822320 chr17:65822303 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_27066 0 0 1 0 0 Cytosol 1 0.500231641149279 1 0.999536717701442 hm5C_site_27553 DeepMRMD:1;iRNA_m5C:0.999536717701442 27554 chr17 65822303 65822303 1 + A G LUAD 65822323 + 65822303 65822343 41 ACCCAGGATTCTGAGGACGACGAGGAGGATGAGATGGAAGA GCCCAGGATTCTGAGGACGACGAGGAGGATGAGATGGAAGA < 41bp 1 0.567964528321723 1 0.72292172908783 experiment 0.864070943356554 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65822323 chr17:65822303 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_27067 0 0 1 0 0 Cytosol 1 0.500231643921092 0.55415654182434 0.999536712157815 hm5C_site_27554 DeepMRMD:0.55415654182434;iRNA_m5C:0.999536712157815 27555 chr16 68109352 68109352 1 + G A LUAD 68109341 + 68109321 68109361 41 CAGGCTCTCAGCCAAGACTTCAGAGCAGACAGGGGAGCCAG CAGGCTCTCAGCCAAGACTTCAGAGCAGACAAGGGAGCCAG < 41bp 1 0.634700033745708 1 0.668208718299866 experiment 0.730599932508584 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68109341 chr16:68109352 nonsynonymous SNV 0.030 0 32 hm5C_associated_SNPs_27068 0 0 0 0 2 Ribosome 1 0.500231643945473 0.663582563400268 0.999536712109054 hm5C_site_27555 DeepMRMD:0.663582563400268;iRNA_m5C:0.999536712109054 27556 chr2 167056301 167056301 1 + C G LUAD 167056285 - 167056265 167056305 41 CCAGGATTGGCCGAATCCTACGTCTAGTCAAAGGAGCAAAG CCAGCATTGGCCGAATCCTACGTCTAGTCAAAGGAGCAAAG < 41bp 1 0.145730360174152 1 0.036712646484375 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167056285 chr2:167056301 nonsynonymous SNV 0.996 5 5 hm5C_associated_SNPs_27070 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643915683 1 0.999536712168634 hm5C_site_27556 DeepMRMD:1;iRNA_m5C:0.999536712168634 27557 chr11 34978962 34978962 1 + G T LUAD 34978967 + 34978947 34978987 41 AAAATATACGGCTAGGTTCACTAATTGGTTTGATAGTAGAA AAAATATACGGCTAGTTTCACTAATTGGTTTGATAGTAGAA < 41bp 1 0.0888236911440771 1 0.145784378051758 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34978967 chr11:34978962 nonsynonymous SNV 0.980 4 16 hm5C_associated_SNPs_27071 0 0 1 0 1 Ribosome 1 0.500231607131979 1 0.999536785736041 hm5C_site_27557 DeepMRMD:1;iRNA_m5C:0.999536785736041 27558 chr7 2686562 2686562 1 + T A LUAD 2686570 + 2686550 2686590 41 TTCTACTCCTTCTGGCTGTGCTGCCGGCGGCGCAAGAGCGA TTCTACTCCTTCAGGCTGTGCTGCCGGCGGCGCAAGAGCGA < 41bp 1 0.33599758110703 1 0.255390524864197 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686570 chr7:2686562 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_27073 0 0 1 0 2 Ribosome 1 0.500231644113215 1 0.99953671177357 hm5C_site_27558 DeepMRMD:1;iRNA_m5C:0.99953671177357 27559 chr1 16778419 16778419 1 + A T LUAD 16778415 + 16778395 16778435 41 GCTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCA GCTGAGCCTGCTTCCCCCTCCCCCTGGGGGGAAAACCTCCA < 41bp 1 0.390311490599749 1 0.154043793678284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778415 chr1:16778419 synonymous SNV . 0 25 hm5C_associated_SNPs_27074 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27559 DeepMRMD:1;iRNA_m5C:0.999536712157815 27560 chr1 16778419 16778419 1 + A T LUAD 16778416 + 16778396 16778436 41 CTGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCAC CTGAGCCTGCTTCCCCCTCCCCCTGGGGGGAAAACCTCCAC < 41bp 1 0.558686122455174 1 0.350363343954086 experiment 0.882627755089653 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778416 chr1:16778419 synonymous SNV . 0 24 hm5C_associated_SNPs_27075 0 0 1 0 2 Ribosome 1 0.500231643921111 1 0.999536712157777 hm5C_site_27560 DeepMRMD:1;iRNA_m5C:0.999536712157777 27561 chr1 16778419 16778419 1 + A T LUAD 16778417 + 16778397 16778437 41 TGAGCCTGCTTCCCCCTCCCCCAGGGGGGAAAACCTCCACC TGAGCCTGCTTCCCCCTCCCCCTGGGGGGAAAACCTCCACC < 41bp 1 0.522302020805099 1 0.392767071723938 experiment 0.955395958389803 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778417 chr1:16778419 synonymous SNV . 0 23 hm5C_associated_SNPs_27076 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27561 DeepMRMD:1;iRNA_m5C:0.999536712157815 27562 chr19 7620649 7620649 1 + G C LUAD 7620645 + 7620625 7620665 41 GCAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA GCAGCGGGCCCGGGAGTGGGCCAACGTGTGTGTTGCGAGGA < 41bp 1 0.104666686958492 1 0.266198933124542 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620645 chr19:7620649 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_27077 0 0 0 0 1 Ribosome 1 0.500232040971837 1 0.999535918056326 hm5C_site_27562 DeepMRMD:1;iRNA_m5C:0.999535918056326 27563 chr19 7620649 7620649 1 + G C LUAD 7620646 + 7620626 7620666 41 CAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG CAGCGGGCCCGGGAGTGGGCCAACGTGTGTGTTGCGAGGAG < 41bp 1 0.312673500618951 1 0.500672161579132 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620646 chr19:7620649 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_27078 0 0 0 0 1 Ribosome 1 0.500231643921092 0.998655676841736 0.999536712157815 hm5C_site_27563 DeepMRMD:0.998655676841736;iRNA_m5C:0.999536712157815 27564 chr7 128478828 128478828 1 + G T LUAD 128478838 + 128478818 128478858 41 CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG CCCATCACCCTCAGTCCCTTCCCTGTCCATGTGTCGGAAGG < 41bp 1 0.0600443260850577 1 0.0262850821018219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128478838 chr7:128478828 nonsynonymous SNV 0.995 2 11 hm5C_associated_SNPs_27080 0 0 0 0 1 chromatin 1 0.500231643562914 1 0.999536712874173 hm5C_site_27564 DeepMRMD:1;iRNA_m5C:0.999536712874173 27565 chr1 214832271 214832271 1 + G T LUAD 214832258 + 214832238 214832278 41 GAAGAACAACCATGGCAACTCGGACCAGCCCCCGCCTGGCT GAAGAACAACCATGGCAACTCGGACCAGCCCCCTCCTGGCT < 41bp 1 0.335543981880746 1 0.200799584388733 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214832258 chr1:214832271 nonsynonymous SNV 0.874 3 34 hm5C_associated_SNPs_27081 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27565 DeepMRMD:1;iRNA_m5C:0.999536712157815 27566 chr11 118344408 118344408 1 + C T LUAD 118344404 + 118344384 118344424 41 CTTGGTTTACCCCAGGCTCTCAGACTGAAAGAGGGAGAAAT CTTGGTTTACCCCAGGCTCTCAGATTGAAAGAGGGAGAAAT < 41bp 1 0.18331737855985 1 0.840421378612518 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118344404 chr11:118344408 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_27082 0 0 1 0 0 Cytosol 1 0.500231643915421 0.319157242774964 0.999536712169158 hm5C_site_27566 DeepMRMD:0.319157242774964;iRNA_m5C:0.999536712169158 27567 chr2 54858612 54858612 1 + G T LUAD 54858614 + 54858594 54858634 41 ACATGTTTCTGCGGCAGCGGCTGCAGGCCCTGGACACTGGA ACATGTTTCTGCGGCAGCTGCTGCAGGCCCTGGACACTGGA < 41bp 1 0.675390426339492 1 0.576643347740173 experiment 0.649219147321016 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858614 chr2:54858612 nonsynonymous SNV 0.994 4 19 hm5C_associated_SNPs_27083 0 0 1 0 0 Nucleus 1 0.500231643734883 0.846713304519654 0.999536712530234 hm5C_site_27567 DeepMRMD:0.846713304519654;iRNA_m5C:0.999536712530234 27568 chr2 54858612 54858612 1 + G T LUAD 54858617 + 54858597 54858637 41 TGTTTCTGCGGCAGCGGCTGCAGGCCCTGGACACTGGATGG TGTTTCTGCGGCAGCTGCTGCAGGCCCTGGACACTGGATGG < 41bp 1 0.310781207396343 1 0.58372974395752 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858617 chr2:54858612 nonsynonymous SNV 0.994 4 16 hm5C_associated_SNPs_27084 0 0 1 0 0 Nucleus 1 0.500231643924082 0.83254051208496 0.999536712151836 hm5C_site_27568 DeepMRMD:0.83254051208496;iRNA_m5C:0.999536712151836 27569 chr2 54858612 54858612 1 + G T LUAD 54858621 + 54858601 54858641 41 TCTGCGGCAGCGGCTGCAGGCCCTGGACACTGGATGGAACG TCTGCGGCAGCTGCTGCAGGCCCTGGACACTGGATGGAACG < 41bp 1 0.136586491173886 1 0.0876924991607666 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858621 chr2:54858612 nonsynonymous SNV 0.994 4 12 hm5C_associated_SNPs_27085 0 0 1 0 0 Nucleus 1 0.500231643921785 1 0.99953671215643 hm5C_site_27569 DeepMRMD:1;iRNA_m5C:0.99953671215643 27570 chr2 54858612 54858612 1 + G T LUAD 54858628 + 54858608 54858648 41 CAGCGGCTGCAGGCCCTGGACACTGGATGGAACGAGCTCCA CAGCTGCTGCAGGCCCTGGACACTGGATGGAACGAGCTCCA < 41bp 1 0.356427176175424 1 0.350538909435272 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858628 chr2:54858612 nonsynonymous SNV 0.994 4 5 hm5C_associated_SNPs_27086 0 0 1 0 0 Nucleus 1 0.500244903910182 1 0.999510192179635 hm5C_site_27570 DeepMRMD:1;iRNA_m5C:0.999510192179635 27571 chr16 30081487 30081487 1 + G T LUAD 30081505 + 30081485 30081525 41 TGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACG TGTGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACG < 41bp 1 0.0721557309640221 1 0.0471870005130768 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081505 chr16:30081487 nonsynonymous SNV 0.725 3 3 hm5C_associated_SNPs_27087 0 0 1 0 1 Cytosol 1 0.500229265041308 1 0.999541469917383 hm5C_site_27571 DeepMRMD:1;iRNA_m5C:0.999541469917383 27572 chr16 30081487 30081487 1 + G T LUAD 30081506 + 30081486 30081526 41 GGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGC GTGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGC < 41bp 1 0.0621827687525191 1 0.0591294467449188 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081506 chr16:30081487 nonsynonymous SNV 0.725 3 2 hm5C_associated_SNPs_27088 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_27572 DeepMRMD:1;iRNA_m5C:0.999536712157814 27573 chr16 30081487 30081487 1 + G T LUAD 30081507 + 30081487 30081527 41 GGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCC TGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCC < 41bp 1 0.176746160341164 1 0.064243346452713 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081507 chr16:30081487 nonsynonymous SNV 0.725 3 1 hm5C_associated_SNPs_27089 0 0 1 0 1 Cytosol 1 0.50023165081042 1 0.999536698379159 hm5C_site_27573 DeepMRMD:1;iRNA_m5C:0.999536698379159 27574 chr14 102891465 102891465 1 + G A LUAD 102891463 + 102891443 102891483 41 ATCTTAAAAGATGCTTTTGCCGGGGGAGTCAAGCCTTTTGA ATCTTAAAAGATGCTTTTGCCGAGGGAGTCAAGCCTTTTGA < 41bp 1 0.674187641985027 1 0.856736898422241 experiment 0.651624716029947 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102891463 chr14:102891465 nonsynonymous SNV 0.880 0 23 hm5C_associated_SNPs_27090 0 0 0 0 0 Cytosol 1 0.500231643921622 0.286526203155518 0.999536712156755 hm5C_site_27574 DeepMRMD:0.286526203155518;iRNA_m5C:0.999536712156755 27575 chr7 142460282 142460282 1 + C A LUAD 142460283 + 142460263 142460303 41 CTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCA CTCTTCCTGATCCTCACAGACGACTACCCAGACGAGCTGCA < 41bp 1 0.185073016953242 1 0.134902745485306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460283 chr7:142460282 nonsynonymous SNV 0.002 1 20 hm5C_associated_SNPs_27091 0 0 0 0 1 Cytosol 1 0.500231635091175 1 0.999536729817651 hm5C_site_27575 DeepMRMD:1;iRNA_m5C:0.999536729817651 27576 chr7 142460282 142460282 1 + C A LUAD 142460286 + 142460266 142460306 41 TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTG TTCCTGATCCTCACAGACGACTACCCAGACGAGCTGCAGTG < 41bp 1 0.135239604114563 1 0.127875149250031 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460286 chr7:142460282 nonsynonymous SNV 0.002 1 17 hm5C_associated_SNPs_27092 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_27576 DeepMRMD:1;iRNA_m5C:0.999536712157814 27577 chr7 142460282 142460282 1 + C A LUAD 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGACGACTACCCAGACGAGCTGCAGTGCCT < 41bp 1 0.117401801119131 1 0.168737858533859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460282 nonsynonymous SNV 0.002 1 14 hm5C_associated_SNPs_27093 0 0 0 0 1 Cytosol 1 0.500231554304283 1 0.999536891391434 hm5C_site_27577 DeepMRMD:1;iRNA_m5C:0.999536891391434 27578 chr7 142460282 142460282 1 + C A LUAD 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGACGACTACCCAGACGAGCTGCAGTGCCTG < 41bp 1 0.379668709111195 1 0.235118985176086 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460282 nonsynonymous SNV 0.002 1 13 hm5C_associated_SNPs_27094 0 0 0 0 1 Cytosol 1 0.500232642293277 1 0.999534715413447 hm5C_site_27578 DeepMRMD:1;iRNA_m5C:0.999534715413447 27579 chr7 142460282 142460282 1 + C A LUAD 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGACGACTACCCAGACGAGCTGCAGTGCCTGG < 41bp 1 0.409838568104512 1 0.38178288936615 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460282 nonsynonymous SNV 0.002 1 12 hm5C_associated_SNPs_27095 0 0 0 0 1 Cytosol 1 0.500231620956473 1 0.999536758087054 hm5C_site_27579 DeepMRMD:1;iRNA_m5C:0.999536758087054 27580 chr7 142460282 142460282 1 + C A LUAD 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGACGACTACCCAGACGAGCTGCAGTGCCTGGATGC < 41bp 1 0.419517240678029 1 0.414739310741425 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460282 nonsynonymous SNV 0.002 1 8 hm5C_associated_SNPs_27096 0 0 0 0 1 Cytosol 1 0.500227491087775 1 0.99954501782445 hm5C_site_27580 DeepMRMD:1;iRNA_m5C:0.99954501782445 27581 chr7 142460282 142460282 1 + C A LUAD 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGACGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT < 41bp 1 0.652011659337701 1 0.165842831134796 experiment 0.695976681324597 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460282 nonsynonymous SNV 0.002 1 4 hm5C_associated_SNPs_27097 0 0 0 0 1 Cytosol 1 0.500231618011204 1 0.999536763977592 hm5C_site_27581 DeepMRMD:1;iRNA_m5C:0.999536763977592 27582 chr7 142460282 142460282 1 + C A LUAD 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG ACGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG < 41bp 1 0.309668812947108 1 0.21488144993782 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460282 nonsynonymous SNV 0.002 1 1 hm5C_associated_SNPs_27098 0 0 0 0 1 Cytosol 1 0.500231644288932 1 0.999536711422136 hm5C_site_27582 DeepMRMD:1;iRNA_m5C:0.999536711422136 27583 chr4 30725906 30725906 1 + G C LUAD 30725920 + 30725900 30725940 41 CACTGTGGAGGCTTCTAAGCCAAATGGACAGAGGTATGATA CACTGTCGAGGCTTCTAAGCCAAATGGACAGAGGTATGATA < 41bp 1 0.119307876951039 1 0.680407762527466 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCDH7 ENSG00000169851 CDS Human protein_coding chr4:30725920 chr4:30725906 synonymous SNV . 0 7 hm5C_associated_SNPs_27099 0 0 1 0 0 Ribosome 1 0.500231643936828 0.639184474945068 0.999536712126344 hm5C_site_27583 DeepMRMD:0.639184474945068;iRNA_m5C:0.999536712126344 27584 chr1 39910445 39910445 1 + C T LUAD 39910457 + 39910437 39910477 41 AGACAGAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAT AGACAGAATAGAGTGTAGCACTTTTGGAGCAGAAGTGGCAT < 41bp 1 0.0640951019799832 1 0.0401722490787506 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39910457 chr1:39910445 stopgain 0.999 1 9 hm5C_associated_SNPs_27100 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921539 1 0.999536712156921 hm5C_site_27584 DeepMRMD:1;iRNA_m5C:0.999536712156921 27585 chr10 43289422 43289422 1 + G A LUAD 43289408 + 43289388 43289428 41 CGCTGTTTTCTGATTCCAAGCCACTTGGGTCAGAGGATATA CGCTGTTTTCTGATTCCAAGCCACTTGGGTCAGAAGATATA < 41bp 1 0.103683744325604 1 0.0540798008441925 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43289408 chr10:43289422 synonymous SNV . 0 35 hm5C_associated_SNPs_27101 0 0 1 0 0 chromatin 1 0.500231643976754 1 0.999536712046492 hm5C_site_27585 DeepMRMD:1;iRNA_m5C:0.999536712046492 27586 chr11 61404464 61404464 1 + A T LUAD 61404452 + 61404432 61404472 41 ACCTCACTGAGATCAGGGACCTGCTGCTGGCCAATAAGGTG ACCTCACTGAGATCAGGGACCTGCTGCTGGCCTATAAGGTG < 41bp 1 0.422771428033295 1 0.372747391462326 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404452 chr11:61404464 . . 0 33 hm5C_associated_SNPs_27102 0 0 0 0 0 unknown 1 0.50023164392116 1 0.999536712157679 hm5C_site_27586 DeepMRMD:1;iRNA_m5C:0.999536712157679 27587 chrX 107821201 107821201 1 + G T LUAD 107821198 + 107821178 107821218 41 TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGG TTAGGGCCCTCCTGGTCCACCAGTACTTCCAGGACCTAAGG < 41bp 1 0.174956892549686 1 0.361010700464249 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821198 chrX:107821201 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_27103 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27587 DeepMRMD:1;iRNA_m5C:0.999536712157815 27588 chrX 107821201 107821201 1 + G T LUAD 107821203 + 107821183 107821223 41 GCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT GCCCTCCTGGTCCACCAGTACTTCCAGGACCTAAGGTAATT < 41bp 1 0.0388595622914353 1 0.0269274413585663 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821203 chrX:107821201 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_27104 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27588 DeepMRMD:1;iRNA_m5C:0.999536712157815 27589 chr8 22475291 22475291 1 + G C LUAD 22475273 + 22475253 22475293 41 AACCAGTCAGAGATGGAGTTCTCTTCACTTCAGGACATGGT AACCAGTCAGAGATGGAGTTCTCTTCACTTCAGGACATCGT < 41bp 1 0.0709543511019348 1 0.0950185656547546 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475273 chr8:22475291 nonsynonymous SNV 0.998 2 39 hm5C_associated_SNPs_27105 0 0 1 0 2 Nucleus 1 0.500231262684538 1 0.999537474630924 hm5C_site_27589 DeepMRMD:1;iRNA_m5C:0.999537474630924 27590 chrX 48399815 48399815 1 + C A LUAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTCATCCGAGACTTTGATTTGAGTGG < 41bp 1 0.450597172121309 1 0.571389675140381 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399815 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_27109 0 0 0 0 3 nucleolus 1 0.500231593927186 0.857220649719238 0.999536812145628 hm5C_site_27590 DeepMRMD:0.857220649719238;iRNA_m5C:0.999536812145628 27591 chr16 3458664 3458664 1 + G C LUAD 3458648 + 3458628 3458668 41 GCAACATCTTGGTCACCAGCCCACCCGCTCAGCAAAGAAAC GCAACATCTTGGTCACCAGCCCACCCGCTCAGCAAACAAAC < 41bp 1 0.0723579590288462 1 0.107611835002899 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF174 ENSG00000103343 CDS Human protein_coding chr16:3458648 chr16:3458664 nonsynonymous SNV 0.989 0 37 hm5C_associated_SNPs_27110 0 0 0 0 0 Ribosome 1 0.500231645000267 1 0.999536709999465 hm5C_site_27591 DeepMRMD:1;iRNA_m5C:0.999536709999465 27592 chr3 25542757 25542757 1 + A G LUAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGGATCGATGCCAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.241625432889814 1 0.0905558466911316 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542757 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_27111 0 0 1 0 2 nucleoplasm 1 0.50023164392112 1 0.99953671215776 hm5C_site_27592 DeepMRMD:1;iRNA_m5C:0.99953671215776 27593 chr1 228468275 228468275 1 + G T LUAD 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCATAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT < 41bp 1 0.0477329298402258 1 0.0572911202907562 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468275 stopgain 0.003 1 7 hm5C_associated_SNPs_27112 0 0 0 0 1 Ribosome 1 0.500231653574829 1 0.999536692850342 hm5C_site_27593 DeepMRMD:1;iRNA_m5C:0.999536692850342 27594 chr7 94057032 94057032 1 + C A LUAD 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC CGATGGAGACTTCTACAGGGCTGACAAGCCTCGCTCAGCAC < 41bp 1 0.134640727939889 1 0.0254159271717072 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057032 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_27113 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643903494 1 0.999536712193013 hm5C_site_27594 DeepMRMD:1;iRNA_m5C:0.999536712193013 27595 chr3 48506022 48506022 1 + G T LUAD 48506023 + 48506003 48506043 41 TTGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAAC TTGGTGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAAC < 41bp 1 0.139707570452209 1 0.0980057418346405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506023 chr3:48506022 nonsynonymous SNV 0.149 0 20 hm5C_associated_SNPs_27114 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27595 DeepMRMD:1;iRNA_m5C:0.999536712157815 27596 chr3 48506022 48506022 1 + G T LUAD 48506024 + 48506004 48506044 41 TGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACT TGGTGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAACT < 41bp 1 0.4603127032506 1 0.549074828624725 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506024 chr3:48506022 nonsynonymous SNV 0.149 0 19 hm5C_associated_SNPs_27115 0 0 1 0 2 chromatin 1 0.500232718490808 0.90185034275055 0.999534563018383 hm5C_site_27596 DeepMRMD:0.90185034275055;iRNA_m5C:0.999534563018383 27597 chr3 48506022 48506022 1 + G T LUAD 48506025 + 48506005 48506045 41 GGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTG GGTGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAACTG < 41bp 1 0.383169281409768 1 0.0660290420055389 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506025 chr3:48506022 nonsynonymous SNV 0.149 0 18 hm5C_associated_SNPs_27116 0 0 1 0 2 chromatin 1 0.500231643921041 1 0.999536712157919 hm5C_site_27597 DeepMRMD:1;iRNA_m5C:0.999536712157919 27598 chr3 48506022 48506022 1 + G T LUAD 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAACTGC < 41bp 1 0.373741383793443 1 0.0919609069824219 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506022 nonsynonymous SNV 0.149 0 17 hm5C_associated_SNPs_27117 0 0 1 0 2 chromatin 1 0.500231966497306 1 0.999536067005388 hm5C_site_27598 DeepMRMD:1;iRNA_m5C:0.999536067005388 27599 chr3 48506022 48506022 1 + G T LUAD 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCCCTTTCCCCCAGTCACTGGCTCCAACTGCC < 41bp 1 0.252567781736458 1 0.114312827587128 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506022 nonsynonymous SNV 0.149 0 16 hm5C_associated_SNPs_27118 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27599 DeepMRMD:1;iRNA_m5C:0.999536712157815 27600 chrX 73046905 73046905 1 + C A LUAD 73046893 - 73046873 73046913 41 GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC GATGGTTTTAGACTTGAGACCCGAGGACTAAGATGGAAAGC < 41bp 1 0.161872453546256 1 0.290425658226013 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046893 chrX:73046905 . . 0 9 hm5C_associated_SNPs_27119 0 0 1 3 0 unknown 1 0.500231643915636 1 0.999536712168729 hm5C_site_27600 DeepMRMD:1;iRNA_m5C:0.999536712168729 27601 chrX 73046905 73046905 1 + C A LUAD 73046894 - 73046874 73046914 41 AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG AGATGGTTTTAGACTTGAGACCCGAGGACTAAGATGGAAAG < 41bp 1 0.409409242359587 1 0.152937978506088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046894 chrX:73046905 . . 0 10 hm5C_associated_SNPs_27120 0 0 1 3 0 unknown 1 0.500231643921094 1 0.999536712157813 hm5C_site_27601 DeepMRMD:1;iRNA_m5C:0.999536712157813 27602 chrX 73046905 73046905 1 + C A LUAD 73046915 - 73046895 73046935 41 AGAAGGCCCAAAGTATAAGACAGATGGTTTGAGACTTGAGA AGAAGGCCCAAAGTATAAGACAGATGGTTTTAGACTTGAGA < 41bp 1 0.146666130361763 1 0.252923727035522 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046915 chrX:73046905 . . 0 31 hm5C_associated_SNPs_27121 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_27602 DeepMRMD:1;iRNA_m5C:0.999536712157815 27603 chr9 35792589 35792589 1 + G T LUAD 35792598 + 35792578 35792618 41 GGGCACTGCCCGTGGACCTGCGGTTTGTCAGCTCCGAACTG GGGCACTGCCCTTGGACCTGCGGTTTGTCAGCTCCGAACTG < 41bp 1 0.478694492875255 1 0.290164977312088 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NPR2 ENSG00000159899 CDS Human protein_coding chr9:35792598 chr9:35792589 nonsynonymous SNV 1.000 0 12 hm5C_associated_SNPs_27122 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_27603 DeepMRMD:1;iRNA_m5C:0.999536712157815 27604 chr6 110059615 110059615 1 + A G LUAD 110059608 + 110059588 110059628 41 ATATAATTAAAAGTACTGTGCATCGTGACTGGCTTTTGTAT ATATAATTAAAAGTACTGTGCATCGTGGCTGGCTTTTGTAT < 41bp 1 0.104132474413674 1 0.0604777336120605 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110059608 chr6:110059615 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_27123 0 0 1 0 2 Cytosol 1 0.500231644886645 1 0.999536710226709 hm5C_site_27604 DeepMRMD:1;iRNA_m5C:0.999536710226709 27605 chr8 121267516 121267516 1 + T G LUAD 121267525 + 121267505 121267545 41 GCCAAACATGTTGAAATGACCAGCTTGTGTGCCCACTGGCA GCCAAACATGTGGAAATGACCAGCTTGTGTGCCCACTGGCA < 41bp 1 0.43240029769641 1 0.28871476650238 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121267525 chr8:121267516 synonymous SNV . 0 12 hm5C_associated_SNPs_27124 0 0 0 0 0 Ribosome 1 0.500231405235436 1 0.999537189529129 hm5C_site_27605 DeepMRMD:1;iRNA_m5C:0.999537189529129 27606 chr4 126337745 126337745 1 + G C LUAD 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCCCTTT < 41bp 1 0.641366398297072 1 0.947606086730957 experiment 0.717267203405856 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337745 nonsynonymous SNV 0.003 1 37 hm5C_associated_SNPs_27125 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643554698 0.104787826538086 0.999536712890604 hm5C_site_27606 DeepMRMD:0.104787826538086;iRNA_m5C:0.999536712890604 27607 chr19 47491246 47491246 1 + G T LUAD 47491265 + 47491245 47491285 41 GGACTGAGCACGGAAGGCATCTACCGGGTCAGCGGGAACAA GTACTGAGCACGGAAGGCATCTACCGGGTCAGCGGGAACAA < 41bp 1 0.356904066349918 1 0.333994686603546 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491265 chr19:47491246 nonsynonymous SNV 0.524 4 2 hm5C_associated_SNPs_27126 0 0 1 0 2 Ribosome 1 0.500231643921388 1 0.999536712157225 hm5C_site_27607 DeepMRMD:1;iRNA_m5C:0.999536712157225 27608 chr7 142459828 142459828 1 + C A LUAD 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCAAT < 41bp 1 0.164872410419702 1 0.0358678102493286 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459828 nonsynonymous SNV 0.001 3 40 hm5C_associated_SNPs_27127 0 0 0 0 1 Cytosol 1 0.500231464373976 1 0.999537071252047 hm5C_site_27608 DeepMRMD:1;iRNA_m5C:0.999537071252047 27609 chr7 142459828 142459828 1 + C A LUAD 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCAATG < 41bp 1 0.167872987167928 1 0.0463005602359772 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459828 nonsynonymous SNV 0.001 3 39 hm5C_associated_SNPs_27128 0 0 0 0 1 Cytosol 1 0.500231643921088 1 0.999536712157824 hm5C_site_27609 DeepMRMD:1;iRNA_m5C:0.999536712157824 27610 chr7 142459828 142459828 1 + C A LUAD 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCAATGG < 41bp 1 0.648887572979207 1 0.0313005149364471 experiment 0.702224854041587 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459828 nonsynonymous SNV 0.001 3 38 hm5C_associated_SNPs_27129 0 0 0 0 1 Cytosol 1 0.50023164383624 1 0.999536712327521 hm5C_site_27610 DeepMRMD:1;iRNA_m5C:0.999536712327521 27611 chr7 142459828 142459828 1 + C A LUAD 142459813 + 142459793 142459833 41 GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCAATGGCA < 41bp 1 0.257758153836124 1 0.074379563331604 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459813 chr7:142459828 nonsynonymous SNV 0.001 3 36 hm5C_associated_SNPs_27130 0 0 0 0 1 Cytosol 1 0.500231628657854 1 0.999536742684293 hm5C_site_27611 DeepMRMD:1;iRNA_m5C:0.999536742684293 27612 chr7 142459828 142459828 1 + C A LUAD 142459814 + 142459794 142459834 41 TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCAATGGCAC < 41bp 1 0.465215080878135 1 0.11024683713913 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459814 chr7:142459828 nonsynonymous SNV 0.001 3 35 hm5C_associated_SNPs_27131 0 0 0 0 1 Cytosol 1 0.500231643359297 1 0.999536713281407 hm5C_site_27612 DeepMRMD:1;iRNA_m5C:0.999536713281407 27613 chr7 142459828 142459828 1 + C A LUAD 142459816 + 142459796 142459836 41 CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA CACCATCTCTCTGCCCACCGCCCCTCCAGCCAATGGCACGA < 41bp 1 0.243702497274983 1 0.337568819522858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459816 chr7:142459828 nonsynonymous SNV 0.001 3 33 hm5C_associated_SNPs_27132 0 0 0 0 1 Cytosol 1 0.50023164224911 1 0.999536715501779 hm5C_site_27613 DeepMRMD:1;iRNA_m5C:0.999536715501779 27614 chr7 142459828 142459828 1 + C A LUAD 142459817 + 142459797 142459837 41 ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA ACCATCTCTCTGCCCACCGCCCCTCCAGCCAATGGCACGAA < 41bp 1 0.119864740062341 1 0.682848811149597 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459817 chr7:142459828 nonsynonymous SNV 0.001 3 32 hm5C_associated_SNPs_27133 0 0 0 0 1 Cytosol 1 0.500231643921101 0.634302377700806 0.999536712157798 hm5C_site_27614 DeepMRMD:0.634302377700806;iRNA_m5C:0.999536712157798 27615 chr7 142459828 142459828 1 + C A LUAD 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CCATCTCTCTGCCCACCGCCCCTCCAGCCAATGGCACGAAG < 41bp 1 0.13189280872898 1 0.333656966686249 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459828 nonsynonymous SNV 0.001 3 31 hm5C_associated_SNPs_27134 0 0 0 0 1 Cytosol 1 0.500231474519698 1 0.999537050960604 hm5C_site_27615 DeepMRMD:1;iRNA_m5C:0.999537050960604 27616 chr7 142459828 142459828 1 + C A LUAD 142459819 + 142459799 142459839 41 CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT CATCTCTCTGCCCACCGCCCCTCCAGCCAATGGCACGAAGT < 41bp 1 0.671784671064639 1 0.95698493719101 experiment 0.656430657870722 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459819 chr7:142459828 nonsynonymous SNV 0.001 3 30 hm5C_associated_SNPs_27135 0 0 0 0 1 Cytosol 1 0.500231643921104 0.0860301256179801 0.999536712157792 hm5C_site_27616 DeepMRMD:0.0860301256179801;iRNA_m5C:0.999536712157792 27617 chr7 142459828 142459828 1 + C A LUAD 142459821 + 142459801 142459841 41 TCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGC TCTCTCTGCCCACCGCCCCTCCAGCCAATGGCACGAAGTGC < 41bp 1 0.291242054749449 1 0.498114913702011 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459821 chr7:142459828 nonsynonymous SNV 0.001 3 28 hm5C_associated_SNPs_27136 0 0 0 0 1 Cytosol 1 0.500231665709228 1 0.999536668581544 hm5C_site_27617 DeepMRMD:1;iRNA_m5C:0.999536668581544 27618 chr7 142459828 142459828 1 + C A LUAD 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTCTCTGCCCACCGCCCCTCCAGCCAATGGCACGAAGTGCC < 41bp 1 0.435654925595258 1 0.505254149436951 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459828 nonsynonymous SNV 0.001 3 27 hm5C_associated_SNPs_27137 0 0 0 0 1 Cytosol 1 0.500231643921093 0.989491701126098 0.999536712157815 hm5C_site_27618 DeepMRMD:0.989491701126098;iRNA_m5C:0.999536712157815 27619 chr7 142459828 142459828 1 + C A LUAD 142459825 + 142459805 142459845 41 TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCA TCTGCCCACCGCCCCTCCAGCCAATGGCACGAAGTGCCTCA < 41bp 1 0.350685839284634 1 0.150812953710556 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459825 chr7:142459828 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_27138 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27619 DeepMRMD:1;iRNA_m5C:0.999536712157815 27620 chr7 142459828 142459828 1 + C A LUAD 142459826 + 142459806 142459846 41 CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCAT CTGCCCACCGCCCCTCCAGCCAATGGCACGAAGTGCCTCAT < 41bp 1 0.62126561274848 1 0.392366290092468 experiment 0.757468774503041 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459826 chr7:142459828 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_27139 0 0 0 0 1 Cytosol 1 0.500231643921077 1 0.999536712157846 hm5C_site_27620 DeepMRMD:1;iRNA_m5C:0.999536712157846 27621 chr7 142459828 142459828 1 + C A LUAD 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTCCAGCCAATGGCACGAAGTGCCTCATCTCTGGCT < 41bp 1 0.659799067698963 1 0.265079081058502 experiment 0.680401864602075 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459828 nonsynonymous SNV 0.001 3 15 hm5C_associated_SNPs_27140 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27621 DeepMRMD:1;iRNA_m5C:0.999536712157815 27622 chr7 142459828 142459828 1 + C A LUAD 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCAATGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA < 41bp 1 0.425100607967218 1 0.0470782816410065 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459828 nonsynonymous SNV 0.001 3 8 hm5C_associated_SNPs_27141 0 0 0 0 1 Cytosol 1 0.500231643822006 1 0.999536712355989 hm5C_site_27622 DeepMRMD:1;iRNA_m5C:0.999536712355989 27623 chr7 142459828 142459828 1 + C A LUAD 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCAATGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC < 41bp 1 0.525781944341437 1 0.0590893626213074 experiment 0.948436111317126 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459828 nonsynonymous SNV 0.001 3 7 hm5C_associated_SNPs_27142 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_27623 DeepMRMD:1;iRNA_m5C:0.999536712157815 27624 chr7 142459828 142459828 1 + C A LUAD 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCAATGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC < 41bp 1 0.518765205414634 1 0.0149041414260864 experiment 0.962469589170732 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459828 nonsynonymous SNV 0.001 3 5 hm5C_associated_SNPs_27143 0 0 0 0 1 Cytosol 1 0.500231643736272 1 0.999536712527457 hm5C_site_27624 DeepMRMD:1;iRNA_m5C:0.999536712527457 27625 chr3 49713158 49713158 1 + A G LUAD 49713144 + 49713124 49713164 41 CAGACTGCTGAGCAGAGAGTCTCCTTCAGGCACCATGAAAG CAGACTGCTGAGCAGAGAGTCTCCTTCAGGCACCGTGAAAG < 41bp 1 0.324421664952029 1 0.21526312828064 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713144 chr3:49713158 nonsynonymous SNV 0.988 0 35 hm5C_associated_SNPs_27145 0 0 1 0 2 Cytosol 1 0.500233433754776 1 0.999533132490448 hm5C_site_27625 DeepMRMD:1;iRNA_m5C:0.999533132490448 27626 chr20 57484830 57484830 1 + G T LUAD 57484828 + 57484808 57484848 41 CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC CCAACCGCCTGCAGGAGGCTCTTAACCTCTTCAAGAGCATC < 41bp 1 0.147692767658799 1 0.125832378864288 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNAS ENSG00000087460 CDS Human protein_coding chr20:57484828 chr20:57484830 synonymous SNV . 0 23 hm5C_associated_SNPs_27146 0 0 1 0 2 Cytosol 1 0.500231644129771 1 0.999536711740457 hm5C_site_27626 DeepMRMD:1;iRNA_m5C:0.999536711740457 27627 chr8 145727030 145727030 1 + C A LUAD 145727024 + 145727004 145727044 41 GCTGAGCCCCCTGGACAGCACCACCCCCCACACCCTGGTCC GCTGAGCCCCCTGGACAGCACCACCCACCACACCCTGGTCC < 41bp 1 0.150555218914279 1 0.053245335817337 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145727024 chr8:145727030 nonsynonymous SNV 0.000 1 27 hm5C_associated_SNPs_27148 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_27627 DeepMRMD:1;iRNA_m5C:0.999536712157814 27628 chr7 94057008 94057008 1 + G A LUAD 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC CAATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC < 41bp 1 0.104127192494915 1 0.0187558829784393 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057008 nonsynonymous SNV 0.977 2 2 hm5C_associated_SNPs_27151 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642720676 1 0.999536714558648 hm5C_site_27628 DeepMRMD:1;iRNA_m5C:0.999536714558648 27629 chr2 27280267 27280267 1 + G T LUAD 27280287 + 27280267 27280307 41 GGCTTTCCCCTCCAGATACACTGTGGAACTATTTGAGCAGG TGCTTTCCCCTCCAGATACACTGTGGAACTATTTGAGCAGG < 41bp 1 0.527419802490711 1 0.312748491764069 experiment 0.945160395018578 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280287 chr2:27280267 synonymous SNV . 0 1 hm5C_associated_SNPs_27152 0 0 1 0 2 Cytosol 1 0.500231643922848 1 0.999536712154305 hm5C_site_27629 DeepMRMD:1;iRNA_m5C:0.999536712154305 27630 chr16 12662416 12662416 1 + G T LUAD 12662431 + 12662411 12662451 41 TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA TTCCCTCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA < 41bp 1 0.312612112743434 1 0.715565085411072 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662431 chr16:12662416 nonsynonymous SNV 0.921 2 6 hm5C_associated_SNPs_27153 0 0 0 0 1 Nucleus 1 0.500231643921092 0.568869829177856 0.999536712157815 hm5C_site_27630 DeepMRMD:0.568869829177856;iRNA_m5C:0.999536712157815 27631 chr16 12662416 12662416 1 + G T LUAD 12662432 + 12662412 12662452 41 TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC TCCCTCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC < 41bp 1 0.32138290399637 1 0.550542533397675 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662432 chr16:12662416 nonsynonymous SNV 0.921 2 5 hm5C_associated_SNPs_27154 0 0 0 0 1 Nucleus 1 0.500231643921092 0.89891493320465 0.999536712157815 hm5C_site_27631 DeepMRMD:0.89891493320465;iRNA_m5C:0.999536712157815 27632 chr16 12662416 12662416 1 + G T LUAD 12662433 + 12662413 12662453 41 CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC CCCTCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC < 41bp 1 0.436629461933197 1 0.895554184913635 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662433 chr16:12662416 nonsynonymous SNV 0.921 2 4 hm5C_associated_SNPs_27155 0 0 0 0 1 Nucleus 1 0.500231643921092 0.20889163017273 0.999536712157815 hm5C_site_27632 DeepMRMD:0.20889163017273;iRNA_m5C:0.999536712157815 27633 chr14 38679155 38679155 1 + C T LUAD 38679144 + 38679124 38679164 41 TAAACCTGGGCGTGTGGGTGCTATCGCTGCTCGTCATCCTG TAAACCTGGGCGTGTGGGTGCTATCGCTGCTTGTCATCCTG < 41bp 1 0.187697294846411 1 0.0857303440570831 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSTR1 ENSG00000139874 CDS Human protein_coding chr14:38679144 chr14:38679155 synonymous SNV . 0 32 hm5C_associated_SNPs_27156 0 0 0 0 0 nucleus 1 0.500231643904154 1 0.999536712191691 hm5C_site_27633 DeepMRMD:1;iRNA_m5C:0.999536712191691 27634 chr20 11900381 11900381 1 + G T LUAD 11900386 + 11900366 11900406 41 TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCGATGTT TATGTTTTAGCTGTTTGGAGCTCTGTGTTCCATGCGATGTT < 41bp 1 0.188567692844188 1 0.120908200740814 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900386 chr20:11900381 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_27157 0 0 1 0 1 Cytosol 1 0.500217377193393 1 0.999565245613214 hm5C_site_27634 DeepMRMD:1;iRNA_m5C:0.999565245613214 27635 chr19 11105642 11105642 1 + G T LUAD 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACTAGCGG < 41bp 1 0.618162834106972 1 0.733420372009277 experiment 0.763674331786055 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105642 stopgain 0.030 1 36 hm5C_associated_SNPs_27158 0 0 1 0 1 Nucleus 1 0.500231643921092 0.533159255981446 0.999536712157816 hm5C_site_27635 DeepMRMD:0.533159255981446;iRNA_m5C:0.999536712157816 27636 chr11 25004827 25004827 1 + G T LUAD 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCCAGATGCAGCTGCCAAAAGCAAGGTACCTA < 41bp 1 0.262849624282167 1 0.12959235906601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004827 synonymous SNV . 0 22 hm5C_associated_SNPs_27159 0 0 0 0 1 exosome 1 0.500231643921088 1 0.999536712157823 hm5C_site_27636 DeepMRMD:1;iRNA_m5C:0.999536712157823 27637 chr19 46509878 46509878 1 + G T LUAD 46509891 + 46509871 46509911 41 CGGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC CGGAACCTCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC < 41bp 1 0.0941541375307178 1 0.0712307393550873 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509891 chr19:46509878 nonsynonymous SNV 0.944 1 8 hm5C_associated_SNPs_27160 0 0 1 0 1 chromatin 1 0.50023164392103 1 0.999536712157939 hm5C_site_27637 DeepMRMD:1;iRNA_m5C:0.999536712157939 27638 chr19 46509878 46509878 1 + G T LUAD 46509892 + 46509872 46509912 41 GGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCCC GGAACCTCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCCC < 41bp 1 0.238829697320037 1 0.0577437579631805 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509892 chr19:46509878 nonsynonymous SNV 0.944 1 7 hm5C_associated_SNPs_27161 0 0 1 0 1 chromatin 1 0.500231643921273 1 0.999536712157453 hm5C_site_27638 DeepMRMD:1;iRNA_m5C:0.999536712157453 27639 chr2 121554950 121554950 1 + G T LUAD 121554962 + 121554942 121554982 41 AAAAGTGGGATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG AAAAGTGGTATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG < 41bp 1 0.265802431949076 1 0.494011968374252 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLI2 ENSG00000074047 CDS Human protein_coding chr2:121554962 chr2:121554950 synonymous SNV . 0 9 hm5C_associated_SNPs_27162 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643955188 1 0.999536712089623 hm5C_site_27639 DeepMRMD:1;iRNA_m5C:0.999536712089623 27640 chr11 25004819 25004819 1 + G T LUAD 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCCATATGCAGCGGCCAAAAGCAAGGTACCTA < 41bp 1 0.270284326026891 1 0.356850862503052 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004819 nonsynonymous SNV 0.008 0 14 hm5C_associated_SNPs_27163 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27640 DeepMRMD:1;iRNA_m5C:0.999536712157815 27641 chr11 95546154 95546154 1 + G C LUAD 95546139 + 95546119 95546159 41 CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGGATTCA CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGCATTCA < 41bp 1 0.482647014289044 1 0.0600002408027649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95546139 chr11:95546154 nonsynonymous SNV 0.997 4 36 hm5C_associated_SNPs_27164 0 0 1 0 3 Nucleus 1 0.500231643911544 1 0.999536712176911 hm5C_site_27641 DeepMRMD:1;iRNA_m5C:0.999536712176911 27642 chr14 75360058 75360058 1 + A T LUAD 75360054 + 75360034 75360074 41 CCTCTTTTCATTTTCAGTGTCTGCAGTAAAACCCACTGTTG CCTCTTTTCATTTTCAGTGTCTGCTGTAAAACCCACTGTTG < 41bp 1 0.588688467477529 1 0.0855450928211212 experiment 0.822623065044942 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DLST ENSG00000119689 CDS Human protein_coding chr14:75360054 chr14:75360058 synonymous SNV . 0 25 hm5C_associated_SNPs_27165 0 0 1 1 1 Ribosome 1 0.500231643890994 1 0.999536712218012 hm5C_site_27642 DeepMRMD:1;iRNA_m5C:0.999536712218012 27643 chr7 134215412 134215412 1 + G T LUAD 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTTAAAG < 41bp 1 0.234443481968895 1 0.292027294635773 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215412 synonymous SNV . 0 37 hm5C_associated_SNPs_27166 0 0 1 0 1 exosome 1 0.500172260353488 1 0.999655479293025 hm5C_site_27643 DeepMRMD:1;iRNA_m5C:0.999655479293025 27644 chr19 7589950 7589950 1 + C G LUAD 7589936 + 7589916 7589956 41 CACCCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC CACCCCCAGAAGAGGAAGACCTTCGCCGTCGTCTGAAATAC < 41bp 1 0.30935363809214 1 0.15230792760849 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589936 chr19:7589950 synonymous SNV . 0 35 hm5C_associated_SNPs_27167 0 0 1 0 0 chromatin 1 0.500250466459842 1 0.999499067080315 hm5C_site_27644 DeepMRMD:1;iRNA_m5C:0.999499067080315 27645 chr2 32897384 32897384 1 + G C LUAD 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG TAAAGTTACCAGATTGTGAACAGTTCCAGATGCCGGATCTG < 41bp 1 0.154552084250776 1 0.147445827722549 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897384 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_27168 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27645 DeepMRMD:1;iRNA_m5C:0.999536712157815 27646 chr19 21300980 21300980 1 + G T LUAD 21300990 + 21300970 21301010 41 AATTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACA AATTCAGCAGTGCATGGTGGCTCATGCCTGTAATCCCAACA < 41bp 1 0.348901093266912 1 0.107734739780426 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300990 chr19:21300980 nonsynonymous SNV 0.006 2 11 hm5C_associated_SNPs_27169 0 0 1 1 0 Cytosol 1 0.500231643848089 1 0.999536712303823 hm5C_site_27646 DeepMRMD:1;iRNA_m5C:0.999536712303823 27647 chr19 21300980 21300980 1 + G T LUAD 21300992 + 21300972 21301012 41 TTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT TTCAGCAGTGCATGGTGGCTCATGCCTGTAATCCCAACACT < 41bp 1 0.221796486442202 1 0.120239436626434 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300992 chr19:21300980 nonsynonymous SNV 0.006 2 9 hm5C_associated_SNPs_27170 0 0 1 1 0 Cytosol 1 0.500232373508539 1 0.999535252982921 hm5C_site_27647 DeepMRMD:1;iRNA_m5C:0.999535252982921 27648 chr19 21300980 21300980 1 + G T LUAD 21300996 + 21300976 21301016 41 GCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGA GCAGTGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGA < 41bp 1 0.146201312974274 1 0.0919382274150848 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300996 chr19:21300980 nonsynonymous SNV 0.006 2 5 hm5C_associated_SNPs_27171 0 0 1 1 0 Cytosol 1 0.50023164828823 1 0.999536703423541 hm5C_site_27648 DeepMRMD:1;iRNA_m5C:0.999536703423541 27649 chr19 21300980 21300980 1 + G T LUAD 21300997 + 21300977 21301017 41 CAGGGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGAG CAGTGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGAG < 41bp 1 0.597344320411712 1 0.080018937587738 experiment 0.805311359176575 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300997 chr19:21300980 nonsynonymous SNV 0.006 2 4 hm5C_associated_SNPs_27172 0 0 1 1 0 Cytosol 1 0.500232943996976 1 0.999534112006047 hm5C_site_27649 DeepMRMD:1;iRNA_m5C:0.999534112006047 27650 chr2 27886959 27886959 1 + G A LUAD 27886967 + 27886947 27886987 41 GACTCCAATTCTGGGGAGCCCGACATCCCTCCTCCTCAGCC GACTCCAATTCTAGGGAGCCCGACATCCCTCCTCCTCAGCC < 41bp 1 0.679515535972859 1 0.241856306791306 experiment 0.640968928054282 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27886967 chr2:27886959 nonsynonymous SNV 0.004 0 13 hm5C_associated_SNPs_27173 0 0 1 0 0 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_27650 DeepMRMD:1;iRNA_m5C:0.999536712157815 27651 chr2 118579625 118579625 1 + G T LUAD 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCATTGTGGCCACACCAGGCCGTCTGCTTGACCAT < 41bp 1 0.544031130813771 1 0.154429614543915 experiment 0.911937738372458 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579625 synonymous SNV . 0 35 hm5C_associated_SNPs_27174 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_27651 DeepMRMD:1;iRNA_m5C:0.999536712157815 27652 chr2 118579626 118579626 1 + G T LUAD 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGTACCAT < 41bp 1 0.497212149831313 1 0.169942915439606 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579626 nonsynonymous SNV 0.992 4 36 hm5C_associated_SNPs_27175 0 0 1 0 1 Nucleus 1 0.50023164392133 1 0.99953671215734 hm5C_site_27652 DeepMRMD:1;iRNA_m5C:0.99953671215734 27653 chr5 140076603 140076603 1 + G A LUAD 140076598 + 140076578 140076618 41 AACAAGCAGGCCCTGGAGGGCCTGGGAGACCTAAAGCTGCT AACAAGCAGGCCCTGGAGGGCCTGGAAGACCTAAAGCTGCT < 41bp 1 0.173601786096942 1 0.245291084051132 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076598 chr5:140076603 nonsynonymous SNV 0.757 0 26 hm5C_associated_SNPs_27176 0 0 1 0 2 Cytosol 1 0.500231643921276 1 0.999536712157448 hm5C_site_27653 DeepMRMD:1;iRNA_m5C:0.999536712157448 27654 chr11 65824773 65824773 1 + C T LUAD 65824781 + 65824761 65824801 41 GCCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC GCCCCACTCCTATAGTTTTGCCCATGGGAGCCCCTGTTCCC < 41bp 1 0.379560780909505 1 0.1583571434021 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824781 chr11:65824773 nonsynonymous SNV 0.985 0 13 hm5C_associated_SNPs_27177 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27654 DeepMRMD:1;iRNA_m5C:0.999536712157815 27655 chr11 65824773 65824773 1 + C T LUAD 65824782 + 65824762 65824802 41 CCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC CCCCACTCCTATAGTTTTGCCCATGGGAGCCCCTGTTCCCC < 41bp 1 0.259980970711903 1 0.138499230146408 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824782 chr11:65824773 nonsynonymous SNV 0.985 0 12 hm5C_associated_SNPs_27178 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27655 DeepMRMD:1;iRNA_m5C:0.999536712157815 27656 chr9 33917170 33917170 1 + G A LUAD 33917160 + 33917140 33917180 41 GACGACTTGTATGATGACGACATTGATGATGAAGATGAGGA GACGACTTGTATGATGACGACATTGATGATAAAGATGAGGA < 41bp 1 0.0836723144749557 1 0.0811320543289185 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917160 chr9:33917170 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_27179 0 0 1 0 0 Cytosol 1 0.500229232575247 1 0.999541534849506 hm5C_site_27656 DeepMRMD:1;iRNA_m5C:0.999541534849506 27657 chr9 135933328 135933328 1 + T C LUAD 135933325 + 135933305 135933345 41 GACTTCAAGCCATCCGACGGCAGTGAAAACGAAATGGAGAC GACTTCAAGCCATCCGACGGCAGCGAAAACGAAATGGAGAC < 41bp 1 0.57758914102913 1 0.705822229385376 experiment 0.844821717941741 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135933325 chr9:135933328 synonymous SNV . 0 24 hm5C_associated_SNPs_27180 0 0 1 0 0 Ribosome 1 0.500231643921092 0.588355541229248 0.999536712157815 hm5C_site_27657 DeepMRMD:0.588355541229248;iRNA_m5C:0.999536712157815 27658 chr3 25542753 25542753 1 + C T LUAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACTAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.280208805657712 1 0.0811055600643158 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542753 synonymous SNV . 0 3 hm5C_associated_SNPs_27181 0 0 1 0 2 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_27658 DeepMRMD:1;iRNA_m5C:0.999536712157815 27659 chr22 44368118 44368118 1 + G T LUAD 44368123 + 44368103 44368143 41 TTTTTTTATTTAGGTGATGACGCACTTCCAAATGGGTTAGA TTTTTTTATTTAGGTTATGACGCACTTCCAAATGGGTTAGA < 41bp 1 0.161437310038381 1 0.130294263362885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44368123 chr22:44368118 nonsynonymous SNV 0.976 1 16 hm5C_associated_SNPs_27182 0 0 1 0 1 Cytosol 1 0.500231643921131 1 0.999536712157739 hm5C_site_27659 DeepMRMD:1;iRNA_m5C:0.999536712157739 27660 chr1 223934731 223934731 1 + G T LUAD 223934721 + 223934701 223934741 41 TCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT TCAACGGATGCTATGAAGCGCTATCAGGGGTTGCCACCACT < 41bp 1 0.0590191511510538 1 0.050122082233429 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934721 chr1:223934731 nonsynonymous SNV 0.991 5 31 hm5C_associated_SNPs_27184 0 0 1 0 1 Ribosome 1 0.500231643920926 1 0.999536712158147 hm5C_site_27660 DeepMRMD:1;iRNA_m5C:0.999536712158147 27661 chr19 42880607 42880607 1 + G T LUAD 42880609 + 42880589 42880629 41 CCCCTGCTGCTGACAGGGGCCGGTGGGCCCTGGGGACCCAT CCCCTGCTGCTGACAGGGTCCGGTGGGCCCTGGGGACCCAT < 41bp 1 0.276483677076559 1 0.883685886859894 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42880609 chr19:42880607 nonsynonymous SNV 0.510 0 19 hm5C_associated_SNPs_27185 0 0 0 0 0 Endoplasmic reticulum 1 0.500231599667944 0.232628226280212 0.999536800664113 hm5C_site_27661 DeepMRMD:0.232628226280212;iRNA_m5C:0.999536800664113 27662 chr7 45662261 45662261 1 + G T LUAD 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTCACTGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.389296674614441 1 0.607295036315918 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662261 synonymous SNV . 0 8 hm5C_associated_SNPs_27186 0 0 1 0 2 Nucleus 1 0.500231599505144 0.785409927368164 0.999536800989712 hm5C_site_27662 DeepMRMD:0.785409927368164;iRNA_m5C:0.999536800989712 27663 chr3 40499405 40499405 1 + G T LUAD 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA TGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA < 41bp 1 0.370258331320989 1 0.0497450530529022 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499405 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_27187 0 0 1 0 1 Ribosome 1 0.500231643927529 1 0.999536712144943 hm5C_site_27663 DeepMRMD:1;iRNA_m5C:0.999536712144943 27664 chr8 145150838 145150838 1 + C G LUAD 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGCAGGGGGTGCGGGGCTGGCCATGGCTGTGCATTCGGCTG < 41bp 1 0.553238883476513 1 0.458281219005585 experiment 0.893522233046974 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150838 nonsynonymous SNV 0.868 1 29 hm5C_associated_SNPs_27188 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_27664 DeepMRMD:1;iRNA_m5C:0.999536712157815 27665 chr9 135926314 135926314 1 + G A LUAD 135926303 + 135926283 135926323 41 AGCCACTGGAGGCTGCAGCCCAGACGTGGAGGAGAGTCTGC AGCCACTGGAGGCTGCAGCCCAGACGTGGAGAAGAGTCTGC < 41bp 1 0.482064337741717 1 0.321490257978439 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135926303 chr9:135926314 synonymous SNV . 0 32 hm5C_associated_SNPs_27189 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27665 DeepMRMD:1;iRNA_m5C:0.999536712157815 27666 chr8 48874123 48874123 1 + G A LUAD 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCAA < 41bp 1 0.171026644982051 1 0.0730916857719421 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874123 nonsynonymous SNV 0.735 0 40 hm5C_associated_SNPs_27190 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_27666 DeepMRMD:1;iRNA_m5C:0.999536712157815 27667 chr1 28169792 28169792 1 + G T LUAD 28169778 + 28169758 28169798 41 GAAATCTGGACATTCAAAGACCAAAGAGGAAGAGGAAGAAC GAAATCTGGACATTCAAAGACCAAAGAGGAAGAGTAAGAAC < 41bp 1 0.433826085066363 1 0.142889887094498 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28169778 chr1:28169792 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_27191 0 0 1 0 2 Ribosome 1 0.500219550589535 1 0.99956089882093 hm5C_site_27667 DeepMRMD:1;iRNA_m5C:0.99956089882093 27668 chr7 101845298 101845298 1 + G A LUAD 101845280 + 101845260 101845300 41 CTGAGTCTGACCGGGGCCAGCCGCAGCGAGACACCACAGAA CTGAGTCTGACCGGGGCCAGCCGCAGCGAGACACCACAAAA < 41bp 1 0.344923857591285 1 0.4021957218647 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101845280 chr7:101845298 synonymous SNV . 0 39 hm5C_associated_SNPs_27192 0 0 0 0 0 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27668 DeepMRMD:1;iRNA_m5C:0.999536712157815 27669 chr17 38450672 38450672 1 + G C LUAD 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTAGACAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT < 41bp 1 0.513297253439372 1 0.271117269992828 experiment 0.973405493121256 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450672 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_27193 0 0 1 0 2 Nucleus 1 0.500231643921175 1 0.99953671215765 hm5C_site_27669 DeepMRMD:1;iRNA_m5C:0.99953671215765 27670 chr12 49666960 49666960 1 + G A LUAD 49666979 + 49666959 49666999 41 GGAGGTTGGAGCAGATAGTGCTGACGGAGAGGATGAGGGTG GAAGGTTGGAGCAGATAGTGCTGACGGAGAGGATGAGGGTG < 41bp 1 0.454378996572388 1 0.119721323251724 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TUBA1C ENSG00000167553 CDS Human protein_coding chr12:49666979 chr12:49666960 nonsynonymous SNV 0.999 4 2 hm5C_associated_SNPs_27194 0 0 1 0 0 Cytosol 1 0.500231621748048 1 0.999536756503905 hm5C_site_27670 DeepMRMD:1;iRNA_m5C:0.999536756503905 27671 chr12 6646140 6646140 1 + G T LUAD 6646142 + 6646122 6646162 41 CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA CGCTGAGTACGTCGTGGATTCCACTGGCGTCTTCACCACCA < 41bp 1 0.499962499472605 1 0.291548937559128 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646142 chr12:6646140 nonsynonymous SNV 0.984 2 19 hm5C_associated_SNPs_27195 0 0 1 0 2 Ribosome 1 0.500231633752369 1 0.999536732495262 hm5C_site_27671 DeepMRMD:1;iRNA_m5C:0.999536732495262 27672 chr19 30936293 30936293 1 + G A LUAD 30936308 + 30936288 30936328 41 TTTTTGTCACACGGGCTGAACCAGACTCTCGAGTATAACCT TTTTTATCACACGGGCTGAACCAGACTCTCGAGTATAACCT < 41bp 1 0.319444919054909 1 0.0574756562709808 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936308 chr19:30936293 synonymous SNV . 0 6 hm5C_associated_SNPs_27197 0 0 1 0 0 exosome 1 0.500231643921308 1 0.999536712157384 hm5C_site_27672 DeepMRMD:1;iRNA_m5C:0.999536712157384 27673 chr11 61897767 61897767 1 + G A LUAD 61897785 + 61897765 61897805 41 AAGCTCAGGATTGCGCAGGTCTCCCCTGGCCCACGGGACTC AAACTCAGGATTGCGCAGGTCTCCCCTGGCCCACGGGACTC < 41bp 1 0.396654894163593 1 0.200185686349869 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897785 chr11:61897767 synonymous SNV . 0 3 hm5C_associated_SNPs_27199 0 0 1 0 0 chromatin 1 0.500231635562259 1 0.999536728875482 hm5C_site_27673 DeepMRMD:1;iRNA_m5C:0.999536728875482 27674 chr15 31233896 31233896 1 + A G LUAD 31233902 + 31233882 31233922 41 CATAGCAGGCCTCCAGGGGGCCACTGCGCTGTTGCCGCAGC CATAGCAGGCCTCCGGGGGGCCACTGCGCTGTTGCCGCAGC < 41bp 1 0.428451023887675 1 0.385336995124817 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTMR10 ENSG00000166912 CDS Human protein_coding chr15:31233902 chr15:31233896 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_27201 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27674 DeepMRMD:1;iRNA_m5C:0.999536712157815 27675 chr5 68425393 68425393 1 + A C LUAD 68425373 + 68425353 68425393 41 CTGGCCTAAGTACTGGATTTCATGATGTTCTGGCTATGACA CTGGCCTAAGTACTGGATTTCATGATGTTCTGGCTATGACC < 41bp 1 0.569059574846112 1 0.347192645072937 experiment 0.861880850307776 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68425373 chr5:68425393 synonymous SNV . 0 41 hm5C_associated_SNPs_27202 0 0 1 1 0 Ribosome 1 0.500231643921095 1 0.999536712157809 hm5C_site_27675 DeepMRMD:1;iRNA_m5C:0.999536712157809 27676 chr4 57180261 57180261 1 + G C LUAD 57180277 + 57180257 57180297 41 AACGGACACCCAGGCGAGGACAAGCCAACGTGGCACGAAGA AACGCACACCCAGGCGAGGACAAGCCAACGTGGCACGAAGA < 41bp 1 0.318903099631662 1 0.57067745923996 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180277 chr4:57180261 nonsynonymous SNV 0.849 3 5 hm5C_associated_SNPs_27203 0 0 0 0 1 cytosol 1 0.500231643921091 0.85864508152008 0.999536712157818 hm5C_site_27676 DeepMRMD:0.85864508152008;iRNA_m5C:0.999536712157818 27677 chr1 40882768 40882768 1 + G T LUAD 40882766 + 40882746 40882786 41 AGCTGCAATGGAACCTTACTCAGGTAAGCTACCCCATTTTA AGCTGCAATGGAACCTTACTCATGTAAGCTACCCCATTTTA < 41bp 1 0.546870322351617 1 0.587926387786865 experiment 0.906259355296767 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40882766 chr1:40882768 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_27204 0 0 1 0 1 Ribosome 1 0.500231643921094 0.82414722442627 0.999536712157813 hm5C_site_27677 DeepMRMD:0.82414722442627;iRNA_m5C:0.999536712157813 27678 chr2 48738497 48738497 1 + A T LUAD 48738508 + 48738488 48738528 41 ACAACTACCAAGAGGAGTTACGAGGATCAGTTAAGTATGAT ACAACTACCTAGAGGAGTTACGAGGATCAGTTAAGTATGAT < 41bp 1 0.599166707416356 1 0.659791231155396 experiment 0.801666585167287 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48738508 chr2:48738497 stopgain 1.000 1 10 hm5C_associated_SNPs_27205 0 0 1 0 1 Cytosol 1 0.500231643979376 0.680417537689208 0.999536712041248 hm5C_site_27678 DeepMRMD:0.680417537689208;iRNA_m5C:0.999536712041248 27679 chr5 32093041 32093041 1 + G A LUAD 32093044 + 32093024 32093064 41 TTCTAGTCTCAGCGGGGGACCAGCAAAGATTACAGTCTGTT TTCTAGTCTCAGCGGGGAACCAGCAAAGATTACAGTCTGTT < 41bp 1 0.196581830035777 1 0.64102977514267 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32093044 chr5:32093041 nonsynonymous SNV 0.747 0 18 hm5C_associated_SNPs_27206 0 0 0 0 2 chromatin 1 0.500231643920626 0.71794044971466 0.999536712158748 hm5C_site_27679 DeepMRMD:0.71794044971466;iRNA_m5C:0.999536712158748 27680 chr18 21474925 21474925 1 + A C LUAD 21474924 + 21474904 21474944 41 ACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT ACCTGGCCACCATGGGCGAGCCGCTCCGCCTGGTCAAGTCT < 41bp 1 0.0710290626110899 1 0.0609461963176727 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21474924 chr18:21474925 nonsynonymous SNV 0.975 1 22 hm5C_associated_SNPs_27207 0 0 0 0 1 Cytosol 1 0.500233689354293 1 0.999532621291413 hm5C_site_27680 DeepMRMD:1;iRNA_m5C:0.999532621291413 27681 chr16 70573038 70573038 1 + C A LUAD 70573018 + 70572998 70573038 41 TCTCACCAGGTTACTGAGATCCGGCTCAAATATTTTGATAC TCTCACCAGGTTACTGAGATCCGGCTCAAATATTTTGATAA < 41bp 1 0.187386641749055 1 0.67575079202652 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70573018 chr16:70573038 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_27208 0 0 1 0 2 Cytosol 1 0.50023164392185 0.64849841594696 0.999536712156299 hm5C_site_27681 DeepMRMD:0.64849841594696;iRNA_m5C:0.999536712156299 27682 chr10 112266699 112266699 1 + C A LUAD 112266700 + 112266680 112266720 41 TCCCTGCATCCAGGGTGGCCCAGTTGAAATCCTTCCCTTCC TCCCTGCATCCAGGGTGGCACAGTTGAAATCCTTCCCTTCC < 41bp 1 0.239092188444529 1 0.177406877279282 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUSP5 ENSG00000138166 CDS Human protein_coding chr10:112266700 chr10:112266699 nonsynonymous SNV 0.943 4 20 hm5C_associated_SNPs_27209 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_27682 DeepMRMD:1;iRNA_m5C:0.999536712157816 27683 chr20 47711286 47711286 1 + C G LUAD 47711273 + 47711253 47711293 41 CTTTCTTCCAATCCAGGACTCCATTATTACAGTCTTTGATT CTTTCTTCCAATCCAGGACTCCATTATTACAGTGTTTGATT < 41bp 1 0.0438745858593639 1 0.0669434666633606 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47711273 chr20:47711286 nonsynonymous SNV 0.996 2 34 hm5C_associated_SNPs_27210 0 0 1 0 1 Nucleus 1 0.500231643921057 1 0.999536712157886 hm5C_site_27683 DeepMRMD:1;iRNA_m5C:0.999536712157886 27684 chr7 128845610 128845610 1 + C A LUAD 128845621 + 128845601 128845641 41 ACCATGAGGCTTGGGGAGCCCACGTAGGTGTCTTGGGGACC ACCATGAGGATTGGGGAGCCCACGTAGGTGTCTTGGGGACC < 41bp 1 0.608089157378287 1 0.454896926879883 experiment 0.783821685243426 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128845621 chr7:128845610 nonsynonymous SNV 0.993 1 10 hm5C_associated_SNPs_27211 0 0 1 0 1 cytosol 1 0.500231643960796 1 0.999536712078408 hm5C_site_27684 DeepMRMD:1;iRNA_m5C:0.999536712078408 27685 chr7 100466171 100466171 1 + C A LUAD 100466155 + 100466135 100466175 41 CCTCCTGCCTACCGCACGGGCTCCCTGAAGCCAAATCCAGC CCTCCTGCCTACCGCACGGGCTCCCTGAAGCCAAATACAGC < 41bp 1 0.178326234068981 1 0.0270720422267914 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466155 chr7:100466171 nonsynonymous SNV 0.005 0 37 hm5C_associated_SNPs_27212 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_27685 DeepMRMD:1;iRNA_m5C:0.999536712157818 27686 chr3 101311551 101311551 1 + G C LUAD 101311550 + 101311530 101311570 41 ATAACCAGAAGCTGTGGGAGCGAAATATAAAATCTCATCTT ATAACCAGAAGCTGTGGGAGCCAAATATAAAATCTCATCTT < 41bp 1 0.493653087461195 1 0.442451387643814 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNP ENSG00000081154 CDS Human protein_coding chr3:101311550 chr3:101311551 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_27213 0 0 1 0 1 chromatin 1 0.500231643920949 1 0.999536712158102 hm5C_site_27686 DeepMRMD:1;iRNA_m5C:0.999536712158102 27687 chr2 209190010 209190010 1 + G T LUAD 209190000 + 209189980 209190020 41 GTTTTTGTTTGTAGAACAAACCAAGACACTGATGTTTTTTG GTTTTTGTTTGTAGAACAAACCAAGACACTTATGTTTTTTG < 41bp 1 0.0862567002060634 1 0.18374490737915 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209190000 chr2:209190010 synonymous SNV . 0 31 hm5C_associated_SNPs_27214 0 0 1 0 1 Nucleus 1 0.500411705313708 1 0.999176589372584 hm5C_site_27687 DeepMRMD:1;iRNA_m5C:0.999176589372584 27688 chr20 60768505 60768505 1 + G T LUAD 60768502 + 60768482 60768522 41 ACCTGCAAGGTGTTTCTCAGCAAGATTGAGGACCGTGTTTC ACCTGCAAGGTGTTTCTCAGCAATATTGAGGACCGTGTTTC < 41bp 1 0.475420189542996 1 0.0505549609661102 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTG2 ENSG00000101181 CDS Human protein_coding chr20:60768502 chr20:60768505 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_27215 0 0 1 0 1 Ribosome 1 0.500231469232336 1 0.999537061535328 hm5C_site_27688 DeepMRMD:1;iRNA_m5C:0.999537061535328 27689 chr17 27074265 27074265 1 + C T LUAD 27074259 + 27074239 27074279 41 TCTTCAAGTGCCCTGAGGACCAGCTTCCTCTGGACTATGCC TCTTCAAGTGCCCTGAGGACCAGCTTTCTCTGGACTATGCC < 41bp 1 0.486515888941734 1 0.218199610710144 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27074259 chr17:27074265 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_27216 0 0 1 0 2 Ribosome 1 0.500231644215673 1 0.999536711568655 hm5C_site_27689 DeepMRMD:1;iRNA_m5C:0.999536711568655 27690 chr21 33887132 33887132 1 + G C LUAD 33887128 + 33887108 33887148 41 TCTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCT TCTCTTCCTCCTGCAGCCCACCCGCAGAGAGCTGCCCTGCT < 41bp 1 0.195046066661131 1 0.543396532535553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887128 chr21:33887132 nonsynonymous SNV 0.962 4 25 hm5C_associated_SNPs_27217 0 0 0 1 1 Ribosome 1 0.500231643921092 0.913206934928894 0.999536712157815 hm5C_site_27690 DeepMRMD:0.913206934928894;iRNA_m5C:0.999536712157815 27691 chr21 33887132 33887132 1 + G C LUAD 33887129 + 33887109 33887149 41 CTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTG CTCTTCCTCCTGCAGCCCACCCGCAGAGAGCTGCCCTGCTG < 41bp 1 0.638728606085068 1 0.280873209238052 experiment 0.722542787829863 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887129 chr21:33887132 nonsynonymous SNV 0.962 4 24 hm5C_associated_SNPs_27218 0 0 0 1 1 Ribosome 1 0.500232264657978 1 0.999535470684045 hm5C_site_27691 DeepMRMD:1;iRNA_m5C:0.999535470684045 27692 chr21 33887132 33887132 1 + G C LUAD 33887130 + 33887110 33887150 41 TCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTGT TCTTCCTCCTGCAGCCCACCCGCAGAGAGCTGCCCTGCTGT < 41bp 1 0.642721813522434 1 0.532823145389557 experiment 0.714556372955132 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887130 chr21:33887132 nonsynonymous SNV 0.962 4 23 hm5C_associated_SNPs_27219 0 0 0 1 1 Ribosome 1 0.500231643921092 0.934353709220886 0.999536712157815 hm5C_site_27692 DeepMRMD:0.934353709220886;iRNA_m5C:0.999536712157815 27693 chr20 1905435 1905435 1 + C T LUAD 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGAGAACACTGGATCTAATGAACGGAATATCTATA < 41bp 1 0.142256340803427 1 0.042150467634201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905435 synonymous SNV . 0 34 hm5C_associated_SNPs_27220 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27693 DeepMRMD:1;iRNA_m5C:0.999536712157815 27694 chr16 89620293 89620293 1 + C T LUAD 89620301 + 89620281 89620321 41 GCCCATCTCCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA GCCCATCTCCTTTCCTGAGGCGCAGGAGGGCCTCATGGGCA < 41bp 1 0.658683870895436 1 0.438875168561935 experiment 0.682632258209129 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89620301 chr16:89620293 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_27221 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_27694 DeepMRMD:1;iRNA_m5C:0.999536712157816 27695 chr16 1889352 1889352 1 + G A LUAD 1889342 + 1889322 1889362 41 ATCAGTCAGATCAATCAGCACATGGAAACTGAGAAAGACAG ATCAGTCAGATCAATCAGCACATGGAAACTAAGAAAGACAG < 41bp 1 0.567446183888547 1 0.243174910545349 experiment 0.865107632222906 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MEIOB ENSG00000162039 CDS Human protein_coding chr16:1889342 chr16:1889352 synonymous SNV . 0 31 hm5C_associated_SNPs_27222 0 0 0 1 1 chromatin 1 0.500234181381817 1 0.999531637236366 hm5C_site_27695 DeepMRMD:1;iRNA_m5C:0.999531637236366 27696 chr19 11105607 11105607 1 + A C LUAD 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG CTGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG < 41bp 1 0.634670587015048 1 0.670882403850555 experiment 0.730658825969904 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105607 nonsynonymous SNV 0.902 4 1 hm5C_associated_SNPs_27223 0 0 1 0 1 Nucleus 1 0.500231643921093 0.65823519229889 0.999536712157814 hm5C_site_27696 DeepMRMD:0.65823519229889;iRNA_m5C:0.999536712157814 27697 chr3 49736441 49736441 1 + G A LUAD 49736459 + 49736439 49736479 41 TTGAGAACCTGTCCAGGGGCCTGGGTATGGCCTACTTCCCA TTAAGAACCTGTCCAGGGGCCTGGGTATGGCCTACTTCCCA < 41bp 1 0.569239412065805 1 0.293868601322174 experiment 0.86152117586839 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49736459 chr3:49736441 nonsynonymous SNV 0.989 0 3 hm5C_associated_SNPs_27225 0 0 1 0 1 Nucleus 1 0.500231643920668 1 0.999536712158664 hm5C_site_27697 DeepMRMD:1;iRNA_m5C:0.999536712158664 27698 chr11 71946456 71946456 1 + G A LUAD 71946459 + 71946439 71946479 41 GCTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACC GCTCCATGAAGGTGCGGATGCCCACGGAGCGCCTGGGCACC < 41bp 1 0.159401092668546 1 0.117874532938004 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946459 chr11:71946456 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_27226 0 0 1 0 1 Cytosol 1 0.500231643917247 1 0.999536712165505 hm5C_site_27698 DeepMRMD:1;iRNA_m5C:0.999536712165505 27699 chr11 71946456 71946456 1 + G A LUAD 71946460 + 71946440 71946480 41 CTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCC CTCCATGAAGGTGCGGATGCCCACGGAGCGCCTGGGCACCC < 41bp 1 0.360455786910173 1 0.0704125165939331 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946460 chr11:71946456 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_27227 0 0 1 0 1 Cytosol 1 0.50021103424228 1 0.999577931515441 hm5C_site_27699 DeepMRMD:1;iRNA_m5C:0.999577931515441 27700 chr11 71946456 71946456 1 + G A LUAD 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG ATGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG < 41bp 1 0.386139678700002 1 0.0423650145530701 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946456 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_27228 0 0 1 0 1 Cytosol 1 0.500231581590696 1 0.999536836818608 hm5C_site_27700 DeepMRMD:1;iRNA_m5C:0.999536836818608 27701 chrX 17705957 17705957 1 + C A LUAD 17705955 + 17705935 17705975 41 CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC CTTCCTCCCAGCCACAAGGCCAACCTGCGTGGAGGAGCTGC < 41bp 1 0.313026928850147 1 0.0380216538906097 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705955 chrX:17705957 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_27229 0 0 0 0 2 nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_27701 DeepMRMD:1;iRNA_m5C:0.999536712157816 27702 chr19 50002824 50002824 1 + A G LUAD 50002809 + 50002789 50002829 41 TCGTCACAGTGGGCGAGTGCCGGCCTCTGAGCAAGACAGTG TCGTCACAGTGGGCGAGTGCCGGCCTCTGAGCAAGGCAGTG < 41bp 1 0.585290974165466 1 0.412686616182327 experiment 0.829418051669068 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS11 ENSG00000142534 CDS Human protein_coding chr19:50002809 chr19:50002824 nonsynonymous SNV 0.994 2 36 hm5C_associated_SNPs_27231 0 0 1 0 1 chromatin 1 0.500231646338375 1 0.999536707323251 hm5C_site_27702 DeepMRMD:1;iRNA_m5C:0.999536707323251 27703 chr3 39110337 39110337 1 + G T LUAD 39110322 + 39110302 39110342 41 GGCCATGAATCAACTGGGAACAATCATTGTATCAGGGTCCA GGCCATGAATCAACTGGGAACAATCATTGTATCAGTGTCCA < 41bp 1 0.0835190685286054 1 0.264894366264343 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110322 chr3:39110337 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_27232 0 0 0 1 2 Ribosome 1 0.500231507511579 1 0.999536984976842 hm5C_site_27703 DeepMRMD:1;iRNA_m5C:0.999536984976842 27704 chr3 39110337 39110337 1 + G T LUAD 39110326 + 39110306 39110346 41 ATGAATCAACTGGGAACAATCATTGTATCAGGGTCCACTGA ATGAATCAACTGGGAACAATCATTGTATCAGTGTCCACTGA < 41bp 1 0.325672653627291 1 0.245504081249237 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110326 chr3:39110337 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_27233 0 0 0 1 2 Ribosome 1 0.500231640291676 1 0.999536719416648 hm5C_site_27704 DeepMRMD:1;iRNA_m5C:0.999536719416648 27705 chr2 99999328 99999328 1 + G A LUAD 99999336 + 99999316 99999356 41 CCCCAGACAATTGAGTCTATCAACCTTCTCAAATCTAAAAA CCCCAGACAATTAAGTCTATCAACCTTCTCAAATCTAAAAA < 41bp 1 0.335344668581663 1 0.219954371452332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99999336 chr2:99999328 nonsynonymous SNV 0.997 3 13 hm5C_associated_SNPs_27234 0 0 1 0 2 Ribosome 1 0.500231630392566 1 0.999536739214868 hm5C_site_27705 DeepMRMD:1;iRNA_m5C:0.999536739214868 27706 chr1 193205393 193205393 1 + G T LUAD 193205390 + 193205370 193205410 41 ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGTG ACTTTTCTACTTGTAGGGACCGCTTTGTAGCCGTTTTTGTG < 41bp 1 0.314799565388555 1 0.0590779781341553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205390 chr1:193205393 nonsynonymous SNV 0.843 4 24 hm5C_associated_SNPs_27235 0 0 1 0 2 Ribosome 1 0.500231530154408 1 0.999536939691184 hm5C_site_27706 DeepMRMD:1;iRNA_m5C:0.999536939691184 27707 chr20 42695416 42695416 1 + C A LUAD 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTAACCTGGCCCATCCAA < 41bp 1 0.46539557467149 1 0.371286571025848 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695416 stopgain 0.911 0 26 hm5C_associated_SNPs_27236 0 0 1 0 2 exosome 1 0.500231501594173 1 0.999536996811654 hm5C_site_27707 DeepMRMD:1;iRNA_m5C:0.999536996811654 27708 chr5 71495211 71495211 1 + C A LUAD 71495192 + 71495172 71495212 41 GTGGCCACACACTTGGGGACCCCAGCTACTCTTATGAAACC GTGGCCACACACTTGGGGACCCCAGCTACTCTTATGAAAAC < 41bp 1 0.101547422711274 1 0.148515820503235 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71495192 chr5:71495211 nonsynonymous SNV 0.995 2 40 hm5C_associated_SNPs_27237 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27708 DeepMRMD:1;iRNA_m5C:0.999536712157815 27709 chr5 40979944 40979944 1 + C A LUAD 40979964 + 40979944 40979984 41 CAGCTGTACTCTGCCTGCCTCAGCTGAGAAAGCTTGTGGTG AAGCTGTACTCTGCCTGCCTCAGCTGAGAAAGCTTGTGGTG < 41bp 1 0.622175267886108 1 0.824876964092255 experiment 0.755649464227784 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control C7 ENSG00000112936 CDS Human protein_coding chr5:40979964 chr5:40979944 nonsynonymous SNV 0.784 0 1 hm5C_associated_SNPs_27238 0 0 0 0 0 Endoplasmic reticulum 1 0.500231745316958 0.35024607181549 0.999536509366084 hm5C_site_27709 DeepMRMD:0.35024607181549;iRNA_m5C:0.999536509366084 27710 chr20 37570740 37570740 1 + G T LUAD 37570736 + 37570716 37570756 41 TCTCAATTTCTGGATATGTGCATGGATCTGAAAGTTCATCC TCTCAATTTCTGGATATGTGCATGTATCTGAAAGTTCATCC < 41bp 1 0.269590560108597 1 0.0376361310482025 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570736 chr20:37570740 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_27239 0 0 1 0 1 Ribosome 1 0.500231643635076 1 0.999536712729849 hm5C_site_27710 DeepMRMD:1;iRNA_m5C:0.999536712729849 27711 chr1 39799732 39799732 1 + G C LUAD 39799715 + 39799695 39799735 41 ACAGTTGTGCAGTCCATTGACAGAGGTCTTTTGGAGAGAGA ACAGTTGTGCAGTCCATTGACAGAGGTCTTTTGGAGACAGA < 41bp 1 0.218556726758571 1 0.671160876750946 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MACF1 ENSG00000127603 CDS Human protein_coding chr1:39799715 chr1:39799732 nonsynonymous SNV 0.998 0 38 hm5C_associated_SNPs_27240 0 0 1 0 0 Endoplasmic reticulum 1 0.500231646410362 0.657678246498108 0.999536707179276 hm5C_site_27711 DeepMRMD:0.657678246498108;iRNA_m5C:0.999536707179276 27712 chr17 65822348 65822348 1 + G A LUAD 65822356 + 65822336 65822376 41 ATGGAAGAGGACGACGATGACTCCGATTATCCGGAGGAGAT ATGGAAGAGGACAACGATGACTCCGATTATCCGGAGGAGAT < 41bp 1 0.48897979745351 1 0.358384251594543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65822356 chr17:65822348 nonsynonymous SNV 0.994 0 13 hm5C_associated_SNPs_27241 0 0 1 0 0 Cytosol 1 0.500231642221186 1 0.999536715557627 hm5C_site_27712 DeepMRMD:1;iRNA_m5C:0.999536715557627 27713 chr17 65822348 65822348 1 + G A LUAD 65822358 + 65822338 65822378 41 GGAAGAGGACGACGATGACTCCGATTATCCGGAGGAGATGG GGAAGAGGACAACGATGACTCCGATTATCCGGAGGAGATGG < 41bp 1 0.165250717537835 1 0.102515816688538 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65822358 chr17:65822348 nonsynonymous SNV 0.994 0 11 hm5C_associated_SNPs_27242 0 0 1 0 0 Cytosol 1 0.500231643902353 1 0.999536712195295 hm5C_site_27713 DeepMRMD:1;iRNA_m5C:0.999536712195295 27714 chr3 45565506 45565506 1 + C T LUAD 45565503 + 45565483 45565523 41 CCTTAGCAAGCCTCTCAGAGCGTCATTCTCCACAGCCCCGA CCTTAGCAAGCCTCTCAGAGCGTTATTCTCCACAGCCCCGA < 41bp 1 0.331716461800918 1 0.0400277972221375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45565503 chr3:45565506 synonymous SNV . 0 24 hm5C_associated_SNPs_27244 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_27714 DeepMRMD:1;iRNA_m5C:0.999536712157815 27715 chr2 99156082 99156082 1 + C G LUAD 99156084 + 99156064 99156104 41 GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGCAGT GATGGCAGAGAGCGTGCTGTCCCTGCACGTGCCCCGGCAGT < 41bp 1 0.313205987302113 1 0.406590700149536 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99156084 chr2:99156082 synonymous SNV . 0 19 hm5C_associated_SNPs_27245 0 0 1 0 1 Ribosome 1 0.500231645646798 1 0.999536708706404 hm5C_site_27715 DeepMRMD:1;iRNA_m5C:0.999536708706404 27716 chr19 30936301 30936301 1 + G T LUAD 30936308 + 30936288 30936328 41 TTTTTGTCACACGGGCTGAACCAGACTCTCGAGTATAACCT TTTTTGTCACACGTGCTGAACCAGACTCTCGAGTATAACCT < 41bp 1 0.283233365964197 1 0.0335721671581268 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936308 chr19:30936301 nonsynonymous SNV 0.998 3 14 hm5C_associated_SNPs_27247 0 0 1 0 0 exosome 1 0.500231643207769 1 0.999536713584462 hm5C_site_27716 DeepMRMD:1;iRNA_m5C:0.999536713584462 27717 chr7 142459766 142459766 1 + C A LUAD 142459748 + 142459728 142459768 41 AAGACTCTGAACAATGACATCATGTTAATCAAGCTCTCCTC AAGACTCTGAACAATGACATCATGTTAATCAAGCTCTCATC < 41bp 1 0.520028827107002 1 0.0314818620681763 experiment 0.959942345785996 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459748 chr7:142459766 synonymous SNV . 0 39 hm5C_associated_SNPs_27248 0 0 0 0 0 Cytosol 1 0.500231150414253 1 0.999537699171495 hm5C_site_27717 DeepMRMD:1;iRNA_m5C:0.999537699171495 27718 chr7 142459766 142459766 1 + C A LUAD 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATGACATCATGTTAATCAAGCTCTCATCACGTGCAGT < 41bp 1 0.457249740118515 1 0.754085302352905 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459766 synonymous SNV . 0 30 hm5C_associated_SNPs_27249 0 0 0 0 0 Cytosol 1 0.500231773884491 0.49182939529419 0.999536452231018 hm5C_site_27718 DeepMRMD:0.49182939529419;iRNA_m5C:0.999536452231018 27719 chr7 142459766 142459766 1 + C A LUAD 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATGACATCATGTTAATCAAGCTCTCATCACGTGCAGTAATC < 41bp 1 0.191829351075721 1 0.0286819338798523 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459766 synonymous SNV . 0 26 hm5C_associated_SNPs_27250 0 0 0 0 0 Cytosol 1 0.500232132523946 1 0.999535734952109 hm5C_site_27719 DeepMRMD:1;iRNA_m5C:0.999535734952109 27720 chr7 142459766 142459766 1 + C A LUAD 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA GACATCATGTTAATCAAGCTCTCATCACGTGCAGTAATCAA < 41bp 1 0.357615475925541 1 0.0916732847690582 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459766 synonymous SNV . 0 24 hm5C_associated_SNPs_27251 0 0 0 0 0 Cytosol 1 0.500208544413564 1 0.999582911172871 hm5C_site_27720 DeepMRMD:1;iRNA_m5C:0.999582911172871 27721 chr7 142459766 142459766 1 + C A LUAD 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG CATCATGTTAATCAAGCTCTCATCACGTGCAGTAATCAACG < 41bp 1 0.568478732212761 1 0.287157505750656 experiment 0.863042535574478 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459766 synonymous SNV . 0 22 hm5C_associated_SNPs_27252 0 0 0 0 0 Cytosol 1 0.50023162850693 1 0.999536742986141 hm5C_site_27721 DeepMRMD:1;iRNA_m5C:0.999536742986141 27722 chr7 142459766 142459766 1 + C A LUAD 142459770 + 142459750 142459790 41 TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC TGTTAATCAAGCTCTCATCACGTGCAGTAATCAACGCCCGC < 41bp 1 0.402367973711507 1 0.251832008361816 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459770 chr7:142459766 synonymous SNV . 0 17 hm5C_associated_SNPs_27254 0 0 0 0 0 Cytosol 1 0.500231644566894 1 0.999536710866212 hm5C_site_27722 DeepMRMD:1;iRNA_m5C:0.999536710866212 27723 chr7 142459766 142459766 1 + C A LUAD 142459774 + 142459754 142459794 41 AATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCGTGT AATCAAGCTCTCATCACGTGCAGTAATCAACGCCCGCGTGT < 41bp 1 0.688355183351672 1 0.0815572440624237 experiment 0.623289633296657 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459774 chr7:142459766 synonymous SNV . 0 13 hm5C_associated_SNPs_27255 0 0 0 0 0 Cytosol 1 0.500231644127603 1 0.999536711744794 hm5C_site_27723 DeepMRMD:1;iRNA_m5C:0.999536711744794 27724 chr7 142459766 142459766 1 + C A LUAD 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCATCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC < 41bp 1 0.611127909182425 1 0.311046957969666 experiment 0.77774418163515 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459766 synonymous SNV . 0 3 hm5C_associated_SNPs_27257 0 0 0 0 0 Cytosol 1 0.500231644552328 1 0.999536710895343 hm5C_site_27724 DeepMRMD:1;iRNA_m5C:0.999536710895343 27725 chr7 142459766 142459766 1 + C A LUAD 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC ATCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC < 41bp 1 0.526986924457574 1 0.134393662214279 experiment 0.946026151084852 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459766 synonymous SNV . 0 1 hm5C_associated_SNPs_27258 0 0 0 0 0 Cytosol 1 0.500231649988106 1 0.999536700023788 hm5C_site_27725 DeepMRMD:1;iRNA_m5C:0.999536700023788 27726 chr19 18729267 18729267 1 + C T LUAD 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCTTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.226944376185457 1 0.154537200927734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729267 synonymous SNV . 0 4 hm5C_associated_SNPs_27259 0 0 1 0 2 Cytosol 1 0.500231825600361 1 0.999536348799278 hm5C_site_27726 DeepMRMD:1;iRNA_m5C:0.999536348799278 27727 chr5 72201204 72201204 1 + A G LUAD 72201196 + 72201176 72201216 41 GTTTCTCTGACCAGTTTCCTCTTCCCTTAAAAGAGCGTCTT GTTTCTCTGACCAGTTTCCTCTTCCCTTGAAAGAGCGTCTT < 41bp 1 0.209679838875174 1 0.30716672539711 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72201196 chr5:72201204 synonymous SNV . 0 29 hm5C_associated_SNPs_27260 0 0 1 0 1 Cytosol 1 0.500231643921084 1 0.999536712157831 hm5C_site_27727 DeepMRMD:1;iRNA_m5C:0.999536712157831 27728 chr17 41561531 41561531 1 + G T LUAD 41561537 + 41561517 41561557 41 CTGGACAATCACTTGGGGATCAACGACAAGGACCTTGGTGA CTGGACAATCACTTTGGGATCAACGACAAGGACCTTGGTGA < 41bp 1 0.524310974743461 1 0.226370811462402 experiment 0.951378050513078 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41561537 chr17:41561531 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_27261 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27728 DeepMRMD:1;iRNA_m5C:0.999536712157815 27729 chr16 57144694 57144694 1 + G T LUAD 57144680 + 57144660 57144700 41 CCACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCC CCACATACCCAGTGGGGGTGCCCCAGCAGCGGGGTCAGCCC < 41bp 1 0.613510352725948 1 0.226213991641998 experiment 0.772979294548104 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144680 chr16:57144694 nonsynonymous SNV 0.039 0 35 hm5C_associated_SNPs_27263 0 0 1 0 1 chromatin 1 0.500231643921088 1 0.999536712157824 hm5C_site_27729 DeepMRMD:1;iRNA_m5C:0.999536712157824 27730 chr16 57144694 57144694 1 + G T LUAD 57144681 + 57144661 57144701 41 CACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCC CACATACCCAGTGGGGGTGCCCCAGCAGCGGGGTCAGCCCC < 41bp 1 0.261950017108285 1 0.242058128118515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144681 chr16:57144694 nonsynonymous SNV 0.039 0 34 hm5C_associated_SNPs_27264 0 0 1 0 1 chromatin 1 0.500231643921017 1 0.999536712157965 hm5C_site_27730 DeepMRMD:1;iRNA_m5C:0.999536712157965 27731 chr16 57144694 57144694 1 + G T LUAD 57144682 + 57144662 57144702 41 ACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCCC ACATACCCAGTGGGGGTGCCCCAGCAGCGGGGTCAGCCCCC < 41bp 1 0.395835932078419 1 0.307772666215897 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144682 chr16:57144694 nonsynonymous SNV 0.039 0 33 hm5C_associated_SNPs_27265 0 0 1 0 1 chromatin 1 0.500231643903163 1 0.999536712193674 hm5C_site_27731 DeepMRMD:1;iRNA_m5C:0.999536712193674 27732 chr16 57144694 57144694 1 + G T LUAD 57144695 + 57144675 57144715 41 GGGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGT GGGTGCCCCAGCAGCGGGGTCAGCCCCCATGGGCCCCCAGT < 41bp 1 0.291493255979679 1 0.120512664318085 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144695 chr16:57144694 nonsynonymous SNV 0.039 0 20 hm5C_associated_SNPs_27266 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27732 DeepMRMD:1;iRNA_m5C:0.999536712157815 27733 chr16 57144694 57144694 1 + G T LUAD 57144698 + 57144678 57144718 41 TGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATT TGCCCCAGCAGCGGGGTCAGCCCCCATGGGCCCCCAGTATT < 41bp 1 0.243877921745363 1 0.215398162603378 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144698 chr16:57144694 nonsynonymous SNV 0.039 0 17 hm5C_associated_SNPs_27267 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27733 DeepMRMD:1;iRNA_m5C:0.999536712157815 27734 chr16 57144694 57144694 1 + G T LUAD 57144700 + 57144680 57144720 41 CCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGC CCCCAGCAGCGGGGTCAGCCCCCATGGGCCCCCAGTATTGC < 41bp 1 0.325308030303494 1 0.414365977048874 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144700 chr16:57144694 nonsynonymous SNV 0.039 0 15 hm5C_associated_SNPs_27269 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27734 DeepMRMD:1;iRNA_m5C:0.999536712157815 27735 chr16 57144694 57144694 1 + G T LUAD 57144701 + 57144681 57144721 41 CCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGCG CCCAGCAGCGGGGTCAGCCCCCATGGGCCCCCAGTATTGCG < 41bp 1 0.227536954302882 1 0.419857144355774 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144701 chr16:57144694 nonsynonymous SNV 0.039 0 14 hm5C_associated_SNPs_27270 0 0 1 0 1 chromatin 1 0.50023164269023 1 0.999536714619541 hm5C_site_27735 DeepMRMD:1;iRNA_m5C:0.999536714619541 27736 chr7 148921513 148921513 1 + C T LUAD 148921521 + 148921501 148921541 41 AGCGGCTGCACACGGGCGAGCGGCCTTTCCAATGTGCACTG AGCGGCTGCACATGGGCGAGCGGCCTTTCCAATGTGCACTG < 41bp 1 0.456393054736392 1 0.652655005455017 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921521 chr7:148921513 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_27271 0 0 1 0 0 Cytosol 1 0.500231550471262 0.694689989089966 0.999536899057475 hm5C_site_27736 DeepMRMD:0.694689989089966;iRNA_m5C:0.999536899057475 27737 chr17 3629172 3629172 1 + G A LUAD 3629168 + 3629148 3629188 41 AGGCATCACTGCGCTTTGAGCACCGAGACTTACACTGGGGG AGGCATCACTGCGCTTTGAGCACCAAGACTTACACTGGGGG < 41bp 1 0.599027209556053 1 0.583825469017029 experiment 0.801945580887893 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HASPIN ENSG00000177602 CDS Human protein_coding chr17:3629168 chr17:3629172 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_27272 0 0 1 0 0 unknown 1 0.500227677272559 0.832349061965942 0.999544645454881 hm5C_site_27737 DeepMRMD:0.832349061965942;iRNA_m5C:0.999544645454881 27738 chr19 33465037 33465037 1 + G C LUAD 33465022 + 33465002 33465042 41 ACCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT ACCCGGATGAGTGAACAATACTTCCCAGCCCTACACAAGTT < 41bp 1 0.177457048984596 1 0.125192821025848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465022 chr19:33465037 nonsynonymous SNV 0.990 3 36 hm5C_associated_SNPs_27274 0 0 0 0 2 cytosol 1 0.500231643921049 1 0.999536712157902 hm5C_site_27738 DeepMRMD:1;iRNA_m5C:0.999536712157902 27739 chr6 26156697 26156697 1 + T A LUAD 26156707 + 26156687 26156727 41 GGCCCGCAAGTCTGCAGGTGCGGCCAAGCGCAAAGCGTCTG GGCCCGCAAGACTGCAGGTGCGGCCAAGCGCAAAGCGTCTG < 41bp 1 0.577192868320026 1 0.115238726139069 experiment 0.845614263359948 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26156707 chr6:26156697 nonsynonymous SNV 0.837 0 11 hm5C_associated_SNPs_27275 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27739 DeepMRMD:1;iRNA_m5C:0.999536712157815 27740 chr1 150280578 150280578 1 + C G LUAD 150280582 + 150280562 150280602 41 AAAGCTATGAAAGGTGCCGGCGGATCTACAACATGGAAATG AAAGCTATGAAAGGTGGCGGCGGATCTACAACATGGAAATG < 41bp 1 0.423086682641558 1 0.358746081590652 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280582 chr1:150280578 nonsynonymous SNV 0.995 2 17 hm5C_associated_SNPs_27276 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27740 DeepMRMD:1;iRNA_m5C:0.999536712157815 27741 chr11 108004609 108004609 1 + G A LUAD 108004618 + 108004598 108004638 41 AGCCTTTCCTTGCTGCCAGCCACTAAGCTTGGTTCCATTGC AGCCTTTCCTTACTGCCAGCCACTAAGCTTGGTTCCATTGC < 41bp 1 0.477153572682737 1 0.114433526992798 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACAT1 ENSG00000075239 CDS Human protein_coding chr11:108004618 chr11:108004609 synonymous SNV . 0 12 hm5C_associated_SNPs_27277 0 0 1 0 2 Ribosome 1 0.500231659235992 1 0.999536681528017 hm5C_site_27741 DeepMRMD:1;iRNA_m5C:0.999536681528017 27742 chr19 52714679 52714679 1 + C T LUAD 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG CGCACCTTGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG < 41bp 1 0.457373443299215 1 0.0917878746986389 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714679 nonsynonymous SNV 0.996 4 8 hm5C_associated_SNPs_27278 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27742 DeepMRMD:1;iRNA_m5C:0.999536712157815 27743 chr6 43171614 43171614 1 + G A LUAD 43171598 + 43171578 43171618 41 CTGTTTGTTCCCAGACTGAACAGGGTTTTGCGCCACGAGCA CTGTTTGTTCCCAGACTGAACAGGGTTTTGCGCCACAAGCA < 41bp 1 0.639481297113255 1 0.776929140090942 experiment 0.72103740577349 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43171598 chr6:43171614 nonsynonymous SNV 0.923 4 37 hm5C_associated_SNPs_27280 0 0 0 0 1 chromatin 1 0.50023164392109 0.446141719818116 0.99953671215782 hm5C_site_27743 DeepMRMD:0.446141719818116;iRNA_m5C:0.99953671215782 27744 chr5 14291313 14291313 1 + G A LUAD 14291323 + 14291303 14291343 41 TCCAGCTGAGGCTGTTTGAACAGGATGCTGAGAAGGTAAAG TCCAGCTGAGACTGTTTGAACAGGATGCTGAGAAGGTAAAG < 41bp 1 0.50990279708756 1 0.436176300048828 experiment 0.980194405824879 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14291323 chr5:14291313 synonymous SNV . 0 11 hm5C_associated_SNPs_27281 0 0 1 0 1 Nucleus 1 0.500231633867456 1 0.999536732265089 hm5C_site_27744 DeepMRMD:1;iRNA_m5C:0.999536732265089 27745 chr3 47453061 47453061 1 + C T LUAD 47453044 + 47453024 47453064 41 GCCAGCTGCGTGGAGGGGCTCTCCCCATACTGCCCCCCGCT GCCAGCTGCGTGGAGGGGCTCTCCCCATACTGCCCCCTGCT < 41bp 1 0.337667790462296 1 0.114839047193527 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47453044 chr3:47453061 nonsynonymous SNV 0.988 4 38 hm5C_associated_SNPs_27282 0 0 1 0 0 chromatin 1 0.500231643921211 1 0.999536712157579 hm5C_site_27745 DeepMRMD:1;iRNA_m5C:0.999536712157579 27746 chr7 142460304 142460304 1 + G T LUAD 142460286 + 142460266 142460306 41 TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTG TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCATTG < 41bp 1 0.120770642473417 1 0.257851839065552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460286 chr7:142460304 nonsynonymous SNV 0.045 3 39 hm5C_associated_SNPs_27283 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27746 DeepMRMD:1;iRNA_m5C:0.999536712157815 27747 chr7 142460304 142460304 1 + G T LUAD 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGACTACCCAGACGAGCTGCATTGCCT < 41bp 1 0.115619473066781 1 0.287648111581802 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460304 nonsynonymous SNV 0.045 3 36 hm5C_associated_SNPs_27284 0 0 0 0 1 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_27747 DeepMRMD:1;iRNA_m5C:0.999536712157812 27748 chr7 142460304 142460304 1 + G T LUAD 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGACGAGCTGCATTGCCTG < 41bp 1 0.446684295336164 1 0.462962359189987 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460304 nonsynonymous SNV 0.045 3 35 hm5C_associated_SNPs_27285 0 0 0 0 1 Cytosol 1 0.500231288871411 1 0.999537422257179 hm5C_site_27748 DeepMRMD:1;iRNA_m5C:0.999537422257179 27749 chr7 142460304 142460304 1 + G T LUAD 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACGAGCTGCATTGCCTGG < 41bp 1 0.44933063287813 1 0.396477609872818 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460304 nonsynonymous SNV 0.045 3 34 hm5C_associated_SNPs_27286 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27749 DeepMRMD:1;iRNA_m5C:0.999536712157815 27750 chr7 142460304 142460304 1 + G T LUAD 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCATTGCCTGGATGC < 41bp 1 0.346306781142337 1 0.335082918405533 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460304 nonsynonymous SNV 0.045 3 30 hm5C_associated_SNPs_27287 0 0 0 0 1 Cytosol 1 0.500231643939767 1 0.999536712120466 hm5C_site_27750 DeepMRMD:1;iRNA_m5C:0.999536712120466 27751 chr7 142460304 142460304 1 + G T LUAD 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCATTGCCTGGATGCTCCT < 41bp 1 0.624890486331225 1 0.203671932220459 experiment 0.750219027337551 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460304 nonsynonymous SNV 0.045 3 26 hm5C_associated_SNPs_27288 0 0 0 0 1 Cytosol 1 0.500231643921067 1 0.999536712157866 hm5C_site_27751 DeepMRMD:1;iRNA_m5C:0.999536712157866 27752 chr7 142460304 142460304 1 + G T LUAD 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCATTGCCTGGATGCTCCTGTG < 41bp 1 0.0799058528411721 1 0.0304088294506073 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460304 nonsynonymous SNV 0.045 3 23 hm5C_associated_SNPs_27289 0 0 0 0 1 Cytosol 1 0.500229174157516 1 0.999541651684968 hm5C_site_27752 DeepMRMD:1;iRNA_m5C:0.999541651684968 27753 chr7 142460304 142460304 1 + G T LUAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCATTGCCTGGATGCTCCTGTGCTGAG < 41bp 1 0.29189642859434 1 0.209305047988892 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460304 nonsynonymous SNV 0.045 3 18 hm5C_associated_SNPs_27290 0 0 0 0 1 Cytosol 1 0.500231885405811 1 0.999536229188377 hm5C_site_27753 DeepMRMD:1;iRNA_m5C:0.999536229188377 27754 chr7 142460304 142460304 1 + G T LUAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCATTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.422517382567507 1 0.14084005355835 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460304 nonsynonymous SNV 0.045 3 10 hm5C_associated_SNPs_27291 0 0 0 0 1 Cytosol 1 0.500231643995745 1 0.999536712008511 hm5C_site_27754 DeepMRMD:1;iRNA_m5C:0.999536712008511 27755 chr7 142460304 142460304 1 + G T LUAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCATTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.19436171002941 1 0.145373106002808 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460304 nonsynonymous SNV 0.045 3 8 hm5C_associated_SNPs_27292 0 0 0 0 1 Cytosol 1 0.500231643921109 1 0.999536712157782 hm5C_site_27755 DeepMRMD:1;iRNA_m5C:0.999536712157782 27756 chr7 142460304 142460304 1 + G T LUAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCATTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.422616089178404 1 0.0921176373958588 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460304 nonsynonymous SNV 0.045 3 7 hm5C_associated_SNPs_27293 0 0 0 0 1 Cytosol 1 0.500231643560457 1 0.999536712879085 hm5C_site_27756 DeepMRMD:1;iRNA_m5C:0.999536712879085 27757 chr7 142460304 142460304 1 + G T LUAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA ATTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.498250921115815 1 0.0542798042297363 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460304 nonsynonymous SNV 0.045 3 2 hm5C_associated_SNPs_27294 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27757 DeepMRMD:1;iRNA_m5C:0.999536712157815 27758 chr1 978663 978663 1 + G C LUAD 978683 + 978663 978703 41 GCGACGTGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATG CCGACGTGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATG < 41bp 1 0.347066666964315 1 0.167671471834183 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:978683 chr1:978663 nonsynonymous SNV 0.050 4 1 hm5C_associated_SNPs_27295 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644919335 1 0.99953671016133 hm5C_site_27758 DeepMRMD:1;iRNA_m5C:0.99953671016133 27759 chr2 220355624 220355624 1 + A C LUAD 220355629 + 220355609 220355649 41 AGTGCCCAGCCCTACAACCCCCAGGCCCTTAGGCCCCTTGG AGTGCCCAGCCCTACCACCCCCAGGCCCTTAGGCCCCTTGG < 41bp 1 0.173697229462671 1 0.412674874067307 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355629 chr2:220355624 nonsynonymous SNV 0.996 3 16 hm5C_associated_SNPs_27296 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27759 DeepMRMD:1;iRNA_m5C:0.999536712157815 27760 chr2 220355624 220355624 1 + A C LUAD 220355636 + 220355616 220355656 41 AGCCCTACAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGC AGCCCTACCACCCCCAGGCCCTTAGGCCCCTTGGCCACCGC < 41bp 1 0.105372354980879 1 0.0644210278987885 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355636 chr2:220355624 nonsynonymous SNV 0.996 3 9 hm5C_associated_SNPs_27297 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27760 DeepMRMD:1;iRNA_m5C:0.999536712157815 27761 chr2 220355624 220355624 1 + A C LUAD 220355643 + 220355623 220355663 41 CAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGCACGGGCA CCACCCCCAGGCCCTTAGGCCCCTTGGCCACCGCACGGGCA < 41bp 1 0.0262092920865109 1 0.0546150207519531 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355643 chr2:220355624 nonsynonymous SNV 0.996 3 2 hm5C_associated_SNPs_27298 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_27761 DeepMRMD:1;iRNA_m5C:0.999536712157816 27762 chr1 78001629 78001629 1 + A T LUAD 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGTCAC < 41bp 1 0.383866870956103 1 0.510925948619843 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001629 nonsynonymous SNV 0.001 2 38 hm5C_associated_SNPs_27299 0 0 0 0 1 Nucleus 1 0.500231643921092 0.978148102760314 0.999536712157815 hm5C_site_27762 DeepMRMD:0.978148102760314;iRNA_m5C:0.999536712157815 27763 chr14 53175517 53175517 1 + G C LUAD 53175498 + 53175478 53175518 41 CTAGTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGT CTAGTCATTGTTAAAGCTACCAATGGACCAAGATATGTTCT < 41bp 1 0.18424390411271 1 0.66331672668457 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53175498 chr14:53175517 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_27300 0 0 1 0 2 Ribosome 1 0.500231643996193 0.67336654663086 0.999536712007614 hm5C_site_27763 DeepMRMD:0.67336654663086;iRNA_m5C:0.999536712007614 27764 chr22 18567976 18567976 1 + C T LUAD 18567978 + 18567958 18567998 41 CTGCCCTTCAAAAAGAGTCTCCTGGCTGCCTTGATCCTCTG CTGCCCTTCAAAAAGAGTTTCCTGGCTGCCTTGATCCTCTG < 41bp 1 0.187402541826571 1 0.0781746506690979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX26 ENSG00000215193 CDS Human protein_coding chr22:18567978 chr22:18567976 nonsynonymous SNV 0.964 1 19 hm5C_associated_SNPs_27301 0 0 1 0 2 Ribosome 1 0.500231643910363 1 0.999536712179275 hm5C_site_27764 DeepMRMD:1;iRNA_m5C:0.999536712179275 27765 chr1 161173236 161173236 1 + G T LUAD 161173246 + 161173226 161173266 41 GAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAG GAGGTGTTCGTCAGTGGCAGCCAGATGTGGAATGGGCACAG < 41bp 1 0.656486322691416 1 0.651928186416626 experiment 0.687027354617167 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161173246 chr1:161173236 synonymous SNV . 0 11 hm5C_associated_SNPs_27302 0 0 1 0 2 Ribosome 1 0.500231644115505 0.696143627166748 0.999536711768989 hm5C_site_27765 DeepMRMD:0.696143627166748;iRNA_m5C:0.999536711768989 27766 chrX 135106602 135106602 1 + G T LUAD 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTATTTTGTGGTGGCACCACTGCAATGCTGTCATGCTT < 41bp 1 0.281151367376171 1 0.574376046657562 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106602 nonsynonymous SNV 0.996 4 10 hm5C_associated_SNPs_27303 0 0 1 0 1 Endoplasmic reticulum 1 0.500231614553302 0.851247906684876 0.999536770893397 hm5C_site_27766 DeepMRMD:0.851247906684876;iRNA_m5C:0.999536770893397 27767 chr3 148871334 148871334 1 + A G LUAD 148871349 + 148871329 148871369 41 TTCATAGGCTTGAAAGCCATCTGTCACTTTAAAAACCACAT TTCATGGGCTTGAAAGCCATCTGTCACTTTAAAAACCACAT < 41bp 1 0.110575894061942 1 0.0864420533180237 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPS3 ENSG00000163755 CDS Human protein_coding chr3:148871349 chr3:148871334 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_27304 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_27767 DeepMRMD:1;iRNA_m5C:0.999536712157814 27768 chr12 73012765 73012765 1 + C A LUAD 73012771 + 73012751 73012791 41 CTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGAC CTGCCAGCCGAGCTATTTATCCTCTAGATAAATTACTGGAC < 41bp 1 0.101916069052111 1 0.289652347564697 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRHDE ENSG00000072657 CDS Human protein_coding chr12:73012771 chr12:73012765 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_27305 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27768 DeepMRMD:1;iRNA_m5C:0.999536712157815 27769 chr8 120431371 120431371 1 + C T LUAD 120431390 + 120431370 120431410 41 GCTTACAGGCCAGAAGCCACCCTAGGAGTAGAAGTCTCTGA GTTTACAGGCCAGAAGCCACCCTAGGAGTAGAAGTCTCTGA < 41bp 1 0.232240558929874 1 0.0776697397232056 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOV ENSG00000136999 CDS Human protein_coding chr8:120431390 chr8:120431371 nonsynonymous SNV 0.943 3 2 hm5C_associated_SNPs_27306 0 0 0 0 1 exosome 1 0.500231643911846 1 0.999536712176309 hm5C_site_27769 DeepMRMD:1;iRNA_m5C:0.999536712176309 27770 chr18 33780028 33780028 1 + A T LUAD 33780019 + 33779999 33780039 41 AGGTCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGG AGGTCAAGTCTGGGCGGTTGCACCCTGTGTGCACGCCTGGG < 41bp 1 0.635481689790788 1 0.0634149312973022 experiment 0.729036620418424 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780019 chr18:33780028 nonsynonymous SNV 0.000 1 30 hm5C_associated_SNPs_27307 0 0 1 0 0 Ribosome 1 0.500233667065533 1 0.999532665868935 hm5C_site_27770 DeepMRMD:1;iRNA_m5C:0.999532665868935 27771 chr18 33780028 33780028 1 + A T LUAD 33780021 + 33780001 33780041 41 GTCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAA GTCAAGTCTGGGCGGTTGCACCCTGTGTGCACGCCTGGGAA < 41bp 1 0.416185814763724 1 0.0514830648899078 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780021 chr18:33780028 nonsynonymous SNV 0.000 1 28 hm5C_associated_SNPs_27308 0 0 1 0 0 Ribosome 1 0.50023164392231 1 0.999536712155379 hm5C_site_27771 DeepMRMD:1;iRNA_m5C:0.999536712155379 27772 chr18 33780028 33780028 1 + A T LUAD 33780022 + 33780002 33780042 41 TCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAAG TCAAGTCTGGGCGGTTGCACCCTGTGTGCACGCCTGGGAAG < 41bp 1 0.463817965490558 1 0.317749470472336 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780022 chr18:33780028 nonsynonymous SNV 0.000 1 27 hm5C_associated_SNPs_27309 0 0 1 0 0 Ribosome 1 0.500231643882816 1 0.999536712234367 hm5C_site_27772 DeepMRMD:1;iRNA_m5C:0.999536712234367 27773 chr18 33780028 33780028 1 + A T LUAD 33780023 + 33780003 33780043 41 CAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAAGT CAAGTCTGGGCGGTTGCACCCTGTGTGCACGCCTGGGAAGT < 41bp 1 0.641415547726126 1 0.220759838819504 experiment 0.717168904547747 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780023 chr18:33780028 nonsynonymous SNV 0.000 1 26 hm5C_associated_SNPs_27310 0 0 1 0 0 Ribosome 1 0.500231643906636 1 0.999536712186727 hm5C_site_27773 DeepMRMD:1;iRNA_m5C:0.999536712186727 27774 chr2 71297697 71297697 1 + G A LUAD 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGAACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.55248064341579 1 0.422680795192719 experiment 0.895038713168421 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297697 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_27311 0 0 1 2 2 chromatin 1 0.500231645063836 1 0.999536709872328 hm5C_site_27774 DeepMRMD:1;iRNA_m5C:0.999536709872328 27775 chr17 38318122 38318122 1 + C T LUAD 38318128 + 38318108 38318148 41 GAAAAGCCTGACACCAAAAGCACTGTGACTGGAGAGAGGCA GAAAAGCCTGACACTAAAAGCACTGTGACTGGAGAGAGGCA < 41bp 1 0.275060115036902 1 0.153714418411255 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318128 chr17:38318122 synonymous SNV . 0 15 hm5C_associated_SNPs_27313 0 0 1 0 1 Ribosome 1 0.500231643993816 1 0.999536712012367 hm5C_site_27775 DeepMRMD:1;iRNA_m5C:0.999536712012367 27776 chr20 44522627 44522627 1 + G A LUAD 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGACTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.135321969716783 1 0.930726706981659 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522627 synonymous SNV . 0 5 hm5C_associated_SNPs_27314 0 0 1 1 2 Ribosome 1 0.500231612144307 0.138546586036682 0.999536775711387 hm5C_site_27776 DeepMRMD:0.138546586036682;iRNA_m5C:0.999536775711387 27777 chr7 142460320 142460320 1 + G T LUAD 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTTTG < 41bp 1 0.310843302017688 1 0.139179229736328 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460320 nonsynonymous SNV 0.001 1 39 hm5C_associated_SNPs_27315 0 0 0 0 2 Cytosol 1 0.500231660751805 1 0.99953667849639 hm5C_site_27777 DeepMRMD:1;iRNA_m5C:0.99953667849639 27778 chr7 142460320 142460320 1 + G T LUAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTTTGCTGAG < 41bp 1 0.223822083862115 1 0.0758628845214844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460320 nonsynonymous SNV 0.001 1 34 hm5C_associated_SNPs_27316 0 0 0 0 2 Cytosol 1 0.500231646989251 1 0.999536706021498 hm5C_site_27778 DeepMRMD:1;iRNA_m5C:0.999536706021498 27779 chr7 142460320 142460320 1 + G T LUAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTTTGCTGAGCCAGGCTA < 41bp 1 0.399791796953712 1 0.237693041563034 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460320 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_27317 0 0 0 0 2 Cytosol 1 0.50023164392114 1 0.999536712157721 hm5C_site_27779 DeepMRMD:1;iRNA_m5C:0.999536712157721 27780 chr7 142460320 142460320 1 + G T LUAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTTTGCTGAGCCAGGCTAAG < 41bp 1 0.0481588510012418 1 0.0460463166236877 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460320 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_27318 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_27780 DeepMRMD:1;iRNA_m5C:0.999536712157815 27781 chr7 142460320 142460320 1 + G T LUAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTTTGCTGAGCCAGGCTAAGT < 41bp 1 0.171009406256417 1 0.0714225769042969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460320 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_27319 0 0 0 0 2 Cytosol 1 0.500231644017102 1 0.999536711965795 hm5C_site_27781 DeepMRMD:1;iRNA_m5C:0.999536711965795 27782 chr7 142460320 142460320 1 + G T LUAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTTTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.595166710043215 1 0.166579276323318 experiment 0.809666579913569 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460320 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_27320 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27782 DeepMRMD:1;iRNA_m5C:0.999536712157815 27783 chr7 142460320 142460320 1 + G T LUAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTTTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.2996134304432 1 0.249823778867722 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460320 nonsynonymous SNV 0.001 1 13 hm5C_associated_SNPs_27321 0 0 0 0 2 Cytosol 1 0.500231651681046 1 0.999536696637908 hm5C_site_27783 DeepMRMD:1;iRNA_m5C:0.999536696637908 27784 chr7 142460320 142460320 1 + G T LUAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTTTGCTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.454231071259467 1 0.443793624639511 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460320 nonsynonymous SNV 0.001 1 12 hm5C_associated_SNPs_27322 0 0 0 0 2 Cytosol 1 0.500231618386169 1 0.999536763227662 hm5C_site_27784 DeepMRMD:1;iRNA_m5C:0.999536763227662 27785 chr7 142460320 142460320 1 + G T LUAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTTTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.357798966503175 1 0.100655794143677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460320 nonsynonymous SNV 0.001 1 8 hm5C_associated_SNPs_27323 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27785 DeepMRMD:1;iRNA_m5C:0.999536712157815 27786 chr8 145139400 145139400 1 + G T LUAD 145139396 + 145139376 145139416 41 CTCATGGTTCTGCGGCAGGCCTCCGGCCGCCCCCACGGCTC CTCATGGTTCTGCGGCAGGCCTCCTGCCGCCCCCACGGCTC < 41bp 1 0.610207418098002 1 0.747368216514587 experiment 0.779585163803997 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139396 chr8:145139400 nonsynonymous SNV 0.722 4 25 hm5C_associated_SNPs_27326 0 0 1 0 1 Endoplasmic reticulum 1 0.500232549453842 0.505263566970826 0.999534901092317 hm5C_site_27786 DeepMRMD:0.505263566970826;iRNA_m5C:0.999534901092317 27787 chr8 145139400 145139400 1 + G T LUAD 145139416 + 145139396 145139436 41 CTCCGGCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCT CTCCTGCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCT < 41bp 1 0.30490739885467 1 0.0367430448532104 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139416 chr8:145139400 nonsynonymous SNV 0.722 4 5 hm5C_associated_SNPs_27327 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_27787 DeepMRMD:1;iRNA_m5C:0.999536712157815 27788 chr8 145139400 145139400 1 + G T LUAD 145139418 + 145139398 145139438 41 CCGGCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCTAC CCTGCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCTAC < 41bp 1 0.593728800448716 1 0.055500328540802 experiment 0.812542399102568 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139418 chr8:145139400 nonsynonymous SNV 0.722 4 3 hm5C_associated_SNPs_27328 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921085 1 0.999536712157831 hm5C_site_27788 DeepMRMD:1;iRNA_m5C:0.999536712157831 27789 chr8 124787436 124787436 1 + G C LUAD 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAACTACAGCCGAGATCATCTCATGCT < 41bp 1 0.409890455837298 1 0.16869044303894 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787436 nonsynonymous SNV 0.987 1 18 hm5C_associated_SNPs_27329 0 0 1 0 1 Ribosome 1 0.500231626184361 1 0.999536747631279 hm5C_site_27789 DeepMRMD:1;iRNA_m5C:0.999536747631279 27790 chr16 83999018 83999018 1 + G T LUAD 83999000 + 83998980 83999020 41 GAGCTGTCTGCCCTGGAGGCCGCCACAAGGGTGGGTGCGGT GAGCTGTCTGCCCTGGAGGCCGCCACAAGGGTGGGTGCTGT < 41bp 1 0.592020402362534 1 0.795649528503418 experiment 0.815959195274931 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83999000 chr16:83999018 synonymous SNV . 0 39 hm5C_associated_SNPs_27330 0 0 1 0 0 chromatin 1 0.500231643921092 0.408700942993164 0.999536712157815 hm5C_site_27790 DeepMRMD:0.408700942993164;iRNA_m5C:0.999536712157815 27791 chr1 31898638 31898638 1 + G C LUAD 31898654 + 31898634 31898674 41 TTCGGCGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT TTCGCCGTCGTGGGCTCCTTCCTCTTCATCCTCATCCAGCT < 41bp 1 0.118052705218208 1 0.229969054460526 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31898654 chr1:31898638 nonsynonymous SNV 0.962 4 5 hm5C_associated_SNPs_27331 0 0 0 0 1 Endoplasmic reticulum 1 0.500111360663626 1 0.999777278672749 hm5C_site_27791 DeepMRMD:1;iRNA_m5C:0.999777278672749 27792 chr11 120769328 120769328 1 + C G LUAD 120769341 + 120769321 120769361 41 CACCACCCTGGTCGTCACCACCATCCTGGTAAGTGGGCTCT CACCACCGTGGTCGTCACCACCATCCTGGTAAGTGGGCTCT < 41bp 1 0.0232387798055986 1 0.0562650263309479 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120769341 chr11:120769328 nonsynonymous SNV 0.999 2 8 hm5C_associated_SNPs_27332 0 0 0 0 2 membrane 1 0.500231643921029 1 0.999536712157941 hm5C_site_27792 DeepMRMD:1;iRNA_m5C:0.999536712157941 27793 chr11 43908159 43908159 1 + A G LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGGGAGGGTGTGTATGAAAT < 41bp 1 0.694529853453876 1 0.669933140277863 experiment 0.610940293092249 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908159 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_27333 0 0 1 4 3 Ribosome 1 0.500231643921092 0.660133719444274 0.999536712157815 hm5C_site_27793 DeepMRMD:0.660133719444274;iRNA_m5C:0.999536712157815 27794 chr14 23794470 23794470 1 + C G LUAD 23794459 + 23794439 23794479 41 CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATG CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGGGACATCATG < 41bp 1 0.309726744763818 1 0.157879114151001 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794459 chr14:23794470 nonsynonymous SNV 0.999 1 32 hm5C_associated_SNPs_27334 0 0 1 0 1 unknown 1 0.5002316439211 1 0.9995367121578 hm5C_site_27794 DeepMRMD:1;iRNA_m5C:0.9995367121578 27795 chr14 23794470 23794470 1 + C G LUAD 23794460 + 23794440 23794480 41 TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATGG TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGGGACATCATGG < 41bp 1 0.422210565428114 1 0.489984780550003 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794460 chr14:23794470 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_27335 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_27795 DeepMRMD:1;iRNA_m5C:0.999536712157816 27796 chrX 73046055 73046055 1 + C A LUAD 73046036 - 73046016 73046056 41 TGTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAG TTTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAG < 41bp 1 0.107476451891578 1 0.181662529706955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046036 chrX:73046055 . . 0 2 hm5C_associated_SNPs_27336 0 0 1 4 0 unknown 1 0.500231643921066 1 0.999536712157868 hm5C_site_27796 DeepMRMD:1;iRNA_m5C:0.999536712157868 27797 chrX 73046055 73046055 1 + C A LUAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATTTGAAGA < 41bp 1 0.270808023535847 1 0.880592823028564 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046055 . . 0 35 hm5C_associated_SNPs_27337 0 0 1 4 0 unknown 1 0.500231644046729 0.238814353942872 0.999536711906543 hm5C_site_27797 DeepMRMD:0.238814353942872;iRNA_m5C:0.999536711906543 27798 chrX 73046055 73046055 1 + C A LUAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATT < 41bp 1 0.222305013256787 1 0.335459113121033 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046055 . . 0 41 hm5C_associated_SNPs_27338 0 0 1 4 0 unknown 1 0.500231643921097 1 0.999536712157806 hm5C_site_27798 DeepMRMD:1;iRNA_m5C:0.999536712157806 27799 chr17 77757912 77757912 1 + G T LUAD 77757931 + 77757911 77757951 41 CGGCCCCAGTGCCATGGCCACCCCAGAGAACCTGGCCAGCC CTGCCCCAGTGCCATGGCCACCCCAGAGAACCTGGCCAGCC < 41bp 1 0.547500553377448 1 0.128277629613876 experiment 0.904998893245103 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77757931 chr17:77757912 nonsynonymous SNV 0.001 2 2 hm5C_associated_SNPs_27339 0 0 0 0 0 chromatin 1 0.500214376171392 1 0.999571247657217 hm5C_site_27799 DeepMRMD:1;iRNA_m5C:0.999571247657217 27800 chr17 77757912 77757912 1 + G T LUAD 77757932 + 77757912 77757952 41 GGCCCCAGTGCCATGGCCACCCCAGAGAACCTGGCCAGCCT TGCCCCAGTGCCATGGCCACCCCAGAGAACCTGGCCAGCCT < 41bp 1 0.27800098243683 1 0.448360115289688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77757932 chr17:77757912 nonsynonymous SNV 0.001 2 1 hm5C_associated_SNPs_27340 0 0 0 0 0 chromatin 1 0.500231643920282 1 0.999536712159436 hm5C_site_27800 DeepMRMD:1;iRNA_m5C:0.999536712159436 27801 chr8 26227802 26227802 1 + A T LUAD 26227822 + 26227802 26227842 41 ATGAAATAAGTGTTGACAGCCTAGACTTCAATAAGAAAATC TTGAAATAAGTGTTGACAGCCTAGACTTCAATAAGAAAATC < 41bp 1 0.613519852456282 1 0.184426933526993 experiment 0.772960295087436 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26227822 chr8:26227802 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_27341 0 0 1 0 0 Cytosol 1 0.500231643921331 1 0.999536712157337 hm5C_site_27801 DeepMRMD:1;iRNA_m5C:0.999536712157337 27802 chr19 7620626 7620626 1 + C T LUAD 7620645 + 7620625 7620665 41 GCAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA GTAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA < 41bp 1 0.250562950458473 1 0.508771359920502 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620645 chr19:7620626 stopgain 0.998 0 2 hm5C_associated_SNPs_27342 0 0 1 0 1 Ribosome 1 0.500231746499136 0.982457280158996 0.999536507001728 hm5C_site_27802 DeepMRMD:0.982457280158996;iRNA_m5C:0.999536507001728 27803 chr19 7620626 7620626 1 + C T LUAD 7620646 + 7620626 7620666 41 CAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG TAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG < 41bp 1 0.471743793711504 1 0.728572368621826 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620646 chr19:7620626 stopgain 0.998 0 1 hm5C_associated_SNPs_27343 0 0 1 0 1 Ribosome 1 0.500231643921092 0.542855262756348 0.999536712157815 hm5C_site_27803 DeepMRMD:0.542855262756348;iRNA_m5C:0.999536712157815 27804 chr16 53319565 53319565 1 + G C LUAD 53319551 + 53319531 53319571 41 AACCAGACCACTCAGAAGTTCCTGCTGAGTGGTGGGATTTT AACCAGACCACTCAGAAGTTCCTGCTGAGTGGTGCGATTTT < 41bp 1 0.0414919344532761 1 0.0353025197982788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD9 ENSG00000177200 CDS Human protein_coding chr16:53319551 chr16:53319565 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_27344 0 0 1 0 2 Ribosome 1 0.500231484888695 1 0.999537030222611 hm5C_site_27804 DeepMRMD:1;iRNA_m5C:0.999537030222611 27805 chr3 48501867 48501867 1 + G A LUAD 48501851 + 48501831 48501871 41 GTAGAGACCAACCCTGAGGACTCAGTGTGCATCCTGGAAGG GTAGAGACCAACCCTGAGGACTCAGTGTGCATCCTGAAAGG < 41bp 1 0.377074628591299 1 0.32731556892395 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48501851 chr3:48501867 nonsynonymous SNV 0.528 4 37 hm5C_associated_SNPs_27345 0 0 1 0 0 chromatin 1 0.50023164388424 1 0.999536712231519 hm5C_site_27805 DeepMRMD:1;iRNA_m5C:0.999536712231519 27806 chr19 50302908 50302908 1 + G A LUAD 50302928 + 50302908 50302948 41 GGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCGG AGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCGG < 41bp 1 0.640239403173704 1 0.764561891555786 experiment 0.719521193652591 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302928 chr19:50302908 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_27346 0 0 1 0 1 Ribosome 1 0.500231643921092 0.470876216888428 0.999536712157815 hm5C_site_27806 DeepMRMD:0.470876216888428;iRNA_m5C:0.999536712157815 27807 chr6 31638977 31638977 1 + G T LUAD 31638959 + 31638939 31638979 41 TTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGAC TTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAATAC < 41bp 1 0.331401856549451 1 0.0359694957733154 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638959 chr6:31638977 nonsynonymous SNV 0.986 3 39 hm5C_associated_SNPs_27348 0 0 1 0 2 chromatin 1 0.500231643921087 1 0.999536712157827 hm5C_site_27807 DeepMRMD:1;iRNA_m5C:0.999536712157827 27808 chr6 31638977 31638977 1 + G T LUAD 31638961 + 31638941 31638981 41 CCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGACCC CCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAATACCC < 41bp 1 0.317463841456292 1 0.045625776052475 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638961 chr6:31638977 nonsynonymous SNV 0.986 3 37 hm5C_associated_SNPs_27349 0 0 1 0 2 chromatin 1 0.50023164392184 1 0.999536712156319 hm5C_site_27808 DeepMRMD:1;iRNA_m5C:0.999536712156319 27809 chr20 37570728 37570728 1 + G T LUAD 37570736 + 37570716 37570756 41 TCTCAATTTCTGGATATGTGCATGGATCTGAAAGTTCATCC TCTCAATTTCTGTATATGTGCATGGATCTGAAAGTTCATCC < 41bp 1 0.394545292868402 1 0.0706040263175964 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570736 chr20:37570728 nonsynonymous SNV 0.990 3 13 hm5C_associated_SNPs_27350 0 0 1 0 1 Ribosome 1 0.500231685630588 1 0.999536628738824 hm5C_site_27809 DeepMRMD:1;iRNA_m5C:0.999536628738824 27810 chr19 810798 810798 1 + G C LUAD 810787 + 810767 810807 41 AACCACGACCTCGGGGAGAACCACCACCTGCGGGTCTCCTT AACCACGACCTCGGGGAGAACCACCACCTGCCGGTCTCCTT < 41bp 1 0.14234477793473 1 0.204798072576523 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:810787 chr19:810798 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_27351 0 0 1 0 0 Cytosol 1 0.500231677464743 1 0.999536645070514 hm5C_site_27810 DeepMRMD:1;iRNA_m5C:0.999536645070514 27811 chr2 54872392 54872392 1 + G T LUAD 54872378 + 54872358 54872398 41 GCCCTCAGATGCTGGAGAATCAGATGGAAGTGCGGAAGAAG GCCCTCAGATGCTGGAGAATCAGATGGAAGTGCGTAAGAAG < 41bp 1 0.396202746252205 1 0.806172132492065 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872378 chr2:54872392 synonymous SNV . 0 35 hm5C_associated_SNPs_27352 0 0 1 0 1 Nucleus 1 0.500231643825196 0.38765573501587 0.999536712349609 hm5C_site_27811 DeepMRMD:0.38765573501587;iRNA_m5C:0.999536712349609 27812 chr12 104056673 104056673 1 + C A LUAD 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGACAAAAATGGCCGAATTTACACACTGACAGG < 41bp 1 0.191990634958474 1 0.291766375303268 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056673 nonsynonymous SNV 0.933 5 11 hm5C_associated_SNPs_27353 0 0 0 0 1 nucleoplasm 1 0.500231643921228 1 0.999536712157543 hm5C_site_27812 DeepMRMD:1;iRNA_m5C:0.999536712157543 27813 chr7 73927187 73927187 1 + G T LUAD 73927169 + 73927149 73927189 41 CCTTCCCACAGTGCTCAGCGCTGTCCAAACTGAACGCCGAG CCTTCCCACAGTGCTCAGCGCTGTCCAAACTGAACGCCTAG < 41bp 1 0.0907740890089883 1 0.401000171899796 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73927169 chr7:73927187 stopgain 0.924 1 39 hm5C_associated_SNPs_27354 0 0 1 0 1 Nucleus 1 0.500230813940988 1 0.999538372118025 hm5C_site_27813 DeepMRMD:1;iRNA_m5C:0.999538372118025 27814 chr7 130020972 130020972 1 + G A LUAD 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGAATCTCTGTAGCCGATGAAGCCCAGGTACAGA < 41bp 1 0.273503424125749 1 0.134852468967438 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020972 synonymous SNV . 0 28 hm5C_associated_SNPs_27356 0 0 0 0 2 Endoplasmic reticulum 1 0.500231640018185 1 0.999536719963631 hm5C_site_27814 DeepMRMD:1;iRNA_m5C:0.999536719963631 27815 chr6 42974779 42974779 1 + G C LUAD 42974762 + 42974742 42974782 41 TCAAATTCAAGGAGGTGAAGCGGGCAGGACTCAACGAGATG TCAAATTCAAGGAGGTGAAGCGGGCAGGACTCAACGACATG < 41bp 1 0.579163011089812 1 0.477130681276321 experiment 0.841673977820376 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974762 chr6:42974779 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_27357 0 0 1 0 1 Ribosome 1 0.500231632007804 1 0.999536735984393 hm5C_site_27815 DeepMRMD:1;iRNA_m5C:0.999536735984393 27816 chr6 42974779 42974779 1 + G C LUAD 42974771 + 42974751 42974791 41 AGGAGGTGAAGCGGGCAGGACTCAACGAGATGGTGGAGTAC AGGAGGTGAAGCGGGCAGGACTCAACGACATGGTGGAGTAC < 41bp 1 0.614294728130752 1 0.860748767852783 experiment 0.771410543738496 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974771 chr6:42974779 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_27358 0 0 1 0 1 Ribosome 1 0.500231644940297 0.278502464294434 0.999536710119406 hm5C_site_27816 DeepMRMD:0.278502464294434;iRNA_m5C:0.999536710119406 27817 chr7 142459867 142459867 1 + C A LUAD 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTCTGGCTGGGGCAACACTGAGAGCTCTGGCGGTGA < 41bp 1 0.387352437558519 1 0.152378231287003 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459867 nonsynonymous SNV 0.023 1 26 hm5C_associated_SNPs_27361 0 0 0 0 1 Cytosol 1 0.500231643933586 1 0.999536712132828 hm5C_site_27817 DeepMRMD:1;iRNA_m5C:0.999536712132828 27818 chr7 142459867 142459867 1 + C A LUAD 142459864 + 142459844 142459884 41 CATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT CATCTCTGGCTGGGGCAACACTGAGAGCTCTGGCGGTGAGT < 41bp 1 0.673198920751905 1 0.394204020500183 experiment 0.65360215849619 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459864 chr7:142459867 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_27362 0 0 0 0 1 Cytosol 1 0.500231643921128 1 0.999536712157744 hm5C_site_27818 DeepMRMD:1;iRNA_m5C:0.999536712157744 27819 chr7 142459867 142459867 1 + C A LUAD 142459871 + 142459851 142459891 41 GGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC GGCTGGGGCAACACTGAGAGCTCTGGCGGTGAGTGGGACCC < 41bp 1 0.436043129644456 1 0.297114849090576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459871 chr7:142459867 nonsynonymous SNV 0.023 1 17 hm5C_associated_SNPs_27363 0 0 0 0 1 Cytosol 1 0.5002316439202 1 0.9995367121596 hm5C_site_27819 DeepMRMD:1;iRNA_m5C:0.9995367121596 27820 chr7 142459867 142459867 1 + C A LUAD 142459873 + 142459853 142459893 41 CTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTT CTGGGGCAACACTGAGAGCTCTGGCGGTGAGTGGGACCCTT < 41bp 1 0.642332958544902 1 0.412419825792313 experiment 0.715334082910197 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459873 chr7:142459867 nonsynonymous SNV 0.023 1 15 hm5C_associated_SNPs_27364 0 0 0 0 1 Cytosol 1 0.50023164392245 1 0.9995367121551 hm5C_site_27820 DeepMRMD:1;iRNA_m5C:0.9995367121551 27821 chr7 142459867 142459867 1 + C A LUAD 142459877 + 142459857 142459897 41 GGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC GGCAACACTGAGAGCTCTGGCGGTGAGTGGGACCCTTAGTC < 41bp 1 0.488844599728102 1 0.859154462814331 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459877 chr7:142459867 nonsynonymous SNV 0.023 1 11 hm5C_associated_SNPs_27365 0 0 0 0 1 Cytosol 1 0.50023164832963 0.281691074371338 0.99953670334074 hm5C_site_27821 DeepMRMD:0.281691074371338;iRNA_m5C:0.99953670334074 27822 chr20 47895497 47895497 1 + C T LUAD 47895499 + 47895479 47895519 41 TGGTGTAAATGATGACTTCACTTTTTTCCCCATCAGATCGA TGGTGTAAATGATGACTTTACTTTTTTCCCCATCAGATCGA < 41bp 1 0.107032178726588 1 0.0471195578575134 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895499 chr20:47895497 . . 0 19 hm5C_associated_SNPs_27369 0 0 1 1 0 unknown 1 0.500231644368041 1 0.999536711263918 hm5C_site_27822 DeepMRMD:1;iRNA_m5C:0.999536711263918 27823 chr20 47895497 47895497 1 + C T LUAD 47895509 + 47895489 47895529 41 GATGACTTCACTTTTTTCCCCATCAGATCGACAATGCTGAC GATGACTTTACTTTTTTCCCCATCAGATCGACAATGCTGAC < 41bp 1 0.304282354602495 1 0.0718928575515747 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895509 chr20:47895497 . . 0 9 hm5C_associated_SNPs_27370 0 0 1 1 0 unknown 1 0.500231643880298 1 0.999536712239405 hm5C_site_27823 DeepMRMD:1;iRNA_m5C:0.999536712239405 27824 chr20 44037105 44037105 1 + G A LUAD 44037094 + 44037074 44037114 41 TACTTGTTTTGCTCCTCTACCCGCAGGAGCTGACATGGACC TACTTGTTTTGCTCCTCTACCCGCAGGAGCTAACATGGACC < 41bp 1 0.4375897162969 1 0.363094687461853 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DBNDD2 ENSG00000244274;ENSG00000254806 CDS Human other chr20:44037094 chr20:44037105 nonsynonymous SNV 0.963 1 32 hm5C_associated_SNPs_27371 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643923355 1 0.999536712153289 hm5C_site_27824 DeepMRMD:1;iRNA_m5C:0.999536712153289 27825 chr14 21544746 21544746 1 + C G LUAD 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCCTCCCCTTGTTGAGCGGCTGCTGATTCTCATTCATGAT < 41bp 1 0.142826088579395 1 0.124041885137558 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544746 nonsynonymous SNV 0.778 1 15 hm5C_associated_SNPs_27372 0 0 1 0 3 Cytosol 1 0.500231643620139 1 0.999536712759722 hm5C_site_27825 DeepMRMD:1;iRNA_m5C:0.999536712759722 27826 chr1 228401927 228401927 1 + G T LUAD 228401926 + 228401906 228401946 41 GGCGGTGCGCGTGGGCGACACGGCTATGTTTTGCGTGGAGC GGCGGTGCGCGTGGGCGACACTGCTATGTTTTGCGTGGAGC < 41bp 1 0.169659949572513 1 0.497144281864166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228401926 chr1:228401927 synonymous SNV . 0 22 hm5C_associated_SNPs_27374 0 0 0 0 1 Ribosome 1 0.500231643924082 1 0.999536712151835 hm5C_site_27826 DeepMRMD:1;iRNA_m5C:0.999536712151835 27827 chr3 37583973 37583973 1 + G T LUAD 37583980 + 37583960 37584000 41 GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGAGAGAC GGCCAGATGCCCATGGTCTACTTTGTGCTGCTGGGAGAGAC < 41bp 1 0.257273300663838 1 0.0434771776199341 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37583980 chr3:37583973 nonsynonymous SNV 0.951 4 14 hm5C_associated_SNPs_27375 0 0 0 0 1 Nucleus 1 0.500231643919619 1 0.999536712160763 hm5C_site_27827 DeepMRMD:1;iRNA_m5C:0.999536712160763 27828 chr16 82891972 82891972 1 + G T LUAD 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGTGCTTCTGCTAACATCTGCAGAAGATTTGGACTGCA < 41bp 1 0.554831643747897 1 0.790801107883453 experiment 0.890336712504206 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891972 synonymous SNV . 0 10 hm5C_associated_SNPs_27376 0 0 0 0 1 Nucleus 1 0.500174365914361 0.418397784233094 0.999651268171279 hm5C_site_27828 DeepMRMD:0.418397784233094;iRNA_m5C:0.999651268171279 27829 chr9 123898152 123898152 1 + G T LUAD 123898159 + 123898139 123898179 41 TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAAGCTGAG TGCAGCAGACCCATGGAGATCTCAGTGCCTATGAAGCTGAG < 41bp 1 0.603575032374987 1 0.434450149536133 experiment 0.792849935250027 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898159 chr9:123898152 nonsynonymous SNV 0.996 0 14 hm5C_associated_SNPs_27377 0 0 1 0 1 chromatin 1 0.500231643920502 1 0.999536712158996 hm5C_site_27829 DeepMRMD:1;iRNA_m5C:0.999536712158996 27830 chr9 123898153 123898153 1 + G T LUAD 123898159 + 123898139 123898179 41 TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAAGCTGAG TGCAGCAGACCCAGTGAGATCTCAGTGCCTATGAAGCTGAG < 41bp 1 0.635899128387478 1 0.433518886566162 experiment 0.728201743225045 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898159 chr9:123898153 stopgain 0.998 0 15 hm5C_associated_SNPs_27379 0 0 1 0 1 chromatin 1 0.500231643927358 1 0.999536712145283 hm5C_site_27830 DeepMRMD:1;iRNA_m5C:0.999536712145283 27831 chr10 103310561 103310561 1 + G T LUAD 103310555 + 103310535 103310575 41 TCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACCC TCTGGGACTTCCTAAATGATCCAGCTTCCCAAGCTGAACCC < 41bp 1 0.400451766827533 1 0.295627981424332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103310555 chr10:103310561 nonsynonymous SNV 0.992 1 27 hm5C_associated_SNPs_27380 0 0 0 0 1 chromatin 1 0.500231715100347 1 0.999536569799305 hm5C_site_27831 DeepMRMD:1;iRNA_m5C:0.999536569799305 27832 chr9 135942481 135942481 1 + G C LUAD 135942479 + 135942459 135942499 41 TTGGTTCTGCCCCCAGGTGGCTGAGAAGGTGGGTTGCCCTG TTGGTTCTGCCCCCAGGTGGCTCAGAAGGTGGGTTGCCCTG < 41bp 1 0.459873487190926 1 0.147570073604584 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942479 chr9:135942481 nonsynonymous SNV 0.410 0 23 hm5C_associated_SNPs_27381 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_27832 DeepMRMD:1;iRNA_m5C:0.999536712157815 27833 chr9 135942481 135942481 1 + G C LUAD 135942495 + 135942475 135942515 41 GTGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAG GTGGCTCAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAG < 41bp 1 0.267453583530417 1 0.0530041754245758 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942495 chr9:135942481 nonsynonymous SNV 0.410 0 7 hm5C_associated_SNPs_27382 0 0 0 0 1 exosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_27833 DeepMRMD:1;iRNA_m5C:0.99953671215782 27834 chr9 135942481 135942481 1 + G C LUAD 135942496 + 135942476 135942516 41 TGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGG TGGCTCAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGG < 41bp 1 0.200830428881808 1 0.0774108171463013 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942496 chr9:135942481 nonsynonymous SNV 0.410 0 6 hm5C_associated_SNPs_27383 0 0 0 0 1 exosome 1 0.50023164395211 1 0.999536712095781 hm5C_site_27834 DeepMRMD:1;iRNA_m5C:0.999536712095781 27835 chr9 135942481 135942481 1 + G C LUAD 135942497 + 135942477 135942517 41 GGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA GGCTCAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA < 41bp 1 0.522309077499859 1 0.620976507663727 experiment 0.955381845000283 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942497 chr9:135942481 nonsynonymous SNV 0.410 0 5 hm5C_associated_SNPs_27384 0 0 0 0 1 exosome 1 0.500231643921095 0.758046984672546 0.999536712157809 hm5C_site_27835 DeepMRMD:0.758046984672546;iRNA_m5C:0.999536712157809 27836 chr17 21731312 21731312 1 + C A LUAD 21731317 + 21731297 21731337 41 GCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGAGGTACTCTTTCTGACTACAACATCC < 41bp 1 0.163086713491634 1 0.150093644857407 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731317 chr17:21731312 nonsynonymous SNV 0.971 0 16 hm5C_associated_SNPs_27385 0 0 1 0 0 Ribosome 1 0.500231643918586 1 0.999536712162827 hm5C_site_27836 DeepMRMD:1;iRNA_m5C:0.999536712162827 27837 chr17 16285380 16285380 1 + C A LUAD 16285385 + 16285365 16285405 41 GCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGACGTACTCTTTCTGACTACAACATCC < 41bp 1 0.282670124821994 1 0.153589814901352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBB ENSG00000170315 CDS Human protein_coding chr17:16285385 chr17:16285380 synonymous SNV . 0 16 hm5C_associated_SNPs_27386 0 0 1 0 1 Ribosome 1 0.50023164393298 1 0.99953671213404 hm5C_site_27837 DeepMRMD:1;iRNA_m5C:0.99953671213404 27838 chr6 42974756 42974756 1 + G T LUAD 42974762 + 42974742 42974782 41 TCAAATTCAAGGAGGTGAAGCGGGCAGGACTCAACGAGATG TCAAATTCAAGGAGTTGAAGCGGGCAGGACTCAACGAGATG < 41bp 1 0.574680605975937 1 0.572171926498413 experiment 0.850638788048127 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974762 chr6:42974756 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_27388 0 0 1 0 2 Ribosome 1 0.50023164392075 0.855656147003174 0.9995367121585 hm5C_site_27838 DeepMRMD:0.855656147003174;iRNA_m5C:0.9995367121585 27839 chr6 42974756 42974756 1 + G T LUAD 42974771 + 42974751 42974791 41 AGGAGGTGAAGCGGGCAGGACTCAACGAGATGGTGGAGTAC AGGAGTTGAAGCGGGCAGGACTCAACGAGATGGTGGAGTAC < 41bp 1 0.617967592668044 1 0.900013148784637 experiment 0.764064814663912 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974771 chr6:42974756 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_27389 0 0 1 0 2 Ribosome 1 0.500231640249466 0.199973702430726 0.999536719501067 hm5C_site_27839 DeepMRMD:0.199973702430726;iRNA_m5C:0.999536719501067 27840 chr19 36580087 36580087 1 + G T LUAD 36580091 + 36580071 36580111 41 CTGCCGGCCCTGCCAGGGTTCGGATGGACTACACTTTGTCC CTGCCGGCCCTGCCAGTGTTCGGATGGACTACACTTTGTCC < 41bp 1 0.426678602293618 1 0.89959716796875 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36580091 chr19:36580087 nonsynonymous SNV 0.305 1 17 hm5C_associated_SNPs_27390 0 0 1 0 1 Nucleus 1 0.500231643920737 0.2008056640625 0.999536712158526 hm5C_site_27840 DeepMRMD:0.2008056640625;iRNA_m5C:0.999536712158526 27841 chr2 211502540 211502540 1 + G T LUAD 211502553 + 211502533 211502573 41 GGTTAAAGAAAAACATCCACCCTTGGGTTAAACAGGTAAAG GGTTAAATAAAAACATCCACCCTTGGGTTAAACAGGTAAAG < 41bp 1 0.0451822621683265 1 0.23865133523941 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211502553 chr2:211502540 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_27391 0 0 0 0 1 Nucleus 1 0.500231623992606 1 0.999536752014789 hm5C_site_27841 DeepMRMD:1;iRNA_m5C:0.999536752014789 27842 chr2 7154643 7154643 1 + G C LUAD 7154652 + 7154632 7154672 41 TGCAATTAGCTGCCCAGATGCTGCCTGCCCTAAACAGGGCC TGCAATTAGCTCCCCAGATGCTGCCTGCCCTAAACAGGGCC < 41bp 1 0.375255113672825 1 0.651285946369171 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF144A ENSG00000151692 CDS Human protein_coding chr2:7154652 chr2:7154643 nonsynonymous SNV 0.996 3 12 hm5C_associated_SNPs_27392 0 0 0 0 1 Nucleus 1 0.500231643921093 0.697428107261658 0.999536712157814 hm5C_site_27842 DeepMRMD:0.697428107261658;iRNA_m5C:0.999536712157814 27843 chrX 55033565 55033565 1 + G C LUAD 55033545 + 55033525 55033565 41 AAGCCTCTCCTGACATAGAGCTGCCTAGCCTACCACTGATG AAGCCTCTCCTGACATAGAGCTGCCTAGCCTACCACTGATC < 41bp 1 0.287508472111828 1 0.0918411612510681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APEX2 ENSG00000169188 CDS Human protein_coding chrX:55033545 chrX:55033565 nonsynonymous SNV 0.008 0 41 hm5C_associated_SNPs_27393 0 0 1 0 0 Ribosome 1 0.500231643917239 1 0.999536712165523 hm5C_site_27843 DeepMRMD:1;iRNA_m5C:0.999536712165523 27844 chr3 183882070 183882070 1 + G T LUAD 183882074 + 183882054 183882094 41 GCTGGTGTCAGCTGAGGGCTCACACCCAGACCCAGCCCCCT GCTGGTGTCAGCTGAGTGCTCACACCCAGACCCAGCCCCCT < 41bp 1 0.319557217746359 1 0.16473326086998 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882074 chr3:183882070 nonsynonymous SNV 0.996 4 17 hm5C_associated_SNPs_27394 0 0 1 0 1 Cytosol 1 0.500231472279951 1 0.999537055440098 hm5C_site_27844 DeepMRMD:1;iRNA_m5C:0.999537055440098 27845 chr10 134016256 134016256 1 + C A LUAD 134016266 + 134016246 134016286 41 TTTGTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC TTTGTCACCCAGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC < 41bp 1 0.216491130139257 1 0.287696748971939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016266 chr10:134016256 nonsynonymous SNV 0.026 0 11 hm5C_associated_SNPs_27395 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_27845 DeepMRMD:1;iRNA_m5C:0.999536712157815 27846 chr6 160212138 160212138 1 + C T LUAD 160212137 + 160212117 160212157 41 GGGCTGGCGGACGGTGTTTCCCTCCCGTGAGTTCTGGCACA GGGCTGGCGGACGGTGTTTCCTTCCCGTGAGTTCTGGCACA < 41bp 1 0.467484173376165 1 0.0920713543891907 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160212137 chr6:160212138 synonymous SNV . 0 22 hm5C_associated_SNPs_27396 0 0 1 0 1 Cytosol 1 0.500231643921504 1 0.999536712156993 hm5C_site_27846 DeepMRMD:1;iRNA_m5C:0.999536712156993 27847 chr7 128477712 128477712 1 + C A LUAD 128477710 + 128477690 128477730 41 GGCATCGAGCCACAGGGCAACACCGTGCTGCAGCCTGCCCA GGCATCGAGCCACAGGGCAACAACGTGCTGCAGCCTGCCCA < 41bp 1 0.350367381780871 1 0.277466326951981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128477710 chr7:128477712 nonsynonymous SNV 0.737 2 23 hm5C_associated_SNPs_27397 0 0 0 0 2 chromatin 1 0.50023164788344 1 0.999536704233119 hm5C_site_27847 DeepMRMD:1;iRNA_m5C:0.999536704233119 27848 chrX 53114910 53114910 1 + A T LUAD 53114930 + 53114910 53114950 41 ACAATTCATGACATCAAGATCTCTGACTTCATGGAGACCAC TCAATTCATGACATCAAGATCTCTGACTTCATGGAGACCAC < 41bp 1 0.406762122655051 1 0.244189888238907 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53114930 chrX:53114910 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_27398 0 0 1 1 1 chromatin 1 0.500231432426381 1 0.999537135147237 hm5C_site_27848 DeepMRMD:1;iRNA_m5C:0.999537135147237 27849 chr14 52169297 52169297 1 + G C LUAD 52169280 + 52169260 52169300 41 ATCCACTTCCGTGTGCAGTACTATGTGGAAAATGGCAGATT ATCCACTTCCGTGTGCAGTACTATGTGGAAAATGGCACATT < 41bp 1 0.221891423260036 1 0.0922210812568665 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52169280 chr14:52169297 nonsynonymous SNV 0.821 1 38 hm5C_associated_SNPs_27399 0 0 0 0 1 nucleus 1 0.500231643928703 1 0.999536712142594 hm5C_site_27849 DeepMRMD:1;iRNA_m5C:0.999536712142594 27850 chr2 32768471 32768471 1 + C G LUAD 32768463 + 32768443 32768483 41 ATCAAGTCAGCAGTACAGACCATGTCTCCCATACCTGCCCA ATCAAGTCAGCAGTACAGACCATGTCTCGCATACCTGCCCA < 41bp 1 0.103461146293897 1 0.0703944563865662 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32768463 chr2:32768471 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_27401 0 0 1 0 0 Nucleus 1 0.500228500029573 1 0.999542999940853 hm5C_site_27850 DeepMRMD:1;iRNA_m5C:0.999542999940853 27851 chr2 173451116 173451116 1 + G A LUAD 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTAGT < 41bp 1 0.342797825213908 1 0.421351075172424 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451116 synonymous SNV . 0 39 hm5C_associated_SNPs_27402 0 0 1 0 1 Ribosome 1 0.500231644022448 1 0.999536711955104 hm5C_site_27851 DeepMRMD:1;iRNA_m5C:0.999536711955104 27852 chr10 43292409 43292409 1 + G T LUAD 43292423 + 43292403 43292443 41 AAAGCAGCTCTCCCCACTTTCGATTCTGGGCATTGCACAGC AAAGCATCTCTCCCCACTTTCGATTCTGGGCATTGCACAGC < 41bp 1 0.202718945151116 1 0.140712052583694 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292423 chr10:43292409 nonsynonymous SNV 0.007 0 7 hm5C_associated_SNPs_27403 0 0 1 0 0 chromatin 1 0.500231643921124 1 0.999536712157751 hm5C_site_27852 DeepMRMD:1;iRNA_m5C:0.999536712157751 27853 chr1 109643075 109643075 1 + G T LUAD 109643068 + 109643048 109643088 41 AGCTCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG AGCTCTCCTCCTGCGAAGCCCCCTCGGTGCGCTGTGCAGCG < 41bp 1 0.128318509569673 1 0.15941309928894 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643068 chr1:109643075 . . 0 28 hm5C_associated_SNPs_27404 0 0 1 0 0 unknown 1 0.500231686705065 1 0.999536626589871 hm5C_site_27853 DeepMRMD:1;iRNA_m5C:0.999536626589871 27854 chr1 109643075 109643075 1 + G T LUAD 109643072 + 109643052 109643092 41 CTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCGAGGC CTCCTCCTGCGAAGCCCCCTCGGTGCGCTGTGCAGCGAGGC < 41bp 1 0.635345220329717 1 0.850648760795593 experiment 0.729309559340566 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643072 chr1:109643075 . . 0 24 hm5C_associated_SNPs_27405 0 0 1 0 0 unknown 1 0.50023164386671 0.298702478408814 0.999536712266579 hm5C_site_27854 DeepMRMD:0.298702478408814;iRNA_m5C:0.999536712266579 27855 chr1 109643075 109643075 1 + G T LUAD 109643093 + 109643073 109643113 41 GGGGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCT GGTGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCT < 41bp 1 0.182814339678646 1 0.0481016337871552 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643093 chr1:109643075 . . 0 3 hm5C_associated_SNPs_27408 0 0 1 0 0 unknown 1 0.500231231934734 1 0.999537536130532 hm5C_site_27855 DeepMRMD:1;iRNA_m5C:0.999537536130532 27856 chr1 109643075 109643075 1 + G T LUAD 109643095 + 109643075 109643115 41 GGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCTGT TGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCTGT < 41bp 1 0.666668455359099 1 0.13563072681427 experiment 0.666663089281802 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643095 chr1:109643075 . . 0 1 hm5C_associated_SNPs_27409 0 0 1 0 0 unknown 1 0.500228729876542 1 0.999542540246916 hm5C_site_27856 DeepMRMD:1;iRNA_m5C:0.999542540246916 27857 chr20 30738501 30738501 1 + C G LUAD 30738486 + 30738466 30738506 41 GCTCTCATGACCACAGCCTGCTTCCTCTTCATGTTCATGGG GCTCTCATGACCACAGCCTGCTTCCTCTTCATGTTGATGGG < 41bp 1 0.145410020377278 1 0.0314746797084808 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30738486 chr20:30738501 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_27410 0 0 1 0 2 Nucleus 1 0.50023164339306 1 0.99953671321388 hm5C_site_27857 DeepMRMD:1;iRNA_m5C:0.99953671321388 27858 chr1 117626662 117626662 1 + T C LUAD 117626677 + 117626657 117626697 41 TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA TCCCACGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA < 41bp 1 0.135704361995944 1 0.123739808797836 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117626677 chr1:117626662 synonymous SNV . 0 6 hm5C_associated_SNPs_27411 0 0 1 0 1 Nucleus 1 0.500231486719592 1 0.999537026560815 hm5C_site_27858 DeepMRMD:1;iRNA_m5C:0.999537026560815 27859 chr7 16823093 16823093 1 + G A LUAD 16823094 + 16823074 16823114 41 GAACCAGAAAGACCCCCGCGCGAATCCTAGTGCATTCCTTT GAACCAGAAAGACCCCCGCACGAATCCTAGTGCATTCCTTT < 41bp 1 0.197900547599755 1 0.107584118843079 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16823094 chr7:16823093 nonsynonymous SNV 0.905 2 20 hm5C_associated_SNPs_27413 0 0 1 0 1 Ribosome 1 0.500231643922344 1 0.999536712155312 hm5C_site_27859 DeepMRMD:1;iRNA_m5C:0.999536712155312 27860 chr5 53814569 53814569 1 + G T LUAD 53814572 + 53814552 53814592 41 AGCTGTGCGTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAG AGCTGTGCGTGGTGCTGTGGCCCTATGGCCCCGAGTGGCAG < 41bp 1 0.385466127290883 1 0.123204380273819 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814572 chr5:53814569 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_27414 0 0 0 0 0 chromatin 1 0.500231643920824 1 0.999536712158352 hm5C_site_27860 DeepMRMD:1;iRNA_m5C:0.999536712158352 27861 chr5 53814569 53814569 1 + G T LUAD 53814573 + 53814553 53814593 41 GCTGTGCGTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAGG GCTGTGCGTGGTGCTGTGGCCCTATGGCCCCGAGTGGCAGG < 41bp 1 0.109736242780892 1 0.222216367721558 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814573 chr5:53814569 nonsynonymous SNV 0.999 2 17 hm5C_associated_SNPs_27415 0 0 0 0 0 chromatin 1 0.500231643997753 1 0.999536712004493 hm5C_site_27861 DeepMRMD:1;iRNA_m5C:0.999536712004493 27862 chr5 53814569 53814569 1 + G T LUAD 53814580 + 53814560 53814600 41 GTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAGGAGAACCC GTGGTGCTGTGGCCCTATGGCCCCGAGTGGCAGGAGAACCC < 41bp 1 0.454450765871373 1 0.231883466243744 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814580 chr5:53814569 nonsynonymous SNV 0.999 2 10 hm5C_associated_SNPs_27416 0 0 0 0 0 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_27862 DeepMRMD:1;iRNA_m5C:0.999536712157818 27863 chr5 53814569 53814569 1 + G T LUAD 53814582 + 53814562 53814602 41 GGTGCTGGGGCCCTATGGCCCCGAGTGGCAGGAGAACCCCT GGTGCTGTGGCCCTATGGCCCCGAGTGGCAGGAGAACCCCT < 41bp 1 0.364530433749027 1 0.268654197454453 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814582 chr5:53814569 nonsynonymous SNV 0.999 2 8 hm5C_associated_SNPs_27418 0 0 0 0 0 chromatin 1 0.500231635350009 1 0.999536729299981 hm5C_site_27863 DeepMRMD:1;iRNA_m5C:0.999536729299981 27864 chr5 53814569 53814569 1 + G T LUAD 53814583 + 53814563 53814603 41 GTGCTGGGGCCCTATGGCCCCGAGTGGCAGGAGAACCCCTA GTGCTGTGGCCCTATGGCCCCGAGTGGCAGGAGAACCCCTA < 41bp 1 0.632559646887623 1 0.821121215820312 experiment 0.734880706224754 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814583 chr5:53814569 nonsynonymous SNV 0.999 2 7 hm5C_associated_SNPs_27419 0 0 0 0 0 chromatin 1 0.50023164392093 0.357757568359376 0.999536712158141 hm5C_site_27864 DeepMRMD:0.357757568359376;iRNA_m5C:0.999536712158141 27865 chr17 38151727 38151727 1 + G A LUAD 38151726 + 38151706 38151746 41 CGAATCTCCTTGGCTGACATCGCCCAGAAGCTGCAGTTGGA CGAATCTCCTTGGCTGACATCACCCAGAAGCTGCAGTTGGA < 41bp 1 0.273023012116337 1 0.279764145612717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38151726 chr17:38151727 nonsynonymous SNV 0.872 3 22 hm5C_associated_SNPs_27420 0 0 1 0 2 Ribosome 1 0.50023164730129 1 0.999536705397419 hm5C_site_27865 DeepMRMD:1;iRNA_m5C:0.999536705397419 27866 chr13 111164384 111164384 1 + G A LUAD 111164391 + 111164371 111164411 41 TGCAATGGAGGCCGCGGCACCTGCCACTACTACGCCAACAA TGCAATGGAGGCCACGGCACCTGCCACTACTACGCCAACAA < 41bp 1 0.163045841547445 1 0.195716977119446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111164391 chr13:111164384 nonsynonymous SNV 0.924 5 14 hm5C_associated_SNPs_27421 1 0 1 0 0 Cytosol 1 0.500231645468003 1 0.999536709063993 hm5C_site_27866 DeepMRMD:1;iRNA_m5C:0.999536709063993 Porencephaly Porencephaly 27867 chr7 129939236 129939236 1 + G T LUAD 129939222 + 129939202 129939242 41 ATCCCAGGGCTTAGAGTACGCAGTGACAATTGAGGACCTGC ATCCCAGGGCTTAGAGTACGCAGTGACAATTGAGTACCTGC < 41bp 1 0.57497905774631 1 0.258467495441437 experiment 0.850041884507381 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129939222 chr7:129939236 nonsynonymous SNV 0.478 4 35 hm5C_associated_SNPs_27422 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164391872 1 0.99953671216256 hm5C_site_27867 DeepMRMD:1;iRNA_m5C:0.99953671216256 27868 chr8 99102050 99102050 1 + G A LUAD 99102068 + 99102048 99102088 41 CAGAAGTATTGGACAGAAGTCAGCTTGTGGAAAAGCCTGTT CAAAAGTATTGGACAGAAGTCAGCTTGTGGAAAAGCCTGTT < 41bp 1 0.471305509636339 1 0.299825400114059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERICH5 ENSG00000177459 CDS Human protein_coding chr8:99102068 chr8:99102050 nonsynonymous SNV 0.004 0 3 hm5C_associated_SNPs_27423 0 0 0 0 0 exosome 1 0.500231643596464 1 0.999536712807071 hm5C_site_27868 DeepMRMD:1;iRNA_m5C:0.999536712807071 27869 chr18 19751577 19751577 1 + G A LUAD 19751565 + 19751545 19751585 41 TGTACCAGACCCTCGCCGCTCTCTCCAGCCAGGGTCCGGCC TGTACCAGACCCTCGCCGCTCTCTCCAGCCAGAGTCCGGCC < 41bp 1 0.286680841421873 1 0.028315007686615 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GATA6 ENSG00000141448 CDS Human protein_coding chr18:19751565 chr18:19751577 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_27424 0 0 0 0 0 Cytosol 1 0.500231641559988 1 0.999536716880024 hm5C_site_27869 DeepMRMD:1;iRNA_m5C:0.999536716880024 27870 chr4 123900467 123900467 1 + C G LUAD 123900482 + 123900462 123900502 41 TTACTCTGAAGGATTTCTTGCAGGCAATGAATGATATCAGA TTACTGTGAAGGATTTCTTGCAGGCAATGAATGATATCAGA < 41bp 1 0.313669850960905 1 0.393336474895477 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SPATA5 ENSG00000145375 CDS Human protein_coding chr4:123900482 chr4:123900467 nonsynonymous SNV 0.999 1 6 hm5C_associated_SNPs_27426 0 0 1 0 2 Nucleus 1 0.50023164428689 1 0.99953671142622 hm5C_site_27870 DeepMRMD:1;iRNA_m5C:0.99953671142622 27871 chr17 37358692 37358692 1 + G T LUAD 37358680 + 37358660 37358700 41 TGGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGTGT TGGCCCGCCGGAAGGGCAGGCACATGGGCATATGTAAGTGT < 41bp 1 0.339111302422185 1 0.27501368522644 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358680 chr17:37358692 nonsynonymous SNV 0.977 4 33 hm5C_associated_SNPs_27427 0 0 1 0 1 chromatin 1 0.500231645451699 1 0.999536709096603 hm5C_site_27871 DeepMRMD:1;iRNA_m5C:0.999536709096603 27872 chr17 37358692 37358692 1 + G T LUAD 37358688 + 37358668 37358708 41 CGGAAGGGCAGGCACATGGGCATAGGTAAGTGTGGTCATCT CGGAAGGGCAGGCACATGGGCATATGTAAGTGTGGTCATCT < 41bp 1 0.12920560479772 1 0.0858438313007355 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358688 chr17:37358692 nonsynonymous SNV 0.977 4 25 hm5C_associated_SNPs_27428 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27872 DeepMRMD:1;iRNA_m5C:0.999536712157815 27873 chr12 58174040 58174040 1 + G T LUAD 58174050 + 58174030 58174070 41 TCTCTCAGGGGGGGATGTTACCATCACTGACCTGCCCCTGG TCTCTCAGGGTGGGATGTTACCATCACTGACCTGCCCCTGG < 41bp 1 0.306403254391071 1 0.14102166891098 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EEF1AKMT3 ENSG00000123427 CDS Human protein_coding chr12:58174050 chr12:58174040 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_27429 0 0 1 0 1 unknown 1 0.500231643910469 1 0.999536712179061 hm5C_site_27873 DeepMRMD:1;iRNA_m5C:0.999536712179061 27874 chr2 127453712 127453712 1 + T C LUAD 127453726 + 127453706 127453746 41 GTACTTTATTTGAGGGACAACAGACTTCACTTCCCTGAATG GTACTTCATTTGAGGGACAACAGACTTCACTTCCCTGAATG < 41bp 1 0.474812858777487 1 0.548600614070892 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GYPC ENSG00000136732 CDS Human protein_coding chr2:127453726 chr2:127453712 synonymous SNV . 0 7 hm5C_associated_SNPs_27430 0 0 1 0 0 Endoplasmic reticulum 1 0.5002316439211 0.902798771858216 0.999536712157799 hm5C_site_27874 DeepMRMD:0.902798771858216;iRNA_m5C:0.999536712157799 27875 chr5 142264928 142264928 1 + T G LUAD 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAAGTT < 41bp 1 0.11041127291807 1 0.383642792701721 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264928 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_27431 0 0 1 0 2 Nucleus 1 0.500231771913758 1 0.999536456172484 hm5C_site_27875 DeepMRMD:1;iRNA_m5C:0.999536456172484 27876 chr6 33411147 33411147 1 + G C LUAD 33411133 + 33411113 33411153 41 GAACCCTCTCTTCCACATGGCTGCTGATGGGCCAGGTCCCC GAACCCTCTCTTCCACATGGCTGCTGATGGGCCACGTCCCC < 41bp 1 0.22019540962274 1 0.0256998836994171 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33411133 chr6:33411147 nonsynonymous SNV 0.790 0 35 hm5C_associated_SNPs_27432 0 0 1 0 0 chromatin 1 0.500231650268756 1 0.999536699462488 hm5C_site_27876 DeepMRMD:1;iRNA_m5C:0.999536699462488 27877 chr6 31598920 31598920 1 + G A LUAD 31598935 + 31598915 31598955 41 GGAGCGAGACTCCTCCAGTACCTCCCCCACCACCCTATCTG GGAGCAAGACTCCTCCAGTACCTCCCCCACCACCCTATCTG < 41bp 1 0.101623079567158 1 0.0378304421901703 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31598935 chr6:31598920 nonsynonymous SNV 0.995 3 6 hm5C_associated_SNPs_27433 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27877 DeepMRMD:1;iRNA_m5C:0.999536712157815 27878 chr6 31598920 31598920 1 + G A LUAD 31598940 + 31598920 31598960 41 GAGACTCCTCCAGTACCTCCCCCACCACCCTATCTGGCCAG AAGACTCCTCCAGTACCTCCCCCACCACCCTATCTGGCCAG < 41bp 1 0.143098591214195 1 0.583160281181335 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31598940 chr6:31598920 nonsynonymous SNV 0.995 3 1 hm5C_associated_SNPs_27434 0 0 1 0 1 Ribosome 1 0.500231643787847 0.83367943763733 0.999536712424306 hm5C_site_27878 DeepMRMD:0.83367943763733;iRNA_m5C:0.999536712424306 27879 chr17 16342885 16342885 1 + C G LUAD 16342874 + 16342854 16342894 41 GAAGCGATAACTGACGACGTCTAATGTCTATCTGACCGCAG GAAGCGATAACTGACGACGTCTAATGTCTATGTGACCGCAG < 41bp 1 0.238778173910938 1 0.183290958404541 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342874 chr17:16342885 . . 0 32 hm5C_associated_SNPs_27435 0 0 1 0 1 Nucleus 1 0.500231643921096 1 0.999536712157807 hm5C_site_27879 DeepMRMD:1;iRNA_m5C:0.999536712157807 27880 chr17 16342885 16342885 1 + C G LUAD 16342881 + 16342861 16342901 41 TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGA TAACTGACGACGTCTAATGTCTATGTGACCGCAGTCGCTGA < 41bp 1 0.287616380410548 1 0.185306340456009 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342881 chr17:16342885 . . 0 25 hm5C_associated_SNPs_27436 0 0 1 0 1 Nucleus 1 0.500266523230042 1 0.999466953539916 hm5C_site_27880 DeepMRMD:1;iRNA_m5C:0.999466953539916 27881 chr11 107917073 107917073 1 + G C LUAD 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTCAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.434882997173014 1 0.47705215215683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917073 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_27437 0 0 1 0 2 Ribosome 1 0.500231643929151 1 0.999536712141699 hm5C_site_27881 DeepMRMD:1;iRNA_m5C:0.999536712141699 27882 chr12 102120165 102120165 1 + C T LUAD 102120175 + 102120155 102120195 41 GACTGCATGTCATCAAGCACCTGAACAGGTTCACAAGCATA GACTGCATGTTATCAAGCACCTGAACAGGTTCACAAGCATA < 41bp 1 0.630518280265929 1 0.132444977760315 experiment 0.738963439468141 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHPT1 ENSG00000111666 CDS Human protein_coding chr12:102120175 chr12:102120165 nonsynonymous SNV 0.985 1 11 hm5C_associated_SNPs_27438 0 0 1 0 2 Ribosome 1 0.500231644064113 1 0.999536711871774 hm5C_site_27882 DeepMRMD:1;iRNA_m5C:0.999536711871774 27883 chr17 75398186 75398186 1 + C G LUAD 75398205 + 75398185 75398225 41 TCCACCCCACCCCGGAGGGTCCAGACTCCCCTACTCCGAGC TGCACCCCACCCCGGAGGGTCCAGACTCCCCTACTCCGAGC < 41bp 1 0.363673667228737 1 0.268301725387573 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 CDS Human protein_coding chr17:75398205 chr17:75398186 nonsynonymous SNV 0.999 3 2 hm5C_associated_SNPs_27439 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_27883 DeepMRMD:1;iRNA_m5C:0.999536712157817 27884 chr3 183369006 183369006 1 + G A LUAD 183369020 + 183369000 183369040 41 CATGAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT CATGAAACAAGACGGTACCACATACTTGGGAATGAAATGAT < 41bp 1 0.120852241052267 1 0.182456225156784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183369020 chr3:183369006 nonsynonymous SNV 0.998 1 7 hm5C_associated_SNPs_27440 0 0 1 0 1 Ribosome 1 0.50040924868777 1 0.99918150262446 hm5C_site_27884 DeepMRMD:1;iRNA_m5C:0.99918150262446 27885 chr6 44360513 44360513 1 + C G LUAD 44360506 + 44360486 44360526 41 ATGCCAACTCAGTGGAGGACCATTGCTCCAATCATTGGAAG ATGCCAACTCAGTGGAGGACCATTGCTGCAATCATTGGAAG < 41bp 1 0.295884740150729 1 0.22822043299675 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC5L ENSG00000096401 CDS Human protein_coding chr6:44360506 chr6:44360513 nonsynonymous SNV 0.998 4 28 hm5C_associated_SNPs_27442 0 0 1 0 1 Nucleus 1 0.500233481124121 1 0.999533037751758 hm5C_site_27885 DeepMRMD:1;iRNA_m5C:0.999533037751758 27886 chr17 47904772 47904772 1 + G C LUAD 47904766 + 47904746 47904786 41 CCATTGTTCTCCCTCAGGACCTGATTGATGAGTGGATAGCC CCATTGTTCTCCCTCAGGACCTGATTCATGAGTGGATAGCC < 41bp 1 0.204041602331219 1 0.0221716463565826 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KAT7 ENSG00000136504 CDS Human protein_coding chr17:47904766 chr17:47904772 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_27443 0 0 1 0 1 Cytosol 1 0.500231643919859 1 0.999536712160283 hm5C_site_27886 DeepMRMD:1;iRNA_m5C:0.999536712160283 27887 chr5 112164574 112164574 1 + A C LUAD 112164560 + 112164540 112164580 41 GATTAATTTGCAGGTTATTGCGAGTGTTTTGAGGAATTTGT GATTAATTTGCAGGTTATTGCGAGTGTTTTGAGGCATTTGT < 41bp 1 0.201742355229343 1 0.43724599480629 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC ENSG00000134982;ENSG00000258864 CDS Human other chr5:112164560 chr5:112164574 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_27444 0 0 1 0 2 Cytosol 1 0.500231643868253 1 0.999536712263494 hm5C_site_27887 DeepMRMD:1;iRNA_m5C:0.999536712263494 27888 chr1 229783448 229783448 1 + C T LUAD 229783428 + 229783408 229783448 41 TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTC TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTT < 41bp 1 0.248715182570428 1 0.158735692501068 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control URB2 ENSG00000135763 CDS Human protein_coding chr1:229783428 chr1:229783448 synonymous SNV . 0 41 hm5C_associated_SNPs_27445 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27888 DeepMRMD:1;iRNA_m5C:0.999536712157815 27889 chr14 21963405 21963405 1 + G A LUAD 21963397 + 21963377 21963417 41 TCTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAA TCTTCTCACAGGTTGAGTCTCCTTCTCAAATGGATGTTGAA < 41bp 1 0.0210149110494532 1 0.0469260513782501 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963397 chr14:21963405 synonymous SNV . 0 29 hm5C_associated_SNPs_27446 0 0 1 0 1 Ribosome 1 0.500231644832976 1 0.999536710334047 hm5C_site_27889 DeepMRMD:1;iRNA_m5C:0.999536710334047 27890 chr14 21963405 21963405 1 + G A LUAD 21963398 + 21963378 21963418 41 CTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAAT CTTCTCACAGGTTGAGTCTCCTTCTCAAATGGATGTTGAAT < 41bp 1 0.0811123161295936 1 0.0265757739543915 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963398 chr14:21963405 synonymous SNV . 0 28 hm5C_associated_SNPs_27447 0 0 1 0 1 Ribosome 1 0.500231644283185 1 0.99953671143363 hm5C_site_27890 DeepMRMD:1;iRNA_m5C:0.99953671143363 27891 chr17 40716076 40716076 1 + C T LUAD 40716079 + 40716059 40716099 41 TCCTTGACTTTTGATGTCATCCCCCTGCTGGACCCCTATGG TCCTTGACTTTTGATGTTATCCCCCTGCTGGACCCCTATGG < 41bp 1 0.293325678627816 1 0.133931934833527 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40716079 chr17:40716076 synonymous SNV . 0 18 hm5C_associated_SNPs_27448 0 0 1 0 1 Ribosome 1 0.500231643918323 1 0.999536712163353 hm5C_site_27891 DeepMRMD:1;iRNA_m5C:0.999536712163353 27892 chr2 198571382 198571382 1 + C G LUAD 198571398 + 198571378 198571418 41 CCTTCTGAGACCTACCCAGCCTTCTGCACTACCTGCTTCCC CCTTGTGAGACCTACCCAGCCTTCTGCACTACCTGCTTCCC < 41bp 1 0.27074469153182 1 0.0204371213912964 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARS2 ENSG00000247626 CDS Human protein_coding chr2:198571398 chr2:198571382 nonsynonymous SNV 0.884 2 5 hm5C_associated_SNPs_27449 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27892 DeepMRMD:1;iRNA_m5C:0.999536712157815 27893 chr20 6750998 6750998 1 + G C LUAD 6750992 + 6750972 6751012 41 CCCACCCCCAGCAGGGACGCCGTGGTGCCCCCCTACATGCT CCCACCCCCAGCAGGGACGCCGTGGTCCCCCCCTACATGCT < 41bp 1 0.485797120420914 1 0.16729000210762 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMP2 ENSG00000125845 CDS Human protein_coding chr20:6750992 chr20:6750998 synonymous SNV . 0 27 hm5C_associated_SNPs_27450 0 0 0 0 0 Ribosome 1 0.500231643921095 1 0.999536712157809 hm5C_site_27893 DeepMRMD:1;iRNA_m5C:0.999536712157809 27894 chr11 66411316 66411316 1 + G A LUAD 66411334 + 66411314 66411354 41 TCGATCCCTACGATAGACACCTGTTGCCGACCTCAGGAGCT TCAATCCCTACGATAGACACCTGTTGCCGACCTCAGGAGCT < 41bp 1 0.133687221232918 1 0.0544614791870117 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66411334 chr11:66411316 nonsynonymous SNV 0.998 0 3 hm5C_associated_SNPs_27451 0 0 1 0 0 unknown 1 0.500231644923504 1 0.999536710152992 hm5C_site_27894 DeepMRMD:1;iRNA_m5C:0.999536710152992 27895 chr9 130420698 130420698 1 + G C LUAD 130420683 + 130420663 130420703 41 ATATCAATAAGCGCAGAGAGCCGCTCCCCAGCCTGGAGGCT ATATCAATAAGCGCAGAGAGCCGCTCCCCAGCCTGCAGGCT < 41bp 1 0.12267622259876 1 0.0853905379772186 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420683 chr9:130420698 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_27452 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_27895 DeepMRMD:1;iRNA_m5C:0.999536712157815 27896 chr4 1742645 1742645 1 + G T LUAD 1742652 + 1742632 1742672 41 TCTGAACTCCATGGAGAAGTCCTTCTCCGACCTCTTCAAGC TCTGAACTCCATGTAGAAGTCCTTCTCCGACCTCTTCAAGC < 41bp 1 0.018445272321328 1 0.0165710747241974 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1742652 chr4:1742645 stopgain 0.997 1 14 hm5C_associated_SNPs_27453 0 0 1 0 2 Cytosol 1 0.500231643933917 1 0.999536712132166 hm5C_site_27896 DeepMRMD:1;iRNA_m5C:0.999536712132166 27897 chr6 42976164 42976164 1 + T A LUAD 42976172 + 42976152 42976192 41 TCCTCATCCGTGTCCTACTTCCCCTTCACAAGGTCAAGTCC TCCTCATCCGTGACCTACTTCCCCTTCACAAGGTCAAGTCC < 41bp 1 0.196696549341606 1 0.0876607000827789 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42976172 chr6:42976164 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_27454 0 0 1 0 2 Ribosome 1 0.500231637562448 1 0.999536724875103 hm5C_site_27897 DeepMRMD:1;iRNA_m5C:0.999536724875103 27898 chr12 132334399 132334399 1 + C T LUAD 132334394 + 132334374 132334414 41 ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCGACTTC ATAACGTAGAGGAAGGATACCCGCGTCCCGTCTCCGACTTC < 41bp 1 0.308455225536262 1 0.0506669878959656 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334394 chr12:132334399 synonymous SNV . 0 26 hm5C_associated_SNPs_27455 0 0 1 0 1 Cytosol 1 0.500231643921095 1 0.999536712157811 hm5C_site_27898 DeepMRMD:1;iRNA_m5C:0.999536712157811 27899 chr22 38201991 38201991 1 + A G LUAD 38202011 + 38201991 38202031 41 AGAAGAAGCTGGCTGCCACGCCCAAGAAAGCCAAAAAACCC GGAAGAAGCTGGCTGCCACGCCCAAGAAAGCCAAAAAACCC < 41bp 1 0.553995113012729 1 0.426363468170166 experiment 0.892009773974542 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient H1F0 ENSG00000189060 CDS Human protein_coding chr22:38202011 chr22:38201991 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_27456 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27899 DeepMRMD:1;iRNA_m5C:0.999536712157815 27900 chr1 44071216 44071216 1 + G T LUAD 44071222 + 44071202 44071242 41 GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGG GGTTCTACATTGTTTTGGTGCCCATTGACCGTGTGGGCGGG < 41bp 1 0.0868171702045869 1 0.06928950548172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071222 chr1:44071216 nonsynonymous SNV 0.988 2 15 hm5C_associated_SNPs_27457 0 0 1 0 2 Ribosome 1 0.499971122949578 1 1 hm5C_site_27900 DeepMRMD:1;iRNA_m5C:1 27901 chr1 44071216 44071216 1 + G T LUAD 44071223 + 44071203 44071243 41 GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGA GTTCTACATTGTTTTGGTGCCCATTGACCGTGTGGGCGGGA < 41bp 1 0.0400763863200327 1 0.127997398376465 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071223 chr1:44071216 nonsynonymous SNV 0.988 2 14 hm5C_associated_SNPs_27458 0 0 1 0 2 Ribosome 1 0.500232006012268 1 0.999535987975464 hm5C_site_27901 DeepMRMD:1;iRNA_m5C:0.999535987975464 27902 chr2 183616853 183616853 1 + C T LUAD 183616850 + 183616830 183616870 41 AGTTACGAAGAGCATCAAATCTTCTTTATGGTCAGCTTAAG AGTTACGAAGAGCATCAAATCTTTTTTATGGTCAGCTTAAG < 41bp 1 0.206702642113612 1 0.134610295295715 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183616850 chr2:183616853 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_27459 0 0 1 0 2 Ribosome 1 0.500231643922461 1 0.999536712155078 hm5C_site_27902 DeepMRMD:1;iRNA_m5C:0.999536712155078 27903 chr21 42629148 42629148 1 + C T LUAD 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCTCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG < 41bp 1 0.559559048874507 1 0.138466894626617 experiment 0.880881902250985 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629148 nonsynonymous SNV 0.860 0 6 hm5C_associated_SNPs_27460 0 0 1 0 1 Ribosome 1 0.500231643922566 1 0.999536712154868 hm5C_site_27903 DeepMRMD:1;iRNA_m5C:0.999536712154868 27904 chr19 50099261 50099261 1 + G T LUAD 50099242 + 50099222 50099262 41 CATGGGGGTGGCTGGGGACCCAGCTCCCTGGGAGGCGGCGG CATGGGGGTGGCTGGGGACCCAGCTCCCTGGGAGGCGGCTG < 41bp 1 0.641681375756715 1 0.712197303771973 experiment 0.71663724848657 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRR12 ENSG00000126464 CDS Human protein_coding chr19:50099242 chr19:50099261 nonsynonymous SNV 0.835 1 40 hm5C_associated_SNPs_27461 0 0 1 0 0 Exosome 1 0.50023164392108 0.575605392456054 0.99953671215784 hm5C_site_27904 DeepMRMD:0.575605392456054;iRNA_m5C:0.99953671215784 27905 chr16 712767 712767 1 + A T LUAD 712768 + 712748 712788 41 GGACATGGGCGTCGTGGGCACCACGGCGGGCACGCTGTGGT GGACATGGGCGTCGTGGGCTCCACGGCGGGCACGCTGTGGT < 41bp 1 0.257585352226693 1 0.508145868778229 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712768 chr16:712767 nonsynonymous SNV 0.081 1 20 hm5C_associated_SNPs_27462 0 0 1 0 3 Cytosol 1 0.50023085751536 0.983708262443542 0.999538284969281 hm5C_site_27905 DeepMRMD:0.983708262443542;iRNA_m5C:0.999538284969281 27906 chr7 135333220 135333220 1 + A G LUAD 135333200 + 135333180 135333220 41 GAGAATCACTACAAAAGAAACTTCTGGACATTGAAGGATTA GAGAATCACTACAAAAGAAACTTCTGGACATTGAAGGATTG < 41bp 1 0.0667212223918171 1 0.184102326631546 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135333200 chr7:135333220 synonymous SNV . 0 41 hm5C_associated_SNPs_27463 0 0 1 0 1 Cytosol 1 0.500231643965883 1 0.999536712068235 hm5C_site_27906 DeepMRMD:1;iRNA_m5C:0.999536712068235 27907 chr16 27761018 27761018 1 + C T LUAD 27761012 + 27760992 27761032 41 GTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG GTGCCTTCGACCGCTCCCACCGGGGATGCATCTCCAACACG < 41bp 1 0.609383332075696 1 0.787214398384094 experiment 0.781233335848608 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27761012 chr16:27761018 nonsynonymous SNV 0.666 4 27 hm5C_associated_SNPs_27464 0 0 0 0 0 Nucleus 1 0.500231643921121 0.425571203231812 0.999536712157758 hm5C_site_27907 DeepMRMD:0.425571203231812;iRNA_m5C:0.999536712157758 27908 chr3 107524268 107524268 1 + G T LUAD 107524266 + 107524246 107524286 41 ATGGACAGCCAAAAGAAATGCCGCAGGCTCCTGTACTTATT ATGGACAGCCAAAAGAAATGCCTCAGGCTCCTGTACTTATT < 41bp 1 0.218807876941333 1 0.0968212485313416 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BBX ENSG00000114439 CDS Human protein_coding chr3:107524266 chr3:107524268 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_27465 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27908 DeepMRMD:1;iRNA_m5C:0.999536712157815 27909 chr7 142458452 142458452 1 + C A LUAD 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTGGGGGCTACAAATGTGA < 41bp 1 0.180455150854205 1 0.108464062213898 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458452 nonsynonymous SNV 0.033 2 36 hm5C_associated_SNPs_27466 0 0 0 0 1 Cytosol 1 0.500231643021015 1 0.999536713957971 hm5C_site_27909 DeepMRMD:1;iRNA_m5C:0.999536713957971 27910 chr7 142458452 142458452 1 + C A LUAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTACAAATGTGAGGAGAATTC < 41bp 1 0.376784977994652 1 0.41112431883812 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458452 nonsynonymous SNV 0.033 2 27 hm5C_associated_SNPs_27467 0 0 0 0 1 Cytosol 1 0.500231643922858 1 0.999536712154284 hm5C_site_27910 DeepMRMD:1;iRNA_m5C:0.999536712154284 27911 chr7 142458452 142458452 1 + C A LUAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTACAAATGTGAGGAGAATTCTGT < 41bp 1 0.147190775147619 1 0.443942308425903 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458452 nonsynonymous SNV 0.033 2 24 hm5C_associated_SNPs_27468 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27911 DeepMRMD:1;iRNA_m5C:0.999536712157815 27912 chr7 142458452 142458452 1 + C A LUAD 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAAATGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.186032538570562 1 0.161186784505844 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458452 nonsynonymous SNV 0.033 2 7 hm5C_associated_SNPs_27469 0 0 0 0 1 Cytosol 1 0.500231643920941 1 0.999536712158119 hm5C_site_27912 DeepMRMD:1;iRNA_m5C:0.999536712158119 27913 chr7 142458452 142458452 1 + C A LUAD 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AAATGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA < 41bp 1 0.129873470299915 1 0.204436182975769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458452 nonsynonymous SNV 0.033 2 3 hm5C_associated_SNPs_27470 0 0 0 0 1 Cytosol 1 0.500231643897691 1 0.999536712204618 hm5C_site_27913 DeepMRMD:1;iRNA_m5C:0.999536712204618 27914 chr7 142458452 142458452 1 + C A LUAD 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT AATGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.091936591324055 1 0.124690115451813 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458452 nonsynonymous SNV 0.033 2 2 hm5C_associated_SNPs_27471 0 0 0 0 1 Cytosol 1 0.500231635487495 1 0.99953672902501 hm5C_site_27914 DeepMRMD:1;iRNA_m5C:0.99953672902501 27915 chr7 142458452 142458452 1 + C A LUAD 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT ATGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.0164707121127987 1 0.0630029141902924 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458452 nonsynonymous SNV 0.033 2 1 hm5C_associated_SNPs_27472 0 0 0 0 1 Cytosol 1 0.500231643911799 1 0.999536712176402 hm5C_site_27915 DeepMRMD:1;iRNA_m5C:0.999536712176402 27916 chr16 30941500 30941500 1 + G T LUAD 30941505 + 30941485 30941525 41 GCCAGCTGCTGGAACGGGTGCCTGACACCTCCTCTTCCTCC GCCAGCTGCTGGAACTGGTGCCTGACACCTCCTCTTCCTCC < 41bp 1 0.163070801857993 1 0.146452575922012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30941505 chr16:30941500 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_27473 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27916 DeepMRMD:1;iRNA_m5C:0.999536712157815 27917 chr20 18142502 18142502 1 + G C LUAD 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CCATCATTACTGTTCAGGGACTTAGAAAACGAGCAAGTCGG < 41bp 1 0.107420275569344 1 0.0245347321033478 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142502 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_27474 0 0 1 0 2 Nucleus 1 0.50023164392109 1 0.999536712157819 hm5C_site_27917 DeepMRMD:1;iRNA_m5C:0.999536712157819 27918 chr11 64787927 64787927 1 + A G LUAD 64787908 + 64787888 64787928 41 CAGCGCCTGGCCGGAGCAACCCTCCTCATCTTTGCTAATAA CAGCGCCTGGCCGGAGCAACCCTCCTCATCTTTGCTAATGA < 41bp 1 0.0414157637444607 1 0.097655713558197 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARL2 ENSG00000213465 CDS Human protein_coding chr11:64787908 chr11:64787927 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_27475 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_27918 DeepMRMD:1;iRNA_m5C:0.999536712157815 27919 chr7 150817200 150817200 1 + A G LUAD 150817203 + 150817183 150817223 41 CCCCCACACCCATCCGAAAGCAGTCCAAGCGGCGCTCCAAC CCCCCACACCCATCCGAGAGCAGTCCAAGCGGCGCTCCAAC < 41bp 1 0.0975039777302168 1 0.804827928543091 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150817203 chr7:150817200 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_27477 0 0 1 0 1 Cytosol 1 0.500231643921099 0.390344142913818 0.999536712157803 hm5C_site_27919 DeepMRMD:0.390344142913818;iRNA_m5C:0.999536712157803 27920 chr11 46693827 46693827 1 + C G LUAD 46693815 + 46693795 46693835 41 TCCGGTACAGGACTCATTACCAGAGAAGCTGGCTGTGCATG TCCGGTACAGGACTCATTACCAGAGAAGCTGGGTGTGCATG < 41bp 1 0.627294834784137 1 0.947098314762115 experiment 0.745410330431726 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG13 ENSG00000175224 CDS Human protein_coding chr11:46693815 chr11:46693827 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_27478 0 0 1 0 1 Ribosome 1 0.50023164362717 0.10580337047577 0.99953671274566 hm5C_site_27920 DeepMRMD:0.10580337047577;iRNA_m5C:0.99953671274566 27921 chr7 79828668 79828668 1 + G T LUAD 79828675 + 79828655 79828695 41 TTCAACAGATCCCGAGAGTACCAGCTTAATGATTCTGCAGC TTCAACAGATCCCTAGAGTACCAGCTTAATGATTCTGCAGC < 41bp 1 0.219709031843121 1 0.0550460815429688 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79828675 chr7:79828668 nonsynonymous SNV 1.000 5 14 hm5C_associated_SNPs_27479 0 0 1 0 1 Cytosol 1 0.500232175571786 1 0.999535648856427 hm5C_site_27921 DeepMRMD:1;iRNA_m5C:0.999535648856427 27922 chr7 79828668 79828668 1 + G T LUAD 79828676 + 79828656 79828696 41 TCAACAGATCCCGAGAGTACCAGCTTAATGATTCTGCAGCA TCAACAGATCCCTAGAGTACCAGCTTAATGATTCTGCAGCA < 41bp 1 0.589597299568 1 0.349731385707855 experiment 0.820805400864001 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79828676 chr7:79828668 nonsynonymous SNV 1.000 5 13 hm5C_associated_SNPs_27480 0 0 1 0 1 Cytosol 1 0.500231206220447 1 0.999537587559106 hm5C_site_27922 DeepMRMD:1;iRNA_m5C:0.999537587559106 27923 chr8 77619809 77619809 1 + G T LUAD 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCCGTCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC < 41bp 1 0.181466984919398 1 0.510817289352417 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619809 synonymous SNV . 0 5 hm5C_associated_SNPs_27482 0 0 1 0 1 Ribosome 1 0.500231643921092 0.978365421295166 0.999536712157815 hm5C_site_27923 DeepMRMD:0.978365421295166;iRNA_m5C:0.999536712157815 27924 chr7 128846155 128846155 1 + T G LUAD 128846171 + 128846151 128846191 41 CACCTGCTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC CACCGGCTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC < 41bp 1 0.269285491438611 1 0.0311254858970642 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128846171 chr7:128846155 nonsynonymous SNV 0.997 5 5 hm5C_associated_SNPs_27483 0 0 0 0 1 cytosol 1 0.500202201164992 1 0.999595597670016 hm5C_site_27924 DeepMRMD:1;iRNA_m5C:0.999595597670016 27925 chr1 231700291 231700291 1 + G A LUAD 231700298 + 231700278 231700318 41 CCTCTGATGCACAGGATAAGCAGTTTGGTACTTGGAGACTG CCTCTGATGCACAAGATAAGCAGTTTGGTACTTGGAGACTG < 41bp 1 0.449026665809192 1 0.0966461300849915 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSNAX ENSG00000116918 CDS Human protein_coding chr1:231700298 chr1:231700291 synonymous SNV . 0 14 hm5C_associated_SNPs_27484 0 0 1 0 1 Ribosome 1 0.500231643920958 1 0.999536712158084 hm5C_site_27925 DeepMRMD:1;iRNA_m5C:0.999536712158084 27926 chr17 46128597 46128597 1 + C T LUAD 46128578 + 46128558 46128598 41 GGACGTGGATACTTACCTGACCTCACAGCTTCCCCCACTCC GGACGTGGATACTTACCTGACCTCACAGCTTCCCCCACTTC < 41bp 1 0.204375373540405 1 0.0204247534275055 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128578 chr17:46128597 synonymous SNV . 0 40 hm5C_associated_SNPs_27485 0 0 1 0 0 Ribosome 1 0.500231643918495 1 0.999536712163011 hm5C_site_27926 DeepMRMD:1;iRNA_m5C:0.999536712163011 27927 chr17 46128597 46128597 1 + C T LUAD 46128592 + 46128572 46128612 41 ACCTGACCTCACAGCTTCCCCCACTCCGGGAGATCATCCTG ACCTGACCTCACAGCTTCCCCCACTTCGGGAGATCATCCTG < 41bp 1 0.188131994414565 1 0.0903696417808533 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128592 chr17:46128597 synonymous SNV . 0 26 hm5C_associated_SNPs_27486 0 0 1 0 0 Ribosome 1 0.500231643913917 1 0.999536712172167 hm5C_site_27927 DeepMRMD:1;iRNA_m5C:0.999536712172167 27928 chr17 58024113 58024113 1 + C T LUAD 58024120 + 58024100 58024140 41 CTTTTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATG CTTTTCCCATGATTTCCAAACGGCCAGAGCACCTGCGTATG < 41bp 1 0.480134610138985 1 0.369245171546936 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58024120 chr17:58024113 synonymous SNV . 0 14 hm5C_associated_SNPs_27487 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27928 DeepMRMD:1;iRNA_m5C:0.999536712157815 27929 chr17 58024113 58024113 1 + C T LUAD 58024123 + 58024103 58024143 41 TTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATGAAT TTCCCATGATTTCCAAACGGCCAGAGCACCTGCGTATGAAT < 41bp 1 0.367138457905341 1 0.141969054937363 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58024123 chr17:58024113 synonymous SNV . 0 11 hm5C_associated_SNPs_27488 0 0 0 0 0 Ribosome 1 0.500231643921099 1 0.999536712157802 hm5C_site_27929 DeepMRMD:1;iRNA_m5C:0.999536712157802 27930 chr1 161761933 161761933 1 + G T LUAD 161761929 + 161761909 161761949 41 TCCAGAAAATGGACTGACTCCAAAGAAAAAAATTCAGGTGA TCCAGAAAATGGACTGACTCCAAATAAAAAAATTCAGGTGA < 41bp 1 0.24769004749794 1 0.749476850032806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161761929 chr1:161761933 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_27489 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643671618 0.501046299934388 0.999536712656765 hm5C_site_27930 DeepMRMD:0.501046299934388;iRNA_m5C:0.999536712656765 27931 chr16 67917910 67917910 1 + G T LUAD 67917892 + 67917872 67917912 41 GCCGTGATGCACCTGGACCACAGTGACCCCATCACTCGGGA GCCGTGATGCACCTGGACCACAGTGACCCCATCACTCGTGA < 41bp 1 0.566229277183758 1 0.30531769990921 experiment 0.867541445632484 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917892 chr16:67917910 synonymous SNV . 0 39 hm5C_associated_SNPs_27490 0 0 1 0 1 Cytosol 1 0.50023164380522 1 0.99953671238956 hm5C_site_27931 DeepMRMD:1;iRNA_m5C:0.99953671238956 27932 chr12 6647021 6647021 1 + C T LUAD 6647018 + 6646998 6647038 41 CAAGAAGGTGGTGAAGCAGGCGTCGGAGGGCCCCCTCAAGG CAAGAAGGTGGTGAAGCAGGCGTTGGAGGGCCCCCTCAAGG < 41bp 1 0.279796330623387 1 0.514114856719971 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647018 chr12:6647021 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_27491 0 0 1 0 0 Ribosome 1 0.500231643921092 0.971770286560058 0.999536712157815 hm5C_site_27932 DeepMRMD:0.971770286560058;iRNA_m5C:0.999536712157815 27933 chr1 231401781 231401781 1 + A C LUAD 231401783 + 231401763 231401803 41 TTCTGAATATTGTGATGGAGCCATTTTTTAAAAGAGAAGTT TTCTGAATATTGTGATGGCGCCATTTTTTAAAAGAGAAGTT < 41bp 1 0.0697179821722929 1 0.0602617561817169 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401783 chr1:231401781 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_27492 0 0 1 0 1 Cytosol 1 0.500231644180816 1 0.999536711638368 hm5C_site_27933 DeepMRMD:1;iRNA_m5C:0.999536711638368 27934 chr17 48433491 48433491 1 + C A LUAD 48433472 + 48433452 48433492 41 TTCCACACGGTGCTGGAGAACAGCCTGGCCTGTGAGACCCT TTCCACACGGTGCTGGAGAACAGCCTGGCCTGTGAGACCAT < 41bp 1 0.422875953455978 1 0.328668534755707 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48433472 chr17:48433491 nonsynonymous SNV 0.991 1 40 hm5C_associated_SNPs_27494 0 0 1 0 1 nucleolus 1 0.500231643626746 1 0.999536712746507 hm5C_site_27934 DeepMRMD:1;iRNA_m5C:0.999536712746507 27935 chr16 601521 601521 1 + G T LUAD 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GTCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC < 41bp 1 0.0286059199197363 1 0.0536355376243591 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601521 synonymous SNV . 0 2 hm5C_associated_SNPs_27495 0 0 1 0 1 chromatin 1 0.500231644707681 1 0.999536710584639 hm5C_site_27935 DeepMRMD:1;iRNA_m5C:0.999536710584639 27936 chrX 73045857 73045857 1 + C A LUAD 73045845 - 73045825 73045865 41 GACAGCCTGAACTCCCTGCTCATAGTAGTGGCCAAATAATT GACAGCCTTAACTCCCTGCTCATAGTAGTGGCCAAATAATT < 41bp 1 0.086211978439634 1 0.163065105676651 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045845 chrX:73045857 . . 0 9 hm5C_associated_SNPs_27496 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_27936 DeepMRMD:1;iRNA_m5C:0.999536712157815 27937 chrX 73045857 73045857 1 + C A LUAD 73045854 - 73045834 73045874 41 TCCCAAGGGGACAGCCTGAACTCCCTGCTCATAGTAGTGGC TCCCAAGGGGACAGCCTTAACTCCCTGCTCATAGTAGTGGC < 41bp 1 0.409240248144538 1 0.785936117172241 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045854 chrX:73045857 . . 0 18 hm5C_associated_SNPs_27497 0 0 1 0 0 unknown 1 0.500231643921092 0.428127765655518 0.999536712157815 hm5C_site_27937 DeepMRMD:0.428127765655518;iRNA_m5C:0.999536712157815 27938 chrX 73045857 73045857 1 + C A LUAD 73045859 - 73045839 73045879 41 CGAGGTCCCAAGGGGACAGCCTGAACTCCCTGCTCATAGTA CGAGGTCCCAAGGGGACAGCCTTAACTCCCTGCTCATAGTA < 41bp 1 0.159867889280433 1 0.451558530330658 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045859 chrX:73045857 . . 0 23 hm5C_associated_SNPs_27498 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_27938 DeepMRMD:1;iRNA_m5C:0.999536712157812 27939 chrX 73045857 73045857 1 + C A LUAD 73045873 - 73045853 73045893 41 TGCCTGGGACAAAGCGAGGTCCCAAGGGGACAGCCTGAACT TGCCTGGGACAAAGCGAGGTCCCAAGGGGACAGCCTTAACT < 41bp 1 0.200416849131871 1 0.391277462244034 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045873 chrX:73045857 . . 0 37 hm5C_associated_SNPs_27500 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_27939 DeepMRMD:1;iRNA_m5C:0.999536712157815 27940 chr3 132226082 132226082 1 + G T LUAD 132226097 + 132226077 132226117 41 AAAGGGTGATTGTGACAAAACTTATGGATCAGAATTTGTCT AAAGGTTGATTGTGACAAAACTTATGGATCAGAATTTGTCT < 41bp 1 0.0607640709112938 1 0.0652979016304016 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNAJC13 ENSG00000138246 CDS Human protein_coding chr3:132226097 chr3:132226082 nonsynonymous SNV 0.996 4 6 hm5C_associated_SNPs_27501 0 0 0 0 0 Nucleus 1 0.50023190638441 1 0.999536187231181 hm5C_site_27940 DeepMRMD:1;iRNA_m5C:0.999536187231181 27941 chrX 123191729 123191729 1 + A G LUAD 123191735 + 123191715 123191755 41 GGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATG GGCTCTTCAGTCGTGGAGATCCAGAGGAGGATGGAATGATG < 41bp 1 0.521068215636276 1 0.659357190132141 experiment 0.957863568727448 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123191735 chrX:123191729 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_27502 0 0 1 0 2 Nucleus 1 0.500231643920306 0.681285619735718 0.999536712159388 hm5C_site_27941 DeepMRMD:0.681285619735718;iRNA_m5C:0.999536712159388 27942 chr14 102452915 102452915 1 + G T LUAD 102452896 + 102452876 102452916 41 AACCAGCTTTACCCGTTTGCCATCTCACTGATCGAGAGCGT AACCAGCTTTACCCGTTTGCCATCTCACTGATCGAGAGCTT < 41bp 1 0.0627200652385863 1 0.132441937923431 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102452896 chr14:102452915 nonsynonymous SNV 0.860 4 40 hm5C_associated_SNPs_27503 0 0 1 0 0 Cytosol 1 0.500231643830371 1 0.999536712339259 hm5C_site_27942 DeepMRMD:1;iRNA_m5C:0.999536712339259 27943 chr2 207174855 207174855 1 + T C LUAD 207174847 + 207174827 207174867 41 TTTGATGATGACTGTGAGACCAAAAAAGTTTCTTCGAAGGG TTTGATGATGACTGTGAGACCAAAAAAGCTTCTTCGAAGGG < 41bp 1 0.484400579019617 1 0.161745309829712 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207174847 chr2:207174855 nonsynonymous SNV 0.003 0 29 hm5C_associated_SNPs_27504 0 0 1 0 0 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_27943 DeepMRMD:1;iRNA_m5C:0.999536712157818 27944 chr1 151006393 151006393 1 + A T LUAD 151006407 + 151006387 151006427 41 TCTCGAAAGAAACTTCTGCCCCTGCTCCAGGAAGCCCTGTC TCTCGATAGAAACTTCTGCCCCTGCTCCAGGAAGCCCTGTC < 41bp 1 0.121541582123775 1 0.0612677931785583 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:151006407 chr1:151006393 stopgain 0.998 1 7 hm5C_associated_SNPs_27505 0 0 1 0 0 chromatin 1 0.500231644007173 1 0.999536711985654 hm5C_site_27944 DeepMRMD:1;iRNA_m5C:0.999536711985654 27945 chr1 114450790 114450790 1 + A C LUAD 114450803 + 114450783 114450823 41 CGAAAACACCCACAACATAACATAAAGATTGGTGAGTTGTT CGAAAACCCCCACAACATAACATAAAGATTGGTGAGTTGTT < 41bp 1 0.277128125689077 1 0.0822244584560394 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114450803 chr1:114450790 nonsynonymous SNV 0.902 3 8 hm5C_associated_SNPs_27507 0 0 1 0 1 chromatin 1 0.500231854963436 1 0.999536290073129 hm5C_site_27945 DeepMRMD:1;iRNA_m5C:0.999536290073129 27946 chr19 30936083 30936083 1 + G C LUAD 30936065 + 30936045 30936085 41 CTCATGGCCAGGGGCATGGCCATGGAACATGGCTTCTTGTC CTCATGGCCAGGGGCATGGCCATGGAACATGGCTTCTTCTC < 41bp 1 0.388244509578857 1 0.82858818769455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936065 chr19:30936083 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_27508 0 0 0 0 0 exosome 1 0.500231643281271 0.3428236246109 0.999536713437458 hm5C_site_27946 DeepMRMD:0.3428236246109;iRNA_m5C:0.999536713437458 27947 chr8 97332499 97332499 1 + G T LUAD 97332495 + 97332475 97332515 41 GTCATTGGTTTCCTGGAGGCCATTGTTTGCATAAAATTTGG GTCATTGGTTTCCTGGAGGCCATTTTTTGCATAAAATTTGG < 41bp 1 0.0462849480791435 1 0.0763313174247742 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97332495 chr8:97332499 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_27509 0 0 1 0 1 Ribosome 1 0.500231644027698 1 0.999536711944604 hm5C_site_27947 DeepMRMD:1;iRNA_m5C:0.999536711944604 27948 chr2 46611659 46611659 1 + C T LUAD 46611654 + 46611634 46611674 41 AACCCTTCTTTCAGGCATGGCAAGCCGGCTGCTCGGGCCCT AACCCTTCTTTCAGGCATGGCAAGCTGGCTGCTCGGGCCCT < 41bp 1 0.250416137252471 1 0.317498385906219 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46611654 chr2:46611659 nonsynonymous SNV 0.971 3 26 hm5C_associated_SNPs_27510 0 0 1 0 1 Cytosol 1 0.500231643921057 1 0.999536712157887 hm5C_site_27948 DeepMRMD:1;iRNA_m5C:0.999536712157887 27949 chr3 37583978 37583978 1 + T C LUAD 37583980 + 37583960 37584000 41 GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGAGAGAC GGCCAGATGCCCAGGGTCCACTTTGTGCTGCTGGGAGAGAC < 41bp 1 0.298695375041663 1 0.0402573347091675 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37583980 chr3:37583978 nonsynonymous SNV 0.994 4 19 hm5C_associated_SNPs_27511 0 0 0 0 2 Nucleus 1 0.50023164392112 1 0.99953671215776 hm5C_site_27949 DeepMRMD:1;iRNA_m5C:0.99953671215776 27950 chr17 66352911 66352911 1 + G A LUAD 66352925 + 66352905 66352945 41 AAGTATGCTGAGAAAGCAACCCAGTTCATCCAGCGTGCAAG AAGTATACTGAGAAAGCAACCCAGTTCATCCAGCGTGCAAG < 41bp 1 0.29432054729319 1 0.124501168727875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARSG ENSG00000141337 CDS Human protein_coding chr17:66352925 chr17:66352911 nonsynonymous SNV 0.138 1 7 hm5C_associated_SNPs_27512 0 0 1 0 1 chromatin 1 0.500231828783743 1 0.999536342432514 hm5C_site_27950 DeepMRMD:1;iRNA_m5C:0.999536342432514 27951 chr11 126143255 126143255 1 + C T LUAD 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTTCTCCCCTGGACCTCCGGTTCA < 41bp 1 0.532746129029717 1 0.132081568241119 experiment 0.934507741940566 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143255 nonsynonymous SNV 0.042 0 20 hm5C_associated_SNPs_27513 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27951 DeepMRMD:1;iRNA_m5C:0.999536712157815 27952 chr5 167850627 167850627 1 + A G LUAD 167850633 + 167850613 167850653 41 TGCATCCAGCCTGGACTCCTCCACTTCAGCCAGCTTCACTG TGCATCCAGCCTGGGCTCCTCCACTTCAGCCAGCTTCACTG < 41bp 1 0.125186377999104 1 0.116620928049088 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167850633 chr5:167850627 nonsynonymous SNV 0.966 1 15 hm5C_associated_SNPs_27514 0 0 0 0 1 Ribosome 1 0.500231637438196 1 0.999536725123608 hm5C_site_27952 DeepMRMD:1;iRNA_m5C:0.999536725123608 27953 chr5 167850626 167850626 1 + G T LUAD 167850633 + 167850613 167850653 41 TGCATCCAGCCTGGACTCCTCCACTTCAGCCAGCTTCACTG TGCATCCAGCCTGTACTCCTCCACTTCAGCCAGCTTCACTG < 41bp 1 0.104536205320545 1 0.0760217010974884 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167850633 chr5:167850626 nonsynonymous SNV 0.965 4 14 hm5C_associated_SNPs_27515 0 0 0 0 1 Ribosome 1 0.500231643839007 1 0.999536712321985 hm5C_site_27953 DeepMRMD:1;iRNA_m5C:0.999536712321985 27954 chr10 112335124 112335124 1 + G T LUAD 112335144 + 112335124 112335164 41 GTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG TTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG < 41bp 1 0.202714663793782 1 0.110780656337738 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335144 chr10:112335124 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_27516 0 0 1 0 2 Ribosome 1 0.50023164390782 1 0.999536712184361 hm5C_site_27954 DeepMRMD:1;iRNA_m5C:0.999536712184361 27955 chr19 11114068 11114068 1 + G T LUAD 11114055 + 11114035 11114075 41 TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGT TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGTAAGAGGT < 41bp 1 0.238625755620532 1 0.212884306907654 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114055 chr19:11114068 stopgain 1.000 1 34 hm5C_associated_SNPs_27517 0 0 1 0 2 Nucleus 1 0.500231642804775 1 0.999536714390449 hm5C_site_27955 DeepMRMD:1;iRNA_m5C:0.999536714390449 27956 chr19 11114068 11114068 1 + G T LUAD 11114057 + 11114037 11114077 41 TGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGTAA TGATAGTGAAGAAAGTGGCTCAGAAGAAGAGTAAGAGGTAA < 41bp 1 0.361307605522724 1 0.455998301506042 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114057 chr19:11114068 stopgain 1.000 1 32 hm5C_associated_SNPs_27518 0 0 1 0 2 Nucleus 1 0.500231641466704 1 0.999536717066592 hm5C_site_27956 DeepMRMD:1;iRNA_m5C:0.999536717066592 27957 chr7 142458448 142458448 1 + A G LUAD 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTGGGGGCTGCAACTGTGA < 41bp 1 0.22350161775354 1 0.142895013093948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458448 nonsynonymous SNV 0.048 4 32 hm5C_associated_SNPs_27520 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_27957 DeepMRMD:1;iRNA_m5C:0.999536712157815 27958 chr7 142458448 142458448 1 + A G LUAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTGCAACTGTGAGGAGAATTC < 41bp 1 0.481274891953426 1 0.502833604812622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458448 nonsynonymous SNV 0.048 4 23 hm5C_associated_SNPs_27521 0 0 0 0 1 Cytosol 1 0.500231656085473 0.994332790374756 0.999536687829053 hm5C_site_27958 DeepMRMD:0.994332790374756;iRNA_m5C:0.999536687829053 27959 chr7 142458448 142458448 1 + A G LUAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTGCAACTGTGAGGAGAATTCTGT < 41bp 1 0.160965221833427 1 0.165374040603638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458448 nonsynonymous SNV 0.048 4 20 hm5C_associated_SNPs_27522 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_27959 DeepMRMD:1;iRNA_m5C:0.999536712157816 27960 chr7 142458448 142458448 1 + A G LUAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTGCAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.387751448009166 1 0.387707859277725 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458448 nonsynonymous SNV 0.048 4 17 hm5C_associated_SNPs_27523 0 0 0 0 1 Cytosol 1 0.500231644006715 1 0.99953671198657 hm5C_site_27960 DeepMRMD:1;iRNA_m5C:0.99953671198657 27961 chr7 142458448 142458448 1 + A G LUAD 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTGCAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.161556946126062 1 0.169284611940384 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458448 nonsynonymous SNV 0.048 4 3 hm5C_associated_SNPs_27524 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27961 DeepMRMD:1;iRNA_m5C:0.999536712157815 27962 chr1 249212000 249212000 1 + A T LUAD 249212016 + 249211996 249212036 41 AGTGAGGAGATCATCGTGTGCCGCTGGCACGATAGCAGCGT AGTGTGGAGATCATCGTGTGCCGCTGGCACGATAGCAGCGT < 41bp 1 0.383806565698644 1 0.116716414690018 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212016 chr1:249212000 nonsynonymous SNV 0.985 2 5 hm5C_associated_SNPs_27525 0 0 1 0 0 Cytosol 1 0.500231651101313 1 0.999536697797373 hm5C_site_27962 DeepMRMD:1;iRNA_m5C:0.999536697797373 27963 chr19 50912800 50912800 1 + G A LUAD 50912807 + 50912787 50912827 41 AGCTGGCCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTG AGCTGGCCAAGGAAACAGACCCCCTCCGGCGCCAGGTCCTG < 41bp 1 0.138538534259625 1 0.0105753839015961 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912807 chr19:50912800 synonymous SNV . 0 14 hm5C_associated_SNPs_27526 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_27963 DeepMRMD:1;iRNA_m5C:0.999536712157815 27964 chr19 50912800 50912800 1 + G A LUAD 50912813 + 50912793 50912833 41 CCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTGGATGGA CCAAGGAAACAGACCCCCTCCGGCGCCAGGTCCTGGATGGA < 41bp 1 0.449308751268877 1 0.721050083637238 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912813 chr19:50912800 synonymous SNV . 0 8 hm5C_associated_SNPs_27527 0 0 1 0 1 Nucleus 1 0.500231643921089 0.557899832725524 0.999536712157823 hm5C_site_27964 DeepMRMD:0.557899832725524;iRNA_m5C:0.999536712157823 27965 chr10 75557788 75557788 1 + G T LUAD 75557805 + 75557785 75557825 41 CTGGCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTA CTGTCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTA < 41bp 1 0.107737415280073 1 0.186539143323898 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557805 chr10:75557788 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_27528 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_27965 DeepMRMD:1;iRNA_m5C:0.999536712157815 27966 chr12 57569701 57569701 1 + A G LUAD 57569717 + 57569697 57569737 41 TTCAAGCCGTTCATCATTTTCTCCAACCGCCATGAAATCCG TTCAGGCCGTTCATCATTTTCTCCAACCGCCATGAAATCCG < 41bp 1 0.38643184351111 1 0.97370857000351 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57569717 chr12:57569701 nonsynonymous SNV 0.999 2 5 hm5C_associated_SNPs_27529 0 0 0 0 1 Exosome 1 0.500231643921093 0.0525828599929801 0.999536712157815 hm5C_site_27966 DeepMRMD:0.0525828599929801;iRNA_m5C:0.999536712157815 27967 chrX 69639590 69639590 1 + G A LUAD 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGAATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT < 41bp 1 0.382302708892157 1 0.18930447101593 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639590 nonsynonymous SNV 0.991 2 4 hm5C_associated_SNPs_27530 0 0 0 0 2 chromatin 1 0.500231643719481 1 0.999536712561037 hm5C_site_27967 DeepMRMD:1;iRNA_m5C:0.999536712561037 27968 chr14 93277914 93277914 1 + C T LUAD 93277898 + 93277878 93277918 41 TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCCTTAA TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCTTTAA < 41bp 1 0.510689155163437 1 0.180566161870956 experiment 0.978621689673127 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93277898 chr14:93277914 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_27531 0 0 0 0 1 chromatin 1 0.500293010960618 1 0.999413978078765 hm5C_site_27968 DeepMRMD:1;iRNA_m5C:0.999413978078765 27969 chr13 41650184 41650184 1 + C T LUAD 41650198 + 41650178 41650218 41 AGAATCCAGATGGGAGAAACCTGATGATTTCATTCCACACA AGAATCTAGATGGGAGAAACCTGATGATTTCATTCCACACA < 41bp 1 0.63140879321281 1 0.0783772766590118 experiment 0.737182413574379 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WBP4 ENSG00000120688 CDS Human protein_coding chr13:41650198 chr13:41650184 synonymous SNV . 0 7 hm5C_associated_SNPs_27532 0 0 0 0 1 Cytosol 1 0.500216712551159 1 0.999566574897682 hm5C_site_27969 DeepMRMD:1;iRNA_m5C:0.999566574897682 27970 chr7 66773927 66773927 1 + G C LUAD 66773926 + 66773906 66773946 41 ATACATCCTTTTGTAGGACTCGGGGGACTATCCTCTGACAG ATACATCCTTTTGTAGGACTCCGGGGACTATCCTCTGACAG < 41bp 1 0.680213185514792 1 0.905108094215393 experiment 0.639573628970416 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control STAG3L4 ENSG00000106610 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:66773926 chr7:66773927 . . 0 22 hm5C_associated_SNPs_27533 0 0 1 0 1 unknown 1 0.50023164773997 0.189783811569214 0.999536704520059 hm5C_site_27970 DeepMRMD:0.189783811569214;iRNA_m5C:0.999536704520059 27971 chr1 162745481 162745481 1 + C A LUAD 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTCTTAAGGAGATAAAGATCATGTCTCGGCTAAAGGACCC < 41bp 1 0.251606257576567 1 0.111975371837616 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745481 synonymous SNV . 0 33 hm5C_associated_SNPs_27534 0 0 1 0 1 nucleolus 1 0.500231643884403 1 0.999536712231193 hm5C_site_27971 DeepMRMD:1;iRNA_m5C:0.999536712231193 27972 chr19 55817713 55817713 1 + C T LUAD 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC GTCTTCCAAAAGCCCGTCTGCTTCCAGGTGGACATCAGCTC < 41bp 1 0.116275690604295 1 0.133496940135956 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817713 nonsynonymous SNV 0.992 3 19 hm5C_associated_SNPs_27535 0 0 1 0 1 chromatin 1 0.500231643921253 1 0.999536712157494 hm5C_site_27972 DeepMRMD:1;iRNA_m5C:0.999536712157494 27973 chr19 36227603 36227603 1 + G T LUAD 36227620 + 36227600 36227640 41 CGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG CGATCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG < 41bp 1 0.00779612260214917 1 0.13691446185112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227620 chr19:36227603 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_27537 0 0 1 0 1 chromatin 1 0.500231641123388 1 0.999536717753224 hm5C_site_27973 DeepMRMD:1;iRNA_m5C:0.999536717753224 27974 chr19 47763903 47763903 1 + G T LUAD 47763890 + 47763870 47763910 41 GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGG GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCATCAAGGGG < 41bp 1 0.204971691634992 1 0.229881227016449 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763890 chr19:47763903 nonsynonymous SNV 0.994 1 34 hm5C_associated_SNPs_27538 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27974 DeepMRMD:1;iRNA_m5C:0.999536712157815 27975 chr19 47763903 47763903 1 + G T LUAD 47763892 + 47763872 47763912 41 TCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGG TCTCCTGGGACCCCTCGGCCCCCAGGGGCCATCAAGGGGGG < 41bp 1 0.384829310478233 1 0.385050773620605 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763892 chr19:47763903 nonsynonymous SNV 0.994 1 32 hm5C_associated_SNPs_27540 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_27975 DeepMRMD:1;iRNA_m5C:0.999536712157815 27976 chr19 47763903 47763903 1 + G T LUAD 47763893 + 47763873 47763913 41 CTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGC CTCCTGGGACCCCTCGGCCCCCAGGGGCCATCAAGGGGGGC < 41bp 1 0.513461809141665 1 0.698006331920624 experiment 0.97307638171667 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763893 chr19:47763903 nonsynonymous SNV 0.994 1 31 hm5C_associated_SNPs_27541 0 0 1 0 1 chromatin 1 0.500231643921092 0.603987336158752 0.999536712157815 hm5C_site_27976 DeepMRMD:0.603987336158752;iRNA_m5C:0.999536712157815 27977 chr19 47763903 47763903 1 + G T LUAD 47763913 + 47763893 47763933 41 CCAGGGGCCAGCAAGGGGGGCCGGACTCCTCCACAGCAGGG CCAGGGGCCATCAAGGGGGGCCGGACTCCTCCACAGCAGGG < 41bp 1 0.471739050377071 1 0.42859473824501 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763913 chr19:47763903 nonsynonymous SNV 0.994 1 11 hm5C_associated_SNPs_27542 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_27977 DeepMRMD:1;iRNA_m5C:0.999536712157815 27978 chr1 150280583 150280583 1 + G T LUAD 150280582 + 150280562 150280602 41 AAAGCTATGAAAGGTGCCGGCGGATCTACAACATGGAAATG AAAGCTATGAAAGGTGCCGGCTGATCTACAACATGGAAATG < 41bp 1 0.367746289769873 1 0.138836532831192 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280582 chr1:150280583 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_27544 0 0 1 0 0 Cytosol 1 0.500231643920193 1 0.999536712159614 hm5C_site_27978 DeepMRMD:1;iRNA_m5C:0.999536712159614 27979 chr7 44801092 44801092 1 + G T LUAD 44801091 + 44801071 44801111 41 CGGCTGACCTTCCCTGTGCGCGATGGGGTGGTCCTGGAGCC CGGCTGACCTTCCCTGTGCGCTATGGGGTGGTCCTGGAGCC < 41bp 1 0.30323089433131 1 0.384092807769775 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801091 chr7:44801092 nonsynonymous SNV 0.960 4 22 hm5C_associated_SNPs_27545 0 0 1 0 1 Cytosol 1 0.500231643921095 1 0.999536712157809 hm5C_site_27979 DeepMRMD:1;iRNA_m5C:0.999536712157809 27980 chr19 8321907 8321907 1 + G A LUAD 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTTCTCCTACAGTGCCAACCTGCTACGCATTGGCTCTCTG < 41bp 1 0.392665346043536 1 0.309657394886017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321907 synonymous SNV . 0 26 hm5C_associated_SNPs_27546 0 0 0 0 2 chromatin 1 0.500231481779621 1 0.999537036440757 hm5C_site_27980 DeepMRMD:1;iRNA_m5C:0.999537036440757 27981 chr6 26156692 26156692 1 + G C LUAD 26156707 + 26156687 26156727 41 GGCCCGCAAGTCTGCAGGTGCGGCCAAGCGCAAAGCGTCTG GGCCCCCAAGTCTGCAGGTGCGGCCAAGCGCAAAGCGTCTG < 41bp 1 0.534835585986398 1 0.144889771938324 experiment 0.930328828027204 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26156707 chr6:26156692 nonsynonymous SNV 0.995 1 6 hm5C_associated_SNPs_27547 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27981 DeepMRMD:1;iRNA_m5C:0.999536712157815 27982 chr7 142459794 142459794 1 + T A LUAD 142459781 + 142459761 142459801 41 CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCAT CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGACCACCAT < 41bp 1 0.67071865915264 1 0.864444494247437 experiment 0.658562681694721 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459781 chr7:142459794 nonsynonymous SNV 0.004 1 34 hm5C_associated_SNPs_27549 0 0 0 0 1 Cytosol 1 0.500231643921093 0.271111011505126 0.999536712157814 hm5C_site_27982 DeepMRMD:0.271111011505126;iRNA_m5C:0.999536712157814 27983 chr7 142459794 142459794 1 + T A LUAD 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTGCAGTAATCAACGCCCGCGTGACCACCATCTC < 41bp 1 0.672993872243951 1 0.337846755981445 experiment 0.654012255512097 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459794 nonsynonymous SNV 0.004 1 31 hm5C_associated_SNPs_27550 0 0 0 0 1 Cytosol 1 0.50023164377204 1 0.99953671245592 hm5C_site_27983 DeepMRMD:1;iRNA_m5C:0.99953671245592 27984 chr7 142459794 142459794 1 + T A LUAD 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTGCAGTAATCAACGCCCGCGTGACCACCATCTCTC < 41bp 1 0.506062015885189 1 0.12872126698494 experiment 0.987875968229622 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459794 nonsynonymous SNV 0.004 1 29 hm5C_associated_SNPs_27551 0 0 0 0 1 Cytosol 1 0.500231646011751 1 0.999536707976499 hm5C_site_27984 DeepMRMD:1;iRNA_m5C:0.999536707976499 27985 chr7 142459794 142459794 1 + T A LUAD 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTGCAGTAATCAACGCCCGCGTGACCACCATCTCTCT < 41bp 1 0.548591282723148 1 0.254048824310303 experiment 0.902817434553703 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459794 nonsynonymous SNV 0.004 1 28 hm5C_associated_SNPs_27552 0 0 0 0 1 Cytosol 1 0.500231726276295 1 0.99953654744741 hm5C_site_27985 DeepMRMD:1;iRNA_m5C:0.99953654744741 27986 chr7 142459794 142459794 1 + T A LUAD 142459795 + 142459775 142459815 41 AGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG AGTAATCAACGCCCGCGTGACCACCATCTCTCTGCCCACCG < 41bp 1 0.328448018231018 1 0.091395229101181 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459795 chr7:142459794 nonsynonymous SNV 0.004 1 20 hm5C_associated_SNPs_27555 0 0 0 0 1 Cytosol 1 0.5002318494852 1 0.999536301029601 hm5C_site_27986 DeepMRMD:1;iRNA_m5C:0.999536301029601 27987 chr7 142459794 142459794 1 + T A LUAD 142459798 + 142459778 142459818 41 AATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCC AATCAACGCCCGCGTGACCACCATCTCTCTGCCCACCGCCC < 41bp 1 0.184945071848268 1 0.0541442334651947 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459798 chr7:142459794 nonsynonymous SNV 0.004 1 17 hm5C_associated_SNPs_27556 0 0 0 0 1 Cytosol 1 0.500231643920722 1 0.999536712158556 hm5C_site_27987 DeepMRMD:1;iRNA_m5C:0.999536712158556 27988 chr7 142459794 142459794 1 + T A LUAD 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACGCCCGCGTGACCACCATCTCTCTGCCCACCGCCCC < 41bp 1 0.427115449189763 1 0.344746172428131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459794 nonsynonymous SNV 0.004 1 16 hm5C_associated_SNPs_27557 0 0 0 0 1 Cytosol 1 0.500231628149788 1 0.999536743700424 hm5C_site_27988 DeepMRMD:1;iRNA_m5C:0.999536743700424 27989 chr7 142459794 142459794 1 + T A LUAD 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCCCGCGTGACCACCATCTCTCTGCCCACCGCCCCTCC < 41bp 1 0.448944146941247 1 0.523673415184021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459794 nonsynonymous SNV 0.004 1 13 hm5C_associated_SNPs_27558 0 0 0 0 1 Cytosol 1 0.500231643921087 0.952653169631958 0.999536712157826 hm5C_site_27989 DeepMRMD:0.952653169631958;iRNA_m5C:0.999536712157826 27990 chr7 142459794 142459794 1 + T A LUAD 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCCCGCGTGACCACCATCTCTCTGCCCACCGCCCCTCCAG < 41bp 1 0.684175750452794 1 0.527535200119019 experiment 0.631648499094412 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459794 nonsynonymous SNV 0.004 1 11 hm5C_associated_SNPs_27559 0 0 0 0 1 Cytosol 1 0.500231616479083 0.944929599761962 0.999536767041833 hm5C_site_27990 DeepMRMD:0.944929599761962;iRNA_m5C:0.999536767041833 27991 chr7 142459794 142459794 1 + T A LUAD 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CCCGCGTGACCACCATCTCTCTGCCCACCGCCCCTCCAGCC < 41bp 1 0.610350815553031 1 0.589830040931702 experiment 0.779298368893938 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459794 nonsynonymous SNV 0.004 1 9 hm5C_associated_SNPs_27560 0 0 0 0 1 Cytosol 1 0.500231643920914 0.820339918136596 0.999536712158172 hm5C_site_27991 DeepMRMD:0.820339918136596;iRNA_m5C:0.999536712158172 27992 chr7 142459794 142459794 1 + T A LUAD 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCGTGACCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT < 41bp 1 0.173754682788446 1 0.0375349223613739 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459794 nonsynonymous SNV 0.004 1 6 hm5C_associated_SNPs_27561 0 0 0 0 1 Cytosol 1 0.500231664301686 1 0.999536671396628 hm5C_site_27992 DeepMRMD:1;iRNA_m5C:0.999536671396628 27993 chr7 142459794 142459794 1 + T A LUAD 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CGTGACCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG < 41bp 1 0.220790983799998 1 0.0482375919818878 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459794 nonsynonymous SNV 0.004 1 5 hm5C_associated_SNPs_27562 0 0 0 0 1 Cytosol 1 0.500231643921652 1 0.999536712156695 hm5C_site_27993 DeepMRMD:1;iRNA_m5C:0.999536712156695 27994 chr7 142459794 142459794 1 + T A LUAD 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG GTGACCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG < 41bp 1 0.679103812099875 1 0.0437188744544983 experiment 0.64179237580025 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459794 nonsynonymous SNV 0.004 1 4 hm5C_associated_SNPs_27563 0 0 0 0 1 Cytosol 1 0.500231644398425 1 0.999536711203149 hm5C_site_27994 DeepMRMD:1;iRNA_m5C:0.999536711203149 27995 chr7 142459794 142459794 1 + T A LUAD 142459813 + 142459793 142459833 41 GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA GACCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA < 41bp 1 0.274242263659063 1 0.133302837610245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459813 chr7:142459794 nonsynonymous SNV 0.004 1 2 hm5C_associated_SNPs_27564 0 0 0 0 1 Cytosol 1 0.50023164394617 1 0.999536712107661 hm5C_site_27995 DeepMRMD:1;iRNA_m5C:0.999536712107661 27996 chr7 142459794 142459794 1 + T A LUAD 142459814 + 142459794 142459834 41 TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC ACCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC < 41bp 1 0.526026416675829 1 0.141821354627609 experiment 0.947947166648342 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459814 chr7:142459794 nonsynonymous SNV 0.004 1 1 hm5C_associated_SNPs_27565 0 0 0 0 1 Cytosol 1 0.500231287888805 1 0.99953742422239 hm5C_site_27996 DeepMRMD:1;iRNA_m5C:0.99953742422239 27997 chr1 222833533 222833533 1 + A T LUAD 222833549 + 222833529 222833569 41 CCAGAATGGCTCTTTTGGCCCATCCCCTGTGAGTGGTGGAG CCAGTATGGCTCTTTTGGCCCATCCCCTGTGAGTGGTGGAG < 41bp 1 0.084746260768132 1 0.0762242674827576 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222833549 chr1:222833533 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_27566 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_27997 DeepMRMD:1;iRNA_m5C:0.999536712157815 27998 chr2 182786887 182786887 1 + A G LUAD 182786886 + 182786866 182786906 41 AGTGGGCAAATCCAAAACCCCATTAGTGGCAAGGAAGAAAG AGTGGGCAAATCCAAAACCCCGTTAGTGGCAAGGAAGAAAG < 41bp 1 0.372019337171559 1 0.0997596383094788 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182786886 chr2:182786887 synonymous SNV . 0 22 hm5C_associated_SNPs_27567 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_27998 DeepMRMD:1;iRNA_m5C:0.999536712157815 27999 chr7 142459714 142459714 1 + C G LUAD 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCGCC < 41bp 1 0.339704423601011 1 0.323773682117462 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459714 nonsynonymous SNV 0.015 5 39 hm5C_associated_SNPs_27569 0 0 0 0 1 Cytosol 1 0.500231677707292 1 0.999536644585416 hm5C_site_27999 DeepMRMD:1;iRNA_m5C:0.999536644585416 28000 chr7 142459714 142459714 1 + C G LUAD 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATCCGCCACCGCCAATACGA < 41bp 1 0.331445340450307 1 0.068085104227066 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459714 nonsynonymous SNV 0.015 5 32 hm5C_associated_SNPs_27570 0 0 0 0 1 Cytosol 1 0.500231763232751 1 0.999536473534498 hm5C_site_28000 DeepMRMD:1;iRNA_m5C:0.999536473534498 28001 chr7 142459714 142459714 1 + C G LUAD 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATCCGCCACCGCCAATACGACAG < 41bp 1 0.300221512936103 1 0.389840543270111 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459714 nonsynonymous SNV 0.015 5 29 hm5C_associated_SNPs_27571 0 0 0 0 1 Cytosol 1 0.500231643548739 1 0.999536712902522 hm5C_site_28001 DeepMRMD:1;iRNA_m5C:0.999536712902522 28002 chr7 142459714 142459714 1 + C G LUAD 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATCCGCCACCGCCAATACGACAGGAA < 41bp 1 0.151577986212442 1 0.104823619127274 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459714 nonsynonymous SNV 0.015 5 26 hm5C_associated_SNPs_27573 0 0 0 0 1 Cytosol 1 0.500231644160517 1 0.999536711678965 hm5C_site_28002 DeepMRMD:1;iRNA_m5C:0.999536711678965 28003 chr7 142459714 142459714 1 + C G LUAD 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATCCGCCACCGCCAATACGACAGGAAG < 41bp 1 0.390499284911803 1 0.18408465385437 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459714 nonsynonymous SNV 0.015 5 25 hm5C_associated_SNPs_27574 0 0 0 0 1 Cytosol 1 0.500231644082236 1 0.999536711835528 hm5C_site_28003 DeepMRMD:1;iRNA_m5C:0.999536711835528 28004 chr7 142459714 142459714 1 + C G LUAD 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATCCGCCACCGCCAATACGACAGGAAGAC < 41bp 1 0.174785847574192 1 0.251794248819351 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459714 nonsynonymous SNV 0.015 5 23 hm5C_associated_SNPs_27575 0 0 0 0 1 Cytosol 1 0.500231648084467 1 0.999536703831066 hm5C_site_28004 DeepMRMD:1;iRNA_m5C:0.999536703831066 28005 chr7 142459714 142459714 1 + C G LUAD 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATCCGCCACCGCCAATACGACAGGAAGACTCT < 41bp 1 0.245841679518421 1 0.204381227493286 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459714 nonsynonymous SNV 0.015 5 20 hm5C_associated_SNPs_27577 0 0 0 0 1 Cytosol 1 0.500231842111523 1 0.999536315776953 hm5C_site_28005 DeepMRMD:1;iRNA_m5C:0.999536315776953 28006 chr7 142459714 142459714 1 + C G LUAD 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATCCGCCACCGCCAATACGACAGGAAGACTCTG < 41bp 1 0.425420956804774 1 0.102918386459351 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459714 nonsynonymous SNV 0.015 5 19 hm5C_associated_SNPs_27578 0 0 0 0 1 Cytosol 1 0.500231643882855 1 0.999536712234289 hm5C_site_28006 DeepMRMD:1;iRNA_m5C:0.999536712234289 28007 chr7 142459714 142459714 1 + C G LUAD 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCGCCAATACGACAGGAAGACTCTGAACAATGACATCATGT < 41bp 1 0.518538485386688 1 0.170661956071854 experiment 0.962923029226623 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459714 nonsynonymous SNV 0.015 5 3 hm5C_associated_SNPs_27579 0 0 0 0 1 Cytosol 1 0.500228247832063 1 0.999543504335874 hm5C_site_28007 DeepMRMD:1;iRNA_m5C:0.999543504335874 28008 chr1 39799550 39799550 1 + G T LUAD 39799556 + 39799536 39799576 41 TCAACTCTTGGCTTGGTGGACGTTGCTGACCAGCCAGAACT TCAACTCTTGGCTTTGTGGACGTTGCTGACCAGCCAGAACT < 41bp 1 0.0448702107492992 1 0.0954255163669586 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39799556 chr1:39799550 nonsynonymous SNV 0.995 2 15 hm5C_associated_SNPs_27580 0 0 0 0 0 Endoplasmic reticulum 1 0.500231659819258 1 0.999536680361484 hm5C_site_28008 DeepMRMD:1;iRNA_m5C:0.999536680361484 28009 chrX 135593856 135593856 1 + C A LUAD 135593870 + 135593850 135593890 41 AATATGCAGATGAAAAGGGGCTTGAAGCTGCTGATAAAAAG AATATGAAGATGAAAAGGGGCTTGAAGCTGCTGATAAAAAG < 41bp 1 0.397989752275379 1 0.185291230678558 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593870 chrX:135593856 nonsynonymous SNV 0.045 1 7 hm5C_associated_SNPs_27581 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28009 DeepMRMD:1;iRNA_m5C:0.999536712157815 28010 chr9 101765843 101765843 1 + G A LUAD 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCGGGGGACCAACCCTCTCTATGTCCACGAAGAACCCAG < 41bp 1 0.303144626685665 1 0.120808005332947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765843 nonsynonymous SNV 0.000 1 32 hm5C_associated_SNPs_27582 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_28010 DeepMRMD:1;iRNA_m5C:0.999536712157815 28011 chr6 35423809 35423809 1 + G T LUAD 35423791 + 35423771 35423811 41 AGTCTATGTAGGGGGCTGGGCCTGGGGGGCAGGAGGTTGAA AGTCTATGTAGGGGGCTGGGCCTGGGGGGCAGGAGGTTTAA < 41bp 1 0.320182530228514 1 0.393773257732391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCE ENSG00000112039 CDS Human protein_coding chr6:35423791 chr6:35423809 nonsynonymous SNV 0.869 2 39 hm5C_associated_SNPs_27583 0 0 1 0 0 Ribosome 1 0.500231643932839 1 0.999536712134322 hm5C_site_28011 DeepMRMD:1;iRNA_m5C:0.999536712134322 28012 chr6 35423809 35423809 1 + G T LUAD 35423816 + 35423796 35423836 41 GGGGCAGGAGGTTGAAATCCCCCCAGGCTCCAGACCCTGAA GGGGCAGGAGGTTTAAATCCCCCCAGGCTCCAGACCCTGAA < 41bp 1 0.582071762163411 1 0.243427604436874 experiment 0.835856475673179 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCE ENSG00000112039 CDS Human protein_coding chr6:35423816 chr6:35423809 nonsynonymous SNV 0.869 2 14 hm5C_associated_SNPs_27585 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28012 DeepMRMD:1;iRNA_m5C:0.999536712157815 28013 chr6 35423809 35423809 1 + G T LUAD 35423818 + 35423798 35423838 41 GGCAGGAGGTTGAAATCCCCCCAGGCTCCAGACCCTGAAGA GGCAGGAGGTTTAAATCCCCCCAGGCTCCAGACCCTGAAGA < 41bp 1 0.415262952912898 1 0.809956669807434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCE ENSG00000112039 CDS Human protein_coding chr6:35423818 chr6:35423809 nonsynonymous SNV 0.869 2 12 hm5C_associated_SNPs_27586 0 0 1 0 0 Ribosome 1 0.500231643921092 0.380086660385132 0.999536712157815 hm5C_site_28013 DeepMRMD:0.380086660385132;iRNA_m5C:0.999536712157815 28014 chr6 35423809 35423809 1 + G T LUAD 35423819 + 35423799 35423839 41 GCAGGAGGTTGAAATCCCCCCAGGCTCCAGACCCTGAAGAA GCAGGAGGTTTAAATCCCCCCAGGCTCCAGACCCTGAAGAA < 41bp 1 0.498250309012613 1 0.697048783302307 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCE ENSG00000112039 CDS Human protein_coding chr6:35423819 chr6:35423809 nonsynonymous SNV 0.869 2 11 hm5C_associated_SNPs_27587 0 0 1 0 0 Ribosome 1 0.500231643921093 0.605902433395386 0.999536712157814 hm5C_site_28014 DeepMRMD:0.605902433395386;iRNA_m5C:0.999536712157814 28015 chr5 139892992 139892992 1 + G T LUAD 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTGTGAATGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG < 41bp 1 0.160107811174976 1 0.44102668762207 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139892992 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_27588 0 0 1 0 2 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_28015 DeepMRMD:1;iRNA_m5C:0.999536712157818 28016 chr22 39125579 39125579 1 + G T LUAD 39125568 + 39125548 39125588 41 ACGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT ACGAAACGAGACGAGGGGGGCCCGTCTGGTGTGCCAGCAGT < 41bp 1 0.147314324841759 1 0.174940228462219 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125568 chr22:39125579 nonsynonymous SNV 0.093 0 32 hm5C_associated_SNPs_27589 0 0 1 0 1 Ribosome 1 0.50023164392441 1 0.999536712151179 hm5C_site_28016 DeepMRMD:1;iRNA_m5C:0.999536712151179 28017 chr22 39125579 39125579 1 + G T LUAD 39125569 + 39125549 39125589 41 CGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA CGAAACGAGACGAGGGGGGCCCGTCTGGTGTGCCAGCAGTA < 41bp 1 0.0340595695009849 1 0.317718088626862 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125569 chr22:39125579 nonsynonymous SNV 0.093 0 31 hm5C_associated_SNPs_27590 0 0 1 0 1 Ribosome 1 0.500231643982623 1 0.999536712034753 hm5C_site_28017 DeepMRMD:1;iRNA_m5C:0.999536712034753 28018 chr22 39125579 39125579 1 + G T LUAD 39125570 + 39125550 39125590 41 GAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAG GAAACGAGACGAGGGGGGCCCGTCTGGTGTGCCAGCAGTAG < 41bp 1 0.148049134521817 1 0.265359729528427 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125570 chr22:39125579 nonsynonymous SNV 0.093 0 30 hm5C_associated_SNPs_27591 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28018 DeepMRMD:1;iRNA_m5C:0.999536712157815 28019 chr7 98528436 98528436 1 + A G LUAD 98528424 + 98528404 98528444 41 AGACATTCCTGAAAGCACTTCTCTTTGTCATGATGGACTTA AGACATTCCTGAAAGCACTTCTCTTTGTCATGGTGGACTTA < 41bp 1 0.0509407775892549 1 0.0771685540676117 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528424 chr7:98528436 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_27592 0 0 1 0 1 Nucleus 1 0.500231643933564 1 0.999536712132872 hm5C_site_28019 DeepMRMD:1;iRNA_m5C:0.999536712132872 28020 chr7 98528436 98528436 1 + A G LUAD 98528441 + 98528421 98528461 41 CTTCTCTTTGTCATGATGGACTTAACTGGAGAGGTAGGTGA CTTCTCTTTGTCATGGTGGACTTAACTGGAGAGGTAGGTGA < 41bp 1 0.116977729188214 1 0.110246509313583 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528441 chr7:98528436 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_27593 0 0 1 0 1 Nucleus 1 0.500231639302633 1 0.999536721394734 hm5C_site_28020 DeepMRMD:1;iRNA_m5C:0.999536721394734 28021 chrX 148628335 148628335 1 + G T LUAD 148628325 + 148628305 148628345 41 ACTTTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT ACTTTGCAATGCCCCGAAGACTTAACTCCCTATGAGGTTGT < 41bp 1 0.349840642717895 1 0.126442968845367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXorf40A ENSG00000197620 CDS Human protein_coding chrX:148628325 chrX:148628335 nonsynonymous SNV 0.001 1 31 hm5C_associated_SNPs_27594 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28021 DeepMRMD:1;iRNA_m5C:0.999536712157815 28022 chrX 129149565 129149565 1 + T A LUAD 129149555 + 129149535 129149575 41 GACTGGGACCCTGGCACTGTCTGTTCAGCCTAGCGGTGGGG GACTGGGACCCTGGCACTGTCTGTTCAGCCAAGCGGTGGGG < 41bp 1 0.217843525167687 1 0.0930314958095551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129149555 chrX:129149565 synonymous SNV . 0 31 hm5C_associated_SNPs_27595 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28022 DeepMRMD:1;iRNA_m5C:0.999536712157815 28023 chrX 73046552 73046552 1 + C G LUAD 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA CGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA < 41bp 1 0.263305542097294 1 0.351792871952057 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046552 . . 0 1 hm5C_associated_SNPs_27596 0 0 1 0 0 unknown 1 0.500231643909438 1 0.999536712181124 hm5C_site_28023 DeepMRMD:1;iRNA_m5C:0.999536712181124 28024 chrX 73046552 73046552 1 + C G LUAD 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CCGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG < 41bp 1 0.269405033648033 1 0.232523173093796 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046552 . . 0 2 hm5C_associated_SNPs_27597 0 0 1 0 0 unknown 1 0.500231643920763 1 0.999536712158474 hm5C_site_28024 DeepMRMD:1;iRNA_m5C:0.999536712158474 28025 chrX 73046552 73046552 1 + C G LUAD 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCCGAATCTGGAGGCCCATGACCCAGAACCCAGGAA < 41bp 1 0.0527130717358377 1 0.102169454097748 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046552 . . 0 8 hm5C_associated_SNPs_27598 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28025 DeepMRMD:1;iRNA_m5C:0.999536712157815 28026 chr7 55259439 55259439 1 + T G LUAD 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTCGCGTGGTGCACCGCGA < 41bp 1 0.0849398682395569 1 0.273907214403152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259439 nonsynonymous SNV 0.998 2 28 hm5C_associated_SNPs_27600 1 0 1 0 1 Nucleus 1 0.50023164903581 1 0.999536701928381 hm5C_site_28026 DeepMRMD:1;iRNA_m5C:0.999536701928381 not specified not specified 28027 chr22 46681155 46681155 1 + G C LUAD 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCCCTGAC < 41bp 1 0.123035471625612 1 0.360322624444962 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681155 synonymous SNV . 0 36 hm5C_associated_SNPs_27601 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28027 DeepMRMD:1;iRNA_m5C:0.999536712157815 28028 chr16 30975431 30975431 1 + G T LUAD 30975417 + 30975397 30975437 41 CCTGCTCTGTCGCTCTAGGCCGAATCCCGCCGCCGCTCTTC CCTGCTCTGTCGCTCTAGGCCGAATCCCGCCGCCTCTCTTC < 41bp 1 0.230003107606393 1 0.258467882871628 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30975417 chr16:30975431 nonsynonymous SNV 0.995 3 35 hm5C_associated_SNPs_27602 0 0 1 0 1 Cytosol 1 0.500231643919441 1 0.999536712161119 hm5C_site_28028 DeepMRMD:1;iRNA_m5C:0.999536712161119 28029 chr10 118306841 118306841 1 + A T LUAD 118306831 + 118306811 118306851 41 GAAGTTTGCTACGAAAGACTCGGCTGCTTCAGTGATGACTC GAAGTTTGCTACGAAAGACTCGGCTGCTTCTGTGATGACTC < 41bp 1 0.633569257793254 1 0.278895437717438 experiment 0.732861484413492 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306831 chr10:118306841 nonsynonymous SNV 0.979 4 31 hm5C_associated_SNPs_27603 0 0 0 0 1 unknown 1 0.500228550043863 1 0.999542899912273 hm5C_site_28029 DeepMRMD:1;iRNA_m5C:0.999542899912273 28030 chr10 118306841 118306841 1 + A T LUAD 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCTGTGATGACTCCCCATGGTCAGGAATTAC < 41bp 1 0.325793388152732 1 0.0270360708236694 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306841 nonsynonymous SNV 0.979 4 13 hm5C_associated_SNPs_27604 0 0 0 0 1 unknown 1 0.500231638677059 1 0.999536722645882 hm5C_site_28030 DeepMRMD:1;iRNA_m5C:0.999536722645882 28031 chr10 118306841 118306841 1 + A T LUAD 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCTGTGATGACTCCCCATGGTCAGGAATTACGGAA < 41bp 1 0.285007419252101 1 0.221290439367294 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306841 nonsynonymous SNV 0.979 4 9 hm5C_associated_SNPs_27606 0 0 0 0 1 unknown 1 0.500231643802515 1 0.99953671239497 hm5C_site_28031 DeepMRMD:1;iRNA_m5C:0.99953671239497 28032 chr10 118306841 118306841 1 + A T LUAD 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCTGTGATGACTCCCCATGGTCAGGAATTACGGAAA < 41bp 1 0.565527869378725 1 0.599889874458313 experiment 0.868944261242551 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306841 nonsynonymous SNV 0.979 4 8 hm5C_associated_SNPs_27607 0 0 0 0 1 unknown 1 0.500231643921092 0.800220251083374 0.999536712157815 hm5C_site_28032 DeepMRMD:0.800220251083374;iRNA_m5C:0.999536712157815 28033 chrX 107821200 107821200 1 + G T LUAD 107821198 + 107821178 107821218 41 TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGG TTAGGGCCCTCCTGGTCCACCATGACTTCCAGGACCTAAGG < 41bp 1 0.201758804682339 1 0.0787173211574554 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821198 chrX:107821200 stopgain 1.000 1 23 hm5C_associated_SNPs_27608 0 0 1 0 2 Ribosome 1 0.500231643921101 1 0.999536712157797 hm5C_site_28033 DeepMRMD:1;iRNA_m5C:0.999536712157797 28034 chrX 107821200 107821200 1 + G T LUAD 107821203 + 107821183 107821223 41 GCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT GCCCTCCTGGTCCACCATGACTTCCAGGACCTAAGGTAATT < 41bp 1 0.0492151931827726 1 0.0621078014373779 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821203 chrX:107821200 stopgain 1.000 1 18 hm5C_associated_SNPs_27609 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28034 DeepMRMD:1;iRNA_m5C:0.999536712157815 28035 chr11 43908168 43908168 1 + G T LUAD 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTTTATGAAAT < 41bp 1 0.467760412387878 1 0.452737003564835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908168 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_27610 0 0 1 4 3 Ribosome 1 0.500231551889051 1 0.999536896221897 hm5C_site_28035 DeepMRMD:1;iRNA_m5C:0.999536896221897 28036 chr7 91714919 91714919 1 + A G LUAD 91714906 + 91714886 91714926 41 CCATTCTATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGA CCATTCTATTCAGCAGGTTTCAGAACCTTGGCTGGAAGAGA < 41bp 1 0.347071633968542 1 0.757543206214905 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714906 chr7:91714919 synonymous SNV . 0 34 hm5C_associated_SNPs_27611 0 0 1 0 1 Nucleus 1 0.500231643921092 0.48491358757019 0.999536712157815 hm5C_site_28036 DeepMRMD:0.48491358757019;iRNA_m5C:0.999536712157815 28037 chr7 91714919 91714919 1 + A G LUAD 91714912 + 91714892 91714932 41 TATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAG TATTCAGCAGGTTTCAGAACCTTGGCTGGAAGAGAGAAAAG < 41bp 1 0.172972685047759 1 0.0967861711978912 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714912 chr7:91714919 synonymous SNV . 0 28 hm5C_associated_SNPs_27612 0 0 1 0 1 Nucleus 1 0.50023164223617 1 0.99953671552766 hm5C_site_28037 DeepMRMD:1;iRNA_m5C:0.99953671552766 28038 chr7 91714919 91714919 1 + A G LUAD 91714917 + 91714897 91714937 41 AGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAGCTTAC AGCAGGTTTCAGAACCTTGGCTGGAAGAGAGAAAAGCTTAC < 41bp 1 0.49981155868339 1 0.342662781476974 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714917 chr7:91714919 synonymous SNV . 0 23 hm5C_associated_SNPs_27613 0 0 1 0 1 Nucleus 1 0.500231643921117 1 0.999536712157765 hm5C_site_28038 DeepMRMD:1;iRNA_m5C:0.999536712157765 28039 chr22 44332968 44332968 1 + C T LUAD 44332984 + 44332964 44333004 41 CATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC CATCTTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC < 41bp 1 0.608829055137804 1 0.114076793193817 experiment 0.782341889724391 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332984 chr22:44332968 synonymous SNV . 0 5 hm5C_associated_SNPs_27614 0 0 1 0 1 cytosol 1 0.50023164516157 1 0.999536709676859 hm5C_site_28039 DeepMRMD:1;iRNA_m5C:0.999536709676859 28040 chr11 67018137 67018137 1 + A G LUAD 67018125 + 67018105 67018145 41 CAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGG CAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAGTGGCCGGG < 41bp 1 0.399175692926367 1 0.298158049583435 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67018125 chr11:67018137 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_27615 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28040 DeepMRMD:1;iRNA_m5C:0.999536712157815 28041 chr7 128491313 128491313 1 + C A LUAD 128491320 + 128491300 128491340 41 TTCTATGTGGATGCCATCAACAGCCGCCATGTCAGTGCCTA TTCTATGTGGATGACATCAACAGCCGCCATGTCAGTGCCTA < 41bp 1 0.328270222479229 1 0.74024498462677 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128491320 chr7:128491313 nonsynonymous SNV 0.995 3 14 hm5C_associated_SNPs_27616 0 0 1 0 1 chromatin 1 0.50023164392113 0.51951003074646 0.99953671215774 hm5C_site_28041 DeepMRMD:0.51951003074646;iRNA_m5C:0.99953671215774 28042 chrX 107930822 107930822 1 + A G LUAD 107930815 + 107930795 107930835 41 GGATTTCTTATTACACGCCACAGCCAGACAACGGATGCACC GGATTTCTTATTACACGCCACAGCCAGGCAACGGATGCACC < 41bp 1 0.0764133091045384 1 0.0766933262348175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107930815 chrX:107930822 nonsynonymous SNV 0.997 3 28 hm5C_associated_SNPs_27617 0 0 0 0 0 Ribosome 1 0.500231643132014 1 0.999536713735972 hm5C_site_28042 DeepMRMD:1;iRNA_m5C:0.999536713735972 28043 chr14 102502947 102502947 1 + G T LUAD 102502965 + 102502945 102502985 41 GTGCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGT GTTCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGT < 41bp 1 0.0429143885530687 1 0.0332762897014618 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502965 chr14:102502947 nonsynonymous SNV 0.674 1 3 hm5C_associated_SNPs_27618 0 0 1 0 1 Cytosol 1 0.500231644334576 1 0.999536711330847 hm5C_site_28043 DeepMRMD:1;iRNA_m5C:0.999536711330847 28044 chr14 102502947 102502947 1 + G T LUAD 102502967 + 102502947 102502987 41 GCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGTGT TCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGTGT < 41bp 1 0.0095698430143396 1 0.0272918939590454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502967 chr14:102502947 nonsynonymous SNV 0.674 1 1 hm5C_associated_SNPs_27619 0 0 1 0 1 Cytosol 1 0.500231644432236 1 0.999536711135528 hm5C_site_28044 DeepMRMD:1;iRNA_m5C:0.999536711135528 28045 chr1 65895708 65895708 1 + G T LUAD 65895720 + 65895700 65895740 41 GATTTCCTGTTATTCTTGCTCGTGTGGCTGTGGTAAGTTTT GATTTCCTTTTATTCTTGCTCGTGTGGCTGTGGTAAGTTTT < 41bp 1 0.171009075035402 1 0.138167768716812 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LEPROT ENSG00000213625 CDS Human protein_coding chr1:65895720 chr1:65895708 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_27620 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28045 DeepMRMD:1;iRNA_m5C:0.999536712157815 28046 chr1 248039252 248039252 1 + G A LUAD 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCACCGACCTGCGCAGTGTGCA < 41bp 1 0.657704924698065 1 0.204916596412659 experiment 0.68459015060387 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039252 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_27621 0 0 0 0 2 Cytosol 1 0.500232049799934 1 0.999535900400133 hm5C_site_28046 DeepMRMD:1;iRNA_m5C:0.999535900400133 28047 chr11 67804059 67804059 1 + G A LUAD 67804064 + 67804044 67804084 41 ACTACTTGTATCGGTGACGCCCCACCGGCCCGCAGCCCCTG ACTACTTGTATCGGTAACGCCCCACCGGCCCGCAGCCCCTG < 41bp 1 0.14427198955362 1 0.139933615922928 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFS8 ENSG00000110717 CDS Human protein_coding chr11:67804064 chr11:67804059 synonymous SNV . 0 16 hm5C_associated_SNPs_27623 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_28047 DeepMRMD:1;iRNA_m5C:0.999536712157814 28048 chr6 131900276 131900276 1 + C A LUAD 131900277 + 131900257 131900297 41 ATGTGAAGGATTATGGGGACCTGCCCTTTGCTGACATCCCT ATGTGAAGGATTATGGGGAACTGCCCTTTGCTGACATCCCT < 41bp 1 0.387114077598675 1 0.0702389478683472 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131900277 chr6:131900276 nonsynonymous SNV 0.728 2 20 hm5C_associated_SNPs_27624 0 0 0 0 2 exosome 1 0.500231643921119 1 0.999536712157761 hm5C_site_28048 DeepMRMD:1;iRNA_m5C:0.999536712157761 28049 chr3 47447462 47447462 1 + C A LUAD 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTAAGGGAGCACTTCCCTCAAGCCTACAGC < 41bp 1 0.0669482168103135 1 0.037454754114151 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447462 synonymous SNV . 0 15 hm5C_associated_SNPs_27625 0 0 1 0 3 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_28049 DeepMRMD:1;iRNA_m5C:0.999536712157815 28050 chr11 73941322 73941322 1 + G A LUAD 73941327 + 73941307 73941347 41 TTGAAGCCATGTATGGGGACCTTCCTCCTCCAATTATGCTG TTGAAGCCATGTATGAGGACCTTCCTCCTCCAATTATGCTG < 41bp 1 0.0634675221203389 1 0.0399886071681976 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PPME1 ENSG00000214517 CDS Human protein_coding chr11:73941327 chr11:73941322 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_27627 0 0 1 0 1 Ribosome 1 0.5002316439211 1 0.999536712157799 hm5C_site_28050 DeepMRMD:1;iRNA_m5C:0.999536712157799 28051 chr12 6979504 6979504 1 + C A LUAD 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGTGGTGCTTACCTCAAGCCCGAATTCGTGGACAT < 41bp 1 0.608681205807432 1 0.735070586204529 experiment 0.782637588385136 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979504 nonsynonymous SNV 0.977 4 17 hm5C_associated_SNPs_27628 0 0 1 0 1 Ribosome 1 0.500231643922652 0.529858827590942 0.999536712154696 hm5C_site_28051 DeepMRMD:0.529858827590942;iRNA_m5C:0.999536712154696 28052 chr12 6979503 6979503 1 + T A LUAD 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCCTTGTGGGTGGTGCTACCCTCAAGCCCGAATTCGTGG < 41bp 1 0.106803588438447 1 0.0291833579540253 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979503 nonsynonymous SNV 0.973 3 20 hm5C_associated_SNPs_27629 0 0 1 0 1 Ribosome 1 0.500231643921226 1 0.999536712157548 hm5C_site_28052 DeepMRMD:1;iRNA_m5C:0.999536712157548 28053 chr12 6979503 6979503 1 + T A LUAD 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGTGGTGCTACCCTCAAGCCCGAATTCGTGGACAT < 41bp 1 0.599895741896045 1 0.52504962682724 experiment 0.80020851620791 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979503 nonsynonymous SNV 0.973 3 16 hm5C_associated_SNPs_27630 0 0 1 0 1 Ribosome 1 0.500231644944813 0.94990074634552 0.999536710110375 hm5C_site_28053 DeepMRMD:0.94990074634552;iRNA_m5C:0.999536710110375 28054 chr7 23239964 23239964 1 + G T LUAD 23239949 + 23239929 23239969 41 AGGTATCTCTACTTCTGCTCCAGCTTTTGGATTTGGGAAGC AGGTATCTCTACTTCTGCTCCAGCTTTTGGATTTGTGAAGC < 41bp 1 0.579741867748958 1 0.162512540817261 experiment 0.840516264502083 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23239949 chr7:23239964 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_27632 0 0 1 0 0 Cytosol 1 0.500231922052674 1 0.999536155894652 hm5C_site_28054 DeepMRMD:1;iRNA_m5C:0.999536155894652 28055 chr20 2097421 2097421 1 + A T LUAD 2097414 + 2097394 2097434 41 GTATGTCCTGTCCCGGAGGCCAGACCCAGCCACCAACAAAA GTATGTCCTGTCCCGGAGGCCAGACCCTGCCACCAACAAAA < 41bp 1 0.105840954070332 1 0.378416508436203 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STK35 ENSG00000125834 CDS Human protein_coding chr20:2097414 chr20:2097421 synonymous SNV . 0 28 hm5C_associated_SNPs_27633 0 0 1 0 0 Ribosome 1 0.500231644914765 1 0.99953671017047 hm5C_site_28055 DeepMRMD:1;iRNA_m5C:0.99953671017047 28056 chr10 63850816 63850816 1 + G T LUAD 63850811 + 63850791 63850831 41 TTCCAACAGTGAGAAGGTGGCAGAGGAGGCGGGAGAGAAGG TTCCAACAGTGAGAAGGTGGCAGAGTAGGCGGGAGAGAAGG < 41bp 1 0.679613106746476 1 0.566472589969635 experiment 0.640773786507048 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control ARID5B ENSG00000150347 CDS Human protein_coding chr10:63850811 chr10:63850816 stopgain 0.365 0 26 hm5C_associated_SNPs_27634 0 0 0 0 0 Cytosol 1 0.500231643921092 0.86705482006073 0.999536712157815 hm5C_site_28056 DeepMRMD:0.86705482006073;iRNA_m5C:0.999536712157815 28057 chr10 7785194 7785194 1 + C A LUAD 7785208 + 7785188 7785228 41 AAAAATCCTCAACCTGGTTTCTGACCCAGAATCAGGTAAAA AAAAATACTCAACCTGGTTTCTGACCCAGAATCAGGTAAAA < 41bp 1 0.15342769077741 1 0.219612687826157 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7785208 chr10:7785194 synonymous SNV . 0 7 hm5C_associated_SNPs_27635 0 0 0 0 2 cytosol 1 0.500231644187987 1 0.999536711624025 hm5C_site_28057 DeepMRMD:1;iRNA_m5C:0.999536711624025 28058 chr2 217012886 217012886 1 + C G LUAD 217012900 + 217012880 217012920 41 TCCTCCCGCTGAGGTGACAACAAAAAGTCAGATTCCTCTCT TCCTCCGGCTGAGGTGACAACAAAAAGTCAGATTCCTCTCT < 41bp 1 0.64767232305036 1 0.304502189159393 experiment 0.704655353899279 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRCC5 ENSG00000079246 CDS Human protein_coding chr2:217012900 chr2:217012886 synonymous SNV . 0 7 hm5C_associated_SNPs_27636 0 0 1 0 0 Nucleus 1 0.500231643931722 1 0.999536712136557 hm5C_site_28058 DeepMRMD:1;iRNA_m5C:0.999536712136557 28059 chr20 31021635 31021635 1 + G C LUAD 31021621 + 31021601 31021641 41 TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATCGTCAGTC TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATCCTCAGTC < 41bp 1 0.16925067274997 1 0.237145930528641 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021621 chr20:31021635 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_27637 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28059 DeepMRMD:1;iRNA_m5C:0.999536712157815 28060 chr16 72142724 72142724 1 + G T LUAD 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCTCACAGGGATGCCCTGCCACTTGCACCCCACCA < 41bp 1 0.0844352780791497 1 0.092639684677124 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142724 nonsynonymous SNV 0.961 1 9 hm5C_associated_SNPs_27638 0 0 0 0 1 Cytosol 1 0.500231643920167 1 0.999536712159666 hm5C_site_28060 DeepMRMD:1;iRNA_m5C:0.999536712159666 28061 chr7 27827104 27827104 1 + T A LUAD 27827088 + 27827068 27827108 41 CCAAGCTTATGTCAGAGGTCCAGACTTTAAAAAATTTAGAT CCAAGCTTATGTCAGAGGTCCAGACTTTAAAAAATTAAGAT < 41bp 1 0.134637739315804 1 0.284632503986359 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27827088 chr7:27827104 stopgain 1.000 0 37 hm5C_associated_SNPs_27639 0 0 1 0 1 Ribosome 1 0.500231643925227 1 0.999536712149546 hm5C_site_28061 DeepMRMD:1;iRNA_m5C:0.999536712149546 28062 chr16 72142725 72142725 1 + C T LUAD 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCGTACAGGGATGCCCTGCCACTTGCACCCCACCA < 41bp 1 0.0987779668676286 1 0.0576693415641785 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142725 synonymous SNV . 0 10 hm5C_associated_SNPs_27640 0 0 0 0 2 Cytosol 1 0.500231643987893 1 0.999536712024215 hm5C_site_28062 DeepMRMD:1;iRNA_m5C:0.999536712024215 28063 chr7 142459785 142459785 1 + G A LUAD 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACA < 41bp 1 0.344669235991048 1 0.151968151330948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459785 nonsynonymous SNV 0.000 1 41 hm5C_associated_SNPs_27641 1 0 0 0 1 Cytosol 1 0.500231649818315 1 0.999536700363369 hm5C_site_28063 DeepMRMD:1;iRNA_m5C:0.999536700363369 Hereditary pancreatitis Hereditary pancreatitis 28064 chr7 142459785 142459785 1 + G A LUAD 142459766 + 142459746 142459786 41 ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACAC < 41bp 1 0.392924440069784 1 0.17532616853714 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459766 chr7:142459785 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_27642 1 0 0 0 1 Cytosol 1 0.500232625871112 1 0.999534748257776 hm5C_site_28064 DeepMRMD:1;iRNA_m5C:0.999534748257776 Hereditary pancreatitis Hereditary pancreatitis 28065 chr7 142459785 142459785 1 + G A LUAD 142459770 + 142459750 142459790 41 TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACACCCGC < 41bp 1 0.347948792175124 1 0.104953467845917 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459770 chr7:142459785 nonsynonymous SNV 0.000 1 36 hm5C_associated_SNPs_27644 1 0 0 0 1 Cytosol 1 0.500231643812273 1 0.999536712375453 hm5C_site_28065 DeepMRMD:1;iRNA_m5C:0.999536712375453 Hereditary pancreatitis Hereditary pancreatitis 28066 chr7 142459785 142459785 1 + G A LUAD 142459774 + 142459754 142459794 41 AATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCGTGT AATCAAGCTCTCCTCACGTGCAGTAATCAACACCCGCGTGT < 41bp 1 0.688776931486466 1 0.0605171322822571 experiment 0.622446137027068 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459774 chr7:142459785 nonsynonymous SNV 0.000 1 32 hm5C_associated_SNPs_27645 1 0 0 0 1 Cytosol 1 0.50023120966734 1 0.99953758066532 hm5C_site_28066 DeepMRMD:1;iRNA_m5C:0.99953758066532 Hereditary pancreatitis Hereditary pancreatitis 28067 chr7 142459785 142459785 1 + G A LUAD 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTGCAGTAATCAACACCCGCGTGTCCACCATCTC < 41bp 1 0.580259204183171 1 0.141888111829758 experiment 0.839481591633658 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459785 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_27647 1 0 0 0 1 Cytosol 1 0.500231643941423 1 0.999536712117153 hm5C_site_28067 DeepMRMD:1;iRNA_m5C:0.999536712117153 Hereditary pancreatitis Hereditary pancreatitis 28068 chr7 142459785 142459785 1 + G A LUAD 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTGCAGTAATCAACACCCGCGTGTCCACCATCTCTC < 41bp 1 0.52497577060219 1 0.0478902757167816 experiment 0.950048458795619 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459785 nonsynonymous SNV 0.000 1 20 hm5C_associated_SNPs_27648 1 0 0 0 1 Cytosol 1 0.500231644044583 1 0.999536711910834 hm5C_site_28068 DeepMRMD:1;iRNA_m5C:0.999536711910834 Hereditary pancreatitis Hereditary pancreatitis 28069 chr7 142459785 142459785 1 + G A LUAD 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTGCAGTAATCAACACCCGCGTGTCCACCATCTCTCT < 41bp 1 0.568529951422655 1 0.0683120787143707 experiment 0.862940097154691 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459785 nonsynonymous SNV 0.000 1 19 hm5C_associated_SNPs_27649 1 0 0 0 1 Cytosol 1 0.500230822817813 1 0.999538354364373 hm5C_site_28069 DeepMRMD:1;iRNA_m5C:0.999538354364373 Hereditary pancreatitis Hereditary pancreatitis 28070 chr7 142459785 142459785 1 + G A LUAD 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CGTGCAGTAATCAACACCCGCGTGTCCACCATCTCTCTGCC < 41bp 1 0.433743766361404 1 0.168707549571991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459785 nonsynonymous SNV 0.000 1 16 hm5C_associated_SNPs_27651 1 0 0 0 1 Cytosol 1 0.500231642939086 1 0.999536714121827 hm5C_site_28070 DeepMRMD:1;iRNA_m5C:0.999536714121827 Hereditary pancreatitis Hereditary pancreatitis 28071 chr7 142459785 142459785 1 + G A LUAD 142459795 + 142459775 142459815 41 AGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG AGTAATCAACACCCGCGTGTCCACCATCTCTCTGCCCACCG < 41bp 1 0.353147417763208 1 0.086677759885788 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459795 chr7:142459785 nonsynonymous SNV 0.000 1 11 hm5C_associated_SNPs_27652 1 0 0 0 1 Cytosol 1 0.500231641390596 1 0.999536717218807 hm5C_site_28071 DeepMRMD:1;iRNA_m5C:0.999536717218807 Hereditary pancreatitis Hereditary pancreatitis 28072 chr7 142459785 142459785 1 + G A LUAD 142459798 + 142459778 142459818 41 AATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCC AATCAACACCCGCGTGTCCACCATCTCTCTGCCCACCGCCC < 41bp 1 0.174152139259467 1 0.0269918143749237 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459798 chr7:142459785 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_27653 1 0 0 0 1 Cytosol 1 0.500231643921091 1 0.999536712157817 hm5C_site_28072 DeepMRMD:1;iRNA_m5C:0.999536712157817 Hereditary pancreatitis Hereditary pancreatitis 28073 chr7 142459785 142459785 1 + G A LUAD 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACACCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC < 41bp 1 0.44380772721018 1 0.192837476730347 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459785 nonsynonymous SNV 0.000 1 7 hm5C_associated_SNPs_27654 1 0 0 0 1 Cytosol 1 0.500231643944224 1 0.999536712111552 hm5C_site_28073 DeepMRMD:1;iRNA_m5C:0.999536712111552 Hereditary pancreatitis Hereditary pancreatitis 28074 chr7 142459785 142459785 1 + G A LUAD 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACACCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC < 41bp 1 0.466937419905853 1 0.338277280330658 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459785 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_27655 1 0 0 0 1 Cytosol 1 0.500231643921008 1 0.999536712157985 hm5C_site_28074 DeepMRMD:1;iRNA_m5C:0.999536712157985 Hereditary pancreatitis Hereditary pancreatitis 28075 chr7 142459785 142459785 1 + G A LUAD 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CACCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG < 41bp 1 0.654101169898553 1 0.28865909576416 experiment 0.691797660202895 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459785 nonsynonymous SNV 0.000 1 2 hm5C_associated_SNPs_27656 1 0 0 0 1 Cytosol 1 0.500231635519207 1 0.999536728961586 hm5C_site_28075 DeepMRMD:1;iRNA_m5C:0.999536728961586 Hereditary pancreatitis Hereditary pancreatitis 28076 chr3 50091820 50091820 1 + C A LUAD 50091805 + 50091785 50091825 41 TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCAAAGAG < 41bp 1 0.0535850327176958 1 0.020379364490509 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091805 chr3:50091820 nonsynonymous SNV 0.960 3 36 hm5C_associated_SNPs_27657 0 0 1 0 1 Nucleus 1 0.500231643920949 1 0.999536712158103 hm5C_site_28076 DeepMRMD:1;iRNA_m5C:0.999536712158103 28077 chr1 11080565 11080565 1 + G C LUAD 11080572 + 11080552 11080592 41 GAGGATGAGCTGCGGGAGTTCTTCTCTCAGTACGGGGATGT GAGGATGAGCTGCCGGAGTTCTTCTCTCAGTACGGGGATGT < 41bp 1 0.483989896190718 1 0.048504650592804 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TARDBP ENSG00000120948 CDS Human protein_coding chr1:11080572 chr1:11080565 nonsynonymous SNV 0.967 4 14 hm5C_associated_SNPs_27658 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28077 DeepMRMD:1;iRNA_m5C:0.999536712157815 28078 chr16 29818879 29818879 1 + C T LUAD 29818891 + 29818871 29818911 41 CGGCGCTGCCGCAGTGGCCGCCGGTGGCGTGGTGACCACGA CGGCGCTGTCGCAGTGGCCGCCGGTGGCGTGGTGACCACGA < 41bp 1 0.568985969869691 1 0.876541137695312 experiment 0.862028060260617 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29818891 chr16:29818879 nonsynonymous SNV 0.980 1 9 hm5C_associated_SNPs_27659 0 0 1 0 0 Cytosol 1 0.500232812461654 0.246917724609376 0.999534375076692 hm5C_site_28078 DeepMRMD:0.246917724609376;iRNA_m5C:0.999534375076692 28079 chr16 29818879 29818879 1 + C T LUAD 29818892 + 29818872 29818912 41 GGCGCTGCCGCAGTGGCCGCCGGTGGCGTGGTGACCACGAC GGCGCTGTCGCAGTGGCCGCCGGTGGCGTGGTGACCACGAC < 41bp 1 0.644805179931687 1 0.924100041389465 experiment 0.710389640136627 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29818892 chr16:29818879 nonsynonymous SNV 0.980 1 8 hm5C_associated_SNPs_27660 0 0 1 0 0 Cytosol 1 0.50023164392108 0.15179991722107 0.99953671215784 hm5C_site_28079 DeepMRMD:0.15179991722107;iRNA_m5C:0.99953671215784 28080 chr6 7581116 7581116 1 + G C LUAD 7581100 + 7581080 7581120 41 GACCAGGATATCACGCGGTTCCAGAACTCTCTGAAAGAGCT GACCAGGATATCACGCGGTTCCAGAACTCTCTGAAACAGCT < 41bp 1 0.229325532863557 1 0.15895864367485 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581100 chr6:7581116 nonsynonymous SNV 0.984 0 37 hm5C_associated_SNPs_27661 0 0 1 0 0 Nucleus 1 0.500231565510853 1 0.999536868978293 hm5C_site_28080 DeepMRMD:1;iRNA_m5C:0.999536868978293 28081 chr6 7581116 7581116 1 + G C LUAD 7581125 + 7581105 7581145 41 ACTCTCTGAAAGAGCTGCAGCTGCAGAAGCAGAAGGTGGAA ACTCTCTGAAACAGCTGCAGCTGCAGAAGCAGAAGGTGGAA < 41bp 1 0.678607441625283 1 0.573496460914612 experiment 0.642785116749434 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581125 chr6:7581116 nonsynonymous SNV 0.984 0 12 hm5C_associated_SNPs_27664 0 0 1 0 0 Nucleus 1 0.50023166477207 0.853007078170776 0.999536670455859 hm5C_site_28081 DeepMRMD:0.853007078170776;iRNA_m5C:0.999536670455859 28082 chr17 43226847 43226847 1 + C T LUAD 43226860 + 43226840 43226880 41 GACGACTCGTCCGCTGGCGGCGACTTCCCGCCGCCGGCAGA GACGACTTGTCCGCTGGCGGCGACTTCCCGCCGCCGGCAGA < 41bp 1 0.492923579337861 1 0.119609475135803 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HEXIM1 ENSG00000186834 CDS Human protein_coding chr17:43226860 chr17:43226847 nonsynonymous SNV 0.197 0 8 hm5C_associated_SNPs_27665 0 0 1 0 0 Ribosome 1 0.500231643913594 1 0.999536712172812 hm5C_site_28082 DeepMRMD:1;iRNA_m5C:0.999536712172812 28083 chr11 43411234 43411234 1 + A C LUAD 43411217 + 43411197 43411237 41 AACAGAAACAATTAGTTGCTCAAAAAATTCACATAGAAGAG AACAGAAACAATTAGTTGCTCAAAAAATTCACATAGACGAG < 41bp 1 0.432703979899932 1 0.327079117298126 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC17 ENSG00000052841 CDS Human protein_coding chr11:43411217 chr11:43411234 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_27666 0 0 1 0 1 Nucleus 1 0.500231705110954 1 0.999536589778092 hm5C_site_28083 DeepMRMD:1;iRNA_m5C:0.999536589778092 28084 chrX 107911647 107911647 1 + G T LUAD 107911644 + 107911624 107911664 41 TTCACGGTTTCCCTGGTGTGCAGGGTCCCCCAGGCCCTCCT TTCACGGTTTCCCTGGTGTGCAGTGTCCCCCAGGCCCTCCT < 41bp 1 0.489647903110366 1 0.283250570297241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107911644 chrX:107911647 nonsynonymous SNV 0.979 3 24 hm5C_associated_SNPs_27667 0 0 1 0 2 Ribosome 1 0.50022977894347 1 0.99954044211306 hm5C_site_28084 DeepMRMD:1;iRNA_m5C:0.99954044211306 28085 chr2 32673994 32673994 1 + C T LUAD 32673982 + 32673962 32674002 41 GTCAGATGAAATTGATTTATCAGATGTCCTTTCAGGTAGTG GTCAGATGAAATTGATTTATCAGATGTCCTTTTAGGTAGTG < 41bp 1 0.140215535225281 1 0.430282771587372 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673982 chr2:32673994 nonsynonymous SNV 0.999 1 33 hm5C_associated_SNPs_27668 0 0 1 0 1 Nucleus 1 0.500231644772093 1 0.999536710455814 hm5C_site_28085 DeepMRMD:1;iRNA_m5C:0.999536710455814 28086 chr2 32673994 32673994 1 + C T LUAD 32673989 + 32673969 32674009 41 GAAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTT GAAATTGATTTATCAGATGTCCTTTTAGGTAGTGATTTCTT < 41bp 1 0.00714926758746728 1 0.0261027812957764 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673989 chr2:32673994 nonsynonymous SNV 0.999 1 26 hm5C_associated_SNPs_27669 0 0 1 0 1 Nucleus 1 0.500231643907784 1 0.999536712184432 hm5C_site_28086 DeepMRMD:1;iRNA_m5C:0.999536712184432 28087 chr2 32673994 32673994 1 + C T LUAD 32673990 + 32673970 32674010 41 AAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTT AAATTGATTTATCAGATGTCCTTTTAGGTAGTGATTTCTTT < 41bp 1 0.00960285201826464 1 0.0573183596134186 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673990 chr2:32673994 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_27670 0 0 1 0 1 Nucleus 1 0.500228723354002 1 0.999542553291996 hm5C_site_28087 DeepMRMD:1;iRNA_m5C:0.999542553291996 28088 chr22 41573107 41573107 1 + G T LUAD 41573112 + 41573092 41573132 41 GCCAAGCACTGCCAGGAGAACAAATGCCCGGTGCCGTTCTG GCCAAGCACTGCCAGTAGAACAAATGCCCGGTGCCGTTCTG < 41bp 1 0.188682769267798 1 0.383049011230469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP300 ENSG00000100393 CDS Human protein_coding chr22:41573112 chr22:41573107 stopgain 1.000 1 16 hm5C_associated_SNPs_27671 0 0 1 0 0 Cytosol 1 0.500231645021324 1 0.999536709957352 hm5C_site_28088 DeepMRMD:1;iRNA_m5C:0.999536709957352 28089 chr6 7572172 7572172 1 + G C LUAD 7572161 + 7572141 7572181 41 CCAACAGAGAAAATGACAAGCAAGAAACATGGATGCTGATG CCAACAGAGAAAATGACAAGCAAGAAACATGCATGCTGATG < 41bp 1 0.489505918564434 1 0.788382768630981 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572161 chr6:7572172 nonsynonymous SNV 0.998 2 32 hm5C_associated_SNPs_27672 0 0 1 0 1 Nucleus 1 0.500231644147247 0.423234462738038 0.999536711705507 hm5C_site_28089 DeepMRMD:0.423234462738038;iRNA_m5C:0.999536711705507 28090 chr6 7572172 7572172 1 + G C LUAD 7572176 + 7572156 7572196 41 ACAAGCAAGAAACATGGATGCTGATGGAGCTGCAGAAGATT ACAAGCAAGAAACATGCATGCTGATGGAGCTGCAGAAGATT < 41bp 1 0.205022038282134 1 0.0895650088787079 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572176 chr6:7572172 nonsynonymous SNV 0.998 2 17 hm5C_associated_SNPs_27673 0 0 1 0 1 Nucleus 1 0.500226130832232 1 0.999547738335535 hm5C_site_28090 DeepMRMD:1;iRNA_m5C:0.999547738335535 28091 chr1 17272844 17272844 1 + G A LUAD 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCTGAGCACCCTCAACGAGAGCCTTGC < 41bp 1 0.121850636629661 1 0.0398503541946411 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272844 nonsynonymous SNV 0.827 2 22 hm5C_associated_SNPs_27674 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_28091 DeepMRMD:1;iRNA_m5C:0.999536712157815 28092 chr11 66258798 66258798 1 + C A LUAD 66258782 + 66258762 66258802 41 AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCGGGG AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCAGGGG < 41bp 1 0.12437872573189 1 0.152836114168167 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258782 chr11:66258798 synonymous SNV . 0 37 hm5C_associated_SNPs_27675 0 0 0 0 2 Nucleus 1 0.500231642205663 1 0.999536715588675 hm5C_site_28092 DeepMRMD:1;iRNA_m5C:0.999536715588675 28093 chr11 61913164 61913164 1 + G T LUAD 61913150 + 61913130 61913170 41 GGCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGG GGCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGTAGGTGG < 41bp 1 0.114226550610864 1 0.360382199287415 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913150 chr11:61913164 stopgain 1.000 1 35 hm5C_associated_SNPs_27676 0 0 1 0 3 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_28093 DeepMRMD:1;iRNA_m5C:0.999536712157815 28094 chr11 61913164 61913164 1 + G T LUAD 61913151 + 61913131 61913171 41 GCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGGAGGTGGA GCCAAGAAAAAGGCGGCGGCCAAGAAGATGGAGTAGGTGGA < 41bp 1 0.646824655119984 1 0.737313508987427 experiment 0.706350689760032 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913151 chr11:61913164 stopgain 1.000 1 34 hm5C_associated_SNPs_27677 0 0 1 0 3 chromatin 1 0.500231643921092 0.525372982025146 0.999536712157815 hm5C_site_28094 DeepMRMD:0.525372982025146;iRNA_m5C:0.999536712157815 28095 chr11 61913164 61913164 1 + G T LUAD 61913174 + 61913154 61913194 41 GAAGATGGAGGAGGTGGAAGCACGCAGGAAGCAGGAAGAGG GAAGATGGAGTAGGTGGAAGCACGCAGGAAGCAGGAAGAGG < 41bp 1 0.428264749710506 1 0.337863504886627 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913174 chr11:61913164 stopgain 1.000 1 11 hm5C_associated_SNPs_27678 0 0 1 0 3 chromatin 1 0.50023164382881 1 0.99953671234238 hm5C_site_28095 DeepMRMD:1;iRNA_m5C:0.99953671234238 28096 chr11 65268419 65268419 1 + C T LUAD 65268439 + 65268419 65268459 41 CTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATA TTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATA < 41bp 1 0.255701368659718 1 0.0839554369449615 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268439 chr11:65268419 . . 0 1 hm5C_associated_SNPs_27679 0 0 1 1 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_28096 DeepMRMD:1;iRNA_m5C:0.999536712157815 28097 chr21 45736374 45736374 1 + G C LUAD 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACGTGCAGCGCGGAGGGACGCCCTCTGCCTTCGACCGGA < 41bp 1 0.354318662828446 1 0.146379262208939 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736374 synonymous SNV . 0 13 hm5C_associated_SNPs_27680 0 0 1 0 2 Ribosome 1 0.500363434123216 1 0.999273131753567 hm5C_site_28097 DeepMRMD:1;iRNA_m5C:0.999273131753567 28098 chr21 45736374 45736374 1 + G C LUAD 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACGTGCAGCGCGGAGGGACGCCCTCTGCCTTCGACCGGATC < 41bp 1 0.0771801189366266 1 0.0587510764598846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736374 synonymous SNV . 0 11 hm5C_associated_SNPs_27681 0 0 1 0 2 Ribosome 1 0.500231600563687 1 0.999536798872626 hm5C_site_28098 DeepMRMD:1;iRNA_m5C:0.999536798872626 28099 chr21 45736374 45736374 1 + G C LUAD 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CGTGCAGCGCGGAGGGACGCCCTCTGCCTTCGACCGGATCC < 41bp 1 0.0765143409933381 1 0.0605251789093018 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736374 synonymous SNV . 0 10 hm5C_associated_SNPs_27682 0 0 1 0 2 Ribosome 1 0.500231643921073 1 0.999536712157854 hm5C_site_28099 DeepMRMD:1;iRNA_m5C:0.999536712157854 28100 chr21 45736374 45736374 1 + G C LUAD 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT GTGCAGCGCGGAGGGACGCCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.320117829164893 1 0.222296088933945 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736374 synonymous SNV . 0 9 hm5C_associated_SNPs_27683 0 0 1 0 2 Ribosome 1 0.500231637759279 1 0.999536724481441 hm5C_site_28100 DeepMRMD:1;iRNA_m5C:0.999536724481441 28101 chr22 19707369 19707369 1 + C T LUAD 19707377 + 19707357 19707397 41 GGTCCACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA GGTCCACAGCCTTTTCCTGACAGACTTGTACAAGGACCGGA < 41bp 1 0.252677872821887 1 0.125095129013062 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707377 chr22:19707369 synonymous SNV . 0 13 hm5C_associated_SNPs_27684 0 0 0 1 1 chromatin 1 0.500231636795596 1 0.999536726408808 hm5C_site_28101 DeepMRMD:1;iRNA_m5C:0.999536726408808 28102 chr9 135926292 135926292 1 + A T LUAD 135926282 + 135926262 135926302 41 AGGATGAGGAGGTGCCCAAGCAGCCACTGGAGGCTGCAGCC AGGATGAGGAGGTGCCCAAGCAGCCACTGGTGGCTGCAGCC < 41bp 1 0.612445735345813 1 0.533173561096191 experiment 0.775108529308374 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135926282 chr9:135926292 nonsynonymous SNV 0.976 4 31 hm5C_associated_SNPs_27685 0 0 1 0 0 Ribosome 1 0.500231643921199 0.933652877807618 0.999536712157602 hm5C_site_28102 DeepMRMD:0.933652877807618;iRNA_m5C:0.999536712157602 28103 chr9 135926292 135926292 1 + A T LUAD 135926303 + 135926283 135926323 41 AGCCACTGGAGGCTGCAGCCCAGACGTGGAGGAGAGTCTGC AGCCACTGGTGGCTGCAGCCCAGACGTGGAGGAGAGTCTGC < 41bp 1 0.531110287539358 1 0.438384503126144 experiment 0.937779424921284 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135926303 chr9:135926292 nonsynonymous SNV 0.976 4 10 hm5C_associated_SNPs_27687 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28103 DeepMRMD:1;iRNA_m5C:0.999536712157815 28104 chr15 50789393 50789393 1 + G A LUAD 50789404 + 50789384 50789424 41 AGAAATCTGGAAGTTACCACCTGTGCTTTTAGTGCATCTGA AGAAATCTGAAAGTTACCACCTGTGCTTTTAGTGCATCTGA < 41bp 1 0.261190313023723 1 0.255454897880554 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50789404 chr15:50789393 stopgain 1.000 1 10 hm5C_associated_SNPs_27688 0 0 1 0 1 Ribosome 1 0.500231644115414 1 0.999536711769171 hm5C_site_28104 DeepMRMD:1;iRNA_m5C:0.999536711769171 28105 chr11 62656092 62656092 1 + C T LUAD 62656090 + 62656070 62656110 41 CAGCCAGGCCGTGAGGAGGGCTCCCCTCTTGAGCTGGAACG CAGCCAGGCCGTGAGGAGGGCTTCCCTCTTGAGCTGGAACG < 41bp 1 0.120097946652895 1 0.159861981868744 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62656090 chr11:62656092 nonsynonymous SNV 0.005 3 23 hm5C_associated_SNPs_27689 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28105 DeepMRMD:1;iRNA_m5C:0.999536712157815 28106 chr2 27302068 27302068 1 + G T LUAD 27302048 + 27302028 27302068 41 ACACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAG ACACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAT < 41bp 1 0.510712813010793 1 0.196035712957382 experiment 0.978574373978415 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302048 chr2:27302068 nonsynonymous SNV 0.726 1 41 hm5C_associated_SNPs_27690 0 0 1 0 1 Cytosol 1 0.500231643923421 1 0.999536712153158 hm5C_site_28106 DeepMRMD:1;iRNA_m5C:0.999536712153158 28107 chr2 27302068 27302068 1 + G T LUAD 27302063 + 27302043 27302083 41 GGGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCC GGGCCCTCAGCCCCGGGGGGCCCCATGCCCAGATTGCCCCC < 41bp 1 0.336669633340947 1 0.110284298658371 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302063 chr2:27302068 nonsynonymous SNV 0.726 1 26 hm5C_associated_SNPs_27691 0 0 1 0 1 Cytosol 1 0.500231643925392 1 0.999536712149216 hm5C_site_28107 DeepMRMD:1;iRNA_m5C:0.999536712149216 28108 chr2 27302068 27302068 1 + G T LUAD 27302064 + 27302044 27302084 41 GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC GGCCCTCAGCCCCGGGGGGCCCCATGCCCAGATTGCCCCCC < 41bp 1 0.176169061949017 1 0.288736760616302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302064 chr2:27302068 nonsynonymous SNV 0.726 1 25 hm5C_associated_SNPs_27692 0 0 1 0 1 Cytosol 1 0.500231643921128 1 0.999536712157745 hm5C_site_28108 DeepMRMD:1;iRNA_m5C:0.999536712157745 28109 chr2 27302068 27302068 1 + G T LUAD 27302065 + 27302045 27302085 41 GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG GCCCTCAGCCCCGGGGGGCCCCATGCCCAGATTGCCCCCCG < 41bp 1 0.267939704860095 1 0.238403469324112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302065 chr2:27302068 nonsynonymous SNV 0.726 1 24 hm5C_associated_SNPs_27693 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28109 DeepMRMD:1;iRNA_m5C:0.999536712157815 28110 chr2 27302068 27302068 1 + G T LUAD 27302066 + 27302046 27302086 41 CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG CCCTCAGCCCCGGGGGGCCCCATGCCCAGATTGCCCCCCGG < 41bp 1 0.284343338803246 1 0.210852652788162 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302066 chr2:27302068 nonsynonymous SNV 0.726 1 23 hm5C_associated_SNPs_27694 0 0 1 0 1 Cytosol 1 0.500231643912492 1 0.999536712175016 hm5C_site_28110 DeepMRMD:1;iRNA_m5C:0.999536712175016 28111 chr2 232576100 232576100 1 + G A LUAD 232576110 + 232576090 232576130 41 GGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTG GGCAGAAAATAGAAGAGACGCCCCTGCTAACGGGAATGCTG < 41bp 1 0.210974045064229 1 0.0224751532077789 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576110 chr2:232576100 stopgain 1.000 2 11 hm5C_associated_SNPs_27695 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28111 DeepMRMD:1;iRNA_m5C:0.999536712157815 28112 chr2 28812608 28812608 1 + C G LUAD 28812604 + 28812584 28812624 41 CACTTCAGCAGCAAGTCTCACTCCCGAGCAGCCAGTGCTCT CACTTCAGCAGCAAGTCTCACTCCGGAGCAGCCAGTGCTCT < 41bp 1 0.440601530408906 1 0.346556842327118 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PLB1 ENSG00000163803 CDS Human protein_coding chr2:28812604 chr2:28812608 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_27696 0 0 0 0 2 exosome 1 0.500231646473449 1 0.999536707053101 hm5C_site_28112 DeepMRMD:1;iRNA_m5C:0.999536707053101 28113 chr2 28812608 28812608 1 + C G LUAD 28812615 + 28812595 28812635 41 CAAGTCTCACTCCCGAGCAGCCAGTGCTCTCTGGAACAATA CAAGTCTCACTCCGGAGCAGCCAGTGCTCTCTGGAACAATA < 41bp 1 0.0607699580156682 1 0.048957496881485 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PLB1 ENSG00000163803 CDS Human protein_coding chr2:28812615 chr2:28812608 nonsynonymous SNV 0.002 0 14 hm5C_associated_SNPs_27697 0 0 0 0 2 exosome 1 0.500232513878357 1 0.999534972243287 hm5C_site_28113 DeepMRMD:1;iRNA_m5C:0.999534972243287 28114 chr12 132325149 132325149 1 + G A LUAD 132325139 + 132325119 132325159 41 GTCCGGACGTTCCCACGGGACTCACCACTGGGGCACGACAC GTCCGGACGTTCCCACGGGACTCACCACTGAGGCACGACAC < 41bp 1 0.207794552943767 1 0.123150080442429 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325139 chr12:132325149 nonsynonymous SNV 0.148 1 31 hm5C_associated_SNPs_27698 0 0 1 0 0 Cytosol 1 0.500232596520985 1 0.999534806958031 hm5C_site_28114 DeepMRMD:1;iRNA_m5C:0.999534806958031 28115 chr18 633349 633349 1 + G T LUAD 633344 + 633324 633364 41 AAGATGTTACCTGGGCAGGACAGAGGACTGTGTGGGGAACT AAGATGTTACCTGGGCAGGACAGAGTACTGTGTGGGGAACT < 41bp 1 0.431448603839115 1 0.429532319307327 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633344 chr18:633349 nonsynonymous SNV 0.041 0 26 hm5C_associated_SNPs_27699 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28115 DeepMRMD:1;iRNA_m5C:0.999536712157815 28116 chr2 27302069 27302069 1 + G T LUAD 27302063 + 27302043 27302083 41 GGGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCC GGGCCCTCAGCCCCGGGGGGCCCCAGTCCCAGATTGCCCCC < 41bp 1 0.404744580450582 1 0.103249430656433 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302063 chr2:27302069 nonsynonymous SNV 0.715 1 27 hm5C_associated_SNPs_27700 0 0 1 0 1 Cytosol 1 0.500231644319426 1 0.999536711361148 hm5C_site_28116 DeepMRMD:1;iRNA_m5C:0.999536711361148 28117 chr2 27302069 27302069 1 + G T LUAD 27302064 + 27302044 27302084 41 GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC GGCCCTCAGCCCCGGGGGGCCCCAGTCCCAGATTGCCCCCC < 41bp 1 0.285515911357695 1 0.494670808315277 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302064 chr2:27302069 nonsynonymous SNV 0.715 1 26 hm5C_associated_SNPs_27701 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28117 DeepMRMD:1;iRNA_m5C:0.999536712157815 28118 chr2 27302069 27302069 1 + G T LUAD 27302065 + 27302045 27302085 41 GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG GCCCTCAGCCCCGGGGGGCCCCAGTCCCAGATTGCCCCCCG < 41bp 1 0.437404716660324 1 0.355012893676758 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302065 chr2:27302069 nonsynonymous SNV 0.715 1 25 hm5C_associated_SNPs_27702 0 0 1 0 1 Cytosol 1 0.500231643921097 1 0.999536712157807 hm5C_site_28118 DeepMRMD:1;iRNA_m5C:0.999536712157807 28119 chr2 27302069 27302069 1 + G T LUAD 27302066 + 27302046 27302086 41 CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG CCCTCAGCCCCGGGGGGCCCCAGTCCCAGATTGCCCCCCGG < 41bp 1 0.251460028020696 1 0.670376121997833 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302066 chr2:27302069 nonsynonymous SNV 0.715 1 24 hm5C_associated_SNPs_27703 0 0 1 0 1 Cytosol 1 0.500231643913087 0.659247756004334 0.999536712173825 hm5C_site_28119 DeepMRMD:0.659247756004334;iRNA_m5C:0.999536712173825 28120 chr13 52604958 52604958 1 + A T LUAD 52604967 + 52604947 52604987 41 TGAGAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAG TGAGAAGCGCATCATCCACGCAGCAGCTCATCAGGTACAAG < 41bp 1 0.577725678011617 1 0.157740265130997 experiment 0.844548643976766 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604967 chr13:52604958 nonsynonymous SNV 0.922 3 12 hm5C_associated_SNPs_27705 0 0 1 0 0 nucleoplasm 1 0.500231644400695 1 0.99953671119861 hm5C_site_28120 DeepMRMD:1;iRNA_m5C:0.99953671119861 28121 chr13 52604958 52604958 1 + A T LUAD 52604970 + 52604950 52604990 41 GAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAGTGC GAAGCGCATCATCCACGCAGCAGCTCATCAGGTACAAGTGC < 41bp 1 0.176028313260781 1 0.0679183006286621 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604970 chr13:52604958 nonsynonymous SNV 0.922 3 9 hm5C_associated_SNPs_27706 0 0 1 0 0 nucleoplasm 1 0.500231658163009 1 0.999536683673983 hm5C_site_28121 DeepMRMD:1;iRNA_m5C:0.999536683673983 28122 chr19 34868423 34868423 1 + G T LUAD 34868408 + 34868388 34868428 41 CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGG CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTTACTGG < 41bp 1 0.211259597405114 1 0.548024535179138 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868408 chr19:34868423 nonsynonymous SNV 0.997 2 36 hm5C_associated_SNPs_27707 0 0 1 0 1 Ribosome 1 0.500231643921092 0.903950929641724 0.999536712157815 hm5C_site_28122 DeepMRMD:0.903950929641724;iRNA_m5C:0.999536712157815 28123 chr19 34868423 34868423 1 + G T LUAD 34868413 + 34868393 34868433 41 TCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGGAAGGG TCGCCCCTGTGCCAGCGTGTCCGGAGCGGTTACTGGAAGGG < 41bp 1 0.673045294375194 1 0.507802367210388 experiment 0.653909411249613 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868413 chr19:34868423 nonsynonymous SNV 0.997 2 31 hm5C_associated_SNPs_27708 0 0 1 0 1 Ribosome 1 0.500231643921044 0.984395265579224 0.999536712157912 hm5C_site_28123 DeepMRMD:0.984395265579224;iRNA_m5C:0.999536712157912 28124 chr19 34868425 34868425 1 + C T LUAD 34868408 + 34868388 34868428 41 CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGACTGG CATCTTCGCCCCTGTGCCAGCGTGTCCGGAGCGGTGATTGG < 41bp 1 0.204780873905474 1 0.427545875310898 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868408 chr19:34868425 synonymous SNV . 0 38 hm5C_associated_SNPs_27709 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28124 DeepMRMD:1;iRNA_m5C:0.999536712157815 28125 chr5 15937008 15937008 1 + C T LUAD 15937013 + 15936993 15937033 41 CACGGTGTGGAGTACCTCGCCAAGAACTGCACCAAACTCAA CACGGTGTGGAGTACTTCGCCAAGAACTGCACCAAACTCAA < 41bp 1 0.619789493839844 1 0.713243961334229 experiment 0.760421012320312 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXL7 ENSG00000183580 CDS Human protein_coding chr5:15937013 chr5:15937008 nonsynonymous SNV 0.998 4 16 hm5C_associated_SNPs_27712 0 0 0 0 0 exosome 1 0.500231558057006 0.573512077331542 0.999536883885989 hm5C_site_28125 DeepMRMD:0.573512077331542;iRNA_m5C:0.999536883885989 28126 chr14 23794478 23794478 1 + T C LUAD 23794459 + 23794439 23794479 41 CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATG CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCACG < 41bp 1 0.282271212107163 1 0.325071275234222 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794459 chr14:23794478 nonsynonymous SNV 0.995 2 40 hm5C_associated_SNPs_27713 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28126 DeepMRMD:1;iRNA_m5C:0.999536712157815 28127 chr14 23794478 23794478 1 + T C LUAD 23794460 + 23794440 23794480 41 TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATGG TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCACGG < 41bp 1 0.462661350609192 1 0.556021392345428 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794460 chr14:23794478 nonsynonymous SNV 0.995 2 39 hm5C_associated_SNPs_27714 0 0 1 0 1 unknown 1 0.500231643921058 0.887957215309144 0.999536712157883 hm5C_site_28127 DeepMRMD:0.887957215309144;iRNA_m5C:0.999536712157883 28128 chr15 65157686 65157686 1 + G T LUAD 65157697 + 65157677 65157717 41 CCCTCTCAGGCTGAGGGCACCCCAGGAACTCCTCCAAAGGA CCCTCTCAGTCTGAGGGCACCCCAGGAACTCCTCCAAAGGA < 41bp 1 0.234931638727213 1 0.200357466936111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHO2 ENSG00000241839 CDS Human protein_coding chr15:65157697 chr15:65157686 nonsynonymous SNV 0.002 0 10 hm5C_associated_SNPs_27715 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_28128 DeepMRMD:1;iRNA_m5C:0.999536712157816 28129 chr22 38209491 38209491 1 + G T LUAD 38209473 + 38209453 38209493 41 TCACTGCCTCCCTCCAGGCCCTGCTGACCCCAGAGGACGCA TCACTGCCTCCCTCCAGGCCCTGCTGACCCCAGAGGACTCA < 41bp 1 0.37458389435355 1 0.0333817303180695 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GCAT ENSG00000100116 CDS Human protein_coding chr22:38209473 chr22:38209491 nonsynonymous SNV 0.332 5 39 hm5C_associated_SNPs_27718 0 0 1 0 1 Cytosol 1 0.500231643920976 1 0.999536712158049 hm5C_site_28129 DeepMRMD:1;iRNA_m5C:0.999536712158049 28130 chr22 45958897 45958897 1 + G A LUAD 45958896 + 45958876 45958916 41 CACCAACATCCAAGCGCCCGCGGTGGTTTTCCGCATGGGCC CACCAACATCCAAGCGCCCGCAGTGGTTTTCCGCATGGGCC < 41bp 1 0.34215787740023 1 0.333407163619995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45958896 chr22:45958897 synonymous SNV . 0 22 hm5C_associated_SNPs_27719 0 0 1 0 0 cytosol 1 0.500231643921122 1 0.999536712157756 hm5C_site_28130 DeepMRMD:1;iRNA_m5C:0.999536712157756 28131 chr22 47290698 47290698 1 + C T LUAD 47290696 + 47290676 47290716 41 CCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGT CCAGATCCACATAGACATCCCTTGCATGAGCCCTGAAGCGT < 41bp 1 0.11500182299946 1 0.0681600868701935 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47290696 chr22:47290698 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_27720 0 0 1 0 2 Cytosol 1 0.500234051108653 1 0.999531897782695 hm5C_site_28131 DeepMRMD:1;iRNA_m5C:0.999531897782695 28132 chr17 80676907 80676907 1 + G A LUAD 80676908 + 80676888 80676928 41 GGAGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTG GGAGCGTGCTGGTGATGGAACACATGGACATGAGGCATCTG < 41bp 1 0.524809377961316 1 0.0712052881717682 experiment 0.950381244077368 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80676908 chr17:80676907 synonymous SNV . 0 20 hm5C_associated_SNPs_27721 0 0 1 0 1 Ribosome 1 0.500231644297167 1 0.999536711405667 hm5C_site_28132 DeepMRMD:1;iRNA_m5C:0.999536711405667 28133 chr17 80676907 80676907 1 + G A LUAD 80676910 + 80676890 80676930 41 AGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTGAG AGCGTGCTGGTGATGGAACACATGGACATGAGGCATCTGAG < 41bp 1 0.69556811109346 1 0.258817791938782 experiment 0.608863777813081 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80676910 chr17:80676907 synonymous SNV . 0 18 hm5C_associated_SNPs_27722 0 0 1 0 1 Ribosome 1 0.500231668821283 1 0.999536662357433 hm5C_site_28133 DeepMRMD:1;iRNA_m5C:0.999536662357433 28134 chr12 104336952 104336952 1 + A G LUAD 104336943 + 104336923 104336963 41 GGATGAATACTGTATTCAGGCCCTTCCCGAATTTGATGGGA GGATGAATACTGTATTCAGGCCCTTCCCGGATTTGATGGGA < 41bp 1 0.0754422215884282 1 0.0631937980651855 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104336943 chr12:104336952 nonsynonymous SNV 0.990 4 30 hm5C_associated_SNPs_27723 0 0 1 0 0 Nucleus 1 0.500231709782453 1 0.999536580435093 hm5C_site_28134 DeepMRMD:1;iRNA_m5C:0.999536580435093 28135 chr12 104336952 104336952 1 + A G LUAD 104336944 + 104336924 104336964 41 GATGAATACTGTATTCAGGCCCTTCCCGAATTTGATGGGAA GATGAATACTGTATTCAGGCCCTTCCCGGATTTGATGGGAA < 41bp 1 0.00562900820583623 1 0.0396439135074615 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104336944 chr12:104336952 nonsynonymous SNV 0.990 4 29 hm5C_associated_SNPs_27724 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28135 DeepMRMD:1;iRNA_m5C:0.999536712157815 28136 chr8 11643643 11643643 1 + A T LUAD 11643658 + 11643638 11643678 41 CTACCAGAAAGAACAGTGCCCTGCTGGCCACCAGGTCATGA CTACCTGAAAGAACAGTGCCCTGCTGGCCACCAGGTCATGA < 41bp 1 0.446597359712797 1 0.0238261520862579 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11643658 chr8:11643643 nonsynonymous SNV 0.975 1 6 hm5C_associated_SNPs_27725 0 0 1 0 0 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_28136 DeepMRMD:1;iRNA_m5C:0.99953671215782 28137 chr19 1041907 1041907 1 + A G LUAD 1041909 + 1041889 1041929 41 ATCTGTAATGTGAACAACACCTGCTTTCCGCAGCTGACACC ATCTGTAATGTGAACAACGCCTGCTTTCCGCAGCTGACACC < 41bp 1 0.344487086222359 1 0.0634014010429382 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041909 chr19:1041907 nonsynonymous SNV 0.797 1 19 hm5C_associated_SNPs_27726 0 0 0 0 2 Endoplasmic reticulum 1 0.500231307346319 1 0.999537385307361 hm5C_site_28137 DeepMRMD:1;iRNA_m5C:0.999537385307361 28138 chr8 104438329 104438329 1 + G T LUAD 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCATGCTATGGAGACGAGGAAGAGCC < 41bp 1 0.556883579550429 1 0.418458580970764 experiment 0.886232840899141 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438329 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_27727 0 0 1 0 2 Nucleus 1 0.500231643921558 1 0.999536712156883 hm5C_site_28138 DeepMRMD:1;iRNA_m5C:0.999536712156883 28139 chr2 32339791 32339791 1 + G T LUAD 32339810 + 32339790 32339830 41 GGATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTA GTATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTA < 41bp 1 0.0824888496077982 1 0.0610367059707642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339810 chr2:32339791 nonsynonymous SNV 0.933 0 2 hm5C_associated_SNPs_27729 0 0 1 0 1 Ribosome 1 0.500231643915258 1 0.999536712169484 hm5C_site_28139 DeepMRMD:1;iRNA_m5C:0.999536712169484 28140 chr13 111077199 111077199 1 + G T LUAD 111077196 + 111077176 111077216 41 AAGGGGAGCCCCCGGAGTAACGGGACCCAAGGGCGACGTGG AAGGGGAGCCCCCGGAGTAACGGTACCCAAGGGCGACGTGG < 41bp 1 0.591017773902194 1 0.687686145305634 experiment 0.817964452195612 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111077196 chr13:111077199 nonsynonymous SNV 0.543 5 24 hm5C_associated_SNPs_27731 0 0 0 0 1 Cytosol 1 0.500231643921096 0.624627709388732 0.999536712157808 hm5C_site_28140 DeepMRMD:0.624627709388732;iRNA_m5C:0.999536712157808 28141 chr12 69966000 69966000 1 + G C LUAD 69966003 + 69965983 69966023 41 ACATCCTTCTGTGGGAAGTGCTCGCCTGCCTTCAGTAGGGG ACATCCTTCTGTGGGAACTGCTCGCCTGCCTTCAGTAGGGG < 41bp 1 0.472819246213543 1 0.223111033439636 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FRS2 ENSG00000166225 CDS Human protein_coding chr12:69966003 chr12:69966000 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_27732 0 0 1 0 1 Nucleus 1 0.500231643921131 1 0.999536712157737 hm5C_site_28141 DeepMRMD:1;iRNA_m5C:0.999536712157737 28142 chr13 111290831 111290831 1 + A T LUAD 111290847 + 111290827 111290867 41 CATGATCGCCGAGGTGGGGGCCGCCTTCAGCAAGCTCTTTG CATGTTCGCCGAGGTGGGGGCCGCCTTCAGCAAGCTCTTTG < 41bp 1 0.271589760037309 1 0.164171993732452 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111290847 chr13:111290831 nonsynonymous SNV 0.352 2 5 hm5C_associated_SNPs_27734 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_28142 DeepMRMD:1;iRNA_m5C:0.999536712157815 28143 chrX 110951607 110951607 1 + G T LUAD 110951619 + 110951599 110951639 41 TCTTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAACATATC TCTTTCGGTCCATTTCGGAGCAGGTAAAAGGAAAACATATC < 41bp 1 0.459031485505257 1 0.802473068237305 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110951619 chrX:110951607 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_27736 0 0 1 0 1 Cytosol 1 0.500231643921087 0.39505386352539 0.999536712157825 hm5C_site_28143 DeepMRMD:0.39505386352539;iRNA_m5C:0.999536712157825 28144 chr5 908512 908512 1 + A T LUAD 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCCCGAAATGCCTGCAGGGCGGGCTCCGAGCCATCAGATG < 41bp 1 0.58281512586285 1 0.440504908561707 experiment 0.8343697482743 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908512 nonsynonymous SNV 0.051 2 26 hm5C_associated_SNPs_27738 0 0 0 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_28144 DeepMRMD:1;iRNA_m5C:0.999536712157815 28145 chr1 162557435 162557435 1 + A T LUAD 162557436 + 162557416 162557456 41 CCAACCATTTCTTCACTGTACCATTTCTGAGAGATGTTGTC CCAACCATTTCTTCACTGTTCCATTTCTGAGAGATGTTGTC < 41bp 1 0.0750849293515113 1 0.0750334560871124 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UAP1 ENSG00000117143 CDS Human protein_coding chr1:162557436 chr1:162557435 synonymous SNV . 0 20 hm5C_associated_SNPs_27739 0 0 1 0 1 Ribosome 1 0.500231643921701 1 0.999536712156599 hm5C_site_28145 DeepMRMD:1;iRNA_m5C:0.999536712156599 28146 chr12 1517384 1517384 1 + C T LUAD 1517370 + 1517350 1517390 41 CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAA CGAGGATGACCACTTCAAATCCTCCCATTCCAATTAAACAA < 41bp 1 0.025899080483186 1 0.0870364010334015 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERC1 ENSG00000082805 CDS Human protein_coding chr12:1517370 chr12:1517384 stopgain 1.000 1 35 hm5C_associated_SNPs_27740 0 0 1 0 2 chromatin 1 0.50023164392109 1 0.999536712157819 hm5C_site_28146 DeepMRMD:1;iRNA_m5C:0.999536712157819 28147 chr1 55524239 55524239 1 + C T LUAD 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCGTTGCCCGCTGCGCCCCAG < 41bp 1 0.199255158805523 1 0.094695508480072 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524239 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_27741 0 0 1 0 2 Nucleus 1 0.500231643827626 1 0.999536712344749 hm5C_site_28147 DeepMRMD:1;iRNA_m5C:0.999536712344749 28148 chr1 55524239 55524239 1 + C T LUAD 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCGTTGCCCGCTGCGCCCCAGA < 41bp 1 0.319364159423831 1 0.0891713798046112 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524239 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_27742 0 0 1 0 2 Nucleus 1 0.500219315453009 1 0.999561369093981 hm5C_site_28148 DeepMRMD:1;iRNA_m5C:0.999561369093981 28149 chr1 44069399 44069399 1 + G T LUAD 44069418 + 44069398 44069438 41 CGGGCCGACGAGGCGCGGCCCAACACCATAGATTTCGGCAA CTGGCCGACGAGGCGCGGCCCAACACCATAGATTTCGGCAA < 41bp 1 0.406444163777436 1 0.0771441757678986 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44069418 chr1:44069399 nonsynonymous SNV 0.524 3 2 hm5C_associated_SNPs_27743 0 0 1 0 0 Ribosome 1 0.500231644082957 1 0.999536711834087 hm5C_site_28149 DeepMRMD:1;iRNA_m5C:0.999536711834087 28150 chr16 14970223 14970223 1 + C T LUAD 14970220 + 14970200 14970240 41 TTTCTTCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATCGA TTTCTTCCCCTCTTAGAAAGCTGTCCAGGGAAGCTGATCGA < 41bp 1 0.148250777326045 1 0.159753203392029 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14970220 chr16:14970223 synonymous SNV . 0 24 hm5C_associated_SNPs_27744 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_28150 DeepMRMD:1;iRNA_m5C:0.999536712157813 28151 chr16 14970223 14970223 1 + C T LUAD 14970225 + 14970205 14970245 41 TCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATCGAGATCC TCCCCTCTTAGAAAGCTGTCCAGGGAAGCTGATCGAGATCC < 41bp 1 0.600656648792591 1 0.787354469299316 experiment 0.798686702414818 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14970225 chr16:14970223 synonymous SNV . 0 19 hm5C_associated_SNPs_27745 0 0 1 0 1 Nucleus 1 0.500231643924565 0.425291061401368 0.99953671215087 hm5C_site_28151 DeepMRMD:0.425291061401368;iRNA_m5C:0.99953671215087 28152 chrX 55029451 55029451 1 + C A LUAD 55029466 + 55029446 55029486 41 CCATGCGGACCCTGGGAGGCCTGAGCGGCTAGTCTTTAAGA CCATGAGGACCCTGGGAGGCCTGAGCGGCTAGTCTTTAAGA < 41bp 1 0.576437508249702 1 0.34744918346405 experiment 0.847124983500597 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APEX2 ENSG00000169188 CDS Human protein_coding chrX:55029466 chrX:55029451 nonsynonymous SNV 0.383 4 6 hm5C_associated_SNPs_27746 0 0 1 0 2 Ribosome 1 0.500231643921509 1 0.999536712156981 hm5C_site_28152 DeepMRMD:1;iRNA_m5C:0.999536712156981 28153 chr7 142458527 142458527 1 + C A LUAD 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTG < 41bp 1 0.260192125993864 1 0.239372044801712 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458527 nonsynonymous SNV 0.000 2 33 hm5C_associated_SNPs_27747 0 0 0 0 2 Cytosol 1 0.500231639840869 1 0.999536720318262 hm5C_site_28153 DeepMRMD:1;iRNA_m5C:0.999536720318262 28154 chr7 142458527 142458527 1 + C A LUAD 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGG < 41bp 1 0.0906228039022406 1 0.0445879995822906 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458527 nonsynonymous SNV 0.000 2 31 hm5C_associated_SNPs_27748 0 0 0 0 2 Cytosol 1 0.500231643897495 1 0.99953671220501 hm5C_site_28154 DeepMRMD:1;iRNA_m5C:0.99953671220501 28155 chr7 142458527 142458527 1 + C A LUAD 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGGT < 41bp 1 0.136504245314298 1 0.0988940596580505 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458527 nonsynonymous SNV 0.000 2 30 hm5C_associated_SNPs_27749 0 0 0 0 2 Cytosol 1 0.500231635549947 1 0.999536728900106 hm5C_site_28155 DeepMRMD:1;iRNA_m5C:0.999536728900106 28156 chr7 142458527 142458527 1 + C A LUAD 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGGTG < 41bp 1 0.394560944720945 1 0.23293274641037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458527 nonsynonymous SNV 0.000 2 29 hm5C_associated_SNPs_27750 0 0 0 0 2 Cytosol 1 0.500231643729662 1 0.999536712540676 hm5C_site_28156 DeepMRMD:1;iRNA_m5C:0.999536712540676 28157 chr7 142458527 142458527 1 + C A LUAD 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGGTGGT < 41bp 1 0.518864545989826 1 0.681702375411987 experiment 0.962270908020348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458527 nonsynonymous SNV 0.000 2 27 hm5C_associated_SNPs_27751 0 0 0 0 2 Cytosol 1 0.500231643856016 0.636595249176026 0.999536712287968 hm5C_site_28157 DeepMRMD:0.636595249176026;iRNA_m5C:0.999536712287968 28158 chr7 142458527 142458527 1 + C A LUAD 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCATCAAAGAACAGTGGGTGGTATC < 41bp 1 0.649195123553726 1 0.876695036888123 experiment 0.701609752892548 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458527 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_27752 0 0 0 0 2 Cytosol 1 0.500231643921092 0.246609926223754 0.999536712157815 hm5C_site_28158 DeepMRMD:0.246609926223754;iRNA_m5C:0.999536712157815 28159 chr7 142458527 142458527 1 + C A LUAD 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAAAGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.520913295508938 1 0.266944289207458 experiment 0.958173408982124 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458527 nonsynonymous SNV 0.000 2 17 hm5C_associated_SNPs_27753 0 0 0 0 2 Cytosol 1 0.500231643921112 1 0.999536712157775 hm5C_site_28159 DeepMRMD:1;iRNA_m5C:0.999536712157775 28160 chr7 142458527 142458527 1 + C A LUAD 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT AGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.592404396433328 1 0.894213318824768 experiment 0.815191207133344 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458527 nonsynonymous SNV 0.000 2 1 hm5C_associated_SNPs_27754 0 0 0 0 2 Cytosol 1 0.500231643929915 0.211573362350464 0.999536712140169 hm5C_site_28160 DeepMRMD:0.211573362350464;iRNA_m5C:0.999536712140169 28161 chr11 113078026 113078026 1 + C T LUAD 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG GCAGAATATTGTGAATGCCACTGCCAACCTCGGCCAGTCCG < 41bp 1 0.264876565643489 1 0.308107674121857 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078026 synonymous SNV . 0 22 hm5C_associated_SNPs_27755 0 0 0 0 2 Ribosome 1 0.500231643921096 1 0.999536712157809 hm5C_site_28161 DeepMRMD:1;iRNA_m5C:0.999536712157809 28162 chr19 34818678 34818678 1 + A T LUAD 34818689 + 34818669 34818709 41 TTTCCAGGCATATAAGATAGCTCTGGAAAGCTTAGGACACT TTTCCAGGCTTATAAGATAGCTCTGGAAAGCTTAGGACACT < 41bp 1 0.221160909511812 1 0.195571899414062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34818689 chr19:34818678 synonymous SNV . 0 10 hm5C_associated_SNPs_27756 0 0 0 0 2 Cytosol 1 0.500231643921021 1 0.999536712157958 hm5C_site_28162 DeepMRMD:1;iRNA_m5C:0.999536712157958 28163 chr10 5791121 5791121 1 + G C LUAD 5791136 + 5791116 5791156 41 CTTACGTCCAAATCCGAGATCTCCACGGGATCCTCAGGACT CTTACCTCCAAATCCGAGATCTCCACGGGATCCTCAGGACT < 41bp 1 0.539619118890679 1 0.745938658714294 experiment 0.920761762218643 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM208B ENSG00000108021 CDS Human protein_coding chr10:5791136 chr10:5791121 nonsynonymous SNV 0.114 1 6 hm5C_associated_SNPs_27758 0 0 1 0 0 Nucleus 1 0.500231650942901 0.508122682571412 0.999536698114198 hm5C_site_28163 DeepMRMD:0.508122682571412;iRNA_m5C:0.999536698114198 28164 chr21 47929244 47929244 1 + C T LUAD 47929258 + 47929238 47929278 41 CGCCCTCCACTGAAGGAGTTCTTTGTGGATGATTTTGAGGA CGCCCTTCACTGAAGGAGTTCTTTGTGGATGATTTTGAGGA < 41bp 1 0.069513569529665 1 0.0918294489383698 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47929258 chr21:47929244 nonsynonymous SNV 0.980 4 7 hm5C_associated_SNPs_27759 0 0 1 0 2 Cytosol 1 0.500231643916675 1 0.999536712166649 hm5C_site_28164 DeepMRMD:1;iRNA_m5C:0.999536712166649 28165 chr11 61898026 61898026 1 + A T LUAD 61898007 + 61897987 61898027 41 AGTGTTGTCCGCAGGGCGAGCAGAAGGCTTGCCAAGAAGAC AGTGTTGTCCGCAGGGCGAGCAGAAGGCTTGCCAAGAAGTC < 41bp 1 0.608081238781827 1 0.730804026126862 experiment 0.783837522436346 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61898007 chr11:61898026 nonsynonymous SNV 0.348 0 40 hm5C_associated_SNPs_27761 0 0 1 0 1 chromatin 1 0.500231643921092 0.538391947746276 0.999536712157815 hm5C_site_28165 DeepMRMD:0.538391947746276;iRNA_m5C:0.999536712157815 28166 chr11 61898026 61898026 1 + A T LUAD 61898018 + 61897998 61898038 41 CAGGGCGAGCAGAAGGCTTGCCAAGAAGACTGCCGAAGAGC CAGGGCGAGCAGAAGGCTTGCCAAGAAGTCTGCCGAAGAGC < 41bp 1 0.158487807589496 1 0.136153399944305 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61898018 chr11:61898026 nonsynonymous SNV 0.348 0 29 hm5C_associated_SNPs_27762 0 0 1 0 1 chromatin 1 0.500231643919799 1 0.999536712160402 hm5C_site_28166 DeepMRMD:1;iRNA_m5C:0.999536712160402 28167 chr1 154313336 154313336 1 + G T LUAD 154313339 + 154313319 154313359 41 CCCCTGTGCAGTGTGGAGGTCATCCGTCTGGGCCACAGCTA CCCCTGTGCAGTGTGGATGTCATCCGTCTGGGCCACAGCTA < 41bp 1 0.20671814551228 1 0.0483338832855225 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154313339 chr1:154313336 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_27763 0 0 1 0 0 chromatin 1 0.500231643921719 1 0.999536712156563 hm5C_site_28167 DeepMRMD:1;iRNA_m5C:0.999536712156563 28168 chr1 154313336 154313336 1 + G T LUAD 154313342 + 154313322 154313362 41 CTGTGCAGTGTGGAGGTCATCCGTCTGGGCCACAGCTACTT CTGTGCAGTGTGGATGTCATCCGTCTGGGCCACAGCTACTT < 41bp 1 0.195184423099079 1 0.0373550355434418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154313342 chr1:154313336 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_27764 0 0 1 0 0 chromatin 1 0.500231641722915 1 0.999536716554171 hm5C_site_28168 DeepMRMD:1;iRNA_m5C:0.999536716554171 28169 chr16 624190 624190 1 + C G LUAD 624199 + 624179 624219 41 CCTGCACTTTCCCTTCATCCCCATCCAGGTCAAGCAGCTCC CCTGCACTTTCGCTTCATCCCCATCCAGGTCAAGCAGCTCC < 41bp 1 0.0656930845398919 1 0.144646614789963 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:624199 chr16:624190 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_27765 0 0 1 0 0 Ribosome 1 0.500231643923764 1 0.999536712152473 hm5C_site_28169 DeepMRMD:1;iRNA_m5C:0.999536712152473 28170 chr16 624190 624190 1 + C G LUAD 624203 + 624183 624223 41 CACTTTCCCTTCATCCCCATCCAGGTCAAGCAGCTCCTGGC CACTTTCGCTTCATCCCCATCCAGGTCAAGCAGCTCCTGGC < 41bp 1 0.413157435672919 1 0.742486655712128 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:624203 chr16:624190 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_27766 0 0 1 0 0 Ribosome 1 0.500231643921092 0.515026688575744 0.999536712157815 hm5C_site_28170 DeepMRMD:0.515026688575744;iRNA_m5C:0.999536712157815 28171 chr4 57181839 57181839 1 + C T LUAD 57181825 + 57181805 57181845 41 CCGCCAGTCAATGCAAAGTTCTCTATTATGCCTGCCTGGCA CCGCCAGTCAATGCAAAGTTCTCTATTATGCCTGTCTGGCA < 41bp 1 0.526423900194255 1 0.896390795707703 experiment 0.947152199611489 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57181825 chr4:57181839 nonsynonymous SNV 0.993 3 35 hm5C_associated_SNPs_27767 0 0 0 0 0 cytosol 1 0.500231643943658 0.207218408584594 0.999536712112684 hm5C_site_28171 DeepMRMD:0.207218408584594;iRNA_m5C:0.999536712112684 28172 chr19 50099244 50099244 1 + G T LUAD 50099242 + 50099222 50099262 41 CATGGGGGTGGCTGGGGACCCAGCTCCCTGGGAGGCGGCGG CATGGGGGTGGCTGGGGACCCATCTCCCTGGGAGGCGGCGG < 41bp 1 0.281880451608524 1 0.239852011203766 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRR12 ENSG00000126464 CDS Human protein_coding chr19:50099242 chr19:50099244 nonsynonymous SNV 0.918 1 23 hm5C_associated_SNPs_27768 0 0 1 0 0 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28172 DeepMRMD:1;iRNA_m5C:0.999536712157815 28173 chr22 30415499 30415499 1 + G C LUAD 30415519 + 30415499 30415539 41 GACCACAGCCTGTGACAACACAGTGCCTCTGGCCAGCCGGC CACCACAGCCTGTGACAACACAGTGCCTCTGGCCAGCCGGC < 41bp 1 0.327357170549679 1 0.314727127552032 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30415519 chr22:30415499 synonymous SNV . 0 1 hm5C_associated_SNPs_27769 0 0 1 0 1 Ribosome 1 0.500231644217306 1 0.999536711565388 hm5C_site_28173 DeepMRMD:1;iRNA_m5C:0.999536711565388 28174 chr11 113078005 113078005 1 + G A LUAD 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG ACAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG < 41bp 1 0.103434739955246 1 0.131742924451828 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078005 synonymous SNV . 0 1 hm5C_associated_SNPs_27770 0 0 0 0 2 Ribosome 1 0.500231643921176 1 0.999536712157649 hm5C_site_28174 DeepMRMD:1;iRNA_m5C:0.999536712157649 28175 chr12 112915756 112915756 1 + G A LUAD 112915765 + 112915745 112915785 41 GACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGAT GACTTTTGGCGAATGGTGTTCCAAGAAAACTCCCGAGTGAT < 41bp 1 0.224569946697109 1 0.312247276306152 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915765 chr12:112915756 synonymous SNV . 0 12 hm5C_associated_SNPs_27771 0 0 1 0 2 Ribosome 1 0.500231643922752 1 0.999536712154495 hm5C_site_28175 DeepMRMD:1;iRNA_m5C:0.999536712154495 28176 chr8 107754476 107754476 1 + A G LUAD 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGCGTTAGCATCTGAGCCGCTGAAAGTGAGTGATGGC < 41bp 1 0.102801793995433 1 0.0718809366226196 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754476 synonymous SNV . 0 23 hm5C_associated_SNPs_27773 0 0 0 1 2 chromatin 1 0.500215019736769 1 0.999569960526461 hm5C_site_28176 DeepMRMD:1;iRNA_m5C:0.999569960526461 28177 chr8 107754476 107754476 1 + A G LUAD 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGCGTTAGCATCTGAGCCGCTGAAAGTGAGTGATGGCT < 41bp 1 0.186195380529942 1 0.148971855640411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754476 synonymous SNV . 0 22 hm5C_associated_SNPs_27774 0 0 0 1 2 chromatin 1 0.500552455000359 1 0.998895089999282 hm5C_site_28177 DeepMRMD:1;iRNA_m5C:0.998895089999282 28178 chr3 15298613 15298613 1 + C T LUAD 15298607 - 15298587 15298627 41 AACTTAGTGGCCTCGGAGGCCTTTGAAGATGACAGCTGTAG AACTTAGTGGCCTCAGAGGCCTTTGAAGATGACAGCTGTAG < 41bp 1 0.0977744665777474 1 0.0564142465591431 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3BP5 ENSG00000131370 CDS Human protein_coding chr3:15298607 chr3:15298613 synonymous SNV . 0 15 hm5C_associated_SNPs_27775 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_28178 DeepMRMD:1;iRNA_m5C:0.999536712157814 28179 chr8 42977938 42977938 1 + C T LUAD 42977935 + 42977915 42977955 41 GACTCCCTCAGAAAGACCCACTGCCCAGGACGTTCTGGAGA GACTCCCTCAGAAAGACCCACTGTCCAGGACGTTCTGGAGA < 41bp 1 0.134387483192483 1 0.21906915307045 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POMK ENSG00000185900 CDS Human protein_coding chr8:42977935 chr8:42977938 nonsynonymous SNV 0.698 3 24 hm5C_associated_SNPs_27776 0 0 1 0 0 Ribosome 1 0.500231694900741 1 0.999536610198517 hm5C_site_28179 DeepMRMD:1;iRNA_m5C:0.999536610198517 28180 chrX 118109183 118109183 1 + C A LUAD 118109171 + 118109151 118109191 41 GGCGGCGGAAGAGACGGGGGCCGCCGCGGCTGCGGCGGCCA GGCGGCGGAAGAGACGGGGGCCGCCGCGGCTGAGGCGGCCA < 41bp 1 0.255603455563082 1 0.259411692619324 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109171 chrX:118109183 nonsynonymous SNV 0.011 0 33 hm5C_associated_SNPs_27778 0 0 0 0 0 chromatin 1 0.500231643491944 1 0.999536713016112 hm5C_site_28180 DeepMRMD:1;iRNA_m5C:0.999536713016112 28181 chrX 118109183 118109183 1 + C A LUAD 118109172 + 118109152 118109192 41 GCGGCGGAAGAGACGGGGGCCGCCGCGGCTGCGGCGGCCAC GCGGCGGAAGAGACGGGGGCCGCCGCGGCTGAGGCGGCCAC < 41bp 1 0.670053892871263 1 0.612583994865417 experiment 0.659892214257475 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109172 chrX:118109183 nonsynonymous SNV 0.011 0 32 hm5C_associated_SNPs_27779 0 0 0 0 0 chromatin 1 0.500231643921092 0.774832010269166 0.999536712157815 hm5C_site_28181 DeepMRMD:0.774832010269166;iRNA_m5C:0.999536712157815 28182 chrX 118109183 118109183 1 + C A LUAD 118109186 + 118109166 118109206 41 GGGGGCCGCCGCGGCTGCGGCGGCCACCGAGGTGTGGGACG GGGGGCCGCCGCGGCTGAGGCGGCCACCGAGGTGTGGGACG < 41bp 1 0.571920709604567 1 0.856955230236053 experiment 0.856158580790866 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109186 chrX:118109183 nonsynonymous SNV 0.011 0 18 hm5C_associated_SNPs_27782 0 0 0 0 0 chromatin 1 0.500231628103167 0.286089539527894 0.999536743793665 hm5C_site_28182 DeepMRMD:0.286089539527894;iRNA_m5C:0.999536743793665 28183 chrX 118109183 118109183 1 + C A LUAD 118109189 + 118109169 118109209 41 GGCCGCCGCGGCTGCGGCGGCCACCGAGGTGTGGGACGGCT GGCCGCCGCGGCTGAGGCGGCCACCGAGGTGTGGGACGGCT < 41bp 1 0.0985467311672358 1 0.428783476352692 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109189 chrX:118109183 nonsynonymous SNV 0.011 0 15 hm5C_associated_SNPs_27783 0 0 0 0 0 chromatin 1 0.500231651953364 1 0.999536696093272 hm5C_site_28183 DeepMRMD:1;iRNA_m5C:0.999536696093272 28184 chrX 118109183 118109183 1 + C A LUAD 118109190 + 118109170 118109210 41 GCCGCCGCGGCTGCGGCGGCCACCGAGGTGTGGGACGGCTT GCCGCCGCGGCTGAGGCGGCCACCGAGGTGTGGGACGGCTT < 41bp 1 0.58153827107837 1 0.162853062152863 experiment 0.836923457843259 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118109190 chrX:118109183 nonsynonymous SNV 0.011 0 14 hm5C_associated_SNPs_27784 0 0 0 0 0 chromatin 1 0.500231643780488 1 0.999536712439024 hm5C_site_28184 DeepMRMD:1;iRNA_m5C:0.999536712439024 28185 chrX 73046540 73046540 1 + G T LUAD 73046526 - 73046506 73046546 41 TGGAGGCCCATGACCCAGAACCCAGGAAGGATAGAAGCTTG TGGAGGACCATGACCCAGAACCCAGGAAGGATAGAAGCTTG < 41bp 1 0.234893175634283 1 0.242254137992859 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046526 chrX:73046540 . . 0 7 hm5C_associated_SNPs_27785 0 0 1 1 0 unknown 1 0.500222745637688 1 0.999554508724624 hm5C_site_28185 DeepMRMD:1;iRNA_m5C:0.999554508724624 28186 chrX 73046540 73046540 1 + G T LUAD 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA GGAATCTGGAGGACCATGACCCAGAACCCAGGAAGGATAGA < 41bp 1 0.270798992888634 1 0.367590129375458 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046540 . . 0 13 hm5C_associated_SNPs_27786 0 0 1 1 0 unknown 1 0.500231643916315 1 0.999536712167369 hm5C_site_28186 DeepMRMD:1;iRNA_m5C:0.999536712167369 28187 chrX 73046540 73046540 1 + G T LUAD 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CGGAATCTGGAGGACCATGACCCAGAACCCAGGAAGGATAG < 41bp 1 0.244199296320732 1 0.128465712070465 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046540 . . 0 14 hm5C_associated_SNPs_27787 0 0 1 1 0 unknown 1 0.500231643921044 1 0.999536712157912 hm5C_site_28187 DeepMRMD:1;iRNA_m5C:0.999536712157912 28188 chrX 73046540 73046540 1 + G T LUAD 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCGGAATCTGGAGGACCATGACCCAGAACCCAGGAA < 41bp 1 0.0759596776059298 1 0.0964268147945404 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046540 . . 0 20 hm5C_associated_SNPs_27788 0 0 1 1 0 unknown 1 0.500231643920812 1 0.999536712158376 hm5C_site_28188 DeepMRMD:1;iRNA_m5C:0.999536712158376 28189 chr1 32623006 32623006 1 + G A LUAD 32623004 + 32622984 32623024 41 TTTCTGATGATTCTGACCTGCAGTTAGCAACCACACAGAAA TTTCTGATGATTCTGACCTGCAATTAGCAACCACACAGAAA < 41bp 1 0.0903376733208552 1 0.0394472479820251 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32623004 chr1:32623006 synonymous SNV . 0 23 hm5C_associated_SNPs_27789 0 0 1 0 2 Cytosol 1 0.500390787609394 1 0.999218424781211 hm5C_site_28189 DeepMRMD:1;iRNA_m5C:0.999218424781211 28190 chr15 25222171 25222171 1 + C A LUAD 25222166 + 25222146 25222186 41 TGTCCGAGGAGTTGGGGGACCATCCCAGCAGGTGAGGAACC TGTCCGAGGAGTTGGGGGACCATCCAAGCAGGTGAGGAACC < 41bp 1 0.154255414447056 1 0.302614748477936 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222166 chr15:25222171 nonsynonymous SNV 0.987 2 26 hm5C_associated_SNPs_27790 0 0 1 2 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28190 DeepMRMD:1;iRNA_m5C:0.999536712157815 28191 chr7 150764060 150764060 1 + G T LUAD 150764061 + 150764041 150764081 41 ACCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGG ACCTCGGGCCCGACCCCGGTCCCCCCACAAGCCCCATGAGG < 41bp 1 0.064686191691985 1 0.118854582309723 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764061 chr7:150764060 nonsynonymous SNV 0.994 0 20 hm5C_associated_SNPs_27791 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28191 DeepMRMD:1;iRNA_m5C:0.999536712157815 28192 chr7 150764060 150764060 1 + G T LUAD 150764062 + 150764042 150764082 41 CCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGT CCTCGGGCCCGACCCCGGTCCCCCCACAAGCCCCATGAGGT < 41bp 1 0.0454448409725478 1 0.0907803475856781 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764062 chr7:150764060 nonsynonymous SNV 0.994 0 19 hm5C_associated_SNPs_27792 0 0 1 0 1 Ribosome 1 0.500231643520122 1 0.999536712959756 hm5C_site_28192 DeepMRMD:1;iRNA_m5C:0.999536712959756 28193 chr7 150764060 150764060 1 + G T LUAD 150764063 + 150764043 150764083 41 CTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGTA CTCGGGCCCGACCCCGGTCCCCCCACAAGCCCCATGAGGTA < 41bp 1 0.365779071106711 1 0.194685608148575 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764063 chr7:150764060 nonsynonymous SNV 0.994 0 18 hm5C_associated_SNPs_27793 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28193 DeepMRMD:1;iRNA_m5C:0.999536712157815 28194 chr1 154317158 154317158 1 + G T LUAD 154317162 + 154317142 154317182 41 TCATCCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA TCATCCCGCTCCGTAGTCAACGGCTTCACCTATCAGGACAA < 41bp 1 0.424433581074196 1 0.293994426727295 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317162 chr1:154317158 nonsynonymous SNV 0.229 0 17 hm5C_associated_SNPs_27794 0 0 1 0 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_28194 DeepMRMD:1;iRNA_m5C:0.999536712157818 28195 chr3 51981799 51981799 1 + C G LUAD 51981779 + 51981759 51981799 41 TTGGCATGAAGTGTGGGGCCCACCATGTCGGCTACATGTTC TTGGCATGAAGTGTGGGGCCCACCATGTCGGCTACATGTTG < 41bp 1 0.595157359235199 1 0.158250272274017 experiment 0.809685281529602 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PARP3 ENSG00000041880 CDS Human protein_coding chr3:51981779 chr3:51981799 nonsynonymous SNV 0.996 3 41 hm5C_associated_SNPs_27796 0 0 0 0 1 nucleus 1 0.500231507404647 1 0.999536985190706 hm5C_site_28195 DeepMRMD:1;iRNA_m5C:0.999536985190706 28196 chr1 161179353 161179353 1 + C T LUAD 161179358 + 161179338 161179378 41 CTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAAG CTTGGGGCCATGACCTCTTTCTTCTGGCTGTTTGAAGAAAG < 41bp 1 0.293200239662324 1 0.126297801733017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179358 chr1:161179353 nonsynonymous SNV 0.995 5 16 hm5C_associated_SNPs_27797 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28196 DeepMRMD:1;iRNA_m5C:0.999536712157815 28197 chr11 44129620 44129620 1 + G T LUAD 44129604 + 44129584 44129624 41 ATCTATGCTCTGAAAAAGTACGTGGATGACTTTGGCGTCTC ATCTATGCTCTGAAAAAGTACGTGGATGACTTTGGCTTCTC < 41bp 1 0.483047031641936 1 0.593658208847046 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129604 chr11:44129620 nonsynonymous SNV 0.003 1 37 hm5C_associated_SNPs_27798 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643918776 0.812683582305908 0.999536712162448 hm5C_site_28197 DeepMRMD:0.812683582305908;iRNA_m5C:0.999536712162448 28198 chr4 144442691 144442691 1 + A T LUAD 144442679 + 144442659 144442699 41 TCAGAAGACTCCAACTTCACCTTTGAAGATGAAACCAGGGC TCAGAAGACTCCAACTTCACCTTTGAAGATGATACCAGGGC < 41bp 1 0.142416528947324 1 0.063342809677124 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144442679 chr4:144442691 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_27799 0 0 1 0 1 Nucleus 1 0.500231643921078 1 0.999536712157845 hm5C_site_28198 DeepMRMD:1;iRNA_m5C:0.999536712157845 28199 chr13 111154090 111154090 1 + C T LUAD 111154071 + 111154051 111154091 41 GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCA GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGTA < 41bp 1 0.00830246901075676 1 0.318744242191315 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154071 chr13:111154090 nonsynonymous SNV 0.051 1 40 hm5C_associated_SNPs_27800 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_28199 DeepMRMD:1;iRNA_m5C:0.999536712157814 28200 chr7 128505563 128505563 1 + A T LUAD 128505545 + 128505525 128505565 41 ATCCCCGCTGTCCTGGAGATCCCCTCCAAGGAGCACCCATA ATCCCCGCTGTCCTGGAGATCCCCTCCAAGGAGCACCCTTA < 41bp 1 0.410666959884419 1 0.145013719797134 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP6V1F ENSG00000128524 CDS Human protein_coding chr7:128505545 chr7:128505563 synonymous SNV . 0 39 hm5C_associated_SNPs_27802 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28200 DeepMRMD:1;iRNA_m5C:0.999536712157815 28201 chrX 73046033 73046033 1 + A T LUAD 73046036 - 73046016 73046056 41 TGTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAG TGTGAAGAGATGCTCCAGGCCAAAGAGAAGAATTAGACAAG < 41bp 1 0.186478098286491 1 0.489614218473434 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046036 chrX:73046033 . . 0 24 hm5C_associated_SNPs_27803 0 0 1 0 0 unknown 1 0.500231643963044 1 0.999536712073912 hm5C_site_28201 DeepMRMD:1;iRNA_m5C:0.999536712073912 28202 chr15 99459945 99459945 1 + G C LUAD 99459934 + 99459914 99459954 41 CAGGAAGTATGCCGACGGCACCATCGACATTGAGGAGGTCA CAGGAAGTATGCCGACGGCACCATCGACATTCAGGAGGTCA < 41bp 1 0.0105251311648748 1 0.0782961249351501 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99459934 chr15:99459945 nonsynonymous SNV 0.559 2 32 hm5C_associated_SNPs_27804 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643886179 1 0.999536712227643 hm5C_site_28202 DeepMRMD:1;iRNA_m5C:0.999536712227643 28203 chr8 73921227 73921227 1 + G A LUAD 73921233 + 73921213 73921253 41 CAGAGAGAAACGACGAGGAGCAGTTCGAATGCCAGGAACTG CAGAGAGAAACGACAAGGAGCAGTTCGAATGCCAGGAACTG < 41bp 1 0.289968952196933 1 0.053587943315506 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TERF1 ENSG00000147601 CDS Human protein_coding chr8:73921233 chr8:73921227 nonsynonymous SNV 0.266 1 15 hm5C_associated_SNPs_27805 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28203 DeepMRMD:1;iRNA_m5C:0.999536712157815 28204 chr12 82752422 82752422 1 + C A LUAD 82752435 + 82752415 82752455 41 TGCAGTTCCTGAGGGATGCCCTGTCCATTTCCAATGCACAT TGCAGTTACTGAGGGATGCCCTGTCCATTTCCAATGCACAT < 41bp 1 0.255869946283402 1 0.0768628716468811 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL25 ENSG00000127720 CDS Human protein_coding chr12:82752435 chr12:82752422 nonsynonymous SNV 0.020 4 8 hm5C_associated_SNPs_27806 0 0 1 0 0 cytosol 1 0.500231644043693 1 0.999536711912614 hm5C_site_28204 DeepMRMD:1;iRNA_m5C:0.999536711912614 28205 chr2 71795348 71795348 1 + C A LUAD 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGGAACTGGGGCACAAAGGGCCTCACCTACCCCAAGTTTTC < 41bp 1 0.124569001461698 1 0.0813909471035004 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795348 nonsynonymous SNV 0.992 4 17 hm5C_associated_SNPs_27807 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28205 DeepMRMD:1;iRNA_m5C:0.999536712157815 28206 chr10 120867611 120867611 1 + C G LUAD 120867616 + 120867596 120867636 41 CCCTTTGTCTTTGGTCAGTACAGAAGAACATGGTTTTATAT CCCTTTGTCTTTGGTGAGTACAGAAGAACATGGTTTTATAT < 41bp 1 0.688907167595683 1 0.497815042734146 experiment 0.622185664808634 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM45A ENSG00000119979 CDS Human protein_coding chr10:120867616 chr10:120867611 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_27808 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28206 DeepMRMD:1;iRNA_m5C:0.999536712157815 28207 chrX 77373665 77373665 1 + C A LUAD 77373646 + 77373626 77373666 41 CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGAG < 41bp 1 0.0783190989373745 1 0.052564412355423 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373646 chrX:77373665 synonymous SNV . 0 40 hm5C_associated_SNPs_27809 0 0 1 0 1 Ribosome 1 0.500231650348863 1 0.999536699302274 hm5C_site_28207 DeepMRMD:1;iRNA_m5C:0.999536699302274 28208 chr11 44129611 44129611 1 + G C LUAD 44129604 + 44129584 44129624 41 ATCTATGCTCTGAAAAAGTACGTGGATGACTTTGGCGTCTC ATCTATGCTCTGAAAAAGTACGTGGATCACTTTGGCGTCTC < 41bp 1 0.507122361457345 1 0.537763714790344 experiment 0.98575527708531 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129604 chr11:44129611 nonsynonymous SNV 0.890 3 28 hm5C_associated_SNPs_27810 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920833 0.924472570419312 0.999536712158335 hm5C_site_28208 DeepMRMD:0.924472570419312;iRNA_m5C:0.999536712158335 28209 chr4 52740465 52740465 1 + C G LUAD 52740449 + 52740429 52740469 41 TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGACTGCT TTTTGTAGGAAGTCTGCGGTCTTGCAGTTCTTCAGAGTGCT < 41bp 1 0.233779261945487 1 0.0648183226585388 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52740449 chr4:52740465 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_27811 0 0 1 1 2 Ribosome 1 0.500231683216351 1 0.999536633567298 hm5C_site_28209 DeepMRMD:1;iRNA_m5C:0.999536633567298 28210 chr7 142459634 142459634 1 + G A LUAD 142459625 + 142459605 142459645 41 ATGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGG ATGCCTGCCCTGCCCATCAGCCGCATCCAAGTGAGACTGGG < 41bp 1 0.498776813107735 1 0.297227442264557 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459625 chr7:142459634 synonymous SNV . 0 30 hm5C_associated_SNPs_27812 0 0 0 0 1 Cytosol 1 0.500231643327086 1 0.999536713345828 hm5C_site_28210 DeepMRMD:1;iRNA_m5C:0.999536713345828 28211 chr7 142459634 142459634 1 + G A LUAD 142459626 + 142459606 142459646 41 TGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGA TGCCTGCCCTGCCCATCAGCCGCATCCAAGTGAGACTGGGA < 41bp 1 0.313428124324416 1 0.211621016263962 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459626 chr7:142459634 synonymous SNV . 0 29 hm5C_associated_SNPs_27813 0 0 0 0 1 Cytosol 1 0.500231643920177 1 0.999536712159646 hm5C_site_28211 DeepMRMD:1;iRNA_m5C:0.999536712159646 28212 chr7 142459634 142459634 1 + G A LUAD 142459628 + 142459608 142459648 41 CCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGA CCTGCCCTGCCCATCAGCCGCATCCAAGTGAGACTGGGAGA < 41bp 1 0.262287596169463 1 0.174068331718445 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459628 chr7:142459634 synonymous SNV . 0 27 hm5C_associated_SNPs_27814 0 0 0 0 1 Cytosol 1 0.50023164392108 1 0.99953671215784 hm5C_site_28212 DeepMRMD:1;iRNA_m5C:0.99953671215784 28213 chr7 142459634 142459634 1 + G A LUAD 142459631 + 142459611 142459651 41 GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCA GCCCTGCCCATCAGCCGCATCCAAGTGAGACTGGGAGAGCA < 41bp 1 0.3489157007446 1 0.702178001403809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459631 chr7:142459634 synonymous SNV . 0 24 hm5C_associated_SNPs_27815 0 0 0 0 1 Cytosol 1 0.500231643918561 0.595643997192382 0.999536712162877 hm5C_site_28213 DeepMRMD:0.595643997192382;iRNA_m5C:0.999536712162877 28214 chr2 216197222 216197222 1 + G T LUAD 216197204 + 216197184 216197224 41 TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCC TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCATCC < 41bp 1 0.0492299759286358 1 0.0804571807384491 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197204 chr2:216197222 nonsynonymous SNV 0.997 4 39 hm5C_associated_SNPs_27817 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_28214 DeepMRMD:1;iRNA_m5C:0.999536712157815 28215 chr2 216197222 216197222 1 + G T LUAD 216197205 + 216197185 216197225 41 TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCCC TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCATCCC < 41bp 1 0.345818310739225 1 0.167264372110367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197205 chr2:216197222 nonsynonymous SNV 0.997 4 38 hm5C_associated_SNPs_27818 0 0 1 0 1 chromatin 1 0.500269000925922 1 0.999461998148156 hm5C_site_28215 DeepMRMD:1;iRNA_m5C:0.999461998148156 28216 chr12 50834321 50834321 1 + G T LUAD 50834317 + 50834297 50834337 41 TATATCACTTTCCAGTCAGACACAGATGCACAACAGGTAAG TATATCACTTTCCAGTCAGACACATATGCACAACAGGTAAG < 41bp 1 0.374805813947963 1 0.238812416791916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LARP4 ENSG00000161813 CDS Human protein_coding chr12:50834317 chr12:50834321 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_27819 0 0 1 0 2 Nucleus 1 0.500238821980749 1 0.999522356038502 hm5C_site_28216 DeepMRMD:1;iRNA_m5C:0.999522356038502 28217 chr14 101419754 101419754 1 + G T LUAD 101419734 + 101419714 101419754 41 TGAGTCATGGACGATGAATACTACGTGTCTGAAACTCTGAG TGAGTCATGGACGATGAATACTACGTGTCTGAAACTCTGAT < 41bp 1 0.52608780161679 1 0.0655112564563751 experiment 0.94782439676642 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419734 chr14:101419754 . . 0 41 hm5C_associated_SNPs_27820 0 0 0 0 0 unknown 1 0.500229836795131 1 0.999540326409738 hm5C_site_28217 DeepMRMD:1;iRNA_m5C:0.999540326409738 28218 chr14 101419754 101419754 1 + G T LUAD 101419742 + 101419722 101419762 41 GGACGATGAATACTACGTGTCTGAAACTCTGAGGTCCAACA GGACGATGAATACTACGTGTCTGAAACTCTGATGTCCAACA < 41bp 1 0.553548243311333 1 0.114060163497925 experiment 0.892903513377335 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419742 chr14:101419754 . . 0 33 hm5C_associated_SNPs_27821 0 0 0 0 0 unknown 1 0.500225941995859 1 0.999548116008281 hm5C_site_28218 DeepMRMD:1;iRNA_m5C:0.999548116008281 28219 chr14 101419754 101419754 1 + G T LUAD 101419748 + 101419728 101419768 41 TGAATACTACGTGTCTGAAACTCTGAGGTCCAACAGAAAAC TGAATACTACGTGTCTGAAACTCTGATGTCCAACAGAAAAC < 41bp 1 0.353492300264761 1 0.11622941493988 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419748 chr14:101419754 . . 0 27 hm5C_associated_SNPs_27822 0 0 0 0 0 unknown 1 0.500219115244582 1 0.999561769510836 hm5C_site_28219 DeepMRMD:1;iRNA_m5C:0.999561769510836 28220 chr14 101419754 101419754 1 + G T LUAD 101419750 + 101419730 101419770 41 AATACTACGTGTCTGAAACTCTGAGGTCCAACAGAAAACAT AATACTACGTGTCTGAAACTCTGATGTCCAACAGAAAACAT < 41bp 1 0.561340430962371 1 0.197221904993057 experiment 0.877319138075258 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419750 chr14:101419754 . . 0 25 hm5C_associated_SNPs_27823 0 0 0 0 0 unknown 1 0.500231643920321 1 0.999536712159358 hm5C_site_28220 DeepMRMD:1;iRNA_m5C:0.999536712159358 28221 chr7 139107013 139107013 1 + G A LUAD 139107012 + 139106992 139107032 41 GAGATCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAAT GAGATCGGAAAGATAAGAAGCAGTCCTATGAGAGTGCTAAT < 41bp 1 0.163225895841925 1 0.350177943706512 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107012 chr7:139107013 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_27824 0 0 1 0 0 unknown 1 0.500231643948125 1 0.99953671210375 hm5C_site_28221 DeepMRMD:1;iRNA_m5C:0.99953671210375 28222 chr7 139107013 139107013 1 + G A LUAD 139107016 + 139106996 139107036 41 TCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCA TCGGAAAGATAAGAAGCAGTCCTATGAGAGTGCTAATGGCA < 41bp 1 0.126564525090279 1 0.15170019865036 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107016 chr7:139107013 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_27825 0 0 1 0 0 unknown 1 0.500231660337129 1 0.999536679325742 hm5C_site_28222 DeepMRMD:1;iRNA_m5C:0.999536679325742 28223 chr7 139107013 139107013 1 + G A LUAD 139107017 + 139106997 139107037 41 CGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAG CGGAAAGATAAGAAGCAGTCCTATGAGAGTGCTAATGGCAG < 41bp 1 0.191703453073067 1 0.084985077381134 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107017 chr7:139107013 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_27826 0 0 1 0 0 unknown 1 0.500231899119226 1 0.999536201761549 hm5C_site_28223 DeepMRMD:1;iRNA_m5C:0.999536201761549 28224 chr7 139107013 139107013 1 + G A LUAD 139107028 + 139107008 139107048 41 GAAGCGGTCCTATGAGAGTGCTAATGGCAGATCAGAAGACA GAAGCAGTCCTATGAGAGTGCTAATGGCAGATCAGAAGACA < 41bp 1 0.317482884653027 1 0.172483146190643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107028 chr7:139107013 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_27827 0 0 1 0 0 unknown 1 0.500231636509728 1 0.999536726980544 hm5C_site_28224 DeepMRMD:1;iRNA_m5C:0.999536726980544 28225 chr20 60348202 60348202 1 + G T LUAD 60348215 + 60348195 60348235 41 TGCCCGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTG TGCCCGATAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTG < 41bp 1 0.0394716588024499 1 0.0189423859119415 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348215 chr20:60348202 nonsynonymous SNV 0.586 4 8 hm5C_associated_SNPs_27828 0 0 0 0 0 exosome 1 0.500231633012144 1 0.999536733975713 hm5C_site_28225 DeepMRMD:1;iRNA_m5C:0.999536733975713 28226 chr20 60348202 60348202 1 + G T LUAD 60348217 + 60348197 60348237 41 CCCGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTGAG CCCGATAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTGAG < 41bp 1 0.158299718430133 1 0.0334049165248871 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348217 chr20:60348202 nonsynonymous SNV 0.586 4 6 hm5C_associated_SNPs_27829 0 0 0 0 0 exosome 1 0.500231503249327 1 0.999536993501346 hm5C_site_28226 DeepMRMD:1;iRNA_m5C:0.999536993501346 28227 chr1 151237896 151237896 1 + C T LUAD 151237878 + 151237858 151237898 41 TTTCCTCCCCAGGAGGTGAACACAGAAAAGCTGACAGCCTT TTTCCTCCCCAGGAGGTGAACACAGAAAAGCTGACAGCTTT < 41bp 1 0.620627334767479 1 0.381638139486313 experiment 0.758745330465042 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237878 chr1:151237896 synonymous SNV . 0 39 hm5C_associated_SNPs_27830 0 0 0 0 1 Ribosome 1 0.500231643870559 1 0.999536712258882 hm5C_site_28227 DeepMRMD:1;iRNA_m5C:0.999536712258882 28228 chr16 46960903 46960903 1 + G A LUAD 46960906 + 46960886 46960926 41 AGACTGGCATCTGTGTCGTGCCCGGCAGTGGCTTTGGGCAG AGACTGGCATCTGTGTCATGCCCGGCAGTGGCTTTGGGCAG < 41bp 1 0.440644537985526 1 0.131890505552292 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPT2 ENSG00000166123 CDS Human protein_coding chr16:46960906 chr16:46960903 nonsynonymous SNV 0.852 4 18 hm5C_associated_SNPs_27831 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28228 DeepMRMD:1;iRNA_m5C:0.999536712157815 28229 chr1 183502906 183502906 1 + A G LUAD 183502902 + 183502882 183502922 41 CCTCTTCCAGCAGTCAAGGTCTCCATGGACTGGCTAAGACT CCTCTTCCAGCAGTCAAGGTCTCCGTGGACTGGCTAAGACT < 41bp 1 0.637375408889937 1 0.911670506000519 experiment 0.725249182220126 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SMG7 ENSG00000116698 CDS Human protein_coding chr1:183502902 chr1:183502906 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_27832 0 0 1 0 1 Cytosol 1 0.500231643921119 0.176658987998962 0.999536712157762 hm5C_site_28229 DeepMRMD:0.176658987998962;iRNA_m5C:0.999536712157762 28230 chr6 20402610 20402610 1 + C T LUAD 20402600 + 20402580 20402620 41 AGCCAGCCCCGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCG AGCCAGCCCCGGCTTCGCCGCCGCCGCCGCTGCTGCCGCCG < 41bp 1 0.310505353486371 1 0.506156921386719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402600 chr6:20402610 synonymous SNV 0.188 0 31 hm5C_associated_SNPs_27833 0 0 1 0 0 Cytosol 1 0.500231643921092 0.987686157226562 0.999536712157815 hm5C_site_28230 DeepMRMD:0.987686157226562;iRNA_m5C:0.999536712157815 28231 chr6 20402610 20402610 1 + C T LUAD 20402603 + 20402583 20402623 41 CAGCCCCGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCC CAGCCCCGGCTTCGCCGCCGCCGCCGCTGCTGCCGCCGCCC < 41bp 1 0.271353864766497 1 0.44832307100296 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402603 chr6:20402610 synonymous SNV 0.188 0 28 hm5C_associated_SNPs_27835 0 0 1 0 0 Cytosol 1 0.500231644059639 1 0.999536711880723 hm5C_site_28231 DeepMRMD:1;iRNA_m5C:0.999536711880723 28232 chr6 20402610 20402610 1 + C T LUAD 20402606 + 20402586 20402626 41 CCCCGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGG CCCCGGCTTCGCCGCCGCCGCCGCTGCTGCCGCCGCCCCGG < 41bp 1 0.501471767121656 1 0.678372502326965 experiment 0.997056465756687 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402606 chr6:20402610 synonymous SNV 0.188 0 25 hm5C_associated_SNPs_27836 0 0 1 0 0 Cytosol 1 0.500231645955282 0.64325499534607 0.999536708089436 hm5C_site_28232 DeepMRMD:0.64325499534607;iRNA_m5C:0.999536708089436 28233 chr6 20402610 20402610 1 + C T LUAD 20402607 + 20402587 20402627 41 CCCGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGG CCCGGCTTCGCCGCCGCCGCCGCTGCTGCCGCCGCCCCGGG < 41bp 1 0.645435906838177 1 0.707731962203979 experiment 0.709128186323646 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402607 chr6:20402610 synonymous SNV 0.188 0 24 hm5C_associated_SNPs_27837 0 0 1 0 0 Cytosol 1 0.500231643921432 0.584536075592042 0.999536712157136 hm5C_site_28233 DeepMRMD:0.584536075592042;iRNA_m5C:0.999536712157136 28234 chr6 20402610 20402610 1 + C T LUAD 20402609 + 20402589 20402629 41 CGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCG CGGCTTCGCCGCCGCCGCCGCTGCTGCCGCCGCCCCGGGCG < 41bp 1 0.682185604333725 1 0.561073184013367 experiment 0.635628791332549 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402609 chr6:20402610 synonymous SNV 0.188 0 22 hm5C_associated_SNPs_27838 0 0 1 0 0 Cytosol 1 0.500231643920182 0.877853631973266 0.999536712159636 hm5C_site_28234 DeepMRMD:0.877853631973266;iRNA_m5C:0.999536712159636 28235 chr6 20402610 20402610 1 + C T LUAD 20402612 + 20402592 20402632 41 CTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGCGT CTTCGCCGCCGCCGCCGCTGCTGCCGCCGCCCCGGGCGCGT < 41bp 1 0.612779082462604 1 0.197890639305115 experiment 0.774441835074791 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402612 chr6:20402610 synonymous SNV 0.188 0 19 hm5C_associated_SNPs_27839 0 0 1 0 0 Cytosol 1 0.500231645915711 1 0.999536708168578 hm5C_site_28235 DeepMRMD:1;iRNA_m5C:0.999536708168578 28236 chr6 20402610 20402610 1 + C T LUAD 20402615 + 20402595 20402635 41 CGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGCGTACA CGCCGCCGCCGCCGCTGCTGCCGCCGCCCCGGGCGCGTACA < 41bp 1 0.273269214531102 1 0.529189944267273 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402615 chr6:20402610 synonymous SNV 0.188 0 16 hm5C_associated_SNPs_27840 0 0 1 0 0 Cytosol 1 0.500231643921092 0.941620111465454 0.999536712157815 hm5C_site_28236 DeepMRMD:0.941620111465454;iRNA_m5C:0.999536712157815 28237 chr6 20402610 20402610 1 + C T LUAD 20402618 + 20402598 20402638 41 CGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGCGTACATCC CGCCGCCGCCGCTGCTGCCGCCGCCCCGGGCGCGTACATCC < 41bp 1 0.276704324922268 1 0.569888472557068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402618 chr6:20402610 synonymous SNV 0.188 0 13 hm5C_associated_SNPs_27842 0 0 1 0 0 Cytosol 1 0.500231643968563 0.860223054885864 0.999536712062874 hm5C_site_28237 DeepMRMD:0.860223054885864;iRNA_m5C:0.999536712062874 28238 chr6 20402610 20402610 1 + C T LUAD 20402619 + 20402599 20402639 41 GCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGCGTACATCCA GCCGCCGCCGCTGCTGCCGCCGCCCCGGGCGCGTACATCCA < 41bp 1 0.430889972748594 1 0.416054487228394 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402619 chr6:20402610 synonymous SNV 0.188 0 12 hm5C_associated_SNPs_27843 0 0 1 0 0 Cytosol 1 0.500231643921103 1 0.999536712157794 hm5C_site_28238 DeepMRMD:1;iRNA_m5C:0.999536712157794 28239 chr7 142460308 142460308 1 + C A LUAD 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCAT < 41bp 1 0.137329047550123 1 0.263428747653961 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460308 nonsynonymous SNV 0.028 5 40 hm5C_associated_SNPs_27844 0 0 0 0 1 Cytosol 1 0.500230424969501 1 0.999539150060998 hm5C_site_28239 DeepMRMD:1;iRNA_m5C:0.999539150060998 28240 chr7 142460308 142460308 1 + C A LUAD 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCATG < 41bp 1 0.348597469688818 1 0.313579827547073 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460308 nonsynonymous SNV 0.028 5 39 hm5C_associated_SNPs_27845 0 0 0 0 1 Cytosol 1 0.500231644253737 1 0.999536711492526 hm5C_site_28240 DeepMRMD:1;iRNA_m5C:0.999536711492526 28241 chr7 142460308 142460308 1 + C A LUAD 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCATGG < 41bp 1 0.424543525131812 1 0.341379880905151 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460308 nonsynonymous SNV 0.028 5 38 hm5C_associated_SNPs_27846 0 0 0 0 1 Cytosol 1 0.500231827636965 1 0.99953634472607 hm5C_site_28241 DeepMRMD:1;iRNA_m5C:0.99953634472607 28242 chr7 142460308 142460308 1 + C A LUAD 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGTGCATGGATGC < 41bp 1 0.335707316450229 1 0.411076724529266 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460308 nonsynonymous SNV 0.028 5 34 hm5C_associated_SNPs_27847 0 0 0 0 1 Cytosol 1 0.500946748664128 1 0.998106502671745 hm5C_site_28242 DeepMRMD:1;iRNA_m5C:0.998106502671745 28243 chr7 142460308 142460308 1 + C A LUAD 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGCATGGATGCTCCT < 41bp 1 0.65855889590216 1 0.232142150402069 experiment 0.682882208195681 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460308 nonsynonymous SNV 0.028 5 30 hm5C_associated_SNPs_27848 0 0 0 0 1 Cytosol 1 0.500231725886796 1 0.999536548226409 hm5C_site_28243 DeepMRMD:1;iRNA_m5C:0.999536548226409 28244 chr7 142460308 142460308 1 + C A LUAD 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCATGGATGCTCCTGTG < 41bp 1 0.312817481658518 1 0.130382061004639 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460308 nonsynonymous SNV 0.028 5 27 hm5C_associated_SNPs_27849 0 0 0 0 1 Cytosol 1 0.500231524094951 1 0.999536951810098 hm5C_site_28244 DeepMRMD:1;iRNA_m5C:0.999536951810098 28245 chr7 142460308 142460308 1 + C A LUAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCATGGATGCTCCTGTGCTGAG < 41bp 1 0.466975517697647 1 0.16638508439064 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460308 nonsynonymous SNV 0.028 5 22 hm5C_associated_SNPs_27850 0 0 0 0 1 Cytosol 1 0.500231807913765 1 0.999536384172469 hm5C_site_28245 DeepMRMD:1;iRNA_m5C:0.999536384172469 28246 chr7 142460308 142460308 1 + C A LUAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCATGGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.418166233970065 1 0.130096703767776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460308 nonsynonymous SNV 0.028 5 14 hm5C_associated_SNPs_27851 0 0 0 0 1 Cytosol 1 0.500231648044189 1 0.999536703911622 hm5C_site_28246 DeepMRMD:1;iRNA_m5C:0.999536703911622 28247 chr7 142460308 142460308 1 + C A LUAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCATGGATGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.193918717738242 1 0.116748154163361 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460308 nonsynonymous SNV 0.028 5 12 hm5C_associated_SNPs_27852 0 0 0 0 1 Cytosol 1 0.500231701951171 1 0.999536596097658 hm5C_site_28247 DeepMRMD:1;iRNA_m5C:0.999536596097658 28248 chr7 142460308 142460308 1 + C A LUAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCATGGATGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.477938198733859 1 0.174109756946564 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460308 nonsynonymous SNV 0.028 5 11 hm5C_associated_SNPs_27853 0 0 0 0 1 Cytosol 1 0.500231645176267 1 0.999536709647465 hm5C_site_28248 DeepMRMD:1;iRNA_m5C:0.999536709647465 28249 chr7 142460308 142460308 1 + C A LUAD 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCATGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.52307300048656 1 0.0483902990818024 experiment 0.95385399902688 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460308 nonsynonymous SNV 0.028 5 6 hm5C_associated_SNPs_27854 0 0 0 0 1 Cytosol 1 0.500423840006988 1 0.999152319986024 hm5C_site_28249 DeepMRMD:1;iRNA_m5C:0.999152319986024 28250 chr7 142460308 142460308 1 + C A LUAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC ATGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.368027615530965 1 0.350231826305389 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460308 nonsynonymous SNV 0.028 5 1 hm5C_associated_SNPs_27855 0 0 0 0 1 Cytosol 1 0.500231644367314 1 0.999536711265371 hm5C_site_28250 DeepMRMD:1;iRNA_m5C:0.999536711265371 28251 chr2 109347334 109347334 1 + G A LUAD 109347326 + 109347306 109347346 41 GAAGAAAACACAGACAAAGCCGTTGAATGTTACAGGGTAAG GAAGAAAACACAGACAAAGCCGTTGAATATTACAGGGTAAG < 41bp 1 0.0699850140326796 1 0.15068507194519 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347326 chr2:109347334 nonsynonymous SNV 0.997 2 29 hm5C_associated_SNPs_27856 0 0 1 0 0 Nucleus 1 0.500228345133202 1 0.999543309733595 hm5C_site_28251 DeepMRMD:1;iRNA_m5C:0.999543309733595 28252 chr3 43389307 43389307 1 + C T LUAD 43389320 + 43389300 43389340 41 GCTTCTCCAGGTACAGTTCACAAACGCTACCACCGGAGGAA GCTTCTCTAGGTACAGTTCACAAACGCTACCACCGGAGGAA < 41bp 1 0.438226005921416 1 0.117023319005966 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNRK ENSG00000163788 CDS Human protein_coding chr3:43389320 chr3:43389307 nonsynonymous SNV 0.009 3 8 hm5C_associated_SNPs_27857 0 0 1 0 0 Cytosol 1 0.500231388612132 1 0.999537222775737 hm5C_site_28252 DeepMRMD:1;iRNA_m5C:0.999537222775737 28253 chr22 29678498 29678498 1 + G A LUAD 29678503 + 29678483 29678523 41 CCCAGGTACCTGGGAGCTACCCCATGCAGCCAGTCACTGCA CCCAGGTACCTGGGAACTACCCCATGCAGCCAGTCACTGCA < 41bp 1 0.381112836306496 1 0.369398057460785 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29678503 chr22:29678498 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_27858 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28253 DeepMRMD:1;iRNA_m5C:0.999536712157815 28254 chr12 69044230 69044230 1 + A T LUAD 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCCTACGATTGAAGATTCTTATAGAA < 41bp 1 0.187077424104063 1 0.100837528705597 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044230 synonymous SNV . 0 25 hm5C_associated_SNPs_27859 0 0 0 0 2 Ribosome 1 0.500231641296701 1 0.999536717406599 hm5C_site_28254 DeepMRMD:1;iRNA_m5C:0.999536717406599 28255 chr12 120899848 120899848 1 + A G LUAD 120899856 - 120899836 120899876 41 TCCATACCAAAGCAGGGGTTCCCCACACTACTTCTCTCCTT TCCATACCAAAGCAGGGGTTCCCCACACCACTTCTCTCCTT < 41bp 1 0.570806074147195 1 0.234200596809387 experiment 0.85838785170561 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF9 ENSG00000111786 CDS Human protein_coding chr12:120899856 chr12:120899848 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_27860 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28255 DeepMRMD:1;iRNA_m5C:0.999536712157815 28256 chr11 122817441 122817441 1 + G T LUAD 122817446 + 122817426 122817466 41 AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA AGCCGTAGCAATTCTTAAGGCTATCTGTTTCAACTGGAAAA < 41bp 1 0.0970148988781705 1 0.0526951551437378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817446 chr11:122817441 stopgain 0.993 1 16 hm5C_associated_SNPs_27861 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28256 DeepMRMD:1;iRNA_m5C:0.999536712157815 28257 chr6 24423250 24423250 1 + G A LUAD 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTGGACAACAGCTAGAAGCTCCATTGCCT < 41bp 1 0.544319083734345 1 0.0709159374237061 experiment 0.911361832531309 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423250 nonsynonymous SNV 0.979 3 19 hm5C_associated_SNPs_27862 0 0 1 0 2 Ribosome 1 0.500231667731052 1 0.999536664537895 hm5C_site_28257 DeepMRMD:1;iRNA_m5C:0.999536664537895 28258 chr3 49060179 49060179 1 + C T LUAD 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAAGACAGCTTTTCCCTCTTTTGGTTGCTGGAGCCC < 41bp 1 0.44821467824457 1 0.439153492450714 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060179 synonymous SNV . 0 26 hm5C_associated_SNPs_27863 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28258 DeepMRMD:1;iRNA_m5C:0.999536712157815 28259 chr19 50027842 50027842 1 + A G LUAD 50027862 + 50027842 50027882 41 ACCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG GCCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG < 41bp 1 0.525964403078459 1 0.707493603229523 experiment 0.948071193843083 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCGRT ENSG00000104870 CDS Human protein_coding chr19:50027862 chr19:50027842 nonsynonymous SNV 0.994 3 1 hm5C_associated_SNPs_27864 0 0 1 1 1 Endoplasmic reticulum 1 0.500231409287616 0.585012793540954 0.999537181424769 hm5C_site_28259 DeepMRMD:0.585012793540954;iRNA_m5C:0.999537181424769 28260 chr1 22816582 22816582 1 + C G LUAD 22816595 + 22816575 22816615 41 CCAGCCTCCTGTTCAAAACCCTGCTGGATAACACAGATACC CCAGCCTGCTGTTCAAAACCCTGCTGGATAACACAGATACC < 41bp 1 0.302805237817254 1 0.431686848402023 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22816595 chr1:22816582 synonymous SNV . 0 8 hm5C_associated_SNPs_27865 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28260 DeepMRMD:1;iRNA_m5C:0.999536712157815 28261 chr9 134350175 134350175 1 + G C LUAD 134350189 + 134350169 134350209 41 GGTGTTGAGCGGGAGACACCCCGGGAGGGGACGGCCTTTAA GGTGTTCAGCGGGAGACACCCCGGGAGGGGACGGCCTTTAA < 41bp 1 0.625086527152662 1 0.828675091266632 experiment 0.749826945694676 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134350189 chr9:134350175 nonsynonymous SNV 0.004 1 7 hm5C_associated_SNPs_27866 0 0 1 0 0 Nucleus 1 0.50023164400663 0.342649817466736 0.99953671198674 hm5C_site_28261 DeepMRMD:0.342649817466736;iRNA_m5C:0.99953671198674 28262 chrX 153780355 153780355 1 + C A LUAD 153780337 + 153780317 153780357 41 GGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGC GGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGAGC < 41bp 1 0.0632389968665864 1 0.0816952884197235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IKBKG ENSG00000073009 CDS Human other chrX:153780337 chrX:153780355 synonymous SNV . 0 39 hm5C_associated_SNPs_27867 0 0 1 0 1 chromatin 1 0.500231643921104 1 0.999536712157792 hm5C_site_28262 DeepMRMD:1;iRNA_m5C:0.999536712157792 28263 chrX 107807133 107807133 1 + C A LUAD 107807137 + 107807117 107807157 41 TGATGGAATTCCAGGGCCACCAGGACCAAAAGGAATCAGAG TGATGGAATTCCAGGGACACCAGGACCAAAAGGAATCAGAG < 41bp 1 0.551753740514038 1 0.663913726806641 experiment 0.896492518971924 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107807137 chrX:107807133 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_27868 0 0 1 0 0 Ribosome 1 0.500231643921092 0.672172546386718 0.999536712157815 hm5C_site_28263 DeepMRMD:0.672172546386718;iRNA_m5C:0.999536712157815 28264 chr13 115090570 115090570 1 + A C LUAD 115090577 + 115090557 115090597 41 CCAGTGTCTCCAGAGCTTCGCAAACCCGGCCCACCACTATC CCAGTGTCTCCAGCGCTTCGCAAACCCGGCCCACCACTATC < 41bp 1 0.270038048757439 1 0.0909949243068695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115090577 chr13:115090570 nonsynonymous SNV 0.995 4 14 hm5C_associated_SNPs_27869 0 0 1 0 0 nucleus 1 0.50023164392111 1 0.999536712157781 hm5C_site_28264 DeepMRMD:1;iRNA_m5C:0.999536712157781 28265 chr1 145663206 145663206 1 + C G LUAD 145663218 + 145663198 145663238 41 TTTAGACCCTTTCTAAGTAGCAGTCCACTGGACCAAGATAA TTTAGACCGTTTCTAAGTAGCAGTCCACTGGACCAAGATAA < 41bp 1 0.0725401530562562 1 0.159899920225143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663218 chr1:145663206 synonymous SNV . 0 9 hm5C_associated_SNPs_27870 0 0 1 0 1 Nucleus 1 0.500231643923333 1 0.999536712153334 hm5C_site_28265 DeepMRMD:1;iRNA_m5C:0.999536712153334 28266 chr11 34167643 34167643 1 + G A LUAD 34167634 + 34167614 34167654 41 TTTTGATTTTTCTCTAGTGACAAGAAAAGGAAGTTAGAGGC TTTTGATTTTTCTCTAGTGACAAGAAAAGAAAGTTAGAGGC < 41bp 1 0.678463524583384 1 0.429255723953247 experiment 0.643072950833232 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34167634 chr11:34167643 synonymous SNV . 0 30 hm5C_associated_SNPs_27871 0 0 1 0 1 chromatin 1 0.500231584260475 1 0.99953683147905 hm5C_site_28266 DeepMRMD:1;iRNA_m5C:0.99953683147905 28267 chr9 96427980 96427980 1 + C G LUAD 96427976 + 96427956 96427996 41 CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCGACGAGCC CTTCTGCCCTAGCTCCAAGGCTCTGAGGCCCCCGACGAGCC < 41bp 1 0.363211997510366 1 0.319164365530014 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96427976 chr9:96427980 synonymous SNV . 0 25 hm5C_associated_SNPs_27872 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_28267 DeepMRMD:1;iRNA_m5C:0.999536712157815 28268 chr4 89574133 89574133 1 + G T LUAD 89574130 + 89574110 89574150 41 GGTCCCTGGAGGGGATCCCACTGGCTCAGGTGGCTGCCGGA GGTCCCTGGAGGGGATCCCACTGTCTCAGGTGGCTGCCGGA < 41bp 1 0.502547565378716 1 0.225073516368866 experiment 0.994904869242567 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HERC3 ENSG00000138641 CDS Human protein_coding chr4:89574130 chr4:89574133 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_27874 0 0 0 0 0 Ribosome 1 0.500231643852301 1 0.999536712295397 hm5C_site_28268 DeepMRMD:1;iRNA_m5C:0.999536712295397 28269 chr9 37430611 37430611 1 + G A LUAD 37430599 + 37430579 37430619 41 GGACTCTGCAACAAGGACTTCTTCCAGAAGATGAAGGAAAC GGACTCTGCAACAAGGACTTCTTCCAGAAGATAAAGGAAAC < 41bp 1 0.0911362893109481 1 0.116466492414474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37430599 chr9:37430611 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_27875 0 0 1 0 1 Ribosome 1 0.500231643921081 1 0.999536712157837 hm5C_site_28269 DeepMRMD:1;iRNA_m5C:0.999536712157837 28270 chr12 57626980 57626980 1 + A T LUAD 57626998 + 57626978 57627018 41 CTACCGGAAAGGGGTGAAGGCTGTGGACCCCAAGACTGGCC CTTCCGGAAAGGGGTGAAGGCTGTGGACCCCAAGACTGGCC < 41bp 1 0.668096020222403 1 0.367713093757629 experiment 0.663807959555193 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626998 chr12:57626980 nonsynonymous SNV 0.998 0 3 hm5C_associated_SNPs_27876 0 0 1 0 1 Cytosol 1 0.500231643917422 1 0.999536712165156 hm5C_site_28270 DeepMRMD:1;iRNA_m5C:0.999536712165156 28271 chr2 220366640 220366640 1 + G T LUAD 220366650 + 220366630 220366670 41 CCAGATCCTGGCTGGGAGCCCCGAGGCATTCTTCGTGCTCA CCAGATCCTGTCTGGGAGCCCCGAGGCATTCTTCGTGCTCA < 41bp 1 0.481088142870738 1 0.292835235595703 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366650 chr2:220366640 nonsynonymous SNV 0.991 1 11 hm5C_associated_SNPs_27877 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_28271 DeepMRMD:1;iRNA_m5C:0.999536712157815 28272 chr19 49968019 49968019 1 + G T LUAD 49968003 + 49967983 49968023 41 CCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCAGGTGA CCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCATGTGA < 41bp 1 0.262369924670498 1 0.0770179927349091 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968003 chr19:49968019 nonsynonymous SNV 0.846 0 37 hm5C_associated_SNPs_27878 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28272 DeepMRMD:1;iRNA_m5C:0.999536712157815 28273 chr19 49968019 49968019 1 + G T LUAD 49968004 + 49967984 49968024 41 CTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCAGGTGAG CTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCATGTGAG < 41bp 1 0.515016160099612 1 0.478860944509506 experiment 0.969967679800777 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968004 chr19:49968019 nonsynonymous SNV 0.846 0 36 hm5C_associated_SNPs_27879 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28273 DeepMRMD:1;iRNA_m5C:0.999536712157815 28274 chr19 49968019 49968019 1 + G T LUAD 49968015 + 49967995 49968035 41 CGGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGC CGGCTGGGCCTGAAATAGGGCCCATGTGAGTCGTTGGGGGC < 41bp 1 0.103017834602064 1 0.155975908041 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968015 chr19:49968019 nonsynonymous SNV 0.846 0 25 hm5C_associated_SNPs_27880 0 0 1 0 1 Ribosome 1 0.500231643920304 1 0.999536712159393 hm5C_site_28274 DeepMRMD:1;iRNA_m5C:0.999536712159393 28275 chr19 49968019 49968019 1 + G T LUAD 49968016 + 49967996 49968036 41 GGCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCC GGCTGGGCCTGAAATAGGGCCCATGTGAGTCGTTGGGGGCC < 41bp 1 0.0672045060796165 1 0.16939714550972 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968016 chr19:49968019 nonsynonymous SNV 0.846 0 24 hm5C_associated_SNPs_27881 0 0 1 0 1 Ribosome 1 0.500231643869702 1 0.999536712260596 hm5C_site_28275 DeepMRMD:1;iRNA_m5C:0.999536712260596 28276 chr19 49968019 49968019 1 + G T LUAD 49968017 + 49967997 49968037 41 GCTGGGCCTGAAATAGGGCCCAGGTGAGTCGTTGGGGGCCA GCTGGGCCTGAAATAGGGCCCATGTGAGTCGTTGGGGGCCA < 41bp 1 0.340958609498835 1 0.19001516699791 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49968017 chr19:49968019 nonsynonymous SNV 0.846 0 23 hm5C_associated_SNPs_27882 0 0 1 0 1 Ribosome 1 0.500231643921087 1 0.999536712157826 hm5C_site_28276 DeepMRMD:1;iRNA_m5C:0.999536712157826 28277 chr20 2844844 2844844 1 + G A LUAD 2844855 + 2844835 2844875 41 ATGAGCCACGCTCAGGGGAGCAGGTACCCCTTCTCCTAAAG ATGAGCCACACTCAGGGGAGCAGGTACCCCTTCTCCTAAAG < 41bp 1 0.423240711716761 1 0.429373681545258 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844855 chr20:2844844 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_27883 0 0 1 0 1 chromatin 1 0.500231643921091 1 0.999536712157817 hm5C_site_28277 DeepMRMD:1;iRNA_m5C:0.999536712157817 28278 chr11 2424074 2424074 1 + G T LUAD 2424079 + 2424059 2424099 41 CCCTCACCCCCGTCAGGCCTCCTCCCAGCCACGGTGCAGCC CCCTCACCCCCGTCATGCCTCCTCCCAGCCACGGTGCAGCC < 41bp 1 0.0475254328323795 1 0.067098081111908 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSSC4;TSSC4 ENSG00000184281;ENSG00000184281 exonic;splicing Human other chr11:2424079 chr11:2424074 nonsynonymous SNV 0.023 2 16 hm5C_associated_SNPs_27884 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28278 DeepMRMD:1;iRNA_m5C:0.999536712157815 28279 chr10 16526626 16526626 1 + G T LUAD 16526619 + 16526599 16526639 41 ATTAAATCAGGAGACAGAAGCCATAAAGGAAGAACTGTTGT ATTAAATCAGGAGACAGAAGCCATAAATGAAGAACTGTTGT < 41bp 1 0.221476442042015 1 0.203850030899048 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTER ENSG00000165983 CDS Human protein_coding chr10:16526619 chr10:16526626 nonsynonymous SNV 0.890 0 28 hm5C_associated_SNPs_27885 0 0 0 0 0 chromatin 1 0.500240996711985 1 0.999518006576029 hm5C_site_28279 DeepMRMD:1;iRNA_m5C:0.999518006576029 28280 chr1 7797500 7797500 1 + G A LUAD 7797503 + 7797483 7797523 41 CAGGCTCAGCTGGGACAGAACCCCAGAATCCACTGTCCTGC CAGGCTCAGCTGGGACAAAACCCCAGAATCCACTGTCCTGC < 41bp 1 0.667139205878246 1 0.166254222393036 experiment 0.665721588243507 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7797503 chr1:7797500 synonymous SNV . 0 18 hm5C_associated_SNPs_27886 0 0 0 0 0 Cytosol 1 0.50023164306963 1 0.99953671386074 hm5C_site_28280 DeepMRMD:1;iRNA_m5C:0.99953671386074 28281 chr10 124914503 124914503 1 + C T LUAD 124914484 + 124914464 124914504 41 CAGCCACCCGAGGATGGCATCTCCTCCGTGAAGTTCAGCCC CAGCCACCCGAGGATGGCATCTCCTCCGTGAAGTTCAGCTC < 41bp 1 0.628562379219649 1 0.349489450454712 experiment 0.742875241560702 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control BUB3 ENSG00000154473 CDS Human protein_coding chr10:124914484 chr10:124914503 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_27887 0 0 1 0 2 Ribosome 1 0.500232121738151 1 0.999535756523698 hm5C_site_28281 DeepMRMD:1;iRNA_m5C:0.999535756523698 28282 chr13 113907459 113907459 1 + C T LUAD 113907465 + 113907445 113907485 41 GTGGTCGAAAACTTCAGTGGCAAACTACTTTGGGACATGCT GTGGTCGAAAACTTTAGTGGCAAACTACTTTGGGACATGCT < 41bp 1 0.0618262709877593 1 0.110947489738464 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUL4A ENSG00000139842 CDS Human protein_coding chr13:113907465 chr13:113907459 stopgain 0.217 1 15 hm5C_associated_SNPs_27888 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28282 DeepMRMD:1;iRNA_m5C:0.999536712157815 28283 chr1 228401921 228401921 1 + C T LUAD 228401926 + 228401906 228401946 41 GGCGGTGCGCGTGGGCGACACGGCTATGTTTTGCGTGGAGC GGCGGTGCGCGTGGGTGACACGGCTATGTTTTGCGTGGAGC < 41bp 1 0.189424591313224 1 0.667710185050964 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228401926 chr1:228401921 synonymous SNV . 0 16 hm5C_associated_SNPs_27889 0 0 0 0 1 Ribosome 1 0.5002316439211 0.664579629898072 0.999536712157799 hm5C_site_28283 DeepMRMD:0.664579629898072;iRNA_m5C:0.999536712157799 28284 chr5 139876809 139876809 1 + A G LUAD 139876806 + 139876786 139876826 41 TAGTTCAAGAACCAGATGGACTAATGGTTGCAACTCCAGCT TAGTTCAAGAACCAGATGGACTAGTGGTTGCAACTCCAGCT < 41bp 1 0.283445040713981 1 0.0999603569507599 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139876806 chr5:139876809 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_27890 0 0 1 0 1 unknown 1 0.500231643921046 1 0.999536712157908 hm5C_site_28284 DeepMRMD:1;iRNA_m5C:0.999536712157908 28285 chr20 47896877 47896877 1 + G A LUAD 47896873 + 47896853 47896893 41 CCTGCTGGCATATATGATGACTTAGCTTTTTTCCCCGACAG CCTGCTGGCATATATGATGACTTAACTTTTTTCCCCGACAG < 41bp 1 0.214617326319569 1 0.0583614408969879 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896873 chr20:47896877 . . 0 25 hm5C_associated_SNPs_27891 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28285 DeepMRMD:1;iRNA_m5C:0.999536712157815 28286 chr20 47896877 47896877 1 + G A LUAD 47896878 + 47896858 47896898 41 TGGCATATATGATGACTTAGCTTTTTTCCCCGACAGATCGA TGGCATATATGATGACTTAACTTTTTTCCCCGACAGATCGA < 41bp 1 0.0674879942196715 1 0.0598800778388977 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896878 chr20:47896877 . . 0 20 hm5C_associated_SNPs_27892 0 0 1 0 0 unknown 1 0.500231643438211 1 0.999536713123577 hm5C_site_28286 DeepMRMD:1;iRNA_m5C:0.999536713123577 28287 chr20 47896877 47896877 1 + G A LUAD 47896885 + 47896865 47896905 41 TATGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTT TATGATGACTTAACTTTTTTCCCCGACAGATCGACTATGTT < 41bp 1 0.125581976516087 1 0.0400890111923218 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896885 chr20:47896877 . . 0 13 hm5C_associated_SNPs_27893 0 0 1 0 0 unknown 1 0.500231643982229 1 0.999536712035543 hm5C_site_28287 DeepMRMD:1;iRNA_m5C:0.999536712035543 28288 chr20 47896877 47896877 1 + G A LUAD 47896886 + 47896866 47896906 41 ATGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTG ATGATGACTTAACTTTTTTCCCCGACAGATCGACTATGTTG < 41bp 1 0.406083050771976 1 0.0527702569961548 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896886 chr20:47896877 . . 0 12 hm5C_associated_SNPs_27894 0 0 1 0 0 unknown 1 0.500231643920967 1 0.999536712158065 hm5C_site_28288 DeepMRMD:1;iRNA_m5C:0.999536712158065 28289 chr20 47896877 47896877 1 + G A LUAD 47896887 + 47896867 47896907 41 TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGA TGATGACTTAACTTTTTTCCCCGACAGATCGACTATGTTGA < 41bp 1 0.0574240532200131 1 0.0829007029533386 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896887 chr20:47896877 . . 0 11 hm5C_associated_SNPs_27895 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157813 hm5C_site_28289 DeepMRMD:1;iRNA_m5C:0.999536712157813 28290 chr16 88098906 88098906 1 + G T LUAD 88098888 + 88098868 88098908 41 TCCAGCTTCTAGAGGCCACCCGCATCCCCTGCCTCCTGGCC TCCAGCTTCTAGAGGCCACCCGCATCCCCTGCCTCCTGTCC < 41bp 1 0.244011947922511 1 0.103298455476761 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BANP ENSG00000172530 CDS Human protein_coding chr16:88098888 chr16:88098906 nonsynonymous SNV 0.963 0 39 hm5C_associated_SNPs_27896 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28290 DeepMRMD:1;iRNA_m5C:0.999536712157815 28291 chr6 7594075 7594075 1 + G T LUAD 7594067 + 7594047 7594087 41 ATTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCAT ATTGAGGAAAATGGGCTATACCAAAGAATAAGAGGTACCAT < 41bp 1 0.446514911653862 1 0.225918382406235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594067 chr6:7594075 stopgain 1.000 1 29 hm5C_associated_SNPs_27897 0 0 1 1 1 Ribosome 1 0.500231643920169 1 0.999536712159661 hm5C_site_28291 DeepMRMD:1;iRNA_m5C:0.999536712159661 28292 chr6 7594075 7594075 1 + G T LUAD 7594068 + 7594048 7594088 41 TTGAGGAAAATGGGCTATACCAAAGAAGAAGAGGTACCATA TTGAGGAAAATGGGCTATACCAAAGAATAAGAGGTACCATA < 41bp 1 0.603577405377783 1 0.478912651538849 experiment 0.792845189244435 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7594068 chr6:7594075 stopgain 1.000 1 28 hm5C_associated_SNPs_27898 0 0 1 1 1 Ribosome 1 0.500231643880614 1 0.999536712238772 hm5C_site_28292 DeepMRMD:1;iRNA_m5C:0.999536712238772 28293 chr9 124062262 124062262 1 + G A LUAD 124062243 + 124062223 124062263 41 CACTGCGTCGCGGGGGGCGTCCCAGGCGGGGGCGCCCCAGG CACTGCGTCGCGGGGGGCGTCCCAGGCGGGGGCGCCCCAAG < 41bp 1 0.579402267597098 1 0.860199689865112 experiment 0.841195464805805 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062243 chr9:124062262 synonymous SNV . 0 40 hm5C_associated_SNPs_27899 0 0 1 0 1 Cytosol 1 0.500231643921092 0.279600620269776 0.999536712157815 hm5C_site_28293 DeepMRMD:0.279600620269776;iRNA_m5C:0.999536712157815 28294 chr9 124062262 124062262 1 + G A LUAD 124062255 + 124062235 124062275 41 GGGGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCG GGGGGCGTCCCAGGCGGGGGCGCCCCAAGGGCGGGTGCCCG < 41bp 1 0.467657404422299 1 0.526512503623962 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062255 chr9:124062262 synonymous SNV . 0 28 hm5C_associated_SNPs_27901 0 0 1 0 1 Cytosol 1 0.50023164392109 0.946974992752076 0.99953671215782 hm5C_site_28294 DeepMRMD:0.946974992752076;iRNA_m5C:0.99953671215782 28295 chr9 124062262 124062262 1 + G A LUAD 124062257 + 124062237 124062277 41 GGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAG GGGCGTCCCAGGCGGGGGCGCCCCAAGGGCGGGTGCCCGAG < 41bp 1 0.624868439579306 1 0.650750637054443 experiment 0.750263120841388 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062257 chr9:124062262 synonymous SNV . 0 26 hm5C_associated_SNPs_27902 0 0 1 0 1 Cytosol 1 0.500231643921092 0.698498725891114 0.999536712157815 hm5C_site_28295 DeepMRMD:0.698498725891114;iRNA_m5C:0.999536712157815 28296 chr9 124062262 124062262 1 + G A LUAD 124062258 + 124062238 124062278 41 GGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAGG GGCGTCCCAGGCGGGGGCGCCCCAAGGGCGGGTGCCCGAGG < 41bp 1 0.583793076928708 1 0.839473366737366 experiment 0.832413846142585 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062258 chr9:124062262 synonymous SNV . 0 25 hm5C_associated_SNPs_27903 0 0 1 0 1 Cytosol 1 0.500231679067882 0.321053266525268 0.999536641864236 hm5C_site_28296 DeepMRMD:0.321053266525268;iRNA_m5C:0.999536641864236 28297 chr9 124062262 124062262 1 + G A LUAD 124062259 + 124062239 124062279 41 GCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAGGC GCGTCCCAGGCGGGGGCGCCCCAAGGGCGGGTGCCCGAGGC < 41bp 1 0.65898559023049 1 0.824453473091125 experiment 0.682028819539021 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062259 chr9:124062262 synonymous SNV . 0 24 hm5C_associated_SNPs_27904 0 0 1 0 1 Cytosol 1 0.500231643921092 0.35109305381775 0.999536712157815 hm5C_site_28297 DeepMRMD:0.35109305381775;iRNA_m5C:0.999536712157815 28298 chr9 132630324 132630324 1 + A G LUAD 132630317 + 132630297 132630337 41 TCCTTCGCTGCCTGATGGACCAGCTGCACGAGGAGCTCAAG TCCTTCGCTGCCTGATGGACCAGCTGCGCGAGGAGCTCAAG < 41bp 1 0.420198645859395 1 0.741850078105927 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132630317 chr9:132630324 nonsynonymous SNV 0.985 4 28 hm5C_associated_SNPs_27905 0 0 1 0 1 chromatin 1 0.500231643921091 0.516299843788146 0.999536712157819 hm5C_site_28298 DeepMRMD:0.516299843788146;iRNA_m5C:0.999536712157819 28299 chr9 120476532 120476532 1 + A G LUAD 120476528 + 120476508 120476548 41 CTCCATTTCAGCTCTGCCTTCACTACAGAGACTTTATTCCC CTCCATTTCAGCTCTGCCTTCACTGCAGAGACTTTATTCCC < 41bp 1 0.284418689591607 1 0.0823740661144257 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TLR4 ENSG00000136869 CDS Human protein_coding chr9:120476528 chr9:120476532 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_27906 0 0 0 0 0 cytosol 1 0.500231643832661 1 0.999536712334678 hm5C_site_28299 DeepMRMD:1;iRNA_m5C:0.999536712334678 28300 chr1 10195123 10195123 1 + C G LUAD 10195142 + 10195122 10195162 41 TCAAGTTAGAAACAGTTGATCCCACGTATATTTTTCACCCA TGAAGTTAGAAACAGTTGATCCCACGTATATTTTTCACCCA < 41bp 1 0.0983476020209919 1 0.260007798671722 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10195142 chr1:10195123 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_27908 0 0 1 0 1 Cytosol 1 0.500231045704145 1 0.99953790859171 hm5C_site_28300 DeepMRMD:1;iRNA_m5C:0.99953790859171 28301 chr2 207636950 207636950 1 + A T LUAD 207636939 + 207636919 207636959 41 TGTCCTTTAAGAATAATGATCAACATATTGCAGTCCTGCAA TGTCCTTTAAGAATAATGATCAACATATTGCTGTCCTGCAA < 41bp 1 0.683318686499703 1 0.568081855773926 experiment 0.633362627000594 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207636939 chr2:207636950 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_27909 0 0 1 0 2 Nucleus 1 0.500232579838229 0.863836288452148 0.999534840323543 hm5C_site_28301 DeepMRMD:0.863836288452148;iRNA_m5C:0.999534840323543 28302 chr4 20568908 20568908 1 + G T LUAD 20568888 + 20568868 20568908 41 TTTGAATTAATTTTCAGGTCCTGTGGATGTCAATATTCTAG TTTGAATTAATTTTCAGGTCCTGTGGATGTCAATATTCTAT < 41bp 1 0.0679269282410095 1 0.0936455726623535 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568888 chr4:20568908 nonsynonymous SNV 0.996 2 41 hm5C_associated_SNPs_27910 0 0 1 0 1 Ribosome 1 0.500231646272436 1 0.999536707455128 hm5C_site_28302 DeepMRMD:1;iRNA_m5C:0.999536707455128 28303 chr14 75936060 75936060 1 + G T LUAD 75936062 + 75936042 75936082 41 AGGAGCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTG AGGAGCTGAAGCAGGAGCTGCAGCAGCTCATCCTGATGCTG < 41bp 1 0.686309450727867 1 0.55707985162735 experiment 0.627381098544266 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936062 chr14:75936060 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_27911 0 0 0 0 1 Ribosome 1 0.500231643374942 0.8858402967453 0.999536713250117 hm5C_site_28303 DeepMRMD:0.8858402967453;iRNA_m5C:0.999536713250117 28304 chr14 75936060 75936060 1 + G T LUAD 75936065 + 75936045 75936085 41 AGCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTGAAC AGCTGAAGCAGGAGCTGCAGCAGCTCATCCTGATGCTGAAC < 41bp 1 0.381898812693637 1 0.742269456386566 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936065 chr14:75936060 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_27912 0 0 0 0 1 Ribosome 1 0.500232551087591 0.515461087226868 0.999534897824818 hm5C_site_28304 DeepMRMD:0.515461087226868;iRNA_m5C:0.999534897824818 28305 chr7 142561960 142561960 1 + G T LUAD 142561972 + 142561952 142561992 41 TACCGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC TACCGTCATGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC < 41bp 1 0.667988293405995 1 0.24645671248436 experiment 0.664023413188009 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561972 chr7:142561960 nonsynonymous SNV 0.992 4 9 hm5C_associated_SNPs_27913 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157812 hm5C_site_28305 DeepMRMD:1;iRNA_m5C:0.999536712157812 28306 chr16 30680938 30680938 1 + G A LUAD 30680941 + 30680921 30680961 41 CAGTTCCCCACCTAGGGGCCCTGGCCCAGCTCGGGCTGACA CAGTTCCCCACCTAGGGACCCTGGCCCAGCTCGGGCTGACA < 41bp 1 0.285210837545704 1 0.048780083656311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FBRS ENSG00000156860 CDS Human protein_coding chr16:30680941 chr16:30680938 nonsynonymous SNV 0.997 1 18 hm5C_associated_SNPs_27914 0 0 1 0 0 chromatin 1 0.500231643922846 1 0.999536712154308 hm5C_site_28306 DeepMRMD:1;iRNA_m5C:0.999536712154308 28307 chr4 123814181 123814181 1 + G A LUAD 123814174 - 123814154 123814194 41 AGTGGATGGATCTCAATGACCTGGCGAAGACTGAAAATACA AGTGGATGGATCTTAATGACCTGGCGAAGACTGAAAATACA < 41bp 1 0.654447662427494 1 0.339033782482147 experiment 0.691104675145013 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT6 ENSG00000170917 CDS Human protein_coding chr4:123814174 chr4:123814181 synonymous SNV . 0 14 hm5C_associated_SNPs_27915 0 0 1 0 0 Ribosome 1 0.500232666614554 1 0.999534666770892 hm5C_site_28307 DeepMRMD:1;iRNA_m5C:0.999534666770892 28308 chr10 24832540 24832540 1 + C G LUAD 24832548 + 24832528 24832568 41 GATCATCATTTTCGATGAGCCCATGGACATCCGGTCTGCCT GATCATCATTTTGGATGAGCCCATGGACATCCGGTCTGCCT < 41bp 1 0.108412190410723 1 0.0680843591690063 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24832548 chr10:24832540 nonsynonymous SNV 0.935 4 13 hm5C_associated_SNPs_27917 0 0 0 0 0 Nucleus 1 0.500231643928032 1 0.999536712143936 hm5C_site_28308 DeepMRMD:1;iRNA_m5C:0.999536712143936 28309 chr18 77474845 77474845 1 + G C LUAD 77474860 + 77474840 77474880 41 CAGCAGTGAGTCCGAGGGCACGAAGTCCTCCTCCTCCGCCT CAGCACTGAGTCCGAGGGCACGAAGTCCTCCTCCTCCGCCT < 41bp 1 0.566145544253497 1 0.184742093086243 experiment 0.867708911493006 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77474860 chr18:77474845 nonsynonymous SNV 0.001 0 6 hm5C_associated_SNPs_27918 0 0 1 0 0 chromatin 1 0.500230165409912 1 0.999539669180176 hm5C_site_28309 DeepMRMD:1;iRNA_m5C:0.999539669180176 28310 chr9 135942538 135942538 1 + A T LUAD 135942521 + 135942501 135942541 41 GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTG GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTTCTG < 41bp 1 0.268615839392888 1 0.0505049228668213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942521 chr9:135942538 nonsynonymous SNV 0.275 1 38 hm5C_associated_SNPs_27919 0 0 0 0 1 exosome 1 0.500229249671262 1 0.999541500657476 hm5C_site_28310 DeepMRMD:1;iRNA_m5C:0.999541500657476 28311 chr9 135942538 135942538 1 + A T LUAD 135942522 + 135942502 135942542 41 GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGA GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTTCTGA < 41bp 1 0.403007737305109 1 0.276200920343399 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942522 chr9:135942538 nonsynonymous SNV 0.275 1 37 hm5C_associated_SNPs_27920 0 0 0 0 1 exosome 1 0.50023165252853 1 0.99953669494294 hm5C_site_28311 DeepMRMD:1;iRNA_m5C:0.99953669494294 28312 chr9 135942538 135942538 1 + A T LUAD 135942523 + 135942503 135942543 41 GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGAT GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTTCTGAT < 41bp 1 0.340011092796367 1 0.341963171958923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942523 chr9:135942538 nonsynonymous SNV 0.275 1 36 hm5C_associated_SNPs_27921 0 0 0 0 1 exosome 1 0.500231031365826 1 0.999537937268347 hm5C_site_28312 DeepMRMD:1;iRNA_m5C:0.999537937268347 28313 chr9 135942538 135942538 1 + A T LUAD 135942539 + 135942519 135942559 41 GGCCCAGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGC GGCCCAGTGTCTGAAGGTTTCTGATCCCCGAGCCCTGACGC < 41bp 1 0.651322497455741 1 0.0542872846126556 experiment 0.697355005088518 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942539 chr9:135942538 nonsynonymous SNV 0.275 1 20 hm5C_associated_SNPs_27922 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_28313 DeepMRMD:1;iRNA_m5C:0.999536712157813 28314 chr9 135942538 135942538 1 + A T LUAD 135942544 + 135942524 135942564 41 AGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCC AGTGTCTGAAGGTTTCTGATCCCCGAGCCCTGACGCTGGCC < 41bp 1 0.389419701969068 1 0.0576985478401184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942544 chr9:135942538 nonsynonymous SNV 0.275 1 15 hm5C_associated_SNPs_27923 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28314 DeepMRMD:1;iRNA_m5C:0.999536712157815 28315 chr9 135942538 135942538 1 + A T LUAD 135942546 + 135942526 135942566 41 TGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTA TGTCTGAAGGTTTCTGATCCCCGAGCCCTGACGCTGGCCTA < 41bp 1 0.60015628238278 1 0.492822110652924 experiment 0.799687435234439 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942546 chr9:135942538 nonsynonymous SNV 0.275 1 13 hm5C_associated_SNPs_27925 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28315 DeepMRMD:1;iRNA_m5C:0.999536712157815 28316 chr9 135942538 135942538 1 + A T LUAD 135942547 + 135942527 135942567 41 GTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTAT GTCTGAAGGTTTCTGATCCCCGAGCCCTGACGCTGGCCTAT < 41bp 1 0.635089440733615 1 0.435812652111053 experiment 0.72982111853277 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942547 chr9:135942538 nonsynonymous SNV 0.275 1 12 hm5C_associated_SNPs_27926 0 0 0 0 1 exosome 1 0.500231643921496 1 0.999536712157008 hm5C_site_28316 DeepMRMD:1;iRNA_m5C:0.999536712157008 28317 chr9 135942538 135942538 1 + A T LUAD 135942552 + 135942532 135942572 41 AAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGT AAGGTTTCTGATCCCCGAGCCCTGACGCTGGCCTATAAGGT < 41bp 1 0.136740288842119 1 0.219916731119156 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942552 chr9:135942538 nonsynonymous SNV 0.275 1 7 hm5C_associated_SNPs_27927 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28317 DeepMRMD:1;iRNA_m5C:0.999536712157815 28318 chr9 135942538 135942538 1 + A T LUAD 135942553 + 135942533 135942573 41 AGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG AGGTTTCTGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG < 41bp 1 0.333106097212675 1 0.125101357698441 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942553 chr9:135942538 nonsynonymous SNV 0.275 1 6 hm5C_associated_SNPs_27928 0 0 0 0 1 exosome 1 0.500231639437407 1 0.999536721125185 hm5C_site_28318 DeepMRMD:1;iRNA_m5C:0.999536721125185 28319 chr7 23221741 23221741 1 + C T LUAD 23221740 + 23221720 23221760 41 TTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTG TTCTTCCTTCAAGGCCGGTGCTGCTTTGGAGATCGGTGCTG < 41bp 1 0.62584007368036 1 0.388384103775024 experiment 0.74831985263928 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221740 chr7:23221741 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_27929 0 0 1 3 1 Cytosol 1 0.500231643921663 1 0.999536712156675 hm5C_site_28319 DeepMRMD:1;iRNA_m5C:0.999536712156675 28320 chr10 118314905 118314905 1 + G T LUAD 118314913 + 118314893 118314933 41 ATTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGA ATTTCAGGGTTTTGAATGAGCCAAGTCGTGGGCCACCTAGA < 41bp 1 0.288964658649421 1 0.14572012424469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314913 chr10:118314905 stopgain 0.997 1 13 hm5C_associated_SNPs_27930 0 0 0 0 0 unknown 1 0.50023212814639 1 0.999535743707221 hm5C_site_28320 DeepMRMD:1;iRNA_m5C:0.999535743707221 28321 chr10 118314905 118314905 1 + G T LUAD 118314914 + 118314894 118314934 41 TTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGAT TTTCAGGGTTTTGAATGAGCCAAGTCGTGGGCCACCTAGAT < 41bp 1 0.46915662665295 1 0.42384946346283 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314914 chr10:118314905 stopgain 0.997 1 12 hm5C_associated_SNPs_27931 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28321 DeepMRMD:1;iRNA_m5C:0.999536712157815 28322 chr10 118314905 118314905 1 + G T LUAD 118314919 + 118314899 118314939 41 GGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTT GGGTTTTGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTT < 41bp 1 0.571041868164213 1 0.265408128499985 experiment 0.857916263671574 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314919 chr10:118314905 stopgain 0.997 1 7 hm5C_associated_SNPs_27932 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28322 DeepMRMD:1;iRNA_m5C:0.999536712157815 28323 chr10 118314905 118314905 1 + G T LUAD 118314925 + 118314905 118314945 41 GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCCAAA TGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCCAAA < 41bp 1 0.0990338788686687 1 0.0466810762882233 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314925 chr10:118314905 stopgain 0.997 1 1 hm5C_associated_SNPs_27933 0 0 0 0 0 unknown 1 0.50023164388135 1 0.999536712237299 hm5C_site_28323 DeepMRMD:1;iRNA_m5C:0.999536712237299 28324 chr7 142458475 142458475 1 + A G LUAD 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCC < 41bp 1 0.157841315307715 1 0.198518395423889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458475 nonsynonymous SNV 0.993 5 30 hm5C_associated_SNPs_27934 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28324 DeepMRMD:1;iRNA_m5C:0.999536712157815 28325 chr7 142458475 142458475 1 + A G LUAD 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAA < 41bp 1 0.178210922493265 1 0.254286170005798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458475 nonsynonymous SNV 0.993 5 26 hm5C_associated_SNPs_27935 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28325 DeepMRMD:1;iRNA_m5C:0.999536712157815 28326 chr7 142458475 142458475 1 + A G LUAD 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAAT < 41bp 1 0.0699923913098536 1 0.0786914527416229 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458475 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_27936 0 0 0 0 2 Cytosol 1 0.500231643377046 1 0.999536713245908 hm5C_site_28326 DeepMRMD:1;iRNA_m5C:0.999536713245908 28327 chr7 142458475 142458475 1 + A G LUAD 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAATT < 41bp 1 0.0426137556167088 1 0.088590532541275 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458475 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_27937 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28327 DeepMRMD:1;iRNA_m5C:0.999536712157815 28328 chr7 142458475 142458475 1 + A G LUAD 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAATTC < 41bp 1 0.236324518015918 1 0.0960106253623962 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458475 nonsynonymous SNV 0.993 5 23 hm5C_associated_SNPs_27938 0 0 0 0 2 Cytosol 1 0.500231640775139 1 0.999536718449721 hm5C_site_28328 DeepMRMD:1;iRNA_m5C:0.999536718449721 28329 chr7 142458475 142458475 1 + A G LUAD 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAATTCTGG < 41bp 1 0.19531951763789 1 0.39233934879303 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458475 nonsynonymous SNV 0.993 5 20 hm5C_associated_SNPs_27939 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28329 DeepMRMD:1;iRNA_m5C:0.999536712157815 28330 chr7 142458475 142458475 1 + A G LUAD 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTGCCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.555395079143859 1 0.849021673202515 experiment 0.889209841712283 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458475 nonsynonymous SNV 0.993 5 19 hm5C_associated_SNPs_27940 0 0 0 0 2 Cytosol 1 0.500231643919149 0.30195665359497 0.999536712161702 hm5C_site_28330 DeepMRMD:0.30195665359497;iRNA_m5C:0.999536712161702 28331 chr7 142458475 142458475 1 + A G LUAD 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTGCCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.136363064390398 1 0.062010794878006 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458475 nonsynonymous SNV 0.993 5 12 hm5C_associated_SNPs_27941 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28331 DeepMRMD:1;iRNA_m5C:0.999536712157815 28332 chr7 142458475 142458475 1 + A G LUAD 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTGCCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.322578228023712 1 0.0972315073013306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458475 nonsynonymous SNV 0.993 5 11 hm5C_associated_SNPs_27942 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_28332 DeepMRMD:1;iRNA_m5C:0.999536712157816 28333 chr1 242042435 242042435 1 + C T LUAD 242042447 + 242042427 242042467 41 CAGCAGTTCCGAAGAAAGAGCGATTCCCCCACCTCTTTGCC CAGCAGTTTCGAAGAAAGAGCGATTCCCCCACCTCTTTGCC < 41bp 1 0.184012596648262 1 0.119661122560501 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242042447 chr1:242042435 synonymous SNV . 0 9 hm5C_associated_SNPs_27945 0 0 1 0 0 Nucleus 1 0.50023164468721 1 0.999536710625581 hm5C_site_28333 DeepMRMD:1;iRNA_m5C:0.999536710625581 28334 chr1 161088957 161088957 1 + C G LUAD 161088961 + 161088941 161088981 41 TCTCCTCTTCCTCCTGCGAACTGCCCCTGGTGGCTGTGTGC TCTCCTCTTCCTCCTGGGAACTGCCCCTGGTGGCTGTGTGC < 41bp 1 0.334420966947984 1 0.139046162366867 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NIT1 ENSG00000158793 CDS Human protein_coding chr1:161088961 chr1:161088957 nonsynonymous SNV 0.994 0 17 hm5C_associated_SNPs_27946 0 0 1 0 1 nucleolus 1 0.500231644411126 1 0.999536711177748 hm5C_site_28334 DeepMRMD:1;iRNA_m5C:0.999536711177748 28335 chr8 145151603 145151603 1 + C T LUAD 145151587 + 145151567 145151607 41 TCTACTTCAACCCCTACTTTCCTGGCCAGGCCATTGCCATG TCTACTTCAACCCCTACTTTCCTGGCCAGGCCATTGTCATG < 41bp 1 0.271126506822988 1 0.144103318452835 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151587 chr8:145151603 nonsynonymous SNV 0.981 1 37 hm5C_associated_SNPs_27947 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28335 DeepMRMD:1;iRNA_m5C:0.999536712157815 28336 chr11 5730535 5730535 1 + G T LUAD 5730532 + 5730512 5730552 41 TCTGAATAAAAGGAAGAGCTCTGGGTTTGCTTTTGATCCAA TCTGAATAAAAGGAAGAGCTCTGTGTTTGCTTTTGATCCAA < 41bp 1 0.453777960881886 1 0.158090323209763 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM22 ENSG00000132274 CDS Human protein_coding chr11:5730532 chr11:5730535 nonsynonymous SNV 0.016 2 24 hm5C_associated_SNPs_27948 0 0 0 0 0 Cytosol 1 0.500231758614692 1 0.999536482770615 hm5C_site_28336 DeepMRMD:1;iRNA_m5C:0.999536482770615 28337 chr10 118314708 118314708 1 + C A LUAD 118314712 + 118314692 118314732 41 TTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTGAATT TTGGACCCAGCAGAACATTGCTTTCAGGGCACACCTGAATT < 41bp 1 0.046238853020323 1 0.0282648205757141 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314712 chr10:118314708 nonsynonymous SNV 0.941 5 17 hm5C_associated_SNPs_27949 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28337 DeepMRMD:1;iRNA_m5C:0.999536712157815 28338 chr10 118314708 118314708 1 + C A LUAD 118314721 + 118314701 118314741 41 GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATT GCAGAACATTGCTTTCAGGGCACACCTGAATTAGTCCGATT < 41bp 1 0.291240072959303 1 0.0425239503383636 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314721 chr10:118314708 nonsynonymous SNV 0.941 5 8 hm5C_associated_SNPs_27950 0 0 0 0 0 unknown 1 0.500231644691752 1 0.999536710616495 hm5C_site_28338 DeepMRMD:1;iRNA_m5C:0.999536710616495 28339 chr10 118314708 118314708 1 + C A LUAD 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACATTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG < 41bp 1 0.491327134247469 1 0.0487926602363586 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314708 nonsynonymous SNV 0.941 5 6 hm5C_associated_SNPs_27951 0 0 0 0 0 unknown 1 0.500231643921121 1 0.999536712157758 hm5C_site_28339 DeepMRMD:1;iRNA_m5C:0.999536712157758 28340 chr10 118314708 118314708 1 + C A LUAD 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACATTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC < 41bp 1 0.240016758003195 1 0.314379215240479 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314708 nonsynonymous SNV 0.941 5 4 hm5C_associated_SNPs_27952 0 0 0 0 0 unknown 1 0.500231643923061 1 0.999536712153877 hm5C_site_28340 DeepMRMD:1;iRNA_m5C:0.999536712153877 28341 chr10 118314708 118314708 1 + C A LUAD 118314726 + 118314706 118314746 41 ACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC ACATTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC < 41bp 1 0.692100937455086 1 0.571792244911194 experiment 0.615798125089829 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314726 chr10:118314708 nonsynonymous SNV 0.941 5 3 hm5C_associated_SNPs_27953 0 0 0 0 0 unknown 1 0.500233045414643 0.856415510177612 0.999533909170715 hm5C_site_28341 DeepMRMD:0.856415510177612;iRNA_m5C:0.999533909170715 28342 chr7 98564667 98564667 1 + C T LUAD 98564687 + 98564667 98564707 41 CCTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGATGAT TCTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGATGAT < 41bp 1 0.011046855933054 1 0.0873718559741974 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98564687 chr7:98564667 nonsynonymous SNV 0.991 4 1 hm5C_associated_SNPs_27954 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_28342 DeepMRMD:1;iRNA_m5C:0.999536712157814 28343 chr10 102822842 102822842 1 + C A LUAD 102822848 + 102822828 102822868 41 TCACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCAT TCACTGTGGCACACACGGGGCCCTGCGAATCGGGTACGCAT < 41bp 1 0.0778179377930172 1 0.043243944644928 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822848 chr10:102822842 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_27955 0 0 0 0 1 nucleus 1 0.500222950075832 1 0.999554099848337 hm5C_site_28343 DeepMRMD:1;iRNA_m5C:0.999554099848337 28344 chr10 102822842 102822842 1 + C A LUAD 102822849 + 102822829 102822869 41 CACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATG CACTGTGGCACACACGGGGCCCTGCGAATCGGGTACGCATG < 41bp 1 0.0658909176039869 1 0.0550599992275238 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822849 chr10:102822842 nonsynonymous SNV 0.998 0 14 hm5C_associated_SNPs_27956 0 0 0 0 1 nucleus 1 0.500231643673665 1 0.999536712652669 hm5C_site_28344 DeepMRMD:1;iRNA_m5C:0.999536712652669 28345 chr10 102822842 102822842 1 + C A LUAD 102822850 + 102822830 102822870 41 ACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATGG ACTGTGGCACACACGGGGCCCTGCGAATCGGGTACGCATGG < 41bp 1 0.552624572621167 1 0.0886781215667725 experiment 0.894750854757667 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822850 chr10:102822842 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_27957 0 0 0 0 1 nucleus 1 0.500231643499767 1 0.999536713000467 hm5C_site_28345 DeepMRMD:1;iRNA_m5C:0.999536713000467 28346 chr17 78350164 78350164 1 + C T LUAD 78350171 + 78350151 78350191 41 TCCTGATATCAGCCGTTTTGCAACATCGCTCGTGGACAATT TCCTGATATCAGCTGTTTTGCAACATCGCTCGTGGACAATT < 41bp 1 0.189987635145485 1 0.186686247587204 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78350171 chr17:78350164 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_27958 0 0 1 0 1 Nucleus 1 0.500231643921821 1 0.999536712156357 hm5C_site_28346 DeepMRMD:1;iRNA_m5C:0.999536712156357 28347 chr15 22933576 22933576 1 + A G LUAD 22933564 + 22933544 22933584 41 TCTTTTTGTTTTCAAAGGGCCGCTCAGTTTTTACGTAAAAT TCTTTTTGTTTTCAAAGGGCCGCTCAGTTTTTGCGTAAAAT < 41bp 1 0.023396885405211 1 0.0872916877269745 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22933564 chr15:22933576 synonymous SNV . 0 33 hm5C_associated_SNPs_27959 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28347 DeepMRMD:1;iRNA_m5C:0.999536712157815 28348 chr8 99102061 99102061 1 + C A LUAD 99102068 + 99102048 99102088 41 CAGAAGTATTGGACAGAAGTCAGCTTGTGGAAAAGCCTGTT CAGAAGTATTGGAAAGAAGTCAGCTTGTGGAAAAGCCTGTT < 41bp 1 0.460178442250419 1 0.370922446250916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERICH5 ENSG00000177459 CDS Human protein_coding chr8:99102068 chr8:99102061 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_27960 0 0 0 0 0 exosome 1 0.500231644844161 1 0.999536710311678 hm5C_site_28348 DeepMRMD:1;iRNA_m5C:0.999536710311678 28349 chr17 39975577 39975577 1 + C T LUAD 39975559 + 39975539 39975579 41 CAGCTAGAGACGCTGGAGCTCCCCCCCGGCTGTGTCCGCAG CAGCTAGAGACGCTGGAGCTCCCCCCCGGCTGTGTCCGTAG < 41bp 1 0.192069725256799 1 0.155062645673752 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39975559 chr17:39975577 synonymous SNV . 0 39 hm5C_associated_SNPs_27961 0 0 1 0 1 Nucleus 1 0.500231643916035 1 0.999536712167931 hm5C_site_28349 DeepMRMD:1;iRNA_m5C:0.999536712167931 28350 chr11 34129826 34129826 1 + A G LUAD 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTGGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.207765311762391 1 0.140373289585114 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129826 synonymous SNV . 0 4 hm5C_associated_SNPs_27962 0 0 1 0 2 chromatin 1 0.500231644113859 1 0.999536711772283 hm5C_site_28350 DeepMRMD:1;iRNA_m5C:0.999536711772283 28351 chr1 22332024 22332024 1 + G T LUAD 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCT < 41bp 1 0.159816901318089 1 0.043851912021637 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22332024 nonsynonymous SNV 0.608 3 41 hm5C_associated_SNPs_27963 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643925578 1 0.999536712148844 hm5C_site_28351 DeepMRMD:1;iRNA_m5C:0.999536712148844 28352 chr1 22332024 22332024 1 + G T LUAD 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCTG < 41bp 1 0.396052771899834 1 0.312018185853958 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22332024 nonsynonymous SNV 0.608 3 40 hm5C_associated_SNPs_27964 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921019 1 0.999536712157962 hm5C_site_28352 DeepMRMD:1;iRNA_m5C:0.999536712157962 28353 chr1 22332024 22332024 1 + G T LUAD 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT CGCCCCCGATTGGGTTGTGACTGCCTGCCACTGCATCTCGT < 41bp 1 0.591055599329826 1 0.463194102048874 experiment 0.817888801340348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22332024 nonsynonymous SNV 0.608 3 26 hm5C_associated_SNPs_27965 0 0 0 0 2 Endoplasmic reticulum 1 0.500231795096547 1 0.999536409806905 hm5C_site_28353 DeepMRMD:1;iRNA_m5C:0.999536409806905 28354 chr1 22332024 22332024 1 + G T LUAD 22332022 + 22332002 22332042 41 CCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAG CCCCGATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAG < 41bp 1 0.153843215167714 1 0.0749252438545227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332022 chr1:22332024 nonsynonymous SNV 0.608 3 23 hm5C_associated_SNPs_27966 0 0 0 0 2 Endoplasmic reticulum 1 0.500231645115811 1 0.999536709768378 hm5C_site_28354 DeepMRMD:1;iRNA_m5C:0.999536709768378 28355 chr1 22332024 22332024 1 + G T LUAD 22332023 + 22332003 22332043 41 CCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGT CCCGATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAGT < 41bp 1 0.414766388571612 1 0.0809365510940552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332023 chr1:22332024 nonsynonymous SNV 0.608 3 22 hm5C_associated_SNPs_27967 0 0 0 0 2 Endoplasmic reticulum 1 0.50023171382412 1 0.999536572351759 hm5C_site_28355 DeepMRMD:1;iRNA_m5C:0.999536572351759 28356 chr1 22332024 22332024 1 + G T LUAD 22332026 + 22332006 22332046 41 GATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCT GATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAGTTCT < 41bp 1 0.191912353719047 1 0.0690514445304871 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332026 chr1:22332024 nonsynonymous SNV 0.608 3 19 hm5C_associated_SNPs_27968 0 0 0 0 2 Endoplasmic reticulum 1 0.50023088179133 1 0.999538236417341 hm5C_site_28356 DeepMRMD:1;iRNA_m5C:0.999538236417341 28357 chr1 22332024 22332024 1 + G T LUAD 22332027 + 22332007 22332047 41 ATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTC ATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAGTTCTC < 41bp 1 0.391929442550621 1 0.307381719350815 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332027 chr1:22332024 nonsynonymous SNV 0.608 3 18 hm5C_associated_SNPs_27969 0 0 0 0 2 Endoplasmic reticulum 1 0.500231690138909 1 0.999536619722182 hm5C_site_28357 DeepMRMD:1;iRNA_m5C:0.999536619722182 28358 chr1 22332024 22332024 1 + G T LUAD 22332032 + 22332012 22332052 41 GTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTCTACCC GTTGTGACTGCCTGCCACTGCATCTCGTGAGTTCTCTACCC < 41bp 1 0.358446189091629 1 0.204976826906204 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332032 chr1:22332024 nonsynonymous SNV 0.608 3 13 hm5C_associated_SNPs_27971 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164428984 1 0.99953671142032 hm5C_site_28358 DeepMRMD:1;iRNA_m5C:0.99953671142032 28359 chr1 3328730 3328730 1 + G T LUAD 3328714 + 3328694 3328734 41 GGCCAGCCCAAGTTTGGGGGCGGCTTGGCGCCCCCGGGGGC GGCCAGCCCAAGTTTGGGGGCGGCTTGGCGCCCCCGTGGGC < 41bp 1 0.379325075458193 1 0.204829812049866 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328714 chr1:3328730 nonsynonymous SNV 0.002 3 37 hm5C_associated_SNPs_27973 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28359 DeepMRMD:1;iRNA_m5C:0.999536712157815 28360 chr1 3328730 3328730 1 + G T LUAD 3328724 + 3328704 3328744 41 AGTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGC AGTTTGGGGGCGGCTTGGCGCCCCCGTGGGCCCCGAACAGC < 41bp 1 0.246803214414869 1 0.272276520729065 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328724 chr1:3328730 nonsynonymous SNV 0.002 3 27 hm5C_associated_SNPs_27974 0 0 0 0 0 Nucleus 1 0.500231643921158 1 0.999536712157685 hm5C_site_28360 DeepMRMD:1;iRNA_m5C:0.999536712157685 28361 chr1 3328730 3328730 1 + G T LUAD 3328725 + 3328705 3328745 41 GTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCG GTTTGGGGGCGGCTTGGCGCCCCCGTGGGCCCCGAACAGCG < 41bp 1 0.431209483418121 1 0.43365067243576 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328725 chr1:3328730 nonsynonymous SNV 0.002 3 26 hm5C_associated_SNPs_27975 0 0 0 0 0 Nucleus 1 0.500231644024175 1 0.99953671195165 hm5C_site_28361 DeepMRMD:1;iRNA_m5C:0.99953671195165 28362 chr1 3328730 3328730 1 + G T LUAD 3328726 + 3328706 3328746 41 TTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGT TTTGGGGGCGGCTTGGCGCCCCCGTGGGCCCCGAACAGCGT < 41bp 1 0.315327087973578 1 0.303069531917572 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328726 chr1:3328730 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_27976 0 0 0 0 0 Nucleus 1 0.500231643921096 1 0.999536712157809 hm5C_site_28362 DeepMRMD:1;iRNA_m5C:0.999536712157809 28363 chr1 3328730 3328730 1 + G T LUAD 3328727 + 3328707 3328747 41 TTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGTG TTGGGGGCGGCTTGGCGCCCCCGTGGGCCCCGAACAGCGTG < 41bp 1 0.219840312332037 1 0.498472332954407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328727 chr1:3328730 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_27977 0 0 0 0 0 Nucleus 1 0.500231643921172 1 0.999536712157656 hm5C_site_28363 DeepMRMD:1;iRNA_m5C:0.999536712157656 28364 chr1 3328730 3328730 1 + G T LUAD 3328728 + 3328708 3328748 41 TGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGTGG TGGGGGCGGCTTGGCGCCCCCGTGGGCCCCGAACAGCGTGG < 41bp 1 0.604876013173709 1 0.651349663734436 experiment 0.790247973652583 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328728 chr1:3328730 nonsynonymous SNV 0.002 3 23 hm5C_associated_SNPs_27978 0 0 0 0 0 Nucleus 1 0.500231643920508 0.697300672531128 0.999536712158984 hm5C_site_28364 DeepMRMD:0.697300672531128;iRNA_m5C:0.999536712158984 28365 chr6 44219848 44219848 1 + C T LUAD 44219833 + 44219813 44219853 41 ACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGA ACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTTAAGGA < 41bp 1 0.465081340937739 1 0.0382607579231262 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219833 chr6:44219848 synonymous SNV . 0 36 hm5C_associated_SNPs_27979 0 0 1 0 0 Nucleus 1 0.500236806564005 1 0.99952638687199 hm5C_site_28365 DeepMRMD:1;iRNA_m5C:0.99952638687199 28366 chr6 44219848 44219848 1 + C T LUAD 44219840 + 44219820 44219860 41 CCATTGACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGAT CCATTGACGAGTACTGTGTGCAGCAGCTTAAGGAATTTGAT < 41bp 1 0.631795764364468 1 0.199734836816788 experiment 0.736408471271063 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219840 chr6:44219848 synonymous SNV . 0 29 hm5C_associated_SNPs_27980 0 0 1 0 0 Nucleus 1 0.500231659989125 1 0.99953668002175 hm5C_site_28366 DeepMRMD:1;iRNA_m5C:0.99953668002175 28367 chr6 44219848 44219848 1 + C T LUAD 44219846 + 44219826 44219866 41 ACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGATGGGAAG ACGAGTACTGTGTGCAGCAGCTTAAGGAATTTGATGGGAAG < 41bp 1 0.468875099075038 1 0.162399798631668 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219846 chr6:44219848 synonymous SNV . 0 23 hm5C_associated_SNPs_27981 0 0 1 0 0 Nucleus 1 0.500231645167868 1 0.999536709664264 hm5C_site_28367 DeepMRMD:1;iRNA_m5C:0.999536709664264 28368 chr17 79080634 79080634 1 + G A LUAD 79080643 + 79080623 79080663 41 CGCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCT CGCCGCCTCCCAGGCCTTCCCCGCCCAGACGGCCAGCGGCT < 41bp 1 0.359387822880769 1 0.307876706123352 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080643 chr17:79080634 nonsynonymous SNV 0.410 0 12 hm5C_associated_SNPs_27982 0 0 1 0 2 Cytosol 1 0.500231643921105 1 0.99953671215779 hm5C_site_28368 DeepMRMD:1;iRNA_m5C:0.99953671215779 28369 chr17 79080634 79080634 1 + G A LUAD 79080644 + 79080624 79080664 41 GCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCTT GCCGCCTCCCAGGCCTTCCCCGCCCAGACGGCCAGCGGCTT < 41bp 1 0.549955810087659 1 0.0773421227931976 experiment 0.900088379824683 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080644 chr17:79080634 nonsynonymous SNV 0.410 0 11 hm5C_associated_SNPs_27983 0 0 1 0 2 Cytosol 1 0.500231643921079 1 0.999536712157841 hm5C_site_28369 DeepMRMD:1;iRNA_m5C:0.999536712157841 28370 chr9 124534959 124534959 1 + G T LUAD 124534965 + 124534945 124534985 41 TCACAAGGTCCTCCGGGGTCCAGCCCTCACCTGCCCGCAGC TCACAAGGTCCTCCTGGGTCCAGCCCTCACCTGCCCGCAGC < 41bp 1 0.249875127520996 1 0.108974456787109 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124534965 chr9:124534959 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_27984 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28370 DeepMRMD:1;iRNA_m5C:0.999536712157815 28371 chr13 111111202 111111202 1 + G T LUAD 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGTCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG < 41bp 1 0.692605761777858 1 0.814523458480835 experiment 0.614788476444283 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111202 nonsynonymous SNV 0.081 5 6 hm5C_associated_SNPs_27985 0 0 0 0 2 Cytosol 1 0.500231635722857 0.37095308303833 0.999536728554286 hm5C_site_28371 DeepMRMD:0.37095308303833;iRNA_m5C:0.999536728554286 28372 chr4 79766106 79766106 1 + G A LUAD 79766114 + 79766094 79766134 41 TTGTTGAATGATGGTGGGAACTATGTACTTTGTGACTTTGG TTGTTGAATGATAGTGGGAACTATGTACTTTGTGACTTTGG < 41bp 1 0.0997983222201379 1 0.123295783996582 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP2K ENSG00000138756 CDS Human protein_coding chr4:79766114 chr4:79766106 nonsynonymous SNV 0.985 0 13 hm5C_associated_SNPs_27986 0 0 1 0 2 Cytosol 1 0.50023164392112 1 0.999536712157759 hm5C_site_28372 DeepMRMD:1;iRNA_m5C:0.999536712157759 28373 chr1 214819597 214819597 1 + A G LUAD 214819612 + 214819592 214819632 41 TCAGAACTAGACAAGTTACTCTCTTCATTTAAAAGTCTGTT TCAGAGCTAGACAAGTTACTCTCTTCATTTAAAAGTCTGTT < 41bp 1 0.0658525669851567 1 0.0951880216598511 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214819612 chr1:214819597 synonymous SNV . 0 6 hm5C_associated_SNPs_27987 0 0 1 0 0 Nucleus 1 0.500231643055326 1 0.999536713889348 hm5C_site_28373 DeepMRMD:1;iRNA_m5C:0.999536713889348 28374 chr6 25450201 25450201 1 + C T LUAD 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGACAGCCAGACTGTGGCTGAGCA < 41bp 1 0.389879207141966 1 0.439896583557129 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450201 synonymous SNV . 0 30 hm5C_associated_SNPs_27988 0 0 0 0 2 unknown 1 0.500231629477699 1 0.999536741044602 hm5C_site_28374 DeepMRMD:1;iRNA_m5C:0.999536741044602 28375 chr17 21731049 21731049 1 + G T LUAD 21731040 + 21731020 21731060 41 GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT GATAAAGAAGGCATCCCCCCCGACCAGCATAGGCTCATCTT < 41bp 1 0.266031715391186 1 0.405216634273529 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731040 chr17:21731049 nonsynonymous SNV 0.900 3 30 hm5C_associated_SNPs_27989 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28375 DeepMRMD:1;iRNA_m5C:0.999536712157815 28376 chr4 79766107 79766107 1 + G T LUAD 79766114 + 79766094 79766134 41 TTGTTGAATGATGGTGGGAACTATGTACTTTGTGACTTTGG TTGTTGAATGATGTTGGGAACTATGTACTTTGTGACTTTGG < 41bp 1 0.11563220066483 1 0.164749205112457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP2K ENSG00000138756 CDS Human protein_coding chr4:79766114 chr4:79766107 nonsynonymous SNV 0.986 0 14 hm5C_associated_SNPs_27990 0 0 1 1 2 Cytosol 1 0.500231643946179 1 0.999536712107642 hm5C_site_28376 DeepMRMD:1;iRNA_m5C:0.999536712107642 28377 chr8 68074148 68074148 1 + C T LUAD 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGACAGCATCATACGTTCCTTTATTTATGTATGTACTTT < 41bp 1 0.206125878822731 1 0.0374999940395355 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074148 nonsynonymous SNV 0.988 1 28 hm5C_associated_SNPs_27991 0 0 0 0 1 Cytosol 1 0.500231644436437 1 0.999536711127125 hm5C_site_28377 DeepMRMD:1;iRNA_m5C:0.999536711127125 28378 chr17 78349667 78349667 1 + A T LUAD 78349659 + 78349639 78349679 41 CCCACAATGCAAGCCTCCACCCCACGCCAGAGGTGAGTAAC CCCACAATGCAAGCCTCCACCCCACGCCTGAGGTGAGTAAC < 41bp 1 0.0240974254442913 1 0.194209218025208 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78349659 chr17:78349667 synonymous SNV . 0 29 hm5C_associated_SNPs_27992 0 0 1 0 1 Nucleus 1 0.50023164392539 1 0.99953671214922 hm5C_site_28378 DeepMRMD:1;iRNA_m5C:0.99953671214922 28379 chr12 132262716 132262716 1 + G C LUAD 132262709 + 132262689 132262729 41 CTTCGAGCAAAAGCAAAGATCCACCGAGAGAAGAAGAGAAA CTTCGAGCAAAAGCAAAGATCCACCGACAGAAGAAGAGAAA < 41bp 1 0.0829486809129284 1 0.111761778593063 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132262709 chr12:132262716 nonsynonymous SNV 0.901 4 28 hm5C_associated_SNPs_27993 0 0 1 0 0 Nucleus 1 0.500231650290106 1 0.999536699419788 hm5C_site_28379 DeepMRMD:1;iRNA_m5C:0.999536699419788 28380 chr1 93998552 93998552 1 + G A LUAD 93998568 + 93998548 93998588 41 GAACGCAAAGTTATTCCCATCATTTCAAAATGTTTGGAAGG GAACACAAAGTTATTCCCATCATTTCAAAATGTTTGGAAGG < 41bp 1 0.0472950721479178 1 0.128091394901276 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:93998568 chr1:93998552 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_27994 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28380 DeepMRMD:1;iRNA_m5C:0.999536712157815 28381 chr19 36034719 36034719 1 + C A LUAD 36034699 - 36034679 36034719 41 GTGTAGGCAAGGATGCCAGCCATGGGCCCCTTGGCTGCTGC TTGTAGGCAAGGATGCCAGCCATGGGCCCCTTGGCTGCTGC < 41bp 1 0.429268370590921 1 0.592822909355164 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36034699 chr19:36034719 nonsynonymous SNV 0.918 4 1 hm5C_associated_SNPs_27995 0 0 1 0 0 chromatin 1 0.500231643784061 0.814354181289672 0.999536712431879 hm5C_site_28381 DeepMRMD:0.814354181289672;iRNA_m5C:0.999536712431879 28382 chr16 68109324 68109324 1 + G T LUAD 68109341 + 68109321 68109361 41 CAGGCTCTCAGCCAAGACTTCAGAGCAGACAGGGGAGCCAG CAGTCTCTCAGCCAAGACTTCAGAGCAGACAGGGGAGCCAG < 41bp 1 0.645734697719312 1 0.559820234775543 experiment 0.708530604561377 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68109341 chr16:68109324 nonsynonymous SNV 0.004 0 4 hm5C_associated_SNPs_27996 0 0 1 0 2 Ribosome 1 0.500231643921682 0.880359530448914 0.999536712156635 hm5C_site_28382 DeepMRMD:0.880359530448914;iRNA_m5C:0.999536712156635 28383 chr16 30740307 30740307 1 + G T LUAD 30740289 + 30740269 30740309 41 TTTTTCTCTCACCCCCAGGACTCCCTGGAGGAAAAGCGGAA TTTTTCTCTCACCCCCAGGACTCCCTGGAGGAAAAGCGTAA < 41bp 1 0.0639513153209551 1 0.123671770095825 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30740289 chr16:30740307 synonymous SNV . 0 39 hm5C_associated_SNPs_27997 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28383 DeepMRMD:1;iRNA_m5C:0.999536712157815 28384 chr20 46264276 46264276 1 + A G LUAD 46264260 + 46264240 46264280 41 TGGAGCTAGGTATGGGGGTTCCAGTAACATAGCTTCATTGA TGGAGCTAGGTATGGGGGTTCCAGTAACATAGCTTCGTTGA < 41bp 1 0.30887032513024 1 0.258012235164642 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46264260 chr20:46264276 synonymous SNV . 0 37 hm5C_associated_SNPs_27998 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_28384 DeepMRMD:1;iRNA_m5C:0.999536712157816 28385 chr8 121259925 121259925 1 + C T LUAD 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCTCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.0758572258608205 1 0.122750818729401 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259925 synonymous SNV . 0 16 hm5C_associated_SNPs_27999 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28385 DeepMRMD:1;iRNA_m5C:0.999536712157815 28386 chr8 121259925 121259925 1 + C T LUAD 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCTCCATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.34233100998217 1 0.135243088006973 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259925 synonymous SNV . 0 12 hm5C_associated_SNPs_28000 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28386 DeepMRMD:1;iRNA_m5C:0.999536712157815 28387 chr6 106555120 106555120 1 + A T LUAD 106555109 + 106555089 106555129 41 AGTGACAATGCTGACCGGCTCGAGGACGTGGAGGATGACAT AGTGACAATGCTGACCGGCTCGAGGACGTGGTGGATGACAT < 41bp 1 0.603370733698813 1 0.794021666049957 experiment 0.793258532602374 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106555109 chr6:106555120 nonsynonymous SNV 0.771 3 32 hm5C_associated_SNPs_28001 0 0 0 0 0 cytosol 1 0.500231693647316 0.411956667900086 0.999536612705368 hm5C_site_28387 DeepMRMD:0.411956667900086;iRNA_m5C:0.999536612705368 28388 chr16 77232114 77232114 1 + G C LUAD 77232113 + 77232093 77232133 41 GGGTGAAGAAAGAGGAGGACCGGCTCTTCATTCGTTACCCA GGGTGAAGAAAGAGGAGGACCCGCTCTTCATTCGTTACCCA < 41bp 1 0.251763161747812 1 0.072078138589859 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MON1B ENSG00000103111 CDS Human protein_coding chr16:77232113 chr16:77232114 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_28002 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_28388 DeepMRMD:1;iRNA_m5C:0.999536712157814 28389 chr2 32724733 32724733 1 + T C LUAD 32724730 + 32724710 32724750 41 TATTTCTGCCGTGATAGAATCGGTTACATTTTTAGTGCACC TATTTCTGCCGTGATAGAATCGGCTACATTTTTAGTGCACC < 41bp 1 0.0917881011517159 1 0.696305990219116 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32724730 chr2:32724733 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_28005 0 0 1 0 0 Nucleus 1 0.500231643920928 0.607388019561768 0.999536712158145 hm5C_site_28389 DeepMRMD:0.607388019561768;iRNA_m5C:0.999536712158145 28390 chr10 70726924 70726924 1 + A T LUAD 70726923 + 70726903 70726943 41 TGGATATGGGATTTGCTGATCAAGTGGAAGAGATTTTAAGT TGGATATGGGATTTGCTGATCTAGTGGAAGAGATTTTAAGT < 41bp 1 0.470719223825682 1 0.330955415964127 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70726923 chr10:70726924 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_28006 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28390 DeepMRMD:1;iRNA_m5C:0.999536712157815 28391 chr1 36358858 36358858 1 + T C LUAD 36358839 + 36358819 36358859 41 CTGTTCCCTTGGAGTCTGTGCAAGCCCTGGATGTGGCCATG CTGTTCCCTTGGAGTCTGTGCAAGCCCTGGATGTGGCCACG < 41bp 1 0.298560951445638 1 0.660102427005768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGO1 ENSG00000092847 CDS Human protein_coding chr1:36358839 chr1:36358858 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_28007 0 0 1 0 1 Cytosol 1 0.500231637583295 0.679795145988464 0.999536724833409 hm5C_site_28391 DeepMRMD:0.679795145988464;iRNA_m5C:0.999536724833409 28392 chrX 106046140 106046140 1 + G A LUAD 106046129 + 106046109 106046149 41 TTCTGAAAAATGCGCTGAAGCTGTGGCTGATGGAAAGGTCC TTCTGAAAAATGCGCTGAAGCTGTGGCTGATAGAAAGGTCC < 41bp 1 0.551697810724607 1 0.319975048303604 experiment 0.896604378550787 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106046129 chrX:106046140 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_28008 0 0 0 0 1 exosome 1 0.500231644182653 1 0.999536711634694 hm5C_site_28392 DeepMRMD:1;iRNA_m5C:0.999536711634694 28393 chr20 19955660 19955660 1 + C T LUAD 19955679 + 19955659 19955699 41 CCAGACGAGCATGCCAGAAACAGTCAACCATAACAAACATG CTAGACGAGCATGCCAGAAACAGTCAACCATAACAAACATG < 41bp 1 0.172310659168559 1 0.427638620138168 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19955679 chr20:19955660 stopgain 0.996 0 2 hm5C_associated_SNPs_28009 0 0 0 0 0 Nucleus 1 0.500231644070273 1 0.999536711859454 hm5C_site_28393 DeepMRMD:1;iRNA_m5C:0.999536711859454 28394 chr17 78359421 78359421 1 + G T LUAD 78359407 + 78359387 78359427 41 ATGGAACAAACTGAGGAGATCGCTTGAGACGAACGGTTAGT ATGGAACAAACTGAGGAGATCGCTTGAGACGAACTGTTAGT < 41bp 1 0.043431755148163 1 0.388231158256531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78359407 chr17:78359421 nonsynonymous SNV 0.010 4 35 hm5C_associated_SNPs_28010 0 0 1 0 2 Nucleus 1 0.500231643917475 1 0.99953671216505 hm5C_site_28394 DeepMRMD:1;iRNA_m5C:0.99953671216505 28395 chr3 42242491 42242491 1 + G A LUAD 42242472 + 42242452 42242492 41 CCCCGGTCCAGCTTCTACGGCAGCGACATAGGCAACGTCGT CCCCGGTCCAGCTTCTACGGCAGCGACATAGGCAACGTCAT < 41bp 1 0.357747682166051 1 0.0827156603336334 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42242472 chr3:42242491 nonsynonymous SNV 0.226 0 40 hm5C_associated_SNPs_28011 0 0 0 0 1 Cytosol 1 0.500231643921104 1 0.999536712157793 hm5C_site_28395 DeepMRMD:1;iRNA_m5C:0.999536712157793 28396 chr7 142460763 142460763 1 + A C LUAD 142460745 + 142460725 142460765 41 TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGT TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGCGT < 41bp 1 0.515002258836952 1 0.085356742143631 experiment 0.969995482326095 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460745 chr7:142460763 synonymous SNV . 0 39 hm5C_associated_SNPs_28012 0 0 0 0 0 Cytosol 1 0.500231643921305 1 0.99953671215739 hm5C_site_28396 DeepMRMD:1;iRNA_m5C:0.99953671215739 28397 chr7 142460763 142460763 1 + A C LUAD 142460757 + 142460737 142460777 41 GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG GTGGTCTGCAATGGACAGCTCCAAGGCGTTGTCTCCTGGGG < 41bp 1 0.269797506510239 1 0.580161929130554 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460757 chr7:142460763 synonymous SNV . 0 27 hm5C_associated_SNPs_28013 0 0 0 0 0 Cytosol 1 0.500231754263533 0.839676141738892 0.999536491472933 hm5C_site_28397 DeepMRMD:0.839676141738892;iRNA_m5C:0.999536491472933 28398 chr7 142460763 142460763 1 + A C LUAD 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTCTGCAATGGACAGCTCCAAGGCGTTGTCTCCTGGGGT < 41bp 1 0.440935381100493 1 0.405548423528671 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460763 synonymous SNV . 0 26 hm5C_associated_SNPs_28014 0 0 0 0 0 Cytosol 1 0.500231644804531 1 0.999536710390938 hm5C_site_28398 DeepMRMD:1;iRNA_m5C:0.999536710390938 28399 chr7 142460763 142460763 1 + A C LUAD 142460769 + 142460749 142460789 41 GGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC GGACAGCTCCAAGGCGTTGTCTCCTGGGGTGATGGCTGTGC < 41bp 1 0.640055589723103 1 0.77164214849472 experiment 0.719888820553793 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460769 chr7:142460763 synonymous SNV . 0 15 hm5C_associated_SNPs_28015 0 0 0 0 0 Cytosol 1 0.500231643921092 0.45671570301056 0.999536712157815 hm5C_site_28399 DeepMRMD:0.45671570301056;iRNA_m5C:0.999536712157815 28400 chr7 142460763 142460763 1 + A C LUAD 142460771 + 142460751 142460791 41 ACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC ACAGCTCCAAGGCGTTGTCTCCTGGGGTGATGGCTGTGCCC < 41bp 1 0.40085578532134 1 0.8082674741745 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460771 chr7:142460763 synonymous SNV . 0 13 hm5C_associated_SNPs_28016 0 0 0 0 0 Cytosol 1 0.500231643921088 0.383465051651 0.999536712157823 hm5C_site_28400 DeepMRMD:0.383465051651;iRNA_m5C:0.999536712157823 28401 chr13 76393660 76393660 1 + G T LUAD 76393641 + 76393621 76393661 41 TGAGAAGTCTAAGAGAAGCTCTAAGACGTTTAAGGAAATGC TGAGAAGTCTAAGAGAAGCTCTAAGACGTTTAAGGAAATTC < 41bp 1 0.302049235699495 1 0.236374050378799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76393641 chr13:76393660 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_28017 0 0 1 0 1 Cytosol 1 0.500232239969788 1 0.999535520060423 hm5C_site_28401 DeepMRMD:1;iRNA_m5C:0.999535520060423 28402 chr19 8321918 8321918 1 + C G LUAD 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTGTCTG < 41bp 1 0.478461463402045 1 0.396961510181427 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321918 nonsynonymous SNV 0.994 5 37 hm5C_associated_SNPs_28018 0 0 0 0 2 chromatin 1 0.500231543913619 1 0.999536912172762 hm5C_site_28402 DeepMRMD:1;iRNA_m5C:0.999536912172762 28403 chr16 90028216 90028216 1 + G T LUAD 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACTACCTGGCTGTGATCCCTGCACGCGTTGTACACAA < 41bp 1 0.379676025534423 1 0.245810121297836 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028216 nonsynonymous SNV 0.959 4 7 hm5C_associated_SNPs_28019 0 0 1 0 2 Ribosome 1 0.500230727287277 1 0.999538545425447 hm5C_site_28403 DeepMRMD:1;iRNA_m5C:0.999538545425447 28404 chr16 90028216 90028216 1 + G T LUAD 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACTACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC < 41bp 1 0.106294830335336 1 0.252038300037384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028216 nonsynonymous SNV 0.959 4 6 hm5C_associated_SNPs_28020 0 0 1 0 2 Ribosome 1 0.500231642789675 1 0.99953671442065 hm5C_site_28404 DeepMRMD:1;iRNA_m5C:0.99953671442065 28405 chr5 140481763 140481763 1 + C A LUAD 140481767 + 140481747 140481787 41 CCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCG CCATCAACGCGGACAAAGGCCACCTGTTTGCCCTCAGGTCG < 41bp 1 0.679036032724742 1 0.180172622203827 experiment 0.641927934550516 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140481767 chr5:140481763 nonsynonymous SNV 0.073 3 17 hm5C_associated_SNPs_28021 0 0 0 0 0 exosome 1 0.500231643921793 1 0.999536712156414 hm5C_site_28405 DeepMRMD:1;iRNA_m5C:0.999536712156414 28406 chr5 145849210 145849210 1 + A G LUAD 145849206 + 145849186 145849226 41 AGCTGGAGCAACAGCAGTTTCTGAATGGACTGAATATAAAA AGCTGGAGCAACAGCAGTTTCTGAGTGGACTGAATATAAAA < 41bp 1 0.670761083244902 1 0.491458207368851 experiment 0.658477833510196 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145849206 chr5:145849210 synonymous SNV . 0 25 hm5C_associated_SNPs_28022 0 0 1 0 1 Nucleus 1 0.50023166727563 1 0.999536665448741 hm5C_site_28406 DeepMRMD:1;iRNA_m5C:0.999536665448741 28407 chr1 33957289 33957289 1 + C T LUAD 33957276 + 33957256 33957296 41 GGGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTC GGGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTTCAGAGTC < 41bp 1 0.431463905765977 1 0.308873653411865 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957276 chr1:33957289 synonymous SNV . 0 34 hm5C_associated_SNPs_28023 0 0 0 0 1 exosome 1 0.500231643921246 1 0.999536712157508 hm5C_site_28407 DeepMRMD:1;iRNA_m5C:0.999536712157508 28408 chr1 33957289 33957289 1 + C T LUAD 33957277 + 33957257 33957297 41 GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCG GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTTCAGAGTCG < 41bp 1 0.222559392508184 1 0.102174758911133 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957277 chr1:33957289 synonymous SNV . 0 33 hm5C_associated_SNPs_28024 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28408 DeepMRMD:1;iRNA_m5C:0.999536712157815 28409 chr1 33957289 33957289 1 + C T LUAD 33957278 + 33957258 33957298 41 GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGT GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTTCAGAGTCGT < 41bp 1 0.119416208480152 1 0.102094978094101 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957278 chr1:33957289 synonymous SNV . 0 32 hm5C_associated_SNPs_28025 0 0 0 0 1 exosome 1 0.500231643918713 1 0.999536712162573 hm5C_site_28409 DeepMRMD:1;iRNA_m5C:0.999536712162573 28410 chr1 33957289 33957289 1 + C T LUAD 33957279 + 33957259 33957299 41 GCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTA GCCCAGGATTGCAGGGGCCCCAGCTCTGTTTCAGAGTCGTA < 41bp 1 0.361638709488984 1 0.17216283082962 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957279 chr1:33957289 synonymous SNV . 0 31 hm5C_associated_SNPs_28026 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28410 DeepMRMD:1;iRNA_m5C:0.999536712157815 28411 chr14 102455115 102455115 1 + G C LUAD 102455097 + 102455077 102455117 41 TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAAGAT TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAACAT < 41bp 1 0.0799498467597432 1 0.0739034712314606 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102455097 chr14:102455115 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_28027 0 0 1 0 2 Cytosol 1 0.500227694242437 1 0.999544611515126 hm5C_site_28411 DeepMRMD:1;iRNA_m5C:0.999544611515126 28412 chr20 32659995 32659995 1 + G A LUAD 32660003 + 32659983 32660023 41 AAATCAGATGTGGAGACCATCTTCTCTAAGTATGGCCGTGT AAATCAGATGTGAAGACCATCTTCTCTAAGTATGGCCGTGT < 41bp 1 0.128039772364721 1 0.0645228624343872 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32660003 chr20:32659995 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_28028 0 0 1 0 0 Cytosol 1 0.500231643923984 1 0.999536712152032 hm5C_site_28412 DeepMRMD:1;iRNA_m5C:0.999536712152032 28413 chr20 32659989 32659989 1 + G C LUAD 32660003 + 32659983 32660023 41 AAATCAGATGTGGAGACCATCTTCTCTAAGTATGGCCGTGT AAATCACATGTGGAGACCATCTTCTCTAAGTATGGCCGTGT < 41bp 1 0.15518016625253 1 0.075805276632309 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32660003 chr20:32659989 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_28029 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_28413 DeepMRMD:1;iRNA_m5C:0.999536712157814 28414 chrX 152959710 152959710 1 + C G LUAD 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCGATCTCTCGATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.371403044367822 1 0.121910601854324 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959710 synonymous SNV . 0 13 hm5C_associated_SNPs_28030 0 0 1 4 1 Ribosome 1 0.500231655232968 1 0.999536689534064 hm5C_site_28414 DeepMRMD:1;iRNA_m5C:0.999536689534064 28415 chr7 129093097 129093097 1 + G T LUAD 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTCAGAGGTCTATGTGCTACACTGGTCCAGGTACAACTGC < 41bp 1 0.543120591228141 1 0.100315481424332 experiment 0.913758817543719 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093097 nonsynonymous SNV 0.996 4 12 hm5C_associated_SNPs_28031 0 0 1 0 2 Nucleus 1 0.500231624816144 1 0.999536750367712 hm5C_site_28415 DeepMRMD:1;iRNA_m5C:0.999536750367712 28416 chr6 7572226 7572226 1 + G T LUAD 7572244 + 7572224 7572264 41 AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGATC AGTATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGATC < 41bp 1 0.043953698249716 1 0.110135197639465 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572244 chr6:7572226 nonsynonymous SNV 0.334 4 3 hm5C_associated_SNPs_28032 0 0 1 0 1 Nucleus 1 0.500231643917604 1 0.999536712164791 hm5C_site_28416 DeepMRMD:1;iRNA_m5C:0.999536712164791 28417 chr6 133844274 133844274 1 + G C LUAD 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGCTGCTTTCCCCATTGAGAATATTTACAGTG < 41bp 1 0.0813952956978992 1 0.387649446725845 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844274 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_28033 0 0 0 0 2 Cytosol 1 0.500231643926619 1 0.999536712146763 hm5C_site_28417 DeepMRMD:1;iRNA_m5C:0.999536712146763 28418 chr6 133844274 133844274 1 + G C LUAD 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGCTGCTTTCCCCATTGAGAATATTTACAGTGC < 41bp 1 0.0819639550787385 1 0.137233525514603 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844274 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_28034 0 0 0 0 2 Cytosol 1 0.500231642448532 1 0.999536715102935 hm5C_site_28418 DeepMRMD:1;iRNA_m5C:0.999536715102935 28419 chr6 139498103 139498103 1 + G T LUAD 139498084 + 139498064 139498104 41 TCTGTTTCCCCCAGGCCCGCCTGAACTGTAAGCACTGTGGG TCTGTTTCCCCCAGGCCCGCCTGAACTGTAAGCACTGTGTG < 41bp 1 0.55467169452325 1 0.162654310464859 experiment 0.890656610953501 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECA ENSG00000112406 CDS Human protein_coding chr6:139498084 chr6:139498103 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_28035 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28419 DeepMRMD:1;iRNA_m5C:0.999536712157815 28420 chr22 39125575 39125575 1 + G T LUAD 39125568 + 39125548 39125588 41 ACGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT ACGAAACGAGACGAGGGGGGCCCGTCTTGTGGGCCAGCAGT < 41bp 1 0.124928522157304 1 0.214777648448944 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125568 chr22:39125575 nonsynonymous SNV 0.008 1 28 hm5C_associated_SNPs_28036 0 0 1 0 1 Ribosome 1 0.500231643050159 1 0.999536713899682 hm5C_site_28420 DeepMRMD:1;iRNA_m5C:0.999536713899682 28421 chr22 39125575 39125575 1 + G T LUAD 39125569 + 39125549 39125589 41 CGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA CGAAACGAGACGAGGGGGGCCCGTCTTGTGGGCCAGCAGTA < 41bp 1 0.0454170747276272 1 0.186276614665985 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125569 chr22:39125575 nonsynonymous SNV 0.008 1 27 hm5C_associated_SNPs_28037 0 0 1 0 1 Ribosome 1 0.500231643920915 1 0.99953671215817 hm5C_site_28421 DeepMRMD:1;iRNA_m5C:0.99953671215817 28422 chr22 39125575 39125575 1 + G T LUAD 39125570 + 39125550 39125590 41 GAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAG GAAACGAGACGAGGGGGGCCCGTCTTGTGGGCCAGCAGTAG < 41bp 1 0.143733783414318 1 0.347305238246918 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125570 chr22:39125575 nonsynonymous SNV 0.008 1 26 hm5C_associated_SNPs_28038 0 0 1 0 1 Ribosome 1 0.500231643920156 1 0.999536712159688 hm5C_site_28422 DeepMRMD:1;iRNA_m5C:0.999536712159688 28423 chr11 33358645 33358645 1 + G T LUAD 33358660 + 33358640 33358680 41 CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT CTCAATGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT < 41bp 1 0.188070749936169 1 0.169177681207657 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358660 chr11:33358645 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_28039 0 0 1 1 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28423 DeepMRMD:1;iRNA_m5C:0.999536712157815 28424 chr12 93968550 93968550 1 + G T LUAD 93968564 + 93968544 93968584 41 AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT AAAAGATGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT < 41bp 1 0.0536564546183719 1 0.0826861560344696 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93968564 chr12:93968550 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_28040 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28424 DeepMRMD:1;iRNA_m5C:0.999536712157815 28425 chr10 17276749 17276749 1 + C T LUAD 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT GGAACAATGACGCCCTGCGCCAGGCAAAGTAGGAGTCCACT < 41bp 1 0.406718208694829 1 0.680987179279327 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276749 stopgain 1.000 1 30 hm5C_associated_SNPs_28041 0 0 1 0 2 Ribosome 1 0.500231642153567 0.638025641441346 0.999536715692866 hm5C_site_28425 DeepMRMD:0.638025641441346;iRNA_m5C:0.999536715692866 28426 chr10 17276749 17276749 1 + C T LUAD 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT CGCCAGGCAAAGTAGGAGTCCACTGAGTACCGGAGACAGGT < 41bp 1 0.281348155503258 1 0.108192771673203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276749 stopgain 1.000 1 13 hm5C_associated_SNPs_28042 0 0 1 0 2 Ribosome 1 0.500231643345005 1 0.99953671330999 hm5C_site_28426 DeepMRMD:1;iRNA_m5C:0.99953671330999 28427 chr16 74339560 74339560 1 + G A LUAD 74339544 + 74339524 74339564 41 GGGCAGGAGAAAGAAGAGAGCAAAAAGGATAGGAAAGAGGA GGGCAGGAGAAAGAAGAGAGCAAAAAGGATAGGAAAAAGGA < 41bp 1 0.568691854576933 1 0.512498080730438 experiment 0.862616290846133 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74339544 chr16:74339560 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_28043 0 0 1 0 0 Ribosome 1 0.500229330398677 0.975003838539124 0.999541339202646 hm5C_site_28427 DeepMRMD:0.975003838539124;iRNA_m5C:0.999541339202646 28428 chr16 74339560 74339560 1 + G A LUAD 74339565 + 74339545 74339585 41 AAAAAGGATAGGAAAGAGGACAAGGAGAAAGATAAAGATAA AAAAAGGATAGGAAAAAGGACAAGGAGAAAGATAAAGATAA < 41bp 1 0.536744668747612 1 0.397433698177338 experiment 0.926510662504775 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74339565 chr16:74339560 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_28044 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28428 DeepMRMD:1;iRNA_m5C:0.999536712157815 28429 chr11 4156359 4156359 1 + G T LUAD 4156342 + 4156322 4156362 41 AAATTCCTGATGACCTGAAGCAACTTTATAAAACTGTGTGG AAATTCCTGATGACCTGAAGCAACTTTATAAAACTGTTTGG < 41bp 1 0.299138097495248 1 0.122512102127075 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4156342 chr11:4156359 synonymous SNV . 0 38 hm5C_associated_SNPs_28045 0 0 1 0 1 Nucleus 1 0.500231643944299 1 0.999536712111401 hm5C_site_28429 DeepMRMD:1;iRNA_m5C:0.999536712111401 28430 chr14 102918939 102918939 1 + G T LUAD 102918952 + 102918932 102918972 41 TGCACTGGACCAGGCTGGACCTCTCCCAGCTAGGTACGGCC TGCACTGTACCAGGCTGGACCTCTCCCAGCTAGGTACGGCC < 41bp 1 0.0676863608839626 1 0.290285050868988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102918952 chr14:102918939 nonsynonymous SNV 0.996 4 8 hm5C_associated_SNPs_28046 0 0 1 0 1 Cytosol 1 0.500231643897194 1 0.999536712205611 hm5C_site_28430 DeepMRMD:1;iRNA_m5C:0.999536712205611 28431 chr1 55075530 55075530 1 + C T LUAD 55075531 + 55075511 55075551 41 CTCCAGCGTCAGGATGTTGCCACTTGGAGTATGAACAATGG CTCCAGCGTCAGGATGTTGTCACTTGGAGTATGAACAATGG < 41bp 1 0.515763554895352 1 0.1272052526474 experiment 0.968472890209297 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control FAM151A ENSG00000162391 CDS Human protein_coding chr1:55075531 chr1:55075530 nonsynonymous SNV 0.005 0 20 hm5C_associated_SNPs_28047 0 0 0 1 0 exosome 1 0.500231643921498 1 0.999536712157004 hm5C_site_28431 DeepMRMD:1;iRNA_m5C:0.999536712157004 28432 chr19 48179129 48179129 1 + G A LUAD 48179146 + 48179126 48179166 41 CTGGATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAGG CTGAATAATCCCGGGGAGGCCCAAAGTGCCTTCTATGAAGG < 41bp 1 0.143668345823289 1 0.657753050327301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BICRA ENSG00000063169 CDS Human protein_coding chr19:48179146 chr19:48179129 nonsynonymous SNV 0.995 2 4 hm5C_associated_SNPs_28048 0 0 1 0 2 unknown 1 0.500231643910866 0.684493899345398 0.999536712178267 hm5C_site_28432 DeepMRMD:0.684493899345398;iRNA_m5C:0.999536712178267 28433 chr19 41758860 41758860 1 + G A LUAD 41758850 + 41758830 41758870 41 ACACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAG ACACAGCTTCCTCCTCTATTCCCGGCTCGGAGACCAGCCAG < 41bp 1 0.64263954654224 1 0.401906371116638 experiment 0.71472090691552 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758850 chr19:41758860 synonymous SNV . 0 31 hm5C_associated_SNPs_28051 0 0 0 0 1 Nucleus 1 0.500231643920898 1 0.999536712158205 hm5C_site_28433 DeepMRMD:1;iRNA_m5C:0.999536712158205 28434 chr19 41758860 41758860 1 + G A LUAD 41758851 + 41758831 41758871 41 CACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT CACAGCTTCCTCCTCTATTCCCGGCTCGGAGACCAGCCAGT < 41bp 1 0.19001753902099 1 0.163288235664368 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758851 chr19:41758860 synonymous SNV . 0 30 hm5C_associated_SNPs_28052 0 0 0 0 1 Nucleus 1 0.500248337321815 1 0.99950332535637 hm5C_site_28434 DeepMRMD:1;iRNA_m5C:0.99950332535637 28435 chr4 57181843 57181843 1 + G T LUAD 57181825 + 57181805 57181845 41 CCGCCAGTCAATGCAAAGTTCTCTATTATGCCTGCCTGGCA CCGCCAGTCAATGCAAAGTTCTCTATTATGCCTGCCTGTCA < 41bp 1 0.548154577832388 1 0.870475172996521 experiment 0.903690844335225 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57181825 chr4:57181843 nonsynonymous SNV 0.992 3 39 hm5C_associated_SNPs_28053 0 0 0 0 0 cytosol 1 0.500232295019636 0.259049654006958 0.999535409960728 hm5C_site_28435 DeepMRMD:0.259049654006958;iRNA_m5C:0.999535409960728 28436 chr17 64785039 64785039 1 + G T LUAD 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCCGGATGATCGACTGGGAAAAACTGGAGAA < 41bp 1 0.364704263854856 1 0.383940428495407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785039 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_28054 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28436 DeepMRMD:1;iRNA_m5C:0.999536712157815 28437 chr17 64785039 64785039 1 + G T LUAD 64785046 + 64785026 64785066 41 GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAG GCCTTCTTCCGGATGATCGACTGGGAAAAACTGGAGAACAG < 41bp 1 0.562413912411769 1 0.677237391471863 experiment 0.875172175176462 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785046 chr17:64785039 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_28055 0 0 1 0 2 Ribosome 1 0.500231643920775 0.645525217056274 0.999536712158451 hm5C_site_28437 DeepMRMD:0.645525217056274;iRNA_m5C:0.999536712158451 28438 chr1 118477140 118477140 1 + C T LUAD 118477159 + 118477139 118477179 41 GCCCCTCCCCAGATGGGCTACACTTAGCTGTTGGGTATGAG GTCCCTCCCCAGATGGGCTACACTTAGCTGTTGGGTATGAG < 41bp 1 0.149923715287321 1 0.0421774089336395 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR3 ENSG00000065183 CDS Human protein_coding chr1:118477159 chr1:118477140 synonymous SNV . 0 2 hm5C_associated_SNPs_28056 0 0 1 0 1 Nucleus 1 0.500231643921023 1 0.999536712157955 hm5C_site_28438 DeepMRMD:1;iRNA_m5C:0.999536712157955 28439 chr16 4431769 4431769 1 + C T LUAD 4431752 + 4431732 4431772 41 GCCTCTTCCCCCGCCTGCGGCTGCTGGCAGCTGCCCGCAAC GCCTCTTCCCCCGCCTGCGGCTGCTGGCAGCTGCCCGTAAC < 41bp 1 0.514576485162801 1 0.225149065256119 experiment 0.970847029674398 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VASN ENSG00000168140 CDS Human protein_coding chr16:4431752 chr16:4431769 synonymous SNV . 0 38 hm5C_associated_SNPs_28057 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28439 DeepMRMD:1;iRNA_m5C:0.999536712157815 28440 chr4 166254679 166254679 1 + G C LUAD 166254694 + 166254674 166254714 41 CATGGGGATCCCTTATAGTTCATGAAGCCCTTTATTTCTTA CATGGCGATCCCTTATAGTTCATGAAGCCCTTTATTTCTTA < 41bp 1 0.585163492368244 1 0.0655241906642914 experiment 0.829673015263513 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166254694 chr4:166254679 nonsynonymous SNV 0.997 3 6 hm5C_associated_SNPs_28058 0 0 1 0 1 Ribosome 1 0.500231643915528 1 0.999536712168944 hm5C_site_28440 DeepMRMD:1;iRNA_m5C:0.999536712168944 28441 chr2 211465353 211465353 1 + A T LUAD 211465360 + 211465340 211465380 41 AGTTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT AGTTGAGTCCATTTTGGCTACGGAAGACAGGCAGCTGTTTT < 41bp 1 0.544140546191612 1 0.73807966709137 experiment 0.911718907616776 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPS1 ENSG00000021826 CDS Human protein_coding chr2:211465360 chr2:211465353 nonsynonymous SNV 0.998 3 14 hm5C_associated_SNPs_28059 0 0 1 0 2 Nucleus 1 0.500231643921094 0.52384066581726 0.999536712157812 hm5C_site_28441 DeepMRMD:0.52384066581726;iRNA_m5C:0.999536712157812 28442 chr9 18706887 18706887 1 + G T LUAD 18706892 + 18706872 18706912 41 GAAGGGCCCAAGCCAGCATCCCAGCGTGCCTGTTATGCAGG GAAGGGCCCAAGCCATCATCCCAGCGTGCCTGTTATGCAGG < 41bp 1 0.102267402981504 1 0.557008683681488 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18706892 chr9:18706887 nonsynonymous SNV 0.928 0 16 hm5C_associated_SNPs_28060 0 0 0 0 0 Nucleus 1 0.500231642964117 0.885982632637024 0.999536714071765 hm5C_site_28442 DeepMRMD:0.885982632637024;iRNA_m5C:0.999536714071765 28443 chr5 176710798 176710798 1 + T C LUAD 176710791 + 176710771 176710811 41 TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTCCC TTCTTTTGGAATTCTAGGACCGAATCACTGATGCTGGTCCC < 41bp 1 0.0834039563393069 1 0.17665821313858 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176710791 chr5:176710798 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_28061 0 0 1 0 1 Nucleus 1 0.500231646456814 1 0.999536707086371 hm5C_site_28443 DeepMRMD:1;iRNA_m5C:0.999536707086371 28444 chr1 233514942 233514942 1 + G T LUAD 233514944 + 233514924 233514964 41 TGGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG TGGGTGCACCGTCCTTCTTGCATCGGTGGCTCTGGGACTGG < 41bp 1 0.322297398302069 1 0.0345241129398346 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233514944 chr1:233514942 synonymous SNV . 0 19 hm5C_associated_SNPs_28062 0 0 1 0 0 unknown 1 0.500231643934458 1 0.999536712131084 hm5C_site_28444 DeepMRMD:1;iRNA_m5C:0.999536712131084 28445 chr9 139228913 139228913 1 + G A LUAD 139228915 + 139228895 139228935 41 TCTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGG TCTGCACAGGATGGAGGCATCCTGCCTAGAGCTGGCGCTGG < 41bp 1 0.198739155843583 1 0.163270026445389 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228915 chr9:139228913 synonymous SNV . 0 19 hm5C_associated_SNPs_28063 0 0 0 0 1 Cytosol 1 0.500231643921576 1 0.999536712156848 hm5C_site_28445 DeepMRMD:1;iRNA_m5C:0.999536712156848 28446 chr9 139228913 139228913 1 + G A LUAD 139228916 + 139228896 139228936 41 CTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGGA CTGCACAGGATGGAGGCATCCTGCCTAGAGCTGGCGCTGGA < 41bp 1 0.561939127381422 1 0.44281131029129 experiment 0.876121745237156 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228916 chr9:139228913 synonymous SNV . 0 18 hm5C_associated_SNPs_28064 0 0 0 0 1 Cytosol 1 0.500231577407867 1 0.999536845184266 hm5C_site_28446 DeepMRMD:1;iRNA_m5C:0.999536845184266 28447 chr17 59161843 59161843 1 + C T LUAD 59161840 + 59161820 59161860 41 CATTGCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCAT CATTGCAGGATCCAGCCAGTCCGTTCTGACCCCGTCAGCAT < 41bp 1 0.143253932400608 1 0.0279829502105713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59161840 chr17:59161843 synonymous SNV . 0 24 hm5C_associated_SNPs_28065 0 0 1 0 2 Cytosol 1 0.500231643919843 1 0.999536712160314 hm5C_site_28447 DeepMRMD:1;iRNA_m5C:0.999536712160314 28448 chr15 69737240 69737240 1 + G A LUAD 69737220 + 69737200 69737240 41 CAGATGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTG CAGATGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTA < 41bp 1 0.194793578410509 1 0.060178279876709 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737220 chr15:69737240 nonsynonymous SNV 0.995 1 41 hm5C_associated_SNPs_28066 0 0 1 0 0 Nucleus 1 0.500231643919945 1 0.99953671216011 hm5C_site_28448 DeepMRMD:1;iRNA_m5C:0.99953671216011 28449 chr15 69737240 69737240 1 + G A LUAD 69737224 + 69737204 69737244 41 TGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTGAAAC TGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTAAAAC < 41bp 1 0.237444267369587 1 0.24949848651886 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737224 chr15:69737240 nonsynonymous SNV 0.995 1 37 hm5C_associated_SNPs_28067 0 0 1 0 0 Nucleus 1 0.500231643991116 1 0.999536712017769 hm5C_site_28449 DeepMRMD:1;iRNA_m5C:0.999536712017769 28450 chr6 7231533 7231533 1 + C T LUAD 7231530 + 7231510 7231550 41 GAAGAGCTGCCCCCGCTGGCCTCCATTGCCCAGATCATCTC GAAGAGCTGCCCCCGCTGGCCTCTATTGCCCAGATCATCTC < 41bp 1 0.418944196284736 1 0.918304920196533 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RREB1 ENSG00000124782 CDS Human protein_coding chr6:7231530 chr6:7231533 synonymous SNV . 0 24 hm5C_associated_SNPs_28068 0 0 1 0 0 Nucleus 1 0.500231643922402 0.163390159606934 0.999536712155196 hm5C_site_28450 DeepMRMD:0.163390159606934;iRNA_m5C:0.999536712155196 28451 chr3 134851696 134851696 1 + C T LUAD 134851688 + 134851668 134851708 41 CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCC CATCTGCAAAAAGTGCCGGGCAGACCGCTGGAGCTGCTCCC < 41bp 1 0.103403740765417 1 0.47146812081337 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851688 chr3:134851696 nonsynonymous SNV 0.997 4 29 hm5C_associated_SNPs_28069 0 0 0 0 0 exosome 1 0.500231643956909 1 0.999536712086181 hm5C_site_28451 DeepMRMD:1;iRNA_m5C:0.999536712086181 28452 chr19 55898026 55898026 1 + G A LUAD 55898006 + 55897986 55898026 41 ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCGACGG ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCGACGA < 41bp 1 0.658465003705344 1 0.578602850437164 experiment 0.683069992589313 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898006 chr19:55898026 nonsynonymous SNV 0.939 2 41 hm5C_associated_SNPs_28070 0 0 1 0 2 Cytosol 1 0.500231719962706 0.842794299125672 0.999536560074588 hm5C_site_28452 DeepMRMD:0.842794299125672;iRNA_m5C:0.999536560074588 28453 chr19 55898026 55898026 1 + G A LUAD 55898017 + 55897997 55898037 41 GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG GACTGTGGGCGTGGAGCCGGCAGCCGACGACAAAGGTGTCG < 41bp 1 0.510263303365646 1 0.46925213932991 experiment 0.979473393268709 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898017 chr19:55898026 nonsynonymous SNV 0.939 2 30 hm5C_associated_SNPs_28071 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28453 DeepMRMD:1;iRNA_m5C:0.999536712157815 28454 chr2 182786958 182786958 1 + C T LUAD 182786940 + 182786920 182786960 41 GGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCTCTG GGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCTTTG < 41bp 1 0.474335255908392 1 0.124787747859955 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182786940 chr2:182786958 nonsynonymous SNV 0.999 1 39 hm5C_associated_SNPs_28072 0 0 1 0 0 Ribosome 1 0.500231592396476 1 0.999536815207049 hm5C_site_28454 DeepMRMD:1;iRNA_m5C:0.999536815207049 28455 chr22 29695793 29695793 1 + A C LUAD 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGGCCCCCTGGACCTTTGATGGAACCGATGGGAG < 41bp 1 0.468496182556478 1 0.308031558990479 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695793 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_28073 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28455 DeepMRMD:1;iRNA_m5C:0.999536712157815 28456 chr6 35438059 35438059 1 + C G LUAD 35438048 + 35438028 35438068 41 TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAAC TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTGACACACAAC < 41bp 1 0.0281473076234127 1 0.120145678520203 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438048 chr6:35438059 synonymous SNV . 0 32 hm5C_associated_SNPs_28074 0 0 1 0 1 Cytosol 1 0.500231639151534 1 0.999536721696933 hm5C_site_28456 DeepMRMD:1;iRNA_m5C:0.999536721696933 28457 chr11 45926281 45926281 1 + C T LUAD 45926276 + 45926256 45926296 41 TTGTCACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGC TTGTCACCTGTAGATTGCCACCACCTGCCGGCTCACCGTGC < 41bp 1 0.0521234134394098 1 0.043999046087265 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926276 chr11:45926281 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_28075 0 0 0 0 1 Endoplasmic reticulum 1 0.500236998446884 1 0.999526003106233 hm5C_site_28457 DeepMRMD:1;iRNA_m5C:0.999526003106233 28458 chr11 45926281 45926281 1 + C T LUAD 45926280 + 45926260 45926300 41 CACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGCACTT CACCTGTAGATTGCCACCACCTGCCGGCTCACCGTGCACTT < 41bp 1 0.257036028457905 1 0.0550582110881805 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926280 chr11:45926281 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_28076 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_28458 DeepMRMD:1;iRNA_m5C:0.999536712157815 28459 chr11 45926281 45926281 1 + C T LUAD 45926291 + 45926271 45926311 41 TGCCACCACCCGCCGGCTCACCGTGCACTTTAACCCGCCCT TGCCACCACCTGCCGGCTCACCGTGCACTTTAACCCGCCCT < 41bp 1 0.135963056681275 1 0.519873142242432 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926291 chr11:45926281 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_28077 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.960253715515136 0.999536712157815 hm5C_site_28459 DeepMRMD:0.960253715515136;iRNA_m5C:0.999536712157815 28460 chr12 53412608 53412608 1 + G A LUAD 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATAACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA < 41bp 1 0.337633876094525 1 0.0738425254821777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412608 nonsynonymous SNV 0.538 3 5 hm5C_associated_SNPs_28078 0 0 1 0 1 Cytosol 1 0.50023164392109 1 0.999536712157819 hm5C_site_28460 DeepMRMD:1;iRNA_m5C:0.999536712157819 28461 chr12 53412608 53412608 1 + G A LUAD 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATAACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC < 41bp 1 0.0493862744958587 1 0.0510726869106293 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412608 nonsynonymous SNV 0.538 3 3 hm5C_associated_SNPs_28079 0 0 1 0 1 Cytosol 1 0.500231643921077 1 0.999536712157846 hm5C_site_28461 DeepMRMD:1;iRNA_m5C:0.999536712157846 28462 chr5 132203218 132203218 1 + G C LUAD 132203205 + 132203185 132203225 41 GTAGTGTTTTATCTTATCTACACATGGGGGACTGAAGAGTT GTAGTGTTTTATCTTATCTACACATGGGGGACTCAAGAGTT < 41bp 1 0.319975535581428 1 0.172575771808624 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132203205 chr5:132203218 nonsynonymous SNV 0.352 0 34 hm5C_associated_SNPs_28080 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28462 DeepMRMD:1;iRNA_m5C:0.999536712157815 28463 chr5 132203218 132203218 1 + G C LUAD 132203207 + 132203187 132203227 41 AGTGTTTTATCTTATCTACACATGGGGGACTGAAGAGTTCG AGTGTTTTATCTTATCTACACATGGGGGACTCAAGAGTTCG < 41bp 1 0.442620118200393 1 0.354389280080795 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132203207 chr5:132203218 nonsynonymous SNV 0.352 0 32 hm5C_associated_SNPs_28081 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28463 DeepMRMD:1;iRNA_m5C:0.999536712157815 28464 chr5 132203218 132203218 1 + G C LUAD 132203216 + 132203196 132203236 41 TCTTATCTACACATGGGGGACTGAAGAGTTCGAGAGATCCA TCTTATCTACACATGGGGGACTCAAGAGTTCGAGAGATCCA < 41bp 1 0.59745074333858 1 0.702571153640747 experiment 0.805098513322841 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132203216 chr5:132203218 nonsynonymous SNV 0.352 0 23 hm5C_associated_SNPs_28082 0 0 1 0 0 Cytosol 1 0.500231643921896 0.594857692718506 0.999536712156208 hm5C_site_28464 DeepMRMD:0.594857692718506;iRNA_m5C:0.999536712156208 28465 chr8 26223870 26223870 1 + G A LUAD 26223855 + 26223835 26223875 41 ATGAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAAT ATGAATACCTCAGAAGTAAACTCTGTTCACTGTATAAAAAT < 41bp 1 0.314408806880272 1 0.118753254413605 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223855 chr8:26223870 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_28083 0 0 1 0 2 Cytosol 1 0.500231643919193 1 0.999536712161614 hm5C_site_28465 DeepMRMD:1;iRNA_m5C:0.999536712161614 28466 chr8 26223870 26223870 1 + G A LUAD 26223857 + 26223837 26223877 41 GAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGA GAATACCTCAGAAGTAAACTCTGTTCACTGTATAAAAATGA < 41bp 1 0.0823041615584025 1 0.172660022974014 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223857 chr8:26223870 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_28084 0 0 1 0 2 Cytosol 1 0.500231644014539 1 0.999536711970922 hm5C_site_28466 DeepMRMD:1;iRNA_m5C:0.999536711970922 28467 chr8 26223870 26223870 1 + G A LUAD 26223862 + 26223842 26223882 41 CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCA CCTCAGAAGTAAACTCTGTTCACTGTATAAAAATGACTGCA < 41bp 1 0.303793471490189 1 0.314831107854843 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223862 chr8:26223870 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_28085 0 0 1 0 2 Cytosol 1 0.500231643921952 1 0.999536712156095 hm5C_site_28467 DeepMRMD:1;iRNA_m5C:0.999536712156095 28468 chr8 26223870 26223870 1 + G A LUAD 26223864 + 26223844 26223884 41 TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCATA TCAGAAGTAAACTCTGTTCACTGTATAAAAATGACTGCATA < 41bp 1 0.513517263600509 1 0.273767560720444 experiment 0.972965472798983 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223864 chr8:26223870 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_28086 0 0 1 0 2 Cytosol 1 0.500233705582629 1 0.999532588834741 hm5C_site_28468 DeepMRMD:1;iRNA_m5C:0.999532588834741 28469 chr8 26223870 26223870 1 + G A LUAD 26223878 + 26223858 26223898 41 TGTTCACTGTATGAAAATGACTGCATATTTGACAAATTTGA TGTTCACTGTATAAAAATGACTGCATATTTGACAAATTTGA < 41bp 1 0.427514693417673 1 0.0974319577217102 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223878 chr8:26223870 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_28087 0 0 1 0 2 Cytosol 1 0.500231860343077 1 0.999536279313845 hm5C_site_28469 DeepMRMD:1;iRNA_m5C:0.999536279313845 28470 chr8 26223870 26223870 1 + G A LUAD 26223881 + 26223861 26223901 41 TCACTGTATGAAAATGACTGCATATTTGACAAATTTGAATG TCACTGTATAAAAATGACTGCATATTTGACAAATTTGAATG < 41bp 1 0.0634634630898166 1 0.0999782681465149 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223881 chr8:26223870 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_28088 0 0 1 0 2 Cytosol 1 0.500227714205728 1 0.999544571588545 hm5C_site_28470 DeepMRMD:1;iRNA_m5C:0.999544571588545 28471 chr8 26223870 26223870 1 + G A LUAD 26223890 + 26223870 26223910 41 GAAAATGACTGCATATTTGACAAATTTGAATGTTGTTGGAA AAAAATGACTGCATATTTGACAAATTTGAATGTTGTTGGAA < 41bp 1 0.203285962758063 1 0.277453482151031 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223890 chr8:26223870 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_28089 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28471 DeepMRMD:1;iRNA_m5C:0.999536712157815 28472 chr1 43917151 43917151 1 + G A LUAD 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT AGCCCAGCAGCCCCGGAGAGCTGAATTTTCCCTATCTGTTT < 41bp 1 0.669821772007015 1 0.131584167480469 experiment 0.66035645598597 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917151 synonymous SNV . 0 29 hm5C_associated_SNPs_28090 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28472 DeepMRMD:1;iRNA_m5C:0.999536712157815 28473 chr19 803570 803570 1 + G A LUAD 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTAACGAGCTTTTCTCTACTT < 41bp 1 0.273738991971413 1 0.198864221572876 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803570 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_28091 0 0 1 0 2 Cytosol 1 0.50023164392098 1 0.999536712158041 hm5C_site_28473 DeepMRMD:1;iRNA_m5C:0.999536712158041 28474 chr15 25213175 25213175 1 + A T LUAD 25213171 + 25213151 25213191 41 GGCATTCTTAGCTGAGACACCAAGAGGTGGTTAAAGCCATA GGCATTCTTAGCTGAGACACCAAGTGGTGGTTAAAGCCATA < 41bp 1 0.516368809529919 1 0.520489573478699 experiment 0.967262380940161 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNURF ENSG00000214265;ENSG00000273173 CDS Human other chr15:25213171 chr15:25213175 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_28092 0 0 0 2 2 cytosol 1 0.500231643955632 0.959020853042602 0.999536712088735 hm5C_site_28474 DeepMRMD:0.959020853042602;iRNA_m5C:0.999536712088735 28475 chr1 41215346 41215346 1 + C T LUAD 41215344 + 41215324 41215364 41 TTCACACAGAAGATAACAAGCGCCGGACTCTACAGGTATTA TTCACACAGAAGATAACAAGCGTCGGACTCTACAGGTATTA < 41bp 1 0.348983843195347 1 0.34994250535965 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFYC ENSG00000066136 CDS Human protein_coding chr1:41215344 chr1:41215346 synonymous SNV . 0 23 hm5C_associated_SNPs_28093 0 0 1 0 1 Ribosome 1 0.500232094054226 1 0.999535811891548 hm5C_site_28475 DeepMRMD:1;iRNA_m5C:0.999535811891548 28476 chr4 184205516 184205516 1 + A T LUAD 184205512 + 184205492 184205532 41 AGTGCGCTCACAGACCTTTTCTCCAGGAGAGCGGAACCAGT AGTGCGCTCACAGACCTTTTCTCCTGGAGAGCGGAACCAGT < 41bp 1 0.50267966048297 1 0.241444826126099 experiment 0.99464067903406 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184205512 chr4:184205516 synonymous SNV . 0 25 hm5C_associated_SNPs_28094 0 0 1 0 0 Cytosol 1 0.500231644048667 1 0.999536711902667 hm5C_site_28476 DeepMRMD:1;iRNA_m5C:0.999536711902667 28477 chr1 242042436 242042436 1 + C A LUAD 242042447 + 242042427 242042467 41 CAGCAGTTCCGAAGAAAGAGCGATTCCCCCACCTCTTTGCC CAGCAGTTCAGAAGAAAGAGCGATTCCCCCACCTCTTTGCC < 41bp 1 0.167185636128156 1 0.137920588254929 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242042447 chr1:242042436 synonymous SNV . 0 10 hm5C_associated_SNPs_28095 0 0 1 0 0 Nucleus 1 0.500231643910178 1 0.999536712179645 hm5C_site_28477 DeepMRMD:1;iRNA_m5C:0.999536712179645 28478 chr16 53504351 53504351 1 + G T LUAD 53504331 + 53504311 53504351 41 TGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGG TGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGT < 41bp 1 0.0967030597953636 1 0.161844432353973 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBL2 ENSG00000103479 CDS Human protein_coding chr16:53504331 chr16:53504351 nonsynonymous SNV 0.981 4 41 hm5C_associated_SNPs_28097 0 0 1 0 1 Ribosome 1 0.500231643921006 1 0.999536712157988 hm5C_site_28478 DeepMRMD:1;iRNA_m5C:0.999536712157988 28479 chr7 44802527 44802527 1 + G T LUAD 44802539 + 44802519 44802559 41 GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT GTCCGCTCTGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT < 41bp 1 0.0251221003891486 1 0.0317598581314087 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802539 chr7:44802527 synonymous SNV . 0 9 hm5C_associated_SNPs_28099 0 0 1 0 1 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_28479 DeepMRMD:1;iRNA_m5C:0.999536712157808 28480 chr10 72294242 72294242 1 + C A LUAD 72294256 + 72294236 72294276 41 AGCTTTCTCCGCATGGTGCCCCAGGGAAGGAGGATGGTGGA AGCTTTATCCGCATGGTGCCCCAGGGAAGGAGGATGGTGGA < 41bp 1 0.350998468283631 1 0.826477110385895 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72294256 chr10:72294242 nonsynonymous SNV 0.861 0 7 hm5C_associated_SNPs_28100 0 0 0 0 2 Ribosome 1 0.50023164390025 0.34704577922821 0.999536712199499 hm5C_site_28480 DeepMRMD:0.34704577922821;iRNA_m5C:0.999536712199499 28481 chr10 89474571 89474571 1 + C T LUAD 89474562 + 89474542 89474582 41 TCCTGAGCGTGTGCTTAAAACCAATTTGTCCACAGTGAGTG TCCTGAGCGTGTGCTTAAAACCAATTTGTTCACAGTGAGTG < 41bp 1 0.216065792301936 1 0.0824171900749207 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474562 chr10:89474571 nonsynonymous SNV 0.995 1 30 hm5C_associated_SNPs_28101 0 0 1 0 2 Cytosol 1 0.500232244469077 1 0.999535511061846 hm5C_site_28481 DeepMRMD:1;iRNA_m5C:0.999535511061846 28482 chr20 49458367 49458367 1 + G T LUAD 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCTGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG < 41bp 1 0.282742235245222 1 0.039393424987793 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458367 nonsynonymous SNV 0.051 1 8 hm5C_associated_SNPs_28102 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28482 DeepMRMD:1;iRNA_m5C:0.999536712157815 28483 chr14 65194591 65194591 1 + G T LUAD 65194597 + 65194577 65194617 41 CCCGTTCAACAGCCGGGCAGCGGCAGGGCCTGCACACCACA CCCGTTCAACAGCCTGGCAGCGGCAGGGCCTGCACACCACA < 41bp 1 0.673202704070537 1 0.84795355796814 experiment 0.653594591858927 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65194597 chr14:65194591 nonsynonymous SNV 0.011 3 15 hm5C_associated_SNPs_28103 0 0 0 0 0 Nucleus 1 0.500231643921092 0.30409288406372 0.999536712157815 hm5C_site_28483 DeepMRMD:0.30409288406372;iRNA_m5C:0.999536712157815 28484 chr10 134016261 134016261 1 + G A LUAD 134016266 + 134016246 134016286 41 TTTGTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC TTTGTCACCCCGGGGACGGGCCGCTTCGTCCCTCGGAAAAC < 41bp 1 0.206087690364331 1 0.136654257774353 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016266 chr10:134016261 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_28104 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921228 1 0.999536712157545 hm5C_site_28484 DeepMRMD:1;iRNA_m5C:0.999536712157545 28485 chr7 142459770 142459770 1 + C A LUAD 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATGACATCATGTTAATCAAGCTCTCCTCAAGTGCAGT < 41bp 1 0.422120303444211 1 0.745936453342438 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459770 nonsynonymous SNV 0.000 1 34 hm5C_associated_SNPs_28105 0 0 0 0 0 Cytosol 1 0.500231643888622 0.508127093315124 0.999536712222756 hm5C_site_28485 DeepMRMD:0.508127093315124;iRNA_m5C:0.999536712222756 28486 chr7 142459770 142459770 1 + C A LUAD 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATGACATCATGTTAATCAAGCTCTCCTCAAGTGCAGTAATC < 41bp 1 0.152186821184633 1 0.0611400008201599 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459770 nonsynonymous SNV 0.000 1 30 hm5C_associated_SNPs_28106 0 0 0 0 0 Cytosol 1 0.500231645643232 1 0.999536708713537 hm5C_site_28486 DeepMRMD:1;iRNA_m5C:0.999536708713537 28487 chr7 142459770 142459770 1 + C A LUAD 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA GACATCATGTTAATCAAGCTCTCCTCAAGTGCAGTAATCAA < 41bp 1 0.430871748764053 1 0.393462896347046 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459770 nonsynonymous SNV 0.000 1 28 hm5C_associated_SNPs_28107 0 0 0 0 0 Cytosol 1 0.500231644350511 1 0.999536711298977 hm5C_site_28487 DeepMRMD:1;iRNA_m5C:0.999536711298977 28488 chr7 142459770 142459770 1 + C A LUAD 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG CATCATGTTAATCAAGCTCTCCTCAAGTGCAGTAATCAACG < 41bp 1 0.379063858628014 1 0.140352219343185 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459770 nonsynonymous SNV 0.000 1 26 hm5C_associated_SNPs_28108 0 0 0 0 0 Cytosol 1 0.500231647225483 1 0.999536705549034 hm5C_site_28488 DeepMRMD:1;iRNA_m5C:0.999536705549034 28489 chr7 142459770 142459770 1 + C A LUAD 142459781 + 142459761 142459801 41 CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCAT CTCTCCTCAAGTGCAGTAATCAACGCCCGCGTGTCCACCAT < 41bp 1 0.694946747697531 1 0.859414458274841 experiment 0.610106504604938 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459781 chr7:142459770 nonsynonymous SNV 0.000 1 10 hm5C_associated_SNPs_28112 0 0 0 0 0 Cytosol 1 0.5002316439211 0.281171083450318 0.999536712157801 hm5C_site_28489 DeepMRMD:0.281171083450318;iRNA_m5C:0.999536712157801 28490 chr7 142459770 142459770 1 + C A LUAD 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCAAGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC < 41bp 1 0.655131096721632 1 0.391899883747101 experiment 0.689737806556736 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459770 nonsynonymous SNV 0.000 1 7 hm5C_associated_SNPs_28113 0 0 0 0 0 Cytosol 1 0.500232500949703 1 0.999534998100594 hm5C_site_28490 DeepMRMD:1;iRNA_m5C:0.999534998100594 28491 chr7 142459770 142459770 1 + C A LUAD 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCAAGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC < 41bp 1 0.519318171159783 1 0.111391633749008 experiment 0.961363657680434 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459770 nonsynonymous SNV 0.000 1 5 hm5C_associated_SNPs_28114 0 0 0 0 0 Cytosol 1 0.50023191774441 1 0.99953616451118 hm5C_site_28491 DeepMRMD:1;iRNA_m5C:0.99953616451118 28492 chr7 142459770 142459770 1 + C A LUAD 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCAAGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT < 41bp 1 0.508352026703683 1 0.0990498960018158 experiment 0.983295946592635 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459770 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_28115 0 0 0 0 0 Cytosol 1 0.500225018220464 1 0.999549963559072 hm5C_site_28492 DeepMRMD:1;iRNA_m5C:0.999549963559072 28493 chr7 142459770 142459770 1 + C A LUAD 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC AGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC < 41bp 1 0.456466537817865 1 0.129038423299789 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459770 nonsynonymous SNV 0.000 1 1 hm5C_associated_SNPs_28117 0 0 0 0 0 Cytosol 1 0.500231643293958 1 0.999536713412085 hm5C_site_28493 DeepMRMD:1;iRNA_m5C:0.999536713412085 28494 chr17 76399740 76399740 1 + G T LUAD 76399746 + 76399726 76399766 41 ATGCTGCATGCCCAGACCTTCCACAGCAACTCTCTTTTGAC ATGCTGCATGCCCATACCTTCCACAGCAACTCTCTTTTGAC < 41bp 1 0.347680839174833 1 0.0599022209644318 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PGS1 ENSG00000087157 CDS Human protein_coding chr17:76399746 chr17:76399740 nonsynonymous SNV 0.990 1 15 hm5C_associated_SNPs_28118 0 0 1 0 1 chromatin 1 0.500232189450202 1 0.999535621099596 hm5C_site_28494 DeepMRMD:1;iRNA_m5C:0.999535621099596 28495 chr18 8825370 8825370 1 + G T LUAD 8825389 + 8825369 8825409 41 GGCCTTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCG GTCCTTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCG < 41bp 1 0.0274750038581243 1 0.184717804193497 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825389 chr18:8825370 nonsynonymous SNV 0.996 3 2 hm5C_associated_SNPs_28119 0 0 0 0 0 Nucleus 1 0.500231642864163 1 0.999536714271674 hm5C_site_28495 DeepMRMD:1;iRNA_m5C:0.999536714271674 28496 chr18 8825370 8825370 1 + G T LUAD 8825390 + 8825370 8825410 41 GCCTTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCGA TCCTTCTCTGTCAGGAATGCCATCTGCTCCGGCCCTGGCGA < 41bp 1 0.10470919194769 1 0.377267360687256 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825390 chr18:8825370 nonsynonymous SNV 0.996 3 1 hm5C_associated_SNPs_28120 0 0 0 0 0 Nucleus 1 0.500231643999281 1 0.999536712001438 hm5C_site_28496 DeepMRMD:1;iRNA_m5C:0.999536712001438 28497 chrX 40457953 40457953 1 + T C LUAD 40457957 + 40457937 40457977 41 ACCTGCTCTTTCTTTCTGAACTGCAAGTGCTACATGATATT ACCTGCTCTTTCTTTCCGAACTGCAAGTGCTACATGATATT < 41bp 1 0.633650022219844 1 0.045349508523941 experiment 0.732699955560312 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40457957 chrX:40457953 synonymous SNV . 0 17 hm5C_associated_SNPs_28121 0 0 1 0 2 Ribosome 1 0.500231640039352 1 0.999536719921297 hm5C_site_28497 DeepMRMD:1;iRNA_m5C:0.999536719921297 28498 chr7 141255319 141255319 1 + G T LUAD 141255330 + 141255310 141255350 41 CTACAGCTGGGCTCTGCCTGCTGACCTGGGGAGGCCATTGG CTACAGCTGTGCTCTGCCTGCTGACCTGGGGAGGCCATTGG < 41bp 1 0.4471746514373 1 0.218439489603043 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141255330 chr7:141255319 nonsynonymous SNV 0.999 2 10 hm5C_associated_SNPs_28122 0 0 1 2 2 Cytosol 1 0.50023168524919 1 0.999536629501619 hm5C_site_28498 DeepMRMD:1;iRNA_m5C:0.999536629501619 28499 chrX 153688718 153688718 1 + C A LUAD 153688731 + 153688711 153688751 41 TGCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGC TGCGGGCACATGTCACGGGGCCCGTCGAGGACAACGCTCGC < 41bp 1 0.0834174627579219 1 0.0652355253696442 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688731 chrX:153688718 synonymous SNV . 0 8 hm5C_associated_SNPs_28123 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643941216 1 0.999536712117567 hm5C_site_28499 DeepMRMD:1;iRNA_m5C:0.999536712117567 28500 chrX 153688718 153688718 1 + C A LUAD 153688732 + 153688712 153688752 41 GCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCT GCGGGCACATGTCACGGGGCCCGTCGAGGACAACGCTCGCT < 41bp 1 0.0334505566899374 1 0.0290593802928925 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688732 chrX:153688718 synonymous SNV . 0 7 hm5C_associated_SNPs_28124 0 0 0 0 0 Endoplasmic reticulum 1 0.500232176839339 1 0.999535646321322 hm5C_site_28500 DeepMRMD:1;iRNA_m5C:0.999535646321322 28501 chrX 153688718 153688718 1 + C A LUAD 153688733 + 153688713 153688753 41 CGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCTG CGGGCACATGTCACGGGGCCCGTCGAGGACAACGCTCGCTG < 41bp 1 0.278784309096602 1 0.185258388519287 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688733 chrX:153688718 synonymous SNV . 0 6 hm5C_associated_SNPs_28125 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643914971 1 0.999536712170057 hm5C_site_28501 DeepMRMD:1;iRNA_m5C:0.999536712170057 28502 chr10 118314923 118314923 1 + G T LUAD 118314913 + 118314893 118314933 41 ATTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGA ATTTCAGGGTTTGGAATGAGCCAAGTCGTGTGCCACCTAGA < 41bp 1 0.303353417285109 1 0.11522963643074 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314913 chr10:118314923 nonsynonymous SNV 0.303 5 31 hm5C_associated_SNPs_28126 0 0 0 0 1 unknown 1 0.500231634877715 1 0.999536730244571 hm5C_site_28502 DeepMRMD:1;iRNA_m5C:0.999536730244571 28503 chr10 118314923 118314923 1 + G T LUAD 118314914 + 118314894 118314934 41 TTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGAT TTTCAGGGTTTGGAATGAGCCAAGTCGTGTGCCACCTAGAT < 41bp 1 0.517000380367893 1 0.324227720499039 experiment 0.965999239264213 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314914 chr10:118314923 nonsynonymous SNV 0.303 5 30 hm5C_associated_SNPs_28127 0 0 0 0 1 unknown 1 0.500231588282349 1 0.999536823435301 hm5C_site_28503 DeepMRMD:1;iRNA_m5C:0.999536823435301 28504 chr10 118314923 118314923 1 + G T LUAD 118314919 + 118314899 118314939 41 GGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTT GGGTTTGGAATGAGCCAAGTCGTGTGCCACCTAGATTTCTT < 41bp 1 0.421587021042804 1 0.0740934014320374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314919 chr10:118314923 nonsynonymous SNV 0.303 5 25 hm5C_associated_SNPs_28128 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28504 DeepMRMD:1;iRNA_m5C:0.999536712157815 28505 chr10 118314923 118314923 1 + G T LUAD 118314925 + 118314905 118314945 41 GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCCAAA GGAATGAGCCAAGTCGTGTGCCACCTAGATTTCTTTCCAAA < 41bp 1 0.125751718690511 1 0.0601807236671448 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314925 chr10:118314923 nonsynonymous SNV 0.303 5 19 hm5C_associated_SNPs_28129 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28505 DeepMRMD:1;iRNA_m5C:0.999536712157815 28506 chr2 24974871 24974871 1 + G C LUAD 24974873 + 24974853 24974893 41 ATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAG ATGGTTCCCCAAGGTGAGCCCAACTTTGCTCCATCTCTAAG < 41bp 1 0.244848112445766 1 0.0657117664813995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24974873 chr2:24974871 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_28130 0 0 0 0 1 Cytosol 1 0.500231643919143 1 0.999536712161714 hm5C_site_28506 DeepMRMD:1;iRNA_m5C:0.999536712161714 28507 chr11 12281424 12281424 1 + C T LUAD 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CATCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.664579960750379 1 0.238115787506104 experiment 0.670840078499242 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281424 nonsynonymous SNV 0.073 0 3 hm5C_associated_SNPs_28131 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28507 DeepMRMD:1;iRNA_m5C:0.999536712157815 28508 chr11 62554750 62554750 1 + G T LUAD 62554734 + 62554714 62554754 41 CCGCCCCGCCCGCCGGTGGGCGCTCTCGGACTACTCGCTGT CCGCCCCGCCCGCCGGTGGGCGCTCTCGGACTACTCTCTGT < 41bp 1 0.181865698806329 1 0.0881326496601105 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62554734 chr11:62554750 synonymous SNV . 0 37 hm5C_associated_SNPs_28132 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28508 DeepMRMD:1;iRNA_m5C:0.999536712157815 28509 chr11 62554750 62554750 1 + G T LUAD 62554736 + 62554716 62554756 41 GCCCCGCCCGCCGGTGGGCGCTCTCGGACTACTCGCTGTAC GCCCCGCCCGCCGGTGGGCGCTCTCGGACTACTCTCTGTAC < 41bp 1 0.219053636810131 1 0.269580125808716 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62554736 chr11:62554750 synonymous SNV . 0 35 hm5C_associated_SNPs_28133 0 0 1 0 0 Ribosome 1 0.50023164392148 1 0.999536712157041 hm5C_site_28509 DeepMRMD:1;iRNA_m5C:0.999536712157041 28510 chr14 77580506 77580506 1 + G A LUAD 77580491 + 77580471 77580511 41 AGGAGTTGATTCGTCAGAATCAGGCAACTCAGGTAGAACTA AGGAGTTGATTCGTCAGAATCAGGCAACTCAGGTAAAACTA < 41bp 1 0.694590107321043 1 0.894917368888855 experiment 0.610819785357915 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CIPC ENSG00000198894 CDS Human protein_coding chr14:77580491 chr14:77580506 nonsynonymous SNV 0.993 3 36 hm5C_associated_SNPs_28134 0 0 1 0 0 nucleolus 1 0.500231654059968 0.21016526222229 0.999536691880064 hm5C_site_28510 DeepMRMD:0.21016526222229;iRNA_m5C:0.999536691880064 28511 chr3 183899749 183899749 1 + G T LUAD 183899729 + 183899709 183899749 41 AACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAG AACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAT < 41bp 1 0.0273679185188173 1 0.0301083922386169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899729 chr3:183899749 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_28135 0 0 1 0 2 Ribosome 1 0.500231643921779 1 0.999536712156442 hm5C_site_28511 DeepMRMD:1;iRNA_m5C:0.999536712156442 28512 chr3 183899749 183899749 1 + G T LUAD 183899730 + 183899710 183899750 41 ACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGT ACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTATT < 41bp 1 0.292008363864929 1 0.0218141973018646 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899730 chr3:183899749 nonsynonymous SNV 0.998 2 40 hm5C_associated_SNPs_28136 0 0 1 0 2 Ribosome 1 0.500231642714136 1 0.999536714571727 hm5C_site_28512 DeepMRMD:1;iRNA_m5C:0.999536714571727 28513 chr3 183899749 183899749 1 + G T LUAD 183899733 + 183899713 183899753 41 AAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGTGCG AAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTATTGCG < 41bp 1 0.60327947903638 1 0.738890528678894 experiment 0.793441041927241 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899733 chr3:183899749 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_28137 0 0 1 0 2 Ribosome 1 0.500231643921092 0.522218942642212 0.999536712157816 hm5C_site_28513 DeepMRMD:0.522218942642212;iRNA_m5C:0.999536712157816 28514 chr1 237052596 237052596 1 + G C LUAD 237052594 + 237052574 237052614 41 GGCAGCTCCGGGGCAAGTACCCGAATCGAGGCTTTCCCAAG GGCAGCTCCGGGGCAAGTACCCCAATCGAGGCTTTCCCAAG < 41bp 1 0.498407139589224 1 0.804300606250763 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 CDS Human protein_coding chr1:237052594 chr1:237052596 synonymous SNV . 0 23 hm5C_associated_SNPs_28139 0 0 1 0 1 Nucleus 1 0.50023164392112 0.391398787498474 0.99953671215776 hm5C_site_28514 DeepMRMD:0.391398787498474;iRNA_m5C:0.99953671215776 28515 chr11 65271249 65271249 1 + G T LUAD 65271247 + 65271227 65271267 41 GGACCAGATCAGGATTTGAGCGGAAGAACGAATGTAACTTT GGACCAGATCAGGATTTGAGCGTAAGAACGAATGTAACTTT < 41bp 1 0.529195790588614 1 0.216034471988678 experiment 0.941608418822773 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271247 chr11:65271249 . . 0 23 hm5C_associated_SNPs_28142 0 0 1 0 0 unknown 1 0.500231643921074 1 0.999536712157852 hm5C_site_28515 DeepMRMD:1;iRNA_m5C:0.999536712157852 28516 chr11 65271249 65271249 1 + G T LUAD 65271255 + 65271235 65271275 41 TCAGGATTTGAGCGGAAGAACGAATGTAACTTTAAGGCAGG TCAGGATTTGAGCGTAAGAACGAATGTAACTTTAAGGCAGG < 41bp 1 0.382150906820627 1 0.323323369026184 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271255 chr11:65271249 . . 0 15 hm5C_associated_SNPs_28143 0 0 1 0 0 unknown 1 0.500231643914169 1 0.999536712171661 hm5C_site_28516 DeepMRMD:1;iRNA_m5C:0.999536712171661 28517 chr1 38171195 38171195 1 + G A LUAD 38171209 + 38171189 38171229 41 CTTGCTGACAGCAAAGAGATCTTCCTCACTGTGCCAGTGGG CTTGCTAACAGCAAAGAGATCTTCCTCACTGTGCCAGTGGG < 41bp 1 0.136854820205044 1 0.041256308555603 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDCA8 ENSG00000134690 CDS Human protein_coding chr1:38171209 chr1:38171195 nonsynonymous SNV 0.981 1 7 hm5C_associated_SNPs_28144 0 0 1 0 0 Ribosome 1 0.500231633912662 1 0.999536732174676 hm5C_site_28517 DeepMRMD:1;iRNA_m5C:0.999536732174676 28518 chr6 32134872 32134872 1 + G T LUAD 32134883 + 32134863 32134903 41 GACGTGGATGAATGTAGGACCAGCATCACCCTCTGCTCGCA GACGTGGATTAATGTAGGACCAGCATCACCCTCTGCTCGCA < 41bp 1 0.468615056884302 1 0.464891076087952 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134883 chr6:32134872 stopgain 1.000 0 10 hm5C_associated_SNPs_28145 0 0 1 0 1 chromatin 1 0.500231643913546 1 0.999536712172908 hm5C_site_28518 DeepMRMD:1;iRNA_m5C:0.999536712172908 28519 chr10 115805007 115805007 1 + C T LUAD 115805016 + 115804996 115805036 41 AACTCGGCCTTCAACCCCATCATCTACTGCCGCAGCCCCGA AACTCGGCCTTTAACCCCATCATCTACTGCCGCAGCCCCGA < 41bp 1 0.112964389028822 1 0.0788163840770721 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADRB1 ENSG00000043591 CDS Human protein_coding chr10:115805016 chr10:115805007 synonymous SNV . 0 12 hm5C_associated_SNPs_28146 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_28519 DeepMRMD:1;iRNA_m5C:0.999536712157815 28520 chr5 176522652 176522652 1 + G T LUAD 176522651 + 176522631 176522671 41 TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGG TCCTCGGAGCAGTGAGGGGCCTCTCTCCTTCCCAGTCCTGG < 41bp 1 0.140220052649786 1 0.0631823241710663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522651 chr5:176522652 synonymous SNV . 0 22 hm5C_associated_SNPs_28147 0 0 1 0 1 Endoplasmic reticulum 1 0.500231640977359 1 0.999536718045282 hm5C_site_28520 DeepMRMD:1;iRNA_m5C:0.999536718045282 28521 chr5 176522652 176522652 1 + G T LUAD 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCCTCTCTCCTTCCCAGTCCTGGTCTCCT < 41bp 1 0.0457471915724374 1 0.237144321203232 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522652 synonymous SNV . 0 16 hm5C_associated_SNPs_28148 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_28521 DeepMRMD:1;iRNA_m5C:0.999536712157818 28522 chr7 43590133 43590133 1 + G A LUAD 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGACGGGTG < 41bp 1 0.256117854275527 1 0.290476500988007 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590133 stopgain 1.000 1 35 hm5C_associated_SNPs_28149 0 0 0 0 2 Cytosol 1 0.500231643026554 1 0.999536713946891 hm5C_site_28522 DeepMRMD:1;iRNA_m5C:0.999536713946891 28523 chr9 135942502 135942502 1 + G T LUAD 135942495 + 135942475 135942515 41 GTGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAG GTGGCTGAGAAGGTGGGTTGCCCTGTGTGTGATGCCGCCAG < 41bp 1 0.260447510888096 1 0.0371949076652527 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942495 chr9:135942502 nonsynonymous SNV 0.168 0 28 hm5C_associated_SNPs_28150 0 0 1 0 1 exosome 1 0.500231663507142 1 0.999536672985716 hm5C_site_28523 DeepMRMD:1;iRNA_m5C:0.999536672985716 28524 chr9 135942502 135942502 1 + G T LUAD 135942496 + 135942476 135942516 41 TGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGG TGGCTGAGAAGGTGGGTTGCCCTGTGTGTGATGCCGCCAGG < 41bp 1 0.255886736392176 1 0.168404340744019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942496 chr9:135942502 nonsynonymous SNV 0.168 0 27 hm5C_associated_SNPs_28151 0 0 1 0 1 exosome 1 0.500231123224309 1 0.999537753551383 hm5C_site_28524 DeepMRMD:1;iRNA_m5C:0.999537753551383 28525 chr9 135942502 135942502 1 + G T LUAD 135942497 + 135942477 135942517 41 GGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA GGCTGAGAAGGTGGGTTGCCCTGTGTGTGATGCCGCCAGGA < 41bp 1 0.528523046351836 1 0.459952920675278 experiment 0.942953907296328 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942497 chr9:135942502 nonsynonymous SNV 0.168 0 26 hm5C_associated_SNPs_28152 0 0 1 0 1 exosome 1 0.500231759826878 1 0.999536480346245 hm5C_site_28525 DeepMRMD:1;iRNA_m5C:0.999536480346245 28526 chr9 135942502 135942502 1 + G T LUAD 135942509 + 135942489 135942529 41 GGGTTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTC GGGTTGCCCTGTGTGTGATGCCGCCAGGATGGCCCAGTGTC < 41bp 1 0.166006467684997 1 0.0943680107593536 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942509 chr9:135942502 nonsynonymous SNV 0.168 0 14 hm5C_associated_SNPs_28153 0 0 1 0 1 exosome 1 0.500231631545923 1 0.999536736908155 hm5C_site_28526 DeepMRMD:1;iRNA_m5C:0.999536736908155 28527 chr9 135942502 135942502 1 + G T LUAD 135942512 + 135942492 135942532 41 TTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTCTGA TTGCCCTGTGTGTGATGCCGCCAGGATGGCCCAGTGTCTGA < 41bp 1 0.441072252701721 1 0.319344103336334 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942512 chr9:135942502 nonsynonymous SNV 0.168 0 11 hm5C_associated_SNPs_28155 0 0 1 0 1 exosome 1 0.500383107730842 1 0.999233784538315 hm5C_site_28527 DeepMRMD:1;iRNA_m5C:0.999233784538315 28528 chr9 135942502 135942502 1 + G T LUAD 135942521 + 135942501 135942541 41 GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTG GTGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTG < 41bp 1 0.293204395914384 1 0.0599570274353027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942521 chr9:135942502 nonsynonymous SNV 0.168 0 2 hm5C_associated_SNPs_28156 0 0 1 0 1 exosome 1 0.500231594635176 1 0.999536810729648 hm5C_site_28528 DeepMRMD:1;iRNA_m5C:0.999536810729648 28529 chr9 135942502 135942502 1 + G T LUAD 135942522 + 135942502 135942542 41 GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGA TGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGA < 41bp 1 0.369445504304009 1 0.207078605890274 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942522 chr9:135942502 nonsynonymous SNV 0.168 0 1 hm5C_associated_SNPs_28157 0 0 1 0 1 exosome 1 0.500226153469821 1 0.999547693060358 hm5C_site_28529 DeepMRMD:1;iRNA_m5C:0.999547693060358 28530 chr7 142459849 142459849 1 + C A LUAD 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTATGGCT < 41bp 1 0.60365918217393 1 0.211143165826797 experiment 0.79268163565214 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459849 nonsynonymous SNV 0.146 5 36 hm5C_associated_SNPs_28158 0 0 0 0 1 Cytosol 1 0.500231643921225 1 0.99953671215755 hm5C_site_28530 DeepMRMD:1;iRNA_m5C:0.99953671215755 28531 chr7 142459849 142459849 1 + C A LUAD 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACGAAGTGCCTCATCTATGGCTGGGGCAA < 41bp 1 0.382716106401357 1 0.0521213412284851 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459849 nonsynonymous SNV 0.146 5 29 hm5C_associated_SNPs_28159 0 0 0 0 1 Cytosol 1 0.500231643904339 1 0.999536712191323 hm5C_site_28531 DeepMRMD:1;iRNA_m5C:0.999536712191323 28532 chr7 142459849 142459849 1 + C A LUAD 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAGTGCCTCATCTATGGCTGGGGCAAC < 41bp 1 0.467678256081224 1 0.058428019285202 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459849 nonsynonymous SNV 0.146 5 28 hm5C_associated_SNPs_28160 0 0 0 0 1 Cytosol 1 0.500231641245595 1 0.999536717508809 hm5C_site_28532 DeepMRMD:1;iRNA_m5C:0.999536717508809 28533 chr7 142459849 142459849 1 + C A LUAD 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAGTGCCTCATCTATGGCTGGGGCAACAC < 41bp 1 0.553792551643329 1 0.0233117043972015 experiment 0.892414896713343 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459849 nonsynonymous SNV 0.146 5 26 hm5C_associated_SNPs_28161 0 0 0 0 1 Cytosol 1 0.500231766597646 1 0.999536466804708 hm5C_site_28533 DeepMRMD:1;iRNA_m5C:0.999536466804708 28534 chr7 142459849 142459849 1 + C A LUAD 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTATGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA < 41bp 1 0.374399790394299 1 0.176778614521027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459849 nonsynonymous SNV 0.146 5 8 hm5C_associated_SNPs_28163 0 0 0 0 1 Cytosol 1 0.500231643958921 1 0.999536712082159 hm5C_site_28534 DeepMRMD:1;iRNA_m5C:0.999536712082159 28535 chr7 142459849 142459849 1 + C A LUAD 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTATGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG < 41bp 1 0.396077379281226 1 0.473762691020966 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459849 nonsynonymous SNV 0.146 5 3 hm5C_associated_SNPs_28165 0 0 0 0 1 Cytosol 1 0.500233170398589 1 0.999533659202823 hm5C_site_28535 DeepMRMD:1;iRNA_m5C:0.999533659202823 28536 chr7 150768924 150768924 1 + G A LUAD 150768915 + 150768895 150768935 41 CTGCTGGTCTTTGAGGAGGCCTTCTTCTCGGTGAGGGCTCT CTGCTGGTCTTTGAGGAGGCCTTCTTCTCAGTGAGGGCTCT < 41bp 1 0.0777828567978536 1 0.0802178382873535 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150768915 chr7:150768924 synonymous SNV . 0 30 hm5C_associated_SNPs_28166 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_28536 DeepMRMD:1;iRNA_m5C:0.999536712157814 28537 chr19 17615394 17615394 1 + C A LUAD 17615397 + 17615377 17615417 41 GAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTCGCCCT GAGGCAGTCTACACTCGAATCTGCTCGGGCGCCTTCGCCCT < 41bp 1 0.410804507916626 1 0.139986753463745 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17615397 chr19:17615394 synonymous SNV . 0 18 hm5C_associated_SNPs_28167 0 0 1 0 0 Endoplasmic reticulum 1 0.500231653544488 1 0.999536692911024 hm5C_site_28537 DeepMRMD:1;iRNA_m5C:0.999536692911024 28538 chr17 17697997 17697997 1 + C G LUAD 17698000 + 17697980 17698020 41 AGAGCCTACACGGCAGTCTGCCGCTCGACAGCTTCTCCAAG AGAGCCTACACGGCAGTGTGCCGCTCGACAGCTTCTCCAAG < 41bp 1 0.0644976402476602 1 0.0124459266662598 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17698000 chr17:17697997 nonsynonymous SNV 0.125 4 18 hm5C_associated_SNPs_28168 0 0 1 0 0 chromatin 1 0.500231643622332 1 0.999536712755336 hm5C_site_28538 DeepMRMD:1;iRNA_m5C:0.999536712755336 28539 chr7 69064861 69064861 1 + G A LUAD 69064849 + 69064829 69064869 41 TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGAAGGAAGCG < 41bp 1 0.157918629741951 1 0.0421666204929352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064849 chr7:69064861 synonymous SNV . 0 33 hm5C_associated_SNPs_28169 0 0 0 0 1 Nucleus 1 0.50023162249646 1 0.999536755007081 hm5C_site_28539 DeepMRMD:1;iRNA_m5C:0.999536755007081 28540 chr12 53700879 53700879 1 + G C LUAD 53700859 + 53700839 53700879 41 GCGGCTTCACTGGCGGTCACCACACCCGAGAGGGTGCCTTG GCGGCTTCACTGGCGGTCACCACACCCGAGAGGGTGCCTTC < 41bp 1 0.570113780663025 1 0.374717950820923 experiment 0.85977243867395 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700859 chr12:53700879 nonsynonymous SNV 0.988 3 41 hm5C_associated_SNPs_28170 0 0 1 0 0 cytosol 1 0.500225544549564 1 0.999548910900873 hm5C_site_28540 DeepMRMD:1;iRNA_m5C:0.999548910900873 28541 chr2 235951006 235951006 1 + G T LUAD 235950995 + 235950975 235951015 41 TGCAGCTGTGGGGGAAGCACCAGTTCGTTTTGTCCAGGCCC TGCAGCTGTGGGGGAAGCACCAGTTCGTTTTTTCCAGGCCC < 41bp 1 0.249516317127179 1 0.553862988948822 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235950995 chr2:235951006 nonsynonymous SNV 0.600 3 32 hm5C_associated_SNPs_28171 0 0 1 0 0 cytosol 1 0.500231643921092 0.892274022102356 0.999536712157815 hm5C_site_28541 DeepMRMD:0.892274022102356;iRNA_m5C:0.999536712157815 28542 chr7 98564703 98564703 1 + A C LUAD 98564687 + 98564667 98564707 41 CCTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGATGAT CCTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGCTGAT < 41bp 1 0.0127895269665802 1 0.101994097232819 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98564687 chr7:98564703 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_28172 0 0 1 0 2 Nucleus 1 0.500231644560571 1 0.999536710878857 hm5C_site_28542 DeepMRMD:1;iRNA_m5C:0.999536710878857 28543 chr19 40884006 40884006 1 + G T LUAD 40884016 + 40883996 40884036 41 TTTCCTGAGGGACTGGGACTCCCCTTACAGCCATGACCTTG TTTCCTGAGGTACTGGGACTCCCCTTACAGCCATGACCTTG < 41bp 1 0.431312103948693 1 0.162058264017105 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40884016 chr19:40884006 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_28173 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_28543 DeepMRMD:1;iRNA_m5C:0.999536712157815 28544 chr19 40884006 40884006 1 + G T LUAD 40884018 + 40883998 40884038 41 TCCTGAGGGACTGGGACTCCCCTTACAGCCATGACCTTGAC TCCTGAGGTACTGGGACTCCCCTTACAGCCATGACCTTGAC < 41bp 1 0.230669762037123 1 0.213762879371643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40884018 chr19:40884006 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_28174 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_28544 DeepMRMD:1;iRNA_m5C:0.999536712157815 28545 chr5 122161790 122161790 1 + G T LUAD 122161793 + 122161773 122161813 41 GGCAGAAATGGGAAGATGCTCAAATTACTTTGCTCAAAAAA GGCAGAAATGGGAAGATTCTCAAATTACTTTGCTCAAAAAA < 41bp 1 0.507478930205525 1 0.508465051651001 experiment 0.985042139588951 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122161793 chr5:122161790 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_28175 0 0 1 0 1 Ribosome 1 0.500231643917432 0.983069896697998 0.999536712165136 hm5C_site_28545 DeepMRMD:0.983069896697998;iRNA_m5C:0.999536712165136 28546 chr5 122161791 122161791 1 + C G LUAD 122161793 + 122161773 122161813 41 GGCAGAAATGGGAAGATGCTCAAATTACTTTGCTCAAAAAA GGCAGAAATGGGAAGATGGTCAAATTACTTTGCTCAAAAAA < 41bp 1 0.358482681819969 1 0.273212403059006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122161793 chr5:122161791 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_28176 0 0 1 0 1 Ribosome 1 0.500231643341832 1 0.999536713316335 hm5C_site_28546 DeepMRMD:1;iRNA_m5C:0.999536713316335 28547 chr12 31236920 31236920 1 + G A LUAD 31236904 + 31236884 31236924 41 GTCTTCTTCCTGCGAAGGGGCTGCAGGCACCCCGAGGCCTG GTCTTCTTCCTGCGAAGGGGCTGCAGGCACCCCGAGACCTG < 41bp 1 0.686559643590155 1 0.480934500694275 experiment 0.626880712819691 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31236904 chr12:31236920 nonsynonymous SNV . 0 37 hm5C_associated_SNPs_28177 0 0 1 0 1 Cytosol 1 0.500231116422134 1 0.999537767155731 hm5C_site_28547 DeepMRMD:1;iRNA_m5C:0.999537767155731 28548 chr2 85133174 85133174 1 + C G LUAD 85133155 + 85133135 85133175 41 TAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCCA TAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCGA < 41bp 1 0.470467278251322 1 0.253531277179718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMSB10 ENSG00000034510 CDS Human protein_coding chr2:85133155 chr2:85133174 synonymous SNV . 0 40 hm5C_associated_SNPs_28178 0 0 1 0 1 Ribosome 1 0.500231643921108 1 0.999536712157785 hm5C_site_28548 DeepMRMD:1;iRNA_m5C:0.999536712157785 28549 chr5 64881965 64881965 1 + C T LUAD 64881981 + 64881961 64882001 41 GGATCAAATACTAATGGATCCCAGTTTTTCATAACGGTAGT GGATTAAATACTAATGGATCCCAGTTTTTCATAACGGTAGT < 41bp 1 0.276618221402497 1 0.23266538977623 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64881981 chr5:64881965 nonsynonymous SNV 0.989 2 5 hm5C_associated_SNPs_28179 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_28549 DeepMRMD:1;iRNA_m5C:0.999536712157815 28550 chr6 30545863 30545863 1 + A G LUAD 30545872 + 30545852 30545892 41 GCAAAAAAAAAAGCGAGATACCCGAAAAGGCAGGCGGAAGA GCAAAAAAAAAGGCGAGATACCCGAAAAGGCAGGCGGAAGA < 41bp 1 0.511406488112374 1 0.370166510343552 experiment 0.977187023775252 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545872 chr6:30545863 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_28180 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643876002 1 0.999536712247995 hm5C_site_28550 DeepMRMD:1;iRNA_m5C:0.999536712247995 28551 chr2 46607470 46607470 1 + G C LUAD 46607459 + 46607439 46607479 41 GCCCCATCTGCCCCGAGGAGCGGCTCTTGGCGGAGAACCCA GCCCCATCTGCCCCGAGGAGCGGCTCTTGGCCGAGAACCCA < 41bp 1 0.406084989220286 1 0.344533920288086 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607459 chr2:46607470 synonymous SNV . 0 32 hm5C_associated_SNPs_28181 0 0 0 0 0 Cytosol 1 0.500231643921101 1 0.999536712157798 hm5C_site_28551 DeepMRMD:1;iRNA_m5C:0.999536712157798 28552 chr4 30725930 30725930 1 + G A LUAD 30725920 + 30725900 30725940 41 CACTGTGGAGGCTTCTAAGCCAAATGGACAGAGGTATGATA CACTGTGGAGGCTTCTAAGCCAAATGGACAAAGGTATGATA < 41bp 1 0.145525034938322 1 0.670602977275848 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCDH7 ENSG00000169851 CDS Human protein_coding chr4:30725920 chr4:30725930 synonymous SNV . 0 31 hm5C_associated_SNPs_28182 0 0 1 0 0 Ribosome 1 0.500231643922466 0.658794045448304 0.999536712155068 hm5C_site_28552 DeepMRMD:0.658794045448304;iRNA_m5C:0.999536712155068 28553 chr8 145583767 145583767 1 + C T LUAD 145583775 + 145583755 145583795 41 TGCCCTTCTGGTCGCTTCAGCTGCTGCCTTCCAGGGTCTTC TGCCCTTCTGGTTGCTTCAGCTGCTGCCTTCCAGGGTCTTC < 41bp 1 0.330827213599506 1 0.0618072748184204 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145583775 chr8:145583767 synonymous SNV . 0 13 hm5C_associated_SNPs_28183 0 0 1 0 0 Ribosome 1 0.500231655074893 1 0.999536689850214 hm5C_site_28553 DeepMRMD:1;iRNA_m5C:0.999536689850214 28554 chr7 142460405 142460405 1 + A T LUAD 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCATGGA < 41bp 1 0.124368806353398 1 0.122731268405914 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460405 nonsynonymous SNV 0.985 5 38 hm5C_associated_SNPs_28184 0 0 0 0 1 Cytosol 1 0.500231643919204 1 0.999536712161593 hm5C_site_28554 DeepMRMD:1;iRNA_m5C:0.999536712161593 28555 chr7 142460405 142460405 1 + A T LUAD 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCATGGATTC < 41bp 1 0.0403366150894417 1 0.104938924312592 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460405 nonsynonymous SNV 0.985 5 35 hm5C_associated_SNPs_28185 0 0 0 0 1 Cytosol 1 0.500231642271672 1 0.999536715456655 hm5C_site_28555 DeepMRMD:1;iRNA_m5C:0.999536715456655 28556 chr7 142460405 142460405 1 + A T LUAD 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCATGGATTCA < 41bp 1 0.62303869147421 1 0.427725791931152 experiment 0.753922617051579 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460405 nonsynonymous SNV 0.985 5 34 hm5C_associated_SNPs_28186 0 0 0 0 1 Cytosol 1 0.500231666850461 1 0.999536666299077 hm5C_site_28556 DeepMRMD:1;iRNA_m5C:0.999536666299077 28557 chr7 142460405 142460405 1 + A T LUAD 142460403 + 142460383 142460423 41 GTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGTGAT GTGGGCTTCCTTGAGGGAGGCATGGATTCATGTCAGGTGAT < 41bp 1 0.306816954134783 1 0.254401296377182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460403 chr7:142460405 nonsynonymous SNV 0.985 5 23 hm5C_associated_SNPs_28187 0 0 0 0 1 Cytosol 1 0.500231644721193 1 0.999536710557613 hm5C_site_28557 DeepMRMD:1;iRNA_m5C:0.999536710557613 28558 chr7 142460405 142460405 1 + A T LUAD 142460411 + 142460391 142460431 41 CCTTGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA CCTTGAGGGAGGCATGGATTCATGTCAGGTGATTTGACCAA < 41bp 1 0.524298546390867 1 0.256332397460938 experiment 0.951402907218266 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460411 chr7:142460405 nonsynonymous SNV 0.985 5 15 hm5C_associated_SNPs_28188 0 0 0 0 1 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_28558 DeepMRMD:1;iRNA_m5C:0.999536712157813 28559 chr7 142460405 142460405 1 + A T LUAD 142460416 + 142460396 142460436 41 AGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAACCCTT AGGGAGGCATGGATTCATGTCAGGTGATTTGACCAACCCTT < 41bp 1 0.632401821723052 1 0.813504219055176 experiment 0.735196356553896 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460416 chr7:142460405 nonsynonymous SNV 0.985 5 10 hm5C_associated_SNPs_28189 0 0 0 0 1 Cytosol 1 0.500231643922042 0.372991561889648 0.999536712155916 hm5C_site_28559 DeepMRMD:0.372991561889648;iRNA_m5C:0.999536712155916 28560 chr20 3804637 3804637 1 + G T LUAD 3804653 + 3804633 3804673 41 TTCCGCCTGGCAGCAGAGAACCCTTTCCAGGAGCCACGGAC TTCCTCCTGGCAGCAGAGAACCCTTTCCAGGAGCCACGGAC < 41bp 1 0.136791205661632 1 0.0564450621604919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3804653 chr20:3804637 nonsynonymous SNV 0.606 0 5 hm5C_associated_SNPs_28190 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28560 DeepMRMD:1;iRNA_m5C:0.999536712157815 28561 chr7 138944042 138944042 1 + G T LUAD 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGATATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.452352415071035 1 0.50260978937149 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944042 nonsynonymous SNV 0.997 0 5 hm5C_associated_SNPs_28191 0 0 1 0 2 Cytosol 1 0.500231643921092 0.99478042125702 0.999536712157815 hm5C_site_28561 DeepMRMD:0.99478042125702;iRNA_m5C:0.999536712157815 28562 chr12 54333267 54333267 1 + G T LUAD 54333251 + 54333231 54333271 41 TCCTACCAGGCGATGCCCGGCTACCTGGACGTGTCGGTGGT TCCTACCAGGCGATGCCCGGCTACCTGGACGTGTCGTTGGT < 41bp 1 0.183285114529181 1 0.145181626081467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HOXC13 ENSG00000123364 CDS Human protein_coding chr12:54333251 chr12:54333267 nonsynonymous SNV 0.915 3 37 hm5C_associated_SNPs_28192 0 0 0 0 0 nucleus 1 0.500231643278364 1 0.999536713443273 hm5C_site_28562 DeepMRMD:1;iRNA_m5C:0.999536713443273 28563 chr5 15936997 15936997 1 + G T LUAD 15937013 + 15936993 15937033 41 CACGGTGTGGAGTACCTCGCCAAGAACTGCACCAAACTCAA CACGTTGTGGAGTACCTCGCCAAGAACTGCACCAAACTCAA < 41bp 1 0.53453680114006 1 0.61494255065918 experiment 0.930926397719881 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXL7 ENSG00000183580 CDS Human protein_coding chr5:15937013 chr5:15936997 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_28193 0 0 0 0 0 exosome 1 0.500231643921092 0.77011489868164 0.999536712157815 hm5C_site_28563 DeepMRMD:0.77011489868164;iRNA_m5C:0.999536712157815 28564 chr10 93695424 93695424 1 + C T LUAD 93695421 + 93695401 93695441 41 TTTGTTATTTCAGGCTAGATCGCCTTTTTATTTTACTGGAT TTTGTTATTTCAGGCTAGATCGCTTTTTTATTTTACTGGAT < 41bp 1 0.25018245083059 1 0.335076570510864 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93695421 chr10:93695424 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_28194 0 0 1 0 1 Nucleus 1 0.500231643926346 1 0.999536712147309 hm5C_site_28564 DeepMRMD:1;iRNA_m5C:0.999536712147309 28565 chrX 128691359 128691359 1 + C A LUAD 128691345 + 128691325 128691365 41 GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCATGATGA < 41bp 1 0.302005378584358 1 0.0591717958450317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128691345 chrX:128691359 nonsynonymous SNV 0.999 3 35 hm5C_associated_SNPs_28195 0 0 1 0 2 Cytosol 1 0.500231643921361 1 0.999536712157278 hm5C_site_28565 DeepMRMD:1;iRNA_m5C:0.999536712157278 28566 chr7 75933446 75933446 1 + G T LUAD 75933438 + 75933418 75933458 41 AGTCACCTTCGAGTCGCGGGCCCAGCTTGGGGGCCCAGAAG AGTCACCTTCGAGTCGCGGGCCCAGCTTTGGGGCCCAGAAG < 41bp 1 0.248696803348536 1 0.170362800359726 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933438 chr7:75933446 nonsynonymous SNV 0.837 4 29 hm5C_associated_SNPs_28196 1 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28566 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 28567 chr7 75933446 75933446 1 + G T LUAD 75933439 + 75933419 75933459 41 GTCACCTTCGAGTCGCGGGCCCAGCTTGGGGGCCCAGAAGC GTCACCTTCGAGTCGCGGGCCCAGCTTTGGGGCCCAGAAGC < 41bp 1 0.272305771677829 1 0.44756606221199 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933439 chr7:75933446 nonsynonymous SNV 0.837 4 28 hm5C_associated_SNPs_28197 1 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28567 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 28568 chr7 75933446 75933446 1 + G T LUAD 75933440 + 75933420 75933460 41 TCACCTTCGAGTCGCGGGCCCAGCTTGGGGGCCCAGAAGCT TCACCTTCGAGTCGCGGGCCCAGCTTTGGGGCCCAGAAGCT < 41bp 1 0.511749000685976 1 0.202042430639267 experiment 0.976501998628049 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933440 chr7:75933446 nonsynonymous SNV 0.837 4 27 hm5C_associated_SNPs_28198 1 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28568 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 28569 chr7 75933446 75933446 1 + G T LUAD 75933451 + 75933431 75933471 41 TCGCGGGCCCAGCTTGGGGGCCCAGAAGCTGCAAAATCCGA TCGCGGGCCCAGCTTTGGGGCCCAGAAGCTGCAAAATCCGA < 41bp 1 0.136640633018791 1 0.0410085618495941 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933451 chr7:75933446 nonsynonymous SNV 0.837 4 16 hm5C_associated_SNPs_28199 1 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28569 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 28570 chr7 75933446 75933446 1 + G T LUAD 75933452 + 75933432 75933472 41 CGCGGGCCCAGCTTGGGGGCCCAGAAGCTGCAAAATCCGAT CGCGGGCCCAGCTTTGGGGCCCAGAAGCTGCAAAATCCGAT < 41bp 1 0.351946402462154 1 0.115142822265625 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933452 chr7:75933446 nonsynonymous SNV 0.837 4 15 hm5C_associated_SNPs_28200 1 0 1 0 0 Cytosol 1 0.500231643911805 1 0.999536712176389 hm5C_site_28570 DeepMRMD:1;iRNA_m5C:0.999536712176389 not specified not specified 28571 chr1 171535858 171535858 1 + G T LUAD 171535864 + 171535844 171535884 41 ACAAGAGAAACCAAGCCCAGCTACAGTCAGAAGCACAGATC ACAAGAGAAACCAATCCCAGCTACAGTCAGAAGCACAGATC < 41bp 1 0.445159074529015 1 0.551188766956329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171535864 chr1:171535858 nonsynonymous SNV 0.283 1 15 hm5C_associated_SNPs_28202 0 0 1 0 0 Cytosol 1 0.500231643919144 0.897622466087342 0.999536712161713 hm5C_site_28571 DeepMRMD:0.897622466087342;iRNA_m5C:0.999536712161713 28572 chr7 129096290 129096290 1 + G T LUAD 129096284 + 129096264 129096304 41 CCTGTTTCTTCCTTAGTTTACCCTCGGTGGATTTGAGCATC CCTGTTTCTTCCTTAGTTTACCCTCGTTGGATTTGAGCATC < 41bp 1 0.128652408149574 1 0.0369439125061035 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129096284 chr7:129096290 nonsynonymous SNV 0.990 5 27 hm5C_associated_SNPs_28203 0 0 1 0 1 Nucleus 1 0.50023164392113 1 0.999536712157739 hm5C_site_28572 DeepMRMD:1;iRNA_m5C:0.999536712157739 28573 chr8 100182324 100182324 1 + C T LUAD 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTATCTGTACCAGTTATTCCCTCTTTCAGC < 41bp 1 0.0768963438340991 1 0.0688380897045135 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182324 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_28204 0 0 1 0 2 Nucleus 1 0.500231646752391 1 0.999536706495218 hm5C_site_28573 DeepMRMD:1;iRNA_m5C:0.999536706495218 28574 chr17 78081599 78081599 1 + C A LUAD 78081601 + 78081581 78081621 41 GTCTCCTGCATGTCCCAGCCCGGTGCGAACCTCTACGGGTC GTCTCCTGCATGTCCCAGACCGGTGCGAACCTCTACGGGTC < 41bp 1 0.522450283279313 1 0.527576923370361 experiment 0.955099433441374 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78081601 chr17:78081599 nonsynonymous SNV 0.019 1 19 hm5C_associated_SNPs_28205 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.944846153259278 0.999536712157815 hm5C_site_28574 DeepMRMD:0.944846153259278;iRNA_m5C:0.999536712157815 28575 chr4 183696210 183696210 1 + G A LUAD 183696207 + 183696187 183696227 41 CCGACGGTTGCCAAAAGAAACATGACTTTGCCTGGCGAGAA CCGACGGTTGCCAAAAGAAACATAACTTTGCCTGGCGAGAA < 41bp 1 0.208167135901784 1 0.120853781700134 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183696207 chr4:183696210 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_28206 0 0 0 0 0 nucleus 1 0.500231644671003 1 0.999536710657994 hm5C_site_28575 DeepMRMD:1;iRNA_m5C:0.999536710657994 28576 chr17 4799509 4799509 1 + C T LUAD 4799505 + 4799485 4799525 41 CAGTCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGA CAGTCCTTTGCCGACCTCCCCCACTGCCCTCTGCTGGTCGA < 41bp 1 0.138146715675961 1 0.055078387260437 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799505 chr17:4799509 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_28207 0 0 1 0 1 Ribosome 1 0.500231643920602 1 0.999536712158797 hm5C_site_28576 DeepMRMD:1;iRNA_m5C:0.999536712158797 28577 chr17 4799509 4799509 1 + C T LUAD 4799508 + 4799488 4799528 41 TCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGACCT TCCTTTGCCGACCTCCCCCACTGCCCTCTGCTGGTCGACCT < 41bp 1 0.348751956886046 1 0.142670273780823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799508 chr17:4799509 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_28208 0 0 1 0 1 Ribosome 1 0.500231644856485 1 0.999536710287031 hm5C_site_28577 DeepMRMD:1;iRNA_m5C:0.999536710287031 28578 chrX 48457770 48457770 1 + G T LUAD 48457763 + 48457743 48457783 41 CTTTGAGGATGATCCTCGGGCCCTGGGGGCCCGTGGGCACC CTTTGAGGATGATCCTCGGGCCCTGGGTGCCCGTGGGCACC < 41bp 1 0.141088548628494 1 0.0524393320083618 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457763 chrX:48457770 synonymous SNV . 0 28 hm5C_associated_SNPs_28209 0 0 1 0 1 Ribosome 1 0.50023164392002 1 0.99953671215996 hm5C_site_28578 DeepMRMD:1;iRNA_m5C:0.99953671215996 28579 chrX 48457770 48457770 1 + G T LUAD 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TGATCCTCGGGCCCTGGGTGCCCGTGGGCACCGTCGTTCTG < 41bp 1 0.36102192554811 1 0.0421481132507324 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457770 synonymous SNV . 0 19 hm5C_associated_SNPs_28210 0 0 1 0 1 Ribosome 1 0.500231643893177 1 0.999536712213646 hm5C_site_28579 DeepMRMD:1;iRNA_m5C:0.999536712213646 28580 chrX 48457770 48457770 1 + G T LUAD 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT GATCCTCGGGCCCTGGGTGCCCGTGGGCACCGTCGTTCTGT < 41bp 1 0.38482027895827 1 0.409545600414276 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457770 synonymous SNV . 0 18 hm5C_associated_SNPs_28211 0 0 1 0 1 Ribosome 1 0.500231646751361 1 0.999536706497278 hm5C_site_28580 DeepMRMD:1;iRNA_m5C:0.999536706497278 28581 chr1 2411353 2411353 1 + G A LUAD 2411365 + 2411345 2411385 41 TGGCCTGCGCTACCTCATGGCCGGCATCAGCGACGAGGACA TGGCCTGCACTACCTCATGGCCGGCATCAGCGACGAGGACA < 41bp 1 0.178242341195359 1 0.105415225028992 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2411365 chr1:2411353 nonsynonymous SNV 0.995 3 9 hm5C_associated_SNPs_28213 0 0 0 0 0 nucleus 1 0.500231643839634 1 0.999536712320732 hm5C_site_28581 DeepMRMD:1;iRNA_m5C:0.999536712320732 28582 chr7 43590134 43590134 1 + C A LUAD 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGAGGGTG < 41bp 1 0.259627348693162 1 0.148863166570663 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590134 synonymous SNV . 0 36 hm5C_associated_SNPs_28214 0 0 0 0 2 Cytosol 1 0.500231607486693 1 0.999536785026613 hm5C_site_28582 DeepMRMD:1;iRNA_m5C:0.999536785026613 28583 chr2 239038812 239038812 1 + G T LUAD 239038799 + 239038779 239038819 41 GGAGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA GGAGCTCAGGCCCCACGGAGCAGGCGGCCTGGATGTACTCA < 41bp 1 0.560728846178556 1 0.92312479019165 experiment 0.878542307642888 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ESPNL ENSG00000144488 CDS Human protein_coding chr2:239038799 chr2:239038812 nonsynonymous SNV 0.596 2 34 hm5C_associated_SNPs_28215 0 0 0 0 1 exosome 1 0.500231643921092 0.1537504196167 0.999536712157815 hm5C_site_28583 DeepMRMD:0.1537504196167;iRNA_m5C:0.999536712157815 28584 chr1 212619334 212619334 1 + A G LUAD 212619354 + 212619334 212619374 41 AAGGATGAGTTCTGATGTTCCCCCTGCAGGAGCAGGTTCTT GAGGATGAGTTCTGATGTTCCCCCTGCAGGAGCAGGTTCTT < 41bp 1 0.338733775854351 1 0.151954114437103 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NENF ENSG00000117691 CDS Human protein_coding chr1:212619354 chr1:212619334 nonsynonymous SNV 0.971 2 1 hm5C_associated_SNPs_28216 0 0 1 0 0 Cytosol 1 0.50023269544997 1 0.999534609100059 hm5C_site_28584 DeepMRMD:1;iRNA_m5C:0.999534609100059 28585 chr9 137701052 137701052 1 + A T LUAD 137701041 + 137701021 137701061 41 TTCTCTAGGGCGAGAAAGGCCCACAAGGCCCAGCTGGCCGA TTCTCTAGGGCGAGAAAGGCCCACAAGGCCCTGCTGGCCGA < 41bp 1 0.270570115716143 1 0.309172600507736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137701041 chr9:137701052 synonymous SNV . 0 32 hm5C_associated_SNPs_28217 0 0 0 0 2 Nucleus 1 0.500231653916492 1 0.999536692167017 hm5C_site_28585 DeepMRMD:1;iRNA_m5C:0.999536692167017 28586 chr5 118877683 118877683 1 + G T LUAD 118877694 + 118877674 118877714 41 CTACGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA CTACGCCAATCTCTGAAGGGCACACTACACTATTAATAAAA < 41bp 1 0.153383024482577 1 0.0866518020629883 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118877694 chr5:118877683 nonsynonymous SNV 0.998 0 10 hm5C_associated_SNPs_28218 0 0 1 1 1 Cytosol 1 0.500231643921055 1 0.999536712157889 hm5C_site_28586 DeepMRMD:1;iRNA_m5C:0.999536712157889 28587 chr7 129064950 129064950 1 + A T LUAD 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGCTCCTGAGGGTCGCTATATGCAGGATGTCTAC < 41bp 1 0.606020587181843 1 0.382711678743362 experiment 0.787958825636313 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064950 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_28220 0 0 0 0 2 chromatin 1 0.500231643715513 1 0.999536712568975 hm5C_site_28587 DeepMRMD:1;iRNA_m5C:0.999536712568975 28588 chr19 1913034 1913034 1 + G T LUAD 1913048 + 1913028 1913068 41 TCGCCCGACGGCGCCCTGGGCACCCGCTTCCGCATCCACGC TCGCCCTACGGCGCCCTGGGCACCCGCTTCCGCATCCACGC < 41bp 1 0.220648434598701 1 0.09965980052948 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADAT3 ENSG00000213638 CDS Human protein_coding chr19:1913048 chr19:1913034 nonsynonymous SNV 0.045 3 7 hm5C_associated_SNPs_28221 0 0 1 0 0 exosome 1 0.500231644847294 1 0.999536710305411 hm5C_site_28588 DeepMRMD:1;iRNA_m5C:0.999536710305411 28589 chr15 73468860 73468860 1 + G T LUAD 73468840 + 73468820 73468860 41 GACTGGAAAACCAACTCCAACTGTGAAGTGGGTCAAAAATG GACTGGAAAACCAACTCCAACTGTGAAGTGGGTCAAAAATT < 41bp 1 0.115731641791341 1 0.205606609582901 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NEO1 ENSG00000067141 CDS Human protein_coding chr15:73468840 chr15:73468860 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_28222 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28589 DeepMRMD:1;iRNA_m5C:0.999536712157815 28590 chr20 62521253 62521253 1 + A T LUAD 62521246 + 62521226 62521266 41 GAACGGCAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG GAACGGCAGTGACAACCTCCCTTCCTCTGCGGGGAGTGGTG < 41bp 1 0.232890386959676 1 0.042797327041626 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62521246 chr20:62521253 synonymous SNV 0.001 0 28 hm5C_associated_SNPs_28223 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28590 DeepMRMD:1;iRNA_m5C:0.999536712157815 28591 chr2 33526644 33526644 1 + T A LUAD 33526650 + 33526630 33526670 41 CAGTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGA CAGTGCAGGAACACAGAGGGCTCTTTTCAATGTGTGTGTGA < 41bp 1 0.131324227337688 1 0.0397268831729889 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526650 chr2:33526644 synonymous SNV . 0 15 hm5C_associated_SNPs_28224 0 0 1 0 2 Endoplasmic reticulum 1 0.50023160475707 1 0.99953679048586 hm5C_site_28591 DeepMRMD:1;iRNA_m5C:0.99953679048586 28592 chr2 33526644 33526644 1 + T A LUAD 33526652 + 33526632 33526672 41 GTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGACC GTGCAGGAACACAGAGGGCTCTTTTCAATGTGTGTGTGACC < 41bp 1 0.0400721717700368 1 0.0221834778785706 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526652 chr2:33526644 synonymous SNV . 0 13 hm5C_associated_SNPs_28225 0 0 1 0 2 Endoplasmic reticulum 1 0.500231651767435 1 0.99953669646513 hm5C_site_28592 DeepMRMD:1;iRNA_m5C:0.99953669646513 28593 chr5 70922501 70922501 1 + G C LUAD 70922516 + 70922496 70922536 41 AGGAGGAGCCTATGTGCCTGCCATGGCTGATGAAAACATCA AGGAGCAGCCTATGTGCCTGCCATGGCTGATGAAAACATCA < 41bp 1 0.116369224268291 1 0.216548889875412 experiment 1 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70922516 chr5:70922501 nonsynonymous SNV 0.735 5 6 hm5C_associated_SNPs_28226 0 0 0 0 2 Ribosome 1 0.500231710896605 1 0.999536578206789 hm5C_site_28593 DeepMRMD:1;iRNA_m5C:0.999536578206789 28594 chr20 39793983 39793983 1 + C G LUAD 39793996 + 39793976 39794016 41 GCATCCTCTACCTGGAGGACCCTGTGAACCACGTGAGGACT GCATCCTGTACCTGGAGGACCCTGTGAACCACGTGAGGACT < 41bp 1 0.0750093555860111 1 0.128345340490341 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39793996 chr20:39793983 synonymous SNV . 0 8 hm5C_associated_SNPs_28227 0 0 1 0 2 Cytosol 1 0.500231655289521 1 0.999536689420959 hm5C_site_28594 DeepMRMD:1;iRNA_m5C:0.999536689420959 28595 chr11 61511089 61511089 1 + G C LUAD 61511075 + 61511055 61511095 41 GCTGTCGCCAGTGGTTGCGGCGGCGGCCCGCCAGGACCCGG GCTGTCGCCAGTGGTTGCGGCGGCGGCCCGCCAGCACCCGG < 41bp 1 0.622931357152978 1 0.871140837669373 experiment 0.754137285694045 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61511075 chr11:61511089 nonsynonymous SNV 0.807 3 35 hm5C_associated_SNPs_28228 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.257718324661254 0.999536712157815 hm5C_site_28595 DeepMRMD:0.257718324661254;iRNA_m5C:0.999536712157815 28596 chr2 220349276 220349276 1 + G A LUAD 220349282 + 220349262 220349302 41 GCGCGGCCCCTTCCGTGGGGCCGAGGAGGAGGATGGCATAT GCGCGGCCCCTTCCATGGGGCCGAGGAGGAGGATGGCATAT < 41bp 1 0.212723074166274 1 0.33153909444809 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220349282 chr2:220349276 nonsynonymous SNV 0.828 1 15 hm5C_associated_SNPs_28229 0 0 0 0 0 Nucleus 1 0.500231643921034 1 0.999536712157933 hm5C_site_28596 DeepMRMD:1;iRNA_m5C:0.999536712157933 28597 chr2 220349276 220349276 1 + G A LUAD 220349283 + 220349263 220349303 41 CGCGGCCCCTTCCGTGGGGCCGAGGAGGAGGATGGCATATA CGCGGCCCCTTCCATGGGGCCGAGGAGGAGGATGGCATATA < 41bp 1 0.295510254078678 1 0.553273379802704 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220349283 chr2:220349276 nonsynonymous SNV 0.828 1 14 hm5C_associated_SNPs_28230 0 0 0 0 0 Nucleus 1 0.500231643921102 0.893453240394592 0.999536712157796 hm5C_site_28597 DeepMRMD:0.893453240394592;iRNA_m5C:0.999536712157796 28598 chr17 38320071 38320071 1 + G A LUAD 38320054 + 38320034 38320074 41 ATCTCCAGAAGCAGATGCTCCAGTGCTTGGCAGTCCTGAGA ATCTCCAGAAGCAGATGCTCCAGTGCTTGGCAGTCCTAAGA < 41bp 1 0.459782963659098 1 0.412460803985596 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320054 chr17:38320071 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_28231 0 0 1 0 0 Ribosome 1 0.500231642876458 1 0.999536714247084 hm5C_site_28598 DeepMRMD:1;iRNA_m5C:0.999536714247084 28599 chr17 38320071 38320071 1 + G A LUAD 38320059 + 38320039 38320079 41 CAGAAGCAGATGCTCCAGTGCTTGGCAGTCCTGAGAAGGAA CAGAAGCAGATGCTCCAGTGCTTGGCAGTCCTAAGAAGGAA < 41bp 1 0.38712856868194 1 0.094206690788269 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320059 chr17:38320071 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_28232 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28599 DeepMRMD:1;iRNA_m5C:0.999536712157815 28600 chr17 38320071 38320071 1 + G A LUAD 38320064 + 38320044 38320084 41 GCAGATGCTCCAGTGCTTGGCAGTCCTGAGAAGGAAGAGGC GCAGATGCTCCAGTGCTTGGCAGTCCTAAGAAGGAAGAGGC < 41bp 1 0.220215295486948 1 0.331507951021194 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320064 chr17:38320071 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_28233 0 0 1 0 0 Ribosome 1 0.500231643953636 1 0.999536712092729 hm5C_site_28600 DeepMRMD:1;iRNA_m5C:0.999536712092729 28601 chr17 38320071 38320071 1 + G A LUAD 38320069 + 38320049 38320089 41 TGCTCCAGTGCTTGGCAGTCCTGAGAAGGAAGAGGCAGCCT TGCTCCAGTGCTTGGCAGTCCTAAGAAGGAAGAGGCAGCCT < 41bp 1 0.483197702180804 1 0.254202038049698 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320069 chr17:38320071 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_28234 0 0 1 0 0 Ribosome 1 0.500231643920382 1 0.999536712159236 hm5C_site_28601 DeepMRMD:1;iRNA_m5C:0.999536712159236 28602 chr6 7579538 7579538 1 + G C LUAD 7579519 + 7579499 7579539 41 ATTCCACAGCTGAAAAATACCAAGATCGAAGTTTTGGAAGA ATTCCACAGCTGAAAAATACCAAGATCGAAGTTTTGGAACA < 41bp 1 0.699508612583298 1 0.532020032405853 experiment 0.600982774833404 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579519 chr6:7579538 nonsynonymous SNV 1.000 5 40 hm5C_associated_SNPs_28235 0 0 1 0 1 Nucleus 1 0.50023169821942 0.935959935188294 0.99953660356116 hm5C_site_28602 DeepMRMD:0.935959935188294;iRNA_m5C:0.99953660356116 28603 chr6 35715382 35715382 1 + G T LUAD 35715401 + 35715381 35715421 41 TGGCACAGAAGAATGACCTTCTCTATGACATTCTCAACTGC TTGCACAGAAGAATGACCTTCTCTATGACATTCTCAACTGC < 41bp 1 0.508400522349194 1 0.856901586055756 experiment 0.983198955301611 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715401 chr6:35715382 synonymous SNV . 0 2 hm5C_associated_SNPs_28236 0 0 0 0 2 exosome 1 0.500231643916605 0.286196827888488 0.99953671216679 hm5C_site_28603 DeepMRMD:0.286196827888488;iRNA_m5C:0.99953671216679 28604 chr3 99897182 99897182 1 + G T LUAD 99897188 + 99897168 99897208 41 AACTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAA AACTTCTGGAAATGTGAGTGCTCAGTCTGTGCAAGTCAGAA < 41bp 1 0.206263214075979 1 0.100678890943527 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897188 chr3:99897182 stopgain 0.997 1 15 hm5C_associated_SNPs_28237 0 0 1 0 1 Ribosome 1 0.500231645132674 1 0.999536709734651 hm5C_site_28604 DeepMRMD:1;iRNA_m5C:0.999536709734651 28605 chr3 99897182 99897182 1 + G T LUAD 99897190 + 99897170 99897210 41 CTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAATC CTTCTGGAAATGTGAGTGCTCAGTCTGTGCAAGTCAGAATC < 41bp 1 0.234602884200392 1 0.212208867073059 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897190 chr3:99897182 stopgain 0.997 1 13 hm5C_associated_SNPs_28238 0 0 1 0 1 Ribosome 1 0.500231645003449 1 0.999536709993102 hm5C_site_28605 DeepMRMD:1;iRNA_m5C:0.999536709993102 28606 chr2 220349275 220349275 1 + C G LUAD 220349282 + 220349262 220349302 41 GCGCGGCCCCTTCCGTGGGGCCGAGGAGGAGGATGGCATAT GCGCGGCCCCTTCGGTGGGGCCGAGGAGGAGGATGGCATAT < 41bp 1 0.245852472303984 1 0.330110043287277 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220349282 chr2:220349275 nonsynonymous SNV 0.862 0 14 hm5C_associated_SNPs_28239 0 0 0 0 0 Nucleus 1 0.500231643921096 1 0.999536712157808 hm5C_site_28606 DeepMRMD:1;iRNA_m5C:0.999536712157808 28607 chr2 220349275 220349275 1 + C G LUAD 220349283 + 220349263 220349303 41 CGCGGCCCCTTCCGTGGGGCCGAGGAGGAGGATGGCATATA CGCGGCCCCTTCGGTGGGGCCGAGGAGGAGGATGGCATATA < 41bp 1 0.403224894151657 1 0.819648146629333 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220349283 chr2:220349275 nonsynonymous SNV 0.862 0 13 hm5C_associated_SNPs_28240 0 0 0 0 0 Nucleus 1 0.500231643921073 0.360703706741334 0.999536712157854 hm5C_site_28607 DeepMRMD:0.360703706741334;iRNA_m5C:0.999536712157854 28608 chr8 99168328 99168328 1 + C T LUAD 99168348 + 99168328 99168368 41 CTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAG TTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAG < 41bp 1 0.210479933286171 1 0.39539235830307 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POP1 ENSG00000104356 CDS Human protein_coding chr8:99168348 chr8:99168328 nonsynonymous SNV 0.996 4 1 hm5C_associated_SNPs_28241 0 0 1 0 1 Mitochondrion 1 0.500231643921092 1 0.999536712157815 hm5C_site_28608 DeepMRMD:1;iRNA_m5C:0.999536712157815 28609 chr2 178378634 178378634 1 + C T LUAD 178378621 + 178378601 178378641 41 GAAGGGTGTTCAGTTTGCTCCTTTTTCTACATGCAGGTAAG GAAGGGTGTTCAGTTTGCTCCTTTTTCTACATGTAGGTAAG < 41bp 1 0.0302534778638718 1 0.102603435516357 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGPS ENSG00000018510 CDS Human protein_coding chr2:178378621 chr2:178378634 synonymous SNV . 0 34 hm5C_associated_SNPs_28242 0 0 1 0 1 Nucleus 1 0.500231643411877 1 0.999536713176246 hm5C_site_28609 DeepMRMD:1;iRNA_m5C:0.999536713176246 28610 chr12 53673605 53673605 1 + C T LUAD 53673618 + 53673598 53673638 41 CCTGCCACATCACCCAGCTCCTCCTGACCCTCGGCTGTCCC CCTGCCATATCACCCAGCTCCTCCTGACCCTCGGCTGTCCC < 41bp 1 0.287850566457156 1 0.0792027711868286 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53673618 chr12:53673605 synonymous SNV . 0 8 hm5C_associated_SNPs_28243 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28610 DeepMRMD:1;iRNA_m5C:0.999536712157815 28611 chr6 1390684 1390684 1 + C A LUAD 1390666 + 1390646 1390686 41 ACGAGTGCTTCATCAAGCTGCCTAAGGGCCTCGGGCGGCCC ACGAGTGCTTCATCAAGCTGCCTAAGGGCCTCGGGCGGACC < 41bp 1 0.10763045251563 1 0.171342194080353 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1390666 chr6:1390684 nonsynonymous SNV 0.977 5 39 hm5C_associated_SNPs_28244 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28611 DeepMRMD:1;iRNA_m5C:0.999536712157815 28612 chr22 32445957 32445957 1 + G C LUAD 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTCTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT < 41bp 1 0.24429579487854 1 0.242255538702011 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445957 nonsynonymous SNV 0.934 3 7 hm5C_associated_SNPs_28245 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28612 DeepMRMD:1;iRNA_m5C:0.999536712157815 28613 chr3 169985720 169985720 1 + G T LUAD 169985728 + 169985708 169985748 41 ATCTACCGTAGAGGTGCACGCCGCTGGAGAAAGCTTTATTG ATCTACCGTAGATGTGCACGCCGCTGGAGAAAGCTTTATTG < 41bp 1 0.400720388640066 1 0.367991238832474 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169985728 chr3:169985720 nonsynonymous SNV 0.977 5 13 hm5C_associated_SNPs_28246 0 0 1 0 1 Ribosome 1 0.500231614477665 1 0.99953677104467 hm5C_site_28613 DeepMRMD:1;iRNA_m5C:0.99953677104467 28614 chr1 228246785 228246785 1 + C A LUAD 228246782 + 228246762 228246802 41 TGGTCGCAACCCGACTTCCGCGCCATCGGTGACTTCCTCAA TGGTCGCAACCCGACTTCCGCGCAATCGGTGACTTCCTCAA < 41bp 1 0.679636073045611 1 0.602344751358032 experiment 0.640727853908779 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WNT3A ENSG00000154342 CDS Human protein_coding chr1:228246782 chr1:228246785 synonymous SNV . 0 24 hm5C_associated_SNPs_28248 0 0 0 0 1 exosome 1 0.500231643921079 0.795310497283936 0.999536712157843 hm5C_site_28614 DeepMRMD:0.795310497283936;iRNA_m5C:0.999536712157843 28615 chr1 39888078 39888078 1 + G A LUAD 39888071 + 39888051 39888091 41 TCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGC TCAGAAAGAACAAGTGGATCCTCTTCAAATGAAATTGCAGC < 41bp 1 0.0294362335129622 1 0.188499689102173 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39888071 chr1:39888078 synonymous SNV . 0 28 hm5C_associated_SNPs_28249 0 0 1 0 1 Endoplasmic reticulum 1 0.500231694069958 1 0.999536611860085 hm5C_site_28615 DeepMRMD:1;iRNA_m5C:0.999536611860085 28616 chr9 134354714 134354714 1 + G T LUAD 134354717 + 134354697 134354737 41 AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCT AGAACAACTTATGTCTGTAGCAAGGTGACGTGACCGTGCCT < 41bp 1 0.42601534658305 1 0.883167505264282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354717 chr9:134354714 stopgain 0.594 0 18 hm5C_associated_SNPs_28250 0 0 1 0 1 Nucleus 1 0.500231644145942 0.233664989471436 0.999536711708116 hm5C_site_28616 DeepMRMD:0.233664989471436;iRNA_m5C:0.999536711708116 28617 chr3 184106393 184106393 1 + C A LUAD 184106407 + 184106387 184106427 41 CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGATGGGCCC CCCACCACCAGCTGGGGGACCCCATGCAGGCTGATGGGCCC < 41bp 1 0.226098470986939 1 0.255955338478088 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184106407 chr3:184106393 nonsynonymous SNV 0.015 1 7 hm5C_associated_SNPs_28251 0 0 1 0 1 nucleus 1 0.500231643921079 1 0.999536712157842 hm5C_site_28617 DeepMRMD:1;iRNA_m5C:0.999536712157842 28618 chr12 53663153 53663153 1 + G A LUAD 53663151 + 53663131 53663171 41 TGCTCCCCAGGACTATGAGGCCGTGGCTCGGGGCAGCTTTT TGCTCCCCAGGACTATGAGGCCATGGCTCGGGGCAGCTTTT < 41bp 1 0.0982589299117661 1 0.184565782546997 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663151 chr12:53663153 nonsynonymous SNV 0.429 2 23 hm5C_associated_SNPs_28252 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28618 DeepMRMD:1;iRNA_m5C:0.999536712157815 28619 chr1 27089625 27089625 1 + G C LUAD 27089608 + 27089588 27089628 41 ACCTTATGGCACACTCCCTCCAGGGAGGATGAGTCACGCCT ACCTTATGGCACACTCCCTCCAGGGAGGATGAGTCACCCCT < 41bp 1 0.658961638981283 1 0.926283061504364 experiment 0.682076722037433 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27089608 chr1:27089625 nonsynonymous SNV 0.857 1 38 hm5C_associated_SNPs_28253 0 0 1 0 0 Nucleus 1 0.500231643981503 0.147433876991272 0.999536712036994 hm5C_site_28619 DeepMRMD:0.147433876991272;iRNA_m5C:0.999536712036994 28620 chr1 39927600 39927600 1 + T C LUAD 39927585 + 39927565 39927605 41 CACCAAGTTAGAGATGACTGCTGTGGCTGACATTTTCGACC CACCAAGTTAGAGATGACTGCTGTGGCTGACATTTCCGACC < 41bp 1 0.152861451758333 1 0.0800562798976898 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39927585 chr1:39927600 nonsynonymous SNV 0.997 4 36 hm5C_associated_SNPs_28256 0 0 1 0 0 Endoplasmic reticulum 1 0.500020080731321 1 0.999959838537358 hm5C_site_28620 DeepMRMD:1;iRNA_m5C:0.999959838537358 28621 chr16 58043944 58043944 1 + G T LUAD 58043940 + 58043920 58043960 41 TGTTCCACCTCAGCCTGTCCCAGAGTGTGGTTCTGCGCCAC TGTTCCACCTCAGCCTGTCCCAGATTGTGGTTCTGCGCCAC < 41bp 1 0.695838347074536 1 0.524546980857849 experiment 0.608323305850929 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USB1 ENSG00000103005 CDS Human protein_coding chr16:58043940 chr16:58043944 nonsynonymous SNV 0.986 2 25 hm5C_associated_SNPs_28257 0 0 1 2 0 Ribosome 1 0.500231645341804 0.950906038284302 0.999536709316393 hm5C_site_28621 DeepMRMD:0.950906038284302;iRNA_m5C:0.999536709316393 28622 chr20 279019 279019 1 + G T LUAD 279018 + 278998 279038 41 CATCCTCTTCCGGAACGAGACGGTGGACGTGGAGGACATTG CATCCTCTTCCGGAACGAGACTGTGGACGTGGAGGACATTG < 41bp 1 0.505689472184776 1 0.124995321035385 experiment 0.988621055630447 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZCCHC3 ENSG00000177764 CDS Human other chr20:279018 chr20:279019 synonymous SNV . 0 22 hm5C_associated_SNPs_28258 0 0 1 0 0 Cytosol 1 0.500232238011474 1 0.999535523977053 hm5C_site_28622 DeepMRMD:1;iRNA_m5C:0.999535523977053 28623 chr14 56763464 56763464 1 + G A LUAD 56763475 + 56763455 56763495 41 CGCCGCCCGGCCTCAGTGTCCTGTGGGGCTCAACACCCTGG CGCCGCCCGACCTCAGTGTCCTGTGGGGCTCAACACCCTGG < 41bp 1 0.465436150992407 1 0.12543261051178 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PELI2 ENSG00000139946 CDS Human protein_coding chr14:56763475 chr14:56763464 synonymous SNV . 0 10 hm5C_associated_SNPs_28259 0 0 0 0 0 nucleus 1 0.500231643921327 1 0.999536712157347 hm5C_site_28623 DeepMRMD:1;iRNA_m5C:0.999536712157347 28624 chr12 110032875 110032875 1 + G T LUAD 110032880 + 110032860 110032900 41 CTGAATGCCCTCGGCGTGGGCCACGCCTCTCTGGACCAGCT CTGAATGCCCTCGGCTTGGGCCACGCCTCTCTGGACCAGCT < 41bp 1 0.181759588585899 1 0.105199068784714 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVK ENSG00000110921 CDS Human protein_coding chr12:110032880 chr12:110032875 nonsynonymous SNV 0.917 5 16 hm5C_associated_SNPs_28260 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28624 DeepMRMD:1;iRNA_m5C:0.999536712157815 28625 chr10 75526854 75526854 1 + C G LUAD 75526835 + 75526815 75526855 41 GCTGAGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCCT GCTGAGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCGT < 41bp 1 0.118603492456802 1 0.069804459810257 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526835 chr10:75526854 nonsynonymous SNV 0.995 4 40 hm5C_associated_SNPs_28262 0 0 1 0 2 Nucleus 1 0.500231643923932 1 0.999536712152136 hm5C_site_28625 DeepMRMD:1;iRNA_m5C:0.999536712152136 28626 chr10 75526854 75526854 1 + C G LUAD 75526839 + 75526819 75526859 41 AGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCCTGCCC AGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCGTGCCC < 41bp 1 0.306353422549507 1 0.418636053800583 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526839 chr10:75526854 nonsynonymous SNV 0.995 4 36 hm5C_associated_SNPs_28263 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28626 DeepMRMD:1;iRNA_m5C:0.999536712157815 28627 chr21 30701833 30701833 1 + G A LUAD 30701844 + 30701824 30701864 41 ATGCACAACGGATAATTTCACTGTCTCGAAATGATTTTCAG ATGCACAACAGATAATTTCACTGTCTCGAAATGATTTTCAG < 41bp 1 0.146801378235727 1 0.127779573202133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BACH1 ENSG00000156273 CDS Human protein_coding chr21:30701844 chr21:30701833 nonsynonymous SNV 0.998 1 10 hm5C_associated_SNPs_28264 0 0 1 0 1 Cytosol 1 0.500231661178242 1 0.999536677643516 hm5C_site_28627 DeepMRMD:1;iRNA_m5C:0.999536677643516 28628 chr19 50905061 50905061 1 + C G LUAD 50905041 + 50905021 50905061 41 CTGTGACCCCACAGGCCCAGCGCAGCCTGTGCCTGGGGGGC CTGTGACCCCACAGGCCCAGCGCAGCCTGTGCCTGGGGGGG < 41bp 1 0.411253497335302 1 0.226867944002151 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905041 chr19:50905061 nonsynonymous SNV 0.005 0 41 hm5C_associated_SNPs_28265 0 0 1 0 1 Nucleus 1 0.500231643923023 1 0.999536712153953 hm5C_site_28628 DeepMRMD:1;iRNA_m5C:0.999536712153953 28629 chr3 62189588 62189588 1 + T C LUAD 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCGCGGGGACCGACTTTCTGAAGACAGCAGA < 41bp 1 0.206628968477137 1 0.127856582403183 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189588 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_28266 0 0 0 0 1 Ribosome 1 0.500231643915423 1 0.999536712169154 hm5C_site_28629 DeepMRMD:1;iRNA_m5C:0.999536712169154 28630 chr9 96026304 96026304 1 + G A LUAD 96026292 + 96026272 96026312 41 TCGACTTGGACGGGGACGCACCCGATGAAATTGCCACGTAT TCGACTTGGACGGGGACGCACCCGATGAAATTACCACGTAT < 41bp 1 0.463597956573964 1 0.39787894487381 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96026292 chr9:96026304 nonsynonymous SNV 0.081 4 33 hm5C_associated_SNPs_28267 0 0 1 0 1 Nucleus 1 0.50023164391869 1 0.99953671216262 hm5C_site_28630 DeepMRMD:1;iRNA_m5C:0.99953671216262 28631 chr1 218458671 218458671 1 + G T LUAD 218458666 + 218458646 218458686 41 CCGGCGCAGAAAAATGGCAGCCGCCGCTCCGGACTCACGTG CCGGCGCAGAAAAATGGCAGCCGCCTCTCCGGACTCACGTG < 41bp 1 0.273415578123921 1 0.239698886871338 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RRP15 ENSG00000067533 CDS Human protein_coding chr1:218458666 chr1:218458671 nonsynonymous SNV 0.008 1 26 hm5C_associated_SNPs_28268 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28631 DeepMRMD:1;iRNA_m5C:0.999536712157815 28632 chr8 2092607 2092607 1 + C T LUAD 2092590 + 2092570 2092610 41 AACCTCTTCCGTCCAAAGACCTTGAATCTGACCTGCACGGT AACCTCTTCCGTCCAAAGACCTTGAATCTGACCTGCATGGT < 41bp 1 0.269236324021378 1 0.241920739412308 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2092590 chr8:2092607 nonsynonymous SNV 0.973 3 38 hm5C_associated_SNPs_28269 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28632 DeepMRMD:1;iRNA_m5C:0.999536712157815 28633 chr17 4621236 4621236 1 + G A LUAD 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCCGGAGAAACCCGACCCCCAGCCTTCAGCCG < 41bp 1 0.324223571793496 1 0.182995229959488 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621236 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_28270 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28633 DeepMRMD:1;iRNA_m5C:0.999536712157815 28634 chr2 86705316 86705316 1 + T C LUAD 86705303 + 86705283 86705323 41 TTATTTGCAGGTGCTGCTTACAAGACTTTCTCTTGGCTAAA TTATTTGCAGGTGCTGCTTACAAGACTTTCTCTCGGCTAAA < 41bp 1 0.587086635341984 1 0.363666981458664 experiment 0.825826729316032 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM3A ENSG00000115548 CDS Human protein_coding chr2:86705303 chr2:86705316 nonsynonymous SNV 0.958 4 34 hm5C_associated_SNPs_28271 0 0 1 0 2 chromatin 1 0.500231643830793 1 0.999536712338414 hm5C_site_28634 DeepMRMD:1;iRNA_m5C:0.999536712338414 28635 chr7 135291548 135291548 1 + C G LUAD 135291549 + 135291529 135291569 41 TTCGTCATGAAACAAGAATCCACATCTTGAATCTTCTCATT TTCGTCATGAAACAAGAATGCACATCTTGAATCTTCTCATT < 41bp 1 0.200635493628882 1 0.0451912581920624 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291549 chr7:135291548 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_28272 0 0 1 0 1 Cytosol 1 0.500231763780984 1 0.999536472438031 hm5C_site_28635 DeepMRMD:1;iRNA_m5C:0.999536472438031 28636 chr16 29994920 29994920 1 + T C LUAD 29994940 + 29994920 29994960 41 TCCGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT CCCGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT < 41bp 1 0.591002445458329 1 0.0880445539951324 experiment 0.817995109083342 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994940 chr16:29994920 nonsynonymous SNV 0.456 1 1 hm5C_associated_SNPs_28273 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_28636 DeepMRMD:1;iRNA_m5C:0.999536712157815 28637 chr14 76638254 76638254 1 + C T LUAD 76638267 + 76638247 76638287 41 TAATCTTCTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAG TAATCTTTTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAG < 41bp 1 0.308944511158919 1 0.102438360452652 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76638267 chr14:76638254 synonymous SNV . 0 8 hm5C_associated_SNPs_28274 0 0 1 0 1 Nucleus 1 0.5002316439208 1 0.9995367121584 hm5C_site_28637 DeepMRMD:1;iRNA_m5C:0.9995367121584 28638 chr11 57428873 57428873 1 + C T LUAD 57428893 + 57428873 57428913 41 CTCATCATGGATATCCGGTTCATGGATCTGAAGTAGAGATC TTCATCATGGATATCCGGTTCATGGATCTGAAGTAGAGATC < 41bp 1 0.48566182827477 1 0.0798802077770233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLP1 ENSG00000172409 CDS Human protein_coding chr11:57428893 chr11:57428873 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_28275 0 0 1 0 0 Cytosol 1 0.500231643921056 1 0.999536712157888 hm5C_site_28638 DeepMRMD:1;iRNA_m5C:0.999536712157888 28639 chr2 46808133 46808133 1 + G T LUAD 46808147 + 46808127 46808167 41 TTTGATGAGGCTATCATAGCCATTTTAACTCCAAAGAAACA TTTGATTAGGCTATCATAGCCATTTTAACTCCAAAGAAACA < 41bp 1 0.0524082992696185 1 0.0465508103370667 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RHOQ ENSG00000119729 CDS Human protein_coding chr2:46808147 chr2:46808133 stopgain 1.000 1 7 hm5C_associated_SNPs_28276 0 0 0 0 1 nucleoplasm 1 0.500224040152611 1 0.999551919694778 hm5C_site_28639 DeepMRMD:1;iRNA_m5C:0.999551919694778 28640 chr3 128973901 128973901 1 + C T LUAD 128973917 + 128973897 128973937 41 AGCTCTGCCCTCGTGTCTTCCTTGGTGTGTAGTTGCTGCTG AGCTTTGCCCTCGTGTCTTCCTTGGTGTGTAGTTGCTGCTG < 41bp 1 0.680499131686675 1 0.721078395843506 experiment 0.63900173662665 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973917 chr3:128973901 nonsynonymous SNV 0.981 4 5 hm5C_associated_SNPs_28277 0 0 1 0 2 Nucleus 1 0.500231636896781 0.557843208312988 0.999536726206438 hm5C_site_28640 DeepMRMD:0.557843208312988;iRNA_m5C:0.999536726206438 28641 chr19 41778021 41778021 1 + C T LUAD 41778031 + 41778011 41778051 41 GAGCACCCACCAGCTTCCTCCCGCCTGAAGCTTCTCAACTC GAGCACCCACTAGCTTCCTCCCGCCTGAAGCTTCTCAACTC < 41bp 1 0.176440518281038 1 0.177653551101685 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41778031 chr19:41778021 synonymous SNV . 0 11 hm5C_associated_SNPs_28278 0 0 1 0 0 Cytosol 1 0.500231643921467 1 0.999536712157066 hm5C_site_28641 DeepMRMD:1;iRNA_m5C:0.999536712157066 28642 chr12 104056698 104056698 1 + G A LUAD 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCCAAAAATGGCCGAATTTACACACTAACAGG < 41bp 1 0.183100024314583 1 0.299348950386047 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056698 synonymous SNV . 0 36 hm5C_associated_SNPs_28279 0 0 0 0 2 nucleoplasm 1 0.500231643922174 1 0.999536712155653 hm5C_site_28642 DeepMRMD:1;iRNA_m5C:0.999536712155653 28643 chr5 149758943 149758943 1 + G T LUAD 149758923 + 149758903 149758943 41 CCAGAGGAGGACTCAGGGAGCAGTGAGGAGGAGTCAGACAG CCAGAGGAGGACTCAGGGAGCAGTGAGGAGGAGTCAGACAT < 41bp 1 0.288371297607596 1 0.455209851264954 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149758923 chr5:149758943 nonsynonymous SNV 0.905 1 41 hm5C_associated_SNPs_28280 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28643 DeepMRMD:1;iRNA_m5C:0.999536712157815 28644 chr9 97823056 97823056 1 + C A LUAD 97823068 + 97823048 97823088 41 CAAAGCCTCCAGAGGACATACCACCTCCAGGATCAGGATGC CAAAGCCTACAGAGGACATACCACCTCCAGGATCAGGATGC < 41bp 1 0.0611932220857956 1 0.0364265739917755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97823068 chr9:97823056 synonymous SNV . 0 9 hm5C_associated_SNPs_28281 0 0 1 0 2 Cytosol 1 0.500231643848241 1 0.999536712303517 hm5C_site_28644 DeepMRMD:1;iRNA_m5C:0.999536712303517 28645 chr8 145065687 145065687 1 + A T LUAD 145065698 + 145065678 145065718 41 AAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTC AAGGGGGCTTCCCCCAGGGGCCATATCCCCAGAGCCCCTTC < 41bp 1 0.217840719579241 1 0.058133989572525 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065698 chr8:145065687 nonsynonymous SNV 0.746 0 10 hm5C_associated_SNPs_28283 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_28645 DeepMRMD:1;iRNA_m5C:0.999536712157815 28646 chr8 145065687 145065687 1 + A T LUAD 145065699 + 145065679 145065719 41 AGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCC AGGGGGCTTCCCCCAGGGGCCATATCCCCAGAGCCCCTTCC < 41bp 1 0.179633150129164 1 0.106619387865067 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065699 chr8:145065687 nonsynonymous SNV 0.746 0 9 hm5C_associated_SNPs_28284 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_28646 DeepMRMD:1;iRNA_m5C:0.999536712157815 28647 chr7 65610483 65610483 1 + A T LUAD 65610481 + 65610461 65610501 41 CCTGTGACTGCTGTGGAGATCCAGCTGGTGAGTGAAGGGCG CCTGTGACTGCTGTGGAGATCCTGCTGGTGAGTGAAGGGCG < 41bp 1 0.379314078455808 1 0.172158807516098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CRCP ENSG00000241258;ENSG00000249319 CDS Human other chr7:65610481 chr7:65610483 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_28285 0 0 1 0 2 Ribosome 1 0.500231635192131 1 0.999536729615738 hm5C_site_28647 DeepMRMD:1;iRNA_m5C:0.999536729615738 28648 chr6 27101068 27101068 1 + A G LUAD 27101054 + 27101034 27101074 41 GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACAA GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGGCAACAA < 41bp 1 0.586676579456271 1 0.574169337749481 experiment 0.826646841087458 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101054 chr6:27101068 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_28286 0 0 1 0 0 Ribosome 1 0.500231643921102 0.851661324501038 0.999536712157795 hm5C_site_28648 DeepMRMD:0.851661324501038;iRNA_m5C:0.999536712157795 28649 chr6 27101068 27101068 1 + A G LUAD 27101062 + 27101042 27101082 41 GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC GGAACTGGCGGGCAACGCGGCCCGCGGCAACAAGAAGACCC < 41bp 1 0.345106203519486 1 0.274779289960861 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101062 chr6:27101068 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_28287 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28649 DeepMRMD:1;iRNA_m5C:0.999536712157815 28650 chr6 27101068 27101068 1 + A G LUAD 27101063 + 27101043 27101083 41 GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG GAACTGGCGGGCAACGCGGCCCGCGGCAACAAGAAGACCCG < 41bp 1 0.495909230956545 1 0.320564687252045 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101063 chr6:27101068 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_28288 0 0 1 0 0 Ribosome 1 0.500231643919391 1 0.999536712161218 hm5C_site_28650 DeepMRMD:1;iRNA_m5C:0.999536712161218 28651 chr12 8196336 8196336 1 + C T LUAD 8196351 + 8196331 8196371 41 TTTCCCGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT TTTCCTGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT < 41bp 1 0.0199966193788424 1 0.0886635184288025 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196351 chr12:8196336 stopgain 1.000 0 6 hm5C_associated_SNPs_28289 0 0 1 0 1 nucleoplasm 1 0.500231641502344 1 0.999536716995313 hm5C_site_28651 DeepMRMD:1;iRNA_m5C:0.999536716995313 28652 chr12 58109617 58109617 1 + T A LUAD 58109602 + 58109582 58109622 41 ATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT ATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTAAGTGCT < 41bp 1 0.399978160173652 1 0.067376434803009 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OS9 ENSG00000135506 CDS Human protein_coding chr12:58109602 chr12:58109617 stopgain 0.959 1 36 hm5C_associated_SNPs_28290 0 0 1 0 1 Nucleus 1 0.500231646958719 1 0.999536706082561 hm5C_site_28652 DeepMRMD:1;iRNA_m5C:0.999536706082561 28653 chr1 155030164 155030164 1 + G T LUAD 155030158 + 155030138 155030178 41 CTTTGACCTGCCAGCTGAGGCCAGGTGCACAGTGTGCATCT CTTTGACCTGCCAGCTGAGGCCAGGTTCACAGTGTGCATCT < 41bp 1 0.653876227764175 1 0.518568575382233 experiment 0.692247544471651 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155030158 chr1:155030164 nonsynonymous SNV 0.935 3 27 hm5C_associated_SNPs_28291 0 0 1 0 2 Ribosome 1 0.500231643921077 0.962862849235534 0.999536712157846 hm5C_site_28653 DeepMRMD:0.962862849235534;iRNA_m5C:0.999536712157846 28654 chr17 78078651 78078651 1 + G C LUAD 78078646 + 78078626 78078666 41 CAGTGCGACGTCCCCCCCAACAGCCGCTTCGATTGCGCCCC CAGTGCGACGTCCCCCCCAACAGCCCCTTCGATTGCGCCCC < 41bp 1 0.256912751585664 1 0.677716493606567 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78078646 chr17:78078651 nonsynonymous SNV 0.536 4 26 hm5C_associated_SNPs_28292 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921286 0.644567012786866 0.999536712157427 hm5C_site_28654 DeepMRMD:0.644567012786866;iRNA_m5C:0.999536712157427 28655 chr1 9415995 9415995 1 + G T LUAD 9415999 + 9415979 9416019 41 AGACTGTGGACATGAGGGACCCCACGTACAGGCCCCTGAAG AGACTGTGGACATGAGTGACCCCACGTACAGGCCCCTGAAG < 41bp 1 0.162126797378774 1 0.185582995414734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPSB1 ENSG00000171621 CDS Human protein_coding chr1:9415999 chr1:9415995 nonsynonymous SNV 0.998 1 17 hm5C_associated_SNPs_28293 0 0 0 0 0 nucleus 1 0.500231478422496 1 0.999537043155008 hm5C_site_28655 DeepMRMD:1;iRNA_m5C:0.999537043155008 28656 chr1 7796531 7796531 1 + G C LUAD 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCCGCGCAATGACCCTACTCCACCTGGCCGCTGCCCAGGG < 41bp 1 0.24502063818699 1 0.199866950511932 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796531 nonsynonymous SNV 0.925 4 8 hm5C_associated_SNPs_28294 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28656 DeepMRMD:1;iRNA_m5C:0.999536712157815 28657 chr3 73113183 73113183 1 + G T LUAD 73113185 + 73113165 73113205 41 ATGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTT ATGGGCCTGGGACACCCATGCCACTTAATCGACCAAAGGTT < 41bp 1 0.167232211452807 1 0.109184920787811 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113185 chr3:73113183 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_28295 0 0 1 0 1 Ribosome 1 0.500230325869494 1 0.999539348261013 hm5C_site_28657 DeepMRMD:1;iRNA_m5C:0.999539348261013 28658 chr3 73113183 73113183 1 + G T LUAD 73113186 + 73113166 73113206 41 TGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTTT TGGGCCTGGGACACCCATGCCACTTAATCGACCAAAGGTTT < 41bp 1 0.198451100200936 1 0.0275746285915375 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113186 chr3:73113183 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_28296 0 0 1 0 1 Ribosome 1 0.500231643922199 1 0.999536712155602 hm5C_site_28658 DeepMRMD:1;iRNA_m5C:0.999536712155602 28659 chr7 77398052 77398052 1 + G T LUAD 77398071 + 77398051 77398091 41 TGTGGGTTCGTCCAGGAGAACAAATGATCCCTGTGGCTGAT TTTGGGTTCGTCCAGGAGAACAAATGATCCCTGTGGCTGAT < 41bp 1 0.464481415391873 1 0.226339727640152 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSBN1L ENSG00000187257 CDS Human protein_coding chr7:77398071 chr7:77398052 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_28297 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28659 DeepMRMD:1;iRNA_m5C:0.999536712157815 28660 chr12 27788039 27788039 1 + G C LUAD 27788020 + 27788000 27788040 41 CCCAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCAGA CCCAGATTCAACAGCAGAAACGCTTGTTGAATGGCTTCACA < 41bp 1 0.335757815552077 1 0.122868835926056 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27788020 chr12:27788039 nonsynonymous SNV 0.996 1 40 hm5C_associated_SNPs_28298 0 0 1 0 1 Nucleus 1 0.500231643596156 1 0.999536712807688 hm5C_site_28660 DeepMRMD:1;iRNA_m5C:0.999536712807688 28661 chr2 69379389 69379389 1 + G T LUAD 69379375 + 69379355 69379395 41 CTGGCTCTCCTCTGGTGGTTCTGGCCCCTCTGCTGCACTGT CTGGCTCTCCTCTGGTGGTTCTGGCCCCTCTGCTTCACTGT < 41bp 1 0.444622231719222 1 0.69121116399765 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69379375 chr2:69379389 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_28299 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.6175776720047 0.999536712157815 hm5C_site_28661 DeepMRMD:0.6175776720047;iRNA_m5C:0.999536712157815 28662 chr16 55523626 55523626 1 + G C LUAD 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGCCAAC < 41bp 1 0.0395267515758999 1 0.265167653560638 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523626 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_28300 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_28662 DeepMRMD:1;iRNA_m5C:0.999536712157815 28663 chr16 55523613 55523613 1 + T G LUAD 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC AAGGTGCCCCCTGTGTCTTCCCCGTCACTTTCCTGGGCAAC < 41bp 1 0.171694789715631 1 0.194870859384537 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523613 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_28301 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921096 1 0.999536712157808 hm5C_site_28663 DeepMRMD:1;iRNA_m5C:0.999536712157808 28664 chr2 24888641 24888641 1 + A G LUAD 24888633 + 24888613 24888653 41 AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA AACAGCACGGAAAAGAGGCGCAGGGAGCGAGAAAATAAATA < 41bp 1 0.326713472526236 1 0.638537108898163 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24888633 chr2:24888641 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_28302 0 0 1 0 1 Cytosol 1 0.500231643921089 0.722925782203674 0.999536712157821 hm5C_site_28664 DeepMRMD:0.722925782203674;iRNA_m5C:0.999536712157821 28665 chr11 308242 308242 1 + C T LUAD 308239 + 308219 308259 41 TCCTGTCAACAGCGGCCAGCCTCCCAACTACGAGATGCTCA TCCTGTCAACAGCGGCCAGCCTCTCAACTACGAGATGCTCA < 41bp 1 0.183959200453076 1 0.133988708257675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IFITM2 ENSG00000185201 CDS Human protein_coding chr11:308239 chr11:308242 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_28303 0 0 1 0 0 Endoplasmic reticulum 1 0.500141983244934 1 0.999716033510133 hm5C_site_28665 DeepMRMD:1;iRNA_m5C:0.999716033510133 28666 chr1 200818117 200818117 1 + G T LUAD 200818115 + 200818095 200818135 41 AAACAGGGCTTCCACAGGGACGGGACACTACCCAGCTGTTG AAACAGGGCTTCCACAGGGACGTGACACTACCCAGCTGTTG < 41bp 1 0.56842586647666 1 0.215630799531937 experiment 0.863148267046679 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200818115 chr1:200818117 synonymous SNV . 0 23 hm5C_associated_SNPs_28304 0 0 1 0 0 chromatin 1 0.500231644359354 1 0.999536711281293 hm5C_site_28666 DeepMRMD:1;iRNA_m5C:0.999536711281293 28667 chrX 49689821 49689821 1 + G A LUAD 49689825 + 49689805 49689845 41 AAAACAGGGCCACATAGCTGCCTTTCTATCAAGTCTCCCTA AAAACAGGGCCACATAACTGCCTTTCTATCAAGTCTCCCTA < 41bp 1 0.0990488133409374 1 0.0180214643478394 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN5 ENSG00000171365 UTR5 Human protein_coding chrX:49689825 chrX:49689821 . . 0 17 hm5C_associated_SNPs_28305 0 0 0 0 1 Nucleus 1 0.500231643918375 1 0.999536712163249 hm5C_site_28667 DeepMRMD:1;iRNA_m5C:0.999536712163249 28668 chr12 22811992 22811992 1 + A T LUAD 22811993 + 22811973 22812013 41 ATCCATGCTATTCATGCACACAATGGCTGGATCCCCAAATC ATCCATGCTATTCATGCACTCAATGGCTGGATCCCCAAATC < 41bp 1 0.487830885388965 1 0.56351363658905 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22811993 chr12:22811992 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_28306 0 0 1 0 2 Ribosome 1 0.500231679894293 0.8729727268219 0.999536640211414 hm5C_site_28668 DeepMRMD:0.8729727268219;iRNA_m5C:0.999536640211414 28669 chr16 89261522 89261522 1 + C G LUAD 89261534 + 89261514 89261554 41 GTCTTTCTCCTGGGGCACTGCTACCCAGACACAGAGGCCGG GTCTTTCTGCTGGGGCACTGCTACCCAGACACAGAGGCCGG < 41bp 1 0.34843436693181 1 0.165099203586578 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDH15 ENSG00000129910 CDS Human protein_coding chr16:89261534 chr16:89261522 nonsynonymous SNV 0.007 1 9 hm5C_associated_SNPs_28307 0 0 0 0 0 nucleus 1 0.500231643922196 1 0.999536712155608 hm5C_site_28669 DeepMRMD:1;iRNA_m5C:0.999536712155608 28670 chr5 140516563 140516563 1 + G T LUAD 140516546 + 140516526 140516566 41 TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTC TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCATGTC < 41bp 1 0.118034115378848 1 0.0618626773357391 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140516546 chr5:140516563 nonsynonymous SNV 0.314 3 38 hm5C_associated_SNPs_28308 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921273 1 0.999536712157455 hm5C_site_28670 DeepMRMD:1;iRNA_m5C:0.999536712157455 28671 chr19 7620629 7620629 1 + C T LUAD 7620645 + 7620625 7620665 41 GCAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA GCAGTGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA < 41bp 1 0.255361449321523 1 0.466932684183121 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620645 chr19:7620629 nonsynonymous SNV 0.998 3 5 hm5C_associated_SNPs_28310 0 0 1 0 1 Ribosome 1 0.500231650001892 1 0.999536699996216 hm5C_site_28671 DeepMRMD:1;iRNA_m5C:0.999536699996216 28672 chr19 7620629 7620629 1 + C T LUAD 7620646 + 7620626 7620666 41 CAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG CAGTGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG < 41bp 1 0.477437511039022 1 0.698079288005829 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620646 chr19:7620629 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_28311 0 0 1 0 1 Ribosome 1 0.500231643921092 0.603841423988342 0.999536712157815 hm5C_site_28672 DeepMRMD:0.603841423988342;iRNA_m5C:0.999536712157815 28673 chr9 125154739 125154739 1 + G T LUAD 125154756 + 125154736 125154776 41 CAAGACCTGTCCCTACGTTTCCTTCCGTGTGCCGGATGCCA CAATACCTGTCCCTACGTTTCCTTCCGTGTGCCGGATGCCA < 41bp 1 0.0172113841552791 1 0.0365857481956482 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125154756 chr9:125154739 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_28312 0 0 1 0 0 nucleolus 1 0.500231868698884 1 0.999536262602231 hm5C_site_28673 DeepMRMD:1;iRNA_m5C:0.999536262602231 28674 chr2 98263849 98263849 1 + A G LUAD 98263858 + 98263838 98263878 41 CTTCAGGCACCAGGGAAGACCCTAATTTAGTCCCCTCCATC CTTCAGGCACCGGGGAAGACCCTAATTTAGTCCCCTCCATC < 41bp 1 0.373566971168795 1 0.0602681934833527 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263858 chr2:98263849 nonsynonymous SNV 0.996 2 12 hm5C_associated_SNPs_28313 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28674 DeepMRMD:1;iRNA_m5C:0.999536712157815 28675 chr11 75115797 75115797 1 + A G LUAD 75115815 + 75115795 75115835 41 CCACGTGAGCATTGTGGAACCCAAAGATGAGATACTGCCCA CCGCGTGAGCATTGTGGAACCCAAAGATGAGATACTGCCCA < 41bp 1 0.660376493637025 1 0.40977081656456 experiment 0.679247012725949 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 CDS Human protein_coding chr11:75115815 chr11:75115797 nonsynonymous SNV 0.881 0 3 hm5C_associated_SNPs_28314 0 0 1 0 1 Cytosol 1 0.500231642137608 1 0.999536715724785 hm5C_site_28675 DeepMRMD:1;iRNA_m5C:0.999536715724785 28676 chrX 56591627 56591627 1 + G T LUAD 56591612 + 56591592 56591632 41 AGCTCCCAGCCTTCCTGCAGCAGATGCAGAATCCAGACACA AGCTCCCAGCCTTCCTGCAGCAGATGCAGAATCCATACACA < 41bp 1 0.36387854049715 1 0.483771860599518 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56591612 chrX:56591627 nonsynonymous SNV 0.977 4 36 hm5C_associated_SNPs_28315 0 0 1 0 0 nucleus 1 0.500231649378994 1 0.999536701242012 hm5C_site_28676 DeepMRMD:1;iRNA_m5C:0.999536701242012 28677 chr5 145843189 145843189 1 + C T LUAD 145843198 + 145843178 145843218 41 TTCAACTCCTGCTCCTACAGCCACACCTGTGCAAACCGTTC TTCAACTCCTGTTCCTACAGCCACACCTGTGCAAACCGTTC < 41bp 1 0.238172309680236 1 0.212365746498108 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145843198 chr5:145843189 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_28316 0 0 1 0 1 Nucleus 1 0.499949301169263 1 1 hm5C_site_28677 DeepMRMD:1;iRNA_m5C:1 28678 chr5 145843190 145843190 1 + T G LUAD 145843198 + 145843178 145843218 41 TTCAACTCCTGCTCCTACAGCCACACCTGTGCAAACCGTTC TTCAACTCCTGCGCCTACAGCCACACCTGTGCAAACCGTTC < 41bp 1 0.326662133112386 1 0.104477286338806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145843198 chr5:145843190 synonymous SNV . 0 13 hm5C_associated_SNPs_28317 0 0 1 0 1 Nucleus 1 0.500231113427602 1 0.999537773144796 hm5C_site_28678 DeepMRMD:1;iRNA_m5C:0.999537773144796 28679 chr5 145843192 145843192 1 + C T LUAD 145843198 + 145843178 145843218 41 TTCAACTCCTGCTCCTACAGCCACACCTGTGCAAACCGTTC TTCAACTCCTGCTCTTACAGCCACACCTGTGCAAACCGTTC < 41bp 1 0.273269627167316 1 0.196782171726227 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145843198 chr5:145843192 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_28318 0 0 1 0 1 Nucleus 1 0.496736881296088 1 1 hm5C_site_28679 DeepMRMD:1;iRNA_m5C:1 28680 chr17 21731297 21731297 1 + G A LUAD 21731317 + 21731297 21731337 41 GCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAACATCC ACAGCTGGAAGATGGCGGTACTCTTTCTGACTACAACATCC < 41bp 1 0.140144585761117 1 0.135018914937973 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731317 chr17:21731297 nonsynonymous SNV 0.990 0 1 hm5C_associated_SNPs_28319 0 0 1 0 0 Ribosome 1 0.500231643761227 1 0.999536712477546 hm5C_site_28680 DeepMRMD:1;iRNA_m5C:0.999536712477546 28681 chr19 48982391 48982391 1 + G T LUAD 48982399 + 48982379 48982419 41 GGGCGGCTGTGAGTGTGGACCCCTTCTATGAGATGCTGGCA GGGCGGCTGTGATTGTGGACCCCTTCTATGAGATGCTGGCA < 41bp 1 0.0411827674464699 1 0.163322865962982 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYTH2 ENSG00000105443 CDS Human protein_coding chr19:48982399 chr19:48982391 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_28320 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28681 DeepMRMD:1;iRNA_m5C:0.999536712157815 28682 chr14 68042641 68042641 1 + G A LUAD 68042632 + 68042612 68042652 41 GACTATGAGGCTGGAGGAACCAGACGGTTGCTTTCCTCCCA GACTATGAGGCTGGAGGAACCAGACGGTTACTTTCCTCCCA < 41bp 1 0.623821257232142 1 0.784024178981781 experiment 0.752357485535716 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042632 chr14:68042641 synonymous SNV . 0 30 hm5C_associated_SNPs_28321 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920113 0.431951642036438 0.999536712159773 hm5C_site_28682 DeepMRMD:0.431951642036438;iRNA_m5C:0.999536712159773 28683 chrX 73045838 73045838 1 + C G LUAD 73045845 - 73045825 73045865 41 GACAGCCTGAACTCCCTGCTCATAGTAGTGGCCAAATAATT GACAGCCTGAACTCCCTGCTCATAGTACTGGCCAAATAATT < 41bp 1 0.0963562805023935 1 0.10574334859848 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045845 chrX:73045838 . . 0 28 hm5C_associated_SNPs_28322 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28683 DeepMRMD:1;iRNA_m5C:0.999536712157815 28684 chrX 73045838 73045838 1 + C G LUAD 73045854 - 73045834 73045874 41 TCCCAAGGGGACAGCCTGAACTCCCTGCTCATAGTAGTGGC TCCCAAGGGGACAGCCTGAACTCCCTGCTCATAGTACTGGC < 41bp 1 0.318722200075285 1 0.391038596630096 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045854 chrX:73045838 . . 0 37 hm5C_associated_SNPs_28323 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28684 DeepMRMD:1;iRNA_m5C:0.999536712157815 28685 chr13 21205212 21205212 1 + G T LUAD 21205223 + 21205203 21205243 41 AGTGCAGCTGCAACCAATCTCTCAGCCCTGTATTATATGGT AGTGCAGCTTCAACCAATCTCTCAGCCCTGTATTATATGGT < 41bp 1 0.301966186391308 1 0.278211504220963 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFT88 ENSG00000032742 CDS Human protein_coding chr13:21205223 chr13:21205212 nonsynonymous SNV 0.983 2 10 hm5C_associated_SNPs_28325 0 0 0 0 2 Cytosol 1 0.500231485874168 1 0.999537028251663 hm5C_site_28685 DeepMRMD:1;iRNA_m5C:0.999537028251663 28686 chr7 128494178 128494178 1 + A T LUAD 128494192 + 128494172 128494212 41 CCACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGG CCACCCTGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGG < 41bp 1 0.0352749767950456 1 0.0915061235427856 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128494192 chr7:128494178 nonsynonymous SNV 0.999 5 7 hm5C_associated_SNPs_28326 0 0 0 0 0 chromatin 1 0.500231643920849 1 0.999536712158302 hm5C_site_28686 DeepMRMD:1;iRNA_m5C:0.999536712158302 28687 chr7 128494178 128494178 1 + A T LUAD 128494193 + 128494173 128494213 41 CACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGGG CACCCTGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGGG < 41bp 1 0.0143249665627386 1 0.247281759977341 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128494193 chr7:128494178 nonsynonymous SNV 0.999 5 6 hm5C_associated_SNPs_28327 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_28687 DeepMRMD:1;iRNA_m5C:0.999536712157815 28688 chr22 41913580 41913580 1 + C T LUAD 41913571 + 41913551 41913591 41 ATGGGTGCAGAAATTGGGGCCACCACTTCCGTGTTCCCTTA ATGGGTGCAGAAATTGGGGCCACCACTTCTGTGTTCCCTTA < 41bp 1 0.57625755383501 1 0.330467462539673 experiment 0.84748489232998 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41913571 chr22:41913580 synonymous SNV . 0 30 hm5C_associated_SNPs_28328 0 0 1 0 2 chromatin 1 0.500231643919941 1 0.999536712160119 hm5C_site_28688 DeepMRMD:1;iRNA_m5C:0.999536712160119 28689 chr5 14291337 14291337 1 + G T LUAD 14291323 + 14291303 14291343 41 TCCAGCTGAGGCTGTTTGAACAGGATGCTGAGAAGGTAAAG TCCAGCTGAGGCTGTTTGAACAGGATGCTGAGAATGTAAAG < 41bp 1 0.550656694316824 1 0.449169427156448 experiment 0.898686611366353 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14291323 chr5:14291337 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_28329 0 0 1 0 1 Nucleus 1 0.500231643920519 1 0.999536712158963 hm5C_site_28689 DeepMRMD:1;iRNA_m5C:0.999536712158963 28690 chr17 45376752 45376752 1 + C G LUAD 45376744 + 45376724 45376764 41 GGCTACTACTGCAACTGTACCACGCGTACTGACACCTGCAT GGCTACTACTGCAACTGTACCACGCGTAGTGACACCTGCAT < 41bp 1 0.585493243958181 1 0.131999880075455 experiment 0.829013512083638 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376744 chr17:45376752 nonsynonymous SNV 0.531 3 29 hm5C_associated_SNPs_28330 0 0 0 0 1 cytosol 1 0.500328237439584 1 0.999343525120831 hm5C_site_28690 DeepMRMD:1;iRNA_m5C:0.999343525120831 28691 chr7 128494176 128494176 1 + C G LUAD 128494192 + 128494172 128494212 41 CCACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGG CCACGCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGG < 41bp 1 0.0508282447950507 1 0.0802786946296692 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128494192 chr7:128494176 synonymous SNV . 0 5 hm5C_associated_SNPs_28331 0 0 0 0 0 chromatin 1 0.500231643744027 1 0.999536712511946 hm5C_site_28691 DeepMRMD:1;iRNA_m5C:0.999536712511946 28692 chr7 128494176 128494176 1 + C G LUAD 128494193 + 128494173 128494213 41 CACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGGG CACGCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGGG < 41bp 1 0.0152683138021354 1 0.210112452507019 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128494193 chr7:128494176 synonymous SNV . 0 4 hm5C_associated_SNPs_28332 0 0 0 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_28692 DeepMRMD:1;iRNA_m5C:0.999536712157814 28693 chr5 14280519 14280519 1 + C G LUAD 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAGACTGATTTCCTATCTAGCCTGT < 41bp 1 0.317725191305255 1 0.159346163272858 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280519 synonymous SNV . 0 23 hm5C_associated_SNPs_28333 0 0 1 0 2 Nucleus 1 0.500231643885876 1 0.999536712228248 hm5C_site_28693 DeepMRMD:1;iRNA_m5C:0.999536712228248 28694 chr6 80816606 80816606 1 + G C LUAD 80816605 + 80816585 80816625 41 GATCCGGAGCCCCGGGAGTACGGTGAGCCCTGGGACTGCCC GATCCGGAGCCCCGGGAGTACCGTGAGCCCTGGGACTGCCC < 41bp 1 0.549059358109904 1 0.177960425615311 experiment 0.901881283780193 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BCKDHB ENSG00000083123 CDS Human protein_coding chr6:80816605 chr6:80816606 nonsynonymous SNV 0.071 3 22 hm5C_associated_SNPs_28334 0 0 0 0 1 Ribosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_28694 DeepMRMD:1;iRNA_m5C:0.999536712157806 28695 chr2 73461511 73461511 1 + T A LUAD 73461503 + 73461483 73461523 41 CGGGCCGCTGAATAAGCTTCCAAAATGATGGTGAGTGGCGT CGGGCCGCTGAATAAGCTTCCAAAATGAAGGTGAGTGGCGT < 41bp 1 0.632401804951002 1 0.51884663105011 experiment 0.735196390097996 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73461503 chr2:73461511 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_28335 0 0 1 0 1 Cytosol 1 0.500231643921583 0.96230673789978 0.999536712156834 hm5C_site_28695 DeepMRMD:0.96230673789978;iRNA_m5C:0.999536712156834 28696 chr11 722496 722496 1 + C A LUAD 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTACC < 41bp 1 0.212450842040668 1 0.106298387050629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722496 nonsynonymous SNV . 0 39 hm5C_associated_SNPs_28336 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28696 DeepMRMD:1;iRNA_m5C:0.999536712157815 28697 chr8 102381116 102381116 1 + G C LUAD 102381132 + 102381112 102381152 41 TCTTGATTCCACGTTCCCTCCACAAAATGCCTGGCGAAGCC TCTTCATTCCACGTTCCCTCCACAAAATGCCTGGCGAAGCC < 41bp 1 0.681426646932624 1 0.580490708351135 experiment 0.637146706134752 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NACAP1 ENSG00000228224 ncRNA_exonic Human transcribed_processed_pseudogene chr8:102381132 chr8:102381116 . . 0 5 hm5C_associated_SNPs_28337 0 0 0 0 1 unknown 1 0.500231644208108 0.83901858329773 0.999536711583783 hm5C_site_28697 DeepMRMD:0.83901858329773;iRNA_m5C:0.999536711583783 28698 chr6 33243778 33243778 1 + C T LUAD 33243758 + 33243738 33243778 41 CCAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCC CCAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCT < 41bp 1 0.144710303801097 1 0.0408784747123718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243758 chr6:33243778 stopgain 0.998 1 41 hm5C_associated_SNPs_28338 0 0 1 2 2 Cytosol 1 0.500231644163208 1 0.999536711673583 hm5C_site_28698 DeepMRMD:1;iRNA_m5C:0.999536711673583 28699 chr6 33243778 33243778 1 + C T LUAD 33243759 + 33243739 33243779 41 CAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCCA CAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCTA < 41bp 1 0.34970026891938 1 0.157465636730194 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243759 chr6:33243778 stopgain 0.998 1 40 hm5C_associated_SNPs_28339 0 0 1 2 2 Cytosol 1 0.50023164395038 1 0.99953671209924 hm5C_site_28699 DeepMRMD:1;iRNA_m5C:0.99953671209924 28700 chr6 33243778 33243778 1 + C T LUAD 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCTAGTACAAGATCCCA < 41bp 1 0.26903442632418 1 0.031734436750412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243778 stopgain 0.998 1 27 hm5C_associated_SNPs_28340 0 0 1 2 2 Cytosol 1 0.500231636132587 1 0.999536727734826 hm5C_site_28700 DeepMRMD:1;iRNA_m5C:0.999536727734826 28701 chr1 44878341 44878341 1 + G T LUAD 44878350 + 44878330 44878370 41 TGCTGTCTCTGGCCTCATTTCTGATCGGGAAGCCTCATCTA TGCTGTCTCTGTCCTCATTTCTGATCGGGAAGCCTCATCTA < 41bp 1 0.407415379380952 1 0.265668570995331 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878350 chr1:44878341 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_28341 0 0 1 0 1 Ribosome 1 0.500231643922706 1 0.999536712154587 hm5C_site_28701 DeepMRMD:1;iRNA_m5C:0.999536712154587 28702 chr1 95639405 95639405 1 + C T LUAD 95639425 + 95639405 95639445 41 CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG TGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG < 41bp 1 0.282524786817786 1 0.437839716672897 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95639425 chr1:95639405 nonsynonymous SNV 0.983 5 1 hm5C_associated_SNPs_28342 0 0 1 0 2 unknown 1 0.500231643905312 1 0.999536712189375 hm5C_site_28702 DeepMRMD:1;iRNA_m5C:0.999536712189375 28703 chr21 30715097 30715097 1 + T C LUAD 30715106 + 30715086 30715126 41 TGTCGTCAGAGTGGTGGGATCTCAGATTTCTGTCAGCAGAT TGTCGTCAGAGCGGTGGGATCTCAGATTTCTGTCAGCAGAT < 41bp 1 0.660107727835805 1 0.697778582572937 experiment 0.679784544328391 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BACH1 ENSG00000156273 CDS Human protein_coding chr21:30715106 chr21:30715097 synonymous SNV . 0 12 hm5C_associated_SNPs_28343 0 0 1 0 0 Cytosol 1 0.500231643938333 0.604442834854126 0.999536712123335 hm5C_site_28703 DeepMRMD:0.604442834854126;iRNA_m5C:0.999536712123335 28704 chr7 142458515 142458515 1 + C T LUAD 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGTTC < 41bp 1 0.0638335406248415 1 0.0138239860534668 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458515 synonymous SNV . 0 39 hm5C_associated_SNPs_28344 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28704 DeepMRMD:1;iRNA_m5C:0.999536712157815 28705 chr7 142458515 142458515 1 + C T LUAD 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGTTCCCT < 41bp 1 0.0533824660682198 1 0.0353833734989166 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458515 synonymous SNV . 0 36 hm5C_associated_SNPs_28345 0 0 0 0 2 Cytosol 1 0.500231643942842 1 0.999536712114316 hm5C_site_28705 DeepMRMD:1;iRNA_m5C:0.999536712114316 28706 chr7 142458515 142458515 1 + C T LUAD 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGTTCCCTC < 41bp 1 0.200873780227035 1 0.29887455701828 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458515 synonymous SNV . 0 35 hm5C_associated_SNPs_28346 0 0 0 0 2 Cytosol 1 0.500231643869527 1 0.999536712260945 hm5C_site_28706 DeepMRMD:1;iRNA_m5C:0.999536712260945 28707 chr7 142458515 142458515 1 + C T LUAD 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGGTGGTTCCCTCAT < 41bp 1 0.330790928006566 1 0.430681109428406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458515 synonymous SNV . 0 33 hm5C_associated_SNPs_28347 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_28707 DeepMRMD:1;iRNA_m5C:0.999536712157815 28708 chr7 142458515 142458515 1 + C T LUAD 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGGTGGTTCCCTCATCAA < 41bp 1 0.575144250959476 1 0.257992476224899 experiment 0.849711498081047 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458515 synonymous SNV . 0 30 hm5C_associated_SNPs_28348 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_28708 DeepMRMD:1;iRNA_m5C:0.999536712157816 28709 chr7 142458515 142458515 1 + C T LUAD 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGTTCCCTCATCAACGAACAGTGGG < 41bp 1 0.0818983399359051 1 0.0328381359577179 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458515 synonymous SNV . 0 19 hm5C_associated_SNPs_28349 0 0 0 0 2 Cytosol 1 0.500231647383585 1 0.999536705232831 hm5C_site_28709 DeepMRMD:1;iRNA_m5C:0.999536705232831 28710 chr7 142458515 142458515 1 + C T LUAD 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGTTCCCTCATCAACGAACAGTGGGT < 41bp 1 0.203610346380442 1 0.0446296334266663 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458515 synonymous SNV . 0 18 hm5C_associated_SNPs_28350 0 0 0 0 2 Cytosol 1 0.500230340722842 1 0.999539318554315 hm5C_site_28710 DeepMRMD:1;iRNA_m5C:0.999539318554315 28711 chr7 142458515 142458515 1 + C T LUAD 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGTTCCCTCATCAACGAACAGTGGGTG < 41bp 1 0.438164266114676 1 0.178741157054901 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458515 synonymous SNV . 0 17 hm5C_associated_SNPs_28351 0 0 0 0 2 Cytosol 1 0.500231781050121 1 0.999536437899759 hm5C_site_28711 DeepMRMD:1;iRNA_m5C:0.999536437899759 28712 chr7 142458515 142458515 1 + C T LUAD 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGTTCCCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.463610792455264 1 0.690230071544647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458515 synonymous SNV . 0 15 hm5C_associated_SNPs_28352 0 0 0 0 2 Cytosol 1 0.500231639592535 0.619539856910706 0.99953672081493 hm5C_site_28712 DeepMRMD:0.619539856910706;iRNA_m5C:0.99953672081493 28713 chr7 142458515 142458515 1 + C T LUAD 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGTTCCCTCATCAACGAACAGTGGGTGGTATC < 41bp 1 0.659707343301228 1 0.734217405319214 experiment 0.680585313397543 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458515 synonymous SNV . 0 12 hm5C_associated_SNPs_28353 0 0 0 0 2 Cytosol 1 0.500231643921092 0.531565189361572 0.999536712157815 hm5C_site_28713 DeepMRMD:0.531565189361572;iRNA_m5C:0.999536712157815 28714 chr7 142458515 142458515 1 + C T LUAD 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGTTCCCTCATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.422738003417988 1 0.350324600934982 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458515 synonymous SNV . 0 9 hm5C_associated_SNPs_28354 0 0 0 0 2 Cytosol 1 0.500231652504941 1 0.999536694990119 hm5C_site_28714 DeepMRMD:1;iRNA_m5C:0.999536694990119 28715 chr7 142458515 142458515 1 + C T LUAD 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGTTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.452579643298597 1 0.509176731109619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458515 synonymous SNV . 0 5 hm5C_associated_SNPs_28355 0 0 0 0 2 Cytosol 1 0.500231643923928 0.981646537780762 0.999536712152144 hm5C_site_28715 DeepMRMD:0.981646537780762;iRNA_m5C:0.999536712152144 28716 chr17 21731316 21731316 1 + A T LUAD 21731317 + 21731297 21731337 41 GCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGCGGTTCTCTTTCTGACTACAACATCC < 41bp 1 0.178819904505978 1 0.165258556604385 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731317 chr17:21731316 synonymous SNV . 0 20 hm5C_associated_SNPs_28356 0 0 1 0 0 Ribosome 1 0.500231643838927 1 0.999536712322146 hm5C_site_28716 DeepMRMD:1;iRNA_m5C:0.999536712322146 28717 chr15 94841680 94841680 1 + C T LUAD 94841673 + 94841653 94841693 41 TGATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCGGC TGATCTCCTGGAGGCTGAGGCCTTGGCTCCAGAGGGCCGGC < 41bp 1 0.187224324334123 1 0.0593486130237579 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841673 chr15:94841680 synonymous SNV . 0 28 hm5C_associated_SNPs_28357 0 0 0 0 0 exosome 1 0.500231643921087 1 0.999536712157827 hm5C_site_28717 DeepMRMD:1;iRNA_m5C:0.999536712157827 28718 chr15 40284993 40284993 1 + A T LUAD 40284974 + 40284954 40284994 41 GTTTTCCTCCACACAGGTCACTTAACTGGGATGGTTGGCAC GTTTTCCTCCACACAGGTCACTTAACTGGGATGGTTGGCTC < 41bp 1 0.41059667868121 1 0.739570796489716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40284974 chr15:40284993 nonsynonymous SNV 0.997 4 40 hm5C_associated_SNPs_28359 0 0 1 0 2 Ribosome 1 0.500231656664079 0.520858407020568 0.999536686671843 hm5C_site_28718 DeepMRMD:0.520858407020568;iRNA_m5C:0.999536686671843 28719 chr18 55996235 55996235 1 + C T LUAD 55996248 + 55996228 55996268 41 GACGTGTCCTCGGAGTCGGACAATAACATCAGACAGATCAA GACGTGTTCTCGGAGTCGGACAATAACATCAGACAGATCAA < 41bp 1 0.297398104240171 1 0.214750647544861 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:55996248 chr18:55996235 nonsynonymous SNV 0.749 0 8 hm5C_associated_SNPs_28362 0 0 1 0 1 Cytosol 1 0.500231643922508 1 0.999536712154984 hm5C_site_28719 DeepMRMD:1;iRNA_m5C:0.999536712154984 28720 chr11 66282099 66282099 1 + C T LUAD 66282089 + 66282069 66282109 41 CTCAGACCCTACTTCAAGTTCAGCCTGCCCCAATTGCCTCC CTCAGACCCTACTTCAAGTTCAGCCTGCCCTAATTGCCTCC < 41bp 1 0.3232065576832 1 0.234434396028519 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66282089 chr11:66282099 stopgain 0.362 0 31 hm5C_associated_SNPs_28363 0 0 0 0 1 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_28720 DeepMRMD:1;iRNA_m5C:0.999536712157815 28721 chr14 105355939 105355939 1 + G T LUAD 105355938 + 105355918 105355958 41 ACGGCTCCCCCAAACACACACGCTCCCACACCTCAACAGCC ACGGCTCCCCCAAACACACACTCTCCCACACCTCAACAGCC < 41bp 1 0.0273809335531152 1 0.127631634473801 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105355938 chr14:105355939 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_28364 0 0 1 0 1 Ribosome 1 0.500231645007271 1 0.999536709985458 hm5C_site_28721 DeepMRMD:1;iRNA_m5C:0.999536709985458 28722 chr1 156876638 156876638 1 + G A LUAD 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCGATCCCCAGACTGGAACCTGCTTCTGCCCCGCAGAGAG < 41bp 1 0.391005014505981 1 0.235205560922623 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876638 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_28365 0 0 0 0 1 cytosol 1 0.500231643783103 1 0.999536712433794 hm5C_site_28722 DeepMRMD:1;iRNA_m5C:0.999536712433794 28723 chr1 62237198 62237198 1 + A G LUAD 62237207 + 62237187 62237227 41 TGCATTATTACAACAAACCACTGGATCTTTGAGACTGATTG TGCATTATTACGACAAACCACTGGATCTTTGAGACTGATTG < 41bp 1 0.558134057642347 1 0.256442725658417 experiment 0.883731884715306 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PATJ ENSG00000132849 CDS Human protein_coding chr1:62237207 chr1:62237198 nonsynonymous SNV 0.607 3 12 hm5C_associated_SNPs_28366 0 0 1 0 0 Nucleus 1 0.50017421060684 1 0.99965157878632 hm5C_site_28723 DeepMRMD:1;iRNA_m5C:0.99965157878632 28724 chr21 47706941 47706941 1 + G C LUAD 47706944 + 47706924 47706964 41 CAGAAATTTGACCTGGGGATCATCTGTGTTGACAACAAGAA CAGAAATTTGACCTGGGCATCATCTGTGTTGACAACAAGAA < 41bp 1 0.154305740165898 1 0.170276254415512 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control YBEY ENSG00000182362 CDS Human protein_coding chr21:47706944 chr21:47706941 synonymous SNV . 0 18 hm5C_associated_SNPs_28367 0 0 1 0 1 chromatin 1 0.500231643917146 1 0.999536712165708 hm5C_site_28724 DeepMRMD:1;iRNA_m5C:0.999536712165708 28725 chr4 1730435 1730435 1 + G T LUAD 1730416 + 1730396 1730436 41 AAGTCTGGTTGCAGTGAGGCCCAGCCCCCAGAAAGCCCTGA AAGTCTGGTTGCAGTGAGGCCCAGCCCCCAGAAAGCCCTTA < 41bp 1 0.0978135724777768 1 0.251341700553894 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1730416 chr4:1730435 stopgain 0.003 0 40 hm5C_associated_SNPs_28368 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28725 DeepMRMD:1;iRNA_m5C:0.999536712157815 28726 chr5 139820670 139820670 1 + G A LUAD 139820688 + 139820668 139820708 41 TAGATATTGTGAAATTATTACTTCTTCATGATGCTGATGTC TAAATATTGTGAAATTATTACTTCTTCATGATGCTGATGTC < 41bp 1 0.08715817624128 1 0.204266935586929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139820688 chr5:139820670 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_28369 0 0 1 0 2 unknown 1 0.500231644607024 1 0.999536710785951 hm5C_site_28726 DeepMRMD:1;iRNA_m5C:0.999536710785951 28727 chrX 41025388 41025388 1 + G A LUAD 41025376 + 41025356 41025396 41 TTTTGAGCGATTCTTCAAAGCTGTGAATTGTCGAGAAGGAA TTTTGAGCGATTCTTCAAAGCTGTGAATTGTCAAGAAGGAA < 41bp 1 0.138799785507153 1 0.0675138533115387 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41025376 chrX:41025388 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_28370 0 0 1 0 0 Nucleus 1 0.500173207373171 1 0.999653585253657 hm5C_site_28727 DeepMRMD:1;iRNA_m5C:0.999653585253657 28728 chr1 120285561 120285561 1 + G T LUAD 120285545 + 120285525 120285565 41 GGGCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGGCTCA GGGCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGTCTCA < 41bp 1 0.511263369894152 1 0.055134654045105 experiment 0.977473260211695 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120285545 chr1:120285561 synonymous SNV . 0 37 hm5C_associated_SNPs_28371 0 0 1 1 0 Ribosome 1 0.500231644511182 1 0.999536710977636 hm5C_site_28728 DeepMRMD:1;iRNA_m5C:0.999536710977636 28729 chr1 120285561 120285561 1 + G T LUAD 120285547 + 120285527 120285567 41 GCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGGCTCAAT GCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGTCTCAAT < 41bp 1 0.253372236320872 1 0.0160441398620605 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120285547 chr1:120285561 synonymous SNV . 0 35 hm5C_associated_SNPs_28372 0 0 1 1 0 Ribosome 1 0.500231520169366 1 0.999536959661268 hm5C_site_28729 DeepMRMD:1;iRNA_m5C:0.999536959661268 28730 chr2 162242061 162242061 1 + C G LUAD 162242075 + 162242055 162242095 41 GGGTCACTTAAACAAGCCATCTATCCAGGTATTGCCTATAT GGGTCAGTTAAACAAGCCATCTATCCAGGTATTGCCTATAT < 41bp 1 0.102466097245538 1 0.153794348239899 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162242075 chr2:162242061 nonsynonymous SNV 0.999 4 7 hm5C_associated_SNPs_28373 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28730 DeepMRMD:1;iRNA_m5C:0.999536712157815 28731 chr8 30332327 30332327 1 + G T LUAD 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT GGACCCTATTTGTCAGTGGCCTTCCTCTTGATATCAAACCT < 41bp 1 0.0614846547943741 1 0.0538283288478851 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332327 synonymous SNV . 0 29 hm5C_associated_SNPs_28374 0 0 1 0 2 Nucleus 1 0.500231643921038 1 0.999536712157923 hm5C_site_28731 DeepMRMD:1;iRNA_m5C:0.999536712157923 28732 chr8 56866463 56866463 1 + A T LUAD 56866453 + 56866433 56866473 41 TTAGTCCCAAGCCACAGAAGCCATGGGATAAAGATGCCTGG TTAGTCCCAAGCCACAGAAGCCATGGGATATAGATGCCTGG < 41bp 1 0.0940224487267031 1 0.402371108531952 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56866453 chr8:56866463 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_28375 0 0 1 0 2 Cytosol 1 0.500231645835839 1 0.999536708328321 hm5C_site_28732 DeepMRMD:1;iRNA_m5C:0.999536708328321 28733 chr12 22208502 22208502 1 + G A LUAD 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TCTCTGTTATGAGACGCCATCAGTTTCGATGGAGTGAAATT < 41bp 1 0.303879355808166 1 0.106404840946198 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208502 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_28376 0 0 1 3 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28733 DeepMRMD:1;iRNA_m5C:0.999536712157815 28734 chr1 39927593 39927593 1 + G A LUAD 39927585 + 39927565 39927605 41 CACCAAGTTAGAGATGACTGCTGTGGCTGACATTTTCGACC CACCAAGTTAGAGATGACTGCTGTGGCTAACATTTTCGACC < 41bp 1 0.129440630311624 1 0.0850393176078796 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39927585 chr1:39927593 nonsynonymous SNV 0.999 4 29 hm5C_associated_SNPs_28377 0 0 1 0 0 Endoplasmic reticulum 1 0.500261329521793 1 0.999477340956414 hm5C_site_28734 DeepMRMD:1;iRNA_m5C:0.999477340956414 28735 chr8 20073974 20073974 1 + A G LUAD 20073985 + 20073965 20074005 41 GAGGGGCAGATCTATGTGGACAGACAGCTGCACAACAGACA GAGGGGCAGGTCTATGTGGACAGACAGCTGCACAACAGACA < 41bp 1 0.313044659204718 1 0.267957597970963 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20073985 chr8:20073974 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_28378 0 0 1 0 2 Ribosome 1 0.500231643901911 1 0.999536712196178 hm5C_site_28735 DeepMRMD:1;iRNA_m5C:0.999536712196178 28736 chr10 103292158 103292158 1 + T C LUAD 103292177 + 103292157 103292197 41 ATAGTAAGCGGCCTTCGAGACAACACAATCAAGGTGAGGTC ACAGTAAGCGGCCTTCGAGACAACACAATCAAGGTGAGGTC < 41bp 1 0.581520101326649 1 0.363532960414886 experiment 0.836959797346702 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BTRC ENSG00000166167 CDS Human protein_coding chr10:103292177 chr10:103292158 nonsynonymous SNV 0.919 4 2 hm5C_associated_SNPs_28379 0 0 0 0 1 chromatin 1 0.500231643921078 1 0.999536712157844 hm5C_site_28736 DeepMRMD:1;iRNA_m5C:0.999536712157844 28737 chr7 100454719 100454719 1 + C T LUAD 100454701 + 100454681 100454721 41 GTGGGGCCGAGGGACATCCGCTTGACTCCTAGGCCTGGCCC GTGGGGCCGAGGGACATCCGCTTGACTCCTAGGCCTGGTCC < 41bp 1 0.66251992869704 1 0.4874487221241 experiment 0.674960142605919 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC12A9 ENSG00000146828 CDS Human protein_coding chr7:100454701 chr7:100454719 synonymous SNV . 0 39 hm5C_associated_SNPs_28380 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28737 DeepMRMD:1;iRNA_m5C:0.999536712157815 28738 chrX 107842032 107842032 1 + C T LUAD 107842027 + 107842007 107842047 41 CCTATGGGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGG CCTATGGGTCCCCCTGGTTTCGGCCTTCCAGGCCCAGTAGG < 41bp 1 0.544462127549442 1 0.619309067726135 experiment 0.911075744901115 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107842027 chrX:107842032 nonsynonymous SNV 0.998 2 26 hm5C_associated_SNPs_28381 0 0 0 0 1 Ribosome 1 0.500231643921092 0.76138186454773 0.999536712157815 hm5C_site_28738 DeepMRMD:0.76138186454773;iRNA_m5C:0.999536712157815 28739 chr11 65270568 65270568 1 + C G LUAD 65270555 + 65270535 65270575 41 GATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTT GATCAAGTGGATTGAGGAGGCTGTGCTGTGTGCGAATGTTT < 41bp 1 0.471377060720704 1 0.181026488542557 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270555 chr11:65270568 . . 0 34 hm5C_associated_SNPs_28382 0 0 1 3 0 unknown 1 0.500231412825118 1 0.999537174349765 hm5C_site_28739 DeepMRMD:1;iRNA_m5C:0.999537174349765 28740 chr11 65270568 65270568 1 + C G LUAD 65270560 + 65270540 65270580 41 AGTGGATTGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTT AGTGGATTGAGGAGGCTGTGCTGTGTGCGAATGTTTCGTTT < 41bp 1 0.558570455572122 1 0.110893368721008 experiment 0.882859088855755 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270560 chr11:65270568 . . 0 29 hm5C_associated_SNPs_28383 0 0 1 3 0 unknown 1 0.500231077543211 1 0.999537844913579 hm5C_site_28740 DeepMRMD:1;iRNA_m5C:0.999537844913579 28741 chr11 65270568 65270568 1 + C G LUAD 65270567 + 65270547 65270587 41 TGAGGAGGCTGTGCTGTGTGCCAATGTTTCGTTTGCCTCAG TGAGGAGGCTGTGCTGTGTGCGAATGTTTCGTTTGCCTCAG < 41bp 1 0.556961027196536 1 0.400014966726303 experiment 0.886077945606929 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270567 chr11:65270568 . . 0 22 hm5C_associated_SNPs_28384 0 0 1 3 0 unknown 1 0.500231643383595 1 0.99953671323281 hm5C_site_28741 DeepMRMD:1;iRNA_m5C:0.99953671323281 28742 chr7 129064734 129064734 1 + G C LUAD 129064717 + 129064697 129064737 41 TTCACCTTTGATCACTAGGGCCGCCTGCTGAACCTTAGCTG TTCACCTTTGATCACTAGGGCCGCCTGCTGAACCTTACCTG < 41bp 1 0.0799717912862509 1 0.169242352247238 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064717 chr7:129064734 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_28385 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_28742 DeepMRMD:1;iRNA_m5C:0.999536712157815 28743 chr7 98609796 98609796 1 + G A LUAD 98609794 + 98609774 98609814 41 TCTCTCGGCCGCCGGGCAGCCAGAGAACATGGACAGCCAGC TCTCTCGGCCGCCGGGCAGCCAAAGAACATGGACAGCCAGC < 41bp 1 0.223860250259999 1 0.790199160575867 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98609794 chr7:98609796 nonsynonymous SNV 0.968 2 23 hm5C_associated_SNPs_28386 0 0 1 0 0 Nucleus 1 0.500231683897485 0.419601678848266 0.99953663220503 hm5C_site_28743 DeepMRMD:0.419601678848266;iRNA_m5C:0.99953663220503 28744 chr17 66352936 66352936 1 + A T LUAD 66352925 + 66352905 66352945 41 AAGTATGCTGAGAAAGCAACCCAGTTCATCCAGCGTGCAAG AAGTATGCTGAGAAAGCAACCCAGTTCATCCTGCGTGCAAG < 41bp 1 0.308407485940755 1 0.297095417976379 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARSG ENSG00000141337 CDS Human protein_coding chr17:66352925 chr17:66352936 nonsynonymous SNV 0.777 1 32 hm5C_associated_SNPs_28387 0 0 1 0 1 chromatin 1 0.500231888980456 1 0.999536222039088 hm5C_site_28744 DeepMRMD:1;iRNA_m5C:0.999536222039088 28745 chr3 193336694 193336694 1 + G A LUAD 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCATG < 41bp 1 0.0453452188126769 1 0.0491491556167603 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336694 nonsynonymous SNV 0.999 0 39 hm5C_associated_SNPs_28388 0 0 1 0 2 Nucleus 1 0.500231640690153 1 0.999536718619694 hm5C_site_28745 DeepMRMD:1;iRNA_m5C:0.999536718619694 28746 chr11 65273348 65273348 1 + G C LUAD 65273337 + 65273317 65273357 41 TGCTGGGTGGGAACATGTAACTTGTAGACTGGAGAAGATAG TGCTGGGTGGGAACATGTAACTTGTAGACTGCAGAAGATAG < 41bp 1 0.679527713840164 1 0.094802588224411 experiment 0.640944572319671 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273337 chr11:65273348 . . 0 32 hm5C_associated_SNPs_28390 0 0 1 3 0 unknown 1 0.500231650807262 1 0.999536698385476 hm5C_site_28746 DeepMRMD:1;iRNA_m5C:0.999536698385476 28747 chr4 114161692 114161692 1 + G C LUAD 114161710 + 114161690 114161730 41 TGGCAACTCTTCTTCTAAACCGGGGAGCTGCTGTGGACTTC TGCCAACTCTTCTTCTAAACCGGGGAGCTGCTGTGGACTTC < 41bp 1 0.680083273552309 1 0.831228137016296 experiment 0.639833452895381 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ANK2 ENSG00000145362 CDS Human protein_coding chr4:114161710 chr4:114161692 nonsynonymous SNV 0.954 4 3 hm5C_associated_SNPs_28392 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.337543725967408 0.999536712157815 hm5C_site_28747 DeepMRMD:0.337543725967408;iRNA_m5C:0.999536712157815 28748 chr5 64082385 64082385 1 + G A LUAD 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TCCTTTTGATGACATCATTCCAAAGGAAATTAAAAGGCTGA < 41bp 1 0.229716601990323 1 0.657532632350922 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082385 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_28393 0 0 1 0 2 Nucleus 1 0.500231643915787 0.684934735298156 0.999536712168426 hm5C_site_28748 DeepMRMD:0.684934735298156;iRNA_m5C:0.999536712168426 28749 chr6 12296272 12296272 1 + A T LUAD 12296292 + 12296272 12296312 41 ATGTGACCCACAACCGAGCACATTGGTGACAGACCTTCGGG TTGTGACCCACAACCGAGCACATTGGTGACAGACCTTCGGG < 41bp 1 0.536892801176396 1 0.11005374789238 experiment 0.926214397647209 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EDN1 ENSG00000078401 CDS Human protein_coding chr6:12296292 chr6:12296272 nonsynonymous SNV 0.000 2 1 hm5C_associated_SNPs_28394 0 0 0 0 1 exosome 1 0.500231517155279 1 0.999536965689442 hm5C_site_28749 DeepMRMD:1;iRNA_m5C:0.999536965689442 28750 chrX 48759733 48759733 1 + G C LUAD 48759720 + 48759700 48759740 41 GGACCGCGGGTATGACAAGGCAGACCGGGAAGAGGGCAAAG GGACCGCGGGTATGACAAGGCAGACCGGGAAGACGGCAAAG < 41bp 1 0.63086530889816 1 0.208364635705948 experiment 0.73826938220368 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759720 chrX:48759733 nonsynonymous SNV 0.997 0 34 hm5C_associated_SNPs_28395 0 0 1 0 1 Ribosome 1 0.500231643921085 1 0.999536712157829 hm5C_site_28750 DeepMRMD:1;iRNA_m5C:0.999536712157829 28751 chr4 79512740 79512740 1 + C G LUAD 79512760 + 79512740 79512780 41 CTGGTGACTTCCGGAAAGCTCTGTTGACTTTGGCAGATGTA GTGGTGACTTCCGGAAAGCTCTGTTGACTTTGGCAGATGTA < 41bp 1 0.28704836288542 1 0.170700818300247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79512760 chr4:79512740 nonsynonymous SNV 0.995 4 1 hm5C_associated_SNPs_28397 0 0 0 0 2 cytosol 1 0.500231643971201 1 0.999536712057598 hm5C_site_28751 DeepMRMD:1;iRNA_m5C:0.999536712057598 28752 chr20 42695418 42695418 1 + C G LUAD 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTCAGCTGGCCCATCCAA < 41bp 1 0.439042618047212 1 0.138940393924713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695418 nonsynonymous SNV 0.909 1 28 hm5C_associated_SNPs_28398 0 0 1 0 2 exosome 1 0.500231637461751 1 0.999536725076498 hm5C_site_28752 DeepMRMD:1;iRNA_m5C:0.999536725076498 28753 chr11 118452185 118452185 1 + T A LUAD 118452203 + 118452183 118452223 41 ATTTTAGAAGATTTGGAGACCCTAAGGCTCTTCTCAAGAGT ATATTAGAAGATTTGGAGACCCTAAGGCTCTTCTCAAGAGT < 41bp 1 0.1704416007753 1 0.083447128534317 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARCN1 ENSG00000095139 CDS Human protein_coding chr11:118452203 chr11:118452185 synonymous SNV . 0 3 hm5C_associated_SNPs_28399 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_28753 DeepMRMD:1;iRNA_m5C:0.999536712157816 28754 chr17 77757733 77757733 1 + G T LUAD 77757717 + 77757697 77757737 41 CCAAACCCGAGCTGAAGGATCCCATCCGGAAGAAGCGGGGA CCAAACCCGAGCTGAAGGATCCCATCCGGAAGAAGCTGGGA < 41bp 1 0.114185863114278 1 0.149566531181335 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77757717 chr17:77757733 nonsynonymous SNV 0.214 3 37 hm5C_associated_SNPs_28400 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_28754 DeepMRMD:1;iRNA_m5C:0.999536712157815 28755 chr5 102343170 102343170 1 + G T LUAD 102343174 + 102343154 102343194 41 TCTGCAGAGTCTTCAGGGAGCAGTCCTCTGCCAGGCCAGTT TCTGCAGAGTCTTCAGTGAGCAGTCCTCTGCCAGGCCAGTT < 41bp 1 0.207421005027849 1 0.332061260938644 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102343174 chr5:102343170 nonsynonymous SNV 0.940 0 17 hm5C_associated_SNPs_28401 0 0 1 0 0 Ribosome 1 0.500231643921003 1 0.999536712157994 hm5C_site_28755 DeepMRMD:1;iRNA_m5C:0.999536712157994 28756 chr17 76061008 76061008 1 + G A LUAD 76061001 + 76060981 76061021 41 TGGCGCACCTGTTGCTGCCTCAGCCCTGTGCAAACCAGGTA TGGCGCACCTGTTGCTGCCTCAGCCCTATGCAAACCAGGTA < 41bp 1 0.198592404733911 1 0.666551828384399 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76061001 chr17:76061008 synonymous SNV . 0 28 hm5C_associated_SNPs_28402 0 0 1 0 1 chromatin 1 0.500231649416348 0.666896343231202 0.999536701167304 hm5C_site_28756 DeepMRMD:0.666896343231202;iRNA_m5C:0.999536701167304 28757 chr6 44219921 44219921 1 + A G LUAD 44219903 + 44219883 44219923 41 CCAAGGAGGGTCTGGAGCTGCCTGAGGATGAGGAGGAGAAG CCAAGGAGGGTCTGGAGCTGCCTGAGGATGAGGAGGAGGAG < 41bp 1 0.475719949054164 1 0.178374111652374 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219903 chr6:44219921 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_28404 0 0 1 0 1 Nucleus 1 0.500231772532579 1 0.999536454934841 hm5C_site_28757 DeepMRMD:1;iRNA_m5C:0.999536454934841 28758 chr22 42276797 42276797 1 + G T LUAD 42276812 + 42276792 42276832 41 CGCCTGGACCTGGCCTGCAGCCTCTCCTGGAACGTGATCCG CGCCTTGACCTGGCCTGCAGCCTCTCCTGGAACGTGATCCG < 41bp 1 0.0604861968764007 1 0.04303377866745 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42276812 chr22:42276797 stopgain 1.000 0 6 hm5C_associated_SNPs_28407 0 0 1 0 1 Ribosome 1 0.500231643917846 1 0.999536712164308 hm5C_site_28758 DeepMRMD:1;iRNA_m5C:0.999536712164308 28759 chr1 109806903 109806903 1 + T A LUAD 109806891 + 109806871 109806911 41 AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCA AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCAAGGTCTGCA < 41bp 1 0.0340295780120406 1 0.0523159801959991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806891 chr1:109806903 nonsynonymous SNV 0.797 0 33 hm5C_associated_SNPs_28408 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_28759 DeepMRMD:1;iRNA_m5C:0.999536712157818 28760 chr1 109806903 109806903 1 + T A LUAD 109806892 + 109806872 109806912 41 GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCAC GAGCAGAGGGCAACCTGGGCCCCCGGCTGCAAGGTCTGCAC < 41bp 1 0.163187299042717 1 0.410556823015213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806892 chr1:109806903 nonsynonymous SNV 0.797 0 32 hm5C_associated_SNPs_28409 0 0 1 0 1 Endoplasmic reticulum 1 0.500232456397319 1 0.999535087205363 hm5C_site_28760 DeepMRMD:1;iRNA_m5C:0.999535087205363 28761 chr1 109806903 109806903 1 + T A LUAD 109806893 + 109806873 109806913 41 AGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACC AGCAGAGGGCAACCTGGGCCCCCGGCTGCAAGGTCTGCACC < 41bp 1 0.301163214254921 1 0.230568557977676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806893 chr1:109806903 nonsynonymous SNV 0.797 0 31 hm5C_associated_SNPs_28410 0 0 1 0 1 Endoplasmic reticulum 1 0.500231642555067 1 0.999536714889867 hm5C_site_28761 DeepMRMD:1;iRNA_m5C:0.999536714889867 28762 chr1 109806903 109806903 1 + T A LUAD 109806894 + 109806874 109806914 41 GCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCT GCAGAGGGCAACCTGGGCCCCCGGCTGCAAGGTCTGCACCT < 41bp 1 0.165917589915121 1 0.459966540336609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806894 chr1:109806903 nonsynonymous SNV 0.797 0 30 hm5C_associated_SNPs_28411 0 0 1 0 1 Endoplasmic reticulum 1 0.500231649149981 1 0.999536701700038 hm5C_site_28762 DeepMRMD:1;iRNA_m5C:0.999536701700038 28763 chr1 109806903 109806903 1 + T A LUAD 109806895 + 109806875 109806915 41 CAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCTG CAGAGGGCAACCTGGGCCCCCGGCTGCAAGGTCTGCACCTG < 41bp 1 0.29030569500004 1 0.6855708360672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806895 chr1:109806903 nonsynonymous SNV 0.797 0 29 hm5C_associated_SNPs_28412 0 0 1 0 1 Endoplasmic reticulum 1 0.500231470349371 0.6288583278656 0.999537059301258 hm5C_site_28763 DeepMRMD:0.6288583278656;iRNA_m5C:0.999537059301258 28764 chr12 121001395 121001395 1 + C A LUAD 121001403 + 121001383 121001423 41 CTTCACACGCCTCAGCAGCTCTCCTTGTTACTACTTTTACC CTTCACACGCCTAAGCAGCTCTCCTTGTTACTACTTTTACC < 41bp 1 0.38765215011485 1 0.167015761137009 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001403 chr12:121001395 synonymous SNV . 0 13 hm5C_associated_SNPs_28413 0 0 1 0 1 Ribosome 1 0.500231644181358 1 0.999536711637283 hm5C_site_28764 DeepMRMD:1;iRNA_m5C:0.999536711637283 28765 chr12 121001395 121001395 1 + C A LUAD 121001406 + 121001386 121001426 41 CACACGCCTCAGCAGCTCTCCTTGTTACTACTTTTACCAAG CACACGCCTAAGCAGCTCTCCTTGTTACTACTTTTACCAAG < 41bp 1 0.256187956576046 1 0.0650007128715515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001406 chr12:121001395 synonymous SNV . 0 10 hm5C_associated_SNPs_28414 0 0 1 0 1 Ribosome 1 0.500231643921613 1 0.999536712156774 hm5C_site_28765 DeepMRMD:1;iRNA_m5C:0.999536712156774 28766 chr10 43883130 43883130 1 + T G LUAD 43883122 - 43883102 43883142 41 AAGATGATGTAAAAATGGCCCTGAAAAAAGACAGGGAAAGC AAGATGATGTAACAATGGCCCTGAAAAAAGACAGGGAAAGC < 41bp 1 0.55925124798106 1 0.401403605937958 experiment 0.88149750403788 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HNRNPF ENSG00000169813 CDS Human protein_coding chr10:43883122 chr10:43883130 nonsynonymous SNV 0.993 1 13 hm5C_associated_SNPs_28415 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_28766 DeepMRMD:1;iRNA_m5C:0.999536712157814 28767 chr10 43883130 43883130 1 + T G LUAD 43883124 - 43883104 43883144 41 AGAAGATGATGTAAAAATGGCCCTGAAAAAAGACAGGGAAA AGAAGATGATGTAACAATGGCCCTGAAAAAAGACAGGGAAA < 41bp 1 0.154570833360323 1 0.123766213655472 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HNRNPF ENSG00000169813 CDS Human protein_coding chr10:43883124 chr10:43883130 nonsynonymous SNV 0.993 1 15 hm5C_associated_SNPs_28416 0 0 1 0 0 Cytosol 1 0.500231643921095 1 0.999536712157809 hm5C_site_28767 DeepMRMD:1;iRNA_m5C:0.999536712157809 28768 chr8 144680972 144680972 1 + C T LUAD 144680962 + 144680942 144680982 41 AGCCGCTGGTCATCGGGCGGCTGCCGGACCCGCCCAGCCTG AGCCGCTGGTCATCGGGCGGCTGCCGGACCTGCCCAGCCTG < 41bp 1 0.383865320720946 1 0.620493113994598 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TIGD5 ENSG00000179886 CDS Human protein_coding chr8:144680962 chr8:144680972 nonsynonymous SNV 0.961 2 31 hm5C_associated_SNPs_28418 0 0 1 0 0 Ribosome 1 0.500231643439571 0.759013772010804 0.999536713120858 hm5C_site_28768 DeepMRMD:0.759013772010804;iRNA_m5C:0.999536713120858 28769 chr2 220412305 220412305 1 + C T LUAD 220412324 + 220412304 220412344 41 CCGAGAGCGGGTGCTAGAGACACAGCTGAGTGCTGGGGCGA CTGAGAGCGGGTGCTAGAGACACAGCTGAGTGCTGGGGCGA < 41bp 1 0.678269757447883 1 0.180775165557861 experiment 0.643460485104234 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM198 ENSG00000188760 CDS Human protein_coding chr2:220412324 chr2:220412305 stopgain 1.000 1 2 hm5C_associated_SNPs_28419 0 0 1 0 1 chromatin 1 0.50022802417075 1 0.999543951658499 hm5C_site_28769 DeepMRMD:1;iRNA_m5C:0.999543951658499 28770 chr5 86670002 86670002 1 + T A LUAD 86670013 + 86669993 86670033 41 TTTTACATATTGAAGAAGCCCATAAACTCCCAGTAAAACAT TTTTACATAATGAAGAAGCCCATAAACTCCCAGTAAAACAT < 41bp 1 0.181962216281602 1 0.201029449701309 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RASA1 ENSG00000145715 CDS Human protein_coding chr5:86670013 chr5:86670002 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_28420 0 0 0 2 1 Nucleus 1 0.500231643921446 1 0.999536712157107 hm5C_site_28770 DeepMRMD:1;iRNA_m5C:0.999536712157107 28771 chr6 74475671 74475671 1 + G C LUAD 74475665 + 74475645 74475685 41 ACCATTAGGTGAAGGTAACTCGTGCTGATGGCAACCAACTG ACCATTAGGTGAAGGTAACTCGTGCTCATGGCAACCAACTG < 41bp 1 0.260572623879526 1 0.450431257486343 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74475665 chr6:74475671 nonsynonymous SNV 0.984 4 27 hm5C_associated_SNPs_28421 0 0 0 0 1 Ribosome 1 0.500228754524073 1 0.999542490951853 hm5C_site_28771 DeepMRMD:1;iRNA_m5C:0.999542490951853 28772 chr1 109806904 109806904 1 + G T LUAD 109806891 + 109806871 109806911 41 AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCA AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATTGTCTGCA < 41bp 1 0.0394575637519915 1 0.0518304705619812 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806891 chr1:109806904 nonsynonymous SNV 0.799 3 34 hm5C_associated_SNPs_28422 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_28772 DeepMRMD:1;iRNA_m5C:0.999536712157815 28773 chr1 109806904 109806904 1 + G T LUAD 109806892 + 109806872 109806912 41 GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCAC GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATTGTCTGCAC < 41bp 1 0.200112423087898 1 0.59497994184494 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806892 chr1:109806904 nonsynonymous SNV 0.799 3 33 hm5C_associated_SNPs_28423 0 0 1 0 1 Endoplasmic reticulum 1 0.500236962975315 0.81004011631012 0.99952607404937 hm5C_site_28773 DeepMRMD:0.81004011631012;iRNA_m5C:0.99952607404937 28774 chr1 109806904 109806904 1 + G T LUAD 109806893 + 109806873 109806913 41 AGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACC AGCAGAGGGCAACCTGGGCCCCCGGCTGCATTGTCTGCACC < 41bp 1 0.266463544291736 1 0.283645838499069 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806893 chr1:109806904 nonsynonymous SNV 0.799 3 32 hm5C_associated_SNPs_28424 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921096 1 0.999536712157808 hm5C_site_28774 DeepMRMD:1;iRNA_m5C:0.999536712157808 28775 chr1 109806904 109806904 1 + G T LUAD 109806894 + 109806874 109806914 41 GCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCT GCAGAGGGCAACCTGGGCCCCCGGCTGCATTGTCTGCACCT < 41bp 1 0.132848455046493 1 0.362790733575821 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806894 chr1:109806904 nonsynonymous SNV 0.799 3 31 hm5C_associated_SNPs_28425 0 0 1 0 1 Endoplasmic reticulum 1 0.500231674891615 1 0.99953665021677 hm5C_site_28775 DeepMRMD:1;iRNA_m5C:0.99953665021677 28776 chr1 109806904 109806904 1 + G T LUAD 109806895 + 109806875 109806915 41 CAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCTG CAGAGGGCAACCTGGGCCCCCGGCTGCATTGTCTGCACCTG < 41bp 1 0.262404886238937 1 0.512665212154388 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806895 chr1:109806904 nonsynonymous SNV 0.799 3 30 hm5C_associated_SNPs_28426 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164392109 0.974669575691224 0.99953671215782 hm5C_site_28776 DeepMRMD:0.974669575691224;iRNA_m5C:0.99953671215782 28777 chr3 126751397 126751397 1 + T A LUAD 126751389 + 126751369 126751409 41 CTGGGCAAGGACTCACCCTCCAACAAGCTGCTCTACGCCAA CTGGGCAAGGACTCACCCTCCAACAAGCAGCTCTACGCCAA < 41bp 1 0.476567223440151 1 0.582168161869049 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751389 chr3:126751397 nonsynonymous SNV 0.985 4 29 hm5C_associated_SNPs_28427 0 0 1 0 1 Ribosome 1 0.500231643921093 0.835663676261902 0.999536712157815 hm5C_site_28777 DeepMRMD:0.835663676261902;iRNA_m5C:0.999536712157815 28778 chr3 125694456 125694456 1 + C A LUAD 125694437 + 125694417 125694457 41 CCCTGTCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTCT CCCTGTCCCGTGGAGAGACGCCTCCGGTGAGAGAGCGGTAT < 41bp 1 0.139906189168273 1 0.0902200043201447 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125694437 chr3:125694456 nonsynonymous SNV 0.062 1 40 hm5C_associated_SNPs_28428 0 0 0 0 1 exosome 1 0.500231632863574 1 0.999536734272851 hm5C_site_28778 DeepMRMD:1;iRNA_m5C:0.999536734272851 28779 chr19 58153284 58153284 1 + G T LUAD 58153303 + 58153283 58153323 41 GGAGAAAGACCTGTTGAGTGCAGTGAATGTAGCAAATCCTT GTAGAAAGACCTGTTGAGTGCAGTGAATGTAGCAAATCCTT < 41bp 1 0.371864636689053 1 0.211082547903061 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF211 ENSG00000121417 CDS Human protein_coding chr19:58153303 chr19:58153284 nonsynonymous SNV 0.960 3 2 hm5C_associated_SNPs_28429 0 0 1 0 0 cytosol 1 0.500231645740615 1 0.99953670851877 hm5C_site_28779 DeepMRMD:1;iRNA_m5C:0.99953670851877 28780 chr5 147819233 147819233 1 + G A LUAD 147819249 + 147819229 147819269 41 AGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGT AGCAAAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGT < 41bp 1 0.212952714847544 1 0.0729688405990601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819249 chr5:147819233 synonymous SNV . 0 5 hm5C_associated_SNPs_28430 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_28780 DeepMRMD:1;iRNA_m5C:0.999536712157815 28781 chr5 147819233 147819233 1 + G A LUAD 147819251 + 147819231 147819271 41 CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTAT CAAAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTAT < 41bp 1 0.13640398859458 1 0.0367110669612885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819251 chr5:147819233 synonymous SNV . 0 3 hm5C_associated_SNPs_28431 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28781 DeepMRMD:1;iRNA_m5C:0.999536712157815 28782 chr11 43411214 43411214 1 + G T LUAD 43411217 + 43411197 43411237 41 AACAGAAACAATTAGTTGCTCAAAAAATTCACATAGAAGAG AACAGAAACAATTAGTTTCTCAAAAAATTCACATAGAAGAG < 41bp 1 0.542908305024111 1 0.472005844116211 experiment 0.914183389951778 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC17 ENSG00000052841 CDS Human protein_coding chr11:43411217 chr11:43411214 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_28432 0 0 1 0 1 Nucleus 1 0.500254460147525 1 0.999491079704951 hm5C_site_28782 DeepMRMD:1;iRNA_m5C:0.999491079704951 28783 chr11 125482978 125482978 1 + C G LUAD 125482974 + 125482954 125482994 41 CCAGTGAGGCCTACTCTTCTCCGTCCATTGTACTATCTGCC CCAGTGAGGCCTACTCTTCTCCGTGCATTGTACTATCTGCC < 41bp 1 0.239564499238156 1 0.636975646018982 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125482974 chr11:125482978 nonsynonymous SNV 0.953 4 25 hm5C_associated_SNPs_28433 0 0 1 0 2 Endoplasmic reticulum 1 0.500204427392052 0.726048707962036 0.999591145215897 hm5C_site_28783 DeepMRMD:0.726048707962036;iRNA_m5C:0.999591145215897 28784 chr4 146576326 146576326 1 + G T LUAD 146576316 + 146576296 146576336 41 TAGGTAATTCGTATTTCTGCCCGAAGTGGAGAGGGGATCTC TAGGTAATTCGTATTTCTGCCCGAAGTGGATAGGGGATCTC < 41bp 1 0.525843314390092 1 0.0773030519485474 experiment 0.948313371219817 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMAA ENSG00000151611 CDS Human protein_coding chr4:146576316 chr4:146576326 stopgain 1.000 1 31 hm5C_associated_SNPs_28434 0 0 1 0 1 nucleoplasm 1 0.500232749091926 1 0.999534501816147 hm5C_site_28784 DeepMRMD:1;iRNA_m5C:0.999534501816147 28785 chr1 158063219 158063219 1 + A T LUAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTTCCGGCGCCGCAAAGGCAGTGAG < 41bp 1 0.62724320996773 1 0.738637864589691 experiment 0.74551358006454 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063219 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_28435 0 0 1 0 2 cytosol 1 0.500231643921092 0.522724270820618 0.999536712157815 hm5C_site_28785 DeepMRMD:0.522724270820618;iRNA_m5C:0.999536712157815 28786 chr18 34349242 34349242 1 + T A LUAD 34349255 + 34349235 34349275 41 TAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCA TAGTTCCAGGACTATGGGAACTGATGACTCGCCCAATGTCA < 41bp 1 0.137005685998653 1 0.0937724709510803 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34349255 chr18:34349242 nonsynonymous SNV 0.999 3 8 hm5C_associated_SNPs_28436 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28786 DeepMRMD:1;iRNA_m5C:0.999536712157815 28787 chr3 49060156 49060156 1 + A G LUAD 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCGCCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.381896278736435 1 0.15136581659317 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060156 nonsynonymous SNV 0.948 3 3 hm5C_associated_SNPs_28437 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28787 DeepMRMD:1;iRNA_m5C:0.999536712157815 28788 chrX 73047023 73047023 1 + C G LUAD 73047007 - 73046987 73047027 41 CCATGTGAGATGATCCAAGACCAAAACAAGGCCCTAGACTG CCATCTGAGATGATCCAAGACCAAAACAAGGCCCTAGACTG < 41bp 1 0.266218289864704 1 0.100744396448135 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047007 chrX:73047023 . . 0 5 hm5C_associated_SNPs_28438 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28788 DeepMRMD:1;iRNA_m5C:0.999536712157815 28789 chr17 30774031 30774031 1 + G A LUAD 30774035 + 30774015 30774055 41 GAGCATCCTGGAACTGGGATCTCTCCTGGCAAAGACTGGAC GAGCATCCTGGAACTGAGATCTCTCCTGGCAAAGACTGGAC < 41bp 1 0.260276487904819 1 0.337418258190155 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30774035 chr17:30774031 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_28441 0 0 1 0 2 Ribosome 1 0.500234158472524 1 0.999531683054953 hm5C_site_28789 DeepMRMD:1;iRNA_m5C:0.999531683054953 28790 chr19 49993753 49993753 1 + G T LUAD 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCCTCCTCAAGCGGATGAACACC < 41bp 1 0.637832201190245 1 0.28656804561615 experiment 0.724335597619509 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993753 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_28442 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28790 DeepMRMD:1;iRNA_m5C:0.999536712157815 28791 chr19 41135376 41135376 1 + C G LUAD 41135396 + 41135376 41135416 41 CCTTCCGCTGCATCTGCCGCCCGGGATTCGCACCCACGCAC GCTTCCGCTGCATCTGCCGCCCGGGATTCGCACCCACGCAC < 41bp 1 0.607813042162557 1 0.890989303588867 experiment 0.784373915674886 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41135396 chr19:41135376 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_28443 0 0 1 0 1 Cytosol 1 0.500231601779159 0.218021392822266 0.999536796441681 hm5C_site_28791 DeepMRMD:0.218021392822266;iRNA_m5C:0.999536796441681 28792 chr11 65055292 65055292 1 + G T LUAD 65055284 + 65055264 65055304 41 GACCTGATTGCTGTCATCAACCATGACCGGCCAGATGTCTG GACCTGATTGCTGTCATCAACCATGACCTGCCAGATGTCTG < 41bp 1 0.105409568711961 1 0.218507438898087 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65055284 chr11:65055292 nonsynonymous SNV 0.981 2 29 hm5C_associated_SNPs_28444 0 0 1 0 1 Endoplasmic reticulum 1 0.500228026417621 1 0.999543947164758 hm5C_site_28792 DeepMRMD:1;iRNA_m5C:0.999543947164758 28793 chr11 58919341 58919341 1 + C T LUAD 58919321 + 58919301 58919341 41 AATACCCAGGCTCAAAGATTCCATTCACCTAAGAAAAATCC AATACCCAGGCTCAAAGATTCCATTCACCTAAGAAAAATCT < 41bp 1 0.0521491471227209 1 0.0298062860965729 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM111A ENSG00000166801 CDS Human protein_coding chr11:58919321 chr11:58919341 nonsynonymous SNV 0.026 0 41 hm5C_associated_SNPs_28445 0 0 0 0 0 Nucleus 1 0.500231643921085 1 0.999536712157829 hm5C_site_28793 DeepMRMD:1;iRNA_m5C:0.999536712157829 28794 chr1 153617542 153617542 1 + C T LUAD 153617536 + 153617516 153617556 41 TTTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGT TTTTTTTTTTCCCCTTTGGGCCAGGTTGGGGTATGATAGGT < 41bp 1 0.16942993627309 1 0.458980143070221 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617536 chr1:153617542 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_28446 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28794 DeepMRMD:1;iRNA_m5C:0.999536712157815 28795 chr1 153617542 153617542 1 + C T LUAD 153617537 + 153617517 153617557 41 TTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGTC TTTTTTTTTCCCCTTTGGGCCAGGTTGGGGTATGATAGGTC < 41bp 1 0.203520223537798 1 0.455877214670181 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617537 chr1:153617542 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_28447 0 0 1 0 1 Cytosol 1 0.500231599808139 1 0.999536800383722 hm5C_site_28795 DeepMRMD:1;iRNA_m5C:0.999536800383722 28796 chr6 25450173 25450173 1 + G T LUAD 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA ATTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA < 41bp 1 0.439094722857312 1 0.507946133613586 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450173 nonsynonymous SNV 0.998 0 2 hm5C_associated_SNPs_28448 0 0 0 0 2 unknown 1 0.500231621089427 0.984107732772828 0.999536757821146 hm5C_site_28796 DeepMRMD:0.984107732772828;iRNA_m5C:0.999536757821146 28797 chr2 216995607 216995607 1 + A G LUAD 216995625 + 216995605 216995645 41 CTATGGAAGTGATATAGTTCCTTTCTCTAAAGTGGATGAGG CTGTGGAAGTGATATAGTTCCTTTCTCTAAAGTGGATGAGG < 41bp 1 0.0636217888554179 1 0.0191124677658081 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216995625 chr2:216995607 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_28449 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28797 DeepMRMD:1;iRNA_m5C:0.999536712157815 28798 chr3 170009707 170009707 1 + A T LUAD 170009695 + 170009675 170009715 41 TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG TTCTGTGGTACTCCTAATTACATTGCTCCTGATATTTTAAG < 41bp 1 0.109863273254084 1 0.0430306792259216 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:170009695 chr3:170009707 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_28450 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28798 DeepMRMD:1;iRNA_m5C:0.999536712157815 28799 chr5 148743716 148743716 1 + G A LUAD 148743717 + 148743697 148743737 41 CGCCTCTGGTGGCACTATGGCATCAGCTTCCTGAGGCTGCA CGCCTCTGGTGGCACTATGACATCAGCTTCCTGAGGCTGCA < 41bp 1 0.54586203457499 1 0.205280154943466 experiment 0.90827593085002 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148743717 chr5:148743716 nonsynonymous SNV 0.995 4 20 hm5C_associated_SNPs_28451 0 0 1 0 1 Ribosome 1 0.500231639108329 1 0.999536721783341 hm5C_site_28799 DeepMRMD:1;iRNA_m5C:0.999536721783341 28800 chr6 160183048 160183048 1 + C A LUAD 160183033 + 160183013 160183053 41 GGGGCGGGGCTACCTCAGGTCCCGCCCGCGGCAGGCCTGTG GGGGCGGGGCTACCTCAGGTCCCGCCCGCGGCAGGACTGTG < 41bp 1 0.385191158240492 1 0.0656527578830719 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SOD2-OT1 ENSG00000112096;ENSG00000120437 UTR5 Human other chr6:160183033 chr6:160183048 . . 0 36 hm5C_associated_SNPs_28452 0 0 1 0 0 unknown 1 0.5002316439214 1 0.999536712157201 hm5C_site_28800 DeepMRMD:1;iRNA_m5C:0.999536712157201 28801 chr6 160183048 160183048 1 + C A LUAD 160183034 + 160183014 160183054 41 GGGCGGGGCTACCTCAGGTCCCGCCCGCGGCAGGCCTGTGG GGGCGGGGCTACCTCAGGTCCCGCCCGCGGCAGGACTGTGG < 41bp 1 0.370884016305362 1 0.16255247592926 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SOD2-OT1 ENSG00000112096;ENSG00000120437 UTR5 Human other chr6:160183034 chr6:160183048 . . 0 35 hm5C_associated_SNPs_28453 0 0 1 0 0 unknown 1 0.500231643921095 1 0.99953671215781 hm5C_site_28801 DeepMRMD:1;iRNA_m5C:0.99953671215781 28802 chr6 160183048 160183048 1 + C A LUAD 160183035 + 160183015 160183055 41 GGCGGGGCTACCTCAGGTCCCGCCCGCGGCAGGCCTGTGGG GGCGGGGCTACCTCAGGTCCCGCCCGCGGCAGGACTGTGGG < 41bp 1 0.670323527917538 1 0.20035108923912 experiment 0.659352944164924 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SOD2-OT1 ENSG00000112096;ENSG00000120437 UTR5 Human other chr6:160183035 chr6:160183048 . . 0 34 hm5C_associated_SNPs_28454 0 0 1 0 0 unknown 1 0.500231656715503 1 0.999536686568994 hm5C_site_28802 DeepMRMD:1;iRNA_m5C:0.999536686568994 28803 chr6 160183048 160183048 1 + C A LUAD 160183037 + 160183017 160183057 41 CGGGGCTACCTCAGGTCCCGCCCGCGGCAGGCCTGTGGGCT CGGGGCTACCTCAGGTCCCGCCCGCGGCAGGACTGTGGGCT < 41bp 1 0.338896739198744 1 0.475143074989319 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SOD2-OT1 ENSG00000112096;ENSG00000120437 UTR5 Human other chr6:160183037 chr6:160183048 . . 0 32 hm5C_associated_SNPs_28455 0 0 1 0 0 unknown 1 0.50023164392775 1 0.9995367121445 hm5C_site_28803 DeepMRMD:1;iRNA_m5C:0.9995367121445 28804 chr19 57910682 57910682 1 + G T LUAD 57910662 + 57910642 57910682 41 AGTTCACACCGGAGAAAGACCTTATAAGTGCAATGATTGTG AGTTCACACCGGAGAAAGACCTTATAAGTGCAATGATTGTT < 41bp 1 0.092878868794211 1 0.0895889103412628 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF548 ENSG00000188785 CDS Human protein_coding chr19:57910662 chr19:57910682 nonsynonymous SNV 0.997 3 41 hm5C_associated_SNPs_28457 0 0 1 0 0 Nucleus 1 0.500231607518462 1 0.999536784963075 hm5C_site_28804 DeepMRMD:1;iRNA_m5C:0.999536784963075 28805 chr10 102822830 102822830 1 + A T LUAD 102822848 + 102822828 102822868 41 TCACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCAT TCTCTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCAT < 41bp 1 0.0943106895433713 1 0.0724351108074188 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822848 chr10:102822830 nonsynonymous SNV 0.998 0 3 hm5C_associated_SNPs_28458 0 0 0 0 1 nucleus 1 0.500231642779248 1 0.999536714441503 hm5C_site_28805 DeepMRMD:1;iRNA_m5C:0.999536714441503 28806 chr10 102822830 102822830 1 + A T LUAD 102822849 + 102822829 102822869 41 CACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATG CTCTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATG < 41bp 1 0.0790889312603277 1 0.136078357696533 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822849 chr10:102822830 nonsynonymous SNV 0.998 0 2 hm5C_associated_SNPs_28459 0 0 0 0 1 nucleus 1 0.50023163816147 1 0.999536723677059 hm5C_site_28806 DeepMRMD:1;iRNA_m5C:0.999536723677059 28807 chr10 102822830 102822830 1 + A T LUAD 102822850 + 102822830 102822870 41 ACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATGG TCTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATGG < 41bp 1 0.568558975970423 1 0.135788172483444 experiment 0.862882048059153 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822850 chr10:102822830 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_28460 0 0 0 0 1 nucleus 1 0.500231643586738 1 0.999536712826523 hm5C_site_28807 DeepMRMD:1;iRNA_m5C:0.999536712826523 28808 chr4 153896290 153896290 1 + C T LUAD 153896278 + 153896258 153896298 41 GGGGGGCCAGGAGGAGGCCCCCAACCCACCCTCAGCACAGG GGGGGGCCAGGAGGAGGCCCCCAACCCACCCTTAGCACAGG < 41bp 1 0.0823958006255918 1 0.371177017688751 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896278 chr4:153896290 nonsynonymous SNV 0.001 0 33 hm5C_associated_SNPs_28461 0 0 0 0 0 Nucleus 1 0.50023164393903 1 0.999536712121941 hm5C_site_28808 DeepMRMD:1;iRNA_m5C:0.999536712121941 28809 chr4 153896290 153896290 1 + C T LUAD 153896279 + 153896259 153896299 41 GGGGGCCAGGAGGAGGCCCCCAACCCACCCTCAGCACAGGC GGGGGCCAGGAGGAGGCCCCCAACCCACCCTTAGCACAGGC < 41bp 1 0.284078365144706 1 0.238144278526306 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896279 chr4:153896290 nonsynonymous SNV 0.001 0 32 hm5C_associated_SNPs_28462 0 0 0 0 0 Nucleus 1 0.500231645979967 1 0.999536708040066 hm5C_site_28809 DeepMRMD:1;iRNA_m5C:0.999536708040066 28810 chr17 39978051 39978051 1 + C A LUAD 39978062 + 39978042 39978082 41 CAAGGATGGCGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT CAAGGATGGAGAGGTCCCTCCGGAGGAGGTGGGTGAAGGTT < 41bp 1 0.550169301807234 1 0.787547945976257 experiment 0.899661396385532 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39978062 chr17:39978051 synonymous SNV . 0 10 hm5C_associated_SNPs_28463 0 0 1 0 1 Nucleus 1 0.500231643918264 0.424904108047486 0.999536712163471 hm5C_site_28810 DeepMRMD:0.424904108047486;iRNA_m5C:0.999536712163471 28811 chr5 167943881 167943881 1 + C G LUAD 167943878 + 167943858 167943898 41 CATAACCGGTTGAATGACTACATCTTCTCCTTTGACAAAAT CATAACCGGTTGAATGACTACATGTTCTCCTTTGACAAAAT < 41bp 1 0.298229836589709 1 0.063340961933136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943878 chr5:167943881 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_28464 0 0 1 0 2 Nucleus 1 0.500231656627571 1 0.999536686744857 hm5C_site_28811 DeepMRMD:1;iRNA_m5C:0.999536686744857 28812 chr1 235600748 235600748 1 + A T LUAD 235600742 + 235600722 235600762 41 AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGC AAGCAGAGACGGCGCGACTACTCATTTTCGCCAGCATTGGC < 41bp 1 0.611078779167061 1 0.0917857885360718 experiment 0.777842441665877 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235600742 chr1:235600748 nonsynonymous SNV 0.003 4 27 hm5C_associated_SNPs_28465 0 0 1 0 0 chromatin 1 0.500231440569255 1 0.999537118861489 hm5C_site_28812 DeepMRMD:1;iRNA_m5C:0.999537118861489 28813 chr4 57891066 57891066 1 + G T LUAD 57891056 + 57891036 57891076 41 CTTTTTTTTTTAAAAGGTATCGGCTAACAAGGGTGAAATTG CTTTTTTTTTTAAAAGGTATCGGCTAACAATGGTGAAATTG < 41bp 1 0.362175025144119 1 0.418382048606873 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57891056 chr4:57891066 nonsynonymous SNV 0.998 0 31 hm5C_associated_SNPs_28466 0 0 1 0 2 Nucleus 1 0.500231643946271 1 0.999536712107459 hm5C_site_28813 DeepMRMD:1;iRNA_m5C:0.999536712107459 28814 chr22 38046636 38046636 1 + C T LUAD 38046649 + 38046629 38046669 41 CTTCCGTCCACTGCCGTGCCCACCCCAGCCACCACCCCGGC CTTCCGTTCACTGCCGTGCCCACCCCAGCCACCACCCCGGC < 41bp 1 0.33079988068799 1 0.0234816670417786 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046649 chr22:38046636 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_28467 0 0 1 5 1 cytosol 1 0.500231298258208 1 0.999537403483585 hm5C_site_28814 DeepMRMD:1;iRNA_m5C:0.999537403483585 28815 chr17 36873066 36873066 1 + G T LUAD 36873079 + 36873059 36873099 41 CCCAGCTGCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCT CCCAGCTTCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCT < 41bp 1 0.193167899283911 1 0.145240485668182 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873079 chr17:36873066 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_28468 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_28815 DeepMRMD:1;iRNA_m5C:0.999536712157815 28816 chr17 36873066 36873066 1 + G T LUAD 36873080 + 36873060 36873100 41 CCAGCTGCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTT CCAGCTTCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTT < 41bp 1 0.299206128644994 1 0.125735938549042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873080 chr17:36873066 nonsynonymous SNV 0.000 0 7 hm5C_associated_SNPs_28469 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_28816 DeepMRMD:1;iRNA_m5C:0.999536712157816 28817 chr17 36873066 36873066 1 + G T LUAD 36873085 + 36873065 36873105 41 TGCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCG TTCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCG < 41bp 1 0.116936172695012 1 0.0554032921791077 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873085 chr17:36873066 nonsynonymous SNV 0.000 0 2 hm5C_associated_SNPs_28470 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_28817 DeepMRMD:1;iRNA_m5C:0.999536712157815 28818 chr17 36873066 36873066 1 + G T LUAD 36873086 + 36873066 36873106 41 GCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCGC TCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCGC < 41bp 1 0.102840800935674 1 0.118966937065125 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873086 chr17:36873066 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_28471 0 0 0 0 0 chromatin 1 0.500231879666133 1 0.999536240667733 hm5C_site_28818 DeepMRMD:1;iRNA_m5C:0.999536240667733 28819 chrX 54838629 54838629 1 + C A LUAD 54838641 + 54838621 54838661 41 AGAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC AGAATGACAACTTGTACATTCTTCTCAGCACCTTAGAGCCC < 41bp 1 0.124250139790139 1 0.0473296940326691 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838641 chrX:54838629 nonsynonymous SNV 0.905 0 9 hm5C_associated_SNPs_28472 0 0 1 0 2 chromatin 1 0.500236084721026 1 0.999527830557948 hm5C_site_28819 DeepMRMD:1;iRNA_m5C:0.999527830557948 28820 chr18 8819054 8819054 1 + C T LUAD 8819061 + 8819041 8819081 41 CCAGGGAAGCCTCCGCATGCCCCGTCCAGTGGCCATGTGGC CCAGGGAAGCCTCTGCATGCCCCGTCCAGTGGCCATGTGGC < 41bp 1 0.17362122048639 1 0.0981238782405853 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8819061 chr18:8819054 nonsynonymous SNV 0.002 2 14 hm5C_associated_SNPs_28473 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28820 DeepMRMD:1;iRNA_m5C:0.999536712157815 28821 chr5 149206254 149206254 1 + G T LUAD 149206241 + 149206221 149206261 41 CCCTCCTCACTCCAGATTGACAGTGAGAATGAGGCCCTCCT CCCTCCTCACTCCAGATTGACAGTGAGAATGAGTCCCTCCT < 41bp 1 0.250907135809206 1 0.130060762166977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149206241 chr5:149206254 nonsynonymous SNV 0.998 4 34 hm5C_associated_SNPs_28474 0 0 1 0 1 chromatin 1 0.500231643921098 1 0.999536712157805 hm5C_site_28821 DeepMRMD:1;iRNA_m5C:0.999536712157805 28822 chr11 61404715 61404715 1 + C G LUAD 61404700 + 61404680 61404720 41 ATGCTCAACATCTCCCCCTTCTCCTCTGGGCTGGTCATCCA ATGCTCAACATCTCCCCCTTCTCCTCTGGGCTGGTGATCCA < 41bp 1 0.462580498626999 1 0.805577874183655 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404700 chr11:61404715 . . 0 36 hm5C_associated_SNPs_28475 0 0 1 0 0 unknown 1 0.500231646250921 0.38884425163269 0.999536707498157 hm5C_site_28822 DeepMRMD:0.38884425163269;iRNA_m5C:0.999536707498157 28823 chr11 61404715 61404715 1 + C G LUAD 61404702 + 61404682 61404722 41 GCTCAACATCTCCCCCTTCTCCTCTGGGCTGGTCATCCAGC GCTCAACATCTCCCCCTTCTCCTCTGGGCTGGTGATCCAGC < 41bp 1 0.166991154115404 1 0.186785787343979 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404702 chr11:61404715 . . 0 34 hm5C_associated_SNPs_28476 0 0 1 0 0 unknown 1 0.500231643921089 1 0.999536712157822 hm5C_site_28823 DeepMRMD:1;iRNA_m5C:0.999536712157822 28824 chr6 42561937 42561937 1 + A T LUAD 42561936 + 42561916 42561956 41 ATTTTTTTCCAAGATGACAACATCAGGAGGTGGAGGTTTCT ATTTTTTTCCAAGATGACAACTTCAGGAGGTGGAGGTTTCT < 41bp 1 0.167420558811297 1 0.593618035316467 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR2 ENSG00000024048 CDS Human protein_coding chr6:42561936 chr6:42561937 synonymous SNV . 0 22 hm5C_associated_SNPs_28477 0 0 1 0 1 Cytosol 1 0.500231643921092 0.812763929367066 0.999536712157816 hm5C_site_28824 DeepMRMD:0.812763929367066;iRNA_m5C:0.999536712157816 28825 chr5 154179525 154179525 1 + G C LUAD 154179534 + 154179514 154179554 41 AGGGCCTGTCTGCCAGCCTGCCTGACCTGGATTCTGAGAAC AGGGCCTGTCTCCCAGCCTGCCTGACCTGGATTCTGAGAAC < 41bp 1 0.223487172651887 1 0.046910434961319 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154179534 chr5:154179525 nonsynonymous SNV 0.998 2 12 hm5C_associated_SNPs_28478 0 0 1 0 1 Cytosol 1 0.500231643968369 1 0.999536712063261 hm5C_site_28825 DeepMRMD:1;iRNA_m5C:0.999536712063261 28826 chr10 95660993 95660993 1 + G T LUAD 95660981 + 95660961 95661001 41 CTGTATTAGGAGAGTGGAGTCTGCCTTACTGTGGGTTGGAC CTGTATTAGGAGAGTGGAGTCTGCCTTACTGTTGGTTGGAC < 41bp 1 0.535298573330731 1 0.310320854187012 experiment 0.929402853338538 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC35G1 ENSG00000176273 CDS Human protein_coding chr10:95660981 chr10:95660993 nonsynonymous SNV 0.987 4 33 hm5C_associated_SNPs_28479 0 0 1 0 0 exosome 1 0.500231643921185 1 0.99953671215763 hm5C_site_28826 DeepMRMD:1;iRNA_m5C:0.99953671215763 28827 chr3 170110112 170110112 1 + C G LUAD 170110100 + 170110080 170110120 41 GAGGCCGATAGGCAAGAACTCCAAGATGAACTCAGACAGGA GAGGCCGATAGGCAAGAACTCCAAGATGAACTGAGACAGGA < 41bp 1 0.459722361207837 1 0.422502368688583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110100 chr3:170110112 synonymous SNV . 0 33 hm5C_associated_SNPs_28480 0 0 1 0 1 Nucleus 1 0.500231643752058 1 0.999536712495883 hm5C_site_28827 DeepMRMD:1;iRNA_m5C:0.999536712495883 28828 chr3 170110112 170110112 1 + C G LUAD 170110110 + 170110090 170110130 41 GGCAAGAACTCCAAGATGAACTCAGACAGGAACGGGAAGCA GGCAAGAACTCCAAGATGAACTGAGACAGGAACGGGAAGCA < 41bp 1 0.649070908955992 1 0.439980179071426 experiment 0.701858182088015 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110110 chr3:170110112 synonymous SNV . 0 23 hm5C_associated_SNPs_28481 0 0 1 0 1 Nucleus 1 0.500231643921437 1 0.999536712157126 hm5C_site_28828 DeepMRMD:1;iRNA_m5C:0.999536712157126 28829 chr2 238005469 238005469 1 + A T LUAD 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCTGGGGCCCTGGATGTTTCCTTTAACAA < 41bp 1 0.104739782241984 1 0.195703327655792 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005469 synonymous SNV . 0 15 hm5C_associated_SNPs_28482 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28829 DeepMRMD:1;iRNA_m5C:0.999536712157815 28830 chr19 14512314 14512314 1 + G C LUAD 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAAGATATCATCAGGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.275753446702235 1 0.0515044629573822 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512314 nonsynonymous SNV 0.002 1 15 hm5C_associated_SNPs_28483 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28830 DeepMRMD:1;iRNA_m5C:0.999536712157815 28831 chr1 109643148 109643148 1 + G T LUAD 109643149 + 109643129 109643169 41 CCGGAGCTGGCCCTGCGGGGCCCGGCGCTCAGAAGTGATGA CCGGAGCTGGCCCTGCGGGTCCCGGCGCTCAGAAGTGATGA < 41bp 1 0.554942641315839 1 0.110885202884674 experiment 0.890114717368322 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643149 chr1:109643148 . . 0 20 hm5C_associated_SNPs_28485 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28831 DeepMRMD:1;iRNA_m5C:0.999536712157815 28832 chr1 109643148 109643148 1 + G T LUAD 109643150 + 109643130 109643170 41 CGGAGCTGGCCCTGCGGGGCCCGGCGCTCAGAAGTGATGAA CGGAGCTGGCCCTGCGGGTCCCGGCGCTCAGAAGTGATGAA < 41bp 1 0.488490427884284 1 0.326938807964325 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643150 chr1:109643148 . . 0 19 hm5C_associated_SNPs_28486 0 0 1 2 0 unknown 1 0.500231644471172 1 0.999536711057657 hm5C_site_28832 DeepMRMD:1;iRNA_m5C:0.999536711057657 28833 chr1 109643148 109643148 1 + G T LUAD 109643154 + 109643134 109643174 41 GCTGGCCCTGCGGGGCCCGGCGCTCAGAAGTGATGAATTGA GCTGGCCCTGCGGGTCCCGGCGCTCAGAAGTGATGAATTGA < 41bp 1 0.2511147147205 1 0.259146451950073 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643154 chr1:109643148 . . 0 15 hm5C_associated_SNPs_28487 0 0 1 2 0 unknown 1 0.500231798480838 1 0.999536403038324 hm5C_site_28833 DeepMRMD:1;iRNA_m5C:0.999536403038324 28834 chr1 109643148 109643148 1 + G T LUAD 109643156 + 109643136 109643176 41 TGGCCCTGCGGGGCCCGGCGCTCAGAAGTGATGAATTGATC TGGCCCTGCGGGTCCCGGCGCTCAGAAGTGATGAATTGATC < 41bp 1 0.459126715436587 1 0.182366460561752 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643156 chr1:109643148 . . 0 13 hm5C_associated_SNPs_28488 0 0 1 2 0 unknown 1 0.500231643921153 1 0.999536712157693 hm5C_site_28834 DeepMRMD:1;iRNA_m5C:0.999536712157693 28835 chr3 66431236 66431236 1 + A G LUAD 66431223 - 66431203 66431243 41 TGGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGCCT TGGACTGCTACTCCAGGGGACAAGCCTTCCACCCCCAGCCT < 41bp 1 0.190507149032524 1 0.188139915466309 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66431223 chr3:66431236 synonymous SNV . 0 8 hm5C_associated_SNPs_28489 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28835 DeepMRMD:1;iRNA_m5C:0.999536712157815 28836 chr6 44107279 44107279 1 + G T LUAD 44107298 + 44107278 44107318 41 TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG TTCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG < 41bp 1 0.347662266708723 1 0.145701169967651 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107298 chr6:44107279 synonymous SNV . 0 2 hm5C_associated_SNPs_28491 0 0 1 0 2 Ribosome 1 0.500236510831144 1 0.999526978337713 hm5C_site_28836 DeepMRMD:1;iRNA_m5C:0.999526978337713 28837 chr6 1391291 1391291 1 + G C LUAD 1391304 + 1391284 1391324 41 CACTCCAGCATGTCCTCCTACTCGCTGGAGCAGAGCTACTT CACTCCACCATGTCCTCCTACTCGCTGGAGCAGAGCTACTT < 41bp 1 0.391617936675145 1 0.284998804330826 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1391304 chr6:1391291 nonsynonymous SNV 0.992 2 8 hm5C_associated_SNPs_28492 0 0 1 0 1 exosome 1 0.500231643921074 1 0.999536712157851 hm5C_site_28837 DeepMRMD:1;iRNA_m5C:0.999536712157851 28838 chr17 61489411 61489411 1 + G A LUAD 61489416 + 61489396 61489436 41 ACGTTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTG ACGTTGACTACAGTGAAATGCGCCCTTTGGATAGGGCAGTG < 41bp 1 0.325614840355622 1 0.132415175437927 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61489416 chr17:61489411 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_28493 0 0 0 0 2 Cytosol 1 0.500231642592209 1 0.999536714815583 hm5C_site_28838 DeepMRMD:1;iRNA_m5C:0.999536714815583 28839 chrX 105891594 105891594 1 + G C LUAD 105891593 + 105891573 105891613 41 ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCA ACAAACAAAGGGAATTAAACCCGGCATGCCAAGCATCTTCA < 41bp 1 0.408096808949941 1 0.408377289772034 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891593 chrX:105891594 synonymous SNV . 0 22 hm5C_associated_SNPs_28494 0 0 0 0 1 nucleus 1 0.500231663622644 1 0.999536672754712 hm5C_site_28839 DeepMRMD:1;iRNA_m5C:0.999536672754712 28840 chr1 22336215 22336215 1 + C A LUAD 22336203 + 22336183 22336223 41 CTCTGACGGTTCCAGGGTGACTCTGGAGGACCCCTCAACTG CTCTGACGGTTCCAGGGTGACTCTGGAGGACCACTCAACTG < 41bp 1 0.671638633910799 1 0.0870119035243988 experiment 0.656722732178402 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336203 chr1:22336215 synonymous SNV . 0 33 hm5C_associated_SNPs_28495 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643091127 1 0.999536713817745 hm5C_site_28840 DeepMRMD:1;iRNA_m5C:0.999536713817745 28841 chr9 127561676 127561676 1 + A T LUAD 127561684 + 127561664 127561704 41 TGCTGGGCATCAAGAAGGAGCTGTCCCGCCTGGGCCTCCAG TGCTGGGCATCATGAAGGAGCTGTCCCGCCTGGGCCTCCAG < 41bp 1 0.0958195772772045 1 0.105729818344116 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OLFML2A ENSG00000185585 CDS Human protein_coding chr9:127561684 chr9:127561676 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_28496 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28841 DeepMRMD:1;iRNA_m5C:0.999536712157815 28842 chr1 150131394 150131394 1 + G A LUAD 150131381 + 150131361 150131401 41 TGAGGAACCCCCAACCCCTGCCCTCCCCAACCCGGGGCAGC TGAGGAACCCCCAACCCCTGCCCTCCCCAACCCAGGGCAGC < 41bp 1 0.0459181398308893 1 0.054751992225647 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHO1 ENSG00000023902 CDS Human protein_coding chr1:150131381 chr1:150131394 synonymous SNV . 0 34 hm5C_associated_SNPs_28497 0 0 0 0 0 Ribosome 1 0.500231641689038 1 0.999536716621924 hm5C_site_28842 DeepMRMD:1;iRNA_m5C:0.999536716621924 28843 chr4 48384741 48384741 1 + A C LUAD 48384732 + 48384712 48384752 41 TATGCATCATGCAGTATACCCTGCTGTTAACAGGTTTTCAC TATGCATCATGCAGTATACCCTGCTGTTACCAGGTTTTCAC < 41bp 1 0.650838144254101 1 0.0513534545898438 experiment 0.698323711491798 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48384732 chr4:48384741 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_28498 0 0 1 0 0 Cytosol 1 0.500231643913912 1 0.999536712172176 hm5C_site_28843 DeepMRMD:1;iRNA_m5C:0.999536712172176 28844 chrX 23685884 23685884 1 + G T LUAD 23685882 + 23685862 23685902 41 GTGTACCCGGGAGAGGCATCCCGGGTATCGGTCGCCGACCA GTGTACCCGGGAGAGGCATCCCTGGTATCGGTCGCCGACCA < 41bp 1 0.591912993927151 1 0.313383519649506 experiment 0.816174012145698 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23685882 chrX:23685884 nonsynonymous SNV 0.849 2 23 hm5C_associated_SNPs_28500 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920172 1 0.999536712159656 hm5C_site_28844 DeepMRMD:1;iRNA_m5C:0.999536712159656 28845 chr4 41652437 41652437 1 + G C LUAD 41652424 + 41652404 41652444 41 TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGT TTATAGGTAGACGGGAAAGTCAGTGTGAATGGACAGACGGT < 41bp 1 0.356869877578743 1 0.383950710296631 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41652424 chr4:41652437 nonsynonymous SNV 0.835 4 34 hm5C_associated_SNPs_28501 0 0 1 0 1 Nucleus 1 0.500231643940468 1 0.999536712119065 hm5C_site_28845 DeepMRMD:1;iRNA_m5C:0.999536712119065 28846 chr7 150840470 150840470 1 + G A LUSC 150840477 + 150840457 150840497 41 AGTATGAACAGAAGCTCTTCCTGGCCCCACTGCCAAGCTCA AGTATGAACAGAAACTCTTCCTGGCCCCACTGCCAAGCTCA < 41bp 1 0.308845139857643 1 0.133706599473953 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150840477 chr7:150840470 synonymous SNV . 0 14 hm5C_associated_SNPs_28502 0 0 1 0 1 Cytosol 1 0.500231521135891 1 0.999536957728218 hm5C_site_28846 DeepMRMD:1;iRNA_m5C:0.999536957728218 28847 chr2 232576121 232576121 1 + G T LUSC 232576110 + 232576090 232576130 41 GGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTG GGCAGAAAATGGAAGAGACGCCCCTGCTAACTGGAATGCTG < 41bp 1 0.246879195223357 1 0.0528959929943085 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576110 chr2:232576121 nonsynonymous SNV 0.995 3 32 hm5C_associated_SNPs_28503 0 0 1 0 2 Ribosome 1 0.500231674314939 1 0.999536651370121 hm5C_site_28847 DeepMRMD:1;iRNA_m5C:0.999536651370121 28848 chr2 232576121 232576121 1 + G T LUSC 232576128 + 232576108 232576148 41 CGCCCCTGCTAACGGGAATGCTGTGAGTGTCTGCTTTGCTC CGCCCCTGCTAACTGGAATGCTGTGAGTGTCTGCTTTGCTC < 41bp 1 0.497747715388458 1 0.132533133029938 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576128 chr2:232576121 nonsynonymous SNV 0.995 3 14 hm5C_associated_SNPs_28504 0 0 1 0 2 Ribosome 1 0.500231524583347 1 0.999536950833307 hm5C_site_28848 DeepMRMD:1;iRNA_m5C:0.999536950833307 28849 chr8 77620157 77620157 1 + G T LUSC 77620172 + 77620152 77620192 41 TTGAAGTGTATTGCCATTGGCAACCCTGTTCACCTAAAATG TTGAATTGTATTGCCATTGGCAACCCTGTTCACCTAAAATG < 41bp 1 0.0793398528978891 1 0.0610237717628479 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77620172 chr8:77620157 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_28505 0 0 1 0 0 Ribosome 1 0.500231642045725 1 0.999536715908551 hm5C_site_28849 DeepMRMD:1;iRNA_m5C:0.999536715908551 28850 chr21 34925003 34925003 1 + A G LUSC 34925019 + 34924999 34925039 41 CCCAACAATGCCACCGTTGCCACCTGAGGAGCCACCAATGA CCCAGCAATGCCACCGTTGCCACCTGAGGAGCCACCAATGA < 41bp 1 0.627501106378248 1 0.422674149274826 experiment 0.744997787243505 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SON ENSG00000159140 CDS Human protein_coding chr21:34925019 chr21:34925003 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_28506 0 0 1 0 0 Nucleus 1 0.500231652704278 1 0.999536694591443 hm5C_site_28850 DeepMRMD:1;iRNA_m5C:0.999536694591443 28851 chr2 198571408 198571408 1 + A C LUSC 198571398 + 198571378 198571418 41 CCTTCTGAGACCTACCCAGCCTTCTGCACTACCTGCTTCCC CCTTCTGAGACCTACCCAGCCTTCTGCACTCCCTGCTTCCC < 41bp 1 0.226298621122623 1 0.0265955924987793 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARS2 ENSG00000247626 CDS Human protein_coding chr2:198571398 chr2:198571408 nonsynonymous SNV 0.664 0 31 hm5C_associated_SNPs_28507 0 0 1 0 0 Ribosome 1 0.500231643918678 1 0.999536712162644 hm5C_site_28851 DeepMRMD:1;iRNA_m5C:0.999536712162644 28852 chr20 19981329 19981329 1 + A G LUSC 19981314 + 19981294 19981334 41 GTTGCACAGGAAAGACCCTCCTTGTGAGACCTTACATCACC GTTGCACAGGAAAGACCCTCCTTGTGAGACCTTACGTCACC < 41bp 1 0.419327077388549 1 0.298429429531097 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19981314 chr20:19981329 nonsynonymous SNV 0.137 0 36 hm5C_associated_SNPs_28508 0 0 1 0 1 Nucleus 1 0.500231643912789 1 0.999536712174422 hm5C_site_28852 DeepMRMD:1;iRNA_m5C:0.999536712174422 28853 chr20 37580939 37580939 1 + G A LUSC 37580957 + 37580937 37580977 41 TGGGCACCCCCCACCTGGAACTGTACTTGAGTGACTCACTT TGAGCACCCCCCACCTGGAACTGTACTTGAGTGACTCACTT < 41bp 1 0.31632044541041 1 0.0780228674411774 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37580957 chr20:37580939 nonsynonymous SNV 0.844 0 3 hm5C_associated_SNPs_28509 0 0 1 0 0 Ribosome 1 0.500231643912864 1 0.999536712174272 hm5C_site_28853 DeepMRMD:1;iRNA_m5C:0.999536712174272 28854 chr1 874711 874711 1 + C G LUSC 874694 + 874674 874714 41 GGAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCC GGAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACGGCC < 41bp 1 0.643739838872761 1 0.171914786100388 experiment 0.712520322254478 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874694 chr1:874711 nonsynonymous SNV 0.194 1 38 hm5C_associated_SNPs_28510 0 0 1 0 2 nucleus 1 0.500231643920954 1 0.999536712158092 hm5C_site_28854 DeepMRMD:1;iRNA_m5C:0.999536712158092 28855 chr1 27190144 27190144 1 + C T LUSC 27190127 + 27190107 27190147 41 CCACCGGTGACGACAAGAAGCGCATCATTGACTCAGCCCGG CCACCGGTGACGACAAGAAGCGCATCATTGACTCAGCTCGG < 41bp 1 0.330310585374755 1 0.358684062957764 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFN ENSG00000175793 CDS Human protein_coding chr1:27190127 chr1:27190144 synonymous SNV . 0 38 hm5C_associated_SNPs_28512 0 0 0 0 0 Ribosome 1 0.500188580674808 1 0.999622838650385 hm5C_site_28855 DeepMRMD:1;iRNA_m5C:0.999622838650385 28856 chr7 73944172 73944172 1 + G A LUSC 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATCCCCTTCAAGCACCCCTGCACTT < 41bp 1 0.0238269428424223 1 0.155773311853409 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944172 nonsynonymous SNV 0.996 3 30 hm5C_associated_SNPs_28513 0 0 1 0 1 Nucleus 1 0.500231643885706 1 0.999536712228589 hm5C_site_28856 DeepMRMD:1;iRNA_m5C:0.999536712228589 28857 chr6 31929803 31929803 1 + A G LUSC 31929807 + 31929787 31929827 41 TGTGGCTGAATATGCCATTGCCCTGGCCCAGAAACACATGA TGTGGCTGAATATGCCGTTGCCCTGGCCCAGAAACACATGA < 41bp 1 0.155751484266114 1 0.0623363554477692 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929807 chr6:31929803 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_28514 0 0 0 0 1 chromatin 1 0.500231643703631 1 0.999536712592737 hm5C_site_28857 DeepMRMD:1;iRNA_m5C:0.999536712592737 28858 chr19 11096052 11096052 1 + C T LUSC 11096032 + 11096012 11096052 41 ATGGGGATGCGGTCAGGGGGCCATGCTGGGATGGGGCCCCC ATGGGGATGCGGTCAGGGGGCCATGCTGGGATGGGGCCCCT < 41bp 1 0.254540750603923 1 0.385194301605225 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11096032 chr19:11096052 nonsynonymous SNV 0.808 5 41 hm5C_associated_SNPs_28515 1 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28858 DeepMRMD:1;iRNA_m5C:0.999536712157815 Rhabdoid tumor predisposition syndrome 2 Rhabdoid tumor predisposition syndrome 2 28859 chr17 37359337 37359337 1 + G A LUSC 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTAAA < 41bp 1 0.361846223013669 1 0.0980159640312195 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359337 nonsynonymous SNV 0.444 2 39 hm5C_associated_SNPs_28516 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_28859 DeepMRMD:1;iRNA_m5C:0.999536712157815 28860 chr17 37359337 37359337 1 + G A LUSC 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTAAATCT < 41bp 1 0.477728610604511 1 0.143285661935806 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359337 nonsynonymous SNV 0.444 2 36 hm5C_associated_SNPs_28517 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_28860 DeepMRMD:1;iRNA_m5C:0.999536712157815 28861 chr17 37359337 37359337 1 + G A LUSC 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAGAAGATACCGTAAATCTAAGAAGATCGA < 41bp 1 0.341357975422268 1 0.190246552228928 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359337 nonsynonymous SNV 0.444 2 25 hm5C_associated_SNPs_28518 0 0 1 0 2 chromatin 1 0.500231644559785 1 0.999536710880431 hm5C_site_28861 DeepMRMD:1;iRNA_m5C:0.999536710880431 28862 chr17 37359337 37359337 1 + G A LUSC 37359334 + 37359314 37359354 41 GCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGAT GCCGGCTGCTCAGAAGATACCGTAAATCTAAGAAGATCGAT < 41bp 1 0.552293648982667 1 0.351287126541138 experiment 0.895412702034667 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359334 chr17:37359337 nonsynonymous SNV 0.444 2 24 hm5C_associated_SNPs_28519 0 0 1 0 2 chromatin 1 0.500231640845187 1 0.999536718309625 hm5C_site_28862 DeepMRMD:1;iRNA_m5C:0.999536718309625 28863 chr19 52714673 52714673 1 + G A LUSC 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG CACACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG < 41bp 1 0.418916991265036 1 0.0607351064682007 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714673 nonsynonymous SNV 0.985 4 2 hm5C_associated_SNPs_28520 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_28863 DeepMRMD:1;iRNA_m5C:0.999536712157815 28864 chr10 121677443 121677443 1 + A T LUSC 121677432 + 121677412 121677452 41 CTAGATATTTTATTTTATAACAGCCCCACCTACTGTCAGAC CTAGATATTTTATTTTATAACAGCCCCACCTTCTGTCAGAC < 41bp 1 0.240460484843486 1 0.190818548202515 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121677432 chr10:121677443 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_28521 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_28864 DeepMRMD:1;iRNA_m5C:0.999536712157814 28865 chr10 118314941 118314941 1 + C G LUSC 118314925 + 118314905 118314945 41 GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCCAAA GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTGCAAA < 41bp 1 0.111150420270601 1 0.0676183104515076 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314925 chr10:118314941 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_28523 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28865 DeepMRMD:1;iRNA_m5C:0.999536712157815 28866 chr7 43591845 43591845 1 + G A LUSC 43591843 + 43591823 43591863 41 TGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGC TGTAGACTCGAGGCTGGTGTCCATGTTTGATGCCAGGGAGC < 41bp 1 0.110727950914722 1 0.311273515224457 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43591843 chr7:43591845 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_28524 0 0 0 0 2 Cytosol 1 0.50022144711903 1 0.99955710576194 hm5C_site_28866 DeepMRMD:1;iRNA_m5C:0.99955710576194 28867 chr16 83932989 83932989 1 + G C LUSC 83932994 + 83932974 83933014 41 CGGTGGGCTGGCCGAGACGGCCCAGCGGGCCGAACTGCTGG CGGTGGGCTGGCCGACACGGCCCAGCGGGCCGAACTGCTGG < 41bp 1 0.427683916470517 1 0.194747805595398 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MLYCD ENSG00000103150 CDS Human protein_coding chr16:83932994 chr16:83932989 nonsynonymous SNV 0.970 1 16 hm5C_associated_SNPs_28525 0 0 1 0 0 nucleolus 1 0.500231643919273 1 0.999536712161454 hm5C_site_28867 DeepMRMD:1;iRNA_m5C:0.999536712161454 28868 chr16 83932989 83932989 1 + G C LUSC 83932995 + 83932975 83933015 41 GGTGGGCTGGCCGAGACGGCCCAGCGGGCCGAACTGCTGGG GGTGGGCTGGCCGACACGGCCCAGCGGGCCGAACTGCTGGG < 41bp 1 0.498599044046116 1 0.318159699440002 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MLYCD ENSG00000103150 CDS Human protein_coding chr16:83932995 chr16:83932989 nonsynonymous SNV 0.970 1 15 hm5C_associated_SNPs_28526 0 0 1 0 0 nucleolus 1 0.500231643868879 1 0.999536712262242 hm5C_site_28868 DeepMRMD:1;iRNA_m5C:0.999536712262242 28869 chr19 50881892 50881892 1 + G A LUSC 50881902 + 50881882 50881922 41 CTCAGCCTCTGGGCCTGGGGCTTCCCCTGGTGGATCTGAGG CTCAGCCTCTAGGCCTGGGGCTTCCCCTGGTGGATCTGAGG < 41bp 1 0.0793921183781115 1 0.0859507024288177 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881902 chr19:50881892 nonsynonymous SNV 0.106 1 11 hm5C_associated_SNPs_28528 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28869 DeepMRMD:1;iRNA_m5C:0.999536712157815 28870 chr12 70760802 70760802 1 + T C LUSC 70760809 + 70760789 70760829 41 CTGAGTCCAACTCTAGGGCGCTGCTGCACAGCGACGAGCAC CTGAGTCCAACTCCAGGGCGCTGCTGCACAGCGACGAGCAC < 41bp 1 0.347286094408183 1 0.0375682711601257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KCNMB4 ENSG00000135643 CDS Human protein_coding chr12:70760809 chr12:70760802 synonymous SNV . 0 14 hm5C_associated_SNPs_28529 0 0 1 0 1 Cytosol 1 0.500231643833911 1 0.999536712332178 hm5C_site_28870 DeepMRMD:1;iRNA_m5C:0.999536712332178 28871 chr13 115090576 115090576 1 + G A LUSC 115090577 + 115090557 115090597 41 CCAGTGTCTCCAGAGCTTCGCAAACCCGGCCCACCACTATC CCAGTGTCTCCAGAGCTTCACAAACCCGGCCCACCACTATC < 41bp 1 0.278200244431913 1 0.142058551311493 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115090577 chr13:115090576 nonsynonymous SNV 0.990 3 20 hm5C_associated_SNPs_28530 0 0 1 0 0 nucleus 1 0.500231657107112 1 0.999536685785777 hm5C_site_28871 DeepMRMD:1;iRNA_m5C:0.999536685785777 28872 chr19 48259067 48259067 1 + C G LUSC 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAGCTCGGAGCTGACAGACTCGCTGAGGACCCTGAAGGTGC < 41bp 1 0.497268379499347 1 0.119084984064102 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259067 synonymous SNV . 0 25 hm5C_associated_SNPs_28531 0 0 1 0 2 unknown 1 0.500231643920143 1 0.999536712159715 hm5C_site_28872 DeepMRMD:1;iRNA_m5C:0.999536712159715 28873 chr3 184040733 184040733 1 + G T LUSC 184040721 + 184040701 184040741 41 CCAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA CCAGAGGGATTGCCACATATCAGTGACGTGGTTCTGGACAA < 41bp 1 0.687058142824294 1 0.332542181015015 experiment 0.625883714351412 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184040721 chr3:184040733 synonymous SNV . 0 33 hm5C_associated_SNPs_28532 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_28873 DeepMRMD:1;iRNA_m5C:0.999536712157816 28874 chr16 67918045 67918045 1 + C T LUSC 67918061 + 67918041 67918081 41 GCCTCCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA GCCTTCCTTAGCTGCTAAGCCTGCCTTGCCCAGGGGTGGGA < 41bp 1 0.439431358448748 1 0.0885667502880096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67918061 chr16:67918045 synonymous SNV . 0 5 hm5C_associated_SNPs_28533 0 0 1 8 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28874 DeepMRMD:1;iRNA_m5C:0.999536712157815 28875 chr6 43189438 43189438 1 + A T LUSC 43189429 + 43189409 43189449 41 AGCTTCCTCCATAGCATGACCTGTGCCAAATGTAACCATGG AGCTTCCTCCATAGCATGACCTGTGCCAATTGTAACCATGG < 41bp 1 0.133680180024681 1 0.110608756542206 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43189429 chr6:43189438 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_28534 0 0 0 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_28875 DeepMRMD:1;iRNA_m5C:0.999536712157815 28876 chr11 810332 810332 1 + A T LUSC 810346 + 810326 810366 41 GTATCGAGGCGGACGACGACCGGCTCAACAAGGTAGCGGCC GTATCGTGGCGGACGACGACCGGCTCAACAAGGTAGCGGCC < 41bp 1 0.693284794504407 1 0.445269465446472 experiment 0.613430410991185 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPLP2 ENSG00000177600 CDS Human protein_coding chr11:810346 chr11:810332 nonsynonymous SNV 0.997 4 7 hm5C_associated_SNPs_28536 0 0 1 0 2 Ribosome 1 0.500231644078257 1 0.999536711843486 hm5C_site_28876 DeepMRMD:1;iRNA_m5C:0.999536711843486 28877 chr16 31927618 31927618 1 + C G LUSC 31927630 + 31927610 31927650 41 AAGACATACTGGAGAGAGACCCTACAAATGTGATGAATGTG AAGACATAGTGGAGAGAGACCCTACAAATGTGATGAATGTG < 41bp 1 0.0364209738148508 1 0.20202225446701 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF267 ENSG00000185947 CDS Human protein_coding chr16:31927630 chr16:31927618 nonsynonymous SNV 0.185 3 9 hm5C_associated_SNPs_28538 0 0 1 0 0 chromatin 1 0.500231643920845 1 0.99953671215831 hm5C_site_28877 DeepMRMD:1;iRNA_m5C:0.99953671215831 28878 chr15 52353627 52353627 1 + C G LUSC 52353617 + 52353597 52353637 41 ATGGATGAGCCAATTTCAAGCCATCCTTTTCATATTGAAGA ATGGATGAGCCAATTTCAAGCCATCCTTTTGATATTGAAGA < 41bp 1 0.0340774388393299 1 0.201988518238068 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52353617 chr15:52353627 nonsynonymous SNV 0.998 1 31 hm5C_associated_SNPs_28539 0 0 1 0 1 Ribosome 1 0.500231643951789 1 0.999536712096421 hm5C_site_28878 DeepMRMD:1;iRNA_m5C:0.999536712096421 28879 chr16 29819136 29819136 1 + A T LUSC 29819141 + 29819121 29819161 41 TGCTCCCACTGTGGCAAGAGCTTCTCCCGGTGTGCACGGGG TGCTCCCACTGTGGCTAGAGCTTCTCCCGGTGTGCACGGGG < 41bp 1 0.133227273550634 1 0.0931947231292725 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29819141 chr16:29819136 stopgain 1.000 0 16 hm5C_associated_SNPs_28540 0 0 1 0 1 Cytosol 1 0.500231643921086 1 0.999536712157828 hm5C_site_28879 DeepMRMD:1;iRNA_m5C:0.999536712157828 28880 chr3 66430866 66430866 1 + C T LUSC 66430873 - 66430853 66430893 41 GCAAGGTTGTATCACCCGGACTCCACAGAGCTACAGCCTGC GCAAGGTTGTATCACCCGGACTCCACAAAGCTACAGCCTGC < 41bp 1 0.534726152136138 1 0.641265511512756 experiment 0.930547695727724 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430873 chr3:66430866 nonsynonymous SNV 0.014 0 28 hm5C_associated_SNPs_28541 0 0 1 0 1 Ribosome 1 0.500231643920572 0.717468976974488 0.999536712158855 hm5C_site_28880 DeepMRMD:0.717468976974488;iRNA_m5C:0.999536712158855 28881 chr19 37853740 37853740 1 + A T LUSC 37853759 + 37853739 37853779 41 CAGCGGACACACTCAGGGCTCAAGCCTTATGTGTGCAAGGA CTGCGGACACACTCAGGGCTCAAGCCTTATGTGTGCAAGGA < 41bp 1 0.345474359052617 1 0.0886876881122589 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HKR1 ENSG00000181666 CDS Human protein_coding chr19:37853759 chr19:37853740 nonsynonymous SNV 0.965 0 2 hm5C_associated_SNPs_28543 0 0 1 0 0 exosome 1 0.500231636510807 1 0.999536726978386 hm5C_site_28881 DeepMRMD:1;iRNA_m5C:0.999536726978386 28882 chr5 140076610 140076610 1 + A G LUSC 140076598 + 140076578 140076618 41 AACAAGCAGGCCCTGGAGGGCCTGGGAGACCTAAAGCTGCT AACAAGCAGGCCCTGGAGGGCCTGGGAGACCTGAAGCTGCT < 41bp 1 0.231922501850813 1 0.31829571723938 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076598 chr5:140076610 synonymous SNV . 0 33 hm5C_associated_SNPs_28544 0 0 1 0 2 Cytosol 1 0.500231643886363 1 0.999536712227274 hm5C_site_28882 DeepMRMD:1;iRNA_m5C:0.999536712227274 28883 chrX 107814687 107814687 1 + G T LUSC 107814691 + 107814671 107814711 41 GTTTTCCTGGTTTACAGGGTCCTCCAGTAAGTTATAAAATT GTTTTCCTGGTTTACATGGTCCTCCAGTAAGTTATAAAATT < 41bp 1 0.0121185557526849 1 0.0662120878696442 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107814691 chrX:107814687 nonsynonymous SNV 0.999 1 17 hm5C_associated_SNPs_28545 0 0 1 0 2 Ribosome 1 0.500231643922673 1 0.999536712154655 hm5C_site_28883 DeepMRMD:1;iRNA_m5C:0.999536712154655 28884 chr10 60580165 60580165 1 + G T LUSC 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGTATCT < 41bp 1 0.077619906460706 1 0.0821800231933594 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580165 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_28547 0 0 1 0 2 nucleus 1 0.500253023121998 1 0.999493953756003 hm5C_site_28884 DeepMRMD:1;iRNA_m5C:0.999493953756003 28885 chr11 118369096 118369096 1 + C T LUSC 118369113 + 118369093 118369133 41 ATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCA ATTTTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCA < 41bp 1 0.0217708548254592 1 0.178998112678528 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118369113 chr11:118369096 synonymous SNV . 0 4 hm5C_associated_SNPs_28548 0 0 1 0 1 Cytosol 1 0.500231643921098 1 0.999536712157804 hm5C_site_28885 DeepMRMD:1;iRNA_m5C:0.999536712157804 28886 chr16 30998277 30998277 1 + C T LUSC 30998260 + 30998240 30998280 41 ACTTCTACCGCCAGGGCCTGCGCCTGGGAGGTTGGCTCTTC ACTTCTACCGCCAGGGCCTGCGCCTGGGAGGTTGGCTTTTC < 41bp 1 0.627507418664261 1 0.348633974790573 experiment 0.744985162671478 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30998260 chr16:30998277 synonymous SNV . 0 38 hm5C_associated_SNPs_28549 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28886 DeepMRMD:1;iRNA_m5C:0.999536712157815 28887 chr12 132546657 132546657 1 + G T LUSC 132546658 + 132546638 132546678 41 CTGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCCGCC CTGTTTGCCTTTTCTAGACTCCGGGAGGCTCTGCTCCCGCC < 41bp 1 0.389112420467048 1 0.930741786956787 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546658 chr12:132546657 synonymous SNV . 0 20 hm5C_associated_SNPs_28551 0 0 0 0 1 Cytosol 1 0.500231643987783 0.138516426086426 0.999536712024434 hm5C_site_28887 DeepMRMD:0.138516426086426;iRNA_m5C:0.999536712024434 28888 chr11 119142539 119142539 1 + C T LUSC 119142558 + 119142538 119142578 41 TCGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG TTGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG < 41bp 1 0.275525169715566 1 0.212976902723312 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119142558 chr11:119142539 nonsynonymous SNV 0.990 5 2 hm5C_associated_SNPs_28553 0 0 0 0 2 Ribosome 1 0.500231644773718 1 0.999536710452564 hm5C_site_28888 DeepMRMD:1;iRNA_m5C:0.999536710452564 28889 chr14 104642931 104642931 1 + G A LUSC 104642936 + 104642916 104642956 41 CACTTGGCTCCCCCCGGCTGCCTGAGGCCCAGGTGATGCTA CACTTGGCTCCCCCCAGCTGCCTGAGGCCCAGGTGATGCTA < 41bp 1 0.200284553371153 1 0.271300613880157 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642936 chr14:104642931 nonsynonymous SNV 0.009 1 16 hm5C_associated_SNPs_28554 0 0 0 0 0 Ribosome 1 0.500231738793657 1 0.999536522412686 hm5C_site_28889 DeepMRMD:1;iRNA_m5C:0.999536522412686 28890 chr14 104642931 104642931 1 + G A LUSC 104642945 + 104642925 104642965 41 CCCCCCGGCTGCCTGAGGCCCAGGTGATGCTAGCCTGTGCC CCCCCCAGCTGCCTGAGGCCCAGGTGATGCTAGCCTGTGCC < 41bp 1 0.562355167816313 1 0.830368280410767 experiment 0.875289664367374 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642945 chr14:104642931 nonsynonymous SNV 0.009 1 7 hm5C_associated_SNPs_28555 0 0 0 0 0 Ribosome 1 0.500231643921092 0.339263439178466 0.999536712157815 hm5C_site_28890 DeepMRMD:0.339263439178466;iRNA_m5C:0.999536712157815 28891 chr7 43580843 43580843 1 + C A LUSC 43580837 + 43580817 43580857 41 GACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG GACGCTTTCTTCACGAGGCCCTTCTAAAAGGCACTCCTGAG < 41bp 1 0.0382241353431525 1 0.11330658197403 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43580837 chr7:43580843 stopgain 0.992 1 27 hm5C_associated_SNPs_28556 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28891 DeepMRMD:1;iRNA_m5C:0.999536712157815 28892 chr3 182597368 182597368 1 + A G LUSC 182597357 + 182597337 182597377 41 TATCTCTTGCACTCAGGGAGCATGAAAAACTATTTATGGAA TATCTCTTGCACTCAGGGAGCATGAAAAACTGTTTATGGAA < 41bp 1 0.479486626317193 1 0.59481143951416 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182597357 chr3:182597368 synonymous SNV . 0 32 hm5C_associated_SNPs_28557 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921289 0.81037712097168 0.999536712157422 hm5C_site_28892 DeepMRMD:0.81037712097168;iRNA_m5C:0.999536712157422 28893 chr13 111111236 111111236 1 + A G LUSC 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGGG < 41bp 1 0.696227772089394 1 0.799197793006897 experiment 0.607544455821213 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111236 synonymous SNV . 0 40 hm5C_associated_SNPs_28558 0 0 0 0 1 Cytosol 1 0.500231643921092 0.401604413986206 0.999536712157815 hm5C_site_28893 DeepMRMD:0.401604413986206;iRNA_m5C:0.999536712157815 28894 chr17 27844513 27844513 1 + G T LUSC 27844497 + 27844477 27844517 41 AATGAAAACCAGAGTACCCCCAAAAAAGAAAAACAGGAGTG AATGAAAACCAGAGTACCCCCAAAAAAGAAAAACAGTAGTG < 41bp 1 0.269542425275464 1 0.584478259086609 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAOK1 ENSG00000160551 CDS Human protein_coding chr17:27844497 chr17:27844513 stopgain 0.991 1 37 hm5C_associated_SNPs_28559 0 0 1 0 1 Nucleus 1 0.500231643921085 0.831043481826782 0.999536712157829 hm5C_site_28894 DeepMRMD:0.831043481826782;iRNA_m5C:0.999536712157829 28895 chr19 49377950 49377950 1 + G T LUSC 49377943 + 49377923 49377963 41 ACTTCAGGGGCTGGGGATATCGACCTGGAAAAGAGACAGAG ACTTCAGGGGCTGGGGATATCGACCTGTAAAAGAGACAGAG < 41bp 1 0.626733038193648 1 0.72926664352417 experiment 0.746533923612704 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377943 chr19:49377950 nonsynonymous SNV 0.001 1 28 hm5C_associated_SNPs_28560 0 0 1 0 0 Cytosol 1 0.50023164392765 0.54146671295166 0.999536712144701 hm5C_site_28895 DeepMRMD:0.54146671295166;iRNA_m5C:0.999536712144701 28896 chr19 49377950 49377950 1 + G T LUSC 49377947 + 49377927 49377967 41 CAGGGGCTGGGGATATCGACCTGGAAAAGAGACAGAGGAAG CAGGGGCTGGGGATATCGACCTGTAAAAGAGACAGAGGAAG < 41bp 1 0.545380142530691 1 0.776692092418671 experiment 0.909239714938618 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377947 chr19:49377950 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_28561 0 0 1 0 0 Cytosol 1 0.500231643921094 0.446615815162658 0.999536712157811 hm5C_site_28896 DeepMRMD:0.446615815162658;iRNA_m5C:0.999536712157811 28897 chr1 150325414 150325414 1 + G T LUSC 150325400 + 150325380 150325420 41 GCATTTCAAAAAGCATGGGGCTGAACACTACTGGGACCTTG GCATTTCAAAAAGCATGGGGCTGAACACTACTGGTACCTTG < 41bp 1 0.628712920781119 1 0.115493476390839 experiment 0.742574158437763 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150325400 chr1:150325414 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_28562 0 0 1 0 0 Nucleus 1 0.500231643921403 1 0.999536712157194 hm5C_site_28897 DeepMRMD:1;iRNA_m5C:0.999536712157194 28898 chr3 9515061 9515061 1 + C A LUSC 9515077 + 9515057 9515097 41 TGCCCATGGTGTGCAGGGATCCTCAGCCCGAACTCCATCTT TGCCAATGGTGTGCAGGGATCCTCAGCCCGAACTCCATCTT < 41bp 1 0.359096801956848 1 0.0577958822250366 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9515077 chr3:9515061 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_28563 0 0 1 0 0 Nucleus 1 0.500231643920907 1 0.999536712158186 hm5C_site_28898 DeepMRMD:1;iRNA_m5C:0.999536712158186 28899 chr19 11145695 11145695 1 + G T LUSC 11145691 + 11145671 11145711 41 TCGTGGATCATCAAGGACGACGCGGAGGTGGAGCGGCTGAC TCGTGGATCATCAAGGACGACGCGTAGGTGGAGCGGCTGAC < 41bp 1 0.526385885576366 1 0.286846339702606 experiment 0.947228228847269 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145691 chr19:11145695 stopgain 0.731 1 25 hm5C_associated_SNPs_28564 0 0 1 0 0 Nucleus 1 0.500231643574801 1 0.999536712850398 hm5C_site_28899 DeepMRMD:1;iRNA_m5C:0.999536712850398 28900 chr19 11145695 11145695 1 + G T LUSC 11145704 + 11145684 11145724 41 AGGACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG AGGACGACGCGTAGGTGGAGCGGCTGACCTGTGAGGAGGAG < 41bp 1 0.400826716540971 1 0.453097492456436 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145704 chr19:11145695 stopgain 0.731 1 12 hm5C_associated_SNPs_28565 0 0 1 0 0 Nucleus 1 0.500231643921095 1 0.99953671215781 hm5C_site_28900 DeepMRMD:1;iRNA_m5C:0.99953671215781 28901 chr19 11145695 11145695 1 + G T LUSC 11145707 + 11145687 11145727 41 ACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG ACGACGCGTAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG < 41bp 1 0.199894163868909 1 0.321041285991669 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145707 chr19:11145695 stopgain 0.731 1 9 hm5C_associated_SNPs_28566 0 0 1 0 0 Nucleus 1 0.500231643921086 1 0.999536712157828 hm5C_site_28901 DeepMRMD:1;iRNA_m5C:0.999536712157828 28902 chr19 36579962 36579962 1 + C T LUSC 36579965 + 36579945 36579985 41 AGAGACATCCAGATGATCAGCTGTGGGGCTGACAAGAGCAT AGAGACATCCAGATGATTAGCTGTGGGGCTGACAAGAGCAT < 41bp 1 0.334736211784795 1 0.216285228729248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579965 chr19:36579962 synonymous SNV . 0 18 hm5C_associated_SNPs_28567 0 0 1 0 2 Nucleus 1 0.500231766138585 1 0.99953646772283 hm5C_site_28902 DeepMRMD:1;iRNA_m5C:0.99953646772283 28903 chr5 14280498 14280498 1 + A T LUSC 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GTCAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT < 41bp 1 0.298771650135497 1 0.10762882232666 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280498 synonymous SNV . 0 2 hm5C_associated_SNPs_28568 0 0 1 0 2 Nucleus 1 0.500231643921088 1 0.999536712157824 hm5C_site_28903 DeepMRMD:1;iRNA_m5C:0.999536712157824 28904 chr11 120352074 120352074 1 + T C LUSC 120352068 + 120352048 120352088 41 GCAGCCCATGACAGGCATCCCTGCTGTGGAATCCACCCACC GCAGCCCATGACAGGCATCCCTGCTGCGGAATCCACCCACC < 41bp 1 0.566604554340801 1 0.21507403254509 experiment 0.866790891318398 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120352068 chr11:120352074 nonsynonymous SNV 0.046 0 27 hm5C_associated_SNPs_28569 0 0 1 0 0 Cytosol 1 0.500231644301813 1 0.999536711396374 hm5C_site_28904 DeepMRMD:1;iRNA_m5C:0.999536711396374 28905 chr11 120352075 120352075 1 + G T LUSC 120352068 + 120352048 120352088 41 GCAGCCCATGACAGGCATCCCTGCTGTGGAATCCACCCACC GCAGCCCATGACAGGCATCCCTGCTGTTGAATCCACCCACC < 41bp 1 0.6022428021107 1 0.142653197050095 experiment 0.795514395778601 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120352068 chr11:120352075 synonymous SNV . 0 28 hm5C_associated_SNPs_28570 0 0 1 0 0 Cytosol 1 0.500231643922383 1 0.999536712155235 hm5C_site_28905 DeepMRMD:1;iRNA_m5C:0.999536712155235 28906 chr19 50385600 50385600 1 + C T LUSC 50385593 + 50385573 50385613 41 GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGC GCAGCCACAGCCTGAGGGAGCCGCCTCTGACCTTCCCCCGC < 41bp 1 0.296552434695099 1 0.167969614267349 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385593 chr19:50385600 synonymous SNV . 0 28 hm5C_associated_SNPs_28571 0 0 1 0 1 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_28906 DeepMRMD:1;iRNA_m5C:0.999536712157815 28907 chr19 50385600 50385600 1 + C T LUSC 50385594 + 50385574 50385614 41 CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGCC CAGCCACAGCCTGAGGGAGCCGCCTCTGACCTTCCCCCGCC < 41bp 1 0.614224669203567 1 0.467171281576157 experiment 0.771550661592866 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385594 chr19:50385600 synonymous SNV . 0 27 hm5C_associated_SNPs_28572 0 0 1 0 1 membrane 1 0.50023164392109 1 0.99953671215782 hm5C_site_28907 DeepMRMD:1;iRNA_m5C:0.99953671215782 28908 chr1 193205409 193205409 1 + T A LUSC 193205390 + 193205370 193205410 41 ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGTG ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGAG < 41bp 1 0.679730081109017 1 0.379281759262085 experiment 0.640539837781966 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205390 chr1:193205409 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_28573 0 0 1 0 2 Ribosome 1 0.500231643948877 1 0.999536712102246 hm5C_site_28908 DeepMRMD:1;iRNA_m5C:0.999536712102246 28909 chr2 197583269 197583269 1 + A T LUSC 197583260 + 197583240 197583280 41 TTGAAAGAAGTAAAGAGGAGCTGTCCCGAACAGTGAAGTGT TTGAAAGAAGTAAAGAGGAGCTGTCCCGATCAGTGAAGTGT < 41bp 1 0.0427447481345952 1 0.123191267251968 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197583260 chr2:197583269 nonsynonymous SNV 0.020 1 30 hm5C_associated_SNPs_28575 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643923291 1 0.999536712153419 hm5C_site_28909 DeepMRMD:1;iRNA_m5C:0.999536712153419 28910 chr7 148876570 148876570 1 + G C LUSC 148876555 + 148876535 148876575 41 AGCACCTGCTGAACCACCGGCGGCTGCACACAGGCGAGCGG AGCACCTGCTGAACCACCGGCGGCTGCACACAGGCCAGCGG < 41bp 1 0.449766646620258 1 0.791322648525238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148876555 chr7:148876570 nonsynonymous SNV 0.869 4 36 hm5C_associated_SNPs_28576 0 0 1 0 0 chromatin 1 0.500231643477652 0.417354702949524 0.999536713044696 hm5C_site_28910 DeepMRMD:0.417354702949524;iRNA_m5C:0.999536713044696 28911 chr17 7836605 7836605 1 + G C LUSC 7836604 + 7836584 7836624 41 CCGCCTCATGAAGGGTTAGACGGCTTCGCCCAAGAATTGAG CCGCCTCATGAAGGGTTAGACCGCTTCGCCCAAGAATTGAG < 41bp 1 0.248481854822895 1 0.0967779755592346 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7836604 chr17:7836605 nonsynonymous SNV 0.045 1 22 hm5C_associated_SNPs_28577 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28911 DeepMRMD:1;iRNA_m5C:0.999536712157815 28912 chrX 149924208 149924208 1 + G C LUSC 149924206 + 149924186 149924226 41 TATGGTCGTATATCAATAGCCAGCTAGACGAGTTTTCTAAT TATGGTCGTATATCAATAGCCACCTAGACGAGTTTTCTAAT < 41bp 1 0.270869561071229 1 0.168064415454865 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149924206 chrX:149924208 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_28578 0 0 0 0 1 Ribosome 1 0.500231643921256 1 0.999536712157489 hm5C_site_28912 DeepMRMD:1;iRNA_m5C:0.999536712157489 28913 chr1 214819593 214819593 1 + C A LUSC 214819612 + 214819592 214819632 41 TCAGAACTAGACAAGTTACTCTCTTCATTTAAAAGTCTGTT TAAGAACTAGACAAGTTACTCTCTTCATTTAAAAGTCTGTT < 41bp 1 0.0549989123361522 1 0.131546884775162 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214819612 chr1:214819593 stopgain 0.129 0 2 hm5C_associated_SNPs_28579 0 0 1 0 0 Nucleus 1 0.500231783623819 1 0.999536432752361 hm5C_site_28913 DeepMRMD:1;iRNA_m5C:0.999536432752361 28914 chr13 88329599 88329599 1 + G T LUSC 88329589 + 88329569 88329609 41 GTTGAATAGCACCGGGGCCCCCGCGAGCTTGGGCGCAGGCG GTTGAATAGCACCGGGGCCCCCGCGAGCTTTGGCGCAGGCG < 41bp 1 0.582895236463242 1 0.379363179206848 experiment 0.834209527073516 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88329589 chr13:88329599 nonsynonymous SNV 0.079 0 31 hm5C_associated_SNPs_28580 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_28914 DeepMRMD:1;iRNA_m5C:0.999536712157816 28915 chr2 238005479 238005479 1 + G T LUSC 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCAGGGGCCCTGTATGTTTCCTTTAACAA < 41bp 1 0.0513449820217485 1 0.0854389071464539 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005479 nonsynonymous SNV 0.842 3 25 hm5C_associated_SNPs_28581 0 0 1 0 2 Ribosome 1 0.500231643921832 1 0.999536712156336 hm5C_site_28915 DeepMRMD:1;iRNA_m5C:0.999536712156336 28916 chr7 128478840 128478840 1 + C G LUSC 128478838 + 128478818 128478858 41 CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG CCCATCACCCGCAGTCCCTTCCGTGTCCATGTGTCGGAAGG < 41bp 1 0.0871818842945602 1 0.0469450354576111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128478838 chr7:128478840 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_28582 0 0 1 0 1 chromatin 1 0.500231658475988 1 0.999536683048024 hm5C_site_28916 DeepMRMD:1;iRNA_m5C:0.999536683048024 28917 chr2 238005478 238005478 1 + G T LUSC 238005475 + 238005455 238005495 41 TTGAATTTAGTTGCAGGGGCCCTGGATGTTTCCTTTAACAA TTGAATTTAGTTGCAGGGGCCCTTGATGTTTCCTTTAACAA < 41bp 1 0.0242104886661666 1 0.106309026479721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COPS8 ENSG00000198612 CDS Human protein_coding chr2:238005475 chr2:238005478 synonymous SNV . 0 24 hm5C_associated_SNPs_28583 0 0 1 0 2 Ribosome 1 0.500231644141366 1 0.999536711717267 hm5C_site_28917 DeepMRMD:1;iRNA_m5C:0.999536711717267 28918 chr11 94533472 94533472 1 + A G LUSC 94533474 + 94533454 94533494 41 ACCCCCTGAGTATGGGGTAACGAGGTGATTATCAACTGCAG ACCCCCTGAGTATGGGGTGACGAGGTGATTATCAACTGCAG < 41bp 1 0.59739929278823 1 0.819646954536438 experiment 0.80520141442354 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94533474 chr11:94533472 synonymous SNV . 0 19 hm5C_associated_SNPs_28584 0 0 1 0 1 chromatin 1 0.500231644750238 0.360706090927124 0.999536710499523 hm5C_site_28918 DeepMRMD:0.360706090927124;iRNA_m5C:0.999536710499523 28919 chr12 53671319 53671319 1 + G A LUSC 53671316 + 53671296 53671336 41 GAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT GAGGAATTTGAAGTCAATGACCTAAACTATGAAGATAAACT < 41bp 1 0.0278174772384258 1 0.0790231227874756 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671316 chr12:53671319 synonymous SNV . 0 24 hm5C_associated_SNPs_28586 0 0 1 0 1 Nucleus 1 0.500231643921053 1 0.999536712157895 hm5C_site_28919 DeepMRMD:1;iRNA_m5C:0.999536712157895 28920 chr19 34263041 34263041 1 + C A LUSC 34263033 + 34263013 34263053 41 TCCGCCAGCGCCGTCGCCGTCTGCTCATCAAGAAAATGCCA TCCGCCAGCGCCGTCGCCGTCTGCTCATAAAGAAAATGCCA < 41bp 1 0.483645176428265 1 0.408077418804169 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHST8 ENSG00000124302 CDS Human protein_coding chr19:34263033 chr19:34263041 synonymous SNV . 0 29 hm5C_associated_SNPs_28587 0 0 0 0 0 exosome 1 0.500231643921138 1 0.999536712157723 hm5C_site_28920 DeepMRMD:1;iRNA_m5C:0.999536712157723 28921 chr19 36212476 36212476 1 + G T LUSC 36212461 + 36212441 36212481 41 CACAGACACAGGCTCAGCTACTGCAGCCCCTGCAGGCCTTG CACAGACACAGGCTCAGCTACTGCAGCCCCTGCAGTCCTTG < 41bp 1 0.420125050734727 1 0.228055149316788 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36212461 chr19:36212476 nonsynonymous SNV 0.876 1 36 hm5C_associated_SNPs_28588 0 0 1 0 0 chromatin 1 0.500231623649423 1 0.999536752701153 hm5C_site_28921 DeepMRMD:1;iRNA_m5C:0.999536752701153 28922 chr15 73996319 73996319 1 + C G LUSC 73996337 + 73996317 73996357 41 GCCGTCAGCCTGCAGGTGGCCGGTGAGCACCAGGAGGGCGA GCGGTCAGCCTGCAGGTGGCCGGTGAGCACCAGGAGGGCGA < 41bp 1 0.464726311243303 1 0.414564043283463 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD276 ENSG00000103855 CDS Human protein_coding chr15:73996337 chr15:73996319 synonymous SNV . 0 3 hm5C_associated_SNPs_28589 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28922 DeepMRMD:1;iRNA_m5C:0.999536712157815 28923 chr19 10897272 10897272 1 + G T LUSC 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG GGGAGTCGCTGCCTGCCCTACGTAGCAAACTACAGAGCCAG < 41bp 1 0.171161846451224 1 0.266859412193298 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897272 synonymous SNV . 0 14 hm5C_associated_SNPs_28590 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_28923 DeepMRMD:1;iRNA_m5C:0.999536712157815 28924 chr20 39744069 39744069 1 + A G LUSC 39744076 + 39744056 39744096 41 GATGATCTTTTTGATAGACTCAATGTGAGTAGATGAAGCAC GATGATCTTTTTGGTAGACTCAATGTGAGTAGATGAAGCAC < 41bp 1 0.524290130144396 1 0.460263162851334 experiment 0.951419739711209 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOP1 ENSG00000198900 CDS Human protein_coding chr20:39744076 chr20:39744069 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_28591 0 0 1 0 2 Nucleus 1 0.500231642678904 1 0.999536714642191 hm5C_site_28924 DeepMRMD:1;iRNA_m5C:0.999536714642191 28925 chr5 52978959 52978959 1 + G C LUSC 52978955 + 52978935 52978975 41 TTTTTCCTCCTAGGATGGAGCTATGACATTGAAGAGAGGAA TTTTTCCTCCTAGGATGGAGCTATCACATTGAAGAGAGGAA < 41bp 1 0.0795678168021876 1 0.176331400871277 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFS4 ENSG00000164258 CDS Human protein_coding chr5:52978955 chr5:52978959 stoploss 0.922 2 25 hm5C_associated_SNPs_28592 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28925 DeepMRMD:1;iRNA_m5C:0.999536712157815 28926 chr19 55670703 55670703 1 + G A LUSC 55670721 - 55670701 55670741 41 TTTGCTCCACAGACCGGGGCCAGGCCTTCAGAGACCTTCGC TTTGCTCCACAGACCGGGGCCAGGCCTTCAGAGACCTTTGC < 41bp 1 0.330862920783565 1 0.329132318496704 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNAAF3 ENSG00000167646;ENSG00000267110 CDS Human other chr19:55670721 chr19:55670703 synonymous SNV . 0 39 hm5C_associated_SNPs_28593 0 0 0 0 0 nucleolus 1 0.500231673632235 1 0.99953665273553 hm5C_site_28926 DeepMRMD:1;iRNA_m5C:0.99953665273553 28927 chr17 65735103 65735103 1 + G C LUSC 65735123 + 65735103 65735143 41 GACATCCCAGCACAGCATATCACGGTAAGTGTTCATACAAG CACATCCCAGCACAGCATATCACGGTAAGTGTTCATACAAG < 41bp 1 0.686120065054523 1 0.6334188580513 experiment 0.627759869890953 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735123 chr17:65735103 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_28596 0 0 1 0 2 Nucleus 1 0.500231034167713 0.7331622838974 0.999537931664574 hm5C_site_28927 DeepMRMD:0.7331622838974;iRNA_m5C:0.999537931664574 28928 chr6 7393360 7393360 1 + G C LUSC 7393371 + 7393351 7393391 41 ACAGTCAAAGAGAAGGATGACATTCTGTTTGAAGACCTTCA ACAGTCAAACAGAAGGATGACATTCTGTTTGAAGACCTTCA < 41bp 1 0.072774966652208 1 0.0355271399021149 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7393371 chr6:7393360 nonsynonymous SNV 0.007 0 10 hm5C_associated_SNPs_28597 0 0 1 0 1 Ribosome 1 0.500231646165896 1 0.999536707668208 hm5C_site_28928 DeepMRMD:1;iRNA_m5C:0.999536707668208 28929 chr19 34949731 34949731 1 + G C LUSC 34949745 + 34949725 34949765 41 GCACTGGATCCTCCCAACCCCAATTGTTATGTATGTGCCAG GCACTGCATCCTCCCAACCCCAATTGTTATGTATGTGCCAG < 41bp 1 0.304657414233725 1 0.0678133964538574 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34949745 chr19:34949731 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_28598 0 0 1 0 2 Cytosol 1 0.500231643921545 1 0.99953671215691 hm5C_site_28929 DeepMRMD:1;iRNA_m5C:0.99953671215691 28930 chr19 36216153 36216153 1 + G A LUSC 36216159 + 36216139 36216179 41 AACGTGTGGCTGATGGGGGGCCTGAGTGTGCTCACCTCTGT AACGTGTGGCTGATAGGGGGCCTGAGTGTGCTCACCTCTGT < 41bp 1 0.134310429294729 1 0.119138360023499 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216159 chr19:36216153 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_28599 0 0 1 0 2 chromatin 1 0.5002316439179 1 0.999536712164199 hm5C_site_28930 DeepMRMD:1;iRNA_m5C:0.999536712164199 28931 chr19 36216153 36216153 1 + G A LUSC 36216160 + 36216140 36216180 41 ACGTGTGGCTGATGGGGGGCCTGAGTGTGCTCACCTCTGTG ACGTGTGGCTGATAGGGGGCCTGAGTGTGCTCACCTCTGTG < 41bp 1 0.232509152390151 1 0.142841666936874 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216160 chr19:36216153 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_28600 0 0 1 0 2 chromatin 1 0.500231632613393 1 0.999536734773213 hm5C_site_28931 DeepMRMD:1;iRNA_m5C:0.999536734773213 28932 chr2 136396191 136396191 1 + C G LUSC 136396190 + 136396170 136396210 41 ATCTATTCTTTTTTCTAGTCCCTGTGTTCCCAAGAGAATTA ATCTATTCTTTTTTCTAGTCCGTGTGTTCCCAAGAGAATTA < 41bp 1 0.085136065867257 1 0.0871041715145111 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136396190 chr2:136396191 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_28601 0 0 1 0 2 Cytosol 1 0.50023164364941 1 0.99953671270118 hm5C_site_28932 DeepMRMD:1;iRNA_m5C:0.99953671270118 28933 chr15 73007720 73007720 1 + C A LUSC 73007740 + 73007720 73007760 41 CCTCAAGCAGGTGGCCAGATCTTTGTGAGTATTGGCAACCT ACTCAAGCAGGTGGCCAGATCTTTGTGAGTATTGGCAACCT < 41bp 1 0.444164256771646 1 0.33273258805275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BBS4 ENSG00000140463 CDS Human protein_coding chr15:73007740 chr15:73007720 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_28602 0 0 0 0 2 Ribosome 1 0.50023164389894 1 0.999536712202119 hm5C_site_28933 DeepMRMD:1;iRNA_m5C:0.999536712202119 28934 chr2 54871464 54871464 1 + G T LUSC 54871469 + 54871449 54871489 41 TTGTTTTCCAGGAAGGAATGCAGCTCATTTCAGAAAAGCCT TTGTTTTCCAGGAAGTAATGCAGCTCATTTCAGAAAAGCCT < 41bp 1 0.0481830515169937 1 0.439074069261551 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54871469 chr2:54871464 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_28603 0 0 1 0 1 Nucleus 1 0.500231655371466 1 0.999536689257068 hm5C_site_28934 DeepMRMD:1;iRNA_m5C:0.999536689257068 28935 chr2 54871464 54871464 1 + G T LUSC 54871472 + 54871452 54871492 41 TTTTCCAGGAAGGAATGCAGCTCATTTCAGAAAAGCCTGAG TTTTCCAGGAAGTAATGCAGCTCATTTCAGAAAAGCCTGAG < 41bp 1 0.141498908815216 1 0.0479891002178192 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54871472 chr2:54871464 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_28604 0 0 1 0 1 Nucleus 1 0.500231643920265 1 0.99953671215947 hm5C_site_28935 DeepMRMD:1;iRNA_m5C:0.99953671215947 28936 chr2 54871464 54871464 1 + G T LUSC 54871474 + 54871454 54871494 41 TTCCAGGAAGGAATGCAGCTCATTTCAGAAAAGCCTGAGAC TTCCAGGAAGTAATGCAGCTCATTTCAGAAAAGCCTGAGAC < 41bp 1 0.0230105218016672 1 0.047519326210022 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54871474 chr2:54871464 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_28605 0 0 1 0 1 Nucleus 1 0.500231643920991 1 0.999536712158019 hm5C_site_28936 DeepMRMD:1;iRNA_m5C:0.999536712158019 28937 chr16 2106207 2106207 1 + C T LUSC 2106203 + 2106183 2106223 41 GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAC GGTGCTCCCTGCAGGATGATCTGTTTGCTGTGCGTCCGGAC < 41bp 1 0.355265524059245 1 0.0615011155605316 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2106203 chr16:2106207 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_28606 0 0 1 0 2 Endoplasmic reticulum 1 0.500231680816057 1 0.999536638367885 hm5C_site_28937 DeepMRMD:1;iRNA_m5C:0.999536638367885 28938 chr17 16342876 16342876 1 + A C LUSC 16342874 + 16342854 16342894 41 GAAGCGATAACTGACGACGTCTAATGTCTATCTGACCGCAG GAAGCGATAACTGACGACGTCTCATGTCTATCTGACCGCAG < 41bp 1 0.279823583939454 1 0.130376994609833 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342874 chr17:16342876 . . 0 23 hm5C_associated_SNPs_28607 0 0 1 0 1 Nucleus 1 0.50023164391937 1 0.99953671216126 hm5C_site_28938 DeepMRMD:1;iRNA_m5C:0.99953671216126 28939 chr17 16342876 16342876 1 + A C LUSC 16342881 + 16342861 16342901 41 TAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGA TAACTGACGACGTCTCATGTCTATCTGACCGCAGTCGCTGA < 41bp 1 0.118118828459956 1 0.0679621696472168 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342881 chr17:16342876 . . 0 16 hm5C_associated_SNPs_28608 0 0 1 0 1 Nucleus 1 0.500231711206946 1 0.999536577586107 hm5C_site_28939 DeepMRMD:1;iRNA_m5C:0.999536577586107 28940 chr11 77301394 77301394 1 + G A LUSC 77301390 + 77301370 77301410 41 CATGTCCCCCGAGACGGGTGCGGTGAGGCTATTGGCTCAGC CATGTCCCCCGAGACGGGTGCGGTAAGGCTATTGGCTCAGC < 41bp 1 0.652278829139568 1 0.52704256772995 experiment 0.695442341720864 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AQP11 ENSG00000178301 CDS Human protein_coding chr11:77301390 chr11:77301394 synonymous SNV . 0 25 hm5C_associated_SNPs_28609 0 0 1 0 0 Ribosome 1 0.500231643921093 0.9459148645401 0.999536712157815 hm5C_site_28940 DeepMRMD:0.9459148645401;iRNA_m5C:0.999536712157815 28941 chr1 162725039 162725039 1 + G T LUSC 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCTA < 41bp 1 0.486319886767091 1 0.747806072235107 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725039 nonsynonymous SNV 0.996 4 40 hm5C_associated_SNPs_28610 0 0 0 0 2 nucleolus 1 0.500231610644829 0.504387855529786 0.999536778710343 hm5C_site_28941 DeepMRMD:0.504387855529786;iRNA_m5C:0.999536778710343 28942 chr1 874782 874782 1 + C A LUSC 874779 + 874759 874799 41 CAGCGCCTCTACCACCTGGGCCTCCCCAGCCACGGTGAGGA CAGCGCCTCTACCACCTGGGCCTACCCAGCCACGGTGAGGA < 41bp 1 0.064587247584402 1 0.0356760919094086 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874779 chr1:874782 synonymous SNV . 0 24 hm5C_associated_SNPs_28611 0 0 0 0 2 nucleus 1 0.500232489734185 1 0.999535020531631 hm5C_site_28942 DeepMRMD:1;iRNA_m5C:0.999535020531631 28943 chr3 119205770 119205770 1 + A T LUSC 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAATTCTATGAAAGTAAT < 41bp 1 0.654110429566307 1 0.162904053926468 experiment 0.691779140867386 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205770 nonsynonymous SNV 0.994 4 27 hm5C_associated_SNPs_28612 0 0 1 4 2 Ribosome 1 0.500231643934279 1 0.999536712131442 hm5C_site_28943 DeepMRMD:1;iRNA_m5C:0.999536712131442 28944 chr7 142458536 142458536 1 + G T LUSC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGTG < 41bp 1 0.0874669954492969 1 0.0400304198265076 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458536 nonsynonymous SNV 0.873 5 40 hm5C_associated_SNPs_28613 0 0 0 0 2 Cytosol 1 0.500231646260884 1 0.999536707478232 hm5C_site_28944 DeepMRMD:1;iRNA_m5C:0.999536707478232 28945 chr7 142458536 142458536 1 + G T LUSC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGTGT < 41bp 1 0.154554864039144 1 0.0420148372650146 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458536 nonsynonymous SNV 0.873 5 39 hm5C_associated_SNPs_28614 0 0 0 0 2 Cytosol 1 0.500219215230481 1 0.999561569539039 hm5C_site_28945 DeepMRMD:1;iRNA_m5C:0.999561569539039 28946 chr7 142458536 142458536 1 + G T LUSC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGTGTG < 41bp 1 0.352148283611243 1 0.188113927841187 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458536 nonsynonymous SNV 0.873 5 38 hm5C_associated_SNPs_28615 0 0 0 0 2 Cytosol 1 0.500231643521259 1 0.999536712957482 hm5C_site_28946 DeepMRMD:1;iRNA_m5C:0.999536712957482 28947 chr7 142458536 142458536 1 + G T LUSC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGTGTGGT < 41bp 1 0.44261292798582 1 0.671075105667114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458536 nonsynonymous SNV 0.873 5 36 hm5C_associated_SNPs_28616 0 0 0 0 2 Cytosol 1 0.50023119358634 0.657849788665772 0.999537612827321 hm5C_site_28947 DeepMRMD:0.657849788665772;iRNA_m5C:0.999537612827321 28948 chr7 142458536 142458536 1 + G T LUSC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAACGAACAGTGTGTGGTATCAGC < 41bp 1 0.378751539515787 1 0.342386782169342 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458536 nonsynonymous SNV 0.873 5 30 hm5C_associated_SNPs_28618 0 0 0 0 2 Cytosol 1 0.500232034742751 1 0.999535930514498 hm5C_site_28948 DeepMRMD:1;iRNA_m5C:0.999535930514498 28949 chr7 142458536 142458536 1 + G T LUSC 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAACGAACAGTGTGTGGTATCAGCAGGC < 41bp 1 0.437285774365908 1 0.385057598352432 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458536 nonsynonymous SNV 0.873 5 26 hm5C_associated_SNPs_28619 0 0 0 0 2 Cytosol 1 0.500231644235273 1 0.999536711529454 hm5C_site_28949 DeepMRMD:1;iRNA_m5C:0.999536711529454 28950 chr7 142458536 142458536 1 + G T LUSC 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGTGTGTGGTATCAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.545230851238533 1 0.777710795402527 experiment 0.909538297522933 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458536 nonsynonymous SNV 0.873 5 10 hm5C_associated_SNPs_28620 0 0 0 0 2 Cytosol 1 0.500231643845511 0.444578409194946 0.999536712308979 hm5C_site_28950 DeepMRMD:0.444578409194946;iRNA_m5C:0.999536712308979 28951 chr7 142458536 142458536 1 + G T LUSC 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGTGTGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT < 41bp 1 0.17643172060378 1 0.387425899505615 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458536 nonsynonymous SNV 0.873 5 6 hm5C_associated_SNPs_28621 0 0 0 0 2 Cytosol 1 0.500231644083617 1 0.999536711832767 hm5C_site_28951 DeepMRMD:1;iRNA_m5C:0.999536711832767 28952 chr7 142458536 142458536 1 + G T LUSC 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGTGTGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG < 41bp 1 0.389807149480651 1 0.196201354265213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458536 nonsynonymous SNV 0.873 5 5 hm5C_associated_SNPs_28622 0 0 0 0 2 Cytosol 1 0.500231830972158 1 0.999536338055684 hm5C_site_28952 DeepMRMD:1;iRNA_m5C:0.999536338055684 28953 chr7 142458536 142458536 1 + G T LUSC 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG TGTGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG < 41bp 1 0.33243743005568 1 0.110515981912613 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458536 nonsynonymous SNV 0.873 5 3 hm5C_associated_SNPs_28623 0 0 0 0 2 Cytosol 1 0.500239121749118 1 0.999521756501764 hm5C_site_28953 DeepMRMD:1;iRNA_m5C:0.999521756501764 28954 chr17 73727999 73727999 1 + C A LUSC 73727993 + 73727973 73728013 41 CAACATCCATCTGAAACCTTCCTTCTCCGACGGCCTCAAGA CAACATCCATCTGAAACCTTCCTTCTACGACGGCCTCAAGA < 41bp 1 0.00723901764182868 1 0.0369027853012085 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73727993 chr17:73727999 nonsynonymous SNV 0.792 4 27 hm5C_associated_SNPs_28625 0 0 0 0 1 Cytosol 1 0.500231643921284 1 0.999536712157432 hm5C_site_28954 DeepMRMD:1;iRNA_m5C:0.999536712157432 28955 chr1 228566491 228566491 1 + C G LUSC 228566484 + 228566464 228566504 41 TACAAGAGGCACAACCTGGCCCAGGTGCGCTGAGGGTCGCC TACAAGAGGCACAACCTGGCCCAGGTGGGCTGAGGGTCGCC < 41bp 1 0.111017354692537 1 0.777245223522186 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228566484 chr1:228566491 nonsynonymous SNV 0.410 1 28 hm5C_associated_SNPs_28626 0 0 1 0 0 Ribosome 1 0.500231643921092 0.445509552955628 0.999536712157815 hm5C_site_28955 DeepMRMD:0.445509552955628;iRNA_m5C:0.999536712157815 28956 chr1 7796554 7796554 1 + G T LUSC 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCCGCGGAATGACCCTACTCCACCTGGCCTCTGCCCAGGG < 41bp 1 0.264112894143446 1 0.146364569664001 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796554 nonsynonymous SNV 0.990 4 31 hm5C_associated_SNPs_28627 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28956 DeepMRMD:1;iRNA_m5C:0.999536712157815 28957 chr2 191795202 191795202 1 + C G LUSC 191795198 + 191795178 191795218 41 AAATCTGGAGTTGCTGGGGGCATTCTTTTAGTTGTCCCCAA AAATCTGGAGTTGCTGGGGGCATTGTTTTAGTTGTCCCCAA < 41bp 1 0.174605750051513 1 0.121117770671844 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLS ENSG00000115419 CDS Human protein_coding chr2:191795198 chr2:191795202 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_28628 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_28957 DeepMRMD:1;iRNA_m5C:0.999536712157815 28958 chr10 98744490 98744490 1 + G C LUSC 98744477 + 98744457 98744497 41 GGGCCTACGGTGAAAGCCAGCAAAGAAAAGCATGCTGATGG GGGCCTACGGTGAAAGCCAGCAAAGAAAAGCATCCTGATGG < 41bp 1 0.579313233204826 1 0.397761255502701 experiment 0.841373533590348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LCOR ENSG00000155640 CDS Human other chr10:98744477 chr10:98744490 nonsynonymous SNV 0.065 0 34 hm5C_associated_SNPs_28629 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28958 DeepMRMD:1;iRNA_m5C:0.999536712157815 28959 chr18 34289066 34289066 1 + G T LUSC 34289065 + 34289045 34289085 41 TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCGAATC TTGTCTCCACCAGCAAGTGCCTGGGATCCTGAACCCGAATC < 41bp 1 0.541312005544165 1 0.49390920996666 experiment 0.917375988911669 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289065 chr18:34289066 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_28630 0 0 0 0 1 exosome 1 0.500231643942373 1 0.999536712115254 hm5C_site_28959 DeepMRMD:1;iRNA_m5C:0.999536712115254 28960 chr19 50753939 50753939 1 + G T LUSC 50753921 + 50753901 50753941 41 CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCGGG CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCTGG < 41bp 1 0.672016397670016 1 0.52364456653595 experiment 0.655967204659968 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753921 chr19:50753939 synonymous SNV . 0 39 hm5C_associated_SNPs_28631 0 0 0 0 1 cytosol 1 0.500231643924564 0.9527108669281 0.999536712150872 hm5C_site_28960 DeepMRMD:0.9527108669281;iRNA_m5C:0.999536712150872 28961 chr12 6979488 6979488 1 + C T LUSC 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCTTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG < 41bp 1 0.122933028793337 1 0.0329270362854004 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979488 nonsynonymous SNV 0.981 2 5 hm5C_associated_SNPs_28632 0 0 1 0 1 Ribosome 1 0.500231643934891 1 0.999536712130219 hm5C_site_28961 DeepMRMD:1;iRNA_m5C:0.999536712130219 28962 chr12 6979488 6979488 1 + C T LUSC 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT TTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT < 41bp 1 0.609196157497091 1 0.831946909427643 experiment 0.781607685005818 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979488 nonsynonymous SNV 0.981 2 1 hm5C_associated_SNPs_28633 0 0 1 0 1 Ribosome 1 0.500231645000435 0.336106181144714 0.999536709999129 hm5C_site_28962 DeepMRMD:0.336106181144714;iRNA_m5C:0.999536709999129 28963 chr11 9530358 9530358 1 + A C LUSC 9530377 + 9530357 9530397 41 GAGGAGGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTGA GCGGAGGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTGA < 41bp 1 0.472472186868154 1 0.0795351564884186 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9530377 chr11:9530358 nonsynonymous SNV 0.999 4 2 hm5C_associated_SNPs_28634 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_28963 DeepMRMD:1;iRNA_m5C:0.999536712157815 28964 chr10 71158372 71158372 1 + G A LUSC 71158355 + 71158335 71158375 41 CTCTTGTCCCCCACAGTGACCGATTAGCACTGCTCCAGGTC CTCTTGTCCCCCACAGTGACCGATTAGCACTGCTCCAAGTC < 41bp 1 0.148314138985733 1 0.0373712778091431 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71158355 chr10:71158372 synonymous SNV . 0 38 hm5C_associated_SNPs_28635 0 0 1 0 1 chromatin 1 0.50023164357071 1 0.99953671285858 hm5C_site_28964 DeepMRMD:1;iRNA_m5C:0.99953671285858 28965 chr20 3520918 3520918 1 + A T LUSC 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAGAGTGTTGTTGGGACCATTTATATGTTTATGATGG < 41bp 1 0.0237424763107944 1 0.088699072599411 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520918 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_28636 0 0 1 0 2 Ribosome 1 0.500231643919023 1 0.999536712161954 hm5C_site_28965 DeepMRMD:1;iRNA_m5C:0.999536712161954 28966 chr16 460303 460303 1 + T A LUSC 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGACCGAGATGGACATCGATACCAGCGGCACCTTCAA < 41bp 1 0.531958634688005 1 0.405347406864166 experiment 0.936082730623991 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460303 nonsynonymous SNV 0.919 4 11 hm5C_associated_SNPs_28637 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28966 DeepMRMD:1;iRNA_m5C:0.999536712157815 28967 chr7 90226026 90226026 1 + C A LUSC 90226022 + 90226002 90226042 41 AGAACTTTGTCGGAGAGTTTCAGTCGCATTGGTGAGTAGCG AGAACTTTGTCGGAGAGTTTCAGTAGCATTGGTGAGTAGCG < 41bp 1 0.523781100637851 1 0.42452135682106 experiment 0.952437798724297 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90226022 chr7:90226026 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_28638 0 0 0 0 1 Nucleus 1 0.500231643925031 1 0.999536712149937 hm5C_site_28967 DeepMRMD:1;iRNA_m5C:0.999536712149937 28968 chr3 133099870 133099870 1 + T C LUSC 133099869 + 133099849 133099889 41 CGCCTGGTCCCCGCCGGGACCTGGAAGCCTGGGACAGCAGG CGCCTGGTCCCCGCCGGGACCCGGAAGCCTGGGACAGCAGG < 41bp 1 0.55949216696125 1 0.518962621688843 experiment 0.881015666077501 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM108 ENSG00000144868 CDS Human protein_coding chr3:133099869 chr3:133099870 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_28639 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643172535 0.962074756622314 0.999536713654931 hm5C_site_28968 DeepMRMD:0.962074756622314;iRNA_m5C:0.999536713654931 28969 chr2 56419918 56419918 1 + C T LUSC 56419925 + 56419905 56419945 41 GGCCAGCCTGTGCCAACTCACAGCCTCCACCGCACCCTACG GGCCAGCCTGTGCTAACTCACAGCCTCCACCGCACCCTACG < 41bp 1 0.593288126386898 1 0.471185088157654 experiment 0.813423747226203 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56419925 chr2:56419918 stopgain 0.938 1 14 hm5C_associated_SNPs_28640 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_28969 DeepMRMD:1;iRNA_m5C:0.999536712157815 28970 chr5 148730833 148730833 1 + G C LUSC 148730829 + 148730809 148730849 41 AGTGGAAGTGGCAGTGGAGTCTCAGAGAAGACTGTGAAGAG AGTGGAAGTGGCAGTGGAGTCTCACAGAAGACTGTGAAGAG < 41bp 1 0.695047592678984 1 0.432484984397888 experiment 0.609904814642032 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GRPEL2 ENSG00000164284 CDS Human protein_coding chr5:148730829 chr5:148730833 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_28641 0 0 1 0 0 Cytosol 1 0.500231643924976 1 0.999536712150047 hm5C_site_28970 DeepMRMD:1;iRNA_m5C:0.999536712150047 28971 chr1 228362651 228362651 1 + C G LUSC 228362665 + 228362645 228362685 41 CCTCACCCAGGATGAAGGCCCAGCCCTGGTGCCCGGGGGCC CCTCACGCAGGATGAAGGCCCAGCCCTGGTGCCCGGGGGCC < 41bp 1 0.508095757987838 1 0.220157712697983 experiment 0.983808484024324 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IBA57 ENSG00000181873 CDS Human protein_coding chr1:228362665 chr1:228362651 synonymous SNV . 0 7 hm5C_associated_SNPs_28642 0 0 1 0 1 Ribosome 1 0.50023164392117 1 0.999536712157661 hm5C_site_28971 DeepMRMD:1;iRNA_m5C:0.999536712157661 28972 chr17 62223788 62223788 1 + G T LUSC 62223769 + 62223749 62223789 41 CTGCAGCGCTAGAGCATGTGCTTGCGCATAACTGGGGCCGC CTGCAGCGCTAGAGCATGTGCTTGCGCATAACTGGGGCCTC < 41bp 1 0.330214330245523 1 0.105809360742569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223769 chr17:62223788 . . 0 40 hm5C_associated_SNPs_28643 0 0 1 0 0 unknown 1 0.500231643923635 1 0.999536712152729 hm5C_site_28972 DeepMRMD:1;iRNA_m5C:0.999536712152729 28973 chr17 62223788 62223788 1 + G T LUSC 62223787 + 62223767 62223807 41 TGCTTGCGCATAACTGGGGCCGCCTGGCCTCCCGCGGGCGG TGCTTGCGCATAACTGGGGCCTCCTGGCCTCCCGCGGGCGG < 41bp 1 0.209975089775285 1 0.0763234198093414 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223787 chr17:62223788 . . 0 22 hm5C_associated_SNPs_28644 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28973 DeepMRMD:1;iRNA_m5C:0.999536712157815 28974 chr17 62223788 62223788 1 + G T LUSC 62223795 + 62223775 62223815 41 CATAACTGGGGCCGCCTGGCCTCCCGCGGGCGGCCTTTTTA CATAACTGGGGCCTCCTGGCCTCCCGCGGGCGGCCTTTTTA < 41bp 1 0.344477157101462 1 0.716111063957214 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223795 chr17:62223788 . . 0 14 hm5C_associated_SNPs_28645 0 0 1 0 0 unknown 1 0.500231643921093 0.567777872085572 0.999536712157815 hm5C_site_28974 DeepMRMD:0.567777872085572;iRNA_m5C:0.999536712157815 28975 chr17 62223788 62223788 1 + G T LUSC 62223805 + 62223785 62223825 41 GCCGCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCGAGCG GCCTCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCGAGCG < 41bp 1 0.372460940999676 1 0.233799487352371 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223805 chr17:62223788 . . 0 4 hm5C_associated_SNPs_28646 0 0 1 0 0 unknown 1 0.500231643921094 1 0.999536712157813 hm5C_site_28975 DeepMRMD:1;iRNA_m5C:0.999536712157813 28976 chr17 62223788 62223788 1 + G T LUSC 62223808 + 62223788 62223828 41 GCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCGAGCGACA TCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCGAGCGACA < 41bp 1 0.0256884787274411 1 0.0235040783882141 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223808 chr17:62223788 . . 0 1 hm5C_associated_SNPs_28647 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_28976 DeepMRMD:1;iRNA_m5C:0.999536712157815 28977 chr1 32502597 32502597 1 + G T LUSC 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTCGTGGACGTGGGGTTCCAGTGAGAGGCCGGGGAGCT < 41bp 1 0.67693091450939 1 0.548099279403687 experiment 0.64613817098122 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502597 synonymous SNV . 0 20 hm5C_associated_SNPs_28649 0 0 1 0 2 Nucleus 1 0.500231600211488 0.903801441192626 0.999536799577023 hm5C_site_28977 DeepMRMD:0.903801441192626;iRNA_m5C:0.999536799577023 28978 chr15 59348032 59348032 1 + G A LUSC 59348026 + 59348006 59348046 41 ATGCAGCAGAAGTTGTGGACCTTACCGTTGATGAAGATGGT ATGCAGCAGAAGTTGTGGACCTTACCATTGATGAAGATGGT < 41bp 1 0.0376244002108969 1 0.097503274679184 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF111 ENSG00000157450 CDS Human protein_coding chr15:59348026 chr15:59348032 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_28650 0 0 0 0 1 Ribosome 1 0.500231632648166 1 0.999536734703669 hm5C_site_28978 DeepMRMD:1;iRNA_m5C:0.999536734703669 28979 chr5 176520503 176520503 1 + G A LUSC 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCA < 41bp 1 0.134215696231834 1 0.0573561489582062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4;FGFR4 ENSG00000160867;ENSG00000160867 exonic;splicing Human other chr5:176520483 chr5:176520503 nonsynonymous SNV 0.485 2 41 hm5C_associated_SNPs_28651 0 0 1 0 2 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_28979 DeepMRMD:1;iRNA_m5C:0.999536712157812 28980 chr20 30386278 30386278 1 + G T LUSC 30386297 + 30386277 30386317 41 AGCCCAGCAGTTGGAGGAGGCCAGACTACAGGAGGAAGAGC ATCCCAGCAGTTGGAGGAGGCCAGACTACAGGAGGAAGAGC < 41bp 1 0.514221040155011 1 0.296442687511444 experiment 0.971557919689979 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30386297 chr20:30386278 nonsynonymous SNV 0.970 0 2 hm5C_associated_SNPs_28653 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28980 DeepMRMD:1;iRNA_m5C:0.999536712157815 28981 chr22 31266612 31266612 1 + G T LUSC 31266632 + 31266612 31266652 41 GAAGGTGGTGAATGAGCGGGCCACCCTCTTCCGCATCACAT TAAGGTGGTGAATGAGCGGGCCACCCTCTTCCGCATCACAT < 41bp 1 0.0387987017831239 1 0.0956145226955414 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31266632 chr22:31266612 synonymous SNV . 0 1 hm5C_associated_SNPs_28654 0 0 0 0 1 Cytosol 1 0.500231643930871 1 0.999536712138258 hm5C_site_28981 DeepMRMD:1;iRNA_m5C:0.999536712138258 28982 chr12 109536308 109536308 1 + C A LUSC 109536312 + 109536292 109536332 41 CCTCGCCGCTGAGTGCCGAGCAGTTGGACCGGATCCAGAGG CCTCGCCGCTGAGTGCAGAGCAGTTGGACCGGATCCAGAGG < 41bp 1 0.558141235128809 1 0.524835407733917 experiment 0.883717529742382 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109536312 chr12:109536308 synonymous SNV . 0 17 hm5C_associated_SNPs_28655 0 0 1 0 1 Ribosome 1 0.500231643920016 0.950329184532166 0.999536712159968 hm5C_site_28982 DeepMRMD:0.950329184532166;iRNA_m5C:0.999536712159968 28983 chr16 67006829 67006829 1 + A T LUSC 67006809 + 67006789 67006829 41 CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCA CCCAATTCAACCAGGCGGAACAATATCTGGAGATCAACCCT < 41bp 1 0.241568813585748 1 0.228232890367508 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:67006809 chr16:67006829 synonymous SNV . 0 41 hm5C_associated_SNPs_28656 0 0 1 0 1 nucleolus 1 0.500231643921065 1 0.99953671215787 hm5C_site_28983 DeepMRMD:1;iRNA_m5C:0.99953671215787 28984 chr19 6833257 6833257 1 + A T LUSC 6833263 + 6833243 6833283 41 GATGTTCTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC GATGTTCTCCTTTGTGGAGACCACATCCTGCAAGGCCTGTC < 41bp 1 0.427460481218275 1 0.14230027794838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833263 chr19:6833257 nonsynonymous SNV 0.993 3 15 hm5C_associated_SNPs_28657 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921192 1 0.999536712157616 hm5C_site_28984 DeepMRMD:1;iRNA_m5C:0.999536712157616 28985 chr18 74625758 74625758 1 + C T LUSC 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGTGGTCGCACACCGGGGAAAAGCCCTAC < 41bp 1 0.323403509747822 1 0.109749108552933 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625758 nonsynonymous SNV 0.873 4 15 hm5C_associated_SNPs_28658 0 0 0 0 2 Cytosol 1 0.500235383102982 1 0.999529233794035 hm5C_site_28985 DeepMRMD:1;iRNA_m5C:0.999529233794035 28986 chr13 20567803 20567803 1 + G A LUSC 20567812 + 20567792 20567832 41 GTAAGCTCTGTGAATGATGGCCAATTAGAAAATACTGACGG GTAAGCTCTGTAAATGATGGCCAATTAGAAAATACTGACGG < 41bp 1 0.0636801233774643 1 0.137154579162598 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZMYM2 ENSG00000121741 CDS Human protein_coding chr13:20567812 chr13:20567803 synonymous SNV . 0 12 hm5C_associated_SNPs_28659 0 0 1 0 0 Nucleus 1 0.500227288049516 1 0.999545423900969 hm5C_site_28986 DeepMRMD:1;iRNA_m5C:0.999545423900969 28987 chr13 20567803 20567803 1 + G A LUSC 20567813 + 20567793 20567833 41 TAAGCTCTGTGAATGATGGCCAATTAGAAAATACTGACGGG TAAGCTCTGTAAATGATGGCCAATTAGAAAATACTGACGGG < 41bp 1 0.0661753479822093 1 0.184142261743546 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZMYM2 ENSG00000121741 CDS Human protein_coding chr13:20567813 chr13:20567803 synonymous SNV . 0 11 hm5C_associated_SNPs_28660 0 0 1 0 0 Nucleus 1 0.500231643917503 1 0.999536712164995 hm5C_site_28987 DeepMRMD:1;iRNA_m5C:0.999536712164995 28988 chr20 57480498 57480498 1 + C T LUSC 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGCGTGCCTGCTACGAATGCTCCAACGA < 41bp 1 0.452736541775193 1 0.319553405046463 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480498 nonsynonymous SNV 0.986 5 31 hm5C_associated_SNPs_28661 1 0 1 0 2 Cytosol 1 0.500292040416065 1 0.999415919167871 hm5C_site_28988 DeepMRMD:1;iRNA_m5C:0.999415919167871 Pseudohypoparathyroidism type 1A Pseudohypoparathyroidism type 1A 28989 chr20 57480498 57480498 1 + C T LUSC 57480512 + 57480492 57480532 41 TACGAACGCTCCAACGAGTACCAGCTGATTGACTGTGCCCA TACGAATGCTCCAACGAGTACCAGCTGATTGACTGTGCCCA < 41bp 1 0.141494980955494 1 0.0771267414093018 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480512 chr20:57480498 nonsynonymous SNV 0.986 5 7 hm5C_associated_SNPs_28662 1 0 1 0 2 Cytosol 1 0.500231636103205 1 0.99953672779359 hm5C_site_28989 DeepMRMD:1;iRNA_m5C:0.99953672779359 Pseudohypoparathyroidism type 1A Pseudohypoparathyroidism type 1A 28990 chr12 120878332 120878332 1 + G C LUSC 120878328 + 120878308 120878348 41 AATCCACTTCCAACTGGCTACGAAGATGAATAAAGAGAATC AATCCACTTCCAACTGGCTACGAACATGAATAAAGAGAATC < 41bp 1 0.165315584425354 1 0.143697202205658 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX6A1 ENSG00000111775 CDS Human protein_coding chr12:120878328 chr12:120878332 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_28664 0 0 1 0 1 Ribosome 1 0.500231644623848 1 0.999536710752304 hm5C_site_28990 DeepMRMD:1;iRNA_m5C:0.999536710752304 28991 chr6 31713065 31713065 1 + C T LUSC 31713049 + 31713029 31713069 41 TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGCCAGTG TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGCTAGTG < 41bp 1 0.345707884096085 1 0.518393158912659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31713049 chr6:31713065 synonymous SNV . 0 37 hm5C_associated_SNPs_28665 0 0 1 0 1 Cytosol 1 0.500231643921092 0.963213682174682 0.999536712157815 hm5C_site_28991 DeepMRMD:0.963213682174682;iRNA_m5C:0.999536712157815 28992 chr6 21594886 21594886 1 + T C LUSC 21594902 + 21594882 21594922 41 CGCCTCCACGGGCGGCAAGGCCGACGACCCGAGCTGGTGCA CGCCCCCACGGGCGGCAAGGCCGACGACCCGAGCTGGTGCA < 41bp 1 0.334376403310798 1 0.172705769538879 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SOX4 ENSG00000124766 CDS Human protein_coding chr6:21594902 chr6:21594886 nonsynonymous SNV 0.995 1 5 hm5C_associated_SNPs_28666 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_28992 DeepMRMD:1;iRNA_m5C:0.999536712157815 28993 chr5 118877679 118877679 1 + C G LUSC 118877694 + 118877674 118877714 41 CTACGCCAAGCTCTGAAGGGCACACTACACTATTAATAAAA CTACGGCAAGCTCTGAAGGGCACACTACACTATTAATAAAA < 41bp 1 0.177243877590375 1 0.0844927430152893 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118877694 chr5:118877679 nonsynonymous SNV 0.996 2 6 hm5C_associated_SNPs_28667 0 0 1 0 1 Cytosol 1 0.500231643921091 1 0.999536712157817 hm5C_site_28993 DeepMRMD:1;iRNA_m5C:0.999536712157817 28994 chr9 100405529 100405529 1 + G C LUSC 100405545 + 100405525 100405565 41 ATTAGTTGGACTACTGAATGCCAGGAATTACAATTTTGGTG ATTACTTGGACTACTGAATGCCAGGAATTACAATTTTGGTG < 41bp 1 0.307135173959362 1 0.496228754520416 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100405545 chr9:100405529 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_28668 0 0 1 0 1 Nucleus 1 0.500231643921188 1 0.999536712157624 hm5C_site_28994 DeepMRMD:1;iRNA_m5C:0.999536712157624 28995 chr22 35719874 35719874 1 + C T LUSC 35719884 + 35719864 35719904 41 CCATACTCTCCGGTGACACGCCCATAGCACCAACCCCGGAA CCATACTCTCTGGTGACACGCCCATAGCACCAACCCCGGAA < 41bp 1 0.179890655690355 1 0.117949515581131 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719884 chr22:35719874 synonymous SNV 0.002 0 11 hm5C_associated_SNPs_28669 0 0 1 0 1 Cytosol 1 0.500231643921115 1 0.999536712157771 hm5C_site_28995 DeepMRMD:1;iRNA_m5C:0.999536712157771 28996 chr7 100210419 100210419 1 + G C LUSC 100210428 + 100210408 100210448 41 AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGG AGCCTGCATGCCCCGTGGGGCGCCCCAGGACCAGGAGCTGG < 41bp 1 0.370745674776147 1 0.112857669591904 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210428 chr7:100210419 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_28670 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_28996 DeepMRMD:1;iRNA_m5C:0.999536712157815 28997 chr7 100210419 100210419 1 + G C LUSC 100210430 + 100210410 100210450 41 CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTG CCTGCATGCCCCGTGGGGCGCCCCAGGACCAGGAGCTGGTG < 41bp 1 0.681796574793726 1 0.111792385578156 experiment 0.636406850412548 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210430 chr7:100210419 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_28671 0 0 1 0 1 Cytosol 1 0.500231643921084 1 0.999536712157832 hm5C_site_28997 DeepMRMD:1;iRNA_m5C:0.999536712157832 28998 chr7 100210419 100210419 1 + G C LUSC 100210431 + 100210411 100210451 41 CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGG CTGCATGCCCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGG < 41bp 1 0.452907752797444 1 0.765119612216949 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210431 chr7:100210419 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_28672 0 0 1 0 1 Cytosol 1 0.500231645317945 0.469760775566102 0.99953670936411 hm5C_site_28998 DeepMRMD:0.469760775566102;iRNA_m5C:0.99953670936411 28999 chr7 100210419 100210419 1 + G C LUSC 100210432 + 100210412 100210452 41 TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGG TGCATGCCCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGG < 41bp 1 0.538803100226406 1 0.78532999753952 experiment 0.922393799547188 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210432 chr7:100210419 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_28673 0 0 1 0 1 Cytosol 1 0.500231643921091 0.42934000492096 0.999536712157819 hm5C_site_28999 DeepMRMD:0.42934000492096;iRNA_m5C:0.999536712157819 29000 chr2 211502545 211502545 1 + A T LUSC 211502553 + 211502533 211502573 41 GGTTAAAGAAAAACATCCACCCTTGGGTTAAACAGGTAAAG GGTTAAAGAAAATCATCCACCCTTGGGTTAAACAGGTAAAG < 41bp 1 0.0546275082007496 1 0.17290398478508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211502553 chr2:211502545 nonsynonymous SNV 0.999 3 13 hm5C_associated_SNPs_28674 0 0 0 0 1 Nucleus 1 0.500231644614904 1 0.999536710770191 hm5C_site_29000 DeepMRMD:1;iRNA_m5C:0.999536710770191 29001 chr16 82891990 82891990 1 + A G LUSC 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGTGCTGCTGCTAACATCTGCAGAGGATTTGGACTGCA < 41bp 1 0.595043870559693 1 0.805320620536804 experiment 0.809912258880614 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891990 synonymous SNV . 0 28 hm5C_associated_SNPs_28675 0 0 0 0 2 Nucleus 1 0.500231677769389 0.389358758926392 0.999536644461222 hm5C_site_29001 DeepMRMD:0.389358758926392;iRNA_m5C:0.999536644461222 29002 chr11 65273148 65273148 1 + G A LUSC 65273153 + 65273133 65273173 41 GGTAACGATGGTGTCGAGGTCTTTGGTGGGTTGAACTATGT GGTAACGATGGTGTCAAGGTCTTTGGTGGGTTGAACTATGT < 41bp 1 0.449501848088695 1 0.231234520673752 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273153 chr11:65273148 . . 0 16 hm5C_associated_SNPs_28677 0 0 1 0 0 unknown 1 0.500232174342526 1 0.999535651314949 hm5C_site_29002 DeepMRMD:1;iRNA_m5C:0.999535651314949 29003 chr11 65273148 65273148 1 + G A LUSC 65273168 + 65273148 65273188 41 GAGGTCTTTGGTGGGTTGAACTATGTTAGAAAAGGCCATTA AAGGTCTTTGGTGGGTTGAACTATGTTAGAAAAGGCCATTA < 41bp 1 0.603829243331453 1 0.2643803358078 experiment 0.792341513337095 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273168 chr11:65273148 . . 0 1 hm5C_associated_SNPs_28678 0 0 1 0 0 unknown 1 0.500231643921043 1 0.999536712157915 hm5C_site_29003 DeepMRMD:1;iRNA_m5C:0.999536712157915 29004 chr2 207174838 207174838 1 + C A LUSC 207174847 + 207174827 207174867 41 TTTGATGATGACTGTGAGACCAAAAAAGTTTCTTCGAAGGG TTTGATGATGAATGTGAGACCAAAAAAGTTTCTTCGAAGGG < 41bp 1 0.435120454891077 1 0.126999408006668 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207174847 chr2:207174838 nonsynonymous SNV 0.987 0 12 hm5C_associated_SNPs_28679 0 0 1 0 0 Nucleus 1 0.500231643932581 1 0.999536712134839 hm5C_site_29004 DeepMRMD:1;iRNA_m5C:0.999536712134839 29005 chr17 16285603 16285603 1 + G C LUSC 16285613 + 16285593 16285633 41 GCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCC GCAGCTGGAACATGGCCGCACTCTTTCTGACTACAACATCC < 41bp 1 0.309903497429523 1 0.101642191410065 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UBB ENSG00000170315 CDS Human protein_coding chr17:16285613 chr17:16285603 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_28680 0 0 1 0 0 Ribosome 1 0.500227685611224 1 0.999544628777552 hm5C_site_29005 DeepMRMD:1;iRNA_m5C:0.999544628777552 29006 chr14 38679143 38679143 1 + G T LUSC 38679144 + 38679124 38679164 41 TAAACCTGGGCGTGTGGGTGCTATCGCTGCTCGTCATCCTG TAAACCTGGGCGTGTGGGTTCTATCGCTGCTCGTCATCCTG < 41bp 1 0.218675768532594 1 0.104252308607101 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSTR1 ENSG00000139874 CDS Human protein_coding chr14:38679144 chr14:38679143 synonymous SNV . 0 20 hm5C_associated_SNPs_28681 0 0 0 0 0 nucleus 1 0.500231643885585 1 0.999536712228829 hm5C_site_29006 DeepMRMD:1;iRNA_m5C:0.999536712228829 29007 chr2 233704599 233704599 1 + C T LUSC 233704582 + 233704562 233704602 41 CCTTCTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGC CCTTCTTCTTCAACGTGGGGCCAGCAGTCCAATACAATAGC < 41bp 1 0.0497481170286036 1 0.213628321886063 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704582 chr2:233704599 nonsynonymous SNV 0.991 0 38 hm5C_associated_SNPs_28682 0 0 1 0 2 Nucleus 1 0.500230811024219 1 0.999538377951563 hm5C_site_29007 DeepMRMD:1;iRNA_m5C:0.999538377951563 29008 chr2 233704599 233704599 1 + C T LUSC 233704586 + 233704566 233704606 41 CTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGCATGT CTTCTTCAACGTGGGGCCAGCAGTCCAATACAATAGCATGT < 41bp 1 0.102789441206996 1 0.609280407428741 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704586 chr2:233704599 nonsynonymous SNV 0.991 0 34 hm5C_associated_SNPs_28683 0 0 1 0 2 Nucleus 1 0.500231643921092 0.781439185142518 0.999536712157815 hm5C_site_29008 DeepMRMD:0.781439185142518;iRNA_m5C:0.999536712157815 29009 chr10 118314942 118314942 1 + C G LUSC 118314925 + 118314905 118314945 41 GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCCAAA GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCGAAA < 41bp 1 0.106256521535217 1 0.0621080100536346 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314925 chr10:118314942 nonsynonymous SNV 1.000 5 38 hm5C_associated_SNPs_28684 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29009 DeepMRMD:1;iRNA_m5C:0.999536712157815 29010 chr21 42629177 42629177 1 + C T LUSC 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCTACGGTG < 41bp 1 0.53285287426216 1 0.113607376813889 experiment 0.934294251475679 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629177 synonymous SNV . 0 35 hm5C_associated_SNPs_28685 0 0 1 0 2 Ribosome 1 0.500244117175963 1 0.999511765648074 hm5C_site_29010 DeepMRMD:1;iRNA_m5C:0.999511765648074 29011 chr16 601556 601556 1 + G A LUSC 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGACAGC < 41bp 1 0.0240060889901214 1 0.0508137047290802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601556 nonsynonymous SNV 0.988 5 37 hm5C_associated_SNPs_28686 0 0 1 0 1 chromatin 1 0.500231643895714 1 0.999536712208571 hm5C_site_29011 DeepMRMD:1;iRNA_m5C:0.999536712208571 29012 chr16 601556 601556 1 + G A LUSC 601547 + 601527 601567 41 AAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG AAACCCGTGGGGCCGTTTCTCCTGGAACGACAGCTGGTCCG < 41bp 1 0.483540520042573 1 0.80096709728241 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601547 chr16:601556 nonsynonymous SNV 0.988 5 30 hm5C_associated_SNPs_28687 0 0 1 0 1 chromatin 1 0.500231643921035 0.39806580543518 0.999536712157931 hm5C_site_29012 DeepMRMD:0.39806580543518;iRNA_m5C:0.999536712157931 29013 chr10 75557803 75557803 1 + T C LUSC 75557805 + 75557785 75557825 41 CTGGCTCTCACGTACTTATTCTTCCCACGTTTCCTGGATTA CTGGCTCTCACGTACTTACTCTTCCCACGTTTCCTGGATTA < 41bp 1 0.11351707015939 1 0.207676887512207 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557805 chr10:75557803 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_28688 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29013 DeepMRMD:1;iRNA_m5C:0.999536712157815 29014 chr2 46985771 46985771 1 + C T LUSC 46985774 + 46985754 46985794 41 AATGTGGACATGAACTCCAACAGATGTTTGTCTGTCAAAGA AATGTGGACATGAACTCTAACAGATGTTTGTCTGTCAAAGA < 41bp 1 0.530991821086668 1 0.168557941913605 experiment 0.938016357826664 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOCS5 ENSG00000171150 CDS Human protein_coding chr2:46985774 chr2:46985771 synonymous SNV . 0 18 hm5C_associated_SNPs_28689 0 0 0 0 0 Cytosol 1 0.500231878359158 1 0.999536243281684 hm5C_site_29014 DeepMRMD:1;iRNA_m5C:0.999536243281684 29015 chr7 94917905 94917905 1 + G A LUSC 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCAGAAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA < 41bp 1 0.502760510122826 1 0.163000345230103 experiment 0.994478979754348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917905 nonsynonymous SNV 0.459 3 9 hm5C_associated_SNPs_28690 0 0 1 0 1 Nucleus 1 0.5002316439335 1 0.999536712133 hm5C_site_29015 DeepMRMD:1;iRNA_m5C:0.999536712133 29016 chr16 772325 772325 1 + A G LUSC 772313 + 772293 772333 41 CTGTTCTCTCCCTCAGCTCCCGCTGCTGGAGGACAAGCTGC CTGTTCTCTCCCTCAGCTCCCGCTGCTGGAGGGCAAGCTGC < 41bp 1 0.439313657300459 1 0.0888529717922211 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM173A ENSG00000103254 CDS Human protein_coding chr16:772313 chr16:772325 nonsynonymous SNV 0.938 0 33 hm5C_associated_SNPs_28691 0 0 1 0 1 Ribosome 1 0.50023174829035 1 0.9995365034193 hm5C_site_29016 DeepMRMD:1;iRNA_m5C:0.9995365034193 29017 chr19 49644750 49644750 1 + G T LUSC 49644738 + 49644718 49644758 41 GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAG GGGCTAGCCAAGCTGACAGGCCCAGGAGACAATGACCGAAG < 41bp 1 0.216339938498986 1 0.384296238422394 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644738 chr19:49644750 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_28692 0 0 0 0 2 Cytosol 1 0.500231643760091 1 0.999536712479818 hm5C_site_29017 DeepMRMD:1;iRNA_m5C:0.999536712479818 29018 chr19 56925400 56925400 1 + A T LUSC 56925395 + 56925375 56925415 41 ATGGGAATGGCTGAACCCTGCTCAGAGGAATTTGTACAGGA ATGGGAATGGCTGAACCCTGCTCAGTGGAATTTGTACAGGA < 41bp 1 0.699654799574867 1 0.137085467576981 experiment 0.600690400850266 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925395 chr19:56925400 nonsynonymous SNV 0.286 3 26 hm5C_associated_SNPs_28693 0 0 0 0 2 chromatin 1 0.500215020036711 1 0.999569959926577 hm5C_site_29018 DeepMRMD:1;iRNA_m5C:0.999569959926577 29019 chr1 237052583 237052583 1 + G A LUSC 237052594 + 237052574 237052614 41 GGCAGCTCCGGGGCAAGTACCCGAATCGAGGCTTTCCCAAG GGCAGCTCCAGGGCAAGTACCCGAATCGAGGCTTTCCCAAG < 41bp 1 0.474458082271577 1 0.766167759895325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 CDS Human protein_coding chr1:237052594 chr1:237052583 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_28694 0 0 1 0 1 Nucleus 1 0.500231643921092 0.46766448020935 0.999536712157815 hm5C_site_29019 DeepMRMD:0.46766448020935;iRNA_m5C:0.999536712157815 29020 chr2 138762736 138762736 1 + T A LUSC 138762727 + 138762707 138762747 41 GTATTATGTAAAAGACATCCCAGCTACCCTGAAATTCTTCC GTATTATGTAAAAGACATCCCAGCTACCCAGAAATTCTTCC < 41bp 1 0.306792428807737 1 0.396398097276688 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HNMT ENSG00000150540 CDS Human protein_coding chr2:138762727 chr2:138762736 nonsynonymous SNV 0.993 2 30 hm5C_associated_SNPs_28695 0 0 1 0 2 Cytosol 1 0.500231643919282 1 0.999536712161435 hm5C_site_29020 DeepMRMD:1;iRNA_m5C:0.999536712161435 29021 chr17 61499206 61499206 1 + G C LUSC 61499200 + 61499180 61499220 41 ACGTGAAGGTAGCTCGGACTCTACCTGTGGCTCAGGCATAC ACGTGAAGGTAGCTCGGACTCTACCTCTGGCTCAGGCATAC < 41bp 1 0.355587612594159 1 0.0971373319625854 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TANC2 ENSG00000170921 CDS Human protein_coding chr17:61499200 chr17:61499206 nonsynonymous SNV 0.998 2 27 hm5C_associated_SNPs_28696 0 0 1 0 0 Cytosol 1 0.500231645934186 1 0.999536708131628 hm5C_site_29021 DeepMRMD:1;iRNA_m5C:0.999536708131628 29022 chrX 73043319 73043319 1 + C T LUSC 73043299 - 73043279 73043319 41 GAGAGATGAGGGCATTAGATCACTGACAGCTGAAGATAGAA AAGAGATGAGGGCATTAGATCACTGACAGCTGAAGATAGAA < 41bp 1 0.127878877845822 1 0.0734447836875916 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043299 chrX:73043319 . . 0 1 hm5C_associated_SNPs_28697 0 0 1 2 0 unknown 1 0.500231617146624 1 0.999536765706752 hm5C_site_29022 DeepMRMD:1;iRNA_m5C:0.999536765706752 29023 chrX 73043319 73043319 1 + C T LUSC 73043307 - 73043287 73043327 41 GAGGATAAGAGAGATGAGGGCATTAGATCACTGACAGCTGA GAGGATAAAAGAGATGAGGGCATTAGATCACTGACAGCTGA < 41bp 1 0.0823378511143115 1 0.0915734469890594 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043307 chrX:73043319 . . 0 9 hm5C_associated_SNPs_28698 0 0 1 2 0 unknown 1 0.500231643921089 1 0.999536712157823 hm5C_site_29023 DeepMRMD:1;iRNA_m5C:0.999536712157823 29024 chr16 31235576 31235576 1 + G A LUSC 31235556 + 31235536 31235576 41 GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGA < 41bp 1 0.272950844765709 1 0.082557737827301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235556 chr16:31235576 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_28699 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29024 DeepMRMD:1;iRNA_m5C:0.999536712157815 29025 chr11 68204453 68204453 1 + A T LUSC 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACGGCTCCGTCGAGCTCATGTGTGGTG < 41bp 1 0.0831519738937148 1 0.0910672843456268 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204453 nonsynonymous SNV 0.645 4 24 hm5C_associated_SNPs_28700 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921095 1 0.999536712157809 hm5C_site_29025 DeepMRMD:1;iRNA_m5C:0.999536712157809 29026 chr11 68204453 68204453 1 + A T LUSC 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACGGCTCCGTCGAGCTCATGTGTGGTGA < 41bp 1 0.239730239155627 1 0.321241319179535 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204453 nonsynonymous SNV 0.645 4 23 hm5C_associated_SNPs_28701 0 0 1 0 2 Endoplasmic reticulum 1 0.500231647746803 1 0.999536704506395 hm5C_site_29026 DeepMRMD:1;iRNA_m5C:0.999536704506395 29027 chr17 21319347 21319347 1 + G T LUSC 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGTGCGCGCGCATCTCATCAAGCCGCGGG < 41bp 1 0.43245189361402 1 0.131699293851852 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319347 nonsynonymous SNV 0.986 5 25 hm5C_associated_SNPs_28702 0 0 0 0 0 unknown 1 0.500231643971382 1 0.999536712057236 hm5C_site_29027 DeepMRMD:1;iRNA_m5C:0.999536712057236 29028 chr17 78335564 78335564 1 + A C LUSC 78335559 + 78335539 78335579 41 CCCAAGAAGTTCGTGGACATCTTTCAGCAGACTCCTCTGGG CCCAAGAAGTTCGTGGACATCTTTCCGCAGACTCCTCTGGG < 41bp 1 0.0275865138751964 1 0.0498823821544647 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78335559 chr17:78335564 nonsynonymous SNV 0.011 1 26 hm5C_associated_SNPs_28704 0 0 1 0 1 Nucleus 1 0.500231643921297 1 0.999536712157405 hm5C_site_29028 DeepMRMD:1;iRNA_m5C:0.999536712157405 29029 chr9 18504880 18504880 1 + G A LUSC 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGAGG < 41bp 1 0.309963044584991 1 0.348362386226654 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504880 stopgain 0.999 0 39 hm5C_associated_SNPs_28705 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29029 DeepMRMD:1;iRNA_m5C:0.999536712157815 29030 chr2 153494180 153494180 1 + G A LUSC 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAACATATAAG < 41bp 1 0.161736832782885 1 0.248919248580933 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494180 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_28706 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29030 DeepMRMD:1;iRNA_m5C:0.999536712157815 29031 chr11 61507949 61507949 1 + A C LUSC 61507955 + 61507935 61507975 41 CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGGG CTGCTGTGAGCAGGCGGAGCCCACATACTTTGCCATCTGGG < 41bp 1 0.115454935381908 1 0.314559757709503 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507955 chr11:61507949 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_28707 0 0 1 0 1 Endoplasmic reticulum 1 0.500231410276364 1 0.999537179447271 hm5C_site_29031 DeepMRMD:1;iRNA_m5C:0.999537179447271 29032 chr19 579631 579631 1 + C T LUSC 579629 + 579609 579649 41 CGTGGTGCTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGG CGTGGTGCTGAAGGAGGACGCGTTGCCCGGCCAGAAAACGG < 41bp 1 0.246573518169382 1 0.376305282115936 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579629 chr19:579631 synonymous SNV . 0 23 hm5C_associated_SNPs_28708 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29032 DeepMRMD:1;iRNA_m5C:0.999536712157815 29033 chr19 579631 579631 1 + C T LUSC 579636 + 579616 579656 41 CTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAA CTGAAGGAGGACGCGTTGCCCGGCCAGAAAACGGAGTTCAA < 41bp 1 0.548387886332846 1 0.797972440719604 experiment 0.903224227334308 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579636 chr19:579631 synonymous SNV . 0 16 hm5C_associated_SNPs_28709 0 0 1 0 1 Ribosome 1 0.500231643921092 0.404055118560792 0.999536712157815 hm5C_site_29033 DeepMRMD:0.404055118560792;iRNA_m5C:0.999536712157815 29034 chr16 12450136 12450136 1 + G T LUSC 12450135 + 12450115 12450155 41 GCTCATCGATCTCCGGGGACCGGTGAGTGTTTCCCCAACCC GCTCATCGATCTCCGGGGACCTGTGAGTGTTTCCCCAACCC < 41bp 1 0.333401492785088 1 0.142026573419571 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12450135 chr16:12450136 synonymous SNV . 0 22 hm5C_associated_SNPs_28712 0 0 1 0 1 Nucleus 1 0.500231643640868 1 0.999536712718265 hm5C_site_29034 DeepMRMD:1;iRNA_m5C:0.999536712718265 29035 chr20 1286607 1286607 1 + G A LUSC 1286602 + 1286582 1286622 41 ATCAGCTCCCTGCTGCGGGGCTGCTGCACTGTGGCCTTGCA ATCAGCTCCCTGCTGCGGGGCTGCTACACTGTGGCCTTGCA < 41bp 1 0.116122690138888 1 0.0873965919017792 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNPH ENSG00000101298 CDS Human protein_coding chr20:1286602 chr20:1286607 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_28713 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_29035 DeepMRMD:1;iRNA_m5C:0.999536712157815 29036 chr11 113078036 113078036 1 + G T LUSC 113078025 + 113078005 113078045 41 GCAGAATATTGTGAATGCCACCGCCAACCTCGGCCAGTCCG GCAGAATATTGTGAATGCCACCGCCAACCTCTGCCAGTCCG < 41bp 1 0.124229141964575 1 0.152986615896225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078025 chr11:113078036 nonsynonymous SNV 0.965 1 32 hm5C_associated_SNPs_28714 0 0 0 0 2 Ribosome 1 0.500231767013684 1 0.999536465972632 hm5C_site_29036 DeepMRMD:1;iRNA_m5C:0.999536465972632 29037 chr21 47986572 47986572 1 + G A LUSC 47986588 + 47986568 47986608 41 ATCCGAGCACACAGGAGCATCGCTGAGTGGTAAGAGCCCAG ATCCAAGCACACAGGAGCATCGCTGAGTGGTAAGAGCCCAG < 41bp 1 0.351872804310937 1 0.418894708156586 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986588 chr21:47986572 nonsynonymous SNV 0.993 4 5 hm5C_associated_SNPs_28715 0 0 1 0 2 Cytosol 1 0.500231643850828 1 0.999536712298344 hm5C_site_29037 DeepMRMD:1;iRNA_m5C:0.999536712298344 29038 chr2 32339808 32339808 1 + G A LUSC 32339810 + 32339790 32339830 41 GGATCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTA GGATCTGCAGGCCTTTCAAGCCACCATAGAGCACCTAGTTA < 41bp 1 0.104398120341575 1 0.0842215120792389 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339810 chr2:32339808 nonsynonymous SNV 0.946 0 19 hm5C_associated_SNPs_28716 0 0 1 0 1 Ribosome 1 0.500231643921146 1 0.999536712157708 hm5C_site_29038 DeepMRMD:1;iRNA_m5C:0.999536712157708 29039 chr2 32339808 32339808 1 + G A LUSC 32339813 + 32339793 32339833 41 TCTGCAGGCCTTTCAGGCCACCATAGAGCACCTAGTTACAG TCTGCAGGCCTTTCAAGCCACCATAGAGCACCTAGTTACAG < 41bp 1 0.270303337792057 1 0.0479306578636169 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32339813 chr2:32339808 nonsynonymous SNV 0.946 0 16 hm5C_associated_SNPs_28717 0 0 1 0 1 Ribosome 1 0.500231643921102 1 0.999536712157797 hm5C_site_29039 DeepMRMD:1;iRNA_m5C:0.999536712157797 29040 chr6 106555118 106555118 1 + G T LUSC 106555109 + 106555089 106555129 41 AGTGACAATGCTGACCGGCTCGAGGACGTGGAGGATGACAT AGTGACAATGCTGACCGGCTCGAGGACGTTGAGGATGACAT < 41bp 1 0.553994061059714 1 0.864494383335114 experiment 0.892011877880573 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106555109 chr6:106555118 synonymous SNV . 0 30 hm5C_associated_SNPs_28718 0 0 0 0 0 cytosol 1 0.500231643921097 0.271011233329772 0.999536712157805 hm5C_site_29040 DeepMRMD:0.271011233329772;iRNA_m5C:0.999536712157805 29041 chr12 104056674 104056674 1 + C G LUSC 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCGAAAAATGGCCGAATTTACACACTGACAGG < 41bp 1 0.204292253425325 1 0.288525700569153 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056674 synonymous SNV . 0 12 hm5C_associated_SNPs_28719 0 0 0 0 1 nucleoplasm 1 0.500231643926183 1 0.999536712147635 hm5C_site_29041 DeepMRMD:1;iRNA_m5C:0.999536712147635 29042 chr22 38352842 38352842 1 + C T LUSC 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGAGAATGTCGAAGAGGT < 41bp 1 0.553498480423498 1 0.166638195514679 experiment 0.893003039153004 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352842 nonsynonymous SNV 0.942 1 32 hm5C_associated_SNPs_28721 0 0 1 0 3 Ribosome 1 0.500231643921085 1 0.999536712157829 hm5C_site_29042 DeepMRMD:1;iRNA_m5C:0.999536712157829 29043 chr9 35560827 35560827 1 + G A LUSC 35560834 + 35560814 35560854 41 CGAAAAGCCCAGCGGGAGGCCCGGCCCACAAATAGGTGAGA CGAAAAGCCCAGCAGGAGGCCCGGCCCACAAATAGGTGAGA < 41bp 1 0.0717582085454181 1 0.264071196317673 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RUSC2 ENSG00000198853 CDS Human protein_coding chr9:35560834 chr9:35560827 nonsynonymous SNV 0.959 0 14 hm5C_associated_SNPs_28723 0 0 1 0 1 Cytosol 1 0.500231643874807 1 0.999536712250385 hm5C_site_29043 DeepMRMD:1;iRNA_m5C:0.999536712250385 29044 chr2 170592392 170592392 1 + C T LUSC 170592378 + 170592358 170592398 41 TGGAGGCTATTACTGGCATCCTTTATCAGAGGTTCACATAT TGGAGGCTATTACTGGCATCCTTTATCAGAGGTTTACATAT < 41bp 1 0.297401437420553 1 0.744020760059357 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHL23;PHOSPHO2-KLHL23 ENSG00000213160 CDS Human protein_coding chr2:170592378 chr2:170592392 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_28724 0 0 1 0 0 unknown 1 0.500231643921092 0.511958479881286 0.999536712157815 hm5C_site_29044 DeepMRMD:0.511958479881286;iRNA_m5C:0.999536712157815 29045 chr12 109937553 109937553 1 + G C LUSC 109937571 + 109937551 109937591 41 AAGAAGTCCAACCTGACCCACTGGCATCCTGTCCTTGGCTG AACAAGTCCAACCTGACCCACTGGCATCCTGTCCTTGGCTG < 41bp 1 0.517272505083433 1 0.432911694049835 experiment 0.965454989833134 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE3B ENSG00000151148 CDS Human protein_coding chr12:109937571 chr12:109937553 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_28725 0 0 1 0 1 Cytosol 1 0.500231645426899 1 0.999536709146203 hm5C_site_29045 DeepMRMD:1;iRNA_m5C:0.999536709146203 29046 chr7 98601889 98601889 1 + G C LUSC 98601905 + 98601885 98601925 41 TCTTGGAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTC TCTTCGAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTC < 41bp 1 0.121926742924864 1 0.452069163322449 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98601905 chr7:98601889 nonsynonymous SNV 0.906 5 5 hm5C_associated_SNPs_28726 0 0 1 0 1 Nucleus 1 0.500231643880809 1 0.999536712238382 hm5C_site_29046 DeepMRMD:1;iRNA_m5C:0.999536712238382 29047 chr14 93043734 93043734 1 + G A LUSC 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTCGCCGGGACAGCAGCTCAAAGCAGCTGGT < 41bp 1 0.470962656517358 1 0.414933502674103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043734 synonymous SNV . 0 30 hm5C_associated_SNPs_28727 0 0 0 0 2 cytosol 1 0.500231643894222 1 0.999536712211555 hm5C_site_29047 DeepMRMD:1;iRNA_m5C:0.999536712211555 29048 chr7 149422532 149422532 1 + C G LUSC 149422538 + 149422518 149422558 41 CCAGCCAGGAGACTCTAGGTCTCAGAAGCCTGAACTGCAAC CCAGCCAGGAGACTGTAGGTCTCAGAAGCCTGAACTGCAAC < 41bp 1 0.35310900849384 1 0.494076997041702 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149422538 chr7:149422532 nonsynonymous SNV 0.000 1 15 hm5C_associated_SNPs_28728 0 0 0 0 1 Cytosol 1 0.500231643921595 1 0.999536712156811 hm5C_site_29048 DeepMRMD:1;iRNA_m5C:0.999536712156811 29049 chr3 51981791 51981791 1 + T A LUSC 51981779 + 51981759 51981799 41 TTGGCATGAAGTGTGGGGCCCACCATGTCGGCTACATGTTC TTGGCATGAAGTGTGGGGCCCACCATGTCGGCAACATGTTC < 41bp 1 0.579840062658029 1 0.160668134689331 experiment 0.840319874683941 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PARP3 ENSG00000041880 CDS Human protein_coding chr3:51981779 chr3:51981791 nonsynonymous SNV 0.965 3 33 hm5C_associated_SNPs_28729 0 0 0 0 1 nucleus 1 0.4992658295237 1 1 hm5C_site_29049 DeepMRMD:1;iRNA_m5C:1 29050 chr16 31123201 31123201 1 + G A LUSC 31123193 + 31123173 31123213 41 TGTTGCCATCTTGCTAGGATCTCAGACCGTGGTGGAGGAAT TGTTGCCATCTTGCTAGGATCTCAGACCATGGTGGAGGAAT < 41bp 1 0.390884815009505 1 0.185617089271545 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BCKDK ENSG00000103507 CDS Human protein_coding chr16:31123193 chr16:31123201 nonsynonymous SNV 0.948 4 29 hm5C_associated_SNPs_28730 0 0 1 0 1 Ribosome 1 0.500231731634636 1 0.999536536730729 hm5C_site_29050 DeepMRMD:1;iRNA_m5C:0.999536536730729 29051 chr3 99897173 99897173 1 + C G LUSC 99897188 + 99897168 99897208 41 AACTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAA AACTTGTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAA < 41bp 1 0.239194765779569 1 0.151932060718536 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897188 chr3:99897173 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_28731 0 0 1 0 1 Ribosome 1 0.500231656537519 1 0.999536686924961 hm5C_site_29051 DeepMRMD:1;iRNA_m5C:0.999536686924961 29052 chr3 99897173 99897173 1 + C G LUSC 99897190 + 99897170 99897210 41 CTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAATC CTTGTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAATC < 41bp 1 0.270511529890993 1 0.141157597303391 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897190 chr3:99897173 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_28732 0 0 1 0 1 Ribosome 1 0.500231647332428 1 0.999536705335145 hm5C_site_29052 DeepMRMD:1;iRNA_m5C:0.999536705335145 29053 chrX 56591625 56591625 1 + C A LUSC 56591612 + 56591592 56591632 41 AGCTCCCAGCCTTCCTGCAGCAGATGCAGAATCCAGACACA AGCTCCCAGCCTTCCTGCAGCAGATGCAGAATCAAGACACA < 41bp 1 0.345474193702142 1 0.325077533721924 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56591612 chrX:56591625 nonsynonymous SNV 0.995 5 34 hm5C_associated_SNPs_28733 0 0 1 0 0 nucleus 1 0.500231638315572 1 0.999536723368856 hm5C_site_29053 DeepMRMD:1;iRNA_m5C:0.999536723368856 29054 chr7 56130730 56130730 1 + C G LUSC 56130745 + 56130725 56130765 41 ATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTC ATTCTGTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTC < 41bp 1 0.439986909892619 1 0.0598278939723969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56130745 chr7:56130730 synonymous SNV . 0 6 hm5C_associated_SNPs_28734 0 0 1 0 1 Ribosome 1 0.500231619625626 1 0.999536760748747 hm5C_site_29054 DeepMRMD:1;iRNA_m5C:0.999536760748747 29055 chr20 57484842 57484842 1 + G C LUSC 57484828 + 57484808 57484848 41 CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAACAGCATC < 41bp 1 0.402872230266245 1 0.25898203253746 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNAS ENSG00000087460 CDS Human protein_coding chr20:57484828 chr20:57484842 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_28735 0 0 1 0 1 Cytosol 1 0.500231643891766 1 0.999536712216469 hm5C_site_29055 DeepMRMD:1;iRNA_m5C:0.999536712216469 29056 chr6 160477534 160477534 1 + C G LUSC 160477524 + 160477504 160477544 41 CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC CTGTGGAACACAGAGGCTGCCTGTCCCATTGAGACAACGAC < 41bp 1 0.0332560324846523 1 0.116905510425568 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160477524 chr6:160477534 nonsynonymous SNV 0.164 0 31 hm5C_associated_SNPs_28736 0 0 1 0 2 Endoplasmic reticulum 1 0.500221821922268 1 0.999556356155463 hm5C_site_29056 DeepMRMD:1;iRNA_m5C:0.999556356155463 29057 chr9 37432082 37432082 1 + C T LUSC 37432088 + 37432068 37432108 41 TGGACTGGATGTGACGAGCCCAGAACCACTGCCTACAAACC TGGACTGGATGTGATGAGCCCAGAACCACTGCCTACAAACC < 41bp 1 0.521611972755783 1 0.366869568824768 experiment 0.956776054488434 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37432088 chr9:37432082 nonsynonymous SNV 0.969 2 15 hm5C_associated_SNPs_28737 1 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29057 DeepMRMD:1;iRNA_m5C:0.999536712157815 Primary hyperoxaluria Primary hyperoxaluria 29058 chr18 13059273 13059273 1 + G T LUSC 13059272 + 13059252 13059292 41 GCAGAAGCTTTGGCCAGCACCGTCACTCTCACTGCCATTGC GCAGAAGCTTTGGCCAGCACCTTCACTCTCACTGCCATTGC < 41bp 1 0.506145012602131 1 0.39335572719574 experiment 0.987709974795737 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13059272 chr18:13059273 nonsynonymous SNV 0.008 4 22 hm5C_associated_SNPs_28738 0 0 1 0 0 Nucleus 1 0.500232705529273 1 0.999534588941455 hm5C_site_29058 DeepMRMD:1;iRNA_m5C:0.999534588941455 29059 chr1 110172949 110172949 1 + A G LUSC 110172951 + 110172931 110172971 41 TCCTCAGCTATCACCGGAATCCGCTACCGGAGTACCTGTCC TCCTCAGCTATCACCGGAGTCCGCTACCGGAGTACCTGTCC < 41bp 1 0.187470120849715 1 0.158618986606598 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110172951 chr1:110172949 nonsynonymous SNV 0.965 4 19 hm5C_associated_SNPs_28739 0 0 0 0 1 Cytosol 1 0.500242550745722 1 0.999514898508556 hm5C_site_29059 DeepMRMD:1;iRNA_m5C:0.999514898508556 29060 chr16 8735040 8735040 1 + A T LUSC 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGACGACCTCTGCACTGGTGTGTGTTTC < 41bp 1 0.212737487326899 1 0.524645268917084 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735040 synonymous SNV . 0 29 hm5C_associated_SNPs_28740 0 0 1 0 2 Cytosol 1 0.500231603073194 0.950709462165832 0.999536793853612 hm5C_site_29060 DeepMRMD:0.950709462165832;iRNA_m5C:0.999536793853612 29061 chr19 18888184 18888184 1 + C T LUSC 18888174 + 18888154 18888194 41 CCAGCCACCGAGGACACCTTCCGGATGGACCGCCTGTGAGC CCAGCCACCGAGGACACCTTCCGGATGGACTGCCTGTGAGC < 41bp 1 0.682682646992135 1 0.847551345825195 experiment 0.634634706015731 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18888174 chr19:18888184 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_28741 0 0 1 0 0 Cytosol 1 0.500231643918104 0.30489730834961 0.999536712163793 hm5C_site_29061 DeepMRMD:0.30489730834961;iRNA_m5C:0.999536712163793 29062 chr11 77301386 77301386 1 + G A LUSC 77301390 + 77301370 77301410 41 CATGTCCCCCGAGACGGGTGCGGTGAGGCTATTGGCTCAGC CATGTCCCCCGAGACGAGTGCGGTGAGGCTATTGGCTCAGC < 41bp 1 0.575319644206195 1 0.604187607765198 experiment 0.849360711587611 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AQP11 ENSG00000178301 CDS Human protein_coding chr11:77301390 chr11:77301386 nonsynonymous SNV 0.428 2 17 hm5C_associated_SNPs_28742 0 0 1 0 0 Ribosome 1 0.500231642098028 0.791624784469604 0.999536715803944 hm5C_site_29062 DeepMRMD:0.791624784469604;iRNA_m5C:0.999536715803944 29063 chr1 220970025 220970025 1 + G A LUSC 220970029 + 220970009 220970049 41 CAGGGACTGTGGCGAGGCCACCGCCCAGTGGATAACCAGCT CAGGGACTGTGGCGAGACCACCGCCCAGTGGATAACCAGCT < 41bp 1 0.284556670505576 1 0.191191494464874 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970029 chr1:220970025 nonsynonymous SNV 0.071 1 17 hm5C_associated_SNPs_28744 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29063 DeepMRMD:1;iRNA_m5C:0.999536712157815 29064 chr6 27833365 27833365 1 + G T LUSC 27833345 + 27833325 27833365 41 GAGCTGGCGGGCAACGCCGCCCGCGACAACAAGAAGACCCG GAGCTGGCGGGCAACGCCGCCCGCGACAACAAGAAGACCCT < 41bp 1 0.371225938651321 1 0.403038859367371 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AL ENSG00000198374 CDS Human other chr6:27833345 chr6:27833365 nonsynonymous SNV 0.969 0 41 hm5C_associated_SNPs_28747 0 0 1 0 0 exosome 1 0.500231643921149 1 0.999536712157701 hm5C_site_29064 DeepMRMD:1;iRNA_m5C:0.999536712157701 29065 chrX 53112250 53112250 1 + G T LUSC 53112248 + 53112228 53112268 41 TGAGGAGCAGCAGGAGGCGGCGGCGGCGGCGGAGGAGGAAG TGAGGAGCAGCAGGAGGCGGCGTCGGCGGCGGAGGAGGAAG < 41bp 1 0.467943103379352 1 0.54064804315567 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53112248 chrX:53112250 synonymous SNV . 0 23 hm5C_associated_SNPs_28748 0 0 0 0 0 chromatin 1 0.500231643921091 0.91870391368866 0.999536712157818 hm5C_site_29065 DeepMRMD:0.91870391368866;iRNA_m5C:0.999536712157818 29066 chr22 44330490 44330490 1 + T C LUSC 44330489 + 44330469 44330509 41 GCTTGCTTTGCTCACAGGTGCTGGGAGAGATATGCCTTCGA GCTTGCTTTGCTCACAGGTGCCGGGAGAGATATGCCTTCGA < 41bp 1 0.441143261910345 1 0.683570563793182 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44330489 chr22:44330490 nonsynonymous SNV 0.123 3 22 hm5C_associated_SNPs_28749 0 0 1 0 1 cytosol 1 0.500231623962968 0.632858872413636 0.999536752074065 hm5C_site_29066 DeepMRMD:0.632858872413636;iRNA_m5C:0.999536752074065 29067 chr3 47882519 47882519 1 + T G LUSC 47882499 + 47882479 47882519 41 TGCCCCCTACTTCCTGGCGGCAGCTGAATCCAGAGAGTATT TGCCCCCTACTTCCTGGCGGCAGCTGAATCCAGAGAGTATG < 41bp 1 0.29863764504426 1 0.102620035409927 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47882499 chr3:47882519 nonsynonymous SNV 0.978 2 41 hm5C_associated_SNPs_28750 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29067 DeepMRMD:1;iRNA_m5C:0.999536712157815 29068 chr11 34129835 34129835 1 + G A LUSC 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTAGCTGAGCGACAAAGATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.149036038243561 1 0.0933279395103455 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129835 synonymous SNV . 0 13 hm5C_associated_SNPs_28751 0 0 1 0 2 chromatin 1 0.500231645084356 1 0.999536709831288 hm5C_site_29068 DeepMRMD:1;iRNA_m5C:0.999536709831288 29069 chr16 53524160 53524160 1 + C G LUSC 53524180 + 53524160 53524200 41 CTGCCTTATTACGCCGTCTCCAAGATGTAGCTAATGACCGT GTGCCTTATTACGCCGTCTCCAAGATGTAGCTAATGACCGT < 41bp 1 0.69409484156117 1 0.278402119874954 experiment 0.611810316877661 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RBL2 ENSG00000103479 CDS Human protein_coding chr16:53524180 chr16:53524160 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_28752 0 0 1 0 0 Ribosome 1 0.500231644038853 1 0.999536711922293 hm5C_site_29069 DeepMRMD:1;iRNA_m5C:0.999536711922293 29070 chr20 60878660 60878660 1 + G T LUSC 60878643 + 60878623 60878663 41 GGATGACGACCTCAGGCGCGCTCTTTCCAAGCCTGGTGCCA GGATGACGACCTCAGGCGCGCTCTTTCCAAGCCTGGTTCCA < 41bp 1 0.146663540327695 1 0.0160151422023773 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60878643 chr20:60878660 synonymous SNV . 0 38 hm5C_associated_SNPs_28753 0 0 1 0 1 Ribosome 1 0.500231643945197 1 0.999536712109605 hm5C_site_29070 DeepMRMD:1;iRNA_m5C:0.999536712109605 29071 chr2 32724725 32724725 1 + A G LUSC 32724730 + 32724710 32724750 41 TATTTCTGCCGTGATAGAATCGGTTACATTTTTAGTGCACC TATTTCTGCCGTGATGGAATCGGTTACATTTTTAGTGCACC < 41bp 1 0.048154543831035 1 0.358141601085663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32724730 chr2:32724725 nonsynonymous SNV 0.994 3 16 hm5C_associated_SNPs_28754 0 0 1 0 0 Nucleus 1 0.50023164468666 1 0.999536710626681 hm5C_site_29071 DeepMRMD:1;iRNA_m5C:0.999536710626681 29072 chr17 37676267 37676267 1 + C T LUSC 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAAGTGGTGCACAGCTGAACAGACCCTACA < 41bp 1 0.194175355766236 1 0.154556840658188 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676267 nonsynonymous SNV 0.984 3 16 hm5C_associated_SNPs_28755 0 0 1 0 1 Nucleus 1 0.500231644253852 1 0.999536711492296 hm5C_site_29072 DeepMRMD:1;iRNA_m5C:0.999536711492296 29073 chr5 10411614 10411614 1 + C A LUSC 10411602 + 10411582 10411622 41 CCATACTCCAGCAGGGAGGGCCTGTTGGCTTTCAGCCTTAC CCATACTCCAGCAGGGAGGGCCTGTTGGCTTTAAGCCTTAC < 41bp 1 0.0803775062044949 1 0.0659275054931641 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10411602 chr5:10411614 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_28756 0 0 1 0 0 Nucleus 1 0.500231654368784 1 0.999536691262431 hm5C_site_29073 DeepMRMD:1;iRNA_m5C:0.999536691262431 29074 chr7 101892193 101892193 1 + C T LUSC 101892198 + 101892178 101892218 41 CCTTTTCGGCCTCCCCGAGGCCGCGGGCGCCCGGGACTCGC CCTTTTCGGCCTCCCTGAGGCCGCGGGCGCCCGGGACTCGC < 41bp 1 0.314808832144076 1 0.495519995689392 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101892198 chr7:101892193 synonymous SNV . 0 16 hm5C_associated_SNPs_28757 0 0 1 0 0 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29074 DeepMRMD:1;iRNA_m5C:0.999536712157815 29075 chr19 11474848 11474848 1 + C T LUSC 11474841 + 11474821 11474861 41 TGTCTCTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATT TGTCTCTTTGTCTCAGGAACCCGAGGTTTGCAGGCCGCATT < 41bp 1 0.488983603217972 1 0.884228348731995 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474841 chr19:11474848 nonsynonymous SNV 0.999 1 28 hm5C_associated_SNPs_28758 0 0 1 0 2 exosome 1 0.500231476788594 0.23154330253601 0.999537046422812 hm5C_site_29075 DeepMRMD:0.23154330253601;iRNA_m5C:0.999537046422812 29076 chr2 32768445 32768445 1 + C G LUSC 32768463 + 32768443 32768483 41 ATCAAGTCAGCAGTACAGACCATGTCTCCCATACCTGCCCA ATGAAGTCAGCAGTACAGACCATGTCTCCCATACCTGCCCA < 41bp 1 0.0942435461156025 1 0.220492660999298 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32768463 chr2:32768445 nonsynonymous SNV 0.992 1 3 hm5C_associated_SNPs_28759 0 0 1 0 0 Nucleus 1 0.500231643983177 1 0.999536712033645 hm5C_site_29076 DeepMRMD:1;iRNA_m5C:0.999536712033645 29077 chr19 49469158 49469158 1 + C G LUSC 49469156 + 49469136 49469176 41 ACCAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGGTA ACCAGCGTGGCGGCCGCGCTCTGTTCCAGGACATCAAGGTA < 41bp 1 0.462180996434863 1 0.237673819065094 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469156 chr19:49469158 synonymous SNV . 0 23 hm5C_associated_SNPs_28760 0 0 1 0 1 Cytosol 1 0.500231643921099 1 0.999536712157802 hm5C_site_29077 DeepMRMD:1;iRNA_m5C:0.999536712157802 29078 chr10 111967684 111967684 1 + G A LUSC 111967701 + 111967681 111967721 41 CCCGAGGACCCCGCTGGGGCCAAGCCCAGGTGCCCCTTCTC CCCAAGGACCCCGCTGGGGCCAAGCCCAGGTGCCCCTTCTC < 41bp 1 0.612307291675077 1 0.365791916847229 experiment 0.775385416649846 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MXI1 ENSG00000119950 CDS Human protein_coding chr10:111967701 chr10:111967684 nonsynonymous SNV 0.979 0 4 hm5C_associated_SNPs_28762 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29078 DeepMRMD:1;iRNA_m5C:0.999536712157815 29079 chr16 24818014 24818014 1 + G A LUSC 24817997 + 24817977 24818017 41 CACCATCTCAGCAGCAGCCACTCCATCAGCCAGCCATGAAG CACCATCTCAGCAGCAGCCACTCCATCAGCCAGCCATAAAG < 41bp 1 0.674853262510103 1 0.972663402557373 experiment 0.650293474979793 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24817997 chr16:24818014 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_28763 0 0 1 0 1 Nucleus 1 0.500231057661166 0.0546731948852539 0.999537884677669 hm5C_site_29079 DeepMRMD:0.0546731948852539;iRNA_m5C:0.999537884677669 29080 chr17 65905765 65905765 1 + A T LUSC 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG TATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG < 41bp 1 0.430477585224988 1 0.678572237491608 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905765 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_28764 0 0 1 0 1 Cytosol 1 0.500231643921093 0.642855525016784 0.999536712157815 hm5C_site_29080 DeepMRMD:0.642855525016784;iRNA_m5C:0.999536712157815 29081 chr19 41265392 41265392 1 + C T LUSC 41265404 + 41265384 41265424 41 GGCACCTTCGTGGAGCGGGACCGCAAGCGGGAGAAGAGGAA GGCACCTTTGTGGAGCGGGACCGCAAGCGGGAGAAGAGGAA < 41bp 1 0.436790454616598 1 0.0874173939228058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRPA ENSG00000077312 CDS Human protein_coding chr19:41265404 chr19:41265392 synonymous SNV . 0 9 hm5C_associated_SNPs_28765 0 0 1 0 0 Ribosome 1 0.500231643916426 1 0.999536712167149 hm5C_site_29081 DeepMRMD:1;iRNA_m5C:0.999536712167149 29082 chr11 47256931 47256931 1 + C T LUSC 47256916 + 47256896 47256936 41 AGTGGGACTGCCCCCTGGGCCTGATCCCGCACCCTCACCGT AGTGGGACTGCCCCCTGGGCCTGATCCCGCACCCTTACCGT < 41bp 1 0.456013722100746 1 0.0709480941295624 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256916 chr11:47256931 nonsynonymous SNV 0.940 4 36 hm5C_associated_SNPs_28766 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29082 DeepMRMD:1;iRNA_m5C:0.999536712157815 29083 chr5 21497230 21497230 1 + G C LUSC 21497215 + 21497195 21497235 41 TGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAAC TGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTCAGAAC < 41bp 1 0.305293217697913 1 0.804998934268951 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21497215 chr5:21497230 . . 0 36 hm5C_associated_SNPs_28767 0 0 1 0 1 unknown 1 0.500231862694979 0.390002131462098 0.999536274610041 hm5C_site_29083 DeepMRMD:0.390002131462098;iRNA_m5C:0.999536274610041 29084 chr2 211525340 211525340 1 + G T LUSC 211525357 + 211525337 211525377 41 ATTGGACCATCCCATAATTCCTGCTGACTATGTTGCAATTA ATTTGACCATCCCATAATTCCTGCTGACTATGTTGCAATTA < 41bp 1 0.298633874833015 1 0.0455035865306854 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211525357 chr2:211525340 nonsynonymous SNV 0.935 2 4 hm5C_associated_SNPs_28768 0 0 1 0 1 Nucleus 1 0.500231348365155 1 0.999537303269689 hm5C_site_29084 DeepMRMD:1;iRNA_m5C:0.999537303269689 29085 chr12 78510561 78510561 1 + C T LUSC 78510576 + 78510556 78510596 41 GATGACAGCAGTTCAGTGAGCAGTGGTCTCAGTGACACCCT GATGATAGCAGTTCAGTGAGCAGTGGTCTCAGTGACACCCT < 41bp 1 0.388642009066905 1 0.67292058467865 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAV3 ENSG00000067798 CDS Human protein_coding chr12:78510576 chr12:78510561 synonymous SNV . 0 6 hm5C_associated_SNPs_28770 0 0 0 0 1 Nucleus 1 0.500231643925504 0.6541588306427 0.999536712148992 hm5C_site_29085 DeepMRMD:0.6541588306427;iRNA_m5C:0.999536712148992 29086 chr18 56063416 56063416 1 + T C LUSC 56063414 + 56063394 56063434 41 TGCAGCTTTAATCGCCTTGACTTACCTCCATATGAAACCTT TGCAGCTTTAATCGCCTTGACTCACCTCCATATGAAACCTT < 41bp 1 0.107983025272107 1 0.13838467001915 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:56063414 chr18:56063416 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_28771 0 0 1 0 1 Cytosol 1 0.500231643921088 1 0.999536712157824 hm5C_site_29086 DeepMRMD:1;iRNA_m5C:0.999536712157824 29087 chr2 177016524 177016524 1 + C A LUSC 177016539 + 177016519 177016559 41 CACGGCCCGACTTCGGTGAGCAGCCTTTCGGAGGCAGCGGC CACGGACCGACTTCGGTGAGCAGCCTTTCGGAGGCAGCGGC < 41bp 1 0.625700527089313 1 0.145741671323776 experiment 0.748598945821374 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HOXD4 ENSG00000170166 CDS Human protein_coding chr2:177016539 chr2:177016524 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_28772 0 0 0 0 0 exosome 1 0.500231642263806 1 0.999536715472388 hm5C_site_29087 DeepMRMD:1;iRNA_m5C:0.999536715472388 29088 chr14 39650827 39650827 1 + G T LUSC 39650825 + 39650805 39650845 41 GTAGAAGTCGGAGTAGGGGCCGGGGACATAATAGAGATAGA GTAGAAGTCGGAGTAGGGGCCGTGGACATAATAGAGATAGA < 41bp 1 0.445226145596997 1 0.761737525463104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39650825 chr14:39650827 synonymous SNV . 0 23 hm5C_associated_SNPs_28773 0 0 1 0 0 Nucleus 1 0.500231643921053 0.476524949073792 0.999536712157894 hm5C_site_29088 DeepMRMD:0.476524949073792;iRNA_m5C:0.999536712157894 29089 chr10 17277176 17277176 1 + C A LUSC 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTCACTGGAACGCCAGATGCGTGAAATGGAAGA < 41bp 1 0.378437876230309 1 0.528266727924347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277176 synonymous SNV . 0 12 hm5C_associated_SNPs_28775 0 0 1 0 1 Ribosome 1 0.500231643922843 0.943466544151306 0.999536712154313 hm5C_site_29089 DeepMRMD:0.943466544151306;iRNA_m5C:0.999536712154313 29090 chr10 17277176 17277176 1 + C A LUSC 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTCACTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT < 41bp 1 0.637026744585894 1 0.258913487195969 experiment 0.725946510828213 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277176 synonymous SNV . 0 5 hm5C_associated_SNPs_28776 0 0 1 0 1 Ribosome 1 0.500231647202823 1 0.999536705594353 hm5C_site_29090 DeepMRMD:1;iRNA_m5C:0.999536705594353 29091 chr10 17277177 17277177 1 + C A LUSC 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTCCATGGAACGCCAGATGCGTGA < 41bp 1 0.317919870790732 1 0.209300428628922 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277177 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_28777 0 0 1 0 1 Ribosome 1 0.500231692997639 1 0.999536614004721 hm5C_site_29091 DeepMRMD:1;iRNA_m5C:0.999536614004721 29092 chr10 17277177 17277177 1 + C A LUSC 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTCCATGGAACGCCAGATGCGTGAAATGGAAGA < 41bp 1 0.391843177698134 1 0.445963084697723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277177 nonsynonymous SNV 0.993 4 13 hm5C_associated_SNPs_28778 0 0 1 0 1 Ribosome 1 0.50023164553459 1 0.99953670893082 hm5C_site_29092 DeepMRMD:1;iRNA_m5C:0.99953670893082 29093 chr10 17277177 17277177 1 + C A LUSC 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTCCATGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT < 41bp 1 0.647430558412424 1 0.260730296373367 experiment 0.705138883175153 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277177 nonsynonymous SNV 0.993 4 6 hm5C_associated_SNPs_28779 0 0 1 0 1 Ribosome 1 0.500231646576151 1 0.999536706847697 hm5C_site_29093 DeepMRMD:1;iRNA_m5C:0.999536706847697 29094 chr12 118465787 118465787 1 + T A LUSC 118465804 + 118465784 118465824 41 GGGTTGGCACTGCATGATATCCTGACAGAGATACACTTGTT GGGATGGCACTGCATGATATCCTGACAGAGATACACTTGTT < 41bp 1 0.479775560931385 1 0.14996749162674 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RFC5 ENSG00000111445 CDS Human protein_coding chr12:118465804 chr12:118465787 nonsynonymous SNV 0.770 2 4 hm5C_associated_SNPs_28780 0 0 1 0 3 Ribosome 1 0.500233843725952 1 0.999532312548095 hm5C_site_29094 DeepMRMD:1;iRNA_m5C:0.999532312548095 29095 chr1 145509204 145509204 1 + G T LUSC 145509191 + 145509171 145509211 41 GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACTTCGCTGA < 41bp 1 0.380128260094311 1 0.293040245771408 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509191 chr1:145509204 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_28781 0 0 0 0 1 Ribosome 1 0.500231643921115 1 0.999536712157769 hm5C_site_29095 DeepMRMD:1;iRNA_m5C:0.999536712157769 29096 chr1 145509204 145509204 1 + G T LUSC 145509206 + 145509186 145509226 41 GAAGTCCAGACCGGAGACGTCGCTGACAGGTCCTCTGTTGT GAAGTCCAGACCGGAGACTTCGCTGACAGGTCCTCTGTTGT < 41bp 1 0.181182153353549 1 0.218974202871323 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM8A ENSG00000131795 CDS Human other chr1:145509206 chr1:145509204 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_28782 0 0 0 0 1 Ribosome 1 0.500231644434233 1 0.999536711131534 hm5C_site_29096 DeepMRMD:1;iRNA_m5C:0.999536711131534 29097 chrX 153692007 153692007 1 + C G LUSC 153692001 + 153691981 153692021 41 GCCTGCCTGGGCTCCGGGGACCCGCACTGTGGTTGGTGTGT GCCTGCCTGGGCTCCGGGGACCCGCAGTGTGGTTGGTGTGT < 41bp 1 0.126694935521625 1 0.123307377099991 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153692001 chrX:153692007 nonsynonymous SNV 0.864 4 27 hm5C_associated_SNPs_28784 0 0 1 0 2 Endoplasmic reticulum 1 0.500231638573716 1 0.999536722852568 hm5C_site_29097 DeepMRMD:1;iRNA_m5C:0.999536722852568 29098 chr20 57289620 57289620 1 + G A LUSC 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCAAGACAACAGCCCCAGCTCCTGTGCTGGCCTC < 41bp 1 0.383545256203201 1 0.352464318275452 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289620 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_28785 0 0 1 0 1 cytosol 1 0.500231643506801 1 0.999536712986398 hm5C_site_29098 DeepMRMD:1;iRNA_m5C:0.999536712986398 29099 chr11 86663299 86663299 1 + C A LUSC 86663294 - 86663274 86663314 41 CCAGGTGATGAAGAGGTGCCCTTACCTCACAAAACCCCCAT CCAGGTGATGAAGAGTTGCCCTTACCTCACAAAACCCCCAT < 41bp 1 0.168677429979489 1 0.0557084679603577 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZD4 ENSG00000174804 CDS Human protein_coding chr11:86663294 chr11:86663299 nonsynonymous SNV 0.997 0 16 hm5C_associated_SNPs_28786 0 0 1 0 0 Ribosome 1 0.500656059377589 1 0.998687881244823 hm5C_site_29099 DeepMRMD:1;iRNA_m5C:0.998687881244823 29100 chr3 49212176 49212176 1 + G C LUSC 49212179 + 49212159 49212199 41 CCAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGT CCAATTCCATTGACAGGCGGCCGCCAGGGCAAGCTCCCGGT < 41bp 1 0.071821355432354 1 0.138374000787735 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212179 chr3:49212176 synonymous SNV . 0 18 hm5C_associated_SNPs_28788 0 0 1 0 1 Cytosol 1 0.500231643917899 1 0.999536712164203 hm5C_site_29100 DeepMRMD:1;iRNA_m5C:0.999536712164203 29101 chr3 49212176 49212176 1 + G C LUSC 49212180 + 49212160 49212200 41 CAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGTG CAATTCCATTGACAGGCGGCCGCCAGGGCAAGCTCCCGGTG < 41bp 1 0.674526883604308 1 0.363917112350464 experiment 0.650946232791385 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212180 chr3:49212176 synonymous SNV . 0 17 hm5C_associated_SNPs_28789 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29101 DeepMRMD:1;iRNA_m5C:0.999536712157815 29102 chr11 119206489 119206489 1 + C T LUSC 119206474 + 119206454 119206494 41 CTAGCCCTGGAGCTGCTGGCCTCAGCTGCCCGCCTCCTGGC CTAGCCCTGGAGCTGCTGGCCTCAGCTGCCCGCCTTCTGGC < 41bp 1 0.576460162076958 1 0.701206982135773 experiment 0.847079675846084 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF26 ENSG00000173456 CDS Human protein_coding chr11:119206474 chr11:119206489 synonymous SNV . 0 36 hm5C_associated_SNPs_28790 0 0 1 0 0 chromatin 1 0.500231634123453 0.597586035728454 0.999536731753094 hm5C_site_29102 DeepMRMD:0.597586035728454;iRNA_m5C:0.999536731753094 29103 chr5 52096371 52096371 1 + A G LUSC 52096386 + 52096366 52096406 41 GGTACAGACAGAGTCCTCCACGGGCAGCGTGGGCAGCAACC GGTACGGACAGAGTCCTCCACGGGCAGCGTGGGCAGCAACC < 41bp 1 0.693055345245252 1 0.284496366977692 experiment 0.613889309509495 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PELO ENSG00000152684 CDS Human protein_coding chr5:52096386 chr5:52096371 nonsynonymous SNV 0.995 0 6 hm5C_associated_SNPs_28791 0 0 1 0 0 Ribosome 1 0.500231681196842 1 0.999536637606317 hm5C_site_29103 DeepMRMD:1;iRNA_m5C:0.999536637606317 29104 chr2 217364720 217364720 1 + A G LUSC 217364737 + 217364717 217364757 41 TGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACAAGTG TGCGTGAAGACAGTGGCTGGCGGTGCCTGGACGTACAAGTG < 41bp 1 0.667778083923243 1 0.496348172426224 experiment 0.664443832153514 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364737 chr2:217364720 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_28794 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29104 DeepMRMD:1;iRNA_m5C:0.999536712157815 29105 chr9 95797857 95797857 1 + G T LUSC 95797848 + 95797828 95797868 41 GGGCCCTGCAGCTTCAGGTCCCTATGGGCGCAGCTGCTCCG GGGCCCTGCAGCTTCAGGTCCCTATGGGCTCAGCTGCTCCG < 41bp 1 0.0575182246715292 1 0.105811446905136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGD3 ENSG00000127084 CDS Human protein_coding chr9:95797848 chr9:95797857 nonsynonymous SNV 0.000 1 30 hm5C_associated_SNPs_28795 0 0 0 0 0 exosome 1 0.500231643922509 1 0.999536712154983 hm5C_site_29105 DeepMRMD:1;iRNA_m5C:0.999536712154983 29106 chr9 137987784 137987784 1 + G A LUSC 137987790 + 137987770 137987810 41 TACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC TACGTGGAGAAGATAGAGAACCAAATGAAAGGACTGGAGTC < 41bp 1 0.272489447607181 1 0.189847707748413 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987790 chr9:137987784 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_28796 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_29106 DeepMRMD:1;iRNA_m5C:0.999536712157815 29107 chr9 137987784 137987784 1 + G A LUSC 137987791 + 137987771 137987811 41 ACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC ACGTGGAGAAGATAGAGAACCAAATGAAAGGACTGGAGTCC < 41bp 1 0.325579898107559 1 0.547200918197632 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987791 chr9:137987784 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_28797 0 0 1 0 2 Endoplasmic reticulum 1 0.500231695480957 0.905598163604736 0.999536609038085 hm5C_site_29107 DeepMRMD:0.905598163604736;iRNA_m5C:0.999536609038085 29108 chr6 37298906 37298906 1 + C A LUSC 37298920 + 37298900 37298940 41 CAGACTCAAGTACATGTTTGCCGATGCCCCAAATCACTACC CAGACTAAAGTACATGTTTGCCGATGCCCCAAATCACTACC < 41bp 1 0.198789314257302 1 0.109412044286728 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37298920 chr6:37298906 synonymous SNV . 0 7 hm5C_associated_SNPs_28798 0 0 0 0 0 chromatin 1 0.50023164386395 1 0.9995367122721 hm5C_site_29108 DeepMRMD:1;iRNA_m5C:0.9995367122721 29109 chr1 37948064 37948064 1 + G A LUSC 37948073 + 37948053 37948093 41 CCCACTGGGCCGGCACGGGCCCAGCCTGGACAACTTCCTGC CCCACTGGGCCAGCACGGGCCCAGCCTGGACAACTTCCTGC < 41bp 1 0.119938437895478 1 0.065541535615921 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948073 chr1:37948064 nonsynonymous SNV 0.973 4 12 hm5C_associated_SNPs_28799 0 0 0 0 2 Nucleus 1 0.500231638631746 1 0.999536722736507 hm5C_site_29109 DeepMRMD:1;iRNA_m5C:0.999536722736507 29110 chr1 37948064 37948064 1 + G A LUSC 37948074 + 37948054 37948094 41 CCACTGGGCCGGCACGGGCCCAGCCTGGACAACTTCCTGCG CCACTGGGCCAGCACGGGCCCAGCCTGGACAACTTCCTGCG < 41bp 1 0.323306286275146 1 0.143919765949249 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948074 chr1:37948064 nonsynonymous SNV 0.973 4 11 hm5C_associated_SNPs_28800 0 0 0 0 2 Nucleus 1 0.500231479689407 1 0.999537040621185 hm5C_site_29110 DeepMRMD:1;iRNA_m5C:0.999537040621185 29111 chr8 145150845 145150845 1 + C A LUSC 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTAGGCTG < 41bp 1 0.481624729738071 1 0.407492697238922 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150845 stopgain 0.941 0 36 hm5C_associated_SNPs_28801 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29111 DeepMRMD:1;iRNA_m5C:0.999536712157815 29112 chr3 126751332 126751332 1 + G C LUSC 126751338 + 126751318 126751358 41 TCGGTGGTGGCCCAGACCTTCATGGACTCCTGCTCCACCTC TCGGTGGTGGCCCACACCTTCATGGACTCCTGCTCCACCTC < 41bp 1 0.358157120133248 1 0.306935846805573 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751338 chr3:126751332 nonsynonymous SNV 0.997 4 15 hm5C_associated_SNPs_28803 0 0 1 0 0 Ribosome 1 0.500231643922802 1 0.999536712154396 hm5C_site_29112 DeepMRMD:1;iRNA_m5C:0.999536712154396 29113 chr12 57599412 57599412 1 + A T LUSC 57599419 + 57599399 57599439 41 CGGCCACCTCTGCAGCTGCGCTCGGAACTTCATGAAGACGC CGGCCACCTCTGCTGCTGCGCTCGGAACTTCATGAAGACGC < 41bp 1 0.252288305351353 1 0.259578108787537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599419 chr12:57599412 nonsynonymous SNV 0.999 4 14 hm5C_associated_SNPs_28806 0 0 0 0 2 Exosome 1 0.500231643919734 1 0.999536712160533 hm5C_site_29113 DeepMRMD:1;iRNA_m5C:0.999536712160533 29114 chr19 14561819 14561819 1 + G A LUSC 14561839 + 14561819 14561859 41 GAAGAGCTCGCTGCGGCCTCCTCCGCTGCCTTCAGCACCCG AAAGAGCTCGCTGCGGCCTCCTCCGCTGCCTTCAGCACCCG < 41bp 1 0.627342048651754 1 0.346896767616272 experiment 0.745315902696492 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561839 chr19:14561819 nonsynonymous SNV 0.694 2 1 hm5C_associated_SNPs_28807 0 0 1 0 0 Ribosome 1 0.500231643911485 1 0.99953671217703 hm5C_site_29114 DeepMRMD:1;iRNA_m5C:0.99953671217703 29115 chr8 25323754 25323754 1 + G T LUSC 25323752 + 25323732 25323772 41 ACGAATATCAGCCTTCCAGTCAGCTTTTCACTCCATAAAGG ACGAATATCAGCCTTCCAGTCATCTTTTCACTCCATAAAGG < 41bp 1 0.101758552045022 1 0.120782822370529 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDCA2 ENSG00000184661 CDS Human protein_coding chr8:25323752 chr8:25323754 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_28808 0 0 1 0 2 Nucleus 1 0.500231644368425 1 0.99953671126315 hm5C_site_29115 DeepMRMD:1;iRNA_m5C:0.99953671126315 29116 chrX 153688715 153688715 1 + G T LUSC 153688731 + 153688711 153688751 41 TGCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGC TGCGTGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGC < 41bp 1 0.0608850926686116 1 0.0443868041038513 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688731 chrX:153688715 synonymous SNV . 0 5 hm5C_associated_SNPs_28809 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644678428 1 0.999536710643145 hm5C_site_29116 DeepMRMD:1;iRNA_m5C:0.999536710643145 29117 chrX 153688715 153688715 1 + G T LUSC 153688732 + 153688712 153688752 41 GCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCT GCGTGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCT < 41bp 1 0.0263817331814754 1 0.0302315950393677 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688732 chrX:153688715 synonymous SNV . 0 4 hm5C_associated_SNPs_28810 0 0 0 0 0 Endoplasmic reticulum 1 0.500231595206528 1 0.999536809586944 hm5C_site_29117 DeepMRMD:1;iRNA_m5C:0.999536809586944 29118 chrX 153688715 153688715 1 + G T LUSC 153688733 + 153688713 153688753 41 CGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCTG CGTGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCTG < 41bp 1 0.296387110663632 1 0.157805919647217 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688733 chrX:153688715 synonymous SNV . 0 3 hm5C_associated_SNPs_28811 0 0 0 0 0 Endoplasmic reticulum 1 0.500231821641362 1 0.999536356717275 hm5C_site_29118 DeepMRMD:1;iRNA_m5C:0.999536356717275 29119 chr20 43545460 43545460 1 + G T LUSC 43545459 + 43545439 43545479 41 CATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC CATTTTGAGACCCATGAGGCCTCACAGCAGGCCATCAACAC < 41bp 1 0.198485251841933 1 0.0210385918617249 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545459 chr20:43545460 nonsynonymous SNV 0.062 4 22 hm5C_associated_SNPs_28812 0 0 1 1 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_29119 DeepMRMD:1;iRNA_m5C:0.999536712157818 29120 chr8 25323755 25323755 1 + C A LUSC 25323752 + 25323732 25323772 41 ACGAATATCAGCCTTCCAGTCAGCTTTTCACTCCATAAAGG ACGAATATCAGCCTTCCAGTCAGATTTTCACTCCATAAAGG < 41bp 1 0.248066139363682 1 0.474291384220123 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDCA2 ENSG00000184661 CDS Human protein_coding chr8:25323752 chr8:25323755 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_28813 0 0 1 0 2 Nucleus 1 0.500231643909452 1 0.999536712181097 hm5C_site_29120 DeepMRMD:1;iRNA_m5C:0.999536712181097 29121 chr1 110754721 110754721 1 + C A LUSC 110754733 + 110754713 110754753 41 CATGGCGCCGGGTCTGGGGGCTGCCGCGGCTGGCAGCCCCG CATGGCGCAGGGTCTGGGGGCTGCCGCGGCTGGCAGCCCCG < 41bp 1 0.451846504441947 1 0.255259215831757 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110754733 chr1:110754721 synonymous SNV . 0 9 hm5C_associated_SNPs_28814 0 0 0 0 0 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_29121 DeepMRMD:1;iRNA_m5C:0.999536712157818 29122 chr1 110754721 110754721 1 + C A LUSC 110754736 + 110754716 110754756 41 GGCGCCGGGTCTGGGGGCTGCCGCGGCTGGCAGCCCCGCAT GGCGCAGGGTCTGGGGGCTGCCGCGGCTGGCAGCCCCGCAT < 41bp 1 0.696942998699051 1 0.651046395301819 experiment 0.606114002601898 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110754736 chr1:110754721 synonymous SNV . 0 6 hm5C_associated_SNPs_28815 0 0 0 0 0 Nucleus 1 0.500231643921093 0.697907209396362 0.999536712157815 hm5C_site_29122 DeepMRMD:0.697907209396362;iRNA_m5C:0.999536712157815 29123 chr6 110059612 110059612 1 + G A LUSC 110059608 + 110059588 110059628 41 ATATAATTAAAAGTACTGTGCATCGTGACTGGCTTTTGTAT ATATAATTAAAAGTACTGTGCATCATGACTGGCTTTTGTAT < 41bp 1 0.157109209778778 1 0.0423125028610229 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110059608 chr6:110059612 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_28816 0 0 1 0 2 Cytosol 1 0.500231473485939 1 0.999537053028122 hm5C_site_29123 DeepMRMD:1;iRNA_m5C:0.999537053028122 29124 chr6 27101012 27101012 1 + G A LUSC 27101032 + 27101012 27101052 41 GGTGCTGGAGTACCTGACCGCCGAGATCCTGGAACTGGCGG AGTGCTGGAGTACCTGACCGCCGAGATCCTGGAACTGGCGG < 41bp 1 0.581861967371103 1 0.757267832756042 experiment 0.836276065257795 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101032 chr6:27101012 synonymous SNV . 0 1 hm5C_associated_SNPs_28817 0 0 1 0 0 Ribosome 1 0.500231643921093 0.485464334487916 0.999536712157814 hm5C_site_29124 DeepMRMD:0.485464334487916;iRNA_m5C:0.999536712157814 29125 chr6 130381241 130381241 1 + G T LUSC 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGTA < 41bp 1 0.525213394661833 1 0.239803284406662 experiment 0.949573210676334 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381241 nonsynonymous SNV 0.858 4 40 hm5C_associated_SNPs_28818 0 0 1 0 2 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_29125 DeepMRMD:1;iRNA_m5C:0.999536712157815 29126 chr6 168363186 168363186 1 + G A LUSC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAAGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.259682052764914 1 0.541389644145966 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363186 nonsynonymous SNV 0.017 1 5 hm5C_associated_SNPs_28819 0 0 1 0 3 unknown 1 0.500231643672469 0.917220711708068 0.999536712655063 hm5C_site_29126 DeepMRMD:0.917220711708068;iRNA_m5C:0.999536712655063 29127 chr1 55524240 55524240 1 + G A LUSC 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCGTCACCCGCTGCGCCCCAG < 41bp 1 0.108686586603327 1 0.130664527416229 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524240 nonsynonymous SNV 0.003 2 26 hm5C_associated_SNPs_28821 0 0 1 0 2 Nucleus 1 0.500230887575075 1 0.999538224849849 hm5C_site_29127 DeepMRMD:1;iRNA_m5C:0.999538224849849 29128 chr1 55524240 55524240 1 + G A LUSC 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCGTCACCCGCTGCGCCCCAGA < 41bp 1 0.661750148321785 1 0.413445472717285 experiment 0.676499703356431 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524240 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_28822 0 0 1 0 2 Nucleus 1 0.500219322610864 1 0.999561354778273 hm5C_site_29128 DeepMRMD:1;iRNA_m5C:0.999561354778273 29129 chr6 26124559 26124559 1 + C T LUSC 26124556 + 26124536 26124576 41 TTCCCGGTGGGCCGAGTGCACCGCCTGCTCCGTAAAGGCAA TTCCCGGTGGGCCGAGTGCACCGTCTGCTCCGTAAAGGCAA < 41bp 1 0.394717779917227 1 0.0895547568798065 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AC ENSG00000180573 CDS Human protein_coding chr6:26124556 chr6:26124559 synonymous SNV . 0 24 hm5C_associated_SNPs_28823 0 0 1 0 0 Ribosome 1 0.500232474723162 1 0.999535050553676 hm5C_site_29129 DeepMRMD:1;iRNA_m5C:0.999535050553676 29130 chr22 32881142 32881142 1 + G A LUSC 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGCGAGAGCAGCTCCGCTACTCTCACCTGTGTGC < 41bp 1 0.39714249794176 1 0.109522312879562 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881142 nonsynonymous SNV 0.942 1 14 hm5C_associated_SNPs_28824 0 0 1 0 2 chromatin 1 0.500231643921088 1 0.999536712157824 hm5C_site_29130 DeepMRMD:1;iRNA_m5C:0.999536712157824 29131 chr5 10411589 10411589 1 + C T LUSC 10411587 + 10411567 10411607 41 ATGCAGCCCACCAAGCCATACTCCAGCAGGGAGGGCCTGTT ATGCAGCCCACCAAGCCATACTTCAGCAGGGAGGGCCTGTT < 41bp 1 0.506221522037827 1 0.290201544761658 experiment 0.987556955924346 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10411587 chr5:10411589 synonymous SNV . 0 23 hm5C_associated_SNPs_28825 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29131 DeepMRMD:1;iRNA_m5C:0.999536712157815 29132 chr5 10411589 10411589 1 + C T LUSC 10411602 + 10411582 10411622 41 CCATACTCCAGCAGGGAGGGCCTGTTGGCTTTCAGCCTTAC CCATACTTCAGCAGGGAGGGCCTGTTGGCTTTCAGCCTTAC < 41bp 1 0.101171279053879 1 0.0533475577831268 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10411602 chr5:10411589 synonymous SNV . 0 8 hm5C_associated_SNPs_28826 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29132 DeepMRMD:1;iRNA_m5C:0.999536712157815 29133 chr16 22271802 22271802 1 + C T LUSC 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGCCAGTGTTCAGTGATCTCGATAACATGGC < 41bp 1 0.405819127709882 1 0.428472995758057 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271802 synonymous SNV . 0 27 hm5C_associated_SNPs_28827 0 0 1 0 2 Nucleus 1 0.500231623751597 1 0.999536752496806 hm5C_site_29133 DeepMRMD:1;iRNA_m5C:0.999536752496806 29134 chr1 218458675 218458675 1 + C T LUSC 218458666 + 218458646 218458686 41 CCGGCGCAGAAAAATGGCAGCCGCCGCTCCGGACTCACGTG CCGGCGCAGAAAAATGGCAGCCGCCGCTCTGGACTCACGTG < 41bp 1 0.287311282873369 1 0.149547934532166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RRP15 ENSG00000067533 CDS Human protein_coding chr1:218458666 chr1:218458675 nonsynonymous SNV 0.000 0 30 hm5C_associated_SNPs_28828 0 0 1 0 0 Ribosome 1 0.500231643920635 1 0.99953671215873 hm5C_site_29134 DeepMRMD:1;iRNA_m5C:0.99953671215873 29135 chr17 74078056 74078056 1 + C A LUSC 74078053 - 74078033 74078073 41 GGCTGGGGCCGCTCTTGGCCCCAAGGTTGCCCCGGGCCAGC GGCTGGGGCCGCTCTTGTCCCCAAGGTTGCCCCGGGCCAGC < 41bp 1 0.55170785957733 1 0.504011750221252 experiment 0.896584280845339 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZACN ENSG00000186919 CDS Human protein_coding chr17:74078053 chr17:74078056 nonsynonymous SNV 0.000 1 18 hm5C_associated_SNPs_28829 0 0 0 0 0 chromatin 1 0.500231643921099 0.991976499557496 0.999536712157802 hm5C_site_29135 DeepMRMD:0.991976499557496;iRNA_m5C:0.999536712157802 29136 chr17 74078056 74078056 1 + C A LUSC 74078054 - 74078034 74078074 41 GGGCTGGGGCCGCTCTTGGCCCCAAGGTTGCCCCGGGCCAG GGGCTGGGGCCGCTCTTGTCCCCAAGGTTGCCCCGGGCCAG < 41bp 1 0.681346906551027 1 0.333330720663071 experiment 0.637306186897947 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZACN ENSG00000186919 CDS Human protein_coding chr17:74078054 chr17:74078056 nonsynonymous SNV 0.000 1 19 hm5C_associated_SNPs_28830 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_29136 DeepMRMD:1;iRNA_m5C:0.999536712157815 29137 chr17 74078056 74078056 1 + C A LUSC 74078064 - 74078044 74078084 41 TCTCGGGGCTGGGCTGGGGCCGCTCTTGGCCCCAAGGTTGC TCTCGGGGCTGGGCTGGGGCCGCTCTTGTCCCCAAGGTTGC < 41bp 1 0.542493922611544 1 0.180176168680191 experiment 0.915012154776911 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZACN ENSG00000186919 CDS Human protein_coding chr17:74078064 chr17:74078056 nonsynonymous SNV 0.000 1 29 hm5C_associated_SNPs_28832 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_29137 DeepMRMD:1;iRNA_m5C:0.999536712157815 29138 chr17 74078056 74078056 1 + C A LUSC 74078065 - 74078045 74078085 41 CTCTCGGGGCTGGGCTGGGGCCGCTCTTGGCCCCAAGGTTG CTCTCGGGGCTGGGCTGGGGCCGCTCTTGTCCCCAAGGTTG < 41bp 1 0.505654907143331 1 0.117147833108902 experiment 0.988690185713338 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZACN ENSG00000186919 CDS Human protein_coding chr17:74078065 chr17:74078056 nonsynonymous SNV 0.000 1 30 hm5C_associated_SNPs_28833 0 0 0 0 0 chromatin 1 0.500231643921392 1 0.999536712157216 hm5C_site_29138 DeepMRMD:1;iRNA_m5C:0.999536712157216 29139 chr2 27157544 27157544 1 + G A LUSC 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCGGCTGCCTATGTCACGATGCCTCCCCTGAGACTGG < 41bp 1 0.254524592870026 1 0.777369737625122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157544 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_28834 0 0 0 0 2 Ribosome 1 0.500231643921111 0.445260524749756 0.999536712157777 hm5C_site_29139 DeepMRMD:0.445260524749756;iRNA_m5C:0.999536712157777 29140 chrX 73046929 73046929 1 + G T LUSC 73046915 - 73046895 73046935 41 AGAAGGCCCAAAGTATAAGACAGATGGTTTGAGACTTGAGA AGAAGGACCAAAGTATAAGACAGATGGTTTGAGACTTGAGA < 41bp 1 0.198331327339369 1 0.405668944120407 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046915 chrX:73046929 . . 0 7 hm5C_associated_SNPs_28835 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29140 DeepMRMD:1;iRNA_m5C:0.999536712157815 29141 chr1 107600266 107600266 1 + C T LUSC 107600256 + 107600236 107600276 41 AGTCGGAGAAACCCCTGGTGCTGTCCACCTCGCCTTTTCAC AGTCGGAGAAACCCCTGGTGCTGTCCACCTTGCCTTTTCAC < 41bp 1 0.183602266389236 1 0.264712393283844 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT6 ENSG00000198890 CDS Human protein_coding chr1:107600256 chr1:107600266 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_28836 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29141 DeepMRMD:1;iRNA_m5C:0.999536712157815 29142 chr4 57180260 57180260 1 + G C LUSC 57180277 + 57180257 57180297 41 AACGGACACCCAGGCGAGGACAAGCCAACGTGGCACGAAGA AACCGACACCCAGGCGAGGACAAGCCAACGTGGCACGAAGA < 41bp 1 0.366733790988337 1 0.545808672904968 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180277 chr4:57180260 nonsynonymous SNV 0.889 3 4 hm5C_associated_SNPs_28837 0 0 0 0 1 cytosol 1 0.500231643921054 0.908382654190064 0.999536712157891 hm5C_site_29142 DeepMRMD:0.908382654190064;iRNA_m5C:0.999536712157891 29143 chr5 10417441 10417441 1 + G C LUSC 10417426 + 10417406 10417446 41 GTGCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCT GTGCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGCCTCCT < 41bp 1 0.180667778000797 1 0.148254930973053 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10417426 chr5:10417441 synonymous SNV . 0 36 hm5C_associated_SNPs_28838 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29143 DeepMRMD:1;iRNA_m5C:0.999536712157815 29144 chr5 10417441 10417441 1 + G C LUSC 10417428 + 10417408 10417448 41 GCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCTGT GCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGCCTCCTGT < 41bp 1 0.276218453880259 1 0.0991118848323822 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10417428 chr5:10417441 synonymous SNV . 0 34 hm5C_associated_SNPs_28839 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29144 DeepMRMD:1;iRNA_m5C:0.999536712157815 29145 chr11 94554932 94554932 1 + G C LUSC 94554949 + 94554929 94554969 41 ACCGGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT ACCCGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT < 41bp 1 0.322952717085408 1 0.0810353755950928 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94554949 chr11:94554932 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_28840 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_29145 DeepMRMD:1;iRNA_m5C:0.999536712157815 29146 chr5 140789620 140789620 1 + C T LUSC 140789623 + 140789603 140789643 41 AGTGAGCCCGGACTCTTCAGCCTGGGGCTGCGCACTGGGGA AGTGAGCCCGGACTCTTTAGCCTGGGGCTGCGCACTGGGGA < 41bp 1 0.354050436180431 1 0.284069061279297 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHGB6 ENSG00000253305 CDS Human protein_coding chr5:140789623 chr5:140789620 synonymous SNV . 0 18 hm5C_associated_SNPs_28841 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29146 DeepMRMD:1;iRNA_m5C:0.999536712157815 29147 chr19 41306706 41306706 1 + C T LUSC 41306701 + 41306681 41306721 41 CACCTCTACCACTGCCAGCCCTCTTCGGGACGGTTTTGGCG CACCTCTACCACTGCCAGCCCTCTTTGGGACGGTTTTGGCG < 41bp 1 0.162557195921336 1 0.722496867179871 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41306701 chr19:41306706 nonsynonymous SNV 0.973 1 26 hm5C_associated_SNPs_28843 0 0 1 0 0 chromatin 1 0.500231643921092 0.555006265640258 0.999536712157815 hm5C_site_29147 DeepMRMD:0.555006265640258;iRNA_m5C:0.999536712157815 29148 chr6 160448238 160448238 1 + C G LUSC 160448218 + 160448198 160448238 41 TGTAATACATGATTTTCAGACACACTACGAGACCCAGGTTC TGTAATACATGATTTTCAGACACACTACGAGACCCAGGTTG < 41bp 1 0.11560686549958 1 0.166890859603882 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160448218 chr6:160448238 stopgain 0.019 0 41 hm5C_associated_SNPs_28845 0 0 1 0 1 Endoplasmic reticulum 1 0.500231652274971 1 0.999536695450058 hm5C_site_29148 DeepMRMD:1;iRNA_m5C:0.999536695450058 29149 chr3 16312549 16312549 1 + C T LUSC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTTAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.270730204384131 1 0.114330470561981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312549 synonymous SNV . 0 8 hm5C_associated_SNPs_28846 0 0 0 19 2 Ribosome 1 0.500660169935731 1 0.998679660128539 hm5C_site_29149 DeepMRMD:1;iRNA_m5C:0.998679660128539 29150 chrX 70674030 70674030 1 + T A LUSC 70674049 + 70674029 70674069 41 GTCAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGT GACAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGT < 41bp 1 0.569987763409717 1 0.853201925754547 experiment 0.860024473180566 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF1 ENSG00000147133 CDS Human protein_coding chrX:70674049 chrX:70674030 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_28847 0 0 1 0 2 Cytosol 1 0.500232673441753 0.293596148490906 0.999534653116494 hm5C_site_29150 DeepMRMD:0.293596148490906;iRNA_m5C:0.999534653116494 29151 chr5 32090150 32090150 1 + G C LUSC 32090135 + 32090115 32090155 41 ATCAAGCCTGATGTCAGACTCCCGAGGGGTGCCCAGAAACA ATCAAGCCTGATGTCAGACTCCCGAGGGGTGCCCACAAACA < 41bp 1 0.355587149639685 1 0.596982538700104 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090135 chr5:32090150 nonsynonymous SNV 0.001 1 36 hm5C_associated_SNPs_28851 0 0 1 0 0 chromatin 1 0.500231643921093 0.806034922599792 0.999536712157814 hm5C_site_29151 DeepMRMD:0.806034922599792;iRNA_m5C:0.999536712157814 29152 chr5 32090150 32090150 1 + G C LUSC 32090136 + 32090116 32090156 41 TCAAGCCTGATGTCAGACTCCCGAGGGGTGCCCAGAAACAG TCAAGCCTGATGTCAGACTCCCGAGGGGTGCCCACAAACAG < 41bp 1 0.113061809168235 1 0.565292119979858 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090136 chr5:32090150 nonsynonymous SNV 0.001 1 35 hm5C_associated_SNPs_28852 0 0 1 0 0 chromatin 1 0.500231643921083 0.869415760040284 0.999536712157834 hm5C_site_29152 DeepMRMD:0.869415760040284;iRNA_m5C:0.999536712157834 29153 chr5 32090150 32090150 1 + G C LUSC 32090137 + 32090117 32090157 41 CAAGCCTGATGTCAGACTCCCGAGGGGTGCCCAGAAACAGC CAAGCCTGATGTCAGACTCCCGAGGGGTGCCCACAAACAGC < 41bp 1 0.256369596622665 1 0.781676530838013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090137 chr5:32090150 nonsynonymous SNV 0.001 1 34 hm5C_associated_SNPs_28853 0 0 1 0 0 chromatin 1 0.500231643921096 0.436646938323974 0.999536712157808 hm5C_site_29153 DeepMRMD:0.436646938323974;iRNA_m5C:0.999536712157808 29154 chr5 32090150 32090150 1 + G C LUSC 32090169 + 32090149 32090189 41 AGAAACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCT ACAAACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCT < 41bp 1 0.0303179768179239 1 0.0439543724060059 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090169 chr5:32090150 nonsynonymous SNV 0.001 1 2 hm5C_associated_SNPs_28854 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_29154 DeepMRMD:1;iRNA_m5C:0.999536712157815 29155 chr11 73941323 73941323 1 + G T LUSC 73941327 + 73941307 73941347 41 TTGAAGCCATGTATGGGGACCTTCCTCCTCCAATTATGCTG TTGAAGCCATGTATGGTGACCTTCCTCCTCCAATTATGCTG < 41bp 1 0.0922773158296111 1 0.0301957130432129 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PPME1 ENSG00000214517 CDS Human protein_coding chr11:73941327 chr11:73941323 synonymous SNV . 0 17 hm5C_associated_SNPs_28855 0 0 1 0 1 Ribosome 1 0.500231641111853 1 0.999536717776294 hm5C_site_29155 DeepMRMD:1;iRNA_m5C:0.999536717776294 29156 chr13 111111228 111111228 1 + G A LUSC 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGGCATCAACGGGGAGCCGGGGAGGAAAAGGGACAGAG < 41bp 1 0.696590157044176 1 0.800029039382935 experiment 0.606819685911648 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111228 nonsynonymous SNV 0.314 5 32 hm5C_associated_SNPs_28856 0 0 0 0 1 Cytosol 1 0.500231633436103 0.39994192123413 0.999536733127794 hm5C_site_29156 DeepMRMD:0.39994192123413;iRNA_m5C:0.999536733127794 29157 chr11 33564293 33564293 1 + G T LUSC 33564290 + 33564270 33564310 41 GCAGATCAAAGCTGGGGTGCCTGGAAGAGTGCACAATGGGG GCAGATCAAAGCTGGGGTGCCTGTAAGAGTGCACAATGGGG < 41bp 1 0.310327247983416 1 0.206499606370926 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33564290 chr11:33564293 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_28857 0 0 0 0 0 exosome 1 0.500231621541229 1 0.999536756917542 hm5C_site_29157 DeepMRMD:1;iRNA_m5C:0.999536756917542 29158 chr9 139733466 139733466 1 + C T LUSC 139733467 + 139733447 139733487 41 CGCTGCCTGCAGGCCCCGTCCCCAGTCAAGACATCACTCTT CGCTGCCTGCAGGCCCCGTTCCCAGTCAAGACATCACTCTT < 41bp 1 0.240370180991687 1 0.168876767158508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139733467 chr9:139733466 synonymous SNV . 0 20 hm5C_associated_SNPs_28858 0 0 1 0 0 chromatin 1 0.500232987072687 1 0.999534025854627 hm5C_site_29158 DeepMRMD:1;iRNA_m5C:0.999534025854627 29159 chr15 65157346 65157346 1 + C T LUSC 65157338 + 65157318 65157358 41 CAGCAAGCTCTGAGGTCTCCCCTGAGAGCCAAGAGGACTCA CAGCAAGCTCTGAGGTCTCCCCTGAGAGTCAAGAGGACTCA < 41bp 1 0.438402190737504 1 0.225153803825378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHO2 ENSG00000241839 CDS Human protein_coding chr15:65157338 chr15:65157346 synonymous SNV . 0 29 hm5C_associated_SNPs_28859 0 0 0 0 0 chromatin 1 0.500231643913143 1 0.999536712173714 hm5C_site_29159 DeepMRMD:1;iRNA_m5C:0.999536712173714 29160 chr12 21205109 21205109 1 + G T LUSC 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGTAACCCGTCTGTGGAAACAATGGAAT < 41bp 1 0.395770292688886 1 0.114171326160431 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205109 stopgain 0.961 1 16 hm5C_associated_SNPs_28860 0 0 0 0 2 nucleus 1 0.500231643921055 1 0.99953671215789 hm5C_site_29160 DeepMRMD:1;iRNA_m5C:0.99953671215789 29161 chr19 19638849 19638849 1 + G T LUSC 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCCGCTGGTTGCCCCCCTTGATCGGGGAGCTG < 41bp 1 0.185788000397514 1 0.025438517332077 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638849 nonsynonymous SNV 0.428 2 18 hm5C_associated_SNPs_28861 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164392161 1 0.999536712156779 hm5C_site_29161 DeepMRMD:1;iRNA_m5C:0.999536712156779 29162 chr12 57906114 57906114 1 + G A LUSC 57906095 + 57906075 57906115 41 TCCTTGCTCAGCCCTAGGAGCTGAGGATAACTATACCTTGG TCCTTGCTCAGCCCTAGGAGCTGAGGATAACTATACCTTAG < 41bp 1 0.551353568465031 1 0.366989970207214 experiment 0.897292863069938 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57906095 chr12:57906114 synonymous SNV . 0 40 hm5C_associated_SNPs_28862 0 0 1 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29162 DeepMRMD:1;iRNA_m5C:0.999536712157815 29163 chr15 66777515 66777515 1 + G T LUSC 66777521 + 66777501 66777541 41 GCCAAGGACCCCCGGGAGGCCCCTTAGCTGTGAGTAGCCTG GCCAAGGACCCCCGTGAGGCCCCTTAGCTGTGAGTAGCCTG < 41bp 1 0.159368500529484 1 0.0420305728912354 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66777521 chr15:66777515 nonsynonymous SNV 0.888 2 15 hm5C_associated_SNPs_28863 0 0 1 0 1 Ribosome 1 0.500231643920924 1 0.999536712158153 hm5C_site_29163 DeepMRMD:1;iRNA_m5C:0.999536712158153 29164 chr17 1636833 1636833 1 + G A LUSC 1636828 + 1636808 1636848 41 CACTCCTATCCAGGTGACATCATCCGGAAAATCATCCCCAA CACTCCTATCCAGGTGACATCATCCAGAAAATCATCCCCAA < 41bp 1 0.0920919844166165 1 0.506525814533234 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1636828 chr17:1636833 nonsynonymous SNV 0.999 0 26 hm5C_associated_SNPs_28864 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.986948370933532 0.999536712157817 hm5C_site_29164 DeepMRMD:0.986948370933532;iRNA_m5C:0.999536712157817 29165 chr17 57754397 57754397 1 + A G LUSC 57754417 + 57754397 57754437 41 ATCTACATAGACAGTAATAACAACCCGGAGAGATTTCTTCG GTCTACATAGACAGTAATAACAACCCGGAGAGATTTCTTCG < 41bp 1 0.270781997843635 1 0.141256004571915 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57754417 chr17:57754397 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_28865 0 0 1 0 1 Nucleus 1 0.500231643781142 1 0.999536712437717 hm5C_site_29165 DeepMRMD:1;iRNA_m5C:0.999536712437717 29166 chr5 140741116 140741116 1 + G A LUSC 140741124 + 140741104 140741144 41 GGCGCCTCTATCGCTCAAATCAGTGCCTCTGACCCTGACTT GGCGCCTCTATCACTCAAATCAGTGCCTCTGACCCTGACTT < 41bp 1 0.17335823302868 1 0.404803782701492 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741124 chr5:140741116 nonsynonymous SNV 0.166 0 13 hm5C_associated_SNPs_28866 0 0 0 0 0 exosome 1 0.500231643921054 1 0.999536712157893 hm5C_site_29166 DeepMRMD:1;iRNA_m5C:0.999536712157893 29167 chr3 172052825 172052825 1 + C T LUSC 172052840 + 172052820 172052860 41 CAGACCGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA CAGACTGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA < 41bp 1 0.0645632917076245 1 0.04752317070961 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172052840 chr3:172052825 nonsynonymous SNV 0.801 2 6 hm5C_associated_SNPs_28867 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29167 DeepMRMD:1;iRNA_m5C:0.999536712157815 29168 chr1 248039255 248039255 1 + G T LUSC 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGAGTCTGCTCTTGACCGCCTACCTGCGCAGTGTGCA < 41bp 1 0.505025411352356 1 0.0982820391654968 experiment 0.989949177295287 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039255 nonsynonymous SNV 0.001 4 25 hm5C_associated_SNPs_28869 0 0 0 0 2 Cytosol 1 0.500233114260297 1 0.999533771479405 hm5C_site_29168 DeepMRMD:1;iRNA_m5C:0.999533771479405 29169 chr16 89789782 89789782 1 + A C LUSC 89789767 + 89789747 89789787 41 CCTGCCCCACCTTCAGAGGACACTGTCCTCCGAGTACTGCG CCTGCCCCACCTTCAGAGGACACTGTCCTCCGAGTCCTGCG < 41bp 1 0.345458043116205 1 0.0222293734550476 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF276 ENSG00000158805 CDS Human protein_coding chr16:89789767 chr16:89789782 nonsynonymous SNV 0.719 3 36 hm5C_associated_SNPs_28870 0 0 1 0 0 Nucleus 1 0.500231643923195 1 0.999536712153611 hm5C_site_29169 DeepMRMD:1;iRNA_m5C:0.999536712153611 29170 chr1 76253234 76253234 1 + T C LUSC 76253245 + 76253225 76253265 41 ACACTTTGTTATTGGAGAAACATGCAGATTATATCGCATCC ACACTTTGTCATTGGAGAAACATGCAGATTATATCGCATCC < 41bp 1 0.325650325662561 1 0.342195987701416 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253245 chr1:76253234 nonsynonymous SNV 0.171 1 10 hm5C_associated_SNPs_28871 0 0 1 0 2 Nucleus 1 0.500231643874597 1 0.999536712250807 hm5C_site_29170 DeepMRMD:1;iRNA_m5C:0.999536712250807 29171 chr3 148562331 148562331 1 + C A LUSC 148562312 + 148562292 148562332 41 CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCCT CAAGTGACAGAGCTTCTCGACAAGTTAGACTTTTATGTCAT < 41bp 1 0.475731757738845 1 0.109226435422897 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562312 chr3:148562331 nonsynonymous SNV 0.993 2 40 hm5C_associated_SNPs_28872 0 0 0 0 2 exosome 1 0.500231643755662 1 0.999536712488677 hm5C_site_29171 DeepMRMD:1;iRNA_m5C:0.999536712488677 29172 chr3 148562331 148562331 1 + C A LUSC 148562321 + 148562301 148562341 41 GAGCTTCTCGACAAGTTAGACTTTTATGTCCTGCCTGTGCT GAGCTTCTCGACAAGTTAGACTTTTATGTCATGCCTGTGCT < 41bp 1 0.102253458898451 1 0.0437421202659607 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562321 chr3:148562331 nonsynonymous SNV 0.993 2 31 hm5C_associated_SNPs_28873 0 0 0 0 2 exosome 1 0.500231611500382 1 0.999536776999237 hm5C_site_29172 DeepMRMD:1;iRNA_m5C:0.999536776999237 29173 chr3 148562331 148562331 1 + C A LUSC 148562330 + 148562310 148562350 41 GACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGA GACAAGTTAGACTTTTATGTCATGCCTGTGCTCAATATTGA < 41bp 1 0.217234132863478 1 0.0301330983638763 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562330 chr3:148562331 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_28874 0 0 0 0 2 exosome 1 0.500231644363108 1 0.999536711273783 hm5C_site_29173 DeepMRMD:1;iRNA_m5C:0.999536711273783 29174 chr3 148562331 148562331 1 + C A LUSC 148562334 + 148562314 148562354 41 AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGC AGTTAGACTTTTATGTCATGCCTGTGCTCAATATTGATGGC < 41bp 1 0.16968144653196 1 0.0438001453876495 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562334 chr3:148562331 nonsynonymous SNV 0.993 2 18 hm5C_associated_SNPs_28875 0 0 0 0 2 exosome 1 0.500231641111127 1 0.999536717777746 hm5C_site_29174 DeepMRMD:1;iRNA_m5C:0.999536717777746 29175 chr3 148562331 148562331 1 + C A LUSC 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGACTTTTATGTCATGCCTGTGCTCAATATTGATGGCT < 41bp 1 0.40216679018037 1 0.163502216339111 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562331 nonsynonymous SNV 0.993 2 17 hm5C_associated_SNPs_28876 0 0 0 0 2 exosome 1 0.500233254349032 1 0.999533491301936 hm5C_site_29175 DeepMRMD:1;iRNA_m5C:0.999533491301936 29176 chr3 148562331 148562331 1 + C A LUSC 148562342 + 148562322 148562362 41 TTTTATGTCCTGCCTGTGCTCAATATTGATGGCTACATCTA TTTTATGTCATGCCTGTGCTCAATATTGATGGCTACATCTA < 41bp 1 0.657269326749541 1 0.125762820243835 experiment 0.685461346500918 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562342 chr3:148562331 nonsynonymous SNV 0.993 2 10 hm5C_associated_SNPs_28878 0 0 0 0 2 exosome 1 0.500231619125965 1 0.99953676174807 hm5C_site_29176 DeepMRMD:1;iRNA_m5C:0.99953676174807 29177 chr7 66703398 66703398 1 + A G LUSC 66703395 + 66703375 66703415 41 TGGATCAAAAACGTTCAGCGCAAAGGATTATATGGCCAGAA TGGATCAAAAACGTTCAGCGCAAGGGATTATATGGCCAGAA < 41bp 1 0.589316219766162 1 0.523453116416931 experiment 0.821367560467675 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66703395 chr7:66703398 nonsynonymous SNV 0.963 0 24 hm5C_associated_SNPs_28879 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.953093767166138 0.999536712157815 hm5C_site_29177 DeepMRMD:0.953093767166138;iRNA_m5C:0.999536712157815 29178 chr11 134244114 134244114 1 + C T LUSC 134244119 + 134244099 134244139 41 GGGTAGCTTGTCCATCAGCTCCACCCCTTGTGACACCTTTC GGGTAGCTTGTCCATTAGCTCCACCCCTTGTGACACCTTTC < 41bp 1 0.0467634598487645 1 0.0543158650398254 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134244119 chr11:134244114 synonymous SNV . 0 16 hm5C_associated_SNPs_28880 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_29178 DeepMRMD:1;iRNA_m5C:0.999536712157815 29179 chr1 33745931 33745931 1 + G T LUSC 33745921 + 33745901 33745941 41 ATCAAGACAATCCAGGGCCACGGCCTGCTTGGCCCCCCCAA ATCAAGACAATCCAGGGCCACGGCCTGCTTTGCCCCCCCAA < 41bp 1 0.460574105856115 1 0.624399125576019 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33745921 chr1:33745931 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_28881 0 0 0 0 0 Nucleus 1 0.500231643921092 0.751201748847962 0.999536712157815 hm5C_site_29179 DeepMRMD:0.751201748847962;iRNA_m5C:0.999536712157815 29180 chr6 107824935 107824935 1 + G C LUSC 107824953 + 107824933 107824973 41 GAGGATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAG GACGATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAG < 41bp 1 0.130149477240933 1 0.221783071756363 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOBP ENSG00000112320 CDS Human protein_coding chr6:107824953 chr6:107824935 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_28882 0 0 1 0 2 cytosol 1 0.500231641935147 1 0.999536716129707 hm5C_site_29180 DeepMRMD:1;iRNA_m5C:0.999536716129707 29181 chrX 128722174 128722174 1 + C T LUSC 128722162 + 128722142 128722182 41 GACTTCTTTGGTAGGAGGACCTGTTCCAGACCCCTGGAATG GACTTCTTTGGTAGGAGGACCTGTTCCAGACCTCTGGAATG < 41bp 1 0.107020779727766 1 0.0611771047115326 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128722162 chrX:128722174 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_28883 0 0 1 0 2 Cytosol 1 0.500231643921157 1 0.999536712157687 hm5C_site_29181 DeepMRMD:1;iRNA_m5C:0.999536712157687 29182 chr1 156756576 156756576 1 + T C LUSC 156756587 + 156756567 156756607 41 TCTTGCCCCTGTTGTGGGCACCACAACCACCACTCCGTCGC TCTTGCCCCCGTTGTGGGCACCACAACCACCACTCCGTCGC < 41bp 1 0.482891280351914 1 0.0759349465370178 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756587 chr1:156756576 synonymous SNV . 0 10 hm5C_associated_SNPs_28884 0 0 1 0 0 Ribosome 1 0.500231643103842 1 0.999536713792315 hm5C_site_29182 DeepMRMD:1;iRNA_m5C:0.999536713792315 29183 chr1 156756576 156756576 1 + T C LUSC 156756593 + 156756573 156756613 41 CCCTGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTG CCCCGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTG < 41bp 1 0.180129096000958 1 0.145755171775818 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756593 chr1:156756576 synonymous SNV . 0 4 hm5C_associated_SNPs_28885 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_29183 DeepMRMD:1;iRNA_m5C:0.999536712157815 29184 chr1 156756576 156756576 1 + T C LUSC 156756596 + 156756576 156756616 41 TGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTGCTA CGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTGCTA < 41bp 1 0.221083574843053 1 0.191990375518799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756596 chr1:156756576 synonymous SNV . 0 1 hm5C_associated_SNPs_28886 0 0 1 0 0 Ribosome 1 0.500231643921199 1 0.999536712157602 hm5C_site_29184 DeepMRMD:1;iRNA_m5C:0.999536712157602 29185 chr12 56075807 56075807 1 + C A LUSC 56075823 + 56075803 56075843 41 CCACCGGGCTGCAGGGTCACCTGCCTAGACCCAAATCCCCA CCACAGGGCTGCAGGGTCACCTGCCTAGACCCAAATCCCCA < 41bp 1 0.480564087834779 1 0.0653408765792847 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL7B ENSG00000170439 CDS Human protein_coding chr12:56075823 chr12:56075807 nonsynonymous SNV 0.902 0 5 hm5C_associated_SNPs_28887 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29185 DeepMRMD:1;iRNA_m5C:0.999536712157815 29186 chr19 21300974 21300974 1 + C T LUSC 21300990 + 21300970 21301010 41 AATTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACA AATTTAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACA < 41bp 1 0.352609149925249 1 0.108564257621765 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300990 chr19:21300974 stopgain 0.006 0 5 hm5C_associated_SNPs_28888 0 0 1 1 0 Cytosol 1 0.500231643686804 1 0.999536712626392 hm5C_site_29186 DeepMRMD:1;iRNA_m5C:0.999536712626392 29187 chr19 21300974 21300974 1 + C T LUSC 21300992 + 21300972 21301012 41 TTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT TTTAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT < 41bp 1 0.293607044684408 1 0.116174429655075 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300992 chr19:21300974 stopgain 0.006 0 3 hm5C_associated_SNPs_28889 0 0 1 1 0 Cytosol 1 0.500231627169915 1 0.999536745660171 hm5C_site_29187 DeepMRMD:1;iRNA_m5C:0.999536745660171 29188 chr19 21300975 21300975 1 + A G LUSC 21300990 + 21300970 21301010 41 AATTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACA AATTCGGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACA < 41bp 1 0.382891025208617 1 0.0984289944171906 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300990 chr19:21300975 nonsynonymous SNV 0.007 0 6 hm5C_associated_SNPs_28890 0 0 1 1 0 Cytosol 1 0.500231643919207 1 0.999536712161587 hm5C_site_29188 DeepMRMD:1;iRNA_m5C:0.999536712161587 29189 chr19 21300975 21300975 1 + A G LUSC 21300992 + 21300972 21301012 41 TTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT TTCGGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT < 41bp 1 0.270644431482821 1 0.0822239518165588 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300992 chr19:21300975 nonsynonymous SNV 0.007 0 4 hm5C_associated_SNPs_28891 0 0 1 1 0 Cytosol 1 0.500231769142886 1 0.999536461714227 hm5C_site_29189 DeepMRMD:1;iRNA_m5C:0.999536461714227 29190 chr13 114203835 114203835 1 + G A LUSC 114203826 + 114203806 114203846 41 GCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG GCAATCACGAGGTGTGTGCCCAGACCGGAAAGACGGTCCAG < 41bp 1 0.634392957866862 1 0.256246149539948 experiment 0.731214084266277 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203826 chr13:114203835 synonymous SNV . 0 30 hm5C_associated_SNPs_28893 0 0 0 0 1 Ribosome 1 0.500231467256094 1 0.999537065487812 hm5C_site_29190 DeepMRMD:1;iRNA_m5C:0.999537065487812 29191 chr5 6746348 6746348 1 + C T LUSC 6746347 + 6746327 6746367 41 TTGCATCCAAGAATTGATGCCCGGAGAGCTGATGAAAACCT TTGCATCCAAGAATTGATGCCTGGAGAGCTGATGAAAACCT < 41bp 1 0.672736492502712 1 0.436759859323502 experiment 0.654527014994576 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6746347 chr5:6746348 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_28895 0 0 1 0 1 Nucleus 1 0.500231643987041 1 0.999536712025919 hm5C_site_29191 DeepMRMD:1;iRNA_m5C:0.999536712025919 29192 chr17 65722740 65722740 1 + G T LUSC 65722746 + 65722726 65722766 41 ACGTCGCAGTCCTAGGAAGTCCACTAGCAGCTTCTAAGGGT ACGTCGCAGTCCTATGAAGTCCACTAGCAGCTTCTAAGGGT < 41bp 1 0.422306165745166 1 0.132285118103027 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65722746 chr17:65722740 stopgain 0.328 1 15 hm5C_associated_SNPs_28896 0 0 1 0 0 Nucleus 1 0.500231572450611 1 0.999536855098778 hm5C_site_29192 DeepMRMD:1;iRNA_m5C:0.999536855098778 29193 chr6 139487474 139487474 1 + G C LUSC 139487463 + 139487443 139487483 41 GATCTGCAGCTTCGGTAGGCCGGTGGACCTGGAGAAGGACG GATCTGCAGCTTCGGTAGGCCGGTGGACCTGCAGAAGGACG < 41bp 1 0.539541058431216 1 0.425220668315887 experiment 0.920917883137567 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECA ENSG00000112406 CDS Human protein_coding chr6:139487463 chr6:139487474 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_28897 0 0 1 0 1 Ribosome 1 0.500231600579403 1 0.999536798841194 hm5C_site_29193 DeepMRMD:1;iRNA_m5C:0.999536798841194 29194 chr1 164789349 164789349 1 + G T LUSC 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTTTTCATGAGCGTGCAGTCACTCAA < 41bp 1 0.696878033424916 1 0.351151257753372 experiment 0.606243933150169 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789349 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_28898 0 0 1 0 2 Ribosome 1 0.500231641532465 1 0.99953671693507 hm5C_site_29194 DeepMRMD:1;iRNA_m5C:0.99953671693507 29195 chr11 65267660 65267660 1 + A G LUSC 65267647 + 65267627 65267667 41 TCAAAAAGCTACTAAAAGGACTGGTGTAATTTAAAAAAAAC TCAAAAAGCTACTAAAAGGACTGGTGTAATTTAGAAAAAAC < 41bp 1 0.502765088538228 1 0.128970414400101 experiment 0.994469822923544 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267647 chr11:65267660 . . 0 34 hm5C_associated_SNPs_28899 0 0 1 0 0 unknown 1 0.500231924051239 1 0.999536151897522 hm5C_site_29195 DeepMRMD:1;iRNA_m5C:0.999536151897522 29196 chr2 71577120 71577120 1 + A T LUSC 71577126 + 71577106 71577146 41 TAATTTCATCTGTAAGCCAGCAAGAGCGGATCCCACATGAA TAATTTCATCTGTATGCCAGCAAGAGCGGATCCCACATGAA < 41bp 1 0.511658745044561 1 0.680720388889313 experiment 0.976682509910878 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71577126 chr2:71577120 nonsynonymous SNV 0.846 2 15 hm5C_associated_SNPs_28900 0 0 1 0 0 Nucleus 1 0.50023164385366 0.638559222221374 0.99953671229268 hm5C_site_29196 DeepMRMD:0.638559222221374;iRNA_m5C:0.99953671229268 29197 chr13 27847425 27847425 1 + G C LUSC 27847416 + 27847396 27847436 41 TAGCCAATGAGCTGGGCAGCCTGTTCCTTGAAATTTCCACT TAGCCAATGAGCTGGGCAGCCTGTTCCTTCAAATTTCCACT < 41bp 1 0.210012306873253 1 0.050396591424942 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RASL11A ENSG00000122035 CDS Human protein_coding chr13:27847416 chr13:27847425 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_28901 0 0 1 0 0 Ribosome 1 0.500231656171647 1 0.999536687656706 hm5C_site_29197 DeepMRMD:1;iRNA_m5C:0.999536687656706 29198 chr1 28861645 28861645 1 + A G LUSC 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATGTGCCTGTGGTGAAGGTGGCCTCA < 41bp 1 0.291721331519084 1 0.131896913051605 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861645 synonymous SNV . 0 29 hm5C_associated_SNPs_28902 0 0 1 0 2 Ribosome 1 0.500231643587166 1 0.999536712825668 hm5C_site_29198 DeepMRMD:1;iRNA_m5C:0.999536712825668 29199 chr12 101674928 101674928 1 + A T LUSC 101674915 + 101674895 101674935 41 TTCTTACATTTGCTGAACGACTGGGGAATGTTAATATTGAT TTCTTACATTTGCTGAACGACTGGGGAATGTTATTATTGAT < 41bp 1 0.385056135464882 1 0.23149362206459 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101674915 chr12:101674928 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_28903 0 0 1 0 2 Cytosol 1 0.5002316440129 1 0.999536711974201 hm5C_site_29199 DeepMRMD:1;iRNA_m5C:0.999536711974201 29200 chr14 104642774 104642774 1 + G A LUSC 104642772 + 104642752 104642792 41 CCTCCCCCGGAAACCGAGGACTGCCTCTGCCACCACCCGTG CCTCCCCCGGAAACCGAGGACTACCTCTGCCACCACCCGTG < 41bp 1 0.12666823652851 1 0.0696835219860077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642772 chr14:104642774 nonsynonymous SNV 0.014 0 23 hm5C_associated_SNPs_28905 0 0 1 0 0 Ribosome 1 0.500231643943403 1 0.999536712113195 hm5C_site_29200 DeepMRMD:1;iRNA_m5C:0.999536712113195 29201 chr5 1034405 1034405 1 + C T LUSC 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCATGCT < 41bp 1 0.348519981719394 1 0.4992735683918 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034405 nonsynonymous SNV 0.250 4 38 hm5C_associated_SNPs_28907 0 0 0 0 2 exosome 1 0.500231643913867 1 0.999536712172265 hm5C_site_29201 DeepMRMD:1;iRNA_m5C:0.999536712172265 29202 chr17 17698002 17698002 1 + G T LUSC 17698000 + 17697980 17698020 41 AGAGCCTACACGGCAGTCTGCCGCTCGACAGCTTCTCCAAG AGAGCCTACACGGCAGTCTGCCTCTCGACAGCTTCTCCAAG < 41bp 1 0.0151472961566289 1 0.00691184401512146 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17698000 chr17:17698002 synonymous SNV . 0 23 hm5C_associated_SNPs_28908 1 0 1 0 0 chromatin 1 0.500231643858103 1 0.999536712283794 hm5C_site_29202 DeepMRMD:1;iRNA_m5C:0.999536712283794 not specified not specified 29203 chr11 63719960 63719960 1 + G T LUSC 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCATCGCTTGGGAAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.575934282694542 1 0.571203827857971 experiment 0.848131434610916 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719960 synonymous SNV . 0 12 hm5C_associated_SNPs_28909 0 0 1 0 2 Ribosome 1 0.500231643921092 0.857592344284058 0.999536712157815 hm5C_site_29203 DeepMRMD:0.857592344284058;iRNA_m5C:0.999536712157815 29204 chr19 44341220 44341220 1 + A T LUSC 44341234 + 44341214 44341254 41 ACATTCAGGGATGTGGCCATCGACTTCTCTCAGGAGGAGTG ACATTCTGGGATGTGGCCATCGACTTCTCTCAGGAGGAGTG < 41bp 1 0.448859878452998 1 0.126212120056152 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44341234 chr19:44341220 nonsynonymous SNV 0.999 3 7 hm5C_associated_SNPs_28910 0 0 1 0 1 Nucleus 1 0.500232470699647 1 0.999535058600707 hm5C_site_29204 DeepMRMD:1;iRNA_m5C:0.999535058600707 29205 chr3 142408614 142408614 1 + A G LUSC 142408604 + 142408584 142408624 41 CTAATTTGTTTAACACATACCCGTGCCTGCACAAGCCGAAT CTAATTTGTTTAACACATACCCGTGCCTGCGCAAGCCGAAT < 41bp 1 0.112690360227446 1 0.131211519241333 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142408604 chr3:142408614 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_28911 0 0 0 0 1 Nucleus 1 0.500231643895192 1 0.999536712209616 hm5C_site_29205 DeepMRMD:1;iRNA_m5C:0.999536712209616 29206 chr17 72239531 72239531 1 + G T LUSC 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTTCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC < 41bp 1 0.13602454827227 1 0.0723492205142975 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239531 synonymous SNV . 0 6 hm5C_associated_SNPs_28912 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_29206 DeepMRMD:1;iRNA_m5C:0.999536712157815 29207 chr3 47374703 47374703 1 + C T LUSC 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ACGACCGGGAGCAGAGGGGTCCCTATCTGCCTGAGCTGCTG < 41bp 1 0.397797878317732 1 0.123991638422012 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374703 synonymous SNV . 0 26 hm5C_associated_SNPs_28913 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29207 DeepMRMD:1;iRNA_m5C:0.999536712157815 29208 chr12 69119569 69119569 1 + C T LUSC 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTCTTATCCTGGGAGATATTGATGGTAA < 41bp 1 0.32672629320843 1 0.476724594831467 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119569 synonymous SNV . 0 30 hm5C_associated_SNPs_28914 0 0 1 0 2 chromatin 1 0.500231643917176 1 0.999536712165649 hm5C_site_29208 DeepMRMD:1;iRNA_m5C:0.999536712165649 29209 chr10 70506929 70506929 1 + G T LUSC 70506935 + 70506915 70506955 41 CAGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAG CAGTGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAG < 41bp 1 0.138417109890292 1 0.210924953222275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506935 chr10:70506929 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_28915 0 0 1 2 1 Nucleus 1 0.500231644712957 1 0.999536710574087 hm5C_site_29209 DeepMRMD:1;iRNA_m5C:0.999536710574087 29210 chr10 70506929 70506929 1 + G T LUSC 70506936 + 70506916 70506956 41 AGTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGT AGTGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAGT < 41bp 1 0.142864042600363 1 0.208108872175217 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506936 chr10:70506929 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_28916 0 0 1 2 1 Nucleus 1 0.500232665553926 1 0.999534668892147 hm5C_site_29210 DeepMRMD:1;iRNA_m5C:0.999534668892147 29211 chr10 70506929 70506929 1 + G T LUSC 70506937 + 70506917 70506957 41 GTGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTA GTGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAGTA < 41bp 1 0.493439383748196 1 0.338229566812515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506937 chr10:70506929 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_28917 0 0 1 2 1 Nucleus 1 0.500231643828073 1 0.999536712343855 hm5C_site_29211 DeepMRMD:1;iRNA_m5C:0.999536712343855 29212 chr10 70506929 70506929 1 + G T LUSC 70506938 + 70506918 70506958 41 TGCTGTCAAAGGGAAAACCCCCCAAGTAGGTGACAGAGTAT TGCTGTCAAAGTGAAAACCCCCCAAGTAGGTGACAGAGTAT < 41bp 1 0.308670706701291 1 0.231115907430649 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70506938 chr10:70506929 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_28918 0 0 1 2 1 Nucleus 1 0.500232072734473 1 0.999535854531055 hm5C_site_29212 DeepMRMD:1;iRNA_m5C:0.999535854531055 29213 chr5 61778973 61778973 1 + A G LUSC 61778983 + 61778963 61779003 41 TACTCCTCTAATTCAGAGATCACTGGAATTTTCTGTAAGCT TACTCCTCTAGTTCAGAGATCACTGGAATTTTCTGTAAGCT < 41bp 1 0.141757912971107 1 0.13109016418457 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IPO11 ENSG00000086200 CDS Human protein_coding chr5:61778983 chr5:61778973 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_28919 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_29213 DeepMRMD:1;iRNA_m5C:0.999536712157817 29214 chr10 45486409 45486409 1 + A G LUSC 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGCGGACAAAATTGAAAGACTGC < 41bp 1 0.0707743945620296 1 0.274621546268463 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486409 synonymous SNV . 0 32 hm5C_associated_SNPs_28920 0 0 1 0 1 Cytosol 1 0.500231643920878 1 0.999536712158244 hm5C_site_29214 DeepMRMD:1;iRNA_m5C:0.999536712158244 29215 chr20 2843947 2843947 1 + G C LUSC 2843957 + 2843937 2843977 41 CTCGTGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG CTCGTGTTGCCGAGACTTTACCCCCTGGCCATCCAGATATG < 41bp 1 0.250862554575731 1 0.0417172014713287 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843957 chr20:2843947 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_28921 0 0 0 1 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_29215 DeepMRMD:1;iRNA_m5C:0.999536712157815 29216 chr1 183495745 183495745 1 + G A LUSC 183495750 + 183495730 183495770 41 GTTATTACAAGAACTGTGTACAGTATTTAATGTAGATTTAC GTTATTACAAGAACTATGTACAGTATTTAATGTAGATTTAC < 41bp 1 0.237994767328959 1 0.0442043542861938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183495750 chr1:183495745 synonymous SNV . 0 16 hm5C_associated_SNPs_28922 0 0 1 0 1 Cytosol 1 0.500231762582031 1 0.999536474835939 hm5C_site_29216 DeepMRMD:1;iRNA_m5C:0.999536474835939 29217 chr20 13765839 13765839 1 + G A LUSC 13765830 + 13765810 13765850 41 TGTCTCTCCCCGCGGTAGCACCTCGCCCAGAACCCTGAATA TGTCTCTCCCCGCGGTAGCACCTCGCCCAAAACCCTGAATA < 41bp 1 0.176688150519688 1 0.419313848018646 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13765830 chr20:13765839 nonsynonymous SNV 0.917 0 30 hm5C_associated_SNPs_28923 0 0 1 0 1 Ribosome 1 0.500231643921076 1 0.999536712157848 hm5C_site_29217 DeepMRMD:1;iRNA_m5C:0.999536712157848 29218 chr6 158900915 158900915 1 + A T LUSC 158900920 + 158900900 158900940 41 CAGCAGGCCATCGCCAGCACCTTGCGTGAGGACAAGGACGT CAGCAGGCCATCGCCTGCACCTTGCGTGAGGACAAGGACGT < 41bp 1 0.194965633727598 1 0.160855889320374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158900920 chr6:158900915 nonsynonymous SNV 0.990 3 16 hm5C_associated_SNPs_28926 0 0 1 0 1 Ribosome 1 0.500232654015542 1 0.999534691968917 hm5C_site_29218 DeepMRMD:1;iRNA_m5C:0.999534691968917 29219 chrX 107834432 107834432 1 + C T LUSC 107834422 + 107834402 107834442 41 AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCTTGGCCCTGCT < 41bp 1 0.57106165187454 1 0.940315723419189 experiment 0.85787669625092 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107834422 chrX:107834432 nonsynonymous SNV 0.993 4 31 hm5C_associated_SNPs_28927 0 0 1 0 1 Ribosome 1 0.500231643921092 0.119368553161622 0.999536712157815 hm5C_site_29219 DeepMRMD:0.119368553161622;iRNA_m5C:0.999536712157815 29220 chrX 153695768 153695768 1 + C T LUSC 153695748 + 153695728 153695768 41 TTTACCTACTACCCTGATCCCAGCTTTGAGCCGCTGGGGCC TTTACCTACTACCCTGATCCCAGCTTTGAGCCGCTGGGGCT < 41bp 1 0.339652498561465 1 0.528595685958862 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695748 chrX:153695768 nonsynonymous SNV 0.943 3 41 hm5C_associated_SNPs_28928 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.942808628082276 0.999536712157815 hm5C_site_29220 DeepMRMD:0.942808628082276;iRNA_m5C:0.999536712157815 29221 chr4 126372108 126372108 1 + A G LUSC 126372100 + 126372080 126372120 41 CTATTTTGAAATCTCAGAAGCAGCTCCTAAAGGTACTATTG CTATTTTGAAATCTCAGAAGCAGCTCCTGAAGGTACTATTG < 41bp 1 0.0657990622131613 1 0.218521416187286 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126372100 chr4:126372108 nonsynonymous SNV 0.036 0 29 hm5C_associated_SNPs_28929 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_29221 DeepMRMD:1;iRNA_m5C:0.999536712157815 29222 chr8 95835787 95835787 1 + C G LUSC 95835768 + 95835748 95835788 41 AGGAGTCACTGTTGGAGAAACATCTGCGCAAGCCCTGCCCG AGGAGTCACTGTTGGAGAAACATCTGCGCAAGCCCTGCCGG < 41bp 1 0.514875316969019 1 0.268403679132462 experiment 0.970249366061962 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95835768 chr8:95835787 nonsynonymous SNV 0.866 3 40 hm5C_associated_SNPs_28930 0 0 1 0 1 Nucleus 1 0.500231643927955 1 0.999536712144089 hm5C_site_29222 DeepMRMD:1;iRNA_m5C:0.999536712144089 29223 chr15 36989572 36989572 1 + G T LUSC 36989552 + 36989532 36989572 41 GTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTAGAG GTCATGAGCATGAGGTCCTGCTGAGAGACTTGCTTCTAGAT < 41bp 1 0.542854910516985 1 0.241732448339462 experiment 0.914290178966031 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989552 chr15:36989572 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_28931 0 0 1 0 2 Cytosol 1 0.500239670729015 1 0.999520658541969 hm5C_site_29223 DeepMRMD:1;iRNA_m5C:0.999520658541969 29224 chr15 36989572 36989572 1 + G T LUSC 36989560 + 36989540 36989580 41 CATGAGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCT CATGAGGTCCTGCTGAGAGACTTGCTTCTAGATAAAAACCT < 41bp 1 0.255462002220069 1 0.164388358592987 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989560 chr15:36989572 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_28932 0 0 1 0 2 Cytosol 1 0.500231720700859 1 0.999536558598282 hm5C_site_29224 DeepMRMD:1;iRNA_m5C:0.999536558598282 29225 chr15 36989572 36989572 1 + G T LUSC 36989564 + 36989544 36989584 41 AGGTCCTGCTGAGAGACTTGCTTCTAGAGAAAAACCTGTCC AGGTCCTGCTGAGAGACTTGCTTCTAGATAAAAACCTGTCC < 41bp 1 0.163233835577817 1 0.0589678883552551 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989564 chr15:36989572 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_28933 0 0 1 0 2 Cytosol 1 0.500231643874051 1 0.999536712251899 hm5C_site_29225 DeepMRMD:1;iRNA_m5C:0.999536712251899 29226 chr15 36989572 36989572 1 + G T LUSC 36989578 + 36989558 36989598 41 GACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA GACTTGCTTCTAGATAAAAACCTGTCCTTCCTAGGTAAGTA < 41bp 1 0.109345230365198 1 0.0820868909358978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989578 chr15:36989572 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_28934 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_29226 DeepMRMD:1;iRNA_m5C:0.999536712157815 29227 chr15 36989572 36989572 1 + G T LUSC 36989579 + 36989559 36989599 41 ACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT ACTTGCTTCTAGATAAAAACCTGTCCTTCCTAGGTAAGTAT < 41bp 1 0.203907259143719 1 0.0444067716598511 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989579 chr15:36989572 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_28935 0 0 1 0 2 Cytosol 1 0.500211737233612 1 0.999576525532776 hm5C_site_29227 DeepMRMD:1;iRNA_m5C:0.999576525532776 29228 chr15 36989572 36989572 1 + G T LUSC 36989584 + 36989564 36989604 41 CTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC CTTCTAGATAAAAACCTGTCCTTCCTAGGTAAGTATTATTC < 41bp 1 0.0947436666531818 1 0.0542307198047638 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989584 chr15:36989572 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_28936 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29228 DeepMRMD:1;iRNA_m5C:0.999536712157815 29229 chr15 36989572 36989572 1 + G T LUSC 36989587 + 36989567 36989607 41 CTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACA CTAGATAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACA < 41bp 1 0.0880892560089287 1 0.148515611886978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989587 chr15:36989572 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_28937 0 0 1 0 2 Cytosol 1 0.500231659827317 1 0.999536680345367 hm5C_site_29229 DeepMRMD:1;iRNA_m5C:0.999536680345367 29230 chr7 150773221 150773221 1 + C T LUSC 150773215 + 150773195 150773235 41 CCCCTTCATCCTCATCCTCACAGTGCCGCTCCGCATGGTGG CCCCTTCATCCTCATCCTCACAGTGCTGCTCCGCATGGTGG < 41bp 1 0.251940837594305 1 0.0670624375343323 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773215 chr7:150773221 nonsynonymous SNV 0.955 4 27 hm5C_associated_SNPs_28940 0 0 1 0 1 Ribosome 1 0.500231644709936 1 0.999536710580129 hm5C_site_29230 DeepMRMD:1;iRNA_m5C:0.999536710580129 29231 chr7 150773221 150773221 1 + C T LUSC 150773220 + 150773200 150773240 41 TCATCCTCATCCTCACAGTGCCGCTCCGCATGGTGGTGCTC TCATCCTCATCCTCACAGTGCTGCTCCGCATGGTGGTGCTC < 41bp 1 0.135970254255406 1 0.0262405276298523 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773220 chr7:150773221 nonsynonymous SNV 0.955 4 22 hm5C_associated_SNPs_28941 0 0 1 0 1 Ribosome 1 0.500231645805513 1 0.999536708388974 hm5C_site_29231 DeepMRMD:1;iRNA_m5C:0.999536708388974 29232 chr8 145139181 145139181 1 + T G LUSC 145139185 + 145139165 145139205 41 CTTGACCTGCTCAATCTCTTCCAGACCTTCTGCCAGAAAGG CTTGACCTGCTCAATCGCTTCCAGACCTTCTGCCAGAAAGG < 41bp 1 0.442642272321736 1 0.351506531238556 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139185 chr8:145139181 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_28942 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643966292 1 0.999536712067415 hm5C_site_29232 DeepMRMD:1;iRNA_m5C:0.999536712067415 29233 chr3 127323819 127323819 1 + G A LUSC 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGGGCCACGGAGGACGGCGAGGAGGACAAGGAGATGAT < 41bp 1 0.694696951687572 1 0.528165340423584 experiment 0.610606096624855 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323819 nonsynonymous SNV 0.991 1 31 hm5C_associated_SNPs_28943 0 0 1 0 2 Cytosol 1 0.50023163771544 0.943669319152832 0.99953672456912 hm5C_site_29233 DeepMRMD:0.943669319152832;iRNA_m5C:0.99953672456912 29234 chr2 97875427 97875427 1 + G A LUSC 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGTCTTCTCAGAAAAAACCAGCCTTGAAGGTAATGAAAC < 41bp 1 0.242344545052973 1 0.396384835243225 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875427 nonsynonymous SNV 0.004 0 12 hm5C_associated_SNPs_28944 0 0 0 0 1 Cytosol 1 0.500231643908859 1 0.999536712182281 hm5C_site_29234 DeepMRMD:1;iRNA_m5C:0.999536712182281 29235 chr1 29651779 29651779 1 + G T LUSC 29651781 + 29651761 29651801 41 CGCTGCCACAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC CGCTGCCACAACTTGGTGTACGTTTTCTTTGCTGCCAAAAC < 41bp 1 0.0499051570730959 1 0.0387937426567078 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPRU ENSG00000060656 CDS Human protein_coding chr1:29651781 chr1:29651779 nonsynonymous SNV 0.994 3 19 hm5C_associated_SNPs_28945 0 0 1 0 2 Endoplasmic reticulum 1 0.500231668850255 1 0.99953666229949 hm5C_site_29235 DeepMRMD:1;iRNA_m5C:0.99953666229949 29236 chr5 912047 912047 1 + T A LUSC 912029 + 912009 912049 41 CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACATTG CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACAATG < 41bp 1 0.344616911799751 1 0.0236456096172333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:912029 chr5:912047 nonsynonymous SNV 0.705 5 39 hm5C_associated_SNPs_28946 0 0 1 0 2 Ribosome 1 0.50023170305865 1 0.999536593882701 hm5C_site_29236 DeepMRMD:1;iRNA_m5C:0.999536593882701 29237 chr6 43171608 43171608 1 + C T LUSC 43171598 + 43171578 43171618 41 CTGTTTGTTCCCAGACTGAACAGGGTTTTGCGCCACGAGCA CTGTTTGTTCCCAGACTGAACAGGGTTTTGTGCCACGAGCA < 41bp 1 0.622437674794827 1 0.843187689781189 experiment 0.755124650410347 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43171598 chr6:43171608 nonsynonymous SNV 0.984 3 31 hm5C_associated_SNPs_28948 0 0 0 0 1 chromatin 1 0.500231643921092 0.313624620437622 0.999536712157815 hm5C_site_29237 DeepMRMD:0.313624620437622;iRNA_m5C:0.999536712157815 29238 chr14 73550247 73550247 1 + G T LUSC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCTGAAAGCTT < 41bp 1 0.569866087858464 1 0.486958265304565 experiment 0.860267824283073 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550247 stopgain 0.998 1 33 hm5C_associated_SNPs_28949 0 0 1 0 2 Nucleus 1 0.50023164414513 1 0.999536711709741 hm5C_site_29238 DeepMRMD:1;iRNA_m5C:0.999536711709741 29239 chr16 72142741 72142741 1 + C T LUSC 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCGCACAGGGATGCCCTGCTACTTGCACCCCACCA < 41bp 1 0.135077105328714 1 0.0543544590473175 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142741 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_28950 0 0 1 0 2 Cytosol 1 0.500231643936835 1 0.999536712126331 hm5C_site_29239 DeepMRMD:1;iRNA_m5C:0.999536712126331 29240 chr14 73550249 73550249 1 + A T LUSC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGTAAGCTT < 41bp 1 0.606212164600775 1 0.43021622300148 experiment 0.78757567079845 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550249 synonymous SNV . 0 35 hm5C_associated_SNPs_28951 0 0 1 0 2 Nucleus 1 0.500231644034674 1 0.999536711930651 hm5C_site_29240 DeepMRMD:1;iRNA_m5C:0.999536711930651 29241 chr16 57171169 57171169 1 + A T LUSC 57171175 + 57171155 57171195 41 CCGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGG CCGGTTTGCGGCCCTGGCCACACAACAGCGGACGGCCACGG < 41bp 1 0.64210027452026 1 0.472647696733475 experiment 0.71579945095948 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57171175 chr16:57171169 nonsynonymous SNV 0.992 1 15 hm5C_associated_SNPs_28952 0 0 1 0 1 chromatin 1 0.500231754469868 1 0.999536491060264 hm5C_site_29241 DeepMRMD:1;iRNA_m5C:0.999536491060264 29242 chr20 31374381 31374381 1 + G A LUSC 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCA < 41bp 1 0.339689944148443 1 0.424803286790848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374381 nonsynonymous SNV 0.997 3 41 hm5C_associated_SNPs_28953 0 0 0 0 1 chromatin 1 0.500231643981951 1 0.999536712036098 hm5C_site_29242 DeepMRMD:1;iRNA_m5C:0.999536712036098 29243 chr20 31374381 31374381 1 + G A LUSC 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCAG < 41bp 1 0.647122823690188 1 0.604022622108459 experiment 0.705754352619625 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374381 nonsynonymous SNV 0.997 3 40 hm5C_associated_SNPs_28954 0 0 0 0 1 chromatin 1 0.500231643921091 0.791954755783082 0.999536712157817 hm5C_site_29243 DeepMRMD:0.791954755783082;iRNA_m5C:0.999536712157817 29244 chr5 179151695 179151695 1 + C A LUSC 179151689 + 179151669 179151709 41 TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATG TGGTATGGAGTATAAGAAAACTGATGAACCTCAACCGGATG < 41bp 1 0.51324699433837 1 0.177122175693512 experiment 0.973506011323261 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151689 chr5:179151695 nonsynonymous SNV 0.943 1 27 hm5C_associated_SNPs_28955 0 0 1 0 2 Nucleus 1 0.50023163894032 1 0.999536722119361 hm5C_site_29244 DeepMRMD:1;iRNA_m5C:0.999536722119361 29245 chr5 179151695 179151695 1 + C A LUSC 179151698 + 179151678 179151718 41 GTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAG GTATAAGAAAACTGATGAACCTCAACCGGATGTGAAGGAAG < 41bp 1 0.638498940838659 1 0.742653846740723 experiment 0.723002118322682 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151698 chr5:179151695 nonsynonymous SNV 0.943 1 18 hm5C_associated_SNPs_28956 0 0 1 0 2 Nucleus 1 0.500233973080444 0.514692306518554 0.999532053839111 hm5C_site_29245 DeepMRMD:0.514692306518554;iRNA_m5C:0.999532053839111 29246 chr5 179151695 179151695 1 + C A LUSC 179151700 + 179151680 179151720 41 ATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAG ATAAGAAAACTGATGAACCTCAACCGGATGTGAAGGAAGAG < 41bp 1 0.269165911240542 1 0.184454143047333 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151700 chr5:179151695 nonsynonymous SNV 0.943 1 16 hm5C_associated_SNPs_28957 0 0 1 0 2 Nucleus 1 0.500231165156422 1 0.999537669687157 hm5C_site_29246 DeepMRMD:1;iRNA_m5C:0.999537669687157 29247 chr5 179151695 179151695 1 + C A LUSC 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGAACCTCAACCGGATGTGAAGGAAGAGGAAG < 41bp 1 0.498521378686011 1 0.754861235618591 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151695 nonsynonymous SNV 0.943 1 12 hm5C_associated_SNPs_28958 0 0 1 0 2 Nucleus 1 0.500232139000289 0.490277528762818 0.999535721999422 hm5C_site_29247 DeepMRMD:0.490277528762818;iRNA_m5C:0.999535721999422 29248 chr20 34204067 34204067 1 + G T LUSC 34204049 + 34204029 34204069 41 AAGGGCTCCGGTCAGCGGAGCCCGGGCCTGGGGAGCCCGAG AAGGGCTCCGGTCAGCGGAGCCCGGGCCTGGGGAGCCCTAG < 41bp 1 0.423653353589912 1 0.379497587680817 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34204049 chr20:34204067 stopgain 0.996 0 39 hm5C_associated_SNPs_28959 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_29248 DeepMRMD:1;iRNA_m5C:0.999536712157815 29249 chr20 34204067 34204067 1 + G T LUSC 34204050 + 34204030 34204070 41 AGGGCTCCGGTCAGCGGAGCCCGGGCCTGGGGAGCCCGAGG AGGGCTCCGGTCAGCGGAGCCCGGGCCTGGGGAGCCCTAGG < 41bp 1 0.645520842354581 1 0.926349282264709 experiment 0.708958315290837 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34204050 chr20:34204067 stopgain 0.996 0 38 hm5C_associated_SNPs_28960 0 0 0 0 0 chromatin 1 0.500231643802012 0.147301435470582 0.999536712395975 hm5C_site_29249 DeepMRMD:0.147301435470582;iRNA_m5C:0.999536712395975 29250 chr8 48877253 48877253 1 + G A LUSC 48877243 + 48877223 48877263 41 ACCATTCAACGCATTGAAGACTAAGAATATGAGAAACCTGA ACCATTCAACGCATTGAAGACTAAGAATATAAGAAACCTGA < 41bp 1 0.20566680439798 1 0.385665625333786 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48877243 chr8:48877253 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_28962 0 0 1 0 0 Cytosol 1 0.500231639682731 1 0.999536720634538 hm5C_site_29250 DeepMRMD:1;iRNA_m5C:0.999536720634538 29251 chr12 110770413 110770413 1 + G A LUSC 110770433 + 110770413 110770453 41 GGACAGAGTGGAAGGTGATACTTGTTCCCTTAATGAGTTTA AGACAGAGTGGAAGGTGATACTTGTTCCCTTAATGAGTTTA < 41bp 1 0.170951172386682 1 0.0864560008049011 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110770433 chr12:110770413 synonymous SNV . 0 1 hm5C_associated_SNPs_28963 0 0 1 0 1 Nucleus 1 0.500231633575565 1 0.999536732848869 hm5C_site_29251 DeepMRMD:1;iRNA_m5C:0.999536732848869 29252 chr1 154304496 154304496 1 + G A LUSC 154304485 + 154304465 154304505 41 TGGGCTGTGTTACATAGAGACAGCAGAACTTGATGGGTAAG TGGGCTGTGTTACATAGAGACAGCAGAACTTAATGGGTAAG < 41bp 1 0.634125904916723 1 0.478939235210419 experiment 0.731748190166553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154304485 chr1:154304496 nonsynonymous SNV 0.886 5 32 hm5C_associated_SNPs_28964 0 0 1 0 2 chromatin 1 0.500231643921134 1 0.999536712157731 hm5C_site_29252 DeepMRMD:1;iRNA_m5C:0.999536712157731 29253 chr17 49239125 49239125 1 + A G LUSC 49239112 + 49239092 49239132 41 CATTATACATGGCAGTGATTCTGTGGAGAGTGCAGAGAAGG CATTATACATGGCAGTGATTCTGTGGAGAGTGCGGAGAAGG < 41bp 1 0.468906175979765 1 0.482679069042206 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239112 chr17:49239125 synonymous SNV . 0 34 hm5C_associated_SNPs_28965 0 0 1 0 1 Ribosome 1 0.500231643920971 1 0.999536712158058 hm5C_site_29253 DeepMRMD:1;iRNA_m5C:0.999536712158058 29254 chr17 49239125 49239125 1 + A G LUSC 49239124 + 49239104 49239144 41 CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGCTTGT CAGTGATTCTGTGGAGAGTGCGGAGAAGGAGATCGGCTTGT < 41bp 1 0.510931557204393 1 0.698559880256653 experiment 0.978136885591215 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239124 chr17:49239125 synonymous SNV . 0 22 hm5C_associated_SNPs_28966 0 0 1 0 1 Ribosome 1 0.500231643921094 0.602880239486694 0.999536712157813 hm5C_site_29254 DeepMRMD:0.602880239486694;iRNA_m5C:0.999536712157813 29255 chr20 58519945 58519945 1 + A T LUSC 58519940 + 58519920 58519960 41 CTGTCCGGCAGTGGAAGCAGCTCTAAGGTGGAAACCAGCGG CTGTCCGGCAGTGGAAGCAGCTCTATGGTGGAAACCAGCGG < 41bp 1 0.695687502168917 1 0.765943288803101 experiment 0.608624995662167 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519940 chr20:58519945 nonsynonymous SNV 0.005 1 26 hm5C_associated_SNPs_28967 0 0 1 0 0 Cytosol 1 0.500231648875543 0.468113422393798 0.999536702248914 hm5C_site_29255 DeepMRMD:0.468113422393798;iRNA_m5C:0.999536702248914 29256 chr11 74329607 74329607 1 + G T LUSC 74329602 + 74329582 74329622 41 ATTTAGTGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTC ATTTAGTGCTATACAATGTGCAGCTTCCGTCCCTAGAGCTC < 41bp 1 0.35209869634053 1 0.25530081987381 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329602 chr11:74329607 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_28968 0 0 1 0 1 Nucleus 1 0.500231644825127 1 0.999536710349746 hm5C_site_29256 DeepMRMD:1;iRNA_m5C:0.999536710349746 29257 chr11 74329607 74329607 1 + G T LUSC 74329605 + 74329585 74329625 41 TAGTGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTG TAGTGCTATACAATGTGCAGCTTCCGTCCCTAGAGCTCCTG < 41bp 1 0.0567239558009373 1 0.0531302094459534 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329605 chr11:74329607 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_28969 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29257 DeepMRMD:1;iRNA_m5C:0.999536712157815 29258 chr11 74329607 74329607 1 + G T LUSC 74329608 + 74329588 74329628 41 TGCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTG TGCTATACAATGTGCAGCTTCCGTCCCTAGAGCTCCTGCTG < 41bp 1 0.0768296773729985 1 0.053628146648407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329608 chr11:74329607 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_28970 0 0 1 0 1 Nucleus 1 0.500231636524144 1 0.999536726951711 hm5C_site_29258 DeepMRMD:1;iRNA_m5C:0.999536726951711 29259 chr11 74329607 74329607 1 + G T LUSC 74329609 + 74329589 74329629 41 GCTATACAATGTGCAGCTGCCGTCCCTAGAGCTCCTGCTGA GCTATACAATGTGCAGCTTCCGTCCCTAGAGCTCCTGCTGA < 41bp 1 0.205277332762934 1 0.180572301149368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329609 chr11:74329607 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_28971 0 0 1 0 1 Nucleus 1 0.500231643921127 1 0.999536712157745 hm5C_site_29259 DeepMRMD:1;iRNA_m5C:0.999536712157745 29260 chr11 74329607 74329607 1 + G T LUSC 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTTCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT < 41bp 1 0.539942557015967 1 0.0966184437274933 experiment 0.920114885968065 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329607 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_28973 0 0 1 0 1 Nucleus 1 0.500231643921908 1 0.999536712156185 hm5C_site_29260 DeepMRMD:1;iRNA_m5C:0.999536712156185 29261 chr11 74329607 74329607 1 + G T LUSC 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TTCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA < 41bp 1 0.693501321978932 1 0.14814418554306 experiment 0.612997356042135 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329607 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_28974 0 0 1 0 1 Nucleus 1 0.500231643918844 1 0.999536712162312 hm5C_site_29261 DeepMRMD:1;iRNA_m5C:0.999536712162312 29262 chr1 45479691 45479691 1 + C T LUSC 45479707 + 45479687 45479727 41 TCCTCACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTG TCCTTACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTG < 41bp 1 0.254912095232814 1 0.0780476033687592 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UROD ENSG00000126088 CDS Human protein_coding chr1:45479707 chr1:45479691 synonymous SNV . 0 5 hm5C_associated_SNPs_28975 0 0 1 0 1 Ribosome 1 0.500231643921131 1 0.999536712157737 hm5C_site_29262 DeepMRMD:1;iRNA_m5C:0.999536712157737 29263 chr1 45479691 45479691 1 + C T LUSC 45479708 + 45479688 45479728 41 CCTCACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTGG CCTTACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTGG < 41bp 1 0.276777159636871 1 0.233365386724472 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UROD ENSG00000126088 CDS Human protein_coding chr1:45479708 chr1:45479691 synonymous SNV . 0 4 hm5C_associated_SNPs_28976 0 0 1 0 1 Ribosome 1 0.500231643924145 1 0.999536712151709 hm5C_site_29263 DeepMRMD:1;iRNA_m5C:0.999536712151709 29264 chr11 68822717 68822717 1 + C A LUSC 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGAGGACGTGCGCTACCGCGCTGCTCCCTGGGA < 41bp 1 0.448696926154221 1 0.0774835050106049 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822717 nonsynonymous SNV 0.003 2 11 hm5C_associated_SNPs_28977 0 0 0 0 1 chromatin 1 0.500231643938557 1 0.999536712122887 hm5C_site_29264 DeepMRMD:1;iRNA_m5C:0.999536712122887 29265 chr3 148714590 148714590 1 + G C LUSC 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGACCCAGCGTGGCCTGACTGCTTCAATTCCGGAG < 41bp 1 0.447920727385407 1 0.132977396249771 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714590 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_28979 0 0 1 0 2 Cytosol 1 0.500231713249339 1 0.999536573501321 hm5C_site_29265 DeepMRMD:1;iRNA_m5C:0.999536573501321 29266 chr12 109637324 109637324 1 + C T LUSC 109637339 + 109637319 109637359 41 GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT GGCCATGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT < 41bp 1 0.243607432563505 1 0.697700560092926 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109637339 chr12:109637324 synonymous SNV . 0 6 hm5C_associated_SNPs_28980 0 0 1 0 1 Nucleus 1 0.500231638071681 0.604598879814148 0.999536723856638 hm5C_site_29266 DeepMRMD:0.604598879814148;iRNA_m5C:0.999536723856638 29267 chr22 30416160 30416160 1 + A G LUSC 30416167 + 30416147 30416187 41 CCCTTTTGAGACCAGAGGACCAAACGTGGACAGTTCTACAG CCCTTTTGAGACCGGAGGACCAAACGTGGACAGTTCTACAG < 41bp 1 0.172426657690187 1 0.334993660449982 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30416167 chr22:30416160 nonsynonymous SNV 0.986 4 14 hm5C_associated_SNPs_28981 0 0 1 0 0 Ribosome 1 0.500231643950434 1 0.999536712099132 hm5C_site_29267 DeepMRMD:1;iRNA_m5C:0.999536712099132 29268 chr11 46747431 46747431 1 + G T LUSC 46747436 + 46747416 46747456 41 TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA TCAAGTCACTGTAGCTATGACTCCACGCTCCGAAGGCTCCA < 41bp 1 0.699337174970404 1 0.956346154212952 experiment 0.601325650059193 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control F2 ENSG00000180210 CDS Human protein_coding chr11:46747436 chr11:46747431 synonymous SNV . 0 16 hm5C_associated_SNPs_28982 0 0 0 0 1 cytosol 1 0.500231643353577 0.087307691574096 0.999536713292846 hm5C_site_29268 DeepMRMD:0.087307691574096;iRNA_m5C:0.999536713292846 29269 chr11 61503245 61503245 1 + G T LUSC 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCT < 41bp 1 0.223833801168189 1 0.0798683762550354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503245 nonsynonymous SNV 0.995 3 41 hm5C_associated_SNPs_28983 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921502 1 0.999536712156997 hm5C_site_29269 DeepMRMD:1;iRNA_m5C:0.999536712156997 29270 chr14 90867645 90867645 1 + G T LUSC 90867648 + 90867628 90867668 41 TGATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTG TGATAAAGATGGCGATGTCACCATCACAACAAAGGAACTTG < 41bp 1 0.107284985749013 1 0.119933992624283 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867648 chr14:90867645 nonsynonymous SNV 0.976 2 18 hm5C_associated_SNPs_28984 0 0 1 0 1 Ribosome 1 0.500231948060022 1 0.999536103879955 hm5C_site_29270 DeepMRMD:1;iRNA_m5C:0.999536103879955 29271 chr14 90867645 90867645 1 + G T LUSC 90867649 + 90867629 90867669 41 GATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTGG GATAAAGATGGCGATGTCACCATCACAACAAAGGAACTTGG < 41bp 1 0.583155291584144 1 0.421074271202087 experiment 0.833689416831712 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867649 chr14:90867645 nonsynonymous SNV 0.976 2 17 hm5C_associated_SNPs_28985 0 0 1 0 1 Ribosome 1 0.500231643841318 1 0.999536712317364 hm5C_site_29271 DeepMRMD:1;iRNA_m5C:0.999536712317364 29272 chr14 90867644 90867644 1 + G T LUSC 90867648 + 90867628 90867668 41 TGATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTG TGATAAAGATGGCGATTGCACCATCACAACAAAGGAACTTG < 41bp 1 0.0937268620994132 1 0.0808326900005341 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867648 chr14:90867644 nonsynonymous SNV 0.936 2 17 hm5C_associated_SNPs_28986 0 0 1 0 1 Ribosome 1 0.500231755243223 1 0.999536489513554 hm5C_site_29272 DeepMRMD:1;iRNA_m5C:0.999536489513554 29273 chr14 90867644 90867644 1 + G T LUSC 90867649 + 90867629 90867669 41 GATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTGG GATAAAGATGGCGATTGCACCATCACAACAAAGGAACTTGG < 41bp 1 0.479467543411027 1 0.374849945306778 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CALM1 ENSG00000198668 CDS Human protein_coding chr14:90867649 chr14:90867644 nonsynonymous SNV 0.936 2 16 hm5C_associated_SNPs_28987 0 0 1 0 1 Ribosome 1 0.500231644509815 1 0.99953671098037 hm5C_site_29273 DeepMRMD:1;iRNA_m5C:0.99953671098037 29274 chr13 48828053 48828053 1 + A G LUSC 48828044 + 48828024 48828064 41 AGGTGTTATTCTAGGAGGAGCATACTTGTACAAATATTTTG AGGTGTTATTCTAGGAGGAGCATACTTGTGCAAATATTTTG < 41bp 1 0.0852270121878124 1 0.199811935424805 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITM2B ENSG00000136156 CDS Human protein_coding chr13:48828044 chr13:48828053 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_28988 0 0 1 0 1 Ribosome 1 0.500231640619178 1 0.999536718761645 hm5C_site_29274 DeepMRMD:1;iRNA_m5C:0.999536718761645 29275 chr1 186106668 186106668 1 + T C LUSC 186106679 + 186106659 186106699 41 TGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATCCAAAA TGGAGAGCCCGCAGTGTCACCTGTGGAAAAGGCATCCAAAA < 41bp 1 0.163471401860994 1 0.497988849878311 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186106679 chr1:186106668 nonsynonymous SNV 0.992 5 10 hm5C_associated_SNPs_28989 0 0 0 0 1 nucleus 1 0.500231641601413 1 0.999536716797175 hm5C_site_29275 DeepMRMD:1;iRNA_m5C:0.999536716797175 29276 chr13 48937009 48937009 1 + G T LUSC 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGTAGTGCA < 41bp 1 0.642194282362834 1 0.864266395568848 experiment 0.715611435274331 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48937009 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_28990 0 0 1 2 1 Nucleus 1 0.500231643929344 0.271467208862304 0.999536712141311 hm5C_site_29276 DeepMRMD:0.271467208862304;iRNA_m5C:0.999536712141311 29277 chr10 17278315 17278315 1 + T A LUSC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCCACTGGTTGATACCCACTCAAAA < 41bp 1 0.241965278615857 1 0.316703677177429 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278315 synonymous SNV . 0 20 hm5C_associated_SNPs_28991 0 0 1 0 2 Ribosome 1 0.500231643916177 1 0.999536712167645 hm5C_site_29277 DeepMRMD:1;iRNA_m5C:0.999536712167645 29278 chr6 7581122 7581122 1 + C T LUSC 7581119 + 7581099 7581139 41 TCCAGAACTCTCTGAAAGAGCTGCAGCTGCAGAAGCAGAAG TCCAGAACTCTCTGAAAGAGCTGTAGCTGCAGAAGCAGAAG < 41bp 1 0.515896661808926 1 0.284309685230255 experiment 0.968206676382149 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581119 chr6:7581122 stopgain 0.983 1 24 hm5C_associated_SNPs_28993 0 0 1 0 0 Nucleus 1 0.500245872874051 1 0.999508254251898 hm5C_site_29278 DeepMRMD:1;iRNA_m5C:0.999508254251898 29279 chr1 10165591 10165591 1 + G T LUSC 10165581 + 10165561 10165601 41 GCCTTTCCAACAGTATTCTCCGATTTTAAGGACTTGATTGG GCCTTTCCAACAGTATTCTCCGATTTTAAGTACTTGATTGG < 41bp 1 0.069887997566147 1 0.108505755662918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBE4B ENSG00000130939 CDS Human protein_coding chr1:10165581 chr1:10165591 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_28995 0 0 1 0 1 Cytosol 1 0.500231529076479 1 0.999536941847042 hm5C_site_29279 DeepMRMD:1;iRNA_m5C:0.999536941847042 29280 chr3 184021754 184021754 1 + G A LUSC 184021744 + 184021724 184021764 41 GCTCTTTGTAGTCAGGAGCTCTTCTTGCCTGTGGCATAGTG GCTCTTTGTAGTCAGGAGCTCTTCTTGCCTATGGCATAGTG < 41bp 1 0.174781262579698 1 0.110863745212555 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021744 chr3:184021754 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_28996 0 0 1 0 1 Ribosome 1 0.500231643921221 1 0.999536712157558 hm5C_site_29280 DeepMRMD:1;iRNA_m5C:0.999536712157558 29281 chrX 149671757 149671757 1 + G T LUSC 149671740 + 149671720 149671760 41 GGGCAGCTGGGATCCGAAGGCCTGGAGGCAGGTGCCCGCTC GGGCAGCTGGGATCCGAAGGCCTGGAGGCAGGTGCCCTCTC < 41bp 1 0.459855043125105 1 0.526938259601593 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149671740 chrX:149671757 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_28997 0 0 0 0 1 Nucleus 1 0.500231643921091 0.946123480796814 0.999536712157818 hm5C_site_29281 DeepMRMD:0.946123480796814;iRNA_m5C:0.999536712157818 29282 chrX 149671757 149671757 1 + G T LUSC 149671748 + 149671728 149671768 41 GGGATCCGAAGGCCTGGAGGCAGGTGCCCGCTCCACTACTG GGGATCCGAAGGCCTGGAGGCAGGTGCCCTCTCCACTACTG < 41bp 1 0.682467614862418 1 0.63179612159729 experiment 0.635064770275164 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149671748 chrX:149671757 nonsynonymous SNV 0.999 1 30 hm5C_associated_SNPs_28998 0 0 0 0 1 Nucleus 1 0.50023164677486 0.73640775680542 0.99953670645028 hm5C_site_29282 DeepMRMD:0.73640775680542;iRNA_m5C:0.99953670645028 29283 chr3 49049433 49049433 1 + G T LUSC 49049444 + 49049424 49049464 41 CCCTGCACAGACAGGTGCACCCTCTCTTCAGCCTGCCTGAT CCCTGCACATACAGGTGCACCCTCTCTTCAGCCTGCCTGAT < 41bp 1 0.0470728689034945 1 0.0312307775020599 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR6 ENSG00000178252 CDS Human protein_coding chr3:49049444 chr3:49049433 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_28999 0 0 1 0 0 Nucleus 1 0.500231643495852 1 0.999536713008296 hm5C_site_29283 DeepMRMD:1;iRNA_m5C:0.999536713008296 29284 chr15 41229676 41229676 1 + T G LUSC 41229671 + 41229651 41229691 41 CCCCCAGGGACTCCATGTACCAGTCTGTGTGTTTGATATCA CCCCCAGGGACTCCATGTACCAGTCGGTGTGTTTGATATCA < 41bp 1 0.170665158303449 1 0.619512856006622 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DLL4 ENSG00000128917 CDS Human protein_coding chr15:41229671 chr15:41229676 synonymous SNV . 0 26 hm5C_associated_SNPs_29000 0 0 0 0 2 Endoplasmic reticulum 1 0.500231663070028 0.760974287986756 0.999536673859945 hm5C_site_29284 DeepMRMD:0.760974287986756;iRNA_m5C:0.999536673859945 29285 chr19 30499996 30499996 1 + G A LUSC 30500003 + 30499983 30500023 41 CAAATGTGAATGCGATGCATCAAGTAACAGACTCTCATACT CAAATGTGAATGCAATGCATCAAGTAACAGACTCTCATACT < 41bp 1 0.47658474357764 1 0.165496915578842 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30500003 chr19:30499996 synonymous SNV . 0 14 hm5C_associated_SNPs_29001 0 0 1 0 1 Cytosol 1 0.500563770809434 1 0.998872458381133 hm5C_site_29285 DeepMRMD:1;iRNA_m5C:0.998872458381133 29286 chr7 128486411 128486411 1 + C T LUSC 128486405 + 128486385 128486425 41 AGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACC AGGTCGCTGTGCCCAAGAGCCCCTTCTGAGTGGGCGTGACC < 41bp 1 0.0315954353627884 1 0.0269523561000824 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486405 chr7:128486411 stopgain 0.992 1 27 hm5C_associated_SNPs_29002 0 0 1 0 1 chromatin 1 0.500231643921107 1 0.999536712157786 hm5C_site_29286 DeepMRMD:1;iRNA_m5C:0.999536712157786 29287 chr8 77620155 77620155 1 + A G LUSC 77620172 + 77620152 77620192 41 TTGAAGTGTATTGCCATTGGCAACCCTGTTCACCTAAAATG TTGGAGTGTATTGCCATTGGCAACCCTGTTCACCTAAAATG < 41bp 1 0.0935125900932581 1 0.0641325712203979 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77620172 chr8:77620155 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_29003 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29287 DeepMRMD:1;iRNA_m5C:0.999536712157815 29288 chr8 145139401 145139401 1 + G T LUSC 145139416 + 145139396 145139436 41 CTCCGGCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCT CTCCGTCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCT < 41bp 1 0.332737688508362 1 0.0210722386837006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139416 chr8:145139401 nonsynonymous SNV 0.736 4 6 hm5C_associated_SNPs_29006 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643919902 1 0.999536712160196 hm5C_site_29288 DeepMRMD:1;iRNA_m5C:0.999536712160196 29289 chr8 145139401 145139401 1 + G T LUSC 145139418 + 145139398 145139438 41 CCGGCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCTAC CCGTCCGCCCCCACGGCTCCCATGGCCTCTTCCTGCGCTAC < 41bp 1 0.545809009819456 1 0.0328400135040283 experiment 0.908381980361088 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139418 chr8:145139401 nonsynonymous SNV 0.736 4 4 hm5C_associated_SNPs_29007 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921086 1 0.999536712157827 hm5C_site_29289 DeepMRMD:1;iRNA_m5C:0.999536712157827 29290 chr16 84872284 84872284 1 + G T LUSC 84872297 + 84872277 84872317 41 TCCTCATGCTGCACAACAAGCTTCGGGGCCAGGTGCAGCCT TCCTCATTCTGCACAACAAGCTTCGGGGCCAGGTGCAGCCT < 41bp 1 0.449159157948878 1 0.067629337310791 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84872297 chr16:84872284 nonsynonymous SNV 0.944 0 8 hm5C_associated_SNPs_29008 0 0 0 0 1 Nucleus 1 0.500231643309582 1 0.999536713380836 hm5C_site_29290 DeepMRMD:1;iRNA_m5C:0.999536713380836 29291 chr14 105177440 105177440 1 + G T LUSC 105177427 + 105177407 105177447 41 CCCTCCCAGGGCAGCCACACCGGTGACGCCGACGGCTTCAA CCCTCCCAGGGCAGCCACACCGGTGACGCCGACTGCTTCAA < 41bp 1 0.468434376489265 1 0.674362897872925 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105177427 chr14:105177440 nonsynonymous SNV 0.537 4 34 hm5C_associated_SNPs_29009 0 0 1 0 2 Cytosol 1 0.500231643921092 0.65127420425415 0.999536712157815 hm5C_site_29291 DeepMRMD:0.65127420425415;iRNA_m5C:0.999536712157815 29292 chr1 46497091 46497091 1 + A T LUSC 46497074 + 46497054 46497094 41 GGCCTACAGCTATGGAGACCCGAGGCCGTGGGACCTCACAG GGCCTACAGCTATGGAGACCCGAGGCCGTGGGACCTCTCAG < 41bp 1 0.67419662146809 1 0.847663044929504 experiment 0.65160675706382 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MAST2 ENSG00000086015 CDS Human protein_coding chr1:46497074 chr1:46497091 synonymous SNV . 0 38 hm5C_associated_SNPs_29010 0 0 1 0 1 Ribosome 1 0.500231643921092 0.304673910140992 0.999536712157815 hm5C_site_29292 DeepMRMD:0.304673910140992;iRNA_m5C:0.999536712157815 29293 chr5 68425360 68425360 1 + A T LUSC 68425373 + 68425353 68425393 41 CTGGCCTAAGTACTGGATTTCATGATGTTCTGGCTATGACA CTGGCCTTAGTACTGGATTTCATGATGTTCTGGCTATGACA < 41bp 1 0.55664351459657 1 0.346598744392395 experiment 0.88671297080686 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68425373 chr5:68425360 synonymous SNV . 0 8 hm5C_associated_SNPs_29011 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29293 DeepMRMD:1;iRNA_m5C:0.999536712157815 29294 chr7 4823042 4823042 1 + C T LUSC 4823023 + 4823003 4823043 41 GAGCCGGCAGCCTGAGGGACCCAGCCTCAGACACCTCCTCC GAGCCGGCAGCCTGAGGGACCCAGCCTCAGACACCTCCTTC < 41bp 1 0.194213131870161 1 0.312743276357651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4823023 chr7:4823042 synonymous SNV . 0 40 hm5C_associated_SNPs_29012 0 0 0 0 0 chromatin 1 0.500231643921094 1 0.999536712157811 hm5C_site_29294 DeepMRMD:1;iRNA_m5C:0.999536712157811 29295 chr18 9182474 9182474 1 + C G LUSC 9182456 + 9182436 9182476 41 CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAAATTCTG CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAAATTGTG < 41bp 1 0.0780043190960045 1 0.0649958252906799 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD12 ENSG00000101745 CDS Human protein_coding chr18:9182456 chr18:9182474 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_29013 0 0 1 0 2 Cytosol 1 0.500231639453934 1 0.999536721092132 hm5C_site_29295 DeepMRMD:1;iRNA_m5C:0.999536721092132 29296 chr7 99956625 99956625 1 + G T LUSC 99956624 + 99956604 99956644 41 ACCAGTCTGTGTATTTCTGCCGAGTCGAGCTGGACACCCGG ACCAGTCTGTGTATTTCTGCCTAGTCGAGCTGGACACCCGG < 41bp 1 0.515691900312618 1 0.205982029438019 experiment 0.968616199374764 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956624 chr7:99956625 nonsynonymous SNV 0.164 3 22 hm5C_associated_SNPs_29014 0 0 1 0 0 Cytosol 1 0.500231643919921 1 0.999536712160158 hm5C_site_29296 DeepMRMD:1;iRNA_m5C:0.999536712160158 29297 chr7 99956625 99956625 1 + G T LUSC 99956638 + 99956618 99956658 41 TTCTGCCGAGTCGAGCTGGACACCCGGAGATCAGGGAGGCA TTCTGCCTAGTCGAGCTGGACACCCGGAGATCAGGGAGGCA < 41bp 1 0.27598415990861 1 0.0340757668018341 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956638 chr7:99956625 nonsynonymous SNV 0.164 3 8 hm5C_associated_SNPs_29016 0 0 1 0 0 Cytosol 1 0.500231643897348 1 0.999536712205304 hm5C_site_29297 DeepMRMD:1;iRNA_m5C:0.999536712205304 29298 chr10 103919289 103919289 1 + G C LUSC 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGACGAGCAAGAGGAGCAAAAAAAACCCATGAAAAAT < 41bp 1 0.504117138642786 1 0.49727389216423 experiment 0.991765722714428 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919289 nonsynonymous SNV 0.977 3 12 hm5C_associated_SNPs_29017 0 0 1 0 2 Nucleus 1 0.500231643921062 1 0.999536712157876 hm5C_site_29298 DeepMRMD:1;iRNA_m5C:0.999536712157876 29299 chr2 28002352 28002352 1 + G T LUSC 28002338 + 28002318 28002358 41 TCGTGGAAAAGAAAAAAATACGCTCCCTTTAAACGGTGGAT TCGTGGAAAAGAAAAAAATACGCTCCCTTTAAACTGTGGAT < 41bp 1 0.215967802278179 1 0.223286330699921 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPL33 ENSG00000243147 CDS Human protein_coding chr2:28002338 chr2:28002352 nonsynonymous SNV 0.698 1 35 hm5C_associated_SNPs_29018 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29299 DeepMRMD:1;iRNA_m5C:0.999536712157815 29300 chr5 102472515 102472515 1 + C G LUSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATCTGATACAAGATAGG < 41bp 1 0.388813848474402 1 0.190113127231598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472515 synonymous SNV . 0 29 hm5C_associated_SNPs_29019 0 0 1 2 2 Cytosol 1 0.500231643987398 1 0.999536712025204 hm5C_site_29300 DeepMRMD:1;iRNA_m5C:0.999536712025204 29301 chr10 17277852 17277852 1 + C T LUSC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTTCTTTGCCTCTTCCAAACTTTTCCTCCCTG < 41bp 1 0.0664302417800743 1 0.443943440914154 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277852 synonymous SNV . 0 15 hm5C_associated_SNPs_29020 0 0 1 1 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29301 DeepMRMD:1;iRNA_m5C:0.999536712157815 29302 chr17 7463198 7463198 1 + G A LUSC 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACACCACC < 41bp 1 0.403183161306742 1 0.449590593576431 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463198 nonsynonymous SNV 0.969 0 36 hm5C_associated_SNPs_29021 0 0 0 0 3 unknown 1 0.500231652354761 1 0.999536695290477 hm5C_site_29302 DeepMRMD:1;iRNA_m5C:0.999536695290477 29303 chr12 53428431 53428431 1 + G T LUSC 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACTGGAACGGTCGAGGACAGGAAGTGAG < 41bp 1 0.235293085657831 1 0.526359677314758 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428431 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_29022 0 0 1 0 2 Cytosol 1 0.500231643960907 0.947280645370484 0.999536712078186 hm5C_site_29303 DeepMRMD:0.947280645370484;iRNA_m5C:0.999536712078186 29304 chrX 73045978 73045978 1 + G C LUSC 73045992 - 73045972 73046012 41 TACACAGATGTGCCAGACTTCTGAGAAGCACCTGCCAGCAA TACACAGATGTGCCAGACTTCTGAGAAGCACCTGGCAGCAA < 41bp 1 0.532287030623885 1 0.661497056484222 experiment 0.935425938752229 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045992 chrX:73045978 . . 0 35 hm5C_associated_SNPs_29023 0 0 1 1 0 unknown 1 0.500231643919545 0.677005887031556 0.999536712160909 hm5C_site_29304 DeepMRMD:0.677005887031556;iRNA_m5C:0.999536712160909 29305 chrX 73045978 73045978 1 + G C LUSC 73045995 - 73045975 73046015 41 AAATACACAGATGTGCCAGACTTCTGAGAAGCACCTGCCAG AAATACACAGATGTGCCAGACTTCTGAGAAGCACCTGGCAG < 41bp 1 0.138119273995158 1 0.0561209917068481 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045995 chrX:73045978 . . 0 38 hm5C_associated_SNPs_29024 0 0 1 1 0 unknown 1 0.500231643889556 1 0.999536712220888 hm5C_site_29305 DeepMRMD:1;iRNA_m5C:0.999536712220888 29306 chr20 55088446 55088446 1 + A G LUSC 55088433 + 55088413 55088453 41 GGCACCAAGGAGGATGTGGACGTGCTGAAGACAAGGATGGA GGCACCAAGGAGGATGTGGACGTGCTGAAGACAGGGATGGA < 41bp 1 0.465451240020176 1 0.0875260829925537 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55088433 chr20:55088446 nonsynonymous SNV 0.959 3 34 hm5C_associated_SNPs_29025 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29306 DeepMRMD:1;iRNA_m5C:0.999536712157815 29307 chr4 144336807 144336807 1 + A G LUSC 144336803 + 144336783 144336823 41 AAAAAAGAGTTTGAAAACAGCTACATTTTTGATATCAACAC AAAAAAGAGTTTGAAAACAGCTACGTTTTTGATATCAACAC < 41bp 1 0.432303414939207 1 0.106014400720596 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144336803 chr4:144336807 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_29026 0 0 1 0 0 chromatin 1 0.500231766896076 1 0.999536466207848 hm5C_site_29307 DeepMRMD:1;iRNA_m5C:0.999536466207848 29308 chr2 32773032 32773032 1 + C T LUSC 32773028 + 32773008 32773048 41 CTTCTGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGG CTTCTGGGTGGGATGTGGAACAAGTCTTAACTAAGCAAAGG < 41bp 1 0.197787474064207 1 0.436412006616592 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773028 chr2:32773032 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_29027 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29308 DeepMRMD:1;iRNA_m5C:0.999536712157815 29309 chr2 32773032 32773032 1 + C T LUSC 32773033 + 32773013 32773053 41 GGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGGCTGGA GGGTGGGATGTGGAACAAGTCTTAACTAAGCAAAGGCTGGA < 41bp 1 0.266631013187191 1 0.0667303502559662 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773033 chr2:32773032 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_29028 0 0 1 0 1 Nucleus 1 0.500231644178092 1 0.999536711643816 hm5C_site_29309 DeepMRMD:1;iRNA_m5C:0.999536711643816 29310 chr2 32773032 32773032 1 + C T LUSC 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TGGAACAAGTCTTAACTAAGCAAAGGCTGGAAGAGGAACAT < 41bp 1 0.176917060463513 1 0.546582698822021 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773032 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_29029 0 0 1 0 1 Nucleus 1 0.500231643959688 0.906834602355958 0.999536712080623 hm5C_site_29310 DeepMRMD:0.906834602355958;iRNA_m5C:0.999536712080623 29311 chr14 105355929 105355929 1 + A C LUSC 105355938 + 105355918 105355958 41 ACGGCTCCCCCAAACACACACGCTCCCACACCTCAACAGCC ACGGCTCCCCCCAACACACACGCTCCCACACCTCAACAGCC < 41bp 1 0.0407330617466387 1 0.124820947647095 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105355938 chr14:105355929 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_29030 0 0 1 0 1 Ribosome 1 0.500238849124066 1 0.999522301751867 hm5C_site_29311 DeepMRMD:1;iRNA_m5C:0.999522301751867 29312 chr6 27833317 27833317 1 + A T LUSC 27833336 + 27833316 27833356 41 GAGATCCTGGAGCTGGCGGGCAACGCCGCCCGCGACAACAA GTGATCCTGGAGCTGGCGGGCAACGCCGCCCGCGACAACAA < 41bp 1 0.664828382300794 1 0.461272597312927 experiment 0.670343235398412 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AL ENSG00000198374 CDS Human other chr6:27833336 chr6:27833317 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_29031 0 0 1 0 0 exosome 1 0.500231648131486 1 0.999536703737028 hm5C_site_29312 DeepMRMD:1;iRNA_m5C:0.999536703737028 29313 chr22 23438367 23438367 1 + G T LUSC 23438366 + 23438346 23438386 41 ACTACCTGAACGACCTGGAGCGCATCGCCGCAGCTGACTAT ACTACCTGAACGACCTGGAGCTCATCGCCGCAGCTGACTAT < 41bp 1 0.17404457794051 1 0.02409827709198 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438366 chr22:23438367 nonsynonymous SNV 0.970 1 22 hm5C_associated_SNPs_29032 0 0 1 0 0 Ribosome 1 0.500231687132418 1 0.999536625735164 hm5C_site_29313 DeepMRMD:1;iRNA_m5C:0.999536625735164 29314 chr16 31090482 31090482 1 + G T LUSC 31090463 + 31090443 31090483 41 TGCAGCTCTCGGAAGCAGAGCTGCTGAATCAGCTGCAGCGG TGCAGCTCTCGGAAGCAGAGCTGCTGAATCAGCTGCAGCTG < 41bp 1 0.403379111434163 1 0.0531512498855591 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31090463 chr16:31090482 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_29033 0 0 1 0 0 Endoplasmic reticulum 1 0.500231743563935 1 0.99953651287213 hm5C_site_29314 DeepMRMD:1;iRNA_m5C:0.99953651287213 29315 chr12 6618926 6618926 1 + G T LUSC 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTTCAGCACTT < 41bp 1 0.146720960332546 1 0.066021054983139 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618926 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_29034 0 0 1 0 2 Nucleus 1 0.500231643920408 1 0.999536712159185 hm5C_site_29315 DeepMRMD:1;iRNA_m5C:0.999536712159185 29316 chrX 70787360 70787360 1 + G A LUSC 70787359 + 70787339 70787379 41 CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGTGTACTC CCCTATTTTAGATTCTGAAGCATGTTCCCAATAGTGTACTC < 41bp 1 0.191996423051861 1 0.0648396015167236 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70787359 chrX:70787360 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_29035 0 0 1 0 1 Nucleus 1 0.50023164392091 1 0.99953671215818 hm5C_site_29316 DeepMRMD:1;iRNA_m5C:0.99953671215818 29317 chr5 159849867 159849867 1 + C G LUSC 159849863 + 159849843 159849883 41 GTCTGTAAAGACCAAGGGACCCCTCAAACAAAAACAGCCAA GTCTGTAAAGACCAAGGGACCCCTGAAACAAAAACAGCCAA < 41bp 1 0.345237997884641 1 0.192426204681396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTTG1 ENSG00000164611 CDS Human protein_coding chr5:159849863 chr5:159849867 synonymous SNV . 0 25 hm5C_associated_SNPs_29036 0 0 1 0 1 Ribosome 1 0.500231641857059 1 0.999536716285882 hm5C_site_29317 DeepMRMD:1;iRNA_m5C:0.999536716285882 29318 chr10 7785196 7785196 1 + T A LUSC 7785208 + 7785188 7785228 41 AAAAATCCTCAACCTGGTTTCTGACCCAGAATCAGGTAAAA AAAAATCCACAACCTGGTTTCTGACCCAGAATCAGGTAAAA < 41bp 1 0.121442518045363 1 0.338959902524948 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7785208 chr10:7785196 nonsynonymous SNV 0.997 4 9 hm5C_associated_SNPs_29037 0 0 0 0 2 cytosol 1 0.500231643921096 1 0.999536712157809 hm5C_site_29318 DeepMRMD:1;iRNA_m5C:0.999536712157809 29319 chr19 19308355 19308355 1 + C T LUSC 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGATGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC < 41bp 1 0.376575266356144 1 0.0997674763202667 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308355 synonymous SNV . 0 6 hm5C_associated_SNPs_29038 0 0 1 0 2 Ribosome 1 0.500231643382729 1 0.999536713234542 hm5C_site_29319 DeepMRMD:1;iRNA_m5C:0.999536713234542 29320 chr19 19308355 19308355 1 + C T LUSC 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGATGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC < 41bp 1 0.293116060165924 1 0.0509238541126251 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308355 synonymous SNV . 0 5 hm5C_associated_SNPs_29039 0 0 1 0 2 Ribosome 1 0.500231644191081 1 0.999536711617838 hm5C_site_29320 DeepMRMD:1;iRNA_m5C:0.999536711617838 29321 chr19 7528717 7528717 1 + G A LUSC 7528733 + 7528713 7528753 41 TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC TCCAAAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC < 41bp 1 0.341290219908774 1 0.38555920124054 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528733 chr19:7528717 synonymous SNV . 0 5 hm5C_associated_SNPs_29040 0 0 0 0 1 Cytosol 1 0.500231643921098 1 0.999536712157805 hm5C_site_29321 DeepMRMD:1;iRNA_m5C:0.999536712157805 29322 chr16 70589051 70589051 1 + A T LUSC 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC TGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC < 41bp 1 0.297885841759736 1 0.111404359340668 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589051 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_29041 0 0 1 0 2 Cytosol 1 0.500232513231378 1 0.999534973537245 hm5C_site_29322 DeepMRMD:1;iRNA_m5C:0.999534973537245 29323 chr1 2160680 2160680 1 + G C LUSC 2160685 + 2160665 2160705 41 ACGGCCGACCAGCTGGAGATCCTCAAAGTCATGGGCATCCT ACGGCCGACCAGCTGCAGATCCTCAAAGTCATGGGCATCCT < 41bp 1 0.203098415639623 1 0.0185945630073547 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKI ENSG00000157933 CDS Human protein_coding chr1:2160685 chr1:2160680 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_29042 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921065 1 0.99953671215787 hm5C_site_29323 DeepMRMD:1;iRNA_m5C:0.99953671215787 29324 chr1 223943220 223943220 1 + G C LUSC 223943200 + 223943180 223943220 41 AGACACATTCTGGATGAACCCTCAGTACCTGATCAAGCTGG AGACACATTCTGGATGAACCCTCAGTACCTGATCAAGCTGC < 41bp 1 0.67460467332624 1 0.484456688165665 experiment 0.65079065334752 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943200 chr1:223943220 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_29043 0 0 1 0 1 Ribosome 1 0.500231699767464 1 0.999536600465071 hm5C_site_29324 DeepMRMD:1;iRNA_m5C:0.999536600465071 29325 chr1 223943220 223943220 1 + G C LUSC 223943207 + 223943187 223943227 41 TTCTGGATGAACCCTCAGTACCTGATCAAGCTGGAGGAGGA TTCTGGATGAACCCTCAGTACCTGATCAAGCTGCAGGAGGA < 41bp 1 0.430796922531069 1 0.0580410361289978 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943207 chr1:223943220 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_29044 0 0 1 0 1 Ribosome 1 0.500231492832525 1 0.99953701433495 hm5C_site_29325 DeepMRMD:1;iRNA_m5C:0.99953701433495 29326 chr19 19627035 19627035 1 + G T LUSC 19627040 + 19627020 19627060 41 GGGACCGGAAGTGTGGGATACTGCGAGTATGGCGGCGTCAA GGGACCGGAAGTGTGTGATACTGCGAGTATGGCGGCGTCAA < 41bp 1 0.634205627571122 1 0.384364187717438 experiment 0.731588744857755 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19627040 chr19:19627035 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_29045 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921082 1 0.999536712157836 hm5C_site_29326 DeepMRMD:1;iRNA_m5C:0.999536712157836 29327 chr10 118314718 118314718 1 + G T LUSC 118314708 + 118314688 118314728 41 AGGGTTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTG AGGGTTGGACCCAGCAGAACCTTGCTTTCATGGCACACCTG < 41bp 1 0.34850079769123 1 0.1512850522995 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314708 chr10:118314718 nonsynonymous SNV 0.885 1 31 hm5C_associated_SNPs_29046 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29327 DeepMRMD:1;iRNA_m5C:0.999536712157815 29328 chr10 118314718 118314718 1 + G T LUSC 118314712 + 118314692 118314732 41 TTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTGAATT TTGGACCCAGCAGAACCTTGCTTTCATGGCACACCTGAATT < 41bp 1 0.0451316810301951 1 0.0500419735908508 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314712 chr10:118314718 nonsynonymous SNV 0.885 1 27 hm5C_associated_SNPs_29047 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29328 DeepMRMD:1;iRNA_m5C:0.999536712157815 29329 chr10 118314718 118314718 1 + G T LUSC 118314721 + 118314701 118314741 41 GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATT GCAGAACCTTGCTTTCATGGCACACCTGAATTAGTCCGATT < 41bp 1 0.344846913994046 1 0.07645583152771 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314721 chr10:118314718 nonsynonymous SNV 0.885 1 18 hm5C_associated_SNPs_29048 0 0 0 0 1 unknown 1 0.500230929216024 1 0.999538141567952 hm5C_site_29329 DeepMRMD:1;iRNA_m5C:0.999538141567952 29330 chr10 118314718 118314718 1 + G T LUSC 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTGCTTTCATGGCACACCTGAATTAGTCCGATTGG < 41bp 1 0.446209807455714 1 0.042147159576416 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314718 nonsynonymous SNV 0.885 1 16 hm5C_associated_SNPs_29049 0 0 0 0 1 unknown 1 0.500231643893387 1 0.999536712213226 hm5C_site_29330 DeepMRMD:1;iRNA_m5C:0.999536712213226 29331 chr10 118314718 118314718 1 + G T LUSC 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTGCTTTCATGGCACACCTGAATTAGTCCGATTGGAC < 41bp 1 0.214503097409671 1 0.111430436372757 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314718 nonsynonymous SNV 0.885 1 14 hm5C_associated_SNPs_29050 0 0 0 0 1 unknown 1 0.500231643834894 1 0.999536712330211 hm5C_site_29331 DeepMRMD:1;iRNA_m5C:0.999536712330211 29332 chr10 118314718 118314718 1 + G T LUSC 118314726 + 118314706 118314746 41 ACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC ACCTTGCTTTCATGGCACACCTGAATTAGTCCGATTGGACC < 41bp 1 0.657107135185578 1 0.238413363695145 experiment 0.685785729628844 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314726 chr10:118314718 nonsynonymous SNV 0.885 1 13 hm5C_associated_SNPs_29051 0 0 0 0 1 unknown 1 0.500234553600726 1 0.999530892798547 hm5C_site_29332 DeepMRMD:1;iRNA_m5C:0.999530892798547 29333 chr10 118314718 118314718 1 + G T LUSC 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CATGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC < 41bp 1 0.433521539524961 1 0.300393253564835 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314718 nonsynonymous SNV 0.885 1 3 hm5C_associated_SNPs_29052 0 0 0 0 1 unknown 1 0.500231643919108 1 0.999536712161784 hm5C_site_29333 DeepMRMD:1;iRNA_m5C:0.999536712161784 29334 chr10 118314718 118314718 1 + G T LUSC 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC ATGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC < 41bp 1 0.241567715088603 1 0.139765679836273 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314718 nonsynonymous SNV 0.885 1 2 hm5C_associated_SNPs_29053 0 0 0 0 1 unknown 1 0.50023164393363 1 0.999536712132741 hm5C_site_29334 DeepMRMD:1;iRNA_m5C:0.999536712132741 29335 chr10 118314719 118314719 1 + G T LUSC 118314708 + 118314688 118314728 41 AGGGTTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTG AGGGTTGGACCCAGCAGAACCTTGCTTTCAGTGCACACCTG < 41bp 1 0.403751076092529 1 0.315926194190979 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314708 chr10:118314719 nonsynonymous SNV 0.881 4 32 hm5C_associated_SNPs_29054 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29335 DeepMRMD:1;iRNA_m5C:0.999536712157815 29336 chr10 118314719 118314719 1 + G T LUSC 118314712 + 118314692 118314732 41 TTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTGAATT TTGGACCCAGCAGAACCTTGCTTTCAGTGCACACCTGAATT < 41bp 1 0.0343889389598274 1 0.0202181041240692 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314712 chr10:118314719 nonsynonymous SNV 0.881 4 28 hm5C_associated_SNPs_29055 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_29336 DeepMRMD:1;iRNA_m5C:0.999536712157816 29337 chr10 118314719 118314719 1 + G T LUSC 118314721 + 118314701 118314741 41 GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATT GCAGAACCTTGCTTTCAGTGCACACCTGAATTAGTCCGATT < 41bp 1 0.285645663878826 1 0.0443530082702637 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314721 chr10:118314719 nonsynonymous SNV 0.881 4 19 hm5C_associated_SNPs_29056 0 0 0 0 1 unknown 1 0.500231643921163 1 0.999536712157675 hm5C_site_29337 DeepMRMD:1;iRNA_m5C:0.999536712157675 29338 chr10 118314719 118314719 1 + G T LUSC 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTGCTTTCAGTGCACACCTGAATTAGTCCGATTGG < 41bp 1 0.535940038095107 1 0.0402654409408569 experiment 0.928119923809787 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314719 nonsynonymous SNV 0.881 4 17 hm5C_associated_SNPs_29057 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29338 DeepMRMD:1;iRNA_m5C:0.999536712157815 29339 chr10 118314719 118314719 1 + G T LUSC 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTGCTTTCAGTGCACACCTGAATTAGTCCGATTGGAC < 41bp 1 0.241274260548521 1 0.312053978443146 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314719 nonsynonymous SNV 0.881 4 15 hm5C_associated_SNPs_29058 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29339 DeepMRMD:1;iRNA_m5C:0.999536712157815 29340 chr10 118314719 118314719 1 + G T LUSC 118314726 + 118314706 118314746 41 ACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC ACCTTGCTTTCAGTGCACACCTGAATTAGTCCGATTGGACC < 41bp 1 0.666917377107947 1 0.497242957353592 experiment 0.666165245784107 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314726 chr10:118314719 nonsynonymous SNV 0.881 4 14 hm5C_associated_SNPs_29059 0 0 0 0 1 unknown 1 0.5002320121534 1 0.999535975693199 hm5C_site_29340 DeepMRMD:1;iRNA_m5C:0.999535975693199 29341 chr10 118314719 118314719 1 + G T LUSC 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGTGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC < 41bp 1 0.376632782917408 1 0.228259444236755 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314719 nonsynonymous SNV 0.881 4 4 hm5C_associated_SNPs_29060 0 0 0 0 1 unknown 1 0.500231643920774 1 0.999536712158452 hm5C_site_29341 DeepMRMD:1;iRNA_m5C:0.999536712158452 29342 chr10 118314719 118314719 1 + G T LUSC 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGTGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC < 41bp 1 0.279364508614847 1 0.122864753007889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314719 nonsynonymous SNV 0.881 4 3 hm5C_associated_SNPs_29061 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_29342 DeepMRMD:1;iRNA_m5C:0.999536712157816 29343 chr6 27806734 27806734 1 + G T LUSC 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCTTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG < 41bp 1 0.591934556786545 1 0.105237513780594 experiment 0.81613088642691 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806734 nonsynonymous SNV 0.992 0 9 hm5C_associated_SNPs_29062 0 0 1 0 1 Ribosome 1 0.500231644000474 1 0.999536711999052 hm5C_site_29343 DeepMRMD:1;iRNA_m5C:0.999536711999052 29344 chr13 39454731 39454731 1 + G T LUSC 39454741 + 39454721 39454761 41 AACAGCCCCAGCTCTGCAGTCAGCCTGGTCACTGTGGTGGG AACAGCCCCATCTCTGCAGTCAGCCTGGTCACTGTGGTGGG < 41bp 1 0.187204524758176 1 0.471936285495758 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FREM2 ENSG00000150893 CDS Human protein_coding chr13:39454741 chr13:39454731 nonsynonymous SNV 0.985 1 11 hm5C_associated_SNPs_29063 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29344 DeepMRMD:1;iRNA_m5C:0.999536712157815 29345 chr15 63019364 63019364 1 + G T LUSC 63019352 + 63019332 63019372 41 GCTCCTCCATGGCACAGCTGCTGACCTGTGCTGCTCAAGGC GCTCCTCCATGGCACAGCTGCTGACCTGTGCTTCTCAAGGC < 41bp 1 0.130109083006605 1 0.138373911380768 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63019352 chr15:63019364 nonsynonymous SNV 0.990 1 33 hm5C_associated_SNPs_29064 0 0 0 0 2 Nucleus 1 0.500232266754047 1 0.999535466491906 hm5C_site_29345 DeepMRMD:1;iRNA_m5C:0.999535466491906 29346 chr22 30818321 30818321 1 + C T LUSC 30818334 + 30818314 30818354 41 TCAATTTCACTGTGGAGGTCCTGCTTCCAGACAAAGCCTCA TCAATTTTACTGTGGAGGTCCTGCTTCCAGACAAAGCCTCA < 41bp 1 0.203439474004772 1 0.137955993413925 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC14L2 ENSG00000100003 CDS Human protein_coding chr22:30818334 chr22:30818321 synonymous SNV . 0 8 hm5C_associated_SNPs_29066 0 0 0 1 1 chromatin 1 0.500230881517885 1 0.99953823696423 hm5C_site_29346 DeepMRMD:1;iRNA_m5C:0.99953823696423 29347 chr5 140182576 140182576 1 + T A LUSC 140182596 + 140182576 140182616 41 TGCAGACTCAGGCTACAACGCGTGGCTTTCGTATGAGCTGC AGCAGACTCAGGCTACAACGCGTGGCTTTCGTATGAGCTGC < 41bp 1 0.482940150480581 1 0.742680132389069 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PCDHA3 ENSG00000255408 CDS Human protein_coding chr5:140182596 chr5:140182576 nonsynonymous SNV 0.959 3 1 hm5C_associated_SNPs_29067 0 0 0 0 0 insoluble cytoplasm 1 0.500231638102991 0.514639735221862 0.999536723794018 hm5C_site_29347 DeepMRMD:0.514639735221862;iRNA_m5C:0.999536723794018 29348 chr7 44801184 44801184 1 + G A LUSC 44801172 + 44801152 44801192 41 TTCCAGCTGCGAGACTCAGTCTACAAGACCCTGATAATGAG TTCCAGCTGCGAGACTCAGTCTACAAGACCCTAATAATGAG < 41bp 1 0.609526575823136 1 0.88629949092865 experiment 0.780946848353727 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801172 chr7:44801184 synonymous SNV . 0 33 hm5C_associated_SNPs_29068 0 0 1 0 1 Cytosol 1 0.500231643921093 0.2274010181427 0.999536712157813 hm5C_site_29348 DeepMRMD:0.2274010181427;iRNA_m5C:0.999536712157813 29349 chr20 55968354 55968354 1 + G T LUSC 55968352 + 55968332 55968372 41 TAGGCTTTGCCATTGGGGTGCAGCAGCTGCACCCCACCTTG TAGGCTTTGCCATTGGGGTGCATCAGCTGCACCCCACCTTG < 41bp 1 0.168309445823761 1 0.0490858256816864 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968352 chr20:55968354 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_29069 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29349 DeepMRMD:1;iRNA_m5C:0.999536712157815 29350 chr20 55968354 55968354 1 + G T LUSC 55968361 + 55968341 55968381 41 CCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGG CCATTGGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGG < 41bp 1 0.0845508698693556 1 0.106679499149323 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968361 chr20:55968354 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_29070 0 0 1 0 2 Ribosome 1 0.500231638732632 1 0.999536722534737 hm5C_site_29350 DeepMRMD:1;iRNA_m5C:0.999536722534737 29351 chr20 55968354 55968354 1 + G T LUSC 55968363 + 55968343 55968383 41 ATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGAC ATTGGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGGAC < 41bp 1 0.290774144234464 1 0.155918061733246 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968363 chr20:55968354 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_29071 0 0 1 0 2 Ribosome 1 0.500231643906668 1 0.999536712186665 hm5C_site_29351 DeepMRMD:1;iRNA_m5C:0.999536712186665 29352 chr20 55968354 55968354 1 + G T LUSC 55968364 + 55968344 55968384 41 TTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACT TTGGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGGACT < 41bp 1 0.0180778131531267 1 0.103959500789642 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968364 chr20:55968354 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_29072 0 0 1 0 2 Ribosome 1 0.50023164325145 1 0.999536713497099 hm5C_site_29352 DeepMRMD:1;iRNA_m5C:0.999536713497099 29353 chr20 55968354 55968354 1 + G T LUSC 55968365 + 55968345 55968385 41 TGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTT TGGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGGACTT < 41bp 1 0.0675403300613662 1 0.0890116989612579 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968365 chr20:55968354 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_29073 0 0 1 0 2 Ribosome 1 0.500229273264861 1 0.999541453470279 hm5C_site_29353 DeepMRMD:1;iRNA_m5C:0.999541453470279 29354 chr20 55968354 55968354 1 + G T LUSC 55968366 + 55968346 55968386 41 GGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTTA GGGGTGCATCAGCTGCACCCCACCTTGATCCAGCGGACTTA < 41bp 1 0.198570301636669 1 0.241634219884872 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968366 chr20:55968354 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_29074 0 0 1 0 2 Ribosome 1 0.500231643921119 1 0.999536712157762 hm5C_site_29354 DeepMRMD:1;iRNA_m5C:0.999536712157762 29355 chr12 66724969 66724969 1 + G A LUSC 66724950 + 66724930 66724970 41 CCAGGGGTCCGAGGAGCAAACAGTTGTCTATGTGGTGGGGA CCAGGGGTCCGAGGAGCAAACAGTTGTCTATGTGGTGGGAA < 41bp 1 0.630610847000248 1 0.411431878805161 experiment 0.738778305999503 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HELB ENSG00000127311 CDS Human protein_coding chr12:66724950 chr12:66724969 synonymous SNV . 0 40 hm5C_associated_SNPs_29076 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29355 DeepMRMD:1;iRNA_m5C:0.999536712157815 29356 chr17 48595048 48595048 1 + G C LUSC 48595045 + 48595025 48595065 41 TTAAGAGAATTGCACTTGCTCGAGGGAACACCCAGGTTTGT TTAAGAGAATTGCACTTGCTCGACGGAACACCCAGGTTTGT < 41bp 1 0.57299936681882 1 0.409799605607986 experiment 0.85400126636236 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48595045 chr17:48595048 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_29077 0 0 0 0 2 exosome 1 0.500232191568765 1 0.99953561686247 hm5C_site_29356 DeepMRMD:1;iRNA_m5C:0.99953561686247 29357 chr13 98654843 98654843 1 + C A LUSC 98654834 + 98654814 98654854 41 TAAATTTTGTTTTACTTTTTCTCCAGGATCCTGTAAGTACC TAAATTTTGTTTTACTTTTTCTCCAGGATACTGTAAGTACC < 41bp 1 0.566392658013136 1 0.903576374053955 experiment 0.867214683973728 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IPO5 ENSG00000065150 CDS Human protein_coding chr13:98654834 chr13:98654843 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_29078 0 0 1 0 1 Ribosome 1 0.500231643751104 0.19284725189209 0.999536712497793 hm5C_site_29357 DeepMRMD:0.19284725189209;iRNA_m5C:0.999536712497793 29358 chr6 42975977 42975977 1 + A C LUSC 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGCG < 41bp 1 0.273251533470493 1 0.0647311508655548 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975977 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_29079 0 0 1 0 2 Ribosome 1 0.50023164497196 1 0.999536710056081 hm5C_site_29358 DeepMRMD:1;iRNA_m5C:0.999536710056081 29359 chr9 133507341 133507341 1 + A G LUSC 133507332 + 133507312 133507352 41 CTTTTACCTTTTCCCAGTACCTTTCCTCCAAGGAGCTCCGG CTTTTACCTTTTCCCAGTACCTTTCCTCCGAGGAGCTCCGG < 41bp 1 0.0571710700968052 1 0.0363085269927979 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507332 chr9:133507341 synonymous SNV . 0 30 hm5C_associated_SNPs_29081 0 0 1 0 2 Ribosome 1 0.500231652626163 1 0.999536694747673 hm5C_site_29359 DeepMRMD:1;iRNA_m5C:0.999536694747673 29360 chr7 100466148 100466148 1 + G T LUSC 100466155 + 100466135 100466175 41 CCTCCTGCCTACCGCACGGGCTCCCTGAAGCCAAATCCAGC CCTCCTGCCTACCTCACGGGCTCCCTGAAGCCAAATCCAGC < 41bp 1 0.158894740686435 1 0.0174156427383423 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466155 chr7:100466148 nonsynonymous SNV 0.279 0 14 hm5C_associated_SNPs_29082 0 0 0 0 1 Ribosome 1 0.500231643921015 1 0.99953671215797 hm5C_site_29360 DeepMRMD:1;iRNA_m5C:0.99953671215797 29361 chr2 242757847 242757847 1 + G T LUSC 242757827 + 242757807 242757847 41 GTCAGTGGGCCCCGGGAGTCCCCTCCAGCCTCCACTCCTCG GTCAGTGGGCCCCGGGAGTCCCCTCCAGCCTCCACTCCTCT < 41bp 1 0.090982791970818 1 0.0513059496879578 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NEU4 ENSG00000204099 CDS Human protein_coding chr2:242757827 chr2:242757847 nonsynonymous SNV 0.001 0 41 hm5C_associated_SNPs_29083 0 0 1 0 0 cytosol 1 0.500231643913839 1 0.999536712172322 hm5C_site_29361 DeepMRMD:1;iRNA_m5C:0.999536712172322 29362 chr9 7174680 7174680 1 + G A LUSC 7174666 + 7174646 7174686 41 TTTAAGAATGAATATGTGGCCGACCCTGTATACCGCACTTT TTTAAGAATGAATATGTGGCCGACCCTGTATACCACACTTT < 41bp 1 0.114114077993237 1 0.0356811881065369 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4C ENSG00000107077 CDS Human protein_coding chr9:7174666 chr9:7174680 nonsynonymous SNV 0.993 2 35 hm5C_associated_SNPs_29084 0 0 1 0 0 Nucleus 1 0.500231643964253 1 0.999536712071495 hm5C_site_29362 DeepMRMD:1;iRNA_m5C:0.999536712071495 29363 chr3 134851694 134851694 1 + G A LUSC 134851688 + 134851668 134851708 41 CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCC CATCTGCAAAAAGTGCCGGGCAGACCACCGGAGCTGCTCCC < 41bp 1 0.104847774128428 1 0.501296818256378 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851688 chr3:134851694 nonsynonymous SNV 0.995 3 27 hm5C_associated_SNPs_29085 0 0 0 0 0 exosome 1 0.500231643921093 0.997406363487244 0.999536712157813 hm5C_site_29363 DeepMRMD:0.997406363487244;iRNA_m5C:0.999536712157813 29364 chr19 19638848 19638848 1 + G T LUSC 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCCGCTGTGTGCCCCCCTTGATCGGGGAGCTG < 41bp 1 0.17859876738086 1 0.0209019184112549 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638848 nonsynonymous SNV 0.437 4 17 hm5C_associated_SNPs_29086 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643929824 1 0.999536712140352 hm5C_site_29364 DeepMRMD:1;iRNA_m5C:0.999536712140352 29365 chr20 44673662 44673662 1 + A G LUSC 44673677 + 44673657 44673697 41 TCTCCATGGGTAATTGTCATCGGATCCTTCTTCTCCACCTG TCTCCGTGGGTAATTGTCATCGGATCCTTCTTCTCCACCTG < 41bp 1 0.558423877778775 1 0.84635066986084 experiment 0.883152244442451 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44673677 chr20:44673662 synonymous SNV . 0 6 hm5C_associated_SNPs_29087 0 0 0 0 1 cytosol 1 0.500231643921219 0.30729866027832 0.999536712157562 hm5C_site_29365 DeepMRMD:0.30729866027832;iRNA_m5C:0.999536712157562 29366 chr13 26956969 26956969 1 + G T LUSC 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TTTTATTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA < 41bp 1 0.207800949186099 1 0.143760293722153 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956969 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_29088 0 0 1 0 2 Cytosol 1 0.500231643921664 1 0.999536712156673 hm5C_site_29366 DeepMRMD:1;iRNA_m5C:0.999536712156673 29367 chr2 74074729 74074729 1 + G T LUSC 74074746 + 74074726 74074766 41 AGTGCCTGACTTGGAGAAGCCCTCCTTAGATGTGTTCCCCA AGTTCCTGACTTGGAGAAGCCCTCCTTAGATGTGTTCCCCA < 41bp 1 0.113839835929505 1 0.106544435024261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74074746 chr2:74074729 synonymous SNV . 0 4 hm5C_associated_SNPs_29089 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29367 DeepMRMD:1;iRNA_m5C:0.999536712157815 29368 chr1 37947340 37947340 1 + T C LUSC 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATCGTGGCTTCCAACGACACATACCGTGACCTCCAAGG < 41bp 1 0.260893569333337 1 0.189013183116913 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947340 nonsynonymous SNV 0.992 4 11 hm5C_associated_SNPs_29091 0 0 0 0 1 Nucleus 1 0.50023164392461 1 0.999536712150779 hm5C_site_29368 DeepMRMD:1;iRNA_m5C:0.999536712150779 29369 chr1 37947340 37947340 1 + T C LUSC 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATCGTGGCTTCCAACGACACATACCGTGACCTCCAAGGCG < 41bp 1 0.135710169047654 1 0.0978012382984161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947340 nonsynonymous SNV 0.992 4 9 hm5C_associated_SNPs_29092 0 0 0 0 1 Nucleus 1 0.500231643638709 1 0.999536712722581 hm5C_site_29369 DeepMRMD:1;iRNA_m5C:0.999536712722581 29370 chr12 94562982 94562982 1 + C A LUSC 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATACATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT < 41bp 1 0.0548479835003925 1 0.0634486079216003 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94562982 synonymous SNV . 0 3 hm5C_associated_SNPs_29093 0 0 1 0 2 chromatin 1 0.500231643902552 1 0.999536712194896 hm5C_site_29370 DeepMRMD:1;iRNA_m5C:0.999536712194896 29371 chr15 63433798 63433798 1 + C T LUSC 63433784 + 63433764 63433804 41 AAGGAAACAAACGTATGGTTCGTGTAGAAAGCAACGGCATT AAGGAAACAAACGTATGGTTCGTGTAGAAAGCAATGGCATT < 41bp 1 0.264628700958303 1 0.0709071457386017 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LACTB ENSG00000103642 CDS Human protein_coding chr15:63433784 chr15:63433798 nonsynonymous SNV 0.983 2 35 hm5C_associated_SNPs_29094 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_29371 DeepMRMD:1;iRNA_m5C:0.999536712157815 29372 chr5 10254914 10254914 1 + G T LUSC 10254899 + 10254879 10254919 41 TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGAT TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGTATGAT < 41bp 1 0.123354394256932 1 0.0844016373157501 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254899 chr5:10254914 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_29096 0 0 1 0 1 Cytosol 1 0.500231896419642 1 0.999536207160716 hm5C_site_29372 DeepMRMD:1;iRNA_m5C:0.999536207160716 29373 chr5 10254914 10254914 1 + G T LUSC 10254903 + 10254883 10254923 41 CAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAA CAAGCTGATGGTGGAACTGTCCAAGTCTCAGTATGATGAAA < 41bp 1 0.260800059268405 1 0.222872763872147 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254903 chr5:10254914 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_29097 0 0 1 0 1 Cytosol 1 0.500231652424747 1 0.999536695150507 hm5C_site_29373 DeepMRMD:1;iRNA_m5C:0.999536695150507 29374 chr5 10254914 10254914 1 + G T LUSC 10254909 + 10254889 10254929 41 GATGGTGGAACTGTCCAAGTCTCAGGATGATGAAATTGGAG GATGGTGGAACTGTCCAAGTCTCAGTATGATGAAATTGGAG < 41bp 1 0.561144492012396 1 0.599666595458984 experiment 0.877711015975208 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10254909 chr5:10254914 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_29098 0 0 1 0 1 Cytosol 1 0.500231643921092 0.800666809082032 0.999536712157815 hm5C_site_29374 DeepMRMD:0.800666809082032;iRNA_m5C:0.999536712157815 29375 chr19 11114047 11114047 1 + G T LUSC 11114029 + 11114009 11114049 41 TTTCTAGGTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAA TTTCTAGGTATGAAGTAGCTCCGAGGTCTGATAGTGAATAA < 41bp 1 0.248932973608959 1 0.355674058198929 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114029 chr19:11114047 stopgain 1.000 1 39 hm5C_associated_SNPs_29099 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29375 DeepMRMD:1;iRNA_m5C:0.999536712157815 29376 chr19 11114047 11114047 1 + G T LUSC 11114036 + 11114016 11114056 41 GTATGAAGTAGCTCCGAGGTCTGATAGTGAAGAAAGTGGCT GTATGAAGTAGCTCCGAGGTCTGATAGTGAATAAAGTGGCT < 41bp 1 0.151715001471347 1 0.121902942657471 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114036 chr19:11114047 stopgain 1.000 1 32 hm5C_associated_SNPs_29100 0 0 1 0 2 Nucleus 1 0.500231638678442 1 0.999536722643116 hm5C_site_29376 DeepMRMD:1;iRNA_m5C:0.999536722643116 29377 chr19 11114047 11114047 1 + G T LUSC 11114055 + 11114035 11114075 41 TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGT TCTGATAGTGAATAAAGTGGCTCAGAAGAAGAGGAAGAGGT < 41bp 1 0.190448892434584 1 0.15461802482605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114055 chr19:11114047 stopgain 1.000 1 13 hm5C_associated_SNPs_29101 0 0 1 0 2 Nucleus 1 0.500231645043974 1 0.999536709912051 hm5C_site_29377 DeepMRMD:1;iRNA_m5C:0.999536709912051 29378 chr19 11114047 11114047 1 + G T LUSC 11114057 + 11114037 11114077 41 TGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGTAA TGATAGTGAATAAAGTGGCTCAGAAGAAGAGGAAGAGGTAA < 41bp 1 0.318417705570247 1 0.399770021438599 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114057 chr19:11114047 stopgain 1.000 1 11 hm5C_associated_SNPs_29102 0 0 1 0 2 Nucleus 1 0.500231639091458 1 0.999536721817085 hm5C_site_29378 DeepMRMD:1;iRNA_m5C:0.999536721817085 29379 chr7 114302136 114302136 1 + A G LUSC 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAGTCTTAGCC < 41bp 1 0.228226197449444 1 0.30824401974678 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302136 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_29103 0 0 1 3 1 Cytosol 1 0.500231644707655 1 0.99953671058469 hm5C_site_29379 DeepMRMD:1;iRNA_m5C:0.99953671058469 29380 chr16 57243027 57243027 1 + T G LUSC 57243043 + 57243023 57243063 41 GAGTTATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA GAGTGATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA < 41bp 1 0.181129401721725 1 0.0663314461708069 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57243043 chr16:57243027 synonymous SNV . 0 5 hm5C_associated_SNPs_29104 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29380 DeepMRMD:1;iRNA_m5C:0.999536712157815 29381 chr11 66282108 66282108 1 + C G LUSC 66282089 + 66282069 66282109 41 CTCAGACCCTACTTCAAGTTCAGCCTGCCCCAATTGCCTCC CTCAGACCCTACTTCAAGTTCAGCCTGCCCCAATTGCCTGC < 41bp 1 0.387433504593539 1 0.0917984545230865 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66282089 chr11:66282108 nonsynonymous SNV 0.932 1 40 hm5C_associated_SNPs_29105 0 0 1 0 1 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_29381 DeepMRMD:1;iRNA_m5C:0.999536712157815 29382 chr4 57881725 57881725 1 + C T LUSC 57881714 + 57881694 57881734 41 GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTA GAGGGAGATTCGGATCTATACGGATGCAGGCTGTATTTGTA < 41bp 1 0.631756023172699 1 0.732862532138824 experiment 0.736487953654603 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57881714 chr4:57881725 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_29106 0 0 1 0 2 Nucleus 1 0.500231643921399 0.534274935722352 0.999536712157201 hm5C_site_29382 DeepMRMD:0.534274935722352;iRNA_m5C:0.999536712157201 29383 chr16 66918558 66918558 1 + G C LUSC 66918554 + 66918534 66918574 41 CCAATTCCCCAGTGGAGGACCGGCGAGGTGTAGCCTCCTGC CCAATTCCCCAGTGGAGGACCGGCCAGGTGTAGCCTCCTGC < 41bp 1 0.425781784505713 1 0.0851967632770538 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PDP2 ENSG00000172840 CDS Human protein_coding chr16:66918554 chr16:66918558 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_29107 0 0 1 0 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29383 DeepMRMD:1;iRNA_m5C:0.999536712157815 29384 chr22 24573530 24573530 1 + G A LUSC 24573545 + 24573525 24573565 41 AGTGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAG AGTGAAACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAG < 41bp 1 0.0909018271077343 1 0.352539956569672 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573545 chr22:24573530 synonymous SNV . 0 6 hm5C_associated_SNPs_29108 0 0 1 0 1 Cytosol 1 0.500250744359896 1 0.999498511280208 hm5C_site_29384 DeepMRMD:1;iRNA_m5C:0.999498511280208 29385 chr22 24573530 24573530 1 + G A LUSC 24573547 + 24573527 24573567 41 TGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCT TGAAACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCT < 41bp 1 0.126611242657077 1 0.345319598913193 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573547 chr22:24573530 synonymous SNV . 0 4 hm5C_associated_SNPs_29109 0 0 1 0 1 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_29385 DeepMRMD:1;iRNA_m5C:0.999536712157806 29386 chr22 24573530 24573530 1 + G A LUSC 24573549 + 24573529 24573569 41 AGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCC AAACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCC < 41bp 1 0.14104660375314 1 0.505959451198578 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573549 chr22:24573530 synonymous SNV . 0 2 hm5C_associated_SNPs_29110 0 0 1 0 1 Cytosol 1 0.500231643921092 0.988081097602844 0.999536712157815 hm5C_site_29386 DeepMRMD:0.988081097602844;iRNA_m5C:0.999536712157815 29387 chr22 24573530 24573530 1 + G A LUSC 24573550 + 24573530 24573570 41 GACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCA AACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCA < 41bp 1 0.190470473175298 1 0.403825342655182 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573550 chr22:24573530 synonymous SNV . 0 1 hm5C_associated_SNPs_29111 0 0 1 0 1 Cytosol 1 0.500231643921141 1 0.999536712157718 hm5C_site_29387 DeepMRMD:1;iRNA_m5C:0.999536712157718 29388 chr1 24018318 24018318 1 + C T LUSC 24018298 + 24018278 24018318 41 GGCCGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGC GGCCGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGT < 41bp 1 0.3944531079849 1 0.444456368684769 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24018298 chr1:24018318 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_29112 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29388 DeepMRMD:1;iRNA_m5C:0.999536712157815 29389 chr1 24018318 24018318 1 + C T LUSC 24018301 + 24018281 24018321 41 CGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCGGT CGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGTGGT < 41bp 1 0.267185095842828 1 0.113029718399048 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24018301 chr1:24018318 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_29113 0 0 1 0 1 Cytosol 1 0.500231643937064 1 0.999536712125872 hm5C_site_29389 DeepMRMD:1;iRNA_m5C:0.999536712125872 29390 chr1 24018318 24018318 1 + C T LUSC 24018302 + 24018282 24018322 41 GGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCGGTG GGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGTGGTG < 41bp 1 0.425912165497793 1 0.0778849422931671 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24018302 chr1:24018318 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_29114 0 0 1 0 1 Cytosol 1 0.500231643921098 1 0.999536712157805 hm5C_site_29390 DeepMRMD:1;iRNA_m5C:0.999536712157805 29391 chr14 60592500 60592500 1 + G A LUSC 60592489 + 60592469 60592509 41 TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAT TGATGAAAAGTGGAAGGAAGCAATTTTACAAAAAAAGCCAT < 41bp 1 0.274576597703254 1 0.253730893135071 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60592489 chr14:60592500 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_29115 0 0 1 2 1 Endoplasmic reticulum 1 0.50023164392241 1 0.99953671215518 hm5C_site_29391 DeepMRMD:1;iRNA_m5C:0.99953671215518 29392 chr17 48433473 48433473 1 + A T LUSC 48433472 + 48433452 48433492 41 TTCCACACGGTGCTGGAGAACAGCCTGGCCTGTGAGACCCT TTCCACACGGTGCTGGAGAACTGCCTGGCCTGTGAGACCCT < 41bp 1 0.40297027067919 1 0.20985621213913 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48433472 chr17:48433473 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_29116 0 0 1 0 1 nucleolus 1 0.500231877497231 1 0.999536245005539 hm5C_site_29392 DeepMRMD:1;iRNA_m5C:0.999536245005539 29393 chr12 7177221 7177221 1 + G C LUSC 7177213 + 7177193 7177233 41 ACAGAGGATAATTGGAGGATCCGATGCAGATATTAAAAACT ACAGAGGATAATTGGAGGATCCGATGCACATATTAAAAACT < 41bp 1 0.0982238282739958 1 0.138712137937546 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C1S ENSG00000182326 CDS Human protein_coding chr12:7177213 chr12:7177221 nonsynonymous SNV 0.002 2 29 hm5C_associated_SNPs_29117 0 0 0 0 1 Nucleus 1 0.500231644106241 1 0.999536711787518 hm5C_site_29393 DeepMRMD:1;iRNA_m5C:0.999536711787518 29394 chr20 39978501 39978501 1 + C T LUSC 39978516 + 39978496 39978536 41 GAGTCCCACATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGT GAGTCTCACATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGT < 41bp 1 0.657644362104118 1 0.568420827388763 experiment 0.684711275791764 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39978516 chr20:39978501 synonymous SNV . 0 6 hm5C_associated_SNPs_29118 0 0 1 0 2 Nucleus 1 0.500231643921092 0.863158345222474 0.999536712157815 hm5C_site_29394 DeepMRMD:0.863158345222474;iRNA_m5C:0.999536712157815 29395 chr9 138378978 138378978 1 + A C LUSC 138378966 + 138378946 138378986 41 ACCGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCT ACCGCTCTTGGGACAGGGGGCCCAGCCAGGCCCGAGGTGCT < 41bp 1 0.0930575997661185 1 0.0980076193809509 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378966 chr9:138378978 synonymous SNV . 0 33 hm5C_associated_SNPs_29119 0 0 1 0 0 Ribosome 1 0.500231643922107 1 0.999536712155786 hm5C_site_29395 DeepMRMD:1;iRNA_m5C:0.999536712155786 29396 chr9 138378978 138378978 1 + A C LUSC 138378967 + 138378947 138378987 41 CCGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTG CCGCTCTTGGGACAGGGGGCCCAGCCAGGCCCGAGGTGCTG < 41bp 1 0.103625801220283 1 0.124520033597946 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378967 chr9:138378978 synonymous SNV . 0 32 hm5C_associated_SNPs_29120 0 0 1 0 0 Ribosome 1 0.500231644658394 1 0.999536710683211 hm5C_site_29396 DeepMRMD:1;iRNA_m5C:0.999536710683211 29397 chr9 138378978 138378978 1 + A C LUSC 138378968 + 138378948 138378988 41 CGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTGT CGCTCTTGGGACAGGGGGCCCAGCCAGGCCCGAGGTGCTGT < 41bp 1 0.320643875136554 1 0.291575849056244 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378968 chr9:138378978 synonymous SNV . 0 31 hm5C_associated_SNPs_29121 0 0 1 0 0 Ribosome 1 0.500231643921389 1 0.999536712157222 hm5C_site_29397 DeepMRMD:1;iRNA_m5C:0.999536712157222 29398 chr17 78346471 78346471 1 + G T LUSC 78346488 + 78346468 78346508 41 GTGGCCCGGATCCGCCTCTGCCTCGACAGAGCTGCAGATTT GTGTCCCGGATCCGCCTCTGCCTCGACAGAGCTGCAGATTT < 41bp 1 0.0384415800384173 1 0.134168326854706 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78346488 chr17:78346471 nonsynonymous SNV 0.061 4 4 hm5C_associated_SNPs_29122 0 0 1 0 0 Nucleus 1 0.500231471381074 1 0.999537057237852 hm5C_site_29398 DeepMRMD:1;iRNA_m5C:0.999537057237852 29399 chr5 7889289 7889289 1 + G T LUSC 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGTCAGCCGATTATAGCCGCTTTGTAC < 41bp 1 0.258033721534853 1 0.0744639337062836 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889289 nonsynonymous SNV 0.003 0 17 hm5C_associated_SNPs_29123 0 0 0 0 2 Nucleus 1 0.500231643921117 1 0.999536712157765 hm5C_site_29399 DeepMRMD:1;iRNA_m5C:0.999536712157765 29400 chr2 160031616 160031616 1 + G A LUSC 160031614 + 160031594 160031634 41 AGCCCCAACTACAGAGCATGCTGAGCCTCCGATCCTGTGTG AGCCCCAACTACAGAGCATGCTAAGCCTCCGATCCTGTGTG < 41bp 1 0.361863158955224 1 0.0805427134037018 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160031614 chr2:160031616 synonymous SNV . 0 23 hm5C_associated_SNPs_29124 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29400 DeepMRMD:1;iRNA_m5C:0.999536712157815 29401 chr19 35504575 35504575 1 + A G LUSC 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCGGCAGCGA < 41bp 1 0.0242661441727164 1 0.0674387216567993 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504575 nonsynonymous SNV 0.990 0 34 hm5C_associated_SNPs_29125 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164129927 1 0.99953671740146 hm5C_site_29401 DeepMRMD:1;iRNA_m5C:0.99953671740146 29402 chr19 35504576 35504576 1 + G T LUSC 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCATCAGCGA < 41bp 1 0.0217924319395752 1 0.0338573157787323 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504576 nonsynonymous SNV 0.994 2 35 hm5C_associated_SNPs_29127 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643782454 1 0.999536712435092 hm5C_site_29402 DeepMRMD:1;iRNA_m5C:0.999536712435092 29403 chr22 30416154 30416154 1 + G A LUSC 30416167 + 30416147 30416187 41 CCCTTTTGAGACCAGAGGACCAAACGTGGACAGTTCTACAG CCCTTTTAAGACCAGAGGACCAAACGTGGACAGTTCTACAG < 41bp 1 0.126539862024439 1 0.285062670707703 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30416167 chr22:30416154 nonsynonymous SNV 0.994 2 8 hm5C_associated_SNPs_29129 0 0 1 0 0 Ribosome 1 0.500231643920807 1 0.999536712158386 hm5C_site_29403 DeepMRMD:1;iRNA_m5C:0.999536712158386 29404 chr14 23311854 23311854 1 + G T LUSC 23311874 + 23311854 23311894 41 GGCCCCAACATTGGAGGAGACACCCACTTTGACTCTGCCGA TGCCCCAACATTGGAGGAGACACCCACTTTGACTCTGCCGA < 41bp 1 0.258158886360453 1 0.0645086467266083 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311874 chr14:23311854 nonsynonymous SNV 0.988 4 1 hm5C_associated_SNPs_29130 0 0 0 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29404 DeepMRMD:1;iRNA_m5C:0.999536712157815 29405 chr6 42603239 42603239 1 + A G LUSC 42603221 + 42603201 42603241 41 GAACCAGAGTGGGAAGCAGCCTTCACACTACAAATGAAATT GAACCAGAGTGGGAAGCAGCCTTCACACTACAAATGAAGTT < 41bp 1 0.35749475189811 1 0.217144817113876 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBR2 ENSG00000024048 CDS Human protein_coding chr6:42603221 chr6:42603239 synonymous SNV . 0 39 hm5C_associated_SNPs_29131 0 0 1 1 2 Cytosol 1 0.500232528095589 1 0.999534943808822 hm5C_site_29405 DeepMRMD:1;iRNA_m5C:0.999534943808822 29406 chr1 145584212 145584212 1 + T G LUSC 145584230 + 145584210 145584250 41 GCTCATCAGATGAGGAGGATCTGCCCCCTACCAAGAAGCAC GCGCATCAGATGAGGAGGATCTGCCCCCTACCAAGAAGCAC < 41bp 1 0.162613192327366 1 0.28046515583992 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIAS3 ENSG00000131788 CDS Human protein_coding chr1:145584230 chr1:145584212 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_29132 0 0 0 0 1 chromatin 1 0.500231643921888 1 0.999536712156224 hm5C_site_29406 DeepMRMD:1;iRNA_m5C:0.999536712156224 29407 chr3 52237941 52237941 1 + A C LUSC 52237938 + 52237918 52237958 41 TGAAAACCGATGGAGGGGATCCCAGTGGACTGCTGAAGAAC TGAAAACCGATGGAGGGGATCCCCGTGGACTGCTGAAGAAC < 41bp 1 0.46089156476652 1 0.182299077510834 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52237938 chr3:52237941 nonsynonymous SNV 0.212 1 24 hm5C_associated_SNPs_29133 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29407 DeepMRMD:1;iRNA_m5C:0.999536712157815 29408 chr22 26400696 26400696 1 + C T LUSC 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGGATAACGTCTCTATCCTCAGCTCCCAGCCAG < 41bp 1 0.0772982325181402 1 0.200634479522705 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400696 synonymous SNV . 0 22 hm5C_associated_SNPs_29134 0 0 0 0 1 chromatin 1 0.500231643921086 1 0.999536712157829 hm5C_site_29408 DeepMRMD:1;iRNA_m5C:0.999536712157829 29409 chr7 91714871 91714871 1 + T C LUSC 91714852 + 91714832 91714872 41 TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTACA < 41bp 1 0.231328489078503 1 0.0772009491920471 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714852 chr7:91714871 synonymous SNV . 0 40 hm5C_associated_SNPs_29135 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_29409 DeepMRMD:1;iRNA_m5C:0.999536712157816 29410 chr7 91714871 91714871 1 + T C LUSC 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTACAGTGA < 41bp 1 0.445138311454409 1 0.144807875156403 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714871 synonymous SNV . 0 36 hm5C_associated_SNPs_29136 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29410 DeepMRMD:1;iRNA_m5C:0.999536712157815 29411 chr7 91714871 91714871 1 + T C LUSC 91714864 + 91714844 91714884 41 GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG GGTGCTTTCTCTCACTGAGTCTCCCTACAGTGATGGAGAGG < 41bp 1 0.213748122495288 1 0.484151840209961 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714864 chr7:91714871 synonymous SNV . 0 28 hm5C_associated_SNPs_29137 0 0 0 0 1 Nucleus 1 0.50023164393132 1 0.999536712137359 hm5C_site_29411 DeepMRMD:1;iRNA_m5C:0.999536712137359 29412 chr7 91714871 91714871 1 + T C LUSC 91714867 + 91714847 91714887 41 GCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACC GCTTTCTCTCACTGAGTCTCCCTACAGTGATGGAGAGGACC < 41bp 1 0.0129181210486356 1 0.0990254878997803 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714867 chr7:91714871 synonymous SNV . 0 25 hm5C_associated_SNPs_29138 0 0 0 0 1 Nucleus 1 0.500231643983705 1 0.99953671203259 hm5C_site_29412 DeepMRMD:1;iRNA_m5C:0.99953671203259 29413 chr7 91714871 91714871 1 + T C LUSC 91714868 + 91714848 91714888 41 CTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACCA CTTTCTCTCACTGAGTCTCCCTACAGTGATGGAGAGGACCA < 41bp 1 0.425741724444403 1 0.448708951473236 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714868 chr7:91714871 synonymous SNV . 0 24 hm5C_associated_SNPs_29139 0 0 0 0 1 Nucleus 1 0.50023348294856 1 0.999533034102881 hm5C_site_29413 DeepMRMD:1;iRNA_m5C:0.999533034102881 29414 chr7 91714871 91714871 1 + T C LUSC 91714891 + 91714871 91714911 41 TAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAAC CAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAAC < 41bp 1 0.196788495071471 1 0.185504943132401 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714891 chr7:91714871 synonymous SNV . 0 1 hm5C_associated_SNPs_29140 0 0 0 0 1 Nucleus 1 0.500231698971797 1 0.999536602056406 hm5C_site_29414 DeepMRMD:1;iRNA_m5C:0.999536602056406 29415 chr5 82868261 82868261 1 + G T LUSC 82868273 + 82868253 82868293 41 CCCAACCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTG CCCAACCATCCAGACAGCTTCTTTTCTGCTGGAGAAGACTG < 41bp 1 0.0242641711489863 1 0.0202277600765228 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868273 chr5:82868261 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_29141 0 0 1 0 1 Ribosome 1 0.500231689321114 1 0.999536621357772 hm5C_site_29415 DeepMRMD:1;iRNA_m5C:0.999536621357772 29416 chr5 82868261 82868261 1 + G T LUSC 82868278 + 82868258 82868298 41 CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG CCATCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG < 41bp 1 0.518901377154861 1 0.500447809696198 experiment 0.962197245690277 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868278 chr5:82868261 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_29142 0 0 1 0 1 Ribosome 1 0.500231643921085 0.999104380607604 0.999536712157831 hm5C_site_29416 DeepMRMD:0.999104380607604;iRNA_m5C:0.999536712157831 29417 chr11 71939479 71939479 1 + G C LUSC 71939492 + 71939472 71939512 41 TGTGTGCGCCCTGCTTCTTCCTGTAGAGGGTGAGCGAGAGC TGTGTGCCCCCTGCTTCTTCCTGTAGAGGGTGAGCGAGAGC < 41bp 1 0.569635792332205 1 0.563292324542999 experiment 0.860728415335589 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71939492 chr11:71939479 nonsynonymous SNV 0.922 1 8 hm5C_associated_SNPs_29143 0 0 0 0 2 Cytosol 1 0.500231643923885 0.873415350914002 0.99953671215223 hm5C_site_29417 DeepMRMD:0.873415350914002;iRNA_m5C:0.99953671215223 29418 chrX 100668167 100668167 1 + G A LUSC 100668159 + 100668139 100668179 41 GTGGTGGCGCTTATGGTAGCCAAATGATGGGAGGGATGGGC GTGGTGGCGCTTATGGTAGCCAAATGATAGGAGGGATGGGC < 41bp 1 0.531309159583025 1 0.849174618721008 experiment 0.937381680833949 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HNRNPH2 ENSG00000126945 CDS Human protein_coding chrX:100668159 chrX:100668167 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_29144 0 0 1 0 0 Cytosol 1 0.500231643921083 0.301650762557984 0.999536712157834 hm5C_site_29418 DeepMRMD:0.301650762557984;iRNA_m5C:0.999536712157834 29419 chr2 32656044 32656044 1 + G T LUSC 32656029 + 32656009 32656049 41 TTTGACTCCAAGGTTTTCAGCGACTGTTCCTCCATGCTGGG TTTGACTCCAAGGTTTTCAGCGACTGTTCCTCCATTCTGGG < 41bp 1 0.137335474818267 1 0.0557495057582855 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656029 chr2:32656044 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_29145 0 0 1 0 0 Nucleus 1 0.500231643926785 1 0.999536712146429 hm5C_site_29419 DeepMRMD:1;iRNA_m5C:0.999536712146429 29420 chr7 142458433 142458433 1 + A G LUSC 142458413 + 142458393 142458433 41 ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAA ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAG < 41bp 1 0.0593556836023751 1 0.155443102121353 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458413 chr7:142458433 nonsynonymous SNV 0.858 2 41 hm5C_associated_SNPs_29146 1 0 0 0 1 Cytosol 1 0.500231609082529 1 0.999536781834941 hm5C_site_29420 DeepMRMD:1;iRNA_m5C:0.999536781834941 Hereditary pancreatitis Hereditary pancreatitis 29421 chr7 142458433 142458433 1 + A G LUSC 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAGG < 41bp 1 0.02522593772753 1 0.194945633411407 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458433 nonsynonymous SNV 0.858 2 40 hm5C_associated_SNPs_29147 1 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29421 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 29422 chr7 142458433 142458433 1 + A G LUSC 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAGGA < 41bp 1 0.00356102271771062 1 0.131398469209671 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458433 nonsynonymous SNV 0.858 2 39 hm5C_associated_SNPs_29148 1 0 0 0 1 Cytosol 1 0.500231493139325 1 0.99953701372135 hm5C_site_29422 DeepMRMD:1;iRNA_m5C:0.99953701372135 Hereditary pancreatitis Hereditary pancreatitis 29423 chr7 142458433 142458433 1 + A G LUSC 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAGGAT < 41bp 1 0.0477024977736165 1 0.131785124540329 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458433 nonsynonymous SNV 0.858 2 38 hm5C_associated_SNPs_29149 1 0 0 0 1 Cytosol 1 0.50023164392108 1 0.999536712157841 hm5C_site_29423 DeepMRMD:1;iRNA_m5C:0.999536712157841 Hereditary pancreatitis Hereditary pancreatitis 29424 chr7 142458433 142458433 1 + A G LUSC 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAGGATCGTTGGGGGCTACAACTGTGA < 41bp 1 0.185130566021121 1 0.113636314868927 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458433 nonsynonymous SNV 0.858 2 17 hm5C_associated_SNPs_29150 1 0 0 0 1 Cytosol 1 0.500231631513793 1 0.999536736972415 hm5C_site_29424 DeepMRMD:1;iRNA_m5C:0.999536736972415 Hereditary pancreatitis Hereditary pancreatitis 29425 chr7 142458433 142458433 1 + A G LUSC 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAGGATCGTTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.381859490992566 1 0.540628492832184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458433 nonsynonymous SNV 0.858 2 8 hm5C_associated_SNPs_29151 1 0 0 0 1 Cytosol 1 0.500231644110857 0.918743014335632 0.999536711778287 hm5C_site_29425 DeepMRMD:0.918743014335632;iRNA_m5C:0.999536711778287 Hereditary pancreatitis Hereditary pancreatitis 29426 chr7 142458433 142458433 1 + A G LUSC 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAGGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.187938651235839 1 0.220158666372299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458433 nonsynonymous SNV 0.858 2 5 hm5C_associated_SNPs_29152 1 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29426 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 29427 chr7 142458433 142458433 1 + A G LUSC 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AGGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.462922598784712 1 0.317121744155884 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458433 nonsynonymous SNV 0.858 2 2 hm5C_associated_SNPs_29153 1 0 0 0 1 Cytosol 1 0.500231657526231 1 0.999536684947538 hm5C_site_29427 DeepMRMD:1;iRNA_m5C:0.999536684947538 Hereditary pancreatitis Hereditary pancreatitis 29428 chr2 32656045 32656045 1 + C T LUSC 32656029 + 32656009 32656049 41 TTTGACTCCAAGGTTTTCAGCGACTGTTCCTCCATGCTGGG TTTGACTCCAAGGTTTTCAGCGACTGTTCCTCCATGTTGGG < 41bp 1 0.129248460231473 1 0.0401951670646667 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656029 chr2:32656045 synonymous SNV . 0 37 hm5C_associated_SNPs_29154 0 0 1 0 0 Nucleus 1 0.500231643980523 1 0.999536712038954 hm5C_site_29428 DeepMRMD:1;iRNA_m5C:0.999536712038954 29429 chr2 27459290 27459290 1 + C T LUSC 27459284 + 27459264 27459304 41 CAATGCGTGGAGCTGGGGGCCGGCGTCTCTCTTCCTTTGTC CAATGCGTGGAGCTGGGGGCCGGCGTTTCTCTTCCTTTGTC < 41bp 1 0.565007504242533 1 0.706601798534393 experiment 0.869984991514933 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27459284 chr2:27459290 nonsynonymous SNV 0.988 3 27 hm5C_associated_SNPs_29155 0 0 1 0 0 Exosome 1 0.500231643921092 0.586796402931214 0.999536712157815 hm5C_site_29429 DeepMRMD:0.586796402931214;iRNA_m5C:0.999536712157815 29430 chr5 90083976 90083976 1 + A G LUSC 90083965 + 90083945 90083985 41 GACATTGCAGACCCAGTGAGCGGGTTGTTCTATTTTGGAGA GACATTGCAGACCCAGTGAGCGGGTTGTTCTGTTTTGGAGA < 41bp 1 0.174480048355509 1 0.810165166854858 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ADGRV1 ENSG00000164199 CDS Human protein_coding chr5:90083965 chr5:90083976 nonsynonymous SNV 0.270 1 32 hm5C_associated_SNPs_29156 0 0 1 0 1 Nucleus 1 0.500231597826229 0.379669666290284 0.999536804347542 hm5C_site_29430 DeepMRMD:0.379669666290284;iRNA_m5C:0.999536804347542 29431 chr18 74625759 74625759 1 + G C LUSC 74625764 + 74625744 74625784 41 TGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTAC TGAAGCAGCATGTGCCGTCGCACACCGGGGAAAAGCCCTAC < 41bp 1 0.300731321521018 1 0.0919318795204163 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74625764 chr18:74625759 nonsynonymous SNV 0.865 4 16 hm5C_associated_SNPs_29157 0 0 0 0 2 Cytosol 1 0.50023164507462 1 0.999536709850761 hm5C_site_29431 DeepMRMD:1;iRNA_m5C:0.999536709850761 29432 chr17 74261643 74261643 1 + G A LUSC 74261645 + 74261625 74261665 41 GATCAACCAGTTCGTGCTGGCCGCGGGCTGCGCGGCCGACC GATCAACCAGTTCGTGCTAGCCGCGGGCTGCGCGGCCGACC < 41bp 1 0.695456714899242 1 0.242910772562027 experiment 0.609086570201517 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261645 chr17:74261643 synonymous SNV . 0 19 hm5C_associated_SNPs_29158 0 0 1 0 1 Cytosol 1 0.500231646820953 1 0.999536706358093 hm5C_site_29432 DeepMRMD:1;iRNA_m5C:0.999536706358093 29433 chr17 74261643 74261643 1 + G A LUSC 74261648 + 74261628 74261668 41 CAACCAGTTCGTGCTGGCCGCGGGCTGCGCGGCCGACCAGG CAACCAGTTCGTGCTAGCCGCGGGCTGCGCGGCCGACCAGG < 41bp 1 0.692419166348094 1 0.857524335384369 experiment 0.615161667303812 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261648 chr17:74261643 synonymous SNV . 0 16 hm5C_associated_SNPs_29159 0 0 1 0 1 Cytosol 1 0.50024515668336 0.284951329231262 0.99950968663328 hm5C_site_29433 DeepMRMD:0.284951329231262;iRNA_m5C:0.99950968663328 29434 chr17 74261643 74261643 1 + G A LUSC 74261657 + 74261637 74261677 41 CGTGCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGT CGTGCTAGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGT < 41bp 1 0.638773545062724 1 0.836922526359558 experiment 0.722452909874551 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261657 chr17:74261643 synonymous SNV . 0 7 hm5C_associated_SNPs_29160 0 0 1 0 1 Cytosol 1 0.500231643885121 0.326154947280884 0.999536712229759 hm5C_site_29434 DeepMRMD:0.326154947280884;iRNA_m5C:0.999536712229759 29435 chr17 74261643 74261643 1 + G A LUSC 74261660 + 74261640 74261680 41 GCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGTTGC GCTAGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGTTGC < 41bp 1 0.218693873898177 1 0.205718636512756 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261660 chr17:74261643 synonymous SNV . 0 4 hm5C_associated_SNPs_29161 0 0 1 0 1 Cytosol 1 0.500231634523665 1 0.999536730952669 hm5C_site_29435 DeepMRMD:1;iRNA_m5C:0.999536730952669 29436 chr17 74261643 74261643 1 + G A LUSC 74261661 + 74261641 74261681 41 CTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGTTGCT CTAGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGTTGCT < 41bp 1 0.287565882714413 1 0.0845721960067749 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261661 chr17:74261643 synonymous SNV . 0 3 hm5C_associated_SNPs_29162 0 0 1 0 1 Cytosol 1 0.500231640744574 1 0.999536718510852 hm5C_site_29436 DeepMRMD:1;iRNA_m5C:0.999536718510852 29437 chr13 88329309 88329309 1 + A T LUSC 88329294 + 88329274 88329314 41 CAGTGAGTGGAGTTTTGGACCAGCTGAAGTCACTCATCCAA CAGTGAGTGGAGTTTTGGACCAGCTGAAGTCACTCTTCCAA < 41bp 1 0.529680996201785 1 0.614556491374969 experiment 0.940638007596429 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88329294 chr13:88329309 nonsynonymous SNV 0.981 1 36 hm5C_associated_SNPs_29163 0 0 1 0 0 nucleus 1 0.500231643921317 0.770887017250062 0.999536712157367 hm5C_site_29437 DeepMRMD:0.770887017250062;iRNA_m5C:0.999536712157367 29438 chr7 5269298 5269298 1 + C G LUSC 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCGCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA < 41bp 1 0.145456494393877 1 0.0843649804592133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269298 nonsynonymous SNV 0.909 1 6 hm5C_associated_SNPs_29164 0 0 1 0 3 Cytosol 1 0.500198944384798 1 0.999602111230405 hm5C_site_29438 DeepMRMD:1;iRNA_m5C:0.999602111230405 29439 chr1 27106838 27106838 1 + C G LUSC 27106819 + 27106799 27106839 41 CCACACCCCCCTTCAGCCGCCTGGAGAAGTTGTATAGCACT CCACACCCCCCTTCAGCCGCCTGGAGAAGTTGTATAGCAGT < 41bp 1 0.425839403675215 1 0.55024653673172 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27106819 chr1:27106838 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_29165 0 0 1 0 0 Nucleus 1 0.500231643921092 0.89950692653656 0.999536712157815 hm5C_site_29439 DeepMRMD:0.89950692653656;iRNA_m5C:0.999536712157815 29440 chr15 29385282 29385282 1 + A G LUSC 29385286 + 29385266 29385306 41 GCCCTCCTTCAGTTCCAGGGCCCTGCGAACCAGAAGACCTC GCCCTCCTTCAGTTCCGGGGCCCTGCGAACCAGAAGACCTC < 41bp 1 0.0590076374984649 1 0.190315723419189 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APBA2 ENSG00000034053 CDS Human protein_coding chr15:29385286 chr15:29385282 synonymous SNV . 0 17 hm5C_associated_SNPs_29166 0 0 1 0 1 Cytosol 1 0.50023164392118 1 0.99953671215764 hm5C_site_29440 DeepMRMD:1;iRNA_m5C:0.99953671215764 29441 chr10 43882414 43882414 1 + T A LUSC 43882399 - 43882379 43882419 41 TTTACAACTTCTTCTCTCCTCTCAACCCTGTGAGAGTCCAT TTTACTACTTCTTCTCTCCTCTCAACCCTGTGAGAGTCCAT < 41bp 1 0.585667614640169 1 0.804824948310852 experiment 0.828664770719662 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPF ENSG00000169813 CDS Human protein_coding chr10:43882399 chr10:43882414 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_29167 0 0 1 0 0 Cytosol 1 0.500231643919907 0.390350103378296 0.999536712160186 hm5C_site_29441 DeepMRMD:0.390350103378296;iRNA_m5C:0.999536712160186 29442 chr12 105543472 105543472 1 + G T LUSC 105543489 + 105543469 105543509 41 CCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG CCATATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG < 41bp 1 0.138393259163242 1 0.0857822895050049 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105543489 chr12:105543472 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_29168 0 0 1 0 2 unknown 1 0.500231644059953 1 0.999536711880094 hm5C_site_29442 DeepMRMD:1;iRNA_m5C:0.999536711880094 29443 chr6 42854064 42854064 1 + G C LUSC 42854083 + 42854063 42854103 41 AGATCTCATGGTTCTTGTGCCCTTTCCACCTCTCAGTGGCC ACATCTCATGGTTCTTGTGCCCTTTCCACCTCTCAGTGGCC < 41bp 1 0.0151276070415883 1 0.0335967540740967 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42854083 chr6:42854064 nonsynonymous SNV 0.528 1 2 hm5C_associated_SNPs_29169 0 0 1 0 1 Ribosome 1 0.500230763077631 1 0.999538473844737 hm5C_site_29443 DeepMRMD:1;iRNA_m5C:0.999538473844737 29444 chr3 134851685 134851685 1 + G A LUSC 134851688 + 134851668 134851708 41 CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCC CATCTGCAAAAAGTGCCAGGCAGACCGCCGGAGCTGCTCCC < 41bp 1 0.155605167780165 1 0.670569658279419 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851688 chr3:134851685 nonsynonymous SNV 0.932 0 18 hm5C_associated_SNPs_29170 0 0 0 1 0 exosome 1 0.500231643921069 0.658860683441162 0.999536712157862 hm5C_site_29444 DeepMRMD:0.658860683441162;iRNA_m5C:0.999536712157862 29445 chr22 42042990 42042990 1 + C G LUSC 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTGTATCGG < 41bp 1 0.0904727715575012 1 0.412894308567047 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042990 synonymous SNV . 0 35 hm5C_associated_SNPs_29171 0 0 1 0 2 Cytosol 1 0.500231837949433 1 0.999536324101133 hm5C_site_29445 DeepMRMD:1;iRNA_m5C:0.999536324101133 29446 chr18 21098907 21098907 1 + G A LUSC 21098888 + 21098868 21098908 41 ATGTTCTCTTCTTGAGGCATCATTCTCGGACCTCCAACAGC ATGTTCTCTTCTTGAGGCATCATTCTCGGACCTCCAACAAC < 41bp 1 0.0689220197872921 1 0.0541291236877441 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21098888 chr18:21098907 nonsynonymous SNV 0.992 1 40 hm5C_associated_SNPs_29172 0 0 0 0 2 Ribosome 1 0.50023164392103 1 0.999536712157941 hm5C_site_29446 DeepMRMD:1;iRNA_m5C:0.999536712157941 29447 chr5 140084103 140084103 1 + G A LUSC 140084084 + 140084064 140084104 41 GTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAGA GTGAAGAAACGTTTTGAGGTCAACAAGAAGAAGATGGAAAA < 41bp 1 0.698677904817894 1 0.324794948101044 experiment 0.602644190364212 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084084 chr5:140084103 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_29173 0 0 1 0 2 Ribosome 1 0.500231557673468 1 0.999536884653064 hm5C_site_29447 DeepMRMD:1;iRNA_m5C:0.999536884653064 29448 chr19 14568938 14568938 1 + C T LUSC 14568926 + 14568906 14568946 41 GTGGCCCCAATGCCTGGGACCAGAGCTTCACTCTGGAGCTG GTGGCCCCAATGCCTGGGACCAGAGCTTCACTTTGGAGCTG < 41bp 1 0.500648896602042 1 0.412514567375183 experiment 0.998702206795916 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14568926 chr19:14568938 synonymous SNV . 0 33 hm5C_associated_SNPs_29176 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_29448 DeepMRMD:1;iRNA_m5C:0.999536712157816 29449 chr17 62223701 62223701 1 + G A LUSC 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCACTGTCTTTGAGCCCCCGCCGA < 41bp 1 0.326973049955118 1 0.0690600275993347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223701 . . 0 20 hm5C_associated_SNPs_29177 0 0 1 3 0 unknown 1 0.500231644877428 1 0.999536710245144 hm5C_site_29449 DeepMRMD:1;iRNA_m5C:0.999536710245144 29450 chr17 62223701 62223701 1 + G A LUSC 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCACTGTCTTTGAGCCCCCGCCGAGCTT < 41bp 1 0.273810323959022 1 0.0939969122409821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223701 . . 0 16 hm5C_associated_SNPs_29178 0 0 1 3 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_29450 DeepMRMD:1;iRNA_m5C:0.999536712157814 29451 chr17 62223701 62223701 1 + G A LUSC 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG < 41bp 1 0.124161338534744 1 0.0626926124095917 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223701 . . 0 9 hm5C_associated_SNPs_29179 0 0 1 3 0 unknown 1 0.500231643670939 1 0.999536712658121 hm5C_site_29451 DeepMRMD:1;iRNA_m5C:0.999536712658121 29452 chr17 62223701 62223701 1 + G A LUSC 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG < 41bp 1 0.288915565579218 1 0.057823657989502 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223701 . . 0 8 hm5C_associated_SNPs_29180 0 0 1 3 0 unknown 1 0.500231643709934 1 0.999536712580132 hm5C_site_29452 DeepMRMD:1;iRNA_m5C:0.999536712580132 29453 chr17 62223701 62223701 1 + G A LUSC 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC < 41bp 1 0.237998507647646 1 0.0720716416835785 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223701 . . 0 7 hm5C_associated_SNPs_29181 0 0 1 3 0 unknown 1 0.500231649202932 1 0.999536701594136 hm5C_site_29453 DeepMRMD:1;iRNA_m5C:0.999536701594136 29454 chr17 62223701 62223701 1 + G A LUSC 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG < 41bp 1 0.115603778392 1 0.0605391561985016 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223701 . . 0 6 hm5C_associated_SNPs_29182 0 0 1 3 0 unknown 1 0.500231643708633 1 0.999536712582734 hm5C_site_29454 DeepMRMD:1;iRNA_m5C:0.999536712582734 29455 chr17 62223701 62223701 1 + G A LUSC 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CACTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.56110430138081 1 0.504317760467529 experiment 0.877791397238381 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223701 . . 0 2 hm5C_associated_SNPs_29183 0 0 1 3 0 unknown 1 0.500231643921092 0.991364479064942 0.999536712157815 hm5C_site_29455 DeepMRMD:0.991364479064942;iRNA_m5C:0.999536712157815 29456 chr19 14562687 14562687 1 + C T LUSC 14562705 + 14562685 14562725 41 ACCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG ACTATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG < 41bp 1 0.154589273532983 1 0.0795038640499115 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562705 chr19:14562687 synonymous SNV . 0 3 hm5C_associated_SNPs_29184 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29456 DeepMRMD:1;iRNA_m5C:0.999536712157815 29457 chr19 14562687 14562687 1 + C T LUSC 14562706 + 14562686 14562726 41 CCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG CTATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG < 41bp 1 0.049806590642684 1 0.171513915061951 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562706 chr19:14562687 synonymous SNV . 0 2 hm5C_associated_SNPs_29185 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29457 DeepMRMD:1;iRNA_m5C:0.999536712157815 29458 chr11 71945345 71945345 1 + C G LUSC 71945331 + 71945311 71945351 41 CCCTTTCTCCTCAGGGCTCTCAAAGACTTCAGACCAGGCCT CCCTTTCTCCTCAGGGCTCTCAAAGACTTCAGACGAGGCCT < 41bp 1 0.316164994105713 1 0.804403066635132 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71945331 chr11:71945345 nonsynonymous SNV 0.992 2 35 hm5C_associated_SNPs_29186 0 0 1 0 1 Cytosol 1 0.500231643921092 0.391193866729736 0.999536712157815 hm5C_site_29458 DeepMRMD:0.391193866729736;iRNA_m5C:0.999536712157815 29459 chr22 37425498 37425498 1 + G C LUSC 37425514 + 37425494 37425534 41 AGTGGTACATGCGCGCCCGGCCCGAGGATGTCATCTCAGAG AGTGCTACATGCGCGCCCGGCCCGAGGATGTCATCTCAGAG < 41bp 1 0.593084409743075 1 0.542161881923676 experiment 0.813831180513851 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control MPST ENSG00000128309 CDS Human protein_coding chr22:37425514 chr22:37425498 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_29187 0 0 1 0 0 chromatin 1 0.50023545154261 0.915676236152648 0.999529096914781 hm5C_site_29459 DeepMRMD:0.915676236152648;iRNA_m5C:0.999529096914781 29460 chr22 37425498 37425498 1 + G C LUSC 37425515 + 37425495 37425535 41 GTGGTACATGCGCGCCCGGCCCGAGGATGTCATCTCAGAGG GTGCTACATGCGCGCCCGGCCCGAGGATGTCATCTCAGAGG < 41bp 1 0.428520360555972 1 0.599277973175049 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MPST ENSG00000128309 CDS Human protein_coding chr22:37425515 chr22:37425498 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_29188 0 0 1 0 0 chromatin 1 0.500231643491956 0.801444053649902 0.999536713016087 hm5C_site_29460 DeepMRMD:0.801444053649902;iRNA_m5C:0.999536713016087 29461 chr6 44107280 44107280 1 + C T LUSC 44107298 + 44107278 44107318 41 TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG TGTTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG < 41bp 1 0.379014904671203 1 0.179352074861526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107298 chr6:44107280 synonymous SNV . 0 3 hm5C_associated_SNPs_29189 0 0 1 0 2 Ribosome 1 0.500232287455367 1 0.999535425089266 hm5C_site_29461 DeepMRMD:1;iRNA_m5C:0.999535425089266 29462 chr11 61404858 61404858 1 + C T LUSC 61404877 + 61404857 61404897 41 TCAGTGCCCCATTCTATCATCGACGGGTACAAACGAGTCCT TTAGTGCCCCATTCTATCATCGACGGGTACAAACGAGTCCT < 41bp 1 0.647264955687684 1 0.387644231319427 experiment 0.705470088624631 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404877 chr11:61404858 . . 0 2 hm5C_associated_SNPs_29190 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29462 DeepMRMD:1;iRNA_m5C:0.999536712157815 29463 chr18 48446850 48446850 1 + G T LUSC 48446838 + 48446818 48446858 41 GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGAAGA GTTTTTAGATATGGCCGGAACACACTCATTCATTTCGAAGA < 41bp 1 0.278771238730626 1 0.137660920619965 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ME2 ENSG00000082212 CDS Human protein_coding chr18:48446838 chr18:48446850 nonsynonymous SNV 0.997 4 33 hm5C_associated_SNPs_29192 0 0 1 0 2 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_29463 DeepMRMD:1;iRNA_m5C:0.999536712157818 29464 chr6 29911978 29911978 1 + C A LUSC 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTAACC < 41bp 1 0.656069343625878 1 0.384299159049988 experiment 0.687861312748245 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911978 stopgain 0.077 0 39 hm5C_associated_SNPs_29193 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920953 1 0.999536712158095 hm5C_site_29464 DeepMRMD:1;iRNA_m5C:0.999536712158095 29465 chr1 12027050 12027050 1 + C G LUSC 12027067 + 12027047 12027087 41 TGCCCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC TGCGCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC < 41bp 1 0.483097601163831 1 0.140776306390762 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027067 chr1:12027050 nonsynonymous SNV 0.921 5 4 hm5C_associated_SNPs_29194 0 0 1 0 2 Nucleus 1 0.500231643921059 1 0.999536712157882 hm5C_site_29465 DeepMRMD:1;iRNA_m5C:0.999536712157882 29466 chr12 53671296 53671296 1 + G T LUSC 53671316 + 53671296 53671336 41 GAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT TAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT < 41bp 1 0.0596419120941883 1 0.0492598116397858 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671316 chr12:53671296 stopgain 1.000 0 1 hm5C_associated_SNPs_29195 0 0 1 0 1 Nucleus 1 0.500231643966429 1 0.999536712067142 hm5C_site_29466 DeepMRMD:1;iRNA_m5C:0.999536712067142 29467 chr15 75644693 75644693 1 + C T LUSC 75644692 + 75644672 75644712 41 ATCCCCCCCTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT ATCCCCCCCTTTGAGAAGGCCTGCTCGGTCCTGGAGGCCCT < 41bp 1 0.330703421328679 1 0.058122307062149 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75644692 chr15:75644693 nonsynonymous SNV 0.472 4 22 hm5C_associated_SNPs_29197 0 0 1 0 2 chromatin 1 0.500231643942536 1 0.999536712114929 hm5C_site_29467 DeepMRMD:1;iRNA_m5C:0.999536712114929 29468 chr15 41862286 41862286 1 + G A LUSC 41862285 + 41862265 41862305 41 TGTGGTCCTTGGTGTGCTAACGGCCCTGGTGACGGCTGCTG TGTGGTCCTTGGTGTGCTAACAGCCCTGGTGACGGCTGCTG < 41bp 1 0.66552266373729 1 0.241768836975098 experiment 0.668954672525421 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41862285 chr15:41862286 synonymous SNV . 0 22 hm5C_associated_SNPs_29198 0 0 1 0 2 Ribosome 1 0.500231643911509 1 0.999536712176982 hm5C_site_29468 DeepMRMD:1;iRNA_m5C:0.999536712176982 29469 chr1 40954798 40954798 1 + C G LUSC 40954785 + 40954765 40954805 41 GTTGACTTTCAAGGACATATCTATTGACTTCACCCAGGAAG GTTGACTTTCAAGGACATATCTATTGACTTCACGCAGGAAG < 41bp 1 0.411711839651884 1 0.100783675909042 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40954785 chr1:40954798 synonymous SNV . 0 34 hm5C_associated_SNPs_29199 0 0 1 0 2 insoluble cytoplasm 1 0.500231348562319 1 0.999537302875363 hm5C_site_29469 DeepMRMD:1;iRNA_m5C:0.999537302875363 29470 chr12 31255394 31255394 1 + G T LUSC 31255405 + 31255385 31255425 41 GTGACAGGGGCCCTGCTCCTCTCTGTGGTTGGAGGAAAGAT GTGACAGGGTCCCTGCTCCTCTCTGTGGTTGGAGGAAAGAT < 41bp 1 0.465808864531225 1 0.478331804275513 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31255405 chr12:31255394 nonsynonymous SNV 0.814 4 10 hm5C_associated_SNPs_29200 0 0 1 0 1 Cytosol 1 0.500231821994494 1 0.999536356011012 hm5C_site_29470 DeepMRMD:1;iRNA_m5C:0.999536356011012 29471 chr21 48068521 48068521 1 + G T LUSC 48068501 + 48068481 48068521 41 GGGACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCG GGGACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCT < 41bp 1 0.449608803643748 1 0.144956648349762 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068501 chr21:48068521 nonsynonymous SNV 0.002 1 41 hm5C_associated_SNPs_29201 0 0 1 0 1 Cytosol 1 0.500231741272025 1 0.99953651745595 hm5C_site_29471 DeepMRMD:1;iRNA_m5C:0.99953651745595 29472 chr5 6652021 6652021 1 + G A LUSC 6652008 + 6651988 6652028 41 AAAGCCTATGCCACTGTTGGCGTGTACAATGGCGATTATGT AAAGCCTATGCCACTGTTGGCGTGTACAATGGCAATTATGT < 41bp 1 0.122938938692357 1 0.250874012708664 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6652008 chr5:6652021 synonymous SNV . 0 34 hm5C_associated_SNPs_29203 0 0 1 0 1 Ribosome 1 0.500231644500748 1 0.999536710998504 hm5C_site_29472 DeepMRMD:1;iRNA_m5C:0.999536710998504 29473 chr14 23777252 23777252 1 + C T LUSC 23777246 + 23777226 23777266 41 GATGAACTTTTTCAAGGGGGCCCCAACTGGGGCCGCCTTGT GATGAACTTTTTCAAGGGGGCCCCAATTGGGGCCGCCTTGT < 41bp 1 0.446752668593179 1 0.119554072618484 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL2L2;BCL2L2-PABPN1 ENSG00000129473;ENSG00000258643 CDS Human other chr14:23777246 chr14:23777252 synonymous SNV . 0 27 hm5C_associated_SNPs_29204 0 0 1 0 0 unknown 1 0.500231643910202 1 0.999536712179595 hm5C_site_29473 DeepMRMD:1;iRNA_m5C:0.999536712179595 29474 chr14 23777252 23777252 1 + C T LUSC 23777247 + 23777227 23777267 41 ATGAACTTTTTCAAGGGGGCCCCAACTGGGGCCGCCTTGTA ATGAACTTTTTCAAGGGGGCCCCAATTGGGGCCGCCTTGTA < 41bp 1 0.376571674305722 1 0.212133049964905 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL2L2;BCL2L2-PABPN1 ENSG00000129473;ENSG00000258643 CDS Human other chr14:23777247 chr14:23777252 synonymous SNV . 0 26 hm5C_associated_SNPs_29205 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29474 DeepMRMD:1;iRNA_m5C:0.999536712157815 29475 chr14 23777252 23777252 1 + C T LUSC 23777248 + 23777228 23777268 41 TGAACTTTTTCAAGGGGGCCCCAACTGGGGCCGCCTTGTAG TGAACTTTTTCAAGGGGGCCCCAATTGGGGCCGCCTTGTAG < 41bp 1 0.0928997111517722 1 0.164260387420654 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL2L2;BCL2L2-PABPN1 ENSG00000129473;ENSG00000258643 CDS Human other chr14:23777248 chr14:23777252 synonymous SNV . 0 25 hm5C_associated_SNPs_29206 0 0 1 0 0 unknown 1 0.500231643921089 1 0.999536712157822 hm5C_site_29475 DeepMRMD:1;iRNA_m5C:0.999536712157822 29476 chr14 23777252 23777252 1 + C T LUSC 23777249 + 23777229 23777269 41 GAACTTTTTCAAGGGGGCCCCAACTGGGGCCGCCTTGTAGC GAACTTTTTCAAGGGGGCCCCAATTGGGGCCGCCTTGTAGC < 41bp 1 0.231310773786372 1 0.1883644759655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL2L2;BCL2L2-PABPN1 ENSG00000129473;ENSG00000258643 CDS Human other chr14:23777249 chr14:23777252 synonymous SNV . 0 24 hm5C_associated_SNPs_29207 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29476 DeepMRMD:1;iRNA_m5C:0.999536712157815 29477 chr14 23777252 23777252 1 + C T LUSC 23777258 + 23777238 23777278 41 CAAGGGGGCCCCAACTGGGGCCGCCTTGTAGCCTTCTTTGT CAAGGGGGCCCCAATTGGGGCCGCCTTGTAGCCTTCTTTGT < 41bp 1 0.116135487332898 1 0.0438671708106995 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL2L2;BCL2L2-PABPN1 ENSG00000129473;ENSG00000258643 CDS Human other chr14:23777258 chr14:23777252 synonymous SNV . 0 15 hm5C_associated_SNPs_29208 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29477 DeepMRMD:1;iRNA_m5C:0.999536712157815 29478 chr4 79301038 79301038 1 + C A LUSC 79301019 + 79300999 79301039 41 CTCCTATTTCATGTTGTGAGCACTCCCACCAATGGTCAGCT CTCCTATTTCATGTTGTGAGCACTCCCACCAATGGTCAGAT < 41bp 1 0.0252037853214637 1 0.0721252262592316 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79301019 chr4:79301038 nonsynonymous SNV 0.991 5 40 hm5C_associated_SNPs_29209 0 0 1 0 0 Nucleus 1 0.500231644308893 1 0.999536711382214 hm5C_site_29478 DeepMRMD:1;iRNA_m5C:0.999536711382214 29479 chr17 37357551 37357551 1 + G A LUSC 37357571 + 37357551 37357591 41 GAAATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGT AAAATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGT < 41bp 1 0.132287121738123 1 0.0717098712921143 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37357571 chr17:37357551 nonsynonymous SNV 0.997 2 1 hm5C_associated_SNPs_29210 0 0 1 0 2 chromatin 1 0.50023178185598 1 0.99953643628804 hm5C_site_29479 DeepMRMD:1;iRNA_m5C:0.99953643628804 29480 chr5 140764662 140764662 1 + G T LUSC 140764677 + 140764657 140764697 41 GGCTTGGCGAACGTGCCCACCTCGCACTTTGTGGGCATGGA GGCTTTGCGAACGTGCCCACCTCGCACTTTGTGGGCATGGA < 41bp 1 0.17813971064591 1 0.11482298374176 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCDHGA7 ENSG00000253537 CDS Human protein_coding chr5:140764677 chr5:140764662 nonsynonymous SNV 0.003 0 6 hm5C_associated_SNPs_29211 0 0 0 0 0 exosome 1 0.500231643939545 1 0.99953671212091 hm5C_site_29480 DeepMRMD:1;iRNA_m5C:0.99953671212091 29481 chr4 8294078 8294078 1 + C A LUSC 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTACGGGAACTCCGGGGGACCACTGGTGAACATGGTAAGTG < 41bp 1 0.389846454379258 1 0.389927953481674 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294078 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_29212 0 0 0 0 2 exosome 1 0.500231543332359 1 0.999536913335281 hm5C_site_29481 DeepMRMD:1;iRNA_m5C:0.999536913335281 29482 chr15 89849348 89849348 1 + C T LUSC 89849336 + 89849316 89849356 41 CATTTTTCCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC CATTTTTCCACGAGCTGGTGCAGACAGCTCTGTCATCAGGC < 41bp 1 0.11748991513463 1 0.330495297908783 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89849336 chr15:89849348 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_29213 0 0 1 0 1 Nucleus 1 0.50023171621513 1 0.999536567569739 hm5C_site_29482 DeepMRMD:1;iRNA_m5C:0.999536567569739 29483 chr12 123892086 123892086 1 + C G LUSC 123892103 + 123892083 123892123 41 AATCACAGCAAATGTGGGAACTGCCAAACCAAACTGCACGA AATGACAGCAAATGTGGGAACTGCCAAACCAAACTGCACGA < 41bp 1 0.456919295173308 1 0.414315581321716 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123892103 chr12:123892086 nonsynonymous SNV 0.997 5 4 hm5C_associated_SNPs_29214 0 0 1 0 0 Cytosol 1 0.500231852993452 1 0.999536294013096 hm5C_site_29483 DeepMRMD:1;iRNA_m5C:0.999536294013096 29484 chr3 100059954 100059954 1 + C T LUSC 100059974 + 100059954 100059994 41 CACCTGTGCTGTGTTTGGGCCTGATGGAACTTTACTAGCAA TACCTGTGCTGTGTTTGGGCCTGATGGAACTTTACTAGCAA < 41bp 1 0.39551999143235 1 0.141973227262497 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NIT2 ENSG00000114021 CDS Human protein_coding chr3:100059974 chr3:100059954 synonymous SNV . 0 1 hm5C_associated_SNPs_29215 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_29484 DeepMRMD:1;iRNA_m5C:0.999536712157816 29485 chr14 64484359 64484359 1 + T C LUSC 64484376 + 64484356 64484396 41 CTCTAGCTTTGTGGGACAAACTTTTTAACTTAAAAAATGTC CTCCAGCTTTGTGGGACAAACTTTTTAACTTAAAAAATGTC < 41bp 1 0.0445768600814954 1 0.105151683092117 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64484376 chr14:64484359 nonsynonymous SNV 0.994 3 4 hm5C_associated_SNPs_29216 0 0 1 0 1 Nucleus 1 0.500231643921086 1 0.999536712157827 hm5C_site_29485 DeepMRMD:1;iRNA_m5C:0.999536712157827 29486 chr19 14024308 14024308 1 + C T LUSC 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGTGT < 41bp 1 0.238800559790535 1 0.30458390712738 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024308 nonsynonymous SNV 0.002 0 39 hm5C_associated_SNPs_29217 0 0 0 0 1 chromatin 1 0.50023164389878 1 0.999536712202439 hm5C_site_29486 DeepMRMD:1;iRNA_m5C:0.999536712202439 29487 chr1 29069421 29069421 1 + C T LUSC 29069427 + 29069407 29069447 41 TCTGCTGTTGGTAGCGGGTCCATTACTAGTAACATCGTGGC TCTGCTGTTGGTAGTGGGTCCATTACTAGTAACATCGTGGC < 41bp 1 0.283090093469055 1 0.157625079154968 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069427 chr1:29069421 synonymous SNV . 0 15 hm5C_associated_SNPs_29218 0 0 1 0 0 Cytosol 1 0.500231643921443 1 0.999536712157114 hm5C_site_29487 DeepMRMD:1;iRNA_m5C:0.999536712157114 29488 chr6 30877261 30877261 1 + G C LUSC 30877252 + 30877232 30877272 41 AGAACTGGGTGATGCGGATGCTCTTTCTGGAGCAGCCTTTG AGAACTGGGTGATGCGGATGCTCTTTCTGCAGCAGCCTTTG < 41bp 1 0.374281951087328 1 0.04526686668396 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30877252 chr6:30877261 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_29219 0 0 0 0 2 chromatin 1 0.500231643926618 1 0.999536712146763 hm5C_site_29488 DeepMRMD:1;iRNA_m5C:0.999536712146763 29489 chr12 7080158 7080158 1 + T G LUSC 7080174 + 7080154 7080194 41 ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAAC ATGCGCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAAC < 41bp 1 0.232338758676347 1 0.0521124303340912 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080174 chr12:7080158 synonymous SNV . 0 5 hm5C_associated_SNPs_29220 0 0 1 1 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_29489 DeepMRMD:1;iRNA_m5C:0.999536712157814 29490 chr12 7080158 7080158 1 + T G LUSC 7080176 + 7080156 7080196 41 GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA GCGCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA < 41bp 1 0.158601003785642 1 0.0466203689575195 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080176 chr12:7080158 synonymous SNV . 0 3 hm5C_associated_SNPs_29221 0 0 1 1 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_29490 DeepMRMD:1;iRNA_m5C:0.999536712157815 29491 chr12 7080158 7080158 1 + T G LUSC 7080177 + 7080157 7080197 41 CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG CGCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG < 41bp 1 0.378850675470651 1 0.102057635784149 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080177 chr12:7080158 synonymous SNV . 0 2 hm5C_associated_SNPs_29222 0 0 1 1 1 Cytosol 1 0.500231643921075 1 0.99953671215785 hm5C_site_29491 DeepMRMD:1;iRNA_m5C:0.99953671215785 29492 chr17 48148801 48148801 1 + G A LUSC 48148790 + 48148770 48148810 41 TTGCTGAGCCAGGAGGCAGGCGGAGACCTGCGGAGGAGGCA TTGCTGAGCCAGGAGGCAGGCGGAGACCTGCAGAGGAGGCA < 41bp 1 0.504890871821516 1 0.846988081932068 experiment 0.990218256356968 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48148790 chr17:48148801 nonsynonymous SNV 0.989 0 32 hm5C_associated_SNPs_29223 0 0 0 0 1 Cytosol 1 0.500231643921092 0.306023836135864 0.999536712157815 hm5C_site_29492 DeepMRMD:0.306023836135864;iRNA_m5C:0.999536712157815 29493 chr12 7080195 7080195 1 + A G LUSC 7080176 + 7080156 7080196 41 GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACGA < 41bp 1 0.171397788919208 1 0.056992381811142 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080176 chr12:7080195 nonsynonymous SNV 0.996 0 40 hm5C_associated_SNPs_29224 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_29493 DeepMRMD:1;iRNA_m5C:0.999536712157815 29494 chr12 7080195 7080195 1 + A G LUSC 7080177 + 7080157 7080197 41 CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACGAG < 41bp 1 0.403484394719327 1 0.128461629152298 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080177 chr12:7080195 nonsynonymous SNV 0.996 0 39 hm5C_associated_SNPs_29225 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_29494 DeepMRMD:1;iRNA_m5C:0.999536712157816 29495 chrX 41089015 41089015 1 + G T LUSC 41089020 + 41089000 41089040 41 CTTGCAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA CTTGCAAAAGCTTGTTAACTCTGTCCAGAGGAGGTAAAAAA < 41bp 1 0.0978664387973239 1 0.290596961975098 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089020 chrX:41089015 stopgain 1.000 1 16 hm5C_associated_SNPs_29227 0 0 1 0 2 Nucleus 1 0.500231643955234 1 0.999536712089531 hm5C_site_29495 DeepMRMD:1;iRNA_m5C:0.999536712089531 29496 chrX 41089015 41089015 1 + G T LUSC 41089025 + 41089005 41089045 41 AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGCCA AAAAGCTTGTTAACTCTGTCCAGAGGAGGTAAAAAAAGCCA < 41bp 1 0.19821071422794 1 0.771965086460114 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089025 chrX:41089015 stopgain 1.000 1 11 hm5C_associated_SNPs_29228 0 0 1 0 2 Nucleus 1 0.500231661972823 0.456069827079772 0.999536676054354 hm5C_site_29496 DeepMRMD:0.456069827079772;iRNA_m5C:0.999536676054354 29497 chr17 21319344 21319344 1 + G A LUSC 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGTGCGCGCACAGCTCATCAAGCCGCGGG < 41bp 1 0.588801173198434 1 0.136302173137665 experiment 0.822397653603133 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319344 synonymous SNV . 0 22 hm5C_associated_SNPs_29229 0 0 0 0 0 unknown 1 0.500231643922927 1 0.999536712154147 hm5C_site_29497 DeepMRMD:1;iRNA_m5C:0.999536712154147 29498 chr19 55997930 55997930 1 + C T LUSC 55997926 + 55997906 55997946 41 GCCGGTGTTCCTGGCTGTGGCCGCCGTGAAGCTGGGCCTGC GCCGGTGTTCCTGGCTGTGGCCGCTGTGAAGCTGGGCCTGC < 41bp 1 0.607852195707458 1 0.298079252243042 experiment 0.784295608585085 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT14 ENSG00000090971 CDS Human protein_coding chr19:55997926 chr19:55997930 synonymous SNV . 0 25 hm5C_associated_SNPs_29230 0 0 1 0 0 chromatin 1 0.500231643921076 1 0.999536712157847 hm5C_site_29498 DeepMRMD:1;iRNA_m5C:0.999536712157847 29499 chr19 55997930 55997930 1 + C T LUSC 55997929 + 55997909 55997949 41 GGTGTTCCTGGCTGTGGCCGCCGTGAAGCTGGGCCTGCGGG GGTGTTCCTGGCTGTGGCCGCTGTGAAGCTGGGCCTGCGGG < 41bp 1 0.542984998018704 1 0.510546863079071 experiment 0.914030003962591 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAT14 ENSG00000090971 CDS Human protein_coding chr19:55997929 chr19:55997930 synonymous SNV . 0 22 hm5C_associated_SNPs_29231 0 0 1 0 0 chromatin 1 0.500231643477977 0.978906273841858 0.999536713044046 hm5C_site_29499 DeepMRMD:0.978906273841858;iRNA_m5C:0.999536713044046 29500 chr7 116829385 116829385 1 + A G LUSC 116829387 + 116829367 116829407 41 TCCAACAGATATAAGCTTACCAAAGTCAGCAACAATATGCT TCCAACAGATATAAGCTTGCCAAAGTCAGCAACAATATGCT < 41bp 1 0.216324468636017 1 0.678213834762573 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ST7 ENSG00000004866 CDS Human protein_coding chr7:116829387 chr7:116829385 synonymous SNV . 0 19 hm5C_associated_SNPs_29233 0 0 1 1 2 Cytosol 1 0.500249208304291 0.643572330474854 0.999501583391418 hm5C_site_29500 DeepMRMD:0.643572330474854;iRNA_m5C:0.999501583391418 29501 chr17 73058246 73058246 1 + G A LUSC 73058257 + 73058237 73058277 41 ATAACTACGGCAATGAGGATCAGGCAGAATTCCTCTGTGTT ATAACTACGACAATGAGGATCAGGCAGAATTCCTCTGTGTT < 41bp 1 0.182924657579455 1 0.454549312591553 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058257 chr17:73058246 nonsynonymous SNV 0.999 4 10 hm5C_associated_SNPs_29234 0 0 1 0 2 Cytosol 1 0.500231782115157 1 0.999536435769685 hm5C_site_29501 DeepMRMD:1;iRNA_m5C:0.999536435769685 29502 chrX 18606133 18606133 1 + G T LUSC 18606141 + 18606121 18606161 41 TTGGGGAGCTTAGCGATGGACAGCCTTTATTTCCTGGAGAA TTGGGGAGCTTATCGATGGACAGCCTTTATTTCCTGGAGAA < 41bp 1 0.368425933925807 1 0.352780163288116 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18606141 chrX:18606133 nonsynonymous SNV 0.999 3 13 hm5C_associated_SNPs_29235 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_29502 DeepMRMD:1;iRNA_m5C:0.999536712157815 29503 chr15 81199023 81199023 1 + C T LUSC 81199009 + 81198989 81199029 41 CCCTTTCTGCCCTAGGGAAACCAATGTACCTGCACATCGGG CCCTTTCTGCCCTAGGGAAACCAATGTACCTGCATATCGGG < 41bp 1 0.097922767757556 1 0.061531662940979 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81199009 chr15:81199023 synonymous SNV . 0 35 hm5C_associated_SNPs_29236 0 0 0 0 1 Nucleus 1 0.500231643921172 1 0.999536712157656 hm5C_site_29503 DeepMRMD:1;iRNA_m5C:0.999536712157656 29504 chr11 66610673 66610673 1 + T C LUSC 66610663 + 66610643 66610683 41 GTGCTGTGGCTGCAGGAGGTCTCCAACCTGTCAGAGTGGCT GTGCTGTGGCTGCAGGAGGTCTCCAACCTGCCAGAGTGGCT < 41bp 1 0.690492879432926 1 0.911532461643219 experiment 0.619014241134147 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66610663 chr11:66610673 nonsynonymous SNV 0.986 3 31 hm5C_associated_SNPs_29237 0 0 1 0 1 Endoplasmic reticulum 1 0.500231054682551 0.176935076713562 0.999537890634897 hm5C_site_29504 DeepMRMD:0.176935076713562;iRNA_m5C:0.999537890634897 29505 chr1 205238755 205238755 1 + C T LUSC 205238737 + 205238717 205238757 41 GGCAGTGCCACACTCGTCTCCAGCCCCAAGTATGGCAGCGA GGCAGTGCCACACTCGTCTCCAGCCCCAAGTATGGCAGTGA < 41bp 1 0.208737814099925 1 0.308018982410431 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205238737 chr1:205238755 synonymous SNV . 0 39 hm5C_associated_SNPs_29238 0 0 0 0 0 chromatin 1 0.500231643921103 1 0.999536712157795 hm5C_site_29505 DeepMRMD:1;iRNA_m5C:0.999536712157795 29506 chr15 42052717 42052717 1 + T A LUSC 42052715 + 42052695 42052735 41 TCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGT TCCAAGGTTTCCAAAAGTCTCAATCTTACTCGAGTAAGTGT < 41bp 1 0.0457718085986026 1 0.0687389969825745 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42052715 chr15:42052717 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_29239 0 0 1 0 1 Cytosol 1 0.500231643814425 1 0.99953671237115 hm5C_site_29506 DeepMRMD:1;iRNA_m5C:0.99953671237115 29507 chr20 25187723 25187723 1 + C T LUSC 25187712 + 25187692 25187732 41 CTCTCCCCCCTTCCCACCAGCAGCCGCAGCACGGTCCTTGG CTCTCCCCCCTTCCCACCAGCAGCCGCAGCATGGTCCTTGG < 41bp 1 0.386289205818406 1 0.370169401168823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25187712 chr20:25187723 synonymous SNV . 0 32 hm5C_associated_SNPs_29240 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_29507 DeepMRMD:1;iRNA_m5C:0.999536712157815 29508 chr1 28159279 28159279 1 + C T LUSC 28159277 + 28159257 28159297 41 TATTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTG TATTTTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTG < 41bp 1 0.0850945927081933 1 0.470963329076767 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159277 chr1:28159279 synonymous SNV . 0 23 hm5C_associated_SNPs_29241 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29508 DeepMRMD:1;iRNA_m5C:0.999536712157815 29509 chr1 28159279 28159279 1 + C T LUSC 28159278 + 28159258 28159298 41 ATTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGG ATTTTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGG < 41bp 1 0.3893491503865 1 0.831571340560913 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159278 chr1:28159279 synonymous SNV . 0 22 hm5C_associated_SNPs_29242 0 0 1 0 2 Ribosome 1 0.500231643759789 0.336857318878174 0.999536712480423 hm5C_site_29509 DeepMRMD:0.336857318878174;iRNA_m5C:0.999536712480423 29510 chr1 28159279 28159279 1 + C T LUSC 28159280 + 28159260 28159300 41 TTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGAT TTTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGAT < 41bp 1 0.0814713011046863 1 0.0487513840198517 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159280 chr1:28159279 synonymous SNV . 0 20 hm5C_associated_SNPs_29243 0 0 1 0 2 Ribosome 1 0.500231643921551 1 0.999536712156898 hm5C_site_29510 DeepMRMD:1;iRNA_m5C:0.999536712156898 29511 chr1 28159279 28159279 1 + C T LUSC 28159281 + 28159261 28159301 41 TTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATG TTTCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGATG < 41bp 1 0.302490782505801 1 0.0551595389842987 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159281 chr1:28159279 synonymous SNV . 0 19 hm5C_associated_SNPs_29244 0 0 1 0 2 Ribosome 1 0.500231643901147 1 0.999536712197705 hm5C_site_29511 DeepMRMD:1;iRNA_m5C:0.999536712197705 29512 chr1 28159279 28159279 1 + C T LUSC 28159283 + 28159263 28159303 41 TCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTA TCAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGATGTA < 41bp 1 0.640271147572068 1 0.345185458660126 experiment 0.719457704855864 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159283 chr1:28159279 synonymous SNV . 0 17 hm5C_associated_SNPs_29245 0 0 1 0 2 Ribosome 1 0.500231643921968 1 0.999536712156065 hm5C_site_29512 DeepMRMD:1;iRNA_m5C:0.999536712156065 29513 chr1 28159279 28159279 1 + C T LUSC 28159284 + 28159264 28159304 41 CAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAG CAGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGATGTAG < 41bp 1 0.392359622875141 1 0.212592899799347 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159284 chr1:28159279 synonymous SNV . 0 16 hm5C_associated_SNPs_29246 0 0 1 0 2 Ribosome 1 0.500231643925669 1 0.999536712148661 hm5C_site_29513 DeepMRMD:1;iRNA_m5C:0.999536712148661 29514 chr1 28159279 28159279 1 + C T LUSC 28159285 + 28159265 28159305 41 AGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAGT AGGGCAGGTAAGCCTCCTCCCGGTTTACATCTGGATGTAGT < 41bp 1 0.285262067303991 1 0.426471889019012 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159285 chr1:28159279 synonymous SNV . 0 15 hm5C_associated_SNPs_29247 0 0 1 0 2 Ribosome 1 0.500231645317868 1 0.999536709364264 hm5C_site_29514 DeepMRMD:1;iRNA_m5C:0.999536709364264 29515 chr11 45948283 45948283 1 + C T LUSC 45948298 + 45948278 45948318 41 CACAACTGGACGAGGAAGACCCCTGCTTTGAGTTCCGGCAG CACAATTGGACGAGGAAGACCCCTGCTTTGAGTTCCGGCAG < 41bp 1 0.245125737029628 1 0.633621037006378 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45948298 chr11:45948283 synonymous SNV . 0 6 hm5C_associated_SNPs_29248 0 0 1 0 1 chromatin 1 0.500231643922628 0.732757925987244 0.999536712154743 hm5C_site_29515 DeepMRMD:0.732757925987244;iRNA_m5C:0.999536712154743 29516 chr3 58092592 58092592 1 + C T LUSC 58092593 + 58092573 58092613 41 AGCCACGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGC AGCCACGGGAGGCTACAACTCTGATCTGGTGAATCAGCTGC < 41bp 1 0.450106198651117 1 0.325373470783234 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092593 chr3:58092592 nonsynonymous SNV 0.998 1 20 hm5C_associated_SNPs_29249 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29516 DeepMRMD:1;iRNA_m5C:0.999536712157815 29517 chr3 58092592 58092592 1 + C T LUSC 58092598 + 58092578 58092618 41 CGGGAGGCTACAACCCTGATCTGGTGAATCAGCTGCTGTGC CGGGAGGCTACAACTCTGATCTGGTGAATCAGCTGCTGTGC < 41bp 1 0.509365081123178 1 0.152396887540817 experiment 0.981269837753645 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58092598 chr3:58092592 nonsynonymous SNV 0.998 1 15 hm5C_associated_SNPs_29250 0 0 1 0 1 Cytosol 1 0.500231609639627 1 0.999536780720747 hm5C_site_29517 DeepMRMD:1;iRNA_m5C:0.999536780720747 29518 chr22 24583361 24583361 1 + G A LUSC 24583360 + 24583340 24583380 41 GACGACTTCACCCTGCACAGCGGGCGCGTCCTGCCCCCAGG GACGACTTCACCCTGCACAGCAGGCGCGTCCTGCCCCCAGG < 41bp 1 0.571822660402049 1 0.613803803920746 experiment 0.856354679195903 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24583360 chr22:24583361 nonsynonymous SNV 0.010 4 22 hm5C_associated_SNPs_29251 0 0 0 0 1 Exosome 1 0.500231643921094 0.772392392158508 0.999536712157812 hm5C_site_29518 DeepMRMD:0.772392392158508;iRNA_m5C:0.999536712157812 29519 chr20 3781952 3781952 1 + C T LUSC 3781963 + 3781943 3781983 41 CCCCTGGCCCTAGGTCGCTTCTCTCTGACCCCTGCAGAGGG CCCCTGGCCTTAGGTCGCTTCTCTCTGACCCCTGCAGAGGG < 41bp 1 0.182124967692387 1 0.589261174201965 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781963 chr20:3781952 synonymous SNV . 0 10 hm5C_associated_SNPs_29252 0 0 1 0 1 Ribosome 1 0.500231643881854 0.82147765159607 0.999536712236292 hm5C_site_29519 DeepMRMD:0.82147765159607;iRNA_m5C:0.999536712236292 29520 chr17 34958639 34958639 1 + G T LUSC 34958622 + 34958602 34958642 41 GGAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCG GGAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGTCCG < 41bp 1 0.444054460220143 1 0.344071537256241 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM1 ENSG00000129282 CDS Human other chr17:34958622 chr17:34958639 nonsynonymous SNV 0.005 0 38 hm5C_associated_SNPs_29253 0 0 0 0 0 nucleolus 1 0.500231613257353 1 0.999536773485294 hm5C_site_29520 DeepMRMD:1;iRNA_m5C:0.999536773485294 29521 chr17 34958639 34958639 1 + G T LUSC 34958623 + 34958603 34958643 41 GAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCGG GAGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGTCCGG < 41bp 1 0.34993605657657 1 0.313922435045242 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM1 ENSG00000129282 CDS Human other chr17:34958623 chr17:34958639 nonsynonymous SNV 0.005 0 37 hm5C_associated_SNPs_29254 0 0 0 0 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29521 DeepMRMD:1;iRNA_m5C:0.999536712157815 29522 chr17 34958639 34958639 1 + G T LUSC 34958624 + 34958604 34958644 41 AGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGGCCGGG AGGTGAGCCCGCTGCGGCCCCGGCCTTGGAGAGAGTCCGGG < 41bp 1 0.540921069057313 1 0.344630300998688 experiment 0.918157861885373 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM1 ENSG00000129282 CDS Human other chr17:34958624 chr17:34958639 nonsynonymous SNV 0.005 0 36 hm5C_associated_SNPs_29255 0 0 0 0 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29522 DeepMRMD:1;iRNA_m5C:0.999536712157815 29523 chr1 183091288 183091288 1 + C T LUSC 183091283 + 183091263 183091303 41 GGAGATTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTG GGAGATTCAACTGCAGGCACCTCCTTCGATTGCCAACCCTG < 41bp 1 0.154019909000203 1 0.107446640729904 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091283 chr1:183091288 nonsynonymous SNV 0.940 0 26 hm5C_associated_SNPs_29256 0 0 1 0 2 Ribosome 1 0.500231644515386 1 0.999536710969227 hm5C_site_29523 DeepMRMD:1;iRNA_m5C:0.999536710969227 29524 chr16 29851519 29851519 1 + C T LUSC 29851532 + 29851512 29851552 41 TTTTCCTCCAGCCAGGAGAGCAGCTGGAACAAGGCATCCAG TTTTCCTTCAGCCAGGAGAGCAGCTGGAACAAGGCATCCAG < 41bp 1 0.472261958045977 1 0.438630402088165 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29851532 chr16:29851519 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_29257 0 0 1 1 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29524 DeepMRMD:1;iRNA_m5C:0.999536712157815 29525 chr1 164790808 164790808 1 + G A LUSC 164790815 + 164790795 164790835 41 ATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG ATCAGCCAGACAGAAGGATACAGTGATGGACTCGCAGCCAG < 41bp 1 0.643239285670352 1 0.386804282665253 experiment 0.713521428659297 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790815 chr1:164790808 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_29258 0 0 1 0 1 Ribosome 1 0.500231290119832 1 0.999537419760336 hm5C_site_29525 DeepMRMD:1;iRNA_m5C:0.999537419760336 29526 chr17 1747903 1747903 1 + C T LUSC 1747884 + 1747864 1747904 41 GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTCG GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTTG < 41bp 1 0.639992622829628 1 0.180166810750961 experiment 0.720014754340743 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1747884 chr17:1747903 synonymous SNV . 0 40 hm5C_associated_SNPs_29259 0 0 1 0 2 chromatin 1 0.500231643800423 1 0.999536712399154 hm5C_site_29526 DeepMRMD:1;iRNA_m5C:0.999536712399154 29527 chr19 37853764 37853764 1 + C T LUSC 37853759 + 37853739 37853779 41 CAGCGGACACACTCAGGGCTCAAGCCTTATGTGTGCAAGGA CAGCGGACACACTCAGGGCTCAAGCTTTATGTGTGCAAGGA < 41bp 1 0.380565126933057 1 0.138152658939362 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HKR1 ENSG00000181666 CDS Human protein_coding chr19:37853759 chr19:37853764 nonsynonymous SNV 0.979 3 26 hm5C_associated_SNPs_29260 0 0 1 0 0 exosome 1 0.500231643866131 1 0.999536712267737 hm5C_site_29527 DeepMRMD:1;iRNA_m5C:0.999536712267737 29528 chr16 4700463 4700463 1 + C T LUSC 4700472 + 4700452 4700492 41 GATCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT GATCTGAACTTTCTGGGCAGCCGCCCGGTCCAGGTGGGTCT < 41bp 1 0.0940700627179087 1 0.106842458248138 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4700472 chr16:4700463 synonymous SNV . 0 12 hm5C_associated_SNPs_29261 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29528 DeepMRMD:1;iRNA_m5C:0.999536712157815 29529 chr20 36012653 36012653 1 + C T LUSC 36012654 + 36012634 36012674 41 CGCTGGCGGGGGCGCTTTCCCCGCCTCGCAGACCCCCAGCA CGCTGGCGGGGGCGCTTTCTCCGCCTCGCAGACCCCCAGCA < 41bp 1 0.68209350945818 1 0.835253953933716 experiment 0.63581298108364 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SRC ENSG00000197122 CDS Human protein_coding chr20:36012654 chr20:36012653 nonsynonymous SNV 0.890 0 20 hm5C_associated_SNPs_29262 0 0 0 0 0 Ribosome 1 0.500231643921092 0.329492092132568 0.999536712157815 hm5C_site_29529 DeepMRMD:0.329492092132568;iRNA_m5C:0.999536712157815 29530 chr5 72798834 72798834 1 + C T LUSC 72798844 + 72798824 72798864 41 CATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC CATTACAGGCTATGCTGAGACAAAGCAGCTGACAGAAATGC < 41bp 1 0.620484198751193 1 0.363069653511047 experiment 0.759031602497614 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798844 chr5:72798834 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_29263 0 0 1 0 1 Ribosome 1 0.500233580871848 1 0.999532838256303 hm5C_site_29530 DeepMRMD:1;iRNA_m5C:0.999532838256303 29531 chr5 150867566 150867566 1 + C T LUSC 150867554 + 150867534 150867574 41 CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCTGGA CTCCCTGCAGGCATCTTGGCCATCCTCATCCCTCGCCTGGA < 41bp 1 0.0924537125142197 1 0.0201666057109833 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867554 chr5:150867566 synonymous SNV . 0 33 hm5C_associated_SNPs_29264 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643978068 1 0.999536712043864 hm5C_site_29531 DeepMRMD:1;iRNA_m5C:0.999536712043864 29532 chr5 175933835 175933835 1 + C T LUSC 175933837 + 175933817 175933857 41 CAGATTGAAGCCAATTTTCCCAGGCGAGTGCTGCCCTGCAT CAGATTGAAGCCAATTTTTCCAGGCGAGTGCTGCCCTGCAT < 41bp 1 0.694550036603567 1 0.868500471115112 experiment 0.610899926792865 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAF2 ENSG00000113194 CDS Human protein_coding chr5:175933837 chr5:175933835 nonsynonymous SNV 0.997 4 19 hm5C_associated_SNPs_29265 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643878502 0.262999057769776 0.999536712242996 hm5C_site_29532 DeepMRMD:0.262999057769776;iRNA_m5C:0.999536712242996 29533 chr5 175933835 175933835 1 + C T LUSC 175933855 + 175933835 175933875 41 CCCAGGCGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGCC TCCAGGCGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGCC < 41bp 1 0.114440371721481 1 0.0869822204113007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAF2 ENSG00000113194 CDS Human protein_coding chr5:175933855 chr5:175933835 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_29266 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921116 1 0.999536712157768 hm5C_site_29533 DeepMRMD:1;iRNA_m5C:0.999536712157768 29534 chr17 78321325 78321325 1 + C T LUSC 78321328 + 78321308 78321348 41 CATTCTTCGAGGGGGACCAGCAGCCGGAGATTATTTTTGGT CATTCTTCGAGGGGGACTAGCAGCCGGAGATTATTTTTGGT < 41bp 1 0.122960498330236 1 0.579454839229584 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78321328 chr17:78321325 stopgain 0.422 0 18 hm5C_associated_SNPs_29267 0 0 1 0 0 Nucleus 1 0.500231643921092 0.841090321540832 0.999536712157815 hm5C_site_29534 DeepMRMD:0.841090321540832;iRNA_m5C:0.999536712157815 29535 chr13 113459345 113459345 1 + C T LUSC 113459327 + 113459307 113459347 41 GAACAATTCAGAAGAGTAGCCAACTTTTATTTCCTTATCAT GAACAATTCAGAAGAGTAGCCAACTTTTATTTCCTTATTAT < 41bp 1 0.0865604325498949 1 0.120345741510391 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ATP11A ENSG00000068650 CDS Human protein_coding chr13:113459327 chr13:113459345 synonymous SNV . 0 39 hm5C_associated_SNPs_29268 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643911844 1 0.999536712176312 hm5C_site_29535 DeepMRMD:1;iRNA_m5C:0.999536712176312 29536 chr1 28159278 28159278 1 + C T LUSC 28159277 + 28159257 28159297 41 TATTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTG TATTTTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTG < 41bp 1 0.359049597812901 1 0.39692023396492 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159277 chr1:28159278 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_29269 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29536 DeepMRMD:1;iRNA_m5C:0.999536712157815 29537 chr1 28159278 28159278 1 + C T LUSC 28159279 + 28159259 28159299 41 TTTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGA TTTTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGA < 41bp 1 0.0983199551951231 1 0.122031956911087 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159279 chr1:28159278 nonsynonymous SNV 0.996 4 20 hm5C_associated_SNPs_29270 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29537 DeepMRMD:1;iRNA_m5C:0.999536712157815 29538 chr1 28159278 28159278 1 + C T LUSC 28159280 + 28159260 28159300 41 TTTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGAT TTTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGAT < 41bp 1 0.064707099614726 1 0.0674471259117126 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159280 chr1:28159278 nonsynonymous SNV 0.996 4 19 hm5C_associated_SNPs_29271 0 0 1 0 2 Ribosome 1 0.500231643921033 1 0.999536712157935 hm5C_site_29538 DeepMRMD:1;iRNA_m5C:0.999536712157935 29539 chr1 28159278 28159278 1 + C T LUSC 28159281 + 28159261 28159301 41 TTTCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATG TTTCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGATG < 41bp 1 0.385380719327919 1 0.0422553420066833 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159281 chr1:28159278 nonsynonymous SNV 0.996 4 18 hm5C_associated_SNPs_29272 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29539 DeepMRMD:1;iRNA_m5C:0.999536712157815 29540 chr1 28159278 28159278 1 + C T LUSC 28159283 + 28159263 28159303 41 TCAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTA TCAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGATGTA < 41bp 1 0.593286680873816 1 0.239507049322128 experiment 0.813426638252368 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159283 chr1:28159278 nonsynonymous SNV 0.996 4 16 hm5C_associated_SNPs_29273 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29540 DeepMRMD:1;iRNA_m5C:0.999536712157815 29541 chr1 28159278 28159278 1 + C T LUSC 28159284 + 28159264 28159304 41 CAGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAG CAGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGATGTAG < 41bp 1 0.378476257625227 1 0.158987760543823 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159284 chr1:28159278 nonsynonymous SNV 0.996 4 15 hm5C_associated_SNPs_29274 0 0 1 0 2 Ribosome 1 0.500231643923056 1 0.999536712153889 hm5C_site_29541 DeepMRMD:1;iRNA_m5C:0.999536712153889 29542 chr1 28159278 28159278 1 + C T LUSC 28159285 + 28159265 28159305 41 AGGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAGT AGGGCAGGTAAGCTCCCTCCCGGTTTACATCTGGATGTAGT < 41bp 1 0.279404807623189 1 0.266636967658997 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28159285 chr1:28159278 nonsynonymous SNV 0.996 4 14 hm5C_associated_SNPs_29275 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29542 DeepMRMD:1;iRNA_m5C:0.999536712157815 29543 chr12 113388595 113388595 1 + C T LUSC 113388604 + 113388584 113388624 41 GGACCAGGGGCCCCGCCGCGCAGAGATCCTTGATGAGATGC GGACCAGGGGCTCCGCCGCGCAGAGATCCTTGATGAGATGC < 41bp 1 0.49328119911102 1 0.527812540531158 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113388604 chr12:113388595 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_29276 0 0 0 0 1 Nucleus 1 0.500231643921092 0.944374918937684 0.999536712157816 hm5C_site_29543 DeepMRMD:0.944374918937684;iRNA_m5C:0.999536712157816 29544 chr19 39860353 39860353 1 + C T LUSC 39860363 + 39860343 39860383 41 TCCTGCTGTCCCACCTTCCCCTGCTTCAGCCAGGCAACACA TCCTGCTGTCTCACCTTCCCCTGCTTCAGCCAGGCAACACA < 41bp 1 0.423511515932666 1 0.209067523479462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39860363 chr19:39860353 synonymous SNV . 0 11 hm5C_associated_SNPs_29277 0 0 1 0 1 Ribosome 1 0.500225436344102 1 0.999549127311796 hm5C_site_29544 DeepMRMD:1;iRNA_m5C:0.999549127311796 29545 chr19 39860353 39860353 1 + C T LUSC 39860373 + 39860353 39860393 41 CCACCTTCCCCTGCTTCAGCCAGGCAACACAGAGGCCAAGT TCACCTTCCCCTGCTTCAGCCAGGCAACACAGAGGCCAAGT < 41bp 1 0.477652743156912 1 0.541096210479736 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39860373 chr19:39860353 synonymous SNV . 0 1 hm5C_associated_SNPs_29278 0 0 1 0 1 Ribosome 1 0.500231699146906 0.917807579040528 0.999536601706189 hm5C_site_29545 DeepMRMD:0.917807579040528;iRNA_m5C:0.999536601706189 29546 chr20 3781951 3781951 1 + C T LUSC 3781963 + 3781943 3781983 41 CCCCTGGCCCTAGGTCGCTTCTCTCTGACCCCTGCAGAGGG CCCCTGGCTCTAGGTCGCTTCTCTCTGACCCCTGCAGAGGG < 41bp 1 0.186554405420898 1 0.700646162033081 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC25B ENSG00000101224 CDS Human protein_coding chr20:3781963 chr20:3781951 synonymous SNV . 0 9 hm5C_associated_SNPs_29279 0 0 1 0 1 Ribosome 1 0.500231643920969 0.598707675933838 0.999536712158062 hm5C_site_29546 DeepMRMD:0.598707675933838;iRNA_m5C:0.999536712158062 29547 chr19 39215157 39215157 1 + C T LUSC 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGCGCCGCCAGTTTGCCAGCCAGGCCAATGTTGTGGGGCC < 41bp 1 0.303340114911917 1 0.785703897476196 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215157 synonymous SNV . 0 15 hm5C_associated_SNPs_29280 0 0 1 0 2 Nucleus 1 0.500231643921092 0.428592205047608 0.999536712157815 hm5C_site_29547 DeepMRMD:0.428592205047608;iRNA_m5C:0.999536712157815 29548 chr19 39215157 39215157 1 + C T LUSC 39215169 + 39215149 39215189 41 CGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT CGCCAGTTTGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT < 41bp 1 0.270402974095775 1 0.08881875872612 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215169 chr19:39215157 synonymous SNV . 0 9 hm5C_associated_SNPs_29281 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29548 DeepMRMD:1;iRNA_m5C:0.999536712157815 29549 chr2 32666418 32666418 1 + A T LUSC 32666438 + 32666418 32666458 41 AATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCCG TATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCCG < 41bp 1 0.0401067832982818 1 0.424582988023758 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32666438 chr2:32666418 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_29282 0 0 1 0 1 Nucleus 1 0.500231660566148 1 0.999536678867704 hm5C_site_29549 DeepMRMD:1;iRNA_m5C:0.999536678867704 29550 chr16 2284196 2284196 1 + A G LUSC 2284209 + 2284189 2284229 41 TGCGCGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCT TGCGCGCGGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCT < 41bp 1 0.0594601152444705 1 0.1412692964077 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284209 chr16:2284196 nonsynonymous SNV 0.863 0 8 hm5C_associated_SNPs_29283 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_29550 DeepMRMD:1;iRNA_m5C:0.999536712157815 29551 chr16 2284196 2284196 1 + A G LUSC 2284212 + 2284192 2284232 41 GCGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCTCAA GCGCGGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCTCAA < 41bp 1 0.646469317020565 1 0.200860261917114 experiment 0.70706136595887 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284212 chr16:2284196 nonsynonymous SNV 0.863 0 5 hm5C_associated_SNPs_29284 0 0 1 0 1 chromatin 1 0.500231600737346 1 0.999536798525308 hm5C_site_29551 DeepMRMD:1;iRNA_m5C:0.999536798525308 29552 chr12 109629527 109629527 1 + G A LUSC 109629531 + 109629511 109629551 41 CCAGAACAACGACATCGACACCGGGTGGTTGGACTACCTCA CCAGAACAACGACATCAACACCGGGTGGTTGGACTACCTCA < 41bp 1 0.347225104516806 1 0.731180012226105 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109629531 chr12:109629527 nonsynonymous SNV 0.450 4 17 hm5C_associated_SNPs_29285 0 0 1 0 1 Nucleus 1 0.500231643921078 0.53763997554779 0.999536712157843 hm5C_site_29552 DeepMRMD:0.53763997554779;iRNA_m5C:0.999536712157843 29553 chr16 81654514 81654514 1 + C T LUSC 81654513 + 81654493 81654533 41 TACCTGCGAGACCAGTGGTTCCATTCTCTGCAATGGAAGGT TACCTGCGAGACCAGTGGTTCTATTCTCTGCAATGGAAGGT < 41bp 1 0.0454780528480105 1 0.0868176519870758 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CMIP ENSG00000153815 CDS Human protein_coding chr16:81654513 chr16:81654514 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_29286 0 0 1 0 2 Cytosol 1 0.500231641175139 1 0.999536717649722 hm5C_site_29553 DeepMRMD:1;iRNA_m5C:0.999536717649722 29554 chrX 149905133 149905133 1 + C T LUSC 149905115 + 149905095 149905135 41 GTGCTTACCCAAATGCAGAACTTGTGTTCTTGGAGATCCAC GTGCTTACCCAAATGCAGAACTTGTGTTCTTGGAGATCTAC < 41bp 1 0.128162746541938 1 0.0456609129905701 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905115 chrX:149905133 nonsynonymous SNV 0.998 4 39 hm5C_associated_SNPs_29287 0 0 1 0 1 Ribosome 1 0.500231643921036 1 0.999536712157928 hm5C_site_29554 DeepMRMD:1;iRNA_m5C:0.999536712157928 29555 chr9 131669688 131669688 1 + C T LUSC 131669678 + 131669658 131669698 41 GGGCAGCCCCTGGCCCGGAGCCCACCTACCCCAACTCCACC GGGCAGCCCCTGGCCCGGAGCCCACCTACCTCAACTCCACC < 41bp 1 0.0768486150555772 1 0.225367069244385 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC8A ENSG00000136802 CDS Human protein_coding chr9:131669678 chr9:131669688 nonsynonymous SNV 0.674 0 31 hm5C_associated_SNPs_29288 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_29555 DeepMRMD:1;iRNA_m5C:0.999536712157814 29556 chr14 20822281 20822281 1 + C G LUSC 20822301 + 20822281 20822321 41 CTCCCTTGAAGCCAGAGTCACAGCTAGATCTTCGGGTACAG GTCCCTTGAAGCCAGAGTCACAGCTAGATCTTCGGGTACAG < 41bp 1 0.480812635332624 1 0.280977725982666 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARP2 ENSG00000129484 CDS Human protein_coding chr14:20822301 chr14:20822281 nonsynonymous SNV 0.822 0 1 hm5C_associated_SNPs_29289 0 0 1 0 0 Cytosol 1 0.500230966815511 1 0.999538066368978 hm5C_site_29556 DeepMRMD:1;iRNA_m5C:0.999538066368978 29557 chr6 32123555 32123555 1 + A G LUSC 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTGTG < 41bp 1 0.691291780664513 1 0.947803735733032 experiment 0.617416438670974 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123555 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_29290 0 0 1 2 2 chromatin 1 0.500231644193783 0.104392528533936 0.999536711612434 hm5C_site_29557 DeepMRMD:0.104392528533936;iRNA_m5C:0.999536711612434 29558 chr5 139893001 139893001 1 + C A LUSC 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTGTGAAGGCTAAAGAACAGCAAGCTGCAGAAGCAAATAAG < 41bp 1 0.18816564612212 1 0.358239591121674 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139893001 nonsynonymous SNV 0.991 3 17 hm5C_associated_SNPs_29291 0 0 1 0 2 unknown 1 0.50023177203041 1 0.99953645593918 hm5C_site_29558 DeepMRMD:1;iRNA_m5C:0.99953645593918 29559 chr9 131843434 131843434 1 + G T LUSC 131843453 + 131843433 131843473 41 CGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC CTCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC < 41bp 1 0.34330837761143 1 0.421691328287125 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131843453 chr9:131843434 synonymous SNV . 0 2 hm5C_associated_SNPs_29293 0 0 1 0 1 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_29559 DeepMRMD:1;iRNA_m5C:0.99953671215781 29560 chr17 7483875 7483875 1 + A G LUSC 7483883 + 7483863 7483903 41 TCTCATTCCCCTATGGACACCTCAGCTTTGGATTCATGCAG TCTCATTCCCCTGTGGACACCTCAGCTTTGGATTCATGCAG < 41bp 1 0.483821272919669 1 0.247360557317734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD68 ENSG00000129226 CDS Human protein_coding chr17:7483883 chr17:7483875 nonsynonymous SNV 0.994 0 13 hm5C_associated_SNPs_29294 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164391273 1 0.99953671217454 hm5C_site_29560 DeepMRMD:1;iRNA_m5C:0.99953671217454 29561 chr10 45486408 45486408 1 + T G LUSC 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGCGGACAAAATGAAAAGACTGC < 41bp 1 0.0752487181593792 1 0.289820343255997 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486408 stopgain 1.000 1 31 hm5C_associated_SNPs_29295 0 0 1 0 1 Cytosol 1 0.500231643920883 1 0.999536712158233 hm5C_site_29561 DeepMRMD:1;iRNA_m5C:0.999536712158233 29562 chr1 249212010 249212010 1 + C A LUSC 249212016 + 249211996 249212036 41 AGTGAGGAGATCATCGTGTGCCGCTGGCACGATAGCAGCGT AGTGAGGAGATCATAGTGTGCCGCTGGCACGATAGCAGCGT < 41bp 1 0.419469521150631 1 0.109942108392715 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212016 chr1:249212010 synonymous SNV . 0 15 hm5C_associated_SNPs_29296 0 0 0 0 0 Cytosol 1 0.500231751925233 1 0.999536496149534 hm5C_site_29562 DeepMRMD:1;iRNA_m5C:0.999536496149534 29563 chr2 74273984 74273984 1 + G T LUSC 74273996 + 74273976 74274016 41 GTGAGGCCGGCCTCCCAGCACCAAGCACCAGGCCACTCCTC GTGAGGCCTGCCTCCCAGCACCAAGCACCAGGCCACTCCTC < 41bp 1 0.198679442667935 1 0.328956067562103 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74273996 chr2:74273984 nonsynonymous SNV 0.989 2 9 hm5C_associated_SNPs_29297 0 0 0 0 0 Cytosol 1 0.500231643937749 1 0.999536712124502 hm5C_site_29563 DeepMRMD:1;iRNA_m5C:0.999536712124502 29564 chr7 101845120 101845120 1 + G T LUSC 101845118 + 101845098 101845138 41 GCCAAGGCCGAAGAAACGGGCGGCGGGAAAGAGAAGGGCAG GCCAAGGCCGAAGAAACGGGCGTCGGGAAAGAGAAGGGCAG < 41bp 1 0.124369893241709 1 0.401083588600159 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101845118 chr7:101845120 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_29298 0 0 1 0 0 Exosome 1 0.500231643921696 1 0.999536712156608 hm5C_site_29564 DeepMRMD:1;iRNA_m5C:0.999536712156608 29565 chr3 20019841 20019841 1 + A G LUSC 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAGTCCTATGCAGATGACAATAGTTTATTATTCGTGGA < 41bp 1 0.508938689208916 1 0.139919310808182 experiment 0.982122621582168 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019841 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_29299 0 0 1 1 2 Ribosome 1 0.500231643928969 1 0.999536712142063 hm5C_site_29565 DeepMRMD:1;iRNA_m5C:0.999536712142063 29566 chr20 49458360 49458360 1 + G T LUSC 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG TCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG < 41bp 1 0.267629642851241 1 0.0470914244651794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458360 nonsynonymous SNV 0.116 4 1 hm5C_associated_SNPs_29300 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29566 DeepMRMD:1;iRNA_m5C:0.999536712157815 29567 chr5 21501807 21501807 1 + C G LUSC 21501804 + 21501784 21501824 41 TTTGCCTTGAATCCCAGGATCCACCTTGATGTTCAGTGAAG TTTGCCTTGAATCCCAGGATCCAGCTTGATGTTCAGTGAAG < 41bp 1 0.132302966927298 1 0.0491733551025391 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21501804 chr5:21501807 . . 0 24 hm5C_associated_SNPs_29301 0 0 1 0 1 unknown 1 0.500231643921216 1 0.999536712157568 hm5C_site_29567 DeepMRMD:1;iRNA_m5C:0.999536712157568 29568 chr3 179424775 179424775 1 + G T LUSC 179424778 + 179424758 179424798 41 TCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAATGA TCTCCATACAGAAAGCATGACCCAGACACGTGGGAAAATGA < 41bp 1 0.0756846331473705 1 0.0663194060325623 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179424778 chr3:179424775 nonsynonymous SNV 0.996 3 18 hm5C_associated_SNPs_29302 0 0 1 0 2 Ribosome 1 0.500231499576969 1 0.999537000846063 hm5C_site_29568 DeepMRMD:1;iRNA_m5C:0.999537000846063 29569 chr17 53014037 53014037 1 + G A LUSC 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TTTTAGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA < 41bp 1 0.664306814269484 1 0.572838187217712 experiment 0.671386371461031 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014037 synonymous SNV . 0 5 hm5C_associated_SNPs_29303 0 0 1 0 2 Cytosol 1 0.500234385127548 0.854323625564576 0.999531229744905 hm5C_site_29569 DeepMRMD:0.854323625564576;iRNA_m5C:0.999531229744905 29570 chr1 109642935 109642935 1 + G C LUSC 109642927 + 109642907 109642947 41 CGCGTGAGTGTGTGAGTGTGCGCGCTTGGAGCGTGTTAGGC CGCGTGAGTGTGTGAGTGTGCGCGCTTGCAGCGTGTTAGGC < 41bp 1 0.642679903178422 1 0.136819839477539 experiment 0.714640193643156 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642927 chr1:109642935 . . 0 29 hm5C_associated_SNPs_29304 0 0 1 0 0 unknown 1 0.500256811425054 1 0.999486377149892 hm5C_site_29570 DeepMRMD:1;iRNA_m5C:0.999486377149892 29571 chr1 109642935 109642935 1 + G C LUSC 109642938 + 109642918 109642958 41 GTGAGTGTGCGCGCTTGGAGCGTGTTAGGCGAGTGCGTGCG GTGAGTGTGCGCGCTTGCAGCGTGTTAGGCGAGTGCGTGCG < 41bp 1 0.568255823188256 1 0.444357395172119 experiment 0.863488353623488 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642938 chr1:109642935 . . 0 18 hm5C_associated_SNPs_29305 0 0 1 0 0 unknown 1 0.50023192968719 1 0.999536140625619 hm5C_site_29571 DeepMRMD:1;iRNA_m5C:0.999536140625619 29572 chr1 109642935 109642935 1 + G C LUSC 109642953 + 109642933 109642973 41 TGGAGCGTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCC TGCAGCGTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCC < 41bp 1 0.576273885309565 1 0.47759023308754 experiment 0.84745222938087 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642953 chr1:109642935 . . 0 3 hm5C_associated_SNPs_29307 0 0 1 0 0 unknown 1 0.500231643693102 1 0.999536712613797 hm5C_site_29572 DeepMRMD:1;iRNA_m5C:0.999536712613797 29573 chr9 80858453 80858453 1 + G T LUSC 80858436 + 80858416 80858456 41 GAGTCTTCGCTATAGGAGACCTGATCTTGACTGTATGGCTG GAGTCTTCGCTATAGGAGACCTGATCTTGACTGTATGTCTG < 41bp 1 0.330728235189065 1 0.0529457926750183 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP78 ENSG00000148019 CDS Human protein_coding chr9:80858436 chr9:80858453 nonsynonymous SNV 0.998 2 38 hm5C_associated_SNPs_29308 0 0 1 0 2 Nucleus 1 0.500231507577586 1 0.999536984844828 hm5C_site_29573 DeepMRMD:1;iRNA_m5C:0.999536984844828 29574 chr3 127335943 127335943 1 + C T LUSC 127335929 + 127335909 127335949 41 GGGCCCTGGTTCTGGCTGACCGAGGAGTGTGTCTCATTGAT GGGCCCTGGTTCTGGCTGACCGAGGAGTGTGTCTTATTGAT < 41bp 1 0.699797931923965 1 0.758516728878021 experiment 0.600404136152071 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127335929 chr3:127335943 synonymous SNV . 0 35 hm5C_associated_SNPs_29309 0 0 1 0 1 Cytosol 1 0.500231643662983 0.482966542243958 0.999536712674035 hm5C_site_29574 DeepMRMD:0.482966542243958;iRNA_m5C:0.999536712674035 29575 chr12 112926290 112926290 1 + C G LUSC 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTGTTAT < 41bp 1 0.159755107261468 1 0.0231238603591919 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926290 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_29310 0 0 0 0 2 Ribosome 1 0.50023157464144 1 0.999536850717119 hm5C_site_29575 DeepMRMD:1;iRNA_m5C:0.999536850717119 29576 chr1 156883186 156883186 1 + C G LUSC 156883191 + 156883171 156883211 41 GTCCCCTCTTAGGTTCCAGGCCCGCTCTTTGCCAGCCTGCA GTCCCCTCTTAGGTTGCAGGCCCGCTCTTTGCCAGCCTGCA < 41bp 1 0.110005114741447 1 0.0402844250202179 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883191 chr1:156883186 nonsynonymous SNV 0.960 2 16 hm5C_associated_SNPs_29311 0 0 0 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29576 DeepMRMD:1;iRNA_m5C:0.999536712157815 29577 chr19 36113809 36113809 1 + G C LUSC 36113820 + 36113800 36113840 41 GCCCTCTCTGAGGAGCTCTGCCAGGGCCTGTCCCTGCCCCA GCCCTCTCTCAGGAGCTCTGCCAGGGCCTGTCCCTGCCCCA < 41bp 1 0.621589638317009 1 0.546387374401093 experiment 0.756820723365983 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36113820 chr19:36113809 nonsynonymous SNV 0.106 0 10 hm5C_associated_SNPs_29312 0 0 1 0 1 chromatin 1 0.500231643685832 0.907225251197814 0.999536712628336 hm5C_site_29577 DeepMRMD:0.907225251197814;iRNA_m5C:0.999536712628336 29578 chr5 149751728 149751728 1 + G A LUSC 149751738 + 149751718 149751758 41 CAAGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT CAAGAAGCCAAAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT < 41bp 1 0.309406457919195 1 0.654821693897247 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751738 chr5:149751728 nonsynonymous SNV 0.259 0 11 hm5C_associated_SNPs_29314 0 0 1 0 1 Nucleus 1 0.500231643992232 0.690356612205506 0.999536712015537 hm5C_site_29578 DeepMRMD:0.690356612205506;iRNA_m5C:0.999536712015537 29579 chr3 186302269 186302269 1 + G C LUSC 186302256 + 186302236 186302276 41 TAAGATCACCAGGCCAGGAGCGAAGCTATGGAAGAAAGGGG TAAGATCACCAGGCCAGGAGCGAAGCTATGGAACAAAGGGG < 41bp 1 0.329953507137883 1 0.396906077861786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302256 chr3:186302269 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_29315 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29579 DeepMRMD:1;iRNA_m5C:0.999536712157815 29580 chr3 186302269 186302269 1 + G C LUSC 186302261 + 186302241 186302281 41 TCACCAGGCCAGGAGCGAAGCTATGGAAGAAAGGGGAAGGG TCACCAGGCCAGGAGCGAAGCTATGGAACAAAGGGGAAGGG < 41bp 1 0.424866263662923 1 0.118182748556137 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302261 chr3:186302269 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_29316 0 0 1 0 1 Ribosome 1 0.50023164391802 1 0.99953671216396 hm5C_site_29580 DeepMRMD:1;iRNA_m5C:0.99953671216396 29581 chr8 124146371 124146371 1 + A T LUSC 124146369 + 124146349 124146389 41 CATAGGTATATATGAGAGATCGAGAAATTGCTGCCACAGCC CATAGGTATATATGAGAGATCGTGAAATTGCTGCCACAGCC < 41bp 1 0.647551424382993 1 0.541770696640015 experiment 0.704897151234014 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124146369 chr8:124146371 synonymous SNV . 0 23 hm5C_associated_SNPs_29317 0 0 1 0 2 Cytosol 1 0.500231643921384 0.91645860671997 0.999536712157231 hm5C_site_29581 DeepMRMD:0.91645860671997;iRNA_m5C:0.999536712157231 29582 chr5 149751721 149751721 1 + G T LUSC 149751738 + 149751718 149751758 41 CAAGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT CAATAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT < 41bp 1 0.328704228790913 1 0.554904043674469 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751738 chr5:149751721 nonsynonymous SNV 0.001 2 4 hm5C_associated_SNPs_29318 0 0 1 0 1 Nucleus 1 0.500231643513148 0.890191912651062 0.999536712973704 hm5C_site_29582 DeepMRMD:0.890191912651062;iRNA_m5C:0.999536712973704 29583 chr5 102472516 102472516 1 + A T LUSC 102472507 + 102472487 102472527 41 TAATCAATGACTTGAATATGCAGTATCTCATACAAGATAGG TAATCAATGACTTGAATATGCAGTATCTCTTACAAGATAGG < 41bp 1 0.345679380180501 1 0.175760924816132 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102472507 chr5:102472516 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_29319 0 0 1 2 2 Cytosol 1 0.500231493928286 1 0.999537012143427 hm5C_site_29583 DeepMRMD:1;iRNA_m5C:0.999537012143427 29584 chr13 114541067 114541067 1 + G C LUSC 114541049 - 114541029 114541069 41 CTCTCCTCTGATGGCAGGACCTGCCAAGGTAAGGCCCTGGG CTGTCCTCTGATGGCAGGACCTGCCAAGGTAAGGCCCTGGG < 41bp 1 0.290643647087885 1 0.0919685661792755 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541049 chr13:114541067 synonymous SNV . 0 3 hm5C_associated_SNPs_29320 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921095 1 0.999536712157809 hm5C_site_29584 DeepMRMD:1;iRNA_m5C:0.999536712157809 29585 chr13 114541067 114541067 1 + G C LUSC 114541062 - 114541042 114541082 41 CAGCGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG CAGCGGCTTCGAGCTGTCCTCTGATGGCAGGACCTGCCAAG < 41bp 1 0.555083597298836 1 0.441971242427826 experiment 0.889832805402327 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541062 chr13:114541067 synonymous SNV . 0 16 hm5C_associated_SNPs_29321 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157813 hm5C_site_29585 DeepMRMD:1;iRNA_m5C:0.999536712157813 29586 chr2 128184749 128184749 1 + G A LUSC 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTAACAGCGGCCCACTGCATGGATGAGT < 41bp 1 0.335146534687349 1 0.369492590427399 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184749 synonymous SNV . 0 16 hm5C_associated_SNPs_29322 0 0 1 0 2 nucleus 1 0.500231644128767 1 0.999536711742466 hm5C_site_29586 DeepMRMD:1;iRNA_m5C:0.999536711742466 29587 chr17 48166608 48166608 1 + G T LUSC 48166618 + 48166598 48166638 41 CCAGCTGGCAGACTCGGGACCAATACTACTGACGTCCTCCC CCAGCTGGCATACTCGGGACCAATACTACTGACGTCCTCCC < 41bp 1 0.338581924155923 1 0.0740518271923065 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48166618 chr17:48166608 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_29323 0 0 1 4 0 Cytosol 1 0.500231643920651 1 0.999536712158698 hm5C_site_29587 DeepMRMD:1;iRNA_m5C:0.999536712158698 29588 chr2 63834097 63834097 1 + T A LUSC 63834096 + 63834076 63834116 41 GACAGAAGAAAAAGAAAGTGCTTTTGAATTTCTTTCCTCTG GACAGAAGAAAAAGAAAGTGCATTTGAATTTCTTTCCTCTG < 41bp 1 0.0740516980452779 1 0.0693476498126984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MDH1 ENSG00000014641 CDS Human protein_coding chr2:63834096 chr2:63834097 synonymous SNV . 0 22 hm5C_associated_SNPs_29324 0 0 1 0 0 Cytosol 1 0.500231650830413 1 0.999536698339174 hm5C_site_29588 DeepMRMD:1;iRNA_m5C:0.999536698339174 29589 chr16 31235551 31235551 1 + G T LUSC 31235556 + 31235536 31235576 41 GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG GCACCCGAGCCTGGTTGTGTCTTCCTCTGGCCGCCGCGTGG < 41bp 1 0.270687278980698 1 0.08463454246521 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235556 chr16:31235551 synonymous SNV . 0 16 hm5C_associated_SNPs_29325 0 0 1 0 1 exosome 1 0.500231643912257 1 0.999536712175486 hm5C_site_29589 DeepMRMD:1;iRNA_m5C:0.999536712175486 29590 chr12 104341167 104341167 1 + G C LUSC 104341157 + 104341137 104341177 41 ACAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGT ACAGAAGACACAGAGCAAGACGAAGATGAACAAATGGATGT < 41bp 1 0.534116523058723 1 0.163905620574951 experiment 0.931766953882553 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104341157 chr12:104341167 nonsynonymous SNV 0.046 1 31 hm5C_associated_SNPs_29326 0 0 1 0 3 Nucleus 1 0.500209881977182 1 0.999580236045637 hm5C_site_29590 DeepMRMD:1;iRNA_m5C:0.999580236045637 29591 chr16 86602312 86602312 1 + C T LUSC 86602310 + 86602290 86602330 41 TGCGGGAGATGTTCAACTCCCACCGGCTGGGGATTGAGAAC TGCGGGAGATGTTCAACTCCCATCGGCTGGGGATTGAGAAC < 41bp 1 0.295466038121375 1 0.54192191362381 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FOXC2 ENSG00000176692 CDS Human protein_coding chr16:86602310 chr16:86602312 synonymous SNV . 0 23 hm5C_associated_SNPs_29327 0 0 0 0 0 exosome 1 0.500231645407196 0.91615617275238 0.999536709185608 hm5C_site_29591 DeepMRMD:0.91615617275238;iRNA_m5C:0.999536709185608 29592 chr15 64792172 64792172 1 + T G LUSC 64792174 + 64792154 64792194 41 CAGAAAAGGATCCTGGGGTCCTCCAGCCAGTTCCCTTGGGA CAGAAAAGGATCCTGGGGGCCTCCAGCCAGTTCCCTTGGGA < 41bp 1 0.545843417721514 1 0.881388247013092 experiment 0.908313164556972 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ZNF609 ENSG00000180357 CDS Human protein_coding chr15:64792174 chr15:64792172 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_29328 0 0 1 0 0 Endoplasmic reticulum 1 0.500231642514429 0.237223505973816 0.999536714971141 hm5C_site_29592 DeepMRMD:0.237223505973816;iRNA_m5C:0.999536714971141 29593 chr5 153760026 153760026 1 + G A LUSC 153760010 + 153759990 153760030 41 ATCTCTTGGCTTCTTCAGACCGCATTGCTCGGAACCGCAAG ATCTCTTGGCTTCTTCAGACCGCATTGCTCGGAACCACAAG < 41bp 1 0.177736261671748 1 0.175941705703735 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760010 chr5:153760026 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_29329 0 0 1 0 1 Ribosome 1 0.500231644892775 1 0.99953671021445 hm5C_site_29593 DeepMRMD:1;iRNA_m5C:0.99953671021445 29594 chr5 153760026 153760026 1 + G A LUSC 153760024 + 153760004 153760044 41 TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC TCAGACCGCATTGCTCGGAACCACAAGACCATTGTGTGCCC < 41bp 1 0.273217797313399 1 0.15230655670166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760024 chr5:153760026 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_29330 0 0 1 0 1 Ribosome 1 0.5002316431334 1 0.999536713733201 hm5C_site_29594 DeepMRMD:1;iRNA_m5C:0.999536713733201 29595 chr16 31470928 31470928 1 + G A LUSC 31470910 + 31470890 31470930 41 CCTCGCGCAGCTCGCGGCGGCGGCCGGGGAGGCTCTGGGTG CCTCGCGCAGCTCGCGGCGGCGGCCGGGGAGGCTCTGGATG < 41bp 1 0.433833336970649 1 0.691280424594879 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31470910 chr16:31470928 nonsynonymous SNV 0.910 1 39 hm5C_associated_SNPs_29331 0 0 0 0 0 cytosol 1 0.500231643921092 0.617439150810242 0.999536712157815 hm5C_site_29595 DeepMRMD:0.617439150810242;iRNA_m5C:0.999536712157815 29596 chr2 11053260 11053260 1 + G T LUSC 11053264 + 11053244 11053284 41 GCTGGTTCACCCTGGAGTACCTGCTGCGCCTCTTCTCGTCA GCTGGTTCACCCTGGATTACCTGCTGCGCCTCTTCTCGTCA < 41bp 1 0.642268419132711 1 0.0951747596263885 experiment 0.715463161734577 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11053264 chr2:11053260 nonsynonymous SNV 1.000 5 17 hm5C_associated_SNPs_29332 0 0 0 0 0 exosome 1 0.500231643308657 1 0.999536713382686 hm5C_site_29596 DeepMRMD:1;iRNA_m5C:0.999536713382686 29597 chr17 48434090 48434090 1 + C A LUSC 48434072 + 48434052 48434092 41 CTCACTGCTTACACAGCCTTCGCCCGCCTCAGCCTGCACCA CTCACTGCTTACACAGCCTTCGCCCGCCTCAGCCTGCAACA < 41bp 1 0.351145751685102 1 0.0713188052177429 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48434072 chr17:48434090 nonsynonymous SNV 0.754 0 39 hm5C_associated_SNPs_29333 0 0 0 0 1 nucleolus 1 0.500231626111923 1 0.999536747776154 hm5C_site_29597 DeepMRMD:1;iRNA_m5C:0.999536747776154 29598 chr17 48434090 48434090 1 + C A LUSC 48434109 + 48434089 48434129 41 ACCATGCCGCCACTGCTGCACCCCCAATGGGCACCCCACTC AACATGCCGCCACTGCTGCACCCCCAATGGGCACCCCACTC < 41bp 1 0.12632879234087 1 0.0447928309440613 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48434109 chr17:48434090 nonsynonymous SNV 0.754 0 2 hm5C_associated_SNPs_29334 0 0 0 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29598 DeepMRMD:1;iRNA_m5C:0.999536712157815 29599 chr2 98263887 98263887 1 + G C LUSC 98263871 + 98263851 98263891 41 GGAAGACCCTAATTTAGTCCCCTCCATCTCCAACAAGAGAA GGAAGACCCTAATTTAGTCCCCTCCATCTCCAACAACAGAA < 41bp 1 0.0431111888068695 1 0.0965458154678345 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263871 chr2:98263887 nonsynonymous SNV 0.803 4 37 hm5C_associated_SNPs_29335 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29599 DeepMRMD:1;iRNA_m5C:0.999536712157815 29600 chr2 98263887 98263887 1 + G C LUSC 98263872 + 98263852 98263892 41 GAAGACCCTAATTTAGTCCCCTCCATCTCCAACAAGAGAAT GAAGACCCTAATTTAGTCCCCTCCATCTCCAACAACAGAAT < 41bp 1 0.660740721559392 1 0.506196916103363 experiment 0.678518556881216 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263872 chr2:98263887 nonsynonymous SNV 0.803 4 36 hm5C_associated_SNPs_29336 0 0 1 0 2 Ribosome 1 0.500231643921107 0.987606167793274 0.999536712157787 hm5C_site_29600 DeepMRMD:0.987606167793274;iRNA_m5C:0.999536712157787 29601 chr1 182827347 182827347 1 + G T LUSC 182827338 + 182827318 182827358 41 CCATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA CCATCTTGGAGTGGTTGAAGCTTACTCCGTACTTACAAAGA < 41bp 1 0.19021455425262 1 0.16669362783432 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827338 chr1:182827347 nonsynonymous SNV 0.981 4 30 hm5C_associated_SNPs_29337 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29601 DeepMRMD:1;iRNA_m5C:0.999536712157815 29602 chr1 182827347 182827347 1 + G T LUSC 182827349 + 182827329 182827369 41 TGGTTGAAGCTTACTCCGGACTTACAAAGAAGAAGGAAGGA TGGTTGAAGCTTACTCCGTACTTACAAAGAAGAAGGAAGGA < 41bp 1 0.0735578744600236 1 0.118629425764084 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827349 chr1:182827347 nonsynonymous SNV 0.981 4 19 hm5C_associated_SNPs_29339 0 0 1 0 1 Cytosol 1 0.500231638661753 1 0.999536722676493 hm5C_site_29602 DeepMRMD:1;iRNA_m5C:0.999536722676493 29603 chr5 170736564 170736564 1 + C A LUSC 170736570 + 170736550 170736590 41 GCCTCCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGG GCCTCCTTTGCGGGACTCGGCGCGCCCTTCGAGGACGCGGG < 41bp 1 0.498001795193727 1 0.264842748641968 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736570 chr5:170736564 synonymous SNV . 0 15 hm5C_associated_SNPs_29340 0 0 0 0 0 exosome 1 0.500231643921288 1 0.999536712157423 hm5C_site_29603 DeepMRMD:1;iRNA_m5C:0.999536712157423 29604 chr5 170736564 170736564 1 + C A LUSC 170736572 + 170736552 170736592 41 CTCCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGGAT CTCCTTTGCGGGACTCGGCGCGCCCTTCGAGGACGCGGGAT < 41bp 1 0.316953722931204 1 0.151856184005737 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736572 chr5:170736564 synonymous SNV . 0 13 hm5C_associated_SNPs_29341 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29604 DeepMRMD:1;iRNA_m5C:0.999536712157815 29605 chr5 170736564 170736564 1 + C A LUSC 170736574 + 170736554 170736594 41 CCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGGATCT CCTTTGCGGGACTCGGCGCGCCCTTCGAGGACGCGGGATCT < 41bp 1 0.112610975288092 1 0.052352100610733 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736574 chr5:170736564 synonymous SNV . 0 11 hm5C_associated_SNPs_29342 0 0 0 0 0 exosome 1 0.500231643929431 1 0.999536712141138 hm5C_site_29605 DeepMRMD:1;iRNA_m5C:0.999536712141138 29606 chr5 170736564 170736564 1 + C A LUSC 170736576 + 170736556 170736596 41 TTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGGATCTTA TTTGCGGGACTCGGCGCGCCCTTCGAGGACGCGGGATCTTA < 41bp 1 0.460832960659637 1 0.32326152920723 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736576 chr5:170736564 synonymous SNV . 0 9 hm5C_associated_SNPs_29343 0 0 0 0 0 exosome 1 0.500260890526418 1 0.999478218947165 hm5C_site_29606 DeepMRMD:1;iRNA_m5C:0.999478218947165 29607 chr20 35857089 35857089 1 + A T LUSC 35857080 + 35857060 35857100 41 GATTGAATTTGACTCTGCCTCTGGCACCTACACTCTCTACT GATTGAATTTGACTCTGCCTCTGGCACCTTCACTCTCTACT < 41bp 1 0.408428720943085 1 0.58711564540863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35857080 chr20:35857089 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_29345 0 0 1 0 1 Ribosome 1 0.500231647751794 0.82576870918274 0.999536704496411 hm5C_site_29607 DeepMRMD:0.82576870918274;iRNA_m5C:0.999536704496411 29608 chr7 100334904 100334904 1 + G T LUSC 100334885 + 100334865 100334905 41 GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACACGG GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACACTG < 41bp 1 0.186106803694093 1 0.0793145596981049 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZAN ENSG00000146839 CDS Human protein_coding chr7:100334885 chr7:100334904 nonsynonymous SNV 0.442 2 40 hm5C_associated_SNPs_29346 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29608 DeepMRMD:1;iRNA_m5C:0.999536712157815 29609 chr1 54666042 54666042 1 + G T LUSC 54666050 + 54666030 54666070 41 GCGGAAGTCGGAGCCTCCTCCCCTGGATAGGGTGTACGAGA GCGGAAGTCGGATCCTCCTCCCCTGGATAGGGTGTACGAGA < 41bp 1 0.373027330389449 1 0.85488498210907 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54666050 chr1:54666042 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_29347 0 0 1 0 0 Ribosome 1 0.500231677645324 0.29023003578186 0.999536644709352 hm5C_site_29609 DeepMRMD:0.29023003578186;iRNA_m5C:0.999536644709352 29610 chr7 45688315 45688315 1 + G A LUSC 45688321 + 45688301 45688341 41 GGACTGCTACTACTGCGTGTCGGGCCTCACCCAGCCCAAGA GGACTGCTACTACTACGTGTCGGGCCTCACCCAGCCCAAGA < 41bp 1 0.46334057415026 1 0.788561820983887 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45688321 chr7:45688315 nonsynonymous SNV 0.837 5 15 hm5C_associated_SNPs_29348 0 0 1 0 2 Nucleus 1 0.500231662208609 0.422876358032226 0.999536675582782 hm5C_site_29610 DeepMRMD:0.422876358032226;iRNA_m5C:0.999536675582782 29611 chr16 27761013 27761013 1 + G T LUSC 27761012 + 27760992 27761032 41 GTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG GTGCCTTCGACCGCTCCCACCTGGGACGCATCTCCAACACG < 41bp 1 0.467768974747154 1 0.744532644748688 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27761012 chr16:27761013 nonsynonymous SNV 0.838 1 22 hm5C_associated_SNPs_29349 0 0 0 0 0 Nucleus 1 0.500231643914355 0.510934710502624 0.999536712171289 hm5C_site_29611 DeepMRMD:0.510934710502624;iRNA_m5C:0.999536712171289 29612 chr19 39964942 39964942 1 + G T LUSC 39964940 + 39964920 39964960 41 GGTTCCTACCAGCCCAGCCCCAGCCCCCAGAGCTACCACCA GGTTCCTACCAGCCCAGCCCCATCCCCCAGAGCTACCACCA < 41bp 1 0.134661803806061 1 0.194240748882294 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39964940 chr19:39964942 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_29350 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29612 DeepMRMD:1;iRNA_m5C:0.999536712157815 29613 chr17 15907564 15907564 1 + C G LUSC 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGGTGCGCAGA < 41bp 1 0.128770825298269 1 0.0839388370513916 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907564 nonsynonymous SNV 0.999 2 33 hm5C_associated_SNPs_29351 0 0 1 2 2 Ribosome 1 0.500231643921121 1 0.999536712157758 hm5C_site_29613 DeepMRMD:1;iRNA_m5C:0.999536712157758 29614 chr12 104378655 104378655 1 + C T LUSC 104378675 + 104378655 104378695 41 CGTTCAAGAGGTGCAATATACATTTGACCTACAGCTTGCCC TGTTCAAGAGGTGCAATATACATTTGACCTACAGCTTGCCC < 41bp 1 0.23656302403247 1 0.036694198846817 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TDG ENSG00000139372 CDS Human protein_coding chr12:104378675 chr12:104378655 synonymous SNV . 0 1 hm5C_associated_SNPs_29352 0 0 1 0 1 Cytosol 1 0.500231638774323 1 0.999536722451355 hm5C_site_29614 DeepMRMD:1;iRNA_m5C:0.999536722451355 29615 chr8 42927429 42927429 1 + G T LUSC 42927423 + 42927403 42927443 41 GATGCAAAGAATTATCATGCCTGGCAGCATCGACAATGGGT GATGCAAAGAATTATCATGCCTGGCATCATCGACAATGGGT < 41bp 1 0.49619294763321 1 0.0448567867279053 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FNTA ENSG00000168522;ENSG00000254673 CDS Human other chr8:42927423 chr8:42927429 nonsynonymous SNV 0.995 4 27 hm5C_associated_SNPs_29353 0 0 0 0 1 Endoplasmic reticulum 1 0.500231577287992 1 0.999536845424015 hm5C_site_29615 DeepMRMD:1;iRNA_m5C:0.999536845424015 29616 chr11 8016879 8016879 1 + G C LUSC 8016893 + 8016873 8016913 41 GTTCCCGATGACTTTGAGACCATGCTCAACAGCAACATCAA GTTCCCCATGACTTTGAGACCATGCTCAACAGCAACATCAA < 41bp 1 0.165772812616252 1 0.211518108844757 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3F ENSG00000175390 CDS Human protein_coding chr11:8016893 chr11:8016879 nonsynonymous SNV 0.921 4 7 hm5C_associated_SNPs_29354 0 0 1 0 2 Nucleus 1 0.500232685779802 1 0.999534628440396 hm5C_site_29616 DeepMRMD:1;iRNA_m5C:0.999534628440396 29617 chr14 97018866 97018866 1 + A C LUSC 97018858 + 97018838 97018878 41 TTGACAGCTCTCAATGACAGCAGCCTCGACTTGTCTATGGA TTGACAGCTCTCAATGACAGCAGCCTCGCCTTGTCTATGGA < 41bp 1 0.2441048058274 1 0.100721091032028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97018858 chr14:97018866 nonsynonymous SNV 0.998 2 29 hm5C_associated_SNPs_29355 0 0 1 0 2 Ribosome 1 0.500231643128682 1 0.999536713742637 hm5C_site_29617 DeepMRMD:1;iRNA_m5C:0.999536713742637 29618 chr8 146033195 146033195 1 + C G LUSC 146033186 + 146033166 146033206 41 TTCGCGTGCACAGAGTGCGGCAAGGCGTTCTGCCGCAGGTT TTCGCGTGCACAGAGTGCGGCAAGGCGTTGTGCCGCAGGTT < 41bp 1 0.374402666476672 1 0.516477942466736 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146033186 chr8:146033195 nonsynonymous SNV 0.991 3 30 hm5C_associated_SNPs_29358 0 0 0 0 0 chromatin 1 0.500231643918534 0.967044115066528 0.999536712162931 hm5C_site_29618 DeepMRMD:0.967044115066528;iRNA_m5C:0.999536712162931 29619 chr17 76167718 76167718 1 + C T LUSC 76167712 + 76167692 76167732 41 GCAGCCATCACCTTCAGCTTCTTTTCCATCTTCTCCTGGGT GCAGCCATCACCTTCAGCTTCTTTTCTATCTTCTCCTGGGT < 41bp 1 0.0692420339943767 1 0.0213637948036194 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167712 chr17:76167718 synonymous SNV . 0 27 hm5C_associated_SNPs_29359 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29619 DeepMRMD:1;iRNA_m5C:0.999536712157815 29620 chr4 15008952 15008952 1 + G A LUSC 15008941 + 15008921 15008961 41 TTCCCTAGCCTCTTCTGAAACAGTCTCCCTGGAGCAACCAT TTCCCTAGCCTCTTCTGAAACAGTCTCCCTGAAGCAACCAT < 41bp 1 0.208481644684275 1 0.0763408541679382 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15008941 chr4:15008952 stopgain 1.000 1 32 hm5C_associated_SNPs_29360 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392108 1 0.99953671215784 hm5C_site_29620 DeepMRMD:1;iRNA_m5C:0.99953671215784 29621 chr17 78079644 78079644 1 + G A LUSC 78079642 + 78079622 78079662 41 ACTCTACAGCGTGGAGTTCTCCGAGGAGCCCTTCGGGGTGA ACTCTACAGCGTGGAGTTCTCCAAGGAGCCCTTCGGGGTGA < 41bp 1 0.694855910018285 1 0.790667831897736 experiment 0.61028817996343 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GAA ENSG00000171298 CDS Human protein_coding chr17:78079642 chr17:78079644 nonsynonymous SNV 0.887 1 23 hm5C_associated_SNPs_29361 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643436096 0.418664336204528 0.999536713127808 hm5C_site_29621 DeepMRMD:0.418664336204528;iRNA_m5C:0.999536713127808 29622 chr8 22473311 22473311 1 + A T LUSC 22473327 + 22473307 22473347 41 TCCCAGAGGCCCCTCCACCCCCCCTAGAACCTGCTGTCATC TCCCTGAGGCCCCTCCACCCCCCCTAGAACCTGCTGTCATC < 41bp 1 0.256520288499426 1 0.393862426280975 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22473327 chr8:22473311 synonymous SNV . 0 5 hm5C_associated_SNPs_29362 0 0 1 0 0 Nucleus 1 0.50023164392113 1 0.99953671215774 hm5C_site_29622 DeepMRMD:1;iRNA_m5C:0.99953671215774 29623 chr3 138119380 138119380 1 + C T LUSC 138119379 + 138119359 138119399 41 TGAGCTTTGCCTTCCAGATTCCGTACATAGAAACCAGTGCC TGAGCTTTGCCTTCCAGATTCTGTACATAGAAACCAGTGCC < 41bp 1 0.444172164891516 1 0.476340740919113 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRAS ENSG00000158186 CDS Human protein_coding chr3:138119379 chr3:138119380 nonsynonymous SNV 0.990 1 22 hm5C_associated_SNPs_29363 0 0 0 0 2 Cytosol 1 0.500231643977754 1 0.999536712044492 hm5C_site_29623 DeepMRMD:1;iRNA_m5C:0.999536712044492 29624 chr2 170471233 170471233 1 + A C LUSC 170471216 + 170471196 170471236 41 GGATACTCAGTTGTGGAGAGCTGATTCCCAAATCTAAAGGT GGATACTCAGTTGTGGAGAGCTGATTCCCAAATCTAACGGT < 41bp 1 0.382987943879068 1 0.124880731105804 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIG ENSG00000138398 CDS Human protein_coding chr2:170471216 chr2:170471233 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_29364 0 0 1 0 1 Cytosol 1 0.500231642761412 1 0.999536714477177 hm5C_site_29624 DeepMRMD:1;iRNA_m5C:0.999536714477177 29625 chr19 10823291 10823291 1 + C T LUSC 10823292 + 10823272 10823312 41 ATGTTCGACTGCGTCTTCCCCACACGGACAGCGGTGAGGCT ATGTTCGACTGCGTCTTCCTCACACGGACAGCGGTGAGGCT < 41bp 1 0.301784510056911 1 0.232902526855469 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10823292 chr19:10823291 nonsynonymous SNV 0.913 3 20 hm5C_associated_SNPs_29365 0 0 1 0 2 Ribosome 1 0.50023164386277 1 0.99953671227446 hm5C_site_29625 DeepMRMD:1;iRNA_m5C:0.99953671227446 29626 chr2 54858661 54858661 1 + G A LUSC 54858649 + 54858629 54858669 41 ACTGGATGGAACGAGCTCCACAAGATGTGGGAGAACAGACA ACTGGATGGAACGAGCTCCACAAGATGTGGGAAAACAGACA < 41bp 1 0.652574668522958 1 0.636572003364563 experiment 0.694850662954084 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858649 chr2:54858661 synonymous SNV . 0 33 hm5C_associated_SNPs_29366 0 0 1 0 1 Nucleus 1 0.500231275038024 0.726855993270874 0.999537449923953 hm5C_site_29626 DeepMRMD:0.726855993270874;iRNA_m5C:0.999537449923953 29627 chr2 54858661 54858661 1 + G A LUSC 54858664 + 54858644 54858684 41 CTCCACAAGATGTGGGAGAACAGACAAAATCTCCTATCCCA CTCCACAAGATGTGGGAAAACAGACAAAATCTCCTATCCCA < 41bp 1 0.382028071836431 1 0.571363568305969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858664 chr2:54858661 synonymous SNV . 0 18 hm5C_associated_SNPs_29367 0 0 1 0 1 Nucleus 1 0.500231643921092 0.857272863388062 0.999536712157816 hm5C_site_29627 DeepMRMD:0.857272863388062;iRNA_m5C:0.999536712157816 29628 chr5 154169899 154169899 1 + G A LUSC 154169887 + 154169867 154169907 41 CCCTTCTTGTTCCCACAGAACACTCTGCTCCAGCCAAGGTG CCCTTCTTGTTCCCACAGAACACTCTGCTCCAACCAAGGTG < 41bp 1 0.160417067271115 1 0.0468122065067291 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154169887 chr5:154169899 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_29368 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29628 DeepMRMD:1;iRNA_m5C:0.999536712157815 29629 chr10 118314758 118314758 1 + A T LUSC 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCGATTGGACCCCAGCGATGCCTAATTTGT < 41bp 1 0.573882797584174 1 0.10907319188118 experiment 0.852234404831652 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314758 stopgain 0.978 0 34 hm5C_associated_SNPs_29369 0 0 0 0 1 unknown 1 0.500231520148875 1 0.99953695970225 hm5C_site_29629 DeepMRMD:1;iRNA_m5C:0.99953695970225 29630 chr10 118314758 118314758 1 + A T LUSC 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCGATTGGACCCCAGCGATGCCTAATTTGTG < 41bp 1 0.172925573986854 1 0.107270181179047 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314758 stopgain 0.978 0 33 hm5C_associated_SNPs_29370 0 0 0 0 1 unknown 1 0.500231651021865 1 0.999536697956269 hm5C_site_29630 DeepMRMD:1;iRNA_m5C:0.999536697956269 29631 chr10 118314758 118314758 1 + A T LUSC 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCGATTGGACCCCAGCGATGCCTAATTTGTGG < 41bp 1 0.329525312201879 1 0.346471190452576 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314758 stopgain 0.978 0 32 hm5C_associated_SNPs_29371 0 0 0 0 1 unknown 1 0.500231643921089 1 0.999536712157821 hm5C_site_29631 DeepMRMD:1;iRNA_m5C:0.999536712157821 29632 chr10 118314758 118314758 1 + A T LUSC 118314748 + 118314728 118314768 41 GAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGA GAATTAGTCCGATTGGACCCCAGCGATGCCTAATTTGTGGA < 41bp 1 0.637286032263192 1 0.35175496339798 experiment 0.725427935473616 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314748 chr10:118314758 stopgain 0.978 0 31 hm5C_associated_SNPs_29372 0 0 0 0 1 unknown 1 0.5002335085943 1 0.999532982811399 hm5C_site_29632 DeepMRMD:1;iRNA_m5C:0.999532982811399 29633 chr10 118314758 118314758 1 + A T LUSC 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCGATTGGACCCCAGCGATGCCTAATTTGTGGATGT < 41bp 1 0.294180418210421 1 0.140796333551407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314758 stopgain 0.978 0 28 hm5C_associated_SNPs_29373 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29633 DeepMRMD:1;iRNA_m5C:0.999536712157815 29634 chr10 118314758 118314758 1 + A T LUSC 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCGATTGGACCCCAGCGATGCCTAATTTGTGGATGTAATTC < 41bp 1 0.181062009463571 1 0.0283975601196289 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314758 stopgain 0.978 0 23 hm5C_associated_SNPs_29374 0 0 0 0 1 unknown 1 0.500231643920366 1 0.999536712159268 hm5C_site_29634 DeepMRMD:1;iRNA_m5C:0.999536712159268 29635 chr10 118314758 118314758 1 + A T LUSC 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CGATTGGACCCCAGCGATGCCTAATTTGTGGATGTAATTCA < 41bp 1 0.386246798650815 1 0.072918564081192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314758 stopgain 0.978 0 22 hm5C_associated_SNPs_29375 0 0 0 0 1 unknown 1 0.500231643921195 1 0.99953671215761 hm5C_site_29635 DeepMRMD:1;iRNA_m5C:0.99953671215761 29636 chr10 118314758 118314758 1 + A T LUSC 118314776 + 118314756 118314796 41 CCAAATTTGTGGATGTAATTCACACGGATGGTGCCCCCATA CCTAATTTGTGGATGTAATTCACACGGATGGTGCCCCCATA < 41bp 1 0.687128051416977 1 0.142698019742966 experiment 0.625743897166046 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314776 chr10:118314758 stopgain 0.978 0 3 hm5C_associated_SNPs_29376 0 0 0 0 1 unknown 1 0.500231643920835 1 0.99953671215833 hm5C_site_29636 DeepMRMD:1;iRNA_m5C:0.99953671215833 29637 chr8 77619806 77619806 1 + C A LUSC 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TACGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC < 41bp 1 0.181842166217076 1 0.500535845756531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619806 synonymous SNV . 0 2 hm5C_associated_SNPs_29377 0 0 1 0 1 Ribosome 1 0.500231643921092 0.998928308486938 0.999536712157815 hm5C_site_29637 DeepMRMD:0.998928308486938;iRNA_m5C:0.999536712157815 29638 chr2 27440793 27440793 1 + C T LUSC 27440789 + 27440769 27440809 41 ACCCCGAGGCCCTCACCGATCCCTCCTACAAGGCACAGATC ACCCCGAGGCCCTCACCGATCCCTTCTACAAGGCACAGATC < 41bp 1 0.0601781625925516 1 0.0549103617668152 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27440789 chr2:27440793 nonsynonymous SNV 0.984 5 25 hm5C_associated_SNPs_29378 0 0 1 0 1 Exosome 1 0.500241649278868 1 0.999516701442265 hm5C_site_29638 DeepMRMD:1;iRNA_m5C:0.999516701442265 29639 chr4 8294050 8294050 1 + C A LUSC 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTAAGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG < 41bp 1 0.374037229437003 1 0.353901028633118 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294050 stopgain 0.972 1 4 hm5C_associated_SNPs_29379 0 0 0 0 2 exosome 1 0.500304318767654 1 0.999391362464692 hm5C_site_29639 DeepMRMD:1;iRNA_m5C:0.999391362464692 29640 chrX 73042695 73042695 1 + C T LUSC 73042691 - 73042671 73042711 41 TAGCTGTGATATGTTCGATACTAAGGAAAAACTAAACAGAT TAGCTGTGATATGTTCAATACTAAGGAAAAACTAAACAGAT < 41bp 1 0.181750025073865 1 0.552383601665497 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042691 chrX:73042695 . . 0 17 hm5C_associated_SNPs_29380 0 0 1 0 0 unknown 1 0.500231650079594 0.895232796669006 0.999536699840812 hm5C_site_29640 DeepMRMD:0.895232796669006;iRNA_m5C:0.999536699840812 29641 chr8 99168342 99168342 1 + T A LUSC 99168348 + 99168328 99168368 41 CTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAG CTTTCTGCTGTCCCAGGGAGCAGTTAACTCAAGACTGGGAG < 41bp 1 0.205571145846391 1 0.430422961711884 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POP1 ENSG00000104356 CDS Human protein_coding chr8:99168348 chr8:99168342 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_29381 0 0 1 0 1 Mitochondrion 1 0.500231643921092 1 0.999536712157815 hm5C_site_29641 DeepMRMD:1;iRNA_m5C:0.999536712157815 29642 chrX 73045732 73045732 1 + A C LUSC 73045745 - 73045725 73045765 41 GAGAACCTGGGACTGTTGAGCATGTTTAATACTTTCCTTGA GAGAACCTGGGACTGTTGAGCATGTTTAATACTGTCCTTGA < 41bp 1 0.143826887793987 1 0.473824560642242 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045745 chrX:73045732 . . 0 34 hm5C_associated_SNPs_29382 0 0 1 1 0 unknown 1 0.500231658450846 1 0.999536683098307 hm5C_site_29642 DeepMRMD:1;iRNA_m5C:0.999536683098307 29643 chr20 30115371 30115371 1 + T A LUSC 30115370 + 30115350 30115390 41 AGCTGCACACTCTTGGGGCTCTACCTCTTTTTCAAAGTAAG AGCTGCACACTCTTGGGGCTCAACCTCTTTTTCAAAGTAAG < 41bp 1 0.100060388286922 1 0.142320781946182 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HM13 ENSG00000101294 CDS Human protein_coding chr20:30115370 chr20:30115371 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_29384 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29643 DeepMRMD:1;iRNA_m5C:0.999536712157815 29644 chr10 121677437 121677437 1 + C T LUSC 121677432 + 121677412 121677452 41 CTAGATATTTTATTTTATAACAGCCCCACCTACTGTCAGAC CTAGATATTTTATTTTATAACAGCCTCACCTACTGTCAGAC < 41bp 1 0.282951475555658 1 0.121571063995361 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121677432 chr10:121677437 nonsynonymous SNV 0.992 4 26 hm5C_associated_SNPs_29385 0 0 1 0 1 Nucleus 1 0.500231643981966 1 0.999536712036067 hm5C_site_29644 DeepMRMD:1;iRNA_m5C:0.999536712036067 29645 chr14 24617669 24617669 1 + G T LUSC 24617684 + 24617664 24617704 41 CTGGGGAGCCCAGCCTAACTCAAGTAAGTTTGAGGACCCCC CTGGGTAGCCCAGCCTAACTCAAGTAAGTTTGAGGACCCCC < 41bp 1 0.382619030048725 1 0.476999461650848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF31 ENSG00000092098 CDS Human protein_coding chr14:24617684 chr14:24617669 stopgain 0.016 0 6 hm5C_associated_SNPs_29386 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29645 DeepMRMD:1;iRNA_m5C:0.999536712157815 29646 chr6 30856996 30856996 1 + G T LUSC 30857005 + 30856985 30857025 41 GAGCAGTGACGGGGATGGGGCCTGGTGCCCCGCAGGGTCGG GAGCAGTGACGTGGATGGGGCCTGGTGCCCCGCAGGGTCGG < 41bp 1 0.25636101363635 1 0.217724978923798 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30857005 chr6:30856996 nonsynonymous SNV 0.996 4 12 hm5C_associated_SNPs_29387 0 0 1 0 1 Ribosome 1 0.500231645178467 1 0.999536709643065 hm5C_site_29646 DeepMRMD:1;iRNA_m5C:0.999536709643065 29647 chr9 130569530 130569530 1 + A G LUSC 130569510 + 130569490 130569530 41 TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGG < 41bp 1 0.0930896073483465 1 0.0605399906635284 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130569510 chr9:130569530 nonsynonymous SNV 0.987 3 41 hm5C_associated_SNPs_29389 0 0 0 0 2 Cytosol 1 0.500231643954047 1 0.999536712091907 hm5C_site_29647 DeepMRMD:1;iRNA_m5C:0.999536712091907 29648 chr5 128440953 128440953 1 + C G LUSC 128440946 + 128440926 128440966 41 TACCCTAAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT TACCCTAAAGGTCTTGGGAGCACGGTTGAAGAAATTGATTT < 41bp 1 0.651608802107684 1 0.480006754398346 experiment 0.696782395784633 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440946 chr5:128440953 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_29390 0 0 1 0 1 Ribosome 1 0.500231643921087 1 0.999536712157826 hm5C_site_29648 DeepMRMD:1;iRNA_m5C:0.999536712157826 29649 chr12 56214138 56214138 1 + C G LUSC 56214120 + 56214100 56214140 41 CAGCCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAG CAGCCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCGAG < 41bp 1 0.66523396083598 1 0.218686074018478 experiment 0.669532078328041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human other chr12:56214120 chr12:56214138 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_29391 0 0 1 0 1 Ribosome 1 0.500231651673583 1 0.999536696652835 hm5C_site_29649 DeepMRMD:1;iRNA_m5C:0.999536696652835 29650 chr12 56214138 56214138 1 + C G LUSC 56214123 + 56214103 56214143 41 CCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAGTTC CCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCGAGTTC < 41bp 1 0.577577894422615 1 0.379956960678101 experiment 0.844844211154769 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human other chr12:56214123 chr12:56214138 nonsynonymous SNV 0.997 1 36 hm5C_associated_SNPs_29392 0 0 1 0 1 Ribosome 1 0.500231643916739 1 0.999536712166522 hm5C_site_29650 DeepMRMD:1;iRNA_m5C:0.999536712166522 29651 chr18 19209068 19209068 1 + G A LUSC 19209061 + 19209041 19209081 41 GAAGAGGAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGA GAAGAGGAAGAGGAAGAGGACGTGGCCATGGCAGAGGAAGA < 41bp 1 0.584758855772229 1 0.488729447126389 experiment 0.830482288455542 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209061 chr18:19209068 nonsynonymous SNV 0.998 4 28 hm5C_associated_SNPs_29393 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_29651 DeepMRMD:1;iRNA_m5C:0.999536712157815 29652 chr18 19209068 19209068 1 + G A LUSC 19209067 + 19209047 19209087 41 GAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGAGGGGGT GAAGAGGAAGAGGACGTGGCCATGGCAGAGGAAGAGGGGGT < 41bp 1 0.673725773370057 1 0.220461755990982 experiment 0.652548453259885 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209067 chr18:19209068 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_29394 0 0 1 0 1 Ribosome 1 0.500231643920945 1 0.999536712158109 hm5C_site_29652 DeepMRMD:1;iRNA_m5C:0.999536712158109 29653 chr14 64676719 64676719 1 + C T LUSC 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTATCGGCGGCTGGCCCGGGAGAACCGCACAGACACG < 41bp 1 0.611473640948953 1 0.937340021133423 experiment 0.777052718102095 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676719 synonymous SNV . 0 8 hm5C_associated_SNPs_29395 0 0 0 0 2 Nucleus 1 0.500231651978912 0.125319957733154 0.999536696042176 hm5C_site_29653 DeepMRMD:0.125319957733154;iRNA_m5C:0.999536696042176 29654 chr6 26093173 26093173 1 + C T LUSC 26093171 + 26093151 26093191 41 GCACCCAGGCCTGGATCAGCCCCTCATTGTGATCTGGGGTA GCACCCAGGCCTGGATCAGCCCTTCATTGTGATCTGGGGTA < 41bp 1 0.0687659062218548 1 0.0623259544372559 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26093171 chr6:26093173 nonsynonymous SNV 0.138 3 23 hm5C_associated_SNPs_29396 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643105874 1 0.999536713788251 hm5C_site_29654 DeepMRMD:1;iRNA_m5C:0.999536713788251 29655 chr7 142460742 142460742 1 + C A LUSC 142460726 + 142460706 142460746 41 TTCTTCCCCCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCA TTCTTCCCCCCAGGGTGATTCTGGTGGCCCTGTGGTATGCA < 41bp 1 0.552794675345266 1 0.554235517978668 experiment 0.894410649309469 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460726 chr7:142460742 synonymous SNV . 0 37 hm5C_associated_SNPs_29397 0 0 0 0 0 Cytosol 1 0.500231643923561 0.891528964042664 0.999536712152879 hm5C_site_29655 DeepMRMD:0.891528964042664;iRNA_m5C:0.999536712152879 29656 chr7 142460742 142460742 1 + C A LUSC 142460733 + 142460713 142460753 41 CCCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACA CCCCAGGGTGATTCTGGTGGCCCTGTGGTATGCAATGGACA < 41bp 1 0.0940807893953405 1 0.0803681612014771 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460733 chr7:142460742 synonymous SNV . 0 30 hm5C_associated_SNPs_29398 0 0 0 0 0 Cytosol 1 0.500231650709842 1 0.999536698580316 hm5C_site_29656 DeepMRMD:1;iRNA_m5C:0.999536698580316 29657 chr7 142460742 142460742 1 + C A LUSC 142460734 + 142460714 142460754 41 CCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAG CCCAGGGTGATTCTGGTGGCCCTGTGGTATGCAATGGACAG < 41bp 1 0.110199650891482 1 0.106782466173172 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460734 chr7:142460742 synonymous SNV . 0 29 hm5C_associated_SNPs_29399 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29657 DeepMRMD:1;iRNA_m5C:0.999536712157815 29658 chr7 142460742 142460742 1 + C A LUSC 142460735 + 142460715 142460755 41 CCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGC CCAGGGTGATTCTGGTGGCCCTGTGGTATGCAATGGACAGC < 41bp 1 0.429986810166392 1 0.165129989385605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460735 chr7:142460742 synonymous SNV . 0 28 hm5C_associated_SNPs_29400 0 0 0 0 0 Cytosol 1 0.500228213613164 1 0.999543572773671 hm5C_site_29658 DeepMRMD:1;iRNA_m5C:0.999543572773671 29659 chr7 142460742 142460742 1 + C A LUSC 142460745 + 142460725 142460765 41 TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGT TCTGGTGGCCCTGTGGTATGCAATGGACAGCTCCAAGGAGT < 41bp 1 0.535271765643375 1 0.0849325656890869 experiment 0.92945646871325 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460745 chr7:142460742 synonymous SNV . 0 18 hm5C_associated_SNPs_29401 0 0 0 0 0 Cytosol 1 0.50023164394768 1 0.99953671210464 hm5C_site_29659 DeepMRMD:1;iRNA_m5C:0.99953671210464 29660 chr7 142460742 142460742 1 + C A LUSC 142460757 + 142460737 142460777 41 GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG GTGGTATGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG < 41bp 1 0.323502915389162 1 0.722709774971008 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460757 chr7:142460742 synonymous SNV . 0 6 hm5C_associated_SNPs_29402 0 0 0 0 0 Cytosol 1 0.500228337562279 0.554580450057984 0.999543324875441 hm5C_site_29660 DeepMRMD:0.554580450057984;iRNA_m5C:0.999543324875441 29661 chr7 142460742 142460742 1 + C A LUSC 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTATGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT < 41bp 1 0.487447329781062 1 0.434644460678101 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460742 synonymous SNV . 0 5 hm5C_associated_SNPs_29403 0 0 0 0 0 Cytosol 1 0.5002316439473 1 0.999536712105401 hm5C_site_29661 DeepMRMD:1;iRNA_m5C:0.999536712105401 29662 chr19 42796597 42796597 1 + T G LUSC 42796582 + 42796562 42796602 41 TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTG TAGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCGTCGTG < 41bp 1 0.0667687728869934 1 0.139636129140854 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796582 chr19:42796597 nonsynonymous SNV 0.961 2 36 hm5C_associated_SNPs_29404 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29662 DeepMRMD:1;iRNA_m5C:0.999536712157815 29663 chr19 42796597 42796597 1 + T G LUSC 42796583 + 42796563 42796603 41 AGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGC AGGCTTCACCTCGCTGGGGCCCAGCGGCCCCGCCGTCGTGC < 41bp 1 0.154327542355276 1 0.276813805103302 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796583 chr19:42796597 nonsynonymous SNV 0.961 2 35 hm5C_associated_SNPs_29405 0 0 0 0 1 Cytosol 1 0.500231643942287 1 0.999536712115425 hm5C_site_29663 DeepMRMD:1;iRNA_m5C:0.999536712115425 29664 chr19 42796597 42796597 1 + T G LUSC 42796590 + 42796570 42796610 41 ACCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCT ACCTCGCTGGGGCCCAGCGGCCCCGCCGTCGTGCAGCCCCT < 41bp 1 0.192735971436652 1 0.151917964220047 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796590 chr19:42796597 nonsynonymous SNV 0.961 2 28 hm5C_associated_SNPs_29406 0 0 0 0 1 Cytosol 1 0.50023164392072 1 0.999536712158561 hm5C_site_29664 DeepMRMD:1;iRNA_m5C:0.999536712158561 29665 chr19 42796597 42796597 1 + T G LUSC 42796591 + 42796571 42796611 41 CCTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTG CCTCGCTGGGGCCCAGCGGCCCCGCCGTCGTGCAGCCCCTG < 41bp 1 0.190121717370178 1 0.0673854053020477 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796591 chr19:42796597 nonsynonymous SNV 0.961 2 27 hm5C_associated_SNPs_29407 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_29665 DeepMRMD:1;iRNA_m5C:0.999536712157817 29666 chr19 42796597 42796597 1 + T G LUSC 42796592 + 42796572 42796612 41 CTCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGC CTCGCTGGGGCCCAGCGGCCCCGCCGTCGTGCAGCCCCTGC < 41bp 1 0.185349993379686 1 0.144144743680954 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796592 chr19:42796597 nonsynonymous SNV 0.961 2 26 hm5C_associated_SNPs_29408 0 0 0 0 1 Cytosol 1 0.500231643886223 1 0.999536712227553 hm5C_site_29666 DeepMRMD:1;iRNA_m5C:0.999536712227553 29667 chr19 42796597 42796597 1 + T G LUSC 42796593 + 42796573 42796613 41 TCGCTGGGGCCCAGCGGCCCCGCCTTCGTGCAGCCCCTGCT TCGCTGGGGCCCAGCGGCCCCGCCGTCGTGCAGCCCCTGCT < 41bp 1 0.539332298596778 1 0.425494194030762 experiment 0.921335402806444 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CIC ENSG00000079432 CDS Human protein_coding chr19:42796593 chr19:42796597 nonsynonymous SNV 0.961 2 25 hm5C_associated_SNPs_29409 0 0 0 0 1 Cytosol 1 0.500231643928827 1 0.999536712142347 hm5C_site_29667 DeepMRMD:1;iRNA_m5C:0.999536712142347 29668 chr5 174156559 174156559 1 + G T LUSC 174156550 + 174156530 174156570 41 CCGCCTGTGGGACTCTATGCCACGCCAGTGGGATATGGCAT CCGCCTGTGGGACTCTATGCCACGCCAGTTGGATATGGCAT < 41bp 1 0.478618599349737 1 0.420070469379425 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSX2 ENSG00000120149 CDS Human protein_coding chr5:174156550 chr5:174156559 synonymous SNV . 0 30 hm5C_associated_SNPs_29410 0 0 0 0 0 exosome 1 0.500231627336205 1 0.99953674532759 hm5C_site_29668 DeepMRMD:1;iRNA_m5C:0.99953674532759 29669 chr2 99162464 99162464 1 + G C LUSC 99162451 + 99162431 99162471 41 GGGCCCTCGTTTAAAGCAAGCAGTTTGAAAGCAGATAAAAA GGGCCCTCGTTTAAAGCAAGCAGTTTGAAAGCACATAAAAA < 41bp 1 0.046872087977702 1 0.134787946939468 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99162451 chr2:99162464 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_29411 0 0 0 0 2 Ribosome 1 0.500231643929502 1 0.999536712140997 hm5C_site_29669 DeepMRMD:1;iRNA_m5C:0.999536712140997 29670 chr7 73944165 73944165 1 + T C LUSC 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATCCCCCTCAAGCGCCCCTGCACTT < 41bp 1 0.071055791235889 1 0.197008967399597 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944165 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_29412 0 0 1 0 1 Nucleus 1 0.500231643922119 1 0.999536712155761 hm5C_site_29670 DeepMRMD:1;iRNA_m5C:0.999536712155761 29671 chr9 132863443 132863443 1 + A C LUSC 132863429 + 132863409 132863449 41 CACCATTGCACTCATTGGCACTGGCTGGGCTTTCATTAAGC CACCATTGCACTCATTGGCACTGGCTGGGCTTTCCTTAAGC < 41bp 1 0.235802269197172 1 0.738452732563019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPR107 ENSG00000148358 CDS Human protein_coding chr9:132863429 chr9:132863443 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_29413 0 0 1 1 2 Ribosome 1 0.500231644550835 0.523094534873962 0.99953671089833 hm5C_site_29671 DeepMRMD:0.523094534873962;iRNA_m5C:0.99953671089833 29672 chr2 71780251 71780251 1 + G T LUSC 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGTAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA < 41bp 1 0.149251215589874 1 0.013826459646225 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780251 synonymous SNV . 0 4 hm5C_associated_SNPs_29414 0 0 0 0 1 Nucleus 1 0.500231643921095 1 0.999536712157811 hm5C_site_29672 DeepMRMD:1;iRNA_m5C:0.999536712157811 29673 chr19 10748940 10748940 1 + G T LUSC 10748954 + 10748934 10748974 41 TATCAGGATCGTGCAGGATACAGCACCACCCCTCAATTATT TATCAGTATCGTGCAGGATACAGCACCACCCCTCAATTATT < 41bp 1 0.514341355688163 1 0.0883971452713013 experiment 0.971317288623673 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10748954 chr19:10748940 nonsynonymous SNV 0.961 1 7 hm5C_associated_SNPs_29415 0 0 1 0 2 Ribosome 1 0.500231643910988 1 0.999536712178025 hm5C_site_29673 DeepMRMD:1;iRNA_m5C:0.999536712178025 29674 chr6 52943674 52943674 1 + G T LUSC 52943668 + 52943648 52943688 41 AGATTACTTATACCCGGTCTCCAGATGGTGATGGCGTTGGA AGATTACTTATACCCGGTCTCCAGATTGTGATGGCGTTGGA < 41bp 1 0.650996551379416 1 0.644495010375977 experiment 0.698006897241169 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943668 chr6:52943674 nonsynonymous SNV 0.997 2 27 hm5C_associated_SNPs_29416 0 0 1 0 2 Cytosol 1 0.500238848490031 0.711009979248046 0.999522303019939 hm5C_site_29674 DeepMRMD:0.711009979248046;iRNA_m5C:0.999522303019939 29675 chrX 131202531 131202531 1 + T C LUSC 131202534 + 131202514 131202554 41 ACACAGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG ACACAGATTAAAAGAAACACCTTTGTGGGAACTCCATTTTG < 41bp 1 0.286779932879144 1 0.0427736937999725 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK26 ENSG00000134602 CDS Human protein_coding chrX:131202534 chrX:131202531 synonymous SNV . 0 18 hm5C_associated_SNPs_29417 0 0 1 0 2 Ribosome 1 0.500231643906194 1 0.999536712187612 hm5C_site_29675 DeepMRMD:1;iRNA_m5C:0.999536712187612 29676 chr20 46264268 46264268 1 + A G LUSC 46264260 + 46264240 46264280 41 TGGAGCTAGGTATGGGGGTTCCAGTAACATAGCTTCATTGA TGGAGCTAGGTATGGGGGTTCCAGTAACGTAGCTTCATTGA < 41bp 1 0.29357382897687 1 0.15460479259491 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46264260 chr20:46264268 nonsynonymous SNV 0.063 0 29 hm5C_associated_SNPs_29418 0 0 0 0 0 Ribosome 1 0.50023164392091 1 0.999536712158179 hm5C_site_29676 DeepMRMD:1;iRNA_m5C:0.999536712158179 29677 chr17 78201679 78201679 1 + G A LUSC 78201694 + 78201674 78201714 41 GATGCGGGACCACGTGCCTCCCGTCCACCCCGAGATGCCCC GATGCAGGACCACGTGCCTCCCGTCCACCCCGAGATGCCCC < 41bp 1 0.102511752206842 1 0.640882730484009 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78201694 chr17:78201679 nonsynonymous SNV 0.707 1 6 hm5C_associated_SNPs_29419 0 0 1 0 1 chromatin 1 0.500231643950727 0.718234539031982 0.999536712098547 hm5C_site_29677 DeepMRMD:0.718234539031982;iRNA_m5C:0.999536712098547 29678 chr11 122817427 122817427 1 + G C LUSC 122817446 + 122817426 122817466 41 AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA ACCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA < 41bp 1 0.10806634780609 1 0.0574584007263184 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817446 chr11:122817427 nonsynonymous SNV 0.029 0 2 hm5C_associated_SNPs_29420 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_29678 DeepMRMD:1;iRNA_m5C:0.999536712157816 29679 chr19 21300989 21300989 1 + G T LUSC 21300990 + 21300970 21301010 41 AATTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACA AATTCAGCAGGGCATGGTGTCTCATGCCTGTAATCCCAACA < 41bp 1 0.447813300835274 1 0.181733787059784 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300990 chr19:21300989 nonsynonymous SNV 0.039 0 20 hm5C_associated_SNPs_29421 0 0 0 0 0 Cytosol 1 0.500231643134655 1 0.99953671373069 hm5C_site_29679 DeepMRMD:1;iRNA_m5C:0.99953671373069 29680 chr19 21300989 21300989 1 + G T LUSC 21300992 + 21300972 21301012 41 TTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT TTCAGCAGGGCATGGTGTCTCATGCCTGTAATCCCAACACT < 41bp 1 0.352727968672049 1 0.213886350393295 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300992 chr19:21300989 nonsynonymous SNV 0.039 0 18 hm5C_associated_SNPs_29422 0 0 0 0 0 Cytosol 1 0.500233998760438 1 0.999532002479124 hm5C_site_29680 DeepMRMD:1;iRNA_m5C:0.999532002479124 29681 chr19 21300989 21300989 1 + G T LUSC 21300996 + 21300976 21301016 41 GCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGA GCAGGGCATGGTGTCTCATGCCTGTAATCCCAACACTTTGA < 41bp 1 0.141936276984077 1 0.0626890361309052 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300996 chr19:21300989 nonsynonymous SNV 0.039 0 14 hm5C_associated_SNPs_29423 0 0 0 0 0 Cytosol 1 0.500231682533666 1 0.999536634932669 hm5C_site_29681 DeepMRMD:1;iRNA_m5C:0.999536634932669 29682 chr19 21300989 21300989 1 + G T LUSC 21300997 + 21300977 21301017 41 CAGGGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGAG CAGGGCATGGTGTCTCATGCCTGTAATCCCAACACTTTGAG < 41bp 1 0.540591857859031 1 0.0992422103881836 experiment 0.918816284281939 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300997 chr19:21300989 nonsynonymous SNV 0.039 0 13 hm5C_associated_SNPs_29424 0 0 0 0 0 Cytosol 1 0.500225090747206 1 0.999549818505588 hm5C_site_29682 DeepMRMD:1;iRNA_m5C:0.999549818505588 29683 chr19 21300989 21300989 1 + G T LUSC 21301004 + 21300984 21301024 41 TGGTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTA TGGTGTCTCATGCCTGTAATCCCAACACTTTGAGAGGACTA < 41bp 1 0.425590341544858 1 0.208147436380386 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301004 chr19:21300989 nonsynonymous SNV 0.039 0 6 hm5C_associated_SNPs_29425 0 0 0 0 0 Cytosol 1 0.500231643508009 1 0.999536712983982 hm5C_site_29683 DeepMRMD:1;iRNA_m5C:0.999536712983982 29684 chr19 21300989 21300989 1 + G T LUSC 21301005 + 21300985 21301025 41 GGTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTAG GGTGTCTCATGCCTGTAATCCCAACACTTTGAGAGGACTAG < 41bp 1 0.0557007280689433 1 0.176962524652481 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301005 chr19:21300989 nonsynonymous SNV 0.039 0 5 hm5C_associated_SNPs_29426 0 0 0 0 0 Cytosol 1 0.500236676041293 1 0.999526647917414 hm5C_site_29684 DeepMRMD:1;iRNA_m5C:0.999526647917414 29685 chr19 21300989 21300989 1 + G T LUSC 21301006 + 21300986 21301026 41 GTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTAGG GTGTCTCATGCCTGTAATCCCAACACTTTGAGAGGACTAGG < 41bp 1 0.64223499905524 1 0.30210143327713 experiment 0.71553000188952 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301006 chr19:21300989 nonsynonymous SNV 0.039 0 4 hm5C_associated_SNPs_29427 0 0 0 0 0 Cytosol 1 0.500231018116445 1 0.99953796376711 hm5C_site_29685 DeepMRMD:1;iRNA_m5C:0.99953796376711 29686 chr9 116971987 116971987 1 + G T LUSC 116971985 + 116971965 116972005 41 GGCTCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAA GGCTCCCAGGGCTCTTCGGCCTTCCAGGGTCTGATGGAGAA < 41bp 1 0.0362381600158954 1 0.0809206366539001 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971985 chr9:116971987 synonymous SNV . 0 23 hm5C_associated_SNPs_29428 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29686 DeepMRMD:1;iRNA_m5C:0.999536712157815 29687 chr9 116971987 116971987 1 + G T LUSC 116971988 + 116971968 116972008 41 TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGA TCCCAGGGCTCTTCGGCCTTCCAGGGTCTGATGGAGAACGA < 41bp 1 0.209130080688305 1 0.885968863964081 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971988 chr9:116971987 synonymous SNV . 0 20 hm5C_associated_SNPs_29429 0 0 1 0 2 Nucleus 1 0.500223957102366 0.228062272071838 0.999552085795268 hm5C_site_29687 DeepMRMD:0.228062272071838;iRNA_m5C:0.999552085795268 29688 chr9 116971987 116971987 1 + G T LUSC 116971989 + 116971969 116972009 41 CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGAG CCCAGGGCTCTTCGGCCTTCCAGGGTCTGATGGAGAACGAG < 41bp 1 0.367734494269889 1 0.884087204933167 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971989 chr9:116971987 synonymous SNV . 0 19 hm5C_associated_SNPs_29430 0 0 1 0 2 Nucleus 1 0.500231643921092 0.231825590133666 0.999536712157815 hm5C_site_29688 DeepMRMD:0.231825590133666;iRNA_m5C:0.999536712157815 29689 chr1 112999476 112999476 1 + G A LUSC 112999456 + 112999436 112999476 41 CAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGG CAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGA < 41bp 1 0.153330793866055 1 0.536887228488922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999456 chr1:112999476 synonymous SNV . 0 41 hm5C_associated_SNPs_29431 0 0 0 1 0 Ribosome 1 0.500231643921092 0.926225543022156 0.999536712157815 hm5C_site_29689 DeepMRMD:0.926225543022156;iRNA_m5C:0.999536712157815 29690 chr1 112999476 112999476 1 + G A LUSC 112999460 + 112999440 112999480 41 TAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGGATCA TAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGAATCA < 41bp 1 0.378676301216783 1 0.0406734645366669 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999460 chr1:112999476 synonymous SNV . 0 37 hm5C_associated_SNPs_29432 0 0 0 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29690 DeepMRMD:1;iRNA_m5C:0.999536712157815 29691 chr1 112999476 112999476 1 + G A LUSC 112999467 + 112999447 112999487 41 CCTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACG CCTGGCTACCAGTCATCGTACCAAGTAGGAATCAACCAACG < 41bp 1 0.281300620771559 1 0.432419538497925 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999467 chr1:112999476 synonymous SNV . 0 30 hm5C_associated_SNPs_29433 0 0 0 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29691 DeepMRMD:1;iRNA_m5C:0.999536712157815 29692 chr1 112999476 112999476 1 + G A LUSC 112999468 + 112999448 112999488 41 CTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACGG CTGGCTACCAGTCATCGTACCAAGTAGGAATCAACCAACGG < 41bp 1 0.400299583227705 1 0.241982340812683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999468 chr1:112999476 synonymous SNV . 0 29 hm5C_associated_SNPs_29434 0 0 0 1 0 Ribosome 1 0.500231643932013 1 0.999536712135973 hm5C_site_29692 DeepMRMD:1;iRNA_m5C:0.999536712135973 29693 chr5 176721115 176721115 1 + A T LUSC 176721103 + 176721083 176721123 41 GCAATCAACAGGAATGGCTGCTCAGGCACCCAAAATGTCAG GCAATCAACAGGAATGGCTGCTCAGGCACCCATAATGTCAG < 41bp 1 0.199905787198926 1 0.0969629287719727 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176721103 chr5:176721115 nonsynonymous SNV 0.890 1 33 hm5C_associated_SNPs_29435 0 0 1 0 0 Nucleus 1 0.500231735597556 1 0.999536528804888 hm5C_site_29693 DeepMRMD:1;iRNA_m5C:0.999536528804888 29694 chr10 13251236 13251236 1 + G T LUSC 13251239 + 13251219 13251259 41 TTTTCTAGGAAAAGACTGGTCCAAAGATAGGAGGAGAAACT TTTTCTAGGAAAAGACTTGTCCAAAGATAGGAGGAGAAACT < 41bp 1 0.540498955650562 1 0.128528892993927 experiment 0.919002088698877 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13251239 chr10:13251236 nonsynonymous SNV 0.952 4 18 hm5C_associated_SNPs_29436 0 0 1 0 1 Nucleus 1 0.50023164391956 1 0.999536712160879 hm5C_site_29694 DeepMRMD:1;iRNA_m5C:0.999536712160879 29695 chr10 126505162 126505162 1 + C T LUSC 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACCATCAGTCTTGTTCAAAACTTTTT < 41bp 1 0.137854145802577 1 0.0580964684486389 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505162 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_29437 0 0 1 0 2 Nucleus 1 0.500231643921284 1 0.999536712157433 hm5C_site_29695 DeepMRMD:1;iRNA_m5C:0.999536712157433 29696 chr22 31998624 31998624 1 + A G LUSC 31998614 + 31998594 31998634 41 CCATCCTTCACGCAGAGCGACAGCTTCTGTATAGGTCTTGG CCATCCTTCACGCAGAGCGACAGCTTCTGTGTAGGTCTTGG < 41bp 1 0.160391131660082 1 0.123871803283691 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SFI1 ENSG00000198089 CDS Human protein_coding chr22:31998614 chr22:31998624 nonsynonymous SNV 0.133 0 31 hm5C_associated_SNPs_29438 0 0 1 0 1 chromatin 1 0.500231643921333 1 0.999536712157333 hm5C_site_29696 DeepMRMD:1;iRNA_m5C:0.999536712157333 29697 chr1 22336303 22336303 1 + C T LUSC 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGTCCAC < 41bp 1 0.199412974973777 1 0.0322844386100769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336303 nonsynonymous SNV 0.238 4 37 hm5C_associated_SNPs_29439 0 0 0 0 1 Endoplasmic reticulum 1 0.50023165078554 1 0.99953669842892 hm5C_site_29697 DeepMRMD:1;iRNA_m5C:0.99953669842892 29698 chr1 22336303 22336303 1 + C T LUSC 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGTCCACGGT < 41bp 1 0.573991805793584 1 0.763497114181519 experiment 0.852016388412831 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336303 nonsynonymous SNV 0.238 4 34 hm5C_associated_SNPs_29440 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643916617 0.473005771636962 0.999536712166766 hm5C_site_29698 DeepMRMD:0.473005771636962;iRNA_m5C:0.999536712166766 29699 chr1 22336303 22336303 1 + C T LUSC 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGGCTGCAACTTCATCTGGAAGTCCACGGTGTT < 41bp 1 0.260086066093793 1 0.53032523393631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336303 nonsynonymous SNV 0.238 4 31 hm5C_associated_SNPs_29441 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.93934953212738 0.999536712157815 hm5C_site_29699 DeepMRMD:0.93934953212738;iRNA_m5C:0.999536712157815 29700 chr1 22336303 22336303 1 + C T LUSC 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCATCTGGAAGTCCACGGTGTTCACTCGAGTCT < 41bp 1 0.387351876254546 1 0.410474538803101 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336303 nonsynonymous SNV 0.238 4 20 hm5C_associated_SNPs_29442 0 0 0 0 1 Endoplasmic reticulum 1 0.500209107761321 1 0.999581784477357 hm5C_site_29700 DeepMRMD:1;iRNA_m5C:0.999581784477357 29701 chr1 22336303 22336303 1 + C T LUSC 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGTCCACGGTGTTCACTCGAGTCTCCG < 41bp 1 0.480277648368484 1 0.221152156591415 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336303 nonsynonymous SNV 0.238 4 17 hm5C_associated_SNPs_29444 0 0 0 0 1 Endoplasmic reticulum 1 0.500230006857445 1 0.999539986285111 hm5C_site_29701 DeepMRMD:1;iRNA_m5C:0.999539986285111 29702 chr1 22336303 22336303 1 + C T LUSC 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGTCCACGGTGTTCACTCGAGTCTCCGCCTTCAT < 41bp 1 0.372486175946797 1 0.0185523927211761 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336303 nonsynonymous SNV 0.238 4 10 hm5C_associated_SNPs_29445 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643961588 1 0.999536712076823 hm5C_site_29702 DeepMRMD:1;iRNA_m5C:0.999536712076823 29703 chr1 22336303 22336303 1 + C T LUSC 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT TCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT < 41bp 1 0.618547041291022 1 0.170851618051529 experiment 0.762905917417956 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336303 nonsynonymous SNV 0.238 4 1 hm5C_associated_SNPs_29447 0 0 0 0 1 Endoplasmic reticulum 1 0.500227909958646 1 0.999544180082708 hm5C_site_29703 DeepMRMD:1;iRNA_m5C:0.999544180082708 29704 chr22 29533453 29533453 1 + C T LUSC 29533451 + 29533431 29533471 41 ACCATCCGGGTTCCGGGGGCCTCCCACATCCACTTCAGCTT ACCATCCGGGTTCCGGGGGCCTTCCACATCCACTTCAGCTT < 41bp 1 0.0758892904304877 1 0.0672135055065155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533451 chr22:29533453 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_29448 0 0 1 0 0 Endoplasmic reticulum 1 0.500231517374771 1 0.999536965250458 hm5C_site_29704 DeepMRMD:1;iRNA_m5C:0.999536965250458 29705 chr1 151633325 151633325 1 + C T LUSC 151633305 + 151633285 151633325 41 CGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATC CGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATT < 41bp 1 0.286445400039929 1 0.15373107790947 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX27 ENSG00000143376 CDS Human protein_coding chr1:151633305 chr1:151633325 nonsynonymous SNV 0.723 1 41 hm5C_associated_SNPs_29449 0 0 1 0 1 Ribosome 1 0.500231706500777 1 0.999536586998446 hm5C_site_29705 DeepMRMD:1;iRNA_m5C:0.999536586998446 29706 chr17 37357553 37357553 1 + A G LUSC 37357571 + 37357551 37357591 41 GAAATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGT GAGATCGCCAATGCCAACTCCCGTGAGTACCTGGGATCTGT < 41bp 1 0.139909914038959 1 0.057589590549469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37357571 chr17:37357553 synonymous SNV . 0 3 hm5C_associated_SNPs_29450 0 0 1 0 2 chromatin 1 0.500231642824855 1 0.99953671435029 hm5C_site_29706 DeepMRMD:1;iRNA_m5C:0.99953671435029 29707 chr5 82868298 82868298 1 + G C LUSC 82868278 + 82868258 82868298 41 CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTC < 41bp 1 0.531742264023068 1 0.613778710365295 experiment 0.936515471953864 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868278 chr5:82868298 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_29453 0 0 1 0 2 Ribosome 1 0.500231643921092 0.77244257926941 0.999536712157815 hm5C_site_29707 DeepMRMD:0.77244257926941;iRNA_m5C:0.999536712157815 29708 chr22 24574026 24574026 1 + C T LUSC 24574025 + 24574005 24574045 41 CCGGCCCTCTCCGCAGTCAGCCATCCTTTCTGCCCAGTCTG CCGGCCCTCTCCGCAGTCAGCTATCCTTTCTGCCCAGTCTG < 41bp 1 0.0786440413176762 1 0.0618025064468384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24574025 chr22:24574026 synonymous SNV . 0 22 hm5C_associated_SNPs_29454 0 0 0 0 1 Cytosol 1 0.500231643931073 1 0.999536712137853 hm5C_site_29708 DeepMRMD:1;iRNA_m5C:0.999536712137853 29709 chr22 24574026 24574026 1 + C T LUSC 24574029 + 24574009 24574049 41 CCCTCTCCGCAGTCAGCCATCCTTTCTGCCCAGTCTGCTGC CCCTCTCCGCAGTCAGCTATCCTTTCTGCCCAGTCTGCTGC < 41bp 1 0.0434418684171974 1 0.101039081811905 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24574029 chr22:24574026 synonymous SNV . 0 18 hm5C_associated_SNPs_29455 0 0 0 0 1 Cytosol 1 0.500231643921095 1 0.999536712157811 hm5C_site_29709 DeepMRMD:1;iRNA_m5C:0.999536712157811 29710 chr19 3525958 3525958 1 + A T LUSC 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCATCCCCTCCAGAGCCGGTGCCAACTGGAG < 41bp 1 0.366440671082577 1 0.804131865501404 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525958 synonymous SNV . 0 30 hm5C_associated_SNPs_29456 0 0 1 0 2 Ribosome 1 0.500231643921092 0.391736268997192 0.999536712157815 hm5C_site_29710 DeepMRMD:0.391736268997192;iRNA_m5C:0.999536712157815 29711 chr20 19955661 19955661 1 + A G LUSC 19955679 + 19955659 19955699 41 CCAGACGAGCATGCCAGAAACAGTCAACCATAACAAACATG CCGGACGAGCATGCCAGAAACAGTCAACCATAACAAACATG < 41bp 1 0.189500731429455 1 0.356148838996887 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19955679 chr20:19955661 nonsynonymous SNV 0.997 0 3 hm5C_associated_SNPs_29457 0 0 0 0 0 Nucleus 1 0.500231643974631 1 0.999536712050738 hm5C_site_29711 DeepMRMD:1;iRNA_m5C:0.999536712050738 29712 chr7 87530089 87530089 1 + G A LUSC 87530094 + 87530074 87530114 41 ATCAGAATCCAAACAGATGGCGATAAGTATGGTGGAACCTC ATCAGAATCCAAACAAATGGCGATAAGTATGGTGGAACCTC < 41bp 1 0.494738905426011 1 0.180264264345169 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530094 chr7:87530089 nonsynonymous SNV 0.332 0 16 hm5C_associated_SNPs_29458 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_29712 DeepMRMD:1;iRNA_m5C:0.999536712157815 29713 chr5 52204822 52204822 1 + G A LUSC 52204817 + 52204797 52204837 41 CTAGTCGGAGCCCCTATGTACATGGGAACAGAGAAGGAGGA CTAGTCGGAGCCCCTATGTACATGGAAACAGAGAAGGAGGA < 41bp 1 0.289998877180393 1 0.248504221439362 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52204817 chr5:52204822 nonsynonymous SNV 0.993 4 26 hm5C_associated_SNPs_29459 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_29713 DeepMRMD:1;iRNA_m5C:0.999536712157815 29714 chr11 73941339 73941339 1 + A G LUSC 73941327 + 73941307 73941347 41 TTGAAGCCATGTATGGGGACCTTCCTCCTCCAATTATGCTG TTGAAGCCATGTATGGGGACCTTCCTCCTCCAGTTATGCTG < 41bp 1 0.0722943176578711 1 0.0211982429027557 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PPME1 ENSG00000214517 CDS Human protein_coding chr11:73941327 chr11:73941339 nonsynonymous SNV 0.999 0 33 hm5C_associated_SNPs_29460 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_29714 DeepMRMD:1;iRNA_m5C:0.999536712157815 29715 chr5 170736590 170736590 1 + G T LUSC 170736570 + 170736550 170736590 41 GCCTCCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGG GCCTCCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGT < 41bp 1 0.473055643292683 1 0.418384373188019 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736570 chr5:170736590 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_29461 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_29715 DeepMRMD:1;iRNA_m5C:0.999536712157815 29716 chr5 170736590 170736590 1 + G T LUSC 170736572 + 170736552 170736592 41 CTCCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGGAT CTCCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGTAT < 41bp 1 0.367526495531846 1 0.137960493564606 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736572 chr5:170736590 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_29462 0 0 0 0 0 exosome 1 0.500231643921077 1 0.999536712157845 hm5C_site_29716 DeepMRMD:1;iRNA_m5C:0.999536712157845 29717 chr5 170736590 170736590 1 + G T LUSC 170736574 + 170736554 170736594 41 CCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGGATCT CCTTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGTATCT < 41bp 1 0.0964804184743219 1 0.0456824004650116 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736574 chr5:170736590 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_29463 0 0 0 0 0 exosome 1 0.500231643913693 1 0.999536712172614 hm5C_site_29717 DeepMRMD:1;iRNA_m5C:0.999536712172614 29718 chr5 170736590 170736590 1 + G T LUSC 170736576 + 170736556 170736596 41 TTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGGATCTTA TTTGCGGGCCTCGGCGCGCCCTTCGAGGACGCGGTATCTTA < 41bp 1 0.481828642787268 1 0.317850232124329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736576 chr5:170736590 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_29464 0 0 0 0 0 exosome 1 0.500231718199242 1 0.999536563601516 hm5C_site_29718 DeepMRMD:1;iRNA_m5C:0.999536563601516 29719 chr11 120352085 120352085 1 + C G LUSC 120352068 + 120352048 120352088 41 GCAGCCCATGACAGGCATCCCTGCTGTGGAATCCACCCACC GCAGCCCATGACAGGCATCCCTGCTGTGGAATCCACCGACC < 41bp 1 0.608255308816117 1 0.232279926538467 experiment 0.783489382367766 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120352068 chr11:120352085 nonsynonymous SNV 0.197 0 38 hm5C_associated_SNPs_29466 0 0 1 0 0 Cytosol 1 0.500231643929242 1 0.999536712141516 hm5C_site_29719 DeepMRMD:1;iRNA_m5C:0.999536712141516 29720 chr17 21731300 21731300 1 + G T LUSC 21731317 + 21731297 21731337 41 GCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAACATCC GCATCTGGAAGATGGCGGTACTCTTTCTGACTACAACATCC < 41bp 1 0.150661549717835 1 0.0982398092746735 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731317 chr17:21731300 nonsynonymous SNV 0.992 0 4 hm5C_associated_SNPs_29467 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29720 DeepMRMD:1;iRNA_m5C:0.999536712157815 29721 chr8 37968287 37968287 1 + C T LUSC 37968305 + 37968285 37968325 41 GGCCAACCTGACATGGCAGTCCCGAACACAGGATGAACATC GGTCAACCTGACATGGCAGTCCCGAACACAGGATGAACATC < 41bp 1 0.632084207004651 1 0.281623363494873 experiment 0.735831585990699 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASH2L ENSG00000129691 CDS Human protein_coding chr8:37968305 chr8:37968287 nonsynonymous SNV 0.899 4 3 hm5C_associated_SNPs_29468 0 0 1 0 2 chromatin 1 0.500231644675803 1 0.999536710648394 hm5C_site_29721 DeepMRMD:1;iRNA_m5C:0.999536710648394 29722 chrX 73042638 73042638 1 + C A LUSC 73042631 - 73042611 73042651 41 AGAGTGGGAATAAGAGAGGGCTTTTTATTTTTTCGTTCATA AGAGTGGGAATAATAGAGGGCTTTTTATTTTTTCGTTCATA < 41bp 1 0.00887564895169631 1 0.0164662599563599 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042631 chrX:73042638 . . 0 14 hm5C_associated_SNPs_29469 0 0 1 0 0 unknown 1 0.500231643935883 1 0.999536712128233 hm5C_site_29722 DeepMRMD:1;iRNA_m5C:0.999536712128233 29723 chr1 65895721 65895721 1 + G A LUSC 65895720 + 65895700 65895740 41 GATTTCCTGTTATTCTTGCTCGTGTGGCTGTGGTAAGTTTT GATTTCCTGTTATTCTTGCTCATGTGGCTGTGGTAAGTTTT < 41bp 1 0.172068216204263 1 0.123861581087112 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LEPROT ENSG00000213625 CDS Human protein_coding chr1:65895720 chr1:65895721 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_29470 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29723 DeepMRMD:1;iRNA_m5C:0.999536712157815 29724 chr17 33953852 33953852 1 + T C LUSC 33953838 + 33953818 33953858 41 CAGTATGTCGCCCTGAGGAACATCAACTTAATTGTCCAGAA CAGTATGTCGCCCTGAGGAACATCAACTTAATTGCCCAGAA < 41bp 1 0.384970197021493 1 0.158101469278336 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:33953838 chr17:33953852 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_29471 0 0 1 0 1 Cytosol 1 0.500231643921814 1 0.999536712156373 hm5C_site_29724 DeepMRMD:1;iRNA_m5C:0.999536712156373 29725 chr17 80426666 80426666 1 + G A LUSC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTACTGGTAGTGTCTGTGTGTCCTCAATCTTTGC < 41bp 1 0.489303822978705 1 0.553278386592865 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426666 synonymous SNV . 0 10 hm5C_associated_SNPs_29472 0 0 1 0 1 Cytosol 1 0.500231806685665 0.89344322681427 0.99953638662867 hm5C_site_29725 DeepMRMD:0.89344322681427;iRNA_m5C:0.99953638662867 29726 chr19 10657572 10657572 1 + C T LUSC 10657575 + 10657555 10657595 41 GCTGTCAGGGTCAGCCTCTCCCAGCCGGTACCATGGGCCTG GCTGTCAGGGTCAGCCTTTCCCAGCCGGTACCATGGGCCTG < 41bp 1 0.51637379835187 1 0.439201891422272 experiment 0.967252403296261 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4D ENSG00000130734 CDS Human protein_coding chr19:10657575 chr19:10657572 nonsynonymous SNV 0.155 3 18 hm5C_associated_SNPs_29473 0 0 1 0 1 Ribosome 1 0.500231645167834 1 0.999536709664333 hm5C_site_29726 DeepMRMD:1;iRNA_m5C:0.999536709664333 29727 chr1 109801659 109801659 1 + C T LUSC 109801667 + 109801647 109801687 41 CGCTGCCGCAGCCGCGAGGGCGGCTACACCTGCCTCTGTCG CGCTGCCGCAGCTGCGAGGGCGGCTACACCTGCCTCTGTCG < 41bp 1 0.283798995760737 1 0.751847982406616 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801667 chr1:109801659 nonsynonymous SNV 0.998 2 13 hm5C_associated_SNPs_29474 0 0 1 0 1 Endoplasmic reticulum 1 0.500231642609981 0.496304035186768 0.999536714780039 hm5C_site_29727 DeepMRMD:0.496304035186768;iRNA_m5C:0.999536714780039 29728 chr22 30038233 30038233 1 + G A LUSC 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTAAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG < 41bp 1 0.670010011061698 1 0.401522934436798 experiment 0.659979977876604 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038233 nonsynonymous SNV 0.996 5 6 hm5C_associated_SNPs_29475 0 0 1 0 2 Ribosome 1 0.500231643921101 1 0.999536712157799 hm5C_site_29728 DeepMRMD:1;iRNA_m5C:0.999536712157799 29729 chr14 102797996 102797996 1 + C T LUSC 102798016 + 102797996 102798036 41 CTGAACCAGAAAATGGAGCTCTTTTGCGATCAGAGAGATAC TTGAACCAGAAAATGGAGCTCTTTTGCGATCAGAGAGATAC < 41bp 1 0.0486725673012092 1 0.0455986857414246 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102798016 chr14:102797996 nonsynonymous SNV 0.303 2 1 hm5C_associated_SNPs_29476 0 0 1 1 0 chromatin 1 0.500231643920951 1 0.999536712158098 hm5C_site_29729 DeepMRMD:1;iRNA_m5C:0.999536712158098 29730 chr14 102499721 102499721 1 + G T LUSC 102499701 + 102499681 102499721 41 GACAACCAGCAGAAGGCCAACGAGGTGGAGCAGATGATCCG GACAACCAGCAGAAGGCCAACGAGGTGGAGCAGATGATCCT < 41bp 1 0.278634142344662 1 0.726874113082886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499701 chr14:102499721 nonsynonymous SNV 0.987 1 41 hm5C_associated_SNPs_29477 0 0 1 0 0 Cytosol 1 0.500231643962895 0.546251773834228 0.99953671207421 hm5C_site_29730 DeepMRMD:0.546251773834228;iRNA_m5C:0.99953671207421 29731 chr14 102499721 102499721 1 + G T LUSC 102499719 + 102499699 102499739 41 AACGAGGTGGAGCAGATGATCCGAGACCTGGAAGCCAGCAT AACGAGGTGGAGCAGATGATCCTAGACCTGGAAGCCAGCAT < 41bp 1 0.0641644043136436 1 0.384467929601669 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499719 chr14:102499721 nonsynonymous SNV 0.987 1 23 hm5C_associated_SNPs_29478 0 0 1 0 0 Cytosol 1 0.50023164388945 1 0.999536712221099 hm5C_site_29731 DeepMRMD:1;iRNA_m5C:0.999536712221099 29732 chr14 102499721 102499721 1 + G T LUSC 102499720 + 102499700 102499740 41 ACGAGGTGGAGCAGATGATCCGAGACCTGGAAGCCAGCATC ACGAGGTGGAGCAGATGATCCTAGACCTGGAAGCCAGCATC < 41bp 1 0.476984593319792 1 0.593962073326111 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499720 chr14:102499721 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_29479 0 0 1 0 0 Cytosol 1 0.500231642248447 0.812075853347778 0.999536715503107 hm5C_site_29732 DeepMRMD:0.812075853347778;iRNA_m5C:0.999536715503107 29733 chr8 61655358 61655358 1 + A T LUSC 61655344 + 61655324 61655364 41 ATCGGACAGAGGAATATGGGCCCCAGAAACATGCAGCAGTC ATCGGACAGAGGAATATGGGCCCCAGAAACATGCTGCAGTC < 41bp 1 0.410037275978274 1 0.0966956913471222 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD7 ENSG00000171316 CDS Human protein_coding chr8:61655344 chr8:61655358 nonsynonymous SNV 1.000 0 35 hm5C_associated_SNPs_29480 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29733 DeepMRMD:1;iRNA_m5C:0.999536712157815 29734 chr5 1034385 1034385 1 + C A LUSC 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGACGAACGCCAGGAGTGGACGTTCACGCT < 41bp 1 0.493690028622126 1 0.633056879043579 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034385 nonsynonymous SNV 0.038 1 18 hm5C_associated_SNPs_29481 0 0 0 0 2 exosome 1 0.500231666694722 0.733886241912842 0.999536666610555 hm5C_site_29734 DeepMRMD:0.733886241912842;iRNA_m5C:0.999536666610555 29735 chr7 142561968 142561968 1 + A G LUSC 142561972 + 142561952 142561992 41 TACCGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC TACCGTCAGGCTGAGGGGCCCGACAGCCCTGACAGCGTTTC < 41bp 1 0.684943205468582 1 0.198333859443665 experiment 0.630113589062836 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561972 chr7:142561968 nonsynonymous SNV 0.995 1 17 hm5C_associated_SNPs_29482 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643922194 1 0.999536712155613 hm5C_site_29735 DeepMRMD:1;iRNA_m5C:0.999536712155613 29736 chr2 11300664 11300664 1 + C T LUSC 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT CGCTGACCTACCTGGAGTACCCCATCCTTATCGCGCAAGGT < 41bp 1 0.183425425158263 1 0.31443452835083 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300664 synonymous SNV . 0 29 hm5C_associated_SNPs_29483 0 0 1 0 2 Ribosome 1 0.500231644251256 1 0.999536711497488 hm5C_site_29736 DeepMRMD:1;iRNA_m5C:0.999536711497488 29737 chr17 48434128 48434128 1 + T G LUSC 48434109 + 48434089 48434129 41 ACCATGCCGCCACTGCTGCACCCCCAATGGGCACCCCACTC ACCATGCCGCCACTGCTGCACCCCCAATGGGCACCCCACGC < 41bp 1 0.142771243354491 1 0.0547497272491455 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48434109 chr17:48434128 nonsynonymous SNV 0.857 0 40 hm5C_associated_SNPs_29484 0 0 1 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29737 DeepMRMD:1;iRNA_m5C:0.999536712157815 29738 chr2 32897410 32897410 1 + G C LUSC 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCCGATCTG < 41bp 1 0.208142368362903 1 0.241556257009506 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897410 synonymous SNV . 0 35 hm5C_associated_SNPs_29485 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_29738 DeepMRMD:1;iRNA_m5C:0.999536712157813 29739 chr11 65386185 65386185 1 + C T LUSC 65386204 + 65386184 65386224 41 TCCTGCTACTCCCCTGAGAGCTCCCGGGGTGCAGCAGGGGG TTCTGCTACTCCCCTGAGAGCTCCCGGGGTGCAGCAGGGGG < 41bp 1 0.231596074166622 1 0.396103024482727 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65386204 chr11:65386185 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_29486 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29739 DeepMRMD:1;iRNA_m5C:0.999536712157815 29740 chr1 47838719 47838719 1 + C G LUSC 47838724 + 47838704 47838744 41 CCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATG CCTTCAAGGATGGAAGAAGACCATGGATGGGAAGGCAGATG < 41bp 1 0.461552895079547 1 0.0771947503089905 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838724 chr1:47838719 nonsynonymous SNV 0.996 1 16 hm5C_associated_SNPs_29487 0 0 1 2 2 chromatin 1 0.500231643919047 1 0.999536712161907 hm5C_site_29740 DeepMRMD:1;iRNA_m5C:0.999536712161907 29741 chr10 5494346 5494346 1 + G C LUSC 5494328 + 5494308 5494348 41 TTTCTTTTTTAAGTCATTTACCCTTCGTGGTGACCACAGAT TTTCTTTTTTAAGTCATTTACCCTTCGTGGTGACCACACAT < 41bp 1 0.0883154325192702 1 0.0573877096176147 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NET1 ENSG00000173848 CDS Human protein_coding chr10:5494328 chr10:5494346 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_29488 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_29741 DeepMRMD:1;iRNA_m5C:0.999536712157815 29742 chr22 38201952 38201952 1 + C T LUSC 38201937 + 38201917 38201957 41 GGCATCCAAGCCCAAGAAGGCTGCCTCCAAAGCCCCAACCA GGCATCCAAGCCCAAGAAGGCTGCCTCCAAAGCCCTAACCA < 41bp 1 0.378825316887174 1 0.181041389703751 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control H1F0 ENSG00000189060 CDS Human protein_coding chr22:38201937 chr22:38201952 nonsynonymous SNV 0.925 1 36 hm5C_associated_SNPs_29489 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_29742 DeepMRMD:1;iRNA_m5C:0.999536712157815 29743 chr16 24817981 24817981 1 + A G LUSC 24817997 + 24817977 24818017 41 CACCATCTCAGCAGCAGCCACTCCATCAGCCAGCCATGAAG CACCGTCTCAGCAGCAGCCACTCCATCAGCCAGCCATGAAG < 41bp 1 0.685594256041323 1 0.96845555305481 experiment 0.628811487917355 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24817997 chr16:24817981 synonymous SNV . 0 5 hm5C_associated_SNPs_29490 0 0 0 0 0 Nucleus 1 0.500231641812839 0.06308889389038 0.999536716374323 hm5C_site_29743 DeepMRMD:0.06308889389038;iRNA_m5C:0.999536716374323 29744 chr5 118529647 118529647 1 + C G LUSC 118529637 + 118529617 118529657 41 TAGCATCAGATTTCCATCTCCAGGAACATTCTAATTCAAAT TAGCATCAGATTTCCATCTCCAGGAACATTGTAATTCAAAT < 41bp 1 0.263935381993033 1 0.878318846225739 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DMXL1 ENSG00000172869 CDS Human protein_coding chr5:118529637 chr5:118529647 nonsynonymous SNV 0.995 3 31 hm5C_associated_SNPs_29491 0 0 1 0 1 Cytosol 1 0.500248715710173 0.243362307548522 0.999502568579654 hm5C_site_29744 DeepMRMD:0.243362307548522;iRNA_m5C:0.999502568579654 29745 chr16 30773931 30773931 1 + T C LUSC 30773915 + 30773895 30773935 41 CCGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGT CCGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCCGAGT < 41bp 1 0.12761057684388 1 0.282474994659424 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773915 chr16:30773931 nonsynonymous SNV 0.996 0 37 hm5C_associated_SNPs_29492 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29745 DeepMRMD:1;iRNA_m5C:0.999536712157815 29746 chr16 30773931 30773931 1 + T C LUSC 30773916 + 30773896 30773936 41 CGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTC CGGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCCGAGTC < 41bp 1 0.402872423199837 1 0.45452493429184 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773916 chr16:30773931 nonsynonymous SNV 0.996 0 36 hm5C_associated_SNPs_29493 0 0 1 0 1 Ribosome 1 0.500231643970261 1 0.999536712059478 hm5C_site_29746 DeepMRMD:1;iRNA_m5C:0.999536712059478 29747 chr16 30773931 30773931 1 + T C LUSC 30773917 + 30773897 30773937 41 GGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTCG GGCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCCGAGTCG < 41bp 1 0.579410029859442 1 0.688372492790222 experiment 0.841179940281116 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773917 chr16:30773931 nonsynonymous SNV 0.996 0 35 hm5C_associated_SNPs_29494 0 0 1 0 1 Ribosome 1 0.500231643921092 0.623255014419556 0.999536712157815 hm5C_site_29747 DeepMRMD:0.623255014419556;iRNA_m5C:0.999536712157815 29748 chr16 30773931 30773931 1 + T C LUSC 30773918 + 30773898 30773938 41 GCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCTGAGTCGT GCGACGGGGGCTCAGGGCCCCCGGAAAAGAAGCCGAGTCGT < 41bp 1 0.669617580426288 1 0.575144231319427 experiment 0.660764839147424 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773918 chr16:30773931 nonsynonymous SNV 0.996 0 34 hm5C_associated_SNPs_29495 0 0 1 0 1 Ribosome 1 0.500231643958024 0.849711537361146 0.999536712083953 hm5C_site_29748 DeepMRMD:0.849711537361146;iRNA_m5C:0.999536712083953 29749 chr11 73638345 73638345 1 + A C LUSC 73638335 + 73638315 73638355 41 ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCTA ATTCTTGTGTTTTAGGTAGCCACATGGGAGCAGCAGATCTA < 41bp 1 0.60622309279437 1 0.828021645545959 experiment 0.78755381441126 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73638335 chr11:73638345 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_29496 0 0 1 0 1 Ribosome 1 0.500231649181918 0.343956708908082 0.999536701636163 hm5C_site_29749 DeepMRMD:0.343956708908082;iRNA_m5C:0.999536701636163 29750 chr15 41192573 41192573 1 + C G LUSC 41192553 + 41192533 41192573 41 TGCAGGGCGACCCAGAGGCCCTGACTCTCTACCGAGAAACC TGCAGGGCGACCCAGAGGCCCTGACTCTCTACCGAGAAACG < 41bp 1 0.10094002900389 1 0.0486082434654236 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192553 chr15:41192573 synonymous SNV . 0 41 hm5C_associated_SNPs_29497 0 0 0 0 0 chromatin 1 0.500231643921058 1 0.999536712157885 hm5C_site_29750 DeepMRMD:1;iRNA_m5C:0.999536712157885 29751 chr1 237044071 237044071 1 + A C LUSC 237044057 + 237044037 237044077 41 TCTGACCCTTCTTTTTAGAACCCACACAGCAGTTAAAATAG TCTGACCCTTCTTTTTAGAACCCACACAGCAGTTCAAATAG < 41bp 1 0.0353023449400283 1 0.0942713022232056 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTR ENSG00000116984 CDS Human protein_coding chr1:237044057 chr1:237044071 nonsynonymous SNV 0.998 4 35 hm5C_associated_SNPs_29498 0 0 1 0 2 Nucleus 1 0.500250460894089 1 0.999499078211822 hm5C_site_29751 DeepMRMD:1;iRNA_m5C:0.999499078211822 29752 chr19 39215195 39215195 1 + C A LUSC 39215182 + 39215162 39215202 41 GCCAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATG GCCAGGCCAATGTTGTGGGGCCCTGGATCCAGAACAAGATG < 41bp 1 0.0888925041976835 1 0.021841287612915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215182 chr19:39215195 nonsynonymous SNV 0.998 0 34 hm5C_associated_SNPs_29499 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29752 DeepMRMD:1;iRNA_m5C:0.999536712157815 29753 chr19 39215195 39215195 1 + C A LUSC 39215191 + 39215171 39215211 41 ATGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGG ATGTTGTGGGGCCCTGGATCCAGAACAAGATGGAGGTGAGG < 41bp 1 0.610170207422138 1 0.701059281826019 experiment 0.779659585155724 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215191 chr19:39215195 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_29501 0 0 1 0 1 Nucleus 1 0.500231643138513 0.597881436347962 0.999536713722974 hm5C_site_29753 DeepMRMD:0.597881436347962;iRNA_m5C:0.999536713722974 29754 chr10 17271421 17271421 1 + C A LUSC 17271407 + 17271387 17271427 41 CGCCGCCGCCCAGGCCATCGCCACCCTCCGCAGCCATGTCC CGCCGCCGCCCAGGCCATCGCCACCCTCCGCAGCAATGTCC < 41bp 1 0.493329107942426 1 0.0856778919696808 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VIM-AS1 ENSG00000229124 ncRNA_exonic Human antisense chr10:17271407 chr10:17271421 . . 0 35 hm5C_associated_SNPs_29502 0 0 1 0 0 unknown 1 0.500231643921102 1 0.999536712157796 hm5C_site_29754 DeepMRMD:1;iRNA_m5C:0.999536712157796 29755 chr16 67914783 67914783 1 + C G LUSC 67914803 + 67914783 67914823 41 CCCCTCCCTCCTGGAGGCAGCCTTGACCCAGGAGGCCTCGA GCCCTCCCTCCTGGAGGCAGCCTTGACCCAGGAGGCCTCGA < 41bp 1 0.0486473342321206 1 0.125474870204926 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914803 chr16:67914783 synonymous SNV . 0 1 hm5C_associated_SNPs_29503 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29755 DeepMRMD:1;iRNA_m5C:0.999536712157815 29756 chr20 37570718 37570718 1 + T C LUSC 37570736 + 37570716 37570756 41 TCTCAATTTCTGGATATGTGCATGGATCTGAAAGTTCATCC TCCCAATTTCTGGATATGTGCATGGATCTGAAAGTTCATCC < 41bp 1 0.41238750938188 1 0.0542148947715759 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570736 chr20:37570718 synonymous SNV . 0 3 hm5C_associated_SNPs_29504 0 0 1 0 1 Ribosome 1 0.500231570946291 1 0.999536858107418 hm5C_site_29756 DeepMRMD:1;iRNA_m5C:0.999536858107418 29757 chr1 218458662 218458662 1 + G C LUSC 218458666 + 218458646 218458686 41 CCGGCGCAGAAAAATGGCAGCCGCCGCTCCGGACTCACGTG CCGGCGCAGAAAAATGCCAGCCGCCGCTCCGGACTCACGTG < 41bp 1 0.322557558044973 1 0.295867025852203 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RRP15 ENSG00000067533 CDS Human protein_coding chr1:218458666 chr1:218458662 nonsynonymous SNV 0.039 1 17 hm5C_associated_SNPs_29505 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29757 DeepMRMD:1;iRNA_m5C:0.999536712157815 29758 chr11 67354004 67354004 1 + C G LUSC 67353999 + 67353979 67354019 41 CAAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACC CAAGCTCAAGGCCTTCCTGGCCTCCGCTGAGTACGTGAACC < 41bp 1 0.0273320024813381 1 0.2029729783535 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67353999 chr11:67354004 nonsynonymous SNV 0.974 0 26 hm5C_associated_SNPs_29506 0 0 1 0 0 Cytosol 1 0.500231643920831 1 0.999536712158339 hm5C_site_29758 DeepMRMD:1;iRNA_m5C:0.999536712158339 29759 chr11 67354004 67354004 1 + C G LUSC 67354000 + 67353980 67354020 41 AAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACCT AAGCTCAAGGCCTTCCTGGCCTCCGCTGAGTACGTGAACCT < 41bp 1 0.478261080699224 1 0.733335375785828 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67354000 chr11:67354004 nonsynonymous SNV 0.974 0 25 hm5C_associated_SNPs_29507 0 0 1 0 0 Cytosol 1 0.500231643921092 0.533329248428344 0.999536712157815 hm5C_site_29759 DeepMRMD:0.533329248428344;iRNA_m5C:0.999536712157815 29760 chr10 26994282 26994282 1 + G T LUSC 26994265 + 26994245 26994285 41 ACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTT ACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCTGTT < 41bp 1 0.218927803425944 1 0.0496455729007721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994265 chr10:26994282 nonsynonymous SNV 0.987 3 38 hm5C_associated_SNPs_29508 0 0 0 0 2 Ribosome 1 0.500231643922403 1 0.999536712155193 hm5C_site_29760 DeepMRMD:1;iRNA_m5C:0.999536712155193 29761 chr7 142460355 142460355 1 + T A LUSC 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTA < 41bp 1 0.0559660186949626 1 0.175379753112793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460355 synonymous SNV . 0 31 hm5C_associated_SNPs_29509 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29761 DeepMRMD:1;iRNA_m5C:0.999536712157815 29762 chr7 142460355 142460355 1 + T A LUSC 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTAC < 41bp 1 0.279763911444594 1 0.513380169868469 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460355 synonymous SNV . 0 30 hm5C_associated_SNPs_29510 0 0 0 0 2 Cytosol 1 0.500231627300167 0.973239660263062 0.999536745399666 hm5C_site_29762 DeepMRMD:0.973239660263062;iRNA_m5C:0.999536745399666 29763 chr7 142460355 142460355 1 + T A LUSC 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCA < 41bp 1 0.0225839102579718 1 0.200101405382156 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460355 synonymous SNV . 0 28 hm5C_associated_SNPs_29511 0 0 0 0 2 Cytosol 1 0.500231644136495 1 0.999536711727011 hm5C_site_29763 DeepMRMD:1;iRNA_m5C:0.999536711727011 29764 chr7 142460355 142460355 1 + T A LUSC 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCAG < 41bp 1 0.193897441186422 1 0.200788646936417 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460355 synonymous SNV . 0 27 hm5C_associated_SNPs_29512 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29764 DeepMRMD:1;iRNA_m5C:0.999536712157815 29765 chr7 142460355 142460355 1 + T A LUSC 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCAGCAA < 41bp 1 0.520130115498469 1 0.721673130989075 experiment 0.959739769003061 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460355 synonymous SNV . 0 24 hm5C_associated_SNPs_29513 0 0 0 0 2 Cytosol 1 0.500231643921092 0.55665373802185 0.999536712157815 hm5C_site_29765 DeepMRMD:0.55665373802185;iRNA_m5C:0.999536712157815 29766 chr7 142460355 142460355 1 + T A LUSC 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCTACCCAGGAAAGATTACCAGCAAC < 41bp 1 0.527223695986421 1 0.598798751831055 experiment 0.945552608027159 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460355 synonymous SNV . 0 23 hm5C_associated_SNPs_29514 0 0 0 0 2 Cytosol 1 0.500231643921092 0.80240249633789 0.999536712157815 hm5C_site_29766 DeepMRMD:0.80240249633789;iRNA_m5C:0.999536712157815 29767 chr7 142460355 142460355 1 + T A LUSC 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCAGGAAAGATTACCAGCAACATGTTCTGTGTGG < 41bp 1 0.141708701186837 1 0.112222105264664 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460355 synonymous SNV . 0 10 hm5C_associated_SNPs_29516 0 0 0 0 2 Cytosol 1 0.500231643918616 1 0.999536712162768 hm5C_site_29767 DeepMRMD:1;iRNA_m5C:0.999536712162768 29768 chr7 142460355 142460355 1 + T A LUSC 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCAGGAAAGATTACCAGCAACATGTTCTGTGTGGG < 41bp 1 0.640751384197836 1 0.822092294692993 experiment 0.718497231604328 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460355 synonymous SNV . 0 9 hm5C_associated_SNPs_29517 0 0 0 0 2 Cytosol 1 0.500231470589651 0.355815410614014 0.999537058820699 hm5C_site_29768 DeepMRMD:0.355815410614014;iRNA_m5C:0.999537058820699 29769 chr7 142460355 142460355 1 + T A LUSC 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCAGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT < 41bp 1 0.495359073204251 1 0.543113052845001 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460355 synonymous SNV . 0 6 hm5C_associated_SNPs_29518 0 0 0 0 2 Cytosol 1 0.500231643921093 0.913773894309998 0.999536712157814 hm5C_site_29769 DeepMRMD:0.913773894309998;iRNA_m5C:0.999536712157814 29770 chr7 142460355 142460355 1 + T A LUSC 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCAGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT < 41bp 1 0.195078689489534 1 0.069938451051712 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460355 synonymous SNV . 0 3 hm5C_associated_SNPs_29519 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_29770 DeepMRMD:1;iRNA_m5C:0.999536712157814 29771 chr2 32656058 32656058 1 + C T LUSC 32656070 + 32656050 32656090 41 TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAA TAGAAGTTTAACAAGAACAGCAGCAAAGGAGGCATCCTCAA < 41bp 1 0.301427826803802 1 0.152265131473541 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656070 chr2:32656058 stopgain 0.998 1 9 hm5C_associated_SNPs_29520 0 0 1 0 0 Nucleus 1 0.500231638334254 1 0.999536723331491 hm5C_site_29771 DeepMRMD:1;iRNA_m5C:0.999536723331491 29772 chr2 32656071 32656071 1 + A C LUSC 32656070 + 32656050 32656090 41 TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAA TAGAAGTTCAACAAGAACAGCCGCAAAGGAGGCATCCTCAA < 41bp 1 0.147737480998986 1 0.0655243694782257 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656070 chr2:32656071 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_29521 0 0 1 0 1 Nucleus 1 0.500231638681251 1 0.999536722637498 hm5C_site_29772 DeepMRMD:1;iRNA_m5C:0.999536722637498 29773 chr17 26685959 26685959 1 + G A LUSC 26685943 + 26685923 26685963 41 AACCTTTTCTTCTCAGATTCCAAACTATACCTCCATGAGCT AACCTTTTCTTCTCAGATTCCAAACTATACCTCCATAAGCT < 41bp 1 0.108976790913818 1 0.115797102451324 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM199 ENSG00000244045 CDS Human protein_coding chr17:26685943 chr17:26685959 nonsynonymous SNV 0.991 3 37 hm5C_associated_SNPs_29522 0 0 1 0 2 Ribosome 1 0.500231639446785 1 0.99953672110643 hm5C_site_29773 DeepMRMD:1;iRNA_m5C:0.99953672110643 29774 chr12 111744769 111744769 1 + C T LUSC 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCGGGCCCTCGGCTGGAGGCTGCGCTGGCCTCCAAGGACA < 41bp 1 0.521965070503231 1 0.127108305692673 experiment 0.956069858993538 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744769 synonymous SNV . 0 22 hm5C_associated_SNPs_29523 0 0 0 0 1 exosome 1 0.500231644459849 1 0.999536711080303 hm5C_site_29774 DeepMRMD:1;iRNA_m5C:0.999536711080303 29775 chr12 111744769 111744769 1 + C T LUSC 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCTGCGCTGGCCTCCAAGGACAGGGAGATCC < 41bp 1 0.0317638717705708 1 0.0769859552383423 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744769 synonymous SNV . 0 13 hm5C_associated_SNPs_29524 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29775 DeepMRMD:1;iRNA_m5C:0.999536712157815 29776 chr12 111744769 111744769 1 + C T LUSC 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCTGCGCTGGCCTCCAAGGACAGGGAGATCCT < 41bp 1 0.510912278464031 1 0.951729834079742 experiment 0.978175443071938 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744769 synonymous SNV . 0 12 hm5C_associated_SNPs_29525 0 0 0 0 1 exosome 1 0.500233451141146 0.096540331840516 0.999533097717709 hm5C_site_29776 DeepMRMD:0.096540331840516;iRNA_m5C:0.999533097717709 29777 chr12 111744769 111744769 1 + C T LUSC 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCTGCGCTGGCCTCCAAGGACAGGGAGATCCTGC < 41bp 1 0.270768665597215 1 0.84329742193222 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744769 synonymous SNV . 0 10 hm5C_associated_SNPs_29526 0 0 0 0 1 exosome 1 0.500231818389678 0.31340515613556 0.999536363220643 hm5C_site_29777 DeepMRMD:0.31340515613556;iRNA_m5C:0.999536363220643 29778 chr12 111744769 111744769 1 + C T LUSC 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCTGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG < 41bp 1 0.417368120129342 1 0.823225021362305 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744769 synonymous SNV . 0 9 hm5C_associated_SNPs_29527 0 0 0 0 1 exosome 1 0.500231643921092 0.35354995727539 0.999536712157815 hm5C_site_29778 DeepMRMD:0.35354995727539;iRNA_m5C:0.999536712157815 29779 chr19 11105646 11105646 1 + G C LUSC 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCCG < 41bp 1 0.643163187323227 1 0.701238751411438 experiment 0.713673625353547 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105646 nonsynonymous SNV 0.010 4 40 hm5C_associated_SNPs_29528 0 0 1 0 1 Nucleus 1 0.500231643921753 0.597522497177124 0.999536712156494 hm5C_site_29779 DeepMRMD:0.597522497177124;iRNA_m5C:0.999536712156494 29780 chr19 58906108 58906108 1 + C G LUSC 58906094 + 58906074 58906114 41 AGAAGAAGGACGAGCTGGAGCGTGTGGCCAAGTCCAACCGC AGAAGAAGGACGAGCTGGAGCGTGTGGCCAAGTCGAACCGC < 41bp 1 0.655669862638692 1 0.302331566810608 experiment 0.688660274722615 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906094 chr19:58906108 synonymous SNV . 0 35 hm5C_associated_SNPs_29529 0 0 1 0 1 Ribosome 1 0.500231499886707 1 0.999537000226586 hm5C_site_29780 DeepMRMD:1;iRNA_m5C:0.999537000226586 29781 chr19 58906108 58906108 1 + C G LUSC 58906102 + 58906082 58906122 41 GACGAGCTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTC GACGAGCTGGAGCGTGTGGCCAAGTCGAACCGCTGATTTTC < 41bp 1 0.672004706194465 1 0.623730719089508 experiment 0.655990587611071 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906102 chr19:58906108 synonymous SNV . 0 27 hm5C_associated_SNPs_29530 0 0 1 0 1 Ribosome 1 0.500231643921128 0.752538561820984 0.999536712157743 hm5C_site_29781 DeepMRMD:0.752538561820984;iRNA_m5C:0.999536712157743 29782 chr19 58906108 58906108 1 + C G LUSC 58906107 + 58906087 58906127 41 GCTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTCCCAGC GCTGGAGCGTGTGGCCAAGTCGAACCGCTGATTTTCCCAGC < 41bp 1 0.639144196515235 1 0.576882243156433 experiment 0.721711606969529 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906107 chr19:58906108 synonymous SNV . 0 22 hm5C_associated_SNPs_29531 0 0 1 0 1 Ribosome 1 0.500231643928429 0.846235513687134 0.999536712143142 hm5C_site_29782 DeepMRMD:0.846235513687134;iRNA_m5C:0.999536712143142 29783 chr19 10794147 10794147 1 + C T LUSC 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCCCTGACACCCCTTTCGCCCTTG < 41bp 1 0.451699805133494 1 0.153491526842117 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794147 nonsynonymous SNV 0.224 1 32 hm5C_associated_SNPs_29532 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29783 DeepMRMD:1;iRNA_m5C:0.999536712157815 29784 chr19 10794147 10794147 1 + C T LUSC 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCCCTGACACCCCTTTCGCCCTTGATGCCA < 41bp 1 0.256798637313306 1 0.0395611226558685 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794147 nonsynonymous SNV 0.224 1 26 hm5C_associated_SNPs_29533 0 0 1 0 1 Cytosol 1 0.500231643920052 1 0.999536712159895 hm5C_site_29784 DeepMRMD:1;iRNA_m5C:0.999536712159895 29785 chr2 75107472 75107472 1 + G A LUSC 75107484 + 75107464 75107504 41 GGATGGCAGTGGCAAAGGTGCAGCCATGGTGACAGCAGTGG GGATGGCAATGGCAAAGGTGCAGCCATGGTGACAGCAGTGG < 41bp 1 0.306565567777666 1 0.0725996792316437 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HK2 ENSG00000159399 CDS Human protein_coding chr2:75107484 chr2:75107472 nonsynonymous SNV 0.998 3 9 hm5C_associated_SNPs_29534 0 0 0 0 1 Nucleus 1 0.500226837978107 1 0.999546324043786 hm5C_site_29785 DeepMRMD:1;iRNA_m5C:0.999546324043786 29786 chr5 7889305 7889305 1 + G T LUSC 7889293 + 7889273 7889313 41 GTGCAGTAAACAAGGGGCAGCCGATTATAGCCGCTTTGTAC GTGCAGTAAACAAGGGGCAGCCGATTATAGCCTCTTTGTAC < 41bp 1 0.209518129954156 1 0.0996688306331635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7889293 chr5:7889305 nonsynonymous SNV 0.029 0 33 hm5C_associated_SNPs_29535 0 0 1 0 2 Nucleus 1 0.500231643922132 1 0.999536712155737 hm5C_site_29786 DeepMRMD:1;iRNA_m5C:0.999536712155737 29787 chr20 44673693 44673693 1 + A G LUSC 44673677 + 44673657 44673697 41 TCTCCATGGGTAATTGTCATCGGATCCTTCTTCTCCACCTG TCTCCATGGGTAATTGTCATCGGATCCTTCTTCTCCGCCTG < 41bp 1 0.583233220909574 1 0.833322644233704 experiment 0.833533558180853 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44673677 chr20:44673693 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_29536 0 0 0 0 2 cytosol 1 0.50023164389637 0.333354711532592 0.99953671220726 hm5C_site_29787 DeepMRMD:0.333354711532592;iRNA_m5C:0.99953671220726 29788 chr16 2806571 2806571 1 + G A LUSC 2806570 + 2806550 2806590 41 GCAAGCGGCGCGTCGAGCTGCGATGCCTCGAGCTGGAGGAG GCAAGCGGCGCGTCGAGCTGCAATGCCTCGAGCTGGAGGAG < 41bp 1 0.177970282143934 1 0.157950729131699 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806570 chr16:2806571 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_29538 0 0 1 0 1 Nucleus 1 0.500231643921257 1 0.999536712157487 hm5C_site_29788 DeepMRMD:1;iRNA_m5C:0.999536712157487 29789 chr20 31021637 31021637 1 + C T LUSC 31021621 + 31021601 31021641 41 TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATCGTCAGTC TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATCGTTAGTC < 41bp 1 0.131471594382374 1 0.200576514005661 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021621 chr20:31021637 stopgain 1.000 1 37 hm5C_associated_SNPs_29541 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29789 DeepMRMD:1;iRNA_m5C:0.999536712157815 29790 chr1 39851507 39851507 1 + C G LUSC 39851491 + 39851471 39851511 41 CGAGGTTAAGGAGGCTCAGACACTGTGCGATGAACTCTCAG CGAGGTTAAGGAGGCTCAGACACTGTGCGATGAACTGTCAG < 41bp 1 0.162496953289647 1 0.382231920957565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39851491 chr1:39851507 synonymous SNV . 0 37 hm5C_associated_SNPs_29542 0 0 1 0 1 Endoplasmic reticulum 1 0.500231629862009 1 0.999536740275983 hm5C_site_29790 DeepMRMD:1;iRNA_m5C:0.999536740275983 29791 chr4 57179504 57179504 1 + A T LUSC 57179501 + 57179481 57179521 41 AGCACAAGCTGGCTGTTAAGCCAAAAAAACAGAGGGTGTCA AGCACAAGCTGGCTGTTAAGCCATAAAAACAGAGGGTGTCA < 41bp 1 0.301260867954777 1 0.461826175451279 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57179501 chr4:57179504 stopgain 0.999 0 24 hm5C_associated_SNPs_29543 0 0 0 0 1 cytosol 1 0.500231564147353 1 0.999536871705293 hm5C_site_29791 DeepMRMD:1;iRNA_m5C:0.999536871705293 29792 chr10 104140382 104140382 1 + A G LUSC 104140373 + 104140353 104140393 41 CCCTCGGCCCTCTGGGAGATCACCTGGGAACGCATTGACTG CCCTCGGCCCTCTGGGAGATCACCTGGGAGCGCATTGACTG < 41bp 1 0.44672347134853 1 0.0708232223987579 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104140373 chr10:104140382 synonymous SNV . 0 30 hm5C_associated_SNPs_29544 0 0 1 0 0 Nucleus 1 0.500231643924768 1 0.999536712150463 hm5C_site_29792 DeepMRMD:1;iRNA_m5C:0.999536712150463 29793 chr4 57179503 57179503 1 + A T LUSC 57179501 + 57179481 57179521 41 AGCACAAGCTGGCTGTTAAGCCAAAAAAACAGAGGGTGTCA AGCACAAGCTGGCTGTTAAGCCTAAAAAACAGAGGGTGTCA < 41bp 1 0.255409341990836 1 0.152292251586914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57179501 chr4:57179503 synonymous SNV . 0 23 hm5C_associated_SNPs_29545 0 0 0 0 1 cytosol 1 0.500229313543327 1 0.999541372913346 hm5C_site_29793 DeepMRMD:1;iRNA_m5C:0.999541372913346 29794 chr19 12014727 12014727 1 + T G LUSC 12014742 + 12014722 12014762 41 AAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAAAA AAAAGGTGGAAAGACCAGAACATTGAATATGAGTACCAAAA < 41bp 1 0.115722329264225 1 0.154506862163544 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF69 ENSG00000198429 CDS Human protein_coding chr19:12014742 chr19:12014727 nonsynonymous SNV 0.010 0 6 hm5C_associated_SNPs_29546 0 0 0 0 2 Nucleus 1 0.500231643920814 1 0.999536712158372 hm5C_site_29794 DeepMRMD:1;iRNA_m5C:0.999536712158372 29795 chr5 70818775 70818775 1 + A T LUSC 70818769 + 70818749 70818789 41 AAGAGCAATATCTCAATAAACTAACAAGGTAACATTTTATT AAGAGCAATATCTCAATAAACTAACATGGTAACATTTTATT < 41bp 1 0.104214515246169 1 0.0773312747478485 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BDP1 ENSG00000145734 CDS Human protein_coding chr5:70818769 chr5:70818775 nonsynonymous SNV 0.627 3 27 hm5C_associated_SNPs_29547 0 0 1 1 1 Nucleus 1 0.500231643921121 1 0.999536712157759 hm5C_site_29795 DeepMRMD:1;iRNA_m5C:0.999536712157759 29796 chr15 63019354 63019354 1 + G C LUSC 63019352 + 63019332 63019372 41 GCTCCTCCATGGCACAGCTGCTGACCTGTGCTGCTCAAGGC GCTCCTCCATGGCACAGCTGCTCACCTGTGCTGCTCAAGGC < 41bp 1 0.100293240199025 1 0.111057847738266 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63019352 chr15:63019354 synonymous SNV . 0 23 hm5C_associated_SNPs_29548 0 0 0 0 2 Nucleus 1 0.500232325844419 1 0.999535348311161 hm5C_site_29796 DeepMRMD:1;iRNA_m5C:0.999535348311161 29797 chr22 36661498 36661498 1 + G T LUSC 36661494 + 36661474 36661514 41 CCCTTCACAGAGGGAGGCAGCCTTGTACTCTTGGAACCTGG CCCTTCACAGAGGGAGGCAGCCTTTTACTCTTGGAACCTGG < 41bp 1 0.0639404128560798 1 0.0284768044948578 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APOL1 ENSG00000100342 CDS Human protein_coding chr22:36661494 chr22:36661498 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_29549 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29797 DeepMRMD:1;iRNA_m5C:0.999536712157815 29798 chr16 67914814 67914814 1 + G A LUSC 67914803 + 67914783 67914823 41 CCCCTCCCTCCTGGAGGCAGCCTTGACCCAGGAGGCCTCGA CCCCTCCCTCCTGGAGGCAGCCTTGACCCAGAAGGCCTCGA < 41bp 1 0.0404748635442943 1 0.116934031248093 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914803 chr16:67914814 nonsynonymous SNV 0.808 2 32 hm5C_associated_SNPs_29550 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29798 DeepMRMD:1;iRNA_m5C:0.999536712157815 29799 chr1 248039238 248039238 1 + G T LUSC 248039251 + 248039231 248039271 41 CACCCGAGTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA CACCCGATTCTGCTCTTGACCGCCGACCTGCGCAGTGTGCA < 41bp 1 0.686439155062555 1 0.360578656196594 experiment 0.627121689874889 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039251 chr1:248039238 nonsynonymous SNV 0.001 0 8 hm5C_associated_SNPs_29551 0 0 0 0 1 Cytosol 1 0.500231662942435 1 0.999536674115131 hm5C_site_29799 DeepMRMD:1;iRNA_m5C:0.999536674115131 29800 chr19 757477 757477 1 + G T LUSC 757482 + 757462 757502 41 CCCCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGG CCCCGGCCCACCTCGTTCCACGCCCCTGGAGGAGAACGTGG < 41bp 1 0.31009944079168 1 0.0502500534057617 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757482 chr19:757477 synonymous SNV . 0 16 hm5C_associated_SNPs_29552 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29800 DeepMRMD:1;iRNA_m5C:0.999536712157815 29801 chr19 757477 757477 1 + G T LUSC 757484 + 757464 757504 41 CCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTT CCGGCCCACCTCGTTCCACGCCCCTGGAGGAGAACGTGGTT < 41bp 1 0.187576878003097 1 0.14730316400528 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757484 chr19:757477 synonymous SNV . 0 14 hm5C_associated_SNPs_29553 0 0 0 0 0 nucleus 1 0.500231643921085 1 0.999536712157829 hm5C_site_29801 DeepMRMD:1;iRNA_m5C:0.999536712157829 29802 chr19 757477 757477 1 + G T LUSC 757485 + 757465 757505 41 CGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTG CGGCCCACCTCGTTCCACGCCCCTGGAGGAGAACGTGGTTG < 41bp 1 0.139446572480855 1 0.387875199317932 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757485 chr19:757477 synonymous SNV . 0 13 hm5C_associated_SNPs_29554 0 0 0 0 0 nucleus 1 0.500231643807909 1 0.999536712384183 hm5C_site_29802 DeepMRMD:1;iRNA_m5C:0.999536712384183 29803 chr19 757477 757477 1 + G T LUSC 757486 + 757466 757506 41 GGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTGA GGCCCACCTCGTTCCACGCCCCTGGAGGAGAACGTGGTTGA < 41bp 1 0.222157433101604 1 0.254034817218781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757486 chr19:757477 synonymous SNV . 0 12 hm5C_associated_SNPs_29555 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29803 DeepMRMD:1;iRNA_m5C:0.999536712157815 29804 chr3 172098776 172098776 1 + G A LUSC 172098759 + 172098739 172098779 41 GTGGATTTGTATTTCAGCACCTCGAGTAACACAGTTAGAAG GTGGATTTGTATTTCAGCACCTCGAGTAACACAGTTAAAAG < 41bp 1 0.557682772798231 1 0.711081624031067 experiment 0.884634454403538 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172098759 chr3:172098776 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_29556 0 0 0 0 1 Nucleus 1 0.500231862265728 0.577836751937866 0.999536275468543 hm5C_site_29804 DeepMRMD:0.577836751937866;iRNA_m5C:0.999536275468543 29805 chr3 172098776 172098776 1 + G A LUSC 172098770 + 172098750 172098790 41 TTTCAGCACCTCGAGTAACACAGTTAGAAGGAAATTCATGT TTTCAGCACCTCGAGTAACACAGTTAAAAGGAAATTCATGT < 41bp 1 0.104367069434109 1 0.486210852861404 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172098770 chr3:172098776 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_29557 0 0 0 0 1 Nucleus 1 0.500231643920752 1 0.999536712158495 hm5C_site_29805 DeepMRMD:1;iRNA_m5C:0.999536712158495 29806 chr7 142459707 142459707 1 + C T LUSC 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCTG < 41bp 1 0.661758210155566 1 0.299792140722275 experiment 0.676483579688869 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459707 nonsynonymous SNV 0.007 2 40 hm5C_associated_SNPs_29558 0 0 0 0 1 Cytosol 1 0.500231642731697 1 0.999536714536606 hm5C_site_29806 DeepMRMD:1;iRNA_m5C:0.999536714536606 29807 chr7 142459707 142459707 1 + C T LUSC 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCAGCCAAGATCATCTGCCACC < 41bp 1 0.548314810416288 1 0.055424690246582 experiment 0.903370379167423 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459707 nonsynonymous SNV 0.007 2 35 hm5C_associated_SNPs_29559 0 0 0 0 1 Cytosol 1 0.500231686925505 1 0.99953662614899 hm5C_site_29807 DeepMRMD:1;iRNA_m5C:0.99953662614899 29808 chr7 142459707 142459707 1 + C T LUSC 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAGATCATCTGCCACCCCC < 41bp 1 0.406324571229584 1 0.370669066905975 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459707 nonsynonymous SNV 0.007 2 32 hm5C_associated_SNPs_29560 0 0 0 0 1 Cytosol 1 0.500231628806076 1 0.999536742387847 hm5C_site_29808 DeepMRMD:1;iRNA_m5C:0.999536742387847 29809 chr7 142459707 142459707 1 + C T LUSC 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATCTGCCACCCCCAATACGA < 41bp 1 0.385964893804363 1 0.0970388948917389 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459707 nonsynonymous SNV 0.007 2 25 hm5C_associated_SNPs_29561 0 0 0 0 1 Cytosol 1 0.500231644217725 1 0.999536711564549 hm5C_site_29809 DeepMRMD:1;iRNA_m5C:0.999536711564549 29810 chr7 142459707 142459707 1 + C T LUSC 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATCTGCCACCCCCAATACGACAG < 41bp 1 0.501179004794307 1 0.425574719905853 experiment 0.997641990411385 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459707 nonsynonymous SNV 0.007 2 22 hm5C_associated_SNPs_29562 0 0 0 0 1 Cytosol 1 0.500231629092052 1 0.999536741815895 hm5C_site_29810 DeepMRMD:1;iRNA_m5C:0.999536741815895 29811 chr7 142459707 142459707 1 + C T LUSC 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATCTGCCACCCCCAATACGACAGGAA < 41bp 1 0.104773753484887 1 0.089442253112793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459707 nonsynonymous SNV 0.007 2 19 hm5C_associated_SNPs_29563 0 0 0 0 1 Cytosol 1 0.500231643929071 1 0.999536712141858 hm5C_site_29811 DeepMRMD:1;iRNA_m5C:0.999536712141858 29812 chr7 142459707 142459707 1 + C T LUSC 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATCTGCCACCCCCAATACGACAGGAAG < 41bp 1 0.237654604136094 1 0.146165400743484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459707 nonsynonymous SNV 0.007 2 18 hm5C_associated_SNPs_29564 0 0 0 0 1 Cytosol 1 0.500231643924023 1 0.999536712151954 hm5C_site_29812 DeepMRMD:1;iRNA_m5C:0.999536712151954 29813 chr7 142459707 142459707 1 + C T LUSC 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATCTGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.161992476678598 1 0.113966912031174 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459707 nonsynonymous SNV 0.007 2 16 hm5C_associated_SNPs_29565 0 0 0 0 1 Cytosol 1 0.500231643921105 1 0.99953671215779 hm5C_site_29813 DeepMRMD:1;iRNA_m5C:0.99953671215779 29814 chr7 142459707 142459707 1 + C T LUSC 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATCATCTGCCACCCCCAATACGACAGGAAGACT < 41bp 1 0.482583809916338 1 0.622278809547424 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459707 nonsynonymous SNV 0.007 2 15 hm5C_associated_SNPs_29566 0 0 0 0 1 Cytosol 1 0.500231643921092 0.755442380905152 0.999536712157815 hm5C_site_29814 DeepMRMD:0.755442380905152;iRNA_m5C:0.999536712157815 29815 chr7 142459707 142459707 1 + C T LUSC 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATCTGCCACCCCCAATACGACAGGAAGACTC < 41bp 1 0.489503191020522 1 0.186722964048386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459707 nonsynonymous SNV 0.007 2 14 hm5C_associated_SNPs_29567 0 0 0 0 1 Cytosol 1 0.500231643907629 1 0.999536712184742 hm5C_site_29815 DeepMRMD:1;iRNA_m5C:0.999536712184742 29816 chr7 142459707 142459707 1 + C T LUSC 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATCTGCCACCCCCAATACGACAGGAAGACTCT < 41bp 1 0.235824232222396 1 0.436260938644409 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459707 nonsynonymous SNV 0.007 2 13 hm5C_associated_SNPs_29568 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29816 DeepMRMD:1;iRNA_m5C:0.999536712157815 29817 chr7 142459707 142459707 1 + C T LUSC 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATCTGCCACCCCCAATACGACAGGAAGACTCTG < 41bp 1 0.420717089559258 1 0.166636049747467 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459707 nonsynonymous SNV 0.007 2 12 hm5C_associated_SNPs_29569 0 0 0 0 1 Cytosol 1 0.500231632007178 1 0.999536735985644 hm5C_site_29817 DeepMRMD:1;iRNA_m5C:0.999536735985644 29818 chr4 3418748 3418748 1 + C T LUSC 3418764 + 3418744 3418784 41 GCAGCAGGTCCCCAGCAGCCCGGCTTCCAAGCACAGCCTCG GCAGTAGGTCCCCAGCAGCCCGGCTTCCAAGCACAGCCTCG < 41bp 1 0.581492365811878 1 0.281760782003403 experiment 0.837015268376243 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3418764 chr4:3418748 stopgain 0.927 1 5 hm5C_associated_SNPs_29570 0 0 0 0 1 Nucleus 1 0.500231643925878 1 0.999536712148244 hm5C_site_29818 DeepMRMD:1;iRNA_m5C:0.999536712148244 29819 chr14 97002284 97002284 1 + G T LUSC 97002283 + 97002263 97002303 41 ATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAA ATACCCACAACAGAACTCCACTTACAATGTGTCCGTTTCAA < 41bp 1 0.0761955353660848 1 0.0288387835025787 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97002283 chr14:97002284 synonymous SNV . 0 22 hm5C_associated_SNPs_29571 0 0 1 0 2 Ribosome 1 0.50023183394276 1 0.999536332114479 hm5C_site_29819 DeepMRMD:1;iRNA_m5C:0.999536332114479 29820 chr7 44836390 44836390 1 + G C LUSC 44836378 + 44836358 44836398 41 TCGACGGCGAGCCCTTGGGCCGCGTCTCCTTTGAGGTCGGG TCGACGGCGAGCCCTTGGGCCGCGTCTCCTTTCAGGTCGGG < 41bp 1 0.597330269853016 1 0.202985972166061 experiment 0.805339460293969 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPIA ENSG00000196262 CDS Human protein_coding chr7:44836378 chr7:44836390 nonsynonymous SNV 0.965 1 33 hm5C_associated_SNPs_29572 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29820 DeepMRMD:1;iRNA_m5C:0.999536712157815 29821 chr20 5163061 5163061 1 + C T LUSC 5163068 + 5163048 5163088 41 TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC TACTGAGTCTGGTTAAGAAGCATTATCGACTGCAGTTCTAC < 41bp 1 0.176488383913891 1 0.0352522730827332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDS2 ENSG00000101290 CDS Human protein_coding chr20:5163068 chr20:5163061 synonymous SNV . 0 14 hm5C_associated_SNPs_29573 0 0 1 1 2 chromatin 1 0.500232241173173 1 0.999535517653653 hm5C_site_29821 DeepMRMD:1;iRNA_m5C:0.999535517653653 29822 chr20 47896871 47896871 1 + G A LUSC 47896873 + 47896853 47896893 41 CCTGCTGGCATATATGATGACTTAGCTTTTTTCCCCGACAG CCTGCTGGCATATATGATAACTTAGCTTTTTTCCCCGACAG < 41bp 1 0.191162886396374 1 0.0591482520103455 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896873 chr20:47896871 . . 0 19 hm5C_associated_SNPs_29574 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29822 DeepMRMD:1;iRNA_m5C:0.999536712157815 29823 chr20 47896871 47896871 1 + G A LUSC 47896878 + 47896858 47896898 41 TGGCATATATGATGACTTAGCTTTTTTCCCCGACAGATCGA TGGCATATATGATAACTTAGCTTTTTTCCCCGACAGATCGA < 41bp 1 0.0505736390366663 1 0.136015772819519 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896878 chr20:47896871 . . 0 14 hm5C_associated_SNPs_29575 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29823 DeepMRMD:1;iRNA_m5C:0.999536712157815 29824 chr20 47896871 47896871 1 + G A LUSC 47896885 + 47896865 47896905 41 TATGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTT TATGATAACTTAGCTTTTTTCCCCGACAGATCGACTATGTT < 41bp 1 0.183039975445097 1 0.0618172883987427 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896885 chr20:47896871 . . 0 7 hm5C_associated_SNPs_29576 0 0 1 0 0 unknown 1 0.500231643921119 1 0.999536712157762 hm5C_site_29824 DeepMRMD:1;iRNA_m5C:0.999536712157762 29825 chr20 47896871 47896871 1 + G A LUSC 47896886 + 47896866 47896906 41 ATGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTG ATGATAACTTAGCTTTTTTCCCCGACAGATCGACTATGTTG < 41bp 1 0.457672725494734 1 0.12318366765976 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896886 chr20:47896871 . . 0 6 hm5C_associated_SNPs_29577 0 0 1 0 0 unknown 1 0.500231644013247 1 0.999536711973505 hm5C_site_29825 DeepMRMD:1;iRNA_m5C:0.999536711973505 29826 chr20 47896871 47896871 1 + G A LUSC 47896887 + 47896867 47896907 41 TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGA TGATAACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGA < 41bp 1 0.0572422971344987 1 0.0715912878513336 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896887 chr20:47896871 . . 0 5 hm5C_associated_SNPs_29578 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_29826 DeepMRMD:1;iRNA_m5C:0.999536712157815 29827 chr17 38416815 38416815 1 + G A LUSC 38416799 + 38416779 38416819 41 TCCTCCAGGCAAACACAGAGCAGCCCAAGCTGAGTAGAGAT TCCTCCAGGCAAACACAGAGCAGCCCAAGCTGAGTAAAGAT < 41bp 1 0.19874453398372 1 0.227862775325775 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38416799 chr17:38416815 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_29579 0 0 1 0 2 Ribosome 1 0.500230962981699 1 0.999538074036603 hm5C_site_29827 DeepMRMD:1;iRNA_m5C:0.999538074036603 29828 chr4 155665970 155665970 1 + C T LUSC 155665967 + 155665947 155665987 41 CTGTGGAACAACTGCGAGCACTTCGTGACCTACTGCAGATA CTGTGGAACAACTGCGAGCACTTTGTGACCTACTGCAGATA < 41bp 1 0.213964239482808 1 0.0282493233680725 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRAT ENSG00000121207 CDS Human protein_coding chr4:155665967 chr4:155665970 synonymous SNV . 0 24 hm5C_associated_SNPs_29580 0 0 0 0 1 Nucleus 1 0.500231998508469 1 0.999536002983062 hm5C_site_29828 DeepMRMD:1;iRNA_m5C:0.999536002983062 29829 chr11 61404877 61404877 1 + C A LUSC 61404895 + 61404875 61404915 41 ATCGACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGAC ATAGACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGAC < 41bp 1 0.23848810778708 1 0.159991472959518 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404895 chr11:61404877 . . 0 3 hm5C_associated_SNPs_29581 0 0 0 0 0 unknown 1 0.500229238660415 1 0.999541522679169 hm5C_site_29829 DeepMRMD:1;iRNA_m5C:0.999541522679169 29830 chr11 65273295 65273295 1 + A G LUSC 65273280 + 65273260 65273300 41 GTGACTAAAACCAACTTAAACCAGTAAGTGGAGAAATAACA GTGACTAAAACCAACTTAAACCAGTAAGTGGAGAAGTAACA < 41bp 1 0.518909219423036 1 0.158738791942596 experiment 0.962181561153927 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273280 chr11:65273295 . . 0 36 hm5C_associated_SNPs_29582 0 0 1 1 0 unknown 1 0.500231647767456 1 0.999536704465087 hm5C_site_29830 DeepMRMD:1;iRNA_m5C:0.999536704465087 29831 chrX 47424408 47424408 1 + G T LUSC 47424395 + 47424375 47424415 41 TGGCATCAGGTACGGAAGACCTTCTTCAGCCTGGCGTTCTG TGGCATCAGGTACGGAAGACCTTCTTCAGCCTGTCGTTCTG < 41bp 1 0.31014858940381 1 0.338581085205078 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 CDS Human protein_coding chrX:47424395 chrX:47424408 nonsynonymous SNV 0.995 2 34 hm5C_associated_SNPs_29583 0 0 1 1 2 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_29831 DeepMRMD:1;iRNA_m5C:0.999536712157817 29832 chr5 140741626 140741626 1 + C A LUSC 140741612 + 140741592 140741632 41 TGCCTTGGGCGACAGGGACGCGGCCCGCCAGCGCCTGCTGG TGCCTTGGGCGACAGGGACGCGGCCCGCCAGCGCATGCTGG < 41bp 1 0.339312093655334 1 0.560890078544617 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741612 chr5:140741626 nonsynonymous SNV 0.994 3 35 hm5C_associated_SNPs_29584 0 0 0 0 0 exosome 1 0.500231643921091 0.878219842910766 0.999536712157818 hm5C_site_29832 DeepMRMD:0.878219842910766;iRNA_m5C:0.999536712157818 29833 chr1 110210760 110210760 1 + G A LUSC 110210743 + 110210723 110210763 41 ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTGGAA ACAGCAACCAGCACCATGCCCATGACACTGGGGTACTAGAA < 41bp 1 0.640553731489837 1 0.138470262289047 experiment 0.718892537020326 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110210743 chr1:110210760 stopgain 0.100 0 38 hm5C_associated_SNPs_29585 0 0 1 0 1 Cytosol 1 0.500231643921139 1 0.999536712157723 hm5C_site_29833 DeepMRMD:1;iRNA_m5C:0.999536712157723 29834 chr14 93125792 93125792 1 + C T LUSC 93125812 + 93125792 93125832 41 CTCCATGGCCCTCGGCAACCCAGGTCAGTGGGCAGCCGGGA TTCCATGGCCCTCGGCAACCCAGGTCAGTGGGCAGCCGGGA < 41bp 1 0.540412733834254 1 0.582142949104309 experiment 0.919174532331492 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93125812 chr14:93125792 synonymous SNV . 0 1 hm5C_associated_SNPs_29586 0 0 0 0 1 cytosol 1 0.500231643921092 0.835714101791382 0.999536712157815 hm5C_site_29834 DeepMRMD:0.835714101791382;iRNA_m5C:0.999536712157815 29835 chr10 75519898 75519898 1 + C A LUSC 75519908 + 75519888 75519928 41 GATCCAGACTCCCCAGCGATCTGCCCCATCACAGGCCTCCA GATCCAGACTACCCAGCGATCTGCCCCATCACAGGCCTCCA < 41bp 1 0.437209074566109 1 0.542560458183289 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75519908 chr10:75519898 nonsynonymous SNV 0.983 1 11 hm5C_associated_SNPs_29587 0 0 1 0 0 Nucleus 1 0.500231600960863 0.914879083633422 0.999536798078273 hm5C_site_29835 DeepMRMD:0.914879083633422;iRNA_m5C:0.999536798078273 29836 chr5 150867564 150867564 1 + C T LUSC 150867545 + 150867525 150867565 41 ATGTCCTCTCTCCCTGCAGGCATCTTGGCCATCCTCATCCC ATGTCCTCTCTCCCTGCAGGCATCTTGGCCATCCTCATCTC < 41bp 1 0.203473702622203 1 0.026957631111145 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867545 chr5:150867564 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_29588 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644134848 1 0.999536711730304 hm5C_site_29836 DeepMRMD:1;iRNA_m5C:0.999536711730304 29837 chr5 150867564 150867564 1 + C T LUSC 150867554 + 150867534 150867574 41 CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCTGGA CTCCCTGCAGGCATCTTGGCCATCCTCATCTCCCGCCTGGA < 41bp 1 0.0729171319929254 1 0.0232105851173401 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867554 chr5:150867564 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_29589 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643919567 1 0.999536712160865 hm5C_site_29837 DeepMRMD:1;iRNA_m5C:0.999536712160865 29838 chr11 60610161 60610161 1 + C T LUSC 60610163 + 60610143 60610183 41 ACCCAGGGCACCTGGCTCCCCCCGGGGTCAGCATGAGCCGA ACCCAGGGCACCTGGCTCTCCCCGGGGTCAGCATGAGCCGA < 41bp 1 0.638539501461539 1 0.807354331016541 experiment 0.722920997076922 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC86 ENSG00000110104 CDS Human protein_coding chr11:60610163 chr11:60610161 synonymous SNV . 0 19 hm5C_associated_SNPs_29590 0 0 0 0 0 Ribosome 1 0.500231643921092 0.385291337966918 0.999536712157815 hm5C_site_29838 DeepMRMD:0.385291337966918;iRNA_m5C:0.999536712157815 29839 chr1 878367 878367 1 + G A LUSC 878356 + 878336 878376 41 CAAGCTCCAGCTGGAGGGGCCGGCGCCGAGGGGAAGGGGCT CAAGCTCCAGCTGGAGGGGCCGGCGCCGAGGAGAAGGGGCT < 41bp 1 0.588491961657634 1 0.641819953918457 experiment 0.823016076684732 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:878356 chr1:878367 nonsynonymous SNV 0.882 1 32 hm5C_associated_SNPs_29591 0 0 1 0 1 nucleus 1 0.500231643925627 0.716360092163086 0.999536712148746 hm5C_site_29839 DeepMRMD:0.716360092163086;iRNA_m5C:0.999536712148746 29840 chr22 18979458 18979458 1 + G A LUSC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGCAAACCAAGCCTGTCTGTGTGTTCTGGAAC < 41bp 1 0.093394024631508 1 0.0525517165660858 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979458 . . 0 13 hm5C_associated_SNPs_29592 0 0 0 0 1 unknown 1 0.50023302413132 1 0.99953395173736 hm5C_site_29840 DeepMRMD:1;iRNA_m5C:0.99953395173736 29841 chr12 123102894 123102894 1 + C T LUSC 123102893 + 123102873 123102913 41 TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGCGTGG TGGACTTGTTTTCACAGGTTCTCTACTTCAGCAAAGCGTGG < 41bp 1 0.162324347925938 1 0.24571904540062 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123102893 chr12:123102894 nonsynonymous SNV 0.886 4 22 hm5C_associated_SNPs_29593 0 0 1 0 2 Nucleus 1 0.500231575555571 1 0.999536848888857 hm5C_site_29841 DeepMRMD:1;iRNA_m5C:0.999536848888857 29842 chr12 21205126 21205126 1 + C A LUSC 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGGAACCCGTCTGTGGAAAAAATGGAAT < 41bp 1 0.390629881546839 1 0.153447806835175 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205126 nonsynonymous SNV 0.444 0 33 hm5C_associated_SNPs_29594 0 0 0 0 2 nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_29842 DeepMRMD:1;iRNA_m5C:0.999536712157818 29843 chr1 113238131 113238131 1 + C T LUSC 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC CCGGGTCCACCTTTCTAGCTCCATCTACCGCCTCCTGGCCC < 41bp 1 0.0512943883310397 1 0.0568924248218536 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238131 nonsynonymous SNV 0.996 1 14 hm5C_associated_SNPs_29595 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29843 DeepMRMD:1;iRNA_m5C:0.999536712157815 29844 chr1 113238131 113238131 1 + C T LUSC 113238149 + 113238129 113238169 41 TTCCTAGCTCCATCTACCGCCTCCTGGCCCCCAGCAGGGAC TTTCTAGCTCCATCTACCGCCTCCTGGCCCCCAGCAGGGAC < 41bp 1 0.327410225945377 1 0.271610587835312 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238149 chr1:113238131 nonsynonymous SNV 0.996 1 3 hm5C_associated_SNPs_29596 0 0 1 0 2 Cytosol 1 0.500231643921011 1 0.999536712157977 hm5C_site_29844 DeepMRMD:1;iRNA_m5C:0.999536712157977 29845 chr12 111744785 111744785 1 + G A LUSC 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGAACA < 41bp 1 0.270913554945822 1 0.163336127996445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744785 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_29598 0 0 0 0 1 exosome 1 0.50023164392109 1 0.999536712157821 hm5C_site_29845 DeepMRMD:1;iRNA_m5C:0.999536712157821 29846 chr12 111744785 111744785 1 + G A LUSC 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGAACAG < 41bp 1 0.269887610638006 1 0.423202216625214 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744785 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_29599 0 0 0 0 1 exosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_29846 DeepMRMD:1;iRNA_m5C:0.999536712157808 29847 chr12 111744785 111744785 1 + G A LUSC 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCCGCGCTGGCCTCCAAGAACAGGGAGATCC < 41bp 1 0.0302510383705572 1 0.151288747787476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744785 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_29600 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29847 DeepMRMD:1;iRNA_m5C:0.999536712157815 29848 chr12 111744785 111744785 1 + G A LUSC 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCCGCGCTGGCCTCCAAGAACAGGGAGATCCT < 41bp 1 0.530123994854167 1 0.971605896949768 experiment 0.939752010291667 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744785 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_29601 0 0 0 0 1 exosome 1 0.500231643921166 0.0567882061004641 0.999536712157667 hm5C_site_29848 DeepMRMD:0.0567882061004641;iRNA_m5C:0.999536712157667 29849 chr12 111744785 111744785 1 + G A LUSC 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCCGCGCTGGCCTCCAAGAACAGGGAGATCCTGC < 41bp 1 0.208909543352439 1 0.835913717746735 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744785 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_29602 0 0 0 0 1 exosome 1 0.500231643921092 0.32817256450653 0.999536712157815 hm5C_site_29849 DeepMRMD:0.32817256450653;iRNA_m5C:0.999536712157815 29850 chr12 111744785 111744785 1 + G A LUSC 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCCGCGCTGGCCTCCAAGAACAGGGAGATCCTGCG < 41bp 1 0.519492773338844 1 0.611843228340149 experiment 0.961014453322311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744785 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_29603 0 0 0 0 1 exosome 1 0.500231643921098 0.776313543319702 0.999536712157804 hm5C_site_29850 DeepMRMD:0.776313543319702;iRNA_m5C:0.999536712157804 29851 chr19 6833249 6833249 1 + C T LUSC 6833263 + 6833243 6833283 41 GATGTTCTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC GATGTTTTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC < 41bp 1 0.396777041033155 1 0.195107340812683 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833263 chr19:6833249 synonymous SNV . 0 7 hm5C_associated_SNPs_29604 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_29851 DeepMRMD:1;iRNA_m5C:0.999536712157815 29852 chrX 64956717 64956717 1 + T A LUSC 64956736 + 64956716 64956756 41 TTGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG TAGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG < 41bp 1 0.339510638583975 1 0.319688260555267 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956736 chrX:64956717 synonymous SNV . 0 2 hm5C_associated_SNPs_29605 0 0 1 0 2 Ribosome 1 0.500231643920596 1 0.999536712158808 hm5C_site_29852 DeepMRMD:1;iRNA_m5C:0.999536712158808 29853 chr17 29857360 29857360 1 + G T LUSC 29857365 + 29857345 29857385 41 AGAATTATAAGCTGCGGGATCAGAACGACGACTTGAATGGG AGAATTATAAGCTGCTGGATCAGAACGACGACTTGAATGGG < 41bp 1 0.363504170548401 1 0.613048017024994 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29857365 chr17:29857360 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_29606 0 0 1 0 1 Ribosome 1 0.500231819198286 0.773903965950012 0.999536361603427 hm5C_site_29853 DeepMRMD:0.773903965950012;iRNA_m5C:0.999536361603427 29854 chr11 6629297 6629297 1 + C G LUSC 6629293 + 6629273 6629313 41 AAGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCC AAGGGACGATCATGGCTTCTCCCCGTTGCACTGGGCCTGCC < 41bp 1 0.553150580240017 1 0.383931756019592 experiment 0.893698839519966 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629293 chr11:6629297 synonymous SNV . 0 25 hm5C_associated_SNPs_29608 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643842726 1 0.999536712314547 hm5C_site_29854 DeepMRMD:1;iRNA_m5C:0.999536712314547 29855 chr11 6629297 6629297 1 + C G LUSC 6629294 + 6629274 6629314 41 AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG AGGGACGATCATGGCTTCTCCCCGTTGCACTGGGCCTGCCG < 41bp 1 0.343220885566979 1 0.121320724487305 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629294 chr11:6629297 synonymous SNV . 0 24 hm5C_associated_SNPs_29609 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644066667 1 0.999536711866666 hm5C_site_29855 DeepMRMD:1;iRNA_m5C:0.999536711866666 29856 chr16 28847784 28847784 1 + G T LUSC 28847774 + 28847754 28847794 41 CCCACTGCCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCT CCCACTGCCTCCCCAGCTCTCAGTGACCCCTACTGTCTCCT < 41bp 1 0.576624949944871 1 0.743937075138092 experiment 0.846750100110257 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847774 chr16:28847784 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_29610 0 0 1 0 1 Cytosol 1 0.500231643929471 0.512125849723816 0.999536712141057 hm5C_site_29856 DeepMRMD:0.512125849723816;iRNA_m5C:0.999536712141057 29857 chr2 56419919 56419919 1 + A T LUSC 56419925 + 56419905 56419945 41 GGCCAGCCTGTGCCAACTCACAGCCTCCACCGCACCCTACG GGCCAGCCTGTGCCTACTCACAGCCTCCACCGCACCCTACG < 41bp 1 0.600033847588767 1 0.471610903739929 experiment 0.799932304822465 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56419925 chr2:56419919 nonsynonymous SNV 0.864 2 15 hm5C_associated_SNPs_29611 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29857 DeepMRMD:1;iRNA_m5C:0.999536712157815 29858 chr16 12618661 12618661 1 + A G LUSC 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCCGAGTTCGCTGCCAGCCCCGAGAAGGAGACCCTCATCC < 41bp 1 0.256635803704083 1 0.530088841915131 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618661 nonsynonymous SNV 0.973 0 23 hm5C_associated_SNPs_29612 0 0 0 0 1 Nucleus 1 0.500231643921089 0.939822316169738 0.999536712157822 hm5C_site_29858 DeepMRMD:0.939822316169738;iRNA_m5C:0.999536712157822 29859 chr10 6265947 6265947 1 + C T LUSC 6265930 + 6265910 6265950 41 TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTCTTC TTCAATTTCAGAGGAGATGCCCTACCTGAAATGCCCTTTTC < 41bp 1 0.0340215814792394 1 0.0736582279205322 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6265930 chr10:6265947 nonsynonymous SNV 0.603 4 38 hm5C_associated_SNPs_29613 0 0 1 0 2 Ribosome 1 0.500231657768335 1 0.999536684463329 hm5C_site_29859 DeepMRMD:1;iRNA_m5C:0.999536684463329 29860 chr11 65632560 65632560 1 + C T LUSC 65632544 + 65632524 65632564 41 GGGAACCCTGAATCAGGGGCCATGACCTCTCCAAACCCTCT GGGAACCCTGAATCAGGGGCCATGACCTCTCCAAACTCTCT < 41bp 1 0.207596598598358 1 0.112295538187027 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MUS81 ENSG00000172732 CDS Human protein_coding chr11:65632544 chr11:65632560 nonsynonymous SNV 0.744 1 37 hm5C_associated_SNPs_29614 0 0 1 0 2 Ribosome 1 0.500231643917129 1 0.999536712165742 hm5C_site_29860 DeepMRMD:1;iRNA_m5C:0.999536712165742 29861 chr8 142176444 142176444 1 + C T LUSC 142176432 + 142176412 142176452 41 TGCCATGCCTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC TGCCATGCCTGAGCTGGCACCCAGGAACTCCTTGCTCCGGC < 41bp 1 0.45974036406908 1 0.879493117332458 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142176432 chr8:142176444 nonsynonymous SNV 0.172 1 33 hm5C_associated_SNPs_29615 0 0 0 0 1 Nucleus 1 0.500231643874869 0.241013765335084 0.999536712250261 hm5C_site_29861 DeepMRMD:0.241013765335084;iRNA_m5C:0.999536712250261 29862 chrX 37984564 37984564 1 + G A LUSC 37984551 + 37984531 37984571 41 GATTGTTTTTTCTCATGCAGCTACCTGCTCCCTGATGATAG GATTGTTTTTTCTCATGCAGCTACCTGCTCCCTAATGATAG < 41bp 1 0.0967601155026433 1 0.116215795278549 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37984551 chrX:37984564 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_29616 0 0 0 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29862 DeepMRMD:1;iRNA_m5C:0.999536712157815 29863 chr12 79689885 79689885 1 + G A LUSC 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CACCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG < 41bp 1 0.170811932923981 1 0.205603539943695 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689885 nonsynonymous SNV 0.964 2 2 hm5C_associated_SNPs_29617 0 0 0 0 1 Cytosol 1 0.500231643921111 1 0.999536712157777 hm5C_site_29863 DeepMRMD:1;iRNA_m5C:0.999536712157777 29864 chr6 7572250 7572250 1 + A T LUSC 7572244 + 7572224 7572264 41 AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGATC AGGATGACTCTCAAAAACCTCCCTCTTGCAGACCAGGGATC < 41bp 1 0.0436370583322328 1 0.0381768345832825 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572244 chr6:7572250 synonymous SNV . 0 27 hm5C_associated_SNPs_29618 0 0 1 0 1 Nucleus 1 0.500231643920947 1 0.999536712158106 hm5C_site_29864 DeepMRMD:1;iRNA_m5C:0.999536712158106 29865 chr12 112926259 112926259 1 + C T LUSC 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGTCGGACAGGGACGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.16704125267352 1 0.0265071988105774 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926259 synonymous SNV . 0 6 hm5C_associated_SNPs_29619 0 0 1 0 2 Ribosome 1 0.500231575922999 1 0.999536848154002 hm5C_site_29865 DeepMRMD:1;iRNA_m5C:0.999536848154002 29866 chr2 71654035 71654035 1 + G A LUSC 71654019 + 71653999 71654039 41 CAGTGGCTGAAGAACAAGATCTCCTCAAACAGGAACGCTTG CAGTGGCTGAAGAACAAGATCTCCTCAAACAGGAACACTTG < 41bp 1 0.391514860084859 1 0.299790173768997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71654019 chr2:71654035 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_29620 0 0 1 0 0 Nucleus 1 0.500231665619141 1 0.999536668761717 hm5C_site_29866 DeepMRMD:1;iRNA_m5C:0.999536668761717 29867 chr2 71654035 71654035 1 + G A LUSC 71654044 + 71654024 71654064 41 CAAACAGGAACGCTTGGTAACTGTGGATGAAATTGGAGAAG CAAACAGGAACACTTGGTAACTGTGGATGAAATTGGAGAAG < 41bp 1 0.406916739336242 1 0.271393835544586 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71654044 chr2:71654035 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_29621 0 0 1 0 0 Nucleus 1 0.50023164406616 1 0.999536711867679 hm5C_site_29867 DeepMRMD:1;iRNA_m5C:0.999536711867679 29868 chr16 88781041 88781041 1 + G A LUSC 88781052 + 88781032 88781072 41 TCTCTCCCAGATGCAGTCACCCATCCCCCTGACTGAGACCC TCTCTCCCAAATGCAGTCACCCATCCCCCTGACTGAGACCC < 41bp 1 0.0396104573919508 1 0.110013276338577 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781052 chr16:88781041 synonymous SNV . 0 10 hm5C_associated_SNPs_29622 0 0 1 0 1 Cytosol 1 0.500231794981402 1 0.999536410037197 hm5C_site_29868 DeepMRMD:1;iRNA_m5C:0.999536410037197 29869 chr1 44071241 44071241 1 + G T LUSC 44071222 + 44071202 44071242 41 GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGG GGTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGTG < 41bp 1 0.0910507091202528 1 0.035233199596405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071222 chr1:44071241 nonsynonymous SNV 0.785 2 40 hm5C_associated_SNPs_29623 0 0 1 0 2 Ribosome 1 0.500231668903895 1 0.99953666219221 hm5C_site_29869 DeepMRMD:1;iRNA_m5C:0.99953666219221 29870 chr1 44071241 44071241 1 + G T LUSC 44071223 + 44071203 44071243 41 GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGGGA GTTCTACATTGTTGTGGTGCCCATTGACCGTGTGGGCGTGA < 41bp 1 0.050551946011051 1 0.0714450478553772 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44071223 chr1:44071241 nonsynonymous SNV 0.785 2 39 hm5C_associated_SNPs_29624 0 0 1 0 2 Ribosome 1 0.500408192245215 1 0.999183615509571 hm5C_site_29870 DeepMRMD:1;iRNA_m5C:0.999183615509571 29871 chr7 77539631 77539631 1 + A G LUSC 77539642 + 77539622 77539662 41 AGATAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAA AGATAACACGCAAGAGGGAGCAGTTCAGAACCACGGTACAA < 41bp 1 0.28548608332486 1 0.278238534927368 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHTF2 ENSG00000006576 CDS Human protein_coding chr7:77539642 chr7:77539631 synonymous SNV . 0 10 hm5C_associated_SNPs_29625 0 0 1 0 1 Ribosome 1 0.500230612513046 1 0.999538774973909 hm5C_site_29871 DeepMRMD:1;iRNA_m5C:0.999538774973909 29872 chr8 48874090 48874090 1 + G T LUSC 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATTCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA < 41bp 1 0.131029166784271 1 0.085466057062149 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874090 nonsynonymous SNV 0.218 0 7 hm5C_associated_SNPs_29626 0 0 1 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29872 DeepMRMD:1;iRNA_m5C:0.999536712157815 29873 chr11 61404308 61404308 1 + G C LUSC 61404327 + 61404307 61404347 41 GGTGCTGATGGGCAAGAACGCCATGACGCGCAAGGCCATCC GCTGCTGATGGGCAAGAACGCCATGACGCGCAAGGCCATCC < 41bp 1 0.395589427029287 1 0.126435786485672 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404327 chr11:61404308 . . 0 2 hm5C_associated_SNPs_29627 0 0 0 0 0 unknown 1 0.500231886326614 1 0.999536227346771 hm5C_site_29873 DeepMRMD:1;iRNA_m5C:0.999536227346771 29874 chr10 43604511 43604511 1 + G T LUSC 43604501 + 43604481 43604521 41 CTGGTTCTCAACCGGAACCTCTCCATCTCGGAGAACCGCAC CTGGTTCTCAACCGGAACCTCTCCATCTCGTAGAACCGCAC < 41bp 1 0.624768546229765 1 0.962962031364441 experiment 0.75046290754047 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RET ENSG00000165731 CDS Human protein_coding chr10:43604501 chr10:43604511 stopgain 0.283 1 31 hm5C_associated_SNPs_29629 0 0 1 0 1 Cytosol 1 0.500231643872174 0.0740759372711179 0.999536712255652 hm5C_site_29874 DeepMRMD:0.0740759372711179;iRNA_m5C:0.999536712255652 29875 chr19 35741403 35741403 1 + A T LUSC 35741406 + 35741386 35741426 41 CCCCGGCCAGCGTCGACAACCAGCTCAATGCCCAGCTGGCA CCCCGGCCAGCGTCGACTACCAGCTCAATGCCCAGCTGGCA < 41bp 1 0.485143502652826 1 0.441006690263748 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741406 chr19:35741403 nonsynonymous SNV 0.947 3 18 hm5C_associated_SNPs_29630 0 0 1 0 0 chromatin 1 0.500231643921123 1 0.999536712157754 hm5C_site_29875 DeepMRMD:1;iRNA_m5C:0.999536712157754 29876 chr11 61632657 61632657 1 + C G LUSC 61632668 + 61632648 61632688 41 CAACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTG CAACTTACAGAAGATCGCCCCGCTGGTGAAGTCTCTATGTG < 41bp 1 0.369562681776624 1 0.167953670024872 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632668 chr11:61632657 nonsynonymous SNV 0.189 0 10 hm5C_associated_SNPs_29631 0 0 1 0 2 Ribosome 1 0.500218103890296 1 0.999563792219408 hm5C_site_29876 DeepMRMD:1;iRNA_m5C:0.999563792219408 29877 chr11 61632657 61632657 1 + C G LUSC 61632670 + 61632650 61632690 41 ACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC ACTTACAGAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC < 41bp 1 0.611377354051996 1 0.483208924531937 experiment 0.777245291896008 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632670 chr11:61632657 nonsynonymous SNV 0.189 0 8 hm5C_associated_SNPs_29632 0 0 1 0 2 Ribosome 1 0.500231511338047 1 0.999536977323905 hm5C_site_29877 DeepMRMD:1;iRNA_m5C:0.999536977323905 29878 chr19 35741402 35741402 1 + C A LUSC 35741406 + 35741386 35741426 41 CCCCGGCCAGCGTCGACAACCAGCTCAATGCCCAGCTGGCA CCCCGGCCAGCGTCGAAAACCAGCTCAATGCCCAGCTGGCA < 41bp 1 0.507914167838858 1 0.243911385536194 experiment 0.984171664322284 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741406 chr19:35741402 nonsynonymous SNV 0.848 1 17 hm5C_associated_SNPs_29633 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_29878 DeepMRMD:1;iRNA_m5C:0.999536712157815 29879 chr1 154960758 154960758 1 + G A LUSC 154960745 + 154960725 154960765 41 GTCCTCACAGCAGGGGGCATCGGCCCCACTCATGATGATGT GTCCTCACAGCAGGGGGCATCGGCCCCACTCATAATGATGT < 41bp 1 0.494390642560231 1 0.767724514007568 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154960745 chr1:154960758 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_29634 0 0 1 0 0 Cytosol 1 0.500231643921273 0.464550971984864 0.999536712157455 hm5C_site_29879 DeepMRMD:0.464550971984864;iRNA_m5C:0.999536712157455 29880 chr5 148712275 148712275 1 + C G LUSC 148712291 + 148712271 148712311 41 GGCTCTGGAAGAAGCCGTGGCCACCCTGGAAGCTCAGTGTC GGCTGTGGAAGAAGCCGTGGCCACCCTGGAAGCTCAGTGTC < 41bp 1 0.124707470497257 1 0.0725494623184204 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148712291 chr5:148712275 nonsynonymous SNV 0.908 1 5 hm5C_associated_SNPs_29635 0 0 0 0 1 exosome 1 0.500231643921084 1 0.999536712157831 hm5C_site_29880 DeepMRMD:1;iRNA_m5C:0.999536712157831 29881 chr10 135000076 135000076 1 + C A LUSC 135000066 + 135000046 135000086 41 TTCACACCCCAGCCAGGGGCCAGCAGAGGCCCCTGCAGACC TTCACACCCCAGCCAGGGGCCAGCAGAGGCACCTGCAGACC < 41bp 1 0.563852133199162 1 0.699704647064209 experiment 0.872295733601675 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135000066 chr10:135000076 synonymous SNV . 0 31 hm5C_associated_SNPs_29636 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.600590705871582 0.999536712157815 hm5C_site_29881 DeepMRMD:0.600590705871582;iRNA_m5C:0.999536712157815 29882 chr7 44796711 44796711 1 + C T LUSC 44796719 + 44796699 44796739 41 GGCGTGTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTT GGCGTGTACAGCTGCGGGGGCTACCCTGGGGCCCCCGGCTT < 41bp 1 0.293563619543049 1 0.11321297287941 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796719 chr7:44796711 nonsynonymous SNV 0.793 4 13 hm5C_associated_SNPs_29637 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29882 DeepMRMD:1;iRNA_m5C:0.999536712157815 29883 chr19 54649754 54649754 1 + C T LUSC 54649752 + 54649732 54649772 41 ACCACCTCCAGCTCTCCCATCCCGCCCAGCCCAGCCAACTG ACCACCTCCAGCTCTCCCATCCTGCCCAGCCCAGCCAACTG < 41bp 1 0.0858505121021195 1 0.518778920173645 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54649752 chr19:54649754 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_29638 0 0 1 0 1 Ribosome 1 0.500231643911573 0.96244215965271 0.999536712176853 hm5C_site_29883 DeepMRMD:0.96244215965271;iRNA_m5C:0.999536712176853 29884 chr7 129950677 129950677 1 + G C LUSC 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCCGAAGTGTACCATGGACCCCACCCCAATTCGGAAGTG < 41bp 1 0.537914295569734 1 0.0494748950004578 experiment 0.924171408860532 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950677 nonsynonymous SNV 0.786 0 27 hm5C_associated_SNPs_29639 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643917495 1 0.99953671216501 hm5C_site_29884 DeepMRMD:1;iRNA_m5C:0.99953671216501 29885 chr7 129950677 129950677 1 + G C LUSC 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCGAAGTGTACCATGGACCCCACCCCAATTCGGAAGTGG < 41bp 1 0.0624177677573814 1 0.0377354025840759 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950677 nonsynonymous SNV 0.786 0 26 hm5C_associated_SNPs_29640 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643796142 1 0.999536712407716 hm5C_site_29885 DeepMRMD:1;iRNA_m5C:0.999536712407716 29886 chr6 29911963 29911963 1 + G A LUSC 29911960 + 29911940 29911980 41 CATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCC CATGAGGCCACCCTGAGGTGCTGAGCCCTGGGCTTCTACCC < 41bp 1 0.525919600668168 1 0.0866284966468811 experiment 0.948160798663664 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911960 chr6:29911963 stopgain 0.085 0 24 hm5C_associated_SNPs_29641 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921098 1 0.999536712157803 hm5C_site_29886 DeepMRMD:1;iRNA_m5C:0.999536712157803 29887 chr3 47382151 47382151 1 + C T LUSC 47382146 + 47382126 47382166 41 TCCCTCAGCTCCGTGGAGACCTACTCACCTGAGACGGACAA TCCCTCAGCTCCGTGGAGACCTACTTACCTGAGACGGACAA < 41bp 1 0.391977597434814 1 0.280788242816925 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47382146 chr3:47382151 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_29642 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29887 DeepMRMD:1;iRNA_m5C:0.999536712157815 29888 chr11 45923588 45923588 1 + C A LUSC 45923602 + 45923582 45923622 41 GTGTCTCGATCATCCTCACCCCTGAAGACAGGTAAGTCAGG GTGTCTAGATCATCCTCACCCCTGAAGACAGGTAAGTCAGG < 41bp 1 0.145389035190418 1 0.382744669914246 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923602 chr11:45923588 synonymous SNV . 0 7 hm5C_associated_SNPs_29643 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643913633 1 0.999536712172735 hm5C_site_29888 DeepMRMD:1;iRNA_m5C:0.999536712172735 29889 chr5 153760011 153760011 1 + G A LUSC 153760010 + 153759990 153760030 41 ATCTCTTGGCTTCTTCAGACCGCATTGCTCGGAACCGCAAG ATCTCTTGGCTTCTTCAGACCACATTGCTCGGAACCGCAAG < 41bp 1 0.164119243544086 1 0.109533876180649 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760010 chr5:153760011 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_29644 0 0 1 0 1 Ribosome 1 0.500250826911542 1 0.999498346176916 hm5C_site_29889 DeepMRMD:1;iRNA_m5C:0.999498346176916 29890 chr5 153760011 153760011 1 + G A LUSC 153760024 + 153760004 153760044 41 TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC TCAGACCACATTGCTCGGAACCGCAAGACCATTGTGTGCCC < 41bp 1 0.35823072461201 1 0.125478118658066 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760024 chr5:153760011 nonsynonymous SNV 0.996 2 8 hm5C_associated_SNPs_29645 0 0 1 0 1 Ribosome 1 0.500231643787301 1 0.999536712425398 hm5C_site_29890 DeepMRMD:1;iRNA_m5C:0.999536712425398 29891 chr1 36755096 36755096 1 + G A LUSC 36755116 + 36755096 36755136 41 GGAGTCTTTCCCAGAGAGATCCAAAAAGGAAGATCGGGGCA AGAGTCTTTCCCAGAGAGATCCAAAAAGGAAGATCGGGGCA < 41bp 1 0.435511124567768 1 0.366958528757095 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36755116 chr1:36755096 synonymous SNV . 0 1 hm5C_associated_SNPs_29646 0 0 1 0 0 Nucleus 1 0.500231643921407 1 0.999536712157187 hm5C_site_29891 DeepMRMD:1;iRNA_m5C:0.999536712157187 29892 chr17 76060982 76060982 1 + G A LUSC 76061001 + 76060981 76061021 41 TGGCGCACCTGTTGCTGCCTCAGCCCTGTGCAAACCAGGTA TAGCGCACCTGTTGCTGCCTCAGCCCTGTGCAAACCAGGTA < 41bp 1 0.197256923680458 1 0.402330040931702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76061001 chr17:76060982 nonsynonymous SNV 0.014 0 2 hm5C_associated_SNPs_29647 0 0 1 0 1 chromatin 1 0.500231643965828 1 0.999536712068345 hm5C_site_29892 DeepMRMD:1;iRNA_m5C:0.999536712068345 29893 chr2 121554949 121554949 1 + G T LUSC 121554962 + 121554942 121554982 41 AAAAGTGGGATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG AAAAGTGTGATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG < 41bp 1 0.27582556405687 1 0.524482309818268 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLI2 ENSG00000074047 CDS Human protein_coding chr2:121554962 chr2:121554949 nonsynonymous SNV 0.858 0 8 hm5C_associated_SNPs_29648 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.951035380363464 0.999536712157815 hm5C_site_29893 DeepMRMD:0.951035380363464;iRNA_m5C:0.999536712157815 29894 chr12 863276 863276 1 + G C LUSC 863266 + 863246 863286 41 TGGGGAGCAAAGAGGAGCCGCCGCCGGCGAGAAGTGGCAGC TGGGGAGCAAAGAGGAGCCGCCGCCGGCGACAAGTGGCAGC < 41bp 1 0.11637970355976 1 0.106083810329437 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WNK1 ENSG00000060237 CDS Human protein_coding chr12:863266 chr12:863276 nonsynonymous SNV 0.867 0 31 hm5C_associated_SNPs_29650 0 0 1 0 0 Ribosome 1 0.500231644041667 1 0.999536711916666 hm5C_site_29894 DeepMRMD:1;iRNA_m5C:0.999536711916666 29895 chr12 863276 863276 1 + G C LUSC 863267 + 863247 863287 41 GGGGAGCAAAGAGGAGCCGCCGCCGGCGAGAAGTGGCAGCG GGGGAGCAAAGAGGAGCCGCCGCCGGCGACAAGTGGCAGCG < 41bp 1 0.57308697044417 1 0.508007645606995 experiment 0.853826059111659 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WNK1 ENSG00000060237 CDS Human protein_coding chr12:863267 chr12:863276 nonsynonymous SNV 0.867 0 30 hm5C_associated_SNPs_29651 0 0 1 0 0 Ribosome 1 0.500231643926693 0.98398470878601 0.999536712146613 hm5C_site_29895 DeepMRMD:0.98398470878601;iRNA_m5C:0.999536712146613 29896 chr12 863276 863276 1 + G C LUSC 863270 + 863250 863290 41 GAGCAAAGAGGAGCCGCCGCCGGCGAGAAGTGGCAGCGGCG GAGCAAAGAGGAGCCGCCGCCGGCGACAAGTGGCAGCGGCG < 41bp 1 0.566453009982677 1 0.910890340805054 experiment 0.867093980034646 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WNK1 ENSG00000060237 CDS Human protein_coding chr12:863270 chr12:863276 nonsynonymous SNV 0.867 0 27 hm5C_associated_SNPs_29652 0 0 1 0 0 Ribosome 1 0.500231643921085 0.178219318389892 0.999536712157829 hm5C_site_29896 DeepMRMD:0.178219318389892;iRNA_m5C:0.999536712157829 29897 chr12 863276 863276 1 + G C LUSC 863289 + 863269 863309 41 CCGGCGAGAAGTGGCAGCGGCGGCGGCAGCGCCAAGGAGCC CCGGCGACAAGTGGCAGCGGCGGCGGCAGCGCCAAGGAGCC < 41bp 1 0.503324955956327 1 0.781837344169617 experiment 0.993350088087345 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control WNK1 ENSG00000060237 CDS Human protein_coding chr12:863289 chr12:863276 nonsynonymous SNV 0.867 0 8 hm5C_associated_SNPs_29653 0 0 1 0 0 Ribosome 1 0.500231643921092 0.436325311660766 0.999536712157815 hm5C_site_29897 DeepMRMD:0.436325311660766;iRNA_m5C:0.999536712157815 29898 chr12 863276 863276 1 + G C LUSC 863295 + 863275 863315 41 AGAAGTGGCAGCGGCGGCGGCAGCGCCAAGGAGCCACAGGA ACAAGTGGCAGCGGCGGCGGCAGCGCCAAGGAGCCACAGGA < 41bp 1 0.458351528703867 1 0.824456572532654 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WNK1 ENSG00000060237 CDS Human protein_coding chr12:863295 chr12:863276 nonsynonymous SNV 0.867 0 2 hm5C_associated_SNPs_29655 0 0 1 0 0 Ribosome 1 0.500231643921093 0.351086854934692 0.999536712157815 hm5C_site_29898 DeepMRMD:0.351086854934692;iRNA_m5C:0.999536712157815 29899 chr7 98563377 98563377 1 + G C LUSC 98563380 + 98563360 98563400 41 ACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTT ACGCGCCTGGCAGTGATCAGCATGGAGATGCGGAAGAACTT < 41bp 1 0.184097922105349 1 0.409989058971405 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98563380 chr7:98563377 nonsynonymous SNV 0.997 3 18 hm5C_associated_SNPs_29656 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29899 DeepMRMD:1;iRNA_m5C:0.999536712157815 29900 chr3 148562265 148562265 1 + G A LUSC 148562266 + 148562246 148562286 41 CTTCATAATTCACATACAGGCTGTTCGTACCTATGGACGTG CTTCATAATTCACATACAGACTGTTCGTACCTATGGACGTG < 41bp 1 0.156201844229747 1 0.0159445106983185 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562266 chr3:148562265 nonsynonymous SNV 0.791 4 20 hm5C_associated_SNPs_29658 0 0 0 0 1 exosome 1 0.500231955099069 1 0.999536089801862 hm5C_site_29900 DeepMRMD:1;iRNA_m5C:0.999536089801862 29901 chr3 148562265 148562265 1 + G A LUSC 148562271 + 148562251 148562291 41 TAATTCACATACAGGCTGTTCGTACCTATGGACGTGAGATC TAATTCACATACAGACTGTTCGTACCTATGGACGTGAGATC < 41bp 1 0.077090618725135 1 0.0484894812107086 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562271 chr3:148562265 nonsynonymous SNV 0.791 4 15 hm5C_associated_SNPs_29659 0 0 0 0 1 exosome 1 0.500220377151203 1 0.999559245697593 hm5C_site_29901 DeepMRMD:1;iRNA_m5C:0.999559245697593 29902 chr3 148562265 148562265 1 + G A LUSC 148562275 + 148562255 148562295 41 TCACATACAGGCTGTTCGTACCTATGGACGTGAGATCCAAG TCACATACAGACTGTTCGTACCTATGGACGTGAGATCCAAG < 41bp 1 0.0413391080677408 1 0.025677502155304 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562275 chr3:148562265 nonsynonymous SNV 0.791 4 11 hm5C_associated_SNPs_29660 0 0 0 0 1 exosome 1 0.500231644189825 1 0.99953671162035 hm5C_site_29902 DeepMRMD:1;iRNA_m5C:0.99953671162035 29903 chr3 148562265 148562265 1 + G A LUSC 148562276 + 148562256 148562296 41 CACATACAGGCTGTTCGTACCTATGGACGTGAGATCCAAGT CACATACAGACTGTTCGTACCTATGGACGTGAGATCCAAGT < 41bp 1 0.244709761383916 1 0.0757855772972107 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562276 chr3:148562265 nonsynonymous SNV 0.791 4 10 hm5C_associated_SNPs_29661 0 0 0 0 1 exosome 1 0.500231972772177 1 0.999536054455646 hm5C_site_29903 DeepMRMD:1;iRNA_m5C:0.999536054455646 29904 chr3 148562265 148562265 1 + G A LUSC 148562283 + 148562263 148562303 41 AGGCTGTTCGTACCTATGGACGTGAGATCCAAGTGACAGAG AGACTGTTCGTACCTATGGACGTGAGATCCAAGTGACAGAG < 41bp 1 0.684490378916094 1 0.207981109619141 experiment 0.631019242167812 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562283 chr3:148562265 nonsynonymous SNV 0.791 4 3 hm5C_associated_SNPs_29662 0 0 0 0 1 exosome 1 0.500231643936526 1 0.999536712126949 hm5C_site_29904 DeepMRMD:1;iRNA_m5C:0.999536712126949 29905 chr19 38610161 38610161 1 + C A LUSC 38610159 + 38610139 38610179 41 GCCGAAAACTGTGTCTCCAACACCCCCATCGACTCCACCGG GCCGAAAACTGTGTCTCCAACAACCCCATCGACTCCACCGG < 41bp 1 0.0901280348068868 1 0.21940153837204 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38610159 chr19:38610161 nonsynonymous SNV 0.989 2 23 hm5C_associated_SNPs_29663 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29905 DeepMRMD:1;iRNA_m5C:0.999536712157815 29906 chrX 41201857 41201857 1 + G A LUSC 41201839 + 41201819 41201859 41 TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAGAT TTGAACGTGGTGGAAACAGTCGCTGGTGTGACAAATCAAAT < 41bp 1 0.667157477256645 1 0.151583194732666 experiment 0.66568504548671 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201839 chrX:41201857 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_29664 0 0 1 0 1 Nucleus 1 0.50023178379593 1 0.99953643240814 hm5C_site_29906 DeepMRMD:1;iRNA_m5C:0.99953643240814 29907 chrX 41201857 41201857 1 + G A LUSC 41201850 + 41201830 41201870 41 GGAAACAGTCGCTGGTGTGACAAATCAGATGAAGATGATTG GGAAACAGTCGCTGGTGTGACAAATCAAATGAAGATGATTG < 41bp 1 0.271820933206589 1 0.629812896251678 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201850 chrX:41201857 nonsynonymous SNV 1.000 0 28 hm5C_associated_SNPs_29665 0 0 1 0 1 Nucleus 1 0.500231641878974 0.740374207496644 0.999536716242052 hm5C_site_29907 DeepMRMD:0.740374207496644;iRNA_m5C:0.999536716242052 29908 chrX 41201857 41201857 1 + G A LUSC 41201855 + 41201835 41201875 41 CAGTCGCTGGTGTGACAAATCAGATGAAGATGATTGGTCAA CAGTCGCTGGTGTGACAAATCAAATGAAGATGATTGGTCAA < 41bp 1 0.615534994738788 1 0.712692141532898 experiment 0.768930010522423 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41201855 chrX:41201857 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_29666 0 0 1 0 1 Nucleus 1 0.500231643791769 0.574615716934204 0.999536712416463 hm5C_site_29908 DeepMRMD:0.574615716934204;iRNA_m5C:0.999536712416463 29909 chr15 99672069 99672069 1 + C T LUSC 99672066 + 99672046 99672086 41 GCAGCGAGCCCGACCGGAGCCAGCCGGTCTGTGAGGCATGT GCAGCGAGCCCGACCGGAGCCAGTCGGTCTGTGAGGCATGT < 41bp 1 0.215526278350571 1 0.161443710327148 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99672066 chr15:99672069 synonymous SNV . 0 24 hm5C_associated_SNPs_29667 0 0 0 0 0 exosome 1 0.500232268233391 1 0.999535463533219 hm5C_site_29909 DeepMRMD:1;iRNA_m5C:0.999535463533219 29910 chr10 135000047 135000047 1 + T C LUSC 135000066 + 135000046 135000086 41 TTCACACCCCAGCCAGGGGCCAGCAGAGGCCCCTGCAGACC TCCACACCCCAGCCAGGGGCCAGCAGAGGCCCCTGCAGACC < 41bp 1 0.57719401106486 1 0.743225514888763 experiment 0.845611977870279 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135000066 chr10:135000047 nonsynonymous SNV 0.001 0 2 hm5C_associated_SNPs_29668 0 0 0 0 0 Endoplasmic reticulum 1 0.500231638632574 0.513548970222474 0.999536722734851 hm5C_site_29910 DeepMRMD:0.513548970222474;iRNA_m5C:0.999536722734851 29911 chr12 57911120 57911120 1 + C T LUSC 57911135 + 57911115 57911155 41 CAGGTCCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTG CAGGTTCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTG < 41bp 1 0.133246800422113 1 0.0394071042537689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911135 chr12:57911120 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_29669 0 0 0 0 1 Cytosol 1 0.500231643921036 1 0.999536712157929 hm5C_site_29911 DeepMRMD:1;iRNA_m5C:0.999536712157929 29912 chr12 57911120 57911120 1 + C T LUSC 57911139 + 57911119 57911159 41 TCCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTGTCCC TTCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTGTCCC < 41bp 1 0.289280790861003 1 0.167968183755875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911139 chr12:57911120 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_29670 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29912 DeepMRMD:1;iRNA_m5C:0.999536712157815 29913 chr1 166819255 166819255 1 + C A LUSC 166819242 + 166819222 166819262 41 TCTTGAATGGCTTCCGGGGCCATGCCACAGATTCCGTGAAG TCTTGAATGGCTTCCGGGGCCATGCCACAGATTACGTGAAG < 41bp 1 0.202788318265455 1 0.194574326276779 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control POGK ENSG00000143157 CDS Human protein_coding chr1:166819242 chr1:166819255 nonsynonymous SNV 0.859 4 34 hm5C_associated_SNPs_29671 0 0 1 0 0 Nucleus 1 0.500231646264858 1 0.999536707470283 hm5C_site_29913 DeepMRMD:1;iRNA_m5C:0.999536707470283 29914 chr1 155032736 155032736 1 + G T LUSC 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTTGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG < 41bp 1 0.558185173328736 1 0.59773725271225 experiment 0.883629653342529 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032736 synonymous SNV . 0 6 hm5C_associated_SNPs_29672 0 0 1 0 2 Ribosome 1 0.500233967824654 0.8045254945755 0.999532064350693 hm5C_site_29914 DeepMRMD:0.8045254945755;iRNA_m5C:0.999532064350693 29915 chr2 160053216 160053216 1 + C T LUSC 160053224 + 160053204 160053244 41 CTTGTGAGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTG CTTGTGAGTGGTTGCCGGGTCCTCCCCAGCCAGGCACCCTG < 41bp 1 0.0797046791415998 1 0.05685755610466 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160053224 chr2:160053216 nonsynonymous SNV 0.609 0 13 hm5C_associated_SNPs_29673 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29915 DeepMRMD:1;iRNA_m5C:0.999536712157815 29916 chr2 160053216 160053216 1 + C T LUSC 160053230 + 160053210 160053250 41 AGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTGAGGAAG AGTGGTTGCCGGGTCCTCCCCAGCCAGGCACCCTGAGGAAG < 41bp 1 0.524256791962174 1 0.569540917873383 experiment 0.951486416075653 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160053230 chr2:160053216 nonsynonymous SNV 0.609 0 7 hm5C_associated_SNPs_29674 0 0 1 0 2 Nucleus 1 0.500231643944258 0.860918164253234 0.999536712111484 hm5C_site_29916 DeepMRMD:0.860918164253234;iRNA_m5C:0.999536712111484 29917 chr10 135233534 135233534 1 + C T LUSC 135233540 + 135233520 135233560 41 CGTCCCCCAGGTAACGTGAACATTATTCAGCCTAACTATCC CGTCCCCCAGGTAATGTGAACATTATTCAGCCTAACTATCC < 41bp 1 0.18298457933681 1 0.0123807787895203 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135233540 chr10:135233534 synonymous SNV . 0 15 hm5C_associated_SNPs_29675 0 0 1 0 1 Cytosol 1 0.500231643921032 1 0.999536712157937 hm5C_site_29917 DeepMRMD:1;iRNA_m5C:0.999536712157937 29918 chr1 42925448 42925448 1 + C T LUSC 42925451 + 42925431 42925471 41 CTAATATCCTTGAGTCACGACAGTCCTTTGTGTTTATTGTA CTAATATCCTTGAGTCATGACAGTCCTTTGTGTTTATTGTA < 41bp 1 0.0975327647032596 1 0.055000364780426 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPCS ENSG00000127125 CDS Human protein_coding chr1:42925451 chr1:42925448 stopgain 0.857 0 18 hm5C_associated_SNPs_29676 0 0 1 0 0 Ribosome 1 0.500231643921596 1 0.999536712156808 hm5C_site_29918 DeepMRMD:1;iRNA_m5C:0.999536712156808 29919 chr16 19580887 19580887 1 + G T LUSC 19580890 + 19580870 19580910 41 TGTTTGCAGCCACTGCTGACCCCGCAGCCTTGGCAGCTGCC TGTTTGCAGCCACTGCTTACCCCGCAGCCTTGGCAGCTGCC < 41bp 1 0.362313293390154 1 0.405920833349228 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19580890 chr16:19580887 nonsynonymous SNV 0.325 2 18 hm5C_associated_SNPs_29677 0 0 0 0 1 Cytosol 1 0.500231628548634 1 0.999536742902731 hm5C_site_29919 DeepMRMD:1;iRNA_m5C:0.999536742902731 29920 chr15 43816618 43816618 1 + C T LUSC 43816600 + 43816580 43816620 41 TACATCCAGGAGAACCAGCCCTTGGAGAAGCAGAGGAGCGG TACATCCAGGAGAACCAGCCCTTGGAGAAGCAGAGGAGTGG < 41bp 1 0.164541134102475 1 0.558487117290497 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP1A ENSG00000166963 CDS Human protein_coding chr15:43816600 chr15:43816618 nonsynonymous SNV 0.898 3 39 hm5C_associated_SNPs_29679 0 0 0 0 0 nucleolus 1 0.500231643921092 0.883025765419006 0.999536712157815 hm5C_site_29920 DeepMRMD:0.883025765419006;iRNA_m5C:0.999536712157815 29921 chr6 7880293 7880293 1 + G A LUSC 7880280 + 7880260 7880300 41 TACTGTGATGGAGAATGCTCCTTCCCACTCAACGCACACAT TACTGTGATGGAGAATGCTCCTTCCCACTCAACACACACAT < 41bp 1 0.0925657525142281 1 0.12411904335022 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BMP6 ENSG00000153162 CDS Human protein_coding chr6:7880280 chr6:7880293 nonsynonymous SNV 0.972 4 34 hm5C_associated_SNPs_29680 0 0 0 0 2 Ribosome 1 0.500231965727552 1 0.999536068544896 hm5C_site_29921 DeepMRMD:1;iRNA_m5C:0.999536068544896 29922 chr16 1793379 1793379 1 + G A LUSC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCCCCTGGCTGACAGCACGGTACG < 41bp 1 0.183994634895468 1 0.0716525912284851 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793379 nonsynonymous SNV 0.542 1 31 hm5C_associated_SNPs_29681 0 0 1 0 3 chromatin 1 0.500231643919996 1 0.999536712160009 hm5C_site_29922 DeepMRMD:1;iRNA_m5C:0.999536712160009 29923 chr19 17450292 17450292 1 + C T LUSC 17450306 + 17450286 17450326 41 CCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTC CCGTGATGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTC < 41bp 1 0.310445997439642 1 0.864112257957458 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450306 chr19:17450292 synonymous SNV . 0 7 hm5C_associated_SNPs_29682 0 0 1 0 1 Ribosome 1 0.500214309657158 0.271775484085084 0.999571380685684 hm5C_site_29923 DeepMRMD:0.271775484085084;iRNA_m5C:0.999571380685684 29924 chr9 134064487 134064487 1 + C T LUSC 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCTG < 41bp 1 0.551165783505556 1 0.614125370979309 experiment 0.897668432988887 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064487 synonymous SNV . 0 40 hm5C_associated_SNPs_29683 0 0 1 0 2 Cytosol 1 0.500231643921092 0.771749258041382 0.999536712157815 hm5C_site_29924 DeepMRMD:0.771749258041382;iRNA_m5C:0.999536712157815 29925 chr7 87005004 87005004 1 + C T LUSC 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT TAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT < 41bp 1 0.162785141178221 1 0.329127281904221 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005004 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_29684 0 0 1 0 2 Nucleus 1 0.5002316438765 1 0.999536712247 hm5C_site_29925 DeepMRMD:1;iRNA_m5C:0.999536712247 29926 chr16 1818251 1818251 1 + T A LUSC 1818253 + 1818233 1818273 41 CCCGTCCCGGGGGCATCATCCACGTGTATGGCGATGACAGC CCCGTCCCGGGGGCATCAACCACGTGTATGGCGATGACAGC < 41bp 1 0.548668523770293 1 0.65506511926651 experiment 0.902662952459415 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1818253 chr16:1818251 nonsynonymous SNV 0.920 4 19 hm5C_associated_SNPs_29685 0 0 1 0 1 chromatin 1 0.500233282854144 0.68986976146698 0.999533434291711 hm5C_site_29926 DeepMRMD:0.68986976146698;iRNA_m5C:0.999533434291711 29927 chr2 167056266 167056266 1 + T C LUSC 167056285 - 167056265 167056305 41 CCAGGATTGGCCGAATCCTACGTCTAGTCAAAGGAGCAAAG CCAGGATTGGCCGAATCCTACGTCTAGTCAAAGGAGCAAGG < 41bp 1 0.161660222284603 1 0.0398800373077393 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167056285 chr2:167056266 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_29686 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_29927 DeepMRMD:1;iRNA_m5C:0.999536712157815 29928 chr22 39826118 39826118 1 + C T LUSC 39826113 + 39826093 39826133 41 CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA CTCTTCCGCTCCCGGCCCGCCCACTTGCTCCCGCCTGGCGA < 41bp 1 0.125885176439328 1 0.158393740653992 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39826113 chr22:39826118 nonsynonymous SNV 0.337 1 26 hm5C_associated_SNPs_29688 0 0 1 0 1 Cytosol 1 0.500231643873017 1 0.999536712253966 hm5C_site_29928 DeepMRMD:1;iRNA_m5C:0.999536712253966 29929 chr10 126505156 126505156 1 + C T LUSC 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACTATCAGCCTTGTTCAAAACTTTTT < 41bp 1 0.372667454291453 1 0.108684033155441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505156 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_29689 0 0 0 0 2 Nucleus 1 0.500236590412771 1 0.999526819174458 hm5C_site_29929 DeepMRMD:1;iRNA_m5C:0.999526819174458 29930 chr10 5963500 5963500 1 + G T LUSC 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CGGGTGACGGAATGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.0834349981506513 1 0.19140562415123 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963500 nonsynonymous SNV 0.812 4 13 hm5C_associated_SNPs_29690 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29930 DeepMRMD:1;iRNA_m5C:0.999536712157815 29931 chr10 5963500 5963500 1 + G T LUSC 5963513 + 5963493 5963533 41 GACGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG GACGGAATGGGAATTCCCTTCAAGGATACATTTGATTGGGG < 41bp 1 0.639802474489061 1 0.753195881843567 experiment 0.720395051021877 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963513 chr10:5963500 nonsynonymous SNV 0.812 4 8 hm5C_associated_SNPs_29691 0 0 1 0 2 Ribosome 1 0.500231643352485 0.493608236312866 0.999536713295029 hm5C_site_29931 DeepMRMD:0.493608236312866;iRNA_m5C:0.999536713295029 29932 chr17 53852192 53852192 1 + C T LUSC 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCGGGTGGCCAAATTCTGTCCTGGCTCATT < 41bp 1 0.295172663968811 1 0.168204635381699 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852192 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_29692 0 0 1 1 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29932 DeepMRMD:1;iRNA_m5C:0.999536712157815 29933 chr16 30740303 30740303 1 + A C LUSC 30740289 + 30740269 30740309 41 TTTTTCTCTCACCCCCAGGACTCCCTGGAGGAAAAGCGGAA TTTTTCTCTCACCCCCAGGACTCCCTGGAGGAAACGCGGAA < 41bp 1 0.0750715682875336 1 0.232941389083862 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30740289 chr16:30740303 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_29693 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29933 DeepMRMD:1;iRNA_m5C:0.999536712157815 29934 chr14 35649910 35649910 1 + G A LUSC 35649907 + 35649887 35649927 41 ATTTGAGAACTTCATAAAATCTCGTCCTCCTTTTGATGTTG ATTTGAGAACTTCATAAAATCTCATCCTCCTTTTGATGTTG < 41bp 1 0.298008279678377 1 0.099660336971283 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA0391 ENSG00000100890;ENSG00000258790 CDS Human other chr14:35649907 chr14:35649910 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_29694 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644087989 1 0.999536711824022 hm5C_site_29934 DeepMRMD:1;iRNA_m5C:0.999536711824022 29935 chr3 30713554 30713554 1 + C T LUSC 30713566 + 30713546 30713586 41 AAGGACATCTTCTCAGACATCAATCTGAAGCATGAGAACAT AAGGACATTTTCTCAGACATCAATCTGAAGCATGAGAACAT < 41bp 1 0.122287162590567 1 0.046229213476181 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30713566 chr3:30713554 synonymous SNV . 0 9 hm5C_associated_SNPs_29695 0 0 1 0 0 Cytosol 1 0.50023034279788 1 0.999539314404239 hm5C_site_29935 DeepMRMD:1;iRNA_m5C:0.999539314404239 29936 chr2 219609925 219609925 1 + T A LUSC 219609940 + 219609920 219609960 41 CCCCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAA CCCCCAACCATCTATTTTGGCACTCGGGATGAGAGAGGTAA < 41bp 1 0.126620423482276 1 0.0488289594650269 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219609940 chr2:219609925 synonymous SNV . 0 6 hm5C_associated_SNPs_29696 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29936 DeepMRMD:1;iRNA_m5C:0.999536712157815 29937 chr2 219609925 219609925 1 + T A LUSC 219609942 + 219609922 219609962 41 CCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAAAC CCCAACCATCTATTTTGGCACTCGGGATGAGAGAGGTAAAC < 41bp 1 0.551919882338622 1 0.144984751939774 experiment 0.896160235322756 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219609942 chr2:219609925 synonymous SNV . 0 4 hm5C_associated_SNPs_29697 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29937 DeepMRMD:1;iRNA_m5C:0.999536712157815 29938 chr18 13095637 13095637 1 + G A LUSC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.171859936409406 1 0.0935557186603546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095637 stopgain 0.016 1 5 hm5C_associated_SNPs_29698 0 0 1 8 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29938 DeepMRMD:1;iRNA_m5C:0.999536712157815 29939 chr18 13095637 13095637 1 + G A LUSC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGAACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.562976169643423 1 0.1068414747715 experiment 0.874047660713154 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095637 stopgain 0.016 1 3 hm5C_associated_SNPs_29699 0 0 1 8 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29939 DeepMRMD:1;iRNA_m5C:0.999536712157815 29940 chr3 120315361 120315361 1 + A G LUSC 120315381 + 120315361 120315401 41 ACGATCCCAACCGCCGAGGGCTCATCGTGAGTGTGGGGCCT GCGATCCCAACCGCCGAGGGCTCATCGTGAGTGTGGGGCCT < 41bp 1 0.505039203893455 1 0.0751952826976776 experiment 0.989921592213089 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFB4 ENSG00000065518 CDS Human protein_coding chr3:120315381 chr3:120315361 nonsynonymous SNV 0.996 1 1 hm5C_associated_SNPs_29700 0 0 1 0 1 Ribosome 1 0.500231121395987 1 0.999537757208026 hm5C_site_29940 DeepMRMD:1;iRNA_m5C:0.999537757208026 29941 chr11 86518796 86518796 1 + C T LUSC 86518805 + 86518785 86518825 41 GCATACCGCCTCCCTGTCGTCTTGCCCCAGTCTACCCTCAA GCATACCGCCTTCCTGTCGTCTTGCCCCAGTCTACCCTCAA < 41bp 1 0.229284949068804 1 0.180788367986679 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRSS23 ENSG00000150687 CDS Human protein_coding chr11:86518805 chr11:86518796 synonymous SNV . 0 12 hm5C_associated_SNPs_29702 0 0 1 0 0 Ribosome 1 0.500231643921436 1 0.999536712157127 hm5C_site_29941 DeepMRMD:1;iRNA_m5C:0.999536712157127 29942 chr16 2818222 2818222 1 + G T LUSC 2818203 + 2818183 2818223 41 TCCTCCTCCTCCTCTGGCTCCAGTTCTAGTGACTCAGAGGG TCCTCCTCCTCCTCTGGCTCCAGTTCTAGTGACTCAGAGTG < 41bp 1 0.0991499290462377 1 0.189061969518661 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2818203 chr16:2818222 nonsynonymous SNV 0.996 2 40 hm5C_associated_SNPs_29703 0 0 1 0 0 Nucleus 1 0.500231643919978 1 0.999536712160045 hm5C_site_29942 DeepMRMD:1;iRNA_m5C:0.999536712160045 29943 chrX 37984555 37984555 1 + C T LUSC 37984551 + 37984531 37984571 41 GATTGTTTTTTCTCATGCAGCTACCTGCTCCCTGATGATAG GATTGTTTTTTCTCATGCAGCTACTTGCTCCCTGATGATAG < 41bp 1 0.147409576735862 1 0.0458766222000122 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37984551 chrX:37984555 synonymous SNV . 0 25 hm5C_associated_SNPs_29704 0 0 0 0 1 cytosol 1 0.500231643948619 1 0.999536712102762 hm5C_site_29943 DeepMRMD:1;iRNA_m5C:0.999536712102762 29944 chr20 42695413 42695413 1 + G T LUSC 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTTCTCACCTGGCCCATCCAA < 41bp 1 0.159753493904613 1 0.0418576300144196 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695413 nonsynonymous SNV 0.876 1 23 hm5C_associated_SNPs_29705 0 0 1 0 2 exosome 1 0.50023164392104 1 0.99953671215792 hm5C_site_29944 DeepMRMD:1;iRNA_m5C:0.99953671215792 29945 chr3 49212197 49212197 1 + G T LUSC 49212179 + 49212159 49212199 41 CCAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGT CCAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCTGT < 41bp 1 0.0785873779730447 1 0.110293090343475 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212179 chr3:49212197 synonymous SNV . 0 39 hm5C_associated_SNPs_29706 0 0 1 0 1 Cytosol 1 0.500231643921364 1 0.999536712157272 hm5C_site_29945 DeepMRMD:1;iRNA_m5C:0.999536712157272 29946 chr3 49212197 49212197 1 + G T LUSC 49212180 + 49212160 49212200 41 CAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGTG CAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCTGTG < 41bp 1 0.637904332703646 1 0.175075113773346 experiment 0.724191334592707 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212180 chr3:49212197 synonymous SNV . 0 38 hm5C_associated_SNPs_29707 0 0 1 0 1 Cytosol 1 0.500231643917397 1 0.999536712165206 hm5C_site_29946 DeepMRMD:1;iRNA_m5C:0.999536712165206 29947 chr3 133099360 133099360 1 + A T LUSC 133099366 + 133099346 133099386 41 GGGCACCCACCACCACCTCCCTGGGGCCTGCAAAGGACAAG GGGCACCCACCACCTCCTCCCTGGGGCCTGCAAAGGACAAG < 41bp 1 0.639245848702997 1 0.21513444185257 experiment 0.721508302594005 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM108 ENSG00000144868 CDS Human protein_coding chr3:133099366 chr3:133099360 nonsynonymous SNV 0.003 0 15 hm5C_associated_SNPs_29708 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643920996 1 0.999536712158008 hm5C_site_29947 DeepMRMD:1;iRNA_m5C:0.999536712158008 29948 chr1 23236984 23236984 1 + C T LUSC 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACCGCAACCACCGGCTCAAGTTC < 41bp 1 0.507831843277721 1 0.371016651391983 experiment 0.984336313444559 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236984 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_29709 0 0 0 0 1 Endoplasmic reticulum 1 0.500231637416025 1 0.99953672516795 hm5C_site_29948 DeepMRMD:1;iRNA_m5C:0.99953672516795 29949 chr5 140573662 140573662 1 + C G LUSC 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATCAACGCGGACAACGGCCACGTGTTCGCCCTCAGGTC < 41bp 1 0.465895552262741 1 0.111057966947556 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573662 nonsynonymous SNV 0.109 3 25 hm5C_associated_SNPs_29710 0 0 0 0 0 exosome 1 0.500231643921202 1 0.999536712157596 hm5C_site_29949 DeepMRMD:1;iRNA_m5C:0.999536712157596 29950 chr19 10897259 10897259 1 + G T LUSC 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG TGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG < 41bp 1 0.17900961809398 1 0.193195015192032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897259 nonsynonymous SNV 0.992 3 1 hm5C_associated_SNPs_29711 0 0 1 0 1 Nucleus 1 0.500231644352063 1 0.999536711295874 hm5C_site_29950 DeepMRMD:1;iRNA_m5C:0.999536711295874 29951 chr18 8114809 8114809 1 + C G LUSC 8114803 + 8114783 8114823 41 ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAA ACACAGGAAACCAAAATAGACTGTGTGCAAGTGGCCACAAA < 41bp 1 0.178847305081011 1 0.0419135093688965 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:8114803 chr18:8114809 synonymous SNV . 0 27 hm5C_associated_SNPs_29712 0 0 1 0 2 Nucleus 1 0.500231052540305 1 0.999537894919391 hm5C_site_29951 DeepMRMD:1;iRNA_m5C:0.999537894919391 29952 chr14 35550321 35550321 1 + G C LUSC 35550328 + 35550308 35550348 41 CATTGTTCAGACAGATCAACCAGAGACAGTGATATCCAGCT CATTGTTCAGACACATCAACCAGAGACAGTGATATCCAGCT < 41bp 1 0.504587630258096 1 0.630190074443817 experiment 0.990824739483807 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM177A1 ENSG00000151327 CDS Human protein_coding chr14:35550328 chr14:35550321 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_29713 0 0 1 0 1 Endoplasmic reticulum 1 0.500232134911116 0.739619851112366 0.999535730177768 hm5C_site_29952 DeepMRMD:0.739619851112366;iRNA_m5C:0.999535730177768 29953 chr1 109241358 109241358 1 + C G LUSC 109241377 + 109241357 109241397 41 TCAACAGATTAAAACCCGACCTAGAAAAATCAAGAAAGATG TGAACAGATTAAAACCCGACCTAGAAAAATCAAGAAAGATG < 41bp 1 0.571525919907641 1 0.23075732588768 experiment 0.856948160184718 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109241377 chr1:109241358 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_29715 0 0 1 0 1 Nucleus 1 0.500231643885921 1 0.999536712228157 hm5C_site_29953 DeepMRMD:1;iRNA_m5C:0.999536712228157 29954 chr7 129064931 129064931 1 + G T LUSC 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATTCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC < 41bp 1 0.556139825558666 1 0.663635611534119 experiment 0.887720348882667 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064931 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_29716 0 0 0 0 2 chromatin 1 0.500231643920955 0.672728776931762 0.99953671215809 hm5C_site_29954 DeepMRMD:0.672728776931762;iRNA_m5C:0.99953671215809 29955 chr17 62223476 62223476 1 + G A LUSC 62223469 + 62223449 62223489 41 ATGACATTCCAATTAAAGCACGTGTTAGACTGCTGACGCGG ATGACATTCCAATTAAAGCACGTGTTAAACTGCTGACGCGG < 41bp 1 0.378123300395625 1 0.364908218383789 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223469 chr17:62223476 . . 0 28 hm5C_associated_SNPs_29718 0 0 1 1 0 unknown 1 0.500232103786699 1 0.999535792426602 hm5C_site_29955 DeepMRMD:1;iRNA_m5C:0.999535792426602 29956 chr17 62223476 62223476 1 + G A LUSC 62223481 + 62223461 62223501 41 TTAAAGCACGTGTTAGACTGCTGACGCGGGTGATGCGAACT TTAAAGCACGTGTTAAACTGCTGACGCGGGTGATGCGAACT < 41bp 1 0.345871198165773 1 0.170592427253723 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223481 chr17:62223476 . . 0 16 hm5C_associated_SNPs_29719 0 0 1 1 0 unknown 1 0.500231642422997 1 0.999536715154006 hm5C_site_29956 DeepMRMD:1;iRNA_m5C:0.999536715154006 29957 chr17 62223476 62223476 1 + G A LUSC 62223496 + 62223476 62223516 41 GACTGCTGACGCGGGTGATGCGAACTGGAGTCTGAGCCTGC AACTGCTGACGCGGGTGATGCGAACTGGAGTCTGAGCCTGC < 41bp 1 0.43697625190835 1 0.45729660987854 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223496 chr17:62223476 . . 0 1 hm5C_associated_SNPs_29720 0 0 1 1 0 unknown 1 0.500233125630767 1 0.999533748738467 hm5C_site_29957 DeepMRMD:1;iRNA_m5C:0.999533748738467 29958 chr15 74335390 74335390 1 + A G LUSC 74335388 + 74335368 74335408 41 TGACCTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGG TGACCTCCAGCTGGAAGGCCCCGGCACCCTCAGGGTCCTGG < 41bp 1 0.239987790627818 1 0.280622720718384 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74335388 chr15:74335390 nonsynonymous SNV 0.100 1 23 hm5C_associated_SNPs_29721 0 0 0 1 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29958 DeepMRMD:1;iRNA_m5C:0.999536712157815 29959 chr22 26400691 26400691 1 + G A LUSC 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGGATAACATCTCCATCCTCAGCTCCCAGCCAG < 41bp 1 0.0379296677474716 1 0.383710235357285 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400691 nonsynonymous SNV 0.838 1 17 hm5C_associated_SNPs_29722 0 0 0 0 1 chromatin 1 0.50023164392134 1 0.999536712157321 hm5C_site_29959 DeepMRMD:1;iRNA_m5C:0.999536712157321 29960 chr7 98591333 98591333 1 + C A LUSC 98591325 + 98591305 98591345 41 CCCTGGAAGGCATCGTCGATCAGATGGTCTGGTTCAGAGAA CCCTGGAAGGCATCGTCGATCAGATGGTATGGTTCAGAGAA < 41bp 1 0.290572022275492 1 0.489031940698624 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98591325 chr7:98591333 synonymous SNV . 0 29 hm5C_associated_SNPs_29723 0 0 1 0 1 Nucleus 1 0.500231643920995 1 0.99953671215801 hm5C_site_29960 DeepMRMD:1;iRNA_m5C:0.99953671215801 29961 chr2 54886312 54886312 1 + A G LUSC 54886300 + 54886280 54886320 41 TTTTCTCTTAGTTGGAGTTACTGGAAGTGCGCAGACAGCAA TTTTCTCTTAGTTGGAGTTACTGGAAGTGCGCGGACAGCAA < 41bp 1 0.647569565716093 1 0.736757874488831 experiment 0.704860868567814 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886300 chr2:54886312 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_29725 0 0 1 0 2 Nucleus 1 0.500235483265782 0.526484251022338 0.999529033468436 hm5C_site_29961 DeepMRMD:0.526484251022338;iRNA_m5C:0.999529033468436 29962 chr2 54886312 54886312 1 + A G LUSC 54886311 + 54886291 54886331 41 TTGGAGTTACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGA TTGGAGTTACTGGAAGTGCGCGGACAGCAAGAGGAAGAGGA < 41bp 1 0.134844644424465 1 0.46202027797699 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886311 chr2:54886312 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_29726 0 0 1 0 2 Nucleus 1 0.500231644079378 1 0.999536711841245 hm5C_site_29962 DeepMRMD:1;iRNA_m5C:0.999536711841245 29963 chr2 54886312 54886312 1 + A G LUSC 54886315 + 54886295 54886335 41 AGTTACTGGAAGTGCGCAGACAGCAAGAGGAAGAGGAGAGG AGTTACTGGAAGTGCGCGGACAGCAAGAGGAAGAGGAGAGG < 41bp 1 0.514973139526333 1 0.637288808822632 experiment 0.970053720947333 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886315 chr2:54886312 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_29727 0 0 1 0 2 Nucleus 1 0.500231643921096 0.725422382354736 0.999536712157808 hm5C_site_29963 DeepMRMD:0.725422382354736;iRNA_m5C:0.999536712157808 29964 chrX 41089004 41089004 1 + C A LUSC 41089020 + 41089000 41089040 41 CTTGCAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA CTTGAAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA < 41bp 1 0.108350639600774 1 0.184901058673859 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089020 chrX:41089004 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_29729 0 0 1 0 2 Nucleus 1 0.500231644744035 1 0.99953671051193 hm5C_site_29964 DeepMRMD:1;iRNA_m5C:0.99953671051193 29965 chr19 14561789 14561789 1 + G T LUSC 14561797 + 14561777 14561817 41 GGGGAGCTGCCCGCCGACCACCCCAAGGGGCGGCTGCTGCG GGGGAGCTGCCCTCCGACCACCCCAAGGGGCGGCTGCTGCG < 41bp 1 0.606673622619706 1 0.5861856341362 experiment 0.786652754760589 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561797 chr19:14561789 nonsynonymous SNV 0.995 0 13 hm5C_associated_SNPs_29730 0 0 1 0 1 Ribosome 1 0.500231643921091 0.8276287317276 0.999536712157819 hm5C_site_29965 DeepMRMD:0.8276287317276;iRNA_m5C:0.999536712157819 29966 chr2 203421083 203421083 1 + C G LUSC 203421065 + 203421045 203421085 41 GTCTTGTGGACAGGAGGGAACGGCCACTAGAAGGTGGCCGA GTCTTGTGGACAGGAGGGAACGGCCACTAGAAGGTGGCGGA < 41bp 1 0.277756359085398 1 0.48128741979599 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BMPR2 ENSG00000204217 CDS Human protein_coding chr2:203421065 chr2:203421083 nonsynonymous SNV 0.998 3 39 hm5C_associated_SNPs_29731 0 0 1 0 0 Ribosome 1 0.500231643919224 1 0.999536712161553 hm5C_site_29966 DeepMRMD:1;iRNA_m5C:0.999536712161553 29967 chr2 239038780 239038780 1 + G A LUSC 239038799 + 239038779 239038819 41 GGAGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA GAAGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA < 41bp 1 0.527458025354713 1 0.917332887649536 experiment 0.945083949290573 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ESPNL ENSG00000144488 CDS Human protein_coding chr2:239038799 chr2:239038780 synonymous SNV . 0 2 hm5C_associated_SNPs_29732 0 0 0 0 1 exosome 1 0.500231643921092 0.165334224700928 0.999536712157815 hm5C_site_29967 DeepMRMD:0.165334224700928;iRNA_m5C:0.999536712157815 29968 chr3 111705821 111705821 1 + G C LUSC 111705815 + 111705795 111705835 41 TGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCT TGCTTCATGCTGCAATTGCACGACCACAGAAGGTCGTGGCT < 41bp 1 0.465116699743595 1 0.0816821157932281 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705815 chr3:111705821 nonsynonymous SNV 0.204 0 27 hm5C_associated_SNPs_29733 0 0 0 0 2 Ribosome 1 0.50023164717102 1 0.99953670565796 hm5C_site_29968 DeepMRMD:1;iRNA_m5C:0.99953670565796 29969 chr1 203816447 203816447 1 + C T LUSC 203816460 + 203816440 203816480 41 TCTACTTCAGGAGCAAGAAGCTCCTCCACTATCCGTATCAA TCTACTTTAGGAGCAAGAAGCTCCTCCACTATCCGTATCAA < 41bp 1 0.355429927241108 1 0.245687484741211 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203816460 chr1:203816447 nonsynonymous SNV 0.335 0 8 hm5C_associated_SNPs_29734 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_29969 DeepMRMD:1;iRNA_m5C:0.999536712157815 29970 chr19 13054428 13054428 1 + G A LUSC 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACGAGACATGGGGCGTAAC < 41bp 1 0.636038658160697 1 0.457737475633621 experiment 0.727922683678606 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054428 synonymous SNV . 0 30 hm5C_associated_SNPs_29735 0 0 1 0 2 Ribosome 1 0.500231506954911 1 0.999536986090179 hm5C_site_29970 DeepMRMD:1;iRNA_m5C:0.999536986090179 29971 chr19 13054428 13054428 1 + G A LUSC 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGCAACGAGACATGGGGCGTAACAAAGGTGA < 41bp 1 0.661843994332093 1 0.376543790102005 experiment 0.676312011335814 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054428 synonymous SNV . 0 22 hm5C_associated_SNPs_29736 0 0 1 0 2 Ribosome 1 0.500231643921384 1 0.999536712157233 hm5C_site_29971 DeepMRMD:1;iRNA_m5C:0.999536712157233 29972 chr16 2812505 2812505 1 + G T LUSC 2812509 + 2812489 2812529 41 AGACGTGGCCGCTCACGCTCCAGAACCCCAGCCAGACGTGG AGACGTGGCCGCTCACTCTCCAGAACCCCAGCCAGACGTGG < 41bp 1 0.669260877164916 1 0.91075736284256 experiment 0.661478245670168 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2812509 chr16:2812505 nonsynonymous SNV 0.209 0 17 hm5C_associated_SNPs_29737 0 0 1 0 0 Nucleus 1 0.500231643798785 0.17848527431488 0.999536712402431 hm5C_site_29972 DeepMRMD:0.17848527431488;iRNA_m5C:0.999536712402431 29973 chr2 135180449 135180449 1 + G C LUSC 135180429 + 135180409 135180449 41 CGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGG CGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGC < 41bp 1 0.0761205737098571 1 0.0155433118343353 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135180429 chr2:135180449 nonsynonymous SNV 0.885 0 41 hm5C_associated_SNPs_29738 0 0 1 0 2 Ribosome 1 0.500231643880306 1 0.999536712239388 hm5C_site_29973 DeepMRMD:1;iRNA_m5C:0.999536712239388 29974 chr13 111290867 111290867 1 + G C LUSC 111290847 + 111290827 111290867 41 CATGATCGCCGAGGTGGGGGCCGCCTTCAGCAAGCTCTTTG CATGATCGCCGAGGTGGGGGCCGCCTTCAGCAAGCTCTTTC < 41bp 1 0.302304414980232 1 0.210554480552673 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111290847 chr13:111290867 stoploss 0.001 3 41 hm5C_associated_SNPs_29739 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_29974 DeepMRMD:1;iRNA_m5C:0.999536712157815 29975 chr13 111290867 111290867 1 + G C LUSC 111290877 + 111290857 111290897 41 CAAGCTCTTTGAAACCTGAGCCCGCGCAGACCAGAAGTAAA CAAGCTCTTTCAAACCTGAGCCCGCGCAGACCAGAAGTAAA < 41bp 1 0.135255732400099 1 0.086175411939621 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111290877 chr13:111290867 stoploss 0.001 3 11 hm5C_associated_SNPs_29740 0 0 1 0 0 Cytosol 1 0.500231828686593 1 0.999536342626814 hm5C_site_29975 DeepMRMD:1;iRNA_m5C:0.999536342626814 29976 chr13 111290867 111290867 1 + G C LUSC 111290878 + 111290858 111290898 41 AAGCTCTTTGAAACCTGAGCCCGCGCAGACCAGAAGTAAAC AAGCTCTTTCAAACCTGAGCCCGCGCAGACCAGAAGTAAAC < 41bp 1 0.255824873705071 1 0.276206970214844 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111290878 chr13:111290867 stoploss 0.001 3 10 hm5C_associated_SNPs_29741 0 0 1 0 0 Cytosol 1 0.500231616103226 1 0.999536767793548 hm5C_site_29976 DeepMRMD:1;iRNA_m5C:0.999536767793548 29977 chr13 111290867 111290867 1 + G C LUSC 111290879 + 111290859 111290899 41 AGCTCTTTGAAACCTGAGCCCGCGCAGACCAGAAGTAAACA AGCTCTTTCAAACCTGAGCCCGCGCAGACCAGAAGTAAACA < 41bp 1 0.406336656119015 1 0.418569803237915 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111290879 chr13:111290867 stoploss 0.001 3 9 hm5C_associated_SNPs_29742 0 0 1 0 0 Cytosol 1 0.500231848700706 1 0.999536302598589 hm5C_site_29977 DeepMRMD:1;iRNA_m5C:0.999536302598589 29978 chr13 111290867 111290867 1 + G C LUSC 111290881 + 111290861 111290901 41 CTCTTTGAAACCTGAGCCCGCGCAGACCAGAAGTAAACAGG CTCTTTCAAACCTGAGCCCGCGCAGACCAGAAGTAAACAGG < 41bp 1 0.487361134794779 1 0.242245018482208 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111290881 chr13:111290867 stoploss 0.001 3 7 hm5C_associated_SNPs_29743 0 0 1 0 0 Cytosol 1 0.500231646610891 1 0.999536706778219 hm5C_site_29978 DeepMRMD:1;iRNA_m5C:0.999536706778219 29979 chr3 111698038 111698038 1 + C G LUSC 111698046 + 111698026 111698066 41 CAGCGGGCGCCACGGTGGCTCCCAGGTCAGTGTCCGAAAGG CAGCGGGCGCCAGGGTGGCTCCCAGGTCAGTGTCCGAAAGG < 41bp 1 0.68436645797759 1 0.251669675111771 experiment 0.631267084044821 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111698046 chr3:111698038 nonsynonymous SNV 0.670 0 13 hm5C_associated_SNPs_29744 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_29979 DeepMRMD:1;iRNA_m5C:0.999536712157814 29980 chr5 138994186 138994186 1 + C T LUSC 138994200 + 138994180 138994220 41 GGCAAGCTACAATAATGGGGCCAGTAAGTATTCAGATTAAT GGCAAGTTACAATAATGGGGCCAGTAAGTATTCAGATTAAT < 41bp 1 0.0512228483636824 1 0.0396513342857361 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2D2 ENSG00000131508 CDS Human protein_coding chr5:138994200 chr5:138994186 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_29745 0 0 1 0 1 Ribosome 1 0.500231643871415 1 0.99953671225717 hm5C_site_29980 DeepMRMD:1;iRNA_m5C:0.99953671225717 29981 chr12 21207473 21207473 1 + G T LUSC 21207493 + 21207473 21207513 41 GCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT TCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT < 41bp 1 0.0825022465954094 1 0.093438595533371 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207493 chr12:21207473 nonsynonymous SNV 0.001 0 1 hm5C_associated_SNPs_29746 0 0 0 0 2 nucleus 1 0.500231647102785 1 0.999536705794429 hm5C_site_29981 DeepMRMD:1;iRNA_m5C:0.999536705794429 29982 chr5 64082381 64082381 1 + C T LUSC 64082382 + 64082362 64082402 41 TCCTTTTGATGACATCATTCCAAGGGAAATTAAAAGGCTGA TCCTTTTGATGACATCATTTCAAGGGAAATTAAAAGGCTGA < 41bp 1 0.495355801146231 1 0.875751733779907 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64082382 chr5:64082381 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_29747 0 0 1 0 2 Nucleus 1 0.500231643688422 0.248496532440186 0.999536712623156 hm5C_site_29982 DeepMRMD:0.248496532440186;iRNA_m5C:0.999536712623156 29983 chr17 7476179 7476179 1 + C T LUSC 7476180 + 7476160 7476200 41 ATGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA ATGTCTGCGAGCCAGGATTTCCGGTAAGAAAGGCATTTGCA < 41bp 1 0.426964230449142 1 0.159740924835205 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476180 chr17:7476179 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_29748 0 0 1 0 1 Cytosol 1 0.500231612931171 1 0.999536774137658 hm5C_site_29983 DeepMRMD:1;iRNA_m5C:0.999536774137658 29984 chr17 7476179 7476179 1 + C T LUSC 7476181 + 7476161 7476201 41 TGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA TGTCTGCGAGCCAGGATTTCCGGTAAGAAAGGCATTTGCAA < 41bp 1 0.691471924485688 1 0.683213293552399 experiment 0.617056151028625 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476181 chr17:7476179 nonsynonymous SNV 0.997 1 19 hm5C_associated_SNPs_29749 0 0 1 0 1 Cytosol 1 0.50023164392099 0.633573412895202 0.999536712158021 hm5C_site_29984 DeepMRMD:0.633573412895202;iRNA_m5C:0.999536712158021 29985 chr19 39196707 39196707 1 + C T LUSC 39196704 + 39196684 39196724 41 AGACCTCGGCCAAGGAAGGGCTCCTTCTCTGGTGCCAGAGA AGACCTCGGCCAAGGAAGGGCTCTTTCTCTGGTGCCAGAGA < 41bp 1 0.0599294787630015 1 0.169633030891418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39196704 chr19:39196707 nonsynonymous SNV 0.960 5 24 hm5C_associated_SNPs_29750 0 0 1 0 2 Nucleus 1 0.500231580469096 1 0.999536839061808 hm5C_site_29985 DeepMRMD:1;iRNA_m5C:0.999536839061808 29986 chr5 140182609 140182609 1 + T A LUSC 140182596 + 140182576 140182616 41 TGCAGACTCAGGCTACAACGCGTGGCTTTCGTATGAGCTGC TGCAGACTCAGGCTACAACGCGTGGCTTTCGTAAGAGCTGC < 41bp 1 0.427158093636711 1 0.651640892028809 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PCDHA3 ENSG00000255408 CDS Human protein_coding chr5:140182596 chr5:140182609 stopgain 0.015 0 34 hm5C_associated_SNPs_29751 0 0 0 0 0 insoluble cytoplasm 1 0.500231640354457 0.696718215942382 0.999536719291085 hm5C_site_29986 DeepMRMD:0.696718215942382;iRNA_m5C:0.999536719291085 29987 chr7 43506110 43506110 1 + C T LUSC 43506109 + 43506089 43506129 41 AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTCATCA AATCACCTTGCTGCTGCAGTCTCCAGCGGTCAAGTTCATCA < 41bp 1 0.626378854554584 1 0.894201636314392 experiment 0.747242290890831 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HECW1 ENSG00000002746 CDS Human protein_coding chr7:43506109 chr7:43506110 synonymous SNV . 0 22 hm5C_associated_SNPs_29752 0 0 0 0 2 Cytosol 1 0.500231645264376 0.211596727371216 0.999536709471248 hm5C_site_29987 DeepMRMD:0.211596727371216;iRNA_m5C:0.999536709471248 29988 chr2 27446793 27446793 1 + T C LUSC 27446798 + 27446778 27446818 41 TCAATAGTGTCCAGTTTCACCCAGAGCACCAAGCTGGCCCT TCAATAGTGTCCAGTCTCACCCAGAGCACCAAGCTGGCCCT < 41bp 1 0.324668004667909 1 0.251024127006531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27446798 chr2:27446793 nonsynonymous SNV 0.999 5 16 hm5C_associated_SNPs_29753 0 0 1 0 0 Exosome 1 0.500220078201924 1 0.999559843596153 hm5C_site_29988 DeepMRMD:1;iRNA_m5C:0.999559843596153 29989 chr11 117280365 117280365 1 + G A LUSC 117280351 + 117280331 117280371 41 CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAGATCCAC CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAAATCCAC < 41bp 1 0.133757074229452 1 0.0329798460006714 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP164 ENSG00000110274 CDS Human protein_coding chr11:117280351 chr11:117280365 synonymous SNV . 0 35 hm5C_associated_SNPs_29754 0 0 0 0 1 Cytosol 1 0.50023164395601 1 0.99953671208798 hm5C_site_29989 DeepMRMD:1;iRNA_m5C:0.99953671208798 29990 chr11 4091353 4091353 1 + C T LUSC 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCTAAGGA < 41bp 1 0.628556842262116 1 0.74505478143692 experiment 0.742886315475768 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091353 synonymous SNV . 0 36 hm5C_associated_SNPs_29755 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643560694 0.50989043712616 0.999536712878611 hm5C_site_29990 DeepMRMD:0.50989043712616;iRNA_m5C:0.999536712878611 29991 chr5 43650627 43650627 1 + C T LUSC 43650617 + 43650597 43650637 41 GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCACAACT GGTTGGCACTGATGGGAGGACATTTGTATCTTTCCACAACT < 41bp 1 0.143698621196251 1 0.0447129905223846 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43650617 chr5:43650627 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_29756 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643957847 1 0.999536712084305 hm5C_site_29991 DeepMRMD:1;iRNA_m5C:0.999536712084305 29992 chr11 123989018 123989018 1 + G A LUSC 123989020 + 123989000 123989040 41 CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATGTGC CCAACCTGGGTCGAAGGCAGCAGTCACCCTGAAGTATGTGC < 41bp 1 0.200419593434349 1 0.319689095020294 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VWA5A ENSG00000110002 CDS Human protein_coding chr11:123989020 chr11:123989018 synonymous SNV . 0 19 hm5C_associated_SNPs_29757 0 0 0 0 0 nucleus 1 0.500231641881548 1 0.999536716236904 hm5C_site_29992 DeepMRMD:1;iRNA_m5C:0.999536716236904 29993 chr1 162745458 162745458 1 + G A LUSC 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTCTTAAGAAGATAAAGATCATGTCTCGGCTCAAGGACCC < 41bp 1 0.23444396332504 1 0.0683629512786865 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745458 nonsynonymous SNV 1.000 5 10 hm5C_associated_SNPs_29758 0 0 0 0 1 nucleolus 1 0.500231534789325 1 0.99953693042135 hm5C_site_29993 DeepMRMD:1;iRNA_m5C:0.99953693042135 29994 chr15 99672262 99672262 1 + G A LUSC 99672281 + 99672261 99672301 41 GGAGATTATTTTTCAGGGCCCCATTTCTGCTGCAGGGAAGG GAAGATTATTTTTCAGGGCCCCATTTCTGCTGCAGGGAAGG < 41bp 1 0.00724387088194078 1 0.0461640357971191 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99672281 chr15:99672262 nonsynonymous SNV 0.054 0 2 hm5C_associated_SNPs_29759 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_29994 DeepMRMD:1;iRNA_m5C:0.999536712157816 29995 chr15 99672262 99672262 1 + G A LUSC 99672282 + 99672262 99672302 41 GAGATTATTTTTCAGGGCCCCATTTCTGCTGCAGGGAAGGT AAGATTATTTTTCAGGGCCCCATTTCTGCTGCAGGGAAGGT < 41bp 1 0.00797096221396321 1 0.0990113317966461 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99672282 chr15:99672262 nonsynonymous SNV 0.054 0 1 hm5C_associated_SNPs_29760 0 0 0 0 0 exosome 1 0.500231643921334 1 0.999536712157331 hm5C_site_29995 DeepMRMD:1;iRNA_m5C:0.999536712157331 29996 chr12 56346688 56346688 1 + C T LUSC 56346679 + 56346659 56346699 41 TTAGGTGCTACAGCTAAAGTCATCACCGACCCTGATATCCT TTAGGTGCTACAGCTAAAGTCATCACCGATCCTGATATCCT < 41bp 1 0.375098097017747 1 0.0813276469707489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56346679 chr12:56346688 synonymous SNV . 0 30 hm5C_associated_SNPs_29761 0 0 0 0 0 Cytosol 1 0.500231643921107 1 0.999536712157787 hm5C_site_29996 DeepMRMD:1;iRNA_m5C:0.999536712157787 29997 chr12 111744784 111744784 1 + G A LUSC 111744768 + 111744748 111744788 41 CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACA CTCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAAGACA < 41bp 1 0.247801924510109 1 0.136761575937271 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744768 chr12:111744784 synonymous SNV . 0 37 hm5C_associated_SNPs_29762 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_29997 DeepMRMD:1;iRNA_m5C:0.999536712157814 29998 chr12 111744784 111744784 1 + G A LUSC 111744769 + 111744749 111744789 41 TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAG TCGGGCCCTCGGCTGGAGGCCGCGCTGGCCTCCAAAGACAG < 41bp 1 0.27796885319609 1 0.32160547375679 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744769 chr12:111744784 synonymous SNV . 0 36 hm5C_associated_SNPs_29763 0 0 0 0 1 exosome 1 0.500231643922349 1 0.999536712155303 hm5C_site_29998 DeepMRMD:1;iRNA_m5C:0.999536712155303 29999 chr12 111744784 111744784 1 + G A LUSC 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCCGCGCTGGCCTCCAAAGACAGGGAGATCC < 41bp 1 0.0294584625917605 1 0.150093466043472 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744784 synonymous SNV . 0 28 hm5C_associated_SNPs_29764 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_29999 DeepMRMD:1;iRNA_m5C:0.999536712157815 30000 chr12 111744784 111744784 1 + G A LUSC 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCCGCGCTGGCCTCCAAAGACAGGGAGATCCT < 41bp 1 0.55240417733112 1 0.962910413742065 experiment 0.89519164533776 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744784 synonymous SNV . 0 27 hm5C_associated_SNPs_29765 0 0 0 0 1 exosome 1 0.500231643922809 0.07417917251587 0.999536712154382 hm5C_site_30000 DeepMRMD:0.07417917251587;iRNA_m5C:0.999536712154382 30001 chr12 111744784 111744784 1 + G A LUSC 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCCGCGCTGGCCTCCAAAGACAGGGAGATCCTGC < 41bp 1 0.37302826926081 1 0.718046426773071 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744784 synonymous SNV . 0 25 hm5C_associated_SNPs_29766 0 0 0 0 1 exosome 1 0.50023153858563 0.563907146453858 0.99953692282874 hm5C_site_30001 DeepMRMD:0.563907146453858;iRNA_m5C:0.99953692282874 30002 chr12 111744784 111744784 1 + G A LUSC 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCCGCGCTGGCCTCCAAAGACAGGGAGATCCTGCG < 41bp 1 0.199794120304163 1 0.850260496139526 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744784 synonymous SNV . 0 24 hm5C_associated_SNPs_29767 0 0 0 0 1 exosome 1 0.500231644058599 0.299479007720948 0.999536711882802 hm5C_site_30002 DeepMRMD:0.299479007720948;iRNA_m5C:0.999536711882802 30003 chr14 64898345 64898345 1 + C T LUSC 64898346 + 64898326 64898366 41 GGATATTTCATGAACTGACCCAGACAGACAAGGTAGGATGC GGATATTTCATGAACTGACTCAGACAGACAAGGTAGGATGC < 41bp 1 0.302984897461461 1 0.213146090507507 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64898346 chr14:64898345 synonymous SNV . 0 20 hm5C_associated_SNPs_29768 0 0 1 0 2 Nucleus 1 0.500231643919009 1 0.999536712161983 hm5C_site_30003 DeepMRMD:1;iRNA_m5C:0.999536712161983 30004 chr14 64898345 64898345 1 + C T LUSC 64898350 + 64898330 64898370 41 ATTTCATGAACTGACCCAGACAGACAAGGTAGGATGCCAAA ATTTCATGAACTGACTCAGACAGACAAGGTAGGATGCCAAA < 41bp 1 0.300917753365056 1 0.15534970164299 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64898350 chr14:64898345 synonymous SNV . 0 16 hm5C_associated_SNPs_29769 0 0 1 0 2 Nucleus 1 0.500231643887093 1 0.999536712225815 hm5C_site_30004 DeepMRMD:1;iRNA_m5C:0.999536712225815 30005 chr5 14498737 14498737 1 + C T LUSC 14498746 + 14498726 14498766 41 CGTCGGCCAGCCTGAGGGTCCTAGGTAAGCACCGTGCAACG CGTCGGCCAGCTTGAGGGTCCTAGGTAAGCACCGTGCAACG < 41bp 1 0.376823394196964 1 0.144581735134125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14498746 chr5:14498737 synonymous SNV . 0 12 hm5C_associated_SNPs_29770 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30005 DeepMRMD:1;iRNA_m5C:0.999536712157815 30006 chr11 65062097 65062097 1 + C T LUSC 65062109 + 65062089 65062129 41 CTGCTTTTCCACCTGGGGGCCGAGGAGATCAGTAGGTAAGA CTGCTTTTTCACCTGGGGGCCGAGGAGATCAGTAGGTAAGA < 41bp 1 0.538060648210143 1 0.713124930858612 experiment 0.923878703579714 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65062109 chr11:65062097 synonymous SNV . 0 9 hm5C_associated_SNPs_29771 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164392109 0.573750138282776 0.999536712157819 hm5C_site_30006 DeepMRMD:0.573750138282776;iRNA_m5C:0.999536712157819 30007 chr15 99672261 99672261 1 + G A LUSC 99672281 + 99672261 99672301 41 GGAGATTATTTTTCAGGGCCCCATTTCTGCTGCAGGGAAGG AGAGATTATTTTTCAGGGCCCCATTTCTGCTGCAGGGAAGG < 41bp 1 0.00747116626416319 1 0.0519669353961945 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99672281 chr15:99672261 synonymous SNV . 0 1 hm5C_associated_SNPs_29772 0 0 0 0 0 exosome 1 0.500231643925879 1 0.999536712148241 hm5C_site_30007 DeepMRMD:1;iRNA_m5C:0.999536712148241 30008 chr10 12162808 12162808 1 + C T LUSC 12162801 + 12162781 12162821 41 TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC TATAGCTCCGTCTGGTGGGCCGGCCCCTTTTGCCAGTACCC < 41bp 1 0.151864017364458 1 0.64630514383316 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12162801 chr10:12162808 nonsynonymous SNV 0.985 1 28 hm5C_associated_SNPs_29773 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.70738971233368 0.999536712157815 hm5C_site_30008 DeepMRMD:0.70738971233368;iRNA_m5C:0.999536712157815 30009 chr6 145157481 145157481 1 + G A LUSC 145157491 + 145157471 145157511 41 CAGCACCTCCGAAGGGGGCTCCCTGTCGGTTCACCGCCAGA CAGCACCTCCAAAGGGGGCTCCCTGTCGGTTCACCGCCAGA < 41bp 1 0.0525889440833629 1 0.23792564868927 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145157491 chr6:145157481 nonsynonymous SNV 0.991 0 11 hm5C_associated_SNPs_29774 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30009 DeepMRMD:1;iRNA_m5C:0.999536712157815 30010 chr19 39196706 39196706 1 + C T LUSC 39196704 + 39196684 39196724 41 AGACCTCGGCCAAGGAAGGGCTCCTTCTCTGGTGCCAGAGA AGACCTCGGCCAAGGAAGGGCTTCTTCTCTGGTGCCAGAGA < 41bp 1 0.0465839089655632 1 0.16102933883667 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39196704 chr19:39196706 synonymous SNV . 0 23 hm5C_associated_SNPs_29775 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30010 DeepMRMD:1;iRNA_m5C:0.999536712157815 30011 chr19 41510013 41510013 1 + G C LUSC 41510016 + 41509996 41510036 41 CTTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT CTTGTGGACAAGGCTGACGCCTTCTCTGGCCGGGGAAAAAT < 41bp 1 0.212063625059775 1 0.0892616212368011 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510016 chr19:41510013 nonsynonymous SNV 0.166 0 18 hm5C_associated_SNPs_29776 0 0 0 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_30011 DeepMRMD:1;iRNA_m5C:0.999536712157812 30012 chr7 94293196 94293196 1 + G A LUSC 94293216 + 94293196 94293236 41 GATTTCTCAGTTGATCGTGTCCGTGTCTGCTTCGTGACAAG AATTTCTCAGTTGATCGTGTCCGTGTCTGCTTCGTGACAAG < 41bp 1 0.178291923693342 1 0.0404290556907654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PEG10 ENSG00000242265 CDS Human protein_coding chr7:94293216 chr7:94293196 nonsynonymous SNV 0.987 1 1 hm5C_associated_SNPs_29777 0 0 1 0 0 Endoplasmic reticulum 1 0.50022793433306 1 0.999544131333881 hm5C_site_30012 DeepMRMD:1;iRNA_m5C:0.999544131333881 30013 chr16 30081499 30081499 1 + G C LUSC 30081505 + 30081485 30081525 41 TGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACG TGGGGCTGCTGCCACCGAGTCCCTCTTCGTCTCTAACCACG < 41bp 1 0.0609171114170109 1 0.0553370416164398 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081505 chr16:30081499 nonsynonymous SNV 0.986 1 15 hm5C_associated_SNPs_29778 0 0 1 0 1 Cytosol 1 0.500231643882314 1 0.999536712235373 hm5C_site_30013 DeepMRMD:1;iRNA_m5C:0.999536712235373 30014 chr16 30081499 30081499 1 + G C LUSC 30081506 + 30081486 30081526 41 GGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGC GGGGCTGCTGCCACCGAGTCCCTCTTCGTCTCTAACCACGC < 41bp 1 0.0480661172093564 1 0.0564676523208618 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081506 chr16:30081499 nonsynonymous SNV 0.986 1 14 hm5C_associated_SNPs_29779 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30014 DeepMRMD:1;iRNA_m5C:0.999536712157815 30015 chr16 30081499 30081499 1 + G C LUSC 30081507 + 30081487 30081527 41 GGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCC GGGCTGCTGCCACCGAGTCCCTCTTCGTCTCTAACCACGCC < 41bp 1 0.165536895810781 1 0.0583580434322357 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081507 chr16:30081499 nonsynonymous SNV 0.986 1 13 hm5C_associated_SNPs_29780 0 0 1 0 1 Cytosol 1 0.500231643921783 1 0.999536712156433 hm5C_site_30015 DeepMRMD:1;iRNA_m5C:0.999536712156433 30016 chr16 30081499 30081499 1 + G C LUSC 30081509 + 30081489 30081529 41 GCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCCTA GCTGCTGCCACCGAGTCCCTCTTCGTCTCTAACCACGCCTA < 41bp 1 0.433706638052606 1 0.108430206775665 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081509 chr16:30081499 nonsynonymous SNV 0.986 1 11 hm5C_associated_SNPs_29781 0 0 1 0 1 Cytosol 1 0.500231643877053 1 0.999536712245893 hm5C_site_30016 DeepMRMD:1;iRNA_m5C:0.999536712245893 30017 chr4 126238160 126238160 1 + G T LUSC 126238148 + 126238128 126238168 41 GACATCACCCTGAACCCGAGCGGCGAGGGAGCGTTCCTGCA GACATCACCCTGAACCCGAGCGGCGAGGGAGCTTTCCTGCA < 41bp 1 0.445991966789278 1 0.718385815620422 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126238148 chr4:126238160 synonymous SNV . 0 33 hm5C_associated_SNPs_29782 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.563228368759156 0.999536712157815 hm5C_site_30017 DeepMRMD:0.563228368759156;iRNA_m5C:0.999536712157815 30018 chr1 161130562 161130562 1 + G A LUSC 161130542 + 161130522 161130562 41 CCAGGGCCCGCAGCAAGGAGCGCAGAAACCCAGCCTCTGGG CCAGGGCCCGCAGCAAGGAGCGCAGAAACCCAGCCTCTGGA < 41bp 1 0.572935559521925 1 0.401352345943451 experiment 0.85412888095615 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161130542 chr1:161130562 synonymous SNV . 0 41 hm5C_associated_SNPs_29783 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30018 DeepMRMD:1;iRNA_m5C:0.999536712157815 30019 chr14 90437544 90437544 1 + G C LUSC 90437526 + 90437506 90437546 41 GCTCTCTTTTTAGGAAGAAGCCAATCCTGCTTGTGCATGGT GCTCTCTTTTTAGGAAGAAGCCAATCCTGCTTGTGCATCGT < 41bp 1 0.0751261118822275 1 0.125435292720795 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TDP1 ENSG00000042088 CDS Human protein_coding chr14:90437526 chr14:90437544 nonsynonymous SNV 0.987 4 39 hm5C_associated_SNPs_29784 0 0 1 0 2 chromatin 1 0.500231643921075 1 0.999536712157849 hm5C_site_30019 DeepMRMD:1;iRNA_m5C:0.999536712157849 30020 chr5 65350657 65350657 1 + A G LUSC 65350670 + 65350650 65350690 41 TCCTTCAAAAAGACCAAATGCAAGGGTTGGTTCTGAGCATT TCCTTCAGAAAGACCAAATGCAAGGGTTGGTTCTGAGCATT < 41bp 1 0.621135234752317 1 0.266947865486145 experiment 0.757729530495365 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ERBIN ENSG00000112851 CDS Human protein_coding chr5:65350670 chr5:65350657 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_29785 0 0 1 0 0 Nucleus 1 0.500231643920791 1 0.999536712158418 hm5C_site_30020 DeepMRMD:1;iRNA_m5C:0.999536712158418 30021 chr10 103826716 103826716 1 + G T LUSC 103826735 + 103826715 103826755 41 GGACTGAGTTGATAGGAGACCAGCTAGCCCAGCTCAACACC GTACTGAGTTGATAGGAGACCAGCTAGCCCAGCTCAACACC < 41bp 1 0.46219107529309 1 0.188783317804337 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HPS6 ENSG00000166189 CDS Human protein_coding chr10:103826735 chr10:103826716 nonsynonymous SNV 0.749 0 2 hm5C_associated_SNPs_29786 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30021 DeepMRMD:1;iRNA_m5C:0.999536712157815 30022 chr22 38282852 38282852 1 + G C LUSC 38282832 + 38282812 38282852 41 ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAG ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAC < 41bp 1 0.411579182622846 1 0.734990000724792 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38282832 chr22:38282852 nonsynonymous SNV 0.993 1 41 hm5C_associated_SNPs_29787 0 0 1 0 2 Cytosol 1 0.500231643921092 0.530019998550416 0.999536712157815 hm5C_site_30022 DeepMRMD:0.530019998550416;iRNA_m5C:0.999536712157815 30023 chr20 4679913 4679913 1 + G C LUSC 4679908 + 4679888 4679928 41 ATGCTGGTTCTCTTTGTGGCCACATGGAGTGACCTGGGCCT ATGCTGGTTCTCTTTGTGGCCACATCGAGTGACCTGGGCCT < 41bp 1 0.546881538825059 1 0.597430348396301 experiment 0.906236922349882 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRNP ENSG00000171867 CDS Human protein_coding chr20:4679908 chr20:4679913 nonsynonymous SNV 0.999 2 26 hm5C_associated_SNPs_29788 0 0 1 0 1 Ribosome 1 0.500231655452742 0.805139303207398 0.999536689094515 hm5C_site_30023 DeepMRMD:0.805139303207398;iRNA_m5C:0.999536689094515 30024 chr20 39746907 39746907 1 + G C LUSC 39746895 + 39746875 39746915 41 GTAACCATCAGAGGGCACCACCAAAAACTTTTGAGAAGTCT GTAACCATCAGAGGGCACCACCAAAAACTTTTCAGAAGTCT < 41bp 1 0.192491776843362 1 0.240773171186447 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39746895 chr20:39746907 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_29789 0 0 0 0 2 Nucleus 1 0.500231643909169 1 0.999536712181663 hm5C_site_30024 DeepMRMD:1;iRNA_m5C:0.999536712181663 30025 chr11 44626970 44626970 1 + C A LUSC 44626956 + 44626936 44626976 41 CCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGC CCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAAAATGGGC < 41bp 1 0.078916223427483 1 0.0518943965435028 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44626956 chr11:44626970 nonsynonymous SNV 0.631 1 35 hm5C_associated_SNPs_29790 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30025 DeepMRMD:1;iRNA_m5C:0.999536712157815 30026 chr10 104160448 104160448 1 + G T LUSC 104160433 + 104160413 104160453 41 ACTGTATCCAGTACACCTGGCAGTCCGAGCCCGAAGCCCTG ACTGTATCCAGTACACCTGGCAGTCCGAGCCCGAATCCCTG < 41bp 1 0.0687879151580524 1 0.0229989290237427 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160433 chr10:104160448 nonsynonymous SNV 0.959 4 36 hm5C_associated_SNPs_29791 0 0 0 0 1 chromatin 1 0.500231643921063 1 0.999536712157874 hm5C_site_30026 DeepMRMD:1;iRNA_m5C:0.999536712157874 30027 chr20 30822388 30822388 1 + G C LUSC 30822376 + 30822356 30822396 41 CTGTGTCTCCTCCTTCACTGCCTTTGTGAAGCGGGAGCGGG CTGTGTCTCCTCCTTCACTGCCTTTGTGAAGCCGGAGCGGG < 41bp 1 0.0505084434600768 1 0.0523304045200348 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POFUT1 ENSG00000101346 CDS Human protein_coding chr20:30822376 chr20:30822388 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_29792 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30027 DeepMRMD:1;iRNA_m5C:0.999536712157815 30028 chr5 139917046 139917046 1 + C A LUSC 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATACCTCCCCAAATTGGAACAGAGAGACTGGCCCGAATTC < 41bp 1 0.261647533138294 1 0.671898066997528 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917046 nonsynonymous SNV 0.846 4 12 hm5C_associated_SNPs_29793 0 0 1 0 1 unknown 1 0.500231643921092 0.656203866004944 0.999536712157815 hm5C_site_30028 DeepMRMD:0.656203866004944;iRNA_m5C:0.999536712157815 30029 chrX 47424386 47424386 1 + A G LUSC 47424395 + 47424375 47424415 41 TGGCATCAGGTACGGAAGACCTTCTTCAGCCTGGCGTTCTG TGGCATCAGGTGCGGAAGACCTTCTTCAGCCTGGCGTTCTG < 41bp 1 0.364265871590796 1 0.331089496612549 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARAF ENSG00000078061 CDS Human protein_coding chrX:47424395 chrX:47424386 synonymous SNV . 0 12 hm5C_associated_SNPs_29794 0 0 1 0 1 Cytosol 1 0.500231643921 1 0.999536712158 hm5C_site_30029 DeepMRMD:1;iRNA_m5C:0.999536712158 30030 chrX 153533740 153533740 1 + G T LUSC 153533726 + 153533706 153533746 41 TCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG TCTACATCATGAGGTACAAGCAGTCAGATCCAGATAATCCG < 41bp 1 0.18512669018532 1 0.264067858457565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533726 chrX:153533740 nonsynonymous SNV 0.033 0 35 hm5C_associated_SNPs_29796 0 0 0 0 3 exosome 1 0.500231643923162 1 0.999536712153676 hm5C_site_30030 DeepMRMD:1;iRNA_m5C:0.999536712153676 30031 chr13 92051426 92051426 1 + G T LUSC 92051411 + 92051391 92051431 41 GAAGAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC GAAGAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTTGGAGC < 41bp 1 0.490906478756937 1 0.779156088829041 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC5 ENSG00000179399 CDS Human protein_coding chr13:92051411 chr13:92051426 synonymous SNV . 0 36 hm5C_associated_SNPs_29797 0 0 0 0 1 Nucleus 1 0.500231643921092 0.441687822341918 0.999536712157815 hm5C_site_30031 DeepMRMD:0.441687822341918;iRNA_m5C:0.999536712157815 30032 chr19 38572479 38572479 1 + G T LUSC 38572464 + 38572444 38572484 41 GCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTG GCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGTCCCTG < 41bp 1 0.126303818071826 1 0.161691904067993 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572464 chr19:38572479 nonsynonymous SNV 0.993 1 36 hm5C_associated_SNPs_29799 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_30032 DeepMRMD:1;iRNA_m5C:0.999536712157814 30033 chr19 38572479 38572479 1 + G T LUSC 38572465 + 38572445 38572485 41 CGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGA CGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGTCCCTGA < 41bp 1 0.232504566779129 1 0.163309246301651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572465 chr19:38572479 nonsynonymous SNV 0.993 1 35 hm5C_associated_SNPs_29800 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30033 DeepMRMD:1;iRNA_m5C:0.999536712157815 30034 chr19 38572479 38572479 1 + G T LUSC 38572467 + 38572447 38572487 41 CAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGA CAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGTCCCTGAGA < 41bp 1 0.215681034054531 1 0.465137004852295 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572467 chr19:38572479 nonsynonymous SNV 0.993 1 33 hm5C_associated_SNPs_29801 0 0 0 0 0 Ribosome 1 0.500231643921087 1 0.999536712157826 hm5C_site_30034 DeepMRMD:1;iRNA_m5C:0.999536712157826 30035 chr19 38572479 38572479 1 + G T LUSC 38572468 + 38572448 38572488 41 AAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAG AAGGGTGGCCGACTGGCCGCCCAAGCGGGAGTCCCTGAGAG < 41bp 1 0.0788752709563081 1 0.698476552963257 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572468 chr19:38572479 nonsynonymous SNV 0.993 1 32 hm5C_associated_SNPs_29802 0 0 0 0 0 Ribosome 1 0.500229897555931 0.603046894073486 0.999540204888138 hm5C_site_30035 DeepMRMD:0.603046894073486;iRNA_m5C:0.999540204888138 30036 chr19 38572479 38572479 1 + G T LUSC 38572469 + 38572449 38572489 41 AGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAGA AGGGTGGCCGACTGGCCGCCCAAGCGGGAGTCCCTGAGAGA < 41bp 1 0.187756271396042 1 0.499751448631287 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572469 chr19:38572479 nonsynonymous SNV 0.993 1 31 hm5C_associated_SNPs_29803 0 0 0 0 0 Ribosome 1 0.500231643921267 1 0.999536712157465 hm5C_site_30036 DeepMRMD:1;iRNA_m5C:0.999536712157465 30037 chr2 54856343 54856343 1 + G C LUSC 54856361 + 54856341 54856381 41 CAGTGGCCACTTTGAGCAGGCCATCAAGGAAGGCGAAGACA CACTGGCCACTTTGAGCAGGCCATCAAGGAAGGCGAAGACA < 41bp 1 0.0165325450269088 1 0.0498818159103394 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54856361 chr2:54856343 nonsynonymous SNV 0.996 1 3 hm5C_associated_SNPs_29804 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30037 DeepMRMD:1;iRNA_m5C:0.999536712157815 30038 chr2 54856343 54856343 1 + G C LUSC 54856362 + 54856342 54856382 41 AGTGGCCACTTTGAGCAGGCCATCAAGGAAGGCGAAGACAT ACTGGCCACTTTGAGCAGGCCATCAAGGAAGGCGAAGACAT < 41bp 1 0.297520717284024 1 0.0590193271636963 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54856362 chr2:54856343 nonsynonymous SNV 0.996 1 2 hm5C_associated_SNPs_29805 0 0 1 0 0 Nucleus 1 0.500231644181735 1 0.999536711636529 hm5C_site_30038 DeepMRMD:1;iRNA_m5C:0.999536711636529 30039 chr13 28197120 28197120 1 + C T LUSC 28197130 + 28197110 28197150 41 TTGTATTGCACGAGGAAGACCATACCCTAGGAAATTCTCTA TTGTATTGCATGAGGAAGACCATACCCTAGGAAATTCTCTA < 41bp 1 0.0365551179816335 1 0.121605843305588 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1D ENSG00000186184 CDS Human protein_coding chr13:28197130 chr13:28197120 synonymous SNV . 0 11 hm5C_associated_SNPs_29806 0 0 1 0 0 Ribosome 1 0.50023164267395 1 0.9995367146521 hm5C_site_30039 DeepMRMD:1;iRNA_m5C:0.9995367146521 30040 chr16 3339554 3339554 1 + G C LUSC 3339545 + 3339525 3339565 41 GGTCGCAAGGGGATTGGGCGCCTCCCCCAGAGGGTGGAATG GGTCGCAAGGGGATTGGGCGCCTCCCCCACAGGGTGGAATG < 41bp 1 0.0820634019027251 1 0.0905720889568329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3339545 chr16:3339554 nonsynonymous SNV 0.300 0 30 hm5C_associated_SNPs_29807 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30040 DeepMRMD:1;iRNA_m5C:0.999536712157815 30041 chr16 3339554 3339554 1 + G C LUSC 3339549 + 3339529 3339569 41 GCAAGGGGATTGGGCGCCTCCCCCAGAGGGTGGAATGGAGC GCAAGGGGATTGGGCGCCTCCCCCACAGGGTGGAATGGAGC < 41bp 1 0.482861991060737 1 0.517492055892944 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3339549 chr16:3339554 nonsynonymous SNV 0.300 0 26 hm5C_associated_SNPs_29808 0 0 1 0 0 Cytosol 1 0.500231643921093 0.965015888214112 0.999536712157815 hm5C_site_30041 DeepMRMD:0.965015888214112;iRNA_m5C:0.999536712157815 30042 chr14 73637516 73637516 1 + A G LUSC 73637529 + 73637509 73637549 41 ACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTT ACAATAGGGAACGGCAGGAGCACAACGACAGACGGAGCCTT < 41bp 1 0.692378403945098 1 0.224523484706879 experiment 0.615243192109804 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637529 chr14:73637516 synonymous SNV . 0 8 hm5C_associated_SNPs_29809 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30042 DeepMRMD:1;iRNA_m5C:0.999536712157815 30043 chr14 73637516 73637516 1 + A G LUSC 73637531 + 73637511 73637551 41 AATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG AATAGGGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG < 41bp 1 0.642139980111368 1 0.293925404548645 experiment 0.715720039777265 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637531 chr14:73637516 synonymous SNV . 0 6 hm5C_associated_SNPs_29810 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30043 DeepMRMD:1;iRNA_m5C:0.999536712157815 30044 chr3 50131258 50131258 1 + A G LUSC 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGGGCAAGACCATCATGCTGCGCGGCCTTCCCAT < 41bp 1 0.507773673200949 1 0.424188315868378 experiment 0.984452653598101 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131258 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_29811 0 0 1 0 2 Cytosol 1 0.500231643921325 1 0.99953671215735 hm5C_site_30044 DeepMRMD:1;iRNA_m5C:0.99953671215735 30045 chr10 71146157 71146157 1 + G T LUSC 71146158 + 71146138 71146178 41 AGTCACCTTACTAAGGGATGCGATAAAAAGGAGAGAGGTAA AGTCACCTTACTAAGGGATTCGATAAAAAGGAGAGAGGTAA < 41bp 1 0.243563704952648 1 0.358639746904373 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71146158 chr10:71146157 nonsynonymous SNV 0.552 3 20 hm5C_associated_SNPs_29812 0 0 1 0 2 chromatin 1 0.500231643921003 1 0.999536712157995 hm5C_site_30045 DeepMRMD:1;iRNA_m5C:0.999536712157995 30046 chr5 7885876 7885876 1 + T C LUSC 7885861 + 7885841 7885881 41 GATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGT GATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCCGAGGT < 41bp 1 0.290767752942409 1 0.0379151403903961 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885861 chr5:7885876 synonymous SNV . 0 36 hm5C_associated_SNPs_29813 0 0 1 0 1 Nucleus 1 0.500231643125524 1 0.999536713748952 hm5C_site_30046 DeepMRMD:1;iRNA_m5C:0.999536713748952 30047 chr5 7885876 7885876 1 + T C LUSC 7885862 + 7885842 7885882 41 ATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTA ATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCCGAGGTA < 41bp 1 0.221402131354659 1 0.0805935561656952 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885862 chr5:7885876 synonymous SNV . 0 35 hm5C_associated_SNPs_29814 0 0 1 0 1 Nucleus 1 0.500231643921135 1 0.999536712157729 hm5C_site_30047 DeepMRMD:1;iRNA_m5C:0.999536712157729 30048 chr5 7885876 7885876 1 + T C LUSC 7885863 + 7885843 7885883 41 TGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTAC TGCCTTCAGCGTGATCTGCCCTAACAGTGATTCCGAGGTAC < 41bp 1 0.302729238253002 1 0.0496813356876373 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885863 chr5:7885876 synonymous SNV . 0 34 hm5C_associated_SNPs_29815 0 0 1 0 1 Nucleus 1 0.500231643401037 1 0.999536713197927 hm5C_site_30048 DeepMRMD:1;iRNA_m5C:0.999536713197927 30049 chr5 7885876 7885876 1 + T C LUSC 7885875 + 7885855 7885895 41 GATCTGCCCTAACAGTGATTCTGAGGTACAAAGCCTACTCC GATCTGCCCTAACAGTGATTCCGAGGTACAAAGCCTACTCC < 41bp 1 0.570272441136896 1 0.700427949428558 experiment 0.859455117726208 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885875 chr5:7885876 synonymous SNV . 0 22 hm5C_associated_SNPs_29816 0 0 1 0 1 Nucleus 1 0.500231643920739 0.599144101142884 0.999536712158522 hm5C_site_30049 DeepMRMD:0.599144101142884;iRNA_m5C:0.999536712158522 30050 chr19 33605294 33605294 1 + A T LUSC 33605274 + 33605254 33605294 41 CCACCTAAACAACAGTCCAGCCCCTTAGTAAACAAAGAGGA CCACCTAAACAACAGTCCAGCCCCTTAGTAAACAAAGAGGT < 41bp 1 0.0706666513917039 1 0.0660060048103333 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33605274 chr19:33605294 nonsynonymous SNV 0.110 0 41 hm5C_associated_SNPs_29817 0 0 1 0 1 Cytosol 1 0.500231644154591 1 0.999536711690818 hm5C_site_30050 DeepMRMD:1;iRNA_m5C:0.999536711690818 30051 chr1 235543450 235543450 1 + T C LUSC 235543456 + 235543436 235543476 41 TTTTGCTGGTGTTGTCCCTCCCGTGGCAGGTAAGCAATTAT TTTTGCTGGTGTTGCCCCTCCCGTGGCAGGTAAGCAATTAT < 41bp 1 0.170251775650868 1 0.583945035934448 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235543456 chr1:235543450 nonsynonymous SNV 0.373 5 15 hm5C_associated_SNPs_29818 0 0 1 0 1 chromatin 1 0.500231643921092 0.832109928131104 0.999536712157815 hm5C_site_30051 DeepMRMD:0.832109928131104;iRNA_m5C:0.999536712157815 30052 chr8 133855001 133855001 1 + G A LUSC 133855017 + 133854997 133855037 41 TCTCGCAGACCCTGGGAGCTCAGATGATGATGATGTTAGTA TCTCACAGACCCTGGGAGCTCAGATGATGATGATGTTAGTA < 41bp 1 0.521829533908322 1 0.583106398582458 experiment 0.956340932183355 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133855017 chr8:133855001 nonsynonymous SNV 0.256 0 5 hm5C_associated_SNPs_29819 0 0 1 0 0 Nucleus 1 0.5002316526765 0.833787202835084 0.999536694646999 hm5C_site_30052 DeepMRMD:0.833787202835084;iRNA_m5C:0.999536694646999 30053 chr9 78506222 78506222 1 + A G LUSC 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAGAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT < 41bp 1 0.0573210426248113 1 0.0337262153625488 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506222 nonsynonymous SNV 0.998 0 8 hm5C_associated_SNPs_29820 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30053 DeepMRMD:1;iRNA_m5C:0.999536712157815 30054 chr16 24580538 24580538 1 + A G LUSC 24580557 + 24580537 24580577 41 TAAAGGTTATGCTGCTGGAGCACAGCCTAGACCCTCAGCAA TGAAGGTTATGCTGCTGGAGCACAGCCTAGACCCTCAGCAA < 41bp 1 0.30231829263749 1 0.340334236621857 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBBP6 ENSG00000122257 CDS Human protein_coding chr16:24580557 chr16:24580538 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_29821 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30054 DeepMRMD:1;iRNA_m5C:0.999536712157815 30055 chr11 68204464 68204464 1 + T C LUSC 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACGGCTCCGACGAGCTCATGCGTGGTG < 41bp 1 0.147807974995742 1 0.0969032645225525 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204464 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_29822 0 0 0 0 1 Endoplasmic reticulum 1 0.5002316439211 1 0.9995367121578 hm5C_site_30055 DeepMRMD:1;iRNA_m5C:0.9995367121578 30056 chr11 68204464 68204464 1 + T C LUSC 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACGGCTCCGACGAGCTCATGCGTGGTGA < 41bp 1 0.418864959571918 1 0.343288421630859 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204464 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_29823 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643978591 1 0.999536712042819 hm5C_site_30056 DeepMRMD:1;iRNA_m5C:0.999536712042819 30057 chr3 186504021 186504021 1 + C G LUSC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATGAAAT < 41bp 1 0.151228274736849 1 0.204333871603012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504021 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_29824 0 0 1 6 2 Nucleus 1 0.500231680957822 1 0.999536638084357 hm5C_site_30057 DeepMRMD:1;iRNA_m5C:0.999536638084357 30058 chr19 36124064 36124064 1 + T G LUSC 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCGGGGCCCCCT < 41bp 1 0.246638777642147 1 0.061575710773468 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124064 synonymous SNV . 0 32 hm5C_associated_SNPs_29825 0 0 1 0 4 Ribosome 1 0.500231643926455 1 0.99953671214709 hm5C_site_30058 DeepMRMD:1;iRNA_m5C:0.99953671214709 30059 chr10 17278303 17278303 1 + G T LUSC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTTGATTCACTCCCTCTGGTTGATACCCACTCAAAA < 41bp 1 0.273901106176118 1 0.714184761047363 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278303 synonymous SNV . 0 8 hm5C_associated_SNPs_29826 0 0 1 0 2 Ribosome 1 0.500231643916986 0.571630477905274 0.999536712166029 hm5C_site_30059 DeepMRMD:0.571630477905274;iRNA_m5C:0.999536712166029 30060 chr10 17278304 17278304 1 + G T LUSC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGTATTCACTCCCTCTGGTTGATACCCACTCAAAA < 41bp 1 0.25027204857785 1 0.724134087562561 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278304 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_29827 0 0 1 0 2 Ribosome 1 0.500231646056778 0.551731824874878 0.999536707886444 hm5C_site_30060 DeepMRMD:0.551731824874878;iRNA_m5C:0.999536707886444 30061 chr3 184038429 184038429 1 + A T LUSC 184038413 + 184038393 184038433 41 TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCGAGATC TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCGTGATC < 41bp 1 0.142685697114709 1 0.425442755222321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184038413 chr3:184038429 synonymous SNV . 0 37 hm5C_associated_SNPs_29828 0 0 1 0 1 Nucleus 1 0.500231643921147 1 0.999536712157707 hm5C_site_30061 DeepMRMD:1;iRNA_m5C:0.999536712157707 30062 chr12 6638690 6638690 1 + C G LUSC 6638688 + 6638668 6638708 41 CCTTCCTGCAGACAGCTCCTCTCCTACATCACCAAGGACAA CCTTCCTGCAGACAGCTCCTCTGCTACATCACCAAGGACAA < 41bp 1 0.327070604843095 1 0.048491358757019 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6638688 chr12:6638690 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_29829 0 0 1 0 2 Nucleus 1 0.50023164390864 1 0.999536712182719 hm5C_site_30062 DeepMRMD:1;iRNA_m5C:0.999536712182719 30063 chr7 135291499 135291499 1 + G T LUSC 135291502 + 135291482 135291522 41 GTGATTTCTGCATTAAGGATCAGAACTTGAAAAGAAATTAG GTGATTTCTGCATTAAGTATCAGAACTTGAAAAGAAATTAG < 41bp 1 0.25362006236913 1 0.773101210594177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291502 chr7:135291499 nonsynonymous SNV 0.809 0 18 hm5C_associated_SNPs_29830 0 0 1 0 1 Cytosol 1 0.500231682092961 0.453797578811646 0.999536635814078 hm5C_site_30063 DeepMRMD:0.453797578811646;iRNA_m5C:0.999536635814078 30064 chr8 107754456 107754456 1 + G C LUSC 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTCGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC < 41bp 1 0.0737306699619948 1 0.0759952664375305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754456 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_29831 0 0 0 1 2 chromatin 1 0.500222805409707 1 0.999554389180586 hm5C_site_30064 DeepMRMD:1;iRNA_m5C:0.999554389180586 30065 chr8 107754456 107754456 1 + G C LUSC 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TCGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT < 41bp 1 0.163032190060178 1 0.0948624610900879 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754456 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_29832 0 0 0 1 2 chromatin 1 0.500320299857262 1 0.999359400285476 hm5C_site_30065 DeepMRMD:1;iRNA_m5C:0.999359400285476 30066 chr8 48874232 48874232 1 + A G LUSC 48874231 + 48874211 48874251 41 TTTCCAGCCCTCCCCAAATGCATTCTTCAGGTGCGTGTCTG TTTCCAGCCCTCCCCAAATGCGTTCTTCAGGTGCGTGTCTG < 41bp 1 0.107990341758117 1 0.0746995806694031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874231 chr8:48874232 nonsynonymous SNV 0.087 0 22 hm5C_associated_SNPs_29833 0 0 1 0 1 Cytosol 1 0.500231644128429 1 0.999536711743142 hm5C_site_30066 DeepMRMD:1;iRNA_m5C:0.999536711743142 30067 chr14 100367334 100367334 1 + T G LUSC 100367316 + 100367296 100367336 41 TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGTTT TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGGTT < 41bp 1 0.218335815579327 1 0.255189836025238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367316 chr14:100367334 synonymous SNV . 0 39 hm5C_associated_SNPs_29834 0 0 1 0 2 Nucleus 1 0.500231644848209 1 0.999536710303582 hm5C_site_30067 DeepMRMD:1;iRNA_m5C:0.999536710303582 30068 chr22 29533335 29533335 1 + G A LUSC 29533346 + 29533326 29533366 41 ACAGCTCTCGTGGGCGCCTGCGGTGGGAACTACTCAGCCAT ACAGCTCTCATGGGCGCCTGCGGTGGGAACTACTCAGCCAT < 41bp 1 0.461849558626202 1 0.566617488861084 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533346 chr22:29533335 nonsynonymous SNV 0.707 1 10 hm5C_associated_SNPs_29835 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921055 0.866765022277832 0.99953671215789 hm5C_site_30068 DeepMRMD:0.866765022277832;iRNA_m5C:0.99953671215789 30069 chr17 79414117 79414117 1 + A C LUSC 79414114 + 79414094 79414134 41 GGCCTGGGCTTCTCCCTACCCTCAGACGTGCACTCTTCTAA GGCCTGGGCTTCTCCCTACCCTCCGACGTGCACTCTTCTAA < 41bp 1 0.393564176681317 1 0.763557553291321 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79414114 chr17:79414117 synonymous SNV . 0 24 hm5C_associated_SNPs_29836 0 0 1 0 1 chromatin 1 0.500231643921625 0.472884893417358 0.99953671215675 hm5C_site_30069 DeepMRMD:0.472884893417358;iRNA_m5C:0.99953671215675 30070 chr6 57012772 57012772 1 + G C LUSC 57012758 + 57012738 57012778 41 GAATATGTAAAACAGCACTGCATGTCTTTGGCAAGCCACAA GAATATGTAAAACAGCACTGCATGTCTTTGGCAACCCACAA < 41bp 1 0.0712998217195862 1 0.214650809764862 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF451 ENSG00000112200 CDS Human protein_coding chr6:57012758 chr6:57012772 nonsynonymous SNV 0.964 2 35 hm5C_associated_SNPs_29837 0 0 1 0 0 chromatin 1 0.50023159466121 1 0.999536810677579 hm5C_site_30070 DeepMRMD:1;iRNA_m5C:0.999536810677579 30071 chr20 279139 279139 1 + G T LUSC 279121 + 279101 279141 41 GGGATCTGGACCGGGGAGTACAAATGCGAGATCGAGCTGCG GGGATCTGGACCGGGGAGTACAAATGCGAGATCGAGCTTCG < 41bp 1 0.568626101274903 1 0.322286307811737 experiment 0.862747797450194 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZCCHC3 ENSG00000177764 CDS Human other chr20:279121 chr20:279139 synonymous SNV . 0 39 hm5C_associated_SNPs_29838 0 0 1 0 0 Cytosol 1 0.500231643918996 1 0.999536712162007 hm5C_site_30071 DeepMRMD:1;iRNA_m5C:0.999536712162007 30072 chr7 130021492 130021492 1 + G T LUSC 130021476 + 130021456 130021496 41 TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCA TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTTCCCA < 41bp 1 0.376557561780177 1 0.0597637593746185 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021476 chr7:130021492 nonsynonymous SNV 0.117 0 37 hm5C_associated_SNPs_29839 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30072 DeepMRMD:1;iRNA_m5C:0.999536712157815 30073 chr7 130021492 130021492 1 + G T LUSC 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCC < 41bp 1 0.0270879649151416 1 0.139881014823914 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021492 nonsynonymous SNV 0.117 0 24 hm5C_associated_SNPs_29840 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_30073 DeepMRMD:1;iRNA_m5C:0.999536712157815 30074 chr7 130021492 130021492 1 + G T LUSC 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCA < 41bp 1 0.215402459071568 1 0.208793759346008 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021492 nonsynonymous SNV 0.117 0 23 hm5C_associated_SNPs_29841 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921101 1 0.999536712157799 hm5C_site_30074 DeepMRMD:1;iRNA_m5C:0.999536712157799 30075 chr7 130021492 130021492 1 + G T LUSC 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCATCG < 41bp 1 0.393678839406885 1 0.515161037445068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021492 nonsynonymous SNV 0.117 0 20 hm5C_associated_SNPs_29842 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921066 0.969677925109864 0.999536712157868 hm5C_site_30075 DeepMRMD:0.969677925109864;iRNA_m5C:0.999536712157868 30076 chr7 130021492 130021492 1 + G T LUSC 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCATCGA < 41bp 1 0.370819689877212 1 0.161924540996552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021492 nonsynonymous SNV 0.117 0 19 hm5C_associated_SNPs_29843 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164379142 1 0.99953671241716 hm5C_site_30076 DeepMRMD:1;iRNA_m5C:0.99953671241716 30077 chr7 130021492 130021492 1 + G T LUSC 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCATCGACGT < 41bp 1 0.524704823219359 1 0.0777926743030548 experiment 0.950590353561282 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021492 nonsynonymous SNV 0.117 0 16 hm5C_associated_SNPs_29844 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643919868 1 0.999536712160265 hm5C_site_30077 DeepMRMD:1;iRNA_m5C:0.999536712160265 30078 chr7 130021492 130021492 1 + G T LUSC 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGGCCTTCCCACCCTGGCTCCCCCATCGACGTC < 41bp 1 0.646729059615543 1 0.253101170063019 experiment 0.706541880768914 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021492 nonsynonymous SNV 0.117 0 15 hm5C_associated_SNPs_29845 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920557 1 0.999536712158887 hm5C_site_30078 DeepMRMD:1;iRNA_m5C:0.999536712158887 30079 chr7 130021492 130021492 1 + G T LUSC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.194607471686936 1 0.117912411689758 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021492 nonsynonymous SNV 0.117 0 10 hm5C_associated_SNPs_29846 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164341018 1 0.99953671317964 hm5C_site_30079 DeepMRMD:1;iRNA_m5C:0.99953671317964 30080 chr7 130021492 130021492 1 + G T LUSC 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC < 41bp 1 0.191385698117965 1 0.0285266935825348 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021492 nonsynonymous SNV 0.117 0 8 hm5C_associated_SNPs_29847 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30080 DeepMRMD:1;iRNA_m5C:0.999536712157815 30081 chr7 130021492 130021492 1 + G T LUSC 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC < 41bp 1 0.391062507089755 1 0.205927699804306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021492 nonsynonymous SNV 0.117 0 7 hm5C_associated_SNPs_29848 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30081 DeepMRMD:1;iRNA_m5C:0.999536712157815 30082 chr7 130021492 130021492 1 + G T LUSC 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC < 41bp 1 0.0902242678380938 1 0.0823304653167725 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021492 nonsynonymous SNV 0.117 0 6 hm5C_associated_SNPs_29849 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30082 DeepMRMD:1;iRNA_m5C:0.999536712157815 30083 chr7 130021492 130021492 1 + G T LUSC 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT < 41bp 1 0.0432918389204473 1 0.316358089447021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021492 nonsynonymous SNV 0.117 0 5 hm5C_associated_SNPs_29850 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644474073 1 0.999536711051854 hm5C_site_30083 DeepMRMD:1;iRNA_m5C:0.999536711051854 30084 chr7 130021492 130021492 1 + G T LUSC 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTTCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT < 41bp 1 0.399939750774825 1 0.203863888978958 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021492 nonsynonymous SNV 0.117 0 4 hm5C_associated_SNPs_29851 0 0 0 0 2 Endoplasmic reticulum 1 0.500231638988065 1 0.999536722023871 hm5C_site_30084 DeepMRMD:1;iRNA_m5C:0.999536722023871 30085 chr5 5464632 5464632 1 + G T LUSC 5464638 + 5464618 5464658 41 CACTTCCTGTGCCTGGCCGACTCCCACCCTGTGCATCTGGC CACTTCCTGTGCCTTGCCGACTCCCACCCTGTGCATCTGGC < 41bp 1 0.142316033718031 1 0.253143131732941 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ICE1 ENSG00000164151 CDS Human protein_coding chr5:5464638 chr5:5464632 nonsynonymous SNV 0.966 3 15 hm5C_associated_SNPs_29854 0 0 1 0 0 Nucleus 1 0.500231643920968 1 0.999536712158065 hm5C_site_30085 DeepMRMD:1;iRNA_m5C:0.999536712158065 30086 chr2 233681609 233681609 1 + T C LUSC 233681615 + 233681595 233681635 41 AAGAGAGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGC AAGAGAGGCAGAAACGAGGGCAAAACGGGAAGAGGAAGAGC < 41bp 1 0.278251124997087 1 0.345849931240082 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681615 chr2:233681609 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_29855 0 0 1 0 1 Nucleus 1 0.500231664452857 1 0.999536671094285 hm5C_site_30086 DeepMRMD:1;iRNA_m5C:0.999536671094285 30087 chr2 109400076 109400076 1 + G T LUSC 109400063 + 109400043 109400083 41 TTTTTTCAGGGAGGAGATATCACCAAACATGATGGAACAGG TTTTTTCAGGGAGGAGATATCACCAAACATGATTGAACAGG < 41bp 1 0.648627031531292 1 0.499713212251663 experiment 0.702745936937415 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109400063 chr2:109400076 stopgain 0.997 0 34 hm5C_associated_SNPs_29856 0 0 1 0 1 Nucleus 1 0.500231643921276 1 0.999536712157448 hm5C_site_30087 DeepMRMD:1;iRNA_m5C:0.999536712157448 30088 chr19 19035055 19035055 1 + C G LUSC 19035045 + 19035025 19035065 41 CACATCCTTCCCGCCAGGACCTGCCAGATTCTGTGCATGAT CACATCCTTCCCGCCAGGACCTGCCAGATTGTGTGCATGAT < 41bp 1 0.184414267022263 1 0.105171382427216 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX49 ENSG00000105671 CDS Human protein_coding chr19:19035045 chr19:19035055 nonsynonymous SNV 0.997 1 31 hm5C_associated_SNPs_29857 0 0 1 2 2 Cytosol 1 0.500203635166665 1 0.99959272966667 hm5C_site_30088 DeepMRMD:1;iRNA_m5C:0.99959272966667 30089 chr15 57731493 57731493 1 + G T LUSC 57731482 + 57731462 57731502 41 CCCAGGTGTGCCCGCAGCGGCCACTGTCTCAGGAGCGCCGT CCCAGGTGTGCCCGCAGCGGCCACTGTCTCATGAGCGCCGT < 41bp 1 0.231897790719564 1 0.100522935390472 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57731482 chr15:57731493 nonsynonymous SNV 0.115 0 32 hm5C_associated_SNPs_29858 0 0 0 0 0 cytosol 1 0.500231634191215 1 0.999536731617571 hm5C_site_30089 DeepMRMD:1;iRNA_m5C:0.999536731617571 30090 chr9 79996916 79996916 1 + G A LUSC 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAAAGTCTGCGACCTCCTCGGTTCTTC < 41bp 1 0.468985523725108 1 0.443480342626572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996916 synonymous SNV . 0 17 hm5C_associated_SNPs_29859 0 0 1 0 2 Nucleus 1 0.500231915362897 1 0.999536169274206 hm5C_site_30090 DeepMRMD:1;iRNA_m5C:0.999536169274206 30091 chr3 183854505 183854505 1 + C T LUSC 183854500 + 183854480 183854520 41 TGTCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGAACATT TGTCTTTTGTTGCTGGAAAGCTGCTTAAATCAAAGAACATT < 41bp 1 0.411918078834918 1 0.323174476623535 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183854500 chr3:183854505 stopgain 1.000 1 26 hm5C_associated_SNPs_29860 0 0 1 0 1 Ribosome 1 0.500231643907257 1 0.999536712185485 hm5C_site_30091 DeepMRMD:1;iRNA_m5C:0.999536712185485 30092 chrX 153627899 153627899 1 + A T LUSC 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAGTTTCCGCTTTGTGGCCACTTGGTGTCAGATGAATAT < 41bp 1 0.158508103043697 1 0.180514931678772 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627899 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_29861 0 0 1 0 2 Cytosol 1 0.500232189167942 1 0.999535621664117 hm5C_site_30092 DeepMRMD:1;iRNA_m5C:0.999535621664117 30093 chr10 118314711 118314711 1 + G T LUSC 118314708 + 118314688 118314728 41 AGGGTTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTG AGGGTTGGACCCAGCAGAACCTTTCTTTCAGGGCACACCTG < 41bp 1 0.106960151137159 1 0.142944604158401 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314708 chr10:118314711 nonsynonymous SNV 0.938 1 24 hm5C_associated_SNPs_29862 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30093 DeepMRMD:1;iRNA_m5C:0.999536712157815 30094 chr10 118314711 118314711 1 + G T LUSC 118314712 + 118314692 118314732 41 TTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTGAATT TTGGACCCAGCAGAACCTTTCTTTCAGGGCACACCTGAATT < 41bp 1 0.0582148044618673 1 0.0556910932064056 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314712 chr10:118314711 nonsynonymous SNV 0.938 1 20 hm5C_associated_SNPs_29863 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30094 DeepMRMD:1;iRNA_m5C:0.999536712157815 30095 chr10 118314711 118314711 1 + G T LUSC 118314721 + 118314701 118314741 41 GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATT GCAGAACCTTTCTTTCAGGGCACACCTGAATTAGTCCGATT < 41bp 1 0.245168429644023 1 0.0393166840076447 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314721 chr10:118314711 nonsynonymous SNV 0.938 1 11 hm5C_associated_SNPs_29864 0 0 0 0 1 unknown 1 0.500231643921091 1 0.999536712157817 hm5C_site_30095 DeepMRMD:1;iRNA_m5C:0.999536712157817 30096 chr10 118314711 118314711 1 + G T LUSC 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTTCTTTCAGGGCACACCTGAATTAGTCCGATTGG < 41bp 1 0.397500051734456 1 0.0520841777324677 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314711 nonsynonymous SNV 0.938 1 9 hm5C_associated_SNPs_29865 0 0 0 0 1 unknown 1 0.50023164401296 1 0.99953671197408 hm5C_site_30096 DeepMRMD:1;iRNA_m5C:0.99953671197408 30097 chr10 118314711 118314711 1 + G T LUSC 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTTCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC < 41bp 1 0.207347966055166 1 0.227236419916153 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314711 nonsynonymous SNV 0.938 1 7 hm5C_associated_SNPs_29866 0 0 0 0 1 unknown 1 0.500231643921094 1 0.999536712157813 hm5C_site_30097 DeepMRMD:1;iRNA_m5C:0.999536712157813 30098 chr10 118314711 118314711 1 + G T LUSC 118314726 + 118314706 118314746 41 ACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC ACCTTTCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC < 41bp 1 0.685386294327665 1 0.566438674926758 experiment 0.629227411344671 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314726 chr10:118314711 nonsynonymous SNV 0.938 1 6 hm5C_associated_SNPs_29867 0 0 0 0 1 unknown 1 0.500231643963117 0.867122650146484 0.999536712073766 hm5C_site_30098 DeepMRMD:0.867122650146484;iRNA_m5C:0.999536712073766 30099 chr4 39482348 39482348 1 + G A LUSC 39482364 + 39482344 39482384 41 TTGAGAAAACCGTCTGGTCACAGCCTGGTCGTCAGATTCTA TTGAAAAAACCGTCTGGTCACAGCCTGGTCGTCAGATTCTA < 41bp 1 0.365645643567479 1 0.0442051887512207 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482364 chr4:39482348 . . 0 5 hm5C_associated_SNPs_29868 0 0 0 1 0 unknown 1 0.500231820136144 1 0.999536359727712 hm5C_site_30099 DeepMRMD:1;iRNA_m5C:0.999536359727712 30100 chr17 74944109 74944109 1 + C A LUSC 74944107 + 74944087 74944127 41 GCACCGACACCTGCCTGGACCACGGGCTAATCTGTGAGCCC GCACCGACACCTGCCTGGACCAAGGGCTAATCTGTGAGCCC < 41bp 1 0.699105100479481 1 0.86231529712677 experiment 0.601789799041037 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74944107 chr17:74944109 nonsynonymous SNV 0.471 2 23 hm5C_associated_SNPs_29869 0 0 1 0 1 exosome 1 0.500231643894276 0.27536940574646 0.999536712211449 hm5C_site_30100 DeepMRMD:0.27536940574646;iRNA_m5C:0.999536712211449 30101 chr7 2473351 2473351 1 + C A LUSC 2473368 + 2473348 2473388 41 GGACCGGCAGCTCCGCTTCCCCCCGAGCTACCGGAACAGGA GGAACGGCAGCTCCGCTTCCCCCCGAGCTACCGGAACAGGA < 41bp 1 0.325716474173689 1 0.0812305212020874 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2473368 chr7:2473351 nonsynonymous SNV 0.024 1 4 hm5C_associated_SNPs_29870 0 0 1 0 0 nucleolus 1 0.500231643922238 1 0.999536712155524 hm5C_site_30101 DeepMRMD:1;iRNA_m5C:0.999536712155524 30102 chr11 123989037 123989037 1 + G C LUSC 123989020 + 123989000 123989040 41 CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATGTGC CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATCTGC < 41bp 1 0.164670948026229 1 0.196766078472137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VWA5A ENSG00000110002 CDS Human protein_coding chr11:123989020 chr11:123989037 nonsynonymous SNV 0.994 4 38 hm5C_associated_SNPs_29871 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30102 DeepMRMD:1;iRNA_m5C:0.999536712157815 30103 chr1 233514933 233514933 1 + C T LUSC 233514944 + 233514924 233514964 41 TGGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG TGGGTGCACTGTCCTTCTGGCATCGGTGGCTCTGGGACTGG < 41bp 1 0.293624008046817 1 0.0498450994491577 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233514944 chr1:233514933 synonymous SNV . 0 10 hm5C_associated_SNPs_29872 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30103 DeepMRMD:1;iRNA_m5C:0.999536712157815 30104 chr20 62368988 62368988 1 + C T LUSC 62368995 + 62368975 62369015 41 TGGGCGCTGTGCACAGCCTGCCGCAGGTAGGTCCCTCAGCC TGGGCGCTGTGCATAGCCTGCCGCAGGTAGGTCCCTCAGCC < 41bp 1 0.548950026652671 1 0.322125434875488 experiment 0.902099946694659 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LIME1 ENSG00000203896 CDS Human protein_coding chr20:62368995 chr20:62368988 nonsynonymous SNV 0.340 2 14 hm5C_associated_SNPs_29873 0 0 1 0 1 exosome 1 0.500231643921055 1 0.999536712157889 hm5C_site_30104 DeepMRMD:1;iRNA_m5C:0.999536712157889 30105 chr1 153742723 153742723 1 + C T LUSC 153742703 + 153742683 153742723 41 TAGACTGGGAGACCTTTGAGCAGTATTGTGCCTGGCAGCTC TAGACTGGGAGACCTTTGAGCAGTATTGTGCCTGGCAGCTT < 41bp 1 0.60873858370441 1 0.329465448856354 experiment 0.782522832591181 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153742703 chr1:153742723 synonymous SNV . 0 41 hm5C_associated_SNPs_29874 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30105 DeepMRMD:1;iRNA_m5C:0.999536712157815 30106 chr12 132325159 132325159 1 + C T LUSC 132325139 + 132325119 132325159 41 GTCCGGACGTTCCCACGGGACTCACCACTGGGGCACGACAC GTCCGGACGTTCCCACGGGACTCACCACTGGGGCACGACAT < 41bp 1 0.160604469402091 1 0.0534761548042297 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325139 chr12:132325159 nonsynonymous SNV 0.027 1 41 hm5C_associated_SNPs_29875 0 0 1 0 0 Cytosol 1 0.500231539537649 1 0.999536920924702 hm5C_site_30106 DeepMRMD:1;iRNA_m5C:0.999536920924702 30107 chr19 42814479 42814479 1 + G A LUSC 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCCCTAATCAAGTCCCAGAGCA < 41bp 1 0.254487678226166 1 0.105585157871246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814479 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_29876 0 0 0 4 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30107 DeepMRMD:1;iRNA_m5C:0.999536712157815 30108 chr3 170110086 170110086 1 + G A LUSC 170110073 + 170110053 170110093 41 GAACTGAGGCAGAGATTGGACCATGCTGAGGCCGATAGGCA GAACTGAGGCAGAGATTGGACCATGCTGAGGCCAATAGGCA < 41bp 1 0.175865304799244 1 0.111410796642303 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110073 chr3:170110086 nonsynonymous SNV 0.503 5 34 hm5C_associated_SNPs_29877 0 0 1 0 1 Nucleus 1 0.500212705405804 1 0.999574589188392 hm5C_site_30108 DeepMRMD:1;iRNA_m5C:0.999574589188392 30109 chr3 170110086 170110086 1 + G A LUSC 170110085 + 170110065 170110105 41 AGATTGGACCATGCTGAGGCCGATAGGCAAGAACTCCAAGA AGATTGGACCATGCTGAGGCCAATAGGCAAGAACTCCAAGA < 41bp 1 0.599381643334196 1 0.0823589563369751 experiment 0.801236713331609 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110085 chr3:170110086 nonsynonymous SNV 0.503 5 22 hm5C_associated_SNPs_29878 0 0 1 0 1 Nucleus 1 0.500231643921073 1 0.999536712157853 hm5C_site_30109 DeepMRMD:1;iRNA_m5C:0.999536712157853 30110 chr3 170110086 170110086 1 + G A LUSC 170110100 + 170110080 170110120 41 GAGGCCGATAGGCAAGAACTCCAAGATGAACTCAGACAGGA GAGGCCAATAGGCAAGAACTCCAAGATGAACTCAGACAGGA < 41bp 1 0.500140954010269 1 0.567641377449036 experiment 0.999718091979462 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170110100 chr3:170110086 nonsynonymous SNV 0.503 5 7 hm5C_associated_SNPs_29879 0 0 1 0 1 Nucleus 1 0.500231643921095 0.864717245101928 0.99953671215781 hm5C_site_30110 DeepMRMD:0.864717245101928;iRNA_m5C:0.99953671215781 30111 chr1 979373 979373 1 + G T LUSC 979380 + 979360 979400 41 GCAGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCGAGC GCAGACACAGATCTAGGAGGCCCGGGCAGGGCCGTGCGAGC < 41bp 1 0.38127897994518 1 0.48004487156868 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979380 chr1:979373 stopgain 0.590 1 14 hm5C_associated_SNPs_29880 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643914762 1 0.999536712170476 hm5C_site_30111 DeepMRMD:1;iRNA_m5C:0.999536712170476 30112 chr1 979373 979373 1 + G T LUSC 979381 + 979361 979401 41 CAGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCGAGCA CAGACACAGATCTAGGAGGCCCGGGCAGGGCCGTGCGAGCA < 41bp 1 0.373073721762758 1 0.25777193903923 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979381 chr1:979373 stopgain 0.590 1 13 hm5C_associated_SNPs_29881 0 0 1 0 0 Endoplasmic reticulum 1 0.500231531855729 1 0.999536936288542 hm5C_site_30112 DeepMRMD:1;iRNA_m5C:0.999536936288542 30113 chr1 979373 979373 1 + G T LUSC 979382 + 979362 979402 41 AGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCGAGCAG AGACACAGATCTAGGAGGCCCGGGCAGGGCCGTGCGAGCAG < 41bp 1 0.594411557267576 1 0.777095317840576 experiment 0.811176885464849 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979382 chr1:979373 stopgain 0.590 1 12 hm5C_associated_SNPs_29882 0 0 1 0 0 Endoplasmic reticulum 1 0.500231642550488 0.445809364318848 0.999536714899024 hm5C_site_30113 DeepMRMD:0.445809364318848;iRNA_m5C:0.999536714899024 30114 chr1 979373 979373 1 + G T LUSC 979391 + 979371 979411 41 TCGAGGAGGCCCGGGCAGGGCCGTGCGAGCAGGGTAGGCCG TCTAGGAGGCCCGGGCAGGGCCGTGCGAGCAGGGTAGGCCG < 41bp 1 0.31396079482592 1 0.465048879384995 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979391 chr1:979373 stopgain 0.590 1 3 hm5C_associated_SNPs_29883 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30114 DeepMRMD:1;iRNA_m5C:0.999536712157815 30115 chr1 979373 979373 1 + G T LUSC 979392 + 979372 979412 41 CGAGGAGGCCCGGGCAGGGCCGTGCGAGCAGGGTAGGCCGG CTAGGAGGCCCGGGCAGGGCCGTGCGAGCAGGGTAGGCCGG < 41bp 1 0.330625370571745 1 0.58686363697052 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979392 chr1:979373 stopgain 0.590 1 2 hm5C_associated_SNPs_29884 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.82627272605896 0.999536712157815 hm5C_site_30115 DeepMRMD:0.82627272605896;iRNA_m5C:0.999536712157815 30116 chrX 128703353 128703353 1 + G C LUSC 128703368 + 128703348 128703388 41 AGCCTGTTAGCGCCCTCTTCCATATTGGGGTAAACACTTGT AGCCTCTTAGCGCCCTCTTCCATATTGGGGTAAACACTTGT < 41bp 1 0.103401189121465 1 0.248976558446884 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128703368 chrX:128703353 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_29885 0 0 0 0 1 Cytosol 1 0.500231643920239 1 0.999536712159523 hm5C_site_30116 DeepMRMD:1;iRNA_m5C:0.999536712159523 30117 chr9 36204115 36204115 1 + G A LUSC 36204107 + 36204087 36204127 41 AGCAGAGTGGAAAGAAAAGGCAATAAAGGAGCTAGAAGAAT AGCAGAGTGGAAAGAAAAGGCAATAAAGAAGCTAGAAGAAT < 41bp 1 0.41568179035785 1 0.268869787454605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTA ENSG00000122705 CDS Human protein_coding chr9:36204107 chr9:36204115 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_29886 0 0 1 0 2 Ribosome 1 0.500231643921106 1 0.999536712157788 hm5C_site_30117 DeepMRMD:1;iRNA_m5C:0.999536712157788 30118 chr11 120776141 120776141 1 + T A LUSC 120776153 + 120776133 120776173 41 GGATGGCGTGTACGGCGTTCCCGAGGCCAACGGCACCTGGA GGATGGCGAGTACGGCGTTCCCGAGGCCAACGGCACCTGGA < 41bp 1 0.30027873305819 1 0.727773070335388 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120776153 chr11:120776141 nonsynonymous SNV 0.453 0 9 hm5C_associated_SNPs_29888 0 0 0 0 0 membrane 1 0.50023164391711 0.544453859329224 0.999536712165781 hm5C_site_30118 DeepMRMD:0.544453859329224;iRNA_m5C:0.999536712165781 30119 chr11 120776159 120776159 1 + C A LUSC 120776153 + 120776133 120776173 41 GGATGGCGTGTACGGCGTTCCCGAGGCCAACGGCACCTGGA GGATGGCGTGTACGGCGTTCCCGAGGACAACGGCACCTGGA < 41bp 1 0.345848114538918 1 0.820433139801025 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120776153 chr11:120776159 nonsynonymous SNV 0.997 1 27 hm5C_associated_SNPs_29889 0 0 0 0 0 membrane 1 0.500231669220224 0.35913372039795 0.999536661559552 hm5C_site_30119 DeepMRMD:0.35913372039795;iRNA_m5C:0.999536661559552 30120 chr1 145581255 145581255 1 + G T LUSC 145581253 + 145581233 145581273 41 TCCGGGTGTCACTCATGTGCCCGGTGGGTAAAAGGGGAGAA TCCGGGTGTCACTCATGTGCCCTGTGGGTAAAAGGGGAGAA < 41bp 1 0.0783392110161469 1 0.122816771268845 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIAS3 ENSG00000131788 CDS Human protein_coding chr1:145581253 chr1:145581255 synonymous SNV . 0 23 hm5C_associated_SNPs_29890 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30120 DeepMRMD:1;iRNA_m5C:0.999536712157815 30121 chr19 41040049 41040049 1 + C T LUSC 41040069 + 41040049 41040089 41 CGAGATCCGCCAGTGCTGGGCGGAGCTGGAGAGCACCACCC TGAGATCCGCCAGTGCTGGGCGGAGCTGGAGAGCACCACCC < 41bp 1 0.490555705645201 1 0.790152192115784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41040069 chr19:41040049 synonymous SNV . 0 1 hm5C_associated_SNPs_29891 0 0 0 0 1 cytosol 1 0.500231643921092 0.419695615768432 0.999536712157815 hm5C_site_30121 DeepMRMD:0.419695615768432;iRNA_m5C:0.999536712157815 30122 chr2 96686964 96686964 1 + G A LUSC 96686979 + 96686959 96686999 41 GACCTGATAGCCTGGGTGTCCCAGTGAGTGACAGGGGCTAT GACCTAATAGCCTGGGTGTCCCAGTGAGTGACAGGGGCTAT < 41bp 1 0.367845296749491 1 0.345578253269196 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAHD2CP ENSG00000231584 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96686979 chr2:96686964 . . 0 6 hm5C_associated_SNPs_29892 0 0 0 0 2 unknown 1 0.500231569924281 1 0.999536860151438 hm5C_site_30122 DeepMRMD:1;iRNA_m5C:0.999536860151438 30123 chr1 36026502 36026502 1 + G A LUSC 36026504 + 36026484 36026524 41 GCCCCTCTTTTTGCCCCCGACAACCGTGCCCCCTGAATGCT GCCCCTCTTTTTGCCCCCAACAACCGTGCCCCCTGAATGCT < 41bp 1 0.260043143174639 1 0.222751796245575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36026504 chr1:36026502 synonymous SNV . 0 19 hm5C_associated_SNPs_29893 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30123 DeepMRMD:1;iRNA_m5C:0.999536712157815 30124 chr1 36026502 36026502 1 + G A LUSC 36026508 + 36026488 36026528 41 CTCTTTTTGCCCCCGACAACCGTGCCCCCTGAATGCTACCG CTCTTTTTGCCCCCAACAACCGTGCCCCCTGAATGCTACCG < 41bp 1 0.193553149302699 1 0.500741422176361 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36026508 chr1:36026502 synonymous SNV . 0 15 hm5C_associated_SNPs_29894 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.998517155647278 0.999536712157815 hm5C_site_30124 DeepMRMD:0.998517155647278;iRNA_m5C:0.999536712157815 30125 chr22 40660695 40660695 1 + C G LUSC 40660713 + 40660693 40660733 41 CTCAACCCTTGGAGGTGCTGCTGCTTCAAATTATGCAAATT CTGAACCCTTGGAGGTGCTGCTGCTTCAAATTATGCAAATT < 41bp 1 0.0743175701768639 1 0.0606448948383331 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40660713 chr22:40660695 stopgain 1.000 1 3 hm5C_associated_SNPs_29895 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30125 DeepMRMD:1;iRNA_m5C:0.999536712157815 30126 chr19 56925413 56925413 1 + G A LUSC 56925395 + 56925375 56925415 41 ATGGGAATGGCTGAACCCTGCTCAGAGGAATTTGTACAGGA ATGGGAATGGCTGAACCCTGCTCAGAGGAATTTGTACAAGA < 41bp 1 0.642050731410667 1 0.0735331177711487 experiment 0.715898537178665 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925395 chr19:56925413 nonsynonymous SNV 0.048 0 39 hm5C_associated_SNPs_29896 0 0 0 0 2 chromatin 1 0.500210000887902 1 0.999579998224195 hm5C_site_30126 DeepMRMD:1;iRNA_m5C:0.999579998224195 30127 chr19 54711357 54711357 1 + G T LUSC 54711362 + 54711342 54711382 41 CGCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAG CGCTCTCCCTACGGGTGTGGCCGCCCGGGCCGCGTGAAGAG < 41bp 1 0.342223143814169 1 0.141463369131088 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711362 chr19:54711357 nonsynonymous SNV 0.121 2 16 hm5C_associated_SNPs_29897 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_30127 DeepMRMD:1;iRNA_m5C:0.999536712157815 30128 chr19 54711357 54711357 1 + G T LUSC 54711363 + 54711343 54711383 41 GCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAGG GCTCTCCCTACGGGTGTGGCCGCCCGGGCCGCGTGAAGAGG < 41bp 1 0.575569392982085 1 0.43853434920311 experiment 0.84886121403583 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711363 chr19:54711357 nonsynonymous SNV 0.121 2 15 hm5C_associated_SNPs_29898 0 0 1 0 1 Ribosome 1 0.500231643921111 1 0.999536712157778 hm5C_site_30128 DeepMRMD:1;iRNA_m5C:0.999536712157778 30129 chr6 35436793 35436793 1 + G T LUSC 35436813 + 35436793 35436833 41 GGGCACCGTCAGGTTGGCACCGTTCTGATCCCACCCAGCCC TGGCACCGTCAGGTTGGCACCGTTCTGATCCCACCCAGCCC < 41bp 1 0.154831041454596 1 0.118504345417023 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35436813 chr6:35436793 synonymous SNV . 0 1 hm5C_associated_SNPs_29899 0 0 1 0 2 Cytosol 1 0.500248271574848 1 0.999503456850303 hm5C_site_30129 DeepMRMD:1;iRNA_m5C:0.999503456850303 30130 chr4 184129113 184129113 1 + G T LUSC 184129110 + 184129090 184129130 41 CACCTAATGTTTTCAGAAACCACGCAGATAGAAGATCCAAG CACCTAATGTTTTCAGAAACCACTCAGATAGAAGATCCAAG < 41bp 1 0.0661250894115425 1 0.127796471118927 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184129110 chr4:184129113 synonymous SNV . 0 24 hm5C_associated_SNPs_29900 0 0 1 0 1 Cytosol 1 0.50023164395045 1 0.999536712099101 hm5C_site_30130 DeepMRMD:1;iRNA_m5C:0.999536712099101 30131 chr4 184129113 184129113 1 + G T LUSC 184129126 + 184129106 184129146 41 AAACCACGCAGATAGAAGATCCAAGAAAACAATGGAGGGGG AAACCACTCAGATAGAAGATCCAAGAAAACAATGGAGGGGG < 41bp 1 0.110119844830344 1 0.371095776557922 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184129126 chr4:184129113 synonymous SNV . 0 8 hm5C_associated_SNPs_29901 0 0 1 0 1 Cytosol 1 0.500231643921276 1 0.999536712157449 hm5C_site_30131 DeepMRMD:1;iRNA_m5C:0.999536712157449 30132 chr5 92923917 92923917 1 + G T LUSC 92923934 + 92923914 92923954 41 TACGCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCC TACTCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCC < 41bp 1 0.108200930307487 1 0.0628942847251892 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92923934 chr5:92923917 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_29902 0 0 1 0 0 nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_30132 DeepMRMD:1;iRNA_m5C:0.999536712157813 30133 chr16 29989123 29989123 1 + G A LUSC 29989108 + 29989088 29989128 41 GCCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGA GCCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTAAAGGA < 41bp 1 0.54073759472661 1 0.590691208839417 experiment 0.918524810546779 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989108 chr16:29989123 synonymous SNV . 0 36 hm5C_associated_SNPs_29903 0 0 1 0 0 Nucleus 1 0.500231643921092 0.818617582321166 0.999536712157815 hm5C_site_30133 DeepMRMD:0.818617582321166;iRNA_m5C:0.999536712157815 30134 chr16 29989123 29989123 1 + G A LUSC 29989109 + 29989089 29989129 41 CCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGAC CCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTAAAGGAC < 41bp 1 0.447455612933627 1 0.593907475471497 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989109 chr16:29989123 synonymous SNV . 0 35 hm5C_associated_SNPs_29904 0 0 1 0 0 Nucleus 1 0.500231639711184 0.812185049057006 0.999536720577632 hm5C_site_30134 DeepMRMD:0.812185049057006;iRNA_m5C:0.999536720577632 30135 chrX 73046593 73046593 1 + A T LUSC 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGAAAGAGGACCCAAGCGAAAAAGGTATCTCA < 41bp 1 0.0838294849639049 1 0.187224388122559 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046593 . . 0 13 hm5C_associated_SNPs_29905 0 0 1 3 0 unknown 1 0.500231643921083 1 0.999536712157834 hm5C_site_30135 DeepMRMD:1;iRNA_m5C:0.999536712157834 30136 chrX 73046593 73046593 1 + A T LUSC 73046606 - 73046586 73046626 41 GAAGGCCCCTGTCACAAAGCCTACCTAGATGGATAGAGGAC GAAGGCCCCTGTCACAAAGCCTACCTAGATGGAAAGAGGAC < 41bp 1 0.0921494328342301 1 0.0769659578800201 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046606 chrX:73046593 . . 0 34 hm5C_associated_SNPs_29906 0 0 1 3 0 unknown 1 0.500231643922293 1 0.999536712155415 hm5C_site_30136 DeepMRMD:1;iRNA_m5C:0.999536712155415 30137 chrX 73046593 73046593 1 + A T LUSC 73046612 - 73046592 73046632 41 AGGATGGAAGGCCCCTGTCACAAAGCCTACCTAGATGGATA AGGATGGAAGGCCCCTGTCACAAAGCCTACCTAGATGGAAA < 41bp 1 0.257754968157019 1 0.425182580947876 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046612 chrX:73046593 . . 0 40 hm5C_associated_SNPs_29907 0 0 1 3 0 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_30137 DeepMRMD:1;iRNA_m5C:0.999536712157818 30138 chr14 94512168 94512168 1 + C G LUSC 94512166 + 94512146 94512186 41 TACGTGGACGAGATGGATACCGCCCTGAACCACCACGTGTT TACGTGGACGAGATGGATACCGGCCTGAACCACCACGTGTT < 41bp 1 0.564295344392694 1 0.447904825210571 experiment 0.871409311214612 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUB2 ENSG00000089723 CDS Human protein_coding chr14:94512166 chr14:94512168 nonsynonymous SNV 0.414 1 23 hm5C_associated_SNPs_29908 0 0 0 0 0 exosome 1 0.500231643921086 1 0.999536712157828 hm5C_site_30138 DeepMRMD:1;iRNA_m5C:0.999536712157828 30139 chr10 73122251 73122251 1 + T C LUSC 73122270 + 73122250 73122290 41 CTAAGATTGTGCCCAGGGAGCTGGCTGAGGCCACGGGAGTG CCAAGATTGTGCCCAGGGAGCTGGCTGAGGCCACGGGAGTG < 41bp 1 0.696887036187838 1 0.552284419536591 experiment 0.606225927624325 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73122270 chr10:73122251 synonymous SNV . 0 2 hm5C_associated_SNPs_29909 0 0 0 0 0 chromatin 1 0.500231643921092 0.895431160926818 0.999536712157815 hm5C_site_30139 DeepMRMD:0.895431160926818;iRNA_m5C:0.999536712157815 30140 chr8 48874091 48874091 1 + C A LUSC 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGACAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA < 41bp 1 0.17647431861161 1 0.0679217278957367 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874091 nonsynonymous SNV 0.141 0 8 hm5C_associated_SNPs_29910 0 0 1 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30140 DeepMRMD:1;iRNA_m5C:0.999536712157815 30141 chr3 12422963 12422963 1 + T C LUSC 12422970 + 12422950 12422990 41 CTGGATTTCACTATGGAGTTCATGCTTGTGAAGGATGCAAG CTGGATTTCACTACGGAGTTCATGCTTGTGAAGGATGCAAG < 41bp 1 0.109508023842278 1 0.0534103214740753 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPARG ENSG00000132170 CDS Human protein_coding chr3:12422970 chr3:12422963 synonymous SNV . 0 14 hm5C_associated_SNPs_29911 0 0 1 0 1 Cytosol 1 0.500231649782658 1 0.999536700434684 hm5C_site_30141 DeepMRMD:1;iRNA_m5C:0.999536700434684 30142 chr17 77757723 77757723 1 + C T LUSC 77757717 + 77757697 77757737 41 CCAAACCCGAGCTGAAGGATCCCATCCGGAAGAAGCGGGGA CCAAACCCGAGCTGAAGGATCCCATCTGGAAGAAGCGGGGA < 41bp 1 0.165838050769813 1 0.104898750782013 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77757717 chr17:77757723 nonsynonymous SNV 0.713 3 27 hm5C_associated_SNPs_29912 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30142 DeepMRMD:1;iRNA_m5C:0.999536712157815 30143 chr8 121259927 121259927 1 + C A LUSC 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCAATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.105152161410939 1 0.163827985525131 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259927 nonsynonymous SNV 0.058 4 18 hm5C_associated_SNPs_29913 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30143 DeepMRMD:1;iRNA_m5C:0.999536712157815 30144 chr8 121259927 121259927 1 + C A LUSC 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCAATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.363247325791575 1 0.0855082273483276 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259927 nonsynonymous SNV 0.058 4 14 hm5C_associated_SNPs_29914 0 0 0 0 2 Ribosome 1 0.500231643921955 1 0.99953671215609 hm5C_site_30144 DeepMRMD:1;iRNA_m5C:0.99953671215609 30145 chr4 144460047 144460047 1 + T A LUSC 144460033 + 144460013 144460053 41 TGGCATCAATCTTGCGACTGCTGATGTAGTAATTTTGTATG TGGCATCAATCTTGCGACTGCTGATGTAGTAATTATGTATG < 41bp 1 0.245763934501489 1 0.297051608562469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144460033 chr4:144460047 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_29915 0 0 1 0 1 Nucleus 1 0.500245667243356 1 0.999508665513288 hm5C_site_30145 DeepMRMD:1;iRNA_m5C:0.999508665513288 30146 chr12 56335336 56335336 1 + G C LUSC 56335343 + 56335323 56335363 41 ACCCTCGACAGGTGTTCAACCTCCTAAAGGATGGTCCTGAG ACCCTCGACAGGTCTTCAACCTCCTAAAGGATGGTCCTGAG < 41bp 1 0.649682631272069 1 0.672214806079865 experiment 0.700634737455862 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DGKA ENSG00000065357 CDS Human protein_coding chr12:56335343 chr12:56335336 synonymous SNV . 0 14 hm5C_associated_SNPs_29916 0 0 0 0 0 Cytosol 1 0.500231643926317 0.65557038784027 0.999536712147365 hm5C_site_30146 DeepMRMD:0.65557038784027;iRNA_m5C:0.999536712147365 30147 chr16 8735029 8735029 1 + G A LUSC 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGACAACCTCTGCACAGGTGTGTGTTTC < 41bp 1 0.296019563947509 1 0.460259109735489 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735029 nonsynonymous SNV 0.974 0 18 hm5C_associated_SNPs_29917 0 0 1 0 2 Cytosol 1 0.50022746460649 1 0.999545070787019 hm5C_site_30147 DeepMRMD:1;iRNA_m5C:0.999545070787019 30148 chr6 157527978 157527978 1 + T G LUSC 157527969 + 157527949 157527989 41 GCAAACCCTGGGCCCCAGACCGAAAGCAGTAAGTTTCCCTT GCAAACCCTGGGCCCCAGACCGAAAGCAGGAAGTTTCCCTT < 41bp 1 0.362561117815005 1 0.807968735694885 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARID1B ENSG00000049618 CDS Human protein_coding chr6:157527969 chr6:157527978 nonsynonymous SNV 0.997 0 30 hm5C_associated_SNPs_29918 0 0 0 0 0 Ribosome 1 0.500231643921092 0.38406252861023 0.999536712157815 hm5C_site_30148 DeepMRMD:0.38406252861023;iRNA_m5C:0.999536712157815 30149 chr10 70525822 70525822 1 + G C LUSC 70525803 + 70525783 70525823 41 TTGAGTGTCCTATTGGACTACAGATTAGAGGATAATAAAGA TTGAGTGTCCTATTGGACTACAGATTAGAGGATAATAAACA < 41bp 1 0.230450859431968 1 0.31879734992981 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70525803 chr10:70525822 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_29920 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30149 DeepMRMD:1;iRNA_m5C:0.999536712157815 30150 chr5 176001165 176001165 1 + A G LUSC 176001161 + 176001141 176001181 41 TCTGCAGGCATGGTCGTGTACTCCATAGAGAAGGTGAGTGT TCTGCAGGCATGGTCGTGTACTCCGTAGAGAAGGTGAGTGT < 41bp 1 0.688794718130673 1 0.345861375331879 experiment 0.622410563738654 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176001161 chr5:176001165 nonsynonymous SNV 0.806 1 25 hm5C_associated_SNPs_29921 0 0 1 0 2 Exosome 1 0.50023164392087 1 0.999536712158259 hm5C_site_30150 DeepMRMD:1;iRNA_m5C:0.999536712158259 30151 chr4 53579444 53579444 1 + T C LUSC 53579434 + 53579414 53579454 41 CTGTGCCCTTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAA CTGTGCCCTTTTAAGGTTGACCCAGTGCTTCAAGAGGCTAA < 41bp 1 0.119632056990877 1 0.0876375734806061 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579434 chr4:53579444 . . 0 31 hm5C_associated_SNPs_29922 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30151 DeepMRMD:1;iRNA_m5C:0.999536712157815 30152 chr4 53579444 53579444 1 + T C LUSC 53579435 + 53579415 53579455 41 TGTGCCCTTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAAC TGTGCCCTTTTAAGGTTGACCCAGTGCTTCAAGAGGCTAAC < 41bp 1 0.149338145315398 1 0.322497606277466 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579435 chr4:53579444 . . 0 30 hm5C_associated_SNPs_29923 0 0 1 0 0 unknown 1 0.500235951634923 1 0.999528096730153 hm5C_site_30152 DeepMRMD:1;iRNA_m5C:0.999528096730153 30153 chr4 53579444 53579444 1 + T C LUSC 53579436 + 53579416 53579456 41 GTGCCCTTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAACA GTGCCCTTTTAAGGTTGACCCAGTGCTTCAAGAGGCTAACA < 41bp 1 0.285028839417983 1 0.494164198637009 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579436 chr4:53579444 . . 0 29 hm5C_associated_SNPs_29924 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30153 DeepMRMD:1;iRNA_m5C:0.999536712157815 30154 chr4 53579444 53579444 1 + T C LUSC 53579441 + 53579421 53579461 41 CTTTTAAGGTTGACCCAGTGCTTTAAGAGGCTAACACAGAA CTTTTAAGGTTGACCCAGTGCTTCAAGAGGCTAACACAGAA < 41bp 1 0.425759230509418 1 0.358133673667908 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579441 chr4:53579444 . . 0 24 hm5C_associated_SNPs_29925 0 0 1 0 0 unknown 1 0.500231643934399 1 0.999536712131203 hm5C_site_30154 DeepMRMD:1;iRNA_m5C:0.999536712131203 30155 chr4 53579444 53579444 1 + T C LUSC 53579451 + 53579431 53579471 41 TGACCCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTA TGACCCAGTGCTTCAAGAGGCTAACACAGAAGGGTAAAGTA < 41bp 1 0.140297456896568 1 0.183743447065353 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579451 chr4:53579444 . . 0 14 hm5C_associated_SNPs_29926 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30155 DeepMRMD:1;iRNA_m5C:0.999536712157815 30156 chr4 53579444 53579444 1 + T C LUSC 53579455 + 53579435 53579475 41 CCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTC CCAGTGCTTCAAGAGGCTAACACAGAAGGGTAAAGTAAGTC < 41bp 1 0.333558995609628 1 0.35251384973526 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579455 chr4:53579444 . . 0 10 hm5C_associated_SNPs_29927 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30156 DeepMRMD:1;iRNA_m5C:0.999536712157815 30157 chr16 71956497 71956497 1 + G C LUSC 71956504 + 71956484 71956524 41 AGTTGGTGGACCTGATGGAACGGTGCCAATGCCCATGCCCA AGTTGGTGGACCTCATGGAACGGTGCCAATGCCCATGCCCA < 41bp 1 0.646629558301732 1 0.306204438209534 experiment 0.706740883396535 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IST1 ENSG00000182149 CDS Human protein_coding chr16:71956504 chr16:71956497 nonsynonymous SNV 0.997 2 14 hm5C_associated_SNPs_29929 0 0 1 2 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30157 DeepMRMD:1;iRNA_m5C:0.999536712157815 30158 chr1 228495998 228495998 1 + G T LUSC 228496008 + 228495988 228496028 41 CACACCCTGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGG CACACCCTGCTGCTGAAGGGCGTGACGCCCGAGGACGCTGG < 41bp 1 0.101494921957464 1 0.580971419811249 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496008 chr1:228495998 nonsynonymous SNV 0.002 1 11 hm5C_associated_SNPs_29930 0 0 0 0 1 Ribosome 1 0.500231664556153 0.838057160377502 0.999536670887695 hm5C_site_30158 DeepMRMD:0.838057160377502;iRNA_m5C:0.999536670887695 30159 chr1 228495998 228495998 1 + G T LUSC 228496015 + 228495995 228496035 41 TGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC TGCTGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC < 41bp 1 0.166714699592212 1 0.658774256706238 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496015 chr1:228495998 nonsynonymous SNV 0.002 1 4 hm5C_associated_SNPs_29931 0 0 0 0 1 Ribosome 1 0.500231642922538 0.682451486587524 0.999536714154925 hm5C_site_30159 DeepMRMD:0.682451486587524;iRNA_m5C:0.999536714154925 30160 chr1 228495998 228495998 1 + G T LUSC 228496016 + 228495996 228496036 41 GCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT GCTGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT < 41bp 1 0.0806517148395592 1 0.508933365345001 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496016 chr1:228495998 nonsynonymous SNV 0.002 1 3 hm5C_associated_SNPs_29932 0 0 0 0 1 Ribosome 1 0.50023164392109 0.982133269309998 0.99953671215782 hm5C_site_30160 DeepMRMD:0.982133269309998;iRNA_m5C:0.99953671215782 30161 chr1 228495998 228495998 1 + G T LUSC 228496017 + 228495997 228496037 41 CGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC CTGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC < 41bp 1 0.220708285955288 1 0.891510546207428 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496017 chr1:228495998 nonsynonymous SNV 0.002 1 2 hm5C_associated_SNPs_29933 0 0 0 0 1 Ribosome 1 0.500231643891696 0.216978907585144 0.999536712216608 hm5C_site_30161 DeepMRMD:0.216978907585144;iRNA_m5C:0.999536712216608 30162 chr15 22962537 22962537 1 + A T LUSC 22962534 + 22962514 22962554 41 GCTACGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC GCTACGAGACGCTGCTGAAGCAGTGGCATGTGCAGGTGAGC < 41bp 1 0.550700649847753 1 0.698631525039673 experiment 0.898598700304495 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22962534 chr15:22962537 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_29934 0 0 1 0 2 Cytosol 1 0.500231571951325 0.602736949920654 0.999536856097349 hm5C_site_30162 DeepMRMD:0.602736949920654;iRNA_m5C:0.999536856097349 30163 chr15 85326210 85326210 1 + C T LUSC 85326199 + 85326179 85326219 41 ACACAATGGATTCCGGGGCTCAGATCTGCCTCCAGATCCCC ACACAATGGATTCCGGGGCTCAGATCTGCCTTCAGATCCCC < 41bp 1 0.367837858193798 1 0.0912433266639709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF592 ENSG00000166716 CDS Human protein_coding chr15:85326199 chr15:85326210 nonsynonymous SNV 0.960 0 32 hm5C_associated_SNPs_29935 0 0 1 0 0 Cytosol 1 0.50023164392658 1 0.999536712146841 hm5C_site_30163 DeepMRMD:1;iRNA_m5C:0.999536712146841 30164 chr6 99283482 99283482 1 + C T LUSC 99283470 + 99283450 99283490 41 ACCCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGT ACCCACACCAGCAGCCGCCGCCCCCGCCGCCCTCGCAGGGT < 41bp 1 0.268693186906384 1 0.242246866226196 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283470 chr6:99283482 nonsynonymous SNV 0.989 2 33 hm5C_associated_SNPs_29936 0 0 0 0 0 exosome 1 0.50023164542362 1 0.99953670915276 hm5C_site_30164 DeepMRMD:1;iRNA_m5C:0.99953670915276 30165 chr6 99283482 99283482 1 + C T LUSC 99283471 + 99283451 99283491 41 CCCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTC CCCACACCAGCAGCCGCCGCCCCCGCCGCCCTCGCAGGGTC < 41bp 1 0.50191683407562 1 0.308970779180527 experiment 0.99616633184876 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283471 chr6:99283482 nonsynonymous SNV 0.989 2 32 hm5C_associated_SNPs_29937 0 0 0 0 0 exosome 1 0.500231620066133 1 0.999536759867734 hm5C_site_30165 DeepMRMD:1;iRNA_m5C:0.999536759867734 30166 chr6 99283482 99283482 1 + C T LUSC 99283472 + 99283452 99283492 41 CCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCC CCACACCAGCAGCCGCCGCCCCCGCCGCCCTCGCAGGGTCC < 41bp 1 0.430598204967949 1 0.409768104553223 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283472 chr6:99283482 nonsynonymous SNV 0.989 2 31 hm5C_associated_SNPs_29938 0 0 0 0 0 exosome 1 0.50023164392177 1 0.99953671215646 hm5C_site_30166 DeepMRMD:1;iRNA_m5C:0.99953671215646 30167 chr6 99283482 99283482 1 + C T LUSC 99283473 + 99283453 99283493 41 CACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCG CACACCAGCAGCCGCCGCCCCCGCCGCCCTCGCAGGGTCCG < 41bp 1 0.356949453908197 1 0.133976697921753 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283473 chr6:99283482 nonsynonymous SNV 0.989 2 30 hm5C_associated_SNPs_29939 0 0 0 0 0 exosome 1 0.50023164375511 1 0.999536712489779 hm5C_site_30167 DeepMRMD:1;iRNA_m5C:0.999536712489779 30168 chr6 99283482 99283482 1 + C T LUSC 99283476 + 99283456 99283496 41 ACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCGCCT ACCAGCAGCCGCCGCCCCCGCCGCCCTCGCAGGGTCCGCCT < 41bp 1 0.586967605563722 1 0.662571489810944 experiment 0.826064788872556 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283476 chr6:99283482 nonsynonymous SNV 0.989 2 27 hm5C_associated_SNPs_29940 0 0 0 0 0 exosome 1 0.500231639415198 0.674857020378112 0.999536721169603 hm5C_site_30168 DeepMRMD:0.674857020378112;iRNA_m5C:0.999536721169603 30169 chr6 99283482 99283482 1 + C T LUSC 99283477 + 99283457 99283497 41 CCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCGCCTG CCAGCAGCCGCCGCCCCCGCCGCCCTCGCAGGGTCCGCCTG < 41bp 1 0.678640944854767 1 0.429721534252167 experiment 0.642718110290466 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283477 chr6:99283482 nonsynonymous SNV 0.989 2 26 hm5C_associated_SNPs_29941 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30169 DeepMRMD:1;iRNA_m5C:0.999536712157815 30170 chr3 9784741 9784741 1 + C G LUSC 9784735 + 9784715 9784755 41 GATGATTTTGAGGAGGACTTCAACCTCATCGTCAGCAACTG GATGATTTTGAGGAGGACTTCAACCTGATCGTCAGCAACTG < 41bp 1 0.319808257731258 1 0.308714091777802 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9784735 chr3:9784741 synonymous SNV . 0 27 hm5C_associated_SNPs_29942 0 0 1 0 0 Nucleus 1 0.500231643920995 1 0.999536712158011 hm5C_site_30170 DeepMRMD:1;iRNA_m5C:0.999536712158011 30171 chr3 58112437 58112437 1 + C T LUSC 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCCTTTTGCACCGGGGGATTACGATGTTA < 41bp 1 0.442523537051282 1 0.0712225139141083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112437 synonymous SNV . 0 19 hm5C_associated_SNPs_29943 0 0 1 0 1 Cytosol 1 0.500231643921261 1 0.999536712157478 hm5C_site_30171 DeepMRMD:1;iRNA_m5C:0.999536712157478 30172 chr3 58112437 58112437 1 + C T LUSC 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCCTTTTGCACCGGGGGATTACGATGTTAAT < 41bp 1 0.233636701249553 1 0.306386470794678 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112437 synonymous SNV . 0 17 hm5C_associated_SNPs_29944 0 0 1 0 1 Cytosol 1 0.500231643926236 1 0.999536712147528 hm5C_site_30172 DeepMRMD:1;iRNA_m5C:0.999536712147528 30173 chr3 58112437 58112437 1 + C T LUSC 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCCTTTTGCACCGGGGGATTACGATGTTAATA < 41bp 1 0.462730466652556 1 0.869012236595154 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112437 synonymous SNV . 0 16 hm5C_associated_SNPs_29945 0 0 1 0 1 Cytosol 1 0.500231643921093 0.261975526809692 0.999536712157814 hm5C_site_30173 DeepMRMD:0.261975526809692;iRNA_m5C:0.999536712157814 30174 chr6 43143550 43143550 1 + C G LUSC 43143562 + 43143542 43143582 41 CGGCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGT CGGCCCCTGCTTTCCCATCACCAACTACCTGGCACCAGTGT < 41bp 1 0.0508617824204174 1 0.13621324300766 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SRF ENSG00000112658 CDS Human protein_coding chr6:43143562 chr6:43143550 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_29946 0 0 1 0 0 Ribosome 1 0.500231660390538 1 0.999536679218924 hm5C_site_30174 DeepMRMD:1;iRNA_m5C:0.999536679218924 30175 chr6 43143550 43143550 1 + C G LUSC 43143563 + 43143543 43143583 41 GGCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGTC GGCCCCTGCTTTCCCATCACCAACTACCTGGCACCAGTGTC < 41bp 1 0.179495948848282 1 0.0477953553199768 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRF ENSG00000112658 CDS Human protein_coding chr6:43143563 chr6:43143550 nonsynonymous SNV 0.999 4 8 hm5C_associated_SNPs_29947 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30175 DeepMRMD:1;iRNA_m5C:0.999536712157815 30176 chr6 43143550 43143550 1 + C G LUSC 43143566 + 43143546 43143586 41 CCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGTCTGC CCCTGCTTTCCCATCACCAACTACCTGGCACCAGTGTCTGC < 41bp 1 0.210619095466751 1 0.0435287654399872 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SRF ENSG00000112658 CDS Human protein_coding chr6:43143566 chr6:43143550 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_29948 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_30176 DeepMRMD:1;iRNA_m5C:0.999536712157814 30177 chr19 36370332 36370332 1 + G C LUSC 36370340 + 36370320 36370360 41 CGCTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC CGCTTCCTGGAGCAACGACCCTGACCCGGCCCCCTTCACCC < 41bp 1 0.38706149005108 1 0.182875156402588 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370340 chr19:36370332 nonsynonymous SNV 0.998 1 13 hm5C_associated_SNPs_29949 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157817 hm5C_site_30177 DeepMRMD:1;iRNA_m5C:0.999536712157817 30178 chr12 109604776 109604776 1 + G T LUSC 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCACACGCTTTGTGGGGGATCGGGTCATCGAGAAGGTACAG < 41bp 1 0.470607515787964 1 0.689505398273468 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604776 nonsynonymous SNV 0.942 3 13 hm5C_associated_SNPs_29951 0 0 1 0 1 Nucleus 1 0.500231645233876 0.620989203453064 0.999536709532248 hm5C_site_30178 DeepMRMD:0.620989203453064;iRNA_m5C:0.999536709532248 30179 chr2 171818196 171818196 1 + C T LUSC 171818210 + 171818190 171818230 41 TTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC TTATTGTCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC < 41bp 1 0.209315311069197 1 0.0920523405075073 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818210 chr2:171818196 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_29953 0 0 1 0 2 Ribosome 1 0.500231710303459 1 0.999536579393081 hm5C_site_30179 DeepMRMD:1;iRNA_m5C:0.999536579393081 30180 chr6 7231550 7231550 1 + C T LUSC 7231530 + 7231510 7231550 41 GAAGAGCTGCCCCCGCTGGCCTCCATTGCCCAGATCATCTC GAAGAGCTGCCCCCGCTGGCCTCCATTGCCCAGATCATCTT < 41bp 1 0.607493058025927 1 0.970149159431458 experiment 0.785013883948146 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RREB1 ENSG00000124782 CDS Human protein_coding chr6:7231530 chr6:7231550 nonsynonymous SNV 0.953 4 41 hm5C_associated_SNPs_29954 0 0 1 0 0 Nucleus 1 0.500231643953782 0.0597016811370841 0.999536712092435 hm5C_site_30180 DeepMRMD:0.0597016811370841;iRNA_m5C:0.999536712092435 30181 chr12 57919821 57919821 1 + C T LUSC 57919802 + 57919782 57919822 41 GAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCA GAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTTA < 41bp 1 0.0255829689978964 1 0.00925737619400024 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919802 chr12:57919821 nonsynonymous SNV 0.893 1 40 hm5C_associated_SNPs_29956 0 0 1 0 0 chromatin 1 0.500231643921567 1 0.999536712156867 hm5C_site_30181 DeepMRMD:1;iRNA_m5C:0.999536712156867 30182 chr12 57919821 57919821 1 + C T LUSC 57919803 + 57919783 57919823 41 AAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCAT AAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTTAT < 41bp 1 0.118491396857241 1 0.0270979702472687 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919803 chr12:57919821 nonsynonymous SNV 0.893 1 39 hm5C_associated_SNPs_29957 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30182 DeepMRMD:1;iRNA_m5C:0.999536712157815 30183 chr12 57919821 57919821 1 + C T LUSC 57919804 + 57919784 57919824 41 AGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATC AGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTTATC < 41bp 1 0.446665236579607 1 0.0761764049530029 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919804 chr12:57919821 nonsynonymous SNV 0.893 1 38 hm5C_associated_SNPs_29958 0 0 1 0 0 chromatin 1 0.500231643921067 1 0.999536712157866 hm5C_site_30183 DeepMRMD:1;iRNA_m5C:0.999536712157866 30184 chr12 57919821 57919821 1 + C T LUSC 57919806 + 57919786 57919826 41 GCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATCAC GCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTTATCAC < 41bp 1 0.595128567479239 1 0.56067281961441 experiment 0.809742865041521 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919806 chr12:57919821 nonsynonymous SNV 0.893 1 36 hm5C_associated_SNPs_29959 0 0 1 0 0 chromatin 1 0.500231643322377 0.87865436077118 0.999536713355246 hm5C_site_30184 DeepMRMD:0.87865436077118;iRNA_m5C:0.999536713355246 30185 chr12 57919821 57919821 1 + C T LUSC 57919809 + 57919789 57919829 41 CCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTC CCGTGCCCAGGCACCCTCAGCTTCCCACTCCTTATCACTTC < 41bp 1 0.0910234021582488 1 0.156584233045578 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919809 chr12:57919821 nonsynonymous SNV 0.893 1 33 hm5C_associated_SNPs_29960 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30185 DeepMRMD:1;iRNA_m5C:0.999536712157815 30186 chr12 57919821 57919821 1 + C T LUSC 57919812 + 57919792 57919832 41 TGCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTC TGCCCAGGCACCCTCAGCTTCCCACTCCTTATCACTTCGTC < 41bp 1 0.0581463345339433 1 0.0372719168663025 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919812 chr12:57919821 nonsynonymous SNV 0.893 1 30 hm5C_associated_SNPs_29961 0 0 1 0 0 chromatin 1 0.500231636214124 1 0.999536727571752 hm5C_site_30186 DeepMRMD:1;iRNA_m5C:0.999536727571752 30187 chr12 57919821 57919821 1 + C T LUSC 57919813 + 57919793 57919833 41 GCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCC GCCCAGGCACCCTCAGCTTCCCACTCCTTATCACTTCGTCC < 41bp 1 0.082026329952696 1 0.104518473148346 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919813 chr12:57919821 nonsynonymous SNV 0.893 1 29 hm5C_associated_SNPs_29962 0 0 1 0 0 chromatin 1 0.500231643920451 1 0.999536712159097 hm5C_site_30187 DeepMRMD:1;iRNA_m5C:0.999536712159097 30188 chr12 57919821 57919821 1 + C T LUSC 57919814 + 57919794 57919834 41 CCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCCC CCCAGGCACCCTCAGCTTCCCACTCCTTATCACTTCGTCCC < 41bp 1 0.149255330589482 1 0.0393635034561157 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919814 chr12:57919821 nonsynonymous SNV 0.893 1 28 hm5C_associated_SNPs_29963 0 0 1 0 0 chromatin 1 0.500231643921006 1 0.999536712157987 hm5C_site_30188 DeepMRMD:1;iRNA_m5C:0.999536712157987 30189 chr12 57919821 57919821 1 + C T LUSC 57919816 + 57919796 57919836 41 CAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCCCTC CAGGCACCCTCAGCTTCCCACTCCTTATCACTTCGTCCCTC < 41bp 1 0.366829222651061 1 0.347386986017227 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919816 chr12:57919821 nonsynonymous SNV 0.893 1 26 hm5C_associated_SNPs_29964 0 0 1 0 0 chromatin 1 0.500231643921275 1 0.99953671215745 hm5C_site_30189 DeepMRMD:1;iRNA_m5C:0.99953671215745 30190 chr10 129231606 129231606 1 + G A LUSC 129231605 + 129231585 129231625 41 GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCC GTCCATGGTGCGGTCCTTCACAATGCCTTCCTCATCCCGCC < 41bp 1 0.525072633107636 1 0.354468584060669 experiment 0.949854733784728 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129231605 chr10:129231606 synonymous SNV . 0 22 hm5C_associated_SNPs_29965 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30190 DeepMRMD:1;iRNA_m5C:0.999536712157815 30191 chr12 14650692 14650692 1 + G A LUSC 14650689 + 14650669 14650709 41 TCTCTGCCTCAGAAGCCACACTTGAAGTTAGCACGCGTTCA TCTCTGCCTCAGAAGCCACACTTAAAGTTAGCACGCGTTCA < 41bp 1 0.466334057211973 1 0.285243362188339 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14650689 chr12:14650692 synonymous SNV . 0 24 hm5C_associated_SNPs_29966 0 0 1 0 0 Cytosol 1 0.500231643953226 1 0.999536712093547 hm5C_site_30191 DeepMRMD:1;iRNA_m5C:0.999536712093547 30192 chr14 102792497 102792497 1 + C T LUSC 102792493 + 102792473 102792513 41 GCCCTCAGCTGCTCAGGGTACAGCCGCTTGTGAGAACCGAG GCCCTCAGCTGCTCAGGGTACAGCTGCTTGTGAGAACCGAG < 41bp 1 0.43210486536754 1 0.20396813750267 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102792493 chr14:102792497 nonsynonymous SNV 0.076 3 25 hm5C_associated_SNPs_29967 0 0 1 0 0 chromatin 1 0.500231643921846 1 0.999536712156307 hm5C_site_30192 DeepMRMD:1;iRNA_m5C:0.999536712156307 30193 chr15 36989588 36989588 1 + C A LUSC 36989578 + 36989558 36989598 41 GACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTA GACTTGCTTCTAGAGAAAAACCTGTCCTTCATAGGTAAGTA < 41bp 1 0.11578866861956 1 0.0815106332302094 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989578 chr15:36989588 nonsynonymous SNV 0.994 1 31 hm5C_associated_SNPs_29968 0 0 1 0 2 Cytosol 1 0.50023164391989 1 0.99953671216022 hm5C_site_30193 DeepMRMD:1;iRNA_m5C:0.99953671216022 30194 chr15 36989588 36989588 1 + C A LUSC 36989579 + 36989559 36989599 41 ACTTGCTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTAT ACTTGCTTCTAGAGAAAAACCTGTCCTTCATAGGTAAGTAT < 41bp 1 0.218320903312684 1 0.0462746620178223 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989579 chr15:36989588 nonsynonymous SNV 0.994 1 30 hm5C_associated_SNPs_29969 0 0 1 0 2 Cytosol 1 0.500231644526817 1 0.999536710946366 hm5C_site_30194 DeepMRMD:1;iRNA_m5C:0.999536710946366 30195 chr15 36989588 36989588 1 + C A LUSC 36989584 + 36989564 36989604 41 CTTCTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTC CTTCTAGAGAAAAACCTGTCCTTCATAGGTAAGTATTATTC < 41bp 1 0.439058818021973 1 0.454440534114838 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989584 chr15:36989588 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_29970 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30195 DeepMRMD:1;iRNA_m5C:0.999536712157815 30196 chr15 36989588 36989588 1 + C A LUSC 36989587 + 36989567 36989607 41 CTAGAGAAAAACCTGTCCTTCCTAGGTAAGTATTATTCACA CTAGAGAAAAACCTGTCCTTCATAGGTAAGTATTATTCACA < 41bp 1 0.238090786155318 1 0.103141605854034 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989587 chr15:36989588 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_29971 0 0 1 0 2 Cytosol 1 0.500231597362505 1 0.999536805274989 hm5C_site_30196 DeepMRMD:1;iRNA_m5C:0.999536805274989 30197 chr1 44446880 44446880 1 + G A LUSC 44446876 + 44446856 44446896 41 GCTGGAGCGCGTCTGCAAGGCTGTGCTCCTTCTCTGCCTGC GCTGGAGCGCGTCTGCAAGGCTGTACTCCTTCTCTGCCTGC < 41bp 1 0.679042749286943 1 0.119991481304169 experiment 0.641914501426115 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control B4GALT2 ENSG00000117411 CDS Human protein_coding chr1:44446876 chr1:44446880 synonymous SNV . 0 25 hm5C_associated_SNPs_29972 0 0 1 0 1 Cytosol 1 0.500231643919341 1 0.999536712161318 hm5C_site_30197 DeepMRMD:1;iRNA_m5C:0.999536712161318 30198 chr18 13059268 13059268 1 + G A LUSC 13059272 + 13059252 13059292 41 GCAGAAGCTTTGGCCAGCACCGTCACTCTCACTGCCATTGC GCAGAAGCTTTGGCCAACACCGTCACTCTCACTGCCATTGC < 41bp 1 0.579796081322083 1 0.235611915588379 experiment 0.840407837355834 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13059272 chr18:13059268 nonsynonymous SNV 0.027 3 17 hm5C_associated_SNPs_29973 0 0 1 0 0 Nucleus 1 0.500269567423466 1 0.999460865153068 hm5C_site_30198 DeepMRMD:1;iRNA_m5C:0.999460865153068 30199 chr16 70170101 70170101 1 + T A LUSC 70170114 + 70170094 70170134 41 CAGAGCCTCTGTTGAGTTCCCTTCTGAGGAGGATGCCAGAA CAGAGCCACTGTTGAGTTCCCTTCTGAGGAGGATGCCAGAA < 41bp 1 0.128365852235769 1 0.066288024187088 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70170114 chr16:70170101 synonymous SNV . 0 8 hm5C_associated_SNPs_29974 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30199 DeepMRMD:1;iRNA_m5C:0.999536712157815 30200 chr20 44571753 44571753 1 + G T LUSC 44571747 + 44571727 44571767 41 GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCGC GTCCTGCAGGCATTGAGCCTCCACGGTAGTCTTTCAACCGC < 41bp 1 0.417867379519939 1 0.55424177646637 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571747 chr20:44571753 stopgain 0.920 1 27 hm5C_associated_SNPs_29975 0 0 1 0 1 chromatin 1 0.5002316439207 0.89151644706726 0.999536712158601 hm5C_site_30200 DeepMRMD:0.89151644706726;iRNA_m5C:0.999536712158601 30201 chr7 100867103 100867103 1 + G T LUSC 100867120 + 100867100 100867140 41 TCTGGGGACCCACCAGGAGACCAGGTGAGCATGAGACCTGC TCTTGGGACCCACCAGGAGACCAGGTGAGCATGAGACCTGC < 41bp 1 0.673325306459883 1 0.641318142414093 experiment 0.653349387080234 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867120 chr7:100867103 synonymous SNV . 0 4 hm5C_associated_SNPs_29976 0 0 1 0 1 Cytosol 1 0.500231643921091 0.717363715171814 0.999536712157819 hm5C_site_30201 DeepMRMD:0.717363715171814;iRNA_m5C:0.999536712157819 30202 chr12 125612718 125612718 1 + A G LUSC 125612714 + 125612694 125612734 41 CCATTGCTTGCAGGAGGCACCGACATCATCTCCTGCTTCAT CCATTGCTTGCAGGAGGCACCGACGTCATCTCCTGCTTCAT < 41bp 1 0.271232298492229 1 0.240666210651398 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125612714 chr12:125612718 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_29978 0 0 1 0 1 Ribosome 1 0.500231546098652 1 0.999536907802696 hm5C_site_30202 DeepMRMD:1;iRNA_m5C:0.999536907802696 30203 chr13 111111180 111111180 1 + C A LUSC 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ACGAAGCTATCAAAGGTCTTCCGGGACTGACAGGACCCAAG < 41bp 1 0.280299006615926 1 0.758420944213867 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111180 nonsynonymous SNV 0.840 4 30 hm5C_associated_SNPs_29979 0 0 1 0 1 Cytosol 1 0.500231643921077 0.483158111572266 0.999536712157845 hm5C_site_30203 DeepMRMD:0.483158111572266;iRNA_m5C:0.999536712157845 30204 chr6 15496763 15496763 1 + G T LUSC 15496746 + 15496726 15496766 41 GGGCGGCAGCTGCGGGAGGGCCTGCAGCTGCGGGAGGGGCT GGGCGGCAGCTGCGGGAGGGCCTGCAGCTGCGGGAGGTGCT < 41bp 1 0.0655683684961463 1 0.181064665317535 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15496746 chr6:15496763 nonsynonymous SNV 1.000 5 38 hm5C_associated_SNPs_29981 0 0 1 0 0 Cytosol 1 0.500231643917388 1 0.999536712165224 hm5C_site_30204 DeepMRMD:1;iRNA_m5C:0.999536712165224 30205 chr10 45486418 45486418 1 + C T LUSC 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGT < 41bp 1 0.0561417519764495 1 0.275027960538864 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486418 synonymous SNV . 0 41 hm5C_associated_SNPs_29983 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30205 DeepMRMD:1;iRNA_m5C:0.999536712157815 30206 chr7 94917904 94917904 1 + G T LUSC 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCATGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA < 41bp 1 0.545384492530848 1 0.179074734449387 experiment 0.909231014938305 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917904 nonsynonymous SNV 0.281 0 8 hm5C_associated_SNPs_29984 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30206 DeepMRMD:1;iRNA_m5C:0.999536712157815 30207 chr5 6651984 6651984 1 + G C LUSC 6651967 + 6651947 6651987 41 TTCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGG TTCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGCAGG < 41bp 1 0.247099087464026 1 0.137109309434891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651967 chr5:6651984 nonsynonymous SNV 0.862 1 38 hm5C_associated_SNPs_29985 0 0 1 2 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_30207 DeepMRMD:1;iRNA_m5C:0.999536712157816 30208 chr5 6651984 6651984 1 + G C LUSC 6651968 + 6651948 6651988 41 TCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGA TCCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGCAGGA < 41bp 1 0.0458020601177971 1 0.293656826019287 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651968 chr5:6651984 nonsynonymous SNV 0.862 1 37 hm5C_associated_SNPs_29986 0 0 1 2 1 Ribosome 1 0.500231643920973 1 0.999536712158055 hm5C_site_30208 DeepMRMD:1;iRNA_m5C:0.999536712158055 30209 chr5 6651984 6651984 1 + G C LUSC 6651969 + 6651949 6651989 41 CCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGGAGGAA CCTAAGGTGCTTAATTTACCCATTTCTGATGCGAGCAGGAA < 41bp 1 0.0644733303902616 1 0.145225822925568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6651969 chr5:6651984 nonsynonymous SNV 0.862 1 36 hm5C_associated_SNPs_29987 0 0 1 2 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_30209 DeepMRMD:1;iRNA_m5C:0.999536712157816 30210 chr1 218458684 218458684 1 + G T LUSC 218458666 + 218458646 218458686 41 CCGGCGCAGAAAAATGGCAGCCGCCGCTCCGGACTCACGTG CCGGCGCAGAAAAATGGCAGCCGCCGCTCCGGACTCACTTG < 41bp 1 0.337459569533826 1 0.402607381343842 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RRP15 ENSG00000067533 CDS Human protein_coding chr1:218458666 chr1:218458684 nonsynonymous SNV 0.783 1 39 hm5C_associated_SNPs_29988 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30210 DeepMRMD:1;iRNA_m5C:0.999536712157815 30211 chr11 65267905 65267905 1 + G A LUSC 65267924 + 65267904 65267944 41 AGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGA AAACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGA < 41bp 1 0.648491687785533 1 0.826244592666626 experiment 0.703016624428934 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267924 chr11:65267905 . . 0 2 hm5C_associated_SNPs_29990 0 0 1 1 0 unknown 1 0.500231643945526 0.347510814666748 0.999536712108949 hm5C_site_30211 DeepMRMD:0.347510814666748;iRNA_m5C:0.999536712108949 30212 chr11 65268000 65268000 1 + G C LUSC 65268011 + 65267991 65268031 41 ATAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA ATAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGA < 41bp 1 0.311400660115329 1 0.276459991931915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268011 chr11:65268000 . . 0 10 hm5C_associated_SNPs_29991 0 0 1 11 0 unknown 1 0.500231643893341 1 0.999536712213319 hm5C_site_30212 DeepMRMD:1;iRNA_m5C:0.999536712213319 30213 chr11 65268000 65268000 1 + G C LUSC 65268012 + 65267992 65268032 41 TAGGAAAAGAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA TAGGAAAACAGTCCAGGAGCCAGTGCGATTTGGTGAAGGAA < 41bp 1 0.355771876350157 1 0.33296012878418 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268012 chr11:65268000 . . 0 9 hm5C_associated_SNPs_29992 0 0 1 11 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30213 DeepMRMD:1;iRNA_m5C:0.999536712157815 30214 chr9 136216887 136216887 1 + G C LUSC 136216873 + 136216853 136216893 41 AAGGCTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACC AAGGCTGCTGGCAAAGGGGACGTCCCAACGAAGACACCACC < 41bp 1 0.128454258638051 1 0.333891749382019 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216873 chr9:136216887 nonsynonymous SNV 0.896 2 35 hm5C_associated_SNPs_29993 0 0 1 0 1 Cytosol 1 0.500231645381367 1 0.999536709237265 hm5C_site_30214 DeepMRMD:1;iRNA_m5C:0.999536709237265 30215 chr9 136216887 136216887 1 + G C LUSC 136216877 + 136216857 136216897 41 CTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACCTGTC CTGCTGGCAAAGGGGACGTCCCAACGAAGACACCACCTGTC < 41bp 1 0.175638395081607 1 0.14045512676239 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216877 chr9:136216887 nonsynonymous SNV 0.896 2 31 hm5C_associated_SNPs_29994 0 0 1 0 1 Cytosol 1 0.5002316440944 1 0.999536711811199 hm5C_site_30215 DeepMRMD:1;iRNA_m5C:0.999536711811199 30216 chr18 74631815 74631815 1 + G T LUSC 74631822 + 74631802 74631842 41 CACTTTCACGGAGGAGGAGACAGCCCAGTTAGCCAAGATCC CACTTTCACGGAGTAGGAGACAGCCCAGTTAGCCAAGATCC < 41bp 1 0.306732561463856 1 0.372455537319183 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74631822 chr18:74631815 stopgain 0.998 1 14 hm5C_associated_SNPs_29996 0 0 1 0 1 Cytosol 1 0.500231647558103 1 0.999536704883794 hm5C_site_30216 DeepMRMD:1;iRNA_m5C:0.999536704883794 30217 chr1 236711372 236711372 1 + G C LUSC 236711377 + 236711357 236711397 41 GGCGTACACAGCCTGGAGTACAAACACAGATTTAAAGAGCT GGCGTACACAGCCTGCAGTACAAACACAGATTTAAAGAGCT < 41bp 1 0.0659902580059509 1 0.116022676229477 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236711377 chr1:236711372 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_29997 0 0 1 0 1 Cytosol 1 0.500231644606094 1 0.999536710787812 hm5C_site_30217 DeepMRMD:1;iRNA_m5C:0.999536710787812 30218 chr1 10328302 10328302 1 + C A LUSC 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATAATGAGAACAACCTTTCCACTGAGAAGGTAGG < 41bp 1 0.0031994542723983 1 0.0965732932090759 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328302 nonsynonymous SNV 0.858 2 17 hm5C_associated_SNPs_29998 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_30218 DeepMRMD:1;iRNA_m5C:0.999536712157815 30219 chrX 68059886 68059886 1 + G T LUSC 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTCAAGATGGCCACACAGTCCCCTGGTAGTCGGGGCTCCCT < 41bp 1 0.198166450447158 1 0.0976914465427399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059886 nonsynonymous SNV 0.830 1 19 hm5C_associated_SNPs_29999 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643922482 1 0.999536712155036 hm5C_site_30219 DeepMRMD:1;iRNA_m5C:0.999536712155036 30220 chr15 22993108 22993108 1 + G A LUSC 22993125 + 22993105 22993145 41 CGGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGA CGGAAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGA < 41bp 1 0.237977911652656 1 0.0632771551609039 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993125 chr15:22993108 nonsynonymous SNV . 0 4 hm5C_associated_SNPs_30000 0 0 1 0 1 Cytosol 1 0.500231643921128 1 0.999536712157744 hm5C_site_30220 DeepMRMD:1;iRNA_m5C:0.999536712157744 30221 chr15 22993108 22993108 1 + G A LUSC 22993126 + 22993106 22993146 41 GGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGAG GGAAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGAG < 41bp 1 0.395440161520979 1 0.319447696208954 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993126 chr15:22993108 nonsynonymous SNV . 0 3 hm5C_associated_SNPs_30001 0 0 1 0 1 Cytosol 1 0.500231643869852 1 0.999536712260295 hm5C_site_30221 DeepMRMD:1;iRNA_m5C:0.999536712260295 30222 chr11 65273628 65273628 1 + C G LUSC 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTG < 41bp 1 0.617647500243821 1 0.344736516475677 experiment 0.764704999512358 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273628 . . 0 41 hm5C_associated_SNPs_30002 0 0 1 0 0 unknown 1 0.500231667029564 1 0.999536665940872 hm5C_site_30222 DeepMRMD:1;iRNA_m5C:0.999536665940872 30223 chr1 28607288 28607288 1 + G A LUSC 28607298 + 28607278 28607318 41 TACGCCCTCCGTGCCATCACCCGCTACATGACCTGACTCCT TACGCCCTCCATGCCATCACCCGCTACATGACCTGACTCCT < 41bp 1 0.12629339729761 1 0.424368739128113 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28607298 chr1:28607288 nonsynonymous SNV 0.966 4 11 hm5C_associated_SNPs_30003 0 0 1 0 1 Ribosome 1 0.50023165962837 1 0.99953668074326 hm5C_site_30223 DeepMRMD:1;iRNA_m5C:0.99953668074326 30224 chr2 46985754 46985754 1 + A T LUSC 46985774 + 46985754 46985794 41 AATGTGGACATGAACTCCAACAGATGTTTGTCTGTCAAAGA TATGTGGACATGAACTCCAACAGATGTTTGTCTGTCAAAGA < 41bp 1 0.411863457381309 1 0.19122377038002 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOCS5 ENSG00000171150 CDS Human protein_coding chr2:46985774 chr2:46985754 nonsynonymous SNV 0.749 1 1 hm5C_associated_SNPs_30004 0 0 1 0 1 Cytosol 1 0.500231594095564 1 0.999536811808872 hm5C_site_30224 DeepMRMD:1;iRNA_m5C:0.999536811808872 30225 chr8 22106607 22106607 1 + C T LUSC 22106604 + 22106584 22106624 41 AAGAGGCCAAGATGAAGGCTCCTCCCAAAGCAGCCAGGAAG AAGAGGCCAAGATGAAGGCTCCTTCCAAAGCAGCCAGGAAG < 41bp 1 0.00791114605616628 1 0.085351288318634 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POLR3D ENSG00000168495 CDS Human protein_coding chr8:22106604 chr8:22106607 nonsynonymous SNV 0.933 0 24 hm5C_associated_SNPs_30005 0 0 1 0 1 Ribosome 1 0.500231499989722 1 0.999537000020556 hm5C_site_30225 DeepMRMD:1;iRNA_m5C:0.999537000020556 30226 chr1 76253248 76253248 1 + G T LUSC 76253245 + 76253225 76253265 41 ACACTTTGTTATTGGAGAAACATGCAGATTATATCGCATCC ACACTTTGTTATTGGAGAAACATTCAGATTATATCGCATCC < 41bp 1 0.0937155281289494 1 0.126538038253784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253245 chr1:76253248 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_30006 0 0 1 0 2 Nucleus 1 0.500231643921665 1 0.99953671215667 hm5C_site_30226 DeepMRMD:1;iRNA_m5C:0.99953671215667 30227 chr12 132464247 132464247 1 + C A LUSC 132464239 + 132464219 132464259 41 TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCAGGGAGC TTTTTCATCTTTTTTCCCAGCAGCAAGCACTCGCAGGGAGC < 41bp 1 0.22992883023013 1 0.241592735052109 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132464239 chr12:132464247 synonymous SNV . 0 29 hm5C_associated_SNPs_30007 0 0 1 0 3 Cytosol 1 0.500231643920899 1 0.999536712158202 hm5C_site_30227 DeepMRMD:1;iRNA_m5C:0.999536712158202 30228 chr2 202899958 202899958 1 + G T LUSC 202899977 + 202899957 202899997 41 GGGCCTCAGATGGCAGGGGGCGTCCCGCCTTCCCCTTCTCA GTGCCTCAGATGGCAGGGGGCGTCCCGCCTTCCCCTTCTCA < 41bp 1 0.163324410402426 1 0.129346907138824 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZD7 ENSG00000155760 CDS Human protein_coding chr2:202899977 chr2:202899958 synonymous SNV . 0 2 hm5C_associated_SNPs_30008 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30228 DeepMRMD:1;iRNA_m5C:0.999536712157815 30229 chr12 95868045 95868045 1 + G T LUSC 95868059 + 95868039 95868079 41 CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA CTCTACTGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA < 41bp 1 0.281997608072049 1 0.510487496852875 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95868059 chr12:95868045 synonymous SNV . 0 7 hm5C_associated_SNPs_30009 0 0 1 0 1 Ribosome 1 0.500232514731784 0.97902500629425 0.999534970536431 hm5C_site_30229 DeepMRMD:0.97902500629425;iRNA_m5C:0.999534970536431 30230 chr11 65826308 65826308 1 + G C LUSC 65826306 + 65826286 65826326 41 TCCTCCTCTTGACAGAAAAACCGGAAGCGTAGGAACCGAAA TCCTCCTCTTGACAGAAAAACCCGAAGCGTAGGAACCGAAA < 41bp 1 0.564129386269907 1 0.457736670970917 experiment 0.871741227460185 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826306 chr11:65826308 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_30010 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30230 DeepMRMD:1;iRNA_m5C:0.999536712157815 30231 chr11 65826308 65826308 1 + G C LUSC 65826307 + 65826287 65826327 41 CCTCCTCTTGACAGAAAAACCGGAAGCGTAGGAACCGAAAG CCTCCTCTTGACAGAAAAACCCGAAGCGTAGGAACCGAAAG < 41bp 1 0.61105125559943 1 0.377191841602325 experiment 0.77789748880114 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826307 chr11:65826308 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_30011 0 0 1 0 1 Nucleus 1 0.500231643828063 1 0.999536712343874 hm5C_site_30231 DeepMRMD:1;iRNA_m5C:0.999536712343874 30232 chr19 49377535 49377535 1 + G T LUSC 49377526 + 49377506 49377546 41 TGAAGGCCTGGGTGTATTGGCCAGGAGAGGACACAGAGGAA TGAAGGCCTGGGTGTATTGGCCAGGAGAGTACACAGAGGAA < 41bp 1 0.480343806246644 1 0.727189660072327 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377526 chr19:49377535 nonsynonymous SNV 0.962 4 30 hm5C_associated_SNPs_30012 0 0 1 0 0 Cytosol 1 0.500231643921092 0.545620679855346 0.999536712157815 hm5C_site_30232 DeepMRMD:0.545620679855346;iRNA_m5C:0.999536712157815 30233 chr1 22336335 22336335 1 + C T LUSC 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACGGTGTTCACTCGAGTCTCCGCCTTCATTGACTGGAT < 41bp 1 0.628609119932629 1 0.388385236263275 experiment 0.742781760134742 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336335 synonymous SNV . 0 33 hm5C_associated_SNPs_30014 0 0 0 0 1 Endoplasmic reticulum 1 0.500229919894908 1 0.999540160210184 hm5C_site_30233 DeepMRMD:1;iRNA_m5C:0.999540160210184 30234 chr1 22336335 22336335 1 + C T LUSC 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTCGAGTCTCCGCCTTCATTGACTGGATTGA < 41bp 1 0.358831467024346 1 0.0531032681465149 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336335 synonymous SNV . 0 30 hm5C_associated_SNPs_30015 0 0 0 0 1 Endoplasmic reticulum 1 0.500231927046353 1 0.999536145907294 hm5C_site_30234 DeepMRMD:1;iRNA_m5C:0.999536145907294 30235 chr1 22336335 22336335 1 + C T LUSC 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTCGAGTCTCCGCCTTCATTGACTGGATTGAGGA < 41bp 1 0.468322024901362 1 0.753262281417847 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336335 synonymous SNV . 0 27 hm5C_associated_SNPs_30016 0 0 0 0 1 Endoplasmic reticulum 1 0.500231705405066 0.493475437164306 0.999536589189868 hm5C_site_30235 DeepMRMD:0.493475437164306;iRNA_m5C:0.999536589189868 30236 chr1 22336335 22336335 1 + C T LUSC 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTCGAGTCTCCGCCTTCATTGACTGGATTGAGGAGGT < 41bp 1 0.19202750531065 1 0.180877149105072 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336335 synonymous SNV . 0 24 hm5C_associated_SNPs_30017 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392109 1 0.99953671215782 hm5C_site_30236 DeepMRMD:1;iRNA_m5C:0.99953671215782 30237 chr6 133844288 133844288 1 + G T LUSC 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGGTGCTTTCCCCATTTAGAATATTTACAGTG < 41bp 1 0.0798557491179707 1 0.242118328809738 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844288 stopgain 1.000 1 26 hm5C_associated_SNPs_30018 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30237 DeepMRMD:1;iRNA_m5C:0.999536712157815 30238 chr6 133844288 133844288 1 + G T LUSC 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGGTGCTTTCCCCATTTAGAATATTTACAGTGC < 41bp 1 0.0446343900263251 1 0.238876193761826 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844288 stopgain 1.000 1 25 hm5C_associated_SNPs_30019 0 0 0 0 2 Cytosol 1 0.500231643922781 1 0.999536712154439 hm5C_site_30238 DeepMRMD:1;iRNA_m5C:0.999536712154439 30239 chr17 35307618 35307618 1 + G C LUSC 35307610 + 35307590 35307630 41 TAGAAAACTGGCATCAGCCTCCCTCTTGGACACGGACAAAA TAGAAAACTGGCATCAGCCTCCCTCTTGCACACGGACAAAA < 41bp 1 0.0666448355761352 1 0.0796939730644226 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AATF ENSG00000108270 CDS Human other chr17:35307610 chr17:35307618 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_30020 0 0 1 0 1 chromatin 1 0.500232955957517 1 0.999534088084965 hm5C_site_30239 DeepMRMD:1;iRNA_m5C:0.999534088084965 30240 chr17 35307618 35307618 1 + G C LUSC 35307611 + 35307591 35307631 41 AGAAAACTGGCATCAGCCTCCCTCTTGGACACGGACAAAAG AGAAAACTGGCATCAGCCTCCCTCTTGCACACGGACAAAAG < 41bp 1 0.0616189432469465 1 0.060973733663559 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AATF ENSG00000108270 CDS Human other chr17:35307611 chr17:35307618 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_30021 0 0 1 0 1 chromatin 1 0.500231643947318 1 0.999536712105364 hm5C_site_30240 DeepMRMD:1;iRNA_m5C:0.999536712105364 30241 chr17 35307618 35307618 1 + G C LUSC 35307612 + 35307592 35307632 41 GAAAACTGGCATCAGCCTCCCTCTTGGACACGGACAAAAGG GAAAACTGGCATCAGCCTCCCTCTTGCACACGGACAAAAGG < 41bp 1 0.136296561463245 1 0.105169534683228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AATF ENSG00000108270 CDS Human other chr17:35307612 chr17:35307618 nonsynonymous SNV 0.999 3 27 hm5C_associated_SNPs_30022 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30241 DeepMRMD:1;iRNA_m5C:0.999536712157815 30242 chr17 35307618 35307618 1 + G C LUSC 35307614 + 35307594 35307634 41 AAACTGGCATCAGCCTCCCTCTTGGACACGGACAAAAGGTA AAACTGGCATCAGCCTCCCTCTTGCACACGGACAAAAGGTA < 41bp 1 0.089642690184132 1 0.449187278747559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35307614 chr17:35307618 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_30023 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30242 DeepMRMD:1;iRNA_m5C:0.999536712157815 30243 chr21 45560138 45560138 1 + G A LUSC 45560135 + 45560115 45560155 41 CTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAA CTTTTGTCTCCCGGTAGGAGCACATTTGCCGTGGACGGGAA < 41bp 1 0.336136930561073 1 0.150154560804367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560135 chr21:45560138 synonymous SNV . 0 24 hm5C_associated_SNPs_30024 0 0 1 0 2 Ribosome 1 0.500231643956913 1 0.999536712086174 hm5C_site_30243 DeepMRMD:1;iRNA_m5C:0.999536712086174 30244 chr19 14037666 14037666 1 + C G LUSC 14037657 + 14037637 14037677 41 GAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA GAAGCTCAGAAAGACAAGACCAGTGTGATGAAGAACACAGA < 41bp 1 0.231589685158221 1 0.211398661136627 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14037657 chr19:14037666 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_30025 0 0 0 0 2 chromatin 1 0.500231503250604 1 0.999536993498791 hm5C_site_30244 DeepMRMD:1;iRNA_m5C:0.999536993498791 30245 chr17 30692393 30692393 1 + C G LUSC 30692381 + 30692361 30692401 41 CTGTTCCACGTCCTGGAATTCCTCCAATGACTCAAGCACAG CTGTTCCACGTCCTGGAATTCCTCCAATGACTGAAGCACAG < 41bp 1 0.125268942460601 1 0.422957301139832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692381 chr17:30692393 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_30026 0 0 1 0 1 Ribosome 1 0.500231643921122 1 0.999536712157757 hm5C_site_30245 DeepMRMD:1;iRNA_m5C:0.999536712157757 30246 chr1 228468290 228468290 1 + C T LUSC 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCAGAGGAGCGCGGCACCTTGGCCCTGCAGTGTGAAGT < 41bp 1 0.0892892580444111 1 0.0588892698287964 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468290 synonymous SNV . 0 22 hm5C_associated_SNPs_30027 0 0 0 0 1 Ribosome 1 0.500231643911985 1 0.99953671217603 hm5C_site_30246 DeepMRMD:1;iRNA_m5C:0.99953671217603 30247 chr16 1793359 1793359 1 + A T LUSC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGATCGTGTTCCCCCTGGCTGACGGCACGGTACG < 41bp 1 0.175580983868428 1 0.0924326777458191 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793359 nonsynonymous SNV 0.988 2 11 hm5C_associated_SNPs_30028 0 0 1 0 2 chromatin 1 0.500231643912559 1 0.999536712174882 hm5C_site_30247 DeepMRMD:1;iRNA_m5C:0.999536712174882 30248 chr11 67075202 67075202 1 + C G LUSC 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCGTGGCGGGTC < 41bp 1 0.694947355012638 1 0.822135746479034 experiment 0.610105289974723 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075202 nonsynonymous SNV 0.073 0 32 hm5C_associated_SNPs_30029 0 0 0 0 1 nucleus 1 0.500231642140626 0.355728507041932 0.999536715718748 hm5C_site_30248 DeepMRMD:0.355728507041932;iRNA_m5C:0.999536715718748 30249 chrX 73046073 73046073 1 + C A LUSC 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.300835902111627 1 0.812818765640259 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046073 . . 0 17 hm5C_associated_SNPs_30030 0 0 1 10 0 unknown 1 0.500231644428333 0.374362468719482 0.999536711143333 hm5C_site_30249 DeepMRMD:0.374362468719482;iRNA_m5C:0.999536711143333 30250 chrX 73046073 73046073 1 + C A LUSC 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAATG < 41bp 1 0.079236665546873 1 0.0560686588287354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046073 . . 0 23 hm5C_associated_SNPs_30031 0 0 1 10 0 unknown 1 0.5002316440304 1 0.9995367119392 hm5C_site_30250 DeepMRMD:1;iRNA_m5C:0.9995367119392 30251 chrX 73046073 73046073 1 + C A LUSC 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCATGCTCTCTAGAGAAAAAT < 41bp 1 0.0312786087530922 1 0.0722248554229736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046073 . . 0 24 hm5C_associated_SNPs_30032 0 0 1 10 0 unknown 1 0.500231635668938 1 0.999536728662124 hm5C_site_30251 DeepMRMD:1;iRNA_m5C:0.999536728662124 30252 chr16 28970404 28970404 1 + G A LUSC 28970409 + 28970389 28970429 41 AAACACCAGACACTGGAAGTCTCACTGTCTCGAGTGAGTGG AAACACCAGACACTGAAAGTCTCACTGTCTCGAGTGAGTGG < 41bp 1 0.324991872980054 1 0.164956897497177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28970409 chr16:28970404 nonsynonymous SNV 0.968 1 16 hm5C_associated_SNPs_30033 0 0 1 0 2 Ribosome 1 0.500267141081372 1 0.999465717837256 hm5C_site_30252 DeepMRMD:1;iRNA_m5C:0.999465717837256 30253 chr6 133783597 133783597 1 + T C LUSC 133783602 + 133783582 133783622 41 CAGACAGGACAGCCCTACAGCTTGCCCACTTACGGTATTTC CAGACAGGACAGCCCCACAGCTTGCCCACTTACGGTATTTC < 41bp 1 0.0719484178796824 1 0.0752215981483459 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783602 chr6:133783597 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_30036 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30253 DeepMRMD:1;iRNA_m5C:0.999536712157815 30254 chr12 52370296 52370296 1 + C G LUSC 52370279 + 52370259 52370299 41 GAGACTGGACATGGAAGATCCCTCATGTGAGATGTGTCTCT GAGACTGGACATGGAAGATCCCTCATGTGAGATGTGTGTCT < 41bp 1 0.243325760653133 1 0.641049683094025 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52370279 chr12:52370296 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_30037 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643995004 0.71790063381195 0.999536712009993 hm5C_site_30254 DeepMRMD:0.71790063381195;iRNA_m5C:0.999536712009993 30255 chr7 5338901 5338901 1 + G A LUSC 5338900 + 5338880 5338920 41 TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCCGACATG TGCACCGCTACGTGGTGGCGCAGGTGATCTGGGCCGACATG < 41bp 1 0.512870965203901 1 0.316390872001648 experiment 0.974258069592198 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338900 chr7:5338901 nonsynonymous SNV 0.835 3 22 hm5C_associated_SNPs_30038 0 0 0 0 1 Endoplasmic reticulum 1 0.500231530398093 1 0.999536939203813 hm5C_site_30255 DeepMRMD:1;iRNA_m5C:0.999536939203813 30256 chr4 57179515 57179515 1 + G T LUSC 57179501 + 57179481 57179521 41 AGCACAAGCTGGCTGTTAAGCCAAAAAAACAGAGGGTGTCA AGCACAAGCTGGCTGTTAAGCCAAAAAAACAGAGTGTGTCA < 41bp 1 0.459163902036614 1 0.459245085716248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57179501 chr4:57179515 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_30040 0 0 0 0 1 cytosol 1 0.500231650176338 1 0.999536699647324 hm5C_site_30256 DeepMRMD:1;iRNA_m5C:0.999536699647324 30257 chr19 14040228 14040228 1 + G A LUSC 14040234 + 14040214 14040254 41 CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA CTCAGTGTGCTGGCATTTGACCAAGAGCGTCTGGAGCGGAA < 41bp 1 0.40016227514314 1 0.523492276668549 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040234 chr19:14040228 synonymous SNV . 0 15 hm5C_associated_SNPs_30041 0 0 1 0 2 chromatin 1 0.50023160726684 0.953015446662902 0.999536785466321 hm5C_site_30257 DeepMRMD:0.953015446662902;iRNA_m5C:0.999536785466321 30258 chr14 58698807 58698807 1 + A T LUSC 58698787 + 58698767 58698807 41 TTTCTTTTTAATAACAGTGTCCGATAGACACCAGGAAGCAA TTTCTTTTTAATAACAGTGTCCGATAGACACCAGGAAGCAT < 41bp 1 0.124932627542242 1 0.0842564404010773 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58698787 chr14:58698807 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_30042 0 0 1 0 0 Ribosome 1 0.500231692538814 1 0.999536614922371 hm5C_site_30258 DeepMRMD:1;iRNA_m5C:0.999536614922371 30259 chr11 67075204 67075204 1 + G A LUSC 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTAGCGGGTC < 41bp 1 0.652482808425626 1 0.753484070301056 experiment 0.695034383148749 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075204 nonsynonymous SNV 0.101 0 34 hm5C_associated_SNPs_30043 0 0 0 0 1 nucleus 1 0.500231643921151 0.493031859397888 0.999536712157697 hm5C_site_30259 DeepMRMD:0.493031859397888;iRNA_m5C:0.999536712157697 30260 chr6 84629158 84629158 1 + A G LUSC 84629154 + 84629134 84629174 41 AGACTCTTTAGTCACCATTGCCATATATACTAAACAGAAGG AGACTCTTTAGTCACCATTGCCATGTATACTAAACAGAAGG < 41bp 1 0.0538000758415761 1 0.403558313846588 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84629154 chr6:84629158 nonsynonymous SNV 0.980 2 25 hm5C_associated_SNPs_30044 0 0 1 0 2 Ribosome 1 0.500231642339882 1 0.999536715320236 hm5C_site_30260 DeepMRMD:1;iRNA_m5C:0.999536715320236 30261 chr3 148559709 148559709 1 + G A LUSC 148559690 + 148559670 148559710 41 GAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGA GAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAAA < 41bp 1 0.522308704107962 1 0.668289184570312 experiment 0.955382591784077 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559690 chr3:148559709 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_30045 0 0 0 0 2 exosome 1 0.500201913768836 0.663421630859376 0.999596172462327 hm5C_site_30261 DeepMRMD:0.663421630859376;iRNA_m5C:0.999596172462327 30262 chr3 148559709 148559709 1 + G A LUSC 148559693 + 148559673 148559713 41 TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGT TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAAAGGT < 41bp 1 0.129459809808948 1 0.436480909585953 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559693 chr3:148559709 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_30046 0 0 0 0 2 exosome 1 0.500231868815339 1 0.999536262369323 hm5C_site_30262 DeepMRMD:1;iRNA_m5C:0.999536262369323 30263 chr3 148559709 148559709 1 + G A LUSC 148559694 + 148559674 148559714 41 GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGTC GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAAAGGTC < 41bp 1 0.420139447047504 1 0.381297290325165 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559694 chr3:148559709 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_30047 0 0 0 0 2 exosome 1 0.50023164392287 1 0.99953671215426 hm5C_site_30263 DeepMRMD:1;iRNA_m5C:0.99953671215426 30264 chr19 6833256 6833256 1 + G C LUSC 6833263 + 6833243 6833283 41 GATGTTCTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC GATGTTCTCCTTTCAGGAGACCACATCCTGCAAGGCCTGTC < 41bp 1 0.378739677221029 1 0.173932582139969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833263 chr19:6833256 nonsynonymous SNV 0.994 2 14 hm5C_associated_SNPs_30048 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921105 1 0.999536712157791 hm5C_site_30264 DeepMRMD:1;iRNA_m5C:0.999536712157791 30265 chr22 40660725 40660725 1 + A G LUSC 40660713 + 40660693 40660733 41 CTCAACCCTTGGAGGTGCTGCTGCTTCAAATTATGCAAATT CTCAACCCTTGGAGGTGCTGCTGCTTCAAATTGTGCAAATT < 41bp 1 0.0833771770906425 1 0.0514258146286011 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40660713 chr22:40660725 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_30049 0 0 1 0 0 Cytosol 1 0.500231642139929 1 0.999536715720142 hm5C_site_30265 DeepMRMD:1;iRNA_m5C:0.999536715720142 30266 chr7 142457357 142457357 1 + A T LUSC 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATGAATCCACTCCTGATCCTTTCCTTTGTG < 41bp 1 0.255805525734731 1 0.0811909735202789 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457357 nonsynonymous SNV 0.007 1 33 hm5C_associated_SNPs_30050 0 0 0 2 1 Cytosol 1 0.50023164837016 1 0.99953670325968 hm5C_site_30266 DeepMRMD:1;iRNA_m5C:0.99953670325968 30267 chr7 142457357 142457357 1 + A T LUSC 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATGAATCCACTCCTGATCCTTTCCTTTGTGGC < 41bp 1 0.204979556084177 1 0.197391301393509 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457357 nonsynonymous SNV 0.007 1 31 hm5C_associated_SNPs_30051 0 0 0 2 1 Cytosol 1 0.500231645766043 1 0.999536708467915 hm5C_site_30267 DeepMRMD:1;iRNA_m5C:0.999536708467915 30268 chr7 142457357 142457357 1 + A T LUSC 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATGAATCCACTCCTGATCCTTTCCTTTGTGGCA < 41bp 1 0.100145380202614 1 0.229956537485123 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457357 nonsynonymous SNV 0.007 1 30 hm5C_associated_SNPs_30052 0 0 0 2 1 Cytosol 1 0.500243574168995 1 0.99951285166201 hm5C_site_30268 DeepMRMD:1;iRNA_m5C:0.99951285166201 30269 chr7 142457357 142457357 1 + A T LUSC 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATGAATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGC < 41bp 1 0.0196621782102771 1 0.0446183979511261 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457357 nonsynonymous SNV 0.007 1 25 hm5C_associated_SNPs_30053 0 0 0 2 1 Cytosol 1 0.500231643926023 1 0.999536712147953 hm5C_site_30269 DeepMRMD:1;iRNA_m5C:0.999536712147953 30270 chr7 142457357 142457357 1 + A T LUSC 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATGAATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGCT < 41bp 1 0.0262562903662625 1 0.0475067794322968 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457357 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_30054 0 0 0 2 1 Cytosol 1 0.500222566482171 1 0.999554867035659 hm5C_site_30270 DeepMRMD:1;iRNA_m5C:0.999554867035659 30271 chr7 142457357 142457357 1 + A T LUSC 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.0499996042369919 1 0.031903088092804 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457357 nonsynonymous SNV 0.007 1 20 hm5C_associated_SNPs_30055 0 0 0 2 1 Cytosol 1 0.500231640201902 1 0.999536719596195 hm5C_site_30271 DeepMRMD:1;iRNA_m5C:0.999536719596195 30272 chr7 142457357 142457357 1 + A T LUSC 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCACTCCTGATCCTTTCCTTTGTGGCAGCTGCTCGTGA < 41bp 1 0.156215873170273 1 0.245361864566803 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457357 nonsynonymous SNV 0.007 1 19 hm5C_associated_SNPs_30056 0 0 0 2 1 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_30272 DeepMRMD:1;iRNA_m5C:0.99953671215782 30273 chr7 142457357 142457357 1 + A T LUSC 142457367 + 142457347 142457387 41 CCTGATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG CCTGATCCTTTCCTTTGTGGCAGCTGCTCGTGAGTATCATG < 41bp 1 0.312599326084921 1 0.280895888805389 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457367 chr7:142457357 nonsynonymous SNV 0.007 1 11 hm5C_associated_SNPs_30057 0 0 0 2 1 Cytosol 1 0.500230403156619 1 0.999539193686762 hm5C_site_30273 DeepMRMD:1;iRNA_m5C:0.999539193686762 30274 chr7 142457357 142457357 1 + A T LUSC 142457370 + 142457350 142457390 41 GATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC GATCCTTTCCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC < 41bp 1 0.291753036499528 1 0.164523065090179 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457370 chr7:142457357 nonsynonymous SNV 0.007 1 8 hm5C_associated_SNPs_30058 0 0 0 2 1 Cytosol 1 0.50023063589394 1 0.999538728212119 hm5C_site_30274 DeepMRMD:1;iRNA_m5C:0.999538728212119 30275 chr7 142457357 142457357 1 + A T LUSC 142457373 + 142457353 142457393 41 CCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC CCTTTCCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC < 41bp 1 0.511738413848006 1 0.211803942918777 experiment 0.976523172303988 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457373 chr7:142457357 nonsynonymous SNV 0.007 1 5 hm5C_associated_SNPs_30059 0 0 0 2 1 Cytosol 1 0.500231643903044 1 0.999536712193912 hm5C_site_30275 DeepMRMD:1;iRNA_m5C:0.999536712193912 30276 chr20 35219442 35219442 1 + G T LUSC 35219435 + 35219415 35219455 41 AAGGCCTCAGATGTGGCCCTCCCCCGTGGCAGCAGCCCCTC AAGGCCTCAGATGTGGCCCTCCCCCGTTGCAGCAGCCCCTC < 41bp 1 0.166345278691684 1 0.0641975402832031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGIF2 ENSG00000118707 CDS Human protein_coding chr20:35219435 chr20:35219442 nonsynonymous SNV 0.997 0 28 hm5C_associated_SNPs_30060 0 0 1 0 0 Nucleus 1 0.500231643921104 1 0.999536712157791 hm5C_site_30276 DeepMRMD:1;iRNA_m5C:0.999536712157791 30277 chr20 35219442 35219442 1 + G T LUSC 35219436 + 35219416 35219456 41 AGGCCTCAGATGTGGCCCTCCCCCGTGGCAGCAGCCCCTCA AGGCCTCAGATGTGGCCCTCCCCCGTTGCAGCAGCCCCTCA < 41bp 1 0.382502680778238 1 0.398815095424652 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGIF2 ENSG00000118707 CDS Human protein_coding chr20:35219436 chr20:35219442 nonsynonymous SNV 0.997 0 27 hm5C_associated_SNPs_30061 0 0 1 0 0 Nucleus 1 0.500231643896156 1 0.999536712207688 hm5C_site_30277 DeepMRMD:1;iRNA_m5C:0.999536712207688 30278 chr22 50882466 50882466 1 + G A LUSC 50882468 + 50882448 50882488 41 CTCTTCTGCACTGGCCGTGGCGGTCCCCCTAGGGCCCATCA CTCTTCTGCACTGGCCGTAGCGGTCCCCCTAGGGCCCATCA < 41bp 1 0.266030351983998 1 0.375464290380478 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50882468 chr22:50882466 synonymous SNV . 0 19 hm5C_associated_SNPs_30063 0 0 1 0 1 Ribosome 1 0.500231643921287 1 0.999536712157426 hm5C_site_30278 DeepMRMD:1;iRNA_m5C:0.999536712157426 30279 chr7 101837153 101837153 1 + G A LUSC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCGTCCAAGGGCGCTGGGACA < 41bp 1 0.0197239484229832 1 0.388153910636902 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837153 nonsynonymous SNV 0.725 2 27 hm5C_associated_SNPs_30064 0 0 1 0 2 Exosome 1 0.500231643921056 1 0.999536712157889 hm5C_site_30279 DeepMRMD:1;iRNA_m5C:0.999536712157889 30280 chr7 101837153 101837153 1 + G A LUSC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCGTCCAAGGGCGCTGGGACAC < 41bp 1 0.0650381216391876 1 0.481105208396912 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837153 nonsynonymous SNV 0.725 2 26 hm5C_associated_SNPs_30065 0 0 1 0 2 Exosome 1 0.500231643910163 1 0.999536712179675 hm5C_site_30280 DeepMRMD:1;iRNA_m5C:0.999536712179675 30281 chrX 123224561 123224561 1 + C T LUSC 123224558 + 123224538 123224578 41 AGATTACGGCCTGAGGATAGCTTCATGAGTGTTTATCCAAT AGATTACGGCCTGAGGATAGCTTTATGAGTGTTTATCCAAT < 41bp 1 0.269743452542122 1 0.0715199708938599 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123224558 chrX:123224561 synonymous SNV . 0 24 hm5C_associated_SNPs_30066 0 0 1 0 1 Nucleus 1 0.500231643930171 1 0.999536712139658 hm5C_site_30281 DeepMRMD:1;iRNA_m5C:0.999536712139658 30282 chr20 42169587 42169587 1 + G C LUSC 42169585 + 42169565 42169605 41 CCCCACCAGGCAAGAATAGTCAGAGTGACCCATGTATCTGG CCCCACCAGGCAAGAATAGTCACAGTGACCCATGTATCTGG < 41bp 1 0.628901077022689 1 0.66681706905365 experiment 0.742197845954621 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42169585 chr20:42169587 nonsynonymous SNV 0.160 0 23 hm5C_associated_SNPs_30067 0 0 1 0 1 Nucleus 1 0.500231643921093 0.6663658618927 0.999536712157815 hm5C_site_30282 DeepMRMD:0.6663658618927;iRNA_m5C:0.999536712157815 30283 chr16 601555 601555 1 + G A LUSC 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACAGCAGC < 41bp 1 0.0250076417561774 1 0.0636005997657776 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601555 nonsynonymous SNV 0.987 5 36 hm5C_associated_SNPs_30068 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30283 DeepMRMD:1;iRNA_m5C:0.999536712157815 30284 chr16 601555 601555 1 + G A LUSC 601547 + 601527 601567 41 AAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG AAACCCGTGGGGCCGTTTCTCCTGGAACAGCAGCTGGTCCG < 41bp 1 0.461297776270409 1 0.928219199180603 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601547 chr16:601555 nonsynonymous SNV 0.987 5 29 hm5C_associated_SNPs_30069 0 0 1 0 1 chromatin 1 0.500231642646182 0.143561601638794 0.999536714707636 hm5C_site_30284 DeepMRMD:0.143561601638794;iRNA_m5C:0.999536714707636 30285 chr22 42042981 42042981 1 + A C LUSC 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCTCTCAAGCCTCCTCCCATAAAGCTCTATCGG < 41bp 1 0.0840077204783094 1 0.197765409946442 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042981 synonymous SNV . 0 26 hm5C_associated_SNPs_30070 0 0 1 0 1 Cytosol 1 0.500231642084559 1 0.999536715830882 hm5C_site_30285 DeepMRMD:1;iRNA_m5C:0.999536715830882 30286 chr8 77619827 77619827 1 + A T LUSC 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCCGGCTTGCCAGTGGTCAGCTTATGGGTGATGACCTGTCC < 41bp 1 0.105811713623167 1 0.0982119739055634 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619827 synonymous SNV . 0 23 hm5C_associated_SNPs_30071 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30286 DeepMRMD:1;iRNA_m5C:0.999536712157815 30287 chr12 100732613 100732613 1 + A G LUSC 100732627 + 100732607 100732647 41 ACTTCAATGCTTTGAGTGTTCCTCCTGCTGGTGCAAAGCAG ACTTCAGTGCTTTGAGTGTTCCTCCTGCTGGTGCAAAGCAG < 41bp 1 0.191148127110263 1 0.124571114778519 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732627 chr12:100732613 nonsynonymous SNV 0.805 0 7 hm5C_associated_SNPs_30072 0 0 1 0 0 chromatin 1 0.500231415257679 1 0.999537169484642 hm5C_site_30287 DeepMRMD:1;iRNA_m5C:0.999537169484642 30288 chr12 100732613 100732613 1 + A G LUSC 100732630 + 100732610 100732650 41 TCAATGCTTTGAGTGTTCCTCCTGCTGGTGCAAAGCAGACC TCAGTGCTTTGAGTGTTCCTCCTGCTGGTGCAAAGCAGACC < 41bp 1 0.181581817630512 1 0.231181681156158 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732630 chr12:100732613 nonsynonymous SNV 0.805 0 4 hm5C_associated_SNPs_30073 0 0 1 0 0 chromatin 1 0.50023164391573 1 0.999536712168539 hm5C_site_30288 DeepMRMD:1;iRNA_m5C:0.999536712168539 30289 chr12 100732613 100732613 1 + A G LUSC 100732631 + 100732611 100732651 41 CAATGCTTTGAGTGTTCCTCCTGCTGGTGCAAAGCAGACCC CAGTGCTTTGAGTGTTCCTCCTGCTGGTGCAAAGCAGACCC < 41bp 1 0.656351502646988 1 0.427645266056061 experiment 0.687296994706023 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732631 chr12:100732613 nonsynonymous SNV 0.805 0 3 hm5C_associated_SNPs_30074 0 0 1 0 0 chromatin 1 0.50023164392132 1 0.999536712157361 hm5C_site_30289 DeepMRMD:1;iRNA_m5C:0.999536712157361 30290 chr22 39078929 39078929 1 + C G LUSC 39078940 + 39078920 39078960 41 CTTTATGATCCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA CTTTATGATGCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA < 41bp 1 0.298018743355741 1 0.137838870286942 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078940 chr22:39078929 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_30075 0 0 1 0 2 Ribosome 1 0.500231643914897 1 0.999536712170207 hm5C_site_30290 DeepMRMD:1;iRNA_m5C:0.999536712170207 30291 chr3 158519922 158519922 1 + C G LUSC 158519940 + 158519920 158519960 41 CTCTCCGTCTCCTGCGGGCGCAATGGAGGAGGAGGATGAGG CTGTCCGTCTCCTGCGGGCGCAATGGAGGAGGAGGATGAGG < 41bp 1 0.474803138263323 1 0.427799016237259 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158519940 chr3:158519922 nonsynonymous SNV 0.001 0 3 hm5C_associated_SNPs_30076 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30291 DeepMRMD:1;iRNA_m5C:0.999536712157815 30292 chr3 39431976 39431976 1 + G T LUSC 39431995 + 39431975 39432015 41 GGCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG GTCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG < 41bp 1 0.281440385781648 1 0.11727699637413 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431995 chr3:39431976 nonsynonymous SNV 0.996 5 2 hm5C_associated_SNPs_30077 0 0 1 0 2 Ribosome 1 0.500231643922126 1 0.999536712155747 hm5C_site_30292 DeepMRMD:1;iRNA_m5C:0.999536712155747 30293 chr3 134851697 134851697 1 + G A LUSC 134851688 + 134851668 134851708 41 CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCC CATCTGCAAAAAGTGCCGGGCAGACCGCCAGAGCTGCTCCC < 41bp 1 0.107298622087204 1 0.48856657743454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851688 chr3:134851697 nonsynonymous SNV 0.998 3 30 hm5C_associated_SNPs_30078 0 0 0 0 0 exosome 1 0.500231643921086 1 0.999536712157828 hm5C_site_30293 DeepMRMD:1;iRNA_m5C:0.999536712157828 30294 chr1 154947241 154947241 1 + A G LUSC 154947230 + 154947210 154947250 41 AACCGAGCGATCATGTCGCACAAACAAATTTACTATTCGGA AACCGAGCGATCATGTCGCACAAACAAATTTGCTATTCGGA < 41bp 1 0.0905730069349028 1 0.128744810819626 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS1B ENSG00000173207 CDS Human protein_coding chr1:154947230 chr1:154947241 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_30079 0 0 1 0 1 Ribosome 1 0.500231649240905 1 0.999536701518191 hm5C_site_30294 DeepMRMD:1;iRNA_m5C:0.999536701518191 30295 chr8 145692682 145692682 1 + G T LUSC 145692679 + 145692659 145692699 41 GGGGGAGGCAGGCCCTGCTCCAGGGGACTCAGCCAGCCCCT GGGGGAGGCAGGCCCTGCTCCAGTGGACTCAGCCAGCCCCT < 41bp 1 0.634799251770495 1 0.877166867256165 experiment 0.73040149645901 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145692679 chr8:145692682 nonsynonymous SNV 0.966 2 24 hm5C_associated_SNPs_30080 0 0 0 0 2 nucleolus 1 0.500231643921092 0.24566626548767 0.999536712157815 hm5C_site_30295 DeepMRMD:0.24566626548767;iRNA_m5C:0.999536712157815 30296 chr5 148712284 148712284 1 + G T LUSC 148712291 + 148712271 148712311 41 GGCTCTGGAAGAAGCCGTGGCCACCCTGGAAGCTCAGTGTC GGCTCTGGAAGAATCCGTGGCCACCCTGGAAGCTCAGTGTC < 41bp 1 0.0878782811161228 1 0.0289046466350555 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148712291 chr5:148712284 nonsynonymous SNV 0.994 1 14 hm5C_associated_SNPs_30081 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30296 DeepMRMD:1;iRNA_m5C:0.999536712157815 30297 chr20 2635176 2635176 1 + G C LUSC 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTACG < 41bp 1 0.570498156866297 1 0.331920742988586 experiment 0.859003686267406 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635176 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_30083 0 0 1 4 1 Cytosol 1 0.500231643921136 1 0.999536712157727 hm5C_site_30297 DeepMRMD:1;iRNA_m5C:0.999536712157727 30298 chr20 2635176 2635176 1 + G C LUSC 2635184 + 2635164 2635204 41 CAGGAGGAGTTAGGGTACAACTGCCAGACTGGAGGAGTCAT CAGGAGGAGTTACGGTACAACTGCCAGACTGGAGGAGTCAT < 41bp 1 0.411798929874402 1 0.105524927377701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635184 chr20:2635176 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_30084 0 0 1 4 1 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_30298 DeepMRMD:1;iRNA_m5C:0.999536712157812 30299 chr12 863246 863246 1 + T A LUSC 863266 + 863246 863286 41 TGGGGAGCAAAGAGGAGCCGCCGCCGGCGAGAAGTGGCAGC AGGGGAGCAAAGAGGAGCCGCCGCCGGCGAGAAGTGGCAGC < 41bp 1 0.111333019185567 1 0.23948061466217 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WNK1 ENSG00000060237 CDS Human protein_coding chr12:863266 chr12:863246 nonsynonymous SNV 0.678 0 1 hm5C_associated_SNPs_30085 0 0 1 0 0 Ribosome 1 0.500231643921153 1 0.999536712157693 hm5C_site_30299 DeepMRMD:1;iRNA_m5C:0.999536712157693 30300 chr14 21553028 21553028 1 + G T LUSC 21553017 + 21552997 21553037 41 TTCTCTTCGAGCATCTCCTCCTGTTCAGCAAGCTCAAGGGC TTCTCTTCGAGCATCTCCTCCTGTTCAGCAATCTCAAGGGC < 41bp 1 0.130319655435112 1 0.13311642408371 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21553017 chr14:21553028 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_30086 0 0 1 0 1 Cytosol 1 0.500231643921282 1 0.999536712157435 hm5C_site_30300 DeepMRMD:1;iRNA_m5C:0.999536712157435 30301 chr14 21553029 21553029 1 + C A LUSC 21553017 + 21552997 21553037 41 TTCTCTTCGAGCATCTCCTCCTGTTCAGCAAGCTCAAGGGC TTCTCTTCGAGCATCTCCTCCTGTTCAGCAAGATCAAGGGC < 41bp 1 0.106198768060533 1 0.134794294834137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21553017 chr14:21553029 nonsynonymous SNV 0.999 0 33 hm5C_associated_SNPs_30087 0 0 1 0 1 Cytosol 1 0.500231643921272 1 0.999536712157456 hm5C_site_30301 DeepMRMD:1;iRNA_m5C:0.999536712157456 30302 chr12 62931458 62931458 1 + C A LUSC 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATAATGGC < 41bp 1 0.12968318831979 1 0.0507639944553375 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931458 stopgain 0.997 1 36 hm5C_associated_SNPs_30088 0 0 1 0 2 Nucleus 1 0.500231643897601 1 0.999536712204798 hm5C_site_30302 DeepMRMD:1;iRNA_m5C:0.999536712204798 30303 chr4 5733346 5733346 1 + C A LUSC 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCAGCCGCACCTTCCTACGGGTGAACGCCTTCCC < 41bp 1 0.0343286881840291 1 0.168559163808823 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733346 synonymous SNV . 0 24 hm5C_associated_SNPs_30089 0 0 1 0 1 Nucleus 1 0.500231643792458 1 0.999536712415085 hm5C_site_30303 DeepMRMD:1;iRNA_m5C:0.999536712415085 30304 chr1 240492695 240492695 1 + T A LUSC 240492713 + 240492693 240492733 41 CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC CCAGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC < 41bp 1 0.494285600324299 1 0.804774641990662 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FMN2 ENSG00000155816 CDS Human protein_coding chr1:240492713 chr1:240492695 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_30090 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643922931 0.390450716018676 0.999536712154137 hm5C_site_30304 DeepMRMD:0.390450716018676;iRNA_m5C:0.999536712154137 30305 chr17 35310518 35310518 1 + G T LUSC 35310535 + 35310515 35310555 41 GATGATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTC GATTATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTC < 41bp 1 0.2565810474511 1 0.079436331987381 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control AATF ENSG00000108270 CDS Human other chr17:35310535 chr17:35310518 nonsynonymous SNV 0.225 3 4 hm5C_associated_SNPs_30091 0 0 1 1 1 chromatin 1 0.500247723025837 1 0.999504553948326 hm5C_site_30305 DeepMRMD:1;iRNA_m5C:0.999504553948326 30306 chr17 21731036 21731036 1 + C A LUSC 21731040 + 21731020 21731060 41 GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT GATAAAGAAGGCATCCACCCCGACCAGCAGAGGCTCATCTT < 41bp 1 0.309045128666321 1 0.437979251146317 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731040 chr17:21731036 nonsynonymous SNV 0.555 1 17 hm5C_associated_SNPs_30093 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30306 DeepMRMD:1;iRNA_m5C:0.999536712157815 30307 chr1 183101650 183101650 1 + G A LUSC 183101645 + 183101625 183101665 41 GGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGCTTA GGCAGGAGAAAATCAAACAGCATTTAAGATTGAAGAGCTTA < 41bp 1 0.0197384850546173 1 0.117018401622772 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101645 chr1:183101650 nonsynonymous SNV 0.998 1 26 hm5C_associated_SNPs_30095 0 0 1 0 1 Ribosome 1 0.500231643920973 1 0.999536712158055 hm5C_site_30307 DeepMRMD:1;iRNA_m5C:0.999536712158055 30308 chr14 64990087 64990087 1 + G A LUSC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGAGCGTCAGTTGCAACTGCACAATGATATGCACAAAGGC < 41bp 1 0.636555537515183 1 0.591628432273865 experiment 0.726888924969634 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990087 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_30096 0 0 1 0 1 Cytosol 1 0.500450133143789 0.81674313545227 0.999099733712421 hm5C_site_30308 DeepMRMD:0.81674313545227;iRNA_m5C:0.999099733712421 30309 chr22 42262852 42262852 1 + A G LUSC 42262872 + 42262852 42262892 41 AGTAATCAAGTGGGAGAGTTCCCTGACTTGTTTTCAGAACA GGTAATCAAGTGGGAGAGTTCCCTGACTTGTTTTCAGAACA < 41bp 1 0.0918231842026682 1 0.259680479764938 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42262872 chr22:42262852 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_30097 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30309 DeepMRMD:1;iRNA_m5C:0.999536712157815 30310 chr1 110466216 110466216 1 + C T LUSC 110466215 + 110466195 110466235 41 CCCCAAGGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGG CCCCAAGGGACAGAGCTTTCCTCCTCCAGGCCAGGAGGGGG < 41bp 1 0.371737464223384 1 0.555439591407776 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466215 chr1:110466216 nonsynonymous SNV 0.131 0 22 hm5C_associated_SNPs_30098 0 0 1 0 0 chromatin 1 0.500231643921092 0.889120817184448 0.999536712157815 hm5C_site_30310 DeepMRMD:0.889120817184448;iRNA_m5C:0.999536712157815 30311 chr1 110466216 110466216 1 + C T LUSC 110466220 + 110466200 110466240 41 AGGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGCAGCA AGGGACAGAGCTTTCCTCCTCCAGGCCAGGAGGGGGCAGCA < 41bp 1 0.368587929444461 1 0.904610216617584 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466220 chr1:110466216 nonsynonymous SNV 0.131 0 17 hm5C_associated_SNPs_30099 0 0 1 0 0 chromatin 1 0.500231643921092 0.190779566764832 0.999536712157815 hm5C_site_30311 DeepMRMD:0.190779566764832;iRNA_m5C:0.999536712157815 30312 chr1 110466216 110466216 1 + C T LUSC 110466221 + 110466201 110466241 41 GGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGCAGCAT GGGACAGAGCTTTCCTCCTCCAGGCCAGGAGGGGGCAGCAT < 41bp 1 0.457891750056424 1 0.932490587234497 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466221 chr1:110466216 nonsynonymous SNV 0.131 0 16 hm5C_associated_SNPs_30100 0 0 1 0 0 chromatin 1 0.500231643921089 0.135018825531006 0.999536712157822 hm5C_site_30312 DeepMRMD:0.135018825531006;iRNA_m5C:0.999536712157822 30313 chr12 3047309 3047309 1 + G A LUSC 3047297 + 3047277 3047317 41 CAGAACCATGACAGTTTGCTCTCAAGGTGGCAGAACAGAAC CAGAACCATGACAGTTTGCTCTCAAGGTGGCAAAACAGAAC < 41bp 1 0.57112218867544 1 0.699701488018036 experiment 0.85775562264912 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TULP3 ENSG00000078246 CDS Human protein_coding chr12:3047297 chr12:3047309 synonymous SNV . 0 33 hm5C_associated_SNPs_30102 0 0 1 0 1 Cytosol 1 0.500231540628225 0.600597023963928 0.99953691874355 hm5C_site_30313 DeepMRMD:0.600597023963928;iRNA_m5C:0.99953691874355 30314 chr3 179478921 179478921 1 + C T LUSC 179478903 + 179478883 179478923 41 CCTGTTGTGCTCTGTAGCATCAGACATCGATGAGTCATCAG CCTGTTGTGCTCTGTAGCATCAGACATCGATGAGTCATTAG < 41bp 1 0.293018132816359 1 0.548521280288696 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179478903 chr3:179478921 nonsynonymous SNV 0.842 1 39 hm5C_associated_SNPs_30103 0 0 1 0 1 Ribosome 1 0.500231643707655 0.902957439422608 0.99953671258469 hm5C_site_30314 DeepMRMD:0.902957439422608;iRNA_m5C:0.99953671258469 30315 chr13 28752068 28752068 1 + G T LUSC 28752051 + 28752031 28752071 41 TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACTAAA < 41bp 1 0.554163887159756 1 0.150904089212418 experiment 0.891672225680488 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752051 chr13:28752068 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_30104 0 0 1 0 2 Ribosome 1 0.500231643653219 1 0.999536712693561 hm5C_site_30315 DeepMRMD:1;iRNA_m5C:0.999536712693561 30316 chr13 28752068 28752068 1 + G T LUSC 28752054 + 28752034 28752074 41 AATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGT AATGACTTTGGTGCCCTCAACATCTCTCAGAGACTAAAGGT < 41bp 1 0.133713520370696 1 0.223930299282074 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752054 chr13:28752068 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_30105 0 0 1 0 2 Ribosome 1 0.50023164063627 1 0.999536718727459 hm5C_site_30316 DeepMRMD:1;iRNA_m5C:0.999536718727459 30317 chr13 28752068 28752068 1 + G T LUSC 28752057 + 28752037 28752077 41 GACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGG GACTTTGGTGCCCTCAACATCTCTCAGAGACTAAAGGTAGG < 41bp 1 0.137799040017269 1 0.265989243984222 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752057 chr13:28752068 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_30106 0 0 1 0 2 Ribosome 1 0.500231643921078 1 0.999536712157844 hm5C_site_30317 DeepMRMD:1;iRNA_m5C:0.999536712157844 30318 chr13 28752068 28752068 1 + G T LUSC 28752059 + 28752039 28752079 41 CTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTG CTTTGGTGCCCTCAACATCTCTCAGAGACTAAAGGTAGGTG < 41bp 1 0.47368409519063 1 0.117829352617264 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752059 chr13:28752068 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_30107 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30318 DeepMRMD:1;iRNA_m5C:0.999536712157815 30319 chr13 28752068 28752068 1 + G T LUSC 28752061 + 28752041 28752081 41 TTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTGAA TTGGTGCCCTCAACATCTCTCAGAGACTAAAGGTAGGTGAA < 41bp 1 0.441966755753525 1 0.694764614105225 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752061 chr13:28752068 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_30108 0 0 1 0 2 Ribosome 1 0.500231643921092 0.61047077178955 0.999536712157815 hm5C_site_30319 DeepMRMD:0.61047077178955;iRNA_m5C:0.999536712157815 30320 chr6 25652645 25652645 1 + G A LUSC 25652637 + 25652617 25652657 41 TTCGTCGTCAACACCATGGACAGCTCCCGGGAACCGACTCT TTCGTCGTCAACACCATGGACAGCTCCCAGGAACCGACTCT < 41bp 1 0.397652694982442 1 0.345628350973129 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCGN ENSG00000079689 CDS Human protein_coding chr6:25652637 chr6:25652645 nonsynonymous SNV 0.116 2 29 hm5C_associated_SNPs_30109 0 0 0 0 1 cytosol 1 0.500230202300829 1 0.999539595398343 hm5C_site_30320 DeepMRMD:1;iRNA_m5C:0.999539595398343 30321 chr11 57373944 57373944 1 + C G LUSC 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTGA < 41bp 1 0.0218494428089141 1 0.0596957802772522 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373944 stopgain 0.084 1 40 hm5C_associated_SNPs_30110 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30321 DeepMRMD:1;iRNA_m5C:0.999536712157815 30322 chr11 57373944 57373944 1 + C G LUSC 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTGAG < 41bp 1 0.00969193377576405 1 0.105742216110229 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373944 stopgain 0.084 1 39 hm5C_associated_SNPs_30111 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643919866 1 0.999536712160268 hm5C_site_30322 DeepMRMD:1;iRNA_m5C:0.999536712160268 30323 chr11 57373944 57373944 1 + C G LUSC 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTGAGT < 41bp 1 0.014362216773692 1 0.0618423819541931 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373944 stopgain 0.084 1 38 hm5C_associated_SNPs_30112 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921225 1 0.99953671215755 hm5C_site_30323 DeepMRMD:1;iRNA_m5C:0.99953671215755 30324 chr11 57373944 57373944 1 + C G LUSC 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAGAATGGAACCCTTTCACTTCAAAAACTGAGTTATAAA < 41bp 1 0.514132660773494 1 0.363282918930054 experiment 0.971734678453013 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373944 stopgain 0.084 1 32 hm5C_associated_SNPs_30113 0 0 0 0 2 Endoplasmic reticulum 1 0.500231632656576 1 0.999536734686849 hm5C_site_30324 DeepMRMD:1;iRNA_m5C:0.999536734686849 30325 chr22 51143493 51143493 1 + G T LUSC 51143513 + 51143493 51143533 41 GAAGCCAGAAGAGGACGGGGCTCGGCGCAGAGGTGAGGGGT TAAGCCAGAAGAGGACGGGGCTCGGCGCAGAGGTGAGGGGT < 41bp 1 0.272800669321574 1 0.713770389556885 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143513 chr22:51143493 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_30114 0 0 1 0 1 cytosol 1 0.500231643921092 0.57245922088623 0.999536712157815 hm5C_site_30325 DeepMRMD:0.57245922088623;iRNA_m5C:0.999536712157815 30326 chr12 52379132 52379132 1 + G T LUSC 52379127 + 52379107 52379147 41 CCGAATCAGAGGGTGGGGACCAAACGGTAGGAGGGCCTGGG CCGAATCAGAGGGTGGGGACCAAACTGTAGGAGGGCCTGGG < 41bp 1 0.246528429300564 1 0.379218012094498 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52379127 chr12:52379132 nonsynonymous SNV 0.996 4 26 hm5C_associated_SNPs_30115 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921219 1 0.999536712157561 hm5C_site_30326 DeepMRMD:1;iRNA_m5C:0.999536712157561 30327 chr14 23239049 23239049 1 + G C LUSC 23239030 + 23239010 23239050 41 TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCACC < 41bp 1 0.297524261994005 1 0.0249118804931641 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239030 chr14:23239049 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_30116 0 0 1 0 1 Cytosol 1 0.500231643917853 1 0.999536712164295 hm5C_site_30327 DeepMRMD:1;iRNA_m5C:0.999536712164295 30328 chr1 110466223 110466223 1 + G T LUSC 110466215 + 110466195 110466235 41 CCCCAAGGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGG CCCCAAGGGACAGAGCTTTCCCCCTCCATGCCAGGAGGGGG < 41bp 1 0.153993936719179 1 0.136896997690201 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466215 chr1:110466223 nonsynonymous SNV 0.180 1 29 hm5C_associated_SNPs_30117 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30328 DeepMRMD:1;iRNA_m5C:0.999536712157815 30329 chr1 110466223 110466223 1 + G T LUSC 110466216 + 110466196 110466236 41 CCCAAGGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGC CCCAAGGGACAGAGCTTTCCCCCTCCATGCCAGGAGGGGGC < 41bp 1 0.0862429202986393 1 0.179525882005692 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466216 chr1:110466223 nonsynonymous SNV 0.180 1 28 hm5C_associated_SNPs_30118 0 0 1 0 0 chromatin 1 0.500231559305304 1 0.999536881389391 hm5C_site_30329 DeepMRMD:1;iRNA_m5C:0.999536881389391 30330 chr1 110466223 110466223 1 + G T LUSC 110466220 + 110466200 110466240 41 AGGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGCAGCA AGGGACAGAGCTTTCCCCCTCCATGCCAGGAGGGGGCAGCA < 41bp 1 0.0811506910614126 1 0.711886882781982 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466220 chr1:110466223 nonsynonymous SNV 0.180 1 24 hm5C_associated_SNPs_30119 0 0 1 0 0 chromatin 1 0.500231643921092 0.576226234436036 0.999536712157815 hm5C_site_30330 DeepMRMD:0.576226234436036;iRNA_m5C:0.999536712157815 30331 chr1 110466223 110466223 1 + G T LUSC 110466221 + 110466201 110466241 41 GGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGCAGCAT GGGACAGAGCTTTCCCCCTCCATGCCAGGAGGGGGCAGCAT < 41bp 1 0.153147028343679 1 0.59412693977356 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466221 chr1:110466223 nonsynonymous SNV 0.180 1 23 hm5C_associated_SNPs_30120 0 0 1 0 0 chromatin 1 0.500231643921092 0.81174612045288 0.999536712157816 hm5C_site_30331 DeepMRMD:0.81174612045288;iRNA_m5C:0.999536712157816 30332 chrX 73046973 73046973 1 + T C LUSC 73046971 - 73046951 73046991 41 GACTGCAGTAAAACCCAGAACTCAAGTAGGGCAGAAGGTGG GACTGCAGTAAAACCCAGGACTCAAGTAGGGCAGAAGGTGG < 41bp 1 0.495545838746833 1 0.72087836265564 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046971 chrX:73046973 . . 0 19 hm5C_associated_SNPs_30121 0 0 1 0 0 unknown 1 0.50023164392109 0.55824327468872 0.99953671215782 hm5C_site_30332 DeepMRMD:0.55824327468872;iRNA_m5C:0.99953671215782 30333 chr1 112999425 112999425 1 + A T LUSC 112999436 + 112999416 112999456 41 TAAGCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACC TAAGCGTTTTTTGGGGTCATCAGCTAGCAGCCCTGGCTACC < 41bp 1 0.524421100929104 1 0.713918626308441 experiment 0.951157798141792 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999436 chr1:112999425 nonsynonymous SNV 0.135 3 10 hm5C_associated_SNPs_30122 0 0 0 0 0 Ribosome 1 0.500231643921092 0.572162747383118 0.999536712157815 hm5C_site_30333 DeepMRMD:0.572162747383118;iRNA_m5C:0.999536712157815 30334 chr1 112999425 112999425 1 + A T LUSC 112999439 + 112999419 112999459 41 GCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGT GCGTTTTTTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGT < 41bp 1 0.479190532901956 1 0.333507418632507 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999439 chr1:112999425 nonsynonymous SNV 0.135 3 7 hm5C_associated_SNPs_30123 0 0 0 0 0 Ribosome 1 0.500231643852806 1 0.999536712294387 hm5C_site_30334 DeepMRMD:1;iRNA_m5C:0.999536712294387 30335 chr8 133856422 133856422 1 + G A LUSC 133856405 + 133856385 133856425 41 TGGTCCTTTGGAGAAGAATCCAGCTGAAGGGAATACAGTAT TGGTCCTTTGGAGAAGAATCCAGCTGAAGGGAATACAATAT < 41bp 1 0.374809572016638 1 0.370831727981567 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133856405 chr8:133856422 nonsynonymous SNV 0.853 1 38 hm5C_associated_SNPs_30124 0 0 0 0 1 Nucleus 1 0.500231643909913 1 0.999536712180175 hm5C_site_30335 DeepMRMD:1;iRNA_m5C:0.999536712180175 30336 chrX 47101575 47101575 1 + G T LUSC 47101578 + 47101558 47101598 41 CAAGTCCACGCTGGTGTGCCCCGATTGTGGCAATGTATCTG CAAGTCCACGCTGGTGTTCCCCGATTGTGGCAATGTATCTG < 41bp 1 0.196858524106626 1 0.158724397420883 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47101578 chrX:47101575 nonsynonymous SNV 0.979 4 18 hm5C_associated_SNPs_30125 0 0 1 0 1 cytosol 1 0.500231644869808 1 0.999536710260385 hm5C_site_30336 DeepMRMD:1;iRNA_m5C:0.999536710260385 30337 chr16 68390996 68390996 1 + T A LUSC 68390977 + 68390957 68390997 41 GGGGGCTGCTGCTGGAACCCCCACTGCAAGCAGGCCGTCTA GGGGGCTGCTGCTGGAACCCCCACTGCAAGCAGGCCGTCAA < 41bp 1 0.222707480550984 1 0.404758721590042 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68390977 chr16:68390996 nonsynonymous SNV 0.983 4 40 hm5C_associated_SNPs_30126 0 0 1 0 1 Nucleus 1 0.500231666908801 1 0.999536666182397 hm5C_site_30337 DeepMRMD:1;iRNA_m5C:0.999536666182397 30338 chr16 68390996 68390996 1 + T A LUSC 68391008 + 68390988 68391028 41 AGGCCGTCTACTTCTTCAGCCCTGCCCCAGATCCCAGAGCA AGGCCGTCAACTTCTTCAGCCCTGCCCCAGATCCCAGAGCA < 41bp 1 0.069617018036553 1 0.0770450532436371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68391008 chr16:68390996 nonsynonymous SNV 0.983 4 9 hm5C_associated_SNPs_30127 0 0 1 0 1 Nucleus 1 0.500231643921191 1 0.999536712157618 hm5C_site_30338 DeepMRMD:1;iRNA_m5C:0.999536712157618 30339 chr17 28499605 28499605 1 + G T LUSC 28499607 + 28499587 28499627 41 GAAGCTGCTAAGAAGCAGGCCATGAAACAGGTAAGGTAGAA GAAGCTGCTAAGAAGCAGTCCATGAAACAGGTAAGGTAGAA < 41bp 1 0.547199383721512 1 0.0973784923553467 experiment 0.905601232556975 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28499607 chr17:28499605 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_30128 0 0 1 0 2 Cytosol 1 0.500231644078869 1 0.999536711842262 hm5C_site_30339 DeepMRMD:1;iRNA_m5C:0.999536711842262 30340 chr14 23778052 23778052 1 + G T LUSC 23778051 + 23778031 23778071 41 TTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGCGCG TTCACAGCTCTATACGGGGACTGGGCCCTGGAGGAGGCGCG < 41bp 1 0.583641789657754 1 0.14218533039093 experiment 0.832716420684493 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCL2L2 ENSG00000129473 CDS Human protein_coding chr14:23778051 chr14:23778052 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_30129 0 0 1 0 1 Cytosol 1 0.500231643920092 1 0.999536712159817 hm5C_site_30340 DeepMRMD:1;iRNA_m5C:0.999536712159817 30341 chr14 64445678 64445678 1 + G T LUSC 64445696 + 64445676 64445716 41 TGGAACATTAAATATGGGAGCAGAGAATCTGTGGAATTATT TGTAACATTAAATATGGGAGCAGAGAATCTGTGGAATTATT < 41bp 1 0.0855254400248518 1 0.495707511901855 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64445696 chr14:64445678 nonsynonymous SNV 0.996 5 3 hm5C_associated_SNPs_30130 0 0 0 0 1 Nucleus 1 0.500231643920729 1 0.999536712158541 hm5C_site_30341 DeepMRMD:1;iRNA_m5C:0.999536712158541 30342 chr16 2816018 2816018 1 + G A LUSC 2816031 + 2816011 2816051 41 CAGGAAAGTTCCCGGACCTCCTCTCGACGCCGAAGAGGCCG CAGGAAAATTCCCGGACCTCCTCTCGACGCCGAAGAGGCCG < 41bp 1 0.111919245099891 1 0.206553637981415 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816031 chr16:2816018 nonsynonymous SNV 0.998 1 8 hm5C_associated_SNPs_30131 0 0 1 0 0 Nucleus 1 0.500231643918087 1 0.999536712163826 hm5C_site_30342 DeepMRMD:1;iRNA_m5C:0.999536712163826 30343 chr5 122154695 122154695 1 + A G LUSC 122154694 + 122154674 122154714 41 TCAGAACTACTTAGTGACTACATTCGTCTTATTGCTGCAGT TCAGAACTACTTAGTGACTACGTTCGTCTTATTGCTGCAGT < 41bp 1 0.0596901013030074 1 0.0614858269691467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122154694 chr5:122154695 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_30132 0 0 1 0 1 Ribosome 1 0.500231644208015 1 0.999536711583971 hm5C_site_30343 DeepMRMD:1;iRNA_m5C:0.999536711583971 30344 chr7 76110003 76110003 1 + G T LUSC 76110000 + 76109980 76110020 41 CAACGTTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTT CAACGTTTTGGGCTTGGGAGCCTTGCCCACAGCATCCCCTT < 41bp 1 0.0440705508695325 1 0.0131611227989197 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110000 chr7:76110003 synonymous SNV . 0 24 hm5C_associated_SNPs_30133 0 0 0 0 1 Nucleus 1 0.500231646134917 1 0.999536707730165 hm5C_site_30344 DeepMRMD:1;iRNA_m5C:0.999536707730165 30345 chr7 76110003 76110003 1 + G T LUSC 76110001 + 76109981 76110021 41 AACGTTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTG AACGTTTTGGGCTTGGGAGCCTTGCCCACAGCATCCCCTTG < 41bp 1 0.184093576632643 1 0.118084967136383 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110001 chr7:76110003 synonymous SNV . 0 23 hm5C_associated_SNPs_30134 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_30345 DeepMRMD:1;iRNA_m5C:0.999536712157815 30346 chr7 76110003 76110003 1 + G T LUSC 76110005 + 76109985 76110025 41 TTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGCC TTTTGGGCTTGGGAGCCTTGCCCACAGCATCCCCTTGGGCC < 41bp 1 0.128750292354441 1 0.095976710319519 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110005 chr7:76110003 synonymous SNV . 0 19 hm5C_associated_SNPs_30135 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30346 DeepMRMD:1;iRNA_m5C:0.999536712157815 30347 chr7 76110003 76110003 1 + G T LUSC 76110006 + 76109986 76110026 41 TTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGCCA TTTGGGCTTGGGAGCCTTGCCCACAGCATCCCCTTGGGCCA < 41bp 1 0.580698341146371 1 0.554439306259155 experiment 0.838603317707258 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110006 chr7:76110003 synonymous SNV . 0 18 hm5C_associated_SNPs_30136 0 0 0 0 1 Nucleus 1 0.500231643921092 0.89112138748169 0.999536712157815 hm5C_site_30347 DeepMRMD:0.89112138748169;iRNA_m5C:0.999536712157815 30348 chr7 76110003 76110003 1 + G T LUSC 76110007 + 76109987 76110027 41 TTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGCCAG TTGGGCTTGGGAGCCTTGCCCACAGCATCCCCTTGGGCCAG < 41bp 1 0.587474144021798 1 0.656753659248352 experiment 0.825051711956403 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110007 chr7:76110003 synonymous SNV . 0 17 hm5C_associated_SNPs_30137 0 0 0 0 1 Nucleus 1 0.500231643921092 0.686492681503296 0.999536712157815 hm5C_site_30348 DeepMRMD:0.686492681503296;iRNA_m5C:0.999536712157815 30349 chr2 190531717 190531717 1 + A T LUSC 190531711 + 190531691 190531731 41 ACATGAAGGAAGTAATTCAGCAGTTCATTGATGTCCTGAGT ACATGAAGGAAGTAATTCAGCAGTTCTTTGATGTCCTGAGT < 41bp 1 0.439932476137755 1 0.268032491207123 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ASNSD1 ENSG00000138381 CDS Human protein_coding chr2:190531711 chr2:190531717 nonsynonymous SNV 0.917 3 27 hm5C_associated_SNPs_30138 0 0 1 0 0 chromatin 1 0.500231644141347 1 0.999536711717306 hm5C_site_30349 DeepMRMD:1;iRNA_m5C:0.999536711717306 30350 chr16 845779 845779 1 + T C LUSC 845778 + 845758 845798 41 GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC GCCGGGCCACGCCCCAGGCCCCGCTCCTCGATGCCCTCTGC < 41bp 1 0.200845013837425 1 0.107569813728333 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845778 chr16:845779 nonsynonymous SNV 0.013 4 22 hm5C_associated_SNPs_30139 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30350 DeepMRMD:1;iRNA_m5C:0.999536712157815 30351 chr7 106768716 106768716 1 + C A LUSC 106768707 + 106768687 106768727 41 AATAGGTTGCAAGAGGCTTGCAAAGACATCCTGCTGTTTAA AATAGGTTGCAAGAGGCTTGCAAAGACATACTGCTGTTTAA < 41bp 1 0.482717831020411 1 0.61196106672287 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106768707 chr7:106768716 synonymous SNV . 0 30 hm5C_associated_SNPs_30140 0 0 1 0 2 Ribosome 1 0.500231643898074 0.77607786655426 0.999536712203852 hm5C_site_30351 DeepMRMD:0.77607786655426;iRNA_m5C:0.999536712203852 30352 chr18 33289685 33289685 1 + G A LUSC 33289684 + 33289664 33289704 41 TTAGAGACTGCAATGGAAGTCGGTCCCAGCAGTGGCTTCTT TTAGAGACTGCAATGGAAGTCAGTCCCAGCAGTGGCTTCTT < 41bp 1 0.372543505597446 1 0.346643209457397 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT1 ENSG00000141429 CDS Human protein_coding chr18:33289684 chr18:33289685 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_30141 0 0 1 0 1 Endoplasmic reticulum 1 0.500231763229644 1 0.999536473540712 hm5C_site_30352 DeepMRMD:1;iRNA_m5C:0.999536473540712 30353 chr12 56346685 56346685 1 + C T LUSC 56346679 + 56346659 56346699 41 TTAGGTGCTACAGCTAAAGTCATCACCGACCCTGATATCCT TTAGGTGCTACAGCTAAAGTCATCACTGACCCTGATATCCT < 41bp 1 0.482471780552641 1 0.0746246576309204 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56346679 chr12:56346685 synonymous SNV . 0 27 hm5C_associated_SNPs_30142 0 0 0 0 0 Cytosol 1 0.50023164395488 1 0.99953671209024 hm5C_site_30353 DeepMRMD:1;iRNA_m5C:0.99953671209024 30354 chr3 127323794 127323794 1 + G A LUSC 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGAGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT < 41bp 1 0.660925362373379 1 0.614526689052582 experiment 0.678149275253243 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323794 synonymous SNV . 0 6 hm5C_associated_SNPs_30143 0 0 1 0 2 Cytosol 1 0.50023170765631 0.770946621894836 0.99953658468738 hm5C_site_30354 DeepMRMD:0.770946621894836;iRNA_m5C:0.99953658468738 30355 chr18 34289080 34289080 1 + C T LUSC 34289065 + 34289045 34289085 41 TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCGAATC TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCTGAATC < 41bp 1 0.546903962824887 1 0.80107307434082 experiment 0.906192074350226 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289065 chr18:34289080 synonymous SNV . 0 36 hm5C_associated_SNPs_30144 0 0 0 0 1 exosome 1 0.500231643933344 0.39785385131836 0.999536712133313 hm5C_site_30355 DeepMRMD:0.39785385131836;iRNA_m5C:0.999536712133313 30356 chr16 30990977 30990977 1 + G T LUSC 30990965 + 30990945 30990985 41 ACAGAGACATCGGACGAGGCCGAGCGCCCTAGGCCCCTGCT ACAGAGACATCGGACGAGGCCGAGCGCCCTAGTCCCCTGCT < 41bp 1 0.325409421054835 1 0.682577610015869 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30990965 chr16:30990977 nonsynonymous SNV 0.178 1 33 hm5C_associated_SNPs_30145 0 0 1 0 0 Cytosol 1 0.500231643893873 0.634844779968262 0.999536712212255 hm5C_site_30356 DeepMRMD:0.634844779968262;iRNA_m5C:0.999536712212255 30357 chr3 50005961 50005961 1 + A G LUSC 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGGTAAGT < 41bp 1 0.0886637739870157 1 0.201799333095551 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005961 nonsynonymous SNV 0.995 1 36 hm5C_associated_SNPs_30146 0 0 1 4 0 Nucleus 1 0.500231699064534 1 0.999536601870932 hm5C_site_30357 DeepMRMD:1;iRNA_m5C:0.999536601870932 30358 chr2 54856375 54856375 1 + G A LUSC 54856361 + 54856341 54856381 41 CAGTGGCCACTTTGAGCAGGCCATCAAGGAAGGCGAAGACA CAGTGGCCACTTTGAGCAGGCCATCAAGGAAGGCAAAGACA < 41bp 1 0.0141962086482776 1 0.0586946606636047 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54856361 chr2:54856375 nonsynonymous SNV 0.999 0 35 hm5C_associated_SNPs_30147 0 0 1 0 0 Nucleus 1 0.500231643917406 1 0.999536712165187 hm5C_site_30358 DeepMRMD:1;iRNA_m5C:0.999536712165187 30359 chr2 54856375 54856375 1 + G A LUSC 54856362 + 54856342 54856382 41 AGTGGCCACTTTGAGCAGGCCATCAAGGAAGGCGAAGACAT AGTGGCCACTTTGAGCAGGCCATCAAGGAAGGCAAAGACAT < 41bp 1 0.257615447260094 1 0.0509568452835083 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54856362 chr2:54856375 nonsynonymous SNV 0.999 0 34 hm5C_associated_SNPs_30148 0 0 1 0 0 Nucleus 1 0.500231621547028 1 0.999536756905945 hm5C_site_30359 DeepMRMD:1;iRNA_m5C:0.999536756905945 30360 chr2 54856375 54856375 1 + G A LUSC 54856365 + 54856345 54856385 41 GGCCACTTTGAGCAGGCCATCAAGGAAGGCGAAGACATGAT GGCCACTTTGAGCAGGCCATCAAGGAAGGCAAAGACATGAT < 41bp 1 0.614733177236991 1 0.770099759101868 experiment 0.770533645526017 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54856365 chr2:54856375 nonsynonymous SNV 0.999 0 31 hm5C_associated_SNPs_30149 0 0 1 0 0 Nucleus 1 0.500231643911698 0.459800481796264 0.999536712176603 hm5C_site_30360 DeepMRMD:0.459800481796264;iRNA_m5C:0.999536712176603 30361 chr11 64884075 64884075 1 + C G LUSC 64884085 - 64884065 64884105 41 CAGTTCCTCCTGGCCTGGACCAACGAAAATGAGGCGGCCCT CAGTTCCTCCTGGCCTGGACCAACGAAAATCAGGCGGCCCT < 41bp 1 0.469799435867289 1 0.528337955474854 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNHIT2 ENSG00000174276 CDS Human protein_coding chr11:64884085 chr11:64884075 nonsynonymous SNV 0.974 2 31 hm5C_associated_SNPs_30150 0 0 0 0 0 Ribosome 1 0.500231643921096 0.943324089050292 0.999536712157808 hm5C_site_30361 DeepMRMD:0.943324089050292;iRNA_m5C:0.999536712157808 30362 chr20 37154652 37154652 1 + G T LUSC 37154672 + 37154652 37154692 41 GAAACGGACCCCAACAACACCCAAATGATATTAGGTTTGTA TAAACGGACCCCAACAACACCCAAATGATATTAGGTTTGTA < 41bp 1 0.0778488787035886 1 0.231358081102371 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37154672 chr20:37154652 stopgain 0.990 1 1 hm5C_associated_SNPs_30151 0 0 1 0 1 Nucleus 1 0.500231952436499 1 0.999536095127001 hm5C_site_30362 DeepMRMD:1;iRNA_m5C:0.999536095127001 30363 chr10 94822674 94822674 1 + G A LUSC 94822663 + 94822643 94822683 41 GGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCCGG GGTTGCGGCTGGACGAGGCGCAGTGCGCCACACTGGCCCGG < 41bp 1 0.698542686502018 1 0.507414162158966 experiment 0.602914626995964 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822663 chr10:94822674 synonymous SNV . 0 32 hm5C_associated_SNPs_30153 0 0 0 0 1 exosome 1 0.500231643890801 0.985171675682068 0.999536712218399 hm5C_site_30363 DeepMRMD:0.985171675682068;iRNA_m5C:0.999536712218399 30364 chr2 71795349 71795349 1 + G C LUSC 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGGAACTGGGGCACAACCGGCCTCACCTACCCCAAGTTTTC < 41bp 1 0.11038335641653 1 0.0706162750720978 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795349 synonymous SNV . 0 18 hm5C_associated_SNPs_30154 0 0 0 0 1 Nucleus 1 0.500231643921095 1 0.999536712157811 hm5C_site_30364 DeepMRMD:1;iRNA_m5C:0.999536712157811 30365 chr3 183885468 183885468 1 + G T LUSC 183885453 + 183885433 183885473 41 CCTGAATCAGGGTTGGAGGTCCGTGACCGCATGTGGCTCAA CCTGAATCAGGGTTGGAGGTCCGTGACCGCATGTGTCTCAA < 41bp 1 0.249596400164568 1 0.183283507823944 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183885453 chr3:183885468 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_30155 0 0 1 0 1 Cytosol 1 0.500231642880846 1 0.999536714238308 hm5C_site_30365 DeepMRMD:1;iRNA_m5C:0.999536714238308 30366 chr2 233671354 233671354 1 + C T LUSC 233671347 + 233671327 233671367 41 GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATG GGGTTCCCTTTTCTCCAGGTCCAGCTCTCCCTCCTCATATG < 41bp 1 0.11822191384846 1 0.0260702669620514 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671347 chr2:233671354 nonsynonymous SNV 0.979 3 28 hm5C_associated_SNPs_30156 0 0 1 0 1 Nucleus 1 0.500231643921055 1 0.99953671215789 hm5C_site_30366 DeepMRMD:1;iRNA_m5C:0.99953671215789 30367 chr2 233671354 233671354 1 + C T LUSC 233671348 + 233671328 233671368 41 GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGG GGTTCCCTTTTCTCCAGGTCCAGCTCTCCCTCCTCATATGG < 41bp 1 0.231755512287355 1 0.0712853074073792 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671348 chr2:233671354 nonsynonymous SNV 0.979 3 27 hm5C_associated_SNPs_30157 0 0 1 0 1 Nucleus 1 0.500231630992278 1 0.999536738015445 hm5C_site_30367 DeepMRMD:1;iRNA_m5C:0.999536738015445 30368 chr2 233671354 233671354 1 + C T LUSC 233671351 + 233671331 233671371 41 TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAA TCCCTTTTCTCCAGGTCCAGCTCTCCCTCCTCATATGGTAA < 41bp 1 0.0393905500503518 1 0.258984923362732 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671351 chr2:233671354 nonsynonymous SNV 0.979 3 24 hm5C_associated_SNPs_30158 0 0 1 0 1 Nucleus 1 0.500231643917981 1 0.999536712164037 hm5C_site_30368 DeepMRMD:1;iRNA_m5C:0.999536712164037 30369 chr2 233671354 233671354 1 + C T LUSC 233671355 + 233671335 233671375 41 TTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTAC TTTTCTCCAGGTCCAGCTCTCCCTCCTCATATGGTAAGTAC < 41bp 1 0.0683252152448919 1 0.102609604597092 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671355 chr2:233671354 nonsynonymous SNV 0.979 3 20 hm5C_associated_SNPs_30159 0 0 1 0 1 Nucleus 1 0.500231640280749 1 0.999536719438502 hm5C_site_30369 DeepMRMD:1;iRNA_m5C:0.999536719438502 30370 chr2 233671354 233671354 1 + C T LUSC 233671356 + 233671336 233671376 41 TTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACC TTTCTCCAGGTCCAGCTCTCCCTCCTCATATGGTAAGTACC < 41bp 1 0.0236253508084036 1 0.0485194325447083 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671356 chr2:233671354 nonsynonymous SNV 0.979 3 19 hm5C_associated_SNPs_30160 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30370 DeepMRMD:1;iRNA_m5C:0.999536712157815 30371 chr2 233671354 233671354 1 + C T LUSC 233671357 + 233671337 233671377 41 TTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACCT TTCTCCAGGTCCAGCTCTCCCTCCTCATATGGTAAGTACCT < 41bp 1 0.300746118213707 1 0.06482794880867 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671357 chr2:233671354 nonsynonymous SNV 0.979 3 18 hm5C_associated_SNPs_30161 0 0 1 0 1 Nucleus 1 0.500231675188045 1 0.999536649623909 hm5C_site_30371 DeepMRMD:1;iRNA_m5C:0.999536649623909 30372 chr1 228468283 228468283 1 + C T LUSC 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCAGAGGAGCGTGGCACCCTGGCCCTGCAGTGTGAAGT < 41bp 1 0.051300910775221 1 0.0800199210643768 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468283 synonymous SNV . 0 15 hm5C_associated_SNPs_30162 0 0 0 0 1 Ribosome 1 0.500231643926636 1 0.999536712146729 hm5C_site_30372 DeepMRMD:1;iRNA_m5C:0.999536712146729 30373 chr1 7845624 7845624 1 + C G LUSC 7845627 + 7845607 7845647 41 GCCCTCAACTATGCTCTCCGCTGTGTCCACAGCGTTCAAGG GCCCTCAACTATGCTCTGCGCTGTGTCCACAGCGTTCAAGG < 41bp 1 0.355733812135753 1 0.0439698100090027 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PER3 ENSG00000049246 CDS Human protein_coding chr1:7845627 chr1:7845624 synonymous SNV . 0 18 hm5C_associated_SNPs_30163 0 0 0 0 1 chromatin 1 0.500230953647206 1 0.999538092705587 hm5C_site_30373 DeepMRMD:1;iRNA_m5C:0.999538092705587 30374 chr16 22237271 22237271 1 + C G LUSC 22237252 + 22237232 22237272 41 GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTCC GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTGC < 41bp 1 0.415723457973727 1 0.566274106502533 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22237252 chr16:22237271 nonsynonymous SNV 0.807 3 40 hm5C_associated_SNPs_30164 0 0 1 0 1 Nucleus 1 0.500231643259067 0.867451786994934 0.999536713481866 hm5C_site_30374 DeepMRMD:0.867451786994934;iRNA_m5C:0.999536713481866 30375 chr1 42925442 42925442 1 + G C LUSC 42925451 + 42925431 42925471 41 CTAATATCCTTGAGTCACGACAGTCCTTTGTGTTTATTGTA CTAATATCCTTCAGTCACGACAGTCCTTTGTGTTTATTGTA < 41bp 1 0.0617206741236565 1 0.0848642289638519 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPCS ENSG00000127125 CDS Human protein_coding chr1:42925451 chr1:42925442 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_30165 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30375 DeepMRMD:1;iRNA_m5C:0.999536712157815 30376 chr8 133855011 133855011 1 + G C LUSC 133855017 + 133854997 133855037 41 TCTCGCAGACCCTGGGAGCTCAGATGATGATGATGTTAGTA TCTCGCAGACCCTGCGAGCTCAGATGATGATGATGTTAGTA < 41bp 1 0.55029120809603 1 0.553979337215424 experiment 0.899417583807939 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133855017 chr8:133855011 nonsynonymous SNV 0.996 1 15 hm5C_associated_SNPs_30166 0 0 1 0 0 Nucleus 1 0.500231643926018 0.892041325569152 0.999536712147964 hm5C_site_30376 DeepMRMD:0.892041325569152;iRNA_m5C:0.999536712147964 30377 chr18 74620347 74620347 1 + A T LUSC 74620335 + 74620315 74620355 41 AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATGC AGCCTCGATAGATGACAGCACTGTAGACCAGCTGAGCATGC < 41bp 1 0.479282302264594 1 0.170702040195465 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74620335 chr18:74620347 nonsynonymous SNV 0.788 1 33 hm5C_associated_SNPs_30167 0 0 1 0 1 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_30377 DeepMRMD:1;iRNA_m5C:0.999536712157818 30378 chr7 2686580 2686580 1 + C T LUSC 2686570 + 2686550 2686590 41 TTCTACTCCTTCTGGCTGTGCTGCCGGCGGCGCAAGAGCGA TTCTACTCCTTCTGGCTGTGCTGCCGGCGGTGCAAGAGCGA < 41bp 1 0.316976058908601 1 0.37427169084549 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686570 chr7:2686580 nonsynonymous SNV 0.997 4 31 hm5C_associated_SNPs_30168 0 0 1 0 2 Ribosome 1 0.500231643632896 1 0.999536712734208 hm5C_site_30378 DeepMRMD:1;iRNA_m5C:0.999536712734208 30379 chr10 17276803 17276803 1 + G T LUSC 17276805 + 17276785 17276825 41 CTCACCTGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC CTCACCTGTGAAGTGGATTCCCTTAAAGGAACCGTGAGTAC < 41bp 1 0.159616233268652 1 0.0449380576610565 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276805 chr10:17276803 nonsynonymous SNV 0.988 2 19 hm5C_associated_SNPs_30169 0 0 1 0 1 Ribosome 1 0.500231643920384 1 0.999536712159231 hm5C_site_30379 DeepMRMD:1;iRNA_m5C:0.999536712159231 30380 chr10 17276803 17276803 1 + G T LUSC 17276817 + 17276797 17276837 41 GTGGATGCCCTTAAAGGAACCGTGAGTACCAACCCTGCAGT GTGGATTCCCTTAAAGGAACCGTGAGTACCAACCCTGCAGT < 41bp 1 0.678022762051125 1 0.577186584472656 experiment 0.643954475897751 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276817 chr10:17276803 nonsynonymous SNV 0.988 2 7 hm5C_associated_SNPs_30170 0 0 1 0 1 Ribosome 1 0.500231644224777 0.845626831054688 0.999536711550446 hm5C_site_30380 DeepMRMD:0.845626831054688;iRNA_m5C:0.999536711550446 30381 chr18 54362331 54362331 1 + G T LUSC 54362330 + 54362310 54362350 41 TGTACATACCAGCACATGGACGACTTGTTTGTGGTCGTGAA TGTACATACCAGCACATGGACTACTTGTTTGTGGTCGTGAA < 41bp 1 0.165866036303621 1 0.0638448894023895 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR7 ENSG00000091157 CDS Human protein_coding chr18:54362330 chr18:54362331 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_30171 0 0 0 0 1 chromatin 1 0.500255658746623 1 0.999488682506754 hm5C_site_30381 DeepMRMD:1;iRNA_m5C:0.999488682506754 30382 chr16 77232101 77232101 1 + A T LUSC 77232113 + 77232093 77232133 41 GGGTGAAGAAAGAGGAGGACCGGCTCTTCATTCGTTACCCA GGGTGAAGTAAGAGGAGGACCGGCTCTTCATTCGTTACCCA < 41bp 1 0.561447341927294 1 0.318897426128387 experiment 0.877105316145412 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MON1B ENSG00000103111 CDS Human protein_coding chr16:77232113 chr16:77232101 stopgain 1.000 1 9 hm5C_associated_SNPs_30172 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30382 DeepMRMD:1;iRNA_m5C:0.999536712157815 30383 chr14 39650817 39650817 1 + G T LUSC 39650831 + 39650811 39650851 41 GTCGGAGTAGGGGCCGGGGACATAATAGAGATAGAAAGCAC GTCGGATTAGGGGCCGGGGACATAATAGAGATAGAAAGCAC < 41bp 1 0.689019653495021 1 0.152854114770889 experiment 0.621960693009959 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39650831 chr14:39650817 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_30174 0 0 1 0 0 Nucleus 1 0.500231643921091 1 0.999536712157819 hm5C_site_30383 DeepMRMD:1;iRNA_m5C:0.999536712157819 30384 chr7 150765122 150765122 1 + C G LUSC 150765104 + 150765084 150765124 41 CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTGCG < 41bp 1 0.536116653683616 1 0.371825397014618 experiment 0.927766692632768 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765104 chr7:150765122 synonymous SNV . 0 39 hm5C_associated_SNPs_30175 0 0 1 0 1 Ribosome 1 0.500231643881137 1 0.999536712237725 hm5C_site_30384 DeepMRMD:1;iRNA_m5C:0.999536712237725 30385 chr7 150765122 150765122 1 + C G LUSC 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTGCGC < 41bp 1 0.522024379009194 1 0.575860559940338 experiment 0.955951241981612 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765122 synonymous SNV . 0 38 hm5C_associated_SNPs_30176 0 0 1 0 1 Ribosome 1 0.500231643921093 0.848278880119324 0.999536712157815 hm5C_site_30385 DeepMRMD:0.848278880119324;iRNA_m5C:0.999536712157815 30386 chr15 78841227 78841227 1 + G A LUSC 78841245 + 78841225 78841265 41 AAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAAGAA AAAAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAAGAA < 41bp 1 0.677359362308309 1 0.454132884740829 experiment 0.645281275383383 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78841245 chr15:78841227 nonsynonymous SNV 0.998 1 3 hm5C_associated_SNPs_30177 0 0 1 0 1 Ribosome 1 0.500231699205338 1 0.999536601589324 hm5C_site_30386 DeepMRMD:1;iRNA_m5C:0.999536601589324 30387 chr8 145748500 145748500 1 + C G LUSC 145748482 - 145748462 145748502 41 GCGAGGGCCGGCCGCGAGCCCAGGCCCAGCTAGAAGGCGGG GCCAGGGCCGGCCGCGAGCCCAGGCCCAGCTAGAAGGCGGG < 41bp 1 0.542202375671189 1 0.788260936737061 experiment 0.915595248657621 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRRC24 ENSG00000254402 CDS Human protein_coding chr8:145748482 chr8:145748500 nonsynonymous SNV 0.143 0 3 hm5C_associated_SNPs_30178 0 0 0 0 0 chromatin 1 0.500231643912626 0.423478126525878 0.999536712174749 hm5C_site_30387 DeepMRMD:0.423478126525878;iRNA_m5C:0.999536712174749 30388 chr8 145748500 145748500 1 + C G LUSC 145748483 - 145748463 145748503 41 CGCGAGGGCCGGCCGCGAGCCCAGGCCCAGCTAGAAGGCGG CGCCAGGGCCGGCCGCGAGCCCAGGCCCAGCTAGAAGGCGG < 41bp 1 0.398543257759135 1 0.251545250415802 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRRC24 ENSG00000254402 CDS Human protein_coding chr8:145748483 chr8:145748500 nonsynonymous SNV 0.143 0 4 hm5C_associated_SNPs_30179 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30388 DeepMRMD:1;iRNA_m5C:0.999536712157815 30389 chr8 145748500 145748500 1 + C G LUSC 145748484 - 145748464 145748504 41 TCGCGAGGGCCGGCCGCGAGCCCAGGCCCAGCTAGAAGGCG TCGCCAGGGCCGGCCGCGAGCCCAGGCCCAGCTAGAAGGCG < 41bp 1 0.307308009582558 1 0.281141698360443 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRRC24 ENSG00000254402 CDS Human protein_coding chr8:145748484 chr8:145748500 nonsynonymous SNV 0.143 0 5 hm5C_associated_SNPs_30180 0 0 0 0 0 chromatin 1 0.500231643272827 1 0.999536713454346 hm5C_site_30389 DeepMRMD:1;iRNA_m5C:0.999536713454346 30390 chr5 115628151 115628151 1 + G A LUSC 115628155 + 115628135 115628175 41 TCTTTGTAAATAGCTAGAGACTATACAAGCACAGCTGGATT TCTTTGTAAATAGCTAAAGACTATACAAGCACAGCTGGATT < 41bp 1 0.360329913038252 1 0.377773433923721 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COMMD10 ENSG00000145781 CDS Human protein_coding chr5:115628155 chr5:115628151 nonsynonymous SNV 0.996 2 17 hm5C_associated_SNPs_30182 0 0 0 0 1 Ribosome 1 0.500137863428538 1 0.999724273142924 hm5C_site_30390 DeepMRMD:1;iRNA_m5C:0.999724273142924 30391 chr5 176710800 176710800 1 + G A LUSC 176710791 + 176710771 176710811 41 TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTCCC TTCTTTTGGAATTCTAGGACCGAATCATTAATGCTGGTCCC < 41bp 1 0.0819231705079771 1 0.194554090499878 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176710791 chr5:176710800 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_30183 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30391 DeepMRMD:1;iRNA_m5C:0.999536712157815 30392 chr2 177015066 177015066 1 + G A LUSC 177015059 + 177015039 177015079 41 TGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTG TGTAACGTTGTCTATATATACCCTGTAAAACCGAATTTGTG < 41bp 1 0.292083463589168 1 0.0321970582008362 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015059 chr2:177015066 . . 0 28 hm5C_associated_SNPs_30184 0 0 1 0 0 unknown 1 0.500231564150064 1 0.999536871699872 hm5C_site_30392 DeepMRMD:1;iRNA_m5C:0.999536871699872 30393 chr2 177015066 177015066 1 + G A LUSC 177015060 + 177015040 177015080 41 GTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGT GTAACGTTGTCTATATATACCCTGTAAAACCGAATTTGTGT < 41bp 1 0.15782296482317 1 0.0568874776363373 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015060 chr2:177015066 . . 0 27 hm5C_associated_SNPs_30185 0 0 1 0 0 unknown 1 0.500231656071315 1 0.999536687857369 hm5C_site_30393 DeepMRMD:1;iRNA_m5C:0.999536687857369 30394 chr2 177015066 177015066 1 + G A LUSC 177015070 + 177015050 177015090 41 CTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCGTA CTATATATACCCTGTAAAACCGAATTTGTGTGGTATCCGTA < 41bp 1 0.466233708730333 1 0.0788421034812927 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015070 chr2:177015066 . . 0 17 hm5C_associated_SNPs_30187 0 0 1 0 0 unknown 1 0.500231102143301 1 0.999537795713397 hm5C_site_30394 DeepMRMD:1;iRNA_m5C:0.999537795713397 30395 chr19 10561289 10561289 1 + C T LUSC 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGTTGGGCGGCCCCACCCCTGTCTGCAAGGCCA < 41bp 1 0.0384841693062586 1 0.135537773370743 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561289 synonymous SNV . 0 11 hm5C_associated_SNPs_30188 0 0 0 0 2 chromatin 1 0.500231643883892 1 0.999536712232217 hm5C_site_30395 DeepMRMD:1;iRNA_m5C:0.999536712232217 30396 chr2 197541356 197541356 1 + G A LUSC 197541357 + 197541337 197541377 41 GAACAGCTGTGCAAAAAGAGCTGCTAGAATCAACTATTGCA GAACAGCTGTGCAAAAAGAACTGCTAGAATCAACTATTGCA < 41bp 1 0.321360802216735 1 0.0727238655090332 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541357 chr2:197541356 synonymous SNV . 0 20 hm5C_associated_SNPs_30189 0 0 1 7 2 Endoplasmic reticulum 1 0.500231652761287 1 0.999536694477426 hm5C_site_30396 DeepMRMD:1;iRNA_m5C:0.999536694477426 30397 chrX 152959701 152959701 1 + C G LUSC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATGGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.323003322478042 1 0.0906555950641632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959701 nonsynonymous SNV 0.998 0 4 hm5C_associated_SNPs_30191 0 0 1 4 1 Ribosome 1 0.500232548195902 1 0.999534903608196 hm5C_site_30397 DeepMRMD:1;iRNA_m5C:0.999534903608196 30398 chr6 87967475 87967475 1 + C A LUSC 87967481 + 87967461 87967501 41 GATGGGAAATTTATCTGTAGCAGGTGTTACAGGGCTTTTAC GATGGGAAATTTATATGTAGCAGGTGTTACAGGGCTTTTAC < 41bp 1 0.618358276751515 1 0.698301672935486 experiment 0.763283446496971 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF292 ENSG00000188994 CDS Human protein_coding chr6:87967481 chr6:87967475 synonymous SNV . 0 15 hm5C_associated_SNPs_30192 0 0 1 0 0 Cytosol 1 0.500231643919917 0.603396654129028 0.999536712160166 hm5C_site_30398 DeepMRMD:0.603396654129028;iRNA_m5C:0.999536712160166 30399 chr7 45112369 45112369 1 + G T LUSC 45112377 + 45112357 45112397 41 ACCTACGAGGTGGAAGCCAGCACTTTGTGAGTGCACATGCC ACCTACGAGGTGTAAGCCAGCACTTTGTGAGTGCACATGCC < 41bp 1 0.235361158331871 1 0.0336934924125671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45112377 chr7:45112369 stopgain 0.244 0 13 hm5C_associated_SNPs_30193 0 0 1 27 2 Ribosome 1 0.50022982661735 1 0.999540346765299 hm5C_site_30399 DeepMRMD:1;iRNA_m5C:0.999540346765299 30400 chr1 45267581 45267581 1 + G A LUSC 45267571 + 45267551 45267591 41 GGTGGGGGATTTTGGGCTGGCAGCCCGGTTGGAGCCTCCGG GGTGGGGGATTTTGGGCTGGCAGCCCGGTTAGAGCCTCCGG < 41bp 1 0.429386158792971 1 0.199971526861191 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267571 chr1:45267581 synonymous SNV . 0 31 hm5C_associated_SNPs_30194 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30400 DeepMRMD:1;iRNA_m5C:0.999536712157815 30401 chr1 45244297 45244297 1 + G T LUSC 45244279 + 45244259 45244299 41 TCAAGGCCGGGACAGTGTGGCCGAGCAGATGGCTATGTGCT TCAAGGCCGGGACAGTGTGGCCGAGCAGATGGCTATGTTCT < 41bp 1 0.336203596088229 1 0.429712861776352 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45244279 chr1:45244297 synonymous SNV . 0 39 hm5C_associated_SNPs_30195 0 0 1 0 0 Cytosol 1 0.500231643921514 1 0.999536712156972 hm5C_site_30401 DeepMRMD:1;iRNA_m5C:0.999536712156972 30402 chr1 45244297 45244297 1 + G T LUSC 45244284 + 45244264 45244304 41 GCCGGGACAGTGTGGCCGAGCAGATGGCTATGTGCTAGAGG GCCGGGACAGTGTGGCCGAGCAGATGGCTATGTTCTAGAGG < 41bp 1 0.604280802193352 1 0.151397466659546 experiment 0.791438395613296 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45244284 chr1:45244297 synonymous SNV . 0 34 hm5C_associated_SNPs_30196 0 0 1 0 0 Cytosol 1 0.500235457880909 1 0.999529084238183 hm5C_site_30402 DeepMRMD:1;iRNA_m5C:0.999529084238183 30403 chr16 2816306 2816306 1 + G C LUSC 2816297 + 2816277 2816317 41 CCCAGTGAGCAGAAGGCGATCCAGATCCAGAACGCCACCAG CCCAGTGAGCAGAAGGCGATCCAGATCCACAACGCCACCAG < 41bp 1 0.671971574181496 1 0.739083766937256 experiment 0.656056851637008 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816297 chr16:2816306 nonsynonymous SNV 0.998 2 30 hm5C_associated_SNPs_30197 0 0 1 0 0 Nucleus 1 0.500231726245907 0.521832466125488 0.999536547508186 hm5C_site_30403 DeepMRMD:0.521832466125488;iRNA_m5C:0.999536547508186 30404 chr3 134851698 134851698 1 + G T LUSC 134851688 + 134851668 134851708 41 CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCC CATCTGCAAAAAGTGCCGGGCAGACCGCCGTAGCTGCTCCC < 41bp 1 0.0955248387323044 1 0.410195529460907 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851688 chr3:134851698 synonymous SNV . 0 31 hm5C_associated_SNPs_30198 0 0 0 0 0 exosome 1 0.50023164391889 1 0.99953671216222 hm5C_site_30404 DeepMRMD:1;iRNA_m5C:0.99953671216222 30405 chr7 12269405 12269405 1 + T A LUSC 12269401 + 12269381 12269421 41 AAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATT AAACAGTTATTGGAAAGGCACGCTAAAACAACATAACCATT < 41bp 1 0.499539935934763 1 0.0981483459472656 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM106B ENSG00000106460 CDS Human protein_coding chr7:12269401 chr7:12269405 stopgain 1.000 0 25 hm5C_associated_SNPs_30199 0 0 1 0 1 Ribosome 1 0.500231643879769 1 0.999536712240462 hm5C_site_30405 DeepMRMD:1;iRNA_m5C:0.999536712240462 30406 chr10 98744488 98744488 1 + A T LUSC 98744477 + 98744457 98744497 41 GGGCCTACGGTGAAAGCCAGCAAAGAAAAGCATGCTGATGG GGGCCTACGGTGAAAGCCAGCAAAGAAAAGCTTGCTGATGG < 41bp 1 0.570814030605133 1 0.433108001947403 experiment 0.858371938789735 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LCOR ENSG00000155640 CDS Human other chr10:98744477 chr10:98744488 nonsynonymous SNV 0.156 1 32 hm5C_associated_SNPs_30200 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_30406 DeepMRMD:1;iRNA_m5C:0.999536712157815 30407 chr10 104140380 104140380 1 + G A LUSC 104140373 + 104140353 104140393 41 CCCTCGGCCCTCTGGGAGATCACCTGGGAACGCATTGACTG CCCTCGGCCCTCTGGGAGATCACCTGGAAACGCATTGACTG < 41bp 1 0.423341280672589 1 0.185358583927155 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104140373 chr10:104140380 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_30201 0 0 1 0 0 Nucleus 1 0.500231643921382 1 0.999536712157236 hm5C_site_30407 DeepMRMD:1;iRNA_m5C:0.999536712157236 30408 chr2 158152278 158152278 1 + A G LUSC 158152276 + 158152256 158152296 41 GTAGAAAGAAAGTGGCCTGTCCAGTAATCGAAGTCATCAAT GTAGAAAGAAAGTGGCCTGTCCGGTAATCGAAGTCATCAAT < 41bp 1 0.361771648330644 1 0.243180513381958 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158152276 chr2:158152278 synonymous SNV . 0 23 hm5C_associated_SNPs_30202 0 0 0 0 1 Exosome 1 0.500231643771942 1 0.999536712456117 hm5C_site_30408 DeepMRMD:1;iRNA_m5C:0.999536712456117 30409 chr11 67202553 67202553 1 + G T LUSC 67202549 + 67202529 67202569 41 TCTACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCG TCTACCTCCACTCCTGCCACCGCCTCCGCCCTCGACCACCG < 41bp 1 0.584469245669447 1 0.217997342348099 experiment 0.831061508661105 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202549 chr11:67202553 synonymous SNV . 0 25 hm5C_associated_SNPs_30203 0 0 1 0 1 Ribosome 1 0.500231641644711 1 0.999536716710577 hm5C_site_30409 DeepMRMD:1;iRNA_m5C:0.999536716710577 30410 chr11 67202553 67202553 1 + G T LUSC 67202551 + 67202531 67202571 41 TACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCC TACCTCCACTCCTGCCACCGCCTCCGCCCTCGACCACCGCC < 41bp 1 0.108430017323332 1 0.148711353540421 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202551 chr11:67202553 synonymous SNV . 0 23 hm5C_associated_SNPs_30204 0 0 1 0 1 Ribosome 1 0.500229649721148 1 0.999540700557703 hm5C_site_30410 DeepMRMD:1;iRNA_m5C:0.999540700557703 30411 chr11 67202553 67202553 1 + G T LUSC 67202555 + 67202535 67202575 41 TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCCCCTC TCCACTCCTGCCACCGCCTCCGCCCTCGACCACCGCCCCTC < 41bp 1 0.675463361569037 1 0.232030779123306 experiment 0.649073276861926 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202555 chr11:67202553 synonymous SNV . 0 19 hm5C_associated_SNPs_30205 0 0 1 0 1 Ribosome 1 0.500231585020917 1 0.999536829958166 hm5C_site_30411 DeepMRMD:1;iRNA_m5C:0.999536829958166 30412 chr10 12148367 12148367 1 + G T LUSC 12148373 + 12148353 12148393 41 TTCAATGGTGCCCAGATCATCTTTGACACATTCATCTCTGG TTCAATGGTGCCCATATCATCTTTGACACATTCATCTCTGG < 41bp 1 0.163446878174874 1 0.145819783210754 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148373 chr10:12148367 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_30206 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644464385 1 0.999536711071231 hm5C_site_30412 DeepMRMD:1;iRNA_m5C:0.999536711071231 30413 chr2 37475350 37475350 1 + C A LUSC 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATACAAAGAAGATGGGAGAGAGAT < 41bp 1 0.422185823570759 1 0.211309522390366 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475350 nonsynonymous SNV 0.998 2 20 hm5C_associated_SNPs_30207 0 0 1 2 1 chromatin 1 0.50023164476423 1 0.999536710471539 hm5C_site_30413 DeepMRMD:1;iRNA_m5C:0.999536710471539 30414 chr7 142457345 142457345 1 + C T LUSC 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATGAATCCATTCCTGATCCTTACCTTTGTGGC < 41bp 1 0.249141120458825 1 0.137003034353256 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457345 nonsynonymous SNV 0.422 1 19 hm5C_associated_SNPs_30208 0 0 0 0 1 Cytosol 1 0.50023164460601 1 0.99953671078798 hm5C_site_30414 DeepMRMD:1;iRNA_m5C:0.99953671078798 30415 chr7 142457345 142457345 1 + C T LUSC 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATGAATCCATTCCTGATCCTTACCTTTGTGGCA < 41bp 1 0.157476444989319 1 0.202656239271164 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457345 nonsynonymous SNV 0.422 1 18 hm5C_associated_SNPs_30209 0 0 0 0 1 Cytosol 1 0.500231645725846 1 0.999536708548308 hm5C_site_30415 DeepMRMD:1;iRNA_m5C:0.999536708548308 30416 chr7 142457345 142457345 1 + C T LUSC 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATGAATCCATTCCTGATCCTTACCTTTGTGGCAGCTGC < 41bp 1 0.0640006045343751 1 0.0290971100330353 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457345 nonsynonymous SNV 0.422 1 13 hm5C_associated_SNPs_30210 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_30416 DeepMRMD:1;iRNA_m5C:0.999536712157814 30417 chr7 142457345 142457345 1 + C T LUSC 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATGAATCCATTCCTGATCCTTACCTTTGTGGCAGCTGCT < 41bp 1 0.0381940355025835 1 0.134593099355698 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457345 nonsynonymous SNV 0.422 1 12 hm5C_associated_SNPs_30211 0 0 0 0 1 Cytosol 1 0.500231642487216 1 0.999536715025569 hm5C_site_30417 DeepMRMD:1;iRNA_m5C:0.999536715025569 30418 chr7 142457345 142457345 1 + C T LUSC 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCATTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.045358624540437 1 0.0144142806529999 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457345 nonsynonymous SNV 0.422 1 8 hm5C_associated_SNPs_30212 0 0 0 0 1 Cytosol 1 0.500231643930694 1 0.999536712138613 hm5C_site_30418 DeepMRMD:1;iRNA_m5C:0.999536712138613 30419 chr7 142457345 142457345 1 + C T LUSC 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCATTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA < 41bp 1 0.154202209422149 1 0.13649919629097 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457345 nonsynonymous SNV 0.422 1 7 hm5C_associated_SNPs_30213 0 0 0 0 1 Cytosol 1 0.500231654798988 1 0.999536690402024 hm5C_site_30419 DeepMRMD:1;iRNA_m5C:0.999536690402024 30420 chr8 121259935 121259935 1 + C A LUSC 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCCATCTTCCACGGTGAAAGGCTATA < 41bp 1 0.0820629485715653 1 0.18807578086853 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259935 nonsynonymous SNV 0.013 3 26 hm5C_associated_SNPs_30215 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30420 DeepMRMD:1;iRNA_m5C:0.999536712157815 30421 chr8 121259935 121259935 1 + C A LUSC 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTCCACGGTGAAAGGCTATAGAAT < 41bp 1 0.646163224646305 1 0.333568453788757 experiment 0.707673550707389 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259935 nonsynonymous SNV 0.013 3 22 hm5C_associated_SNPs_30216 0 0 0 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_30421 DeepMRMD:1;iRNA_m5C:0.999536712157815 30422 chr11 117109630 117109630 1 + A G LUSC 117109627 + 117109607 117109647 41 GGTCTCTTAAGGCAGGGTGCCATACTAAGCAGCTTGCCTCC GGTCTCTTAAGGCAGGGTGCCATGCTAAGCAGCTTGCCTCC < 41bp 1 0.447043379250843 1 0.0963601768016815 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117109627 chr11:117109630 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_30217 0 0 0 0 0 chromatin 1 0.500231643820153 1 0.999536712359693 hm5C_site_30422 DeepMRMD:1;iRNA_m5C:0.999536712359693 30423 chr17 47904775 47904775 1 + G A LUSC 47904766 + 47904746 47904786 41 CCATTGTTCTCCCTCAGGACCTGATTGATGAGTGGATAGCC CCATTGTTCTCCCTCAGGACCTGATTGATAAGTGGATAGCC < 41bp 1 0.223482049138739 1 0.0248854756355286 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KAT7 ENSG00000136504 CDS Human protein_coding chr17:47904766 chr17:47904775 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_30218 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30423 DeepMRMD:1;iRNA_m5C:0.999536712157815 30424 chr17 39974690 39974690 1 + G A LUSC 39974691 + 39974671 39974711 41 TCTGGTTGGCTGATCAAGGGCATGGACCAGGGGCTGCTGGG TCTGGTTGGCTGATCAAGGACATGGACCAGGGGCTGCTGGG < 41bp 1 0.425848278443043 1 0.142030119895935 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974691 chr17:39974690 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_30219 0 0 1 0 2 Nucleus 1 0.500231651144607 1 0.999536697710787 hm5C_site_30424 DeepMRMD:1;iRNA_m5C:0.999536697710787 30425 chr17 39974690 39974690 1 + G A LUSC 39974698 + 39974678 39974718 41 GGCTGATCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGT GGCTGATCAAGGACATGGACCAGGGGCTGCTGGGCATGTGT < 41bp 1 0.612974657605577 1 0.887399792671204 experiment 0.774050684788847 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974698 chr17:39974690 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_30220 0 0 1 0 2 Nucleus 1 0.500231643920954 0.225200414657592 0.999536712158092 hm5C_site_30425 DeepMRMD:0.225200414657592;iRNA_m5C:0.999536712158092 30426 chr17 39974690 39974690 1 + G A LUSC 39974704 + 39974684 39974724 41 TCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGTCCTGGA TCAAGGACATGGACCAGGGGCTGCTGGGCATGTGTCCTGGA < 41bp 1 0.313143323954158 1 0.0371644496917725 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974704 chr17:39974690 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_30221 0 0 1 0 2 Nucleus 1 0.500253057479766 1 0.999493885040467 hm5C_site_30426 DeepMRMD:1;iRNA_m5C:0.999493885040467 30427 chr14 38679162 38679162 1 + C A LUSC 38679144 + 38679124 38679164 41 TAAACCTGGGCGTGTGGGTGCTATCGCTGCTCGTCATCCTG TAAACCTGGGCGTGTGGGTGCTATCGCTGCTCGTCATCATG < 41bp 1 0.12529771052336 1 0.0589966475963593 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSTR1 ENSG00000139874 CDS Human protein_coding chr14:38679144 chr14:38679162 nonsynonymous SNV 0.995 4 39 hm5C_associated_SNPs_30222 0 0 0 0 0 nucleus 1 0.500231643887363 1 0.999536712225274 hm5C_site_30427 DeepMRMD:1;iRNA_m5C:0.999536712225274 30428 chr12 6943117 6943117 1 + G A LUSC 6943099 + 6943079 6943119 41 TCCCTGGCAGATGTCCTTCTCCTGGAGGGTGTGACCTTGAC TCCCTGGCAGATGTCCTTCTCCTGGAGGGTGTGACCTTAAC < 41bp 1 0.245419102058999 1 0.821785926818848 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6943099 chr12:6943117 synonymous SNV . 0 39 hm5C_associated_SNPs_30223 0 0 1 0 2 membrane 1 0.500231643921092 0.356428146362304 0.999536712157815 hm5C_site_30428 DeepMRMD:0.356428146362304;iRNA_m5C:0.999536712157815 30429 chr16 81077201 81077201 1 + A G LUSC 81077198 + 81077178 81077218 41 GCTTGCTCTCTTAAGGAGAGCCTACCTCTTTTCAAAATTGC GCTTGCTCTCTTAAGGAGAGCCTGCCTCTTTTCAAAATTGC < 41bp 1 0.0392894881168376 1 0.056659072637558 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81077198 chr16:81077201 synonymous SNV . 0 24 hm5C_associated_SNPs_30225 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_30429 DeepMRMD:1;iRNA_m5C:0.999536712157815 30430 chr16 53504316 53504316 1 + G T LUSC 53504331 + 53504311 53504351 41 TGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGG TGGAGTGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGG < 41bp 1 0.101680130309165 1 0.34819757938385 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBL2 ENSG00000103479 CDS Human protein_coding chr16:53504331 chr16:53504316 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_30226 0 0 1 0 1 Ribosome 1 0.500231253315215 1 0.999537493369569 hm5C_site_30430 DeepMRMD:1;iRNA_m5C:0.999537493369569 30431 chr21 47842000 47842000 1 + G A LUSC 47842001 + 47841981 47842021 41 GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGC GTTTCAGCCGCTGCCGGAAACCATGAAGGAGAAGGAAGTGC < 41bp 1 0.0641335145056469 1 0.22693207859993 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47842001 chr21:47842000 nonsynonymous SNV 0.609 0 20 hm5C_associated_SNPs_30227 0 0 1 0 1 Exosome 1 0.500231643921088 1 0.999536712157824 hm5C_site_30431 DeepMRMD:1;iRNA_m5C:0.999536712157824 30432 chr2 162242066 162242066 1 + A G LUSC 162242075 + 162242055 162242095 41 GGGTCACTTAAACAAGCCATCTATCCAGGTATTGCCTATAT GGGTCACTTAAGCAAGCCATCTATCCAGGTATTGCCTATAT < 41bp 1 0.119085135404211 1 0.246283859014511 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162242075 chr2:162242066 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_30229 0 0 1 0 2 Cytosol 1 0.500231644248045 1 0.999536711503909 hm5C_site_30432 DeepMRMD:1;iRNA_m5C:0.999536711503909 30433 chr11 111835392 111835392 1 + C T LUSC 111835377 + 111835357 111835397 41 GATCTCCGGGATGGGGTGATCCTGGCATATCTCATCGAGAT GATCTCCGGGATGGGGTGATCCTGGCATATCTCATTGAGAT < 41bp 1 0.405059256122853 1 0.46609354019165 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111835377 chr11:111835392 synonymous SNV . 0 36 hm5C_associated_SNPs_30230 0 0 1 0 1 Ribosome 1 0.500231787512066 1 0.999536424975868 hm5C_site_30433 DeepMRMD:1;iRNA_m5C:0.999536424975868 30434 chr11 67376945 67376945 1 + G T LUSC 67376960 + 67376940 67376980 41 TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG TGAACTCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG < 41bp 1 0.456284496873354 1 0.737952530384064 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376960 chr11:67376945 nonsynonymous SNV 0.935 3 6 hm5C_associated_SNPs_30231 0 0 1 0 1 Ribosome 1 0.50023164200576 0.524094939231872 0.999536715988481 hm5C_site_30434 DeepMRMD:0.524094939231872;iRNA_m5C:0.999536715988481 30435 chr7 100485417 100485417 1 + A G LUSC 100485418 + 100485398 100485438 41 GTTTTTTAACAACTTCCTCACTGATGCTAAGCGCCCAGCTC GTTTTTTAACAACTTCCTCGCTGATGCTAAGCGCCCAGCTC < 41bp 1 0.409334971867058 1 0.158850282430649 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100485418 chr7:100485417 nonsynonymous SNV 0.996 1 20 hm5C_associated_SNPs_30233 0 0 1 0 0 Nucleus 1 0.500231643933279 1 0.999536712133441 hm5C_site_30435 DeepMRMD:1;iRNA_m5C:0.999536712133441 30436 chr15 41862298 41862298 1 + G A LUSC 41862285 + 41862265 41862305 41 TGTGGTCCTTGGTGTGCTAACGGCCCTGGTGACGGCTGCTG TGTGGTCCTTGGTGTGCTAACGGCCCTGGTGACAGCTGCTG < 41bp 1 0.673404669616821 1 0.194691687822342 experiment 0.653190660766358 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41862285 chr15:41862298 synonymous SNV . 0 34 hm5C_associated_SNPs_30234 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30436 DeepMRMD:1;iRNA_m5C:0.999536712157815 30437 chr14 102445718 102445718 1 + G A LUSC 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCAGGTCCTTACACTCAGTGAAGACTCGCCCTACGA < 41bp 1 0.204531727203917 1 0.73996639251709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445718 nonsynonymous SNV 0.992 1 8 hm5C_associated_SNPs_30235 0 0 1 0 1 Cytosol 1 0.500231643936593 0.52006721496582 0.999536712126814 hm5C_site_30437 DeepMRMD:0.52006721496582;iRNA_m5C:0.999536712126814 30438 chr5 149751742 149751742 1 + G A LUSC 149751738 + 149751718 149751758 41 CAAGAAGCCAGAAGAGGAGTCAGAGAGTAGTGAGGAGGGAT CAAGAAGCCAGAAGAGGAGTCAGAAAGTAGTGAGGAGGGAT < 41bp 1 0.428491377614255 1 0.60915207862854 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751738 chr5:149751742 synonymous SNV . 0 25 hm5C_associated_SNPs_30236 0 0 1 0 1 Nucleus 1 0.500231643923314 0.78169584274292 0.999536712153372 hm5C_site_30438 DeepMRMD:0.78169584274292;iRNA_m5C:0.999536712153372 30439 chr5 149751742 149751742 1 + G A LUSC 149751759 + 149751739 149751779 41 AGAGAGTAGTGAGGAGGGATCTGAAAGTGAGGAGGAGGCCC AGAAAGTAGTGAGGAGGGATCTGAAAGTGAGGAGGAGGCCC < 41bp 1 0.67039751335748 1 0.57197093963623 experiment 0.65920497328504 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149751759 chr5:149751742 synonymous SNV . 0 4 hm5C_associated_SNPs_30237 0 0 1 0 1 Nucleus 1 0.500231643921092 0.85605812072754 0.999536712157815 hm5C_site_30439 DeepMRMD:0.85605812072754;iRNA_m5C:0.999536712157815 30440 chr7 92987701 92987701 1 + C T LUSC 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGATAAAA < 41bp 1 0.509029706354127 1 0.413690477609634 experiment 0.981940587291746 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987701 stopgain 0.996 1 37 hm5C_associated_SNPs_30238 0 0 0 2 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30440 DeepMRMD:1;iRNA_m5C:0.999536712157815 30441 chr1 180034372 180034372 1 + G A LUSC 180034360 + 180034340 180034380 41 ATCTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA ATCTCCAGCAGTGAAACTAGCAGCATTATGCAAAAACTGAA < 41bp 1 0.562121301105635 1 0.155600070953369 experiment 0.87575739778873 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180034360 chr1:180034372 synonymous SNV . 0 33 hm5C_associated_SNPs_30240 0 0 1 0 1 Nucleus 1 0.50023167168657 1 0.99953665662686 hm5C_site_30441 DeepMRMD:1;iRNA_m5C:0.99953665662686 30442 chr1 65684559 65684559 1 + C T LUSC 65684546 + 65684526 65684566 41 CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACTCTCCTAG < 41bp 1 0.0913515690591697 1 0.121435344219208 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AK4 ENSG00000162433 CDS Human protein_coding chr1:65684546 chr1:65684559 nonsynonymous SNV 0.995 1 34 hm5C_associated_SNPs_30241 0 0 0 0 1 chromatin 1 0.500231630952936 1 0.999536738094128 hm5C_site_30442 DeepMRMD:1;iRNA_m5C:0.999536738094128 30443 chr16 22328500 22328500 1 + G C LUSC 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCACGCTGCCCCTGGCCCATCAGATCAAGATCCTGAT < 41bp 1 0.0598869823045544 1 0.0899012982845306 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328500 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_30242 0 0 1 0 2 Ribosome 1 0.500231643927798 1 0.999536712144405 hm5C_site_30443 DeepMRMD:1;iRNA_m5C:0.999536712144405 30444 chr8 145727009 145727009 1 + G A LUSC 145727002 + 145726982 145727022 41 TAGACCGGAGTGTCTCCTACCAGCTGAGCCCCCTGGACAGC TAGACCGGAGTGTCTCCTACCAGCTGAACCCCCTGGACAGC < 41bp 1 0.537100130059641 1 0.623322665691376 experiment 0.925799739880718 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145727002 chr8:145727009 nonsynonymous SNV 0.322 0 28 hm5C_associated_SNPs_30243 0 0 1 0 0 Ribosome 1 0.500231643762389 0.753354668617248 0.999536712475222 hm5C_site_30444 DeepMRMD:0.753354668617248;iRNA_m5C:0.999536712475222 30445 chr8 145727009 145727009 1 + G A LUSC 145727024 + 145727004 145727044 41 GCTGAGCCCCCTGGACAGCACCACCCCCCACACCCTGGTCC GCTGAACCCCCTGGACAGCACCACCCCCCACACCCTGGTCC < 41bp 1 0.133010885514068 1 0.0645573139190674 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145727024 chr8:145727009 nonsynonymous SNV 0.322 0 6 hm5C_associated_SNPs_30244 0 0 1 0 0 Ribosome 1 0.500231643921104 1 0.999536712157792 hm5C_site_30445 DeepMRMD:1;iRNA_m5C:0.999536712157792 30446 chr11 66411341 66411341 1 + C T LUSC 66411334 + 66411314 66411354 41 TCGATCCCTACGATAGACACCTGTTGCCGACCTCAGGAGCT TCGATCCCTACGATAGACACCTGTTGCTGACCTCAGGAGCT < 41bp 1 0.125371851000552 1 0.1197609603405 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66411334 chr11:66411341 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_30245 0 0 1 0 0 unknown 1 0.500231643923125 1 0.99953671215375 hm5C_site_30446 DeepMRMD:1;iRNA_m5C:0.99953671215375 30447 chr15 33022978 33022978 1 + C T LUSC 33022993 + 33022973 33023013 41 GGGTCCCAAGGTGCCATCCCCCCGCCAGACAAGGCCCAGCA GGGTCTCAAGGTGCCATCCCCCCGCCAGACAAGGCCCAGCA < 41bp 1 0.470337272591666 1 0.682403326034546 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GREM1 ENSG00000166923 CDS Human protein_coding chr15:33022993 chr15:33022978 synonymous SNV . 0 6 hm5C_associated_SNPs_30246 0 0 0 0 0 exosome 1 0.500231643921094 0.635193347930908 0.999536712157812 hm5C_site_30447 DeepMRMD:0.635193347930908;iRNA_m5C:0.999536712157812 30448 chr16 5127927 5127927 1 + A C LUSC 5127916 + 5127896 5127936 41 ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCCGCAT ATTTCATTGCAGGGCTGTGACCGTCTACGACCAGCCCGCAT < 41bp 1 0.167623199942754 1 0.218217194080353 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5127916 chr16:5127927 nonsynonymous SNV 0.043 3 32 hm5C_associated_SNPs_30247 0 0 1 0 2 Ribosome 1 0.500204839475083 1 0.999590321049834 hm5C_site_30448 DeepMRMD:1;iRNA_m5C:0.999590321049834 30449 chr8 73921123 73921123 1 + T C LUSC 73921113 + 73921093 73921133 41 AGGGGCAGTACCCAAGCGAGCCATTTAACATGGCGGAGGAT AGGGGCAGTACCCAAGCGAGCCATTTAACACGGCGGAGGAT < 41bp 1 0.260078212845073 1 0.0399024188518524 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TERF1 ENSG00000147601 CDS Human protein_coding chr8:73921113 chr8:73921123 nonsynonymous SNV 0.550 4 31 hm5C_associated_SNPs_30248 0 0 1 0 0 Nucleus 1 0.500231643922228 1 0.999536712155544 hm5C_site_30449 DeepMRMD:1;iRNA_m5C:0.999536712155544 30450 chr15 33022979 33022979 1 + C G LUSC 33022993 + 33022973 33023013 41 GGGTCCCAAGGTGCCATCCCCCCGCCAGACAAGGCCCAGCA GGGTCCGAAGGTGCCATCCCCCCGCCAGACAAGGCCCAGCA < 41bp 1 0.485303094916238 1 0.427417397499084 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GREM1 ENSG00000166923 CDS Human protein_coding chr15:33022993 chr15:33022979 nonsynonymous SNV 0.999 1 7 hm5C_associated_SNPs_30249 0 0 0 0 0 exosome 1 0.500231643921157 1 0.999536712157687 hm5C_site_30450 DeepMRMD:1;iRNA_m5C:0.999536712157687 30451 chr6 32134487 32134487 1 + C T LUSC 32134481 + 32134461 32134501 41 CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCG CGGGCGCTGTGTTCCAGGACCATGTATCGCGTTATGTGGCG < 41bp 1 0.226413168392004 1 0.180243372917175 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134481 chr6:32134487 synonymous SNV . 0 27 hm5C_associated_SNPs_30250 0 0 0 0 1 chromatin 1 0.500231639468869 1 0.999536721062263 hm5C_site_30451 DeepMRMD:1;iRNA_m5C:0.999536721062263 30452 chr8 145697789 145697789 1 + G T LUSC 145697780 + 145697760 145697800 41 GGGCCTCCCGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG GGGCCTCCCGAGCGCCTGGCCGTGAGGCATGGCCCAGAAGG < 41bp 1 0.69595510954512 1 0.66035395860672 experiment 0.608089780909759 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145697780 chr8:145697789 nonsynonymous SNV 0.867 0 30 hm5C_associated_SNPs_30251 0 0 1 0 2 nucleolus 1 0.500231643921092 0.67929208278656 0.999536712157815 hm5C_site_30452 DeepMRMD:0.67929208278656;iRNA_m5C:0.999536712157815 30453 chr5 179151779 179151779 1 + A T LUSC 179151781 + 179151761 179151801 41 AGGAGGAAGGAGAAGAGAAACTTGGTAAGAAACAGAGTCCA AGGAGGAAGGAGAAGAGATACTTGGTAAGAAACAGAGTCCA < 41bp 1 0.691053801425154 1 0.221968770027161 experiment 0.617892397149692 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179151781 chr5:179151779 nonsynonymous SNV 0.953 0 19 hm5C_associated_SNPs_30252 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30453 DeepMRMD:1;iRNA_m5C:0.999536712157815 30454 chr7 100210480 100210480 1 + G T LUSC 100210460 + 100210440 100210480 41 AGGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG AGGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGT < 41bp 1 0.284009257823551 1 0.159279942512512 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210460 chr7:100210480 synonymous SNV . 0 41 hm5C_associated_SNPs_30253 0 0 0 0 0 Cytosol 1 0.500231644688009 1 0.999536710623982 hm5C_site_30454 DeepMRMD:1;iRNA_m5C:0.999536710623982 30455 chr7 100210480 100210480 1 + G T LUSC 100210461 + 100210441 100210481 41 GGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG GGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGTG < 41bp 1 0.468752600746211 1 0.0951498746871948 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210461 chr7:100210480 synonymous SNV . 0 40 hm5C_associated_SNPs_30254 0 0 0 0 0 Cytosol 1 0.50023164392336 1 0.99953671215328 hm5C_site_30455 DeepMRMD:1;iRNA_m5C:0.99953671215328 30456 chr7 100210480 100210480 1 + G T LUSC 100210462 + 100210442 100210482 41 GAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG GAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGTGG < 41bp 1 0.427307189378049 1 0.329104244709015 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210462 chr7:100210480 synonymous SNV . 0 39 hm5C_associated_SNPs_30255 0 0 0 0 0 Cytosol 1 0.50033221301035 1 0.999335573979301 hm5C_site_30456 DeepMRMD:1;iRNA_m5C:0.999335573979301 30457 chr7 100210480 100210480 1 + G T LUSC 100210463 + 100210443 100210483 41 AGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGGC AGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGTGGC < 41bp 1 0.664188567875294 1 0.540681779384613 experiment 0.671622864249412 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210463 chr7:100210480 synonymous SNV . 0 38 hm5C_associated_SNPs_30256 0 0 0 0 0 Cytosol 1 0.500231643921092 0.918636441230774 0.999536712157815 hm5C_site_30457 DeepMRMD:0.918636441230774;iRNA_m5C:0.999536712157815 30458 chr7 100210480 100210480 1 + G T LUSC 100210476 + 100210456 100210496 41 GGGGCCCCCTGGGCGGGGGTCCCGGGGCGCCCCTCCTCCCT GGGGCCCCCTGGGCGGGGGTCCCGTGGCGCCCCTCCTCCCT < 41bp 1 0.609024432088391 1 0.399361819028854 experiment 0.781951135823218 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210476 chr7:100210480 synonymous SNV . 0 25 hm5C_associated_SNPs_30257 0 0 0 0 0 Cytosol 1 0.500231642819015 1 0.999536714361971 hm5C_site_30458 DeepMRMD:1;iRNA_m5C:0.999536714361971 30459 chr13 77570191 77570191 1 + G T LUSC 77570189 + 77570169 77570209 41 TGGTGTAATCAAGGCGCTGCCTGCTTTTTTGAGGGAATTGA TGGTGTAATCAAGGCGCTGCCTTCTTTTTTGAGGGAATTGA < 41bp 1 0.329609429627264 1 0.15270933508873 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570189 chr13:77570191 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_30259 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921197 1 0.999536712157605 hm5C_site_30459 DeepMRMD:1;iRNA_m5C:0.999536712157605 30460 chr10 17275867 17275867 1 + T A LUSC 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGACAGCAA < 41bp 1 0.601480811367868 1 0.832867324352264 experiment 0.797038377264264 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275867 synonymous SNV . 0 35 hm5C_associated_SNPs_30260 0 0 1 1 2 Ribosome 1 0.500231727834094 0.334265351295472 0.999536544331813 hm5C_site_30460 DeepMRMD:0.334265351295472;iRNA_m5C:0.999536544331813 30461 chr10 17275867 17275867 1 + T A LUSC 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACGGCTGCCCTGCGTGACGTACGACAGCAATAT < 41bp 1 0.374026110656239 1 0.193407416343689 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275867 synonymous SNV . 0 32 hm5C_associated_SNPs_30261 0 0 1 1 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_30461 DeepMRMD:1;iRNA_m5C:0.999536712157816 30462 chr10 17275867 17275867 1 + T A LUSC 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACGGCTGCCCTGCGTGACGTACGACAGCAATATGAAAG < 41bp 1 0.100359644377958 1 0.0528012812137604 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275867 synonymous SNV . 0 27 hm5C_associated_SNPs_30262 0 0 1 1 2 Ribosome 1 0.500231646210626 1 0.999536707578748 hm5C_site_30462 DeepMRMD:1;iRNA_m5C:0.999536707578748 30463 chr5 140573661 140573661 1 + C T LUSC 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATCAACGCGGACAACGGCCATCTGTTCGCCCTCAGGTC < 41bp 1 0.100269339910378 1 0.0488297045230865 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573661 synonymous SNV . 0 24 hm5C_associated_SNPs_30263 0 0 0 0 0 exosome 1 0.500231643921075 1 0.999536712157851 hm5C_site_30463 DeepMRMD:1;iRNA_m5C:0.999536712157851 30464 chr1 162725023 162725023 1 + G C LUSC 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGTAGCCAGATTTGTCCGCTTCATTCCAGTCACCGA < 41bp 1 0.29057155912438 1 0.676501393318176 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725023 synonymous SNV . 0 24 hm5C_associated_SNPs_30264 0 0 0 0 2 nucleolus 1 0.500231599093042 0.646997213363648 0.999536801813915 hm5C_site_30464 DeepMRMD:0.646997213363648;iRNA_m5C:0.999536801813915 30465 chr14 52417389 52417389 1 + G T LUSC 52417401 + 52417381 52417421 41 TCTATCCAGCACTCCGATGGCCAGCAACAACACCGCCAGCA TCTATCCATCACTCCGATGGCCAGCAACAACACCGCCAGCA < 41bp 1 0.280332434934439 1 0.207367926836014 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNG2 ENSG00000186469 CDS Human protein_coding chr14:52417401 chr14:52417389 nonsynonymous SNV 0.001 1 9 hm5C_associated_SNPs_30265 0 0 0 0 1 Cytosol 1 0.50023172883464 1 0.999536542330721 hm5C_site_30465 DeepMRMD:1;iRNA_m5C:0.999536542330721 30466 chr9 104307056 104307056 1 + G C LUSC 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTCATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT < 41bp 1 0.300555054890452 1 0.721238255500793 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307056 synonymous SNV . 0 7 hm5C_associated_SNPs_30266 0 0 0 0 1 nucleus 1 0.500231643921092 0.557523488998414 0.999536712157815 hm5C_site_30466 DeepMRMD:0.557523488998414;iRNA_m5C:0.999536712157815 30467 chr12 78520960 78520960 1 + A G LUSC 78520959 + 78520939 78520979 41 TTTAACAGCATGCAGCTTGACAGAAATACACTACCCAAAAA TTTAACAGCATGCAGCTTGACGGAAATACACTACCCAAAAA < 41bp 1 0.472253766736681 1 0.423526644706726 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAV3 ENSG00000067798 CDS Human protein_coding chr12:78520959 chr12:78520960 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_30267 0 0 0 0 2 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_30467 DeepMRMD:1;iRNA_m5C:0.999536712157818 30468 chr11 44639802 44639802 1 + G T LUSC 44639783 + 44639763 44639803 41 CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGCGA CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGCTA < 41bp 1 0.401916091909102 1 0.0853052735328674 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44639783 chr11:44639802 stopgain 0.317 0 40 hm5C_associated_SNPs_30268 0 0 1 0 1 Nucleus 1 0.500229797261494 1 0.999540405477012 hm5C_site_30468 DeepMRMD:1;iRNA_m5C:0.999540405477012 30469 chr11 44639800 44639800 1 + G T LUSC 44639783 + 44639763 44639803 41 CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGCGA CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTTCGA < 41bp 1 0.365936271007297 1 0.0709591209888458 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44639783 chr11:44639800 nonsynonymous SNV 0.776 4 38 hm5C_associated_SNPs_30270 0 0 1 0 1 Nucleus 1 0.500231572809852 1 0.999536854380297 hm5C_site_30469 DeepMRMD:1;iRNA_m5C:0.999536854380297 30470 chr10 118318738 118318738 1 + A G LUSC 118318718 + 118318698 118318738 41 CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAA CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAG < 41bp 1 0.527953823817356 1 0.147494703531265 experiment 0.944092352365287 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318718 chr10:118318738 nonsynonymous SNV 0.017 3 41 hm5C_associated_SNPs_30271 0 0 0 0 2 unknown 1 0.500231643933827 1 0.999536712132346 hm5C_site_30470 DeepMRMD:1;iRNA_m5C:0.999536712132346 30471 chr10 118318738 118318738 1 + A G LUSC 118318729 + 118318709 118318749 41 GTCACTATGCTGATAGATATCCTGGGAAAACAAATGATGTG GTCACTATGCTGATAGATATCCTGGGAAAGCAAATGATGTG < 41bp 1 0.570444216830761 1 0.349728107452393 experiment 0.859111566338479 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318729 chr10:118318738 nonsynonymous SNV 0.017 3 30 hm5C_associated_SNPs_30272 0 0 0 0 2 unknown 1 0.500231657822592 1 0.999536684354816 hm5C_site_30471 DeepMRMD:1;iRNA_m5C:0.999536684354816 30472 chr22 51117847 51117847 1 + C G LUSC 51117853 + 51117833 51117873 41 CACATCTGTGCCCTCTACAACCAGGTGCGACTGTGTGTCCT CACATCTGTGCCCTGTACAACCAGGTGCGACTGTGTGTCCT < 41bp 1 0.233443449639114 1 0.447756230831146 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51117853 chr22:51117847 synonymous SNV . 0 15 hm5C_associated_SNPs_30273 0 0 0 0 1 cytosol 1 0.500231289868528 1 0.999537420262943 hm5C_site_30472 DeepMRMD:1;iRNA_m5C:0.999537420262943 30473 chr3 48501837 48501837 1 + A G LUSC 48501851 + 48501831 48501871 41 GTAGAGACCAACCCTGAGGACTCAGTGTGCATCCTGGAAGG GTAGAGGCCAACCCTGAGGACTCAGTGTGCATCCTGGAAGG < 41bp 1 0.382664534323275 1 0.364351630210876 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48501851 chr3:48501837 nonsynonymous SNV 0.816 0 7 hm5C_associated_SNPs_30274 0 0 1 0 0 chromatin 1 0.500231643743648 1 0.999536712512705 hm5C_site_30473 DeepMRMD:1;iRNA_m5C:0.999536712512705 30474 chr1 222791476 222791476 1 + C T LUSC 222791471 + 222791451 222791491 41 ACATGGCTGCGGCGCCTGGGCTGCTCGTCTGGCTGCTCGTG ACATGGCTGCGGCGCCTGGGCTGCTTGTCTGGCTGCTCGTG < 41bp 1 0.613894684852373 1 0.05873042345047 experiment 0.772210630295255 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222791471 chr1:222791476 synonymous SNV . 0 26 hm5C_associated_SNPs_30275 0 0 1 0 0 Endoplasmic reticulum 1 0.500231673476361 1 0.999536653047277 hm5C_site_30474 DeepMRMD:1;iRNA_m5C:0.999536653047277 30475 chr19 36223339 36223339 1 + G A LUSC 36223344 + 36223324 36223364 41 GGCTCCCCCTGGCCCGGCCCCATCTCCACCACCCCCTGAAG GGCTCCCCCTGGCCCAGCCCCATCTCCACCACCCCCTGAAG < 41bp 1 0.0387799606397614 1 0.126233965158463 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36223344 chr19:36223339 synonymous SNV . 0 16 hm5C_associated_SNPs_30276 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30475 DeepMRMD:1;iRNA_m5C:0.999536712157815 30476 chr3 32483427 32483427 1 + G C LUSC 32483437 + 32483417 32483457 41 TTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCAC TTTGCGACTTCATAATGATCCTCGCCTTTTACCTGGTCCAC < 41bp 1 0.471618936465435 1 0.116212427616119 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32483437 chr3:32483427 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_30277 0 0 1 0 2 Ribosome 1 0.500231646314865 1 0.999536707370271 hm5C_site_30476 DeepMRMD:1;iRNA_m5C:0.999536707370271 30477 chr11 66249800 66249800 1 + C T LUSC 66249791 + 66249771 66249811 41 GCCTACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGGC GCCTACCACCTGTCCCGTGCCGCCTGGTATGGAGGCCTGGC < 41bp 1 0.505431873677116 1 0.1248799264431 experiment 0.989136252645767 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249791 chr11:66249800 synonymous SNV . 0 30 hm5C_associated_SNPs_30278 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30477 DeepMRMD:1;iRNA_m5C:0.999536712157815 30478 chr11 66249800 66249800 1 + C T LUSC 66249793 + 66249773 66249813 41 CTACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGGCTG CTACCACCTGTCCCGTGCCGCCTGGTATGGAGGCCTGGCTG < 41bp 1 0.348027600486076 1 0.0593896508216858 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249793 chr11:66249800 synonymous SNV . 0 28 hm5C_associated_SNPs_30279 0 0 1 0 0 Nucleus 1 0.500231643921136 1 0.999536712157729 hm5C_site_30478 DeepMRMD:1;iRNA_m5C:0.999536712157729 30479 chr22 26291141 26291141 1 + G C LUSC 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGCCCTTCGACTGTGCTCAGATG < 41bp 1 0.0298564504481378 1 0.0800071656703949 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291141 nonsynonymous SNV 0.854 3 22 hm5C_associated_SNPs_30281 0 0 1 0 2 chromatin 1 0.50021306425818 1 0.99957387148364 hm5C_site_30479 DeepMRMD:1;iRNA_m5C:0.99957387148364 30480 chr12 131488798 131488798 1 + G T LUSC 131488788 + 131488768 131488808 41 TTCCTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCA TTCCTCCCATTACCGCTTCCCGGCCCACGGTCAGAGCTTCA < 41bp 1 0.203526557218357 1 0.312256067991257 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488788 chr12:131488798 synonymous SNV . 0 31 hm5C_associated_SNPs_30282 0 0 1 0 1 chromatin 1 0.500231644067501 1 0.999536711864998 hm5C_site_30480 DeepMRMD:1;iRNA_m5C:0.999536711864998 30481 chr12 131488798 131488798 1 + G T LUSC 131488791 + 131488771 131488811 41 CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC CTCCCATTACCGCTTCCCGGCCCACGGTCAGAGCTTCATCC < 41bp 1 0.0438965533253879 1 0.0300208032131195 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488791 chr12:131488798 synonymous SNV . 0 28 hm5C_associated_SNPs_30283 0 0 1 0 1 chromatin 1 0.500231643920993 1 0.999536712158013 hm5C_site_30481 DeepMRMD:1;iRNA_m5C:0.999536712158013 30482 chr12 131488798 131488798 1 + G T LUSC 131488792 + 131488772 131488812 41 TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA TCCCATTACCGCTTCCCGGCCCACGGTCAGAGCTTCATCCA < 41bp 1 0.239053386612812 1 0.158117979764938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488792 chr12:131488798 synonymous SNV . 0 27 hm5C_associated_SNPs_30284 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30482 DeepMRMD:1;iRNA_m5C:0.999536712157815 30483 chr12 131488798 131488798 1 + G T LUSC 131488793 + 131488773 131488813 41 CCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAG CCCATTACCGCTTCCCGGCCCACGGTCAGAGCTTCATCCAG < 41bp 1 0.624777834863092 1 0.414950370788574 experiment 0.750444330273815 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488793 chr12:131488798 synonymous SNV . 0 26 hm5C_associated_SNPs_30285 0 0 1 0 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_30483 DeepMRMD:1;iRNA_m5C:0.999536712157818 30484 chr12 131488798 131488798 1 + G T LUSC 131488795 + 131488775 131488815 41 CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGAT CATTACCGCTTCCCGGCCCACGGTCAGAGCTTCATCCAGAT < 41bp 1 0.171142861876112 1 0.699609041213989 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488795 chr12:131488798 synonymous SNV . 0 24 hm5C_associated_SNPs_30286 0 0 1 0 1 chromatin 1 0.500231643921092 0.600781917572022 0.999536712157815 hm5C_site_30484 DeepMRMD:0.600781917572022;iRNA_m5C:0.999536712157815 30485 chr12 131488798 131488798 1 + G T LUSC 131488799 + 131488779 131488819 41 ACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGATCCCC ACCGCTTCCCGGCCCACGGTCAGAGCTTCATCCAGATCCCC < 41bp 1 0.423102253598534 1 0.751436829566956 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488799 chr12:131488798 synonymous SNV . 0 20 hm5C_associated_SNPs_30287 0 0 1 0 1 chromatin 1 0.500231643921092 0.497126340866088 0.999536712157816 hm5C_site_30485 DeepMRMD:0.497126340866088;iRNA_m5C:0.999536712157816 30486 chr8 124787443 124787443 1 + C G LUSC 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGCGGAGATCATCTCATGCT < 41bp 1 0.667082672826455 1 0.427761793136597 experiment 0.665834654347091 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787443 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_30288 0 0 0 0 2 Ribosome 1 0.500231639543688 1 0.999536720912624 hm5C_site_30486 DeepMRMD:1;iRNA_m5C:0.999536720912624 30487 chr1 114215971 114215971 1 + G T LUSC 114215980 + 114215960 114216000 41 CAGTAGAGCTGGAGAGAGGCCCCCGGGGCTTTGGATTCAGC CAGTAGAGCTGTAGAGAGGCCCCCGGGGCTTTGGATTCAGC < 41bp 1 0.185884684963862 1 0.169106990098953 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114215980 chr1:114215971 stopgain 1.000 1 12 hm5C_associated_SNPs_30289 0 0 0 0 1 Cytosol 1 0.500231645327621 1 0.999536709344757 hm5C_site_30487 DeepMRMD:1;iRNA_m5C:0.999536709344757 30488 chr1 40922637 40922637 1 + C T LUSC 40922642 + 40922622 40922662 41 GTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGG GTTAACCTTCAAGGATGTATCTGTGGACTTCACTCAGGAGG < 41bp 1 0.676033092446665 1 0.642999112606049 experiment 0.64793381510667 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZFP69B ENSG00000187801 CDS Human protein_coding chr1:40922642 chr1:40922637 nonsynonymous SNV 0.958 0 16 hm5C_associated_SNPs_30290 0 0 0 0 1 Nucleus 1 0.500231645935636 0.714001774787902 0.999536708128727 hm5C_site_30488 DeepMRMD:0.714001774787902;iRNA_m5C:0.999536708128727 30489 chr1 22307651 22307651 1 + G C LUSC 22307631 + 22307611 22307651 41 ACTCTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCC < 41bp 1 0.107370797993477 1 0.34442538022995 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307631 chr1:22307651 synonymous SNV . 0 41 hm5C_associated_SNPs_30291 0 0 0 0 1 unknown 1 0.500231643868496 1 0.999536712263008 hm5C_site_30489 DeepMRMD:1;iRNA_m5C:0.999536712263008 30490 chr1 22307651 22307651 1 + G C LUSC 22307634 + 22307614 22307654 41 CTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCCTGT < 41bp 1 0.131981240399934 1 0.105732351541519 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307634 chr1:22307651 synonymous SNV . 0 38 hm5C_associated_SNPs_30292 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30490 DeepMRMD:1;iRNA_m5C:0.999536712157815 30491 chr1 22307651 22307651 1 + G C LUSC 22307635 + 22307615 22307655 41 TGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCCTGTG < 41bp 1 0.137611658708318 1 0.0764385759830475 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307635 chr1:22307651 synonymous SNV . 0 37 hm5C_associated_SNPs_30293 0 0 0 0 1 unknown 1 0.500231635334817 1 0.999536729330366 hm5C_site_30491 DeepMRMD:1;iRNA_m5C:0.999536729330366 30492 chr1 22307651 22307651 1 + G C LUSC 22307637 + 22307617 22307657 41 GGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG GGGACCTCTTTGTGCATCCACTCTGGAACCGCTCCTGTGTG < 41bp 1 0.313448626064122 1 0.0939785540103912 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307637 chr1:22307651 synonymous SNV . 0 35 hm5C_associated_SNPs_30294 0 0 0 0 1 unknown 1 0.500231654310141 1 0.999536691379719 hm5C_site_30492 DeepMRMD:1;iRNA_m5C:0.999536691379719 30493 chr1 22307651 22307651 1 + G C LUSC 22307639 + 22307619 22307659 41 GACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGC GACCTCTTTGTGCATCCACTCTGGAACCGCTCCTGTGTGGC < 41bp 1 0.686827027493584 1 0.840980529785156 experiment 0.626345945012832 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307639 chr1:22307651 synonymous SNV . 0 33 hm5C_associated_SNPs_30295 0 0 0 0 1 unknown 1 0.500231338156743 0.318038940429688 0.999537323686514 hm5C_site_30493 DeepMRMD:0.318038940429688;iRNA_m5C:0.999537323686514 30494 chr1 22307651 22307651 1 + G C LUSC 22307645 + 22307625 22307665 41 TTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGG TTTGTGCATCCACTCTGGAACCGCTCCTGTGTGGCCTGTGG < 41bp 1 0.101358166710911 1 0.0524803400039673 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307645 chr1:22307651 synonymous SNV . 0 27 hm5C_associated_SNPs_30296 0 0 0 0 1 unknown 1 0.500231582086941 1 0.999536835826118 hm5C_site_30494 DeepMRMD:1;iRNA_m5C:0.999536835826118 30495 chr1 22307651 22307651 1 + G C LUSC 22307646 + 22307626 22307666 41 TTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGG TTGTGCATCCACTCTGGAACCGCTCCTGTGTGGCCTGTGGG < 41bp 1 0.128460401955637 1 0.0937142968177795 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307646 chr1:22307651 synonymous SNV . 0 26 hm5C_associated_SNPs_30297 0 0 0 0 1 unknown 1 0.500231431069508 1 0.999537137860985 hm5C_site_30495 DeepMRMD:1;iRNA_m5C:0.999537137860985 30496 chr1 22307651 22307651 1 + G C LUSC 22307648 + 22307628 22307668 41 GTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGGTG GTGCATCCACTCTGGAACCGCTCCTGTGTGGCCTGTGGGTG < 41bp 1 0.288326575746724 1 0.251418441534042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307648 chr1:22307651 synonymous SNV . 0 24 hm5C_associated_SNPs_30298 0 0 0 0 1 unknown 1 0.500222599200102 1 0.999554801599796 hm5C_site_30496 DeepMRMD:1;iRNA_m5C:0.999554801599796 30497 chr6 160494403 160494403 1 + G T LUSC 160494408 + 160494388 160494428 41 TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT TTCGTGTGCAGGCCTTAGGCCAGGCCAACCAATAGGCCCAT < 41bp 1 0.337249456744708 1 0.823978662490845 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494408 chr6:160494403 stopgain 0.635 0 16 hm5C_associated_SNPs_30299 0 0 1 0 1 Endoplasmic reticulum 1 0.500231648565455 0.35204267501831 0.999536702869091 hm5C_site_30497 DeepMRMD:0.35204267501831;iRNA_m5C:0.999536702869091 30498 chr6 146875734 146875734 1 + G A LUSC 146875716 + 146875696 146875736 41 AGATCAAGAGACCTTGAGAGCAGAGAACAAATCCCAGTGTT AGATCAAGAGACCTTGAGAGCAGAGAACAAATCCCAGTATT < 41bp 1 0.552059072081527 1 0.78357070684433 experiment 0.895881855836946 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAB32 ENSG00000118508 CDS Human protein_coding chr6:146875716 chr6:146875734 nonsynonymous SNV 0.997 2 39 hm5C_associated_SNPs_30300 0 0 1 0 0 Ribosome 1 0.500231638044645 0.43285858631134 0.999536723910711 hm5C_site_30498 DeepMRMD:0.43285858631134;iRNA_m5C:0.999536723910711 30499 chrX 73045196 73045196 1 + T C LUSC 73045203 - 73045183 73045223 41 TGTGGATACAAAGAAAGGAGCAAGCATAAAAAAGTGCTCTT TGTGGATACAAAGAAAGGAGCAAGCATGAAAAAGTGCTCTT < 41bp 1 0.178450077824226 1 0.338649809360504 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045203 chrX:73045196 . . 0 28 hm5C_associated_SNPs_30301 0 0 1 1 0 unknown 1 0.500231643824126 1 0.999536712351748 hm5C_site_30499 DeepMRMD:1;iRNA_m5C:0.999536712351748 30500 chrX 73045196 73045196 1 + T C LUSC 73045215 - 73045195 73045235 41 TGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATAA TGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATGA < 41bp 1 0.296646139752804 1 0.470594942569733 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045215 chrX:73045196 . . 0 40 hm5C_associated_SNPs_30302 0 0 1 1 0 unknown 1 0.500232075911936 1 0.999535848176129 hm5C_site_30500 DeepMRMD:1;iRNA_m5C:0.999535848176129 30501 chr1 65243601 65243601 1 + G T LUSC 65243608 + 65243588 65243628 41 GACTGGAGCTATTGGGTAGACAGTTGGGAGCATCAGCACTC GACTGGAGCTATTTGGTAGACAGTTGGGAGCATCAGCACTC < 41bp 1 0.581555559551149 1 0.120159238576889 experiment 0.836888880897703 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAVER2 ENSG00000162437 CDS Human protein_coding chr1:65243608 chr1:65243601 nonsynonymous SNV 0.917 1 14 hm5C_associated_SNPs_30303 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_30501 DeepMRMD:1;iRNA_m5C:0.999536712157817 30502 chr16 83999007 83999007 1 + A G LUSC 83999000 + 83998980 83999020 41 GAGCTGTCTGCCCTGGAGGCCGCCACAAGGGTGGGTGCGGT GAGCTGTCTGCCCTGGAGGCCGCCACAGGGGTGGGTGCGGT < 41bp 1 0.604318835606549 1 0.780471920967102 experiment 0.791362328786903 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83999000 chr16:83999007 nonsynonymous SNV 0.001 0 28 hm5C_associated_SNPs_30304 0 0 0 0 0 chromatin 1 0.500231643920604 0.439056158065796 0.999536712158793 hm5C_site_30502 DeepMRMD:0.439056158065796;iRNA_m5C:0.999536712158793 30503 chr9 101777769 101777769 1 + A T LUSC 101777755 + 101777735 101777775 41 GCTGCAACCGAAGTGTCCCTCAGTACTTTTGAGGATGAGGA GCTGCAACCGAAGTGTCCCTCAGTACTTTTGAGGTTGAGGA < 41bp 1 0.304945462759976 1 0.797161400318146 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101777755 chr9:101777769 nonsynonymous SNV 0.762 2 35 hm5C_associated_SNPs_30305 0 0 0 0 1 Endoplasmic reticulum 1 0.500231508327154 0.405677199363708 0.999536983345691 hm5C_site_30503 DeepMRMD:0.405677199363708;iRNA_m5C:0.999536983345691 30504 chr17 77043891 77043891 1 + G T LUSC 77043900 + 77043880 77043920 41 TACTGCTACGTGCCCGGCCTCTACTTCTTCAGCCTCAACGT TACTGCTACGTTCCCGGCCTCTACTTCTTCAGCCTCAACGT < 41bp 1 0.243318959183005 1 0.0412402153015137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77043900 chr17:77043891 synonymous SNV . 0 12 hm5C_associated_SNPs_30306 0 0 0 0 0 exosome 1 0.50023164392109 1 0.999536712157819 hm5C_site_30504 DeepMRMD:1;iRNA_m5C:0.999536712157819 30505 chr7 99701305 99701305 1 + G C LUSC 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCGCCCCGTCCTGTCCAGTCCCTCTGACCAGGTGAGGGAA < 41bp 1 0.192332432539227 1 0.0929222106933594 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701305 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_30307 0 0 0 0 2 Cytosol 1 0.500231643922702 1 0.999536712154596 hm5C_site_30505 DeepMRMD:1;iRNA_m5C:0.999536712154596 30506 chr10 134016258 134016258 1 + G A LUSC 134016266 + 134016246 134016286 41 TTTGTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC TTTGTCACCCCGAGGGCGGGCCGCTTCGTCCCTCGGAAAAC < 41bp 1 0.162418056773992 1 0.167118400335312 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016266 chr10:134016258 nonsynonymous SNV 0.005 4 13 hm5C_associated_SNPs_30308 0 0 0 0 0 Endoplasmic reticulum 1 0.50023164392127 1 0.999536712157461 hm5C_site_30506 DeepMRMD:1;iRNA_m5C:0.999536712157461 30507 chr8 110569170 110569170 1 + A T LUSC 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTTTTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA < 41bp 1 0.0302924723557969 1 0.149513363838196 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569170 nonsynonymous SNV 0.995 2 6 hm5C_associated_SNPs_30309 0 0 1 0 1 Ribosome 1 0.500231643823684 1 0.999536712352631 hm5C_site_30507 DeepMRMD:1;iRNA_m5C:0.999536712352631 30508 chr7 129093116 129093116 1 + G T LUSC 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTCAGAGGTCGATGTGCTACACTGGTCCATGTACAACTGC < 41bp 1 0.596682199701354 1 0.156086981296539 experiment 0.806635600597293 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093116 nonsynonymous SNV 0.998 4 31 hm5C_associated_SNPs_30310 0 0 1 0 2 Nucleus 1 0.500231643482091 1 0.999536713035817 hm5C_site_30508 DeepMRMD:1;iRNA_m5C:0.999536713035817 30509 chr7 148921516 148921516 1 + G C LUSC 148921521 + 148921501 148921541 41 AGCGGCTGCACACGGGCGAGCGGCCTTTCCAATGTGCACTG AGCGGCTGCACACGGCCGAGCGGCCTTTCCAATGTGCACTG < 41bp 1 0.425180733791225 1 0.632315814495087 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921521 chr7:148921516 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_30311 0 0 1 0 0 Cytosol 1 0.500231645239553 0.735368371009826 0.999536709520895 hm5C_site_30509 DeepMRMD:0.735368371009826;iRNA_m5C:0.999536709520895 30510 chr11 65687430 65687430 1 + G C LUSC 65687433 + 65687413 65687453 41 CCTCAGCCCGGGCGCTCGAGCTCTTCCTAGAGTCGCTGTTG CCTCAGCCCGGGCGCTCCAGCTCTTCCTAGAGTCGCTGTTG < 41bp 1 0.281390314055581 1 0.153156191110611 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65687433 chr11:65687430 nonsynonymous SNV 0.997 3 18 hm5C_associated_SNPs_30312 0 0 1 0 2 Cytosol 1 0.500231643920964 1 0.999536712158071 hm5C_site_30510 DeepMRMD:1;iRNA_m5C:0.999536712158071 30511 chr19 13054408 13054408 1 + G A LUSC 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCATACGCTAAGGAGTTTGGCAACGAGA < 41bp 1 0.58184824599212 1 0.184961766004562 experiment 0.836303508015759 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054408 nonsynonymous SNV 0.532 1 23 hm5C_associated_SNPs_30314 0 0 1 0 2 Ribosome 1 0.500231643921551 1 0.999536712156898 hm5C_site_30511 DeepMRMD:1;iRNA_m5C:0.999536712156898 30512 chr19 13054408 13054408 1 + G A LUSC 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTAAGGAGTTTGGCAACGAGACGTGGGGCGTAAC < 41bp 1 0.578912396662461 1 0.582678318023682 experiment 0.842175206675078 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054408 nonsynonymous SNV 0.532 1 10 hm5C_associated_SNPs_30315 0 0 1 0 2 Ribosome 1 0.50023164798019 0.834643363952636 0.999536704039621 hm5C_site_30512 DeepMRMD:0.834643363952636;iRNA_m5C:0.999536704039621 30513 chr19 13054408 13054408 1 + G A LUSC 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TAAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA < 41bp 1 0.667567937944205 1 0.43988099694252 experiment 0.664864124111591 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054408 nonsynonymous SNV 0.532 1 2 hm5C_associated_SNPs_30316 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_30513 DeepMRMD:1;iRNA_m5C:0.999536712157815 30514 chr2 74328110 74328110 1 + G C LUSC 74328122 + 74328102 74328142 41 TCAAGCAAGAGCCAGTAGACCCGCTGACCCAGGCTGAGCCT TCAAGCAACAGCCAGTAGACCCGCTGACCCAGGCTGAGCCT < 41bp 1 0.184912092457231 1 0.128584921360016 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74328122 chr2:74328110 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_30317 0 0 1 0 0 Cytosol 1 0.50023164385075 1 0.999536712298501 hm5C_site_30514 DeepMRMD:1;iRNA_m5C:0.999536712298501 30515 chr19 39950220 39950220 1 + C G LUSC 39950216 + 39950196 39950236 41 TAGGGATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG TAGGGATCCCAATCTGTGGACTGTGAAATGTAAGGTATGTG < 41bp 1 0.116520665413992 1 0.0984952747821808 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950216 chr19:39950220 synonymous SNV . 0 25 hm5C_associated_SNPs_30318 0 0 1 0 2 Nucleus 1 0.500231643920628 1 0.999536712158744 hm5C_site_30515 DeepMRMD:1;iRNA_m5C:0.999536712158744 30516 chr2 27900188 27900188 1 + G C LUSC 27900192 + 27900172 27900212 41 TAAATGATGCTGAAAGGGAACTTTCTGAAATTTCTGAGAGA TAAATGATGCTGAAAGCGAACTTTCTGAAATTTCTGAGAGA < 41bp 1 0.0342949891769459 1 0.0518271923065186 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900192 chr2:27900188 nonsynonymous SNV 0.486 0 17 hm5C_associated_SNPs_30319 0 0 1 0 2 nucleoplasm 1 0.500231618307584 1 0.999536763384831 hm5C_site_30516 DeepMRMD:1;iRNA_m5C:0.999536763384831 30517 chr12 62954451 62954451 1 + T C LUSC 62954463 + 62954443 62954483 41 TGTGCCTGTTCTTATAGGGCCCATATCAGGCATGAGCAGGC TGTGCCTGCTCTTATAGGGCCCATATCAGGCATGAGCAGGC < 41bp 1 0.0769063981528856 1 0.134051531553268 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62954463 chr12:62954451 nonsynonymous SNV 0.900 4 9 hm5C_associated_SNPs_30321 0 0 1 0 0 Nucleus 1 0.500231643921134 1 0.999536712157733 hm5C_site_30517 DeepMRMD:1;iRNA_m5C:0.999536712157733 30518 chr17 77077136 77077136 1 + G A LUSC 77077130 + 77077110 77077150 41 AAAGTGGGCAGCTCAAATGGCAAGACGAACTCAACCAGCAC AAAGTGGGCAGCTCAAATGGCAAGACAAACTCAACCAGCAC < 41bp 1 0.658535831996713 1 0.661464095115662 experiment 0.682928336006575 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ENGASE ENSG00000167280 CDS Human protein_coding chr17:77077130 chr17:77077136 nonsynonymous SNV 0.323 3 27 hm5C_associated_SNPs_30322 0 0 1 0 1 chromatin 1 0.500231650168706 0.677071809768676 0.999536699662588 hm5C_site_30518 DeepMRMD:0.677071809768676;iRNA_m5C:0.999536699662588 30519 chr2 197583256 197583256 1 + G A LUSC 197583260 + 197583240 197583280 41 TTGAAAGAAGTAAAGAGGAGCTGTCCCGAACAGTGAAGTGT TTGAAAGAAGTAAAGAAGAGCTGTCCCGAACAGTGAAGTGT < 41bp 1 0.0594042504588089 1 0.0756790339946747 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197583260 chr2:197583256 synonymous SNV . 0 17 hm5C_associated_SNPs_30323 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643463136 1 0.999536713073729 hm5C_site_30519 DeepMRMD:1;iRNA_m5C:0.999536713073729 30520 chr13 48941708 48941708 1 + G A LUSC 48941724 + 48941704 48941744 41 TCATGATAAAACTCTTCAGACTGATTCTATAGACAGGTATT TCATAATAAAACTCTTCAGACTGATTCTATAGACAGGTATT < 41bp 1 0.160037505088761 1 0.0586643218994141 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48941724 chr13:48941708 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_30324 0 0 1 0 2 Nucleus 1 0.500231616706308 1 0.999536766587384 hm5C_site_30520 DeepMRMD:1;iRNA_m5C:0.999536766587384 30521 chr16 68373336 68373336 1 + G A LUSC 68373342 + 68373322 68373362 41 TGCAGACCAGCCTCGGAGAGCAGGTCATCGTCCCTCCCGTT TGCAGACCAGCCTCAGAGAGCAGGTCATCGTCCCTCCCGTT < 41bp 1 0.610511449779425 1 0.499849289655685 experiment 0.778977100441149 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68373342 chr16:68373336 nonsynonymous SNV 0.861 4 15 hm5C_associated_SNPs_30325 0 0 1 0 0 Nucleus 1 0.500231643921672 1 0.999536712156656 hm5C_site_30521 DeepMRMD:1;iRNA_m5C:0.999536712156656 30522 chr1 2411368 2411368 1 + G A LUSC 2411365 + 2411345 2411385 41 TGGCCTGCGCTACCTCATGGCCGGCATCAGCGACGAGGACA TGGCCTGCGCTACCTCATGGCCGACATCAGCGACGAGGACA < 41bp 1 0.0973398981388673 1 0.0834796130657196 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2411365 chr1:2411368 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_30326 0 0 0 0 0 nucleus 1 0.500231643913058 1 0.999536712173885 hm5C_site_30522 DeepMRMD:1;iRNA_m5C:0.999536712173885 30523 chr6 116565164 116565164 1 + G C LUSC 116565147 + 116565127 116565167 41 TGGCTACTATCCAAATCCTCCACTGGTCTTATCAAGTGATG TGGCTACTATCCAAATCCTCCACTGGTCTTATCAAGTCATG < 41bp 1 0.201320944998405 1 0.0241162776947021 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116565147 chr6:116565164 nonsynonymous SNV 0.006 0 38 hm5C_associated_SNPs_30327 0 0 1 0 1 Cytosol 1 0.50023164392116 1 0.99953671215768 hm5C_site_30523 DeepMRMD:1;iRNA_m5C:0.99953671215768 30524 chr19 47423195 47423195 1 + G A LUSC 47423199 + 47423179 47423219 41 ACGAGGCCCACTTAGAGAAGCTGAGGAACGAAAGGAAAAGA ACGAGGCCCACTTAGAAAAGCTGAGGAACGAAAGGAAAAGA < 41bp 1 0.372127761567196 1 0.339038908481598 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47423199 chr19:47423195 synonymous SNV . 0 17 hm5C_associated_SNPs_30328 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_30524 DeepMRMD:1;iRNA_m5C:0.999536712157814 30525 chr19 47423195 47423195 1 + G A LUSC 47423207 + 47423187 47423227 41 CACTTAGAGAAGCTGAGGAACGAAAGGAAAAGAGTTGAGAT CACTTAGAAAAGCTGAGGAACGAAAGGAAAAGAGTTGAGAT < 41bp 1 0.469498488062761 1 0.505952715873718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47423207 chr19:47423195 synonymous SNV . 0 9 hm5C_associated_SNPs_30329 0 0 1 0 0 Ribosome 1 0.500231643921092 0.988094568252564 0.999536712157815 hm5C_site_30525 DeepMRMD:0.988094568252564;iRNA_m5C:0.999536712157815 30526 chr2 32673984 32673984 1 + G T LUSC 32673982 + 32673962 32674002 41 GTCAGATGAAATTGATTTATCAGATGTCCTTTCAGGTAGTG GTCAGATGAAATTGATTTATCATATGTCCTTTCAGGTAGTG < 41bp 1 0.0492180717284148 1 0.131064563989639 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673982 chr2:32673984 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_30330 0 0 1 0 1 Nucleus 1 0.500231924671436 1 0.999536150657127 hm5C_site_30526 DeepMRMD:1;iRNA_m5C:0.999536150657127 30527 chr2 32673984 32673984 1 + G T LUSC 32673989 + 32673969 32674009 41 GAAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTT GAAATTGATTTATCATATGTCCTTTCAGGTAGTGATTTCTT < 41bp 1 0.00527528880068437 1 0.0131539702415466 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673989 chr2:32673984 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_30331 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_30527 DeepMRMD:1;iRNA_m5C:0.999536712157813 30528 chr2 32673984 32673984 1 + G T LUSC 32673990 + 32673970 32674010 41 AAATTGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTT AAATTGATTTATCATATGTCCTTTCAGGTAGTGATTTCTTT < 41bp 1 0.00706864731606944 1 0.0615566372871399 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673990 chr2:32673984 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_30332 0 0 1 0 1 Nucleus 1 0.500231643981902 1 0.999536712036195 hm5C_site_30528 DeepMRMD:1;iRNA_m5C:0.999536712036195 30529 chr2 32673984 32673984 1 + G T LUSC 32673994 + 32673974 32674014 41 TGATTTATCAGATGTCCTTTCAGGTAGTGATTTCTTTTATT TGATTTATCATATGTCCTTTCAGGTAGTGATTTCTTTTATT < 41bp 1 0.16133572898205 1 0.161861032247543 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32673994 chr2:32673984 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_30333 0 0 1 0 1 Nucleus 1 0.500231636821715 1 0.99953672635657 hm5C_site_30529 DeepMRMD:1;iRNA_m5C:0.99953672635657 30530 chr8 128750739 128750739 1 + C G LUSC 128750748 + 128750728 128750768 41 TACGTTGCGGTCACACCCTTCTCCCTTCGGGGAGACAACGA TACGTTGCGGTGACACCCTTCTCCCTTCGGGGAGACAACGA < 41bp 1 0.572139598681723 1 0.783428192138672 experiment 0.855720802636554 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYC ENSG00000136997 CDS Human protein_coding chr8:128750748 chr8:128750739 synonymous SNV . 0 12 hm5C_associated_SNPs_30334 0 0 1 0 0 Cytosol 1 0.500231643921614 0.433143615722656 0.999536712156771 hm5C_site_30530 DeepMRMD:0.433143615722656;iRNA_m5C:0.999536712156771 30531 chr3 128631375 128631375 1 + G C LUSC 128631356 + 128631336 128631376 41 CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATGAGCAGA CTTTTCCTTCCCAGATGCTCCAGAAAACCTAGATGAGCACA < 41bp 1 0.537000141368915 1 0.629260957241058 experiment 0.92599971726217 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128631356 chr3:128631375 nonsynonymous SNV 0.977 0 40 hm5C_associated_SNPs_30335 0 0 1 1 1 Endoplasmic reticulum 1 0.500231643921177 0.741478085517884 0.999536712157645 hm5C_site_30531 DeepMRMD:0.741478085517884;iRNA_m5C:0.999536712157645 30532 chr3 63965681 63965681 1 + G C LUSC 63965690 + 63965670 63965710 41 CAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTCTT CAAAAGCAAAGCAGGCAGTGCAAGTGGAAGCAACCGTTCTT < 41bp 1 0.342707754305909 1 0.737779021263123 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63965690 chr3:63965681 nonsynonymous SNV 0.999 0 12 hm5C_associated_SNPs_30336 0 0 1 0 1 Cytosol 1 0.500231643918949 0.524441957473754 0.999536712162102 hm5C_site_30532 DeepMRMD:0.524441957473754;iRNA_m5C:0.999536712162102 30533 chr16 4431739 4431739 1 + C A LUSC 4431752 + 4431732 4431772 41 GCCTCTTCCCCCGCCTGCGGCTGCTGGCAGCTGCCCGCAAC GCCTCTTACCCCGCCTGCGGCTGCTGGCAGCTGCCCGCAAC < 41bp 1 0.593851169813013 1 0.233707249164581 experiment 0.812297660373974 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VASN ENSG00000168140 CDS Human protein_coding chr16:4431752 chr16:4431739 nonsynonymous SNV 0.884 1 8 hm5C_associated_SNPs_30337 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30533 DeepMRMD:1;iRNA_m5C:0.999536712157815 30534 chr11 60704150 60704150 1 + C G LUSC 60704142 + 60704122 60704162 41 GGCCCTCCTGGGGGCACCACCAGCTCCTCAAGCACCCTGGC GGCCCTCCTGGGGGCACCACCAGCTCCTGAAGCACCCTGGC < 41bp 1 0.583613153294163 1 0.867550492286682 experiment 0.832773693411674 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60704142 chr11:60704150 stopgain 0.027 0 29 hm5C_associated_SNPs_30338 0 0 1 0 0 Ribosome 1 0.500231643921092 0.264899015426636 0.999536712157815 hm5C_site_30534 DeepMRMD:0.264899015426636;iRNA_m5C:0.999536712157815 30535 chr3 184648317 184648317 1 + G A LUSC 184648321 + 184648301 184648341 41 GACACAGTGCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCA GACACAGTGCAGAGGAAAAGCAGTCTGTATGGCAGAAAGCA < 41bp 1 0.127440413383591 1 0.250581383705139 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184648321 chr3:184648317 synonymous SNV . 0 17 hm5C_associated_SNPs_30339 0 0 1 0 2 chromatin 1 0.500231644050452 1 0.999536711899096 hm5C_site_30535 DeepMRMD:1;iRNA_m5C:0.999536711899096 30536 chr17 37358612 37358612 1 + G A LUSC 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCCACAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG < 41bp 1 0.103357725848101 1 0.0311072766780853 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358612 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_30340 0 0 1 0 2 chromatin 1 0.500231643920855 1 0.99953671215829 hm5C_site_30536 DeepMRMD:1;iRNA_m5C:0.99953671215829 30537 chr3 184040713 184040713 1 + C T LUSC 184040721 + 184040701 184040741 41 CCAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA CCAGAGGGATTGTCACATATCAGTGACGTGGTGCTGGACAA < 41bp 1 0.658051802658116 1 0.35762956738472 experiment 0.683896394683769 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184040721 chr3:184040713 nonsynonymous SNV 0.993 3 13 hm5C_associated_SNPs_30341 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_30537 DeepMRMD:1;iRNA_m5C:0.999536712157812 30538 chr19 50733853 50733853 1 + C T LUSC 50733861 + 50733841 50733881 41 TTCTACCAGCTGCTGGGGGGCGCTGGAGAGCAGCTCAAAGG TTCTACCAGCTGTTGGGGGGCGCTGGAGAGCAGCTCAAAGG < 41bp 1 0.293351486449318 1 0.451700270175934 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50733861 chr19:50733853 synonymous SNV . 0 13 hm5C_associated_SNPs_30342 0 0 0 0 2 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_30538 DeepMRMD:1;iRNA_m5C:0.999536712157815 30539 chr18 74622050 74622050 1 + C T LUSC 74622068 + 74622048 74622088 41 CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT CTTTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT < 41bp 1 0.350841968819789 1 0.35276997089386 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622068 chr18:74622050 synonymous SNV . 0 3 hm5C_associated_SNPs_30343 0 0 1 0 2 Cytosol 1 0.500231643919597 1 0.999536712160807 hm5C_site_30539 DeepMRMD:1;iRNA_m5C:0.999536712160807 30540 chr2 236877234 236877234 1 + T A LUSC 236877245 + 236877225 236877265 41 ACTAGCAACTTCAAAGCCGACGGCCTGTCCGGCACTGCTGA ACTAGCAACATCAAAGCCGACGGCCTGTCCGGCACTGCTGA < 41bp 1 0.139229914557481 1 0.500005424022675 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236877245 chr2:236877234 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_30344 0 0 1 0 1 Nucleus 1 0.500231643921092 0.99998915195465 0.999536712157815 hm5C_site_30540 DeepMRMD:0.99998915195465;iRNA_m5C:0.999536712157815 30541 chr2 236877234 236877234 1 + T A LUSC 236877249 + 236877229 236877269 41 GCAACTTCAAAGCCGACGGCCTGTCCGGCACTGCTGAAGGT GCAACATCAAAGCCGACGGCCTGTCCGGCACTGCTGAAGGT < 41bp 1 0.0413203413126492 1 0.220472484827042 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236877249 chr2:236877234 nonsynonymous SNV 0.999 1 6 hm5C_associated_SNPs_30345 0 0 1 0 1 Nucleus 1 0.500231643921156 1 0.999536712157687 hm5C_site_30541 DeepMRMD:1;iRNA_m5C:0.999536712157687 30542 chr22 26422861 26422861 1 + A G LUSC 26422843 + 26422823 26422863 41 GGCAGTGACGAGGGAAACCTCTCGCTGAGGGTTGGGGCAAA GGCAGTGACGAGGGAAACCTCTCGCTGAGGGTTGGGGCGAA < 41bp 1 0.540260406973788 1 0.847557902336121 experiment 0.919479186052425 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26422843 chr22:26422861 synonymous SNV . 0 39 hm5C_associated_SNPs_30346 0 0 0 0 0 chromatin 1 0.500231643921092 0.304884195327758 0.999536712157815 hm5C_site_30542 DeepMRMD:0.304884195327758;iRNA_m5C:0.999536712157815 30543 chr11 73102251 73102251 1 + G T LUSC 73102245 + 73102225 73102265 41 TCAACCATGTTCCTGGGCACCTCTGGGTACTCATGGCTGTG TCAACCATGTTCCTGGGCACCTCTGGTTACTCATGGCTGTG < 41bp 1 0.270501824405211 1 0.199500679969788 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RELT ENSG00000054967 CDS Human protein_coding chr11:73102245 chr11:73102251 nonsynonymous SNV 0.034 2 27 hm5C_associated_SNPs_30347 0 0 1 0 2 chromatin 1 0.5002316439211 1 0.999536712157799 hm5C_site_30543 DeepMRMD:1;iRNA_m5C:0.999536712157799 30544 chr19 34292106 34292106 1 + G T LUSC 34292109 + 34292089 34292129 41 CCGGCTGTCTCTCACCCGGTCGCCTGTGTCTCCCCTGGCTG CCGGCTGTCTCTCACCCTGTCGCCTGTGTCTCCCCTGGCTG < 41bp 1 0.687418545116107 1 0.171174257993698 experiment 0.625162909767787 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34292109 chr19:34292106 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_30348 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30544 DeepMRMD:1;iRNA_m5C:0.999536712157815 30545 chr12 101720957 101720957 1 + G T LUSC 101720976 + 101720956 101720996 41 GGGACCCAACCTGAGGAGATCCAGATATTCTTAGACCTGCT GTGACCCAACCTGAGGAGATCCAGATATTCTTAGACCTGCT < 41bp 1 0.332534627609708 1 0.325878441333771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101720976 chr12:101720957 nonsynonymous SNV 0.800 3 2 hm5C_associated_SNPs_30349 0 0 1 0 2 Cytosol 1 0.500231641783299 1 0.999536716433402 hm5C_site_30545 DeepMRMD:1;iRNA_m5C:0.999536716433402 30546 chr14 38679133 38679133 1 + G T LUSC 38679144 + 38679124 38679164 41 TAAACCTGGGCGTGTGGGTGCTATCGCTGCTCGTCATCCTG TAAACCTGGTCGTGTGGGTGCTATCGCTGCTCGTCATCCTG < 41bp 1 0.155519116859695 1 0.127609968185425 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSTR1 ENSG00000139874 CDS Human protein_coding chr14:38679144 chr14:38679133 nonsynonymous SNV 0.999 2 10 hm5C_associated_SNPs_30350 0 0 0 0 0 nucleus 1 0.500231643748583 1 0.999536712502834 hm5C_site_30546 DeepMRMD:1;iRNA_m5C:0.999536712502834 30547 chr8 77619845 77619845 1 + C A LUSC 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCA < 41bp 1 0.198927907327005 1 0.507720589637756 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619845 synonymous SNV . 0 41 hm5C_associated_SNPs_30351 0 0 0 0 1 Ribosome 1 0.500231643920916 0.984558820724488 0.999536712158167 hm5C_site_30547 DeepMRMD:0.984558820724488;iRNA_m5C:0.999536712158167 30548 chr1 39927568 39927568 1 + C T LUSC 39927585 + 39927565 39927605 41 CACCAAGTTAGAGATGACTGCTGTGGCTGACATTTTCGACC CACTAAGTTAGAGATGACTGCTGTGGCTGACATTTTCGACC < 41bp 1 0.133387770314954 1 0.0790388584136963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39927585 chr1:39927568 synonymous SNV . 0 4 hm5C_associated_SNPs_30352 0 0 1 0 0 Endoplasmic reticulum 1 0.500242206135523 1 0.999515587728954 hm5C_site_30548 DeepMRMD:1;iRNA_m5C:0.999515587728954 30549 chr2 109400061 109400061 1 + A G MESO 109400063 + 109400043 109400083 41 TTTTTTCAGGGAGGAGATATCACCAAACATGATGGAACAGG TTTTTTCAGGGAGGAGATGTCACCAAACATGATGGAACAGG < 41bp 1 0.600238850872754 1 0.44956761598587 experiment 0.799522298254492 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109400063 chr2:109400061 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_30353 0 0 1 0 1 Nucleus 1 0.500231664297675 1 0.99953667140465 hm5C_site_30549 DeepMRMD:1;iRNA_m5C:0.99953667140465 30550 chr6 43188276 43188276 1 + C A MESO 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CACGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.464763581344502 1 0.415482938289642 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188276 nonsynonymous SNV 0.617 0 2 hm5C_associated_SNPs_30354 0 0 0 0 2 chromatin 1 0.500231643975005 1 0.999536712049991 hm5C_site_30550 DeepMRMD:1;iRNA_m5C:0.999536712049991 30551 chr1 87805758 87805758 1 + G A MESO 87805775 + 87805755 87805795 41 ATCGCCTGGTCCCGGGAGATCGGTTTCACTACATCAATGGC ATCACCTGGTCCCGGGAGATCGGTTTCACTACATCAATGGC < 41bp 1 0.361787557627279 1 0.391092211008072 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMO4 ENSG00000143013 CDS Human protein_coding chr1:87805775 chr1:87805758 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_30355 0 0 1 0 0 Ribosome 1 0.500231643768931 1 0.999536712462138 hm5C_site_30551 DeepMRMD:1;iRNA_m5C:0.999536712462138 30552 chr19 52195900 52195900 1 + C T MESO 52195882 + 52195862 52195902 41 CCTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGC CCTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTTGC < 41bp 1 0.278686765963953 1 0.0851472914218903 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195882 chr19:52195900 . . 0 39 hm5C_associated_SNPs_30356 0 0 1 0 0 unknown 1 0.500231643920451 1 0.999536712159098 hm5C_site_30552 DeepMRMD:1;iRNA_m5C:0.999536712159098 30553 chr19 52195900 52195900 1 + C T MESO 52195883 + 52195863 52195903 41 CTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCC CTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTTGCC < 41bp 1 0.386312942419755 1 0.258323699235916 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195883 chr19:52195900 . . 0 38 hm5C_associated_SNPs_30357 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30553 DeepMRMD:1;iRNA_m5C:0.999536712157815 30554 chr19 52195900 52195900 1 + C T MESO 52195886 + 52195866 52195906 41 GCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCA GCACCCACCCGTAGAACCGACCTTGCGGGGCCTTTGCCGCA < 41bp 1 0.0973211307149762 1 0.0243508517742157 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195886 chr19:52195900 . . 0 35 hm5C_associated_SNPs_30358 0 0 1 0 0 unknown 1 0.500231643919136 1 0.999536712161728 hm5C_site_30554 DeepMRMD:1;iRNA_m5C:0.999536712161728 30555 chr19 52195900 52195900 1 + C T MESO 52195887 + 52195867 52195907 41 CACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCAC CACCCACCCGTAGAACCGACCTTGCGGGGCCTTTGCCGCAC < 41bp 1 0.368040987268201 1 0.10883292555809 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195887 chr19:52195900 . . 0 34 hm5C_associated_SNPs_30359 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30555 DeepMRMD:1;iRNA_m5C:0.999536712157815 30556 chr19 52196893 52196893 1 + C G MESO 52196899 + 52196879 52196919 41 TACTCTGAGCGCCTCCGCATCTGCCAGATGTTTGTTGGGAT TACTCTGAGCGCCTGCGCATCTGCCAGATGTTTGTTGGGAT < 41bp 1 0.193942980254464 1 0.450587689876556 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPACA6 ENSG00000182310;ENSG00000273318 ncRNA_exonic Human other chr19:52196899 chr19:52196893 . . 0 15 hm5C_associated_SNPs_30360 0 0 1 0 0 chromatin 1 0.500231643917282 1 0.999536712165435 hm5C_site_30556 DeepMRMD:1;iRNA_m5C:0.999536712165435 30557 chr2 74154166 74154166 1 + C G MESO 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATGGAA < 41bp 1 0.662747279222574 1 0.21700257062912 experiment 0.674505441554852 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154166 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_30361 0 0 1 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30557 DeepMRMD:1;iRNA_m5C:0.999536712157815 30558 chr2 219616512 219616512 1 + C A MESO 219616527 + 219616507 219616547 41 TGACCCAGAAAATTCCTGATCAGGTAGGAGATTGGTCTTCC TGACCAAGAAAATTCCTGATCAGGTAGGAGATTGGTCTTCC < 41bp 1 0.492433249287894 1 0.47981658577919 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219616527 chr2:219616512 nonsynonymous SNV 0.998 0 6 hm5C_associated_SNPs_30364 0 0 1 0 2 Cytosol 1 0.500231643917646 1 0.999536712164708 hm5C_site_30558 DeepMRMD:1;iRNA_m5C:0.999536712164708 30559 chr8 61533344 61533344 1 + C G MESO 61533362 + 61533342 61533382 41 GTCTAGCTGCCCAACGGGGCCTACTCACTTATTCTTTCACC GTGTAGCTGCCCAACGGGGCCTACTCACTTATTCTTTCACC < 41bp 1 0.467866621727636 1 0.0484136641025543 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB2A ENSG00000104388 CDS Human protein_coding chr8:61533362 chr8:61533344 synonymous SNV . 0 3 hm5C_associated_SNPs_30366 0 0 1 0 0 Ribosome 1 0.500231643918582 1 0.999536712162836 hm5C_site_30559 DeepMRMD:1;iRNA_m5C:0.999536712162836 30560 chr12 132334405 132334405 1 + C T MESO 132334394 + 132334374 132334414 41 ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCGACTTC ATAACGTAGAGGAAGGATACCCGCGCCCCGTTTCCGACTTC < 41bp 1 0.281753905477645 1 0.101599991321564 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334394 chr12:132334405 synonymous SNV . 0 32 hm5C_associated_SNPs_30367 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30560 DeepMRMD:1;iRNA_m5C:0.999536712157815 30561 chr17 37074996 37074996 1 + G A MESO 37075006 + 37074986 37075026 41 CGGCGACACGGGGATGCTGCCGGCCAACTACGTGGAGGCCA CGGCGACACGAGGATGCTGCCGGCCAACTACGTGGAGGCCA < 41bp 1 0.626498794860752 1 0.543797850608826 experiment 0.747002410278495 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37075006 chr17:37074996 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_30368 0 0 1 0 0 Cytosol 1 0.500231643904183 0.912404298782348 0.999536712191634 hm5C_site_30561 DeepMRMD:0.912404298782348;iRNA_m5C:0.999536712191634 30562 chr6 1390647 1390647 1 + C G MESO 1390666 + 1390646 1390686 41 ACGAGTGCTTCATCAAGCTGCCTAAGGGCCTCGGGCGGCCC AGGAGTGCTTCATCAAGCTGCCTAAGGGCCTCGGGCGGCCC < 41bp 1 0.129269572578317 1 0.193350046873093 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1390666 chr6:1390647 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_30369 0 0 1 0 0 exosome 1 0.500231643921073 1 0.999536712157853 hm5C_site_30562 DeepMRMD:1;iRNA_m5C:0.999536712157853 30563 chr6 43153914 43153914 1 + C A MESO 43153923 + 43153903 43153943 41 CGGAACCTCAGCGAACAGGGCATGTCACCTCCCCGGCCAAC CGGAACCTCAGAGAACAGGGCATGTCACCTCCCCGGCCAAC < 41bp 1 0.149004349683802 1 0.129186511039734 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43153923 chr6:43153914 nonsynonymous SNV 0.078 1 12 hm5C_associated_SNPs_30370 0 0 1 0 0 chromatin 1 0.496576877979793 1 1 hm5C_site_30563 DeepMRMD:1;iRNA_m5C:1 30564 chr2 207636934 207636934 1 + A G MESO 207636939 + 207636919 207636959 41 TGTCCTTTAAGAATAATGATCAACATATTGCAGTCCTGCAA TGTCCTTTAAGAATAGTGATCAACATATTGCAGTCCTGCAA < 41bp 1 0.663559016999133 1 0.418241441249847 experiment 0.672881966001735 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207636939 chr2:207636934 nonsynonymous SNV 0.951 1 16 hm5C_associated_SNPs_30371 0 0 1 0 1 Nucleus 1 0.500249909715443 1 0.999500180569115 hm5C_site_30564 DeepMRMD:1;iRNA_m5C:0.999500180569115 30565 chr17 48551148 48551148 1 + C T MESO 48551147 + 48551127 48551167 41 AGGACTTCTTTCACACACACCCGAAGGTGCAGGAAGTGCAG AGGACTTCTTTCACACACACCTGAAGGTGCAGGAAGTGCAG < 41bp 1 0.6772742261827 1 0.325710594654083 experiment 0.645451547634601 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48551147 chr17:48551148 nonsynonymous SNV 0.959 3 22 hm5C_associated_SNPs_30372 0 0 0 0 1 Endoplasmic reticulum 1 0.500230710564928 1 0.999538578870143 hm5C_site_30565 DeepMRMD:1;iRNA_m5C:0.999538578870143 30566 chr5 145641108 145641108 1 + C A MESO 145641091 + 145641071 145641111 41 AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAA AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATACAA < 41bp 1 0.397710370227993 1 0.438653737306595 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641091 chr5:145641108 synonymous SNV . 0 38 hm5C_associated_SNPs_30373 0 0 1 0 1 Nucleus 1 0.500231718062353 1 0.999536563875294 hm5C_site_30566 DeepMRMD:1;iRNA_m5C:0.999536563875294 30567 chr19 6746056 6746056 1 + T C MESO 6746043 + 6746023 6746063 41 CCGGCCCCCGCCGGTAGCCTCGCCCCCCACCCCTCTCCCCC CCGGCCCCCGCCGGTAGCCTCGCCCCCCACCCCCCTCCCCC < 41bp 1 0.498194861737618 1 0.510723471641541 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6746043 chr19:6746056 nonsynonymous SNV 0.986 1 34 hm5C_associated_SNPs_30374 0 0 1 0 1 Ribosome 1 0.500231643921092 0.978553056716918 0.999536712157815 hm5C_site_30567 DeepMRMD:0.978553056716918;iRNA_m5C:0.999536712157815 30568 chr11 65838073 65838073 1 + A C MESO 65838090 + 65838070 65838110 41 AGCAGCAGCCGCCGCAGCAGCCGACGCCCCCCAAGCTGGCC AGCCGCAGCCGCCGCAGCAGCCGACGCCCCCCAAGCTGGCC < 41bp 1 0.252198494358839 1 0.725180864334106 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65838090 chr11:65838073 nonsynonymous SNV 0.529 0 4 hm5C_associated_SNPs_30375 0 0 0 0 0 Cytosol 1 0.500231643952937 0.549638271331788 0.999536712094127 hm5C_site_30568 DeepMRMD:0.549638271331788;iRNA_m5C:0.999536712094127 30569 chr8 121301876 121301876 1 + C G MESO 121301861 + 121301841 121301881 41 ACCTAGCTACACATTGTTGTCAGTGAGACTTTGGTCAAAGT ACCTAGCTACACATTGTTGTCAGTGAGACTTTGGTGAAAGT < 41bp 1 0.168534773972143 1 0.137834489345551 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121301861 chr8:121301876 synonymous SNV . 0 36 hm5C_associated_SNPs_30376 0 0 0 0 1 Ribosome 1 0.500231635196214 1 0.999536729607573 hm5C_site_30569 DeepMRMD:1;iRNA_m5C:0.999536729607573 30570 chr4 123814171 123814171 1 + C A MESO 123814174 - 123814154 123814194 41 AGTGGATGGATCTCAATGACCTGGCGAAGACTGAAAATACA AGTGGATGGATCTCAATGACCTGTCGAAGACTGAAAATACA < 41bp 1 0.277708569859443 1 0.134845376014709 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT6 ENSG00000170917 CDS Human protein_coding chr4:123814174 chr4:123814171 nonsynonymous SNV 0.105 1 24 hm5C_associated_SNPs_30378 0 0 1 0 0 Ribosome 1 0.500233675930639 1 0.999532648138722 hm5C_site_30570 DeepMRMD:1;iRNA_m5C:0.999532648138722 30571 chr20 4163343 4163343 1 + G T MESO 4163341 + 4163321 4163361 41 TACCCACCTGAGCTCTGGTACCGCAAGATCTGCGGCTTTGA TACCCACCTGAGCTCTGGTACCTCAAGATCTGCGGCTTTGA < 41bp 1 0.103419594703086 1 0.0566852390766144 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMOX ENSG00000088826 CDS Human protein_coding chr20:4163341 chr20:4163343 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_30379 0 0 0 0 0 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_30571 DeepMRMD:1;iRNA_m5C:0.999536712157808 30572 chr16 69951761 69951761 1 + A T MESO 69951752 + 69951732 69951772 41 GCGGAATCAGCTCCAGGGGGCCATGCAGCACTTCAGCCAAA GCGGAATCAGCTCCAGGGGGCCATGCAGCTCTTCAGCCAAA < 41bp 1 0.0505363522023659 1 0.0502464175224304 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control WWP2 ENSG00000198373 CDS Human protein_coding chr16:69951752 chr16:69951761 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_30380 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30572 DeepMRMD:1;iRNA_m5C:0.999536712157815 30573 chr3 38180282 38180282 1 + C T MESO 38180279 + 38180259 38180299 41 CTGCTCTCAACATGCGAGTGCGGCGCCGCCTGTCTCTGTTC CTGCTCTCAACATGCGAGTGCGGTGCCGCCTGTCTCTGTTC < 41bp 1 0.4126673920943 1 0.29258394241333 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYD88 ENSG00000172936 CDS Human protein_coding chr3:38180279 chr3:38180282 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_30381 0 0 1 0 0 Ribosome 1 0.500231644750354 1 0.999536710499291 hm5C_site_30573 DeepMRMD:1;iRNA_m5C:0.999536710499291 30574 chr3 38180282 38180282 1 + C T MESO 38180284 + 38180264 38180304 41 CTCAACATGCGAGTGCGGCGCCGCCTGTCTCTGTTCTTGAA CTCAACATGCGAGTGCGGTGCCGCCTGTCTCTGTTCTTGAA < 41bp 1 0.152856100918088 1 0.329364836215973 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MYD88 ENSG00000172936 CDS Human protein_coding chr3:38180284 chr3:38180282 nonsynonymous SNV 0.997 3 19 hm5C_associated_SNPs_30382 0 0 1 0 0 Ribosome 1 0.500229776041481 1 0.999540447917037 hm5C_site_30574 DeepMRMD:1;iRNA_m5C:0.999540447917037 30575 chr3 38180281 38180281 1 + G T MESO 38180279 + 38180259 38180299 41 CTGCTCTCAACATGCGAGTGCGGCGCCGCCTGTCTCTGTTC CTGCTCTCAACATGCGAGTGCGTCGCCGCCTGTCTCTGTTC < 41bp 1 0.26877534432986 1 0.0562611520290375 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYD88 ENSG00000172936 CDS Human protein_coding chr3:38180279 chr3:38180281 synonymous SNV . 0 23 hm5C_associated_SNPs_30384 0 0 1 0 0 Ribosome 1 0.500231540672714 1 0.999536918654572 hm5C_site_30575 DeepMRMD:1;iRNA_m5C:0.999536918654572 30576 chr3 38180281 38180281 1 + G T MESO 38180284 + 38180264 38180304 41 CTCAACATGCGAGTGCGGCGCCGCCTGTCTCTGTTCTTGAA CTCAACATGCGAGTGCGTCGCCGCCTGTCTCTGTTCTTGAA < 41bp 1 0.209311318384919 1 0.223125547170639 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MYD88 ENSG00000172936 CDS Human protein_coding chr3:38180284 chr3:38180281 synonymous SNV . 0 18 hm5C_associated_SNPs_30385 0 0 1 0 0 Ribosome 1 0.500231628070849 1 0.999536743858302 hm5C_site_30576 DeepMRMD:1;iRNA_m5C:0.999536743858302 30577 chr16 2511180 2511180 1 + C T MESO 2511197 + 2511177 2511217 41 CATCCGCTGCTCCTCAGGCCCCAGAAGCCTTCACACTCAAG CATTCGCTGCTCCTCAGGCCCCAGAAGCCTTCACACTCAAG < 41bp 1 0.263935222288914 1 0.28046703338623 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2511197 chr16:2511180 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_30386 0 0 0 0 1 Ribosome 1 0.500231643921617 1 0.999536712156767 hm5C_site_30577 DeepMRMD:1;iRNA_m5C:0.999536712156767 30578 chr19 39899025 39899025 1 + G A MESO 39899016 + 39898996 39899036 41 TCTCGCCCTCCAGCTCCCCACCACCACCTGGGGACCTTCCA TCTCGCCCTCCAGCTCCCCACCACCACCTAGGGACCTTCCA < 41bp 1 0.11536148071724 1 0.157152563333511 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZFP36 ENSG00000128016 CDS Human protein_coding chr19:39899016 chr19:39899025 nonsynonymous SNV 0.996 2 30 hm5C_associated_SNPs_30387 0 0 1 0 0 nucleus 1 0.500231643918272 1 0.999536712163456 hm5C_site_30578 DeepMRMD:1;iRNA_m5C:0.999536712163456 30579 chr19 58772963 58772963 1 + C T MESO 58772944 + 58772924 58772964 41 AGAAGTGGCCCTGGAGAGACCCCCTTCAGATGTGAGGAACG AGAAGTGGCCCTGGAGAGACCCCCTTCAGATGTGAGGAATG < 41bp 1 0.261003985073684 1 0.156626015901566 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58772944 chr19:58772963 nonsynonymous SNV 0.000 0 40 hm5C_associated_SNPs_30388 0 0 1 0 1 chromatin 1 0.500231643920979 1 0.999536712158043 hm5C_site_30579 DeepMRMD:1;iRNA_m5C:0.999536712158043 30580 chr1 22336262 22336262 1 + C T MESO 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCACGGTGTGATCAGCTTTGTTTCTGCCTTTGGCTG < 41bp 1 0.170501037529515 1 0.0690505802631378 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336262 nonsynonymous SNV 0.977 4 17 hm5C_associated_SNPs_30390 0 0 0 0 1 Endoplasmic reticulum 1 0.500231501516875 1 0.99953699696625 hm5C_site_30580 DeepMRMD:1;iRNA_m5C:0.99953699696625 30581 chr1 22336262 22336262 1 + C T MESO 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA CGGTGTGATCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA < 41bp 1 0.585367014865942 1 0.0718128979206085 experiment 0.829265970268116 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336262 nonsynonymous SNV 0.977 4 9 hm5C_associated_SNPs_30391 0 0 0 0 1 Endoplasmic reticulum 1 0.500239485897962 1 0.999521028204075 hm5C_site_30581 DeepMRMD:1;iRNA_m5C:0.999521028204075 30582 chr1 22336262 22336262 1 + C T MESO 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGATCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT < 41bp 1 0.0482196429142676 1 0.017286479473114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336262 nonsynonymous SNV 0.977 4 6 hm5C_associated_SNPs_30392 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30582 DeepMRMD:1;iRNA_m5C:0.999536712157815 30583 chr1 22336262 22336262 1 + C T MESO 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGATCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG < 41bp 1 0.302678057370638 1 0.0775282084941864 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336262 nonsynonymous SNV 0.977 4 5 hm5C_associated_SNPs_30393 0 0 0 0 1 Endoplasmic reticulum 1 0.500427766683502 1 0.999144466632996 hm5C_site_30583 DeepMRMD:1;iRNA_m5C:0.999144466632996 30584 chr9 135946636 135946636 1 + C T MESO 135946619 + 135946599 135946639 41 CGTGCCCCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGC CGTGCCCCCCACGGGTGACTCCGAGACCGCCCCCGTGTCGC < 41bp 1 0.660310830225865 1 0.726034760475159 experiment 0.67937833954827 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946619 chr9:135946636 nonsynonymous SNV 0.000 1 38 hm5C_associated_SNPs_30396 0 0 0 0 0 exosome 1 0.500231643921087 0.547930479049682 0.999536712157826 hm5C_site_30584 DeepMRMD:0.547930479049682;iRNA_m5C:0.999536712157826 30585 chr9 135946636 135946636 1 + C T MESO 135946625 + 135946605 135946645 41 CCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGG CCCCACGGGTGACTCCGAGACCGCCCCCGTGTCGCCCACGG < 41bp 1 0.322809231046176 1 0.413611650466919 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946625 chr9:135946636 nonsynonymous SNV 0.000 1 32 hm5C_associated_SNPs_30397 0 0 0 0 0 exosome 1 0.500231644328028 1 0.999536711343943 hm5C_site_30585 DeepMRMD:1;iRNA_m5C:0.999536711343943 30586 chr9 135946636 135946636 1 + C T MESO 135946626 + 135946606 135946646 41 CCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGG CCCACGGGTGACTCCGAGACCGCCCCCGTGTCGCCCACGGG < 41bp 1 0.44002753987953 1 0.298570454120636 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946626 chr9:135946636 nonsynonymous SNV 0.000 1 31 hm5C_associated_SNPs_30398 0 0 0 0 0 exosome 1 0.500231644386385 1 0.999536711227231 hm5C_site_30586 DeepMRMD:1;iRNA_m5C:0.999536711227231 30587 chr2 220502417 220502417 1 + C T MESO 220502432 + 220502412 220502452 41 GCCCCCCCAGCCCGAGGAACCAGCCCAATACGGCACTGCTC GCCCCTCCAGCCCGAGGAACCAGCCCAATACGGCACTGCTC < 41bp 1 0.41617089038451 1 0.704183578491211 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220502432 chr2:220502417 nonsynonymous SNV 0.008 0 6 hm5C_associated_SNPs_30399 0 0 0 0 0 Cytosol 1 0.500231643921092 0.591632843017578 0.999536712157815 hm5C_site_30587 DeepMRMD:0.591632843017578;iRNA_m5C:0.999536712157815 30588 chr17 60768383 60768383 1 + C T MESO 60768363 + 60768343 60768383 41 TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGC TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGT < 41bp 1 0.0265555477537032 1 0.165976941585541 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768363 chr17:60768383 synonymous SNV . 0 41 hm5C_associated_SNPs_30400 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30588 DeepMRMD:1;iRNA_m5C:0.999536712157815 30589 chr17 60768383 60768383 1 + C T MESO 60768364 + 60768344 60768384 41 GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCA GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGTA < 41bp 1 0.139997938090884 1 0.552106618881226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768364 chr17:60768383 synonymous SNV . 0 40 hm5C_associated_SNPs_30401 0 0 1 0 1 Cytosol 1 0.500231643921092 0.895786762237548 0.999536712157815 hm5C_site_30589 DeepMRMD:0.895786762237548;iRNA_m5C:0.999536712157815 30590 chr17 60768383 60768383 1 + C T MESO 60768365 + 60768345 60768385 41 AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCAT AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGTAT < 41bp 1 0.22061854624745 1 0.760306835174561 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768365 chr17:60768383 synonymous SNV . 0 39 hm5C_associated_SNPs_30402 0 0 1 0 1 Cytosol 1 0.500231643921089 0.479386329650878 0.999536712157822 hm5C_site_30590 DeepMRMD:0.479386329650878;iRNA_m5C:0.999536712157822 30591 chr17 60768383 60768383 1 + C T MESO 60768377 + 60768357 60768397 41 TGGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAA TGGGGGCCCCCGGGCTTGGGCCCCAGTATGCTGAGCCACAA < 41bp 1 0.484420377853201 1 0.176840007305145 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768377 chr17:60768383 synonymous SNV . 0 27 hm5C_associated_SNPs_30403 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30591 DeepMRMD:1;iRNA_m5C:0.999536712157815 30592 chr17 60768383 60768383 1 + C T MESO 60768378 + 60768358 60768398 41 GGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAAC GGGGGCCCCCGGGCTTGGGCCCCAGTATGCTGAGCCACAAC < 41bp 1 0.162746930446427 1 0.224860161542892 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768378 chr17:60768383 synonymous SNV . 0 26 hm5C_associated_SNPs_30404 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30592 DeepMRMD:1;iRNA_m5C:0.999536712157815 30593 chr17 60768383 60768383 1 + C T MESO 60768379 + 60768359 60768399 41 GGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACA GGGGCCCCCGGGCTTGGGCCCCAGTATGCTGAGCCACAACA < 41bp 1 0.114618843866322 1 0.249751776456833 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768379 chr17:60768383 synonymous SNV . 0 25 hm5C_associated_SNPs_30405 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30593 DeepMRMD:1;iRNA_m5C:0.999536712157815 30594 chr17 60768383 60768383 1 + C T MESO 60768380 + 60768360 60768400 41 GGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAG GGGCCCCCGGGCTTGGGCCCCAGTATGCTGAGCCACAACAG < 41bp 1 0.430530160741348 1 0.398550450801849 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768380 chr17:60768383 synonymous SNV . 0 24 hm5C_associated_SNPs_30406 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_30594 DeepMRMD:1;iRNA_m5C:0.999536712157813 30595 chr11 73360064 73360064 1 + C T MESO 73360060 + 73360040 73360080 41 CGTGGCTCCTCTGACAGGTCCCGCCTGACTCCGCTCTGGAA CGTGGCTCCTCTGACAGGTCCCGCTTGACTCCGCTCTGGAA < 41bp 1 0.1449712076155 1 0.0519609153270721 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHB1 ENSG00000021300 CDS Human protein_coding chr11:73360060 chr11:73360064 nonsynonymous SNV 0.891 1 25 hm5C_associated_SNPs_30407 0 0 1 0 1 membrane 1 0.500226848247174 1 0.999546303505652 hm5C_site_30595 DeepMRMD:1;iRNA_m5C:0.999546303505652 30596 chr21 47978253 47978253 1 + C T MESO 47978252 + 47978232 47978272 41 AAGGACCTGGGCCTGCCGGCCCGCGCCGTAAGCACCACGTT AAGGACCTGGGCCTGCCGGCCTGCGCCGTAAGCACCACGTT < 41bp 1 0.555143702890129 1 0.767519235610962 experiment 0.889712594219741 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47978252 chr21:47978253 nonsynonymous SNV 0.131 4 22 hm5C_associated_SNPs_30408 0 0 1 0 1 Cytosol 1 0.500231644776511 0.464961528778076 0.999536710446978 hm5C_site_30596 DeepMRMD:0.464961528778076;iRNA_m5C:0.999536710446978 30597 chr2 121554980 121554980 1 + G A MESO 121554962 + 121554942 121554982 41 AAAAGTGGGATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG AAAAGTGGGATCCTGGAGGCCGCTGGCTTCCCCGACCCAGG < 41bp 1 0.275873159530938 1 0.516095757484436 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLI2 ENSG00000074047 CDS Human protein_coding chr2:121554962 chr2:121554980 synonymous SNV . 0 39 hm5C_associated_SNPs_30409 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.967808485031128 0.999536712157815 hm5C_site_30597 DeepMRMD:0.967808485031128;iRNA_m5C:0.999536712157815 30598 chr22 44335969 44335969 1 + C T MESO 44335988 + 44335968 44336008 41 ACCCTGCCTGTGGAATCTGCCATTGCGATTGTCCAGAGGTG ATCCTGCCTGTGGAATCTGCCATTGCGATTGTCCAGAGGTG < 41bp 1 0.133464342183967 1 0.105139762163162 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44335988 chr22:44335969 nonsynonymous SNV 0.291 2 2 hm5C_associated_SNPs_30410 0 0 1 0 2 cytosol 1 0.500229693911159 1 0.999540612177681 hm5C_site_30598 DeepMRMD:1;iRNA_m5C:0.999540612177681 30599 chr10 115485156 115485156 1 + G A OV 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATACAAATGCCGCCTGCTTCACCTGCATCC < 41bp 1 0.23542097786475 1 0.107437163591385 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485156 nonsynonymous SNV 0.996 3 32 hm5C_associated_SNPs_30411 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30599 DeepMRMD:1;iRNA_m5C:0.999536712157815 30600 chr17 80193916 80193916 1 + C A OV 80193913 + 80193893 80193933 41 GGCCGTGGTGGACGAGGGCCCCACAGGCGTCAAGGCCCCTG GGCCGTGGTGGACGAGGGCCCCAAAGGCGTCAAGGCCCCTG < 41bp 1 0.574131888896664 1 0.156770437955856 experiment 0.851736222206673 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC16A3 ENSG00000141526 CDS Human protein_coding chr17:80193913 chr17:80193916 nonsynonymous SNV 0.732 0 24 hm5C_associated_SNPs_30412 0 0 1 0 1 Ribosome 1 0.500231643921107 1 0.999536712157786 hm5C_site_30600 DeepMRMD:1;iRNA_m5C:0.999536712157786 30601 chr8 104342099 104342099 1 + G A OV 104342108 + 104342088 104342128 41 CAAGAAACTTTGACAGAAATCCAAACCTCACCAGAAACATC CAAGAAACTTTAACAGAAATCCAAACCTCACCAGAAACATC < 41bp 1 0.286396302037432 1 0.0900390446186066 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104342108 chr8:104342099 synonymous SNV . 0 12 hm5C_associated_SNPs_30414 0 0 1 0 0 Ribosome 1 0.500231643918259 1 0.999536712163481 hm5C_site_30601 DeepMRMD:1;iRNA_m5C:0.999536712163481 30602 chr4 183696221 183696221 1 + G A OV 183696207 + 183696187 183696227 41 CCGACGGTTGCCAAAAGAAACATGACTTTGCCTGGCGAGAA CCGACGGTTGCCAAAAGAAACATGACTTTGCCTGACGAGAA < 41bp 1 0.346840837161249 1 0.16728475689888 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183696207 chr4:183696221 nonsynonymous SNV 0.934 2 35 hm5C_associated_SNPs_30415 0 0 1 0 0 nucleus 1 0.500231643921162 1 0.999536712157675 hm5C_site_30602 DeepMRMD:1;iRNA_m5C:0.999536712157675 30603 chr10 31812925 31812925 1 + C G OV 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA GAATGACTCTGATTGTACACCGCCCAAAAAGAAAATGCGGA < 41bp 1 0.24428328660392 1 0.234968155622482 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812925 nonsynonymous SNV 0.999 0 15 hm5C_associated_SNPs_30417 0 0 0 0 1 Nucleus 1 0.500231657713078 1 0.999536684573844 hm5C_site_30603 DeepMRMD:1;iRNA_m5C:0.999536684573844 30604 chr12 53433463 53433463 1 + A G OV 53433478 + 53433458 53433498 41 CAAAGAAACCTGAGGAAAATCCAGCTTCCGTAAGTGTTGAA CAAAGGAACCTGAGGAAAATCCAGCTTCCGTAAGTGTTGAA < 41bp 1 0.290324728177156 1 0.305705666542053 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433478 chr12:53433463 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_30418 0 0 0 0 2 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_30604 DeepMRMD:1;iRNA_m5C:0.999536712157813 30605 chr7 44804967 44804967 1 + G A OV 44804952 + 44804932 44804972 41 AGCTCTGACTATGAGGAGATCACCATCGACCCCACGTGCAG AGCTCTGACTATGAGGAGATCACCATCGACCCCACATGCAG < 41bp 1 0.635171244689567 1 0.067868560552597 experiment 0.729657510620866 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44804952 chr7:44804967 synonymous SNV . 0 36 hm5C_associated_SNPs_30419 0 0 1 0 1 Cytosol 1 0.500231644003698 1 0.999536711992604 hm5C_site_30605 DeepMRMD:1;iRNA_m5C:0.999536711992604 30606 chr20 60708486 60708486 1 + C G OV 60708483 + 60708463 60708503 41 TGGGACCACCCGTCGCAACCCCACTTCCCACAGGGCCGGGA TGGGACCACCCGTCGCAACCCCAGTTCCCACAGGGCCGGGA < 41bp 1 0.487450203522708 1 0.069589763879776 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60708483 chr20:60708486 nonsynonymous SNV 0.990 0 24 hm5C_associated_SNPs_30420 0 0 1 0 1 Ribosome 1 0.500231643921086 1 0.999536712157828 hm5C_site_30606 DeepMRMD:1;iRNA_m5C:0.999536712157828 30607 chr17 78081608 78081608 1 + A T OV 78081601 + 78081581 78081621 41 GTCTCCTGCATGTCCCAGCCCGGTGCGAACCTCTACGGGTC GTCTCCTGCATGTCCCAGCCCGGTGCGTACCTCTACGGGTC < 41bp 1 0.493043692933063 1 0.441283524036407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78081601 chr17:78081608 nonsynonymous SNV 0.651 5 28 hm5C_associated_SNPs_30421 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30607 DeepMRMD:1;iRNA_m5C:0.999536712157815 30608 chr11 45827584 45827584 1 + T G OV 45827586 + 45827566 45827606 41 ACCCCCATCTTCGTCACCTTCTACCAGTGCCTGGTGACCAC ACCCCCATCTTCGTCACCGTCTACCAGTGCCTGGTGACCAC < 41bp 1 0.365441037028525 1 0.109261393547058 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC35C1 ENSG00000181830 CDS Human protein_coding chr11:45827586 chr11:45827584 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_30422 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921068 1 0.999536712157864 hm5C_site_30608 DeepMRMD:1;iRNA_m5C:0.999536712157864 30609 chr17 37676222 37676222 1 + G A OV 37676240 + 37676220 37676260 41 CAGCACTTGATTTATTGGACCACATGCTGACACTAGATCCT CAACACTTGATTTATTGGACCACATGCTGACACTAGATCCT < 41bp 1 0.125709013427674 1 0.0368230938911438 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676240 chr17:37676222 nonsynonymous SNV 0.998 4 3 hm5C_associated_SNPs_30423 0 0 1 0 1 Nucleus 1 0.50023164405292 1 0.99953671189416 hm5C_site_30609 DeepMRMD:1;iRNA_m5C:0.99953671189416 30610 chr3 124456804 124456804 1 + C G OV 124456785 + 124456765 124456805 41 GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGCC GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGGC < 41bp 1 0.386503877125159 1 0.779657959938049 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UMPS ENSG00000114491 CDS Human protein_coding chr3:124456785 chr3:124456804 nonsynonymous SNV 0.990 1 40 hm5C_associated_SNPs_30424 0 0 1 0 1 Ribosome 1 0.500231644357413 0.440684080123902 0.999536711285173 hm5C_site_30610 DeepMRMD:0.440684080123902;iRNA_m5C:0.999536711285173 30611 chr22 39770463 39770463 1 + C A OV 39770450 + 39770430 39770470 41 ATGGCGTGGCCGTGGGCGTGCTCGCCTTCCTCACCTGCCTG ATGGCGTGGCCGTGGGCGTGCTCGCCTTCCTCAACTGCCTG < 41bp 1 0.541026042730758 1 0.102213442325592 experiment 0.917947914538483 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNGR1 ENSG00000100321 CDS Human protein_coding chr22:39770450 chr22:39770463 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_30425 0 0 1 0 1 Endoplasmic reticulum 1 0.500231641290308 1 0.999536717419384 hm5C_site_30611 DeepMRMD:1;iRNA_m5C:0.999536717419384 30612 chr8 123965552 123965552 1 + G C OV 123965569 + 123965549 123965589 41 AAGGCCAAGATGTGGGAGCCCCCAATGGTGCTCTGTCTCGA AAGCCCAAGATGTGGGAGCCCCCAATGGTGCTCTGTCTCGA < 41bp 1 0.515539465784572 1 0.720773279666901 experiment 0.968921068430856 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZHX2 ENSG00000178764 CDS Human protein_coding chr8:123965569 chr8:123965552 nonsynonymous SNV 0.417 0 4 hm5C_associated_SNPs_30426 0 0 0 0 0 Nucleus 1 0.500231643892385 0.558453440666198 0.999536712215231 hm5C_site_30612 DeepMRMD:0.558453440666198;iRNA_m5C:0.999536712215231 30613 chr1 153724880 153724880 1 + C T OV 153724860 + 153724840 153724880 41 AAGATATTATCCATAATCCTCAGGCCTTGAGTCCTCAGTTC AAGATATTATCCATAATCCTCAGGCCTTGAGTCCTCAGTTT < 41bp 1 0.583441973944019 1 0.801113128662109 experiment 0.833116052111963 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout INTS3 ENSG00000143624 CDS Human protein_coding chr1:153724860 chr1:153724880 synonymous SNV . 0 41 hm5C_associated_SNPs_30427 0 0 1 0 1 chromatin 1 0.500231641643438 0.397773742675782 0.999536716713124 hm5C_site_30613 DeepMRMD:0.397773742675782;iRNA_m5C:0.999536716713124 30614 chr12 95877020 95877020 1 + G A OV 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGCGATGGAGATGGAGCAACTAGAAAGAAGAAGAAAA < 41bp 1 0.299057713578877 1 0.321467399597168 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877020 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_30429 0 0 1 1 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30614 DeepMRMD:1;iRNA_m5C:0.999536712157815 30615 chr3 49049428 49049428 1 + G A OV 49049444 + 49049424 49049464 41 CCCTGCACAGACAGGTGCACCCTCTCTTCAGCCTGCCTGAT CCCTACACAGACAGGTGCACCCTCTCTTCAGCCTGCCTGAT < 41bp 1 0.0470454762027544 1 0.0386441946029663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR6 ENSG00000178252 CDS Human protein_coding chr3:49049444 chr3:49049428 nonsynonymous SNV 0.998 4 5 hm5C_associated_SNPs_30431 0 0 1 0 0 Nucleus 1 0.500231644009616 1 0.999536711980769 hm5C_site_30615 DeepMRMD:1;iRNA_m5C:0.999536711980769 30616 chr6 27806753 27806753 1 + G A OV 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCGTGCGCCTGCTGCTGCCAGAGGAGCTGGCCAAG < 41bp 1 0.606388363534348 1 0.259109437465668 experiment 0.787223272931303 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806753 nonsynonymous SNV 0.970 3 28 hm5C_associated_SNPs_30432 0 0 1 0 2 Ribosome 1 0.500231644251524 1 0.999536711496951 hm5C_site_30616 DeepMRMD:1;iRNA_m5C:0.999536711496951 30617 chr12 123087765 123087765 1 + C T OV 123087749 + 123087729 123087769 41 TATAGTCAACCCAGAGTGGGCTGTAGCTATTGCCATCAGCC TATAGTCAACCCAGAGTGGGCTGTAGCTATTGCCATTAGCC < 41bp 1 0.274374444707651 1 0.140263319015503 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123087749 chr12:123087765 synonymous SNV . 0 37 hm5C_associated_SNPs_30433 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30617 DeepMRMD:1;iRNA_m5C:0.999536712157815 30618 chr12 123087765 123087765 1 + C T OV 123087775 + 123087755 123087795 41 CTATTGCCATCAGCCTTGCCCAGGATATCCCTGAAGGTATG CTATTGCCATTAGCCTTGCCCAGGATATCCCTGAAGGTATG < 41bp 1 0.586275065351658 1 0.630870640277863 experiment 0.827449869296683 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123087775 chr12:123087765 synonymous SNV . 0 11 hm5C_associated_SNPs_30434 0 0 1 0 1 Nucleus 1 0.500231643921092 0.738258719444274 0.999536712157815 hm5C_site_30618 DeepMRMD:0.738258719444274;iRNA_m5C:0.999536712157815 30619 chr19 10406148 10406148 1 + G A OV 10406135 + 10406115 10406155 41 CTCCAGCCCAGATCAGCTGGCGCGCGCCCCCGGGGGCCCTC CTCCAGCCCAGATCAGCTGGCGCGCGCCCCCGGAGGCCCTC < 41bp 1 0.366454954053085 1 0.474630355834961 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10406135 chr19:10406148 nonsynonymous SNV 0.983 4 34 hm5C_associated_SNPs_30435 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30619 DeepMRMD:1;iRNA_m5C:0.999536712157815 30620 chr20 57484839 57484839 1 + C G OV 57484828 + 57484808 57484848 41 CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC CCAACCGCCTGCAGGAGGCTCTGAACCTCTTGAAGAGCATC < 41bp 1 0.394029923604322 1 0.164883702993393 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNAS ENSG00000087460 CDS Human protein_coding chr20:57484828 chr20:57484839 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_30436 0 0 1 0 1 Cytosol 1 0.500231643921219 1 0.999536712157562 hm5C_site_30620 DeepMRMD:1;iRNA_m5C:0.999536712157562 30621 chr9 100412797 100412797 1 + C T OV 100412789 + 100412769 100412809 41 TTGGTTTTCTTTCCAGGGTCCTGTCATGCCAGGGAGTCATT TTGGTTTTCTTTCCAGGGTCCTGTCATGTCAGGGAGTCATT < 41bp 1 0.0647611231870696 1 0.0939666032791138 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100412789 chr9:100412797 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_30438 0 0 0 0 1 Nucleus 1 0.500231749758575 1 0.999536500482851 hm5C_site_30621 DeepMRMD:1;iRNA_m5C:0.999536500482851 30622 chr17 45757955 45757955 1 + G T OV 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGTCGGAGATCGAAGACTAACAAA < 41bp 1 0.493227770190292 1 0.348828375339508 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757955 synonymous SNV . 0 20 hm5C_associated_SNPs_30439 0 0 1 0 2 Cytosol 1 0.50023164392123 1 0.99953671215754 hm5C_site_30622 DeepMRMD:1;iRNA_m5C:0.99953671215754 30623 chr12 57552345 57552345 1 + C G OV 57552333 + 57552313 57552353 41 CTGGACTTCCACGCTGAGACCGGCTTCATCTACTTTGCCGA CTGGACTTCCACGCTGAGACCGGCTTCATCTAGTTTGCCGA < 41bp 1 0.117729867926037 1 0.430972397327423 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57552333 chr12:57552345 stopgain 1.000 1 33 hm5C_associated_SNPs_30440 0 0 1 0 1 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30623 DeepMRMD:1;iRNA_m5C:0.999536712157815 30624 chr12 98995251 98995251 1 + C A OV 98995269 + 98995249 98995289 41 CCCTCCTCCACCCGAGATGCCAGAGTCTCTGAAGAAGAAGC CCATCCTCCACCCGAGATGCCAGAGTCTCTGAAGAAGAAGC < 41bp 1 0.539408803231231 1 0.223956912755966 experiment 0.921182393537538 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98995269 chr12:98995251 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_30441 0 0 1 0 0 Ribosome 1 0.500231643918031 1 0.999536712163939 hm5C_site_30624 DeepMRMD:1;iRNA_m5C:0.999536712163939 30625 chr14 64689991 64689991 1 + G A OV 64690010 + 64689990 64690030 41 TGGAGAAGACTGTATTGAAGCTGAAGAAAAGGTGCATGTTA TAGAGAAGACTGTATTGAAGCTGAAGAAAAGGTGCATGTTA < 41bp 1 0.2709344923586 1 0.335269004106522 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64690010 chr14:64689991 nonsynonymous SNV 0.752 3 2 hm5C_associated_SNPs_30442 0 0 1 0 1 Nucleus 1 0.50023163401305 1 0.9995367319739 hm5C_site_30625 DeepMRMD:1;iRNA_m5C:0.9995367319739 30626 chr5 92921091 92921091 1 + C T OV 92921110 + 92921090 92921130 41 ACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCA ATATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCA < 41bp 1 0.0834607286244176 1 0.102384060621262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92921110 chr5:92921091 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_30443 0 0 1 0 0 nucleus 1 0.500231009616039 1 0.999537980767922 hm5C_site_30626 DeepMRMD:1;iRNA_m5C:0.999537980767922 30627 chr5 92921119 92921119 1 + C T OV 92921110 + 92921090 92921130 41 ACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCA ACATGCCGTGCCAACAGGAACTGTCCCATTGACCAGCACCA < 41bp 1 0.0759836856103022 1 0.172945290803909 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92921110 chr5:92921119 synonymous SNV . 0 30 hm5C_associated_SNPs_30444 0 0 1 0 1 nucleus 1 0.500231146983997 1 0.999537706032006 hm5C_site_30627 DeepMRMD:1;iRNA_m5C:0.999537706032006 30628 chr5 92921123 92921123 1 + C T OV 92921110 + 92921090 92921130 41 ACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCA ACATGCCGTGCCAACAGGAACTGTCCCATCGACTAGCACCA < 41bp 1 0.0862957267799983 1 0.173048168420792 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92921110 chr5:92921123 stopgain 1.000 1 34 hm5C_associated_SNPs_30445 0 0 1 0 1 nucleus 1 0.500231632625034 1 0.999536734749932 hm5C_site_30628 DeepMRMD:1;iRNA_m5C:0.999536734749932 30629 chr3 155629028 155629028 1 + T A OV 155629040 + 155629020 155629060 41 AGCCAGTCTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA AGCCAGTCAGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA < 41bp 1 0.108401072204845 1 0.0425854921340942 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155629040 chr3:155629028 synonymous SNV . 0 9 hm5C_associated_SNPs_30447 0 0 1 0 1 Nucleus 1 0.500231644262617 1 0.999536711474765 hm5C_site_30629 DeepMRMD:1;iRNA_m5C:0.999536711474765 30630 chr6 27861593 27861593 1 + C G OV 27861587 + 27861567 27861607 41 GCACGCCGTGTCCGAGGGCACAAAGGCCGTCACCAAGTACA GCACGCCGTGTCCGAGGGCACAAAGGGCGTCACCAAGTACA < 41bp 1 0.691776890753107 1 0.501249313354492 experiment 0.616446218493787 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HIST1H2BO ENSG00000196331 CDS Human other chr6:27861587 chr6:27861593 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_30448 0 0 1 0 0 exosome 1 0.500231643724861 0.997501373291016 0.999536712550278 hm5C_site_30630 DeepMRMD:0.997501373291016;iRNA_m5C:0.999536712550278 30631 chr16 81077192 81077192 1 + G T OV 81077198 + 81077178 81077218 41 GCTTGCTCTCTTAAGGAGAGCCTACCTCTTTTCAAAATTGC GCTTGCTCTCTTAATGAGAGCCTACCTCTTTTCAAAATTGC < 41bp 1 0.0143450679594221 1 0.0613050162792206 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81077198 chr16:81077192 nonsynonymous SNV 0.077 2 15 hm5C_associated_SNPs_30449 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_30631 DeepMRMD:1;iRNA_m5C:0.999536712157815 30632 chr22 24204383 24204383 1 + G A OV 24204381 + 24204361 24204401 41 ACCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTC ACCTCTCTATCATCAATGCCCCAACCTTGGTATGTATCCTC < 41bp 1 0.0449471952893063 1 0.03172367811203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460;ENSG00000251357 CDS Human other chr22:24204381 chr22:24204383 synonymous SNV . 0 23 hm5C_associated_SNPs_30450 0 0 0 0 2 nucleoplasm 1 0.500231644766229 1 0.999536710467543 hm5C_site_30632 DeepMRMD:1;iRNA_m5C:0.999536710467543 30633 chr22 24204383 24204383 1 + G A OV 24204382 + 24204362 24204402 41 CCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTCT CCTCTCTATCATCAATGCCCCAACCTTGGTATGTATCCTCT < 41bp 1 0.122581539827839 1 0.130829364061356 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460;ENSG00000251357 CDS Human other chr22:24204382 chr22:24204383 synonymous SNV . 0 22 hm5C_associated_SNPs_30451 0 0 0 0 2 nucleoplasm 1 0.500231643921063 1 0.999536712157874 hm5C_site_30633 DeepMRMD:1;iRNA_m5C:0.999536712157874 30634 chr22 24204383 24204383 1 + G A OV 24204386 + 24204366 24204406 41 TCTATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG TCTATCATCAATGCCCCAACCTTGGTATGTATCCTCTCTGG < 41bp 1 0.597535793507476 1 0.106708407402039 experiment 0.804928412985048 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460;ENSG00000251357 CDS Human other chr22:24204386 chr22:24204383 synonymous SNV . 0 18 hm5C_associated_SNPs_30452 0 0 0 0 2 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_30634 DeepMRMD:1;iRNA_m5C:0.999536712157815 30635 chr7 56129521 56129521 1 + G C OV 56129510 + 56129490 56129530 41 TCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGG TCAAGCAGAACATTCAGAATCAGGTCAGCTTCTGGGTGTGG < 41bp 1 0.575634430824163 1 0.443491965532303 experiment 0.848731138351674 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56129510 chr7:56129521 nonsynonymous SNV 0.994 0 32 hm5C_associated_SNPs_30453 0 0 1 0 2 Ribosome 1 0.500231643963923 1 0.999536712072155 hm5C_site_30635 DeepMRMD:1;iRNA_m5C:0.999536712072155 30636 chr1 145360574 145360574 1 + G C OV 145360594 + 145360574 145360614 41 GATGAGAAAGGGCCTGAAGTCTTGCAGGACTCACTGGATAG CATGAGAAAGGGCCTGAAGTCTTGCAGGACTCACTGGATAG < 41bp 1 0.138716407407292 1 0.112502425909042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBPF19 ENSG00000163386 CDS Human other chr1:145360594 chr1:145360574 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_30454 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_30636 DeepMRMD:1;iRNA_m5C:0.999536712157815 30637 chr8 56922484 56922484 1 + G A OV 56922491 + 56922471 56922511 41 AACTAATGCCGACGTGATGACCGCCCTGTCCCAGGGCTACA AACTAATGCCGACATGATGACCGCCCTGTCCCAGGGCTACA < 41bp 1 0.186081681612634 1 0.0170888304710388 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56922491 chr8:56922484 nonsynonymous SNV 0.823 5 14 hm5C_associated_SNPs_30455 0 0 1 0 1 Cytosol 1 0.500231643921509 1 0.999536712156983 hm5C_site_30637 DeepMRMD:1;iRNA_m5C:0.999536712156983 30638 chr6 168352576 168352576 1 + G A OV 168352591 + 168352571 168352611 41 TCCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGA TCCTCAGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGA < 41bp 1 0.177232331961597 1 0.288018554449081 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352591 chr6:168352576 synonymous SNV . 0 6 hm5C_associated_SNPs_30456 0 0 1 0 0 unknown 1 0.50023162015261 1 0.999536759694781 hm5C_site_30638 DeepMRMD:1;iRNA_m5C:0.999536759694781 30639 chr6 168352576 168352576 1 + G A OV 168352592 + 168352572 168352612 41 CCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGAC CCTCAGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGAC < 41bp 1 0.526644706991871 1 0.490777850151062 experiment 0.946710586016257 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352592 chr6:168352576 synonymous SNV . 0 5 hm5C_associated_SNPs_30457 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_30639 DeepMRMD:1;iRNA_m5C:0.999536712157815 30640 chr6 168352576 168352576 1 + G A OV 168352593 + 168352573 168352613 41 CTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGACG CTCAGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGACG < 41bp 1 0.0704065678155607 1 0.272766053676605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352593 chr6:168352576 synonymous SNV . 0 4 hm5C_associated_SNPs_30458 0 0 1 0 0 unknown 1 0.500231639034975 1 0.99953672193005 hm5C_site_30640 DeepMRMD:1;iRNA_m5C:0.99953672193005 30641 chr2 177015082 177015082 1 + G T OV 177015069 + 177015049 177015089 41 TCTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCGT TCTATATATACCCTGTAGAACCGAATTTGTGTGTTATCCGT < 41bp 1 0.630912902632524 1 0.0454921722412109 experiment 0.738174194734951 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015069 chr2:177015082 . . 0 34 hm5C_associated_SNPs_30459 0 0 1 0 0 unknown 1 0.500231643931098 1 0.999536712137805 hm5C_site_30641 DeepMRMD:1;iRNA_m5C:0.999536712137805 30642 chr2 177015082 177015082 1 + G T OV 177015070 + 177015050 177015090 41 CTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCGTA CTATATATACCCTGTAGAACCGAATTTGTGTGTTATCCGTA < 41bp 1 0.425655661947764 1 0.0922767817974091 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015070 chr2:177015082 . . 0 33 hm5C_associated_SNPs_30460 0 0 1 0 0 unknown 1 0.500231643783423 1 0.999536712433155 hm5C_site_30642 DeepMRMD:1;iRNA_m5C:0.999536712433155 30643 chr7 91714873 91714873 1 + G A OV 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAATGA < 41bp 1 0.393096828397151 1 0.157437860965729 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714873 nonsynonymous SNV 0.508 0 38 hm5C_associated_SNPs_30461 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30643 DeepMRMD:1;iRNA_m5C:0.999536712157815 30644 chr7 91714873 91714873 1 + G A OV 91714864 + 91714844 91714884 41 GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG GGTGCTTTCTCTCACTGAGTCTCCCTATAATGATGGAGAGG < 41bp 1 0.201802041452805 1 0.290240287780762 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714864 chr7:91714873 nonsynonymous SNV 0.508 0 30 hm5C_associated_SNPs_30462 0 0 0 0 1 Nucleus 1 0.500231643921108 1 0.999536712157784 hm5C_site_30644 DeepMRMD:1;iRNA_m5C:0.999536712157784 30645 chr7 91714873 91714873 1 + G A OV 91714867 + 91714847 91714887 41 GCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACC GCTTTCTCTCACTGAGTCTCCCTATAATGATGGAGAGGACC < 41bp 1 0.0173478646141424 1 0.0839990675449371 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714867 chr7:91714873 nonsynonymous SNV 0.508 0 27 hm5C_associated_SNPs_30463 0 0 0 0 1 Nucleus 1 0.500231653508866 1 0.999536692982268 hm5C_site_30645 DeepMRMD:1;iRNA_m5C:0.999536692982268 30646 chr7 91714873 91714873 1 + G A OV 91714868 + 91714848 91714888 41 CTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACCA CTTTCTCTCACTGAGTCTCCCTATAATGATGGAGAGGACCA < 41bp 1 0.192242900319195 1 0.24973052740097 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714868 chr7:91714873 nonsynonymous SNV 0.508 0 26 hm5C_associated_SNPs_30464 0 0 0 0 1 Nucleus 1 0.500231660386423 1 0.999536679227154 hm5C_site_30646 DeepMRMD:1;iRNA_m5C:0.999536679227154 30647 chr7 91714873 91714873 1 + G A OV 91714891 + 91714871 91714911 41 TAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAAC TAATGATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAAC < 41bp 1 0.187149025321248 1 0.158417612314224 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714891 chr7:91714873 nonsynonymous SNV 0.508 0 3 hm5C_associated_SNPs_30465 0 0 0 0 1 Nucleus 1 0.500231650175188 1 0.999536699649624 hm5C_site_30647 DeepMRMD:1;iRNA_m5C:0.999536699649624 30648 chr16 72141619 72141619 1 + C T OV 72141626 + 72141606 72141646 41 ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT ATGCTCATCGTGTTCTGTGACATGGGCTGCAGCTCCGAGAT < 41bp 1 0.689483317337063 1 0.286730527877808 experiment 0.621033365325875 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141626 chr16:72141619 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_30466 0 0 1 0 2 Cytosol 1 0.500231642751962 1 0.999536714496077 hm5C_site_30648 DeepMRMD:1;iRNA_m5C:0.999536714496077 30649 chr5 68425367 68425367 1 + G T OV 68425373 + 68425353 68425393 41 CTGGCCTAAGTACTGGATTTCATGATGTTCTGGCTATGACA CTGGCCTAAGTACTTGATTTCATGATGTTCTGGCTATGACA < 41bp 1 0.545547581300462 1 0.173624485731125 experiment 0.908904837399076 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68425373 chr5:68425367 stopgain 1.000 1 15 hm5C_associated_SNPs_30467 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_30649 DeepMRMD:1;iRNA_m5C:0.999536712157811 30650 chr17 7479928 7479928 1 + G A OV 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTAC < 41bp 1 0.12988419285194 1 0.158226490020752 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479928 synonymous SNV . 0 40 hm5C_associated_SNPs_30468 0 0 1 0 2 Cytosol 1 0.500231614165527 1 0.999536771668945 hm5C_site_30650 DeepMRMD:1;iRNA_m5C:0.999536771668945 30651 chr17 7479928 7479928 1 + G A OV 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTACA < 41bp 1 0.411052555360853 1 0.206307917833328 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479928 synonymous SNV . 0 39 hm5C_associated_SNPs_30469 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30651 DeepMRMD:1;iRNA_m5C:0.999536712157815 30652 chr8 22037887 22037887 1 + G T OV 22037894 + 22037874 22037914 41 CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCACAGGCAA CTCACAGCCTGTGTAGAGACCCTGCAAGACAGCACAGGCAA < 41bp 1 0.0883009039517002 1 0.0991290807723999 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037894 chr8:22037887 nonsynonymous SNV 0.982 3 14 hm5C_associated_SNPs_30470 0 0 1 1 1 Endoplasmic reticulum 1 0.500282584269712 1 0.999434831460576 hm5C_site_30652 DeepMRMD:1;iRNA_m5C:0.999434831460576 30653 chr9 6498130 6498130 1 + G A OV 6498113 + 6498093 6498133 41 GTTGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACGGTC GTTGAACCTGCTCCTTGGACCTCTGAAGGAATAGAACAGTC < 41bp 1 0.391342105791895 1 0.130419254302979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498113 chr9:6498130 nonsynonymous SNV 0.991 4 38 hm5C_associated_SNPs_30471 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30653 DeepMRMD:1;iRNA_m5C:0.999536712157815 30654 chr8 77620183 77620183 1 + A T OV 77620172 + 77620152 77620192 41 TTGAAGTGTATTGCCATTGGCAACCCTGTTCACCTAAAATG TTGAAGTGTATTGCCATTGGCAACCCTGTTCTCCTAAAATG < 41bp 1 0.0976086434654101 1 0.0693716108798981 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77620172 chr8:77620183 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_30473 0 0 1 0 0 Ribosome 1 0.500231643921401 1 0.999536712157198 hm5C_site_30654 DeepMRMD:1;iRNA_m5C:0.999536712157198 30655 chr16 28845928 28845928 1 + C G OV 28845926 + 28845906 28845946 41 CCCGCCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATCC CCCGCCTCTGGTGGCTGCCACGGCCTATTCTTCCTACATCC < 41bp 1 0.509086596052314 1 0.87845778465271 experiment 0.981826807895372 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845926 chr16:28845928 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_30474 0 0 1 0 1 Cytosol 1 0.500231643937043 0.24308443069458 0.999536712125913 hm5C_site_30655 DeepMRMD:0.24308443069458;iRNA_m5C:0.999536712125913 30656 chr16 67575618 67575618 1 + C G OV 67575598 + 67575578 67575618 41 CCCTCAGCTGCTTCTTCTGTCAACAAGGCCTCCACAGTCAC CCCTCAGCTGCTTCTTCTGTCAACAAGGCCTCCACAGTCAG < 41bp 1 0.652934200193923 1 0.69017106294632 experiment 0.694131599612154 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575598 chr16:67575618 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_30475 0 0 0 0 2 unknown 1 0.500231643761721 0.61965787410736 0.999536712476558 hm5C_site_30656 DeepMRMD:0.61965787410736;iRNA_m5C:0.999536712476558 30657 chr3 14712636 14712636 1 + C G OV 14712656 + 14712636 14712676 41 CAAGCCCCCACAGTTACTTTCAAAACTCTGGATGACATGAT GAAGCCCCCACAGTTACTTTCAAAACTCTGGATGACATGAT < 41bp 1 0.484089947872725 1 0.55262154340744 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14712656 chr3:14712636 nonsynonymous SNV 0.928 1 1 hm5C_associated_SNPs_30476 0 0 1 0 0 Cytosol 1 0.500231643921092 0.89475691318512 0.999536712157815 hm5C_site_30657 DeepMRMD:0.89475691318512;iRNA_m5C:0.999536712157815 30658 chr11 66391988 66391988 1 + G T OV 66391986 + 66391966 66392006 41 CCACCCTTCTTTGGTCGCGACCGCAGCCCTCTGCGCCGTTC CCACCCTTCTTTGGTCGCGACCTCAGCCCTCTGCGCCGTTC < 41bp 1 0.196716318886168 1 0.0549347698688507 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM14 ENSG00000239306 CDS Human protein_coding chr11:66391986 chr11:66391988 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_30477 0 0 1 0 0 Nucleus 1 0.500231638307264 1 0.999536723385472 hm5C_site_30658 DeepMRMD:1;iRNA_m5C:0.999536723385472 30659 chr15 72057451 72057451 1 + A T OV 72057443 + 72057423 72057463 41 ACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTCCTG ACACCTTTGAAGTGTTGGACCCCTCTGATTGTTCTTTCCTG < 41bp 1 0.0263759554223586 1 0.0207565724849701 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control THSD4 ENSG00000187720 CDS Human protein_coding chr15:72057443 chr15:72057451 nonsynonymous SNV 0.784 1 29 hm5C_associated_SNPs_30478 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_30659 DeepMRMD:1;iRNA_m5C:0.999536712157815 30660 chr17 21319331 21319331 1 + C T OV 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGTCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG < 41bp 1 0.653439450797476 1 0.353009074926376 experiment 0.693121098405049 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319331 nonsynonymous SNV 0.995 5 9 hm5C_associated_SNPs_30479 0 0 0 0 0 unknown 1 0.500231643922006 1 0.999536712155989 hm5C_site_30660 DeepMRMD:1;iRNA_m5C:0.999536712155989 30661 chr20 32354838 32354838 1 + G C OV 32354845 + 32354825 32354865 41 TGACCCAGCATAAGAATGAGCAGGTAGGTGGATGGTGGCAG TGACCCAGCATAACAATGAGCAGGTAGGTGGATGGTGGCAG < 41bp 1 0.516227097219822 1 0.484139293432236 experiment 0.967545805560356 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32354845 chr20:32354838 nonsynonymous SNV 0.849 3 14 hm5C_associated_SNPs_30480 0 0 0 0 1 chromatin 1 0.50023131952574 1 0.999537360948521 hm5C_site_30661 DeepMRMD:1;iRNA_m5C:0.999537360948521 30662 chr19 54377047 54377047 1 + C T OV 54377053 + 54377033 54377073 41 ATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTC ATCGTGGAGCTGTGTGGGCTCCAGGCCCGCTTCCCCCTGTC < 41bp 1 0.667272791954517 1 0.882266163825989 experiment 0.665454416090966 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYADM ENSG00000179820 CDS Human protein_coding chr19:54377053 chr19:54377047 synonymous SNV . 0 15 hm5C_associated_SNPs_30481 0 0 1 0 0 Nucleus 1 0.500231643920992 0.235467672348022 0.999536712158017 hm5C_site_30662 DeepMRMD:0.235467672348022;iRNA_m5C:0.999536712158017 30663 chr4 119200397 119200397 1 + G T OV 119200377 + 119200357 119200397 41 TTGGGACCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATG TTGGGACCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATT < 41bp 1 0.057824219398525 1 0.0369261503219604 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200377 chr4:119200397 . . 0 41 hm5C_associated_SNPs_30482 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30663 DeepMRMD:1;iRNA_m5C:0.999536712157815 30664 chr4 119200397 119200397 1 + G T OV 119200381 + 119200361 119200401 41 GACCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAG GACCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAG < 41bp 1 0.262425104676178 1 0.380262136459351 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200381 chr4:119200397 . . 0 37 hm5C_associated_SNPs_30483 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30664 DeepMRMD:1;iRNA_m5C:0.999536712157815 30665 chr4 119200397 119200397 1 + G T OV 119200383 + 119200363 119200403 41 CCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAG CCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAG < 41bp 1 0.119613053439677 1 0.20463690161705 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200383 chr4:119200397 . . 0 35 hm5C_associated_SNPs_30484 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30665 DeepMRMD:1;iRNA_m5C:0.999536712157815 30666 chr4 119200397 119200397 1 + G T OV 119200384 + 119200364 119200404 41 CTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGC CTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAGC < 41bp 1 0.0191221503960095 1 0.112783163785934 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200384 chr4:119200397 . . 0 34 hm5C_associated_SNPs_30485 0 0 1 2 0 unknown 1 0.500231645400086 1 0.999536709199827 hm5C_site_30666 DeepMRMD:1;iRNA_m5C:0.999536709199827 30667 chr4 119200397 119200397 1 + G T OV 119200385 + 119200365 119200405 41 TGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCA TGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAGCA < 41bp 1 0.182563719975757 1 0.404353976249695 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200385 chr4:119200397 . . 0 33 hm5C_associated_SNPs_30486 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30667 DeepMRMD:1;iRNA_m5C:0.999536712157815 30668 chr4 119200397 119200397 1 + G T OV 119200388 + 119200368 119200408 41 CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATAT CAGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAGCATAT < 41bp 1 0.0433657156539464 1 0.393951714038849 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200388 chr4:119200397 . . 0 30 hm5C_associated_SNPs_30487 0 0 1 2 0 unknown 1 0.500231644212574 1 0.999536711574852 hm5C_site_30668 DeepMRMD:1;iRNA_m5C:0.999536711574852 30669 chr4 119200397 119200397 1 + G T OV 119200389 + 119200369 119200409 41 AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATATC AGCCGTGGCAGTCTCCCTTCCTAGCCATTGAAGAGCATATC < 41bp 1 0.228857345923641 1 0.100559741258621 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200389 chr4:119200397 . . 0 29 hm5C_associated_SNPs_30488 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30669 DeepMRMD:1;iRNA_m5C:0.999536712157815 30670 chr9 125154768 125154768 1 + C T OV 125154756 + 125154736 125154776 41 CAAGACCTGTCCCTACGTTTCCTTCCGTGTGCCGGATGCCA CAAGACCTGTCCCTACGTTTCCTTCCGTGTGCTGGATGCCA < 41bp 1 0.0172369531582477 1 0.0425218641757965 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125154756 chr9:125154768 nonsynonymous SNV 0.150 4 33 hm5C_associated_SNPs_30489 0 0 1 0 0 nucleolus 1 0.500231773316411 1 0.999536453367178 hm5C_site_30670 DeepMRMD:1;iRNA_m5C:0.999536453367178 30671 chr19 21301008 21301008 1 + A G OV 21300990 + 21300970 21301010 41 AATTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACA AATTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAGCA < 41bp 1 0.394777041467099 1 0.154471874237061 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300990 chr19:21301008 nonsynonymous SNV 0.002 0 39 hm5C_associated_SNPs_30490 0 0 1 0 0 Cytosol 1 0.500231643597408 1 0.999536712805184 hm5C_site_30671 DeepMRMD:1;iRNA_m5C:0.999536712805184 30672 chr19 21301008 21301008 1 + A G OV 21300992 + 21300972 21301012 41 TTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACT TTCAGCAGGGCATGGTGGCTCATGCCTGTAATCCCAGCACT < 41bp 1 0.292598018266555 1 0.14927265048027 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300992 chr19:21301008 nonsynonymous SNV 0.002 0 37 hm5C_associated_SNPs_30491 0 0 1 0 0 Cytosol 1 0.500231833644868 1 0.999536332710264 hm5C_site_30672 DeepMRMD:1;iRNA_m5C:0.999536332710264 30673 chr19 21301008 21301008 1 + A G OV 21300996 + 21300976 21301016 41 GCAGGGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGA GCAGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGA < 41bp 1 0.180275550482847 1 0.0513757467269897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300996 chr19:21301008 nonsynonymous SNV 0.002 0 33 hm5C_associated_SNPs_30492 0 0 1 0 0 Cytosol 1 0.500231643592938 1 0.999536712814124 hm5C_site_30673 DeepMRMD:1;iRNA_m5C:0.999536712814124 30674 chr19 21301008 21301008 1 + A G OV 21300997 + 21300977 21301017 41 CAGGGCATGGTGGCTCATGCCTGTAATCCCAACACTTTGAG CAGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGAG < 41bp 1 0.606064085345647 1 0.0854746997356415 experiment 0.787871829308706 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21300997 chr19:21301008 nonsynonymous SNV 0.002 0 32 hm5C_associated_SNPs_30493 0 0 1 0 0 Cytosol 1 0.500231120291799 1 0.999537759416402 hm5C_site_30674 DeepMRMD:1;iRNA_m5C:0.999537759416402 30675 chr19 21301008 21301008 1 + A G OV 21301004 + 21300984 21301024 41 TGGTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTA TGGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGACTA < 41bp 1 0.335357089981492 1 0.0986745059490204 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301004 chr19:21301008 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_30494 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30675 DeepMRMD:1;iRNA_m5C:0.999536712157815 30676 chr19 21301008 21301008 1 + A G OV 21301005 + 21300985 21301025 41 GGTGGCTCATGCCTGTAATCCCAACACTTTGAGAGGACTAG GGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGACTAG < 41bp 1 0.166878903241967 1 0.182867079973221 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21301005 chr19:21301008 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_30495 0 0 1 0 0 Cytosol 1 0.500232970885827 1 0.999534058228346 hm5C_site_30676 DeepMRMD:1;iRNA_m5C:0.999534058228346 30677 chr12 108961085 108961085 1 + G T OV 108961066 + 108961046 108961086 41 TAAGTCTCTGCTCTCCATACCAGTCAGCTGGGACATTTGGC TAAGTCTCTGCTCTCCATACCAGTCAGCTGGGACATTTGTC < 41bp 1 0.0687144378425851 1 0.261666536331177 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ISCU ENSG00000136003 CDS Human protein_coding chr12:108961066 chr12:108961085 nonsynonymous SNV 0.004 1 40 hm5C_associated_SNPs_30497 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30677 DeepMRMD:1;iRNA_m5C:0.999536712157815 30678 chr10 43292224 43292224 1 + G T OV 43292225 + 43292205 43292245 41 GACGATGACCTTGAGAGGAGCTCAGCGGAAGAAGGGGAAGC GACGATGACCTTGAGAGGATCTCAGCGGAAGAAGGGGAAGC < 41bp 1 0.452631537077902 1 0.302004545927048 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292225 chr10:43292224 nonsynonymous SNV 0.757 2 20 hm5C_associated_SNPs_30498 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_30678 DeepMRMD:1;iRNA_m5C:0.999536712157816 30679 chr15 69747810 69747810 1 + G C OV 69747803 + 69747783 69747823 41 GGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACA GGAAGCAAAGAAAGAAGAATCCGAGGACTCTGATGATGACA < 41bp 1 0.338203541775551 1 0.529609978199005 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747803 chr15:69747810 nonsynonymous SNV 0.981 1 28 hm5C_associated_SNPs_30500 0 0 1 0 1 Cytosol 1 0.500231644953045 0.94078004360199 0.99953671009391 hm5C_site_30679 DeepMRMD:0.94078004360199;iRNA_m5C:0.99953671009391 30680 chr15 69747810 69747810 1 + G C OV 69747822 + 69747802 69747842 41 TCCGAGGAGTCTGATGATGACATGGGCTTTGGTCTTTTTGA TCCGAGGACTCTGATGATGACATGGGCTTTGGTCTTTTTGA < 41bp 1 0.386604609537226 1 0.502996385097504 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747822 chr15:69747810 nonsynonymous SNV 0.981 1 9 hm5C_associated_SNPs_30501 0 0 1 0 1 Cytosol 1 0.500231643873992 0.994007229804992 0.999536712252017 hm5C_site_30680 DeepMRMD:0.994007229804992;iRNA_m5C:0.999536712252017 30681 chr9 131847014 131847014 1 + G C OV 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTCACCCT < 41bp 1 0.536841728259266 1 0.206163048744202 experiment 0.926316543481469 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847014 synonymous SNV . 0 36 hm5C_associated_SNPs_30502 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_30681 DeepMRMD:1;iRNA_m5C:0.999536712157813 30682 chr7 75932058 75932058 1 + T A OV 75932069 + 75932049 75932089 41 CCTTCTCGCTCCTGCGGGGCCCCAGCTGGGACCCCTTCCGC CCTTCTCGCACCTGCGGGGCCCCAGCTGGGACCCCTTCCGC < 41bp 1 0.547595909852528 1 0.335690677165985 experiment 0.904808180294944 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75932069 chr7:75932058 nonsynonymous SNV 0.999 3 10 hm5C_associated_SNPs_30503 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30682 DeepMRMD:1;iRNA_m5C:0.999536712157815 30683 chr7 75932058 75932058 1 + T A OV 75932070 + 75932050 75932090 41 CTTCTCGCTCCTGCGGGGCCCCAGCTGGGACCCCTTCCGCG CTTCTCGCACCTGCGGGGCCCCAGCTGGGACCCCTTCCGCG < 41bp 1 0.416013690314037 1 0.462096571922302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75932070 chr7:75932058 nonsynonymous SNV 0.999 3 9 hm5C_associated_SNPs_30504 0 0 1 0 0 Cytosol 1 0.500231643921197 1 0.999536712157606 hm5C_site_30683 DeepMRMD:1;iRNA_m5C:0.999536712157606 30684 chr9 132482984 132482984 1 + A C OV 132482973 + 132482953 132482993 41 AAGTCCTACAGCCAGGAGGCCGCCATCGAGCAGCCCGTGGC AAGTCCTACAGCCAGGAGGCCGCCATCGAGCCGCCCGTGGC < 41bp 1 0.650797903812321 1 0.582274913787842 experiment 0.698404192375357 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132482973 chr9:132482984 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_30505 0 0 0 0 1 chromatin 1 0.500231643963972 0.835450172424316 0.999536712072056 hm5C_site_30684 DeepMRMD:0.835450172424316;iRNA_m5C:0.999536712072056 30685 chr12 109961915 109961915 1 + A T OV 109961906 + 109961886 109961926 41 ACTCCGAGTTCTATAAAAACCTCACCTCCATCAAGGTGAGC ACTCCGAGTTCTATAAAAACCTCACCTCCTTCAAGGTGAGC < 41bp 1 0.197398291738506 1 0.0463142096996307 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3B ENSG00000151148 CDS Human protein_coding chr12:109961906 chr12:109961915 nonsynonymous SNV 0.936 4 30 hm5C_associated_SNPs_30506 0 0 1 0 1 Cytosol 1 0.500231643912645 1 0.99953671217471 hm5C_site_30685 DeepMRMD:1;iRNA_m5C:0.99953671217471 30686 chr12 109961915 109961915 1 + A T OV 109961913 + 109961893 109961933 41 GTTCTATAAAAACCTCACCTCCATCAAGGTGAGCATGGAAT GTTCTATAAAAACCTCACCTCCTTCAAGGTGAGCATGGAAT < 41bp 1 0.012326241552139 1 0.103069245815277 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3B ENSG00000151148 CDS Human protein_coding chr12:109961913 chr12:109961915 nonsynonymous SNV 0.936 4 23 hm5C_associated_SNPs_30507 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30686 DeepMRMD:1;iRNA_m5C:0.999536712157815 30687 chr17 46136559 46136559 1 + C T OV 46136553 + 46136533 46136573 41 CGAGCCCGAGCCATGAAGATCCCTTTCACCAATGACAAAAT CGAGCCCGAGCCATGAAGATCCCTTTTACCAATGACAAAAT < 41bp 1 0.0529057874650665 1 0.0509778261184692 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46136553 chr17:46136559 synonymous SNV . 0 27 hm5C_associated_SNPs_30509 0 0 1 0 0 Ribosome 1 0.500231641183384 1 0.999536717633232 hm5C_site_30687 DeepMRMD:1;iRNA_m5C:0.999536717633232 30688 chr5 32089619 32089619 1 + G A OV 32089601 + 32089581 32089621 41 CGACAGAGGTTGCCCAACCACCCCTAAATCTCCTAAGTGTA CGACAGAGGTTGCCCAACCACCCCTAAATCTCCTAAGTATA < 41bp 1 0.0538505634302812 1 0.0993531346321106 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32089601 chr5:32089619 nonsynonymous SNV 0.003 0 39 hm5C_associated_SNPs_30511 0 0 0 0 0 chromatin 1 0.500231596105413 1 0.999536807789174 hm5C_site_30688 DeepMRMD:1;iRNA_m5C:0.999536807789174 30689 chr19 54711374 54711374 1 + C T OV 54711362 + 54711342 54711382 41 CGCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAG CGCTCTCCCTACGGGGGTGGCCGCCCGGGCCGTGTGAAGAG < 41bp 1 0.358800510275462 1 0.304022490978241 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711362 chr19:54711374 synonymous SNV . 0 33 hm5C_associated_SNPs_30513 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_30689 DeepMRMD:1;iRNA_m5C:0.999536712157815 30690 chr19 54711374 54711374 1 + C T OV 54711363 + 54711343 54711383 41 GCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAGG GCTCTCCCTACGGGGGTGGCCGCCCGGGCCGTGTGAAGAGG < 41bp 1 0.615417852305446 1 0.427039951086044 experiment 0.769164295389109 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711363 chr19:54711374 synonymous SNV . 0 32 hm5C_associated_SNPs_30514 0 0 1 0 0 Ribosome 1 0.500231643920209 1 0.999536712159582 hm5C_site_30690 DeepMRMD:1;iRNA_m5C:0.999536712159582 30691 chr8 48883166 48883166 1 + C T OV 48883170 + 48883150 48883190 41 ACATCTTGCTGTGTGGCGACCCTGGTACCAGCAAGTCCCAG ACATCTTGCTGTGTGGTGACCCTGGTACCAGCAAGTCCCAG < 41bp 1 0.339892018915055 1 0.230674833059311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48883170 chr8:48883166 synonymous SNV . 0 17 hm5C_associated_SNPs_30515 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30691 DeepMRMD:1;iRNA_m5C:0.999536712157815 30692 chr10 103912171 103912171 1 + G A OV 103912153 + 103912133 103912173 41 CGTCGACAACGGTAGTGACGCGTATTGCCTGGAGGATGGCG CGTCGACAACGGTAGTGACGCGTATTGCCTGGAGGATGACG < 41bp 1 0.384981311145527 1 0.0305895209312439 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103912153 chr10:103912171 nonsynonymous SNV 0.991 4 39 hm5C_associated_SNPs_30516 0 0 1 0 0 Nucleus 1 0.50023164384723 1 0.999536712305541 hm5C_site_30692 DeepMRMD:1;iRNA_m5C:0.999536712305541 30693 chr16 8735028 8735028 1 + C T OV 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGATGACCTCTGCACAGGTGTGTGTTTC < 41bp 1 0.254262150330143 1 0.510338008403778 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735028 synonymous SNV . 0 17 hm5C_associated_SNPs_30517 0 0 1 0 2 Cytosol 1 0.500227420096332 0.979323983192444 0.999545159807337 hm5C_site_30693 DeepMRMD:0.979323983192444;iRNA_m5C:0.999545159807337 30694 chr7 101960936 101960936 1 + C T OV 101960919 + 101960899 101960939 41 CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTCGCA CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTTGCA < 41bp 1 0.451138306022947 1 0.619796872138977 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101960919 chr7:101960936 nonsynonymous SNV 0.428 4 38 hm5C_associated_SNPs_30518 0 0 0 0 1 nucleoplasm 1 0.500231643921092 0.760406255722046 0.999536712157815 hm5C_site_30694 DeepMRMD:0.760406255722046;iRNA_m5C:0.999536712157815 30695 chr5 65118659 65118659 1 + C T OV 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGGGGATCTCTGGATGGCATGGACATGC < 41bp 1 0.377656861313105 1 0.227969527244568 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118659 synonymous SNV . 0 28 hm5C_associated_SNPs_30519 0 0 1 0 1 Ribosome 1 0.500231643546673 1 0.999536712906654 hm5C_site_30695 DeepMRMD:1;iRNA_m5C:0.999536712906654 30696 chr20 39977793 39977793 1 + G A OV 39977802 + 39977782 39977822 41 ACTCGGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC ACTCGGATGGCAAGTGGCCCCCCCAGGCCAGGTAAGAGTCC < 41bp 1 0.515970835326217 1 0.358942210674286 experiment 0.968058329347566 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977802 chr20:39977793 nonsynonymous SNV 0.946 4 12 hm5C_associated_SNPs_30520 0 0 1 0 3 Nucleus 1 0.500231643921113 1 0.999536712157774 hm5C_site_30696 DeepMRMD:1;iRNA_m5C:0.999536712157774 30697 chr16 68718540 68718540 1 + G A OV 68718546 + 68718526 68718566 41 TTGAAGTGACCAACGAGGCCCCTTTTGTGCTGAAGCTCCCA TTGAAGTGACCAACAAGGCCCCTTTTGTGCTGAAGCTCCCA < 41bp 1 0.0097968258972077 1 0.0506214499473572 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDH3 ENSG00000062038 CDS Human protein_coding chr16:68718546 chr16:68718540 nonsynonymous SNV 0.342 0 15 hm5C_associated_SNPs_30521 0 0 0 0 0 Endoplasmic reticulum 1 0.50023164364537 1 0.99953671270926 hm5C_site_30697 DeepMRMD:1;iRNA_m5C:0.99953671270926 30698 chrX 106046121 106046121 1 + C T OV 106046129 + 106046109 106046149 41 TTCTGAAAAATGCGCTGAAGCTGTGGCTGATGGAAAGGTCC TTCTGAAAAATGTGCTGAAGCTGTGGCTGATGGAAAGGTCC < 41bp 1 0.54849851549321 1 0.153141409158707 experiment 0.90300296901358 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106046129 chrX:106046121 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_30522 0 0 1 0 1 exosome 1 0.500231643921313 1 0.999536712157375 hm5C_site_30698 DeepMRMD:1;iRNA_m5C:0.999536712157375 30699 chr2 169551529 169551529 1 + A T OV 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGTTGTTTTCTCAGTTCACTGATATCAAAA < 41bp 1 0.518472549290156 1 0.640818953514099 experiment 0.963054901419688 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551529 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_30523 0 0 1 0 2 Endoplasmic reticulum 1 0.500231636555701 0.718362092971802 0.999536726888598 hm5C_site_30699 DeepMRMD:0.718362092971802;iRNA_m5C:0.999536726888598 30700 chr9 131010999 131010999 1 + G A OV 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGGGACCTCATACCCAAGACCATCATG < 41bp 1 0.338254949516467 1 0.0706710815429688 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131010999 nonsynonymous SNV 0.999 1 26 hm5C_associated_SNPs_30524 0 0 1 2 1 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157812 hm5C_site_30700 DeepMRMD:1;iRNA_m5C:0.999536712157812 30701 chr7 819707 819707 1 + G T OV 819711 + 819691 819731 41 TCCTACTATCAGAGCAGTGTCCAGTACCTGTACCGAGAGTT TCCTACTATCAGAGCATTGTCCAGTACCTGTACCGAGAGTT < 41bp 1 0.198587956991148 1 0.331994831562042 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:819711 chr7:819707 nonsynonymous SNV 0.139 1 17 hm5C_associated_SNPs_30525 0 0 1 0 1 Ribosome 1 0.500231745224918 1 0.999536509550164 hm5C_site_30701 DeepMRMD:1;iRNA_m5C:0.999536509550164 30702 chr10 60549137 60549137 1 + T A OV 60549151 + 60549131 60549171 41 TTTCAGTATCATTTAAACAGCGTTCCCGAATGTATGGTGCT TTTCAGAATCATTTAAACAGCGTTCCCGAATGTATGGTGCT < 41bp 1 0.0161586778205483 1 0.0459296107292175 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60549151 chr10:60549137 nonsynonymous SNV 0.995 4 7 hm5C_associated_SNPs_30526 0 0 1 0 1 nucleus 1 0.500231643925577 1 0.999536712148846 hm5C_site_30702 DeepMRMD:1;iRNA_m5C:0.999536712148846 30703 chr2 169551528 169551528 1 + G C OV 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTCATGTTTTCTCAGTTCACTGATATCAAAA < 41bp 1 0.455327899469119 1 0.252409338951111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551528 nonsynonymous SNV 0.999 5 13 hm5C_associated_SNPs_30527 0 0 1 0 2 Endoplasmic reticulum 1 0.500230427737592 1 0.999539144524815 hm5C_site_30703 DeepMRMD:1;iRNA_m5C:0.999539144524815 30704 chr10 75520017 75520017 1 + G C OV 75520010 + 75519990 75520030 41 TGGACAGAGTTTTGGAGGGCCCTCAGTGAGCCAGCCCAACC TGGACAGAGTTTTGGAGGGCCCTCAGTCAGCCAGCCCAACC < 41bp 1 0.264717861795607 1 0.02411288022995 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520010 chr10:75520017 synonymous SNV . 0 28 hm5C_associated_SNPs_30528 0 0 1 1 0 Nucleus 1 0.500231621483445 1 0.99953675703311 hm5C_site_30704 DeepMRMD:1;iRNA_m5C:0.99953675703311 30705 chr7 43990227 43990227 1 + G A OV 43990229 + 43990209 43990249 41 ATCTGCTCGCTGCTCTGCGACCCCAACCCCGATGACCCCCT ATCTGCTCGCTGCTCTGCAACCCCAACCCCGATGACCCCCT < 41bp 1 0.61078911311789 1 0.0782686173915863 experiment 0.778421773764219 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2D4 ENSG00000078967 CDS Human protein_coding chr7:43990229 chr7:43990227 nonsynonymous SNV 0.965 2 19 hm5C_associated_SNPs_30529 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30705 DeepMRMD:1;iRNA_m5C:0.999536712157815 30706 chr19 10789834 10789834 1 + C G OV 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG GTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0967819338719398 1 0.0768981873989105 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789834 nonsynonymous SNV 0.936 1 1 hm5C_associated_SNPs_30530 0 0 1 0 2 Cytosol 1 0.500231643921086 1 0.999536712157829 hm5C_site_30706 DeepMRMD:1;iRNA_m5C:0.999536712157829 30707 chr13 26956987 26956987 1 + G C OV 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TTTTAGTTATGGGTGAAGGTCCTCAGCGAGGAAGAGTAAAA < 41bp 1 0.140938686257048 1 0.0430678129196167 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956987 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_30531 0 0 1 0 2 Cytosol 1 0.500231644635008 1 0.999536710729983 hm5C_site_30707 DeepMRMD:1;iRNA_m5C:0.999536710729983 30708 chr1 162469786 162469786 1 + G A OV 162469797 + 162469777 162469817 41 TCTCCAAATGTGCCATCACGCTGTCTGTTGCTTGAACTCCT TCTCCAAATATGCCATCACGCTGTCTGTTGCTTGAACTCCT < 41bp 1 0.273164448004523 1 0.298794567584991 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162469797 chr1:162469786 nonsynonymous SNV 0.997 0 10 hm5C_associated_SNPs_30532 0 0 1 0 1 chromatin 1 0.500231643917009 1 0.999536712165982 hm5C_site_30708 DeepMRMD:1;iRNA_m5C:0.999536712165982 30709 chr6 43143543 43143543 1 + G C OV 43143562 + 43143542 43143582 41 CGGCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGT CCGCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGT < 41bp 1 0.0432828714241911 1 0.10919725894928 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SRF ENSG00000112658 CDS Human protein_coding chr6:43143562 chr6:43143543 nonsynonymous SNV 0.992 4 2 hm5C_associated_SNPs_30533 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30709 DeepMRMD:1;iRNA_m5C:0.999536712157815 30710 chr6 43143543 43143543 1 + G C OV 43143563 + 43143543 43143583 41 GGCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGTC CGCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGTC < 41bp 1 0.123937736060202 1 0.046401172876358 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRF ENSG00000112658 CDS Human protein_coding chr6:43143563 chr6:43143543 nonsynonymous SNV 0.992 4 1 hm5C_associated_SNPs_30534 0 0 1 0 1 Ribosome 1 0.500231643921088 1 0.999536712157824 hm5C_site_30710 DeepMRMD:1;iRNA_m5C:0.999536712157824 30711 chr6 43143544 43143544 1 + G T OV 43143562 + 43143542 43143582 41 CGGCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGT CGTCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGT < 41bp 1 0.046649026942986 1 0.136949390172958 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SRF ENSG00000112658 CDS Human protein_coding chr6:43143562 chr6:43143544 nonsynonymous SNV 0.995 4 3 hm5C_associated_SNPs_30535 0 0 1 0 0 Ribosome 1 0.500231643921043 1 0.999536712157914 hm5C_site_30711 DeepMRMD:1;iRNA_m5C:0.999536712157914 30712 chr6 43143544 43143544 1 + G T OV 43143563 + 43143543 43143583 41 GGCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGTC GTCCCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGTC < 41bp 1 0.148592108091549 1 0.039557158946991 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRF ENSG00000112658 CDS Human protein_coding chr6:43143563 chr6:43143544 nonsynonymous SNV 0.995 4 2 hm5C_associated_SNPs_30536 0 0 1 0 0 Ribosome 1 0.500231643921089 1 0.999536712157823 hm5C_site_30712 DeepMRMD:1;iRNA_m5C:0.999536712157823 30713 chrX 110954936 110954936 1 + C T OV 110954916 + 110954896 110954936 41 TTTGAAGTATGTGGAGGGATCTTTTGAGAAATACCTGGAAC TTTGAAGTATGTGGAGGGATCTTTTGAGAAATACCTGGAAT < 41bp 1 0.14598716180263 1 0.0641109347343445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110954916 chrX:110954936 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_30538 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30713 DeepMRMD:1;iRNA_m5C:0.999536712157815 30714 chr1 43911903 43911903 1 + C A OV 43911906 + 43911886 43911926 41 CGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATT CGGGCACTGCCTGGGGGAATCATCCTCATGGAACTGGCATT < 41bp 1 0.0729336384147762 1 0.294087380170822 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911906 chr1:43911903 synonymous SNV . 0 18 hm5C_associated_SNPs_30540 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30714 DeepMRMD:1;iRNA_m5C:0.999536712157815 30715 chr1 43911903 43911903 1 + C A OV 43911909 + 43911889 43911929 41 GCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCA GCACTGCCTGGGGGAATCATCCTCATGGAACTGGCATTCCA < 41bp 1 0.203630346954316 1 0.117857933044434 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911909 chr1:43911903 synonymous SNV . 0 15 hm5C_associated_SNPs_30541 0 0 0 0 2 Cytosol 1 0.500231676476651 1 0.999536647046698 hm5C_site_30715 DeepMRMD:1;iRNA_m5C:0.999536647046698 30716 chr1 43911903 43911903 1 + C A OV 43911910 + 43911890 43911930 41 CACTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCAG CACTGCCTGGGGGAATCATCCTCATGGAACTGGCATTCCAG < 41bp 1 0.22490782689616 1 0.13577464222908 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911910 chr1:43911903 synonymous SNV . 0 14 hm5C_associated_SNPs_30542 0 0 0 0 2 Cytosol 1 0.500231643921113 1 0.999536712157775 hm5C_site_30716 DeepMRMD:1;iRNA_m5C:0.999536712157775 30717 chr1 43911903 43911903 1 + C A OV 43911912 + 43911892 43911932 41 CTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCAGGT CTGCCTGGGGGAATCATCCTCATGGAACTGGCATTCCAGGT < 41bp 1 0.255165423840177 1 0.685147166252136 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911912 chr1:43911903 synonymous SNV . 0 12 hm5C_associated_SNPs_30543 0 0 0 0 2 Cytosol 1 0.500231643921087 0.629705667495728 0.999536712157826 hm5C_site_30717 DeepMRMD:0.629705667495728;iRNA_m5C:0.999536712157826 30718 chr6 7226808 7226808 1 + G C OV 7226819 + 7226799 7226839 41 TTTCATACAGAACAACCCTTCAATTCCTGCTGGCTTCCACG TTTCATACACAACAACCCTTCAATTCCTGCTGGCTTCCACG < 41bp 1 0.0288400157080821 1 0.125886708498001 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RREB1 ENSG00000124782 CDS Human protein_coding chr6:7226819 chr6:7226808 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_30544 0 0 1 0 1 Nucleus 1 0.500231643922632 1 0.999536712154735 hm5C_site_30718 DeepMRMD:1;iRNA_m5C:0.999536712154735 30719 chr1 22307642 22307642 1 + G A OV 22307622 + 22307602 22307642 41 TCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGG TCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGA < 41bp 1 0.111001096230068 1 0.0684033334255219 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307622 chr1:22307642 stopgain 0.092 0 41 hm5C_associated_SNPs_30545 0 0 0 0 1 unknown 1 0.500231643921066 1 0.999536712157869 hm5C_site_30719 DeepMRMD:1;iRNA_m5C:0.999536712157869 30720 chr1 22307642 22307642 1 + G A OV 22307624 + 22307604 22307644 41 CCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGGAA CCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGAAA < 41bp 1 0.169432104641958 1 0.0733899176120758 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307624 chr1:22307642 stopgain 0.092 0 39 hm5C_associated_SNPs_30546 0 0 0 0 1 unknown 1 0.500231643921118 1 0.999536712157763 hm5C_site_30720 DeepMRMD:1;iRNA_m5C:0.999536712157763 30721 chr1 22307642 22307642 1 + G A OV 22307631 + 22307611 22307651 41 ACTCTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGGGGACCTCTTTGTGCATCCACTCTGAAACCGCTCG < 41bp 1 0.100461425360964 1 0.30762043595314 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307631 chr1:22307642 stopgain 0.092 0 32 hm5C_associated_SNPs_30547 0 0 0 0 1 unknown 1 0.500231643922103 1 0.999536712155794 hm5C_site_30721 DeepMRMD:1;iRNA_m5C:0.999536712155794 30722 chr1 22307642 22307642 1 + G A OV 22307634 + 22307614 22307654 41 CTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGGGGACCTCTTTGTGCATCCACTCTGAAACCGCTCGTGT < 41bp 1 0.116173281586996 1 0.0448500216007233 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307634 chr1:22307642 stopgain 0.092 0 29 hm5C_associated_SNPs_30548 0 0 0 0 1 unknown 1 0.50023164392109 1 0.99953671215782 hm5C_site_30722 DeepMRMD:1;iRNA_m5C:0.99953671215782 30723 chr1 22307642 22307642 1 + G A OV 22307635 + 22307615 22307655 41 TGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGGGGACCTCTTTGTGCATCCACTCTGAAACCGCTCGTGTG < 41bp 1 0.126430951818314 1 0.0653737187385559 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307635 chr1:22307642 stopgain 0.092 0 28 hm5C_associated_SNPs_30549 0 0 0 0 1 unknown 1 0.500231644231419 1 0.999536711537163 hm5C_site_30723 DeepMRMD:1;iRNA_m5C:0.999536711537163 30724 chr1 22307642 22307642 1 + G A OV 22307637 + 22307617 22307657 41 GGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG GGGACCTCTTTGTGCATCCACTCTGAAACCGCTCGTGTGTG < 41bp 1 0.227646663010391 1 0.0479481220245361 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307637 chr1:22307642 stopgain 0.092 0 26 hm5C_associated_SNPs_30550 0 0 0 0 1 unknown 1 0.5002316439441 1 0.9995367121118 hm5C_site_30724 DeepMRMD:1;iRNA_m5C:0.9995367121118 30725 chr1 22307642 22307642 1 + G A OV 22307639 + 22307619 22307659 41 GACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGC GACCTCTTTGTGCATCCACTCTGAAACCGCTCGTGTGTGGC < 41bp 1 0.408932583182475 1 0.593547403812408 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307639 chr1:22307642 stopgain 0.092 0 24 hm5C_associated_SNPs_30551 0 0 0 0 1 unknown 1 0.500231646620225 0.812905192375184 0.999536706759549 hm5C_site_30725 DeepMRMD:0.812905192375184;iRNA_m5C:0.999536706759549 30726 chr1 22307642 22307642 1 + G A OV 22307645 + 22307625 22307665 41 TTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGG TTTGTGCATCCACTCTGAAACCGCTCGTGTGTGGCCTGTGG < 41bp 1 0.15494913627898 1 0.0384257137775421 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307645 chr1:22307642 stopgain 0.092 0 18 hm5C_associated_SNPs_30552 0 0 0 0 1 unknown 1 0.50023128345659 1 0.999537433086821 hm5C_site_30726 DeepMRMD:1;iRNA_m5C:0.999537433086821 30727 chr1 22307642 22307642 1 + G A OV 22307646 + 22307626 22307666 41 TTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGG TTGTGCATCCACTCTGAAACCGCTCGTGTGTGGCCTGTGGG < 41bp 1 0.221731024391932 1 0.230593621730804 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307646 chr1:22307642 stopgain 0.092 0 17 hm5C_associated_SNPs_30553 0 0 0 0 1 unknown 1 0.500235598563714 1 0.999528802872572 hm5C_site_30727 DeepMRMD:1;iRNA_m5C:0.999528802872572 30728 chr1 22307642 22307642 1 + G A OV 22307648 + 22307628 22307668 41 GTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGGTG GTGCATCCACTCTGAAACCGCTCGTGTGTGGCCTGTGGGTG < 41bp 1 0.470271919527947 1 0.164645075798035 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307648 chr1:22307642 stopgain 0.092 0 15 hm5C_associated_SNPs_30554 0 0 0 0 1 unknown 1 0.500232783878345 1 0.999534432243309 hm5C_site_30728 DeepMRMD:1;iRNA_m5C:0.999534432243309 30729 chr7 101845130 101845130 1 + G A OV 101845118 + 101845098 101845138 41 GCCAAGGCCGAAGAAACGGGCGGCGGGAAAGAGAAGGGCAG GCCAAGGCCGAAGAAACGGGCGGCGGGAAAGAAAAGGGCAG < 41bp 1 0.350070209005112 1 0.600782811641693 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101845118 chr7:101845130 synonymous SNV . 0 33 hm5C_associated_SNPs_30555 0 0 1 0 0 Exosome 1 0.500231643921092 0.798434376716614 0.999536712157815 hm5C_site_30729 DeepMRMD:0.798434376716614;iRNA_m5C:0.999536712157815 30730 chr5 40853317 40853317 1 + C T OV 40853307 + 40853287 40853327 41 GAAGGAAGAACATGGAGGGCCTTCAAGCTGCCCTCCAGGAA GAAGGAAGAACATGGAGGGCCTTCAAGCTGTCCTCCAGGAA < 41bp 1 0.502146502361593 1 0.12585511803627 experiment 0.995706995276814 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CARD6 ENSG00000132357 CDS Human protein_coding chr5:40853307 chr5:40853317 nonsynonymous SNV 0.319 4 31 hm5C_associated_SNPs_30556 0 0 0 0 0 exosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_30730 DeepMRMD:1;iRNA_m5C:0.999536712157812 30731 chr12 100732643 100732643 1 + A G OV 100732627 + 100732607 100732647 41 ACTTCAATGCTTTGAGTGTTCCTCCTGCTGGTGCAAAGCAG ACTTCAATGCTTTGAGTGTTCCTCCTGCTGGTGCAAGGCAG < 41bp 1 0.232511850607778 1 0.0538118481636047 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732627 chr12:100732643 nonsynonymous SNV 0.782 0 37 hm5C_associated_SNPs_30557 0 0 1 0 0 chromatin 1 0.500231638187542 1 0.999536723624916 hm5C_site_30731 DeepMRMD:1;iRNA_m5C:0.999536723624916 30732 chr12 100732643 100732643 1 + A G OV 100732630 + 100732610 100732650 41 TCAATGCTTTGAGTGTTCCTCCTGCTGGTGCAAAGCAGACC TCAATGCTTTGAGTGTTCCTCCTGCTGGTGCAAGGCAGACC < 41bp 1 0.187775712381889 1 0.210396319627762 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732630 chr12:100732643 nonsynonymous SNV 0.782 0 34 hm5C_associated_SNPs_30558 0 0 1 0 0 chromatin 1 0.500231643920999 1 0.999536712158003 hm5C_site_30732 DeepMRMD:1;iRNA_m5C:0.999536712158003 30733 chr12 100732643 100732643 1 + A G OV 100732631 + 100732611 100732651 41 CAATGCTTTGAGTGTTCCTCCTGCTGGTGCAAAGCAGACCC CAATGCTTTGAGTGTTCCTCCTGCTGGTGCAAGGCAGACCC < 41bp 1 0.662504437155391 1 0.49610224366188 experiment 0.674991125689218 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732631 chr12:100732643 nonsynonymous SNV 0.782 0 33 hm5C_associated_SNPs_30559 0 0 1 0 0 chromatin 1 0.500231643921269 1 0.999536712157462 hm5C_site_30733 DeepMRMD:1;iRNA_m5C:0.999536712157462 30734 chr12 100732643 100732643 1 + A G OV 100732634 + 100732614 100732654 41 TGCTTTGAGTGTTCCTCCTGCTGGTGCAAAGCAGACCCAAC TGCTTTGAGTGTTCCTCCTGCTGGTGCAAGGCAGACCCAAC < 41bp 1 0.637764803177203 1 0.790884733200073 experiment 0.724470393645593 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732634 chr12:100732643 nonsynonymous SNV 0.782 0 30 hm5C_associated_SNPs_30560 0 0 1 0 0 chromatin 1 0.500231663411945 0.418230533599854 0.99953667317611 hm5C_site_30734 DeepMRMD:0.418230533599854;iRNA_m5C:0.99953667317611 30735 chr12 100732643 100732643 1 + A G OV 100732661 + 100732641 100732681 41 AAAGCAGACCCAACAAAGACCCACAGATATGTCTGCCCTTA AAGGCAGACCCAACAAAGACCCACAGATATGTCTGCCCTTA < 41bp 1 0.516333036177282 1 0.0633128583431244 experiment 0.967333927645436 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732661 chr12:100732643 nonsynonymous SNV 0.782 0 3 hm5C_associated_SNPs_30561 0 0 1 0 0 chromatin 1 0.500231643923298 1 0.999536712153404 hm5C_site_30735 DeepMRMD:1;iRNA_m5C:0.999536712153404 30736 chr12 100732643 100732643 1 + A G OV 100732662 + 100732642 100732682 41 AAGCAGACCCAACAAAGACCCACAGATATGTCTGCCCTTAA AGGCAGACCCAACAAAGACCCACAGATATGTCTGCCCTTAA < 41bp 1 0.641676562621389 1 0.096072256565094 experiment 0.716646874757223 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732662 chr12:100732643 nonsynonymous SNV 0.782 0 2 hm5C_associated_SNPs_30562 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30736 DeepMRMD:1;iRNA_m5C:0.999536712157815 30737 chr16 22328494 22328494 1 + C G OV 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCACGCTGCCCGTGGCCGATCAGATCAAGATCCTGAT < 41bp 1 0.20636079904909 1 0.183167785406113 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328494 nonsynonymous SNV 0.942 4 16 hm5C_associated_SNPs_30563 0 0 1 0 2 Ribosome 1 0.500231632088711 1 0.999536735822578 hm5C_site_30737 DeepMRMD:1;iRNA_m5C:0.999536735822578 30738 chr15 96875659 96875659 1 + A T OV 96875664 + 96875644 96875684 41 AAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGC AAGCGCAGCGTGCGGTGGAACCTGAGCTACACGTGCCGCGC < 41bp 1 0.564814870492301 1 0.585647165775299 experiment 0.870370259015399 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F2 ENSG00000185551 CDS Human protein_coding chr15:96875664 chr15:96875659 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_30564 0 0 1 0 0 Cytoplasm 1 0.500231643921559 0.828705668449402 0.999536712156883 hm5C_site_30738 DeepMRMD:0.828705668449402;iRNA_m5C:0.999536712156883 30739 chr19 30936318 30936318 1 + G T OV 30936308 + 30936288 30936328 41 TTTTTGTCACACGGGCTGAACCAGACTCTCGAGTATAACCT TTTTTGTCACACGGGCTGAACCAGACTCTCTAGTATAACCT < 41bp 1 0.297989485098836 1 0.110998690128326 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936308 chr19:30936318 stopgain 0.530 0 31 hm5C_associated_SNPs_30565 0 0 1 0 0 exosome 1 0.500231647024958 1 0.999536705950084 hm5C_site_30739 DeepMRMD:1;iRNA_m5C:0.999536705950084 30740 chr8 145735156 145735156 1 + C T OV 145735174 + 145735154 145735194 41 GGCCGCGCTAGCTGGGGGCGCGCTGCTGGCGCTGCTGCCCA GGTCGCGCTAGCTGGGGGCGCGCTGCTGGCGCTGCTGCCCA < 41bp 1 0.573838887963658 1 0.350781559944153 experiment 0.852322224072683 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735174 chr8:145735156 nonsynonymous SNV 0.020 1 3 hm5C_associated_SNPs_30566 0 0 1 0 0 Ribosome 1 0.500231643920682 1 0.999536712158635 hm5C_site_30740 DeepMRMD:1;iRNA_m5C:0.999536712158635 30741 chr1 171560762 171560762 1 + C T OV 171560780 + 171560760 171560800 41 AACGGTTCTTCTCTGAACAGCAACAGAGCAAACAGATAGGA AATGGTTCTTCTCTGAACAGCAACAGAGCAAACAGATAGGA < 41bp 1 0.350925090618584 1 0.389968723058701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171560780 chr1:171560762 nonsynonymous SNV 0.999 3 3 hm5C_associated_SNPs_30567 0 0 1 0 1 Cytosol 1 0.500231643739625 1 0.99953671252075 hm5C_site_30741 DeepMRMD:1;iRNA_m5C:0.99953671252075 30742 chr11 9462020 9462020 1 + A G OV 9462007 + 9461987 9462027 41 ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATGAT ATTATGACTTGGCAGAGGAACTGGGGAGTGATGGAGATGAT < 41bp 1 0.651410162367347 1 0.476011544466019 experiment 0.697179675265307 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462007 chr11:9462020 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_30568 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_30742 DeepMRMD:1;iRNA_m5C:0.999536712157815 30743 chr17 74557209 74557209 1 + C T OV 74557218 + 74557198 74557238 41 CATGATGATTTCAAGTTATCCCTGTCTGAAGGCAAAGAAAG CATGATGATTTTAAGTTATCCCTGTCTGAAGGCAAAGAAAG < 41bp 1 0.0744758385434105 1 0.0400821566581726 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557218 chr17:74557209 . . 0 12 hm5C_associated_SNPs_30570 0 0 1 1 0 unknown 1 0.500231643921866 1 0.999536712156268 hm5C_site_30743 DeepMRMD:1;iRNA_m5C:0.999536712156268 30744 chr17 74557209 74557209 1 + C T OV 74557219 + 74557199 74557239 41 ATGATGATTTCAAGTTATCCCTGTCTGAAGGCAAAGAAAGG ATGATGATTTTAAGTTATCCCTGTCTGAAGGCAAAGAAAGG < 41bp 1 0.0987614622201185 1 0.0693772435188293 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD1B ENSG00000199961 ncRNA_exonic Human snoRNA chr17:74557219 chr17:74557209 . . 0 11 hm5C_associated_SNPs_30571 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_30744 DeepMRMD:1;iRNA_m5C:0.999536712157815 30745 chr2 32958940 32958940 1 + C T OV 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTGTATTGGAATGCCTGAAGATTTTCTATTGCTGT < 41bp 1 0.658835113471206 1 0.618620872497559 experiment 0.682329773057588 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958940 nonsynonymous SNV 0.995 4 18 hm5C_associated_SNPs_30572 0 0 1 0 2 Nucleus 1 0.500231520406832 0.762758255004882 0.999536959186336 hm5C_site_30745 DeepMRMD:0.762758255004882;iRNA_m5C:0.999536959186336 30746 chr17 48824043 48824043 1 + A G OV 48824053 + 48824033 48824073 41 AGAGAACAAGATAGAAAATCCAAGGAGAAAGGTTAGTTTAT AGAGAACAAGGTAGAAAATCCAAGGAGAAAGGTTAGTTTAT < 41bp 1 0.665317361863001 1 0.581821322441101 experiment 0.669365276273997 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48824053 chr17:48824043 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_30573 0 0 1 0 1 Nucleus 1 0.50023164451183 0.836357355117798 0.999536710976339 hm5C_site_30746 DeepMRMD:0.836357355117798;iRNA_m5C:0.999536710976339 30747 chr1 222898821 222898821 1 + T C OV 222898817 + 222898797 222898837 41 TCATCTCCCAAAACTCATTACACCTGCGGAAAAAGGAAGAG TCATCTCCCAAAACTCATTACACCCGCGGAAAAAGGAAGAG < 41bp 1 0.275538350641851 1 0.108609080314636 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BROX ENSG00000162819 CDS Human protein_coding chr1:222898817 chr1:222898821 synonymous SNV . 0 25 hm5C_associated_SNPs_30574 0 0 1 0 2 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_30747 DeepMRMD:1;iRNA_m5C:0.999536712157815 30748 chr15 81221505 81221505 1 + C A OV 81221501 + 81221481 81221521 41 TTGGACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGT TTGGACCATAGCGGAAGGACCCTCACTATAGGCCAGTAGGT < 41bp 1 0.0785937307172523 1 0.0326739549636841 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221501 chr15:81221505 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_30575 0 0 1 0 1 Nucleus 1 0.500231643921501 1 0.999536712156997 hm5C_site_30748 DeepMRMD:1;iRNA_m5C:0.999536712156997 30749 chr1 145115803 145115803 1 + A T OV 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTACTTGTACATGCATTCCACTTATGCCAAACTT < 41bp 1 0.0463206273930703 1 0.0865328907966614 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115803 . . 0 15 hm5C_associated_SNPs_30576 0 0 1 0 1 Cytosol 1 0.500231643877429 1 0.999536712245141 hm5C_site_30749 DeepMRMD:1;iRNA_m5C:0.999536712245141 30750 chr7 129394886 129394886 1 + C G OV 129394901 + 129394881 129394921 41 ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACGG ATGTAGCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACGG < 41bp 1 0.647074459043375 1 0.332285910844803 experiment 0.705851081913251 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394901 chr7:129394886 stopgain 1.000 1 6 hm5C_associated_SNPs_30579 0 0 1 0 1 chromatin 1 0.500231643923585 1 0.99953671215283 hm5C_site_30750 DeepMRMD:1;iRNA_m5C:0.99953671215283 30751 chr15 39876542 39876542 1 + T A OV 39876541 + 39876521 39876561 41 GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG GGCCAATGAGCTGAGGCGGCCACCCCTATGCTATCACAACG < 41bp 1 0.167622980043021 1 0.409961700439453 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876541 chr15:39876542 synonymous SNV . 0 22 hm5C_associated_SNPs_30580 0 0 1 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30751 DeepMRMD:1;iRNA_m5C:0.999536712157815 30752 chr8 145139714 145139714 1 + G T OV 145139712 + 145139692 145139732 41 TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCT TACTTGCTCCCCGGCCTCTCCCTCTTCGTCTCCATCGGCCT < 41bp 1 0.0801471332167941 1 0.0583536326885223 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139712 chr8:145139714 nonsynonymous SNV 0.990 2 23 hm5C_associated_SNPs_30581 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30752 DeepMRMD:1;iRNA_m5C:0.999536712157815 30753 chr19 10793341 10793341 1 + C T OV 10793360 + 10793340 10793380 41 CCACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAG CTACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAG < 41bp 1 0.126900405544781 1 0.0950523316860199 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793360 chr19:10793341 synonymous SNV . 0 2 hm5C_associated_SNPs_30582 0 0 1 0 1 Cytosol 1 0.500231645012244 1 0.999536709975512 hm5C_site_30753 DeepMRMD:1;iRNA_m5C:0.999536709975512 30754 chr19 10793341 10793341 1 + C T OV 10793361 + 10793341 10793381 41 CACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAGG TACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAGG < 41bp 1 0.520948994343315 1 0.245732367038727 experiment 0.95810201131337 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793361 chr19:10793341 synonymous SNV . 0 1 hm5C_associated_SNPs_30583 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30754 DeepMRMD:1;iRNA_m5C:0.999536712157815 30755 chr20 57480494 57480494 1 + C G OV 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGCGTGCCTGCTAGGAACGCTCCAACGA < 41bp 1 0.53664211154459 1 0.363990366458893 experiment 0.926715776910819 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480494 stopgain 0.763 0 27 hm5C_associated_SNPs_30584 0 0 1 0 2 Cytosol 1 0.500231020346398 1 0.999537959307204 hm5C_site_30755 DeepMRMD:1;iRNA_m5C:0.999537959307204 30756 chr20 57480494 57480494 1 + C G OV 57480512 + 57480492 57480532 41 TACGAACGCTCCAACGAGTACCAGCTGATTGACTGTGCCCA TAGGAACGCTCCAACGAGTACCAGCTGATTGACTGTGCCCA < 41bp 1 0.138616359259436 1 0.0944194793701172 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480512 chr20:57480494 stopgain 0.763 0 3 hm5C_associated_SNPs_30585 0 0 1 0 2 Cytosol 1 0.500231643854362 1 0.999536712291276 hm5C_site_30756 DeepMRMD:1;iRNA_m5C:0.999536712291276 30757 chr16 57787122 57787122 1 + G A OV 57787133 + 57787113 57787153 41 CCAACCCCAGCGCCCCCCTCCGGCGCATCTATGAGCGGCCC CCAACCCCAACGCCCCCCTCCGGCGCATCTATGAGCGGCCC < 41bp 1 0.577050205490409 1 0.740220546722412 experiment 0.845899589019183 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57787133 chr16:57787122 nonsynonymous SNV 0.001 0 10 hm5C_associated_SNPs_30586 0 0 0 0 1 Cytosol 1 0.500231643921092 0.519558906555176 0.999536712157815 hm5C_site_30757 DeepMRMD:0.519558906555176;iRNA_m5C:0.999536712157815 30758 chr17 27027974 27027974 1 + G C OV 27027991 + 27027971 27028011 41 CCAGCCCAGCAGCCAGTGGCCACACCACTAATGACCCCTAG CCACCCCAGCAGCCAGTGGCCACACCACTAATGACCCCTAG < 41bp 1 0.231583138388276 1 0.4397853910923 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27027991 chr17:27027974 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_30587 0 0 1 0 1 Cytosol 1 0.500231643894794 1 0.999536712210412 hm5C_site_30758 DeepMRMD:1;iRNA_m5C:0.999536712210412 30759 chr1 55524228 55524228 1 + G A OV 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGACCACAGCCGTCGCCCGCTGCGCCCCAG < 41bp 1 0.114348314328915 1 0.125695437192917 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524228 stopgain 0.004 1 14 hm5C_associated_SNPs_30588 0 0 1 0 2 Nucleus 1 0.500231639861371 1 0.999536720277258 hm5C_site_30759 DeepMRMD:1;iRNA_m5C:0.999536720277258 30760 chr1 55524228 55524228 1 + G A OV 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGACCACAGCCGTCGCCCGCTGCGCCCCAGA < 41bp 1 0.444949082794574 1 0.34857365489006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524228 stopgain 0.004 1 13 hm5C_associated_SNPs_30589 0 0 1 0 2 Nucleus 1 0.50023129201448 1 0.99953741597104 hm5C_site_30760 DeepMRMD:1;iRNA_m5C:0.99953741597104 30761 chr22 41735907 41735907 1 + C T OV 41735900 + 41735880 41735920 41 CCCGTGTTCCCCGGCGGGACCCCACTGCTACCACCTGTGGT CCCGTGTTCCCCGGCGGGACCCCACTGTTACCACCTGTGGT < 41bp 1 0.0673003976602233 1 0.0856137573719025 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735900 chr22:41735907 synonymous SNV . 0 28 hm5C_associated_SNPs_30591 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30761 DeepMRMD:1;iRNA_m5C:0.999536712157815 30762 chr17 16285382 16285382 1 + G A OV 16285385 + 16285365 16285405 41 GCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGCCATACTCTTTCTGACTACAACATCC < 41bp 1 0.349521343025431 1 0.218434929847717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBB ENSG00000170315 CDS Human protein_coding chr17:16285385 chr17:16285382 nonsynonymous SNV 0.985 0 18 hm5C_associated_SNPs_30592 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30762 DeepMRMD:1;iRNA_m5C:0.999536712157815 30763 chr15 91432751 91432751 1 + G C OV 91432750 + 91432730 91432770 41 GGCGCTGTCCCCCACAGGTCCGCACCTGACGTCCCACCCTG GGCGCTGTCCCCCACAGGTCCCCACCTGACGTCCCACCCTG < 41bp 1 0.139074854038611 1 0.0494334399700165 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FES ENSG00000182511 CDS Human protein_coding chr15:91432750 chr15:91432751 nonsynonymous SNV 0.320 0 22 hm5C_associated_SNPs_30593 0 0 1 0 1 cytosol 1 0.500231643921079 1 0.999536712157842 hm5C_site_30763 DeepMRMD:1;iRNA_m5C:0.999536712157842 30764 chr7 99780444 99780444 1 + C T OV 99780447 + 99780427 99780467 41 TTCAATGCTGTGAAAGCCGCCAAAAGTGACATGCAGGTAAA TTCAATGCTGTGAAAGCTGCCAAAAGTGACATGCAGGTAAA < 41bp 1 0.593876713199722 1 0.654157280921936 experiment 0.812246573600556 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG3 ENSG00000066923 CDS Human protein_coding chr7:99780447 chr7:99780444 synonymous SNV . 0 18 hm5C_associated_SNPs_30595 0 0 0 0 2 exosome 1 0.500231568994814 0.691685438156128 0.999536862010371 hm5C_site_30764 DeepMRMD:0.691685438156128;iRNA_m5C:0.999536862010371 30765 chr19 49377589 49377589 1 + G C OV 49377573 + 49377553 49377593 41 GATGAGGAAGAAGATGAGGACAGTGACTCTGGATCAGATGA GATGAGGAAGAAGATGAGGACAGTGACTCTGGATCACATGA < 41bp 1 0.318605799372974 1 0.196166783571243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377573 chr19:49377589 nonsynonymous SNV 0.192 0 37 hm5C_associated_SNPs_30596 0 0 1 0 0 Cytosol 1 0.500231643774753 1 0.999536712450495 hm5C_site_30765 DeepMRMD:1;iRNA_m5C:0.999536712450495 30766 chr19 49377589 49377589 1 + G C OV 49377579 + 49377559 49377599 41 GAAGAAGATGAGGACAGTGACTCTGGATCAGATGAGGAAGA GAAGAAGATGAGGACAGTGACTCTGGATCACATGAGGAAGA < 41bp 1 0.383295844061065 1 0.238874465227127 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377579 chr19:49377589 nonsynonymous SNV 0.192 0 31 hm5C_associated_SNPs_30597 0 0 1 0 0 Cytosol 1 0.500231245742561 1 0.999537508514879 hm5C_site_30766 DeepMRMD:1;iRNA_m5C:0.999537508514879 30767 chr19 49377589 49377589 1 + G C OV 49377587 + 49377567 49377607 41 TGAGGACAGTGACTCTGGATCAGATGAGGAAGAGGGAGAAG TGAGGACAGTGACTCTGGATCACATGAGGAAGAGGGAGAAG < 41bp 1 0.408141171564937 1 0.0760107040405273 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377587 chr19:49377589 nonsynonymous SNV 0.192 0 23 hm5C_associated_SNPs_30598 0 0 1 0 0 Cytosol 1 0.500231643863363 1 0.999536712273273 hm5C_site_30767 DeepMRMD:1;iRNA_m5C:0.999536712273273 30768 chr19 49377957 49377957 1 + G C OV 49377943 + 49377923 49377963 41 ACTTCAGGGGCTGGGGATATCGACCTGGAAAAGAGACAGAG ACTTCAGGGGCTGGGGATATCGACCTGGAAAAGACACAGAG < 41bp 1 0.69389440725451 1 0.807727873325348 experiment 0.612211185490981 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377943 chr19:49377957 nonsynonymous SNV 0.007 0 35 hm5C_associated_SNPs_30599 0 0 1 0 0 Cytosol 1 0.500231643921093 0.384544253349304 0.999536712157815 hm5C_site_30768 DeepMRMD:0.384544253349304;iRNA_m5C:0.999536712157815 30769 chr4 48384735 48384735 1 + C T OV 48384732 + 48384712 48384752 41 TATGCATCATGCAGTATACCCTGCTGTTAACAGGTTTTCAC TATGCATCATGCAGTATACCCTGTTGTTAACAGGTTTTCAC < 41bp 1 0.394846403533757 1 0.0264690816402435 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48384732 chr4:48384735 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_30600 0 0 1 0 0 Cytosol 1 0.500231685295173 1 0.999536629409653 hm5C_site_30769 DeepMRMD:1;iRNA_m5C:0.999536629409653 30770 chr16 67915660 67915660 1 + G T OV 67915640 + 67915620 67915660 41 GAGAGCTGGCAGAGCTGCGGCACAGCCAGGAAGAGCTGCTG GAGAGCTGGCAGAGCTGCGGCACAGCCAGGAAGAGCTGCTT < 41bp 1 0.387920805570599 1 0.180884748697281 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915640 chr16:67915660 synonymous SNV . 0 41 hm5C_associated_SNPs_30601 0 0 1 0 2 Cytosol 1 0.500231643921096 1 0.999536712157809 hm5C_site_30770 DeepMRMD:1;iRNA_m5C:0.999536712157809 30771 chr11 67017881 67017881 1 + A C OV 67017891 + 67017871 67017911 41 GAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACGCTAC GAAAGCCAAGCTCCGGGGATCGTACCTCACTGTCACGCTAC < 41bp 1 0.114762183051913 1 0.142388433218002 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67017891 chr11:67017881 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_30602 0 0 1 0 0 Cytosol 1 0.500231643872702 1 0.999536712254596 hm5C_site_30771 DeepMRMD:1;iRNA_m5C:0.999536712254596 30772 chr19 30936288 30936288 1 + T A OV 30936308 + 30936288 30936328 41 TTTTTGTCACACGGGCTGAACCAGACTCTCGAGTATAACCT ATTTTGTCACACGGGCTGAACCAGACTCTCGAGTATAACCT < 41bp 1 0.338745794346692 1 0.0555409789085388 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936308 chr19:30936288 nonsynonymous SNV 0.989 1 1 hm5C_associated_SNPs_30603 0 0 1 0 0 exosome 1 0.500231643284757 1 0.999536713430486 hm5C_site_30772 DeepMRMD:1;iRNA_m5C:0.999536713430486 30773 chr10 118318717 118318717 1 + G A OV 118318713 + 118318693 118318733 41 GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCTGG GGCTGCCCACAGATGGGTCACTATACTGATAGATATCCTGG < 41bp 1 0.454647860020521 1 0.163272589445114 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318713 chr10:118318717 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_30604 0 0 0 0 2 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_30773 DeepMRMD:1;iRNA_m5C:0.999536712157816 30774 chr10 118318717 118318717 1 + G A OV 118318718 + 118318698 118318738 41 CCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAAA CCCACAGATGGGTCACTATACTGATAGATATCCTGGGAAAA < 41bp 1 0.566532741538504 1 0.117204070091248 experiment 0.866934516922992 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318718 chr10:118318717 nonsynonymous SNV 0.998 5 20 hm5C_associated_SNPs_30605 0 0 0 0 2 unknown 1 0.500231645074775 1 0.99953670985045 hm5C_site_30774 DeepMRMD:1;iRNA_m5C:0.99953670985045 30775 chr10 118318717 118318717 1 + G A OV 118318729 + 118318709 118318749 41 GTCACTATGCTGATAGATATCCTGGGAAAACAAATGATGTG GTCACTATACTGATAGATATCCTGGGAAAACAAATGATGTG < 41bp 1 0.501886456968536 1 0.568340539932251 experiment 0.996227086062928 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318729 chr10:118318717 nonsynonymous SNV 0.998 5 9 hm5C_associated_SNPs_30606 0 0 0 0 2 unknown 1 0.500231853057169 0.863318920135498 0.999536293885661 hm5C_site_30775 DeepMRMD:0.863318920135498;iRNA_m5C:0.999536293885661 30776 chr21 34926420 34926420 1 + T A OV 34926429 + 34926409 34926449 41 TAAATATGATGTTGATTTATCTTTAACTACTCAAGATACTG TAAATATGATGATGATTTATCTTTAACTACTCAAGATACTG < 41bp 1 0.100808118852444 1 0.131414145231247 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SON ENSG00000159140 CDS Human protein_coding chr21:34926429 chr21:34926420 nonsynonymous SNV 0.998 3 12 hm5C_associated_SNPs_30607 0 0 1 0 0 Nucleus 1 0.500231801434348 1 0.999536397131304 hm5C_site_30776 DeepMRMD:1;iRNA_m5C:0.999536397131304 30777 chr11 61404818 61404818 1 + G A OV 61404820 + 61404800 61404840 41 GAGGGTGTCCGCAATGTTGCCGGTGTCTGTCCGCAGATCCA GAGGGTGTCCGCAATGTTACCGGTGTCTGTCCGCAGATCCA < 41bp 1 0.478634320903562 1 0.769654333591461 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404820 chr11:61404818 . . 0 19 hm5C_associated_SNPs_30608 0 0 1 0 0 unknown 1 0.500231645890978 0.460691332817078 0.999536708218044 hm5C_site_30777 DeepMRMD:0.460691332817078;iRNA_m5C:0.999536708218044 30778 chr1 153724847 153724847 1 + T C OV 153724860 + 153724840 153724880 41 AAGATATTATCCATAATCCTCAGGCCTTGAGTCCTCAGTTC AAGATATCATCCATAATCCTCAGGCCTTGAGTCCTCAGTTC < 41bp 1 0.584878546613443 1 0.829707980155945 experiment 0.830242906773114 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout INTS3 ENSG00000143624 CDS Human protein_coding chr1:153724860 chr1:153724847 synonymous SNV . 0 8 hm5C_associated_SNPs_30609 0 0 1 0 2 chromatin 1 0.500231643921387 0.34058403968811 0.999536712157225 hm5C_site_30778 DeepMRMD:0.34058403968811;iRNA_m5C:0.999536712157225 30779 chr12 53671331 53671331 1 + T G OV 53671316 + 53671296 53671336 41 GAGGAATTTGAAGTCAATGACCTGAACTATGAAGATAAACT GAGGAATTTGAAGTCAATGACCTGAACTATGAAGAGAAACT < 41bp 1 0.0748237751717975 1 0.0739199221134186 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671316 chr12:53671331 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_30610 0 0 1 0 1 Nucleus 1 0.500231658300881 1 0.999536683398237 hm5C_site_30779 DeepMRMD:1;iRNA_m5C:0.999536683398237 30780 chr3 25542776 25542776 1 + G A OV 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGCCAATACTGTCAACTCCAGAAGTGCTT < 41bp 1 0.206951015929681 1 0.081779807806015 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542776 nonsynonymous SNV 0.999 5 26 hm5C_associated_SNPs_30611 0 0 1 0 1 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_30780 DeepMRMD:1;iRNA_m5C:0.999536712157815 30781 chr19 50158050 50158050 1 + A C OV 50158043 + 50158023 50158063 41 CTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCGGGCT CTGGGGGGCTGCGGTTCGACCCCCCCCCCCCCCACCGGGCT < 41bp 1 0.133970265194745 1 0.198409676551819 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50158043 chr19:50158050 nonsynonymous SNV 0.962 2 28 hm5C_associated_SNPs_30612 0 0 1 0 1 Cytosol 1 0.500231643921104 1 0.999536712157792 hm5C_site_30781 DeepMRMD:1;iRNA_m5C:0.999536712157792 30782 chr20 39986958 39986958 1 + G T OV 39986960 + 39986940 39986980 41 GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA GTTTCTGCCCCACGGACATCCCTTCTATGCTGCCTTTGGGA < 41bp 1 0.0160447735555366 1 0.186748504638672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986960 chr20:39986958 nonsynonymous SNV 0.676 1 19 hm5C_associated_SNPs_30613 0 0 1 2 2 Nucleus 1 0.50023164392109 1 0.99953671215782 hm5C_site_30782 DeepMRMD:1;iRNA_m5C:0.99953671215782 30783 chr5 37026373 37026373 1 + A G OV 37026368 + 37026348 37026388 41 ATTCCAGAAACTCTGGTTTACTCCAACTCCACACAATGACA ATTCCAGAAACTCTGGTTTACTCCAGCTCCACACAATGACA < 41bp 1 0.469789095397254 1 0.900192856788635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:37026368 chr5:37026373 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_30615 0 0 1 0 2 Nucleus 1 0.500231644352261 0.19961428642273 0.999536711295477 hm5C_site_30783 DeepMRMD:0.19961428642273;iRNA_m5C:0.999536711295477 30784 chr19 14674819 14674819 1 + C T OV 14674820 + 14674800 14674840 41 CTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCTT CTAACAGAGTACGCGGGGCTCCTTTTCATCTACCTGCTCTT < 41bp 1 0.0479729724640359 1 0.0168598592281342 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674820 chr19:14674819 nonsynonymous SNV 0.988 4 20 hm5C_associated_SNPs_30616 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_30784 DeepMRMD:1;iRNA_m5C:0.999536712157816 30785 chr8 27369405 27369405 1 + G C OV 27369415 + 27369395 27369435 41 AGTGACATGAGCCATGGGTACGTGACAGTAAAGGTGAGTCA AGTGACATGACCCATGGGTACGTGACAGTAAAGGTGAGTCA < 41bp 1 0.650441474864302 1 0.20956027507782 experiment 0.699117050271396 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27369415 chr8:27369405 nonsynonymous SNV 0.398 0 11 hm5C_associated_SNPs_30617 0 0 1 0 2 Cytosol 1 0.500231668080798 1 0.999536663838404 hm5C_site_30785 DeepMRMD:1;iRNA_m5C:0.999536663838404 30786 chr1 228468293 228468293 1 + G A OV 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCAGAGGAGCGCGGCACCCTGACCCTGCAGTGTGAAGT < 41bp 1 0.0647576229775947 1 0.0270332098007202 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468293 nonsynonymous SNV 0.832 0 25 hm5C_associated_SNPs_30618 0 0 0 0 1 Ribosome 1 0.500231643470965 1 0.999536713058069 hm5C_site_30786 DeepMRMD:1;iRNA_m5C:0.999536713058069 30787 chr8 77620152 77620152 1 + T C OV 77620172 + 77620152 77620192 41 TTGAAGTGTATTGCCATTGGCAACCCTGTTCACCTAAAATG CTGAAGTGTATTGCCATTGGCAACCCTGTTCACCTAAAATG < 41bp 1 0.0842523242732 1 0.0640348494052887 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77620172 chr8:77620152 synonymous SNV . 0 1 hm5C_associated_SNPs_30619 0 0 1 0 0 Ribosome 1 0.500231643921332 1 0.999536712157337 hm5C_site_30787 DeepMRMD:1;iRNA_m5C:0.999536712157337 30788 chr12 112321461 112321461 1 + A C OV 112321465 + 112321445 112321485 41 TTTTACTCCAAACACCACAGCCGGACTATCCCAAAGGATAT TTTTACTCCAAACACCCCAGCCGGACTATCCCAAAGGATAT < 41bp 1 0.358291908171135 1 0.0986407697200775 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321465 chr12:112321461 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_30620 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30788 DeepMRMD:1;iRNA_m5C:0.999536712157815 30789 chr12 112321461 112321461 1 + A C OV 112321470 + 112321450 112321490 41 CTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAA CTCCAAACACCCCAGCCGGACTATCCCAAAGGATATGCGAA < 41bp 1 0.0428542775445899 1 0.0657415688037872 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321470 chr12:112321461 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_30621 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30789 DeepMRMD:1;iRNA_m5C:0.999536712157815 30790 chr16 89627459 89627459 1 + G A OV 89627445 + 89627425 89627465 41 CGGCGCGTGGCCACGTGGTTCAACCAGCCGGCCCGTAAGAT CGGCGCGTGGCCACGTGGTTCAACCAGCCGGCCCATAAGAT < 41bp 1 0.297749493251565 1 0.0844106674194336 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627445 chr16:89627459 nonsynonymous SNV 0.922 1 35 hm5C_associated_SNPs_30622 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_30790 DeepMRMD:1;iRNA_m5C:0.999536712157814 30791 chr16 89627459 89627459 1 + G A OV 89627456 + 89627436 89627476 41 CACGTGGTTCAACCAGCCGGCCCGTAAGATCCGCAGGTGAG CACGTGGTTCAACCAGCCGGCCCATAAGATCCGCAGGTGAG < 41bp 1 0.0808691826824552 1 0.156697958707809 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627456 chr16:89627459 nonsynonymous SNV 0.922 1 24 hm5C_associated_SNPs_30623 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_30791 DeepMRMD:1;iRNA_m5C:0.999536712157815 30792 chr7 4823018 4823018 1 + G C OV 4823023 + 4823003 4823043 41 GAGCCGGCAGCCTGAGGGACCCAGCCTCAGACACCTCCTCC GAGCCGGCAGCCTGACGGACCCAGCCTCAGACACCTCCTCC < 41bp 1 0.162148464634259 1 0.269451320171356 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4823023 chr7:4823018 nonsynonymous SNV 0.975 1 16 hm5C_associated_SNPs_30625 0 0 1 0 0 chromatin 1 0.500231679210921 1 0.999536641578158 hm5C_site_30792 DeepMRMD:1;iRNA_m5C:0.999536641578158 30793 chr17 66526554 66526554 1 + C A OV 66526558 + 66526538 66526578 41 TCCTCAAACGAAACATCCAGCAGTACAACAGTTTTGTGTCA TCCTCAAACGAAACATACAGCAGTACAACAGTTTTGTGTCA < 41bp 1 0.512907832019169 1 0.858319997787476 experiment 0.974184335961662 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66526558 chr17:66526554 synonymous SNV . 0 17 hm5C_associated_SNPs_30626 0 0 1 0 0 Ribosome 1 0.500228052154589 0.283360004425048 0.999543895690822 hm5C_site_30793 DeepMRMD:0.283360004425048;iRNA_m5C:0.999543895690822 30794 chr1 33957275 33957275 1 + G T OV 33957260 + 33957240 33957280 41 ATGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCA ATGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGTCCCCA < 41bp 1 0.227649196586164 1 0.054297000169754 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957260 chr1:33957275 nonsynonymous SNV 0.628 0 36 hm5C_associated_SNPs_30629 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30794 DeepMRMD:1;iRNA_m5C:0.999536712157815 30795 chr1 33957275 33957275 1 + G T OV 33957261 + 33957241 33957281 41 TGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGGCCCCAG TGTTGAGTCTACCCAGGGGCCCAGGATTGCAGGGTCCCCAG < 41bp 1 0.617478189107561 1 0.365035951137543 experiment 0.765043621784878 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957261 chr1:33957275 nonsynonymous SNV 0.628 0 35 hm5C_associated_SNPs_30630 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30795 DeepMRMD:1;iRNA_m5C:0.999536712157815 30796 chr1 33957275 33957275 1 + G T OV 33957276 + 33957256 33957296 41 GGGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTC GGGGCCCAGGATTGCAGGGTCCCCAGCTCTGTTCCAGAGTC < 41bp 1 0.527206496340339 1 0.363594114780426 experiment 0.945587007319322 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957276 chr1:33957275 nonsynonymous SNV 0.628 0 20 hm5C_associated_SNPs_30631 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30796 DeepMRMD:1;iRNA_m5C:0.999536712157815 30797 chr1 33957275 33957275 1 + G T OV 33957277 + 33957257 33957297 41 GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCG GGGCCCAGGATTGCAGGGTCCCCAGCTCTGTTCCAGAGTCG < 41bp 1 0.253552329624231 1 0.0716045200824738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957277 chr1:33957275 nonsynonymous SNV 0.628 0 19 hm5C_associated_SNPs_30632 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30797 DeepMRMD:1;iRNA_m5C:0.999536712157815 30798 chr1 33957275 33957275 1 + G T OV 33957278 + 33957258 33957298 41 GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGT GGCCCAGGATTGCAGGGTCCCCAGCTCTGTTCCAGAGTCGT < 41bp 1 0.149182745444876 1 0.14897146821022 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957278 chr1:33957275 nonsynonymous SNV 0.628 0 18 hm5C_associated_SNPs_30633 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30798 DeepMRMD:1;iRNA_m5C:0.999536712157815 30799 chr1 33957275 33957275 1 + G T OV 33957279 + 33957259 33957299 41 GCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTA GCCCAGGATTGCAGGGTCCCCAGCTCTGTTCCAGAGTCGTA < 41bp 1 0.497559668481181 1 0.264049142599106 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957279 chr1:33957275 nonsynonymous SNV 0.628 0 17 hm5C_associated_SNPs_30634 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30799 DeepMRMD:1;iRNA_m5C:0.999536712157815 30800 chr9 35733472 35733472 1 + C G OV 35733471 + 35733451 35733491 41 TTATTCTGCCTGAGACACTTCCTCTCACTAAGGTAAGACTC TTATTCTGCCTGAGACACTTCGTCTCACTAAGGTAAGACTC < 41bp 1 0.131172453198794 1 0.134478688240051 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733471 chr9:35733472 nonsynonymous SNV 0.979 5 22 hm5C_associated_SNPs_30635 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644129765 1 0.99953671174047 hm5C_site_30800 DeepMRMD:1;iRNA_m5C:0.99953671174047 30801 chr1 112999421 112999421 1 + G A OV 112999436 + 112999416 112999456 41 TAAGCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACC TAAGCATTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACC < 41bp 1 0.48554816549704 1 0.54713374376297 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999436 chr1:112999421 nonsynonymous SNV 0.182 3 6 hm5C_associated_SNPs_30636 0 0 0 0 0 Ribosome 1 0.500231643921092 0.90573251247406 0.999536712157815 hm5C_site_30801 DeepMRMD:0.90573251247406;iRNA_m5C:0.999536712157815 30802 chr1 112999421 112999421 1 + G A OV 112999439 + 112999419 112999459 41 GCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGT GCATTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGT < 41bp 1 0.541170519001255 1 0.480989217758179 experiment 0.917658961997489 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999439 chr1:112999421 nonsynonymous SNV 0.182 3 3 hm5C_associated_SNPs_30637 0 0 0 0 0 Ribosome 1 0.500231643857394 1 0.999536712285211 hm5C_site_30802 DeepMRMD:1;iRNA_m5C:0.999536712285211 30803 chr7 100275155 100275155 1 + T C OV 100275144 + 100275124 100275164 41 CACGCCATCCCGCTGCGCTCCTCCTGGGTAATGACCTGTGC CACGCCATCCCGCTGCGCTCCTCCTGGGTAACGACCTGTGC < 41bp 1 0.567876470677547 1 0.672003328800201 experiment 0.864247058644906 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275144 chr7:100275155 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_30638 0 0 1 0 1 Cytosol 1 0.500231643921134 0.655993342399598 0.999536712157733 hm5C_site_30803 DeepMRMD:0.655993342399598;iRNA_m5C:0.999536712157733 30804 chr11 73638333 73638333 1 + G T OV 73638335 + 73638315 73638355 41 ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCTA ATTCTTGTGTTTTAGGTATCCACATGGGAGAAGCAGATCTA < 41bp 1 0.637289323793687 1 0.769887924194336 experiment 0.725421352412626 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73638335 chr11:73638333 nonsynonymous SNV 0.998 1 19 hm5C_associated_SNPs_30639 0 0 0 0 1 Ribosome 1 0.500231667018381 0.460224151611328 0.999536665963238 hm5C_site_30804 DeepMRMD:0.460224151611328;iRNA_m5C:0.999536665963238 30805 chr1 235543451 235543451 1 + C A OV 235543456 + 235543436 235543476 41 TTTTGCTGGTGTTGTCCCTCCCGTGGCAGGTAAGCAATTAT TTTTGCTGGTGTTGTACCTCCCGTGGCAGGTAAGCAATTAT < 41bp 1 0.176246387672108 1 0.284889161586761 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235543456 chr1:235543451 synonymous SNV . 0 16 hm5C_associated_SNPs_30640 0 0 1 0 1 chromatin 1 0.500231674592958 1 0.999536650814085 hm5C_site_30805 DeepMRMD:1;iRNA_m5C:0.999536650814085 30806 chr6 138576691 138576691 1 + G A OV 138576703 + 138576683 138576723 41 CGTCTCCGGGAGTGTCTGACCACGGCCGAGGATCAGGCTGC CGTCTCCGAGAGTGTCTGACCACGGCCGAGGATCAGGCTGC < 41bp 1 0.685725799026388 1 0.665633380413055 experiment 0.628548401947225 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF3 ENSG00000112379 CDS Human protein_coding chr6:138576703 chr6:138576691 nonsynonymous SNV 0.037 3 9 hm5C_associated_SNPs_30642 0 0 1 0 0 Nucleus 1 0.500231643921118 0.66873323917389 0.999536712157765 hm5C_site_30806 DeepMRMD:0.66873323917389;iRNA_m5C:0.999536712157765 30807 chrX 70514365 70514365 1 + T C OV 70514364 + 70514344 70514384 41 GACAGATGCAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT GACAGATGCAGTGAAGGCTCCCTCCTGCTAACCACGTAAGT < 41bp 1 0.0353874363981741 1 0.114068984985352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70514364 chrX:70514365 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_30643 0 0 1 0 1 Nucleus 1 0.500231643902101 1 0.999536712195798 hm5C_site_30807 DeepMRMD:1;iRNA_m5C:0.999536712195798 30808 chr6 35436212 35436212 1 + A G OV 35436201 + 35436181 35436221 41 CTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCATGAGGTGAG CTCTTTTCCGGTTAGCGCGGCGTGAGAAGCCGTGAGGTGAG < 41bp 1 0.381422416864752 1 0.545650780200958 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35436201 chr6:35436212 nonsynonymous SNV 0.621 1 32 hm5C_associated_SNPs_30645 0 0 1 0 1 Cytosol 1 0.500231643921093 0.908698439598084 0.999536712157814 hm5C_site_30808 DeepMRMD:0.908698439598084;iRNA_m5C:0.999536712157814 30809 chr2 32617172 32617172 1 + G C OV 32617180 + 32617160 32617200 41 ATGTAGGCTATAGGTGGGCACAACCAGATCCCATGGCTCAA ATGTAGGCTATACGTGGGCACAACCAGATCCCATGGCTCAA < 41bp 1 0.100123823808229 1 0.0738645195960999 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32617180 chr2:32617172 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_30646 0 0 1 0 2 Nucleus 1 0.500231644565504 1 0.999536710868992 hm5C_site_30809 DeepMRMD:1;iRNA_m5C:0.999536710868992 30810 chr19 10812854 10812854 1 + C G OV 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTGCGCTTCCGCTCCCCCTACGACGGCAATGAGA < 41bp 1 0.200787120714418 1 0.0512370765209198 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812854 synonymous SNV . 0 10 hm5C_associated_SNPs_30647 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_30810 DeepMRMD:1;iRNA_m5C:0.999536712157815 30811 chr21 34925258 34925258 1 + G A OV 34925277 + 34925257 34925297 41 AGTATCAGAGGCTGCTGTGACTGTTCCAGAACCACCACCAG AATATCAGAGGCTGCTGTGACTGTTCCAGAACCACCACCAG < 41bp 1 0.259884361633687 1 0.720857381820679 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SON ENSG00000159140 CDS Human protein_coding chr21:34925277 chr21:34925258 nonsynonymous SNV 0.995 0 2 hm5C_associated_SNPs_30648 0 0 1 0 0 Nucleus 1 0.500231643921092 0.558285236358642 0.999536712157815 hm5C_site_30811 DeepMRMD:0.558285236358642;iRNA_m5C:0.999536712157815 30812 chr5 179195982 179195982 1 + G T OV 179195992 + 179195972 179196012 41 CCGCTGTAATGAAGCAGCATCAGTTGCTTTTGGACCAACAG CCGCTGTAATTAAGCAGCATCAGTTGCTTTTGGACCAACAG < 41bp 1 0.0782794448853076 1 0.42492413520813 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAML1 ENSG00000161021 CDS Human protein_coding chr5:179195992 chr5:179195982 nonsynonymous SNV 0.849 2 11 hm5C_associated_SNPs_30650 0 0 1 0 0 Ribosome 1 0.500231639513925 1 0.99953672097215 hm5C_site_30812 DeepMRMD:1;iRNA_m5C:0.99953672097215 30813 chr20 37580954 37580954 1 + G T OV 37580957 + 37580937 37580977 41 TGGGCACCCCCCACCTGGAACTGTACTTGAGTGACTCACTT TGGGCACCCCCCACCTGTAACTGTACTTGAGTGACTCACTT < 41bp 1 0.418274607498304 1 0.130797058343887 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37580957 chr20:37580954 stopgain 0.981 0 18 hm5C_associated_SNPs_30651 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_30813 DeepMRMD:1;iRNA_m5C:0.999536712157817 30814 chr12 123892121 123892121 1 + C T OV 123892103 + 123892083 123892123 41 AATCACAGCAAATGTGGGAACTGCCAAACCAAACTGCACGA AATCACAGCAAATGTGGGAACTGCCAAACCAAACTGCATGA < 41bp 1 0.428143382018855 1 0.299770653247833 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123892103 chr12:123892121 synonymous SNV . 0 39 hm5C_associated_SNPs_30652 0 0 1 0 0 Cytosol 1 0.500231643895746 1 0.999536712208507 hm5C_site_30814 DeepMRMD:1;iRNA_m5C:0.999536712208507 30815 chr10 5963488 5963488 1 + C T OV 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT TGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.103022393530957 1 0.520311057567596 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963488 nonsynonymous SNV 0.787 5 1 hm5C_associated_SNPs_30653 0 0 1 0 2 Ribosome 1 0.500231643921092 0.959377884864808 0.999536712157815 hm5C_site_30815 DeepMRMD:0.959377884864808;iRNA_m5C:0.999536712157815 30816 chr1 44878386 44878386 1 + A T OV 44878373 + 44878353 44878393 41 ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGATTGACAGA < 41bp 1 0.527751864673167 1 0.148510247468948 experiment 0.944496270653665 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878373 chr1:44878386 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_30654 0 0 1 0 1 Ribosome 1 0.500231643921426 1 0.999536712157148 hm5C_site_30816 DeepMRMD:1;iRNA_m5C:0.999536712157148 30817 chr1 44878386 44878386 1 + A T OV 44878382 + 44878362 44878402 41 CCTCATCTAGCCCAGAGGATCGGAATGACAGATGTAAGTAC CCTCATCTAGCCCAGAGGATCGGATTGACAGATGTAAGTAC < 41bp 1 0.389342592205928 1 0.313379347324371 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878382 chr1:44878386 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_30655 0 0 1 0 1 Ribosome 1 0.500231643920564 1 0.999536712158871 hm5C_site_30817 DeepMRMD:1;iRNA_m5C:0.999536712158871 30818 chr1 156096688 156096688 1 + C T OV 156096700 + 156096680 156096720 41 GACACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGG GACACGGGTGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGG < 41bp 1 0.201616661529678 1 0.150739818811417 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096700 chr1:156096688 nonsynonymous SNV 0.002 2 9 hm5C_associated_SNPs_30656 0 0 0 0 1 Cytosol 1 0.500231643921152 1 0.999536712157696 hm5C_site_30818 DeepMRMD:1;iRNA_m5C:0.999536712157696 30819 chr1 156096688 156096688 1 + C T OV 156096703 + 156096683 156096723 41 ACGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT ACGGGTGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATT < 41bp 1 0.110684250929235 1 0.10418489575386 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096703 chr1:156096688 nonsynonymous SNV 0.002 2 6 hm5C_associated_SNPs_30657 0 0 0 0 1 Cytosol 1 0.500231643921165 1 0.99953671215767 hm5C_site_30819 DeepMRMD:1;iRNA_m5C:0.99953671215767 30820 chr1 156096688 156096688 1 + C T OV 156096704 + 156096684 156096724 41 CGGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT CGGGTGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTT < 41bp 1 0.166948080654243 1 0.0955112278461456 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096704 chr1:156096688 nonsynonymous SNV 0.002 2 5 hm5C_associated_SNPs_30658 0 0 0 0 1 Cytosol 1 0.500231643285432 1 0.999536713429137 hm5C_site_30820 DeepMRMD:1;iRNA_m5C:0.999536713429137 30821 chr1 156096688 156096688 1 + C T OV 156096705 + 156096685 156096725 41 GGGCGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC GGGTGAAGCCAGGGTCTCCCCTGTGAGCACTAGAGGATTTC < 41bp 1 0.383114337502063 1 0.0995477437973022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156096705 chr1:156096688 nonsynonymous SNV 0.002 2 4 hm5C_associated_SNPs_30659 0 0 0 0 1 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_30821 DeepMRMD:1;iRNA_m5C:0.999536712157813 30822 chr1 171763639 171763639 1 + G T OV 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAATCTTTTCTACATAAGGTTAAAA < 41bp 1 0.136525446984806 1 0.0725292563438416 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763639 nonsynonymous SNV 0.993 4 31 hm5C_associated_SNPs_30661 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30822 DeepMRMD:1;iRNA_m5C:0.999536712157815 30823 chr13 114175027 114175027 1 + C A OV 114175039 + 114175019 114175059 41 CATACAGGCGGGCGCCAGTGCATCTTCTAGGTAAACGCTTT CATACAGGAGGGCGCCAGTGCATCTTCTAGGTAAACGCTTT < 41bp 1 0.214281762553777 1 0.257477909326553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114175039 chr13:114175027 nonsynonymous SNV 0.092 2 9 hm5C_associated_SNPs_30662 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30823 DeepMRMD:1;iRNA_m5C:0.999536712157815 30824 chr19 13063845 13063845 1 + G C OV 13063834 + 13063814 13063854 41 AGAACTTGGCTGCCAACTTCCTCCTGAGTCAGAACTTTGAT AGAACTTGGCTGCCAACTTCCTCCTGAGTCACAACTTTGAT < 41bp 1 0.451576358789549 1 0.573380470275879 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD23A ENSG00000179262 CDS Human protein_coding chr19:13063834 chr19:13063845 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_30663 0 0 1 0 1 Ribosome 1 0.50023164392071 0.853239059448242 0.99953671215858 hm5C_site_30824 DeepMRMD:0.853239059448242;iRNA_m5C:0.99953671215858 30825 chr12 69119562 69119562 1 + T C OV 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTCTTATCCCGGGAGACATTGATGGTAA < 41bp 1 0.649168676616222 1 0.431593060493469 experiment 0.701662646767556 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119562 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_30665 0 0 1 0 2 chromatin 1 0.500231643920509 1 0.999536712158982 hm5C_site_30825 DeepMRMD:1;iRNA_m5C:0.999536712158982 30826 chr17 41570223 41570223 1 + C T OV 41570239 + 41570219 41570259 41 GGAGCAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACCGG GGAGTAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACCGG < 41bp 1 0.452490832363119 1 0.661772668361664 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570239 chr17:41570223 synonymous SNV . 0 5 hm5C_associated_SNPs_30666 0 0 1 0 0 Cytosol 1 0.500231643921092 0.676454663276672 0.999536712157815 hm5C_site_30826 DeepMRMD:0.676454663276672;iRNA_m5C:0.999536712157815 30827 chr17 41570223 41570223 1 + C T OV 41570240 + 41570220 41570260 41 GAGCAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACCGGG GAGTAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACCGGG < 41bp 1 0.340866504451455 1 0.762595772743225 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570240 chr17:41570223 synonymous SNV . 0 4 hm5C_associated_SNPs_30667 0 0 1 0 0 Cytosol 1 0.50023164111156 0.47480845451355 0.999536717776879 hm5C_site_30827 DeepMRMD:0.47480845451355;iRNA_m5C:0.999536717776879 30828 chr8 144332294 144332294 1 + G A OV 144332280 + 144332260 144332300 41 AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCGGATCTT AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCAGATCTT < 41bp 1 0.202357655258749 1 0.180901616811752 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP41 ENSG00000181638;ENSG00000264668 CDS Human other chr8:144332280 chr8:144332294 nonsynonymous SNV 0.132 0 35 hm5C_associated_SNPs_30668 0 0 1 1 0 chromatin 1 0.500231655254712 1 0.999536689490576 hm5C_site_30828 DeepMRMD:1;iRNA_m5C:0.999536689490576 30829 chr7 150769146 150769146 1 + T C OV 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT CCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT < 41bp 1 0.0654912471467895 1 0.0467804372310638 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769146 nonsynonymous SNV 0.995 2 1 hm5C_associated_SNPs_30669 0 0 1 0 1 Ribosome 1 0.500231643921297 1 0.999536712157406 hm5C_site_30829 DeepMRMD:1;iRNA_m5C:0.999536712157406 30830 chr18 60642777 60642777 1 + G A OV 60642776 + 60642756 60642796 41 TCTCTGTCGAAATGGAAAGCCGCTGCCTCTGTCCAGATCTT TCTCTGTCGAAATGGAAAGCCACTGCCTCTGTCCAGATCTT < 41bp 1 0.0976749863749848 1 0.167920917272568 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60642776 chr18:60642777 synonymous SNV . 0 22 hm5C_associated_SNPs_30670 0 0 1 0 1 Cytosol 1 0.50023164391869 1 0.99953671216262 hm5C_site_30830 DeepMRMD:1;iRNA_m5C:0.99953671216262 30831 chr16 57144714 57144714 1 + G C OV 57144695 + 57144675 57144715 41 GGGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGT GGGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCACT < 41bp 1 0.212488596220942 1 0.304171293973923 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144695 chr16:57144714 nonsynonymous SNV 0.793 1 40 hm5C_associated_SNPs_30671 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30831 DeepMRMD:1;iRNA_m5C:0.999536712157815 30832 chr16 57144714 57144714 1 + G C OV 57144698 + 57144678 57144718 41 TGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATT TGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCACTATT < 41bp 1 0.194201838848263 1 0.453797340393066 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144698 chr16:57144714 nonsynonymous SNV 0.793 1 37 hm5C_associated_SNPs_30672 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30832 DeepMRMD:1;iRNA_m5C:0.999536712157815 30833 chr16 57144714 57144714 1 + G C OV 57144700 + 57144680 57144720 41 CCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGC CCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCACTATTGC < 41bp 1 0.353218136848383 1 0.414362460374832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144700 chr16:57144714 nonsynonymous SNV 0.793 1 35 hm5C_associated_SNPs_30674 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30833 DeepMRMD:1;iRNA_m5C:0.999536712157815 30834 chr16 57144714 57144714 1 + G C OV 57144701 + 57144681 57144721 41 CCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGCG CCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCACTATTGCG < 41bp 1 0.288936815574768 1 0.447475254535675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144701 chr16:57144714 nonsynonymous SNV 0.793 1 34 hm5C_associated_SNPs_30675 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30834 DeepMRMD:1;iRNA_m5C:0.999536712157815 30835 chr1 22336283 22336283 1 + G T OV 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGT < 41bp 1 0.6033782445282 1 0.206564635038376 experiment 0.793243510943599 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336283 nonsynonymous SNV 0.244 4 41 hm5C_associated_SNPs_30676 0 0 0 0 1 Endoplasmic reticulum 1 0.500231678905778 1 0.999536642188444 hm5C_site_30835 DeepMRMD:1;iRNA_m5C:0.999536642188444 30836 chr1 22336283 22336283 1 + G T OV 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGTCTG < 41bp 1 0.128202536142532 1 0.0835152566432953 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336283 nonsynonymous SNV 0.244 4 38 hm5C_associated_SNPs_30677 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392107 1 0.99953671215786 hm5C_site_30836 DeepMRMD:1;iRNA_m5C:0.99953671215786 30837 chr1 22336283 22336283 1 + G T OV 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA CGGTGTGACCAGCTTTGTTTCTGCCTTTGTCTGCAACTTCA < 41bp 1 0.542835693875753 1 0.0516175627708435 experiment 0.914328612248495 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336283 nonsynonymous SNV 0.244 4 30 hm5C_associated_SNPs_30678 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642085435 1 0.99953671582913 hm5C_site_30837 DeepMRMD:1;iRNA_m5C:0.99953671582913 30838 chr1 22336283 22336283 1 + G T OV 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGACCAGCTTTGTTTCTGCCTTTGTCTGCAACTTCATCT < 41bp 1 0.0514903484355077 1 0.0134157836437225 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336283 nonsynonymous SNV 0.244 4 27 hm5C_associated_SNPs_30679 0 0 0 0 1 Endoplasmic reticulum 1 0.500231640815439 1 0.999536718369122 hm5C_site_30838 DeepMRMD:1;iRNA_m5C:0.999536718369122 30839 chr1 22336283 22336283 1 + G T OV 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGACCAGCTTTGTTTCTGCCTTTGTCTGCAACTTCATCTG < 41bp 1 0.278412149859528 1 0.0254333019256592 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336283 nonsynonymous SNV 0.244 4 26 hm5C_associated_SNPs_30680 0 0 0 0 1 Endoplasmic reticulum 1 0.500234263755297 1 0.999531472489405 hm5C_site_30839 DeepMRMD:1;iRNA_m5C:0.999531472489405 30840 chr1 22336283 22336283 1 + G T OV 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGCCTTTGTCTGCAACTTCATCTGGAAGCCCAC < 41bp 1 0.286907851353956 1 0.0899359583854675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336283 nonsynonymous SNV 0.244 4 17 hm5C_associated_SNPs_30681 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392114 1 0.99953671215772 hm5C_site_30840 DeepMRMD:1;iRNA_m5C:0.99953671215772 30841 chr1 22336283 22336283 1 + G T OV 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGTCTGCAACTTCATCTGGAAGCCCACGGT < 41bp 1 0.532012517172376 1 0.527647137641907 experiment 0.935974965655247 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336283 nonsynonymous SNV 0.244 4 14 hm5C_associated_SNPs_30682 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644630344 0.944705724716186 0.999536710739312 hm5C_site_30841 DeepMRMD:0.944705724716186;iRNA_m5C:0.999536710739312 30842 chr1 22336283 22336283 1 + G T OV 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGTCTGCAACTTCATCTGGAAGCCCACGGTGTT < 41bp 1 0.291637789884949 1 0.335430145263672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336283 nonsynonymous SNV 0.244 4 11 hm5C_associated_SNPs_30683 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921065 1 0.99953671215787 hm5C_site_30842 DeepMRMD:1;iRNA_m5C:0.99953671215787 30843 chr1 22336283 22336283 1 + G T OV 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC TCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC < 41bp 1 0.170546190664691 1 0.155985921621323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336283 nonsynonymous SNV 0.244 4 1 hm5C_associated_SNPs_30684 0 0 0 0 1 Endoplasmic reticulum 1 0.500230342586875 1 0.99953931482625 hm5C_site_30843 DeepMRMD:1;iRNA_m5C:0.99953931482625 30844 chr3 183898998 183898998 1 + G T OV 183899018 + 183898998 183899038 41 GATGAAACAAGCAAGAGGTGCCTGAGGCAGGAGAGCTGGTG TATGAAACAAGCAAGAGGTGCCTGAGGCAGGAGAGCTGGTG < 41bp 1 0.165504967819538 1 0.176973193883896 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899018 chr3:183898998 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_30685 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30844 DeepMRMD:1;iRNA_m5C:0.999536712157815 30845 chr3 61975339 61975339 1 + C G OV 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGTCAGGTGTGGGGGCCGTCACCAGTCTCCTATTGAC < 41bp 1 0.181087199693217 1 0.216757446527481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975339 nonsynonymous SNV 0.992 0 11 hm5C_associated_SNPs_30686 0 0 1 0 1 Ribosome 1 0.500231538209886 1 0.999536923580227 hm5C_site_30845 DeepMRMD:1;iRNA_m5C:0.999536923580227 30846 chr10 128830535 128830535 1 + C G OV 128830517 + 128830497 128830537 41 AGCATGCAGAGCCTTGGGAGCTGCACCATTAGCAAGGACTC AGCATGCAGAGCCTTGGGAGCTGCACCATTAGCAAGGAGTC < 41bp 1 0.424968999711291 1 0.333247661590576 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128830517 chr10:128830535 nonsynonymous SNV 0.983 4 39 hm5C_associated_SNPs_30688 0 0 1 0 1 Nucleus 1 0.500231643924186 1 0.999536712151629 hm5C_site_30846 DeepMRMD:1;iRNA_m5C:0.999536712151629 30847 chr7 103006586 103006586 1 + T G OV 103006582 + 103006562 103006602 41 ACAAAAAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGC ACAAAAAAAGCCTGCCTTATCTTCGTTGATGAAATTGATGC < 41bp 1 0.637123338320682 1 0.395138263702393 experiment 0.725753323358636 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103006582 chr7:103006586 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_30689 0 0 0 0 2 Ribosome 1 0.500231643921089 1 0.999536712157822 hm5C_site_30847 DeepMRMD:1;iRNA_m5C:0.999536712157822 30848 chr12 57569703 57569703 1 + C T OV 57569717 + 57569697 57569737 41 TTCAAGCCGTTCATCATTTTCTCCAACCGCCATGAAATCCG TTCAAGTCGTTCATCATTTTCTCCAACCGCCATGAAATCCG < 41bp 1 0.361698761612018 1 0.968522071838379 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57569717 chr12:57569703 nonsynonymous SNV 0.998 5 7 hm5C_associated_SNPs_30690 0 0 0 0 1 Exosome 1 0.500231645774169 0.062955856323242 0.999536708451662 hm5C_site_30848 DeepMRMD:0.062955856323242;iRNA_m5C:0.999536708451662 30849 chr12 57911116 57911116 1 + A C OV 57911135 + 57911115 57911155 41 CAGGTCCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTG CCGGTCCTCATACCAGGCTTCCAGCTCCCAGCTGGACAGTG < 41bp 1 0.156504845694194 1 0.0404290556907654 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911135 chr12:57911116 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_30692 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_30849 DeepMRMD:1;iRNA_m5C:0.999536712157814 30850 chr10 102763427 102763427 1 + C G OV 102763411 + 102763391 102763431 41 TGACGCAGCTGTTTGGGGGCCCTGCCTCCTCCTCCTCCTCT TGACGCAGCTGTTTGGGGGCCCTGCCTCCTCCTCCTGCTCT < 41bp 1 0.0492466840713827 1 0.0785460770130157 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102763411 chr10:102763427 nonsynonymous SNV 0.985 1 37 hm5C_associated_SNPs_30693 0 0 1 0 0 Ribosome 1 0.500231643921114 1 0.999536712157771 hm5C_site_30850 DeepMRMD:1;iRNA_m5C:0.999536712157771 30851 chr10 102763427 102763427 1 + C G OV 102763412 + 102763392 102763432 41 GACGCAGCTGTTTGGGGGCCCTGCCTCCTCCTCCTCCTCTT GACGCAGCTGTTTGGGGGCCCTGCCTCCTCCTCCTGCTCTT < 41bp 1 0.348353643711118 1 0.138051956892014 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102763412 chr10:102763427 nonsynonymous SNV 0.985 1 36 hm5C_associated_SNPs_30694 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_30851 DeepMRMD:1;iRNA_m5C:0.999536712157815 30852 chr1 156202165 156202165 1 + G C OV 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCGATCACACAGCAAATCTATGACAAGTTTATA < 41bp 1 0.0879671206532104 1 0.242846101522446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202165 nonsynonymous SNV 0.825 0 14 hm5C_associated_SNPs_30695 0 0 1 3 2 unknown 1 0.500231643913787 1 0.999536712172426 hm5C_site_30852 DeepMRMD:1;iRNA_m5C:0.999536712172426 30853 chr5 85915260 85915260 1 + G A OV 85915269 + 85915249 85915289 41 CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGA CCTTCCTTGTAATAAGACACCAACTGCTTAAAACATAAGGA < 41bp 1 0.32122180888525 1 0.415318995714188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COX7C ENSG00000127184;ENSG00000127184 exonic;splicing Human other chr5:85915269 chr5:85915260 nonsynonymous SNV 0.707 2 12 hm5C_associated_SNPs_30696 0 0 1 0 2 Ribosome 1 0.500231643919655 1 0.99953671216069 hm5C_site_30853 DeepMRMD:1;iRNA_m5C:0.99953671216069 30854 chrX 48564750 48564750 1 + A G OV 48564763 + 48564743 48564783 41 GACGTGTACACCGTGGATGCCGCCTACTATGGCAACATCTC GACGTGTGCACCGTGGATGCCGCCTACTATGGCAACATCTC < 41bp 1 0.295620423061307 1 0.439867913722992 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564763 chrX:48564750 nonsynonymous SNV 0.250 4 8 hm5C_associated_SNPs_30697 0 0 1 0 1 Ribosome 1 0.500231643887003 1 0.999536712225993 hm5C_site_30854 DeepMRMD:1;iRNA_m5C:0.999536712225993 30855 chr7 99956617 99956617 1 + T C OV 99956624 + 99956604 99956644 41 ACCAGTCTGTGTATTTCTGCCGAGTCGAGCTGGACACCCGG ACCAGTCTGTGTACTTCTGCCGAGTCGAGCTGGACACCCGG < 41bp 1 0.591185837244257 1 0.712899267673492 experiment 0.817628325511486 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956624 chr7:99956617 nonsynonymous SNV 0.158 1 14 hm5C_associated_SNPs_30699 0 0 1 0 0 Cytosol 1 0.506962196697382 0.574201464653016 0.986075606605236 hm5C_site_30855 DeepMRMD:0.574201464653016;iRNA_m5C:0.986075606605236 30856 chr5 140516545 140516545 1 + G A OV 140516546 + 140516526 140516566 41 TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTC TCCATCAACGCGGACAACGACCACCTGTTTGCCCTCAGGTC < 41bp 1 0.146975493902919 1 0.0479463338851929 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140516546 chr5:140516545 nonsynonymous SNV 0.899 3 20 hm5C_associated_SNPs_30701 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921098 1 0.999536712157804 hm5C_site_30856 DeepMRMD:1;iRNA_m5C:0.999536712157804 30857 chr5 71493396 71493396 1 + G A OV 71493379 + 71493359 71493399 41 AAAGTTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATC AAAGTTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGAATC < 41bp 1 0.178393597368951 1 0.28535383939743 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493379 chr5:71493396 nonsynonymous SNV 0.636 2 38 hm5C_associated_SNPs_30702 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30857 DeepMRMD:1;iRNA_m5C:0.999536712157815 30858 chr5 71493396 71493396 1 + G A OV 71493383 + 71493363 71493403 41 TTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATCCGAG TTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGAATCCGAG < 41bp 1 0.0348591679217916 1 0.105740308761597 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493383 chr5:71493396 nonsynonymous SNV 0.636 2 34 hm5C_associated_SNPs_30703 0 0 1 0 0 Cytosol 1 0.500231645068161 1 0.999536709863679 hm5C_site_30858 DeepMRMD:1;iRNA_m5C:0.999536709863679 30859 chr6 43188302 43188302 1 + C A OV 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCCAGCCCACCGGAGCCTTCATTAGTGCCATCGTCTC < 41bp 1 0.490195021063726 1 0.691015958786011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188302 nonsynonymous SNV 0.987 1 28 hm5C_associated_SNPs_30704 0 0 0 0 1 chromatin 1 0.500231643857206 0.617968082427978 0.999536712285588 hm5C_site_30859 DeepMRMD:0.617968082427978;iRNA_m5C:0.999536712285588 30860 chr5 71493395 71493395 1 + G A OV 71493379 + 71493359 71493399 41 AAAGTTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATC AAAGTTTTGTCTCCTTTACGCAGCCCGCCCCTCATTAGATC < 41bp 1 0.168448853573335 1 0.26808950304985 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493379 chr5:71493395 nonsynonymous SNV 0.653 3 37 hm5C_associated_SNPs_30705 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_30860 DeepMRMD:1;iRNA_m5C:0.999536712157815 30861 chr5 71493395 71493395 1 + G A OV 71493383 + 71493363 71493403 41 TTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATCCGAG TTTTGTCTCCTTTACGCAGCCCGCCCCTCATTAGATCCGAG < 41bp 1 0.0382555771749028 1 0.160461574792862 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493383 chr5:71493395 nonsynonymous SNV 0.653 3 33 hm5C_associated_SNPs_30706 0 0 1 0 0 Cytosol 1 0.500232154420695 1 0.999535691158609 hm5C_site_30861 DeepMRMD:1;iRNA_m5C:0.999535691158609 30862 chr2 204259457 204259457 1 + C G OV 204259473 + 204259453 204259493 41 AGTGCGTCCTCCAGTGGTACCAAATGATTACGTACCTAGCC AGTGGGTCCTCCAGTGGTACCAAATGATTACGTACCTAGCC < 41bp 1 0.524614700389116 1 0.526201963424683 experiment 0.950770599221769 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204259473 chr2:204259457 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_30708 0 0 1 0 0 Cytosol 1 0.500231643920868 0.947596073150634 0.999536712158263 hm5C_site_30862 DeepMRMD:0.947596073150634;iRNA_m5C:0.999536712158263 30863 chr1 23240153 23240153 1 + C A OV 23240154 + 23240134 23240174 41 TGCTCTATCCACTGCAGGGCCAGCCACTCGCCAGGAGGCCA TGCTCTATCCACTGCAGGGACAGCCACTCGCCAGGAGGCCA < 41bp 1 0.270835706635906 1 0.120883882045746 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23240154 chr1:23240153 synonymous SNV . 0 20 hm5C_associated_SNPs_30709 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920891 1 0.999536712158219 hm5C_site_30863 DeepMRMD:1;iRNA_m5C:0.999536712158219 30864 chr1 23240153 23240153 1 + C A OV 23240157 + 23240137 23240177 41 TCTATCCACTGCAGGGCCAGCCACTCGCCAGGAGGCCACGG TCTATCCACTGCAGGGACAGCCACTCGCCAGGAGGCCACGG < 41bp 1 0.150665966754958 1 0.120563864707947 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23240157 chr1:23240153 synonymous SNV . 0 17 hm5C_associated_SNPs_30710 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644554964 1 0.999536710890071 hm5C_site_30864 DeepMRMD:1;iRNA_m5C:0.999536710890071 30865 chr5 140573668 140573668 1 + G A OV 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATCAACGCGGACAACGGCCACCTGTTCACCCTCAGGTC < 41bp 1 0.230047615392334 1 0.0722861588001251 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573668 nonsynonymous SNV 0.059 3 31 hm5C_associated_SNPs_30711 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30865 DeepMRMD:1;iRNA_m5C:0.999536712157815 30866 chr5 54640990 54640990 1 + A G OV 54640986 + 54640966 54641006 41 TCGAGATGCAGGTGATTTGGCCAAAGGAGACCAGAAAGGGC TCGAGATGCAGGTGATTTGGCCAAGGGAGACCAGAAAGGGC < 41bp 1 0.382410541466406 1 0.783478975296021 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640986 chr5:54640990 synonymous SNV . 0 25 hm5C_associated_SNPs_30712 0 0 1 0 1 Nucleus 1 0.500231643921093 0.433042049407958 0.999536712157815 hm5C_site_30866 DeepMRMD:0.433042049407958;iRNA_m5C:0.999536712157815 30867 chr8 36692369 36692369 1 + T A OV 36692357 + 36692337 36692377 41 AATCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA AATCCTTTGTGCAGTGATTCCCATGCTGAAGAAATTTCCAA < 41bp 1 0.137233623942797 1 0.165495276451111 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36692357 chr8:36692369 nonsynonymous SNV 0.287 3 33 hm5C_associated_SNPs_30715 0 0 0 0 2 unknown 1 0.500231643921104 1 0.999536712157793 hm5C_site_30867 DeepMRMD:1;iRNA_m5C:0.999536712157793 30868 chr3 9517427 9517427 1 + T C OV 9517422 + 9517402 9517442 41 GGTATTTTAGCAGCCAGCCACATTCTGGAAACAGCACTGGC GGTATTTTAGCAGCCAGCCACATTCCGGAAACAGCACTGGC < 41bp 1 0.050802192022758 1 0.0847476422786713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9517422 chr3:9517427 synonymous SNV . 0 26 hm5C_associated_SNPs_30716 0 0 1 0 0 Nucleus 1 0.50023166358336 1 0.99953667283328 hm5C_site_30868 DeepMRMD:1;iRNA_m5C:0.99953667283328 30869 chr14 75746612 75746612 1 + C A OV 75746594 + 75746574 75746614 41 TTCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAA TTCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCAAA < 41bp 1 0.131059507636095 1 0.0769361257553101 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746594 chr14:75746612 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_30717 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920998 1 0.999536712158005 hm5C_site_30869 DeepMRMD:1;iRNA_m5C:0.999536712158005 30870 chr14 75746612 75746612 1 + C A OV 75746595 + 75746575 75746615 41 TCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAAC TCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCAAAC < 41bp 1 0.449380037380554 1 0.102610349655151 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746595 chr14:75746612 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_30718 0 0 0 0 1 Endoplasmic reticulum 1 0.500231648091915 1 0.999536703816169 hm5C_site_30870 DeepMRMD:1;iRNA_m5C:0.999536703816169 30871 chr14 75746612 75746612 1 + C A OV 75746599 + 75746579 75746619 41 GGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCA GGACTTCTGCACGGACCTGGCCGTCTCCAGTGCAAACTTCA < 41bp 1 0.0499116177045971 1 0.0486030578613281 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746599 chr14:75746612 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_30719 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921101 1 0.999536712157798 hm5C_site_30871 DeepMRMD:1;iRNA_m5C:0.999536712157798 30872 chr14 75746612 75746612 1 + C A OV 75746600 + 75746580 75746620 41 GACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCAT GACTTCTGCACGGACCTGGCCGTCTCCAGTGCAAACTTCAT < 41bp 1 0.0611694523079882 1 0.0560482144355774 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746600 chr14:75746612 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_30720 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643949784 1 0.999536712100432 hm5C_site_30872 DeepMRMD:1;iRNA_m5C:0.999536712100432 30873 chr14 75746612 75746612 1 + C A OV 75746605 + 75746585 75746625 41 CTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCA CTGCACGGACCTGGCCGTCTCCAGTGCAAACTTCATTCCCA < 41bp 1 0.394454235130821 1 0.521694481372833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746605 chr14:75746612 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_30721 0 0 0 0 1 Endoplasmic reticulum 1 0.500231652199219 0.956611037254334 0.999536695601561 hm5C_site_30873 DeepMRMD:0.956611037254334;iRNA_m5C:0.999536695601561 30874 chr14 75746612 75746612 1 + C A OV 75746606 + 75746586 75746626 41 TGCACGGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCAC TGCACGGACCTGGCCGTCTCCAGTGCAAACTTCATTCCCAC < 41bp 1 0.494801840783537 1 0.904987812042236 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746606 chr14:75746612 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_30722 0 0 0 0 1 Endoplasmic reticulum 1 0.500231650323168 0.190024375915528 0.999536699353665 hm5C_site_30874 DeepMRMD:0.190024375915528;iRNA_m5C:0.999536699353665 30875 chr14 75746612 75746612 1 + C A OV 75746611 + 75746591 75746631 41 GGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCA GGACCTGGCCGTCTCCAGTGCAAACTTCATTCCCACGGTCA < 41bp 1 0.171984076118635 1 0.0549639463424683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746611 chr14:75746612 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_30723 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30875 DeepMRMD:1;iRNA_m5C:0.999536712157815 30876 chr14 75746612 75746612 1 + C A OV 75746615 + 75746595 75746635 41 CTGGCCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGC CTGGCCGTCTCCAGTGCAAACTTCATTCCCACGGTCACTGC < 41bp 1 0.666686339896646 1 0.470567584037781 experiment 0.666627320206708 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746615 chr14:75746612 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_30724 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643914673 1 0.999536712170655 hm5C_site_30876 DeepMRMD:1;iRNA_m5C:0.999536712170655 30877 chr14 75746612 75746612 1 + C A OV 75746618 + 75746598 75746638 41 GCCGTCTCCAGTGCCAACTTCATTCCCACGGTCACTGCCAT GCCGTCTCCAGTGCAAACTTCATTCCCACGGTCACTGCCAT < 41bp 1 0.0326212388589641 1 0.277205944061279 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746618 chr14:75746612 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_30725 0 0 0 0 1 Endoplasmic reticulum 1 0.500231645200729 1 0.999536709598541 hm5C_site_30877 DeepMRMD:1;iRNA_m5C:0.999536709598541 30878 chr12 6979505 6979505 1 + C G OV 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCCTTGTGGGTGGTGCTTCGCTCAAGCCCGAATTCGTGG < 41bp 1 0.353922349908518 1 0.0702081322669983 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979505 synonymous SNV . 0 22 hm5C_associated_SNPs_30726 0 0 1 0 1 Ribosome 1 0.500231631665106 1 0.999536736669789 hm5C_site_30878 DeepMRMD:1;iRNA_m5C:0.999536736669789 30879 chr12 6979505 6979505 1 + C G OV 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGTGGTGCTTCGCTCAAGCCCGAATTCGTGGACAT < 41bp 1 0.590385239206458 1 0.493698328733444 experiment 0.819229521587084 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979505 synonymous SNV . 0 18 hm5C_associated_SNPs_30727 0 0 1 0 1 Ribosome 1 0.5002316439212 1 0.9995367121576 hm5C_site_30879 DeepMRMD:1;iRNA_m5C:0.9995367121576 30880 chr1 29435931 29435931 1 + C T OV 29435945 + 29435925 29435965 41 CACCACCACAACTCAAATTACCAAGGTAACAGACCAGCTAG CACCACTACAACTCAAATTACCAAGGTAACAGACCAGCTAG < 41bp 1 0.334745264538467 1 0.354248642921448 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EPB41 ENSG00000159023 CDS Human protein_coding chr1:29435945 chr1:29435931 synonymous SNV . 0 7 hm5C_associated_SNPs_30728 0 0 1 0 2 Cytosol 1 0.500231643921213 1 0.999536712157574 hm5C_site_30880 DeepMRMD:1;iRNA_m5C:0.999536712157574 30881 chr1 29435931 29435931 1 + C T OV 29435946 + 29435926 29435966 41 ACCACCACAACTCAAATTACCAAGGTAACAGACCAGCTAGA ACCACTACAACTCAAATTACCAAGGTAACAGACCAGCTAGA < 41bp 1 0.559952537764351 1 0.71496057510376 experiment 0.880094924471298 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EPB41 ENSG00000159023 CDS Human protein_coding chr1:29435946 chr1:29435931 synonymous SNV . 0 6 hm5C_associated_SNPs_30729 0 0 1 0 2 Cytosol 1 0.500231643927426 0.57007884979248 0.999536712145147 hm5C_site_30881 DeepMRMD:0.57007884979248;iRNA_m5C:0.999536712145147 30882 chr22 41922335 41922335 1 + G A OV 41922331 + 41922311 41922351 41 TGGCTCAAGTTCCGTGGGCACTTGGATAACATCTCCAACAA TGGCTCAAGTTCCGTGGGCACTTGAATAACATCTCCAACAA < 41bp 1 0.697292815064042 1 0.655420243740082 experiment 0.605414369871917 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41922331 chr22:41922335 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_30730 0 0 1 0 1 chromatin 1 0.500231643971597 0.689159512519836 0.999536712056805 hm5C_site_30882 DeepMRMD:0.689159512519836;iRNA_m5C:0.999536712056805 30883 chr11 114273569 114273569 1 + A G OV 114273562 + 114273542 114273582 41 CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGT CATTTTAGGAAGTAGTCATGCCCCACAGGATGTCAGTTTGT < 41bp 1 0.517580575030032 1 0.064616322517395 experiment 0.964838849939936 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273562 chr11:114273569 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_30731 0 0 1 0 3 Cytosol 1 0.500231643907565 1 0.999536712184869 hm5C_site_30883 DeepMRMD:1;iRNA_m5C:0.999536712184869 30884 chr11 114273569 114273569 1 + A G OV 114273563 + 114273543 114273583 41 ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGTC ATTTTAGGAAGTAGTCATGCCCCACAGGATGTCAGTTTGTC < 41bp 1 0.152360007219641 1 0.186032772064209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273563 chr11:114273569 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_30732 0 0 1 0 3 Cytosol 1 0.500231644024481 1 0.999536711951037 hm5C_site_30884 DeepMRMD:1;iRNA_m5C:0.999536711951037 30885 chr11 114273569 114273569 1 + A G OV 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAGGATGTCAGTTTGTCATATCCCCAACATCATGTTG < 41bp 1 0.291967356032003 1 0.0837568342685699 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273569 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_30733 0 0 1 0 3 Cytosol 1 0.500231643962531 1 0.999536712074937 hm5C_site_30885 DeepMRMD:1;iRNA_m5C:0.999536712074937 30886 chr11 114273569 114273569 1 + A G OV 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT GGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT < 41bp 1 0.658442150924656 1 0.0648296177387238 experiment 0.683115698150687 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273569 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_30734 0 0 1 0 3 Cytosol 1 0.500231785072259 1 0.999536429855483 hm5C_site_30886 DeepMRMD:1;iRNA_m5C:0.999536429855483 30887 chr12 56532006 56532006 1 + T A OV 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATCTGGCCGCCTGCACATGCGCCTGGAGCG < 41bp 1 0.0548136643565562 1 0.496185600757599 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56532006 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_30735 0 0 1 0 2 Endoplasmic reticulum 1 0.500232112092829 1 0.999535775814342 hm5C_site_30887 DeepMRMD:1;iRNA_m5C:0.999535775814342 30888 chr12 56532006 56532006 1 + T A OV 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATCTGGCCGCCTGCACATGCGCCTGGAGCGT < 41bp 1 0.503814301090347 1 0.611242890357971 experiment 0.992371397819305 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56532006 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_30736 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164391922 0.777514219284058 0.999536712161559 hm5C_site_30888 DeepMRMD:0.777514219284058;iRNA_m5C:0.999536712161559 30889 chr19 39964938 39964938 1 + C T OV 39964940 + 39964920 39964960 41 GGTTCCTACCAGCCCAGCCCCAGCCCCCAGAGCTACCACCA GGTTCCTACCAGCCCAGCTCCAGCCCCCAGAGCTACCACCA < 41bp 1 0.366995698708515 1 0.672664642333984 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39964940 chr19:39964938 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_30737 0 0 1 0 1 Nucleus 1 0.500231643921092 0.654670715332032 0.999536712157815 hm5C_site_30889 DeepMRMD:0.654670715332032;iRNA_m5C:0.999536712157815 30890 chr19 39964932 39964932 1 + C G OV 39964940 + 39964920 39964960 41 GGTTCCTACCAGCCCAGCCCCAGCCCCCAGAGCTACCACCA GGTTCCTACCAGGCCAGCCCCAGCCCCCAGAGCTACCACCA < 41bp 1 0.425574765452411 1 0.720483779907227 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39964940 chr19:39964932 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_30738 0 0 1 0 1 Nucleus 1 0.500231643921092 0.559032440185546 0.999536712157815 hm5C_site_30890 DeepMRMD:0.559032440185546;iRNA_m5C:0.999536712157815 30891 chr12 62931434 62931434 1 + G A OV 62931443 + 62931423 62931463 41 CTTGGCGCATTGCCATGGGGCTGTTCTTGGAACATCATGGC CTTGGCGCATTACCATGGGGCTGTTCTTGGAACATCATGGC < 41bp 1 0.115521535115751 1 0.0545776784420013 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62931443 chr12:62931434 nonsynonymous SNV 0.978 4 12 hm5C_associated_SNPs_30739 0 0 1 0 2 Nucleus 1 0.500231643918909 1 0.999536712162182 hm5C_site_30891 DeepMRMD:1;iRNA_m5C:0.999536712162182 30892 chr7 102944373 102944373 1 + A T OV 102944354 + 102944334 102944374 41 AAGCAGAGATTGAACGTGAGCGTGGAGTAATCCTTAGAGAG AAGCAGAGATTGAACGTGAGCGTGGAGTAATCCTTAGAGTG < 41bp 1 0.601929328025135 1 0.501772940158844 experiment 0.79614134394973 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PMPCB ENSG00000105819 CDS Human protein_coding chr7:102944354 chr7:102944373 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_30740 0 0 1 0 1 Ribosome 1 0.500231643921622 0.996454119682312 0.999536712156756 hm5C_site_30892 DeepMRMD:0.996454119682312;iRNA_m5C:0.999536712156756 30893 chr3 31674583 31674583 1 + G C OV 31674578 + 31674558 31674598 41 AGCACCTGATAACAGGGAGACATTAGATCACAAACCTCGAG AGCACCTGATAACAGGGAGACATTACATCACAAACCTCGAG < 41bp 1 0.14284062864636 1 0.223733454942703 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STT3B ENSG00000163527 CDS Human protein_coding chr3:31674578 chr3:31674583 nonsynonymous SNV 0.997 2 26 hm5C_associated_SNPs_30741 0 0 1 0 1 Nucleus 1 0.500231643921221 1 0.999536712157558 hm5C_site_30893 DeepMRMD:1;iRNA_m5C:0.999536712157558 30894 chr5 142434073 142434073 1 + C T OV 142434062 + 142434042 142434082 41 GCTGAATGGGAGATAAAGACCATCACTAGTGCTCTGAAGAC GCTGAATGGGAGATAAAGACCATCACTAGTGTTCTGAAGAC < 41bp 1 0.343027809712071 1 0.0974161028862 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142434062 chr5:142434073 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_30742 0 0 1 0 2 Nucleus 1 0.500232382005155 1 0.99953523598969 hm5C_site_30894 DeepMRMD:1;iRNA_m5C:0.99953523598969 30895 chr19 47876045 47876045 1 + A T OV 47876028 + 47876008 47876048 41 CCATGTTCAGCCTGGTGGAGCCTGTGCTCACCATCGCAGCC CCATGTTCAGCCTGGTGGAGCCTGTGCTCACCATCGCTGCC < 41bp 1 0.0790722887954718 1 0.0816695988178253 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX34 ENSG00000134815 CDS Human protein_coding chr19:47876028 chr19:47876045 synonymous SNV . 0 38 hm5C_associated_SNPs_30743 0 0 1 0 1 Ribosome 1 0.500231644067431 1 0.999536711865139 hm5C_site_30895 DeepMRMD:1;iRNA_m5C:0.999536711865139 30896 chrX 103434385 103434385 1 + T C OV 103434382 + 103434362 103434402 41 GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAGGTG GGAAGGAGAGGCTCAGTGGGCTCCTCCTTAACGAAGAGGTG < 41bp 1 0.47618171450939 1 0.126292496919632 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103434382 chrX:103434385 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_30744 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30896 DeepMRMD:1;iRNA_m5C:0.999536712157815 30897 chr5 139887569 139887569 1 + G C OV 139887579 + 139887559 139887599 41 AGCCAATGTTGAACATAGGGCAAAGGTAAGCATTTTTTACT AGCCAATGTTCAACATAGGGCAAAGGTAAGCATTTTTTACT < 41bp 1 0.145675766339028 1 0.16583040356636 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139887579 chr5:139887569 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_30745 0 0 1 0 1 unknown 1 0.500231643921114 1 0.999536712157772 hm5C_site_30897 DeepMRMD:1;iRNA_m5C:0.999536712157772 30898 chr15 57545612 57545612 1 + C A OV 57545632 + 57545612 57545652 41 CAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC AAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC < 41bp 1 0.225204763562431 1 0.404215723276138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57545632 chr15:57545612 synonymous SNV . 0 1 hm5C_associated_SNPs_30747 0 0 1 0 1 Cytosol 1 0.500231637495666 1 0.999536725008668 hm5C_site_30898 DeepMRMD:1;iRNA_m5C:0.999536725008668 30899 chr2 133402828 133402828 1 + G A OV 133402834 + 133402814 133402854 41 TTCTACCTCAGCTCGGTCATCAACCCGCTCCTGTACACGGT TTCTACCTCAGCTCAGTCATCAACCCGCTCCTGTACACGGT < 41bp 1 0.163462068885389 1 0.277817130088806 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR39 ENSG00000183840 CDS Human protein_coding chr2:133402834 chr2:133402828 synonymous SNV . 0 15 hm5C_associated_SNPs_30748 0 0 0 0 0 nucleus 1 0.500231643918719 1 0.999536712162561 hm5C_site_30899 DeepMRMD:1;iRNA_m5C:0.999536712162561 30900 chr3 184039178 184039178 1 + C T OV 184039162 + 184039142 184039182 41 CCCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCA CCCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATTCCCA < 41bp 1 0.230562115165541 1 0.424950808286667 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039162 chr3:184039178 nonsynonymous SNV 0.997 1 37 hm5C_associated_SNPs_30749 0 0 1 0 0 Nucleus 1 0.500231643920023 1 0.999536712159954 hm5C_site_30900 DeepMRMD:1;iRNA_m5C:0.999536712159954 30901 chr3 184039178 184039178 1 + C T OV 184039163 + 184039143 184039183 41 CCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCAG CCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATTCCCAG < 41bp 1 0.354570367206136 1 0.822280287742615 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039163 chr3:184039178 nonsynonymous SNV 0.997 1 36 hm5C_associated_SNPs_30750 0 0 1 0 0 Nucleus 1 0.500231643037557 0.35543942451477 0.999536713924887 hm5C_site_30901 DeepMRMD:0.35543942451477;iRNA_m5C:0.999536713924887 30902 chr1 53420448 53420448 1 + A T OV 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGATGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.38992333486534 1 0.162339180707932 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420448 nonsynonymous SNV 0.998 5 4 hm5C_associated_SNPs_30751 0 0 1 0 2 Ribosome 1 0.500231641612294 1 0.999536716775412 hm5C_site_30902 DeepMRMD:1;iRNA_m5C:0.999536716775412 30903 chr5 137518372 137518372 1 + G A OV 137518361 + 137518341 137518381 41 AACTTCATCCAACACCTGATCTGAAGCCCTTGCTCTCCAAT AACTTCATCCAACACCTGATCTGAAGCCCTTACTCTCCAAT < 41bp 1 0.688205528246012 1 0.243791610002518 experiment 0.623588943507976 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF20A ENSG00000112984 CDS Human protein_coding chr5:137518361 chr5:137518372 synonymous SNV . 0 32 hm5C_associated_SNPs_30752 0 0 1 0 2 Nucleus 1 0.500231642609237 1 0.999536714781527 hm5C_site_30903 DeepMRMD:1;iRNA_m5C:0.999536714781527 30904 chr21 37617618 37617618 1 + G A OV 37617607 + 37617587 37617627 41 CCCGGACAGCAGCGAGCACACCGAGTCTGCAGATACAAGCT CCCGGACAGCAGCGAGCACACCGAGTCTGCAAATACAAGCT < 41bp 1 0.476270027814285 1 0.27094829082489 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOPEY2 ENSG00000142197 CDS Human protein_coding chr21:37617607 chr21:37617618 nonsynonymous SNV 0.265 4 32 hm5C_associated_SNPs_30753 0 0 0 0 0 cytosol 1 0.500231643940036 1 0.999536712119929 hm5C_site_30904 DeepMRMD:1;iRNA_m5C:0.999536712119929 30905 chr20 49195803 49195803 1 + G A OV 49195806 + 49195786 49195826 41 CAGACAGCCGACCAGCTGCGCTTCTCCTACCTGGCTGTGAT CAGACAGCCGACCAGCTACGCTTCTCCTACCTGGCTGTGAT < 41bp 1 0.136933580537789 1 0.0317008197307587 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49195806 chr20:49195803 synonymous SNV . 0 18 hm5C_associated_SNPs_30754 0 0 1 0 2 Ribosome 1 0.500231643960737 1 0.999536712078526 hm5C_site_30905 DeepMRMD:1;iRNA_m5C:0.999536712078526 30906 chr6 31928242 31928242 1 + A G OV 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTCGGCTACAGCCTCCTTG < 41bp 1 0.367247886687597 1 0.0320837199687958 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928242 nonsynonymous SNV 0.864 2 33 hm5C_associated_SNPs_30755 0 0 1 0 2 chromatin 1 0.50023164392683 1 0.999536712146339 hm5C_site_30906 DeepMRMD:1;iRNA_m5C:0.999536712146339 30907 chr1 150483652 150483652 1 + G T OV 150483635 + 150483615 150483655 41 TATTCCCGCTGCTGCCACTGCCGCAGCCACACAAACCGCCT TATTCCCGCTGCTGCCACTGCCGCAGCCACACAAACCTCCT < 41bp 1 0.604396572075465 1 0.749216675758362 experiment 0.791206855849069 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ECM1 ENSG00000143369 CDS Human protein_coding chr1:150483635 chr1:150483652 nonsynonymous SNV 0.856 2 38 hm5C_associated_SNPs_30756 0 0 0 0 1 Endoplasmic reticulum 1 0.500231606813118 0.501566648483276 0.999536786373765 hm5C_site_30907 DeepMRMD:0.501566648483276;iRNA_m5C:0.999536786373765 30908 chr18 19423144 19423144 1 + T C OV 19423125 + 19423105 19423145 41 TGGATATCCAGAATGTGAACCAACAAACTGCCCTACACCTT TGGATATCCAGAATGTGAACCAACAAACTGCCCTACACCCT < 41bp 1 0.437371506843277 1 0.29427108168602 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MIB1 ENSG00000101752 CDS Human protein_coding chr18:19423125 chr18:19423144 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_30757 0 0 1 0 0 Nucleus 1 0.500231644387427 1 0.999536711225147 hm5C_site_30908 DeepMRMD:1;iRNA_m5C:0.999536711225147 30909 chr1 3328714 3328714 1 + C T OV 3328724 + 3328704 3328744 41 AGTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGC AGTTTGGGGGTGGCTTGGCGCCCCCGGGGGCCCCGAACAGC < 41bp 1 0.223700695482014 1 0.204122930765152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328724 chr1:3328714 synonymous SNV . 0 11 hm5C_associated_SNPs_30758 0 0 0 0 0 Nucleus 1 0.500231643920926 1 0.999536712158148 hm5C_site_30909 DeepMRMD:1;iRNA_m5C:0.999536712158148 30910 chr1 3328714 3328714 1 + C T OV 3328725 + 3328705 3328745 41 GTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCG GTTTGGGGGTGGCTTGGCGCCCCCGGGGGCCCCGAACAGCG < 41bp 1 0.473347415799669 1 0.473488748073578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328725 chr1:3328714 synonymous SNV . 0 10 hm5C_associated_SNPs_30759 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_30910 DeepMRMD:1;iRNA_m5C:0.999536712157816 30911 chr1 3328714 3328714 1 + C T OV 3328726 + 3328706 3328746 41 TTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGT TTTGGGGGTGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGT < 41bp 1 0.518812540064362 1 0.536466419696808 experiment 0.962374919871275 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328726 chr1:3328714 synonymous SNV . 0 9 hm5C_associated_SNPs_30760 0 0 0 0 0 Nucleus 1 0.500231645192682 0.927067160606384 0.999536709614636 hm5C_site_30911 DeepMRMD:0.927067160606384;iRNA_m5C:0.999536709614636 30912 chr1 3328714 3328714 1 + C T OV 3328727 + 3328707 3328747 41 TTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGTG TTGGGGGTGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGTG < 41bp 1 0.604891362088725 1 0.784398317337036 experiment 0.790217275822551 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328727 chr1:3328714 synonymous SNV . 0 8 hm5C_associated_SNPs_30761 0 0 0 0 0 Nucleus 1 0.500231643921091 0.431203365325928 0.999536712157817 hm5C_site_30912 DeepMRMD:0.431203365325928;iRNA_m5C:0.999536712157817 30913 chr7 6634132 6634132 1 + C T OV 6634139 + 6634119 6634159 41 CTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA CTGCTGTTTGGTGTCGGGATCCATTCAGACGCTGAAGCAGA < 41bp 1 0.0415904786052418 1 0.18979811668396 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634139 chr7:6634132 nonsynonymous SNV 0.997 3 14 hm5C_associated_SNPs_30762 0 0 1 0 2 chromatin 1 0.50019683151029 1 0.999606336979419 hm5C_site_30913 DeepMRMD:1;iRNA_m5C:0.999606336979419 30914 chr7 144060320 144060320 1 + C T OV 144060317 + 144060297 144060337 41 CAGACCAGATATTATTCTCCCTGCGAAGAGCATCCTGCAGA CAGACCAGATATTATTCTCCCTGTGAAGAGCATCCTGCAGA < 41bp 1 0.213886244456786 1 0.14110854268074 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144060317 chr7:144060320 synonymous SNV . 0 24 hm5C_associated_SNPs_30763 0 0 0 0 0 exosome 1 0.500231643968758 1 0.999536712062483 hm5C_site_30914 DeepMRMD:1;iRNA_m5C:0.999536712062483 30915 chr3 119133697 119133697 1 + G A OV 119133695 + 119133675 119133715 41 CTCGAGGTTCCCTCCTCCAGCAGCTGTGCTAATCTTGAAAC CTCGAGGTTCCCTCCTCCAGCAACTGTGCTAATCTTGAAAC < 41bp 1 0.201729604706964 1 0.195377975702286 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119133695 chr3:119133697 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_30764 0 0 0 0 0 cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_30915 DeepMRMD:1;iRNA_m5C:0.999536712157818 30916 chrX 73045820 73045820 1 + C G OV 73045800 - 73045780 73045820 41 GGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT CGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCT < 41bp 1 0.531572069592086 1 0.470811605453491 experiment 0.936855860815828 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045800 chrX:73045820 . . 0 1 hm5C_associated_SNPs_30765 0 0 1 3 0 unknown 1 0.500231643921107 1 0.999536712157786 hm5C_site_30916 DeepMRMD:1;iRNA_m5C:0.999536712157786 30917 chrX 73045820 73045820 1 + C G OV 73045803 - 73045783 73045823 41 GGTGGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC GGTCGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATC < 41bp 1 0.3048410776755 1 0.191034018993378 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045803 chrX:73045820 . . 0 4 hm5C_associated_SNPs_30766 0 0 1 3 0 unknown 1 0.500231643916485 1 0.999536712167031 hm5C_site_30917 DeepMRMD:1;iRNA_m5C:0.999536712167031 30918 chrX 73045820 73045820 1 + C G OV 73045808 - 73045788 73045828 41 AATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAATAC AATTTGGTCGACTGTGCCAACGCTACTCCTGGGTTTAATAC < 41bp 1 0.346614366059228 1 0.0612618029117584 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045808 chrX:73045820 . . 0 9 hm5C_associated_SNPs_30767 0 0 1 3 0 unknown 1 0.500231643921094 1 0.999536712157813 hm5C_site_30918 DeepMRMD:1;iRNA_m5C:0.999536712157813 30919 chrX 73045820 73045820 1 + C G OV 73045811 - 73045791 73045831 41 AATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAA AATAATTTGGTCGACTGTGCCAACGCTACTCCTGGGTTTAA < 41bp 1 0.32559254562472 1 0.398777276277542 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045811 chrX:73045820 . . 0 12 hm5C_associated_SNPs_30768 0 0 1 3 0 unknown 1 0.500231707207873 1 0.999536585584254 hm5C_site_30919 DeepMRMD:1;iRNA_m5C:0.999536585584254 30920 chrX 73045820 73045820 1 + C G OV 73045812 - 73045792 73045832 41 AAATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTA AAATAATTTGGTCGACTGTGCCAACGCTACTCCTGGGTTTA < 41bp 1 0.0341231754248214 1 0.188932627439499 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045812 chrX:73045820 . . 0 13 hm5C_associated_SNPs_30769 0 0 1 3 0 unknown 1 0.500231408505766 1 0.999537182988468 hm5C_site_30920 DeepMRMD:1;iRNA_m5C:0.999537182988468 30921 chr7 133682256 133682256 1 + G A OV 133682272 + 133682252 133682292 41 TCCTGCTCAAGACAGCCACACGAACACGGATCTCCCCCCAG TCCTACTCAAGACAGCCACACGAACACGGATCTCCCCCCAG < 41bp 1 0.206507810678988 1 0.117963463068008 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133682272 chr7:133682256 nonsynonymous SNV 0.941 1 5 hm5C_associated_SNPs_30770 0 0 1 0 1 Nucleus 1 0.500231643924572 1 0.999536712150856 hm5C_site_30921 DeepMRMD:1;iRNA_m5C:0.999536712150856 30922 chr6 110501769 110501769 1 + C A OV 110501749 + 110501729 110501769 41 CGGTGTCCGCTGCCAGCCGCCGACTCCCTCATGCACTTGAC CGGTGTCCGCTGCCAGCCGCCGACTCCCTCATGCACTTGAA < 41bp 1 0.467141657955436 1 0.557451546192169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC40 ENSG00000168438 CDS Human protein_coding chr6:110501749 chr6:110501769 nonsynonymous SNV 0.967 1 41 hm5C_associated_SNPs_30772 0 0 1 0 1 chromatin 1 0.500231643921092 0.885096907615662 0.999536712157815 hm5C_site_30922 DeepMRMD:0.885096907615662;iRNA_m5C:0.999536712157815 30923 chr4 1729572 1729572 1 + C T OV 1729555 + 1729535 1729575 41 TTTGGGAGTGGCAGCTCCAGCGAGTCTGGCCCAGGTGCCCT TTTGGGAGTGGCAGCTCCAGCGAGTCTGGCCCAGGTGTCCT < 41bp 1 0.665319562661481 1 0.58119809627533 experiment 0.669360874677039 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1729555 chr4:1729572 nonsynonymous SNV 0.000 0 38 hm5C_associated_SNPs_30773 0 0 1 0 0 Cytosol 1 0.500231643992397 0.83760380744934 0.999536712015206 hm5C_site_30923 DeepMRMD:0.83760380744934;iRNA_m5C:0.999536712015206 30924 chr14 21963388 21963388 1 + G A OV 21963397 + 21963377 21963417 41 TCTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAA TCTTCTCACAGATTGAGTCTCCTTCTCAGATGGATGTTGAA < 41bp 1 0.0160626575003287 1 0.0700528621673584 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963397 chr14:21963388 nonsynonymous SNV 0.936 0 12 hm5C_associated_SNPs_30774 0 0 1 0 1 Ribosome 1 0.500231860152545 1 0.999536279694911 hm5C_site_30924 DeepMRMD:1;iRNA_m5C:0.999536279694911 30925 chr14 21963388 21963388 1 + G A OV 21963398 + 21963378 21963418 41 CTTCTCACAGGTTGAGTCTCCTTCTCAGATGGATGTTGAAT CTTCTCACAGATTGAGTCTCCTTCTCAGATGGATGTTGAAT < 41bp 1 0.0797059110161117 1 0.0459150969982147 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOX4 ENSG00000092203 CDS Human protein_coding chr14:21963398 chr14:21963388 nonsynonymous SNV 0.936 0 11 hm5C_associated_SNPs_30775 0 0 1 0 1 Ribosome 1 0.500231643921642 1 0.999536712156716 hm5C_site_30925 DeepMRMD:1;iRNA_m5C:0.999536712156716 30926 chr17 30774043 30774043 1 + G A OV 30774035 + 30774015 30774055 41 GAGCATCCTGGAACTGGGATCTCTCCTGGCAAAGACTGGAC GAGCATCCTGGAACTGGGATCTCTCCTGACAAAGACTGGAC < 41bp 1 0.221703645446455 1 0.357843279838562 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30774035 chr17:30774043 nonsynonymous SNV 0.994 1 29 hm5C_associated_SNPs_30776 0 0 1 0 2 Ribosome 1 0.500231643387348 1 0.999536713225303 hm5C_site_30926 DeepMRMD:1;iRNA_m5C:0.999536713225303 30927 chr20 2732414 2732414 1 + G A OV 2732405 + 2732385 2732425 41 TACAGAAAGTCATTCCCAGACACCCCGGAGACCCCGAGAGG TACAGAAAGTCATTCCCAGACACCCCGGAAACCCCGAGAGG < 41bp 1 0.221689079971655 1 0.0965028405189514 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EBF4 ENSG00000088881 CDS Human protein_coding chr20:2732405 chr20:2732414 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_30777 0 0 0 0 2 exosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_30927 DeepMRMD:1;iRNA_m5C:0.999536712157813 30928 chr3 52245377 52245377 1 + G T OV 52245357 + 52245337 52245377 41 ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGG ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGT < 41bp 1 0.139175985959895 1 0.292942702770233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245357 chr3:52245377 nonsynonymous SNV 0.896 5 41 hm5C_associated_SNPs_30778 0 0 1 0 1 Cytosol 1 0.500236291492165 1 0.99952741701567 hm5C_site_30928 DeepMRMD:1;iRNA_m5C:0.99952741701567 30929 chr3 52245377 52245377 1 + G T OV 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGTCTTC < 41bp 1 0.282711791993017 1 0.267013669013977 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245377 nonsynonymous SNV 0.896 5 37 hm5C_associated_SNPs_30779 0 0 1 0 1 Cytosol 1 0.50023124632571 1 0.999537507348581 hm5C_site_30929 DeepMRMD:1;iRNA_m5C:0.999537507348581 30930 chr2 71901350 71901350 1 + G A OV 71901331 + 71901311 71901351 41 TCCTCTTCCGGGTCAGGATGCCTTCTGGAGGCTGGACAAGA TCCTCTTCCGGGTCAGGATGCCTTCTGGAGGCTGGACAAAA < 41bp 1 0.0233603353340228 1 0.054459422826767 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71901331 chr2:71901350 synonymous SNV . 0 40 hm5C_associated_SNPs_30780 0 0 0 0 2 Nucleus 1 0.500231645792347 1 0.999536708415305 hm5C_site_30930 DeepMRMD:1;iRNA_m5C:0.999536708415305 30931 chrX 100880766 100880766 1 + T A OV 100880746 + 100880726 100880766 41 TCAGCGGGAAATGAAGAAACCAAACTTCAGGTTCTGAAACT TCAGCGGGAAATGAAGAAACCAAACTTCAGGTTCTGAAACA < 41bp 1 0.326547659918775 1 0.262279748916626 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880746 chrX:100880766 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_30781 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30931 DeepMRMD:1;iRNA_m5C:0.999536712157815 30932 chrX 100880766 100880766 1 + T A OV 100880750 + 100880730 100880770 41 CGGGAAATGAAGAAACCAAACTTCAGGTTCTGAAACTCCTT CGGGAAATGAAGAAACCAAACTTCAGGTTCTGAAACACCTT < 41bp 1 0.57915544549717 1 0.440261274576187 experiment 0.841689109005661 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880750 chrX:100880766 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_30782 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30932 DeepMRMD:1;iRNA_m5C:0.999536712157815 30933 chrX 100880766 100880766 1 + T A OV 100880753 + 100880733 100880773 41 GAAATGAAGAAACCAAACTTCAGGTTCTGAAACTCCTTTTG GAAATGAAGAAACCAAACTTCAGGTTCTGAAACACCTTTTG < 41bp 1 0.65733171496105 1 0.722513556480408 experiment 0.685336570077899 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880753 chrX:100880766 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_30783 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643909745 0.554972887039184 0.99953671218051 hm5C_site_30933 DeepMRMD:0.554972887039184;iRNA_m5C:0.99953671218051 30934 chrX 100880766 100880766 1 + T A OV 100880765 + 100880745 100880785 41 CCAAACTTCAGGTTCTGAAACTCCTTTTGAATTTGGCTGAA CCAAACTTCAGGTTCTGAAACACCTTTTGAATTTGGCTGAA < 41bp 1 0.581087384994337 1 0.149421811103821 experiment 0.837825230011326 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880765 chrX:100880766 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_30784 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164391783 1 0.999536712164341 hm5C_site_30934 DeepMRMD:1;iRNA_m5C:0.999536712164341 30935 chrX 100880766 100880766 1 + T A OV 100880767 + 100880747 100880787 41 AAACTTCAGGTTCTGAAACTCCTTTTGAATTTGGCTGAAAA AAACTTCAGGTTCTGAAACACCTTTTGAATTTGGCTGAAAA < 41bp 1 0.0308120422396834 1 0.069230705499649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880767 chrX:100880766 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_30785 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644316448 1 0.999536711367104 hm5C_site_30935 DeepMRMD:1;iRNA_m5C:0.999536711367104 30936 chrX 100880766 100880766 1 + T A OV 100880781 + 100880761 100880801 41 GAAACTCCTTTTGAATTTGGCTGAAAATCCAGCCATGACTA GAAACACCTTTTGAATTTGGCTGAAAATCCAGCCATGACTA < 41bp 1 0.699024555951144 1 0.507201910018921 experiment 0.601950888097712 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880781 chrX:100880766 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_30786 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.985596179962158 0.999536712157815 hm5C_site_30936 DeepMRMD:0.985596179962158;iRNA_m5C:0.999536712157815 30937 chr6 33411300 33411300 1 + G A OV 33411295 + 33411275 33411315 41 TAGCAAGAGTGAGGACCTCTCTTCCGGGGTCCCCAAGCCCC TAGCAAGAGTGAGGACCTCTCTTCCAGGGTCCCCAAGCCCC < 41bp 1 0.147152915528202 1 0.232027679681778 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33411295 chr6:33411300 nonsynonymous SNV 0.831 1 26 hm5C_associated_SNPs_30788 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30937 DeepMRMD:1;iRNA_m5C:0.999536712157815 30938 chr20 44512473 44512473 1 + G A OV 44512456 + 44512436 44512476 41 GTGCCCGCCGCCAGGTGCTCCAGCCCGACATGCTGCCGGCT GTGCCCGCCGCCAGGTGCTCCAGCCCGACATGCTGCCAGCT < 41bp 1 0.333687101617376 1 0.742921948432922 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSWIM1 ENSG00000168612 CDS Human protein_coding chr20:44512456 chr20:44512473 synonymous SNV . 0 38 hm5C_associated_SNPs_30789 0 0 0 0 0 nucleus 1 0.500231643840628 0.514156103134156 0.999536712318743 hm5C_site_30938 DeepMRMD:0.514156103134156;iRNA_m5C:0.999536712318743 30939 chr15 93528746 93528746 1 + G A OV 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCAGACAAATGACAGTAACTCTGACACTGAGTC < 41bp 1 0.343599340785386 1 0.0797841250896454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528746 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_30790 0 0 1 0 1 Nucleus 1 0.50023490152321 1 0.999530196953581 hm5C_site_30939 DeepMRMD:1;iRNA_m5C:0.999530196953581 30940 chr7 43590137 43590137 1 + G A OV 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGATG < 41bp 1 0.267161167830782 1 0.09238600730896 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590137 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_30791 0 0 0 0 2 Cytosol 1 0.50022941767309 1 0.99954116465382 hm5C_site_30940 DeepMRMD:1;iRNA_m5C:0.99954116465382 30941 chr11 25004828 25004828 1 + G A OV 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCCAGATGCAGCGACCAAAAGCAAGGTACCTA < 41bp 1 0.20599847775818 1 0.247186273336411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004828 nonsynonymous SNV 0.010 0 23 hm5C_associated_SNPs_30792 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30941 DeepMRMD:1;iRNA_m5C:0.999536712157815 30942 chr12 57604651 57604651 1 + G A OV 57604652 + 57604632 57604672 41 CCCGGCTTCCTGGGCGACCGCTGCCAGTACCGTGAGTGAGC CCCGGCTTCCTGGGCGACCACTGCCAGTACCGTGAGTGAGC < 41bp 1 0.196694879715126 1 0.13219365477562 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604652 chr12:57604651 nonsynonymous SNV 0.994 1 20 hm5C_associated_SNPs_30793 0 0 1 0 1 Exosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_30942 DeepMRMD:1;iRNA_m5C:0.99953671215781 30943 chr12 57604643 57604643 1 + G A OV 57604652 + 57604632 57604672 41 CCCGGCTTCCTGGGCGACCGCTGCCAGTACCGTGAGTGAGC CCCGGCTTCCTAGGCGACCGCTGCCAGTACCGTGAGTGAGC < 41bp 1 0.140709425598204 1 0.226545482873917 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57604652 chr12:57604643 synonymous SNV . 0 12 hm5C_associated_SNPs_30794 0 0 1 0 1 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30943 DeepMRMD:1;iRNA_m5C:0.999536712157815 30944 chr15 22969246 22969246 1 + G A OV 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATATTCCG < 41bp 1 0.469406343667259 1 0.122115910053253 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969246 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_30795 0 0 1 0 1 Cytosol 1 0.500231643921646 1 0.999536712156708 hm5C_site_30944 DeepMRMD:1;iRNA_m5C:0.999536712156708 30945 chrX 135593897 135593897 1 + G C OV 135593880 + 135593860 135593900 41 TGAAAAGGGGCTTGAAGCTGCTGATAAAAAGGCGGAAGAAG TGAAAAGGGGCTTGAAGCTGCTGATAAAAAGGCGGAACAAG < 41bp 1 0.302679068637831 1 0.115403264760971 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593880 chrX:135593897 nonsynonymous SNV 0.806 1 38 hm5C_associated_SNPs_30797 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30945 DeepMRMD:1;iRNA_m5C:0.999536712157815 30946 chr19 7682693 7682693 1 + G T OV 7682691 + 7682671 7682711 41 ATCCTCTTTCGCGACTCGAGCTGCCAGTTCCGGGCGCTCTA ATCCTCTTTCGCGACTCGAGCTTCCAGTTCCGGGCGCTCTA < 41bp 1 0.0750305769679721 1 0.0356321632862091 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682691 chr19:7682693 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_30798 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30946 DeepMRMD:1;iRNA_m5C:0.999536712157815 30947 chr1 114483621 114483621 1 + A G OV 114483612 + 114483592 114483632 41 TAGGCCGGGGGACATTTGGACAGGTGGCTAAGTGCTGGAAG TAGGCCGGGGGACATTTGGACAGGTGGCTGAGTGCTGGAAG < 41bp 1 0.655040720289137 1 0.751654505729675 experiment 0.689918559421727 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114483612 chr1:114483621 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_30799 0 0 1 0 0 Cytosol 1 0.500231643921092 0.49669098854065 0.999536712157815 hm5C_site_30947 DeepMRMD:0.49669098854065;iRNA_m5C:0.999536712157815 30948 chr13 97928622 97928622 1 + G A OV 97928608 + 97928588 97928628 41 ATGCAAATTTGCTCATCCCCCCAAAAGTTGTCAGGTTGAAA ATGCAAATTTGCTCATCCCCCCAAAAGTTGTCAGATTGAAA < 41bp 1 0.192963209874613 1 0.278047382831573 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MBNL2 ENSG00000139793 CDS Human protein_coding chr13:97928608 chr13:97928622 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_30800 0 0 1 0 1 Cytosol 1 0.500231643921123 1 0.999536712157754 hm5C_site_30948 DeepMRMD:1;iRNA_m5C:0.999536712157754 30949 chr19 50753045 50753045 1 + G T OV 50753062 + 50753042 50753082 41 CTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT CTCTACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT < 41bp 1 0.22164170507511 1 0.7178675532341 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753062 chr19:50753045 nonsynonymous SNV 0.662 3 4 hm5C_associated_SNPs_30801 0 0 0 0 1 cytosol 1 0.500231644216779 0.5642648935318 0.999536711566442 hm5C_site_30949 DeepMRMD:0.5642648935318;iRNA_m5C:0.999536711566442 30950 chr9 117063983 117063983 1 + C T OV 117063993 + 117063973 117064013 41 CCCCAGAGGGCGGCCCGGCCCCCCGGTAGGTAACTGAGTGC CCCCAGAGGGTGGCCCGGCCCCCCGGTAGGTAACTGAGTGC < 41bp 1 0.410021738323252 1 0.390791445970535 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117063993 chr9:117063983 nonsynonymous SNV 0.171 3 11 hm5C_associated_SNPs_30802 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30950 DeepMRMD:1;iRNA_m5C:0.999536712157815 30951 chr2 64114635 64114635 1 + C A OV 64114634 + 64114614 64114654 41 GGTATTAATGTGCCAAGGAGCCGTTTTCTGCCTGTCAAAAC GGTATTAATGTGCCAAGGAGCAGTTTTCTGCCTGTCAAAAC < 41bp 1 0.416228847197944 1 0.170024275779724 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGP2 ENSG00000169764 CDS Human protein_coding chr2:64114634 chr2:64114635 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_30803 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30951 DeepMRMD:1;iRNA_m5C:0.999536712157815 30952 chr22 26400709 26400709 1 + C A OV 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCAAGCCAG < 41bp 1 0.0239983444311091 1 0.378598928451538 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400709 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_30804 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_30952 DeepMRMD:1;iRNA_m5C:0.999536712157815 30953 chr1 44083209 44083209 1 + C T OV 44083229 + 44083209 44083249 41 CACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG TACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG < 41bp 1 0.373865648198347 1 0.804999351501465 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083229 chr1:44083209 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_30805 0 0 0 0 2 Ribosome 1 0.50023164492339 0.39000129699707 0.999536710153219 hm5C_site_30953 DeepMRMD:0.39000129699707;iRNA_m5C:0.999536710153219 30954 chr22 26291146 26291146 1 + G A OV 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACGAGTGGCAGATGCGCTTCAACTGTGCTCAGATG < 41bp 1 0.0936772570478851 1 0.366064548492432 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291146 nonsynonymous SNV 0.851 3 27 hm5C_associated_SNPs_30806 0 0 1 0 2 chromatin 1 0.500312921237184 1 0.999374157525632 hm5C_site_30954 DeepMRMD:1;iRNA_m5C:0.999374157525632 30955 chr19 10571778 10571778 1 + C A OV 10571761 + 10571741 10571781 41 ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACAAGT < 41bp 1 0.116984060884381 1 0.510739147663116 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10571761 chr19:10571778 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_30807 0 0 0 0 2 chromatin 1 0.500231643921095 0.978521704673768 0.99953671215781 hm5C_site_30955 DeepMRMD:0.978521704673768;iRNA_m5C:0.99953671215781 30956 chr14 96707366 96707366 1 + T A OV 96707365 + 96707345 96707385 41 TCCTGAATGTCGTGGGCTTCCTGCTGCCCCTGAGTGTCATC TCCTGAATGTCGTGGGCTTCCAGCTGCCCCTGAGTGTCATC < 41bp 1 0.689117392883417 1 0.52677971124649 experiment 0.621765214233166 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BDKRB2 ENSG00000168398 CDS Human protein_coding chr14:96707365 chr14:96707366 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_30808 0 0 0 0 0 exosome 1 0.500231644660835 0.94644057750702 0.999536710678329 hm5C_site_30956 DeepMRMD:0.94644057750702;iRNA_m5C:0.999536710678329 30957 chr6 160212129 160212129 1 + G C OV 160212137 + 160212117 160212157 41 GGGCTGGCGGACGGTGTTTCCCTCCCGTGAGTTCTGGCACA GGGCTGGCGGACCGTGTTTCCCTCCCGTGAGTTCTGGCACA < 41bp 1 0.209287441302669 1 0.200336426496506 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160212137 chr6:160212129 synonymous SNV . 0 13 hm5C_associated_SNPs_30809 0 0 1 0 1 Cytosol 1 0.50023178952122 1 0.999536420957559 hm5C_site_30957 DeepMRMD:1;iRNA_m5C:0.999536420957559 30958 chr10 12199963 12199963 1 + C G OV 12199960 + 12199940 12199980 41 CGTTACCGAGGACAGTACAGCAGCTACCCCATCAAACTCTT CGTTACCGAGGACAGTACAGCAGGTACCCCATCAAACTCTT < 41bp 1 0.615494730070314 1 0.629425227642059 experiment 0.769010539859373 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12199960 chr10:12199963 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_30810 0 0 1 0 1 Ribosome 1 0.500231543130676 0.741149544715882 0.999536913738649 hm5C_site_30958 DeepMRMD:0.741149544715882;iRNA_m5C:0.999536913738649 30959 chr8 36692358 36692358 1 + C A OV 36692357 + 36692337 36692377 41 AATCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA AATCCTTTGTGCAGTGATTCCAATGCTGAAGATATTTCCAA < 41bp 1 0.340836956912034 1 0.651835322380066 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36692357 chr8:36692358 nonsynonymous SNV 0.029 0 22 hm5C_associated_SNPs_30811 0 0 0 0 2 unknown 1 0.500231643830129 0.696329355239868 0.999536712339742 hm5C_site_30959 DeepMRMD:0.696329355239868;iRNA_m5C:0.999536712339742 30960 chr2 169622187 169622187 1 + G T OV 169622178 + 169622158 169622198 41 GGTGGGTTTTTAACCTACTGCTATTGCTAGTACAAGGGTTG GGTGGGTTTTTAACCTACTGCTATTGCTATTACAAGGGTTG < 41bp 1 0.0851488229503058 1 0.0948030054569244 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169622178 chr2:169622187 nonsynonymous SNV 0.288 0 30 hm5C_associated_SNPs_30812 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643915979 1 0.999536712168043 hm5C_site_30960 DeepMRMD:1;iRNA_m5C:0.999536712168043 30961 chr9 138377540 138377540 1 + G A OV 138377552 + 138377532 138377572 41 CCAACTCCGAGAGGAGAGAGCGCCTGACCCTCCCGCACACA CCAACTCCAAGAGGAGAGAGCGCCTGACCCTCCCGCACACA < 41bp 1 0.379981902133043 1 0.170334547758102 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138377552 chr9:138377540 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_30813 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30961 DeepMRMD:1;iRNA_m5C:0.999536712157815 30962 chr17 4623693 4623693 1 + T C OV 4623704 + 4623684 4623724 41 CCAGGGATGTCTCTGTGGAGCTGCCTTTTGTTCTTATGCAC CCAGGGATGCCTCTGTGGAGCTGCCTTTTGTTCTTATGCAC < 41bp 1 0.380767606900518 1 0.0963872373104095 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4623704 chr17:4623693 nonsynonymous SNV 0.989 4 10 hm5C_associated_SNPs_30814 0 0 1 0 2 Cytosol 1 0.500231643921127 1 0.999536712157747 hm5C_site_30962 DeepMRMD:1;iRNA_m5C:0.999536712157747 30963 chr1 114223893 114223893 1 + T C OV 114223895 + 114223875 114223915 41 CTCGAGCAATTGAGCTCATTCAGGCTGGTGGAAATAAAGTT CTCGAGCAATTGAGCTCACTCAGGCTGGTGGAAATAAAGTT < 41bp 1 0.49969808574212 1 0.766658186912537 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114223895 chr1:114223893 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_30815 0 0 1 0 2 Cytosol 1 0.500232270235303 0.466683626174926 0.999535459529394 hm5C_site_30963 DeepMRMD:0.466683626174926;iRNA_m5C:0.999535459529394 30964 chr22 18567998 18567998 1 + G T OV 18567978 + 18567958 18567998 41 CTGCCCTTCAAAAAGAGTCTCCTGGCTGCCTTGATCCTCTG CTGCCCTTCAAAAAGAGTCTCCTGGCTGCCTTGATCCTCTT < 41bp 1 0.164041273909878 1 0.116539716720581 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX26 ENSG00000215193 CDS Human protein_coding chr22:18567978 chr22:18567998 nonsynonymous SNV 0.994 2 41 hm5C_associated_SNPs_30816 0 0 1 0 1 Ribosome 1 0.500231643919877 1 0.999536712160246 hm5C_site_30964 DeepMRMD:1;iRNA_m5C:0.999536712160246 30965 chr11 119054034 119054034 1 + G T OV 119054023 + 119054003 119054043 41 GGGTTCAGCGACACCTTGAGCTCCTACTGCGGGATCTGGAA GGGTTCAGCGACACCTTGAGCTCCTACTGCGTGATCTGGAA < 41bp 1 0.326645939368135 1 0.082149863243103 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119054023 chr11:119054034 synonymous SNV . 0 32 hm5C_associated_SNPs_30817 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_30965 DeepMRMD:1;iRNA_m5C:0.999536712157814 30966 chr11 119054033 119054033 1 + G C OV 119054023 + 119054003 119054043 41 GGGTTCAGCGACACCTTGAGCTCCTACTGCGGGATCTGGAA GGGTTCAGCGACACCTTGAGCTCCTACTGCCGGATCTGGAA < 41bp 1 0.332731192741912 1 0.112147450447083 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119054023 chr11:119054033 nonsynonymous SNV 0.888 2 31 hm5C_associated_SNPs_30818 0 0 0 0 0 exosome 1 0.5002316439224 1 0.999536712155199 hm5C_site_30966 DeepMRMD:1;iRNA_m5C:0.999536712155199 30967 chr21 30411809 30411809 1 + C T OV 30411804 + 30411784 30411824 41 CTTTTTGTTTTTCTCTAGAGCAGTGCGGTTTAAAGGCTATC CTTTTTGTTTTTCTCTAGAGCAGTGTGGTTTAAAGGCTATC < 41bp 1 0.321971043728634 1 0.126979678869247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30411804 chr21:30411809 nonsynonymous SNV 0.939 4 26 hm5C_associated_SNPs_30819 0 0 1 0 2 Ribosome 1 0.500231664677678 1 0.999536670644645 hm5C_site_30967 DeepMRMD:1;iRNA_m5C:0.999536670644645 30968 chr11 120776148 120776148 1 + C T OV 120776153 + 120776133 120776173 41 GGATGGCGTGTACGGCGTTCCCGAGGCCAACGGCACCTGGA GGATGGCGTGTACGGTGTTCCCGAGGCCAACGGCACCTGGA < 41bp 1 0.338131625992953 1 0.69212019443512 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120776153 chr11:120776148 synonymous SNV . 0 16 hm5C_associated_SNPs_30820 0 0 0 0 0 membrane 1 0.50023164389714 0.61575961112976 0.99953671220572 hm5C_site_30968 DeepMRMD:0.61575961112976;iRNA_m5C:0.99953671220572 30969 chr5 153760019 153760019 1 + C G OV 153760010 + 153759990 153760030 41 ATCTCTTGGCTTCTTCAGACCGCATTGCTCGGAACCGCAAG ATCTCTTGGCTTCTTCAGACCGCATTGCTGGGAACCGCAAG < 41bp 1 0.191709848997351 1 0.163017392158508 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760010 chr5:153760019 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_30821 0 0 1 0 1 Ribosome 1 0.50023170175512 1 0.99953659648976 hm5C_site_30969 DeepMRMD:1;iRNA_m5C:0.99953659648976 30970 chr5 153760019 153760019 1 + C G OV 153760024 + 153760004 153760044 41 TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC TCAGACCGCATTGCTGGGAACCGCAAGACCATTGTGTGCCC < 41bp 1 0.424541239423771 1 0.163029104471207 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760024 chr5:153760019 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_30822 0 0 1 0 1 Ribosome 1 0.500231642726723 1 0.999536714546553 hm5C_site_30970 DeepMRMD:1;iRNA_m5C:0.999536714546553 30971 chr6 7578101 7578101 1 + T C OV 7578111 + 7578091 7578131 41 AGTCCCCTTCTGGGGTGATTCTGCAAGAGGTATATATGTCA AGTCCCCTTCCGGGGTGATTCTGCAAGAGGTATATATGTCA < 41bp 1 0.674161592329338 1 0.924656450748444 experiment 0.651676815341325 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7578111 chr6:7578101 synonymous SNV . 0 11 hm5C_associated_SNPs_30823 0 0 1 0 2 Nucleus 1 0.50023164277742 0.150687098503112 0.99953671444516 hm5C_site_30971 DeepMRMD:0.150687098503112;iRNA_m5C:0.99953671444516 30972 chr7 73922455 73922455 1 + C T OV 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGTGGACC < 41bp 1 0.52409890266677 1 0.162788093090057 experiment 0.95180219466646 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922455 synonymous SNV . 0 36 hm5C_associated_SNPs_30824 0 0 1 0 2 Nucleus 1 0.500232168535055 1 0.999535662929889 hm5C_site_30972 DeepMRMD:1;iRNA_m5C:0.999535662929889 30973 chr22 26242207 26242207 1 + C T OV 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGTGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC < 41bp 1 0.317256571905785 1 0.150517135858536 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242207 nonsynonymous SNV 0.117 5 6 hm5C_associated_SNPs_30825 0 0 0 0 1 chromatin 1 0.500231643931608 1 0.999536712136784 hm5C_site_30973 DeepMRMD:1;iRNA_m5C:0.999536712136784 30974 chr12 93968573 93968573 1 + T A OV 93968564 + 93968544 93968584 41 AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT AAAAGAGGCACCAGAAGGAACTTTCTTGAATAGAGATAGCT < 41bp 1 0.0715622723084156 1 0.105598449707031 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93968564 chr12:93968573 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_30826 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_30974 DeepMRMD:1;iRNA_m5C:0.999536712157815 30975 chr9 131345047 131345047 1 + G A OV 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTACAGC < 41bp 1 0.116239678731588 1 0.103956699371338 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345047 synonymous SNV . 0 37 hm5C_associated_SNPs_30827 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_30975 DeepMRMD:1;iRNA_m5C:0.999536712157815 30976 chr11 62550254 62550254 1 + G T OV 62550249 + 62550229 62550269 41 GCAGATCCTGTGCGGCCGCTCTGCTGCCACTATGGAGCCGT GCAGATCCTGTGCGGCCGCTCTGCTTCCACTATGGAGCCGT < 41bp 1 0.678514558419275 1 0.351754814386368 experiment 0.64297088316145 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550249 chr11:62550254 nonsynonymous SNV 0.983 1 26 hm5C_associated_SNPs_30828 0 0 1 0 2 Ribosome 1 0.500231643922387 1 0.999536712155227 hm5C_site_30976 DeepMRMD:1;iRNA_m5C:0.999536712155227 30977 chr9 104307065 104307065 1 + G A OV 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTGATAGTGGAAGAAGCAGTGCAGGAGCTGAACTCTT < 41bp 1 0.311196785114434 1 0.727402687072754 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307065 synonymous SNV . 0 16 hm5C_associated_SNPs_30829 0 0 1 0 1 nucleus 1 0.500231643921092 0.545194625854492 0.999536712157815 hm5C_site_30977 DeepMRMD:0.545194625854492;iRNA_m5C:0.999536712157815 30978 chr1 57157075 57157075 1 + T G OV 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGGGATCAGCACTCCAACAGATTTTTTTAT < 41bp 1 0.0568076024247184 1 0.299238264560699 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157075 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_30830 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30978 DeepMRMD:1;iRNA_m5C:0.999536712157815 30979 chr14 24568341 24568341 1 + G C OV 24568331 + 24568311 24568351 41 GTGCCCGACCAGCGGGAGATCATCTCCTTCGGCAGCGGCTA GTGCCCGACCAGCGGGAGATCATCTCCTTCCGCAGCGGCTA < 41bp 1 0.316602143273028 1 0.160823702812195 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24568331 chr14:24568341 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_30831 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30979 DeepMRMD:1;iRNA_m5C:0.999536712157815 30980 chr4 26407824 26407824 1 + G A OV 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAACGAGGGGATCAAACAGTACTTATTCTTCAT < 41bp 1 0.30193928344731 1 0.177755862474442 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407824 synonymous SNV . 0 11 hm5C_associated_SNPs_30832 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921163 1 0.999536712157674 hm5C_site_30980 DeepMRMD:1;iRNA_m5C:0.999536712157674 30981 chr15 63009818 63009818 1 + C T OV 63009833 + 63009813 63009853 41 CATCGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACC CATCGTCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACC < 41bp 1 0.323722417629235 1 0.108073890209198 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009833 chr15:63009818 nonsynonymous SNV 0.962 4 6 hm5C_associated_SNPs_30833 0 0 0 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_30981 DeepMRMD:1;iRNA_m5C:0.999536712157815 30982 chr15 63009818 63009818 1 + C T OV 63009836 + 63009816 63009856 41 CGCCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACCCTG CGTCGCCTCCCAGAATGCAGCTGTTTCCAACAAGAACCCTG < 41bp 1 0.0919332623425188 1 0.0429312288761139 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63009836 chr15:63009818 nonsynonymous SNV 0.962 4 3 hm5C_associated_SNPs_30834 0 0 0 0 2 Nucleus 1 0.500231645293621 1 0.999536709412759 hm5C_site_30982 DeepMRMD:1;iRNA_m5C:0.999536709412759 30983 chr7 100275154 100275154 1 + A G OV 100275144 + 100275124 100275164 41 CACGCCATCCCGCTGCGCTCCTCCTGGGTAATGACCTGTGC CACGCCATCCCGCTGCGCTCCTCCTGGGTAGTGACCTGTGC < 41bp 1 0.579605725820917 1 0.785019516944885 experiment 0.840788548358166 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275144 chr7:100275154 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_30835 0 0 1 0 1 Cytosol 1 0.500231645183395 0.42996096611023 0.999536709633211 hm5C_site_30983 DeepMRMD:0.42996096611023;iRNA_m5C:0.999536709633211 30984 chr12 111885191 111885191 1 + C G OV 111885210 + 111885190 111885230 41 TCCTGCTACCCCTGGTTCCACGGCCCCATCTCCAGAGTGAA TGCTGCTACCCCTGGTTCCACGGCCCCATCTCCAGAGTGAA < 41bp 1 0.262506696437719 1 0.50909948348999 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111885210 chr12:111885191 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_30836 0 0 1 0 1 Ribosome 1 0.500231643921094 0.98180103302002 0.999536712157813 hm5C_site_30984 DeepMRMD:0.98180103302002;iRNA_m5C:0.999536712157813 30985 chr4 6862992 6862992 1 + G T OV 6862975 + 6862955 6862995 41 GATTCGCCCTCGCTCGTGGTCTTCTGGCTCCAGTGAAGCAG GATTCGCCCTCGCTCGTGGTCTTCTGGCTCCAGTGAATCAG < 41bp 1 0.314379632183218 1 0.0498871803283691 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0232 ENSG00000170871 CDS Human protein_coding chr4:6862975 chr4:6862992 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_30837 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30985 DeepMRMD:1;iRNA_m5C:0.999536712157815 30986 chr22 29695301 29695301 1 + C A OV 29695312 + 29695292 29695332 41 GCTTCCTCCCGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG GCTTCCTCCAGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG < 41bp 1 0.217312206255687 1 0.616612732410431 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695312 chr22:29695301 nonsynonymous SNV 0.993 3 10 hm5C_associated_SNPs_30838 0 0 1 0 2 Cytosol 1 0.500231643921092 0.766774535179138 0.999536712157815 hm5C_site_30986 DeepMRMD:0.766774535179138;iRNA_m5C:0.999536712157815 30987 chr19 49464818 49464818 1 + C A OV 49464798 + 49464778 49464818 41 CCTGTCTCCAGGACGGCCTCCTCTCCTACTTTGGGACGCCC CCTGTCTCCAGGACGGCCTCCTCTCCTACTTTGGGACGCCA < 41bp 1 0.144782781847221 1 0.185932040214539 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAX ENSG00000087088 CDS Human protein_coding chr19:49464798 chr19:49464818 synonymous SNV . 0 41 hm5C_associated_SNPs_30840 0 0 1 1 1 Cytosol 1 0.500231644057997 1 0.999536711884006 hm5C_site_30987 DeepMRMD:1;iRNA_m5C:0.999536711884006 30988 chr4 79399115 79399115 1 + T A OV 79399112 + 79399092 79399132 41 GAATTCACCCAGGCGAAGGTCATTATCAACGATACCGAGGA GAATTCACCCAGGCGAAGGTCATAATCAACGATACCGAGGA < 41bp 1 0.118145622756576 1 0.396095305681229 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79399112 chr4:79399115 synonymous SNV . 0 24 hm5C_associated_SNPs_30841 0 0 1 0 0 Nucleus 1 0.500234788029671 1 0.999530423940659 hm5C_site_30988 DeepMRMD:1;iRNA_m5C:0.999530423940659 30989 chr22 41735127 41735127 1 + G A OV 41735129 + 41735109 41735149 41 AGGACCCTCCCCAGCACCGACAGCCTGGATGACTTCTCAGA AGGACCCTCCCCAGCACCAACAGCCTGGATGACTTCTCAGA < 41bp 1 0.276254245535558 1 0.218957453966141 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735129 chr22:41735127 nonsynonymous SNV 0.776 1 19 hm5C_associated_SNPs_30842 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_30989 DeepMRMD:1;iRNA_m5C:0.999536712157815 30990 chr8 36692362 36692362 1 + C T OV 36692357 + 36692337 36692377 41 AATCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA AATCCTTTGTGCAGTGATTCCCATGTTGAAGATATTTCCAA < 41bp 1 0.192225602276123 1 0.23422247171402 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36692357 chr8:36692362 nonsynonymous SNV 0.088 2 26 hm5C_associated_SNPs_30843 0 0 0 0 2 unknown 1 0.500231643847001 1 0.999536712305998 hm5C_site_30990 DeepMRMD:1;iRNA_m5C:0.999536712305998 30991 chr5 176520496 176520496 1 + C G OV 176520483 + 176520463 176520503 41 GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCG GCGTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCGGGCCTCG < 41bp 1 0.133553830235689 1 0.0607220828533173 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520483 chr5:176520496 nonsynonymous SNV 0.012 0 34 hm5C_associated_SNPs_30844 0 0 1 0 3 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_30991 DeepMRMD:1;iRNA_m5C:0.999536712157818 30992 chr2 46808143 46808143 1 + T C OV 46808147 + 46808127 46808167 41 TTTGATGAGGCTATCATAGCCATTTTAACTCCAAAGAAACA TTTGATGAGGCTATCACAGCCATTTTAACTCCAAAGAAACA < 41bp 1 0.0504120076865139 1 0.0617367625236511 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RHOQ ENSG00000119729 CDS Human protein_coding chr2:46808147 chr2:46808143 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_30845 0 0 0 0 1 nucleoplasm 1 0.500221619648094 1 0.999556760703813 hm5C_site_30992 DeepMRMD:1;iRNA_m5C:0.999556760703813 30993 chrX 73042907 73042907 1 + A G OV 73042925 - 73042905 73042945 41 GTATTTGCTCATTGGTCTGGCTTAGAGACAGGAAGACATAT GTATTTGCTCATTGGTCTGGCTTAGAGACAGGAAGACACAT < 41bp 1 0.0588908362598779 1 0.0474201440811157 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042925 chrX:73042907 . . 0 39 hm5C_associated_SNPs_30846 0 0 1 1 0 unknown 1 0.500231643921096 1 0.999536712157807 hm5C_site_30993 DeepMRMD:1;iRNA_m5C:0.999536712157807 30994 chr17 66038278 66038278 1 + T C OV 66038276 + 66038256 66038296 41 TTGATTCCGAAATTTGTGTCCTTCTTGGGCAGAACTGATTG TTGATTCCGAAATTTGTGTCCTCCTTGGGCAGAACTGATTG < 41bp 1 0.533931839136298 1 0.802408814430237 experiment 0.932136321727403 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66038276 chr17:66038278 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_30847 0 0 1 0 1 Cytosol 1 0.500231678852581 0.395182371139526 0.999536642294838 hm5C_site_30994 DeepMRMD:0.395182371139526;iRNA_m5C:0.999536642294838 30995 chr2 233671363 233671363 1 + A T OV 233671347 + 233671327 233671367 41 GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATG GGGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCTTATG < 41bp 1 0.121527482528067 1 0.0490192174911499 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671347 chr2:233671363 nonsynonymous SNV 0.987 2 37 hm5C_associated_SNPs_30848 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30995 DeepMRMD:1;iRNA_m5C:0.999536712157815 30996 chr2 233671363 233671363 1 + A T OV 233671348 + 233671328 233671368 41 GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGG GGTTCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCTTATGG < 41bp 1 0.18352233617564 1 0.150334060192108 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671348 chr2:233671363 nonsynonymous SNV 0.987 2 36 hm5C_associated_SNPs_30849 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30996 DeepMRMD:1;iRNA_m5C:0.999536712157815 30997 chr2 233671363 233671363 1 + A T OV 233671351 + 233671331 233671371 41 TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAA TCCCTTTTCTCCAGGTCCAGCTCCCCCTCCTCTTATGGTAA < 41bp 1 0.102726110208024 1 0.418337285518646 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671351 chr2:233671363 nonsynonymous SNV 0.987 2 33 hm5C_associated_SNPs_30850 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30997 DeepMRMD:1;iRNA_m5C:0.999536712157815 30998 chr2 233671363 233671363 1 + A T OV 233671354 + 233671334 233671374 41 CTTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTA CTTTTCTCCAGGTCCAGCTCCCCCTCCTCTTATGGTAAGTA < 41bp 1 0.0455916616316666 1 0.06548210978508 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671354 chr2:233671363 nonsynonymous SNV 0.987 2 30 hm5C_associated_SNPs_30851 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_30998 DeepMRMD:1;iRNA_m5C:0.999536712157815 30999 chr2 233671363 233671363 1 + A T OV 233671355 + 233671335 233671375 41 TTTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTAC TTTTCTCCAGGTCCAGCTCCCCCTCCTCTTATGGTAAGTAC < 41bp 1 0.0485040549527913 1 0.143973976373672 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671355 chr2:233671363 nonsynonymous SNV 0.987 2 29 hm5C_associated_SNPs_30852 0 0 1 0 1 Nucleus 1 0.500231643919772 1 0.999536712160457 hm5C_site_30999 DeepMRMD:1;iRNA_m5C:0.999536712160457 31000 chr2 233671363 233671363 1 + A T OV 233671356 + 233671336 233671376 41 TTTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACC TTTCTCCAGGTCCAGCTCCCCCTCCTCTTATGGTAAGTACC < 41bp 1 0.0246184888069601 1 0.105941951274872 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671356 chr2:233671363 nonsynonymous SNV 0.987 2 28 hm5C_associated_SNPs_30853 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31000 DeepMRMD:1;iRNA_m5C:0.999536712157815 31001 chr2 233671363 233671363 1 + A T OV 233671357 + 233671337 233671377 41 TTCTCCAGGTCCAGCTCCCCCTCCTCATATGGTAAGTACCT TTCTCCAGGTCCAGCTCCCCCTCCTCTTATGGTAAGTACCT < 41bp 1 0.244228277273653 1 0.184727936983109 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233671357 chr2:233671363 nonsynonymous SNV 0.987 2 27 hm5C_associated_SNPs_30854 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_31001 DeepMRMD:1;iRNA_m5C:0.999536712157816 31002 chr6 168291648 168291648 1 + G T OV 168291650 + 168291630 168291670 41 AAAGGAGAGAGCTGACGGGTCTGGCTATGGCTCCACCCTTC AAAGGAGAGAGCTGACGGTTCTGGCTATGGCTCCACCCTTC < 41bp 1 0.68211439273427 1 0.389436036348343 experiment 0.63577121453146 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168291650 chr6:168291648 synonymous SNV . 0 19 hm5C_associated_SNPs_30855 0 0 1 0 1 unknown 1 0.500231640834002 1 0.999536718331997 hm5C_site_31002 DeepMRMD:1;iRNA_m5C:0.999536718331997 31003 chr14 37754635 37754635 1 + G A OV 37754619 + 37754599 37754639 41 GGAGAGAGATGAAGCAATTGCACGAGCCAAGCATATGGAAA GGAGAGAGATGAAGCAATTGCACGAGCCAAGCATATAGAAA < 41bp 1 0.493624092074788 1 0.514828979969025 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37754619 chr14:37754635 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_30856 0 0 1 0 0 chromatin 1 0.50022795199451 0.97034204006195 0.999544096010979 hm5C_site_31003 DeepMRMD:0.97034204006195;iRNA_m5C:0.999544096010979 31004 chr1 153742690 153742690 1 + G C OV 153742703 + 153742683 153742723 41 TAGACTGGGAGACCTTTGAGCAGTATTGTGCCTGGCAGCTC TAGACTGCGAGACCTTTGAGCAGTATTGTGCCTGGCAGCTC < 41bp 1 0.593389925138645 1 0.196445226669312 experiment 0.813220149722711 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153742703 chr1:153742690 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_30857 0 0 1 0 1 chromatin 1 0.500231643921102 1 0.999536712157796 hm5C_site_31004 DeepMRMD:1;iRNA_m5C:0.999536712157796 31005 chr4 5733349 5733349 1 + G T OV 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCAGCCGCACCTTCCTCCGTGTGAACGCCTTCCC < 41bp 1 0.0520740321035781 1 0.149190127849579 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733349 synonymous SNV . 0 27 hm5C_associated_SNPs_30859 0 0 1 0 1 Nucleus 1 0.500231643917025 1 0.999536712165951 hm5C_site_31005 DeepMRMD:1;iRNA_m5C:0.999536712165951 31006 chr19 803583 803583 1 + C A OV 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTATACTT < 41bp 1 0.354895889401893 1 0.272875726222992 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803583 nonsynonymous SNV 0.397 3 36 hm5C_associated_SNPs_30860 0 0 1 0 2 Cytosol 1 0.500231643921082 1 0.999536712157836 hm5C_site_31006 DeepMRMD:1;iRNA_m5C:0.999536712157836 31007 chr15 57554348 57554348 1 + T C OV 57554338 + 57554318 57554358 41 CAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCA CAGTCTCAATGGCAATCATTCAGTCCTGTCCAGTACAGTCA < 41bp 1 0.177239582214747 1 0.15810638666153 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554338 chr15:57554348 synonymous SNV . 0 31 hm5C_associated_SNPs_30861 0 0 1 0 2 Cytosol 1 0.500231643921206 1 0.999536712157588 hm5C_site_31007 DeepMRMD:1;iRNA_m5C:0.999536712157588 31008 chr15 57554348 57554348 1 + T C OV 57554343 + 57554323 57554363 41 TCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACT TCAATGGCAATCATTCAGTCCTGTCCAGTACAGTCACTACT < 41bp 1 0.0762079613031254 1 0.0329412221908569 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554343 chr15:57554348 synonymous SNV . 0 26 hm5C_associated_SNPs_30862 0 0 1 0 2 Cytosol 1 0.500233860548456 1 0.999532278903089 hm5C_site_31008 DeepMRMD:1;iRNA_m5C:0.999532278903089 31009 chr15 57554348 57554348 1 + T C OV 57554353 + 57554333 57554373 41 TCATTCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAG TCATTCAGTCCTGTCCAGTACAGTCACTACTTCAAGCACAG < 41bp 1 0.142608774060143 1 0.0714970529079437 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554353 chr15:57554348 synonymous SNV . 0 16 hm5C_associated_SNPs_30863 0 0 1 0 2 Cytosol 1 0.500231643920876 1 0.999536712158249 hm5C_site_31009 DeepMRMD:1;iRNA_m5C:0.999536712158249 31010 chr15 57554348 57554348 1 + T C OV 57554357 + 57554337 57554377 41 TCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCT TCAGTCCTGTCCAGTACAGTCACTACTTCAAGCACAGACCT < 41bp 1 0.512401031735325 1 0.267135560512543 experiment 0.97519793652935 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554357 chr15:57554348 synonymous SNV . 0 12 hm5C_associated_SNPs_30864 0 0 1 0 2 Cytosol 1 0.500231643796361 1 0.999536712407278 hm5C_site_31010 DeepMRMD:1;iRNA_m5C:0.999536712407278 31011 chr15 57554348 57554348 1 + T C OV 57554359 + 57554339 57554379 41 AGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCTGA AGTCCTGTCCAGTACAGTCACTACTTCAAGCACAGACCTGA < 41bp 1 0.344953886115236 1 0.0856913626194 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554359 chr15:57554348 synonymous SNV . 0 10 hm5C_associated_SNPs_30865 0 0 1 0 2 Cytosol 1 0.500231756385451 1 0.999536487229098 hm5C_site_31011 DeepMRMD:1;iRNA_m5C:0.999536487229098 31012 chr15 57554348 57554348 1 + T C OV 57554365 + 57554345 57554385 41 GTCTAGTACAGTCACTACTTCAAGCACAGACCTGAACCATA GTCCAGTACAGTCACTACTTCAAGCACAGACCTGAACCATA < 41bp 1 0.228313989845441 1 0.524740040302277 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554365 chr15:57554348 synonymous SNV . 0 4 hm5C_associated_SNPs_30866 0 0 1 0 2 Cytosol 1 0.500231631677361 0.950519919395446 0.999536736645277 hm5C_site_31012 DeepMRMD:0.950519919395446;iRNA_m5C:0.999536736645277 31013 chr7 99123760 99123760 1 + G C OV 99123761 + 99123741 99123781 41 AACTTTATTCAGCATCGGCGCATCCACACTGGAGAAAAACC AACTTTATTCAGCATCGGCCCATCCACACTGGAGAAAAACC < 41bp 1 0.0289866326601753 1 0.104123681783676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZKSCAN5 ENSG00000196652 CDS Human protein_coding chr7:99123761 chr7:99123760 nonsynonymous SNV 0.992 4 20 hm5C_associated_SNPs_30867 0 0 1 0 0 Cytosol 1 0.500231643921808 1 0.999536712156384 hm5C_site_31013 DeepMRMD:1;iRNA_m5C:0.999536712156384 31014 chr17 27000471 27000471 1 + G A OV 27000491 + 27000471 27000511 41 GATGAAGGCGAGGTGGTACCCCGAGTCACCAAGAAATTTGT AATGAAGGCGAGGTGGTACCCCGAGTCACCAAGAAATTTGT < 41bp 1 0.433259286172578 1 0.806407928466797 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27000491 chr17:27000471 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_30868 0 0 1 0 2 Cytosol 1 0.500231643921092 0.387184143066406 0.999536712157815 hm5C_site_31014 DeepMRMD:0.387184143066406;iRNA_m5C:0.999536712157815 31015 chr20 35862446 35862446 1 + C T OV 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTTTC < 41bp 1 0.442357620219012 1 0.359706193208694 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862446 synonymous SNV . 0 39 hm5C_associated_SNPs_30869 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31015 DeepMRMD:1;iRNA_m5C:0.999536712157815 31016 chr17 73486372 73486372 1 + A C OV 73486373 + 73486353 73486393 41 AGTCCTCTGGGTTCTGGCAACTGCCTGTGGAGAGGCCCGTG AGTCCTCTGGGTTCTGGCACCTGCCTGTGGAGAGGCCCGTG < 41bp 1 0.432508435215001 1 0.0931978821754456 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73486373 chr17:73486372 nonsynonymous SNV 0.973 3 20 hm5C_associated_SNPs_30870 0 0 1 0 2 Cytosol 1 0.500231643921099 1 0.999536712157803 hm5C_site_31016 DeepMRMD:1;iRNA_m5C:0.999536712157803 31017 chr10 105172955 105172955 1 + G A OV 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTCCTACAGCCTGGACACCCACTCACCCGACTCTCTTGCC < 41bp 1 0.151664942161367 1 0.0667211711406708 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172955 nonsynonymous SNV 0.490 0 18 hm5C_associated_SNPs_30871 0 0 1 0 1 Nucleus 1 0.500231643864532 1 0.999536712270935 hm5C_site_31017 DeepMRMD:1;iRNA_m5C:0.999536712270935 31018 chr20 19970881 19970881 1 + A G OV 19970861 + 19970841 19970881 41 GAGAAAATCAAAGTCAAGTTCATGACCATGCAGAAGATGTA GAGAAAATCAAAGTCAAGTTCATGACCATGCAGAAGATGTG < 41bp 1 0.420704800458826 1 0.153432309627533 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19970861 chr20:19970881 nonsynonymous SNV 0.995 3 41 hm5C_associated_SNPs_30872 0 0 0 0 1 Nucleus 1 0.500231866368654 1 0.999536267262691 hm5C_site_31018 DeepMRMD:1;iRNA_m5C:0.999536267262691 31019 chr8 42927440 42927440 1 + G C OV 42927423 + 42927403 42927443 41 GATGCAAAGAATTATCATGCCTGGCAGCATCGACAATGGGT GATGCAAAGAATTATCATGCCTGGCAGCATCGACAATCGGT < 41bp 1 0.462393501976013 1 0.0525716245174408 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FNTA ENSG00000168522;ENSG00000254673 CDS Human other chr8:42927423 chr8:42927440 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_30873 0 0 0 0 1 Endoplasmic reticulum 1 0.500231727165259 1 0.999536545669481 hm5C_site_31019 DeepMRMD:1;iRNA_m5C:0.999536545669481 31020 chr5 32093024 32093024 1 + T G OV 32093044 + 32093024 32093064 41 TTCTAGTCTCAGCGGGGGACCAGCAAAGATTACAGTCTGTT GTCTAGTCTCAGCGGGGGACCAGCAAAGATTACAGTCTGTT < 41bp 1 0.153838734330659 1 0.429328799247742 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32093044 chr5:32093024 nonsynonymous SNV 0.898 4 1 hm5C_associated_SNPs_30874 0 0 0 0 1 chromatin 1 0.500231644649592 1 0.999536710700816 hm5C_site_31020 DeepMRMD:1;iRNA_m5C:0.999536710700816 31021 chr3 10127584 10127584 1 + C A OV 10127599 + 10127579 10127619 41 ACAGCCAGCCTTTGGAGGAACTACTCAGGTGAGTCATAACT ACAGCAAGCCTTTGGAGGAACTACTCAGGTGAGTCATAACT < 41bp 1 0.16363660049984 1 0.074846088886261 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10127599 chr3:10127584 nonsynonymous SNV 0.103 0 6 hm5C_associated_SNPs_30875 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31021 DeepMRMD:1;iRNA_m5C:0.999536712157815 31022 chr10 17276768 17276768 1 + G A OV 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT CGCCAGGCAAAGCAGGAGTCCACTGAGTACCAGAGACAGGT < 41bp 1 0.27838676799081 1 0.121511608362198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276768 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_30876 0 0 1 0 2 Ribosome 1 0.500231643861889 1 0.999536712276223 hm5C_site_31022 DeepMRMD:1;iRNA_m5C:0.999536712276223 31023 chr10 124921870 124921870 1 + A G OV 124921851 + 124921831 124921871 41 ATGCCTTCAAATGTCACAGACTAAAAGAAAATAATATTGAG ATGCCTTCAAATGTCACAGACTAAAAGAAAATAATATTGGG < 41bp 1 0.496299526726891 1 0.5065798163414 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BUB3 ENSG00000154473 CDS Human protein_coding chr10:124921851 chr10:124921870 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_30877 0 0 1 0 0 Ribosome 1 0.50023164999811 0.9868403673172 0.999536700003779 hm5C_site_31023 DeepMRMD:0.9868403673172;iRNA_m5C:0.999536700003779 31024 chr17 48149481 48149481 1 + C G OV 48149482 + 48149462 48149502 41 TCACTCCTTCTTCATGGCCCCAGTGGCTCTGCCTTTGGTTT TCACTCCTTCTTCATGGCCGCAGTGGCTCTGCCTTTGGTTT < 41bp 1 0.155932572786381 1 0.180776566267014 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48149482 chr17:48149481 nonsynonymous SNV 0.994 4 20 hm5C_associated_SNPs_30878 0 0 0 0 0 Cytosol 1 0.500232021753066 1 0.999535956493868 hm5C_site_31024 DeepMRMD:1;iRNA_m5C:0.999535956493868 31025 chr19 18679363 18679363 1 + C T OV 18679364 + 18679344 18679384 41 TGAGCCCCGGCTTCGAGGACCTGTCCCATGTCCAGCCTGGC TGAGCCCCGGCTTCGAGGATCTGTCCCATGTCCAGCCTGGC < 41bp 1 0.173428702720202 1 0.0972526669502258 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KXD1 ENSG00000105700 CDS Human protein_coding chr19:18679364 chr19:18679363 synonymous SNV . 0 20 hm5C_associated_SNPs_30879 0 0 1 0 0 Ribosome 1 0.500231706961593 1 0.999536586076814 hm5C_site_31025 DeepMRMD:1;iRNA_m5C:0.999536586076814 31026 chr21 17250151 17250151 1 + G C OV 17250131 + 17250111 17250151 41 TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTC < 41bp 1 0.518039027149889 1 0.406304895877838 experiment 0.963921945700221 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP25 ENSG00000155313 CDS Human protein_coding chr21:17250131 chr21:17250151 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_30880 0 0 1 0 1 Cytosol 1 0.50023124736924 1 0.999537505261519 hm5C_site_31026 DeepMRMD:1;iRNA_m5C:0.999537505261519 31027 chr19 42392892 42392892 1 + G A OV 42392901 + 42392881 42392921 41 CCCACCTCATGGCCCTCCTGCAGCACGTGGCCCTGCAGTTT CCCACCTCATGACCCTCCTGCAGCACGTGGCCCTGCAGTTT < 41bp 1 0.499768995804621 1 0.346749097108841 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392901 chr19:42392892 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_30881 0 0 1 0 2 Cytosol 1 0.500231643921081 1 0.999536712157838 hm5C_site_31027 DeepMRMD:1;iRNA_m5C:0.999536712157838 31028 chr19 42392892 42392892 1 + G A OV 42392911 + 42392891 42392931 41 GGCCCTCCTGCAGCACGTGGCCCTGCAGTTTGAGCCAGGAC GACCCTCCTGCAGCACGTGGCCCTGCAGTTTGAGCCAGGAC < 41bp 1 0.073877379583343 1 0.0664577186107635 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392911 chr19:42392892 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_30882 0 0 1 0 2 Cytosol 1 0.500231643921096 1 0.999536712157807 hm5C_site_31028 DeepMRMD:1;iRNA_m5C:0.999536712157807 31029 chr6 3015782 3015782 1 + A T OV 3015789 + 3015769 3015809 41 GCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA GCTGTACTGGTTCTGCGTGCCAGCCATCCTGAAGGGCTGGA < 41bp 1 0.432495953842077 1 0.236064076423645 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015789 chr6:3015782 nonsynonymous SNV 0.488 4 14 hm5C_associated_SNPs_30883 0 0 1 0 2 Ribosome 1 0.500231643921046 1 0.999536712157909 hm5C_site_31029 DeepMRMD:1;iRNA_m5C:0.999536712157909 31030 chr3 61975351 61975351 1 + T A OV 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGTCAGCTGTGGGGGCCGACACCAGTCTCCTATTGAC < 41bp 1 0.29066988102299 1 0.441435992717743 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975351 synonymous SNV . 0 23 hm5C_associated_SNPs_30884 0 0 1 0 1 Ribosome 1 0.500232230769331 1 0.999535538461337 hm5C_site_31030 DeepMRMD:1;iRNA_m5C:0.999535538461337 31031 chr6 31602045 31602045 1 + C G OV 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTGTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG < 41bp 1 0.541203188987209 1 0.207151740789413 experiment 0.917593622025582 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602045 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_30885 0 0 1 0 2 Ribosome 1 0.50023164392111 1 0.999536712157781 hm5C_site_31031 DeepMRMD:1;iRNA_m5C:0.999536712157781 31032 chr6 31602045 31602045 1 + C G OV 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTGTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG < 41bp 1 0.530479647712105 1 0.804163336753845 experiment 0.93904070457579 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602045 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_30886 0 0 1 0 2 Ribosome 1 0.500231643921089 0.39167332649231 0.999536712157822 hm5C_site_31032 DeepMRMD:0.39167332649231;iRNA_m5C:0.999536712157822 31033 chr18 13096261 13096261 1 + C T OV 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTGGCCAGTGCATTGCCTCACAGTCACGCCGCAGCATGGAT < 41bp 1 0.114787349240405 1 0.0915606617927551 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096261 nonsynonymous SNV 0.992 4 9 hm5C_associated_SNPs_30887 0 0 1 1 1 Nucleus 1 0.500232146355625 1 0.999535707288749 hm5C_site_31033 DeepMRMD:1;iRNA_m5C:0.999535707288749 31034 chr8 48883167 48883167 1 + G A OV 48883170 + 48883150 48883190 41 ACATCTTGCTGTGTGGCGACCCTGGTACCAGCAAGTCCCAG ACATCTTGCTGTGTGGCAACCCTGGTACCAGCAAGTCCCAG < 41bp 1 0.381784460793978 1 0.416838347911835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48883170 chr8:48883167 nonsynonymous SNV 0.912 4 18 hm5C_associated_SNPs_30888 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31034 DeepMRMD:1;iRNA_m5C:0.999536712157815 31035 chr18 13096263 13096263 1 + C T OV 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTGGCCAGCGTATTGCCTCACAGTCACGCCGCAGCATGGAT < 41bp 1 0.114560790276324 1 0.148914635181427 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096263 nonsynonymous SNV 0.991 4 11 hm5C_associated_SNPs_30889 0 0 1 1 1 Nucleus 1 0.500231644036956 1 0.999536711926088 hm5C_site_31035 DeepMRMD:1;iRNA_m5C:0.999536711926088 31036 chr2 217364707 217364707 1 + C T OV 217364687 + 217364667 217364707 41 TATAGACCAAGATGAAGAGACGAGCTGTGGGGATCTGGCAC TATAGACCAAGATGAAGAGACGAGCTGTGGGGATCTGGCAT < 41bp 1 0.620629675424509 1 0.458844125270844 experiment 0.758740649150982 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364687 chr2:217364707 synonymous SNV . 0 41 hm5C_associated_SNPs_30890 0 0 1 0 2 Cytosol 1 0.500231643091316 1 0.999536713817368 hm5C_site_31036 DeepMRMD:1;iRNA_m5C:0.999536713817368 31037 chr2 217364707 217364707 1 + C T OV 217364705 + 217364685 217364725 41 GACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAG GACGAGCTGTGGGGATCTGGCATTGTGGTTCCTGCATGAAG < 41bp 1 0.41594933357456 1 0.121790856122971 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL37A ENSG00000197756 CDS Human protein_coding chr2:217364705 chr2:217364707 synonymous SNV . 0 23 hm5C_associated_SNPs_30891 0 0 1 0 2 Cytosol 1 0.500231643751965 1 0.999536712496071 hm5C_site_31037 DeepMRMD:1;iRNA_m5C:0.999536712496071 31038 chr7 99661772 99661772 1 + A C OV 99661756 + 99661736 99661776 41 GTGCACCAAGTGTGGGAAAGCTTTCAGCCACAGCTCAAACC GTGCACCAAGTGTGGGAAAGCTTTCAGCCACAGCTCCAACC < 41bp 1 0.152105124983439 1 0.0340260565280914 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN21 ENSG00000166529 CDS Human protein_coding chr7:99661756 chr7:99661772 nonsynonymous SNV 0.993 1 37 hm5C_associated_SNPs_30892 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31038 DeepMRMD:1;iRNA_m5C:0.999536712157815 31039 chr19 46509877 46509877 1 + C A OV 46509891 + 46509871 46509911 41 CGGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC CGGAACAGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC < 41bp 1 0.122427568762207 1 0.0816678404808044 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509891 chr19:46509877 nonsynonymous SNV 0.937 1 7 hm5C_associated_SNPs_30893 0 0 1 0 1 chromatin 1 0.500231643921031 1 0.999536712157939 hm5C_site_31039 DeepMRMD:1;iRNA_m5C:0.999536712157939 31040 chr19 46509877 46509877 1 + C A OV 46509892 + 46509872 46509912 41 GGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCCC GGAACAGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCCC < 41bp 1 0.29136637264222 1 0.0567793548107147 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509892 chr19:46509877 nonsynonymous SNV 0.937 1 6 hm5C_associated_SNPs_30894 0 0 1 0 1 chromatin 1 0.500231643921203 1 0.999536712157593 hm5C_site_31040 DeepMRMD:1;iRNA_m5C:0.999536712157593 31041 chr21 47975908 47975908 1 + A C OV 47975902 + 47975882 47975922 41 TCCTGTTTAACAGATGACATCCCAAAAAAGAAGATAGCAAG TCCTGTTTAACAGATGACATCCCAAACAAGAAGATAGCAAG < 41bp 1 0.167245317910054 1 0.518504977226257 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47975902 chr21:47975908 nonsynonymous SNV 0.995 4 27 hm5C_associated_SNPs_30896 0 0 1 0 2 Cytosol 1 0.500234100059863 0.962990045547486 0.999531799880274 hm5C_site_31041 DeepMRMD:0.962990045547486;iRNA_m5C:0.999531799880274 31042 chr19 10935775 10935775 1 + G T OV 10935765 + 10935745 10935785 41 GATGGGGCCCAGGAGAACACCTTCTCCATGGACCCCCAACT GATGGGGCCCAGGAGAACACCTTCTCCATGTACCCCCAACT < 41bp 1 0.143973997743491 1 0.156082719564438 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10935765 chr19:10935775 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_30897 0 0 1 0 1 Nucleus 1 0.500231643921139 1 0.999536712157722 hm5C_site_31042 DeepMRMD:1;iRNA_m5C:0.999536712157722 31043 chrX 47104861 47104861 1 + C A OV 47104877 + 47104857 47104897 41 AGACCCTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG AGACACTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG < 41bp 1 0.317365447215309 1 0.293574452400208 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47104877 chrX:47104861 synonymous SNV . 0 5 hm5C_associated_SNPs_30898 0 0 1 0 2 cytosol 1 0.500231642369002 1 0.999536715261996 hm5C_site_31043 DeepMRMD:1;iRNA_m5C:0.999536715261996 31044 chrX 47104862 47104862 1 + C T OV 47104877 + 47104857 47104897 41 AGACCCTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG AGACCTTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG < 41bp 1 0.308925848232844 1 0.275924861431122 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47104877 chrX:47104862 synonymous SNV . 0 6 hm5C_associated_SNPs_30899 0 0 1 0 2 cytosol 1 0.500231641268019 1 0.999536717463963 hm5C_site_31044 DeepMRMD:1;iRNA_m5C:0.999536717463963 31045 chr5 122154677 122154677 1 + G T OV 122154694 + 122154674 122154714 41 TCAGAACTACTTAGTGACTACATTCGTCTTATTGCTGCAGT TCATAACTACTTAGTGACTACATTCGTCTTATTGCTGCAGT < 41bp 1 0.0482855468310524 1 0.0803884565830231 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122154694 chr5:122154677 stopgain 1.000 1 4 hm5C_associated_SNPs_30901 0 0 1 0 1 Ribosome 1 0.500231648066042 1 0.999536703867916 hm5C_site_31045 DeepMRMD:1;iRNA_m5C:0.999536703867916 31046 chr18 34349247 34349247 1 + T C OV 34349255 + 34349235 34349275 41 TAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCA TAGTTCCTGGACCATGGGAACTGATGACTCGCCCAATGTCA < 41bp 1 0.143002552688334 1 0.0762163400650024 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34349255 chr18:34349247 synonymous SNV . 0 13 hm5C_associated_SNPs_30902 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31046 DeepMRMD:1;iRNA_m5C:0.999536712157815 31047 chr12 56214111 56214111 1 + C T OV 56214120 + 56214100 56214140 41 CAGCCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAG CAGCCTCATTGTTAAGTGTACTGCTGCCGAAGTTGCCCCAG < 41bp 1 0.66383544122111 1 0.168861329555511 experiment 0.672329117557779 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human other chr12:56214120 chr12:56214111 synonymous SNV . 0 12 hm5C_associated_SNPs_30903 0 0 1 0 1 Ribosome 1 0.500231643921106 1 0.999536712157788 hm5C_site_31047 DeepMRMD:1;iRNA_m5C:0.999536712157788 31048 chr12 56214111 56214111 1 + C T OV 56214123 + 56214103 56214143 41 CCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAGTTC CCTCATTGTTAAGTGTACTGCTGCCGAAGTTGCCCCAGTTC < 41bp 1 0.601419110063823 1 0.206924140453339 experiment 0.797161779872355 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human other chr12:56214123 chr12:56214111 synonymous SNV . 0 9 hm5C_associated_SNPs_30904 0 0 1 0 1 Ribosome 1 0.500231643880375 1 0.999536712239251 hm5C_site_31048 DeepMRMD:1;iRNA_m5C:0.999536712239251 31049 chr6 42975966 42975966 1 + C T OV 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACGAGACGGAGCATCACAATGGGATTGCTGAG < 41bp 1 0.286163938499647 1 0.0279779732227325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975966 synonymous SNV . 0 29 hm5C_associated_SNPs_30905 0 0 1 0 2 Ribosome 1 0.50023165358327 1 0.999536692833459 hm5C_site_31049 DeepMRMD:1;iRNA_m5C:0.999536692833459 31050 chr17 39974695 39974695 1 + G T OV 39974691 + 39974671 39974711 41 TCTGGTTGGCTGATCAAGGGCATGGACCAGGGGCTGCTGGG TCTGGTTGGCTGATCAAGGGCATGTACCAGGGGCTGCTGGG < 41bp 1 0.209977661456764 1 0.111507475376129 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974691 chr17:39974695 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_30906 0 0 1 0 2 Nucleus 1 0.500231643708958 1 0.999536712582084 hm5C_site_31050 DeepMRMD:1;iRNA_m5C:0.999536712582084 31051 chr17 39974695 39974695 1 + G T OV 39974704 + 39974684 39974724 41 TCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGTCCTGGA TCAAGGGCATGTACCAGGGGCTGCTGGGCATGTGTCCTGGA < 41bp 1 0.222916578001124 1 0.0371689796447754 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974704 chr17:39974695 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_30908 0 0 1 0 2 Nucleus 1 0.500231626899579 1 0.999536746200842 hm5C_site_31051 DeepMRMD:1;iRNA_m5C:0.999536746200842 31052 chr17 39974695 39974695 1 + G T OV 39974712 + 39974692 39974732 41 ATGGACCAGGGGCTGCTGGGCATGTGTCCTGGAGAGAGAAG ATGTACCAGGGGCTGCTGGGCATGTGTCCTGGAGAGAGAAG < 41bp 1 0.235546002277816 1 0.287831604480743 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974712 chr17:39974695 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_30909 0 0 1 0 2 Nucleus 1 0.500231644225026 1 0.999536711549948 hm5C_site_31052 DeepMRMD:1;iRNA_m5C:0.999536711549948 31053 chrX 37955473 37955473 1 + G A OV 37955484 + 37955464 37955504 41 TCTGTCCCTGGGGCTTTAGACAAGGTAAGTTGGATGTGGAA TCTGTCCCTAGGGCTTTAGACAAGGTAAGTTGGATGTGGAA < 41bp 1 0.691515826987708 1 0.751859843730927 experiment 0.616968346024585 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37955484 chrX:37955473 nonsynonymous SNV 0.997 2 10 hm5C_associated_SNPs_30910 0 0 0 0 2 cytosol 1 0.500231643921092 0.496280312538146 0.999536712157815 hm5C_site_31053 DeepMRMD:0.496280312538146;iRNA_m5C:0.999536712157815 31054 chr16 84035482 84035482 1 + C T OV 84035478 + 84035458 84035498 41 TTCCGGCACGTCAAGGTGGACACACTGAGCCAGCCTGAGGC TTCCGGCACGTCAAGGTGGACACATTGAGCCAGCCTGAGGC < 41bp 1 0.41481834686509 1 0.183225035667419 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84035478 chr16:84035482 synonymous SNV . 0 25 hm5C_associated_SNPs_30911 0 0 0 0 2 exosome 1 0.500231643920363 1 0.999536712159273 hm5C_site_31054 DeepMRMD:1;iRNA_m5C:0.999536712159273 31055 chr2 97464908 97464908 1 + G A OV 97464916 + 97464896 97464936 41 AGTACTACGCCCGCCATTACCTGTACACCCGAAATAAGCCG AGTACTACGCCCACCATTACCTGTACACCCGAAATAAGCCG < 41bp 1 0.531198078321704 1 0.746360063552856 experiment 0.937603843356592 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97464916 chr2:97464908 nonsynonymous SNV 0.614 0 13 hm5C_associated_SNPs_30912 0 0 1 0 1 chromatin 1 0.500231643942378 0.507279872894288 0.999536712115244 hm5C_site_31055 DeepMRMD:0.507279872894288;iRNA_m5C:0.999536712115244 31056 chr19 4323380 4323380 1 + G C OV 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCCCGCACCAAACAACTGCTGCACACTTTCAAGACCAGG < 41bp 1 0.348369068626133 1 0.218527227640152 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323380 nonsynonymous SNV 0.581 0 18 hm5C_associated_SNPs_30913 0 0 1 0 2 cytosol 1 0.500214457103197 1 0.999571085793606 hm5C_site_31056 DeepMRMD:1;iRNA_m5C:0.999571085793606 31057 chr16 27761031 27761031 1 + C T OV 27761012 + 27760992 27761032 41 GTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG GTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACATG < 41bp 1 0.549592671687004 1 0.881043374538422 experiment 0.900814656625993 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27761012 chr16:27761031 nonsynonymous SNV 0.010 0 40 hm5C_associated_SNPs_30914 0 0 0 0 0 Nucleus 1 0.500231643921862 0.237913250923156 0.999536712156275 hm5C_site_31057 DeepMRMD:0.237913250923156;iRNA_m5C:0.999536712156275 31058 chr2 232573422 232573422 1 + A G OV 232573427 + 232573407 232573447 41 GTGCCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCG GTGCCCCACCATGTCGGACGCAGCCGTAGACACCAGCTCCG < 41bp 1 0.666741442809157 1 0.3267542719841 experiment 0.666517114381687 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514;ENSG00000187514 exonic;splicing Human other chr2:232573427 chr2:232573422 synonymous SNV 0.998 0 16 hm5C_associated_SNPs_30915 0 0 1 0 1 Ribosome 1 0.500229632567872 1 0.999540734864257 hm5C_site_31058 DeepMRMD:1;iRNA_m5C:0.999540734864257 31059 chr2 232573422 232573422 1 + A G OV 232573430 + 232573410 232573450 41 CCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCGAAA CCCCACCATGTCGGACGCAGCCGTAGACACCAGCTCCGAAA < 41bp 1 0.601209971299281 1 0.270610332489014 experiment 0.797580057401439 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514;ENSG00000187514 exonic;splicing Human other chr2:232573430 chr2:232573422 synonymous SNV 0.998 0 13 hm5C_associated_SNPs_30916 0 0 1 0 1 Ribosome 1 0.500231643920909 1 0.999536712158182 hm5C_site_31059 DeepMRMD:1;iRNA_m5C:0.999536712158182 31060 chr15 41859592 41859592 1 + C G OV 41859602 + 41859582 41859622 41 GAAGTCCTGGCTGTTGTGGTCCCTGTGCCCCCCTTTACCTG GAAGTCCTGGGTGTTGTGGTCCCTGTGCCCCCCTTTACCTG < 41bp 1 0.274127304844411 1 0.0534572303295135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41859602 chr15:41859592 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_30918 0 0 0 0 1 Ribosome 1 0.500231645179528 1 0.999536709640944 hm5C_site_31060 DeepMRMD:1;iRNA_m5C:0.999536709640944 31061 chr3 107524253 107524253 1 + G T OV 107524266 + 107524246 107524286 41 ATGGACAGCCAAAAGAAATGCCGCAGGCTCCTGTACTTATT ATGGACATCCAAAAGAAATGCCGCAGGCTCCTGTACTTATT < 41bp 1 0.471517580301031 1 0.236049383878708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BBX ENSG00000114439 CDS Human protein_coding chr3:107524266 chr3:107524253 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_30919 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31061 DeepMRMD:1;iRNA_m5C:0.999536712157815 31062 chr1 16199349 16199349 1 + G T OV 16199355 + 16199335 16199375 41 AATTCTTCCCAAGAGGGGATCTGAAGGAGGAGTGGCTGCCT AATTCTTCCCAAGATGGGATCTGAAGGAGGAGTGGCTGCCT < 41bp 1 0.436874254361881 1 0.849797070026398 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16199355 chr1:16199349 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_30920 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.300405859947204 0.999536712157816 hm5C_site_31062 DeepMRMD:0.300405859947204;iRNA_m5C:0.999536712157816 31063 chr3 150289799 150289799 1 + G T OV 150289790 + 150289770 150289810 41 AGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATG AGTTTGGAATTCTAGTTCTACTGAGTTTTTTGCTGTATATG < 41bp 1 0.526901962200554 1 0.1360764503479 experiment 0.946196075598892 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF2A ENSG00000144895 CDS Human protein_coding chr3:150289790 chr3:150289799 nonsynonymous SNV 0.999 4 30 hm5C_associated_SNPs_30921 0 0 1 0 1 Cytosol 1 0.50023171181927 1 0.99953657636146 hm5C_site_31063 DeepMRMD:1;iRNA_m5C:0.99953657636146 31064 chr2 46611660 46611660 1 + G C OV 46611654 + 46611634 46611674 41 AACCCTTCTTTCAGGCATGGCAAGCCGGCTGCTCGGGCCCT AACCCTTCTTTCAGGCATGGCAAGCCCGCTGCTCGGGCCCT < 41bp 1 0.174331303349905 1 0.319557785987854 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46611654 chr2:46611660 nonsynonymous SNV 0.958 2 27 hm5C_associated_SNPs_30922 0 0 1 0 1 Cytosol 1 0.500231643919306 1 0.999536712161389 hm5C_site_31064 DeepMRMD:1;iRNA_m5C:0.999536712161389 31065 chr2 46611661 46611661 1 + G C OV 46611654 + 46611634 46611674 41 AACCCTTCTTTCAGGCATGGCAAGCCGGCTGCTCGGGCCCT AACCCTTCTTTCAGGCATGGCAAGCCGCCTGCTCGGGCCCT < 41bp 1 0.19054115370828 1 0.490718930959702 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46611654 chr2:46611661 synonymous SNV . 0 28 hm5C_associated_SNPs_30923 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31065 DeepMRMD:1;iRNA_m5C:0.999536712157815 31066 chr16 2489417 2489417 1 + A T OV 2489428 + 2489408 2489448 41 GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGCGACAG GGATGTCTGTCCAGCTCCTACCTCCTCTGGGAAAGCGACAG < 41bp 1 0.033132976713371 1 0.0552080273628235 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNF ENSG00000162063 CDS Human protein_coding chr16:2489428 chr16:2489417 nonsynonymous SNV 0.134 0 10 hm5C_associated_SNPs_30924 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31066 DeepMRMD:1;iRNA_m5C:0.999536712157815 31067 chr7 150769178 150769178 1 + G A OV 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTAATCTCACT < 41bp 1 0.0611558556290791 1 0.0546144843101501 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769178 synonymous SNV . 0 33 hm5C_associated_SNPs_30925 0 0 1 0 1 Ribosome 1 0.500231643921598 1 0.999536712156805 hm5C_site_31067 DeepMRMD:1;iRNA_m5C:0.999536712156805 31068 chr5 140764668 140764668 1 + C A OV 140764677 + 140764657 140764697 41 GGCTTGGCGAACGTGCCCACCTCGCACTTTGTGGGCATGGA GGCTTGGCGAAAGTGCCCACCTCGCACTTTGTGGGCATGGA < 41bp 1 0.17048825112726 1 0.123210966587067 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCDHGA7 ENSG00000253537 CDS Human protein_coding chr5:140764677 chr5:140764668 nonsynonymous SNV 0.000 0 12 hm5C_associated_SNPs_30926 0 0 0 0 0 exosome 1 0.500231644464366 1 0.999536711071269 hm5C_site_31068 DeepMRMD:1;iRNA_m5C:0.999536711071269 31069 chr2 36739482 36739482 1 + C T OV 36739473 + 36739453 36739493 41 AAATGTCCAGAGCTCTCATGCAGTAAGATCTGCCCCTTGGG AAATGTCCAGAGCTCTCATGCAGTAAGATTTGCCCCTTGGG < 41bp 1 0.409825454026642 1 0.326364398002625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36739473 chr2:36739482 synonymous SNV . 0 30 hm5C_associated_SNPs_30927 0 0 1 0 2 Nucleus 1 0.500231643921709 1 0.999536712156582 hm5C_site_31069 DeepMRMD:1;iRNA_m5C:0.999536712156582 31070 chr16 70163007 70163007 1 + A G OV 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTTGCCCTGGCAGGTGCTGCCTCCCAAAATGGTGAGCAGGT < 41bp 1 0.240007350092015 1 0.3267742395401 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70163007 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_30928 0 0 0 0 1 Nucleus 1 0.500231643921586 1 0.999536712156829 hm5C_site_31070 DeepMRMD:1;iRNA_m5C:0.999536712156829 31071 chr18 29116349 29116349 1 + A T OV 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCCGTCATTGACAATCCACCTGGCATGGCAGAAAAA < 41bp 1 0.143457195902136 1 0.246951103210449 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116349 nonsynonymous SNV 0.452 1 20 hm5C_associated_SNPs_30929 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643943029 1 0.999536712113942 hm5C_site_31071 DeepMRMD:1;iRNA_m5C:0.999536712113942 31072 chr18 29116349 29116349 1 + A T OV 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCCGTCATTGACAATCCACCTGGCATGGCAGAAAAATGGA < 41bp 1 0.433585336990598 1 0.104413658380508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116349 nonsynonymous SNV 0.452 1 16 hm5C_associated_SNPs_30930 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31072 DeepMRMD:1;iRNA_m5C:0.999536712157815 31073 chr18 29116349 29116349 1 + A T OV 29116363 + 29116343 29116383 41 TGACAAACCACCTGGCATGGCAGAAAAATGGAAAATAGCAC TGACAATCCACCTGGCATGGCAGAAAAATGGAAAATAGCAC < 41bp 1 0.486737660916388 1 0.313675701618195 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116363 chr18:29116349 nonsynonymous SNV 0.452 1 7 hm5C_associated_SNPs_30931 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31073 DeepMRMD:1;iRNA_m5C:0.999536712157815 31074 chr19 13049527 13049527 1 + C T OV 13049544 + 13049524 13049564 41 CTCCTCGGCCTGGCCGTCGCCGAGCCTGCCGTCTACTTCAA CTCTTCGGCCTGGCCGTCGCCGAGCCTGCCGTCTACTTCAA < 41bp 1 0.668092368674405 1 0.693444848060608 experiment 0.66381526265119 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049544 chr19:13049527 nonsynonymous SNV 0.975 0 4 hm5C_associated_SNPs_30932 0 0 1 0 1 Ribosome 1 0.500231643921092 0.613110303878784 0.999536712157815 hm5C_site_31074 DeepMRMD:0.613110303878784;iRNA_m5C:0.999536712157815 31075 chr5 135369461 135369461 1 + G T OV 135369452 + 135369432 135369472 41 TCTGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCA TCTGCTGCTTTTGTTTTCAGCCCCAACGTTTGTGCTGTGCA < 41bp 1 0.150858079290026 1 0.328737080097198 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369452 chr5:135369461 synonymous SNV . 0 30 hm5C_associated_SNPs_30933 0 0 1 0 2 Endoplasmic reticulum 1 0.500231808911038 1 0.999536382177924 hm5C_site_31075 DeepMRMD:1;iRNA_m5C:0.999536382177924 31076 chr5 135369461 135369461 1 + G T OV 135369453 + 135369433 135369473 41 CTGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAG CTGCTGCTTTTGTTTTCAGCCCCAACGTTTGTGCTGTGCAG < 41bp 1 0.179815909882583 1 0.101566195487976 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369453 chr5:135369461 synonymous SNV . 0 29 hm5C_associated_SNPs_30934 0 0 1 0 2 Endoplasmic reticulum 1 0.500231856316455 1 0.999536287367089 hm5C_site_31076 DeepMRMD:1;iRNA_m5C:0.999536287367089 31077 chr5 135369461 135369461 1 + G T OV 135369454 + 135369434 135369474 41 TGCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAGA TGCTGCTTTTGTTTTCAGCCCCAACGTTTGTGCTGTGCAGA < 41bp 1 0.0231095399921386 1 0.121606141328812 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369454 chr5:135369461 synonymous SNV . 0 28 hm5C_associated_SNPs_30935 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644947919 1 0.999536710104162 hm5C_site_31077 DeepMRMD:1;iRNA_m5C:0.999536710104162 31078 chr5 135369461 135369461 1 + G T OV 135369455 + 135369435 135369475 41 GCTGCTTTTGTTTTCAGCCCCAACGTGTGTGCTGTGCAGAA GCTGCTTTTGTTTTCAGCCCCAACGTTTGTGCTGTGCAGAA < 41bp 1 0.302309874412558 1 0.11550384759903 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFBI ENSG00000120708 CDS Human protein_coding chr5:135369455 chr5:135369461 synonymous SNV . 0 27 hm5C_associated_SNPs_30936 0 0 1 0 2 Endoplasmic reticulum 1 0.500231639023715 1 0.999536721952571 hm5C_site_31078 DeepMRMD:1;iRNA_m5C:0.999536721952571 31079 chr3 9859419 9859419 1 + G T OV 9859427 + 9859407 9859447 41 TGCCTGGGGGCTGAGGATGACAAAAAAGCCTTCATAGGTAA TGCCTGGGGGCTTAGGATGACAAAAAAGCCTTCATAGGTAA < 41bp 1 0.534851978567861 1 0.559752702713013 experiment 0.930296042864277 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9859427 chr3:9859419 stopgain 1.000 0 13 hm5C_associated_SNPs_30937 0 0 1 0 1 unknown 1 0.500231643153617 0.880494594573974 0.999536713692766 hm5C_site_31079 DeepMRMD:0.880494594573974;iRNA_m5C:0.999536713692766 31080 chr5 147819268 147819268 1 + G T OV 147819249 + 147819229 147819269 41 AGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGT AGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTTT < 41bp 1 0.24677964792758 1 0.035656750202179 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819249 chr5:147819268 nonsynonymous SNV 0.997 2 40 hm5C_associated_SNPs_30938 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31080 DeepMRMD:1;iRNA_m5C:0.999536712157815 31081 chr5 147819268 147819268 1 + G T OV 147819251 + 147819231 147819271 41 CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTAT CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTTTAT < 41bp 1 0.130836588733346 1 0.0277892649173737 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819251 chr5:147819268 nonsynonymous SNV 0.997 2 38 hm5C_associated_SNPs_30939 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31081 DeepMRMD:1;iRNA_m5C:0.999536712157815 31082 chr5 147819268 147819268 1 + G T OV 147819256 + 147819236 147819276 41 GCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCC GCTATTTAGTGGTCCCTACCCCTATCACATCTTTATTATCC < 41bp 1 0.08463206737825 1 0.089014858007431 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819256 chr5:147819268 nonsynonymous SNV 0.997 2 33 hm5C_associated_SNPs_30940 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31082 DeepMRMD:1;iRNA_m5C:0.999536712157815 31083 chr5 147819268 147819268 1 + G T OV 147819257 + 147819237 147819277 41 CTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCA CTATTTAGTGGTCCCTACCCCTATCACATCTTTATTATCCA < 41bp 1 0.0832039829415712 1 0.340149104595184 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819257 chr5:147819268 nonsynonymous SNV 0.997 2 32 hm5C_associated_SNPs_30941 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_31083 DeepMRMD:1;iRNA_m5C:0.999536712157815 31084 chr10 24817002 24817002 1 + C A OV 24816988 + 24816968 24817008 41 CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTG CAATACCAAATCTGGAGATGCCGCCAGCCACAGGACCACTG < 41bp 1 0.125301997146103 1 0.167505383491516 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816988 chr10:24817002 synonymous SNV . 0 35 hm5C_associated_SNPs_30942 0 0 1 0 1 Nucleus 1 0.500226835948604 1 0.999546328102792 hm5C_site_31084 DeepMRMD:1;iRNA_m5C:0.999546328102792 31085 chr10 24817002 24817002 1 + C A OV 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAAATCTGGAGATGCCGCCAGCCACAGGACCACTGCCAA < 41bp 1 0.229444099854574 1 0.701178073883057 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24817002 synonymous SNV . 0 31 hm5C_associated_SNPs_30943 0 0 1 0 1 Nucleus 1 0.500231643927022 0.597643852233886 0.999536712145956 hm5C_site_31085 DeepMRMD:0.597643852233886;iRNA_m5C:0.999536712145956 31086 chrX 48759276 48759276 1 + C A OV 48759267 + 48759247 48759287 41 TCCTGGCTCTCCCCACATGACCCCAACTCCGTGGTTACCAA TCCTGGCTCTCCCCACATGACCCCAACTCAGTGGTTACCAA < 41bp 1 0.684284229293679 1 0.0465203523635864 experiment 0.631431541412642 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759267 chrX:48759276 synonymous SNV . 0 30 hm5C_associated_SNPs_30944 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31086 DeepMRMD:1;iRNA_m5C:0.999536712157815 31087 chr1 39751390 39751390 1 + C T OV 39751378 + 39751358 39751398 41 TCAGGCAGCTGCAGGTGGATCTCCAGATCCTGCGGGATGAG TCAGGCAGCTGCAGGTGGATCTCCAGATCCTGTGGGATGAG < 41bp 1 0.478065328560372 1 0.890841662883759 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39751378 chr1:39751390 nonsynonymous SNV 0.995 4 33 hm5C_associated_SNPs_30945 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921272 0.218316674232482 0.999536712157456 hm5C_site_31087 DeepMRMD:0.218316674232482;iRNA_m5C:0.999536712157456 31088 chr11 994220 994220 1 + C G OV 994214 + 994194 994234 41 TGTGGACGTGAACGGGGGTCCTGAGCCTGCCCCAGCCAGTA TGTGGACGTGAACGGGGGTCCTGAGCGTGCCCCAGCCAGTA < 41bp 1 0.522866514941424 1 0.270213663578033 experiment 0.954266970117153 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:994214 chr11:994220 nonsynonymous SNV 0.006 1 27 hm5C_associated_SNPs_30946 0 0 1 0 1 Nucleus 1 0.50023164392247 1 0.99953671215506 hm5C_site_31088 DeepMRMD:1;iRNA_m5C:0.99953671215506 31089 chr3 62189578 62189578 1 + C T OV 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCGTGGGGACCGATTTTCTGAAGACAGCAGA < 41bp 1 0.109954461718893 1 0.110505372285843 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189578 synonymous SNV . 0 14 hm5C_associated_SNPs_30947 0 0 0 0 1 Ribosome 1 0.500231643921088 1 0.999536712157824 hm5C_site_31089 DeepMRMD:1;iRNA_m5C:0.999536712157824 31090 chr10 105048223 105048223 1 + A C OV 105048230 + 105048210 105048250 41 ACCTAGAATCCTCAGTGCTACAACCTCCAAAGTCTCATCCA ACCTAGAATCCTCCGTGCTACAACCTCCAAAGTCTCATCCA < 41bp 1 0.327359217006868 1 0.117400020360947 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INA ENSG00000148798 CDS Human protein_coding chr10:105048230 chr10:105048223 nonsynonymous SNV 0.947 3 14 hm5C_associated_SNPs_30948 0 0 0 0 0 exosome 1 0.500231643906733 1 0.999536712186534 hm5C_site_31090 DeepMRMD:1;iRNA_m5C:0.999536712186534 31091 chr19 54711372 54711372 1 + C A OV 54711362 + 54711342 54711382 41 CGCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAG CGCTCTCCCTACGGGGGTGGCCGCCCGGGCAGCGTGAAGAG < 41bp 1 0.366316675425542 1 0.130010962486267 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711362 chr19:54711372 nonsynonymous SNV 0.701 3 31 hm5C_associated_SNPs_30949 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31091 DeepMRMD:1;iRNA_m5C:0.999536712157815 31092 chr19 54711372 54711372 1 + C A OV 54711363 + 54711343 54711383 41 GCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAGG GCTCTCCCTACGGGGGTGGCCGCCCGGGCAGCGTGAAGAGG < 41bp 1 0.574909722583831 1 0.269537329673767 experiment 0.850180554832338 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS9 ENSG00000170889 CDS Human protein_coding chr19:54711363 chr19:54711372 nonsynonymous SNV 0.701 3 30 hm5C_associated_SNPs_30950 0 0 1 0 0 Ribosome 1 0.500231643921074 1 0.999536712157852 hm5C_site_31092 DeepMRMD:1;iRNA_m5C:0.999536712157852 31093 chr11 67079285 67079285 1 + C T OV 67079295 + 67079275 67079315 41 CCCTGCATTTCCTCTACGCCCAGGTTCCGGAAGGTGGTGAG CCCTGCATTTTCTCTACGCCCAGGTTCCGGAAGGTGGTGAG < 41bp 1 0.622190534598198 1 0.504424333572388 experiment 0.755618930803604 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67079295 chr11:67079285 nonsynonymous SNV 0.007 1 11 hm5C_associated_SNPs_30951 0 0 0 0 0 nucleus 1 0.500231643921092 0.991151332855224 0.999536712157815 hm5C_site_31093 DeepMRMD:0.991151332855224;iRNA_m5C:0.999536712157815 31094 chr17 40817779 40817779 1 + G C OV 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATCGGCCTCATCGCCTCCCTCATTCCCACCCCACGGCTC < 41bp 1 0.38445258451953 1 0.0462374687194824 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817779 synonymous SNV . 0 20 hm5C_associated_SNPs_30952 0 0 0 0 2 Cytosol 1 0.500231642578396 1 0.999536714843209 hm5C_site_31094 DeepMRMD:1;iRNA_m5C:0.999536714843209 31095 chrX 107930810 107930810 1 + C T OV 107930815 + 107930795 107930835 41 GGATTTCTTATTACACGCCACAGCCAGACAACGGATGCACC GGATTTCTTATTACATGCCACAGCCAGACAACGGATGCACC < 41bp 1 0.073821371934543 1 0.173624247312546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107930815 chrX:107930810 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_30953 0 0 0 0 1 Ribosome 1 0.500231643840537 1 0.999536712318926 hm5C_site_31095 DeepMRMD:1;iRNA_m5C:0.999536712318926 31096 chr19 18966734 18966734 1 + G A OV 18966735 + 18966715 18966755 41 TGCCCCAATGGTGTTGCAGGCCGGTGCTGGTGTGTGCTCCG TGCCCCAATGGTGTTGCAGACCGGTGCTGGTGTGTGCTCCG < 41bp 1 0.36107648923401 1 0.337171137332916 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966735 chr19:18966734 synonymous SNV . 0 20 hm5C_associated_SNPs_30954 0 0 1 0 1 Nucleus 1 0.500243385012919 1 0.999513229974162 hm5C_site_31096 DeepMRMD:1;iRNA_m5C:0.999513229974162 31097 chr3 40553904 40553904 1 + A T OV 40553898 + 40553878 40553918 41 TTTCTCCCTGGGCAGCATTCCCATTCACCACGCCTGTTCTG TTTCTCCCTGGGCAGCATTCCCATTCTCCACGCCTGTTCTG < 41bp 1 0.12455900461437 1 0.0795082449913025 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553898 chr3:40553904 nonsynonymous SNV 0.459 0 27 hm5C_associated_SNPs_30955 0 0 0 0 1 cytosol 1 0.500231643677981 1 0.999536712644038 hm5C_site_31097 DeepMRMD:1;iRNA_m5C:0.999536712644038 31098 chr14 61285485 61285485 1 + G C OV 61285479 + 61285459 61285499 41 TTGCTCTGCTTTTGGCTCAGCATAAAGATAGATCTACCCAA TTGCTCTGCTTTTGGCTCAGCATAAACATAGATCTACCCAA < 41bp 1 0.32888527514544 1 0.169232934713364 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61285479 chr14:61285485 nonsynonymous SNV 0.954 1 27 hm5C_associated_SNPs_30956 0 0 1 0 2 Ribosome 1 0.500231556603959 1 0.999536886792082 hm5C_site_31098 DeepMRMD:1;iRNA_m5C:0.999536886792082 31099 chr19 36593926 36593926 1 + G A OV 36593911 + 36593891 36593931 41 TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGCGGAAGC TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGCAGAAGC < 41bp 1 0.288642916372472 1 0.172226279973984 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593911 chr19:36593926 nonsynonymous SNV 0.017 1 36 hm5C_associated_SNPs_30957 0 0 1 0 2 Nucleus 1 0.500231644196368 1 0.999536711607264 hm5C_site_31099 DeepMRMD:1;iRNA_m5C:0.999536711607264 31100 chr19 36593926 36593926 1 + G A OV 36593920 + 36593900 36593940 41 CAGAGGTCAAGCTCATGGACCGAGGCGGAAGCCAGCCCAGA CAGAGGTCAAGCTCATGGACCGAGGCAGAAGCCAGCCCAGA < 41bp 1 0.446477514852183 1 0.86842006444931 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593920 chr19:36593926 nonsynonymous SNV 0.017 1 27 hm5C_associated_SNPs_30958 0 0 1 0 2 Nucleus 1 0.500231702978407 0.26315987110138 0.999536594043187 hm5C_site_31100 DeepMRMD:0.26315987110138;iRNA_m5C:0.999536594043187 31101 chr1 162745452 162745452 1 + C A OV 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTATTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC < 41bp 1 0.264032924390654 1 0.109387457370758 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745452 nonsynonymous SNV 1.000 5 4 hm5C_associated_SNPs_30959 0 0 0 0 1 nucleolus 1 0.500231643836085 1 0.999536712327829 hm5C_site_31101 DeepMRMD:1;iRNA_m5C:0.999536712327829 31102 chr22 45958907 45958907 1 + C T OV 45958896 + 45958876 45958916 41 CACCAACATCCAAGCGCCCGCGGTGGTTTTCCGCATGGGCC CACCAACATCCAAGCGCCCGCGGTGGTTTTCTGCATGGGCC < 41bp 1 0.436405723212319 1 0.4760382771492 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45958896 chr22:45958907 nonsynonymous SNV 0.999 3 32 hm5C_associated_SNPs_30960 0 0 1 0 0 cytosol 1 0.50023164421843 1 0.99953671156314 hm5C_site_31102 DeepMRMD:1;iRNA_m5C:0.99953671156314 31103 chr6 31602076 31602076 1 + C A OV 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTAAG < 41bp 1 0.469263608927693 1 0.291495233774185 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602076 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_30961 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31103 DeepMRMD:1;iRNA_m5C:0.999536712157815 31104 chr6 31602076 31602076 1 + C A OV 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTAAGG < 41bp 1 0.504686154582552 1 0.852639973163605 experiment 0.990627690834895 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602076 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_30962 0 0 1 0 2 Ribosome 1 0.500231643921092 0.29472005367279 0.999536712157815 hm5C_site_31104 DeepMRMD:0.29472005367279;iRNA_m5C:0.999536712157815 31105 chr6 31602076 31602076 1 + C A OV 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTAAGGCAGAGTC < 41bp 1 0.247489713136818 1 0.454886317253113 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602076 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_30963 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31105 DeepMRMD:1;iRNA_m5C:0.999536712157815 31106 chr6 31602076 31602076 1 + C A OV 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGA < 41bp 1 0.336524479103029 1 0.0827689170837402 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602076 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_30964 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31106 DeepMRMD:1;iRNA_m5C:0.999536712157815 31107 chr6 31602076 31602076 1 + C A OV 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGAT < 41bp 1 0.262771829147492 1 0.181120455265045 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602076 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_30965 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31107 DeepMRMD:1;iRNA_m5C:0.999536712157815 31108 chr6 31602076 31602076 1 + C A OV 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGATA < 41bp 1 0.326431991784121 1 0.16384094953537 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602076 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_30966 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31108 DeepMRMD:1;iRNA_m5C:0.999536712157815 31109 chr6 31602076 31602076 1 + C A OV 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTAAGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.431297428685909 1 0.701267123222351 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602076 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_30967 0 0 1 0 2 Ribosome 1 0.500231643921092 0.597465753555298 0.999536712157815 hm5C_site_31109 DeepMRMD:0.597465753555298;iRNA_m5C:0.999536712157815 31110 chr7 128486906 128486906 1 + T G OV 128486898 + 128486878 128486918 41 GGTAGCTGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA GGTAGCTGCACCGTGGAGTACATCCCCTGCACTCCTGGAGA < 41bp 1 0.0481506472414595 1 0.0455867946147919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486898 chr7:128486906 nonsynonymous SNV 0.996 4 29 hm5C_associated_SNPs_30968 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31110 DeepMRMD:1;iRNA_m5C:0.999536712157815 31111 chr15 64429075 64429075 1 + G A OV 64429070 + 64429050 64429090 41 TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAAGAACCACG TGTCTCCTAGAAAGAGAAATCCAAGAACTTCAAGAACCACG < 41bp 1 0.115516452442719 1 0.353373736143112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64429070 chr15:64429075 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_30969 0 0 1 0 2 Ribosome 1 0.500231655106503 1 0.999536689786994 hm5C_site_31111 DeepMRMD:1;iRNA_m5C:0.999536689786994 31112 chr19 39944005 39944005 1 + G T OV 39944021 + 39944001 39944041 41 CGAAGAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAG CGAATAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAG < 41bp 1 0.579219037987388 1 0.84163111448288 experiment 0.841561924025224 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944021 chr19:39944005 stopgain 0.945 0 5 hm5C_associated_SNPs_30970 0 0 1 0 1 Nucleus 1 0.50023164378466 0.31673777103424 0.99953671243068 hm5C_site_31112 DeepMRMD:0.31673777103424;iRNA_m5C:0.99953671243068 31113 chr19 39944005 39944005 1 + G T OV 39944025 + 39944005 39944045 41 GAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC TAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC < 41bp 1 0.320803606873993 1 0.413842231035233 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944025 chr19:39944005 stopgain 0.945 0 1 hm5C_associated_SNPs_30971 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31113 DeepMRMD:1;iRNA_m5C:0.999536712157815 31114 chr6 31595940 31595940 1 + G T OV 31595942 + 31595922 31595962 41 TACTCCTACTCCAGGTGTGGCTGCGGCTCCCACTCTGGTGA TACTCCTACTCCAGGTGTTGCTGCGGCTCCCACTCTGGTGA < 41bp 1 0.593023083565708 1 0.223287135362625 experiment 0.813953832868585 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31595942 chr6:31595940 synonymous SNV . 0 19 hm5C_associated_SNPs_30972 0 0 1 0 1 Ribosome 1 0.500231643881719 1 0.999536712236562 hm5C_site_31114 DeepMRMD:1;iRNA_m5C:0.999536712236562 31115 chr16 57685246 57685246 1 + G T OV 57685240 + 57685220 57685260 41 TCGAGAACTCCGAAGAGGCCCTCACAGTCCATGCCCCTTTC TCGAGAACTCCGAAGAGGCCCTCACATTCCATGCCCCTTTC < 41bp 1 0.344945891176713 1 0.048089325428009 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57685240 chr16:57685246 nonsynonymous SNV 0.022 1 27 hm5C_associated_SNPs_30973 0 0 1 0 1 Nucleus 1 0.500231643923927 1 0.999536712152145 hm5C_site_31115 DeepMRMD:1;iRNA_m5C:0.999536712152145 31116 chr8 70551056 70551056 1 + T C OV 70551038 + 70551018 70551058 41 CACGTACAACTAATGGAGCTCAGAAGCTGTCAAGGATATAA CACGTACAACTAATGGAGCTCAGAAGCTGTCAAGGATACAA < 41bp 1 0.534507550301273 1 0.39259672164917 experiment 0.930984899397455 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SULF1 ENSG00000137573 CDS Human protein_coding chr8:70551038 chr8:70551056 synonymous SNV . 0 39 hm5C_associated_SNPs_30974 0 0 0 0 2 Nucleus 1 0.500231645092474 1 0.999536709815052 hm5C_site_31116 DeepMRMD:1;iRNA_m5C:0.999536709815052 31117 chr15 91448687 91448687 1 + G A OV 91448697 + 91448677 91448717 41 CCATCTCCCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG CCATCTCCCCACAGGACTGCCAGTTTGCTTTGGGGGGCCGG < 41bp 1 0.223518316311541 1 0.116249591112137 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91448697 chr15:91448687 synonymous SNV . 0 11 hm5C_associated_SNPs_30976 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31117 DeepMRMD:1;iRNA_m5C:0.999536712157815 31118 chr1 28099860 28099860 1 + C T OV 28099858 + 28099838 28099878 41 ACATGTACCGGAACCCGGGGCCCTCGGGGCCCCAGCTCCGG ACATGTACCGGAACCCGGGGCCTTCGGGGCCCCAGCTCCGG < 41bp 1 0.0470299279662676 1 0.129690378904343 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STX12 ENSG00000117758 CDS Human protein_coding chr1:28099858 chr1:28099860 synonymous SNV . 0 23 hm5C_associated_SNPs_30977 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_31118 DeepMRMD:1;iRNA_m5C:0.999536712157812 31119 chr1 28099860 28099860 1 + C T OV 28099859 + 28099839 28099879 41 CATGTACCGGAACCCGGGGCCCTCGGGGCCCCAGCTCCGGG CATGTACCGGAACCCGGGGCCTTCGGGGCCCCAGCTCCGGG < 41bp 1 0.51206577803584 1 0.379286348819733 experiment 0.975868443928321 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STX12 ENSG00000117758 CDS Human protein_coding chr1:28099859 chr1:28099860 synonymous SNV . 0 22 hm5C_associated_SNPs_30978 0 0 1 0 1 Ribosome 1 0.500231643921205 1 0.999536712157591 hm5C_site_31119 DeepMRMD:1;iRNA_m5C:0.999536712157591 31120 chr1 28099860 28099860 1 + C T OV 28099867 + 28099847 28099887 41 GGAACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGC GGAACCCGGGGCCTTCGGGGCCCCAGCTCCGGGACTTCAGC < 41bp 1 0.508617310183105 1 0.468491941690445 experiment 0.982765379633791 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099867 chr1:28099860 synonymous SNV . 0 14 hm5C_associated_SNPs_30979 0 0 1 0 1 Ribosome 1 0.500231643921102 1 0.999536712157796 hm5C_site_31120 DeepMRMD:1;iRNA_m5C:0.999536712157796 31121 chr1 28099860 28099860 1 + C T OV 28099868 + 28099848 28099888 41 GAACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGCA GAACCCGGGGCCTTCGGGGCCCCAGCTCCGGGACTTCAGCA < 41bp 1 0.405940056080573 1 0.402965068817139 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099868 chr1:28099860 synonymous SNV . 0 13 hm5C_associated_SNPs_30980 0 0 1 0 1 Ribosome 1 0.500231643921151 1 0.999536712157699 hm5C_site_31121 DeepMRMD:1;iRNA_m5C:0.999536712157699 31122 chr1 28099860 28099860 1 + C T OV 28099869 + 28099849 28099889 41 AACCCGGGGCCCTCGGGGCCCCAGCTCCGGGACTTCAGCAG AACCCGGGGCCTTCGGGGCCCCAGCTCCGGGACTTCAGCAG < 41bp 1 0.431183075727209 1 0.42561137676239 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STX12 ENSG00000117758 CDS Human protein_coding chr1:28099869 chr1:28099860 synonymous SNV . 0 12 hm5C_associated_SNPs_30981 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_31122 DeepMRMD:1;iRNA_m5C:0.999536712157815 31123 chr19 8503305 8503305 1 + G T OV 8503319 + 8503299 8503339 41 TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCGCCTGAA TACTCCTAGTGGAGAAAGACCAACCAGAAAGTTCGCCTGAA < 41bp 1 0.396045918846041 1 0.0734035074710846 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503319 chr19:8503305 stopgain 0.966 1 7 hm5C_associated_SNPs_30984 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31123 DeepMRMD:1;iRNA_m5C:0.999536712157815 31124 chr15 93496701 93496701 1 + C T OV 93496712 + 93496692 93496732 41 TCTTATAGTCGTCCCTTTATCCACCCTCACCTCATGGCAGA TCTTATAGTTGTCCCTTTATCCACCCTCACCTCATGGCAGA < 41bp 1 0.210243472656592 1 0.802564144134521 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93496712 chr15:93496701 synonymous SNV . 0 10 hm5C_associated_SNPs_30985 0 0 1 0 0 Nucleus 1 0.500231643921262 0.394871711730958 0.999536712157475 hm5C_site_31124 DeepMRMD:0.394871711730958;iRNA_m5C:0.999536712157475 31125 chr1 86048604 86048604 1 + C T OV 86048584 + 86048564 86048604 41 AGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGAC AGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGAT < 41bp 1 0.325587989949539 1 0.109192162752151 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048584 chr1:86048604 nonsynonymous SNV 0.998 0 41 hm5C_associated_SNPs_30986 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31125 DeepMRMD:1;iRNA_m5C:0.999536712157815 31126 chr1 86048604 86048604 1 + C T OV 86048585 + 86048565 86048605 41 GGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGACA GGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGATA < 41bp 1 0.474519162012218 1 0.158911257982254 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048585 chr1:86048604 nonsynonymous SNV 0.998 0 40 hm5C_associated_SNPs_30987 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643925187 1 0.999536712149626 hm5C_site_31126 DeepMRMD:1;iRNA_m5C:0.999536712149626 31127 chr1 228879192 228879192 1 + C T OV 228879178 + 228879158 228879198 41 CACTGTCCCAAAGCCCCCATCATCCTAGTTGGAACGCAGTC CACTGTCCCAAAGCCCCCATCATCCTAGTTGGAATGCAGTC < 41bp 1 0.103648702391763 1 0.197666376829147 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOU ENSG00000116574 CDS Human protein_coding chr1:228879178 chr1:228879192 nonsynonymous SNV 0.592 4 35 hm5C_associated_SNPs_30989 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_31127 DeepMRMD:1;iRNA_m5C:0.999536712157815 31128 chr16 16196532 16196532 1 + A G OV 16196522 + 16196502 16196542 41 GTCCAGGGAAGGAAGCAAAGCAAATGGAGAATGGCATGCTG GTCCAGGGAAGGAAGCAAAGCAAATGGAGAGTGGCATGCTG < 41bp 1 0.329635515727807 1 0.594046771526337 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16196522 chr16:16196532 nonsynonymous SNV 0.970 1 31 hm5C_associated_SNPs_30990 0 0 1 0 2 Mitochondrion 1 0.500231643946549 0.811906456947326 0.999536712106903 hm5C_site_31128 DeepMRMD:0.811906456947326;iRNA_m5C:0.999536712106903 31129 chr20 32659994 32659994 1 + G T OV 32660003 + 32659983 32660023 41 AAATCAGATGTGGAGACCATCTTCTCTAAGTATGGCCGTGT AAATCAGATGTTGAGACCATCTTCTCTAAGTATGGCCGTGT < 41bp 1 0.123768277412 1 0.0589331686496735 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32660003 chr20:32659994 synonymous SNV . 0 12 hm5C_associated_SNPs_30992 0 0 1 0 0 Cytosol 1 0.500231643921095 1 0.999536712157811 hm5C_site_31129 DeepMRMD:1;iRNA_m5C:0.999536712157811 31130 chr7 142460381 142460381 1 + G C OV 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTCTGTGG < 41bp 1 0.176254484279667 1 0.0825222432613373 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460381 nonsynonymous SNV 0.015 3 36 hm5C_associated_SNPs_30993 0 0 0 0 2 Cytosol 1 0.500231643921074 1 0.999536712157853 hm5C_site_31130 DeepMRMD:1;iRNA_m5C:0.999536712157853 31131 chr7 142460381 142460381 1 + G C OV 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATTACCAGCAACATGTTCTCTGTGGG < 41bp 1 0.67038816483398 1 0.759953439235687 experiment 0.65922367033204 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460381 nonsynonymous SNV 0.015 3 35 hm5C_associated_SNPs_30994 0 0 0 0 2 Cytosol 1 0.500231643940445 0.480093121528626 0.999536712119111 hm5C_site_31131 DeepMRMD:0.480093121528626;iRNA_m5C:0.999536712119111 31132 chr7 142460381 142460381 1 + G C OV 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATTACCAGCAACATGTTCTCTGTGGGCTT < 41bp 1 0.453557592583851 1 0.659881055355072 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460381 nonsynonymous SNV 0.015 3 32 hm5C_associated_SNPs_30995 0 0 0 0 2 Cytosol 1 0.500231643921092 0.680237889289856 0.999536712157815 hm5C_site_31132 DeepMRMD:0.680237889289856;iRNA_m5C:0.999536712157815 31133 chr7 142460381 142460381 1 + G C OV 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGCAACATGTTCTCTGTGGGCTTCCT < 41bp 1 0.216360351003741 1 0.045592725276947 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460381 nonsynonymous SNV 0.015 3 29 hm5C_associated_SNPs_30996 0 0 0 0 2 Cytosol 1 0.500231643926677 1 0.999536712146647 hm5C_site_31133 DeepMRMD:1;iRNA_m5C:0.999536712146647 31134 chr7 142460381 142460381 1 + G C OV 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGCAACATGTTCTCTGTGGGCTTCCTTGAGGG < 41bp 1 0.267583121008937 1 0.495656818151474 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460381 nonsynonymous SNV 0.015 3 23 hm5C_associated_SNPs_30997 0 0 0 0 2 Cytosol 1 0.500229963782822 1 0.999540072434355 hm5C_site_31134 DeepMRMD:1;iRNA_m5C:0.999540072434355 31135 chr7 142460381 142460381 1 + G C OV 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTCTCTGTGGGCTTCCTTGAGGGAGGCAAGGA < 41bp 1 0.117507458199881 1 0.105245053768158 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460381 nonsynonymous SNV 0.015 3 14 hm5C_associated_SNPs_30998 0 0 0 0 2 Cytosol 1 0.500231643921105 1 0.99953671215779 hm5C_site_31135 DeepMRMD:1;iRNA_m5C:0.99953671215779 31136 chr7 142460381 142460381 1 + G C OV 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTCTCTGTGGGCTTCCTTGAGGGAGGCAAGGATTC < 41bp 1 0.0295096847619613 1 0.0470729470252991 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460381 nonsynonymous SNV 0.015 3 11 hm5C_associated_SNPs_30999 0 0 0 0 2 Cytosol 1 0.500231643923606 1 0.999536712152788 hm5C_site_31136 DeepMRMD:1;iRNA_m5C:0.999536712152788 31137 chr7 142460381 142460381 1 + G C OV 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTCTCTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA < 41bp 1 0.566239098065763 1 0.266722232103348 experiment 0.867521803868475 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460381 nonsynonymous SNV 0.015 3 10 hm5C_associated_SNPs_31000 0 0 0 0 2 Cytosol 1 0.500231643921413 1 0.999536712157173 hm5C_site_31137 DeepMRMD:1;iRNA_m5C:0.999536712157173 31138 chr4 123160823 123160823 1 + A G OV 123160814 + 123160794 123160834 41 AAGTACTAAGAGTCTTACTGCTGCTTTCTATGGGGACAAGC AAGTACTAAGAGTCTTACTGCTGCTTTCTGTGGGGACAAGC < 41bp 1 0.115881928798878 1 0.0545724034309387 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123160814 chr4:123160823 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_31001 0 0 1 0 0 Nucleus 1 0.500231631445716 1 0.999536737108567 hm5C_site_31138 DeepMRMD:1;iRNA_m5C:0.999536737108567 31139 chr9 90261465 90261465 1 + C A OV 90261459 + 90261439 90261479 41 ATTAAAAGAGGCTCGAGAATCGATGTCCAGGATAAGGTCAT ATTAAAAGAGGCTCGAGAATCGATGTACAGGATAAGGTCAT < 41bp 1 0.208079349876679 1 0.573358297348022 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90261459 chr9:90261465 synonymous SNV . 0 27 hm5C_associated_SNPs_31002 0 0 0 0 2 Ribosome 1 0.500231644018517 0.853283405303956 0.999536711962965 hm5C_site_31139 DeepMRMD:0.853283405303956;iRNA_m5C:0.999536711962965 31140 chr1 28607284 28607284 1 + C G OV 28607298 + 28607278 28607318 41 TACGCCCTCCGTGCCATCACCCGCTACATGACCTGACTCCT TACGCCGTCCGTGCCATCACCCGCTACATGACCTGACTCCT < 41bp 1 0.145680572615296 1 0.421677768230438 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28607298 chr1:28607284 nonsynonymous SNV 0.954 4 7 hm5C_associated_SNPs_31003 0 0 1 0 1 Ribosome 1 0.500231680091271 1 0.999536639817459 hm5C_site_31140 DeepMRMD:1;iRNA_m5C:0.999536639817459 31141 chr11 66834286 66834286 1 + A T OV 66834276 + 66834256 66834296 41 AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG AGCGTCCTGCTGCTTTGCTTCGATGTCACCTGCCCGAACAG < 41bp 1 0.443033368947401 1 0.876156330108643 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66834276 chr11:66834286 nonsynonymous SNV 0.997 2 31 hm5C_associated_SNPs_31004 0 0 0 0 2 Cytosol 1 0.500231647356662 0.247687339782714 0.999536705286677 hm5C_site_31141 DeepMRMD:0.247687339782714;iRNA_m5C:0.999536705286677 31142 chr19 52714675 52714675 1 + A C OV 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG CGCCCCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG < 41bp 1 0.435437729826281 1 0.0865324735641479 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714675 nonsynonymous SNV 0.986 2 4 hm5C_associated_SNPs_31005 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_31142 DeepMRMD:1;iRNA_m5C:0.999536712157813 31143 chr12 132516556 132516556 1 + A C OV 132516568 + 132516548 132516588 41 CTCCACTCACAGCCGTACCACAGGTATAAACCTTGTAGAGG CTCCACTCCCAGCCGTACCACAGGTATAAACCTTGTAGAGG < 41bp 1 0.237023651729572 1 0.263565897941589 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132516568 chr12:132516556 nonsynonymous SNV 0.246 3 9 hm5C_associated_SNPs_31007 0 0 1 0 1 Cytosol 1 0.500231659459243 1 0.999536681081514 hm5C_site_31143 DeepMRMD:1;iRNA_m5C:0.999536681081514 31144 chrX 135291488 135291488 1 + C A OV 135291501 + 135291481 135291521 41 TCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC TCTCACCATGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC < 41bp 1 0.0833024073010975 1 0.128952533006668 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291501 chrX:135291488 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_31008 0 0 0 0 1 chromatin 1 0.500231643912319 1 0.999536712175362 hm5C_site_31144 DeepMRMD:1;iRNA_m5C:0.999536712175362 31145 chrX 135291488 135291488 1 + C A OV 135291502 + 135291482 135291522 41 CTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC CTCACCATGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC < 41bp 1 0.223585227243449 1 0.0665679574012756 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291502 chrX:135291488 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_31009 0 0 0 0 1 chromatin 1 0.500231728108733 1 0.999536543782534 hm5C_site_31145 DeepMRMD:1;iRNA_m5C:0.999536543782534 31146 chr11 6631801 6631801 1 + G A OV 6631793 + 6631773 6631813 41 TGAAGACCCTGCAAAGCGACCCAAATTTGACATGATTGTGC TGAAGACCCTGCAAAGCGACCCAAATTTAACATGATTGTGC < 41bp 1 0.202816401951152 1 0.055408239364624 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6631793 chr11:6631801 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_31010 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643964731 1 0.999536712070539 hm5C_site_31146 DeepMRMD:1;iRNA_m5C:0.999536712070539 31147 chr17 55194232 55194232 1 + T A OV 55194240 + 55194220 55194260 41 GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTC GGTCTGACTTTGACACCCTGCCGTTTCAGGGAGCAGAAGTC < 41bp 1 0.0464932011762086 1 0.0786873400211334 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194240 chr17:55194232 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_31011 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164369696 1 0.99953671260608 hm5C_site_31147 DeepMRMD:1;iRNA_m5C:0.99953671260608 31148 chr17 55194232 55194232 1 + T A OV 55194241 + 55194221 55194261 41 GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTCC GTCTGACTTTGACACCCTGCCGTTTCAGGGAGCAGAAGTCC < 41bp 1 0.0544118827147958 1 0.0560313761234283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194241 chr17:55194232 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_31012 0 0 1 0 2 Endoplasmic reticulum 1 0.500244137915243 1 0.999511724169513 hm5C_site_31148 DeepMRMD:1;iRNA_m5C:0.999511724169513 31149 chr20 37144950 37144950 1 + C A OV 37144939 + 37144919 37144959 41 GCAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC GCAAGAATTGAATCAGTATCCCTGCCTTAAAAATCTGCCTC < 41bp 1 0.132272315535863 1 0.242839217185974 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37144939 chr20:37144950 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_31013 0 0 1 0 1 Nucleus 1 0.500231633441238 1 0.999536733117524 hm5C_site_31149 DeepMRMD:1;iRNA_m5C:0.999536733117524 31150 chr11 71946470 71946470 1 + C A OV 71946459 + 71946439 71946479 41 GCTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACC GCTCCATGAAGGTGCGGGTGCCCACGGAGCGACTGGGCACC < 41bp 1 0.115353621916795 1 0.0670367181301117 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946459 chr11:71946470 synonymous SNV . 0 32 hm5C_associated_SNPs_31014 0 0 1 0 1 Cytosol 1 0.500231635450828 1 0.999536729098344 hm5C_site_31150 DeepMRMD:1;iRNA_m5C:0.999536729098344 31151 chr11 71946470 71946470 1 + C A OV 71946460 + 71946440 71946480 41 CTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCC CTCCATGAAGGTGCGGGTGCCCACGGAGCGACTGGGCACCC < 41bp 1 0.334709694490245 1 0.18289852142334 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946460 chr11:71946470 synonymous SNV . 0 31 hm5C_associated_SNPs_31015 0 0 1 0 1 Cytosol 1 0.500230555673034 1 0.999538888653933 hm5C_site_31151 DeepMRMD:1;iRNA_m5C:0.999538888653933 31152 chr11 71946470 71946470 1 + C A OV 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG GTGCCCACGGAGCGACTGGGCACCCGTGAGCGGCTCTACGG < 41bp 1 0.392354593323214 1 0.115058988332748 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946470 synonymous SNV . 0 15 hm5C_associated_SNPs_31016 0 0 1 0 1 Cytosol 1 0.500231626824005 1 0.999536746351991 hm5C_site_31152 DeepMRMD:1;iRNA_m5C:0.999536746351991 31153 chr11 71946470 71946470 1 + C A OV 71946478 + 71946458 71946498 41 GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG GCCCACGGAGCGACTGGGCACCCGTGAGCGGCTCTACGGTG < 41bp 1 0.327343998493085 1 0.101024359464645 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946478 chr11:71946470 synonymous SNV . 0 13 hm5C_associated_SNPs_31017 0 0 1 0 1 Cytosol 1 0.500231644766818 1 0.999536710466363 hm5C_site_31153 DeepMRMD:1;iRNA_m5C:0.999536710466363 31154 chr11 71946470 71946470 1 + C A OV 71946479 + 71946459 71946499 41 CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG CCCACGGAGCGACTGGGCACCCGTGAGCGGCTCTACGGTGG < 41bp 1 0.167745624262474 1 0.464266926050186 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946479 chr11:71946470 synonymous SNV . 0 12 hm5C_associated_SNPs_31018 0 0 1 0 1 Cytosol 1 0.500231643905175 1 0.999536712189651 hm5C_site_31154 DeepMRMD:1;iRNA_m5C:0.999536712189651 31155 chr7 91708846 91708846 1 + G T OV 91708830 + 91708810 91708850 41 ATAGATCATCTGAGCAAAGACAAACCTGAACTAGAAGTAGT ATAGATCATCTGAGCAAAGACAAACCTGAACTAGAATTAGT < 41bp 1 0.0617401011354364 1 0.12935608625412 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91708830 chr7:91708846 nonsynonymous SNV 0.036 0 37 hm5C_associated_SNPs_31020 0 0 1 0 0 Nucleus 1 0.50023059598674 1 0.99953880802652 hm5C_site_31155 DeepMRMD:1;iRNA_m5C:0.99953880802652 31156 chr6 158735058 158735058 1 + G T OV 158735059 + 158735039 158735079 41 TGAAGAAAGTATGTATGCAGCAGTGGAACATGGGCCTGTGC TGAAGAAAGTATGTATGCATCAGTGGAACATGGGCCTGTGC < 41bp 1 0.237182593676803 1 0.22948095202446 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TULP4 ENSG00000130338 CDS Human protein_coding chr6:158735059 chr6:158735058 nonsynonymous SNV 0.991 1 20 hm5C_associated_SNPs_31021 0 0 1 0 0 Ribosome 1 0.500233319756761 1 0.999533360486477 hm5C_site_31156 DeepMRMD:1;iRNA_m5C:0.999533360486477 31157 chr5 65118661 65118661 1 + G A OV 65118652 + 65118632 65118672 41 AATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGC AATCCTGAAACCTGGGGGATCTCTGGACGACATGGACATGC < 41bp 1 0.396480735844019 1 0.238190561532974 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65118652 chr5:65118661 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_31022 0 0 1 0 1 Ribosome 1 0.500231643648672 1 0.999536712702656 hm5C_site_31157 DeepMRMD:1;iRNA_m5C:0.999536712702656 31158 chrX 41000577 41000577 1 + A G OV 41000586 + 41000566 41000606 41 TCAATGGAAAGATGAATGCACTGAATGAAGTTAATAAGGTG TCAATGGAAAGGTGAATGCACTGAATGAAGTTAATAAGGTG < 41bp 1 0.322366559863296 1 0.29094922542572 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41000586 chrX:41000577 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_31023 0 0 1 0 1 Nucleus 1 0.500231614035543 1 0.999536771928915 hm5C_site_31158 DeepMRMD:1;iRNA_m5C:0.999536771928915 31159 chrX 70519852 70519852 1 + G T OV 70519864 + 70519844 70519884 41 GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGCAGCT GGGCAATTTGTGGAACTCCTCCTGCATTCAACCGTGCAGCT < 41bp 1 0.209029641005986 1 0.284958869218826 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70519864 chrX:70519852 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_31024 0 0 1 0 1 Nucleus 1 0.500231643922926 1 0.999536712154148 hm5C_site_31159 DeepMRMD:1;iRNA_m5C:0.999536712154148 31160 chrX 73047108 73047108 1 + C A OV 73047096 - 73047076 73047116 41 GGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGAAC GGCAGAGGTGCTTCCTAACCCCTGCCTGATAGGTGCAGAAC < 41bp 1 0.0939168449624184 1 0.311327397823334 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047096 chrX:73047108 . . 0 9 hm5C_associated_SNPs_31025 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31160 DeepMRMD:1;iRNA_m5C:0.999536712157815 31161 chrX 73047108 73047108 1 + C A OV 73047098 - 73047078 73047118 41 GTGGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGA GTGGCAGAGGTGCTTCCTAACCCCTGCCTGATAGGTGCAGA < 41bp 1 0.173832394535295 1 0.265608906745911 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047098 chrX:73047108 . . 0 11 hm5C_associated_SNPs_31026 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31161 DeepMRMD:1;iRNA_m5C:0.999536712157815 31162 chrX 73047108 73047108 1 + C A OV 73047102 - 73047082 73047122 41 ATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTG ATGTGTGGCAGAGGTGCTTCCTAACCCCTGCCTGATAGGTG < 41bp 1 0.0906518638386969 1 0.143833607435226 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047102 chrX:73047108 . . 0 15 hm5C_associated_SNPs_31027 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31162 DeepMRMD:1;iRNA_m5C:0.999536712157815 31163 chrX 73047108 73047108 1 + C A OV 73047103 - 73047083 73047123 41 CATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGT CATGTGTGGCAGAGGTGCTTCCTAACCCCTGCCTGATAGGT < 41bp 1 0.0496497388124988 1 0.0992226898670197 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047103 chrX:73047108 . . 0 16 hm5C_associated_SNPs_31028 0 0 1 1 0 unknown 1 0.500232203610856 1 0.999535592778288 hm5C_site_31163 DeepMRMD:1;iRNA_m5C:0.999535592778288 31164 chrX 73047108 73047108 1 + C A OV 73047106 - 73047086 73047126 41 TGTCATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTGATA TGTCATGTGTGGCAGAGGTGCTTCCTAACCCCTGCCTGATA < 41bp 1 0.0927945759402637 1 0.133551508188248 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047106 chrX:73047108 . . 0 19 hm5C_associated_SNPs_31029 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31164 DeepMRMD:1;iRNA_m5C:0.999536712157815 31165 chr14 74424918 74424918 1 + G A OV 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGGCCAACTCCAGCCCTTGGGTTCATATTAC < 41bp 1 0.390196988396057 1 0.226500034332275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424918 nonsynonymous SNV 0.992 1 16 hm5C_associated_SNPs_31030 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31165 DeepMRMD:1;iRNA_m5C:0.999536712157815 31166 chr5 162905760 162905760 1 + G C OV 162905772 + 162905752 162905792 41 AAAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT AAAAGTATCACAGTATGGTGCAAAGCCTTGAAGATGTTACT < 41bp 1 0.270441635660442 1 0.198527276515961 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162905772 chr5:162905760 nonsynonymous SNV 0.001 0 9 hm5C_associated_SNPs_31031 0 0 1 0 2 Cytosol 1 0.500231644142689 1 0.999536711714622 hm5C_site_31166 DeepMRMD:1;iRNA_m5C:0.999536711714622 31167 chr1 12065962 12065962 1 + C T OV 12065958 + 12065938 12065978 41 TTCCTGGGCCCCAAGAACAGCCGTCGGGCCTTGATGGGCTA TTCCTGGGCCCCAAGAACAGCCGTTGGGCCTTGATGGGCTA < 41bp 1 0.111221946132173 1 0.337304979562759 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12065958 chr1:12065962 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_31032 0 0 1 0 0 Ribosome 1 0.500231643700181 1 0.999536712599638 hm5C_site_31167 DeepMRMD:1;iRNA_m5C:0.999536712599638 31168 chr16 30779683 30779683 1 + G A OV 30779681 + 30779661 30779701 41 CAGGGCCCTTCCTCCCGGGGCCGAGAACCTGAGGCCAGGCC CAGGGCCCTTCCTCCCGGGGCCAAGAACCTGAGGCCAGGCC < 41bp 1 0.0898468798803401 1 0.165661543607712 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30779681 chr16:30779683 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_31033 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31168 DeepMRMD:1;iRNA_m5C:0.999536712157815 31169 chr7 98601890 98601890 1 + G C OV 98601905 + 98601885 98601925 41 TCTTGGAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTC TCTTGCAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTC < 41bp 1 0.128142865709468 1 0.466768711805344 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98601905 chr7:98601890 nonsynonymous SNV 0.966 3 6 hm5C_associated_SNPs_31034 0 0 1 0 1 Nucleus 1 0.50023164391102 1 0.99953671217796 hm5C_site_31169 DeepMRMD:1;iRNA_m5C:0.99953671217796 31170 chr16 55532238 55532238 1 + G A OV 55532248 + 55532228 55532268 41 GCACCCTGGAGCGAGGGTACCCCAAGCCACTGACCAGCCTG GCACCCTGGAACGAGGGTACCCCAAGCCACTGACCAGCCTG < 41bp 1 0.587009963142608 1 0.123633146286011 experiment 0.825980073714784 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55532248 chr16:55532238 synonymous SNV . 0 11 hm5C_associated_SNPs_31035 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_31170 DeepMRMD:1;iRNA_m5C:0.999536712157815 31171 chr19 18967738 18967738 1 + C T OV 18967720 + 18967700 18967740 41 CTGCTGCACATGTGTGGGCGCCGGTGACCCGAGGCTGGCCA CTGCTGCACATGTGTGGGCGCCGGTGACCCGAGGCTGGTCA < 41bp 1 0.193446032511392 1 0.592044115066528 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18967720 chr19:18967738 nonsynonymous SNV 0.887 1 39 hm5C_associated_SNPs_31036 0 0 1 0 2 Nucleus 1 0.500231775694936 0.815911769866944 0.999536448610129 hm5C_site_31171 DeepMRMD:0.815911769866944;iRNA_m5C:0.999536448610129 31172 chr6 31602070 31602070 1 + G C OV 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCACGCCCTCAG < 41bp 1 0.520613344563752 1 0.321363866329193 experiment 0.958773310872496 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602070 nonsynonymous SNV 0.998 0 33 hm5C_associated_SNPs_31037 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31172 DeepMRMD:1;iRNA_m5C:0.999536712157815 31173 chr6 31602070 31602070 1 + G C OV 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCACGCCCTCAGG < 41bp 1 0.507938993300459 1 0.805681943893433 experiment 0.984122013399083 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602070 nonsynonymous SNV 0.998 0 32 hm5C_associated_SNPs_31038 0 0 1 0 2 Ribosome 1 0.500231643921092 0.388636112213134 0.999536712157815 hm5C_site_31173 DeepMRMD:0.388636112213134;iRNA_m5C:0.999536712157815 31174 chr6 31602070 31602070 1 + G C OV 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCACGCCCTCAGGCAGAGTC < 41bp 1 0.145800680553635 1 0.137005776166916 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602070 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_31039 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31174 DeepMRMD:1;iRNA_m5C:0.999536712157815 31175 chr6 31602070 31602070 1 + G C OV 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGA < 41bp 1 0.184588214830413 1 0.0714057683944702 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602070 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_31040 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31175 DeepMRMD:1;iRNA_m5C:0.999536712157815 31176 chr6 31602070 31602070 1 + G C OV 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGAT < 41bp 1 0.309851885167908 1 0.159002035856247 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602070 nonsynonymous SNV 0.998 0 18 hm5C_associated_SNPs_31041 0 0 1 0 2 Ribosome 1 0.500231643921957 1 0.999536712156086 hm5C_site_31176 DeepMRMD:1;iRNA_m5C:0.999536712156086 31177 chr6 31602070 31602070 1 + G C OV 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGATA < 41bp 1 0.384163225086912 1 0.350755035877228 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602070 nonsynonymous SNV 0.998 0 17 hm5C_associated_SNPs_31042 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31177 DeepMRMD:1;iRNA_m5C:0.999536712157815 31178 chr6 31602070 31602070 1 + G C OV 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGATACA < 41bp 1 0.441166109450076 1 0.840992271900177 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602070 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_31043 0 0 1 0 2 Ribosome 1 0.500231643921141 0.318015456199646 0.999536712157717 hm5C_site_31178 DeepMRMD:0.318015456199646;iRNA_m5C:0.999536712157717 31179 chr6 31602070 31602070 1 + G C OV 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCACGCCCTCAGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.400568301577624 1 0.662542223930359 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602070 nonsynonymous SNV 0.998 0 11 hm5C_associated_SNPs_31044 0 0 1 0 2 Ribosome 1 0.500231643921092 0.674915552139282 0.999536712157815 hm5C_site_31179 DeepMRMD:0.674915552139282;iRNA_m5C:0.999536712157815 31180 chr8 145698759 145698759 1 + G C OV 145698760 + 145698740 145698780 41 GCTCTCGCGCCCGCAGAGGGCCTGCCCCTCTAGTCCTGGGT GCTCTCGCGCCCGCAGAGGCCCTGCCCCTCTAGTCCTGGGT < 41bp 1 0.0790187439006246 1 0.146554797887802 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145698760 chr8:145698759 nonsynonymous SNV 0.001 1 20 hm5C_associated_SNPs_31045 0 0 0 0 0 nucleolus 1 0.500231643924837 1 0.999536712150326 hm5C_site_31180 DeepMRMD:1;iRNA_m5C:0.999536712150326 31181 chr6 80409218 80409218 1 + G A OV 80409221 + 80409201 80409241 41 TTTTTTTTTTATAGGCAGAACCTTAGAGAAGAAGAGTGGAA TTTTTTTTTTATAGGCAAAACCTTAGAGAAGAAGAGTGGAA < 41bp 1 0.0735567041202812 1 0.150394916534424 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SH3BGRL2 ENSG00000198478 CDS Human protein_coding chr6:80409221 chr6:80409218 nonsynonymous SNV 0.956 0 18 hm5C_associated_SNPs_31046 0 0 1 0 1 Ribosome 1 0.500231643973109 1 0.999536712053781 hm5C_site_31181 DeepMRMD:1;iRNA_m5C:0.999536712053781 31182 chr2 217311769 217311769 1 + G A OV 217311766 + 217311746 217311786 41 CAAGAGGGTGATCCTGTTGTCGGGCACACCAGCCATGTCCC CAAGAGGGTGATCCTGTTGTCGGACACACCAGCCATGTCCC < 41bp 1 0.589913617018849 1 0.849772572517395 experiment 0.820172765962303 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311766 chr2:217311769 nonsynonymous SNV 0.970 5 24 hm5C_associated_SNPs_31047 0 0 0 0 1 chromatin 1 0.500231643844836 0.30045485496521 0.999536712310328 hm5C_site_31182 DeepMRMD:0.30045485496521;iRNA_m5C:0.999536712310328 31183 chr1 156876650 156876650 1 + C T OV 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCGATCCCCAGACTGGAGCCTGCTTCTGCTCCGCAGAGAG < 41bp 1 0.279471866602229 1 0.207077115774155 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876650 nonsynonymous SNV 0.979 1 31 hm5C_associated_SNPs_31048 0 0 0 0 1 cytosol 1 0.500233647293671 1 0.999532705412657 hm5C_site_31183 DeepMRMD:1;iRNA_m5C:0.999532705412657 31184 chr2 157407246 157407246 1 + C A OV 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCATGGTTAT < 41bp 1 0.135217574170557 1 0.280665516853333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407246 nonsynonymous SNV 0.991 5 34 hm5C_associated_SNPs_31049 0 0 1 2 1 Endoplasmic reticulum 1 0.500252548182142 1 0.999494903635716 hm5C_site_31184 DeepMRMD:1;iRNA_m5C:0.999494903635716 31185 chr17 36873089 36873089 1 + G T OV 36873079 + 36873059 36873099 41 CCCAGCTGCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCT CCCAGCTGCCCCATCCTTGCCCAGTGCCCATCTGGCTGGCT < 41bp 1 0.188085199310467 1 0.11389896273613 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873079 chr17:36873089 nonsynonymous SNV 0.988 2 31 hm5C_associated_SNPs_31050 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31185 DeepMRMD:1;iRNA_m5C:0.999536712157815 31186 chr17 36873089 36873089 1 + G T OV 36873080 + 36873060 36873100 41 CCAGCTGCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTT CCAGCTGCCCCATCCTTGCCCAGTGCCCATCTGGCTGGCTT < 41bp 1 0.308413415251659 1 0.092524915933609 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873080 chr17:36873089 nonsynonymous SNV 0.988 2 30 hm5C_associated_SNPs_31051 0 0 1 0 0 chromatin 1 0.500231643921083 1 0.999536712157833 hm5C_site_31186 DeepMRMD:1;iRNA_m5C:0.999536712157833 31187 chr17 36873089 36873089 1 + G T OV 36873085 + 36873065 36873105 41 TGCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCG TGCCCCATCCTTGCCCAGTGCCCATCTGGCTGGCTTTACCG < 41bp 1 0.0534218330080307 1 0.0430538654327393 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873085 chr17:36873089 nonsynonymous SNV 0.988 2 25 hm5C_associated_SNPs_31052 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_31187 DeepMRMD:1;iRNA_m5C:0.999536712157815 31188 chr17 36873089 36873089 1 + G T OV 36873086 + 36873066 36873106 41 GCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCGC GCCCCATCCTTGCCCAGTGCCCATCTGGCTGGCTTTACCGC < 41bp 1 0.0259531695671031 1 0.0349054634571075 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873086 chr17:36873089 nonsynonymous SNV 0.988 2 24 hm5C_associated_SNPs_31053 0 0 1 0 0 chromatin 1 0.500231656203687 1 0.999536687592626 hm5C_site_31188 DeepMRMD:1;iRNA_m5C:0.999536687592626 31189 chr17 36873089 36873089 1 + G T OV 36873087 + 36873067 36873107 41 CCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCGCC CCCCATCCTTGCCCAGTGCCCATCTGGCTGGCTTTACCGCC < 41bp 1 0.133859706486381 1 0.0571086406707764 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873087 chr17:36873089 nonsynonymous SNV 0.988 2 23 hm5C_associated_SNPs_31054 0 0 1 0 0 chromatin 1 0.500231643972374 1 0.999536712055252 hm5C_site_31189 DeepMRMD:1;iRNA_m5C:0.999536712055252 31190 chr19 50548294 50548294 1 + G C OV 50548302 + 50548282 50548322 41 CGACCACAGCCAGCAGGATTCTGTTCAGGAAGGGGAGAAAC CGACCACAGCCACCAGGATTCTGTTCAGGAAGGGGAGAAAC < 41bp 1 0.273592371981369 1 0.0583143830299377 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50548302 chr19:50548294 nonsynonymous SNV 0.059 1 13 hm5C_associated_SNPs_31055 0 0 1 0 0 Cytosol 1 0.500231643920942 1 0.999536712158115 hm5C_site_31190 DeepMRMD:1;iRNA_m5C:0.999536712158115 31191 chr10 70737292 70737292 1 + G A OV 70737312 + 70737292 70737332 41 GATTCCGTGCCTCCCACTGCCATTAGTCACTTCAAACAATC AATTCCGTGCCTCCCACTGCCATTAGTCACTTCAAACAATC < 41bp 1 0.362579707105731 1 0.017286479473114 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70737312 chr10:70737292 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_31056 0 0 1 0 1 Nucleus 1 0.500231643207141 1 0.999536713585718 hm5C_site_31191 DeepMRMD:1;iRNA_m5C:0.999536713585718 31192 chr7 40102476 40102476 1 + G T OV 40102465 + 40102445 40102485 41 TAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGA TAATTACTTTATGGTACCGTCCACCTGAACTTCTACTGGGA < 41bp 1 0.0482956426452935 1 0.139220505952835 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102465 chr7:40102476 synonymous SNV . 0 32 hm5C_associated_SNPs_31057 0 0 1 0 2 Nucleus 1 0.500231643921627 1 0.999536712156745 hm5C_site_31192 DeepMRMD:1;iRNA_m5C:0.999536712156745 31193 chr2 27456286 27456286 1 + G A OV 27456304 + 27456284 27456324 41 CCGGGTGCTGGGCACCTCCCCTGAAGCCATTGACTCGGCTG CCAGGTGCTGGGCACCTCCCCTGAAGCCATTGACTCGGCTG < 41bp 1 0.678121689400875 1 0.433006286621094 experiment 0.643756621198251 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27456304 chr2:27456286 nonsynonymous SNV 0.996 4 3 hm5C_associated_SNPs_31059 0 0 1 0 0 Exosome 1 0.500231432952099 1 0.999537134095803 hm5C_site_31193 DeepMRMD:1;iRNA_m5C:0.999537134095803 31194 chr5 176524646 176524646 1 + C G OV 176524627 + 176524607 176524647 41 CTGTCTTCAGCCACGACCCCCTGCCATTGGGATCCAGCTCC CTGTCTTCAGCCACGACCCCCTGCCATTGGGATCCAGCTGC < 41bp 1 0.318469029147095 1 0.0316917598247528 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524627 chr5:176524646 nonsynonymous SNV 0.153 0 40 hm5C_associated_SNPs_31060 0 0 1 0 0 Endoplasmic reticulum 1 0.500231720952814 1 0.999536558094373 hm5C_site_31194 DeepMRMD:1;iRNA_m5C:0.999536558094373 31195 chr20 61291851 61291851 1 + C T OV 61291833 + 61291813 61291853 41 GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCTGT < 41bp 1 0.405087293288523 1 0.303100943565369 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291833 chr20:61291851 synonymous SNV . 0 39 hm5C_associated_SNPs_31061 0 0 0 0 2 Endoplasmic reticulum 1 0.500231640168295 1 0.99953671966341 hm5C_site_31195 DeepMRMD:1;iRNA_m5C:0.99953671966341 31196 chr20 62366049 62366049 1 + T C OV 62366054 + 62366034 62366074 41 TGCCCTCTGTCCGTCTCTTGCAGTGGTGGGGTCAGATGCTG TGCCCTCTGTCCGTCCCTTGCAGTGGTGGGGTCAGATGCTG < 41bp 1 0.441134751060493 1 0.247981309890747 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZGPAT ENSG00000197114 CDS Human protein_coding chr20:62366054 chr20:62366049 synonymous SNV . 0 16 hm5C_associated_SNPs_31063 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31196 DeepMRMD:1;iRNA_m5C:0.999536712157815 31197 chr19 47423186 47423186 1 + C T OV 47423199 + 47423179 47423219 41 ACGAGGCCCACTTAGAGAAGCTGAGGAACGAAAGGAAAAGA ACGAGGCTCACTTAGAGAAGCTGAGGAACGAAAGGAAAAGA < 41bp 1 0.37180319576339 1 0.413810849189758 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47423199 chr19:47423186 synonymous SNV . 0 8 hm5C_associated_SNPs_31064 0 0 1 0 0 Ribosome 1 0.50023186824014 1 0.99953626351972 hm5C_site_31197 DeepMRMD:1;iRNA_m5C:0.99953626351972 31198 chr19 41078000 41078000 1 + C T OV 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCTGGGAGCACACACGGTGGGG < 41bp 1 0.633038539099258 1 0.874019503593445 experiment 0.733922921801484 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078000 synonymous SNV . 0 22 hm5C_associated_SNPs_31065 0 0 1 0 2 cytosol 1 0.50023158527477 0.25196099281311 0.99953682945046 hm5C_site_31198 DeepMRMD:0.25196099281311;iRNA_m5C:0.99953682945046 31199 chr10 75867093 75867093 1 + C G OV 75867081 + 75867061 75867101 41 ACCTCAGGAGCCTGACTTCCCGCCGCCTCCACCAGACCTTG ACCTCAGGAGCCTGACTTCCCGCCGCCTCCACGAGACCTTG < 41bp 1 0.662282909626358 1 0.199391514062881 experiment 0.675434180747283 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75867081 chr10:75867093 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_31066 0 0 1 0 1 Nucleus 1 0.500231647776855 1 0.999536704446289 hm5C_site_31199 DeepMRMD:1;iRNA_m5C:0.999536704446289 31200 chr19 16314404 16314404 1 + G A OV 16314393 + 16314373 16314413 41 TCCTGGCCCACGGGGGGGTCCGTTTCATGTGGATCAAACAC TCCTGGCCCACGGGGGGGTCCGTTTCATGTGAATCAAACAC < 41bp 1 0.0923151059941879 1 0.182765632867813 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16314393 chr19:16314404 stopgain 1.000 1 32 hm5C_associated_SNPs_31068 0 0 1 0 1 Ribosome 1 0.500231643827129 1 0.999536712345743 hm5C_site_31200 DeepMRMD:1;iRNA_m5C:0.999536712345743 31201 chrX 70775816 70775816 1 + G T OV 70775814 + 70775794 70775834 41 TGTTTTCTAGGTTGCTGAAGCAGAAGATTGTTATAATACAG TGTTTTCTAGGTTGCTGAAGCATAAGATTGTTATAATACAG < 41bp 1 0.326255853378623 1 0.380445420742035 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70775814 chrX:70775816 stopgain 1.000 1 23 hm5C_associated_SNPs_31070 0 0 1 0 1 Nucleus 1 0.500231622894404 1 0.999536754211191 hm5C_site_31201 DeepMRMD:1;iRNA_m5C:0.999536754211191 31202 chr1 192779364 192779364 1 + C T PAAD 192779358 + 192779338 192779378 41 TTCCTCTACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA TTCCTCTACTCCTGGGAAGCCCAAAATCGGCAAAAAAAGCA < 41bp 1 0.344053754846467 1 0.587851703166962 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS2 ENSG00000116741 CDS Human protein_coding chr1:192779358 chr1:192779364 nonsynonymous SNV 0.995 0 27 hm5C_associated_SNPs_31071 0 0 0 0 2 Nucleus 1 0.50023164392107 0.824296593666076 0.999536712157861 hm5C_site_31202 DeepMRMD:0.824296593666076;iRNA_m5C:0.999536712157861 31203 chr2 242695366 242695366 1 + G A PAAD 242695362 + 242695342 242695382 41 CCTGTGGAGCGGCTCTACGACATCGTGACTGACCTGCGCGC CCTGTGGAGCGGCTCTACGACATCATGACTGACCTGCGCGC < 41bp 1 0.692307622234091 1 0.306806743144989 experiment 0.615384755531817 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242695362 chr2:242695366 nonsynonymous SNV 0.020 5 25 hm5C_associated_SNPs_31073 0 0 1 0 0 Ribosome 1 0.500231643908814 1 0.999536712182372 hm5C_site_31203 DeepMRMD:1;iRNA_m5C:0.999536712182372 31204 chr1 201966564 201966564 1 + C T PAAD 201966545 + 201966525 201966565 41 CCTGCTAGCTGGGGACCGCTCCTTGGCAGATGTCATCATCC CCTGCTAGCTGGGGACCGCTCCTTGGCAGATGTCATCATTC < 41bp 1 0.194398840673504 1 0.11378288269043 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966545 chr1:201966564 synonymous SNV . 0 40 hm5C_associated_SNPs_31074 0 0 1 0 0 Ribosome 1 0.500231639851267 1 0.999536720297466 hm5C_site_31204 DeepMRMD:1;iRNA_m5C:0.999536720297466 31205 chr20 19981313 19981313 1 + C G PAAD 19981314 + 19981294 19981334 41 GTTGCACAGGAAAGACCCTCCTTGTGAGACCTTACATCACC GTTGCACAGGAAAGACCCTGCTTGTGAGACCTTACATCACC < 41bp 1 0.381310173966264 1 0.181915163993835 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19981314 chr20:19981313 synonymous SNV . 0 20 hm5C_associated_SNPs_31075 0 0 0 0 1 Nucleus 1 0.500231661897009 1 0.999536676205981 hm5C_site_31205 DeepMRMD:1;iRNA_m5C:0.999536676205981 31206 chr14 100594935 100594935 1 + A C PAAD 100594949 + 100594929 100594969 41 CCCCCCACCCCCAGTCCCACCTCCACCCACTGGGGCTACCC CCCCCCCCCCCCAGTCCCACCTCCACCCACTGGGGCTACCC < 41bp 1 0.657631991275933 1 0.93513435125351 experiment 0.684736017448133 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EVL ENSG00000196405 CDS Human protein_coding chr14:100594949 chr14:100594935 synonymous SNV . 0 7 hm5C_associated_SNPs_31076 0 0 0 0 1 chromatin 1 0.50023164392108 0.12973129749298 0.99953671215784 hm5C_site_31206 DeepMRMD:0.12973129749298;iRNA_m5C:0.99953671215784 31207 chr20 60701454 60701454 1 + G A PAAD 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTACGGCCCGCTGGCGGCCAACTCCCTGCTCAGCC < 41bp 1 0.681520705770127 1 0.800320386886597 experiment 0.636958588459747 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701454 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_31077 0 0 1 0 2 Ribosome 1 0.500231644710947 0.399359226226806 0.999536710578107 hm5C_site_31207 DeepMRMD:0.399359226226806;iRNA_m5C:0.999536710578107 31208 chr19 3574395 3574395 1 + C T PAAD 3574378 + 3574358 3574398 41 AACGACGCAGCCCGGTTCTGCAGCCGGTGAAGAAACGCGGC AACGACGCAGCCCGGTTCTGCAGCCGGTGAAGAAACGTGGC < 41bp 1 0.515237474299193 1 0.553352773189545 experiment 0.969525051401614 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HMG20B ENSG00000064961 CDS Human protein_coding chr19:3574378 chr19:3574395 nonsynonymous SNV 0.990 1 38 hm5C_associated_SNPs_31078 0 0 1 0 1 Cytosol 1 0.500231644043013 0.89329445362091 0.999536711913974 hm5C_site_31208 DeepMRMD:0.89329445362091;iRNA_m5C:0.999536711913974 31209 chr3 13672892 13672892 1 + G A PAAD 13672900 + 13672880 13672920 41 TCAACGTGCCAGGGAGCTACCAGTGTGCATGCCCTGAGCAG TCAACGTGCCAGAGAGCTACCAGTGTGCATGCCCTGAGCAG < 41bp 1 0.522167948734711 1 0.33734005689621 experiment 0.955664102530577 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672900 chr3:13672892 nonsynonymous SNV 0.920 5 13 hm5C_associated_SNPs_31079 0 0 0 0 1 Endoplasmic reticulum 1 0.500231393812517 1 0.999537212374967 hm5C_site_31209 DeepMRMD:1;iRNA_m5C:0.999537212374967 31210 chr22 40662850 40662850 1 + C T PAAD 40662849 + 40662829 40662869 41 AACACCTAAGGATGAGGAACCCAGTGGTTGGGAAGAGCCAT AACACCTAAGGATGAGGAACCTAGTGGTTGGGAAGAGCCAT < 41bp 1 0.210877258730043 1 0.3729527592659 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40662849 chr22:40662850 synonymous SNV . 0 22 hm5C_associated_SNPs_31080 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31210 DeepMRMD:1;iRNA_m5C:0.999536712157815 31211 chr18 48604703 48604703 1 + T G PAAD 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAAAGGCGGGGGACCGGATTACCCAAGACAGAGCA < 41bp 1 0.515730676463909 1 0.71130633354187 experiment 0.968538647072182 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604703 nonsynonymous SNV 1.000 5 14 hm5C_associated_SNPs_31081 0 0 1 0 1 Cytosol 1 0.500231643921092 0.57738733291626 0.999536712157815 hm5C_site_31211 DeepMRMD:0.57738733291626;iRNA_m5C:0.999536712157815 31212 chr2 67631744 67631744 1 + G A PAAD 67631731 + 67631711 67631751 41 TCAGAAAGTATATGTGAGATCAATAATAATTCCGAACATGG TCAGAAAGTATATGTGAGATCAATAATAATTCCAAACATGG < 41bp 1 0.519656117321046 1 0.0910357236862183 experiment 0.960687765357908 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETAA1 ENSG00000143971 CDS Human protein_coding chr2:67631731 chr2:67631744 nonsynonymous SNV 0.867 0 34 hm5C_associated_SNPs_31082 0 0 0 0 0 nucleolus 1 0.500231639563205 1 0.999536720873591 hm5C_site_31212 DeepMRMD:1;iRNA_m5C:0.999536720873591 31213 chr17 7750213 7750213 1 + C T PAAD 7750209 + 7750189 7750229 41 CACCACCACCACCACCACCACCACCACCCCTGCCTGGCCTG CACCACCACCACCACCACCACCACTACCCCTGCCTGGCCTG < 41bp 1 0.0480859035036001 1 0.196627974510193 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750209 chr17:7750213 nonsynonymous SNV 0.923 2 25 hm5C_associated_SNPs_31083 0 0 1 0 1 Cytosol 1 0.500231643921066 1 0.999536712157867 hm5C_site_31213 DeepMRMD:1;iRNA_m5C:0.999536712157867 31214 chr9 135946986 135946986 1 + G C PAAD 135946966 + 135946946 135946986 41 ACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGG ACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGC < 41bp 1 0.321138187459143 1 0.347949355840683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946966 chr9:135946986 synonymous SNV . 0 41 hm5C_associated_SNPs_31084 0 0 0 0 0 exosome 1 0.50023165154431 1 0.999536696911379 hm5C_site_31214 DeepMRMD:1;iRNA_m5C:0.999536696911379 31215 chr9 135946986 135946986 1 + G C PAAD 135946967 + 135946947 135946987 41 CTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGG CTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGCG < 41bp 1 0.478468770476354 1 0.12480217218399 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946967 chr9:135946986 synonymous SNV . 0 40 hm5C_associated_SNPs_31085 0 0 0 0 0 exosome 1 0.500233215145782 1 0.999533569708436 hm5C_site_31215 DeepMRMD:1;iRNA_m5C:0.999533569708436 31216 chr9 135946986 135946986 1 + G C PAAD 135946969 + 135946949 135946989 41 CCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC CCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGCGCC < 41bp 1 0.233272383642946 1 0.0927327275276184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946969 chr9:135946986 synonymous SNV . 0 38 hm5C_associated_SNPs_31086 0 0 0 0 0 exosome 1 0.500236791251623 1 0.999526417496754 hm5C_site_31216 DeepMRMD:1;iRNA_m5C:0.999526417496754 31217 chr9 135946986 135946986 1 + G C PAAD 135946970 + 135946950 135946990 41 CGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC CGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGCGCCC < 41bp 1 0.482850812839773 1 0.223700612783432 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946970 chr9:135946986 synonymous SNV . 0 37 hm5C_associated_SNPs_31087 0 0 0 0 0 exosome 1 0.500231643921102 1 0.999536712157795 hm5C_site_31217 DeepMRMD:1;iRNA_m5C:0.999536712157795 31218 chr9 135946986 135946986 1 + G C PAAD 135946988 + 135946968 135947008 41 GCCCACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGG GCCCACGGGTGACTCCGGCGCCCCCCCCGTGACCCCCACGG < 41bp 1 0.20904935182747 1 0.137004256248474 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946988 chr9:135946986 synonymous SNV . 0 19 hm5C_associated_SNPs_31090 0 0 0 0 0 exosome 1 0.500231645263455 1 0.999536709473089 hm5C_site_31218 DeepMRMD:1;iRNA_m5C:0.999536709473089 31219 chr9 135946986 135946986 1 + G C PAAD 135946989 + 135946969 135947009 41 CCCACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGG CCCACGGGTGACTCCGGCGCCCCCCCCGTGACCCCCACGGG < 41bp 1 0.180462291248897 1 0.091057687997818 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946989 chr9:135946986 synonymous SNV . 0 18 hm5C_associated_SNPs_31091 0 0 0 0 0 exosome 1 0.500241085941082 1 0.999517828117836 hm5C_site_31219 DeepMRMD:1;iRNA_m5C:0.999517828117836 31220 chr9 135946986 135946986 1 + G C PAAD 135946990 + 135946970 135947010 41 CCACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGT CCACGGGTGACTCCGGCGCCCCCCCCGTGACCCCCACGGGT < 41bp 1 0.178504184591648 1 0.0729346573352814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946990 chr9:135946986 synonymous SNV . 0 17 hm5C_associated_SNPs_31092 0 0 0 0 0 exosome 1 0.500319152435273 1 0.999361695129453 hm5C_site_31220 DeepMRMD:1;iRNA_m5C:0.999361695129453 31221 chr9 135946986 135946986 1 + G C PAAD 135946991 + 135946971 135947011 41 CACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTG CACGGGTGACTCCGGCGCCCCCCCCGTGACCCCCACGGGTG < 41bp 1 0.321918988328454 1 0.122355073690414 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946991 chr9:135946986 synonymous SNV . 0 16 hm5C_associated_SNPs_31093 0 0 0 0 0 exosome 1 0.500231644669821 1 0.999536710660357 hm5C_site_31221 DeepMRMD:1;iRNA_m5C:0.999536710660357 31222 chr9 135946986 135946986 1 + G C PAAD 135946992 + 135946972 135947012 41 ACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGA ACGGGTGACTCCGGCGCCCCCCCCGTGACCCCCACGGGTGA < 41bp 1 0.688327181338635 1 0.458667635917664 experiment 0.62334563732273 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946992 chr9:135946986 synonymous SNV . 0 15 hm5C_associated_SNPs_31094 0 0 0 0 0 exosome 1 0.500220816491353 1 0.999558367017294 hm5C_site_31222 DeepMRMD:1;iRNA_m5C:0.999558367017294 31223 chr9 135946986 135946986 1 + G C PAAD 135946993 + 135946973 135947013 41 CGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGAC CGGGTGACTCCGGCGCCCCCCCCGTGACCCCCACGGGTGAC < 41bp 1 0.528375846294533 1 0.249051988124847 experiment 0.943248307410935 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946993 chr9:135946986 synonymous SNV . 0 14 hm5C_associated_SNPs_31095 0 0 0 0 0 exosome 1 0.50023175063445 1 0.9995364987311 hm5C_site_31223 DeepMRMD:1;iRNA_m5C:0.9995364987311 31224 chr9 135946986 135946986 1 + G C PAAD 135946994 + 135946974 135947014 41 GGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGACT GGGTGACTCCGGCGCCCCCCCCGTGACCCCCACGGGTGACT < 41bp 1 0.274076850013047 1 0.638279855251312 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946994 chr9:135946986 synonymous SNV . 0 13 hm5C_associated_SNPs_31096 0 0 0 0 0 exosome 1 0.500231644194684 0.723440289497376 0.999536711610631 hm5C_site_31224 DeepMRMD:0.723440289497376;iRNA_m5C:0.999536711610631 31225 chr9 135946986 135946986 1 + G C PAAD 135947000 + 135946980 135947020 41 CTCCGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGA CTCCGGCGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGA < 41bp 1 0.261216982264392 1 0.0522699356079102 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947000 chr9:135946986 synonymous SNV . 0 7 hm5C_associated_SNPs_31098 0 0 0 0 0 exosome 1 0.500304216959065 1 0.99939156608187 hm5C_site_31225 DeepMRMD:1;iRNA_m5C:0.99939156608187 31226 chr9 135946986 135946986 1 + G C PAAD 135947001 + 135946981 135947021 41 TCCGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGAC TCCGGCGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGAC < 41bp 1 0.681405857392087 1 0.103768825531006 experiment 0.637188285215827 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947001 chr9:135946986 synonymous SNV . 0 6 hm5C_associated_SNPs_31099 0 0 0 0 0 exosome 1 0.50023169316283 1 0.99953661367434 hm5C_site_31226 DeepMRMD:1;iRNA_m5C:0.99953661367434 31227 chr9 135946986 135946986 1 + G C PAAD 135947002 + 135946982 135947022 41 CCGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACC CCGGCGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACC < 41bp 1 0.305770381619507 1 0.0670421123504639 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947002 chr9:135946986 synonymous SNV . 0 5 hm5C_associated_SNPs_31100 0 0 0 0 0 exosome 1 0.502487786901171 1 0.995024426197658 hm5C_site_31227 DeepMRMD:1;iRNA_m5C:0.995024426197658 31228 chr9 135946986 135946986 1 + G C PAAD 135947003 + 135946983 135947023 41 CGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACCG CGGCGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACCG < 41bp 1 0.564736391911509 1 0.281846761703491 experiment 0.870527216176981 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947003 chr9:135946986 synonymous SNV . 0 4 hm5C_associated_SNPs_31101 0 0 0 0 0 exosome 1 0.500231680779596 1 0.999536638440807 hm5C_site_31228 DeepMRMD:1;iRNA_m5C:0.999536638440807 31229 chr3 186302256 186302256 1 + C T PAAD 186302261 + 186302241 186302281 41 TCACCAGGCCAGGAGCGAAGCTATGGAAGAAAGGGGAAGGG TCACCAGGCCAGGAGTGAAGCTATGGAAGAAAGGGGAAGGG < 41bp 1 0.466421611284846 1 0.192480564117432 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302261 chr3:186302256 nonsynonymous SNV 0.995 1 16 hm5C_associated_SNPs_31103 0 0 1 0 1 Ribosome 1 0.500231137231988 1 0.999537725536023 hm5C_site_31229 DeepMRMD:1;iRNA_m5C:0.999537725536023 31230 chr19 48254262 48254262 1 + C T PAAD 48254270 + 48254250 48254290 41 CCCCGGGAGGTGCGCAGGGCCCAGGCCCGGCTCCTCAACCC CCCCGGGAGGTGTGCAGGGCCCAGGCCCGGCTCCTCAACCC < 41bp 1 0.572226022090048 1 0.466518968343735 experiment 0.855547955819903 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254270 chr19:48254262 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_31105 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31230 DeepMRMD:1;iRNA_m5C:0.999536712157815 31231 chr19 48254262 48254262 1 + C T PAAD 48254275 + 48254255 48254295 41 GGAGGTGCGCAGGGCCCAGGCCCGGCTCCTCAACCCTTCTG GGAGGTGTGCAGGGCCCAGGCCCGGCTCCTCAACCCTTCTG < 41bp 1 0.677348569229529 1 0.654629588127136 experiment 0.645302861540943 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254275 chr19:48254262 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_31106 0 0 1 0 0 unknown 1 0.500231643921092 0.690740823745728 0.999536712157815 hm5C_site_31231 DeepMRMD:0.690740823745728;iRNA_m5C:0.999536712157815 31232 chr19 48254262 48254262 1 + C T PAAD 48254276 + 48254256 48254296 41 GAGGTGCGCAGGGCCCAGGCCCGGCTCCTCAACCCTTCTGC GAGGTGTGCAGGGCCCAGGCCCGGCTCCTCAACCCTTCTGC < 41bp 1 0.25970421394035 1 0.475737065076828 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254276 chr19:48254262 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_31107 0 0 1 0 0 unknown 1 0.50023164392127 1 0.99953671215746 hm5C_site_31232 DeepMRMD:1;iRNA_m5C:0.99953671215746 31233 chr19 48254262 48254262 1 + C T PAAD 48254277 + 48254257 48254297 41 AGGTGCGCAGGGCCCAGGCCCGGCTCCTCAACCCTTCTGCA AGGTGTGCAGGGCCCAGGCCCGGCTCCTCAACCCTTCTGCA < 41bp 1 0.386445674498717 1 0.243677914142609 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254277 chr19:48254262 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_31108 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31233 DeepMRMD:1;iRNA_m5C:0.999536712157815 31234 chr19 48254262 48254262 1 + C T PAAD 48254280 + 48254260 48254300 41 TGCGCAGGGCCCAGGCCCGGCTCCTCAACCCTTCTGCAACA TGTGCAGGGCCCAGGCCCGGCTCCTCAACCCTTCTGCAACA < 41bp 1 0.440343207228198 1 0.421690046787262 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254280 chr19:48254262 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_31109 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_31234 DeepMRMD:1;iRNA_m5C:0.999536712157815 31235 chr4 114161720 114161720 1 + C T PAAD 114161710 + 114161690 114161730 41 TGGCAACTCTTCTTCTAAACCGGGGAGCTGCTGTGGACTTC TGGCAACTCTTCTTCTAAACCGGGGAGCTGTTGTGGACTTC < 41bp 1 0.623578389857043 1 0.777947306632996 experiment 0.752843220285914 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ANK2 ENSG00000145362 CDS Human protein_coding chr4:114161710 chr4:114161720 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_31110 0 0 0 0 0 Endoplasmic reticulum 1 0.50023165207819 0.444105386734008 0.99953669584362 hm5C_site_31235 DeepMRMD:0.444105386734008;iRNA_m5C:0.99953669584362 31236 chr1 979372 979372 1 + C T PAAD 979380 + 979360 979400 41 GCAGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCGAGC GCAGACACAGATTGAGGAGGCCCGGGCAGGGCCGTGCGAGC < 41bp 1 0.423301107358244 1 0.54153972864151 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979380 chr1:979372 synonymous SNV . 0 13 hm5C_associated_SNPs_31111 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643919389 0.91692054271698 0.999536712161223 hm5C_site_31236 DeepMRMD:0.91692054271698;iRNA_m5C:0.999536712161223 31237 chr1 979372 979372 1 + C T PAAD 979381 + 979361 979401 41 CAGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCGAGCA CAGACACAGATTGAGGAGGCCCGGGCAGGGCCGTGCGAGCA < 41bp 1 0.378153892920758 1 0.366935878992081 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979381 chr1:979372 synonymous SNV . 0 12 hm5C_associated_SNPs_31112 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643929633 1 0.999536712140735 hm5C_site_31237 DeepMRMD:1;iRNA_m5C:0.999536712140735 31238 chr1 979372 979372 1 + C T PAAD 979382 + 979362 979402 41 AGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCGAGCAG AGACACAGATTGAGGAGGCCCGGGCAGGGCCGTGCGAGCAG < 41bp 1 0.652156087288957 1 0.74472051858902 experiment 0.695687825422086 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979382 chr1:979372 synonymous SNV . 0 11 hm5C_associated_SNPs_31113 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164365941 0.51055896282196 0.999536712681179 hm5C_site_31238 DeepMRMD:0.51055896282196;iRNA_m5C:0.999536712681179 31239 chr1 979372 979372 1 + C T PAAD 979391 + 979371 979411 41 TCGAGGAGGCCCGGGCAGGGCCGTGCGAGCAGGGTAGGCCG TTGAGGAGGCCCGGGCAGGGCCGTGCGAGCAGGGTAGGCCG < 41bp 1 0.272338388147834 1 0.337813377380371 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979391 chr1:979372 synonymous SNV . 0 2 hm5C_associated_SNPs_31114 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31239 DeepMRMD:1;iRNA_m5C:0.999536712157815 31240 chr1 979372 979372 1 + C T PAAD 979392 + 979372 979412 41 CGAGGAGGCCCGGGCAGGGCCGTGCGAGCAGGGTAGGCCGG TGAGGAGGCCCGGGCAGGGCCGTGCGAGCAGGGTAGGCCGG < 41bp 1 0.317953768210979 1 0.511698365211487 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:979392 chr1:979372 synonymous SNV . 0 1 hm5C_associated_SNPs_31115 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.976603269577026 0.999536712157815 hm5C_site_31240 DeepMRMD:0.976603269577026;iRNA_m5C:0.999536712157815 31241 chr7 128407587 128407587 1 + C T PAAD 128407572 + 128407552 128407592 41 GGGTAAAGACAGAGCGAGAGCAGTTTGTTGAGTTTCGGGAT GGGTAAAGACAGAGCGAGAGCAGTTTGTTGAGTTTTGGGAT < 41bp 1 0.42436168161938 1 0.118016600608826 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407572 chr7:128407587 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_31116 0 0 1 0 1 Ribosome 1 0.500231643919094 1 0.999536712161813 hm5C_site_31241 DeepMRMD:1;iRNA_m5C:0.999536712161813 31242 chr7 128407587 128407587 1 + C T PAAD 128407598 + 128407578 128407618 41 GTTGAGTTTCGGGATAAGAACCGTGATGGGAAGATGGACAA GTTGAGTTTTGGGATAAGAACCGTGATGGGAAGATGGACAA < 41bp 1 0.509703629758366 1 0.125372111797333 experiment 0.980592740483269 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALU ENSG00000128595 CDS Human protein_coding chr7:128407598 chr7:128407587 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_31117 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31242 DeepMRMD:1;iRNA_m5C:0.999536712157815 31243 chr2 113315647 113315647 1 + G A PAAD 113315643 + 113315623 113315663 41 ACCTTTTTGCTACTGGGAATCTGCGTTCTAAAACAGGTAAA ACCTTTTTGCTACTGGGAATCTGCATTCTAAAACAGGTAAA < 41bp 1 0.68804439639677 1 0.900206029415131 experiment 0.623911207206459 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113315643 chr2:113315647 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_31118 0 0 1 0 1 Nucleus 1 0.500231643980053 0.199587941169738 0.999536712039894 hm5C_site_31243 DeepMRMD:0.199587941169738;iRNA_m5C:0.999536712039894 31244 chr11 86518792 86518792 1 + G A PAAD 86518805 + 86518785 86518825 41 GCATACCGCCTCCCTGTCGTCTTGCCCCAGTCTACCCTCAA GCATACCACCTCCCTGTCGTCTTGCCCCAGTCTACCCTCAA < 41bp 1 0.235491246790451 1 0.195033073425293 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRSS23 ENSG00000150687 CDS Human protein_coding chr11:86518805 chr11:86518792 nonsynonymous SNV 0.991 1 8 hm5C_associated_SNPs_31119 0 0 1 0 0 Ribosome 1 0.500231689516427 1 0.999536620967145 hm5C_site_31244 DeepMRMD:1;iRNA_m5C:0.999536620967145 31245 chr19 10402269 10402269 1 + C T PAAD 10402280 + 10402260 10402300 41 CGTGCGAGCCTCACGCTGACCCTGCTGCGGGGCGCCCAGGA CGTGCGAGCTTCACGCTGACCCTGCTGCGGGGCGCCCAGGA < 41bp 1 0.19716536966456 1 0.289967954158783 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10402280 chr19:10402269 nonsynonymous SNV 0.356 4 10 hm5C_associated_SNPs_31120 0 0 1 0 0 Endoplasmic reticulum 1 0.50023173691062 1 0.999536526178761 hm5C_site_31245 DeepMRMD:1;iRNA_m5C:0.999536526178761 31246 chr19 10402269 10402269 1 + C T PAAD 10402281 + 10402261 10402301 41 GTGCGAGCCTCACGCTGACCCTGCTGCGGGGCGCCCAGGAG GTGCGAGCTTCACGCTGACCCTGCTGCGGGGCGCCCAGGAG < 41bp 1 0.661311456461445 1 0.683787822723389 experiment 0.67737708707711 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10402281 chr19:10402269 nonsynonymous SNV 0.356 4 9 hm5C_associated_SNPs_31121 0 0 1 0 0 Endoplasmic reticulum 1 0.500333080657599 0.632424354553222 0.999333838684802 hm5C_site_31246 DeepMRMD:0.632424354553222;iRNA_m5C:0.999333838684802 31247 chr6 168363200 168363200 1 + C T PAAD 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGTGCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.260926837542592 1 0.45601612329483 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363200 nonsynonymous SNV 0.005 3 19 hm5C_associated_SNPs_31122 0 0 1 0 3 unknown 1 0.50023164391991 1 0.999536712160181 hm5C_site_31247 DeepMRMD:1;iRNA_m5C:0.999536712160181 31248 chr16 697444 697444 1 + T G PAAD 697463 + 697443 697483 41 GTGTGAATGGCCGGCGGGCCCCCTCCACGTCCCCATCCTTC GGGTGAATGGCCGGCGGGCCCCCTCCACGTCCCCATCCTTC < 41bp 1 0.124961766384601 1 0.059614360332489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697463 chr16:697444 synonymous SNV . 0 2 hm5C_associated_SNPs_31124 0 0 1 0 1 Cytosol 1 0.500231643920148 1 0.999536712159704 hm5C_site_31248 DeepMRMD:1;iRNA_m5C:0.999536712159704 31249 chr8 22064400 22064400 1 + G A PAAD 22064413 + 22064393 22064433 41 ACCAGTGGTACCATCACCAGCCCCAACTGGCCTGACAAGTA ACCAGTGATACCATCACCAGCCCCAACTGGCCTGACAAGTA < 41bp 1 0.181374695471888 1 0.45522552728653 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064413 chr8:22064400 nonsynonymous SNV 0.998 3 8 hm5C_associated_SNPs_31125 0 0 0 0 2 Endoplasmic reticulum 1 0.500231636239378 1 0.999536727521244 hm5C_site_31249 DeepMRMD:1;iRNA_m5C:0.999536727521244 31250 chr17 40695695 40695695 1 + C A PAAD 40695685 + 40695665 40695705 41 TCCCTCCCTGGCCACCAGCCCCGCCTTCCGCTACGACCTGC TCCCTCCCTGGCCACCAGCCCCGCCTTCCGATACGACCTGC < 41bp 1 0.260622799999297 1 0.0793246030807495 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NAGLU ENSG00000108784 CDS Human protein_coding chr17:40695685 chr17:40695695 synonymous SNV . 0 31 hm5C_associated_SNPs_31126 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921536 1 0.999536712156929 hm5C_site_31250 DeepMRMD:1;iRNA_m5C:0.999536712156929 31251 chr17 40695695 40695695 1 + C A PAAD 40695702 + 40695682 40695722 41 GCCCCGCCTTCCGCTACGACCTGCTGGACCTCACTCGGCAG GCCCCGCCTTCCGATACGACCTGCTGGACCTCACTCGGCAG < 41bp 1 0.453837443208948 1 0.162435799837112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAGLU ENSG00000108784 CDS Human protein_coding chr17:40695702 chr17:40695695 synonymous SNV . 0 14 hm5C_associated_SNPs_31127 0 0 1 0 0 Endoplasmic reticulum 1 0.500231642124259 1 0.999536715751481 hm5C_site_31251 DeepMRMD:1;iRNA_m5C:0.999536715751481 31252 chr16 70589068 70589068 1 + G A PAAD 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC AGCGACAAGTGGTGATTACCCTGACAGGAGGAGAGCTGGTC < 41bp 1 0.412032776882949 1 0.157458662986755 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589068 nonsynonymous SNV 0.999 1 18 hm5C_associated_SNPs_31128 0 0 1 0 1 Cytosol 1 0.500231638771855 1 0.999536722456291 hm5C_site_31252 DeepMRMD:1;iRNA_m5C:0.999536722456291 31253 chr16 70589068 70589068 1 + G A PAAD 70589086 + 70589066 70589106 41 TTGCCCTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGAT TTACCCTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGAT < 41bp 1 0.215759990032742 1 0.159055382013321 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589086 chr16:70589068 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_31130 0 0 1 0 1 Cytosol 1 0.500231643922695 1 0.999536712154609 hm5C_site_31253 DeepMRMD:1;iRNA_m5C:0.999536712154609 31254 chr3 47041693 47041693 1 + C T PAAD 47041673 + 47041653 47041693 41 CCTTTGACCTGGGCCTGGAACGGTCTAGTGTAGGATCAGGC CCTTTGACCTGGGCCTGGAACGGTCTAGTGTAGGATCAGGT < 41bp 1 0.0918587931448748 1 0.611271500587463 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041673 chr3:47041693 synonymous SNV . 0 41 hm5C_associated_SNPs_31131 0 0 1 0 1 Nucleus 1 0.500231643921092 0.777456998825074 0.999536712157815 hm5C_site_31254 DeepMRMD:0.777456998825074;iRNA_m5C:0.999536712157815 31255 chr16 449418 449418 1 + C T PAAD 449415 + 449395 449435 41 TTGCCGAGCACTACCAGGACCTGCGGAGGAAGCCCTTCTAC TTGCCGAGCACTACCAGGACCTGTGGAGGAAGCCCTTCTAC < 41bp 1 0.536916388501197 1 0.364969730377197 experiment 0.926167222997606 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NME4 ENSG00000103202 CDS Human protein_coding chr16:449415 chr16:449418 nonsynonymous SNV 0.103 2 24 hm5C_associated_SNPs_31132 0 0 1 0 1 Cytosol 1 0.500231636781342 1 0.999536726437315 hm5C_site_31255 DeepMRMD:1;iRNA_m5C:0.999536726437315 31256 chr16 14403174 14403174 1 + G A PAAD 14403172 + 14403152 14403192 41 AAATGAGGGACTTTTGGGGGCAGATGTGTTTCCATTCCACT AAATGAGGGACTTTTGGGGGCAAATGTGTTTCCATTCCACT < 41bp 1 0.245897285545366 1 0.346992760896683 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR365A ENSG00000199130 ncRNA_exonic Human miRNA chr16:14403172 chr16:14403174 . . 0 23 hm5C_associated_SNPs_31133 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31256 DeepMRMD:1;iRNA_m5C:0.999536712157815 31257 chr6 118015211 118015211 1 + G A PAAD 118015223 + 118015203 118015243 41 GCCATTTGGCAGTGAAGGTGCTGTCTCCGGAAGATGGAAAA GCCATTTGACAGTGAAGGTGCTGTCTCCGGAAGATGGAAAA < 41bp 1 0.155471351598166 1 0.128177493810654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUS1 ENSG00000153989 CDS Human protein_coding chr6:118015223 chr6:118015211 nonsynonymous SNV 0.995 0 9 hm5C_associated_SNPs_31136 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643919891 1 0.999536712160219 hm5C_site_31257 DeepMRMD:1;iRNA_m5C:0.999536712160219 31258 chr17 34147406 34147406 1 + C T PAAD 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATAGCCAGCAACCATATAATAATCAGGGA < 41bp 1 0.189593889859093 1 0.378010183572769 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147406 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_31137 0 0 1 2 2 Cytosol 1 0.500231643921468 1 0.999536712157064 hm5C_site_31258 DeepMRMD:1;iRNA_m5C:0.999536712157064 31259 chr11 9116799 9116799 1 + A G PAAD 9116779 + 9116759 9116799 41 GTGGTGCTGTCCATGGACAGCAGCCGCTCCCTGGACATGGA GTGGTGCTGTCCATGGACAGCAGCCGCTCCCTGGACATGGG < 41bp 1 0.490670459172864 1 0.341882705688477 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT8P41 ENSG00000213538 ncRNA_exonic Human processed_pseudogene chr11:9116779 chr11:9116799 . . 0 41 hm5C_associated_SNPs_31138 0 0 0 0 0 unknown 1 0.500231643920246 1 0.999536712159507 hm5C_site_31259 DeepMRMD:1;iRNA_m5C:0.999536712159507 31260 chr6 7578046 7578046 1 + G T PAAD 7578027 + 7578007 7578047 41 TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGGA TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGTA < 41bp 1 0.268185467475351 1 0.326664119958878 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DSP ENSG00000096696 CDS Human protein_coding chr6:7578027 chr6:7578046 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_31139 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_31260 DeepMRMD:1;iRNA_m5C:0.999536712157815 31261 chr17 78335544 78335544 1 + G T PAAD 78335559 + 78335539 78335579 41 CCCAAGAAGTTCGTGGACATCTTTCAGCAGACTCCTCTGGG CCCAATAAGTTCGTGGACATCTTTCAGCAGACTCCTCTGGG < 41bp 1 0.0289496427549055 1 0.061883419752121 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78335559 chr17:78335544 nonsynonymous SNV 0.002 1 6 hm5C_associated_SNPs_31140 0 0 1 0 1 Nucleus 1 0.5002316439211 1 0.9995367121578 hm5C_site_31261 DeepMRMD:1;iRNA_m5C:0.9995367121578 31262 chr16 89971399 89971399 1 + T C PAAD 89971393 + 89971373 89971413 41 GAACCTGTACCTTGGGAGGTCACACTTTCTCTGGAAAGAGC GAACCTGTACCTTGGGAGGTCACACTCTCTCTGGAAAGAGC < 41bp 1 0.189208903881589 1 0.154132038354874 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89971393 chr16:89971399 nonsynonymous SNV 0.927 0 27 hm5C_associated_SNPs_31141 0 0 1 0 1 Cytosol 1 0.500231662164285 1 0.99953667567143 hm5C_site_31262 DeepMRMD:1;iRNA_m5C:0.99953667567143 31263 chr10 114918429 114918429 1 + A G PAAD 114918428 + 114918408 114918448 41 TTTGTTCTTTTTTTTCAGAACACAGCGAATGTTTCCTAAAT TTTGTTCTTTTTTTTCAGAACGCAGCGAATGTTTCCTAAAT < 41bp 1 0.328321752621418 1 0.380167990922928 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114918428 chr10:114918429 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_31142 0 0 1 0 2 Nucleus 1 0.500231643199109 1 0.999536713601781 hm5C_site_31263 DeepMRMD:1;iRNA_m5C:0.999536713601781 31264 chr16 70589061 70589061 1 + G A PAAD 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC AGCGACAAGTAGTGATTGCCCTGACAGGAGGAGAGCTGGTC < 41bp 1 0.28463500693014 1 0.114905893802643 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589061 synonymous SNV . 0 11 hm5C_associated_SNPs_31143 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31264 DeepMRMD:1;iRNA_m5C:0.999536712157815 31265 chr7 36464161 36464161 1 + G A PAAD 36464155 + 36464135 36464175 41 TAATGCTTTATTTTTCCAGGCAAGATGTATCCAATGACTTT TAATGCTTTATTTTTCCAGGCAAGATATATCCAATGACTTT < 41bp 1 0.370863307335349 1 0.190171837806702 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36464155 chr7:36464161 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_31144 0 0 1 0 2 Nucleus 1 0.500231643917171 1 0.999536712165659 hm5C_site_31265 DeepMRMD:1;iRNA_m5C:0.999536712165659 31266 chr3 128998687 128998687 1 + T C PAAD 128998697 + 128998677 128998717 41 CCCTGATAAGTACTGCCCCTCTTACAACAAGAGTCCTCAAT CCCTGATAAGCACTGCCCCTCTTACAACAAGAGTCCTCAAT < 41bp 1 0.0794513518111383 1 0.0357137322425842 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMCES ENSG00000183624 CDS Human protein_coding chr3:128998697 chr3:128998687 nonsynonymous SNV 0.777 4 11 hm5C_associated_SNPs_31145 0 0 1 0 1 Ribosome 1 0.500231643921113 1 0.999536712157775 hm5C_site_31266 DeepMRMD:1;iRNA_m5C:0.999536712157775 31267 chr16 3076711 3076711 1 + A G PAAD 3076699 + 3076679 3076719 41 GAGGGTCCTCCGGGGCCACACAGACTACATCCACTGCCTGG GAGGGTCCTCCGGGGCCACACAGACTACATCCGCTGCCTGG < 41bp 1 0.586545913601778 1 0.586885452270508 experiment 0.826908172796443 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control THOC6 ENSG00000131652 CDS Human protein_coding chr16:3076699 chr16:3076711 nonsynonymous SNV 0.999 3 33 hm5C_associated_SNPs_31147 0 0 1 0 2 Ribosome 1 0.500231643921343 0.826229095458984 0.999536712157314 hm5C_site_31267 DeepMRMD:0.826229095458984;iRNA_m5C:0.999536712157314 31268 chr9 91083296 91083296 1 + G A PAAD 91083287 + 91083267 91083307 41 TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCGATG TTTTTTTTTTTAATCCCCAGCGACATCTCAAATCAGCGATG < 41bp 1 0.349672445573045 1 0.543424606323242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91083287 chr9:91083296 nonsynonymous SNV 0.620 1 30 hm5C_associated_SNPs_31148 0 0 1 0 1 Cytosol 1 0.500231643783488 0.913150787353516 0.999536712433024 hm5C_site_31268 DeepMRMD:0.913150787353516;iRNA_m5C:0.999536712433024 31269 chr17 48185696 48185696 1 + C T PAAD 48185699 + 48185679 48185719 41 GCAGAATGCCATGAGGGCGACTGTGGAAAGCCATGAGTCCA GCAGAATGCCATGAGGGTGACTGTGGAAAGCCATGAGTCCA < 41bp 1 0.520170147500245 1 0.122014045715332 experiment 0.959659704999509 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185699 chr17:48185696 nonsynonymous SNV 0.987 4 18 hm5C_associated_SNPs_31149 0 0 1 0 2 Ribosome 1 0.500231643857563 1 0.999536712284873 hm5C_site_31269 DeepMRMD:1;iRNA_m5C:0.999536712284873 31270 chr19 971939 971939 1 + C T PAAD 971936 + 971916 971956 41 TCTGCTCCCAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAG TCTGCTCCCAACAAAGGAGGCGGTGGCGGCGGCGGCAGCAG < 41bp 1 0.628395413407981 1 0.863049626350403 experiment 0.743209173184039 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARID3A ENSG00000116017 CDS Human protein_coding chr19:971936 chr19:971939 synonymous SNV . 0 24 hm5C_associated_SNPs_31150 0 0 0 0 1 Cytosol 1 0.500231643921148 0.273900747299194 0.999536712157704 hm5C_site_31270 DeepMRMD:0.273900747299194;iRNA_m5C:0.999536712157704 31271 chr12 6979528 6979528 1 + T G PAAD 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAG < 41bp 1 0.643608772652902 1 0.854867100715637 experiment 0.712782454694196 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979528 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_31151 0 0 0 0 1 Ribosome 1 0.50023164395295 0.290265798568726 0.999536712094101 hm5C_site_31271 DeepMRMD:0.290265798568726;iRNA_m5C:0.999536712094101 31272 chr1 233514930 233514930 1 + C T PAAD 233514944 + 233514924 233514964 41 TGGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG TGGGTGTACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG < 41bp 1 0.274932549146924 1 0.0459144711494446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233514944 chr1:233514930 synonymous SNV . 0 7 hm5C_associated_SNPs_31152 0 0 1 0 0 unknown 1 0.500231643921115 1 0.99953671215777 hm5C_site_31272 DeepMRMD:1;iRNA_m5C:0.99953671215777 31273 chr12 57539109 57539109 1 + G T PAAD 57539127 + 57539107 57539147 41 GAGCACGCGGCAGACCACAGCCATGGACTTCAGCTATGCCA GATCACGCGGCAGACCACAGCCATGGACTTCAGCTATGCCA < 41bp 1 0.0573043578345522 1 0.13197660446167 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57539127 chr12:57539109 nonsynonymous SNV 0.136 2 3 hm5C_associated_SNPs_31153 0 0 0 0 1 Exosome 1 0.500231642872265 1 0.999536714255471 hm5C_site_31273 DeepMRMD:1;iRNA_m5C:0.999536714255471 31274 chr3 39126162 39126162 1 + T G PAAD 39126143 + 39126123 39126163 41 TTTCTTTTGATAGATGTTAACTATTACTTTGGATGAAAGTG TTTCTTTTGATAGATGTTAACTATTACTTTGGATGAAAGGG < 41bp 1 0.101287410872855 1 0.139548510313034 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39126143 chr3:39126162 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_31155 0 0 1 0 2 Ribosome 1 0.500231699232692 1 0.999536601534615 hm5C_site_31274 DeepMRMD:1;iRNA_m5C:0.999536601534615 31275 chr3 196304505 196304505 1 + C T PAAD 196304496 + 196304476 196304516 41 GGAAGTGTGGTGGGAGGGCCCTCTGGGCACTGTGGCAGTGA GGAAGTGTGGTGGGAGGGCCCTCTGGGCATTGTGGCAGTGA < 41bp 1 0.674452144343958 1 0.26748514175415 experiment 0.651095711312085 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FBXO45 ENSG00000174013 CDS Human protein_coding chr3:196304496 chr3:196304505 nonsynonymous SNV 0.999 4 30 hm5C_associated_SNPs_31156 0 0 1 0 0 Cytosol 1 0.500231644271134 1 0.999536711457732 hm5C_site_31275 DeepMRMD:1;iRNA_m5C:0.999536711457732 31276 chr4 166254711 166254711 1 + C A PAAD 166254694 + 166254674 166254714 41 CATGGGGATCCCTTATAGTTCATGAAGCCCTTTATTTCTTA CATGGGGATCCCTTATAGTTCATGAAGCCCTTTATTTATTA < 41bp 1 0.601646641427313 1 0.0392080247402191 experiment 0.796706717145373 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166254694 chr4:166254711 nonsynonymous SNV 0.992 1 38 hm5C_associated_SNPs_31157 0 0 1 0 1 Ribosome 1 0.500231643921098 1 0.999536712157804 hm5C_site_31276 DeepMRMD:1;iRNA_m5C:0.999536712157804 31277 chr6 33169572 33169572 1 + C T PAAD 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTCTTTCTTATCCCCGTGGA < 41bp 1 0.17381318105984 1 0.0299323797225952 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169572 synonymous SNV . 0 27 hm5C_associated_SNPs_31158 0 0 1 0 2 Ribosome 1 0.500310176080633 1 0.999379647838734 hm5C_site_31277 DeepMRMD:1;iRNA_m5C:0.999379647838734 31278 chr10 17277377 17277377 1 + C A PAAD 17277369 + 17277349 17277389 41 TTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGAGCAGG TTGCCACCTACAGGAAGCTGCTGGAAGGAGAGGAGAGCAGG < 41bp 1 0.694288477407889 1 0.553130865097046 experiment 0.611423045184221 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277369 chr10:17277377 synonymous SNV . 0 29 hm5C_associated_SNPs_31159 0 0 1 1 1 Ribosome 1 0.500231645580785 0.893738269805908 0.999536708838429 hm5C_site_31278 DeepMRMD:0.893738269805908;iRNA_m5C:0.999536708838429 31279 chr10 17277377 17277377 1 + C A PAAD 17277386 + 17277366 17277406 41 CTGCTGGAAGGCGAGGAGAGCAGGTAGGGAACTCAGACTTG CTGCTGGAAGGAGAGGAGAGCAGGTAGGGAACTCAGACTTG < 41bp 1 0.620624362997298 1 0.47293284535408 experiment 0.758751274005403 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277386 chr10:17277377 synonymous SNV . 0 12 hm5C_associated_SNPs_31160 0 0 1 1 1 Ribosome 1 0.500231804123982 1 0.999536391752036 hm5C_site_31279 DeepMRMD:1;iRNA_m5C:0.999536391752036 31280 chr20 42695431 42695431 1 + A G PAAD 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAG < 41bp 1 0.444720306564623 1 0.112162441015244 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695431 nonsynonymous SNV 0.944 0 41 hm5C_associated_SNPs_31161 0 0 0 0 2 exosome 1 0.500231641594976 1 0.999536716810049 hm5C_site_31280 DeepMRMD:1;iRNA_m5C:0.999536716810049 31281 chr12 132334409 132334409 1 + G A PAAD 132334394 + 132334374 132334414 41 ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCGACTTC ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCAACTTC < 41bp 1 0.23353055060284 1 0.0622804760932922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334394 chr12:132334409 nonsynonymous SNV 0.972 2 36 hm5C_associated_SNPs_31162 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31281 DeepMRMD:1;iRNA_m5C:0.999536712157815 31282 chr17 72239532 72239532 1 + C T PAAD 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGTTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC < 41bp 1 0.129637447425553 1 0.0502655804157257 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239532 nonsynonymous SNV 0.989 1 7 hm5C_associated_SNPs_31163 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31282 DeepMRMD:1;iRNA_m5C:0.999536712157815 31283 chr9 135942552 135942552 1 + C T PAAD 135942539 + 135942519 135942559 41 GGCCCAGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGC GGCCCAGTGTCTGAAGGTTACTGATCCCCGAGCTCTGACGC < 41bp 1 0.583598649038857 1 0.0287289619445801 experiment 0.832802701922285 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942539 chr9:135942552 synonymous SNV . 0 34 hm5C_associated_SNPs_31164 0 0 1 0 1 exosome 1 0.500231643922702 1 0.999536712154595 hm5C_site_31283 DeepMRMD:1;iRNA_m5C:0.999536712154595 31284 chr9 135942552 135942552 1 + C T PAAD 135942544 + 135942524 135942564 41 AGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCC AGTGTCTGAAGGTTACTGATCCCCGAGCTCTGACGCTGGCC < 41bp 1 0.37273259795368 1 0.0644303858280182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942544 chr9:135942552 synonymous SNV . 0 29 hm5C_associated_SNPs_31165 0 0 1 0 1 exosome 1 0.500231643962525 1 0.999536712074951 hm5C_site_31284 DeepMRMD:1;iRNA_m5C:0.999536712074951 31285 chr9 135942552 135942552 1 + C T PAAD 135942545 + 135942525 135942565 41 GTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCT GTGTCTGAAGGTTACTGATCCCCGAGCTCTGACGCTGGCCT < 41bp 1 0.670988031755233 1 0.0818633437156677 experiment 0.658023936489534 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942545 chr9:135942552 synonymous SNV . 0 28 hm5C_associated_SNPs_31166 0 0 1 0 1 exosome 1 0.500232137926686 1 0.999535724146628 hm5C_site_31285 DeepMRMD:1;iRNA_m5C:0.999535724146628 31286 chr9 135942552 135942552 1 + C T PAAD 135942546 + 135942526 135942566 41 TGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTA TGTCTGAAGGTTACTGATCCCCGAGCTCTGACGCTGGCCTA < 41bp 1 0.64435846875214 1 0.493568241596222 experiment 0.711283062495721 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942546 chr9:135942552 synonymous SNV . 0 27 hm5C_associated_SNPs_31167 0 0 1 0 1 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_31286 DeepMRMD:1;iRNA_m5C:0.999536712157814 31287 chr9 135942552 135942552 1 + C T PAAD 135942553 + 135942533 135942573 41 AGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG AGGTTACTGATCCCCGAGCTCTGACGCTGGCCTATAAGGTG < 41bp 1 0.428687501986409 1 0.352810949087143 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942553 chr9:135942552 synonymous SNV . 0 20 hm5C_associated_SNPs_31169 0 0 1 0 1 exosome 1 0.50023164258982 1 0.99953671482036 hm5C_site_31287 DeepMRMD:1;iRNA_m5C:0.99953671482036 31288 chr1 224380108 224380108 1 + T G PAAD 224380097 + 224380077 224380117 41 ACAATTCCTGGATAAAAGTACTGTATGATTTTGTGATGGAT ACAATTCCTGGATAAAAGTACTGTATGATTTGGTGATGGAT < 41bp 1 0.338135393932189 1 0.129823803901672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEGS1 ENSG00000143753 CDS Human protein_coding chr1:224380097 chr1:224380108 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_31170 0 0 1 0 1 Ribosome 1 0.500231643921081 1 0.999536712157839 hm5C_site_31288 DeepMRMD:1;iRNA_m5C:0.999536712157839 31289 chr4 154216605 154216605 1 + C T PAAD 154216623 + 154216603 154216643 41 AACGAGCTGGCCGACCAGGACTTCCCCTTGCACCCGCGGGA AATGAGCTGGCCGACCAGGACTTCCCCTTGCACCCGCGGGA < 41bp 1 0.137820432037104 1 0.0601442158222198 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154216623 chr4:154216605 synonymous SNV . 0 3 hm5C_associated_SNPs_31171 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_31289 DeepMRMD:1;iRNA_m5C:0.999536712157816 31290 chr5 34949740 34949740 1 + G A PAAD 34949743 + 34949723 34949763 41 GAGAGAAGAGATGGAGAGAGCGAGCACAAATGTGCCAAAAT GAGAGAAGAGATGGAGAAAGCGAGCACAAATGTGCCAAAAT < 41bp 1 0.566862438898142 1 0.830605745315552 experiment 0.866275122203716 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34949743 chr5:34949740 synonymous SNV . 0 18 hm5C_associated_SNPs_31172 0 0 0 0 2 Cytosol 1 0.500231374255038 0.338788509368896 0.999537251489923 hm5C_site_31290 DeepMRMD:0.338788509368896;iRNA_m5C:0.999537251489923 31291 chr16 1817158 1817158 1 + T C PAAD 1817164 + 1817144 1817184 41 CTCCAGATGGCCAGTGGGATCTGAGCAACTATCACCTAATG CTCCAGATGGCCAGCGGGATCTGAGCAACTATCACCTAATG < 41bp 1 0.528683065200284 1 0.436024248600006 experiment 0.942633869599431 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1817164 chr16:1817158 nonsynonymous SNV 0.996 4 15 hm5C_associated_SNPs_31173 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_31291 DeepMRMD:1;iRNA_m5C:0.999536712157815 31292 chr11 811728 811728 1 + G A PAAD 811709 + 811689 811729 41 CCTAATCCCTGCCGGTCCATCTGTGGCCTGCCAGGTTTCGC CCTAATCCCTGCCGGTCCATCTGTGGCCTGCCAGGTTTCAC < 41bp 1 0.339886553053265 1 0.264034748077393 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA52 ENSG00000199785 ncRNA_exonic Human snoRNA chr11:811709 chr11:811728 . . 0 40 hm5C_associated_SNPs_31174 0 0 1 0 1 unknown 1 0.500230505851982 1 0.999538988296035 hm5C_site_31292 DeepMRMD:1;iRNA_m5C:0.999538988296035 31293 chr11 811728 811728 1 + G A PAAD 811715 + 811695 811735 41 CCCTGCCGGTCCATCTGTGGCCTGCCAGGTTTCGCTTGTGG CCCTGCCGGTCCATCTGTGGCCTGCCAGGTTTCACTTGTGG < 41bp 1 0.0334614522982357 1 0.0570579767227173 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA52 ENSG00000199785 ncRNA_exonic Human snoRNA chr11:811715 chr11:811728 . . 0 34 hm5C_associated_SNPs_31175 0 0 1 0 1 unknown 1 0.500231643921061 1 0.999536712157878 hm5C_site_31293 DeepMRMD:1;iRNA_m5C:0.999536712157878 31294 chr11 811728 811728 1 + G A PAAD 811716 + 811696 811736 41 CCTGCCGGTCCATCTGTGGCCTGCCAGGTTTCGCTTGTGGA CCTGCCGGTCCATCTGTGGCCTGCCAGGTTTCACTTGTGGA < 41bp 1 0.117113898468017 1 0.0553843379020691 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA52 ENSG00000199785 ncRNA_exonic Human snoRNA chr11:811716 chr11:811728 . . 0 33 hm5C_associated_SNPs_31176 0 0 1 0 1 unknown 1 0.500231643912018 1 0.999536712175964 hm5C_site_31294 DeepMRMD:1;iRNA_m5C:0.999536712175964 31295 chr15 44581358 44581358 1 + A C PAAD 44581338 + 44581318 44581358 41 AACTACTGGAGCATCTCCTCCCGCCACGTCCTGCTTCAGGA AACTACTGGAGCATCTCCTCCCGCCACGTCCTGCTTCAGGC < 41bp 1 0.284403279293635 1 0.564074695110321 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CASC4 ENSG00000166734 CDS Human protein_coding chr15:44581338 chr15:44581358 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_31177 0 0 1 1 0 Ribosome 1 0.500231643910987 0.871850609779358 0.999536712178025 hm5C_site_31295 DeepMRMD:0.871850609779358;iRNA_m5C:0.999536712178025 31296 chr16 718508 718508 1 + G T PAAD 718514 + 718494 718534 41 CCCCGCGCGGAGGAGATCACCATCCCCGCGGACGTCACCCC CCCCGCGCGGAGGATATCACCATCCCCGCGGACGTCACCCC < 41bp 1 0.316811524730536 1 0.530578315258026 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:718514 chr16:718508 nonsynonymous SNV 0.847 2 15 hm5C_associated_SNPs_31178 0 0 1 0 2 Ribosome 1 0.500231643921098 0.938843369483948 0.999536712157805 hm5C_site_31296 DeepMRMD:0.938843369483948;iRNA_m5C:0.999536712157805 31297 chr5 177034312 177034312 1 + G A PAAD 177034319 + 177034299 177034339 41 ACAGGTTCAACCGGGCAGCGCTCATCAACGTGGGCTTCCTG ACAGGTTCAACCGAGCAGCGCTCATCAACGTGGGCTTCCTG < 41bp 1 0.162430679704933 1 0.0231880247592926 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177034319 chr5:177034312 nonsynonymous SNV . 0 14 hm5C_associated_SNPs_31179 0 0 1 0 1 Ribosome 1 0.500231641012424 1 0.999536717975152 hm5C_site_31297 DeepMRMD:1;iRNA_m5C:0.999536717975152 31298 chr3 183899752 183899752 1 + C T PAAD 183899733 + 183899713 183899753 41 AAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGTGCG AAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAGTGTG < 41bp 1 0.657918158014754 1 0.661724507808685 experiment 0.684163683970493 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899733 chr3:183899752 stopgain 0.996 1 40 hm5C_associated_SNPs_31180 0 0 1 0 2 Ribosome 1 0.500231581553707 0.67655098438263 0.999536836892586 hm5C_site_31298 DeepMRMD:0.67655098438263;iRNA_m5C:0.999536836892586 31299 chr5 154179551 154179551 1 + G A PAAD 154179534 + 154179514 154179554 41 AGGGCCTGTCTGCCAGCCTGCCTGACCTGGATTCTGAGAAC AGGGCCTGTCTGCCAGCCTGCCTGACCTGGATTCTGAAAAC < 41bp 1 0.248512141118947 1 0.0679100453853607 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154179534 chr5:154179551 synonymous SNV . 0 38 hm5C_associated_SNPs_31181 0 0 1 0 1 Cytosol 1 0.500231643910075 1 0.999536712179849 hm5C_site_31299 DeepMRMD:1;iRNA_m5C:0.999536712179849 31300 chr9 139563096 139563096 1 + C T PAAD 139563111 + 139563091 139563131 41 ACCTGCGACGGGCACCGGGCCTGCAGCACCTACCGGTGAGT ACCTGTGACGGGCACCGGGCCTGCAGCACCTACCGGTGAGT < 41bp 1 0.69673302067882 1 0.104153662919998 experiment 0.60653395864236 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139563111 chr9:139563096 synonymous SNV . 0 6 hm5C_associated_SNPs_31182 0 0 1 0 2 Ribosome 1 0.500231643920786 1 0.999536712158429 hm5C_site_31300 DeepMRMD:1;iRNA_m5C:0.999536712158429 31301 chr5 95091253 95091253 1 + A C PAAD 95091260 + 95091240 95091280 41 TGCGCTGTAAGCCATGTTTTCATGCTGCTTTTCAATGTGAA TGCGCTGTAAGCCCTGTTTTCATGCTGCTTTTCAATGTGAA < 41bp 1 0.221215479649063 1 0.105482548475266 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RHOBTB3 ENSG00000164292 CDS Human protein_coding chr5:95091260 chr5:95091253 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_31183 0 0 1 0 0 Cytosol 1 0.500231643914475 1 0.99953671217105 hm5C_site_31301 DeepMRMD:1;iRNA_m5C:0.99953671217105 31302 chr11 44129365 44129365 1 + C A PAAD 44129385 + 44129365 44129405 41 CTGGGCCTCATTGCCACTGGCATGTTTCAGTTTTGGCCCCA ATGGGCCTCATTGCCACTGGCATGTTTCAGTTTTGGCCCCA < 41bp 1 0.296983657654663 1 0.0792744159698486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129385 chr11:44129365 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_31184 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644918979 1 0.999536710162042 hm5C_site_31302 DeepMRMD:1;iRNA_m5C:0.999536710162042 31303 chr9 140167012 140167012 1 + G A PAAD 140167018 + 140166998 140167038 41 TCACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGT TCACCTGCACCCCAAGGTGGCCCCGTCTAAGCTGGAGGCGT < 41bp 1 0.283104321058134 1 0.0666371583938599 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167018 chr9:140167012 nonsynonymous SNV 0.676 1 15 hm5C_associated_SNPs_31185 0 0 1 0 2 Ribosome 1 0.50023164403676 1 0.99953671192648 hm5C_site_31303 DeepMRMD:1;iRNA_m5C:0.99953671192648 31304 chr9 140167012 140167012 1 + G A PAAD 140167019 + 140166999 140167039 41 CACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTT CACCTGCACCCCAAGGTGGCCCCGTCTAAGCTGGAGGCGTT < 41bp 1 0.251733060863961 1 0.128040313720703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167019 chr9:140167012 nonsynonymous SNV 0.676 1 14 hm5C_associated_SNPs_31186 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31304 DeepMRMD:1;iRNA_m5C:0.999536712157815 31305 chr9 140167012 140167012 1 + G A PAAD 140167020 + 140167000 140167040 41 ACCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTTG ACCTGCACCCCAAGGTGGCCCCGTCTAAGCTGGAGGCGTTG < 41bp 1 0.089696022048601 1 0.0895507633686066 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167020 chr9:140167012 nonsynonymous SNV 0.676 1 13 hm5C_associated_SNPs_31187 0 0 1 0 2 Ribosome 1 0.5002316438523 1 0.999536712295399 hm5C_site_31305 DeepMRMD:1;iRNA_m5C:0.999536712295399 31306 chr9 140167012 140167012 1 + G A PAAD 140167021 + 140167001 140167041 41 CCTGCACCCCAGGGTGGCCCCGTCTAAGCTGGAGGCGTTGC CCTGCACCCCAAGGTGGCCCCGTCTAAGCTGGAGGCGTTGC < 41bp 1 0.279340717710916 1 0.161710500717163 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NELFB ENSG00000188986 CDS Human protein_coding chr9:140167021 chr9:140167012 nonsynonymous SNV 0.676 1 12 hm5C_associated_SNPs_31188 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_31306 DeepMRMD:1;iRNA_m5C:0.999536712157815 31307 chr10 49639287 49639287 1 + T G PAAD 49639298 + 49639278 49639318 41 AGAATGGAGTTATACGGGGGCAGCCCTCTCCTTTAGGTTGG AGAATGGAGGTATACGGGGGCAGCCCTCTCCTTTAGGTTGG < 41bp 1 0.319962513639448 1 0.219493687152863 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8 ENSG00000107643 CDS Human protein_coding chr10:49639298 chr10:49639287 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_31189 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31307 DeepMRMD:1;iRNA_m5C:0.999536712157815 31308 chr19 45762366 45762366 1 + C T PAAD 45762352 + 45762332 45762372 41 TCGCCTCCTGTCCCGAGGAGCAGCCCCACGTGGGCAACTAC TCGCCTCCTGTCCCGAGGAGCAGCCCCACGTGGGTAACTAC < 41bp 1 0.193373711579269 1 0.672901034355164 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45762352 chr19:45762366 synonymous SNV . 0 35 hm5C_associated_SNPs_31192 0 0 1 0 1 Nucleus 1 0.500231643921092 0.654197931289672 0.999536712157815 hm5C_site_31308 DeepMRMD:0.654197931289672;iRNA_m5C:0.999536712157815 31309 chr7 75573203 75573203 1 + T C PAAD 75573189 + 75573169 75573209 41 TTGCAGGAAAGTCCAAAGGGCTGCGCGTCTCCTGTGGCTCA TTGCAGGAAAGTCCAAAGGGCTGCGCGTCTCCTGCGGCTCA < 41bp 1 0.385860877237409 1 0.101285248994827 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573189 chr7:75573203 . . 0 35 hm5C_associated_SNPs_31193 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31309 DeepMRMD:1;iRNA_m5C:0.999536712157815 31310 chr7 75573203 75573203 1 + T C PAAD 75573197 + 75573177 75573217 41 AAGTCCAAAGGGCTGCGCGTCTCCTGTGGCTCAGTCTTATT AAGTCCAAAGGGCTGCGCGTCTCCTGCGGCTCAGTCTTATT < 41bp 1 0.185628601392972 1 0.455709844827652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573197 chr7:75573203 . . 0 27 hm5C_associated_SNPs_31194 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31310 DeepMRMD:1;iRNA_m5C:0.999536712157815 31311 chr7 75573203 75573203 1 + T C PAAD 75573212 + 75573192 75573232 41 CGCGTCTCCTGTGGCTCAGTCTTATTTCATACCTGCAACAT CGCGTCTCCTGCGGCTCAGTCTTATTTCATACCTGCAACAT < 41bp 1 0.110410550912617 1 0.209189116954803 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA14A ENSG00000201643 ncRNA_exonic Human snoRNA chr7:75573212 chr7:75573203 . . 0 12 hm5C_associated_SNPs_31195 0 0 1 3 0 unknown 1 0.500231514457742 1 0.999536971084515 hm5C_site_31311 DeepMRMD:1;iRNA_m5C:0.999536971084515 31312 chr3 190347219 190347219 1 + G A PAAD 190347220 + 190347200 190347240 41 ACCTCTGAGGATCTCAAGCGCAGCTATGTCTGTCATGCTAG ACCTCTGAGGATCTCAAGCACAGCTATGTCTGTCATGCTAG < 41bp 1 0.449366307863526 1 0.149909615516663 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IL1RAP ENSG00000196083 CDS Human protein_coding chr3:190347220 chr3:190347219 nonsynonymous SNV 0.987 3 20 hm5C_associated_SNPs_31196 0 0 1 0 2 Endoplasmic reticulum 1 0.500232592621091 1 0.999534814757819 hm5C_site_31312 DeepMRMD:1;iRNA_m5C:0.999534814757819 31313 chr1 11718605 11718605 1 + C A PAAD 11718593 + 11718573 11718613 41 CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCCCAGGTGGT CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCACAGGTGGT < 41bp 1 0.214368863977974 1 0.0770134627819061 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718593 chr1:11718605 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_31197 0 0 1 2 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_31313 DeepMRMD:1;iRNA_m5C:0.999536712157815 31314 chr9 123898163 123898163 1 + G T PAAD 123898159 + 123898139 123898179 41 TGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAAGCTGAG TGCAGCAGACCCAGGGAGATCTCATTGCCTATGAAGCTGAG < 41bp 1 0.451911048689186 1 0.411755383014679 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898159 chr9:123898163 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_31198 0 0 1 0 2 chromatin 1 0.500231643986774 1 0.999536712026451 hm5C_site_31314 DeepMRMD:1;iRNA_m5C:0.999536712026451 31315 chr11 64022436 64022436 1 + A G PAAD 64022456 + 64022436 64022476 41 ACGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT GCGGTGGTGTCTGGGCCAGACCCAGTGAACACAGTGTTCTT < 41bp 1 0.375638058008729 1 0.108093112707138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64022456 chr11:64022436 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_31199 0 0 1 0 3 Ribosome 1 0.500231707929219 1 0.999536584141563 hm5C_site_31315 DeepMRMD:1;iRNA_m5C:0.999536584141563 31316 chr8 17055101 17055101 1 + C A PAAD 17055095 + 17055075 17055115 41 AGCTTTTTGTCCCTAGCCATCCGATACTGTGACAGATGCCA AGCTTTTTGTCCCTAGCCATCCGATAATGTGACAGATGCCA < 41bp 1 0.172175989217895 1 0.154590457677841 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZDHHC2 ENSG00000104219 CDS Human protein_coding chr8:17055095 chr8:17055101 stopgain 0.997 0 27 hm5C_associated_SNPs_31201 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643931316 1 0.999536712137368 hm5C_site_31316 DeepMRMD:1;iRNA_m5C:0.999536712137368 31317 chr12 122620057 122620057 1 + C A PAAD 122620047 + 122620027 122620067 41 TCACTGCAGGCTCCTGGGGTCCCGGAGTTCCACAGCAGCAT TCACTGCAGGCTCCTGGGGTCCCGGAGTTCAACAGCAGCAT < 41bp 1 0.359711644044456 1 0.194821268320084 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MLXIP ENSG00000175727 CDS Human protein_coding chr12:122620047 chr12:122620057 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_31202 0 0 1 0 1 chromatin 1 0.500231643831989 1 0.999536712336022 hm5C_site_31317 DeepMRMD:1;iRNA_m5C:0.999536712336022 31318 chr6 133844298 133844298 1 + A G PAAD 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTGCAGTG < 41bp 1 0.0987535336932701 1 0.54431563615799 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844298 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_31203 0 0 0 0 1 Cytosol 1 0.500231643922898 0.91136872768402 0.999536712154205 hm5C_site_31318 DeepMRMD:0.91136872768402;iRNA_m5C:0.999536712154205 31319 chr6 133844298 133844298 1 + A G PAAD 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTGCAGTGC < 41bp 1 0.105979290928745 1 0.172400593757629 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844298 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_31204 0 0 0 0 1 Cytosol 1 0.500231643909032 1 0.999536712181936 hm5C_site_31319 DeepMRMD:1;iRNA_m5C:0.999536712181936 31320 chr4 8229864 8229864 1 + G T PAAD 8229856 + 8229836 8229876 41 CATCACCTTCATGACGCAGGCAGTGGAAGCCAGTGCTATTG CATCACCTTCATGACGCAGGCAGTGGAATCCAGTGCTATTG < 41bp 1 0.370605526061021 1 0.507364630699158 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8229856 chr4:8229864 nonsynonymous SNV 0.011 0 29 hm5C_associated_SNPs_31205 0 0 0 0 0 cytosol 1 0.500231643858295 0.985270738601684 0.99953671228341 hm5C_site_31320 DeepMRMD:0.985270738601684;iRNA_m5C:0.99953671228341 31321 chr16 85691142 85691142 1 + G A PAAD 85691160 + 85691140 85691180 41 GAGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGA GAACAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGA < 41bp 1 0.360861439006254 1 0.631797909736633 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691160 chr16:85691142 synonymous SNV . 0 3 hm5C_associated_SNPs_31206 0 0 1 0 1 Cytosol 1 0.500231643921093 0.736404180526734 0.999536712157814 hm5C_site_31321 DeepMRMD:0.736404180526734;iRNA_m5C:0.999536712157814 31322 chr16 85691142 85691142 1 + G A PAAD 85691161 + 85691141 85691181 41 AGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGAG AACAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGAG < 41bp 1 0.320902038963429 1 0.572735965251923 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691161 chr16:85691142 synonymous SNV . 0 2 hm5C_associated_SNPs_31207 0 0 1 0 1 Cytosol 1 0.500231644090487 0.854528069496154 0.999536711819026 hm5C_site_31322 DeepMRMD:0.854528069496154;iRNA_m5C:0.999536711819026 31323 chr1 107599623 107599623 1 + C A PAAD 107599619 + 107599599 107599639 41 GACGTGGGCGCGGGCACCGGCATTCTGAGCATCTTCTGTGC GACGTGGGCGCGGGCACCGGCATTATGAGCATCTTCTGTGC < 41bp 1 0.656465891487536 1 0.273914098739624 experiment 0.687068217024928 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRMT6 ENSG00000198890 CDS Human protein_coding chr1:107599619 chr1:107599623 nonsynonymous SNV 0.980 4 25 hm5C_associated_SNPs_31208 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31323 DeepMRMD:1;iRNA_m5C:0.999536712157815 31324 chr1 114215988 114215988 1 + C T PAAD 114215980 + 114215960 114216000 41 CAGTAGAGCTGGAGAGAGGCCCCCGGGGCTTTGGATTCAGC CAGTAGAGCTGGAGAGAGGCCCCCGGGGTTTTGGATTCAGC < 41bp 1 0.232614018699562 1 0.280666053295135 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114215980 chr1:114215988 synonymous SNV . 0 29 hm5C_associated_SNPs_31210 0 0 0 0 2 Cytosol 1 0.500231648819423 1 0.999536702361153 hm5C_site_31324 DeepMRMD:1;iRNA_m5C:0.999536702361153 31325 chr5 85915251 85915251 1 + T G PAAD 85915269 + 85915249 85915289 41 CCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGA CCGTCCTTGTAGTAAGACACCAACTGCTTAAAACATAAGGA < 41bp 1 0.334243020882418 1 0.402180016040802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COX7C ENSG00000127184 CDS Human protein_coding chr5:85915269 chr5:85915251 nonsynonymous SNV 0.495 4 3 hm5C_associated_SNPs_31211 0 0 1 0 2 Ribosome 1 0.500231643922821 1 0.999536712154358 hm5C_site_31325 DeepMRMD:1;iRNA_m5C:0.999536712154358 31326 chr14 103804290 103804290 1 + C T PAAD 103804271 + 103804251 103804291 41 GTCTAACCTATTCCGGTGTTCTCTCTCCCATGAGACAAGCC GTCTAACCTATTCCGGTGTTCTCTCTCCCATGAGACAAGTC < 41bp 1 0.0811159278377949 1 0.0654754340648651 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804271 chr14:103804290 . . 0 40 hm5C_associated_SNPs_31212 0 0 1 1 0 unknown 1 0.500231643909584 1 0.999536712180832 hm5C_site_31326 DeepMRMD:1;iRNA_m5C:0.999536712180832 31327 chr14 103804290 103804290 1 + C T PAAD 103804277 + 103804257 103804297 41 CCTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATA CCTATTCCGGTGTTCTCTCTCCCATGAGACAAGTCGTTATA < 41bp 1 0.204131829690074 1 0.274011045694351 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804277 chr14:103804290 . . 0 34 hm5C_associated_SNPs_31213 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31327 DeepMRMD:1;iRNA_m5C:0.999536712157815 31328 chr14 103804290 103804290 1 + C T PAAD 103804278 + 103804258 103804298 41 CTATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATAT CTATTCCGGTGTTCTCTCTCCCATGAGACAAGTCGTTATAT < 41bp 1 0.090082416108346 1 0.156279802322388 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804278 chr14:103804290 . . 0 33 hm5C_associated_SNPs_31214 0 0 1 1 0 unknown 1 0.500311014418765 1 0.99937797116247 hm5C_site_31328 DeepMRMD:1;iRNA_m5C:0.99937797116247 31329 chr14 103804290 103804290 1 + C T PAAD 103804279 + 103804259 103804299 41 TATTCCGGTGTTCTCTCTCCCATGAGACAAGCCGTTATATA TATTCCGGTGTTCTCTCTCCCATGAGACAAGTCGTTATATA < 41bp 1 0.490013368855711 1 0.36325204372406 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA28 ENSG00000272533 ncRNA_exonic Human snoRNA chr14:103804279 chr14:103804290 . . 0 32 hm5C_associated_SNPs_31215 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31329 DeepMRMD:1;iRNA_m5C:0.999536712157815 31330 chr8 22037910 22037910 1 + G A PAAD 22037894 + 22037874 22037914 41 CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCACAGGCAA CTCACAGCCTGTGGAGAGACCCTGCAAGACAGCACAAGCAA < 41bp 1 0.0957397087101628 1 0.318967431783676 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037894 chr8:22037910 nonsynonymous SNV 0.985 3 37 hm5C_associated_SNPs_31216 0 0 0 0 2 Endoplasmic reticulum 1 0.500231807526892 1 0.999536384946215 hm5C_site_31330 DeepMRMD:1;iRNA_m5C:0.999536384946215 31331 chr16 3076719 3076719 1 + G A PAAD 3076699 + 3076679 3076719 41 GAGGGTCCTCCGGGGCCACACAGACTACATCCACTGCCTGG GAGGGTCCTCCGGGGCCACACAGACTACATCCACTGCCTGA < 41bp 1 0.568430034392289 1 0.456067770719528 experiment 0.863139931215422 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control THOC6 ENSG00000131652 CDS Human protein_coding chr16:3076699 chr16:3076719 nonsynonymous SNV 0.989 1 41 hm5C_associated_SNPs_31217 0 0 1 0 2 Ribosome 1 0.500231643929058 1 0.999536712141884 hm5C_site_31331 DeepMRMD:1;iRNA_m5C:0.999536712141884 31332 chr11 64137787 64137787 1 + G A PAAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCCGCAAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG < 41bp 1 0.427217041273108 1 0.356209129095078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137787 nonsynonymous SNV 0.991 1 10 hm5C_associated_SNPs_31218 0 0 0 0 3 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31332 DeepMRMD:1;iRNA_m5C:0.999536712157815 31333 chr12 112579955 112579955 1 + G T PAAD 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAATAGA < 41bp 1 0.270896563673576 1 0.307587116956711 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579955 stopgain 0.708 0 38 hm5C_associated_SNPs_31220 0 0 0 0 1 Cytosol 1 0.500231643783117 1 0.999536712433766 hm5C_site_31333 DeepMRMD:1;iRNA_m5C:0.999536712433766 31334 chr3 42685488 42685488 1 + C T PAAD 42685493 + 42685473 42685513 41 AGAAGTTATAATCGGCGGTCCAGGTGGGTCTCTCTCCTTTA AGAAGTTATAATCGGTGGTCCAGGTGGGTCTCTCTCCTTTA < 41bp 1 0.546683847061769 1 0.6304070353508 experiment 0.906632305876461 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NKTR ENSG00000114857 CDS Human protein_coding chr3:42685493 chr3:42685488 nonsynonymous SNV 0.994 0 16 hm5C_associated_SNPs_31221 0 0 1 0 3 Nucleus 1 0.500231643921092 0.7391859292984 0.999536712157815 hm5C_site_31334 DeepMRMD:0.7391859292984;iRNA_m5C:0.999536712157815 31335 chr15 43816613 43816613 1 + A G PAAD 43816600 + 43816580 43816620 41 TACATCCAGGAGAACCAGCCCTTGGAGAAGCAGAGGAGCGG TACATCCAGGAGAACCAGCCCTTGGAGAAGCAGGGGAGCGG < 41bp 1 0.198487556428043 1 0.651990830898285 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP1A ENSG00000166963 CDS Human protein_coding chr15:43816600 chr15:43816613 nonsynonymous SNV 0.738 3 34 hm5C_associated_SNPs_31222 0 0 0 0 0 nucleolus 1 0.500231643921092 0.69601833820343 0.999536712157815 hm5C_site_31335 DeepMRMD:0.69601833820343;iRNA_m5C:0.999536712157815 31336 chr8 22475262 22475262 1 + G T PAAD 22475273 + 22475253 22475293 41 AACCAGTCAGAGATGGAGTTCTCTTCACTTCAGGACATGGT AACCAGTCATAGATGGAGTTCTCTTCACTTCAGGACATGGT < 41bp 1 0.0554938447406278 1 0.0877296924591064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475273 chr8:22475262 stopgain 0.999 1 10 hm5C_associated_SNPs_31224 0 0 1 0 2 Nucleus 1 0.500231637874961 1 0.999536724250078 hm5C_site_31336 DeepMRMD:1;iRNA_m5C:0.999536724250078 31337 chrX 14929376 14929376 1 + C A PAAD 14929381 + 14929361 14929401 41 TCCTTTCAAGTATAGCTATCCACCACTAGTAGATGATGACT TCCTTTCAAGTATAGATATCCACCACTAGTAGATGATGACT < 41bp 1 0.667481279530906 1 0.265115737915039 experiment 0.665037440938187 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14929381 chrX:14929376 nonsynonymous SNV 0.999 3 16 hm5C_associated_SNPs_31225 0 0 0 0 1 Cytosol 1 0.500231643919821 1 0.999536712160357 hm5C_site_31337 DeepMRMD:1;iRNA_m5C:0.999536712160357 31338 chr14 38679130 38679130 1 + T C PAAD 38679144 + 38679124 38679164 41 TAAACCTGGGCGTGTGGGTGCTATCGCTGCTCGTCATCCTG TAAACCCGGGCGTGTGGGTGCTATCGCTGCTCGTCATCCTG < 41bp 1 0.178039597327961 1 0.054966002702713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSTR1 ENSG00000139874 CDS Human protein_coding chr14:38679144 chr14:38679130 nonsynonymous SNV 0.999 2 7 hm5C_associated_SNPs_31226 0 0 0 0 0 nucleus 1 0.500231643921087 1 0.999536712157827 hm5C_site_31338 DeepMRMD:1;iRNA_m5C:0.999536712157827 31339 chr2 26999265 26999265 1 + G T PAAD 26999245 + 26999225 26999265 41 CCTCCTTCCCCACAGGGGACCTGTTGATCATCATGGCCCAG CCTCCTTCCCCACAGGGGACCTGTTGATCATCATGGCCCAT < 41bp 1 0.0921615104979723 1 0.218355566263199 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC35F6 ENSG00000213699 CDS Human protein_coding chr2:26999245 chr2:26999265 nonsynonymous SNV 0.996 4 41 hm5C_associated_SNPs_31227 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_31339 DeepMRMD:1;iRNA_m5C:0.999536712157816 31340 chrX 110954908 110954908 1 + G A PAAD 110954916 + 110954896 110954936 41 TTTGAAGTATGTGGAGGGATCTTTTGAGAAATACCTGGAAC TTTGAAGTATGTAGAGGGATCTTTTGAGAAATACCTGGAAC < 41bp 1 0.124910982147797 1 0.0593499541282654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110954916 chrX:110954908 synonymous SNV . 0 13 hm5C_associated_SNPs_31228 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31340 DeepMRMD:1;iRNA_m5C:0.999536712157815 31341 chr17 49239138 49239138 1 + G A PAAD 49239124 + 49239104 49239144 41 CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGCTTGT CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCAGCTTGT < 41bp 1 0.418503188679261 1 0.454023748636246 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239124 chr17:49239138 nonsynonymous SNV 0.837 0 35 hm5C_associated_SNPs_31230 0 0 1 0 1 Ribosome 1 0.500231643908023 1 0.999536712183953 hm5C_site_31341 DeepMRMD:1;iRNA_m5C:0.999536712183953 31342 chr5 173378900 173378900 1 + A C PAAD 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCACGAACAACTATATTTGTT < 41bp 1 0.16879160262073 1 0.18086189031601 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378900 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_31231 0 0 1 0 2 Ribosome 1 0.500261301691363 1 0.999477396617274 hm5C_site_31342 DeepMRMD:1;iRNA_m5C:0.999477396617274 31343 chr19 10200693 10200693 1 + C A PAAD 10200684 + 10200664 10200704 41 CAGTTTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCG CAGTTTGCCTGCTCCTCCTGCGACCACGTATGGTGGCGCCG < 41bp 1 0.222878614764982 1 0.440305888652802 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200684 chr19:10200693 nonsynonymous SNV 0.998 0 30 hm5C_associated_SNPs_31232 0 0 1 0 1 Ribosome 1 0.500231643919511 1 0.999536712160978 hm5C_site_31343 DeepMRMD:1;iRNA_m5C:0.999536712160978 31344 chr19 10200693 10200693 1 + C A PAAD 10200688 + 10200668 10200708 41 TTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCGCGTG TTGCCTGCTCCTCCTGCGACCACGTATGGTGGCGCCGCGTG < 41bp 1 0.645102427882534 1 0.536223948001862 experiment 0.709795144234933 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200688 chr19:10200693 nonsynonymous SNV 0.998 0 26 hm5C_associated_SNPs_31233 0 0 1 0 1 Ribosome 1 0.500231633341507 0.927552103996276 0.999536733316985 hm5C_site_31344 DeepMRMD:0.927552103996276;iRNA_m5C:0.999536733316985 31345 chr14 97018865 97018865 1 + G A PAAD 97018858 + 97018838 97018878 41 TTGACAGCTCTCAATGACAGCAGCCTCGACTTGTCTATGGA TTGACAGCTCTCAATGACAGCAGCCTCAACTTGTCTATGGA < 41bp 1 0.23683933200501 1 0.245135724544525 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97018858 chr14:97018865 nonsynonymous SNV 0.995 1 28 hm5C_associated_SNPs_31234 0 0 1 0 2 Ribosome 1 0.500231642055944 1 0.999536715888112 hm5C_site_31345 DeepMRMD:1;iRNA_m5C:0.999536715888112 31346 chr18 13059253 13059253 1 + C T PAAD 13059272 + 13059252 13059292 41 GCAGAAGCTTTGGCCAGCACCGTCACTCTCACTGCCATTGC GTAGAAGCTTTGGCCAGCACCGTCACTCTCACTGCCATTGC < 41bp 1 0.516166994880811 1 0.266122072935104 experiment 0.967666010238378 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13059272 chr18:13059253 nonsynonymous SNV 0.005 3 2 hm5C_associated_SNPs_31235 0 0 1 0 0 Nucleus 1 0.500253451600445 1 0.999493096799109 hm5C_site_31346 DeepMRMD:1;iRNA_m5C:0.999493096799109 31347 chr14 105179914 105179914 1 + C T PAAD 105179915 + 105179895 105179935 41 GGGGGCAGCAAGGCAGCCTCCATGGATCCCCCAAGAGCCAC GGGGGCAGCAAGGCAGCCTTCATGGATCCCCCAAGAGCCAC < 41bp 1 0.672498801834939 1 0.417495906352997 experiment 0.655002396330121 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105179915 chr14:105179914 nonsynonymous SNV 0.000 1 20 hm5C_associated_SNPs_31236 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31347 DeepMRMD:1;iRNA_m5C:0.999536712157815 31348 chr5 131667484 131667484 1 + T G PAAD 131667467 + 131667447 131667487 41 AGGAGCTAAATCCCCTGAAGCAGCAGAAAGCTTTCATTCTG AGGAGCTAAATCCCCTGAAGCAGCAGAAAGCTTTCATGCTG < 41bp 1 0.685466636184649 1 0.82073712348938 experiment 0.629066727630703 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131667467 chr5:131667484 nonsynonymous SNV 0.986 0 38 hm5C_associated_SNPs_31237 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643853026 0.35852575302124 0.999536712293949 hm5C_site_31348 DeepMRMD:0.35852575302124;iRNA_m5C:0.999536712293949 31349 chr11 64138899 64138899 1 + G A PAAD 64138919 + 64138899 64138939 41 GTCGCCTCCAAAGGGGCCCCCCGCCGAGCCAACGGCCCCCT ATCGCCTCCAAAGGGGCCCCCCGCCGAGCCAACGGCCCCCT < 41bp 1 0.309408682552975 1 0.22417339682579 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64138919 chr11:64138899 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_31238 0 0 0 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_31349 DeepMRMD:1;iRNA_m5C:0.999536712157814 31350 chr17 62223484 62223484 1 + A G PAAD 62223469 + 62223449 62223489 41 ATGACATTCCAATTAAAGCACGTGTTAGACTGCTGACGCGG ATGACATTCCAATTAAAGCACGTGTTAGACTGCTGGCGCGG < 41bp 1 0.418640942218526 1 0.301680535078049 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223469 chr17:62223484 . . 0 36 hm5C_associated_SNPs_31239 0 0 1 1 0 unknown 1 0.500231634748614 1 0.999536730502772 hm5C_site_31350 DeepMRMD:1;iRNA_m5C:0.999536730502772 31351 chr17 62223484 62223484 1 + A G PAAD 62223481 + 62223461 62223501 41 TTAAAGCACGTGTTAGACTGCTGACGCGGGTGATGCGAACT TTAAAGCACGTGTTAGACTGCTGGCGCGGGTGATGCGAACT < 41bp 1 0.605489427645481 1 0.252405226230621 experiment 0.789021144709039 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223481 chr17:62223484 . . 0 24 hm5C_associated_SNPs_31240 0 0 1 1 0 unknown 1 0.500231637870028 1 0.999536724259943 hm5C_site_31351 DeepMRMD:1;iRNA_m5C:0.999536724259943 31352 chr17 62223484 62223484 1 + A G PAAD 62223496 + 62223476 62223516 41 GACTGCTGACGCGGGTGATGCGAACTGGAGTCTGAGCCTGC GACTGCTGGCGCGGGTGATGCGAACTGGAGTCTGAGCCTGC < 41bp 1 0.49980666104801 1 0.453072398900986 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD104 ENSG00000199753 ncRNA_exonic Human snoRNA chr17:62223496 chr17:62223484 . . 0 9 hm5C_associated_SNPs_31241 0 0 1 1 0 unknown 1 0.500231644569227 1 0.999536710861546 hm5C_site_31352 DeepMRMD:1;iRNA_m5C:0.999536710861546 31353 chr1 24996768 24996768 1 + A C PAAD 24996751 + 24996731 24996771 41 ACCGTCTACAAACTGGTCACCAGCTGTACCGGTCAAAAAGG ACCGTCTACAAACTGGTCACCAGCTGTACCGGTCAAACAGG < 41bp 1 0.547503279461328 1 0.641106128692627 experiment 0.904993441077344 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996751 chr1:24996768 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_31242 0 0 1 0 0 Cytosol 1 0.500231643921092 0.717787742614746 0.999536712157815 hm5C_site_31353 DeepMRMD:0.717787742614746;iRNA_m5C:0.999536712157815 31354 chr19 10794144 10794144 1 + C T PAAD 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCCCTGACACCTCTCTCGCCCTTG < 41bp 1 0.410097770626765 1 0.0616968274116516 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794144 nonsynonymous SNV 0.249 0 29 hm5C_associated_SNPs_31243 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_31354 DeepMRMD:1;iRNA_m5C:0.999536712157815 31355 chr19 10794144 10794144 1 + C T PAAD 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCCCTGACACCTCTCTCGCCCTTGATGCCA < 41bp 1 0.0722896524807815 1 0.0413323938846588 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794144 nonsynonymous SNV 0.249 0 23 hm5C_associated_SNPs_31244 0 0 1 0 1 Cytosol 1 0.500231643989287 1 0.999536712021426 hm5C_site_31355 DeepMRMD:1;iRNA_m5C:0.999536712021426 31356 chr3 38524754 38524754 1 + G A PAAD 38524735 + 38524715 38524755 41 GGTGTCCCTGATTCGGAGGTCGGTCAACGGCACTACCTCGG GGTGTCCCTGATTCGGAGGTCGGTCAACGGCACTACCTCAG < 41bp 1 0.25230564930773 1 0.384191632270813 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38524735 chr3:38524754 synonymous SNV . 0 40 hm5C_associated_SNPs_31245 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31356 DeepMRMD:1;iRNA_m5C:0.999536712157815 31357 chr3 41275096 41275096 1 + C T PAAD 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACCTGTGCAGTTGGAATTCTTTCTAACCTCACTTGCAAT < 41bp 1 0.100005987704676 1 0.135598421096802 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275096 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_31247 0 0 1 0 1 Nucleus 1 0.500231643920198 1 0.999536712159603 hm5C_site_31357 DeepMRMD:1;iRNA_m5C:0.999536712159603 31358 chr17 33900720 33900720 1 + C A PAAD 33900704 + 33900684 33900724 41 ATGAGTGAAGTAGAGCCTGACCTGGTATTGCCATTGCTTCA ATGAGTGAAGTAGAGCCTGACCTGGTATTGCCATTGATTCA < 41bp 1 0.249887197879399 1 0.0419555902481079 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD7 ENSG00000207297 ncRNA_exonic Human snoRNA chr17:33900704 chr17:33900720 . . 0 37 hm5C_associated_SNPs_31248 0 0 1 0 0 unknown 1 0.500231643924582 1 0.999536712150836 hm5C_site_31358 DeepMRMD:1;iRNA_m5C:0.999536712150836 31359 chr17 33900720 33900720 1 + C A PAAD 33900715 + 33900695 33900735 41 AGAGCCTGACCTGGTATTGCCATTGCTTCACTGTTGGCTTT AGAGCCTGACCTGGTATTGCCATTGATTCACTGTTGGCTTT < 41bp 1 0.261323624284575 1 0.0858983397483826 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD7 ENSG00000207297 ncRNA_exonic Human snoRNA chr17:33900715 chr17:33900720 . . 0 26 hm5C_associated_SNPs_31250 0 0 1 0 0 unknown 1 0.500231643365842 1 0.999536713268315 hm5C_site_31359 DeepMRMD:1;iRNA_m5C:0.999536713268315 31360 chr17 33900720 33900720 1 + C A PAAD 33900725 + 33900705 33900745 41 CTGGTATTGCCATTGCTTCACTGTTGGCTTTGACCAGGGTA CTGGTATTGCCATTGATTCACTGTTGGCTTTGACCAGGGTA < 41bp 1 0.380836663198606 1 0.147619843482971 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD7 ENSG00000207297 ncRNA_exonic Human snoRNA chr17:33900725 chr17:33900720 . . 0 16 hm5C_associated_SNPs_31251 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31360 DeepMRMD:1;iRNA_m5C:0.999536712157815 31361 chr11 10772966 10772966 1 + C T PAAD 10772973 + 10772953 10772993 41 CCCCATCATGTCGCGGGGCTCCATCGAGATTCCCCTCCGGG CCCCATCATGTCGTGGGGCTCCATCGAGATTCCCCTCCGGG < 41bp 1 0.125441360874845 1 0.090250700712204 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10772973 chr11:10772966 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_31252 0 0 1 0 1 Cytosol 1 0.500231643790426 1 0.999536712419148 hm5C_site_31361 DeepMRMD:1;iRNA_m5C:0.999536712419148 31362 chr1 28607282 28607282 1 + C T PAAD 28607298 + 28607278 28607318 41 TACGCCCTCCGTGCCATCACCCGCTACATGACCTGACTCCT TACGTCCTCCGTGCCATCACCCGCTACATGACCTGACTCCT < 41bp 1 0.127353303394792 1 0.638968110084534 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28607298 chr1:28607282 nonsynonymous SNV 0.944 1 5 hm5C_associated_SNPs_31253 0 0 1 0 1 Ribosome 1 0.500231660134582 0.722063779830932 0.999536679730835 hm5C_site_31362 DeepMRMD:0.722063779830932;iRNA_m5C:0.999536679730835 31363 chr3 170009678 170009678 1 + T C PAAD 170009695 + 170009675 170009715 41 TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG TTCCGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG < 41bp 1 0.100718146957955 1 0.0428065657615662 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:170009695 chr3:170009678 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_31254 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31363 DeepMRMD:1;iRNA_m5C:0.999536712157815 31364 chr4 3495172 3495172 1 + G T PAAD 3495163 + 3495143 3495183 41 CAGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCG CAGGCGGCCCCCACGCGGGGCCACCCCCGTCTTTCTTTTCG < 41bp 1 0.0211213429191297 1 0.0295979678630829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495163 chr4:3495172 nonsynonymous SNV 0.569 4 30 hm5C_associated_SNPs_31255 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31364 DeepMRMD:1;iRNA_m5C:0.999536712157815 31365 chr4 3495172 3495172 1 + G T PAAD 3495164 + 3495144 3495184 41 AGGCGGCCCCCACGCGGGGCCACCCCCGGCTTTCTTTTCGG AGGCGGCCCCCACGCGGGGCCACCCCCGTCTTTCTTTTCGG < 41bp 1 0.145153708525917 1 0.0945664048194885 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495164 chr4:3495172 nonsynonymous SNV 0.569 4 29 hm5C_associated_SNPs_31256 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31365 DeepMRMD:1;iRNA_m5C:0.999536712157815 31366 chr22 25043008 25043008 1 + G A PAAD 25042991 + 25042971 25043011 41 AGAGAGAGGTCCAAGGTGCCCTACATCATGCGCCAGTGCGT AGAGAGAGGTCCAAGGTGCCCTACATCATGCGCCAGTACGT < 41bp 1 0.672717593112148 1 0.390063941478729 experiment 0.654564813775704 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCRP3;POM121L10P ENSG00000215481;ENSG00000224124 ncRNA_exonic Human other chr22:25042991 chr22:25043008 . . 0 38 hm5C_associated_SNPs_31257 0 0 0 0 2 unknown 1 0.500231643914753 1 0.999536712170493 hm5C_site_31366 DeepMRMD:1;iRNA_m5C:0.999536712170493 31367 chr9 133760702 133760702 1 + C T PAAD 133760722 + 133760702 133760742 41 CGAGTGTCTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGAT TGAGTGTCTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGAT < 41bp 1 0.0650209926062457 1 0.143247932195663 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760722 chr9:133760702 stopgain 0.996 1 1 hm5C_associated_SNPs_31258 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643476567 1 0.999536713046866 hm5C_site_31367 DeepMRMD:1;iRNA_m5C:0.999536713046866 31368 chr2 32696171 32696171 1 + G A PAAD 32696172 + 32696152 32696192 41 TGTTGAAGATGAAGCAGCAGCTGCAAAGAAACCTTTGAATG TGTTGAAGATGAAGCAGCAACTGCAAAGAAACCTTTGAATG < 41bp 1 0.473687611670819 1 0.357061147689819 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32696172 chr2:32696171 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_31260 0 0 0 0 2 Nucleus 1 0.500231634015683 1 0.999536731968635 hm5C_site_31368 DeepMRMD:1;iRNA_m5C:0.999536731968635 31369 chr2 32696171 32696171 1 + G A PAAD 32696175 + 32696155 32696195 41 TGAAGATGAAGCAGCAGCTGCAAAGAAACCTTTGAATGGTA TGAAGATGAAGCAGCAACTGCAAAGAAACCTTTGAATGGTA < 41bp 1 0.0962663294491573 1 0.449520617723465 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32696175 chr2:32696171 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_31261 0 0 0 0 2 Nucleus 1 0.500220352927213 1 0.999559294145575 hm5C_site_31369 DeepMRMD:1;iRNA_m5C:0.999559294145575 31370 chr17 20135100 20135100 1 + T C PAAD 20135081 + 20135061 20135101 41 TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGAAGTC TTATTTCTAGGTAGTGTGATCAAGCTGGAGGAACAGAAGCC < 41bp 1 0.258701185443368 1 0.516099870204926 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135081 chr17:20135100 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_31262 0 0 1 0 2 Cytosol 1 0.500231643911635 0.967800259590148 0.999536712176731 hm5C_site_31370 DeepMRMD:0.967800259590148;iRNA_m5C:0.999536712176731 31371 chr17 20135100 20135100 1 + T C PAAD 20135094 + 20135074 20135114 41 GTGTGATCAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGG GTGTGATCAAGCTGGAGGAACAGAAGCCAGACCTGGAGAGG < 41bp 1 0.564418972326958 1 0.428783506155014 experiment 0.871162055346084 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135094 chr17:20135100 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_31263 0 0 1 0 2 Cytosol 1 0.500231643921596 1 0.999536712156808 hm5C_site_31371 DeepMRMD:1;iRNA_m5C:0.999536712156808 31372 chr17 20135100 20135100 1 + T C PAAD 20135101 + 20135081 20135121 41 CAAGCTGGAGGAACAGAAGTCAGACCTGGAGAGGCAGCTGA CAAGCTGGAGGAACAGAAGCCAGACCTGGAGAGGCAGCTGA < 41bp 1 0.17559457160901 1 0.350308954715729 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20135101 chr17:20135100 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_31264 0 0 1 0 2 Cytosol 1 0.500231643923905 1 0.999536712152191 hm5C_site_31372 DeepMRMD:1;iRNA_m5C:0.999536712152191 31373 chr7 129394908 129394908 1 + G A PAAD 129394901 + 129394881 129394921 41 ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACGG ATGTACCAGACTGTGGTGACCAGCCTCACCCAGGGCAACGG < 41bp 1 0.583863391957741 1 0.192728310823441 experiment 0.832273216084517 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394901 chr7:129394908 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_31265 0 0 1 0 1 chromatin 1 0.500231671402897 1 0.999536657194206 hm5C_site_31373 DeepMRMD:1;iRNA_m5C:0.999536657194206 31374 chr3 142739482 142739482 1 + G A PAAD 142739480 + 142739460 142739500 41 GAGAGACATAAAACAAAAGGCAGATTAAGTCGATTTGAACC GAGAGACATAAAACAAAAGGCAAATTAAGTCGATTTGAACC < 41bp 1 0.181319360650217 1 0.394461810588837 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142739480 chr3:142739482 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_31266 0 0 1 0 2 Cytosol 1 0.500231643953104 1 0.999536712093792 hm5C_site_31374 DeepMRMD:1;iRNA_m5C:0.999536712093792 31375 chr17 72239558 72239558 1 + C T PAAD 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGCTCTTTATCCTGGACCTGGTCATCTGTCTCATTGC < 41bp 1 0.141740689004926 1 0.051023006439209 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239558 synonymous SNV . 0 33 hm5C_associated_SNPs_31267 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31375 DeepMRMD:1;iRNA_m5C:0.999536712157815 31376 chr17 72435964 72435964 1 + C A PAAD 72435978 + 72435958 72435998 41 CTCTTCCTGTTCCCAGGGGCCTGGGCCCAGGGCCATGTCCC CTCTTCATGTTCCCAGGGGCCTGGGCCCAGGGCCATGTCCC < 41bp 1 0.667264202173871 1 0.545791923999786 experiment 0.665471595652257 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPRC5C ENSG00000170412 CDS Human protein_coding chr17:72435978 chr17:72435964 nonsynonymous SNV 0.984 2 7 hm5C_associated_SNPs_31268 0 0 1 0 0 nucleus 1 0.500231613160233 0.908416152000428 0.999536773679534 hm5C_site_31376 DeepMRMD:0.908416152000428;iRNA_m5C:0.999536773679534 31377 chr10 17276772 17276772 1 + A G PAAD 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGGCAGGT < 41bp 1 0.300754738748721 1 0.161451011896133 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276772 synonymous SNV . 0 36 hm5C_associated_SNPs_31269 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_31377 DeepMRMD:1;iRNA_m5C:0.999536712157815 31378 chr3 32483422 32483422 1 + G A PAAD 32483437 + 32483417 32483457 41 TTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCAC TTTGCAACTTGATAATGATCCTCGCCTTTTACCTGGTCCAC < 41bp 1 0.498880766394587 1 0.079690009355545 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32483437 chr3:32483422 nonsynonymous SNV 0.994 0 6 hm5C_associated_SNPs_31270 0 0 1 0 2 Ribosome 1 0.500231667736276 1 0.999536664527448 hm5C_site_31378 DeepMRMD:1;iRNA_m5C:0.999536664527448 31379 chr16 599309 599309 1 + G A PAAD 599322 + 599302 599342 41 TGGCGGTGCTGGCGGAGCGGCCGGACCTGGTGGAGCGGGTG TGGCGGTACTGGCGGAGCGGCCGGACCTGGTGGAGCGGGTG < 41bp 1 0.30934889286102 1 0.696242928504944 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:599322 chr16:599309 synonymous SNV . 0 8 hm5C_associated_SNPs_31271 0 0 1 0 1 chromatin 1 0.500231643921098 0.607514142990112 0.999536712157803 hm5C_site_31379 DeepMRMD:0.607514142990112;iRNA_m5C:0.999536712157803 31380 chr4 88047336 88047336 1 + C T PAAD 88047316 + 88047296 88047336 41 CCCGCCACCCGTGTCCTCGTCCTCCCAGAAGCCAGCCAAGC CCCGCCACCCGTGTCCTCGTCCTCCCAGAAGCCAGCCAAGT < 41bp 1 0.0314926623861213 1 0.0901947617530823 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFF1 ENSG00000172493 CDS Human protein_coding chr4:88047316 chr4:88047336 nonsynonymous SNV 0.764 0 41 hm5C_associated_SNPs_31272 0 0 1 0 1 Nucleus 1 0.500231643906667 1 0.999536712186666 hm5C_site_31380 DeepMRMD:1;iRNA_m5C:0.999536712186666 31381 chr22 29533635 29533635 1 + G A PAAD 29533628 + 29533608 29533648 41 TATTTCTTCTCTGATCGCATCAATCAGGCCCAGGGATTTGC TATTTCTTCTCTGATCGCATCAATCAGACCCAGGGATTTGC < 41bp 1 0.0271977566099937 1 0.0666908025741577 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533628 chr22:29533635 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_31273 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921182 1 0.999536712157637 hm5C_site_31381 DeepMRMD:1;iRNA_m5C:0.999536712157637 31382 chr17 4621244 4621244 1 + C T PAAD 4621233 + 4621213 4621253 41 GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGCCTTCAGCCG GCAGTTCGCCCCGGAGAAACCCGGCCCCCAGTCTTCAGCCG < 41bp 1 0.592513497531132 1 0.612009882926941 experiment 0.814973004937736 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4621233 chr17:4621244 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_31274 0 0 0 0 2 Cytosol 1 0.500231643921092 0.775980234146118 0.999536712157815 hm5C_site_31382 DeepMRMD:0.775980234146118;iRNA_m5C:0.999536712157815 31383 chr4 119200407 119200407 1 + A G PAAD 119200388 + 119200368 119200408 41 CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATAT CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATGT < 41bp 1 0.0449736152079137 1 0.451236963272095 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200388 chr4:119200407 . . 0 40 hm5C_associated_SNPs_31275 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31383 DeepMRMD:1;iRNA_m5C:0.999536712157815 31384 chr4 119200407 119200407 1 + A G PAAD 119200389 + 119200369 119200409 41 AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATATC AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATGTC < 41bp 1 0.269991252086286 1 0.0901718437671661 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200389 chr4:119200407 . . 0 39 hm5C_associated_SNPs_31276 0 0 1 2 0 unknown 1 0.500231643920083 1 0.999536712159835 hm5C_site_31384 DeepMRMD:1;iRNA_m5C:0.999536712159835 31385 chr10 112335133 112335133 1 + G A PAAD 112335144 + 112335124 112335164 41 GTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG GTCATCTTCATCCAGAACAGCGGTTGGCTTTATTGCATGTG < 41bp 1 0.186254293253178 1 0.114853501319885 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335144 chr10:112335133 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_31277 0 0 1 0 2 Ribosome 1 0.500231643915304 1 0.999536712169392 hm5C_site_31385 DeepMRMD:1;iRNA_m5C:0.999536712169392 31386 chr1 1222152 1222152 1 + A G PAAD 1222163 + 1222143 1222183 41 CCCAGGCCGAGTCCGGTCCTCCGCCATCTGGAGCTGCTGGA CCCAGGCCGGGTCCGGTCCTCCGCCATCTGGAGCTGCTGGA < 41bp 1 0.191437325266447 1 0.36424994468689 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222163 chr1:1222152 nonsynonymous SNV 0.005 0 10 hm5C_associated_SNPs_31278 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31386 DeepMRMD:1;iRNA_m5C:0.999536712157815 31387 chr20 36662454 36662454 1 + G A PAAD 36662465 + 36662445 36662485 41 CCACCGCAAGCACGCGGGACCCATCGTCTCCGTGTGGCACC CCACCGCAAACACGCGGGACCCATCGTCTCCGTGTGGCACC < 41bp 1 0.129741090146959 1 0.0243767201900482 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36662465 chr20:36662454 synonymous SNV . 0 10 hm5C_associated_SNPs_31279 0 0 1 0 1 Ribosome 1 0.500231643929698 1 0.999536712140604 hm5C_site_31387 DeepMRMD:1;iRNA_m5C:0.999536712140604 31388 chr5 179193073 179193073 1 + C A PAAD 179193078 + 179193058 179193098 41 CACCTCTGGTCAGCCCCGGGCGGACAATCCCAGTCCAAACC CACCTCTGGTCAGCCACGGGCGGACAATCCCAGTCCAAACC < 41bp 1 0.126442119903049 1 0.429622948169708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAML1 ENSG00000161021 CDS Human protein_coding chr5:179193078 chr5:179193073 synonymous SNV . 0 16 hm5C_associated_SNPs_31280 0 0 1 0 0 Ribosome 1 0.500231643925543 1 0.999536712148913 hm5C_site_31388 DeepMRMD:1;iRNA_m5C:0.999536712148913 31389 chr19 3151773 3151773 1 + G T PAAD 3151786 + 3151766 3151806 41 CTCCGCAGCCGCATGCCCACCACTGGCATCAACGAGTACTG CTCCGCATCCGCATGCCCACCACTGGCATCAACGAGTACTG < 41bp 1 0.376704068356761 1 0.0948977172374725 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151786 chr19:3151773 nonsynonymous SNV 0.870 1 8 hm5C_associated_SNPs_31281 0 0 0 0 2 exosome 1 0.500231646327724 1 0.999536707344552 hm5C_site_31389 DeepMRMD:1;iRNA_m5C:0.999536707344552 31390 chr9 131198036 131198036 1 + G A PAAD 131198051 + 131198031 131198071 41 GCTCAGTGACACGGAGACATCCTCTCCATGGGATGATGACA GCTCAATGACACGGAGACATCCTCTCCATGGGATGATGACA < 41bp 1 0.0447513052010078 1 0.0277771353721619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131198051 chr9:131198036 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_31282 0 0 1 0 0 chromatin 1 0.500231643922941 1 0.999536712154118 hm5C_site_31390 DeepMRMD:1;iRNA_m5C:0.999536712154118 31391 chr9 131198036 131198036 1 + G A PAAD 131198054 + 131198034 131198074 41 CAGTGACACGGAGACATCCTCTCCATGGGATGATGACAGCG CAATGACACGGAGACATCCTCTCCATGGGATGATGACAGCG < 41bp 1 0.698147052557319 1 0.965308964252472 experiment 0.603705894885362 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131198054 chr9:131198036 nonsynonymous SNV 1.000 5 3 hm5C_associated_SNPs_31283 0 0 1 0 0 chromatin 1 0.500231375024556 0.0693820714950559 0.999537249950887 hm5C_site_31391 DeepMRMD:0.0693820714950559;iRNA_m5C:0.999537249950887 31392 chr17 7800528 7800528 1 + C A PAAD 7800537 + 7800517 7800557 41 AGTGAAAGACCCGCACTATGCTGAGATGGAGGAGAAGTACT AGTGAAAGACCAGCACTATGCTGAGATGGAGGAGAAGTACT < 41bp 1 0.489779495191723 1 0.504289925098419 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7800537 chr17:7800528 nonsynonymous SNV 0.945 3 12 hm5C_associated_SNPs_31284 0 0 1 0 1 Cytosol 1 0.500231643896883 0.991420149803162 0.999536712206234 hm5C_site_31392 DeepMRMD:0.991420149803162;iRNA_m5C:0.999536712206234 31393 chr7 39991439 39991439 1 + G T PAAD 39991428 + 39991408 39991448 41 AGCAGCTGGCGCCGCTCTCGCAGTCCCTACAGCCCTGTGCT AGCAGCTGGCGCCGCTCTCGCAGTCCCTACATCCCTGTGCT < 41bp 1 0.244430472471818 1 0.71311616897583 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:39991428 chr7:39991439 nonsynonymous SNV 0.992 1 32 hm5C_associated_SNPs_31285 0 0 1 0 1 Nucleus 1 0.500231643934665 0.57376766204834 0.999536712130669 hm5C_site_31393 DeepMRMD:0.57376766204834;iRNA_m5C:0.999536712130669 31394 chr17 38610230 38610230 1 + C T PAAD 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCTGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT < 41bp 1 0.361102458911334 1 0.0991674065589905 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610230 synonymous SNV . 0 3 hm5C_associated_SNPs_31286 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31394 DeepMRMD:1;iRNA_m5C:0.999536712157815 31395 chr19 12924273 12924273 1 + G T PAAD 12924253 + 12924233 12924273 41 CACCGATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAG CACCGATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAT < 41bp 1 0.558371306206363 1 0.263803064823151 experiment 0.883257387587275 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924253 chr19:12924273 nonsynonymous SNV 0.730 1 41 hm5C_associated_SNPs_31287 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31395 DeepMRMD:1;iRNA_m5C:0.999536712157815 31396 chr19 12924273 12924273 1 + G T PAAD 12924277 + 12924257 12924297 41 CTGGAGTCAGCAACCAGCCTCTAGCAGCTGCCTCTACGCGC CTGGAGTCAGCAACCATCCTCTAGCAGCTGCCTCTACGCGC < 41bp 1 0.508503232671639 1 0.21572157740593 experiment 0.982993534656722 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924277 chr19:12924273 nonsynonymous SNV 0.730 1 17 hm5C_associated_SNPs_31288 0 0 1 0 0 Ribosome 1 0.500231731291768 1 0.999536537416463 hm5C_site_31396 DeepMRMD:1;iRNA_m5C:0.999536537416463 31397 chr6 148808758 148808758 1 + A G PAAD 148808768 + 148808748 148808788 41 AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC AGCTCAAGGAGTACGAGGCCCAGCACCGGCAGTCGGCTGCC < 41bp 1 0.661232997318373 1 0.33796426653862 experiment 0.677534005363253 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148808768 chr6:148808758 synonymous SNV . 0 11 hm5C_associated_SNPs_31289 0 0 0 0 2 Cytosol 1 0.500231643917778 1 0.999536712164444 hm5C_site_31397 DeepMRMD:1;iRNA_m5C:0.999536712164444 31398 chr1 214819626 214819626 1 + G A PAAD 214819612 + 214819592 214819632 41 TCAGAACTAGACAAGTTACTCTCTTCATTTAAAAGTCTGTT TCAGAACTAGACAAGTTACTCTCTTCATTTAAAAATCTGTT < 41bp 1 0.0579529923882497 1 0.134652018547058 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214819612 chr1:214819626 nonsynonymous SNV 0.010 0 35 hm5C_associated_SNPs_31290 0 0 1 0 0 Nucleus 1 0.500231643915351 1 0.999536712169298 hm5C_site_31398 DeepMRMD:1;iRNA_m5C:0.999536712169298 31399 chr7 102107909 102107909 1 + G A PAAD 102107918 + 102107898 102107938 41 AGTCCCTCAGCGAGTTCACCCAGTGGCGGGTATGTCCCTGT AGTCCCTCAGCAAGTTCACCCAGTGGCGGGTATGTCCCTGT < 41bp 1 0.358925285339342 1 0.249459981918335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102107918 chr7:102107909 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_31291 0 0 0 0 1 Ribosome 1 0.500231643918398 1 0.999536712163203 hm5C_site_31399 DeepMRMD:1;iRNA_m5C:0.999536712163203 31400 chr19 11105645 11105645 1 + C T PAAD 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGTGG < 41bp 1 0.61837081918984 1 0.733787775039673 experiment 0.763258361620321 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105645 nonsynonymous SNV 0.006 4 39 hm5C_associated_SNPs_31292 0 0 1 0 1 Nucleus 1 0.500231643921093 0.532424449920654 0.999536712157815 hm5C_site_31400 DeepMRMD:0.532424449920654;iRNA_m5C:0.999536712157815 31401 chr16 1551487 1551487 1 + G A PAAD 1551467 + 1551447 1551487 41 GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCG GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCA < 41bp 1 0.351112815932058 1 0.362650752067566 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551467 chr16:1551487 nonsynonymous SNV 0.000 1 41 hm5C_associated_SNPs_31293 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31401 DeepMRMD:1;iRNA_m5C:0.999536712157815 31402 chr6 7579637 7579637 1 + T C PAAD 7579653 + 7579633 7579673 41 CCAGTTCAAAGCGAAGCTTGCGAGCCTGGAGGAGCTGAAGA CCAGCTCAAAGCGAAGCTTGCGAGCCTGGAGGAGCTGAAGA < 41bp 1 0.302405647672582 1 0.391205310821533 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579653 chr6:7579637 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_31294 0 0 1 0 0 Nucleus 1 0.500231644063982 1 0.999536711872037 hm5C_site_31402 DeepMRMD:1;iRNA_m5C:0.999536711872037 31403 chr5 92923924 92923924 1 + C A PAAD 92923934 + 92923914 92923954 41 TACGCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCC TACGCCTCACATGGAGCGAGCTGTTCGTGCTCAACGCGGCC < 41bp 1 0.106754249684304 1 0.072956919670105 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92923934 chr5:92923924 synonymous SNV . 0 11 hm5C_associated_SNPs_31296 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31403 DeepMRMD:1;iRNA_m5C:0.999536712157815 31404 chr1 164789358 164789358 1 + C T PAAD 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATTTGTTCATGAGTGTGCAGTCACTCAA < 41bp 1 0.648002647465643 1 0.113921612501144 experiment 0.703994705068714 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789358 synonymous SNV . 0 27 hm5C_associated_SNPs_31298 0 0 0 0 2 Ribosome 1 0.500231643879737 1 0.999536712240527 hm5C_site_31404 DeepMRMD:1;iRNA_m5C:0.999536712240527 31405 chr7 79842159 79842159 1 + T A PAAD 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAAATCAAAAAGAGCCCTCACACTATATGCTATCCAG < 41bp 1 0.222738842891005 1 0.155076593160629 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842159 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_31299 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31405 DeepMRMD:1;iRNA_m5C:0.999536712157815 31406 chr12 6618917 6618917 1 + G A PAAD 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTCGAGCTCAGGGGCCCCTAGCTATGCTGCAGCACTT < 41bp 1 0.0537743420871404 1 0.0866893231868744 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618917 stopgain . 0 24 hm5C_associated_SNPs_31300 0 0 1 0 2 Nucleus 1 0.500231643882142 1 0.999536712235716 hm5C_site_31406 DeepMRMD:1;iRNA_m5C:0.999536712235716 31407 chr16 30680180 30680180 1 + G A PAAD 30680193 + 30680173 30680213 41 CTGCACCGCAGTCCTCTGACCTTTCCTGCCTGGGTCCGGCC CTGCACCACAGTCCTCTGACCTTTCCTGCCTGGGTCCGGCC < 41bp 1 0.0524571734618113 1 0.022062212228775 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBRS ENSG00000156860 CDS Human protein_coding chr16:30680193 chr16:30680180 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_31302 0 0 1 0 1 chromatin 1 0.500231643919935 1 0.99953671216013 hm5C_site_31407 DeepMRMD:1;iRNA_m5C:0.99953671216013 31408 chr1 32620216 32620216 1 + A G PAAD 32620232 + 32620212 32620252 41 GACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA GACAGTTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA < 41bp 1 0.238790697785946 1 0.445767015218735 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620232 chr1:32620216 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_31303 0 0 1 0 1 Cytosol 1 0.5002316441437 1 0.9995367117126 hm5C_site_31408 DeepMRMD:1;iRNA_m5C:0.9995367117126 31409 chr3 49719835 49719835 1 + G A PAAD 49719826 + 49719806 49719846 41 TGGCCAGGACAGCATCCTCTCCCTCCCAGGCAATGTGGGCC TGGCCAGGACAGCATCCTCTCCCTCCCAGACAATGTGGGCC < 41bp 1 0.0660501166427457 1 0.155412435531616 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49719826 chr3:49719835 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_31304 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_31409 DeepMRMD:1;iRNA_m5C:0.999536712157815 31410 chr8 33356000 33356000 1 + C T PAAD 33355999 + 33355979 33356019 41 TGAAGATCAGGATGGTAAATCCTCCAGTGAGGAGGAGGAAG TGAAGATCAGGATGGTAAATCTTCCAGTGAGGAGGAGGAAG < 41bp 1 0.297722668561165 1 0.12075001001358 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAK16 ENSG00000198042 CDS Human protein_coding chr8:33355999 chr8:33356000 synonymous SNV . 0 22 hm5C_associated_SNPs_31305 0 0 1 0 1 Cytosol 1 0.500231643880987 1 0.999536712238027 hm5C_site_31410 DeepMRMD:1;iRNA_m5C:0.999536712238027 31411 chr16 309975 309975 1 + C A PAAD 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG ATCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG < 41bp 1 0.593698888970518 1 0.0427016913890839 experiment 0.812602222058963 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309975 synonymous SNV . 0 1 hm5C_associated_SNPs_31306 0 0 1 4 1 Ribosome 1 0.500231643920233 1 0.999536712159534 hm5C_site_31411 DeepMRMD:1;iRNA_m5C:0.999536712159534 31412 chr10 75529125 75529125 1 + C A PAAD 75529135 + 75529115 75529155 41 TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCAT TTTACACCAGATGTGCAGGGCAGCGTCGGCTCCGCATCCAT < 41bp 1 0.508110663626559 1 0.120126157999039 experiment 0.983778672746882 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529135 chr10:75529125 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_31307 0 0 1 2 1 Nucleus 1 0.500231643921092 1 0.999536712157817 hm5C_site_31412 DeepMRMD:1;iRNA_m5C:0.999536712157817 31413 chr10 75529125 75529125 1 + C A PAAD 75529138 + 75529118 75529158 41 ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT ACACCAGATGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT < 41bp 1 0.443536903620494 1 0.247593432664871 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529138 chr10:75529125 nonsynonymous SNV 0.998 3 8 hm5C_associated_SNPs_31308 0 0 1 2 1 Nucleus 1 0.500231965890034 1 0.999536068219932 hm5C_site_31413 DeepMRMD:1;iRNA_m5C:0.999536068219932 31414 chr9 78506218 78506218 1 + G A PAAD 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAATCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT < 41bp 1 0.0471147295846988 1 0.0555294752120972 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506218 nonsynonymous SNV 0.997 0 4 hm5C_associated_SNPs_31309 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31414 DeepMRMD:1;iRNA_m5C:0.999536712157815 31415 chr20 42089353 42089353 1 + C T PAAD 42089358 + 42089338 42089378 41 TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCG TCCAGTTCCAGGTCGTGGAGCAAAGGTCGATCACGTTCTCG < 41bp 1 0.494417296708005 1 0.342775464057922 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089358 chr20:42089353 nonsynonymous SNV 0.994 4 16 hm5C_associated_SNPs_31310 0 0 1 0 1 Nucleus 1 0.500231643734769 1 0.999536712530462 hm5C_site_31415 DeepMRMD:1;iRNA_m5C:0.999536712530462 31416 chr8 110569174 110569174 1 + A T PAAD 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTATTATGAAGAGAGAACCATTGAATTTTGGCATCCCA < 41bp 1 0.0368316122913672 1 0.0842180550098419 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569174 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_31311 0 0 1 0 2 Ribosome 1 0.500231630876798 1 0.999536738246405 hm5C_site_31416 DeepMRMD:1;iRNA_m5C:0.999536738246405 31417 chr19 13054419 13054419 1 + C T PAAD 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGTAACGA < 41bp 1 0.551845123333885 1 0.145428597927094 experiment 0.89630975333223 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054419 synonymous SNV . 0 36 hm5C_associated_SNPs_31312 0 0 1 0 2 Ribosome 1 0.500238950104656 1 0.999522099790689 hm5C_site_31417 DeepMRMD:1;iRNA_m5C:0.999522099790689 31418 chr19 13054419 13054419 1 + C T PAAD 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGAGTTTGGTAACGAGACGTGGGGCGTAACAAAGGTGA < 41bp 1 0.68679968622335 1 0.384872108697891 experiment 0.626400627553299 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054419 synonymous SNV . 0 13 hm5C_associated_SNPs_31314 0 0 1 0 2 Ribosome 1 0.500231643941796 1 0.999536712116409 hm5C_site_31418 DeepMRMD:1;iRNA_m5C:0.999536712116409 31419 chr3 186502632 186502632 1 + G A PAAD 186502615 + 186502595 186502635 41 ATGGCAATCATCTTTCGGGACTGACCTGAAATGAAGAGAAT ATGGCAATCATCTTTCGGGACTGACCTGAAATGAAGAAAAT < 41bp 1 0.170177646535598 1 0.0827708840370178 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502615 chr3:186502632 . . 0 38 hm5C_associated_SNPs_31315 0 0 1 2 0 unknown 1 0.500232765412386 1 0.999534469175228 hm5C_site_31419 DeepMRMD:1;iRNA_m5C:0.999534469175228 31420 chr3 186502632 186502632 1 + G A PAAD 186502620 + 186502600 186502640 41 AATCATCTTTCGGGACTGACCTGAAATGAAGAGAATACTCA AATCATCTTTCGGGACTGACCTGAAATGAAGAAAATACTCA < 41bp 1 0.500814032212866 1 0.369195520877838 experiment 0.998371935574269 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502620 chr3:186502632 . . 0 33 hm5C_associated_SNPs_31316 0 0 1 2 0 unknown 1 0.50023164391309 1 0.999536712173821 hm5C_site_31420 DeepMRMD:1;iRNA_m5C:0.999536712173821 31421 chr3 186502632 186502632 1 + G A PAAD 186502637 + 186502617 186502657 41 GACCTGAAATGAAGAGAATACTCATTGCTGATCACTTGATT GACCTGAAATGAAGAAAATACTCATTGCTGATCACTTGATT < 41bp 1 0.355340633985305 1 0.127881973981857 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502637 chr3:186502632 . . 0 16 hm5C_associated_SNPs_31317 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31421 DeepMRMD:1;iRNA_m5C:0.999536712157815 31422 chr3 186502632 186502632 1 + G A PAAD 186502639 + 186502619 186502659 41 CCTGAAATGAAGAGAATACTCATTGCTGATCACTTGATTAT CCTGAAATGAAGAAAATACTCATTGCTGATCACTTGATTAT < 41bp 1 0.311160955944876 1 0.0301434695720673 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502639 chr3:186502632 . . 0 14 hm5C_associated_SNPs_31318 0 0 1 2 0 unknown 1 0.500231644081325 1 0.999536711837351 hm5C_site_31422 DeepMRMD:1;iRNA_m5C:0.999536711837351 31423 chr3 186502632 186502632 1 + G A PAAD 186502649 + 186502629 186502669 41 AGAGAATACTCATTGCTGATCACTTGATTATTTGGGCATAA AGAAAATACTCATTGCTGATCACTTGATTATTTGGGCATAA < 41bp 1 0.160750885313222 1 0.0427212119102478 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD2 ENSG00000238942 ncRNA_exonic Human snoRNA chr3:186502649 chr3:186502632 . . 0 4 hm5C_associated_SNPs_31319 0 0 1 2 0 unknown 1 0.500231643453732 1 0.999536713092536 hm5C_site_31423 DeepMRMD:1;iRNA_m5C:0.999536713092536 31424 chr7 5644983 5644983 1 + G A PAAD 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA GGCGACACTCCTGTGGACTTCTTCTTCAAGTTCTGCGACTA < 41bp 1 0.214582497534498 1 0.363358974456787 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644983 nonsynonymous SNV 0.991 2 28 hm5C_associated_SNPs_31320 0 0 1 0 1 Ribosome 1 0.500231631044816 1 0.999536737910368 hm5C_site_31424 DeepMRMD:1;iRNA_m5C:0.999536737910368 31425 chr1 22333995 22333995 1 + G A PAAD 22333990 + 22333970 22334010 41 ATGGTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGT ATGGTGTGTGCTGGAGGGTACATCCACTCCGGCTGCAACGT < 41bp 1 0.175573593438824 1 0.0877573192119598 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333990 chr1:22333995 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_31321 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643922075 1 0.99953671215585 hm5C_site_31425 DeepMRMD:1;iRNA_m5C:0.99953671215585 31426 chr1 22333995 22333995 1 + G A PAAD 22333993 + 22333973 22334013 41 GTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAG GTGTGTGCTGGAGGGTACATCCACTCCGGCTGCAACGTGAG < 41bp 1 0.29008013907495 1 0.159871131181717 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333993 chr1:22333995 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_31322 0 0 0 0 1 Endoplasmic reticulum 1 0.500231726670831 1 0.999536546658339 hm5C_site_31426 DeepMRMD:1;iRNA_m5C:0.999536546658339 31427 chr1 22333995 22333995 1 + G A PAAD 22333994 + 22333974 22334014 41 TGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGT TGTGTGCTGGAGGGTACATCCACTCCGGCTGCAACGTGAGT < 41bp 1 0.27034824878393 1 0.232624232769012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333994 chr1:22333995 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_31323 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643500112 1 0.999536712999777 hm5C_site_31427 DeepMRMD:1;iRNA_m5C:0.999536712999777 31428 chr1 22333995 22333995 1 + G A PAAD 22333998 + 22333978 22334018 41 TGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGC TGCTGGAGGGTACATCCACTCCGGCTGCAACGTGAGTCAGC < 41bp 1 0.485879535402909 1 0.557449877262115 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333998 chr1:22333995 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_31324 0 0 0 0 1 Endoplasmic reticulum 1 0.500230315651422 0.88510024547577 0.999539368697157 hm5C_site_31428 DeepMRMD:0.88510024547577;iRNA_m5C:0.999539368697157 31429 chr1 22333995 22333995 1 + G A PAAD 22333999 + 22333979 22334019 41 GCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCT GCTGGAGGGTACATCCACTCCGGCTGCAACGTGAGTCAGCT < 41bp 1 0.561316540306999 1 0.431203544139862 experiment 0.877366919386001 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333999 chr1:22333995 nonsynonymous SNV 0.001 1 17 hm5C_associated_SNPs_31325 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643893409 1 0.999536712213183 hm5C_site_31429 DeepMRMD:1;iRNA_m5C:0.999536712213183 31430 chr1 22333995 22333995 1 + G A PAAD 22334002 + 22333982 22334022 41 GGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTT GGAGGGTACATCCACTCCGGCTGCAACGTGAGTCAGCTCTT < 41bp 1 0.616753034218017 1 0.192994177341461 experiment 0.766493931563966 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334002 chr1:22333995 nonsynonymous SNV 0.001 1 14 hm5C_associated_SNPs_31326 0 0 0 0 1 Endoplasmic reticulum 1 0.50023136107982 1 0.99953727784036 hm5C_site_31430 DeepMRMD:1;iRNA_m5C:0.99953727784036 31431 chr1 22333995 22333995 1 + G A PAAD 22334005 + 22333985 22334025 41 GGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTTACC GGGTACATCCACTCCGGCTGCAACGTGAGTCAGCTCTTACC < 41bp 1 0.487713338970884 1 0.209506183862686 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334005 chr1:22333995 nonsynonymous SNV 0.001 1 11 hm5C_associated_SNPs_31327 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921127 1 0.999536712157747 hm5C_site_31431 DeepMRMD:1;iRNA_m5C:0.999536712157747 31432 chr5 68490517 68490517 1 + C A PAAD 68490522 + 68490502 68490542 41 GCAAGAAAAGCAAATCGAAGCGTATGTTATATTTAAAAATT GCAAGAAAAGCAAATAGAAGCGTATGTTATATTTAAAAATT < 41bp 1 0.188160947053469 1 0.235926926136017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPH ENSG00000153044 CDS Human protein_coding chr5:68490522 chr5:68490517 synonymous SNV . 0 16 hm5C_associated_SNPs_31328 0 0 0 0 1 Ribosome 1 0.500231649304041 1 0.999536701391919 hm5C_site_31432 DeepMRMD:1;iRNA_m5C:0.999536701391919 31433 chr7 43580819 43580819 1 + C T PAAD 43580837 + 43580817 43580857 41 GACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG GATGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG < 41bp 1 0.0367385724984085 1 0.0741919577121735 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43580837 chr7:43580819 synonymous SNV . 0 3 hm5C_associated_SNPs_31329 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31433 DeepMRMD:1;iRNA_m5C:0.999536712157815 31434 chr5 73981215 73981215 1 + C T PAAD 73981219 + 73981199 73981239 41 GGTGGCGGAGGCGGCTCGGGCCCCGAGCGTCTCGGCCAAGC GGTGGCGGAGGCGGCTTGGGCCCCGAGCGTCTCGGCCAAGC < 41bp 1 0.670796814507158 1 0.405761420726776 experiment 0.658406370985684 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control HEXB ENSG00000049860 CDS Human protein_coding chr5:73981219 chr5:73981215 nonsynonymous SNV 0.116 1 17 hm5C_associated_SNPs_31330 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31434 DeepMRMD:1;iRNA_m5C:0.999536712157815 31435 chr20 47896888 47896888 1 + C T PAAD 47896873 + 47896853 47896893 41 CCTGCTGGCATATATGATGACTTAGCTTTTTTCCCCGACAG CCTGCTGGCATATATGATGACTTAGCTTTTTTCCCTGACAG < 41bp 1 0.118212153329886 1 0.0489648580551147 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896873 chr20:47896888 . . 0 36 hm5C_associated_SNPs_31331 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_31435 DeepMRMD:1;iRNA_m5C:0.999536712157815 31436 chr20 47896888 47896888 1 + C T PAAD 47896878 + 47896858 47896898 41 TGGCATATATGATGACTTAGCTTTTTTCCCCGACAGATCGA TGGCATATATGATGACTTAGCTTTTTTCCCTGACAGATCGA < 41bp 1 0.0499229329431718 1 0.149653017520905 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896878 chr20:47896888 . . 0 31 hm5C_associated_SNPs_31332 0 0 1 0 0 unknown 1 0.50023163338569 1 0.999536733228621 hm5C_site_31436 DeepMRMD:1;iRNA_m5C:0.999536733228621 31437 chr20 47896888 47896888 1 + C T PAAD 47896885 + 47896865 47896905 41 TATGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTT TATGATGACTTAGCTTTTTTCCCTGACAGATCGACTATGTT < 41bp 1 0.0763803730467177 1 0.031457781791687 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896885 chr20:47896888 . . 0 24 hm5C_associated_SNPs_31333 0 0 1 0 0 unknown 1 0.5002316437319 1 0.9995367125362 hm5C_site_31437 DeepMRMD:1;iRNA_m5C:0.9995367125362 31438 chr20 47896888 47896888 1 + C T PAAD 47896886 + 47896866 47896906 41 ATGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTG ATGATGACTTAGCTTTTTTCCCTGACAGATCGACTATGTTG < 41bp 1 0.227046687277327 1 0.0582643747329712 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896886 chr20:47896888 . . 0 23 hm5C_associated_SNPs_31334 0 0 1 0 0 unknown 1 0.50023164403763 1 0.99953671192474 hm5C_site_31438 DeepMRMD:1;iRNA_m5C:0.99953671192474 31439 chr20 47896888 47896888 1 + C T PAAD 47896887 + 47896867 47896907 41 TGATGACTTAGCTTTTTTCCCCGACAGATCGACTATGTTGA TGATGACTTAGCTTTTTTCCCTGACAGATCGACTATGTTGA < 41bp 1 0.139742109612524 1 0.0440666973590851 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896887 chr20:47896888 . . 0 22 hm5C_associated_SNPs_31335 0 0 1 0 0 unknown 1 0.500231643921149 1 0.999536712157703 hm5C_site_31439 DeepMRMD:1;iRNA_m5C:0.999536712157703 31440 chr20 47896888 47896888 1 + C T PAAD 47896899 + 47896879 47896919 41 TTTTTTCCCCGACAGATCGACTATGTTGATCTAACTTTTCT TTTTTTCCCTGACAGATCGACTATGTTGATCTAACTTTTCT < 41bp 1 0.129756811641788 1 0.0927293300628662 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896899 chr20:47896888 . . 0 10 hm5C_associated_SNPs_31336 0 0 1 0 0 unknown 1 0.500231643837324 1 0.999536712325353 hm5C_site_31440 DeepMRMD:1;iRNA_m5C:0.999536712325353 31441 chr7 23221735 23221735 1 + C G PAAD 23221740 + 23221720 23221760 41 TTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTG TTCTTCCTTCAAGGCGGGTGCCGCTTTGGAGATCGGTGCTG < 41bp 1 0.439512728100936 1 0.229033052921295 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221740 chr7:23221735 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_31337 0 0 1 0 1 Cytosol 1 0.500231643323735 1 0.99953671335253 hm5C_site_31441 DeepMRMD:1;iRNA_m5C:0.99953671335253 31442 chr7 23221735 23221735 1 + C G PAAD 23221741 + 23221721 23221761 41 TCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCGGTGCTGG TCTTCCTTCAAGGCGGGTGCCGCTTTGGAGATCGGTGCTGG < 41bp 1 0.581063909255532 1 0.0929826200008392 experiment 0.837872181488935 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221741 chr7:23221735 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_31338 0 0 1 0 1 Cytosol 1 0.500231690876111 1 0.999536618247778 hm5C_site_31442 DeepMRMD:1;iRNA_m5C:0.999536618247778 31443 chr1 27269375 27269375 1 + T C PAAD 27269371 + 27269351 27269391 41 GCCCTATGCAGCTGGCGGTCCCTTTCTGTGTGAACTTCCGG GCCCTATGCAGCTGGCGGTCCCTTCCTGTGTGAACTTCCGG < 41bp 1 0.00999135654792157 1 0.0262914597988129 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUDC ENSG00000090273 CDS Human protein_coding chr1:27269371 chr1:27269375 nonsynonymous SNV 0.264 1 25 hm5C_associated_SNPs_31339 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31443 DeepMRMD:1;iRNA_m5C:0.999536712157815 31444 chr2 158157422 158157422 1 + C T PAAD 158157419 + 158157399 158157439 41 ACCTCACCCAGCAAAGGGAGCTGCGAAAGAAACTGAAGTGC ACCTCACCCAGCAAAGGGAGCTGTGAAAGAAACTGAAGTGC < 41bp 1 0.330342368038729 1 0.246036022901535 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158157419 chr2:158157422 stopgain 0.993 1 24 hm5C_associated_SNPs_31340 0 0 0 0 1 Exosome 1 0.500249326117477 1 0.999501347765045 hm5C_site_31444 DeepMRMD:1;iRNA_m5C:0.999501347765045 31445 chr8 54793583 54793583 1 + C T PAAD 54793600 + 54793580 54793620 41 GCACGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCG GCATGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCG < 41bp 1 0.674652224489961 1 0.238914579153061 experiment 0.650695551020077 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RGS20 ENSG00000147509 CDS Human protein_coding chr8:54793600 chr8:54793583 nonsynonymous SNV 0.704 1 4 hm5C_associated_SNPs_31341 0 0 1 0 1 chromatin 1 0.500231643428084 1 0.999536713143832 hm5C_site_31445 DeepMRMD:1;iRNA_m5C:0.999536713143832 31446 chrX 2632474 2632474 1 + G T PAAD 2632489 + 2632469 2632509 41 GTTTCGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT GTTTCTATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT < 41bp 1 0.0850871101257207 1 0.046071857213974 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2632489 chrX:2632474 nonsynonymous SNV 0.081 3 6 hm5C_associated_SNPs_31343 0 0 1 0 2 Endoplasmic reticulum 1 0.500229468620783 1 0.999541062758434 hm5C_site_31446 DeepMRMD:1;iRNA_m5C:0.999541062758434 31447 chr9 35733435 35733435 1 + T C PAAD 35733415 + 35733395 35733435 41 GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAT GATTGCTAGGCTAGTACTGACAGATGAGGAGAAGAGTCTAC < 41bp 1 0.413784616515766 1 0.204895824193954 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733415 chr9:35733435 synonymous SNV . 0 41 hm5C_associated_SNPs_31344 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643677838 1 0.999536712644325 hm5C_site_31447 DeepMRMD:1;iRNA_m5C:0.999536712644325 31448 chr11 1254409 1254409 1 + C A PAAD 1254403 + 1254383 1254423 41 GCGGGCACCTTCCTCAATGACGCGGGCGCCTGTGTGCCCGC GCGGGCACCTTCCTCAATGACGCGGGAGCCTGTGTGCCCGC < 41bp 1 0.594372056920188 1 0.903658330440521 experiment 0.811255886159623 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout MUC5B ENSG00000117983 CDS Human protein_coding chr11:1254403 chr11:1254409 synonymous SNV . 0 27 hm5C_associated_SNPs_31345 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643930138 0.192683339118958 0.999536712139723 hm5C_site_31448 DeepMRMD:0.192683339118958;iRNA_m5C:0.999536712139723 31449 chr11 67810964 67810964 1 + G T PAAD 67810957 + 67810937 67810977 41 GGAGCAGCCGCTGGAGCACCCCGTGACGGTGAGCAGCTGGC GGAGCAGCCGCTGGAGCACCCCGTGACTGTGAGCAGCTGGC < 41bp 1 0.222546910896635 1 0.451175272464752 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67810957 chr11:67810964 synonymous SNV . 0 28 hm5C_associated_SNPs_31346 0 0 1 0 1 Nucleus 1 0.500231212784813 1 0.999537574430374 hm5C_site_31449 DeepMRMD:1;iRNA_m5C:0.999537574430374 31450 chr9 95869990 95869990 1 + G A PAAD 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CCGCCTGGTGCAGGACACACCTTTCCTGACAGGCCATGGGC < 41bp 1 0.0756340923083865 1 0.10735297203064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95869990 synonymous SNV . 0 19 hm5C_associated_SNPs_31347 0 0 1 0 1 Ribosome 1 0.500231643908799 1 0.999536712182401 hm5C_site_31450 DeepMRMD:1;iRNA_m5C:0.999536712182401 31451 chr11 473950 473950 1 + G A PAAD 473956 + 473936 473976 41 TCACACAAGCTAAAGACGGGCCATTTTCCAGACCTCATCCA TCACACAAGCTAAAAACGGGCCATTTTCCAGACCTCATCCA < 41bp 1 0.0258045529739431 1 0.0180736184120178 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:473956 chr11:473950 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_31348 0 0 0 0 2 Ribosome 1 0.500231620176683 1 0.999536759646635 hm5C_site_31451 DeepMRMD:1;iRNA_m5C:0.999536759646635 31452 chr4 7533314 7533314 1 + C T PAAD 7533294 + 7533274 7533314 41 CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACT < 41bp 1 0.557564607570793 1 0.975684762001038 experiment 0.884870784858414 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7533294 chr4:7533314 synonymous SNV . 0 41 hm5C_associated_SNPs_31350 0 0 0 0 2 nucleus 1 0.500231719292779 0.0486304759979239 0.999536561414441 hm5C_site_31452 DeepMRMD:0.0486304759979239;iRNA_m5C:0.999536561414441 31453 chr1 154207157 154207157 1 + C A PAAD 154207147 + 154207127 154207167 41 ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGGGA ACGGAATCCAATGAGGAAGGCAAAGAAAATAGAGACCGGGA < 41bp 1 0.430217841429471 1 0.411491364240646 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207147 chr1:154207157 synonymous SNV . 0 31 hm5C_associated_SNPs_31351 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31453 DeepMRMD:1;iRNA_m5C:0.999536712157815 31454 chr18 48604705 48604705 1 + G A PAAD 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAAAGGCTGAGGACCGGATTACCCAAGACAGAGCA < 41bp 1 0.458473442082879 1 0.731878042221069 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604705 stopgain 0.998 1 16 hm5C_associated_SNPs_31352 1 0 1 0 1 Cytosol 1 0.500231643921092 0.536243915557862 0.999536712157815 hm5C_site_31454 DeepMRMD:0.536243915557862;iRNA_m5C:0.999536712157815 Juvenile polyposis syndrome Juvenile polyposis syndrome 31455 chr7 43810766 43810766 1 + A T PAAD 43810765 + 43810745 43810785 41 GGAAGAGACCAAGATGAATGCAGAGGTGAGTTCTTTACAAA GGAAGAGACCAAGATGAATGCTGAGGTGAGTTCTTTACAAA < 41bp 1 0.696926903910173 1 0.502149820327759 experiment 0.606146192179655 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BLVRA ENSG00000106605 CDS Human protein_coding chr7:43810765 chr7:43810766 synonymous SNV . 0 22 hm5C_associated_SNPs_31353 0 0 1 0 2 Ribosome 1 0.500231643870314 0.995700359344482 0.999536712259371 hm5C_site_31455 DeepMRMD:0.995700359344482;iRNA_m5C:0.999536712259371 31456 chr7 142458439 142458439 1 + T C PAAD 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGCTGGGGGCTACAACTGTGA < 41bp 1 0.451318751441227 1 0.166263580322266 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458439 nonsynonymous SNV 0.200 3 23 hm5C_associated_SNPs_31355 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31456 DeepMRMD:1;iRNA_m5C:0.999536712157815 31457 chr7 142458439 142458439 1 + T C PAAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGCTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.353277703253588 1 0.437577098608017 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458439 nonsynonymous SNV 0.200 3 14 hm5C_associated_SNPs_31356 0 0 0 0 1 Cytosol 1 0.500231643921156 1 0.999536712157687 hm5C_site_31457 DeepMRMD:1;iRNA_m5C:0.999536712157687 31458 chr7 142458439 142458439 1 + T C PAAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGCTGGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.177459193445648 1 0.190087109804153 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458439 nonsynonymous SNV 0.200 3 11 hm5C_associated_SNPs_31357 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31458 DeepMRMD:1;iRNA_m5C:0.999536712157815 31459 chr7 142458439 142458439 1 + T C PAAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGCTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.39825047370171 1 0.340169847011566 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458439 nonsynonymous SNV 0.200 3 8 hm5C_associated_SNPs_31358 0 0 0 0 1 Cytosol 1 0.500231653090749 1 0.999536693818502 hm5C_site_31459 DeepMRMD:1;iRNA_m5C:0.999536693818502 31460 chr11 58347089 58347089 1 + G A PAAD 58347094 + 58347074 58347114 41 GCAAGAAGAGTCCGCGACTCCTGTGAGTAACAGTCTTTCAG GCAAGAAGAGTCCGCAACTCCTGTGAGTAACAGTCTTTCAG < 41bp 1 0.699294152960504 1 0.217726081609726 experiment 0.601411694078991 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58347094 chr11:58347089 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_31359 0 0 1 0 1 chromatin 1 0.500231643442617 1 0.999536713114766 hm5C_site_31460 DeepMRMD:1;iRNA_m5C:0.999536713114766 31461 chr11 61897787 61897787 1 + C T PAAD 61897785 + 61897765 61897805 41 AAGCTCAGGATTGCGCAGGTCTCCCCTGGCCCACGGGACTC AAGCTCAGGATTGCGCAGGTCTTCCCTGGCCCACGGGACTC < 41bp 1 0.178012836306778 1 0.0397676229476929 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897785 chr11:61897787 nonsynonymous SNV 0.034 2 23 hm5C_associated_SNPs_31360 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31461 DeepMRMD:1;iRNA_m5C:0.999536712157815 31462 chr1 46073323 46073323 1 + G A PAAD 46073326 + 46073306 46073346 41 AGAAAAATCAGTTTCTGGAACTGATGTCCAAGAAGAGTGCA AGAAAAATCAGTTTCTGAAACTGATGTCCAAGAAGAGTGCA < 41bp 1 0.548300091270172 1 0.100716769695282 experiment 0.903399817459656 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46073326 chr1:46073323 nonsynonymous SNV 0.448 2 18 hm5C_associated_SNPs_31361 0 0 1 0 0 Nucleus 1 0.500231701513196 1 0.999536596973607 hm5C_site_31462 DeepMRMD:1;iRNA_m5C:0.999536596973607 31463 chr1 46073323 46073323 1 + G A PAAD 46073334 + 46073314 46073354 41 CAGTTTCTGGAACTGATGTCCAAGAAGAGTGCAGAGAAAAA CAGTTTCTGAAACTGATGTCCAAGAAGAGTGCAGAGAAAAA < 41bp 1 0.585713562564315 1 0.691026329994202 experiment 0.828572874871371 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46073334 chr1:46073323 nonsynonymous SNV 0.448 2 10 hm5C_associated_SNPs_31362 0 0 1 0 0 Nucleus 1 0.500231576874332 0.617947340011596 0.999536846251337 hm5C_site_31463 DeepMRMD:0.617947340011596;iRNA_m5C:0.999536846251337 31464 chr2 171818252 171818252 1 + A C PAAD 171818251 + 171818231 171818271 41 ACCAATGAATCCAGCTACTACATTACCAGGTAACCACCAGG ACCAATGAATCCAGCTACTACCTTACCAGGTAACCACCAGG < 41bp 1 0.0704670744971442 1 0.125041037797928 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818251 chr2:171818252 synonymous SNV . 0 22 hm5C_associated_SNPs_31363 0 0 1 0 2 Ribosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_31464 DeepMRMD:1;iRNA_m5C:0.999536712157806 31465 chr7 100204241 100204241 1 + C T PAAD 100204239 + 100204219 100204259 41 TCCGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT TCCGGAGAAAACAGAGGAATCTTCTTCAGCCCCTGGTGAGT < 41bp 1 0.158091835570243 1 0.0828092098236084 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204239 chr7:100204241 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_31364 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920762 1 0.999536712158476 hm5C_site_31465 DeepMRMD:1;iRNA_m5C:0.999536712158476 31466 chr20 42695426 42695426 1 + A T PAAD 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCTTCCAA < 41bp 1 0.420164031377042 1 0.18125307559967 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695426 nonsynonymous SNV 0.905 0 36 hm5C_associated_SNPs_31365 0 0 0 0 2 exosome 1 0.500231644373999 1 0.999536711252002 hm5C_site_31466 DeepMRMD:1;iRNA_m5C:0.999536711252002 31467 chr17 38320039 38320039 1 + C T PAAD 38320033 + 38320013 38320053 41 GCAGACTTCTGTGAGGGATCCATCTCCAGAAGCAGATGCTC GCAGACTTCTGTGAGGGATCCATCTCTAGAAGCAGATGCTC < 41bp 1 0.206711384589878 1 0.0281947553157806 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320033 chr17:38320039 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_31366 0 0 1 0 0 Ribosome 1 0.500231643841738 1 0.999536712316525 hm5C_site_31467 DeepMRMD:1;iRNA_m5C:0.999536712316525 31468 chr17 38320039 38320039 1 + C T PAAD 38320054 + 38320034 38320074 41 ATCTCCAGAAGCAGATGCTCCAGTGCTTGGCAGTCCTGAGA ATCTCTAGAAGCAGATGCTCCAGTGCTTGGCAGTCCTGAGA < 41bp 1 0.474978910019246 1 0.569097816944122 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320054 chr17:38320039 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_31367 0 0 1 0 0 Ribosome 1 0.500233560784601 0.861804366111756 0.999532878430798 hm5C_site_31468 DeepMRMD:0.861804366111756;iRNA_m5C:0.999532878430798 31469 chr17 38320039 38320039 1 + C T PAAD 38320059 + 38320039 38320079 41 CAGAAGCAGATGCTCCAGTGCTTGGCAGTCCTGAGAAGGAA TAGAAGCAGATGCTCCAGTGCTTGGCAGTCCTGAGAAGGAA < 41bp 1 0.399619830163622 1 0.0981243848800659 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320059 chr17:38320039 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_31368 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31469 DeepMRMD:1;iRNA_m5C:0.999536712157815 31470 chr16 16150130 16150130 1 + C T PAAD 16150150 + 16150130 16150170 41 CCTGGGTCTGCACGCCCTTTCTGGTGAGTGAAGCCACATTT TCTGGGTCTGCACGCCCTTTCTGGTGAGTGAAGCCACATTT < 41bp 1 0.69495163404404 1 0.616272330284119 experiment 0.610096731911921 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16150150 chr16:16150130 nonsynonymous SNV 0.955 4 1 hm5C_associated_SNPs_31369 0 0 1 0 1 Mitochondrion 1 0.500231643921095 0.767455339431762 0.99953671215781 hm5C_site_31470 DeepMRMD:0.767455339431762;iRNA_m5C:0.99953671215781 31471 chr15 40756141 40756141 1 + C G PAAD 40756137 + 40756117 40756157 41 ACAATCCGAGTCCGGGACACCGTCCTTCTCAAATCAGGCCC ACAATCCGAGTCCGGGACACCGTCGTTCTCAAATCAGGCCC < 41bp 1 0.503727361964104 1 0.150436878204346 experiment 0.992545276071792 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756137 chr15:40756141 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_31370 0 0 0 0 2 chromatin 1 0.5002316439211 1 0.999536712157799 hm5C_site_31471 DeepMRMD:1;iRNA_m5C:0.999536712157799 31472 chr5 140573647 140573647 1 + G A PAAD 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATCAACACGGACAACGGCCACCTGTTCGCCCTCAGGTC < 41bp 1 0.178218741418829 1 0.0573662221431732 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573647 nonsynonymous SNV 0.070 0 10 hm5C_associated_SNPs_31371 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31472 DeepMRMD:1;iRNA_m5C:0.999536712157815 31473 chr12 132547144 132547144 1 + G A PAAD 132547130 + 132547110 132547150 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG AGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAG < 41bp 1 0.491773320171581 1 0.709920942783356 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132547130 chr12:132547144 synonymous SNV . 0 35 hm5C_associated_SNPs_31372 0 0 0 0 0 Cytosol 1 0.50023401871741 0.580158114433288 0.999531962565179 hm5C_site_31473 DeepMRMD:0.580158114433288;iRNA_m5C:0.999531962565179 31474 chr16 29819148 29819148 1 + C T PAAD 29819141 + 29819121 29819161 41 TGCTCCCACTGTGGCAAGAGCTTCTCCCGGTGTGCACGGGG TGCTCCCACTGTGGCAAGAGCTTCTCCTGGTGTGCACGGGG < 41bp 1 0.122830054567178 1 0.118446946144104 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29819141 chr16:29819148 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_31373 0 0 1 0 1 Cytosol 1 0.500231643917593 1 0.999536712164814 hm5C_site_31474 DeepMRMD:1;iRNA_m5C:0.999536712164814 31475 chr16 2569716 2569716 1 + C T PCPG 2569701 + 2569681 2569721 41 CTCATCTTCGCCGAGGTGCTCGGCCTCTACGGTCTCATCGT CTCATCTTCGCCGAGGTGCTCGGCCTCTACGGTCTTATCGT < 41bp 1 0.449278139500731 1 0.467565715312958 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569701 chr16:2569716 synonymous SNV . 0 36 hm5C_associated_SNPs_31375 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921404 1 0.999536712157191 hm5C_site_31475 DeepMRMD:1;iRNA_m5C:0.999536712157191 31476 chr2 235950986 235950986 1 + G A PCPG 235950995 + 235950975 235951015 41 TGCAGCTGTGGGGGAAGCACCAGTTCGTTTTGTCCAGGCCC TGCAGCTGTGGAGGAAGCACCAGTTCGTTTTGTCCAGGCCC < 41bp 1 0.188282675048772 1 0.629595994949341 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235950995 chr2:235950986 nonsynonymous SNV 0.992 4 12 hm5C_associated_SNPs_31376 0 0 0 0 0 cytosol 1 0.500231643921092 0.740808010101318 0.999536712157815 hm5C_site_31476 DeepMRMD:0.740808010101318;iRNA_m5C:0.999536712157815 31477 chr17 29554565 29554565 1 + T A PCPG 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AAAGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA < 41bp 1 0.104130429213277 1 0.0754954516887665 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554565 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_31377 0 0 1 0 2 Nucleus 1 0.500231643921088 1 0.999536712157823 hm5C_site_31477 DeepMRMD:1;iRNA_m5C:0.999536712157823 31478 chr17 37822231 37822231 1 + G A PCPG 37822248 + 37822228 37822268 41 GGTGGCCAGTGTGTGGACCGCCAGGAGGTGGCTGAGATCAC GGTAGCCAGTGTGTGGACCGCCAGGAGGTGGCTGAGATCAC < 41bp 1 0.63588405815863 1 0.527587831020355 experiment 0.728231883682741 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCAP ENSG00000173991 CDS Human protein_coding chr17:37822248 chr17:37822231 nonsynonymous SNV 1.000 5 4 hm5C_associated_SNPs_31378 0 0 0 0 0 Endoplasmic reticulum 1 0.500231596992525 0.94482433795929 0.999536806014951 hm5C_site_31478 DeepMRMD:0.94482433795929;iRNA_m5C:0.999536806014951 31479 chr15 52339183 52339183 1 + C T PCPG 52339181 + 52339161 52339201 41 GATAGGTGACTTTGGTCTTGCACGGATCATGGATCCTCATT GATAGGTGACTTTGGTCTTGCATGGATCATGGATCCTCATT < 41bp 1 0.580525755434437 1 0.243615359067917 experiment 0.838948489131126 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52339181 chr15:52339183 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_31379 0 0 1 0 1 Ribosome 1 0.500231639122939 1 0.999536721754122 hm5C_site_31479 DeepMRMD:1;iRNA_m5C:0.999536721754122 31480 chr2 46607406 46607406 1 + A G PCPG 46607394 + 46607374 46607414 41 CAATGAGCTGGACTTGGAGACACTGGCACCCTATATCCCCA CAATGAGCTGGACTTGGAGACACTGGCACCCTGTATCCCCA < 41bp 1 0.339188955312691 1 0.150430858135223 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607394 chr2:46607406 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_31380 0 0 1 0 1 Cytosol 1 0.50023164525135 1 0.999536709497301 hm5C_site_31480 DeepMRMD:1;iRNA_m5C:0.999536709497301 31481 chr10 115661652 115661652 1 + C A PCPG 115661650 + 115661630 115661670 41 CTCGTAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCAC CTCGTAGGAGGAGAAAGAGACCACATGGTAATGACAGTCAC < 41bp 1 0.683933769537 1 0.234959602355957 experiment 0.632132460926 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661650 chr10:115661652 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_31381 0 0 1 0 1 Nucleus 1 0.500231643955554 1 0.999536712088892 hm5C_site_31481 DeepMRMD:1;iRNA_m5C:0.999536712088892 31482 chr10 115661652 115661652 1 + C A PCPG 115661651 + 115661631 115661671 41 TCGTAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCACT TCGTAGGAGGAGAAAGAGACCACATGGTAATGACAGTCACT < 41bp 1 0.492962702857516 1 0.516550719738007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661651 chr10:115661652 nonsynonymous SNV 0.974 4 22 hm5C_associated_SNPs_31382 0 0 1 0 1 Nucleus 1 0.500231593820722 0.966898560523986 0.999536812358556 hm5C_site_31482 DeepMRMD:0.966898560523986;iRNA_m5C:0.999536812358556 31483 chr9 130197489 130197489 1 + C T PCPG 130197488 + 130197468 130197508 41 GGAAAGTCCAGGAGCCTTGTCCTACTAGGTAAGGAAACTGT GGAAAGTCCAGGAGCCTTGTCTTACTAGGTAAGGAAACTGT < 41bp 1 0.0708582562942933 1 0.0426547527313232 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF79 ENSG00000196152 CDS Human protein_coding chr9:130197488 chr9:130197489 synonymous SNV . 0 22 hm5C_associated_SNPs_31383 0 0 1 0 1 cytosol 1 0.500231643742571 1 0.999536712514858 hm5C_site_31483 DeepMRMD:1;iRNA_m5C:0.999536712514858 31484 chr19 14574926 14574926 1 + G A PCPG 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAAAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.0562652761111307 1 0.226233571767807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574926 synonymous SNV . 0 5 hm5C_associated_SNPs_31384 0 0 1 0 2 Ribosome 1 0.500231643921091 1 0.999536712157819 hm5C_site_31484 DeepMRMD:1;iRNA_m5C:0.999536712157819 31485 chr2 46607400 46607400 1 + C T PCPG 46607394 + 46607374 46607414 41 CAATGAGCTGGACTTGGAGACACTGGCACCCTATATCCCCA CAATGAGCTGGACTTGGAGACACTGGTACCCTATATCCCCA < 41bp 1 0.396521405018456 1 0.138660818338394 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607394 chr2:46607400 nonsynonymous SNV 1.000 5 27 hm5C_associated_SNPs_31385 0 0 1 0 1 Cytosol 1 0.500231643946766 1 0.999536712106468 hm5C_site_31485 DeepMRMD:1;iRNA_m5C:0.999536712106468 31486 chr2 46607402 46607402 1 + C T PCPG 46607394 + 46607374 46607414 41 CAATGAGCTGGACTTGGAGACACTGGCACCCTATATCCCCA CAATGAGCTGGACTTGGAGACACTGGCATCCTATATCCCCA < 41bp 1 0.317929900688158 1 0.132356822490692 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607394 chr2:46607402 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_31386 0 0 1 0 1 Cytosol 1 0.500231643859533 1 0.999536712280934 hm5C_site_31486 DeepMRMD:1;iRNA_m5C:0.999536712280934 31487 chr2 46607403 46607403 1 + C T PCPG 46607394 + 46607374 46607414 41 CAATGAGCTGGACTTGGAGACACTGGCACCCTATATCCCCA CAATGAGCTGGACTTGGAGACACTGGCACTCTATATCCCCA < 41bp 1 0.28909532361758 1 0.16081503033638 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607394 chr2:46607403 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_31387 0 0 1 0 1 Cytosol 1 0.500231768130203 1 0.999536463739594 hm5C_site_31487 DeepMRMD:1;iRNA_m5C:0.999536463739594 31488 chr19 36579971 36579971 1 + G T PCPG 36579965 + 36579945 36579985 41 AGAGACATCCAGATGATCAGCTGTGGGGCTGACAAGAGCAT AGAGACATCCAGATGATCAGCTGTGGTGCTGACAAGAGCAT < 41bp 1 0.27666932174229 1 0.170216083526611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579965 chr19:36579971 synonymous SNV . 0 27 hm5C_associated_SNPs_31388 0 0 1 0 2 Nucleus 1 0.500230930405397 1 0.999538139189206 hm5C_site_31488 DeepMRMD:1;iRNA_m5C:0.999538139189206 31489 chr20 30366768 30366768 1 + G T PCPG 30366771 + 30366751 30366791 41 AACAGATATCATTTGAGGAGCAAGAAGGATGATATTAGTAA AACAGATATCATTTGAGTAGCAAGAAGGATGATATTAGTAA < 41bp 1 0.597795949848354 1 0.287963032722473 experiment 0.804408100303292 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30366771 chr20:30366768 nonsynonymous SNV 0.996 4 18 hm5C_associated_SNPs_31389 0 0 1 0 1 Cytosol 1 0.500225485424407 1 0.999549029151185 hm5C_site_31489 DeepMRMD:1;iRNA_m5C:0.999549029151185 31490 chr13 28854620 28854620 1 + A T PCPG 28854635 + 28854615 28854655 41 ATTTTATACTCAATTGGATGCTGCTCAAATGAGAAATGATG ATTTTTTACTCAATTGGATGCTGCTCAAATGAGAAATGATG < 41bp 1 0.135547533801572 1 0.141248971223831 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAN3 ENSG00000152520 CDS Human protein_coding chr13:28854635 chr13:28854620 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_31390 0 0 1 0 2 Ribosome 1 0.500231655588959 1 0.999536688822081 hm5C_site_31490 DeepMRMD:1;iRNA_m5C:0.999536688822081 31491 chrX 107930801 107930801 1 + C A PCPG 107930815 + 107930795 107930835 41 GGATTTCTTATTACACGCCACAGCCAGACAACGGATGCACC GGATTTATTATTACACGCCACAGCCAGACAACGGATGCACC < 41bp 1 0.0827689875493947 1 0.0741916596889496 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107930815 chrX:107930801 nonsynonymous SNV 0.996 2 7 hm5C_associated_SNPs_31391 0 0 0 0 1 Ribosome 1 0.500231643921197 1 0.999536712157606 hm5C_site_31491 DeepMRMD:1;iRNA_m5C:0.999536712157606 31492 chr16 1551468 1551468 1 + C G PCPG 1551467 + 1551447 1551487 41 GCTGCTGGCCTTGGCCTCCCCCCAGCCTGCGGGTGACGGCG GCTGCTGGCCTTGGCCTCCCCGCAGCCTGCGGGTGACGGCG < 41bp 1 0.659252759091568 1 0.744426250457764 experiment 0.681494481816864 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551467 chr16:1551468 synonymous SNV . 0 22 hm5C_associated_SNPs_31392 0 0 1 0 2 Cytosol 1 0.500231643921092 0.511147499084472 0.999536712157815 hm5C_site_31492 DeepMRMD:0.511147499084472;iRNA_m5C:0.999536712157815 31493 chr16 2732747 2732747 1 + G A PCPG 2732745 + 2732725 2732765 41 GGCAGACCCTGTGCCGGGACCCGAAATCCTTCCTGTACCGC GGCAGACCCTGTGCCGGGACCCAAAATCCTTCCTGTACCGC < 41bp 1 0.36149958884602 1 0.308103203773499 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2732745 chr16:2732747 synonymous SNV . 0 23 hm5C_associated_SNPs_31393 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_31493 DeepMRMD:1;iRNA_m5C:0.999536712157816 31494 chr5 138651823 138651823 1 + C T PCPG 138651827 + 138651807 138651847 41 AGGAATTCTGGGACCTCCACCTCCCTCATTTCATCTTGGGG AGGAATTCTGGGACCTTCACCTCCCTCATTTCATCTTGGGG < 41bp 1 0.333448366852707 1 0.447630256414413 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MATR3 ENSG00000015479 CDS Human protein_coding chr5:138651827 chr5:138651823 nonsynonymous SNV 0.988 3 17 hm5C_associated_SNPs_31394 0 0 1 0 2 Nucleus 1 0.500231643926442 1 0.999536712147115 hm5C_site_31494 DeepMRMD:1;iRNA_m5C:0.999536712147115 31495 chr2 231931688 231931688 1 + C A PCPG 231931696 + 231931676 231931716 41 GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATCGT GGAGAAAAAAAAACAATTGACCAGAGATTGGAAGGCATCGT < 41bp 1 0.571035527246587 1 0.0851923227310181 experiment 0.857928945506825 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931696 chr2:231931688 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_31395 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_31495 DeepMRMD:1;iRNA_m5C:0.999536712157814 31496 chr5 21491513 21491513 1 + G A PCPG 21491518 + 21491498 21491538 41 TCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGG TCAGAAAACAAAGTCATGGACAACCAGGCTGGGACCCAGGG < 41bp 1 0.137841923727441 1 0.0885415971279144 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21491518 chr5:21491513 . . 0 16 hm5C_associated_SNPs_31396 0 0 1 0 1 unknown 1 0.500231643912552 1 0.999536712174895 hm5C_site_31496 DeepMRMD:1;iRNA_m5C:0.999536712174895 31497 chr20 60701439 60701439 1 + G T PCPG 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTACGTCCCGCTGGCGGCCAGCTCCCTGCTCAGCC < 41bp 1 0.604538324658357 1 0.304646730422974 experiment 0.790923350683286 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701439 nonsynonymous SNV 0.919 2 12 hm5C_associated_SNPs_31397 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31497 DeepMRMD:1;iRNA_m5C:0.999536712157815 31498 chr2 28550178 28550178 1 + G A PCPG 28550197 + 28550177 28550217 41 GGAGCAAGTCCTGGCCTTTGCAGTTGCAAAAACTGGCTGCA GAAGCAAGTCCTGGCCTTTGCAGTTGCAAAAACTGGCTGCA < 41bp 1 0.394031424990474 1 0.459323704242706 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28550197 chr2:28550178 nonsynonymous SNV 0.540 1 2 hm5C_associated_SNPs_31398 0 0 0 0 1 Nucleus 1 0.500231658677606 1 0.999536682644789 hm5C_site_31498 DeepMRMD:1;iRNA_m5C:0.999536682644789 31499 chr19 45797661 45797661 1 + C T PCPG 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG ATGACCCGCAGAAACACCTACGTTTGCACAGAATGCCCGGG < 41bp 1 0.0472861375313378 1 0.0518009960651398 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797661 nonsynonymous SNV 0.796 4 34 hm5C_associated_SNPs_31399 0 0 1 0 2 Nucleus 1 0.500231645732644 1 0.999536708534712 hm5C_site_31499 DeepMRMD:1;iRNA_m5C:0.999536708534712 31500 chr17 71232433 71232433 1 + C T PCPG 71232418 + 71232398 71232438 41 AGGAGTCCCTACTGATGTTACAGTTACTGAGACTCCAGAAA AGGAGTCCCTACTGATGTTACAGTTACTGAGACTCTAGAAA < 41bp 1 0.23179697670529 1 0.0734883844852448 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71232418 chr17:71232433 nonsynonymous SNV 0.010 1 36 hm5C_associated_SNPs_31400 0 0 1 0 0 chromatin 1 0.500231643049273 1 0.999536713901454 hm5C_site_31500 DeepMRMD:1;iRNA_m5C:0.999536713901454 31501 chr17 71232433 71232433 1 + C T PCPG 71232445 + 71232425 71232465 41 TGAGACTCCAGAAAAGAACACAGAATCCCTCATTTTAAGCC TGAGACTCTAGAAAAGAACACAGAATCCCTCATTTTAAGCC < 41bp 1 0.506447109161834 1 0.14512899518013 experiment 0.987105781676332 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71232445 chr17:71232433 nonsynonymous SNV 0.010 1 9 hm5C_associated_SNPs_31401 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157817 hm5C_site_31501 DeepMRMD:1;iRNA_m5C:0.999536712157817 31502 chr10 31812941 31812941 1 + G T PCPG 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA GAATGACTCTGATTCTACACCGCCCAAAAATAAAATGCGGA < 41bp 1 0.232483066822577 1 0.367946684360504 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812941 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_31402 0 0 1 0 1 Nucleus 1 0.500231643934347 1 0.999536712131306 hm5C_site_31502 DeepMRMD:1;iRNA_m5C:0.999536712131306 31503 chr9 130434339 130434339 1 + C T PCPG 130434344 + 130434324 130434364 41 TTACAGACCACCATGCGGGACCTGTCCCAGATGCTGAAGAA TTACAGACCACCATGTGGGACCTGTCCCAGATGCTGAAGAA < 41bp 1 0.0351894758617711 1 0.0587117671966553 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130434344 chr9:130434339 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_31403 0 0 1 0 2 Cytosol 1 0.500231216984039 1 0.999537566031921 hm5C_site_31503 DeepMRMD:1;iRNA_m5C:0.999537566031921 31504 chr14 71570317 71570317 1 + T G PCPG 71570324 + 71570304 71570344 41 AGCCACGAACAGCTTAAAGACATTCTTGGGGGTCCTATCAG AGCCACGAACAGCGTAAAGACATTCTTGGGGGTCCTATCAG < 41bp 1 0.0670648677116523 1 0.130319148302078 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71570324 chr14:71570317 nonsynonymous SNV 0.970 4 14 hm5C_associated_SNPs_31404 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921814 1 0.999536712156372 hm5C_site_31504 DeepMRMD:1;iRNA_m5C:0.999536712156372 31505 chr7 23207596 23207596 1 + G T PCPG 23207600 + 23207580 23207620 41 TGTGGTGGAAGTTTAGGAAACAATGTTTCTGGGAGAGTGCT TGTGGTGGAAGTTTAGTAAACAATGTTTCTGGGAGAGTGCT < 41bp 1 0.419872441070545 1 0.0981455147266388 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23207600 chr7:23207596 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_31405 0 0 1 0 1 cytosol 1 0.500231643920868 1 0.999536712158264 hm5C_site_31505 DeepMRMD:1;iRNA_m5C:0.999536712158264 31506 chr16 816649 816649 1 + T G PCPG 816657 + 816637 816677 41 CCACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCC CCACAAGGCTCCGCGGCGGCCCCTCCCACAGGTGGCCACCC < 41bp 1 0.0218419582506243 1 0.149924904108047 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816657 chr16:816649 synonymous SNV . 0 13 hm5C_associated_SNPs_31406 0 0 0 0 1 nucleus 1 0.500231643933728 1 0.999536712132544 hm5C_site_31506 DeepMRMD:1;iRNA_m5C:0.999536712132544 31507 chr16 816649 816649 1 + T G PCPG 816658 + 816638 816678 41 CACAAGGCTCCTCGGCGGCCCCTCCCACAGGTGGCCACCCT CACAAGGCTCCGCGGCGGCCCCTCCCACAGGTGGCCACCCT < 41bp 1 0.0143158251464094 1 0.0957443714141846 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MSLN ENSG00000102854 CDS Human protein_coding chr16:816658 chr16:816649 synonymous SNV . 0 12 hm5C_associated_SNPs_31407 0 0 0 0 1 nucleus 1 0.500231643921141 1 0.999536712157717 hm5C_site_31507 DeepMRMD:1;iRNA_m5C:0.999536712157717 31508 chr16 67662331 67662331 1 + G A PRAD 67662319 + 67662299 67662339 41 CACCCACACCGGGGAGAAGCCTTACGCCTGCAGCCACTGCG CACCCACACCGGGGAGAAGCCTTACGCCTGCAACCACTGCG < 41bp 1 0.256593069808777 1 0.175270020961761 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CTCF ENSG00000102974 CDS Human protein_coding chr16:67662319 chr16:67662331 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_31408 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31508 DeepMRMD:1;iRNA_m5C:0.999536712157815 31509 chr19 3762707 3762707 1 + C G PRAD 3762687 + 3762667 3762707 41 AACGTGCACTTGCAAGCTGCCCGCAATACGTCATGGCGACC AACGTGCACTTGCAAGCTGCCCGCAATACGTCATGGCGACG < 41bp 1 0.374304912729165 1 0.0783068239688873 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL54 ENSG00000183617 CDS Human protein_coding chr19:3762687 chr19:3762707 synonymous SNV . 0 41 hm5C_associated_SNPs_31409 0 0 1 0 0 Ribosome 1 0.500228210221127 1 0.999543579557746 hm5C_site_31509 DeepMRMD:1;iRNA_m5C:0.999543579557746 31510 chr19 3762707 3762707 1 + C G PRAD 3762698 + 3762678 3762718 41 GCAAGCTGCCCGCAATACGTCATGGCGACCAAACGCCTTTT GCAAGCTGCCCGCAATACGTCATGGCGACGAAACGCCTTTT < 41bp 1 0.630248479102285 1 0.227081120014191 experiment 0.73950304179543 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL54 ENSG00000183617 CDS Human protein_coding chr19:3762698 chr19:3762707 synonymous SNV . 0 30 hm5C_associated_SNPs_31410 0 0 1 0 0 Ribosome 1 0.500231719395918 1 0.999536561208165 hm5C_site_31510 DeepMRMD:1;iRNA_m5C:0.999536561208165 31511 chr7 100775170 100775170 1 + T C PRAD 100775150 + 100775130 100775170 41 CTTCCTGATCATTGATTTTCCCATAGGTATGATCAGCAACT CTTCCTGATCATTGATTTTCCCATAGGTATGATCAGCAACC < 41bp 1 0.265332608440997 1 0.0528745353221893 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100775150 chr7:100775170 synonymous SNV . 0 41 hm5C_associated_SNPs_31411 0 0 1 0 1 Ribosome 1 0.500231647050391 1 0.999536705899219 hm5C_site_31511 DeepMRMD:1;iRNA_m5C:0.999536705899219 31512 chr6 83905528 83905528 1 + A T PRAD 83905517 + 83905497 83905537 41 GACAACAGTGCATCTTATTTCCTGAACAGAAAGCTTGTATA GACAACAGTGCATCTTATTTCCTGAACAGAATGCTTGTATA < 41bp 1 0.507749368906028 1 0.421922236680984 experiment 0.984501262187943 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RWDD2A ENSG00000013392 CDS Human protein_coding chr6:83905517 chr6:83905528 nonsynonymous SNV 0.864 1 32 hm5C_associated_SNPs_31413 0 0 1 0 0 Cytosol 1 0.50020945781025 1 0.999581084379501 hm5C_site_31512 DeepMRMD:1;iRNA_m5C:0.999581084379501 31513 chr1 156202161 156202161 1 + C T PRAD 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGTGATGACACAGCAAATCTATGACAAGTTTATA < 41bp 1 0.103315316238677 1 0.146287709474564 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202161 nonsynonymous SNV 0.890 0 10 hm5C_associated_SNPs_31414 0 0 1 0 2 unknown 1 0.500231643920699 1 0.999536712158603 hm5C_site_31513 DeepMRMD:1;iRNA_m5C:0.999536712158603 31514 chr6 35438057 35438057 1 + C T PRAD 35438048 + 35438028 35438068 41 TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAAC TAAATAAGGCAGGAAAGTTCCCTTCCCTGTTCACACACAAC < 41bp 1 0.0223667427698294 1 0.124905675649643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438048 chr6:35438057 nonsynonymous SNV 0.996 4 30 hm5C_associated_SNPs_31415 0 0 1 0 1 Cytosol 1 0.500231650247175 1 0.999536699505651 hm5C_site_31514 DeepMRMD:1;iRNA_m5C:0.999536699505651 31515 chr8 143781999 143781999 1 + C T PRAD 143782018 + 143781998 143782038 41 ACGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC ATGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC < 41bp 1 0.638139251969822 1 0.0972592234611511 experiment 0.723721496060356 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143782018 chr8:143781999 synonymous SNV . 0 2 hm5C_associated_SNPs_31416 0 0 0 0 1 nucleus 1 0.500231643921186 1 0.999536712157627 hm5C_site_31515 DeepMRMD:1;iRNA_m5C:0.999536712157627 31516 chr8 100182325 100182325 1 + C T PRAD 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACTTGTACCAGTTATTCCCTCTTTCAGC < 41bp 1 0.0859366637208492 1 0.103050649166107 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182325 nonsynonymous SNV 0.999 1 16 hm5C_associated_SNPs_31417 0 0 1 0 2 Nucleus 1 0.500231463838743 1 0.999537072322514 hm5C_site_31516 DeepMRMD:1;iRNA_m5C:0.999537072322514 31517 chr8 92090653 92090653 1 + G A PRAD 92090658 + 92090638 92090678 41 ATTGAAAACTTAACAGGAGCCAGACATATGGAAAGTGAGAA ATTGAAAACTTAACAAGAGCCAGACATATGGAAAGTGAGAA < 41bp 1 0.469634199961024 1 0.346044838428497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92090658 chr8:92090653 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_31418 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_31517 DeepMRMD:1;iRNA_m5C:0.999536712157816 31518 chrX 70516423 70516423 1 + G A PRAD 70516419 + 70516399 70516439 41 TTGTTCTTTCTTCCAGATTTCCTCGTCCTGTGACTGTGGAG TTGTTCTTTCTTCCAGATTTCCTCATCCTGTGACTGTGGAG < 41bp 1 0.164648516487008 1 0.0791921615600586 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516419 chrX:70516423 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_31419 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_31518 DeepMRMD:1;iRNA_m5C:0.999536712157815 31519 chrX 70516423 70516423 1 + G A PRAD 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCATCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT < 41bp 1 0.0974494346329075 1 0.074492335319519 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516423 nonsynonymous SNV 0.997 2 4 hm5C_associated_SNPs_31420 0 0 1 0 2 Nucleus 1 0.500231534077108 1 0.999536931845784 hm5C_site_31519 DeepMRMD:1;iRNA_m5C:0.999536931845784 31520 chr10 43285947 43285947 1 + G A PRAD 43285946 + 43285926 43285966 41 ATTAAAACACAGGTTCTGGACGGAAGTTTACCCGGTACGAA ATTAAAACACAGGTTCTGGACAGAAGTTTACCCGGTACGAA < 41bp 1 0.663381453683204 1 0.383385956287384 experiment 0.673237092633592 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43285946 chr10:43285947 synonymous SNV . 0 22 hm5C_associated_SNPs_31421 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31520 DeepMRMD:1;iRNA_m5C:0.999536712157815 31521 chr19 50302915 50302915 1 + G T PRAD 50302928 + 50302908 50302948 41 GGCAGCGGGCGGCTGACCTCCTCTACGCCATGTGTGACCGG GGCAGCGTGCGGCTGACCTCCTCTACGCCATGTGTGACCGG < 41bp 1 0.630517263215771 1 0.771962881088257 experiment 0.738965473568458 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302928 chr19:50302915 synonymous SNV . 0 8 hm5C_associated_SNPs_31422 0 0 1 0 1 Ribosome 1 0.500231643921011 0.456074237823486 0.999536712157977 hm5C_site_31521 DeepMRMD:0.456074237823486;iRNA_m5C:0.999536712157977 31522 chr4 6695686 6695686 1 + C T PRAD 6695701 + 6695681 6695721 41 ATGGGCATGATCATAGACGTCTTTTCCCGATATTCGGGCAG ATGGGTATGATCATAGACGTCTTTTCCCGATATTCGGGCAG < 41bp 1 0.128833348127774 1 0.0333919525146484 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control S100P ENSG00000163993 CDS Human protein_coding chr4:6695701 chr4:6695686 synonymous SNV . 0 6 hm5C_associated_SNPs_31423 0 0 1 0 0 Ribosome 1 0.500231643921701 1 0.999536712156599 hm5C_site_31522 DeepMRMD:1;iRNA_m5C:0.999536712156599 31523 chr19 14020732 14020732 1 + G A PRAD 14020742 + 14020722 14020762 41 GGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCA GGCTTTGGTCAGGGGCCAGCCCCCAGCCCTGGAGAAGCTCA < 41bp 1 0.405887678479943 1 0.855999708175659 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020742 chr19:14020732 nonsynonymous SNV 0.932 3 11 hm5C_associated_SNPs_31424 0 0 1 0 2 chromatin 1 0.500231643921092 0.288000583648682 0.999536712157815 hm5C_site_31523 DeepMRMD:0.288000583648682;iRNA_m5C:0.999536712157815 31524 chr19 14020732 14020732 1 + G A PRAD 14020743 + 14020723 14020763 41 GCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAA GCTTTGGTCAGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAA < 41bp 1 0.234454097971245 1 0.444519698619843 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020743 chr19:14020732 nonsynonymous SNV 0.932 3 10 hm5C_associated_SNPs_31425 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31524 DeepMRMD:1;iRNA_m5C:0.999536712157815 31525 chr19 14020732 14020732 1 + G A PRAD 14020744 + 14020724 14020764 41 CTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAA CTTTGGTCAGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAA < 41bp 1 0.109725851628507 1 0.480218350887299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020744 chr19:14020732 nonsynonymous SNV 0.932 3 9 hm5C_associated_SNPs_31426 0 0 1 0 2 chromatin 1 0.500231643919603 1 0.999536712160795 hm5C_site_31525 DeepMRMD:1;iRNA_m5C:0.999536712160795 31526 chr19 14020732 14020732 1 + G A PRAD 14020745 + 14020725 14020765 41 TTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAAG TTTGGTCAGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAAG < 41bp 1 0.423987087307192 1 0.535374045372009 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020745 chr19:14020732 nonsynonymous SNV 0.932 3 8 hm5C_associated_SNPs_31427 0 0 1 0 2 chromatin 1 0.500231643921092 0.929251909255982 0.999536712157815 hm5C_site_31526 DeepMRMD:0.929251909255982;iRNA_m5C:0.999536712157815 31527 chr2 109365442 109365442 1 + C T PRAD 109365446 + 109365426 109365466 41 ATTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGCATT ATTGTTGAAACTTTTGTCAACAAAAGCGGGCAGTCTGCATT < 41bp 1 0.411182925407615 1 0.13994699716568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109365446 chr2:109365442 nonsynonymous SNV 0.979 3 17 hm5C_associated_SNPs_31428 0 0 1 0 1 Nucleus 1 0.500232552489566 1 0.999534895020867 hm5C_site_31527 DeepMRMD:1;iRNA_m5C:0.999534895020867 31528 chr17 37883719 37883719 1 + C T PRAD 37883734 + 37883714 37883754 41 TACAGCGGTACAGTGAGGACCCCACAGTACCCCTGCCCTCT TACAGTGGTACAGTGAGGACCCCACAGTACCCCTGCCCTCT < 41bp 1 0.062432951944905 1 0.0969861447811127 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37883734 chr17:37883719 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_31429 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31528 DeepMRMD:1;iRNA_m5C:0.999536712157815 31529 chr10 12148384 12148384 1 + T G PRAD 12148373 + 12148353 12148393 41 TTCAATGGTGCCCAGATCATCTTTGACACATTCATCTCTGG TTCAATGGTGCCCAGATCATCTTTGACACATGCATCTCTGG < 41bp 1 0.145284850215579 1 0.156202733516693 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148373 chr10:12148384 nonsynonymous SNV 0.993 3 32 hm5C_associated_SNPs_31430 0 0 0 0 1 Endoplasmic reticulum 1 0.50023190232127 1 0.999536195357461 hm5C_site_31529 DeepMRMD:1;iRNA_m5C:0.999536195357461 31530 chr1 39908220 39908220 1 + T C PRAD 39908204 + 39908184 39908224 41 AGAGACCAATAAGTGGAGACCCAAAAGTCATTGAAGTTGAG AGAGACCAATAAGTGGAGACCCAAAAGTCATTGAAGCTGAG < 41bp 1 0.0651045539155401 1 0.49465012550354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39908204 chr1:39908220 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_31431 0 0 1 0 1 Endoplasmic reticulum 1 0.500232247615006 1 0.999535504769987 hm5C_site_31530 DeepMRMD:1;iRNA_m5C:0.999535504769987 31531 chr15 64418402 64418402 1 + C T PRAD 64418395 + 64418375 64418415 41 AGAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTC AGAATGGCTTCATTGTCCCTCCGCCCCTGGAGAAGAGCCTC < 41bp 1 0.0997540408563657 1 0.327610433101654 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418395 chr15:64418402 nonsynonymous SNV 0.966 4 28 hm5C_associated_SNPs_31432 0 0 1 0 1 Ribosome 1 0.500231643920839 1 0.999536712158322 hm5C_site_31531 DeepMRMD:1;iRNA_m5C:0.999536712158322 31532 chr15 64418402 64418402 1 + C T PRAD 64418396 + 64418376 64418416 41 GAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCA GAATGGCTTCATTGTCCCTCCGCCCCTGGAGAAGAGCCTCA < 41bp 1 0.246215417211709 1 0.316763877868652 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418396 chr15:64418402 nonsynonymous SNV 0.966 4 27 hm5C_associated_SNPs_31433 0 0 1 0 1 Ribosome 1 0.500231643924499 1 0.999536712151002 hm5C_site_31532 DeepMRMD:1;iRNA_m5C:0.999536712151002 31533 chr15 64418402 64418402 1 + C T PRAD 64418398 + 64418378 64418418 41 ATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCATA ATGGCTTCATTGTCCCTCCGCCCCTGGAGAAGAGCCTCATA < 41bp 1 0.169949626055326 1 0.0607319176197052 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418398 chr15:64418402 nonsynonymous SNV 0.966 4 25 hm5C_associated_SNPs_31434 0 0 1 0 1 Ribosome 1 0.500231643921097 1 0.999536712157805 hm5C_site_31533 DeepMRMD:1;iRNA_m5C:0.999536712157805 31534 chr1 156105740 156105740 1 + C T PRAD 156105721 + 156105701 156105741 41 AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCCG AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCTG < 41bp 1 0.398462753788153 1 0.367861360311508 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105721 chr1:156105740 nonsynonymous SNV 0.999 5 40 hm5C_associated_SNPs_31436 0 0 1 0 1 Cytosol 1 0.500231643920823 1 0.999536712158354 hm5C_site_31534 DeepMRMD:1;iRNA_m5C:0.999536712158354 31535 chr1 156105740 156105740 1 + C T PRAD 156105730 + 156105710 156105750 41 AAGCTTCGAGACCTGGAGGACTCACTGGCCCGTGAGCGGGA AAGCTTCGAGACCTGGAGGACTCACTGGCCTGTGAGCGGGA < 41bp 1 0.247070241668215 1 0.194838762283325 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105730 chr1:156105740 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_31437 0 0 1 0 1 Cytosol 1 0.500231643921015 1 0.99953671215797 hm5C_site_31535 DeepMRMD:1;iRNA_m5C:0.99953671215797 31536 chr17 66526538 66526538 1 + T G PRAD 66526558 + 66526538 66526578 41 TCCTCAAACGAAACATCCAGCAGTACAACAGTTTTGTGTCA GCCTCAAACGAAACATCCAGCAGTACAACAGTTTTGTGTCA < 41bp 1 0.523784484563477 1 0.913977265357971 experiment 0.952431030873047 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66526558 chr17:66526538 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_31438 0 0 1 0 0 Ribosome 1 0.500231643609692 0.172045469284058 0.999536712780616 hm5C_site_31536 DeepMRMD:0.172045469284058;iRNA_m5C:0.999536712780616 31537 chr1 158063224 158063224 1 + C A PRAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACCGGAGCCGCAAAGGCAGTGAG < 41bp 1 0.591268244655971 1 0.471996814012527 experiment 0.817463510688059 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063224 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_31440 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31537 DeepMRMD:1;iRNA_m5C:0.999536712157815 31538 chr2 99985894 99985894 1 + T C PRAD 99985879 + 99985859 99985899 41 TGAATCAATGGAATTATGTGCTGCTGTAGAAGTTATGGAAC TGAATCAATGGAATTATGTGCTGCTGTAGAAGTTACGGAAC < 41bp 1 0.505761028209032 1 0.413167238235474 experiment 0.988477943581936 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99985879 chr2:99985894 nonsynonymous SNV 0.052 0 36 hm5C_associated_SNPs_31441 0 0 1 0 0 Ribosome 1 0.500231642450728 1 0.999536715098544 hm5C_site_31538 DeepMRMD:1;iRNA_m5C:0.999536715098544 31539 chr2 99985894 99985894 1 + T C PRAD 99985882 + 99985862 99985902 41 ATCAATGGAATTATGTGCTGCTGTAGAAGTTATGGAACAAG ATCAATGGAATTATGTGCTGCTGTAGAAGTTACGGAACAAG < 41bp 1 0.329924522152406 1 0.371793270111084 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99985882 chr2:99985894 nonsynonymous SNV 0.052 0 33 hm5C_associated_SNPs_31442 0 0 1 0 0 Ribosome 1 0.500231643952907 1 0.999536712094186 hm5C_site_31539 DeepMRMD:1;iRNA_m5C:0.999536712094186 31540 chr2 99985894 99985894 1 + T C PRAD 99985899 + 99985879 99985919 41 CTGCTGTAGAAGTTATGGAACAAGGAGTACCAGAAAAGGAA CTGCTGTAGAAGTTACGGAACAAGGAGTACCAGAAAAGGAA < 41bp 1 0.630222141439455 1 0.587698996067047 experiment 0.73955571712109 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99985899 chr2:99985894 nonsynonymous SNV 0.052 0 16 hm5C_associated_SNPs_31443 0 0 1 0 0 Ribosome 1 0.500231643921092 0.824602007865906 0.999536712157815 hm5C_site_31540 DeepMRMD:0.824602007865906;iRNA_m5C:0.999536712157815 31541 chr2 99985894 99985894 1 + T C PRAD 99985908 + 99985888 99985928 41 AAGTTATGGAACAAGGAGTACCAGAAAAGGAAGAGACACCA AAGTTACGGAACAAGGAGTACCAGAAAAGGAAGAGACACCA < 41bp 1 0.571858730666749 1 0.346110045909882 experiment 0.856282538666502 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99985908 chr2:99985894 nonsynonymous SNV 0.052 0 7 hm5C_associated_SNPs_31444 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31541 DeepMRMD:1;iRNA_m5C:0.999536712157815 31542 chr19 33077770 33077770 1 + G C PRAD 33077768 + 33077748 33077788 41 TTTCTGGTTCTCCTAGGTATCAGAACAAGGTTTAATAGAAA TTTCTGGTTCTCCTAGGTATCACAACAAGGTTTAATAGAAA < 41bp 1 0.571325979159937 1 0.595406532287598 experiment 0.857348041680126 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD5 ENSG00000105185 CDS Human protein_coding chr19:33077768 chr19:33077770 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_31445 0 0 1 0 2 Ribosome 1 0.500221385226482 0.809186935424804 0.999557229547036 hm5C_site_31542 DeepMRMD:0.809186935424804;iRNA_m5C:0.999557229547036 31543 chr16 90028248 90028248 1 + C G PRAD 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACAGAA < 41bp 1 0.389751157653576 1 0.246823191642761 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028248 nonsynonymous SNV 0.928 4 39 hm5C_associated_SNPs_31446 0 0 1 0 1 Ribosome 1 0.500231431767414 1 0.999537136465172 hm5C_site_31543 DeepMRMD:1;iRNA_m5C:0.999537136465172 31544 chr16 90028248 90028248 1 + C G PRAD 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACAGAAC < 41bp 1 0.106385182802891 1 0.343831151723862 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028248 nonsynonymous SNV 0.928 4 38 hm5C_associated_SNPs_31447 0 0 1 0 1 Ribosome 1 0.50023163593845 1 0.999536728123101 hm5C_site_31544 DeepMRMD:1;iRNA_m5C:0.999536728123101 31545 chr2 220502444 220502444 1 + G A PRAD 220502432 + 220502412 220502452 41 GCCCCCCCAGCCCGAGGAACCAGCCCAATACGGCACTGCTC GCCCCCCCAGCCCGAGGAACCAGCCCAATACGACACTGCTC < 41bp 1 0.383040501830343 1 0.7201868891716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220502432 chr2:220502444 nonsynonymous SNV 0.329 4 33 hm5C_associated_SNPs_31448 0 0 0 0 0 Cytosol 1 0.500231650327123 0.5596262216568 0.999536699345754 hm5C_site_31545 DeepMRMD:0.5596262216568;iRNA_m5C:0.999536699345754 31546 chr9 106858474 106858474 1 + G C PRAD 106858485 + 106858465 106858505 41 AATGGGCAGGCTGGTATTACCAAAGCCTCTGTGTCAATCAC AATGGGCAGCCTGGTATTACCAAAGCCTCTGTGTCAATCAC < 41bp 1 0.549986167101129 1 0.495968282222748 experiment 0.900027665797742 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106858485 chr9:106858474 nonsynonymous SNV 0.994 4 10 hm5C_associated_SNPs_31449 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31546 DeepMRMD:1;iRNA_m5C:0.999536712157815 31547 chr6 88374517 88374517 1 + C T PRAD 88374522 + 88374502 88374542 41 CGCCCCAGACATCTGCATAGCATACAAACTGCACCTAGAGT CGCCCCAGACATCTGTATAGCATACAAACTGCACCTAGAGT < 41bp 1 0.104333963435798 1 0.0897960066795349 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ORC3 ENSG00000135336 CDS Human protein_coding chr6:88374522 chr6:88374517 synonymous SNV . 0 16 hm5C_associated_SNPs_31450 0 0 1 0 2 Cytosol 1 0.500231644756556 1 0.999536710486888 hm5C_site_31547 DeepMRMD:1;iRNA_m5C:0.999536710486888 31548 chr17 3629159 3629159 1 + C T PRAD 3629168 + 3629148 3629188 41 AGGCATCACTGCGCTTTGAGCACCGAGACTTACACTGGGGG AGGCATCACTGTGCTTTGAGCACCGAGACTTACACTGGGGG < 41bp 1 0.407815063593318 1 0.241583406925201 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HASPIN ENSG00000177602 CDS Human protein_coding chr17:3629168 chr17:3629159 nonsynonymous SNV 0.990 0 12 hm5C_associated_SNPs_31451 0 0 0 0 0 unknown 1 0.500231632443336 1 0.999536735113328 hm5C_site_31548 DeepMRMD:1;iRNA_m5C:0.999536735113328 31549 chr2 235943706 235943706 1 + G T PRAD 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGATGGGACC < 41bp 1 0.242956245674351 1 0.26824888586998 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943706 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_31452 0 0 1 0 1 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_31549 DeepMRMD:1;iRNA_m5C:0.999536712157815 31550 chr8 22862091 22862091 1 + G A PRAD 22862102 + 22862082 22862122 41 GCTGGCCACGCATGTGCCCACAGTATGGGCCATCGACCAAT GCTGGCCACACATGTGCCCACAGTATGGGCCATCGACCAAT < 41bp 1 0.630800070284942 1 0.113513350486755 experiment 0.738399859430116 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862102 chr8:22862091 synonymous SNV . 0 10 hm5C_associated_SNPs_31454 0 0 0 0 1 cytosol 1 0.500231461344482 1 0.999537077311036 hm5C_site_31550 DeepMRMD:1;iRNA_m5C:0.999537077311036 31551 chr4 26407825 26407825 1 + C T PRAD 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGTGAGGGGATCAAACAGTACTTATTCTTCAT < 41bp 1 0.285270918737115 1 0.277459323406219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407825 stopgain 1.000 1 12 hm5C_associated_SNPs_31455 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921162 1 0.999536712157675 hm5C_site_31551 DeepMRMD:1;iRNA_m5C:0.999536712157675 31552 chr15 75632054 75632054 1 + G A PRAD 75632036 + 75632016 75632056 41 CTGAGAGCCACCCACCCCATCTCACAGTGAATAGGTTGGCA CTGAGAGCCACCCACCCCATCTCACAGTGAATAGGTTGACA < 41bp 1 0.281601006057122 1 0.0516687631607056 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control COMMD4 ENSG00000140365 CDS Human protein_coding chr15:75632036 chr15:75632054 nonsynonymous SNV 0.858 0 39 hm5C_associated_SNPs_31456 0 0 1 0 1 Ribosome 1 0.500231643921101 1 0.999536712157799 hm5C_site_31552 DeepMRMD:1;iRNA_m5C:0.999536712157799 31553 chr5 140731333 140731333 1 + C T PRAD 140731316 + 140731296 140731336 41 GTGACCTGGAGCCGCGGGAGCTGTTGTCCTACGTGTCCGTG GTGACCTGGAGCCGCGGGAGCTGTTGTCCTACGTGTCTGTG < 41bp 1 0.19664697622204 1 0.0633384585380554 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHGB1 ENSG00000254221 CDS Human protein_coding chr5:140731316 chr5:140731333 synonymous SNV . 0 38 hm5C_associated_SNPs_31457 0 0 1 0 0 exosome 1 0.500228225009959 1 0.999543549980082 hm5C_site_31553 DeepMRMD:1;iRNA_m5C:0.999543549980082 31554 chr12 27835613 27835613 1 + C T PRAD 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATGGTTGAATGCTACATTACATGACTGTTGTAAGT < 41bp 1 0.1843638037539 1 0.182738810777664 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835613 stopgain 0.980 0 12 hm5C_associated_SNPs_31458 0 0 0 0 2 Nucleus 1 0.500231643921091 1 0.999536712157817 hm5C_site_31554 DeepMRMD:1;iRNA_m5C:0.999536712157817 31555 chr11 73020418 73020418 1 + T C PRAD 73020409 + 73020389 73020429 41 ATCGCCGCCTCCTATCCTGTCAGCCGCAGTCGTGCTGCCAG ATCGCCGCCTCCTATCCTGTCAGCCGCAGCCGTGCTGCCAG < 41bp 1 0.398391629819538 1 0.71391099691391 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73020409 chr11:73020418 synonymous SNV . 0 30 hm5C_associated_SNPs_31459 0 0 1 0 0 Cytosol 1 0.500231643921092 0.57217800617218 0.999536712157815 hm5C_site_31555 DeepMRMD:0.57217800617218;iRNA_m5C:0.999536712157815 31556 chr19 11474850 11474850 1 + G A PRAD 11474841 + 11474821 11474861 41 TGTCTCTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATT TGTCTCTTTGTCTCAGGAACCCGAGGTCTACAGGCCGCATT < 41bp 1 0.507849844448195 1 0.910743653774261 experiment 0.98430031110361 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474841 chr19:11474850 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_31460 0 0 1 0 2 exosome 1 0.500231641507035 0.178512692451478 0.999536716985931 hm5C_site_31556 DeepMRMD:0.178512692451478;iRNA_m5C:0.999536716985931 31557 chr11 126215288 126215288 1 + T C PRAD 126215278 + 126215258 126215298 41 GCTACCGGATGAAGGGAGACCATCTGCGAGTATACCTGCAC GCTACCGGATGAAGGGAGACCATCTGCGAGCATACCTGCAC < 41bp 1 0.325130440464353 1 0.136977940797806 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126215278 chr11:126215288 nonsynonymous SNV 0.524 2 31 hm5C_associated_SNPs_31461 0 0 1 0 1 Ribosome 1 0.500236575390278 1 0.999526849219444 hm5C_site_31557 DeepMRMD:1;iRNA_m5C:0.999526849219444 31558 chr3 126707689 126707689 1 + G A PRAD 126707684 + 126707664 126707704 41 GAACCTGACACTGCTGCGGGCCCACGTCACGGGCCCTGTGG GAACCTGACACTGCTGCGGGCCCACATCACGGGCCCTGTGG < 41bp 1 0.0276743536770063 1 0.0601066648960114 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707684 chr3:126707689 nonsynonymous SNV 0.332 0 26 hm5C_associated_SNPs_31462 0 0 1 0 0 Ribosome 1 0.50023217939335 1 0.9995356412133 hm5C_site_31558 DeepMRMD:1;iRNA_m5C:0.9995356412133 31559 chr3 126707689 126707689 1 + G A PRAD 126707685 + 126707665 126707705 41 AACCTGACACTGCTGCGGGCCCACGTCACGGGCCCTGTGGA AACCTGACACTGCTGCGGGCCCACATCACGGGCCCTGTGGA < 41bp 1 0.0833872825450854 1 0.259975016117096 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707685 chr3:126707689 nonsynonymous SNV 0.332 0 25 hm5C_associated_SNPs_31463 0 0 1 0 0 Ribosome 1 0.500231576516513 1 0.999536846966975 hm5C_site_31559 DeepMRMD:1;iRNA_m5C:0.999536846966975 31560 chr3 126707689 126707689 1 + G A PRAD 126707686 + 126707666 126707706 41 ACCTGACACTGCTGCGGGCCCACGTCACGGGCCCTGTGGAG ACCTGACACTGCTGCGGGCCCACATCACGGGCCCTGTGGAG < 41bp 1 0.227698955814901 1 0.285495340824127 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707686 chr3:126707689 nonsynonymous SNV 0.332 0 24 hm5C_associated_SNPs_31464 0 0 1 0 0 Ribosome 1 0.500231595520132 1 0.999536808959737 hm5C_site_31560 DeepMRMD:1;iRNA_m5C:0.999536808959737 31561 chr3 126707689 126707689 1 + G A PRAD 126707697 + 126707677 126707717 41 CTGCGGGCCCACGTCACGGGCCCTGTGGAGGACAACGAGAA CTGCGGGCCCACATCACGGGCCCTGTGGAGGACAACGAGAA < 41bp 1 0.0335350096556804 1 0.0520580410957336 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707697 chr3:126707689 nonsynonymous SNV 0.332 0 13 hm5C_associated_SNPs_31465 0 0 1 0 0 Ribosome 1 0.500231643930145 1 0.999536712139709 hm5C_site_31561 DeepMRMD:1;iRNA_m5C:0.999536712139709 31562 chr3 126707689 126707689 1 + G A PRAD 126707698 + 126707678 126707718 41 TGCGGGCCCACGTCACGGGCCCTGTGGAGGACAACGAGAAG TGCGGGCCCACATCACGGGCCCTGTGGAGGACAACGAGAAG < 41bp 1 0.0212023722296385 1 0.0579433441162109 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707698 chr3:126707689 nonsynonymous SNV 0.332 0 12 hm5C_associated_SNPs_31466 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31562 DeepMRMD:1;iRNA_m5C:0.999536712157815 31563 chr3 126707689 126707689 1 + G A PRAD 126707699 + 126707679 126707719 41 GCGGGCCCACGTCACGGGCCCTGTGGAGGACAACGAGAAGT GCGGGCCCACATCACGGGCCCTGTGGAGGACAACGAGAAGT < 41bp 1 0.146710175932391 1 0.0729689598083496 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707699 chr3:126707689 nonsynonymous SNV 0.332 0 11 hm5C_associated_SNPs_31467 0 0 1 0 0 Ribosome 1 0.500231643737071 1 0.999536712525857 hm5C_site_31563 DeepMRMD:1;iRNA_m5C:0.999536712525857 31564 chr5 110439987 110439987 1 + C T PRAD 110439992 + 110439972 110440012 41 ACTCTACAGCAATTGCCGGACTGACATTTCTCCATAGAGAG ACTCTACAGCAATTGTCGGACTGACATTTCTCCATAGAGAG < 41bp 1 0.312018632970274 1 0.109237343072891 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR36 ENSG00000134987 CDS Human protein_coding chr5:110439992 chr5:110439987 nonsynonymous SNV 0.992 2 16 hm5C_associated_SNPs_31468 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_31564 DeepMRMD:1;iRNA_m5C:0.999536712157815 31565 chr15 41247791 41247791 1 + C T PRAD 41247789 + 41247769 41247809 41 GCGCCTGAAGAGGCCATTGCCACGCAGATCCTGGCCTGCCG GCGCCTGAAGAGGCCATTGCCATGCAGATCCTGGCCTGCCG < 41bp 1 0.564782184335614 1 0.710103869438171 experiment 0.870435631328772 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHAC1 ENSG00000128965 CDS Human protein_coding chr15:41247789 chr15:41247791 nonsynonymous SNV 0.266 0 23 hm5C_associated_SNPs_31469 0 0 1 0 1 nucleoplasm 1 0.500231643910378 0.579792261123658 0.999536712179245 hm5C_site_31565 DeepMRMD:0.579792261123658;iRNA_m5C:0.999536712179245 31566 chr19 14574936 14574936 1 + C T PRAD 14574942 + 14574922 14574962 41 CTCAGAAGAGCTCGCGGGATCCTCCTTCCAGCCCATCGAGC CTCAGAAGAGCTCGTGGGATCCTCCTTCCAGCCCATCGAGC < 41bp 1 0.0577797421268617 1 0.127759516239166 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14574942 chr19:14574936 nonsynonymous SNV 0.001 1 15 hm5C_associated_SNPs_31470 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31566 DeepMRMD:1;iRNA_m5C:0.999536712157815 31567 chr19 804675 804675 1 + C T PRAD 804666 + 804646 804686 41 CTCAGGATCATCGTGGAGAACCTCTTCTACCCTGTGACCCT CTCAGGATCATCGTGGAGAACCTCTTCTATCCTGTGACCCT < 41bp 1 0.0812656851421877 1 0.014631062746048 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804666 chr19:804675 synonymous SNV . 0 30 hm5C_associated_SNPs_31471 0 0 1 0 1 Cytosol 1 0.500231643922304 1 0.999536712155391 hm5C_site_31567 DeepMRMD:1;iRNA_m5C:0.999536712155391 31568 chr19 804675 804675 1 + C T PRAD 804667 + 804647 804687 41 TCAGGATCATCGTGGAGAACCTCTTCTACCCTGTGACCCTG TCAGGATCATCGTGGAGAACCTCTTCTATCCTGTGACCCTG < 41bp 1 0.343009413890626 1 0.0264317989349365 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804667 chr19:804675 synonymous SNV . 0 29 hm5C_associated_SNPs_31472 0 0 1 0 1 Cytosol 1 0.500231643416449 1 0.999536713167102 hm5C_site_31568 DeepMRMD:1;iRNA_m5C:0.999536713167102 31569 chr19 804675 804675 1 + C T PRAD 804672 + 804652 804692 41 ATCATCGTGGAGAACCTCTTCTACCCTGTGACCCTGGATGT ATCATCGTGGAGAACCTCTTCTATCCTGTGACCCTGGATGT < 41bp 1 0.183088590457752 1 0.283838599920273 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804672 chr19:804675 synonymous SNV . 0 24 hm5C_associated_SNPs_31473 0 0 1 0 1 Cytosol 1 0.500231643921269 1 0.999536712157462 hm5C_site_31569 DeepMRMD:1;iRNA_m5C:0.999536712157462 31570 chr17 55191836 55191836 1 + G A PRAD 55191830 + 55191810 55191850 41 CCCTCTACAGCTCATGCTGCCTGATGGCATCACCGTGGAGG CCCTCTACAGCTCATGCTGCCTGATGACATCACCGTGGAGG < 41bp 1 0.251812521573427 1 0.12207892537117 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191830 chr17:55191836 nonsynonymous SNV 0.997 3 27 hm5C_associated_SNPs_31474 0 0 1 1 1 Endoplasmic reticulum 1 0.500231644916604 1 0.999536710166791 hm5C_site_31570 DeepMRMD:1;iRNA_m5C:0.999536710166791 31571 chr19 1461079 1461079 1 + T C PRAD 1461096 + 1461076 1461116 41 ACATCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG ACACCAACAGCAAGAAGGTGCTGAGGGAGGCGGGCAGCGTG < 41bp 1 0.249531748652152 1 0.413513839244843 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC2 ENSG00000115266 CDS Human protein_coding chr19:1461096 chr19:1461079 nonsynonymous SNV 0.994 3 4 hm5C_associated_SNPs_31475 0 0 0 0 2 nucleolus 1 0.500231609019476 1 0.999536781961049 hm5C_site_31571 DeepMRMD:1;iRNA_m5C:0.999536781961049 31572 chr2 190531702 190531702 1 + G A PRAD 190531711 + 190531691 190531731 41 ACATGAAGGAAGTAATTCAGCAGTTCATTGATGTCCTGAGT ACATGAAGGAAATAATTCAGCAGTTCATTGATGTCCTGAGT < 41bp 1 0.347452522916714 1 0.302768111228943 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ASNSD1 ENSG00000138381 CDS Human protein_coding chr2:190531711 chr2:190531702 nonsynonymous SNV 0.332 0 12 hm5C_associated_SNPs_31476 0 0 1 0 0 chromatin 1 0.500231642901558 1 0.999536714196885 hm5C_site_31572 DeepMRMD:1;iRNA_m5C:0.999536714196885 31573 chr5 68692341 68692341 1 + C T PRAD 68692324 + 68692304 68692344 41 TCATTGCCAAGGAGGAGGATCAAGTTTTCGACCCTTGCACA TCATTGCCAAGGAGGAGGATCAAGTTTTCGACCCTTGTACA < 41bp 1 0.63250647760514 1 0.469163239002228 experiment 0.734987044789719 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD17 ENSG00000152942 CDS Human protein_coding chr5:68692324 chr5:68692341 nonsynonymous SNV 0.994 2 38 hm5C_associated_SNPs_31477 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31573 DeepMRMD:1;iRNA_m5C:0.999536712157815 31574 chr19 4323367 4323367 1 + C T PRAD 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCTCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG < 41bp 1 0.336753645844512 1 0.199519485235214 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323367 nonsynonymous SNV 0.992 0 5 hm5C_associated_SNPs_31478 0 0 1 0 2 cytosol 1 0.50023384035367 1 0.999532319292659 hm5C_site_31574 DeepMRMD:1;iRNA_m5C:0.999532319292659 31575 chr2 128944261 128944261 1 + T C PRAD 128944260 + 128944240 128944280 41 TTTTTTTAACCAAACAGGATCTGCCCAATAACATGATTCAT TTTTTTTAACCAAACAGGATCCGCCCAATAACATGATTCAT < 41bp 1 0.0159558962490533 1 0.128964871168137 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128944260 chr2:128944261 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_31479 0 0 1 0 1 Nucleus 1 0.500231645801509 1 0.999536708396983 hm5C_site_31575 DeepMRMD:1;iRNA_m5C:0.999536708396983 31576 chr2 105959571 105959571 1 + C T PRAD 105959573 + 105959553 105959593 41 AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGGC AACAGAACCATGACTTAATGCATAGGAAAAGTCCTTCAGGC < 41bp 1 0.474755963446343 1 0.544778823852539 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105959573 chr2:105959571 nonsynonymous SNV 0.987 0 19 hm5C_associated_SNPs_31480 0 0 1 0 1 Ribosome 1 0.500231706275501 0.910442352294922 0.999536587448997 hm5C_site_31576 DeepMRMD:0.910442352294922;iRNA_m5C:0.999536587448997 31577 chr12 22208195 22208195 1 + G A PRAD 22208197 + 22208177 22208217 41 AGCTCTACCTCACTAGATGCCATCATAGAATTTCTTAATTA AGCTCTACCTCACTAGATACCATCATAGAATTTCTTAATTA < 41bp 1 0.543947369854039 1 0.0714987814426422 experiment 0.912105260291923 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208197 chr12:22208195 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_31481 0 0 1 2 1 Ribosome 1 0.500231643265987 1 0.999536713468025 hm5C_site_31577 DeepMRMD:1;iRNA_m5C:0.999536713468025 31578 chr1 162469789 162469789 1 + C T PRAD 162469797 + 162469777 162469817 41 TCTCCAAATGTGCCATCACGCTGTCTGTTGCTTGAACTCCT TCTCCAAATGTGTCATCACGCTGTCTGTTGCTTGAACTCCT < 41bp 1 0.306573419612141 1 0.259838879108429 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162469797 chr1:162469789 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_31483 0 0 1 0 1 chromatin 1 0.500231636439889 1 0.999536727120222 hm5C_site_31578 DeepMRMD:1;iRNA_m5C:0.999536727120222 31579 chr1 57161695 57161695 1 + G A PRAD 57161696 + 57161676 57161716 41 CCCTCCCATTTGATGATGAGCATGTACCTACGTTATTTAAG CCCTCCCATTTGATGATGAACATGTACCTACGTTATTTAAG < 41bp 1 0.18615265765656 1 0.0252859890460968 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57161696 chr1:57161695 synonymous SNV . 0 20 hm5C_associated_SNPs_31484 0 0 1 0 1 Endoplasmic reticulum 1 0.500225794330599 1 0.999548411338801 hm5C_site_31579 DeepMRMD:1;iRNA_m5C:0.999548411338801 31580 chr17 79663968 79663968 1 + T C PRAD 79663977 + 79663957 79663997 41 TGCACGGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGC TGCACGGCGTGCACATGAGCCAGCCGGCCCCTGCCGCTGGC < 41bp 1 0.59832556616188 1 0.683139264583588 experiment 0.80334886767624 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663977 chr17:79663968 nonsynonymous SNV 0.390 0 12 hm5C_associated_SNPs_31485 0 0 1 0 1 Nucleus 1 0.500231644191743 0.633721470832824 0.999536711616514 hm5C_site_31580 DeepMRMD:0.633721470832824;iRNA_m5C:0.999536711616514 31581 chr17 79663968 79663968 1 + T C PRAD 79663980 + 79663960 79664000 41 ACGGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGCCCC ACGGCGTGCACATGAGCCAGCCGGCCCCTGCCGCTGGCCCC < 41bp 1 0.365175492201995 1 0.512460350990295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663980 chr17:79663968 nonsynonymous SNV 0.390 0 9 hm5C_associated_SNPs_31486 0 0 1 0 1 Nucleus 1 0.500231643914511 0.97507929801941 0.999536712170978 hm5C_site_31581 DeepMRMD:0.97507929801941;iRNA_m5C:0.999536712170978 31582 chr19 10225358 10225358 1 + A G PRAD 10225362 + 10225342 10225382 41 CCAAGCCCTGCCCCTCAATGCCACAGCCGCCCCTAAACCGT CCAAGCCCTGCCCCTCGATGCCACAGCCGCCCCTAAACCGT < 41bp 1 0.526078556501062 1 0.198327869176865 experiment 0.947842886997877 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control P2RY11;PPAN-P2RY11 ENSG00000130810;ENSG00000243207;ENSG00000244165 CDS Human other chr19:10225362 chr19:10225358 nonsynonymous SNV 0.001 1 17 hm5C_associated_SNPs_31487 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31582 DeepMRMD:1;iRNA_m5C:0.999536712157815 31583 chr22 38352843 38352843 1 + C T PRAD 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGAGAATGCTGAAGAGGT < 41bp 1 0.518857939286946 1 0.2125124335289 experiment 0.962284121426108 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352843 synonymous SNV . 0 33 hm5C_associated_SNPs_31490 0 0 1 0 3 Ribosome 1 0.500231642907906 1 0.999536714184189 hm5C_site_31583 DeepMRMD:1;iRNA_m5C:0.999536714184189 31584 chr1 16262309 16262309 1 + C T PRAD 16262304 + 16262284 16262324 41 GTACCGACTGCACCCCTATACTGTGCCACGGGATGTGAGGA GTACCGACTGCACCCCTATACTGTGTCACGGGATGTGAGGA < 41bp 1 0.230041851603901 1 0.196738600730896 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16262304 chr1:16262309 nonsynonymous SNV 0.910 1 26 hm5C_associated_SNPs_31491 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_31584 DeepMRMD:1;iRNA_m5C:0.999536712157814 31585 chr7 4825902 4825902 1 + C T PRAD 4825887 + 4825867 4825907 41 CCCTGGTCTTGCAGGGGAAGCGGCTGCAGTGGACTCGGAAG CCCTGGTCTTGCAGGGGAAGCGGCTGCAGTGGACTTGGAAG < 41bp 1 0.369580669764437 1 0.563921928405762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4825887 chr7:4825902 nonsynonymous SNV 0.425 0 36 hm5C_associated_SNPs_31492 0 0 1 0 1 chromatin 1 0.500231643921092 0.872156143188476 0.999536712157815 hm5C_site_31585 DeepMRMD:0.872156143188476;iRNA_m5C:0.999536712157815 31586 chr19 10789860 10789860 1 + C T PRAD 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTCGCGTGCCCACCTGGGGTCCCCTCTGAGGCTGGGTAAGG < 41bp 1 0.11031013183484 1 0.0358666479587555 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789860 stopgain 0.989 1 27 hm5C_associated_SNPs_31493 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31586 DeepMRMD:1;iRNA_m5C:0.999536712157815 31587 chr19 10789860 10789860 1 + C T PRAD 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TCGCGTGCCCACCTGGGGTCCCCTCTGAGGCTGGGTAAGGC < 41bp 1 0.0497304182972 1 0.0746383666992188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789860 stopgain 0.989 1 26 hm5C_associated_SNPs_31494 0 0 1 0 2 Cytosol 1 0.500231643921429 1 0.999536712157142 hm5C_site_31587 DeepMRMD:1;iRNA_m5C:0.999536712157142 31588 chr6 29797302 29797302 1 + C T PRAD 29797286 + 29797266 29797306 41 GGCTTCTACCCTGCGGAGATCATACTGACCTGGCAGCGGGA GGCTTCTACCCTGCGGAGATCATACTGACCTGGCAGTGGGA < 41bp 1 0.131955658347277 1 0.0994860231876373 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HLA-G ENSG00000204632 CDS Human protein_coding chr6:29797286 chr6:29797302 nonsynonymous SNV 0.001 3 37 hm5C_associated_SNPs_31495 0 0 0 0 0 exosome 1 0.500231643921073 1 0.999536712157853 hm5C_site_31588 DeepMRMD:1;iRNA_m5C:0.999536712157853 31589 chr16 78143685 78143685 1 + C T PRAD 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATATGGATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.406750975016885 1 0.405589878559113 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143685 nonsynonymous SNV 0.937 0 11 hm5C_associated_SNPs_31496 0 0 1 0 2 Ribosome 1 0.500231643928816 1 0.999536712142368 hm5C_site_31589 DeepMRMD:1;iRNA_m5C:0.999536712142368 31590 chr19 39979204 39979204 1 + C T PRAD 39979223 + 39979203 39979243 41 ACGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC ATGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC < 41bp 1 0.452420427537754 1 0.0740809142589569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39979223 chr19:39979204 synonymous SNV . 0 2 hm5C_associated_SNPs_31497 0 0 1 0 2 Ribosome 1 0.500231643942002 1 0.999536712115995 hm5C_site_31590 DeepMRMD:1;iRNA_m5C:0.999536712115995 31591 chr19 42848911 42848911 1 + G A PRAD 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCGTCACGTCCCTGGAGGCCTGCATCACCCAGAGCTTCCT < 41bp 1 0.442018912071312 1 0.48008930683136 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848911 nonsynonymous SNV 0.808 0 25 hm5C_associated_SNPs_31498 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644053725 1 0.999536711892551 hm5C_site_31591 DeepMRMD:1;iRNA_m5C:0.999536711892551 31592 chr10 118313343 118313343 1 + C T PRAD 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACCATTGGACGTATCACAGGTT < 41bp 1 0.105184345755409 1 0.100712180137634 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313343 synonymous SNV . 0 31 hm5C_associated_SNPs_31499 0 0 0 0 1 unknown 1 0.500230124792042 1 0.999539750415916 hm5C_site_31592 DeepMRMD:1;iRNA_m5C:0.999539750415916 31593 chr10 118313343 118313343 1 + C T PRAD 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACCATTGGACGTATCACAGGTTG < 41bp 1 0.426053198193853 1 0.208462357521057 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313343 synonymous SNV . 0 30 hm5C_associated_SNPs_31500 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31593 DeepMRMD:1;iRNA_m5C:0.999536712157815 31594 chr2 75107502 75107502 1 + T C PRAD 75107484 + 75107464 75107504 41 GGATGGCAGTGGCAAAGGTGCAGCCATGGTGACAGCAGTGG GGATGGCAGTGGCAAAGGTGCAGCCATGGTGACAGCAGCGG < 41bp 1 0.418674829199579 1 0.123747497797012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HK2 ENSG00000159399 CDS Human protein_coding chr2:75107484 chr2:75107502 nonsynonymous SNV 0.996 5 39 hm5C_associated_SNPs_31502 0 0 0 0 0 Nucleus 1 0.500231507859872 1 0.999536984280256 hm5C_site_31594 DeepMRMD:1;iRNA_m5C:0.999536984280256 31595 chr19 36594100 36594100 1 + C T PRAD 36594096 + 36594076 36594116 41 GCTGAAGAGACCCTGGAGGCCTGGCGCCCACCACGTGAGTG GCTGAAGAGACCCTGGAGGCCTGGTGCCCACCACGTGAGTG < 41bp 1 0.594232408994236 1 0.283011347055435 experiment 0.811535182011528 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594096 chr19:36594100 nonsynonymous SNV 0.040 0 25 hm5C_associated_SNPs_31503 0 0 1 0 2 Nucleus 1 0.500231643921098 1 0.999536712157804 hm5C_site_31595 DeepMRMD:1;iRNA_m5C:0.999536712157804 31596 chr4 524247 524247 1 + G A PRAD 524262 + 524242 524282 41 GTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGC GTTTTATTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGC < 41bp 1 0.290552164516762 1 0.303731977939606 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:524262 chr4:524247 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_31504 0 0 1 0 1 Nucleus 1 0.500231545957176 1 0.999536908085648 hm5C_site_31596 DeepMRMD:1;iRNA_m5C:0.999536908085648 31597 chr17 79202784 79202784 1 + C T PRAD 79202783 - 79202763 79202803 41 AACATCGTCCCAGAGGACAGCAGCCAAAGAGCCTCCTGGCT AACATCGTCCCAGAGGACAACAGCCAAAGAGCCTCCTGGCT < 41bp 1 0.228846798671095 1 0.349481463432312 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79202783 chr17:79202784 nonsynonymous SNV 0.030 0 20 hm5C_associated_SNPs_31505 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31597 DeepMRMD:1;iRNA_m5C:0.999536712157815 31598 chr22 23596133 23596133 1 + C T PRAD 23596125 + 23596105 23596145 41 AGCAGCAAGGGCAGGGGCAGCCGGGATGCGCTGGTCTCGGG AGCAGCAAGGGCAGGGGCAGCCGGGATGTGCTGGTCTCGGG < 41bp 1 0.625022537879916 1 0.672729313373566 experiment 0.749954924240168 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23596125 chr22:23596133 nonsynonymous SNV 0.459 0 29 hm5C_associated_SNPs_31507 0 0 1 0 1 Ribosome 1 0.500231643921092 0.654541373252868 0.999536712157816 hm5C_site_31598 DeepMRMD:0.654541373252868;iRNA_m5C:0.999536712157816 31599 chr1 36755134 36755134 1 + G A PRAD 36755116 + 36755096 36755136 41 GGAGTCTTTCCCAGAGAGATCCAAAAAGGAAGATCGGGGCA GGAGTCTTTCCCAGAGAGATCCAAAAAGGAAGATCGGGACA < 41bp 1 0.432743773889226 1 0.199031889438629 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36755116 chr1:36755134 nonsynonymous SNV 0.996 1 39 hm5C_associated_SNPs_31508 0 0 1 0 0 Nucleus 1 0.500231643921141 1 0.999536712157719 hm5C_site_31599 DeepMRMD:1;iRNA_m5C:0.999536712157719 31600 chr5 159849845 159849845 1 + C A PRAD 159849863 + 159849843 159849883 41 GTCTGTAAAGACCAAGGGACCCCTCAAACAAAAACAGCCAA GTATGTAAAGACCAAGGGACCCCTCAAACAAAAACAGCCAA < 41bp 1 0.141210827161189 1 0.160175681114197 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTTG1 ENSG00000164611 CDS Human protein_coding chr5:159849863 chr5:159849845 nonsynonymous SNV 0.165 1 3 hm5C_associated_SNPs_31509 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31600 DeepMRMD:1;iRNA_m5C:0.999536712157815 31601 chr19 54965781 54965781 1 + C T PRAD 54965774 + 54965754 54965794 41 CACAGCACAGCCAGGCGGGGCCCGCCACGGGCCAGGCCTAT CACAGCACAGCCAGGCGGGGCCCGCCATGGGCCAGGCCTAT < 41bp 1 0.0651749059564859 1 0.193250983953476 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54965774 chr19:54965781 nonsynonymous SNV 0.166 1 28 hm5C_associated_SNPs_31510 0 0 0 0 0 chromatin 1 0.500231643921384 1 0.999536712157233 hm5C_site_31601 DeepMRMD:1;iRNA_m5C:0.999536712157233 31602 chr19 54965781 54965781 1 + C T PRAD 54965775 + 54965755 54965795 41 ACAGCACAGCCAGGCGGGGCCCGCCACGGGCCAGGCCTATG ACAGCACAGCCAGGCGGGGCCCGCCATGGGCCAGGCCTATG < 41bp 1 0.154591874448328 1 0.119299441576004 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54965775 chr19:54965781 nonsynonymous SNV 0.166 1 27 hm5C_associated_SNPs_31511 0 0 0 0 0 chromatin 1 0.500231643926214 1 0.999536712147571 hm5C_site_31602 DeepMRMD:1;iRNA_m5C:0.999536712147571 31603 chr12 53412636 53412636 1 + A G PRAD 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATGACGATGTGTATAGGGCGCCTCCAATTGGCCGTTCCA < 41bp 1 0.363390411002419 1 0.0577919185161591 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412636 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_31512 0 0 1 0 1 Cytosol 1 0.500231643911644 1 0.999536712176713 hm5C_site_31603 DeepMRMD:1;iRNA_m5C:0.999536712176713 31604 chr12 53412636 53412636 1 + A G PRAD 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGACGATGTGTATAGGGCGCCTCCAATTGGCCGTTCCATC < 41bp 1 0.0455271091149186 1 0.0808804333209991 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412636 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_31513 0 0 1 0 1 Cytosol 1 0.500231644029372 1 0.999536711941256 hm5C_site_31604 DeepMRMD:1;iRNA_m5C:0.999536711941256 31605 chr12 69044218 69044218 1 + C T PRAD 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATATGATCCTACGATAGAAGATTCTTATAGAA < 41bp 1 0.445903479380322 1 0.299214124679565 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044218 synonymous SNV . 0 13 hm5C_associated_SNPs_31514 0 0 0 0 2 Ribosome 1 0.500231641082979 1 0.999536717834042 hm5C_site_31605 DeepMRMD:1;iRNA_m5C:0.999536717834042 31606 chr12 132334397 132334397 1 + C T PRAD 132334394 + 132334374 132334414 41 ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCGACTTC ATAACGTAGAGGAAGGATACCCGTGCCCCGTCTCCGACTTC < 41bp 1 0.127874745631973 1 0.188537925481796 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334394 chr12:132334397 nonsynonymous SNV 0.953 4 24 hm5C_associated_SNPs_31515 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_31606 DeepMRMD:1;iRNA_m5C:0.999536712157816 31607 chr17 41345493 41345493 1 + G A PRAD 41345492 + 41345472 41345512 41 TGCCCCAGCCTTGGAGGGAACGTATACTTCCCATTGGCGTC TGCCCCAGCCTTGGAGGGAACATATACTTCCCATTGGCGTC < 41bp 1 0.202338160582638 1 0.126628667116165 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41345492 chr17:41345493 synonymous SNV . 0 22 hm5C_associated_SNPs_31516 0 0 1 0 0 Cytosol 1 0.500231643920664 1 0.999536712158671 hm5C_site_31607 DeepMRMD:1;iRNA_m5C:0.999536712158671 31608 chr11 581559 581559 1 + C T PRAD 581546 + 581526 581566 41 GCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCCGGATGGA GCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCTGGATGGA < 41bp 1 0.602972611905256 1 0.664305806159973 experiment 0.794054776189488 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581546 chr11:581559 nonsynonymous SNV 0.019 2 34 hm5C_associated_SNPs_31517 0 0 1 0 3 Nucleus 1 0.500231643921095 0.671388387680054 0.999536712157811 hm5C_site_31608 DeepMRMD:0.671388387680054;iRNA_m5C:0.999536712157811 31609 chr3 52325023 52325023 1 + C T PRAD 52325038 + 52325018 52325058 41 GGGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG GGGTGTGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGG < 41bp 1 0.580638197645782 1 0.694418668746948 experiment 0.838723604708436 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325038 chr3:52325023 nonsynonymous SNV 0.830 3 6 hm5C_associated_SNPs_31518 0 0 1 0 1 chromatin 1 0.500231644593246 0.611162662506104 0.999536710813508 hm5C_site_31609 DeepMRMD:0.611162662506104;iRNA_m5C:0.999536710813508 31610 chr1 16046306 16046306 1 + C T PRAD 16046286 + 16046266 16046306 41 ACTACTACAAACCTCAGTACCTGCTGGACTTTGAAGACCGC ACTACTACAAACCTCAGTACCTGCTGGACTTTGAAGACCGT < 41bp 1 0.236680156251987 1 0.250664591789246 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16046286 chr1:16046306 synonymous SNV . 0 41 hm5C_associated_SNPs_31519 0 0 1 0 1 chromatin 1 0.500231645468132 1 0.999536709063735 hm5C_site_31610 DeepMRMD:1;iRNA_m5C:0.999536709063735 31611 chr5 154174848 154174848 1 + C T PRAD 154174837 + 154174817 154174857 41 ACCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCAC ACCCTTATTGCTTCCTTCCACCGAGTGCAGGTCCTTACCAC < 41bp 1 0.370850626026568 1 0.773802280426025 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174837 chr5:154174848 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_31520 0 0 1 0 1 Cytosol 1 0.500231598945553 0.45239543914795 0.999536802108895 hm5C_site_31611 DeepMRMD:0.45239543914795;iRNA_m5C:0.999536802108895 31612 chr5 154174848 154174848 1 + C T PRAD 154174838 + 154174818 154174858 41 CCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCACT CCCTTATTGCTTCCTTCCACCGAGTGCAGGTCCTTACCACT < 41bp 1 0.334479183096067 1 0.882761001586914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174838 chr5:154174848 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_31521 0 0 1 0 1 Cytosol 1 0.500231643870454 0.234477996826172 0.999536712259092 hm5C_site_31612 DeepMRMD:0.234477996826172;iRNA_m5C:0.999536712259092 31613 chr15 69747804 69747804 1 + C T PRAD 69747788 + 69747768 69747808 41 TGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGAGG TGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCTGAGG < 41bp 1 0.424960039642753 1 0.778047144412994 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747788 chr15:69747804 nonsynonymous SNV 0.967 0 37 hm5C_associated_SNPs_31522 0 0 1 0 1 Cytosol 1 0.5002316437439 0.443905711174012 0.9995367125122 hm5C_site_31613 DeepMRMD:0.443905711174012;iRNA_m5C:0.9995367125122 31614 chr15 69747804 69747804 1 + C T PRAD 69747803 + 69747783 69747823 41 GGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACA GGAAGCAAAGAAAGAAGAATCTGAGGAGTCTGATGATGACA < 41bp 1 0.592048908581764 1 0.506523072719574 experiment 0.815902182836472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747803 chr15:69747804 nonsynonymous SNV 0.967 0 22 hm5C_associated_SNPs_31523 0 0 1 0 1 Cytosol 1 0.500232496496512 0.986953854560852 0.999535007006977 hm5C_site_31614 DeepMRMD:0.986953854560852;iRNA_m5C:0.999535007006977 31615 chr15 69747804 69747804 1 + C T PRAD 69747822 + 69747802 69747842 41 TCCGAGGAGTCTGATGATGACATGGGCTTTGGTCTTTTTGA TCTGAGGAGTCTGATGATGACATGGGCTTTGGTCTTTTTGA < 41bp 1 0.481320693985693 1 0.674788594245911 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747822 chr15:69747804 nonsynonymous SNV 0.967 0 3 hm5C_associated_SNPs_31524 0 0 1 0 1 Cytosol 1 0.500231575527131 0.650422811508178 0.999536848945738 hm5C_site_31615 DeepMRMD:0.650422811508178;iRNA_m5C:0.999536848945738 31616 chr19 36216181 36216181 1 + C T PRAD 36216189 + 36216169 36216209 41 CTCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT CTCACCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCT < 41bp 1 0.0135129874915866 1 0.0529113113880157 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216189 chr19:36216181 nonsynonymous SNV 0.967 5 13 hm5C_associated_SNPs_31525 0 0 1 0 2 chromatin 1 0.500231643923674 1 0.999536712152652 hm5C_site_31616 DeepMRMD:1;iRNA_m5C:0.999536712152652 31617 chr19 36216181 36216181 1 + C T PRAD 36216190 + 36216170 36216210 41 TCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG TCACCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTG < 41bp 1 0.037980104732309 1 0.112033069133759 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216190 chr19:36216181 nonsynonymous SNV 0.967 5 12 hm5C_associated_SNPs_31526 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31617 DeepMRMD:1;iRNA_m5C:0.999536712157815 31618 chr19 36216181 36216181 1 + C T PRAD 36216191 + 36216171 36216211 41 CACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT CACCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTGT < 41bp 1 0.102217445335872 1 0.171171188354492 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216191 chr19:36216181 nonsynonymous SNV 0.967 5 11 hm5C_associated_SNPs_31527 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31618 DeepMRMD:1;iRNA_m5C:0.999536712157815 31619 chr19 36216181 36216181 1 + C T PRAD 36216192 + 36216172 36216212 41 ACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTG ACCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTGTG < 41bp 1 0.464004850159276 1 0.692130446434021 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216192 chr19:36216181 nonsynonymous SNV 0.967 5 10 hm5C_associated_SNPs_31528 0 0 1 0 2 chromatin 1 0.500231643921092 0.615739107131958 0.999536712157815 hm5C_site_31619 DeepMRMD:0.615739107131958;iRNA_m5C:0.999536712157815 31620 chr19 36216181 36216181 1 + C T PRAD 36216193 + 36216173 36216213 41 CCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGT CCTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGT < 41bp 1 0.108749084107723 1 0.31636369228363 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216193 chr19:36216181 nonsynonymous SNV 0.967 5 9 hm5C_associated_SNPs_31529 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31620 DeepMRMD:1;iRNA_m5C:0.999536712157815 31621 chr19 36216181 36216181 1 + C T PRAD 36216194 + 36216174 36216214 41 CTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGTG CTCTGTGTCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGTG < 41bp 1 0.33092053818172 1 0.838261485099792 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216194 chr19:36216181 nonsynonymous SNV 0.967 5 8 hm5C_associated_SNPs_31530 0 0 1 0 2 chromatin 1 0.500231643921093 0.323477029800416 0.999536712157815 hm5C_site_31621 DeepMRMD:0.323477029800416;iRNA_m5C:0.999536712157815 31622 chr5 156816239 156816239 1 + C T PRAD 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC TGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC < 41bp 1 0.309611065019863 1 0.634523034095764 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816239 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_31531 0 0 0 0 1 Cytosol 1 0.500292619968294 0.730953931808472 0.999414760063412 hm5C_site_31622 DeepMRMD:0.730953931808472;iRNA_m5C:0.999414760063412 31623 chr19 45805775 45805775 1 + G A PRAD 45805757 + 45805737 45805777 41 TCTGCGCCAGGCCACAGCAGCCGCCCGCTGCCGCTGCCGCC TCTGCGCCAGGCCACAGCAGCCGCCCGCTGCCGCTGCCACC < 41bp 1 0.272029748120766 1 0.376783311367035 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45805757 chr19:45805775 nonsynonymous SNV 0.999 2 39 hm5C_associated_SNPs_31532 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31623 DeepMRMD:1;iRNA_m5C:0.999536712157815 31624 chr5 139060706 139060706 1 + G A PRAD 139060711 + 139060691 139060731 41 GCTGTGGCAGGTGCCGAAGCCCTCAATGGCCAGTCCGACTT GCTGTGGCAGGTGCCAAAGCCCTCAATGGCCAGTCCGACTT < 41bp 1 0.512054429580756 1 0.533810615539551 experiment 0.975891140838488 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXXC5 ENSG00000171604 CDS Human protein_coding chr5:139060711 chr5:139060706 nonsynonymous SNV 0.975 2 16 hm5C_associated_SNPs_31533 0 0 1 0 0 Ribosome 1 0.500230983235323 0.932378768920898 0.999538033529354 hm5C_site_31624 DeepMRMD:0.932378768920898;iRNA_m5C:0.999538033529354 31625 chr10 104140354 104140354 1 + C T PRAD 104140373 + 104140353 104140393 41 CCCTCGGCCCTCTGGGAGATCACCTGGGAACGCATTGACTG CTCTCGGCCCTCTGGGAGATCACCTGGGAACGCATTGACTG < 41bp 1 0.442665879109932 1 0.12098416686058 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104140373 chr10:104140354 nonsynonymous SNV 0.675 0 2 hm5C_associated_SNPs_31534 0 0 1 0 1 Nucleus 1 0.500231643936067 1 0.999536712127866 hm5C_site_31625 DeepMRMD:1;iRNA_m5C:0.999536712127866 31626 chr14 24909614 24909614 1 + C T PRAD 24909627 - 24909607 24909647 41 TTCGCCTGGGCCTGGGGGGCCCCATCGGCTCAGGCCACCAA TTCGCCTGGGCCTGGGGGGCCCCATCGGCTCAGACCACCAA < 41bp 1 0.288556822322821 1 0.419655352830887 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SDR39U1 ENSG00000100445 CDS Human protein_coding chr14:24909627 chr14:24909614 nonsynonymous SNV 0.995 3 34 hm5C_associated_SNPs_31535 0 0 1 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31626 DeepMRMD:1;iRNA_m5C:0.999536712157815 31627 chr16 29853338 29853338 1 + G A PRAD 29853323 + 29853303 29853343 41 GCTGGGCGGCCCAAGCGTCCCCATGCCCGCCGTGCGCTCTG GCTGGGCGGCCCAAGCGTCCCCATGCCCGCCGTGCACTCTG < 41bp 1 0.311893958687262 1 0.0607756376266479 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29853323 chr16:29853338 synonymous SNV . 0 36 hm5C_associated_SNPs_31536 0 0 0 1 0 Nucleus 1 0.50023183378799 1 0.99953633242402 hm5C_site_31627 DeepMRMD:1;iRNA_m5C:0.99953633242402 31628 chr20 44505965 44505965 1 + G A PRAD 44505985 + 44505965 44506005 41 GGAGACAGTCACCTCTGTGGCCAAGATGCTGAGCATCTTCA AGAGACAGTCACCTCTGTGGCCAAGATGCTGAGCATCTTCA < 41bp 1 0.248772584479544 1 0.184141635894775 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM3 ENSG00000132801 CDS Human protein_coding chr20:44505985 chr20:44505965 synonymous SNV . 0 1 hm5C_associated_SNPs_31537 0 0 0 0 0 Cytosol 1 0.500231187937199 1 0.999537624125603 hm5C_site_31628 DeepMRMD:1;iRNA_m5C:0.999537624125603 31629 chr9 80915565 80915565 1 + C T PRAD 80915575 + 80915555 80915595 41 AAGGAGTTGGCATTAGTGTTCTTGGTAAGATTTACTTTTGA AAGGAGTTGGTATTAGTGTTCTTGGTAAGATTTACTTTTGA < 41bp 1 0.411302445769665 1 0.524655163288116 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80915575 chr9:80915565 synonymous SNV . 0 11 hm5C_associated_SNPs_31538 0 0 1 0 2 Ribosome 1 0.500231643921092 0.950689673423768 0.999536712157815 hm5C_site_31629 DeepMRMD:0.950689673423768;iRNA_m5C:0.999536712157815 31630 chr19 5914990 5914990 1 + G A PRAD 5914985 + 5914965 5915005 41 GGCCCGGGAGGCTGTCATCGCAGCTGCATTTGCCAAGCTGG GGCCCGGGAGGCTGTCATCGCAGCTACATTTGCCAAGCTGG < 41bp 1 0.582075255317953 1 0.636034309864044 experiment 0.835849489364095 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPS ENSG00000105519 CDS Human protein_coding chr19:5914985 chr19:5914990 nonsynonymous SNV 0.807 4 26 hm5C_associated_SNPs_31539 0 0 0 0 2 chromatin 1 0.500231643921098 0.727931380271912 0.999536712157804 hm5C_site_31630 DeepMRMD:0.727931380271912;iRNA_m5C:0.999536712157804 31631 chr17 73695894 73695894 1 + G A PRAD 73695888 + 73695868 73695908 41 TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAA TTTTCTGAAAGAGTTCGGAACATGTCACCTGATGAAATCAA < 41bp 1 0.161767879476923 1 0.126861184835434 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695888 chr17:73695894 synonymous SNV . 0 27 hm5C_associated_SNPs_31541 0 0 1 0 2 Cytosol 1 0.500231643917628 1 0.999536712164743 hm5C_site_31631 DeepMRMD:1;iRNA_m5C:0.999536712164743 31632 chr17 73695894 73695894 1 + G A PRAD 73695893 + 73695873 73695913 41 TGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCC TGAAAGAGTTCGGAACATGTCACCTGATGAAATCAAGATCC < 41bp 1 0.668918765961822 1 0.249758750200272 experiment 0.662162468076355 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695893 chr17:73695894 synonymous SNV . 0 22 hm5C_associated_SNPs_31542 0 0 1 0 2 Cytosol 1 0.500231643920998 1 0.999536712158003 hm5C_site_31632 DeepMRMD:1;iRNA_m5C:0.999536712158003 31633 chr17 73695894 73695894 1 + G A PRAD 73695896 + 73695876 73695916 41 AAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC AAGAGTTCGGAACATGTCACCTGATGAAATCAAGATCCCGC < 41bp 1 0.385042477558974 1 0.161513328552246 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695896 chr17:73695894 synonymous SNV . 0 19 hm5C_associated_SNPs_31543 0 0 1 0 2 Cytosol 1 0.500231515096359 1 0.999536969807282 hm5C_site_31633 DeepMRMD:1;iRNA_m5C:0.999536969807282 31634 chr10 75519998 75519998 1 + G T PRAD 75520010 + 75519990 75520030 41 TGGACAGAGTTTTGGAGGGCCCTCAGTGAGCCAGCCCAACC TGGACAGATTTTTGGAGGGCCCTCAGTGAGCCAGCCCAACC < 41bp 1 0.233354314833126 1 0.0679931044578552 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520010 chr10:75519998 nonsynonymous SNV 0.992 0 9 hm5C_associated_SNPs_31546 0 0 1 0 0 Nucleus 1 0.500231643620675 1 0.99953671275865 hm5C_site_31634 DeepMRMD:1;iRNA_m5C:0.99953671275865 31635 chr9 129458221 129458221 1 + C T PRAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGGCAGCAGTGACCCCTTCCAGCAGGG < 41bp 1 0.352589535782363 1 0.49655619263649 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458221 synonymous SNV . 0 24 hm5C_associated_SNPs_31547 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392109 1 0.99953671215782 hm5C_site_31635 DeepMRMD:1;iRNA_m5C:0.99953671215782 31636 chr19 18254660 18254660 1 + C T PRAD 18254659 + 18254639 18254679 41 CAGCCCATCTCTCCTGAATACCATCAGCCTGGACACAATGC CAGCCCATCTCTCCTGAATACTATCAGCCTGGACACAATGC < 41bp 1 0.0410119870595199 1 0.0230736136436462 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18254659 chr19:18254660 synonymous SNV . 0 22 hm5C_associated_SNPs_31548 0 0 1 0 1 Cytosol 1 0.500231643922168 1 0.999536712155664 hm5C_site_31636 DeepMRMD:1;iRNA_m5C:0.999536712155664 31637 chr12 56420735 56420735 1 + C T PRAD 56420731 + 56420711 56420751 41 GAGCCTCACTCCCCTGGGGGCATCCGGCTGCCCAATGGCAA GAGCCTCACTCCCCTGGGGGCATCTGGCTGCCCAATGGCAA < 41bp 1 0.152651130695045 1 0.0486019253730774 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56420731 chr12:56420735 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_31549 0 0 1 0 1 Cytosol 1 0.500231643921085 1 0.999536712157829 hm5C_site_31637 DeepMRMD:1;iRNA_m5C:0.999536712157829 31638 chr7 114655765 114655765 1 + G T PRAD 114655752 + 114655732 114655772 41 GAAAATGAAGATTGTTGTGTCCACTGTATCCTGGCTTGCTT GAAAATGAAGATTGTTGTGTCCACTGTATCCTGTCTTGCTT < 41bp 1 0.189618304118224 1 0.0642274618148804 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MDFIC ENSG00000135272 CDS Human protein_coding chr7:114655752 chr7:114655765 nonsynonymous SNV 0.987 3 34 hm5C_associated_SNPs_31550 0 0 1 0 1 Cytosol 1 0.500250110855708 1 0.999499778288584 hm5C_site_31638 DeepMRMD:1;iRNA_m5C:0.999499778288584 31639 chr20 60701437 60701437 1 + C T PRAD 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTATGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC < 41bp 1 0.683423085340313 1 0.579988420009613 experiment 0.633153829319374 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701437 synonymous SNV . 0 10 hm5C_associated_SNPs_31552 0 0 1 0 2 Ribosome 1 0.500231643921103 0.840023159980774 0.999536712157794 hm5C_site_31639 DeepMRMD:0.840023159980774;iRNA_m5C:0.999536712157794 31640 chr7 142459692 142459692 1 + G A PRAD 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGAATGAGCAGTTCATCAATACAGCCAAG < 41bp 1 0.511835117563471 1 0.28618198633194 experiment 0.976329764873058 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459692 nonsynonymous SNV 0.019 1 33 hm5C_associated_SNPs_31553 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_31640 DeepMRMD:1;iRNA_m5C:0.999536712157814 31641 chr7 142459692 142459692 1 + G A PRAD 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATGAGCAGTTCATCAATACAGCCAAGATCAT < 41bp 1 0.622217631754706 1 0.0652643144130707 experiment 0.755564736490589 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459692 nonsynonymous SNV 0.019 1 28 hm5C_associated_SNPs_31554 0 0 0 0 1 Cytosol 1 0.500231643922057 1 0.999536712155886 hm5C_site_31641 DeepMRMD:1;iRNA_m5C:0.999536712155886 31642 chr7 142459692 142459692 1 + G A PRAD 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATACAGCCAAGATCATCCGCCACC < 41bp 1 0.576032078123726 1 0.0202282667160034 experiment 0.847935843752549 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459692 nonsynonymous SNV 0.019 1 20 hm5C_associated_SNPs_31556 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_31642 DeepMRMD:1;iRNA_m5C:0.999536712157815 31643 chr7 142459692 142459692 1 + G A PRAD 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATACAGCCAAGATCATCCGCCACCCCC < 41bp 1 0.421877436084748 1 0.248429030179977 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459692 nonsynonymous SNV 0.019 1 17 hm5C_associated_SNPs_31557 0 0 0 0 1 Cytosol 1 0.500231644009432 1 0.999536711981136 hm5C_site_31643 DeepMRMD:1;iRNA_m5C:0.999536711981136 31644 chr7 142459692 142459692 1 + G A PRAD 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATACAGCCAAGATCATCCGCCACCCCCAATACGA < 41bp 1 0.290680672327805 1 0.0941267311573029 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459692 nonsynonymous SNV 0.019 1 10 hm5C_associated_SNPs_31558 0 0 0 0 1 Cytosol 1 0.500231641859464 1 0.999536716281072 hm5C_site_31644 DeepMRMD:1;iRNA_m5C:0.999536716281072 31645 chr7 142459692 142459692 1 + G A PRAD 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATACAGCCAAGATCATCCGCCACCCCCAATACGACAG < 41bp 1 0.321820897370325 1 0.444861710071564 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459692 nonsynonymous SNV 0.019 1 7 hm5C_associated_SNPs_31559 0 0 0 0 1 Cytosol 1 0.500231464349389 1 0.999537071301221 hm5C_site_31645 DeepMRMD:1;iRNA_m5C:0.999537071301221 31646 chr7 142459692 142459692 1 + G A PRAD 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATACAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA < 41bp 1 0.112751813769846 1 0.0753328502178192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459692 nonsynonymous SNV 0.019 1 4 hm5C_associated_SNPs_31561 0 0 0 0 1 Cytosol 1 0.500231642028903 1 0.999536715942194 hm5C_site_31646 DeepMRMD:1;iRNA_m5C:0.999536715942194 31647 chr7 142459692 142459692 1 + G A PRAD 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATACAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG < 41bp 1 0.184862500887195 1 0.137655943632126 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459692 nonsynonymous SNV 0.019 1 3 hm5C_associated_SNPs_31562 0 0 0 0 1 Cytosol 1 0.500231643467525 1 0.99953671306495 hm5C_site_31647 DeepMRMD:1;iRNA_m5C:0.99953671306495 31648 chr7 142459692 142459692 1 + G A PRAD 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC ACAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.146548582195884 1 0.0738962590694427 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459692 nonsynonymous SNV 0.019 1 1 hm5C_associated_SNPs_31563 0 0 0 0 1 Cytosol 1 0.500231643782303 1 0.999536712435394 hm5C_site_31648 DeepMRMD:1;iRNA_m5C:0.999536712435394 31649 chr19 54969700 54969700 1 + C T PRAD 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAT < 41bp 1 0.111995207928267 1 0.200193285942078 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969700 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_31564 0 0 1 0 1 chromatin 1 0.500227909928695 1 0.99954418014261 hm5C_site_31649 DeepMRMD:1;iRNA_m5C:0.99954418014261 31650 chr7 157041158 157041158 1 + G A PRAD 157041160 + 157041140 157041180 41 GTGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA GTGGACATTCACCACCTCACCTCCCTAGACCCTGAGGTGTA < 41bp 1 0.395594131238139 1 0.559426188468933 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157041160 chr7:157041158 nonsynonymous SNV 0.351 3 19 hm5C_associated_SNPs_31566 0 0 1 0 1 Ribosome 1 0.500231643921092 0.881147623062134 0.999536712157815 hm5C_site_31650 DeepMRMD:0.881147623062134;iRNA_m5C:0.999536712157815 31651 chr2 71654016 71654016 1 + G T PRAD 71654019 + 71653999 71654039 41 CAGTGGCTGAAGAACAAGATCTCCTCAAACAGGAACGCTTG CAGTGGCTGAAGAACAATATCTCCTCAAACAGGAACGCTTG < 41bp 1 0.526438904798198 1 0.519667685031891 experiment 0.947122190403603 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71654019 chr2:71654016 nonsynonymous SNV 0.998 4 18 hm5C_associated_SNPs_31567 0 0 1 0 0 Nucleus 1 0.500231643921092 0.960664629936218 0.999536712157815 hm5C_site_31651 DeepMRMD:0.960664629936218;iRNA_m5C:0.999536712157815 31652 chr1 240492719 240492719 1 + G T PRAD 240492713 + 240492693 240492733 41 CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC CCTGTTCCAGTCCACATTTTCAGAAATCATTTGCTCAATTC < 41bp 1 0.57848329401557 1 0.711894035339355 experiment 0.84303341196886 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FMN2 ENSG00000155816 CDS Human protein_coding chr1:240492713 chr1:240492719 nonsynonymous SNV 0.985 4 27 hm5C_associated_SNPs_31568 0 0 0 0 2 Endoplasmic reticulum 1 0.500231698617656 0.57621192932129 0.999536602764688 hm5C_site_31652 DeepMRMD:0.57621192932129;iRNA_m5C:0.999536602764688 31653 chr11 44092838 44092838 1 + A G PRAD 44092826 + 44092806 44092846 41 GGCATCATTAACTTGGGCACCAGTGAGAACAAACTCTGCTT GGCATCATTAACTTGGGCACCAGTGAGAACAAGCTCTGCTT < 41bp 1 0.382871832759532 1 0.497069954872131 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACCS ENSG00000110455 CDS Human protein_coding chr11:44092826 chr11:44092838 synonymous SNV . 0 33 hm5C_associated_SNPs_31570 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_31653 DeepMRMD:1;iRNA_m5C:0.999536712157816 31654 chr1 36028872 36028872 1 + G T PRAD 36028874 + 36028854 36028894 41 GATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGT GATCCTGATCAAGGAAGGTGCCCCCTCGCTTCTGTGCAAGT < 41bp 1 0.071213300989679 1 0.095507025718689 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028874 chr1:36028872 synonymous SNV . 0 19 hm5C_associated_SNPs_31571 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643907573 1 0.999536712184853 hm5C_site_31654 DeepMRMD:1;iRNA_m5C:0.999536712184853 31655 chr1 36028872 36028872 1 + G T PRAD 36028876 + 36028856 36028896 41 TCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGTAT TCCTGATCAAGGAAGGTGCCCCCTCGCTTCTGTGCAAGTAT < 41bp 1 0.0351310587386012 1 0.0712760388851166 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028876 chr1:36028872 synonymous SNV . 0 17 hm5C_associated_SNPs_31572 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643886133 1 0.999536712227733 hm5C_site_31655 DeepMRMD:1;iRNA_m5C:0.999536712227733 31656 chr5 147796680 147796680 1 + A C PRAD 147796689 + 147796669 147796709 41 ACATCCACGACAACAATCACCATCATCCAGATGACTCAGAC ACATCCACGACCACAATCACCATCATCCAGATGACTCAGAC < 41bp 1 0.505709790841905 1 0.0608231723308563 experiment 0.988580418316189 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147796689 chr5:147796680 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_31573 0 0 1 0 1 Ribosome 1 0.500783707484212 1 0.998432585031576 hm5C_site_31656 DeepMRMD:1;iRNA_m5C:0.998432585031576 31657 chr19 45494556 45494556 1 + A G PRAD 45494552 + 45494532 45494572 41 CTCCTGGGCTGCTATGCCGTCTACAGTCTTCTGTACCTGGA CTCCTGGGCTGCTATGCCGTCTACGGTCTTCTGTACCTGGA < 41bp 1 0.65799533645285 1 0.394010186195374 experiment 0.6840093270943 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45494552 chr19:45494556 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_31574 0 0 1 0 2 Cytosol 1 0.500231643872306 1 0.999536712255388 hm5C_site_31657 DeepMRMD:1;iRNA_m5C:0.999536712255388 31658 chr1 154988869 154988869 1 + A G PRAD 154988871 + 154988851 154988891 41 AGGCTTTCGCCAAGGAGGACCACCTGCAGCGCCACCTCAAA AGGCTTTCGCCAAGGAGGGCCACCTGCAGCGCCACCTCAAA < 41bp 1 0.207403841903405 1 0.310028195381165 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154988871 chr1:154988869 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_31575 0 0 1 0 0 chromatin 1 0.500231644009607 1 0.999536711980785 hm5C_site_31658 DeepMRMD:1;iRNA_m5C:0.999536711980785 31659 chr5 34925038 34925038 1 + A G PRAD 34925039 + 34925019 34925059 41 TCCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCCT TCCAGGGAAGTTTTGGAGGGCCAACTTTATATGAAAATCCT < 41bp 1 0.0768009746157267 1 0.111791163682938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34925039 chr5:34925038 synonymous SNV . 0 20 hm5C_associated_SNPs_31576 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31659 DeepMRMD:1;iRNA_m5C:0.999536712157815 31660 chr5 34925038 34925038 1 + A G PRAD 34925040 + 34925020 34925060 41 CCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCCTC CCAGGGAAGTTTTGGAGGGCCAACTTTATATGAAAATCCTC < 41bp 1 0.362742886749377 1 0.135796725749969 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34925040 chr5:34925038 synonymous SNV . 0 19 hm5C_associated_SNPs_31577 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31660 DeepMRMD:1;iRNA_m5C:0.999536712157815 31661 chr19 39899003 39899003 1 + C G PRAD 39899016 + 39898996 39899036 41 TCTCGCCCTCCAGCTCCCCACCACCACCTGGGGACCTTCCA TCTCGCCGTCCAGCTCCCCACCACCACCTGGGGACCTTCCA < 41bp 1 0.14587413710116 1 0.0602598488330841 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZFP36 ENSG00000128016 CDS Human protein_coding chr19:39899016 chr19:39899003 synonymous SNV . 0 8 hm5C_associated_SNPs_31578 0 0 1 0 0 nucleus 1 0.500231643904195 1 0.999536712191611 hm5C_site_31661 DeepMRMD:1;iRNA_m5C:0.999536712191611 31662 chr7 100861489 100861489 1 + A G PRAD 100861474 + 100861454 100861494 41 CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACT CTTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGGAAACT < 41bp 1 0.107983004516651 1 0.122425854206085 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100861474 chr7:100861489 nonsynonymous SNV 0.999 1 36 hm5C_associated_SNPs_31579 0 0 1 0 1 Cytosol 1 0.500231643918769 1 0.999536712162462 hm5C_site_31662 DeepMRMD:1;iRNA_m5C:0.999536712162462 31663 chr7 100861489 100861489 1 + A G PRAD 100861475 + 100861455 100861495 41 TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGAAAACTT TTCCGACAGTTGTGTTGTGCCAATGGTGGAGAAGGAAACTT < 41bp 1 0.460477901986726 1 0.507867455482483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100861475 chr7:100861489 nonsynonymous SNV 0.999 1 35 hm5C_associated_SNPs_31580 0 0 1 0 1 Cytosol 1 0.500231641225086 0.984265089035034 0.999536717549829 hm5C_site_31663 DeepMRMD:0.984265089035034;iRNA_m5C:0.999536717549829 31664 chr16 2011248 2011248 1 + C G PRAD 2011268 + 2011248 2011288 41 CATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG GATCATGTGCATGTATGAAGCCGAAATGCAGTGGAAGAGGG < 41bp 1 0.651293777200329 1 0.476713448762894 experiment 0.697412445599342 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011268 chr16:2011248 nonsynonymous SNV 0.000 4 1 hm5C_associated_SNPs_31581 0 0 1 0 2 Ribosome 1 0.500233229915276 1 0.999533540169449 hm5C_site_31664 DeepMRMD:1;iRNA_m5C:0.999533540169449 31665 chr1 17949669 17949669 1 + C T PRAD 17949656 + 17949636 17949676 41 CCACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGGTAAGT CCACCGAGAAGATCGGGGACCTCTTCGTGGCCTTGGTAAGT < 41bp 1 0.125170261550767 1 0.0229838192462921 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17949656 chr1:17949669 nonsynonymous SNV 0.921 4 34 hm5C_associated_SNPs_31582 0 0 1 0 1 Nucleus 1 0.500231643901914 1 0.999536712196172 hm5C_site_31665 DeepMRMD:1;iRNA_m5C:0.999536712196172 31666 chr10 103906642 103906642 1 + A G PRAD 103906635 + 103906615 103906655 41 TCCATGTGGGCTCTGGGGACCATGACTATTGTGTCCGGAGC TCCATGTGGGCTCTGGGGACCATGACTGTTGTGTCCGGAGC < 41bp 1 0.405883575505274 1 0.263649374246597 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103906635 chr10:103906642 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_31583 0 0 1 0 0 Cytosol 1 0.500231643956461 1 0.999536712087078 hm5C_site_31666 DeepMRMD:1;iRNA_m5C:0.999536712087078 31667 chr1 218520075 218520075 1 + T C PRAD 218520059 + 218520039 218520079 41 AAAAAATGCACTACTGTGTGCTGAGCGCTTTTCTGATCCTG AAAAAATGCACTACTGTGTGCTGAGCGCTTTTCTGACCCTG < 41bp 1 0.197567724993694 1 0.0949034094810486 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TGFB2 ENSG00000092969 CDS Human protein_coding chr1:218520059 chr1:218520075 nonsynonymous SNV 0.998 0 37 hm5C_associated_SNPs_31584 0 0 0 0 0 Ribosome 1 0.500231189440098 1 0.999537621119803 hm5C_site_31667 DeepMRMD:1;iRNA_m5C:0.999537621119803 31668 chr19 1434835 1434835 1 + G C PRAD 1434836 + 1434816 1434856 41 TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG TCCGTGCCAGGGTCGGGGGCCCCCCCCGCCGGCGGCAGCGG < 41bp 1 0.325989656308938 1 0.191432923078537 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434836 chr19:1434835 nonsynonymous SNV 0.982 1 20 hm5C_associated_SNPs_31585 0 0 1 0 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_31668 DeepMRMD:1;iRNA_m5C:0.999536712157818 31669 chr19 1434835 1434835 1 + G C PRAD 1434837 + 1434817 1434857 41 CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC CCGTGCCAGGGTCGGGGGCCCCCCCCGCCGGCGGCAGCGGC < 41bp 1 0.425315274709722 1 0.150769174098969 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434837 chr19:1434835 nonsynonymous SNV 0.982 1 19 hm5C_associated_SNPs_31586 0 0 1 0 1 chromatin 1 0.500231643921081 1 0.999536712157837 hm5C_site_31669 DeepMRMD:1;iRNA_m5C:0.999536712157837 31670 chr19 1434835 1434835 1 + G C PRAD 1434838 + 1434818 1434858 41 CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT CGTGCCAGGGTCGGGGGCCCCCCCCGCCGGCGGCAGCGGCT < 41bp 1 0.502281230280361 1 0.402179539203644 experiment 0.995437539439279 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434838 chr19:1434835 nonsynonymous SNV 0.982 1 18 hm5C_associated_SNPs_31587 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_31670 DeepMRMD:1;iRNA_m5C:0.999536712157814 31671 chrX 129149433 129149433 1 + C T PRAD 129149429 + 129149409 129149449 41 GCAACCACGGCCTGGGGGCTCCTTCGTTCCAGAGCAGGACC GCAACCACGGCCTGGGGGCTCCTTTGTTCCAGAGCAGGACC < 41bp 1 0.0388103577449334 1 0.11536905169487 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129149429 chrX:129149433 synonymous SNV . 0 25 hm5C_associated_SNPs_31589 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157811 hm5C_site_31671 DeepMRMD:1;iRNA_m5C:0.999536712157811 31672 chr11 71209471 71209471 1 + C T PRAD 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GTGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT < 41bp 1 0.182147535377473 1 0.323517173528671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209471 nonsynonymous SNV 0.050 2 2 hm5C_associated_SNPs_31590 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31672 DeepMRMD:1;iRNA_m5C:0.999536712157815 31673 chr19 17836873 17836873 1 + T A PRAD 17836880 + 17836860 17836900 41 CCCTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCT CCCTTCGAGCTGCAGGAGCCCCCGACCTCCGGGGGCTTCCT < 41bp 1 0.494495194693459 1 0.350726306438446 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836880 chr19:17836873 nonsynonymous SNV 0.097 3 14 hm5C_associated_SNPs_31591 0 0 1 0 0 Cytosol 1 0.500231643921108 1 0.999536712157783 hm5C_site_31673 DeepMRMD:1;iRNA_m5C:0.999536712157783 31674 chr19 17836873 17836873 1 + T A PRAD 17836882 + 17836862 17836902 41 CTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCTCA CTTCGAGCTGCAGGAGCCCCCGACCTCCGGGGGCTTCCTCA < 41bp 1 0.398650872442513 1 0.407583296298981 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836882 chr19:17836873 nonsynonymous SNV 0.097 3 12 hm5C_associated_SNPs_31592 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31674 DeepMRMD:1;iRNA_m5C:0.999536712157815 31675 chr18 48604690 48604690 1 + T A PRAD 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA ATTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA < 41bp 1 0.477961404653768 1 0.709270358085632 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604690 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_31593 0 0 1 0 1 Cytosol 1 0.500231643921092 0.581459283828736 0.999536712157815 hm5C_site_31675 DeepMRMD:0.581459283828736;iRNA_m5C:0.999536712157815 31676 chr15 57565238 57565238 1 + G A PRAD 57565228 + 57565208 57565248 41 GTTGTTACTTTATTTTCTAGCAGTACTAATGAAGATGAGGA GTTGTTACTTTATTTTCTAGCAGTACTAATAAAGATGAGGA < 41bp 1 0.215036811530664 1 0.209349751472473 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57565228 chr15:57565238 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_31595 0 0 1 0 2 Cytosol 1 0.500231568209874 1 0.999536863580251 hm5C_site_31676 DeepMRMD:1;iRNA_m5C:0.999536863580251 31677 chr1 25679432 25679432 1 + A G PRAD 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTGTGTGGATTCTTTTTGGAGGTTATGTTGCT < 41bp 1 0.118398199951695 1 0.0334527492523193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679432 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_31596 0 0 1 2 2 Ribosome 1 0.500232355369533 1 0.999535289260933 hm5C_site_31677 DeepMRMD:1;iRNA_m5C:0.999535289260933 31678 chr6 31937454 31937454 1 + C T PRAD 31937462 + 31937442 31937482 41 ACCTTGCTACGGCGGGACATCGTATTTGCGGCCAGCCTCTA ACCTTGCTACGGTGGGACATCGTATTTGCGGCCAGCCTCTA < 41bp 1 0.313245342546222 1 0.327284455299377 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31937462 chr6:31937454 nonsynonymous SNV 0.898 4 13 hm5C_associated_SNPs_31597 0 0 1 0 0 chromatin 1 0.500231643932968 1 0.999536712134064 hm5C_site_31678 DeepMRMD:1;iRNA_m5C:0.999536712134064 31679 chr17 49239114 49239114 1 + G A PRAD 49239099 + 49239079 49239119 41 CTCCACCCAGGAACATTATACATGGCAGTGATTCTGTGGAG CTCCACCCAGGAACATTATACATGGCAGTGATTCTATGGAG < 41bp 1 0.409174602165703 1 0.10829570889473 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239099 chr17:49239114 nonsynonymous SNV 0.994 1 36 hm5C_associated_SNPs_31599 0 0 1 0 1 Ribosome 1 0.500231643921039 1 0.999536712157922 hm5C_site_31679 DeepMRMD:1;iRNA_m5C:0.999536712157922 31680 chr17 49239114 49239114 1 + G A PRAD 49239112 + 49239092 49239132 41 CATTATACATGGCAGTGATTCTGTGGAGAGTGCAGAGAAGG CATTATACATGGCAGTGATTCTATGGAGAGTGCAGAGAAGG < 41bp 1 0.31651587645818 1 0.648480474948883 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239112 chr17:49239114 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_31600 0 0 1 0 1 Ribosome 1 0.500231643627619 0.703039050102234 0.999536712744762 hm5C_site_31680 DeepMRMD:0.703039050102234;iRNA_m5C:0.999536712744762 31681 chr17 49239114 49239114 1 + G A PRAD 49239124 + 49239104 49239144 41 CAGTGATTCTGTGGAGAGTGCAGAGAAGGAGATCGGCTTGT CAGTGATTCTATGGAGAGTGCAGAGAAGGAGATCGGCTTGT < 41bp 1 0.430855354941756 1 0.383130490779877 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239124 chr17:49239114 nonsynonymous SNV 0.994 1 11 hm5C_associated_SNPs_31601 0 0 1 0 1 Ribosome 1 0.500231638203926 1 0.999536723592149 hm5C_site_31681 DeepMRMD:1;iRNA_m5C:0.999536723592149 31682 chr1 114450813 114450813 1 + G A PRAD 114450803 + 114450783 114450823 41 CGAAAACACCCACAACATAACATAAAGATTGGTGAGTTGTT CGAAAACACCCACAACATAACATAAAGATTAGTGAGTTGTT < 41bp 1 0.35154468354318 1 0.101184576749802 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114450803 chr1:114450813 nonsynonymous SNV 0.992 4 31 hm5C_associated_SNPs_31602 0 0 0 0 1 chromatin 1 0.500223564411345 1 0.99955287117731 hm5C_site_31682 DeepMRMD:1;iRNA_m5C:0.99955287117731 31683 chr17 43311099 43311099 1 + G A PRAD 43311084 + 43311064 43311104 41 CTCGAGTACCTGGCCTTTGCCCAGTGCTCTGTCACGTAAGC CTCGAGTACCTGGCCTTTGCCCAGTGCTCTGTCACATAAGC < 41bp 1 0.247955884489114 1 0.39880558848381 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FMNL1 ENSG00000184922 splicing Human protein_coding chr17:43311084 chr17:43311099 . 0.919 0 36 hm5C_associated_SNPs_31604 0 0 1 0 1 chromatin 1 0.500234328894016 1 0.999531342211968 hm5C_site_31683 DeepMRMD:1;iRNA_m5C:0.999531342211968 31684 chr3 9776015 9776015 1 + A G PRAD 9776023 + 9776003 9776043 41 AGCACAAGAAAAAGGGGCGCCAGTCACGCCCAGCCAACAAG AGCACAAGAAAAGGGGGCGCCAGTCACGCCCAGCCAACAAG < 41bp 1 0.170801282784149 1 0.23167672753334 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9776023 chr3:9776015 nonsynonymous SNV 0.999 3 13 hm5C_associated_SNPs_31605 0 0 0 0 0 Nucleus 1 0.50023164391752 1 0.999536712164959 hm5C_site_31684 DeepMRMD:1;iRNA_m5C:0.999536712164959 31685 chr11 33564307 33564307 1 + G A PRAD 33564290 + 33564270 33564310 41 GCAGATCAAAGCTGGGGTGCCTGGAAGAGTGCACAATGGGG GCAGATCAAAGCTGGGGTGCCTGGAAGAGTGCACAATAGGG < 41bp 1 0.697057312098834 1 0.62751042842865 experiment 0.605885375802331 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33564290 chr11:33564307 nonsynonymous SNV 0.002 0 38 hm5C_associated_SNPs_31606 0 0 0 0 0 exosome 1 0.500231621648779 0.7449791431427 0.999536756702441 hm5C_site_31685 DeepMRMD:0.7449791431427;iRNA_m5C:0.999536756702441 31686 chr7 70252229 70252229 1 + C A PRAD 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTCGGCCACAAGGATGGCCCAAGTGTGCAGAACTTTAGCA < 41bp 1 0.275464930126613 1 0.284631431102753 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252229 synonymous SNV . 0 22 hm5C_associated_SNPs_31607 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31686 DeepMRMD:1;iRNA_m5C:0.999536712157815 31687 chr11 68822730 68822730 1 + C A PRAD 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTAACGCGCTGCTCCCTGGGA < 41bp 1 0.38432590873825 1 0.0987248122692108 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822730 stopgain 0.070 0 24 hm5C_associated_SNPs_31608 0 0 0 0 2 chromatin 1 0.50023164392082 1 0.99953671215836 hm5C_site_31687 DeepMRMD:1;iRNA_m5C:0.99953671215836 31688 chr16 72134479 72134479 1 + A C PRAD 72134463 + 72134443 72134483 41 GTGCACAATCTGGTGCCTCCCTTTCTGGATGGGCGCATTGT GTGCACAATCTGGTGCCTCCCTTTCTGGATGGGCGCCTTGT < 41bp 1 0.0997167846264716 1 0.0341174006462097 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72134463 chr16:72134479 nonsynonymous SNV 0.999 1 37 hm5C_associated_SNPs_31609 0 0 1 0 0 Cytosol 1 0.500231643865174 1 0.999536712269652 hm5C_site_31688 DeepMRMD:1;iRNA_m5C:0.999536712269652 31689 chr19 10812880 10812880 1 + A G PRAD 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAGTGAGA < 41bp 1 0.203423366598749 1 0.0628441274166107 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812880 nonsynonymous SNV 0.344 0 36 hm5C_associated_SNPs_31610 0 0 1 0 2 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_31689 DeepMRMD:1;iRNA_m5C:0.999536712157818 31690 chr19 45805762 45805762 1 + C T PRAD 45805754 + 45805734 45805774 41 AGCTCTGCGCCAGGCCACAGCAGCCGCCCGCTGCCGCTGCC AGCTCTGCGCCAGGCCACAGCAGCCGCCTGCTGCCGCTGCC < 41bp 1 0.589453735702204 1 0.781957745552063 experiment 0.821092528595592 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45805754 chr19:45805762 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_31611 0 0 0 0 0 Nucleus 1 0.500231643921095 0.436084508895874 0.99953671215781 hm5C_site_31690 DeepMRMD:0.436084508895874;iRNA_m5C:0.99953671215781 31691 chr19 45805762 45805762 1 + C T PRAD 45805757 + 45805737 45805777 41 TCTGCGCCAGGCCACAGCAGCCGCCCGCTGCCGCTGCCGCC TCTGCGCCAGGCCACAGCAGCCGCCTGCTGCCGCTGCCGCC < 41bp 1 0.346020177019169 1 0.303601771593094 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45805757 chr19:45805762 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_31612 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31691 DeepMRMD:1;iRNA_m5C:0.999536712157815 31692 chr19 10897283 10897283 1 + G A PRAD 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG GGGAGTCGCTGCCGGCCCTACGTAACAAACTACAGAGCCAG < 41bp 1 0.282248753483155 1 0.200149118900299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897283 nonsynonymous SNV 0.924 1 25 hm5C_associated_SNPs_31613 0 0 1 0 2 Nucleus 1 0.500231643921084 1 0.999536712157831 hm5C_site_31692 DeepMRMD:1;iRNA_m5C:0.999536712157831 31693 chr3 47361170 47361170 1 + C T PRAD 47361152 + 47361132 47361172 41 TTTGCCCACAGATTGGGGACCACAAATTCAGTGCCCACCGG TTTGCCCACAGATTGGGGACCACAAATTCAGTGCCCACTGG < 41bp 1 0.491815404006302 1 0.198470503091812 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47361152 chr3:47361170 nonsynonymous SNV 0.999 4 39 hm5C_associated_SNPs_31614 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31693 DeepMRMD:1;iRNA_m5C:0.999536712157815 31694 chr5 145641086 145641086 1 + G T PRAD 145641091 + 145641071 145641111 41 AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAA AGGTTGCTTTTAAGGTTGACCCAGAAGCAGCCCTAATCCAA < 41bp 1 0.399296491742642 1 0.403691381216049 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641091 chr5:145641086 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_31615 0 0 1 0 1 Nucleus 1 0.500231172047605 1 0.999537655904791 hm5C_site_31694 DeepMRMD:1;iRNA_m5C:0.999537655904791 31695 chr14 35592592 35592592 1 + T C PRAD 35592593 + 35592573 35592613 41 ACCAGCAGAGGTTGTTTTCTCTTAAAACAATGTCTCCACAG ACCAGCAGAGGTTGTTTTCCCTTAAAACAATGTCTCCACAG < 41bp 1 0.593617256190708 1 0.345803499221802 experiment 0.812765487618583 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KIAA0391 ENSG00000100890;ENSG00000258790 CDS Human other chr14:35592593 chr14:35592592 synonymous SNV . 0 20 hm5C_associated_SNPs_31616 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643924079 1 0.999536712151842 hm5C_site_31695 DeepMRMD:1;iRNA_m5C:0.999536712151842 31696 chr12 14927441 14927441 1 + G A PRAD 14927458 + 14927438 14927478 41 CGAGCAAAGGCCAAATCCCGCTCCTCCCGCGCGGGCCTGCA CGAACAAAGGCCAAATCCCGCTCCTCCCGCGCGGGCCTGCA < 41bp 1 0.587546323347155 1 0.264164924621582 experiment 0.824907353305691 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control H2AFJ ENSG00000246705 CDS Human protein_coding chr12:14927458 chr12:14927441 nonsynonymous SNV 0.940 1 4 hm5C_associated_SNPs_31617 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31696 DeepMRMD:1;iRNA_m5C:0.999536712157815 31697 chr13 113729393 113729393 1 + C T PRAD 113729386 + 113729366 113729406 41 AACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA AACAAGCACTACGCGGTAGACTCCATCTGCCCAAAGTGCCA < 41bp 1 0.673765202102781 1 0.906654357910156 experiment 0.652469595794439 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113729386 chr13:113729393 nonsynonymous SNV 0.567 2 28 hm5C_associated_SNPs_31618 0 0 1 0 1 Cytosol 1 0.500231644135016 0.186691284179688 0.999536711729968 hm5C_site_31697 DeepMRMD:0.186691284179688;iRNA_m5C:0.999536711729968 31698 chr14 56079014 56079014 1 + A G PRAD 56078994 + 56078974 56079014 41 GGAAACCTCCATGAATCCGACTCTGAGAGTGTACCTCGAGA GGAAACCTCCATGAATCCGACTCTGAGAGTGTACCTCGAGG < 41bp 1 0.245706468763544 1 0.0898808836936951 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56078994 chr14:56079014 nonsynonymous SNV 0.998 4 41 hm5C_associated_SNPs_31619 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31698 DeepMRMD:1;iRNA_m5C:0.999536712157815 31699 chr19 41510021 41510021 1 + C A PRAD 41510016 + 41509996 41510036 41 CTTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT CTTGTGGACAAGGCTGAGGCCTTCTATGGCCGGGGAAAAAT < 41bp 1 0.237137217181158 1 0.182062566280365 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510016 chr19:41510021 nonsynonymous SNV 0.786 3 26 hm5C_associated_SNPs_31620 0 0 0 0 1 Nucleus 1 0.500231643920531 1 0.999536712158938 hm5C_site_31699 DeepMRMD:1;iRNA_m5C:0.999536712158938 31700 chr2 109365426 109365426 1 + A G PRAD 109365446 + 109365426 109365466 41 ATTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGCATT GTTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGCATT < 41bp 1 0.368457219804649 1 0.139296352863312 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109365446 chr2:109365426 nonsynonymous SNV 0.877 0 1 hm5C_associated_SNPs_31621 0 0 1 0 1 Nucleus 1 0.500231694970478 1 0.999536610059044 hm5C_site_31700 DeepMRMD:1;iRNA_m5C:0.999536610059044 31701 chr11 71946489 71946489 1 + C T PRAD 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGTTCTACGG < 41bp 1 0.392425490728133 1 0.0531098544597626 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946489 nonsynonymous SNV 0.997 3 34 hm5C_associated_SNPs_31622 0 0 1 0 1 Cytosol 1 0.500230545366308 1 0.999538909267385 hm5C_site_31701 DeepMRMD:1;iRNA_m5C:0.999538909267385 31702 chr11 71946489 71946489 1 + C T PRAD 71946478 + 71946458 71946498 41 GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG GCCCACGGAGCGCCTGGGCACCCGTGAGCGGTTCTACGGTG < 41bp 1 0.389750943605497 1 0.0867576003074646 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946478 chr11:71946489 nonsynonymous SNV 0.997 3 32 hm5C_associated_SNPs_31623 0 0 1 0 1 Cytosol 1 0.500231643920238 1 0.999536712159523 hm5C_site_31702 DeepMRMD:1;iRNA_m5C:0.999536712159523 31703 chr11 71946489 71946489 1 + C T PRAD 71946479 + 71946459 71946499 41 CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG CCCACGGAGCGCCTGGGCACCCGTGAGCGGTTCTACGGTGG < 41bp 1 0.159306661126104 1 0.452099949121475 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946479 chr11:71946489 nonsynonymous SNV 0.997 3 31 hm5C_associated_SNPs_31624 0 0 1 0 1 Cytosol 1 0.500231590388613 1 0.999536819222775 hm5C_site_31703 DeepMRMD:1;iRNA_m5C:0.999536819222775 31704 chr3 23960791 23960791 1 + C T PRAD 23960787 + 23960767 23960807 41 TGAGGTTATCCTCATTGATCCATTCCATAAAGCTATCAGAA TGAGGTTATCCTCATTGATCCATTTCATAAAGCTATCAGAA < 41bp 1 0.0230550495382297 1 0.0483014583587646 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23960787 chr3:23960791 synonymous SNV . 0 25 hm5C_associated_SNPs_31626 0 0 0 0 1 Cytosol 1 0.500167472000446 1 0.999665055999107 hm5C_site_31704 DeepMRMD:1;iRNA_m5C:0.999665055999107 31705 chr1 113238156 113238156 1 + C T PRAD 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGTCC < 41bp 1 0.0461662823291348 1 0.0597780644893646 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238156 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_31627 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31705 DeepMRMD:1;iRNA_m5C:0.999536712157815 31706 chr1 113238156 113238156 1 + C T PRAD 113238149 + 113238129 113238169 41 TTCCTAGCTCCATCTACCGCCTCCTGGCCCCCAGCAGGGAC TTCCTAGCTCCATCTACCGCCTCCTGGTCCCCAGCAGGGAC < 41bp 1 0.283665983335751 1 0.190623611211777 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238149 chr1:113238156 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_31628 0 0 1 0 1 Cytosol 1 0.500231631136339 1 0.999536737727321 hm5C_site_31706 DeepMRMD:1;iRNA_m5C:0.999536737727321 31707 chr16 31122508 31122508 1 + C T PRAD 31122511 + 31122491 31122531 41 CCTATGCCACTGGACTACATCCTGCCGGAGCTGCTCAAGAA CCTATGCCACTGGACTATATCCTGCCGGAGCTGCTCAAGAA < 41bp 1 0.196627495566618 1 0.226367205381393 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BCKDK ENSG00000103507 CDS Human protein_coding chr16:31122511 chr16:31122508 synonymous SNV . 0 18 hm5C_associated_SNPs_31629 0 0 1 0 2 Ribosome 1 0.500231635335892 1 0.999536729328216 hm5C_site_31707 DeepMRMD:1;iRNA_m5C:0.999536729328216 31708 chr17 7160288 7160288 1 + G A PRAD 7160303 + 7160283 7160323 41 ACCCTGGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCT ACCCTAGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCT < 41bp 1 0.452346413635655 1 0.290283381938934 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160303 chr17:7160288 synonymous SNV . 0 6 hm5C_associated_SNPs_31630 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31708 DeepMRMD:1;iRNA_m5C:0.999536712157815 31709 chr9 33313653 33313653 1 + C T PRAD 33313662 + 33313642 33313682 41 GTCTTTACAGGCACACAGTTCGCTGTGGTCAGGCTGTCTCA GTCTTTACAGGTACACAGTTCGCTGTGGTCAGGCTGTCTCA < 41bp 1 0.379949489798871 1 0.275588244199753 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33313662 chr9:33313653 nonsynonymous SNV 0.984 4 12 hm5C_associated_SNPs_31632 0 0 1 0 1 Nucleus 1 0.500236639748998 1 0.999526720502004 hm5C_site_31709 DeepMRMD:1;iRNA_m5C:0.999526720502004 31710 chr1 57161715 57161715 1 + A G PRAD 57161696 + 57161676 57161716 41 CCCTCCCATTTGATGATGAGCATGTACCTACGTTATTTAAG CCCTCCCATTTGATGATGAGCATGTACCTACGTTATTTAGG < 41bp 1 0.15804066685602 1 0.0310839712619781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57161696 chr1:57161715 nonsynonymous SNV 0.992 1 40 hm5C_associated_SNPs_31633 0 0 1 0 0 Endoplasmic reticulum 1 0.500231640215336 1 0.999536719569328 hm5C_site_31710 DeepMRMD:1;iRNA_m5C:0.999536719569328 31711 chr2 220350132 220350132 1 + A G PRAD 220350113 + 220350093 220350133 41 CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTGT < 41bp 1 0.434337601182353 1 0.62467086315155 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220350113 chr2:220350132 synonymous SNV . 0 40 hm5C_associated_SNPs_31634 0 0 0 0 2 Nucleus 1 0.500231643921092 0.7506582736969 0.999536712157815 hm5C_site_31711 DeepMRMD:0.7506582736969;iRNA_m5C:0.999536712157815 31712 chr3 182586927 182586927 1 + C T PRAD 182586934 + 182586914 182586954 41 GAGTGTAATTGTTCAGGCACCTTCAGGTAACCAATCTAAAC GAGTGTAATTGTTTAGGCACCTTCAGGTAACCAATCTAAAC < 41bp 1 0.307907545105719 1 0.115853518247604 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182586934 chr3:182586927 stopgain 1.000 1 14 hm5C_associated_SNPs_31635 0 0 1 0 2 Endoplasmic reticulum 1 0.500231525000752 1 0.999536949998496 hm5C_site_31712 DeepMRMD:1;iRNA_m5C:0.999536949998496 31713 chrX 155252727 155252727 1 + T C PRAD 155252735 + 155252715 155252755 41 GGTGCCTGAGATTGATGTTCCATCCTACCTGCCTGACCTGC GGTGCCTGAGATCGATGTTCCATCCTACCTGCCTGACCTGC < 41bp 1 0.0989712994898928 1 0.271095454692841 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASIR1;DDX11L16 ENSG00000182484;ENSG00000270726 ncRNA_exonic Human other chrX:155252735 chrX:155252727 . . 0 13 hm5C_associated_SNPs_31636 0 0 0 0 1 unknown 1 0.500231643921021 1 0.999536712157959 hm5C_site_31713 DeepMRMD:1;iRNA_m5C:0.999536712157959 31714 chr16 3014524 3014524 1 + G A PRAD 3014531 + 3014511 3014551 41 GGTTGAGAGCGATGGGGACACAAGCCCTGCAGGGCTTCCTC GGTTGAGAGCGATAGGGACACAAGCCCTGCAGGGCTTCCTC < 41bp 1 0.544447675706318 1 0.399613797664642 experiment 0.911104648587365 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN2 ENSG00000131650 CDS Human protein_coding chr16:3014531 chr16:3014524 nonsynonymous SNV 0.418 1 14 hm5C_associated_SNPs_31637 0 0 0 0 1 chromatin 1 0.500231643921534 1 0.999536712156932 hm5C_site_31714 DeepMRMD:1;iRNA_m5C:0.999536712156932 31715 chr3 50255182 50255182 1 + C T PRAD 50255191 + 50255171 50255211 41 AACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCT AACTTCAGCCATGTGGAGATCGTGAAGGAGAAGGTGCAGCT < 41bp 1 0.69435053782613 1 0.573111057281494 experiment 0.611298924347741 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255191 chr3:50255182 . . 0 12 hm5C_associated_SNPs_31639 0 0 0 0 2 exosome 1 0.500231642479803 0.853777885437012 0.999536715040394 hm5C_site_31715 DeepMRMD:0.853777885437012;iRNA_m5C:0.999536715040394 31716 chr1 44446882 44446882 1 + T A PRAD 44446876 + 44446856 44446896 41 GCTGGAGCGCGTCTGCAAGGCTGTGCTCCTTCTCTGCCTGC GCTGGAGCGCGTCTGCAAGGCTGTGCACCTTCTCTGCCTGC < 41bp 1 0.519632707266103 1 0.326735615730286 experiment 0.960734585467795 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control B4GALT2 ENSG00000117411 CDS Human protein_coding chr1:44446876 chr1:44446882 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_31640 0 0 1 0 0 Cytosol 1 0.500231632690626 1 0.999536734618748 hm5C_site_31716 DeepMRMD:1;iRNA_m5C:0.999536734618748 31717 chr1 16262301 16262301 1 + A G PRAD 16262304 + 16262284 16262324 41 GTACCGACTGCACCCCTATACTGTGCCACGGGATGTGAGGA GTACCGACTGCACCCCTGTACTGTGCCACGGGATGTGAGGA < 41bp 1 0.13261905888875 1 0.169270902872086 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16262304 chr1:16262301 nonsynonymous SNV 0.947 3 18 hm5C_associated_SNPs_31641 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31717 DeepMRMD:1;iRNA_m5C:0.999536712157815 31718 chr9 34648844 34648844 1 + G A PRAD 34648834 + 34648814 34648854 41 CATGGCCCTACCAGACACTGCTGCTGCCCCGTCGGCATGTG CATGGCCCTACCAGACACTGCTGCTGCCCCATCGGCATGTG < 41bp 1 0.374913913004936 1 0.0579164624214172 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALT ENSG00000213930 CDS Human protein_coding chr9:34648834 chr9:34648844 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_31642 0 0 0 0 2 Cytosol 1 0.500231643921081 1 0.999536712157838 hm5C_site_31718 DeepMRMD:1;iRNA_m5C:0.999536712157838 31719 chr1 201185695 201185695 1 + G A PRAD 201185676 + 201185656 201185696 41 CCCCCAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGT CCCCCAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACAT < 41bp 1 0.384733475221392 1 0.140350818634033 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185676 chr1:201185695 nonsynonymous SNV 0.158 0 40 hm5C_associated_SNPs_31643 0 0 0 0 0 exosome 1 0.500231643921099 1 0.999536712157802 hm5C_site_31719 DeepMRMD:1;iRNA_m5C:0.999536712157802 31720 chr1 201185695 201185695 1 + G A PRAD 201185677 + 201185657 201185697 41 CCCCAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGTG CCCCAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACATG < 41bp 1 0.132632042466346 1 0.074339359998703 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185677 chr1:201185695 nonsynonymous SNV 0.158 0 39 hm5C_associated_SNPs_31644 0 0 0 0 0 exosome 1 0.500231643287566 1 0.999536713424867 hm5C_site_31720 DeepMRMD:1;iRNA_m5C:0.999536713424867 31721 chrX 73046745 73046745 1 + C T PRAD 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AAAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA < 41bp 1 0.547861144490483 1 0.630633175373077 experiment 0.904277711019035 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046745 . . 0 2 hm5C_associated_SNPs_31645 0 0 1 1 0 unknown 1 0.500231640666169 0.738733649253846 0.999536718667662 hm5C_site_31721 DeepMRMD:0.738733649253846;iRNA_m5C:0.999536718667662 31722 chrX 73046745 73046745 1 + C T PRAD 73046754 - 73046734 73046774 41 GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA GTTGGATGGAAGTCTCAAGGCTTGAGTTAAAAGTCTTAAGA < 41bp 1 0.554165003067369 1 0.236251682043076 experiment 0.891669993865262 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046754 chrX:73046745 . . 0 30 hm5C_associated_SNPs_31646 0 0 1 1 0 unknown 1 0.500231643921273 1 0.999536712157455 hm5C_site_31722 DeepMRMD:1;iRNA_m5C:0.999536712157455 31723 chrX 73046744 73046744 1 + T C PRAD 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGGAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA < 41bp 1 0.589326307127254 1 0.67941677570343 experiment 0.821347385745491 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046744 . . 0 3 hm5C_associated_SNPs_31647 0 0 1 1 0 unknown 1 0.500231640485987 0.64116644859314 0.999536719028025 hm5C_site_31723 DeepMRMD:0.64116644859314;iRNA_m5C:0.999536719028025 31724 chrX 73046744 73046744 1 + T C PRAD 73046754 - 73046734 73046774 41 GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA GTTGGATGGAAGTCTCAAGGCTTGAGTTAGGAGTCTTAAGA < 41bp 1 0.507329178498888 1 0.167037963867188 experiment 0.985341643002224 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046754 chrX:73046744 . . 0 31 hm5C_associated_SNPs_31648 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_31724 DeepMRMD:1;iRNA_m5C:0.999536712157815 31725 chr3 10191575 10191575 1 + G T PRAD 10191581 + 10191561 10191601 41 ACGAAGATCTGGAAGACCACCCAAATGTGCAGAAAGACCTG ACGAAGATCTGGAATACCACCCAAATGTGCAGAAAGACCTG < 41bp 1 0.501458884113017 1 0.202087849378586 experiment 0.997082231773966 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VHL ENSG00000134086 CDS Human protein_coding chr3:10191581 chr3:10191575 nonsynonymous SNV 0.999 5 15 hm5C_associated_SNPs_31650 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_31725 DeepMRMD:1;iRNA_m5C:0.999536712157817 31726 chr18 74620343 74620343 1 + C T PRAD 74620335 + 74620315 74620355 41 AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATGC AGCCTCGATAGATGACAGCACTGTAGACTAGCAGAGCATGC < 41bp 1 0.437675565083089 1 0.125077873468399 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74620335 chr18:74620343 stopgain 0.858 1 29 hm5C_associated_SNPs_31651 0 0 1 0 1 Cytosol 1 0.500224660076737 1 0.999550679846525 hm5C_site_31726 DeepMRMD:1;iRNA_m5C:0.999550679846525 31727 chr7 101916637 101916637 1 + G T PRAD 101916646 + 101916626 101916666 41 TTTGGCCACAGGACGCTGTGCAGAGCTGCAAGTCCGTATCA TTTGGCCACAGTACGCTGTGCAGAGCTGCAAGTCCGTATCA < 41bp 1 0.28063846245505 1 0.18296605348587 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101916646 chr7:101916637 nonsynonymous SNV 0.844 0 12 hm5C_associated_SNPs_31653 0 0 0 0 1 Exosome 1 0.500233760168952 1 0.999532479662096 hm5C_site_31727 DeepMRMD:1;iRNA_m5C:0.999532479662096 31728 chr6 158093924 158093924 1 + G A PRAD 158093921 + 158093901 158093941 41 CACTGGGCCCGCCCACACCGCCCGCCTCCATGCCCAACCTC CACTGGGCCCGCCCACACCGCCCACCTCCATGCCCAACCTC < 41bp 1 0.0708782045817732 1 0.0342886447906494 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZDHHC14 ENSG00000175048 CDS Human protein_coding chr6:158093921 chr6:158093924 nonsynonymous SNV 0.606 0 24 hm5C_associated_SNPs_31654 0 0 0 0 0 chromatin 1 0.500231643869049 1 0.999536712261902 hm5C_site_31728 DeepMRMD:1;iRNA_m5C:0.999536712261902 31729 chr7 129064719 129064719 1 + G A PRAD 129064717 + 129064697 129064737 41 TTCACCTTTGATCACTAGGGCCGCCTGCTGAACCTTAGCTG TTCACCTTTGATCACTAGGGCCACCTGCTGAACCTTAGCTG < 41bp 1 0.0451540862887456 1 0.18609282374382 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064717 chr7:129064719 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_31656 0 0 0 0 2 chromatin 1 0.50023164392113 1 0.999536712157739 hm5C_site_31729 DeepMRMD:1;iRNA_m5C:0.999536712157739 31730 chr4 79396694 79396694 1 + C T PRAD 79396708 + 79396688 79396728 41 AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCTG AGGCACTGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCTG < 41bp 1 0.381871158207247 1 0.899659156799316 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79396708 chr4:79396694 synonymous SNV . 0 7 hm5C_associated_SNPs_31657 0 0 0 0 1 Nucleus 1 0.500231643921092 0.200681686401368 0.999536712157815 hm5C_site_31730 DeepMRMD:0.200681686401368;iRNA_m5C:0.999536712157815 31731 chr17 17698444 17698444 1 + T C PRAD 17698433 + 17698413 17698453 41 TGCTCCAGACCCCACTACAGCAGCTTTTGACTGTTTCCCGG TGCTCCAGACCCCACTACAGCAGCTTTTGACCGTTTCCCGG < 41bp 1 0.344580285696753 1 0.347986042499542 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17698433 chr17:17698444 nonsynonymous SNV 0.982 4 32 hm5C_associated_SNPs_31658 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157813 hm5C_site_31731 DeepMRMD:1;iRNA_m5C:0.999536712157813 31732 chr19 803588 803588 1 + T C PRAD 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTC < 41bp 1 0.459783628663553 1 0.294523358345032 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803588 nonsynonymous SNV 0.012 2 41 hm5C_associated_SNPs_31659 0 0 1 0 2 Cytosol 1 0.500231643919433 1 0.999536712161134 hm5C_site_31732 DeepMRMD:1;iRNA_m5C:0.999536712161134 31733 chr19 40711065 40711065 1 + C T PRAD 40711074 + 40711054 40711094 41 CGGCCAGATTTCGGTAGCATCTTGAAGCGGCTTGAAGTCAT CGGCCAGATTTTGGTAGCATCTTGAAGCGGCTTGAAGTCAT < 41bp 1 0.473371313606016 1 0.79077535867691 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40711074 chr19:40711065 synonymous SNV . 0 12 hm5C_associated_SNPs_31660 0 0 0 0 1 Endoplasmic reticulum 1 0.500231373014312 0.41844928264618 0.999537253971377 hm5C_site_31733 DeepMRMD:0.41844928264618;iRNA_m5C:0.999537253971377 31734 chr11 68822732 68822732 1 + G A PRAD 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTACCACGCTGCTCCCTGGGA < 41bp 1 0.367713478051903 1 0.0693256855010986 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822732 nonsynonymous SNV 0.049 5 26 hm5C_associated_SNPs_31661 0 0 0 0 2 chromatin 1 0.500231643938643 1 0.999536712122713 hm5C_site_31734 DeepMRMD:1;iRNA_m5C:0.999536712122713 31735 chr19 10561280 10561280 1 + C T PRAD 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GTGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA < 41bp 1 0.0356908364141927 1 0.191539198160172 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561280 nonsynonymous SNV 0.539 1 2 hm5C_associated_SNPs_31662 0 0 0 0 2 chromatin 1 0.500231643919638 1 0.999536712160723 hm5C_site_31735 DeepMRMD:1;iRNA_m5C:0.999536712160723 31736 chr7 148873589 148873589 1 + T C PRAD 148873590 + 148873570 148873610 41 TTCAACATCAGATATTCTGTCTTGGATTAAACAAGAAGAAG TTCAACATCAGATATTCTGCCTTGGATTAAACAAGAAGAAG < 41bp 1 0.281164258285507 1 0.0494051873683929 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148873590 chr7:148873589 nonsynonymous SNV 0.999 3 20 hm5C_associated_SNPs_31663 0 0 1 0 2 chromatin 1 0.500231643921591 1 0.999536712156818 hm5C_site_31736 DeepMRMD:1;iRNA_m5C:0.999536712156818 31737 chr1 24083516 24083516 1 + G T PRAD 24083522 + 24083502 24083542 41 TTAACCCCAGCCCTGAGGAGCCGGCCTATGATGGCCCAAGC TTAACCCCAGCCCTTAGGAGCCGGCCTATGATGGCCCAAGC < 41bp 1 0.22771809075035 1 0.631844282150269 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ELOA ENSG00000011007 CDS Human protein_coding chr1:24083522 chr1:24083516 stopgain 0.138 0 15 hm5C_associated_SNPs_31665 0 0 1 0 1 unknown 1 0.500231643921092 0.736311435699462 0.999536712157815 hm5C_site_31737 DeepMRMD:0.736311435699462;iRNA_m5C:0.999536712157815 31738 chr2 162091959 162091959 1 + T C PRAD 162091953 + 162091933 162091973 41 AGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCATTA AGTATGTGAATTCTGTCAAGCAGTTTCCCCACCATCCATTA < 41bp 1 0.432936003257085 1 0.0625622570514679 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANK ENSG00000136560 CDS Human protein_coding chr2:162091953 chr2:162091959 nonsynonymous SNV 0.999 2 27 hm5C_associated_SNPs_31666 0 0 1 0 0 Cytosol 1 0.500231643881574 1 0.999536712236851 hm5C_site_31738 DeepMRMD:1;iRNA_m5C:0.999536712236851 31739 chr1 109772145 109772145 1 + G A PRAD 109772129 + 109772109 109772149 41 GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGAG GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCAAGAG < 41bp 1 0.547216587583377 1 0.362443327903748 experiment 0.905566824833246 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772129 chr1:109772145 nonsynonymous SNV 0.968 2 37 hm5C_associated_SNPs_31668 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31739 DeepMRMD:1;iRNA_m5C:0.999536712157815 31740 chr13 111156530 111156530 1 + G T PRAD 111156524 + 111156504 111156544 41 GGGCTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTG GGGCTCCAGGGAAAGCTGGGCCCCAATGAAGAGGTGGTGTG < 41bp 1 0.130103043194035 1 0.149550408124924 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156524 chr13:111156530 stopgain 0.997 1 27 hm5C_associated_SNPs_31669 0 0 0 0 2 Cytosol 1 0.500231643357944 1 0.999536713284111 hm5C_site_31740 DeepMRMD:1;iRNA_m5C:0.999536713284111 31741 chr13 111156530 111156530 1 + G T PRAD 111156527 + 111156507 111156547 41 CTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTGTCT CTCCAGGGAAAGCTGGGCCCCAATGAAGAGGTGGTGTGTCT < 41bp 1 0.0716540303865096 1 0.12142813205719 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156527 chr13:111156530 stopgain 0.997 1 24 hm5C_associated_SNPs_31670 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31741 DeepMRMD:1;iRNA_m5C:0.999536712157815 31742 chr7 142459851 142459851 1 + G A PRAD 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTAGCT < 41bp 1 0.634459258178086 1 0.172712564468384 experiment 0.731081483643828 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459851 nonsynonymous SNV 0.475 5 38 hm5C_associated_SNPs_31671 0 0 0 0 1 Cytosol 1 0.500231643921086 1 0.999536712157828 hm5C_site_31742 DeepMRMD:1;iRNA_m5C:0.999536712157828 31743 chr7 142459851 142459851 1 + G A PRAD 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACGAAGTGCCTCATCTCTAGCTGGGGCAA < 41bp 1 0.428374873928773 1 0.0359977781772614 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459851 nonsynonymous SNV 0.475 5 31 hm5C_associated_SNPs_31672 0 0 0 0 1 Cytosol 1 0.500231643920834 1 0.999536712158331 hm5C_site_31743 DeepMRMD:1;iRNA_m5C:0.999536712158331 31744 chr7 142459851 142459851 1 + G A PRAD 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAGTGCCTCATCTCTAGCTGGGGCAAC < 41bp 1 0.472762527954721 1 0.0370602607727051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459851 nonsynonymous SNV 0.475 5 30 hm5C_associated_SNPs_31673 0 0 0 0 1 Cytosol 1 0.500231641872566 1 0.999536716254868 hm5C_site_31744 DeepMRMD:1;iRNA_m5C:0.999536716254868 31745 chr7 142459851 142459851 1 + G A PRAD 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAGTGCCTCATCTCTAGCTGGGGCAACAC < 41bp 1 0.478860544624538 1 0.0212027132511139 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459851 nonsynonymous SNV 0.475 5 28 hm5C_associated_SNPs_31674 0 0 0 0 1 Cytosol 1 0.500231662081426 1 0.999536675837148 hm5C_site_31745 DeepMRMD:1;iRNA_m5C:0.999536675837148 31746 chr7 142459851 142459851 1 + G A PRAD 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTCTAGCTGGGGCAACACTGCGAGCTCTGGCGGTGA < 41bp 1 0.299493018705821 1 0.125606834888458 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459851 nonsynonymous SNV 0.475 5 10 hm5C_associated_SNPs_31676 0 0 0 0 1 Cytosol 1 0.500231643930348 1 0.999536712139304 hm5C_site_31746 DeepMRMD:1;iRNA_m5C:0.999536712139304 31747 chr7 142459851 142459851 1 + G A PRAD 142459864 + 142459844 142459884 41 CATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT CATCTCTAGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGT < 41bp 1 0.699837655259237 1 0.461177110671997 experiment 0.600324689481526 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459864 chr7:142459851 nonsynonymous SNV 0.475 5 8 hm5C_associated_SNPs_31677 0 0 0 0 1 Cytosol 1 0.500231643922923 1 0.999536712154154 hm5C_site_31747 DeepMRMD:1;iRNA_m5C:0.999536712154154 31748 chr7 142459851 142459851 1 + G A PRAD 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTCTAGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG < 41bp 1 0.386319508077408 1 0.494054347276688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459851 nonsynonymous SNV 0.475 5 5 hm5C_associated_SNPs_31678 0 0 0 0 1 Cytosol 1 0.500231660765522 1 0.999536678468956 hm5C_site_31748 DeepMRMD:1;iRNA_m5C:0.999536678468956 31749 chr7 142459851 142459851 1 + G A PRAD 142459871 + 142459851 142459891 41 GGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC AGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC < 41bp 1 0.391333349173397 1 0.22246778011322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459871 chr7:142459851 nonsynonymous SNV 0.475 5 1 hm5C_associated_SNPs_31679 0 0 0 0 1 Cytosol 1 0.500232449463404 1 0.999535101073192 hm5C_site_31749 DeepMRMD:1;iRNA_m5C:0.999535101073192 31750 chr7 150773114 150773114 1 + T C PRAD 150773103 + 150773083 150773123 41 CTGTCTCCGCCCCCCAGGTCCGGACCCTCCGTATGCACCTG CTGTCTCCGCCCCCCAGGTCCGGACCCTCCGCATGCACCTG < 41bp 1 0.261647352260614 1 0.186893105506897 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773103 chr7:150773114 synonymous SNV . 0 32 hm5C_associated_SNPs_31680 0 0 1 0 1 Ribosome 1 0.500231643772026 1 0.999536712455947 hm5C_site_31750 DeepMRMD:1;iRNA_m5C:0.999536712455947 31751 chr14 64676752 64676752 1 + G A PRAD 64676732 + 64676712 64676752 41 AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACG AGCAGTACCGGCGGCTGGCCCGGGAGAACCGCACAGACACA < 41bp 1 0.573880290298963 1 0.959205150604248 experiment 0.852239419402075 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64676732 chr14:64676752 synonymous SNV . 0 41 hm5C_associated_SNPs_31681 0 0 0 0 2 Nucleus 1 0.500231643922721 0.0815896987915039 0.999536712154558 hm5C_site_31751 DeepMRMD:0.0815896987915039;iRNA_m5C:0.999536712154558 31752 chr2 209190015 209190015 1 + T G PRAD 209190000 + 209189980 209190020 41 GTTTTTGTTTGTAGAACAAACCAAGACACTGATGTTTTTTG GTTTTTGTTTGTAGAACAAACCAAGACACTGATGTGTTTTG < 41bp 1 0.10896670097976 1 0.179553985595703 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209190000 chr2:209190015 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_31682 0 0 1 0 1 Nucleus 1 0.500415654724542 1 0.999168690550917 hm5C_site_31752 DeepMRMD:1;iRNA_m5C:0.999168690550917 31753 chr15 67073658 67073658 1 + G T PRAD 67073651 + 67073631 67073671 41 CTGGACGCGCCCGGCGGCCGCGCCCTGGTCGTGCGCAAGGT CTGGACGCGCCCGGCGGCCGCGCCCTGTTCGTGCGCAAGGT < 41bp 1 0.440511791696464 1 0.481967628002167 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SMAD6 ENSG00000137834 CDS Human protein_coding chr15:67073651 chr15:67073658 nonsynonymous SNV 0.998 3 28 hm5C_associated_SNPs_31683 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31753 DeepMRMD:1;iRNA_m5C:0.999536712157815 31754 chr7 66489943 66489943 1 + G A PRAD 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAAAGCCTAAATTCCATT < 41bp 1 0.339828082513553 1 0.0981194078922272 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489943 synonymous SNV . 0 26 hm5C_associated_SNPs_31684 0 0 0 0 2 Endoplasmic reticulum 1 0.500093536286703 1 0.999812927426594 hm5C_site_31754 DeepMRMD:1;iRNA_m5C:0.999812927426594 31755 chr12 62777707 62777707 1 + A C PRAD 62777692 + 62777672 62777712 41 TGTCAAGAACTGTTAGCTTTCCTATTAGATGGATTACATGA TGTCAAGAACTGTTAGCTTTCCTATTAGATGGATTCCATGA < 41bp 1 0.0898466441595531 1 0.326505094766617 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient USP15 ENSG00000135655 CDS Human protein_coding chr12:62777692 chr12:62777707 nonsynonymous SNV 0.995 4 36 hm5C_associated_SNPs_31685 0 0 1 0 2 Ribosome 1 0.500231647505981 1 0.999536704988038 hm5C_site_31755 DeepMRMD:1;iRNA_m5C:0.999536704988038 31756 chr16 56659784 56659784 1 + C T PRAD 56659789 + 56659769 56659809 41 CCCCAACTGCTCTTGCGCCACTGGTAAGGGAAGCTCTGCGC CCCCAACTGCTCTTGTGCCACTGGTAAGGGAAGCTCTGCGC < 41bp 1 0.674461862523839 1 0.353311866521835 experiment 0.651076274952322 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56659789 chr16:56659784 synonymous SNV . 0 16 hm5C_associated_SNPs_31686 0 0 1 0 1 Ribosome 1 0.500231607925489 1 0.999536784149021 hm5C_site_31756 DeepMRMD:1;iRNA_m5C:0.999536784149021 31757 chr8 145150822 145150822 1 + G A PRAD 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGCAGGGGGTGCAGGGCTGGCCATGGCTCTGCATTCGGCTG < 41bp 1 0.43696823695928 1 0.419718772172928 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150822 synonymous SNV . 0 13 hm5C_associated_SNPs_31687 0 0 1 0 1 Ribosome 1 0.500231643920408 1 0.999536712159183 hm5C_site_31757 DeepMRMD:1;iRNA_m5C:0.999536712159183 31758 chr17 37676290 37676290 1 + A G PRAD 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTGCA < 41bp 1 0.198131568957481 1 0.15754646062851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676290 synonymous SNV . 0 39 hm5C_associated_SNPs_31688 0 0 1 0 1 Nucleus 1 0.500231644018131 1 0.999536711963738 hm5C_site_31758 DeepMRMD:1;iRNA_m5C:0.999536711963738 31759 chr15 67073650 67073650 1 + G A PRAD 67073651 + 67073631 67073671 41 CTGGACGCGCCCGGCGGCCGCGCCCTGGTCGTGCGCAAGGT CTGGACGCGCCCGGCGGCCACGCCCTGGTCGTGCGCAAGGT < 41bp 1 0.514622064326605 1 0.486501455307007 experiment 0.97075587134679 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SMAD6 ENSG00000137834 CDS Human protein_coding chr15:67073651 chr15:67073650 nonsynonymous SNV 0.996 5 20 hm5C_associated_SNPs_31689 0 0 1 0 0 Cytosol 1 0.500231641712604 1 0.999536716574792 hm5C_site_31759 DeepMRMD:1;iRNA_m5C:0.999536716574792 31760 chr10 106019439 106019439 1 + C G PRAD 106019431 + 106019411 106019451 41 TTCTGGAAAACAGTCAGGGTCAGCTGATCTACGAGTCTGCC TTCTGGAAAACAGTCAGGGTCAGCTGATGTACGAGTCTGCC < 41bp 1 0.546492058543248 1 0.332148283720016 experiment 0.907015882913504 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106019431 chr10:106019439 nonsynonymous SNV 0.481 4 29 hm5C_associated_SNPs_31690 0 0 1 0 0 Ribosome 1 0.500231643921275 1 0.99953671215745 hm5C_site_31760 DeepMRMD:1;iRNA_m5C:0.99953671215745 31761 chr10 127512145 127512145 1 + C G PRAD 127512131 + 127512111 127512151 41 CAGTGTGAGCGGCAACATGGCGTCCAGGTCTAAGCGGCGTG CAGTGTGAGCGGCAACATGGCGTCCAGGTCTAAGGGGCGTG < 41bp 1 0.334197875652848 1 0.163662910461426 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCCIP ENSG00000107949 CDS Human protein_coding chr10:127512131 chr10:127512145 nonsynonymous SNV 0.003 2 35 hm5C_associated_SNPs_31691 0 0 1 0 0 Ribosome 1 0.500231643919198 1 0.999536712161603 hm5C_site_31761 DeepMRMD:1;iRNA_m5C:0.999536712161603 31762 chr2 75081432 75081432 1 + C A PRAD 75081425 + 75081405 75081445 41 TTCCTCCTTTTTCAGGTTGACCAGTATCTCTACCACATGCG TTCCTCCTTTTTCAGGTTGACCAGTATATCTACCACATGCG < 41bp 1 0.0871536433483426 1 0.0739268660545349 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK2 ENSG00000159399 CDS Human protein_coding chr2:75081425 chr2:75081432 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_31692 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31762 DeepMRMD:1;iRNA_m5C:0.999536712157815 31763 chr20 44506572 44506572 1 + A T PRAD 44506564 + 44506544 44506584 41 GCCACTGAAGTCCAAGAAGGCTTTTGGAATCTGTGGAGAGA GCCACTGAAGTCCAAGAAGGCTTTTGGATTCTGTGGAGAGA < 41bp 1 0.0762863144731117 1 0.153068214654922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZSWIM3 ENSG00000132801 CDS Human protein_coding chr20:44506564 chr20:44506572 nonsynonymous SNV 0.002 0 29 hm5C_associated_SNPs_31693 0 0 0 0 0 Cytosol 1 0.500232370401808 1 0.999535259196384 hm5C_site_31763 DeepMRMD:1;iRNA_m5C:0.999535259196384 31764 chr4 114161711 114161711 1 + G A PRAD 114161710 + 114161690 114161730 41 TGGCAACTCTTCTTCTAAACCGGGGAGCTGCTGTGGACTTC TGGCAACTCTTCTTCTAAACCAGGGAGCTGCTGTGGACTTC < 41bp 1 0.626775057754988 1 0.664224803447723 experiment 0.746449884490024 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ANK2 ENSG00000145362 CDS Human protein_coding chr4:114161710 chr4:114161711 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_31694 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644728023 0.671550393104554 0.999536710543955 hm5C_site_31764 DeepMRMD:0.671550393104554;iRNA_m5C:0.999536710543955 31765 chr1 24020353 24020353 1 + T C PRAD 24020369 + 24020349 24020389 41 CCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG CCACCGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG < 41bp 1 0.13394977560315 1 0.469079107046127 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020369 chr1:24020353 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_31695 0 0 1 0 2 Cytosol 1 0.500231643921086 1 0.999536712157828 hm5C_site_31765 DeepMRMD:1;iRNA_m5C:0.999536712157828 31766 chr1 24020353 24020353 1 + T C PRAD 24020370 + 24020350 24020390 41 CACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA CACCGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGA < 41bp 1 0.588124215118248 1 0.40295347571373 experiment 0.823751569763504 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020370 chr1:24020353 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_31696 0 0 1 0 2 Cytosol 1 0.500231643925892 1 0.999536712148215 hm5C_site_31766 DeepMRMD:1;iRNA_m5C:0.999536712148215 31767 chr17 37814071 37814071 1 + C T PRAD 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGTCGTGCTGCGGCTCCGGCACTGGTGGGTG < 41bp 1 0.433603179573278 1 0.241837352514267 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814071 nonsynonymous SNV 0.891 4 13 hm5C_associated_SNPs_31697 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31767 DeepMRMD:1;iRNA_m5C:0.999536712157815 31768 chr11 64137784 64137784 1 + C T PRAD 64137798 + 64137778 64137818 41 AAAATCCGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG AAAATCTGCGAGGGGCGCTTCTCCCTTGACGGGGAGGCCTG < 41bp 1 0.469035257564784 1 0.515236735343933 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137798 chr11:64137784 nonsynonymous SNV 0.994 2 7 hm5C_associated_SNPs_31698 0 0 0 0 3 chromatin 1 0.500231643921092 0.969526529312134 0.999536712157815 hm5C_site_31768 DeepMRMD:0.969526529312134;iRNA_m5C:0.999536712157815 31769 chr5 122161782 122161782 1 + G A PRAD 122161793 + 122161773 122161813 41 GGCAGAAATGGGAAGATGCTCAAATTACTTTGCTCAAAAAA GGCAGAAATAGGAAGATGCTCAAATTACTTTGCTCAAAAAA < 41bp 1 0.33811078867651 1 0.276487290859222 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX2 ENSG00000205302 CDS Human protein_coding chr5:122161793 chr5:122161782 stopgain 1.000 1 10 hm5C_associated_SNPs_31699 0 0 1 0 0 Ribosome 1 0.500231643920966 1 0.999536712158068 hm5C_site_31769 DeepMRMD:1;iRNA_m5C:0.999536712158068 31770 chr15 101169708 101169708 1 + G A PRAD 101169701 + 101169681 101169721 41 CTCTTCACTATGCAGCCATGCATGGCCGGGCCCGCATTGCA CTCTTCACTATGCAGCCATGCATGGCCAGGCCCGCATTGCA < 41bp 1 0.361680141048878 1 0.0549403727054596 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASB7 ENSG00000183475 CDS Human protein_coding chr15:101169701 chr15:101169708 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_31701 0 0 1 0 1 Ribosome 1 0.500231644220077 1 0.999536711559846 hm5C_site_31770 DeepMRMD:1;iRNA_m5C:0.999536711559846 31771 chr17 900393 900393 1 + C G PRAD 900378 + 900358 900398 41 GAGGGTTGCTTGGGCAGCGACTGTCATGGCGGCGGCCGCCC GAGGGTTGCTTGGGCAGCGACTGTCATGGCGGCGGGCGCCC < 41bp 1 0.519417176417593 1 0.382535368204117 experiment 0.961165647164813 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TIMM22 ENSG00000177370 CDS Human protein_coding chr17:900378 chr17:900393 nonsynonymous SNV 0.014 0 36 hm5C_associated_SNPs_31702 0 0 1 0 0 Cytosol 1 0.500231644472744 1 0.999536711054511 hm5C_site_31771 DeepMRMD:1;iRNA_m5C:0.999536711054511 31772 chr19 34263027 34263027 1 + C T PRAD 34263033 + 34263013 34263053 41 TCCGCCAGCGCCGTCGCCGTCTGCTCATCAAGAAAATGCCA TCCGCCAGCGCCGTTGCCGTCTGCTCATCAAGAAAATGCCA < 41bp 1 0.46627262538286 1 0.272497713565826 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHST8 ENSG00000124302 CDS Human protein_coding chr19:34263033 chr19:34263027 nonsynonymous SNV 0.809 3 15 hm5C_associated_SNPs_31703 0 0 0 0 0 exosome 1 0.500231665413936 1 0.999536669172128 hm5C_site_31772 DeepMRMD:1;iRNA_m5C:0.999536669172128 31773 chr3 37367122 37367122 1 + A G PRAD 37367140 + 37367120 37367160 41 CTAGGATTTCTCATTGTCAGCACCGTACAACTAAAGTTAAG CTGGGATTTCTCATTGTCAGCACCGTACAACTAAAGTTAAG < 41bp 1 0.273360705392476 1 0.158168792724609 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367140 chr3:37367122 nonsynonymous SNV 0.984 3 3 hm5C_associated_SNPs_31704 0 0 1 0 0 Cytosol 1 0.500231643921088 1 0.999536712157825 hm5C_site_31773 DeepMRMD:1;iRNA_m5C:0.999536712157825 31774 chr3 37367122 37367122 1 + A G PRAD 37367142 + 37367122 37367162 41 AGGATTTCTCATTGTCAGCACCGTACAACTAAAGTTAAGGA GGGATTTCTCATTGTCAGCACCGTACAACTAAAGTTAAGGA < 41bp 1 0.0512969095769316 1 0.166294187307358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367142 chr3:37367122 nonsynonymous SNV 0.984 3 1 hm5C_associated_SNPs_31705 0 0 1 0 0 Cytosol 1 0.500231643921077 1 0.999536712157845 hm5C_site_31774 DeepMRMD:1;iRNA_m5C:0.999536712157845 31775 chr9 135926319 135926319 1 + T C PRAD 135926303 + 135926283 135926323 41 AGCCACTGGAGGCTGCAGCCCAGACGTGGAGGAGAGTCTGC AGCCACTGGAGGCTGCAGCCCAGACGTGGAGGAGAGCCTGC < 41bp 1 0.537904532125259 1 0.391039133071899 experiment 0.924190935749482 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135926303 chr9:135926319 nonsynonymous SNV 0.093 0 37 hm5C_associated_SNPs_31706 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31775 DeepMRMD:1;iRNA_m5C:0.999536712157815 31776 chr16 2636776 2636776 1 + G A PRAD 2636784 + 2636764 2636804 41 CCCCAGAGGTCAGGCAGCAACATAGAGCAGTACATTCACGA CCCCAGAGGTCAAGCAGCAACATAGAGCAGTACATTCACGA < 41bp 1 0.197577826716951 1 0.156669318675995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDPK1 ENSG00000140992 CDS Human protein_coding chr16:2636784 chr16:2636776 nonsynonymous SNV 0.996 1 13 hm5C_associated_SNPs_31708 0 0 0 0 1 Ribosome 1 0.500231643881842 1 0.999536712236316 hm5C_site_31776 DeepMRMD:1;iRNA_m5C:0.999536712236316 31777 chr7 150773232 150773232 1 + G A PRAD 150773215 + 150773195 150773235 41 CCCCTTCATCCTCATCCTCACAGTGCCGCTCCGCATGGTGG CCCCTTCATCCTCATCCTCACAGTGCCGCTCCGCATGATGG < 41bp 1 0.195154368337772 1 0.0780059397220612 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773215 chr7:150773232 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_31709 0 0 1 0 1 Ribosome 1 0.500231643921133 1 0.999536712157735 hm5C_site_31777 DeepMRMD:1;iRNA_m5C:0.999536712157735 31778 chr7 150773232 150773232 1 + G A PRAD 150773220 + 150773200 150773240 41 TCATCCTCATCCTCACAGTGCCGCTCCGCATGGTGGTGCTC TCATCCTCATCCTCACAGTGCCGCTCCGCATGATGGTGCTC < 41bp 1 0.0502533550566948 1 0.0398400127887726 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773220 chr7:150773232 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_31710 0 0 1 0 1 Ribosome 1 0.500231716835887 1 0.999536566328226 hm5C_site_31778 DeepMRMD:1;iRNA_m5C:0.999536566328226 31779 chr14 60591549 60591549 1 + A G PRAD 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTCTATTAGGATACCCTGCTGTTGGCAAAGGAAAACAAG < 41bp 1 0.184604299620908 1 0.115707397460938 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591549 nonsynonymous SNV 0.997 2 27 hm5C_associated_SNPs_31711 0 0 1 2 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31779 DeepMRMD:1;iRNA_m5C:0.999536712157815 31780 chr20 37144919 37144919 1 + G A PRAD 37144939 + 37144919 37144959 41 GCAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC ACAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC < 41bp 1 0.124098810451316 1 0.142126381397247 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37144939 chr20:37144919 synonymous SNV . 0 1 hm5C_associated_SNPs_31713 0 0 1 0 2 Nucleus 1 0.500231643923496 1 0.999536712153007 hm5C_site_31780 DeepMRMD:1;iRNA_m5C:0.999536712153007 31781 chr6 25551235 25551235 1 + A G PRAD 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCACCGGAAAGATTTCTAT < 41bp 1 0.447361607975078 1 0.375179916620255 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551235 nonsynonymous SNV 0.998 0 29 hm5C_associated_SNPs_31714 0 0 0 0 2 unknown 1 0.500231643921855 1 0.999536712156289 hm5C_site_31781 DeepMRMD:1;iRNA_m5C:0.999536712156289 31782 chr12 27835611 27835611 1 + G T PRAD 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATGTTCGAATGCTACATTACATGACTGTTGTAAGT < 41bp 1 0.202292637077619 1 0.112459033727646 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835611 nonsynonymous SNV 0.991 3 10 hm5C_associated_SNPs_31716 0 0 1 0 2 Nucleus 1 0.50023164391412 1 0.99953671217176 hm5C_site_31782 DeepMRMD:1;iRNA_m5C:0.99953671217176 31783 chr6 107824969 107824969 1 + G A PRAD 107824953 + 107824933 107824973 41 GAGGATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAG GAGGATATTGAATTCAGGAGCTACCCTACAGATGGGAAGAG < 41bp 1 0.111093024561189 1 0.127942502498627 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOBP ENSG00000112320 CDS Human protein_coding chr6:107824953 chr6:107824969 nonsynonymous SNV 0.997 4 37 hm5C_associated_SNPs_31717 0 0 1 0 1 cytosol 1 0.500231641951068 1 0.999536716097865 hm5C_site_31783 DeepMRMD:1;iRNA_m5C:0.999536716097865 31784 chr6 107824969 107824969 1 + G A PRAD 107824957 + 107824937 107824977 41 ATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAGCCGG ATATTGAATTCAGGAGCTACCCTACAGATGGGAAGAGCCGG < 41bp 1 0.0167922465000783 1 0.159766227006912 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOBP ENSG00000112320 CDS Human protein_coding chr6:107824957 chr6:107824969 nonsynonymous SNV 0.997 4 33 hm5C_associated_SNPs_31718 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31784 DeepMRMD:1;iRNA_m5C:0.999536712157815 31785 chr6 107824969 107824969 1 + G A PRAD 107824958 + 107824938 107824978 41 TATTGAATTCAGGAGCTACCCTACAGATGGGGAGAGCCGGC TATTGAATTCAGGAGCTACCCTACAGATGGGAAGAGCCGGC < 41bp 1 0.638382830118621 1 0.428458392620087 experiment 0.723234339762758 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOBP ENSG00000112320 CDS Human protein_coding chr6:107824958 chr6:107824969 nonsynonymous SNV 0.997 4 32 hm5C_associated_SNPs_31719 0 0 1 0 1 cytosol 1 0.500231643920632 1 0.999536712158737 hm5C_site_31785 DeepMRMD:1;iRNA_m5C:0.999536712158737 31786 chr4 41621299 41621299 1 + G A PRAD 41621300 + 41621280 41621320 41 GGCGGACTTCCCATGGTGAGCCGAAATCAGCAGTGCCTTTT GGCGGACTTCCCATGGTGAACCGAAATCAGCAGTGCCTTTT < 41bp 1 0.622518134085707 1 0.105866551399231 experiment 0.754963731828586 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41621300 chr4:41621299 synonymous SNV . 0 20 hm5C_associated_SNPs_31720 0 0 0 0 1 Nucleus 1 0.500231643922284 1 0.999536712155432 hm5C_site_31786 DeepMRMD:1;iRNA_m5C:0.999536712155432 31787 chr11 118498113 118498113 1 + T C PRAD 118498128 + 118498108 118498148 41 TGAGCTCTATTGAGAAGGACCTGCAAGAGATCATGGACTCA TGAGCCCTATTGAGAAGGACCTGCAAGAGATCATGGACTCA < 41bp 1 0.54811087550635 1 0.13400200009346 experiment 0.903778248987299 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118498128 chr11:118498113 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_31721 0 0 1 0 1 Cytosol 1 0.500231644503401 1 0.999536710993199 hm5C_site_31787 DeepMRMD:1;iRNA_m5C:0.999536710993199 31788 chr7 4824597 4824597 1 + C T PRAD 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCCGCCACCTCCTCTGCTGGCCGCCTGCTGCCGCCCCGGGA < 41bp 1 0.172975775114733 1 0.238365769386292 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824597 synonymous SNV . 0 18 hm5C_associated_SNPs_31723 1 0 1 0 2 chromatin 1 0.500231626266748 1 0.999536747466504 hm5C_site_31788 DeepMRMD:1;iRNA_m5C:0.999536747466504 Spastic paraplegia 48, autosomal recessive Spastic paraplegia 48, autosomal recessive 31789 chr7 4824597 4824597 1 + C T PRAD 4824610 + 4824590 4824630 41 CCTCTGCCGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG CCTCTGCTGGCCGCCTGCTGCCGCCCCGGGAGCGGCTTCGG < 41bp 1 0.195175405701816 1 0.259042203426361 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824610 chr7:4824597 synonymous SNV . 0 8 hm5C_associated_SNPs_31724 1 0 1 0 2 chromatin 1 0.500231643920261 1 0.999536712159478 hm5C_site_31789 DeepMRMD:1;iRNA_m5C:0.999536712159478 Spastic paraplegia 48, autosomal recessive Spastic paraplegia 48, autosomal recessive 31790 chr5 139060727 139060727 1 + G T PRAD 139060711 + 139060691 139060731 41 GCTGTGGCAGGTGCCGAAGCCCTCAATGGCCAGTCCGACTT GCTGTGGCAGGTGCCGAAGCCCTCAATGGCCAGTCCTACTT < 41bp 1 0.485109140688323 1 0.225125879049301 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXXC5 ENSG00000171604 CDS Human protein_coding chr5:139060711 chr5:139060727 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_31726 0 0 1 0 0 Ribosome 1 0.500231643921047 1 0.999536712157906 hm5C_site_31790 DeepMRMD:1;iRNA_m5C:0.999536712157906 31791 chr6 53660191 53660191 1 + A G PRAD 53660192 + 53660172 53660212 41 GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGA GAGCTGCTGCTGGACGCCAGCCAGCTCCGCGAGCTGCCCGA < 41bp 1 0.497932083076772 1 0.601176142692566 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660192 chr6:53660191 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_31727 0 0 0 0 1 Ribosome 1 0.500231643921092 0.797647714614868 0.999536712157815 hm5C_site_31791 DeepMRMD:0.797647714614868;iRNA_m5C:0.999536712157815 31792 chrX 40457949 40457949 1 + T C PRAD 40457957 + 40457937 40457977 41 ACCTGCTCTTTCTTTCTGAACTGCAAGTGCTACATGATATT ACCTGCTCTTTCCTTCTGAACTGCAAGTGCTACATGATATT < 41bp 1 0.693023650303049 1 0.0283918380737305 experiment 0.613952699393902 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40457957 chrX:40457949 nonsynonymous SNV 0.999 4 13 hm5C_associated_SNPs_31728 0 0 1 0 2 Ribosome 1 0.500236987432886 1 0.999526025134228 hm5C_site_31792 DeepMRMD:1;iRNA_m5C:0.999526025134228 31793 chr16 20792044 20792044 1 + G C PRAD 20792052 + 20792032 20792072 41 GCAGACATGCCAGTGACAGCCACACCTGTGTGAAGACAAAA GCAGACATGCCACTGACAGCCACACCTGTGTGAAGACAAAA < 41bp 1 0.257217992947477 1 0.299314349889755 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACSM3;ERI2 ENSG00000005187;ENSG00000196678 CDS Human other chr16:20792052 chr16:20792044 nonsynonymous SNV 0.951 1 13 hm5C_associated_SNPs_31729 0 0 1 0 1 unknown 1 0.500230327944965 1 0.999539344110071 hm5C_site_31793 DeepMRMD:1;iRNA_m5C:0.999539344110071 31794 chr2 97464910 97464910 1 + C A PRAD 97464916 + 97464896 97464936 41 AGTACTACGCCCGCCATTACCTGTACACCCGAAATAAGCCG AGTACTACGCCCGCAATTACCTGTACACCCGAAATAAGCCG < 41bp 1 0.610505435391008 1 0.799312233924866 experiment 0.778989129217984 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97464916 chr2:97464910 nonsynonymous SNV 0.895 1 15 hm5C_associated_SNPs_31730 0 0 1 0 1 chromatin 1 0.500231649490804 0.401375532150268 0.999536701018391 hm5C_site_31794 DeepMRMD:0.401375532150268;iRNA_m5C:0.999536701018391 31795 chr12 64173824 64173824 1 + C T PRAD 64173833 + 64173813 64173853 41 TACCACGTCTTCTTCGGGCGCCGCCGCCAGGCGCCGGCCGG TACCACGTCTTTTTCGGGCGCCGCCGCCAGGCGCCGGCCGG < 41bp 1 0.39753104110097 1 0.0804232358932495 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64173833 chr12:64173824 synonymous SNV . 0 12 hm5C_associated_SNPs_31731 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921175 1 0.99953671215765 hm5C_site_31795 DeepMRMD:1;iRNA_m5C:0.99953671215765 31796 chr10 99517472 99517472 1 + G C PRAD 99517475 + 99517455 99517495 41 GCCCAAGTCCTCCATGGGGGCCACAGGTGAGTGGTGCAGGT GCCCAAGTCCTCCATGGCGGCCACAGGTGAGTGGTGCAGGT < 41bp 1 0.450668860124596 1 0.15926006436348 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99517475 chr10:99517472 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_31732 0 0 1 0 2 Ribosome 1 0.500231643919318 1 0.999536712161363 hm5C_site_31796 DeepMRMD:1;iRNA_m5C:0.999536712161363 31797 chr1 145325998 145325998 1 + G T PRAD 145325991 + 145325971 145326011 41 GATGAGAAAGGGCCTGAAGTCTTGCAAGACTCACTGGATAG GATGAGAAAGGGCCTGAAGTCTTGCAATACTCACTGGATAG < 41bp 1 0.164332815096655 1 0.156983315944672 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NBPF10 ENSG00000163386 CDS Human other chr1:145325991 chr1:145325998 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_31733 0 0 0 0 1 chromatin 1 0.500231644037036 1 0.999536711925928 hm5C_site_31797 DeepMRMD:1;iRNA_m5C:0.999536711925928 31798 chr6 44218061 44218061 1 + G A PRAD 44218068 + 44218048 44218088 41 GGAAATTAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGA GGAAATTAGTGATAATGAGGCAGAGGAAGAGAAAGGTGAGA < 41bp 1 0.404470744950091 1 0.628793239593506 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218068 chr6:44218061 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_31734 0 0 1 0 1 Nucleus 1 0.500231643921092 0.742413520812988 0.999536712157815 hm5C_site_31798 DeepMRMD:0.742413520812988;iRNA_m5C:0.999536712157815 31799 chr2 109365452 109365452 1 + C T PRAD 109365446 + 109365426 109365466 41 ATTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGCATT ATTGTTGAAACTTTTGCCAACAAAAGTGGGCAGTCTGCATT < 41bp 1 0.41975583165593 1 0.173236608505249 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109365446 chr2:109365452 synonymous SNV . 0 27 hm5C_associated_SNPs_31735 0 0 1 0 1 Nucleus 1 0.500231747575803 1 0.999536504848394 hm5C_site_31799 DeepMRMD:1;iRNA_m5C:0.999536504848394 31800 chr15 96875647 96875647 1 + C G PRAD 96875664 + 96875644 96875684 41 AAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGC AAGGGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGC < 41bp 1 0.574985163529107 1 0.354957580566406 experiment 0.850029672941787 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F2 ENSG00000185551 CDS Human protein_coding chr15:96875664 chr15:96875647 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_31736 0 0 1 0 0 Cytoplasm 1 0.500231643921179 1 0.999536712157643 hm5C_site_31800 DeepMRMD:1;iRNA_m5C:0.999536712157643 31801 chr3 14712672 14712672 1 + A G PRAD 14712656 + 14712636 14712676 41 CAAGCCCCCACAGTTACTTTCAAAACTCTGGATGACATGAT CAAGCCCCCACAGTTACTTTCAAAACTCTGGATGACGTGAT < 41bp 1 0.48011238038798 1 0.548837006092072 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14712656 chr3:14712672 nonsynonymous SNV 0.978 2 37 hm5C_associated_SNPs_31737 0 0 1 0 0 Cytosol 1 0.500231643921092 0.902325987815856 0.999536712157815 hm5C_site_31801 DeepMRMD:0.902325987815856;iRNA_m5C:0.999536712157815 31802 chr1 222833531 222833531 1 + A G PRAD 222833549 + 222833529 222833569 41 CCAGAATGGCTCTTTTGGCCCATCCCCTGTGAGTGGTGGAG CCGGAATGGCTCTTTTGGCCCATCCCCTGTGAGTGGTGGAG < 41bp 1 0.100622357224189 1 0.0977946221828461 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222833549 chr1:222833531 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_31738 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31802 DeepMRMD:1;iRNA_m5C:0.999536712157815 31803 chr17 42636061 42636061 1 + C G PRAD 42636043 + 42636023 42636063 41 AAGAAGGAGGGCTGCACCATCCTCTTCATGATGCTCTACTT AAGAAGGAGGGCTGCACCATCCTCTTCATGATGCTCTAGTT < 41bp 1 0.122409387278879 1 0.122043371200562 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZD2 ENSG00000180340 CDS Human protein_coding chr17:42636043 chr17:42636061 stopgain 0.993 1 39 hm5C_associated_SNPs_31740 0 0 1 0 0 exosome 1 0.500231314515283 1 0.999537370969434 hm5C_site_31803 DeepMRMD:1;iRNA_m5C:0.999537370969434 31804 chr17 42635653 42635653 1 + C A PRAD 42635648 + 42635628 42635668 41 GCTACGCCACGCTGGAGCACCCCTTCCACTGCCCGCGCGTC GCTACGCCACGCTGGAGCACCCCTTACACTGCCCGCGCGTC < 41bp 1 0.128228150206045 1 0.0760954320430756 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZD2 ENSG00000180340 CDS Human protein_coding chr17:42635648 chr17:42635653 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_31741 0 0 0 0 0 exosome 1 0.500232412501806 1 0.999535174996388 hm5C_site_31804 DeepMRMD:1;iRNA_m5C:0.999535174996388 31805 chr7 44806203 44806203 1 + G A PRAD 44806215 + 44806195 44806235 41 CTGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCC CTGCCACAAGCGTGATGGGGCCCCCCAGCATGTCTGGAGCC < 41bp 1 0.0818133680417339 1 0.0663761496543884 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806215 chr7:44806203 nonsynonymous SNV 0.984 0 9 hm5C_associated_SNPs_31742 0 0 0 0 1 Cytosol 1 0.500231643921091 1 0.999536712157817 hm5C_site_31805 DeepMRMD:1;iRNA_m5C:0.999536712157817 31806 chr7 44806203 44806203 1 + G A PRAD 44806216 + 44806196 44806236 41 TGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCG TGCCACAAGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCG < 41bp 1 0.123663097819811 1 0.112489849328995 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806216 chr7:44806203 nonsynonymous SNV 0.984 0 8 hm5C_associated_SNPs_31743 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_31806 DeepMRMD:1;iRNA_m5C:0.999536712157815 31807 chr7 44806203 44806203 1 + G A PRAD 44806217 + 44806197 44806237 41 GCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGG GCCACAAGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGG < 41bp 1 0.488973880493434 1 0.119719505310059 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806217 chr7:44806203 nonsynonymous SNV 0.984 0 7 hm5C_associated_SNPs_31744 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31807 DeepMRMD:1;iRNA_m5C:0.999536712157815 31808 chr7 44806203 44806203 1 + G A PRAD 44806218 + 44806198 44806238 41 CCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGG CCACAAGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGG < 41bp 1 0.136787794116772 1 0.171146035194397 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806218 chr7:44806203 nonsynonymous SNV 0.984 0 6 hm5C_associated_SNPs_31745 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31808 DeepMRMD:1;iRNA_m5C:0.999536712157815 31809 chr7 44806203 44806203 1 + G A PRAD 44806219 + 44806199 44806239 41 CACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGGG CACAAGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGGG < 41bp 1 0.108165905856085 1 0.444455057382584 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806219 chr7:44806203 nonsynonymous SNV 0.984 0 5 hm5C_associated_SNPs_31746 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31809 DeepMRMD:1;iRNA_m5C:0.999536712157815 31810 chr1 16778446 16778446 1 + T C PRAD 16778447 + 16778427 16778467 41 AAACCTCCACCCTGATCCCTCCCCCTGGGGAGCAGTTGGCT AAACCTCCACCCTGATCCCCCCCCCTGGGGAGCAGTTGGCT < 41bp 1 0.131748114090127 1 0.149364858865738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778447 chr1:16778446 synonymous SNV . 0 20 hm5C_associated_SNPs_31747 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_31810 DeepMRMD:1;iRNA_m5C:0.999536712157815 31811 chr1 16778446 16778446 1 + T C PRAD 16778448 + 16778428 16778468 41 AACCTCCACCCTGATCCCTCCCCCTGGGGAGCAGTTGGCTG AACCTCCACCCTGATCCCCCCCCCTGGGGAGCAGTTGGCTG < 41bp 1 0.291985023263908 1 0.268131941556931 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778448 chr1:16778446 synonymous SNV . 0 19 hm5C_associated_SNPs_31748 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_31811 DeepMRMD:1;iRNA_m5C:0.999536712157815 31812 chr1 16778446 16778446 1 + T C PRAD 16778449 + 16778429 16778469 41 ACCTCCACCCTGATCCCTCCCCCTGGGGAGCAGTTGGCTGT ACCTCCACCCTGATCCCCCCCCCTGGGGAGCAGTTGGCTGT < 41bp 1 0.326419621627578 1 0.0917003452777863 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778449 chr1:16778446 synonymous SNV . 0 18 hm5C_associated_SNPs_31749 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31812 DeepMRMD:1;iRNA_m5C:0.999536712157815 31813 chr1 16778446 16778446 1 + T C PRAD 16778450 + 16778430 16778470 41 CCTCCACCCTGATCCCTCCCCCTGGGGAGCAGTTGGCTGTG CCTCCACCCTGATCCCCCCCCCTGGGGAGCAGTTGGCTGTG < 41bp 1 0.4928043802457 1 0.719074249267578 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778450 chr1:16778446 synonymous SNV . 0 17 hm5C_associated_SNPs_31750 0 0 1 0 1 Ribosome 1 0.500231643921092 0.561851501464844 0.999536712157815 hm5C_site_31813 DeepMRMD:0.561851501464844;iRNA_m5C:0.999536712157815 31814 chr22 45958914 45958914 1 + G T PRAD 45958896 + 45958876 45958916 41 CACCAACATCCAAGCGCCCGCGGTGGTTTTCCGCATGGGCC CACCAACATCCAAGCGCCCGCGGTGGTTTTCCGCATGGTCC < 41bp 1 0.41440128733984 1 0.362183451652527 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45958896 chr22:45958914 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_31751 0 0 1 0 0 cytosol 1 0.500231585490499 1 0.999536829019002 hm5C_site_31814 DeepMRMD:1;iRNA_m5C:0.999536829019002 31815 chr1 3342257 3342257 1 + G A PRAD 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTGCAACCGCTGCTTCAGGCAGCAGACCAA < 41bp 1 0.302720603243002 1 0.439554035663605 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342257 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_31752 0 0 0 0 1 Nucleus 1 0.500231644067746 1 0.999536711864508 hm5C_site_31815 DeepMRMD:1;iRNA_m5C:0.999536711864508 31816 chr10 103906651 103906651 1 + G A PRAD 103906635 + 103906615 103906655 41 TCCATGTGGGCTCTGGGGACCATGACTATTGTGTCCGGAGC TCCATGTGGGCTCTGGGGACCATGACTATTGTGTCCAGAGC < 41bp 1 0.339866683428004 1 0.180812478065491 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103906635 chr10:103906651 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_31754 0 0 1 0 0 Cytosol 1 0.500231634846934 1 0.999536730306132 hm5C_site_31816 DeepMRMD:1;iRNA_m5C:0.999536730306132 31817 chr12 109704163 109704163 1 + C T READ 109704157 + 109704137 109704177 41 GTCTACCATGGACAGCCCGGCCTCCACCTGACCGTGGCCCG GTCTACCATGGACAGCCCGGCCTCCATCTGACCGTGGCCCG < 41bp 1 0.0465252277850566 1 0.106110423803329 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ACACB ENSG00000076555 CDS Human protein_coding chr12:109704157 chr12:109704163 nonsynonymous SNV 0.312 2 27 hm5C_associated_SNPs_31755 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31817 DeepMRMD:1;iRNA_m5C:0.999536712157815 31818 chr1 155028655 155028655 1 + G A READ 155028667 + 155028647 155028687 41 TCACCCTCGAAAACTTCCTCCACTGGCGCAGGGCACATTTG TCACCCTCAAAAACTTCCTCCACTGGCGCAGGGCACATTTG < 41bp 1 0.372677088766781 1 0.318515121936798 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155028667 chr1:155028655 nonsynonymous SNV 0.313 1 9 hm5C_associated_SNPs_31756 0 0 0 0 1 Ribosome 1 0.500231643871187 1 0.999536712257627 hm5C_site_31818 DeepMRMD:1;iRNA_m5C:0.999536712257627 31819 chr5 76355533 76355533 1 + T A READ 76355513 + 76355493 76355533 41 GAGCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACT GAGCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACA < 41bp 1 0.452824849020478 1 0.415601134300232 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76355513 chr5:76355533 synonymous SNV . 0 41 hm5C_associated_SNPs_31757 0 0 1 0 2 Ribosome 1 0.500231643920383 1 0.999536712159234 hm5C_site_31819 DeepMRMD:1;iRNA_m5C:0.999536712159234 31820 chr6 151670295 151670295 1 + G A READ 151670287 + 151670267 151670307 41 AAGCCACGCAGAAATTTCTCCCCCAGCCGAATCTGGCCAAG AAGCCACGCAGAAATTTCTCCCCCAGCCAAATCTGGCCAAG < 41bp 1 0.297771516502809 1 0.0984372794628143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151670287 chr6:151670295 nonsynonymous SNV 0.005 1 29 hm5C_associated_SNPs_31758 0 0 1 0 0 Ribosome 1 0.500231643921182 1 0.999536712157636 hm5C_site_31820 DeepMRMD:1;iRNA_m5C:0.999536712157636 31821 chr3 52245344 52245344 1 + C A READ 52245356 + 52245336 52245376 41 CACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTG CACGAGTTATCTGATTGACACCGTACGGTCCTATGCTGCTG < 41bp 1 0.40897176660063 1 0.162454098463058 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245356 chr3:52245344 nonsynonymous SNV 0.395 1 9 hm5C_associated_SNPs_31759 0 0 0 0 1 Cytosol 1 0.500231643921087 1 0.999536712157827 hm5C_site_31821 DeepMRMD:1;iRNA_m5C:0.999536712157827 31822 chr3 52245344 52245344 1 + C A READ 52245357 + 52245337 52245377 41 ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGG ACGAGTTATCTGATTGACACCGTACGGTCCTATGCTGCTGG < 41bp 1 0.175657975743615 1 0.21091639995575 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245357 chr3:52245344 nonsynonymous SNV 0.395 1 8 hm5C_associated_SNPs_31760 0 0 0 0 1 Cytosol 1 0.500211910924756 1 0.999576178150488 hm5C_site_31822 DeepMRMD:1;iRNA_m5C:0.999576178150488 31823 chr3 52245344 52245344 1 + C A READ 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTATCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC < 41bp 1 0.301576104857945 1 0.400163054466248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245344 nonsynonymous SNV 0.395 1 4 hm5C_associated_SNPs_31761 0 0 0 0 1 Cytosol 1 0.500231643844942 1 0.999536712310116 hm5C_site_31823 DeepMRMD:1;iRNA_m5C:0.999536712310116 31824 chr6 34950944 34950944 1 + G A READ 34950926 + 34950906 34950946 41 AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCGGG AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCAGG < 41bp 1 0.115705130596063 1 0.187910139560699 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:34950926 chr6:34950944 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_31763 0 0 1 0 2 Cytosol 1 0.500231645004859 1 0.999536709990283 hm5C_site_31824 DeepMRMD:1;iRNA_m5C:0.999536709990283 31825 chr15 29346694 29346694 1 + G A READ 29346702 + 29346682 29346722 41 GAGGAGGCCAACGGGAACACCGGCGCCTCCCCCTACCGCCT GAGGAGGCCAACAGGAACACCGGCGCCTCCCCCTACCGCCT < 41bp 1 0.654974980538302 1 0.499525427818298 experiment 0.690050038923395 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control APBA2 ENSG00000034053 CDS Human protein_coding chr15:29346702 chr15:29346694 nonsynonymous SNV 0.151 3 13 hm5C_associated_SNPs_31765 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31825 DeepMRMD:1;iRNA_m5C:0.999536712157815 31826 chr3 49720107 49720107 1 + C T READ 49720112 + 49720092 49720132 41 GACCTACAGGGCCTGCGTGGCCCGGAACCCCGTGATCAACA GACCTACAGGGCCTGTGTGGCCCGGAACCCCGTGATCAACA < 41bp 1 0.539547901549432 1 0.102864980697632 experiment 0.920904196901137 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49720112 chr3:49720107 synonymous SNV . 0 16 hm5C_associated_SNPs_31766 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31826 DeepMRMD:1;iRNA_m5C:0.999536712157815 31827 chr11 73073743 73073743 1 + C A READ 73073732 + 73073712 73073752 41 TTCGCCCAGCCCCTCGGGGACGCTGCAGAGCCAGGCCAGCC TTCGCCCAGCCCCTCGGGGACGCTGCAGAGCAAGGCCAGCC < 41bp 1 0.179600237425403 1 0.109502643346786 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73073732 chr11:73073743 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_31767 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31827 DeepMRMD:1;iRNA_m5C:0.999536712157815 31828 chr9 133327654 133327654 1 + C T READ 133327657 + 133327637 133327677 41 GTTCTGGCCTACAGTGGCGGCCTGGACACCTCGTGCATCCT GTTCTGGCCTACAGTGGTGGCCTGGACACCTCGTGCATCCT < 41bp 1 0.176008735212178 1 0.154699176549911 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133327657 chr9:133327654 synonymous SNV . 0 18 hm5C_associated_SNPs_31768 0 0 1 0 2 Ribosome 1 0.500231666132611 1 0.999536667734778 hm5C_site_31828 DeepMRMD:1;iRNA_m5C:0.999536667734778 31829 chr7 149576436 149576436 1 + C T READ 149576429 + 149576409 149576449 41 TGATGTGCTTTTCAGGTGCCCAGCTCTCGGAATGACTGTGG TGATGTGCTTTTCAGGTGCCCAGCTCTTGGAATGACTGTGG < 41bp 1 0.399369684962298 1 0.495193004608154 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149576429 chr7:149576436 synonymous SNV . 0 28 hm5C_associated_SNPs_31769 0 0 1 0 1 Ribosome 1 0.500231643744734 1 0.999536712510531 hm5C_site_31829 DeepMRMD:1;iRNA_m5C:0.999536712510531 31830 chr1 154303960 154303960 1 + C A READ 154303952 + 154303932 154303972 41 AGCGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT AGCGATAACCAGGTGAATAACCGCCAGTATCAGGTGCTGAT < 41bp 1 0.167477871107275 1 0.0630052983760834 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154303952 chr1:154303960 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_31771 0 0 1 0 2 chromatin 1 0.500231643921104 1 0.999536712157792 hm5C_site_31830 DeepMRMD:1;iRNA_m5C:0.999536712157792 31831 chr7 69583190 69583190 1 + C T READ 69583186 + 69583166 69583206 41 AGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGA AGTGGAGAATCCAAGGGCTTCCACTGGAGCAGCTCTCGGGA < 41bp 1 0.13812158654787 1 0.211949199438095 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69583186 chr7:69583190 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_31772 0 0 0 0 2 Nucleus 1 0.500231643936349 1 0.999536712127302 hm5C_site_31831 DeepMRMD:1;iRNA_m5C:0.999536712127302 31832 chr7 69599557 69599557 1 + C T READ 69599551 + 69599531 69599571 41 CCTTCCAGCTTGGGAACAGGCTACTTCGTAAGTCTATCTCA CCTTCCAGCTTGGGAACAGGCTACTTTGTAAGTCTATCTCA < 41bp 1 0.233873789218784 1 0.0508181154727936 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69599551 chr7:69599557 synonymous SNV . 0 27 hm5C_associated_SNPs_31773 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31832 DeepMRMD:1;iRNA_m5C:0.999536712157815 31833 chr14 23777226 23777226 1 + G A READ 23777246 + 23777226 23777266 41 GATGAACTTTTTCAAGGGGGCCCCAACTGGGGCCGCCTTGT AATGAACTTTTTCAAGGGGGCCCCAACTGGGGCCGCCTTGT < 41bp 1 0.358086659164356 1 0.219213038682938 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL2L2;BCL2L2-PABPN1 ENSG00000129473;ENSG00000258643 CDS Human other chr14:23777246 chr14:23777226 nonsynonymous SNV 0.971 0 1 hm5C_associated_SNPs_31774 0 0 1 0 0 unknown 1 0.500231643943955 1 0.99953671211209 hm5C_site_31833 DeepMRMD:1;iRNA_m5C:0.99953671211209 31834 chr2 32696179 32696179 1 + G T READ 32696172 + 32696152 32696192 41 TGTTGAAGATGAAGCAGCAGCTGCAAAGAAACCTTTGAATG TGTTGAAGATGAAGCAGCAGCTGCAAATAAACCTTTGAATG < 41bp 1 0.409011395413808 1 0.409297108650208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32696172 chr2:32696179 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_31775 0 0 0 0 2 Nucleus 1 0.500231661551736 1 0.999536676896528 hm5C_site_31834 DeepMRMD:1;iRNA_m5C:0.999536676896528 31835 chr2 32696179 32696179 1 + G T READ 32696175 + 32696155 32696195 41 TGAAGATGAAGCAGCAGCTGCAAAGAAACCTTTGAATGGTA TGAAGATGAAGCAGCAGCTGCAAATAAACCTTTGAATGGTA < 41bp 1 0.042009283951004 1 0.259508907794952 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32696175 chr2:32696179 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_31776 0 0 0 0 2 Nucleus 1 0.500231298387414 1 0.999537403225173 hm5C_site_31835 DeepMRMD:1;iRNA_m5C:0.999537403225173 31836 chr10 124921871 124921871 1 + G A READ 124921851 + 124921831 124921871 41 ATGCCTTCAAATGTCACAGACTAAAAGAAAATAATATTGAG ATGCCTTCAAATGTCACAGACTAAAAGAAAATAATATTGAA < 41bp 1 0.518800501360798 1 0.445674031972885 experiment 0.962398997278403 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BUB3 ENSG00000154473 CDS Human protein_coding chr10:124921851 chr10:124921871 synonymous SNV . 0 41 hm5C_associated_SNPs_31777 0 0 1 0 0 Ribosome 1 0.500232327946691 1 0.999535344106619 hm5C_site_31836 DeepMRMD:1;iRNA_m5C:0.999535344106619 31837 chr2 37458878 37458878 1 + G A READ 37458880 + 37458860 37458900 41 GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG GCTGAGGTCAGGTTTGGGACCGTTGTGTGCCGTGGCGCGCG < 41bp 1 0.658293063146183 1 0.309704899787903 experiment 0.683413873707634 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458880 chr2:37458878 synonymous SNV . 0 19 hm5C_associated_SNPs_31779 0 0 1 0 1 chromatin 1 0.500289947202715 1 0.99942010559457 hm5C_site_31837 DeepMRMD:1;iRNA_m5C:0.99942010559457 31838 chr19 35828860 35828860 1 + C A READ 35828874 + 35828854 35828894 41 GAAGTACTGCTGTCAGGTCTCCAATGACGTGGGCCCGGGAA GAAGTAATGCTGTCAGGTCTCCAATGACGTGGGCCCGGGAA < 41bp 1 0.332113345037904 1 0.812487006187439 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD22 ENSG00000012124 CDS Human protein_coding chr19:35828874 chr19:35828860 stopgain 0.022 1 7 hm5C_associated_SNPs_31781 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644091982 0.375025987625122 0.999536711816036 hm5C_site_31838 DeepMRMD:0.375025987625122;iRNA_m5C:0.999536711816036 31839 chr22 19492944 19492944 1 + G A READ 19492963 + 19492943 19492983 41 CGGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC CAGAACGAGGATGAGGAGAACACACTCTCCGTGGACTGCAC < 41bp 1 0.361729134507725 1 0.092549592256546 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19492963 chr22:19492944 nonsynonymous SNV 0.346 1 2 hm5C_associated_SNPs_31782 0 0 1 0 2 Ribosome 1 0.500231643921493 1 0.999536712157014 hm5C_site_31839 DeepMRMD:1;iRNA_m5C:0.999536712157014 31840 chr13 26956965 26956965 1 + T G READ 26956984 + 26956964 26957004 41 TTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA TGTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAA < 41bp 1 0.230061223968477 1 0.115547716617584 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26956984 chr13:26956965 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_31783 0 0 1 0 2 Cytosol 1 0.50023164834619 1 0.999536703307621 hm5C_site_31840 DeepMRMD:1;iRNA_m5C:0.999536703307621 31841 chr1 22333381 22333381 1 + G A READ 22333371 + 22333351 22333391 41 GACTGTTCCCTCCTCCCCAGCAATGACATCGCCCTCATCAA GACTGTTCCCTCCTCCCCAGCAATGACATCACCCTCATCAA < 41bp 1 0.264576771704388 1 0.0496775805950165 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333371 chr1:22333381 nonsynonymous SNV 0.999 2 31 hm5C_associated_SNPs_31784 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920253 1 0.999536712159493 hm5C_site_31841 DeepMRMD:1;iRNA_m5C:0.999536712159493 31842 chr1 22333381 22333381 1 + G A READ 22333377 + 22333357 22333397 41 TCCCTCCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTC TCCCTCCTCCCCAGCAATGACATCACCCTCATCAAGCTCTC < 41bp 1 0.454109988294778 1 0.131106585264206 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333377 chr1:22333381 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_31785 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643909678 1 0.999536712180644 hm5C_site_31842 DeepMRMD:1;iRNA_m5C:0.999536712180644 31843 chr1 22333381 22333381 1 + G A READ 22333380 + 22333360 22333400 41 CTCCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACG CTCCTCCCCAGCAATGACATCACCCTCATCAAGCTCTCACG < 41bp 1 0.258353623351926 1 0.0447815656661987 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333380 chr1:22333381 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_31786 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31843 DeepMRMD:1;iRNA_m5C:0.999536712157815 31844 chr1 22333381 22333381 1 + G A READ 22333382 + 22333362 22333402 41 CCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCA CCTCCCCAGCAATGACATCACCCTCATCAAGCTCTCACGCA < 41bp 1 0.148172958129553 1 0.0207001566886902 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333382 chr1:22333381 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_31787 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31844 DeepMRMD:1;iRNA_m5C:0.999536712157815 31845 chr1 22333381 22333381 1 + G A READ 22333383 + 22333363 22333403 41 CTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAG CTCCCCAGCAATGACATCACCCTCATCAAGCTCTCACGCAG < 41bp 1 0.347114551792012 1 0.0163255631923676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333383 chr1:22333381 nonsynonymous SNV 0.999 2 19 hm5C_associated_SNPs_31788 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643442347 1 0.999536713115306 hm5C_site_31845 DeepMRMD:1;iRNA_m5C:0.999536713115306 31846 chr1 22333381 22333381 1 + G A READ 22333384 + 22333364 22333404 41 TCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGC TCCCCAGCAATGACATCACCCTCATCAAGCTCTCACGCAGC < 41bp 1 0.308627206156791 1 0.0524317622184753 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333384 chr1:22333381 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_31789 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921983 1 0.999536712156034 hm5C_site_31846 DeepMRMD:1;iRNA_m5C:0.999536712156034 31847 chr1 22333381 22333381 1 + G A READ 22333386 + 22333366 22333406 41 CCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGC CCCAGCAATGACATCACCCTCATCAAGCTCTCACGCAGCGC < 41bp 1 0.531801209815494 1 0.336677432060242 experiment 0.936397580369013 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333386 chr1:22333381 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_31790 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921095 1 0.99953671215781 hm5C_site_31847 DeepMRMD:1;iRNA_m5C:0.99953671215781 31848 chr1 22333381 22333381 1 + G A READ 22333389 + 22333369 22333409 41 AGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCA AGCAATGACATCACCCTCATCAAGCTCTCACGCAGCGCCCA < 41bp 1 0.520397707425976 1 0.838311731815338 experiment 0.959204585148048 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333389 chr1:22333381 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_31791 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921349 0.323376536369324 0.999536712157302 hm5C_site_31848 DeepMRMD:0.323376536369324;iRNA_m5C:0.999536712157302 31849 chr1 22333381 22333381 1 + G A READ 22333393 + 22333373 22333413 41 ATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTG ATGACATCACCCTCATCAAGCTCTCACGCAGCGCCCAGCTG < 41bp 1 0.183938106671131 1 0.0278968513011932 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333393 chr1:22333381 nonsynonymous SNV 0.999 2 9 hm5C_associated_SNPs_31792 0 0 0 0 1 Endoplasmic reticulum 1 0.500231626782058 1 0.999536746435884 hm5C_site_31849 DeepMRMD:1;iRNA_m5C:0.999536746435884 31850 chr1 22333381 22333381 1 + G A READ 22333395 + 22333375 22333415 41 GACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGG GACATCACCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGG < 41bp 1 0.270293193852155 1 0.149439424276352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333395 chr1:22333381 nonsynonymous SNV 0.999 2 7 hm5C_associated_SNPs_31793 0 0 0 0 1 Endoplasmic reticulum 1 0.500231603014008 1 0.999536793971984 hm5C_site_31850 DeepMRMD:1;iRNA_m5C:0.999536793971984 31851 chr1 22333381 22333381 1 + G A READ 22333397 + 22333377 22333417 41 CATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAG CATCACCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAG < 41bp 1 0.57071844130392 1 0.254429697990417 experiment 0.858563117392159 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333397 chr1:22333381 nonsynonymous SNV 0.999 2 5 hm5C_associated_SNPs_31794 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921111 1 0.999536712157779 hm5C_site_31851 DeepMRMD:1;iRNA_m5C:0.999536712157779 31852 chr1 22333381 22333381 1 + G A READ 22333399 + 22333379 22333419 41 TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT TCACCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT < 41bp 1 0.589361342700441 1 0.180713444948196 experiment 0.821277314599118 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333399 chr1:22333381 nonsynonymous SNV 0.999 2 3 hm5C_associated_SNPs_31795 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643922185 1 0.99953671215563 hm5C_site_31852 DeepMRMD:1;iRNA_m5C:0.99953671215563 31853 chr1 214794274 214794274 1 + A C READ 214794259 + 214794239 214794279 41 ACAATTCTAGCAGTCCTCATCTTTTGGATCAATTAAAAGCG ACAATTCTAGCAGTCCTCATCTTTTGGATCAATTACAAGCG < 41bp 1 0.0489731303371976 1 0.164264231920242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214794259 chr1:214794274 nonsynonymous SNV 0.913 3 36 hm5C_associated_SNPs_31797 0 0 1 0 1 Nucleus 1 0.500231633578181 1 0.999536732843637 hm5C_site_31853 DeepMRMD:1;iRNA_m5C:0.999536732843637 31854 chr15 41554986 41554986 1 + G A READ 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCAAACTTTGGCTCATTTCCGC < 41bp 1 0.227300285517806 1 0.243649303913116 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41554986 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_31798 0 0 1 0 2 Ribosome 1 0.500231648592272 1 0.999536702815456 hm5C_site_31854 DeepMRMD:1;iRNA_m5C:0.999536702815456 31855 chr7 2472417 2472417 1 + C T READ 2472435 + 2472415 2472455 41 GCCGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCA GCTGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCA < 41bp 1 0.482634432213178 1 0.161406397819519 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472435 chr7:2472417 nonsynonymous SNV 0.003 1 3 hm5C_associated_SNPs_31800 0 0 1 0 0 nucleolus 1 0.500231643921077 1 0.999536712157846 hm5C_site_31855 DeepMRMD:1;iRNA_m5C:0.999536712157846 31856 chr16 11066825 11066825 1 + G A READ 11066834 + 11066814 11066854 41 GCACTACATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA GCACTACATCCAAGATAAAACTGCTGTTCCTTACTTCTCCA < 41bp 1 0.328641712601702 1 0.0430912375450134 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11066834 chr16:11066825 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_31801 0 0 1 0 2 Cytosol 1 0.500231650381513 1 0.999536699236974 hm5C_site_31856 DeepMRMD:1;iRNA_m5C:0.999536699236974 31857 chr15 74918211 74918211 1 + G A READ 74918204 + 74918184 74918224 41 ACATGTGCATCGCCTTTGAGCTCCTGGGCAAGAACACCTTT ACATGTGCATCGCCTTTGAGCTCCTGGACAAGAACACCTTT < 41bp 1 0.418174795071676 1 0.193437725305557 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74918204 chr15:74918211 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_31802 0 0 1 0 2 Nucleus 1 0.500229084685955 1 0.99954183062809 hm5C_site_31857 DeepMRMD:1;iRNA_m5C:0.99954183062809 31858 chr17 57725607 57725607 1 + C T READ 57725620 + 57725600 57725640 41 GCAAAATCGTGTGGTGGGAGCTATGCAGCTATATTCTGTAG GCAAAATTGTGTGGTGGGAGCTATGCAGCTATATTCTGTAG < 41bp 1 0.241992500505467 1 0.0978605151176453 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57725620 chr17:57725607 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_31803 0 0 1 0 1 Nucleus 1 0.500231288504534 1 0.999537422990933 hm5C_site_31858 DeepMRMD:1;iRNA_m5C:0.999537422990933 31859 chr21 46931120 46931120 1 + C T READ 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGATGTCC < 41bp 1 0.0463828499835534 1 0.119751125574112 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931120 synonymous SNV . 0 37 hm5C_associated_SNPs_31804 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31859 DeepMRMD:1;iRNA_m5C:0.999536712157815 31860 chr21 46931120 46931120 1 + C T READ 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGATGTCCT < 41bp 1 0.0615491131117629 1 0.0526973307132721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931120 synonymous SNV . 0 36 hm5C_associated_SNPs_31805 0 0 1 0 2 Nucleus 1 0.50023191289599 1 0.99953617420802 hm5C_site_31860 DeepMRMD:1;iRNA_m5C:0.99953617420802 31861 chr16 57144699 57144699 1 + C T READ 57144680 + 57144660 57144700 41 CCACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCC CCACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCTC < 41bp 1 0.611837527392606 1 0.239770889282227 experiment 0.776324945214789 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144680 chr16:57144699 synonymous SNV . 0 40 hm5C_associated_SNPs_31806 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31861 DeepMRMD:1;iRNA_m5C:0.999536712157815 31862 chr16 57144699 57144699 1 + C T READ 57144681 + 57144661 57144701 41 CACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCC CACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCTCC < 41bp 1 0.230897613513971 1 0.251666396856308 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144681 chr16:57144699 synonymous SNV . 0 39 hm5C_associated_SNPs_31807 0 0 1 0 1 chromatin 1 0.500231643921018 1 0.999536712157964 hm5C_site_31862 DeepMRMD:1;iRNA_m5C:0.999536712157964 31863 chr16 57144699 57144699 1 + C T READ 57144682 + 57144662 57144702 41 ACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCCC ACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCTCCC < 41bp 1 0.334573275030431 1 0.453843355178833 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144682 chr16:57144699 synonymous SNV . 0 38 hm5C_associated_SNPs_31808 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31863 DeepMRMD:1;iRNA_m5C:0.999536712157815 31864 chr16 57144699 57144699 1 + C T READ 57144695 + 57144675 57144715 41 GGGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGT GGGTGCCCCAGCAGCGGGGGCAGCTCCCATGGGCCCCCAGT < 41bp 1 0.297171389364345 1 0.412866562604904 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144695 chr16:57144699 synonymous SNV . 0 25 hm5C_associated_SNPs_31809 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31864 DeepMRMD:1;iRNA_m5C:0.999536712157815 31865 chr16 57144699 57144699 1 + C T READ 57144698 + 57144678 57144718 41 TGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATT TGCCCCAGCAGCGGGGGCAGCTCCCATGGGCCCCCAGTATT < 41bp 1 0.420223419706179 1 0.746267557144165 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144698 chr16:57144699 synonymous SNV . 0 22 hm5C_associated_SNPs_31810 0 0 1 0 1 chromatin 1 0.500231643921092 0.50746488571167 0.999536712157815 hm5C_site_31865 DeepMRMD:0.50746488571167;iRNA_m5C:0.999536712157815 31866 chr16 57144699 57144699 1 + C T READ 57144700 + 57144680 57144720 41 CCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGC CCCCAGCAGCGGGGGCAGCTCCCATGGGCCCCCAGTATTGC < 41bp 1 0.392705522940168 1 0.19904625415802 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144700 chr16:57144699 synonymous SNV . 0 20 hm5C_associated_SNPs_31811 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_31866 DeepMRMD:1;iRNA_m5C:0.999536712157815 31867 chr16 57144699 57144699 1 + C T READ 57144701 + 57144681 57144721 41 CCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGCG CCCAGCAGCGGGGGCAGCTCCCATGGGCCCCCAGTATTGCG < 41bp 1 0.265443588429152 1 0.301990866661072 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144701 chr16:57144699 synonymous SNV . 0 19 hm5C_associated_SNPs_31812 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_31867 DeepMRMD:1;iRNA_m5C:0.999536712157815 31868 chr16 89645283 89645283 1 + C T READ 89645265 + 89645245 89645285 41 CTGGGTTACGGCCTCCACAGCCAGCCCAAAAGTGGCTTCTG CTGGGTTACGGCCTCCACAGCCAGCCCAAAAGTGGCTTTTG < 41bp 1 0.0740954689089116 1 0.800839006900787 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89645265 chr16:89645283 synonymous SNV . 0 39 hm5C_associated_SNPs_31813 0 0 1 0 1 Nucleus 1 0.500231643920775 0.398321986198426 0.999536712158449 hm5C_site_31868 DeepMRMD:0.398321986198426;iRNA_m5C:0.999536712158449 31869 chr2 211502539 211502539 1 + A C READ 211502553 + 211502533 211502573 41 GGTTAAAGAAAAACATCCACCCTTGGGTTAAACAGGTAAAG GGTTAACGAAAAACATCCACCCTTGGGTTAAACAGGTAAAG < 41bp 1 0.0405153642583918 1 0.237434804439545 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211502553 chr2:211502539 nonsynonymous SNV 0.999 3 7 hm5C_associated_SNPs_31814 0 0 0 0 1 Nucleus 1 0.500231577753442 1 0.999536844493116 hm5C_site_31869 DeepMRMD:1;iRNA_m5C:0.999536844493116 31870 chr7 87005030 87005030 1 + C T READ 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGCGAACTTGATGGGCTAAGGTT < 41bp 1 0.20045284663075 1 0.430434674024582 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005030 stopgain 0.992 0 27 hm5C_associated_SNPs_31815 0 0 1 0 2 Nucleus 1 0.500231643921109 1 0.999536712157782 hm5C_site_31870 DeepMRMD:1;iRNA_m5C:0.999536712157782 31871 chr11 126213259 126213259 1 + G A READ 126213246 + 126213226 126213266 41 ATCTGCCATCGCCGGGGCATCAGATCCCTACGCGACCTTAC ATCTGCCATCGCCGGGGCATCAGATCCCTACGCAACCTTAC < 41bp 1 0.405461741140563 1 0.52761447429657 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126213246 chr11:126213259 nonsynonymous SNV 0.111 5 34 hm5C_associated_SNPs_31816 0 0 1 0 2 Ribosome 1 0.500231643921102 0.94477105140686 0.999536712157797 hm5C_site_31871 DeepMRMD:0.94477105140686;iRNA_m5C:0.999536712157797 31872 chr12 113596730 113596730 1 + G A READ 113596717 - 113596697 113596737 41 GCGCCTTCGGCCGGGGTGCCCGCTCCAAGAAGGGCAAGATG GCGCCTTTGGCCGGGGTGCCCGCTCCAAGAAGGGCAAGATG < 41bp 1 0.340584401956032 1 0.36527293920517 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX54 ENSG00000123064 CDS Human protein_coding chr12:113596717 chr12:113596730 synonymous SNV . 0 8 hm5C_associated_SNPs_31817 0 0 1 0 0 Ribosome 1 0.500231643878861 1 0.999536712242278 hm5C_site_31872 DeepMRMD:1;iRNA_m5C:0.999536712242278 31873 chr12 113596730 113596730 1 + G A READ 113596718 - 113596698 113596738 41 GGCGCCTTCGGCCGGGGTGCCCGCTCCAAGAAGGGCAAGAT GGCGCCTTTGGCCGGGGTGCCCGCTCCAAGAAGGGCAAGAT < 41bp 1 0.227577901305433 1 0.475475370883942 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX54 ENSG00000123064 CDS Human protein_coding chr12:113596718 chr12:113596730 synonymous SNV . 0 9 hm5C_associated_SNPs_31818 0 0 1 0 0 Ribosome 1 0.500231642154655 1 0.999536715690689 hm5C_site_31873 DeepMRMD:1;iRNA_m5C:0.999536715690689 31874 chr16 90027425 90027425 1 + G A READ 90027406 + 90027386 90027426 41 CCCTGTGTGAGCTCCAAAGTCAGCCACCAAGCTGAATACGA CCCTGTGTGAGCTCCAAAGTCAGCCACCAAGCTGAATACAA < 41bp 1 0.484401292652809 1 0.261037409305573 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90027406 chr16:90027425 nonsynonymous SNV 0.989 2 40 hm5C_associated_SNPs_31819 0 0 1 0 1 Ribosome 1 0.500231643700391 1 0.999536712599217 hm5C_site_31874 DeepMRMD:1;iRNA_m5C:0.999536712599217 31875 chr10 12162812 12162812 1 + G T READ 12162801 + 12162781 12162821 41 TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTTCCAGTACCC < 41bp 1 0.162062570890349 1 0.650351285934448 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12162801 chr10:12162812 nonsynonymous SNV 0.956 2 32 hm5C_associated_SNPs_31820 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921109 0.699297428131104 0.999536712157782 hm5C_site_31875 DeepMRMD:0.699297428131104;iRNA_m5C:0.999536712157782 31876 chr7 21934379 21934379 1 + C T READ 21934397 + 21934377 21934417 41 TTCGGGAAATACGTATATCACTTGAACAACTGGACCTTAGT TTTGGGAAATACGTATATCACTTGAACAACTGGACCTTAGT < 41bp 1 0.230700567763426 1 0.43570750951767 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21934397 chr7:21934379 nonsynonymous SNV 0.997 2 3 hm5C_associated_SNPs_31821 0 0 0 0 1 nucleolus 1 0.500231748233258 1 0.999536503533484 hm5C_site_31876 DeepMRMD:1;iRNA_m5C:0.999536503533484 31877 chr19 10940849 10940849 1 + C T READ 10940869 + 10940849 10940889 41 CGGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCT TGGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCT < 41bp 1 0.235238340519525 1 0.085306316614151 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940869 chr19:10940849 nonsynonymous SNV 0.113 4 1 hm5C_associated_SNPs_31822 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31877 DeepMRMD:1;iRNA_m5C:0.999536712157815 31878 chr10 129141963 129141963 1 + G T READ 129141945 + 129141925 129141965 41 TTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCA TTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTTCA < 41bp 1 0.0809230764601479 1 0.0471609830856323 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141945 chr10:129141963 synonymous SNV . 0 39 hm5C_associated_SNPs_31823 0 0 0 0 2 Nucleus 1 0.500234351199846 1 0.999531297600307 hm5C_site_31878 DeepMRMD:1;iRNA_m5C:0.999531297600307 31879 chr10 129141963 129141963 1 + G T READ 129141946 + 129141926 129141966 41 TTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAA TTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTTCAA < 41bp 1 0.0666119152808957 1 0.0627136528491974 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141946 chr10:129141963 synonymous SNV . 0 38 hm5C_associated_SNPs_31824 0 0 0 0 2 Nucleus 1 0.500231375764711 1 0.999537248470577 hm5C_site_31879 DeepMRMD:1;iRNA_m5C:0.999537248470577 31880 chr10 129141963 129141963 1 + G T READ 129141950 + 129141930 129141970 41 CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAACTGG CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTTCAACTGG < 41bp 1 0.542450114685337 1 0.860026240348816 experiment 0.915099770629326 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141950 chr10:129141963 synonymous SNV . 0 34 hm5C_associated_SNPs_31825 0 0 0 0 2 Nucleus 1 0.500231643919956 0.279947519302368 0.999536712160087 hm5C_site_31880 DeepMRMD:0.279947519302368;iRNA_m5C:0.999536712160087 31881 chr10 129141963 129141963 1 + G T READ 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTTTCCTTACTCAAGAGTCCCTTCAACTGGAGAATTTTTC < 41bp 1 0.00274663598207636 1 0.0373263359069824 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141963 synonymous SNV . 0 24 hm5C_associated_SNPs_31826 0 0 0 0 2 Nucleus 1 0.500231643922667 1 0.999536712154666 hm5C_site_31881 DeepMRMD:1;iRNA_m5C:0.999536712154666 31882 chr10 129141963 129141963 1 + G T READ 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTTTCCTTACTCAAGAGTCCCTTCAACTGGAGAATTTTTCA < 41bp 1 0.0795746614713031 1 0.164921462535858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141963 synonymous SNV . 0 23 hm5C_associated_SNPs_31827 0 0 0 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_31882 DeepMRMD:1;iRNA_m5C:0.999536712157815 31883 chr10 129141963 129141963 1 + G T READ 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTTCAACTGGAGAATTTTTCAAGT < 41bp 1 0.133512327404877 1 0.480309098958969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141963 synonymous SNV . 0 20 hm5C_associated_SNPs_31828 0 0 0 0 2 Nucleus 1 0.500231643920848 1 0.999536712158304 hm5C_site_31883 DeepMRMD:1;iRNA_m5C:0.999536712158304 31884 chr10 129141963 129141963 1 + G T READ 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTTCAACTGGAGAATTTTTCAAGTGCC < 41bp 1 0.557196506304086 1 0.790382146835327 experiment 0.885606987391827 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141963 synonymous SNV . 0 17 hm5C_associated_SNPs_31829 0 0 0 0 2 Nucleus 1 0.500231643892666 0.419235706329346 0.999536712214669 hm5C_site_31884 DeepMRMD:0.419235706329346;iRNA_m5C:0.999536712214669 31885 chr10 129141963 129141963 1 + G T READ 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTTCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA < 41bp 1 0.347519658390161 1 0.932257950305939 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141963 synonymous SNV . 0 4 hm5C_associated_SNPs_31830 0 0 0 0 2 Nucleus 1 0.500231720075736 0.135484099388122 0.999536559848527 hm5C_site_31885 DeepMRMD:0.135484099388122;iRNA_m5C:0.999536559848527 31886 chr3 108353748 108353748 1 + T C READ 108353763 + 108353743 108353783 41 AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG AAAGTCGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG < 41bp 1 0.158257597675041 1 0.48019927740097 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108353763 chr3:108353748 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_31831 0 0 0 0 1 Ribosome 1 0.500231643705854 1 0.999536712588292 hm5C_site_31886 DeepMRMD:1;iRNA_m5C:0.999536712588292 31887 chr3 183854482 183854482 1 + T C READ 183854500 + 183854480 183854520 41 TGTCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGAACATT TGCCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGAACATT < 41bp 1 0.313164752530989 1 0.250716209411621 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183854500 chr3:183854482 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_31832 0 0 1 0 2 Ribosome 1 0.500231642035471 1 0.999536715929057 hm5C_site_31887 DeepMRMD:1;iRNA_m5C:0.999536715929057 31888 chr14 103802222 103802222 1 + G A READ 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACCGCAGCATGTCAGACCAGTTCTATCGCTACAAGATG < 41bp 1 0.154950045926991 1 0.130377352237701 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802222 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_31834 0 0 1 0 1 Cytosol 1 0.500231643922106 1 0.999536712155788 hm5C_site_31888 DeepMRMD:1;iRNA_m5C:0.999536712155788 31889 chr2 85598268 85598268 1 + C T READ 85598251 + 85598231 85598271 41 GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTCGGG GAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCTTTGGG < 41bp 1 0.686964187120862 1 0.712544083595276 experiment 0.626071625758277 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598251 chr2:85598268 synonymous SNV . 0 38 hm5C_associated_SNPs_31835 0 0 1 0 1 Cytosol 1 0.500231643921095 0.574911832809448 0.99953671215781 hm5C_site_31889 DeepMRMD:0.574911832809448;iRNA_m5C:0.99953671215781 31890 chr17 4859430 4859430 1 + G A READ 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCGAATCAATCCAGGCGTGAG < 41bp 1 0.493032135023554 1 0.219066560268402 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859430 synonymous SNV . 0 28 hm5C_associated_SNPs_31836 0 0 1 0 2 nucleus 1 0.500231643816318 1 0.999536712367365 hm5C_site_31890 DeepMRMD:1;iRNA_m5C:0.999536712367365 31891 chr17 4859430 4859430 1 + G A READ 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCGAATCAATCCAGGCGTGAGT < 41bp 1 0.384404905815287 1 0.477937430143356 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859430 synonymous SNV . 0 27 hm5C_associated_SNPs_31837 0 0 1 0 2 nucleus 1 0.500231563477845 1 0.999536873044311 hm5C_site_31891 DeepMRMD:1;iRNA_m5C:0.999536873044311 31892 chr7 133164808 133164808 1 + G A READ 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTCAAATCGTCCTCCCATGCCATCAGTA < 41bp 1 0.282491534948024 1 0.158703446388245 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164808 nonsynonymous SNV 0.974 3 17 hm5C_associated_SNPs_31838 0 0 1 0 2 Nucleus 1 0.50023164392126 1 0.999536712157481 hm5C_site_31892 DeepMRMD:1;iRNA_m5C:0.999536712157481 31893 chr3 138341076 138341076 1 + C T READ 138341068 + 138341048 138341088 41 TGGATGTTCAAATTAGTGGGCAAAGAAACATTCTATGTTGG TGGATGTTCAAATTAGTGGGCAAAGAAATATTCTATGTTGG < 41bp 1 0.129837472714824 1 0.355679929256439 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138341068 chr3:138341076 nonsynonymous SNV 0.997 1 29 hm5C_associated_SNPs_31839 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_31893 DeepMRMD:1;iRNA_m5C:0.999536712157814 31894 chr1 110586383 110586383 1 + C T READ 110586381 + 110586361 110586401 41 GTCTGGAGGGGGAGACGTTTCCCCTGGAACGGGATGAAGTG GTCTGGAGGGGGAGACGTTTCCTCTGGAACGGGATGAAGTG < 41bp 1 0.366363492279984 1 0.363503038883209 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110586381 chr1:110586383 synonymous SNV . 0 23 hm5C_associated_SNPs_31840 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31894 DeepMRMD:1;iRNA_m5C:0.999536712157815 31895 chr1 78325057 78325057 1 + C T READ 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTTGACA < 41bp 1 0.192073424504009 1 0.100172162055969 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325057 stopgain 0.998 1 37 hm5C_associated_SNPs_31841 0 0 0 0 2 unknown 1 0.500231643879392 1 0.999536712241215 hm5C_site_31895 DeepMRMD:1;iRNA_m5C:0.999536712241215 31896 chr15 38773558 38773558 1 + G A READ 38773574 + 38773554 38773594 41 CAACGATTACAATGGCACATCTACTTGCTGCTCGTGAAGAT CAACAATTACAATGGCACATCTACTTGCTGCTCGTGAAGAT < 41bp 1 0.374431147437734 1 0.120952934026718 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM98B ENSG00000171262 CDS Human protein_coding chr15:38773574 chr15:38773558 synonymous SNV . 0 5 hm5C_associated_SNPs_31842 0 0 1 0 1 Cytosol 1 0.500231768024233 1 0.999536463951533 hm5C_site_31896 DeepMRMD:1;iRNA_m5C:0.999536463951533 31897 chr2 207651563 207651563 1 + C T READ 207651570 + 207651550 207651590 41 GATGAATTACTTTCCCCTGGCTCCTTTTAATCAGCTTCTGC GATGAATTACTTTTCCCTGGCTCCTTTTAATCAGCTTCTGC < 41bp 1 0.296139274483926 1 0.0605533123016357 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207651570 chr2:207651563 nonsynonymous SNV 0.114 4 14 hm5C_associated_SNPs_31843 0 0 1 0 1 Nucleus 1 0.500231643920449 1 0.999536712159102 hm5C_site_31897 DeepMRMD:1;iRNA_m5C:0.999536712159102 31898 chr2 207651563 207651563 1 + C T READ 207651572 + 207651552 207651592 41 TGAATTACTTTCCCCTGGCTCCTTTTAATCAGCTTCTGCAA TGAATTACTTTTCCCTGGCTCCTTTTAATCAGCTTCTGCAA < 41bp 1 0.0359047789317588 1 0.0136929154396057 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207651572 chr2:207651563 nonsynonymous SNV 0.114 4 12 hm5C_associated_SNPs_31844 0 0 1 0 1 Nucleus 1 0.500231643921389 1 0.999536712157222 hm5C_site_31898 DeepMRMD:1;iRNA_m5C:0.999536712157222 31899 chr3 58128383 58128383 1 + G A READ 58128382 + 58128362 58128402 41 GCCTTCTGTTTTTAGGTGACCGAAGAGGCCTATGTCCCAGT GCCTTCTGTTTTTAGGTGACCAAAGAGGCCTATGTCCCAGT < 41bp 1 0.140982409044931 1 0.810310482978821 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58128382 chr3:58128383 nonsynonymous SNV 0.987 2 22 hm5C_associated_SNPs_31845 0 0 1 0 2 Cytosol 1 0.500231642723693 0.379379034042358 0.999536714552615 hm5C_site_31899 DeepMRMD:0.379379034042358;iRNA_m5C:0.999536714552615 31900 chr14 52417415 52417415 1 + G A READ 52417401 + 52417381 52417421 41 TCTATCCAGCACTCCGATGGCCAGCAACAACACCGCCAGCA TCTATCCAGCACTCCGATGGCCAGCAACAACACCACCAGCA < 41bp 1 0.298282408910617 1 0.393130093812943 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNG2 ENSG00000186469 CDS Human protein_coding chr14:52417401 chr14:52417415 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_31846 0 0 0 0 1 Cytosol 1 0.500231639502832 1 0.999536720994337 hm5C_site_31900 DeepMRMD:1;iRNA_m5C:0.999536720994337 31901 chr1 109441582 109441582 1 + C A READ 109441598 + 109441578 109441618 41 ATTTCTTGGTGAATTTGAAACTGCCTCGGAATACTACAAGT ATTTATTGGTGAATTTGAAACTGCCTCGGAATACTACAAGT < 41bp 1 0.330912041808025 1 0.252547532320023 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109441598 chr1:109441582 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_31847 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643922111 1 0.999536712155777 hm5C_site_31901 DeepMRMD:1;iRNA_m5C:0.999536712155777 31902 chrX 2777919 2777919 1 + G A READ 2777923 + 2777903 2777943 41 GTCGTCCACTTTTTGGGGTCCATGAAACCTTGGAACTACAA GTCGTCCACTTTTTGGAGTCCATGAAACCTTGGAACTACAA < 41bp 1 0.33087354777285 1 0.198322683572769 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG2 ENSG00000056998 CDS Human protein_coding chrX:2777923 chrX:2777919 nonsynonymous SNV 0.159 4 17 hm5C_associated_SNPs_31849 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31902 DeepMRMD:1;iRNA_m5C:0.999536712157815 31903 chr1 114483810 114483810 1 + G T READ 114483796 + 114483776 114483816 41 CTTTCAGCATAAGAATCACACCTGCCTTGTTTTTGAAATGT CTTTCAGCATAAGAATCACACCTGCCTTGTTTTTTAAATGT < 41bp 1 0.028408442828966 1 0.163678735494614 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114483796 chr1:114483810 stopgain 1.000 1 35 hm5C_associated_SNPs_31850 0 0 1 0 0 Cytosol 1 0.500231645879169 1 0.999536708241661 hm5C_site_31903 DeepMRMD:1;iRNA_m5C:0.999536708241661 31904 chr1 186106681 186106681 1 + G C READ 186106679 + 186106659 186106699 41 TGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATCCAAAA TGGAGAGCCTGCAGTGTCACCTCTGGAAAAGGCATCCAAAA < 41bp 1 0.146126200488315 1 0.560147881507874 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186106679 chr1:186106681 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_31851 0 0 0 0 1 nucleus 1 0.500231643035423 0.879704236984252 0.999536713929154 hm5C_site_31904 DeepMRMD:0.879704236984252;iRNA_m5C:0.999536713929154 31905 chr2 176988295 176988295 1 + C T READ 176988301 + 176988281 176988321 41 ATTCGCAGCCGCAGCAGCAGCAACTTGACCCAAGTAAGTGC ATTCGCAGCCGCAGTAGCAGCAACTTGACCCAAGTAAGTGC < 41bp 1 0.240032159694712 1 0.0792005360126495 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176988301 chr2:176988295 stopgain 0.998 0 15 hm5C_associated_SNPs_31852 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643943306 1 0.999536712113388 hm5C_site_31905 DeepMRMD:1;iRNA_m5C:0.999536712113388 31906 chr12 104341158 104341158 1 + G A READ 104341157 + 104341137 104341177 41 ACAGAAGACACAGAGCAAGACGAAGATGAAGAAATGGATGT ACAGAAGACACAGAGCAAGACAAAGATGAAGAAATGGATGT < 41bp 1 0.464708201316654 1 0.210536360740662 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104341157 chr12:104341158 nonsynonymous SNV 0.109 0 22 hm5C_associated_SNPs_31853 0 0 1 0 3 Nucleus 1 0.500231645308711 1 0.999536709382578 hm5C_site_31906 DeepMRMD:1;iRNA_m5C:0.999536709382578 31907 chr6 160494390 160494390 1 + C T READ 160494408 + 160494388 160494428 41 TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT TTTGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT < 41bp 1 0.376469165399195 1 0.881084203720093 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494408 chr6:160494390 synonymous SNV . 0 3 hm5C_associated_SNPs_31854 0 0 1 0 0 Endoplasmic reticulum 1 0.500231642865872 0.237831592559814 0.999536714268256 hm5C_site_31907 DeepMRMD:0.237831592559814;iRNA_m5C:0.999536714268256 31908 chr2 131103401 131103401 1 + G A READ 131103398 + 131103378 131103418 41 TTTGGTCCTACTGCCTACTTCACGCTGTGCAATGTGGTCAT TTTGGTCCTACTGCCTACTTCACACTGTGCAATGTGGTCAT < 41bp 1 0.458903394908726 1 0.0457570552825928 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103398 chr2:131103401 synonymous SNV . 0 24 hm5C_associated_SNPs_31855 0 0 1 0 1 Ribosome 1 0.500231647097455 1 0.99953670580509 hm5C_site_31908 DeepMRMD:1;iRNA_m5C:0.99953670580509 31909 chr1 215785252 215785252 1 + G A READ 215785244 + 215785224 215785264 41 CCAACAAACTATTTGTAAGACTCTCATCGACTGGAAAAAGG CCAACAAACTATTTGTAAGACTCTCATCAACTGGAAAAAGG < 41bp 1 0.115528878927463 1 0.0237694084644318 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215785244 chr1:215785252 synonymous SNV . 0 29 hm5C_associated_SNPs_31856 0 0 1 0 2 Ribosome 1 0.500231643921211 1 0.999536712157577 hm5C_site_31909 DeepMRMD:1;iRNA_m5C:0.999536712157577 31910 chr1 233482334 233482334 1 + T C READ 233482335 + 233482315 233482355 41 GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA GGCCCCCGAAGTGATCAAGCCTTCCTTGTTTTCTAAGGGAA < 41bp 1 0.115157771514135 1 0.0717900395393372 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482335 chr1:233482334 nonsynonymous SNV 0.999 4 20 hm5C_associated_SNPs_31857 0 0 1 0 1 unknown 1 0.500231643281543 1 0.999536713436915 hm5C_site_31910 DeepMRMD:1;iRNA_m5C:0.999536713436915 31911 chr5 154396171 154396171 1 + G A READ 154396182 + 154396162 154396202 41 GAGTTACAAGCTGAGCTGGTCAGAATGGAGCAACAGCACCA GAGTTACAAACTGAGCTGGTCAGAATGGAGCAACAGCACCA < 41bp 1 0.646592621562539 1 0.287195533514023 experiment 0.706814756874921 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF4B ENSG00000226650 CDS Human protein_coding chr5:154396182 chr5:154396171 nonsynonymous SNV 0.736 0 10 hm5C_associated_SNPs_31858 0 0 0 0 0 exosome 1 0.50024068826095 1 0.9995186234781 hm5C_site_31911 DeepMRMD:1;iRNA_m5C:0.9995186234781 31912 chr12 57970146 57970146 1 + T C READ 57970126 + 57970106 57970146 41 GCCCGGCTCCGGGACGAGATCAACGAGAAGCAGAAGACCAT GCCCGGCTCCGGGACGAGATCAACGAGAAGCAGAAGACCAC < 41bp 1 0.686275535121934 1 0.527152419090271 experiment 0.627448929756132 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970126 chr12:57970146 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_31859 0 0 0 0 1 Cytosol 1 0.500231644095511 0.945695161819458 0.999536711808978 hm5C_site_31912 DeepMRMD:0.945695161819458;iRNA_m5C:0.999536711808978 31913 chr10 134980981 134980981 1 + C T READ 134980995 + 134980975 134981015 41 TCCATGCGGAGCGTGGCCCACGCCGCCATCTTCCAGAGCCT TCCATGTGGAGCGTGGCCCACGCCGCCATCTTCCAGAGCCT < 41bp 1 0.41781996901294 1 0.148197531700134 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:134980995 chr10:134980981 nonsynonymous SNV 0.302 2 7 hm5C_associated_SNPs_31860 0 0 1 0 1 Endoplasmic reticulum 1 0.500232559650191 1 0.999534880699619 hm5C_site_31913 DeepMRMD:1;iRNA_m5C:0.999534880699619 31914 chr1 32620257 32620257 1 + G A READ 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATGCTCTAAACCCTAAAGAAATGA < 41bp 1 0.343343472165966 1 0.152183324098587 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620257 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_31861 0 0 1 0 2 Cytosol 1 0.500231645348473 1 0.999536709303053 hm5C_site_31914 DeepMRMD:1;iRNA_m5C:0.999536709303053 31915 chr1 32620257 32620257 1 + G A READ 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATGCTCTAAACCCTAAAGAAATGAGA < 41bp 1 0.283332718850094 1 0.200311243534088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620257 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_31862 0 0 1 0 2 Cytosol 1 0.500231588198175 1 0.99953682360365 hm5C_site_31915 DeepMRMD:1;iRNA_m5C:0.99953682360365 31916 chr1 32620257 32620257 1 + G A READ 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCCTAAAGAAATGAGACGAAG < 41bp 1 0.33501407209936 1 0.166236191987991 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620257 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_31863 0 0 1 0 2 Cytosol 1 0.500231643921106 1 0.999536712157788 hm5C_site_31916 DeepMRMD:1;iRNA_m5C:0.999536712157788 31917 chr1 32620257 32620257 1 + G A READ 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCCTAAAGAAATGAGACGAAGA < 41bp 1 0.12989167466237 1 0.21612286567688 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620257 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_31864 0 0 1 0 2 Cytosol 1 0.500237124436937 1 0.999525751126126 hm5C_site_31917 DeepMRMD:1;iRNA_m5C:0.999525751126126 31918 chr22 29533449 29533449 1 + G A READ 29533451 + 29533431 29533471 41 ACCATCCGGGTTCCGGGGGCCTCCCACATCCACTTCAGCTT ACCATCCGGGTTCCGGGGACCTCCCACATCCACTTCAGCTT < 41bp 1 0.266131031435619 1 0.17555969953537 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533451 chr22:29533449 nonsynonymous SNV 0.987 3 19 hm5C_associated_SNPs_31865 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643922347 1 0.999536712155307 hm5C_site_31918 DeepMRMD:1;iRNA_m5C:0.999536712155307 31919 chr12 52636903 52636903 1 + C T READ 52636909 + 52636889 52636929 41 CTGCAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACA CTGCAGGCTGAGATTGACAACATCAAGAACCAGGTGGGACA < 41bp 1 0.357862534648022 1 0.0397600531578064 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636909 chr12:52636903 synonymous SNV . 0 15 hm5C_associated_SNPs_31866 0 0 0 0 1 Cytosol 1 0.500231633928888 1 0.999536732142225 hm5C_site_31919 DeepMRMD:1;iRNA_m5C:0.999536732142225 31920 chr12 52636903 52636903 1 + C T READ 52636912 + 52636892 52636932 41 CAGGCTGAGATCGACAACATCAAGAACCAGGTGGGACAAGT CAGGCTGAGATTGACAACATCAAGAACCAGGTGGGACAAGT < 41bp 1 0.636457428985718 1 0.281375825405121 experiment 0.727085142028564 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636912 chr12:52636903 synonymous SNV . 0 12 hm5C_associated_SNPs_31867 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_31920 DeepMRMD:1;iRNA_m5C:0.999536712157815 31921 chr12 52636903 52636903 1 + C T READ 52636918 + 52636898 52636938 41 GAGATCGACAACATCAAGAACCAGGTGGGACAAGTCCTCCT GAGATTGACAACATCAAGAACCAGGTGGGACAAGTCCTCCT < 41bp 1 0.324175187515622 1 0.57094806432724 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636918 chr12:52636903 synonymous SNV . 0 6 hm5C_associated_SNPs_31868 0 0 0 0 1 Cytosol 1 0.500231643921091 0.85810387134552 0.999536712157819 hm5C_site_31921 DeepMRMD:0.85810387134552;iRNA_m5C:0.999536712157819 31922 chr12 52695769 52695769 1 + C T READ 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA GCCCGGTCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA < 41bp 1 0.427870381249898 1 0.122179955244064 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695769 synonymous SNV . 0 7 hm5C_associated_SNPs_31870 0 0 0 0 1 nucleus 1 0.500231845095389 1 0.999536309809222 hm5C_site_31922 DeepMRMD:1;iRNA_m5C:0.999536309809222 31923 chr18 21508151 21508151 1 + G A READ 21508167 + 21508147 21508187 41 TGTCGTTAGATTGAATGATACTGTGGGAGTAACCAAAAAGT TGTCATTAGATTGAATGATACTGTGGGAGTAACCAAAAAGT < 41bp 1 0.1219037259866 1 0.232439517974854 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21508167 chr18:21508151 nonsynonymous SNV 0.968 0 5 hm5C_associated_SNPs_31871 0 0 0 0 2 Cytosol 1 0.500231369619002 1 0.999537260761996 hm5C_site_31923 DeepMRMD:1;iRNA_m5C:0.999537260761996 31924 chr2 30756143 30756143 1 + T G READ 30756147 + 30756127 30756167 41 TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTCTCAAAGGT TCAGATTGGAGAAAATGTGCCTCAAAGCGAGTCTCAAAGGT < 41bp 1 0.624163106801504 1 0.596984028816223 experiment 0.751673786396992 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30756147 chr2:30756143 nonsynonymous SNV 0.989 4 17 hm5C_associated_SNPs_31872 0 0 1 0 1 Endoplasmic reticulum 1 0.500231651279143 0.806031942367554 0.999536697441713 hm5C_site_31924 DeepMRMD:0.806031942367554;iRNA_m5C:0.999536697441713 31925 chr19 35741411 35741411 1 + C T READ 35741406 + 35741386 35741426 41 CCCCGGCCAGCGTCGACAACCAGCTCAATGCCCAGCTGGCA CCCCGGCCAGCGTCGACAACCAGCTTAATGCCCAGCTGGCA < 41bp 1 0.562709973566475 1 0.463193297386169 experiment 0.87458005286705 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741406 chr19:35741411 synonymous SNV . 0 26 hm5C_associated_SNPs_31874 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_31925 DeepMRMD:1;iRNA_m5C:0.999536712157814 31926 chr4 6598966 6598966 1 + G A READ 6598971 + 6598951 6598991 41 TGTGGCCGGCCCCCCGTGGGCATCTGGACCCCACCTGGGCC TGTGGCCGGCCCCCCATGGGCATCTGGACCCCACCTGGGCC < 41bp 1 0.300536138889498 1 0.171203255653381 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6598971 chr4:6598966 nonsynonymous SNV 0.000 0 16 hm5C_associated_SNPs_31875 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164390323 1 0.99953671219354 hm5C_site_31926 DeepMRMD:1;iRNA_m5C:0.99953671219354 31927 chr19 40718777 40718777 1 + C T READ 40718786 + 40718766 40718806 41 GGACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTG GGACATGGAGCTGCGGTGGGCCCCCAAAGAAGGAAGAACTG < 41bp 1 0.0528484838781993 1 0.109803110361099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718786 chr19:40718777 nonsynonymous SNV 0.995 4 12 hm5C_associated_SNPs_31876 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_31927 DeepMRMD:1;iRNA_m5C:0.999536712157815 31928 chr19 40718777 40718777 1 + C T READ 40718787 + 40718767 40718807 41 GACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGG GACATGGAGCTGCGGTGGGCCCCCAAAGAAGGAAGAACTGG < 41bp 1 0.211212926997987 1 0.432009905576706 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718787 chr19:40718777 nonsynonymous SNV 0.995 4 11 hm5C_associated_SNPs_31877 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644912198 1 0.999536710175605 hm5C_site_31928 DeepMRMD:1;iRNA_m5C:0.999536710175605 31929 chr19 40718777 40718777 1 + C T READ 40718788 + 40718768 40718808 41 ACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGT ACATGGAGCTGCGGTGGGCCCCCAAAGAAGGAAGAACTGGT < 41bp 1 0.222262217584794 1 0.613302946090698 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718788 chr19:40718777 nonsynonymous SNV 0.995 4 10 hm5C_associated_SNPs_31878 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.773394107818604 0.999536712157815 hm5C_site_31929 DeepMRMD:0.773394107818604;iRNA_m5C:0.999536712157815 31930 chr19 40718777 40718777 1 + C T READ 40718789 + 40718769 40718809 41 CATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTC CATGGAGCTGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTC < 41bp 1 0.201520149184058 1 0.714258849620819 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718789 chr19:40718777 nonsynonymous SNV 0.995 4 9 hm5C_associated_SNPs_31879 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643954768 0.571482300758362 0.999536712090463 hm5C_site_31930 DeepMRMD:0.571482300758362;iRNA_m5C:0.999536712090463 31931 chr19 40718777 40718777 1 + C T READ 40718790 + 40718770 40718810 41 ATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTCG ATGGAGCTGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTCG < 41bp 1 0.377811346475896 1 0.844381213188171 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718790 chr19:40718777 nonsynonymous SNV 0.995 4 8 hm5C_associated_SNPs_31880 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.311237573623658 0.999536712157815 hm5C_site_31931 DeepMRMD:0.311237573623658;iRNA_m5C:0.999536712157815 31932 chr6 161510473 161510473 1 + G A READ 161510492 + 161510472 161510512 41 CGGTCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC CAGTCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC < 41bp 1 0.650873285927368 1 0.450023621320724 experiment 0.698253428145265 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161510492 chr6:161510473 synonymous SNV . 0 2 hm5C_associated_SNPs_31881 0 0 1 0 1 Cytosol 1 0.500231419123061 1 0.999537161753879 hm5C_site_31932 DeepMRMD:1;iRNA_m5C:0.999537161753879 31933 chr5 66432404 66432404 1 + G T READ 66432398 + 66432378 66432418 41 TTCTTCCTTCTAGATGAGATCAACTGGCCTGAGAAGGATGA TTCTTCCTTCTAGATGAGATCAACTGTCCTGAGAAGGATGA < 41bp 1 0.0983398934970076 1 0.109380751848221 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST4 ENSG00000069020 CDS Human protein_coding chr5:66432398 chr5:66432404 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_31883 0 0 1 0 2 Cytosol 1 0.500231489272453 1 0.999537021455094 hm5C_site_31933 DeepMRMD:1;iRNA_m5C:0.999537021455094 31934 chr10 13233336 13233336 1 + A G READ 13233334 + 13233314 13233354 41 TCCTAAGAAGAAGATTCAAACCACTCTGAGTAATCTGGTTG TCCTAAGAAGAAGATTCAAACCGCTCTGAGTAATCTGGTTG < 41bp 1 0.245947674132083 1 0.0471171140670776 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM10 ENSG00000065328 CDS Human protein_coding chr10:13233334 chr10:13233336 nonsynonymous SNV 0.982 2 23 hm5C_associated_SNPs_31884 0 0 1 0 2 Nucleus 1 0.500231643920602 1 0.999536712158795 hm5C_site_31934 DeepMRMD:1;iRNA_m5C:0.999536712158795 31935 chr18 19348680 19348680 1 + A T READ 19348668 + 19348648 19348688 41 AGAGTGGTGCGAGGAGTGGACTGGCAGTGGGAAGATCAAGA AGAGTGGTGCGAGGAGTGGACTGGCAGTGGGATGATCAAGA < 41bp 1 0.636606288996239 1 0.239865213632584 experiment 0.726787422007522 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIB1 ENSG00000101752 CDS Human protein_coding chr18:19348668 chr18:19348680 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_31885 0 0 1 0 1 Nucleus 1 0.500231643996619 1 0.999536712006762 hm5C_site_31935 DeepMRMD:1;iRNA_m5C:0.999536712006762 31936 chr16 58073969 58073969 1 + C T READ 58073989 + 58073969 58074009 41 CCGTTTGATGGCACCGGTGGCTTTCTGGCCCACGCCTATTT TCGTTTGATGGCACCGGTGGCTTTCTGGCCCACGCCTATTT < 41bp 1 0.0659066431717752 1 0.0467514395713806 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMP15 ENSG00000102996 CDS Human protein_coding chr16:58073989 chr16:58073969 nonsynonymous SNV 0.836 4 1 hm5C_associated_SNPs_31886 0 0 0 0 0 Ribosome 1 0.500231496679842 1 0.999537006640315 hm5C_site_31936 DeepMRMD:1;iRNA_m5C:0.999537006640315 31937 chr12 132328570 132328570 1 + G A READ 132328586 + 132328566 132328606 41 CGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCA CGGCACAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCA < 41bp 1 0.332442873625072 1 0.241968899965286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328586 chr12:132328570 synonymous SNV . 0 5 hm5C_associated_SNPs_31887 0 0 0 0 2 Cytosol 1 0.500231643920931 1 0.999536712158138 hm5C_site_31937 DeepMRMD:1;iRNA_m5C:0.999536712158138 31938 chr12 132328570 132328570 1 + G A READ 132328588 + 132328568 132328608 41 GCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCAGA GCACAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCAGA < 41bp 1 0.234152541437567 1 0.200523734092712 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328588 chr12:132328570 synonymous SNV . 0 3 hm5C_associated_SNPs_31888 0 0 0 0 2 Cytosol 1 0.500231643921021 1 0.999536712157957 hm5C_site_31938 DeepMRMD:1;iRNA_m5C:0.999536712157957 31939 chr19 3762714 3762714 1 + C T READ 3762698 + 3762678 3762718 41 GCAAGCTGCCCGCAATACGTCATGGCGACCAAACGCCTTTT GCAAGCTGCCCGCAATACGTCATGGCGACCAAACGCTTTTT < 41bp 1 0.59827015931187 1 0.0986934304237366 experiment 0.80345968137626 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MRPL54 ENSG00000183617 CDS Human protein_coding chr19:3762698 chr19:3762714 nonsynonymous SNV 0.005 2 37 hm5C_associated_SNPs_31889 0 0 1 0 0 Ribosome 1 0.500231644795662 1 0.999536710408676 hm5C_site_31939 DeepMRMD:1;iRNA_m5C:0.999536710408676 31940 chr3 169496569 169496569 1 + G T READ 169496589 + 169496569 169496609 41 GAAATTCATCAGGCTGCTGACTATCTCAAAGTGGAAGAGGT TAAATTCATCAGGCTGCTGACTATCTCAAAGTGGAAGAGGT < 41bp 1 0.11393772756384 1 0.0614917576313019 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYNN ENSG00000085274 CDS Human protein_coding chr3:169496589 chr3:169496569 stopgain 1.000 1 1 hm5C_associated_SNPs_31891 0 0 1 0 1 Nucleus 1 0.500231643941767 1 0.999536712116466 hm5C_site_31940 DeepMRMD:1;iRNA_m5C:0.999536712116466 31941 chr3 47041754 47041754 1 + C T READ 47041773 + 47041753 47041793 41 TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC TTCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC < 41bp 1 0.355399465453429 1 0.652104258537292 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041773 chr3:47041754 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_31892 0 0 1 0 1 Nucleus 1 0.500231643921092 0.695791482925416 0.999536712157815 hm5C_site_31941 DeepMRMD:0.695791482925416;iRNA_m5C:0.999536712157815 31942 chr11 67378475 67378475 1 + G A READ 67378458 + 67378438 67378478 41 CACCAGTTCTCTTCCCATTTCCCTGAAGGAGTGTTTGGCTG CACCAGTTCTCTTCCCATTTCCCTGAAGGAGTGTTTGACTG < 41bp 1 0.133294648651347 1 0.445529371500015 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378458 chr11:67378475 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_31893 0 0 1 0 1 Ribosome 1 0.500231643920237 1 0.999536712159525 hm5C_site_31942 DeepMRMD:1;iRNA_m5C:0.999536712159525 31943 chr11 67378475 67378475 1 + G A READ 67378459 + 67378439 67378479 41 ACCAGTTCTCTTCCCATTTCCCTGAAGGAGTGTTTGGCTGC ACCAGTTCTCTTCCCATTTCCCTGAAGGAGTGTTTGACTGC < 41bp 1 0.227434101102135 1 0.323736548423767 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378459 chr11:67378475 nonsynonymous SNV 0.997 3 37 hm5C_associated_SNPs_31894 0 0 1 0 1 Ribosome 1 0.500229514501953 1 0.999540970996095 hm5C_site_31943 DeepMRMD:1;iRNA_m5C:0.999540970996095 31944 chr11 67378475 67378475 1 + G A READ 67378460 + 67378440 67378480 41 CCAGTTCTCTTCCCATTTCCCTGAAGGAGTGTTTGGCTGCC CCAGTTCTCTTCCCATTTCCCTGAAGGAGTGTTTGACTGCC < 41bp 1 0.623225794148238 1 0.8675137758255 experiment 0.753548411703524 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378460 chr11:67378475 nonsynonymous SNV 0.997 3 36 hm5C_associated_SNPs_31895 0 0 1 0 1 Ribosome 1 0.500231643921092 0.264972448349 0.999536712157815 hm5C_site_31944 DeepMRMD:0.264972448349;iRNA_m5C:0.999536712157815 31945 chr17 27064865 27064865 1 + C T READ 27064861 + 27064841 27064881 41 CCCCCGGGGACCTGTGAGGCCAGCCATCCCACCACCACTGT CCCCCGGGGACCTGTGAGGCCAGCTATCCCACCACCACTGT < 41bp 1 0.485490010150642 1 0.108242005109787 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064861 chr17:27064865 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_31896 0 0 1 0 1 Nucleus 1 0.50023164392107 1 0.99953671215786 hm5C_site_31945 DeepMRMD:1;iRNA_m5C:0.99953671215786 31946 chr11 119045975 119045975 1 + C T READ 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACTTGATCA < 41bp 1 0.325791269025556 1 0.284868389368057 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045975 synonymous SNV . 0 35 hm5C_associated_SNPs_31897 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31946 DeepMRMD:1;iRNA_m5C:0.999536712157815 31947 chr17 38249487 38249487 1 + G A READ 38249489 + 38249469 38249509 41 CGAAGAGCCCGCAGCAGCGTCTCCTGGAGCTGCTCCACCGA CGAAGAGCCCGCAGCAGCATCTCCTGGAGCTGCTCCACCGA < 41bp 1 0.605481351765514 1 0.608536124229431 experiment 0.789037296468972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NR1D1;THRA ENSG00000126351;ENSG00000126368 CDS Human other chr17:38249489 chr17:38249487 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_31898 0 0 0 0 1 unknown 1 0.50023155982626 0.782927751541138 0.99953688034748 hm5C_site_31947 DeepMRMD:0.782927751541138;iRNA_m5C:0.99953688034748 31948 chr2 27656146 27656146 1 + G A READ 27656133 + 27656113 27656153 41 CAGTGCAGGCCTGAGTGTTCCTTCCAGCATGTCGGAGGGGG CAGTGCAGGCCTGAGTGTTCCTTCCAGCATGTCAGAGGGGG < 41bp 1 0.294382482175054 1 0.10794061422348 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27656133 chr2:27656146 synonymous SNV . 0 34 hm5C_associated_SNPs_31899 0 0 1 0 2 Cytosol 1 0.500231659798379 1 0.999536680403242 hm5C_site_31948 DeepMRMD:1;iRNA_m5C:0.999536680403242 31949 chr1 46827422 46827422 1 + T C READ 46827413 + 46827393 46827433 41 TTCCGAAGGGTTTTCATGGACACATTTTGTTTCTTCTCATC TTCCGAAGGGTTTTCATGGACACATTTTGCTTCTTCTCATC < 41bp 1 0.453053361172527 1 0.0388794541358948 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NSUN4 ENSG00000117481 CDS Human protein_coding chr1:46827413 chr1:46827422 synonymous SNV . 0 30 hm5C_associated_SNPs_31900 0 0 1 0 0 Cytosol 1 0.500231607392351 1 0.999536785215297 hm5C_site_31949 DeepMRMD:1;iRNA_m5C:0.999536785215297 31950 chr5 167627021 167627021 1 + C T READ 167627037 + 167627017 167627057 41 CTGTCGAGGGGCATCTCTTCCAGAAGTCATTCCAGGCTTCT CTGTTGAGGGGCATCTCTTCCAGAAGTCATTCCAGGCTTCT < 41bp 1 0.571611320149176 1 0.623659133911133 experiment 0.856777359701648 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TENM2 ENSG00000145934 CDS Human protein_coding chr5:167627037 chr5:167627021 synonymous SNV . 0 5 hm5C_associated_SNPs_31901 0 0 0 0 0 exosome 1 0.500231450990437 0.752681732177734 0.999537098019125 hm5C_site_31950 DeepMRMD:0.752681732177734;iRNA_m5C:0.999537098019125 31951 chr12 56504362 56504362 1 + G T READ 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGATAACCACTATTTACAAACGAGACCCCTCTAAACA < 41bp 1 0.303507244903103 1 0.156038284301758 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504362 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_31902 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31951 DeepMRMD:1;iRNA_m5C:0.999536712157815 31952 chr21 47786919 47786919 1 + G A READ 47786911 + 47786891 47786931 41 TGTGGAAAAAGGACTCTCTTCACCAAACGATTTTGACTCAA TGTGGAAAAAGGACTCTCTTCACCAAACAATTTTGACTCAA < 41bp 1 0.48886818897173 1 0.793717503547668 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47786911 chr21:47786919 synonymous SNV . 0 29 hm5C_associated_SNPs_31903 0 0 1 0 0 Exosome 1 0.500230027835594 0.412564992904664 0.999539944328812 hm5C_site_31952 DeepMRMD:0.412564992904664;iRNA_m5C:0.999539944328812 31953 chr10 105172967 105172967 1 + G A READ 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTCCTACAGCCTGGACGCCCACTCACCCAACTCTCTTGCC < 41bp 1 0.108813157227193 1 0.0645788908004761 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172967 nonsynonymous SNV 0.002 0 30 hm5C_associated_SNPs_31904 0 0 1 0 1 Nucleus 1 0.50023164392111 1 0.99953671215778 hm5C_site_31953 DeepMRMD:1;iRNA_m5C:0.99953671215778 31954 chr19 10571763 10571763 1 + G A READ 10571761 + 10571741 10571781 41 ATCACCCTGGGGTCTCCAACCAGTTCCTCATCAACACCAGT ATCACCCTGGGGTCTCCAACCAATTCCTCATCAACACCAGT < 41bp 1 0.071150867334094 1 0.550095677375793 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10571761 chr19:10571763 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_31905 0 0 0 0 2 chromatin 1 0.500231644687165 0.899808645248414 0.999536710625669 hm5C_site_31954 DeepMRMD:0.899808645248414;iRNA_m5C:0.999536710625669 31955 chrX 205504 205504 1 + C T READ 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCACGTGCCCTGTCGTGCTGAA < 41bp 1 0.57269343416237 1 0.0922767817974091 experiment 0.854613131675261 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205504 nonsynonymous SNV 0.009 3 25 hm5C_associated_SNPs_31906 0 0 1 0 1 Cytosol 1 0.500231644128993 1 0.999536711742015 hm5C_site_31955 DeepMRMD:1;iRNA_m5C:0.999536711742015 31956 chr17 4720029 4720029 1 + C T READ 4720020 + 4720000 4720040 41 TTATCACCAAGGACTGGGTGCAGCTGGACCGGCCTTTCGAA TTATCACCAAGGACTGGGTGCAGCTGGACTGGCCTTTCGAA < 41bp 1 0.275208657485837 1 0.176264971494675 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4720020 chr17:4720029 nonsynonymous SNV 0.990 2 30 hm5C_associated_SNPs_31907 0 0 1 0 1 Cytosol 1 0.500231648032951 1 0.999536703934099 hm5C_site_31956 DeepMRMD:1;iRNA_m5C:0.999536703934099 31957 chrX 153688713 153688713 1 + C T READ 153688731 + 153688711 153688751 41 TGCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGC TGTGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGC < 41bp 1 0.0892265348828505 1 0.0471287071704865 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688731 chrX:153688713 nonsynonymous SNV 0.994 3 3 hm5C_associated_SNPs_31908 0 0 0 0 0 Endoplasmic reticulum 1 0.500231580160963 1 0.999536839678073 hm5C_site_31957 DeepMRMD:1;iRNA_m5C:0.999536839678073 31958 chrX 153688713 153688713 1 + C T READ 153688732 + 153688712 153688752 41 GCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCT GTGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCT < 41bp 1 0.0249553203298048 1 0.034318596124649 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688732 chrX:153688713 nonsynonymous SNV 0.994 3 2 hm5C_associated_SNPs_31909 0 0 0 0 0 Endoplasmic reticulum 1 0.50023188128575 1 0.9995362374285 hm5C_site_31958 DeepMRMD:1;iRNA_m5C:0.9995362374285 31959 chrX 153688713 153688713 1 + C T READ 153688733 + 153688713 153688753 41 CGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCTG TGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCTG < 41bp 1 0.253241296014876 1 0.149886906147003 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688733 chrX:153688713 nonsynonymous SNV 0.994 3 1 hm5C_associated_SNPs_31910 0 0 0 0 0 Endoplasmic reticulum 1 0.500231619917044 1 0.999536760165911 hm5C_site_31959 DeepMRMD:1;iRNA_m5C:0.999536760165911 31960 chr10 118313342 118313342 1 + G A READ 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACCATTGGACACATCACAGGTT < 41bp 1 0.132276449359028 1 0.0838519334793091 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313342 nonsynonymous SNV 0.479 5 30 hm5C_associated_SNPs_31911 0 0 0 0 1 unknown 1 0.500230124715327 1 0.999539750569346 hm5C_site_31960 DeepMRMD:1;iRNA_m5C:0.999539750569346 31961 chr10 118313342 118313342 1 + G A READ 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACCATTGGACACATCACAGGTTG < 41bp 1 0.454529340690501 1 0.167170166969299 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313342 nonsynonymous SNV 0.479 5 29 hm5C_associated_SNPs_31912 0 0 0 0 1 unknown 1 0.500231643921085 1 0.999536712157829 hm5C_site_31961 DeepMRMD:1;iRNA_m5C:0.999536712157829 31962 chr22 44330507 44330507 1 + C T READ 44330489 + 44330469 44330509 41 GCTTGCTTTGCTCACAGGTGCTGGGAGAGATATGCCTTCGA GCTTGCTTTGCTCACAGGTGCTGGGAGAGATATGCCTTTGA < 41bp 1 0.657131204020224 1 0.625377476215363 experiment 0.685737591959553 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44330489 chr22:44330507 stopgain 0.391 0 39 hm5C_associated_SNPs_31913 0 0 1 0 1 cytosol 1 0.50023166875336 0.749245047569274 0.99953666249328 hm5C_site_31962 DeepMRMD:0.749245047569274;iRNA_m5C:0.99953666249328 31963 chr11 65062101 65062101 1 + C A READ 65062109 + 65062089 65062129 41 CTGCTTTTCCACCTGGGGGCCGAGGAGATCAGTAGGTAAGA CTGCTTTTCCACATGGGGGCCGAGGAGATCAGTAGGTAAGA < 41bp 1 0.497343279425625 1 0.719063878059387 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65062109 chr11:65062101 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_31914 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921083 0.561872243881226 0.999536712157834 hm5C_site_31963 DeepMRMD:0.561872243881226;iRNA_m5C:0.999536712157834 31964 chr19 49644753 49644753 1 + C T READ 49644738 + 49644718 49644758 41 GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAG GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGATCGAAG < 41bp 1 0.169842002713876 1 0.173191606998444 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644738 chr19:49644753 synonymous SNV . 0 36 hm5C_associated_SNPs_31915 0 0 0 0 2 Cytosol 1 0.500231643921205 1 0.99953671215759 hm5C_site_31964 DeepMRMD:1;iRNA_m5C:0.99953671215759 31965 chr19 46887100 46887100 1 + G A READ 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCAAGCTCAACGGTTTACCCTCGGAGAC < 41bp 1 0.585198487500381 1 0.228063553571701 experiment 0.829603024999239 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887100 nonsynonymous SNV 0.998 0 16 hm5C_associated_SNPs_31916 0 0 1 0 3 Ribosome 1 0.500231636135496 1 0.999536727729009 hm5C_site_31965 DeepMRMD:1;iRNA_m5C:0.999536727729009 31966 chr2 11300652 11300652 1 + G A READ 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT CGCTGACCTACCTGGAATACCCCATCCTCATCGCGCAAGGT < 41bp 1 0.223799655282587 1 0.20813649892807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300652 synonymous SNV . 0 17 hm5C_associated_SNPs_31917 0 0 1 0 2 Ribosome 1 0.500231648645994 1 0.999536702708012 hm5C_site_31966 DeepMRMD:1;iRNA_m5C:0.999536702708012 31967 chr19 806468 806468 1 + C T READ 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGTGG < 41bp 1 0.058145924467699 1 0.0848051309585571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806468 nonsynonymous SNV 0.002 1 39 hm5C_associated_SNPs_31918 0 0 1 0 2 Cytosol 1 0.500231643952181 1 0.999536712095639 hm5C_site_31967 DeepMRMD:1;iRNA_m5C:0.999536712095639 31968 chr19 806468 806468 1 + C T READ 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGTGGC < 41bp 1 0.164238978359416 1 0.0773604214191437 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806468 nonsynonymous SNV 0.002 1 38 hm5C_associated_SNPs_31919 0 0 1 0 2 Cytosol 1 0.500231643920882 1 0.999536712158235 hm5C_site_31968 DeepMRMD:1;iRNA_m5C:0.999536712158235 31969 chr6 163984542 163984542 1 + G A READ 163984557 + 163984537 163984577 41 CCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT CCTGCATACTCCTACGCCAGCTGGCCCTACCATAATGCCTT < 41bp 1 0.388291942835378 1 0.131892293691635 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QKI ENSG00000112531 CDS Human protein_coding chr6:163984557 chr6:163984542 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_31920 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31969 DeepMRMD:1;iRNA_m5C:0.999536712157815 31970 chr17 79990843 79990843 1 + C A READ 79990825 + 79990805 79990845 41 TCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTGCTTCTC TCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTGCTTATC < 41bp 1 0.157017178472107 1 0.0413037240505219 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990825 chr17:79990843 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_31921 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31970 DeepMRMD:1;iRNA_m5C:0.999536712157815 31971 chr12 118462802 118462802 1 + G A READ 118462801 + 118462781 118462821 41 GTTCCCCGCCTGGAACATGTCGTGGAAGAAGAGAAGTGAGT GTTCCCCGCCTGGAACATGTCATGGAAGAAGAGAAGTGAGT < 41bp 1 0.689695700664139 1 0.0993531048297882 experiment 0.620608598671721 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RFC5 ENSG00000111445 CDS Human protein_coding chr12:118462801 chr12:118462802 nonsynonymous SNV 0.748 1 22 hm5C_associated_SNPs_31922 0 0 1 0 1 Ribosome 1 0.500231643814708 1 0.999536712370584 hm5C_site_31971 DeepMRMD:1;iRNA_m5C:0.999536712370584 31972 chr11 214322 214322 1 + C T READ 214325 + 214305 214345 41 TATGGAGCAGCAGCTCTCCTCGGACCCTGACTCGGACCCTG TATGGAGCAGCAGCTCTTCTCGGACCCTGACTCGGACCCTG < 41bp 1 0.563030839507137 1 0.76505571603775 experiment 0.873938320985725 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:214325 chr11:214322 nonsynonymous SNV 0.999 3 18 hm5C_associated_SNPs_31923 0 0 1 0 1 Ribosome 1 0.500231643921094 0.4698885679245 0.999536712157812 hm5C_site_31972 DeepMRMD:0.4698885679245;iRNA_m5C:0.999536712157812 31973 chr1 145663182 145663182 1 + G A READ 145663167 + 145663147 145663187 41 GGTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTT GGTCTTTACTAGCTTTGGGGCCATTTGGATCACACAATGTT < 41bp 1 0.0220441443782624 1 0.0412339270114899 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663167 chr1:145663182 synonymous SNV . 0 36 hm5C_associated_SNPs_31924 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_31973 DeepMRMD:1;iRNA_m5C:0.999536712157815 31974 chr1 145663182 145663182 1 + G A READ 145663168 + 145663148 145663188 41 GTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTTT GTCTTTACTAGCTTTGGGGCCATTTGGATCACACAATGTTT < 41bp 1 0.0242630493699257 1 0.0626689195632935 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF115 ENSG00000121848 CDS Human other chr1:145663168 chr1:145663182 synonymous SNV . 0 35 hm5C_associated_SNPs_31925 0 0 1 0 1 Nucleus 1 0.500231643921333 1 0.999536712157333 hm5C_site_31974 DeepMRMD:1;iRNA_m5C:0.999536712157333 31975 chr8 59483459 59483459 1 + T G READ 59483471 + 59483451 59483491 41 AACTGCTTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGT AACTGCTTGTTCTGCAAACCCTGCCAATCCAGCAATTTTGT < 41bp 1 0.476288109354997 1 0.0304456353187561 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SDCBP ENSG00000137575 CDS Human protein_coding chr8:59483471 chr8:59483459 nonsynonymous SNV 0.964 1 9 hm5C_associated_SNPs_31926 0 0 1 0 2 Ribosome 1 0.500231630012993 1 0.999536739974013 hm5C_site_31975 DeepMRMD:1;iRNA_m5C:0.999536739974013 31976 chr17 75494690 75494690 1 + G A READ 75494704 + 75494684 75494724 41 AGCAGCGCCATGGCCAACGGCATGGAGGAGAAGGAGCCAGA AGCAGCACCATGGCCAACGGCATGGAGGAGAAGGAGCCAGA < 41bp 1 0.419143785579974 1 0.226372420787811 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 CDS Human protein_coding chr17:75494704 chr17:75494690 nonsynonymous SNV 0.334 0 7 hm5C_associated_SNPs_31927 0 0 1 0 1 Ribosome 1 0.500232358670211 1 0.999535282659578 hm5C_site_31976 DeepMRMD:1;iRNA_m5C:0.999535282659578 31977 chr9 131455933 131455933 1 + C T READ 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGACGAAACGTTTGAGTCAAACGCAGAAT < 41bp 1 0.16088944563862 1 0.0806401968002319 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455933 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_31928 0 0 1 0 1 Ribosome 1 0.500231643745952 1 0.999536712508095 hm5C_site_31977 DeepMRMD:1;iRNA_m5C:0.999536712508095 31978 chr9 131455947 131455947 1 + A G READ 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGGAT < 41bp 1 0.128668598578335 1 0.129589676856995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455947 nonsynonymous SNV 0.998 1 39 hm5C_associated_SNPs_31930 0 0 1 1 1 Ribosome 1 0.500231640721218 1 0.999536718557565 hm5C_site_31978 DeepMRMD:1;iRNA_m5C:0.999536718557565 31979 chr2 235943704 235943704 1 + G A READ 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAAAGGGGACC < 41bp 1 0.222149744840994 1 0.203001111745834 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943704 nonsynonymous SNV 0.995 4 33 hm5C_associated_SNPs_31931 0 0 1 0 1 cytosol 1 0.500231643926328 1 0.999536712147343 hm5C_site_31979 DeepMRMD:1;iRNA_m5C:0.999536712147343 31980 chr19 17615392 17615392 1 + C T READ 17615397 + 17615377 17615417 41 GAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTCGCCCT GAGGCAGTCTACACTTGCATCTGCTCGGGCGCCTTCGCCCT < 41bp 1 0.334033136488903 1 0.0821108818054199 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17615397 chr19:17615392 nonsynonymous SNV 0.285 2 16 hm5C_associated_SNPs_31932 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921192 1 0.999536712157616 hm5C_site_31980 DeepMRMD:1;iRNA_m5C:0.999536712157616 31981 chr18 8825456 8825456 1 + G A READ 8825449 + 8825429 8825469 41 GGCCTGCCAGACCAATGGGTCCCGGACGATGGGGACCCAGA GGCCTGCCAGACCAATGGGTCCCGGACAATGGGGACCCAGA < 41bp 1 0.142291978600616 1 0.0663088858127594 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825449 chr18:8825456 synonymous SNV . 0 28 hm5C_associated_SNPs_31933 0 0 0 0 0 Nucleus 1 0.500231644233177 1 0.999536711533646 hm5C_site_31981 DeepMRMD:1;iRNA_m5C:0.999536711533646 31982 chr18 8825456 8825456 1 + G A READ 8825450 + 8825430 8825470 41 GCCTGCCAGACCAATGGGTCCCGGACGATGGGGACCCAGAC GCCTGCCAGACCAATGGGTCCCGGACAATGGGGACCCAGAC < 41bp 1 0.366875540865536 1 0.289288878440857 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825450 chr18:8825456 synonymous SNV . 0 27 hm5C_associated_SNPs_31934 0 0 0 0 0 Nucleus 1 0.50023164384055 1 0.999536712318901 hm5C_site_31982 DeepMRMD:1;iRNA_m5C:0.999536712318901 31983 chr18 8825456 8825456 1 + G A READ 8825451 + 8825431 8825471 41 CCTGCCAGACCAATGGGTCCCGGACGATGGGGACCCAGACT CCTGCCAGACCAATGGGTCCCGGACAATGGGGACCCAGACT < 41bp 1 0.152930684220137 1 0.35872894525528 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825451 chr18:8825456 synonymous SNV . 0 26 hm5C_associated_SNPs_31935 0 0 0 0 0 Nucleus 1 0.500231267722573 1 0.999537464554854 hm5C_site_31983 DeepMRMD:1;iRNA_m5C:0.999537464554854 31984 chr18 8825456 8825456 1 + G A READ 8825464 + 8825444 8825484 41 TGGGTCCCGGACGATGGGGACCCAGACTGTTCAGACCATCA TGGGTCCCGGACAATGGGGACCCAGACTGTTCAGACCATCA < 41bp 1 0.0362894859509526 1 0.0796988904476166 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825464 chr18:8825456 synonymous SNV . 0 13 hm5C_associated_SNPs_31936 0 0 0 0 0 Nucleus 1 0.500231643921097 1 0.999536712157806 hm5C_site_31984 DeepMRMD:1;iRNA_m5C:0.999536712157806 31985 chr18 8825456 8825456 1 + G A READ 8825465 + 8825445 8825485 41 GGGTCCCGGACGATGGGGACCCAGACTGTTCAGACCATCAG GGGTCCCGGACAATGGGGACCCAGACTGTTCAGACCATCAG < 41bp 1 0.253938488623584 1 0.148261964321136 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825465 chr18:8825456 synonymous SNV . 0 12 hm5C_associated_SNPs_31937 0 0 0 0 0 Nucleus 1 0.500232194195535 1 0.999535611608931 hm5C_site_31985 DeepMRMD:1;iRNA_m5C:0.999535611608931 31986 chr18 8825456 8825456 1 + G A READ 8825466 + 8825446 8825486 41 GGTCCCGGACGATGGGGACCCAGACTGTTCAGACCATCAGT GGTCCCGGACAATGGGGACCCAGACTGTTCAGACCATCAGT < 41bp 1 0.177443807142638 1 0.531761288642883 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825466 chr18:8825456 synonymous SNV . 0 11 hm5C_associated_SNPs_31938 0 0 0 0 0 Nucleus 1 0.500231643921092 0.936477422714234 0.999536712157815 hm5C_site_31986 DeepMRMD:0.936477422714234;iRNA_m5C:0.999536712157815 31987 chr2 231327222 231327222 1 + G T READ 231327230 + 231327210 231327250 41 TCTCAGCACCGAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG TCTCAGCACCGATAAGTGAGCCTGGTAAGGAAGTTTGGGAG < 41bp 1 0.393853756792165 1 0.372922480106354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SP100 ENSG00000067066 CDS Human protein_coding chr2:231327230 chr2:231327222 nonsynonymous SNV 0.000 2 13 hm5C_associated_SNPs_31939 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_31987 DeepMRMD:1;iRNA_m5C:0.999536712157815 31988 chr17 20163524 20163524 1 + C G READ 20163528 + 20163508 20163548 41 GGAAAGAAAAGACCCTCTGGCAGCCTTGGCCCGGGAATACG GGAAAGAAAAGACCCTGTGGCAGCCTTGGCCCGGGAATACG < 41bp 1 0.243709505032289 1 0.160536706447601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20163528 chr17:20163524 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_31940 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_31988 DeepMRMD:1;iRNA_m5C:0.999536712157814 31989 chr2 220350102 220350102 1 + C T READ 220350113 + 220350093 220350133 41 CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT CCGCTGGGGTTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT < 41bp 1 0.443291093202835 1 0.698075890541077 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220350113 chr2:220350102 synonymous SNV . 0 10 hm5C_associated_SNPs_31941 0 0 0 0 2 Nucleus 1 0.500231643921092 0.603848218917846 0.999536712157815 hm5C_site_31989 DeepMRMD:0.603848218917846;iRNA_m5C:0.999536712157815 31990 chr9 131345016 131345016 1 + G A READ 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GCGTCACCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC < 41bp 1 0.126981438347902 1 0.11270147562027 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345016 nonsynonymous SNV 0.991 4 6 hm5C_associated_SNPs_31942 0 0 1 0 1 Nucleus 1 0.50023164392183 1 0.999536712156339 hm5C_site_31990 DeepMRMD:1;iRNA_m5C:0.999536712156339 31991 chr22 42280875 42280875 1 + G T READ 42280873 + 42280853 42280893 41 TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT TCCTGCAGGATCCGCCTGTTCCTATGTACACATGGCGTTGT < 41bp 1 0.100089012737509 1 0.0580759942531586 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42280873 chr22:42280875 nonsynonymous SNV 0.963 3 23 hm5C_associated_SNPs_31943 0 0 1 0 1 Ribosome 1 0.500231643924862 1 0.999536712150277 hm5C_site_31991 DeepMRMD:1;iRNA_m5C:0.999536712150277 31992 chr12 104056703 104056703 1 + G T READ 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGT < 41bp 1 0.164258632313046 1 0.231939345598221 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056703 nonsynonymous SNV 0.913 5 41 hm5C_associated_SNPs_31944 0 0 0 0 2 nucleoplasm 1 0.500231637357626 1 0.999536725284747 hm5C_site_31992 DeepMRMD:1;iRNA_m5C:0.999536725284747 31993 chr19 15222232 15222232 1 + G A READ 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCTGAGGACCTGTACCCCAATATCAATGT < 41bp 1 0.0590084381385809 1 0.0266901552677155 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222232 nonsynonymous SNV 0.993 4 31 hm5C_associated_SNPs_31945 0 0 0 0 1 exosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_31993 DeepMRMD:1;iRNA_m5C:0.999536712157818 31994 chr14 64445700 64445700 1 + G T READ 64445696 + 64445676 64445716 41 TGGAACATTAAATATGGGAGCAGAGAATCTGTGGAATTATT TGGAACATTAAATATGGGAGCAGATAATCTGTGGAATTATT < 41bp 1 0.0534166451705512 1 0.228497564792633 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64445696 chr14:64445700 stopgain 0.983 0 25 hm5C_associated_SNPs_31946 0 0 1 0 1 Nucleus 1 0.500231650247651 1 0.999536699504698 hm5C_site_31994 DeepMRMD:1;iRNA_m5C:0.999536699504698 31995 chr4 6925434 6925434 1 + G A READ 6925415 + 6925395 6925435 41 CGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTGCGCGC CGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTGCGCAC < 41bp 1 0.0264853418698675 1 0.0222581624984741 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:6925415 chr4:6925434 synonymous SNV . 0 40 hm5C_associated_SNPs_31947 0 0 1 0 0 Cytosol 1 0.500183463729435 1 0.999633072541129 hm5C_site_31995 DeepMRMD:1;iRNA_m5C:0.999633072541129 31996 chr12 64878186 64878186 1 + C T READ 64878177 + 64878157 64878197 41 GGCGACGCTTAGTCTTAGAACCTGGAAGGCTGGCACAACAT GGCGACGCTTAGTCTTAGAACCTGGAAGGTTGGCACAACAT < 41bp 1 0.311678560896627 1 0.366330921649933 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBK1 ENSG00000183735 CDS Human protein_coding chr12:64878177 chr12:64878186 synonymous SNV . 0 30 hm5C_associated_SNPs_31948 0 0 1 0 1 chromatin 1 0.500231643920497 1 0.999536712159005 hm5C_site_31996 DeepMRMD:1;iRNA_m5C:0.999536712159005 31997 chr11 66063002 66063002 1 + C T READ 66063004 + 66062984 66063024 41 AGCGGGGGGCCGCTGGGGCGCCGTGGAGAGGACACGGAACC AGCGGGGGGCCGCTGGGGTGCCGTGGAGAGGACACGGAACC < 41bp 1 0.378064097717461 1 0.455491483211517 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66063004 chr11:66063002 nonsynonymous SNV 0.877 0 19 hm5C_associated_SNPs_31950 0 0 0 0 0 exosome 1 0.500231643919983 1 0.999536712160033 hm5C_site_31997 DeepMRMD:1;iRNA_m5C:0.999536712160033 31998 chr1 156255360 156255360 1 + G A READ 156255378 + 156255358 156255398 41 CCGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT CCAAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT < 41bp 1 0.360567608035976 1 0.12798735499382 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255378 chr1:156255360 nonsynonymous SNV 0.050 0 3 hm5C_associated_SNPs_31951 0 0 0 0 1 cytosol 1 0.500231643921114 1 0.999536712157772 hm5C_site_31998 DeepMRMD:1;iRNA_m5C:0.999536712157772 31999 chr16 24826591 24826591 1 + C T READ 24826598 + 24826578 24826618 41 CCACGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTG CCACGTGCCAAATTGCCTAACGGCTCTAGCAGTGTTAATTG < 41bp 1 0.406849648736878 1 0.075310617685318 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24826598 chr16:24826591 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_31952 0 0 1 0 1 Nucleus 1 0.500231644052243 1 0.999536711895515 hm5C_site_31999 DeepMRMD:1;iRNA_m5C:0.999536711895515 32000 chr20 368896 368896 1 + G A READ 368903 + 368883 368923 41 GAGGAGGGCGGGCGGGCCTACCAGGCCCTGCACTGCCCTAC GAGGAGGGCGGGCAGGCCTACCAGGCCCTGCACTGCCCTAC < 41bp 1 0.650734400522732 1 0.722356677055359 experiment 0.698531198954536 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIB3 ENSG00000101255 CDS Human protein_coding chr20:368903 chr20:368896 nonsynonymous SNV 0.002 0 14 hm5C_associated_SNPs_31953 0 0 1 0 1 Ribosome 1 0.500231643921087 0.555286645889282 0.999536712157826 hm5C_site_32000 DeepMRMD:0.555286645889282;iRNA_m5C:0.999536712157826 32001 chr11 35684870 35684870 1 + G A READ 35684862 + 35684842 35684882 41 CCACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGG CCACGGCTCCCAGGCCTGGACCCCGCCAACTGACGGAGAGG < 41bp 1 0.361491900554038 1 0.378518462181091 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684862 chr11:35684870 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_31955 0 0 1 0 0 Ribosome 1 0.500231643920386 1 0.999536712159227 hm5C_site_32001 DeepMRMD:1;iRNA_m5C:0.999536712159227 32002 chr11 35684870 35684870 1 + G A READ 35684863 + 35684843 35684883 41 CACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGGG CACGGCTCCCAGGCCTGGACCCCGCCAACTGACGGAGAGGG < 41bp 1 0.196237505077877 1 0.26306426525116 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684863 chr11:35684870 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_31956 0 0 1 0 0 Ribosome 1 0.500231644985813 1 0.999536710028373 hm5C_site_32002 DeepMRMD:1;iRNA_m5C:0.999536710028373 32003 chr11 35684870 35684870 1 + G A READ 35684864 + 35684844 35684884 41 ACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGGGG ACGGCTCCCAGGCCTGGACCCCGCCAACTGACGGAGAGGGG < 41bp 1 0.249650088450853 1 0.580608606338501 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684864 chr11:35684870 nonsynonymous SNV 0.000 0 27 hm5C_associated_SNPs_31957 0 0 1 0 0 Ribosome 1 0.500231643909267 0.838782787322998 0.999536712181466 hm5C_site_32003 DeepMRMD:0.838782787322998;iRNA_m5C:0.999536712181466 32004 chr22 43558927 43558927 1 + C T READ 43558925 + 43558905 43558945 41 TACCTGGCCTGGCTGGCCTTCACGACCACACTCAACTACTG TACCTGGCCTGGCTGGCCTTCATGACCACACTCAACTACTG < 41bp 1 0.673869802398899 1 0.462502956390381 experiment 0.652260395202203 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPO ENSG00000100300 CDS Human protein_coding chr22:43558925 chr22:43558927 nonsynonymous SNV 0.028 2 23 hm5C_associated_SNPs_31959 0 0 1 0 0 Ribosome 1 0.500231643922286 1 0.999536712155429 hm5C_site_32004 DeepMRMD:1;iRNA_m5C:0.999536712155429 32005 chr2 113260544 113260544 1 + C A READ 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGATTCGGACTGCTTCAGAACCATATCATGTTGATA < 41bp 1 0.520886723950539 1 0.702484130859375 experiment 0.958226552098921 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260544 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_31961 0 0 1 0 1 Cytosol 1 0.500231624324479 0.59503173828125 0.999536751351043 hm5C_site_32005 DeepMRMD:0.59503173828125;iRNA_m5C:0.999536751351043 32006 chr7 2686577 2686577 1 + C T READ 2686570 + 2686550 2686590 41 TTCTACTCCTTCTGGCTGTGCTGCCGGCGGCGCAAGAGCGA TTCTACTCCTTCTGGCTGTGCTGCCGGTGGCGCAAGAGCGA < 41bp 1 0.353949127043968 1 0.398040890693665 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686570 chr7:2686577 nonsynonymous SNV 0.994 3 28 hm5C_associated_SNPs_31962 0 0 1 0 2 Ribosome 1 0.500231644318358 1 0.999536711363285 hm5C_site_32006 DeepMRMD:1;iRNA_m5C:0.999536711363285 32007 chr1 10165584 10165584 1 + T G READ 10165581 + 10165561 10165601 41 GCCTTTCCAACAGTATTCTCCGATTTTAAGGACTTGATTGG GCCTTTCCAACAGTATTCTCCGAGTTTAAGGACTTGATTGG < 41bp 1 0.286369288740764 1 0.308280736207962 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBE4B ENSG00000130939 CDS Human protein_coding chr1:10165581 chr1:10165584 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_31965 0 0 1 0 1 Cytosol 1 0.500231643707931 1 0.999536712584139 hm5C_site_32007 DeepMRMD:1;iRNA_m5C:0.999536712584139 32008 chr16 23578364 23578364 1 + G A READ 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAAAAAATGTGGTCAGTGAACCTATCAAAGGACATGAAGAC < 41bp 1 0.0694123561572772 1 0.0969356298446655 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578364 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_31966 0 0 1 0 2 Ribosome 1 0.500231643921286 1 0.999536712157427 hm5C_site_32008 DeepMRMD:1;iRNA_m5C:0.999536712157427 32009 chr9 35396474 35396474 1 + G A READ 35396475 + 35396455 35396495 41 CTTTCTCCCTACCACTAGAGCATGAGAAAGACCACCTGTGT CTTTCTCCCTACCACTAGAACATGAGAAAGACCACCTGTGT < 41bp 1 0.375427168843348 1 0.316778481006622 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNC13B ENSG00000198722 CDS Human protein_coding chr9:35396475 chr9:35396474 synonymous SNV . 0 20 hm5C_associated_SNPs_31967 0 0 0 0 1 Cytosol 1 0.500231644171845 1 0.999536711656309 hm5C_site_32009 DeepMRMD:1;iRNA_m5C:0.999536711656309 32010 chr1 46775975 46775975 1 + C T READ 46775983 + 46775963 46776003 41 ACTTCTTGCATGCGAGGGACCATTGCGTAAGTCAGTGGGAA ACTTCTTGCATGTGAGGGACCATTGCGTAAGTCAGTGGGAA < 41bp 1 0.210131060217676 1 0.178663730621338 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UQCRH ENSG00000173660 CDS Human protein_coding chr1:46775983 chr1:46775975 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_31968 0 0 1 0 1 Ribosome 1 0.500231649336191 1 0.999536701327617 hm5C_site_32010 DeepMRMD:1;iRNA_m5C:0.999536701327617 32011 chrX 48457274 48457274 1 + G A READ 48457272 + 48457252 48457292 41 CCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTG CCAGCGCTACGGGCCCCTCTCCAAGCCAGGCAGTGCTCGTG < 41bp 1 0.545788418084406 1 0.863923907279968 experiment 0.908423163831187 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457272 chrX:48457274 nonsynonymous SNV 0.936 1 23 hm5C_associated_SNPs_31970 0 0 1 0 1 Ribosome 1 0.500231643921098 0.272152185440064 0.999536712157804 hm5C_site_32011 DeepMRMD:0.272152185440064;iRNA_m5C:0.999536712157804 32012 chrX 48457274 48457274 1 + G A READ 48457273 + 48457253 48457293 41 CAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTGC CAGCGCTACGGGCCCCTCTCCAAGCCAGGCAGTGCTCGTGC < 41bp 1 0.60917703672331 1 0.312469452619553 experiment 0.781645926553379 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457273 chrX:48457274 nonsynonymous SNV 0.936 1 22 hm5C_associated_SNPs_31971 0 0 1 0 1 Ribosome 1 0.500231643921199 1 0.999536712157602 hm5C_site_32012 DeepMRMD:1;iRNA_m5C:0.999536712157602 32013 chr1 22838407 22838407 1 + C A READ 22838392 + 22838372 22838412 41 TTCATCTGTAAGGCCTGCGACAAAAGCTTCCATTTCTACTG TTCATCTGTAAGGCCTGCGACAAAAGCTTCCATTTATACTG < 41bp 1 0.419151309617499 1 0.351736485958099 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22838392 chr1:22838407 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_31972 0 0 1 0 0 Nucleus 1 0.500231648731968 1 0.999536702536064 hm5C_site_32013 DeepMRMD:1;iRNA_m5C:0.999536702536064 32014 chr1 203787701 203787701 1 + G A READ 203787706 + 203787686 203787726 41 ATTTGTTTACAGGGTGACAGCTGCCCATTCCGTCACTGTGA ATTTGTTTACAGGGTAACAGCTGCCCATTCCGTCACTGTGA < 41bp 1 0.419359804309574 1 0.193411409854889 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203787706 chr1:203787701 nonsynonymous SNV 0.997 1 16 hm5C_associated_SNPs_31973 0 0 1 0 0 Nucleus 1 0.500231643920307 1 0.999536712159386 hm5C_site_32014 DeepMRMD:1;iRNA_m5C:0.999536712159386 32015 chr1 203787701 203787701 1 + G A READ 203787710 + 203787690 203787730 41 GTTTACAGGGTGACAGCTGCCCATTCCGTCACTGTGAAGCT GTTTACAGGGTAACAGCTGCCCATTCCGTCACTGTGAAGCT < 41bp 1 0.0619782951788501 1 0.0980340838432312 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203787710 chr1:203787701 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_31974 0 0 1 0 0 Nucleus 1 0.500231643922602 1 0.999536712154796 hm5C_site_32015 DeepMRMD:1;iRNA_m5C:0.999536712154796 32016 chr1 203787701 203787701 1 + G A READ 203787711 + 203787691 203787731 41 TTTACAGGGTGACAGCTGCCCATTCCGTCACTGTGAAGCTG TTTACAGGGTAACAGCTGCCCATTCCGTCACTGTGAAGCTG < 41bp 1 0.0480330091813197 1 0.0881686806678772 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203787711 chr1:203787701 nonsynonymous SNV 0.997 1 11 hm5C_associated_SNPs_31975 0 0 1 0 0 Nucleus 1 0.500231656323473 1 0.999536687353055 hm5C_site_32016 DeepMRMD:1;iRNA_m5C:0.999536687353055 32017 chr9 37357108 37357108 1 + C A READ 37357097 + 37357077 37357117 41 TCTCCTGGCAGTTTTAAAACCCAGAAGCCTTCTAAGCCCTT TCTCCTGGCAGTTTTAAAACCCAGAAGCCTTATAAGCCCTT < 41bp 1 0.548123497762826 1 0.444860279560089 experiment 0.903753004474348 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZCCHC7 ENSG00000147905 CDS Human protein_coding chr9:37357097 chr9:37357108 nonsynonymous SNV 0.000 0 32 hm5C_associated_SNPs_31976 0 0 1 0 0 Cytosol 1 0.500231643921059 1 0.999536712157882 hm5C_site_32017 DeepMRMD:1;iRNA_m5C:0.999536712157882 32018 chr9 37357108 37357108 1 + C A READ 37357114 + 37357094 37357134 41 AACCCAGAAGCCTTCTAAGCCCTTTCACCGTTCATCACATT AACCCAGAAGCCTTATAAGCCCTTTCACCGTTCATCACATT < 41bp 1 0.0214151011774225 1 0.0628296434879303 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZCCHC7 ENSG00000147905 CDS Human protein_coding chr9:37357114 chr9:37357108 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_31977 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_32018 DeepMRMD:1;iRNA_m5C:0.999536712157816 32019 chr2 220072092 220072092 1 + C T READ 220072099 + 220072079 220072119 41 CAGGCATCTTCTGCGCAGACCATGTGGCCTACGCCCAGCAT CAGGCATCTTCTGTGCAGACCATGTGGCCTACGCCCAGCAT < 41bp 1 0.335474960391293 1 0.291888982057571 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220072099 chr2:220072092 synonymous SNV . 0 14 hm5C_associated_SNPs_31978 0 0 1 0 2 Ribosome 1 0.500231644266079 1 0.999536711467843 hm5C_site_32019 DeepMRMD:1;iRNA_m5C:0.999536711467843 32020 chr8 77620171 77620171 1 + G A READ 77620172 + 77620152 77620192 41 TTGAAGTGTATTGCCATTGGCAACCCTGTTCACCTAAAATG TTGAAGTGTATTGCCATTGACAACCCTGTTCACCTAAAATG < 41bp 1 0.0990088284824758 1 0.079472541809082 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77620172 chr8:77620171 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_31979 0 0 1 0 0 Ribosome 1 0.500231643921116 1 0.999536712157767 hm5C_site_32020 DeepMRMD:1;iRNA_m5C:0.999536712157767 32021 chr5 140084144 140084144 1 + G A READ 140084145 + 140084125 140084165 41 TTGAGGAAAGGATGAAGGAGCTCAGAGAAGAGGTAAGGGTC TTGAGGAAAGGATGAAGGAACTCAGAGAAGAGGTAAGGGTC < 41bp 1 0.629433290745679 1 0.490558117628098 experiment 0.741133418508642 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084145 chr5:140084144 synonymous SNV . 0 20 hm5C_associated_SNPs_31980 0 0 1 0 1 Ribosome 1 0.500231643921075 1 0.999536712157851 hm5C_site_32021 DeepMRMD:1;iRNA_m5C:0.999536712157851 32022 chr7 148921497 148921497 1 + C T READ 148921485 + 148921465 148921505 41 AGACCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGG AGACCTACAGCCGTAAGGAGCACCTGCAGAACTACCAGCGG < 41bp 1 0.332818640086332 1 0.208380341529846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921485 chr7:148921497 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_31981 0 0 1 1 0 Cytosol 1 0.500231644939068 1 0.999536710121864 hm5C_site_32022 DeepMRMD:1;iRNA_m5C:0.999536710121864 32023 chr7 148921497 148921497 1 + C T READ 148921487 + 148921467 148921507 41 ACCTACAGCCGTAAGGAGCACCTGCAGAACCACCAGCGGCT ACCTACAGCCGTAAGGAGCACCTGCAGAACTACCAGCGGCT < 41bp 1 0.0549374594218805 1 0.142211407423019 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921487 chr7:148921497 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_31982 0 0 1 1 0 Cytosol 1 0.500232257030853 1 0.999535485938294 hm5C_site_32023 DeepMRMD:1;iRNA_m5C:0.999535485938294 32024 chr16 88495531 88495531 1 + C T READ 88495544 + 88495524 88495564 41 CCTACAACGGAATGACAGACCCTGGGGCTCAGCCCCTGTTC CCTACAATGGAATGACAGACCCTGGGGCTCAGCCCCTGTTC < 41bp 1 0.31332864048828 1 0.554484963417053 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88495544 chr16:88495531 synonymous SNV . 0 8 hm5C_associated_SNPs_31984 0 0 0 0 0 exosome 1 0.500231643921092 0.891030073165894 0.999536712157815 hm5C_site_32024 DeepMRMD:0.891030073165894;iRNA_m5C:0.999536712157815 32025 chr8 146033275 146033275 1 + G A READ 146033291 + 146033271 146033311 41 CAGCGCTTCATCCGAGGGTCCTCGCTCCTGAAGCACCACCG CAGCACTTCATCCGAGGGTCCTCGCTCCTGAAGCACCACCG < 41bp 1 0.378262595836413 1 0.208534210920334 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146033291 chr8:146033275 nonsynonymous SNV 0.442 2 5 hm5C_associated_SNPs_31985 0 0 0 0 0 chromatin 1 0.500231639691769 1 0.999536720616463 hm5C_site_32025 DeepMRMD:1;iRNA_m5C:0.999536720616463 32026 chr8 146033294 146033294 1 + G A READ 146033291 + 146033271 146033311 41 CAGCGCTTCATCCGAGGGTCCTCGCTCCTGAAGCACCACCG CAGCGCTTCATCCGAGGGTCCTCACTCCTGAAGCACCACCG < 41bp 1 0.182657931506977 1 0.095973402261734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146033291 chr8:146033294 synonymous SNV . 0 24 hm5C_associated_SNPs_31986 0 0 0 0 0 chromatin 1 0.500229650579371 1 0.999540698841257 hm5C_site_32026 DeepMRMD:1;iRNA_m5C:0.999540698841257 32027 chr22 29445770 29445770 1 + G A READ 29445774 + 29445754 29445794 41 TTCAGCTGCTATCACGGCCACCGCTCGGTGTGCAGTGGCTA TTCAGCTGCTATCACGACCACCGCTCGGTGTGCAGTGGCTA < 41bp 1 0.105974446580924 1 0.0998026430606842 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29445774 chr22:29445770 nonsynonymous SNV 0.997 4 17 hm5C_associated_SNPs_31987 0 0 0 0 0 Ribosome 1 0.500319272229985 1 0.99936145554003 hm5C_site_32027 DeepMRMD:1;iRNA_m5C:0.99936145554003 32028 chr1 228451874 228451874 1 + C T SARC 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGTGGGGACCAGTGCCACGCTGAGCTGCGA < 41bp 1 0.101575330163382 1 0.647727191448212 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451874 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_31988 0 0 0 0 1 Ribosome 1 0.500234727789795 0.704545617103576 0.999530544420411 hm5C_site_32028 DeepMRMD:0.704545617103576;iRNA_m5C:0.999530544420411 32029 chr17 28747895 28747895 1 + G T SARC 28747907 + 28747887 28747927 41 GGCCAACTGTTTTGAGATCACATTAGAACTGTCTTGTTGCA GGCCAACTTTTTTGAGATCACATTAGAACTGTCTTGTTGCA < 41bp 1 0.300240525300903 1 0.0665839910507202 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28747907 chr17:28747895 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_31989 0 0 1 1 1 Nucleus 1 0.500231643922926 1 0.999536712154149 hm5C_site_32029 DeepMRMD:1;iRNA_m5C:0.999536712154149 32030 chr22 25019094 25019094 1 + G C SARC 25019089 + 25019069 25019109 41 TGCAGGGGGCATTGTGACAGCTGAGGACCTGAACAACTACC TGCAGGGGGCATTGTGACAGCTGAGCACCTGAACAACTACC < 41bp 1 0.459678303500156 1 0.365133166313171 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GGT1 ENSG00000100031 CDS Human protein_coding chr22:25019089 chr22:25019094 nonsynonymous SNV 0.841 3 26 hm5C_associated_SNPs_31990 0 0 1 0 1 exosome 1 0.500231643929547 1 0.999536712140906 hm5C_site_32030 DeepMRMD:1;iRNA_m5C:0.999536712140906 32031 chr5 156816277 156816277 1 + G T SARC 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTTAC < 41bp 1 0.310483750683135 1 0.481935024261475 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816277 synonymous SNV . 0 39 hm5C_associated_SNPs_31991 0 0 1 0 1 Cytosol 1 0.501859692736855 1 0.996280614526289 hm5C_site_32031 DeepMRMD:1;iRNA_m5C:0.996280614526289 32032 chr7 142460339 142460339 1 + G A SARC 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTATGAA < 41bp 1 0.462889946037919 1 0.0747100412845612 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460339 nonsynonymous SNV 0.067 5 37 hm5C_associated_SNPs_31993 0 0 0 0 2 Cytosol 1 0.500231643918152 1 0.999536712163697 hm5C_site_32032 DeepMRMD:1;iRNA_m5C:0.999536712163697 32033 chr7 142460339 142460339 1 + G A SARC 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTATGAAGCCTC < 41bp 1 0.338059644594158 1 0.246099472045898 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460339 nonsynonymous SNV 0.067 5 32 hm5C_associated_SNPs_31994 0 0 0 0 2 Cytosol 1 0.500231643921332 1 0.999536712157335 hm5C_site_32033 DeepMRMD:1;iRNA_m5C:0.999536712157335 32034 chr7 142460339 142460339 1 + G A SARC 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAGCCAGGCTAAGTATGAAGCCTCC < 41bp 1 0.569470485508842 1 0.734101295471191 experiment 0.861059028982315 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460339 nonsynonymous SNV 0.067 5 31 hm5C_associated_SNPs_31995 0 0 0 0 2 Cytosol 1 0.500231647773546 0.531797409057618 0.999536704452907 hm5C_site_32034 DeepMRMD:0.531797409057618;iRNA_m5C:0.999536704452907 32035 chr7 142460339 142460339 1 + G A SARC 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCAGGCTAAGTATGAAGCCTCCTACC < 41bp 1 0.407794787903693 1 0.0870877206325531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460339 nonsynonymous SNV 0.067 5 27 hm5C_associated_SNPs_31996 0 0 0 0 2 Cytosol 1 0.500231643921102 1 0.999536712157797 hm5C_site_32035 DeepMRMD:1;iRNA_m5C:0.999536712157797 32036 chr7 142460339 142460339 1 + G A SARC 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTATGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.0390470585123761 1 0.0974368751049042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460339 nonsynonymous SNV 0.067 5 15 hm5C_associated_SNPs_31997 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32036 DeepMRMD:1;iRNA_m5C:0.999536712157815 32037 chr7 142460339 142460339 1 + G A SARC 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTATGAAGCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.201225666224626 1 0.376185148954391 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460339 nonsynonymous SNV 0.067 5 14 hm5C_associated_SNPs_31998 0 0 0 0 2 Cytosol 1 0.500231643904534 1 0.999536712190932 hm5C_site_32037 DeepMRMD:1;iRNA_m5C:0.999536712190932 32038 chr7 142460339 142460339 1 + G A SARC 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTATGAAGCCTCCTACCCTGGAAAGATTACCA < 41bp 1 0.0160041715150711 1 0.0975205898284912 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460339 nonsynonymous SNV 0.067 5 12 hm5C_associated_SNPs_31999 0 0 0 0 2 Cytosol 1 0.500231707948337 1 0.999536584103325 hm5C_site_32038 DeepMRMD:1;iRNA_m5C:0.999536584103325 32039 chr7 142460339 142460339 1 + G A SARC 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTATGAAGCCTCCTACCCTGGAAAGATTACCAG < 41bp 1 0.206453748140861 1 0.267307877540588 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460339 nonsynonymous SNV 0.067 5 11 hm5C_associated_SNPs_32000 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32039 DeepMRMD:1;iRNA_m5C:0.999536712157815 32040 chr7 142460339 142460339 1 + G A SARC 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTATGAAGCCTCCTACCCTGGAAAGATTACCAGCAA < 41bp 1 0.329750987194574 1 0.465885818004608 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460339 nonsynonymous SNV 0.067 5 8 hm5C_associated_SNPs_32001 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32040 DeepMRMD:1;iRNA_m5C:0.999536712157815 32041 chr7 142460339 142460339 1 + G A SARC 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTATGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC < 41bp 1 0.338256384027174 1 0.581249713897705 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460339 nonsynonymous SNV 0.067 5 7 hm5C_associated_SNPs_32002 0 0 0 0 2 Cytosol 1 0.500231643921092 0.83750057220459 0.999536712157815 hm5C_site_32041 DeepMRMD:0.83750057220459;iRNA_m5C:0.999536712157815 32042 chr6 168352571 168352571 1 + T A SARC 168352591 + 168352571 168352611 41 TCCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGA ACCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGA < 41bp 1 0.188889742164201 1 0.388107359409332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352591 chr6:168352571 nonsynonymous SNV 0.524 0 1 hm5C_associated_SNPs_32004 0 0 1 0 0 unknown 1 0.50023165380997 1 0.99953669238006 hm5C_site_32042 DeepMRMD:1;iRNA_m5C:0.99953669238006 32043 chr11 73021102 73021102 1 + G A SARC 73021096 + 73021076 73021116 41 CCAGATATCGCCTCAGAGACCCTGACGCTTCTCAGTTTCCT CCAGATATCGCCTCAGAGACCCTGACACTTCTCAGTTTCCT < 41bp 1 0.0876512369757646 1 0.0398822426795959 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73021096 chr11:73021102 synonymous SNV . 0 27 hm5C_associated_SNPs_32005 0 0 1 0 0 Cytosol 1 0.500231643921085 1 0.999536712157829 hm5C_site_32043 DeepMRMD:1;iRNA_m5C:0.999536712157829 32044 chr3 183368404 183368404 1 + G T SARC 183368408 + 183368388 183368428 41 GCTGTGCTCTCAGCCTGTAGCAGCTACTTCAGAGCTATGTT GCTGTGCTCTCAGCCTTTAGCAGCTACTTCAGAGCTATGTT < 41bp 1 0.605071403599738 1 0.391048431396484 experiment 0.789857192800524 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183368408 chr3:183368404 nonsynonymous SNV 0.969 2 17 hm5C_associated_SNPs_32006 0 0 1 0 0 Ribosome 1 0.500233831203545 1 0.999532337592909 hm5C_site_32044 DeepMRMD:1;iRNA_m5C:0.999532337592909 32045 chr13 20567831 20567831 1 + G T SARC 20567812 + 20567792 20567832 41 GTAAGCTCTGTGAATGATGGCCAATTAGAAAATACTGACGG GTAAGCTCTGTGAATGATGGCCAATTAGAAAATACTGACTG < 41bp 1 0.0832793160918605 1 0.145952522754669 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZMYM2 ENSG00000121741 CDS Human protein_coding chr13:20567812 chr13:20567831 nonsynonymous SNV 0.929 2 40 hm5C_associated_SNPs_32007 0 0 1 0 0 Nucleus 1 0.500218048424129 1 0.999563903151742 hm5C_site_32045 DeepMRMD:1;iRNA_m5C:0.999563903151742 32046 chr13 20567831 20567831 1 + G T SARC 20567813 + 20567793 20567833 41 TAAGCTCTGTGAATGATGGCCAATTAGAAAATACTGACGGG TAAGCTCTGTGAATGATGGCCAATTAGAAAATACTGACTGG < 41bp 1 0.0741214495896795 1 0.14330917596817 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZMYM2 ENSG00000121741 CDS Human protein_coding chr13:20567813 chr13:20567831 nonsynonymous SNV 0.929 2 39 hm5C_associated_SNPs_32008 0 0 1 0 0 Nucleus 1 0.500231643920698 1 0.999536712158604 hm5C_site_32046 DeepMRMD:1;iRNA_m5C:0.999536712158604 32047 chr13 20567831 20567831 1 + G T SARC 20567826 + 20567806 20567846 41 TGATGGCCAATTAGAAAATACTGACGGGCGAGATATGAACT TGATGGCCAATTAGAAAATACTGACTGGCGAGATATGAACT < 41bp 1 0.133060646837387 1 0.0837624073028564 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZMYM2 ENSG00000121741 CDS Human protein_coding chr13:20567826 chr13:20567831 nonsynonymous SNV 0.929 2 26 hm5C_associated_SNPs_32009 0 0 1 0 0 Nucleus 1 0.50023164064281 1 0.99953671871438 hm5C_site_32047 DeepMRMD:1;iRNA_m5C:0.99953671871438 32048 chr9 33799163 33799163 1 + C A SARC 33799160 + 33799140 33799180 41 GTGGACTGGATTAAGGACACCATCGCTGCCAACAGCTAAAG GTGGACTGGATTAAGGACACCATAGCTGCCAACAGCTAAAG < 41bp 1 0.21862937973556 1 0.0717703104019165 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRSS3 ENSG00000010438 CDS Human protein_coding chr9:33799160 chr9:33799163 synonymous SNV . 0 24 hm5C_associated_SNPs_32010 0 0 0 0 0 Ribosome 1 0.50023164391912 1 0.99953671216176 hm5C_site_32048 DeepMRMD:1;iRNA_m5C:0.99953671216176 32049 chr1 45479716 45479716 1 + G T SARC 45479707 + 45479687 45479727 41 TCCTCACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTG TCCTCACTGATGCTCTGGTCCCATATCTGTTAGGACAAGTG < 41bp 1 0.236288993671308 1 0.0456165969371796 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UROD ENSG00000126088 CDS Human protein_coding chr1:45479707 chr1:45479716 nonsynonymous SNV 0.996 2 30 hm5C_associated_SNPs_32011 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32049 DeepMRMD:1;iRNA_m5C:0.999536712157815 32050 chr1 45479716 45479716 1 + G T SARC 45479708 + 45479688 45479728 41 CCTCACTGATGCTCTGGTCCCATATCTGGTAGGACAAGTGG CCTCACTGATGCTCTGGTCCCATATCTGTTAGGACAAGTGG < 41bp 1 0.250115107004638 1 0.257174015045166 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UROD ENSG00000126088 CDS Human protein_coding chr1:45479708 chr1:45479716 nonsynonymous SNV 0.996 2 29 hm5C_associated_SNPs_32012 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_32050 DeepMRMD:1;iRNA_m5C:0.999536712157814 32051 chr4 56291555 56291555 1 + G T SARC 56291562 + 56291542 56291582 41 GTGACAATCATAGGAGGCATCGTTTTTTTGGCGTTTGCATT GTGACAATCATAGTAGGCATCGTTTTTTTGGCGTTTGCATT < 41bp 1 0.0890240837740452 1 0.105803906917572 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56291562 chr4:56291555 nonsynonymous SNV 1.000 5 14 hm5C_associated_SNPs_32013 0 0 1 0 1 Ribosome 1 0.500231644395479 1 0.999536711209043 hm5C_site_32051 DeepMRMD:1;iRNA_m5C:0.999536711209043 32052 chr17 7983209 7983209 1 + G T SARC 7983202 + 7983182 7983222 41 GGATCAGGCCGGGGTTGACGCCGTTGAGGTACTGGTACCCA GGATCAGGCCGGGGTTGACGCCGTTGATGTACTGGTACCCA < 41bp 1 0.369764627385016 1 0.0826844871044159 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7983202 chr17:7983209 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_32014 0 0 0 0 1 exosome 1 0.500231643921095 1 0.999536712157811 hm5C_site_32052 DeepMRMD:1;iRNA_m5C:0.999536712157811 32053 chr2 28812626 28812626 1 + T A SARC 28812615 + 28812595 28812635 41 CAAGTCTCACTCCCGAGCAGCCAGTGCTCTCTGGAACAATA CAAGTCTCACTCCCGAGCAGCCAGTGCTCTCAGGAACAATA < 41bp 1 0.0459470041817139 1 0.0317780673503876 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PLB1 ENSG00000163803 CDS Human protein_coding chr2:28812615 chr2:28812626 nonsynonymous SNV 0.463 4 32 hm5C_associated_SNPs_32015 0 0 0 0 2 exosome 1 0.500231651999564 1 0.999536696000872 hm5C_site_32053 DeepMRMD:1;iRNA_m5C:0.999536696000872 32054 chr12 52370292 52370292 1 + G T SARC 52370279 + 52370259 52370299 41 GAGACTGGACATGGAAGATCCCTCATGTGAGATGTGTCTCT GAGACTGGACATGGAAGATCCCTCATGTGAGATTTGTCTCT < 41bp 1 0.249924327210651 1 0.489091694355011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52370279 chr12:52370292 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_32016 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921096 1 0.999536712157808 hm5C_site_32054 DeepMRMD:1;iRNA_m5C:0.999536712157808 32055 chr7 142460728 142460728 1 + G A SARC 142460726 + 142460706 142460746 41 TTCTTCCCCCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCA TTCTTCCCCCCAGGGTGATTCTAGTGGCCCTGTGGTCTGCA < 41bp 1 0.437778385010693 1 0.441788673400879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460726 chr7:142460728 nonsynonymous SNV 0.416 4 23 hm5C_associated_SNPs_32017 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32055 DeepMRMD:1;iRNA_m5C:0.999536712157815 32056 chr7 142460728 142460728 1 + G A SARC 142460733 + 142460713 142460753 41 CCCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACA CCCCAGGGTGATTCTAGTGGCCCTGTGGTCTGCAATGGACA < 41bp 1 0.0866312162923989 1 0.0867878794670105 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460733 chr7:142460728 nonsynonymous SNV 0.416 4 16 hm5C_associated_SNPs_32018 0 0 0 0 0 Cytosol 1 0.500231643921106 1 0.999536712157789 hm5C_site_32056 DeepMRMD:1;iRNA_m5C:0.999536712157789 32057 chr7 142460728 142460728 1 + G A SARC 142460734 + 142460714 142460754 41 CCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAG CCCAGGGTGATTCTAGTGGCCCTGTGGTCTGCAATGGACAG < 41bp 1 0.105822827708594 1 0.045820951461792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460734 chr7:142460728 nonsynonymous SNV 0.416 4 15 hm5C_associated_SNPs_32019 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_32057 DeepMRMD:1;iRNA_m5C:0.999536712157815 32058 chr7 142460728 142460728 1 + G A SARC 142460735 + 142460715 142460755 41 CCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGC CCAGGGTGATTCTAGTGGCCCTGTGGTCTGCAATGGACAGC < 41bp 1 0.362248607501142 1 0.114156424999237 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460735 chr7:142460728 nonsynonymous SNV 0.416 4 14 hm5C_associated_SNPs_32020 0 0 0 0 0 Cytosol 1 0.500224426436092 1 0.999551147127816 hm5C_site_32058 DeepMRMD:1;iRNA_m5C:0.999551147127816 32059 chr7 142460728 142460728 1 + G A SARC 142460745 + 142460725 142460765 41 TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGT TCTAGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGT < 41bp 1 0.416247734161007 1 0.09681037068367 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460745 chr7:142460728 nonsynonymous SNV 0.416 4 4 hm5C_associated_SNPs_32021 0 0 0 0 0 Cytosol 1 0.500231643921316 1 0.999536712157368 hm5C_site_32059 DeepMRMD:1;iRNA_m5C:0.999536712157368 32060 chr7 134215401 134215401 1 + C G SARC 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTCTCCTGTTGGCAAAGTGAAAG < 41bp 1 0.36388034073358 1 0.426388680934906 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215401 nonsynonymous SNV 0.000 2 26 hm5C_associated_SNPs_32022 0 0 0 0 1 exosome 1 0.500233442399298 1 0.999533115201404 hm5C_site_32060 DeepMRMD:1;iRNA_m5C:0.999533115201404 32061 chr17 62223815 62223815 1 + A T SARC 62223795 + 62223775 62223815 41 CATAACTGGGGCCGCCTGGCCTCCCGCGGGCGGCCTTTTTA CATAACTGGGGCCGCCTGGCCTCCCGCGGGCGGCCTTTTTT < 41bp 1 0.360577700550316 1 0.744592487812042 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223795 chr17:62223815 . . 0 41 hm5C_associated_SNPs_32023 0 0 1 1 0 unknown 1 0.500231643921092 0.510815024375916 0.999536712157815 hm5C_site_32061 DeepMRMD:0.510815024375916;iRNA_m5C:0.999536712157815 32062 chr17 62223815 62223815 1 + A T SARC 62223805 + 62223785 62223825 41 GCCGCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCGAGCG GCCGCCTGGCCTCCCGCGGGCGGCCTTTTTTACCGCGAGCG < 41bp 1 0.307887914137494 1 0.256020784378052 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223805 chr17:62223815 . . 0 31 hm5C_associated_SNPs_32024 0 0 1 1 0 unknown 1 0.500231643921331 1 0.999536712157338 hm5C_site_32062 DeepMRMD:1;iRNA_m5C:0.999536712157338 32063 chr17 62223815 62223815 1 + A T SARC 62223808 + 62223788 62223828 41 GCCTGGCCTCCCGCGGGCGGCCTTTTTAACCGCGAGCGACA GCCTGGCCTCCCGCGGGCGGCCTTTTTTACCGCGAGCGACA < 41bp 1 0.0273651796344092 1 0.034343421459198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223808 chr17:62223815 . . 0 28 hm5C_associated_SNPs_32025 0 0 1 1 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_32063 DeepMRMD:1;iRNA_m5C:0.999536712157815 32064 chr17 62223815 62223815 1 + A T SARC 62223817 + 62223797 62223837 41 CCCGCGGGCGGCCTTTTTAACCGCGAGCGACAAGAAGTAAC CCCGCGGGCGGCCTTTTTTACCGCGAGCGACAAGAAGTAAC < 41bp 1 0.550957681421666 1 0.258524209260941 experiment 0.898084637156667 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223817 chr17:62223815 . . 0 19 hm5C_associated_SNPs_32026 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_32064 DeepMRMD:1;iRNA_m5C:0.999536712157815 32065 chr17 62223815 62223815 1 + A T SARC 62223827 + 62223807 62223847 41 GCCTTTTTAACCGCGAGCGACAAGAAGTAACCTGACTGTCC GCCTTTTTTACCGCGAGCGACAAGAAGTAACCTGACTGTCC < 41bp 1 0.665297357548909 1 0.331706672906876 experiment 0.669405284902181 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223827 chr17:62223815 . . 0 9 hm5C_associated_SNPs_32027 0 0 1 1 0 unknown 1 0.500231645567535 1 0.99953670886493 hm5C_site_32065 DeepMRMD:1;iRNA_m5C:0.99953670886493 32066 chr1 145368529 145368529 1 + G C SARC 145368536 + 145368516 145368556 41 GTCAATGTACTTTGAACTACCTGACTCATTCCAGCACTACA GTCAATGTACTTTCAACTACCTGACTCATTCCAGCACTACA < 41bp 1 0.0710505099374868 1 0.10968229174614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368536 chr1:145368529 nonsynonymous SNV . 0 14 hm5C_associated_SNPs_32028 0 0 0 0 1 exosome 1 0.500273353510892 1 0.999453292978215 hm5C_site_32066 DeepMRMD:1;iRNA_m5C:0.999453292978215 32067 chr1 145368529 145368529 1 + G C SARC 145368540 + 145368520 145368560 41 ATGTACTTTGAACTACCTGACTCATTCCAGCACTACAGAAG ATGTACTTTCAACTACCTGACTCATTCCAGCACTACAGAAG < 41bp 1 0.073766904886881 1 0.0731031894683838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368540 chr1:145368529 nonsynonymous SNV . 0 10 hm5C_associated_SNPs_32029 0 0 0 0 1 exosome 1 0.500231663941718 1 0.999536672116563 hm5C_site_32067 DeepMRMD:1;iRNA_m5C:0.999536672116563 32068 chr8 22064428 22064428 1 + C T SARC 22064413 + 22064393 22064433 41 ACCAGTGGTACCATCACCAGCCCCAACTGGCCTGACAAGTA ACCAGTGGTACCATCACCAGCCCCAACTGGCCTGATAAGTA < 41bp 1 0.175896161513726 1 0.529693901538849 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064413 chr8:22064428 synonymous SNV . 0 36 hm5C_associated_SNPs_32030 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920877 0.940612196922302 0.999536712158246 hm5C_site_32068 DeepMRMD:0.940612196922302;iRNA_m5C:0.999536712158246 32069 chr17 40714724 40714724 1 + G A SARC 40714704 + 40714684 40714724 41 TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCG TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCA < 41bp 1 0.545387121572736 1 0.433656394481659 experiment 0.909225756854528 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40714704 chr17:40714724 synonymous SNV . 0 41 hm5C_associated_SNPs_32031 0 0 1 0 1 Ribosome 1 0.500231643958987 1 0.999536712082025 hm5C_site_32069 DeepMRMD:1;iRNA_m5C:0.999536712082025 32070 chr17 57918688 57918688 1 + G T SARC 57918672 + 57918652 57918692 41 TTGACTGTTGAATCTCATGGCAACACCAGTCGATGGGCTGT TTGACTGTTGAATCTCATGGCAACACCAGTCGATGGTCTGT < 41bp 1 0.593604173309498 1 0.130799502134323 experiment 0.812791653381004 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control MIR21 ENSG00000199004 ncRNA_exonic Human other chr17:57918672 chr17:57918688 . . 0 37 hm5C_associated_SNPs_32032 0 0 1 0 0 unknown 1 0.500231682116116 1 0.999536635767767 hm5C_site_32070 DeepMRMD:1;iRNA_m5C:0.999536635767767 32071 chr11 993358 993358 1 + G C SARC 993371 + 993351 993391 41 GAAACTTGATAGCTGGAGACCCGAGATCCAGGTGAGAGGCC GAAACTTCATAGCTGGAGACCCGAGATCCAGGTGAGAGGCC < 41bp 1 0.1934351863576 1 0.543855428695679 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:993371 chr11:993358 nonsynonymous SNV 0.990 4 8 hm5C_associated_SNPs_32034 0 0 1 1 2 Nucleus 1 0.500231643624003 0.912289142608642 0.999536712751993 hm5C_site_32071 DeepMRMD:0.912289142608642;iRNA_m5C:0.999536712751993 32072 chr11 993375 993375 1 + G C SARC 993371 + 993351 993391 41 GAAACTTGATAGCTGGAGACCCGAGATCCAGGTGAGAGGCC GAAACTTGATAGCTGGAGACCCGACATCCAGGTGAGAGGCC < 41bp 1 0.0863257435265602 1 0.594800889492035 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:993371 chr11:993375 nonsynonymous SNV 0.223 3 25 hm5C_associated_SNPs_32035 0 0 1 2 2 Nucleus 1 0.500231574178163 0.81039822101593 0.999536851643674 hm5C_site_32072 DeepMRMD:0.81039822101593;iRNA_m5C:0.999536851643674 32073 chr17 57737919 57737919 1 + G T SARC 57737924 + 57737904 57737944 41 GGGAAATTACTCGGAGGCAGCAAAGGTGGCTGCTAATGCAC GGGAAATTACTCGGATGCAGCAAAGGTGGCTGCTAATGCAC < 41bp 1 0.440117316568735 1 0.456937342882156 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57737924 chr17:57737919 nonsynonymous SNV 0.997 1 16 hm5C_associated_SNPs_32036 0 0 1 0 1 Nucleus 1 0.500231643921196 1 0.999536712157607 hm5C_site_32073 DeepMRMD:1;iRNA_m5C:0.999536712157607 32074 chr11 35006133 35006133 1 + A G SARC 35006117 + 35006097 35006137 41 TTTTCTTTTTCTATTTCTAGCAAATGCCAGATGTTAATGTA TTTTCTTTTTCTATTTCTAGCAAATGCCAGATGTTAGTGTA < 41bp 1 0.146611295567355 1 0.629269957542419 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:35006117 chr11:35006133 nonsynonymous SNV 0.954 4 37 hm5C_associated_SNPs_32037 0 0 1 0 1 Ribosome 1 0.500232490770468 0.741460084915162 0.999535018459063 hm5C_site_32074 DeepMRMD:0.741460084915162;iRNA_m5C:0.999535018459063 32075 chr1 228451900 228451900 1 + G A SARC 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCAA < 41bp 1 0.109851367063757 1 0.77393639087677 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451900 nonsynonymous SNV 0.905 3 40 hm5C_associated_SNPs_32038 0 0 0 0 1 Ribosome 1 0.500231688231593 0.45212721824646 0.999536623536814 hm5C_site_32075 DeepMRMD:0.45212721824646;iRNA_m5C:0.999536623536814 32076 chr12 112915797 112915797 1 + C T SARC 112915794 + 112915774 112915814 41 CTCCCGAGTGATTGTCATGACAACGAAAGAAGTGGAGAGAG CTCCCGAGTGATTGTCATGACAATGAAAGAAGTGGAGAGAG < 41bp 1 0.376345404381894 1 0.310958325862885 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915794 chr12:112915797 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_32039 0 0 1 0 1 Ribosome 1 0.500231642284814 1 0.999536715430372 hm5C_site_32076 DeepMRMD:1;iRNA_m5C:0.999536715430372 32077 chr2 201435917 201435917 1 + A G SARC 201435937 + 201435917 201435957 41 ATAATCTTTCTGCAGACACTCCCTGTGCAACAGTTTTAGAT GTAATCTTTCTGCAGACACTCCCTGTGCAACAGTTTTAGAT < 41bp 1 0.231963316058897 1 0.0636983513832092 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SGO2 ENSG00000163535 CDS Human protein_coding chr2:201435937 chr2:201435917 nonsynonymous SNV 0.932 0 1 hm5C_associated_SNPs_32040 0 0 1 0 0 cytosol 1 0.500231678089159 1 0.999536643821683 hm5C_site_32077 DeepMRMD:1;iRNA_m5C:0.999536643821683 32078 chr12 57624685 57624685 1 + G T SARC 57624668 + 57624648 57624688 41 CCAGACTCAGACTGGGGAAGCAAACAGGGGCTGGACAGGCC CCAGACTCAGACTGGGGAAGCAAACAGGGGCTGGACATGCC < 41bp 1 0.373236684850038 1 0.138315886259079 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57624668 chr12:57624685 nonsynonymous SNV 0.981 4 38 hm5C_associated_SNPs_32041 0 0 1 0 2 Cytosol 1 0.500231646825778 1 0.999536706348443 hm5C_site_32078 DeepMRMD:1;iRNA_m5C:0.999536706348443 32079 chr12 57624685 57624685 1 + G T SARC 57624701 + 57624681 57624721 41 GACAGGCCAGGAGAGCCTGTCGGACAGTGATCCTGAGATGT GACATGCCAGGAGAGCCTGTCGGACAGTGATCCTGAGATGT < 41bp 1 0.348882353942483 1 0.399427473545074 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57624701 chr12:57624685 nonsynonymous SNV 0.981 4 5 hm5C_associated_SNPs_32043 0 0 1 0 2 Cytosol 1 0.500231643872707 1 0.999536712254586 hm5C_site_32079 DeepMRMD:1;iRNA_m5C:0.999536712254586 32080 chr1 145116299 145116299 1 + G T SARC 145116287 + 145116267 145116307 41 TTCCTTCAAAGAAGGCAGTCCTTTGGGAAGGTGTTTTTTTT TTCCTTCAAAGAAGGCAGTCCTTTGGGAAGGTTTTTTTTTT < 41bp 1 0.0482530806814557 1 0.120517730712891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145116287 chr1:145116299 . . 0 33 hm5C_associated_SNPs_32045 0 0 1 1 0 Cytosol 1 0.500231643911801 1 0.999536712176397 hm5C_site_32080 DeepMRMD:1;iRNA_m5C:0.999536712176397 32081 chr16 66998569 66998569 1 + C A SARC 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGGCTGTTCCACAGAGCCATCAAACAGAGTGGGGTCAT < 41bp 1 0.486275914085571 1 0.238858103752136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998569 nonsynonymous SNV 0.207 0 26 hm5C_associated_SNPs_32046 0 0 1 0 2 nucleolus 1 0.500231643529646 1 0.999536712940709 hm5C_site_32081 DeepMRMD:1;iRNA_m5C:0.999536712940709 32082 chr5 141353192 141353192 1 + G T SARC 141353198 + 141353178 141353218 41 CAGGAGGATGAATTGCTGGCCCTGGCAAGTATTTACGATGG CAGGAGGATGAATTTCTGGCCCTGGCAAGTATTTACGATGG < 41bp 1 0.303471300097903 1 0.155482798814774 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141353198 chr5:141353192 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_32047 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32082 DeepMRMD:1;iRNA_m5C:0.999536712157815 32083 chr15 48626662 48626662 1 + G A SARC 48626680 + 48626660 48626700 41 ACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAG ACAGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAG < 41bp 1 0.0989200373412812 1 0.0728571116924286 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626680 chr15:48626662 synonymous SNV . 0 3 hm5C_associated_SNPs_32049 0 0 1 0 2 Cytosol 1 0.500231636775672 1 0.999536726448656 hm5C_site_32083 DeepMRMD:1;iRNA_m5C:0.999536726448656 32084 chr15 48626662 48626662 1 + G A SARC 48626682 + 48626662 48626702 41 GGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAG AGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAG < 41bp 1 0.201228656761242 1 0.0883403718471527 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626682 chr15:48626662 synonymous SNV . 0 1 hm5C_associated_SNPs_32050 0 0 1 0 2 Cytosol 1 0.500230591639055 1 0.999538816721891 hm5C_site_32084 DeepMRMD:1;iRNA_m5C:0.999538816721891 32085 chrX 7171296 7171296 1 + C A SARC 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGAATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA < 41bp 1 0.302702576088157 1 0.0641660094261169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171296 nonsynonymous SNV 0.002 1 5 hm5C_associated_SNPs_32051 0 0 0 1 1 Cytosol 1 0.500231643844789 1 0.999536712310421 hm5C_site_32085 DeepMRMD:1;iRNA_m5C:0.999536712310421 32086 chr12 132325144 132325144 1 + C A SARC 132325139 + 132325119 132325159 41 GTCCGGACGTTCCCACGGGACTCACCACTGGGGCACGACAC GTCCGGACGTTCCCACGGGACTCACAACTGGGGCACGACAC < 41bp 1 0.209403633568643 1 0.0608567595481873 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325139 chr12:132325144 nonsynonymous SNV 0.253 0 26 hm5C_associated_SNPs_32052 0 0 1 0 0 Cytosol 1 0.500231575820888 1 0.999536848358224 hm5C_site_32086 DeepMRMD:1;iRNA_m5C:0.999536848358224 32087 chr6 25450210 25450210 1 + G A SARC 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAACA < 41bp 1 0.419729675702341 1 0.386916011571884 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450210 synonymous SNV . 0 39 hm5C_associated_SNPs_32053 0 0 0 0 2 unknown 1 0.500231641040063 1 0.999536717919875 hm5C_site_32087 DeepMRMD:1;iRNA_m5C:0.999536717919875 32088 chr2 201173695 201173695 1 + G T SARC 201173714 + 201173694 201173734 41 GGGCTTGAGAAGCTGCTCTGCCACACCAGTAAGGATCAGGG GTGCTTGAGAAGCTGCTCTGCCACACCAGTAAGGATCAGGG < 41bp 1 0.062437778086108 1 0.157339751720428 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPATS2L ENSG00000196141 UTR5 Human protein_coding chr2:201173714 chr2:201173695 . . 0 2 hm5C_associated_SNPs_32054 0 0 0 0 0 Nucleus 1 0.500231643405317 1 0.999536713189366 hm5C_site_32088 DeepMRMD:1;iRNA_m5C:0.999536713189366 32089 chr7 142459862 142459862 1 + C A SARC 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAA < 41bp 1 0.486688389236328 1 0.0512187480926514 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459862 nonsynonymous SNV 0.763 5 41 hm5C_associated_SNPs_32055 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32089 DeepMRMD:1;iRNA_m5C:0.999536712157815 32090 chr7 142459862 142459862 1 + C A SARC 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAAAC < 41bp 1 0.45084132829994 1 0.0250179469585419 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459862 nonsynonymous SNV 0.763 5 39 hm5C_associated_SNPs_32056 0 0 0 0 1 Cytosol 1 0.500231643991756 1 0.999536712016489 hm5C_site_32090 DeepMRMD:1;iRNA_m5C:0.999536712016489 32091 chr7 142459862 142459862 1 + C A SARC 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTCTGGCTGGGGCAAAACTGCGAGCTCTGGCGGTGAGTGGG < 41bp 1 0.43274632601555 1 0.291166722774506 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459862 nonsynonymous SNV 0.763 5 16 hm5C_associated_SNPs_32060 0 0 0 0 1 Cytosol 1 0.500231643941269 1 0.999536712117462 hm5C_site_32091 DeepMRMD:1;iRNA_m5C:0.999536712117462 32092 chr7 142459862 142459862 1 + C A SARC 142459871 + 142459851 142459891 41 GGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC GGCTGGGGCAAAACTGCGAGCTCTGGCGGTGAGTGGGACCC < 41bp 1 0.36291248050842 1 0.368289828300476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459871 chr7:142459862 nonsynonymous SNV 0.763 5 12 hm5C_associated_SNPs_32061 0 0 0 0 1 Cytosol 1 0.500231643864673 1 0.999536712270654 hm5C_site_32092 DeepMRMD:1;iRNA_m5C:0.999536712270654 32093 chr7 142459862 142459862 1 + C A SARC 142459873 + 142459853 142459893 41 CTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTT CTGGGGCAAAACTGCGAGCTCTGGCGGTGAGTGGGACCCTT < 41bp 1 0.630700884404339 1 0.467204451560974 experiment 0.738598231191323 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459873 chr7:142459862 nonsynonymous SNV 0.763 5 10 hm5C_associated_SNPs_32062 0 0 0 0 1 Cytosol 1 0.500231652515628 1 0.999536694968745 hm5C_site_32093 DeepMRMD:1;iRNA_m5C:0.999536694968745 32094 chr7 142459862 142459862 1 + C A SARC 142459877 + 142459857 142459897 41 GGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC GGCAAAACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC < 41bp 1 0.504596075141317 1 0.858884572982788 experiment 0.990807849717366 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459877 chr7:142459862 nonsynonymous SNV 0.763 5 6 hm5C_associated_SNPs_32063 0 0 0 0 1 Cytosol 1 0.500231643921092 0.282230854034424 0.999536712157815 hm5C_site_32094 DeepMRMD:0.282230854034424;iRNA_m5C:0.999536712157815 32095 chr9 131456028 131456028 1 + G T SARC 131456045 + 131456025 131456065 41 GCTGATGAGTTAGGAGAGGTCATCAAAGATGATATTTGGCC GCTTATGAGTTAGGAGAGGTCATCAAAGATGATATTTGGCC < 41bp 1 0.583890078948787 1 0.101844608783722 experiment 0.832219842102426 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SET ENSG00000119335 CDS Human protein_coding chr9:131456045 chr9:131456028 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_32064 0 0 1 1 1 Ribosome 1 0.500231643923679 1 0.999536712152641 hm5C_site_32095 DeepMRMD:1;iRNA_m5C:0.999536712152641 32096 chr7 90355898 90355898 1 + G A SARC 90355889 + 90355869 90355909 41 TTCTTTTCTCAGATATGTGTCACAAAGATGTCTACACGGAA TTCTTTTCTCAGATATGTGTCACAAAGATATCTACACGGAA < 41bp 1 0.322402928733725 1 0.207277059555054 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355889 chr7:90355898 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_32065 0 0 1 0 1 Nucleus 1 0.500231649045175 1 0.999536701909651 hm5C_site_32096 DeepMRMD:1;iRNA_m5C:0.999536701909651 32097 chr7 90355898 90355898 1 + G A SARC 90355891 + 90355871 90355911 41 CTTTTCTCAGATATGTGTCACAAAGATGTCTACACGGAACT CTTTTCTCAGATATGTGTCACAAAGATATCTACACGGAACT < 41bp 1 0.151263178761801 1 0.115098297595978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355891 chr7:90355898 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_32066 0 0 1 0 1 Nucleus 1 0.500231643922574 1 0.999536712154852 hm5C_site_32097 DeepMRMD:1;iRNA_m5C:0.999536712154852 32098 chr7 90355898 90355898 1 + G A SARC 90355900 + 90355880 90355920 41 GATATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAA GATATGTGTCACAAAGATATCTACACGGAACTGCCAGGGAA < 41bp 1 0.616901057648882 1 0.158428400754929 experiment 0.766197884702236 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355900 chr7:90355898 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_32067 0 0 1 0 1 Nucleus 1 0.500231645719876 1 0.999536708560248 hm5C_site_32098 DeepMRMD:1;iRNA_m5C:0.999536708560248 32099 chr7 90355898 90355898 1 + G A SARC 90355903 + 90355883 90355923 41 ATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAATGG ATGTGTCACAAAGATATCTACACGGAACTGCCAGGGAATGG < 41bp 1 0.36567798842254 1 0.0842422246932983 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355903 chr7:90355898 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_32068 0 0 1 0 1 Nucleus 1 0.500231647426598 1 0.999536705146804 hm5C_site_32099 DeepMRMD:1;iRNA_m5C:0.999536705146804 32100 chr7 90355898 90355898 1 + G A SARC 90355905 + 90355885 90355925 41 GTGTCACAAAGATGTCTACACGGAACTGCCAGGGAATGGAC GTGTCACAAAGATATCTACACGGAACTGCCAGGGAATGGAC < 41bp 1 0.435889989223437 1 0.21717044711113 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355905 chr7:90355898 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_32069 0 0 1 0 1 Nucleus 1 0.500231643535852 1 0.999536712928295 hm5C_site_32100 DeepMRMD:1;iRNA_m5C:0.999536712928295 32101 chr15 90617472 90617472 1 + G A SARC 90617476 + 90617456 90617496 41 AAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGT AAGGGCAACCTGAGCCAGCACATGAAGGTCAAGCATGGCGT < 41bp 1 0.52261426037321 1 0.431736260652542 experiment 0.95477147925358 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90617476 chr15:90617472 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_32070 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_32101 DeepMRMD:1;iRNA_m5C:0.999536712157815 32102 chr1 7796530 7796530 1 + G A SARC 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCCGCAGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG < 41bp 1 0.29064872734419 1 0.169453322887421 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796530 nonsynonymous SNV 0.898 4 7 hm5C_associated_SNPs_32073 1 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32102 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 32103 chr16 69353364 69353364 1 + G A SARC 69353363 + 69353343 69353383 41 AAATCCTACCTGGCCAAAGCCGTGGCAACAGAGGCCAACAA AAATCCTACCTGGCCAAAGCCATGGCAACAGAGGCCAACAA < 41bp 1 0.577511755063497 1 0.488075524568558 experiment 0.844976489873006 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69353363 chr16:69353364 nonsynonymous SNV 0.705 5 22 hm5C_associated_SNPs_32076 0 0 1 0 2 Cytosol 1 0.500231643919967 1 0.999536712160066 hm5C_site_32103 DeepMRMD:1;iRNA_m5C:0.999536712160066 32104 chr17 73750863 73750863 1 + G T SARC 73750868 + 73750848 73750888 41 ACCACACTGCCCAGGGACTACTCCACCCTCACCTCCGTCTC ACCACACTGCCCAGGTACTACTCCACCCTCACCTCCGTCTC < 41bp 1 0.667696115470646 1 0.900074481964111 experiment 0.664607769058708 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73750868 chr17:73750863 nonsynonymous SNV 0.882 3 16 hm5C_associated_SNPs_32077 0 0 0 0 1 Cytosol 1 0.50023164392476 0.199851036071778 0.99953671215048 hm5C_site_32104 DeepMRMD:0.199851036071778;iRNA_m5C:0.99953671215048 32105 chr19 6362546 6362546 1 + C A SARC 6362549 + 6362529 6362569 41 ATCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTC ATCCACATGTACATCAAAAGCCCTGGTGAGCAGGGTCTTTC < 41bp 1 0.299855188170236 1 0.03522127866745 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6362549 chr19:6362546 nonsynonymous SNV 0.998 4 18 hm5C_associated_SNPs_32078 0 0 1 0 2 Cytosol 1 0.500230643399433 1 0.999538713201133 hm5C_site_32105 DeepMRMD:1;iRNA_m5C:0.999538713201133 32106 chr19 6362546 6362546 1 + C A SARC 6362550 + 6362530 6362570 41 TCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTCC TCCACATGTACATCAAAAGCCCTGGTGAGCAGGGTCTTTCC < 41bp 1 0.230417660114939 1 0.0747759640216827 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6362550 chr19:6362546 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_32079 0 0 1 0 2 Cytosol 1 0.500231643921088 1 0.999536712157823 hm5C_site_32106 DeepMRMD:1;iRNA_m5C:0.999536712157823 32107 chr1 3342252 3342252 1 + G T SARC 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTGCAACCGCTTCTTCGGGCAGCAGACCAA < 41bp 1 0.113809518126719 1 0.252065658569336 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342252 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_32080 0 0 0 0 1 Nucleus 1 0.500231653632851 1 0.999536692734297 hm5C_site_32107 DeepMRMD:1;iRNA_m5C:0.999536692734297 32108 chr1 6271128 6271128 1 + G T SARC 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCCACTTCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG < 41bp 1 0.339210774904841 1 0.271536767482758 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271128 synonymous SNV . 0 7 hm5C_associated_SNPs_32081 0 0 1 0 2 Nucleus 1 0.500231643931976 1 0.999536712136048 hm5C_site_32108 DeepMRMD:1;iRNA_m5C:0.999536712136048 32109 chr1 11333758 11333758 1 + G T SARC 11333762 + 11333742 11333782 41 GCCCTGAGGCCCTGGAGCTTCAGTGCCTCACTCACACCGGT GCCCTGAGGCCCTGGATCTTCAGTGCCTCACTCACACCGGT < 41bp 1 0.671296932148969 1 0.901836276054382 experiment 0.657406135702062 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBIAD1 ENSG00000120942 CDS Human protein_coding chr1:11333762 chr1:11333758 nonsynonymous SNV 1.000 5 17 hm5C_associated_SNPs_32082 0 0 1 0 0 Endoplasmic reticulum 1 0.500231652106715 0.196327447891236 0.99953669578657 hm5C_site_32109 DeepMRMD:0.196327447891236;iRNA_m5C:0.99953669578657 32110 chr1 22307658 22307658 1 + G T SARC 22307639 + 22307619 22307659 41 GACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGC GACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTGTC < 41bp 1 0.658053133704297 1 0.784143924713135 experiment 0.683893732591407 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307639 chr1:22307658 nonsynonymous SNV 0.040 0 40 hm5C_associated_SNPs_32083 0 0 0 0 1 unknown 1 0.500231702428116 0.43171215057373 0.999536595143768 hm5C_site_32110 DeepMRMD:0.43171215057373;iRNA_m5C:0.999536595143768 32111 chr1 22307658 22307658 1 + G T SARC 22307645 + 22307625 22307665 41 TTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGG TTTGTGCATCCACTCTGGAACCGCTCGTGTGTGTCCTGTGG < 41bp 1 0.113545769388844 1 0.0438969135284424 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307645 chr1:22307658 nonsynonymous SNV 0.040 0 34 hm5C_associated_SNPs_32084 0 0 0 0 1 unknown 1 0.500231604034797 1 0.999536791930407 hm5C_site_32111 DeepMRMD:1;iRNA_m5C:0.999536791930407 32112 chr1 22307658 22307658 1 + G T SARC 22307646 + 22307626 22307666 41 TTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGG TTGTGCATCCACTCTGGAACCGCTCGTGTGTGTCCTGTGGG < 41bp 1 0.200037702327094 1 0.149332851171494 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307646 chr1:22307658 nonsynonymous SNV 0.040 0 33 hm5C_associated_SNPs_32085 0 0 0 0 1 unknown 1 0.501420313636356 1 0.997159372727288 hm5C_site_32112 DeepMRMD:1;iRNA_m5C:0.997159372727288 32113 chr1 22307658 22307658 1 + G T SARC 22307648 + 22307628 22307668 41 GTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGGTG GTGCATCCACTCTGGAACCGCTCGTGTGTGTCCTGTGGGTG < 41bp 1 0.42932980618573 1 0.215864956378937 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307648 chr1:22307658 nonsynonymous SNV 0.040 0 31 hm5C_associated_SNPs_32086 0 0 0 0 1 unknown 1 0.500625162852434 1 0.998749674295132 hm5C_site_32113 DeepMRMD:1;iRNA_m5C:0.998749674295132 32114 chr1 36026484 36026484 1 + G T SARC 36026504 + 36026484 36026524 41 GCCCCTCTTTTTGCCCCCGACAACCGTGCCCCCTGAATGCT TCCCCTCTTTTTGCCCCCGACAACCGTGCCCCCTGAATGCT < 41bp 1 0.187241323925852 1 0.104364514350891 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36026504 chr1:36026484 synonymous SNV . 0 1 hm5C_associated_SNPs_32087 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_32114 DeepMRMD:1;iRNA_m5C:0.999536712157815 32115 chr1 109801331 109801331 1 + G T SARC 109801320 + 109801300 109801340 41 CGGTGGGCCAGCCGCCAGGGCCCGGGGGCGGGCCGCCCTTC CGGTGGGCCAGCCGCCAGGGCCCGGGGGCGGTCCGCCCTTC < 41bp 1 0.539340468650066 1 0.81816828250885 experiment 0.921319062699867 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801320 chr1:109801331 synonymous SNV . 0 32 hm5C_associated_SNPs_32088 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.3636634349823 0.999536712157815 hm5C_site_32115 DeepMRMD:0.3636634349823;iRNA_m5C:0.999536712157815 32116 chr1 109801331 109801331 1 + G T SARC 109801321 + 109801301 109801341 41 GGTGGGCCAGCCGCCAGGGCCCGGGGGCGGGCCGCCCTTCC GGTGGGCCAGCCGCCAGGGCCCGGGGGCGGTCCGCCCTTCC < 41bp 1 0.606411569277825 1 0.853824496269226 experiment 0.787176861444351 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801321 chr1:109801331 synonymous SNV . 0 31 hm5C_associated_SNPs_32089 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.292351007461548 0.999536712157815 hm5C_site_32116 DeepMRMD:0.292351007461548;iRNA_m5C:0.999536712157815 32117 chr1 109801331 109801331 1 + G T SARC 109801328 + 109801308 109801348 41 CAGCCGCCAGGGCCCGGGGGCGGGCCGCCCTTCCTGCCCTC CAGCCGCCAGGGCCCGGGGGCGGTCCGCCCTTCCTGCCCTC < 41bp 1 0.091726862903471 1 0.686029076576233 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801328 chr1:109801331 synonymous SNV . 0 24 hm5C_associated_SNPs_32091 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 0.627941846847534 0.999536712157815 hm5C_site_32117 DeepMRMD:0.627941846847534;iRNA_m5C:0.999536712157815 32118 chr1 214814510 214814510 1 + G T SARC 214814517 + 214814497 214814537 41 ACTCTCTAAAGGAGCTACAACTTTTATCCGAAACCCTAAGC ACTCTCTAAAGGATCTACAACTTTTATCCGAAACCCTAAGC < 41bp 1 0.0416552867421343 1 0.0613869726657867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214814517 chr1:214814510 nonsynonymous SNV 0.992 2 14 hm5C_associated_SNPs_32092 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32118 DeepMRMD:1;iRNA_m5C:0.999536712157815 32119 chr1 214814510 214814510 1 + G T SARC 214814524 + 214814504 214814544 41 AAAGGAGCTACAACTTTTATCCGAAACCCTAAGCTTGGAGA AAAGGATCTACAACTTTTATCCGAAACCCTAAGCTTGGAGA < 41bp 1 0.185990344929279 1 0.330145359039307 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214814524 chr1:214814510 nonsynonymous SNV 0.992 2 7 hm5C_associated_SNPs_32093 0 0 1 0 0 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_32119 DeepMRMD:1;iRNA_m5C:0.999536712157818 32120 chr1 214814510 214814510 1 + G T SARC 214814525 + 214814505 214814545 41 AAGGAGCTACAACTTTTATCCGAAACCCTAAGCTTGGAGAA AAGGATCTACAACTTTTATCCGAAACCCTAAGCTTGGAGAA < 41bp 1 0.339556240226753 1 0.474658250808716 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214814525 chr1:214814510 nonsynonymous SNV 0.992 2 6 hm5C_associated_SNPs_32094 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32120 DeepMRMD:1;iRNA_m5C:0.999536712157815 32121 chr1 214814510 214814510 1 + G T SARC 214814530 + 214814510 214814550 41 GCTACAACTTTTATCCGAAACCCTAAGCTTGGAGAAGAAAG TCTACAACTTTTATCCGAAACCCTAAGCTTGGAGAAGAAAG < 41bp 1 0.0855720573417743 1 0.0943727493286133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214814530 chr1:214814510 nonsynonymous SNV 0.992 2 1 hm5C_associated_SNPs_32095 0 0 1 0 0 Nucleus 1 0.500231644260519 1 0.999536711478963 hm5C_site_32121 DeepMRMD:1;iRNA_m5C:0.999536711478963 32122 chr2 85273273 85273273 1 + G T SARC 85273266 + 85273246 85273286 41 GACATGTACGTAGAATGTTTCACCCTGGCCGGGGATTAGGA GACATGTACGTAGAATGTTTCACCCTGTCCGGGGATTAGGA < 41bp 1 0.293325489497567 1 0.0879122316837311 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCMF1 ENSG00000176407 CDS Human protein_coding chr2:85273266 chr2:85273273 nonsynonymous SNV 0.999 4 28 hm5C_associated_SNPs_32096 0 0 1 0 0 Cytosol 1 0.500231649899706 1 0.999536700200587 hm5C_site_32122 DeepMRMD:1;iRNA_m5C:0.999536700200587 32123 chr2 153575292 153575292 1 + G T SARC 153575297 + 153575277 153575317 41 GGATGCGACCAAGTGGCCCGCGACCTGCGGGCGGAGTTCTC GGATGCGACCAAGTGTCCCGCGACCTGCGGGCGGAGTTCTC < 41bp 1 0.545044528804107 1 0.153365701436996 experiment 0.909910942391786 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARL6IP6 ENSG00000177917 CDS Human protein_coding chr2:153575297 chr2:153575292 nonsynonymous SNV 0.942 1 16 hm5C_associated_SNPs_32097 0 0 1 0 0 Ribosome 1 0.500231642823238 1 0.999536714353524 hm5C_site_32123 DeepMRMD:1;iRNA_m5C:0.999536714353524 32124 chr3 45043081 45043081 1 + G T SARC 45043087 + 45043067 45043107 41 CCATTGCTGTAAAGGCTGCTCTCTTCAATACAAGGTAAGTC CCATTGCTGTAAAGTCTGCTCTCTTCAATACAAGGTAAGTC < 41bp 1 0.193335612932027 1 0.0979932844638824 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45043087 chr3:45043081 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_32098 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32124 DeepMRMD:1;iRNA_m5C:0.999536712157815 32125 chr3 49736468 49736468 1 + G T SARC 49736459 + 49736439 49736479 41 TTGAGAACCTGTCCAGGGGCCTGGGTATGGCCTACTTCCCA TTGAGAACCTGTCCAGGGGCCTGGGTATGTCCTACTTCCCA < 41bp 1 0.547340548490713 1 0.213052839040756 experiment 0.905318903018574 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49736459 chr3:49736468 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_32099 0 0 1 0 1 Nucleus 1 0.500230643930221 1 0.999538712139558 hm5C_site_32125 DeepMRMD:1;iRNA_m5C:0.999538712139558 32126 chr4 3174765 3174765 1 + G T SARC 3174757 + 3174737 3174777 41 AGTGTGAGGCCAGGCTTGTACCACTACTGCTTCATGGCCCC AGTGTGAGGCCAGGCTTGTACCACTACTTCTTCATGGCCCC < 41bp 1 0.154702768963487 1 0.642927348613739 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3174757 chr4:3174765 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_32100 0 0 1 0 1 Cytosol 1 0.500231643927853 0.714145302772522 0.999536712144294 hm5C_site_32126 DeepMRMD:0.714145302772522;iRNA_m5C:0.999536712144294 32127 chr4 88036071 88036071 1 + G T SARC 88036091 + 88036071 88036111 41 GCGAAGGACAATGTGGAGGACAGGACCCCTGAGCACTTTGC TCGAAGGACAATGTGGAGGACAGGACCCCTGAGCACTTTGC < 41bp 1 0.689159972371267 1 0.454369366168976 experiment 0.621680055257466 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AFF1 ENSG00000172493 CDS Human protein_coding chr4:88036091 chr4:88036071 nonsynonymous SNV 0.012 0 1 hm5C_associated_SNPs_32102 0 0 1 0 0 Nucleus 1 0.500231616528079 1 0.999536766943842 hm5C_site_32127 DeepMRMD:1;iRNA_m5C:0.999536766943842 32128 chr5 40979946 40979946 1 + G T SARC 40979964 + 40979944 40979984 41 CAGCTGTACTCTGCCTGCCTCAGCTGAGAAAGCTTGTGGTG CATCTGTACTCTGCCTGCCTCAGCTGAGAAAGCTTGTGGTG < 41bp 1 0.65009802606097 1 0.83301830291748 experiment 0.69980394787806 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control C7 ENSG00000112936 CDS Human protein_coding chr5:40979964 chr5:40979946 nonsynonymous SNV 0.905 3 3 hm5C_associated_SNPs_32103 0 0 0 0 0 Endoplasmic reticulum 1 0.500231654085478 0.33396339416504 0.999536691829045 hm5C_site_32128 DeepMRMD:0.33396339416504;iRNA_m5C:0.999536691829045 32129 chr5 102345558 102345558 1 + G T SARC 102345555 + 102345535 102345575 41 GGGGAAATTATAGACATCTTCAAGCCAGTGCGCAAGGTATT GGGGAAATTATAGACATCTTCAATCCAGTGCGCAAGGTATT < 41bp 1 0.0696716078997132 1 0.0909560024738312 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102345555 chr5:102345558 nonsynonymous SNV 0.398 1 24 hm5C_associated_SNPs_32104 0 0 0 0 1 Ribosome 1 0.500231644474728 1 0.999536711050544 hm5C_site_32129 DeepMRMD:1;iRNA_m5C:0.999536711050544 32130 chr5 176720902 176720902 1 + G T SARC 176720884 + 176720864 176720904 41 CATCTGCGGGAAGGAAGCAGCCTCCTTCTGTGAGATGTGCC CATCTGCGGGAAGGAAGCAGCCTCCTTCTGTGAGATGTTCC < 41bp 1 0.0216310530007285 1 0.141173601150513 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176720884 chr5:176720902 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_32105 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32130 DeepMRMD:1;iRNA_m5C:0.999536712157815 32131 chr6 35392260 35392260 1 + C T SARC 35392256 + 35392236 35392276 41 CAGTGGAGACCGTGCGGGAGCTCACTGAGTTCGCCAAGAGC CAGTGGAGACCGTGCGGGAGCTCATTGAGTTCGCCAAGAGC < 41bp 1 0.300264349608787 1 0.087158203125 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPARD ENSG00000112033 CDS Human protein_coding chr6:35392256 chr6:35392260 nonsynonymous SNV 0.704 3 25 hm5C_associated_SNPs_32106 0 0 1 0 0 Cytosol 1 0.500231643922115 1 0.999536712155771 hm5C_site_32131 DeepMRMD:1;iRNA_m5C:0.999536712155771 32132 chr6 35392260 35392260 1 + C T SARC 35392258 + 35392238 35392278 41 GTGGAGACCGTGCGGGAGCTCACTGAGTTCGCCAAGAGCAT GTGGAGACCGTGCGGGAGCTCATTGAGTTCGCCAAGAGCAT < 41bp 1 0.2338735982404 1 0.118626058101654 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPARD ENSG00000112033 CDS Human protein_coding chr6:35392258 chr6:35392260 nonsynonymous SNV 0.704 3 23 hm5C_associated_SNPs_32107 0 0 1 0 0 Cytosol 1 0.500231747748224 1 0.999536504503553 hm5C_site_32132 DeepMRMD:1;iRNA_m5C:0.999536504503553 32133 chr6 144875988 144875988 1 + G T SARC 144875991 + 144875971 144876011 41 TCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAA TCTATATTCTTCAGCAATCCCGACGGGATCCACTCACCAAA < 41bp 1 0.2944715901601 1 0.609919309616089 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144875991 chr6:144875988 nonsynonymous SNV 0.986 0 18 hm5C_associated_SNPs_32108 0 0 1 0 1 Nucleus 1 0.500231643921093 0.780161380767822 0.999536712157815 hm5C_site_32133 DeepMRMD:0.780161380767822;iRNA_m5C:0.999536712157815 32134 chr6 155139673 155139673 1 + G T SARC 155139674 + 155139654 155139694 41 TCGACAAGATGCATTTCGAGCTCTTCAGAAACTCAGTTCTG TCGACAAGATGCATTTCGATCTCTTCAGAAACTCAGTTCTG < 41bp 1 0.205323115996052 1 0.281758189201355 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155139674 chr6:155139673 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_32109 0 0 1 0 2 Nucleus 1 0.500234928286461 1 0.999530143427078 hm5C_site_32134 DeepMRMD:1;iRNA_m5C:0.999530143427078 32135 chr7 79842153 79842153 1 + G T SARC 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAAATCAAAAAGATCCCTCTCACTATATGCTATCCAG < 41bp 1 0.198893165518322 1 0.0616075396537781 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842153 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_32110 0 0 1 0 1 Cytosol 1 0.500231643920015 1 0.99953671215997 hm5C_site_32135 DeepMRMD:1;iRNA_m5C:0.99953671215997 32136 chr7 91981899 91981899 1 + G T SARC 91981887 + 91981867 91981907 41 AGGGTCAAATACATCTGGATCTGATACACTCAGCTTCCCAT AGGGTCAAATACATCTGGATCTGATACACTCATCTTCCCAT < 41bp 1 0.278014382230421 1 0.0317254662513733 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:91981887 chr7:91981899 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_32111 0 0 1 0 1 Cytosol 1 0.500231651553583 1 0.999536696892835 hm5C_site_32136 DeepMRMD:1;iRNA_m5C:0.999536696892835 32137 chr8 22064422 22064422 1 + G T SARC 22064413 + 22064393 22064433 41 ACCAGTGGTACCATCACCAGCCCCAACTGGCCTGACAAGTA ACCAGTGGTACCATCACCAGCCCCAACTGTCCTGACAAGTA < 41bp 1 0.182847851274181 1 0.578626871109009 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064413 chr8:22064422 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_32112 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.842746257781982 0.999536712157816 hm5C_site_32137 DeepMRMD:0.842746257781982;iRNA_m5C:0.999536712157816 32138 chr8 73921125 73921125 1 + G T SARC 73921113 + 73921093 73921133 41 AGGGGCAGTACCCAAGCGAGCCATTTAACATGGCGGAGGAT AGGGGCAGTACCCAAGCGAGCCATTTAACATGTCGGAGGAT < 41bp 1 0.224175959567559 1 0.0396697521209717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TERF1 ENSG00000147601 CDS Human protein_coding chr8:73921113 chr8:73921125 nonsynonymous SNV 0.544 4 33 hm5C_associated_SNPs_32114 0 0 1 0 0 Nucleus 1 0.500231644255191 1 0.999536711489619 hm5C_site_32138 DeepMRMD:1;iRNA_m5C:0.999536711489619 32139 chr8 124787441 124787441 1 + G T SARC 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACATCCGAGATCATCTCATGCT < 41bp 1 0.165943649295518 1 0.0782014131546021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787441 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_32115 0 0 0 0 2 Ribosome 1 0.500231643833393 1 0.999536712333214 hm5C_site_32139 DeepMRMD:1;iRNA_m5C:0.999536712333214 32140 chr8 145735842 145735842 1 + G T SARC 145735855 + 145735835 145735875 41 GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT GTGGTCTTCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT < 41bp 1 0.222983886619281 1 0.0484377145767212 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735855 chr8:145735842 nonsynonymous SNV 0.667 0 8 hm5C_associated_SNPs_32116 0 0 1 0 2 Ribosome 1 0.500231643920804 1 0.999536712158392 hm5C_site_32140 DeepMRMD:1;iRNA_m5C:0.999536712158392 32141 chr8 145735842 145735842 1 + G T SARC 145735858 + 145735838 145735878 41 GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT GTCTTCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT < 41bp 1 0.159799327565676 1 0.269829928874969 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735858 chr8:145735842 nonsynonymous SNV 0.667 0 5 hm5C_associated_SNPs_32117 0 0 1 0 2 Ribosome 1 0.500231643945092 1 0.999536712109817 hm5C_site_32141 DeepMRMD:1;iRNA_m5C:0.999536712109817 32142 chr9 35733267 35733267 1 + G T SARC 35733277 + 35733257 35733297 41 ATATGGAGGAGCTGGCAGAGCAGGTACTTGACTTGATTTTC ATATGGAGGATCTGGCAGAGCAGGTACTTGACTTGATTTTC < 41bp 1 0.648718591998564 1 0.468078374862671 experiment 0.702562816002872 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733277 chr9:35733267 nonsynonymous SNV 0.007 0 11 hm5C_associated_SNPs_32118 0 0 1 0 2 Endoplasmic reticulum 1 0.500231654088056 1 0.999536691823889 hm5C_site_32142 DeepMRMD:1;iRNA_m5C:0.999536691823889 32143 chr10 112335143 112335143 1 + G T SARC 112335144 + 112335124 112335164 41 GTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGTG GTCATCTTCGTCCAGAACATCGGTTGGCTTTATTGCATGTG < 41bp 1 0.284311136062667 1 0.129537284374237 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112335144 chr10:112335143 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_32119 0 0 1 0 2 Ribosome 1 0.500231643920913 1 0.999536712158174 hm5C_site_32143 DeepMRMD:1;iRNA_m5C:0.999536712158174 32144 chr11 61106782 61106782 1 + G T SARC 61106796 + 61106776 61106816 41 GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT GGCCTGTCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT < 41bp 1 0.609237040671439 1 0.572731852531433 experiment 0.781525918657122 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106796 chr11:61106782 nonsynonymous SNV 0.901 4 7 hm5C_associated_SNPs_32120 0 0 1 0 1 Cytosol 1 0.500231643923997 0.854536294937134 0.999536712152005 hm5C_site_32144 DeepMRMD:0.854536294937134;iRNA_m5C:0.999536712152005 32145 chr11 61722638 61722638 1 + G T SARC 61722649 + 61722629 61722669 41 ATTGCGACAGCTACATCCAGCTCATCCCCATTTCCTTCGTG ATTGCGACATCTACATCCAGCTCATCCCCATTTCCTTCGTG < 41bp 1 0.186382768807762 1 0.02586430311203 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61722649 chr11:61722638 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_32122 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32145 DeepMRMD:1;iRNA_m5C:0.999536712157815 32146 chr11 76892613 76892613 1 + G T SARC 76892615 + 76892595 76892635 41 GCCTGCCAGGCCAGGAGGGCCAGGCACCTAGTGGCTTTGAG GCCTGCCAGGCCAGGAGGTCCAGGCACCTAGTGGCTTTGAG < 41bp 1 0.315603012998236 1 0.536474943161011 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO7A ENSG00000137474 CDS Human protein_coding chr11:76892615 chr11:76892613 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_32123 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 0.927050113677978 0.999536712157814 hm5C_site_32146 DeepMRMD:0.927050113677978;iRNA_m5C:0.999536712157814 32147 chr11 120957735 120957735 1 + G T SARC 120957753 + 120957733 120957773 41 CAGCTCTCGGGCATTGCATTCCTTTGGCATTAGGGATGGAG CATCTCTCGGGCATTGCATTCCTTTGGCATTAGGGATGGAG < 41bp 1 0.0365687017525604 1 0.0978855490684509 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBCEL ENSG00000154114 CDS Human protein_coding chr11:120957753 chr11:120957735 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_32124 0 0 1 1 0 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_32147 DeepMRMD:1;iRNA_m5C:0.999536712157817 32148 chr12 53663544 53663544 1 + G T SARC 53663559 + 53663539 53663579 41 CATCAGCGCAGTGGAGAAGGCTCACAGTTACCTAAGGAACA CATCATCGCAGTGGAGAAGGCTCACAGTTACCTAAGGAACA < 41bp 1 0.255442399429148 1 0.0633672475814819 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663559 chr12:53663544 nonsynonymous SNV 0.002 0 6 hm5C_associated_SNPs_32125 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32148 DeepMRMD:1;iRNA_m5C:0.999536712157815 32149 chr12 123102908 123102908 1 + G T SARC 123102893 + 123102873 123102913 41 TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGCGTGG TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAATCGTGG < 41bp 1 0.0589275157674176 1 0.03975909948349 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123102893 chr12:123102908 nonsynonymous SNV 0.978 1 36 hm5C_associated_SNPs_32126 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32149 DeepMRMD:1;iRNA_m5C:0.999536712157815 32150 chr15 63073420 63073420 1 + G T SARC 63073407 + 63073387 63073427 41 CAGACGACTGTGGTTAAATACTCCAAAGCCATTGCGGTGAC CAGACGACTGTGGTTAAATACTCCAAAGCCATTTCGGTGAC < 41bp 1 0.667947327771461 1 0.969075441360474 experiment 0.664105344457077 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63073407 chr15:63073420 nonsynonymous SNV 0.998 3 34 hm5C_associated_SNPs_32127 0 0 0 0 2 Nucleus 1 0.500231698805078 0.0618491172790521 0.999536602389844 hm5C_site_32150 DeepMRMD:0.0618491172790521;iRNA_m5C:0.999536602389844 32151 chr15 93482838 93482838 1 + G T SARC 93482839 + 93482819 93482859 41 AACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAG AACCTCGTGTTAAAAAGCATCCGAAGACTCAGCGTGGAAAG < 41bp 1 0.274701441012883 1 0.0412566363811493 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482839 chr15:93482838 nonsynonymous SNV 0.982 0 20 hm5C_associated_SNPs_32128 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32151 DeepMRMD:1;iRNA_m5C:0.999536712157815 32152 chr15 93482838 93482838 1 + G T SARC 93482840 + 93482820 93482860 41 ACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGA ACCTCGTGTTAAAAAGCATCCGAAGACTCAGCGTGGAAAGA < 41bp 1 0.164663951304198 1 0.364522397518158 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482840 chr15:93482838 nonsynonymous SNV 0.982 0 19 hm5C_associated_SNPs_32129 0 0 1 0 1 Nucleus 1 0.500231781132938 1 0.999536437734124 hm5C_site_32152 DeepMRMD:1;iRNA_m5C:0.999536437734124 32153 chr15 93482838 93482838 1 + G T SARC 93482846 + 93482826 93482866 41 TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAA TGTTAAAAAGCATCCGAAGACTCAGCGTGGAAAGAGAAAAA < 41bp 1 0.289824473176692 1 0.234992265701294 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482846 chr15:93482838 nonsynonymous SNV 0.982 0 13 hm5C_associated_SNPs_32130 0 0 1 0 1 Nucleus 1 0.500231643785989 1 0.999536712428023 hm5C_site_32153 DeepMRMD:1;iRNA_m5C:0.999536712428023 32154 chr15 93482838 93482838 1 + G T SARC 93482848 + 93482828 93482868 41 TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAAAG TTAAAAAGCATCCGAAGACTCAGCGTGGAAAGAGAAAAAAG < 41bp 1 0.519249240924701 1 0.508222341537476 experiment 0.961501518150598 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482848 chr15:93482838 nonsynonymous SNV 0.982 0 11 hm5C_associated_SNPs_32131 0 0 1 0 1 Nucleus 1 0.500253472240262 0.983555316925048 0.999493055519477 hm5C_site_32154 DeepMRMD:0.983555316925048;iRNA_m5C:0.999493055519477 32155 chr16 697452 697452 1 + G T SARC 697463 + 697443 697483 41 GTGTGAATGGCCGGCGGGCCCCCTCCACGTCCCCATCCTTC GTGTGAATGTCCGGCGGGCCCCCTCCACGTCCCCATCCTTC < 41bp 1 0.120143591954587 1 0.033041387796402 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697463 chr16:697452 nonsynonymous SNV 0.275 2 10 hm5C_associated_SNPs_32132 0 0 1 0 1 Cytosol 1 0.500231674009102 1 0.999536651981796 hm5C_site_32155 DeepMRMD:1;iRNA_m5C:0.999536651981796 32156 chr16 67315532 67315532 1 + G T SARC 67315518 + 67315498 67315538 41 TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTGCCTTCC TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTTCCTTCC < 41bp 1 0.545577837898003 1 0.169688165187836 experiment 0.908844324203995 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67315518 chr16:67315532 synonymous SNV . 0 35 hm5C_associated_SNPs_32133 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32156 DeepMRMD:1;iRNA_m5C:0.999536712157815 32157 chr17 21319356 21319356 1 + G T SARC 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAATCCGCGGG < 41bp 1 0.642769190994953 1 0.42063045501709 experiment 0.714461618010095 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319356 nonsynonymous SNV 0.980 4 34 hm5C_associated_SNPs_32134 0 0 0 0 0 unknown 1 0.500231644011316 1 0.999536711977369 hm5C_site_32157 DeepMRMD:1;iRNA_m5C:0.999536711977369 32158 chr17 37676266 37676266 1 + G T SARC 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCCTAGTAATCGGTGCACAGCTGAACAGACCCTACA < 41bp 1 0.185189673206685 1 0.155174732208252 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676266 nonsynonymous SNV 0.983 1 15 hm5C_associated_SNPs_32135 0 0 1 0 1 Nucleus 1 0.500231644332299 1 0.999536711335401 hm5C_site_32158 DeepMRMD:1;iRNA_m5C:0.999536711335401 32159 chr18 19433159 19433159 1 + G T SARC 19433161 + 19433141 19433181 41 TTCTTTTTCAACCCTGTGGCCACATGTGTGCTTGTGAGAGT TTCTTTTTCAACCCTGTGTCCACATGTGTGCTTGTGAGAGT < 41bp 1 0.27675902536511 1 0.531984388828278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MIB1 ENSG00000101752 CDS Human protein_coding chr18:19433161 chr18:19433159 nonsynonymous SNV 0.974 4 19 hm5C_associated_SNPs_32136 0 0 1 0 1 Nucleus 1 0.50023165101578 0.936031222343444 0.999536697968439 hm5C_site_32159 DeepMRMD:0.936031222343444;iRNA_m5C:0.999536697968439 32160 chr19 13049547 13049547 1 + G T SARC 13049544 + 13049524 13049564 41 CTCCTCGGCCTGGCCGTCGCCGAGCCTGCCGTCTACTTCAA CTCCTCGGCCTGGCCGTCGCCGATCCTGCCGTCTACTTCAA < 41bp 1 0.278674740648601 1 0.426328748464584 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049544 chr19:13049547 nonsynonymous SNV 0.054 0 24 hm5C_associated_SNPs_32137 0 0 1 0 1 Ribosome 1 0.500231642345853 1 0.999536715308294 hm5C_site_32160 DeepMRMD:1;iRNA_m5C:0.999536715308294 32161 chr19 13049547 13049547 1 + G T SARC 13049553 + 13049533 13049573 41 CTGGCCGTCGCCGAGCCTGCCGTCTACTTCAAGGAGCAGTT CTGGCCGTCGCCGATCCTGCCGTCTACTTCAAGGAGCAGTT < 41bp 1 0.227912440288607 1 0.253037601709366 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049553 chr19:13049547 nonsynonymous SNV 0.054 0 15 hm5C_associated_SNPs_32138 0 0 1 0 1 Ribosome 1 0.500221317626404 1 0.999557364747191 hm5C_site_32161 DeepMRMD:1;iRNA_m5C:0.999557364747191 32162 chr19 34818688 34818688 1 + G T SARC 34818689 + 34818669 34818709 41 TTTCCAGGCATATAAGATAGCTCTGGAAAGCTTAGGACACT TTTCCAGGCATATAAGATATCTCTGGAAAGCTTAGGACACT < 41bp 1 0.268121793064202 1 0.241961508989334 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34818689 chr19:34818688 nonsynonymous SNV 0.999 3 20 hm5C_associated_SNPs_32139 0 0 1 0 2 Cytosol 1 0.500231643918126 1 0.999536712163749 hm5C_site_32162 DeepMRMD:1;iRNA_m5C:0.999536712163749 32163 chr20 46268480 46268480 1 + G T SARC 46268463 + 46268443 46268483 41 GATTATAATACTTCTTTACCCAGACCTGCACTGGGTGGCTC GATTATAATACTTCTTTACCCAGACCTGCACTGGGTGTCTC < 41bp 1 0.270830913291394 1 0.400874137878418 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46268463 chr20:46268480 nonsynonymous SNV 0.008 2 38 hm5C_associated_SNPs_32140 0 0 1 0 1 Ribosome 1 0.500231643921138 1 0.999536712157725 hm5C_site_32163 DeepMRMD:1;iRNA_m5C:0.999536712157725 32164 chr20 60881341 60881341 1 + G T SARC 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA CAACCCCCCGATGCCTGGGGCGCTGGGGGCCATCGGAAGCA < 41bp 1 0.261353017224966 1 0.449165910482407 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881341 nonsynonymous SNV 0.003 2 33 hm5C_associated_SNPs_32141 0 0 1 0 2 Ribosome 1 0.500231643921057 1 0.999536712157886 hm5C_site_32164 DeepMRMD:1;iRNA_m5C:0.999536712157886 32165 chr20 62305426 62305426 1 + G T SARC 62305411 + 62305391 62305431 41 GGCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCGG GGCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCATCGCGG < 41bp 1 0.0808785457484676 1 0.306300401687622 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62305411 chr20:62305426 nonsynonymous SNV 0.002 0 36 hm5C_associated_SNPs_32143 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_32165 DeepMRMD:1;iRNA_m5C:0.999536712157814 32166 chr20 62305426 62305426 1 + G T SARC 62305412 + 62305392 62305432 41 GCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCGGA GCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCATCGCGGA < 41bp 1 0.121687063963287 1 0.0706267058849335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62305412 chr20:62305426 nonsynonymous SNV 0.002 0 35 hm5C_associated_SNPs_32144 0 0 1 0 0 chromatin 1 0.500231641728996 1 0.999536716542008 hm5C_site_32166 DeepMRMD:1;iRNA_m5C:0.999536716542008 32167 chrX 70356355 70356355 1 + G T SARC 70356356 + 70356336 70356376 41 TGCCCCCAGAAGATGAGGAGCCGCCTGCTCCTACCCTGCTA TGCCCCCAGAAGATGAGGATCCGCCTGCTCCTACCCTGCTA < 41bp 1 0.203233091774363 1 0.10926753282547 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70356356 chrX:70356355 nonsynonymous SNV 0.998 3 20 hm5C_associated_SNPs_32146 0 0 1 0 0 Cytosol 1 0.500231643919022 1 0.999536712161956 hm5C_site_32167 DeepMRMD:1;iRNA_m5C:0.999536712161956 32168 chrX 105855824 105855824 1 + G T SARC 105855825 + 105855805 105855845 41 AACTCCCTTCAGAAATAGAGCGCACCAGGAGAAACCAGAGA AACTCCCTTCAGAAATAGATCGCACCAGGAGAAACCAGAGA < 41bp 1 0.292573957725159 1 0.166525989770889 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105855825 chrX:105855824 nonsynonymous SNV 0.986 0 20 hm5C_associated_SNPs_32147 0 0 1 0 0 nucleus 1 0.500231643050441 1 0.999536713899117 hm5C_site_32168 DeepMRMD:1;iRNA_m5C:0.999536713899117 32169 chr1 214814417 214814417 1 + G T SARC 214814421 + 214814401 214814441 41 AGAACAAGGAAAAAGAGCTGCAACTTTTAAATGATAAGGTA AGAACAAGGAAAAAGATCTGCAACTTTTAAATGATAAGGTA < 41bp 1 0.210585460876497 1 0.273178905248642 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214814421 chr1:214814417 nonsynonymous SNV 0.675 2 17 hm5C_associated_SNPs_32149 0 0 1 0 0 Nucleus 1 0.500247584639238 1 0.999504830721524 hm5C_site_32169 DeepMRMD:1;iRNA_m5C:0.999504830721524 32170 chr2 32613926 32613926 1 + G T SARC 32613943 + 32613923 32613963 41 GTGGCGTCCTCAGTGATGGACAGATTGTCTTACCTCTTACC GTGTCGTCCTCAGTGATGGACAGATTGTCTTACCTCTTACC < 41bp 1 0.108504247592956 1 0.581556856632233 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32613943 chr2:32613926 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_32150 0 0 1 0 1 Nucleus 1 0.500241914211167 0.836886286735534 0.999516171577666 hm5C_site_32170 DeepMRMD:0.836886286735534;iRNA_m5C:0.999516171577666 32171 chr3 148559692 148559692 1 + G T SARC 148559686 + 148559666 148559706 41 CAGAGAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAA CAGAGAGTGGATTTCTCCTGCATTCTTCCAGTGGTTTGTAA < 41bp 1 0.0689464289172506 1 0.0376958549022675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559686 chr3:148559692 nonsynonymous SNV 0.991 4 27 hm5C_associated_SNPs_32151 0 0 0 0 2 exosome 1 0.500231643957073 1 0.999536712085853 hm5C_site_32171 DeepMRMD:1;iRNA_m5C:0.999536712085853 32172 chr3 148559692 148559692 1 + G T SARC 148559690 + 148559670 148559710 41 GAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGA GAGTGGATTTCTCCTGCATTCTTCCAGTGGTTTGTAAGAGA < 41bp 1 0.206935110731745 1 0.349096059799194 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559690 chr3:148559692 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_32152 0 0 0 0 2 exosome 1 0.500231645664508 1 0.999536708670985 hm5C_site_32172 DeepMRMD:1;iRNA_m5C:0.999536708670985 32173 chr3 148559692 148559692 1 + G T SARC 148559693 + 148559673 148559713 41 TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGT TGGATTTCTCCTGCATTCTTCCAGTGGTTTGTAAGAGAGGT < 41bp 1 0.189981037710662 1 0.671618700027466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559693 chr3:148559692 nonsynonymous SNV 0.991 4 20 hm5C_associated_SNPs_32153 0 0 0 0 2 exosome 1 0.500231643953737 0.656762599945068 0.999536712092527 hm5C_site_32173 DeepMRMD:0.656762599945068;iRNA_m5C:0.999536712092527 32174 chr3 148559692 148559692 1 + G T SARC 148559694 + 148559674 148559714 41 GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGTC GGATTTCTCCTGCATTCTTCCAGTGGTTTGTAAGAGAGGTC < 41bp 1 0.47666614911999 1 0.550727605819702 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559694 chr3:148559692 nonsynonymous SNV 0.991 4 19 hm5C_associated_SNPs_32154 0 0 0 0 2 exosome 1 0.500231643261624 0.898544788360596 0.999536713476751 hm5C_site_32174 DeepMRMD:0.898544788360596;iRNA_m5C:0.999536713476751 32175 chr5 134130594 134130594 1 + G T SARC 134130604 + 134130584 134130624 41 TATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGG TATGTTTTCATCTACTTTCCCCAGAGCTATGGAGGCTTTGG < 41bp 1 0.642094958973777 1 0.502299308776855 experiment 0.715810082052446 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130604 chr5:134130594 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_32155 0 0 1 3 1 Cytosol 1 0.500231643921092 0.99540138244629 0.999536712157815 hm5C_site_32175 DeepMRMD:0.99540138244629;iRNA_m5C:0.999536712157815 32176 chr5 134130594 134130594 1 + G T SARC 134130605 + 134130585 134130625 41 ATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC ATGTTTTCATCTACTTTCCCCAGAGCTATGGAGGCTTTGGC < 41bp 1 0.364728380795317 1 0.353326201438904 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130605 chr5:134130594 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_32156 0 0 1 3 1 Cytosol 1 0.500231643921091 1 0.999536712157819 hm5C_site_32176 DeepMRMD:1;iRNA_m5C:0.999536712157819 32177 chr5 153709234 153709234 1 + G T SARC 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTGTTCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA < 41bp 1 0.597722030326761 1 0.933702945709229 experiment 0.804555939346479 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709234 synonymous SNV . 0 7 hm5C_associated_SNPs_32157 0 0 0 0 1 Ribosome 1 0.500226157705584 0.132594108581542 0.999547684588832 hm5C_site_32177 DeepMRMD:0.132594108581542;iRNA_m5C:0.999547684588832 32178 chr7 22896273 22896273 1 + G T SARC 22896268 + 22896248 22896288 41 CTCTAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAA CTCTAATCTGATTTTATGTGCTTCTTCTGTGATGGATTAAA < 41bp 1 0.0828969405546682 1 0.0416432023048401 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896268 chr7:22896273 . . 0 26 hm5C_associated_SNPs_32158 0 0 1 1 0 unknown 1 0.500230496901185 1 0.999539006197631 hm5C_site_32178 DeepMRMD:1;iRNA_m5C:0.999539006197631 32179 chr7 22896273 22896273 1 + G T SARC 22896271 + 22896251 22896291 41 TAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAAGGA TAATCTGATTTTATGTGCTTCTTCTGTGATGGATTAAAGGA < 41bp 1 0.164649103196407 1 0.0713326930999756 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896271 chr7:22896273 . . 0 23 hm5C_associated_SNPs_32159 0 0 1 1 0 unknown 1 0.500231643829096 1 0.999536712341809 hm5C_site_32179 DeepMRMD:1;iRNA_m5C:0.999536712341809 32180 chr7 148876536 148876536 1 + G T SARC 148876555 + 148876535 148876575 41 AGCACCTGCTGAACCACCGGCGGCTGCACACAGGCGAGCGG ATCACCTGCTGAACCACCGGCGGCTGCACACAGGCGAGCGG < 41bp 1 0.437575558402082 1 0.702564418315887 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148876555 chr7:148876536 nonsynonymous SNV 0.997 1 2 hm5C_associated_SNPs_32160 0 0 0 0 0 chromatin 1 0.500233299841388 0.594871163368226 0.999533400317224 hm5C_site_32180 DeepMRMD:0.594871163368226;iRNA_m5C:0.999533400317224 32181 chr8 90770311 90770311 1 + G T SARC 90770303 + 90770283 90770323 41 GGGACCATGAACGGGGAGGCCATCTGCAGCGCCCTGCCCAC GGGACCATGAACGGGGAGGCCATCTGCATCGCCCTGCCCAC < 41bp 1 0.664802570550078 1 0.179072201251984 experiment 0.670394858899844 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIPK2 ENSG00000104312 CDS Human protein_coding chr8:90770303 chr8:90770311 nonsynonymous SNV 0.715 1 29 hm5C_associated_SNPs_32161 0 0 1 0 0 chromatin 1 0.500231643921083 1 0.999536712157834 hm5C_site_32181 DeepMRMD:1;iRNA_m5C:0.999536712157834 32182 chr9 33917123 33917123 1 + G T SARC 33917126 + 33917106 33917146 41 GCCTTCCAATGACAACAGCTCAGATTTGCTTTACGACGACT GCCTTCCAATGACAACATCTCAGATTTGCTTTACGACGACT < 41bp 1 0.351265782112784 1 0.25821715593338 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917126 chr9:33917123 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_32162 0 0 1 0 0 Cytosol 1 0.500231921861623 1 0.999536156276755 hm5C_site_32182 DeepMRMD:1;iRNA_m5C:0.999536156276755 32183 chr9 33917123 33917123 1 + G T SARC 33917142 + 33917122 33917162 41 AGCTCAGATTTGCTTTACGACGACTTGTATGATGACGACAT ATCTCAGATTTGCTTTACGACGACTTGTATGATGACGACAT < 41bp 1 0.34493121709009 1 0.0427992641925812 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917142 chr9:33917123 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_32163 0 0 1 0 0 Cytosol 1 0.500231625230746 1 0.999536749538508 hm5C_site_32183 DeepMRMD:1;iRNA_m5C:0.999536749538508 32184 chr11 403985 403985 1 + G T SARC 403978 + 403958 403998 41 GCCACCTGATCGAGAAGCTGCCGGGCAGCGTGGGTGAGAAG GCCACCTGATCGAGAAGCTGCCGGGCATCGTGGGTGAGAAG < 41bp 1 0.264587624953241 1 0.360161423683167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKP3 ENSG00000184363 CDS Human protein_coding chr11:403978 chr11:403985 nonsynonymous SNV 0.482 2 28 hm5C_associated_SNPs_32164 0 0 1 0 1 Ribosome 1 0.500231499516919 1 0.999537000966161 hm5C_site_32184 DeepMRMD:1;iRNA_m5C:0.999537000966161 32185 chr11 403985 403985 1 + G T SARC 403979 + 403959 403999 41 CCACCTGATCGAGAAGCTGCCGGGCAGCGTGGGTGAGAAGT CCACCTGATCGAGAAGCTGCCGGGCATCGTGGGTGAGAAGT < 41bp 1 0.369446288072317 1 0.472202390432358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKP3 ENSG00000184363 CDS Human protein_coding chr11:403979 chr11:403985 nonsynonymous SNV 0.482 2 27 hm5C_associated_SNPs_32165 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32185 DeepMRMD:1;iRNA_m5C:0.999536712157815 32186 chr14 24784929 24784929 1 + G T SARC 24784923 + 24784903 24784943 41 TTCATCTCTCTGCTGGCTATCATCCTGCTGTCAGTGGCGCT TTCATCTCTCTGCTGGCTATCATCCTTCTGTCAGTGGCGCT < 41bp 1 0.135431473028936 1 0.784430503845215 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LTB4R ENSG00000213903 CDS Human protein_coding chr14:24784923 chr14:24784929 synonymous SNV . 0 27 hm5C_associated_SNPs_32166 0 0 1 0 1 Nucleus 1 0.500231643282059 0.43113899230957 0.999536713435882 hm5C_site_32186 DeepMRMD:0.43113899230957;iRNA_m5C:0.999536713435882 32187 chr14 74424925 74424925 1 + G T SARC 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGGCCGACTCCATCCCTTGGGTTCATATTAC < 41bp 1 0.142850962240246 1 0.0695010721683502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424925 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_32167 0 0 1 0 2 Ribosome 1 0.500231644169991 1 0.999536711660018 hm5C_site_32187 DeepMRMD:1;iRNA_m5C:0.999536711660018 32188 chr15 96875651 96875651 1 + G T SARC 96875664 + 96875644 96875684 41 AAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGC AAGCGCATCGTGCGGAGGAACCTGAGCTACACGTGCCGCGC < 41bp 1 0.542233734440837 1 0.449511826038361 experiment 0.915532531118326 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F2 ENSG00000185551 CDS Human protein_coding chr15:96875664 chr15:96875651 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_32168 0 0 1 0 0 Cytoplasm 1 0.500231643923281 1 0.999536712153438 hm5C_site_32188 DeepMRMD:1;iRNA_m5C:0.999536712153438 32189 chr16 630876 630876 1 + G T SARC 630864 + 630844 630884 41 CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCCGTGCAG CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCTCCGTGCAG < 41bp 1 0.290853327798436 1 0.334963291883469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:630864 chr16:630876 nonsynonymous SNV 0.392 0 33 hm5C_associated_SNPs_32169 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32189 DeepMRMD:1;iRNA_m5C:0.999536712157815 32190 chr19 9939308 9939308 1 + G T SARC 9939290 + 9939270 9939310 41 CGGATGATACCATCGGGGACCTTAAGAAGCTGATTGCAGCC CGGATGATACCATCGGGGACCTTAAGAAGCTGATTGCATCC < 41bp 1 0.429092446128445 1 0.0917793810367584 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBL5 ENSG00000198258 CDS Human protein_coding chr19:9939290 chr19:9939308 nonsynonymous SNV 0.995 4 39 hm5C_associated_SNPs_32171 0 0 1 0 2 Ribosome 1 0.500231798338248 1 0.999536403323503 hm5C_site_32190 DeepMRMD:1;iRNA_m5C:0.999536403323503 32191 chr19 36216702 36216702 1 + C T SARC 36216704 + 36216684 36216724 41 TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG TATCCAACCCGGGCCACGTGCAAACGGCGCCACTGGGTGAG < 41bp 1 0.162083935404745 1 0.200727790594101 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216704 chr19:36216702 nonsynonymous SNV 0.972 5 19 hm5C_associated_SNPs_32173 0 0 1 0 2 chromatin 1 0.500231643921089 1 0.999536712157822 hm5C_site_32191 DeepMRMD:1;iRNA_m5C:0.999536712157822 32192 chr19 49593595 49593595 1 + G T SARC 49593585 + 49593565 49593605 41 TCCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGA TCCTCCAACTCGTGCTGAAACCCGAGAGGATCGCATGGAGA < 41bp 1 0.67988219528404 1 0.330941259860992 experiment 0.640235609431921 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593585 chr19:49593595 nonsynonymous SNV 0.996 1 31 hm5C_associated_SNPs_32174 0 0 1 0 2 Nucleus 1 0.500231643921079 1 0.999536712157841 hm5C_site_32192 DeepMRMD:1;iRNA_m5C:0.999536712157841 32193 chr19 49593595 49593595 1 + G T SARC 49593586 + 49593566 49593606 41 CCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG CCTCCAACTCGTGCTGAAACCCGAGAGGATCGCATGGAGAG < 41bp 1 0.4608052718761 1 0.662714719772339 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593586 chr19:49593595 nonsynonymous SNV 0.996 1 30 hm5C_associated_SNPs_32175 0 0 1 0 2 Nucleus 1 0.500231643923341 0.674570560455322 0.999536712153319 hm5C_site_32193 DeepMRMD:0.674570560455322;iRNA_m5C:0.999536712153319 32194 chr19 49593595 49593595 1 + G T SARC 49593596 + 49593576 49593616 41 GTGCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGT GTGCTGAAACCCGAGAGGATCGCATGGAGAGGAAAGTATGT < 41bp 1 0.283466501977394 1 0.271042943000793 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593596 chr19:49593595 nonsynonymous SNV 0.996 1 20 hm5C_associated_SNPs_32176 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32194 DeepMRMD:1;iRNA_m5C:0.999536712157815 32195 chr19 49593595 49593595 1 + G T SARC 49593598 + 49593578 49593618 41 GCTGAAACCCGAGAGGAGCGCATGGAGAGGAAAGTATGTCA GCTGAAACCCGAGAGGATCGCATGGAGAGGAAAGTATGTCA < 41bp 1 0.614390934683434 1 0.227098256349564 experiment 0.771218130633132 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593598 chr19:49593595 nonsynonymous SNV 0.996 1 18 hm5C_associated_SNPs_32177 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_32195 DeepMRMD:1;iRNA_m5C:0.999536712157815 32196 chr21 47805870 47805870 1 + G T SARC 47805872 + 47805852 47805892 41 CTCCTCTCCATGCTCAAGGCCGACGTCAACCTGTCCCACAG CTCCTCTCCATGCTCAAGTCCGACGTCAACCTGTCCCACAG < 41bp 1 0.330625879732499 1 0.330525100231171 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47805872 chr21:47805870 nonsynonymous SNV 0.008 0 19 hm5C_associated_SNPs_32178 0 0 0 0 1 Exosome 1 0.500231451463501 1 0.999537097072998 hm5C_site_32196 DeepMRMD:1;iRNA_m5C:0.999537097072998 32197 chrX 48760292 48760292 1 + G T SARC 48760278 + 48760258 48760298 41 ACACCACAGCAGCTGGGCCCCTCTTCCAGCAGCGGCCGTAT ACACCACAGCAGCTGGGCCCCTCTTCCAGCAGCGTCCGTAT < 41bp 1 0.51418423644025 1 0.138787358999252 experiment 0.9716315271195 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48760278 chrX:48760292 synonymous SNV . 0 35 hm5C_associated_SNPs_32179 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32197 DeepMRMD:1;iRNA_m5C:0.999536712157815 32198 chr14 21542353 21542353 1 + A G SARC 21542358 + 21542338 21542378 41 TACAAGGCATCAACAAGGACCGGCCAACAGGTCGCCTCAGT TACAAGGCATCAACAGGGACCGGCCAACAGGTCGCCTCAGT < 41bp 1 0.193521368402991 1 0.646280288696289 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21542358 chr14:21542353 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_32180 0 0 1 0 0 Cytosol 1 0.500231643921229 0.707439422607422 0.999536712157542 hm5C_site_32198 DeepMRMD:0.707439422607422;iRNA_m5C:0.999536712157542 32199 chr20 58519635 58519635 1 + G T SARC 58519620 + 58519600 58519640 41 CAAAGGGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACC CAAAGGGGGGCAAAGCAAGGCCCCCCACTGCCCCTTGGACC < 41bp 1 0.13394427854991 1 0.123681873083115 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519620 chr20:58519635 nonsynonymous SNV 0.003 3 36 hm5C_associated_SNPs_32181 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32199 DeepMRMD:1;iRNA_m5C:0.999536712157815 32200 chr20 58519635 58519635 1 + G T SARC 58519621 + 58519601 58519641 41 AAAGGGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACCT AAAGGGGGGCAAAGCAAGGCCCCCCACTGCCCCTTGGACCT < 41bp 1 0.20407876176895 1 0.133024036884308 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519621 chr20:58519635 nonsynonymous SNV 0.003 3 35 hm5C_associated_SNPs_32182 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32200 DeepMRMD:1;iRNA_m5C:0.999536712157815 32201 chr20 58519635 58519635 1 + G T SARC 58519622 + 58519602 58519642 41 AAGGGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTC AAGGGGGGCAAAGCAAGGCCCCCCACTGCCCCTTGGACCTC < 41bp 1 0.646113015264207 1 0.2571662068367 experiment 0.707773969471586 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519622 chr20:58519635 nonsynonymous SNV 0.003 3 34 hm5C_associated_SNPs_32183 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32201 DeepMRMD:1;iRNA_m5C:0.999536712157815 32202 chr20 58519635 58519635 1 + G T SARC 58519623 + 58519603 58519643 41 AGGGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTCA AGGGGGGCAAAGCAAGGCCCCCCACTGCCCCTTGGACCTCA < 41bp 1 0.170984259045236 1 0.0929356813430786 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519623 chr20:58519635 nonsynonymous SNV 0.003 3 33 hm5C_associated_SNPs_32184 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32202 DeepMRMD:1;iRNA_m5C:0.999536712157815 32203 chr20 58519635 58519635 1 + G T SARC 58519624 + 58519604 58519644 41 GGGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTCAG GGGGGGCAAAGCAAGGCCCCCCACTGCCCCTTGGACCTCAG < 41bp 1 0.220062165173648 1 0.155778795480728 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519624 chr20:58519635 nonsynonymous SNV 0.003 3 32 hm5C_associated_SNPs_32185 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32203 DeepMRMD:1;iRNA_m5C:0.999536712157815 32204 chr20 58519635 58519635 1 + G T SARC 58519625 + 58519605 58519645 41 GGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTCAGG GGGGGCAAAGCAAGGCCCCCCACTGCCCCTTGGACCTCAGG < 41bp 1 0.314086277149367 1 0.161795139312744 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519625 chr20:58519635 nonsynonymous SNV 0.003 3 31 hm5C_associated_SNPs_32186 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32204 DeepMRMD:1;iRNA_m5C:0.999536712157815 32205 chr1 9305284 9305284 1 + G T SARC 9305294 + 9305274 9305314 41 ACTGTGCAGAGCACAAGGATCAGTTCCTGCAGCTGAGCCAG ACTGTGCAGATCACAAGGATCAGTTCCTGCAGCTGAGCCAG < 41bp 1 0.271916820822693 1 0.425351172685623 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control H6PD ENSG00000049239 CDS Human protein_coding chr1:9305294 chr1:9305284 nonsynonymous SNV 0.347 2 11 hm5C_associated_SNPs_32187 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_32205 DeepMRMD:1;iRNA_m5C:0.999536712157814 32206 chr1 11333750 11333750 1 + G T SARC 11333762 + 11333742 11333782 41 GCCCTGAGGCCCTGGAGCTTCAGTGCCTCACTCACACCGGT GCCCTGAGTCCCTGGAGCTTCAGTGCCTCACTCACACCGGT < 41bp 1 0.559102882772395 1 0.806934952735901 experiment 0.881794234455209 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBIAD1 ENSG00000120942 CDS Human protein_coding chr1:11333762 chr1:11333750 nonsynonymous SNV 0.998 5 9 hm5C_associated_SNPs_32188 0 0 1 0 0 Endoplasmic reticulum 1 0.500231641826891 0.386130094528198 0.999536716346217 hm5C_site_32206 DeepMRMD:0.386130094528198;iRNA_m5C:0.999536716346217 32207 chr1 20977162 20977162 1 + G T SARC 20977174 + 20977154 20977194 41 CCTCCTCTGCTCATGGAGGGCAGCCCTGTGATGTCCCTGCA CCTCCTCTTCTCATGGAGGGCAGCCCTGTGATGTCCCTGCA < 41bp 1 0.310009543697489 1 0.243273317813873 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PINK1 ENSG00000158828 CDS Human protein_coding chr1:20977174 chr1:20977162 nonsynonymous SNV 0.929 0 9 hm5C_associated_SNPs_32189 0 0 1 0 0 Ribosome 1 0.500227184354523 1 0.999545631290955 hm5C_site_32207 DeepMRMD:1;iRNA_m5C:0.999545631290955 32208 chr1 26772882 26772882 1 + G T SARC 26772901 + 26772881 26772921 41 AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC ATCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC < 41bp 1 0.39350738731757 1 0.664387941360474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772901 chr1:26772882 nonsynonymous SNV 0.997 0 2 hm5C_associated_SNPs_32190 0 0 1 0 2 chromatin 1 0.500231634480508 0.671224117279052 0.999536731038983 hm5C_site_32208 DeepMRMD:0.671224117279052;iRNA_m5C:0.999536731038983 32209 chr1 26772895 26772895 1 + G T SARC 26772901 + 26772881 26772921 41 AGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAAC AGCTGATTGCACAATCTGTACAGGCCACGAAGAACTACAAC < 41bp 1 0.395684413325019 1 0.347753524780273 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772901 chr1:26772895 nonsynonymous SNV 0.981 1 15 hm5C_associated_SNPs_32191 0 0 1 0 2 chromatin 1 0.500231643489566 1 0.999536713020868 hm5C_site_32209 DeepMRMD:1;iRNA_m5C:0.999536713020868 32210 chr1 26772895 26772895 1 + G T SARC 26772908 + 26772888 26772928 41 TGCACAAGCTGTACAGGCCACGAAGAACTACAACAAGTAAG TGCACAATCTGTACAGGCCACGAAGAACTACAACAAGTAAG < 41bp 1 0.261087714503888 1 0.440713435411453 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26772908 chr1:26772895 nonsynonymous SNV 0.981 1 8 hm5C_associated_SNPs_32192 0 0 1 0 2 chromatin 1 0.500472800720771 1 0.999054398558459 hm5C_site_32210 DeepMRMD:1;iRNA_m5C:0.999054398558459 32211 chr1 27088699 27088699 1 + G T SARC 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCATCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA < 41bp 1 0.223189961145833 1 0.0620279610157013 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088699 nonsynonymous SNV 0.995 3 6 hm5C_associated_SNPs_32193 0 0 1 0 1 Nucleus 1 0.500231490200978 1 0.999537019598043 hm5C_site_32211 DeepMRMD:1;iRNA_m5C:0.999537019598043 32212 chr1 43900108 43900108 1 + G T SARC 43900109 + 43900089 43900129 41 CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGAGGCGAGTT CTGAGTGTCGCCACCTGCATCAGCTCCTGGTGAGGCGAGTT < 41bp 1 0.146333454539548 1 0.487416982650757 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43900109 chr1:43900108 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32194 0 0 1 0 2 Cytosol 1 0.500231643921012 1 0.999536712157977 hm5C_site_32212 DeepMRMD:1;iRNA_m5C:0.999536712157977 32213 chr1 45267573 45267573 1 + G T SARC 45267571 + 45267551 45267591 41 GGTGGGGGATTTTGGGCTGGCAGCCCGGTTGGAGCCTCCGG GGTGGGGGATTTTGGGCTGGCATCCCGGTTGGAGCCTCCGG < 41bp 1 0.140492178337384 1 0.105129182338715 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267571 chr1:45267573 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_32195 0 0 1 0 2 Cytosol 1 0.500231643921135 1 0.999536712157729 hm5C_site_32213 DeepMRMD:1;iRNA_m5C:0.999536712157729 32214 chr1 64095682 64095682 1 + G T SARC 64095685 + 64095665 64095705 41 TGAAGAATATGCAGTTTGCCCTGACCTGAAAGTAGACCTTG TGAAGAATATGCAGTTTTCCCTGACCTGAAAGTAGACCTTG < 41bp 1 0.34485690712007 1 0.0229774713516235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PGM1 ENSG00000079739 CDS Human protein_coding chr1:64095685 chr1:64095682 nonsynonymous SNV 0.997 1 18 hm5C_associated_SNPs_32196 0 0 1 0 1 Ribosome 1 0.500231579417302 1 0.999536841165396 hm5C_site_32214 DeepMRMD:1;iRNA_m5C:0.999536841165396 32215 chr1 95639427 95639427 1 + G T SARC 95639425 + 95639405 95639445 41 CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG CGCCTGCTTGCAGAGCTTTCCATCCCGTTTGTGAATCAGCG < 41bp 1 0.0874067024583848 1 0.0798802673816681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95639425 chr1:95639427 nonsynonymous SNV 0.980 3 23 hm5C_associated_SNPs_32197 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_32215 DeepMRMD:1;iRNA_m5C:0.999536712157815 32216 chr1 107600255 107600255 1 + G T SARC 107600256 + 107600236 107600276 41 AGTCGGAGAAACCCCTGGTGCTGTCCACCTCGCCTTTTCAC AGTCGGAGAAACCCCTGGTTCTGTCCACCTCGCCTTTTCAC < 41bp 1 0.282239441123716 1 0.468830734491348 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT6 ENSG00000198890 CDS Human protein_coding chr1:107600256 chr1:107600255 synonymous SNV . 0 20 hm5C_associated_SNPs_32199 0 0 1 0 0 Ribosome 1 0.500231643925097 1 0.999536712149806 hm5C_site_32216 DeepMRMD:1;iRNA_m5C:0.999536712149806 32217 chr1 109801253 109801253 1 + G T SARC 109801267 + 109801247 109801287 41 CGTACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCA CGTACATCGGGACACCGACGCCCCCGGGGGCCACATCCTCA < 41bp 1 0.0581816484294881 1 0.0624599456787109 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801267 chr1:109801253 nonsynonymous SNV 0.134 3 7 hm5C_associated_SNPs_32200 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644033059 1 0.999536711933882 hm5C_site_32217 DeepMRMD:1;iRNA_m5C:0.999536711933882 32218 chr1 109801253 109801253 1 + G T SARC 109801268 + 109801248 109801288 41 GTACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCAA GTACATCGGGACACCGACGCCCCCGGGGGCCACATCCTCAA < 41bp 1 0.294080069966508 1 0.541178166866302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801268 chr1:109801253 nonsynonymous SNV 0.134 3 6 hm5C_associated_SNPs_32201 0 0 1 0 0 Endoplasmic reticulum 1 0.500231645401602 0.917643666267396 0.999536709196797 hm5C_site_32218 DeepMRMD:0.917643666267396;iRNA_m5C:0.999536709196797 32219 chr1 109801253 109801253 1 + G T SARC 109801269 + 109801249 109801289 41 TACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCAAC TACATCGGGACACCGACGCCCCCGGGGGCCACATCCTCAAC < 41bp 1 0.276323191825927 1 0.451753914356232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801269 chr1:109801253 nonsynonymous SNV 0.134 3 5 hm5C_associated_SNPs_32202 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644684176 1 0.999536710631648 hm5C_site_32219 DeepMRMD:1;iRNA_m5C:0.999536710631648 32220 chr1 109801253 109801253 1 + G T SARC 109801270 + 109801250 109801290 41 ACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCAACG ACATCGGGACACCGACGCCCCCGGGGGCCACATCCTCAACG < 41bp 1 0.434011410086911 1 0.510028004646301 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801270 chr1:109801253 nonsynonymous SNV 0.134 3 4 hm5C_associated_SNPs_32203 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643943542 0.979943990707398 0.999536712112916 hm5C_site_32220 DeepMRMD:0.979943990707398;iRNA_m5C:0.999536712112916 32221 chr1 110466515 110466515 1 + G T SARC 110466513 + 110466493 110466533 41 CCACCCTCTCTGCTCAGCCACAGCTTTCCAGAAGCCACTCC CCACCCTCTCTGCTCAGCCACATCTTTCCAGAAGCCACTCC < 41bp 1 0.149306754169651 1 0.0281227827072144 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466513 chr1:110466515 nonsynonymous SNV 0.019 0 23 hm5C_associated_SNPs_32205 0 0 0 0 0 chromatin 1 0.500231643882287 1 0.999536712235426 hm5C_site_32221 DeepMRMD:1;iRNA_m5C:0.999536712235426 32222 chr1 151260254 151260254 1 + G T SARC 151260267 + 151260247 151260287 41 CAGTCCAGCCTGGTGGAGGCCTTCAACAAGATCCTCAACAG CAGTCCATCCTGGTGGAGGCCTTCAACAAGATCCTCAACAG < 41bp 1 0.422488647142698 1 0.639838635921478 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151260267 chr1:151260254 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_32206 0 0 1 0 0 chromatin 1 0.500231656698653 0.720322728157044 0.999536686602695 hm5C_site_32222 DeepMRMD:0.720322728157044;iRNA_m5C:0.999536686602695 32223 chr1 154317164 154317164 1 + G T SARC 154317162 + 154317142 154317182 41 TCATCCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAA TCATCCCGCTCCGTAGGCAACGTCTTCACCTATCAGGACAA < 41bp 1 0.112415826211282 1 0.0400459766387939 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317162 chr1:154317164 nonsynonymous SNV 0.583 1 23 hm5C_associated_SNPs_32207 0 0 1 0 2 chromatin 1 0.500231643921099 1 0.999536712157802 hm5C_site_32223 DeepMRMD:1;iRNA_m5C:0.999536712157802 32224 chr1 154975338 154975338 1 + G T SARC 154975340 + 154975320 154975360 41 ACCGGAGCAGGGCCCCAAGCCCCCGGGCCTGGTGGGGGACG ACCGGAGCAGGGCCCCAATCCCCCGGGCCTGGTGGGGGACG < 41bp 1 0.410495606562348 1 0.562848925590515 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975340 chr1:154975338 . . 0 19 hm5C_associated_SNPs_32208 0 0 1 0 2 chromatin 1 0.500231643921093 0.87430214881897 0.999536712157815 hm5C_site_32224 DeepMRMD:0.87430214881897;iRNA_m5C:0.999536712157815 32225 chr1 154975338 154975338 1 + G T SARC 154975341 + 154975321 154975361 41 CCGGAGCAGGGCCCCAAGCCCCCGGGCCTGGTGGGGGACGC CCGGAGCAGGGCCCCAATCCCCCGGGCCTGGTGGGGGACGC < 41bp 1 0.6849651948021 1 0.812760293483734 experiment 0.630069610395801 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975341 chr1:154975338 . . 0 18 hm5C_associated_SNPs_32209 0 0 1 0 2 chromatin 1 0.500231643921092 0.374479413032532 0.999536712157815 hm5C_site_32225 DeepMRMD:0.374479413032532;iRNA_m5C:0.999536712157815 32226 chr1 154975338 154975338 1 + G T SARC 154975342 + 154975322 154975362 41 CGGAGCAGGGCCCCAAGCCCCCGGGCCTGGTGGGGGACGCG CGGAGCAGGGCCCCAATCCCCCGGGCCTGGTGGGGGACGCG < 41bp 1 0.677158042559946 1 0.760273814201355 experiment 0.645683914880108 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975342 chr1:154975338 . . 0 17 hm5C_associated_SNPs_32210 0 0 1 0 2 chromatin 1 0.500231643921133 0.47945237159729 0.999536712157735 hm5C_site_32226 DeepMRMD:0.47945237159729;iRNA_m5C:0.999536712157735 32227 chr1 154975338 154975338 1 + G T SARC 154975343 + 154975323 154975363 41 GGAGCAGGGCCCCAAGCCCCCGGGCCTGGTGGGGGACGCGC GGAGCAGGGCCCCAATCCCCCGGGCCTGGTGGGGGACGCGC < 41bp 1 0.677323236623865 1 0.731135249137878 experiment 0.64535352675227 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ZBTB7B ENSG00000160685 UTR5 Human protein_coding chr1:154975343 chr1:154975338 . . 0 16 hm5C_associated_SNPs_32211 0 0 1 0 2 chromatin 1 0.500231643921092 0.537729501724244 0.999536712157815 hm5C_site_32227 DeepMRMD:0.537729501724244;iRNA_m5C:0.999536712157815 32228 chr1 198231735 198231735 1 + G T SARC 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCACGTTCTGATTGCATCAAAGAAATAG < 41bp 1 0.228987366667017 1 0.119268089532852 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231735 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_32213 0 0 1 0 2 Nucleus 1 0.50023164662908 1 0.999536706741839 hm5C_site_32228 DeepMRMD:1;iRNA_m5C:0.999536706741839 32229 chr1 198231735 198231735 1 + G T SARC 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTTCTGATTGCATCAAAGAAATAGATCTTCTTAA < 41bp 1 0.299861514691959 1 0.744122684001923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231735 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_32214 0 0 1 0 2 Nucleus 1 0.500228253575235 0.511754631996154 0.99954349284953 hm5C_site_32229 DeepMRMD:0.511754631996154;iRNA_m5C:0.99954349284953 32230 chr2 10022869 10022869 1 + G T SARC 10022851 + 10022831 10022871 41 ACAGGTTTGTTGAAGAGGACCATATTCCTTACATAAATGCT ACAGGTTTGTTGAAGAGGACCATATTCCTTACATAAATTCT < 41bp 1 0.047234469809237 1 0.114045560359955 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAF1B ENSG00000115750 CDS Human protein_coding chr2:10022851 chr2:10022869 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_32215 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921087 1 0.999536712157825 hm5C_site_32230 DeepMRMD:1;iRNA_m5C:0.999536712157825 32231 chr2 46609711 46609711 1 + G T SARC 46609709 + 46609689 46609729 41 GCCACCCAGTACCAGGACTACAGCCTGTCGTCAGCCCACAA GCCACCCAGTACCAGGACTACATCCTGTCGTCAGCCCACAA < 41bp 1 0.127230475915152 1 0.0373284518718719 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46609709 chr2:46609711 nonsynonymous SNV 0.398 1 23 hm5C_associated_SNPs_32216 0 0 1 0 1 Cytosol 1 0.50023161969804 1 0.99953676060392 hm5C_site_32231 DeepMRMD:1;iRNA_m5C:0.99953676060392 32232 chr2 100009508 100009508 1 + G T SARC 100009522 + 100009502 100009542 41 ACATTGGCTGGTTTACCCCTCCTTGTGGCTTATAAAGAAGA ACATTGTCTGGTTTACCCCTCCTTGTGGCTTATAAAGAAGA < 41bp 1 0.0315765818992082 1 0.167004019021988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100009522 chr2:100009508 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_32217 0 0 1 0 2 Ribosome 1 0.500231593002039 1 0.999536813995922 hm5C_site_32232 DeepMRMD:1;iRNA_m5C:0.999536813995922 32233 chr2 219538634 219538634 1 + G T SARC 219538635 + 219538615 219538655 41 CAGACTATGCTGAGGGAGAGCTCTTTCAGATCCTAGAAGAT CAGACTATGCTGAGGGAGATCTCTTTCAGATCCTAGAAGAT < 41bp 1 0.144615868314083 1 0.203421920537949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STK36 ENSG00000163482 CDS Human protein_coding chr2:219538635 chr2:219538634 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32218 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_32233 DeepMRMD:1;iRNA_m5C:0.999536712157816 32234 chr2 241534002 241534002 1 + G T SARC 241533998 + 241533978 241534018 41 GGTAGATGCAGCGGTAGCATCTGAGCTCCTGTCCCAGCTCC GGTAGATGCAGCGGTAGCATCTGATCTCCTGTCCCAGCTCC < 41bp 1 0.592055602594857 1 0.51717609167099 experiment 0.815888794810287 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533998 chr2:241534002 nonsynonymous SNV 0.765 1 25 hm5C_associated_SNPs_32219 0 0 1 1 1 cytosol 1 0.500231643921539 0.96564781665802 0.999536712156921 hm5C_site_32234 DeepMRMD:0.96564781665802;iRNA_m5C:0.999536712156921 32235 chr3 47047875 47047875 1 + G T SARC 47047857 + 47047837 47047877 41 TCGGCTCTCAGCTGAGGAAGCAGCCCATCGCCTTGCACGCC TCGGCTCTCAGCTGAGGAAGCAGCCCATCGCCTTGCACTCC < 41bp 1 0.193546754266267 1 0.772260665893555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47047857 chr3:47047875 nonsynonymous SNV 0.892 4 39 hm5C_associated_SNPs_32221 0 0 0 0 2 Nucleus 1 0.500231644921844 0.45547866821289 0.999536710156312 hm5C_site_32235 DeepMRMD:0.45547866821289;iRNA_m5C:0.999536710156312 32236 chr3 47451531 47451531 1 + T C SARC 47451521 + 47451501 47451541 41 CAGGAGACCCCCCTGAGGAGCTGCGCAGCCTCCCCCCTGAC CAGGAGACCCCCCTGAGGAGCTGCGCAGCCCCCCCCCTGAC < 41bp 1 0.585971596100153 1 0.521194756031036 experiment 0.828056807799693 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47451521 chr3:47451531 nonsynonymous SNV 0.780 4 31 hm5C_associated_SNPs_32222 0 0 1 0 0 chromatin 1 0.500231643921092 0.957610487937928 0.999536712157815 hm5C_site_32236 DeepMRMD:0.957610487937928;iRNA_m5C:0.999536712157815 32237 chr3 193361880 193361880 1 + G T SARC 193361862 + 193361842 193361882 41 TCGTTTTGACCAAAGTAGACCTGGCAGAGAAAAATGTAGCC TCGTTTTGACCAAAGTAGACCTGGCAGAGAAAAATGTATCC < 41bp 1 0.387888042973295 1 0.213040500879288 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193361862 chr3:193361880 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_32223 0 0 1 0 0 Nucleus 1 0.500231681590247 1 0.999536636819506 hm5C_site_32237 DeepMRMD:1;iRNA_m5C:0.999536636819506 32238 chr4 3133409 3133409 1 + G T SARC 3133428 + 3133408 3133448 41 GGCCCTCAGCTGTGTGGGAGCAGCTGTGGCCCTCCACCCGG GTCCCTCAGCTGTGTGGGAGCAGCTGTGGCCCTCCACCCGG < 41bp 1 0.51561719591031 1 0.551638066768646 experiment 0.96876560817938 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3133428 chr4:3133409 nonsynonymous SNV 0.997 3 2 hm5C_associated_SNPs_32224 0 0 0 0 2 Cytosol 1 0.500231643921102 0.896723866462708 0.999536712157797 hm5C_site_32238 DeepMRMD:0.896723866462708;iRNA_m5C:0.999536712157797 32239 chr4 57180270 57180270 1 + G T SARC 57180277 + 57180257 57180297 41 AACGGACACCCAGGCGAGGACAAGCCAACGTGGCACGAAGA AACGGACACCCAGTCGAGGACAAGCCAACGTGGCACGAAGA < 41bp 1 0.304093017851179 1 0.429612517356873 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180277 chr4:57180270 nonsynonymous SNV 0.424 0 14 hm5C_associated_SNPs_32225 0 0 0 0 1 cytosol 1 0.500231643923831 1 0.999536712152338 hm5C_site_32239 DeepMRMD:1;iRNA_m5C:0.999536712152338 32240 chr4 87666202 87666202 1 + G T SARC 87666208 + 87666188 87666228 41 ATATGCCAGTACCTGCTGCACCTCTGCTCTTACCAGCATAA ATATGCCAGTACCTTCTGCACCTCTGCTCTTACCAGCATAA < 41bp 1 0.0396378770197513 1 0.0444177389144897 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87666208 chr4:87666202 synonymous SNV . 0 15 hm5C_associated_SNPs_32226 0 0 1 0 2 Ribosome 1 0.50026314939687 1 0.999473701206259 hm5C_site_32240 DeepMRMD:1;iRNA_m5C:0.999473701206259 32241 chr4 87666223 87666223 1 + G T SARC 87666208 + 87666188 87666228 41 ATATGCCAGTACCTGCTGCACCTCTGCTCTTACCAGCATAA ATATGCCAGTACCTGCTGCACCTCTGCTCTTACCATCATAA < 41bp 1 0.0358858130947454 1 0.0372444987297058 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87666208 chr4:87666223 nonsynonymous SNV 0.995 4 36 hm5C_associated_SNPs_32227 0 0 1 0 1 Ribosome 1 0.500233270168332 1 0.999533459663336 hm5C_site_32241 DeepMRMD:1;iRNA_m5C:0.999533459663336 32242 chr4 170616781 170616781 1 + G T SARC 170616800 + 170616780 170616820 41 AGCTGCAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG ATCTGCAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG < 41bp 1 0.134613999654022 1 0.046945333480835 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170616800 chr4:170616781 nonsynonymous SNV 0.999 5 2 hm5C_associated_SNPs_32228 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32242 DeepMRMD:1;iRNA_m5C:0.999536712157815 32243 chr5 1036463 1036463 1 + G T SARC 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCTCCGG < 41bp 1 0.179647372687666 1 0.0887462496757507 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036463 nonsynonymous SNV 0.955 4 37 hm5C_associated_SNPs_32229 0 0 0 0 2 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_32243 DeepMRMD:1;iRNA_m5C:0.999536712157815 32244 chr5 1036463 1036463 1 + G T SARC 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACACGGAGCGCAGAAACCACTACCTGGACCTCTCCGGG < 41bp 1 0.538134050185077 1 0.20293915271759 experiment 0.923731899629845 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036463 nonsynonymous SNV 0.955 4 36 hm5C_associated_SNPs_32230 0 0 0 0 2 exosome 1 0.50023165510111 1 0.999536689797779 hm5C_site_32244 DeepMRMD:1;iRNA_m5C:0.999536689797779 32245 chr5 169018122 169018122 1 + G T SARC 169018123 + 169018103 169018143 41 CGAATGTTAGAAAGTTTGAGCTGCGAATGTGAAGCTATTAA CGAATGTTAGAAAGTTTGATCTGCGAATGTGAAGCTATTAA < 41bp 1 0.510096841313788 1 0.140852361917496 experiment 0.979806317372425 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169018123 chr5:169018122 nonsynonymous SNV 0.911 2 20 hm5C_associated_SNPs_32231 0 0 1 0 1 chromatin 1 0.500233232126163 1 0.999533535747674 hm5C_site_32245 DeepMRMD:1;iRNA_m5C:0.999533535747674 32246 chr6 21000521 21000521 1 + G T SARC 21000514 + 21000494 21000534 41 GCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGT GCTTTTCTGCACATACCAGTCCAGTCTTCCTCCGACAGCGT < 41bp 1 0.195365177599816 1 0.0408836901187897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21000514 chr6:21000521 nonsynonymous SNV 0.990 3 28 hm5C_associated_SNPs_32232 0 0 1 0 2 Nucleus 1 0.500231833737902 1 0.999536332524196 hm5C_site_32246 DeepMRMD:1;iRNA_m5C:0.999536332524196 32247 chr6 32945661 32945661 1 + G T SARC 32945671 + 32945651 32945691 41 GAGGAAAGTAGCAGTGAGAGCTCCTCTGAGGAAGAGGAGGA GAGGAAAGTATCAGTGAGAGCTCCTCTGAGGAAGAGGAGGA < 41bp 1 0.43919546688632 1 0.368595510721207 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32945671 chr6:32945661 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_32233 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32247 DeepMRMD:1;iRNA_m5C:0.999536712157815 32248 chr6 43110019 43110019 1 + G T SARC 43110021 + 43110001 43110041 41 AACATCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT AACATCAAGCACACGGAGTCCCCCCTCTATGTCGTGGGTAT < 41bp 1 0.0758689357380373 1 0.0590914785861969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK7 ENSG00000112655 CDS Human protein_coding chr6:43110021 chr6:43110019 nonsynonymous SNV 0.999 2 19 hm5C_associated_SNPs_32234 0 0 1 0 1 Endoplasmic reticulum 1 0.500231568805519 1 0.999536862388962 hm5C_site_32248 DeepMRMD:1;iRNA_m5C:0.999536862388962 32249 chr6 47576988 47576988 1 + G T SARC 47576982 + 47576962 47577002 41 AAAAAAATTCCCTGGATGAACTTAGAGCCCAGATTATTGAA AAAAAAATTCCCTGGATGAACTTAGATCCCAGATTATTGAA < 41bp 1 0.257363215607572 1 0.0611496567726135 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47576982 chr6:47576988 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_32235 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32249 DeepMRMD:1;iRNA_m5C:0.999536712157815 32250 chr6 64394836 64394836 1 + G T SARC 64394837 + 64394817 64394857 41 GTTGGGTTATTGTGAAGATGCGGAGTCTAATAGGCAGTTGG GTTGGGTTATTGTGAAGATTCGGAGTCTAATAGGCAGTTGG < 41bp 1 0.598441096938737 1 0.772605717182159 experiment 0.803117806122525 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHF3 ENSG00000118482 CDS Human protein_coding chr6:64394837 chr6:64394836 nonsynonymous SNV 0.294 0 20 hm5C_associated_SNPs_32236 0 0 1 0 0 Cytosol 1 0.500231643921092 0.454788565635682 0.999536712157815 hm5C_site_32250 DeepMRMD:0.454788565635682;iRNA_m5C:0.999536712157815 32251 chr6 116754622 116754622 1 + G T SARC 116754623 + 116754603 116754643 41 TGGCAGTGGTAACTGGCTAGCTGACCAAATCAGAAGGAACC TGGCAGTGGTAACTGGCTATCTGACCAAATCAGAAGGAACC < 41bp 1 0.233595282131369 1 0.439911961555481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSE ENSG00000111817 CDS Human protein_coding chr6:116754623 chr6:116754622 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_32237 0 0 0 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32251 DeepMRMD:1;iRNA_m5C:0.999536712157815 32252 chr6 158497760 158497760 1 + G T SARC 158497757 + 158497737 158497777 41 CAAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTG CAAGCGACAAATGCCGCACCCCCTCCTGGACAGACAGGGTG < 41bp 1 0.0426680103416702 1 0.0660877823829651 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497757 chr6:158497760 nonsynonymous SNV 0.823 4 24 hm5C_associated_SNPs_32238 0 0 1 0 1 Cytosol 1 0.500231643928238 1 0.999536712143524 hm5C_site_32252 DeepMRMD:1;iRNA_m5C:0.999536712143524 32253 chr6 158497760 158497760 1 + G T SARC 158497758 + 158497738 158497778 41 AAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTGC AAGCGACAAATGCCGCACCCCCTCCTGGACAGACAGGGTGC < 41bp 1 0.0399387249094323 1 0.109879404306412 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497758 chr6:158497760 nonsynonymous SNV 0.823 4 23 hm5C_associated_SNPs_32239 0 0 1 0 1 Cytosol 1 0.500231577300248 1 0.999536845399503 hm5C_site_32253 DeepMRMD:1;iRNA_m5C:0.999536845399503 32254 chr6 159181731 159181731 1 + G T SARC 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAATCTGGT < 41bp 1 0.566294096774273 1 0.247706860303879 experiment 0.867411806451455 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181731 nonsynonymous SNV 0.038 2 36 hm5C_associated_SNPs_32240 0 0 0 0 2 exosome 1 0.500231643921135 1 0.999536712157731 hm5C_site_32254 DeepMRMD:1;iRNA_m5C:0.999536712157731 32255 chr7 30640793 30640793 1 + G T SARC 30640781 + 30640761 30640801 41 GAGGAACAGATCCTGGAGATCGATTGCACCATGCTCACCCC GAGGAACAGATCCTGGAGATCGATTGCACCATTCTCACCCC < 41bp 1 0.514891376059734 1 0.442584365606308 experiment 0.970217247880532 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GARS ENSG00000106105 CDS Human protein_coding chr7:30640781 chr7:30640793 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_32241 0 0 1 0 1 Cytosol 1 0.500231643920331 1 0.999536712159338 hm5C_site_32255 DeepMRMD:1;iRNA_m5C:0.999536712159338 32256 chr7 129102865 129102865 1 + G T SARC 129102845 + 129102825 129102865 41 GAGACGCCATGTGAAATCCTCTACCAGGGAATGCTGTACAG GAGACGCCATGTGAAATCCTCTACCAGGGAATGCTGTACAT < 41bp 1 0.32337080076139 1 0.231141626834869 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129102845 chr7:129102865 nonsynonymous SNV 0.996 2 41 hm5C_associated_SNPs_32242 0 0 1 0 2 Nucleus 1 0.500231644021242 1 0.999536711957515 hm5C_site_32256 DeepMRMD:1;iRNA_m5C:0.999536711957515 32257 chr8 22054871 22054871 1 + G T SARC 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCTCG < 41bp 1 0.14831527641047 1 0.168311834335327 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054871 nonsynonymous SNV 0.996 3 39 hm5C_associated_SNPs_32243 0 0 1 0 1 Endoplasmic reticulum 1 0.500231646388289 1 0.999536707223422 hm5C_site_32257 DeepMRMD:1;iRNA_m5C:0.999536707223422 32258 chr9 20951089 20951089 1 + G T SARC 20951095 + 20951075 20951115 41 CTCAAGTCAAAGTAGAGCCTCTGGTAAGATTAAAGTCATAA CTCAAGTCAAAGTATAGCCTCTGGTAAGATTAAAGTCATAA < 41bp 1 0.160072665615838 1 0.102571159601212 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20951095 chr9:20951089 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_32244 0 0 0 0 2 Ribosome 1 0.500237171936244 1 0.999525656127511 hm5C_site_32258 DeepMRMD:1;iRNA_m5C:0.999525656127511 32259 chr9 72003130 72003130 1 + G T SARC 72003140 + 72003120 72003160 41 ACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTGAGAT ACTGGATCTGTCTGCAGTGACTCTGAGGAGAGGCTTGAGAT < 41bp 1 0.549470173187797 1 0.286175906658173 experiment 0.901059653624406 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:72003140 chr9:72003130 nonsynonymous SNV 0.992 1 11 hm5C_associated_SNPs_32245 0 0 0 0 1 cytosol 1 0.500231581372337 1 0.999536837255326 hm5C_site_32259 DeepMRMD:1;iRNA_m5C:0.999536837255326 32260 chr9 96427994 96427994 1 + G T SARC 96427976 + 96427956 96427996 41 CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCGACGAGCC CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCGACGATCC < 41bp 1 0.150847360246623 1 0.0620793402194977 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96427976 chr9:96427994 nonsynonymous SNV 0.373 4 39 hm5C_associated_SNPs_32246 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_32260 DeepMRMD:1;iRNA_m5C:0.999536712157816 32261 chr9 100425261 100425261 1 + G T SARC 100425251 + 100425231 100425271 41 AAAAGGTTTCATGAAGTCTTCAAAACCCTAGCTGAAAGTGA AAAAGGTTTCATGAAGTCTTCAAAACCCTATCTGAAAGTGA < 41bp 1 0.233498005095878 1 0.428771585226059 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100425251 chr9:100425261 nonsynonymous SNV 0.993 1 31 hm5C_associated_SNPs_32247 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_32261 DeepMRMD:1;iRNA_m5C:0.999536712157814 32262 chr9 131830105 131830105 1 + G T SARC 131830119 + 131830099 131830139 41 CCTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG CCTGCGTCCCGAGACCTGGGCCACAACACGGCTGGAGCTGG < 41bp 1 0.178025605116727 1 0.0677765309810638 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830119 chr9:131830105 synonymous SNV . 0 7 hm5C_associated_SNPs_32248 0 0 1 0 2 unknown 1 0.500231643921691 1 0.999536712156619 hm5C_site_32262 DeepMRMD:1;iRNA_m5C:0.999536712156619 32263 chr9 131830105 131830105 1 + G T SARC 131830120 + 131830100 131830140 41 CTGCGGCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA CTGCGTCCCGAGACCTGGGCCACAACACGGCTGGAGCTGGA < 41bp 1 0.379946760289327 1 0.227197021245956 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131830120 chr9:131830105 synonymous SNV . 0 6 hm5C_associated_SNPs_32249 0 0 1 0 2 unknown 1 0.500231674148771 1 0.999536651702457 hm5C_site_32263 DeepMRMD:1;iRNA_m5C:0.999536651702457 32264 chr9 134322024 134322024 1 + G T SARC 134322022 + 134322002 134322042 41 TACATACCATGACATGCTTCCTGCTTTTGTAAGTCTTCAGA TACATACCATGACATGCTTCCTTCTTTTGTAAGTCTTCAGA < 41bp 1 0.0357070858839287 1 0.0596597790718079 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134322022 chr9:134322024 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_32250 0 0 1 0 1 Nucleus 1 0.50023164500041 1 0.999536709999181 hm5C_site_32264 DeepMRMD:1;iRNA_m5C:0.999536709999181 32265 chr9 135926300 135926300 1 + G T SARC 135926282 + 135926262 135926302 41 AGGATGAGGAGGTGCCCAAGCAGCCACTGGAGGCTGCAGCC AGGATGAGGAGGTGCCCAAGCAGCCACTGGAGGCTGCATCC < 41bp 1 0.680427748298324 1 0.486481696367264 experiment 0.639144503403351 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135926282 chr9:135926300 nonsynonymous SNV 0.989 0 39 hm5C_associated_SNPs_32251 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32265 DeepMRMD:1;iRNA_m5C:0.999536712157815 32266 chr9 135926300 135926300 1 + G T SARC 135926303 + 135926283 135926323 41 AGCCACTGGAGGCTGCAGCCCAGACGTGGAGGAGAGTCTGC AGCCACTGGAGGCTGCATCCCAGACGTGGAGGAGAGTCTGC < 41bp 1 0.59433819079385 1 0.433247298002243 experiment 0.8113236184123 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135926303 chr9:135926300 nonsynonymous SNV 0.989 0 18 hm5C_associated_SNPs_32253 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32266 DeepMRMD:1;iRNA_m5C:0.999536712157815 32267 chr10 51584777 51584777 1 + G T SARC 51584778 + 51584758 51584798 41 AAAAGGTTGGAGATCAAGAGCTTCCTGATCAAGATGAGATG AAAAGGTTGGAGATCAAGATCTTCCTGATCAAGATGAGATG < 41bp 1 0.138215242691104 1 0.0619297623634338 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCOA4 ENSG00000138293 CDS Human other chr10:51584778 chr10:51584777 nonsynonymous SNV . 0 20 hm5C_associated_SNPs_32255 0 0 1 0 0 Cytosol 1 0.500231642597847 1 0.999536714804306 hm5C_site_32267 DeepMRMD:1;iRNA_m5C:0.999536714804306 32268 chr10 73992844 73992844 1 + G T SARC 73992860 + 73992840 73992880 41 AGCAGCTGCTGGGATTCACCCCCTCTTCAGGTTGATACTGC AGCATCTGCTGGGATTCACCCCCTCTTCAGGTTGATACTGC < 41bp 1 0.159533095612423 1 0.123084545135498 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73992860 chr10:73992844 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_32256 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32268 DeepMRMD:1;iRNA_m5C:0.999536712157815 32269 chr10 105172947 105172947 1 + G T SARC 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTCCTACATCCTGGACGCCCACTCACCCGACTCTCTTGCC < 41bp 1 0.0994262386471392 1 0.0869990289211273 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172947 nonsynonymous SNV 0.773 0 10 hm5C_associated_SNPs_32257 0 0 1 0 1 Nucleus 1 0.500231644360737 1 0.999536711278526 hm5C_site_32269 DeepMRMD:1;iRNA_m5C:0.999536711278526 32270 chr10 123845421 123845421 1 + G T SARC 123845420 + 123845400 123845440 41 GCTGCTGAGACTGGTGGCAGCGCTGGTGCAGGAGACCCAGG GCTGCTGAGACTGGTGGCAGCTCTGGTGCAGGAGACCCAGG < 41bp 1 0.327069579053657 1 0.803613662719727 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TACC2 ENSG00000138162 CDS Human protein_coding chr10:123845420 chr10:123845421 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_32258 0 0 0 0 0 Cytoplasm 1 0.500230614044433 0.392772674560546 0.999538771911133 hm5C_site_32270 DeepMRMD:0.392772674560546;iRNA_m5C:0.999538771911133 32271 chr10 126505161 126505161 1 + G T SARC 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACCATCATCCTTGTTCAAAACTTTTT < 41bp 1 0.0889759440942272 1 0.0500324070453644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505161 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_32259 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32271 DeepMRMD:1;iRNA_m5C:0.999536712157815 32272 chr11 34129827 34129827 1 + G T SARC 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTATCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.169011768533011 1 0.146189719438553 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129827 nonsynonymous SNV 0.928 0 5 hm5C_associated_SNPs_32260 0 0 1 0 2 chromatin 1 0.500231643929698 1 0.999536712140604 hm5C_site_32272 DeepMRMD:1;iRNA_m5C:0.999536712140604 32273 chr11 61111363 61111363 1 + G T SARC 61111346 + 61111326 61111366 41 AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGGCTG AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGTCTG < 41bp 1 0.218004019466202 1 0.303277313709259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61111346 chr11:61111363 nonsynonymous SNV 0.151 0 38 hm5C_associated_SNPs_32261 0 0 1 0 2 Cytosol 1 0.50023163130511 1 0.999536737389779 hm5C_site_32273 DeepMRMD:1;iRNA_m5C:0.999536737389779 32274 chr11 61897289 61897289 1 + G T SARC 61897299 + 61897279 61897319 41 AGCCAGCTGAGCTCCCGACGCCTCCGCAGCAAGGACAGTGT AGCCAGCTGATCTCCCGACGCCTCCGCAGCAAGGACAGTGT < 41bp 1 0.0451564245244923 1 0.178869098424911 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897299 chr11:61897289 nonsynonymous SNV 0.771 0 11 hm5C_associated_SNPs_32262 0 0 1 0 1 chromatin 1 0.500231643921821 1 0.999536712156359 hm5C_site_32274 DeepMRMD:1;iRNA_m5C:0.999536712156359 32275 chr11 67047153 67047153 1 + G T SARC 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGGTTCCTCCGGATCTCTTCCAGGTGTGTGCCTCC < 41bp 1 0.161935335206759 1 0.223228365182877 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047153 synonymous SNV . 0 11 hm5C_associated_SNPs_32264 0 0 1 0 2 chromatin 1 0.500231643921108 1 0.999536712157784 hm5C_site_32275 DeepMRMD:1;iRNA_m5C:0.999536712157784 32276 chr11 67052433 67052433 1 + G T SARC 67052439 + 67052419 67052459 41 AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG AACCGCCTCGAGTGTCGGGGCGAGGGCGAGGCCCCGGTAAG < 41bp 1 0.676143032012829 1 0.924732804298401 experiment 0.647713935974343 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052439 chr11:67052433 nonsynonymous SNV 0.984 4 15 hm5C_associated_SNPs_32265 0 0 1 0 1 chromatin 1 0.500231643921092 0.150534391403198 0.999536712157815 hm5C_site_32276 DeepMRMD:0.150534391403198;iRNA_m5C:0.999536712157815 32277 chr11 67052433 67052433 1 + G T SARC 67052450 + 67052430 67052470 41 GTGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG GTGTCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG < 41bp 1 0.479092669168646 1 0.676627993583679 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052450 chr11:67052433 nonsynonymous SNV 0.984 4 4 hm5C_associated_SNPs_32266 0 0 1 0 1 chromatin 1 0.50023164381803 0.646744012832642 0.99953671236394 hm5C_site_32277 DeepMRMD:0.646744012832642;iRNA_m5C:0.99953671236394 32278 chr11 67052433 67052433 1 + G T SARC 67052452 + 67052432 67052472 41 GGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG GTCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG < 41bp 1 0.491920709975028 1 0.707907617092133 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052452 chr11:67052433 nonsynonymous SNV 0.984 4 2 hm5C_associated_SNPs_32268 0 0 1 0 1 chromatin 1 0.500231643887058 0.584184765815734 0.999536712225885 hm5C_site_32278 DeepMRMD:0.584184765815734;iRNA_m5C:0.999536712225885 32279 chr11 70275269 70275269 1 + G T SARC 70275262 + 70275242 70275282 41 GGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG GGAGAGAGCCCAGCGGATGGCCAAGGATCGGCAGGAGCAGG < 41bp 1 0.424277428339373 1 0.323982119560242 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275262 chr11:70275269 nonsynonymous SNV 0.986 0 28 hm5C_associated_SNPs_32270 0 0 1 0 1 Ribosome 1 0.500231643921113 1 0.999536712157774 hm5C_site_32279 DeepMRMD:1;iRNA_m5C:0.999536712157774 32280 chr11 74329691 74329691 1 + G T SARC 74329711 + 74329691 74329731 41 GCCAACAATGAGCTGACCACCAATGGTCATGGCCCACCTGC TCCAACAATGAGCTGACCACCAATGGTCATGGCCCACCTGC < 41bp 1 0.628021142049286 1 0.389350652694702 experiment 0.743957715901429 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329711 chr11:74329691 nonsynonymous SNV 0.816 0 1 hm5C_associated_SNPs_32271 0 0 1 0 0 Nucleus 1 0.500231643921535 1 0.999536712156929 hm5C_site_32280 DeepMRMD:1;iRNA_m5C:0.999536712156929 32281 chr11 130003567 130003567 1 + G T SARC 130003563 + 130003543 130003583 41 TGATTGAAGAAAGGAGGAACCAAAGCCTCTCTCTGCTCTAC TGATTGAAGAAAGGAGGAACCAAATCCTCTCTCTGCTCTAC < 41bp 1 0.291257420357697 1 0.411921560764313 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003563 chr11:130003567 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_32272 0 0 1 0 2 Endoplasmic reticulum 1 0.500231646848439 1 0.999536706303122 hm5C_site_32281 DeepMRMD:1;iRNA_m5C:0.999536706303122 32282 chr11 130003567 130003567 1 + G T SARC 130003575 + 130003555 130003595 41 GGAGGAACCAAAGCCTCTCTCTGCTCTACAAAGTACCTTAT GGAGGAACCAAATCCTCTCTCTGCTCTACAAAGTACCTTAT < 41bp 1 0.430258540428316 1 0.632368803024292 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003575 chr11:130003567 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_32273 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643918651 0.735262393951416 0.999536712162699 hm5C_site_32282 DeepMRMD:0.735262393951416;iRNA_m5C:0.999536712162699 32283 chr12 6344439 6344439 1 + G T SARC 6344427 + 6344407 6344447 41 GTCCAGGAGTTTTACAAGGACACCTACAACAAGCTGAAAAC GTCCAGGAGTTTTACAAGGACACCTACAACAATCTGAAAAC < 41bp 1 0.439189957809845 1 0.249540030956268 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD9 ENSG00000010278 CDS Human protein_coding chr12:6344427 chr12:6344439 nonsynonymous SNV 0.765 1 33 hm5C_associated_SNPs_32274 0 0 1 0 2 Ribosome 1 0.500231627644843 1 0.999536744710315 hm5C_site_32283 DeepMRMD:1;iRNA_m5C:0.999536744710315 32284 chr12 7027294 7027294 1 + G T SARC 7027310 + 7027290 7027330 41 GGTGGCTTTGCCCCCAATATCCTGGAGAACAGTGAAGGTGA GGTGTCTTTGCCCCCAATATCCTGGAGAACAGTGAAGGTGA < 41bp 1 0.45456788750393 1 0.561674535274506 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENO2 ENSG00000111674 CDS Human protein_coding chr12:7027310 chr12:7027294 nonsynonymous SNV 0.997 3 5 hm5C_associated_SNPs_32275 0 0 1 0 1 Cytosol 1 0.500231642149432 0.876650929450988 0.999536715701136 hm5C_site_32284 DeepMRMD:0.876650929450988;iRNA_m5C:0.999536715701136 32285 chr12 53343226 53343226 1 + G T SARC 53343242 - 53343222 53343262 41 TCCAGGCTCCTCACTCTGTCCAGGTAAGAGGCCAGGCGGTC TCCAGGCTCCTCACTCTGTCCAGGTAAGAGGCCAGGAGGTC < 41bp 1 0.619704667917036 1 0.810801386833191 experiment 0.760590664165927 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53343242 chr12:53343226 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_32277 0 0 1 0 0 Cytosol 1 0.500230540225897 0.378397226333618 0.999538919548206 hm5C_site_32285 DeepMRMD:0.378397226333618;iRNA_m5C:0.999538919548206 32286 chr12 53343226 53343226 1 + G T SARC 53343243 - 53343223 53343263 41 CTCCAGGCTCCTCACTCTGTCCAGGTAAGAGGCCAGGCGGT CTCCAGGCTCCTCACTCTGTCCAGGTAAGAGGCCAGGAGGT < 41bp 1 0.478013961725789 1 0.778818190097809 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53343243 chr12:53343226 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_32278 0 0 1 0 0 Cytosol 1 0.500231643921124 0.442363619804382 0.999536712157753 hm5C_site_32286 DeepMRMD:0.442363619804382;iRNA_m5C:0.999536712157753 32287 chr12 53433481 53433481 1 + G T SARC 53433478 + 53433458 53433498 41 CAAAGAAACCTGAGGAAAATCCAGCTTCCGTAAGTGTTGAA CAAAGAAACCTGAGGAAAATCCATCTTCCGTAAGTGTTGAA < 41bp 1 0.0814255886006697 1 0.0894257724285126 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433478 chr12:53433481 nonsynonymous SNV 0.948 1 24 hm5C_associated_SNPs_32279 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32287 DeepMRMD:1;iRNA_m5C:0.999536712157815 32288 chr12 93968582 93968582 1 + G T SARC 93968564 + 93968544 93968584 41 AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATATCT < 41bp 1 0.066870898932359 1 0.0536777079105377 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93968564 chr12:93968582 nonsynonymous SNV 0.996 5 39 hm5C_associated_SNPs_32280 0 0 1 2 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32288 DeepMRMD:1;iRNA_m5C:0.999536712157815 32289 chr12 104340683 104340683 1 + G T SARC 104340684 + 104340664 104340704 41 GAGATAGAATAGAAAGAATGCTTCGCCTCAGTTTGAACATT GAGATAGAATAGAAAGAATTCTTCGCCTCAGTTTGAACATT < 41bp 1 0.234207341947585 1 0.0898725092411041 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340684 chr12:104340683 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32281 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32289 DeepMRMD:1;iRNA_m5C:0.999536712157815 32290 chr12 104340683 104340683 1 + G T SARC 104340690 + 104340670 104340710 41 GAATAGAAAGAATGCTTCGCCTCAGTTTGAACATTGACCCT GAATAGAAAGAATTCTTCGCCTCAGTTTGAACATTGACCCT < 41bp 1 0.493310331241787 1 0.133467078208923 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340690 chr12:104340683 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_32282 0 0 1 0 1 Nucleus 1 0.500231643921036 1 0.999536712157927 hm5C_site_32290 DeepMRMD:1;iRNA_m5C:0.999536712157927 32291 chr12 104340683 104340683 1 + G T SARC 104340692 + 104340672 104340712 41 ATAGAAAGAATGCTTCGCCTCAGTTTGAACATTGACCCTGA ATAGAAAGAATTCTTCGCCTCAGTTTGAACATTGACCCTGA < 41bp 1 0.277006624032491 1 0.251530766487122 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340692 chr12:104340683 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_32283 0 0 1 0 1 Nucleus 1 0.500231644858874 1 0.999536710282252 hm5C_site_32291 DeepMRMD:1;iRNA_m5C:0.999536710282252 32292 chr12 104340683 104340683 1 + G T SARC 104340701 + 104340681 104340721 41 ATGCTTCGCCTCAGTTTGAACATTGACCCTGATGCAAAGGT ATTCTTCGCCTCAGTTTGAACATTGACCCTGATGCAAAGGT < 41bp 1 0.111642151332323 1 0.169773191213608 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104340701 chr12:104340683 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_32284 0 0 1 0 1 Nucleus 1 0.500231778489017 1 0.999536443021967 hm5C_site_32292 DeepMRMD:1;iRNA_m5C:0.999536443021967 32293 chr12 125603235 125603235 1 + G T SARC 125603220 + 125603200 125603240 41 TGTGGAACTGGATGGTGTCCCTTCTGGCCACAGGAGCGGCC TGTGGAACTGGATGGTGTCCCTTCTGGCCACAGGATCGGCC < 41bp 1 0.293313991140903 1 0.0455112755298615 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125603220 chr12:125603235 nonsynonymous SNV 0.006 1 36 hm5C_associated_SNPs_32285 0 0 1 1 1 Ribosome 1 0.500231643922698 1 0.999536712154604 hm5C_site_32293 DeepMRMD:1;iRNA_m5C:0.999536712154604 32294 chr12 132334398 132334398 1 + G T SARC 132334394 + 132334374 132334414 41 ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCGACTTC ATAACGTAGAGGAAGGATACCCGCTCCCCGTCTCCGACTTC < 41bp 1 0.133528138527841 1 0.0569112300872803 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334394 chr12:132334398 nonsynonymous SNV 0.935 3 25 hm5C_associated_SNPs_32286 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32294 DeepMRMD:1;iRNA_m5C:0.999536712157815 32295 chr14 58669631 58669631 1 + G T SARC 58669641 + 58669621 58669661 41 GATAAAAAGAGCTGGGATGCCTAAGGTATTTAAAAAAAAAT GATAAAAAGATCTGGGATGCCTAAGGTATTTAAAAAAAAAT < 41bp 1 0.376259971540845 1 0.50484424829483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58669641 chr14:58669631 nonsynonymous SNV 0.992 2 11 hm5C_associated_SNPs_32287 0 0 1 0 2 Ribosome 1 0.500231643921087 0.99031150341034 0.999536712157826 hm5C_site_32295 DeepMRMD:0.99031150341034;iRNA_m5C:0.999536712157826 32296 chr14 64628970 64628970 1 + G T SARC 64628971 + 64628951 64628991 41 ACAACCTGGCAGAGATCCTGCCCCCAGCCCTGCAGGACATA ACAACCTGGCAGAGATCCTTCCCCCAGCCCTGCAGGACATA < 41bp 1 0.0949674862316667 1 0.078144758939743 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64628971 chr14:64628970 synonymous SNV . 0 20 hm5C_associated_SNPs_32288 0 0 1 0 1 Nucleus 1 0.500231643921142 1 0.999536712157717 hm5C_site_32296 DeepMRMD:1;iRNA_m5C:0.999536712157717 32297 chr14 64990076 64990076 1 + G T SARC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGATCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC < 41bp 1 0.596603630214285 1 0.560886204242706 experiment 0.806792739571429 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990076 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_32289 0 0 1 0 1 Cytosol 1 0.500270825372822 0.878227591514588 0.999458349254356 hm5C_site_32297 DeepMRMD:0.878227591514588;iRNA_m5C:0.999458349254356 32298 chr14 72128092 72128092 1 + G T SARC 72128103 + 72128083 72128123 41 TGGAGCACAGCCATTCAGCCCAAAAAACATCCGATCCCACT TGGAGCACATCCATTCAGCCCAAAAAACATCCGATCCCACT < 41bp 1 0.278281661559039 1 0.414398789405823 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72128103 chr14:72128092 nonsynonymous SNV 0.987 2 10 hm5C_associated_SNPs_32290 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32298 DeepMRMD:1;iRNA_m5C:0.999536712157815 32299 chr14 75936046 75936046 1 + G T SARC 75936062 + 75936042 75936082 41 AGGAGCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTG AGGATCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTG < 41bp 1 0.60548594572231 1 0.46962958574295 experiment 0.78902810855538 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936062 chr14:75936046 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_32291 0 0 0 0 1 Ribosome 1 0.500231643921065 1 0.99953671215787 hm5C_site_32299 DeepMRMD:1;iRNA_m5C:0.99953671215787 32300 chr14 75936046 75936046 1 + G T SARC 75936065 + 75936045 75936085 41 AGCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTGAAC ATCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCTGAAC < 41bp 1 0.400780511028323 1 0.675119638442993 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936065 chr14:75936046 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_32292 0 0 0 0 1 Ribosome 1 0.500231533578494 0.649760723114014 0.999536932843011 hm5C_site_32300 DeepMRMD:0.649760723114014;iRNA_m5C:0.999536932843011 32301 chr14 102792474 102792474 1 + C A SARC 102792493 + 102792473 102792513 41 GCCCTCAGCTGCTCAGGGTACAGCCGCTTGTGAGAACCGAG GACCTCAGCTGCTCAGGGTACAGCCGCTTGTGAGAACCGAG < 41bp 1 0.29406085125517 1 0.2153360247612 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102792493 chr14:102792474 nonsynonymous SNV 0.575 1 2 hm5C_associated_SNPs_32293 0 0 0 0 0 chromatin 1 0.500231643921513 1 0.999536712156973 hm5C_site_32301 DeepMRMD:1;iRNA_m5C:0.999536712156973 32302 chr14 104565262 104565262 1 + G T SARC 104565260 + 104565240 104565280 41 GGTAGACGCTCGGAGGTTCGCAGCTTTCTGCTCCCCGAACC GGTAGACGCTCGGAGGTTCGCATCTTTCTGCTCCCCGAACC < 41bp 1 0.508887774454809 1 0.0984589755535126 experiment 0.982224451090382 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control ASPG ENSG00000166183 CDS Human protein_coding chr14:104565260 chr14:104565262 nonsynonymous SNV 0.916 3 23 hm5C_associated_SNPs_32294 0 0 0 0 2 exosome 1 0.500231643921612 1 0.999536712156776 hm5C_site_32302 DeepMRMD:1;iRNA_m5C:0.999536712156776 32303 chr15 69714743 69714743 1 + G T SARC 69714749 + 69714729 69714769 41 GTCAGAAAAGAGAAGCTATGCCCAATCCAAAGACTTCTTCT GTCAGAAAAGAGAATCTATGCCCAATCCAAAGACTTCTTCT < 41bp 1 0.463755096552323 1 0.0466523766517639 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714749 chr15:69714743 nonsynonymous SNV 0.994 0 15 hm5C_associated_SNPs_32295 0 0 1 0 2 Nucleus 1 0.500231643921938 1 0.999536712156124 hm5C_site_32303 DeepMRMD:1;iRNA_m5C:0.999536712156124 32304 chr15 90771578 90771578 1 + G T SARC 90771587 + 90771567 90771607 41 TTGCTCTACCGGCACCGGAACAGCATGAAAGTCTTCCTGAA TTGCTCTACCGTCACCGGAACAGCATGAAAGTCTTCCTGAA < 41bp 1 0.566921364419975 1 0.720015645027161 experiment 0.86615727116005 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90771587 chr15:90771578 synonymous SNV . 0 12 hm5C_associated_SNPs_32296 0 0 1 0 0 chromatin 1 0.500231643921094 0.559968709945678 0.999536712157812 hm5C_site_32304 DeepMRMD:0.559968709945678;iRNA_m5C:0.999536712157812 32305 chr15 100215645 100215645 1 + G T SARC 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAGACCTCACAGTGCCAAATGGATCTGGAAGCAGTC < 41bp 1 0.27714192232468 1 0.414067476987839 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215645 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_32297 0 0 1 0 2 Endoplasmic reticulum 1 0.50023150173451 1 0.999536996530979 hm5C_site_32305 DeepMRMD:1;iRNA_m5C:0.999536996530979 32306 chr16 723007 723007 1 + G T SARC 723004 + 722984 723024 41 GCCCGAAGGTGTCGCGGTGTCTGGCCCATCACCGGCCGAGT GCCCGAAGGTGTCGCGGTGTCTGTCCCATCACCGGCCGAGT < 41bp 1 0.345405798414215 1 0.219680368900299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:723004 chr16:723007 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_32298 0 0 1 0 1 Ribosome 1 0.500231639903864 1 0.999536720192272 hm5C_site_32306 DeepMRMD:1;iRNA_m5C:0.999536720192272 32307 chr16 31196311 31196311 1 + G T SARC 31196312 + 31196292 31196332 41 AGTGGTGGTGGCAGTGGTGGCGGTTATGGCAATCAAGACCA AGTGGTGGTGGCAGTGGTGTCGGTTATGGCAATCAAGACCA < 41bp 1 0.689074731742853 1 0.451544374227524 experiment 0.621850536514293 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control FUS ENSG00000089280 CDS Human protein_coding chr16:31196312 chr16:31196311 nonsynonymous SNV 0.764 4 20 hm5C_associated_SNPs_32299 0 0 1 0 1 Cytosol 1 0.500231680037618 1 0.999536639924764 hm5C_site_32307 DeepMRMD:1;iRNA_m5C:0.999536639924764 32308 chr16 57075436 57075436 1 + G T SARC 57075442 + 57075422 57075462 41 AAGCACCTAGAGCAGCTCTGCAAGGCTCTGGGAGGAAGCTG AAGCACCTAGAGCATCTCTGCAAGGCTCTGGGAGGAAGCTG < 41bp 1 0.512057809109566 1 0.270512610673904 experiment 0.975884381780868 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57075442 chr16:57075436 nonsynonymous SNV 0.253 1 15 hm5C_associated_SNPs_32300 0 0 0 0 2 Ribosome 1 0.500231643921053 1 0.999536712157894 hm5C_site_32308 DeepMRMD:1;iRNA_m5C:0.999536712157894 32309 chr16 67578995 67578995 1 + G T SARC 67578992 + 67578972 67579012 41 CAGTATGGTGCCCGCCTCTCCCTGCGCCAGCCAGGCTTGGC CAGTATGGTGCCCGCCTCTCCCTTCGCCAGCCAGGCTTGGC < 41bp 1 0.0240598369114881 1 0.0818909704685211 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578992 chr16:67578995 synonymous SNV . 0 24 hm5C_associated_SNPs_32301 0 0 1 0 1 unknown 1 0.500231640648605 1 0.99953671870279 hm5C_site_32309 DeepMRMD:1;iRNA_m5C:0.99953671870279 32310 chr16 70589052 70589052 1 + G T SARC 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC ATCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC < 41bp 1 0.304062013472657 1 0.115124017000198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589052 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_32302 0 0 1 0 2 Cytosol 1 0.500231643943707 1 0.999536712112586 hm5C_site_32310 DeepMRMD:1;iRNA_m5C:0.999536712112586 32311 chr17 4720022 4720022 1 + G T SARC 4720020 + 4720000 4720040 41 TTATCACCAAGGACTGGGTGCAGCTGGACCGGCCTTTCGAA TTATCACCAAGGACTGGGTGCATCTGGACCGGCCTTTCGAA < 41bp 1 0.101630794797817 1 0.0488791465759277 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4720020 chr17:4720022 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_32303 0 0 1 0 1 Cytosol 1 0.500231643917936 1 0.999536712164128 hm5C_site_32311 DeepMRMD:1;iRNA_m5C:0.999536712164128 32312 chr17 8172162 8172162 1 + G T SARC 8172177 + 8172157 8172197 41 GGAGTGCGCACGGGGAAGGTCAGGCCCAAGGAAGGCTGGGG GGAGTTCGCACGGGGAAGGTCAGGCCCAAGGAAGGCTGGGG < 41bp 1 0.520956061890432 1 0.753688454627991 experiment 0.958087876219137 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PFAS ENSG00000178921 CDS Human protein_coding chr17:8172177 chr17:8172162 nonsynonymous SNV 0.170 1 6 hm5C_associated_SNPs_32304 0 0 1 0 1 Nucleus 1 0.500231643921092 0.492623090744018 0.999536712157815 hm5C_site_32312 DeepMRMD:0.492623090744018;iRNA_m5C:0.999536712157815 32313 chr17 21731311 21731311 1 + G T SARC 21731317 + 21731297 21731337 41 GCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGTCGGTACTCTTTCTGACTACAACATCC < 41bp 1 0.148306333090187 1 0.126112043857574 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731317 chr17:21731311 nonsynonymous SNV 0.976 0 15 hm5C_associated_SNPs_32305 0 0 1 0 0 Ribosome 1 0.500231643918585 1 0.999536712162829 hm5C_site_32313 DeepMRMD:1;iRNA_m5C:0.999536712162829 32314 chr17 48149492 48149492 1 + G T SARC 48149482 + 48149462 48149502 41 TCACTCCTTCTTCATGGCCCCAGTGGCTCTGCCTTTGGTTT TCACTCCTTCTTCATGGCCCCAGTGGCTCTTCCTTTGGTTT < 41bp 1 0.147829255537134 1 0.131420940160751 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48149482 chr17:48149492 nonsynonymous SNV 0.717 0 31 hm5C_associated_SNPs_32306 0 0 0 0 0 Cytosol 1 0.500231661637575 1 0.99953667672485 hm5C_site_32314 DeepMRMD:1;iRNA_m5C:0.99953667672485 32315 chr17 52991185 52991185 1 + G T SARC 52991196 + 52991176 52991216 41 TTAAGAAAGGCGTTCAGTTTCCTCCCTCAGAAGCAGAGGCT TTAAGAAAGTCGTTCAGTTTCCTCCCTCAGAAGCAGAGGCT < 41bp 1 0.148650872984997 1 0.0515132248401642 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52991196 chr17:52991185 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_32307 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32315 DeepMRMD:1;iRNA_m5C:0.999536712157815 32316 chr17 57287555 57287555 1 + G T SARC 57287568 + 57287548 57287588 41 GAGATCTGCGTTGTGGGAATCTTCGGCAAGACGGCTCTACG GAGATCTTCGTTGTGGGAATCTTCGGCAAGACGGCTCTACG < 41bp 1 0.459094344881141 1 0.635786652565002 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMG8 ENSG00000167447 CDS Human protein_coding chr17:57287568 chr17:57287555 nonsynonymous SNV 0.997 3 8 hm5C_associated_SNPs_32308 0 0 1 0 0 chromatin 1 0.500231644286693 0.728426694869996 0.999536711426615 hm5C_site_32316 DeepMRMD:0.728426694869996;iRNA_m5C:0.999536711426615 32317 chr17 57771127 57771127 1 + G T SARC 57771132 + 57771112 57771152 41 GCAGGACCCAGTGTTGCCGTCCCTCCCCAGGCACCTTTTGG GCAGGACCCAGTGTTTCCGTCCCTCCCCAGGCACCTTTTGG < 41bp 1 0.0332625157441174 1 0.0767486393451691 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57771132 chr17:57771127 nonsynonymous SNV 0.999 1 16 hm5C_associated_SNPs_32309 0 0 1 0 1 Nucleus 1 0.500231643861366 1 0.999536712277268 hm5C_site_32317 DeepMRMD:1;iRNA_m5C:0.999536712277268 32318 chr17 62223718 62223718 1 + G T SARC 62223702 + 62223682 62223722 41 TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGA TGTGTGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCTCCGA < 41bp 1 0.274341709009392 1 0.0450522005558014 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223702 chr17:62223718 . . 0 37 hm5C_associated_SNPs_32310 0 0 1 4 0 unknown 1 0.500231691648998 1 0.999536616702005 hm5C_site_32318 DeepMRMD:1;iRNA_m5C:0.999536616702005 32319 chr17 62223718 62223718 1 + G T SARC 62223706 + 62223686 62223726 41 TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTT TGTCGTTGGCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTT < 41bp 1 0.307013736488637 1 0.0560866892337799 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223706 chr17:62223718 . . 0 33 hm5C_associated_SNPs_32311 0 0 1 4 0 unknown 1 0.500231643923515 1 0.99953671215297 hm5C_site_32319 DeepMRMD:1;iRNA_m5C:0.99953671215297 32320 chr17 62223718 62223718 1 + G T SARC 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTG < 41bp 1 0.128779562011319 1 0.0448211133480072 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223718 . . 0 26 hm5C_associated_SNPs_32312 0 0 1 4 0 unknown 1 0.500231643921095 1 0.99953671215781 hm5C_site_32320 DeepMRMD:1;iRNA_m5C:0.99953671215781 32321 chr17 62223718 62223718 1 + G T SARC 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGG < 41bp 1 0.168886173031979 1 0.0599079132080078 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223718 . . 0 25 hm5C_associated_SNPs_32313 0 0 1 4 0 unknown 1 0.500231643921088 1 0.999536712157823 hm5C_site_32321 DeepMRMD:1;iRNA_m5C:0.999536712157823 32322 chr17 62223718 62223718 1 + G T SARC 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGC < 41bp 1 0.0551994139057244 1 0.0331384837627411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223718 . . 0 24 hm5C_associated_SNPs_32314 0 0 1 4 0 unknown 1 0.500231643903095 1 0.99953671219381 hm5C_site_32322 DeepMRMD:1;iRNA_m5C:0.99953671219381 32323 chr17 62223718 62223718 1 + G T SARC 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCG < 41bp 1 0.0333584690997475 1 0.0497008562088013 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223718 . . 0 23 hm5C_associated_SNPs_32315 0 0 1 4 0 unknown 1 0.500231643859155 1 0.99953671228169 hm5C_site_32323 DeepMRMD:1;iRNA_m5C:0.99953671228169 32324 chr17 62223718 62223718 1 + G T SARC 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CGCTGTCTTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGG < 41bp 1 0.629094854955484 1 0.604879856109619 experiment 0.741810290089031 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223718 . . 0 19 hm5C_associated_SNPs_32316 0 0 1 4 0 unknown 1 0.500231643970124 0.790240287780762 0.999536712059751 hm5C_site_32324 DeepMRMD:0.790240287780762;iRNA_m5C:0.999536712059751 32325 chr17 62223718 62223718 1 + G T SARC 62223727 + 62223707 62223747 41 TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA TTTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAA < 41bp 1 0.216405234060655 1 0.245173364877701 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223727 chr17:62223718 . . 0 12 hm5C_associated_SNPs_32317 0 0 1 4 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_32325 DeepMRMD:1;iRNA_m5C:0.999536712157815 32326 chr17 62223718 62223718 1 + G T SARC 62223728 + 62223708 62223748 41 TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT TTGAGCCCCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT < 41bp 1 0.597556606547794 1 0.316085577011108 experiment 0.804886786904412 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223728 chr17:62223718 . . 0 11 hm5C_associated_SNPs_32318 0 0 1 4 0 unknown 1 0.500231643813773 1 0.999536712372454 hm5C_site_32326 DeepMRMD:1;iRNA_m5C:0.999536712372454 32327 chr17 62223718 62223718 1 + G T SARC 62223735 + 62223715 62223755 41 CCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC CCCTCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC < 41bp 1 0.641344359204468 1 0.107411712408066 experiment 0.717311281591063 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223735 chr17:62223718 . . 0 4 hm5C_associated_SNPs_32319 0 0 1 4 0 unknown 1 0.500231731499574 1 0.999536537000852 hm5C_site_32327 DeepMRMD:1;iRNA_m5C:0.999536537000852 32328 chr17 64685094 64685094 1 + G T SARC 64685113 + 64685093 64685133 41 AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG ATGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG < 41bp 1 0.0190773600776972 1 0.0385941863059998 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64685113 chr17:64685094 nonsynonymous SNV 0.994 3 2 hm5C_associated_SNPs_32320 0 0 1 0 2 Ribosome 1 0.500231643919406 1 0.999536712161187 hm5C_site_32328 DeepMRMD:1;iRNA_m5C:0.999536712161187 32329 chr17 67515557 67515557 1 + G T SARC 67515562 + 67515542 67515582 41 CTGTCACCTTTTATGGCGCACTGTTTCGGGAGGTAGGTGAC CTGTCACCTTTTATGTCGCACTGTTTCGGGAGGTAGGTGAC < 41bp 1 0.171302539098084 1 0.0311522483825684 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67515562 chr17:67515557 nonsynonymous SNV 0.980 3 16 hm5C_associated_SNPs_32321 0 0 1 0 1 cytosol 1 0.500231539958407 1 0.999536920083187 hm5C_site_32329 DeepMRMD:1;iRNA_m5C:0.999536920083187 32330 chr17 73058322 73058322 1 + G T SARC 73058313 + 73058293 73058333 41 AATAATTCTACCAATGGCATCGTCATAGAGCCGAGCGAAAA AATAATTCTACCAATGGCATCGTCATAGATCCGAGCGAAAA < 41bp 1 0.306159666159146 1 0.495502591133118 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058313 chr17:73058322 nonsynonymous SNV 0.995 2 30 hm5C_associated_SNPs_32322 0 0 1 0 1 Cytosol 1 0.500231613190131 1 0.999536773619738 hm5C_site_32330 DeepMRMD:1;iRNA_m5C:0.999536773619738 32331 chr17 73481968 73481968 1 + G T SARC 73481976 + 73481956 73481996 41 TGTGGAGAAGCAGCTTCCTCCACCACAGTAACCGCTGCTCC TGTGGAGAAGCATCTTCCTCCACCACAGTAACCGCTGCTCC < 41bp 1 0.619120880792507 1 0.395333826541901 experiment 0.761758238414987 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73481976 chr17:73481968 nonsynonymous SNV 0.994 1 13 hm5C_associated_SNPs_32323 0 0 1 0 1 Cytosol 1 0.500231643924798 1 0.999536712150405 hm5C_site_32331 DeepMRMD:1;iRNA_m5C:0.999536712150405 32332 chr17 73814852 73814852 1 + G T SARC 73814851 + 73814831 73814871 41 GTCCCCGGCATGAATGCAAACGCTCTGCCCTTCTACCCCAC GTCCCCGGCATGAATGCAAACTCTCTGCCCTTCTACCCCAC < 41bp 1 0.323335954877482 1 0.120396465063095 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814851 chr17:73814852 nonsynonymous SNV 0.985 3 22 hm5C_associated_SNPs_32324 0 0 1 0 1 Cytosol 1 0.500231643921129 1 0.999536712157743 hm5C_site_32332 DeepMRMD:1;iRNA_m5C:0.999536712157743 32333 chr17 73816122 73816122 1 + G T SARC 73816120 + 73816100 73816140 41 TCTCCTCGCATTTCCTGCAGCAGCCCCAGGGCCACCTGAGT TCTCCTCGCATTTCCTGCAGCATCCCCAGGGCCACCTGAGT < 41bp 1 0.029776955186529 1 0.0491118133068085 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73816120 chr17:73816122 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_32325 0 0 1 0 1 Cytosol 1 0.500231643932085 1 0.99953671213583 hm5C_site_32333 DeepMRMD:1;iRNA_m5C:0.99953671213583 32334 chr17 78087043 78087043 1 + G T SARC 78087058 + 78087038 78087078 41 AGCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT AGCGATCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT < 41bp 1 0.652299956753174 1 0.432698994874954 experiment 0.695400086493652 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78087058 chr17:78087043 nonsynonymous SNV 0.874 1 6 hm5C_associated_SNPs_32326 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_32334 DeepMRMD:1;iRNA_m5C:0.999536712157815 32335 chr18 12718626 12718626 1 + G T SARC 12718624 + 12718604 12718644 41 CATATCAGCGTAATGATCTGCAGCTTCGTAGGTATGTTTCT CATATCAGCGTAATGATCTGCATCTTCGTAGGTATGTTTCT < 41bp 1 0.149083842492486 1 0.0665208399295807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718624 chr18:12718626 nonsynonymous SNV 0.878 4 23 hm5C_associated_SNPs_32327 0 0 1 0 1 Ribosome 1 0.500228507327865 1 0.999542985344271 hm5C_site_32335 DeepMRMD:1;iRNA_m5C:0.999542985344271 32336 chr18 19423134 19423134 1 + G T SARC 19423125 + 19423105 19423145 41 TGGATATCCAGAATGTGAACCAACAAACTGCCCTACACCTT TGGATATCCAGAATGTGAACCAACAAACTTCCCTACACCTT < 41bp 1 0.4441356136949 1 0.339542984962463 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MIB1 ENSG00000101752 CDS Human protein_coding chr18:19423125 chr18:19423134 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_32328 0 0 1 0 0 Nucleus 1 0.50023164379979 1 0.99953671240042 hm5C_site_32336 DeepMRMD:1;iRNA_m5C:0.99953671240042 32337 chr18 48190624 48190624 1 + G T SARC 48190637 + 48190617 48190657 41 AAGTTCAGCGTGGCGTACATCGTCCAGGAGTACATGGAGAC AAGTTCATCGTGGCGTACATCGTCCAGGAGTACATGGAGAC < 41bp 1 0.16169133657716 1 0.248710095882416 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48190637 chr18:48190624 nonsynonymous SNV 0.992 2 8 hm5C_associated_SNPs_32329 0 0 0 0 0 exosome 1 0.500168919421826 1 0.999662161156348 hm5C_site_32337 DeepMRMD:1;iRNA_m5C:0.999662161156348 32338 chr18 59855030 59855030 1 + G T SARC 59855039 + 59855019 59855059 41 TTGATGCGATCGCTGCTCAGCTGTTGCGCGATCAATACTTG TTGATGCGATCTCTGCTCAGCTGTTGCGCGATCAATACTTG < 41bp 1 0.207345106783216 1 0.118531316518784 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA1468 ENSG00000134444 CDS Human protein_coding chr18:59855039 chr18:59855030 nonsynonymous SNV 0.999 3 12 hm5C_associated_SNPs_32330 0 0 1 0 0 Cytosol 1 0.50023189999712 1 0.999536200005761 hm5C_site_32338 DeepMRMD:1;iRNA_m5C:0.999536200005761 32339 chr19 1278985 1278985 1 + G T SARC 1278968 + 1278948 1278988 41 GACCTGTTGCCACCTGCACCCACCGCTGGACCATGCAGCCT GACCTGTTGCCACCTGCACCCACCGCTGGACCATGCATCCT < 41bp 1 0.696182345956937 1 0.14361959695816 experiment 0.607635308086127 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C19orf24 ENSG00000228300 CDS Human protein_coding chr19:1278968 chr19:1278985 nonsynonymous SNV 0.004 1 38 hm5C_associated_SNPs_32331 0 0 1 0 0 Ribosome 1 0.500231643921438 1 0.999536712157123 hm5C_site_32339 DeepMRMD:1;iRNA_m5C:0.999536712157123 32340 chr19 3574367 3574367 1 + G T SARC 3574378 + 3574358 3574398 41 AACGACGCAGCCCGGTTCTGCAGCCGGTGAAGAAACGCGGC AACGACGCATCCCGGTTCTGCAGCCGGTGAAGAAACGCGGC < 41bp 1 0.54805357343425 1 0.517544507980347 experiment 0.903892853131501 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HMG20B ENSG00000064961;ENSG00000064961 exonic;splicing Human other chr19:3574378 chr19:3574367 nonsynonymous SNV 0.006 1 10 hm5C_associated_SNPs_32333 0 0 1 0 0 Cytosol 1 0.500231665030851 0.964910984039306 0.999536669938299 hm5C_site_32340 DeepMRMD:0.964910984039306;iRNA_m5C:0.999536669938299 32341 chr19 4793201 4793201 1 + G T SARC 4793215 + 4793195 4793235 41 CTACGTGCTTCAGGACCGGGCCGCCAAAGGCAGCCTGGGCA CTACGTTCTTCAGGACCGGGCCGCCAAAGGCAGCCTGGGCA < 41bp 1 0.0820618397062012 1 0.0852966010570526 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FEM1A ENSG00000141965 CDS Human protein_coding chr19:4793215 chr19:4793201 synonymous SNV . 0 7 hm5C_associated_SNPs_32335 0 0 1 0 0 Ribosome 1 0.500231643921061 1 0.999536712157878 hm5C_site_32341 DeepMRMD:1;iRNA_m5C:0.999536712157878 32342 chr19 8528387 8528387 1 + G T SARC 8528388 + 8528368 8528408 41 GCTTCCTCCAAAGGGATGTGCGTAAGTATCGTCTAGTTACT GCTTCCTCCAAAGGGATGTTCGTAAGTATCGTCTAGTTACT < 41bp 1 0.439198164492151 1 0.15023735165596 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8528388 chr19:8528387 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32336 0 0 1 0 2 Nucleus 1 0.500231643757565 1 0.99953671248487 hm5C_site_32342 DeepMRMD:1;iRNA_m5C:0.99953671248487 32343 chr19 14020758 14020758 1 + G T SARC 14020742 + 14020722 14020762 41 GGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCA GGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAATCTCA < 41bp 1 0.396553850510934 1 0.747779428958893 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020742 chr19:14020758 nonsynonymous SNV 0.991 3 37 hm5C_associated_SNPs_32337 0 0 1 0 1 chromatin 1 0.500231643921102 0.504441142082214 0.999536712157796 hm5C_site_32343 DeepMRMD:0.504441142082214;iRNA_m5C:0.999536712157796 32344 chr19 14020758 14020758 1 + G T SARC 14020743 + 14020723 14020763 41 GCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAA GCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAATCTCAA < 41bp 1 0.251082492595212 1 0.502770245075226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020743 chr19:14020758 nonsynonymous SNV 0.991 3 36 hm5C_associated_SNPs_32338 0 0 1 0 1 chromatin 1 0.500231643921092 0.994459509849548 0.999536712157815 hm5C_site_32344 DeepMRMD:0.994459509849548;iRNA_m5C:0.999536712157815 32345 chr19 14020758 14020758 1 + G T SARC 14020744 + 14020724 14020764 41 CTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAA CTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAATCTCAAA < 41bp 1 0.14952183988149 1 0.320963621139526 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020744 chr19:14020758 nonsynonymous SNV 0.991 3 35 hm5C_associated_SNPs_32339 0 0 1 0 1 chromatin 1 0.500231643912868 1 0.999536712174263 hm5C_site_32345 DeepMRMD:1;iRNA_m5C:0.999536712174263 32346 chr19 14020758 14020758 1 + G T SARC 14020745 + 14020725 14020765 41 TTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAAG TTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAATCTCAAAG < 41bp 1 0.467297559346137 1 0.4886314868927 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020745 chr19:14020758 nonsynonymous SNV 0.991 3 34 hm5C_associated_SNPs_32340 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32346 DeepMRMD:1;iRNA_m5C:0.999536712157815 32347 chr19 14030649 14030649 1 + G T SARC 14030636 + 14030616 14030656 41 CGACTGGCCACCCAGGCTTCCCCCCAATCCAGGGCCTGGAG CGACTGGCCACCCAGGCTTCCCCCCAATCCAGGTCCTGGAG < 41bp 1 0.0657523039384859 1 0.034568727016449 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14030636 chr19:14030649 nonsynonymous SNV 0.948 4 34 hm5C_associated_SNPs_32341 0 0 1 0 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_32347 DeepMRMD:1;iRNA_m5C:0.999536712157818 32348 chr19 14561767 14561767 1 + G T SARC 14561750 + 14561730 14561770 41 CCAACCAGAAGCTGGGGCTGCTGCGGGAGGCTCTGGAGCGG CCAACCAGAAGCTGGGGCTGCTGCGGGAGGCTCTGGATCGG < 41bp 1 0.608945931882472 1 0.447457283735275 experiment 0.782108136235055 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561750 chr19:14561767 nonsynonymous SNV 0.980 0 38 hm5C_associated_SNPs_32342 0 0 1 0 1 Ribosome 1 0.500231643921267 1 0.999536712157467 hm5C_site_32348 DeepMRMD:1;iRNA_m5C:0.999536712157467 32349 chr19 14561767 14561767 1 + G T SARC 14561760 + 14561740 14561780 41 GCTGGGGCTGCTGCGGGAGGCTCTGGAGCGGAGACTTGGGG GCTGGGGCTGCTGCGGGAGGCTCTGGATCGGAGACTTGGGG < 41bp 1 0.255673244945637 1 0.279622942209244 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561760 chr19:14561767 nonsynonymous SNV 0.980 0 28 hm5C_associated_SNPs_32343 0 0 1 0 1 Ribosome 1 0.500231655626302 1 0.999536688747396 hm5C_site_32349 DeepMRMD:1;iRNA_m5C:0.999536688747396 32350 chr19 14562791 14562791 1 + G T SARC 14562777 + 14562757 14562797 41 CGCCCAGCCCGGGGCCTTTACAGCCGAAGCGGAAGCCTCAG CGCCCAGCCCGGGGCCTTTACAGCCGAAGCGGAATCCTCAG < 41bp 1 0.596141919444951 1 0.623228192329407 experiment 0.807716161110098 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562777 chr19:14562791 nonsynonymous SNV 0.997 3 35 hm5C_associated_SNPs_32344 0 0 1 0 1 Ribosome 1 0.500231643921092 0.753543615341186 0.999536712157815 hm5C_site_32350 DeepMRMD:0.753543615341186;iRNA_m5C:0.999536712157815 32351 chr19 18255951 18255951 1 + G T SARC 18255949 + 18255929 18255969 41 CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG CGGCCCCCCATCGTTATCCACATCTCTGGCAAGAAGTACGG < 41bp 1 0.0761859462625609 1 0.0266624093055725 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255949 chr19:18255951 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_32345 0 0 0 0 1 Cytosol 1 0.500246052601382 1 0.999507894797235 hm5C_site_32351 DeepMRMD:1;iRNA_m5C:0.999507894797235 32352 chr19 18856652 18856652 1 + G T SARC 18856662 + 18856642 18856682 41 CAATCCTCGGGCCTGGACACCAGCCGGACCACCCGGCACCA CAATCCTCGGTCCTGGACACCAGCCGGACCACCCGGCACCA < 41bp 1 0.328978816647358 1 0.233965009450912 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18856662 chr19:18856652 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_32347 0 0 1 0 1 Cytosol 1 0.500231799162989 1 0.999536401674021 hm5C_site_32352 DeepMRMD:1;iRNA_m5C:0.999536401674021 32353 chr19 18856652 18856652 1 + G T SARC 18856665 + 18856645 18856685 41 TCCTCGGGCCTGGACACCAGCCGGACCACCCGGCACCATGG TCCTCGGTCCTGGACACCAGCCGGACCACCCGGCACCATGG < 41bp 1 0.529487026196126 1 0.559209108352661 experiment 0.941025947607747 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18856665 chr19:18856652 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_32348 0 0 1 0 1 Cytosol 1 0.500231514198726 0.881581783294678 0.999536971602549 hm5C_site_32353 DeepMRMD:0.881581783294678;iRNA_m5C:0.999536971602549 32354 chr19 41811635 41811635 1 + G T SARC 41811651 + 41811631 41811671 41 CACAGCCCCACCGCCTCCACCTCCACCACCACCTGCCTACA CACATCCCCACCGCCTCCACCTCCACCACCACCTGCCTACA < 41bp 1 0.587535778952951 1 0.940007448196411 experiment 0.824928442094098 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41811651 chr19:41811635 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_32349 0 0 1 0 2 Cytosol 1 0.500231643935762 0.119985103607178 0.999536712128475 hm5C_site_32354 DeepMRMD:0.119985103607178;iRNA_m5C:0.999536712128475 32355 chr19 42410874 42410874 1 + G T SARC 42410885 + 42410865 42410905 41 AGGAATTTTGCCGCCTGAGACCCCTCCTGTCTCAGCTTGGG AGGAATTTTTCCGCCTGAGACCCCTCCTGTCTCAGCTTGGG < 41bp 1 0.137423559081667 1 0.0573893189430237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42410885 chr19:42410874 nonsynonymous SNV 0.989 1 10 hm5C_associated_SNPs_32350 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_32355 DeepMRMD:1;iRNA_m5C:0.999536712157815 32356 chr19 50339145 50339145 1 + G T SARC 50339146 + 50339126 50339166 41 CTCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAAC CTCCTGGACCCATCCTTCGTCCCCAGAACCCTGGGGCCAAC < 41bp 1 0.52000662566082 1 0.187844932079315 experiment 0.95998674867836 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339146 chr19:50339145 synonymous SNV 0.997 0 20 hm5C_associated_SNPs_32351 0 0 1 0 1 chromatin 1 0.500231643919412 1 0.999536712161176 hm5C_site_32356 DeepMRMD:1;iRNA_m5C:0.999536712161176 32357 chr19 50339145 50339145 1 + G T SARC 50339147 + 50339127 50339167 41 TCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACC TCCTGGACCCATCCTTCGTCCCCAGAACCCTGGGGCCAACC < 41bp 1 0.173790346462612 1 0.0891190767288208 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339147 chr19:50339145 synonymous SNV 0.997 0 19 hm5C_associated_SNPs_32352 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32357 DeepMRMD:1;iRNA_m5C:0.999536712157815 32358 chr19 50339145 50339145 1 + G T SARC 50339148 + 50339128 50339168 41 CCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCC CCTGGACCCATCCTTCGTCCCCAGAACCCTGGGGCCAACCC < 41bp 1 0.518407973163102 1 0.208131670951843 experiment 0.963184053673796 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339148 chr19:50339145 synonymous SNV 0.997 0 18 hm5C_associated_SNPs_32353 0 0 1 0 1 chromatin 1 0.500231671369654 1 0.999536657260692 hm5C_site_32358 DeepMRMD:1;iRNA_m5C:0.999536657260692 32359 chr19 50339145 50339145 1 + G T SARC 50339149 + 50339129 50339169 41 CTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCCT CTGGACCCATCCTTCGTCCCCAGAACCCTGGGGCCAACCCT < 41bp 1 0.526562169053434 1 0.157688140869141 experiment 0.946875661893133 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339149 chr19:50339145 synonymous SNV 0.997 0 17 hm5C_associated_SNPs_32354 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32359 DeepMRMD:1;iRNA_m5C:0.999536712157815 32360 chr19 50339145 50339145 1 + G T SARC 50339162 + 50339142 50339182 41 TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC TCGTCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC < 41bp 1 0.0166160992732365 1 0.0558922290802002 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339162 chr19:50339145 synonymous SNV 0.997 0 4 hm5C_associated_SNPs_32355 0 0 1 0 1 chromatin 1 0.500231605416484 1 0.999536789167032 hm5C_site_32360 DeepMRMD:1;iRNA_m5C:0.999536789167032 32361 chr19 50339145 50339145 1 + G T SARC 50339163 + 50339143 50339183 41 CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT CGTCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT < 41bp 1 0.134552838684025 1 0.0556862950325012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339163 chr19:50339145 synonymous SNV 0.997 0 3 hm5C_associated_SNPs_32356 0 0 1 0 1 chromatin 1 0.500231643920881 1 0.999536712158237 hm5C_site_32361 DeepMRMD:1;iRNA_m5C:0.999536712158237 32362 chr21 47978246 47978246 1 + G T SARC 47978252 + 47978232 47978272 41 AAGGACCTGGGCCTGCCGGCCCGCGCCGTAAGCACCACGTT AAGGACCTGGGCCTTCCGGCCCGCGCCGTAAGCACCACGTT < 41bp 1 0.309992652060514 1 0.441160887479782 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47978252 chr21:47978246 synonymous SNV . 0 15 hm5C_associated_SNPs_32358 0 0 1 0 1 Cytosol 1 0.500231643918766 1 0.999536712162468 hm5C_site_32362 DeepMRMD:1;iRNA_m5C:0.999536712162468 32363 chr22 30074249 30074249 1 + G T SARC 30074250 + 30074230 30074270 41 TTCAACCTCATTGGTGACAGCCTGTCTTTCGACTTCAAAGA TTCAACCTCATTGGTGACATCCTGTCTTTCGACTTCAAAGA < 41bp 1 0.134207930193517 1 0.14357516169548 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30074250 chr22:30074249 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_32359 0 0 1 0 2 Ribosome 1 0.500232998139407 1 0.999534003721185 hm5C_site_32363 DeepMRMD:1;iRNA_m5C:0.999534003721185 32364 chrX 48760269 48760269 1 + G T SARC 48760278 + 48760258 48760298 41 ACACCACAGCAGCTGGGCCCCTCTTCCAGCAGCGGCCGTAT ACACCACAGCATCTGGGCCCCTCTTCCAGCAGCGGCCGTAT < 41bp 1 0.428694310999186 1 0.0763109624385834 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48760278 chrX:48760269 nonsynonymous SNV 0.999 3 12 hm5C_associated_SNPs_32360 0 0 1 0 1 Ribosome 1 0.500231643921112 1 0.999536712157775 hm5C_site_32364 DeepMRMD:1;iRNA_m5C:0.999536712157775 32365 chrX 73040692 73040692 1 + G T SARC 73040673 - 73040653 73040693 41 GCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGATGT GATAAGATAAATGGAAGACTCTTGAACTTGTGAACTGATGT < 41bp 1 0.290296710642904 1 0.552836537361145 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040673 chrX:73040692 . . 0 2 hm5C_associated_SNPs_32361 0 0 1 1 0 unknown 1 0.500231643921085 0.89432692527771 0.999536712157829 hm5C_site_32365 DeepMRMD:0.89432692527771;iRNA_m5C:0.999536712157829 32366 chrX 73040692 73040692 1 + G T SARC 73040675 - 73040655 73040695 41 AAGCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGAT AAGATAAGATAAATGGAAGACTCTTGAACTTGTGAACTGAT < 41bp 1 0.0639483489105394 1 0.0788148939609528 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040675 chrX:73040692 . . 0 4 hm5C_associated_SNPs_32362 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_32366 DeepMRMD:1;iRNA_m5C:0.999536712157815 32367 chr4 88967961 88967961 1 + G A SARC 88967960 + 88967940 88967980 41 TGGAAGAGATATTGGAAATTCGCATTCACAAACTACACTAT TGGAAGAGATATTGGAAATTCACATTCACAAACTACACTAT < 41bp 1 0.275525344248046 1 0.391426146030426 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKD2 ENSG00000118762 CDS Human protein_coding chr4:88967960 chr4:88967961 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_32363 0 0 1 0 1 Endoplasmic reticulum 1 0.500229235992489 1 0.999541528015022 hm5C_site_32367 DeepMRMD:1;iRNA_m5C:0.999541528015022 32368 chr2 153494158 153494158 1 + T C SARC 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCCGTCTTTGTCCGGTTTGTGAAAGCATATAAG < 41bp 1 0.163583594879515 1 0.142303884029388 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494158 synonymous SNV . 0 11 hm5C_associated_SNPs_32365 0 0 0 0 2 Ribosome 1 0.500231644080261 1 0.999536711839477 hm5C_site_32368 DeepMRMD:1;iRNA_m5C:0.999536711839477 32369 chr11 17316992 17316992 1 + A G SARC 17316973 + 17316953 17316993 41 ACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGGAA ACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGGGA < 41bp 1 0.63282382595038 1 0.0877411067485809 experiment 0.73435234809924 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316973 chr11:17316992 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_32366 0 0 1 0 1 Ribosome 1 0.500231643920502 1 0.999536712158996 hm5C_site_32369 DeepMRMD:1;iRNA_m5C:0.999536712158996 32370 chr6 29910602 29910602 1 + G T SARC 29910604 + 29910584 29910624 41 GGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACAC GGGGAGCCCCGCTTCATCTCCGTGGGCTACGTGGACGACAC < 41bp 1 0.66925963098168 1 0.779435276985168 experiment 0.66148073803664 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29910604 chr6:29910602 nonsynonymous SNV 0.000 2 19 hm5C_associated_SNPs_32367 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643281819 0.441129446029664 0.999536713436362 hm5C_site_32370 DeepMRMD:0.441129446029664;iRNA_m5C:0.999536713436362 32371 chr10 134980985 134980985 1 + G C SARC 134980995 + 134980975 134981015 41 TCCATGCGGAGCGTGGCCCACGCCGCCATCTTCCAGAGCCT TCCATGCGGACCGTGGCCCACGCCGCCATCTTCCAGAGCCT < 41bp 1 0.42166292769195 1 0.201328247785568 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:134980995 chr10:134980985 nonsynonymous SNV 0.060 4 11 hm5C_associated_SNPs_32368 0 0 1 0 1 Endoplasmic reticulum 1 0.50023116114746 1 0.999537677705081 hm5C_site_32371 DeepMRMD:1;iRNA_m5C:0.999537677705081 32372 chr2 160605149 160605149 1 + G A SARC 160605129 + 160605109 160605149 41 ACAGAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAG ACAGAATGATCCTCTTGGAGCTGCTGCCAACAGACCACAAA < 41bp 1 0.615577126611678 1 0.121255576610565 experiment 0.768845746776645 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160605129 chr2:160605149 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_32369 0 0 1 0 0 Cytosol 1 0.500231683759049 1 0.999536632481903 hm5C_site_32372 DeepMRMD:1;iRNA_m5C:0.999536632481903 32373 chr4 123145709 123145709 1 + C G SARC 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTGCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG < 41bp 1 0.4584980398072 1 0.32269212603569 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145709 synonymous SNV . 0 6 hm5C_associated_SNPs_32370 0 0 1 0 2 Nucleus 1 0.500232424709089 1 0.999535150581823 hm5C_site_32373 DeepMRMD:1;iRNA_m5C:0.999535150581823 32374 chr1 198231724 198231724 1 + C T SARC 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGTCAAAGCACGTGCTGATTGCATCAAAGAAATAG < 41bp 1 0.178764374493338 1 0.0911081731319427 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231724 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_32371 0 0 0 0 2 Nucleus 1 0.500232146803459 1 0.999535706393082 hm5C_site_32374 DeepMRMD:1;iRNA_m5C:0.999535706393082 32375 chr4 154245295 154245295 1 + G T SARC 154245282 + 154245262 154245302 41 GAGATTATTATTACAGATTTCCATAATCATTCTGTCAAGGT GAGATTATTATTACAGATTTCCATAATCATTCTTTCAAGGT < 41bp 1 0.092104091574292 1 0.0787844657897949 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154245282 chr4:154245295 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_32372 0 0 1 0 2 Ribosome 1 0.500227183827586 1 0.999545632344827 hm5C_site_32375 DeepMRMD:1;iRNA_m5C:0.999545632344827 32376 chr6 33646250 33646250 1 + A G SARC 33646267 + 33646247 33646287 41 AGAAGTTCTGTGCAGGGAACCCCGGCAACCAGGCCCTGCTG AGAGGTTCTGTGCAGGGAACCCCGGCAACCAGGCCCTGCTG < 41bp 1 0.32761963014002 1 0.238783836364746 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33646267 chr6:33646250 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_32373 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_32376 DeepMRMD:1;iRNA_m5C:0.999536712157815 32377 chr5 179153701 179153701 1 + G A SARC 179153689 + 179153669 179153709 41 CTTCTGTCTTAGAAGAGAAACAGAAAAGTGATGCTGAAGAA CTTCTGTCTTAGAAGAGAAACAGAAAAGTGATACTGAAGAA < 41bp 1 0.654264824157426 1 0.40679132938385 experiment 0.691470351685148 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153689 chr5:179153701 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_32374 0 0 1 0 2 Nucleus 1 0.500231644561135 1 0.99953671087773 hm5C_site_32377 DeepMRMD:1;iRNA_m5C:0.99953671087773 32378 chr5 179153701 179153701 1 + G A SARC 179153718 + 179153698 179153738 41 GATGCTGAAGAAGATGGTGGCACTGTCAGTCAAGAGGAGGA GATACTGAAGAAGATGGTGGCACTGTCAGTCAAGAGGAGGA < 41bp 1 0.287710361013172 1 0.0860960185527802 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179153718 chr5:179153701 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_32376 0 0 1 0 2 Nucleus 1 0.500231643965401 1 0.999536712069198 hm5C_site_32378 DeepMRMD:1;iRNA_m5C:0.999536712069198 32379 chr5 179153701 179153701 1 + G A SARC 179153720 + 179153700 179153740 41 TGCTGAAGAAGATGGTGGCACTGTCAGTCAAGAGGAGGAAG TACTGAAGAAGATGGTGGCACTGTCAGTCAAGAGGAGGAAG < 41bp 1 0.166292398721756 1 0.127440214157104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179153720 chr5:179153701 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_32377 0 0 1 0 2 Nucleus 1 0.500231643967178 1 0.999536712065644 hm5C_site_32379 DeepMRMD:1;iRNA_m5C:0.999536712065644 32380 chr7 94917931 94917931 1 + C T SARC 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCATTGGTTA < 41bp 1 0.564166172911836 1 0.133418262004852 experiment 0.871667654176329 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917931 synonymous SNV . 0 35 hm5C_associated_SNPs_32379 0 0 0 0 2 Nucleus 1 0.500231643921112 1 0.999536712157776 hm5C_site_32380 DeepMRMD:1;iRNA_m5C:0.999536712157776 32381 chr19 8551120 8551120 1 + G A SARC 8551103 + 8551083 8551123 41 CGCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGGCAT CGCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGACAT < 41bp 1 0.612506174883591 1 0.0977891683578491 experiment 0.774987650232817 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551103 chr19:8551120 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_32380 0 0 1 0 0 Nucleus 1 0.500231643415653 1 0.999536713168694 hm5C_site_32381 DeepMRMD:1;iRNA_m5C:0.999536713168694 32382 chr19 8551120 8551120 1 + G A SARC 8551104 + 8551084 8551124 41 GCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGGCATT GCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGACATT < 41bp 1 0.491859399507306 1 0.209218889474869 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551104 chr19:8551120 nonsynonymous SNV 0.997 3 37 hm5C_associated_SNPs_32381 0 0 1 0 0 Nucleus 1 0.500231644101938 1 0.999536711796124 hm5C_site_32382 DeepMRMD:1;iRNA_m5C:0.999536711796124 32383 chr6 110059609 110059609 1 + A G SARC 110059608 + 110059588 110059628 41 ATATAATTAAAAGTACTGTGCATCGTGACTGGCTTTTGTAT ATATAATTAAAAGTACTGTGCGTCGTGACTGGCTTTTGTAT < 41bp 1 0.111390076914917 1 0.0592632293701172 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FIG4 ENSG00000112367 CDS Human protein_coding chr6:110059608 chr6:110059609 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_32383 0 0 1 0 2 Cytosol 1 0.500230776335335 1 0.99953844732933 hm5C_site_32383 DeepMRMD:1;iRNA_m5C:0.99953844732933 32384 chr6 31604863 31604863 1 + G T SARC 31604866 + 31604846 31604886 41 CAGGATTATCAAAAACTGAGCAGCAACCTTGGGGGACCTGG CAGGATTATCAAAAACTTAGCAGCAACCTTGGGGGACCTGG < 41bp 1 0.599757639694147 1 0.542932331562042 experiment 0.800484720611706 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604866 chr6:31604863 synonymous SNV . 0 18 hm5C_associated_SNPs_32384 0 0 1 0 2 Ribosome 1 0.500231643921093 0.914135336875916 0.999536712157813 hm5C_site_32384 DeepMRMD:0.914135336875916;iRNA_m5C:0.999536712157813 32385 chr6 31604868 31604868 1 + G T SARC 31604866 + 31604846 31604886 41 CAGGATTATCAAAAACTGAGCAGCAACCTTGGGGGACCTGG CAGGATTATCAAAAACTGAGCATCAACCTTGGGGGACCTGG < 41bp 1 0.371962868558697 1 0.0708874762058258 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31604866 chr6:31604868 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_32385 0 0 1 0 2 Ribosome 1 0.500231643703884 1 0.999536712592233 hm5C_site_32385 DeepMRMD:1;iRNA_m5C:0.999536712592233 32386 chrX 47101592 47101592 1 + G T SARC 47101578 + 47101558 47101598 41 CAAGTCCACGCTGGTGTGCCCCGATTGTGGCAATGTATCTG CAAGTCCACGCTGGTGTGCCCCGATTGTGGCAATTTATCTG < 41bp 1 0.151748215330614 1 0.0644755661487579 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47101578 chrX:47101592 nonsynonymous SNV 0.958 1 35 hm5C_associated_SNPs_32386 0 0 1 0 0 cytosol 1 0.500231758727051 1 0.999536482545899 hm5C_site_32386 DeepMRMD:1;iRNA_m5C:0.999536482545899 32387 chr1 180012301 180012301 1 + G T SARC 180012302 + 180012282 180012322 41 TTCCAGACTTTGTGAAACAGCTGAGGACCAGAACTGAAACA TTCCAGACTTTGTGAAACATCTGAGGACCAGAACTGAAACA < 41bp 1 0.540150417851991 1 0.316316545009613 experiment 0.919699164296017 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180012302 chr1:180012301 nonsynonymous SNV 0.638 0 20 hm5C_associated_SNPs_32387 0 0 1 0 1 Nucleus 1 0.500231643921067 1 0.999536712157866 hm5C_site_32387 DeepMRMD:1;iRNA_m5C:0.999536712157866 32388 chr1 43124106 43124106 1 + C T SARC 43124111 + 43124091 43124131 41 CCCGACTTCTGCTTCCGGGTCGGAGCCATGGCGGTGGCAAA CCCGACTTCTGCTTCTGGGTCGGAGCCATGGCGGTGGCAAA < 41bp 1 0.611867444074903 1 0.734655797481537 experiment 0.776265111850194 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PPIH ENSG00000171960 UTR5 Human protein_coding chr1:43124111 chr1:43124106 . . 0 16 hm5C_associated_SNPs_32388 0 0 1 0 1 Cytosol 1 0.500231643921129 0.530688405036926 0.999536712157741 hm5C_site_32388 DeepMRMD:0.530688405036926;iRNA_m5C:0.999536712157741 32389 chr1 183519982 183519982 1 + C T SARC 183519963 + 183519943 183519983 41 GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTTC < 41bp 1 0.396161009381669 1 0.121208101511002 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519963 chr1:183519982 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_32389 0 0 1 0 2 Cytosol 1 0.500231643703701 1 0.999536712592597 hm5C_site_32389 DeepMRMD:1;iRNA_m5C:0.999536712592597 32390 chr1 183519983 183519983 1 + C T SARC 183519963 + 183519943 183519983 41 GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCT < 41bp 1 0.330988515296942 1 0.112538367509842 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519963 chr1:183519983 synonymous SNV . 0 41 hm5C_associated_SNPs_32390 0 0 1 0 2 Cytosol 1 0.50023164392593 1 0.999536712148141 hm5C_site_32390 DeepMRMD:1;iRNA_m5C:0.999536712148141 32391 chr5 176863465 176863465 1 + C T SARC 176863468 + 176863448 176863488 41 GAGGTGAAGGAGCACCCCCTCTTTAAGAAGCTGAACTTCAA GAGGTGAAGGAGCACCCTCTCTTTAAGAAGCTGAACTTCAA < 41bp 1 0.430238297784646 1 0.199055045843124 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863468 chr5:176863465 synonymous SNV . 0 18 hm5C_associated_SNPs_32392 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32391 DeepMRMD:1;iRNA_m5C:0.999536712157815 32392 chr9 139975207 139975207 1 + C T SARC 139975202 + 139975182 139975222 41 CCCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCC CCCCACTGAAGAACGCAGAGCCAGCTGACAGGGACAGTCCC < 41bp 1 0.103963554291515 1 0.493384420871735 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975202 chr9:139975207 synonymous SNV . 0 26 hm5C_associated_SNPs_32393 0 0 1 0 1 Ribosome 1 0.500231972549298 1 0.999536054901404 hm5C_site_32392 DeepMRMD:1;iRNA_m5C:0.999536054901404 32393 chr9 139975207 139975207 1 + C T SARC 139975203 + 139975183 139975223 41 CCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCCC CCCACTGAAGAACGCAGAGCCAGCTGACAGGGACAGTCCCC < 41bp 1 0.473951677597017 1 0.476031720638275 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975203 chr9:139975207 synonymous SNV . 0 25 hm5C_associated_SNPs_32394 0 0 1 0 1 Ribosome 1 0.500231638947654 1 0.999536722104692 hm5C_site_32393 DeepMRMD:1;iRNA_m5C:0.999536722104692 32394 chr10 102824587 102824587 1 + G A SARC 102824602 + 102824582 102824622 41 GACCAGCTGAACTCTACAGGCATCCCCCAGCTGCGATCACT GACCAACTGAACTCTACAGGCATCCCCCAGCTGCGATCACT < 41bp 1 0.0334004461360336 1 0.0526277124881744 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824602 chr10:102824587 synonymous SNV . 0 6 hm5C_associated_SNPs_32395 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32394 DeepMRMD:1;iRNA_m5C:0.999536712157815 32395 chr14 71444585 71444585 1 + G A SARC 71444573 + 71444553 71444593 41 CTTCCCAAGGGGACAGACCACCTGGGAACACTGCAGAAAAC CTTCCCAAGGGGACAGACCACCTGGGAACACTACAGAAAAC < 41bp 1 0.213605265116787 1 0.669636189937592 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71444573 chr14:71444585 nonsynonymous SNV 0.003 0 33 hm5C_associated_SNPs_32396 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643007914 0.660727620124816 0.999536713984173 hm5C_site_32395 DeepMRMD:0.660727620124816;iRNA_m5C:0.999536713984173 32396 chr14 71444585 71444585 1 + G A SARC 71444574 + 71444554 71444594 41 TTCCCAAGGGGACAGACCACCTGGGAACACTGCAGAAAACA TTCCCAAGGGGACAGACCACCTGGGAACACTACAGAAAACA < 41bp 1 0.52209951816202 1 0.752257287502289 experiment 0.95580096367596 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71444574 chr14:71444585 nonsynonymous SNV 0.003 0 32 hm5C_associated_SNPs_32397 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.495485424995422 0.999536712157815 hm5C_site_32396 DeepMRMD:0.495485424995422;iRNA_m5C:0.999536712157815 32397 chr19 2850662 2850662 1 + C T SARC 2850663 + 2850643 2850683 41 TGGATTCTGCTCAGAGGGACCTCTACAGAGATGTGATGCTG TGGATTCTGCTCAGAGGGATCTCTACAGAGATGTGATGCTG < 41bp 1 0.615961940194683 1 0.917482137680054 experiment 0.768076119610635 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF555 ENSG00000186300 CDS Human protein_coding chr19:2850663 chr19:2850662 synonymous SNV . 0 20 hm5C_associated_SNPs_32398 0 0 0 0 2 Cytosol 1 0.500128146897947 0.165035724639892 0.999743706204105 hm5C_site_32397 DeepMRMD:0.165035724639892;iRNA_m5C:0.999743706204105 32398 chr19 50031746 50031746 1 + C T SARC 50031728 + 50031708 50031748 41 CTTTGCCACTCCCCAGGGACCGATGATGTGGCGACCATCAG CTTTGCCACTCCCCAGGGACCGATGATGTGGCGACCATTAG < 41bp 1 0.540726425258485 1 0.41703662276268 experiment 0.918547149483031 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RCN3 ENSG00000142552 CDS Human protein_coding chr19:50031728 chr19:50031746 nonsynonymous SNV 0.018 0 39 hm5C_associated_SNPs_32399 0 0 1 0 1 membrane 1 0.500231643919087 1 0.999536712161826 hm5C_site_32398 DeepMRMD:1;iRNA_m5C:0.999536712161826 32399 chr6 44221273 44221273 1 + C G SARC 44221288 + 44221268 44221308 41 CAGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGAT CAGTTGCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGAT < 41bp 1 0.0518695458705699 1 0.0410882830619812 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221288 chr6:44221273 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_32400 0 0 1 0 1 Nucleus 1 0.500231644708646 1 0.999536710582709 hm5C_site_32399 DeepMRMD:1;iRNA_m5C:0.999536710582709 32400 chr6 44221273 44221273 1 + C G SARC 44221289 + 44221269 44221309 41 AGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATG AGTTGCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATG < 41bp 1 0.304219762861038 1 0.188214391469955 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221289 chr6:44221273 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_32401 0 0 1 0 1 Nucleus 1 0.50023164392117 1 0.99953671215766 hm5C_site_32400 DeepMRMD:1;iRNA_m5C:0.99953671215766 32401 chr5 71495175 71495175 1 + G A SARC 71495192 + 71495172 71495212 41 GTGGCCACACACTTGGGGACCCCAGCTACTCTTATGAAACC GTGACCACACACTTGGGGACCCCAGCTACTCTTATGAAACC < 41bp 1 0.0857362817603646 1 0.150597155094147 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71495192 chr5:71495175 nonsynonymous SNV 0.989 1 4 hm5C_associated_SNPs_32403 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32401 DeepMRMD:1;iRNA_m5C:0.999536712157815 32402 chr11 130003584 130003584 1 + A C SARC 130003575 + 130003555 130003595 41 GGAGGAACCAAAGCCTCTCTCTGCTCTACAAAGTACCTTAT GGAGGAACCAAAGCCTCTCTCTGCTCTACCAAGTACCTTAT < 41bp 1 0.50947729353768 1 0.513987064361572 experiment 0.98104541292464 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003575 chr11:130003584 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_32406 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921248 0.972025871276856 0.999536712157504 hm5C_site_32402 DeepMRMD:0.972025871276856;iRNA_m5C:0.999536712157504 32403 chr17 26685947 26685947 1 + C G SARC 26685943 + 26685923 26685963 41 AACCTTTTCTTCTCAGATTCCAAACTATACCTCCATGAGCT AACCTTTTCTTCTCAGATTCCAAAGTATACCTCCATGAGCT < 41bp 1 0.325910107829207 1 0.451225787401199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM199 ENSG00000244045 CDS Human protein_coding chr17:26685943 chr17:26685947 nonsynonymous SNV 0.973 0 25 hm5C_associated_SNPs_32407 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_32403 DeepMRMD:1;iRNA_m5C:0.999536712157816 32404 chr9 131847005 131847005 1 + C T SARC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATCGTTGGTTTCGTGACCCT < 41bp 1 0.591501310148412 1 0.330249965190887 experiment 0.816997379703176 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847005 synonymous SNV . 0 27 hm5C_associated_SNPs_32409 0 0 1 0 2 Ribosome 1 0.50023164392623 1 0.99953671214754 hm5C_site_32404 DeepMRMD:1;iRNA_m5C:0.99953671214754 32405 chr9 129974455 129974455 1 + G T SARC 129974474 + 129974454 129974494 41 TGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTC TTCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTC < 41bp 1 0.596368275990078 1 0.365530908107758 experiment 0.807263448019844 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129974474 chr9:129974455 synonymous SNV . 0 2 hm5C_associated_SNPs_32410 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32405 DeepMRMD:1;iRNA_m5C:0.999536712157815 32406 chrX 9661245 9661245 1 + G T SARC 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG CGGTTTTGCAAGAATATGGACTGAAGATGGTGAGTTCTGTG < 41bp 1 0.42090067557964 1 0.0954459011554718 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661245 synonymous SNV . 0 22 hm5C_associated_SNPs_32411 0 0 0 0 2 Cytosol 1 0.500231693308176 1 0.999536613383648 hm5C_site_32406 DeepMRMD:1;iRNA_m5C:0.999536613383648 32407 chr3 4856236 4856236 1 + C A SARC 4856235 + 4856215 4856255 41 TAGGAGATGTACTCAGGAAGCCGTCCAAAGAGGTAAATTAA TAGGAGATGTACTCAGGAAGCAGTCCAAAGAGGTAAATTAA < 41bp 1 0.0965884590403437 1 0.628832995891571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4856235 chr3:4856236 nonsynonymous SNV 0.974 5 22 hm5C_associated_SNPs_32412 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920503 0.742334008216858 0.999536712158994 hm5C_site_32407 DeepMRMD:0.742334008216858;iRNA_m5C:0.999536712158994 32408 chr1 113238120 113238120 1 + G A SARC 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC CCAGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC < 41bp 1 0.0510049744243883 1 0.0426943004131317 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238120 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_32413 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32408 DeepMRMD:1;iRNA_m5C:0.999536712157815 32409 chr9 72659550 72659550 1 + G A SARC 72659530 + 72659510 72659550 41 CGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTG CGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTA < 41bp 1 0.478238995102751 1 0.161248415708542 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659530 chr9:72659550 nonsynonymous SNV 0.998 4 41 hm5C_associated_SNPs_32414 0 0 0 0 2 nucleus 1 0.500231643921075 1 0.99953671215785 hm5C_site_32409 DeepMRMD:1;iRNA_m5C:0.99953671215785 32410 chr9 72659550 72659550 1 + G A SARC 72659531 + 72659511 72659551 41 GCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGA GCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTAA < 41bp 1 0.669033918268593 1 0.596844732761383 experiment 0.661932163462813 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659531 chr9:72659550 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_32415 0 0 0 0 2 nucleus 1 0.500231643921092 0.806310534477234 0.999536712157815 hm5C_site_32410 DeepMRMD:0.806310534477234;iRNA_m5C:0.999536712157815 32411 chr9 72659550 72659550 1 + G A SARC 72659539 + 72659519 72659559 41 CCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGAAGAGAGCA CCTCGACCTGCCCGCTGGGTCCTGTGCCTTTAAAGAGAGCA < 41bp 1 0.24801651565282 1 0.251961708068848 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659539 chr9:72659550 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_32417 0 0 0 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32411 DeepMRMD:1;iRNA_m5C:0.999536712157815 32412 chr9 72659550 72659550 1 + G A SARC 72659545 + 72659525 72659565 41 CCTGCCCGCTGGGTCCTGTGCCTTTGAAGAGAGCACTTGCG CCTGCCCGCTGGGTCCTGTGCCTTTAAAGAGAGCACTTGCG < 41bp 1 0.0699537752468035 1 0.0241696536540985 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659545 chr9:72659550 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_32418 0 0 0 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32412 DeepMRMD:1;iRNA_m5C:0.999536712157815 32413 chr9 72659550 72659550 1 + G A SARC 72659558 + 72659538 72659578 41 TCCTGTGCCTTTGAAGAGAGCACTTGCGGCTTTGACTCCGT TCCTGTGCCTTTAAAGAGAGCACTTGCGGCTTTGACTCCGT < 41bp 1 0.327663606858432 1 0.0257466435432434 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659558 chr9:72659550 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_32419 0 0 0 0 2 nucleus 1 0.500231642481637 1 0.999536715036726 hm5C_site_32413 DeepMRMD:1;iRNA_m5C:0.999536715036726 32414 chr9 72659550 72659550 1 + G A SARC 72659560 + 72659540 72659580 41 CTGTGCCTTTGAAGAGAGCACTTGCGGCTTTGACTCCGTGT CTGTGCCTTTAAAGAGAGCACTTGCGGCTTTGACTCCGTGT < 41bp 1 0.37053646116934 1 0.0295674502849579 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659560 chr9:72659550 nonsynonymous SNV 0.998 4 11 hm5C_associated_SNPs_32420 0 0 0 0 2 nucleus 1 0.500231659592087 1 0.999536680815826 hm5C_site_32414 DeepMRMD:1;iRNA_m5C:0.999536680815826 32415 chr9 72659550 72659550 1 + G A SARC 72659567 + 72659547 72659587 41 TTTGAAGAGAGCACTTGCGGCTTTGACTCCGTGTTGGCCTC TTTAAAGAGAGCACTTGCGGCTTTGACTCCGTGTTGGCCTC < 41bp 1 0.179535578567343 1 0.142364263534546 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72659567 chr9:72659550 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_32421 0 0 0 0 2 nucleus 1 0.500231643921076 1 0.999536712157849 hm5C_site_32415 DeepMRMD:1;iRNA_m5C:0.999536712157849 32416 chr11 124502104 124502104 1 + A G SARC 124502089 + 124502069 124502109 41 GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCACAGGG GTAGATACTCACCTGCAGCACTTGAAGTCTCCATCGCAGGG < 41bp 1 0.625019573823489 1 0.0816570818424225 experiment 0.749960852353023 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502089 chr11:124502104 synonymous SNV . 0 36 hm5C_associated_SNPs_32422 0 0 1 2 0 Ribosome 1 0.500231968864394 1 0.999536062271213 hm5C_site_32416 DeepMRMD:1;iRNA_m5C:0.999536062271213 32417 chr15 93528743 93528743 1 + A G SARC 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCAGACAAATGACGGTGACTCTGACACTGAGTC < 41bp 1 0.277457513590073 1 0.0738440454006195 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528743 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_32423 0 0 1 0 1 Nucleus 1 0.500231643063453 1 0.999536713873094 hm5C_site_32417 DeepMRMD:1;iRNA_m5C:0.999536713873094 32418 chr15 93528762 93528762 1 + C A SARC 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTA < 41bp 1 0.229578521346873 1 0.0491126477718353 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528762 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_32424 0 0 1 0 1 Nucleus 1 0.500231629205778 1 0.999536741588444 hm5C_site_32418 DeepMRMD:1;iRNA_m5C:0.999536741588444 32419 chr19 12734576 12734576 1 + T G SARC 12734581 + 12734561 12734601 41 GTGGGCTCTGCTGGCTCCTTCACAGAAGAAACTCTACAGAG GTGGGCTCTGCTGGCGCCTTCACAGAAGAAACTCTACAGAG < 41bp 1 0.642554616789624 1 0.52692836523056 experiment 0.714890766420751 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF791 ENSG00000173875 CDS Human protein_coding chr19:12734581 chr19:12734576 synonymous SNV . 0 16 hm5C_associated_SNPs_32425 0 0 1 0 2 Cytosol 1 0.500231643921093 0.94614326953888 0.999536712157815 hm5C_site_32419 DeepMRMD:0.94614326953888;iRNA_m5C:0.999536712157815 32420 chr19 41128389 41128389 1 + C A SARC 41128394 + 41128374 41128414 41 CCCCTGCCCCGCCGACCCAGCACACCTAGGCAGGGCCCTGT CCCCTGCCCCGCCGAACCAGCACACCTAGGCAGGGCCCTGT < 41bp 1 0.209861672440229 1 0.0886281728744507 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41128394 chr19:41128389 nonsynonymous SNV 0.163 2 16 hm5C_associated_SNPs_32426 0 0 0 0 1 Cytosol 1 0.500231643927213 1 0.999536712145574 hm5C_site_32420 DeepMRMD:1;iRNA_m5C:0.999536712145574 32421 chr22 32445989 32445989 1 + G A SARC 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATAGT < 41bp 1 0.249710754980328 1 0.242094337940216 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445989 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_32427 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32421 DeepMRMD:1;iRNA_m5C:0.999536712157815 32422 chr14 103932063 103932063 1 + G T SARC 103932076 + 103932056 103932096 41 GATGTGTGGAGTCTGGGGGTCATTTTATACACACTAGTCAG GATGTGTTGAGTCTGGGGGTCATTTTATACACACTAGTCAG < 41bp 1 0.111360761414709 1 0.0669708847999573 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK3 ENSG00000075413 CDS Human protein_coding chr14:103932076 chr14:103932063 nonsynonymous SNV 0.973 4 8 hm5C_associated_SNPs_32428 0 0 1 0 1 Cytosol 1 0.500231643921127 1 0.999536712157746 hm5C_site_32422 DeepMRMD:1;iRNA_m5C:0.999536712157746 32423 chr15 43632472 43632472 1 + G T SARC 43632491 + 43632471 43632511 41 AGATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC ATATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC < 41bp 1 0.466365885033371 1 0.431919097900391 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADAL ENSG00000168803 CDS Human protein_coding chr15:43632491 chr15:43632472 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_32429 0 0 1 0 1 chromatin 1 0.500231643860719 1 0.999536712278563 hm5C_site_32423 DeepMRMD:1;iRNA_m5C:0.999536712278563 32424 chrX 70787352 70787352 1 + T A SARC 70787359 + 70787339 70787379 41 CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGTGTACTC CCCTATTTTAGATACTGAAGCGTGTTCCCAATAGTGTACTC < 41bp 1 0.214327900381433 1 0.114023178815842 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70787359 chrX:70787352 synonymous SNV . 0 14 hm5C_associated_SNPs_32430 0 0 1 0 1 Nucleus 1 0.500231643921203 1 0.999536712157594 hm5C_site_32424 DeepMRMD:1;iRNA_m5C:0.999536712157594 32425 chr8 26227825 26227825 1 + G C SARC 26227822 + 26227802 26227842 41 ATGAAATAAGTGTTGACAGCCTAGACTTCAATAAGAAAATC ATGAAATAAGTGTTGACAGCCTACACTTCAATAAGAAAATC < 41bp 1 0.510601372153999 1 0.350491940975189 experiment 0.978797255692001 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26227822 chr8:26227825 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_32431 0 0 1 0 0 Cytosol 1 0.500231643920897 1 0.999536712158206 hm5C_site_32425 DeepMRMD:1;iRNA_m5C:0.999536712158206 32426 chrX 153663637 153663637 1 + G C SARC 153663636 + 153663616 153663656 41 CCAGGTTCATTCTGGCCAACCGCCTCTACCCAGTGTCTGCC CCAGGTTCATTCTGGCCAACCCCCTCTACCCAGTGTCTGCC < 41bp 1 0.135128420901427 1 0.0377902388572693 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153663636 chrX:153663637 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_32432 0 0 1 0 1 Ribosome 1 0.500231643921086 1 0.999536712157828 hm5C_site_32426 DeepMRMD:1;iRNA_m5C:0.999536712157828 32427 chr1 118499757 118499757 1 + C T SARC 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AATGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG < 41bp 1 0.17532893698251 1 0.0771330893039703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499757 synonymous SNV . 0 3 hm5C_associated_SNPs_32433 0 0 1 0 2 Nucleus 1 0.500231643920891 1 0.999536712158219 hm5C_site_32427 DeepMRMD:1;iRNA_m5C:0.999536712158219 32428 chr10 105172954 105172954 1 + C T SARC 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTCCTACAGCCTGGATGCCCACTCACCCGACTCTCTTGCC < 41bp 1 0.136529581837666 1 0.0752956569194794 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172954 nonsynonymous SNV 0.631 1 17 hm5C_associated_SNPs_32434 0 0 1 0 1 Nucleus 1 0.500231643864045 1 0.999536712271909 hm5C_site_32428 DeepMRMD:1;iRNA_m5C:0.999536712271909 32429 chr17 54939227 54939227 1 + G A SARC 54939235 + 54939215 54939255 41 GGATACTGGGGCGGTGGCTGCAGACTATGGGAAGGGATGGG GGATACTGGGGCAGTGGCTGCAGACTATGGGAAGGGATGGG < 41bp 1 0.382441979319348 1 0.704069793224335 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54939235 chr17:54939227 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_32435 0 0 0 0 2 Ribosome 1 0.500231643921092 0.59186041355133 0.999536712157815 hm5C_site_32429 DeepMRMD:0.59186041355133;iRNA_m5C:0.999536712157815 32430 chrX 49103971 49103971 1 + G T SARC 49103974 + 49103954 49103994 41 TAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGATGTGCC TAGGAGCCCCAGGCCCATGCCACTCAGGTGTCAGATGTGCC < 41bp 1 0.112745781812875 1 0.0494912266731262 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103974 chrX:49103971 nonsynonymous SNV 0.967 1 18 hm5C_associated_SNPs_32436 0 0 0 0 2 Cytosol 1 0.500231643906713 1 0.999536712186573 hm5C_site_32430 DeepMRMD:1;iRNA_m5C:0.999536712186573 32431 chr2 224824683 224824683 1 + G T SARC 224824686 + 224824666 224824706 41 ATTGGAGCCCTGTTACAGAGCAGTGGACCTGAGAGGACTGC ATTGGAGCCCTGTTACATAGCAGTGGACCTGAGAGGACTGC < 41bp 1 0.614446125742664 1 0.363405346870422 experiment 0.771107748514671 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824686 chr2:224824683 nonsynonymous SNV 0.998 0 18 hm5C_associated_SNPs_32437 0 0 1 0 0 Ribosome 1 0.500231644998465 1 0.99953671000307 hm5C_site_32431 DeepMRMD:1;iRNA_m5C:0.99953671000307 32432 chr4 160264507 160264507 1 + G T SARC 160264487 + 160264467 160264507 41 TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTG TGAGAAGCTAAGGATGATTGCAAAAGAAATTCGTCACGTTT < 41bp 1 0.58980453074421 1 0.617821455001831 experiment 0.82039093851158 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264487 chr4:160264507 nonsynonymous SNV 0.994 1 41 hm5C_associated_SNPs_32438 0 0 1 0 2 Cytosol 1 0.500231685494191 0.764357089996338 0.999536629011618 hm5C_site_32432 DeepMRMD:0.764357089996338;iRNA_m5C:0.999536629011618 32433 chr2 220473312 220473312 1 + C G SARC 220473305 + 220473285 220473325 41 TTCTCTTGGTCTCTCCACAGCGGAACTCTGTCGCCCCTTGT TTCTCTTGGTCTCTCCACAGCGGAACTGTGTCGCCCCTTGT < 41bp 1 0.577293851203943 1 0.479629755020142 experiment 0.845412297592113 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STK11IP ENSG00000144589 CDS Human protein_coding chr2:220473305 chr2:220473312 synonymous SNV . 0 28 hm5C_associated_SNPs_32439 0 0 1 0 1 chromatin 1 0.500231642329285 1 0.99953671534143 hm5C_site_32433 DeepMRMD:1;iRNA_m5C:0.99953671534143 32434 chr11 57575922 57575922 1 + C T SARC 57575904 + 57575884 57575924 41 CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACTTC < 41bp 1 0.0755986218855203 1 0.0472707152366638 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575904 chr11:57575922 nonsynonymous SNV 0.994 5 39 hm5C_associated_SNPs_32440 0 0 1 0 2 Nucleus 1 0.500231642914969 1 0.999536714170061 hm5C_site_32434 DeepMRMD:1;iRNA_m5C:0.999536714170061 32435 chr7 142459736 142459736 1 + G T SARC 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTT < 41bp 1 0.430341245824141 1 0.120378524065018 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459736 synonymous SNV . 0 41 hm5C_associated_SNPs_32441 0 0 0 0 0 Cytosol 1 0.50023164392399 1 0.99953671215202 hm5C_site_32435 DeepMRMD:1;iRNA_m5C:0.99953671215202 32436 chr7 142459736 142459736 1 + G T SARC 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCCCCAATACGACAGGAAGACTCTTAACAATGACATCATGT < 41bp 1 0.34535568315872 1 0.0800624489784241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459736 synonymous SNV . 0 25 hm5C_associated_SNPs_32442 0 0 0 0 0 Cytosol 1 0.500277735369854 1 0.999444529260292 hm5C_site_32436 DeepMRMD:1;iRNA_m5C:0.999444529260292 32437 chr7 142459736 142459736 1 + G T SARC 142459734 + 142459714 142459754 41 CCCAATACGACAGGAAGACTCTGAACAATGACATCATGTTA CCCAATACGACAGGAAGACTCTTAACAATGACATCATGTTA < 41bp 1 0.645860069268136 1 0.234685570001602 experiment 0.708279861463728 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459734 chr7:142459736 synonymous SNV . 0 23 hm5C_associated_SNPs_32443 0 0 0 0 0 Cytosol 1 0.500231644948559 1 0.999536710102882 hm5C_site_32437 DeepMRMD:1;iRNA_m5C:0.999536710102882 32438 chr7 142459736 142459736 1 + G T SARC 142459739 + 142459719 142459759 41 TACGACAGGAAGACTCTGAACAATGACATCATGTTAATCAA TACGACAGGAAGACTCTTAACAATGACATCATGTTAATCAA < 41bp 1 0.568617423357738 1 0.306093454360962 experiment 0.862765153284525 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459739 chr7:142459736 synonymous SNV . 0 18 hm5C_associated_SNPs_32444 0 0 0 0 0 Cytosol 1 0.500231644162044 1 0.999536711675912 hm5C_site_32438 DeepMRMD:1;iRNA_m5C:0.999536711675912 32439 chr7 142459736 142459736 1 + G T SARC 142459745 + 142459725 142459765 41 AGGAAGACTCTGAACAATGACATCATGTTAATCAAGCTCTC AGGAAGACTCTTAACAATGACATCATGTTAATCAAGCTCTC < 41bp 1 0.542884823637782 1 0.0830951333045959 experiment 0.914230352724437 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459745 chr7:142459736 synonymous SNV . 0 12 hm5C_associated_SNPs_32445 0 0 0 0 0 Cytosol 1 0.500230890367145 1 0.999538219265711 hm5C_site_32439 DeepMRMD:1;iRNA_m5C:0.999538219265711 32440 chr7 142459736 142459736 1 + G T SARC 142459748 + 142459728 142459768 41 AAGACTCTGAACAATGACATCATGTTAATCAAGCTCTCCTC AAGACTCTTAACAATGACATCATGTTAATCAAGCTCTCCTC < 41bp 1 0.529233260703723 1 0.0434178411960602 experiment 0.941533478592555 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459748 chr7:142459736 synonymous SNV . 0 9 hm5C_associated_SNPs_32446 0 0 0 0 0 Cytosol 1 0.500250021091977 1 0.999499957816046 hm5C_site_32440 DeepMRMD:1;iRNA_m5C:0.999499957816046 32441 chr1 37947330 37947330 1 + G T SARC 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG TGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG < 41bp 1 0.238685757428587 1 0.217749029397964 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947330 nonsynonymous SNV 0.689 4 1 hm5C_associated_SNPs_32447 0 0 0 0 0 Nucleus 1 0.500231643918527 1 0.999536712162945 hm5C_site_32441 DeepMRMD:1;iRNA_m5C:0.999536712162945 32442 chr5 1036455 1036455 1 + T A SARC 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACACGGAGCGCAGAAACCACTACCAGGACCTCGCCGG < 41bp 1 0.212660742188896 1 0.193335443735123 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036455 nonsynonymous SNV 0.996 4 29 hm5C_associated_SNPs_32449 0 0 0 0 2 exosome 1 0.500231643921585 1 0.999536712156829 hm5C_site_32442 DeepMRMD:1;iRNA_m5C:0.999536712156829 32443 chr5 1036455 1036455 1 + T A SARC 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACACGGAGCGCAGAAACCACTACCAGGACCTCGCCGGG < 41bp 1 0.572111770597927 1 0.26235020160675 experiment 0.855776458804145 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036455 nonsynonymous SNV 0.996 4 28 hm5C_associated_SNPs_32450 0 0 0 0 2 exosome 1 0.500232201681728 1 0.999535596636544 hm5C_site_32443 DeepMRMD:1;iRNA_m5C:0.999535596636544 32444 chr2 10560064 10560064 1 + G C SARC 10560051 + 10560031 10560071 41 AAGATCTACGCCAACTTCTTCCCCTACGGCGACGCTTCCAA AAGATCTACGCCAACTTCTTCCCCTACGGCGACCCTTCCAA < 41bp 1 0.104233349982265 1 0.225900620222092 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10560051 chr2:10560064 nonsynonymous SNV 0.990 1 34 hm5C_associated_SNPs_32451 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32444 DeepMRMD:1;iRNA_m5C:0.999536712157815 32445 chr11 73007975 73007975 1 + C A SARC 73007963 + 73007943 73007983 41 GCATCTGCCACCCGCTGGCCCCCTGGCACAAACGTGGGGGC GCATCTGCCACCCGCTGGCCCCCTGGCACAAAAGTGGGGGC < 41bp 1 0.207293461587641 1 0.0707937180995941 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control P2RY6 ENSG00000171631 CDS Human protein_coding chr11:73007963 chr11:73007975 nonsynonymous SNV 0.997 0 33 hm5C_associated_SNPs_32452 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32445 DeepMRMD:1;iRNA_m5C:0.999536712157815 32446 chr14 73550231 73550231 1 + A T SARC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGTGTACAAGGTGCTTCCGGAAAGCTT < 41bp 1 0.587062360122631 1 0.471704095602036 experiment 0.825875279754737 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550231 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_32453 0 0 1 0 2 Nucleus 1 0.50023165010842 1 0.99953669978316 hm5C_site_32446 DeepMRMD:1;iRNA_m5C:0.99953669978316 32447 chr7 106797466 106797466 1 + G T SARC 106797463 + 106797443 106797483 41 TTCTTTTTTCATTGTAGAATCTGGAGAAGTGAAAATTACTA TTCTTTTTTCATTGTAGAATCTGTAGAAGTGAAAATTACTA < 41bp 1 0.442372443848859 1 0.401453495025635 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797463 chr7:106797466 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_32454 0 0 1 0 2 Ribosome 1 0.500231650631545 1 0.999536698736911 hm5C_site_32447 DeepMRMD:1;iRNA_m5C:0.999536698736911 32448 chr13 111164409 111164409 1 + C T SARC 111164391 + 111164371 111164411 41 TGCAATGGAGGCCGCGGCACCTGCCACTACTACGCCAACAA TGCAATGGAGGCCGCGGCACCTGCCACTACTACGCCAATAA < 41bp 1 0.185600552576129 1 0.317409962415695 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111164391 chr13:111164409 synonymous SNV . 0 39 hm5C_associated_SNPs_32455 0 0 1 0 0 Cytosol 1 0.500231644321728 1 0.999536711356544 hm5C_site_32448 DeepMRMD:1;iRNA_m5C:0.999536711356544 32449 chr9 131107639 131107639 1 + C T SARC 131107631 + 131107611 131107651 41 TGTAGCCAACTTCCTGCAGGCCCGGGGCCTGGCCTCGGGCG TGTAGCCAACTTCCTGCAGGCCCGGGGCTTGGCCTCGGGCG < 41bp 1 0.497073822468588 1 0.317719519138336 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131107631 chr9:131107639 synonymous SNV . 0 29 hm5C_associated_SNPs_32456 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32449 DeepMRMD:1;iRNA_m5C:0.999536712157815 32450 chr22 38352837 38352837 1 + G T SARC 38352831 + 38352811 38352851 41 GAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGT GAGGATGAAGGGCTAGATGACTTGGATAATGCCGAAGAGGT < 41bp 1 0.559425010237742 1 0.223052978515625 experiment 0.881149979524516 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352831 chr22:38352837 nonsynonymous SNV 0.984 1 27 hm5C_associated_SNPs_32458 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32450 DeepMRMD:1;iRNA_m5C:0.999536712157815 32451 chr22 38352837 38352837 1 + G T SARC 38352843 + 38352823 38352863 41 CTAGATGACTTGGAGAATGCCGAAGAGGTCAGTATTCAGCC CTAGATGACTTGGATAATGCCGAAGAGGTCAGTATTCAGCC < 41bp 1 0.633979761933704 1 0.528724193572998 experiment 0.732040476132592 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352843 chr22:38352837 nonsynonymous SNV 0.984 1 15 hm5C_associated_SNPs_32459 0 0 1 0 3 Ribosome 1 0.500231417046574 0.942551612854004 0.999537165906851 hm5C_site_32451 DeepMRMD:0.942551612854004;iRNA_m5C:0.999537165906851 32452 chr5 14359550 14359550 1 + G T SARC 14359530 + 14359510 14359550 41 TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCT < 41bp 1 0.309215325034477 1 0.531204164028168 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359530 chr5:14359550 synonymous SNV . 0 41 hm5C_associated_SNPs_32460 0 0 1 0 2 Nucleus 1 0.500233059949321 0.937591671943664 0.999533880101358 hm5C_site_32452 DeepMRMD:0.937591671943664;iRNA_m5C:0.999533880101358 32453 chr5 14359550 14359550 1 + G T SARC 14359551 + 14359531 14359571 41 TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTC TGCAGCAGCTGGACGAGGCTCAGTCGCAGATGGAGGAGCTC < 41bp 1 0.0834602996074458 1 0.246335715055466 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359551 chr5:14359550 synonymous SNV . 0 20 hm5C_associated_SNPs_32461 0 0 1 0 2 Nucleus 1 0.500231643848402 1 0.999536712303197 hm5C_site_32453 DeepMRMD:1;iRNA_m5C:0.999536712303197 32454 chr5 14359550 14359550 1 + G T SARC 14359555 + 14359535 14359575 41 GCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTCTTCC GCAGCTGGACGAGGCTCAGTCGCAGATGGAGGAGCTCTTCC < 41bp 1 0.593170604039369 1 0.858298540115356 experiment 0.813658791921262 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359555 chr5:14359550 synonymous SNV . 0 16 hm5C_associated_SNPs_32462 0 0 1 0 2 Nucleus 1 0.500231643921092 0.283402919769288 0.999536712157815 hm5C_site_32454 DeepMRMD:0.283402919769288;iRNA_m5C:0.999536712157815 32455 chr17 40936573 40936573 1 + G A SARC 40936572 + 40936552 40936592 41 CTCCGAGTGCCAGAATGCCGCGCAAATCTACCGCAAGGTCA CTCCGAGTGCCAGAATGCCGCACAAATCTACCGCAAGGTCA < 41bp 1 0.570525419757195 1 0.119558721780777 experiment 0.858949160485611 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936572 chr17:40936573 synonymous SNV . 0 22 hm5C_associated_SNPs_32463 0 0 0 0 1 chromatin 1 0.500231647874776 1 0.999536704250448 hm5C_site_32455 DeepMRMD:1;iRNA_m5C:0.999536704250448 32456 chr9 100418026 100418026 1 + C T SARC 100418035 + 100418015 100418055 41 AACTTCCAGTTCCGTTGGAGCTGGGAAGATTGGTAAGTGAT AACTTCCAGTTTCGTTGGAGCTGGGAAGATTGGTAAGTGAT < 41bp 1 0.510313669134923 1 0.569613218307495 experiment 0.979372661730155 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100418035 chr9:100418026 synonymous SNV . 0 12 hm5C_associated_SNPs_32464 0 0 1 0 2 Nucleus 1 0.500231643921092 0.86077356338501 0.999536712157815 hm5C_site_32456 DeepMRMD:0.86077356338501;iRNA_m5C:0.999536712157815 32457 chr1 183881229 183881229 1 + T C SARC 183881247 + 183881227 183881267 41 GGTCTGACATGATCACCAGTCCCACTCCCACCAAAGAGCAG GGCCTGACATGATCACCAGTCCCACTCCCACCAAAGAGCAG < 41bp 1 0.107482152909163 1 0.040304958820343 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RGL1 ENSG00000143344 CDS Human protein_coding chr1:183881247 chr1:183881229 nonsynonymous SNV 0.939 0 3 hm5C_associated_SNPs_32465 0 0 0 0 1 cytosol 1 0.500233226187421 1 0.999533547625159 hm5C_site_32457 DeepMRMD:1;iRNA_m5C:0.999533547625159 32458 chr1 183094669 183094669 1 + G A SARC 183094656 + 183094636 183094676 41 GCTTGTGACCCTGGATTCTACAATCTGCAGAGTGGGCAAGG GCTTGTGACCCTGGATTCTACAATCTGCAGAGTAGGCAAGG < 41bp 1 0.14426770577856 1 0.135522097349167 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183094656 chr1:183094669 nonsynonymous SNV 0.998 4 34 hm5C_associated_SNPs_32466 0 0 1 0 1 Ribosome 1 0.500231644079335 1 0.99953671184133 hm5C_site_32458 DeepMRMD:1;iRNA_m5C:0.99953671184133 32459 chr5 172315757 172315757 1 + G T SARC 172315759 + 172315739 172315779 41 CAGCCAACGTACACCGGGGCCATTAGTGAGTAGCCAACCTC CAGCCAACGTACACCGGGTCCATTAGTGAGTAGCCAACCTC < 41bp 1 0.190553822164734 1 0.0318441987037659 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172315759 chr5:172315757 nonsynonymous SNV 0.993 3 19 hm5C_associated_SNPs_32467 0 0 1 0 2 Cytosol 1 0.500231643920882 1 0.999536712158236 hm5C_site_32459 DeepMRMD:1;iRNA_m5C:0.999536712158236 32460 chr19 42398371 42398371 1 + C A SARC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAAGAAGTCGGGGAGGAACTTCTTCAGGAAAAAGGTGCT < 41bp 1 0.134309500828248 1 0.388009250164032 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398371 synonymous SNV . 0 28 hm5C_associated_SNPs_32469 0 0 0 0 2 Cytosol 1 0.500231643919859 1 0.999536712160282 hm5C_site_32460 DeepMRMD:1;iRNA_m5C:0.999536712160282 32461 chr11 68204446 68204446 1 + G T SARC 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACTGCTCCGACGAGCTCATGTGTGGTG < 41bp 1 0.186735038718159 1 0.141347348690033 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204446 nonsynonymous SNV 0.247 4 17 hm5C_associated_SNPs_32470 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643962487 1 0.999536712075025 hm5C_site_32461 DeepMRMD:1;iRNA_m5C:0.999536712075025 32462 chr11 68204446 68204446 1 + G T SARC 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACTGCTCCGACGAGCTCATGTGTGGTGA < 41bp 1 0.39918423949541 1 0.63078761100769 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204446 nonsynonymous SNV 0.247 4 16 hm5C_associated_SNPs_32471 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921091 0.73842477798462 0.999536712157817 hm5C_site_32462 DeepMRMD:0.73842477798462;iRNA_m5C:0.999536712157817 32463 chr12 6943091 6943091 1 + G T SARC 6943099 + 6943079 6943119 41 TCCCTGGCAGATGTCCTTCTCCTGGAGGGTGTGACCTTGAC TCCCTGGCAGATTTCCTTCTCCTGGAGGGTGTGACCTTGAC < 41bp 1 0.227405251372092 1 0.835982620716095 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6943099 chr12:6943091 nonsynonymous SNV 0.269 0 13 hm5C_associated_SNPs_32472 0 0 1 0 1 membrane 1 0.500231643852654 0.32803475856781 0.999536712294692 hm5C_site_32463 DeepMRMD:0.32803475856781;iRNA_m5C:0.999536712294692 32464 chr18 29116347 29116347 1 + A G SARC 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCCGTCATTGACGAACCACCTGGCATGGCAGAAAAA < 41bp 1 0.0822151763078011 1 0.136341273784637 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116347 nonsynonymous SNV 0.495 0 18 hm5C_associated_SNPs_32473 0 0 1 0 1 Endoplasmic reticulum 1 0.500231382727222 1 0.999537234545557 hm5C_site_32464 DeepMRMD:1;iRNA_m5C:0.999537234545557 32465 chr18 29116347 29116347 1 + A G SARC 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCCGTCATTGACGAACCACCTGGCATGGCAGAAAAATGGA < 41bp 1 0.497213236333206 1 0.197096794843674 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116347 nonsynonymous SNV 0.495 0 14 hm5C_associated_SNPs_32474 0 0 1 0 1 Endoplasmic reticulum 1 0.500231667484429 1 0.999536665031141 hm5C_site_32465 DeepMRMD:1;iRNA_m5C:0.999536665031141 32466 chr18 29116347 29116347 1 + A G SARC 29116363 + 29116343 29116383 41 TGACAAACCACCTGGCATGGCAGAAAAATGGAAAATAGCAC TGACGAACCACCTGGCATGGCAGAAAAATGGAAAATAGCAC < 41bp 1 0.592617478512666 1 0.321021944284439 experiment 0.814765042974669 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116363 chr18:29116347 nonsynonymous SNV 0.495 0 5 hm5C_associated_SNPs_32475 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_32466 DeepMRMD:1;iRNA_m5C:0.999536712157815 32467 chr1 17265593 17265593 1 + G A SARC 17265609 + 17265589 17265629 41 GCTCGCCCTGATCCACTCCGCCCTGCACAAGCGCCAGCTGC GCTCACCCTGATCCACTCCGCCCTGCACAAGCGCCAGCTGC < 41bp 1 0.0840922386484778 1 0.140870034694672 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17265609 chr1:17265593 nonsynonymous SNV 0.937 0 5 hm5C_associated_SNPs_32476 0 0 0 0 1 chromatin 1 0.500244909423693 1 0.999510181152614 hm5C_site_32467 DeepMRMD:1;iRNA_m5C:0.999510181152614 32468 chr9 93624510 93624510 1 + G A SARC 93624497 + 93624477 93624517 41 CTCTCTTCTAGGATCCGAGCCAGAGACAACAACGGCTCCTA CTCTCTTCTAGGATCCGAGCCAGAGACAACAACAGCTCCTA < 41bp 1 0.508774816342962 1 0.883859515190125 experiment 0.982450367314075 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624497 chr9:93624510 nonsynonymous SNV 0.850 4 34 hm5C_associated_SNPs_32477 0 0 0 0 1 Cytosol 1 0.500231643921093 0.23228096961975 0.999536712157815 hm5C_site_32468 DeepMRMD:0.23228096961975;iRNA_m5C:0.999536712157815 32469 chr12 104720164 104720164 1 + A T SARC 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACAAGAAAATTTGGCTTAGAAACCGTAGGGGTGAA < 41bp 1 0.202889341420675 1 0.0446728467941284 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720164 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_32478 0 0 1 0 2 Ribosome 1 0.500231643921102 1 0.999536712157797 hm5C_site_32469 DeepMRMD:1;iRNA_m5C:0.999536712157797 32470 chr4 48835496 48835496 1 + G C SARC 48835494 + 48835474 48835514 41 AATGATGAAAGCTTCTGGTTCAGATGTGAGTTCAATTTTCT AATGATGAAAGCTTCTGGTTCACATGTGAGTTCAATTTTCT < 41bp 1 0.286962781247844 1 0.087748646736145 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835494 chr4:48835496 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_32479 0 0 1 3 2 Ribosome 1 0.50028736459032 1 0.99942527081936 hm5C_site_32470 DeepMRMD:1;iRNA_m5C:0.99942527081936 32471 chr4 126337712 126337712 1 + T A SARC 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGAAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT < 41bp 1 0.619916643790314 1 0.951237916946411 experiment 0.760166712419373 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337712 nonsynonymous SNV 0.722 2 4 hm5C_associated_SNPs_32480 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643938261 0.097524166107178 0.999536712123479 hm5C_site_32471 DeepMRMD:0.097524166107178;iRNA_m5C:0.999536712123479 32472 chr5 176524315 176524315 1 + T A SARC 176524296 + 176524276 176524316 41 CGCCCCACCTCTCGCAGGTACGGGCTGATGCGTGAGTGCTG CGCCCCACCTCTCGCAGGTACGGGCTGATGCGTGAGTGCAG < 41bp 1 0.541766472314992 1 0.582093358039856 experiment 0.916467055370017 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524296 chr5:176524315 nonsynonymous SNV 0.980 5 40 hm5C_associated_SNPs_32481 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643737988 0.835813283920288 0.999536712524023 hm5C_site_32472 DeepMRMD:0.835813283920288;iRNA_m5C:0.999536712524023 32473 chr7 73604158 73604158 1 + G T SARC 73604152 + 73604132 73604172 41 TATTTTCCCTTTATCATTAGCTGTTGGGCGATCGGTCACTT TATTTTCCCTTTATCATTAGCTGTTGTGCGATCGGTCACTT < 41bp 1 0.241814518497093 1 0.0184942781925201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73604152 chr7:73604158 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_32482 0 0 1 0 2 Ribosome 1 0.50023164385039 1 0.99953671229922 hm5C_site_32473 DeepMRMD:1;iRNA_m5C:0.99953671229922 32474 chr6 42996963 42996963 1 + G T SARC 42996946 + 42996926 42996966 41 CAGGCAAGGACAGGAGACATCTCCCTTTGAGCAAAGAGTAA CAGGCAAGGACAGGAGACATCTCCCTTTGAGCAAAGATTAA < 41bp 1 0.420193459858664 1 0.721584737300873 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RRP36 ENSG00000124541 CDS Human protein_coding chr6:42996946 chr6:42996963 nonsynonymous SNV 0.905 1 38 hm5C_associated_SNPs_32483 0 0 1 0 0 Ribosome 1 0.500231643845993 0.556830525398254 0.999536712308014 hm5C_site_32474 DeepMRMD:0.556830525398254;iRNA_m5C:0.999536712308014 32475 chr7 76112183 76112183 1 + C T SARC 76112193 + 76112173 76112213 41 GAACTGGCCCCGTGTCAGGCCGCTACCGCCACTCCATGACC GAACTGGCCCTGTGTCAGGCCGCTACCGCCACTCCATGACC < 41bp 1 0.44227660678897 1 0.245681464672089 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76112193 chr7:76112183 synonymous SNV . 0 11 hm5C_associated_SNPs_32484 0 0 1 0 0 Nucleus 1 0.500243738720622 1 0.999512522558756 hm5C_site_32475 DeepMRMD:1;iRNA_m5C:0.999512522558756 32476 chr1 16057088 16057088 1 + C T SARC 16057075 + 16057055 16057095 41 GCCTTGTGCACTGGGAGGACCCCACAGACGAGTCCCTGGGC GCCTTGTGCACTGGGAGGACCCCACAGACGAGTTCCTGGGC < 41bp 1 0.0955173383790526 1 0.189346730709076 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16057075 chr1:16057088 nonsynonymous SNV 0.966 0 34 hm5C_associated_SNPs_32485 0 0 1 0 1 chromatin 1 0.500231643921122 1 0.999536712157757 hm5C_site_32476 DeepMRMD:1;iRNA_m5C:0.999536712157757 32477 chr1 16057089 16057089 1 + C T SARC 16057075 + 16057055 16057095 41 GCCTTGTGCACTGGGAGGACCCCACAGACGAGTCCCTGGGC GCCTTGTGCACTGGGAGGACCCCACAGACGAGTCTCTGGGC < 41bp 1 0.094841996478901 1 0.168963879346848 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16057075 chr1:16057089 synonymous SNV . 0 35 hm5C_associated_SNPs_32486 0 0 1 0 1 chromatin 1 0.50023164405736 1 0.999536711885281 hm5C_site_32477 DeepMRMD:1;iRNA_m5C:0.999536711885281 32478 chr1 114483816 114483816 1 + T C SARC 114483796 + 114483776 114483816 41 CTTTCAGCATAAGAATCACACCTGCCTTGTTTTTGAAATGT CTTTCAGCATAAGAATCACACCTGCCTTGTTTTTGAAATGC < 41bp 1 0.0325707043328383 1 0.115395158529282 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114483796 chr1:114483816 synonymous SNV . 0 41 hm5C_associated_SNPs_32487 0 0 1 0 0 Cytosol 1 0.500231658662558 1 0.999536682674883 hm5C_site_32478 DeepMRMD:1;iRNA_m5C:0.999536682674883 32479 chr3 124351509 124351509 1 + C T SARC 124351528 + 124351508 124351548 41 GCCTGGGGATGAAACAACCCCTCAGGGAGACAGCGCTGATG GTCTGGGGATGAAACAACCCCTCAGGGAGACAGCGCTGATG < 41bp 1 0.338698144260582 1 0.252815812826157 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124351528 chr3:124351509 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_32488 0 0 1 0 1 nucleoplasm 1 0.500231643808096 1 0.999536712383808 hm5C_site_32479 DeepMRMD:1;iRNA_m5C:0.999536712383808 32480 chr3 124351510 124351510 1 + C T SARC 124351528 + 124351508 124351548 41 GCCTGGGGATGAAACAACCCCTCAGGGAGACAGCGCTGATG GCTTGGGGATGAAACAACCCCTCAGGGAGACAGCGCTGATG < 41bp 1 0.368469754795835 1 0.162541657686234 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124351528 chr3:124351510 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_32489 0 0 1 0 1 nucleoplasm 1 0.500231643920976 1 0.999536712158047 hm5C_site_32480 DeepMRMD:1;iRNA_m5C:0.999536712158047 32481 chr4 517561 517561 1 + C T SARC 517553 + 517533 517573 41 GACAAAGGCCACGGAAGCCCCTCTACCTCCGAAGTGCTCAG GACAAAGGCCACGGAAGCCCCTCTACCTTCGAAGTGCTCAG < 41bp 1 0.642330721972817 1 0.880416750907898 experiment 0.715338556054367 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:517553 chr4:517561 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_32490 0 0 1 0 0 Nucleus 1 0.500231643921092 0.239166498184204 0.999536712157815 hm5C_site_32481 DeepMRMD:0.239166498184204;iRNA_m5C:0.999536712157815 32482 chr4 186231899 186231899 1 + C T SARC 186231908 + 186231888 186231928 41 GAATCCGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAG GAATCCGAATCTTGGGAGGCCCTGCCTATGACCAGCAAGAG < 41bp 1 0.0674849819429303 1 0.415303081274033 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX25 ENSG00000109762 CDS Human protein_coding chr4:186231908 chr4:186231899 synonymous SNV . 0 12 hm5C_associated_SNPs_32491 0 0 1 0 1 Endoplasmic reticulum 1 0.500205588420962 1 0.999588823158076 hm5C_site_32482 DeepMRMD:1;iRNA_m5C:0.999588823158076 32483 chr5 54654445 54654445 1 + G A SARC 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGTCTGGTCGTGCTGGAAGAAGAGGAATG < 41bp 1 0.205301999365429 1 0.15134185552597 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654445 synonymous SNV . 0 32 hm5C_associated_SNPs_32492 0 0 1 0 2 Nucleus 1 0.500230420660024 1 0.999539158679953 hm5C_site_32483 DeepMRMD:1;iRNA_m5C:0.999539158679953 32484 chr5 151183530 151183530 1 + C T SARC 151183550 + 151183530 151183570 41 CGCCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGG TGCCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGG < 41bp 1 0.346609898291754 1 0.483795493841171 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control G3BP1 ENSG00000145907 CDS Human protein_coding chr5:151183550 chr5:151183530 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_32493 0 0 1 0 1 Cytosol 1 0.500231509967615 1 0.999536980064771 hm5C_site_32484 DeepMRMD:1;iRNA_m5C:0.999536980064771 32485 chr7 76110035 76110035 1 + C T SARC 76110024 + 76110004 76110044 41 GCCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGC GCCCACAGCATCCCCTTGGGCCAGGCAGACCTCTCGCTGGC < 41bp 1 0.45935856087181 1 0.309232473373413 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110024 chr7:76110035 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_32494 0 0 0 0 1 Nucleus 1 0.500231643764459 1 0.999536712471082 hm5C_site_32485 DeepMRMD:1;iRNA_m5C:0.999536712471082 32486 chr7 76110035 76110035 1 + C T SARC 76110025 + 76110005 76110045 41 CCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCC CCCACAGCATCCCCTTGGGCCAGGCAGACCTCTCGCTGGCC < 41bp 1 0.311743150945145 1 0.646361768245697 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110025 chr7:76110035 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_32495 0 0 0 0 1 Nucleus 1 0.500231643921092 0.707276463508606 0.999536712157815 hm5C_site_32486 DeepMRMD:0.707276463508606;iRNA_m5C:0.999536712157815 32487 chr7 76110035 76110035 1 + C T SARC 76110029 + 76110009 76110049 41 CAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCCCCTT CAGCATCCCCTTGGGCCAGGCAGACCTCTCGCTGGCCCCTT < 41bp 1 0.258265819501302 1 0.740117907524109 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110029 chr7:76110035 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_32496 0 0 0 0 1 Nucleus 1 0.500231643921093 0.519764184951782 0.999536712157813 hm5C_site_32487 DeepMRMD:0.519764184951782;iRNA_m5C:0.999536712157813 32488 chr8 33355983 33355983 1 + G A SARC 33355999 + 33355979 33356019 41 TGAAGATCAGGATGGTAAATCCTCCAGTGAGGAGGAGGAAG TGAAAATCAGGATGGTAAATCCTCCAGTGAGGAGGAGGAAG < 41bp 1 0.117929669033383 1 0.0943751633167267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAK16 ENSG00000198042 CDS Human protein_coding chr8:33355999 chr8:33355983 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_32497 0 0 1 0 1 Cytosol 1 0.500231643881334 1 0.999536712237332 hm5C_site_32488 DeepMRMD:1;iRNA_m5C:0.999536712237332 32489 chr9 135919222 135919222 1 + C T SARC 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTCCGGCCCGAGAAGGAGGCCTTTTTCTACCAGGAGCTGCC < 41bp 1 0.0441574133000113 1 0.0312131643295288 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919222 nonsynonymous SNV 0.996 2 28 hm5C_associated_SNPs_32498 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_32489 DeepMRMD:1;iRNA_m5C:0.999536712157814 32490 chr11 65826321 65826321 1 + C T SARC 65826306 + 65826286 65826326 41 TCCTCCTCTTGACAGAAAAACCGGAAGCGTAGGAACCGAAA TCCTCCTCTTGACAGAAAAACCGGAAGCGTAGGAATCGAAA < 41bp 1 0.550502508386256 1 0.398898124694824 experiment 0.898994983227488 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826306 chr11:65826321 synonymous SNV . 0 36 hm5C_associated_SNPs_32499 0 0 1 0 1 Nucleus 1 0.500231643921144 1 0.999536712157712 hm5C_site_32490 DeepMRMD:1;iRNA_m5C:0.999536712157712 32491 chr11 93912979 93912979 1 + C T SARC 93912995 + 93912975 93913015 41 GATCCTGAGAAACGACAGCACCGTGCCCGATCAGTTTCAGT GATCTTGAGAAACGACAGCACCGTGCCCGATCAGTTTCAGT < 41bp 1 0.15177817098314 1 0.147653013467789 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PANX1 ENSG00000110218 CDS Human protein_coding chr11:93912995 chr11:93912979 synonymous SNV . 0 5 hm5C_associated_SNPs_32500 0 0 0 0 0 Endoplasmic reticulum 1 0.50023163301067 1 0.999536733978661 hm5C_site_32491 DeepMRMD:1;iRNA_m5C:0.999536733978661 32492 chr12 56361650 56361650 1 + G T SARC 56361667 + 56361647 56361687 41 TGAGGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGC TGATGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGC < 41bp 1 0.0429928844622199 1 0.193522095680237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361667 chr12:56361650 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_32501 0 0 1 0 2 Ribosome 1 0.500231644007653 1 0.999536711984693 hm5C_site_32492 DeepMRMD:1;iRNA_m5C:0.999536711984693 32493 chr12 56361650 56361650 1 + G T SARC 56361668 + 56361648 56361688 41 GAGGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGCT GATGGTGTGCCCAGTACTGCCATCCGAGAGATCTCTCTGCT < 41bp 1 0.27325485745414 1 0.119551211595535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361668 chr12:56361650 nonsynonymous SNV 0.997 4 3 hm5C_associated_SNPs_32502 0 0 1 0 2 Ribosome 1 0.500231660942596 1 0.999536678114808 hm5C_site_32493 DeepMRMD:1;iRNA_m5C:0.999536678114808 32494 chr13 42773788 42773788 1 + G A SARC 42773796 + 42773776 42773816 41 TTAATAATAAAAGAGAGGAGCACCCTGAAAAATGCAGGTAA TTAATAATAAAAAAGAGGAGCACCCTGAAAAATGCAGGTAA < 41bp 1 0.0814025416883977 1 0.172528654336929 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKH ENSG00000102780 CDS Human protein_coding chr13:42773796 chr13:42773788 nonsynonymous SNV 0.999 4 13 hm5C_associated_SNPs_32503 0 0 1 0 2 chromatin 1 0.500231643921165 1 0.999536712157671 hm5C_site_32494 DeepMRMD:1;iRNA_m5C:0.999536712157671 32495 chr13 42773788 42773788 1 + G A SARC 42773800 + 42773780 42773820 41 TAATAAAAGAGAGGAGCACCCTGAAAAATGCAGGTAATTTT TAATAAAAAAGAGGAGCACCCTGAAAAATGCAGGTAATTTT < 41bp 1 0.389578277143485 1 0.745263814926147 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKH ENSG00000102780 CDS Human protein_coding chr13:42773800 chr13:42773788 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_32504 0 0 1 0 2 chromatin 1 0.500231643920343 0.509472370147706 0.999536712159313 hm5C_site_32495 DeepMRMD:0.509472370147706;iRNA_m5C:0.999536712159313 32496 chr14 73406981 73406981 1 + C T SARC 73406995 + 73406975 73407015 41 TTGCTCCCTGGACATAACAACTGCAACCCCCTGACGAAAGA TTGCTCTCTGGACATAACAACTGCAACCCCCTGACGAAAGA < 41bp 1 0.684401743749867 1 0.335794001817703 experiment 0.631196512500267 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73406995 chr14:73406981 nonsynonymous SNV 0.993 1 7 hm5C_associated_SNPs_32505 0 0 1 0 2 chromatin 1 0.500231640371274 1 0.999536719257452 hm5C_site_32496 DeepMRMD:1;iRNA_m5C:0.999536719257452 32497 chr16 11133720 11133720 1 + C A SARC 11133722 + 11133702 11133742 41 CATCAGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACT CATCAGGATCATGAACAAAGCTGCCCAGCCAGGTGCCCACT < 41bp 1 0.315216561550839 1 0.0166054666042328 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133722 chr16:11133720 nonsynonymous SNV 0.994 0 19 hm5C_associated_SNPs_32506 0 0 1 0 1 Cytosol 1 0.500231643870886 1 0.999536712258228 hm5C_site_32497 DeepMRMD:1;iRNA_m5C:0.999536712258228 32498 chr16 11133720 11133720 1 + C A SARC 11133726 + 11133706 11133746 41 AGGATCATGAACAACGCTGCCCAGCCAGGTGCCCACTTGGG AGGATCATGAACAAAGCTGCCCAGCCAGGTGCCCACTTGGG < 41bp 1 0.0720379504914897 1 0.0511912405490875 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133726 chr16:11133720 nonsynonymous SNV 0.994 0 15 hm5C_associated_SNPs_32507 0 0 1 0 1 Cytosol 1 0.500231643923209 1 0.999536712153582 hm5C_site_32498 DeepMRMD:1;iRNA_m5C:0.999536712153582 32499 chr16 11133720 11133720 1 + C A SARC 11133730 + 11133710 11133750 41 TCATGAACAACGCTGCCCAGCCAGGTGCCCACTTGGGGTGT TCATGAACAAAGCTGCCCAGCCAGGTGCCCACTTGGGGTGT < 41bp 1 0.269874322523266 1 0.356685549020767 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11133730 chr16:11133720 nonsynonymous SNV 0.994 0 11 hm5C_associated_SNPs_32508 0 0 1 0 1 Cytosol 1 0.500231644247303 1 0.999536711505394 hm5C_site_32499 DeepMRMD:1;iRNA_m5C:0.999536711505394 32500 chr16 27761019 27761019 1 + G T SARC 27761012 + 27760992 27761032 41 GTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACG GTGCCTTCGACCGCTCCCACCGGGGACTCATCTCCAACACG < 41bp 1 0.515670940987312 1 0.919642210006714 experiment 0.968658118025376 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27761012 chr16:27761019 nonsynonymous SNV 0.710 4 28 hm5C_associated_SNPs_32509 0 0 0 0 0 Nucleus 1 0.500231644068927 0.160715579986572 0.999536711862145 hm5C_site_32500 DeepMRMD:0.160715579986572;iRNA_m5C:0.999536711862145 32501 chr16 28844425 28844425 1 + C T SARC 28844423 + 28844403 28844443 41 GAACAGCCTGGATCCTTTTCCTCCCCGGATCTTAAAGGAGG GAACAGCCTGGATCCTTTTCCTTCCCGGATCTTAAAGGAGG < 41bp 1 0.0897582347849724 1 0.115086168050766 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28844423 chr16:28844425 nonsynonymous SNV 0.990 0 23 hm5C_associated_SNPs_32510 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32501 DeepMRMD:1;iRNA_m5C:0.999536712157815 32502 chr16 57714230 57714230 1 + G A SARC 57714235 + 57714215 57714255 41 GAGGTCAGACCTGAGGGGACCGTGTGCTGCTGTGACCACCT GAGGTCAGACCTGAGAGGACCGTGTGCTGCTGTGACCACCT < 41bp 1 0.352224755615334 1 0.0831769704818726 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714235 chr16:57714230 nonsynonymous SNV 0.003 0 16 hm5C_associated_SNPs_32511 0 0 0 0 2 Nucleus 1 0.500231643985954 1 0.999536712028092 hm5C_site_32502 DeepMRMD:1;iRNA_m5C:0.999536712028092 32503 chr19 39013745 39013745 1 + C T SARC 39013755 + 39013735 39013775 41 ATCTACTGGTCCAAGTCCCACGTGAGTGCCCACCCCAACCG ATCTACTGGTTCAAGTCCCACGTGAGTGCCCACCCCAACCG < 41bp 1 0.397007589137362 1 0.509905993938446 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RYR1 ENSG00000196218 CDS Human protein_coding chr19:39013755 chr19:39013745 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_32512 0 0 0 0 2 chromatin 1 0.500324800189094 0.980188012123108 0.999350399621813 hm5C_site_32503 DeepMRMD:0.980188012123108;iRNA_m5C:0.999350399621813 32504 chr19 49376799 49376799 1 + C T SARC 49376803 + 49376783 49376823 41 TGAAAACCAGCAGTTCCCTTCCTGAAGCCTGGGGACTTTTG TGAAAACCAGCAGTTCTCTTCCTGAAGCCTGGGGACTTTTG < 41bp 1 0.218116796395228 1 0.0712926983833313 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49376803 chr19:49376799 synonymous SNV . 0 17 hm5C_associated_SNPs_32513 0 0 1 0 0 Cytosol 1 0.500231643921875 1 0.99953671215625 hm5C_site_32504 DeepMRMD:1;iRNA_m5C:0.99953671215625 32505 chr19 49469165 49469165 1 + G A SARC 49469156 + 49469136 49469176 41 ACCAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGGTA ACCAGCGTGGCGGCCGCGCTCTCTTCCAGAACATCAAGGTA < 41bp 1 0.386825318342082 1 0.154728889465332 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469156 chr19:49469165 nonsynonymous SNV 0.740 2 30 hm5C_associated_SNPs_32514 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32505 DeepMRMD:1;iRNA_m5C:0.999536712157815 32506 chr19 50912129 50912129 1 + C T SARC 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACGCTTCTTCGGCCCGGGACTG < 41bp 1 0.241250348841866 1 0.0305946469306946 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912129 synonymous SNV . 0 25 hm5C_associated_SNPs_32515 2 0 1 0 2 Nucleus 1 0.500231643933523 1 0.999536712132953 hm5C_site_32506 DeepMRMD:1;iRNA_m5C:0.999536712132953 not specified not specified 32507 chr19 55817697 55817697 1 + C T SARC 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC GTTTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC < 41bp 1 0.138685955101275 1 0.188266813755035 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817697 synonymous SNV . 0 3 hm5C_associated_SNPs_32516 0 0 0 0 1 chromatin 1 0.500231643967776 1 0.999536712064447 hm5C_site_32507 DeepMRMD:1;iRNA_m5C:0.999536712064447 32508 chr19 55898033 55898033 1 + T G SARC 55898017 + 55897997 55898037 41 GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGGGTCG < 41bp 1 0.555459801037031 1 0.383931577205658 experiment 0.889080397925939 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898017 chr19:55898033 synonymous SNV . 0 37 hm5C_associated_SNPs_32517 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32508 DeepMRMD:1;iRNA_m5C:0.999536712157815 32509 chr19 7584581 7584581 1 + C T SARC 7584583 + 7584563 7584603 41 CAGCCCGCCCCGGCCCTTCTCCTGCCCGGATTGCGGGCGAG CAGCCCGCCCCGGCCCTTTTCCTGCCCGGATTGCGGGCGAG < 41bp 1 0.208595428207206 1 0.41133576631546 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF358 ENSG00000198816 CDS Human protein_coding chr19:7584583 chr19:7584581 synonymous SNV . 0 19 hm5C_associated_SNPs_32519 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32509 DeepMRMD:1;iRNA_m5C:0.999536712157815 32510 chr19 7584581 7584581 1 + C T SARC 7584584 + 7584564 7584604 41 AGCCCGCCCCGGCCCTTCTCCTGCCCGGATTGCGGGCGAGC AGCCCGCCCCGGCCCTTTTCCTGCCCGGATTGCGGGCGAGC < 41bp 1 0.476052486690882 1 0.0847403407096863 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF358 ENSG00000198816 CDS Human protein_coding chr19:7584584 chr19:7584581 synonymous SNV . 0 18 hm5C_associated_SNPs_32520 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32510 DeepMRMD:1;iRNA_m5C:0.999536712157815 32511 chr2 120124578 120124578 1 + G T SARC 120124570 + 120124550 120124590 41 GCCAGTGCAATCTGGGCGATCGCTTCCTGGTCCTCGCCTCC GCCAGTGCAATCTGGGCGATCGCTTCCTTGTCCTCGCCTCC < 41bp 1 0.228288181579873 1 0.488007009029388 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DBI ENSG00000155368 UTR5 Human protein_coding chr2:120124570 chr2:120124578 . . 0 29 hm5C_associated_SNPs_32521 0 0 1 0 2 Ribosome 1 0.500231644283064 1 0.999536711433872 hm5C_site_32511 DeepMRMD:1;iRNA_m5C:0.999536711433872 32512 chr22 50857777 50857777 1 + G T SARC 50857784 + 50857764 50857804 41 TGTGTGTCCAGCAGGCAGGACTGTGTGGAGCAGCTTCTGAA TGTGTGTCCAGCATGCAGGACTGTGTGGAGCAGCTTCTGAA < 41bp 1 0.244600124004147 1 0.024797797203064 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP6R2;PPP6R2 ENSG00000100239;ENSG00000100239 exonic;splicing Human other chr22:50857784 chr22:50857777 nonsynonymous SNV 0.999 2 14 hm5C_associated_SNPs_32522 0 0 1 0 1 unknown 1 0.500230895566053 1 0.999538208867895 hm5C_site_32512 DeepMRMD:1;iRNA_m5C:0.999538208867895 32513 chr22 50857777 50857777 1 + G T SARC 50857797 + 50857777 50857817 41 GGCAGGACTGTGTGGAGCAGCTTCTGAAGAACATGTTTGAT TGCAGGACTGTGTGGAGCAGCTTCTGAAGAACATGTTTGAT < 41bp 1 0.146034993719683 1 0.148570507764816 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP6R2;PPP6R2 ENSG00000100239;ENSG00000100239 exonic;splicing Human other chr22:50857797 chr22:50857777 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_32523 0 0 1 0 1 unknown 1 0.50023165863265 1 0.999536682734699 hm5C_site_32513 DeepMRMD:1;iRNA_m5C:0.999536682734699 32514 chr1 36315805 36315805 1 + C A SARC 36315787 + 36315767 36315807 41 AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACCAT AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACAAT < 41bp 1 0.300668407486228 1 0.162241101264954 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO4 ENSG00000134698 CDS Human protein_coding chr1:36315787 chr1:36315805 synonymous SNV . 0 39 hm5C_associated_SNPs_32524 0 0 1 0 2 Nucleus 1 0.500231637512166 1 0.999536724975668 hm5C_site_32514 DeepMRMD:1;iRNA_m5C:0.999536724975668 32515 chr8 121468857 121468857 1 + G T SARC 121468848 + 121468828 121468868 41 ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTCA ATGTTGTATCTTTAGAAGATCTCAGAAATTTTATTGACTCA < 41bp 1 0.34023491602868 1 0.0929602682590485 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTBP ENSG00000172167 CDS Human protein_coding chr8:121468848 chr8:121468857 nonsynonymous SNV 0.994 0 30 hm5C_associated_SNPs_32525 0 0 1 0 2 membrane 1 0.50023164392134 1 0.999536712157321 hm5C_site_32515 DeepMRMD:1;iRNA_m5C:0.999536712157321 32516 chr9 139975182 139975182 1 + C T SARC 139975202 + 139975182 139975222 41 CCCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCC TCCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCC < 41bp 1 0.0792216012507189 1 0.59931355714798 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975202 chr9:139975182 nonsynonymous SNV 0.950 4 1 hm5C_associated_SNPs_32526 0 0 1 0 1 Ribosome 1 0.500231644035052 0.80137288570404 0.999536711929896 hm5C_site_32516 DeepMRMD:0.80137288570404;iRNA_m5C:0.999536711929896 32517 chrX 40450494 40450494 1 + T C SARC 40450488 + 40450468 40450508 41 GTGCTTTTCAATGTTTAGGACCTTTCTTGGCCAGGACTCGC GTGCTTTTCAATGTTTAGGACCTTTCCTGGCCAGGACTCGC < 41bp 1 0.0200589404626907 1 0.0158659815788269 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40450488 chrX:40450494 synonymous SNV . 0 27 hm5C_associated_SNPs_32528 0 0 1 0 1 Ribosome 1 0.500231727159337 1 0.999536545681325 hm5C_site_32517 DeepMRMD:1;iRNA_m5C:0.999536545681325 32518 chr3 49728609 49728609 1 + A G SARC 49728615 + 49728595 49728635 41 AAGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCA AAGGATGGCATCCAGGGGGGCCGGCATGTCTTTCTCCCGCA < 41bp 1 0.15461507781196 1 0.258670032024384 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49728615 chr3:49728609 nonsynonymous SNV 0.992 1 15 hm5C_associated_SNPs_32531 0 0 1 0 2 Nucleus 1 0.500231643879756 1 0.999536712240488 hm5C_site_32518 DeepMRMD:1;iRNA_m5C:0.999536712240488 32519 chr3 49728609 49728609 1 + A G SARC 49728616 + 49728596 49728636 41 AGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCAA AGGATGGCATCCAGGGGGGCCGGCATGTCTTTCTCCCGCAA < 41bp 1 0.621668992732931 1 0.498040288686752 experiment 0.756662014534138 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49728616 chr3:49728609 nonsynonymous SNV 0.992 1 14 hm5C_associated_SNPs_32532 0 0 1 0 2 Nucleus 1 0.500231642892768 1 0.999536714214463 hm5C_site_32519 DeepMRMD:1;iRNA_m5C:0.999536714214463 32520 chr1 86048585 86048585 1 + C T SARC 86048568 + 86048548 86048588 41 CACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCCGCT CACGCCCCAGCTGACCAGGACTGTGAAGATGCGGTTCTGCT < 41bp 1 0.171690251245232 1 0.0331593453884125 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048568 chr1:86048585 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_32533 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_32520 DeepMRMD:1;iRNA_m5C:0.999536712157816 32521 chr1 86048585 86048585 1 + C T SARC 86048579 + 86048559 86048599 41 TGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGG TGACCAGGACTGTGAAGATGCGGTTCTGCTGCGAAGATGGG < 41bp 1 0.294860266312011 1 0.110654711723328 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048579 chr1:86048585 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_32534 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921131 1 0.999536712157739 hm5C_site_32521 DeepMRMD:1;iRNA_m5C:0.999536712157739 32522 chr1 86048585 86048585 1 + C T SARC 86048584 + 86048564 86048604 41 AGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGAC AGGACTGTGAAGATGCGGTTCTGCTGCGAAGATGGGGAGAC < 41bp 1 0.633631152177436 1 0.155374199151993 experiment 0.732737695645128 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048584 chr1:86048585 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_32535 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_32522 DeepMRMD:1;iRNA_m5C:0.999536712157815 32523 chr5 10258269 10258269 1 + G A SARC 10258272 + 10258252 10258292 41 AGATTGCTGTGAATGCCGTCCTCACTGTAGCAGATATGGAG AGATTGCTGTGAATGCCATCCTCACTGTAGCAGATATGGAG < 41bp 1 0.345633179874825 1 0.492688089609146 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10258272 chr5:10258269 nonsynonymous SNV 0.969 1 18 hm5C_associated_SNPs_32538 0 0 1 0 0 Cytosol 1 0.500231630433393 1 0.999536739133213 hm5C_site_32523 DeepMRMD:1;iRNA_m5C:0.999536739133213 32524 chr5 10258269 10258269 1 + G A SARC 10258282 + 10258262 10258302 41 GAATGCCGTCCTCACTGTAGCAGATATGGAGCGGAGAGACG GAATGCCATCCTCACTGTAGCAGATATGGAGCGGAGAGACG < 41bp 1 0.356046795638737 1 0.331967651844025 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CCT5 ENSG00000150753 CDS Human protein_coding chr5:10258282 chr5:10258269 nonsynonymous SNV 0.969 1 8 hm5C_associated_SNPs_32540 0 0 1 0 0 Cytosol 1 0.500231649024459 1 0.999536701951082 hm5C_site_32524 DeepMRMD:1;iRNA_m5C:0.999536701951082 32525 chr6 41566596 41566596 1 + C T SARC 41566581 + 41566561 41566601 41 GCAGAGGAAGACAGGCAGCCCGGGCCTCCCCTGGGCGCCCC GCAGAGGAAGACAGGCAGCCCGGGCCTCCCCTGGGTGCCCC < 41bp 1 0.630400828806152 1 0.761353254318237 experiment 0.739198342387696 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41566581 chr6:41566596 synonymous SNV . 0 36 hm5C_associated_SNPs_32541 0 0 0 0 0 Nucleus 1 0.500231643921092 0.477293491363526 0.999536712157816 hm5C_site_32525 DeepMRMD:0.477293491363526;iRNA_m5C:0.999536712157816 32526 chr6 41566596 41566596 1 + C T SARC 41566589 + 41566569 41566609 41 AGACAGGCAGCCCGGGCCTCCCCTGGGCGCCCCTAACCCCA AGACAGGCAGCCCGGGCCTCCCCTGGGTGCCCCTAACCCCA < 41bp 1 0.261083865056663 1 0.315185546875 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41566589 chr6:41566596 synonymous SNV . 0 28 hm5C_associated_SNPs_32542 0 0 0 0 0 Nucleus 1 0.50023164392177 1 0.999536712156461 hm5C_site_32526 DeepMRMD:1;iRNA_m5C:0.999536712156461 32527 chr12 94072703 94072703 1 + C A SARC 94072701 + 94072681 94072721 41 TCAATGCTCAAACCACAGGCCTCCGGAAAACAATGCTCCTG TCAATGCTCAAACCACAGGCCTACGGAAAACAATGCTCCTG < 41bp 1 0.412072558068465 1 0.32093346118927 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRADD ENSG00000169372 CDS Human protein_coding chr12:94072701 chr12:94072703 synonymous SNV . 0 23 hm5C_associated_SNPs_32543 0 0 1 0 0 Ribosome 1 0.500231643904897 1 0.999536712190207 hm5C_site_32527 DeepMRMD:1;iRNA_m5C:0.999536712190207 32528 chr16 81077298 81077298 1 + C T SARC 81077278 + 81077258 81077298 41 AGTGAACTTTGGTAAAAGTCCATCTAATCCTTTACAAGAAC AGTGAACTTTGGTAAAAGTCCATCTAATCCTTTACAAGAAT < 41bp 1 0.14011013463392 1 0.0987206101417542 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81077278 chr16:81077298 synonymous SNV . 0 41 hm5C_associated_SNPs_32544 0 0 1 0 0 Cytosol 1 0.500231653570062 1 0.999536692859876 hm5C_site_32528 DeepMRMD:1;iRNA_m5C:0.999536692859876 32529 chr19 48685819 48685819 1 + C T SARC 48685809 + 48685789 48685829 41 GCCAGCTGACCCACTCACACCCGGCCTGCCCGCTGGAGTTC GCCAGCTGACCCACTCACACCCGGCCTGCCTGCTGGAGTTC < 41bp 1 0.432676088637638 1 0.248880386352539 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C19orf68 ENSG00000185453 CDS Human protein_coding chr19:48685809 chr19:48685819 nonsynonymous SNV 0.988 3 31 hm5C_associated_SNPs_32545 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644058286 1 0.999536711883429 hm5C_site_32529 DeepMRMD:1;iRNA_m5C:0.999536711883429 32530 chr19 48685819 48685819 1 + C T SARC 48685810 + 48685790 48685830 41 CCAGCTGACCCACTCACACCCGGCCTGCCCGCTGGAGTTCG CCAGCTGACCCACTCACACCCGGCCTGCCTGCTGGAGTTCG < 41bp 1 0.546132998357602 1 0.191729694604874 experiment 0.907734003284795 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control C19orf68 ENSG00000185453 CDS Human protein_coding chr19:48685810 chr19:48685819 nonsynonymous SNV 0.988 3 30 hm5C_associated_SNPs_32546 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643910474 1 0.999536712179051 hm5C_site_32530 DeepMRMD:1;iRNA_m5C:0.999536712179051 32531 chr1 183086567 183086567 1 + C T SARC 183086575 + 183086555 183086595 41 TCCTCGGTACTTCATTGCTCCTGGTAAGTAAGGCTAGAAAG TCCTCGGTACTTTATTGCTCCTGGTAAGTAAGGCTAGAAAG < 41bp 1 0.318510399932609 1 0.118433237075806 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086575 chr1:183086567 synonymous SNV . 0 13 hm5C_associated_SNPs_32547 0 0 1 0 1 Ribosome 1 0.500231643610082 1 0.999536712779836 hm5C_site_32531 DeepMRMD:1;iRNA_m5C:0.999536712779836 32532 chr4 1806225 1806225 1 + C T SARC 1806242 + 1806222 1806262 41 TCTCCCGCTTCCCGCTCAAGCGACAGGTAACAGAAAGTAGA TCTTCCGCTTCCCGCTCAAGCGACAGGTAACAGAAAGTAGA < 41bp 1 0.59157062224326 1 0.742889583110809 experiment 0.816858755513479 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1806242 chr4:1806225 nonsynonymous SNV 0.990 5 4 hm5C_associated_SNPs_32548 0 0 0 0 1 Ribosome 1 0.500231643755717 0.514220833778382 0.999536712488565 hm5C_site_32532 DeepMRMD:0.514220833778382;iRNA_m5C:0.999536712488565 32533 chr6 30692042 30692042 1 + G A SARC 30692022 + 30692002 30692042 41 TGTTCCGCCGGAAGGCCTTCCTCCACTGGTACACAGGCGAG TGTTCCGCCGGAAGGCCTTCCTCCACTGGTACACAGGCGAA < 41bp 1 0.637961610931896 1 0.98313844203949 experiment 0.724076778136208 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBB ENSG00000196230 CDS Human protein_coding chr6:30692022 chr6:30692042 synonymous SNV . 0 41 hm5C_associated_SNPs_32549 0 0 1 0 0 Cytosol 1 0.500231643921092 0.0337231159210201 0.999536712157815 hm5C_site_32533 DeepMRMD:0.0337231159210201;iRNA_m5C:0.999536712157815 32534 chr14 61997257 61997257 1 + G A SARC 61997276 + 61997256 61997296 41 TGATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA TAATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA < 41bp 1 0.0960250499013799 1 0.0896862149238586 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997276 chr14:61997257 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_32550 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_32534 DeepMRMD:1;iRNA_m5C:0.999536712157816 32535 chr12 56505265 56505265 1 + C A SARC 56505263 + 56505243 56505283 41 TTCTTCCTGTTTTCCAGGCCCTCCTCCAGAGTTCTGCAAGT TTCTTCCTGTTTTCCAGGCCCTACTCCAGAGTTCTGCAAGT < 41bp 1 0.129173382845662 1 0.0849402546882629 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56505263 chr12:56505265 synonymous SNV . 0 23 hm5C_associated_SNPs_32552 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32535 DeepMRMD:1;iRNA_m5C:0.999536712157815 32536 chr14 58698793 58698793 1 + G T SARC 58698787 + 58698767 58698807 41 TTTCTTTTTAATAACAGTGTCCGATAGACACCAGGAAGCAA TTTCTTTTTAATAACAGTGTCCGATATACACCAGGAAGCAA < 41bp 1 0.157142155503915 1 0.106687933206558 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58698787 chr14:58698793 nonsynonymous SNV 0.996 5 27 hm5C_associated_SNPs_32553 0 0 1 0 0 Ribosome 1 0.500231643955574 1 0.999536712088851 hm5C_site_32536 DeepMRMD:1;iRNA_m5C:0.999536712088851 32537 chr22 42280865 42280865 1 + C A SARC 42280873 + 42280853 42280893 41 TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT TCCTGCAGGATCAGCCTGTTCCGATGTACACATGGCGTTGT < 41bp 1 0.289534088737209 1 0.20135885477066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42280873 chr22:42280865 synonymous SNV . 0 13 hm5C_associated_SNPs_32554 0 0 1 0 1 Ribosome 1 0.500231645633232 1 0.999536708733537 hm5C_site_32537 DeepMRMD:1;iRNA_m5C:0.999536708733537 32538 chr11 10772978 10772978 1 + G C SARC 10772973 + 10772953 10772993 41 CCCCATCATGTCGCGGGGCTCCATCGAGATTCCCCTCCGGG CCCCATCATGTCGCGGGGCTCCATCCAGATTCCCCTCCGGG < 41bp 1 0.0826967242442558 1 0.101043879985809 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10772973 chr11:10772978 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_32555 0 0 1 0 1 Cytosol 1 0.500231643911575 1 0.999536712176851 hm5C_site_32538 DeepMRMD:1;iRNA_m5C:0.999536712176851 32539 chr8 26223880 26223880 1 + G A SARC 26223862 + 26223842 26223882 41 CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCA CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTACA < 41bp 1 0.290833097376098 1 0.300659894943237 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223862 chr8:26223880 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_32556 0 0 1 0 2 Cytosol 1 0.500231643909042 1 0.999536712181915 hm5C_site_32539 DeepMRMD:1;iRNA_m5C:0.999536712181915 32540 chr8 26223880 26223880 1 + G A SARC 26223864 + 26223844 26223884 41 TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCATA TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTACATA < 41bp 1 0.481524040823145 1 0.119374543428421 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223864 chr8:26223880 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_32557 0 0 1 0 2 Cytosol 1 0.500232351331857 1 0.999535297336285 hm5C_site_32540 DeepMRMD:1;iRNA_m5C:0.999535297336285 32541 chr8 26223880 26223880 1 + G A SARC 26223878 + 26223858 26223898 41 TGTTCACTGTATGAAAATGACTGCATATTTGACAAATTTGA TGTTCACTGTATGAAAATGACTACATATTTGACAAATTTGA < 41bp 1 0.388888702081493 1 0.0968121588230133 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223878 chr8:26223880 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_32558 0 0 1 0 2 Cytosol 1 0.500231643990838 1 0.999536712018323 hm5C_site_32541 DeepMRMD:1;iRNA_m5C:0.999536712018323 32542 chr8 26223880 26223880 1 + G A SARC 26223881 + 26223861 26223901 41 TCACTGTATGAAAATGACTGCATATTTGACAAATTTGAATG TCACTGTATGAAAATGACTACATATTTGACAAATTTGAATG < 41bp 1 0.082855303060721 1 0.0730753242969513 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223881 chr8:26223880 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_32559 0 0 1 0 2 Cytosol 1 0.500231577889277 1 0.999536844221445 hm5C_site_32542 DeepMRMD:1;iRNA_m5C:0.999536844221445 32543 chr8 26223880 26223880 1 + G A SARC 26223890 + 26223870 26223910 41 GAAAATGACTGCATATTTGACAAATTTGAATGTTGTTGGAA GAAAATGACTACATATTTGACAAATTTGAATGTTGTTGGAA < 41bp 1 0.205038543085504 1 0.175263941287994 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223890 chr8:26223880 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_32560 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32543 DeepMRMD:1;iRNA_m5C:0.999536712157815 32544 chr2 216197214 216197214 1 + A G SARC 216197204 + 216197184 216197224 41 TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCC TTTAGGTATTCCAGCCGCTGCCTCTTTCAAGCATGTCAGCC < 41bp 1 0.0438342924599657 1 0.135543435811996 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197204 chr2:216197214 synonymous SNV . 0 31 hm5C_associated_SNPs_32561 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32544 DeepMRMD:1;iRNA_m5C:0.999536712157815 32545 chr2 216197214 216197214 1 + A G SARC 216197205 + 216197185 216197225 41 TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCCC TTAGGTATTCCAGCCGCTGCCTCTTTCAAGCATGTCAGCCC < 41bp 1 0.368200932959668 1 0.24529692530632 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197205 chr2:216197214 synonymous SNV . 0 30 hm5C_associated_SNPs_32562 0 0 1 0 1 chromatin 1 0.500232032487022 1 0.999535935025955 hm5C_site_32545 DeepMRMD:1;iRNA_m5C:0.999535935025955 32546 chr3 15253704 15253704 1 + G A SARC 15253701 + 15253681 15253721 41 CTGAGTATCTGGAAAGAGTTCAAGCTCTACATTCAGCAGGT CTGAGTATCTGGAAAGAGTTCAAACTCTACATTCAGCAGGT < 41bp 1 0.281308341019294 1 0.298398673534393 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15253701 chr3:15253704 nonsynonymous SNV 0.309 1 24 hm5C_associated_SNPs_32563 0 0 1 0 2 Cytosol 1 0.500230927681385 1 0.999538144637229 hm5C_site_32546 DeepMRMD:1;iRNA_m5C:0.999538144637229 32547 chr9 4585514 4585514 1 + G T SARC 4585509 + 4585489 4585529 41 TTATGTCAATGGAGGCTTTGCAGTAGACAAGTCTGACACCA TTATGTCAATGGAGGCTTTGCAGTATACAAGTCTGACACCA < 41bp 1 0.682169896132298 1 0.679562091827393 experiment 0.635660207735403 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4585509 chr9:4585514 nonsynonymous SNV 0.989 4 26 hm5C_associated_SNPs_32564 0 0 1 0 0 chromatin 1 0.500231643921027 0.640875816345214 0.999536712157946 hm5C_site_32547 DeepMRMD:0.640875816345214;iRNA_m5C:0.999536712157946 32548 chr19 45489826 45489826 1 + G T SARC 45489821 + 45489801 45489841 41 TGAAGGGCAGTGTGCCCCCTCCCCTGGATCAATGTAAGCTC TGAAGGGCAGTGTGCCCCCTCCCCTTGATCAATGTAAGCTC < 41bp 1 0.278332692054894 1 0.0901916027069092 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45489821 chr19:45489826 synonymous SNV . 0 26 hm5C_associated_SNPs_32565 0 0 1 0 1 Cytosol 1 0.500231643926925 1 0.99953671214615 hm5C_site_32548 DeepMRMD:1;iRNA_m5C:0.99953671214615 32549 chr7 128483309 128483309 1 + C T SARC 128483319 + 128483299 128483339 41 CCTTCCACATCAAGGTGGACCCATCCCACGATGCCAGCAAA CCTTCCACATTAAGGTGGACCCATCCCACGATGCCAGCAAA < 41bp 1 0.011658779420513 1 0.174770295619965 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128483319 chr7:128483309 synonymous SNV . 0 11 hm5C_associated_SNPs_32566 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32549 DeepMRMD:1;iRNA_m5C:0.999536712157815 32550 chr19 10370387 10370387 1 + A T SARC 10370393 + 10370373 10370413 41 CTCTGGCAGGACTCACGTTACAGACCCCTCTACCCCTTCAG CTCTGGCAGGACTCTCGTTACAGACCCCTCTACCCCTTCAG < 41bp 1 0.520649213767264 1 0.4022556245327 experiment 0.958701572465473 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10370393 chr19:10370387 synonymous SNV . 0 15 hm5C_associated_SNPs_32567 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32550 DeepMRMD:1;iRNA_m5C:0.999536712157815 32551 chr3 50220202 50220202 1 + G A SARC 50220185 + 50220165 50220205 41 AGAGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCGGGC AGAGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCAGGC < 41bp 1 0.369535803862221 1 0.829647600650787 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220185 chr3:50220202 nonsynonymous SNV 0.981 4 38 hm5C_associated_SNPs_32568 0 0 0 0 1 Endoplasmic reticulum 1 0.500231521060871 0.340704798698426 0.999536957878258 hm5C_site_32551 DeepMRMD:0.340704798698426;iRNA_m5C:0.999536957878258 32552 chrX 49853394 49853394 1 + G T SARC 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CCTCTTTATCCCTAGCATGGCTGTTGGTTCTATAGCAGGTC < 41bp 1 0.15270543090533 1 0.140689492225647 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853394 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_32569 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32552 DeepMRMD:1;iRNA_m5C:0.999536712157815 32553 chr2 236817475 236817475 1 + T A SARC 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCA < 41bp 1 0.118858150569543 1 0.0614896416664124 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817475 nonsynonymous SNV 0.317 3 41 hm5C_associated_SNPs_32570 0 0 1 0 2 Nucleus 1 0.500231640310159 1 0.999536719379682 hm5C_site_32553 DeepMRMD:1;iRNA_m5C:0.999536719379682 32554 chr5 167627052 167627052 1 + G T SARC 167627037 + 167627017 167627057 41 CTGTCGAGGGGCATCTCTTCCAGAAGTCATTCCAGGCTTCT CTGTCGAGGGGCATCTCTTCCAGAAGTCATTCCAGTCTTCT < 41bp 1 0.531175191844907 1 0.517154455184937 experiment 0.937649616310186 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TENM2 ENSG00000145934 CDS Human protein_coding chr5:167627037 chr5:167627052 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_32571 0 0 0 0 1 exosome 1 0.500231643919799 0.965691089630126 0.999536712160402 hm5C_site_32554 DeepMRMD:0.965691089630126;iRNA_m5C:0.999536712160402 32555 chr16 3712046 3712046 1 + C T SARC 3712045 - 3712025 3712065 41 CCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG CCTGCGCATGCAGCAGCTGACCAAGACCCAGGAGGAGCGCG < 41bp 1 0.312466713658543 1 0.13383287191391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712045 chr16:3712046 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_32572 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643891208 1 0.999536712217585 hm5C_site_32555 DeepMRMD:1;iRNA_m5C:0.999536712217585 32556 chr16 3712046 3712046 1 + C T SARC 3712049 - 3712029 3712069 41 ACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAG ACTTCCTGCGCATGCAGCAGCTGACCAAGACCCAGGAGGAG < 41bp 1 0.288057358585044 1 0.566983222961426 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712049 chr16:3712046 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_32573 0 0 1 0 2 Endoplasmic reticulum 1 0.500231703885502 0.866033554077148 0.999536592228995 hm5C_site_32556 DeepMRMD:0.866033554077148;iRNA_m5C:0.999536592228995 32557 chr16 3712046 3712046 1 + C T SARC 3712061 - 3712041 3712081 41 GGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAG GGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGACCAAG < 41bp 1 0.52088434256696 1 0.132582157850266 experiment 0.958231314866081 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712061 chr16:3712046 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_32574 0 0 1 0 2 Endoplasmic reticulum 1 0.500231681672019 1 0.999536636655961 hm5C_site_32557 DeepMRMD:1;iRNA_m5C:0.999536636655961 32558 chr17 79418811 79418811 1 + C T SARC 79418808 + 79418788 79418828 41 CACTGCCCCAGCGCAGCCGCCCACAGCCAACCCCTGCAGCG CACTGCCCCAGCGCAGCCGCCCATAGCCAACCCCTGCAGCG < 41bp 1 0.0782903352812453 1 0.0551517903804779 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BAHCC1 ENSG00000171282 CDS Human other chr17:79418808 chr17:79418811 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_32575 0 0 1 0 1 chromatin 1 0.500231643969264 1 0.999536712061472 hm5C_site_32558 DeepMRMD:1;iRNA_m5C:0.999536712061472 32559 chr1 156705649 156705649 1 + A G SARC 156705645 + 156705625 156705665 41 CAGCCTGGCTCTACTGCTTGCCCCACTGGTGGAGACGCTTA CAGCCTGGCTCTACTGCTTGCCCCGCTGGTGGAGACGCTTA < 41bp 1 0.31678198165749 1 0.0695361793041229 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156705645 chr1:156705649 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_32576 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_32559 DeepMRMD:1;iRNA_m5C:0.999536712157814 32560 chr7 21470337 21470337 1 + C T SARC 21470330 + 21470310 21470350 41 GATTGCTCCTGTGGCTGTTGCTGGTGCCCCAATAACTTTGA GATTGCTCCTGTGGCTGTTGCTGGTGCTCCAATAACTTTGA < 41bp 1 0.629475814626031 1 0.540878891944885 experiment 0.741048370747939 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SP4 ENSG00000105866 CDS Human protein_coding chr7:21470330 chr7:21470337 synonymous SNV . 0 28 hm5C_associated_SNPs_32577 0 0 0 0 0 chromatin 1 0.500161671468632 0.91824221611023 0.999676657062736 hm5C_site_32560 DeepMRMD:0.91824221611023;iRNA_m5C:0.999676657062736 32561 chr19 10561315 10561315 1 + G T SARC 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAATGCCA < 41bp 1 0.0323530453777607 1 0.100975424051285 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561315 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_32578 0 0 0 0 2 chromatin 1 0.500231643921094 1 0.999536712157812 hm5C_site_32561 DeepMRMD:1;iRNA_m5C:0.999536712157812 32562 chr5 132400701 132400701 1 + G A SARC 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCATTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC < 41bp 1 0.477196698306158 1 0.426067739725113 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400701 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_32579 0 0 1 0 2 Cytosol 1 0.500231630215795 1 0.99953673956841 hm5C_site_32562 DeepMRMD:1;iRNA_m5C:0.99953673956841 32563 chr1 145761266 145761266 1 + T C SARC 145761280 + 145761260 145761300 41 CTTCTCTGGAAGTCTCAAGTCCACCAGATACTACAGAGGAA CTTCTCCGGAAGTCTCAAGTCCACCAGATACTACAGAGGAA < 41bp 1 0.0686379314747854 1 0.134644657373428 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDZK1 ENSG00000174827 CDS Human protein_coding chr1:145761280 chr1:145761266 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_32580 0 0 1 0 1 Nucleus 1 0.500231649842026 1 0.999536700315948 hm5C_site_32563 DeepMRMD:1;iRNA_m5C:0.999536700315948 32564 chr16 1545430 1545430 1 + A T SARC 1545447 + 1545427 1545467 41 CGCAGTGTCGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC CGCTGTGTCGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC < 41bp 1 0.464974180487139 1 0.145891696214676 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545447 chr16:1545430 nonsynonymous SNV 0.058 1 4 hm5C_associated_SNPs_32581 0 0 0 0 1 Cytosol 1 0.500231643921289 1 0.999536712157422 hm5C_site_32564 DeepMRMD:1;iRNA_m5C:0.999536712157422 32565 chr19 5691405 5691405 1 + G C SARC 5691402 + 5691382 5691422 41 GCTTTGCCCCGTACGAGCGGCGCGCCATGGAGTTACTGAAG GCTTTGCCCCGTACGAGCGGCGCCCCATGGAGTTACTGAAG < 41bp 1 0.178643090608668 1 0.221743047237396 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691402 chr19:5691405 nonsynonymous SNV 0.277 0 24 hm5C_associated_SNPs_32582 0 0 1 0 0 Ribosome 1 0.50023359062494 1 0.99953281875012 hm5C_site_32565 DeepMRMD:1;iRNA_m5C:0.99953281875012 32566 chr19 5691405 5691405 1 + G C SARC 5691407 + 5691387 5691427 41 GCCCCGTACGAGCGGCGCGCCATGGAGTTACTGAAGGTCTC GCCCCGTACGAGCGGCGCCCCATGGAGTTACTGAAGGTCTC < 41bp 1 0.476386184013171 1 0.458378493785858 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691407 chr19:5691405 nonsynonymous SNV 0.277 0 19 hm5C_associated_SNPs_32583 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32566 DeepMRMD:1;iRNA_m5C:0.999536712157815 32567 chrX 12837656 12837656 1 + G T SARC 12837674 + 12837654 12837694 41 GTGGAATTTGCTTTGATCCACAAAGAGAGGAAGAAGGCGAA GTTGAATTTGCTTTGATCCACAAAGAGAGGAAGAAGGCGAA < 41bp 1 0.533029995297261 1 0.509193956851959 experiment 0.933940009405478 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12837674 chrX:12837656 synonymous SNV . 0 3 hm5C_associated_SNPs_32584 0 0 1 0 0 Ribosome 1 0.500231643921012 0.981612086296082 0.999536712157976 hm5C_site_32567 DeepMRMD:0.981612086296082;iRNA_m5C:0.999536712157976 32568 chr1 39926399 39926399 1 + G T SARC 39926397 + 39926377 39926417 41 CTCGAGTGATGGATTTCTTCCGGCGCATTGATAAGGACCAG CTCGAGTGATGGATTTCTTCCGTCGCATTGATAAGGACCAG < 41bp 1 0.108755352879679 1 0.690378069877625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39926397 chr1:39926399 synonymous SNV . 0 23 hm5C_associated_SNPs_32585 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643948658 0.61924386024475 0.999536712102684 hm5C_site_32568 DeepMRMD:0.61924386024475;iRNA_m5C:0.999536712102684 32569 chr1 46871975 46871975 1 + G T SARC 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC CGATCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC < 41bp 1 0.395288903204995 1 0.0709720253944397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46871975 nonsynonymous SNV 0.915 1 4 hm5C_associated_SNPs_32586 0 0 0 0 2 Ribosome 1 0.500230497414723 1 0.999539005170553 hm5C_site_32569 DeepMRMD:1;iRNA_m5C:0.999539005170553 32570 chr1 153744921 153744921 1 + G T SARC 153744915 + 153744895 153744935 41 CTGACCAACACCAAGCAGAACTGTATGCCTTCCACCCTCGG CTGACCAACACCAAGCAGAACTGTATTCCTTCCACCCTCGG < 41bp 1 0.521532316101869 1 0.0480728149414062 experiment 0.956935367796262 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153744915 chr1:153744921 nonsynonymous SNV 0.626 0 27 hm5C_associated_SNPs_32588 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32570 DeepMRMD:1;iRNA_m5C:0.999536712157815 32571 chr1 228463589 228463589 1 + G T SARC 228463603 + 228463583 228463623 41 GCCCTGGCGCCGGGAAAGAACGTGGAGATCCACGCCGAGGG GCCCTGTCGCCGGGAAAGAACGTGGAGATCCACGCCGAGGG < 41bp 1 0.241009494028236 1 0.723792731761932 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228463603 chr1:228463589 nonsynonymous SNV 0.002 0 7 hm5C_associated_SNPs_32589 0 0 0 0 0 Ribosome 1 0.500231644482398 0.552414536476136 0.999536711035205 hm5C_site_32571 DeepMRMD:0.552414536476136;iRNA_m5C:0.999536711035205 32572 chr2 10925152 10925152 1 + G T SARC 10925150 - 10925130 10925170 41 CATTTTTCCCTAAGGGAGCTCTCTTTTGGGCGTGGCTCCAC CATTTTTCCCTAAGGGAGATCTCTTTTGGGCGTGGCTCCAC < 41bp 1 0.274277981703178 1 0.40240278840065 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDIA6 ENSG00000143870 CDS Human protein_coding chr2:10925150 chr2:10925152 nonsynonymous SNV 0.735 3 19 hm5C_associated_SNPs_32590 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32572 DeepMRMD:1;iRNA_m5C:0.999536712157815 32573 chr2 60987381 60987381 1 + G T SARC 60987390 + 60987370 60987410 41 AATTAATTGACGCCATGAAACCATTTGGAGTGTTTGAAGAT AATTAATTGACTCCATGAAACCATTTGGAGTGTTTGAAGAT < 41bp 1 0.0620679993638661 1 0.0518468618392944 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLG ENSG00000115421 CDS Human protein_coding chr2:60987390 chr2:60987381 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_32591 0 0 1 0 1 chromatin 1 0.500231643921442 1 0.999536712157116 hm5C_site_32573 DeepMRMD:1;iRNA_m5C:0.999536712157116 32574 chr2 85770884 85770884 1 + C A SARC 85770875 + 85770855 85770895 41 ACAGCTTCCCATGGGAAGTGCCCAAAAAGCTTAAATATTGA ACAGCTTCCCATGGGAAGTGCCCAAAAAGATTAAATATTGA < 41bp 1 0.172501752857182 1 0.195756584405899 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770875 chr2:85770884 nonsynonymous SNV 1.000 3 30 hm5C_associated_SNPs_32592 0 0 1 0 1 Cytosol 1 0.500231643921087 1 0.999536712157826 hm5C_site_32574 DeepMRMD:1;iRNA_m5C:0.999536712157826 32575 chr2 204078296 204078296 1 + G T SARC 204078310 + 204078290 204078330 41 GTTTGTGTCACCAAAGAATACAGCCATATTCTTGTAGGTTT GTTTGTTTCACCAAAGAATACAGCCATATTCTTGTAGGTTT < 41bp 1 0.233137169437171 1 0.0738774836063385 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204078310 chr2:204078296 nonsynonymous SNV 0.977 3 7 hm5C_associated_SNPs_32593 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_32575 DeepMRMD:1;iRNA_m5C:0.999536712157816 32576 chr3 169953108 169953108 1 + G T SARC 169953106 + 169953086 169953126 41 TGTGTTCTTTTGACAACGAACAGCTCTTCACCATGAAATGG TGTGTTCTTTTGACAACGAACATCTCTTCACCATGAAATGG < 41bp 1 0.181563875728564 1 0.0524255633354187 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169953106 chr3:169953108 nonsynonymous SNV 0.756 1 23 hm5C_associated_SNPs_32594 0 0 1 0 2 Ribosome 1 0.500230867718339 1 0.999538264563322 hm5C_site_32576 DeepMRMD:1;iRNA_m5C:0.999538264563322 32577 chr5 7885851 7885851 1 + G T SARC 7885832 + 7885812 7885852 41 AGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGC AGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCATC < 41bp 1 0.432658379811458 1 0.192095011472702 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885832 chr5:7885851 nonsynonymous SNV 0.894 1 40 hm5C_associated_SNPs_32595 0 0 1 0 1 Nucleus 1 0.500231650409741 1 0.999536699180518 hm5C_site_32577 DeepMRMD:1;iRNA_m5C:0.999536699180518 32578 chr5 7885851 7885851 1 + G T SARC 7885835 + 7885815 7885855 41 ATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG ATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCATCGTG < 41bp 1 0.219253747365502 1 0.200909823179245 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885835 chr5:7885851 nonsynonymous SNV 0.894 1 37 hm5C_associated_SNPs_32596 0 0 1 0 1 Nucleus 1 0.500231643926044 1 0.999536712147912 hm5C_site_32578 DeepMRMD:1;iRNA_m5C:0.999536712147912 32579 chr5 7885851 7885851 1 + G T SARC 7885861 + 7885841 7885881 41 GATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGT GATGCCTTCATCGTGATCTGCCCTAACAGTGATTCTGAGGT < 41bp 1 0.232597181017691 1 0.0593677163124084 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885861 chr5:7885851 nonsynonymous SNV 0.894 1 11 hm5C_associated_SNPs_32598 0 0 1 0 1 Nucleus 1 0.500231643915173 1 0.999536712169653 hm5C_site_32579 DeepMRMD:1;iRNA_m5C:0.999536712169653 32580 chr5 7885851 7885851 1 + G T SARC 7885862 + 7885842 7885882 41 ATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTA ATGCCTTCATCGTGATCTGCCCTAACAGTGATTCTGAGGTA < 41bp 1 0.201536167684009 1 0.0889912843704224 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885862 chr5:7885851 nonsynonymous SNV 0.894 1 10 hm5C_associated_SNPs_32599 0 0 1 0 1 Nucleus 1 0.500231643921044 1 0.999536712157912 hm5C_site_32580 DeepMRMD:1;iRNA_m5C:0.999536712157912 32581 chr5 7885851 7885851 1 + G T SARC 7885863 + 7885843 7885883 41 TGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTAC TGCCTTCATCGTGATCTGCCCTAACAGTGATTCTGAGGTAC < 41bp 1 0.252153593674194 1 0.109326422214508 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885863 chr5:7885851 nonsynonymous SNV 0.894 1 9 hm5C_associated_SNPs_32600 0 0 1 0 1 Nucleus 1 0.500231643308243 1 0.999536713383514 hm5C_site_32581 DeepMRMD:1;iRNA_m5C:0.999536713383514 32582 chr5 134099710 134099710 1 + G T SARC 134099691 + 134099671 134099711 41 GTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGATAGA GTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGATATA < 41bp 1 0.381656507614509 1 0.514952600002289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099691 chr5:134099710 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_32601 0 0 1 0 1 Cytosol 1 0.500231643921092 0.970094799995422 0.999536712157815 hm5C_site_32582 DeepMRMD:0.970094799995422;iRNA_m5C:0.999536712157815 32583 chr5 139906578 139906578 1 + G T SARC 139906560 + 139906540 139906580 41 CTTGTCAACCAGCTACAAGACAGTGTCATTGCCATTAAGCT CTTGTCAACCAGCTACAAGACAGTGTCATTGCCATTAATCT < 41bp 1 0.179553744767993 1 0.115045964717865 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139906560 chr5:139906578 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_32602 0 0 1 0 2 unknown 1 0.500231643951469 1 0.999536712097062 hm5C_site_32583 DeepMRMD:1;iRNA_m5C:0.999536712097062 32584 chr5 169015487 169015487 1 + G T SARC 169015481 + 169015461 169015501 41 AAGAGGCTGAAGAAGAGCGACTAAAAGCTGCACAGTATGGT AAGAGGCTGAAGAAGAGCGACTAAAATCTGCACAGTATGGT < 41bp 1 0.457335886963328 1 0.187601447105408 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015481 chr5:169015487 nonsynonymous SNV 0.712 1 27 hm5C_associated_SNPs_32603 0 0 1 0 3 chromatin 1 0.500231643924907 1 0.999536712150186 hm5C_site_32584 DeepMRMD:1;iRNA_m5C:0.999536712150186 32585 chr6 137219369 137219369 1 + G T SARC 137219355 + 137219335 137219375 41 GAGTTTACTTGTGGTTTAGACTTCAGTCTTCAGAGCCCCAC GAGTTTACTTGTGGTTTAGACTTCAGTCTTCAGATCCCCAC < 41bp 1 0.641108310908588 1 0.180858075618744 experiment 0.717783378182823 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PEX7 ENSG00000112357 CDS Human protein_coding chr6:137219355 chr6:137219369 nonsynonymous SNV 0.996 2 35 hm5C_associated_SNPs_32604 0 0 0 0 2 Ribosome 1 0.500231650351348 1 0.999536699297304 hm5C_site_32585 DeepMRMD:1;iRNA_m5C:0.999536699297304 32586 chr6 168314953 168314953 1 + G T SARC 168314938 + 168314918 168314958 41 AGCAAGACCGAGACCTTAGTCGGATCACACTGGATGCTCAA AGCAAGACCGAGACCTTAGTCGGATCACACTGGATTCTCAA < 41bp 1 0.33081206782099 1 0.879453897476196 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168314938 chr6:168314953 nonsynonymous SNV 0.978 3 36 hm5C_associated_SNPs_32605 0 0 1 0 1 unknown 1 0.500231643917596 0.241092205047608 0.999536712164807 hm5C_site_32586 DeepMRMD:0.241092205047608;iRNA_m5C:0.999536712164807 32587 chr7 139094370 139094370 1 + G T SARC 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGATA < 41bp 1 0.532453139785238 1 0.369998097419739 experiment 0.935093720429523 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094370 nonsynonymous SNV 0.981 4 40 hm5C_associated_SNPs_32606 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157817 hm5C_site_32587 DeepMRMD:1;iRNA_m5C:0.999536712157817 32588 chr7 139094370 139094370 1 + G T SARC 139094357 + 139094337 139094377 41 GAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGA GAAACCAGGAACGGCTGAAACGAAGAGAAGAGATAGAGAGA < 41bp 1 0.647061734533577 1 0.666119039058685 experiment 0.705876530932845 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094357 chr7:139094370 nonsynonymous SNV 0.981 4 34 hm5C_associated_SNPs_32607 0 0 1 0 2 unknown 1 0.500231643921092 0.66776192188263 0.999536712157816 hm5C_site_32588 DeepMRMD:0.66776192188263;iRNA_m5C:0.999536712157816 32589 chr7 142458486 142458486 1 + C T SARC 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCT < 41bp 1 0.133569697577188 1 0.166608780622482 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458486 synonymous SNV . 0 41 hm5C_associated_SNPs_32608 1 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32589 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 32590 chr7 142458486 142458486 1 + C T SARC 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAA < 41bp 1 0.116431970023122 1 0.135868728160858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458486 synonymous SNV . 0 37 hm5C_associated_SNPs_32609 1 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32590 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 32591 chr7 142458486 142458486 1 + C T SARC 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAAT < 41bp 1 0.0903853908967509 1 0.115727484226227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458486 synonymous SNV . 0 36 hm5C_associated_SNPs_32610 1 0 0 0 3 Cytosol 1 0.500231643919856 1 0.999536712160288 hm5C_site_32591 DeepMRMD:1;iRNA_m5C:0.999536712160288 Hereditary pancreatitis Hereditary pancreatitis 32592 chr7 142458486 142458486 1 + C T SARC 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATT < 41bp 1 0.0151666406224258 1 0.102131992578506 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458486 synonymous SNV . 0 35 hm5C_associated_SNPs_32611 1 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32592 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 32593 chr7 142458486 142458486 1 + C T SARC 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATTC < 41bp 1 0.146782996738929 1 0.0518117249011993 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458486 synonymous SNV . 0 34 hm5C_associated_SNPs_32612 1 0 0 0 3 Cytosol 1 0.500231643921157 1 0.999536712157686 hm5C_site_32593 DeepMRMD:1;iRNA_m5C:0.999536712157686 Hereditary pancreatitis Hereditary pancreatitis 32594 chr7 142458486 142458486 1 + C T SARC 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATTCTGG < 41bp 1 0.175416732437467 1 0.32041323184967 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458486 synonymous SNV . 0 31 hm5C_associated_SNPs_32613 1 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32594 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 32595 chr7 142458486 142458486 1 + C T SARC 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCTTGAATTCTGGC < 41bp 1 0.575763456277683 1 0.877609670162201 experiment 0.848473087444634 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458486 synonymous SNV . 0 30 hm5C_associated_SNPs_32614 1 0 0 0 3 Cytosol 1 0.500231643912632 0.244780659675598 0.999536712174736 hm5C_site_32595 DeepMRMD:0.244780659675598;iRNA_m5C:0.999536712174736 Hereditary pancreatitis Hereditary pancreatitis 32596 chr7 142458486 142458486 1 + C T SARC 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCTTGAATTCTGGCTACCACT < 41bp 1 0.0361163816749074 1 0.0498900413513184 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458486 synonymous SNV . 0 23 hm5C_associated_SNPs_32615 1 0 0 0 3 Cytosol 1 0.500231643921088 1 0.999536712157824 hm5C_site_32596 DeepMRMD:1;iRNA_m5C:0.999536712157824 Hereditary pancreatitis Hereditary pancreatitis 32597 chr7 142458486 142458486 1 + C T SARC 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCTTGAATTCTGGCTACCACTT < 41bp 1 0.561195335159784 1 0.192632526159286 experiment 0.877609329680433 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458486 synonymous SNV . 0 22 hm5C_associated_SNPs_32616 1 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32597 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 32598 chr7 142458486 142458486 1 + C T SARC 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0710248166349725 1 0.0493484139442444 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458486 synonymous SNV . 0 10 hm5C_associated_SNPs_32618 1 0 0 0 3 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_32598 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 32599 chr7 142458486 142458486 1 + C T SARC 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0633152660106615 1 0.0451627671718597 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458486 synonymous SNV . 0 7 hm5C_associated_SNPs_32619 1 0 0 0 3 Cytosol 1 0.500231644720108 1 0.999536710559785 hm5C_site_32599 DeepMRMD:1;iRNA_m5C:0.999536710559785 Hereditary pancreatitis Hereditary pancreatitis 32600 chr7 142458486 142458486 1 + C T SARC 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.205723480932329 1 0.390007704496384 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458486 synonymous SNV . 0 6 hm5C_associated_SNPs_32620 1 0 0 0 3 Cytosol 1 0.500334517595944 1 0.999330964808112 hm5C_site_32600 DeepMRMD:1;iRNA_m5C:0.999330964808112 Hereditary pancreatitis Hereditary pancreatitis 32601 chr7 142458486 142458486 1 + C T SARC 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCTTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.327383792856633 1 0.518207788467407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458486 synonymous SNV . 0 4 hm5C_associated_SNPs_32621 1 0 0 0 3 Cytosol 1 0.500232163574716 0.963584423065186 0.999535672850567 hm5C_site_32601 DeepMRMD:0.963584423065186;iRNA_m5C:0.999535672850567 Hereditary pancreatitis Hereditary pancreatitis 32602 chr7 142458486 142458486 1 + C T SARC 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA TTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.630160669295685 1 0.295745521783829 experiment 0.73967866140863 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458486 synonymous SNV . 0 1 hm5C_associated_SNPs_32622 1 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32602 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary pancreatitis Hereditary pancreatitis 32603 chr8 21851913 21851913 1 + G T SARC 21851912 + 21851892 21851932 41 GTAAGAGACCTGAGAGGGATCGCTTTCGCTTTCAATGCCAA GTAAGAGACCTGAGAGGGATCTCTTTCGCTTTCAATGCCAA < 41bp 1 0.212974221587595 1 0.134415149688721 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21851912 chr8:21851913 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_32623 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32603 DeepMRMD:1;iRNA_m5C:0.999536712157815 32604 chr8 26505239 26505239 1 + G T SARC 26505249 + 26505229 26505269 41 AGGCCGCATTGCTGTGGGATCCGATGCCGACCTGGTCATCT AGGCCGCATTTCTGTGGGATCCGATGCCGACCTGGTCATCT < 41bp 1 0.175808475509677 1 0.092258095741272 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26505249 chr8:26505239 nonsynonymous SNV 0.746 3 11 hm5C_associated_SNPs_32624 0 0 1 0 1 Nucleus 1 0.500231783211348 1 0.999536433577303 hm5C_site_32604 DeepMRMD:1;iRNA_m5C:0.999536433577303 32605 chr8 48885506 48885506 1 + G T SARC 48885502 + 48885482 48885522 41 ACCTGGTCGCACTGTACTACCAGAGCGAGGAGCAGGCAGAG ACCTGGTCGCACTGTACTACCAGATCGAGGAGCAGGCAGAG < 41bp 1 0.560570136029255 1 0.325370132923126 experiment 0.87885972794149 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48885502 chr8:48885506 nonsynonymous SNV 0.940 2 25 hm5C_associated_SNPs_32625 0 0 1 0 1 Cytosol 1 0.500231644689201 1 0.999536710621598 hm5C_site_32605 DeepMRMD:1;iRNA_m5C:0.999536710621598 32606 chr8 145138166 145138166 1 + G T SARC 145138162 + 145138142 145138182 41 TTTGCGGGCGGAGACCGTGCCCGGGCTTTTGCCCGGGACTT TTTGCGGGCGGAGACCGTGCCCGGTCTTTTGCCCGGGACTT < 41bp 1 0.490223418788333 1 0.296031981706619 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145138162 chr8:145138166 nonsynonymous SNV 0.016 0 25 hm5C_associated_SNPs_32626 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643919871 1 0.999536712160258 hm5C_site_32606 DeepMRMD:1;iRNA_m5C:0.999536712160258 32607 chr8 145138166 145138166 1 + G T SARC 145138163 + 145138143 145138183 41 TTGCGGGCGGAGACCGTGCCCGGGCTTTTGCCCGGGACTTC TTGCGGGCGGAGACCGTGCCCGGTCTTTTGCCCGGGACTTC < 41bp 1 0.467188530690702 1 0.603871643543243 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145138163 chr8:145138166 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_32627 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.792256712913514 0.999536712157815 hm5C_site_32607 DeepMRMD:0.792256712913514;iRNA_m5C:0.999536712157815 32608 chr9 101778337 101778337 1 + G T SARC 101778357 + 101778337 101778377 41 GCCCTCCCCCTGATGGGCCACCGCTGCCCCTGCCCACAGTG TCCCTCCCCCTGATGGGCCACCGCTGCCCCTGCCCACAGTG < 41bp 1 0.13476659867554 1 0.0883722305297852 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101778357 chr9:101778337 nonsynonymous SNV 0.002 2 1 hm5C_associated_SNPs_32628 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_32608 DeepMRMD:1;iRNA_m5C:0.999536712157815 32609 chr10 102716219 102716219 1 + G T SARC 102716213 + 102716193 102716233 41 ATTTGTTTTGCACAGAAACACTTTGTGCTACTCTGTGGGGC ATTTGTTTTGCACAGAAACACTTTGTTCTACTCTGTGGGGC < 41bp 1 0.142015420527989 1 0.107049852609634 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102716213 chr10:102716219 synonymous SNV . 0 27 hm5C_associated_SNPs_32629 0 0 1 0 2 Nucleus 1 0.500231764871921 1 0.999536470256158 hm5C_site_32609 DeepMRMD:1;iRNA_m5C:0.999536470256158 32610 chr10 103285835 103285835 1 + G T SARC 103285833 + 103285813 103285853 41 GGATGCCAAATCACTATGTGCTGCTGAACTTGTGTGCAAGG GGATGCCAAATCACTATGTGCTTCTGAACTTGTGTGCAAGG < 41bp 1 0.08719487831122 1 0.0503793060779572 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103285833 chr10:103285835 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_32630 0 0 1 0 1 chromatin 1 0.500231647475798 1 0.999536705048404 hm5C_site_32610 DeepMRMD:1;iRNA_m5C:0.999536705048404 32611 chr11 19955525 19955525 1 + G T SARC 19955508 + 19955488 19955528 41 ACCAGGAATGAAAAGCATGCCCGGGAAATCCCCAAGTGCCC ACCAGGAATGAAAAGCATGCCCGGGAAATCCCCAAGTTCCC < 41bp 1 0.251845562279177 1 0.293337762355804 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:19955508 chr11:19955525 nonsynonymous SNV 0.921 1 38 hm5C_associated_SNPs_32632 0 0 0 0 0 Nucleus 1 0.500231643920433 1 0.999536712159133 hm5C_site_32611 DeepMRMD:1;iRNA_m5C:0.999536712159133 32612 chr11 61631185 61631185 1 + G T SARC 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CATCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG < 41bp 1 0.0343439893107208 1 0.272130966186523 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631185 nonsynonymous SNV 0.820 1 3 hm5C_associated_SNPs_32633 0 0 1 0 2 Ribosome 1 0.500231933124068 1 0.999536133751864 hm5C_site_32612 DeepMRMD:1;iRNA_m5C:0.999536133751864 32613 chr11 64879504 64879504 1 + G T SARC 64879492 + 64879472 64879512 41 CGGCGGAGCGGAGACCATGGCCCCCACTCAGGGCCCCCGGG CGGCGGAGCGGAGACCATGGCCCCCACTCAGGTCCCCCGGG < 41bp 1 0.160699368597465 1 0.30298638343811 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM7SF2 ENSG00000149809 CDS Human protein_coding chr11:64879492 chr11:64879504 nonsynonymous SNV 0.004 0 33 hm5C_associated_SNPs_32634 0 0 0 0 1 Ribosome 1 0.500233015888239 1 0.999533968223522 hm5C_site_32613 DeepMRMD:1;iRNA_m5C:0.999533968223522 32614 chr11 66627138 66627138 1 + G T SARC 66627122 + 66627102 66627142 41 CTGCAGGATTGTCCCAGCCTCCAGCCACCACTTCCTGCTGA CTGCAGGATTGTCCCAGCCTCCAGCCACCACTTCCTTCTGA < 41bp 1 0.187641876659028 1 0.378136456012726 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627122 chr11:66627138 synonymous SNV . 0 37 hm5C_associated_SNPs_32635 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_32614 DeepMRMD:1;iRNA_m5C:0.999536712157816 32615 chr11 66627138 66627138 1 + G T SARC 66627129 + 66627109 66627149 41 ATTGTCCCAGCCTCCAGCCACCACTTCCTGCTGAAGCACCT ATTGTCCCAGCCTCCAGCCACCACTTCCTTCTGAAGCACCT < 41bp 1 0.0625968849283024 1 0.0596520602703094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627129 chr11:66627138 synonymous SNV . 0 30 hm5C_associated_SNPs_32636 0 0 1 0 1 Ribosome 1 0.500221103518579 1 0.999557792962843 hm5C_site_32615 DeepMRMD:1;iRNA_m5C:0.999557792962843 32616 chr11 74915453 74915453 1 + G T SARC 74915455 + 74915435 74915475 41 CTTTCCCCAGGTTCATCGGCCTCCAGTTCTTCTTCAAAACA CTTTCCCCAGGTTCATCGTCCTCCAGTTCTTCTTCAAAACA < 41bp 1 0.4244378236857 1 0.311415076255798 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74915455 chr11:74915453 nonsynonymous SNV 0.986 4 19 hm5C_associated_SNPs_32637 0 0 0 0 1 cytosol 1 0.500231643921027 1 0.999536712157945 hm5C_site_32616 DeepMRMD:1;iRNA_m5C:0.999536712157945 32617 chr11 76114925 76114925 1 + G T SARC 76114912 + 76114892 76114932 41 GGGCAGGAGAAGATGGATGTCACAGCTCAAGAAGCGAGAAC GGGCAGGAGAAGATGGATGTCACAGCTCAAGAATCGAGAAC < 41bp 1 0.542309697012298 1 0.224678069353104 experiment 0.915380605975405 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOC100506127 ENSG00000179240 CDS Human protein_coding chr11:76114912 chr11:76114925 nonsynonymous SNV 0.012 0 34 hm5C_associated_SNPs_32638 0 0 0 0 1 unknown 1 0.50023164392109 1 0.999536712157819 hm5C_site_32617 DeepMRMD:1;iRNA_m5C:0.999536712157819 32618 chr12 95888830 95888830 1 + G T SARC 95888833 + 95888813 95888853 41 CTCTCAATAATTGTGCTGCCCATTATACTCCCAATGCCGGT CTCTCAATAATTGTGCTTCCCATTATACTCCCAATGCCGGT < 41bp 1 0.399458325933214 1 0.104094535112381 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95888833 chr12:95888830 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_32639 0 0 1 0 2 Ribosome 1 0.500231642453786 1 0.999536715092428 hm5C_site_32618 DeepMRMD:1;iRNA_m5C:0.999536715092428 32619 chr12 117426522 117426522 1 + G T SARC 117426534 + 117426514 117426554 41 CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCC CAGTAGCCTCTGCTGGAGATCTGATGTACCTGCTCAAAGCC < 41bp 1 0.444754374695665 1 0.192826420068741 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426534 chr12:117426522 nonsynonymous SNV 0.885 0 9 hm5C_associated_SNPs_32640 0 0 0 0 1 Cytosol 1 0.500231643921077 1 0.999536712157846 hm5C_site_32619 DeepMRMD:1;iRNA_m5C:0.999536712157846 32620 chr13 52604955 52604955 1 + G T SARC 52604967 + 52604947 52604987 41 TGAGAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAG TGAGAAGCTCAACATCCACGCAGCAGCTCATCAGGTACAAG < 41bp 1 0.544529376804401 1 0.157406568527222 experiment 0.910941246391198 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604967 chr13:52604955 nonsynonymous SNV 0.925 2 9 hm5C_associated_SNPs_32641 0 0 1 0 0 nucleoplasm 1 0.500231203552827 1 0.999537592894345 hm5C_site_32620 DeepMRMD:1;iRNA_m5C:0.999537592894345 32621 chr13 52604955 52604955 1 + G T SARC 52604970 + 52604950 52604990 41 GAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAGTGC GAAGCTCAACATCCACGCAGCAGCTCATCAGGTACAAGTGC < 41bp 1 0.150659147862536 1 0.0705333650112152 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604970 chr13:52604955 nonsynonymous SNV 0.925 2 6 hm5C_associated_SNPs_32642 0 0 1 0 0 nucleoplasm 1 0.500231593825296 1 0.999536812349407 hm5C_site_32621 DeepMRMD:1;iRNA_m5C:0.999536812349407 32622 chr13 115091194 115091194 1 + G T SARC 115091186 + 115091166 115091206 41 AAGAAGCTCAAGAAAGACAACCAAGAGAGCTCAGACGCTGA AAGAAGCTCAAGAAAGACAACCAAGAGATCTCAGACGCTGA < 41bp 1 0.119707930454597 1 0.296466708183289 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115091186 chr13:115091194 nonsynonymous SNV 0.998 0 29 hm5C_associated_SNPs_32643 0 0 0 0 0 nucleus 1 0.500236893827446 1 0.999526212345108 hm5C_site_32622 DeepMRMD:1;iRNA_m5C:0.999526212345108 32623 chr15 89849342 89849342 1 + G T SARC 89849336 + 89849316 89849356 41 CATTTTTCCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC CATTTTTCCACGAGCTGGTGCAGACATCTCTGCCATCAGGC < 41bp 1 0.131389344344446 1 0.357886910438538 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89849336 chr15:89849342 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_32646 0 0 1 0 1 Nucleus 1 0.500231555618584 1 0.999536888762831 hm5C_site_32623 DeepMRMD:1;iRNA_m5C:0.999536888762831 32624 chr17 17698414 17698414 1 + G T SARC 17698433 + 17698413 17698453 41 TGCTCCAGACCCCACTACAGCAGCTTTTGACTGTTTCCCGG TTCTCCAGACCCCACTACAGCAGCTTTTGACTGTTTCCCGG < 41bp 1 0.373603632919662 1 0.20693176984787 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17698433 chr17:17698414 nonsynonymous SNV 0.014 0 2 hm5C_associated_SNPs_32647 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32624 DeepMRMD:1;iRNA_m5C:0.999536712157815 32625 chr17 54912550 54912550 1 + G T SARC 54912549 + 54912529 54912569 41 CACCACTGGATCCGGGGCAACGTGCCCCTGTGCAGTTACTG CACCACTGGATCCGGGGCAACTTGCCCCTGTGCAGTTACTG < 41bp 1 0.25560398093076 1 0.0718756318092346 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54912549 chr17:54912550 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_32649 0 0 1 0 1 Ribosome 1 0.500231648076065 1 0.999536703847871 hm5C_site_32625 DeepMRMD:1;iRNA_m5C:0.999536703847871 32626 chr17 73567052 73567052 1 + G T SARC 73567066 + 73567046 73567086 41 GCCAAGGCTGAGCGGCCAGGCCTCCAGAACATGGAGCTGGC GCCAAGTCTGAGCGGCCAGGCCTCCAGAACATGGAGCTGGC < 41bp 1 0.0702349503765326 1 0.396340906620026 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73567066 chr17:73567052 nonsynonymous SNV 0.011 0 7 hm5C_associated_SNPs_32650 0 0 1 0 1 Endoplasmic reticulum 1 0.500233622703702 1 0.999532754592595 hm5C_site_32626 DeepMRMD:1;iRNA_m5C:0.999532754592595 32627 chr17 80426696 80426696 1 + G T SARC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTTC < 41bp 1 0.53209412944471 1 0.43389105796814 experiment 0.935811741110579 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426696 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32652 0 0 1 11 2 Cytosol 1 0.500231690701362 1 0.999536618597275 hm5C_site_32627 DeepMRMD:1;iRNA_m5C:0.999536618597275 32628 chr19 4222720 4222720 1 + G T SARC 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCATCCGGCCGCCCTCGCCACC < 41bp 1 0.0953805942417203 1 0.0817050039768219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222720 nonsynonymous SNV 0.331 3 23 hm5C_associated_SNPs_32653 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32628 DeepMRMD:1;iRNA_m5C:0.999536712157815 32629 chr19 10941695 10941695 1 + G T SARC 10941683 + 10941663 10941703 41 CCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCG CCCTGCTGCGCCCAGCCGGCCCACCATTATCCTCCCAGCCG < 41bp 1 0.0705428488409982 1 0.0330395102500916 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941683 chr19:10941695 nonsynonymous SNV 0.988 4 33 hm5C_associated_SNPs_32654 0 0 1 0 2 Nucleus 1 0.50023164392111 1 0.999536712157781 hm5C_site_32629 DeepMRMD:1;iRNA_m5C:0.999536712157781 32630 chr19 10941695 10941695 1 + G T SARC 10941686 + 10941666 10941706 41 TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGC TGCTGCGCCCAGCCGGCCCACCATTATCCTCCCAGCCGAGC < 41bp 1 0.0494985293325003 1 0.0902315080165863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941686 chr19:10941695 nonsynonymous SNV 0.988 4 30 hm5C_associated_SNPs_32656 0 0 1 0 2 Nucleus 1 0.50023164400178 1 0.999536711996441 hm5C_site_32630 DeepMRMD:1;iRNA_m5C:0.999536711996441 32631 chr19 10941695 10941695 1 + G T SARC 10941687 + 10941667 10941707 41 GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCC GCTGCGCCCAGCCGGCCCACCATTATCCTCCCAGCCGAGCC < 41bp 1 0.233745378838239 1 0.0775275528430939 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941687 chr19:10941695 nonsynonymous SNV 0.988 4 29 hm5C_associated_SNPs_32657 0 0 1 0 2 Nucleus 1 0.50023164384378 1 0.99953671231244 hm5C_site_32631 DeepMRMD:1;iRNA_m5C:0.99953671231244 32632 chr19 11145703 11145703 1 + G T SARC 11145704 + 11145684 11145724 41 AGGACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG AGGACGACGCGGAGGTGGATCGGCTGACCTGTGAGGAGGAG < 41bp 1 0.577796548487717 1 0.507588028907776 experiment 0.844406903024565 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145704 chr19:11145703 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_32659 0 0 1 0 0 Nucleus 1 0.500231648238212 0.984823942184448 0.999536703523576 hm5C_site_32632 DeepMRMD:0.984823942184448;iRNA_m5C:0.999536703523576 32633 chr19 11145703 11145703 1 + G T SARC 11145707 + 11145687 11145727 41 ACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG ACGACGCGGAGGTGGATCGGCTGACCTGTGAGGAGGAGGAG < 41bp 1 0.292969541590901 1 0.31572437286377 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145707 chr19:11145703 nonsynonymous SNV 0.999 2 17 hm5C_associated_SNPs_32660 0 0 1 0 0 Nucleus 1 0.500231643919624 1 0.999536712160753 hm5C_site_32633 DeepMRMD:1;iRNA_m5C:0.999536712160753 32634 chr19 36212452 36212452 1 + G T SARC 36212461 + 36212441 36212481 41 CACAGACACAGGCTCAGCTACTGCAGCCCCTGCAGGCCTTG CACAGACACAGTCTCAGCTACTGCAGCCCCTGCAGGCCTTG < 41bp 1 0.375570494821546 1 0.364987730979919 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36212461 chr19:36212452 nonsynonymous SNV 0.900 1 12 hm5C_associated_SNPs_32661 0 0 1 0 0 chromatin 1 0.500246669115673 1 0.999506661768655 hm5C_site_32634 DeepMRMD:1;iRNA_m5C:0.999506661768655 32635 chr19 46026012 46026012 1 + G T SARC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAATCTGAGAGTGGTCGA < 41bp 1 0.634668625909604 1 0.286887258291245 experiment 0.730662748180791 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026012 nonsynonymous SNV 0.669 0 27 hm5C_associated_SNPs_32662 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_32635 DeepMRMD:1;iRNA_m5C:0.999536712157816 32636 chr19 46026012 46026012 1 + G T SARC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAATCTGAGAGTGGTCGAA < 41bp 1 0.336942117089532 1 0.0930121839046478 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026012 nonsynonymous SNV 0.669 0 26 hm5C_associated_SNPs_32663 0 0 1 0 3 Ribosome 1 0.500231647380088 1 0.999536705239825 hm5C_site_32636 DeepMRMD:1;iRNA_m5C:0.999536705239825 32637 chr19 46026012 46026012 1 + G T SARC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAATCTGAGAGTGGTCGAAG < 41bp 1 0.32352187518494 1 0.35785111784935 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026012 nonsynonymous SNV 0.669 0 25 hm5C_associated_SNPs_32664 0 0 1 0 3 Ribosome 1 0.500231644351317 1 0.999536711297365 hm5C_site_32637 DeepMRMD:1;iRNA_m5C:0.999536711297365 32638 chr19 49652930 49652930 1 + G T SARC 49652931 + 49652911 49652951 41 TCGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCC TCGTTCGGCTGCAGCGGGATCCCTGGGCTCTCCGGGGCTCC < 41bp 1 0.190820350182187 1 0.102026283740997 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652931 chr19:49652930 nonsynonymous SNV 0.997 0 20 hm5C_associated_SNPs_32665 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32638 DeepMRMD:1;iRNA_m5C:0.999536712157815 32639 chr19 49652930 49652930 1 + G T SARC 49652932 + 49652912 49652952 41 CGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCCC CGTTCGGCTGCAGCGGGATCCCTGGGCTCTCCGGGGCTCCC < 41bp 1 0.24431951993765 1 0.304368615150452 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652932 chr19:49652930 nonsynonymous SNV 0.997 0 19 hm5C_associated_SNPs_32666 0 0 1 0 1 Cytosol 1 0.500231638329672 1 0.999536723340656 hm5C_site_32639 DeepMRMD:1;iRNA_m5C:0.999536723340656 32640 chr19 49652930 49652930 1 + G T SARC 49652948 + 49652928 49652968 41 GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG GATCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG < 41bp 1 0.0959392732199028 1 0.140617072582245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652948 chr19:49652930 nonsynonymous SNV 0.997 0 3 hm5C_associated_SNPs_32667 0 0 1 0 1 Cytosol 1 0.500231643911941 1 0.999536712176117 hm5C_site_32640 DeepMRMD:1;iRNA_m5C:0.999536712176117 32641 chr19 49652930 49652930 1 + G T SARC 49652950 + 49652930 49652970 41 GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC TCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC < 41bp 1 0.052243082278915 1 0.0465338528156281 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652950 chr19:49652930 nonsynonymous SNV 0.997 0 1 hm5C_associated_SNPs_32668 0 0 1 0 1 Cytosol 1 0.500231644279044 1 0.999536711441911 hm5C_site_32641 DeepMRMD:1;iRNA_m5C:0.999536711441911 32642 chr20 19937397 19937397 1 + G T SARC 19937385 + 19937365 19937405 41 CGGCTCCTCCACACCCACCCCATATGGCTGCAGCTGAGTCT CGGCTCCTCCACACCCACCCCATATGGCTGCATCTGAGTCT < 41bp 1 0.172551804340483 1 0.160535246133804 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19937385 chr20:19937397 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_32669 0 0 0 0 1 Nucleus 1 0.500231643707934 1 0.999536712584133 hm5C_site_32642 DeepMRMD:1;iRNA_m5C:0.999536712584133 32643 chr20 39978514 39978514 1 + G T SARC 39978516 + 39978496 39978536 41 GAGTCCCACATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGT GAGTCCCACATGCAGTGGTCCTGGGGGAGGCTGCCTAAGGT < 41bp 1 0.684574918920317 1 0.693087577819824 experiment 0.630850162159366 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39978516 chr20:39978514 nonsynonymous SNV 1.000 0 19 hm5C_associated_SNPs_32670 0 0 1 0 1 Nucleus 1 0.500231643930905 0.613824844360352 0.99953671213819 hm5C_site_32643 DeepMRMD:0.613824844360352;iRNA_m5C:0.99953671213819 32644 chr22 39440166 39440166 1 + G T SARC 39440154 + 39440134 39440174 41 CCTTTGGCCAGTGCGCCCCACCACATGGGACAGCGCAGGTC CCTTTGGCCAGTGCGCCCCACCACATGGGACATCGCAGGTC < 41bp 1 0.410581970312874 1 0.180604875087738 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39440154 chr22:39440166 nonsynonymous SNV 0.007 0 33 hm5C_associated_SNPs_32671 0 0 0 0 1 Nucleus 1 0.500231644570019 1 0.999536710859962 hm5C_site_32644 DeepMRMD:1;iRNA_m5C:0.999536710859962 32645 chr22 51133381 51133381 1 + G T SARC 51133361 + 51133341 51133381 41 GACCCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCAG GACCCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCAT < 41bp 1 0.170023284773438 1 0.118022710084915 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51133361 chr22:51133381 nonsynonymous SNV . 0 41 hm5C_associated_SNPs_32672 0 0 0 0 1 cytosol 1 0.50023164391099 1 0.999536712178021 hm5C_site_32645 DeepMRMD:1;iRNA_m5C:0.999536712178021 32646 chr22 51133381 51133381 1 + G T SARC 51133362 + 51133342 51133382 41 ACCCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCAGC ACCCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCATC < 41bp 1 0.0379137626627282 1 0.0668432712554932 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51133362 chr22:51133381 nonsynonymous SNV . 0 40 hm5C_associated_SNPs_32673 0 0 0 0 1 cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_32646 DeepMRMD:1;iRNA_m5C:0.999536712157814 32647 chr22 51133381 51133381 1 + G T SARC 51133363 + 51133343 51133383 41 CCCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCAGCG CCCTCGCTGAGAAGCCTCCCCCACCAGCTGCTGCTCCATCG < 41bp 1 0.0604669710408026 1 0.125077664852142 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51133363 chr22:51133381 nonsynonymous SNV . 0 39 hm5C_associated_SNPs_32674 0 0 0 0 1 cytosol 1 0.500231643848749 1 0.999536712302501 hm5C_site_32647 DeepMRMD:1;iRNA_m5C:0.999536712302501 32648 chrX 17705971 17705971 1 + G T SARC 17705955 + 17705935 17705975 41 CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGATCTGC < 41bp 1 0.328115429122729 1 0.0334930717945099 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705955 chrX:17705971 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_32676 0 0 0 0 1 nucleus 1 0.500231643903679 1 0.999536712192641 hm5C_site_32648 DeepMRMD:1;iRNA_m5C:0.999536712192641 32649 chrX 106046128 106046128 1 + G T SARC 106046129 + 106046109 106046149 41 TTCTGAAAAATGCGCTGAAGCTGTGGCTGATGGAAAGGTCC TTCTGAAAAATGCGCTGAATCTGTGGCTGATGGAAAGGTCC < 41bp 1 0.631041200626138 1 0.312725216150284 experiment 0.737917598747723 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106046129 chrX:106046128 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_32679 0 0 1 0 1 exosome 1 0.500231648858878 1 0.999536702282244 hm5C_site_32649 DeepMRMD:1;iRNA_m5C:0.999536702282244 32650 chrX 107842029 107842029 1 + G T SARC 107842027 + 107842007 107842047 41 CCTATGGGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGG CCTATGGGTCCCCCTGGTTTCGTCCCTCCAGGCCCAGTAGG < 41bp 1 0.180603924684281 1 0.0939501821994781 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107842027 chrX:107842029 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_32680 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32650 DeepMRMD:1;iRNA_m5C:0.999536712157815 32651 chrX 153031713 153031713 1 + G T SARC 153031732 + 153031712 153031752 41 CGCGGCTGCCTGGCTCTTTCCCCCAGCTGCGGAGGGTTCCT CTCGGCTGCCTGGCTCTTTCCCCCAGCTGCGGAGGGTTCCT < 41bp 1 0.334310081496408 1 0.811307668685913 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153031732 chrX:153031713 synonymous SNV . 0 2 hm5C_associated_SNPs_32681 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643935221 0.377384662628174 0.999536712129558 hm5C_site_32651 DeepMRMD:0.377384662628174;iRNA_m5C:0.999536712129558 32652 chr1 16257991 16257991 1 + G T SARC 16257979 + 16257959 16257999 41 TTTTCCCAGGCAGAGAGCAACGTAGATCCAGAGCCTGACAG TTTTCCCAGGCAGAGAGCAACGTAGATCCAGATCCTGACAG < 41bp 1 0.261861443445508 1 0.11499285697937 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPEN ENSG00000065526 CDS Human protein_coding chr1:16257979 chr1:16257991 nonsynonymous SNV 0.005 0 33 hm5C_associated_SNPs_32682 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921097 1 0.999536712157807 hm5C_site_32652 DeepMRMD:1;iRNA_m5C:0.999536712157807 32653 chr1 89298797 89298797 1 + G T SARC 89298809 + 89298789 89298829 41 TGGGGCTAGCGAGAAAGATGCAGAGGATGTAAAAAAGCACC TGGGGCTATCGAGAAAGATGCAGAGGATGTAAAAAAGCACC < 41bp 1 0.503974746236145 1 0.753382086753845 experiment 0.99205050752771 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKN2 ENSG00000065243 CDS Human protein_coding chr1:89298809 chr1:89298797 nonsynonymous SNV 0.987 1 9 hm5C_associated_SNPs_32683 0 0 1 0 2 Nucleus 1 0.500231643943421 0.49323582649231 0.999536712113157 hm5C_site_32653 DeepMRMD:0.49323582649231;iRNA_m5C:0.999536712113157 32654 chr1 150483634 150483634 1 + G T SARC 150483635 + 150483615 150483655 41 TATTCCCGCTGCTGCCACTGCCGCAGCCACACAAACCGCCT TATTCCCGCTGCTGCCACTTCCGCAGCCACACAAACCGCCT < 41bp 1 0.664871016171498 1 0.77140885591507 experiment 0.670257967657005 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ECM1 ENSG00000143369 CDS Human protein_coding chr1:150483635 chr1:150483634 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_32684 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643446474 0.45718228816986 0.999536713107052 hm5C_site_32654 DeepMRMD:0.45718228816986;iRNA_m5C:0.999536713107052 32655 chr2 32689585 32689585 1 + G T SARC 32689581 + 32689561 32689601 41 TTTACTTCTTTTGCAGAAAGCAAAGCTGGAAGCCAAGTTAC TTTACTTCTTTTGCAGAAAGCAAATCTGGAAGCCAAGTTAC < 41bp 1 0.0767645363073865 1 0.129403412342072 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32689581 chr2:32689585 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_32685 0 0 1 0 1 Nucleus 1 0.500231643977743 1 0.999536712044513 hm5C_site_32655 DeepMRMD:1;iRNA_m5C:0.999536712044513 32656 chr2 55191167 55191167 1 + G T SARC 55191153 + 55191133 55191173 41 CAAGGTGAGCTTGGGCCATGCGGCCAGGTGTGCAGCCTACA CAAGGTGAGCTTGGGCCATGCGGCCAGGTGTGCATCCTACA < 41bp 1 0.239343152793858 1 0.330692410469055 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55191153 chr2:55191167 nonsynonymous SNV 0.994 1 35 hm5C_associated_SNPs_32686 0 0 0 0 1 cytosol 1 0.500231644735188 1 0.999536710529624 hm5C_site_32656 DeepMRMD:1;iRNA_m5C:0.999536710529624 32657 chr3 14487264 14487264 1 + G T SARC 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTTATTTTCCTGTTTGGGATCGGCCTGCCTGTGTTTTTCTT < 41bp 1 0.304456362244892 1 0.397847712039948 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487264 nonsynonymous SNV 0.997 2 20 hm5C_associated_SNPs_32687 0 0 1 1 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32657 DeepMRMD:1;iRNA_m5C:0.999536712157815 32658 chr3 14487264 14487264 1 + G T SARC 14487269 + 14487249 14487289 41 TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTTGGAG TTTTCCTGTTTGGGATCGGCCTGCCTGTGTTTTTCTTGGAG < 41bp 1 0.299671422292956 1 0.188096910715103 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487269 chr3:14487264 nonsynonymous SNV 0.997 2 16 hm5C_associated_SNPs_32688 0 0 1 1 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_32658 DeepMRMD:1;iRNA_m5C:0.999536712157815 32659 chr4 48835484 48835484 1 + G T SARC 48835494 + 48835474 48835514 41 AATGATGAAAGCTTCTGGTTCAGATGTGAGTTCAATTTTCT AATGATGAAATCTTCTGGTTCAGATGTGAGTTCAATTTTCT < 41bp 1 0.309637640737934 1 0.304851770401001 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835494 chr4:48835484 nonsynonymous SNV 0.993 3 11 hm5C_associated_SNPs_32689 0 0 1 0 2 Ribosome 1 0.500231121950817 1 0.999537756098366 hm5C_site_32659 DeepMRMD:1;iRNA_m5C:0.999537756098366 32660 chr4 123160803 123160803 1 + G T SARC 123160814 + 123160794 123160834 41 AAGTACTAAGAGTCTTACTGCTGCTTTCTATGGGGACAAGC AAGTACTAATAGTCTTACTGCTGCTTTCTATGGGGACAAGC < 41bp 1 0.108631544160085 1 0.0681392550468445 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123160814 chr4:123160803 nonsynonymous SNV 0.995 3 10 hm5C_associated_SNPs_32690 0 0 1 0 0 Nucleus 1 0.500231592407116 1 0.999536815185769 hm5C_site_32660 DeepMRMD:1;iRNA_m5C:0.999536815185769 32661 chr5 177019607 177019607 1 + G T SARC 177019588 + 177019568 177019608 41 CCCTCAAGGAAACTACCGGACGCAGCTGTATGACAAGCAGC CCCTCAAGGAAACTACCGGACGCAGCTGTATGACAAGCATC < 41bp 1 0.595333726017429 1 0.203102797269821 experiment 0.809332547965143 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019588 chr5:177019607 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_32691 0 0 1 0 2 Ribosome 1 0.500231541734425 1 0.999536916531149 hm5C_site_32661 DeepMRMD:1;iRNA_m5C:0.999536916531149 32662 chr5 177019607 177019607 1 + G T SARC 177019601 + 177019581 177019621 41 TACCGGACGCAGCTGTATGACAAGCAGCGGGAGGAGTACCA TACCGGACGCAGCTGTATGACAAGCATCGGGAGGAGTACCA < 41bp 1 0.61152749927808 1 0.419057607650757 experiment 0.77694500144384 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019601 chr5:177019607 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_32693 0 0 1 0 2 Ribosome 1 0.500231771018659 1 0.999536457962681 hm5C_site_32662 DeepMRMD:1;iRNA_m5C:0.999536457962681 32663 chr6 7231515 7231515 1 + G T SARC 7231530 + 7231510 7231550 41 GAAGAGCTGCCCCCGCTGGCCTCCATTGCCCAGATCATCTC GAAGATCTGCCCCCGCTGGCCTCCATTGCCCAGATCATCTC < 41bp 1 0.615679011285865 1 0.965041100978851 experiment 0.768641977428271 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RREB1 ENSG00000124782 CDS Human protein_coding chr6:7231530 chr6:7231515 nonsynonymous SNV 0.997 4 6 hm5C_associated_SNPs_32694 0 0 1 0 0 Nucleus 1 0.500231777389484 0.069917798042298 0.999536445221033 hm5C_site_32663 DeepMRMD:0.069917798042298;iRNA_m5C:0.999536445221033 32664 chr6 21000494 21000494 1 + G T SARC 21000514 + 21000494 21000534 41 GCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGT TCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGT < 41bp 1 0.192125955678575 1 0.047011137008667 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21000514 chr6:21000494 nonsynonymous SNV 0.983 0 1 hm5C_associated_SNPs_32695 0 0 1 0 1 Nucleus 1 0.500231638689866 1 0.999536722620268 hm5C_site_32664 DeepMRMD:1;iRNA_m5C:0.999536722620268 32665 chr6 168363201 168363201 1 + G T SARC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGCTCCGGCGGCAGGAGGAGGAGCG < 41bp 1 0.350675714668283 1 0.66991776227951 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363201 nonsynonymous SNV 0.005 1 20 hm5C_associated_SNPs_32696 0 0 1 0 3 unknown 1 0.500231643921075 0.66016447544098 0.999536712157849 hm5C_site_32665 DeepMRMD:0.66016447544098;iRNA_m5C:0.999536712157849 32666 chr7 99702543 99702543 1 + G T SARC 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GAGATTCGGCTCAAGATCTTCCTTCCTAGCGGCTCTGGTGA < 41bp 1 0.0294130273247664 1 0.162442773580551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702543 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_32697 0 0 1 0 2 Cytosol 1 0.500213718334686 1 0.999572563330629 hm5C_site_32666 DeepMRMD:1;iRNA_m5C:0.999572563330629 32667 chr7 99747142 99747142 1 + G T SARC 99747129 + 99747109 99747149 41 CTTTACCCACTAGACTTCTGCGCTGACCCAGGGGCTGGAGC CTTTACCCACTAGACTTCTGCGCTGACCCAGGGTCTGGAGC < 41bp 1 0.305455331206378 1 0.0612159073352814 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99747129 chr7:99747142 synonymous SNV . 0 34 hm5C_associated_SNPs_32698 0 0 1 0 2 Cytosol 1 0.500231643915076 1 0.999536712169849 hm5C_site_32667 DeepMRMD:1;iRNA_m5C:0.999536712169849 32668 chr8 22447210 22447210 1 + G T SARC 22447218 + 22447198 22447238 41 CCCGACAGTCCAGCTCCTTTCGGCTCTTGCAGGAAGCCCTG CCCGACAGTCCATCTCCTTTCGGCTCTTGCAGGAAGCCCTG < 41bp 1 0.688466216547235 1 0.166412681341171 experiment 0.623067566905529 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDLIM2 ENSG00000120913;ENSG00000248235 CDS Human other chr8:22447218 chr8:22447210 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_32699 0 0 1 0 1 Nucleus 1 0.500231643919256 1 0.999536712161489 hm5C_site_32668 DeepMRMD:1;iRNA_m5C:0.999536712161489 32669 chr8 90937467 90937467 1 + G T SARC 90937486 + 90937466 90937506 41 AGCAGTAGTATTGATAGGTTCTCATCCTAATCTGTCTTTTC ATCAGTAGTATTGATAGGTTCTCATCCTAATCTGTCTTTTC < 41bp 1 0.295323280723897 1 0.0585674643516541 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90937486 chr8:90937467 nonsynonymous SNV 0.819 4 2 hm5C_associated_SNPs_32700 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32669 DeepMRMD:1;iRNA_m5C:0.999536712157815 32670 chr11 63662717 63662717 1 + G T SARC 63662715 + 63662695 63662735 41 CAGCCACCTCTGCTGATGAGCAGCCCCACATTGGAAACTAC CAGCCACCTCTGCTGATGAGCATCCCCACATTGGAAACTAC < 41bp 1 0.0456297249499318 1 0.0755954682826996 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK2 ENSG00000072518 CDS Human protein_coding chr11:63662715 chr11:63662717 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_32701 0 0 1 0 0 Nucleus 1 0.500231643921112 1 0.999536712157777 hm5C_site_32670 DeepMRMD:1;iRNA_m5C:0.999536712157777 32671 chr11 102094462 102094462 1 + G T SARC 102094453 + 102094433 102094473 41 TCAGGAATTGAGAACAATGACGACCAATAGCTCAGATCCTT TCAGGAATTGAGAACAATGACGACCAATATCTCAGATCCTT < 41bp 1 0.423438838185474 1 0.100971966981888 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YAP1 ENSG00000137693 CDS Human protein_coding chr11:102094453 chr11:102094462 nonsynonymous SNV 0.988 4 30 hm5C_associated_SNPs_32702 0 0 1 0 0 Ribosome 1 0.500231643921061 1 0.999536712157878 hm5C_site_32671 DeepMRMD:1;iRNA_m5C:0.999536712157878 32672 chr11 125514418 125514418 1 + G T SARC 125514419 + 125514399 125514439 41 ACATGTAGAACCCCTGGCAGCGGTTGGTCAAAAGAATGACA ACATGTAGAACCCCTGGCATCGGTTGGTCAAAAGAATGACA < 41bp 1 0.215254660907357 1 0.308388948440552 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125514419 chr11:125514418 nonsynonymous SNV 0.996 4 20 hm5C_associated_SNPs_32703 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32672 DeepMRMD:1;iRNA_m5C:0.999536712157815 32673 chr12 113596715 113596715 1 + G T SARC 113596717 - 113596697 113596737 41 GCGCCTTCGGCCGGGGTGCCCGCTCCAAGAAGGGCAAGATG GCGCCTTCGGCCGGGGTGCCCGATCCAAGAAGGGCAAGATG < 41bp 1 0.259900528605928 1 0.475106567144394 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX54 ENSG00000123064 CDS Human protein_coding chr12:113596717 chr12:113596715 synonymous SNV . 0 23 hm5C_associated_SNPs_32704 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32673 DeepMRMD:1;iRNA_m5C:0.999536712157815 32674 chr12 113596715 113596715 1 + G T SARC 113596718 - 113596698 113596738 41 GGCGCCTTCGGCCGGGGTGCCCGCTCCAAGAAGGGCAAGAT GGCGCCTTCGGCCGGGGTGCCCGATCCAAGAAGGGCAAGAT < 41bp 1 0.183064722382617 1 0.653153419494629 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX54 ENSG00000123064 CDS Human protein_coding chr12:113596718 chr12:113596715 synonymous SNV . 0 24 hm5C_associated_SNPs_32705 0 0 1 0 0 Ribosome 1 0.500231643913465 0.693693161010742 0.99953671217307 hm5C_site_32674 DeepMRMD:0.693693161010742;iRNA_m5C:0.99953671217307 32675 chr17 34147387 34147387 1 + G T SARC 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATATCCAGCAACCATATAATAACCAGGGA < 41bp 1 0.188546128199228 1 0.311992108821869 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147387 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_32706 0 0 1 1 2 Cytosol 1 0.500231647334918 1 0.999536705330163 hm5C_site_32675 DeepMRMD:1;iRNA_m5C:0.999536705330163 32676 chr17 40716085 40716085 1 + G T SARC 40716079 + 40716059 40716099 41 TCCTTGACTTTTGATGTCATCCCCCTGCTGGACCCCTATGG TCCTTGACTTTTGATGTCATCCCCCTTCTGGACCCCTATGG < 41bp 1 0.240164894223051 1 0.0920664370059967 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40716079 chr17:40716085 synonymous SNV . 0 27 hm5C_associated_SNPs_32707 0 0 1 0 0 Ribosome 1 0.500231643921854 1 0.999536712156291 hm5C_site_32676 DeepMRMD:1;iRNA_m5C:0.999536712156291 32677 chr19 17836868 17836868 1 + G T SARC 17836880 + 17836860 17836900 41 CCCTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCT CCCTTCGATCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCT < 41bp 1 0.456273879490605 1 0.396854400634766 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836880 chr19:17836868 nonsynonymous SNV 0.155 0 9 hm5C_associated_SNPs_32708 0 0 1 0 0 Cytosol 1 0.500231643922933 1 0.999536712154134 hm5C_site_32677 DeepMRMD:1;iRNA_m5C:0.999536712154134 32678 chr19 17836868 17836868 1 + G T SARC 17836882 + 17836862 17836902 41 CTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCTCA CTTCGATCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCTCA < 41bp 1 0.343937489208033 1 0.468171328306198 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836882 chr19:17836868 nonsynonymous SNV 0.155 0 7 hm5C_associated_SNPs_32709 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32678 DeepMRMD:1;iRNA_m5C:0.999536712157815 32679 chr20 62312058 62312058 1 + G T SARC 62312059 + 62312039 62312079 41 GGCCGGACTGCAGAAGCTGGCGGACATTATCCAGGTGGGGC GGCCGGACTGCAGAAGCTGTCGGACATTATCCAGGTGGGGC < 41bp 1 0.293401447435951 1 0.501323640346527 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62312059 chr20:62312058 nonsynonymous SNV 0.510 0 20 hm5C_associated_SNPs_32711 0 0 1 0 2 chromatin 1 0.500231643921093 0.997352719306946 0.999536712157814 hm5C_site_32679 DeepMRMD:0.997352719306946;iRNA_m5C:0.999536712157814 32680 chrX 41089059 41089059 1 + G T SARC 41089043 + 41089023 41089063 41 TCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG TCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCATATAG < 41bp 1 0.0471444217211938 1 0.159499704837799 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089043 chrX:41089059 nonsynonymous SNV 0.999 0 37 hm5C_associated_SNPs_32712 0 0 0 0 1 Nucleus 1 0.500231642533522 1 0.999536714932956 hm5C_site_32680 DeepMRMD:1;iRNA_m5C:0.999536714932956 32681 chrX 41089059 41089059 1 + G T SARC 41089044 + 41089024 41089064 41 CCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGA CCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCATATAGA < 41bp 1 0.492881623099482 1 0.17057666182518 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089044 chrX:41089059 nonsynonymous SNV 0.999 0 36 hm5C_associated_SNPs_32713 0 0 0 0 1 Nucleus 1 0.500231644023927 1 0.999536711952147 hm5C_site_32681 DeepMRMD:1;iRNA_m5C:0.999536711952147 32682 chrX 41089059 41089059 1 + G T SARC 41089046 + 41089026 41089066 41 AGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAA AGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCATATAGAAA < 41bp 1 0.0598806012695053 1 0.0546635389328003 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089046 chrX:41089059 nonsynonymous SNV 0.999 0 34 hm5C_associated_SNPs_32714 0 0 0 0 1 Nucleus 1 0.500231647528834 1 0.999536704942333 hm5C_site_32682 DeepMRMD:1;iRNA_m5C:0.999536704942333 32683 chrX 41089059 41089059 1 + G T SARC 41089047 + 41089027 41089067 41 GAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAAT GAGGAGGTAAAAAAAGCCACCAGTGTGCAGCATATAGAAAT < 41bp 1 0.119436905192958 1 0.104471474885941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089047 chrX:41089059 nonsynonymous SNV 0.999 0 33 hm5C_associated_SNPs_32715 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32683 DeepMRMD:1;iRNA_m5C:0.999536712157815 32684 chr3 130683797 130683797 1 + T A SARC 130683793 + 130683773 130683813 41 TAATGATTTAATTCTTTAGGCTGCTGTAATGTGATTTGTTC TAATGATTTAATTCTTTAGGCTGCAGTAATGTGATTTGTTC < 41bp 1 0.489586776150663 1 0.394155621528625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130683793 chr3:130683797 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_32717 0 0 1 0 2 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_32684 DeepMRMD:1;iRNA_m5C:0.99953671215781 32685 chr16 50342240 50342240 1 + C T SARC 50342243 + 50342223 50342263 41 TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGTGTCCTTCG TTCCCTCCTCTCCAGGATGGCGGCACTGGGTGTGTCCTTCG < 41bp 1 0.648760011491133 1 0.342694759368896 experiment 0.702479977017733 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50342243 chr16:50342240 nonsynonymous SNV 0.007 0 18 hm5C_associated_SNPs_32719 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643932079 1 0.999536712135841 hm5C_site_32685 DeepMRMD:1;iRNA_m5C:0.999536712135841 32686 chr12 132325123 132325123 1 + G T SARC 132325139 + 132325119 132325159 41 GTCCGGACGTTCCCACGGGACTCACCACTGGGGCACGACAC GTCCTGACGTTCCCACGGGACTCACCACTGGGGCACGACAC < 41bp 1 0.161206532721059 1 0.171579331159592 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325139 chr12:132325123 nonsynonymous SNV 0.927 1 5 hm5C_associated_SNPs_32720 0 0 1 0 0 Cytosol 1 0.500241013412049 1 0.999517973175901 hm5C_site_32686 DeepMRMD:1;iRNA_m5C:0.999517973175901 32687 chr15 74918210 74918210 1 + G T SARC 74918204 + 74918184 74918224 41 ACATGTGCATCGCCTTTGAGCTCCTGGGCAAGAACACCTTT ACATGTGCATCGCCTTTGAGCTCCTGTGCAAGAACACCTTT < 41bp 1 0.483755629618063 1 0.119519084692001 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74918204 chr15:74918210 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_32721 0 0 1 0 2 Nucleus 1 0.500231642722597 1 0.999536714554805 hm5C_site_32687 DeepMRMD:1;iRNA_m5C:0.999536714554805 32688 chr1 10402206 10402206 1 + G A SARC 10402207 + 10402187 10402227 41 AGCAGCACCCACTTCATCTGCAAGGACAGGAGCTTAACAGG AGCAGCACCCACTTCATCTACAAGGACAGGAGCTTAACAGG < 41bp 1 0.314173203256746 1 0.723155200481415 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10402207 chr1:10402206 synonymous SNV . 0 20 hm5C_associated_SNPs_32722 0 0 1 0 2 Cytosol 1 0.500231643921092 0.55368959903717 0.999536712157815 hm5C_site_32688 DeepMRMD:0.55368959903717;iRNA_m5C:0.999536712157815 32689 chr4 184192380 184192380 1 + G T SARC 184192371 + 184192351 184192391 41 CTGTATTTCAACCAAACCAGCCGTTAGTAGATTCTATAGAC CTGTATTTCAACCAAACCAGCCGTTAGTATATTCTATAGAC < 41bp 1 0.023661770715509 1 0.0524653792381287 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184192371 chr4:184192380 nonsynonymous SNV 0.008 1 30 hm5C_associated_SNPs_32723 0 0 1 0 1 Cytosol 1 0.500231643243681 1 0.999536713512639 hm5C_site_32689 DeepMRMD:1;iRNA_m5C:0.999536713512639 32690 chr5 141353195 141353195 1 + G T SARC 141353198 + 141353178 141353218 41 CAGGAGGATGAATTGCTGGCCCTGGCAAGTATTTACGATGG CAGGAGGATGAATTGCTTGCCCTGGCAAGTATTTACGATGG < 41bp 1 0.405701722709058 1 0.180965334177017 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141353198 chr5:141353195 synonymous SNV . 0 18 hm5C_associated_SNPs_32724 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32690 DeepMRMD:1;iRNA_m5C:0.999536712157815 32691 chr19 49993810 49993810 1 + G A SARC 49993825 + 49993805 49993845 41 CAGCCGCATCTTCTGGCGGACCGTGCGAGGTGAGCAGAGCG CAGCCACATCTTCTGGCGGACCGTGCGAGGTGAGCAGAGCG < 41bp 1 0.163380931544708 1 0.35992220044136 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993825 chr19:49993810 nonsynonymous SNV 0.995 1 6 hm5C_associated_SNPs_32726 0 0 1 0 2 Cytosol 1 0.50023164987127 1 0.99953670025746 hm5C_site_32691 DeepMRMD:1;iRNA_m5C:0.99953670025746 32692 chr22 26400685 26400685 1 + G T SARC 26400695 + 26400675 26400715 41 TTATTCTAGGGATAACGTCTCCATCCTCAGCTCCCAGCCAG TTATTCTAGGTATAACGTCTCCATCCTCAGCTCCCAGCCAG < 41bp 1 0.0286875536718606 1 0.245840668678284 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26400695 chr22:26400685 nonsynonymous SNV 0.858 2 11 hm5C_associated_SNPs_32727 0 0 0 0 1 chromatin 1 0.500231595605906 1 0.999536808788187 hm5C_site_32692 DeepMRMD:1;iRNA_m5C:0.999536808788187 32693 chr5 176524620 176524620 1 + C T SARC 176524624 + 176524604 176524644 41 ATTCTGTCTTCAGCCACGACCCCCTGCCATTGGGATCCAGC ATTCTGTCTTCAGCCATGACCCCCTGCCATTGGGATCCAGC < 41bp 1 0.171682235864104 1 0.0344964563846588 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524624 chr5:176524620 synonymous SNV . 0 17 hm5C_associated_SNPs_32728 0 0 1 0 1 Endoplasmic reticulum 1 0.500231635676975 1 0.999536728646049 hm5C_site_32693 DeepMRMD:1;iRNA_m5C:0.999536728646049 32694 chr5 176524620 176524620 1 + C T SARC 176524627 + 176524607 176524647 41 CTGTCTTCAGCCACGACCCCCTGCCATTGGGATCCAGCTCC CTGTCTTCAGCCATGACCCCCTGCCATTGGGATCCAGCTCC < 41bp 1 0.303645756772742 1 0.0377809405326843 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524627 chr5:176524620 synonymous SNV . 0 14 hm5C_associated_SNPs_32729 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643093614 1 0.999536713812772 hm5C_site_32694 DeepMRMD:1;iRNA_m5C:0.999536713812772 32695 chr7 142459626 142459626 1 + C T SARC 142459628 + 142459608 142459648 41 CCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGA CCTGCCCTGCCCATCAGCTGCATCCAGGTGAGACTGGGAGA < 41bp 1 0.247894553957658 1 0.0575610399246216 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459628 chr7:142459626 nonsynonymous SNV 0.585 3 19 hm5C_associated_SNPs_32732 0 0 0 0 1 Cytosol 1 0.500231643672073 1 0.999536712655853 hm5C_site_32695 DeepMRMD:1;iRNA_m5C:0.999536712655853 32696 chr7 142459626 142459626 1 + C T SARC 142459631 + 142459611 142459651 41 GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCA GCCCTGCCCATCAGCTGCATCCAGGTGAGACTGGGAGAGCA < 41bp 1 0.597763948607197 1 0.818934857845306 experiment 0.804472102785607 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459631 chr7:142459626 nonsynonymous SNV 0.585 3 16 hm5C_associated_SNPs_32733 0 0 0 0 1 Cytosol 1 0.500231643919593 0.362130284309388 0.999536712160814 hm5C_site_32696 DeepMRMD:0.362130284309388;iRNA_m5C:0.999536712160814 32697 chr15 40284991 40284991 1 + G T SARC 40284974 + 40284954 40284994 41 GTTTTCCTCCACACAGGTCACTTAACTGGGATGGTTGGCAC GTTTTCCTCCACACAGGTCACTTAACTGGGATGGTTGTCAC < 41bp 1 0.387676215306771 1 0.680598318576813 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40284974 chr15:40284991 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_32734 0 0 1 0 2 Ribosome 1 0.500231608370332 0.638803362846374 0.999536783259337 hm5C_site_32697 DeepMRMD:0.638803362846374;iRNA_m5C:0.999536783259337 32698 chr16 19126060 19126060 1 + C T SKCM 19126077 + 19126057 19126097 41 TTCCGAGAGCCGGGCCTCAGCATCCTGCTGGAGAGTTACTA TTCTGAGAGCCGGGCCTCAGCATCCTGCTGGAGAGTTACTA < 41bp 1 0.25825554012127 1 0.39610230922699 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITPRIPL2 ENSG00000205730;ENSG00000261427 CDS Human other chr16:19126077 chr16:19126060 stopgain 0.144 0 4 hm5C_associated_SNPs_32736 0 0 1 0 1 Ribosome 1 0.500231643921089 1 0.999536712157821 hm5C_site_32698 DeepMRMD:1;iRNA_m5C:0.999536712157821 32699 chr19 55817708 55817708 1 + C T SKCM 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC GTCTTCCAAAAGCTCGTCCGCTTCCAGGTGGACATCAGCTC < 41bp 1 0.116255564091905 1 0.141448020935059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817708 nonsynonymous SNV 0.939 4 14 hm5C_associated_SNPs_32737 0 0 1 0 1 chromatin 1 0.500232004264743 1 0.999535991470513 hm5C_site_32699 DeepMRMD:1;iRNA_m5C:0.999535991470513 32700 chr18 2891995 2891995 1 + C T SKCM 2891978 + 2891958 2891998 41 TTATTCTCAATTAAACCACACAGAAAATGATGTGACTCATC TTATTCTCAATTAAACCACACAGAAAATGATGTGACTTATC < 41bp 1 0.155513949392738 1 0.171061456203461 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2891978 chr18:2891995 nonsynonymous SNV 0.001 0 38 hm5C_associated_SNPs_32739 0 0 0 0 0 Ribosome 1 0.500230656135333 1 0.999538687729334 hm5C_site_32700 DeepMRMD:1;iRNA_m5C:0.999538687729334 32701 chr14 64484368 64484368 1 + G A SKCM 64484376 + 64484356 64484396 41 CTCTAGCTTTGTGGGACAAACTTTTTAACTTAAAAAATGTC CTCTAGCTTTGTAGGACAAACTTTTTAACTTAAAAAATGTC < 41bp 1 0.0357544010813386 1 0.0849299132823944 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64484376 chr14:64484368 stopgain 1.000 1 13 hm5C_associated_SNPs_32740 0 0 1 0 1 Nucleus 1 0.500231643924952 1 0.999536712150095 hm5C_site_32701 DeepMRMD:1;iRNA_m5C:0.999536712150095 32702 chr15 64410326 64410326 1 + G T SKCM 64410330 + 64410310 64410350 41 TTTTAGATGCCACAGTGGAGCTATCCTTGGACAGCACACAA TTTTAGATGCCACAGTTGAGCTATCCTTGGACAGCACACAA < 41bp 1 0.0801705617519913 1 0.179346561431885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410330 chr15:64410326 synonymous SNV . 0 17 hm5C_associated_SNPs_32741 0 0 1 0 1 Ribosome 1 0.500231853650553 1 0.999536292698895 hm5C_site_32702 DeepMRMD:1;iRNA_m5C:0.999536292698895 32703 chr15 64410326 64410326 1 + G T SKCM 64410334 + 64410314 64410354 41 AGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAAATA AGATGCCACAGTTGAGCTATCCTTGGACAGCACACAAAATA < 41bp 1 0.0404663248447787 1 0.127643793821335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410334 chr15:64410326 synonymous SNV . 0 13 hm5C_associated_SNPs_32742 0 0 1 0 1 Ribosome 1 0.500227932942461 1 0.999544134115077 hm5C_site_32703 DeepMRMD:1;iRNA_m5C:0.999544134115077 32704 chr4 20568996 20568996 1 + C T SKCM 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTGACTTTTACCGATGCACCTGTCTATATGG < 41bp 1 0.111115151260179 1 0.321813374757767 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568996 nonsynonymous SNV 0.988 3 35 hm5C_associated_SNPs_32743 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32704 DeepMRMD:1;iRNA_m5C:0.999536712157815 32705 chr4 20568996 20568996 1 + C T SKCM 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTGACTTTTACCGATGCACCTGTCTATATGGT < 41bp 1 0.142337802061941 1 0.545811235904694 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568996 nonsynonymous SNV 0.988 3 34 hm5C_associated_SNPs_32744 0 0 0 0 1 Ribosome 1 0.500233991441325 0.908377528190612 0.999532017117351 hm5C_site_32705 DeepMRMD:0.908377528190612;iRNA_m5C:0.999532017117351 32706 chr7 73944161 73944161 1 + C T SKCM 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATTCCCTTCAAGCGCCCCTGCACTT < 41bp 1 0.0225774564586283 1 0.127998054027557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944161 synonymous SNV . 0 19 hm5C_associated_SNPs_32745 0 0 1 0 2 Nucleus 1 0.500132762511746 1 0.999734474976508 hm5C_site_32706 DeepMRMD:1;iRNA_m5C:0.999734474976508 32707 chr6 30610592 30610592 1 + C T SKCM 30610600 + 30610580 30610620 41 AACAGGGCCCCTCGCCGCGCCACACCTCCAGCCCACCCACC AACAGGGCCCCTTGCCGCGCCACACCTCCAGCCCACCCACC < 41bp 1 0.290640628794262 1 0.429947018623352 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATAT1 ENSG00000137343 CDS Human protein_coding chr6:30610600 chr6:30610592 nonsynonymous SNV 0.985 3 13 hm5C_associated_SNPs_32746 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32707 DeepMRMD:1;iRNA_m5C:0.999536712157815 32708 chr16 2818193 2818193 1 + C T SKCM 2818203 + 2818183 2818223 41 TCCTCCTCCTCCTCTGGCTCCAGTTCTAGTGACTCAGAGGG TCCTCCTCCTTCTCTGGCTCCAGTTCTAGTGACTCAGAGGG < 41bp 1 0.094500917447178 1 0.200719058513641 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2818203 chr16:2818193 nonsynonymous SNV 0.661 3 11 hm5C_associated_SNPs_32747 0 0 1 0 0 Nucleus 1 0.5002316439211 1 0.9995367121578 hm5C_site_32708 DeepMRMD:1;iRNA_m5C:0.9995367121578 32709 chr17 19237303 19237303 1 + C T SKCM 19237313 + 19237293 19237333 41 TTAACCCTTTCCAGGTGAACCAGCCCCAGCCGCTGACACTG TTAACCCTTTTCAGGTGAACCAGCCCCAGCCGCTGACACTG < 41bp 1 0.524088126036718 1 0.408749282360077 experiment 0.951823747926564 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EPN2 ENSG00000072134 CDS Human protein_coding chr17:19237313 chr17:19237303 synonymous SNV . 0 11 hm5C_associated_SNPs_32750 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32709 DeepMRMD:1;iRNA_m5C:0.999536712157815 32710 chr9 135919197 135919197 1 + C T SKCM 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTTCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC < 41bp 1 0.0544232451313802 1 0.0231720209121704 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919197 synonymous SNV . 0 3 hm5C_associated_SNPs_32751 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32710 DeepMRMD:1;iRNA_m5C:0.999536712157815 32711 chr1 200817237 200817237 1 + G A SKCM 200817245 + 200817225 200817265 41 CTCCAAACCGAGGAATCACTCGTTCTATTAGTAATGAAGGA CTCCAAACCGAGAAATCACTCGTTCTATTAGTAATGAAGGA < 41bp 1 0.0629906424411444 1 0.541677892208099 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200817245 chr1:200817237 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_32752 0 0 1 0 1 chromatin 1 0.500231643880427 0.916644215583802 0.999536712239147 hm5C_site_32711 DeepMRMD:0.916644215583802;iRNA_m5C:0.999536712239147 32712 chr15 41192210 41192210 1 + C T SKCM 41192201 + 41192181 41192221 41 TACCACGTGCAACGGGAGGCCCGAGATGTCTGGCGCACCTA TACCACGTGCAACGGGAGGCCCGAGATGTTTGGCGCACCTA < 41bp 1 0.295486379567776 1 0.490027755498886 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192201 chr15:41192210 synonymous SNV . 0 30 hm5C_associated_SNPs_32753 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32712 DeepMRMD:1;iRNA_m5C:0.999536712157815 32713 chr17 48631746 48631746 1 + C T SKCM 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTTG < 41bp 1 0.0491419376693786 1 0.0126864910125732 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631746 nonsynonymous SNV 0.833 2 40 hm5C_associated_SNPs_32755 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32713 DeepMRMD:1;iRNA_m5C:0.999536712157815 32714 chr1 43903269 43903269 1 + C T SKCM 43903277 + 43903257 43903297 41 CTTTCCCAGGCTCCTAGAGACATCCTGCAGTGACCGGCCAT CTTTCCCAGGCTTCTAGAGACATCCTGCAGTGACCGGCCAT < 41bp 1 0.0508142329266739 1 0.0400717258453369 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43903277 chr1:43903269 synonymous SNV . 0 13 hm5C_associated_SNPs_32756 0 0 0 0 1 Cytosol 1 0.500231643885375 1 0.999536712229249 hm5C_site_32714 DeepMRMD:1;iRNA_m5C:0.999536712229249 32715 chr7 142459670 142459670 1 + G A SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAAGGGAA < 41bp 1 0.677077575069877 1 0.126971811056137 experiment 0.645844849860247 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459670 synonymous SNV . 0 36 hm5C_associated_SNPs_32757 0 0 0 0 1 Cytosol 1 0.500231651385034 1 0.999536697229933 hm5C_site_32715 DeepMRMD:1;iRNA_m5C:0.999536697229933 32716 chr7 142459670 142459670 1 + G A SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTGGAAGGGAATGAGCAGTT < 41bp 1 0.549986952706525 1 0.286900043487549 experiment 0.900026094586951 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459670 synonymous SNV . 0 27 hm5C_associated_SNPs_32759 0 0 0 0 1 Cytosol 1 0.500231643903112 1 0.999536712193776 hm5C_site_32716 DeepMRMD:1;iRNA_m5C:0.999536712193776 32717 chr7 142459670 142459670 1 + G A SKCM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAAGGGAATGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.509727288346642 1 0.19905212521553 experiment 0.980545423306715 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459670 synonymous SNV . 0 11 hm5C_associated_SNPs_32760 0 0 0 0 1 Cytosol 1 0.500231643486632 1 0.999536713026735 hm5C_site_32717 DeepMRMD:1;iRNA_m5C:0.999536713026735 32718 chr7 142459670 142459670 1 + G A SKCM 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAAGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.638789652102476 1 0.0452648103237152 experiment 0.722420695795049 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459670 synonymous SNV . 0 6 hm5C_associated_SNPs_32761 0 0 0 0 1 Cytosol 1 0.500231644763003 1 0.999536710473995 hm5C_site_32718 DeepMRMD:1;iRNA_m5C:0.999536710473995 32719 chr7 142459670 142459670 1 + G A SKCM 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAAGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG < 41bp 1 0.660298724818049 1 0.239472299814224 experiment 0.679402550363902 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459670 synonymous SNV . 0 3 hm5C_associated_SNPs_32762 0 0 0 0 1 Cytosol 1 0.500230637495285 1 0.999538725009431 hm5C_site_32719 DeepMRMD:1;iRNA_m5C:0.999538725009431 32720 chr19 18729300 18729300 1 + C T SKCM 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCTAGGT < 41bp 1 0.197015859679432 1 0.135787695646286 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729300 stopgain 0.994 1 37 hm5C_associated_SNPs_32763 0 0 0 0 1 Cytosol 1 0.500231644255345 1 0.99953671148931 hm5C_site_32720 DeepMRMD:1;iRNA_m5C:0.99953671148931 32721 chr12 53427604 53427604 1 + C T SKCM 53427592 + 53427572 53427612 41 AAGTTTCATTTAACTTAGGTCCCCCCCAAAGACCCAAACTG AAGTTTCATTTAACTTAGGTCCCCCCCAAAGATCCAAACTG < 41bp 1 0.0431724433547317 1 0.0445610582828522 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53427592 chr12:53427604 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_32764 0 0 1 0 1 Cytosol 1 0.500231644347205 1 0.99953671130559 hm5C_site_32721 DeepMRMD:1;iRNA_m5C:0.99953671130559 32722 chr20 47705915 47705915 1 + C T SKCM 47705919 + 47705899 47705939 41 TGGTGTTTACTGAAATCTTACAAAATGATGTGCAAGGTAAG TGGTGTTTACTGAAATTTTACAAAATGATGTGCAAGGTAAG < 41bp 1 0.37883299865992 1 0.354199767112732 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47705919 chr20:47705915 synonymous SNV . 0 17 hm5C_associated_SNPs_32765 0 0 1 0 1 Nucleus 1 0.500231465468334 1 0.999537069063331 hm5C_site_32722 DeepMRMD:1;iRNA_m5C:0.999537069063331 32723 chr19 3434309 3434309 1 + C T SKCM 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGGAACAGGACCCAACTTCTCTCTGGGGGAGCTGCAGGG < 41bp 1 0.19875344957202 1 0.671404898166656 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434309 synonymous SNV . 0 24 hm5C_associated_SNPs_32766 0 0 1 0 2 Ribosome 1 0.500231643921093 0.657190203666688 0.999536712157815 hm5C_site_32723 DeepMRMD:0.657190203666688;iRNA_m5C:0.999536712157815 32724 chrX 41198307 41198307 1 + C T SKCM 41198304 + 41198284 41198324 41 TTTAGAAGGGCGCTATATTCCTCCTCATTTAAGGAACCGAG TTTAGAAGGGCGCTATATTCCTCTTCATTTAAGGAACCGAG < 41bp 1 0.168400124071342 1 0.269516468048096 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41198304 chrX:41198307 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_32767 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_32724 DeepMRMD:1;iRNA_m5C:0.999536712157815 32725 chr19 16962281 16962281 1 + C T SKCM 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC TCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC < 41bp 1 0.30988749822798 1 0.322341471910477 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962281 nonsynonymous SNV 0.026 0 1 hm5C_associated_SNPs_32768 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32725 DeepMRMD:1;iRNA_m5C:0.999536712157815 32726 chr16 89789747 89789747 1 + C T SKCM 89789767 + 89789747 89789787 41 CCTGCCCCACCTTCAGAGGACACTGTCCTCCGAGTACTGCG TCTGCCCCACCTTCAGAGGACACTGTCCTCCGAGTACTGCG < 41bp 1 0.30110760047386 1 0.0287642478942871 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF276 ENSG00000158805 CDS Human protein_coding chr16:89789767 chr16:89789747 nonsynonymous SNV 0.572 0 1 hm5C_associated_SNPs_32769 0 0 1 0 1 Nucleus 1 0.500231683494613 1 0.999536633010773 hm5C_site_32726 DeepMRMD:1;iRNA_m5C:0.999536633010773 32727 chr19 16962282 16962282 1 + C T SKCM 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC CTCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC < 41bp 1 0.293502396395567 1 0.323396861553192 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962282 synonymous SNV . 0 2 hm5C_associated_SNPs_32770 0 0 0 0 2 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_32727 DeepMRMD:1;iRNA_m5C:0.999536712157808 32728 chr1 22336293 22336293 1 + C T SKCM 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTTA < 41bp 1 0.59920516739279 1 0.09054234623909 experiment 0.80158966521442 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336293 synonymous SNV . 0 40 hm5C_associated_SNPs_32771 0 0 0 0 1 Endoplasmic reticulum 1 0.500231584145883 1 0.999536831708234 hm5C_site_32728 DeepMRMD:1;iRNA_m5C:0.999536831708234 32729 chr1 22336293 22336293 1 + C T SKCM 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTTATCT < 41bp 1 0.03919995871127 1 0.022905170917511 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336293 synonymous SNV . 0 37 hm5C_associated_SNPs_32772 0 0 0 0 1 Endoplasmic reticulum 1 0.500231645163539 1 0.999536709672923 hm5C_site_32729 DeepMRMD:1;iRNA_m5C:0.999536709672923 32730 chr1 22336293 22336293 1 + C T SKCM 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTTATCTG < 41bp 1 0.273499949197467 1 0.0905782282352448 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336293 synonymous SNV . 0 36 hm5C_associated_SNPs_32773 0 0 0 0 1 Endoplasmic reticulum 1 0.500255256682318 1 0.999489486635364 hm5C_site_32730 DeepMRMD:1;iRNA_m5C:0.999489486635364 32731 chr1 22336293 22336293 1 + C T SKCM 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGCCTTTGGCTGCAACTTTATCTGGAAGCCCAC < 41bp 1 0.284111766235229 1 0.0218507647514343 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336293 synonymous SNV . 0 27 hm5C_associated_SNPs_32775 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_32731 DeepMRMD:1;iRNA_m5C:0.999536712157815 32732 chr1 22336293 22336293 1 + C T SKCM 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGGCTGCAACTTTATCTGGAAGCCCACGGT < 41bp 1 0.357571840357295 1 0.33689758181572 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336293 synonymous SNV . 0 24 hm5C_associated_SNPs_32776 0 0 0 0 1 Endoplasmic reticulum 1 0.500231713535865 1 0.99953657292827 hm5C_site_32732 DeepMRMD:1;iRNA_m5C:0.99953657292827 32733 chr1 22336293 22336293 1 + C T SKCM 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTTATCTGGAAGCCCACGGTGTTCACTCGAGTC < 41bp 1 0.196825336395359 1 0.139496117830276 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336293 synonymous SNV . 0 11 hm5C_associated_SNPs_32777 0 0 0 0 1 Endoplasmic reticulum 1 0.500231640772525 1 0.99953671845495 hm5C_site_32733 DeepMRMD:1;iRNA_m5C:0.99953671845495 32734 chr1 22336293 22336293 1 + C T SKCM 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTTATCTGGAAGCCCACGGTGTTCACTCGAGTCT < 41bp 1 0.314810416135428 1 0.157628029584885 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336293 synonymous SNV . 0 10 hm5C_associated_SNPs_32778 0 0 0 0 1 Endoplasmic reticulum 1 0.500231592115448 1 0.999536815769104 hm5C_site_32734 DeepMRMD:1;iRNA_m5C:0.999536815769104 32735 chr1 22336293 22336293 1 + C T SKCM 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTTATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG < 41bp 1 0.399779034514593 1 0.385743856430054 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336293 synonymous SNV . 0 7 hm5C_associated_SNPs_32780 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921083 1 0.999536712157834 hm5C_site_32735 DeepMRMD:1;iRNA_m5C:0.999536712157834 32736 chr19 3434308 3434308 1 + C T SKCM 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGGAACAGGACCCAACTTCTTCCTGGGGGAGCTGCAGGG < 41bp 1 0.162356761745631 1 0.525382518768311 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434308 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_32781 0 0 1 0 2 Ribosome 1 0.500231643921092 0.949234962463378 0.999536712157815 hm5C_site_32736 DeepMRMD:0.949234962463378;iRNA_m5C:0.999536712157815 32737 chr11 17316991 17316991 1 + G A SKCM 17316973 + 17316953 17316993 41 ACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGGAA ACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGAAA < 41bp 1 0.63417089172426 1 0.111795574426651 experiment 0.73165821655148 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316973 chr11:17316991 nonsynonymous SNV 0.997 0 39 hm5C_associated_SNPs_32782 0 0 1 0 1 Ribosome 1 0.500231686842033 1 0.999536626315935 hm5C_site_32737 DeepMRMD:1;iRNA_m5C:0.999536626315935 32738 chr1 150325390 150325390 1 + A G SKCM 150325400 + 150325380 150325420 41 GCATTTCAAAAAGCATGGGGCTGAACACTACTGGGACCTTG GCATTTCAAAGAGCATGGGGCTGAACACTACTGGGACCTTG < 41bp 1 0.632505186241822 1 0.10192346572876 experiment 0.734989627516355 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150325400 chr1:150325390 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_32783 0 0 1 0 0 Nucleus 1 0.500231686142539 1 0.999536627714922 hm5C_site_32738 DeepMRMD:1;iRNA_m5C:0.999536627714922 32739 chr7 99956644 99956644 1 + G A SKCM 99956624 + 99956604 99956644 41 ACCAGTCTGTGTATTTCTGCCGAGTCGAGCTGGACACCCGG ACCAGTCTGTGTATTTCTGCCGAGTCGAGCTGGACACCCGA < 41bp 1 0.573048323795187 1 0.772234559059143 experiment 0.853903352409626 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956624 chr7:99956644 nonsynonymous SNV 0.000 1 41 hm5C_associated_SNPs_32784 0 0 1 0 0 Cytosol 1 0.500271018328082 0.455530881881714 0.999457963343836 hm5C_site_32739 DeepMRMD:0.455530881881714;iRNA_m5C:0.999457963343836 32740 chr7 99956644 99956644 1 + G A SKCM 99956638 + 99956618 99956658 41 TTCTGCCGAGTCGAGCTGGACACCCGGAGATCAGGGAGGCA TTCTGCCGAGTCGAGCTGGACACCCGAAGATCAGGGAGGCA < 41bp 1 0.293124332882818 1 0.0301946699619293 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956638 chr7:99956644 nonsynonymous SNV 0.000 1 27 hm5C_associated_SNPs_32786 0 0 1 0 0 Cytosol 1 0.500231644068077 1 0.999536711863847 hm5C_site_32740 DeepMRMD:1;iRNA_m5C:0.999536711863847 32741 chr7 142459745 142459745 1 + C T SKCM 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCCCCAATACGACAGGAAGACTCTGAACAATGATATCATGT < 41bp 1 0.489521328155801 1 0.245990663766861 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459745 synonymous SNV . 0 34 hm5C_associated_SNPs_32787 0 0 0 0 0 Cytosol 1 0.500231637894378 1 0.999536724211243 hm5C_site_32741 DeepMRMD:1;iRNA_m5C:0.999536724211243 32742 chr7 142459745 142459745 1 + C T SKCM 142459739 + 142459719 142459759 41 TACGACAGGAAGACTCTGAACAATGACATCATGTTAATCAA TACGACAGGAAGACTCTGAACAATGATATCATGTTAATCAA < 41bp 1 0.547645280121426 1 0.111099123954773 experiment 0.904709439757148 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459739 chr7:142459745 synonymous SNV . 0 27 hm5C_associated_SNPs_32788 0 0 0 0 0 Cytosol 1 0.500231644150565 1 0.999536711698869 hm5C_site_32742 DeepMRMD:1;iRNA_m5C:0.999536711698869 32743 chr7 142459745 142459745 1 + C T SKCM 142459748 + 142459728 142459768 41 AAGACTCTGAACAATGACATCATGTTAATCAAGCTCTCCTC AAGACTCTGAACAATGATATCATGTTAATCAAGCTCTCCTC < 41bp 1 0.654689171951769 1 0.0378967821598053 experiment 0.690621656096461 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459748 chr7:142459745 synonymous SNV . 0 18 hm5C_associated_SNPs_32789 0 0 0 0 0 Cytosol 1 0.500231644021255 1 0.99953671195749 hm5C_site_32743 DeepMRMD:1;iRNA_m5C:0.99953671195749 32744 chr7 142459745 142459745 1 + C T SKCM 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATGATATCATGTTAATCAAGCTCTCCTCACGTGCAGT < 41bp 1 0.473533410566018 1 0.765871644020081 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459745 synonymous SNV . 0 9 hm5C_associated_SNPs_32790 0 0 0 0 0 Cytosol 1 0.500231643921381 0.468256711959838 0.999536712157238 hm5C_site_32744 DeepMRMD:0.468256711959838;iRNA_m5C:0.999536712157238 32745 chr7 142459745 142459745 1 + C T SKCM 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATGATATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC < 41bp 1 0.156607080459049 1 0.0437781810760498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459745 synonymous SNV . 0 5 hm5C_associated_SNPs_32791 0 0 0 0 0 Cytosol 1 0.500231646132885 1 0.999536707734229 hm5C_site_32745 DeepMRMD:1;iRNA_m5C:0.999536707734229 32746 chr7 142459745 142459745 1 + C T SKCM 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA GATATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA < 41bp 1 0.460977700477355 1 0.348781228065491 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459745 synonymous SNV . 0 3 hm5C_associated_SNPs_32792 0 0 0 0 0 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_32746 DeepMRMD:1;iRNA_m5C:0.999536712157808 32747 chr7 142459745 142459745 1 + C T SKCM 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG TATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG < 41bp 1 0.325749676722253 1 0.128691017627716 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459745 synonymous SNV . 0 1 hm5C_associated_SNPs_32793 0 0 0 0 0 Cytosol 1 0.500231643908421 1 0.999536712183158 hm5C_site_32747 DeepMRMD:1;iRNA_m5C:0.999536712183158 32748 chr7 99956643 99956643 1 + G A SKCM 99956624 + 99956604 99956644 41 ACCAGTCTGTGTATTTCTGCCGAGTCGAGCTGGACACCCGG ACCAGTCTGTGTATTTCTGCCGAGTCGAGCTGGACACCCAG < 41bp 1 0.592411443025867 1 0.750221908092499 experiment 0.815177113948267 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956624 chr7:99956643 nonsynonymous SNV 0.000 0 40 hm5C_associated_SNPs_32794 0 0 1 0 0 Cytosol 1 0.500231928235861 0.499556183815002 0.999536143528279 hm5C_site_32748 DeepMRMD:0.499556183815002;iRNA_m5C:0.999536143528279 32749 chr7 99956643 99956643 1 + G A SKCM 99956638 + 99956618 99956658 41 TTCTGCCGAGTCGAGCTGGACACCCGGAGATCAGGGAGGCA TTCTGCCGAGTCGAGCTGGACACCCAGAGATCAGGGAGGCA < 41bp 1 0.240525085387653 1 0.0302732884883881 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956638 chr7:99956643 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_32796 0 0 1 0 0 Cytosol 1 0.500234447331658 1 0.999531105336684 hm5C_site_32749 DeepMRMD:1;iRNA_m5C:0.999531105336684 32750 chr1 242042459 242042459 1 + C T SKCM 242042447 + 242042427 242042467 41 CAGCAGTTCCGAAGAAAGAGCGATTCCCCCACCTCTTTGCC CAGCAGTTCCGAAGAAAGAGCGATTCCCCCACTTCTTTGCC < 41bp 1 0.181904761702782 1 0.167077273130417 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242042447 chr1:242042459 synonymous SNV . 0 33 hm5C_associated_SNPs_32797 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32750 DeepMRMD:1;iRNA_m5C:0.999536712157815 32751 chr7 142457353 142457353 1 + C T SKCM 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATGAATCCACTCCTGATTCTTACCTTTGTG < 41bp 1 0.233370918722789 1 0.0734342932701111 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457353 synonymous SNV . 0 29 hm5C_associated_SNPs_32798 0 0 0 1 1 Cytosol 1 0.500231643780881 1 0.999536712438238 hm5C_site_32751 DeepMRMD:1;iRNA_m5C:0.999536712438238 32752 chr7 142457353 142457353 1 + C T SKCM 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATGAATCCACTCCTGATTCTTACCTTTGTGGC < 41bp 1 0.317950554029479 1 0.139533907175064 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457353 synonymous SNV . 0 27 hm5C_associated_SNPs_32799 0 0 0 1 1 Cytosol 1 0.5002316438874 1 0.9995367122252 hm5C_site_32752 DeepMRMD:1;iRNA_m5C:0.9995367122252 32753 chr7 142457353 142457353 1 + C T SKCM 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATGAATCCACTCCTGATTCTTACCTTTGTGGCA < 41bp 1 0.139229835942781 1 0.207706451416016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457353 synonymous SNV . 0 26 hm5C_associated_SNPs_32800 0 0 0 1 1 Cytosol 1 0.500231645045964 1 0.999536709908072 hm5C_site_32753 DeepMRMD:1;iRNA_m5C:0.999536709908072 32754 chr7 142457353 142457353 1 + C T SKCM 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATGAATCCACTCCTGATTCTTACCTTTGTGGCAGCTGCT < 41bp 1 0.0586589163518838 1 0.0637375712394714 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457353 synonymous SNV . 0 20 hm5C_associated_SNPs_32801 0 0 0 1 1 Cytosol 1 0.500231654860887 1 0.999536690278225 hm5C_site_32754 DeepMRMD:1;iRNA_m5C:0.999536690278225 32755 chr7 142457353 142457353 1 + C T SKCM 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCACTCCTGATTCTTACCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.0454477672343368 1 0.0181209146976471 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457353 synonymous SNV . 0 16 hm5C_associated_SNPs_32802 0 0 0 1 1 Cytosol 1 0.50023167644488 1 0.99953664711024 hm5C_site_32755 DeepMRMD:1;iRNA_m5C:0.99953664711024 32756 chr7 142457353 142457353 1 + C T SKCM 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCACTCCTGATTCTTACCTTTGTGGCAGCTGCTCGTGA < 41bp 1 0.169642162208512 1 0.470254421234131 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457353 synonymous SNV . 0 15 hm5C_associated_SNPs_32803 0 0 0 1 1 Cytosol 1 0.500232038252571 1 0.999535923494858 hm5C_site_32756 DeepMRMD:1;iRNA_m5C:0.999535923494858 32757 chr7 142457353 142457353 1 + C T SKCM 142457367 + 142457347 142457387 41 CCTGATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG CCTGATTCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG < 41bp 1 0.291523848752559 1 0.213887184858322 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457367 chr7:142457353 synonymous SNV . 0 7 hm5C_associated_SNPs_32804 0 0 0 1 1 Cytosol 1 0.50023134763227 1 0.999537304735461 hm5C_site_32757 DeepMRMD:1;iRNA_m5C:0.999537304735461 32758 chr7 142457353 142457353 1 + C T SKCM 142457370 + 142457350 142457390 41 GATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC GATTCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC < 41bp 1 0.281005418548943 1 0.145838499069214 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457370 chr7:142457353 synonymous SNV . 0 4 hm5C_associated_SNPs_32805 0 0 0 1 1 Cytosol 1 0.500231621874405 1 0.99953675625119 hm5C_site_32758 DeepMRMD:1;iRNA_m5C:0.99953675625119 32759 chr7 142457353 142457353 1 + C T SKCM 142457373 + 142457353 142457393 41 CCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC TCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCCTGC < 41bp 1 0.554143586042823 1 0.169555604457855 experiment 0.891712827914354 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457373 chr7:142457353 synonymous SNV . 0 1 hm5C_associated_SNPs_32806 0 0 0 1 1 Cytosol 1 0.500232118056932 1 0.999535763886137 hm5C_site_32759 DeepMRMD:1;iRNA_m5C:0.999535763886137 32760 chrX 73046480 73046480 1 + C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAAAACCCTAAAC < 41bp 1 0.65750013956348 1 0.628204226493835 experiment 0.684999720873041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046480 . . 0 31 hm5C_associated_SNPs_32807 0 0 1 8 0 unknown 1 0.500231643921092 0.74359154701233 0.999536712157815 hm5C_site_32760 DeepMRMD:0.74359154701233;iRNA_m5C:0.999536712157815 32761 chr17 77757718 77757718 1 + C T SKCM 77757717 + 77757697 77757737 41 CCAAACCCGAGCTGAAGGATCCCATCCGGAAGAAGCGGGGA CCAAACCCGAGCTGAAGGATCTCATCCGGAAGAAGCGGGGA < 41bp 1 0.297351307526731 1 0.183597564697266 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77757717 chr17:77757718 nonsynonymous SNV 0.977 1 22 hm5C_associated_SNPs_32808 0 0 1 0 0 chromatin 1 0.500231643921107 1 0.999536712157786 hm5C_site_32761 DeepMRMD:1;iRNA_m5C:0.999536712157786 32762 chr7 128478854 128478854 1 + G A SKCM 128478838 + 128478818 128478858 41 CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGAAAGG < 41bp 1 0.0564173367999876 1 0.0329538881778717 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128478838 chr7:128478854 nonsynonymous SNV 0.961 1 37 hm5C_associated_SNPs_32809 0 0 1 0 1 chromatin 1 0.500231643916999 1 0.999536712166003 hm5C_site_32762 DeepMRMD:1;iRNA_m5C:0.999536712166003 32763 chr3 123348395 123348395 1 + G A SKCM 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCAAAGT < 41bp 1 0.513159599811284 1 0.26999232172966 experiment 0.973680800377432 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348395 synonymous SNV . 0 37 hm5C_associated_SNPs_32810 0 0 0 0 1 Cytosol 1 0.500312246263182 1 0.999375507473635 hm5C_site_32763 DeepMRMD:1;iRNA_m5C:0.999375507473635 32764 chr7 116371900 116371900 1 + G A SKCM 116371902 + 116371882 116371922 41 ATCTTGGGACATCAGAGGGTCGCTTCATGCAGGTAAGTGCT ATCTTGGGACATCAGAGGATCGCTTCATGCAGGTAAGTGCT < 41bp 1 0.253262198191103 1 0.0819669365882874 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MET ENSG00000105976 CDS Human protein_coding chr7:116371902 chr7:116371900 nonsynonymous SNV 0.998 4 19 hm5C_associated_SNPs_32811 0 0 1 0 1 Cytosol 1 0.500231644999508 1 0.999536710000985 hm5C_site_32764 DeepMRMD:1;iRNA_m5C:0.999536710000985 32765 chr17 4926878 4926878 1 + C T SKCM 4926871 + 4926851 4926891 41 ACCGCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCA ACCGCATGCCGTCAGCCCGGCCCCCCTTGCCACCACTGTCA < 41bp 1 0.0679295578147425 1 0.0209836065769196 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926871 chr17:4926878 nonsynonymous SNV 0.137 1 28 hm5C_associated_SNPs_32812 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32765 DeepMRMD:1;iRNA_m5C:0.999536712157815 32766 chr17 4926878 4926878 1 + C T SKCM 4926874 + 4926854 4926894 41 GCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGC GCATGCCGTCAGCCCGGCCCCCCTTGCCACCACTGTCAAGC < 41bp 1 0.119239950202512 1 0.0242152512073517 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926874 chr17:4926878 nonsynonymous SNV 0.137 1 25 hm5C_associated_SNPs_32813 0 0 1 0 0 Ribosome 1 0.500231699086615 1 0.99953660182677 hm5C_site_32766 DeepMRMD:1;iRNA_m5C:0.99953660182677 32767 chr17 4926878 4926878 1 + C T SKCM 4926880 + 4926860 4926900 41 CGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAG CGTCAGCCCGGCCCCCCTTGCCACCACTGTCAAGCTGGGAG < 41bp 1 0.0890287469771412 1 0.112455427646637 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926880 chr17:4926878 nonsynonymous SNV 0.137 1 19 hm5C_associated_SNPs_32814 0 0 1 0 0 Ribosome 1 0.500231643929086 1 0.999536712141827 hm5C_site_32767 DeepMRMD:1;iRNA_m5C:0.999536712141827 32768 chr17 4926878 4926878 1 + C T SKCM 4926883 + 4926863 4926903 41 CAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAGCGG CAGCCCGGCCCCCCTTGCCACCACTGTCAAGCTGGGAGCGG < 41bp 1 0.165167392489887 1 0.0617383718490601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926883 chr17:4926878 nonsynonymous SNV 0.137 1 16 hm5C_associated_SNPs_32815 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32768 DeepMRMD:1;iRNA_m5C:0.999536712157815 32769 chr19 24010424 24010424 1 + T G SKCM 24010418 + 24010398 24010438 41 TGCGCTGTGTAACACAGATTCTCCTCTGCGCTATGTGGACA TGCGCTGTGTAACACAGATTCTCCTCGGCGCTATGTGGACA < 41bp 1 0.495683985808126 1 0.0570714473724365 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010418 chr19:24010424 nonsynonymous SNV 0.993 3 27 hm5C_associated_SNPs_32816 0 0 0 0 0 Cytosol 1 0.500231634666471 1 0.999536730667058 hm5C_site_32769 DeepMRMD:1;iRNA_m5C:0.999536730667058 32770 chr19 24010424 24010424 1 + T G SKCM 24010423 + 24010403 24010443 41 TGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCC TGTGTAACACAGATTCTCCTCGGCGCTATGTGGACATTGCC < 41bp 1 0.594859566464892 1 0.190977960824966 experiment 0.810280867070216 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010423 chr19:24010424 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_32817 0 0 0 0 0 Cytosol 1 0.500231848537003 1 0.999536302925994 hm5C_site_32770 DeepMRMD:1;iRNA_m5C:0.999536302925994 32771 chr12 79689912 79689912 1 + C T SKCM 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CGCCTTGGACATGGGGGGCACATCTGATTCTTACGTGAAAG < 41bp 1 0.185013135295645 1 0.225269079208374 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689912 nonsynonymous SNV 0.997 4 29 hm5C_associated_SNPs_32818 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32771 DeepMRMD:1;iRNA_m5C:0.999536712157815 32772 chr7 94917927 94917927 1 + C T SKCM 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCAGGAATGGAGTGTGCAGCAGGTTTTTCACTGGTTA < 41bp 1 0.52455158342193 1 0.135850429534912 experiment 0.95089683315614 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917927 nonsynonymous SNV 0.984 5 31 hm5C_associated_SNPs_32819 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32772 DeepMRMD:1;iRNA_m5C:0.999536712157815 32773 chr4 79173607 79173607 1 + G A SKCM 79173606 + 79173586 79173626 41 CTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC CTTGCAATCATGGGGAAGTCCAATGTACCCCCCAACCATGC < 41bp 1 0.169577628511131 1 0.217933356761932 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79173606 chr4:79173607 nonsynonymous SNV 0.161 0 22 hm5C_associated_SNPs_32820 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_32773 DeepMRMD:1;iRNA_m5C:0.999536712157816 32774 chr22 18567993 18567993 1 + C T SKCM 18567978 + 18567958 18567998 41 CTGCCCTTCAAAAAGAGTCTCCTGGCTGCCTTGATCCTCTG CTGCCCTTCAAAAAGAGTCTCCTGGCTGCCTTGATTCTCTG < 41bp 1 0.158491861540422 1 0.0920565128326416 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX26 ENSG00000215193 CDS Human protein_coding chr22:18567978 chr22:18567993 synonymous SNV . 0 36 hm5C_associated_SNPs_32821 0 0 1 0 1 Ribosome 1 0.500231643921042 1 0.999536712157916 hm5C_site_32774 DeepMRMD:1;iRNA_m5C:0.999536712157916 32775 chr21 47831454 47831454 1 + C G SKCM 47831434 + 47831414 47831454 41 GGAGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGC GGAGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGG < 41bp 1 0.107092937327721 1 0.175907820463181 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831434 chr21:47831454 nonsynonymous SNV 0.745 1 41 hm5C_associated_SNPs_32822 0 0 0 0 0 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32775 DeepMRMD:1;iRNA_m5C:0.999536712157815 32776 chr21 47831454 47831454 1 + C G SKCM 47831435 + 47831415 47831455 41 GAGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGCG GAGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGGG < 41bp 1 0.16086619066037 1 0.367980420589447 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831435 chr21:47831454 nonsynonymous SNV 0.745 1 40 hm5C_associated_SNPs_32823 0 0 0 0 0 Exosome 1 0.500231643223095 1 0.999536713553811 hm5C_site_32776 DeepMRMD:1;iRNA_m5C:0.999536713553811 32777 chr21 47831454 47831454 1 + C G SKCM 47831436 + 47831416 47831456 41 AGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGCGC AGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGGGC < 41bp 1 0.661381283588271 1 0.598519265651703 experiment 0.677237432823458 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831436 chr21:47831454 nonsynonymous SNV 0.745 1 39 hm5C_associated_SNPs_32824 0 0 0 0 0 Exosome 1 0.500231643921093 0.802961468696594 0.999536712157815 hm5C_site_32777 DeepMRMD:0.802961468696594;iRNA_m5C:0.999536712157815 32778 chr21 47831454 47831454 1 + C G SKCM 47831443 + 47831423 47831463 41 GCACAGCCAGGCCCTGGAGGCCCTGCAGCAGCGCCTCCAGG GCACAGCCAGGCCCTGGAGGCCCTGCAGCAGGGCCTCCAGG < 41bp 1 0.0693901882763165 1 0.127174705266953 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831443 chr21:47831454 nonsynonymous SNV 0.745 1 32 hm5C_associated_SNPs_32825 0 0 0 0 0 Exosome 1 0.500231643985517 1 0.999536712028966 hm5C_site_32778 DeepMRMD:1;iRNA_m5C:0.999536712028966 32779 chr21 47831454 47831454 1 + C G SKCM 47831456 + 47831436 47831476 41 CTGGAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGC CTGGAGGCCCTGCAGCAGGGCCTCCAGGGCGCAGAGGAGGC < 41bp 1 0.0120068006284325 1 0.134630233049393 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831456 chr21:47831454 nonsynonymous SNV 0.745 1 19 hm5C_associated_SNPs_32826 0 0 0 0 0 Exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_32779 DeepMRMD:1;iRNA_m5C:0.999536712157815 32780 chr21 47831454 47831454 1 + C G SKCM 47831457 + 47831437 47831477 41 TGGAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCT TGGAGGCCCTGCAGCAGGGCCTCCAGGGCGCAGAGGAGGCT < 41bp 1 0.311678174597703 1 0.900509297847748 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831457 chr21:47831454 nonsynonymous SNV 0.745 1 18 hm5C_associated_SNPs_32827 0 0 0 0 0 Exosome 1 0.500231643921093 0.198981404304504 0.999536712157815 hm5C_site_32780 DeepMRMD:0.198981404304504;iRNA_m5C:0.999536712157815 32781 chr21 47831454 47831454 1 + C G SKCM 47831459 + 47831439 47831479 41 GAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGC GAGGCCCTGCAGCAGGGCCTCCAGGGCGCAGAGGAGGCTGC < 41bp 1 0.244494579855549 1 0.742056727409363 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831459 chr21:47831454 nonsynonymous SNV 0.745 1 16 hm5C_associated_SNPs_32828 0 0 0 0 0 Exosome 1 0.500231643922474 0.515886545181274 0.999536712155051 hm5C_site_32781 DeepMRMD:0.515886545181274;iRNA_m5C:0.999536712155051 32782 chr21 47831454 47831454 1 + C G SKCM 47831460 + 47831440 47831480 41 AGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCG AGGCCCTGCAGCAGGGCCTCCAGGGCGCAGAGGAGGCTGCG < 41bp 1 0.421096986688879 1 0.859052717685699 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831460 chr21:47831454 nonsynonymous SNV 0.745 1 15 hm5C_associated_SNPs_32829 0 0 0 0 0 Exosome 1 0.500231643936885 0.281894564628602 0.999536712126231 hm5C_site_32782 DeepMRMD:0.281894564628602;iRNA_m5C:0.999536712126231 32783 chr21 47831454 47831454 1 + C G SKCM 47831465 + 47831445 47831485 41 CTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCGGAGCT CTGCAGCAGGGCCTCCAGGGCGCAGAGGAGGCTGCGGAGCT < 41bp 1 0.287972046571971 1 0.525743365287781 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831465 chr21:47831454 nonsynonymous SNV 0.745 1 10 hm5C_associated_SNPs_32830 0 0 0 0 0 Exosome 1 0.500231643751214 0.948513269424438 0.999536712497573 hm5C_site_32783 DeepMRMD:0.948513269424438;iRNA_m5C:0.999536712497573 32784 chr21 47831449 47831449 1 + A T SKCM 47831434 + 47831414 47831454 41 GGAGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGC GGAGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCTGCAGC < 41bp 1 0.109034566206584 1 0.106423527002335 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831434 chr21:47831449 nonsynonymous SNV 0.995 1 36 hm5C_associated_SNPs_32831 0 0 0 0 0 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32784 DeepMRMD:1;iRNA_m5C:0.999536712157815 32785 chr21 47831449 47831449 1 + A T SKCM 47831435 + 47831415 47831455 41 GAGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCAGCAGCG GAGCGCAGGCACAGCCAGGCCCTGGAGGCCCTGCTGCAGCG < 41bp 1 0.179392150919675 1 0.363357424736023 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831435 chr21:47831449 nonsynonymous SNV 0.995 1 35 hm5C_associated_SNPs_32832 0 0 0 0 0 Exosome 1 0.500231507920039 1 0.999536984159923 hm5C_site_32785 DeepMRMD:1;iRNA_m5C:0.999536984159923 32786 chr21 47831449 47831449 1 + A T SKCM 47831443 + 47831423 47831463 41 GCACAGCCAGGCCCTGGAGGCCCTGCAGCAGCGCCTCCAGG GCACAGCCAGGCCCTGGAGGCCCTGCTGCAGCGCCTCCAGG < 41bp 1 0.0751452409398452 1 0.0416461229324341 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831443 chr21:47831449 nonsynonymous SNV 0.995 1 27 hm5C_associated_SNPs_32834 0 0 0 0 0 Exosome 1 0.500231644525931 1 0.999536710948138 hm5C_site_32786 DeepMRMD:1;iRNA_m5C:0.999536710948138 32787 chr21 47831449 47831449 1 + A T SKCM 47831456 + 47831436 47831476 41 CTGGAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGC CTGGAGGCCCTGCTGCAGCGCCTCCAGGGCGCAGAGGAGGC < 41bp 1 0.0154006227809123 1 0.183744966983795 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831456 chr21:47831449 nonsynonymous SNV 0.995 1 14 hm5C_associated_SNPs_32835 0 0 0 0 0 Exosome 1 0.500231643923474 1 0.999536712153053 hm5C_site_32787 DeepMRMD:1;iRNA_m5C:0.999536712153053 32788 chr21 47831449 47831449 1 + A T SKCM 47831457 + 47831437 47831477 41 TGGAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCT TGGAGGCCCTGCTGCAGCGCCTCCAGGGCGCAGAGGAGGCT < 41bp 1 0.335515177453871 1 0.880749225616455 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831457 chr21:47831449 nonsynonymous SNV 0.995 1 13 hm5C_associated_SNPs_32836 0 0 0 0 0 Exosome 1 0.500231643815059 0.23850154876709 0.999536712369883 hm5C_site_32788 DeepMRMD:0.23850154876709;iRNA_m5C:0.999536712369883 32789 chr21 47831449 47831449 1 + A T SKCM 47831459 + 47831439 47831479 41 GAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGC GAGGCCCTGCTGCAGCGCCTCCAGGGCGCAGAGGAGGCTGC < 41bp 1 0.2265612952967 1 0.7760249376297 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831459 chr21:47831449 nonsynonymous SNV 0.995 1 11 hm5C_associated_SNPs_32837 0 0 0 0 0 Exosome 1 0.500231643921091 0.4479501247406 0.999536712157818 hm5C_site_32789 DeepMRMD:0.4479501247406;iRNA_m5C:0.999536712157818 32790 chr21 47831449 47831449 1 + A T SKCM 47831460 + 47831440 47831480 41 AGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCG AGGCCCTGCTGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCG < 41bp 1 0.454934860924987 1 0.882984161376953 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831460 chr21:47831449 nonsynonymous SNV 0.995 1 10 hm5C_associated_SNPs_32838 0 0 0 0 0 Exosome 1 0.500231643914188 0.234031677246094 0.999536712171624 hm5C_site_32790 DeepMRMD:0.234031677246094;iRNA_m5C:0.999536712171624 32791 chr21 47831449 47831449 1 + A T SKCM 47831465 + 47831445 47831485 41 CTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCGGAGCT CTGCTGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCGGAGCT < 41bp 1 0.239195493870628 1 0.487513870000839 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831465 chr21:47831449 nonsynonymous SNV 0.995 1 5 hm5C_associated_SNPs_32839 0 0 0 0 0 Exosome 1 0.500231644054779 1 0.999536711890442 hm5C_site_32791 DeepMRMD:1;iRNA_m5C:0.999536711890442 32792 chr8 28574495 28574495 1 + C T SKCM 28574488 + 28574468 28574508 41 GTGGCCCAGTCCACCTTCTACACTGTCCAGTACAGACCTGG GTGGCCCAGTCCACCTTCTACACTGTCTAGTACAGACCTGG < 41bp 1 0.200335059260419 1 0.18260195851326 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28574488 chr8:28574495 stopgain 0.980 1 28 hm5C_associated_SNPs_32840 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643917949 1 0.999536712164101 hm5C_site_32792 DeepMRMD:1;iRNA_m5C:0.999536712164101 32793 chr1 92495805 92495805 1 + G A SKCM 92495811 + 92495791 92495831 41 GGCGGCCCGCCCGGGAGCACCCTCCCGCGTGCCTGAGCGAC GGCGGCCCGCCCGGAAGCACCCTCCCGCGTGCCTGAGCGAC < 41bp 1 0.29158491788409 1 0.211022347211838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92495811 chr1:92495805 nonsynonymous SNV 0.326 1 15 hm5C_associated_SNPs_32842 0 0 0 0 1 exosome 1 0.500231643925294 1 0.999536712149412 hm5C_site_32793 DeepMRMD:1;iRNA_m5C:0.999536712149412 32794 chr15 52356175 52356175 1 + C T SKCM 52356166 + 52356146 52356186 41 ACTTTGATATTGATGAAGTTCAGCTTGATCCAAGAGCTCTG ACTTTGATATTGATGAAGTTCAGCTTGATTCAAGAGCTCTG < 41bp 1 0.584323652134519 1 0.187166661024094 experiment 0.831352695730962 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356166 chr15:52356175 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_32843 0 0 1 0 1 Ribosome 1 0.500231661987108 1 0.999536676025785 hm5C_site_32794 DeepMRMD:1;iRNA_m5C:0.999536676025785 32795 chr22 32217491 32217491 1 + C T SKCM 32217507 + 32217487 32217527 41 GGGCCATCCGGAGAAGCCATCCAGATCCACCACCAGACCCG GGGCTATCCGGAGAAGCCATCCAGATCCACCACCAGACCCG < 41bp 1 0.562921491606182 1 0.525304734706879 experiment 0.874157016787635 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32217507 chr22:32217491 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_32844 0 0 1 0 1 chromatin 1 0.500231643878928 0.949390530586242 0.999536712242145 hm5C_site_32795 DeepMRMD:0.949390530586242;iRNA_m5C:0.999536712242145 32796 chr15 75644680 75644680 1 + C T SKCM 75644692 + 75644672 75644712 41 ATCCCCCCCTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT ATCCCCCCTTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT < 41bp 1 0.146519445969863 1 0.0549529492855072 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75644692 chr15:75644680 synonymous SNV . 0 9 hm5C_associated_SNPs_32845 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32796 DeepMRMD:1;iRNA_m5C:0.999536712157815 32797 chr7 5269331 5269331 1 + G A SKCM 5269313 + 5269293 5269333 41 CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGGAA CTGCCCCTTAGTCACTCAGACATACGGCGCAGCTGCAGAAA < 41bp 1 0.116141277055206 1 0.0992255508899689 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269313 chr7:5269331 nonsynonymous SNV 0.017 0 39 hm5C_associated_SNPs_32846 0 0 1 0 3 Cytosol 1 0.500231883152544 1 0.999536233694913 hm5C_site_32797 DeepMRMD:1;iRNA_m5C:0.999536233694913 32798 chr17 900385 900385 1 + G A SKCM 900378 + 900358 900398 41 GAGGGTTGCTTGGGCAGCGACTGTCATGGCGGCGGCCGCCC GAGGGTTGCTTGGGCAGCGACTGTCATAGCGGCGGCCGCCC < 41bp 1 0.536017573527939 1 0.325056672096252 experiment 0.927964852944122 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TIMM22 ENSG00000177370 CDS Human protein_coding chr17:900378 chr17:900385 nonsynonymous SNV 0.841 1 28 hm5C_associated_SNPs_32847 0 0 1 0 0 Cytosol 1 0.50023164392121 1 0.999536712157579 hm5C_site_32798 DeepMRMD:1;iRNA_m5C:0.999536712157579 32799 chr2 32666457 32666457 1 + C T SKCM 32666438 + 32666418 32666458 41 AATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCCG AATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCTG < 41bp 1 0.0437275089420826 1 0.465450286865234 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32666438 chr2:32666457 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_32849 0 0 1 0 2 Nucleus 1 0.500231644914284 1 0.999536710171431 hm5C_site_32799 DeepMRMD:1;iRNA_m5C:0.999536710171431 32800 chr16 66919225 66919225 1 + G A SKCM 66919216 + 66919196 66919236 41 AGGCTACTGGGCGTCCTCATCCCCTGCAGGGCCTTTGGGGA AGGCTACTGGGCGTCCTCATCCCCTGCAGAGCCTTTGGGGA < 41bp 1 0.449121632592147 1 0.822261095046997 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDP2 ENSG00000172840 CDS Human protein_coding chr16:66919216 chr16:66919225 synonymous SNV . 0 30 hm5C_associated_SNPs_32850 0 0 1 0 0 nucleolus 1 0.500231643921092 0.355477809906006 0.999536712157815 hm5C_site_32800 DeepMRMD:0.355477809906006;iRNA_m5C:0.999536712157815 32801 chr7 100484522 100484522 1 + C T SKCM 100484519 + 100484499 100484539 41 GGGGAGCAGCGGGGGCGCTCCTCCTGAGGAGCCTCCTAAGG GGGGAGCAGCGGGGGCGCTCCTCTTGAGGAGCCTCCTAAGG < 41bp 1 0.450102154738825 1 0.368268579244614 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100484519 chr7:100484522 nonsynonymous SNV 0.560 0 24 hm5C_associated_SNPs_32852 0 0 1 0 1 Nucleus 1 0.500231643920633 1 0.999536712158733 hm5C_site_32801 DeepMRMD:1;iRNA_m5C:0.999536712158733 32802 chr12 21205097 21205097 1 + G A SKCM 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATAAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT < 41bp 1 0.391813895157055 1 0.169859766960144 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205097 nonsynonymous SNV 0.803 0 4 hm5C_associated_SNPs_32853 0 0 0 0 2 nucleus 1 0.500231643920611 1 0.999536712158778 hm5C_site_32802 DeepMRMD:1;iRNA_m5C:0.999536712158778 32803 chr22 18028387 18028387 1 + C T SKCM 18028370 + 18028350 18028390 41 GAGTACCCGAATTCAGCTGCCCATTACCACATCAGTCCAGG GAGTACCCGAATTCAGCTGCCCATTACCACATCAGTCTAGG < 41bp 1 0.0284969111783908 1 0.0398381352424622 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CECR2 ENSG00000099954 CDS Human protein_coding chr22:18028370 chr22:18028387 nonsynonymous SNV 0.002 2 38 hm5C_associated_SNPs_32854 0 0 0 0 0 nucleoplasm 1 0.500231643920995 1 0.999536712158011 hm5C_site_32803 DeepMRMD:1;iRNA_m5C:0.999536712158011 32804 chr13 111147733 111147733 1 + G A SKCM 111147745 + 111147725 111147765 41 CTCCTGGGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTT CTCCTGGGAAAAGAGGTGACCCAGGAGAGGCCAACACCCTT < 41bp 1 0.168519422380266 1 0.429776519536972 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111147745 chr13:111147733 nonsynonymous SNV 0.051 3 9 hm5C_associated_SNPs_32856 0 0 0 0 2 Cytosol 1 0.500231561421651 1 0.999536877156698 hm5C_site_32804 DeepMRMD:1;iRNA_m5C:0.999536877156698 32805 chr17 40936554 40936554 1 + C T SKCM 40936572 + 40936552 40936592 41 CTCCGAGTGCCAGAATGCCGCGCAAATCTACCGCAAGGTCA CTTCGAGTGCCAGAATGCCGCGCAAATCTACCGCAAGGTCA < 41bp 1 0.659565818150963 1 0.2041055560112 experiment 0.680868363698074 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936572 chr17:40936554 nonsynonymous SNV 0.938 4 3 hm5C_associated_SNPs_32857 0 0 1 0 1 chromatin 1 0.500234195723927 1 0.999531608552147 hm5C_site_32805 DeepMRMD:1;iRNA_m5C:0.999531608552147 32806 chr1 87805770 87805770 1 + G T SKCM 87805775 + 87805755 87805795 41 ATCGCCTGGTCCCGGGAGATCGGTTTCACTACATCAATGGC ATCGCCTGGTCCCGGTAGATCGGTTTCACTACATCAATGGC < 41bp 1 0.370436967923982 1 0.183297544717789 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMO4 ENSG00000143013 CDS Human protein_coding chr1:87805775 chr1:87805770 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_32858 0 0 1 0 0 Ribosome 1 0.500231644008416 1 0.999536711983168 hm5C_site_32806 DeepMRMD:1;iRNA_m5C:0.999536711983168 32807 chr1 44433324 44433324 1 + C T SKCM 44433322 + 44433302 44433342 41 TCACACTGCTGTGCCGGGGTCTCCATGGCACAGATTACACA TCACACTGCTGTGCCGGGGTCTTCATGGCACAGATTACACA < 41bp 1 0.416857754960035 1 0.234738826751709 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control IPO13 ENSG00000117408 CDS Human protein_coding chr1:44433322 chr1:44433324 synonymous SNV . 0 23 hm5C_associated_SNPs_32859 0 0 1 0 1 Ribosome 1 0.500231643571784 1 0.999536712856432 hm5C_site_32807 DeepMRMD:1;iRNA_m5C:0.999536712856432 32808 chr17 29325795 29325795 1 + G A SKCM 29325807 + 29325787 29325827 41 AGCTGTGAGAGGTTTTCTACCAGCCAGGTCTTATGTTCCCA AGCTGTGAAAGGTTTTCTACCAGCCAGGTCTTATGTTCCCA < 41bp 1 0.48909627671591 1 0.208471417427063 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF135 ENSG00000181481 CDS Human protein_coding chr17:29325807 chr17:29325795 synonymous SNV . 0 9 hm5C_associated_SNPs_32860 0 0 1 1 0 Ribosome 1 0.500231643920839 1 0.999536712158322 hm5C_site_32808 DeepMRMD:1;iRNA_m5C:0.999536712158322 32809 chr7 156746923 156746923 1 + C T SKCM 156746911 + 156746891 156746931 41 GCTCTCATGGGTGCCTGCGTCACTGCCTCGGCCATGCCCAG GCTCTCATGGGTGCCTGCGTCACTGCCTCGGCTATGCCCAG < 41bp 1 0.57019491897992 1 0.528562724590302 experiment 0.85961016204016 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOM1 ENSG00000146909 CDS Human protein_coding chr7:156746911 chr7:156746923 synonymous SNV . 0 33 hm5C_associated_SNPs_32861 0 0 1 0 1 Nucleus 1 0.500231643921097 0.942874550819396 0.999536712157805 hm5C_site_32809 DeepMRMD:0.942874550819396;iRNA_m5C:0.999536712157805 32810 chr10 12191670 12191670 1 + C T SKCM 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATTATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT < 41bp 1 0.524950813923404 1 0.052834153175354 experiment 0.950098372153192 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191670 synonymous SNV . 0 4 hm5C_associated_SNPs_32862 0 0 1 0 2 Ribosome 1 0.500231643902984 1 0.999536712194032 hm5C_site_32810 DeepMRMD:1;iRNA_m5C:0.999536712194032 32811 chr1 32620246 32620246 1 + C T SKCM 32620232 + 32620212 32620252 41 GACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA GACAATTATCGAATGAAGAGCTATAAGAACAATGTTCTAAA < 41bp 1 0.215985578304445 1 0.40153631567955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620232 chr1:32620246 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_32863 0 0 1 0 2 Cytosol 1 0.500231639645962 1 0.999536720708075 hm5C_site_32811 DeepMRMD:1;iRNA_m5C:0.999536720708075 32812 chr1 32620246 32620246 1 + C T SKCM 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATGTTCTAAACCCTGAAGAAATGAGA < 41bp 1 0.268146940854477 1 0.274502277374268 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620246 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_32864 0 0 1 0 2 Cytosol 1 0.50023164382423 1 0.99953671235154 hm5C_site_32812 DeepMRMD:1;iRNA_m5C:0.99953671235154 32813 chr1 32620246 32620246 1 + C T SKCM 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGTTCTAAACCCTGAAGAAATGAGACGAAG < 41bp 1 0.203829250054935 1 0.0966490805149078 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620246 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_32865 0 0 1 0 2 Cytosol 1 0.500231643907295 1 0.99953671218541 hm5C_site_32813 DeepMRMD:1;iRNA_m5C:0.99953671218541 32814 chr1 32620246 32620246 1 + C T SKCM 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGTTCTAAACCCTGAAGAAATGAGACGAAGA < 41bp 1 0.265482791358457 1 0.169824749231339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620246 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_32866 0 0 1 0 2 Cytosol 1 0.500234119552434 1 0.999531760895132 hm5C_site_32814 DeepMRMD:1;iRNA_m5C:0.999531760895132 32815 chr11 67052452 67052452 1 + C T SKCM 67052439 + 67052419 67052459 41 AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCTCGGTAAG < 41bp 1 0.658055344677013 1 0.859665274620056 experiment 0.683889310645974 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052439 chr11:67052452 nonsynonymous SNV 0.997 1 34 hm5C_associated_SNPs_32868 0 0 1 0 1 chromatin 1 0.500231643921092 0.280669450759888 0.999536712157815 hm5C_site_32815 DeepMRMD:0.280669450759888;iRNA_m5C:0.999536712157815 32816 chr11 67052452 67052452 1 + C T SKCM 67052450 + 67052430 67052470 41 GTGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG GTGGCGGGGCGAGGGCGAGGCCTCGGTAAGGAGCCCGTGCG < 41bp 1 0.253750034212103 1 0.690619349479675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052450 chr11:67052452 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_32869 0 0 1 0 1 chromatin 1 0.500231643921009 0.61876130104065 0.999536712157983 hm5C_site_32816 DeepMRMD:0.61876130104065;iRNA_m5C:0.999536712157983 32817 chrX 73045886 73045886 1 + C T SKCM 73045871 - 73045851 73045891 41 CCTGGGACAAAGCGAGGTCCCAAGGGGACAGCCTGAACTCC CCTGGAACAAAGCGAGGTCCCAAGGGGACAGCCTGAACTCC < 41bp 1 0.67765061841929 1 0.880997180938721 experiment 0.64469876316142 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045871 chrX:73045886 . . 0 6 hm5C_associated_SNPs_32870 0 0 1 0 0 unknown 1 0.500231643921092 0.238005638122558 0.999536712157815 hm5C_site_32817 DeepMRMD:0.238005638122558;iRNA_m5C:0.999536712157815 32818 chrX 73045886 73045886 1 + C T SKCM 73045873 - 73045853 73045893 41 TGCCTGGGACAAAGCGAGGTCCCAAGGGGACAGCCTGAACT TGCCTGGAACAAAGCGAGGTCCCAAGGGGACAGCCTGAACT < 41bp 1 0.207294889107779 1 0.340099573135376 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045873 chrX:73045886 . . 0 8 hm5C_associated_SNPs_32871 0 0 1 0 0 unknown 1 0.500231643804324 1 0.999536712391353 hm5C_site_32818 DeepMRMD:1;iRNA_m5C:0.999536712391353 32819 chrX 73045886 73045886 1 + C T SKCM 73045891 - 73045871 73045911 41 TTATGGAAAGGGTGACTGTGCCTGGGACAAAGCGAGGTCCC TTATGGAAAGGGTGACTGTGCCTGGAACAAAGCGAGGTCCC < 41bp 1 0.264857632713552 1 0.288152903318405 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045891 chrX:73045886 . . 0 26 hm5C_associated_SNPs_32873 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157817 hm5C_site_32819 DeepMRMD:1;iRNA_m5C:0.999536712157817 32820 chrX 73045886 73045886 1 + C T SKCM 73045896 - 73045876 73045916 41 GATGGTTATGGAAAGGGTGACTGTGCCTGGGACAAAGCGAG GATGGTTATGGAAAGGGTGACTGTGCCTGGAACAAAGCGAG < 41bp 1 0.245614224609684 1 0.209456890821457 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045896 chrX:73045886 . . 0 31 hm5C_associated_SNPs_32874 0 0 1 0 0 unknown 1 0.500231644443019 1 0.999536711113962 hm5C_site_32820 DeepMRMD:1;iRNA_m5C:0.999536711113962 32821 chr14 75247117 75247117 1 + C T SKCM 75247109 + 75247089 75247129 41 TGTCCTCTTTTATCTTTAGTCTGAGGACCCAGAAGAAGATG TGTCCTCTTTTATCTTTAGTCTGAGGACTCAGAAGAAGATG < 41bp 1 0.470955937381939 1 0.57405424118042 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75247109 chr14:75247117 nonsynonymous SNV 0.994 0 29 hm5C_associated_SNPs_32875 0 0 1 0 1 Cytosol 1 0.500228821820422 0.85189151763916 0.999542356359157 hm5C_site_32821 DeepMRMD:0.85189151763916;iRNA_m5C:0.999542356359157 32822 chr17 7156241 7156241 1 + G T SKCM 7156261 + 7156241 7156281 41 GAGCAAGTGCATATCCTGGGCTGTGAAGTGAGCGAGGAAGA TAGCAAGTGCATATCCTGGGCTGTGAAGTGAGCGAGGAAGA < 41bp 1 0.238048647688632 1 0.0659825503826141 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ELP5 ENSG00000170291 CDS Human protein_coding chr17:7156261 chr17:7156241 stopgain 0.997 1 1 hm5C_associated_SNPs_32876 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32822 DeepMRMD:1;iRNA_m5C:0.999536712157815 32823 chr18 55996240 55996240 1 + G A SKCM 55996248 + 55996228 55996268 41 GACGTGTCCTCGGAGTCGGACAATAACATCAGACAGATCAA GACGTGTCCTCGAAGTCGGACAATAACATCAGACAGATCAA < 41bp 1 0.21908453804008 1 0.143678903579712 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:55996248 chr18:55996240 nonsynonymous SNV 0.611 1 13 hm5C_associated_SNPs_32877 0 0 1 0 1 Cytosol 1 0.499828340172691 1 1 hm5C_site_32823 DeepMRMD:1;iRNA_m5C:1 32824 chr11 67047159 67047159 1 + G A SKCM 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGGTGCCTCCAGATCTCTTCCAGGTGTGTGCCTCC < 41bp 1 0.205179768452573 1 0.695061385631561 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047159 synonymous SNV . 0 17 hm5C_associated_SNPs_32879 0 0 1 0 2 chromatin 1 0.500231643921092 0.609877228736878 0.999536712157816 hm5C_site_32824 DeepMRMD:0.609877228736878;iRNA_m5C:0.999536712157816 32825 chr6 29976015 29976015 1 + T C SKCM 29976024 + 29976004 29976044 41 AACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACC AACATGAGGCACAACGAGGTCCTGGGTTCTGGGCTTCTACC < 41bp 1 0.209202092261789 1 0.374265551567078 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976024 chr6:29976015 . . 0 12 hm5C_associated_SNPs_32880 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_32825 DeepMRMD:1;iRNA_m5C:0.999536712157815 32826 chr6 29976015 29976015 1 + T C SKCM 29976025 + 29976005 29976045 41 ACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACCC ACATGAGGCACAACGAGGTCCTGGGTTCTGGGCTTCTACCC < 41bp 1 0.534381387690077 1 0.500585615634918 experiment 0.931237224619847 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976025 chr6:29976015 . . 0 11 hm5C_associated_SNPs_32881 0 0 0 0 1 unknown 1 0.500231643916108 0.998828768730164 0.999536712167783 hm5C_site_32826 DeepMRMD:0.998828768730164;iRNA_m5C:0.999536712167783 32827 chr1 46827414 46827414 1 + A T SKCM 46827413 + 46827393 46827433 41 TTCCGAAGGGTTTTCATGGACACATTTTGTTTCTTCTCATC TTCCGAAGGGTTTTCATGGACTCATTTTGTTTCTTCTCATC < 41bp 1 0.409449106448993 1 0.0588441491127014 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NSUN4 ENSG00000117481 CDS Human protein_coding chr1:46827413 chr1:46827414 nonsynonymous SNV 0.988 3 22 hm5C_associated_SNPs_32883 0 0 1 0 0 Cytosol 1 0.500231586672829 1 0.999536826654342 hm5C_site_32827 DeepMRMD:1;iRNA_m5C:0.999536826654342 32828 chr22 38028055 38028055 1 + C T SKCM 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TTCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG < 41bp 1 0.399991207083228 1 0.0772422850131989 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028055 synonymous SNV . 0 2 hm5C_associated_SNPs_32884 0 0 1 0 1 chromatin 1 0.500231644019179 1 0.999536711961641 hm5C_site_32828 DeepMRMD:1;iRNA_m5C:0.999536711961641 32829 chr1 26135082 26135082 1 + C T SKCM 26135073 + 26135053 26135093 41 TGCTTTCCCCCGCCCCAGGTCTCCCGCCTCGCCCTGTCCGG TGCTTTCCCCCGCCCCAGGTCTCCCGCCTTGCCCTGTCCGG < 41bp 1 0.222853311435864 1 0.137001544237137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26135073 chr1:26135082 synonymous SNV . 0 30 hm5C_associated_SNPs_32885 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_32829 DeepMRMD:1;iRNA_m5C:0.999536712157815 32830 chr22 38321969 38321969 1 + C T SKCM 38321955 + 38321935 38321975 41 GGGCCACCCGGAGTCCACACCCAAGTCCCTGCACCCCTGGT GGGCCACCCGGAGTCCACACCCAAGTCCCTGCACTCCTGGT < 41bp 1 0.157784989609846 1 0.151796072721481 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38321955 chr22:38321969 nonsynonymous SNV 0.998 4 35 hm5C_associated_SNPs_32886 0 0 0 0 1 Ribosome 1 0.500231592569482 1 0.999536814861036 hm5C_site_32830 DeepMRMD:1;iRNA_m5C:0.999536814861036 32831 chr19 10940894 10940894 1 + C T SKCM 10940900 + 10940880 10940920 41 GGCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCC GGCCCCCCCTGATTTCTGTTCCCGTGGGGGCAGCAGCCTCC < 41bp 1 0.392927656776533 1 0.23285299539566 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940900 chr19:10940894 nonsynonymous SNV 0.826 4 15 hm5C_associated_SNPs_32887 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32831 DeepMRMD:1;iRNA_m5C:0.999536712157815 32832 chr19 10940894 10940894 1 + C T SKCM 10940901 + 10940881 10940921 41 GCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCCT GCCCCCCCTGATTTCTGTTCCCGTGGGGGCAGCAGCCTCCT < 41bp 1 0.284100510054914 1 0.266338586807251 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940901 chr19:10940894 nonsynonymous SNV 0.826 4 14 hm5C_associated_SNPs_32888 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32832 DeepMRMD:1;iRNA_m5C:0.999536712157815 32833 chr16 77232127 77232127 1 + T C SKCM 77232113 + 77232093 77232133 41 GGGTGAAGAAAGAGGAGGACCGGCTCTTCATTCGTTACCCA GGGTGAAGAAAGAGGAGGACCGGCTCTTCATTCGCTACCCA < 41bp 1 0.551184372939545 1 0.171361237764359 experiment 0.89763125412091 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MON1B ENSG00000103111 CDS Human protein_coding chr16:77232113 chr16:77232127 synonymous SNV . 0 35 hm5C_associated_SNPs_32889 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32833 DeepMRMD:1;iRNA_m5C:0.999536712157815 32834 chr7 99621867 99621867 1 + C T SKCM 99621875 + 99621855 99621895 41 TTTGACCTTCATCACGAGGCCACCCAGTCCCACTTCAAACA TTTGACCTTCATTACGAGGCCACCCAGTCCCACTTCAAACA < 41bp 1 0.251433194835891 1 0.050258070230484 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99621875 chr7:99621867 nonsynonymous SNV 0.994 0 13 hm5C_associated_SNPs_32890 0 0 1 0 2 Cytosol 1 0.500230598995707 1 0.999538802008586 hm5C_site_32834 DeepMRMD:1;iRNA_m5C:0.999538802008586 32835 chr17 47119686 47119686 1 + G A SKCM 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATCGAGAATTGTTGCAGGGCCGAGCAGAAAATAATGAAGA < 41bp 1 0.127981821794614 1 0.242724657058716 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119686 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_32891 0 0 1 0 1 Ribosome 1 0.500231643919142 1 0.999536712161717 hm5C_site_32835 DeepMRMD:1;iRNA_m5C:0.999536712161717 32836 chr17 47119686 47119686 1 + G A SKCM 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATCGAGAATTGTTGCAGGGCCGAGCAGAAAATAATGAAGAA < 41bp 1 0.318954943911688 1 0.383515655994415 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119686 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_32892 0 0 1 0 1 Ribosome 1 0.500231643922384 1 0.999536712155233 hm5C_site_32836 DeepMRMD:1;iRNA_m5C:0.999536712155233 32837 chr9 132618591 132618591 1 + C T SKCM 132618609 + 132618589 132618629 41 ACCTGTCAGTCGTGTGGGGTCACCGGACCAAACCTATGGGC ACTTGTCAGTCGTGTGGGGTCACCGGACCAAACCTATGGGC < 41bp 1 0.683444331949353 1 0.448285698890686 experiment 0.633111336101294 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132618609 chr9:132618591 synonymous SNV . 0 3 hm5C_associated_SNPs_32894 0 0 1 0 2 chromatin 1 0.50023187721165 1 0.9995362455767 hm5C_site_32837 DeepMRMD:1;iRNA_m5C:0.9995362455767 32838 chr7 128490101 128490101 1 + C T SKCM 128490107 + 128490087 128490127 41 CCCTACGCTCCTCCCCGGCCCGGCGCCCGCCCCACACACTG CCCTACGCTCCTCCTCGGCCCGGCGCCCGCCCCACACACTG < 41bp 1 0.378819110746742 1 0.350237876176834 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128490107 chr7:128490101 synonymous SNV . 0 15 hm5C_associated_SNPs_32896 0 0 0 0 2 chromatin 1 0.500231643975367 1 0.999536712049266 hm5C_site_32838 DeepMRMD:1;iRNA_m5C:0.999536712049266 32839 chr6 7572147 7572147 1 + G A SKCM 7572161 + 7572141 7572181 41 CCAACAGAGAAAATGACAAGCAAGAAACATGGATGCTGATG CCAACAAAGAAAATGACAAGCAAGAAACATGGATGCTGATG < 41bp 1 0.533182151009719 1 0.812922239303589 experiment 0.933635697980562 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572161 chr6:7572147 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_32897 0 0 1 0 1 Nucleus 1 0.500231643921092 0.374155521392822 0.999536712157815 hm5C_site_32839 DeepMRMD:0.374155521392822;iRNA_m5C:0.999536712157815 32840 chr11 14865471 14865471 1 + C T SKCM 14865490 + 14865470 14865510 41 TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA TTCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA < 41bp 1 0.407592997519868 1 0.815944075584412 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14865490 chr11:14865471 nonsynonymous SNV 0.978 3 2 hm5C_associated_SNPs_32899 0 0 1 0 1 chromatin 1 0.500231643921093 0.368111848831176 0.999536712157813 hm5C_site_32840 DeepMRMD:0.368111848831176;iRNA_m5C:0.999536712157813 32841 chr3 50005945 50005945 1 + C T SKCM 50005946 + 50005926 50005966 41 CTTTCAGAACAGCCAAAGTCCAGTTCAAGACCAAGATAAGT CTTTCAGAACAGCCAAAGTTCAGTTCAAGACCAAGATAAGT < 41bp 1 0.109558600356433 1 0.122590065002441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50005946 chr3:50005945 nonsynonymous SNV 0.993 0 20 hm5C_associated_SNPs_32900 0 0 1 2 0 Nucleus 1 0.500231603988905 1 0.999536792022189 hm5C_site_32841 DeepMRMD:1;iRNA_m5C:0.999536792022189 32842 chr14 102901109 102901109 1 + C T SKCM 102901100 + 102901080 102901120 41 CCCCCTCCTGAACTCACTCACTGTGCCTTCCAGCCTCAGCT CCCCCTCCTGAACTCACTCACTGTGCCTTTCAGCCTCAGCT < 41bp 1 0.124023185415159 1 0.120214104652405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102901100 chr14:102901109 nonsynonymous SNV 0.982 1 30 hm5C_associated_SNPs_32901 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32842 DeepMRMD:1;iRNA_m5C:0.999536712157815 32843 chr17 48156850 48156850 1 + C T SKCM 48156868 + 48156848 48156888 41 ATCCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCT ATTCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCT < 41bp 1 0.0739783437725174 1 0.204240560531616 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156868 chr17:48156850 nonsynonymous SNV 0.998 0 3 hm5C_associated_SNPs_32902 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32843 DeepMRMD:1;iRNA_m5C:0.999536712157815 32844 chr17 48156850 48156850 1 + C T SKCM 48156870 + 48156850 48156890 41 CCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC TCAGGGGGAGGCCAGGGCCCCCCACCTGTCACTCTGGCTGC < 41bp 1 0.124095373638066 1 0.136965811252594 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48156870 chr17:48156850 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_32903 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32844 DeepMRMD:1;iRNA_m5C:0.999536712157815 32845 chr1 114516050 114516050 1 + C T SKCM 114516043 + 114516023 114516063 41 GTACCAACACCAGTTTGCCACCCAATCCTACATTGGGTCTT GTACCAACACCAGTTTGCCACCCAATCTTACATTGGGTCTT < 41bp 1 0.315288027224684 1 0.15078192949295 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114516043 chr1:114516050 synonymous SNV . 0 28 hm5C_associated_SNPs_32904 0 0 1 0 0 Cytosol 1 0.500229725335911 1 0.999540549328178 hm5C_site_32845 DeepMRMD:1;iRNA_m5C:0.999540549328178 32846 chr13 26923281 26923281 1 + G C SKCM 26923264 + 26923244 26923284 41 TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGT TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGCTGT < 41bp 1 0.490142575132061 1 0.325766116380692 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26923264 chr13:26923281 nonsynonymous SNV 0.892 2 38 hm5C_associated_SNPs_32905 0 0 1 0 2 Cytosol 1 0.50023164382021 1 0.99953671235958 hm5C_site_32846 DeepMRMD:1;iRNA_m5C:0.99953671235958 32847 chr2 47221588 47221588 1 + G A SKCM 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC CATAGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC < 41bp 1 0.0744411433564257 1 0.0338680446147919 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221588 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_32906 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32847 DeepMRMD:1;iRNA_m5C:0.999536712157815 32848 chrX 150156315 150156315 1 + G A SKCM 150156311 + 150156291 150156331 41 AAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGG AAAGGGTCCTGCTAAAGTTGCCCGAAAAAAGGTGGAAGAGG < 41bp 1 0.623694986772869 1 0.17807924747467 experiment 0.752610026454261 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156311 chrX:150156315 synonymous SNV . 0 25 hm5C_associated_SNPs_32907 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32848 DeepMRMD:1;iRNA_m5C:0.999536712157815 32849 chrX 150156315 150156315 1 + G A SKCM 150156312 + 150156292 150156332 41 AAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA AAGGGTCCTGCTAAAGTTGCCCGAAAAAAGGTGGAAGAGGA < 41bp 1 0.426515736863068 1 0.532367885112762 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156312 chrX:150156315 synonymous SNV . 0 24 hm5C_associated_SNPs_32908 0 0 1 0 1 Ribosome 1 0.500231643921093 0.935264229774476 0.999536712157814 hm5C_site_32849 DeepMRMD:0.935264229774476;iRNA_m5C:0.999536712157814 32850 chrX 150156315 150156315 1 + G A SKCM 150156313 + 150156293 150156333 41 AGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA AGGGTCCTGCTAAAGTTGCCCGAAAAAAGGTGGAAGAGGAA < 41bp 1 0.555510741713842 1 0.558401465415955 experiment 0.888978516572317 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156313 chrX:150156315 synonymous SNV . 0 23 hm5C_associated_SNPs_32909 0 0 1 0 1 Ribosome 1 0.500231643921092 0.88319706916809 0.999536712157815 hm5C_site_32850 DeepMRMD:0.88319706916809;iRNA_m5C:0.999536712157815 32851 chr8 26505250 26505250 1 + C T SKCM 26505249 + 26505229 26505269 41 AGGCCGCATTGCTGTGGGATCCGATGCCGACCTGGTCATCT AGGCCGCATTGCTGTGGGATCTGATGCCGACCTGGTCATCT < 41bp 1 0.377909611309804 1 0.0956980586051941 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26505249 chr8:26505250 synonymous SNV . 0 22 hm5C_associated_SNPs_32910 0 0 1 0 0 Nucleus 1 0.500236408704738 1 0.999527182590525 hm5C_site_32851 DeepMRMD:1;iRNA_m5C:0.999527182590525 32852 chr7 150034718 150034718 1 + C T SKCM 150034708 + 150034688 150034728 41 GGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCT GGTACTCAGCTCTGCGGGCCCCACCTCTTCTTTCGTCTTCT < 41bp 1 0.188772074047961 1 0.0686376392841339 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRRC61 ENSG00000127399 CDS Human protein_coding chr7:150034708 chr7:150034718 synonymous SNV . 0 31 hm5C_associated_SNPs_32911 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32852 DeepMRMD:1;iRNA_m5C:0.999536712157815 32853 chr10 5147811 5147811 1 + G A SKCM 5147798 + 5147778 5147818 41 TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGGACAT TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAAAGGACAT < 41bp 1 0.165336033963827 1 0.141538679599762 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5147798 chr10:5147811 nonsynonymous SNV 0.523 2 34 hm5C_associated_SNPs_32912 0 0 1 0 2 Ribosome 1 0.500229783084819 1 0.999540433830362 hm5C_site_32853 DeepMRMD:1;iRNA_m5C:0.999540433830362 32854 chr13 24242875 24242875 1 + C T SKCM 24242887 + 24242867 24242907 41 CTTCGGATCCCTCACGCAGTCCATCTGTGGCGAGTTTTCAG CTTCGGATTCCTCACGCAGTCCATCTGTGGCGAGTTTTCAG < 41bp 1 0.119351776901287 1 0.0899239182472229 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24242887 chr13:24242875 nonsynonymous SNV 0.023 4 9 hm5C_associated_SNPs_32913 0 0 1 0 1 cytosol 1 0.500231398960223 1 0.999537202079555 hm5C_site_32854 DeepMRMD:1;iRNA_m5C:0.999537202079555 32855 chr19 42857946 42857946 1 + C T SKCM 42857961 + 42857941 42857981 41 GCTTTCGGGAGTGTGGGGGTCGCGCCCTCCTCACCAACGTG GCTTTTGGGAGTGTGGGGGTCGCGCCCTCCTCACCAACGTG < 41bp 1 0.242957479665618 1 0.207087248563766 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42857961 chr19:42857946 nonsynonymous SNV 0.972 3 6 hm5C_associated_SNPs_32914 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921133 1 0.999536712157734 hm5C_site_32855 DeepMRMD:1;iRNA_m5C:0.999536712157734 32856 chr20 62374338 62374338 1 + G A SKCM 62374321 + 62374301 62374341 41 AGCCTGCCGCTGGAAGAAAGCCTGCCAGCGGTTCCTGGACT AGCCTGCCGCTGGAAGAAAGCCTGCCAGCGGTTCCTGAACT < 41bp 1 0.142350207582328 1 0.32578706741333 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62374321 chr20:62374338 nonsynonymous SNV 0.958 3 38 hm5C_associated_SNPs_32915 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32856 DeepMRMD:1;iRNA_m5C:0.999536712157815 32857 chr17 55194271 55194271 1 + G A SKCM 55194253 + 55194233 55194273 41 CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAATG < 41bp 1 0.490021497675383 1 0.393924355506897 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194253 chr17:55194271 nonsynonymous SNV 0.922 1 39 hm5C_associated_SNPs_32916 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_32857 DeepMRMD:1;iRNA_m5C:0.999536712157815 32858 chr19 5667165 5667165 1 + C T SKCM 5667169 + 5667149 5667189 41 GGGCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACA GGGCCGGGGGCTGCCTTCTCCCCCCAGGTTTGTGTCCCACA < 41bp 1 0.266537956985277 1 0.246707260608673 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667169 chr19:5667165 nonsynonymous SNV 0.998 2 17 hm5C_associated_SNPs_32917 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32858 DeepMRMD:1;iRNA_m5C:0.999536712157815 32859 chr19 5667165 5667165 1 + C T SKCM 5667171 + 5667151 5667191 41 GCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACC GCCGGGGGCTGCCTTCTCCCCCCAGGTTTGTGTCCCACACC < 41bp 1 0.537443924250458 1 0.318094551563263 experiment 0.925112151499084 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667171 chr19:5667165 nonsynonymous SNV 0.998 2 15 hm5C_associated_SNPs_32918 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32859 DeepMRMD:1;iRNA_m5C:0.999536712157815 32860 chr19 5667165 5667165 1 + C T SKCM 5667172 + 5667152 5667192 41 CCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACCC CCGGGGGCTGCCTTCTCCCCCCAGGTTTGTGTCCCACACCC < 41bp 1 0.641107142722661 1 0.509437203407288 experiment 0.717785714554679 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667172 chr19:5667165 nonsynonymous SNV 0.998 2 14 hm5C_associated_SNPs_32919 0 0 1 0 1 chromatin 1 0.500231643921092 0.981125593185424 0.999536712157815 hm5C_site_32860 DeepMRMD:0.981125593185424;iRNA_m5C:0.999536712157815 32861 chr19 5667165 5667165 1 + C T SKCM 5667173 + 5667153 5667193 41 CGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACCCG CGGGGGCTGCCTTCTCCCCCCAGGTTTGTGTCCCACACCCG < 41bp 1 0.697696260586262 1 0.616830348968506 experiment 0.604607478827475 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667173 chr19:5667165 nonsynonymous SNV 0.998 2 13 hm5C_associated_SNPs_32920 0 0 1 0 1 chromatin 1 0.500231643921074 0.766339302062988 0.999536712157851 hm5C_site_32861 DeepMRMD:0.766339302062988;iRNA_m5C:0.999536712157851 32862 chr21 47864701 47864701 1 + G T SKCM 47864706 + 47864686 47864726 41 ATTCACCATTTAGAAGTGATCCAGCAAAGATTGGGAGGGGT ATTCACCATTTAGAATTGATCCAGCAAAGATTGGGAGGGGT < 41bp 1 0.046869236458306 1 0.400844067335129 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47864706 chr21:47864701 nonsynonymous SNV 0.457 0 16 hm5C_associated_SNPs_32921 0 0 1 0 2 Exosome 1 0.500233357171266 1 0.999533285657467 hm5C_site_32862 DeepMRMD:1;iRNA_m5C:0.999533285657467 32863 chr18 3457419 3457419 1 + G A SKCM 3457403 + 3457383 3457423 41 CGCCCGCCGCAGGCTCCTCCCTGACATGCTGAGAAAGGATG CGCCCGCCGCAGGCTCCTCCCTGACATGCTGAGAAAAGATG < 41bp 1 0.266250684225128 1 0.0790799260139465 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457403 chr18:3457419 synonymous SNV . 0 37 hm5C_associated_SNPs_32922 0 0 0 0 1 Cytosol 1 0.500231643925387 1 0.999536712149226 hm5C_site_32863 DeepMRMD:1;iRNA_m5C:0.999536712149226 32864 chr12 6618900 6618900 1 + C T SKCM 6618914 + 6618894 6618934 41 GCCTTTCGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT GCCTTTTGAGCTCAGGGGCCCCTGGCTATGCTGCAGCACTT < 41bp 1 0.120623796889369 1 0.124195516109467 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6618914 chr12:6618900 stopgain 0.995 1 7 hm5C_associated_SNPs_32923 0 0 1 0 2 Nucleus 1 0.500231503793732 1 0.999536992412536 hm5C_site_32864 DeepMRMD:1;iRNA_m5C:0.999536992412536 32865 chr10 17277874 17277874 1 + C T SKCM 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTTCCTG < 41bp 1 0.0623112591989138 1 0.489414632320404 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277874 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_32924 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32865 DeepMRMD:1;iRNA_m5C:0.999536712157815 32866 chr22 23438371 23438371 1 + C T SKCM 23438366 + 23438346 23438386 41 ACTACCTGAACGACCTGGAGCGCATCGCCGCAGCTGACTAT ACTACCTGAACGACCTGGAGCGCATTGCCGCAGCTGACTAT < 41bp 1 0.263004096542511 1 0.0590869188308716 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438366 chr22:23438371 synonymous SNV . 0 26 hm5C_associated_SNPs_32925 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32866 DeepMRMD:1;iRNA_m5C:0.999536712157815 32867 chr10 17271885 17271885 1 + G A SKCM 17271865 + 17271845 17271885 41 GGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCG GGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCA < 41bp 1 0.0577990106069 1 0.13743394613266 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271865 chr10:17271885 nonsynonymous SNV 1.000 5 41 hm5C_associated_SNPs_32926 0 0 1 0 1 Ribosome 1 0.500231631482986 1 0.999536737034028 hm5C_site_32867 DeepMRMD:1;iRNA_m5C:0.999536737034028 32868 chr1 161199489 161199489 1 + C T SKCM 161199507 + 161199487 161199527 41 GGCTCCCTTTGAACCCGGCCCAATCTTTGGTCCCAGCATTT GGTTCCCTTTGAACCCGGCCCAATCTTTGGTCCCAGCATTT < 41bp 1 0.0537274586426028 1 0.058824896812439 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NR1I3 ENSG00000143257 CDS Human protein_coding chr1:161199507 chr1:161199489 nonsynonymous SNV 0.028 2 3 hm5C_associated_SNPs_32929 0 0 1 0 0 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_32868 DeepMRMD:1;iRNA_m5C:0.999536712157815 32869 chr10 135233559 135233559 1 + C T SKCM 135233540 + 135233520 135233560 41 CGTCCCCCAGGTAACGTGAACATTATTCAGCCTAACTATCC CGTCCCCCAGGTAACGTGAACATTATTCAGCCTAACTATTC < 41bp 1 0.200495320583192 1 0.00833305716514587 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135233540 chr10:135233559 nonsynonymous SNV 0.000 0 40 hm5C_associated_SNPs_32930 0 0 1 0 1 Cytosol 1 0.500231644011253 1 0.999536711977494 hm5C_site_32869 DeepMRMD:1;iRNA_m5C:0.999536711977494 32870 chr17 46940288 46940288 1 + A G SKCM 46940294 + 46940274 46940314 41 GCCCCTTTGTTTCAATTGTCCAATTTGTGACAAGATCTTCC GCCCCTTTGTTTCAGTTGTCCAATTTGTGACAAGATCTTCC < 41bp 1 0.130819593203424 1 0.247120499610901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46940294 chr17:46940288 nonsynonymous SNV 0.848 0 15 hm5C_associated_SNPs_32931 0 0 1 0 1 Ribosome 1 0.500231879781519 1 0.999536240436962 hm5C_site_32870 DeepMRMD:1;iRNA_m5C:0.999536240436962 32871 chr11 62554746 62554746 1 + A G SKCM 62554734 + 62554714 62554754 41 CCGCCCCGCCCGCCGGTGGGCGCTCTCGGACTACTCGCTGT CCGCCCCGCCCGCCGGTGGGCGCTCTCGGACTGCTCGCTGT < 41bp 1 0.218116221755586 1 0.0765882730484009 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62554734 chr11:62554746 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_32932 0 0 1 0 0 Ribosome 1 0.500231643920878 1 0.999536712158244 hm5C_site_32871 DeepMRMD:1;iRNA_m5C:0.999536712158244 32872 chr11 62554746 62554746 1 + A G SKCM 62554736 + 62554716 62554756 41 GCCCCGCCCGCCGGTGGGCGCTCTCGGACTACTCGCTGTAC GCCCCGCCCGCCGGTGGGCGCTCTCGGACTGCTCGCTGTAC < 41bp 1 0.187638035055417 1 0.10699987411499 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62554736 chr11:62554746 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_32933 0 0 1 0 0 Ribosome 1 0.500231644606569 1 0.999536710786862 hm5C_site_32872 DeepMRMD:1;iRNA_m5C:0.999536710786862 32873 chr15 90771687 90771687 1 + G A SKCM 90771692 + 90771672 90771712 41 CCACTCAACGGCCTAGGGCCCCCTAGCACCCCGCTCGATCA CCACTCAACGGCCTAAGGCCCCCTAGCACCCCGCTCGATCA < 41bp 1 0.239480092708531 1 0.132070332765579 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90771692 chr15:90771687 nonsynonymous SNV 0.100 0 16 hm5C_associated_SNPs_32934 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32873 DeepMRMD:1;iRNA_m5C:0.999536712157815 32874 chr7 142458473 142458473 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCC < 41bp 1 0.144194330003626 1 0.219684571027756 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458473 synonymous SNV . 0 28 hm5C_associated_SNPs_32935 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32874 DeepMRMD:1;iRNA_m5C:0.999536712157815 32875 chr7 142458473 142458473 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAA < 41bp 1 0.0597582124035614 1 0.0722103118896484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458473 synonymous SNV . 0 24 hm5C_associated_SNPs_32936 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32875 DeepMRMD:1;iRNA_m5C:0.999536712157815 32876 chr7 142458473 142458473 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAAT < 41bp 1 0.0369182531844875 1 0.0275020599365234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458473 synonymous SNV . 0 23 hm5C_associated_SNPs_32937 0 0 0 0 2 Cytosol 1 0.500231637961304 1 0.999536724077392 hm5C_site_32876 DeepMRMD:1;iRNA_m5C:0.999536724077392 32877 chr7 142458473 142458473 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAATT < 41bp 1 0.0420020308745517 1 0.0287684798240662 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458473 synonymous SNV . 0 22 hm5C_associated_SNPs_32938 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32877 DeepMRMD:1;iRNA_m5C:0.999536712157815 32878 chr7 142458473 142458473 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.287118715086589 1 0.343545079231262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458473 synonymous SNV . 0 18 hm5C_associated_SNPs_32939 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32878 DeepMRMD:1;iRNA_m5C:0.999536712157815 32879 chr7 142458473 142458473 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCTTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.678757067412848 1 0.922478318214417 experiment 0.642485865174303 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458473 synonymous SNV . 0 17 hm5C_associated_SNPs_32940 0 0 0 0 2 Cytosol 1 0.500231643916141 0.155043363571166 0.999536712167719 hm5C_site_32879 DeepMRMD:0.155043363571166;iRNA_m5C:0.999536712167719 32880 chr7 142458473 142458473 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCTTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.109063859105772 1 0.0459425151348114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458473 synonymous SNV . 0 10 hm5C_associated_SNPs_32941 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32880 DeepMRMD:1;iRNA_m5C:0.999536712157815 32881 chr7 142458473 142458473 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCTTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.316179085305892 1 0.0795203149318695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458473 synonymous SNV . 0 9 hm5C_associated_SNPs_32942 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32881 DeepMRMD:1;iRNA_m5C:0.999536712157815 32882 chr6 150290481 150290481 1 + A T SKCM 150290478 + 150290458 150290498 41 AATTTTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT AATTTTTGATGTACTGGGAACAATTGCTGGATCCAACAAGT < 41bp 1 0.1543164359069 1 0.287184536457062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290478 chr6:150290481 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_32946 0 0 0 0 1 Nucleus 1 0.500502139195174 1 0.998995721609653 hm5C_site_32882 DeepMRMD:1;iRNA_m5C:0.998995721609653 32883 chr17 79202796 79202796 1 + A G SKCM 79202783 - 79202763 79202803 41 AACATCGTCCCAGAGGACAGCAGCCAAAGAGCCTCCTGGCT AACATCGCCCCAGAGGACAGCAGCCAAAGAGCCTCCTGGCT < 41bp 1 0.178774529941812 1 0.320834934711456 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79202783 chr17:79202796 nonsynonymous SNV 0.006 0 8 hm5C_associated_SNPs_32947 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32883 DeepMRMD:1;iRNA_m5C:0.999536712157815 32884 chrX 147022103 147022103 1 + A G SKCM 147022104 + 147022084 147022124 41 TTCTTTTTCAGGGTATGGTACCATTTGTTTTTGTGGGAACA TTCTTTTTCAGGGTATGGTGCCATTTGTTTTTGTGGGAACA < 41bp 1 0.0408652713110458 1 0.0816825032234192 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FMR1 ENSG00000102081 CDS Human protein_coding chrX:147022104 chrX:147022103 synonymous SNV . 0 20 hm5C_associated_SNPs_32948 0 0 1 0 1 Cytosol 1 0.50023164368684 1 0.99953671262632 hm5C_site_32884 DeepMRMD:1;iRNA_m5C:0.99953671262632 32885 chr11 65269103 65269103 1 + T C SKCM 65269107 + 65269087 65269127 41 TGGGTTAGAGAAGGAGTGTACCGCTGTGCTGTTGGCACGAA TGGGTTAGAGAAGGAGCGTACCGCTGTGCTGTTGGCACGAA < 41bp 1 0.479006619019069 1 0.190056413412094 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269107 chr11:65269103 . . 0 17 hm5C_associated_SNPs_32950 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_32885 DeepMRMD:1;iRNA_m5C:0.999536712157815 32886 chr11 65269103 65269103 1 + T C SKCM 65269110 + 65269090 65269130 41 GTTAGAGAAGGAGTGTACCGCTGTGCTGTTGGCACGAACAC GTTAGAGAAGGAGCGTACCGCTGTGCTGTTGGCACGAACAC < 41bp 1 0.522479659342181 1 0.20936593413353 experiment 0.955040681315638 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269110 chr11:65269103 . . 0 14 hm5C_associated_SNPs_32951 0 0 1 1 0 unknown 1 0.500540619398647 1 0.998918761202705 hm5C_site_32886 DeepMRMD:1;iRNA_m5C:0.998918761202705 32887 chr11 65269103 65269103 1 + T C SKCM 65269115 + 65269095 65269135 41 AGAAGGAGTGTACCGCTGTGCTGTTGGCACGAACACCTTCA AGAAGGAGCGTACCGCTGTGCTGTTGGCACGAACACCTTCA < 41bp 1 0.345294216937071 1 0.116498619318008 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269115 chr11:65269103 . . 0 9 hm5C_associated_SNPs_32952 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_32887 DeepMRMD:1;iRNA_m5C:0.999536712157815 32888 chr7 142458472 142458472 1 + C T SKCM 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCT < 41bp 1 0.380649722675686 1 0.276246905326843 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458472 nonsynonymous SNV 0.950 5 41 hm5C_associated_SNPs_32953 0 0 0 0 2 Cytosol 1 0.500231643923472 1 0.999536712153056 hm5C_site_32888 DeepMRMD:1;iRNA_m5C:0.999536712153056 32889 chr7 142458472 142458472 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCC < 41bp 1 0.197189946730647 1 0.156828761100769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458472 nonsynonymous SNV 0.950 5 27 hm5C_associated_SNPs_32954 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_32889 DeepMRMD:1;iRNA_m5C:0.999536712157817 32890 chr7 142458472 142458472 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAA < 41bp 1 0.0469247433680245 1 0.193209439516068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458472 nonsynonymous SNV 0.950 5 23 hm5C_associated_SNPs_32955 0 0 0 0 2 Cytosol 1 0.500231643927068 1 0.999536712145864 hm5C_site_32890 DeepMRMD:1;iRNA_m5C:0.999536712145864 32891 chr7 142458472 142458472 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAAT < 41bp 1 0.275131465410388 1 0.84273636341095 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458472 nonsynonymous SNV 0.950 5 22 hm5C_associated_SNPs_32956 0 0 0 0 2 Cytosol 1 0.500231630762508 0.3145272731781 0.999536738474984 hm5C_site_32891 DeepMRMD:0.3145272731781;iRNA_m5C:0.999536738474984 32892 chr7 142458472 142458472 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAATTC < 41bp 1 0.189385629106869 1 0.130478143692017 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458472 nonsynonymous SNV 0.950 5 20 hm5C_associated_SNPs_32957 0 0 0 0 2 Cytosol 1 0.500231497391222 1 0.999537005217555 hm5C_site_32892 DeepMRMD:1;iRNA_m5C:0.999537005217555 32893 chr7 142458472 142458472 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.256169391229861 1 0.227031737565994 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458472 nonsynonymous SNV 0.950 5 17 hm5C_associated_SNPs_32958 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32893 DeepMRMD:1;iRNA_m5C:0.999536712157815 32894 chr7 142458472 142458472 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCTCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.645729166545285 1 0.915310263633728 experiment 0.70854166690943 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458472 nonsynonymous SNV 0.950 5 16 hm5C_associated_SNPs_32959 0 0 0 0 2 Cytosol 1 0.500234212455327 0.169379472732544 0.999531575089346 hm5C_site_32894 DeepMRMD:0.169379472732544;iRNA_m5C:0.999531575089346 32895 chr7 142458472 142458472 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCTCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.106601191043875 1 0.0650842785835266 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458472 nonsynonymous SNV 0.950 5 9 hm5C_associated_SNPs_32960 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32895 DeepMRMD:1;iRNA_m5C:0.999536712157815 32896 chr7 142458472 142458472 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCTCTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.334667259850817 1 0.0990870893001556 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458472 nonsynonymous SNV 0.950 5 8 hm5C_associated_SNPs_32961 0 0 0 0 2 Cytosol 1 0.500231456604278 1 0.999537086791444 hm5C_site_32896 DeepMRMD:1;iRNA_m5C:0.999537086791444 32897 chr3 196533549 196533549 1 + A G SKCM 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATGCGAA < 41bp 1 0.514939403759917 1 0.754564821720123 experiment 0.970121192480165 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533549 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_32963 0 0 1 0 2 Ribosome 1 0.500231643921092 0.490870356559754 0.999536712157815 hm5C_site_32897 DeepMRMD:0.490870356559754;iRNA_m5C:0.999536712157815 32898 chr6 37141788 37141788 1 + C T SKCM 37141808 + 37141788 37141828 41 CATGGATGCAAGATGTTCTCCTGCCCCAGGAAACTGCTGAG TATGGATGCAAGATGTTCTCCTGCCCCAGGAAACTGCTGAG < 41bp 1 0.316289126096278 1 0.284970641136169 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PIM1 ENSG00000137193 CDS Human protein_coding chr6:37141808 chr6:37141788 nonsynonymous SNV 0.980 3 1 hm5C_associated_SNPs_32964 0 0 1 0 1 Cytosol 1 0.500231643920962 1 0.999536712158076 hm5C_site_32898 DeepMRMD:1;iRNA_m5C:0.999536712158076 32899 chr19 14512300 14512300 1 + C T SKCM 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA TTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.268190440777002 1 0.0456079244613647 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512300 nonsynonymous SNV 0.004 3 1 hm5C_associated_SNPs_32965 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32899 DeepMRMD:1;iRNA_m5C:0.999536712157815 32900 chr7 128494182 128494182 1 + C T SKCM 128494192 + 128494172 128494212 41 CCACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGG CCACCCAGGTTGGCGGGGACCCCTTCCCTGCTGTGTTTGGG < 41bp 1 0.0451179681943544 1 0.0619874000549316 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128494192 chr7:128494182 synonymous SNV . 0 11 hm5C_associated_SNPs_32966 0 0 0 0 0 chromatin 1 0.50023164381206 1 0.999536712375879 hm5C_site_32900 DeepMRMD:1;iRNA_m5C:0.999536712375879 32901 chr7 128494182 128494182 1 + C T SKCM 128494193 + 128494173 128494213 41 CACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGGG CACCCAGGTTGGCGGGGACCCCTTCCCTGCTGTGTTTGGGG < 41bp 1 0.0146484680511558 1 0.148904085159302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128494193 chr7:128494182 synonymous SNV . 0 10 hm5C_associated_SNPs_32967 0 0 0 0 0 chromatin 1 0.500231646026574 1 0.999536707946851 hm5C_site_32901 DeepMRMD:1;iRNA_m5C:0.999536707946851 32902 chr19 34959991 34959991 1 + T C SKCM 34959978 + 34959958 34959998 41 TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA TGACGTTCTCATAGTTGATTCAGATGAAGAAGACTCTTCAA < 41bp 1 0.492127335758123 1 0.314709663391113 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34959978 chr19:34959991 synonymous SNV . 0 34 hm5C_associated_SNPs_32968 0 0 1 0 1 Cytosol 1 0.500231643882963 1 0.999536712234075 hm5C_site_32902 DeepMRMD:1;iRNA_m5C:0.999536712234075 32903 chr17 57644043 57644043 1 + G A SKCM 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACTACTCCAACTTTTCCTATTCAAAAACAAAGAAAAA < 41bp 1 0.0912366310786778 1 0.209234088659286 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644043 synonymous SNV . 0 28 hm5C_associated_SNPs_32969 0 0 1 0 2 Ribosome 1 0.500231643920926 1 0.999536712158149 hm5C_site_32903 DeepMRMD:1;iRNA_m5C:0.999536712158149 32904 chr2 232035369 232035369 1 + C T SKCM 232035362 + 232035342 232035382 41 ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAAC ACCTGTGGCAGCACATGGCCCAAAAATTGAGGAGGAGGAAC < 41bp 1 0.607097675975384 1 0.143536269664764 experiment 0.785804648049232 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232035362 chr2:232035369 synonymous SNV . 0 28 hm5C_associated_SNPs_32970 0 0 1 0 2 Nucleus 1 0.500340988499576 1 0.999318023000848 hm5C_site_32904 DeepMRMD:1;iRNA_m5C:0.999318023000848 32905 chr9 74817548 74817548 1 + G A SKCM 74817563 + 74817543 74817583 41 TTGCTGGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTG TTGCTAGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTG < 41bp 1 0.258638193838469 1 0.0568445920944214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GDA ENSG00000119125 CDS Human protein_coding chr9:74817563 chr9:74817548 nonsynonymous SNV 0.941 5 6 hm5C_associated_SNPs_32971 0 0 0 0 1 Cytosol 1 0.500231643984562 1 0.999536712030875 hm5C_site_32905 DeepMRMD:1;iRNA_m5C:0.999536712030875 32906 chr16 50813885 50813885 1 + C T SKCM 50813901 + 50813881 50813921 41 CCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC CCTCTTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC < 41bp 1 0.318069828422271 1 0.314236968755722 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CYLD ENSG00000083799 CDS Human protein_coding chr16:50813901 chr16:50813885 nonsynonymous SNV 0.976 4 5 hm5C_associated_SNPs_32972 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32906 DeepMRMD:1;iRNA_m5C:0.999536712157815 32907 chr16 309980 309980 1 + C T SKCM 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG CTCTCTCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG < 41bp 1 0.585433238664908 1 0.0461578071117401 experiment 0.829133522670184 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:309980 nonsynonymous SNV 0.014 2 6 hm5C_associated_SNPs_32973 0 0 1 4 1 Ribosome 1 0.500231644012312 1 0.999536711975377 hm5C_site_32907 DeepMRMD:1;iRNA_m5C:0.999536711975377 32908 chr11 120776137 120776137 1 + G A SKCM 120776153 + 120776133 120776173 41 GGATGGCGTGTACGGCGTTCCCGAGGCCAACGGCACCTGGA GGATAGCGTGTACGGCGTTCCCGAGGCCAACGGCACCTGGA < 41bp 1 0.306805913016646 1 0.753268241882324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120776153 chr11:120776137 nonsynonymous SNV 0.568 5 5 hm5C_associated_SNPs_32974 0 0 0 0 0 membrane 1 0.500225059494602 0.493463516235352 0.999549881010795 hm5C_site_32908 DeepMRMD:0.493463516235352;iRNA_m5C:0.999549881010795 32909 chr10 17278313 17278313 1 + C T SKCM 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCTCTCTGGTTGATACCCACTCAAAA < 41bp 1 0.374906283925765 1 0.712915420532227 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278313 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_32975 0 0 1 0 2 Ribosome 1 0.500231643989568 0.574169158935546 0.999536712020864 hm5C_site_32909 DeepMRMD:0.574169158935546;iRNA_m5C:0.999536712020864 32910 chr2 32800289 32800289 1 + C T SKCM 32800281 + 32800261 32800301 41 CTGCTGGAATTGCTTCGGGCCATTGCTTCTTGTGCTGCCAT CTGCTGGAATTGCTTCGGGCCATTGCTTTTTGTGCTGCCAT < 41bp 1 0.0360203149012819 1 0.11701101064682 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32800281 chr2:32800289 nonsynonymous SNV 0.990 2 29 hm5C_associated_SNPs_32976 0 0 1 0 1 Nucleus 1 0.500231660014856 1 0.999536679970288 hm5C_site_32910 DeepMRMD:1;iRNA_m5C:0.999536679970288 32911 chr5 176721888 176721888 1 + G A SKCM 176721903 + 176721883 176721923 41 AGAAAGGCTGTGTGTCAGATCCTCTTCAGACATCTGGGAAA AGAAAAGCTGTGTGTCAGATCCTCTTCAGACATCTGGGAAA < 41bp 1 0.05065778805751 1 0.0527101457118988 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176721903 chr5:176721888 nonsynonymous SNV 0.003 1 6 hm5C_associated_SNPs_32977 0 0 1 0 0 Nucleus 1 0.500231643918114 1 0.999536712163772 hm5C_site_32911 DeepMRMD:1;iRNA_m5C:0.999536712163772 32912 chr12 93968784 93968784 1 + C T SKCM 93968798 + 93968778 93968818 41 AGAAGCCCCCCGGAACGGCACTGTTCACCTTTATCTGACCA AGAAGCTCCCCGGAACGGCACTGTTCACCTTTATCTGACCA < 41bp 1 0.251187199426582 1 0.0505889058113098 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93968798 chr12:93968784 synonymous SNV . 0 7 hm5C_associated_SNPs_32978 0 0 1 0 0 Ribosome 1 0.500231643921053 1 0.999536712157894 hm5C_site_32912 DeepMRMD:1;iRNA_m5C:0.999536712157894 32913 chr6 34823398 34823398 1 + C T SKCM 34823411 + 34823391 34823431 41 TAGGTGTCTCTGCCAACAGACTCATGGGTGGTGCCATGCAG TAGGTGTTTCTGCCAACAGACTCATGGGTGGTGCCATGCAG < 41bp 1 0.20872750146139 1 0.239050000905991 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34823411 chr6:34823398 synonymous SNV . 0 8 hm5C_associated_SNPs_32979 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32913 DeepMRMD:1;iRNA_m5C:0.999536712157815 32914 chr1 27088718 27088718 1 + C T SKCM 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCCGCGTCAGCTTTCCGGAGGACAGATA < 41bp 1 0.303353761279462 1 0.190733850002289 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088718 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_32982 0 0 1 0 2 Nucleus 1 0.500231643920834 1 0.999536712158332 hm5C_site_32914 DeepMRMD:1;iRNA_m5C:0.999536712158332 32915 chr6 7581101 7581101 1 + C T SKCM 7581082 + 7581062 7581102 41 CAGGAGAGGACTGTGAAGGACCAGGATATCACGCGGTTCCA CAGGAGAGGACTGTGAAGGACCAGGATATCACGCGGTTCTA < 41bp 1 0.361133608068293 1 0.256294369697571 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581082 chr6:7581101 stopgain 0.854 1 40 hm5C_associated_SNPs_32983 0 0 1 0 0 Nucleus 1 0.500231644024493 1 0.999536711951013 hm5C_site_32915 DeepMRMD:1;iRNA_m5C:0.999536711951013 32916 chr6 7581101 7581101 1 + C T SKCM 7581095 + 7581075 7581115 41 TGAAGGACCAGGATATCACGCGGTTCCAGAACTCTCTGAAA TGAAGGACCAGGATATCACGCGGTTCTAGAACTCTCTGAAA < 41bp 1 0.206508123293873 1 0.260834872722626 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581095 chr6:7581101 stopgain 0.854 1 27 hm5C_associated_SNPs_32984 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32916 DeepMRMD:1;iRNA_m5C:0.999536712157815 32917 chr6 7581101 7581101 1 + C T SKCM 7581100 + 7581080 7581120 41 GACCAGGATATCACGCGGTTCCAGAACTCTCTGAAAGAGCT GACCAGGATATCACGCGGTTCTAGAACTCTCTGAAAGAGCT < 41bp 1 0.455388065074217 1 0.568095624446869 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581100 chr6:7581101 stopgain 0.854 1 22 hm5C_associated_SNPs_32985 0 0 1 0 0 Nucleus 1 0.500231643958142 0.863808751106262 0.999536712083715 hm5C_site_32917 DeepMRMD:0.863808751106262;iRNA_m5C:0.999536712083715 32918 chr19 54377065 54377065 1 + C T SKCM 54377053 + 54377033 54377073 41 ATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTC ATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTTCCCCTGTC < 41bp 1 0.680622234545108 1 0.881418228149414 experiment 0.638755530909785 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYADM ENSG00000179820 CDS Human protein_coding chr19:54377053 chr19:54377065 synonymous SNV . 0 33 hm5C_associated_SNPs_32989 0 0 1 0 0 Nucleus 1 0.500231643921347 0.237163543701172 0.999536712157305 hm5C_site_32918 DeepMRMD:0.237163543701172;iRNA_m5C:0.999536712157305 32919 chr9 17786423 17786423 1 + C T SKCM 17786409 + 17786389 17786429 41 TAAGCTCAGCATGATCAACACCATGTCAAAAATCCGTGGCC TAAGCTCAGCATGATCAACACCATGTCAAAAATCTGTGGCC < 41bp 1 0.175389370534905 1 0.117599934339523 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17786409 chr9:17786423 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_32990 0 0 0 0 2 nucleus 1 0.500231636523793 1 0.999536726952415 hm5C_site_32919 DeepMRMD:1;iRNA_m5C:0.999536726952415 32920 chr12 93968785 93968785 1 + C T SKCM 93968798 + 93968778 93968818 41 AGAAGCCCCCCGGAACGGCACTGTTCACCTTTATCTGACCA AGAAGCCTCCCGGAACGGCACTGTTCACCTTTATCTGACCA < 41bp 1 0.292039448214624 1 0.0718801915645599 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93968798 chr12:93968785 nonsynonymous SNV 0.979 1 8 hm5C_associated_SNPs_32991 0 0 1 0 0 Ribosome 1 0.500231649384773 1 0.999536701230453 hm5C_site_32920 DeepMRMD:1;iRNA_m5C:0.999536701230453 32921 chr4 20555447 20555447 1 + C T SKCM 20555440 + 20555420 20555460 41 TTTTCCAGAGCAATTGGAGCCAACCCTCTTTACTGTGATTG TTTTCCAGAGCAATTGGAGCCAACCCTTTTTACTGTGATTG < 41bp 1 0.101895027188219 1 0.156450241804123 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20555440 chr4:20555447 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_32993 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32921 DeepMRMD:1;iRNA_m5C:0.999536712157815 32922 chr6 47576991 47576991 1 + C T SKCM 47576982 + 47576962 47577002 41 AAAAAAATTCCCTGGATGAACTTAGAGCCCAGATTATTGAA AAAAAAATTCCCTGGATGAACTTAGAGCCTAGATTATTGAA < 41bp 1 0.195338097860517 1 0.0927630662918091 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47576982 chr6:47576991 stopgain 1.000 0 30 hm5C_associated_SNPs_32994 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32922 DeepMRMD:1;iRNA_m5C:0.999536712157815 32923 chr2 204143314 204143314 1 + C T SKCM 204143304 + 204143284 204143324 41 TTTTTCTCTAAGCCCTCATGCAACTGGAGTCTGTTTTAAGG TTTTTCTCTAAGCCCTCATGCAACTGGAGTTTGTTTTAAGG < 41bp 1 0.0961598394818742 1 0.693093657493591 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP20A1 ENSG00000119004 CDS Human protein_coding chr2:204143304 chr2:204143314 nonsynonymous SNV 0.995 1 31 hm5C_associated_SNPs_32995 0 0 1 0 2 Nucleus 1 0.50023164389795 0.613812685012818 0.9995367122041 hm5C_site_32923 DeepMRMD:0.613812685012818;iRNA_m5C:0.9995367122041 32924 chr14 103390068 103390068 1 + A G SKCM 103390064 + 103390044 103390084 41 CCAGCACTGACCCAGGCGGTCTCCAAACTCTGGGTCCCCAA CCAGCACTGACCCAGGCGGTCTCCGAACTCTGGGTCCCCAA < 41bp 1 0.618678145069036 1 0.235884219408035 experiment 0.762643709861929 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control AMN ENSG00000166126 CDS Human protein_coding chr14:103390064 chr14:103390068 nonsynonymous SNV 0.937 4 25 hm5C_associated_SNPs_32996 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_32924 DeepMRMD:1;iRNA_m5C:0.999536712157815 32925 chr5 82868277 82868277 1 + T A SKCM 82868273 + 82868253 82868293 41 CCCAACCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTG CCCAACCAGCCAGACAGCTTCTTTACTGCTGGAGAAGACTG < 41bp 1 0.105218924227343 1 0.116587817668915 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868273 chr5:82868277 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_32997 0 0 1 0 1 Ribosome 1 0.500236791918767 1 0.999526416162466 hm5C_site_32925 DeepMRMD:1;iRNA_m5C:0.999526416162466 32926 chr5 82868277 82868277 1 + T A SKCM 82868278 + 82868258 82868298 41 CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG CCAGCCAGACAGCTTCTTTACTGCTGGAGAAGACTGTGTTG < 41bp 1 0.465445533714019 1 0.314036309719086 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868278 chr5:82868277 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_32998 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32926 DeepMRMD:1;iRNA_m5C:0.999536712157815 32927 chr19 1055315 1055315 1 + C T SKCM 1055304 + 1055284 1055324 41 AGAACCTGACAGGCCGGAACCTGTCTGACTTCCTGGTCAAG AGAACCTGACAGGCCGGAACCTGTCTGACTTTCTGGTCAAG < 41bp 1 0.129381856089368 1 0.118060499429703 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1055304 chr19:1055315 synonymous SNV . 0 32 hm5C_associated_SNPs_32999 0 0 1 0 1 Endoplasmic reticulum 1 0.499865277171682 1 1 hm5C_site_32927 DeepMRMD:1;iRNA_m5C:1 32928 chr9 137702147 137702147 1 + G A SKCM 137702152 + 137702132 137702172 41 GCAAGGGGGACAAAGGAGAACAGGTAAGTATTGGCACGGGG GCAAGGGGGACAAAGAAGAACAGGTAAGTATTGGCACGGGG < 41bp 1 0.435875731107619 1 0.497283786535263 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137702152 chr9:137702147 nonsynonymous SNV 0.975 4 16 hm5C_associated_SNPs_33000 0 0 0 0 2 Nucleus 1 0.500231648955433 1 0.999536702089133 hm5C_site_32928 DeepMRMD:1;iRNA_m5C:0.999536702089133 32929 chr10 102114298 102114298 1 + C T SKCM 102114310 + 102114290 102114330 41 GTTGGCTGCTTGTGCGCAAACACCCAGCTGTCAAAGAGAAG GTTGGCTGTTTGTGCGCAAACACCCAGCTGTCAAAGAGAAG < 41bp 1 0.465619561837344 1 0.0448154807090759 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102114310 chr10:102114298 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_33001 0 0 1 0 1 Ribosome 1 0.500231273436776 1 0.999537453126448 hm5C_site_32929 DeepMRMD:1;iRNA_m5C:0.999537453126448 32930 chr10 118314900 118314900 1 + G A SKCM 118314913 + 118314893 118314933 41 ATTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGA ATTTCAGAGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGA < 41bp 1 0.301642955232254 1 0.0895519554615021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314913 chr10:118314900 nonsynonymous SNV 0.889 5 8 hm5C_associated_SNPs_33002 0 0 0 0 1 unknown 1 0.500231493199915 1 0.999537013600171 hm5C_site_32930 DeepMRMD:1;iRNA_m5C:0.999537013600171 32931 chr10 118314900 118314900 1 + G A SKCM 118314914 + 118314894 118314934 41 TTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGAT TTTCAGAGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGAT < 41bp 1 0.574968586964839 1 0.434966683387756 experiment 0.850062826070322 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314914 chr10:118314900 nonsynonymous SNV 0.889 5 7 hm5C_associated_SNPs_33003 0 0 0 0 1 unknown 1 0.500231643065328 1 0.999536713869345 hm5C_site_32931 DeepMRMD:1;iRNA_m5C:0.999536713869345 32932 chr10 118314900 118314900 1 + G A SKCM 118314919 + 118314899 118314939 41 GGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTT GAGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTT < 41bp 1 0.594926412385063 1 0.395836234092712 experiment 0.810147175229874 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314919 chr10:118314900 nonsynonymous SNV 0.889 5 2 hm5C_associated_SNPs_33004 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_32932 DeepMRMD:1;iRNA_m5C:0.999536712157815 32933 chr3 123348364 123348364 1 + C T SKCM 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATTGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT < 41bp 1 0.563578977501968 1 0.361248314380646 experiment 0.872842044996063 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348364 nonsynonymous SNV 0.991 1 6 hm5C_associated_SNPs_33005 0 0 1 0 1 Cytosol 1 0.500231678448098 1 0.999536643103804 hm5C_site_32933 DeepMRMD:1;iRNA_m5C:0.999536643103804 32934 chr1 249212359 249212359 1 + G A SKCM 249212364 + 249212344 249212384 41 GCCTGTGTGTATCTGGAGAGCAATGCTGACACAACATCTCA GCCTGTGTGTATCTGAAGAGCAATGCTGACACAACATCTCA < 41bp 1 0.418081903133997 1 0.0801030993461609 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212364 chr1:249212359 nonsynonymous SNV 0.812 2 16 hm5C_associated_SNPs_33006 0 0 1 0 0 Cytosol 1 0.500232258318381 1 0.999535483363238 hm5C_site_32934 DeepMRMD:1;iRNA_m5C:0.999535483363238 32935 chr10 17277175 17277175 1 + C T SKCM 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTTCCTGGAACGCCAGATGCGTGA < 41bp 1 0.175478583835548 1 0.220364958047867 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277175 nonsynonymous SNV 0.984 5 20 hm5C_associated_SNPs_33007 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_32935 DeepMRMD:1;iRNA_m5C:0.999536712157812 32936 chr10 17277175 17277175 1 + C T SKCM 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTTCCTGGAACGCCAGATGCGTGAAATGGAAGA < 41bp 1 0.42281443124748 1 0.506452322006226 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277175 nonsynonymous SNV 0.984 5 11 hm5C_associated_SNPs_33008 0 0 1 0 1 Ribosome 1 0.500231754178489 0.987095355987548 0.999536491643021 hm5C_site_32936 DeepMRMD:0.987095355987548;iRNA_m5C:0.999536491643021 32937 chr10 17277175 17277175 1 + C T SKCM 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTTCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT < 41bp 1 0.623278376205259 1 0.34809610247612 experiment 0.753443247589481 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277175 nonsynonymous SNV 0.984 5 4 hm5C_associated_SNPs_33009 0 0 1 0 1 Ribosome 1 0.500118234993228 1 0.999763530013544 hm5C_site_32937 DeepMRMD:1;iRNA_m5C:0.999763530013544 32938 chr10 103901199 103901199 1 + C T SKCM 103901206 + 103901186 103901226 41 GTTCCACATGTACCTATGGGCCCTTGGGATGGGGCCCAGGG GTTCCACATGTACTTATGGGCCCTTGGGATGGGGCCCAGGG < 41bp 1 0.0746088736955248 1 0.032678484916687 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901206 chr10:103901199 synonymous SNV . 0 14 hm5C_associated_SNPs_33010 0 0 1 0 0 Cytosol 1 0.500231643920986 1 0.999536712158029 hm5C_site_32938 DeepMRMD:1;iRNA_m5C:0.999536712158029 32939 chr10 103901199 103901199 1 + C T SKCM 103901207 + 103901187 103901227 41 TTCCACATGTACCTATGGGCCCTTGGGATGGGGCCCAGGGC TTCCACATGTACTTATGGGCCCTTGGGATGGGGCCCAGGGC < 41bp 1 0.0523586017208218 1 0.0732603073120117 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901207 chr10:103901199 synonymous SNV . 0 13 hm5C_associated_SNPs_33011 0 0 1 0 0 Cytosol 1 0.500231643913997 1 0.999536712172006 hm5C_site_32939 DeepMRMD:1;iRNA_m5C:0.999536712172006 32940 chr10 103901199 103901199 1 + C T SKCM 103901208 + 103901188 103901228 41 TCCACATGTACCTATGGGCCCTTGGGATGGGGCCCAGGGCC TCCACATGTACTTATGGGCCCTTGGGATGGGGCCCAGGGCC < 41bp 1 0.376858244792231 1 0.377097636461258 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901208 chr10:103901199 synonymous SNV . 0 12 hm5C_associated_SNPs_33012 0 0 1 0 0 Cytosol 1 0.50023164392137 1 0.999536712157261 hm5C_site_32940 DeepMRMD:1;iRNA_m5C:0.999536712157261 32941 chr19 12924222 12924222 1 + C T SKCM 12924210 + 12924190 12924230 41 CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCTCCGTTCTT < 41bp 1 0.338337996210214 1 0.0867345333099365 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924210 chr19:12924222 nonsynonymous SNV 0.000 1 33 hm5C_associated_SNPs_33013 0 0 1 0 1 Ribosome 1 0.500231643909006 1 0.999536712181988 hm5C_site_32941 DeepMRMD:1;iRNA_m5C:0.999536712181988 32942 chr19 12924222 12924222 1 + C T SKCM 12924211 + 12924191 12924231 41 TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTC TACTTCCTCAATGAAGGGTCCCAAGCCCGTCTCCGTTCTTC < 41bp 1 0.118331636456806 1 0.0571168065071106 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924211 chr19:12924222 nonsynonymous SNV 0.000 1 32 hm5C_associated_SNPs_33014 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32942 DeepMRMD:1;iRNA_m5C:0.999536712157815 32943 chr19 12924222 12924222 1 + C T SKCM 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCCCGTCTCCGTTCTTCCCACCGATATTTCCTGGAACG < 41bp 1 0.156925525786646 1 0.0685359835624695 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924222 nonsynonymous SNV 0.000 1 11 hm5C_associated_SNPs_33015 0 0 1 0 1 Ribosome 1 0.500231640292113 1 0.999536719415773 hm5C_site_32943 DeepMRMD:1;iRNA_m5C:0.999536719415773 32944 chr5 176522676 176522676 1 + C T SKCM 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCTT < 41bp 1 0.0526767796823401 1 0.219229847192764 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522676 synonymous SNV . 0 40 hm5C_associated_SNPs_33016 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_32944 DeepMRMD:1;iRNA_m5C:0.999536712157815 32945 chr17 33310197 33310197 1 + C T SKCM 33310210 + 33310190 33310230 41 GTTCTATCATTCCAGGGAAGCCATCTAAGATCACGTGCCAC GTTCTATTATTCCAGGGAAGCCATCTAAGATCACGTGCCAC < 41bp 1 0.0485913912044388 1 0.18621900677681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33310210 chr17:33310197 nonsynonymous SNV 0.063 0 8 hm5C_associated_SNPs_33017 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_32945 DeepMRMD:1;iRNA_m5C:0.999536712157812 32946 chr19 12924223 12924223 1 + C T SKCM 12924210 + 12924190 12924230 41 CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCTCGTTCTT < 41bp 1 0.315524612606752 1 0.0429238080978394 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924210 chr19:12924223 synonymous SNV . 0 34 hm5C_associated_SNPs_33019 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32946 DeepMRMD:1;iRNA_m5C:0.999536712157815 32947 chr19 12924223 12924223 1 + C T SKCM 12924211 + 12924191 12924231 41 TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTC TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCTCGTTCTTC < 41bp 1 0.105139591269371 1 0.0451509356498718 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924211 chr19:12924223 synonymous SNV . 0 33 hm5C_associated_SNPs_33020 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_32947 DeepMRMD:1;iRNA_m5C:0.999536712157815 32948 chr19 12924223 12924223 1 + C T SKCM 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCCCGTCCTCGTTCTTCCCACCGATATTTCCTGGAACG < 41bp 1 0.136967049713126 1 0.0628723502159119 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924223 synonymous SNV . 0 12 hm5C_associated_SNPs_33021 0 0 1 0 1 Ribosome 1 0.500231643921062 1 0.999536712157877 hm5C_site_32948 DeepMRMD:1;iRNA_m5C:0.999536712157877 32949 chr17 7476166 7476166 1 + G A SKCM 7476180 + 7476160 7476200 41 ATGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA ATGTCTACGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA < 41bp 1 0.37393210978976 1 0.0886116027832031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476180 chr17:7476166 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_33022 0 0 1 0 1 Cytosol 1 0.500230779258015 1 0.999538441483971 hm5C_site_32949 DeepMRMD:1;iRNA_m5C:0.999538441483971 32950 chr17 7476166 7476166 1 + G A SKCM 7476181 + 7476161 7476201 41 TGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA TGTCTACGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA < 41bp 1 0.698417972731271 1 0.632169604301453 experiment 0.603164054537458 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476181 chr17:7476166 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_33023 0 0 1 0 1 Cytosol 1 0.500231643924296 0.735660791397094 0.999536712151408 hm5C_site_32950 DeepMRMD:0.735660791397094;iRNA_m5C:0.999536712151408 32951 chr7 22896303 22896303 1 + C T SKCM 22896296 + 22896276 22896316 41 GTGATGGATTAAAGGATTTACCTGAGGCCAAATTGGTATGC GTGATGGATTAAAGGATTTACCTGAGGTCAAATTGGTATGC < 41bp 1 0.544606905830431 1 0.0799378156661987 experiment 0.910786188339138 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896296 chr7:22896303 . . 0 28 hm5C_associated_SNPs_33024 0 0 1 0 0 unknown 1 0.500231643921089 1 0.999536712157823 hm5C_site_32951 DeepMRMD:1;iRNA_m5C:0.999536712157823 32952 chr5 179150759 179150759 1 + C T SKCM 179150760 + 179150740 179150780 41 TTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAG TTCCTGTGTTCCTGGTTATTCTCTTCTGCTGTTCTGGAAAG < 41bp 1 0.331168264305379 1 0.248176991939545 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150760 chr5:179150759 synonymous SNV . 0 20 hm5C_associated_SNPs_33025 0 0 1 0 2 Nucleus 1 0.500231643916286 1 0.999536712167427 hm5C_site_32952 DeepMRMD:1;iRNA_m5C:0.999536712167427 32953 chr5 32090175 32090175 1 + G A SKCM 32090169 + 32090149 32090189 41 AGAAACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCT AGAAACAGCATTCCAGGGGGCCCCTCAGGGGAGGACCATCT < 41bp 1 0.0304445096271552 1 0.0455739498138428 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090169 chr5:32090175 synonymous SNV . 0 27 hm5C_associated_SNPs_33026 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32953 DeepMRMD:1;iRNA_m5C:0.999536712157815 32954 chr5 32090175 32090175 1 + G A SKCM 32090171 + 32090151 32090191 41 AAACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCTCT AAACAGCATTCCAGGGGGCCCCTCAGGGGAGGACCATCTCT < 41bp 1 0.0729525625620776 1 0.139523237943649 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090171 chr5:32090175 synonymous SNV . 0 25 hm5C_associated_SNPs_33027 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32954 DeepMRMD:1;iRNA_m5C:0.999536712157815 32955 chr5 32090175 32090175 1 + G A SKCM 32090172 + 32090152 32090192 41 AACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCTCTA AACAGCATTCCAGGGGGCCCCTCAGGGGAGGACCATCTCTA < 41bp 1 0.228657837591456 1 0.737671971321106 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090172 chr5:32090175 synonymous SNV . 0 24 hm5C_associated_SNPs_33028 0 0 0 0 0 chromatin 1 0.500231643924025 0.524656057357788 0.999536712151951 hm5C_site_32955 DeepMRMD:0.524656057357788;iRNA_m5C:0.999536712151951 32956 chr5 32090175 32090175 1 + G A SKCM 32090174 + 32090154 32090194 41 CAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCTCTACT CAGCATTCCAGGGGGCCCCTCAGGGGAGGACCATCTCTACT < 41bp 1 0.518912668785605 1 0.959793567657471 experiment 0.96217466242879 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090174 chr5:32090175 synonymous SNV . 0 22 hm5C_associated_SNPs_33029 0 0 0 0 0 chromatin 1 0.500231643921094 0.0804128646850579 0.999536712157812 hm5C_site_32956 DeepMRMD:0.0804128646850579;iRNA_m5C:0.999536712157812 32957 chr17 64783058 64783058 1 + C T SKCM 64783073 + 64783053 64783093 41 AAAATCCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG AAAATTCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGAG < 41bp 1 0.0443267099011385 1 0.225540578365326 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64783073 chr17:64783058 nonsynonymous SNV 0.953 1 6 hm5C_associated_SNPs_33030 0 0 1 0 2 Ribosome 1 0.500231643914995 1 0.99953671217001 hm5C_site_32957 DeepMRMD:1;iRNA_m5C:0.99953671217001 32958 chr5 32090176 32090176 1 + G A SKCM 32090169 + 32090149 32090189 41 AGAAACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCT AGAAACAGCATTCCAGGGGGCCCCTCGAGGGAGGACCATCT < 41bp 1 0.0283856195891691 1 0.0849694907665253 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090169 chr5:32090176 nonsynonymous SNV 0.020 1 28 hm5C_associated_SNPs_33031 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32958 DeepMRMD:1;iRNA_m5C:0.999536712157815 32959 chr5 32090176 32090176 1 + G A SKCM 32090171 + 32090151 32090191 41 AAACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCTCT AAACAGCATTCCAGGGGGCCCCTCGAGGGAGGACCATCTCT < 41bp 1 0.0371086863999956 1 0.142301499843597 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090171 chr5:32090176 nonsynonymous SNV 0.020 1 26 hm5C_associated_SNPs_33032 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_32959 DeepMRMD:1;iRNA_m5C:0.999536712157815 32960 chr5 32090176 32090176 1 + G A SKCM 32090172 + 32090152 32090192 41 AACAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCTCTA AACAGCATTCCAGGGGGCCCCTCGAGGGAGGACCATCTCTA < 41bp 1 0.558350368361662 1 0.947225272655487 experiment 0.883299263276675 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090172 chr5:32090176 nonsynonymous SNV 0.020 1 25 hm5C_associated_SNPs_33033 0 0 0 0 0 chromatin 1 0.500231643922194 0.105549454689026 0.999536712155613 hm5C_site_32960 DeepMRMD:0.105549454689026;iRNA_m5C:0.999536712155613 32961 chr5 32090176 32090176 1 + G A SKCM 32090174 + 32090154 32090194 41 CAGCATTCCAGGGGGCCCCTCGGGGGAGGACCATCTCTACT CAGCATTCCAGGGGGCCCCTCGAGGGAGGACCATCTCTACT < 41bp 1 0.418610628325244 1 0.946359574794769 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32090174 chr5:32090176 nonsynonymous SNV 0.020 1 23 hm5C_associated_SNPs_33034 0 0 0 0 0 chromatin 1 0.500231930898558 0.107280850410462 0.999536138202883 hm5C_site_32961 DeepMRMD:0.107280850410462;iRNA_m5C:0.999536138202883 32962 chr1 155279906 155279906 1 + C T SKCM 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTTGTTCAGCACTTCTCCCAGATCGTTAGGGT < 41bp 1 0.121607527431422 1 0.086618036031723 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279906 synonymous SNV . 0 12 hm5C_associated_SNPs_33035 0 0 1 0 3 Cytosol 1 0.500231634673498 1 0.999536730653005 hm5C_site_32962 DeepMRMD:1;iRNA_m5C:0.999536730653005 32963 chr6 31912779 31912779 1 + C T SKCM 31912772 + 31912752 31912792 41 GGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT GGCAGGAGAATCTGGGGGAGCAGTTTTTCTTGAGCGGAGAT < 41bp 1 0.158300041911037 1 0.357093632221222 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2 ENSG00000166278 CDS Human protein_coding chr6:31912772 chr6:31912779 synonymous SNV . 0 28 hm5C_associated_SNPs_33036 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_32963 DeepMRMD:1;iRNA_m5C:0.999536712157815 32964 chr19 54377066 54377066 1 + C T SKCM 54377053 + 54377033 54377073 41 ATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTC ATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCTCCCTGTC < 41bp 1 0.659838664032573 1 0.861976385116577 experiment 0.680322671934854 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYADM ENSG00000179820 CDS Human protein_coding chr19:54377053 chr19:54377066 nonsynonymous SNV 0.996 3 34 hm5C_associated_SNPs_33037 0 0 1 0 0 Nucleus 1 0.500231291855947 0.276047229766846 0.999537416288106 hm5C_site_32964 DeepMRMD:0.276047229766846;iRNA_m5C:0.999537416288106 32965 chrX 153628232 153628232 1 + C T SKCM 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATATCCGGGTGCGGCTCCACCCTTTCCACGTCATCCGCAT < 41bp 1 0.175331861611953 1 0.0176310539245605 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628232 synonymous SNV . 0 24 hm5C_associated_SNPs_33038 0 0 1 0 1 Cytosol 1 0.500231643917762 1 0.999536712164476 hm5C_site_32965 DeepMRMD:1;iRNA_m5C:0.999536712164476 32966 chrX 73046700 73046700 1 + C T SKCM 73046689 - 73046669 73046709 41 CTAAGAACTGAGACTTGTGACACAAGGCCAACGACCTAAGA CTAAGAACTAAGACTTGTGACACAAGGCCAACGACCTAAGA < 41bp 1 0.464820898637154 1 0.0910386443138123 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046689 chrX:73046700 . . 0 10 hm5C_associated_SNPs_33039 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_32966 DeepMRMD:1;iRNA_m5C:0.999536712157815 32967 chrX 73046700 73046700 1 + C T SKCM 73046709 - 73046689 73046729 41 GGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGAC GGACAGGACACATGGAAGGCCTAAGAACTAAGACTTGTGAC < 41bp 1 0.280734789803574 1 0.410710364580154 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046709 chrX:73046700 . . 0 30 hm5C_associated_SNPs_33040 0 0 1 2 0 unknown 1 0.500231537800237 1 0.999536924399526 hm5C_site_32967 DeepMRMD:1;iRNA_m5C:0.999536924399526 32968 chr11 57373926 57373926 1 + C T SKCM 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAAGAAAACCAGAATGGAACTCTTTCACTTCAAAAACTCA < 41bp 1 0.0590576479221573 1 0.0841116011142731 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373926 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_33041 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_32968 DeepMRMD:1;iRNA_m5C:0.999536712157815 32969 chr11 57373926 57373926 1 + C T SKCM 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AAGAAAACCAGAATGGAACTCTTTCACTTCAAAAACTCAGT < 41bp 1 0.0202458816843359 1 0.0550184547901154 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373926 nonsynonymous SNV 0.005 1 20 hm5C_associated_SNPs_33042 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643926239 1 0.999536712147521 hm5C_site_32969 DeepMRMD:1;iRNA_m5C:0.999536712147521 32970 chr11 57373926 57373926 1 + C T SKCM 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAGAATGGAACTCTTTCACTTCAAAAACTCAGTTATAAA < 41bp 1 0.47332484688398 1 0.171887993812561 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373926 nonsynonymous SNV 0.005 1 14 hm5C_associated_SNPs_33043 0 0 0 0 2 Endoplasmic reticulum 1 0.500231706876521 1 0.999536586246959 hm5C_site_32970 DeepMRMD:1;iRNA_m5C:0.999536586246959 32971 chr17 29554567 29554567 1 + G A SKCM 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATGAGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA < 41bp 1 0.115624238386339 1 0.0956215560436249 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554567 stopgain 1.000 1 5 hm5C_associated_SNPs_33044 1 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32971 DeepMRMD:1;iRNA_m5C:0.999536712157815 Neurofibromatosis, type 1 Neurofibromatosis, type 1 32972 chr17 66033503 66033503 1 + T C SKCM 66033483 + 66033463 66033503 41 CTTTTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAAT CTTTTCTCAAGGAAATGAGGCGTCGCAGAATAGAGGTCAAC < 41bp 1 0.168980034827355 1 0.118505507707596 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033483 chr17:66033503 nonsynonymous SNV . 0 41 hm5C_associated_SNPs_33045 0 0 1 0 1 Cytosol 1 0.50023164396951 1 0.999536712060979 hm5C_site_32972 DeepMRMD:1;iRNA_m5C:0.999536712060979 32973 chr17 66033503 66033503 1 + T C SKCM 66033510 + 66033490 66033530 41 GAATAGAGGTCAATGTGGAGCTGAGGAAAGCTAAGAAGGAT GAATAGAGGTCAACGTGGAGCTGAGGAAAGCTAAGAAGGAT < 41bp 1 0.626551969108269 1 0.419543147087097 experiment 0.746896061783461 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033510 chr17:66033503 nonsynonymous SNV . 0 14 hm5C_associated_SNPs_33048 0 0 1 0 1 Cytosol 1 0.500231643921111 1 0.999536712157778 hm5C_site_32973 DeepMRMD:1;iRNA_m5C:0.999536712157778 32974 chr17 66033503 66033503 1 + T C SKCM 66033520 + 66033500 66033540 41 CAATGTGGAGCTGAGGAAAGCTAAGAAGGATGACCAGATGC CAACGTGGAGCTGAGGAAAGCTAAGAAGGATGACCAGATGC < 41bp 1 0.592798155960296 1 0.205645114183426 experiment 0.814403688079408 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033520 chr17:66033503 nonsynonymous SNV . 0 4 hm5C_associated_SNPs_33049 0 0 1 0 1 Cytosol 1 0.500231644179126 1 0.999536711641748 hm5C_site_32974 DeepMRMD:1;iRNA_m5C:0.999536711641748 32975 chr13 113487183 113487183 1 + G A SKCM 113487177 + 113487157 113487197 41 GAACTGCTTTTTTATAGGAGCGCGAGGAGCTGTTTTTCCGG GAACTGCTTTTTTATAGGAGCGCGAGAAGCTGTTTTTCCGG < 41bp 1 0.667879167668804 1 0.619832813739777 experiment 0.664241664662392 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487177 chr13:113487183 nonsynonymous SNV 0.955 1 27 hm5C_associated_SNPs_33050 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.760334372520446 0.999536712157815 hm5C_site_32975 DeepMRMD:0.760334372520446;iRNA_m5C:0.999536712157815 32976 chr7 142457350 142457350 1 + G A SKCM 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATGAATCCACTCCTAATCCTTACCTTTGTG < 41bp 1 0.19618092078612 1 0.0556423664093018 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457350 synonymous SNV . 0 26 hm5C_associated_SNPs_33052 0 0 0 0 1 Cytosol 1 0.500231644956778 1 0.999536710086444 hm5C_site_32976 DeepMRMD:1;iRNA_m5C:0.999536710086444 32977 chr7 142457350 142457350 1 + G A SKCM 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATGAATCCACTCCTAATCCTTACCTTTGTGGC < 41bp 1 0.110841316040329 1 0.167268604040146 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457350 synonymous SNV . 0 24 hm5C_associated_SNPs_33053 0 0 0 0 1 Cytosol 1 0.500231644780759 1 0.999536710438482 hm5C_site_32977 DeepMRMD:1;iRNA_m5C:0.999536710438482 32978 chr7 142457350 142457350 1 + G A SKCM 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATGAATCCACTCCTAATCCTTACCTTTGTGGCA < 41bp 1 0.0643956862325446 1 0.189029514789581 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457350 synonymous SNV . 0 23 hm5C_associated_SNPs_33054 0 0 0 0 1 Cytosol 1 0.500231636847979 1 0.999536726304042 hm5C_site_32978 DeepMRMD:1;iRNA_m5C:0.999536726304042 32979 chr7 142457350 142457350 1 + G A SKCM 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATGAATCCACTCCTAATCCTTACCTTTGTGGCAGCTGC < 41bp 1 0.0941516949837495 1 0.0571050643920898 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457350 synonymous SNV . 0 18 hm5C_associated_SNPs_33055 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32979 DeepMRMD:1;iRNA_m5C:0.999536712157815 32980 chr7 142457350 142457350 1 + G A SKCM 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATGAATCCACTCCTAATCCTTACCTTTGTGGCAGCTGCT < 41bp 1 0.0574142173516575 1 0.097992330789566 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457350 synonymous SNV . 0 17 hm5C_associated_SNPs_33056 0 0 0 0 1 Cytosol 1 0.500231643921024 1 0.999536712157951 hm5C_site_32980 DeepMRMD:1;iRNA_m5C:0.999536712157951 32981 chr7 142457350 142457350 1 + G A SKCM 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATCCACTCCTAATCCTTACCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.0298751667126139 1 0.0207196474075317 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457350 synonymous SNV . 0 13 hm5C_associated_SNPs_33057 0 0 0 0 1 Cytosol 1 0.500231643922324 1 0.999536712155352 hm5C_site_32981 DeepMRMD:1;iRNA_m5C:0.999536712155352 32982 chr7 142457350 142457350 1 + G A SKCM 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATCCACTCCTAATCCTTACCTTTGTGGCAGCTGCTCGTGA < 41bp 1 0.14239210802812 1 0.138241440057755 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457350 synonymous SNV . 0 12 hm5C_associated_SNPs_33058 0 0 0 0 1 Cytosol 1 0.500231643921394 1 0.999536712157212 hm5C_site_32982 DeepMRMD:1;iRNA_m5C:0.999536712157212 32983 chr7 142457350 142457350 1 + G A SKCM 142457367 + 142457347 142457387 41 CCTGATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG CCTAATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATG < 41bp 1 0.300388450394124 1 0.240536868572235 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457367 chr7:142457350 synonymous SNV . 0 4 hm5C_associated_SNPs_33059 0 0 0 0 1 Cytosol 1 0.500231466448616 1 0.999537067102768 hm5C_site_32983 DeepMRMD:1;iRNA_m5C:0.999537067102768 32984 chr7 142457350 142457350 1 + G A SKCM 142457370 + 142457350 142457390 41 GATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC AATCCTTACCTTTGTGGCAGCTGCTCGTGAGTATCATGCCC < 41bp 1 0.282015218583083 1 0.185142815113068 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457370 chr7:142457350 synonymous SNV . 0 1 hm5C_associated_SNPs_33060 0 0 0 0 1 Cytosol 1 0.500231329180802 1 0.999537341638396 hm5C_site_32984 DeepMRMD:1;iRNA_m5C:0.999537341638396 32985 chr10 135000048 135000048 1 + C T SKCM 135000066 + 135000046 135000086 41 TTCACACCCCAGCCAGGGGCCAGCAGAGGCCCCTGCAGACC TTTACACCCCAGCCAGGGGCCAGCAGAGGCCCCTGCAGACC < 41bp 1 0.602232220796475 1 0.722378551959991 experiment 0.795535558407049 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135000066 chr10:135000048 nonsynonymous SNV 0.002 1 3 hm5C_associated_SNPs_33061 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.555242896080018 0.999536712157815 hm5C_site_32985 DeepMRMD:0.555242896080018;iRNA_m5C:0.999536712157815 32986 chr17 29554566 29554566 1 + G A SKCM 29554583 + 29554563 29554603 41 AATGGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA AATAGGAACAAGCAACAAAGCTAATCCTTAACTATCCAAAA < 41bp 1 0.113773485298973 1 0.0882815718650818 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29554583 chr17:29554566 stopgain 1.000 1 4 hm5C_associated_SNPs_33062 0 0 1 0 2 Nucleus 1 0.500231643919442 1 0.999536712161117 hm5C_site_32986 DeepMRMD:1;iRNA_m5C:0.999536712161117 32987 chr1 9416002 9416002 1 + A T SKCM 9415999 + 9415979 9416019 41 AGACTGTGGACATGAGGGACCCCACGTACAGGCCCCTGAAG AGACTGTGGACATGAGGGACCCCTCGTACAGGCCCCTGAAG < 41bp 1 0.0709888534008238 1 0.157059967517853 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPSB1 ENSG00000171621 CDS Human protein_coding chr1:9415999 chr1:9416002 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_33063 0 0 0 0 0 nucleus 1 0.500231609936104 1 0.999536780127791 hm5C_site_32987 DeepMRMD:1;iRNA_m5C:0.999536780127791 32988 chrX 105891583 105891583 1 + G A SKCM 105891593 + 105891573 105891613 41 ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCA ACAAACAAAGAGAATTAAACCGGGCATGCCAAGCATCTTCA < 41bp 1 0.682366630943268 1 0.59158581495285 experiment 0.635266738113463 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891593 chrX:105891583 nonsynonymous SNV 0.171 0 11 hm5C_associated_SNPs_33064 0 0 0 0 1 nucleus 1 0.500231644116781 0.8168283700943 0.999536711766438 hm5C_site_32988 DeepMRMD:0.8168283700943;iRNA_m5C:0.999536711766438 32989 chrX 105891584 105891584 1 + G A SKCM 105891593 + 105891573 105891613 41 ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCA ACAAACAAAGGAAATTAAACCGGGCATGCCAAGCATCTTCA < 41bp 1 0.645487383157998 1 0.633966147899628 experiment 0.709025233684004 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891593 chrX:105891584 nonsynonymous SNV 0.163 0 12 hm5C_associated_SNPs_33065 0 0 0 0 1 nucleus 1 0.500231644355968 0.732067704200744 0.999536711288065 hm5C_site_32989 DeepMRMD:0.732067704200744;iRNA_m5C:0.999536711288065 32990 chr1 11718602 11718602 1 + G A SKCM 11718593 + 11718573 11718613 41 CCTCTGCCTGCCCCCAGCACCTGCCTCAAGTCCCAGGTGGT CCTCTGCCTGCCCCCAGCACCTGCCTCAAATCCCAGGTGGT < 41bp 1 0.245527510348091 1 0.111568033695221 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718593 chr1:11718602 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_33066 0 0 1 2 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_32990 DeepMRMD:1;iRNA_m5C:0.999536712157815 32991 chr11 400004 400004 1 + G A SKCM 399996 + 399976 400016 41 GGAACCTTTCATCCAGCGACCACCTGAAGGACCGCCTGGCC GGAACCTTTCATCCAGCGACCACCTGAAAGACCGCCTGGCC < 41bp 1 0.310378449195483 1 0.377758115530014 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:399996 chr11:400004 synonymous SNV . 0 29 hm5C_associated_SNPs_33070 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_32991 DeepMRMD:1;iRNA_m5C:0.999536712157815 32992 chr11 400005 400005 1 + G A SKCM 399996 + 399976 400016 41 GGAACCTTTCATCCAGCGACCACCTGAAGGACCGCCTGGCC GGAACCTTTCATCCAGCGACCACCTGAAGAACCGCCTGGCC < 41bp 1 0.316413152899457 1 0.293822586536407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:399996 chr11:400005 nonsynonymous SNV 0.995 0 30 hm5C_associated_SNPs_33071 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_32992 DeepMRMD:1;iRNA_m5C:0.999536712157814 32993 chr11 32953892 32953892 1 + C T SKCM 32953900 + 32953880 32953920 41 AGTCATCTTTATCCTGTAGCCCAATTGGAGATTCCACTCAG AGTCATCTTTATTCTGTAGCCCAATTGGAGATTCCACTCAG < 41bp 1 0.240664200706758 1 0.161152631044388 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QSER1 ENSG00000060749 CDS Human protein_coding chr11:32953900 chr11:32953892 nonsynonymous SNV 0.996 3 13 hm5C_associated_SNPs_33073 0 0 1 0 1 Cytosol 1 0.500231636242474 1 0.999536727515052 hm5C_site_32993 DeepMRMD:1;iRNA_m5C:0.999536727515052 32994 chr11 32953892 32953892 1 + C T SKCM 32953901 + 32953881 32953921 41 GTCATCTTTATCCTGTAGCCCAATTGGAGATTCCACTCAGG GTCATCTTTATTCTGTAGCCCAATTGGAGATTCCACTCAGG < 41bp 1 0.0836376260682505 1 0.134955257177353 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QSER1 ENSG00000060749 CDS Human protein_coding chr11:32953901 chr11:32953892 nonsynonymous SNV 0.996 3 12 hm5C_associated_SNPs_33074 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_32994 DeepMRMD:1;iRNA_m5C:0.999536712157815 32995 chr19 806426 806426 1 + T G SKCM 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG GAACGGCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG < 41bp 1 0.300477303669071 1 0.0288357734680176 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806426 nonsynonymous SNV 0.006 0 6 hm5C_associated_SNPs_33075 0 0 1 0 1 Cytosol 1 0.50023157963323 1 0.99953684073354 hm5C_site_32995 DeepMRMD:1;iRNA_m5C:0.99953684073354 32996 chr19 806426 806426 1 + T G SKCM 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AACGGCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC < 41bp 1 0.402237503311127 1 0.0781495273113251 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806426 nonsynonymous SNV 0.006 0 5 hm5C_associated_SNPs_33076 0 0 1 0 1 Cytosol 1 0.500231643323067 1 0.999536713353866 hm5C_site_32996 DeepMRMD:1;iRNA_m5C:0.999536713353866 32997 chr19 806426 806426 1 + T G SKCM 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGGCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG < 41bp 1 0.426020327945649 1 0.0342611074447632 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806426 nonsynonymous SNV 0.006 0 4 hm5C_associated_SNPs_33077 0 0 1 0 1 Cytosol 1 0.500231020520236 1 0.999537958959529 hm5C_site_32997 DeepMRMD:1;iRNA_m5C:0.999537958959529 32998 chr19 806426 806426 1 + T G SKCM 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGGCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG < 41bp 1 0.466387883835186 1 0.174447983503342 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806426 nonsynonymous SNV 0.006 0 3 hm5C_associated_SNPs_33078 0 0 1 0 1 Cytosol 1 0.500231643892503 1 0.999536712214994 hm5C_site_32998 DeepMRMD:1;iRNA_m5C:0.999536712214994 32999 chr19 806426 806426 1 + T G SKCM 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GGCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC < 41bp 1 0.502625418168959 1 0.540522158145905 experiment 0.994749163662082 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806426 nonsynonymous SNV 0.006 0 2 hm5C_associated_SNPs_33079 0 0 1 0 1 Cytosol 1 0.500231638593259 0.91895568370819 0.999536722813483 hm5C_site_32999 DeepMRMD:0.91895568370819;iRNA_m5C:0.999536722813483 33000 chr8 21844783 21844783 1 + C T SKCM 21844767 + 21844747 21844787 41 GTAAGATCTACATTGGGGACCAAGTGCAGAAATCCTCTAAG GTAAGATCTACATTGGGGACCAAGTGCAGAAATCCTTTAAG < 41bp 1 0.306077026781466 1 0.524424076080322 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21844767 chr8:21844783 nonsynonymous SNV 0.983 4 37 hm5C_associated_SNPs_33081 0 0 1 0 1 Cytosol 1 0.500231643921092 0.951151847839356 0.999536712157815 hm5C_site_33000 DeepMRMD:0.951151847839356;iRNA_m5C:0.999536712157815 33001 chr19 50721003 50721003 1 + G A SKCM 50721013 + 50720993 50721033 41 CAGTGACCGAGGGGGCCTATCGGAGCATGCTGCAGGGTGAG CAGTGACCGAAGGGGCCTATCGGAGCATGCTGCAGGGTGAG < 41bp 1 0.669816769800128 1 0.86321747303009 experiment 0.660366460399745 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50721013 chr19:50721003 synonymous SNV . 0 11 hm5C_associated_SNPs_33082 0 0 1 0 0 cytosol 1 0.500231643921092 0.27356505393982 0.999536712157815 hm5C_site_33001 DeepMRMD:0.27356505393982;iRNA_m5C:0.999536712157815 33002 chr14 103802236 103802236 1 + C T SKCM 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACCGCAGCGTGTCAGACCAGTTTTATCGCTACAAGATG < 41bp 1 0.239708010213624 1 0.0532376170158386 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802236 synonymous SNV . 0 26 hm5C_associated_SNPs_33083 0 0 1 0 1 Cytosol 1 0.500231643920251 1 0.999536712159498 hm5C_site_33002 DeepMRMD:1;iRNA_m5C:0.999536712159498 33003 chr1 9324120 9324120 1 + C T SKCM 9324137 + 9324117 9324157 41 TTTCCCAGCAGCAGCCGGAGCAGCTGGTGCCAGGGCCAGGG TTTTCCAGCAGCAGCCGGAGCAGCTGGTGCCAGGGCCAGGG < 41bp 1 0.457431282286211 1 0.339152157306671 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control H6PD ENSG00000049239 CDS Human protein_coding chr1:9324137 chr1:9324120 nonsynonymous SNV 0.958 2 4 hm5C_associated_SNPs_33084 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33003 DeepMRMD:1;iRNA_m5C:0.999536712157815 33004 chr14 60591538 60591538 1 + C T SKCM 60591543 + 60591523 60591563 41 AGTTCTATTAGGATACCCTGCTGTTGACAAAGGAAAACAAG AGTTCTATTAGGATATCCTGCTGTTGACAAAGGAAAACAAG < 41bp 1 0.200252030159915 1 0.23190501332283 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60591543 chr14:60591538 synonymous SNV . 0 16 hm5C_associated_SNPs_33085 0 0 1 3 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_33004 DeepMRMD:1;iRNA_m5C:0.999536712157814 33005 chr10 114711274 114711274 1 + G A SKCM 114711291 + 114711271 114711311 41 AAGGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC AAGAGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC < 41bp 1 0.361894002450433 1 0.043953537940979 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711291 chr10:114711274 nonsynonymous SNV 0.979 4 4 hm5C_associated_SNPs_33086 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_33005 DeepMRMD:1;iRNA_m5C:0.999536712157814 33006 chr19 41135393 41135393 1 + C T SKCM 41135396 + 41135376 41135416 41 CCTTCCGCTGCATCTGCCGCCCGGGATTCGCACCCACGCAC CCTTCCGCTGCATCTGCTGCCCGGGATTCGCACCCACGCAC < 41bp 1 0.651803156739852 1 0.874475002288818 experiment 0.696393686520296 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41135396 chr19:41135393 nonsynonymous SNV 0.040 1 18 hm5C_associated_SNPs_33087 0 0 1 0 1 Cytosol 1 0.500231628970526 0.251049995422364 0.999536742058948 hm5C_site_33006 DeepMRMD:0.251049995422364;iRNA_m5C:0.999536742058948 33007 chr10 114711273 114711273 1 + G A SKCM 114711291 + 114711271 114711311 41 AAGGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC AAAGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC < 41bp 1 0.371779191283174 1 0.0392322540283203 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711291 chr10:114711273 synonymous SNV . 0 3 hm5C_associated_SNPs_33089 0 0 1 0 2 Nucleus 1 0.500231643921158 1 0.999536712157685 hm5C_site_33007 DeepMRMD:1;iRNA_m5C:0.999536712157685 33008 chr19 41135392 41135392 1 + C T SKCM 41135396 + 41135376 41135416 41 CCTTCCGCTGCATCTGCCGCCCGGGATTCGCACCCACGCAC CCTTCCGCTGCATCTGTCGCCCGGGATTCGCACCCACGCAC < 41bp 1 0.635446226063241 1 0.887798607349396 experiment 0.729107547873519 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41135396 chr19:41135392 synonymous SNV . 0 17 hm5C_associated_SNPs_33090 0 0 1 0 1 Cytosol 1 0.500231640003576 0.224402785301208 0.999536719992848 hm5C_site_33008 DeepMRMD:0.224402785301208;iRNA_m5C:0.999536719992848 33009 chr16 78143687 78143687 1 + G A SKCM 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATACGAATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.352125546210641 1 0.434370934963226 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143687 nonsynonymous SNV 0.992 4 13 hm5C_associated_SNPs_33093 0 0 1 0 2 Ribosome 1 0.500231643921107 1 0.999536712157786 hm5C_site_33009 DeepMRMD:1;iRNA_m5C:0.999536712157786 33010 chr7 128483328 128483328 1 + G A SKCM 128483319 + 128483299 128483339 41 CCTTCCACATCAAGGTGGACCCATCCCACGATGCCAGCAAA CCTTCCACATCAAGGTGGACCCATCCCACAATGCCAGCAAA < 41bp 1 0.0120283517799525 1 0.206437408924103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128483319 chr7:128483328 nonsynonymous SNV 0.975 4 30 hm5C_associated_SNPs_33094 0 0 0 0 2 chromatin 1 0.500231643930292 1 0.999536712139416 hm5C_site_33010 DeepMRMD:1;iRNA_m5C:0.999536712139416 33011 chr15 99672295 99672295 1 + G A SKCM 99672281 + 99672261 99672301 41 GGAGATTATTTTTCAGGGCCCCATTTCTGCTGCAGGGAAGG GGAGATTATTTTTCAGGGCCCCATTTCTGCTGCAAGGAAGG < 41bp 1 0.00732748626881552 1 0.0692420601844788 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99672281 chr15:99672295 nonsynonymous SNV 0.012 0 35 hm5C_associated_SNPs_33096 0 0 1 0 0 exosome 1 0.500231643921035 1 0.999536712157929 hm5C_site_33011 DeepMRMD:1;iRNA_m5C:0.999536712157929 33012 chr15 99672295 99672295 1 + G A SKCM 99672282 + 99672262 99672302 41 GAGATTATTTTTCAGGGCCCCATTTCTGCTGCAGGGAAGGT GAGATTATTTTTCAGGGCCCCATTTCTGCTGCAAGGAAGGT < 41bp 1 0.00733382458498837 1 0.136484324932098 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99672282 chr15:99672295 nonsynonymous SNV 0.012 0 34 hm5C_associated_SNPs_33097 0 0 1 0 0 exosome 1 0.500231643921581 1 0.999536712156839 hm5C_site_33012 DeepMRMD:1;iRNA_m5C:0.999536712156839 33013 chrX 73046874 73046874 1 + C T SKCM 73046871 - 73046851 73046891 41 GAGGACTAAGATGGAAAGCCCATGTTCCAAGATAGATAGAA GAGGACTAAGATGGAAAACCCATGTTCCAAGATAGATAGAA < 41bp 1 0.137735739356032 1 0.126697540283203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046871 chrX:73046874 . . 0 18 hm5C_associated_SNPs_33098 0 0 1 0 0 unknown 1 0.500231643921146 1 0.999536712157707 hm5C_site_33013 DeepMRMD:1;iRNA_m5C:0.999536712157707 33014 chrX 73046874 73046874 1 + C T SKCM 73046873 - 73046853 73046893 41 CCGAGGACTAAGATGGAAAGCCCATGTTCCAAGATAGATAG CCGAGGACTAAGATGGAAAACCCATGTTCCAAGATAGATAG < 41bp 1 0.167389817818808 1 0.0521634221076965 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046873 chrX:73046874 . . 0 20 hm5C_associated_SNPs_33099 0 0 1 0 0 unknown 1 0.500231643921014 1 0.999536712157973 hm5C_site_33014 DeepMRMD:1;iRNA_m5C:0.999536712157973 33015 chrX 73046874 73046874 1 + C T SKCM 73046893 - 73046873 73046913 41 GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAAC < 41bp 1 0.213158828941811 1 0.310780882835388 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046893 chrX:73046874 . . 0 40 hm5C_associated_SNPs_33100 0 0 1 0 0 unknown 1 0.500231474104507 1 0.999537051790986 hm5C_site_33015 DeepMRMD:1;iRNA_m5C:0.999537051790986 33016 chrX 73046874 73046874 1 + C T SKCM 73046894 - 73046874 73046914 41 AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAA < 41bp 1 0.413594563864605 1 0.114596247673035 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046894 chrX:73046874 . . 0 41 hm5C_associated_SNPs_33101 0 0 1 0 0 unknown 1 0.500231643920555 1 0.999536712158891 hm5C_site_33016 DeepMRMD:1;iRNA_m5C:0.999536712158891 33017 chr12 70704717 70704717 1 + G A SKCM 70704725 + 70704705 70704745 41 AAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGA AAGAAGTTTGTAAAGGGGGTCGACAGTGACTACCATGACGA < 41bp 1 0.666475069741208 1 0.380755633115768 experiment 0.667049860517584 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT2 ENSG00000111596 CDS Human protein_coding chr12:70704725 chr12:70704717 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_33102 0 0 1 0 2 Nucleus 1 0.500231643913388 1 0.999536712173224 hm5C_site_33017 DeepMRMD:1;iRNA_m5C:0.999536712173224 33018 chr8 6302730 6302730 1 + C T SKCM 6302737 + 6302717 6302757 41 GGCCGTGCAACTTCGAGTTGCGTGACTTCTGCCCCTGAAGA GGCCGTGCAACTTTGAGTTGCGTGACTTCTGCCCCTGAAGA < 41bp 1 0.585932560988563 1 0.160093665122986 experiment 0.828134878022873 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCPH1 ENSG00000147316 CDS Human protein_coding chr8:6302737 chr8:6302730 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_33103 0 0 1 0 0 Nucleus 1 0.500231515247111 1 0.999536969505778 hm5C_site_33018 DeepMRMD:1;iRNA_m5C:0.999536969505778 33019 chr1 12027068 12027068 1 + C T SKCM 12027087 + 12027067 12027107 41 CCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG CTCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG < 41bp 1 0.194668549742267 1 0.0957699418067932 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027087 chr1:12027068 nonsynonymous SNV 0.999 5 2 hm5C_associated_SNPs_33105 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33019 DeepMRMD:1;iRNA_m5C:0.999536712157815 33020 chr3 33877671 33877671 1 + C T SKCM 33877665 + 33877645 33877685 41 ATGACTTCATTTATCATGATCGAGTTCCAGACCTTAAAGAT ATGACTTCATTTATCATGATCGAGTTTCAGACCTTAAAGAT < 41bp 1 0.51644307680478 1 0.517002761363983 experiment 0.96711384639044 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33877665 chr3:33877671 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_33106 0 0 1 0 1 Nucleus 1 0.500231640104186 0.965994477272034 0.999536719791628 hm5C_site_33020 DeepMRMD:0.965994477272034;iRNA_m5C:0.999536719791628 33021 chr22 26299772 26299772 1 + G A SKCM 26299787 + 26299767 26299807 41 AGCAGGAAAACACCATCAAGCAGCTGGAGCAGGTAGGAAAG AGCAGAAAAACACCATCAAGCAGCTGGAGCAGGTAGGAAAG < 41bp 1 0.355892475429668 1 0.73541122674942 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26299787 chr22:26299772 nonsynonymous SNV 0.997 2 6 hm5C_associated_SNPs_33107 0 0 0 0 1 chromatin 1 0.500231643921092 0.52917754650116 0.999536712157815 hm5C_site_33021 DeepMRMD:0.52917754650116;iRNA_m5C:0.999536712157815 33022 chr5 140347685 140347685 1 + G A SKCM 140347691 + 140347671 140347711 41 AGCCACAGATGGGGGAATACCGCAGCTCACATCCCTGCGTA AGCCACAGATGGGGAAATACCGCAGCTCACATCCCTGCGTA < 41bp 1 0.664698134154174 1 0.898221492767334 experiment 0.670603731691652 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCDHAC2 ENSG00000243232 CDS Human protein_coding chr5:140347691 chr5:140347685 nonsynonymous SNV 0.993 4 15 hm5C_associated_SNPs_33108 0 0 0 0 0 exosome 1 0.500231645169415 0.203557014465332 0.99953670966117 hm5C_site_33022 DeepMRMD:0.203557014465332;iRNA_m5C:0.99953670966117 33023 chr1 32691786 32691786 1 + C T SKCM 32691784 + 32691764 32691804 41 GACTCCAGGAAAGCAGCTGGCCCTTCTCAAGACCAATTCGG GACTCCAGGAAAGCAGCTGGCCTTTCTCAAGACCAATTCGG < 41bp 1 0.051145512428147 1 0.0220496654510498 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3I ENSG00000084623 CDS Human protein_coding chr1:32691784 chr1:32691786 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_33109 0 0 1 0 1 Ribosome 1 0.500231636549532 1 0.999536726900937 hm5C_site_33023 DeepMRMD:1;iRNA_m5C:0.999536726900937 33024 chr12 22811976 22811976 1 + C T SKCM 22811993 + 22811973 22812013 41 ATCCATGCTATTCATGCACACAATGGCTGGATCCCCAAATC ATCTATGCTATTCATGCACACAATGGCTGGATCCCCAAATC < 41bp 1 0.422044021384137 1 0.22485426068306 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22811993 chr12:22811976 nonsynonymous SNV 1.000 5 4 hm5C_associated_SNPs_33111 0 0 1 0 1 Ribosome 1 0.500241013521944 1 0.999517972956112 hm5C_site_33024 DeepMRMD:1;iRNA_m5C:0.999517972956112 33025 chr9 138662882 138662882 1 + G A SKCM 138662890 + 138662870 138662910 41 GGGCCTTCTCGGGGCAGGGGCTGCACGAGGGTCCGGCCCGC GGGCCTTCTCGGAGCAGGGGCTGCACGAGGGTCCGGCCCGC < 41bp 1 0.649120443764976 1 0.479114711284637 experiment 0.701759112470049 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138662890 chr9:138662882 nonsynonymous SNV 0.070 0 13 hm5C_associated_SNPs_33112 0 0 0 0 1 exosome 1 0.500231643396366 1 0.999536713207269 hm5C_site_33025 DeepMRMD:1;iRNA_m5C:0.999536713207269 33026 chr11 57427179 57427179 1 + C T SKCM 57427163 + 57427143 57427183 41 TTTCACTTGGCATGGCTGTTCTGTGCAACTGAGCGGCCGCA TTTCACTTGGCATGGCTGTTCTGTGCAACTGAGCGGTCGCA < 41bp 1 0.55455716829021 1 0.260128825902939 experiment 0.89088566341958 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLP1 ENSG00000172409 CDS Human protein_coding chr11:57427163 chr11:57427179 synonymous SNV . 0 37 hm5C_associated_SNPs_33113 0 0 1 0 0 Cytosol 1 0.500084285568674 1 0.999831428862652 hm5C_site_33026 DeepMRMD:1;iRNA_m5C:0.999831428862652 33027 chr15 74240205 74240205 1 + G A SKCM 74240213 + 74240193 74240233 41 TGCCAGTGGATCGACATAACCGACGTGCAGCCTGGGAACTA TGCCAGTGGATCAACATAACCGACGTGCAGCCTGGGAACTA < 41bp 1 0.631497631142702 1 0.325379520654678 experiment 0.737004737714596 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74240213 chr15:74240205 nonsynonymous SNV 0.698 4 13 hm5C_associated_SNPs_33114 0 0 0 0 2 exosome 1 0.500231428028033 1 0.999537143943934 hm5C_site_33027 DeepMRMD:1;iRNA_m5C:0.999537143943934 33028 chr16 30680186 30680186 1 + C T SKCM 30680193 + 30680173 30680213 41 CTGCACCGCAGTCCTCTGACCTTTCCTGCCTGGGTCCGGCC CTGCACCGCAGTCTTCTGACCTTTCCTGCCTGGGTCCGGCC < 41bp 1 0.0585545147838986 1 0.0213958919048309 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBRS ENSG00000156860 CDS Human protein_coding chr16:30680193 chr16:30680186 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_33115 0 0 1 0 1 chromatin 1 0.500231645759246 1 0.999536708481508 hm5C_site_33028 DeepMRMD:1;iRNA_m5C:0.999536708481508 33029 chr19 13049538 13049538 1 + C T SKCM 13049544 + 13049524 13049564 41 CTCCTCGGCCTGGCCGTCGCCGAGCCTGCCGTCTACTTCAA CTCCTCGGCCTGGCTGTCGCCGAGCCTGCCGTCTACTTCAA < 41bp 1 0.661758121823731 1 0.66342306137085 experiment 0.676483756352539 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049544 chr19:13049538 synonymous SNV . 0 15 hm5C_associated_SNPs_33116 0 0 1 0 1 Ribosome 1 0.500231661974386 0.6731538772583 0.999536676051228 hm5C_site_33029 DeepMRMD:0.6731538772583;iRNA_m5C:0.999536676051228 33030 chr19 13049538 13049538 1 + C T SKCM 13049553 + 13049533 13049573 41 CTGGCCGTCGCCGAGCCTGCCGTCTACTTCAAGGAGCAGTT CTGGCTGTCGCCGAGCCTGCCGTCTACTTCAAGGAGCAGTT < 41bp 1 0.23177145897809 1 0.22746953368187 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13049553 chr19:13049538 synonymous SNV . 0 6 hm5C_associated_SNPs_33117 0 0 1 0 1 Ribosome 1 0.500231643885908 1 0.999536712228183 hm5C_site_33030 DeepMRMD:1;iRNA_m5C:0.999536712228183 33031 chr5 176522656 176522656 1 + T A SKCM 176522651 + 176522631 176522671 41 TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGG TCCTCGGAGCAGTGAGGGGCCGCTCACCTTCCCAGTCCTGG < 41bp 1 0.143401367327738 1 0.0983187556266785 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522651 chr5:176522656 nonsynonymous SNV 0.768 2 26 hm5C_associated_SNPs_33118 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643965975 1 0.999536712068051 hm5C_site_33031 DeepMRMD:1;iRNA_m5C:0.999536712068051 33032 chr5 176522656 176522656 1 + T A SKCM 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCCGCTCACCTTCCCAGTCCTGGTCTCCT < 41bp 1 0.036707424829559 1 0.0403641760349274 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522656 nonsynonymous SNV 0.768 2 20 hm5C_associated_SNPs_33119 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_33032 DeepMRMD:1;iRNA_m5C:0.999536712157815 33033 chr6 35423815 35423815 1 + C T SKCM 35423818 + 35423798 35423838 41 GGCAGGAGGTTGAAATCCCCCCAGGCTCCAGACCCTGAAGA GGCAGGAGGTTGAAATCTCCCCAGGCTCCAGACCCTGAAGA < 41bp 1 0.591029013250842 1 0.843505620956421 experiment 0.817941973498316 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCE ENSG00000112039 CDS Human protein_coding chr6:35423818 chr6:35423815 synonymous SNV . 0 18 hm5C_associated_SNPs_33121 0 0 1 0 0 Ribosome 1 0.500231643921092 0.312988758087158 0.999536712157815 hm5C_site_33033 DeepMRMD:0.312988758087158;iRNA_m5C:0.999536712157815 33034 chr6 35423815 35423815 1 + C T SKCM 35423819 + 35423799 35423839 41 GCAGGAGGTTGAAATCCCCCCAGGCTCCAGACCCTGAAGAA GCAGGAGGTTGAAATCTCCCCAGGCTCCAGACCCTGAAGAA < 41bp 1 0.582303260528678 1 0.660205006599426 experiment 0.835393478942644 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCE ENSG00000112039 CDS Human protein_coding chr6:35423819 chr6:35423815 synonymous SNV . 0 17 hm5C_associated_SNPs_33122 0 0 1 0 0 Ribosome 1 0.500231643921545 0.679589986801148 0.99953671215691 hm5C_site_33034 DeepMRMD:0.679589986801148;iRNA_m5C:0.99953671215691 33035 chr2 177015087 177015087 1 + C T SKCM 177015069 + 177015049 177015089 41 TCTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCGT TCTATATATACCCTGTAGAACCGAATTTGTGTGGTATCTGT < 41bp 1 0.607281649251156 1 0.0779888033866882 experiment 0.785436701497688 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015069 chr2:177015087 . . 0 39 hm5C_associated_SNPs_33123 0 0 1 0 0 unknown 1 0.500231643921273 1 0.999536712157453 hm5C_site_33035 DeepMRMD:1;iRNA_m5C:0.999536712157453 33036 chr2 177015087 177015087 1 + C T SKCM 177015070 + 177015050 177015090 41 CTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCGTA CTATATATACCCTGTAGAACCGAATTTGTGTGGTATCTGTA < 41bp 1 0.375069235833025 1 0.119473874568939 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015070 chr2:177015087 . . 0 38 hm5C_associated_SNPs_33124 0 0 1 0 0 unknown 1 0.500231940354932 1 0.999536119290136 hm5C_site_33036 DeepMRMD:1;iRNA_m5C:0.999536119290136 33037 chr19 18975031 18975031 1 + C T SKCM 18975023 + 18975003 18975043 41 ATGTATGATGCCCGGGAGGCCATCATCCCAGGCTCCGTCTA ATGTATGATGCCCGGGAGGCCATCATCCTAGGCTCCGTCTA < 41bp 1 0.506199142553254 1 0.0751229524612427 experiment 0.987601714893492 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18975023 chr19:18975031 nonsynonymous SNV 0.951 3 29 hm5C_associated_SNPs_33125 0 0 1 0 1 Nucleus 1 0.500231643921115 1 0.999536712157771 hm5C_site_33037 DeepMRMD:1;iRNA_m5C:0.999536712157771 33038 chr19 59060583 59060583 1 + C T SKCM 59060584 + 59060564 59060604 41 GAACCCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGTC GAACCCCTGGTGCCCCACCTCTGGCTGGCATGGCCATTGTC < 41bp 1 0.571110659157556 1 0.522651255130768 experiment 0.857778681684888 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060584 chr19:59060583 synonymous SNV . 0 20 hm5C_associated_SNPs_33126 0 0 1 0 1 Cytosol 1 0.500231644023158 0.954697489738464 0.999536711953683 hm5C_site_33038 DeepMRMD:0.954697489738464;iRNA_m5C:0.999536711953683 33039 chr19 59060583 59060583 1 + C T SKCM 59060588 + 59060568 59060608 41 CCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGTCAAGG CCCTGGTGCCCCACCTCTGGCTGGCATGGCCATTGTCAAGG < 41bp 1 0.47844347260764 1 0.0364223420619965 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060588 chr19:59060583 synonymous SNV . 0 16 hm5C_associated_SNPs_33127 0 0 1 0 1 Cytosol 1 0.500231643921053 1 0.999536712157893 hm5C_site_33039 DeepMRMD:1;iRNA_m5C:0.999536712157893 33040 chr19 59060583 59060583 1 + C T SKCM 59060592 + 59060572 59060612 41 GGTGCCCCACCCCTGGCTGGCATGGCCATTGTCAAGGTAAG GGTGCCCCACCTCTGGCTGGCATGGCCATTGTCAAGGTAAG < 41bp 1 0.155442248698678 1 0.103716641664505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060592 chr19:59060583 synonymous SNV . 0 12 hm5C_associated_SNPs_33128 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33040 DeepMRMD:1;iRNA_m5C:0.999536712157815 33041 chr6 31912780 31912780 1 + C T SKCM 31912772 + 31912752 31912792 41 GGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT GGCAGGAGAATCTGGGGGAGCAGTTTTCTTTGAGCGGAGAT < 41bp 1 0.161462290392578 1 0.289608031511307 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2 ENSG00000166278 CDS Human protein_coding chr6:31912772 chr6:31912780 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_33129 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33041 DeepMRMD:1;iRNA_m5C:0.999536712157815 33042 chr6 31929390 31929390 1 + C T SKCM 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCTCTGTGGAC < 41bp 1 0.265193829307469 1 0.264280259609222 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929390 nonsynonymous SNV 0.605 1 33 hm5C_associated_SNPs_33130 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_33042 DeepMRMD:1;iRNA_m5C:0.999536712157815 33043 chr12 112227679 112227679 1 + G A SKCM 112227678 + 112227658 112227698 41 GGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACAC GGGAAAACCATCCCCATTGACAGAGACTTCTTCAGCTACAC < 41bp 1 0.698957956667367 1 0.805547416210175 experiment 0.602084086665265 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112227678 chr12:112227679 nonsynonymous SNV 0.795 4 22 hm5C_associated_SNPs_33131 0 0 1 0 2 chromatin 1 0.500231643921092 0.38890516757965 0.999536712157815 hm5C_site_33043 DeepMRMD:0.38890516757965;iRNA_m5C:0.999536712157815 33044 chr14 21544735 21544735 1 + C T SKCM 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCTTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT < 41bp 1 0.140350806658048 1 0.112016052007675 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544735 nonsynonymous SNV 0.943 0 4 hm5C_associated_SNPs_33132 0 0 1 0 3 Cytosol 1 0.500231643920361 1 0.999536712159279 hm5C_site_33044 DeepMRMD:1;iRNA_m5C:0.999536712159279 33045 chr16 57786721 57786721 1 + C T SKCM 57786702 + 57786682 57786722 41 TGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGCTGCCT TGGCCCAGGAGCGTCCTCTTCAACCCAGACGGCTGCTGCTT < 41bp 1 0.43385934779962 1 0.189834415912628 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786702 chr16:57786721 synonymous SNV . 0 40 hm5C_associated_SNPs_33133 0 0 1 0 1 Cytosol 1 0.500231602376779 1 0.999536795246443 hm5C_site_33045 DeepMRMD:1;iRNA_m5C:0.999536795246443 33046 chr16 5128006 5128006 1 + C T SKCM 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ATGAAGCTGGGCAGCATGCACTCTCTGTTCAGGGCCCGGTA < 41bp 1 0.420508702377621 1 0.0296281278133392 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5128006 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_33134 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33046 DeepMRMD:1;iRNA_m5C:0.999536712157815 33047 chr5 231076 231076 1 + C T SKCM 231073 + 231053 231093 41 CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAG CCATGATCACCAGGGCAGGCCTTTCTTGCCAGGACCTAGAG < 41bp 1 0.102008506043391 1 0.0595802068710327 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:231073 chr5:231076 nonsynonymous SNV 0.834 1 24 hm5C_associated_SNPs_33135 0 0 1 0 2 Nucleus 1 0.500231643921393 1 0.999536712157215 hm5C_site_33047 DeepMRMD:1;iRNA_m5C:0.999536712157215 33048 chr9 108510368 108510368 1 + C T SKCM 108510356 + 108510336 108510376 41 AATGTGTTTTATTTTCAGCCCTGCCAAGGTAACCCTGCTGG AATGTGTTTTATTTTCAGCCCTGCCAAGGTAATCCTGCTGG < 41bp 1 0.251676044360811 1 0.0616824328899384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM38B ENSG00000095209 CDS Human protein_coding chr9:108510356 chr9:108510368 nonsynonymous SNV 0.874 4 33 hm5C_associated_SNPs_33136 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33048 DeepMRMD:1;iRNA_m5C:0.999536712157815 33049 chr19 42729920 42729920 1 + C T SKCM 42729916 + 42729896 42729936 41 CTCCAAGTCCTTTGCCTCAGCTTCCCGGCTGTCCCGGCACC CTCCAAGTCCTTTGCCTCAGCTTCTCGGCTGTCCCGGCACC < 41bp 1 0.223166804018161 1 0.104952245950699 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF526 ENSG00000167625 CDS Human protein_coding chr19:42729916 chr19:42729920 synonymous SNV . 0 25 hm5C_associated_SNPs_33137 0 0 1 0 0 Cytosol 1 0.500231643921062 1 0.999536712157876 hm5C_site_33049 DeepMRMD:1;iRNA_m5C:0.999536712157876 33050 chr8 144332265 144332265 1 + G A SKCM 144332280 + 144332260 144332300 41 AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCGGATCTT AGGAAAAAACCCTATGAGTGCAGTGAGTGTGGGCGGATCTT < 41bp 1 0.221199596576019 1 0.212874889373779 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP41 ENSG00000181638;ENSG00000264668 CDS Human other chr8:144332280 chr8:144332265 synonymous SNV . 0 6 hm5C_associated_SNPs_33138 0 0 1 0 0 chromatin 1 0.500231644928159 1 0.999536710143683 hm5C_site_33050 DeepMRMD:1;iRNA_m5C:0.999536710143683 33051 chr3 124053179 124053179 1 + C T SKCM 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATTCCTCA < 41bp 1 0.606637768727343 1 0.81840592622757 experiment 0.786724462545315 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053179 nonsynonymous SNV 0.984 3 36 hm5C_associated_SNPs_33139 0 0 0 0 1 nucleoplasm 1 0.500231643921092 0.36318814754486 0.999536712157815 hm5C_site_33051 DeepMRMD:0.36318814754486;iRNA_m5C:0.999536712157815 33052 chr17 65908991 65908991 1 + C T SKCM 65909010 + 65908990 65909030 41 TCCCTGACCACCACGGGAGGCACACTGGTTACATCTATGAC TTCCTGACCACCACGGGAGGCACACTGGTTACATCTATGAC < 41bp 1 0.137374815078036 1 0.0685949623584747 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65909010 chr17:65908991 nonsynonymous SNV 0.781 3 2 hm5C_associated_SNPs_33140 0 0 1 0 0 Cytosol 1 0.500231643948974 1 0.999536712102051 hm5C_site_33052 DeepMRMD:1;iRNA_m5C:0.999536712102051 33053 chr7 129946648 129946648 1 + G A SKCM 129946651 + 129946631 129946671 41 TATCTGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG TATCTGATTACCAGAGGAATCCAGCTATCACCTCCATCTTG < 41bp 1 0.279537577750416 1 0.497182995080948 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946651 chr7:129946648 nonsynonymous SNV 0.997 1 18 hm5C_associated_SNPs_33141 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921046 1 0.999536712157908 hm5C_site_33053 DeepMRMD:1;iRNA_m5C:0.999536712157908 33054 chr12 7177206 7177206 1 + G A SKCM 7177213 + 7177193 7177233 41 ACAGAGGATAATTGGAGGATCCGATGCAGATATTAAAAACT ACAGAGGATAATTAGAGGATCCGATGCAGATATTAAAAACT < 41bp 1 0.0842283351920697 1 0.151225239038467 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C1S ENSG00000182326 CDS Human protein_coding chr12:7177213 chr12:7177206 nonsynonymous SNV 0.068 4 14 hm5C_associated_SNPs_33142 0 0 0 0 1 Nucleus 1 0.500231646066073 1 0.999536707867854 hm5C_site_33054 DeepMRMD:1;iRNA_m5C:0.999536707867854 33055 chr9 135946961 135946961 1 + C T SKCM 135946953 + 135946933 135946973 41 CCGCCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCAC CCGCCCACGGGTGACTCCGGCGCCCCCCTCGTGCCGCCCAC < 41bp 1 0.543012265703687 1 0.754881620407104 experiment 0.913975468592625 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946953 chr9:135946961 nonsynonymous SNV 0.001 3 29 hm5C_associated_SNPs_33145 0 0 0 0 0 exosome 1 0.50023164392112 0.490236759185792 0.999536712157759 hm5C_site_33055 DeepMRMD:0.490236759185792;iRNA_m5C:0.999536712157759 33056 chr9 135946961 135946961 1 + C T SKCM 135946955 + 135946935 135946975 41 GCCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGG GCCCACGGGTGACTCCGGCGCCCCCCTCGTGCCGCCCACGG < 41bp 1 0.291034766843646 1 0.104461997747421 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946955 chr9:135946961 nonsynonymous SNV 0.001 3 27 hm5C_associated_SNPs_33146 0 0 0 0 0 exosome 1 0.50023358113333 1 0.99953283773334 hm5C_site_33056 DeepMRMD:1;iRNA_m5C:0.99953283773334 33057 chr9 135946961 135946961 1 + C T SKCM 135946956 + 135946936 135946976 41 CCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGG CCCACGGGTGACTCCGGCGCCCCCCTCGTGCCGCCCACGGG < 41bp 1 0.244074683294074 1 0.0812743902206421 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946956 chr9:135946961 nonsynonymous SNV 0.001 3 26 hm5C_associated_SNPs_33147 0 0 0 0 0 exosome 1 0.500231659847843 1 0.999536680304313 hm5C_site_33057 DeepMRMD:1;iRNA_m5C:0.999536680304313 33058 chr9 135946961 135946961 1 + C T SKCM 135946957 + 135946937 135946977 41 CCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGT CCACGGGTGACTCCGGCGCCCCCCTCGTGCCGCCCACGGGT < 41bp 1 0.317631505784609 1 0.068794846534729 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946957 chr9:135946961 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_33148 0 0 0 0 0 exosome 1 0.500234973856392 1 0.999530052287215 hm5C_site_33058 DeepMRMD:1;iRNA_m5C:0.999530052287215 33059 chr9 135946961 135946961 1 + C T SKCM 135946958 + 135946938 135946978 41 CACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTG CACGGGTGACTCCGGCGCCCCCCTCGTGCCGCCCACGGGTG < 41bp 1 0.152352715800099 1 0.0802958309650421 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946958 chr9:135946961 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_33149 0 0 0 0 0 exosome 1 0.500230760735009 1 0.999538478529981 hm5C_site_33059 DeepMRMD:1;iRNA_m5C:0.999538478529981 33060 chr9 135946961 135946961 1 + C T SKCM 135946959 + 135946939 135946979 41 ACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGA ACGGGTGACTCCGGCGCCCCCCTCGTGCCGCCCACGGGTGA < 41bp 1 0.431874376453909 1 0.232124507427216 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946959 chr9:135946961 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_33150 0 0 0 0 0 exosome 1 0.500435023792712 1 0.999129952414575 hm5C_site_33060 DeepMRMD:1;iRNA_m5C:0.999129952414575 33061 chr9 135946961 135946961 1 + C T SKCM 135946960 + 135946940 135946980 41 CGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGAC CGGGTGACTCCGGCGCCCCCCTCGTGCCGCCCACGGGTGAC < 41bp 1 0.686946335565562 1 0.375193268060684 experiment 0.626107328868877 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946960 chr9:135946961 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_33151 0 0 0 0 0 exosome 1 0.500236085731009 1 0.999527828537982 hm5C_site_33061 DeepMRMD:1;iRNA_m5C:0.999527828537982 33062 chr9 135946961 135946961 1 + C T SKCM 135946962 + 135946942 135946982 41 GGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTC GGTGACTCCGGCGCCCCCCTCGTGCCGCCCACGGGTGACTC < 41bp 1 0.521729802873979 1 0.687426149845123 experiment 0.956540394252042 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946962 chr9:135946961 nonsynonymous SNV 0.001 3 20 hm5C_associated_SNPs_33152 0 0 0 0 0 exosome 1 0.500231224252056 0.625147700309754 0.999537551495888 hm5C_site_33062 DeepMRMD:0.625147700309754;iRNA_m5C:0.999537551495888 33063 chr9 135946961 135946961 1 + C T SKCM 135946966 + 135946946 135946986 41 ACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGG ACTCCGGCGCCCCCCTCGTGCCGCCCACGGGTGACTCCGGG < 41bp 1 0.340312691998821 1 0.412928581237793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946966 chr9:135946961 nonsynonymous SNV 0.001 3 16 hm5C_associated_SNPs_33153 0 0 0 0 0 exosome 1 0.500231643686717 1 0.999536712626566 hm5C_site_33063 DeepMRMD:1;iRNA_m5C:0.999536712626566 33064 chr9 135946961 135946961 1 + C T SKCM 135946967 + 135946947 135946987 41 CTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGG CTCCGGCGCCCCCCTCGTGCCGCCCACGGGTGACTCCGGGG < 41bp 1 0.48292459190975 1 0.130598843097687 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946967 chr9:135946961 nonsynonymous SNV 0.001 3 15 hm5C_associated_SNPs_33154 0 0 0 0 0 exosome 1 0.50023161173121 1 0.999536776537581 hm5C_site_33064 DeepMRMD:1;iRNA_m5C:0.999536776537581 33065 chr9 135946961 135946961 1 + C T SKCM 135946969 + 135946949 135946989 41 CCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC CCGGCGCCCCCCTCGTGCCGCCCACGGGTGACTCCGGGGCC < 41bp 1 0.220636434256722 1 0.108280718326569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946969 chr9:135946961 nonsynonymous SNV 0.001 3 13 hm5C_associated_SNPs_33155 0 0 0 0 0 exosome 1 0.50023164339963 1 0.999536713200741 hm5C_site_33065 DeepMRMD:1;iRNA_m5C:0.999536713200741 33066 chr9 135946961 135946961 1 + C T SKCM 135946970 + 135946950 135946990 41 CGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC CGGCGCCCCCCTCGTGCCGCCCACGGGTGACTCCGGGGCCC < 41bp 1 0.448376601104962 1 0.201971590518951 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946970 chr9:135946961 nonsynonymous SNV 0.001 3 12 hm5C_associated_SNPs_33156 0 0 0 0 0 exosome 1 0.500231643921062 1 0.999536712157875 hm5C_site_33066 DeepMRMD:1;iRNA_m5C:0.999536712157875 33067 chr13 26923280 26923280 1 + G A SKCM 26923264 + 26923244 26923284 41 TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGT TCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAAGTGT < 41bp 1 0.456490067960282 1 0.23614838719368 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK8 ENSG00000132964 CDS Human protein_coding chr13:26923264 chr13:26923280 synonymous SNV . 0 37 hm5C_associated_SNPs_33158 0 0 1 0 2 Cytosol 1 0.500229119928866 1 0.999541760142268 hm5C_site_33067 DeepMRMD:1;iRNA_m5C:0.999541760142268 33068 chr16 29811295 29811295 1 + C T SKCM 29811301 + 29811281 29811321 41 GAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGG GAGGCAAAGAGAGCTCGAGGCCCTGAGGAAGAGGAGATCGG < 41bp 1 0.137687037363034 1 0.103133380413055 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811301 chr16:29811295 synonymous SNV . 0 15 hm5C_associated_SNPs_33159 0 0 1 0 2 Cytosol 1 0.500231643921457 1 0.999536712157085 hm5C_site_33068 DeepMRMD:1;iRNA_m5C:0.999536712157085 33069 chr17 41345501 41345501 1 + C T SKCM 41345492 + 41345472 41345512 41 TGCCCCAGCCTTGGAGGGAACGTATACTTCCCATTGGCGTC TGCCCCAGCCTTGGAGGGAACGTATACTTTCCATTGGCGTC < 41bp 1 0.201788874687713 1 0.1035096347332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41345492 chr17:41345501 nonsynonymous SNV 0.983 4 30 hm5C_associated_SNPs_33160 0 0 1 0 0 Cytosol 1 0.500231643920976 1 0.999536712158049 hm5C_site_33069 DeepMRMD:1;iRNA_m5C:0.999536712158049 33070 chr1 145539064 145539064 1 + C T SKCM 145539084 + 145539064 145539104 41 CTATCACTGTCTCAAGTCATCACTAACAATGTGAGTCTGGT TTATCACTGTCTCAAGTCATCACTAACAATGTGAGTCTGGT < 41bp 1 0.109493557013305 1 0.236164301633835 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539084 chr1:145539064 synonymous SNV . 0 1 hm5C_associated_SNPs_33161 0 0 0 0 2 exosome 1 0.500231484265892 1 0.999537031468216 hm5C_site_33070 DeepMRMD:1;iRNA_m5C:0.999537031468216 33071 chr16 66976133 66976133 1 + C T SKCM 66976124 + 66976104 66976144 41 GCGGACTCCATGTTTGTGATCCCTGCACTCCAAGTAGCACA GCGGACTCCATGTTTGTGATCCCTGCACTTCAAGTAGCACA < 41bp 1 0.0814953168026844 1 0.0394364297389984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES2 ENSG00000172831 CDS Human protein_coding chr16:66976124 chr16:66976133 synonymous SNV . 0 30 hm5C_associated_SNPs_33162 0 0 1 0 0 Cytosol 1 0.500231645079649 1 0.999536709840703 hm5C_site_33071 DeepMRMD:1;iRNA_m5C:0.999536709840703 33072 chr16 29811294 29811294 1 + C T SKCM 29811295 + 29811275 29811315 41 CCACCAGAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGA CCACCAGAGGCAAAGAGAGTCCGAGGCCCTGAGGAAGAGGA < 41bp 1 0.276720593373582 1 0.723181188106537 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811295 chr16:29811294 nonsynonymous SNV 0.968 0 20 hm5C_associated_SNPs_33163 0 0 1 0 2 Cytosol 1 0.500231643922369 0.553637623786926 0.999536712155263 hm5C_site_33072 DeepMRMD:0.553637623786926;iRNA_m5C:0.999536712155263 33073 chr16 29811294 29811294 1 + C T SKCM 29811301 + 29811281 29811321 41 GAGGCAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGG GAGGCAAAGAGAGTCCGAGGCCCTGAGGAAGAGGAGATCGG < 41bp 1 0.132215936773211 1 0.0988064408302307 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811301 chr16:29811294 nonsynonymous SNV 0.968 0 14 hm5C_associated_SNPs_33164 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33073 DeepMRMD:1;iRNA_m5C:0.999536712157815 33074 chr7 4830461 4830461 1 + C T SKCM 4830446 + 4830426 4830466 41 TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCACCGTGC TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCATCGTGC < 41bp 1 0.0703061909291319 1 0.0228690505027771 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4830446 chr7:4830461 nonsynonymous SNV 0.024 3 36 hm5C_associated_SNPs_33165 0 0 1 0 1 chromatin 1 0.500231643921088 1 0.999536712157824 hm5C_site_33074 DeepMRMD:1;iRNA_m5C:0.999536712157824 33075 chrX 48759695 48759695 1 + G A SKCM 48759703 + 48759683 48759723 41 GACAGGGAACGGGATCGGGACCGCGGGTATGACAAGGCAGA GACAGGGAACGGAATCGGGACCGCGGGTATGACAAGGCAGA < 41bp 1 0.405405165895672 1 0.112214356660843 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759703 chrX:48759695 nonsynonymous SNV 0.972 1 13 hm5C_associated_SNPs_33166 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_33075 DeepMRMD:1;iRNA_m5C:0.999536712157814 33076 chr19 36128155 36128155 1 + A T SKCM 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCTAGGTGAT < 41bp 1 0.220535340735172 1 0.498431533575058 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128155 stopgain 1.000 1 34 hm5C_associated_SNPs_33167 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33076 DeepMRMD:1;iRNA_m5C:0.999536712157815 33077 chr2 220366636 220366636 1 + C T SKCM 220366650 + 220366630 220366670 41 CCAGATCCTGGCTGGGAGCCCCGAGGCATTCTTCGTGCTCA CCAGATTCTGGCTGGGAGCCCCGAGGCATTCTTCGTGCTCA < 41bp 1 0.470136957367429 1 0.379182100296021 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GMPPA ENSG00000144591 CDS Human protein_coding chr2:220366650 chr2:220366636 synonymous SNV . 0 7 hm5C_associated_SNPs_33168 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_33077 DeepMRMD:1;iRNA_m5C:0.999536712157815 33078 chr2 160053229 160053229 1 + C T SKCM 160053224 + 160053204 160053244 41 CTTGTGAGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTG CTTGTGAGTGGTCGCCGGGTCCTCCTCAGCCAGGCACCCTG < 41bp 1 0.104496318173053 1 0.0434953570365906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160053224 chr2:160053229 synonymous SNV . 0 26 hm5C_associated_SNPs_33169 0 0 1 0 1 Nucleus 1 0.500231643921097 1 0.999536712157805 hm5C_site_33078 DeepMRMD:1;iRNA_m5C:0.999536712157805 33079 chr2 160053229 160053229 1 + C T SKCM 160053230 + 160053210 160053250 41 AGTGGTCGCCGGGTCCTCCCCAGCCAGGCACCCTGAGGAAG AGTGGTCGCCGGGTCCTCCTCAGCCAGGCACCCTGAGGAAG < 41bp 1 0.628359616359399 1 0.513895750045776 experiment 0.743280767281203 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160053230 chr2:160053229 synonymous SNV . 0 20 hm5C_associated_SNPs_33170 0 0 1 0 1 Nucleus 1 0.500231643921092 0.972208499908448 0.999536712157817 hm5C_site_33079 DeepMRMD:0.972208499908448;iRNA_m5C:0.999536712157817 33080 chr17 4498564 4498564 1 + G A SKCM 4498575 + 4498555 4498595 41 CGCACCTCGGAGGCGCAGGCCCGGAAAGCATTGTTTGAGAA CGCACCTCGAAGGCGCAGGCCCGGAAAGCATTGTTTGAGAA < 41bp 1 0.610990237160586 1 0.15576234459877 experiment 0.778019525678828 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4498575 chr17:4498564 nonsynonymous SNV 0.967 1 10 hm5C_associated_SNPs_33171 0 0 0 0 1 insoluble cytoplasm 1 0.50023164389858 1 0.99953671220284 hm5C_site_33080 DeepMRMD:1;iRNA_m5C:0.99953671220284 33081 chr1 206821315 206821315 1 + G A SKCM 206821305 + 206821285 206821325 41 CGTCAAGCAGCTGAGGAGATCCGGATTTTGGAGCATCTTAA CGTCAAGCAGCTGAGGAGATCCGGATTTTGAAGCATCTTAA < 41bp 1 0.63814112012906 1 0.708385705947876 experiment 0.72371775974188 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYRK3 ENSG00000143479 CDS Human protein_coding chr1:206821305 chr1:206821315 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_33172 0 0 1 0 0 Cytosol 1 0.50023164391774 0.583228588104248 0.999536712164521 hm5C_site_33081 DeepMRMD:0.583228588104248;iRNA_m5C:0.999536712164521 33082 chr16 28994599 28994599 1 + C T SKCM 28994609 + 28994589 28994629 41 GGAGCCCCTACCTCATTGGCCTGGTGAGCATTATTTCTTGG GGAGCCCCTATCTCATTGGCCTGGTGAGCATTATTTCTTGG < 41bp 1 0.505811788557597 1 0.0740248560905457 experiment 0.988376422884805 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994609 chr16:28994599 synonymous SNV . 0 11 hm5C_associated_SNPs_33173 0 0 1 0 2 chromatin 1 0.500231644023897 1 0.999536711952206 hm5C_site_33082 DeepMRMD:1;iRNA_m5C:0.999536711952206 33083 chr12 132514418 132514418 1 + C T SKCM 132514398 + 132514378 132514418 41 GCAGCTGCGGCAGACCACGGCTCCACGCCTGCTGCAGTTCC GCAGCTGCGGCAGACCACGGCTCCACGCCTGCTGCAGTTCT < 41bp 1 0.449940629918484 1 0.977134585380554 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132514398 chr12:132514418 nonsynonymous SNV 0.867 4 41 hm5C_associated_SNPs_33174 0 0 1 0 1 Cytosol 1 0.500231643921092 0.045730829238892 0.999536712157815 hm5C_site_33083 DeepMRMD:0.045730829238892;iRNA_m5C:0.999536712157815 33084 chr3 16312571 16312571 1 + C T SKCM 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACACTCAGCACTTTGCGCCACCTTACTTTAACCAGGTGA < 41bp 1 0.20883431791402 1 0.201472550630569 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312571 synonymous SNV . 0 30 hm5C_associated_SNPs_33175 0 0 1 0 1 Ribosome 1 0.500231632191976 1 0.999536735616049 hm5C_site_33084 DeepMRMD:1;iRNA_m5C:0.999536735616049 33085 chr11 119054038 119054038 1 + C T SKCM 119054023 + 119054003 119054043 41 GGGTTCAGCGACACCTTGAGCTCCTACTGCGGGATCTGGAA GGGTTCAGCGACACCTTGAGCTCCTACTGCGGGATTTGGAA < 41bp 1 0.281042971200202 1 0.176680624485016 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119054023 chr11:119054038 synonymous SNV . 0 36 hm5C_associated_SNPs_33176 0 0 0 0 0 exosome 1 0.500231643921158 1 0.999536712157683 hm5C_site_33085 DeepMRMD:1;iRNA_m5C:0.999536712157683 33086 chr22 39078936 39078936 1 + C T SKCM 39078940 + 39078920 39078960 41 CTTTATGATCCTGGTTCTTCCCGTTGTCTTTGAGACGGAGA CTTTATGATCCTGGTTTTTCCCGTTGTCTTTGAGACGGAGA < 41bp 1 0.325450246601276 1 0.174127250909805 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078940 chr22:39078936 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_33177 0 0 1 0 2 Ribosome 1 0.500231643922114 1 0.999536712155772 hm5C_site_33086 DeepMRMD:1;iRNA_m5C:0.999536712155772 33087 chr9 131843440 131843440 1 + C T SKCM 131843453 + 131843433 131843473 41 CGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC CGCTCCCTGCTTCATGGCGGCCGGTGACCCTCACCCACGTC < 41bp 1 0.370805002071033 1 0.292313039302826 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131843453 chr9:131843440 synonymous SNV . 0 8 hm5C_associated_SNPs_33178 0 0 1 0 1 Ribosome 1 0.500232553321952 1 0.999534893356096 hm5C_site_33087 DeepMRMD:1;iRNA_m5C:0.999534893356096 33088 chr2 241514990 241514990 1 + C T SKCM 241514997 + 241514977 241515017 41 TCCTGAGCTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC TCCTGAGCTTCTTTCCGGAGCTGAAGGAGCAGAGCGTGGAC < 41bp 1 0.584601003223491 1 0.26788055896759 experiment 0.830797993553018 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514997 chr2:241514990 synonymous SNV . 0 14 hm5C_associated_SNPs_33179 0 0 1 0 1 chromatin 1 0.500231643922465 1 0.999536712155069 hm5C_site_33088 DeepMRMD:1;iRNA_m5C:0.999536712155069 33089 chr8 104342114 104342114 1 + C T SKCM 104342108 + 104342088 104342128 41 CAAGAAACTTTGACAGAAATCCAAACCTCACCAGAAACATC CAAGAAACTTTGACAGAAATCCAAACTTCACCAGAAACATC < 41bp 1 0.390375399799174 1 0.112484246492386 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104342108 chr8:104342114 synonymous SNV . 0 27 hm5C_associated_SNPs_33180 0 0 1 0 0 Ribosome 1 0.500231743658769 1 0.999536512682462 hm5C_site_33089 DeepMRMD:1;iRNA_m5C:0.999536512682462 33090 chr1 204092086 204092086 1 + C T SKCM 204092082 + 204092062 204092102 41 GATGGCTCCCCCAACACCCCCTTCCGTAAGGTATGGTCCCC GATGGCTCCCCCAACACCCCCTTCTGTAAGGTATGGTCCCC < 41bp 1 0.148882499912067 1 0.0899553298950195 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SOX13 ENSG00000143842 CDS Human protein_coding chr1:204092082 chr1:204092086 nonsynonymous SNV 0.600 5 25 hm5C_associated_SNPs_33181 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33090 DeepMRMD:1;iRNA_m5C:0.999536712157815 33091 chr1 204092085 204092085 1 + C A SKCM 204092082 + 204092062 204092102 41 GATGGCTCCCCCAACACCCCCTTCCGTAAGGTATGGTCCCC GATGGCTCCCCCAACACCCCCTTACGTAAGGTATGGTCCCC < 41bp 1 0.0824903227696969 1 0.090589165687561 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SOX13 ENSG00000143842 CDS Human protein_coding chr1:204092082 chr1:204092085 nonsynonymous SNV 0.611 2 24 hm5C_associated_SNPs_33182 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33091 DeepMRMD:1;iRNA_m5C:0.999536712157815 33092 chr19 16204368 16204368 1 + A G SKCM 16204363 + 16204343 16204383 41 CAGTATTCTGAAAAGGAGGACAAATATGAAGAAGAAATTAA CAGTATTCTGAAAAGGAGGACAAATGTGAAGAAGAAATTAA < 41bp 1 0.0683312552533882 1 0.240966767072678 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM4 ENSG00000167460 CDS Human protein_coding chr19:16204363 chr19:16204368 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_33183 0 0 1 0 2 Ribosome 1 0.500231651900618 1 0.999536696198763 hm5C_site_33092 DeepMRMD:1;iRNA_m5C:0.999536696198763 33093 chr7 79842145 79842145 1 + C T SKCM 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAAATTAAAAAGAGCCCTCTCACTATATGCTATCCAG < 41bp 1 0.131898041021775 1 0.0796118676662445 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842145 synonymous SNV . 0 10 hm5C_associated_SNPs_33184 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33093 DeepMRMD:1;iRNA_m5C:0.999536712157815 33094 chr2 11312055 11312055 1 + T G SKCM 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCGATGTACTTTCATCAGCGCGGCCAGTAAGTT < 41bp 1 0.597405384804364 1 0.144860744476318 experiment 0.805189230391272 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312055 nonsynonymous SNV 0.008 3 11 hm5C_associated_SNPs_33185 0 0 0 0 1 Ribosome 1 0.50023166058068 1 0.999536678838639 hm5C_site_33094 DeepMRMD:1;iRNA_m5C:0.999536678838639 33095 chr15 64966551 64966551 1 + C T SKCM 64966550 + 64966530 64966570 41 GTCCTAATTGACTGTCCCCACCCAAACTGCAACAAGAAGTA GTCCTAATTGACTGTCCCCACTCAAACTGCAACAAGAAGTA < 41bp 1 0.42838541076358 1 0.797447383403778 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF609 ENSG00000180357 CDS Human protein_coding chr15:64966550 chr15:64966551 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_33186 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643960734 0.405105233192444 0.999536712078533 hm5C_site_33095 DeepMRMD:0.405105233192444;iRNA_m5C:0.999536712078533 33096 chr5 112176267 112176267 1 + A T SKCM 112176287 + 112176267 112176307 41 ATCTAACAATCGAATCCCCTCCAAATGAGTTAGCTGCTGGA TTCTAACAATCGAATCCCCTCCAAATGAGTTAGCTGCTGGA < 41bp 1 0.107541842418265 1 0.46482527256012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APC ENSG00000134982 CDS Human protein_coding chr5:112176287 chr5:112176267 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_33187 0 0 0 0 0 Cytosol 1 0.500231643947897 1 0.999536712104205 hm5C_site_33096 DeepMRMD:1;iRNA_m5C:0.999536712104205 33097 chrX 73042618 73042618 1 + G A SKCM 73042631 - 73042611 73042651 41 AGAGTGGGAATAAGAGAGGGCTTTTTATTTTTTCGTTCATA AGAGTGGGAATAAGAGAGGGCTTTTTATTTTTTTGTTCATA < 41bp 1 0.0101767376406145 1 0.0230987966060638 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042631 chrX:73042618 . . 0 34 hm5C_associated_SNPs_33188 0 0 1 0 0 unknown 1 0.500231643896091 1 0.999536712207817 hm5C_site_33097 DeepMRMD:1;iRNA_m5C:0.999536712207817 33098 chr11 63719957 63719957 1 + C T SKCM 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCATTGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.656035775939326 1 0.603570818901062 experiment 0.687928448121349 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719957 synonymous SNV . 0 9 hm5C_associated_SNPs_33189 0 0 1 0 2 Ribosome 1 0.500231643921099 0.792858362197876 0.999536712157802 hm5C_site_33098 DeepMRMD:0.792858362197876;iRNA_m5C:0.999536712157802 33099 chr2 32897411 32897411 1 + G A SKCM 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGAATCTG < 41bp 1 0.17786663465723 1 0.102902591228485 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897411 nonsynonymous SNV 0.720 1 36 hm5C_associated_SNPs_33190 0 0 1 0 2 Nucleus 1 0.500231859758393 1 0.999536280483213 hm5C_site_33099 DeepMRMD:1;iRNA_m5C:0.999536280483213 33100 chr19 49967944 49967944 1 + C T SKCM 49967942 + 49967922 49967962 41 CCTGCCCGGCTGTCCTGCCTCTCCAAGAACCTGAACTATGA CCTGCCCGGCTGTCCTGCCTCTTCAAGAACCTGAACTATGA < 41bp 1 0.505943044563637 1 0.72943776845932 experiment 0.988113910872725 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967942 chr19:49967944 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_33191 0 0 0 0 2 Ribosome 1 0.500231643921095 0.54112446308136 0.999536712157809 hm5C_site_33100 DeepMRMD:0.54112446308136;iRNA_m5C:0.999536712157809 33101 chr12 53427596 53427596 1 + C T SKCM 53427592 + 53427572 53427612 41 AAGTTTCATTTAACTTAGGTCCCCCCCAAAGACCCAAACTG AAGTTTCATTTAACTTAGGTCCCCTCCAAAGACCCAAACTG < 41bp 1 0.0609808319369322 1 0.0955252945423126 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53427592 chr12:53427596 nonsynonymous SNV 0.896 1 25 hm5C_associated_SNPs_33192 0 0 1 0 1 Cytosol 1 0.500231643921086 1 0.999536712157828 hm5C_site_33101 DeepMRMD:1;iRNA_m5C:0.999536712157828 33102 chr11 75279839 75279839 1 + C T SKCM 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTTCTATACCGTGGGTGTCATGATGATGCACCGGACAGG < 41bp 1 0.56349209290398 1 0.177629977464676 experiment 0.873015814192039 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279839 nonsynonymous SNV 0.984 3 5 hm5C_associated_SNPs_33193 0 0 1 0 2 Ribosome 1 0.500231643492874 1 0.999536713014253 hm5C_site_33102 DeepMRMD:1;iRNA_m5C:0.999536713014253 33103 chr19 35504577 35504577 1 + C T SKCM 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGTAGCGA < 41bp 1 0.0170689314670796 1 0.0491397380828857 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504577 synonymous SNV . 0 36 hm5C_associated_SNPs_33194 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921098 1 0.999536712157804 hm5C_site_33103 DeepMRMD:1;iRNA_m5C:0.999536712157804 33104 chr7 142460771 142460771 1 + C T SKCM 142460757 + 142460737 142460777 41 GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTTCTGGGG < 41bp 1 0.293658750136817 1 0.470351427793503 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460757 chr7:142460771 nonsynonymous SNV 0.233 5 35 hm5C_associated_SNPs_33196 0 0 0 0 0 Cytosol 1 0.50023164292753 1 0.99953671414494 hm5C_site_33104 DeepMRMD:1;iRNA_m5C:0.99953671414494 33105 chr7 142460771 142460771 1 + C T SKCM 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTTCTGGGGT < 41bp 1 0.455376287826761 1 0.45118847489357 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460771 nonsynonymous SNV 0.233 5 34 hm5C_associated_SNPs_33197 0 0 0 0 0 Cytosol 1 0.500231747427263 1 0.999536505145473 hm5C_site_33105 DeepMRMD:1;iRNA_m5C:0.999536505145473 33106 chr7 142460771 142460771 1 + C T SKCM 142460769 + 142460749 142460789 41 GGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC GGACAGCTCCAAGGAGTTGTCTTCTGGGGTGATGGCTGTGC < 41bp 1 0.330097027800522 1 0.377270817756653 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460769 chr7:142460771 nonsynonymous SNV 0.233 5 23 hm5C_associated_SNPs_33198 0 0 0 0 0 Cytosol 1 0.500231643887691 1 0.999536712224619 hm5C_site_33106 DeepMRMD:1;iRNA_m5C:0.999536712224619 33107 chr7 142460771 142460771 1 + C T SKCM 142460784 + 142460764 142460804 41 GTTGTCTCCTGGGGTGATGGCTGTGCCCAGAAGAACAAGCC GTTGTCTTCTGGGGTGATGGCTGTGCCCAGAAGAACAAGCC < 41bp 1 0.397314982863357 1 0.508443772792816 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460784 chr7:142460771 nonsynonymous SNV 0.233 5 8 hm5C_associated_SNPs_33199 0 0 0 0 0 Cytosol 1 0.500231643919497 0.983112454414368 0.999536712161007 hm5C_site_33107 DeepMRMD:0.983112454414368;iRNA_m5C:0.999536712161007 33108 chrX 73045887 73045887 1 + C T SKCM 73045871 - 73045851 73045891 41 CCTGGGACAAAGCGAGGTCCCAAGGGGACAGCCTGAACTCC CCTGAGACAAAGCGAGGTCCCAAGGGGACAGCCTGAACTCC < 41bp 1 0.670184184123966 1 0.806113660335541 experiment 0.659631631752068 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045871 chrX:73045887 . . 0 5 hm5C_associated_SNPs_33200 0 0 1 0 0 unknown 1 0.500231643921097 0.387772679328918 0.999536712157806 hm5C_site_33108 DeepMRMD:0.387772679328918;iRNA_m5C:0.999536712157806 33109 chrX 73045887 73045887 1 + C T SKCM 73045873 - 73045853 73045893 41 TGCCTGGGACAAAGCGAGGTCCCAAGGGGACAGCCTGAACT TGCCTGAGACAAAGCGAGGTCCCAAGGGGACAGCCTGAACT < 41bp 1 0.250504213257256 1 0.350282818078995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045873 chrX:73045887 . . 0 7 hm5C_associated_SNPs_33201 0 0 1 0 0 unknown 1 0.500231643921081 1 0.999536712157838 hm5C_site_33109 DeepMRMD:1;iRNA_m5C:0.999536712157838 33110 chrX 73045887 73045887 1 + C T SKCM 73045890 - 73045870 73045910 41 TATGGAAAGGGTGACTGTGCCTGGGACAAAGCGAGGTCCCA TATGGAAAGGGTGACTGTGCCTGAGACAAAGCGAGGTCCCA < 41bp 1 0.496117250152511 1 0.139786332845688 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045890 chrX:73045887 . . 0 24 hm5C_associated_SNPs_33202 0 0 1 0 0 unknown 1 0.500231643948059 1 0.999536712103883 hm5C_site_33110 DeepMRMD:1;iRNA_m5C:0.999536712103883 33111 chrX 73045887 73045887 1 + C T SKCM 73045891 - 73045871 73045911 41 TTATGGAAAGGGTGACTGTGCCTGGGACAAAGCGAGGTCCC TTATGGAAAGGGTGACTGTGCCTGAGACAAAGCGAGGTCCC < 41bp 1 0.39633346188479 1 0.0893926620483398 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045891 chrX:73045887 . . 0 25 hm5C_associated_SNPs_33203 0 0 1 0 0 unknown 1 0.500231643923004 1 0.999536712153993 hm5C_site_33111 DeepMRMD:1;iRNA_m5C:0.999536712153993 33112 chrX 73045887 73045887 1 + C T SKCM 73045896 - 73045876 73045916 41 GATGGTTATGGAAAGGGTGACTGTGCCTGGGACAAAGCGAG GATGGTTATGGAAAGGGTGACTGTGCCTGAGACAAAGCGAG < 41bp 1 0.211213601782905 1 0.0962962508201599 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045896 chrX:73045887 . . 0 30 hm5C_associated_SNPs_33204 0 0 1 0 0 unknown 1 0.500232543529306 1 0.999534912941387 hm5C_site_33112 DeepMRMD:1;iRNA_m5C:0.999534912941387 33113 chr1 39776643 39776643 1 + G A SKCM 39776662 + 39776642 39776682 41 GGACAATGCATTAAGGATTGCAGAGCAAGAGGTAAGCCCTA GAACAATGCATTAAGGATTGCAGAGCAAGAGGTAAGCCCTA < 41bp 1 0.187831186838639 1 0.270542800426483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39776662 chr1:39776643 nonsynonymous SNV 0.965 1 2 hm5C_associated_SNPs_33205 0 0 1 0 1 Endoplasmic reticulum 1 0.500231768413143 1 0.999536463173714 hm5C_site_33113 DeepMRMD:1;iRNA_m5C:0.999536463173714 33114 chr21 46900040 46900040 1 + C T SKCM 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCCTCCAGGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0536660651901608 1 0.0641683340072632 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900040 synonymous SNV . 0 13 hm5C_associated_SNPs_33206 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33114 DeepMRMD:1;iRNA_m5C:0.999536712157815 33115 chr1 206902126 206902126 1 + C T SKCM 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATTGTACGGATCGTGGATGTGTACGAGAATCT < 41bp 1 0.459849010813321 1 0.118656665086746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902126 synonymous SNV . 0 12 hm5C_associated_SNPs_33207 0 0 1 0 2 Ribosome 1 0.500242237307991 1 0.999515525384018 hm5C_site_33115 DeepMRMD:1;iRNA_m5C:0.999515525384018 33116 chr3 50255194 50255194 1 + G A SKCM 50255191 + 50255171 50255211 41 AACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCT AACTTCAGCCACGTGGAGATCGTAAAGGAGAAGGTGCAGCT < 41bp 1 0.501784481548702 1 0.32421749830246 experiment 0.996431036902596 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255191 chr3:50255194 . . 0 24 hm5C_associated_SNPs_33208 0 0 0 0 2 exosome 1 0.500232098353643 1 0.999535803292714 hm5C_site_33116 DeepMRMD:1;iRNA_m5C:0.999535803292714 33117 chr3 41278184 41278184 1 + C T SKCM 41278166 + 41278146 41278186 41 TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGCCAA TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGCTAA < 41bp 1 0.337573446688026 1 0.153887927532196 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41278166 chr3:41278184 nonsynonymous SNV 0.981 2 39 hm5C_associated_SNPs_33209 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_33117 DeepMRMD:1;iRNA_m5C:0.999536712157812 33118 chr8 121259933 121259933 1 + C T SKCM 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCCATCTTTCCCGGTGAAAGGCTATA < 41bp 1 0.0298400703794893 1 0.0758075714111328 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259933 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_33210 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33118 DeepMRMD:1;iRNA_m5C:0.999536712157815 33119 chr8 121259933 121259933 1 + C T SKCM 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTTCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.471226172632473 1 0.120960712432861 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259933 nonsynonymous SNV 0.008 0 20 hm5C_associated_SNPs_33211 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33119 DeepMRMD:1;iRNA_m5C:0.999536712157815 33120 chr3 41278183 41278183 1 + C T SKCM 41278166 + 41278146 41278186 41 TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGCCAA TTCAGTTGAGCTGACCAGCTCTCTCTTCAGAACAGAGTCAA < 41bp 1 0.343425333871698 1 0.210598796606064 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41278166 chr3:41278183 nonsynonymous SNV 0.988 1 38 hm5C_associated_SNPs_33212 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33120 DeepMRMD:1;iRNA_m5C:0.999536712157815 33121 chr13 94680006 94680006 1 + C T SKCM 94679996 + 94679976 94680016 41 TCTGCAGGTCAGCCCAACCCCAGGGTGTATCCGTGCCCTCA TCTGCAGGTCAGCCCAACCCCAGGGTGTATTCGTGCCCTCA < 41bp 1 0.657582295437817 1 0.855783224105835 experiment 0.684835409124366 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:94679996 chr13:94680006 synonymous SNV . 0 31 hm5C_associated_SNPs_33213 0 0 0 0 1 Ribosome 1 0.500231643921092 0.28843355178833 0.999536712157815 hm5C_site_33121 DeepMRMD:0.28843355178833;iRNA_m5C:0.999536712157815 33122 chr6 44197193 44197193 1 + C T SKCM 44197173 + 44197153 44197193 41 TCATGCTGGGTCTGGGAACGCTGCTCCCGTGGAATTTTTTC TCATGCTGGGTCTGGGAACGCTGCTCCCGTGGAATTTTTTT < 41bp 1 0.402759526655685 1 0.119780629873276 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44197173 chr6:44197193 synonymous SNV . 0 41 hm5C_associated_SNPs_33214 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164392125 1 0.9995367121575 hm5C_site_33122 DeepMRMD:1;iRNA_m5C:0.9995367121575 33123 chr3 126751319 126751319 1 + C T SKCM 126751338 + 126751318 126751358 41 TCGGTGGTGGCCCAGACCTTCATGGACTCCTGCTCCACCTC TTGGTGGTGGCCCAGACCTTCATGGACTCCTGCTCCACCTC < 41bp 1 0.331081233960043 1 0.238184988498688 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751338 chr3:126751319 nonsynonymous SNV 0.966 4 2 hm5C_associated_SNPs_33215 0 0 1 0 1 Ribosome 1 0.50023164392139 1 0.99953671215722 hm5C_site_33123 DeepMRMD:1;iRNA_m5C:0.99953671215722 33124 chr1 162725007 162725007 1 + T C SKCM 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCATTGCAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA < 41bp 1 0.423647399953985 1 0.641074955463409 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725007 nonsynonymous SNV 0.937 3 8 hm5C_associated_SNPs_33216 0 0 0 0 2 nucleolus 1 0.500231643796444 0.717850089073182 0.999536712407112 hm5C_site_33124 DeepMRMD:0.717850089073182;iRNA_m5C:0.999536712407112 33125 chr8 28574278 28574278 1 + C T SKCM 28574271 + 28574251 28574291 41 CGTTTATGTTACAGAAAATGCAGACATCGCCTGCCTTTACG CGTTTATGTTACAGAAAATGCAGACATTGCCTGCCTTTACG < 41bp 1 0.193548651767182 1 0.0793914496898651 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28574271 chr8:28574278 synonymous SNV . 0 28 hm5C_associated_SNPs_33217 0 0 1 0 0 Endoplasmic reticulum 1 0.500231645072174 1 0.999536709855653 hm5C_site_33125 DeepMRMD:1;iRNA_m5C:0.999536709855653 33126 chr6 149691193 149691193 1 + C T SKCM 149691182 + 149691162 149691202 41 TTCAGGTTTTACATGACCTGCGACAAAAATTCCCTGAAGTA TTCAGGTTTTACATGACCTGCGACAAAAATTTCCTGAAGTA < 41bp 1 0.541744504754776 1 0.209628015756607 experiment 0.916510990490448 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAB2 ENSG00000055208 CDS Human protein_coding chr6:149691182 chr6:149691193 synonymous SNV . 0 32 hm5C_associated_SNPs_33219 0 0 1 0 1 Cytosol 1 0.500231744533726 1 0.999536510932549 hm5C_site_33126 DeepMRMD:1;iRNA_m5C:0.999536510932549 33127 chr2 169551552 169551552 1 + C T SKCM 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATTAAAA < 41bp 1 0.454981205647993 1 0.286716520786285 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551552 synonymous SNV . 0 37 hm5C_associated_SNPs_33220 0 0 1 0 2 Endoplasmic reticulum 1 0.500231581983269 1 0.999536836033462 hm5C_site_33127 DeepMRMD:1;iRNA_m5C:0.999536836033462 33128 chr22 26242217 26242217 1 + G A SKCM 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGCGGTGAGGAGAAAAGCCCCGTGCTCCCAGATCAAGC < 41bp 1 0.292834399584128 1 0.168123781681061 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242217 synonymous SNV . 0 16 hm5C_associated_SNPs_33221 0 0 0 0 1 chromatin 1 0.500231644012587 1 0.999536711974826 hm5C_site_33128 DeepMRMD:1;iRNA_m5C:0.999536711974826 33129 chr20 61595008 61595008 1 + C T SKCM 61595023 + 61595003 61595043 41 TTCTTCGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGGGG TTCTTTGAGGAGACCTTCCCCGACGCCAAGGTGAGTCGGGG < 41bp 1 0.510681205978817 1 0.491861253976822 experiment 0.978637588042366 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61595023 chr20:61595008 synonymous SNV . 0 6 hm5C_associated_SNPs_33222 0 0 1 0 2 Ribosome 1 0.500231645477126 1 0.999536709045748 hm5C_site_33129 DeepMRMD:1;iRNA_m5C:0.999536709045748 33130 chr17 54912461 54912461 1 + C T SKCM 54912447 + 54912427 54912467 41 GGGCTCCGCGTGGACGAGGGCTGCCTCAGGAAGGCCGACAA GGGCTCCGCGTGGACGAGGGCTGCCTCAGGAAGGTCGACAA < 41bp 1 0.643099997768826 1 0.109099984169006 experiment 0.713800004462349 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54912447 chr17:54912461 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_33223 0 0 0 0 0 Ribosome 1 0.500231642136769 1 0.999536715726461 hm5C_site_33130 DeepMRMD:1;iRNA_m5C:0.999536715726461 33131 chr20 18142489 18142489 1 + C T SKCM 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CTATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG < 41bp 1 0.0964181882357834 1 0.0529814660549164 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142489 synonymous SNV . 0 2 hm5C_associated_SNPs_33224 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_33131 DeepMRMD:1;iRNA_m5C:0.999536712157816 33132 chr12 52635367 52635367 1 + G A SKCM 52635378 + 52635358 52635398 41 GCGCAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC GCGCAGTATAAGGAGATGGCCAAATGCAGCCGGGCTGAGGC < 41bp 1 0.317522826035546 1 0.352155148983002 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52635378 chr12:52635367 nonsynonymous SNV 0.940 4 10 hm5C_associated_SNPs_33225 0 0 1 0 1 Cytosol 1 0.500231643921151 1 0.999536712157699 hm5C_site_33132 DeepMRMD:1;iRNA_m5C:0.999536712157699 33133 chr8 25168015 25168015 1 + C T SKCM 25168004 + 25167984 25168024 41 ACACTTGGTTGATAGATCAACAGCAATAGCCCGGAAGATGG ACACTTGGTTGATAGATCAACAGCAATAGCCTGGAAGATGG < 41bp 1 0.60457223341755 1 0.274480700492859 experiment 0.7908555331649 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25168004 chr8:25168015 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_33227 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33133 DeepMRMD:1;iRNA_m5C:0.999536712157815 33134 chr15 63128194 63128194 1 + C T SKCM 63128184 + 63128164 63128204 41 GGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCTTCCA GGAGAAGCTCATCTCATCTGCCAAGCAGGTTGCCGCTTCCA < 41bp 1 0.0509740962188827 1 0.223746657371521 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63128184 chr15:63128194 synonymous SNV . 0 31 hm5C_associated_SNPs_33228 0 0 0 0 1 Nucleus 1 0.500231668980469 1 0.999536662039062 hm5C_site_33134 DeepMRMD:1;iRNA_m5C:0.999536662039062 33135 chr3 41275119 41275119 1 + T G SKCM 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTGGCAAT < 41bp 1 0.117472513486433 1 0.189842700958252 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275119 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_33229 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33135 DeepMRMD:1;iRNA_m5C:0.999536712157815 33136 chr4 57881716 57881716 1 + G A SKCM 57881714 + 57881694 57881734 41 GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTA GAGGGAGATTCGGATCTATACGAATGCAGGCCGTATTTGTA < 41bp 1 0.470685661519925 1 0.260179489850998 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57881714 chr4:57881716 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_33230 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_33136 DeepMRMD:1;iRNA_m5C:0.999536712157812 33137 chr11 58892632 58892632 1 + C T SKCM 58892617 + 58892597 58892637 41 CCCAGGATTAGAAATTATTACTTTTGTAGTTTGCCCCGAAA CCCAGGATTAGAAATTATTACTTTTGTAGTTTGCCTCGAAA < 41bp 1 0.137093409664777 1 0.0529019832611084 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM111B ENSG00000189057 CDS Human protein_coding chr11:58892617 chr11:58892632 synonymous SNV . 0 36 hm5C_associated_SNPs_33231 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_33137 DeepMRMD:1;iRNA_m5C:0.999536712157816 33138 chr22 41735889 41735889 1 + C T SKCM 41735900 + 41735880 41735920 41 CCCGTGTTCCCCGGCGGGACCCCACTGCTACCACCTGTGGT CCCGTGTTCTCCGGCGGGACCCCACTGCTACCACCTGTGGT < 41bp 1 0.0722556240152919 1 0.0698600113391876 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735900 chr22:41735889 nonsynonymous SNV 0.955 1 10 hm5C_associated_SNPs_33232 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921098 1 0.999536712157803 hm5C_site_33138 DeepMRMD:1;iRNA_m5C:0.999536712157803 33139 chr22 32217490 32217490 1 + C T SKCM 32217507 + 32217487 32217527 41 GGGCCATCCGGAGAAGCCATCCAGATCCACCACCAGACCCG GGGTCATCCGGAGAAGCCATCCAGATCCACCACCAGACCCG < 41bp 1 0.561464753183426 1 0.220364689826965 experiment 0.877070493633148 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32217507 chr22:32217490 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_33233 0 0 1 0 1 chromatin 1 0.500231477485561 1 0.999537045028877 hm5C_site_33139 DeepMRMD:1;iRNA_m5C:0.999537045028877 33140 chr19 46003763 46003763 1 + G A SKCM 46003772 + 46003752 46003792 41 ACAGTTTTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT ACAGTTTTCAGAACTCTGGCCTCAGAGGACATCCCAGATTT < 41bp 1 0.445148350373339 1 0.324308097362518 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003772 chr19:46003763 synonymous SNV . 0 12 hm5C_associated_SNPs_33234 0 0 0 0 2 nucleolus 1 0.500231644098766 1 0.999536711802467 hm5C_site_33140 DeepMRMD:1;iRNA_m5C:0.999536711802467 33141 chr14 104642925 104642925 1 + C T SKCM 104642905 + 104642885 104642925 41 GCAGCTTCTGCTGGCAGGGCCCCCAGCCCCACACTTGGCTC GCAGCTTCTGCTGGCAGGGCCCCCAGCCCCACACTTGGCTT < 41bp 1 0.218836788418386 1 0.487184047698975 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642905 chr14:104642925 nonsynonymous SNV 0.001 1 41 hm5C_associated_SNPs_33235 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_33141 DeepMRMD:1;iRNA_m5C:0.999536712157814 33142 chr14 104642925 104642925 1 + C T SKCM 104642936 + 104642916 104642956 41 CACTTGGCTCCCCCCGGCTGCCTGAGGCCCAGGTGATGCTA CACTTGGCTTCCCCCGGCTGCCTGAGGCCCAGGTGATGCTA < 41bp 1 0.218190757084923 1 0.256276071071625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642936 chr14:104642925 nonsynonymous SNV 0.001 1 10 hm5C_associated_SNPs_33236 0 0 0 0 0 Ribosome 1 0.500231643864672 1 0.999536712270656 hm5C_site_33142 DeepMRMD:1;iRNA_m5C:0.999536712270656 33143 chr14 104642925 104642925 1 + C T SKCM 104642945 + 104642925 104642965 41 CCCCCCGGCTGCCTGAGGCCCAGGTGATGCTAGCCTGTGCC TCCCCCGGCTGCCTGAGGCCCAGGTGATGCTAGCCTGTGCC < 41bp 1 0.542193296948885 1 0.826720595359802 experiment 0.91561340610223 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642945 chr14:104642925 nonsynonymous SNV 0.001 1 1 hm5C_associated_SNPs_33237 0 0 0 0 0 Ribosome 1 0.500231643921123 0.346558809280396 0.999536712157754 hm5C_site_33143 DeepMRMD:0.346558809280396;iRNA_m5C:0.999536712157754 33144 chr2 85133146 85133146 1 + C T SKCM 85133155 + 85133135 85133175 41 TAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCCA TAAGAAAATGGTAGACAAACCAGACATGGGGGAAATCGCCA < 41bp 1 0.407038983999874 1 0.134329617023468 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMSB10 ENSG00000034510 CDS Human protein_coding chr2:85133155 chr2:85133146 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_33239 0 0 1 0 1 Ribosome 1 0.500231643949826 1 0.999536712100348 hm5C_site_33144 DeepMRMD:1;iRNA_m5C:0.999536712100348 33145 chr1 153617557 153617557 1 + C T SKCM 153617537 + 153617517 153617557 41 TTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGTC TTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGTT < 41bp 1 0.142685093013872 1 0.341169834136963 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617537 chr1:153617557 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_33241 0 0 1 0 1 Cytosol 1 0.500231650811759 1 0.999536698376483 hm5C_site_33145 DeepMRMD:1;iRNA_m5C:0.999536698376483 33146 chrX 47102868 47102868 1 + G T SKCM 47102871 + 47102851 47102891 41 TTCCTGTCTACCTGCGGGAGCGCACCCCTGCCCGTGACTAC TTCCTGTCTACCTGCGGTAGCGCACCCCTGCCCGTGACTAC < 41bp 1 0.203257698330073 1 0.153014361858368 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47102871 chrX:47102868 stopgain 1.000 0 18 hm5C_associated_SNPs_33242 0 0 1 0 1 cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_33146 DeepMRMD:1;iRNA_m5C:0.999536712157812 33147 chr4 77631396 77631396 1 + G A SKCM 77631393 + 77631373 77631413 41 CTCACCTCTGGCCCCCAGCACAGGAAAGCAGCGTGGTCAGG CTCACCTCTGGCCCCCAGCACAGAAAAGCAGCGTGGTCAGG < 41bp 1 0.360124005076787 1 0.134538531303406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77631393 chr4:77631396 synonymous SNV . 0 24 hm5C_associated_SNPs_33243 0 0 0 0 2 Ribosome 1 0.500231643921097 1 0.999536712157805 hm5C_site_33147 DeepMRMD:1;iRNA_m5C:0.999536712157805 33148 chr7 142458528 142458528 1 + G A SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTCATCAACAAACAGTG < 41bp 1 0.245224638519055 1 0.113527983427048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458528 nonsynonymous SNV 0.002 1 34 hm5C_associated_SNPs_33244 0 0 0 0 2 Cytosol 1 0.500231640307048 1 0.999536719385905 hm5C_site_33148 DeepMRMD:1;iRNA_m5C:0.999536719385905 33149 chr7 142458528 142458528 1 + G A SKCM 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCATCAACAAACAGTGGG < 41bp 1 0.0811865231442837 1 0.0607477724552155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458528 nonsynonymous SNV 0.002 1 32 hm5C_associated_SNPs_33245 0 0 0 0 2 Cytosol 1 0.50023163059098 1 0.99953673881804 hm5C_site_33149 DeepMRMD:1;iRNA_m5C:0.99953673881804 33150 chr7 142458528 142458528 1 + G A SKCM 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCATCAACAAACAGTGGGT < 41bp 1 0.166289025594243 1 0.0643559396266937 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458528 nonsynonymous SNV 0.002 1 31 hm5C_associated_SNPs_33246 0 0 0 0 2 Cytosol 1 0.500231491421588 1 0.999537017156824 hm5C_site_33150 DeepMRMD:1;iRNA_m5C:0.999537017156824 33151 chr7 142458528 142458528 1 + G A SKCM 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCATCAACAAACAGTGGGTG < 41bp 1 0.376981840668052 1 0.115612298250198 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458528 nonsynonymous SNV 0.002 1 30 hm5C_associated_SNPs_33247 0 0 0 0 2 Cytosol 1 0.500231643139997 1 0.999536713720006 hm5C_site_33151 DeepMRMD:1;iRNA_m5C:0.999536713720006 33152 chr7 142458528 142458528 1 + G A SKCM 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCATCAACAAACAGTGGGTGGT < 41bp 1 0.451063526451184 1 0.686791062355042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458528 nonsynonymous SNV 0.002 1 28 hm5C_associated_SNPs_33248 0 0 0 0 2 Cytosol 1 0.500231643837122 0.626417875289916 0.999536712325756 hm5C_site_33152 DeepMRMD:0.626417875289916;iRNA_m5C:0.999536712325756 33153 chr7 142458528 142458528 1 + G A SKCM 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAACAAACAGTGGGTGGTATCAGC < 41bp 1 0.360049990197445 1 0.326247572898865 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458528 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_33250 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_33153 DeepMRMD:1;iRNA_m5C:0.999536712157817 33154 chr7 142458528 142458528 1 + G A SKCM 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAACAAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.58533108667013 1 0.534774839878082 experiment 0.82933782665974 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458528 nonsynonymous SNV 0.002 1 18 hm5C_associated_SNPs_33251 0 0 0 0 2 Cytosol 1 0.500231643921206 0.930450320243836 0.999536712157588 hm5C_site_33154 DeepMRMD:0.930450320243836;iRNA_m5C:0.999536712157588 33155 chr7 142458528 142458528 1 + G A SKCM 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CAAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.531891680993677 1 0.877896964550018 experiment 0.936216638012645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458528 nonsynonymous SNV 0.002 1 2 hm5C_associated_SNPs_33252 0 0 0 0 2 Cytosol 1 0.500231644141924 0.244206070899964 0.999536711716151 hm5C_site_33155 DeepMRMD:0.244206070899964;iRNA_m5C:0.999536711716151 33156 chr19 50189399 50189399 1 + C G SKCM 50189383 + 50189363 50189403 41 ATACCGTCAAGGTGGAAGACCTGACCTTCACCTCCCCGTTC ATACCGTCAAGGTGGAAGACCTGACCTTCACCTCCCGGTTC < 41bp 1 0.40048150670927 1 0.0484292805194855 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50189383 chr19:50189399 nonsynonymous SNV 0.971 2 37 hm5C_associated_SNPs_33253 0 0 1 0 1 Cytosol 1 0.500229055496436 1 0.999541889007129 hm5C_site_33156 DeepMRMD:1;iRNA_m5C:0.999541889007129 33157 chrX 128691357 128691357 1 + C T SKCM 128691345 + 128691325 128691365 41 GGGGACTGGATCAGAGAGCGCCGCTTTGAAATCCCTGATGA GGGGACTGGATCAGAGAGCGCCGCTTTGAAATTCCTGATGA < 41bp 1 0.36014722804044 1 0.0596442222595215 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128691345 chrX:128691357 synonymous SNV . 0 33 hm5C_associated_SNPs_33254 0 0 1 0 2 Cytosol 1 0.500231643921181 1 0.999536712157637 hm5C_site_33157 DeepMRMD:1;iRNA_m5C:0.999536712157637 33158 chr11 67353993 67353993 1 + T C SKCM 67353999 + 67353979 67354019 41 CAAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACC CAAGCTCAAGGCCTCCCTGGCCTCCCCTGAGTACGTGAACC < 41bp 1 0.0171678935204489 1 0.205099016427994 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67353999 chr11:67353993 nonsynonymous SNV 0.979 2 15 hm5C_associated_SNPs_33255 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33158 DeepMRMD:1;iRNA_m5C:0.999536712157815 33159 chr11 67353993 67353993 1 + T C SKCM 67354000 + 67353980 67354020 41 AAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACCT AAGCTCAAGGCCTCCCTGGCCTCCCCTGAGTACGTGAACCT < 41bp 1 0.240845209057459 1 0.213044613599777 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67354000 chr11:67353993 nonsynonymous SNV 0.979 2 14 hm5C_associated_SNPs_33256 0 0 1 0 0 Cytosol 1 0.500231572157753 1 0.999536855684495 hm5C_site_33159 DeepMRMD:1;iRNA_m5C:0.999536855684495 33160 chr3 11301470 11301470 1 + G A SKCM 11301466 + 11301446 11301486 41 AGAGAACCCCAAGGGGGATGCCAAGAAACCAGGGAAGGAGT AGAGAACCCCAAGGGGGATGCCAAAAAACCAGGGAAGGAGT < 41bp 1 0.329136209958026 1 0.550424695014954 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HRH1 ENSG00000196639 CDS Human protein_coding chr3:11301466 chr3:11301470 synonymous SNV . 0 25 hm5C_associated_SNPs_33257 0 0 0 0 0 nucleus 1 0.500231643921092 0.899150609970092 0.999536712157815 hm5C_site_33160 DeepMRMD:0.899150609970092;iRNA_m5C:0.999536712157815 33161 chr5 74638497 74638497 1 + G T SKCM 74638509 + 74638489 74638529 41 TCATAGTGGGGACAGTGACACTGACCATCTGCATGATGTCC TCATAGTGTGGACAGTGACACTGACCATCTGCATGATGTCC < 41bp 1 0.300331731032033 1 0.0707316994667053 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMGCR ENSG00000113161 CDS Human protein_coding chr5:74638509 chr5:74638497 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_33258 0 0 1 0 2 Nucleus 1 0.500232231629379 1 0.999535536741243 hm5C_site_33161 DeepMRMD:1;iRNA_m5C:0.999535536741243 33162 chr8 144801635 144801635 1 + C T SKCM 144801634 + 144801614 144801654 41 AGCTGATCCTGGAGACCATCCCACCGCCATCTGAGGAGGGT AGCTGATCCTGGAGACCATCCTACCGCCATCTGAGGAGGGT < 41bp 1 0.206595597923658 1 0.24239706993103 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144801634 chr8:144801635 nonsynonymous SNV 0.143 1 22 hm5C_associated_SNPs_33259 0 0 1 0 0 chromatin 1 0.500231643915469 1 0.999536712169061 hm5C_site_33162 DeepMRMD:1;iRNA_m5C:0.999536712169061 33163 chr2 97007508 97007508 1 + C T SKCM 97007527 + 97007507 97007547 41 CCCAGTCCTCGAAGACTTTCCTCAGAATGACGATGAGAAGG CTCAGTCCTCGAAGACTTTCCTCAGAATGACGATGAGAAGG < 41bp 1 0.569946080180448 1 0.321202039718628 experiment 0.860107839639105 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPH ENSG00000121152 CDS Human protein_coding chr2:97007527 chr2:97007508 nonsynonymous SNV 0.966 1 2 hm5C_associated_SNPs_33260 0 0 1 0 2 Cytosol 1 0.500231647032235 1 0.99953670593553 hm5C_site_33163 DeepMRMD:1;iRNA_m5C:0.99953670593553 33164 chr1 200869294 200869294 1 + T A SKCM 200869306 + 200869286 200869326 41 CCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAAACTGGA CCCAAGGTACGCCGCAGGATCGGAGCGGCTTACAAACTGGA < 41bp 1 0.603021042329858 1 0.432577192783356 experiment 0.793957915340285 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869306 chr1:200869294 synonymous SNV . 0 9 hm5C_associated_SNPs_33261 0 0 1 0 2 cytosol 1 0.500231654717514 1 0.999536690564972 hm5C_site_33164 DeepMRMD:1;iRNA_m5C:0.999536690564972 33165 chr9 18504864 18504864 1 + G A SKCM 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGGACGACCTATGGGATGCCTGGGG < 41bp 1 0.216168236582405 1 0.322930186986923 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504864 nonsynonymous SNV 0.976 0 23 hm5C_associated_SNPs_33263 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33165 DeepMRMD:1;iRNA_m5C:0.999536712157815 33166 chr15 52188700 52188700 1 + C T SKCM 52188695 + 52188675 52188715 41 GAAATGTTTCAGTCTTGCAGCCACCCGGAGCAATGACCCTG GAAATGTTTCAGTCTTGCAGCCACCTGGAGCAATGACCCTG < 41bp 1 0.127895942759366 1 0.0625995099544525 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMOD3 ENSG00000138594 CDS Human protein_coding chr15:52188695 chr15:52188700 nonsynonymous SNV 0.995 5 26 hm5C_associated_SNPs_33264 0 0 1 0 2 Cytosol 1 0.500231643917554 1 0.999536712164893 hm5C_site_33166 DeepMRMD:1;iRNA_m5C:0.999536712164893 33167 chr5 66462575 66462575 1 + C T SKCM 66462585 + 66462565 66462605 41 TCCCTGCCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTC TCCCTGCCCTTCTTCCGGGTCTCCACCCTGCCTCTGGAGTC < 41bp 1 0.389557340877095 1 0.599505007266998 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462585 chr5:66462575 nonsynonymous SNV 0.202 1 11 hm5C_associated_SNPs_33265 0 0 1 0 0 Cytosol 1 0.500231638687104 0.800989985466004 0.999536722625791 hm5C_site_33167 DeepMRMD:0.800989985466004;iRNA_m5C:0.999536722625791 33168 chr5 66462575 66462575 1 + C T SKCM 66462587 + 66462567 66462607 41 CCTGCCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCAC CCTGCCCTTCTTCCGGGTCTCCACCCTGCCTCTGGAGTCAC < 41bp 1 0.0636643932504885 1 0.0423896908760071 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462587 chr5:66462575 nonsynonymous SNV 0.202 1 9 hm5C_associated_SNPs_33266 0 0 1 0 0 Cytosol 1 0.500231643893139 1 0.999536712213722 hm5C_site_33168 DeepMRMD:1;iRNA_m5C:0.999536712213722 33169 chr5 66462575 66462575 1 + C T SKCM 66462588 + 66462568 66462608 41 CTGCCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACA CTGCCCTTCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACA < 41bp 1 0.115044689352652 1 0.0206922292709351 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462588 chr5:66462575 nonsynonymous SNV 0.202 1 8 hm5C_associated_SNPs_33267 0 0 1 0 0 Cytosol 1 0.500231643388736 1 0.999536713222527 hm5C_site_33169 DeepMRMD:1;iRNA_m5C:0.999536713222527 33170 chr5 66462575 66462575 1 + C T SKCM 66462590 + 66462570 66462610 41 GCCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACC GCCCTTCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACC < 41bp 1 0.0720678382057077 1 0.0891749858856201 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462590 chr5:66462575 nonsynonymous SNV 0.202 1 6 hm5C_associated_SNPs_33268 0 0 1 0 0 Cytosol 1 0.500231643921032 1 0.999536712157935 hm5C_site_33170 DeepMRMD:1;iRNA_m5C:0.999536712157935 33171 chr5 66462575 66462575 1 + C T SKCM 66462591 + 66462571 66462611 41 CCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCA CCCTTCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCA < 41bp 1 0.04939301800536 1 0.417155623435974 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462591 chr5:66462575 nonsynonymous SNV 0.202 1 5 hm5C_associated_SNPs_33269 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_33171 DeepMRMD:1;iRNA_m5C:0.999536712157815 33172 chr5 66462575 66462575 1 + C T SKCM 66462592 + 66462572 66462612 41 CCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCAC CCTTCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCAC < 41bp 1 0.260414750998689 1 0.262357115745544 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462592 chr5:66462575 nonsynonymous SNV 0.202 1 4 hm5C_associated_SNPs_33270 0 0 1 0 0 Cytosol 1 0.500231643904466 1 0.999536712191069 hm5C_site_33172 DeepMRMD:1;iRNA_m5C:0.999536712191069 33173 chr5 66462575 66462575 1 + C T SKCM 66462595 + 66462575 66462615 41 CCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCACCCC TCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCACCCC < 41bp 1 0.0502069234884143 1 0.0720075368881226 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462595 chr5:66462575 nonsynonymous SNV 0.202 1 1 hm5C_associated_SNPs_33271 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33173 DeepMRMD:1;iRNA_m5C:0.999536712157815 33174 chr7 142458565 142458565 1 + C T SKCM 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTTGT < 41bp 1 0.538304367621549 1 0.862168610095978 experiment 0.923391264756901 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458565 nonsynonymous SNV 0.553 2 39 hm5C_associated_SNPs_33272 0 0 0 0 2 Cytosol 1 0.500231644141503 0.275662779808044 0.999536711716995 hm5C_site_33174 DeepMRMD:0.275662779808044;iRNA_m5C:0.999536711716995 33175 chr7 142458565 142458565 1 + C T SKCM 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTTGTAAGT < 41bp 1 0.192948940852907 1 0.385544717311859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458565 nonsynonymous SNV 0.553 2 35 hm5C_associated_SNPs_33273 0 0 0 0 2 Cytosol 1 0.500231643920659 1 0.999536712158682 hm5C_site_33175 DeepMRMD:1;iRNA_m5C:0.999536712158682 33176 chr7 142458565 142458565 1 + C T SKCM 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTTGTAAGTG < 41bp 1 0.440596684622257 1 0.157918125391006 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458565 nonsynonymous SNV 0.553 2 34 hm5C_associated_SNPs_33274 0 0 0 0 2 Cytosol 1 0.50022999596372 1 0.999540008072561 hm5C_site_33176 DeepMRMD:1;iRNA_m5C:0.999540008072561 33177 chr7 142458565 142458565 1 + C T SKCM 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG TGGGTGGTATCAGCAGGCCACTGCTACAAGTTGTAAGTGTG < 41bp 1 0.310061834179177 1 0.114913284778595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458565 nonsynonymous SNV 0.553 2 32 hm5C_associated_SNPs_33275 0 0 0 0 2 Cytosol 1 0.500438737419888 1 0.999122525160225 hm5C_site_33177 DeepMRMD:1;iRNA_m5C:0.999122525160225 33178 chr7 142458565 142458565 1 + C T SKCM 142458557 + 142458537 142458577 41 GTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGG GTGGTATCAGCAGGCCACTGCTACAAGTTGTAAGTGTGGGG < 41bp 1 0.527503421683749 1 0.763113379478455 experiment 0.944993156632502 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458557 chr7:142458565 nonsynonymous SNV 0.553 2 29 hm5C_associated_SNPs_33276 0 0 0 0 2 Cytosol 1 0.500231643921092 0.47377324104309 0.999536712157815 hm5C_site_33178 DeepMRMD:0.47377324104309;iRNA_m5C:0.999536712157815 33179 chr7 142458565 142458565 1 + C T SKCM 142458560 + 142458540 142458580 41 GTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCC GTATCAGCAGGCCACTGCTACAAGTTGTAAGTGTGGGGCCC < 41bp 1 0.628055860167814 1 0.542049527168274 experiment 0.743888279664372 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458560 chr7:142458565 nonsynonymous SNV 0.553 2 26 hm5C_associated_SNPs_33277 0 0 0 0 2 Cytosol 1 0.500231649185721 0.915900945663452 0.999536701628558 hm5C_site_33179 DeepMRMD:0.915900945663452;iRNA_m5C:0.999536701628558 33180 chr19 3739121 3739121 1 + C T SKCM 3739101 + 3739081 3739121 41 TGGGTCGTGACCTGCGGGAGCAAGAGCGGGGCATCATTCCC TGGGTCGTGACCTGCGGGAGCAAGAGCGGGGCATCATTCCT < 41bp 1 0.696628644639008 1 0.704635679721832 experiment 0.606742710721984 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TJP3 ENSG00000105289 CDS Human protein_coding chr19:3739101 chr19:3739121 synonymous SNV . 0 41 hm5C_associated_SNPs_33278 0 0 0 0 1 Ribosome 1 0.500231631077122 0.590728640556336 0.999536737845755 hm5C_site_33180 DeepMRMD:0.590728640556336;iRNA_m5C:0.999536737845755 33181 chr3 136665000 136665000 1 + T G SKCM 136664991 + 136664971 136665011 41 GTTTGGAACCATCACCTCCACAGTGTGATTACATTAGGCCT GTTTGGAACCATCACCTCCACAGTGTGATGACATTAGGCCT < 41bp 1 0.625721653446031 1 0.182479321956635 experiment 0.748556693107937 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCK1 ENSG00000158092 CDS Human protein_coding chr3:136664991 chr3:136665000 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_33280 0 0 1 0 0 Ribosome 1 0.500229985292325 1 0.99954002941535 hm5C_site_33181 DeepMRMD:1;iRNA_m5C:0.99954002941535 33182 chr2 74077595 74077595 1 + C T SKCM 74077580 + 74077560 74077600 41 GATTACTGCAACACAGAGAACGAAGAAGAACTTTTCCTCAT GATTACTGCAACACAGAGAACGAAGAAGAACTTTTTCTCAT < 41bp 1 0.57106174146094 1 0.428724765777588 experiment 0.85787651707812 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74077580 chr2:74077595 synonymous SNV . 0 36 hm5C_associated_SNPs_33281 0 0 1 0 2 Ribosome 1 0.500231643803841 1 0.999536712392318 hm5C_site_33182 DeepMRMD:1;iRNA_m5C:0.999536712392318 33183 chr5 66462576 66462576 1 + C T SKCM 66462585 + 66462565 66462605 41 TCCCTGCCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTC TCCCTGCCCTCTTTCCGGGTCTCCACCCTGCCTCTGGAGTC < 41bp 1 0.352139181230865 1 0.784774899482727 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462585 chr5:66462576 synonymous SNV . 0 12 hm5C_associated_SNPs_33282 0 0 1 0 0 Cytosol 1 0.500231643921092 0.430450201034546 0.999536712157815 hm5C_site_33183 DeepMRMD:0.430450201034546;iRNA_m5C:0.999536712157815 33184 chr5 66462576 66462576 1 + C T SKCM 66462587 + 66462567 66462607 41 CCTGCCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCAC CCTGCCCTCTTTCCGGGTCTCCACCCTGCCTCTGGAGTCAC < 41bp 1 0.0628863971053817 1 0.0267033278942108 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462587 chr5:66462576 synonymous SNV . 0 10 hm5C_associated_SNPs_33283 0 0 1 0 0 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_33184 DeepMRMD:1;iRNA_m5C:0.999536712157808 33185 chr5 66462576 66462576 1 + C T SKCM 66462588 + 66462568 66462608 41 CTGCCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACA CTGCCCTCTTTCCGGGTCTCCACCCTGCCTCTGGAGTCACA < 41bp 1 0.106494982863781 1 0.0145196616649628 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462588 chr5:66462576 synonymous SNV . 0 9 hm5C_associated_SNPs_33284 0 0 1 0 0 Cytosol 1 0.50023196815793 1 0.999536063684139 hm5C_site_33185 DeepMRMD:1;iRNA_m5C:0.999536063684139 33186 chr5 66462576 66462576 1 + C T SKCM 66462590 + 66462570 66462610 41 GCCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACC GCCCTCTTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACC < 41bp 1 0.0654427285201104 1 0.0469478070735931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462590 chr5:66462576 synonymous SNV . 0 7 hm5C_associated_SNPs_33285 0 0 1 0 0 Cytosol 1 0.500231480858656 1 0.999537038282689 hm5C_site_33186 DeepMRMD:1;iRNA_m5C:0.999537038282689 33187 chr5 66462576 66462576 1 + C T SKCM 66462591 + 66462571 66462611 41 CCCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCA CCCTCTTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCA < 41bp 1 0.0522743553677654 1 0.325887560844421 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462591 chr5:66462576 synonymous SNV . 0 6 hm5C_associated_SNPs_33286 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33187 DeepMRMD:1;iRNA_m5C:0.999536712157815 33188 chr5 66462576 66462576 1 + C T SKCM 66462592 + 66462572 66462612 41 CCTCCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCAC CCTCTTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCAC < 41bp 1 0.246609927842597 1 0.336994111537933 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462592 chr5:66462576 synonymous SNV . 0 5 hm5C_associated_SNPs_33287 0 0 1 0 0 Cytosol 1 0.500231470870646 1 0.999537058258709 hm5C_site_33188 DeepMRMD:1;iRNA_m5C:0.999537058258709 33189 chr5 66462576 66462576 1 + C T SKCM 66462595 + 66462575 66462615 41 CCTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCACCCC CTTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCACCCC < 41bp 1 0.0452505783531512 1 0.0705040395259857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462595 chr5:66462576 synonymous SNV . 0 2 hm5C_associated_SNPs_33288 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33189 DeepMRMD:1;iRNA_m5C:0.999536712157815 33190 chr5 66462576 66462576 1 + C T SKCM 66462596 + 66462576 66462616 41 CTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCACCCCG TTTCCGGGTCTCCACCCTGCCTCTGGAGTCACACCACCCCG < 41bp 1 0.3835048567212 1 0.253243803977966 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST4 ENSG00000069020 CDS Human protein_coding chr5:66462596 chr5:66462576 synonymous SNV . 0 1 hm5C_associated_SNPs_33289 0 0 1 0 0 Cytosol 1 0.50023164389452 1 0.999536712210961 hm5C_site_33190 DeepMRMD:1;iRNA_m5C:0.999536712210961 33191 chr6 157528033 157528033 1 + G T SKCM 157528014 + 157527994 157528034 41 ATCCAGCAAGCCAAAAGTCACCGGAACATCAAGCTGCTGGA ATCCAGCAAGCCAAAAGTCACCGGAACATCAAGCTGCTGTA < 41bp 1 0.324936319004222 1 0.129084169864655 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARID1B ENSG00000049618 CDS Human protein_coding chr6:157528014 chr6:157528033 stopgain 1.000 1 40 hm5C_associated_SNPs_33290 0 0 1 0 0 Ribosome 1 0.500231648861992 1 0.999536702276017 hm5C_site_33191 DeepMRMD:1;iRNA_m5C:0.999536702276017 33192 chr6 157528033 157528033 1 + G T SKCM 157528015 + 157527995 157528035 41 TCCAGCAAGCCAAAAGTCACCGGAACATCAAGCTGCTGGAG TCCAGCAAGCCAAAAGTCACCGGAACATCAAGCTGCTGTAG < 41bp 1 0.384048573206534 1 0.745666265487671 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARID1B ENSG00000049618 CDS Human protein_coding chr6:157528015 chr6:157528033 stopgain 1.000 1 39 hm5C_associated_SNPs_33291 0 0 1 0 0 Ribosome 1 0.500231643923879 0.508667469024658 0.999536712152242 hm5C_site_33192 DeepMRMD:0.508667469024658;iRNA_m5C:0.999536712152242 33193 chr2 233272986 233272986 1 + G A SKCM 233272995 + 233272975 233273015 41 AGGTGATCCTAGGTGGAGGCCGAAAGTACATGTTTCCCATG AGGTGATCCTAAGTGGAGGCCGAAAGTACATGTTTCCCATG < 41bp 1 0.586240653552681 1 0.415585070848465 experiment 0.827518692894639 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233272995 chr2:233272986 nonsynonymous SNV 0.139 5 12 hm5C_associated_SNPs_33292 0 0 0 0 1 exosome 1 0.500231649045552 1 0.999536701908896 hm5C_site_33193 DeepMRMD:1;iRNA_m5C:0.999536701908896 33194 chr7 99798497 99798497 1 + G A SKCM 99798514 + 99798494 99798534 41 CCCGAATTCACTTTCTTCAGCCGGGCGGACTTTGCCCGCAG CCCAAATTCACTTTCTTCAGCCGGGCGGACTTTGCCCGCAG < 41bp 1 0.592761282589736 1 0.695894837379456 experiment 0.814477434820528 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control STAG3 ENSG00000066923 CDS Human protein_coding chr7:99798514 chr7:99798497 nonsynonymous SNV 0.992 0 4 hm5C_associated_SNPs_33293 0 0 0 0 1 exosome 1 0.500231644543321 0.608210325241088 0.999536710913358 hm5C_site_33194 DeepMRMD:0.608210325241088;iRNA_m5C:0.999536710913358 33195 chr21 48068504 48068504 1 + C T SKCM 48068501 + 48068481 48068521 41 GGGACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCG GGGACTGGGATCATCAGTCTCTTTTGTGCACACTATGCGCG < 41bp 1 0.275606227655498 1 0.125889837741852 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068501 chr21:48068504 synonymous SNV 0.885 0 24 hm5C_associated_SNPs_33294 0 0 1 0 1 Cytosol 1 0.500231643998096 1 0.999536712003807 hm5C_site_33195 DeepMRMD:1;iRNA_m5C:0.999536712003807 33196 chrX 73046766 73046766 1 + C T SKCM 73046754 - 73046734 73046774 41 GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA GTTGGATGAAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA < 41bp 1 0.484726101838652 1 0.206427365541458 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046754 chrX:73046766 . . 0 9 hm5C_associated_SNPs_33295 0 0 1 0 0 unknown 1 0.500231643927022 1 0.999536712145955 hm5C_site_33196 DeepMRMD:1;iRNA_m5C:0.999536712145955 33197 chrX 73046766 73046766 1 + C T SKCM 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGAAAGTCTC < 41bp 1 0.332343540775482 1 0.482487618923187 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046766 . . 0 34 hm5C_associated_SNPs_33296 0 0 1 0 0 unknown 1 0.500231626029064 1 0.999536747941873 hm5C_site_33197 DeepMRMD:1;iRNA_m5C:0.999536747941873 33198 chrX 73046766 73046766 1 + C T SKCM 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGA < 41bp 1 0.315728585327864 1 0.157204419374466 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046766 . . 0 41 hm5C_associated_SNPs_33297 0 0 1 0 0 unknown 1 0.500231643921096 1 0.999536712157809 hm5C_site_33198 DeepMRMD:1;iRNA_m5C:0.999536712157809 33199 chr14 105936237 105936237 1 + C T SKCM 105936253 + 105936233 105936273 41 TGATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGG TGATTCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGG < 41bp 1 0.226916428995592 1 0.0803355574607849 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936253 chr14:105936237 synonymous SNV . 0 5 hm5C_associated_SNPs_33298 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33199 DeepMRMD:1;iRNA_m5C:0.999536712157815 33200 chr14 105936237 105936237 1 + C T SKCM 105936255 + 105936235 105936275 41 ATCCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGGAT ATTCGGGGGGGCTCCCTGCCCCCAGTCAAGCGGCGGCGGAT < 41bp 1 0.573007436828342 1 0.154611527919769 experiment 0.853985126343316 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936255 chr14:105936237 synonymous SNV . 0 3 hm5C_associated_SNPs_33299 0 0 1 0 2 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_33200 DeepMRMD:1;iRNA_m5C:0.999536712157808 33201 chr5 140516537 140516537 1 + G A SKCM 140516546 + 140516526 140516566 41 TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTC TCCATCAACGCAGACAACGGCCACCTGTTTGCCCTCAGGTC < 41bp 1 0.112035066061131 1 0.0837048292160034 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140516546 chr5:140516537 synonymous SNV . 0 12 hm5C_associated_SNPs_33300 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33201 DeepMRMD:1;iRNA_m5C:0.999536712157815 33202 chr3 31674562 31674562 1 + C T SKCM 31674578 + 31674558 31674598 41 AGCACCTGATAACAGGGAGACATTAGATCACAAACCTCGAG AGCATCTGATAACAGGGAGACATTAGATCACAAACCTCGAG < 41bp 1 0.213969462967728 1 0.254114985466003 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STT3B ENSG00000163527 CDS Human protein_coding chr3:31674578 chr3:31674562 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_33301 0 0 1 0 1 Nucleus 1 0.500231643920988 1 0.999536712158025 hm5C_site_33202 DeepMRMD:1;iRNA_m5C:0.999536712158025 33203 chr2 242683189 242683189 1 + C T SKCM 242683180 + 242683160 242683200 41 CAACCAACGCTGGAGGCCTGCGGTTTCTTCGATATGGCTCA CAACCAACGCTGGAGGCCTGCGGTTTCTTTGATATGGCTCA < 41bp 1 0.30321059354174 1 0.34381115436554 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242683180 chr2:242683189 stopgain 0.081 1 30 hm5C_associated_SNPs_33302 0 0 1 0 1 Ribosome 1 0.500231644020081 1 0.999536711959838 hm5C_site_33203 DeepMRMD:1;iRNA_m5C:0.999536711959838 33204 chr2 201499624 201499624 1 + C T SKCM 201499618 + 201499598 201499638 41 TGGATGTCTACGTGTCCACACAGTTTCCCAAATATATACAG TGGATGTCTACGTGTCCACACAGTTTTCCAAATATATACAG < 41bp 1 0.272656054057044 1 0.063347339630127 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201499618 chr2:201499624 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_33303 0 0 0 0 1 Endoplasmic reticulum 1 0.500231699282633 1 0.999536601434735 hm5C_site_33204 DeepMRMD:1;iRNA_m5C:0.999536601434735 33205 chr7 128494210 128494210 1 + G A SKCM 128494192 + 128494172 128494212 41 CCACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGG CCACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTAGG < 41bp 1 0.0400054721626803 1 0.05687016248703 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128494192 chr7:128494210 nonsynonymous SNV 0.996 3 39 hm5C_associated_SNPs_33304 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_33205 DeepMRMD:1;iRNA_m5C:0.999536712157814 33206 chr7 128494210 128494210 1 + G A SKCM 128494193 + 128494173 128494213 41 CACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGGG CACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTAGGG < 41bp 1 0.0145189349450238 1 0.147827535867691 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128494193 chr7:128494210 nonsynonymous SNV 0.996 3 38 hm5C_associated_SNPs_33305 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_33206 DeepMRMD:1;iRNA_m5C:0.999536712157815 33207 chr11 60704128 60704128 1 + C T SKCM 60704142 + 60704122 60704162 41 GGCCCTCCTGGGGGCACCACCAGCTCCTCAAGCACCCTGGC GGCCCTTCTGGGGGCACCACCAGCTCCTCAAGCACCCTGGC < 41bp 1 0.530338374423364 1 0.875518918037415 experiment 0.939323251153273 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60704142 chr11:60704128 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_33306 0 0 1 0 0 Ribosome 1 0.500231643921092 0.24896216392517 0.999536712157815 hm5C_site_33207 DeepMRMD:0.24896216392517;iRNA_m5C:0.999536712157815 33208 chr15 81199005 81199005 1 + G A SKCM 81199009 + 81198989 81199029 41 CCCTTTCTGCCCTAGGGAAACCAATGTACCTGCACATCGGG CCCTTTCTGCCCTAGGAAAACCAATGTACCTGCACATCGGG < 41bp 1 0.119144490480088 1 0.115868598222733 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81199009 chr15:81199005 synonymous SNV . 0 17 hm5C_associated_SNPs_33307 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33208 DeepMRMD:1;iRNA_m5C:0.999536712157815 33209 chr11 61490981 61490981 1 + G A SKCM 61490991 + 61490971 61491011 41 CCCACGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG CCCACGGGCCACACCTTTGTCAAGCTGAGAGCCACCAAGAG < 41bp 1 0.404919183172196 1 0.826247096061707 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490991 chr11:61490981 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_33308 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164393098 0.347505807876586 0.999536712138041 hm5C_site_33209 DeepMRMD:0.347505807876586;iRNA_m5C:0.999536712138041 33210 chrX 73046579 73046579 1 + C T SKCM 73046568 - 73046548 73046588 41 GACCCAAGCGAAAAAGGTATCTCAAGACTAACGGCCGGAAT GACCCAAGCAAAAAAGGTATCTCAAGACTAACGGCCGGAAT < 41bp 1 0.678380056313535 1 0.677143096923828 experiment 0.643239887372929 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046568 chrX:73046579 . . 0 10 hm5C_associated_SNPs_33309 0 0 1 1 0 unknown 1 0.50023164457382 0.645713806152344 0.999536710852361 hm5C_site_33210 DeepMRMD:0.645713806152344;iRNA_m5C:0.999536710852361 33211 chrX 73046579 73046579 1 + C T SKCM 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGATAGAGGACCCAAGCAAAAAAGGTATCTCA < 41bp 1 0.093930753273782 1 0.176983952522278 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046579 . . 0 27 hm5C_associated_SNPs_33310 0 0 1 1 0 unknown 1 0.500231643875424 1 0.999536712249153 hm5C_site_33211 DeepMRMD:1;iRNA_m5C:0.999536712249153 33212 chr7 73944162 73944162 1 + C T SKCM 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATCTCCTTCAAGCGCCCCTGCACTT < 41bp 1 0.0319898347301342 1 0.500946223735809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944162 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_33311 0 0 1 0 2 Nucleus 1 0.50023165861749 0.998107552528382 0.99953668276502 hm5C_site_33212 DeepMRMD:0.998107552528382;iRNA_m5C:0.99953668276502 33213 chr21 38558073 38558073 1 + C T SKCM 38558059 + 38558039 38558079 41 AACATGAATTACATCTGGATCAGTCCCTTGAAATCAGGCAA AACATGAATTACATCTGGATCAGTCCCTTGAAATTAGGCAA < 41bp 1 0.0520533093996036 1 0.130006909370422 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC3 ENSG00000182670 CDS Human protein_coding chr21:38558059 chr21:38558073 synonymous SNV . 0 35 hm5C_associated_SNPs_33312 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33213 DeepMRMD:1;iRNA_m5C:0.999536712157815 33214 chr9 124062268 124062268 1 + G A SKCM 124062255 + 124062235 124062275 41 GGGGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCG GGGGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGAGTGCCCG < 41bp 1 0.447971680653437 1 0.597301244735718 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062255 chr9:124062268 synonymous SNV . 0 34 hm5C_associated_SNPs_33313 0 0 1 0 1 Cytosol 1 0.500231643921323 0.805397510528564 0.999536712157355 hm5C_site_33214 DeepMRMD:0.805397510528564;iRNA_m5C:0.999536712157355 33215 chr9 124062268 124062268 1 + G A SKCM 124062257 + 124062237 124062277 41 GGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAG GGGCGTCCCAGGCGGGGGCGCCCCAGGGGCGAGTGCCCGAG < 41bp 1 0.67634583294581 1 0.560533761978149 experiment 0.64730833410838 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062257 chr9:124062268 synonymous SNV . 0 32 hm5C_associated_SNPs_33314 0 0 1 0 1 Cytosol 1 0.500231643921092 0.878932476043702 0.999536712157815 hm5C_site_33215 DeepMRMD:0.878932476043702;iRNA_m5C:0.999536712157815 33216 chr9 124062268 124062268 1 + G A SKCM 124062258 + 124062238 124062278 41 GGCGTCCCAGGCGGGGGCGCCCCAGGGGCGGGTGCCCGAGG GGCGTCCCAGGCGGGGGCGCCCCAGGGGCGAGTGCCCGAGG < 41bp 1 0.532389600312536 1 0.828202843666077 experiment 0.935220799374927 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSN ENSG00000148180 CDS Human protein_coding chr9:124062258 chr9:124062268 synonymous SNV . 0 31 hm5C_associated_SNPs_33315 0 0 1 0 1 Cytosol 1 0.500231719006693 0.343594312667846 0.999536561986614 hm5C_site_33216 DeepMRMD:0.343594312667846;iRNA_m5C:0.999536561986614 33217 chr19 19627027 19627027 1 + G A SKCM 19627040 + 19627020 19627060 41 GGGACCGGAAGTGTGGGATACTGCGAGTATGGCGGCGTCAA GGGACCGAAAGTGTGGGATACTGCGAGTATGGCGGCGTCAA < 41bp 1 0.62868809002817 1 0.232524812221527 experiment 0.742623819943659 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19627040 chr19:19627027 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_33316 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920309 1 0.999536712159383 hm5C_site_33217 DeepMRMD:1;iRNA_m5C:0.999536712159383 33218 chr21 42769547 42769547 1 + C T SKCM 42769560 + 42769540 42769580 41 AGTTCTCCTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG AGTTCTCTTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG < 41bp 1 0.311030957638168 1 0.599059820175171 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MX2 ENSG00000183486 CDS Human protein_coding chr21:42769560 chr21:42769547 synonymous SNV . 0 8 hm5C_associated_SNPs_33318 0 0 0 2 1 exosome 1 0.500231643374191 0.801880359649658 0.999536713251618 hm5C_site_33218 DeepMRMD:0.801880359649658;iRNA_m5C:0.999536713251618 33219 chr1 109342872 109342872 1 + G A SKCM 109342888 + 109342868 109342908 41 AAAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA AAAAAAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGA < 41bp 1 0.465367885674516 1 0.0224480628967285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342888 chr1:109342872 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_33319 0 0 0 0 2 Nucleus 1 0.500231643921084 1 0.999536712157831 hm5C_site_33219 DeepMRMD:1;iRNA_m5C:0.999536712157831 33220 chr1 109342872 109342872 1 + G A SKCM 109342889 + 109342869 109342909 41 AAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA AAAAAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAA < 41bp 1 0.37578594231928 1 0.0412998497486115 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109342889 chr1:109342872 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_33320 0 0 0 0 2 Nucleus 1 0.500231643579373 1 0.999536712841254 hm5C_site_33220 DeepMRMD:1;iRNA_m5C:0.999536712841254 33221 chr10 81109500 81109500 1 + C T SKCM 81109491 + 81109471 81109511 41 TCCACCTTCCACAGGGTGATCCCTTCCTTCATGTGCCAGGT TCCACCTTCCACAGGGTGATCCCTTCCTTTATGTGCCAGGT < 41bp 1 0.0744746422921442 1 0.177996039390564 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PPIF ENSG00000108179 CDS Human protein_coding chr10:81109491 chr10:81109500 synonymous SNV . 0 30 hm5C_associated_SNPs_33321 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33221 DeepMRMD:1;iRNA_m5C:0.999536712157815 33222 chr11 118267090 118267090 1 + G A SKCM 118267077 + 118267057 118267097 41 CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA CCCCTCACCATGGACCAGATCCGGCCAAACACAAAACTAAA < 41bp 1 0.202728092497217 1 0.282431244850159 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118267077 chr11:118267090 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_33322 0 0 1 0 1 Nucleus 1 0.500231727378436 1 0.999536545243127 hm5C_site_33222 DeepMRMD:1;iRNA_m5C:0.999536545243127 33223 chr19 48220214 48220214 1 + C T SKCM 48220221 + 48220201 48220241 41 GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCCGCAAA GCAACGCCCTCGTTGTGGACCCGGACAAGCCCTTCCGCAAA < 41bp 1 0.548539598779449 1 0.3398617208004 experiment 0.902920802441101 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EHD2 ENSG00000024422 CDS Human protein_coding chr19:48220221 chr19:48220214 synonymous SNV . 0 14 hm5C_associated_SNPs_33323 0 0 1 0 1 Nucleus 1 0.500231643656739 1 0.999536712686522 hm5C_site_33223 DeepMRMD:1;iRNA_m5C:0.999536712686522 33224 chr11 65267924 65267924 1 + C T SKCM 65267931 + 65267911 65267951 41 AGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGG AGCAGACAGGATTTCAGGAACCAGTGTTTGATGAAGCTAGG < 41bp 1 0.348393834458189 1 0.3803830742836 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267931 chr11:65267924 . . 0 14 hm5C_associated_SNPs_33324 0 0 1 2 0 unknown 1 0.500231643634468 1 0.999536712731064 hm5C_site_33224 DeepMRMD:1;iRNA_m5C:0.999536712731064 33225 chr11 65267924 65267924 1 + C T SKCM 65267932 + 65267912 65267952 41 GCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGGA GCAGACAGGATTTCAGGAACCAGTGTTTGATGAAGCTAGGA < 41bp 1 0.666654639767472 1 0.338794708251953 experiment 0.666690720465057 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267932 chr11:65267924 . . 0 13 hm5C_associated_SNPs_33325 0 0 1 2 0 unknown 1 0.500231600848365 1 0.99953679830327 hm5C_site_33225 DeepMRMD:1;iRNA_m5C:0.99953679830327 33226 chr1 110596512 110596512 1 + C T SKCM 110596500 + 110596480 110596520 41 GTTAGAAAGGGAGGTCTTCTCCAAGCCCATTTCCTGGGAAG GTTAGAAAGGGAGGTCTTCTCCAAGCCCATTTTCTGGGAAG < 41bp 1 0.624811156371228 1 0.558976650238037 experiment 0.750377687257545 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110596500 chr1:110596512 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_33326 0 0 1 0 0 Cytosol 1 0.500231643921092 0.882046699523926 0.999536712157815 hm5C_site_33226 DeepMRMD:0.882046699523926;iRNA_m5C:0.999536712157815 33227 chr20 42695393 42695393 1 + C T SKCM 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTTCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA < 41bp 1 0.464968751437668 1 0.159744024276733 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695393 nonsynonymous SNV 0.947 0 3 hm5C_associated_SNPs_33327 0 0 0 0 1 exosome 1 0.500231566258998 1 0.999536867482003 hm5C_site_33227 DeepMRMD:1;iRNA_m5C:0.999536867482003 33228 chr4 30725910 30725910 1 + G A SKCM 30725920 + 30725900 30725940 41 CACTGTGGAGGCTTCTAAGCCAAATGGACAGAGGTATGATA CACTGTGGAGACTTCTAAGCCAAATGGACAGAGGTATGATA < 41bp 1 0.115990937499284 1 0.698840439319611 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCDH7 ENSG00000169851 CDS Human protein_coding chr4:30725920 chr4:30725910 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_33328 0 0 1 0 0 Ribosome 1 0.500231643968788 0.602319121360778 0.999536712062424 hm5C_site_33228 DeepMRMD:0.602319121360778;iRNA_m5C:0.999536712062424 33229 chr4 3432488 3432488 1 + C T SKCM 3432506 + 3432486 3432526 41 CTCCCTCGCGCAGGAGGGCACCGCCCAGATCTGGAAGAGGC CTTCCTCGCGCAGGAGGGCACCGCCCAGATCTGGAAGAGGC < 41bp 1 0.145190658217728 1 0.254026889801025 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3432506 chr4:3432488 nonsynonymous SNV 0.001 0 3 hm5C_associated_SNPs_33329 0 0 0 0 0 Nucleus 1 0.500231643902185 1 0.999536712195629 hm5C_site_33229 DeepMRMD:1;iRNA_m5C:0.999536712195629 33230 chr5 908513 908513 1 + C T SKCM 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCCCGAAATGCCTGCAGGGCGGGCATCGAGCCATCAGATG < 41bp 1 0.608782512804695 1 0.305327832698822 experiment 0.782434974390609 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908513 nonsynonymous SNV 0.050 3 27 hm5C_associated_SNPs_33330 0 0 0 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_33230 DeepMRMD:1;iRNA_m5C:0.999536712157815 33231 chr20 10023937 10023937 1 + G A SKCM 10023948 + 10023928 10023968 41 ACATTTTTGGAAAAAGGAGCCAATCCTAATGCAATCAACTC ACATTTTTGAAAAAAGGAGCCAATCCTAATGCAATCAACTC < 41bp 1 0.0543212996590492 1 0.124373435974121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10023948 chr20:10023937 nonsynonymous SNV 0.986 4 10 hm5C_associated_SNPs_33331 0 0 1 0 1 membrane 1 0.50023164392099 1 0.999536712158021 hm5C_site_33231 DeepMRMD:1;iRNA_m5C:0.999536712158021 33232 chr5 38885518 38885518 1 + G A SKCM 38885507 + 38885487 38885527 41 CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG CCGAGGACTTCAAGACTTTGCACTGTACTTGAGATCCTGGG < 41bp 1 0.366451388429354 1 0.0783508121967316 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSMR ENSG00000145623 CDS Human protein_coding chr5:38885507 chr5:38885518 stopgain 0.983 1 32 hm5C_associated_SNPs_33332 0 0 1 0 2 Nucleus 1 0.500231643300287 1 0.999536713399426 hm5C_site_33232 DeepMRMD:1;iRNA_m5C:0.999536713399426 33233 chr20 30526958 30526958 1 + G A SKCM 30526975 + 30526955 30526995 41 AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA AGGAAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA < 41bp 1 0.204139302593259 1 0.0878711640834808 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30526975 chr20:30526958 nonsynonymous SNV 0.989 3 4 hm5C_associated_SNPs_33333 0 0 0 0 1 exosome 1 0.500231643740406 1 0.999536712519189 hm5C_site_33233 DeepMRMD:1;iRNA_m5C:0.999536712519189 33234 chr5 150639418 150639418 1 + G T SKCM 150639408 + 150639388 150639428 41 ACTCTGGAGCCTGACCCCATCATCGTTCCTGGAAATGTGAC ACTCTGGAGCCTGACCCCATCATCGTTCCTTGAAATGTGAC < 41bp 1 0.480263156318763 1 0.285964816808701 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GM2A ENSG00000196743 CDS Human protein_coding chr5:150639408 chr5:150639418 stopgain 0.180 1 31 hm5C_associated_SNPs_33334 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920169 1 0.999536712159662 hm5C_site_33234 DeepMRMD:1;iRNA_m5C:0.999536712159662 33235 chr16 2106223 2106223 1 + C T SKCM 2106203 + 2106183 2106223 41 GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAC GGTGCTCCCTGCAGGATGATCTGTCTGCTGTGCGTCCGGAT < 41bp 1 0.240743587791694 1 0.176205277442932 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2106203 chr16:2106223 nonsynonymous SNV 0.240 5 41 hm5C_associated_SNPs_33335 0 0 1 0 2 Endoplasmic reticulum 1 0.500221257039125 1 0.999557485921751 hm5C_site_33235 DeepMRMD:1;iRNA_m5C:0.999557485921751 33236 chr7 100732020 100732020 1 + C T SKCM 100732032 + 100732012 100732052 41 GCCCAGCCCAGCCCTGGGGCCGAATCTGGACGGCTCTGGCC GCCCAGCCTAGCCCTGGGGCCGAATCTGGACGGCTCTGGCC < 41bp 1 0.275830645602304 1 0.210716217756271 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100732032 chr7:100732020 nonsynonymous SNV 0.575 2 9 hm5C_associated_SNPs_33336 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33236 DeepMRMD:1;iRNA_m5C:0.999536712157815 33237 chr9 140100306 140100306 1 + G A SKCM 140100319 + 140100299 140100339 41 CTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT CTGGGTCACGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT < 41bp 1 0.366315229739912 1 0.544072031974792 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100319 chr9:140100306 nonsynonymous SNV 0.993 4 8 hm5C_associated_SNPs_33337 0 0 0 0 1 chromatin 1 0.500231643921306 0.911855936050416 0.999536712157388 hm5C_site_33237 DeepMRMD:0.911855936050416;iRNA_m5C:0.999536712157388 33238 chr20 9376258 9376258 1 + C T SKCM 9376240 + 9376220 9376260 41 CCAGCAAACATCTTAGAGGACGATAATGAAGAGGAGATCGA CCAGCAAACATCTTAGAGGACGATAATGAAGAGGAGATTGA < 41bp 1 0.240202325216105 1 0.120026439428329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9376240 chr20:9376258 synonymous SNV . 0 39 hm5C_associated_SNPs_33339 0 0 0 0 2 nucleolus 1 0.500231643921093 1 0.999536712157814 hm5C_site_33238 DeepMRMD:1;iRNA_m5C:0.999536712157814 33239 chr2 189458714 189458714 1 + C T SKCM 189458701 + 189458681 189458721 41 GGGACTAACTCTTGAAGGCACAGTATTTTGTCTCGACCCGT GGGACTAACTCTTGAAGGCACAGTATTTTGTCTTGACCCGT < 41bp 1 0.571912611817823 1 0.11098712682724 experiment 0.856174776364353 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458701 chr2:189458714 synonymous SNV . 0 34 hm5C_associated_SNPs_33340 0 0 1 0 1 Ribosome 1 0.50023164425771 1 0.99953671148458 hm5C_site_33239 DeepMRMD:1;iRNA_m5C:0.99953671148458 33240 chr17 48557331 48557331 1 + C T SKCM 48557327 + 48557307 48557347 41 CCTGGAGGCTGTGGCACAGGCAGCCCACCTGCCTGCAGACT CCTGGAGGCTGTGGCACAGGCAGCTCACCTGCCTGCAGACT < 41bp 1 0.56752408126913 1 0.308143734931946 experiment 0.86495183746174 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48557327 chr17:48557331 synonymous SNV . 0 25 hm5C_associated_SNPs_33341 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33240 DeepMRMD:1;iRNA_m5C:0.999536712157815 33241 chr11 48134384 48134384 1 + C T SKCM 48134404 + 48134384 48134424 41 CTTTCATAAACAGAATGGAACTGGAACACCTCAGGTGGAAA TTTTCATAAACAGAATGGAACTGGAACACCTCAGGTGGAAA < 41bp 1 0.555312963125549 1 0.443437069654465 experiment 0.889374073748901 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48134404 chr11:48134384 synonymous SNV . 0 1 hm5C_associated_SNPs_33342 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921081 1 0.999536712157838 hm5C_site_33241 DeepMRMD:1;iRNA_m5C:0.999536712157838 33242 chr7 2686504 2686504 1 + G A SKCM 2686507 + 2686487 2686527 41 GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTCGC GCCCTGCTGCTCCTGGGAGCCGCCGCCCTGGCCTGCCTCGC < 41bp 1 0.642495904528371 1 0.887982368469238 experiment 0.715008190943259 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686507 chr7:2686504 synonymous SNV . 0 18 hm5C_associated_SNPs_33343 0 0 1 0 1 Ribosome 1 0.500231643921105 0.224035263061524 0.99953671215779 hm5C_site_33242 DeepMRMD:0.224035263061524;iRNA_m5C:0.99953671215779 33243 chr11 68822718 68822718 1 + G A SKCM 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCAGACGTGCGCTACCGCGCTGCTCCCTGGGA < 41bp 1 0.38747360746343 1 0.0748665034770966 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822718 synonymous SNV . 0 12 hm5C_associated_SNPs_33344 0 0 0 0 1 chromatin 1 0.500231647070455 1 0.999536705859091 hm5C_site_33243 DeepMRMD:1;iRNA_m5C:0.999536705859091 33244 chr2 170592455 170592455 1 + G A SKCM 170592441 + 170592421 170592461 41 GATTCAGGGAGCAGAAATACCAGATTATACCAGGGAGAGCT GATTCAGGGAGCAGAAATACCAGATTATACCAGGAAGAGCT < 41bp 1 0.637298769636253 1 0.46435546875 experiment 0.725402460727495 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KLHL23;PHOSPHO2-KLHL23 ENSG00000213160 CDS Human protein_coding chr2:170592441 chr2:170592455 nonsynonymous SNV 0.999 1 35 hm5C_associated_SNPs_33345 0 0 1 0 0 unknown 1 0.500231643921805 1 0.99953671215639 hm5C_site_33244 DeepMRMD:1;iRNA_m5C:0.99953671215639 33245 chr12 3149313 3149313 1 + G A SKCM 3149330 + 3149310 3149350 41 ACCGCATCCACCGGTCCCCGCTCTGTGAGTACATGATCAAC ACCACATCCACCGGTCCCCGCTCTGTGAGTACATGATCAAC < 41bp 1 0.153489797861288 1 0.277596265077591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3149330 chr12:3149313 nonsynonymous SNV 0.935 4 4 hm5C_associated_SNPs_33346 0 0 1 0 1 Cytosol 1 0.500231643827903 1 0.999536712344194 hm5C_site_33245 DeepMRMD:1;iRNA_m5C:0.999536712344194 33246 chr15 94841682 94841682 1 + C A SKCM 94841673 + 94841653 94841693 41 TGATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCGGC TGATCTCCTGGAGGCTGAGGCCTTGGCCCAAGAGGGCCGGC < 41bp 1 0.193655762576859 1 0.142782837152481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841673 chr15:94841682 nonsynonymous SNV 0.286 0 30 hm5C_associated_SNPs_33348 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_33246 DeepMRMD:1;iRNA_m5C:0.999536712157815 33247 chr15 94841682 94841682 1 + C A SKCM 94841674 + 94841654 94841694 41 GATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCGGCC GATCTCCTGGAGGCTGAGGCCTTGGCCCAAGAGGGCCGGCC < 41bp 1 0.693168885959273 1 0.540471136569977 experiment 0.613662228081454 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841674 chr15:94841682 nonsynonymous SNV 0.286 0 29 hm5C_associated_SNPs_33349 0 0 0 0 0 exosome 1 0.500231643921157 0.919057726860046 0.999536712157685 hm5C_site_33247 DeepMRMD:0.919057726860046;iRNA_m5C:0.999536712157685 33248 chr15 63433775 63433775 1 + C A SKCM 63433784 + 63433764 63433804 41 AAGGAAACAAACGTATGGTTCGTGTAGAAAGCAACGGCATT AAGGAAACAAAAGTATGGTTCGTGTAGAAAGCAACGGCATT < 41bp 1 0.248455912258905 1 0.0907750129699707 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LACTB ENSG00000103642 CDS Human protein_coding chr15:63433784 chr15:63433775 nonsynonymous SNV 0.989 1 12 hm5C_associated_SNPs_33350 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33248 DeepMRMD:1;iRNA_m5C:0.999536712157815 33249 chr1 183101638 183101638 1 + C T SKCM 183101623 + 183101603 183101643 41 ACAACCTGCTTCTGAGGACACTGGCAGGAGAAAATCAAACA ACAACCTGCTTCTGAGGACACTGGCAGGAGAAAATTAAACA < 41bp 1 0.234918550195939 1 0.212206065654755 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101623 chr1:183101638 stopgain 0.999 1 36 hm5C_associated_SNPs_33351 0 0 1 0 1 Ribosome 1 0.500231868810351 1 0.999536262379298 hm5C_site_33249 DeepMRMD:1;iRNA_m5C:0.999536262379298 33250 chr1 183101638 183101638 1 + C T SKCM 183101645 + 183101625 183101665 41 GGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGCTTA GGCAGGAGAAAATTAAACAGCATTTGAGATTGAAGAGCTTA < 41bp 1 0.0243740968102306 1 0.0459299981594086 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101645 chr1:183101638 stopgain 0.999 1 14 hm5C_associated_SNPs_33353 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33250 DeepMRMD:1;iRNA_m5C:0.999536712157815 33251 chr2 220349079 220349079 1 + G A SKCM 220349085 + 220349065 220349105 41 GTGCCCTCAGCCGGGGGTCCCCCGGTGCTAGCCGAGAAAGC GTGCCCTCAGCCGGAGGTCCCCCGGTGCTAGCCGAGAAAGC < 41bp 1 0.305132097766047 1 0.397828757762909 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220349085 chr2:220349079 synonymous SNV . 0 15 hm5C_associated_SNPs_33354 0 0 0 0 0 Nucleus 1 0.500231643921095 1 0.999536712157811 hm5C_site_33251 DeepMRMD:1;iRNA_m5C:0.999536712157811 33252 chrX 73043768 73043768 1 + C T SKCM 73043748 - 73043728 73043768 41 GGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGG AGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGG < 41bp 1 0.269188615211588 1 0.244154721498489 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043748 chrX:73043768 . . 0 1 hm5C_associated_SNPs_33355 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_33252 DeepMRMD:1;iRNA_m5C:0.999536712157815 33253 chrX 73043768 73043768 1 + C T SKCM 73043778 - 73043758 73043798 41 AGATAGGAATGAACTATTGGCTTACTGAATGGTGATTACTT AGATAGGAATGAACTATTGGCTTACTGAATAGTGATTACTT < 41bp 1 0.0251117698001265 1 0.0590759515762329 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043778 chrX:73043768 . . 0 31 hm5C_associated_SNPs_33356 0 0 1 0 0 unknown 1 0.500231645301214 1 0.999536709397573 hm5C_site_33253 DeepMRMD:1;iRNA_m5C:0.999536709397573 33254 chr22 44332976 44332976 1 + G A SKCM 44332984 + 44332964 44333004 41 CATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC CATCCTCAGAAGAGATGGATCCTGAGGTCGCCATGCCCAGC < 41bp 1 0.549702270969759 1 0.107577115297318 experiment 0.900595458060482 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332984 chr22:44332976 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_33357 0 0 1 0 1 cytosol 1 0.500231643920903 1 0.999536712158195 hm5C_site_33254 DeepMRMD:1;iRNA_m5C:0.999536712158195 33255 chr17 1651929 1651929 1 + G A SKCM 1651935 + 1651915 1651955 41 CCGAGCCTTACCCAGAGAGACTCCTTCCACCTGGACGAGCA CCGAGCCTTACCCAAAGAGACTCCTTCCACCTGGACGAGCA < 41bp 1 0.26564010243655 1 0.196009486913681 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1651935 chr17:1651929 synonymous SNV . 0 15 hm5C_associated_SNPs_33358 0 0 1 0 1 Endoplasmic reticulum 1 0.50023163834206 1 0.999536723315879 hm5C_site_33255 DeepMRMD:1;iRNA_m5C:0.999536723315879 33256 chr17 1651929 1651929 1 + G A SKCM 1651937 + 1651917 1651957 41 GAGCCTTACCCAGAGAGACTCCTTCCACCTGGACGAGCAGT GAGCCTTACCCAAAGAGACTCCTTCCACCTGGACGAGCAGT < 41bp 1 0.00559444201538811 1 0.127499580383301 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1651937 chr17:1651929 synonymous SNV . 0 13 hm5C_associated_SNPs_33359 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921272 1 0.999536712157457 hm5C_site_33256 DeepMRMD:1;iRNA_m5C:0.999536712157457 33257 chr1 110754769 110754769 1 + C T SKCM 110754749 + 110754729 110754769 41 GGGGCTGCCGCGGCTGGCAGCCCCGCATGTGGGCGCTCTTC GGGGCTGCCGCGGCTGGCAGCCCCGCATGTGGGCGCTCTTT < 41bp 1 0.31959991114428 1 0.593676924705505 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110754749 chr1:110754769 synonymous SNV . 0 41 hm5C_associated_SNPs_33361 0 0 0 0 0 Nucleus 1 0.500231643921092 0.81264615058899 0.999536712157815 hm5C_site_33257 DeepMRMD:0.81264615058899;iRNA_m5C:0.999536712157815 33258 chr1 110754769 110754769 1 + C T SKCM 110754750 + 110754730 110754770 41 GGGCTGCCGCGGCTGGCAGCCCCGCATGTGGGCGCTCTTCG GGGCTGCCGCGGCTGGCAGCCCCGCATGTGGGCGCTCTTTG < 41bp 1 0.410178094938183 1 0.340351641178131 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110754750 chr1:110754769 synonymous SNV . 0 40 hm5C_associated_SNPs_33362 0 0 0 0 0 Nucleus 1 0.500231643921096 1 0.999536712157808 hm5C_site_33258 DeepMRMD:1;iRNA_m5C:0.999536712157808 33259 chr1 110754769 110754769 1 + C T SKCM 110754751 + 110754731 110754771 41 GGCTGCCGCGGCTGGCAGCCCCGCATGTGGGCGCTCTTCGA GGCTGCCGCGGCTGGCAGCCCCGCATGTGGGCGCTCTTTGA < 41bp 1 0.697192656034626 1 0.729332745075226 experiment 0.605614687930747 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110754751 chr1:110754769 synonymous SNV . 0 39 hm5C_associated_SNPs_33363 0 0 0 0 0 Nucleus 1 0.500231643921092 0.541334509849548 0.999536712157815 hm5C_site_33259 DeepMRMD:0.541334509849548;iRNA_m5C:0.999536712157815 33260 chr1 110754769 110754769 1 + C T SKCM 110754752 + 110754732 110754772 41 GCTGCCGCGGCTGGCAGCCCCGCATGTGGGCGCTCTTCGAG GCTGCCGCGGCTGGCAGCCCCGCATGTGGGCGCTCTTTGAG < 41bp 1 0.651114811564085 1 0.459780544042587 experiment 0.69777037687183 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110754752 chr1:110754769 synonymous SNV . 0 38 hm5C_associated_SNPs_33364 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_33260 DeepMRMD:1;iRNA_m5C:0.999536712157816 33261 chr6 33652666 33652666 1 + G A SKCM 33652675 + 33652655 33652695 41 AAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCACCTGCT AAGATCTTCCAAGAGAGCATCGGCCTGGCCATCCACCTGCT < 41bp 1 0.16951971840833 1 0.336635082960129 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33652675 chr6:33652666 synonymous SNV . 0 12 hm5C_associated_SNPs_33365 0 0 1 0 1 Endoplasmic reticulum 1 0.500231671313264 1 0.999536657373471 hm5C_site_33261 DeepMRMD:1;iRNA_m5C:0.999536657373471 33262 chr6 33652667 33652667 1 + G A SKCM 33652675 + 33652655 33652695 41 AAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCACCTGCT AAGATCTTCCAGAAGAGCATCGGCCTGGCCATCCACCTGCT < 41bp 1 0.157654305367596 1 0.255205392837524 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33652675 chr6:33652667 nonsynonymous SNV 0.998 2 13 hm5C_associated_SNPs_33366 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643913078 1 0.999536712173843 hm5C_site_33262 DeepMRMD:1;iRNA_m5C:0.999536712173843 33263 chr1 93998573 93998573 1 + C T SKCM 93998568 + 93998548 93998588 41 GAACGCAAAGTTATTCCCATCATTTCAAAATGTTTGGAAGG GAACGCAAAGTTATTCCCATCATTTTAAAATGTTTGGAAGG < 41bp 1 0.071520195671263 1 0.121656686067581 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:93998568 chr1:93998573 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_33367 0 0 1 0 1 Nucleus 1 0.500231643929851 1 0.999536712140298 hm5C_site_33263 DeepMRMD:1;iRNA_m5C:0.999536712140298 33264 chr13 24823810 24823810 1 + C T SKCM 24823790 + 24823770 24823810 41 TCCTGAAGACTCGGTTGCTGCAGACCCCCAGAAGGAAGACC TCCTGAAGACTCGGTTGCTGCAGACCCCCAGAAGGAAGACT < 41bp 1 0.126765370509651 1 0.363321930170059 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SPATA13 ENSG00000182957 CDS Human protein_coding chr13:24823790 chr13:24823810 nonsynonymous SNV 0.004 0 41 hm5C_associated_SNPs_33368 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33264 DeepMRMD:1;iRNA_m5C:0.999536712157815 33265 chr2 32828126 32828126 1 + T G SKCM 32828127 + 32828107 32828147 41 GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTG GACCAGAAGAGAAGTGGAAGCCTCAGACCTCAAGCTTTTTG < 41bp 1 0.075299342909481 1 0.103388249874115 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32828127 chr2:32828126 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_33369 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33265 DeepMRMD:1;iRNA_m5C:0.999536712157815 33266 chr1 186106694 186106694 1 + C T SKCM 186106679 + 186106659 186106699 41 TGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATCCAAAA TGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATTCAAAA < 41bp 1 0.1417729159224 1 0.29841023683548 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186106679 chr1:186106694 synonymous SNV . 0 36 hm5C_associated_SNPs_33370 0 0 0 0 1 nucleus 1 0.500231643490212 1 0.999536713019575 hm5C_site_33266 DeepMRMD:1;iRNA_m5C:0.999536713019575 33267 chr12 79689913 79689913 1 + C T SKCM 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CGCCTTGGACATGGGGGGCACATCTGATCTTTACGTGAAAG < 41bp 1 0.161472215201228 1 0.282908499240875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689913 nonsynonymous SNV 0.996 4 30 hm5C_associated_SNPs_33371 0 0 0 0 1 Cytosol 1 0.500231643922029 1 0.999536712155943 hm5C_site_33267 DeepMRMD:1;iRNA_m5C:0.999536712155943 33268 chr16 23700989 23700989 1 + T A SKCM 23700976 + 23700956 23700996 41 CTGCACCTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA CTGCACCTCAGCAACGGCAGCGTGCAGATCAACATCTTCCA < 41bp 1 0.179918235168229 1 0.172124326229095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700976 chr16:23700989 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_33373 0 0 1 0 1 Ribosome 1 0.500231651817343 1 0.999536696365313 hm5C_site_33268 DeepMRMD:1;iRNA_m5C:0.999536696365313 33269 chr3 183855532 183855532 1 + C T SKCM 183855522 + 183855502 183855542 41 GATGCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA GATGCCAAGGCTTTGGTGCGCTCTGACTTTTTTCTGGTGTA < 41bp 1 0.372199720459492 1 0.12225678563118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183855522 chr3:183855532 nonsynonymous SNV 0.989 2 31 hm5C_associated_SNPs_33374 0 0 1 0 1 Ribosome 1 0.500231639870177 1 0.999536720259647 hm5C_site_33269 DeepMRMD:1;iRNA_m5C:0.999536720259647 33270 chr10 121203251 121203251 1 + C T SKCM 121203246 + 121203226 121203266 41 CACAAGTTCTCCGAGGAGGCCAAGTCCATCTGCAAGATGGT CACAAGTTCTCCGAGGAGGCCAAGTTCATCTGCAAGATGGT < 41bp 1 0.235504205904885 1 0.449129194021225 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GRK5 ENSG00000198873 CDS Human protein_coding chr10:121203246 chr10:121203251 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_33375 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33270 DeepMRMD:1;iRNA_m5C:0.999536712157815 33271 chr7 36445848 36445848 1 + C T SKCM 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG TCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG < 41bp 1 0.577341333150811 1 0.328485488891602 experiment 0.845317333698378 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445848 synonymous SNV . 0 1 hm5C_associated_SNPs_33376 0 0 1 0 1 Nucleus 1 0.500231644293642 1 0.999536711412715 hm5C_site_33271 DeepMRMD:1;iRNA_m5C:0.999536711412715 33272 chr10 118314752 118314752 1 + G A SKCM 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCAATGC < 41bp 1 0.34712443099016 1 0.313149631023407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314752 nonsynonymous SNV 0.989 5 37 hm5C_associated_SNPs_33377 0 0 0 0 1 unknown 1 0.500231643989908 1 0.999536712020183 hm5C_site_33272 DeepMRMD:1;iRNA_m5C:0.999536712020183 33273 chr10 118314752 118314752 1 + G A SKCM 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCAATGCC < 41bp 1 0.225289807818458 1 0.098625123500824 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314752 nonsynonymous SNV 0.989 5 36 hm5C_associated_SNPs_33378 0 0 0 0 1 unknown 1 0.500231644023789 1 0.999536711952422 hm5C_site_33273 DeepMRMD:1;iRNA_m5C:0.999536711952422 33274 chr10 118314752 118314752 1 + G A SKCM 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCGATTGGACCCCAGCAATGCCAAATTTGT < 41bp 1 0.496287238336053 1 0.0659019351005554 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314752 nonsynonymous SNV 0.989 5 28 hm5C_associated_SNPs_33379 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_33274 DeepMRMD:1;iRNA_m5C:0.999536712157815 33275 chr10 118314752 118314752 1 + G A SKCM 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCGATTGGACCCCAGCAATGCCAAATTTGTG < 41bp 1 0.153544712622741 1 0.125103205442429 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314752 nonsynonymous SNV 0.989 5 27 hm5C_associated_SNPs_33380 0 0 0 0 1 unknown 1 0.500231643932484 1 0.999536712135032 hm5C_site_33275 DeepMRMD:1;iRNA_m5C:0.999536712135032 33276 chr10 118314752 118314752 1 + G A SKCM 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCGATTGGACCCCAGCAATGCCAAATTTGTGG < 41bp 1 0.235358797908763 1 0.155459821224213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314752 nonsynonymous SNV 0.989 5 26 hm5C_associated_SNPs_33381 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_33276 DeepMRMD:1;iRNA_m5C:0.999536712157815 33277 chr10 118314752 118314752 1 + G A SKCM 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCGATTGGACCCCAGCAATGCCAAATTTGTGGATGT < 41bp 1 0.263819758499432 1 0.0946511924266815 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314752 nonsynonymous SNV 0.989 5 22 hm5C_associated_SNPs_33382 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_33277 DeepMRMD:1;iRNA_m5C:0.999536712157815 33278 chr10 118314752 118314752 1 + G A SKCM 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCGATTGGACCCCAGCAATGCCAAATTTGTGGATGTAATTC < 41bp 1 0.382092999498644 1 0.0480976700782776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314752 nonsynonymous SNV 0.989 5 17 hm5C_associated_SNPs_33383 0 0 0 0 1 unknown 1 0.500230073804369 1 0.999539852391263 hm5C_site_33278 DeepMRMD:1;iRNA_m5C:0.999539852391263 33279 chr10 118314752 118314752 1 + G A SKCM 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CGATTGGACCCCAGCAATGCCAAATTTGTGGATGTAATTCA < 41bp 1 0.392655821623222 1 0.187908530235291 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314752 nonsynonymous SNV 0.989 5 16 hm5C_associated_SNPs_33384 0 0 0 0 1 unknown 1 0.500231643923343 1 0.999536712153315 hm5C_site_33279 DeepMRMD:1;iRNA_m5C:0.999536712153315 33280 chr10 12191686 12191686 1 + A T SKCM 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT AATCATTGAAGTTGGAGATTCACCGAAAGATAGAGCTTTAT < 41bp 1 0.585274674608275 1 0.0524718761444092 experiment 0.82945065078345 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191686 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_33385 0 0 1 2 2 Ribosome 1 0.500230073260614 1 0.999539853478771 hm5C_site_33280 DeepMRMD:1;iRNA_m5C:0.999539853478771 33281 chr11 57574420 57574420 1 + C T SKCM 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACGATATAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC < 41bp 1 0.674291769185858 1 0.642877340316772 experiment 0.651416461628284 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574420 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_33386 0 0 1 0 2 Nucleus 1 0.500231643921093 0.714245319366456 0.999536712157815 hm5C_site_33281 DeepMRMD:0.714245319366456;iRNA_m5C:0.999536712157815 33282 chr1 155279924 155279924 1 + G A SKCM 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTCGTTCAGCACTTCTCCCAAATCGTTAGGGT < 41bp 1 0.146610609688575 1 0.116032689809799 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279924 synonymous SNV . 0 30 hm5C_associated_SNPs_33387 0 0 1 0 3 Cytosol 1 0.50023164431718 1 0.99953671136564 hm5C_site_33282 DeepMRMD:1;iRNA_m5C:0.99953671136564 33283 chr22 38201945 38201945 1 + A G SKCM 38201937 + 38201917 38201957 41 GGCATCCAAGCCCAAGAAGGCTGCCTCCAAAGCCCCAACCA GGCATCCAAGCCCAAGAAGGCTGCCTCCGAAGCCCCAACCA < 41bp 1 0.436513046924956 1 0.179684817790985 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control H1F0 ENSG00000189060 CDS Human protein_coding chr22:38201937 chr22:38201945 nonsynonymous SNV 0.988 3 29 hm5C_associated_SNPs_33388 0 0 1 0 0 Ribosome 1 0.500231644276404 1 0.999536711447193 hm5C_site_33283 DeepMRMD:1;iRNA_m5C:0.999536711447193 33284 chr4 57180998 57180998 1 + C T SKCM 57180982 + 57180962 57181002 41 GACCAGGAACGCCTGAAACCCGAAGGACAAAGAGAACACTC GACCAGGAACGCCTGAAACCCGAAGGACAAAGAGAATACTC < 41bp 1 0.650136273724497 1 0.726346850395203 experiment 0.699727452551006 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180982 chr4:57180998 nonsynonymous SNV 0.000 0 37 hm5C_associated_SNPs_33389 0 0 0 0 0 cytosol 1 0.500231643920103 0.547306299209594 0.999536712159794 hm5C_site_33284 DeepMRMD:0.547306299209594;iRNA_m5C:0.999536712159794 33285 chr19 18245446 18245446 1 + C T SKCM 18245431 + 18245411 18245451 41 CACATCAAGCTCACGGACTTCGGCCTGTCCAAGATCGGCCT CACATCAAGCTCACGGACTTCGGCCTGTCCAAGATTGGCCT < 41bp 1 0.272144072124239 1 0.503539800643921 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18245431 chr19:18245446 synonymous SNV . 0 36 hm5C_associated_SNPs_33390 0 0 0 0 2 Cytosol 1 0.500231643921092 0.992920398712158 0.999536712157815 hm5C_site_33285 DeepMRMD:0.992920398712158;iRNA_m5C:0.999536712157815 33286 chr1 161134339 161134339 1 + C T SKCM 161134359 + 161134339 161134379 41 CGGCAGAAAACTCGAAGTACCAAAAAGTTGACAGTACAAAG TGGCAGAAAACTCGAAGTACCAAAAAGTTGACAGTACAAAG < 41bp 1 0.450161267443557 1 0.466075599193573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161134359 chr1:161134339 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_33391 0 0 1 0 1 Cytosol 1 0.500231643921295 1 0.999536712157409 hm5C_site_33286 DeepMRMD:1;iRNA_m5C:0.999536712157409 33287 chr2 105959566 105959566 1 + C T SKCM 105959573 + 105959553 105959593 41 AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGGC AACAGAACCATGATTTAACGCATAGGAAAAGTCCTTCAGGC < 41bp 1 0.471371208763425 1 0.471932142972946 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105959573 chr2:105959566 synonymous SNV . 0 14 hm5C_associated_SNPs_33392 0 0 1 0 1 Ribosome 1 0.500231643403928 1 0.999536713192144 hm5C_site_33287 DeepMRMD:1;iRNA_m5C:0.999536713192144 33288 chr3 17056253 17056253 1 + C T SKCM 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG GCCTCTCCTCTGTGGCCAATCTTATGCAGTGCATGTTGGCG < 41bp 1 0.257009343995209 1 0.0627868175506592 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056253 synonymous SNV . 0 23 hm5C_associated_SNPs_33393 0 0 1 0 1 nucleus 1 0.500232041039064 1 0.999535917921872 hm5C_site_33288 DeepMRMD:1;iRNA_m5C:0.999535917921872 33289 chr22 26291128 26291128 1 + G A SKCM 26291140 + 26291120 26291160 41 CAGCAGACGAGTGGCAGATGCGCTTCGACTGTGCTCAGATG CAGCAGACAAGTGGCAGATGCGCTTCGACTGTGCTCAGATG < 41bp 1 0.0735904891988738 1 0.258588135242462 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26291140 chr22:26291128 nonsynonymous SNV 0.871 1 9 hm5C_associated_SNPs_33394 0 0 1 0 2 chromatin 1 0.500231430458383 1 0.999537139083234 hm5C_site_33289 DeepMRMD:1;iRNA_m5C:0.999537139083234 33290 chr20 45801399 45801399 1 + G A SKCM 45801382 + 45801362 45801402 41 AACTTCTCCGCTGACGGCTTCCACAGTTCGGCCCCAGGAGC AACTTCTCCGCTGACGGCTTCCACAGTTCGGCCCCAGAAGC < 41bp 1 0.311987491616962 1 0.249979794025421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801382 chr20:45801399 nonsynonymous SNV 0.472 3 38 hm5C_associated_SNPs_33395 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33290 DeepMRMD:1;iRNA_m5C:0.999536712157815 33291 chr16 66998560 66998560 1 + G A SKCM 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGGCTGTTCCACAAAGCCATCACACAGAGTGGGGTCAT < 41bp 1 0.500314834289208 1 0.102067887783051 experiment 0.999370331421583 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998560 nonsynonymous SNV 0.842 3 17 hm5C_associated_SNPs_33397 0 0 1 0 2 nucleolus 1 0.500231643839286 1 0.999536712321429 hm5C_site_33291 DeepMRMD:1;iRNA_m5C:0.999536712321429 33292 chr18 13067897 13067897 1 + C T SKCM 13067893 + 13067873 13067913 41 CTTATGGAGGCTGGAAAGCCCTCCCACTAAAATTGATAAAC CTTATGGAGGCTGGAAAGCCCTCCTACTAAAATTGATAAAC < 41bp 1 0.367991694764351 1 0.611255347728729 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13067893 chr18:13067897 nonsynonymous SNV 0.711 4 25 hm5C_associated_SNPs_33398 0 0 1 0 2 Nucleus 1 0.500231643920776 0.777489304542542 0.999536712158448 hm5C_site_33292 DeepMRMD:0.777489304542542;iRNA_m5C:0.999536712158448 33293 chr6 13591963 13591963 1 + C T SKCM 13591954 + 13591934 13591974 41 CCGTCCCGGGTGTGGGAGTTCTACCACTACCGGCGGGAGGT CCGTCCCGGGTGTGGGAGTTCTACCACTATCGGCGGGAGGT < 41bp 1 0.568414720894659 1 0.142677932977676 experiment 0.863170558210682 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13591954 chr6:13591963 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_33399 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_33293 DeepMRMD:1;iRNA_m5C:0.999536712157814 33294 chr8 61757450 61757450 1 + C T SKCM 61757430 + 61757410 61757450 41 ATTTGCTTTGCAGTTGGGGACGGTGGACAGACATTCTTTCC ATTTGCTTTGCAGTTGGGGACGGTGGACAGACATTCTTTCT < 41bp 1 0.160241917263428 1 0.446274638175964 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61757430 chr8:61757450 synonymous SNV . 0 41 hm5C_associated_SNPs_33400 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_33294 DeepMRMD:1;iRNA_m5C:0.999536712157815 33295 chr3 186504002 186504002 1 + G A SKCM 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTAAGCCGTGGTTTTAAGGATCAAAT < 41bp 1 0.216505381545031 1 0.192969530820847 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504002 synonymous SNV . 0 18 hm5C_associated_SNPs_33402 0 0 1 0 2 Nucleus 1 0.500231621838049 1 0.999536756323902 hm5C_site_33295 DeepMRMD:1;iRNA_m5C:0.999536756323902 33296 chr7 4823016 4823016 1 + G A SKCM 4823023 + 4823003 4823043 41 GAGCCGGCAGCCTGAGGGACCCAGCCTCAGACACCTCCTCC GAGCCGGCAGCCTAAGGGACCCAGCCTCAGACACCTCCTCC < 41bp 1 0.142544765538688 1 0.279207646846771 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4823023 chr7:4823016 nonsynonymous SNV 0.980 4 14 hm5C_associated_SNPs_33404 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_33296 DeepMRMD:1;iRNA_m5C:0.999536712157815 33297 chr7 150769149 150769149 1 + C T SKCM 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT TCCTGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT < 41bp 1 0.0674690787139932 1 0.0291681289672852 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769149 nonsynonymous SNV 0.997 5 4 hm5C_associated_SNPs_33405 0 0 1 0 1 Ribosome 1 0.500233856159187 1 0.999532287681625 hm5C_site_33297 DeepMRMD:1;iRNA_m5C:0.999532287681625 33298 chr3 122419650 122419650 1 + C G SKCM 122419655 + 122419635 122419675 41 CTGATAAGCCAGGAGCCAAGCAGTTCTTCCAGGATAAAGCA CTGATAAGCCAGGAGGCAAGCAGTTCTTCCAGGATAAAGCA < 41bp 1 0.236146224645744 1 0.371648013591766 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARP14 ENSG00000173193 CDS Human protein_coding chr3:122419655 chr3:122419650 nonsynonymous SNV 0.028 3 16 hm5C_associated_SNPs_33406 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33298 DeepMRMD:1;iRNA_m5C:0.999536712157815 33299 chrX 73040652 73040652 1 + C T SKCM 73040659 - 73040639 73040679 41 AAGACTCTTGAACTTGTGAACTGATGTGAAATGCAGAATCT AAGACTCTTGAACTTGTGAACTGATGTAAAATGCAGAATCT < 41bp 1 0.1449691026528 1 0.126073569059372 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040659 chrX:73040652 . . 0 28 hm5C_associated_SNPs_33407 0 0 1 0 0 unknown 1 0.500274142873696 1 0.999451714252607 hm5C_site_33299 DeepMRMD:1;iRNA_m5C:0.999451714252607 33300 chrX 73040652 73040652 1 + C T SKCM 73040667 - 73040647 73040687 41 ATAAATGGAAGACTCTTGAACTTGTGAACTGATGTGAAATG ATAAATGGAAGACTCTTGAACTTGTGAACTGATGTAAAATG < 41bp 1 0.0870750873895255 1 0.0433703064918518 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040667 chrX:73040652 . . 0 36 hm5C_associated_SNPs_33408 0 0 1 0 0 unknown 1 0.500231644516157 1 0.999536710967686 hm5C_site_33300 DeepMRMD:1;iRNA_m5C:0.999536710967686 33301 chr4 77661150 77661150 1 + T G SKCM 77661164 + 77661144 77661184 41 TCAGGCTCAGGCCTGGCAAGCGGGTGAAGACAAGAGATCTT TCAGGCGCAGGCCTGGCAAGCGGGTGAAGACAAGAGATCTT < 41bp 1 0.63328442580411 1 0.92111349105835 experiment 0.733431148391781 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661164 chr4:77661150 synonymous SNV . 0 7 hm5C_associated_SNPs_33409 0 0 1 0 0 Ribosome 1 0.50023164222922 0.1577730178833 0.99953671554156 hm5C_site_33301 DeepMRMD:0.1577730178833;iRNA_m5C:0.99953671554156 33302 chr19 38573337 38573337 1 + G A SKCM 38573353 + 38573333 38573373 41 CGCCGCCTCGGCCATGGCCTCCCTCACGGCCTCGCGGGCCC CGCCACCTCGGCCATGGCCTCCCTCACGGCCTCGCGGGCCC < 41bp 1 0.0766893662083487 1 0.0954621136188507 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38573353 chr19:38573337 nonsynonymous SNV 0.128 0 5 hm5C_associated_SNPs_33410 0 0 1 0 0 Ribosome 1 0.500231643921046 1 0.999536712157907 hm5C_site_33302 DeepMRMD:1;iRNA_m5C:0.999536712157907 33303 chrX 12838868 12838868 1 + C T SKCM 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCGCCTTTGAGGCTGTTGTTGTCACAAACACAA < 41bp 1 0.298945895621051 1 0.0761541128158569 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838868 synonymous SNV . 0 28 hm5C_associated_SNPs_33411 0 0 1 0 1 Ribosome 1 0.500231650953044 1 0.999536698093912 hm5C_site_33303 DeepMRMD:1;iRNA_m5C:0.999536698093912 33304 chr20 61449889 61449889 1 + G A SKCM 61449900 + 61449880 61449920 41 GTCCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGC GTCCTCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGC < 41bp 1 0.105608651351608 1 0.0965258777141571 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449900 chr20:61449889 nonsynonymous SNV 0.953 4 10 hm5C_associated_SNPs_33412 0 0 1 0 2 Cytosol 1 0.500231643966325 1 0.999536712067349 hm5C_site_33304 DeepMRMD:1;iRNA_m5C:0.999536712067349 33305 chr20 61449889 61449889 1 + G A SKCM 61449901 + 61449881 61449921 41 TCCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCT TCCTCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCT < 41bp 1 0.214220364529363 1 0.233188092708588 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449901 chr20:61449889 nonsynonymous SNV 0.953 4 9 hm5C_associated_SNPs_33413 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33305 DeepMRMD:1;iRNA_m5C:0.999536712157815 33306 chr20 61449889 61449889 1 + G A SKCM 61449902 + 61449882 61449922 41 CCTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTG CCTCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTG < 41bp 1 0.513432158079064 1 0.552123069763184 experiment 0.973135683841871 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449902 chr20:61449889 nonsynonymous SNV 0.953 4 8 hm5C_associated_SNPs_33414 0 0 1 0 2 Cytosol 1 0.500231643921063 0.895753860473632 0.999536712157874 hm5C_site_33306 DeepMRMD:0.895753860473632;iRNA_m5C:0.999536712157874 33307 chr20 61449889 61449889 1 + G A SKCM 61449903 + 61449883 61449923 41 CTCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGG CTCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGG < 41bp 1 0.332368259411976 1 0.720963776111603 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449903 chr20:61449889 nonsynonymous SNV 0.953 4 7 hm5C_associated_SNPs_33415 0 0 1 0 2 Cytosol 1 0.500231643921092 0.558072447776794 0.999536712157815 hm5C_site_33307 DeepMRMD:0.558072447776794;iRNA_m5C:0.999536712157815 33308 chr20 61449889 61449889 1 + G A SKCM 61449904 + 61449884 61449924 41 TCCAGGTCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGGG TCCAGATCTGCCTGGGCCCCCGGTGAGTGTCCCTGGCTGGG < 41bp 1 0.313380558052495 1 0.639410734176636 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61449904 chr20:61449889 nonsynonymous SNV 0.953 4 6 hm5C_associated_SNPs_33416 0 0 1 0 2 Cytosol 1 0.500231643921093 0.721178531646728 0.999536712157814 hm5C_site_33308 DeepMRMD:0.721178531646728;iRNA_m5C:0.999536712157814 33309 chrX 152954135 152954135 1 + G A SKCM 152954118 + 152954098 152954138 41 CGCGCCCGGGCCCGACGGGGCCCCGGCCAAGGGCGACGGCC CGCGCCCGGGCCCGACGGGGCCCCGGCCAAGGGCGACAGCC < 41bp 1 0.337674446381324 1 0.253291845321655 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152954118 chrX:152954135 nonsynonymous SNV 0.606 0 38 hm5C_associated_SNPs_33417 0 0 1 0 0 Ribosome 1 0.50018084368166 1 0.999638312636679 hm5C_site_33309 DeepMRMD:1;iRNA_m5C:0.999638312636679 33310 chrX 152954135 152954135 1 + G A SKCM 152954119 + 152954099 152954139 41 GCGCCCGGGCCCGACGGGGCCCCGGCCAAGGGCGACGGCCC GCGCCCGGGCCCGACGGGGCCCCGGCCAAGGGCGACAGCCC < 41bp 1 0.575765967974563 1 0.409838140010834 experiment 0.848468064050873 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152954119 chrX:152954135 nonsynonymous SNV 0.606 0 37 hm5C_associated_SNPs_33418 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33310 DeepMRMD:1;iRNA_m5C:0.999536712157815 33311 chr18 77474843 77474843 1 + C T SKCM 77474860 + 77474840 77474880 41 CAGCAGTGAGTCCGAGGGCACGAAGTCCTCCTCCTCCGCCT CAGTAGTGAGTCCGAGGGCACGAAGTCCTCCTCCTCCGCCT < 41bp 1 0.600080810630624 1 0.204707324504852 experiment 0.799838378738753 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77474860 chr18:77474843 synonymous SNV . 0 4 hm5C_associated_SNPs_33419 0 0 1 0 0 chromatin 1 0.500231643920842 1 0.999536712158316 hm5C_site_33311 DeepMRMD:1;iRNA_m5C:0.999536712158316 33312 chr10 118313319 118313319 1 + G A SKCM 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGAAGAACCAATGGGACCATTGGACGCATCACAGGTT < 41bp 1 0.143064762408813 1 0.0746864676475525 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313319 synonymous SNV . 0 7 hm5C_associated_SNPs_33420 0 0 0 0 2 unknown 1 0.500231525108518 1 0.999536949782964 hm5C_site_33312 DeepMRMD:1;iRNA_m5C:0.999536949782964 33313 chr10 118313319 118313319 1 + G A SKCM 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGAAGAACCAATGGGACCATTGGACGCATCACAGGTTG < 41bp 1 0.472603343039546 1 0.11584347486496 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313319 synonymous SNV . 0 6 hm5C_associated_SNPs_33421 0 0 0 0 2 unknown 1 0.500231643920938 1 0.999536712158124 hm5C_site_33313 DeepMRMD:1;iRNA_m5C:0.999536712158124 33314 chr1 46872007 46872007 1 + C T SKCM 46871992 + 46871972 46872012 41 CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGACCCCAC CGAGCCCTGCTGTGTGAGGACATGTTCCGCTTGGATCCCAC < 41bp 1 0.3469845270697 1 0.0752736032009125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH ENSG00000117480 CDS Human protein_coding chr1:46871992 chr1:46872007 synonymous SNV . 0 36 hm5C_associated_SNPs_33422 0 0 1 0 2 Ribosome 1 0.50023164214413 1 0.999536715711739 hm5C_site_33314 DeepMRMD:1;iRNA_m5C:0.999536715711739 33315 chr1 44083235 44083235 1 + C T SKCM 44083229 + 44083209 44083249 41 CACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG CACTCTCGAGTCATCCTTACCTCTATTGATGGTGAGCCAAG < 41bp 1 0.45025438364465 1 0.896922886371613 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083229 chr1:44083235 synonymous SNV . 0 27 hm5C_associated_SNPs_33423 0 0 0 0 1 Ribosome 1 0.500231644973976 0.206154227256774 0.999536710052049 hm5C_site_33315 DeepMRMD:0.206154227256774;iRNA_m5C:0.999536710052049 33316 chr3 32483433 32483433 1 + G A SKCM 32483437 + 32483417 32483457 41 TTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCAC TTTGCGACTTGATAATAATCCTCGCCTTTTACCTGGTCCAC < 41bp 1 0.549572182612623 1 0.0896487534046173 experiment 0.900855634774753 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32483437 chr3:32483433 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_33424 0 0 1 0 1 Ribosome 1 0.500231643921289 1 0.999536712157423 hm5C_site_33316 DeepMRMD:1;iRNA_m5C:0.999536712157423 33317 chr2 239038790 239038790 1 + C T SKCM 239038799 + 239038779 239038819 41 GGAGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA GGAGCTCAGGCTCCACGGAGCAGGCGGCCTGGAGGTACTCA < 41bp 1 0.524460674403921 1 0.87579071521759 experiment 0.951078651192159 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ESPNL ENSG00000144488 CDS Human protein_coding chr2:239038799 chr2:239038790 nonsynonymous SNV 0.002 0 12 hm5C_associated_SNPs_33425 0 0 0 0 1 exosome 1 0.500231643921092 0.24841856956482 0.999536712157815 hm5C_site_33317 DeepMRMD:0.24841856956482;iRNA_m5C:0.999536712157815 33318 chr13 27216450 27216450 1 + C A SKCM 27216436 + 27216416 27216456 41 AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAG AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCAGGGGAG < 41bp 1 0.451939909606462 1 0.33665457367897 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216436 chr13:27216450 synonymous SNV . 0 35 hm5C_associated_SNPs_33426 0 0 1 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33318 DeepMRMD:1;iRNA_m5C:0.999536712157815 33319 chr13 27216450 27216450 1 + C A SKCM 27216437 + 27216417 27216457 41 GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGC GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCAGGGGAGC < 41bp 1 0.182237788345479 1 0.689877390861511 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216437 chr13:27216450 synonymous SNV . 0 34 hm5C_associated_SNPs_33427 0 0 1 0 2 cytosol 1 0.500231643943536 0.620245218276978 0.999536712112929 hm5C_site_33319 DeepMRMD:0.620245218276978;iRNA_m5C:0.999536712112929 33320 chr13 27216450 27216450 1 + C A SKCM 27216438 + 27216418 27216458 41 TGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCT TGAAGAGGAACATTGAGCCCCGGCACTTGTGCAGGGGAGCT < 41bp 1 0.542689864049968 1 0.440671294927597 experiment 0.914620271900064 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216438 chr13:27216450 synonymous SNV . 0 33 hm5C_associated_SNPs_33428 0 0 1 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33320 DeepMRMD:1;iRNA_m5C:0.999536712157815 33321 chr13 27216450 27216450 1 + C A SKCM 27216441 + 27216421 27216461 41 AGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCTCTG AGAGGAACATTGAGCCCCGGCACTTGTGCAGGGGAGCTCTG < 41bp 1 0.210688589538552 1 0.0877862870693207 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216441 chr13:27216450 synonymous SNV . 0 30 hm5C_associated_SNPs_33429 0 0 1 0 2 cytosol 1 0.500231643922196 1 0.999536712155608 hm5C_site_33321 DeepMRMD:1;iRNA_m5C:0.999536712155608 33322 chr2 54858619 54858619 1 + G A SKCM 54858614 + 54858594 54858634 41 ACATGTTTCTGCGGCAGCGGCTGCAGGCCCTGGACACTGGA ACATGTTTCTGCGGCAGCGGCTGCAAGCCCTGGACACTGGA < 41bp 1 0.579319210001576 1 0.598292827606201 experiment 0.841361579996849 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858614 chr2:54858619 synonymous SNV . 0 26 hm5C_associated_SNPs_33430 0 0 1 0 0 Nucleus 1 0.500231643909188 0.803414344787598 0.999536712181624 hm5C_site_33322 DeepMRMD:0.803414344787598;iRNA_m5C:0.999536712181624 33323 chr2 54858619 54858619 1 + G A SKCM 54858617 + 54858597 54858637 41 TGTTTCTGCGGCAGCGGCTGCAGGCCCTGGACACTGGATGG TGTTTCTGCGGCAGCGGCTGCAAGCCCTGGACACTGGATGG < 41bp 1 0.213940278135748 1 0.449246346950531 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858617 chr2:54858619 synonymous SNV . 0 23 hm5C_associated_SNPs_33431 0 0 1 0 0 Nucleus 1 0.50023164392213 1 0.99953671215574 hm5C_site_33323 DeepMRMD:1;iRNA_m5C:0.99953671215574 33324 chr2 54858619 54858619 1 + G A SKCM 54858621 + 54858601 54858641 41 TCTGCGGCAGCGGCTGCAGGCCCTGGACACTGGATGGAACG TCTGCGGCAGCGGCTGCAAGCCCTGGACACTGGATGGAACG < 41bp 1 0.214217470023055 1 0.220507383346558 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858621 chr2:54858619 synonymous SNV . 0 19 hm5C_associated_SNPs_33432 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_33324 DeepMRMD:1;iRNA_m5C:0.999536712157815 33325 chr2 54858619 54858619 1 + G A SKCM 54858628 + 54858608 54858648 41 CAGCGGCTGCAGGCCCTGGACACTGGATGGAACGAGCTCCA CAGCGGCTGCAAGCCCTGGACACTGGATGGAACGAGCTCCA < 41bp 1 0.32781397213277 1 0.267641544342041 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858628 chr2:54858619 synonymous SNV . 0 12 hm5C_associated_SNPs_33433 0 0 1 0 0 Nucleus 1 0.500231933151211 1 0.999536133697579 hm5C_site_33325 DeepMRMD:1;iRNA_m5C:0.999536133697579 33326 chr1 44083233 44083233 1 + A T SKCM 44083229 + 44083209 44083249 41 CACTCTCGAGTCATCCTTACCTCTATCGATGGTGAGCCAAG CACTCTCGAGTCATCCTTACCTCTTTCGATGGTGAGCCAAG < 41bp 1 0.139345644468602 1 0.32758304476738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083229 chr1:44083233 nonsynonymous SNV 0.888 1 25 hm5C_associated_SNPs_33434 0 0 0 0 1 Ribosome 1 0.500231641840641 1 0.999536716318717 hm5C_site_33326 DeepMRMD:1;iRNA_m5C:0.999536716318717 33327 chr9 18504852 18504852 1 + A C SKCM 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGCGGACCGGGACGGCCTATGGGATGCCTGGGG < 41bp 1 0.3416547006581 1 0.274849891662598 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504852 nonsynonymous SNV 0.969 2 11 hm5C_associated_SNPs_33435 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_33327 DeepMRMD:1;iRNA_m5C:0.999536712157815 33328 chr14 37739697 37739697 1 + G A SKCM 37739679 + 37739659 37739699 41 AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAAAA < 41bp 1 0.637091404681531 1 0.52031135559082 experiment 0.725817190636938 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37739679 chr14:37739697 nonsynonymous SNV 0.989 0 39 hm5C_associated_SNPs_33436 0 0 1 0 2 chromatin 1 0.500231643973977 0.95937728881836 0.999536712052046 hm5C_site_33328 DeepMRMD:0.95937728881836;iRNA_m5C:0.999536712052046 33329 chr19 19655245 19655245 1 + G A SKCM 19655244 + 19655224 19655264 41 GACCTGCGCTTCGTGGACAGCGACGGCGAGCTGGCTCCACT GACCTGCGCTTCGTGGACAGCAACGGCGAGCTGGCTCCACT < 41bp 1 0.542186100073063 1 0.211330741643906 experiment 0.915627799853874 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19655244 chr19:19655245 nonsynonymous SNV 0.979 0 22 hm5C_associated_SNPs_33437 0 0 0 0 0 exosome 1 0.500231643921085 1 0.999536712157829 hm5C_site_33329 DeepMRMD:1;iRNA_m5C:0.999536712157829 33330 chr19 3119228 3119228 1 + C T SKCM 3119221 + 3119201 3119241 41 CAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCGGACCAT CAGAACCGGATGGAGGAGAGCAAAGCCTTGTTCCGGACCAT < 41bp 1 0.286356966006671 1 0.435345113277435 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNA11 ENSG00000088256 CDS Human protein_coding chr19:3119221 chr19:3119228 synonymous SNV . 0 28 hm5C_associated_SNPs_33438 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_33330 DeepMRMD:1;iRNA_m5C:0.999536712157815 33331 chr1 155255658 155255658 1 + C T SKCM 155255657 + 155255637 155255677 41 TCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAGATGTACT TCTCGTGGTGCGTGAGGGCTCTGTGGGGAGGAAGATGTACT < 41bp 1 0.592757175073829 1 0.213157206773758 experiment 0.814485649852343 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HCN3 ENSG00000143630 CDS Human protein_coding chr1:155255657 chr1:155255658 synonymous SNV . 0 22 hm5C_associated_SNPs_33439 0 0 0 0 1 chromatin 1 0.500231643919894 1 0.999536712160211 hm5C_site_33331 DeepMRMD:1;iRNA_m5C:0.999536712160211 33332 chrX 73040921 73040921 1 + C A SKCM 73040931 - 73040911 73040951 41 AGTAACACCCCTTTCTTCAGCTGGGGATGGGGAATGGATTA AGTAACACCCCTTTCTTCAGCTGGGGATGGTGAATGGATTA < 41bp 1 0.586457551029373 1 0.704526007175446 experiment 0.827084897941253 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040931 chrX:73040921 . . 0 31 hm5C_associated_SNPs_33440 0 0 1 0 0 unknown 1 0.500231620713387 0.590947985649108 0.999536758573227 hm5C_site_33332 DeepMRMD:0.590947985649108;iRNA_m5C:0.999536758573227 33333 chrX 73040921 73040921 1 + C A SKCM 73040934 - 73040914 73040954 41 CTCAGTAACACCCCTTTCTTCAGCTGGGGATGGGGAATGGA CTCAGTAACACCCCTTTCTTCAGCTGGGGATGGTGAATGGA < 41bp 1 0.258718859100613 1 0.211018174886703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040934 chrX:73040921 . . 0 34 hm5C_associated_SNPs_33441 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_33333 DeepMRMD:1;iRNA_m5C:0.999536712157815 33334 chr1 39799709 39799709 1 + C T SKCM 39799715 + 39799695 39799735 41 ACAGTTGTGCAGTCCATTGACAGAGGTCTTTTGGAGAGAGA ACAGTTGTGCAGTCTATTGACAGAGGTCTTTTGGAGAGAGA < 41bp 1 0.201156748564634 1 0.470612496137619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MACF1 ENSG00000127603 CDS Human protein_coding chr1:39799715 chr1:39799709 synonymous SNV . 0 15 hm5C_associated_SNPs_33443 0 0 0 0 0 Endoplasmic reticulum 1 0.500226945674796 1 0.999546108650408 hm5C_site_33334 DeepMRMD:1;iRNA_m5C:0.999546108650408 33335 chr7 55259426 55259426 1 + G A SKCM 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTAGAGGACCGTCGCTTGGTGCACCGCGA < 41bp 1 0.075492796139961 1 0.243246734142303 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259426 synonymous SNV . 0 15 hm5C_associated_SNPs_33444 1 0 1 0 1 Nucleus 1 0.500231643921619 1 0.999536712156762 hm5C_site_33335 DeepMRMD:1;iRNA_m5C:0.999536712156762 not specified not specified 33336 chr16 57254647 57254647 1 + T C SKCM 57254661 + 57254641 57254681 41 CAGTTTTAAAAGAAGGTAGACAGCTGACCTATGAGAAAGTG CAGTTTCAAAAGAAGGTAGACAGCTGACCTATGAGAAAGTG < 41bp 1 0.308226441611316 1 0.44626447558403 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57254661 chr16:57254647 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_33445 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33336 DeepMRMD:1;iRNA_m5C:0.999536712157815 33337 chr7 5643510 5643510 1 + C T SKCM 5643505 + 5643485 5643525 41 CTGGGACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATC CTGGGACAGGGGACTCAGAGCTCTTTCTCATGAAGCTCATC < 41bp 1 0.153747128122535 1 0.161102563142776 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643505 chr7:5643510 synonymous SNV . 0 26 hm5C_associated_SNPs_33447 0 0 1 0 1 Ribosome 1 0.500231643922369 1 0.999536712155263 hm5C_site_33337 DeepMRMD:1;iRNA_m5C:0.999536712155263 33338 chr8 98657030 98657030 1 + C T SKCM 98657015 + 98656995 98657035 41 CAAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGCGGCCCCCG CAAGCGGGAGGAGGCGGCGGCCGTGCCGGCCGCGGTCCCCG < 41bp 1 0.507213937784835 1 0.457345247268677 experiment 0.985572124430329 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657015 chr8:98657030 nonsynonymous SNV 0.011 0 36 hm5C_associated_SNPs_33448 0 0 1 0 1 Ribosome 1 0.500231643921109 1 0.999536712157783 hm5C_site_33338 DeepMRMD:1;iRNA_m5C:0.999536712157783 33339 chr8 98657030 98657030 1 + C T SKCM 98657027 + 98657007 98657047 41 GGCGGCGGCCGTGCCGGCCGCGGCCCCCGACGACCTGGCCT GGCGGCGGCCGTGCCGGCCGCGGTCCCCGACGACCTGGCCT < 41bp 1 0.605606804054533 1 0.667428374290466 experiment 0.788786391890934 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98657027 chr8:98657030 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_33450 0 0 1 0 1 Ribosome 1 0.500231491068306 0.665143251419068 0.999537017863387 hm5C_site_33339 DeepMRMD:0.665143251419068;iRNA_m5C:0.999537017863387 33340 chr1 155028619 155028619 1 + C T SKCM 155028630 + 155028610 155028650 41 CAGCGTGACCTGGTGGAGATCAGCCCAAACCCAGCTGTCAC CAGCGTGACTTGGTGGAGATCAGCCCAAACCCAGCTGTCAC < 41bp 1 0.573378163232893 1 0.706009924411774 experiment 0.853243673534215 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155028630 chr1:155028619 synonymous SNV . 0 10 hm5C_associated_SNPs_33451 0 0 1 0 1 Ribosome 1 0.500231643921002 0.587980151176452 0.999536712157995 hm5C_site_33340 DeepMRMD:0.587980151176452;iRNA_m5C:0.999536712157995 33341 chr12 113388611 113388611 1 + C T SKCM 113388604 + 113388584 113388624 41 GGACCAGGGGCCCCGCCGCGCAGAGATCCTTGATGAGATGC GGACCAGGGGCCCCGCCGCGCAGAGATTCTTGATGAGATGC < 41bp 1 0.526292002362647 1 0.515929162502289 experiment 0.947415995274707 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113388604 chr12:113388611 synonymous SNV . 0 28 hm5C_associated_SNPs_33452 0 0 0 0 0 Nucleus 1 0.500231641527943 0.968141674995422 0.999536716944114 hm5C_site_33341 DeepMRMD:0.968141674995422;iRNA_m5C:0.999536716944114 33342 chr9 71842716 71842716 1 + C T SKCM 71842734 + 71842714 71842754 41 CTCCAGAGGAGAGACGTCATCAGTATTCTGATTATGATTAT CTTCAGAGGAGAGACGTCATCAGTATTCTGATTATGATTAT < 41bp 1 0.646010645709345 1 0.371872782707214 experiment 0.707978708581311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71842734 chr9:71842716 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_33453 0 0 1 0 2 Nucleus 1 0.500231643929058 1 0.999536712141885 hm5C_site_33342 DeepMRMD:1;iRNA_m5C:0.999536712141885 33343 chr3 58112447 58112447 1 + G A SKCM 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCCTTTCGCACCGGGGAATTACGATGTTA < 41bp 1 0.438851602434311 1 0.0843372941017151 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112447 nonsynonymous SNV 0.966 2 29 hm5C_associated_SNPs_33454 0 0 1 0 1 Cytosol 1 0.500231648913209 1 0.999536702173582 hm5C_site_33343 DeepMRMD:1;iRNA_m5C:0.999536702173582 33344 chr3 58112447 58112447 1 + G A SKCM 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCCTTTCGCACCGGGGAATTACGATGTTAAT < 41bp 1 0.193858398250084 1 0.329795718193054 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112447 nonsynonymous SNV 0.966 2 27 hm5C_associated_SNPs_33455 0 0 1 0 1 Cytosol 1 0.500231634571667 1 0.999536730856667 hm5C_site_33344 DeepMRMD:1;iRNA_m5C:0.999536730856667 33345 chr3 58112447 58112447 1 + G A SKCM 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCCTTTCGCACCGGGGAATTACGATGTTAATA < 41bp 1 0.381531526812465 1 0.874459862709045 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112447 nonsynonymous SNV 0.966 2 26 hm5C_associated_SNPs_33456 0 0 1 0 1 Cytosol 1 0.500231643923916 0.25108027458191 0.999536712152167 hm5C_site_33345 DeepMRMD:0.25108027458191;iRNA_m5C:0.999536712152167 33346 chr12 57600306 57600306 1 + C T SKCM 57600323 + 57600303 57600343 41 AGCCTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC AGCTTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC < 41bp 1 0.0166511387567145 1 0.111043572425842 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600323 chr12:57600306 synonymous SNV . 0 4 hm5C_associated_SNPs_33457 0 0 1 0 1 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33346 DeepMRMD:1;iRNA_m5C:0.999536712157815 33347 chr15 40259715 40259715 1 + C T SKCM 40259728 + 40259708 40259748 41 CAGGCCCCATCCCTGTGCATCAGCTTCGCAGGTACACAGCT CAGGCCCTATCCCTGTGCATCAGCTTCGCAGGTACACAGCT < 41bp 1 0.342793150242294 1 0.471645057201385 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40259728 chr15:40259715 synonymous SNV . 0 8 hm5C_associated_SNPs_33458 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33347 DeepMRMD:1;iRNA_m5C:0.999536712157815 33348 chr4 79440572 79440572 1 + T A SKCM 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCACCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT < 41bp 1 0.188479131873407 1 0.507776319980621 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440572 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_33459 0 0 0 0 2 Nucleus 1 0.500231638989343 0.984447360038758 0.999536722021314 hm5C_site_33348 DeepMRMD:0.984447360038758;iRNA_m5C:0.999536722021314 33349 chr4 79440572 79440572 1 + T A SKCM 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCACCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT < 41bp 1 0.427895860166925 1 0.65088278055191 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440572 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_33460 0 0 0 0 2 Nucleus 1 0.500231643923559 0.69823443889618 0.999536712152882 hm5C_site_33349 DeepMRMD:0.69823443889618;iRNA_m5C:0.999536712152882 33350 chr22 42262864 42262864 1 + G C SKCM 42262872 + 42262852 42262892 41 AGTAATCAAGTGGGAGAGTTCCCTGACTTGTTTTCAGAACA AGTAATCAAGTGCGAGAGTTCCCTGACTTGTTTTCAGAACA < 41bp 1 0.0739154388945082 1 0.337266564369202 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42262872 chr22:42262864 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_33461 0 0 1 0 1 Ribosome 1 0.500233598533641 1 0.999532802932718 hm5C_site_33350 DeepMRMD:1;iRNA_m5C:0.999532802932718 33351 chr15 40259718 40259718 1 + C T SKCM 40259728 + 40259708 40259748 41 CAGGCCCCATCCCTGTGCATCAGCTTCGCAGGTACACAGCT CAGGCCCCATTCCTGTGCATCAGCTTCGCAGGTACACAGCT < 41bp 1 0.318786344534884 1 0.414187610149384 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40259728 chr15:40259718 synonymous SNV . 0 11 hm5C_associated_SNPs_33462 0 0 1 0 0 Ribosome 1 0.500231643931759 1 0.999536712136482 hm5C_site_33351 DeepMRMD:1;iRNA_m5C:0.999536712136482 33352 chr2 113950937 113950937 1 + C T SKCM 113950934 + 113950914 113950954 41 CACCATTGCAATCCGGGGATCTTCCCCTCAGTAGGTAGGGA CACCATTGCAATCCGGGGATCTTTCCCTCAGTAGGTAGGGA < 41bp 1 0.0182506401623652 1 0.10231751203537 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950934 chr2:113950937 synonymous SNV . 0 24 hm5C_associated_SNPs_33463 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_33352 DeepMRMD:1;iRNA_m5C:0.999536712157815 33353 chrX 99920248 99920248 1 + C T SKCM 99920250 + 99920230 99920270 41 ATCTTGGCAGACATAGATCCCCCCAAGATCCGCTGTCCCCA ATCTTGGCAGACATAGATTCCCCCAAGATCCGCTGTCCCCA < 41bp 1 0.646844261039931 1 0.250901103019714 experiment 0.706311477920139 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99920250 chrX:99920248 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_33464 0 0 0 0 1 nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_33353 DeepMRMD:1;iRNA_m5C:0.999536712157814 33354 chr8 104343684 104343684 1 + C T SKCM 104343665 + 104343645 104343685 41 CCAAGCAGCCTCAAAGGTTCCACATCTCTGCTTGTTCACCC CCAAGCAGCCTCAAAGGTTCCACATCTCTGCTTGTTCACTC < 41bp 1 0.54043497358213 1 0.0437003970146179 experiment 0.91913005283574 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104343665 chr8:104343684 nonsynonymous SNV 0.267 0 40 hm5C_associated_SNPs_33465 0 0 1 0 0 Ribosome 1 0.500227999924766 1 0.999544000150469 hm5C_site_33354 DeepMRMD:1;iRNA_m5C:0.999544000150469 33355 chr2 86360313 86360313 1 + C T SKCM 86360303 + 86360283 86360323 41 TTTTTGCCTTCATCACAGTTCCAAGTTCTTCGATTTGATTT TTTTTGCCTTCATCACAGTTCCAAGTTCTTTGATTTGATTT < 41bp 1 0.0792890300817248 1 0.068117618560791 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360303 chr2:86360313 synonymous SNV . 0 31 hm5C_associated_SNPs_33466 0 0 1 0 2 Nucleus 1 0.500231644950138 1 0.999536710099725 hm5C_site_33355 DeepMRMD:1;iRNA_m5C:0.999536710099725 33356 chr14 104124113 104124113 1 + C T SKCM 104124107 + 104124087 104124127 41 AAATATGATGACGACATTTCCCCATCCGTGAGTGGCTCTGT AAATATGATGACGACATTTCCCCATCTGTGAGTGGCTCTGT < 41bp 1 0.13997720835143 1 0.196434140205383 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124107 chr14:104124113 synonymous SNV . 0 27 hm5C_associated_SNPs_33467 0 0 1 0 1 Cytosol 1 0.500231588291837 1 0.999536823416326 hm5C_site_33356 DeepMRMD:1;iRNA_m5C:0.999536823416326 33357 chr14 104124113 104124113 1 + C T SKCM 104124108 + 104124088 104124128 41 AATATGATGACGACATTTCCCCATCCGTGAGTGGCTCTGTA AATATGATGACGACATTTCCCCATCTGTGAGTGGCTCTGTA < 41bp 1 0.0563167178923948 1 0.160497933626175 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124108 chr14:104124113 synonymous SNV . 0 26 hm5C_associated_SNPs_33468 0 0 1 0 1 Cytosol 1 0.500231643869526 1 0.999536712260948 hm5C_site_33357 DeepMRMD:1;iRNA_m5C:0.999536712260948 33358 chr14 104124113 104124113 1 + C T SKCM 104124112 + 104124092 104124132 41 TGATGACGACATTTCCCCATCCGTGAGTGGCTCTGTAGCAA TGATGACGACATTTCCCCATCTGTGAGTGGCTCTGTAGCAA < 41bp 1 0.332079554799455 1 0.159609407186508 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124112 chr14:104124113 synonymous SNV . 0 22 hm5C_associated_SNPs_33469 0 0 1 0 1 Cytosol 1 0.500231643920997 1 0.999536712158005 hm5C_site_33358 DeepMRMD:1;iRNA_m5C:0.999536712158005 33359 chr15 69714755 69714755 1 + C T SKCM 69714749 + 69714729 69714769 41 GTCAGAAAAGAGAAGCTATGCCCAATCCAAAGACTTCTTCT GTCAGAAAAGAGAAGCTATGCCCAATTCAAAGACTTCTTCT < 41bp 1 0.54138800453636 1 0.117835640907288 experiment 0.91722399092728 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714749 chr15:69714755 nonsynonymous SNV 0.914 1 27 hm5C_associated_SNPs_33470 0 0 1 0 2 Nucleus 1 0.5002322168226 1 0.9995355663548 hm5C_site_33359 DeepMRMD:1;iRNA_m5C:0.9995355663548 33360 chr19 40884017 40884017 1 + C T SKCM 40884016 + 40883996 40884036 41 TTTCCTGAGGGACTGGGACTCCCCTTACAGCCATGACCTTG TTTCCTGAGGGACTGGGACTCTCCTTACAGCCATGACCTTG < 41bp 1 0.697431237009844 1 0.458533525466919 experiment 0.605137525980312 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40884016 chr19:40884017 synonymous SNV . 0 22 hm5C_associated_SNPs_33471 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157817 hm5C_site_33360 DeepMRMD:1;iRNA_m5C:0.999536712157817 33361 chr19 40884017 40884017 1 + C T SKCM 40884018 + 40883998 40884038 41 TCCTGAGGGACTGGGACTCCCCTTACAGCCATGACCTTGAC TCCTGAGGGACTGGGACTCTCCTTACAGCCATGACCTTGAC < 41bp 1 0.331559756413121 1 0.140905261039734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40884018 chr19:40884017 synonymous SNV . 0 20 hm5C_associated_SNPs_33472 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921096 1 0.999536712157808 hm5C_site_33361 DeepMRMD:1;iRNA_m5C:0.999536712157808 33362 chr3 184062653 184062653 1 + C T SKCM 184062638 + 184062618 184062658 41 GAGCCAGCCCCCTGCAAGGACTGCCAGCCACTCTGCCCACC GAGCCAGCCCCCTGCAAGGACTGCCAGCCACTCTGTCCACC < 41bp 1 0.385264947621967 1 0.0244448781013489 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM131A ENSG00000175182 CDS Human protein_coding chr3:184062638 chr3:184062653 synonymous SNV . 0 36 hm5C_associated_SNPs_33473 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_33362 DeepMRMD:1;iRNA_m5C:0.999536712157815 33363 chr7 142459787 142459787 1 + C T SKCM 142459770 + 142459750 142459790 41 TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCTCGC < 41bp 1 0.325235756629286 1 0.112100124359131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459770 chr7:142459787 synonymous SNV . 0 38 hm5C_associated_SNPs_33475 0 0 0 0 1 Cytosol 1 0.500231555619816 1 0.999536888760368 hm5C_site_33363 DeepMRMD:1;iRNA_m5C:0.999536888760368 33364 chr7 142459787 142459787 1 + C T SKCM 142459774 + 142459754 142459794 41 AATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGCGTGT AATCAAGCTCTCCTCACGTGCAGTAATCAACGCTCGCGTGT < 41bp 1 0.677239482478924 1 0.0662745535373688 experiment 0.645521035042151 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459774 chr7:142459787 synonymous SNV . 0 34 hm5C_associated_SNPs_33476 0 0 0 0 1 Cytosol 1 0.500231191940539 1 0.999537616118922 hm5C_site_33364 DeepMRMD:1;iRNA_m5C:0.999537616118922 33365 chr7 142459787 142459787 1 + C T SKCM 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTGCAGTAATCAACGCTCGCGTGTCCACCATCTC < 41bp 1 0.43170708782518 1 0.104264438152313 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459787 synonymous SNV . 0 24 hm5C_associated_SNPs_33478 0 0 0 0 1 Cytosol 1 0.500231624617335 1 0.999536750765331 hm5C_site_33365 DeepMRMD:1;iRNA_m5C:0.999536750765331 33366 chr7 142459787 142459787 1 + C T SKCM 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTGCAGTAATCAACGCTCGCGTGTCCACCATCTCTC < 41bp 1 0.69674803209076 1 0.0709291398525238 experiment 0.60650393581848 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459787 synonymous SNV . 0 22 hm5C_associated_SNPs_33479 0 0 0 0 1 Cytosol 1 0.500231683930137 1 0.999536632139727 hm5C_site_33366 DeepMRMD:1;iRNA_m5C:0.999536632139727 33367 chr7 142459787 142459787 1 + C T SKCM 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CGTGCAGTAATCAACGCTCGCGTGTCCACCATCTCTCTGCC < 41bp 1 0.519972433301905 1 0.0967903137207031 experiment 0.96005513339619 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459787 synonymous SNV . 0 18 hm5C_associated_SNPs_33481 0 0 0 0 1 Cytosol 1 0.500231592564505 1 0.99953681487099 hm5C_site_33367 DeepMRMD:1;iRNA_m5C:0.99953681487099 33368 chr7 142459787 142459787 1 + C T SKCM 142459795 + 142459775 142459815 41 AGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCG AGTAATCAACGCTCGCGTGTCCACCATCTCTCTGCCCACCG < 41bp 1 0.354338248789937 1 0.0985296964645386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459795 chr7:142459787 synonymous SNV . 0 13 hm5C_associated_SNPs_33482 0 0 0 0 1 Cytosol 1 0.500231685052015 1 0.999536629895969 hm5C_site_33368 DeepMRMD:1;iRNA_m5C:0.999536629895969 33369 chr7 142459787 142459787 1 + C T SKCM 142459798 + 142459778 142459818 41 AATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCC AATCAACGCTCGCGTGTCCACCATCTCTCTGCCCACCGCCC < 41bp 1 0.194633162821578 1 0.0337187647819519 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459798 chr7:142459787 synonymous SNV . 0 10 hm5C_associated_SNPs_33483 0 0 0 0 1 Cytosol 1 0.500231643921068 1 0.999536712157864 hm5C_site_33369 DeepMRMD:1;iRNA_m5C:0.999536712157864 33370 chr7 142459787 142459787 1 + C T SKCM 142459799 + 142459779 142459819 41 ATCAACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCC ATCAACGCTCGCGTGTCCACCATCTCTCTGCCCACCGCCCC < 41bp 1 0.428987677546738 1 0.206883579492569 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459799 chr7:142459787 synonymous SNV . 0 9 hm5C_associated_SNPs_33484 0 0 0 0 1 Cytosol 1 0.500231626494285 1 0.999536747011429 hm5C_site_33370 DeepMRMD:1;iRNA_m5C:0.999536747011429 33371 chr7 142459787 142459787 1 + C T SKCM 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCTCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC < 41bp 1 0.450792152395823 1 0.341342955827713 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459787 synonymous SNV . 0 6 hm5C_associated_SNPs_33485 0 0 0 0 1 Cytosol 1 0.500231643920733 1 0.999536712158534 hm5C_site_33371 DeepMRMD:1;iRNA_m5C:0.999536712158534 33372 chr7 142459787 142459787 1 + C T SKCM 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCTCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG < 41bp 1 0.656097164498472 1 0.392426759004593 experiment 0.687805671003056 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459787 synonymous SNV . 0 4 hm5C_associated_SNPs_33486 0 0 0 0 1 Cytosol 1 0.500231614075087 1 0.999536771849827 hm5C_site_33372 DeepMRMD:1;iRNA_m5C:0.999536771849827 33373 chr7 142459787 142459787 1 + C T SKCM 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CTCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC < 41bp 1 0.585326582595256 1 0.239651262760162 experiment 0.829346834809487 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459787 synonymous SNV . 0 2 hm5C_associated_SNPs_33487 0 0 0 0 1 Cytosol 1 0.500231643921088 1 0.999536712157823 hm5C_site_33373 DeepMRMD:1;iRNA_m5C:0.999536712157823 33374 chr3 184062652 184062652 1 + G T SKCM 184062638 + 184062618 184062658 41 GAGCCAGCCCCCTGCAAGGACTGCCAGCCACTCTGCCCACC GAGCCAGCCCCCTGCAAGGACTGCCAGCCACTCTTCCCACC < 41bp 1 0.449924397749683 1 0.119371801614761 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM131A ENSG00000175182 CDS Human protein_coding chr3:184062638 chr3:184062652 nonsynonymous SNV 0.561 2 35 hm5C_associated_SNPs_33488 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_33374 DeepMRMD:1;iRNA_m5C:0.999536712157815 33375 chr6 24423265 24423265 1 + C T SKCM 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCTATTGCCT < 41bp 1 0.470769500236495 1 0.0627591907978058 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423265 nonsynonymous SNV 0.729 3 34 hm5C_associated_SNPs_33489 0 0 1 0 1 Ribosome 1 0.50023164392545 1 0.999536712149099 hm5C_site_33375 DeepMRMD:1;iRNA_m5C:0.999536712149099 33376 chr6 31928246 31928246 1 + C T SKCM 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTTCTTG < 41bp 1 0.311251112631504 1 0.126180171966553 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928246 nonsynonymous SNV 0.984 4 37 hm5C_associated_SNPs_33491 0 0 1 0 2 chromatin 1 0.50023164036318 1 0.999536719273641 hm5C_site_33376 DeepMRMD:1;iRNA_m5C:0.999536719273641 33377 chr4 79440574 79440574 1 + C T SKCM 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCTCTTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT < 41bp 1 0.166767739112437 1 0.572327017784119 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440574 synonymous SNV . 0 7 hm5C_associated_SNPs_33492 0 0 0 0 2 Nucleus 1 0.500231643714323 0.855345964431762 0.999536712571355 hm5C_site_33377 DeepMRMD:0.855345964431762;iRNA_m5C:0.999536712571355 33378 chr4 79440574 79440574 1 + C T SKCM 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCTCTTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT < 41bp 1 0.45651790132914 1 0.500733613967896 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440574 synonymous SNV . 0 6 hm5C_associated_SNPs_33493 0 0 0 0 2 Nucleus 1 0.500231643924778 0.998532772064208 0.999536712150443 hm5C_site_33378 DeepMRMD:0.998532772064208;iRNA_m5C:0.999536712150443 33379 chr16 67914531 67914531 1 + C T SKCM 67914550 + 67914530 67914570 41 CCCCTAGCCGCACTCGTTCCCCTGATGTCATCTCCTCAGCT CTCCTAGCCGCACTCGTTCCCCTGATGTCATCTCCTCAGCT < 41bp 1 0.420038310425249 1 0.136810094118118 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914550 chr16:67914531 synonymous SNV . 0 2 hm5C_associated_SNPs_33494 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_33379 DeepMRMD:1;iRNA_m5C:0.999536712157814 33380 chr22 18570761 18570761 1 + C T SKCM 18570741 + 18570721 18570761 41 CTCCCTCTGCCCTGCAGCTTCCCCTTCCTCCCTGCACTTCC CTCCCTCTGCCCTGCAGCTTCCCCTTCCTCCCTGCACTTCT < 41bp 1 0.178349933416757 1 0.0340075790882111 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX26 ENSG00000215193 CDS Human protein_coding chr22:18570741 chr22:18570761 nonsynonymous SNV 0.974 2 41 hm5C_associated_SNPs_33495 0 0 1 0 1 Ribosome 1 0.500231643960423 1 0.999536712079153 hm5C_site_33380 DeepMRMD:1;iRNA_m5C:0.999536712079153 33381 chr22 29678492 29678492 1 + C G SKCM 29678503 + 29678483 29678523 41 CCCAGGTACCTGGGAGCTACCCCATGCAGCCAGTCACTGCA CCCAGGTACGTGGGAGCTACCCCATGCAGCCAGTCACTGCA < 41bp 1 0.411487189483985 1 0.417688965797424 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29678503 chr22:29678492 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_33496 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_33381 DeepMRMD:1;iRNA_m5C:0.999536712157815 33382 chr6 7579664 7579664 1 + G A SKCM 7579653 + 7579633 7579673 41 CCAGTTCAAAGCGAAGCTTGCGAGCCTGGAGGAGCTGAAGA CCAGTTCAAAGCGAAGCTTGCGAGCCTGGAGAAGCTGAAGA < 41bp 1 0.282508457997094 1 0.334140181541443 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579653 chr6:7579664 nonsynonymous SNV 0.998 2 32 hm5C_associated_SNPs_33497 0 0 1 0 0 Nucleus 1 0.500231666482687 1 0.999536667034627 hm5C_site_33382 DeepMRMD:1;iRNA_m5C:0.999536667034627 33383 chr19 48254252 48254252 1 + C T SKCM 48254270 + 48254250 48254290 41 CCCCGGGAGGTGCGCAGGGCCCAGGCCCGGCTCCTCAACCC CCTCGGGAGGTGCGCAGGGCCCAGGCCCGGCTCCTCAACCC < 41bp 1 0.628312821862064 1 0.406654566526413 experiment 0.743374356275873 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254270 chr19:48254252 synonymous SNV . 0 3 hm5C_associated_SNPs_33499 0 0 1 0 0 unknown 1 0.500231643921064 1 0.999536712157871 hm5C_site_33383 DeepMRMD:1;iRNA_m5C:0.999536712157871 33384 chrX 73040680 73040680 1 + C T SKCM 73040667 - 73040647 73040687 41 ATAAATGGAAGACTCTTGAACTTGTGAACTGATGTGAAATG ATAAATGAAAGACTCTTGAACTTGTGAACTGATGTGAAATG < 41bp 1 0.086442787231144 1 0.0445093214511871 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040667 chrX:73040680 . . 0 8 hm5C_associated_SNPs_33500 0 0 1 1 0 unknown 1 0.500231652229341 1 0.999536695541318 hm5C_site_33384 DeepMRMD:1;iRNA_m5C:0.999536695541318 33385 chrX 73040680 73040680 1 + C T SKCM 73040673 - 73040653 73040693 41 GCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGATGT GCTAAGATAAATGAAAGACTCTTGAACTTGTGAACTGATGT < 41bp 1 0.282926647804644 1 0.574378848075867 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040673 chrX:73040680 . . 0 14 hm5C_associated_SNPs_33501 0 0 1 1 0 unknown 1 0.500231640581022 0.851242303848266 0.999536718837955 hm5C_site_33385 DeepMRMD:0.851242303848266;iRNA_m5C:0.999536718837955 33386 chrX 73040680 73040680 1 + C T SKCM 73040675 - 73040655 73040695 41 AAGCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGAT AAGCTAAGATAAATGAAAGACTCTTGAACTTGTGAACTGAT < 41bp 1 0.0652967153062086 1 0.173746675252914 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040675 chrX:73040680 . . 0 16 hm5C_associated_SNPs_33502 0 0 1 1 0 unknown 1 0.500231643232589 1 0.999536713534823 hm5C_site_33386 DeepMRMD:1;iRNA_m5C:0.999536713534823 33387 chr12 53516963 53516963 1 + C T SKCM 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCCTGGGGTTCTTTTATCCCGTCATGCTGAT < 41bp 1 0.0597116654744971 1 0.0297841429710388 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516963 synonymous SNV . 0 24 hm5C_associated_SNPs_33503 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33387 DeepMRMD:1;iRNA_m5C:0.999536712157815 33388 chr2 27900715 27900715 1 + G A SKCM 27900703 + 27900683 27900723 41 TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAGG TGTCCCGGAAGAAACTTCACCTGAGAACTTTTAAACTGAGG < 41bp 1 0.252218761035658 1 0.304866790771484 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900703 chr2:27900715 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_33504 0 0 1 0 1 nucleoplasm 1 0.500231643918409 1 0.999536712163181 hm5C_site_33388 DeepMRMD:1;iRNA_m5C:0.999536712163181 33389 chr1 36645654 36645654 1 + C T SKCM 36645659 + 36645639 36645679 41 AAGCTGTGGTGCAGTCCCCGCAGGTCACAGGTAGATCTCCT AAGCTGTGGTGCAGTTCCCGCAGGTCACAGGTAGATCTCCT < 41bp 1 0.374530350462306 1 0.91326630115509 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36645659 chr1:36645654 nonsynonymous SNV 0.974 3 16 hm5C_associated_SNPs_33506 0 0 1 0 1 Ribosome 1 0.500222881203448 0.17346739768982 0.999554237593105 hm5C_site_33389 DeepMRMD:0.17346739768982;iRNA_m5C:0.999554237593105 33390 chr16 30976345 30976345 1 + C T SKCM 30976360 + 30976340 30976380 41 GGCCTCCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAA GGCCTTCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAA < 41bp 1 0.0872493770732798 1 0.0714300274848938 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976360 chr16:30976345 nonsynonymous SNV 0.998 3 6 hm5C_associated_SNPs_33507 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33390 DeepMRMD:1;iRNA_m5C:0.999536712157815 33391 chr16 30976345 30976345 1 + C T SKCM 30976361 + 30976341 30976381 41 GCCTCCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAAC GCCTTCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAAC < 41bp 1 0.172401832327021 1 0.028911292552948 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976361 chr16:30976345 nonsynonymous SNV 0.998 3 5 hm5C_associated_SNPs_33508 0 0 1 0 0 Cytosol 1 0.50023164588878 1 0.99953670822244 hm5C_site_33391 DeepMRMD:1;iRNA_m5C:0.99953670822244 33392 chr16 30976345 30976345 1 + C T SKCM 30976363 + 30976343 30976383 41 CTCCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCT CTTCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCT < 41bp 1 0.1478639863214 1 0.065513551235199 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976363 chr16:30976345 nonsynonymous SNV 0.998 3 3 hm5C_associated_SNPs_33509 0 0 1 0 0 Cytosol 1 0.500231642346162 1 0.999536715307677 hm5C_site_33392 DeepMRMD:1;iRNA_m5C:0.999536715307677 33393 chr16 30976345 30976345 1 + C T SKCM 30976364 + 30976344 30976384 41 TCCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTG TTCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTG < 41bp 1 0.304730519830529 1 0.337245434522629 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976364 chr16:30976345 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_33510 0 0 1 0 0 Cytosol 1 0.500231643921329 1 0.999536712157341 hm5C_site_33393 DeepMRMD:1;iRNA_m5C:0.999536712157341 33394 chr16 30976345 30976345 1 + C T SKCM 30976365 + 30976345 30976385 41 CCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTGG TCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTGG < 41bp 1 0.436144718146236 1 0.483282864093781 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976365 chr16:30976345 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_33511 0 0 1 0 0 Cytosol 1 0.500231643921289 1 0.999536712157421 hm5C_site_33394 DeepMRMD:1;iRNA_m5C:0.999536712157421 33395 chr2 238976788 238976788 1 + C T SKCM 238976802 + 238976782 238976822 41 AATCTTCACTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA AATCTTTACTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA < 41bp 1 0.363037884283674 1 0.358593165874481 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCLY ENSG00000132330 CDS Human protein_coding chr2:238976802 chr2:238976788 synonymous SNV . 0 7 hm5C_associated_SNPs_33512 0 0 1 0 2 Ribosome 1 0.500231643920165 1 0.999536712159671 hm5C_site_33395 DeepMRMD:1;iRNA_m5C:0.999536712159671 33396 chr1 10689629 10689629 1 + C T SKCM 10689614 + 10689594 10689634 41 GTTCCCTCCATCCCCATCAGCCCCGAAGATCCCCTCCTGGC GTTCCCTCCATCCCCATCAGCCCCGAAGATCCCCTTCTGGC < 41bp 1 0.260288312746537 1 0.0445155203342438 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PEX14 ENSG00000142655 CDS Human protein_coding chr1:10689614 chr1:10689629 nonsynonymous SNV 0.996 4 36 hm5C_associated_SNPs_33513 0 0 1 0 1 Ribosome 1 0.500231643915406 1 0.999536712169187 hm5C_site_33396 DeepMRMD:1;iRNA_m5C:0.999536712169187 33397 chrX 48457753 48457753 1 + G A SKCM 48457763 + 48457743 48457783 41 CTTTGAGGATGATCCTCGGGCCCTGGGGGCCCGTGGGCACC CTTTGAGGATAATCCTCGGGCCCTGGGGGCCCGTGGGCACC < 41bp 1 0.147303708737304 1 0.0531412065029144 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457763 chrX:48457753 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_33514 0 0 1 0 1 Ribosome 1 0.500231682294549 1 0.999536635410902 hm5C_site_33397 DeepMRMD:1;iRNA_m5C:0.999536635410902 33398 chrX 48457753 48457753 1 + G A SKCM 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TAATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG < 41bp 1 0.29467468506065 1 0.0485102534294128 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457753 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_33515 0 0 1 0 1 Ribosome 1 0.500231643729189 1 0.999536712541623 hm5C_site_33398 DeepMRMD:1;iRNA_m5C:0.999536712541623 33399 chrX 48457753 48457753 1 + G A SKCM 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT AATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT < 41bp 1 0.287817113596433 1 0.344213902950287 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457753 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_33516 0 0 1 0 1 Ribosome 1 0.500231643921035 1 0.99953671215793 hm5C_site_33399 DeepMRMD:1;iRNA_m5C:0.99953671215793 33400 chr6 127607950 127607950 1 + T G SKCM 127607952 + 127607932 127607972 41 TCTATGTGTAAAAGGAGCTTCATGGCTTGGAAAGCGGTGTG TCTATGTGTAAAAGGAGCGTCATGGCTTGGAAAGCGGTGTG < 41bp 1 0.558647577435881 1 0.411338567733765 experiment 0.882704845128238 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF146 ENSG00000118518 CDS Human protein_coding chr6:127607952 chr6:127607950 synonymous SNV . 0 19 hm5C_associated_SNPs_33518 0 0 0 0 0 cytosol 1 0.500231634931162 1 0.999536730137677 hm5C_site_33400 DeepMRMD:1;iRNA_m5C:0.999536730137677 33401 chr14 24568320 24568320 1 + C A SKCM 24568331 + 24568311 24568351 41 GTGCCCGACCAGCGGGAGATCATCTCCTTCGGCAGCGGCTA GTGCCCGACAAGCGGGAGATCATCTCCTTCGGCAGCGGCTA < 41bp 1 0.262801512692618 1 0.128296136856079 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24568331 chr14:24568320 nonsynonymous SNV 0.997 0 10 hm5C_associated_SNPs_33519 0 0 1 0 1 Endoplasmic reticulum 1 0.500231646704398 1 0.999536706591204 hm5C_site_33401 DeepMRMD:1;iRNA_m5C:0.999536706591204 33402 chr1 957730 957730 1 + G A SKCM 957712 + 957692 957732 41 AACCAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTGAA AACCAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTAAA < 41bp 1 0.46678660080258 1 0.134109258651733 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957712 chr1:957730 synonymous SNV . 0 39 hm5C_associated_SNPs_33520 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33402 DeepMRMD:1;iRNA_m5C:0.999536712157815 33403 chr1 957730 957730 1 + G A SKCM 957715 + 957695 957735 41 CAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTGAACCC CAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTAAACCC < 41bp 1 0.588929383058723 1 0.548039853572845 experiment 0.822141233882553 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957715 chr1:957730 synonymous SNV . 0 36 hm5C_associated_SNPs_33521 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643916298 0.90392029285431 0.999536712167403 hm5C_site_33403 DeepMRMD:0.90392029285431;iRNA_m5C:0.999536712167403 33404 chr1 957730 957730 1 + G A SKCM 957724 + 957704 957744 41 ACTGGGGACACCAGGATCTTCTTTGTGAACCCTGCACCCCC ACTGGGGACACCAGGATCTTCTTTGTAAACCCTGCACCCCC < 41bp 1 0.178606818738776 1 0.104348450899124 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957724 chr1:957730 synonymous SNV . 0 27 hm5C_associated_SNPs_33522 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33404 DeepMRMD:1;iRNA_m5C:0.999536712157815 33405 chr1 957730 957730 1 + G A SKCM 957744 + 957724 957764 41 CTTTGTGAACCCTGCACCCCCATACCTGTGGCCAGCCCACA CTTTGTAAACCCTGCACCCCCATACCTGTGGCCAGCCCACA < 41bp 1 0.0462064568130151 1 0.140331208705902 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957744 chr1:957730 synonymous SNV . 0 7 hm5C_associated_SNPs_33523 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643307132 1 0.999536713385736 hm5C_site_33405 DeepMRMD:1;iRNA_m5C:0.999536713385736 33406 chr17 7752246 7752246 1 + G A SKCM 7752242 + 7752222 7752262 41 TACCTCAGGCGGGCCCTGGGCCCGGGAGCGCAGGGCGGGCG TACCTCAGGCGGGCCCTGGGCCCGAGAGCGCAGGGCGGGCG < 41bp 1 0.669710994241969 1 0.159061372280121 experiment 0.660578011516062 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7752242 chr17:7752246 synonymous SNV . 0 25 hm5C_associated_SNPs_33524 0 0 1 0 0 Cytosol 1 0.500231643901959 1 0.999536712196082 hm5C_site_33406 DeepMRMD:1;iRNA_m5C:0.999536712196082 33407 chr17 7752246 7752246 1 + G A SKCM 7752243 + 7752223 7752263 41 ACCTCAGGCGGGCCCTGGGCCCGGGAGCGCAGGGCGGGCGA ACCTCAGGCGGGCCCTGGGCCCGAGAGCGCAGGGCGGGCGA < 41bp 1 0.401866842669195 1 0.370658218860626 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7752243 chr17:7752246 synonymous SNV . 0 24 hm5C_associated_SNPs_33525 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33407 DeepMRMD:1;iRNA_m5C:0.999536712157815 33408 chr11 20066904 20066904 1 + G A SKCM 20066902 + 20066882 20066922 41 TACCGGAGTTTGCCGAGGCCCAGTAAGTCCAACAGCCGGAA TACCGGAGTTTGCCGAGGCCCAATAAGTCCAACAGCCGGAA < 41bp 1 0.269215072291596 1 0.256852090358734 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20066902 chr11:20066904 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_33526 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33408 DeepMRMD:1;iRNA_m5C:0.999536712157815 33409 chr1 109772144 109772144 1 + C T SKCM 109772124 + 109772104 109772144 41 GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCT < 41bp 1 0.552267506945526 1 0.836808681488037 experiment 0.895464986108949 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772124 chr1:109772144 stopgain 0.959 1 41 hm5C_associated_SNPs_33527 0 0 1 0 1 Ribosome 1 0.500231643917533 0.326382637023926 0.999536712164933 hm5C_site_33409 DeepMRMD:0.326382637023926;iRNA_m5C:0.999536712164933 33410 chr1 109772144 109772144 1 + C T SKCM 109772129 + 109772109 109772149 41 GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGAG GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCTGAGAG < 41bp 1 0.526282068638779 1 0.374760150909424 experiment 0.947435862722441 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772129 chr1:109772144 stopgain 0.959 1 36 hm5C_associated_SNPs_33528 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33410 DeepMRMD:1;iRNA_m5C:0.999536712157815 33411 chr1 109772143 109772143 1 + C T SKCM 109772124 + 109772104 109772144 41 GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTTC < 41bp 1 0.607867479961376 1 0.782293200492859 experiment 0.784265040077248 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772124 chr1:109772143 synonymous SNV . 0 40 hm5C_associated_SNPs_33529 0 0 1 0 1 Ribosome 1 0.500231651956187 0.435413599014282 0.999536696087626 hm5C_site_33411 DeepMRMD:0.435413599014282;iRNA_m5C:0.999536696087626 33412 chr1 109772143 109772143 1 + C T SKCM 109772129 + 109772109 109772149 41 GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGAG GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTTCGAGAG < 41bp 1 0.579760372883839 1 0.327895641326904 experiment 0.840479254232322 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772129 chr1:109772143 synonymous SNV . 0 35 hm5C_associated_SNPs_33530 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33412 DeepMRMD:1;iRNA_m5C:0.999536712157815 33413 chr17 7402801 7402801 1 + C T SKCM 7402808 + 7402788 7402828 41 AGAGAGACGTCTTCCTGGAGCGGGTGTGTGGTCCAAATGGA AGAGAGACGTCTTTCTGGAGCGGGTGTGTGGTCCAAATGGA < 41bp 1 0.548256963623767 1 0.54496693611145 experiment 0.903486072752467 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7402808 chr17:7402801 synonymous SNV . 0 14 hm5C_associated_SNPs_33531 0 0 0 0 1 Nucleus 1 0.50023164446552 0.9100661277771 0.999536711068961 hm5C_site_33413 DeepMRMD:0.9100661277771;iRNA_m5C:0.999536711068961 33414 chr1 207510105 207510105 1 + A G SKCM 207510119 + 207510099 207510139 41 AACTACAGAAGTCTCACCAACTTCTCAGAAAACCACCACAA AACTACGGAAGTCTCACCAACTTCTCAGAAAACCACCACAA < 41bp 1 0.306951407532421 1 0.809977650642395 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207510119 chr1:207510105 synonymous SNV . 0 7 hm5C_associated_SNPs_33532 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.38004469871521 0.999536712157815 hm5C_site_33414 DeepMRMD:0.38004469871521;iRNA_m5C:0.999536712157815 33415 chr16 30939897 30939897 1 + C T SKCM 30939906 + 30939886 30939926 41 GGTTCTGAATCCGAGCCAGGCTTTCTCATCCTGCCACCCTG GGTTCTGAATCTGAGCCAGGCTTTCTCATCCTGCCACCCTG < 41bp 1 0.0568085114802587 1 0.0305556952953339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30939906 chr16:30939897 nonsynonymous SNV 0.998 1 12 hm5C_associated_SNPs_33534 0 0 1 0 2 chromatin 1 0.50023164482916 1 0.99953671034168 hm5C_site_33415 DeepMRMD:1;iRNA_m5C:0.99953671034168 33416 chr13 52604978 52604978 1 + C T SKCM 52604967 + 52604947 52604987 41 TGAGAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAG TGAGAAGCGCAACATCCACGCAGCAGCTCATTAGGTACAAG < 41bp 1 0.626229487672807 1 0.275622367858887 experiment 0.747541024654385 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604967 chr13:52604978 stopgain 0.301 1 32 hm5C_associated_SNPs_33535 0 0 1 1 0 nucleoplasm 1 0.500231603864676 1 0.999536792270648 hm5C_site_33416 DeepMRMD:1;iRNA_m5C:0.999536792270648 33417 chr13 52604978 52604978 1 + C T SKCM 52604970 + 52604950 52604990 41 GAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAGTGC GAAGCGCAACATCCACGCAGCAGCTCATTAGGTACAAGTGC < 41bp 1 0.155766704723452 1 0.064655989408493 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604970 chr13:52604978 stopgain 0.301 1 29 hm5C_associated_SNPs_33536 0 0 1 1 0 nucleoplasm 1 0.50023264031793 1 0.999534719364139 hm5C_site_33417 DeepMRMD:1;iRNA_m5C:0.999534719364139 33418 chr15 41854889 41854889 1 + C T SKCM 41854884 + 41854864 41854904 41 AACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTT AACTACGAAGATCGGGGGACCCGCTTCCTCTCCATCTGTTT < 41bp 1 0.0759334975564891 1 0.0643606185913086 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854884 chr15:41854889 nonsynonymous SNV 0.994 0 26 hm5C_associated_SNPs_33537 0 0 0 0 1 Ribosome 1 0.500231893729655 1 0.999536212540691 hm5C_site_33418 DeepMRMD:1;iRNA_m5C:0.999536212540691 33419 chr15 41854889 41854889 1 + C T SKCM 41854885 + 41854865 41854905 41 ACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTTT ACTACGAAGATCGGGGGACCCGCTTCCTCTCCATCTGTTTT < 41bp 1 0.210447755992063 1 0.0775572955608368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854885 chr15:41854889 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_33538 0 0 0 0 1 Ribosome 1 0.50023164392312 1 0.999536712153759 hm5C_site_33419 DeepMRMD:1;iRNA_m5C:0.999536712153759 33420 chr16 69951744 69951744 1 + C T SKCM 69951752 + 69951732 69951772 41 GCGGAATCAGCTCCAGGGGGCCATGCAGCACTTCAGCCAAA GCGGAATCAGCTTCAGGGGGCCATGCAGCACTTCAGCCAAA < 41bp 1 0.0542983515609979 1 0.0638072192668915 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control WWP2 ENSG00000198373 CDS Human protein_coding chr16:69951752 chr16:69951744 synonymous SNV . 0 13 hm5C_associated_SNPs_33539 0 0 1 0 1 Ribosome 1 0.500231691504718 1 0.999536616990565 hm5C_site_33420 DeepMRMD:1;iRNA_m5C:0.999536616990565 33421 chr7 142459672 142459672 1 + G A SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGAGAA < 41bp 1 0.681450045596483 1 0.137529075145721 experiment 0.637099908807034 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459672 nonsynonymous SNV 0.081 4 38 hm5C_associated_SNPs_33540 0 0 0 0 1 Cytosol 1 0.50023164407244 1 0.99953671185512 hm5C_site_33421 DeepMRMD:1;iRNA_m5C:0.99953671185512 33422 chr7 142459672 142459672 1 + G A SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTGGAGGAGAATGAGCAGTT < 41bp 1 0.516474075277299 1 0.337943017482758 experiment 0.967051849445403 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459672 nonsynonymous SNV 0.081 4 29 hm5C_associated_SNPs_33542 0 0 0 0 1 Cytosol 1 0.500231478689261 1 0.999537042621478 hm5C_site_33422 DeepMRMD:1;iRNA_m5C:0.999537042621478 33423 chr7 142459672 142459672 1 + G A SKCM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGAGAATGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.469578916152705 1 0.193081110715866 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459672 nonsynonymous SNV 0.081 4 13 hm5C_associated_SNPs_33543 0 0 0 0 1 Cytosol 1 0.500231325318448 1 0.999537349363103 hm5C_site_33423 DeepMRMD:1;iRNA_m5C:0.999537349363103 33424 chr7 142459672 142459672 1 + G A SKCM 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGAGAATGAGCAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.634180048624026 1 0.0486206412315369 experiment 0.731639902751947 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459672 nonsynonymous SNV 0.081 4 8 hm5C_associated_SNPs_33544 0 0 0 0 1 Cytosol 1 0.500231643902014 1 0.999536712195972 hm5C_site_33424 DeepMRMD:1;iRNA_m5C:0.999536712195972 33425 chr7 142459672 142459672 1 + G A SKCM 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGAGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG < 41bp 1 0.638720786378921 1 0.25257283449173 experiment 0.722558427242158 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459672 nonsynonymous SNV 0.081 4 5 hm5C_associated_SNPs_33545 0 0 0 0 1 Cytosol 1 0.500234297334306 1 0.999531405331388 hm5C_site_33425 DeepMRMD:1;iRNA_m5C:0.999531405331388 33426 chr5 73989524 73989524 1 + T A SKCM 73989526 + 73989506 73989546 41 ACAGAGTTTGGGGAGCATTACGAGGTAAGTTCCATGCAGTT ACAGAGTTTGGGGAGCATAACGAGGTAAGTTCCATGCAGTT < 41bp 1 0.683207673845458 1 0.84485936164856 experiment 0.633584652309084 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEXB ENSG00000049860 CDS Human protein_coding chr5:73989526 chr5:73989524 stopgain 0.998 1 19 hm5C_associated_SNPs_33546 0 0 1 1 2 Cytosol 1 0.500231643921092 0.31028127670288 0.999536712157815 hm5C_site_33426 DeepMRMD:0.31028127670288;iRNA_m5C:0.999536712157815 33427 chr14 101419726 101419726 1 + G A SKCM 101419734 + 101419714 101419754 41 TGAGTCATGGACGATGAATACTACGTGTCTGAAACTCTGAG TGAGTCATGGACAATGAATACTACGTGTCTGAAACTCTGAG < 41bp 1 0.498066233743467 1 0.038143128156662 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419734 chr14:101419726 . . 0 13 hm5C_associated_SNPs_33547 0 0 1 0 0 unknown 1 0.500232089830258 1 0.999535820339484 hm5C_site_33427 DeepMRMD:1;iRNA_m5C:0.999535820339484 33428 chr14 101419726 101419726 1 + G A SKCM 101419742 + 101419722 101419762 41 GGACGATGAATACTACGTGTCTGAAACTCTGAGGTCCAACA GGACAATGAATACTACGTGTCTGAAACTCTGAGGTCCAACA < 41bp 1 0.526201325600877 1 0.0834716558456421 experiment 0.947597348798245 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419742 chr14:101419726 . . 0 5 hm5C_associated_SNPs_33548 0 0 1 0 0 unknown 1 0.500231645913536 1 0.999536708172929 hm5C_site_33428 DeepMRMD:1;iRNA_m5C:0.999536708172929 33429 chr1 65871733 65871733 1 + C T SKCM 65871740 + 65871720 65871760 41 CCCCACTCCTCTCCCCAGAACCGACCCAACTACAACGTGAG CCCCACTCCTCTCTCCAGAACCGACCCAACTACAACGTGAG < 41bp 1 0.0565673859599404 1 0.125706195831299 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871740 chr1:65871733 nonsynonymous SNV 0.918 2 14 hm5C_associated_SNPs_33550 0 0 0 0 1 Cytosol 1 0.500231643921088 1 0.999536712157823 hm5C_site_33429 DeepMRMD:1;iRNA_m5C:0.999536712157823 33430 chr9 133355822 133355822 1 + G A SKCM 133355811 + 133355791 133355831 41 CGTATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC CGTATTGACATCGTGGAGAACCGCTTCATTGAAATGAAGTC < 41bp 1 0.117050316328893 1 0.0636813640594482 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355811 chr9:133355822 nonsynonymous SNV 0.955 4 32 hm5C_associated_SNPs_33551 0 0 0 0 2 Ribosome 1 0.500231644010614 1 0.999536711978773 hm5C_site_33430 DeepMRMD:1;iRNA_m5C:0.999536711978773 33431 chr2 55277310 55277310 1 + C T SKCM 55277299 - 55277279 55277319 41 GAGGAAGAGGAGGACGAGGACGAAGACCTGGAGGAGCTGGA GAGGAAGAGAAGGACGAGGACGAAGACCTGGAGGAGCTGGA < 41bp 1 0.653682575647791 1 0.759371638298035 experiment 0.692634848704418 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RTN4 ENSG00000115310 CDS Human protein_coding chr2:55277299 chr2:55277310 nonsynonymous SNV 0.161 1 10 hm5C_associated_SNPs_33552 0 0 1 0 0 Ribosome 1 0.500231643876401 0.48125672340393 0.999536712247198 hm5C_site_33431 DeepMRMD:0.48125672340393;iRNA_m5C:0.999536712247198 33432 chr1 233514925 233514925 1 + G A SKCM 233514944 + 233514924 233514964 41 TGGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG TAGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG < 41bp 1 0.268650647762082 1 0.0623092949390411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233514944 chr1:233514925 nonsynonymous SNV 0.001 0 2 hm5C_associated_SNPs_33553 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_33432 DeepMRMD:1;iRNA_m5C:0.999536712157815 33433 chr6 31594926 31594926 1 + C T SKCM 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACCCCTACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.3032548355445 1 0.10245481133461 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594926 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_33554 0 0 1 0 1 Ribosome 1 0.50023164393266 1 0.99953671213468 hm5C_site_33433 DeepMRMD:1;iRNA_m5C:0.99953671213468 33434 chr6 31594926 31594926 1 + C T SKCM 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACCCCTACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.270696147187263 1 0.126917362213135 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594926 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_33555 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33434 DeepMRMD:1;iRNA_m5C:0.999536712157815 33435 chr6 31594926 31594926 1 + C T SKCM 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACCCCTACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.338406111014547 1 0.248966634273529 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594926 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_33556 0 0 1 0 1 Ribosome 1 0.50023164402733 1 0.99953671194534 hm5C_site_33435 DeepMRMD:1;iRNA_m5C:0.99953671194534 33436 chr6 31594926 31594926 1 + C T SKCM 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CCCCTACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC < 41bp 1 0.584706888463852 1 0.563100576400757 experiment 0.830586223072296 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594926 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_33557 0 0 1 0 1 Ribosome 1 0.500231643921092 0.873798847198486 0.999536712157815 hm5C_site_33436 DeepMRMD:0.873798847198486;iRNA_m5C:0.999536712157815 33437 chr19 54968019 54968019 1 + C T SKCM 54968028 + 54968008 54968048 41 GAGCTGCAGATCGTGGGCACCTGCCCTGACATCACCAAGCA GAGCTGCAGATTGTGGGCACCTGCCCTGACATCACCAAGCA < 41bp 1 0.263618688287564 1 0.417730629444122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54968028 chr19:54968019 synonymous SNV . 0 12 hm5C_associated_SNPs_33558 0 0 1 0 1 chromatin 1 0.500231641014269 1 0.999536717971462 hm5C_site_33437 DeepMRMD:1;iRNA_m5C:0.999536717971462 33438 chr2 55277311 55277311 1 + C T SKCM 55277299 - 55277279 55277319 41 GAGGAAGAGGAGGACGAGGACGAAGACCTGGAGGAGCTGGA GAGGAAGAAGAGGACGAGGACGAAGACCTGGAGGAGCTGGA < 41bp 1 0.639337936689437 1 0.758288621902466 experiment 0.721324126621127 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RTN4 ENSG00000115310 CDS Human protein_coding chr2:55277299 chr2:55277311 synonymous SNV . 0 9 hm5C_associated_SNPs_33559 0 0 1 0 0 Ribosome 1 0.500231094778115 0.483422756195068 0.999537810443769 hm5C_site_33438 DeepMRMD:0.483422756195068;iRNA_m5C:0.999537810443769 33439 chr10 75548522 75548522 1 + T A SKCM 75548529 + 75548509 75548549 41 ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT ACCCACCAGTGCCAGAGCAGCTACAGCTCCGAATTGCTTTT < 41bp 1 0.58098541590956 1 0.3891341984272 experiment 0.838029168180879 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75548529 chr10:75548522 synonymous SNV . 0 14 hm5C_associated_SNPs_33561 0 0 0 0 2 Cytosol 1 0.500231934569222 1 0.999536130861556 hm5C_site_33439 DeepMRMD:1;iRNA_m5C:0.999536130861556 33440 chr10 75548547 75548547 1 + T A SKCM 75548529 + 75548509 75548549 41 ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTATT < 41bp 1 0.567793112704121 1 0.392419308423996 experiment 0.864413774591757 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75548529 chr10:75548547 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_33562 0 0 1 0 1 Cytosol 1 0.500231644387058 1 0.999536711225885 hm5C_site_33440 DeepMRMD:1;iRNA_m5C:0.999536711225885 33441 chr8 48874103 48874103 1 + C T SKCM 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATCTCTCTCTCAGAGACGTAGAGGCGA < 41bp 1 0.205658467314601 1 0.199394941329956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874103 nonsynonymous SNV 0.009 2 20 hm5C_associated_SNPs_33563 0 0 1 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33441 DeepMRMD:1;iRNA_m5C:0.999536712157815 33442 chr3 50131285 50131285 1 + C T SKCM 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTTCCAT < 41bp 1 0.411377728624937 1 0.257786899805069 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131285 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_33564 0 0 1 0 2 Cytosol 1 0.500231643900326 1 0.999536712199349 hm5C_site_33442 DeepMRMD:1;iRNA_m5C:0.999536712199349 33443 chr12 53516968 53516968 1 + C T SKCM 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCCTGGGGTTCTTCTATCTCGTCATGCTGAT < 41bp 1 0.124992421990677 1 0.0548134744167328 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516968 nonsynonymous SNV 0.994 4 29 hm5C_associated_SNPs_33565 0 0 0 0 1 cytosol 1 0.500231643921108 1 0.999536712157784 hm5C_site_33443 DeepMRMD:1;iRNA_m5C:0.999536712157784 33444 chr11 985546 985546 1 + T G SKCM 985545 + 985525 985565 41 CCAACGCGAAGAATGCCGTGCTCTTCGAGGCCATCAGCTTA CCAACGCGAAGAATGCCGTGCGCTTCGAGGCCATCAGCTTA < 41bp 1 0.0667777429914442 1 0.0536851584911346 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:985545 chr11:985546 nonsynonymous SNV 0.968 4 22 hm5C_associated_SNPs_33566 0 0 1 0 1 Nucleus 1 0.50023164392225 1 0.999536712155501 hm5C_site_33444 DeepMRMD:1;iRNA_m5C:0.999536712155501 33445 chr10 51582882 51582882 1 + A G SKCM 51582890 + 51582870 51582910 41 AGCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTA AGCTCCTTACATGCCCAGCACCGACCCCCAGGACTGGCTTA < 41bp 1 0.095758258418885 1 0.0544359385967255 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582890 chr10:51582882 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_33567 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33445 DeepMRMD:1;iRNA_m5C:0.999536712157815 33446 chr10 51582882 51582882 1 + A G SKCM 51582891 + 51582871 51582911 41 GCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTAC GCTCCTTACATGCCCAGCACCGACCCCCAGGACTGGCTTAC < 41bp 1 0.262917586752687 1 0.0495795011520386 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582891 chr10:51582882 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_33568 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33446 DeepMRMD:1;iRNA_m5C:0.999536712157815 33447 chr10 51582882 51582882 1 + A G SKCM 51582895 + 51582875 51582915 41 CTTACATACCCAGCACCGACCCCCAGGACTGGCTTACCCAA CTTACATGCCCAGCACCGACCCCCAGGACTGGCTTACCCAA < 41bp 1 0.611810280051286 1 0.309579849243164 experiment 0.776379439897428 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582895 chr10:51582882 nonsynonymous SNV . 0 8 hm5C_associated_SNPs_33569 0 0 1 0 2 Cytosol 1 0.500231643921099 1 0.999536712157803 hm5C_site_33447 DeepMRMD:1;iRNA_m5C:0.999536712157803 33448 chr4 2943344 2943344 1 + G A SKCM 2943341 - 2943321 2943361 41 AAGCCCTCCTCACGGATCACCTGGCGGACTGCAGCCACCCG AAGCCCTCCTCACGGATTACCTGGCGGACTGCAGCCACCCG < 41bp 1 0.670202665141039 1 0.663257122039795 experiment 0.659594669717923 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOP14 ENSG00000087269 CDS Human protein_coding chr4:2943341 chr4:2943344 nonsynonymous SNV 0.009 3 18 hm5C_associated_SNPs_33570 0 0 1 0 1 Nucleus 1 0.500231681307821 0.67348575592041 0.999536637384357 hm5C_site_33448 DeepMRMD:0.67348575592041;iRNA_m5C:0.999536637384357 33449 chr19 18729265 18729265 1 + C T SKCM 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ATCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.218598447732484 1 0.220620095729828 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729265 nonsynonymous SNV 0.736 4 2 hm5C_associated_SNPs_33571 0 0 1 0 2 Cytosol 1 0.500231643921098 1 0.999536712157804 hm5C_site_33449 DeepMRMD:1;iRNA_m5C:0.999536712157804 33450 chr16 70562809 70562809 1 + G T SKCM 70562823 + 70562803 70562843 41 CCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC CCCGTGTGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC < 41bp 1 0.264446653013242 1 0.0608790218830109 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70562823 chr16:70562809 nonsynonymous SNV 0.999 4 7 hm5C_associated_SNPs_33572 0 0 1 0 1 Cytosol 1 0.500231644526276 1 0.999536710947448 hm5C_site_33450 DeepMRMD:1;iRNA_m5C:0.999536710947448 33451 chr6 168352612 168352612 1 + C T SKCM 168352592 + 168352572 168352612 41 CCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGAC CCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGAT < 41bp 1 0.49553772739651 1 0.552926898002625 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352592 chr6:168352612 synonymous SNV . 0 41 hm5C_associated_SNPs_33573 0 0 1 0 0 unknown 1 0.500231643921092 0.89414620399475 0.999536712157815 hm5C_site_33451 DeepMRMD:0.89414620399475;iRNA_m5C:0.999536712157815 33452 chr6 168352612 168352612 1 + C T SKCM 168352593 + 168352573 168352613 41 CTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGACG CTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGATG < 41bp 1 0.0836379977509475 1 0.21358734369278 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352593 chr6:168352612 synonymous SNV . 0 40 hm5C_associated_SNPs_33574 0 0 1 0 0 unknown 1 0.500231641337252 1 0.999536717325495 hm5C_site_33452 DeepMRMD:1;iRNA_m5C:0.999536717325495 33453 chr16 89759817 89759817 1 + C T SKCM 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCGGCTTGGCCCGGGCCTATGGTGTCCCAGTA < 41bp 1 0.625968113520139 1 0.812958896160126 experiment 0.748063772959722 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759817 synonymous SNV . 0 15 hm5C_associated_SNPs_33575 0 0 1 0 2 chromatin 1 0.500231643921092 0.374082207679748 0.999536712157815 hm5C_site_33453 DeepMRMD:0.374082207679748;iRNA_m5C:0.999536712157815 33454 chr9 130551705 130551705 1 + C T SKCM 130551725 + 130551705 130551745 41 CATGTTCGAGTACTTGGCACCACCGCGCCGGAAGGGCAGCC TATGTTCGAGTACTTGGCACCACCGCGCCGGAAGGGCAGCC < 41bp 1 0.537344056472242 1 0.398193329572678 experiment 0.925311887055516 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK9 ENSG00000136807 CDS Human protein_coding chr9:130551725 chr9:130551705 synonymous SNV . 0 1 hm5C_associated_SNPs_33576 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_33454 DeepMRMD:1;iRNA_m5C:0.999536712157815 33455 chr10 134016275 134016275 1 + C T SKCM 134016266 + 134016246 134016286 41 TTTGTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC TTTGTCACCCCGGGGGCGGGCCGCTTCGTTCCTCGGAAAAC < 41bp 1 0.182188463011683 1 0.207413524389267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016266 chr10:134016275 synonymous SNV . 0 30 hm5C_associated_SNPs_33577 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33455 DeepMRMD:1;iRNA_m5C:0.999536712157815 33456 chr7 142460762 142460762 1 + G A SKCM 142460745 + 142460725 142460765 41 TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGT TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGAAGT < 41bp 1 0.418727989625707 1 0.0803528726100922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460745 chr7:142460762 nonsynonymous SNV 0.015 5 38 hm5C_associated_SNPs_33578 0 0 0 0 0 Cytosol 1 0.500231643921074 1 0.999536712157851 hm5C_site_33456 DeepMRMD:1;iRNA_m5C:0.999536712157851 33457 chr7 142460762 142460762 1 + G A SKCM 142460757 + 142460737 142460777 41 GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG GTGGTCTGCAATGGACAGCTCCAAGAAGTTGTCTCCTGGGG < 41bp 1 0.237914706135058 1 0.321414649486542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460757 chr7:142460762 nonsynonymous SNV 0.015 5 26 hm5C_associated_SNPs_33579 0 0 0 0 0 Cytosol 1 0.500231643926761 1 0.999536712146477 hm5C_site_33457 DeepMRMD:1;iRNA_m5C:0.999536712146477 33458 chr7 142460762 142460762 1 + G A SKCM 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTCTGCAATGGACAGCTCCAAGAAGTTGTCTCCTGGGGT < 41bp 1 0.580585470121739 1 0.423307120800018 experiment 0.838829059756522 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460762 nonsynonymous SNV 0.015 5 25 hm5C_associated_SNPs_33580 0 0 0 0 0 Cytosol 1 0.500231641892295 1 0.99953671621541 hm5C_site_33458 DeepMRMD:1;iRNA_m5C:0.99953671621541 33459 chr7 142460762 142460762 1 + G A SKCM 142460769 + 142460749 142460789 41 GGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC GGACAGCTCCAAGAAGTTGTCTCCTGGGGTGATGGCTGTGC < 41bp 1 0.552450377698889 1 0.763285040855408 experiment 0.895099244602221 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460769 chr7:142460762 nonsynonymous SNV 0.015 5 14 hm5C_associated_SNPs_33581 0 0 0 0 0 Cytosol 1 0.500231643921092 0.473429918289184 0.999536712157815 hm5C_site_33459 DeepMRMD:0.473429918289184;iRNA_m5C:0.999536712157815 33460 chr7 142460762 142460762 1 + G A SKCM 142460771 + 142460751 142460791 41 ACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC ACAGCTCCAAGAAGTTGTCTCCTGGGGTGATGGCTGTGCCC < 41bp 1 0.292091740058505 1 0.771726727485657 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460771 chr7:142460762 nonsynonymous SNV 0.015 5 12 hm5C_associated_SNPs_33582 0 0 0 0 0 Cytosol 1 0.500231643888114 0.456546545028686 0.999536712223771 hm5C_site_33460 DeepMRMD:0.456546545028686;iRNA_m5C:0.999536712223771 33461 chrX 100668153 100668153 1 + G A SKCM 100668159 + 100668139 100668179 41 GTGGTGGCGCTTATGGTAGCCAAATGATGGGAGGGATGGGC GTGGTGGCGCTTATAGTAGCCAAATGATGGGAGGGATGGGC < 41bp 1 0.525448283858433 1 0.766635596752167 experiment 0.949103432283134 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HNRNPH2 ENSG00000126945 CDS Human protein_coding chrX:100668159 chrX:100668153 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_33584 0 0 1 0 0 Cytosol 1 0.500231643921092 0.466728806495666 0.999536712157815 hm5C_site_33461 DeepMRMD:0.466728806495666;iRNA_m5C:0.999536712157815 33462 chr20 47859212 47859212 1 + G A SKCM 47859198 + 47859178 47859218 41 ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCGAGCTGG ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCAAGCTGG < 41bp 1 0.181571018321673 1 0.192166417837143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX27 ENSG00000124228 CDS Human protein_coding chr20:47859198 chr20:47859212 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_33585 0 0 1 0 2 chromatin 1 0.500231643993253 1 0.999536712013495 hm5C_site_33462 DeepMRMD:1;iRNA_m5C:0.999536712013495 33463 chr19 40883999 40883999 1 + C T SKCM 40884016 + 40883996 40884036 41 TTTCCTGAGGGACTGGGACTCCCCTTACAGCCATGACCTTG TTTTCTGAGGGACTGGGACTCCCCTTACAGCCATGACCTTG < 41bp 1 0.451065087681769 1 0.149983733892441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40884016 chr19:40883999 synonymous SNV . 0 4 hm5C_associated_SNPs_33588 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921154 1 0.999536712157692 hm5C_site_33463 DeepMRMD:1;iRNA_m5C:0.999536712157692 33464 chr19 40883999 40883999 1 + C T SKCM 40884018 + 40883998 40884038 41 TCCTGAGGGACTGGGACTCCCCTTACAGCCATGACCTTGAC TTCTGAGGGACTGGGACTCCCCTTACAGCCATGACCTTGAC < 41bp 1 0.265401483866691 1 0.0774160027503967 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40884018 chr19:40883999 synonymous SNV . 0 2 hm5C_associated_SNPs_33589 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_33464 DeepMRMD:1;iRNA_m5C:0.999536712157815 33465 chr6 7583117 7583117 1 + G A SKCM 7583125 + 7583105 7583145 41 ATATTCCCGCAAGGAGGAGGCTATTAGGAAGATAGAATCGG ATATTCCCGCAAAGAGGAGGCTATTAGGAAGATAGAATCGG < 41bp 1 0.0526942951517241 1 0.0655295550823212 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7583125 chr6:7583117 synonymous SNV . 0 13 hm5C_associated_SNPs_33590 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33465 DeepMRMD:1;iRNA_m5C:0.999536712157815 33466 chr19 3525944 3525944 1 + C T SKCM 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCATCTCCTCCAGAGCCGGAGCCAACTGGAG < 41bp 1 0.418772783301796 1 0.706745445728302 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525944 nonsynonymous SNV 0.843 4 16 hm5C_associated_SNPs_33591 0 0 1 0 2 Ribosome 1 0.500231643921092 0.586509108543396 0.999536712157815 hm5C_site_33466 DeepMRMD:0.586509108543396;iRNA_m5C:0.999536712157815 33467 chr1 228403514 228403514 1 + C T SKCM 228403511 + 228403491 228403531 41 GCCAACGGCATTGAGAGCAGCATCCGGATGGAGGTCCGGGG GCCAACGGCATTGAGAGCAGCATTCGGATGGAGGTCCGGGG < 41bp 1 0.0296663662804089 1 0.067886620759964 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228403511 chr1:228403514 synonymous SNV . 0 24 hm5C_associated_SNPs_33592 0 0 0 0 1 Ribosome 1 0.500231643924054 1 0.999536712151891 hm5C_site_33467 DeepMRMD:1;iRNA_m5C:0.999536712151891 33468 chr19 49967982 49967982 1 + C T SKCM 49967998 + 49967978 49968018 41 TGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA TGTTTCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA < 41bp 1 0.519905912193112 1 0.473666131496429 experiment 0.960188175613776 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967998 chr19:49967982 nonsynonymous SNV 0.048 0 5 hm5C_associated_SNPs_33593 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33468 DeepMRMD:1;iRNA_m5C:0.999536712157815 33469 chr17 76399761 76399761 1 + T G SKCM 76399746 + 76399726 76399766 41 ATGCTGCATGCCCAGACCTTCCACAGCAACTCTCTTTTGAC ATGCTGCATGCCCAGACCTTCCACAGCAACTCTCTGTTGAC < 41bp 1 0.374362555959542 1 0.0671044588088989 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PGS1 ENSG00000087157 CDS Human protein_coding chr17:76399746 chr17:76399761 synonymous SNV . 0 36 hm5C_associated_SNPs_33594 0 0 1 0 0 chromatin 1 0.500231703470956 1 0.999536593058088 hm5C_site_33469 DeepMRMD:1;iRNA_m5C:0.999536593058088 33470 chr17 30806301 30806301 1 + T C SKCM 30806305 + 30806285 30806325 41 GGGCAGAGCTCCGGGATGACCCAATCATCAGCACACACTTG GGGCAGAGCTCCGGGACGACCCAATCATCAGCACACACTTG < 41bp 1 0.172605349733022 1 0.249768614768982 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30806305 chr17:30806301 synonymous SNV . 0 17 hm5C_associated_SNPs_33595 0 0 1 0 2 Ribosome 1 0.500231643737863 1 0.999536712524274 hm5C_site_33470 DeepMRMD:1;iRNA_m5C:0.999536712524274 33471 chr1 10689598 10689598 1 + C T SKCM 10689614 + 10689594 10689634 41 GTTCCCTCCATCCCCATCAGCCCCGAAGATCCCCTCCTGGC GTTCTCTCCATCCCCATCAGCCCCGAAGATCCCCTCCTGGC < 41bp 1 0.300504751328477 1 0.0740545094013214 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PEX14 ENSG00000142655 CDS Human protein_coding chr1:10689614 chr1:10689598 nonsynonymous SNV 0.277 2 5 hm5C_associated_SNPs_33596 0 0 1 0 1 Ribosome 1 0.50023164392109 1 0.999536712157819 hm5C_site_33471 DeepMRMD:1;iRNA_m5C:0.999536712157819 33472 chr10 43604510 43604510 1 + G A SKCM 43604501 + 43604481 43604521 41 CTGGTTCTCAACCGGAACCTCTCCATCTCGGAGAACCGCAC CTGGTTCTCAACCGGAACCTCTCCATCTCAGAGAACCGCAC < 41bp 1 0.655955636328146 1 0.974481880664825 experiment 0.688088727343707 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RET ENSG00000165731 CDS Human protein_coding chr10:43604501 chr10:43604510 synonymous SNV . 0 30 hm5C_associated_SNPs_33597 3 0 1 0 1 Cytosol 1 0.500231643905503 0.05103623867035 0.999536712188993 hm5C_site_33472 DeepMRMD:0.05103623867035;iRNA_m5C:0.999536712188993 Multiple endocrine neoplasia, type 2 Multiple endocrine neoplasia, type 2 33473 chr1 154207165 154207165 1 + G A SKCM 154207147 + 154207127 154207167 41 ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGGGA ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGAGA < 41bp 1 0.398677606804189 1 0.358623564243317 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207147 chr1:154207165 synonymous SNV . 0 39 hm5C_associated_SNPs_33598 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33473 DeepMRMD:1;iRNA_m5C:0.999536712157815 33474 chr1 154207166 154207166 1 + G A SKCM 154207147 + 154207127 154207167 41 ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGGGA ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGGAA < 41bp 1 0.442105497360521 1 0.39484965801239 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207147 chr1:154207166 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_33599 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33474 DeepMRMD:1;iRNA_m5C:0.999536712157815 33475 chr18 13645291 13645291 1 + C T SKCM 13645293 + 13645273 13645313 41 CCACCTCCTTACCAGGGGCCCTGCACCCTGCAGCTCCGGGA CCACCTCCTTACCAGGGGTCCTGCACCCTGCAGCTCCGGGA < 41bp 1 0.488067967464295 1 0.095036506652832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLRAD4 ENSG00000168675 CDS Human protein_coding chr18:13645293 chr18:13645291 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_33600 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_33475 DeepMRMD:1;iRNA_m5C:0.999536712157814 33476 chr21 45483585 45483585 1 + C A SKCM 45483598 + 45483578 45483618 41 TGCTGCTCTTCCTGCAGAGGCCGTGGGAGGTGGCCCAGCGC TGCTGCTATTCCTGCAGAGGCCGTGGGAGGTGGCCCAGCGC < 41bp 1 0.386732720786428 1 0.456271260976791 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45483598 chr21:45483585 synonymous SNV . 0 8 hm5C_associated_SNPs_33601 0 0 1 0 1 Cytosol 1 0.500231643921095 1 0.999536712157811 hm5C_site_33476 DeepMRMD:1;iRNA_m5C:0.999536712157811 33477 chr17 40695668 40695668 1 + C T SKCM 40695658 + 40695638 40695678 41 GGCCTGGCGGCTGCTGCTCACATCTGCTCCCTCCCTGGCCA GGCCTGGCGGCTGCTGCTCACATCTGCTCCTTCCCTGGCCA < 41bp 1 0.275893757729722 1 0.258825689554214 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAGLU ENSG00000108784 CDS Human protein_coding chr17:40695658 chr17:40695668 synonymous SNV . 0 31 hm5C_associated_SNPs_33602 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643912684 1 0.999536712174632 hm5C_site_33477 DeepMRMD:1;iRNA_m5C:0.999536712174632 33478 chr17 40695668 40695668 1 + C T SKCM 40695685 + 40695665 40695705 41 TCCCTCCCTGGCCACCAGCCCCGCCTTCCGCTACGACCTGC TCCTTCCCTGGCCACCAGCCCCGCCTTCCGCTACGACCTGC < 41bp 1 0.261184198846337 1 0.0626807510852814 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NAGLU ENSG00000108784 CDS Human protein_coding chr17:40695685 chr17:40695668 synonymous SNV . 0 4 hm5C_associated_SNPs_33603 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921103 1 0.999536712157795 hm5C_site_33478 DeepMRMD:1;iRNA_m5C:0.999536712157795 33479 chr19 24010418 24010418 1 + C T SKCM 24010423 + 24010403 24010443 41 TGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCC TGTGTAACACAGATTTTCCTCTGCGCTATGTGGACATTGCC < 41bp 1 0.555513636120186 1 0.0888687372207642 experiment 0.888972727759628 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010423 chr19:24010418 nonsynonymous SNV 0.997 2 16 hm5C_associated_SNPs_33604 0 0 0 0 0 Cytosol 1 0.50023171995551 1 0.99953656008898 hm5C_site_33479 DeepMRMD:1;iRNA_m5C:0.99953656008898 33480 chr21 45483584 45483584 1 + T C SKCM 45483598 + 45483578 45483618 41 TGCTGCTCTTCCTGCAGAGGCCGTGGGAGGTGGCCCAGCGC TGCTGCCCTTCCTGCAGAGGCCGTGGGAGGTGGCCCAGCGC < 41bp 1 0.383756289076323 1 0.459765732288361 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45483598 chr21:45483584 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_33605 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33480 DeepMRMD:1;iRNA_m5C:0.999536712157815 33481 chr2 233128139 233128139 1 + C T SKCM 233128132 + 233128112 233128152 41 CAGCAGCGCTTTGTGGACGGCGCACTTCGTTTGGATCAGGT CAGCAGCGCTTTGTGGACGGCGCACTTTGTTTGGATCAGGT < 41bp 1 0.121075433220633 1 0.386913746595383 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DIS3L2 ENSG00000144535 CDS Human protein_coding chr2:233128132 chr2:233128139 nonsynonymous SNV 0.936 4 28 hm5C_associated_SNPs_33606 0 0 0 0 1 chromatin 1 0.500231643921119 1 0.999536712157763 hm5C_site_33481 DeepMRMD:1;iRNA_m5C:0.999536712157763 33482 chr7 98609786 98609786 1 + C T SKCM 98609794 + 98609774 98609814 41 TCTCTCGGCCGCCGGGCAGCCAGAGAACATGGACAGCCAGC TCTCTCGGCCGCTGGGCAGCCAGAGAACATGGACAGCCAGC < 41bp 1 0.317580618634312 1 0.915179252624512 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98609794 chr7:98609786 synonymous SNV . 0 13 hm5C_associated_SNPs_33607 0 0 1 0 1 Nucleus 1 0.500299616723121 0.169641494750976 0.999400766553758 hm5C_site_33482 DeepMRMD:0.169641494750976;iRNA_m5C:0.999400766553758 33483 chr5 140731312 140731312 1 + G T SKCM 140731316 + 140731296 140731336 41 GTGACCTGGAGCCGCGGGAGCTGTTGTCCTACGTGTCCGTG GTGACCTGGAGCCGCGTGAGCTGTTGTCCTACGTGTCCGTG < 41bp 1 0.283916590390629 1 0.0370877981185913 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHGB1 ENSG00000254221 CDS Human protein_coding chr5:140731316 chr5:140731312 synonymous SNV . 0 17 hm5C_associated_SNPs_33608 0 0 1 0 0 exosome 1 0.500231645929071 1 0.999536708141858 hm5C_site_33483 DeepMRMD:1;iRNA_m5C:0.999536708141858 33484 chr11 118495748 118495748 1 + C T SKCM 118495741 + 118495721 118495761 41 AGCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTA AGCATGATTCCAGCAGGGGGCCGAGCCTCTGGGCCCCCCTA < 41bp 1 0.249148766728693 1 0.491896897554398 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495741 chr11:118495748 nonsynonymous SNV 0.976 0 28 hm5C_associated_SNPs_33609 0 0 0 0 2 Cytosol 1 0.500231643632043 1 0.999536712735914 hm5C_site_33484 DeepMRMD:1;iRNA_m5C:0.999536712735914 33485 chr11 118495748 118495748 1 + C T SKCM 118495742 + 118495722 118495762 41 GCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTAC GCATGATTCCAGCAGGGGGCCGAGCCTCTGGGCCCCCCTAC < 41bp 1 0.491573421020295 1 0.831153035163879 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495742 chr11:118495748 nonsynonymous SNV 0.976 0 27 hm5C_associated_SNPs_33610 0 0 0 0 2 Cytosol 1 0.500231643921092 0.337693929672242 0.999536712157815 hm5C_site_33485 DeepMRMD:0.337693929672242;iRNA_m5C:0.999536712157815 33486 chr11 118495748 118495748 1 + C T SKCM 118495754 + 118495734 118495774 41 CAGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCT CAGGGGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCT < 41bp 1 0.0851576664626709 1 0.0263330638408661 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495754 chr11:118495748 nonsynonymous SNV 0.976 0 15 hm5C_associated_SNPs_33611 0 0 0 0 2 Cytosol 1 0.500231643920859 1 0.999536712158283 hm5C_site_33486 DeepMRMD:1;iRNA_m5C:0.999536712158283 33487 chr11 118495748 118495748 1 + C T SKCM 118495755 + 118495735 118495775 41 AGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTG AGGGGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCTG < 41bp 1 0.115945118605792 1 0.0247358977794647 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495755 chr11:118495748 nonsynonymous SNV 0.976 0 14 hm5C_associated_SNPs_33612 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33487 DeepMRMD:1;iRNA_m5C:0.999536712157815 33488 chr11 118495748 118495748 1 + C T SKCM 118495756 + 118495736 118495776 41 GGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGG GGGGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCTGG < 41bp 1 0.189285177664161 1 0.0439813435077667 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495756 chr11:118495748 nonsynonymous SNV 0.976 0 13 hm5C_associated_SNPs_33613 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33488 DeepMRMD:1;iRNA_m5C:0.999536712157815 33489 chr11 118495748 118495748 1 + C T SKCM 118495757 + 118495737 118495777 41 GGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGT GGGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCTGGT < 41bp 1 0.208043124932041 1 0.0287624001502991 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495757 chr11:118495748 nonsynonymous SNV 0.976 0 12 hm5C_associated_SNPs_33614 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33489 DeepMRMD:1;iRNA_m5C:0.999536712157815 33490 chr11 118495748 118495748 1 + C T SKCM 118495758 + 118495738 118495778 41 GGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGGTA GGGCCGAGCCTCTGGGCCCCCCTACAGCCCTGTTCCTGGTA < 41bp 1 0.0575273690917725 1 0.348158091306686 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495758 chr11:118495748 nonsynonymous SNV 0.976 0 11 hm5C_associated_SNPs_33615 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33490 DeepMRMD:1;iRNA_m5C:0.999536712157815 33491 chr5 73205660 73205660 1 + G A SKCM 73205662 + 73205642 73205682 41 GCCCAGCAGAGCCTGCTGGGCCACTGGAAGCACGGCCGGCA GCCCAGCAGAGCCTGCTGAGCCACTGGAAGCACGGCCGGCA < 41bp 1 0.268530387177606 1 0.145507305860519 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73205662 chr5:73205660 nonsynonymous SNV 0.014 0 19 hm5C_associated_SNPs_33616 0 0 0 0 1 cytosol 1 0.500231643998265 1 0.99953671200347 hm5C_site_33491 DeepMRMD:1;iRNA_m5C:0.99953671200347 33492 chr15 41859614 41859614 1 + C T SKCM 41859602 + 41859582 41859622 41 GAAGTCCTGGCTGTTGTGGTCCCTGTGCCCCCCTTTACCTG GAAGTCCTGGCTGTTGTGGTCCCTGTGCCCCCTTTTACCTG < 41bp 1 0.256277496394813 1 0.042967289686203 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41859602 chr15:41859614 synonymous SNV . 0 33 hm5C_associated_SNPs_33617 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_33492 DeepMRMD:1;iRNA_m5C:0.999536712157816 33493 chr7 142457342 142457342 1 + C T SKCM 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATGAATTCACTCCTGATCCTTACCTTTGTG < 41bp 1 0.317631062244202 1 0.0967507064342499 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457342 nonsynonymous SNV 0.011 1 18 hm5C_associated_SNPs_33618 0 0 0 0 1 Cytosol 1 0.500232884573131 1 0.999534230853738 hm5C_site_33493 DeepMRMD:1;iRNA_m5C:0.999534230853738 33494 chr7 142457342 142457342 1 + C T SKCM 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATGAATTCACTCCTGATCCTTACCTTTGTGGC < 41bp 1 0.280092214169368 1 0.279223620891571 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457342 nonsynonymous SNV 0.011 1 16 hm5C_associated_SNPs_33619 0 0 0 0 1 Cytosol 1 0.500231644015964 1 0.999536711968073 hm5C_site_33494 DeepMRMD:1;iRNA_m5C:0.999536711968073 33495 chr7 142457342 142457342 1 + C T SKCM 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATGAATTCACTCCTGATCCTTACCTTTGTGGCA < 41bp 1 0.108164953918099 1 0.393027812242508 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457342 nonsynonymous SNV 0.011 1 15 hm5C_associated_SNPs_33620 0 0 0 0 1 Cytosol 1 0.500231297761116 1 0.999537404477769 hm5C_site_33495 DeepMRMD:1;iRNA_m5C:0.999537404477769 33496 chr7 142457342 142457342 1 + C T SKCM 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATGAATTCACTCCTGATCCTTACCTTTGTGGCAGCTGC < 41bp 1 0.0699679111757006 1 0.033601313829422 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457342 nonsynonymous SNV 0.011 1 10 hm5C_associated_SNPs_33621 0 0 0 0 1 Cytosol 1 0.500231644366143 1 0.999536711267714 hm5C_site_33496 DeepMRMD:1;iRNA_m5C:0.999536711267714 33497 chr7 142457342 142457342 1 + C T SKCM 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATGAATTCACTCCTGATCCTTACCTTTGTGGCAGCTGCT < 41bp 1 0.0463043308769519 1 0.0507729351520538 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457342 nonsynonymous SNV 0.011 1 9 hm5C_associated_SNPs_33622 0 0 0 0 1 Cytosol 1 0.500231616646719 1 0.999536766706562 hm5C_site_33497 DeepMRMD:1;iRNA_m5C:0.999536766706562 33498 chr7 142457342 142457342 1 + C T SKCM 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG GAATTCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.0380944197543241 1 0.024027019739151 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457342 nonsynonymous SNV 0.011 1 5 hm5C_associated_SNPs_33623 0 0 0 0 1 Cytosol 1 0.500231645783974 1 0.999536708432052 hm5C_site_33498 DeepMRMD:1;iRNA_m5C:0.999536708432052 33499 chr7 142457342 142457342 1 + C T SKCM 142457359 + 142457339 142457379 41 AATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA AATTCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTGA < 41bp 1 0.170778780212582 1 0.255864024162292 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457359 chr7:142457342 nonsynonymous SNV 0.011 1 4 hm5C_associated_SNPs_33624 0 0 0 0 1 Cytosol 1 0.500231704475607 1 0.999536591048787 hm5C_site_33499 DeepMRMD:1;iRNA_m5C:0.999536591048787 33500 chr18 72347510 72347510 1 + T C SKCM 72347515 + 72347495 72347535 41 GACAGCATGAGGAATTGCTGCGGGAGGTGAATAAGTATATA GACAGCATGAGGAATCGCTGCGGGAGGTGAATAAGTATATA < 41bp 1 0.503411625707395 1 0.867993414402008 experiment 0.993176748585211 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF407 ENSG00000215421 CDS Human protein_coding chr18:72347515 chr18:72347510 nonsynonymous SNV 0.990 3 16 hm5C_associated_SNPs_33625 0 0 1 0 0 Cytosol 1 0.500231643921115 0.264013171195984 0.999536712157771 hm5C_site_33500 DeepMRMD:0.264013171195984;iRNA_m5C:0.999536712157771 33501 chr14 105352963 105352963 1 + C T SKCM 105352950 + 105352930 105352970 41 CACCAAGGGCCCCCGGGGAGCCAACTCCCGCCTCTTTCTTC CACCAAGGGCCCCCGGGGAGCCAACTCCCGCCTTTTTCTTC < 41bp 1 0.048600599206339 1 0.063671886920929 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105352950 chr14:105352963 nonsynonymous SNV 0.376 4 34 hm5C_associated_SNPs_33626 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33501 DeepMRMD:1;iRNA_m5C:0.999536712157815 33502 chr6 7579526 7579526 1 + G A SKCM 7579519 + 7579499 7579539 41 ATTCCACAGCTGAAAAATACCAAGATCGAAGTTTTGGAAGA ATTCCACAGCTGAAAAATACCAAGATCAAAGTTTTGGAAGA < 41bp 1 0.684432874845738 1 0.699031949043274 experiment 0.631134250308524 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579519 chr6:7579526 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_33627 0 0 1 0 1 Nucleus 1 0.500231647294845 0.601936101913452 0.999536705410311 hm5C_site_33502 DeepMRMD:0.601936101913452;iRNA_m5C:0.999536705410311 33503 chr7 142457338 142457338 1 + G A SKCM 142457345 + 142457325 142457365 41 ACTCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTG ACTCTACCACCATAAATCCACTCCTGATCCTTACCTTTGTG < 41bp 1 0.195728139604046 1 0.0631865859031677 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457345 chr7:142457338 nonsynonymous SNV 0.029 4 14 hm5C_associated_SNPs_33628 0 0 0 0 1 Cytosol 1 0.5002317325917 1 0.999536534816599 hm5C_site_33503 DeepMRMD:1;iRNA_m5C:0.999536534816599 33504 chr7 142457338 142457338 1 + G A SKCM 142457347 + 142457327 142457367 41 TCTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGC TCTACCACCATAAATCCACTCCTGATCCTTACCTTTGTGGC < 41bp 1 0.21333078750021 1 0.153601348400116 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457347 chr7:142457338 nonsynonymous SNV 0.029 4 12 hm5C_associated_SNPs_33629 0 0 0 0 1 Cytosol 1 0.500231643961443 1 0.999536712077113 hm5C_site_33504 DeepMRMD:1;iRNA_m5C:0.999536712077113 33505 chr7 142457338 142457338 1 + G A SKCM 142457348 + 142457328 142457368 41 CTACCACCATGAATCCACTCCTGATCCTTACCTTTGTGGCA CTACCACCATAAATCCACTCCTGATCCTTACCTTTGTGGCA < 41bp 1 0.102857902709922 1 0.171760559082031 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457348 chr7:142457338 nonsynonymous SNV 0.029 4 11 hm5C_associated_SNPs_33630 0 0 0 0 1 Cytosol 1 0.50023164392111 1 0.999536712157779 hm5C_site_33505 DeepMRMD:1;iRNA_m5C:0.999536712157779 33506 chr7 142457338 142457338 1 + G A SKCM 142457353 + 142457333 142457373 41 ACCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC ACCATAAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGC < 41bp 1 0.0681257863396937 1 0.0354169309139252 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457353 chr7:142457338 nonsynonymous SNV 0.029 4 6 hm5C_associated_SNPs_33631 0 0 0 0 1 Cytosol 1 0.500231643921047 1 0.999536712157905 hm5C_site_33506 DeepMRMD:1;iRNA_m5C:0.999536712157905 33507 chr7 142457338 142457338 1 + G A SKCM 142457354 + 142457334 142457374 41 CCATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT CCATAAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCT < 41bp 1 0.0431095422787777 1 0.0870343744754791 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457354 chr7:142457338 nonsynonymous SNV 0.029 4 5 hm5C_associated_SNPs_33632 0 0 0 0 1 Cytosol 1 0.500231644085202 1 0.999536711829597 hm5C_site_33507 DeepMRMD:1;iRNA_m5C:0.999536711829597 33508 chr7 142457338 142457338 1 + G A SKCM 142457358 + 142457338 142457378 41 GAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG AAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCGTG < 41bp 1 0.0372190033596446 1 0.0260632634162903 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142457358 chr7:142457338 nonsynonymous SNV 0.029 4 1 hm5C_associated_SNPs_33633 0 0 0 0 1 Cytosol 1 0.500231644887748 1 0.999536710224504 hm5C_site_33508 DeepMRMD:1;iRNA_m5C:0.999536710224504 33509 chr20 62366045 62366045 1 + C T SKCM 62366054 + 62366034 62366074 41 TGCCCTCTGTCCGTCTCTTGCAGTGGTGGGGTCAGATGCTG TGCCCTCTGTCTGTCTCTTGCAGTGGTGGGGTCAGATGCTG < 41bp 1 0.425977829304929 1 0.303201377391815 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZGPAT ENSG00000197114 CDS Human protein_coding chr20:62366054 chr20:62366045 nonsynonymous SNV 0.532 1 12 hm5C_associated_SNPs_33634 0 0 1 0 1 chromatin 1 0.500231643924285 1 0.99953671215143 hm5C_site_33509 DeepMRMD:1;iRNA_m5C:0.99953671215143 33510 chr7 150764057 150764057 1 + C T SKCM 150764061 + 150764041 150764081 41 ACCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGG ACCTCGGGCCCGACCCTGGGCCCCCCACAAGCCCCATGAGG < 41bp 1 0.0528611840431035 1 0.0588125288486481 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764061 chr7:150764057 nonsynonymous SNV 0.956 3 17 hm5C_associated_SNPs_33635 0 0 1 0 1 Ribosome 1 0.500231643903139 1 0.999536712193722 hm5C_site_33510 DeepMRMD:1;iRNA_m5C:0.999536712193722 33511 chr7 150764057 150764057 1 + C T SKCM 150764062 + 150764042 150764082 41 CCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGT CCTCGGGCCCGACCCTGGGCCCCCCACAAGCCCCATGAGGT < 41bp 1 0.0404339469485251 1 0.0876970887184143 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764062 chr7:150764057 nonsynonymous SNV 0.956 3 16 hm5C_associated_SNPs_33636 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33511 DeepMRMD:1;iRNA_m5C:0.999536712157815 33512 chr7 150764057 150764057 1 + C T SKCM 150764063 + 150764043 150764083 41 CTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGTA CTCGGGCCCGACCCTGGGCCCCCCACAAGCCCCATGAGGTA < 41bp 1 0.282654515794971 1 0.146476119756699 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764063 chr7:150764057 nonsynonymous SNV 0.956 3 15 hm5C_associated_SNPs_33637 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33512 DeepMRMD:1;iRNA_m5C:0.999536712157815 33513 chr22 39382370 39382370 1 + C T SKCM 39382388 + 39382368 39382408 41 TTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA TTTGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA < 41bp 1 0.0760868735387691 1 0.0984456837177277 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382388 chr22:39382370 synonymous SNV . 0 3 hm5C_associated_SNPs_33638 0 0 0 0 2 exosome 1 0.500231644381638 1 0.999536711236724 hm5C_site_33513 DeepMRMD:1;iRNA_m5C:0.999536711236724 33514 chr20 32439967 32439967 1 + C T SKCM 32439982 + 32439962 32440002 41 CAGTCCCTCTACCAAATGTTCCCTCTATAGCCCTACCATCA CAGTCTCTCTACCAAATGTTCCCTCTATAGCCCTACCATCA < 41bp 1 0.0624524716665205 1 0.0903692543506622 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32439982 chr20:32439967 nonsynonymous SNV 0.998 1 6 hm5C_associated_SNPs_33639 0 0 1 0 2 Ribosome 1 0.500231643903334 1 0.999536712193333 hm5C_site_33514 DeepMRMD:1;iRNA_m5C:0.999536712193333 33515 chr20 32439967 32439967 1 + C T SKCM 32439983 + 32439963 32440003 41 AGTCCCTCTACCAAATGTTCCCTCTATAGCCCTACCATCAA AGTCTCTCTACCAAATGTTCCCTCTATAGCCCTACCATCAA < 41bp 1 0.0572569704641275 1 0.0617979764938354 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32439983 chr20:32439967 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_33640 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33515 DeepMRMD:1;iRNA_m5C:0.999536712157815 33516 chr6 31912759 31912759 1 + G A SKCM 31912772 + 31912752 31912792 41 GGCAGGAGAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT GGCAGGAAAATCTGGGGGAGCAGTTTTCCTTGAGCGGAGAT < 41bp 1 0.145475565653312 1 0.261187165975571 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C2 ENSG00000166278 CDS Human protein_coding chr6:31912772 chr6:31912759 nonsynonymous SNV 0.999 4 8 hm5C_associated_SNPs_33641 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33516 DeepMRMD:1;iRNA_m5C:0.999536712157815 33517 chr11 63743726 63743726 1 + C T SKCM 63743738 + 63743718 63743758 41 TCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCT TCCTGCTTTGTGACCTTCCTCCTGCCAGCGGGCTGGATCCT < 41bp 1 0.19042256881974 1 0.415048271417618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743738 chr11:63743726 synonymous SNV . 0 9 hm5C_associated_SNPs_33642 0 0 1 0 1 Ribosome 1 0.500231768746401 1 0.999536462507198 hm5C_site_33517 DeepMRMD:1;iRNA_m5C:0.999536462507198 33518 chr11 63743726 63743726 1 + C T SKCM 63743739 + 63743719 63743759 41 CCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTG CCTGCTTTGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTG < 41bp 1 0.551815636201735 1 0.295432299375534 experiment 0.896368727596531 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743739 chr11:63743726 synonymous SNV . 0 8 hm5C_associated_SNPs_33643 0 0 1 0 1 Ribosome 1 0.500231643921086 1 0.999536712157827 hm5C_site_33518 DeepMRMD:1;iRNA_m5C:0.999536712157827 33519 chr19 42373208 42373208 1 + C T SKCM 42373193 + 42373173 42373213 41 GTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGC GTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCTGAGGC < 41bp 1 0.245086808427614 1 0.107242614030838 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373193 chr19:42373208 stopgain 0.999 1 36 hm5C_associated_SNPs_33644 2 0 1 0 1 Cytosol 1 0.500231643922366 1 0.999536712155268 hm5C_site_33519 DeepMRMD:1;iRNA_m5C:0.999536712155268 Diamond-Blackfan anemia 1 Diamond-Blackfan anemia 1 33520 chr19 42373208 42373208 1 + C T SKCM 42373194 + 42373174 42373214 41 TCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCT TCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCTGAGGCT < 41bp 1 0.25277075502836 1 0.11799544095993 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373194 chr19:42373208 stopgain 0.999 1 35 hm5C_associated_SNPs_33645 2 0 1 0 1 Cytosol 1 0.50023164417352 1 0.99953671165296 hm5C_site_33520 DeepMRMD:1;iRNA_m5C:0.99953671165296 Diamond-Blackfan anemia 1 Diamond-Blackfan anemia 1 33521 chr19 42373208 42373208 1 + C T SKCM 42373198 + 42373178 42373218 41 AGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAA AGAAACGGCGTCATGCCCAGCCACTTCAGCTGAGGCTCCAA < 41bp 1 0.13261825134272 1 0.480832546949387 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373198 chr19:42373208 stopgain 0.999 1 31 hm5C_associated_SNPs_33646 2 0 1 0 1 Cytosol 1 0.500231643921105 1 0.999536712157791 hm5C_site_33521 DeepMRMD:1;iRNA_m5C:0.999536712157791 Diamond-Blackfan anemia 1 Diamond-Blackfan anemia 1 33522 chr19 42373208 42373208 1 + C T SKCM 42373199 + 42373179 42373219 41 GAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAG GAAACGGCGTCATGCCCAGCCACTTCAGCTGAGGCTCCAAG < 41bp 1 0.189321505833674 1 0.251600384712219 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373199 chr19:42373208 stopgain 0.999 1 30 hm5C_associated_SNPs_33647 2 0 1 0 1 Cytosol 1 0.500231619292665 1 0.99953676141467 hm5C_site_33522 DeepMRMD:1;iRNA_m5C:0.99953676141467 Diamond-Blackfan anemia 1 Diamond-Blackfan anemia 1 33523 chr19 42373208 42373208 1 + C T SKCM 42373215 + 42373195 42373235 41 CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCGGG CAGCCACTTCAGCTGAGGCTCCAAGAGTGTGGCCCGCCGGG < 41bp 1 0.271891267936129 1 0.364092320203781 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373215 chr19:42373208 stopgain 0.999 1 14 hm5C_associated_SNPs_33648 2 0 1 0 1 Cytosol 1 0.500231644396477 1 0.999536711207046 hm5C_site_33523 DeepMRMD:1;iRNA_m5C:0.999536711207046 Diamond-Blackfan anemia 1 Diamond-Blackfan anemia 1 33524 chr19 42373208 42373208 1 + C T SKCM 42373228 + 42373208 42373248 41 CGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCT TGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCT < 41bp 1 0.275680391513238 1 0.0794028043746948 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373228 chr19:42373208 stopgain 0.999 1 1 hm5C_associated_SNPs_33649 2 0 1 0 1 Cytosol 1 0.500231643921175 1 0.999536712157651 hm5C_site_33524 DeepMRMD:1;iRNA_m5C:0.999536712157651 Diamond-Blackfan anemia 1 Diamond-Blackfan anemia 1 33525 chr17 38152518 38152518 1 + C T SKCM 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTTCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC < 41bp 1 0.352584191130796 1 0.193485230207443 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152518 nonsynonymous SNV 0.996 3 4 hm5C_associated_SNPs_33650 0 0 1 0 2 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_33525 DeepMRMD:1;iRNA_m5C:0.999536712157813 33526 chr17 37360881 37360881 1 + G A SKCM 37360862 + 37360842 37360882 41 CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGAA < 41bp 1 0.521090524987145 1 0.15184074640274 experiment 0.95781895002571 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360862 chr17:37360881 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_33651 0 0 1 0 0 chromatin 1 0.50023164309657 1 0.99953671380686 hm5C_site_33526 DeepMRMD:1;iRNA_m5C:0.99953671380686 33527 chr17 37360881 37360881 1 + G A SKCM 37360876 + 37360856 37360896 41 GGAGATCATCAAGACTTTATCCAAGGAGGAAGAGACCAAGA GGAGATCATCAAGACTTTATCCAAGAAGGAAGAGACCAAGA < 41bp 1 0.432167870877827 1 0.814360618591309 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360876 chr17:37360881 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_33652 0 0 1 0 0 chromatin 1 0.500231643921092 0.371278762817382 0.999536712157815 hm5C_site_33527 DeepMRMD:0.371278762817382;iRNA_m5C:0.999536712157815 33528 chr1 54665980 54665980 1 + G A SKCM 54665990 + 54665970 54666010 41 CGGCCTTGGGGGCTTCGGGGCCCCGAGACGCGGGGCGTATG CGGCCTTGGGAGCTTCGGGGCCCCGAGACGCGGGGCGTATG < 41bp 1 0.418982566975334 1 0.159191071987152 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54665990 chr1:54665980 nonsynonymous SNV 0.844 0 11 hm5C_associated_SNPs_33653 0 0 1 0 0 Ribosome 1 0.500231643919504 1 0.999536712160992 hm5C_site_33528 DeepMRMD:1;iRNA_m5C:0.999536712160992 33529 chr1 54665980 54665980 1 + G A SKCM 54665992 + 54665972 54666012 41 GCCTTGGGGGCTTCGGGGCCCCGAGACGCGGGGCGTATGAG GCCTTGGGAGCTTCGGGGCCCCGAGACGCGGGGCGTATGAG < 41bp 1 0.467763423494778 1 0.493975609540939 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54665992 chr1:54665980 nonsynonymous SNV 0.844 0 9 hm5C_associated_SNPs_33654 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33529 DeepMRMD:1;iRNA_m5C:0.999536712157815 33530 chr6 5369155 5369155 1 + C T SKCM 5369153 + 5369133 5369173 41 CTCGGTCTACGACAACCTTTCTCCAGTGGTCACGACCTGGC CTCGGTCTACGACAACCTTTCTTCAGTGGTCACGACCTGGC < 41bp 1 0.577617954072394 1 0.406174302101135 experiment 0.844764091855212 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout FARS2 ENSG00000145982 CDS Human protein_coding chr6:5369153 chr6:5369155 nonsynonymous SNV 0.932 4 23 hm5C_associated_SNPs_33655 0 0 1 0 0 Ribosome 1 0.500231643666731 1 0.999536712666539 hm5C_site_33530 DeepMRMD:1;iRNA_m5C:0.999536712666539 33531 chr7 142458495 142458495 1 + G T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTTG < 41bp 1 0.219667877701044 1 0.350595206022263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458495 nonsynonymous SNV 0.199 5 40 hm5C_associated_SNPs_33656 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33531 DeepMRMD:1;iRNA_m5C:0.999536712157815 33532 chr7 142458495 142458495 1 + G T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTTGC < 41bp 1 0.629733733735896 1 0.826833844184875 experiment 0.740532532528208 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458495 nonsynonymous SNV 0.199 5 39 hm5C_associated_SNPs_33657 0 0 0 0 3 Cytosol 1 0.50023164392101 0.34633231163025 0.999536712157979 hm5C_site_33532 DeepMRMD:0.34633231163025;iRNA_m5C:0.999536712157979 33533 chr7 142458495 142458495 1 + G T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTTGCTACCACT < 41bp 1 0.108181806329444 1 0.0593807101249695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458495 nonsynonymous SNV 0.199 5 32 hm5C_associated_SNPs_33658 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33533 DeepMRMD:1;iRNA_m5C:0.999536712157815 33534 chr7 142458495 142458495 1 + G T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTTGCTACCACTT < 41bp 1 0.269959300762219 1 0.0877957940101624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458495 nonsynonymous SNV 0.199 5 31 hm5C_associated_SNPs_33659 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33534 DeepMRMD:1;iRNA_m5C:0.999536712157815 33535 chr7 142458495 142458495 1 + G T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACCAGGTGTCCCTGAATTCTTGCTACCACTTC < 41bp 1 0.69099440199951 1 0.330665588378906 experiment 0.61801119600098 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458495 nonsynonymous SNV 0.199 5 30 hm5C_associated_SNPs_33660 0 0 0 0 3 Cytosol 1 0.500231643918204 1 0.999536712163591 hm5C_site_33535 DeepMRMD:1;iRNA_m5C:0.999536712163591 33536 chr7 142458495 142458495 1 + G T SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCCTGAATTCTTGCTACCACTTCTGTGGTG < 41bp 1 0.457028853974601 1 0.265046298503876 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458495 nonsynonymous SNV 0.199 5 23 hm5C_associated_SNPs_33661 0 0 0 0 3 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_33536 DeepMRMD:1;iRNA_m5C:0.999536712157806 33537 chr7 142458495 142458495 1 + G T SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0820580456962347 1 0.0390227138996124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458495 nonsynonymous SNV 0.199 5 19 hm5C_associated_SNPs_33662 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33537 DeepMRMD:1;iRNA_m5C:0.999536712157815 33538 chr7 142458495 142458495 1 + G T SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0654744737056624 1 0.0672702193260193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458495 nonsynonymous SNV 0.199 5 16 hm5C_associated_SNPs_33663 0 0 0 0 3 Cytosol 1 0.500231643921386 1 0.999536712157228 hm5C_site_33538 DeepMRMD:1;iRNA_m5C:0.999536712157228 33539 chr7 142458495 142458495 1 + G T SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.200832271108561 1 0.160844922065735 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458495 nonsynonymous SNV 0.199 5 15 hm5C_associated_SNPs_33664 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33539 DeepMRMD:1;iRNA_m5C:0.999536712157815 33540 chr7 142458495 142458495 1 + G T SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.278492086266265 1 0.199355125427246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458495 nonsynonymous SNV 0.199 5 13 hm5C_associated_SNPs_33665 0 0 0 0 3 Cytosol 1 0.50023164392448 1 0.99953671215104 hm5C_site_33540 DeepMRMD:1;iRNA_m5C:0.99953671215104 33541 chr7 142458495 142458495 1 + G T SKCM 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTTGCTACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.604979514506804 1 0.354604482650757 experiment 0.790040970986392 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458495 nonsynonymous SNV 0.199 5 10 hm5C_associated_SNPs_33666 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33541 DeepMRMD:1;iRNA_m5C:0.999536712157815 33542 chr7 142458495 142458495 1 + G T SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG TGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.24317787904717 1 0.0957399308681488 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458495 nonsynonymous SNV 0.199 5 1 hm5C_associated_SNPs_33667 0 0 0 0 3 Cytosol 1 0.500231681826414 1 0.999536636347172 hm5C_site_33542 DeepMRMD:1;iRNA_m5C:0.999536636347172 33543 chr4 26407852 26407852 1 + C T SKCM 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTTAT < 41bp 1 0.296266800745056 1 0.232951402664185 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407852 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_33668 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_33543 DeepMRMD:1;iRNA_m5C:0.999536712157815 33544 chr8 26505265 26505265 1 + C T SKCM 26505249 + 26505229 26505269 41 AGGCCGCATTGCTGTGGGATCCGATGCCGACCTGGTCATCT AGGCCGCATTGCTGTGGGATCCGATGCCGACCTGGTTATCT < 41bp 1 0.15534134120964 1 0.168839395046234 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26505249 chr8:26505265 synonymous SNV . 0 37 hm5C_associated_SNPs_33669 0 0 1 0 0 Nucleus 1 0.500231646290319 1 0.999536707419362 hm5C_site_33544 DeepMRMD:1;iRNA_m5C:0.999536707419362 33545 chr7 142458496 142458496 1 + G A SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGA < 41bp 1 0.20816379892012 1 0.347931861877441 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458496 nonsynonymous SNV 0.222 4 41 hm5C_associated_SNPs_33670 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33545 DeepMRMD:1;iRNA_m5C:0.999536712157815 33546 chr7 142458496 142458496 1 + G A SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGAC < 41bp 1 0.631880335758152 1 0.829586267471313 experiment 0.736239328483696 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458496 nonsynonymous SNV 0.222 4 40 hm5C_associated_SNPs_33671 0 0 0 0 3 Cytosol 1 0.500231643727356 0.340827465057374 0.999536712545287 hm5C_site_33546 DeepMRMD:0.340827465057374;iRNA_m5C:0.999536712545287 33547 chr7 142458496 142458496 1 + G A SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGACTACCACT < 41bp 1 0.103205104471937 1 0.0518153309822083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458496 nonsynonymous SNV 0.222 4 33 hm5C_associated_SNPs_33672 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33547 DeepMRMD:1;iRNA_m5C:0.999536712157815 33548 chr7 142458496 142458496 1 + G A SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACCAGGTGTCCCTGAATTCTGACTACCACTT < 41bp 1 0.29639486359086 1 0.10324028134346 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458496 nonsynonymous SNV 0.222 4 32 hm5C_associated_SNPs_33673 0 0 0 0 3 Cytosol 1 0.500231643921116 1 0.999536712157768 hm5C_site_33548 DeepMRMD:1;iRNA_m5C:0.999536712157768 33549 chr7 142458496 142458496 1 + G A SKCM 142458493 + 142458473 142458513 41 CTACCAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTG CTACCAGGTGTCCCTGAATTCTGACTACCACTTCTGTGGTG < 41bp 1 0.558419176066558 1 0.478073567152023 experiment 0.883161647866883 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458493 chr7:142458496 nonsynonymous SNV 0.222 4 24 hm5C_associated_SNPs_33675 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33549 DeepMRMD:1;iRNA_m5C:0.999536712157815 33550 chr7 142458496 142458496 1 + G A SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCCCTGAATTCTGACTACCACTTCTGTGGTGGCTC < 41bp 1 0.0795824531327168 1 0.0152190327644348 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458496 nonsynonymous SNV 0.222 4 20 hm5C_associated_SNPs_33676 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33550 DeepMRMD:1;iRNA_m5C:0.999536712157815 33551 chr7 142458496 142458496 1 + G A SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGACTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0774220025343229 1 0.0876059234142303 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458496 nonsynonymous SNV 0.222 4 17 hm5C_associated_SNPs_33677 0 0 0 0 3 Cytosol 1 0.500231643922308 1 0.999536712155384 hm5C_site_33551 DeepMRMD:1;iRNA_m5C:0.999536712155384 33552 chr7 142458496 142458496 1 + G A SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGACTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.191330672384456 1 0.406157404184341 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458496 nonsynonymous SNV 0.222 4 16 hm5C_associated_SNPs_33678 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33552 DeepMRMD:1;iRNA_m5C:0.999536712157815 33553 chr7 142458496 142458496 1 + G A SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGACTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.264415114474739 1 0.324322044849396 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458496 nonsynonymous SNV 0.222 4 14 hm5C_associated_SNPs_33679 0 0 0 0 3 Cytosol 1 0.5002316439211 1 0.9995367121578 hm5C_site_33553 DeepMRMD:1;iRNA_m5C:0.9995367121578 33554 chr7 142458496 142458496 1 + G A SKCM 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGACTACCACTTCTGTGGTGGCTCCCTCATCAA < 41bp 1 0.603945325903224 1 0.270496964454651 experiment 0.792109348193551 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458496 nonsynonymous SNV 0.222 4 11 hm5C_associated_SNPs_33680 0 0 0 0 3 Cytosol 1 0.500231643823316 1 0.999536712353369 hm5C_site_33554 DeepMRMD:1;iRNA_m5C:0.999536712353369 33555 chr7 142458496 142458496 1 + G A SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GACTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG < 41bp 1 0.249740580581814 1 0.144561231136322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458496 nonsynonymous SNV 0.222 4 2 hm5C_associated_SNPs_33681 0 0 0 0 3 Cytosol 1 0.500233284459341 1 0.999533431081318 hm5C_site_33555 DeepMRMD:1;iRNA_m5C:0.999533431081318 33556 chr2 10560048 10560048 1 + C T SKCM 10560051 + 10560031 10560071 41 AAGATCTACGCCAACTTCTTCCCCTACGGCGACGCTTCCAA AAGATCTACGCCAACTTTTTCCCCTACGGCGACGCTTCCAA < 41bp 1 0.14650655615661 1 0.126129627227783 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10560051 chr2:10560048 synonymous SNV . 0 18 hm5C_associated_SNPs_33682 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33556 DeepMRMD:1;iRNA_m5C:0.999536712157815 33557 chr2 100007159 100007159 1 + A G SKCM 100007146 + 100007126 100007166 41 AGGCCTCCTGTTACCTCCTCCTATGAAGGAATTACGAGTGA AGGCCTCCTGTTACCTCCTCCTATGAAGGAATTGCGAGTGA < 41bp 1 0.355852970150097 1 0.210920929908752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100007146 chr2:100007159 synonymous SNV . 0 34 hm5C_associated_SNPs_33684 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33557 DeepMRMD:1;iRNA_m5C:0.999536712157815 33558 chr3 184042684 184042684 1 + C T SKCM 184042675 + 184042655 184042695 41 GTGAATGGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAG GTGAATGGCAGGCAGAGGAACGAGGACGCTTGAAGGAAGAG < 41bp 1 0.54299121745951 1 0.524377405643463 experiment 0.914017565080981 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042675 chr3:184042684 synonymous SNV . 0 30 hm5C_associated_SNPs_33685 0 0 1 0 1 Nucleus 1 0.500231643924633 0.951245188713074 0.999536712150733 hm5C_site_33558 DeepMRMD:0.951245188713074;iRNA_m5C:0.999536712150733 33559 chr3 184042684 184042684 1 + C T SKCM 184042681 + 184042661 184042701 41 GGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAA GGCAGGCAGAGGAACGAGGACGCTTGAAGGAAGAGCTGGAA < 41bp 1 0.283301543791533 1 0.426403135061264 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042681 chr3:184042684 synonymous SNV . 0 24 hm5C_associated_SNPs_33686 0 0 1 0 1 Nucleus 1 0.500231646153887 1 0.999536707692225 hm5C_site_33559 DeepMRMD:1;iRNA_m5C:0.999536707692225 33560 chr3 11301449 11301449 1 + G A SKCM 11301466 + 11301446 11301486 41 AGAGAACCCCAAGGGGGATGCCAAGAAACCAGGGAAGGAGT AGAAAACCCCAAGGGGGATGCCAAGAAACCAGGGAAGGAGT < 41bp 1 0.225161157937536 1 0.495523244142532 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HRH1 ENSG00000196639 CDS Human protein_coding chr3:11301466 chr3:11301449 synonymous SNV . 0 4 hm5C_associated_SNPs_33687 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33560 DeepMRMD:1;iRNA_m5C:0.999536712157815 33561 chr2 28999786 28999786 1 + C A SKCM 28999796 + 28999776 28999816 41 TGTATCAAGTCTCGGGAGATCTTTCTCAGCCAGCCTATTCT TGTATCAAGTATCGGGAGATCTTTCTCAGCCAGCCTATTCT < 41bp 1 0.1232323012588 1 0.0834178328514099 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1CB ENSG00000213639 CDS Human protein_coding chr2:28999796 chr2:28999786 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_33688 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33561 DeepMRMD:1;iRNA_m5C:0.999536712157815 33562 chr15 73415021 73415021 1 + C T SKCM 73415033 + 73415013 73415053 41 TCAAACTTCCAAGTGGAATGCTGGTTATCAGCAATGCAACT TCAAACTTTCAAGTGGAATGCTGGTTATCAGCAATGCAACT < 41bp 1 0.336563554429476 1 0.200703054666519 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEO1 ENSG00000067141 CDS Human protein_coding chr15:73415033 chr15:73415021 nonsynonymous SNV 0.985 0 9 hm5C_associated_SNPs_33689 0 0 0 0 0 Ribosome 1 0.500231643920866 1 0.999536712158268 hm5C_site_33562 DeepMRMD:1;iRNA_m5C:0.999536712158268 33563 chr22 29533450 29533450 1 + C T SKCM 29533451 + 29533431 29533471 41 ACCATCCGGGTTCCGGGGGCCTCCCACATCCACTTCAGCTT ACCATCCGGGTTCCGGGGGTCTCCCACATCCACTTCAGCTT < 41bp 1 0.273722939457118 1 0.32380798459053 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533451 chr22:29533450 nonsynonymous SNV 0.992 3 20 hm5C_associated_SNPs_33690 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643922356 1 0.999536712155288 hm5C_site_33563 DeepMRMD:1;iRNA_m5C:0.999536712155288 33564 chr2 85598230 85598230 1 + C T SKCM 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTTGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT < 41bp 1 0.384008093594418 1 0.4549500644207 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598230 stopgain 0.985 1 5 hm5C_associated_SNPs_33691 0 0 1 0 1 Cytosol 1 0.500231642322302 1 0.999536715355395 hm5C_site_33564 DeepMRMD:1;iRNA_m5C:0.999536715355395 33565 chr14 76112819 76112819 1 + G A SKCM 76112807 + 76112787 76112827 41 CCACTGCTGTGTCAGAGGATCATCTCTGAGAGGAAGGTGGT CCACTGCTGTGTCAGAGGATCATCTCTGAGAGAAAGGTGGT < 41bp 1 0.116938744602964 1 0.0667169094085693 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76112807 chr14:76112819 nonsynonymous SNV 0.261 1 33 hm5C_associated_SNPs_33692 0 0 0 3 1 Cytosol 1 0.500231675958639 1 0.999536648082722 hm5C_site_33565 DeepMRMD:1;iRNA_m5C:0.999536648082722 33566 chr4 166254685 166254685 1 + C T SKCM 166254694 + 166254674 166254714 41 CATGGGGATCCCTTATAGTTCATGAAGCCCTTTATTTCTTA CATGGGGATCCTTTATAGTTCATGAAGCCCTTTATTTCTTA < 41bp 1 0.560761944062702 1 0.100223928689957 experiment 0.878476111874597 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166254694 chr4:166254685 nonsynonymous SNV 0.976 1 12 hm5C_associated_SNPs_33694 0 0 1 0 1 Ribosome 1 0.500231643924277 1 0.999536712151447 hm5C_site_33566 DeepMRMD:1;iRNA_m5C:0.999536712151447 33567 chr7 142460757 142460757 1 + C T SKCM 142460745 + 142460725 142460765 41 TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGT TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTTCAAGGAGT < 41bp 1 0.433122662575985 1 0.0905065536499023 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460745 chr7:142460757 synonymous SNV . 0 33 hm5C_associated_SNPs_33695 0 0 0 0 0 Cytosol 1 0.500231643921661 1 0.999536712156677 hm5C_site_33567 DeepMRMD:1;iRNA_m5C:0.999536712156677 33568 chr7 142460757 142460757 1 + C T SKCM 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTCTGCAATGGACAGCTTCAAGGAGTTGTCTCCTGGGGT < 41bp 1 0.543972800491146 1 0.353253751993179 experiment 0.912054399017709 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460757 synonymous SNV . 0 20 hm5C_associated_SNPs_33696 0 0 0 0 0 Cytosol 1 0.500231643919146 1 0.999536712161707 hm5C_site_33568 DeepMRMD:1;iRNA_m5C:0.999536712161707 33569 chr7 142460757 142460757 1 + C T SKCM 142460769 + 142460749 142460789 41 GGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC GGACAGCTTCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC < 41bp 1 0.618374023092916 1 0.723618924617767 experiment 0.763251953814168 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460769 chr7:142460757 synonymous SNV . 0 9 hm5C_associated_SNPs_33697 0 0 0 0 0 Cytosol 1 0.500231643921092 0.552762150764466 0.999536712157815 hm5C_site_33569 DeepMRMD:0.552762150764466;iRNA_m5C:0.999536712157815 33570 chr7 142460757 142460757 1 + C T SKCM 142460771 + 142460751 142460791 41 ACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC ACAGCTTCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC < 41bp 1 0.327117091941211 1 0.805514335632324 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460771 chr7:142460757 synonymous SNV . 0 7 hm5C_associated_SNPs_33698 0 0 0 0 0 Cytosol 1 0.500231646766923 0.388971328735352 0.999536706466153 hm5C_site_33570 DeepMRMD:0.388971328735352;iRNA_m5C:0.999536706466153 33571 chr8 123965554 123965554 1 + C T SKCM 123965569 + 123965549 123965589 41 AAGGCCAAGATGTGGGAGCCCCCAATGGTGCTCTGTCTCGA AAGGCTAAGATGTGGGAGCCCCCAATGGTGCTCTGTCTCGA < 41bp 1 0.524710662474281 1 0.696686506271362 experiment 0.950578675051438 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZHX2 ENSG00000178764 CDS Human protein_coding chr8:123965569 chr8:123965554 stopgain 0.332 0 6 hm5C_associated_SNPs_33699 0 0 0 0 0 Nucleus 1 0.500231643921092 0.606626987457276 0.999536712157815 hm5C_site_33571 DeepMRMD:0.606626987457276;iRNA_m5C:0.999536712157815 33572 chr22 42032201 42032201 1 + A G SKCM 42032200 + 42032180 42032220 41 TTCTATGGTACCGAGAAAGACAAAAATTCAGTGAATTTTAA TTCTATGGTACCGAGAAAGACGAAAATTCAGTGAATTTTAA < 41bp 1 0.564447253631271 1 0.224667459726334 experiment 0.871105492737459 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42032200 chr22:42032201 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_33700 0 0 1 0 1 Cytosol 1 0.500231642616166 1 0.999536714767667 hm5C_site_33572 DeepMRMD:1;iRNA_m5C:0.999536714767667 33573 chr22 32889265 32889265 1 + C T SKCM 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAGGTTTTTATATCTGCGTGATTTTTGAGGTGAT < 41bp 1 0.576965919047658 1 0.609486818313599 experiment 0.846068161904685 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889265 stopgain 1.000 1 33 hm5C_associated_SNPs_33701 0 0 1 0 1 chromatin 1 0.500231643922004 0.781026363372802 0.999536712155992 hm5C_site_33573 DeepMRMD:0.781026363372802;iRNA_m5C:0.999536712155992 33574 chr17 73728000 73728000 1 + C T SKCM 73727993 + 73727973 73728013 41 CAACATCCATCTGAAACCTTCCTTCTCCGACGGCCTCAAGA CAACATCCATCTGAAACCTTCCTTCTCTGACGGCCTCAAGA < 41bp 1 0.00577801905163187 1 0.0167173147201538 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73727993 chr17:73728000 synonymous SNV . 0 28 hm5C_associated_SNPs_33702 0 0 0 0 1 Cytosol 1 0.500231653003008 1 0.999536693993985 hm5C_site_33574 DeepMRMD:1;iRNA_m5C:0.999536693993985 33575 chr19 990244 990244 1 + C T SKCM 990252 + 990232 990272 41 GGCCGACCCCTCCAGGATTCCGGCGCCCAGGCACGTCTGGT GGCCGACCCCTCTAGGATTCCGGCGCCCAGGCACGTCTGGT < 41bp 1 0.603899503025817 1 0.875205993652344 experiment 0.792200993948366 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR18 ENSG00000065268 CDS Human protein_coding chr19:990252 chr19:990244 synonymous SNV . 0 13 hm5C_associated_SNPs_33703 0 0 0 0 0 Ribosome 1 0.500231663211063 0.249588012695312 0.999536673577873 hm5C_site_33575 DeepMRMD:0.249588012695312;iRNA_m5C:0.999536673577873 33576 chr4 41262675 41262675 1 + C T SKCM 41262672 + 41262652 41262692 41 TTACATTCGCAGCATGAGAACTTCAGGAAAAAGCAGATTGA TTACATTCGCAGCATGAGAACTTTAGGAAAAAGCAGATTGA < 41bp 1 0.246824967156056 1 0.108371794223785 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41262672 chr4:41262675 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_33704 0 0 1 0 1 Ribosome 1 0.500231644144579 1 0.999536711710842 hm5C_site_33576 DeepMRMD:1;iRNA_m5C:0.999536711710842 33577 chrX 103434387 103434387 1 + C T SKCM 103434382 + 103434362 103434402 41 GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAGGTG GGAAGGAGAGGCTCAGTGGGCTCTTTCTTAACGAAGAGGTG < 41bp 1 0.332664305815344 1 0.0769754648208618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103434382 chrX:103434387 synonymous SNV . 0 26 hm5C_associated_SNPs_33705 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33577 DeepMRMD:1;iRNA_m5C:0.999536712157815 33578 chr11 65978611 65978611 1 + C T SKCM 65978630 + 65978610 65978650 41 TCATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGC TTATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGC < 41bp 1 0.0102513384464544 1 0.063933402299881 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978630 chr11:65978611 nonsynonymous SNV 0.996 3 2 hm5C_associated_SNPs_33706 0 0 1 0 1 Cytosol 1 0.500157389135972 1 0.999685221728056 hm5C_site_33578 DeepMRMD:1;iRNA_m5C:0.999685221728056 33579 chr11 65978611 65978611 1 + C T SKCM 65978631 + 65978611 65978651 41 CATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT TATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT < 41bp 1 0.303388110610894 1 0.453344762325287 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978631 chr11:65978611 nonsynonymous SNV 0.996 3 1 hm5C_associated_SNPs_33707 0 0 1 0 1 Cytosol 1 0.500231747995017 1 0.999536504009966 hm5C_site_33579 DeepMRMD:1;iRNA_m5C:0.999536504009966 33580 chr17 4905816 4905816 1 + C T SKCM 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTTGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG < 41bp 1 0.525677881729406 1 0.685210764408112 experiment 0.948644236541187 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905816 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_33708 0 0 1 0 1 Ribosome 1 0.500231643921092 0.629578471183776 0.999536712157815 hm5C_site_33580 DeepMRMD:0.629578471183776;iRNA_m5C:0.999536712157815 33581 chr4 3224155 3224155 1 + C T SKCM 3224157 + 3224137 3224177 41 GAAGAAACTTGGGCCACCCTCCTTGGTGTCCTGGTGACGCA GAAGAAACTTGGGCCACCTTCCTTGGTGTCCTGGTGACGCA < 41bp 1 0.0711214580364787 1 0.474665224552155 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3224157 chr4:3224155 nonsynonymous SNV 0.987 3 19 hm5C_associated_SNPs_33709 0 0 1 0 2 Cytosol 1 0.50023160158121 1 0.99953679683758 hm5C_site_33581 DeepMRMD:1;iRNA_m5C:0.99953679683758 33582 chrX 70519861 70519861 1 + C T SKCM 70519864 + 70519844 70519884 41 GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGCAGCT GGGCAATTGGTGGAACTTCTCCTGCATTCAACCGTGCAGCT < 41bp 1 0.316516648021976 1 0.341029286384583 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70519864 chrX:70519861 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_33710 0 0 1 0 1 Nucleus 1 0.500231643923181 1 0.999536712153638 hm5C_site_33582 DeepMRMD:1;iRNA_m5C:0.999536712153638 33583 chr1 22332203 22332203 1 + G A SKCM 22332191 + 22332171 22332211 41 CAGGTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGG CAGGTGGTGTTGGGTGAGTACAACCTTGCTGTAAAGGAGGG < 41bp 1 0.396648770601445 1 0.351978242397308 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332191 chr1:22332203 synonymous SNV . 0 33 hm5C_associated_SNPs_33711 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33583 DeepMRMD:1;iRNA_m5C:0.999536712157815 33584 chr1 22332203 22332203 1 + G A SKCM 22332194 + 22332174 22332214 41 GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC GTGGTGTTGGGTGAGTACAACCTTGCTGTAAAGGAGGGCCC < 41bp 1 0.118461931119164 1 0.230913281440735 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332194 chr1:22332203 synonymous SNV . 0 30 hm5C_associated_SNPs_33712 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643917024 1 0.999536712165952 hm5C_site_33584 DeepMRMD:1;iRNA_m5C:0.999536712165952 33585 chr1 22332203 22332203 1 + G A SKCM 22332195 + 22332175 22332215 41 TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC TGGTGTTGGGTGAGTACAACCTTGCTGTAAAGGAGGGCCCC < 41bp 1 0.540094016426787 1 0.15644645690918 experiment 0.919811967146426 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332195 chr1:22332203 synonymous SNV . 0 29 hm5C_associated_SNPs_33713 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643891784 1 0.999536712216431 hm5C_site_33585 DeepMRMD:1;iRNA_m5C:0.999536712216431 33586 chr1 22332203 22332203 1 + G A SKCM 22332212 + 22332192 22332232 41 AACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT AACCTTGCTGTAAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.24851497706376 1 0.097885936498642 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332212 chr1:22332203 synonymous SNV . 0 12 hm5C_associated_SNPs_33715 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921144 1 0.999536712157713 hm5C_site_33586 DeepMRMD:1;iRNA_m5C:0.999536712157713 33587 chr1 22332203 22332203 1 + G A SKCM 22332213 + 22332193 22332233 41 ACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCTTGCTGTAAAGGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.676091084986992 1 0.267620027065277 experiment 0.647817830026016 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332213 chr1:22332203 synonymous SNV . 0 11 hm5C_associated_SNPs_33716 0 0 0 0 2 Endoplasmic reticulum 1 0.500231675562951 1 0.999536648874098 hm5C_site_33587 DeepMRMD:1;iRNA_m5C:0.999536648874098 33588 chr1 22332203 22332203 1 + G A SKCM 22332214 + 22332194 22332234 41 CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCTTGCTGTAAAGGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.495541355107996 1 0.180873036384583 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332214 chr1:22332203 synonymous SNV . 0 10 hm5C_associated_SNPs_33717 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921 1 0.999536712158 hm5C_site_33588 DeepMRMD:1;iRNA_m5C:0.999536712158 33589 chr1 22332203 22332203 1 + G A SKCM 22332215 + 22332195 22332235 41 CTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CTTGCTGTAAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA < 41bp 1 0.66233633887501 1 0.269422143697739 experiment 0.675327322249981 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332215 chr1:22332203 synonymous SNV . 0 9 hm5C_associated_SNPs_33718 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643840498 1 0.999536712319004 hm5C_site_33589 DeepMRMD:1;iRNA_m5C:0.999536712319004 33590 chr7 73731909 73731909 1 + C T SKCM 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCCCCGGTCGTGGGGGGAAGCA < 41bp 1 0.32882033943028 1 0.143652409315109 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731909 synonymous SNV . 0 27 hm5C_associated_SNPs_33720 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33590 DeepMRMD:1;iRNA_m5C:0.999536712157815 33591 chr7 73731909 73731909 1 + C T SKCM 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCCCCGGTCGTGGGGGGAAGCAC < 41bp 1 0.485084077089742 1 0.145129054784775 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731909 synonymous SNV . 0 26 hm5C_associated_SNPs_33721 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33591 DeepMRMD:1;iRNA_m5C:0.999536712157815 33592 chr7 73731909 73731909 1 + C T SKCM 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCCCCGGTCGTGGGGGGAAGCACT < 41bp 1 0.232266096717218 1 0.346776902675629 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731909 synonymous SNV . 0 25 hm5C_associated_SNPs_33722 0 0 0 0 2 Ribosome 1 0.500231643921183 1 0.999536712157634 hm5C_site_33592 DeepMRMD:1;iRNA_m5C:0.999536712157634 33593 chr7 73731909 73731909 1 + C T SKCM 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCCGGTCGTGGGGGGAAGCACTC < 41bp 1 0.218274123238498 1 0.329267799854279 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731909 synonymous SNV . 0 24 hm5C_associated_SNPs_33723 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33593 DeepMRMD:1;iRNA_m5C:0.999536712157815 33594 chr11 61897294 61897294 1 + C A SKCM 61897299 + 61897279 61897319 41 AGCCAGCTGAGCTCCCGACGCCTCCGCAGCAAGGACAGTGT AGCCAGCTGAGCTCCAGACGCCTCCGCAGCAAGGACAGTGT < 41bp 1 0.0521180913671409 1 0.11842405796051 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897299 chr11:61897294 synonymous SNV . 0 16 hm5C_associated_SNPs_33724 0 0 1 0 1 chromatin 1 0.50023164391649 1 0.99953671216702 hm5C_site_33594 DeepMRMD:1;iRNA_m5C:0.99953671216702 33595 chr20 62366600 62366600 1 + C T SKCM 62366599 + 62366579 62366619 41 CTGGACCAGTGTGTGGAGACCCTGCAGAAGCAGACCAGGGT CTGGACCAGTGTGTGGAGACCTTGCAGAAGCAGACCAGGGT < 41bp 1 0.176310377144048 1 0.301807403564453 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62366599 chr20:62366600 synonymous SNV . 0 22 hm5C_associated_SNPs_33725 0 0 1 0 2 chromatin 1 0.500231637176339 1 0.999536725647323 hm5C_site_33595 DeepMRMD:1;iRNA_m5C:0.999536725647323 33596 chr1 150445119 150445119 1 + C T SKCM 150445130 + 150445110 150445150 41 GAGATGCACCCACTCATCTACCCTCTGTGGATCTTTCGAAC GAGATGCACTCACTCATCTACCCTCTGTGGATCTTTCGAAC < 41bp 1 0.0306576172487752 1 0.0420497357845306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150445130 chr1:150445119 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_33726 0 0 1 2 0 Cytosol 1 0.500231644031837 1 0.999536711936325 hm5C_site_33596 DeepMRMD:1;iRNA_m5C:0.999536711936325 33597 chr9 37424932 37424932 1 + C T SKCM 37424937 + 37424917 37424957 41 CGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGA CGGCCTGCTCTGCCTTCTCTCCGACCACGTGGACAAGAGGA < 41bp 1 0.205745004937278 1 0.756447553634644 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424937 chr9:37424932 synonymous SNV . 0 16 hm5C_associated_SNPs_33727 0 0 1 0 2 Ribosome 1 0.500231579876881 0.487104892730712 0.999536840246239 hm5C_site_33597 DeepMRMD:0.487104892730712;iRNA_m5C:0.999536840246239 33598 chr9 37424932 37424932 1 + C T SKCM 37424938 + 37424918 37424958 41 GGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGAT GGCCTGCTCTGCCTTCTCTCCGACCACGTGGACAAGAGGAT < 41bp 1 0.283754780856254 1 0.282757639884949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424938 chr9:37424932 synonymous SNV . 0 15 hm5C_associated_SNPs_33728 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_33598 DeepMRMD:1;iRNA_m5C:0.999536712157816 33599 chr2 220350093 220350093 1 + C T SKCM 220350113 + 220350093 220350133 41 CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT TCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT < 41bp 1 0.446530280970229 1 0.667911171913147 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220350113 chr2:220350093 synonymous SNV . 0 1 hm5C_associated_SNPs_33729 0 0 0 0 1 Nucleus 1 0.500231643921092 0.664177656173706 0.999536712157815 hm5C_site_33599 DeepMRMD:0.664177656173706;iRNA_m5C:0.999536712157815 33600 chr19 30313211 30313211 1 + C T SKCM 30313222 + 30313202 30313242 41 TTGCTGCTTCGGCCTTGTATCATTTCTCGTCATCTGAATTG TTGCTGCTTTGGCCTTGTATCATTTCTCGTCATCTGAATTG < 41bp 1 0.0817469374303346 1 0.0634353756904602 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313222 chr19:30313211 nonsynonymous SNV 0.990 4 10 hm5C_associated_SNPs_33730 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33600 DeepMRMD:1;iRNA_m5C:0.999536712157815 33601 chr17 48757187 48757187 1 + G A SKCM 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTGACATTTGCTCTGAACTGGATGATACAAATGATGTC < 41bp 1 0.559047301602896 1 0.304243147373199 experiment 0.881905396794209 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757187 nonsynonymous SNV 0.922 4 32 hm5C_associated_SNPs_33731 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164383001 1 0.999536712339981 hm5C_site_33601 DeepMRMD:1;iRNA_m5C:0.999536712339981 33602 chr15 22969327 22969327 1 + C T SKCM 22969313 + 22969293 22969333 41 CCCTGCACGTCTTCTGGGAGCTCAACTATGACTTCCTGCCC CCCTGCACGTCTTCTGGGAGCTCAACTATGACTTTCTGCCC < 41bp 1 0.631075303087133 1 0.33547455072403 experiment 0.737849393825734 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969313 chr15:22969327 synonymous SNV . 0 35 hm5C_associated_SNPs_33732 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_33602 DeepMRMD:1;iRNA_m5C:0.999536712157816 33603 chr3 49568970 49568970 1 + C T SKCM 49568966 + 49568946 49568986 41 CCCATCCAGGATCGTGCCAACCCCCACATCTCCAGCCATTG CCCATCCAGGATCGTGCCAACCCCTACATCTCCAGCCATTG < 41bp 1 0.195017039217744 1 0.0280861258506775 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DAG1 ENSG00000173402 CDS Human protein_coding chr3:49568966 chr3:49568970 synonymous SNV . 0 25 hm5C_associated_SNPs_33734 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33603 DeepMRMD:1;iRNA_m5C:0.999536712157815 33604 chr10 122664262 122664262 1 + C T SKCM 122664258 + 122664238 122664278 41 AGTCACTACTGTCACCTCGTCAGGCCCCTCTCAGAGCACCA AGTCACTACTGTCACCTCGTCAGGTCCCTCTCAGAGCACCA < 41bp 1 0.414513716332489 1 0.714253664016724 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664258 chr10:122664262 synonymous SNV . 0 25 hm5C_associated_SNPs_33735 0 0 1 0 1 Nucleus 1 0.500231660921552 0.571492671966552 0.999536678156896 hm5C_site_33604 DeepMRMD:0.571492671966552;iRNA_m5C:0.999536678156896 33605 chr19 14562690 14562690 1 + C T SKCM 14562705 + 14562685 14562725 41 ACCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG ACCATTCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG < 41bp 1 0.143544881631491 1 0.0936664044857025 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562705 chr19:14562690 synonymous SNV . 0 6 hm5C_associated_SNPs_33736 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_33605 DeepMRMD:1;iRNA_m5C:0.999536712157816 33606 chr19 14562690 14562690 1 + C T SKCM 14562706 + 14562686 14562726 41 CCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG CCATTCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG < 41bp 1 0.0496035855491472 1 0.200629860162735 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562706 chr19:14562690 synonymous SNV . 0 5 hm5C_associated_SNPs_33737 0 0 1 0 1 Ribosome 1 0.500231643898445 1 0.999536712203111 hm5C_site_33606 DeepMRMD:1;iRNA_m5C:0.999536712203111 33607 chr1 111991770 111991770 1 + G A SKCM 111991768 - 111991748 111991788 41 CGGAAGGAAACCCCACCCCCCCTAGTGCCCCCGGCGGCCCG CGGAAGGAAACCCCACCCTCCCTAGTGCCCCCGGCGGCCCG < 41bp 1 0.234222509100714 1 0.064373642206192 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR77 ENSG00000116455 CDS Human protein_coding chr1:111991768 chr1:111991770 nonsynonymous SNV 0.003 0 19 hm5C_associated_SNPs_33739 0 0 1 0 1 Ribosome 1 0.500231643933206 1 0.999536712133589 hm5C_site_33607 DeepMRMD:1;iRNA_m5C:0.999536712133589 33608 chr12 1005638 1005638 1 + G A SKCM 1005625 + 1005605 1005645 41 GGAACAAGCTGTTCTTCCTGCTGTGATACCAAAGAAAGAGA GGAACAAGCTGTTCTTCCTGCTGTGATACCAAAAAAAGAGA < 41bp 1 0.111885434946173 1 0.464649230241776 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WNK1 ENSG00000060237 CDS Human protein_coding chr12:1005625 chr12:1005638 synonymous SNV . 0 34 hm5C_associated_SNPs_33740 0 0 1 0 0 Ribosome 1 0.500231643921016 1 0.999536712157969 hm5C_site_33608 DeepMRMD:1;iRNA_m5C:0.999536712157969 33609 chr19 44515279 44515279 1 + C T SKCM 44515278 + 44515258 44515298 41 GAATCCACAGTGGAGAAAAACCATACAGATGTGAGGAGTGT GAATCCACAGTGGAGAAAAACTATACAGATGTGAGGAGTGT < 41bp 1 0.514854462787108 1 0.0788986384868622 experiment 0.970291074425784 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF230 ENSG00000159882 CDS Human protein_coding chr19:44515278 chr19:44515279 nonsynonymous SNV 0.016 1 22 hm5C_associated_SNPs_33741 0 0 1 0 0 cytosol 1 0.500231643921204 1 0.999536712157592 hm5C_site_33609 DeepMRMD:1;iRNA_m5C:0.999536712157592 33610 chr9 127982863 127982863 1 + C T SKCM 127982849 + 127982829 127982869 41 TGGACCACGCCAGAAGTGACCAGCCCCCCACCATCCCCAAG TGGACCACGCCAGAAGTGACCAGCCCCCCACCATTCCCAAG < 41bp 1 0.630753347752966 1 0.674006879329681 experiment 0.738493304494069 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982849 chr9:127982863 nonsynonymous SNV 0.950 3 35 hm5C_associated_SNPs_33742 0 0 0 3 1 Cytosol 1 0.500231643914101 0.651986241340638 0.999536712171798 hm5C_site_33610 DeepMRMD:0.651986241340638;iRNA_m5C:0.999536712171798 33611 chr17 73727994 73727994 1 + C T SKCM 73727993 + 73727973 73728013 41 CAACATCCATCTGAAACCTTCCTTCTCCGACGGCCTCAAGA CAACATCCATCTGAAACCTTCTTTCTCCGACGGCCTCAAGA < 41bp 1 0.0175436053355521 1 0.0148124098777771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73727993 chr17:73727994 synonymous SNV . 0 22 hm5C_associated_SNPs_33743 0 0 0 0 1 Cytosol 1 0.500231643920778 1 0.999536712158444 hm5C_site_33611 DeepMRMD:1;iRNA_m5C:0.999536712158444 33612 chr3 58112433 58112433 1 + C T SKCM 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCTTTTCGCACCGGGGGATTACGATGTTA < 41bp 1 0.445428497543053 1 0.0721394419670105 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112433 nonsynonymous SNV 0.944 5 15 hm5C_associated_SNPs_33744 0 0 1 0 1 Cytosol 1 0.500231643921095 1 0.99953671215781 hm5C_site_33612 DeepMRMD:1;iRNA_m5C:0.99953671215781 33613 chr3 58112433 58112433 1 + C T SKCM 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCTTTTCGCACCGGGGGATTACGATGTTAAT < 41bp 1 0.189783728466613 1 0.248887538909912 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112433 nonsynonymous SNV 0.944 5 13 hm5C_associated_SNPs_33745 0 0 1 0 1 Cytosol 1 0.500231643922 1 0.999536712156001 hm5C_site_33613 DeepMRMD:1;iRNA_m5C:0.999536712156001 33614 chr3 58112433 58112433 1 + C T SKCM 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCTTTTCGCACCGGGGGATTACGATGTTAATA < 41bp 1 0.396393025983444 1 0.873940348625183 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112433 nonsynonymous SNV 0.944 5 12 hm5C_associated_SNPs_33746 0 0 1 0 1 Cytosol 1 0.500231643921102 0.252119302749634 0.999536712157795 hm5C_site_33614 DeepMRMD:0.252119302749634;iRNA_m5C:0.999536712157795 33615 chr1 39876768 39876768 1 + C T SKCM 39876777 + 39876757 39876797 41 AAGCAGCACCCCCTTGGGGACACAGCCTGCACTGTGGAAAT AAGCAGCACCCTCTTGGGGACACAGCCTGCACTGTGGAAAT < 41bp 1 0.107173731714005 1 0.129159867763519 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA0754 ENSG00000255103 CDS Human other chr1:39876777 chr1:39876768 synonymous SNV . 0 12 hm5C_associated_SNPs_33747 0 0 1 0 0 Nucleus 1 0.500231644119643 1 0.999536711760715 hm5C_site_33615 DeepMRMD:1;iRNA_m5C:0.999536711760715 33616 chr8 145695010 145695010 1 + C T SKCM 145695008 + 145694988 145695028 41 CCGCCTAGACTGGGTCTTCCCTCCAGACGCCAGCCAGGAGG CCGCCTAGACTGGGTCTTCCCTTCAGACGCCAGCCAGGAGG < 41bp 1 0.623272660754115 1 0.810051321983337 experiment 0.75345467849177 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145695008 chr8:145695010 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_33749 0 0 1 0 1 nucleolus 1 0.500231643921092 0.379897356033326 0.999536712157815 hm5C_site_33616 DeepMRMD:0.379897356033326;iRNA_m5C:0.999536712157815 33617 chr7 142458518 142458518 1 + C T SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCTCT < 41bp 1 0.062819420589468 1 0.111455410718918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458518 synonymous SNV . 0 39 hm5C_associated_SNPs_33750 0 0 0 0 2 Cytosol 1 0.500231643921106 1 0.999536712157788 hm5C_site_33617 DeepMRMD:1;iRNA_m5C:0.999536712157788 33618 chr7 142458518 142458518 1 + C T SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCTCTC < 41bp 1 0.176243336635327 1 0.181730538606644 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458518 synonymous SNV . 0 38 hm5C_associated_SNPs_33751 0 0 0 0 2 Cytosol 1 0.500231643921083 1 0.999536712157834 hm5C_site_33618 DeepMRMD:1;iRNA_m5C:0.999536712157834 33619 chr7 142458518 142458518 1 + C T SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCTCTCAT < 41bp 1 0.27566449052503 1 0.379938155412674 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458518 synonymous SNV . 0 36 hm5C_associated_SNPs_33752 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_33619 DeepMRMD:1;iRNA_m5C:0.999536712157815 33620 chr7 142458518 142458518 1 + C T SKCM 142458506 + 142458486 142458526 41 CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAA CTGAATTCTGGCTACCACTTCTGTGGTGGCTCTCTCATCAA < 41bp 1 0.627491312649812 1 0.170124173164368 experiment 0.745017374700377 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458506 chr7:142458518 synonymous SNV . 0 33 hm5C_associated_SNPs_33753 0 0 0 0 2 Cytosol 1 0.500231643920781 1 0.999536712158438 hm5C_site_33620 DeepMRMD:1;iRNA_m5C:0.999536712158438 33621 chr7 142458518 142458518 1 + C T SKCM 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCTCTCATCAACGAACAGTG < 41bp 1 0.12837769523524 1 0.0427707433700562 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458518 synonymous SNV . 0 24 hm5C_associated_SNPs_33754 0 0 0 0 2 Cytosol 1 0.500262551728407 1 0.999474896543187 hm5C_site_33621 DeepMRMD:1;iRNA_m5C:0.999474896543187 33622 chr7 142458518 142458518 1 + C T SKCM 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCTCTCATCAACGAACAGTGGG < 41bp 1 0.214716098901415 1 0.0575221478939056 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458518 synonymous SNV . 0 22 hm5C_associated_SNPs_33755 0 0 0 0 2 Cytosol 1 0.500372691348354 1 0.999254617303293 hm5C_site_33622 DeepMRMD:1;iRNA_m5C:0.999254617303293 33623 chr7 142458518 142458518 1 + C T SKCM 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCTCTCATCAACGAACAGTGGGTG < 41bp 1 0.443985582147775 1 0.280475437641144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458518 synonymous SNV . 0 20 hm5C_associated_SNPs_33756 0 0 0 0 2 Cytosol 1 0.500231631837212 1 0.999536736325575 hm5C_site_33623 DeepMRMD:1;iRNA_m5C:0.999536736325575 33624 chr7 142458518 142458518 1 + C T SKCM 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCTCTCATCAACGAACAGTGGGTGGT < 41bp 1 0.574818004290354 1 0.782146334648132 experiment 0.850363991419291 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458518 synonymous SNV . 0 18 hm5C_associated_SNPs_33757 0 0 0 0 2 Cytosol 1 0.500231643933541 0.435707330703736 0.999536712132918 hm5C_site_33624 DeepMRMD:0.435707330703736;iRNA_m5C:0.999536712132918 33625 chr7 142458518 142458518 1 + C T SKCM 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCTCTCATCAACGAACAGTGGGTGGTATC < 41bp 1 0.690391347768946 1 0.561062276363373 experiment 0.619217304462108 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458518 synonymous SNV . 0 15 hm5C_associated_SNPs_33758 0 0 0 0 2 Cytosol 1 0.500231643921173 0.877875447273254 0.999536712157654 hm5C_site_33625 DeepMRMD:0.877875447273254;iRNA_m5C:0.999536712157654 33626 chr7 142458518 142458518 1 + C T SKCM 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCTCTCATCAACGAACAGTGGGTGGTATCAGC < 41bp 1 0.373817240482886 1 0.451323598623276 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458518 synonymous SNV . 0 12 hm5C_associated_SNPs_33759 0 0 0 0 2 Cytosol 1 0.500231617609359 1 0.999536764781283 hm5C_site_33626 DeepMRMD:1;iRNA_m5C:0.999536764781283 33627 chr7 142458518 142458518 1 + C T SKCM 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCTCTCATCAACGAACAGTGGGTGGTATCAGCAGGC < 41bp 1 0.516533502965836 1 0.444592416286469 experiment 0.966932994068328 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458518 synonymous SNV . 0 8 hm5C_associated_SNPs_33760 0 0 0 0 2 Cytosol 1 0.5002315894295 1 0.999536821141 hm5C_site_33627 DeepMRMD:1;iRNA_m5C:0.999536821141 33628 chr15 91448685 91448685 1 + C T SKCM 91448697 + 91448677 91448717 41 CCATCTCCCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG CCATCTCCTCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG < 41bp 1 0.252839112979404 1 0.247318655252457 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91448697 chr15:91448685 nonsynonymous SNV 0.943 1 9 hm5C_associated_SNPs_33761 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33628 DeepMRMD:1;iRNA_m5C:0.999536712157815 33629 chr1 36026527 36026527 1 + C T SKCM 36026508 + 36026488 36026528 41 CTCTTTTTGCCCCCGACAACCGTGCCCCCTGAATGCTACCG CTCTTTTTGCCCCCGACAACCGTGCCCCCTGAATGCTACTG < 41bp 1 0.212759308397994 1 0.471720278263092 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36026508 chr1:36026527 nonsynonymous SNV 0.986 2 40 hm5C_associated_SNPs_33762 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33629 DeepMRMD:1;iRNA_m5C:0.999536712157815 33630 chr3 50614589 50614589 1 + C T SKCM 50614569 + 50614549 50614589 41 CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTC CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTT < 41bp 1 0.686135383879501 1 0.0964393615722656 experiment 0.627729232240997 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614569 chr3:50614589 nonsynonymous SNV 0.467 3 41 hm5C_associated_SNPs_33763 0 0 0 0 1 Ribosome 1 0.500231644819589 1 0.999536710360821 hm5C_site_33630 DeepMRMD:1;iRNA_m5C:0.999536710360821 33631 chr3 50614589 50614589 1 + C T SKCM 50614597 + 50614577 50614617 41 CAGGAGCCATCTCCCTCAGCCTGCTGAGCCAGCTCCCCCAG CAGGAGCCATCTTCCTCAGCCTGCTGAGCCAGCTCCCCCAG < 41bp 1 0.634377718558936 1 0.356360197067261 experiment 0.731244562882128 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614597 chr3:50614589 nonsynonymous SNV 0.467 3 13 hm5C_associated_SNPs_33764 0 0 0 0 1 Ribosome 1 0.500231645034905 1 0.99953670993019 hm5C_site_33631 DeepMRMD:1;iRNA_m5C:0.99953670993019 33632 chr16 56501903 56501903 1 + T C SKCM 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAGAAAGTTCCGAAATTCTCCTGAAGGAGTTTCTTAAG < 41bp 1 0.596746736433992 1 0.872891187667847 experiment 0.806506527132015 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501903 synonymous SNV . 0 14 hm5C_associated_SNPs_33765 0 0 1 0 2 Ribosome 1 0.500231643921093 0.254217624664306 0.999536712157815 hm5C_site_33632 DeepMRMD:0.254217624664306;iRNA_m5C:0.999536712157815 33633 chr11 118516529 118516529 1 + C A SKCM 118516515 + 118516495 118516535 41 GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTCATGG GATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGATCATGG < 41bp 1 0.578252068874506 1 0.680178642272949 experiment 0.843495862250987 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118516515 chr11:118516529 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_33766 0 0 1 0 1 Cytosol 1 0.500231643921118 0.639642715454102 0.999536712157763 hm5C_site_33633 DeepMRMD:0.639642715454102;iRNA_m5C:0.999536712157763 33634 chr11 5624605 5624605 1 + C T SKCM 5624588 + 5624568 5624608 41 TACGAGAAGAGGTGACCTGCCCTATCTGCCTGGAGCTCCTA TACGAGAAGAGGTGACCTGCCCTATCTGCCTGGAGCTTCTA < 41bp 1 0.0997269722330865 1 0.0487315654754639 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5624588 chr11:5624605 synonymous SNV . 0 38 hm5C_associated_SNPs_33767 0 0 0 0 0 unknown 1 0.500231643941697 1 0.999536712116605 hm5C_site_33634 DeepMRMD:1;iRNA_m5C:0.999536712116605 33635 chr8 11679263 11679263 1 + C T SKCM 11679261 + 11679241 11679281 41 TTACGGTTTCCATTTCAGATCTCCCTTGAGTTTAGAAATCT TTACGGTTTCCATTTCAGATCTTCCTTGAGTTTAGAAATCT < 41bp 1 0.0814802616841832 1 0.0208845734596252 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11679261 chr8:11679263 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_33768 0 0 1 0 1 Cytosol 1 0.50023164392025 1 0.9995367121595 hm5C_site_33635 DeepMRMD:1;iRNA_m5C:0.9995367121595 33636 chr22 23656241 23656241 1 + C T SKCM 23656252 + 23656232 23656272 41 TTCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTC TTCCTTTTCTTTCTGGACCACCTGAAAAGGTAGCCCAGCTC < 41bp 1 0.132740993888617 1 0.486305147409439 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656252 chr22:23656241 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_33769 0 0 1 0 2 Ribosome 1 0.500231643920573 1 0.999536712158853 hm5C_site_33636 DeepMRMD:1;iRNA_m5C:0.999536712158853 33637 chr22 23656241 23656241 1 + C T SKCM 23656253 + 23656233 23656273 41 TCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT TCCTTTTCTTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT < 41bp 1 0.398625079209723 1 0.379164129495621 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656253 chr22:23656241 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_33770 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_33637 DeepMRMD:1;iRNA_m5C:0.999536712157815 33638 chr22 47290702 47290702 1 + T C SKCM 47290696 + 47290676 47290716 41 CCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGT CCAGATCCACATAGACATCCCTCGCACGAGCCCTGAAGCGT < 41bp 1 0.238728090692023 1 0.0867392122745514 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47290696 chr22:47290702 nonsynonymous SNV 0.989 1 27 hm5C_associated_SNPs_33771 0 0 1 0 2 Cytosol 1 0.500231648798683 1 0.999536702402634 hm5C_site_33638 DeepMRMD:1;iRNA_m5C:0.999536702402634 33639 chr19 30500204 30500204 1 + G A SKCM 30500196 + 30500176 30500216 41 TGGTGATAACGACCATGAGGCTTTAGGGGTTGGAGATAATT TGGTGATAACGACCATGAGGCTTTAGGGATTGGAGATAATT < 41bp 1 0.210972519064957 1 0.0894590318202972 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30500196 chr19:30500204 nonsynonymous SNV 0.331 0 29 hm5C_associated_SNPs_33772 0 0 1 0 0 Cytosol 1 0.500231643821856 1 0.999536712356289 hm5C_site_33639 DeepMRMD:1;iRNA_m5C:0.999536712356289 33640 chr17 7752275 7752275 1 + C T SKCM 7752281 + 7752261 7752301 41 CGAAGAGCCAGTCCCGGGCCCCATGACCCCCACCCAACCGC CGAAGAGCCAGTCCTGGGCCCCATGACCCCCACCCAACCGC < 41bp 1 0.0967981499816498 1 0.0785180926322937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7752281 chr17:7752275 nonsynonymous SNV 0.882 1 15 hm5C_associated_SNPs_33773 0 0 1 0 0 Cytosol 1 0.500231629007622 1 0.999536741984755 hm5C_site_33640 DeepMRMD:1;iRNA_m5C:0.999536741984755 33641 chr6 146875708 146875708 1 + C A SKCM 146875716 + 146875696 146875736 41 AGATCAAGAGACCTTGAGAGCAGAGAACAAATCCCAGTGTT AGATCAAGAGACATTGAGAGCAGAGAACAAATCCCAGTGTT < 41bp 1 0.532762633538817 1 0.705096960067749 experiment 0.934474732922366 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAB32 ENSG00000118508 CDS Human protein_coding chr6:146875716 chr6:146875708 synonymous SNV . 0 13 hm5C_associated_SNPs_33774 0 0 1 0 0 Ribosome 1 0.500231643921753 0.589806079864502 0.999536712156494 hm5C_site_33641 DeepMRMD:0.589806079864502;iRNA_m5C:0.999536712156494 33642 chr7 2411438 2411438 1 + C T SKCM 2411420 + 2411400 2411440 41 TTTTTTAAACAGGGTGTTGTCACAAATTTTGAAATTTTCCG TTTTTTAAACAGGGTGTTGTCACAAATTTTGAAATTTTTCG < 41bp 1 0.607333485842512 1 0.43220591545105 experiment 0.785333028314976 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2411420 chr7:2411438 synonymous SNV . 0 39 hm5C_associated_SNPs_33775 0 0 1 0 0 Ribosome 1 0.500231891326209 1 0.999536217347583 hm5C_site_33642 DeepMRMD:1;iRNA_m5C:0.999536217347583 33643 chr2 169551543 169551543 1 + C T SKCM 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGATGTTTTCTCAGTTTACTGATATCAAAA < 41bp 1 0.470327650408362 1 0.4825758934021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551543 synonymous SNV . 0 28 hm5C_associated_SNPs_33776 0 0 1 0 2 Endoplasmic reticulum 1 0.500231642643369 1 0.999536714713263 hm5C_site_33643 DeepMRMD:1;iRNA_m5C:0.999536714713263 33644 chr1 156761560 156761560 1 + T G SKCM 156761563 + 156761543 156761583 41 CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC CAGGAAATTGCCCCAGAGGCCTCCTTCATCGATGACGAAGC < 41bp 1 0.39103269550027 1 0.415153950452805 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156761563 chr1:156761560 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_33777 0 0 1 0 2 Ribosome 1 0.500231647153709 1 0.999536705692581 hm5C_site_33644 DeepMRMD:1;iRNA_m5C:0.999536705692581 33645 chr5 912018 912018 1 + C T SKCM 912029 + 912009 912049 41 CGTGGCCTTCGTGGACAGGGCTGACATCAAGCAGTACATTG CGTGGCCTTTGTGGACAGGGCTGACATCAAGCAGTACATTG < 41bp 1 0.362170076091564 1 0.0247178375720978 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:912029 chr5:912018 synonymous SNV . 0 10 hm5C_associated_SNPs_33778 0 0 1 0 2 Ribosome 1 0.500232697558968 1 0.999534604882064 hm5C_site_33645 DeepMRMD:1;iRNA_m5C:0.999534604882064 33646 chrX 107807122 107807122 1 + G A SKCM 107807137 + 107807117 107807157 41 TGATGGAATTCCAGGGCCACCAGGACCAAAAGGAATCAGAG TGATGAAATTCCAGGGCCACCAGGACCAAAAGGAATCAGAG < 41bp 1 0.493695723881215 1 0.753616690635681 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107807137 chrX:107807122 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_33779 0 0 1 0 0 Ribosome 1 0.500231643921092 0.492766618728638 0.999536712157815 hm5C_site_33646 DeepMRMD:0.492766618728638;iRNA_m5C:0.999536712157815 33647 chr7 142460296 142460296 1 + G A SKCM 142460282 + 142460262 142460302 41 TCTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGC TCTCTTCCTGATCCTCACAGCCGACTACCCAGACAAGCTGC < 41bp 1 0.102197042271351 1 0.249716013669968 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460282 chr7:142460296 nonsynonymous SNV 0.003 1 35 hm5C_associated_SNPs_33780 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33647 DeepMRMD:1;iRNA_m5C:0.999536712157815 33648 chr7 142460296 142460296 1 + G A SKCM 142460283 + 142460263 142460303 41 CTCTTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCA CTCTTCCTGATCCTCACAGCCGACTACCCAGACAAGCTGCA < 41bp 1 0.163464629276944 1 0.485132992267609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460283 chr7:142460296 nonsynonymous SNV 0.003 1 34 hm5C_associated_SNPs_33781 0 0 0 0 1 Cytosol 1 0.500231828112656 1 0.999536343774689 hm5C_site_33648 DeepMRMD:1;iRNA_m5C:0.999536343774689 33649 chr7 142460296 142460296 1 + G A SKCM 142460286 + 142460266 142460306 41 TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTG TTCCTGATCCTCACAGCCGACTACCCAGACAAGCTGCAGTG < 41bp 1 0.136182650215182 1 0.316208958625793 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460286 chr7:142460296 nonsynonymous SNV 0.003 1 31 hm5C_associated_SNPs_33782 0 0 0 0 1 Cytosol 1 0.500231643921132 1 0.999536712157736 hm5C_site_33649 DeepMRMD:1;iRNA_m5C:0.999536712157736 33650 chr7 142460296 142460296 1 + G A SKCM 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGACTACCCAGACAAGCTGCAGTGCCT < 41bp 1 0.121874895531589 1 0.334520399570465 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460296 nonsynonymous SNV 0.003 1 28 hm5C_associated_SNPs_33783 0 0 0 0 1 Cytosol 1 0.500231618391989 1 0.999536763216022 hm5C_site_33650 DeepMRMD:1;iRNA_m5C:0.999536763216022 33651 chr7 142460296 142460296 1 + G A SKCM 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGACAAGCTGCAGTGCCTG < 41bp 1 0.428181020140864 1 0.302489429712296 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460296 nonsynonymous SNV 0.003 1 27 hm5C_associated_SNPs_33784 0 0 0 0 1 Cytosol 1 0.500231643571133 1 0.999536712857733 hm5C_site_33651 DeepMRMD:1;iRNA_m5C:0.999536712857733 33652 chr7 142460296 142460296 1 + G A SKCM 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACAAGCTGCAGTGCCTGG < 41bp 1 0.354926623547272 1 0.45653709769249 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460296 nonsynonymous SNV 0.003 1 26 hm5C_associated_SNPs_33785 0 0 0 0 1 Cytosol 1 0.500231643921129 1 0.999536712157741 hm5C_site_33652 DeepMRMD:1;iRNA_m5C:0.999536712157741 33653 chr7 142460296 142460296 1 + G A SKCM 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACAAGCTGCAGTGCCTGGATGC < 41bp 1 0.330566383600439 1 0.205643832683563 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460296 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_33786 0 0 0 0 1 Cytosol 1 0.500231648659197 1 0.999536702681606 hm5C_site_33653 DeepMRMD:1;iRNA_m5C:0.999536702681606 33654 chr7 142460296 142460296 1 + G A SKCM 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACAAGCTGCAGTGCCTGGATGCTCCTGTG < 41bp 1 0.287866116076759 1 0.197180032730103 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460296 nonsynonymous SNV 0.003 1 15 hm5C_associated_SNPs_33788 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33654 DeepMRMD:1;iRNA_m5C:0.999536712157815 33655 chr7 142460296 142460296 1 + G A SKCM 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACAAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG < 41bp 1 0.182246990076213 1 0.0649911761283875 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460296 nonsynonymous SNV 0.003 1 10 hm5C_associated_SNPs_33789 0 0 0 0 1 Cytosol 1 0.500231645925839 1 0.999536708148322 hm5C_site_33655 DeepMRMD:1;iRNA_m5C:0.999536708148322 33656 chr7 142460296 142460296 1 + G A SKCM 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CAAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.417418620821104 1 0.284577757120132 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460296 nonsynonymous SNV 0.003 1 2 hm5C_associated_SNPs_33790 0 0 0 0 1 Cytosol 1 0.50023472936797 1 0.999530541264059 hm5C_site_33656 DeepMRMD:1;iRNA_m5C:0.999530541264059 33657 chr16 67671679 67671679 1 + C T SKCM 67671677 + 67671657 67671697 41 AAAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAG AAAAAGAGCCAGATGCTGAGCCTGCAGAGGGAGAGGAAGAG < 41bp 1 0.0874774426049097 1 0.149682521820068 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671677 chr16:67671679 synonymous SNV . 0 23 hm5C_associated_SNPs_33791 0 0 1 0 2 Nucleus 1 0.50023165256387 1 0.99953669487226 hm5C_site_33657 DeepMRMD:1;iRNA_m5C:0.99953669487226 33658 chr16 67671679 67671679 1 + C T SKCM 67671681 + 67671661 67671701 41 AGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGAGG AGAGCCAGATGCTGAGCCTGCAGAGGGAGAGGAAGAGGAGG < 41bp 1 0.663482466574785 1 0.547104477882385 experiment 0.67303506685043 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671681 chr16:67671679 synonymous SNV . 0 19 hm5C_associated_SNPs_33792 0 0 1 0 2 Nucleus 1 0.500231643921092 0.90579104423523 0.999536712157815 hm5C_site_33658 DeepMRMD:0.90579104423523;iRNA_m5C:0.999536712157815 33659 chr5 5463392 5463392 1 + T C SKCM 5463400 + 5463380 5463420 41 CTCATCACATGCTTCAGAACCAACCCCACAAGCAGCTGCCT CTCATCACATGCCTCAGAACCAACCCCACAAGCAGCTGCCT < 41bp 1 0.220423739403907 1 0.375604212284088 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ICE1 ENSG00000164151 CDS Human protein_coding chr5:5463400 chr5:5463392 synonymous SNV . 0 13 hm5C_associated_SNPs_33793 0 0 1 0 0 Nucleus 1 0.500231644359584 1 0.999536711280833 hm5C_site_33659 DeepMRMD:1;iRNA_m5C:0.999536711280833 33660 chr2 102441810 102441810 1 + C T SKCM 102441795 + 102441775 102441815 41 CTATAGCTTGTTATGGAGTTCTGTGGGGCTGGGTCCATTAC CTATAGCTTGTTATGGAGTTCTGTGGGGCTGGGTCTATTAC < 41bp 1 0.317101752740017 1 0.173393815755844 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102441795 chr2:102441810 synonymous SNV . 0 36 hm5C_associated_SNPs_33794 0 0 1 0 0 Ribosome 1 0.498475310238116 1 1 hm5C_site_33660 DeepMRMD:1;iRNA_m5C:1 33661 chr2 232576099 232576099 1 + T C SKCM 232576110 + 232576090 232576130 41 GGCAGAAAATGGAAGAGACGCCCCTGCTAACGGGAATGCTG GGCAGAAAACGGAAGAGACGCCCCTGCTAACGGGAATGCTG < 41bp 1 0.230288595781899 1 0.0708431899547577 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232576110 chr2:232576099 nonsynonymous SNV . 0 10 hm5C_associated_SNPs_33795 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33661 DeepMRMD:1;iRNA_m5C:0.999536712157815 33662 chr22 31485810 31485810 1 + C T SKCM 31485804 + 31485784 31485824 41 CTGCGAGCCCCACCTGGGAGCACATCCAGCTCACCTGCCTC CTGCGAGCCCCACCTGGGAGCACATCTAGCTCACCTGCCTC < 41bp 1 0.22617658765555 1 0.164391249418259 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMTN ENSG00000183963 CDS Human protein_coding chr22:31485804 chr22:31485810 synonymous SNV . 0 27 hm5C_associated_SNPs_33796 0 0 1 0 0 Cytosol 1 0.500231643920415 1 0.99953671215917 hm5C_site_33662 DeepMRMD:1;iRNA_m5C:0.99953671215917 33663 chr8 107752590 107752590 1 + C T SKCM 107752575 + 107752555 107752595 41 ACTTTGTTTTCTAAAGCTTACCAAGCATCTTCCACCAAGAA ACTTTGTTTTCTAAAGCTTACCAAGCATCTTCCACTAAGAA < 41bp 1 0.0543972317381117 1 0.0817886590957642 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752575 chr8:107752590 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_33798 0 0 1 0 1 chromatin 1 0.500232079387746 1 0.999535841224508 hm5C_site_33663 DeepMRMD:1;iRNA_m5C:0.999535841224508 33664 chr15 72057461 72057461 1 + C T SKCM 72057443 + 72057423 72057463 41 ACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTCCTG ACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTCTTG < 41bp 1 0.0235508074955906 1 0.0121984481811523 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control THSD4 ENSG00000187720 CDS Human protein_coding chr15:72057443 chr15:72057461 synonymous SNV . 0 39 hm5C_associated_SNPs_33799 0 0 0 0 1 Nucleus 1 0.500231643901682 1 0.999536712196635 hm5C_site_33664 DeepMRMD:1;iRNA_m5C:0.999536712196635 33665 chr17 79408931 79408931 1 + C T SKCM 79408935 + 79408915 79408955 41 CTTCCCCAGCGTGGCCCGGGCCGCCCCTGCCCACCCCATGG CTTCCCCAGCGTGGCCTGGGCCGCCCCTGCCCACCCCATGG < 41bp 1 0.131380620158021 1 0.171023607254028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79408935 chr17:79408931 nonsynonymous SNV 0.430 3 17 hm5C_associated_SNPs_33800 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_33665 DeepMRMD:1;iRNA_m5C:0.999536712157815 33666 chr7 44741180 44741180 1 + C T SKCM 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCTGAGGCCAGATCCAGCTTTGATGAGATGCTTC < 41bp 1 0.20203740148543 1 0.573384523391724 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741180 synonymous SNV . 0 10 hm5C_associated_SNPs_33802 0 0 1 0 2 Nucleus 1 0.500231656163765 0.853230953216552 0.999536687672471 hm5C_site_33666 DeepMRMD:0.853230953216552;iRNA_m5C:0.999536687672471 33667 chr12 57597268 57597268 1 + A G SKCM 57597276 + 57597256 57597296 41 GACGCCGACTGCATGGACGGCAGCGACGAGGAGGCCTGCGG GACGCCGACTGCGTGGACGGCAGCGACGAGGAGGCCTGCGG < 41bp 1 0.277490355243482 1 0.331799685955048 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57597276 chr12:57597268 nonsynonymous SNV 0.990 1 13 hm5C_associated_SNPs_33803 0 0 1 0 2 Exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_33667 DeepMRMD:1;iRNA_m5C:0.999536712157814 33668 chr1 206653239 206653239 1 + C T SKCM 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGACGTCCCCAAGTTCGTCTCCAAAGTGGACCTGCAGGCGG < 41bp 1 0.513756386424229 1 0.352956026792526 experiment 0.972487227151543 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653239 nonsynonymous SNV 0.970 2 20 hm5C_associated_SNPs_33804 0 0 1 0 2 Cytosol 1 0.500231648839318 1 0.999536702321363 hm5C_site_33668 DeepMRMD:1;iRNA_m5C:0.999536702321363 33669 chr17 47004384 47004384 1 + G T SKCM 47004386 + 47004366 47004406 41 CCCTCTTGATGCGCCTGGGACTGATACGTCAGAAAGTGCTG CCCTCTTGATGCGCCTGGTACTGATACGTCAGAAAGTGCTG < 41bp 1 0.308709951675248 1 0.0837374925613403 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2Z ENSG00000159202 CDS Human protein_coding chr17:47004386 chr17:47004384 nonsynonymous SNV 0.999 0 19 hm5C_associated_SNPs_33805 0 0 1 0 1 Ribosome 1 0.500230142399348 1 0.999539715201305 hm5C_site_33669 DeepMRMD:1;iRNA_m5C:0.999539715201305 33670 chr11 61630777 61630777 1 + T C SKCM 61630766 + 61630746 61630786 41 TCTTGCAGGTTCCTGGAGAGCCACTGGTTTGTGTGGGTCAC TCTTGCAGGTTCCTGGAGAGCCACTGGTTTGCGTGGGTCAC < 41bp 1 0.19355004876393 1 0.0792540013790131 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61630766 chr11:61630777 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_33806 0 0 1 0 2 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_33670 DeepMRMD:1;iRNA_m5C:0.999536712157808 33671 chr11 119050802 119050802 1 + C T SKCM 119050815 + 119050795 119050835 41 CGCTTCTCCGCTGAGGTGCTCAGCTCCCTGCGTCAGCTCAA CGCTTCTTCGCTGAGGTGCTCAGCTCCCTGCGTCAGCTCAA < 41bp 1 0.341752392372153 1 0.16160973906517 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119050815 chr11:119050802 nonsynonymous SNV 0.717 3 8 hm5C_associated_SNPs_33807 0 0 1 0 0 exosome 1 0.500231643921099 1 0.999536712157802 hm5C_site_33671 DeepMRMD:1;iRNA_m5C:0.999536712157802 33672 chr19 14024303 14024303 1 + C T SKCM 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGTCCGGCGT < 41bp 1 0.255359013860117 1 0.137105971574783 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024303 synonymous SNV . 0 34 hm5C_associated_SNPs_33808 0 0 0 0 1 chromatin 1 0.500231407770101 1 0.999537184459798 hm5C_site_33672 DeepMRMD:1;iRNA_m5C:0.999537184459798 33673 chr11 48134417 48134417 1 + G A SKCM 48134404 + 48134384 48134424 41 CTTTCATAAACAGAATGGAACTGGAACACCTCAGGTGGAAA CTTTCATAAACAGAATGGAACTGGAACACCTCAAGTGGAAA < 41bp 1 0.522150989613324 1 0.415155529975891 experiment 0.955698020773352 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48134404 chr11:48134417 synonymous SNV . 0 34 hm5C_associated_SNPs_33809 0 0 1 0 0 Endoplasmic reticulum 1 0.50023166350801 1 0.99953667298398 hm5C_site_33673 DeepMRMD:1;iRNA_m5C:0.99953667298398 33674 chr16 83813691 83813691 1 + T G SKCM 83813711 + 83813691 83813731 41 TGTAGTCATTTTGGGAGCATCAGATAAGGATCTTCACCCGA GGTAGTCATTTTGGGAGCATCAGATAAGGATCTTCACCCGA < 41bp 1 0.258816772088779 1 0.598148763179779 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:83813711 chr16:83813691 nonsynonymous SNV 0.684 0 1 hm5C_associated_SNPs_33810 0 0 0 0 0 Nucleus 1 0.500231643920894 0.803702473640442 0.999536712158211 hm5C_site_33674 DeepMRMD:0.803702473640442;iRNA_m5C:0.999536712158211 33675 chr22 23656240 23656240 1 + C T SKCM 23656252 + 23656232 23656272 41 TTCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTC TTCCTTTTTCTTCTGGACCACCTGAAAAGGTAGCCCAGCTC < 41bp 1 0.136992023436007 1 0.419651985168457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656252 chr22:23656240 synonymous SNV . 0 9 hm5C_associated_SNPs_33812 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_33675 DeepMRMD:1;iRNA_m5C:0.999536712157814 33676 chr22 23656240 23656240 1 + C T SKCM 23656253 + 23656233 23656273 41 TCCTTTTCCTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT TCCTTTTTCTTCTGGACCACCTGAAAAGGTAGCCCAGCTCT < 41bp 1 0.426047294239468 1 0.41056877374649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23656253 chr22:23656240 synonymous SNV . 0 8 hm5C_associated_SNPs_33813 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33676 DeepMRMD:1;iRNA_m5C:0.999536712157815 33677 chr22 22040809 22040809 1 + C T SKCM 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCATCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.295688277457143 1 0.362764030694962 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040809 nonsynonymous SNV 0.890 4 5 hm5C_associated_SNPs_33814 0 0 1 0 2 Cytosol 1 0.500231644878182 1 0.999536710243636 hm5C_site_33677 DeepMRMD:1;iRNA_m5C:0.999536710243636 33678 chr11 65978657 65978657 1 + G A SKCM 65978638 + 65978618 65978658 41 TTAAGCGAGATGCCAACAAGCTGCAGATCATGCTGCAAAGG TTAAGCGAGATGCCAACAAGCTGCAGATCATGCTGCAAAAG < 41bp 1 0.628145041432555 1 0.372699856758118 experiment 0.743709917134889 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978638 chr11:65978657 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_33815 0 0 1 0 2 Cytosol 1 0.500231644006462 1 0.999536711987075 hm5C_site_33678 DeepMRMD:1;iRNA_m5C:0.999536711987075 33679 chr7 23339025 23339025 1 + G A SKCM 23339007 + 23338987 23339027 41 CGTGTGGCGCGGCTGCTCGCCCCACTAATGTGGCGCAGGGC CGTGTGGCGCGGCTGCTCGCCCCACTAATGTGGCGCAGAGC < 41bp 1 0.185527900982692 1 0.276436597108841 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALSU1 ENSG00000156928 CDS Human protein_coding chr7:23339007 chr7:23339025 synonymous SNV . 0 39 hm5C_associated_SNPs_33816 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33679 DeepMRMD:1;iRNA_m5C:0.999536712157815 33680 chr19 41078007 41078007 1 + A C SKCM 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCGGGAGCCCACACGGTGGGG < 41bp 1 0.39256096769184 1 0.904862284660339 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078007 nonsynonymous SNV 0.950 0 29 hm5C_associated_SNPs_33817 0 0 0 0 2 cytosol 1 0.500231643737413 0.190275430679322 0.999536712525174 hm5C_site_33680 DeepMRMD:0.190275430679322;iRNA_m5C:0.999536712525174 33681 chr13 77570096 77570096 1 + G A SKCM 77570092 + 77570072 77570112 41 ATTAACTGGCAAGAACTACACAATGGAATGGTATGAACTTT ATTAACTGGCAAGAACTACACAATAGAATGGTATGAACTTT < 41bp 1 0.642735245020702 1 0.269793629646301 experiment 0.714529509958596 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570092 chr13:77570096 nonsynonymous SNV 0.962 1 25 hm5C_associated_SNPs_33818 0 0 1 0 1 Endoplasmic reticulum 1 0.500231687086039 1 0.999536625827923 hm5C_site_33681 DeepMRMD:1;iRNA_m5C:0.999536625827923 33682 chr22 22040810 22040810 1 + C T SKCM 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACTTCCACCGCGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.317697183715534 1 0.324733138084412 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040810 synonymous SNV . 0 6 hm5C_associated_SNPs_33819 0 0 1 0 2 Cytosol 1 0.500231643953042 1 0.999536712093916 hm5C_site_33682 DeepMRMD:1;iRNA_m5C:0.999536712093916 33683 chr12 107237704 107237704 1 + C T SKCM 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCGAAACATTCGAAAATTTCTCAAAGA < 41bp 1 0.072561605488153 1 0.274057894945145 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237704 synonymous SNV . 0 24 hm5C_associated_SNPs_33820 0 0 0 1 2 Nucleus 1 0.500231643931837 1 0.999536712136327 hm5C_site_33683 DeepMRMD:1;iRNA_m5C:0.999536712136327 33684 chr3 58118608 58118608 1 + G A SKCM 58118613 + 58118593 58118633 41 CACCCCATCTCAGGAGGGACCTTACATGGTCTCAGTTAAAT CACCCCATCTCAGGAAGGACCTTACATGGTCTCAGTTAAAT < 41bp 1 0.0161153939021759 1 0.20160374045372 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58118613 chr3:58118608 synonymous SNV . 0 16 hm5C_associated_SNPs_33821 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33684 DeepMRMD:1;iRNA_m5C:0.999536712157815 33685 chr19 47763920 47763920 1 + C T SKCM 47763913 + 47763893 47763933 41 CCAGGGGCCAGCAAGGGGGGCCGGACTCCTCCACAGCAGGG CCAGGGGCCAGCAAGGGGGGCCGGACTTCTCCACAGCAGGG < 41bp 1 0.468223145444207 1 0.479200810194016 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763913 chr19:47763920 nonsynonymous SNV 0.045 0 28 hm5C_associated_SNPs_33822 0 0 0 0 1 chromatin 1 0.500231643872402 1 0.999536712255196 hm5C_site_33685 DeepMRMD:1;iRNA_m5C:0.999536712255196 33686 chr22 32234801 32234801 1 + C T SKCM 32234816 + 32234796 32234836 41 CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG CGCCCTCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG < 41bp 1 0.149570943331345 1 0.0857721269130707 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32234816 chr22:32234801 nonsynonymous SNV 0.097 3 6 hm5C_associated_SNPs_33823 0 0 0 0 1 chromatin 1 0.500231643921748 1 0.999536712156503 hm5C_site_33686 DeepMRMD:1;iRNA_m5C:0.999536712156503 33687 chr19 41807520 41807520 1 + C T SKCM 41807534 + 41807514 41807554 41 TTTGTCCCACTGACGAGGACCTAAAAGACCGAACAATAAAG TTTGTCTCACTGACGAGGACCTAAAAGACCGAACAATAAAG < 41bp 1 0.317318042081911 1 0.199053734540939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41807534 chr19:41807520 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_33825 0 0 1 0 2 Cytosol 1 0.500231638211701 1 0.999536723576598 hm5C_site_33687 DeepMRMD:1;iRNA_m5C:0.999536723576598 33688 chr1 10239580 10239580 1 + C T SKCM 10239562 + 10239542 10239582 41 ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCCCTT ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCCTTT < 41bp 1 0.421409098464792 1 0.639266788959503 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10239562 chr1:10239580 synonymous SNV . 0 39 hm5C_associated_SNPs_33826 0 0 1 0 1 Cytosol 1 0.500231643921092 0.721466422080994 0.999536712157815 hm5C_site_33688 DeepMRMD:0.721466422080994;iRNA_m5C:0.999536712157815 33689 chr1 10239579 10239579 1 + C T SKCM 10239562 + 10239542 10239582 41 ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCCCTT ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCTCTT < 41bp 1 0.424179014304765 1 0.681045651435852 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10239562 chr1:10239579 nonsynonymous SNV 1.000 5 38 hm5C_associated_SNPs_33827 0 0 1 0 1 Cytosol 1 0.500231643921092 0.637908697128296 0.999536712157815 hm5C_site_33689 DeepMRMD:0.637908697128296;iRNA_m5C:0.999536712157815 33690 chr19 42853729 42853729 1 + C T SKCM 42853746 + 42853726 42853766 41 TTCCCTCTGCCTGGGCGGGACCACAAGTATGCAGTAGAGAT TTCTCTCTGCCTGGGCGGGACCACAAGTATGCAGTAGAGAT < 41bp 1 0.12000385176611 1 0.154306352138519 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42853746 chr19:42853729 nonsynonymous SNV 0.748 0 4 hm5C_associated_SNPs_33828 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920917 1 0.999536712158165 hm5C_site_33690 DeepMRMD:1;iRNA_m5C:0.999536712158165 33691 chr1 109804140 109804140 1 + C T SKCM 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGTCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG < 41bp 1 0.240129208322536 1 0.275872051715851 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804140 nonsynonymous SNV 0.935 3 5 hm5C_associated_SNPs_33829 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_33691 DeepMRMD:1;iRNA_m5C:0.999536712157815 33692 chr9 137708903 137708903 1 + C T SKCM 137708906 + 137708886 137708926 41 TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG TACTGGTGAACCAGGTCTATCGGGGCCTCCAGGAAAAAGGG < 41bp 1 0.432401163792795 1 0.904654443264008 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137708906 chr9:137708903 nonsynonymous SNV 0.082 3 18 hm5C_associated_SNPs_33831 0 0 0 0 1 Nucleus 1 0.500231643921093 0.190691113471984 0.999536712157815 hm5C_site_33692 DeepMRMD:0.190691113471984;iRNA_m5C:0.999536712157815 33693 chr12 54675591 54675591 1 + C T SKCM 54675598 + 54675578 54675618 41 GGTAATGAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTG GGTAATGAGAGATTCAAACACCAAGCGCTCCAGGGGCTTTG < 41bp 1 0.350568151337861 1 0.298795104026794 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675598 chr12:54675591 nonsynonymous SNV 0.996 4 14 hm5C_associated_SNPs_33832 0 0 1 1 0 Cytosol 1 0.500231643921085 1 0.99953671215783 hm5C_site_33693 DeepMRMD:1;iRNA_m5C:0.99953671215783 33694 chr12 54675591 54675591 1 + C T SKCM 54675599 + 54675579 54675619 41 GTAATGAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTGG GTAATGAGAGATTCAAACACCAAGCGCTCCAGGGGCTTTGG < 41bp 1 0.526009274669629 1 0.182909071445465 experiment 0.947981450660743 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675599 chr12:54675591 nonsynonymous SNV 0.996 4 13 hm5C_associated_SNPs_33833 0 0 1 1 0 Cytosol 1 0.500231643263121 1 0.999536713473759 hm5C_site_33694 DeepMRMD:1;iRNA_m5C:0.999536713473759 33695 chr19 50155897 50155897 1 + C T SKCM 50155914 + 50155894 50155934 41 GATCGGCGCCGCTCGGGGGCCGCCTCCTCCTCCTCCTCTTC GATTGGCGCCGCTCGGGGGCCGCCTCCTCCTCCTCCTCTTC < 41bp 1 0.311492510903796 1 0.0679184198379517 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50155914 chr19:50155897 nonsynonymous SNV 0.738 3 4 hm5C_associated_SNPs_33835 0 0 1 0 0 Cytosol 1 0.500231643923533 1 0.999536712152933 hm5C_site_33695 DeepMRMD:1;iRNA_m5C:0.999536712152933 33696 chr12 132516578 132516578 1 + C T SKCM 132516568 + 132516548 132516588 41 CTCCACTCACAGCCGTACCACAGGTATAAACCTTGTAGAGG CTCCACTCACAGCCGTACCACAGGTATAAATCTTGTAGAGG < 41bp 1 0.192628574140955 1 0.129962801933289 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132516568 chr12:132516578 synonymous SNV . 0 31 hm5C_associated_SNPs_33836 0 0 1 0 1 Cytosol 1 0.500231797756469 1 0.999536404487062 hm5C_site_33696 DeepMRMD:1;iRNA_m5C:0.999536404487062 33697 chr19 36278137 36278137 1 + C T SKCM 36278132 + 36278112 36278152 41 TCCTGCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC TCCTGCGCCCTGGGGGTGCCCCACCTCCGCCCCCTAAGAAC < 41bp 1 0.215682303238311 1 0.323006272315979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278132 chr19:36278137 synonymous SNV . 0 26 hm5C_associated_SNPs_33837 0 0 0 0 1 chromatin 1 0.500231644280524 1 0.999536711438952 hm5C_site_33697 DeepMRMD:1;iRNA_m5C:0.999536711438952 33698 chr1 114215982 114215982 1 + C T SKCM 114215980 + 114215960 114216000 41 CAGTAGAGCTGGAGAGAGGCCCCCGGGGCTTTGGATTCAGC CAGTAGAGCTGGAGAGAGGCCCTCGGGGCTTTGGATTCAGC < 41bp 1 0.0886160500845354 1 0.166339129209518 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114215980 chr1:114215982 synonymous SNV . 0 23 hm5C_associated_SNPs_33838 0 0 0 0 1 Cytosol 1 0.500231702216145 1 0.99953659556771 hm5C_site_33698 DeepMRMD:1;iRNA_m5C:0.99953659556771 33699 chr2 153471384 153471384 1 + G A SKCM 153471368 + 153471348 153471388 41 CCTATTCTGGTTTTTAGAAGCTGAAACACACTGAGAGTGAC CCTATTCTGGTTTTTAGAAGCTGAAACACACTGAGAATGAC < 41bp 1 0.393117536095541 1 0.75548380613327 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153471368 chr2:153471384 nonsynonymous SNV 0.995 5 37 hm5C_associated_SNPs_33839 0 0 1 0 1 Ribosome 1 0.500231643921092 0.48903238773346 0.999536712157815 hm5C_site_33699 DeepMRMD:0.48903238773346;iRNA_m5C:0.999536712157815 33700 chr12 53673625 53673625 1 + C T SKCM 53673618 + 53673598 53673638 41 CCTGCCACATCACCCAGCTCCTCCTGACCCTCGGCTGTCCC CCTGCCACATCACCCAGCTCCTCCTGATCCTCGGCTGTCCC < 41bp 1 0.248323698143507 1 0.115392655134201 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53673618 chr12:53673625 nonsynonymous SNV 0.136 0 28 hm5C_associated_SNPs_33840 0 0 1 0 1 Nucleus 1 0.500231643921286 1 0.999536712157428 hm5C_site_33700 DeepMRMD:1;iRNA_m5C:0.999536712157428 33701 chr5 71493387 71493387 1 + C T SKCM 71493379 + 71493359 71493399 41 AAAGTTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATC AAAGTTTTGTCTCCTTTACGCAGCCCGCTCCTCATTGGATC < 41bp 1 0.184233644797178 1 0.112873911857605 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493379 chr5:71493387 nonsynonymous SNV 0.625 2 29 hm5C_associated_SNPs_33841 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_33701 DeepMRMD:1;iRNA_m5C:0.999536712157816 33702 chr5 71493387 71493387 1 + C T SKCM 71493383 + 71493363 71493403 41 TTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATCCGAG TTTTGTCTCCTTTACGCAGCCCGCTCCTCATTGGATCCGAG < 41bp 1 0.0591629994471366 1 0.133030652999878 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493383 chr5:71493387 nonsynonymous SNV 0.625 2 25 hm5C_associated_SNPs_33842 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33702 DeepMRMD:1;iRNA_m5C:0.999536712157815 33703 chr16 19548854 19548854 1 + C T SKCM 19548865 + 19548845 19548885 41 AAAAAGATACCCTAAGGGATCTGGCTTCGTTAACAAGAATA AAAAAGATATCCTAAGGGATCTGGCTTCGTTAACAAGAATA < 41bp 1 0.401904664022124 1 0.293170064687729 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCP110 ENSG00000103540 CDS Human protein_coding chr16:19548865 chr16:19548854 synonymous SNV . 0 10 hm5C_associated_SNPs_33843 0 0 1 0 1 Cytosol 1 0.500231643921168 1 0.999536712157665 hm5C_site_33703 DeepMRMD:1;iRNA_m5C:0.999536712157665 33704 chr6 133844294 133844294 1 + A T SKCM 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGGAGGTGCTTTCCCCATTGAGAATTTTTACAGTG < 41bp 1 0.103731029312881 1 0.322654873132706 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844294 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_33844 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33704 DeepMRMD:1;iRNA_m5C:0.999536712157815 33705 chr6 133844294 133844294 1 + A T SKCM 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGGAGGTGCTTTCCCCATTGAGAATTTTTACAGTGC < 41bp 1 0.0718494222176203 1 0.163466393947601 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844294 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_33845 0 0 0 0 1 Cytosol 1 0.500231643922633 1 0.999536712154733 hm5C_site_33705 DeepMRMD:1;iRNA_m5C:0.999536712154733 33706 chr7 142459673 142459673 1 + G A SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGAAA < 41bp 1 0.678179376741136 1 0.120801448822021 experiment 0.643641246517727 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459673 synonymous SNV . 0 39 hm5C_associated_SNPs_33846 0 0 0 0 1 Cytosol 1 0.500231643912217 1 0.999536712175565 hm5C_site_33706 DeepMRMD:1;iRNA_m5C:0.999536712175565 33707 chr7 142459673 142459673 1 + G A SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTGGAGGGAAATGAGCAGTT < 41bp 1 0.528874854363218 1 0.347451388835907 experiment 0.942250291273564 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459673 synonymous SNV . 0 30 hm5C_associated_SNPs_33848 0 0 0 0 1 Cytosol 1 0.500232083919894 1 0.999535832160211 hm5C_site_33707 DeepMRMD:1;iRNA_m5C:0.999535832160211 33708 chr7 142459673 142459673 1 + G A SKCM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGAAATGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.473142444228215 1 0.280224680900574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459673 synonymous SNV . 0 14 hm5C_associated_SNPs_33849 0 0 0 0 1 Cytosol 1 0.500231643919233 1 0.999536712161534 hm5C_site_33708 DeepMRMD:1;iRNA_m5C:0.999536712161534 33709 chr7 142459673 142459673 1 + G A SKCM 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGAAATGAGCAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.60032372534883 1 0.0433344542980194 experiment 0.799352549302341 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459673 synonymous SNV . 0 9 hm5C_associated_SNPs_33850 0 0 0 0 1 Cytosol 1 0.500231643921067 1 0.999536712157867 hm5C_site_33709 DeepMRMD:1;iRNA_m5C:0.999536712157867 33710 chr7 142459673 142459673 1 + G A SKCM 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGAAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG < 41bp 1 0.655664969756066 1 0.296283066272736 experiment 0.688670060487868 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459673 synonymous SNV . 0 6 hm5C_associated_SNPs_33851 0 0 0 0 1 Cytosol 1 0.500231511130917 1 0.999536977738165 hm5C_site_33710 DeepMRMD:1;iRNA_m5C:0.999536977738165 33711 chr7 142459673 142459673 1 + G A SKCM 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC AAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC < 41bp 1 0.549288847055328 1 0.0414919555187225 experiment 0.901422305889344 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459673 synonymous SNV . 0 1 hm5C_associated_SNPs_33852 0 0 0 0 1 Cytosol 1 0.500231795769493 1 0.999536408461015 hm5C_site_33711 DeepMRMD:1;iRNA_m5C:0.999536408461015 33712 chr1 201185664 201185664 1 + G A SKCM 201185656 + 201185636 201185676 41 GCGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC GCGTCTGCCTCCGCTGGCGGCCCCCAAGAGACAATGGGGGC < 41bp 1 0.0293127628418435 1 0.279846608638763 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185656 chr1:201185664 synonymous SNV . 0 29 hm5C_associated_SNPs_33853 0 0 0 0 1 exosome 1 0.500231643920738 1 0.999536712158524 hm5C_site_33712 DeepMRMD:1;iRNA_m5C:0.999536712158524 33713 chr1 201185664 201185664 1 + G A SKCM 201185657 + 201185637 201185677 41 CGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC CGTCTGCCTCCGCTGGCGGCCCCCAAGAGACAATGGGGGCC < 41bp 1 0.17281371029336 1 0.371734142303467 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185657 chr1:201185664 synonymous SNV . 0 28 hm5C_associated_SNPs_33854 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_33713 DeepMRMD:1;iRNA_m5C:0.999536712157814 33714 chr1 201185664 201185664 1 + G A SKCM 201185658 + 201185638 201185678 41 GTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCG GTCTGCCTCCGCTGGCGGCCCCCAAGAGACAATGGGGGCCG < 41bp 1 0.28912730060149 1 0.455865353345871 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185658 chr1:201185664 synonymous SNV . 0 27 hm5C_associated_SNPs_33855 0 0 0 0 1 exosome 1 0.500231641030716 1 0.999536717938567 hm5C_site_33714 DeepMRMD:1;iRNA_m5C:0.999536717938567 33715 chr1 201185664 201185664 1 + G A SKCM 201185659 + 201185639 201185679 41 TCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGG TCTGCCTCCGCTGGCGGCCCCCAAGAGACAATGGGGGCCGG < 41bp 1 0.0993343289840726 1 0.543710291385651 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185659 chr1:201185664 synonymous SNV . 0 26 hm5C_associated_SNPs_33856 0 0 0 0 1 exosome 1 0.500231643921092 0.912579417228698 0.999536712157815 hm5C_site_33715 DeepMRMD:0.912579417228698;iRNA_m5C:0.999536712157815 33716 chr1 201185664 201185664 1 + G A SKCM 201185660 + 201185640 201185680 41 CTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGGA CTGCCTCCGCTGGCGGCCCCCAAGAGACAATGGGGGCCGGA < 41bp 1 0.597678155390147 1 0.848706364631653 experiment 0.804643689219707 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185660 chr1:201185664 synonymous SNV . 0 25 hm5C_associated_SNPs_33857 0 0 0 0 1 exosome 1 0.500231643215032 0.302587270736694 0.999536713569936 hm5C_site_33716 DeepMRMD:0.302587270736694;iRNA_m5C:0.999536713569936 33717 chr1 201185664 201185664 1 + G A SKCM 201185676 + 201185656 201185696 41 CCCCCAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGT CCCCCAAGAGACAATGGGGGCCGGACTGTAGAGTGCTACGT < 41bp 1 0.300209835616781 1 0.173010021448135 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185676 chr1:201185664 synonymous SNV . 0 9 hm5C_associated_SNPs_33858 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33717 DeepMRMD:1;iRNA_m5C:0.999536712157815 33718 chr1 201185664 201185664 1 + G A SKCM 201185677 + 201185657 201185697 41 CCCCAAGGGACAATGGGGGCCGGACTGTAGAGTGCTACGTG CCCCAAGAGACAATGGGGGCCGGACTGTAGAGTGCTACGTG < 41bp 1 0.129225172416135 1 0.138582736253738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185677 chr1:201185664 synonymous SNV . 0 8 hm5C_associated_SNPs_33859 0 0 0 0 1 exosome 1 0.500231643917736 1 0.999536712164528 hm5C_site_33718 DeepMRMD:1;iRNA_m5C:0.999536712164528 33719 chr16 50342258 50342258 1 + C T SKCM 50342243 + 50342223 50342263 41 TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGTGTCCTTCG TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGTGTTCTTCG < 41bp 1 0.489099588407648 1 0.323298215866089 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50342243 chr16:50342258 nonsynonymous SNV 0.997 1 36 hm5C_associated_SNPs_33860 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33719 DeepMRMD:1;iRNA_m5C:0.999536712157815 33720 chr11 65978617 65978617 1 + C T SKCM 65978630 + 65978610 65978650 41 TCATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGC TCATTTCTTTAAGCGAGATGCCAACAAGCTGCAGATCATGC < 41bp 1 0.0125151861635478 1 0.0916063487529755 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978630 chr11:65978617 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_33861 0 0 1 0 1 Cytosol 1 0.500231643929471 1 0.999536712141058 hm5C_site_33720 DeepMRMD:1;iRNA_m5C:0.999536712141058 33721 chr11 65978617 65978617 1 + C T SKCM 65978631 + 65978611 65978651 41 CATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT CATTTCTTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT < 41bp 1 0.276069205781007 1 0.415605783462524 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978631 chr11:65978617 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_33862 0 0 1 0 1 Cytosol 1 0.500231643444516 1 0.999536713110968 hm5C_site_33721 DeepMRMD:1;iRNA_m5C:0.999536713110968 33722 chr18 77475254 77475254 1 + C T SKCM 77475248 + 77475228 77475268 41 CTCATCTACCTGGAGGAGATCCTGGTCCGTGTACACACTGA CTCATCTACCTGGAGGAGATCCTGGTTCGTGTACACACTGA < 41bp 1 0.155837883816296 1 0.269387036561966 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77475248 chr18:77475254 synonymous SNV . 0 27 hm5C_associated_SNPs_33863 0 0 1 0 0 chromatin 1 0.500231643920981 1 0.999536712158038 hm5C_site_33722 DeepMRMD:1;iRNA_m5C:0.999536712158038 33723 chr4 1742647 1742647 1 + G A SKCM 1742652 + 1742632 1742672 41 TCTGAACTCCATGGAGAAGTCCTTCTCCGACCTCTTCAAGC TCTGAACTCCATGGAAAAGTCCTTCTCCGACCTCTTCAAGC < 41bp 1 0.0208941809302695 1 0.0209521353244781 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TACC3 ENSG00000013810 CDS Human protein_coding chr4:1742652 chr4:1742647 synonymous SNV . 0 16 hm5C_associated_SNPs_33864 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_33723 DeepMRMD:1;iRNA_m5C:0.999536712157814 33724 chr1 22329551 22329551 1 + G A SKCM 22329556 + 22329536 22329576 41 CGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCT CGTTGTCCATGGTGAAGATGCGGTCCCCTACAGCTGGCCCT < 41bp 1 0.188997187395292 1 0.263513326644897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329556 chr1:22329551 synonymous SNV . 0 16 hm5C_associated_SNPs_33865 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33724 DeepMRMD:1;iRNA_m5C:0.999536712157815 33725 chr1 22329551 22329551 1 + G A SKCM 22329560 + 22329540 22329580 41 GTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCA GTCCATGGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCA < 41bp 1 0.186262301608334 1 0.0502617061138153 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329560 chr1:22329551 synonymous SNV . 0 12 hm5C_associated_SNPs_33866 0 0 0 0 2 Endoplasmic reticulum 1 0.500231631137722 1 0.999536737724557 hm5C_site_33725 DeepMRMD:1;iRNA_m5C:0.999536737724557 33726 chr1 22329551 22329551 1 + G A SKCM 22329561 + 22329541 22329581 41 TCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG TCCATGGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCAG < 41bp 1 0.223425159491493 1 0.0914362967014313 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329561 chr1:22329551 synonymous SNV . 0 11 hm5C_associated_SNPs_33867 0 0 0 0 2 Endoplasmic reticulum 1 0.500231641677793 1 0.999536716644413 hm5C_site_33726 DeepMRMD:1;iRNA_m5C:0.999536716644413 33727 chr1 22329551 22329551 1 + G A SKCM 22329562 + 22329542 22329582 41 CCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGG CCATGGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCAGG < 41bp 1 0.0468567276530168 1 0.107180595397949 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329562 chr1:22329551 synonymous SNV . 0 10 hm5C_associated_SNPs_33868 0 0 0 0 2 Endoplasmic reticulum 1 0.499982095348677 1 1 hm5C_site_33727 DeepMRMD:1;iRNA_m5C:1 33728 chr1 22329551 22329551 1 + G A SKCM 22329563 + 22329543 22329583 41 CATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT CATGGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCAGGT < 41bp 1 0.69201767690045 1 0.377447515726089 experiment 0.6159646461991 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329563 chr1:22329551 synonymous SNV . 0 9 hm5C_associated_SNPs_33869 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643566066 1 0.999536712867867 hm5C_site_33728 DeepMRMD:1;iRNA_m5C:0.999536712867867 33729 chr1 22329551 22329551 1 + G A SKCM 22329566 + 22329546 22329586 41 GGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG GGTGAAGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAG < 41bp 1 0.57512366154017 1 0.195048838853836 experiment 0.849752676919661 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329566 chr1:22329551 synonymous SNV . 0 6 hm5C_associated_SNPs_33870 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33729 DeepMRMD:1;iRNA_m5C:0.999536712157815 33730 chr1 22329551 22329551 1 + G A SKCM 22329569 + 22329549 22329589 41 GAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC GAAGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGC < 41bp 1 0.333781577704066 1 0.31655216217041 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22329569 chr1:22329551 synonymous SNV . 0 3 hm5C_associated_SNPs_33871 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921331 1 0.999536712157339 hm5C_site_33730 DeepMRMD:1;iRNA_m5C:0.999536712157339 33731 chr2 73477004 73477004 1 + C T SKCM 73476990 + 73476970 73477010 41 CAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTCGATGCC CAGTGTGAATGCTCTGTCAGCAGATGTGCTGGGTTGATGCC < 41bp 1 0.541978525706448 1 0.535903036594391 experiment 0.916042948587104 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476990 chr2:73477004 stopgain 0.888 0 35 hm5C_associated_SNPs_33872 0 0 1 0 2 Cytosol 1 0.500231642394317 0.928193926811218 0.999536715211365 hm5C_site_33731 DeepMRMD:0.928193926811218;iRNA_m5C:0.999536715211365 33732 chr14 39645288 39645288 1 + C T SKCM 39645306 + 39645286 39645326 41 ATCCAAGCCAGATTGCTGGCCCTTTCTGGTCCTGGTGGAGG ATTCAAGCCAGATTGCTGGCCCTTTCTGGTCCTGGTGGAGG < 41bp 1 0.0288254789148212 1 0.0179023146629333 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39645306 chr14:39645288 synonymous SNV . 0 3 hm5C_associated_SNPs_33874 0 0 1 0 2 Nucleus 1 0.500231643922007 1 0.999536712155986 hm5C_site_33732 DeepMRMD:1;iRNA_m5C:0.999536712155986 33733 chr14 104124103 104124103 1 + T C SKCM 104124107 + 104124087 104124127 41 AAATATGATGACGACATTTCCCCATCCGTGAGTGGCTCTGT AAATATGATGACGACACTTCCCCATCCGTGAGTGGCTCTGT < 41bp 1 0.0873228229708543 1 0.234586805105209 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124107 chr14:104124103 nonsynonymous SNV 0.907 0 17 hm5C_associated_SNPs_33875 0 0 1 0 1 Cytosol 1 0.500231645006431 1 0.999536709987138 hm5C_site_33733 DeepMRMD:1;iRNA_m5C:0.999536709987138 33734 chr14 104124103 104124103 1 + T C SKCM 104124108 + 104124088 104124128 41 AATATGATGACGACATTTCCCCATCCGTGAGTGGCTCTGTA AATATGATGACGACACTTCCCCATCCGTGAGTGGCTCTGTA < 41bp 1 0.040203676664756 1 0.129195541143417 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124108 chr14:104124103 nonsynonymous SNV 0.907 0 16 hm5C_associated_SNPs_33876 0 0 1 0 1 Cytosol 1 0.500231641438219 1 0.999536717123562 hm5C_site_33734 DeepMRMD:1;iRNA_m5C:0.999536717123562 33735 chr14 104124103 104124103 1 + T C SKCM 104124112 + 104124092 104124132 41 TGATGACGACATTTCCCCATCCGTGAGTGGCTCTGTAGCAA TGATGACGACACTTCCCCATCCGTGAGTGGCTCTGTAGCAA < 41bp 1 0.176248477415911 1 0.232467800378799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104124112 chr14:104124103 nonsynonymous SNV 0.907 0 12 hm5C_associated_SNPs_33877 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_33735 DeepMRMD:1;iRNA_m5C:0.999536712157812 33736 chr22 38021897 38021897 1 + C G SKCM 38021903 + 38021883 38021923 41 CCCTGGCGAGCAGGCCAGCCCTGAGCAGCCCAGTGCCTCAG CCCTGGCGAGCAGGGCAGCCCTGAGCAGCCCAGTGCCTCAG < 41bp 1 0.657881630058163 1 0.156625270843506 experiment 0.684236739883673 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021903 chr22:38021897 nonsynonymous SNV 0.004 0 15 hm5C_associated_SNPs_33878 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_33736 DeepMRMD:1;iRNA_m5C:0.999536712157815 33737 chr16 57685239 57685239 1 + C T SKCM 57685240 + 57685220 57685260 41 TCGAGAACTCCGAAGAGGCCCTCACAGTCCATGCCCCTTTC TCGAGAACTCCGAAGAGGCTCTCACAGTCCATGCCCCTTTC < 41bp 1 0.380329168965314 1 0.0605655610561371 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57685240 chr16:57685239 nonsynonymous SNV 0.160 0 20 hm5C_associated_SNPs_33879 0 0 1 0 1 Nucleus 1 0.500231643806968 1 0.999536712386063 hm5C_site_33737 DeepMRMD:1;iRNA_m5C:0.999536712386063 33738 chr4 166408639 166408639 1 + G A SKCM 166408636 + 166408616 166408656 41 AGCAACTGTTTTGAGATCACCGTGGAGCTTAGCTGTGAGAA AGCAACTGTTTTGAGATCACCGTAGAGCTTAGCTGTGAGAA < 41bp 1 0.279520573237889 1 0.622668623924255 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPE ENSG00000109472 CDS Human protein_coding chr4:166408636 chr4:166408639 synonymous SNV . 0 24 hm5C_associated_SNPs_33880 0 0 1 0 2 Ribosome 1 0.500231634059913 0.75466275215149 0.999536731880175 hm5C_site_33738 DeepMRMD:0.75466275215149;iRNA_m5C:0.999536731880175 33739 chr11 108559762 108559762 1 + C T SKCM 108559748 + 108559728 108559768 41 ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGTATTGTA < 41bp 1 0.610253325242614 1 0.734336256980896 experiment 0.779493349514772 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX10 ENSG00000178105 CDS Human protein_coding chr11:108559748 chr11:108559762 synonymous SNV . 0 35 hm5C_associated_SNPs_33881 0 0 0 0 2 Nucleus 1 0.500231644025943 0.531327486038208 0.999536711948113 hm5C_site_33739 DeepMRMD:0.531327486038208;iRNA_m5C:0.999536711948113 33740 chr19 10935753 10935753 1 + C T SKCM 10935765 + 10935745 10935785 41 GATGGGGCCCAGGAGAACACCTTCTCCATGGACCCCCAACT GATGGGGCTCAGGAGAACACCTTCTCCATGGACCCCCAACT < 41bp 1 0.167779419543544 1 0.138271629810333 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10935765 chr19:10935753 synonymous SNV . 0 9 hm5C_associated_SNPs_33882 0 0 1 0 1 Nucleus 1 0.500231644268592 1 0.999536711462816 hm5C_site_33740 DeepMRMD:1;iRNA_m5C:0.999536711462816 33741 chr4 7026944 7026944 1 + C T SKCM 7026933 + 7026913 7026953 41 AGGACCTGCCCGCCGAGGAGCTGTTTGCCTCCATCGCCACG AGGACCTGCCCGCCGAGGAGCTGTTTGCCTCTATCGCCACG < 41bp 1 0.24477580322908 1 0.0553560256958008 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:7026933 chr4:7026944 synonymous SNV . 0 32 hm5C_associated_SNPs_33883 0 0 1 0 1 Cytosol 1 0.5002317649945 1 0.999536470011 hm5C_site_33741 DeepMRMD:1;iRNA_m5C:0.999536470011 33742 chr6 133783593 133783593 1 + G A SKCM 133783602 + 133783582 133783622 41 CAGACAGGACAGCCCTACAGCTTGCCCACTTACGGTATTTC CAGACAGGACAACCCTACAGCTTGCCCACTTACGGTATTTC < 41bp 1 0.0593353107425437 1 0.043950617313385 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783602 chr6:133783593 synonymous SNV . 0 12 hm5C_associated_SNPs_33884 0 0 0 0 1 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_33742 DeepMRMD:1;iRNA_m5C:0.999536712157808 33743 chrX 73045901 73045901 1 + C T SKCM 73045890 - 73045870 73045910 41 TATGGAAAGGGTGACTGTGCCTGGGACAAAGCGAGGTCCCA TATGGAAAGAGTGACTGTGCCTGGGACAAAGCGAGGTCCCA < 41bp 1 0.691452214636821 1 0.411805331707001 experiment 0.617095570726359 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045890 chrX:73045901 . . 0 10 hm5C_associated_SNPs_33885 0 0 1 0 0 unknown 1 0.500231644296686 1 0.999536711406628 hm5C_site_33743 DeepMRMD:1;iRNA_m5C:0.999536711406628 33744 chrX 73045901 73045901 1 + C T SKCM 73045891 - 73045871 73045911 41 TTATGGAAAGGGTGACTGTGCCTGGGACAAAGCGAGGTCCC TTATGGAAAGAGTGACTGTGCCTGGGACAAAGCGAGGTCCC < 41bp 1 0.293474234488029 1 0.399386912584305 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045891 chrX:73045901 . . 0 11 hm5C_associated_SNPs_33886 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_33744 DeepMRMD:1;iRNA_m5C:0.999536712157816 33745 chrX 73045901 73045901 1 + C T SKCM 73045896 - 73045876 73045916 41 GATGGTTATGGAAAGGGTGACTGTGCCTGGGACAAAGCGAG GATGGTTATGGAAAGAGTGACTGTGCCTGGGACAAAGCGAG < 41bp 1 0.19970319801852 1 0.161518126726151 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045896 chrX:73045901 . . 0 16 hm5C_associated_SNPs_33887 0 0 1 0 0 unknown 1 0.500231589945786 1 0.999536820108428 hm5C_site_33745 DeepMRMD:1;iRNA_m5C:0.999536820108428 33746 chr10 60580162 60580162 1 + C T SKCM 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCGATCTTCAGACATTCCTCACTCTCACAGATTAGGATCT < 41bp 1 0.0886036208651317 1 0.153360158205032 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580162 stopgain 1.000 1 34 hm5C_associated_SNPs_33888 0 0 1 0 2 nucleus 1 0.500231890741976 1 0.999536218516049 hm5C_site_33746 DeepMRMD:1;iRNA_m5C:0.999536218516049 33747 chr1 200869295 200869295 1 + C T SKCM 200869306 + 200869286 200869326 41 CCCAAGGTTCGCCGCAGGATCGGAGCGGCTTACAAACTGGA CCCAAGGTTTGCCGCAGGATCGGAGCGGCTTACAAACTGGA < 41bp 1 0.618564640165337 1 0.534213781356812 experiment 0.762870719669326 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869306 chr1:200869295 nonsynonymous SNV 0.987 4 10 hm5C_associated_SNPs_33889 0 0 1 0 2 cytosol 1 0.500231643921109 0.931572437286376 0.999536712157783 hm5C_site_33747 DeepMRMD:0.931572437286376;iRNA_m5C:0.999536712157783 33748 chr20 2844864 2844864 1 + C T SKCM 2844855 + 2844835 2844875 41 ATGAGCCACGCTCAGGGGAGCAGGTACCCCTTCTCCTAAAG ATGAGCCACGCTCAGGGGAGCAGGTACCCTTTCTCCTAAAG < 41bp 1 0.435530497446684 1 0.460968494415283 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844855 chr20:2844864 nonsynonymous SNV 0.983 4 30 hm5C_associated_SNPs_33890 0 0 0 0 1 chromatin 1 0.500231643921109 1 0.999536712157783 hm5C_site_33748 DeepMRMD:1;iRNA_m5C:0.999536712157783 33749 chr9 131296136 131296136 1 + G A SKCM 131296139 + 131296119 131296159 41 TCCACCCCAGAGTGGGGGACCTCATTCTTGCTCATCTACAT TCCACCCCAGAGTGGGGAACCTCATTCTTGCTCATCTACAT < 41bp 1 0.416607754013311 1 0.0658001601696014 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLE1 ENSG00000119392 CDS Human protein_coding chr9:131296139 chr9:131296136 nonsynonymous SNV 0.981 1 18 hm5C_associated_SNPs_33891 0 0 1 0 2 Cytosol 1 0.500231635406741 1 0.999536729186518 hm5C_site_33749 DeepMRMD:1;iRNA_m5C:0.999536729186518 33750 chr19 47111768 47111768 1 + C T SKCM 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCGGAGTTCTTGACCATGATGGCCAGAAAGATGA < 41bp 1 0.115594195930031 1 0.0447540581226349 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111768 synonymous SNV . 0 17 hm5C_associated_SNPs_33892 0 0 1 0 2 Ribosome 1 0.500231643921099 1 0.999536712157801 hm5C_site_33750 DeepMRMD:1;iRNA_m5C:0.999536712157801 33751 chr19 47111768 47111768 1 + C T SKCM 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTCTTGACCATGATGGCCAGAAAGATGAAGGACACAGA < 41bp 1 0.534970464969816 1 0.672411978244781 experiment 0.930059070060368 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111768 synonymous SNV . 0 7 hm5C_associated_SNPs_33893 0 0 1 0 2 Ribosome 1 0.500231594795866 0.655176043510438 0.999536810408267 hm5C_site_33751 DeepMRMD:0.655176043510438;iRNA_m5C:0.999536810408267 33752 chr10 71243603 71243603 1 + C T SKCM 71243594 + 71243574 71243614 41 TGGTCTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAAC TGGTCTCCTTCATTGGTGTGCTGGCGTCCTTCCGTGACAAC < 41bp 1 0.448263910303391 1 0.229879021644592 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243594 chr10:71243603 nonsynonymous SNV 0.991 4 30 hm5C_associated_SNPs_33894 0 0 1 0 1 Cytosol 1 0.500231643921332 1 0.999536712157335 hm5C_site_33752 DeepMRMD:1;iRNA_m5C:0.999536712157335 33753 chr10 71243603 71243603 1 + C T SKCM 71243598 + 71243578 71243618 41 CTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAACCTGT CTCCTTCATTGGTGTGCTGGCGTCCTTCCGTGACAACCTGT < 41bp 1 0.147801483502549 1 0.240323930978775 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243598 chr10:71243603 nonsynonymous SNV 0.991 4 26 hm5C_associated_SNPs_33895 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33753 DeepMRMD:1;iRNA_m5C:0.999536712157815 33754 chr10 71243603 71243603 1 + C T SKCM 71243601 + 71243581 71243621 41 CTTCATTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACC CTTCATTGGTGTGCTGGCGTCCTTCCGTGACAACCTGTACC < 41bp 1 0.0197475462204182 1 0.0970612168312073 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243601 chr10:71243603 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_33896 0 0 1 0 1 Cytosol 1 0.50023165280638 1 0.999536694387239 hm5C_site_33754 DeepMRMD:1;iRNA_m5C:0.999536694387239 33755 chr19 47111767 47111767 1 + C T SKCM 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCGGAGTTTCTGACCATGATGGCCAGAAAGATGA < 41bp 1 0.102249721573921 1 0.0366709232330322 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111767 synonymous SNV . 0 16 hm5C_associated_SNPs_33898 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33755 DeepMRMD:1;iRNA_m5C:0.999536712157815 33756 chr19 47111767 47111767 1 + C T SKCM 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTTCTGACCATGATGGCCAGAAAGATGAAGGACACAGA < 41bp 1 0.572671079715508 1 0.758631587028503 experiment 0.854657840568984 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111767 synonymous SNV . 0 6 hm5C_associated_SNPs_33899 0 0 1 0 2 Ribosome 1 0.500231643863108 0.482736825942994 0.999536712273783 hm5C_site_33756 DeepMRMD:0.482736825942994;iRNA_m5C:0.999536712273783 33757 chr15 69652438 69652438 1 + C T SKCM 69652440 + 69652420 69652460 41 ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCA ATGCTGAGCCTGAAGCTCTCCAGGCTGTTTAGCATAGACCA < 41bp 1 0.647520922910882 1 0.879960238933563 experiment 0.704958154178235 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652440 chr15:69652438 nonsynonymous SNV 0.619 4 19 hm5C_associated_SNPs_33900 0 0 0 0 1 Cytosol 1 0.500231643921122 0.240079522132874 0.999536712157756 hm5C_site_33757 DeepMRMD:0.240079522132874;iRNA_m5C:0.999536712157756 33758 chr16 12618679 12618679 1 + C T SKCM 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCT < 41bp 1 0.141778629568943 1 0.268448114395142 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618679 stopgain 0.707 1 41 hm5C_associated_SNPs_33901 0 0 1 0 1 Nucleus 1 0.500231643921088 1 0.999536712157824 hm5C_site_33758 DeepMRMD:1;iRNA_m5C:0.999536712157824 33759 chr3 142840893 142840893 1 + C T SKCM 142840885 + 142840865 142840905 41 GCTAAGACGCTGCAGACAGCCCTGCAGCCCCCTGACTGGCT GCTAAGACGCTGCAGACAGCCCTGCAGCTCCCTGACTGGCT < 41bp 1 0.111357625363432 1 0.0722450613975525 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840885 chr3:142840893 nonsynonymous SNV 0.994 4 29 hm5C_associated_SNPs_33902 0 0 1 0 0 cytosol 1 0.500231644232126 1 0.999536711535748 hm5C_site_33759 DeepMRMD:1;iRNA_m5C:0.999536711535748 33760 chr3 142840893 142840893 1 + C T SKCM 142840907 + 142840887 142840927 41 TGCAGCCCCCTGACTGGCTGCAGGGCCACTACCTGGTGGTG TGCAGCTCCCTGACTGGCTGCAGGGCCACTACCTGGTGGTG < 41bp 1 0.516283423342764 1 0.731511056423187 experiment 0.967433153314472 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840907 chr3:142840893 nonsynonymous SNV 0.994 4 7 hm5C_associated_SNPs_33903 0 0 1 0 0 cytosol 1 0.500231643921114 0.536977887153626 0.999536712157773 hm5C_site_33760 DeepMRMD:0.536977887153626;iRNA_m5C:0.999536712157773 33761 chr17 80012379 80012379 1 + C T SKCM 80012377 + 80012357 80012397 41 GCCATCCTGATGGCCAGGTCCTCTCTCAGGGAGCTGCAGAA GCCATCCTGATGGCCAGGTCCTTTCTCAGGGAGCTGCAGAA < 41bp 1 0.0455082444988424 1 0.0878946185112 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPS1 ENSG00000169727 CDS Human protein_coding chr17:80012377 chr17:80012379 nonsynonymous SNV 0.086 0 23 hm5C_associated_SNPs_33904 0 0 0 0 1 Cytosol 1 0.500231643763288 1 0.999536712473423 hm5C_site_33761 DeepMRMD:1;iRNA_m5C:0.999536712473423 33762 chr17 36873073 36873073 1 + C T SKCM 36873079 + 36873059 36873099 41 CCCAGCTGCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCT CCCAGCTGCCCCATTCTTGCCCAGTGCCCAGCTGGCTGGCT < 41bp 1 0.214488192579734 1 0.140426814556122 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873079 chr17:36873073 nonsynonymous SNV 0.008 0 15 hm5C_associated_SNPs_33905 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_33762 DeepMRMD:1;iRNA_m5C:0.999536712157815 33763 chr17 36873073 36873073 1 + C T SKCM 36873080 + 36873060 36873100 41 CCAGCTGCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTT CCAGCTGCCCCATTCTTGCCCAGTGCCCAGCTGGCTGGCTT < 41bp 1 0.331036054486435 1 0.0413154661655426 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873080 chr17:36873073 nonsynonymous SNV 0.008 0 14 hm5C_associated_SNPs_33906 0 0 0 0 0 chromatin 1 0.500231643901785 1 0.999536712196429 hm5C_site_33763 DeepMRMD:1;iRNA_m5C:0.999536712196429 33764 chr17 36873073 36873073 1 + C T SKCM 36873085 + 36873065 36873105 41 TGCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCG TGCCCCATTCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCG < 41bp 1 0.118914022834693 1 0.0722228586673737 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873085 chr17:36873073 nonsynonymous SNV 0.008 0 9 hm5C_associated_SNPs_33907 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_33764 DeepMRMD:1;iRNA_m5C:0.999536712157815 33765 chr17 36873073 36873073 1 + C T SKCM 36873086 + 36873066 36873106 41 GCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCGC GCCCCATTCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCGC < 41bp 1 0.132344532611594 1 0.167273759841919 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873086 chr17:36873073 nonsynonymous SNV 0.008 0 8 hm5C_associated_SNPs_33908 0 0 0 0 0 chromatin 1 0.500231643134262 1 0.999536713731477 hm5C_site_33765 DeepMRMD:1;iRNA_m5C:0.999536713731477 33766 chr17 36873073 36873073 1 + C T SKCM 36873087 + 36873067 36873107 41 CCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCGCC CCCCATTCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCGCC < 41bp 1 0.370124441570464 1 0.326711118221283 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873087 chr17:36873073 nonsynonymous SNV 0.008 0 7 hm5C_associated_SNPs_33909 0 0 0 0 0 chromatin 1 0.500231643923898 1 0.999536712152205 hm5C_site_33766 DeepMRMD:1;iRNA_m5C:0.999536712152205 33767 chr6 7579663 7579663 1 + G A SKCM 7579653 + 7579633 7579673 41 CCAGTTCAAAGCGAAGCTTGCGAGCCTGGAGGAGCTGAAGA CCAGTTCAAAGCGAAGCTTGCGAGCCTGGAAGAGCTGAAGA < 41bp 1 0.324124625607543 1 0.40943855047226 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579653 chr6:7579663 synonymous SNV . 0 31 hm5C_associated_SNPs_33910 0 0 1 0 0 Nucleus 1 0.500231679532423 1 0.999536640935153 hm5C_site_33767 DeepMRMD:1;iRNA_m5C:0.999536640935153 33768 chr17 17697985 17697985 1 + C T SKCM 17698000 + 17697980 17698020 41 AGAGCCTACACGGCAGTCTGCCGCTCGACAGCTTCTCCAAG AGAGCTTACACGGCAGTCTGCCGCTCGACAGCTTCTCCAAG < 41bp 1 0.0650707336413198 1 0.0150933861732483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17698000 chr17:17697985 synonymous SNV . 0 6 hm5C_associated_SNPs_33911 0 0 1 0 0 chromatin 1 0.500231649123214 1 0.999536701753573 hm5C_site_33768 DeepMRMD:1;iRNA_m5C:0.999536701753573 33769 chr11 66062689 66062689 1 + C T SKCM 66062700 + 66062680 66062720 41 CAGCTCGCCCCCGCCGGGGGCCGTGCCCAGCGGGCCCCCGC CAGCTCGCCTCCGCCGGGGGCCGTGCCCAGCGGGCCCCCGC < 41bp 1 0.282271449116781 1 0.143325388431549 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66062700 chr11:66062689 synonymous SNV . 0 10 hm5C_associated_SNPs_33912 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_33769 DeepMRMD:1;iRNA_m5C:0.999536712157815 33770 chr11 66062689 66062689 1 + C T SKCM 66062701 + 66062681 66062721 41 AGCTCGCCCCCGCCGGGGGCCGTGCCCAGCGGGCCCCCGCT AGCTCGCCTCCGCCGGGGGCCGTGCCCAGCGGGCCCCCGCT < 41bp 1 0.315665006692114 1 0.220358163118362 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66062701 chr11:66062689 synonymous SNV . 0 9 hm5C_associated_SNPs_33913 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_33770 DeepMRMD:1;iRNA_m5C:0.999536712157813 33771 chr6 27101030 27101030 1 + C T SKCM 27101032 + 27101012 27101052 41 GGTGCTGGAGTACCTGACCGCCGAGATCCTGGAACTGGCGG GGTGCTGGAGTACCTGACTGCCGAGATCCTGGAACTGGCGG < 41bp 1 0.595631866798459 1 0.678173899650574 experiment 0.808736266403081 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101032 chr6:27101030 synonymous SNV . 0 19 hm5C_associated_SNPs_33914 0 0 1 0 0 Ribosome 1 0.500231643921092 0.643652200698852 0.999536712157815 hm5C_site_33771 DeepMRMD:0.643652200698852;iRNA_m5C:0.999536712157815 33772 chr14 21464975 21464975 1 + T G SKCM 21464984 + 21464964 21465004 41 GTGTCAGCTCCTGGGGAGATCTTTTACCTGTGCTTACTCCG GTGTCAGCTCCGGGGGAGATCTTTTACCTGTGCTTACTCCG < 41bp 1 0.201153414106641 1 0.107245057821274 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464984 chr14:21464975 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_33916 0 0 1 0 2 Ribosome 1 0.500231643921117 1 0.999536712157767 hm5C_site_33772 DeepMRMD:1;iRNA_m5C:0.999536712157767 33773 chr19 42839490 42839490 1 + A C SKCM 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCGTCCTATACCACTTCTCCGCCAACACCTGGGAGTCTT < 41bp 1 0.116417533813339 1 0.355312764644623 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839490 nonsynonymous SNV 0.992 2 14 hm5C_associated_SNPs_33917 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33773 DeepMRMD:1;iRNA_m5C:0.999536712157815 33774 chr7 142459700 142459700 1 + G A SKCM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAA < 41bp 1 0.530536555209077 1 0.260979413986206 experiment 0.938926889581845 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459700 synonymous SNV . 0 41 hm5C_associated_SNPs_33918 0 0 0 0 1 Cytosol 1 0.500231643921223 1 0.999536712157553 hm5C_site_33774 DeepMRMD:1;iRNA_m5C:0.999536712157553 33775 chr7 142459700 142459700 1 + G A SKCM 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAAATCAT < 41bp 1 0.627645811949578 1 0.0490031838417053 experiment 0.744708376100843 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459700 synonymous SNV . 0 36 hm5C_associated_SNPs_33919 0 0 0 0 1 Cytosol 1 0.500231643920081 1 0.999536712159838 hm5C_site_33775 DeepMRMD:1;iRNA_m5C:0.999536712159838 33776 chr7 142459700 142459700 1 + G A SKCM 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAGCAGTTCATCAATGCAGCCAAAATCATCCG < 41bp 1 0.653103259883232 1 0.380787134170532 experiment 0.693793480233535 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459700 synonymous SNV . 0 33 hm5C_associated_SNPs_33920 0 0 0 0 1 Cytosol 1 0.500231260654663 1 0.999537478690675 hm5C_site_33776 DeepMRMD:1;iRNA_m5C:0.999537478690675 33777 chr7 142459700 142459700 1 + G A SKCM 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCAGCCAAAATCATCCGCCACC < 41bp 1 0.533703751108039 1 0.0425055027008057 experiment 0.932592497783921 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459700 synonymous SNV . 0 28 hm5C_associated_SNPs_33921 0 0 0 0 1 Cytosol 1 0.500231643913754 1 0.999536712172492 hm5C_site_33777 DeepMRMD:1;iRNA_m5C:0.999536712172492 33778 chr7 142459700 142459700 1 + G A SKCM 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAAATCATCCGCCACCCCC < 41bp 1 0.474724858208625 1 0.354511022567749 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459700 synonymous SNV . 0 25 hm5C_associated_SNPs_33922 0 0 0 0 1 Cytosol 1 0.50023162214911 1 0.99953675570178 hm5C_site_33778 DeepMRMD:1;iRNA_m5C:0.99953675570178 33779 chr7 142459700 142459700 1 + G A SKCM 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAAATCATCCGCCACCCCCAATACGA < 41bp 1 0.387830562269924 1 0.416826575994492 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459700 synonymous SNV . 0 18 hm5C_associated_SNPs_33924 0 0 0 0 1 Cytosol 1 0.500231598171674 1 0.999536803656653 hm5C_site_33779 DeepMRMD:1;iRNA_m5C:0.999536803656653 33780 chr7 142459700 142459700 1 + G A SKCM 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAAATCATCCGCCACCCCCAATACGACAG < 41bp 1 0.299077452474468 1 0.352719664573669 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459700 synonymous SNV . 0 15 hm5C_associated_SNPs_33925 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33780 DeepMRMD:1;iRNA_m5C:0.999536712157815 33781 chr7 142459700 142459700 1 + G A SKCM 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAAATCATCCGCCACCCCCAATACGACAGGAA < 41bp 1 0.0971072070014137 1 0.0882189273834229 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459700 synonymous SNV . 0 12 hm5C_associated_SNPs_33927 0 0 0 0 1 Cytosol 1 0.500231643920315 1 0.99953671215937 hm5C_site_33781 DeepMRMD:1;iRNA_m5C:0.99953671215937 33782 chr7 142459700 142459700 1 + G A SKCM 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAAATCATCCGCCACCCCCAATACGACAGGAAG < 41bp 1 0.180179182804137 1 0.120152622461319 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459700 synonymous SNV . 0 11 hm5C_associated_SNPs_33928 0 0 0 0 1 Cytosol 1 0.500231643921229 1 0.999536712157542 hm5C_site_33782 DeepMRMD:1;iRNA_m5C:0.999536712157542 33783 chr7 142459700 142459700 1 + G A SKCM 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAAATCATCCGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.126997189981152 1 0.108436226844788 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459700 synonymous SNV . 0 9 hm5C_associated_SNPs_33929 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_33783 DeepMRMD:1;iRNA_m5C:0.999536712157815 33784 chr7 142459700 142459700 1 + G A SKCM 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAAATCATCCGCCACCCCCAATACGACAGGAAGACT < 41bp 1 0.457918071099766 1 0.55137437582016 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459700 synonymous SNV . 0 8 hm5C_associated_SNPs_33930 0 0 0 0 1 Cytosol 1 0.500231643921093 0.89725124835968 0.999536712157815 hm5C_site_33784 DeepMRMD:0.89725124835968;iRNA_m5C:0.999536712157815 33785 chr7 142459700 142459700 1 + G A SKCM 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAAATCATCCGCCACCCCCAATACGACAGGAAGACTC < 41bp 1 0.518404704192129 1 0.215316474437714 experiment 0.963190591615741 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459700 synonymous SNV . 0 7 hm5C_associated_SNPs_33931 0 0 0 0 1 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_33785 DeepMRMD:1;iRNA_m5C:0.999536712157806 33786 chr7 142459700 142459700 1 + G A SKCM 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAAATCATCCGCCACCCCCAATACGACAGGAAGACTCT < 41bp 1 0.240277346120935 1 0.171288132667542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459700 synonymous SNV . 0 6 hm5C_associated_SNPs_33932 0 0 0 0 1 Cytosol 1 0.500231643921105 1 0.99953671215779 hm5C_site_33786 DeepMRMD:1;iRNA_m5C:0.99953671215779 33787 chr7 142459700 142459700 1 + G A SKCM 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAAATCATCCGCCACCCCCAATACGACAGGAAGACTCTG < 41bp 1 0.428525454635056 1 0.108257383108139 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459700 synonymous SNV . 0 5 hm5C_associated_SNPs_33933 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33787 DeepMRMD:1;iRNA_m5C:0.999536712157815 33788 chr13 49765165 49765165 1 + A T SKCM 49765179 + 49765159 49765199 41 ATCTTTACTTGTGCAGACTCCAGCTGTGCCTCCTGGCCCAT ATCTTTTCTTGTGCAGACTCCAGCTGTGCCTCCTGGCCCAT < 41bp 1 0.592226232164834 1 0.271558225154877 experiment 0.815547535670333 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49765179 chr13:49765165 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_33934 0 0 1 0 2 Cytosol 1 0.500231640214908 1 0.999536719570185 hm5C_site_33788 DeepMRMD:1;iRNA_m5C:0.999536719570185 33789 chr11 67378014 67378014 1 + C T SKCM 67378025 + 67378005 67378045 41 AAGCCCCGCCTGAAGCCCCCCTTCCCCGCAGACGTGGGTAA AAGCCCCGCTTGAAGCCCCCCTTCCCCGCAGACGTGGGTAA < 41bp 1 0.116993105750324 1 0.15353137254715 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378025 chr11:67378014 synonymous SNV . 0 10 hm5C_associated_SNPs_33935 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33789 DeepMRMD:1;iRNA_m5C:0.999536712157815 33790 chr5 167850639 167850639 1 + C T SKCM 167850633 + 167850613 167850653 41 TGCATCCAGCCTGGACTCCTCCACTTCAGCCAGCTTCACTG TGCATCCAGCCTGGACTCCTCCACTTTAGCCAGCTTCACTG < 41bp 1 0.160122097988091 1 0.0930698215961456 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167850633 chr5:167850639 nonsynonymous SNV 0.992 3 27 hm5C_associated_SNPs_33936 0 0 0 0 0 Ribosome 1 0.50023161656501 1 0.999536766869979 hm5C_site_33790 DeepMRMD:1;iRNA_m5C:0.999536766869979 33791 chr2 220346385 220346385 1 + G A SKCM 220346365 + 220346345 220346385 41 CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAG CTCATTCATTCACAGGAGACCTACCGCAGAAGAGACCCTAA < 41bp 1 0.0285926634439864 1 0.129580229520798 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220346365 chr2:220346385 nonsynonymous SNV 0.998 0 41 hm5C_associated_SNPs_33937 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33791 DeepMRMD:1;iRNA_m5C:0.999536712157815 33792 chr3 130683792 130683792 1 + G A SKCM 130683793 + 130683773 130683813 41 TAATGATTTAATTCTTTAGGCTGCTGTAATGTGATTTGTTC TAATGATTTAATTCTTTAGACTGCTGTAATGTGATTTGTTC < 41bp 1 0.237936983463356 1 0.0694016516208649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130683793 chr3:130683792 nonsynonymous SNV 0.858 5 20 hm5C_associated_SNPs_33938 0 0 1 0 2 Ribosome 1 0.500231770860425 1 0.99953645827915 hm5C_site_33792 DeepMRMD:1;iRNA_m5C:0.99953645827915 33793 chr13 76414540 76414540 1 + C T SKCM 76414530 + 76414510 76414550 41 CTCTGATAACTGGTTAGCTTCCAGTTCCAACCATCAGTGCC CTCTGATAACTGGTTAGCTTCCAGTTCCAATCATCAGTGCC < 41bp 1 0.176134073832388 1 0.061181366443634 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76414530 chr13:76414540 nonsynonymous SNV 0.994 4 31 hm5C_associated_SNPs_33939 0 0 1 0 2 Cytosol 1 0.500231669400761 1 0.999536661198478 hm5C_site_33793 DeepMRMD:1;iRNA_m5C:0.999536661198478 33794 chr11 119170471 119170471 1 + C T SKCM 119170488 + 119170468 119170508 41 TCTCCTGCCCATGTAGCTACCTAGCACACCATCTCCCTGCT TCTTCTGCCCATGTAGCTACCTAGCACACCATCTCCCTGCT < 41bp 1 0.293989361208258 1 0.0367252230644226 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119170488 chr11:119170471 nonsynonymous SNV 0.992 2 4 hm5C_associated_SNPs_33941 0 0 1 0 0 Ribosome 1 0.500231643766556 1 0.999536712466888 hm5C_site_33794 DeepMRMD:1;iRNA_m5C:0.999536712466888 33795 chr22 23596118 23596118 1 + G A SKCM 23596125 + 23596105 23596145 41 AGCAGCAAGGGCAGGGGCAGCCGGGATGCGCTGGTCTCGGG AGCAGCAAGGGCAAGGGCAGCCGGGATGCGCTGGTCTCGGG < 41bp 1 0.569924030605987 1 0.759303748607635 experiment 0.860151938788026 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23596125 chr22:23596118 nonsynonymous SNV 0.995 2 14 hm5C_associated_SNPs_33942 0 0 1 0 1 Ribosome 1 0.500231643921019 0.48139250278473 0.999536712157962 hm5C_site_33795 DeepMRMD:0.48139250278473;iRNA_m5C:0.999536712157962 33796 chr3 157841665 157841665 1 + C T SKCM 157841658 + 157841638 157841678 41 ATTATATTTTATTTCAGACGCAGGCATCGATCAAGCAGTAG ATTATATTTTATTTCAGACGCAGGCATTGATCAAGCAGTAG < 41bp 1 0.335689523701127 1 0.209890812635422 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841658 chr3:157841665 stopgain 0.997 1 28 hm5C_associated_SNPs_33943 0 0 1 0 1 Ribosome 1 0.500231641552203 1 0.999536716895595 hm5C_site_33796 DeepMRMD:1;iRNA_m5C:0.999536716895595 33797 chr6 31599959 31599959 1 + G A SKCM 31599963 + 31599943 31599983 41 GGGGTGCCATCTCGCCGGGGCCGAGGAGGAGGGAGGCCCCC GGGGTGCCATCTCGCCAGGGCCGAGGAGGAGGGAGGCCCCC < 41bp 1 0.431994348367647 1 0.590671062469482 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31599963 chr6:31599959 nonsynonymous SNV 0.113 4 17 hm5C_associated_SNPs_33945 0 0 1 0 0 Ribosome 1 0.500231643921092 0.818657875061036 0.999536712157815 hm5C_site_33797 DeepMRMD:0.818657875061036;iRNA_m5C:0.999536712157815 33798 chr7 100777068 100777068 1 + G A SKCM 100777083 + 100777063 100777103 41 CTTATGAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATT CTTATAAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATT < 41bp 1 0.125103640555664 1 0.170665889978409 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100777083 chr7:100777068 nonsynonymous SNV 0.895 2 6 hm5C_associated_SNPs_33946 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_33798 DeepMRMD:1;iRNA_m5C:0.999536712157815 33799 chr7 100777068 100777068 1 + G A SKCM 100777087 + 100777067 100777107 41 TGAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATTCTGA TAAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATTCTGA < 41bp 1 0.469130279067054 1 0.566033244132996 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100777087 chr7:100777068 nonsynonymous SNV 0.895 2 2 hm5C_associated_SNPs_33947 0 0 1 0 1 Ribosome 1 0.50023164392125 0.867933511734008 0.999536712157501 hm5C_site_33799 DeepMRMD:0.867933511734008;iRNA_m5C:0.999536712157501 33800 chr4 113189382 113189382 1 + G A SKCM 113189402 + 113189382 113189422 41 GAAGACTGGAAGTAATCCTACATCAGCCTCTGATGATTCCA AAAGACTGGAAGTAATCCTACATCAGCCTCTGATGATTCCA < 41bp 1 0.356951139656783 1 0.0677743256092072 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP1AR ENSG00000138660 CDS Human protein_coding chr4:113189402 chr4:113189382 synonymous SNV . 0 1 hm5C_associated_SNPs_33948 0 0 1 0 1 Ribosome 1 0.500231657515407 1 0.999536684969186 hm5C_site_33800 DeepMRMD:1;iRNA_m5C:0.999536684969186 33801 chr7 128845608 128845608 1 + G A SKCM 128845621 + 128845601 128845641 41 ACCATGAGGCTTGGGGAGCCCACGTAGGTGTCTTGGGGACC ACCATGAAGCTTGGGGAGCCCACGTAGGTGTCTTGGGGACC < 41bp 1 0.60288699967925 1 0.559057116508484 experiment 0.794226000641499 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128845621 chr7:128845608 nonsynonymous SNV 0.995 4 8 hm5C_associated_SNPs_33949 0 0 1 0 1 cytosol 1 0.500231643949171 0.881885766983032 0.999536712101657 hm5C_site_33801 DeepMRMD:0.881885766983032;iRNA_m5C:0.999536712101657 33802 chr1 116206830 116206830 1 + G A SKCM 116206847 + 116206827 116206867 41 CACGCTGCAGGTGGTCCGCTCCACCGATGGCGAGTCCCGCT CACACTGCAGGTGGTCCGCTCCACCGATGGCGAGTCCCGCT < 41bp 1 0.188043904335444 1 0.0487476289272308 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VANGL1 ENSG00000173218 CDS Human protein_coding chr1:116206847 chr1:116206830 synonymous SNV . 0 4 hm5C_associated_SNPs_33951 0 0 1 0 1 Ribosome 1 0.500231644027979 1 0.999536711944041 hm5C_site_33802 DeepMRMD:1;iRNA_m5C:0.999536711944041 33803 chr6 35423814 35423814 1 + C T SKCM 35423816 + 35423796 35423836 41 GGGGCAGGAGGTTGAAATCCCCCCAGGCTCCAGACCCTGAA GGGGCAGGAGGTTGAAATTCCCCCAGGCTCCAGACCCTGAA < 41bp 1 0.641518007068085 1 0.228030234575272 experiment 0.71696398586383 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCE ENSG00000112039 CDS Human protein_coding chr6:35423816 chr6:35423814 nonsynonymous SNV 0.089 0 19 hm5C_associated_SNPs_33952 0 0 1 0 0 Ribosome 1 0.500231643921242 1 0.999536712157517 hm5C_site_33803 DeepMRMD:1;iRNA_m5C:0.999536712157517 33804 chr6 35423814 35423814 1 + C T SKCM 35423818 + 35423798 35423838 41 GGCAGGAGGTTGAAATCCCCCCAGGCTCCAGACCCTGAAGA GGCAGGAGGTTGAAATTCCCCCAGGCTCCAGACCCTGAAGA < 41bp 1 0.555532619169907 1 0.72821706533432 experiment 0.888934761660186 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCE ENSG00000112039 CDS Human protein_coding chr6:35423818 chr6:35423814 nonsynonymous SNV 0.089 0 17 hm5C_associated_SNPs_33953 0 0 1 0 0 Ribosome 1 0.500231643921141 0.54356586933136 0.999536712157718 hm5C_site_33804 DeepMRMD:0.54356586933136;iRNA_m5C:0.999536712157718 33805 chr6 35423814 35423814 1 + C T SKCM 35423819 + 35423799 35423839 41 GCAGGAGGTTGAAATCCCCCCAGGCTCCAGACCCTGAAGAA GCAGGAGGTTGAAATTCCCCCAGGCTCCAGACCCTGAAGAA < 41bp 1 0.544103058785363 1 0.716412901878357 experiment 0.911793882429273 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FANCE ENSG00000112039 CDS Human protein_coding chr6:35423819 chr6:35423814 nonsynonymous SNV 0.089 0 16 hm5C_associated_SNPs_33954 0 0 1 0 0 Ribosome 1 0.500231643921092 0.567174196243286 0.999536712157815 hm5C_site_33805 DeepMRMD:0.567174196243286;iRNA_m5C:0.999536712157815 33806 chr7 2686498 2686498 1 + C T SKCM 2686507 + 2686487 2686527 41 GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTCGC GCCCTGCTGCTTCTGGGGGCCGCCGCCCTGGCCTGCCTCGC < 41bp 1 0.509663825739108 1 0.742795765399933 experiment 0.980672348521784 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686507 chr7:2686498 synonymous SNV . 0 12 hm5C_associated_SNPs_33955 0 0 1 0 1 Ribosome 1 0.500231643921094 0.514408469200134 0.999536712157813 hm5C_site_33806 DeepMRMD:0.514408469200134;iRNA_m5C:0.999536712157813 33807 chrX 73043377 73043377 1 + G A SKCM 73043361 - 73043341 73043381 41 GATTCATTTGATAAACAAAGCATCTTTTATGTGGAATATAC GATTTATTTGATAAACAAAGCATCTTTTATGTGGAATATAC < 41bp 1 0.0416890084564343 1 0.0693128407001495 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043361 chrX:73043377 . . 0 5 hm5C_associated_SNPs_33956 0 0 1 0 0 unknown 1 0.500233007915195 1 0.99953398416961 hm5C_site_33807 DeepMRMD:1;iRNA_m5C:0.99953398416961 33808 chr11 61404401 61404401 1 + G A SKCM 61404392 + 61404372 61404412 41 CTCTGGAGAAACTGCTGCCTCGCATCTGGGAGAATGTGGGC CTCTGGAGAAACTGCTGCCTCGCATCTGGAAGAATGTGGGC < 41bp 1 0.541777272218656 1 0.231813251972198 experiment 0.916445455562688 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404392 chr11:61404401 . . 0 30 hm5C_associated_SNPs_33957 0 0 0 0 0 unknown 1 0.500231643946594 1 0.999536712106812 hm5C_site_33808 DeepMRMD:1;iRNA_m5C:0.999536712106812 33809 chr11 61404401 61404401 1 + G A SKCM 61404394 + 61404374 61404414 41 CTGGAGAAACTGCTGCCTCGCATCTGGGAGAATGTGGGCTT CTGGAGAAACTGCTGCCTCGCATCTGGAAGAATGTGGGCTT < 41bp 1 0.277724826964649 1 0.199571460485458 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404394 chr11:61404401 . . 0 28 hm5C_associated_SNPs_33958 0 0 0 0 0 unknown 1 0.500231643933489 1 0.999536712133023 hm5C_site_33809 DeepMRMD:1;iRNA_m5C:0.999536712133023 33810 chr17 17697984 17697984 1 + C T SKCM 17698000 + 17697980 17698020 41 AGAGCCTACACGGCAGTCTGCCGCTCGACAGCTTCTCCAAG AGAGTCTACACGGCAGTCTGCCGCTCGACAGCTTCTCCAAG < 41bp 1 0.0604819996516289 1 0.0148311853408813 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17698000 chr17:17697984 synonymous SNV . 0 5 hm5C_associated_SNPs_33959 0 0 1 0 0 chromatin 1 0.50023138580177 1 0.999537228396461 hm5C_site_33810 DeepMRMD:1;iRNA_m5C:0.999537228396461 33811 chr20 10023936 10023936 1 + G A SKCM 10023948 + 10023928 10023968 41 ACATTTTTGGAAAAAGGAGCCAATCCTAATGCAATCAACTC ACATTTTTAGAAAAAGGAGCCAATCCTAATGCAATCAACTC < 41bp 1 0.0498960353505179 1 0.144399076700211 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10023948 chr20:10023936 synonymous SNV . 0 9 hm5C_associated_SNPs_33960 0 0 1 0 1 membrane 1 0.500261378167103 1 0.999477243665795 hm5C_site_33811 DeepMRMD:1;iRNA_m5C:0.999477243665795 33812 chr11 33667294 33667294 1 + C T SKCM 33667280 + 33667260 33667300 41 ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCCAGGTCT ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCTAGGTCT < 41bp 1 0.260796210723881 1 0.142166167497635 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33667280 chr11:33667294 synonymous SNV . 0 35 hm5C_associated_SNPs_33962 0 0 0 0 1 exosome 1 0.500231536841221 1 0.999536926317557 hm5C_site_33812 DeepMRMD:1;iRNA_m5C:0.999536926317557 33813 chr13 49765166 49765166 1 + C T SKCM 49765179 + 49765159 49765199 41 ATCTTTACTTGTGCAGACTCCAGCTGTGCCTCCTGGCCCAT ATCTTTATTTGTGCAGACTCCAGCTGTGCCTCCTGGCCCAT < 41bp 1 0.685406699615695 1 0.355266720056534 experiment 0.629186600768611 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49765179 chr13:49765166 nonsynonymous SNV 0.998 1 8 hm5C_associated_SNPs_33963 0 0 1 0 2 Cytosol 1 0.500231640646853 1 0.999536718706294 hm5C_site_33813 DeepMRMD:1;iRNA_m5C:0.999536718706294 33814 chr19 19656475 19656475 1 + G A SKCM 19656481 + 19656461 19656501 41 CACCGGTGCCCGCGGAGGACCCAGCTGCCTTCTCCATGCTG CACCGGTGCCCGCGAAGGACCCAGCTGCCTTCTCCATGCTG < 41bp 1 0.165240163539054 1 0.154060661792755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19656481 chr19:19656475 nonsynonymous SNV 0.048 1 15 hm5C_associated_SNPs_33964 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33814 DeepMRMD:1;iRNA_m5C:0.999536712157815 33815 chr2 173429367 173429367 1 + C T SKCM 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATTGATTC < 41bp 1 0.420369127300502 1 0.0498633682727814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429367 stopgain 1.000 1 36 hm5C_associated_SNPs_33965 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_33815 DeepMRMD:1;iRNA_m5C:0.999536712157816 33816 chr2 47205970 47205970 1 + C T SKCM 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTCGAGGCATCTGAAAGGCTGTTACCCGCTT < 41bp 1 0.585549089421192 1 0.8039910197258 experiment 0.828901821157615 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205970 nonsynonymous SNV 0.005 0 33 hm5C_associated_SNPs_33966 0 0 1 0 2 Nucleus 1 0.500231655319379 0.3920179605484 0.999536689361241 hm5C_site_33816 DeepMRMD:0.3920179605484;iRNA_m5C:0.999536689361241 33817 chr7 97833460 97833460 1 + C T SKCM 97833471 + 97833451 97833491 41 CCAGCTTTTCCCTCACACACCTGACCGACTCGGACATCGAG CCAGCTTTTTCCTCACACACCTGACCGACTCGGACATCGAG < 41bp 1 0.146134928194671 1 0.0609550476074219 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833471 chr7:97833460 nonsynonymous SNV 0.898 5 10 hm5C_associated_SNPs_33968 0 0 1 0 1 Nucleus 1 0.500231446763445 1 0.99953710647311 hm5C_site_33817 DeepMRMD:1;iRNA_m5C:0.99953710647311 33818 chr3 124053173 124053173 1 + C T SKCM 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGGCCCCTGAGCCCTGGGAACTTCGAATCCCTCA < 41bp 1 0.615905426378449 1 0.749605298042297 experiment 0.768189147243101 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053173 nonsynonymous SNV 0.720 2 30 hm5C_associated_SNPs_33969 0 0 0 0 1 nucleoplasm 1 0.500231643921093 0.500789403915406 0.999536712157814 hm5C_site_33818 DeepMRMD:0.500789403915406;iRNA_m5C:0.999536712157814 33819 chr19 40711940 40711940 1 + G A SKCM 40711941 + 40711921 40711961 41 TGGACATCGTGGAACGGGAGCTGCACCTGCTCATGTGCCAG TGGACATCGTGGAACGGGAACTGCACCTGCTCATGTGCCAG < 41bp 1 0.437926954085065 1 0.147610574960709 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40711941 chr19:40711940 synonymous SNV . 0 20 hm5C_associated_SNPs_33970 0 0 1 0 0 Endoplasmic reticulum 1 0.500227503543282 1 0.999544992913436 hm5C_site_33819 DeepMRMD:1;iRNA_m5C:0.999544992913436 33820 chr17 80529642 80529642 1 + C T SKCM 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG CGCCTTACTCCTACGCGCAGCTGATAGTTTAGGCGATTACG < 41bp 1 0.0698534956545277 1 0.0646834671497345 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529642 stopgain 0.506 1 30 hm5C_associated_SNPs_33971 0 0 1 0 1 Cytosol 1 0.500231639556873 1 0.999536720886254 hm5C_site_33820 DeepMRMD:1;iRNA_m5C:0.999536720886254 33821 chr17 79408918 79408918 1 + C T SKCM 79408935 + 79408915 79408955 41 CTTCCCCAGCGTGGCCCGGGCCGCCCCTGCCCACCCCATGG CTTTCCCAGCGTGGCCCGGGCCGCCCCTGCCCACCCCATGG < 41bp 1 0.105596827057525 1 0.0940468907356262 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79408935 chr17:79408918 synonymous SNV . 0 4 hm5C_associated_SNPs_33973 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_33821 DeepMRMD:1;iRNA_m5C:0.999536712157815 33822 chr7 16823074 16823074 1 + G A SKCM 16823094 + 16823074 16823114 41 GAACCAGAAAGACCCCCGCGCGAATCCTAGTGCATTCCTTT AAACCAGAAAGACCCCCGCGCGAATCCTAGTGCATTCCTTT < 41bp 1 0.168654663799553 1 0.0892886519432068 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16823094 chr7:16823074 synonymous SNV . 0 1 hm5C_associated_SNPs_33974 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_33822 DeepMRMD:1;iRNA_m5C:0.999536712157815 33823 chr2 39009027 39009027 1 + C T SKCM 39009029 + 39009009 39009049 41 AAGGACATCTTACAGCTTCCCAATGAGAGGCCAGGAAGTGT AAGGACATCTTACAGCTTTCCAATGAGAGGCCAGGAAGTGT < 41bp 1 0.233936851164363 1 0.344755589962006 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39009029 chr2:39009027 nonsynonymous SNV 0.982 1 19 hm5C_associated_SNPs_33975 0 0 1 0 0 Ribosome 1 0.500231319111634 1 0.999537361776731 hm5C_site_33823 DeepMRMD:1;iRNA_m5C:0.999537361776731 33824 chr2 47221609 47221609 1 + C T SKCM 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC CATGGGCAAGGAGGAGAGTTCTTTTGCCACTCAGGCCCTGC < 41bp 1 0.108717843789682 1 0.029369592666626 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221609 synonymous SNV . 0 25 hm5C_associated_SNPs_33976 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33824 DeepMRMD:1;iRNA_m5C:0.999536712157815 33825 chrX 73043728 73043728 1 + C T SKCM 73043732 - 73043712 73043752 41 GGGGCTCGGAACTACATGCCCTAGGATATAAAAATGATGTT GGGGCTCGGAACTACATGCCCTAGAATATAAAAATGATGTT < 41bp 1 0.432335514242337 1 0.459568977355957 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043732 chrX:73043728 . . 0 25 hm5C_associated_SNPs_33977 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_33825 DeepMRMD:1;iRNA_m5C:0.999536712157815 33826 chrX 73043728 73043728 1 + C T SKCM 73043738 - 73043718 73043758 41 TTCTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAAT TTCTGTGGGGCTCGGAACTACATGCCCTAGAATATAAAAAT < 41bp 1 0.0640935391313685 1 0.249246180057526 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043738 chrX:73043728 . . 0 31 hm5C_associated_SNPs_33978 0 0 1 0 0 unknown 1 0.500231643922159 1 0.999536712155682 hm5C_site_33826 DeepMRMD:1;iRNA_m5C:0.999536712155682 33827 chrX 73043728 73043728 1 + C T SKCM 73043746 - 73043726 73043766 41 TGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGGAT TGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGAAT < 41bp 1 0.273857279965148 1 0.71929669380188 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043746 chrX:73043728 . . 0 39 hm5C_associated_SNPs_33979 0 0 1 0 0 unknown 1 0.500231643921092 0.56140661239624 0.999536712157815 hm5C_site_33827 DeepMRMD:0.56140661239624;iRNA_m5C:0.999536712157815 33828 chrX 73043728 73043728 1 + C T SKCM 73043748 - 73043728 73043768 41 GGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGG GGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGA < 41bp 1 0.268521224283961 1 0.254167795181274 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043748 chrX:73043728 . . 0 41 hm5C_associated_SNPs_33980 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_33828 DeepMRMD:1;iRNA_m5C:0.999536712157815 33829 chr4 3319348 3319348 1 + C T SKCM 3319346 + 3319326 3319366 41 TGTCCGGACCCCGAAGGGAGCCCCCCATTTGAGGCCGCTCA TGTCCGGACCCCGAAGGGAGCCTCCCATTTGAGGCCGCTCA < 41bp 1 0.0399014994317293 1 0.174625664949417 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3319346 chr4:3319348 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_33981 0 0 1 0 0 Nucleus 1 0.500231643888721 1 0.999536712222558 hm5C_site_33829 DeepMRMD:1;iRNA_m5C:0.999536712222558 33830 chr11 46747445 46747445 1 + C T SKCM 46747436 + 46747416 46747456 41 TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA TCAAGTCACTGTAGCGATGACTCCACGCTTCGAAGGCTCCA < 41bp 1 0.664527436758067 1 0.94365006685257 experiment 0.670945126483867 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control F2 ENSG00000180210 CDS Human protein_coding chr11:46747436 chr11:46747445 nonsynonymous SNV 0.084 2 30 hm5C_associated_SNPs_33982 0 0 1 0 1 cytosol 1 0.500235239513488 0.11269986629486 0.999529520973024 hm5C_site_33830 DeepMRMD:0.11269986629486;iRNA_m5C:0.999529520973024 33831 chr21 47754535 47754535 1 + C T SKCM 47754537 + 47754517 47754557 41 GTTCACAGTCAGTGACCACCCACCAGAACAGCGTGGGATGT GTTCACAGTCAGTGACCATCCACCAGAACAGCGTGGGATGT < 41bp 1 0.647310309221402 1 0.463636368513107 experiment 0.705379381557197 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47754537 chr21:47754535 synonymous SNV . 0 19 hm5C_associated_SNPs_33983 0 0 0 0 0 Exosome 1 0.500232090502217 1 0.999535818995565 hm5C_site_33831 DeepMRMD:1;iRNA_m5C:0.999535818995565 33832 chr6 31598926 31598926 1 + C T SKCM 31598935 + 31598915 31598955 41 GGAGCGAGACTCCTCCAGTACCTCCCCCACCACCCTATCTG GGAGCGAGACTTCTCCAGTACCTCCCCCACCACCCTATCTG < 41bp 1 0.0968459152370032 1 0.0284353494644165 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31598935 chr6:31598926 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_33985 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33832 DeepMRMD:1;iRNA_m5C:0.999536712157815 33833 chr6 31598926 31598926 1 + C T SKCM 31598940 + 31598920 31598960 41 GAGACTCCTCCAGTACCTCCCCCACCACCCTATCTGGCCAG GAGACTTCTCCAGTACCTCCCCCACCACCCTATCTGGCCAG < 41bp 1 0.143811954540788 1 0.512734532356262 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31598940 chr6:31598926 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_33986 0 0 1 0 1 Ribosome 1 0.500226429675245 0.974530935287476 0.99954714064951 hm5C_site_33833 DeepMRMD:0.974530935287476;iRNA_m5C:0.99954714064951 33834 chr18 8819049 8819049 1 + G T SKCM 8819061 + 8819041 8819081 41 CCAGGGAAGCCTCCGCATGCCCCGTCCAGTGGCCATGTGGC CCAGGGAATCCTCCGCATGCCCCGTCCAGTGGCCATGTGGC < 41bp 1 0.147510618399139 1 0.0517077147960663 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8819061 chr18:8819049 nonsynonymous SNV 0.043 1 9 hm5C_associated_SNPs_33987 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33834 DeepMRMD:1;iRNA_m5C:0.999536712157815 33835 chr4 3319347 3319347 1 + C T SKCM 3319346 + 3319326 3319366 41 TGTCCGGACCCCGAAGGGAGCCCCCCATTTGAGGCCGCTCA TGTCCGGACCCCGAAGGGAGCTCCCCATTTGAGGCCGCTCA < 41bp 1 0.221146034997052 1 0.184641361236572 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3319346 chr4:3319347 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_33988 0 0 1 0 0 Nucleus 1 0.500231643920837 1 0.999536712158325 hm5C_site_33835 DeepMRMD:1;iRNA_m5C:0.999536712158325 33836 chrX 47774358 47774358 1 + A G SKCM 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAAGCCTTCCCAGAGGAGAGTTTCTGGGAA < 41bp 1 0.213684752018544 1 0.535748302936554 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774358 nonsynonymous SNV 0.759 0 31 hm5C_associated_SNPs_33989 0 0 0 0 1 cytosol 1 0.500231643921092 0.928503394126892 0.999536712157815 hm5C_site_33836 DeepMRMD:0.928503394126892;iRNA_m5C:0.999536712157815 33837 chr4 87691040 87691040 1 + C T SKCM 87691057 + 87691037 87691077 41 GCTCTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG GCTTTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG < 41bp 1 0.350499999337938 1 0.6451016664505 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691057 chr4:87691040 synonymous SNV . 0 4 hm5C_associated_SNPs_33990 0 0 0 0 1 Ribosome 1 0.500231643921092 0.709796667099 0.999536712157815 hm5C_site_33837 DeepMRMD:0.709796667099;iRNA_m5C:0.999536712157815 33838 chr4 87691040 87691040 1 + C T SKCM 87691060 + 87691040 87691080 41 CTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATG TTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATG < 41bp 1 0.261427497142045 1 0.472986966371536 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691060 chr4:87691040 synonymous SNV . 0 1 hm5C_associated_SNPs_33991 0 0 0 0 1 Ribosome 1 0.500231591917793 1 0.999536816164413 hm5C_site_33838 DeepMRMD:1;iRNA_m5C:0.999536816164413 33839 chr1 156106056 156106056 1 + C T SKCM 156106055 + 156106035 156106075 41 GCGCAGCCGTGGCCGTGCTTCCTCTCACTCATCCCAGACAC GCGCAGCCGTGGCCGTGCTTCTTCTCACTCATCCCAGACAC < 41bp 1 0.437008659685853 1 0.200363159179688 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156106055 chr1:156106056 synonymous SNV . 0 22 hm5C_associated_SNPs_33992 1 0 1 0 1 Cytosol 1 0.500231639052708 1 0.999536721894584 hm5C_site_33839 DeepMRMD:1;iRNA_m5C:0.999536721894584 not specified not specified 33840 chr1 116206850 116206850 1 + C T SKCM 116206847 + 116206827 116206867 41 CACGCTGCAGGTGGTCCGCTCCACCGATGGCGAGTCCCGCT CACGCTGCAGGTGGTCCGCTCCATCGATGGCGAGTCCCGCT < 41bp 1 0.0930637134372516 1 0.265740990638733 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VANGL1 ENSG00000173218 CDS Human protein_coding chr1:116206847 chr1:116206850 nonsynonymous SNV 0.957 5 24 hm5C_associated_SNPs_33993 0 0 0 0 1 Ribosome 1 0.50023164392705 1 0.9995367121459 hm5C_site_33840 DeepMRMD:1;iRNA_m5C:0.9995367121459 33841 chr14 103805664 103805664 1 + C T SKCM 103805668 + 103805648 103805688 41 AATACAGGCGCCATTTCCTACGAGTAAGCAAAGTGCTCTGG AATACAGGCGCCATTTTCTACGAGTAAGCAAAGTGCTCTGG < 41bp 1 0.532707989581787 1 0.249754041433334 experiment 0.934584020836427 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805668 chr14:103805664 synonymous SNV . 0 17 hm5C_associated_SNPs_33995 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_33841 DeepMRMD:1;iRNA_m5C:0.999536712157814 33842 chr12 57600321 57600321 1 + C T SKCM 57600323 + 57600303 57600343 41 AGCCTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC AGCCTGTTCCCCGGCCACTCCCATTCGGCTTACGAGCAGGC < 41bp 1 0.0154980555059983 1 0.0990800559520721 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600323 chr12:57600321 nonsynonymous SNV 0.936 2 19 hm5C_associated_SNPs_33996 0 0 0 0 1 Exosome 1 0.500231643921088 1 0.999536712157824 hm5C_site_33842 DeepMRMD:1;iRNA_m5C:0.999536712157824 33843 chr1 235600750 235600750 1 + C T SKCM 235600742 + 235600722 235600762 41 AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGC AAGCAGAGACGGCGCGACTACTCATTATTGCCAGCATTGGC < 41bp 1 0.563159883099531 1 0.097840815782547 experiment 0.873680233800938 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235600742 chr1:235600750 synonymous SNV . 0 29 hm5C_associated_SNPs_33997 0 0 1 0 0 chromatin 1 0.500231643905282 1 0.999536712189436 hm5C_site_33843 DeepMRMD:1;iRNA_m5C:0.999536712189436 33844 chr7 44684995 44684995 1 + C T SKCM 44685003 + 44684983 44685023 41 CAGAGTCCCCTTCCCCTGAGCCGAGGCTCCCTGGCTGCTGT CAGAGTCCCCTTTCCCTGAGCCGAGGCTCCCTGGCTGCTGT < 41bp 1 0.273149110897166 1 0.524274468421936 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44685003 chr7:44684995 nonsynonymous SNV 0.995 0 13 hm5C_associated_SNPs_33998 0 0 1 0 0 Nucleus 1 0.50023164398121 0.951451063156128 0.99953671203758 hm5C_site_33844 DeepMRMD:0.951451063156128;iRNA_m5C:0.99953671203758 33845 chr5 167920929 167920929 1 + C T SKCM 167920910 + 167920890 167920930 41 GTGTTGTAGATGCTCAAAACCAAGGAACAGAAAGTTAATCC GTGTTGTAGATGCTCAAAACCAAGGAACAGAAAGTTAATTC < 41bp 1 0.695456744277732 1 0.439833641052246 experiment 0.609086511444535 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167920910 chr5:167920929 nonsynonymous SNV 0.998 5 40 hm5C_associated_SNPs_34001 0 0 1 0 2 Nucleus 1 0.500231648605894 1 0.999536702788212 hm5C_site_33845 DeepMRMD:1;iRNA_m5C:0.999536702788212 33846 chr11 46747446 46747446 1 + C T SKCM 46747436 + 46747416 46747456 41 TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA TCAAGTCACTGTAGCGATGACTCCACGCTCTGAAGGCTCCA < 41bp 1 0.645323345234181 1 0.964965760707855 experiment 0.709353309531638 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control F2 ENSG00000180210 CDS Human protein_coding chr11:46747436 chr11:46747446 synonymous SNV . 0 31 hm5C_associated_SNPs_34003 0 0 1 0 1 cytosol 1 0.5002316439264 0.07006847858429 0.9995367121472 hm5C_site_33846 DeepMRMD:0.07006847858429;iRNA_m5C:0.9995367121472 33847 chr16 675979 675979 1 + C T SKCM 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AGCGGCAGGTCCCGACGGAGCAGGCTCGCGCGTACGCAGAG < 41bp 1 0.63446892631518 1 0.775298714637756 experiment 0.731062147369641 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675974 chr16:675979 synonymous SNV . 0 26 hm5C_associated_SNPs_34004 0 0 0 0 2 Ribosome 1 0.500231636224146 0.449402570724488 0.999536727551709 hm5C_site_33847 DeepMRMD:0.449402570724488;iRNA_m5C:0.999536727551709 33848 chr4 141300281 141300281 1 + C T SKCM 141300277 + 141300257 141300297 41 GAATTTTTCTTATTGTAGACCATTCCTCAAGAATTTTGTAT GAATTTTTCTTATTGTAGACCATTTCTCAAGAATTTTGTAT < 41bp 1 0.033947382679409 1 0.0279330909252167 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCOC ENSG00000153130 CDS Human protein_coding chr4:141300277 chr4:141300281 nonsynonymous SNV 0.542 1 25 hm5C_associated_SNPs_34007 0 0 1 0 2 Ribosome 1 0.500231643935653 1 0.999536712128693 hm5C_site_33848 DeepMRMD:1;iRNA_m5C:0.999536712128693 33849 chr16 70163018 70163018 1 + C T SKCM 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTTGCCCTGGCAAGTGCTGCCTCTCAAAATGGTGAGCAGGT < 41bp 1 0.079693191155266 1 0.229767262935638 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70163018 synonymous SNV . 0 24 hm5C_associated_SNPs_34008 0 0 0 0 1 Nucleus 1 0.500232677328459 1 0.999534645343082 hm5C_site_33849 DeepMRMD:1;iRNA_m5C:0.999534645343082 33850 chr7 76109997 76109997 1 + G A SKCM 76110000 + 76109980 76110020 41 CAACGTTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTT CAACGTTTTGGGCTTGGAAGCCTGGCCCACAGCATCCCCTT < 41bp 1 0.252546225209225 1 0.139661610126495 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110000 chr7:76109997 synonymous SNV . 0 18 hm5C_associated_SNPs_34009 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33850 DeepMRMD:1;iRNA_m5C:0.999536712157815 33851 chr7 76109997 76109997 1 + G A SKCM 76110001 + 76109981 76110021 41 AACGTTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTG AACGTTTTGGGCTTGGAAGCCTGGCCCACAGCATCCCCTTG < 41bp 1 0.513985118165084 1 0.608468294143677 experiment 0.972029763669833 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110001 chr7:76109997 synonymous SNV . 0 17 hm5C_associated_SNPs_34010 0 0 0 0 1 Nucleus 1 0.500231643921093 0.783063411712646 0.999536712157815 hm5C_site_33851 DeepMRMD:0.783063411712646;iRNA_m5C:0.999536712157815 33852 chr7 76109997 76109997 1 + G A SKCM 76110005 + 76109985 76110025 41 TTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGCC TTTTGGGCTTGGAAGCCTGGCCCACAGCATCCCCTTGGGCC < 41bp 1 0.0795483210386742 1 0.0562908351421356 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110005 chr7:76109997 synonymous SNV . 0 13 hm5C_associated_SNPs_34011 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_33852 DeepMRMD:1;iRNA_m5C:0.999536712157815 33853 chr7 76109997 76109997 1 + G A SKCM 76110006 + 76109986 76110026 41 TTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGCCA TTTGGGCTTGGAAGCCTGGCCCACAGCATCCCCTTGGGCCA < 41bp 1 0.420252751195399 1 0.138836085796356 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110006 chr7:76109997 synonymous SNV . 0 12 hm5C_associated_SNPs_34012 0 0 0 0 1 Nucleus 1 0.50023163940606 1 0.999536721187879 hm5C_site_33853 DeepMRMD:1;iRNA_m5C:0.999536721187879 33854 chr7 76109997 76109997 1 + G A SKCM 76110007 + 76109987 76110027 41 TTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGCCAG TTGGGCTTGGAAGCCTGGCCCACAGCATCCCCTTGGGCCAG < 41bp 1 0.473928313243317 1 0.14803484082222 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110007 chr7:76109997 synonymous SNV . 0 11 hm5C_associated_SNPs_34013 0 0 0 0 1 Nucleus 1 0.500231643921119 1 0.999536712157763 hm5C_site_33854 DeepMRMD:1;iRNA_m5C:0.999536712157763 33855 chr3 47891189 47891189 1 + C T SKCM 47891200 + 47891180 47891220 41 CAGCGTCTTCGTCCGGGACTCCTCTCAGGTGCACCCGCTAG CAGCGTCTTTGTCCGGGACTCCTCTCAGGTGCACCCGCTAG < 41bp 1 0.104400967445977 1 0.0793721079826355 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47891200 chr3:47891189 synonymous SNV . 0 10 hm5C_associated_SNPs_34014 0 0 1 0 1 Cytosol 1 0.500231643903217 1 0.999536712193565 hm5C_site_33855 DeepMRMD:1;iRNA_m5C:0.999536712193565 33856 chr19 10794135 10794135 1 + C T SKCM 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTCTCTGACACCCCTCTCGCCCTTG < 41bp 1 0.499048043502905 1 0.131685078144073 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794135 nonsynonymous SNV 0.308 1 20 hm5C_associated_SNPs_34015 0 0 1 0 2 Cytosol 1 0.500231644780609 1 0.999536710438781 hm5C_site_33856 DeepMRMD:1;iRNA_m5C:0.999536710438781 33857 chr19 10794135 10794135 1 + C T SKCM 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTCTCTGACACCCCTCTCGCCCTTGATGCCA < 41bp 1 0.190774464892581 1 0.0346224009990692 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794135 nonsynonymous SNV 0.308 1 14 hm5C_associated_SNPs_34016 0 0 1 0 2 Cytosol 1 0.500231643921603 1 0.999536712156794 hm5C_site_33857 DeepMRMD:1;iRNA_m5C:0.999536712156794 33858 chr13 115090566 115090566 1 + C T SKCM 115090577 + 115090557 115090597 41 CCAGTGTCTCCAGAGCTTCGCAAACCCGGCCCACCACTATC CCAGTGTCTTCAGAGCTTCGCAAACCCGGCCCACCACTATC < 41bp 1 0.251979804814682 1 0.184668123722076 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115090577 chr13:115090566 nonsynonymous SNV 0.998 2 10 hm5C_associated_SNPs_34018 0 0 1 0 0 nucleus 1 0.500231643921056 1 0.999536712157889 hm5C_site_33858 DeepMRMD:1;iRNA_m5C:0.999536712157889 33859 chr19 41078018 41078018 1 + G A SKCM 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGAG < 41bp 1 0.408922106088261 1 0.879898190498352 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078018 synonymous SNV . 0 40 hm5C_associated_SNPs_34020 0 0 0 0 2 cytosol 1 0.500231643814952 0.240203619003296 0.999536712370096 hm5C_site_33859 DeepMRMD:0.240203619003296;iRNA_m5C:0.999536712370096 33860 chr9 21859395 21859395 1 + G A SKCM 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATACCTCAGATAGGGTCCACAAAATGGTCAGAAACCCT < 41bp 1 0.391359415311062 1 0.405710607767105 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859395 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_34021 0 0 1 0 2 Ribosome 1 0.500231643920982 1 0.999536712158037 hm5C_site_33860 DeepMRMD:1;iRNA_m5C:0.999536712158037 33861 chr9 21859395 21859395 1 + G A SKCM 21859402 + 21859382 21859422 41 GATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGA GATAGGGTCCACAAAATGGTCAGAAACCCTCCATAACCTGA < 41bp 1 0.637145981377848 1 0.447366714477539 experiment 0.725708037244303 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859402 chr9:21859395 nonsynonymous SNV 0.991 1 14 hm5C_associated_SNPs_34022 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33861 DeepMRMD:1;iRNA_m5C:0.999536712157815 33862 chr5 147498037 147498037 1 + G A SKCM 147498044 + 147498024 147498064 41 CAAATGAAAAATGGAAGACTCAGCTGTACTCGGGAGAGTGA CAAATGAAAAATGAAAGACTCAGCTGTACTCGGGAGAGTGA < 41bp 1 0.357169935659045 1 0.314152151346207 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498044 chr5:147498037 nonsynonymous SNV 0.974 3 14 hm5C_associated_SNPs_34023 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921067 1 0.999536712157866 hm5C_site_33862 DeepMRMD:1;iRNA_m5C:0.999536712157866 33863 chr22 35719864 35719864 1 + C T SKCM 35719884 + 35719864 35719904 41 CCATACTCTCCGGTGACACGCCCATAGCACCAACCCCGGAA TCATACTCTCCGGTGACACGCCCATAGCACCAACCCCGGAA < 41bp 1 0.179767225661516 1 0.0950077772140503 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719884 chr22:35719864 nonsynonymous SNV 0.001 1 1 hm5C_associated_SNPs_34024 0 0 1 0 1 Cytosol 1 0.500231644619162 1 0.999536710761676 hm5C_site_33863 DeepMRMD:1;iRNA_m5C:0.999536710761676 33864 chr10 5147814 5147814 1 + G A SKCM 5147798 + 5147778 5147818 41 TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGGACAT TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGAACAT < 41bp 1 0.158565668674859 1 0.111565560102463 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5147798 chr10:5147814 nonsynonymous SNV 0.868 4 37 hm5C_associated_SNPs_34025 0 0 1 0 2 Ribosome 1 0.500257358528702 1 0.999485282942596 hm5C_site_33864 DeepMRMD:1;iRNA_m5C:0.999485282942596 33865 chr7 4002352 4002352 1 + C T SKCM 4002345 + 4002325 4002365 41 CCATCTCCATCAGCAGGCTCCAGAATCCTCGATACAAAGTG CCATCTCCATCAGCAGGCTCCAGAATCTTCGATACAAAGTG < 41bp 1 0.193049028747918 1 0.485606074333191 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4002345 chr7:4002352 nonsynonymous SNV 0.629 1 28 hm5C_associated_SNPs_34026 0 0 1 0 1 cytosol 1 0.500229431846864 1 0.999541136306272 hm5C_site_33865 DeepMRMD:1;iRNA_m5C:0.999541136306272 33866 chr1 156876660 156876660 1 + G A SKCM 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAA < 41bp 1 0.329607745037325 1 0.169449716806412 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876660 nonsynonymous SNV 0.987 0 41 hm5C_associated_SNPs_34027 0 0 0 0 1 cytosol 1 0.500231631469997 1 0.999536737060005 hm5C_site_33866 DeepMRMD:1;iRNA_m5C:0.999536737060005 33867 chrX 70516801 70516801 1 + G A SKCM 70516812 + 70516792 70516832 41 CAGCAGCAGGACCAAGTGGACCGCAACATCAAGGAGGCTCG CAGCAGCAGAACCAAGTGGACCGCAACATCAAGGAGGCTCG < 41bp 1 0.524141697323555 1 0.192939043045044 experiment 0.95171660535289 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516812 chrX:70516801 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_34029 0 0 1 0 0 Nucleus 1 0.500231645527689 1 0.999536708944622 hm5C_site_33867 DeepMRMD:1;iRNA_m5C:0.999536708944622 33868 chrX 70516801 70516801 1 + G A SKCM 70516813 + 70516793 70516833 41 AGCAGCAGGACCAAGTGGACCGCAACATCAAGGAGGCTCGT AGCAGCAGAACCAAGTGGACCGCAACATCAAGGAGGCTCGT < 41bp 1 0.646162586785877 1 0.49195584654808 experiment 0.707674826428246 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516813 chrX:70516801 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_34030 0 0 1 0 0 Nucleus 1 0.500231643920612 1 0.999536712158776 hm5C_site_33868 DeepMRMD:1;iRNA_m5C:0.999536712158776 33869 chr9 137666739 137666739 1 + C T SKCM 137666719 + 137666699 137666739 41 TTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCC TTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCT < 41bp 1 0.288363588983042 1 0.403935194015503 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666719 chr9:137666739 nonsynonymous SNV 0.986 4 41 hm5C_associated_SNPs_34031 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_33869 DeepMRMD:1;iRNA_m5C:0.999536712157815 33870 chr9 137666739 137666739 1 + C T SKCM 137666720 + 137666700 137666740 41 TTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCCA TTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCTA < 41bp 1 0.546982578885762 1 0.770448982715607 experiment 0.906034842228476 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666720 chr9:137666739 nonsynonymous SNV 0.986 4 40 hm5C_associated_SNPs_34032 0 0 0 0 1 Nucleus 1 0.500231643921092 0.459102034568786 0.999536712157815 hm5C_site_33870 DeepMRMD:0.459102034568786;iRNA_m5C:0.999536712157815 33871 chr11 75279845 75279845 1 + C T SKCM 75279855 + 75279835 75279875 41 CGGTCCTATACCGTGGGTGTCATGATGATGCACCGGACAGG CGGTCCTATATCGTGGGTGTCATGATGATGCACCGGACAGG < 41bp 1 0.579348888533251 1 0.227681159973145 experiment 0.841302222933499 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279855 chr11:75279845 nonsynonymous SNV 0.960 5 11 hm5C_associated_SNPs_34033 0 0 1 0 2 Ribosome 1 0.500234230278413 1 0.999531539443173 hm5C_site_33871 DeepMRMD:1;iRNA_m5C:0.999531539443173 33872 chr9 137666738 137666738 1 + C T SKCM 137666718 + 137666698 137666738 41 GTTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACC GTTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACT < 41bp 1 0.12804646549336 1 0.0490949153900146 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666718 chr9:137666738 nonsynonymous SNV 0.978 4 41 hm5C_associated_SNPs_34034 0 0 0 0 1 Nucleus 1 0.500231643921187 1 0.999536712157625 hm5C_site_33872 DeepMRMD:1;iRNA_m5C:0.999536712157625 33873 chr9 137666738 137666738 1 + C T SKCM 137666719 + 137666699 137666739 41 TTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCC TTTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACTC < 41bp 1 0.336078121554234 1 0.472459018230438 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666719 chr9:137666738 nonsynonymous SNV 0.978 4 40 hm5C_associated_SNPs_34035 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157817 hm5C_site_33873 DeepMRMD:1;iRNA_m5C:0.999536712157817 33874 chr9 137666738 137666738 1 + C T SKCM 137666720 + 137666700 137666740 41 TTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCCA TTTAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACTCA < 41bp 1 0.494043437456634 1 0.717973053455353 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137666720 chr9:137666738 nonsynonymous SNV 0.978 4 39 hm5C_associated_SNPs_34036 0 0 0 0 1 Nucleus 1 0.500231643921093 0.564053893089294 0.999536712157815 hm5C_site_33874 DeepMRMD:0.564053893089294;iRNA_m5C:0.999536712157815 33875 chr10 5147813 5147813 1 + G C SKCM 5147798 + 5147778 5147818 41 TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGGACAT TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGACGACAT < 41bp 1 0.196784137824868 1 0.109783947467804 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5147798 chr10:5147813 nonsynonymous SNV 0.683 0 36 hm5C_associated_SNPs_34037 0 0 1 0 2 Ribosome 1 0.500238131291172 1 0.999523737417656 hm5C_site_33875 DeepMRMD:1;iRNA_m5C:0.999523737417656 33876 chr4 20568969 20568969 1 + C T SKCM 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCTAGTTGACTTTTACCGATGCACCTGTCCATATGG < 41bp 1 0.130839043438747 1 0.525822341442108 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568969 nonsynonymous SNV 0.965 3 8 hm5C_associated_SNPs_34038 0 0 1 0 2 Ribosome 1 0.500230578582354 0.948355317115784 0.999538842835292 hm5C_site_33876 DeepMRMD:0.948355317115784;iRNA_m5C:0.999538842835292 33877 chr4 20568969 20568969 1 + C T SKCM 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCTAGTTGACTTTTACCGATGCACCTGTCCATATGGT < 41bp 1 0.134980955560538 1 0.736571907997131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568969 nonsynonymous SNV 0.965 3 7 hm5C_associated_SNPs_34039 0 0 1 0 2 Ribosome 1 0.500231713782277 0.526856184005738 0.999536572435445 hm5C_site_33877 DeepMRMD:0.526856184005738;iRNA_m5C:0.999536572435445 33878 chr3 184106424 184106424 1 + G A SKCM 184106407 + 184106387 184106427 41 CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGATGGGCCC CCCACCCCCAGCTGGGGGACCCCATGCAGGCTGATGGACCC < 41bp 1 0.194303008609276 1 0.19364395737648 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHRD ENSG00000090539 CDS Human protein_coding chr3:184106407 chr3:184106424 synonymous SNV . 0 38 hm5C_associated_SNPs_34040 0 0 1 0 1 nucleus 1 0.500231644884732 1 0.999536710230536 hm5C_site_33878 DeepMRMD:1;iRNA_m5C:0.999536710230536 33879 chr3 48506019 48506019 1 + C T SKCM 48506023 + 48506003 48506043 41 TTGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAAC TTGGTGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAAC < 41bp 1 0.125795484128203 1 0.0327857732772827 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506023 chr3:48506019 synonymous SNV . 0 17 hm5C_associated_SNPs_34041 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_33879 DeepMRMD:1;iRNA_m5C:0.999536712157815 33880 chr3 48506019 48506019 1 + C T SKCM 48506024 + 48506004 48506044 41 TGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACT TGGTGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAACT < 41bp 1 0.439540933114171 1 0.496870934963226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506024 chr3:48506019 synonymous SNV . 0 16 hm5C_associated_SNPs_34042 0 0 1 0 2 chromatin 1 0.500231643725062 1 0.999536712549876 hm5C_site_33880 DeepMRMD:1;iRNA_m5C:0.999536712549876 33881 chr3 48506019 48506019 1 + C T SKCM 48506025 + 48506005 48506045 41 GGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTG GGTGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAACTG < 41bp 1 0.300737411004861 1 0.0565172135829926 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506025 chr3:48506019 synonymous SNV . 0 15 hm5C_associated_SNPs_34043 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_33881 DeepMRMD:1;iRNA_m5C:0.999536712157815 33882 chr3 48506019 48506019 1 + C T SKCM 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAACTGC < 41bp 1 0.294563117695977 1 0.151283591985703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506019 synonymous SNV . 0 14 hm5C_associated_SNPs_34044 0 0 1 0 2 chromatin 1 0.500231612409518 1 0.999536775180965 hm5C_site_33882 DeepMRMD:1;iRNA_m5C:0.999536775180965 33883 chr3 48506019 48506019 1 + C T SKCM 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCCTTTGCCCCCAGTCACTGGCTCCAACTGCC < 41bp 1 0.251420804076514 1 0.160490572452545 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506019 synonymous SNV . 0 13 hm5C_associated_SNPs_34045 0 0 1 0 2 chromatin 1 0.500231643921256 1 0.999536712157488 hm5C_site_33883 DeepMRMD:1;iRNA_m5C:0.999536712157488 33884 chr10 17271961 17271961 1 + G A SKCM 17271952 + 17271932 17271972 41 GTCGAGGTGGAGCGCGACAACCTGGCCGAGGACATCATGCG GTCGAGGTGGAGCGCGACAACCTGGCCGAAGACATCATGCG < 41bp 1 0.446413730420147 1 0.416986048221588 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271952 chr10:17271961 synonymous SNV . 0 30 hm5C_associated_SNPs_34046 0 0 1 0 1 Ribosome 1 0.500231643921097 1 0.999536712157805 hm5C_site_33884 DeepMRMD:1;iRNA_m5C:0.999536712157805 33885 chr19 34302347 34302347 1 + C T SKCM 34302343 + 34302323 34302363 41 AAGGCCCTCATCGAGGAGGTCTTCCCCGAGACCGGAGACGT AAGGCCCTCATCGAGGAGGTCTTCTCCGAGACCGGAGACGT < 41bp 1 0.137928760160113 1 0.0426745414733887 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34302343 chr19:34302347 nonsynonymous SNV 0.980 3 25 hm5C_associated_SNPs_34047 0 0 1 0 0 Cytosol 1 0.500231643886039 1 0.999536712227922 hm5C_site_33885 DeepMRMD:1;iRNA_m5C:0.999536712227922 33886 chr2 47221585 47221585 1 + C T SKCM 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC TATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC < 41bp 1 0.0801956004245774 1 0.0227203965187073 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221585 synonymous SNV . 0 1 hm5C_associated_SNPs_34048 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33886 DeepMRMD:1;iRNA_m5C:0.999536712157815 33887 chr3 48506018 48506018 1 + C T SKCM 48506023 + 48506003 48506043 41 TTGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAAC TTGGTGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAAC < 41bp 1 0.109880533994169 1 0.0394130945205688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506023 chr3:48506018 nonsynonymous SNV 0.658 1 16 hm5C_associated_SNPs_34049 0 0 1 0 2 chromatin 1 0.500233182177739 1 0.999533635644523 hm5C_site_33887 DeepMRMD:1;iRNA_m5C:0.999533635644523 33888 chr3 48506018 48506018 1 + C T SKCM 48506024 + 48506004 48506044 41 TGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACT TGGTGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAACT < 41bp 1 0.414677780624613 1 0.314454078674316 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506024 chr3:48506018 nonsynonymous SNV 0.658 1 15 hm5C_associated_SNPs_34050 0 0 1 0 2 chromatin 1 0.500231626434476 1 0.999536747131047 hm5C_site_33888 DeepMRMD:1;iRNA_m5C:0.999536747131047 33889 chr3 48506018 48506018 1 + C T SKCM 48506025 + 48506005 48506045 41 GGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTG GGTGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAACTG < 41bp 1 0.296349018965909 1 0.051773726940155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506025 chr3:48506018 nonsynonymous SNV 0.658 1 14 hm5C_associated_SNPs_34051 0 0 1 0 2 chromatin 1 0.500231028441162 1 0.999537943117677 hm5C_site_33889 DeepMRMD:1;iRNA_m5C:0.999537943117677 33890 chr3 48506018 48506018 1 + C T SKCM 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAACTGC < 41bp 1 0.2895136515047 1 0.130939483642578 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506018 nonsynonymous SNV 0.658 1 13 hm5C_associated_SNPs_34052 0 0 1 0 2 chromatin 1 0.500231643045807 1 0.999536713908386 hm5C_site_33890 DeepMRMD:1;iRNA_m5C:0.999536713908386 33891 chr3 48506018 48506018 1 + C T SKCM 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCTCTTGCCCCCAGTCACTGGCTCCAACTGCC < 41bp 1 0.227240150016027 1 0.115539371967316 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506018 nonsynonymous SNV 0.658 1 12 hm5C_associated_SNPs_34053 0 0 1 0 2 chromatin 1 0.500231456320257 1 0.999537087359485 hm5C_site_33891 DeepMRMD:1;iRNA_m5C:0.999537087359485 33892 chr1 16257964 16257964 1 + C T SKCM 16257979 + 16257959 16257999 41 TTTTCCCAGGCAGAGAGCAACGTAGATCCAGAGCCTGACAG TTTTCTCAGGCAGAGAGCAACGTAGATCCAGAGCCTGACAG < 41bp 1 0.243279031614794 1 0.0915248990058899 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPEN ENSG00000065526 CDS Human protein_coding chr1:16257979 chr1:16257964 synonymous SNV . 0 6 hm5C_associated_SNPs_34054 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643932746 1 0.999536712134509 hm5C_site_33892 DeepMRMD:1;iRNA_m5C:0.999536712134509 33893 chr5 36985776 36985776 1 + C T SKCM 36985791 + 36985771 36985811 41 CAGAGCGACATCGAGGGGATCAGTCTAGGGTTCGAAGACCA CAGAGTGACATCGAGGGGATCAGTCTAGGGTTCGAAGACCA < 41bp 1 0.140721171133601 1 0.0675322413444519 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:36985791 chr5:36985776 stopgain 1.000 1 6 hm5C_associated_SNPs_34055 1 0 1 0 0 Nucleus 1 0.500231645265883 1 0.999536709468235 hm5C_site_33893 DeepMRMD:1;iRNA_m5C:0.999536709468235 Cornelia de Lange syndrome 1 Cornelia de Lange syndrome 1 33894 chr3 126724987 126724987 1 + G A SKCM 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGAACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC < 41bp 1 0.284389522948544 1 0.161382675170898 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126724987 nonsynonymous SNV 0.999 0 7 hm5C_associated_SNPs_34056 0 0 1 0 2 Ribosome 1 0.500231643480045 1 0.999536713039909 hm5C_site_33894 DeepMRMD:1;iRNA_m5C:0.999536713039909 33895 chr20 31374370 31374370 1 + C T SKCM 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGGCACAGGCCTTCCCCACGTTCTACCCGAGGCCG < 41bp 1 0.315527416008516 1 0.38480281829834 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374370 synonymous SNV . 0 30 hm5C_associated_SNPs_34057 0 0 0 0 1 chromatin 1 0.500231643924218 1 0.999536712151564 hm5C_site_33895 DeepMRMD:1;iRNA_m5C:0.999536712151564 33896 chr20 31374370 31374370 1 + C T SKCM 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGAGAGGCACAGGCCTTCCCCACGTTCTACCCGAGGCCGG < 41bp 1 0.634011186401334 1 0.565794944763184 experiment 0.731977627197332 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374370 synonymous SNV . 0 29 hm5C_associated_SNPs_34058 0 0 0 0 1 chromatin 1 0.500231643921093 0.868410110473632 0.999536712157815 hm5C_site_33896 DeepMRMD:0.868410110473632;iRNA_m5C:0.999536712157815 33897 chr16 5127990 5127990 1 + G A SKCM 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ATGAAGCTGAGCAGCATGCACTCTCCGTTCAGGGCCCGGTA < 41bp 1 0.300701779279413 1 0.0516793727874756 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5127990 nonsynonymous SNV 0.487 1 10 hm5C_associated_SNPs_34059 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_33897 DeepMRMD:1;iRNA_m5C:0.999536712157816 33898 chr1 151006421 151006421 1 + C T SKCM 151006407 + 151006387 151006427 41 TCTCGAAAGAAACTTCTGCCCCTGCTCCAGGAAGCCCTGTC TCTCGAAAGAAACTTCTGCCCCTGCTCCAGGAAGTCCTGTC < 41bp 1 0.149535552085959 1 0.0640812814235687 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:151006407 chr1:151006421 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_34060 0 0 1 0 0 chromatin 1 0.500231644821401 1 0.999536710357199 hm5C_site_33898 DeepMRMD:1;iRNA_m5C:0.999536710357199 33899 chr13 48936978 48936978 1 + C G SKCM 48936995 + 48936975 48937015 41 GTTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA GTTGACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCA < 41bp 1 0.640872638712994 1 0.834452927112579 experiment 0.718254722574012 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RB1 ENSG00000139687 CDS Human protein_coding chr13:48936995 chr13:48936978 stopgain 1.000 1 4 hm5C_associated_SNPs_34061 0 0 1 0 1 Nucleus 1 0.500231643923086 0.331094145774842 0.999536712153828 hm5C_site_33899 DeepMRMD:0.331094145774842;iRNA_m5C:0.999536712153828 33900 chr3 50131270 50131270 1 + A T SKCM 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCTTGCTGCGCGGCCTTCCCAT < 41bp 1 0.451765629602454 1 0.150620222091675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131270 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_34062 0 0 1 0 2 Cytosol 1 0.500231643923949 1 0.999536712152103 hm5C_site_33900 DeepMRMD:1;iRNA_m5C:0.999536712152103 33901 chr16 2577838 2577838 1 + C T SKCM 2577853 + 2577833 2577873 41 CACCTCCGCTCCTTCGAGGCCGATGCCTTCCAGGACTTGCT CACCTTCGCTCCTTCGAGGCCGATGCCTTCCAGGACTTGCT < 41bp 1 0.124460144750119 1 0.0943412482738495 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577853 chr16:2577838 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_34063 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33901 DeepMRMD:1;iRNA_m5C:0.999536712157815 33902 chr17 38512373 38512373 1 + G C SKCM 38512361 + 38512341 38512381 41 GAGGGCCTGGACACTCTGAGCGGACAGCCGGGGGGTGGGGG GAGGGCCTGGACACTCTGAGCGGACAGCCGGGCGGTGGGGG < 41bp 1 0.363955829230059 1 0.768040537834167 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RARA ENSG00000131759 CDS Human protein_coding chr17:38512361 chr17:38512373 synonymous SNV . 0 33 hm5C_associated_SNPs_34064 0 0 1 0 0 chromatin 1 0.500231643921092 0.463918924331666 0.999536712157815 hm5C_site_33902 DeepMRMD:0.463918924331666;iRNA_m5C:0.999536712157815 33903 chr7 94293208 94293208 1 + G A SKCM 94293216 + 94293196 94293236 41 GATTTCTCAGTTGATCGTGTCCGTGTCTGCTTCGTGACAAG GATTTCTCAGTTAATCGTGTCCGTGTCTGCTTCGTGACAAG < 41bp 1 0.141729412846132 1 0.039812833070755 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PEG10 ENSG00000242265 CDS Human protein_coding chr7:94293216 chr7:94293208 nonsynonymous SNV 0.713 2 13 hm5C_associated_SNPs_34065 0 0 1 0 0 Endoplasmic reticulum 1 0.500211574277442 1 0.999576851445116 hm5C_site_33903 DeepMRMD:1;iRNA_m5C:0.999576851445116 33904 chr17 81042985 81042985 1 + C T SKCM 81042993 + 81042973 81043013 41 CTTCACGGACTCCTCGGGGGCCAATATTTATTTGGAAAAAA CTTCACGGACTCTTCGGGGGCCAATATTTATTTGGAAAAAA < 41bp 1 0.0395490661626299 1 0.0682787001132965 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METRNL ENSG00000176845 CDS Human protein_coding chr17:81042993 chr17:81042985 synonymous SNV . 0 13 hm5C_associated_SNPs_34067 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33904 DeepMRMD:1;iRNA_m5C:0.999536712157815 33905 chr7 142459847 142459847 1 + C T SKCM 142459828 + 142459808 142459848 41 GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCT GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATTT < 41bp 1 0.680556141432566 1 0.163861811161041 experiment 0.638887717134867 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459828 chr7:142459847 synonymous SNV . 0 40 hm5C_associated_SNPs_34068 0 0 0 0 1 Cytosol 1 0.500230750055031 1 0.999538499889938 hm5C_site_33905 DeepMRMD:1;iRNA_m5C:0.999538499889938 33906 chr7 142459847 142459847 1 + C T SKCM 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATTTCTGGCT < 41bp 1 0.619099601162826 1 0.161493808031082 experiment 0.761800797674348 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459847 synonymous SNV . 0 34 hm5C_associated_SNPs_34069 0 0 0 0 1 Cytosol 1 0.500231747674242 1 0.999536504651516 hm5C_site_33906 DeepMRMD:1;iRNA_m5C:0.999536504651516 33907 chr7 142459847 142459847 1 + C T SKCM 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACGAAGTGCCTCATTTCTGGCTGGGGCAA < 41bp 1 0.44526643588866 1 0.0766258835792542 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459847 synonymous SNV . 0 27 hm5C_associated_SNPs_34070 0 0 0 0 1 Cytosol 1 0.500229988447976 1 0.999540023104048 hm5C_site_33907 DeepMRMD:1;iRNA_m5C:0.999540023104048 33908 chr7 142459847 142459847 1 + C T SKCM 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAGTGCCTCATTTCTGGCTGGGGCAAC < 41bp 1 0.525375277134292 1 0.0487435460090637 experiment 0.949249445731416 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459847 synonymous SNV . 0 26 hm5C_associated_SNPs_34071 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33908 DeepMRMD:1;iRNA_m5C:0.999536712157815 33909 chr7 142459847 142459847 1 + C T SKCM 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAGTGCCTCATTTCTGGCTGGGGCAACAC < 41bp 1 0.337572181721941 1 0.0138657093048096 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459847 synonymous SNV . 0 24 hm5C_associated_SNPs_34072 0 0 0 0 1 Cytosol 1 0.50023164483595 1 0.9995367103281 hm5C_site_33909 DeepMRMD:1;iRNA_m5C:0.9995367103281 33910 chr7 142459847 142459847 1 + C T SKCM 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATTTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA < 41bp 1 0.349544121132758 1 0.169057786464691 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459847 synonymous SNV . 0 6 hm5C_associated_SNPs_34073 0 0 0 0 1 Cytosol 1 0.50023164392172 1 0.99953671215656 hm5C_site_33910 DeepMRMD:1;iRNA_m5C:0.99953671215656 33911 chr7 142459847 142459847 1 + C T SKCM 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG TTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG < 41bp 1 0.405992412154597 1 0.399063408374786 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459847 synonymous SNV . 0 1 hm5C_associated_SNPs_34075 0 0 0 0 1 Cytosol 1 0.500344981884097 1 0.999310036231806 hm5C_site_33911 DeepMRMD:1;iRNA_m5C:0.999310036231806 33912 chr17 40932965 40932965 1 + C T SKCM 40932967 + 40932947 40932987 41 CTCACCCGCTCCGGACCCCCCCGATCCTCCGGACTCCGCTG CTCACCCGCTCCGGACCCTCCCGATCCTCCGGACTCCGCTG < 41bp 1 0.272784088769187 1 0.382208585739136 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WNK4 ENSG00000126562 CDS Human protein_coding chr17:40932967 chr17:40932965 synonymous SNV . 0 19 hm5C_associated_SNPs_34076 0 0 0 0 0 chromatin 1 0.500231643844146 1 0.999536712311708 hm5C_site_33912 DeepMRMD:1;iRNA_m5C:0.999536712311708 33913 chr1 43296183 43296183 1 + C T SKCM 43296173 + 43296153 43296193 41 TCTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT TCTGGCTGCCTCATCCCTCTCGTCTTCCTCTGGCTGTCTGT < 41bp 1 0.251838778690441 1 0.146227568387985 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ERMAP ENSG00000164010 CDS Human protein_coding chr1:43296173 chr1:43296183 nonsynonymous SNV 0.001 1 31 hm5C_associated_SNPs_34077 0 0 1 0 2 chromatin 1 0.500239472200499 1 0.999521055599002 hm5C_site_33913 DeepMRMD:1;iRNA_m5C:0.999521055599002 33914 chr1 46739339 46739339 1 + C T SKCM 46739322 + 46739302 46739342 41 TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGCCGT TGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGTCGT < 41bp 1 0.645406553631365 1 0.39920973777771 experiment 0.709186892737271 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739322 chr1:46739339 synonymous SNV . 0 38 hm5C_associated_SNPs_34078 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33914 DeepMRMD:1;iRNA_m5C:0.999536712157815 33915 chr1 43296182 43296182 1 + C T SKCM 43296173 + 43296153 43296193 41 TCTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT TCTGGCTGCCTCATCCCTCTCGTCTTCCTTCGGCTGTCTGT < 41bp 1 0.272829322000439 1 0.102446526288986 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ERMAP ENSG00000164010 CDS Human protein_coding chr1:43296173 chr1:43296182 synonymous SNV . 0 30 hm5C_associated_SNPs_34079 0 0 1 0 2 chromatin 1 0.500231643935218 1 0.999536712129565 hm5C_site_33915 DeepMRMD:1;iRNA_m5C:0.999536712129565 33916 chr22 24466776 24466776 1 + A T SKCM 24466762 + 24466742 24466782 41 CTGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCA CTGTACTAGGACTCCTTGCTCCGGCTGAAGGACTTTCGGCA < 41bp 1 0.219149212181277 1 0.900994300842285 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466762 chr22:24466776 nonsynonymous SNV 0.503 0 35 hm5C_associated_SNPs_34080 0 0 1 0 1 Cytosol 1 0.500231643921111 0.19801139831543 0.999536712157779 hm5C_site_33916 DeepMRMD:0.19801139831543;iRNA_m5C:0.999536712157779 33917 chr22 24466776 24466776 1 + A T SKCM 24466763 + 24466743 24466783 41 TGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCAG TGTACTAGGACTCCTTGCTCCGGCTGAAGGACTTTCGGCAG < 41bp 1 0.458766861057158 1 0.572164535522461 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466763 chr22:24466776 nonsynonymous SNV 0.503 0 34 hm5C_associated_SNPs_34081 0 0 1 0 1 Cytosol 1 0.500231645441398 0.855670928955078 0.999536709117205 hm5C_site_33917 DeepMRMD:0.855670928955078;iRNA_m5C:0.999536709117205 33918 chr22 24466776 24466776 1 + A T SKCM 24466766 + 24466746 24466786 41 ACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCAGTGT ACTAGGACTCCTTGCTCCGGCTGAAGGACTTTCGGCAGTGT < 41bp 1 0.434439591648864 1 0.286427736282349 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466766 chr22:24466776 nonsynonymous SNV 0.503 0 31 hm5C_associated_SNPs_34082 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_33918 DeepMRMD:1;iRNA_m5C:0.999536712157815 33919 chr16 15788051 15788051 1 + C T SKCM 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGGACCCCCTTCACACCTGCGGCCCG < 41bp 1 0.246519635804988 1 0.057820737361908 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788051 nonsynonymous SNV 0.097 4 25 hm5C_associated_SNPs_34084 0 0 1 0 2 chromatin 1 0.500231638706585 1 0.99953672258683 hm5C_site_33919 DeepMRMD:1;iRNA_m5C:0.99953672258683 33920 chr11 63996771 63996771 1 + G A SKCM 63996766 + 63996746 63996786 41 CAGCCCCTGCTGTTGGGCATCGCCCGAAATGAGACCAGTGC CAGCCCCTGCTGTTGGGCATCGCCCAAAATGAGACCAGTGC < 41bp 1 0.433792592796826 1 0.145754188299179 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996766 chr11:63996771 nonsynonymous SNV 0.760 1 26 hm5C_associated_SNPs_34085 0 0 0 0 2 Ribosome 1 0.500231643921085 1 0.999536712157831 hm5C_site_33920 DeepMRMD:1;iRNA_m5C:0.999536712157831 33921 chr11 64802578 64802578 1 + C T SKCM 64802597 + 64802577 64802617 41 TCCTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGAC TTCTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGAC < 41bp 1 0.100294397351567 1 0.0644792318344116 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802597 chr11:64802578 synonymous SNV . 0 2 hm5C_associated_SNPs_34086 0 0 1 0 0 Ribosome 1 0.500231648295421 1 0.999536703409159 hm5C_site_33921 DeepMRMD:1;iRNA_m5C:0.999536703409159 33922 chr11 64802578 64802578 1 + C T SKCM 64802598 + 64802578 64802618 41 CCTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACC TCTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACC < 41bp 1 0.0878550197421637 1 0.121080577373505 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802598 chr11:64802578 synonymous SNV . 0 1 hm5C_associated_SNPs_34087 0 0 1 0 0 Ribosome 1 0.500231628141938 1 0.999536743716124 hm5C_site_33922 DeepMRMD:1;iRNA_m5C:0.999536743716124 33923 chr16 50813882 50813882 1 + C T SKCM 50813901 + 50813881 50813921 41 CCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC CTTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC < 41bp 1 0.301973394135545 1 0.240381181240082 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CYLD ENSG00000083799 CDS Human protein_coding chr16:50813901 chr16:50813882 nonsynonymous SNV 0.952 4 2 hm5C_associated_SNPs_34088 0 0 0 0 1 Ribosome 1 0.500231645078377 1 0.999536709843246 hm5C_site_33923 DeepMRMD:1;iRNA_m5C:0.999536709843246 33924 chr20 35857094 35857094 1 + C T SKCM 35857080 + 35857060 35857100 41 GATTGAATTTGACTCTGCCTCTGGCACCTACACTCTCTACT GATTGAATTTGACTCTGCCTCTGGCACCTACACTTTCTACT < 41bp 1 0.433344219304856 1 0.45099875330925 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35857080 chr20:35857094 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_34090 0 0 1 0 1 Ribosome 1 0.500231643686401 1 0.999536712627199 hm5C_site_33924 DeepMRMD:1;iRNA_m5C:0.999536712627199 33925 chrX 19373831 19373831 1 + C A SKCM 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGCGTCAGAGAGGCAACAAGGTTTGCTGCTGCCT < 41bp 1 0.589452067598485 1 0.469660669565201 experiment 0.82109586480303 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373831 synonymous SNV . 0 14 hm5C_associated_SNPs_34091 0 0 1 0 2 Ribosome 1 0.500231914046556 1 0.999536171906887 hm5C_site_33925 DeepMRMD:1;iRNA_m5C:0.999536171906887 33926 chr10 105184854 105184854 1 + C T SKCM 105184840 + 105184820 105184860 41 GCCACCTGGCAGCTTTCTCCCTGACCTCTCACCTCAACGAC GCCACCTGGCAGCTTTCTCCCTGACCTCTCACCTTAACGAC < 41bp 1 0.276507023646092 1 0.155598878860474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105184840 chr10:105184854 synonymous SNV . 0 35 hm5C_associated_SNPs_34093 0 0 1 0 0 Nucleus 1 0.500231643259001 1 0.999536713481999 hm5C_site_33926 DeepMRMD:1;iRNA_m5C:0.999536713481999 33927 chr9 138378825 138378825 1 + C T SKCM 138378822 + 138378802 138378842 41 GGCCCAGCTCCCAGCCCCGGCTCCCTGTCTGATGACAGCAG GGCCCAGCTCCCAGCCCCGGCTCTCTGTCTGATGACAGCAG < 41bp 1 0.0556259580199867 1 0.181098431348801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378822 chr9:138378825 synonymous SNV . 0 24 hm5C_associated_SNPs_34094 0 0 0 0 0 Ribosome 1 0.500231642596122 1 0.999536714807757 hm5C_site_33927 DeepMRMD:1;iRNA_m5C:0.999536714807757 33928 chrX 23801995 23801995 1 + C T SKCM 23802013 + 23801993 23802033 41 TCCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA TCTGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA < 41bp 1 0.0364739384414354 1 0.0973440110683441 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066 CDS Human protein_coding chrX:23802013 chrX:23801995 nonsynonymous SNV 0.860 0 3 hm5C_associated_SNPs_34095 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_33928 DeepMRMD:1;iRNA_m5C:0.999536712157814 33929 chrX 23801995 23801995 1 + C T SKCM 23802014 + 23801994 23802034 41 CCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC CTGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC < 41bp 1 0.0377555207127546 1 0.0501357614994049 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066 CDS Human protein_coding chrX:23802014 chrX:23801995 nonsynonymous SNV 0.860 0 2 hm5C_associated_SNPs_34096 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33929 DeepMRMD:1;iRNA_m5C:0.999536712157815 33930 chr7 98591321 98591321 1 + C T SKCM 98591325 + 98591305 98591345 41 CCCTGGAAGGCATCGTCGATCAGATGGTCTGGTTCAGAGAA CCCTGGAAGGCATCGTTGATCAGATGGTCTGGTTCAGAGAA < 41bp 1 0.335637671082517 1 0.569168210029602 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98591325 chr7:98591321 synonymous SNV . 0 17 hm5C_associated_SNPs_34097 0 0 1 0 1 Nucleus 1 0.500231641939432 0.861663579940796 0.999536716121136 hm5C_site_33930 DeepMRMD:0.861663579940796;iRNA_m5C:0.999536716121136 33931 chr4 20555445 20555445 1 + C T SKCM 20555440 + 20555420 20555460 41 TTTTCCAGAGCAATTGGAGCCAACCCTCTTTACTGTGATTG TTTTCCAGAGCAATTGGAGCCAACCTTCTTTACTGTGATTG < 41bp 1 0.146756979504483 1 0.179114162921906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20555440 chr4:20555445 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_34098 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33931 DeepMRMD:1;iRNA_m5C:0.999536712157815 33932 chr6 35715398 35715398 1 + C T SKCM 35715401 + 35715381 35715421 41 TGGCACAGAAGAATGACCTTCTCTATGACATTCTCAACTGC TGGCACAGAAGAATGACTTTCTCTATGACATTCTCAACTGC < 41bp 1 0.603529534415455 1 0.892318844795227 experiment 0.79294093116909 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715401 chr6:35715398 nonsynonymous SNV 0.999 3 18 hm5C_associated_SNPs_34100 0 0 0 0 2 exosome 1 0.500231643973368 0.215362310409546 0.999536712053264 hm5C_site_33932 DeepMRMD:0.215362310409546;iRNA_m5C:0.999536712053264 33933 chr17 78022406 78022406 1 + C T SKCM 78022426 + 78022406 78022446 41 CCCACCCCAGGGAAGGAGACCTGCCAGTGTTCCAGGACCAG TCCACCCCAGGGAAGGAGACCTGCCAGTGTTCCAGGACCAG < 41bp 1 0.283141677759086 1 0.048156350851059 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022426 chr17:78022406 nonsynonymous SNV 0.002 1 1 hm5C_associated_SNPs_34101 0 0 1 0 1 exosome 1 0.50023164392109 1 0.999536712157821 hm5C_site_33933 DeepMRMD:1;iRNA_m5C:0.999536712157821 33934 chr6 144782340 144782340 1 + G A SKCM 144782344 + 144782324 144782364 41 AATAAACAGAACTGAAGGGCCAACCTGGACATGCATATCTG AATAAACAGAACTGAAAGGCCAACCTGGACATGCATATCTG < 41bp 1 0.047108469658287 1 0.128912806510925 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:144782344 chr6:144782340 synonymous SNV . 0 17 hm5C_associated_SNPs_34102 0 0 1 0 1 Nucleus 1 0.500231643577013 1 0.999536712845974 hm5C_site_33934 DeepMRMD:1;iRNA_m5C:0.999536712845974 33935 chr17 7318277 7318277 1 + C T SKCM 7318290 + 7318270 7318310 41 GCCAGGGCTGTTCCAGAAGGCCATCGCCCAGAGTGGCACCG GCCAGGGTTGTTCCAGAAGGCCATCGCCCAGAGTGGCACCG < 41bp 1 0.0349607656304412 1 0.206830054521561 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7318290 chr17:7318277 synonymous SNV . 0 8 hm5C_associated_SNPs_34103 0 0 1 0 1 chromatin 1 0.500231643923235 1 0.99953671215353 hm5C_site_33935 DeepMRMD:1;iRNA_m5C:0.99953671215353 33936 chrX 153608118 153608118 1 + C T SKCM 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA TCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA < 41bp 1 0.405643871829467 1 0.140454769134521 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608118 nonsynonymous SNV 0.137 1 1 hm5C_associated_SNPs_34104 0 0 1 0 2 Ribosome 1 0.500232772026617 1 0.999534455946766 hm5C_site_33936 DeepMRMD:1;iRNA_m5C:0.999534455946766 33937 chr3 47385188 47385188 1 + C T SKCM 47385197 + 47385177 47385217 41 CTCAGCATTGCCGAGATGTACAGCTCTGTGGCAGACCAGTG CTCAGCATTGCTGAGATGTACAGCTCTGTGGCAGACCAGTG < 41bp 1 0.422189095102477 1 0.0901167690753937 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47385197 chr3:47385188 synonymous SNV . 0 12 hm5C_associated_SNPs_34105 0 0 1 0 0 Cytosol 1 0.500231643952824 1 0.999536712094352 hm5C_site_33937 DeepMRMD:1;iRNA_m5C:0.999536712094352 33938 chr19 14020750 14020750 1 + C T SKCM 14020742 + 14020722 14020762 41 GGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCA GGCTTTGGTCGGGGGCCAGCCCCCAGCCTTGGAGAAGCTCA < 41bp 1 0.424890044253908 1 0.785475134849548 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020742 chr19:14020750 synonymous SNV . 0 29 hm5C_associated_SNPs_34106 0 0 1 0 1 chromatin 1 0.500231643921103 0.429049730300904 0.999536712157795 hm5C_site_33938 DeepMRMD:0.429049730300904;iRNA_m5C:0.999536712157795 33939 chr19 14020750 14020750 1 + C T SKCM 14020743 + 14020723 14020763 41 GCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAA GCTTTGGTCGGGGGCCAGCCCCCAGCCTTGGAGAAGCTCAA < 41bp 1 0.256021873361623 1 0.758546471595764 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020743 chr19:14020750 synonymous SNV . 0 28 hm5C_associated_SNPs_34107 0 0 1 0 1 chromatin 1 0.500231643921092 0.482907056808472 0.999536712157815 hm5C_site_33939 DeepMRMD:0.482907056808472;iRNA_m5C:0.999536712157815 33940 chr19 14020750 14020750 1 + C T SKCM 14020744 + 14020724 14020764 41 CTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAA CTTTGGTCGGGGGCCAGCCCCCAGCCTTGGAGAAGCTCAAA < 41bp 1 0.183239435409702 1 0.670407116413116 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020744 chr19:14020750 synonymous SNV . 0 27 hm5C_associated_SNPs_34108 0 0 1 0 1 chromatin 1 0.500231644249109 0.659185767173768 0.999536711501783 hm5C_site_33940 DeepMRMD:0.659185767173768;iRNA_m5C:0.999536711501783 33941 chr19 14020750 14020750 1 + C T SKCM 14020745 + 14020725 14020765 41 TTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAAG TTTGGTCGGGGGCCAGCCCCCAGCCTTGGAGAAGCTCAAAG < 41bp 1 0.524323730016332 1 0.788927674293518 experiment 0.951352539967335 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020745 chr19:14020750 synonymous SNV . 0 26 hm5C_associated_SNPs_34109 0 0 1 0 1 chromatin 1 0.500231643921092 0.422144651412964 0.999536712157815 hm5C_site_33941 DeepMRMD:0.422144651412964;iRNA_m5C:0.999536712157815 33942 chr5 14280513 14280513 1 + G A SKCM 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGAAGACTCATTTCCTATCTAGCCTGT < 41bp 1 0.327782187755033 1 0.182724982500076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280513 synonymous SNV . 0 17 hm5C_associated_SNPs_34111 0 0 1 0 2 Nucleus 1 0.500231643921155 1 0.999536712157689 hm5C_site_33942 DeepMRMD:1;iRNA_m5C:0.999536712157689 33943 chr21 47769615 47769615 1 + G A SKCM 47769611 + 47769591 47769631 41 TTTCTAGGGGCCCTTAGGAACCTGGAGAGTCATCATCAAGC TTTCTAGGGGCCCTTAGGAACCTGAAGAGTCATCATCAAGC < 41bp 1 0.105745035748074 1 0.131559520959854 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47769611 chr21:47769615 nonsynonymous SNV 0.017 1 25 hm5C_associated_SNPs_34112 0 0 1 0 1 Exosome 1 0.500231644271063 1 0.999536711457873 hm5C_site_33943 DeepMRMD:1;iRNA_m5C:0.999536711457873 33944 chr1 228479705 228479705 1 + G A SKCM 228479689 + 228479669 228479709 41 GTGTGAACTGAGCAAGGTGGCCCCTGTGGAGTGGAGGAAGG GTGTGAACTGAGCAAGGTGGCCCCTGTGGAGTGGAGAAAGG < 41bp 1 0.0419552078048533 1 0.145340025424957 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228479689 chr1:228479705 synonymous SNV . 0 37 hm5C_associated_SNPs_34113 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33944 DeepMRMD:1;iRNA_m5C:0.999536712157815 33945 chr2 65299865 65299865 1 + C T SKCM 65299873 + 65299853 65299893 41 TGGAGCTGCCCTCCAAGGATCTGGGGATCCTGAGGGCCAGA TGGAGCTGCCCTTCAAGGATCTGGGGATCCTGAGGGCCAGA < 41bp 1 0.685223531031672 1 0.472686529159546 experiment 0.629552937936657 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP68 ENSG00000011523 CDS Human protein_coding chr2:65299873 chr2:65299865 synonymous SNV . 0 13 hm5C_associated_SNPs_34114 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33945 DeepMRMD:1;iRNA_m5C:0.999536712157815 33946 chr9 38396492 38396492 1 + C T SKCM 38396501 + 38396481 38396521 41 GGTGCGGCCATCGCCCAGCACGTGGATGTTGACAAAGTTGC GGTGCGGCCATTGCCCAGCACGTGGATGTTGACAAAGTTGC < 41bp 1 0.4650576701072 1 0.232753932476044 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALDH1B1 ENSG00000137124 CDS Human protein_coding chr9:38396501 chr9:38396492 synonymous SNV . 0 12 hm5C_associated_SNPs_34115 0 0 0 0 0 Cytosol 1 0.500231642441614 1 0.999536715116772 hm5C_site_33946 DeepMRMD:1;iRNA_m5C:0.999536715116772 33947 chr7 142458544 142458544 1 + C T SKCM 142458524 + 142458504 142458544 41 TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATC TTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATT < 41bp 1 0.663442708932919 1 0.48211145401001 experiment 0.673114582134162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458524 chr7:142458544 nonsynonymous SNV 0.751 3 41 hm5C_associated_SNPs_34116 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33947 DeepMRMD:1;iRNA_m5C:0.999536712157815 33948 chr7 142458544 142458544 1 + C T SKCM 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATTAGC < 41bp 1 0.37337847659734 1 0.621204316616058 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458544 nonsynonymous SNV 0.751 3 38 hm5C_associated_SNPs_34117 0 0 0 0 2 Cytosol 1 0.500231643921117 0.757591366767884 0.999536712157767 hm5C_site_33948 DeepMRMD:0.757591366767884;iRNA_m5C:0.999536712157767 33949 chr7 142458544 142458544 1 + C T SKCM 142458531 + 142458511 142458551 41 GTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGC GTGGCTCCCTCATCAACGAACAGTGGGTGGTATTAGCAGGC < 41bp 1 0.463831963914031 1 0.305186033248901 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458531 chr7:142458544 nonsynonymous SNV 0.751 3 34 hm5C_associated_SNPs_34118 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_33949 DeepMRMD:1;iRNA_m5C:0.999536712157814 33950 chr7 142458544 142458544 1 + C T SKCM 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGTGGGTGGTATTAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.664767623647621 1 0.809011936187744 experiment 0.670464752704758 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458544 nonsynonymous SNV 0.751 3 18 hm5C_associated_SNPs_34119 0 0 0 0 2 Cytosol 1 0.500231643807749 0.381976127624512 0.999536712384502 hm5C_site_33950 DeepMRMD:0.381976127624512;iRNA_m5C:0.999536712384502 33951 chr7 142458544 142458544 1 + C T SKCM 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGTGGGTGGTATTAGCAGGCCACTGCTACAAGTCGTAAGT < 41bp 1 0.188825764063738 1 0.34391862154007 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458544 nonsynonymous SNV 0.751 3 14 hm5C_associated_SNPs_34120 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33951 DeepMRMD:1;iRNA_m5C:0.999536712157815 33952 chr7 142458544 142458544 1 + C T SKCM 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGTGGGTGGTATTAGCAGGCCACTGCTACAAGTCGTAAGTG < 41bp 1 0.446376506809813 1 0.239253848791122 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458544 nonsynonymous SNV 0.751 3 13 hm5C_associated_SNPs_34121 0 0 0 0 2 Cytosol 1 0.500231644166047 1 0.999536711667905 hm5C_site_33952 DeepMRMD:1;iRNA_m5C:0.999536711667905 33953 chr7 142458544 142458544 1 + C T SKCM 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG TGGGTGGTATTAGCAGGCCACTGCTACAAGTCGTAAGTGTG < 41bp 1 0.275441267389731 1 0.11964425444603 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458544 nonsynonymous SNV 0.751 3 11 hm5C_associated_SNPs_34122 0 0 0 0 2 Cytosol 1 0.500231136591452 1 0.999537726817096 hm5C_site_33953 DeepMRMD:1;iRNA_m5C:0.999537726817096 33954 chr7 142458544 142458544 1 + C T SKCM 142458557 + 142458537 142458577 41 GTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGG GTGGTATTAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGG < 41bp 1 0.57699241249065 1 0.842001020908356 experiment 0.846015175018699 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458557 chr7:142458544 nonsynonymous SNV 0.751 3 8 hm5C_associated_SNPs_34123 0 0 0 0 2 Cytosol 1 0.500231643921092 0.315997958183288 0.999536712157815 hm5C_site_33954 DeepMRMD:0.315997958183288;iRNA_m5C:0.999536712157815 33955 chr7 142458544 142458544 1 + C T SKCM 142458560 + 142458540 142458580 41 GTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCC GTATTAGCAGGCCACTGCTACAAGTCGTAAGTGTGGGGCCC < 41bp 1 0.538978926923023 1 0.801587104797363 experiment 0.922042146153955 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458560 chr7:142458544 nonsynonymous SNV 0.751 3 5 hm5C_associated_SNPs_34124 0 0 0 0 2 Cytosol 1 0.500231645686687 0.396825790405274 0.999536708626626 hm5C_site_33955 DeepMRMD:0.396825790405274;iRNA_m5C:0.999536708626626 33956 chr16 24580568 24580568 1 + C T SKCM 24580557 + 24580537 24580577 41 TAAAGGTTATGCTGCTGGAGCACAGCCTAGACCCTCAGCAA TAAAGGTTATGCTGCTGGAGCACAGCCTAGATCCTCAGCAA < 41bp 1 0.302077854598751 1 0.359431266784668 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBBP6 ENSG00000122257 CDS Human protein_coding chr16:24580557 chr16:24580568 nonsynonymous SNV 0.999 2 32 hm5C_associated_SNPs_34126 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_33956 DeepMRMD:1;iRNA_m5C:0.999536712157815 33957 chr16 12662421 12662421 1 + C T SKCM 12662431 + 12662411 12662451 41 TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA TTCCCGCTTCTCCAAACTGTCCCGGGGTCAGCCCCGGGAGA < 41bp 1 0.341155910406276 1 0.752170085906982 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662431 chr16:12662421 nonsynonymous SNV 0.995 2 11 hm5C_associated_SNPs_34127 0 0 0 0 1 Nucleus 1 0.500231643886753 0.495659828186036 0.999536712226494 hm5C_site_33957 DeepMRMD:0.495659828186036;iRNA_m5C:0.999536712226494 33958 chr16 12662421 12662421 1 + C T SKCM 12662432 + 12662412 12662452 41 TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC TCCCGCTTCTCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC < 41bp 1 0.36153458663308 1 0.539273977279663 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662432 chr16:12662421 nonsynonymous SNV 0.995 2 10 hm5C_associated_SNPs_34128 0 0 0 0 1 Nucleus 1 0.500231643921092 0.921452045440674 0.999536712157815 hm5C_site_33958 DeepMRMD:0.921452045440674;iRNA_m5C:0.999536712157815 33959 chr16 12662421 12662421 1 + C T SKCM 12662433 + 12662413 12662453 41 CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC CCCGCTTCTCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC < 41bp 1 0.453113804510623 1 0.886700391769409 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662433 chr16:12662421 nonsynonymous SNV 0.995 2 9 hm5C_associated_SNPs_34129 0 0 0 0 1 Nucleus 1 0.500231644315144 0.226599216461182 0.999536711369712 hm5C_site_33959 DeepMRMD:0.226599216461182;iRNA_m5C:0.999536711369712 33960 chr3 47385187 47385187 1 + C T SKCM 47385197 + 47385177 47385217 41 CTCAGCATTGCCGAGATGTACAGCTCTGTGGCAGACCAGTG CTCAGCATTGTCGAGATGTACAGCTCTGTGGCAGACCAGTG < 41bp 1 0.474005605435566 1 0.129011988639832 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47385197 chr3:47385187 nonsynonymous SNV 0.839 1 11 hm5C_associated_SNPs_34130 0 0 1 0 0 Cytosol 1 0.500231643920961 1 0.999536712158077 hm5C_site_33960 DeepMRMD:1;iRNA_m5C:0.999536712158077 33961 chr20 4679899 4679899 1 + C T SKCM 4679908 + 4679888 4679928 41 ATGCTGGTTCTCTTTGTGGCCACATGGAGTGACCTGGGCCT ATGCTGGTTCTTTTTGTGGCCACATGGAGTGACCTGGGCCT < 41bp 1 0.5606560230855 1 0.674317479133606 experiment 0.878687953829 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRNP ENSG00000171867 CDS Human protein_coding chr20:4679908 chr20:4679899 synonymous SNV . 0 12 hm5C_associated_SNPs_34131 0 0 1 0 1 Ribosome 1 0.500235591445037 0.651365041732788 0.999528817109926 hm5C_site_33961 DeepMRMD:0.651365041732788;iRNA_m5C:0.999528817109926 33962 chr2 29344298 29344298 1 + C T SKCM 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCTTTTG < 41bp 1 0.0653890283109053 1 0.0650585293769836 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344298 nonsynonymous SNV 0.642 1 37 hm5C_associated_SNPs_34132 0 0 1 1 1 nucleus 1 0.500231643990864 1 0.999536712018273 hm5C_site_33962 DeepMRMD:1;iRNA_m5C:0.999536712018273 33963 chr16 4727524 4727524 1 + T A SKCM 4727512 + 4727492 4727532 41 GGTGCGGAAGAAGCCAGGAGCCCTGTCCCCCGTGTCCTTCA GGTGCGGAAGAAGCCAGGAGCCCTGTCCCCCGAGTCCTTCA < 41bp 1 0.145627049015766 1 0.0706493258476257 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4727512 chr16:4727524 nonsynonymous SNV 0.976 2 33 hm5C_associated_SNPs_34133 0 0 1 0 2 Cytosol 1 0.500231643907996 1 0.999536712184007 hm5C_site_33963 DeepMRMD:1;iRNA_m5C:0.999536712184007 33964 chr16 68373357 68373357 1 + C T SKCM 68373342 + 68373322 68373362 41 TGCAGACCAGCCTCGGAGAGCAGGTCATCGTCCCTCCCGTT TGCAGACCAGCCTCGGAGAGCAGGTCATCGTCCCTTCCGTT < 41bp 1 0.552075252995821 1 0.498669892549515 experiment 0.895849494008358 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68373342 chr16:68373357 nonsynonymous SNV 0.114 3 36 hm5C_associated_SNPs_34134 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33964 DeepMRMD:1;iRNA_m5C:0.999536712157815 33965 chr2 54872391 54872391 1 + G A SKCM 54872378 + 54872358 54872398 41 GCCCTCAGATGCTGGAGAATCAGATGGAAGTGCGGAAGAAG GCCCTCAGATGCTGGAGAATCAGATGGAAGTGCAGAAGAAG < 41bp 1 0.349727074421277 1 0.802324831485748 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872378 chr2:54872391 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_34135 0 0 1 0 1 Nucleus 1 0.500231643921196 0.395350337028504 0.999536712157609 hm5C_site_33965 DeepMRMD:0.395350337028504;iRNA_m5C:0.999536712157609 33966 chr16 27374335 27374335 1 + C T SKCM 27374351 + 27374331 27374371 41 TCCTCCGCCGAAATGTCCTCCAGCATGGGGCAGCTGCAGCC TCCTTCGCCGAAATGTCCTCCAGCATGGGGCAGCTGCAGCC < 41bp 1 0.688889083597124 1 0.464204698801041 experiment 0.622221832805752 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IL4R ENSG00000077238 CDS Human protein_coding chr16:27374351 chr16:27374335 synonymous SNV . 0 5 hm5C_associated_SNPs_34136 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33966 DeepMRMD:1;iRNA_m5C:0.999536712157815 33967 chr17 7467091 7467091 1 + C T SKCM 7467100 + 7467080 7467120 41 TCCAAAGTCTCCTCTGGACCCTGACTCGGGTAAGGTGGGAA TCCAAAGTCTCTTCTGGACCCTGACTCGGGTAAGGTGGGAA < 41bp 1 0.341691220188211 1 0.0686002671718597 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SENP3 ENSG00000161956 CDS Human protein_coding chr17:7467100 chr17:7467091 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_34137 0 0 1 0 1 Cytosol 1 0.500231651505404 1 0.999536696989192 hm5C_site_33967 DeepMRMD:1;iRNA_m5C:0.999536696989192 33968 chr19 1912852 1912852 1 + C T SKCM 1912858 + 1912838 1912878 41 CTGCTCCTTCGCCCCGGCCGCTGCCCCCCAGGCCGTCCGCG CTGCTCCTTCGCCCTGGCCGCTGCCCCCCAGGCCGTCCGCG < 41bp 1 0.119799637750048 1 0.108211904764175 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAT3 ENSG00000213638 CDS Human protein_coding chr19:1912858 chr19:1912852 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_34138 0 0 1 0 0 exosome 1 0.500231643921041 1 0.999536712157918 hm5C_site_33968 DeepMRMD:1;iRNA_m5C:0.999536712157918 33969 chr11 45924119 45924119 1 + C T SKCM 45924099 + 45924079 45924119 41 CCCCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCGAATC CCCCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCGAATT < 41bp 1 0.113853507292147 1 0.161592870950699 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924099 chr11:45924119 synonymous SNV . 0 41 hm5C_associated_SNPs_34139 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_33969 DeepMRMD:1;iRNA_m5C:0.999536712157815 33970 chr1 57157079 57157079 1 + C T SKCM 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTGATTAGCACTCCAACAGATTTTTTTAT < 41bp 1 0.0718620148204232 1 0.303920388221741 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157079 synonymous SNV . 0 18 hm5C_associated_SNPs_34140 0 0 1 0 2 Endoplasmic reticulum 1 0.500231015818768 1 0.999537968362463 hm5C_site_33970 DeepMRMD:1;iRNA_m5C:0.999537968362463 33971 chr11 209918 209918 1 + C T SKCM 209927 + 209907 209947 41 GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCC GCTCCTTCCTTTCCAAGAGACTGAGCGGGCCATGGAGATCC < 41bp 1 0.538299920176178 1 0.0648793280124664 experiment 0.923400159647644 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209927 chr11:209918 nonsynonymous SNV 0.743 1 12 hm5C_associated_SNPs_34141 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_33971 DeepMRMD:1;iRNA_m5C:0.999536712157815 33972 chr13 115091187 115091187 1 + C T SKCM 115091186 + 115091166 115091206 41 AAGAAGCTCAAGAAAGACAACCAAGAGAGCTCAGACGCTGA AAGAAGCTCAAGAAAGACAACTAAGAGAGCTCAGACGCTGA < 41bp 1 0.304762980836016 1 0.202601134777069 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115091186 chr13:115091187 stopgain 0.997 0 22 hm5C_associated_SNPs_34142 0 0 0 0 0 nucleus 1 0.500231645639641 1 0.999536708720718 hm5C_site_33972 DeepMRMD:1;iRNA_m5C:0.999536708720718 33973 chr17 53852193 53852193 1 + G T SKCM 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCGGGTGGCCAAATTCCTTCCTGGCTCATT < 41bp 1 0.291017633032734 1 0.187031686306 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852193 synonymous SNV . 0 29 hm5C_associated_SNPs_34143 0 0 1 1 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33973 DeepMRMD:1;iRNA_m5C:0.999536712157815 33974 chr7 141341105 141341105 1 + C A SKCM 141341103 + 141341083 141341123 41 CACGGGACCTACAGAGAGACCTCCCAATGAACCAGAGGAGA CACGGGACCTACAGAGAGACCTACCAATGAACCAGAGGAGA < 41bp 1 0.231623335894974 1 0.0470375120639801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141341103 chr7:141341105 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_34144 0 0 1 0 2 Cytosol 1 0.50023166155638 1 0.999536676887239 hm5C_site_33974 DeepMRMD:1;iRNA_m5C:0.999536676887239 33975 chr20 32217709 32217709 1 + C T SKCM 32217689 + 32217669 32217709 41 GAGTTGGTCTCCAGGCAGCACAGCCCTGGGAGTGCAGATTC GAGTTGGTCTCCAGGCAGCACAGCCCTGGGAGTGCAGATTT < 41bp 1 0.351875689352202 1 0.0469240248203278 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBFA2T2 ENSG00000078699 CDS Human protein_coding chr20:32217689 chr20:32217709 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_34145 0 0 1 0 1 Nucleus 1 0.500231643635992 1 0.999536712728016 hm5C_site_33975 DeepMRMD:1;iRNA_m5C:0.999536712728016 33976 chr9 134354730 134354730 1 + C T SKCM 134354717 + 134354697 134354737 41 AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCT AGAACAACTTATGTCTGGAGCAAGGTGACGTGATCGTGCCT < 41bp 1 0.319156567293777 1 0.769617795944214 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354717 chr9:134354730 nonsynonymous SNV 0.161 1 34 hm5C_associated_SNPs_34146 0 0 1 0 1 Nucleus 1 0.500231643913214 0.460764408111572 0.999536712173573 hm5C_site_33976 DeepMRMD:0.460764408111572;iRNA_m5C:0.999536712173573 33977 chr9 134354730 134354730 1 + C T SKCM 134354743 + 134354723 134354763 41 GACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG GACGTGATCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG < 41bp 1 0.31059577443875 1 0.607393383979797 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354743 chr9:134354730 nonsynonymous SNV 0.161 1 8 hm5C_associated_SNPs_34147 0 0 1 0 1 Nucleus 1 0.500231643921113 0.785213232040406 0.999536712157774 hm5C_site_33977 DeepMRMD:0.785213232040406;iRNA_m5C:0.999536712157774 33978 chr1 23236991 23236991 1 + C T SKCM 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTT < 41bp 1 0.455247426384286 1 0.370047986507416 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236991 synonymous SNV . 0 41 hm5C_associated_SNPs_34148 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392049 1 0.99953671215902 hm5C_site_33978 DeepMRMD:1;iRNA_m5C:0.99953671215902 33979 chr12 57600328 57600328 1 + C T SKCM 57600323 + 57600303 57600343 41 AGCCTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC AGCCTGTTCCCCGGCCACCCCCATTTGGCTTACGAGCAGGC < 41bp 1 0.0205683379986143 1 0.205042541027069 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600323 chr12:57600328 nonsynonymous SNV 0.917 2 26 hm5C_associated_SNPs_34149 0 0 0 0 1 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_33979 DeepMRMD:1;iRNA_m5C:0.999536712157815 33980 chr11 61404442 61404442 1 + G A SKCM 61404434 + 61404414 61404454 41 TTGTGTTCACCAAGGAGGACCTCACTGAGATCAGGGACCTG TTGTGTTCACCAAGGAGGACCTCACTGAAATCAGGGACCTG < 41bp 1 0.135789536232018 1 0.0632124841213226 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404434 chr11:61404442 . . 0 29 hm5C_associated_SNPs_34150 0 0 0 0 0 unknown 1 0.500232899568461 1 0.999534200863077 hm5C_site_33980 DeepMRMD:1;iRNA_m5C:0.999534200863077 33981 chr11 61404442 61404442 1 + G A SKCM 61404452 + 61404432 61404472 41 ACCTCACTGAGATCAGGGACCTGCTGCTGGCCAATAAGGTG ACCTCACTGAAATCAGGGACCTGCTGCTGGCCAATAAGGTG < 41bp 1 0.385038994661687 1 0.324690133333206 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404452 chr11:61404442 . . 0 11 hm5C_associated_SNPs_34151 0 0 0 0 0 unknown 1 0.500231643924384 1 0.999536712151232 hm5C_site_33981 DeepMRMD:1;iRNA_m5C:0.999536712151232 33982 chr10 64148314 64148314 1 + C T SKCM 64148330 + 64148310 64148350 41 TTGTCCGTGATCTCAGCGGGCACGTGGTGAGTCACCCCGGG TTGTTCGTGATCTCAGCGGGCACGTGGTGAGTCACCCCGGG < 41bp 1 0.625673210822347 1 0.557312071323395 experiment 0.748653578355306 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF365 ENSG00000138311 CDS Human protein_coding chr10:64148330 chr10:64148314 synonymous SNV . 0 5 hm5C_associated_SNPs_34152 0 0 0 0 1 exosome 1 0.500231643663834 0.88537585735321 0.999536712672332 hm5C_site_33982 DeepMRMD:0.88537585735321;iRNA_m5C:0.999536712672332 33983 chr1 78001592 78001592 1 + C T SKCM 78001588 + 78001568 78001608 41 TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCG TCGGCAGACACCATGACCAACCGCTTTCTCCAAAGGAGCCG < 41bp 1 0.20933596291842 1 0.0548475086688995 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001588 chr1:78001592 nonsynonymous SNV 0.969 3 25 hm5C_associated_SNPs_34154 0 0 0 0 1 Nucleus 1 0.500231643921071 1 0.999536712157858 hm5C_site_33983 DeepMRMD:1;iRNA_m5C:0.999536712157858 33984 chr1 78001592 78001592 1 + C T SKCM 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC TTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC < 41bp 1 0.416642092420419 1 0.367867410182953 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001592 nonsynonymous SNV 0.969 3 1 hm5C_associated_SNPs_34155 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33984 DeepMRMD:1;iRNA_m5C:0.999536712157815 33985 chr19 17836861 17836861 1 + C T SKCM 17836880 + 17836860 17836900 41 CCCTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCT CTCTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCT < 41bp 1 0.503909466463289 1 0.73726761341095 experiment 0.992181067073421 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836880 chr19:17836861 nonsynonymous SNV 0.132 3 2 hm5C_associated_SNPs_34156 0 0 1 0 0 Cytosol 1 0.500231643921092 0.5254647731781 0.999536712157815 hm5C_site_33985 DeepMRMD:0.5254647731781;iRNA_m5C:0.999536712157815 33986 chr11 8016890 8016890 1 + G A SKCM 8016893 + 8016873 8016913 41 GTTCCCGATGACTTTGAGACCATGCTCAACAGCAACATCAA GTTCCCGATGACTTTGAAACCATGCTCAACAGCAACATCAA < 41bp 1 0.25846454027755 1 0.335493803024292 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3F ENSG00000175390 CDS Human protein_coding chr11:8016893 chr11:8016890 synonymous SNV . 0 18 hm5C_associated_SNPs_34157 0 0 1 0 2 Nucleus 1 0.50023174315648 1 0.999536513687039 hm5C_site_33986 DeepMRMD:1;iRNA_m5C:0.999536513687039 33987 chr18 74631830 74631830 1 + T C SKCM 74631822 + 74631802 74631842 41 CACTTTCACGGAGGAGGAGACAGCCCAGTTAGCCAAGATCC CACTTTCACGGAGGAGGAGACAGCCCAGCTAGCCAAGATCC < 41bp 1 0.354919924417819 1 0.27128392457962 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74631822 chr18:74631830 synonymous SNV . 0 29 hm5C_associated_SNPs_34159 0 0 1 0 1 Cytosol 1 0.500231644146831 1 0.999536711706338 hm5C_site_33987 DeepMRMD:1;iRNA_m5C:0.999536711706338 33988 chr10 72324241 72324241 1 + C T SKCM 72324236 + 72324216 72324256 41 TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT TACCTCCACCTGGAGAAGGCCGACTTCTGGCAGAGGCCCTT < 41bp 1 0.224445574180203 1 0.321542948484421 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72324236 chr10:72324241 nonsynonymous SNV 0.920 2 26 hm5C_associated_SNPs_34160 0 0 1 0 1 Ribosome 1 0.500231643921568 1 0.999536712156864 hm5C_site_33988 DeepMRMD:1;iRNA_m5C:0.999536712156864 33989 chr14 96998708 96998708 1 + C G SKCM 96998728 + 96998708 96998748 41 CATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT GATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT < 41bp 1 0.550250922616556 1 0.0676973164081573 experiment 0.899498154766888 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96998728 chr14:96998708 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_34161 0 0 1 0 2 Ribosome 1 0.500231641666193 1 0.999536716667615 hm5C_site_33989 DeepMRMD:1;iRNA_m5C:0.999536716667615 33990 chr1 155279920 155279920 1 + C T SKCM 155279915 + 155279895 155279935 41 AAGCAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGT AAGCAGGATTTCGTTCAGCACTTCTTCCAGATCGTTAGGGT < 41bp 1 0.187800439062329 1 0.052276611328125 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155279915 chr1:155279920 nonsynonymous SNV 0.990 1 26 hm5C_associated_SNPs_34162 0 0 1 0 3 Cytosol 1 0.500070320841104 1 0.999859358317792 hm5C_site_33990 DeepMRMD:1;iRNA_m5C:0.999859358317792 33991 chr6 7583110 7583110 1 + C T SKCM 7583125 + 7583105 7583145 41 ATATTCCCGCAAGGAGGAGGCTATTAGGAAGATAGAATCGG ATATTTCCGCAAGGAGGAGGCTATTAGGAAGATAGAATCGG < 41bp 1 0.072314323513885 1 0.0851112902164459 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7583125 chr6:7583110 nonsynonymous SNV 0.997 3 6 hm5C_associated_SNPs_34163 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_33991 DeepMRMD:1;iRNA_m5C:0.999536712157815 33992 chr21 46931086 46931086 1 + C T SKCM 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCTCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC < 41bp 1 0.0637310530629721 1 0.168604522943497 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931086 nonsynonymous SNV 0.025 0 3 hm5C_associated_SNPs_34164 0 0 1 0 2 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_33992 DeepMRMD:1;iRNA_m5C:0.999536712157818 33993 chr21 46931086 46931086 1 + C T SKCM 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CTCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT < 41bp 1 0.0712427988009956 1 0.0420300662517548 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931086 nonsynonymous SNV 0.025 0 2 hm5C_associated_SNPs_34165 0 0 1 0 2 Nucleus 1 0.500231643920866 1 0.999536712158268 hm5C_site_33993 DeepMRMD:1;iRNA_m5C:0.999536712158268 33994 chr22 29695307 29695307 1 + C T SKCM 29695312 + 29695292 29695332 41 GCTTCCTCCCGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG GCTTCCTCCCGCCACTCTTTCCGCCCCCGGGTAGGTGCAGG < 41bp 1 0.25101854107919 1 0.403990179300308 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695312 chr22:29695307 nonsynonymous SNV 0.989 2 16 hm5C_associated_SNPs_34166 0 0 1 0 2 Cytosol 1 0.500231643921084 1 0.999536712157833 hm5C_site_33994 DeepMRMD:1;iRNA_m5C:0.999536712157833 33995 chr22 29695308 29695308 1 + C T SKCM 29695312 + 29695292 29695332 41 GCTTCCTCCCGCCACCCTTTCCGCCCCCGGGTAGGTGCAGG GCTTCCTCCCGCCACCTTTTCCGCCCCCGGGTAGGTGCAGG < 41bp 1 0.276835239177195 1 0.514437675476074 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695312 chr22:29695308 synonymous SNV . 0 17 hm5C_associated_SNPs_34167 0 0 1 0 2 Cytosol 1 0.500231643921092 0.971124649047852 0.999536712157815 hm5C_site_33995 DeepMRMD:0.971124649047852;iRNA_m5C:0.999536712157815 33996 chr17 1637437 1637437 1 + C T SKCM 1637447 + 1637427 1637467 41 GCGTCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG GCGTCTTCTTTGTGGGCCAGCTTGAGGCCCCGCAGCACGTG < 41bp 1 0.556314997600412 1 0.223007082939148 experiment 0.887370004799176 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1637447 chr17:1637437 synonymous SNV . 0 11 hm5C_associated_SNPs_34168 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921096 1 0.999536712157808 hm5C_site_33996 DeepMRMD:1;iRNA_m5C:0.999536712157808 33997 chr14 102449438 102449438 1 + G A SKCM 102449442 + 102449422 102449462 41 ATTTGCTGTCTGCCACGGAGCTGGACAAAATAAGACAGGCG ATTTGCTGTCTGCCACAGAGCTGGACAAAATAAGACAGGCG < 41bp 1 0.338729696072348 1 0.518049657344818 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102449442 chr14:102449438 synonymous SNV . 0 17 hm5C_associated_SNPs_34169 0 0 1 0 1 Cytosol 1 0.500231643912468 0.963900685310364 0.999536712175065 hm5C_site_33997 DeepMRMD:0.963900685310364;iRNA_m5C:0.999536712175065 33998 chr1 957749 957749 1 + C T SKCM 957744 + 957724 957764 41 CTTTGTGAACCCTGCACCCCCATACCTGTGGCCAGCCCACA CTTTGTGAACCCTGCACCCCCATACTTGTGGCCAGCCCACA < 41bp 1 0.0568435915073127 1 0.180506378412247 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957744 chr1:957749 synonymous SNV . 0 26 hm5C_associated_SNPs_34170 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_33998 DeepMRMD:1;iRNA_m5C:0.999536712157814 33999 chr15 64410335 64410335 1 + C T SKCM 64410330 + 64410310 64410350 41 TTTTAGATGCCACAGTGGAGCTATCCTTGGACAGCACACAA TTTTAGATGCCACAGTGGAGCTATCTTTGGACAGCACACAA < 41bp 1 0.0802428666518766 1 0.15072625875473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410330 chr15:64410335 synonymous SNV . 0 26 hm5C_associated_SNPs_34171 0 0 1 0 1 Ribosome 1 0.500231644489097 1 0.999536711021806 hm5C_site_33999 DeepMRMD:1;iRNA_m5C:0.999536711021806 34000 chr15 64410335 64410335 1 + C T SKCM 64410334 + 64410314 64410354 41 AGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAAATA AGATGCCACAGTGGAGCTATCTTTGGACAGCACACAAAATA < 41bp 1 0.132906658636836 1 0.109082490205765 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410334 chr15:64410335 synonymous SNV . 0 22 hm5C_associated_SNPs_34172 0 0 1 0 1 Ribosome 1 0.500231534998415 1 0.999536930003171 hm5C_site_34000 DeepMRMD:1;iRNA_m5C:0.999536930003171 34001 chr19 24010066 24010066 1 + G A SKCM 24010069 + 24010049 24010089 41 ATCTTGACTTCCAGATGGAACACTACATCTATAAAAGGAAA ATCTTGACTTCCAGATGAAACACTACATCTATAAAAGGAAA < 41bp 1 0.429018667204558 1 0.439294844865799 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout RPSAP58 ENSG00000205246 CDS Human other chr19:24010069 chr19:24010066 nonsynonymous SNV 0.956 0 18 hm5C_associated_SNPs_34173 0 0 1 0 0 Cytosol 1 0.500231643921081 1 0.999536712157838 hm5C_site_34001 DeepMRMD:1;iRNA_m5C:0.999536712157838 34002 chr19 24010066 24010066 1 + G A SKCM 24010071 + 24010051 24010091 41 CTTGACTTCCAGATGGAACACTACATCTATAAAAGGAAAAG CTTGACTTCCAGATGAAACACTACATCTATAAAAGGAAAAG < 41bp 1 0.646996167125309 1 0.329265564680099 experiment 0.706007665749382 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout RPSAP58 ENSG00000205246 CDS Human other chr19:24010071 chr19:24010066 nonsynonymous SNV 0.956 0 16 hm5C_associated_SNPs_34174 0 0 1 0 0 Cytosol 1 0.500231643882162 1 0.999536712235676 hm5C_site_34002 DeepMRMD:1;iRNA_m5C:0.999536712235676 34003 chr6 131900261 131900261 1 + G A SKCM 131900277 + 131900257 131900297 41 ATGTGAAGGATTATGGGGACCTGCCCTTTGCTGACATCCCT ATGTAAAGGATTATGGGGACCTGCCCTTTGCTGACATCCCT < 41bp 1 0.357742351451543 1 0.087658017873764 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARG1 ENSG00000118520 CDS Human protein_coding chr6:131900277 chr6:131900261 synonymous SNV . 0 5 hm5C_associated_SNPs_34175 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34003 DeepMRMD:1;iRNA_m5C:0.999536712157815 34004 chr7 142458415 142458415 1 + C T SKCM 142458409 + 142458389 142458429 41 TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATG TCCCATCTCCACTCCAGTTGCTGCCCTCTTTGATGATGATG < 41bp 1 0.0783982785095982 1 0.0783375203609467 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458409 chr7:142458415 nonsynonymous SNV 0.006 3 27 hm5C_associated_SNPs_34176 0 0 0 0 1 Cytosol 1 0.500231643921176 1 0.999536712157647 hm5C_site_34004 DeepMRMD:1;iRNA_m5C:0.999536712157647 34005 chr7 142458415 142458415 1 + C T SKCM 142458412 + 142458392 142458432 41 CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACA CATCTCCACTCCAGTTGCTGCCCTCTTTGATGATGATGACA < 41bp 1 0.00807590755320398 1 0.114540219306946 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458412 chr7:142458415 nonsynonymous SNV 0.006 3 24 hm5C_associated_SNPs_34177 0 0 0 0 1 Cytosol 1 0.50023164503355 1 0.999536709932899 hm5C_site_34005 DeepMRMD:1;iRNA_m5C:0.999536709932899 34006 chr7 142458415 142458415 1 + C T SKCM 142458413 + 142458393 142458433 41 ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAA ATCTCCACTCCAGTTGCTGCCCTCTTTGATGATGATGACAA < 41bp 1 0.0188338259624159 1 0.0740949511528015 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458413 chr7:142458415 nonsynonymous SNV 0.006 3 23 hm5C_associated_SNPs_34178 0 0 0 0 1 Cytosol 1 0.500231608171375 1 0.999536783657251 hm5C_site_34006 DeepMRMD:1;iRNA_m5C:0.999536783657251 34007 chr7 142458415 142458415 1 + C T SKCM 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGCTGCCCTCTTTGATGATGATGACAAG < 41bp 1 0.0746828512336424 1 0.480388194322586 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458415 nonsynonymous SNV 0.006 3 22 hm5C_associated_SNPs_34179 0 0 0 0 1 Cytosol 1 0.500231647020819 1 0.999536705958361 hm5C_site_34007 DeepMRMD:1;iRNA_m5C:0.999536705958361 34008 chr7 142458415 142458415 1 + C T SKCM 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGCTGCCCTCTTTGATGATGATGACAAGAT < 41bp 1 0.0607068462024468 1 0.183123469352722 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458415 nonsynonymous SNV 0.006 3 20 hm5C_associated_SNPs_34180 0 0 0 0 1 Cytosol 1 0.500231643901592 1 0.999536712196817 hm5C_site_34008 DeepMRMD:1;iRNA_m5C:0.999536712196817 34009 chr7 142458415 142458415 1 + C T SKCM 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCTCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA < 41bp 1 0.68609322177926 1 0.426106035709381 experiment 0.62781355644148 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458415 nonsynonymous SNV 0.006 3 5 hm5C_associated_SNPs_34181 0 0 0 0 1 Cytosol 1 0.500231643921263 1 0.999536712157474 hm5C_site_34009 DeepMRMD:1;iRNA_m5C:0.999536712157474 34010 chr19 58757775 58757775 1 + G A SKCM 58757778 + 58757758 58757798 41 TGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGTAAG TGACACTGGAGACCTGGAAGCATATTGTCTCCCTGGGTAAG < 41bp 1 0.266051540708633 1 0.0914899706840515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58757778 chr19:58757775 nonsynonymous SNV 0.013 0 18 hm5C_associated_SNPs_34182 0 0 1 0 1 chromatin 1 0.500231643921064 1 0.999536712157871 hm5C_site_34010 DeepMRMD:1;iRNA_m5C:0.999536712157871 34011 chr6 3850756 3850756 1 + C T SKCM 3850769 + 3850749 3850789 41 TCATGTTCATCAAGGAGGACCTCATCCTGCCGCACTACCAC TCATGTTTATCAAGGAGGACCTCATCCTGCCGCACTACCAC < 41bp 1 0.313059796115487 1 0.132237434387207 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM50B ENSG00000145945 CDS Human protein_coding chr6:3850769 chr6:3850756 synonymous SNV . 0 8 hm5C_associated_SNPs_34183 0 0 0 0 0 exosome 1 0.500231643913992 1 0.999536712172016 hm5C_site_34011 DeepMRMD:1;iRNA_m5C:0.999536712172016 34012 chr12 54675959 54675959 1 + G A SKCM 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAAAGATTATTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.611532862713796 1 0.225188553333282 experiment 0.776934274572408 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675959 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_34184 0 0 0 4 1 Cytosol 1 0.500231644993918 1 0.999536710012165 hm5C_site_34012 DeepMRMD:1;iRNA_m5C:0.999536710012165 34013 chr22 30038261 30038261 1 + C T SKCM 30038248 + 30038228 30038268 41 CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGCCGTCCAG CTCCTGAGGCTTCTGTGCTCCTGGCTTCTTACGTCGTCCAG < 41bp 1 0.670564613293675 1 0.535269141197205 experiment 0.658870773412651 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NF2 ENSG00000186575 CDS Human protein_coding chr22:30038248 chr22:30038261 nonsynonymous SNV 0.468 4 34 hm5C_associated_SNPs_34185 0 0 1 0 2 Ribosome 1 0.500231643922249 0.92946171760559 0.999536712155502 hm5C_site_34013 DeepMRMD:0.92946171760559;iRNA_m5C:0.999536712155502 34014 chr17 40716061 40716061 1 + C T SKCM 40716079 + 40716059 40716099 41 TCCTTGACTTTTGATGTCATCCCCCTGCTGGACCCCTATGG TCTTTGACTTTTGATGTCATCCCCCTGCTGGACCCCTATGG < 41bp 1 0.248117056315784 1 0.158555448055267 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40716079 chr17:40716061 synonymous SNV . 0 3 hm5C_associated_SNPs_34186 0 0 1 0 1 Ribosome 1 0.500231643921098 1 0.999536712157804 hm5C_site_34014 DeepMRMD:1;iRNA_m5C:0.999536712157804 34015 chr2 74326570 74326570 1 + C T SKCM 74326589 + 74326569 74326609 41 TCCCCCGCGAGGTCCGACGCCTGCCCGAGCCTGCCAAGTCC TTCCCCGCGAGGTCCGACGCCTGCCCGAGCCTGCCAAGTCC < 41bp 1 0.288598349172342 1 0.0448487102985382 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74326589 chr2:74326570 synonymous SNV . 0 2 hm5C_associated_SNPs_34187 0 0 0 0 0 Cytosol 1 0.500231643925524 1 0.999536712148952 hm5C_site_34015 DeepMRMD:1;iRNA_m5C:0.999536712148952 34016 chr17 78022434 78022434 1 + G A SKCM 78022426 + 78022406 78022446 41 CCCACCCCAGGGAAGGAGACCTGCCAGTGTTCCAGGACCAG CCCACCCCAGGGAAGGAGACCTGCCAGTATTCCAGGACCAG < 41bp 1 0.268080173256399 1 0.0818988978862762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022426 chr17:78022434 synonymous SNV . 0 29 hm5C_associated_SNPs_34189 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34016 DeepMRMD:1;iRNA_m5C:0.999536712157815 34017 chr17 78022435 78022435 1 + T A SKCM 78022426 + 78022406 78022446 41 CCCACCCCAGGGAAGGAGACCTGCCAGTGTTCCAGGACCAG CCCACCCCAGGGAAGGAGACCTGCCAGTGATCCAGGACCAG < 41bp 1 0.317790736950279 1 0.0662164688110352 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022426 chr17:78022435 nonsynonymous SNV 0.002 0 30 hm5C_associated_SNPs_34190 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34017 DeepMRMD:1;iRNA_m5C:0.999536712157815 34018 chrX 70516849 70516849 1 + G A SKCM 70516829 + 70516809 70516849 41 GGACCGCAACATCAAGGAGGCTCGTGAGAAGCTGGAGATGG GGACCGCAACATCAAGGAGGCTCGTGAGAAGCTGGAGATGA < 41bp 1 0.553191861570592 1 0.0905556678771973 experiment 0.893616276858815 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70516829 chrX:70516849 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_34191 0 0 1 0 0 Nucleus 1 0.500231913141568 1 0.999536173716864 hm5C_site_34018 DeepMRMD:1;iRNA_m5C:0.999536173716864 34019 chrX 70516849 70516849 1 + G A SKCM 70516866 + 70516846 70516886 41 ATGGAGATGGAAGCTGCACGCCATGAGCACCAGGTCATGCT ATGAAGATGGAAGCTGCACGCCATGAGCACCAGGTCATGCT < 41bp 1 0.234411241349378 1 0.166484981775284 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516866 chrX:70516849 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_34192 0 0 1 0 0 Nucleus 1 0.499335245264045 1 1 hm5C_site_34019 DeepMRMD:1;iRNA_m5C:1 34020 chr17 7340140 7340140 1 + T G SKCM 7340160 + 7340140 7340180 41 TGATCCCTGTCCCGGGTGCTCCGCGTCTGGTGCACGCAGCT GGATCCCTGTCCCGGGTGCTCCGCGTCTGGTGCACGCAGCT < 41bp 1 0.484574635848403 1 0.518979787826538 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM102 ENSG00000181284 CDS Human protein_coding chr17:7340160 chr17:7340140 nonsynonymous SNV 0.323 1 1 hm5C_associated_SNPs_34193 0 0 0 0 0 exosome 1 0.500231643921291 0.962040424346924 0.999536712157418 hm5C_site_34020 DeepMRMD:0.962040424346924;iRNA_m5C:0.999536712157418 34021 chr21 44324160 44324160 1 + C T SKCM 44324165 + 44324145 44324185 41 CCAGCGCAAGGCGGCCCCTCCCCTGCCCAGAAAGGAAACCT CCAGCGCAAGGCGGCTCCTCCCCTGCCCAGAAAGGAAACCT < 41bp 1 0.123684656677778 1 0.222821414470673 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFV3 ENSG00000160194 CDS Human protein_coding chr21:44324165 chr21:44324160 synonymous SNV . 0 16 hm5C_associated_SNPs_34194 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34021 DeepMRMD:1;iRNA_m5C:0.999536712157815 34022 chr17 7318294 7318294 1 + C T SKCM 7318290 + 7318270 7318310 41 GCCAGGGCTGTTCCAGAAGGCCATCGCCCAGAGTGGCACCG GCCAGGGCTGTTCCAGAAGGCCATTGCCCAGAGTGGCACCG < 41bp 1 0.0451218509197455 1 0.0901640653610229 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7318290 chr17:7318294 synonymous SNV . 0 25 hm5C_associated_SNPs_34195 0 0 1 0 1 chromatin 1 0.50023159176555 1 0.999536816468899 hm5C_site_34022 DeepMRMD:1;iRNA_m5C:0.999536816468899 34023 chr7 44802542 44802542 1 + C T SKCM 44802539 + 44802519 44802559 41 GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT GTCCGCTCGGTGCTGCAGGGCCTTCTCAAAAAGCGCCTCCT < 41bp 1 0.0136210870526485 1 0.00858837366104126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802539 chr7:44802542 synonymous SNV . 0 24 hm5C_associated_SNPs_34196 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34023 DeepMRMD:1;iRNA_m5C:0.999536712157815 34024 chr21 44324161 44324161 1 + C T SKCM 44324165 + 44324145 44324185 41 CCAGCGCAAGGCGGCCCCTCCCCTGCCCAGAAAGGAAACCT CCAGCGCAAGGCGGCCTCTCCCCTGCCCAGAAAGGAAACCT < 41bp 1 0.135499382912665 1 0.320001542568207 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFV3 ENSG00000160194 CDS Human protein_coding chr21:44324165 chr21:44324161 nonsynonymous SNV 0.000 0 17 hm5C_associated_SNPs_34197 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34024 DeepMRMD:1;iRNA_m5C:0.999536712157815 34025 chr6 158922953 158922953 1 + C T SKCM 158922933 + 158922913 158922953 41 AGTGCCACCCAGTACCCAGTCTCCAACCGGTACTCCAATCC AGTGCCACCCAGTACCCAGTCTCCAACCGGTACTCCAATCT < 41bp 1 0.577119705081909 1 0.911376118659973 experiment 0.845760589836181 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TULP4 ENSG00000130338 CDS Human protein_coding chr6:158922933 chr6:158922953 nonsynonymous SNV 0.948 4 41 hm5C_associated_SNPs_34198 0 0 1 0 0 Ribosome 1 0.500231645131978 0.177247762680054 0.999536709736044 hm5C_site_34025 DeepMRMD:0.177247762680054;iRNA_m5C:0.999536709736044 34026 chr10 102822854 102822854 1 + G A SKCM 102822848 + 102822828 102822868 41 TCACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCAT TCACTGTGGCACACCCGGGGCCCTGCAAATCGGGTACGCAT < 41bp 1 0.0794642319481155 1 0.0735681056976318 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822848 chr10:102822854 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_34199 0 0 0 0 1 nucleus 1 0.500231643921087 1 0.999536712157826 hm5C_site_34026 DeepMRMD:1;iRNA_m5C:0.999536712157826 34027 chr10 102822854 102822854 1 + G A SKCM 102822849 + 102822829 102822869 41 CACTGTGGCACACCCGGGGCCCTGCGAATCGGGTACGCATG CACTGTGGCACACCCGGGGCCCTGCAAATCGGGTACGCATG < 41bp 1 0.0532570659841506 1 0.251025140285492 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822849 chr10:102822854 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_34200 0 0 0 0 1 nucleus 1 0.500231643786247 1 0.999536712427506 hm5C_site_34027 DeepMRMD:1;iRNA_m5C:0.999536712427506 34028 chr19 19656488 19656488 1 + C T SKCM 19656481 + 19656461 19656501 41 CACCGGTGCCCGCGGAGGACCCAGCTGCCTTCTCCATGCTG CACCGGTGCCCGCGGAGGACCCAGCTGTCTTCTCCATGCTG < 41bp 1 0.157568155185043 1 0.219900161027908 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19656481 chr19:19656488 nonsynonymous SNV 0.063 0 28 hm5C_associated_SNPs_34202 0 0 0 0 0 exosome 1 0.500231639276533 1 0.999536721446934 hm5C_site_34028 DeepMRMD:1;iRNA_m5C:0.999536721446934 34029 chrX 153628248 153628248 1 + A G SKCM 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCGT < 41bp 1 0.331668282701653 1 0.0462158024311066 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628248 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_34203 0 0 1 0 1 Cytosol 1 0.500231643683853 1 0.999536712632293 hm5C_site_34029 DeepMRMD:1;iRNA_m5C:0.999536712632293 34030 chr18 29171878 29171878 1 + C T SKCM 29171892 + 29171872 29171912 41 TCTCATCGTCTGCTCCTCCTCTGCCTTGCTGGACTGGTATT TCTCATTGTCTGCTCCTCCTCTGCCTTGCTGGACTGGTATT < 41bp 1 0.463797753876877 1 0.130227267742157 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTR ENSG00000118271 CDS Human protein_coding chr18:29171892 chr18:29171878 nonsynonymous SNV 0.364 3 7 hm5C_associated_SNPs_34205 0 0 1 0 1 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_34030 DeepMRMD:1;iRNA_m5C:0.999536712157815 34031 chr17 47119688 47119688 1 + A T SKCM 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATCGAGAATTGTTGCAGGGCCGAGCAGGATATAATGAAGA < 41bp 1 0.106343619015262 1 0.21869096159935 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119688 nonsynonymous SNV 0.999 2 31 hm5C_associated_SNPs_34206 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34031 DeepMRMD:1;iRNA_m5C:0.999536712157815 34032 chr17 47119688 47119688 1 + A T SKCM 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ATCGAGAATTGTTGCAGGGCCGAGCAGGATATAATGAAGAA < 41bp 1 0.317605005140102 1 0.250852823257446 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119688 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_34207 0 0 1 0 1 Ribosome 1 0.50023164391738 1 0.99953671216524 hm5C_site_34032 DeepMRMD:1;iRNA_m5C:0.99953671216524 34033 chr2 211502554 211502554 1 + C T SKCM 211502553 + 211502533 211502573 41 GGTTAAAGAAAAACATCCACCCTTGGGTTAAACAGGTAAAG GGTTAAAGAAAAACATCCACCTTTGGGTTAAACAGGTAAAG < 41bp 1 0.126750676675923 1 0.165977239608765 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211502553 chr2:211502554 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_34208 0 0 0 0 1 Nucleus 1 0.500231643518539 1 0.999536712962923 hm5C_site_34033 DeepMRMD:1;iRNA_m5C:0.999536712962923 34034 chr19 13051368 13051368 1 + C T SKCM 13051384 + 13051364 13051404 41 AAGCCCGAGCATATCCCTGACCCTGATGCTAAGAAGCCCGA AAGCTCGAGCATATCCCTGACCCTGATGCTAAGAAGCCCGA < 41bp 1 0.140741952586478 1 0.0468275845050812 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051384 chr19:13051368 nonsynonymous SNV 0.861 2 5 hm5C_associated_SNPs_34211 0 0 1 0 1 Ribosome 1 0.500231643920235 1 0.999536712159531 hm5C_site_34034 DeepMRMD:1;iRNA_m5C:0.999536712159531 34035 chr1 11779737 11779737 1 + C T SKCM 11779741 + 11779721 11779761 41 AACGGCGACCAGGGATCCTTCATCAACGTCTAGCGGCCCCG AACGGCGACCAGGGATTCTTCATCAACGTCTAGCGGCCCCG < 41bp 1 0.68331546258235 1 0.179371446371078 experiment 0.6333690748353 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11779741 chr1:11779737 nonsynonymous SNV 0.997 4 17 hm5C_associated_SNPs_34212 0 0 0 0 1 exosome 1 0.50023164561795 1 0.9995367087641 hm5C_site_34035 DeepMRMD:1;iRNA_m5C:0.9995367087641 34036 chr19 18285951 18285951 1 + C T SKCM 18285943 + 18285923 18285963 41 AAGCACTGTGCGGTGGCTGCCGAGCCTTCCTGATCCGGGAG AAGCACTGTGCGGTGGCTGCCGAGCCTTTCTGATCCGGGAG < 41bp 1 0.506377357637593 1 0.888911962509155 experiment 0.987245284724813 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFI30 ENSG00000216490 CDS Human protein_coding chr19:18285943 chr19:18285951 synonymous SNV . 0 29 hm5C_associated_SNPs_34213 0 0 1 0 1 Endoplasmic reticulum 1 0.500231652161196 0.22217607498169 0.999536695677608 hm5C_site_34036 DeepMRMD:0.22217607498169;iRNA_m5C:0.999536695677608 34037 chr22 23615312 23615312 1 + G C SKCM 23615317 + 23615297 23615337 41 ACGAGGAGCACGCTGGTCCTCCATGTAAGTCACAGCGCCCC ACGAGGAGCACGCTGCTCCTCCATGTAAGTCACAGCGCCCC < 41bp 1 0.161550380908417 1 0.0787937641143799 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23615317 chr22:23615312 nonsynonymous SNV 0.866 3 16 hm5C_associated_SNPs_34214 0 0 1 0 2 Ribosome 1 0.50023164383871 1 0.99953671232258 hm5C_site_34037 DeepMRMD:1;iRNA_m5C:0.99953671232258 34038 chr20 44522638 44522638 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTTTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.156863241222108 1 0.933194637298584 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522638 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_34215 0 0 1 3 2 Ribosome 1 0.500231689342861 0.133610725402832 0.999536621314277 hm5C_site_34038 DeepMRMD:0.133610725402832;iRNA_m5C:0.999536621314277 34039 chr3 33183917 33183917 1 + T C SKCM 33183934 + 33183914 33183954 41 CTCTTGGAACTGGAGGAGACCAGCTAGCCCACAGCAACCAA CTCCTGGAACTGGAGGAGACCAGCTAGCCCACAGCAACCAA < 41bp 1 0.42263024449498 1 0.222663760185242 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTAP ENSG00000170275 CDS Human protein_coding chr3:33183934 chr3:33183917 synonymous SNV . 0 4 hm5C_associated_SNPs_34216 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164392041 1 0.99953671215918 hm5C_site_34039 DeepMRMD:1;iRNA_m5C:0.99953671215918 34040 chr2 167108299 167108299 1 + C T SKCM 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATAAGCCAG < 41bp 1 0.378058099809279 1 0.515492916107178 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108299 nonsynonymous SNV 0.984 2 35 hm5C_associated_SNPs_34217 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 0.969014167785644 0.999536712157815 hm5C_site_34040 DeepMRMD:0.969014167785644;iRNA_m5C:0.999536712157815 34041 chr17 28754470 28754470 1 + C T SKCM 28754477 + 28754457 28754497 41 TGAACCGAAATTTCCCAGACCAGTTTGTTCAGATCACAGAT TGAACCGAAATTTTCCAGACCAGTTTGTTCAGATCACAGAT < 41bp 1 0.103070606498483 1 0.0776218175888062 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28754477 chr17:28754470 synonymous SNV . 0 14 hm5C_associated_SNPs_34218 0 0 0 0 1 Nucleus 1 0.500231643910033 1 0.999536712179934 hm5C_site_34041 DeepMRMD:1;iRNA_m5C:0.999536712179934 34042 chr2 71795334 71795334 1 + G A SKCM 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGAAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC < 41bp 1 0.109106537222355 1 0.0713644027709961 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795334 synonymous SNV . 0 3 hm5C_associated_SNPs_34219 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34042 DeepMRMD:1;iRNA_m5C:0.999536712157815 34043 chr17 64685121 64685121 1 + G A SKCM 64685113 + 64685093 64685133 41 AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG AGGTGAGTACTACAACGTACCCATTCCGAAAGGGGACGAGG < 41bp 1 0.0192427115009574 1 0.0210367143154144 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64685113 chr17:64685121 nonsynonymous SNV 0.852 1 29 hm5C_associated_SNPs_34220 0 0 1 0 2 Ribosome 1 0.500231643890483 1 0.999536712219034 hm5C_site_34043 DeepMRMD:1;iRNA_m5C:0.999536712219034 34044 chr20 44522642 44522642 1 + C T SKCM 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTTGGTCTTCTCTTCAGACCCACTGCTGCTCTCAA < 41bp 1 0.184396073043789 1 0.918181657791138 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522642 synonymous SNV . 0 20 hm5C_associated_SNPs_34222 0 0 1 7 2 Ribosome 1 0.500231643354488 0.163636684417724 0.999536713291025 hm5C_site_34044 DeepMRMD:0.163636684417724;iRNA_m5C:0.999536713291025 34045 chr19 3527703 3527703 1 + C T SKCM 3527693 + 3527673 3527713 41 CCAAGATCCCCTTCAAGGTGCTGGACGCGCCCGAGCTGCAG CCAAGATCCCCTTCAAGGTGCTGGACGCGCTCGAGCTGCAG < 41bp 1 0.680150242514262 1 0.240256696939468 experiment 0.639699514971475 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527693 chr19:3527703 nonsynonymous SNV 0.171 3 31 hm5C_associated_SNPs_34224 0 0 0 0 1 Ribosome 1 0.500231643920821 1 0.999536712158357 hm5C_site_34045 DeepMRMD:1;iRNA_m5C:0.999536712158357 34046 chr9 120476546 120476546 1 + C T SKCM 120476528 + 120476508 120476548 41 CTCCATTTCAGCTCTGCCTTCACTACAGAGACTTTATTCCC CTCCATTTCAGCTCTGCCTTCACTACAGAGACTTTATTTCC < 41bp 1 0.39530943305544 1 0.126609027385712 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TLR4 ENSG00000136869 CDS Human protein_coding chr9:120476528 chr9:120476546 nonsynonymous SNV 0.998 4 39 hm5C_associated_SNPs_34225 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34046 DeepMRMD:1;iRNA_m5C:0.999536712157815 34047 chrX 107814676 107814676 1 + C T SKCM 107814691 + 107814671 107814711 41 GTTTTCCTGGTTTACAGGGTCCTCCAGTAAGTTATAAAATT GTTTTTCTGGTTTACAGGGTCCTCCAGTAAGTTATAAAATT < 41bp 1 0.00975368015236911 1 0.0659113526344299 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107814691 chrX:107814676 nonsynonymous SNV 0.996 2 6 hm5C_associated_SNPs_34228 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34047 DeepMRMD:1;iRNA_m5C:0.999536712157815 34048 chr11 65268186 65268186 1 + C T SKCM 65268168 + 65268148 65268188 41 ACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGGATCCTA ACACGGAGGAGGCGAGCAGGCGTTGTGCGTAGAGGATCTTA < 41bp 1 0.635399584466453 1 0.314304888248444 experiment 0.729200831067093 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268168 chr11:65268186 . . 0 39 hm5C_associated_SNPs_34229 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157813 hm5C_site_34048 DeepMRMD:1;iRNA_m5C:0.999536712157813 34049 chr11 65268186 65268186 1 + C T SKCM 65268175 + 65268155 65268195 41 GGAGGCGAGCAGGCGTTGTGCGTAGAGGATCCTAGACCAGC GGAGGCGAGCAGGCGTTGTGCGTAGAGGATCTTAGACCAGC < 41bp 1 0.593062138543766 1 0.360564231872559 experiment 0.813875722912467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268175 chr11:65268186 . . 0 32 hm5C_associated_SNPs_34230 0 0 1 0 0 unknown 1 0.500231643858018 1 0.999536712283965 hm5C_site_34049 DeepMRMD:1;iRNA_m5C:0.999536712283965 34050 chr11 65268186 65268186 1 + C T SKCM 65268185 + 65268165 65268205 41 AGGCGTTGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGT AGGCGTTGTGCGTAGAGGATCTTAGACCAGCATGCCAGTGT < 41bp 1 0.419326216715088 1 0.103053241968155 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268185 chr11:65268186 . . 0 22 hm5C_associated_SNPs_34231 0 0 1 0 0 unknown 1 0.500231644161866 1 0.999536711676268 hm5C_site_34050 DeepMRMD:1;iRNA_m5C:0.999536711676268 34051 chr11 65268186 65268186 1 + C T SKCM 65268191 + 65268171 65268211 41 TGTGCGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAG TGTGCGTAGAGGATCTTAGACCAGCATGCCAGTGTGCCAAG < 41bp 1 0.535885660391869 1 0.0990165770053864 experiment 0.928228679216262 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268191 chr11:65268186 . . 0 16 hm5C_associated_SNPs_34232 0 0 1 0 0 unknown 1 0.500231639824698 1 0.999536720350604 hm5C_site_34051 DeepMRMD:1;iRNA_m5C:0.999536720350604 34052 chr11 65268186 65268186 1 + C T SKCM 65268195 + 65268175 65268215 41 CGTAGAGGATCCTAGACCAGCATGCCAGTGTGCCAAGGCCA CGTAGAGGATCTTAGACCAGCATGCCAGTGTGCCAAGGCCA < 41bp 1 0.341304041368065 1 0.0581484436988831 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268195 chr11:65268186 . . 0 12 hm5C_associated_SNPs_34233 0 0 1 0 0 unknown 1 0.500231643920856 1 0.999536712158288 hm5C_site_34052 DeepMRMD:1;iRNA_m5C:0.999536712158288 34053 chr1 44056841 44056841 1 + C T SKCM 44056839 + 44056819 44056859 41 ATTGGCGGCCTCAGCCCTTTCTCGGAATATGCCTTCCGCGT ATTGGCGGCCTCAGCCCTTTCTTGGAATATGCCTTCCGCGT < 41bp 1 0.588756562085396 1 0.522888660430908 experiment 0.822486875829209 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44056839 chr1:44056841 nonsynonymous SNV 0.946 3 23 hm5C_associated_SNPs_34234 0 0 1 0 0 Ribosome 1 0.500231643921092 0.954222679138184 0.999536712157815 hm5C_site_34053 DeepMRMD:0.954222679138184;iRNA_m5C:0.999536712157815 34054 chr18 56402458 56402458 1 + A T SKCM 56402451 + 56402431 56402471 41 AAGGTGTCAAGGAGCAGAAGCTTTTGAAATCCAGCATTCTG AAGGTGTCAAGGAGCAGAAGCTTTTGATATCCAGCATTCTG < 41bp 1 0.037439715433586 1 0.0279566943645477 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MALT1 ENSG00000172175 CDS Human protein_coding chr18:56402451 chr18:56402458 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_34235 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_34054 DeepMRMD:1;iRNA_m5C:0.999536712157814 34055 chr4 79420928 79420928 1 + C T SKCM 79420912 + 79420892 79420932 41 GAAGAAGCTGCATACCAAGTCCGGGAACCCGCAGGCCCAGA GAAGAAGCTGCATACCAAGTCCGGGAACCCGCAGGCTCAGA < 41bp 1 0.179110323057477 1 0.59613174200058 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79420912 chr4:79420928 nonsynonymous SNV 0.082 3 37 hm5C_associated_SNPs_34236 0 0 1 0 1 Nucleus 1 0.500231643921032 0.80773651599884 0.999536712157937 hm5C_site_34055 DeepMRMD:0.80773651599884;iRNA_m5C:0.999536712157937 34056 chr10 105185072 105185072 1 + C T SKCM 105185079 + 105185059 105185099 41 ATAAAGAAGCACACCCTCTCCATCGGGGACATGGTCACAGG ATAAAGAAGCACATCCTCTCCATCGGGGACATGGTCACAGG < 41bp 1 0.319230263943626 1 0.350723594427109 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105185079 chr10:105185072 nonsynonymous SNV 0.021 0 14 hm5C_associated_SNPs_34237 0 0 1 0 0 Nucleus 1 0.500231643912677 1 0.999536712174647 hm5C_site_34056 DeepMRMD:1;iRNA_m5C:0.999536712174647 34057 chr5 137754723 137754723 1 + C T SKCM 137754741 + 137754721 137754761 41 CTCCAGAGCCGGACCATGTTCCCAAAGCCGACAGCACTGAC CTTCAGAGCCGGACCATGTTCCCAAAGCCGACAGCACTGAC < 41bp 1 0.505899716921091 1 0.207416743040085 experiment 0.988200566157818 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137754741 chr5:137754723 nonsynonymous SNV 0.829 0 3 hm5C_associated_SNPs_34238 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34057 DeepMRMD:1;iRNA_m5C:0.999536712157815 34058 chr4 79396720 79396720 1 + C T SKCM 79396708 + 79396688 79396728 41 AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCTG AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTTCCAACCTG < 41bp 1 0.394177140687096 1 0.751869261264801 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79396708 chr4:79396720 nonsynonymous SNV 0.821 1 33 hm5C_associated_SNPs_34240 0 0 0 0 1 Nucleus 1 0.500231643921092 0.496261477470398 0.999536712157815 hm5C_site_34058 DeepMRMD:0.496261477470398;iRNA_m5C:0.999536712157815 34059 chr17 7479910 7479910 1 + C T SKCM 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACTAA < 41bp 1 0.644706955283011 1 0.196517735719681 experiment 0.710586089433977 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479910 stopgain . 0 39 hm5C_associated_SNPs_34241 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34059 DeepMRMD:1;iRNA_m5C:0.999536712157815 34060 chr17 7479910 7479910 1 + C T SKCM 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACTAACGT < 41bp 1 0.496356270885067 1 0.368875175714493 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479910 stopgain . 0 36 hm5C_associated_SNPs_34242 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34060 DeepMRMD:1;iRNA_m5C:0.999536712157815 34061 chr17 7479910 7479910 1 + C T SKCM 7479907 + 7479887 7479927 41 TGTCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT TGTCACGCCTGTATCGGGGGCACTAACGTGCGTGCTGAGGT < 41bp 1 0.291883821386632 1 0.151784211397171 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479907 chr17:7479910 stopgain . 0 24 hm5C_associated_SNPs_34243 0 0 1 0 1 Cytosol 1 0.500231643321754 1 0.999536713356491 hm5C_site_34061 DeepMRMD:1;iRNA_m5C:0.999536713356491 34062 chr17 7479910 7479910 1 + C T SKCM 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATCGGGGGCACTAACGTGCGTGCTGAGGTGC < 41bp 1 0.29352843519207 1 0.198339641094208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479910 stopgain . 0 22 hm5C_associated_SNPs_34244 0 0 1 0 1 Cytosol 1 0.500231620695433 1 0.999536758609134 hm5C_site_34062 DeepMRMD:1;iRNA_m5C:0.999536758609134 34063 chr17 7479909 7479909 1 + C T SKCM 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCATCAA < 41bp 1 0.642938897808623 1 0.0806262791156769 experiment 0.714122204382754 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479909 nonsynonymous SNV 0.988 2 38 hm5C_associated_SNPs_34245 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34063 DeepMRMD:1;iRNA_m5C:0.999536712157815 34064 chr17 7479909 7479909 1 + C T SKCM 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCATCAACGT < 41bp 1 0.53956848167265 1 0.284408986568451 experiment 0.920863036654701 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479909 nonsynonymous SNV 0.988 2 35 hm5C_associated_SNPs_34246 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34064 DeepMRMD:1;iRNA_m5C:0.999536712157815 34065 chr17 7479909 7479909 1 + C T SKCM 7479907 + 7479887 7479927 41 TGTCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT TGTCACGCCTGTATCGGGGGCATCAACGTGCGTGCTGAGGT < 41bp 1 0.244258546663927 1 0.0453645884990692 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479907 chr17:7479909 nonsynonymous SNV 0.988 2 23 hm5C_associated_SNPs_34247 0 0 1 0 1 Cytosol 1 0.500231649373009 1 0.999536701253982 hm5C_site_34065 DeepMRMD:1;iRNA_m5C:0.999536701253982 34066 chr17 7479909 7479909 1 + C T SKCM 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATCGGGGGCATCAACGTGCGTGCTGAGGTGCA < 41bp 1 0.511412458614704 1 0.519191443920135 experiment 0.977175082770593 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479909 nonsynonymous SNV 0.988 2 20 hm5C_associated_SNPs_34248 0 0 1 0 1 Cytosol 1 0.500231643921093 0.96161711215973 0.999536712157814 hm5C_site_34066 DeepMRMD:0.96161711215973;iRNA_m5C:0.999536712157814 34067 chr4 38937390 38937390 1 + G A SKCM 38937401 + 38937381 38937421 41 GAAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTAC GAAGTTTACAAATTCTTTAACCACTGTTGGGGTAAGATTAC < 41bp 1 0.0810049143052382 1 0.0774803459644318 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937401 chr4:38937390 synonymous SNV . 0 10 hm5C_associated_SNPs_34249 0 0 1 0 2 Cytosol 1 0.500231645930257 1 0.999536708139485 hm5C_site_34067 DeepMRMD:1;iRNA_m5C:0.999536708139485 34068 chr4 38937390 38937390 1 + G A SKCM 38937402 + 38937382 38937422 41 AAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTACA AAGTTTACAAATTCTTTAACCACTGTTGGGGTAAGATTACA < 41bp 1 0.190383930177714 1 0.119839519262314 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937402 chr4:38937390 synonymous SNV . 0 9 hm5C_associated_SNPs_34250 0 0 1 0 2 Cytosol 1 0.500231643918449 1 0.999536712163101 hm5C_site_34068 DeepMRMD:1;iRNA_m5C:0.999536712163101 34069 chr10 118314901 118314901 1 + G A SKCM 118314913 + 118314893 118314933 41 ATTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGA ATTTCAGGATTTGGAATGAGCCAAGTCGTGGGCCACCTAGA < 41bp 1 0.27366063590912 1 0.144433170557022 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314913 chr10:118314901 synonymous SNV . 0 9 hm5C_associated_SNPs_34251 0 0 0 0 0 unknown 1 0.500231643861262 1 0.999536712277476 hm5C_site_34069 DeepMRMD:1;iRNA_m5C:0.999536712277476 34070 chr10 118314901 118314901 1 + G A SKCM 118314914 + 118314894 118314934 41 TTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGAT TTTCAGGATTTGGAATGAGCCAAGTCGTGGGCCACCTAGAT < 41bp 1 0.519168665614803 1 0.304240167140961 experiment 0.961662668770394 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314914 chr10:118314901 synonymous SNV . 0 8 hm5C_associated_SNPs_34252 0 0 0 0 0 unknown 1 0.500231643920218 1 0.999536712159565 hm5C_site_34070 DeepMRMD:1;iRNA_m5C:0.999536712159565 34071 chr10 118314901 118314901 1 + G A SKCM 118314919 + 118314899 118314939 41 GGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTT GGATTTGGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTT < 41bp 1 0.625202455194748 1 0.250550448894501 experiment 0.749595089610505 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314919 chr10:118314901 synonymous SNV . 0 3 hm5C_associated_SNPs_34253 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_34071 DeepMRMD:1;iRNA_m5C:0.999536712157815 34072 chr2 211525356 211525356 1 + C T SKCM 211525357 + 211525337 211525377 41 ATTGGACCATCCCATAATTCCTGCTGACTATGTTGCAATTA ATTGGACCATCCCATAATTTCTGCTGACTATGTTGCAATTA < 41bp 1 0.368748172840903 1 0.148029386997223 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211525357 chr2:211525356 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_34254 0 0 1 0 1 Nucleus 1 0.500231645634798 1 0.999536708730403 hm5C_site_34072 DeepMRMD:1;iRNA_m5C:0.999536708730403 34073 chr1 78325048 78325048 1 + C T SKCM 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGAGACAGTGATTTTCTTGCCAAACTTTACTGTATTCGACA < 41bp 1 0.20067652229127 1 0.240795731544495 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325048 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_34255 0 0 0 0 2 unknown 1 0.500230030962022 1 0.999539938075955 hm5C_site_34073 DeepMRMD:1;iRNA_m5C:0.999539938075955 34074 chr6 28329233 28329233 1 + C T SKCM 28329230 + 28329210 28329250 41 AGCATGAATCTGTGGGATCCCAGCCTTTACAAGATAGAGGT AGCATGAATCTGTGGGATCCCAGTCTTTACAAGATAGAGGT < 41bp 1 0.281871625473161 1 0.217539101839066 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28329230 chr6:28329233 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_34256 0 0 0 0 1 exosome 1 0.500231643920827 1 0.999536712158346 hm5C_site_34074 DeepMRMD:1;iRNA_m5C:0.999536712158346 34075 chr17 71232451 71232451 1 + C T SKCM 71232445 + 71232425 71232465 41 TGAGACTCCAGAAAAGAACACAGAATCCCTCATTTTAAGCC TGAGACTCCAGAAAAGAACACAGAATTCCTCATTTTAAGCC < 41bp 1 0.566685514667194 1 0.180070787668228 experiment 0.866628970665612 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71232445 chr17:71232451 nonsynonymous SNV 0.081 4 27 hm5C_associated_SNPs_34257 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_34075 DeepMRMD:1;iRNA_m5C:0.999536712157815 34076 chr1 43296154 43296154 1 + C T SKCM 43296173 + 43296153 43296193 41 TCTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT TTTGGCTGCCTCATCCCTCTCGTCTTCCTCCGGCTGTCTGT < 41bp 1 0.285580013961867 1 0.0727404952049255 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ERMAP ENSG00000164010 CDS Human protein_coding chr1:43296173 chr1:43296154 nonsynonymous SNV 0.004 2 2 hm5C_associated_SNPs_34258 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_34076 DeepMRMD:1;iRNA_m5C:0.999536712157815 34077 chr14 105936402 105936402 1 + G A SKCM 105936408 + 105936388 105936428 41 ACCTCTGCCCACAGGAAGATCCGCAAGCTGCTCTCATCCTC ACCTCTGCCCACAGAAAGATCCGCAAGCTGCTCTCATCCTC < 41bp 1 0.655791956993421 1 0.204655975103378 experiment 0.688416086013157 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105936408 chr14:105936402 synonymous SNV . 0 15 hm5C_associated_SNPs_34259 0 0 1 0 1 Cytosol 1 0.500231643921308 1 0.999536712157383 hm5C_site_34077 DeepMRMD:1;iRNA_m5C:0.999536712157383 34078 chr11 65271690 65271690 1 + G A SKCM 65271692 + 65271672 65271712 41 GTTCTAGTGAGTGTATGAGACCTTGCAGTGAGTTTATCAGC GTTCTAGTGAGTGTATGAAACCTTGCAGTGAGTTTATCAGC < 41bp 1 0.149277378390651 1 0.133104503154755 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271692 chr11:65271690 . . 0 19 hm5C_associated_SNPs_34260 0 0 1 2 0 unknown 1 0.500231643812678 1 0.999536712374644 hm5C_site_34078 DeepMRMD:1;iRNA_m5C:0.999536712374644 34079 chr1 10195157 10195157 1 + C T SKCM 10195142 + 10195122 10195162 41 TCAAGTTAGAAACAGTTGATCCCACGTATATTTTTCACCCA TCAAGTTAGAAACAGTTGATCCCACGTATATTTTTTACCCA < 41bp 1 0.0848947970032103 1 0.239847153425217 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10195142 chr1:10195157 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_34261 0 0 1 0 1 Cytosol 1 0.500231645458141 1 0.999536709083717 hm5C_site_34079 DeepMRMD:1;iRNA_m5C:0.999536709083717 34080 chr19 10200677 10200677 1 + C T SKCM 10200684 + 10200664 10200704 41 CAGTTTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCG CAGTTTGCCTGCTTCTCCTGCGACCACGTCTGGTGGCGCCG < 41bp 1 0.226316636366508 1 0.439065128564835 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200684 chr19:10200677 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_34262 0 0 1 0 1 Ribosome 1 0.500231643921036 1 0.999536712157928 hm5C_site_34080 DeepMRMD:1;iRNA_m5C:0.999536712157928 34081 chr19 10200677 10200677 1 + C T SKCM 10200688 + 10200668 10200708 41 TTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCGCGTG TTGCCTGCTTCTCCTGCGACCACGTCTGGTGGCGCCGCGTG < 41bp 1 0.611695081404992 1 0.39609158039093 experiment 0.776609837190016 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200688 chr19:10200677 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_34263 0 0 1 0 1 Ribosome 1 0.500231643929246 1 0.999536712141508 hm5C_site_34081 DeepMRMD:1;iRNA_m5C:0.999536712141508 34082 chr12 57911162 57911162 1 + A C SKCM 57911153 - 57911133 57911173 41 TGCCTTTCTCCTTCGGGACACTGTCCAGCTGGGAGCTGGAA TGCCTTTCTCCGTCGGGACACTGTCCAGCTGGGAGCTGGAA < 41bp 1 0.277968592048847 1 0.0977661311626434 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911153 chr12:57911162 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_34264 0 0 1 0 2 Cytosol 1 0.500231631229105 1 0.999536737541791 hm5C_site_34082 DeepMRMD:1;iRNA_m5C:0.999536737541791 34083 chr19 50880885 50880885 1 + C T SKCM 50880899 + 50880879 50880919 41 CGAGTTCCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT CGAGTTTCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT < 41bp 1 0.167020938273548 1 0.490807205438614 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50880899 chr19:50880885 nonsynonymous SNV 0.397 3 7 hm5C_associated_SNPs_34265 0 0 1 0 2 Ribosome 1 0.500231643922249 1 0.999536712155501 hm5C_site_34083 DeepMRMD:1;iRNA_m5C:0.999536712155501 34084 chr5 138651821 138651821 1 + C T SKCM 138651827 + 138651807 138651847 41 AGGAATTCTGGGACCTCCACCTCCCTCATTTCATCTTGGGG AGGAATTCTGGGACTTCCACCTCCCTCATTTCATCTTGGGG < 41bp 1 0.284535003150572 1 0.570030152797699 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MATR3 ENSG00000015479 CDS Human protein_coding chr5:138651827 chr5:138651821 nonsynonymous SNV 0.992 3 15 hm5C_associated_SNPs_34266 0 0 1 0 2 Nucleus 1 0.500231643921092 0.859939694404602 0.999536712157815 hm5C_site_34084 DeepMRMD:0.859939694404602;iRNA_m5C:0.999536712157815 34085 chr16 27374340 27374340 1 + G A SKCM 27374351 + 27374331 27374371 41 TCCTCCGCCGAAATGTCCTCCAGCATGGGGCAGCTGCAGCC TCCTCCGCCAAAATGTCCTCCAGCATGGGGCAGCTGCAGCC < 41bp 1 0.655593898123759 1 0.437134981155396 experiment 0.688812203752482 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IL4R ENSG00000077238 CDS Human protein_coding chr16:27374351 chr16:27374340 nonsynonymous SNV 0.148 0 10 hm5C_associated_SNPs_34267 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157811 hm5C_site_34085 DeepMRMD:1;iRNA_m5C:0.999536712157811 34086 chr3 184040702 184040702 1 + C T SKCM 184040721 + 184040701 184040741 41 CCAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA CTAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA < 41bp 1 0.649307335195041 1 0.389752596616745 experiment 0.701385329609918 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184040721 chr3:184040702 nonsynonymous SNV 0.984 3 2 hm5C_associated_SNPs_34268 0 0 1 0 2 Nucleus 1 0.500231643924218 1 0.999536712151564 hm5C_site_34086 DeepMRMD:1;iRNA_m5C:0.999536712151564 34087 chr1 22333991 22333991 1 + A G SKCM 22333990 + 22333970 22334010 41 ATGGTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGT ATGGTGTGTGCTGGAGGGTACGTCCGCTCCGGCTGCAACGT < 41bp 1 0.254468389536572 1 0.0983447134494781 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333990 chr1:22333991 nonsynonymous SNV 0.004 1 22 hm5C_associated_SNPs_34269 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_34087 DeepMRMD:1;iRNA_m5C:0.999536712157815 34088 chr1 22333991 22333991 1 + A G SKCM 22333993 + 22333973 22334013 41 GTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAG GTGTGTGCTGGAGGGTACGTCCGCTCCGGCTGCAACGTGAG < 41bp 1 0.359173505422067 1 0.148687422275543 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333993 chr1:22333991 nonsynonymous SNV 0.004 1 19 hm5C_associated_SNPs_34270 0 0 0 0 1 Endoplasmic reticulum 1 0.500244515312266 1 0.999510969375468 hm5C_site_34088 DeepMRMD:1;iRNA_m5C:0.999510969375468 34089 chr1 22333991 22333991 1 + A G SKCM 22333994 + 22333974 22334014 41 TGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGT TGTGTGCTGGAGGGTACGTCCGCTCCGGCTGCAACGTGAGT < 41bp 1 0.239635006458401 1 0.352845340967178 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333994 chr1:22333991 nonsynonymous SNV 0.004 1 18 hm5C_associated_SNPs_34271 0 0 0 0 1 Endoplasmic reticulum 1 0.500231553351097 1 0.999536893297806 hm5C_site_34089 DeepMRMD:1;iRNA_m5C:0.999536893297806 34090 chr1 22333991 22333991 1 + A G SKCM 22333998 + 22333978 22334018 41 TGCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGC TGCTGGAGGGTACGTCCGCTCCGGCTGCAACGTGAGTCAGC < 41bp 1 0.457978903064207 1 0.382031202316284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333998 chr1:22333991 nonsynonymous SNV 0.004 1 14 hm5C_associated_SNPs_34272 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164400216 1 0.99953671199568 hm5C_site_34090 DeepMRMD:1;iRNA_m5C:0.99953671199568 34091 chr1 22333991 22333991 1 + A G SKCM 22333999 + 22333979 22334019 41 GCTGGAGGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCT GCTGGAGGGTACGTCCGCTCCGGCTGCAACGTGAGTCAGCT < 41bp 1 0.585828031041376 1 0.339923024177551 experiment 0.828343937917247 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333999 chr1:22333991 nonsynonymous SNV 0.004 1 13 hm5C_associated_SNPs_34273 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643911289 1 0.999536712177422 hm5C_site_34091 DeepMRMD:1;iRNA_m5C:0.999536712177422 34092 chr1 22333991 22333991 1 + A G SKCM 22334005 + 22333985 22334025 41 GGGTACATCCGCTCCGGCTGCAACGTGAGTCAGCTCTTACC GGGTACGTCCGCTCCGGCTGCAACGTGAGTCAGCTCTTACC < 41bp 1 0.499645847887679 1 0.3107068836689 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22334005 chr1:22333991 nonsynonymous SNV 0.004 1 7 hm5C_associated_SNPs_34275 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392111 1 0.99953671215778 hm5C_site_34092 DeepMRMD:1;iRNA_m5C:0.99953671215778 34093 chr19 757502 757502 1 + G A SKCM 757482 + 757462 757502 41 CCCCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGG CCCCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGA < 41bp 1 0.315448123725721 1 0.0463781654834747 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757482 chr19:757502 nonsynonymous SNV 0.095 0 41 hm5C_associated_SNPs_34276 0 0 0 0 0 nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_34093 DeepMRMD:1;iRNA_m5C:0.999536712157815 34094 chr19 757502 757502 1 + G A SKCM 757484 + 757464 757504 41 CCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTT CCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGATT < 41bp 1 0.211159167840985 1 0.129768878221512 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757484 chr19:757502 nonsynonymous SNV 0.095 0 39 hm5C_associated_SNPs_34277 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34094 DeepMRMD:1;iRNA_m5C:0.999536712157815 34095 chr19 757502 757502 1 + G A SKCM 757485 + 757465 757505 41 CGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTG CGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGATTG < 41bp 1 0.158763146812837 1 0.413473814725876 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757485 chr19:757502 nonsynonymous SNV 0.095 0 38 hm5C_associated_SNPs_34278 0 0 0 0 0 nucleus 1 0.500230782256468 1 0.999538435487064 hm5C_site_34095 DeepMRMD:1;iRNA_m5C:0.999538435487064 34096 chr19 757502 757502 1 + G A SKCM 757486 + 757466 757506 41 GGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTGA GGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGATTGA < 41bp 1 0.24974761222633 1 0.420552551746368 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757486 chr19:757502 nonsynonymous SNV 0.095 0 37 hm5C_associated_SNPs_34279 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34096 DeepMRMD:1;iRNA_m5C:0.999536712157815 34097 chr16 20926983 20926983 1 + G A SKCM 20926976 + 20926956 20926996 41 TCAGGGCAGATGGAAGACACCATCAAAGAAAAACAGTACAT TCAGGGCAGATGGAAGACACCATCAAAAAAAAACAGTACAT < 41bp 1 0.662352556771074 1 0.157408475875854 experiment 0.675294886457852 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LYRM1 ENSG00000102897 CDS Human protein_coding chr16:20926976 chr16:20926983 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_34280 0 0 0 0 1 Ribosome 1 0.500231643778554 1 0.999536712442891 hm5C_site_34097 DeepMRMD:1;iRNA_m5C:0.999536712442891 34098 chr5 71648498 71648498 1 + G A SKCM 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGAAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.44396315631925 1 0.636243164539337 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648498 nonsynonymous SNV 0.763 0 3 hm5C_associated_SNPs_34281 0 0 0 0 2 chromatin 1 0.500231584460624 0.727513670921326 0.999536831078752 hm5C_site_34098 DeepMRMD:0.727513670921326;iRNA_m5C:0.999536831078752 34099 chr7 2472430 2472430 1 + C T SKCM 2472416 + 2472396 2472436 41 CTAGGCCGCACACGGGGCCGCCGCTGCCCACGCCCGGGCCG CTAGGCCGCACACGGGGCCGCCGCTGCCCACGCCTGGGCCG < 41bp 1 0.50647857732478 1 0.144269704818726 experiment 0.98704284535044 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472416 chr7:2472430 synonymous SNV . 0 35 hm5C_associated_SNPs_34282 0 0 1 0 0 nucleolus 1 0.500231643921093 1 0.999536712157814 hm5C_site_34099 DeepMRMD:1;iRNA_m5C:0.999536712157814 34100 chr7 2472430 2472430 1 + C T SKCM 2472435 + 2472415 2472455 41 GCCGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCA GCCGCTGCCCACGCCTGGGCCGGACAGGGACAGGGAGCTCA < 41bp 1 0.457119711616803 1 0.186184018850327 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472435 chr7:2472430 synonymous SNV . 0 16 hm5C_associated_SNPs_34283 0 0 1 0 0 nucleolus 1 0.500231642973116 1 0.999536714053768 hm5C_site_34100 DeepMRMD:1;iRNA_m5C:0.999536714053768 34101 chr19 41807533 41807533 1 + C G SKCM 41807534 + 41807514 41807554 41 TTTGTCCCACTGACGAGGACCTAAAAGACCGAACAATAAAG TTTGTCCCACTGACGAGGAGCTAAAAGACCGAACAATAAAG < 41bp 1 0.300706778370096 1 0.313323795795441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41807534 chr19:41807533 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_34284 0 0 1 0 2 Cytosol 1 0.500231644420528 1 0.999536711158944 hm5C_site_34101 DeepMRMD:1;iRNA_m5C:0.999536711158944 34102 chr12 14927470 14927470 1 + G A SKCM 14927458 + 14927438 14927478 41 CGAGCAAAGGCCAAATCCCGCTCCTCCCGCGCGGGCCTGCA CGAGCAAAGGCCAAATCCCGCTCCTCCCGCGCAGGCCTGCA < 41bp 1 0.592751938388975 1 0.120920985937119 experiment 0.814496123222049 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control H2AFJ ENSG00000246705 CDS Human protein_coding chr12:14927458 chr12:14927470 synonymous SNV . 0 33 hm5C_associated_SNPs_34285 0 0 1 0 0 Ribosome 1 0.500231643921086 1 0.999536712157828 hm5C_site_34102 DeepMRMD:1;iRNA_m5C:0.999536712157828 34103 chr11 65273607 65273607 1 + C T SKCM 65273608 + 65273588 65273628 41 GATGCTGGTGGTTGGCACTCCTGGTTTCCAGGACGGGGTTC GATGCTGGTGGTTGGCACTTCTGGTTTCCAGGACGGGGTTC < 41bp 1 0.651433135642443 1 0.471197247505188 experiment 0.697133728715113 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;MASCRNA;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273608 chr11:65273607 . . 0 20 hm5C_associated_SNPs_34286 0 0 0 2 0 unknown 1 0.500231643921088 1 0.999536712157824 hm5C_site_34103 DeepMRMD:1;iRNA_m5C:0.999536712157824 34104 chr5 176710809 176710809 1 + C T SKCM 176710791 + 176710771 176710811 41 TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTCCC TTCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTTCC < 41bp 1 0.0688941347459917 1 0.281943678855896 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176710791 chr5:176710809 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_34287 0 0 1 0 1 Nucleus 1 0.500231643925432 1 0.999536712149137 hm5C_site_34104 DeepMRMD:1;iRNA_m5C:0.999536712149137 34105 chr22 39918064 39918064 1 + C A SKCM 39918059 + 39918039 39918079 41 TTCCCCTTTCCCCAGGGGTCCTGTCCTCCACTCCAGATCAT TTCCCCTTTCCCCAGGGGTCCTGTCATCCACTCCAGATCAT < 41bp 1 0.209645432886396 1 0.0178658366203308 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ATF4 ENSG00000128272 CDS Human protein_coding chr22:39918059 chr22:39918064 synonymous SNV . 0 26 hm5C_associated_SNPs_34289 0 0 1 0 0 Ribosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_34105 DeepMRMD:1;iRNA_m5C:0.999536712157811 34106 chr11 209910 209910 1 + C T SKCM 209927 + 209907 209947 41 GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCC GCTTCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCC < 41bp 1 0.590738986180135 1 0.143212020397186 experiment 0.818522027639731 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209927 chr11:209910 synonymous SNV . 0 4 hm5C_associated_SNPs_34290 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_34106 DeepMRMD:1;iRNA_m5C:0.999536712157815 34107 chr12 57599031 57599031 1 + C T SKCM 57599013 + 57598993 57599033 41 GACTGCGGGGACGGCTCTGACGAGGAGGACTGCAGCATCGG GACTGCGGGGACGGCTCTGACGAGGAGGACTGCAGCATTGG < 41bp 1 0.478077722697799 1 0.935868740081787 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599013 chr12:57599031 synonymous SNV . 0 39 hm5C_associated_SNPs_34291 0 0 1 0 1 Exosome 1 0.500225251774754 0.128262519836426 0.999549496450492 hm5C_site_34107 DeepMRMD:0.128262519836426;iRNA_m5C:0.999549496450492 34108 chr11 73638353 73638353 1 + C T SKCM 73638335 + 73638315 73638355 41 ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCTA ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATTTA < 41bp 1 0.587250703190264 1 0.818471074104309 experiment 0.825498593619472 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73638335 chr11:73638353 synonymous SNV . 0 39 hm5C_associated_SNPs_34292 0 0 1 0 1 Ribosome 1 0.500231643921095 0.363057851791382 0.99953671215781 hm5C_site_34108 DeepMRMD:0.363057851791382;iRNA_m5C:0.99953671215781 34109 chr9 33799159 33799159 1 + C T SKCM 33799160 + 33799140 33799180 41 GTGGACTGGATTAAGGACACCATCGCTGCCAACAGCTAAAG GTGGACTGGATTAAGGACATCATCGCTGCCAACAGCTAAAG < 41bp 1 0.319076096932582 1 0.048163115978241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRSS3 ENSG00000010438 CDS Human protein_coding chr9:33799160 chr9:33799159 nonsynonymous SNV 0.071 2 20 hm5C_associated_SNPs_34293 0 0 0 0 0 Ribosome 1 0.500231634851322 1 0.999536730297356 hm5C_site_34109 DeepMRMD:1;iRNA_m5C:0.999536730297356 34110 chr3 62189579 62189579 1 + G A SKCM 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCGCAGGGACCGATTTTCTGAAGACAGCAGA < 41bp 1 0.105616366573342 1 0.0945262908935547 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189579 nonsynonymous SNV 0.932 1 15 hm5C_associated_SNPs_34294 0 0 0 0 1 Ribosome 1 0.500231643923165 1 0.99953671215367 hm5C_site_34110 DeepMRMD:1;iRNA_m5C:0.99953671215367 34111 chr9 131669672 131669672 1 + C T SKCM 131669678 + 131669658 131669698 41 GGGCAGCCCCTGGCCCGGAGCCCACCTACCCCAACTCCACC GGGCAGCCCCTGGCTCGGAGCCCACCTACCCCAACTCCACC < 41bp 1 0.0927794358325501 1 0.160409033298492 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC8A ENSG00000136802 CDS Human protein_coding chr9:131669678 chr9:131669672 nonsynonymous SNV 0.552 0 15 hm5C_associated_SNPs_34295 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_34111 DeepMRMD:1;iRNA_m5C:0.999536712157814 34112 chr3 51737762 51737762 1 + G A SKCM 51737759 + 51737739 51737779 41 GGAGCTGACACAATGAGTGACACGAGTTCTGTAAGCTTGGA GGAGCTGACACAATGAGTGACACAAGTTCTGTAAGCTTGGA < 41bp 1 0.558388619915316 1 0.227026134729385 experiment 0.883222760169368 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TEX264 ENSG00000164081 CDS Human protein_coding chr3:51737759 chr3:51737762 synonymous SNV . 0 24 hm5C_associated_SNPs_34296 0 0 1 0 1 Ribosome 1 0.500231590193352 1 0.999536819613297 hm5C_site_34112 DeepMRMD:1;iRNA_m5C:0.999536819613297 34113 chr3 51737762 51737762 1 + G A SKCM 51737767 + 51737747 51737787 41 CACAATGAGTGACACGAGTTCTGTAAGCTTGGAAGTGAGCC CACAATGAGTGACACAAGTTCTGTAAGCTTGGAAGTGAGCC < 41bp 1 0.500900562271461 1 0.281080305576324 experiment 0.998198875457077 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TEX264 ENSG00000164081 CDS Human protein_coding chr3:51737767 chr3:51737762 synonymous SNV . 0 16 hm5C_associated_SNPs_34297 0 0 1 0 1 Ribosome 1 0.5002316432885 1 0.999536713423 hm5C_site_34113 DeepMRMD:1;iRNA_m5C:0.999536713423 34114 chr7 150764051 150764051 1 + C T SKCM 150764061 + 150764041 150764081 41 ACCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGG ACCTCGGGCCTGACCCCGGGCCCCCCACAAGCCCCATGAGG < 41bp 1 0.0432999263452664 1 0.102660834789276 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764061 chr7:150764051 stopgain 0.799 0 11 hm5C_associated_SNPs_34298 0 0 1 0 1 Ribosome 1 0.500231643921059 1 0.999536712157881 hm5C_site_34114 DeepMRMD:1;iRNA_m5C:0.999536712157881 34115 chr7 150764051 150764051 1 + C T SKCM 150764062 + 150764042 150764082 41 CCTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGT CCTCGGGCCTGACCCCGGGCCCCCCACAAGCCCCATGAGGT < 41bp 1 0.0379588068154525 1 0.0770180523395538 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764062 chr7:150764051 stopgain 0.799 0 10 hm5C_associated_SNPs_34299 0 0 1 0 1 Ribosome 1 0.500231643921036 1 0.999536712157929 hm5C_site_34115 DeepMRMD:1;iRNA_m5C:0.999536712157929 34116 chr7 150764051 150764051 1 + C T SKCM 150764063 + 150764043 150764083 41 CTCGGGCCCGACCCCGGGCCCCCCACAAGCCCCATGAGGTA CTCGGGCCTGACCCCGGGCCCCCCACAAGCCCCATGAGGTA < 41bp 1 0.298652111452594 1 0.139803797006607 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150764063 chr7:150764051 stopgain 0.799 0 9 hm5C_associated_SNPs_34300 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34116 DeepMRMD:1;iRNA_m5C:0.999536712157815 34117 chr1 57161680 57161680 1 + C T SKCM 57161696 + 57161676 57161716 41 CCCTCCCATTTGATGATGAGCATGTACCTACGTTATTTAAG CCCTTCCATTTGATGATGAGCATGTACCTACGTTATTTAAG < 41bp 1 0.167084907612328 1 0.0423670709133148 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57161696 chr1:57161680 synonymous SNV . 0 5 hm5C_associated_SNPs_34301 0 0 1 0 1 Endoplasmic reticulum 1 0.5002322357386 1 0.999535528522801 hm5C_site_34117 DeepMRMD:1;iRNA_m5C:0.999535528522801 34118 chr6 160212136 160212136 1 + C T SKCM 160212137 + 160212117 160212157 41 GGGCTGGCGGACGGTGTTTCCCTCCCGTGAGTTCTGGCACA GGGCTGGCGGACGGTGTTTTCCTCCCGTGAGTTCTGGCACA < 41bp 1 0.289132856560905 1 0.273190885782242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160212137 chr6:160212136 nonsynonymous SNV 0.293 4 20 hm5C_associated_SNPs_34302 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34118 DeepMRMD:1;iRNA_m5C:0.999536712157815 34119 chr4 6925405 6925405 1 + C T SKCM 6925415 + 6925395 6925435 41 CGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTGCGCGC CGACCTCATCTCCGAGCGGGCCTTCCAGAGCGCCTGCGCGC < 41bp 1 0.0253744721784663 1 0.0465551316738129 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:6925415 chr4:6925405 nonsynonymous SNV 0.036 1 11 hm5C_associated_SNPs_34303 0 0 1 0 0 Cytosol 1 0.500229932450652 1 0.999540135098696 hm5C_site_34119 DeepMRMD:1;iRNA_m5C:0.999540135098696 34120 chr11 65267942 65267942 1 + T A SKCM 65267924 + 65267904 65267944 41 AGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGATGA AGACAGCAGCAGACAGGATTCCAGGAACCAGTGTTTGAAGA < 41bp 1 0.63397306810958 1 0.838289260864258 experiment 0.732053863780839 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267924 chr11:65267942 . . 0 39 hm5C_associated_SNPs_34304 0 0 1 0 0 unknown 1 0.500231615200637 0.323421478271484 0.999536769598727 hm5C_site_34120 DeepMRMD:0.323421478271484;iRNA_m5C:0.999536769598727 34121 chr11 65267942 65267942 1 + T A SKCM 65267931 + 65267911 65267951 41 AGCAGACAGGATTCCAGGAACCAGTGTTTGATGAAGCTAGG AGCAGACAGGATTCCAGGAACCAGTGTTTGAAGAAGCTAGG < 41bp 1 0.347179581609367 1 0.258571118116379 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267931 chr11:65267942 . . 0 32 hm5C_associated_SNPs_34305 0 0 1 0 0 unknown 1 0.500231654316657 1 0.999536691366686 hm5C_site_34121 DeepMRMD:1;iRNA_m5C:0.999536691366686 34122 chr11 65267942 65267942 1 + T A SKCM 65267961 + 65267941 65267981 41 ATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTC AAGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTC < 41bp 1 0.588478610143954 1 0.430638879537582 experiment 0.823042779712092 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267961 chr11:65267942 . . 0 2 hm5C_associated_SNPs_34307 0 0 1 0 0 unknown 1 0.500231648003078 1 0.999536703993844 hm5C_site_34122 DeepMRMD:1;iRNA_m5C:0.999536703993844 34123 chr4 6925404 6925404 1 + C T SKCM 6925415 + 6925395 6925435 41 CGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTGCGCGC CGACCTCATTCCCGAGCGGGCCTTCCAGAGCGCCTGCGCGC < 41bp 1 0.025777800457521 1 0.0218973159790039 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:6925415 chr4:6925404 synonymous SNV . 0 10 hm5C_associated_SNPs_34308 0 0 1 0 0 Cytosol 1 0.50023172261238 1 0.99953655477524 hm5C_site_34123 DeepMRMD:1;iRNA_m5C:0.99953655477524 34124 chr8 124787428 124787428 1 + C T SKCM 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAATTGCTAAAGTACAGCCGAGATCATCTCATGCT < 41bp 1 0.404637632316744 1 0.171858578920364 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787428 synonymous SNV . 0 10 hm5C_associated_SNPs_34309 0 0 1 0 1 Ribosome 1 0.50023164392107 1 0.99953671215786 hm5C_site_34124 DeepMRMD:1;iRNA_m5C:0.99953671215786 34125 chr1 154988852 154988852 1 + G A SKCM 154988871 + 154988851 154988891 41 AGGCTTTCGCCAAGGAGGACCACCTGCAGCGCCACCTCAAA AAGCTTTCGCCAAGGAGGACCACCTGCAGCGCCACCTCAAA < 41bp 1 0.224359487995705 1 0.239701867103577 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154988871 chr1:154988852 synonymous SNV . 0 2 hm5C_associated_SNPs_34310 0 0 1 0 0 chromatin 1 0.500231634940896 1 0.999536730118208 hm5C_site_34125 DeepMRMD:1;iRNA_m5C:0.999536730118208 34126 chr21 45876556 45876556 1 + C T SKCM 45876551 + 45876531 45876571 41 GGCACCGTGCGCCCACCTCGCCCCTCGCTCCTGCTGGTCTC GGCACCGTGCGCCCACCTCGCCCCTTGCTCCTGCTGGTCTC < 41bp 1 0.427798193659141 1 0.122720569372177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRRC3 ENSG00000160233 CDS Human protein_coding chr21:45876551 chr21:45876556 nonsynonymous SNV 0.002 0 26 hm5C_associated_SNPs_34311 0 0 1 0 0 exosome 1 0.500231635313727 1 0.999536729372545 hm5C_site_34126 DeepMRMD:1;iRNA_m5C:0.999536729372545 34127 chr19 41077994 41077994 1 + G A SKCM 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCAGCATCCGGGAGCACACACGGTGGGG < 41bp 1 0.386908172170498 1 0.856758534908295 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41077994 synonymous SNV . 0 16 hm5C_associated_SNPs_34312 0 0 1 0 1 cytosol 1 0.500231621968862 0.28648293018341 0.999536756062276 hm5C_site_34127 DeepMRMD:0.28648293018341;iRNA_m5C:0.999536756062276 34128 chr3 113784185 113784185 1 + C T SKCM 113784180 + 113784160 113784200 41 ACCTGGGCAAAACAGGGGACCACACCATGGATATTCCAGGC ACCTGGGCAAAACAGGGGACCACACTATGGATATTCCAGGC < 41bp 1 0.311733793085142 1 0.124648749828339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT2 ENSG00000151576 CDS Human protein_coding chr3:113784180 chr3:113784185 synonymous SNV . 0 26 hm5C_associated_SNPs_34314 0 0 1 0 0 Nucleus 1 0.500231643912822 1 0.999536712174357 hm5C_site_34128 DeepMRMD:1;iRNA_m5C:0.999536712174357 34129 chr22 24217312 24217312 1 + C T SKCM 24217331 + 24217311 24217351 41 TCCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAAT TTCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAAT < 41bp 1 0.120906571381172 1 0.199917733669281 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A11 ENSG00000133460;ENSG00000251357 CDS Human other chr22:24217331 chr22:24217312 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_34315 0 0 0 0 2 nucleoplasm 1 0.500232048088986 1 0.999535903822029 hm5C_site_34129 DeepMRMD:1;iRNA_m5C:0.999535903822029 34130 chr16 2577843 2577843 1 + C T SKCM 2577853 + 2577833 2577873 41 CACCTCCGCTCCTTCGAGGCCGATGCCTTCCAGGACTTGCT CACCTCCGCTTCTTCGAGGCCGATGCCTTCCAGGACTTGCT < 41bp 1 0.119297170180956 1 0.134127885103226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577853 chr16:2577843 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_34316 0 0 1 0 1 Ribosome 1 0.500231643921048 1 0.999536712157903 hm5C_site_34130 DeepMRMD:1;iRNA_m5C:0.999536712157903 34131 chr8 145535489 145535489 1 + C T SKCM 145535495 + 145535475 145535515 41 GGCTCCTGCCAGCCCCATGGCCTCCCCCGGCGGGAGCATAG GGCTCCTGCCAGCCTCATGGCCTCCCCCGGCGGGAGCATAG < 41bp 1 0.0360845268805103 1 0.0591858625411987 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535495 chr8:145535489 nonsynonymous SNV 0.069 2 15 hm5C_associated_SNPs_34317 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_34131 DeepMRMD:1;iRNA_m5C:0.999536712157814 34132 chr21 40191432 40191432 1 + C T SKCM 40191451 + 40191431 40191471 41 TCCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT TTCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT < 41bp 1 0.555939311448587 1 0.425661206245422 experiment 0.888121377102825 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191451 chr21:40191432 nonsynonymous SNV 0.061 0 2 hm5C_associated_SNPs_34318 0 0 1 0 1 Ribosome 1 0.500231643921113 1 0.999536712157775 hm5C_site_34132 DeepMRMD:1;iRNA_m5C:0.999536712157775 34133 chr8 145537219 145537219 1 + G A SKCM 145537206 + 145537186 145537226 41 TCCCGGGCCAGGAATGAGCTCAGTGACCACTTGGATGCTAT TCCCGGGCCAGGAATGAGCTCAGTGACCACTTGAATGCTAT < 41bp 1 0.271973991010469 1 0.202505379915237 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145537206 chr8:145537219 nonsynonymous SNV 0.994 3 34 hm5C_associated_SNPs_34319 0 0 1 0 2 chromatin 1 0.500231644306833 1 0.999536711386334 hm5C_site_34133 DeepMRMD:1;iRNA_m5C:0.999536711386334 34134 chr2 216197195 216197195 1 + C T SKCM 216197204 + 216197184 216197224 41 TTTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCC TTTAGGTATTCTAGCCGCTGCCTCTTTCAAACATGTCAGCC < 41bp 1 0.0397841550511465 1 0.094255119562149 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197204 chr2:216197195 nonsynonymous SNV 0.392 3 12 hm5C_associated_SNPs_34320 0 0 1 0 2 chromatin 1 0.500231643864548 1 0.999536712270904 hm5C_site_34134 DeepMRMD:1;iRNA_m5C:0.999536712270904 34135 chr2 216197195 216197195 1 + C T SKCM 216197205 + 216197185 216197225 41 TTAGGTATTCCAGCCGCTGCCTCTTTCAAACATGTCAGCCC TTAGGTATTCTAGCCGCTGCCTCTTTCAAACATGTCAGCCC < 41bp 1 0.377925078049815 1 0.312017202377319 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216197205 chr2:216197195 nonsynonymous SNV 0.392 3 11 hm5C_associated_SNPs_34321 0 0 1 0 2 chromatin 1 0.500231628662717 1 0.999536742674566 hm5C_site_34135 DeepMRMD:1;iRNA_m5C:0.999536742674566 34136 chr19 590414 590414 1 + G A SKCM 590396 + 590376 590416 41 CGGGCAGCGAGGAGGCGGGCCCGGCGGGGGAGCCGCGCGGC CGGGCAGCGAGGAGGCGGGCCCGGCGGGGGAGCCGCGCAGC < 41bp 1 0.536340844521283 1 0.594491243362427 experiment 0.927318310957434 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCN2 ENSG00000099822 CDS Human protein_coding chr19:590396 chr19:590414 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_34323 0 0 0 0 0 chromatin 1 0.500231643921194 0.811017513275146 0.999536712157613 hm5C_site_34136 DeepMRMD:0.811017513275146;iRNA_m5C:0.999536712157613 34137 chr2 128184767 128184767 1 + G A SKCM 128184754 + 128184734 128184774 41 CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGT CCCCTCCTGGGTGCTGACAGCGGCCCACTGCATAGATGAGT < 41bp 1 0.307086184787992 1 0.421712130308151 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128184754 chr2:128184767 nonsynonymous SNV 0.914 1 34 hm5C_associated_SNPs_34324 0 0 1 0 2 nucleus 1 0.500231645767386 1 0.999536708465228 hm5C_site_34137 DeepMRMD:1;iRNA_m5C:0.999536708465228 34138 chr15 91456116 91456116 1 + C T SKCM 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACGTCTCCAAGGAGCCCCCCGTGCTGCG < 41bp 1 0.639139767524441 1 0.906576037406921 experiment 0.721720464951118 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456116 nonsynonymous SNV 0.912 1 19 hm5C_associated_SNPs_34325 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 0.186847925186158 0.999536712157815 hm5C_site_34138 DeepMRMD:0.186847925186158;iRNA_m5C:0.999536712157815 34139 chr15 22969243 22969243 1 + C T SKCM 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACGCTGGACGGCTTCGACGCTATGTTCCG < 41bp 1 0.498454496936869 1 0.138929188251495 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969243 synonymous SNV . 0 33 hm5C_associated_SNPs_34326 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_34139 DeepMRMD:1;iRNA_m5C:0.999536712157817 34140 chr20 30738490 30738490 1 + C T SKCM 30738486 + 30738466 30738506 41 GCTCTCATGACCACAGCCTGCTTCCTCTTCATGTTCATGGG GCTCTCATGACCACAGCCTGCTTCTTCTTCATGTTCATGGG < 41bp 1 0.21862976171069 1 0.0218274593353271 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30738486 chr20:30738490 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_34327 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_34140 DeepMRMD:1;iRNA_m5C:0.999536712157815 34141 chr21 33785321 33785321 1 + G T SKCM 33785319 + 33785299 33785339 41 CTCAGCGCTCACCGACTTCTCTGGTAAGAGCGCCCTCCCTG CTCAGCGCTCACCGACTTCTCTTGTAAGAGCGCCCTCCCTG < 41bp 1 0.534625035005064 1 0.11529666185379 experiment 0.930749929989872 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33785319 chr21:33785321 stopgain 0.999 4 23 hm5C_associated_SNPs_34328 0 0 0 3 1 Ribosome 1 0.500231643913785 1 0.99953671217243 hm5C_site_34141 DeepMRMD:1;iRNA_m5C:0.99953671217243 34142 chr8 126194372 126194372 1 + C T SKCM 126194360 + 126194340 126194380 41 CTTAGGTGAAAGAAGAACGTCCAGAAAAAATACCAGATTTA CTTAGGTGAAAGAAGAACGTCCAGAAAAAATATCAGATTTA < 41bp 1 0.326451499826273 1 0.212933897972107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSMCE2 ENSG00000156831 CDS Human protein_coding chr8:126194360 chr8:126194372 nonsynonymous SNV 0.982 1 33 hm5C_associated_SNPs_34329 0 0 1 0 1 Cytosol 1 0.500231653309504 1 0.999536693380992 hm5C_site_34142 DeepMRMD:1;iRNA_m5C:0.999536693380992 34143 chr7 101188654 101188654 1 + G A SKCM 101188639 + 101188619 101188659 41 GGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAG GGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTAGAGAG < 41bp 1 0.301256825121782 1 0.327515482902527 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188639 chr7:101188654 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_34330 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_34143 DeepMRMD:1;iRNA_m5C:0.999536712157816 34144 chr7 101188654 101188654 1 + G A SKCM 101188640 + 101188620 101188660 41 GCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGA GCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTAGAGAGA < 41bp 1 0.303460719884067 1 0.197861969470978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188640 chr7:101188654 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_34331 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34144 DeepMRMD:1;iRNA_m5C:0.999536712157815 34145 chr7 101188654 101188654 1 + G A SKCM 101188641 + 101188621 101188661 41 CTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGAT CTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTAGAGAGAT < 41bp 1 0.189760068260086 1 0.262487649917603 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188641 chr7:101188654 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_34332 0 0 0 0 1 exosome 1 0.500231643921104 1 0.999536712157792 hm5C_site_34145 DeepMRMD:1;iRNA_m5C:0.999536712157792 34146 chr7 100151739 100151739 1 + G A SKCM 100151721 + 100151701 100151741 41 TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCACGCTCGGAC TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCACGCTCGAAC < 41bp 1 0.0384890089586174 1 0.025151789188385 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100151721 chr7:100151739 synonymous SNV . 0 39 hm5C_associated_SNPs_34333 0 0 1 0 1 chromatin 1 0.500231643921087 1 0.999536712157826 hm5C_site_34146 DeepMRMD:1;iRNA_m5C:0.999536712157826 34147 chr14 104518379 104518379 1 + T G SKCM 104518381 + 104518361 104518401 41 GCAGAGGGAAGAACACCTTTCTCTACCAGCTCCACAAACTG GCAGAGGGAAGAACACCTGTCTCTACCAGCTCCACAAACTG < 41bp 1 0.470938527882358 1 0.775957405567169 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104518381 chr14:104518379 nonsynonymous SNV 0.966 0 19 hm5C_associated_SNPs_34334 0 0 0 0 1 nucleus 1 0.500231643921092 0.448085188865662 0.999536712157815 hm5C_site_34147 DeepMRMD:0.448085188865662;iRNA_m5C:0.999536712157815 34148 chr1 78001598 78001598 1 + C T SKCM 78001588 + 78001568 78001608 41 TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCG TCGGCAGACACCATGACCAACCGCCTTCTCTAAAGGAGCCG < 41bp 1 0.131026469506359 1 0.0748502314090729 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001588 chr1:78001598 stopgain 0.625 0 31 hm5C_associated_SNPs_34335 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34148 DeepMRMD:1;iRNA_m5C:0.999536712157815 34149 chr1 78001598 78001598 1 + C T SKCM 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCTAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC < 41bp 1 0.382861457391784 1 0.322085559368134 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001598 stopgain 0.625 0 7 hm5C_associated_SNPs_34336 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34149 DeepMRMD:1;iRNA_m5C:0.999536712157815 34150 chr7 142458477 142458477 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCC < 41bp 1 0.174885909750827 1 0.262619346380234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458477 stopgain 0.997 1 32 hm5C_associated_SNPs_34337 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34150 DeepMRMD:1;iRNA_m5C:0.999536712157815 34151 chr7 142458477 142458477 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAA < 41bp 1 0.13098846466837 1 0.1374531686306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458477 stopgain 0.997 1 28 hm5C_associated_SNPs_34338 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34151 DeepMRMD:1;iRNA_m5C:0.999536712157815 34152 chr7 142458477 142458477 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAAT < 41bp 1 0.148492513159211 1 0.100500404834747 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458477 stopgain 0.997 1 27 hm5C_associated_SNPs_34339 0 0 0 0 2 Cytosol 1 0.500231643922273 1 0.999536712155455 hm5C_site_34152 DeepMRMD:1;iRNA_m5C:0.999536712155455 34153 chr7 142458477 142458477 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAATT < 41bp 1 0.0204570600180675 1 0.0494898855686188 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458477 stopgain 0.997 1 26 hm5C_associated_SNPs_34340 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34153 DeepMRMD:1;iRNA_m5C:0.999536712157815 34154 chr7 142458477 142458477 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAATTC < 41bp 1 0.210732630180587 1 0.082306832075119 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458477 stopgain 0.997 1 25 hm5C_associated_SNPs_34341 0 0 0 0 2 Cytosol 1 0.500231643921302 1 0.999536712157396 hm5C_site_34154 DeepMRMD:1;iRNA_m5C:0.999536712157396 34155 chr7 142458477 142458477 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACTAGGTGTCCCTGAATTCTGG < 41bp 1 0.434710289813155 1 0.329152554273605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458477 stopgain 0.997 1 22 hm5C_associated_SNPs_34342 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34155 DeepMRMD:1;iRNA_m5C:0.999536712157815 34156 chr7 142458477 142458477 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACTAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.104187984766499 1 0.02646404504776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458477 stopgain 0.997 1 14 hm5C_associated_SNPs_34343 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34156 DeepMRMD:1;iRNA_m5C:0.999536712157815 34157 chr7 142458477 142458477 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCCCCTACTAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.291927075917926 1 0.0671525895595551 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458477 stopgain 0.997 1 13 hm5C_associated_SNPs_34344 0 0 0 0 2 Cytosol 1 0.50023164391137 1 0.999536712177261 hm5C_site_34157 DeepMRMD:1;iRNA_m5C:0.999536712177261 34158 chr7 142458477 142458477 1 + C T SKCM 142458486 + 142458466 142458506 41 CTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTTC CTGTCCCCTACTAGGTGTCCCTGAATTCTGGCTACCACTTC < 41bp 1 0.686070601172392 1 0.442617535591125 experiment 0.627858797655215 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458486 chr7:142458477 stopgain 0.997 1 12 hm5C_associated_SNPs_34345 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34158 DeepMRMD:1;iRNA_m5C:0.999536712157815 34159 chr7 142458477 142458477 1 + C T SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC TAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0709291301110893 1 0.0273494720458984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458477 stopgain 0.997 1 1 hm5C_associated_SNPs_34347 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34159 DeepMRMD:1;iRNA_m5C:0.999536712157815 34160 chr10 101515430 101515430 1 + C T SKCM 101515429 + 101515409 101515449 41 ACTTTCTTGCTCAGAATATTCCCTAAAGGTAACAGATGTGA ACTTTCTTGCTCAGAATATTCTCTAAAGGTAACAGATGTGA < 41bp 1 0.692140085717237 1 0.533868074417114 experiment 0.615719828565525 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515429 chr10:101515430 synonymous SNV . 0 22 hm5C_associated_SNPs_34348 0 0 1 2 1 Ribosome 1 0.500231643921431 0.932263851165772 0.999536712157138 hm5C_site_34160 DeepMRMD:0.932263851165772;iRNA_m5C:0.999536712157138 34161 chr17 79671701 79671701 1 + G A SKCM 79671721 + 79671701 79671741 41 GGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC AGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC < 41bp 1 0.0995046977920496 1 0.0591919422149658 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671721 chr17:79671701 nonsynonymous SNV 0.015 0 1 hm5C_associated_SNPs_34349 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34161 DeepMRMD:1;iRNA_m5C:0.999536712157815 34162 chr16 55523598 55523598 1 + C T SKCM 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC AAGGTGCCTCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC < 41bp 1 0.0407168750689326 1 0.454958081245422 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523598 nonsynonymous SNV 0.991 2 9 hm5C_associated_SNPs_34350 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34162 DeepMRMD:1;iRNA_m5C:0.999536712157815 34163 chr16 2732752 2732752 1 + C T SKCM 2732745 + 2732725 2732765 41 GGCAGACCCTGTGCCGGGACCCGAAATCCTTCCTGTACCGC GGCAGACCCTGTGCCGGGACCCGAAATTCTTCCTGTACCGC < 41bp 1 0.492117046351303 1 0.29377555847168 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2732745 chr16:2732752 nonsynonymous SNV 0.985 4 28 hm5C_associated_SNPs_34351 0 0 1 0 1 Ribosome 1 0.500231643915202 1 0.999536712169597 hm5C_site_34163 DeepMRMD:1;iRNA_m5C:0.999536712169597 34164 chr10 101715522 101715522 1 + G A SKCM 101715533 - 101715513 101715553 41 GAGAAGAGCTTGGCAGGGCCCGGCACAGAGCCAGATAAAAT GAGAAGAGCTTGGCAGGGCCCGGCACAGAGCTAGATAAAAT < 41bp 1 0.600139758996489 1 0.715655863285065 experiment 0.799720482007022 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNMBP ENSG00000107554 CDS Human protein_coding chr10:101715533 chr10:101715522 nonsynonymous SNV 0.168 1 32 hm5C_associated_SNPs_34352 0 0 0 0 0 Nucleus 1 0.500231643258031 0.56868827342987 0.999536713483938 hm5C_site_34164 DeepMRMD:0.56868827342987;iRNA_m5C:0.999536713483938 34165 chr2 178080267 178080267 1 + G A SKCM 178080269 + 178080249 178080289 41 ATTGGTTCTTTCTCTCAGGGCCATGATCCAAAGGAACCAGA ATTGGTTCTTTCTCTCAGAGCCATGATCCAAAGGAACCAGA < 41bp 1 0.0913469892892785 1 0.107487440109253 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178080269 chr2:178080267 nonsynonymous SNV 0.973 2 19 hm5C_associated_SNPs_34353 0 0 1 0 1 Cytosol 1 0.500231734594045 1 0.99953653081191 hm5C_site_34165 DeepMRMD:1;iRNA_m5C:0.99953653081191 34166 chr7 101188655 101188655 1 + G T SKCM 101188639 + 101188619 101188659 41 GGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAG GGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGTAGAG < 41bp 1 0.283919311451889 1 0.425828605890274 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188639 chr7:101188655 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_34354 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34166 DeepMRMD:1;iRNA_m5C:0.999536712157815 34167 chr7 101188655 101188655 1 + G T SKCM 101188640 + 101188620 101188660 41 GCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGA GCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGTAGAGA < 41bp 1 0.304317599208538 1 0.208202064037323 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188640 chr7:101188655 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_34355 0 0 0 0 1 exosome 1 0.500231643921119 1 0.999536712157763 hm5C_site_34167 DeepMRMD:1;iRNA_m5C:0.999536712157763 34168 chr7 101188655 101188655 1 + G T SKCM 101188641 + 101188621 101188661 41 CTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGAT CTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGTAGAGAT < 41bp 1 0.227917007822307 1 0.252063363790512 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188641 chr7:101188655 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_34356 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34168 DeepMRMD:1;iRNA_m5C:0.999536712157815 34169 chr19 18232718 18232718 1 + C T SKCM 18232699 + 18232679 18232719 41 TAGTCCTCGGAATTTCTCGGCTGCCTCTGCCCTAAATTTCC TAGTCCTCGGAATTTCTCGGCTGCCTCTGCCCTAAATTTTC < 41bp 1 0.078725691729842 1 0.109431982040405 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAST3 ENSG00000099308 CDS Human protein_coding chr19:18232699 chr19:18232718 synonymous SNV . 0 40 hm5C_associated_SNPs_34357 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34169 DeepMRMD:1;iRNA_m5C:0.999536712157815 34170 chr14 105352930 105352930 1 + C G SKCM 105352950 + 105352930 105352970 41 CACCAAGGGCCCCCGGGGAGCCAACTCCCGCCTCTTTCTTC GACCAAGGGCCCCCGGGGAGCCAACTCCCGCCTCTTTCTTC < 41bp 1 0.058634128292996 1 0.0736560523509979 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105352950 chr14:105352930 stopgain 0.012 0 1 hm5C_associated_SNPs_34358 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34170 DeepMRMD:1;iRNA_m5C:0.999536712157815 34171 chr1 233482338 233482338 1 + C T SKCM 233482335 + 233482315 233482355 41 GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA GGCCCCCGAAGTGATCAAGTCTTTCTTGTTTTCTAAGGGAA < 41bp 1 0.0645721360128823 1 0.0497785806655884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482335 chr1:233482338 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_34359 0 0 1 0 1 unknown 1 0.500231643920872 1 0.999536712158257 hm5C_site_34171 DeepMRMD:1;iRNA_m5C:0.999536712158257 34172 chr17 27014432 27014432 1 + G A SKCM 27014434 + 27014414 27014454 41 TGCCCACCCTTACAGCCAGGCCTTGATCCAGTATGTTTGTG TGCCCACCCTTACAGCCAAGCCTTGATCCAGTATGTTTGTG < 41bp 1 0.0274437467017678 1 0.0362472534179688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27014434 chr17:27014432 synonymous SNV . 0 19 hm5C_associated_SNPs_34360 0 0 1 0 1 Cytosol 1 0.500232262335045 1 0.999535475329909 hm5C_site_34172 DeepMRMD:1;iRNA_m5C:0.999535475329909 34173 chr2 201485964 201485964 1 + G A SKCM 201485944 + 201485924 201485964 41 CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGCGACAG CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGCGACAA < 41bp 1 0.435731106267536 1 0.184911340475082 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201485944 chr2:201485964 nonsynonymous SNV 0.199 0 41 hm5C_associated_SNPs_34361 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164656399 1 0.999536706872019 hm5C_site_34173 DeepMRMD:1;iRNA_m5C:0.999536706872019 34174 chr11 44129493 44129493 1 + C T SKCM 44129509 + 44129489 44129529 41 CCATCCCAGAGCGGGGGGATCTCAGTTGCAGAATGCACACG CCATTCCAGAGCGGGGGGATCTCAGTTGCAGAATGCACACG < 41bp 1 0.687312867697492 1 0.533797860145569 experiment 0.625374264605015 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129509 chr11:44129493 synonymous SNV . 0 5 hm5C_associated_SNPs_34362 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 0.932404279708862 0.999536712157815 hm5C_site_34174 DeepMRMD:0.932404279708862;iRNA_m5C:0.999536712157815 34175 chr10 80968130 80968130 1 + C T SKCM 80968135 + 80968115 80968155 41 TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGCGGAGAC TCCACAATGCCGCCATGGAGCTGCTGGACTGGTGCGGAGAC < 41bp 1 0.344825086089632 1 0.113442689180374 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:80968135 chr10:80968130 nonsynonymous SNV 0.986 3 16 hm5C_associated_SNPs_34363 0 0 1 0 2 Nucleus 1 0.500231579837248 1 0.999536840325504 hm5C_site_34175 DeepMRMD:1;iRNA_m5C:0.999536840325504 34176 chr14 24779948 24779948 1 + C T SKCM 24779945 + 24779925 24779965 41 TCGCGGGCCACAGGCACAGCCTTCCTGCTGCTGGCGGCGCT TCGCGGGCCACAGGCACAGCCTTTCTGCTGCTGGCGGCGCT < 41bp 1 0.0867903170767121 1 0.136210024356842 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTB4R2 ENSG00000213906;ENSG00000272658 CDS Human other chr14:24779945 chr14:24779948 synonymous SNV . 0 24 hm5C_associated_SNPs_34364 0 0 1 0 1 chromatin 1 0.500230361992976 1 0.999539276014049 hm5C_site_34176 DeepMRMD:1;iRNA_m5C:0.999539276014049 34177 chr10 80968129 80968129 1 + A T SKCM 80968135 + 80968115 80968155 41 TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGCGGAGAC TCCACAATGCCGCCTCGGAGCTGCTGGACTGGTGCGGAGAC < 41bp 1 0.343595402954229 1 0.121447950601578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:80968135 chr10:80968129 nonsynonymous SNV 0.984 2 15 hm5C_associated_SNPs_34365 0 0 1 0 2 Nucleus 1 0.500231585639462 1 0.999536828721076 hm5C_site_34177 DeepMRMD:1;iRNA_m5C:0.999536828721076 34178 chr11 61488210 61488210 1 + C T SKCM 61488204 + 61488184 61488224 41 GGTCTATAACCCGCACGAGGCCTGCTCCCTGAACCTGGTGG GGTCTATAACCCGCACGAGGCCTGCTTCCTGAACCTGGTGG < 41bp 1 0.0661865197039449 1 0.0337595045566559 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61488204 chr11:61488210 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_34366 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921061 1 0.999536712157878 hm5C_site_34178 DeepMRMD:1;iRNA_m5C:0.999536712157878 34179 chr7 92987678 92987678 1 + C T SKCM 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATTCCATATCAATAAGAAAGCAAGACAAAA < 41bp 1 0.53164437209305 1 0.387299180030823 experiment 0.936711255813899 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987678 nonsynonymous SNV 0.999 2 14 hm5C_associated_SNPs_34367 0 0 1 0 1 Cytosol 1 0.500231643931599 1 0.999536712136801 hm5C_site_34179 DeepMRMD:1;iRNA_m5C:0.999536712136801 34180 chr1 40704981 40704981 1 + C T SKCM 40704975 + 40704955 40704995 41 AATAAGTTTTAAAACCAGAGCTGAGGCCCTCCATATGTGTG AATAAGTTTTAAAACCAGAGCTGAGGTCCTCCATATGTGTG < 41bp 1 0.355125158709573 1 0.30416277050972 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RLF ENSG00000117000 CDS Human protein_coding chr1:40704975 chr1:40704981 nonsynonymous SNV 0.984 4 27 hm5C_associated_SNPs_34369 0 0 1 0 0 Nucleus 1 0.50023164314231 1 0.999536713715381 hm5C_site_34180 DeepMRMD:1;iRNA_m5C:0.999536713715381 34181 chr1 206902119 206902119 1 + C T SKCM 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCTGCACATCGTACGGATCGTGGATGTGTACGAGAATCT < 41bp 1 0.490777016380997 1 0.293826222419739 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902119 nonsynonymous SNV 0.860 1 5 hm5C_associated_SNPs_34371 0 0 1 0 2 Ribosome 1 0.500234793914008 1 0.999530412171984 hm5C_site_34181 DeepMRMD:1;iRNA_m5C:0.999530412171984 34182 chr19 35741251 35741251 1 + A G SKCM 35741270 + 35741250 35741290 41 AACCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCT AGCCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCT < 41bp 1 0.107948381042895 1 0.0160469710826874 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741270 chr19:35741251 nonsynonymous SNV 0.583 0 2 hm5C_associated_SNPs_34373 0 0 1 0 2 chromatin 1 0.500231642971155 1 0.999536714057689 hm5C_site_34182 DeepMRMD:1;iRNA_m5C:0.999536714057689 34183 chr14 105175702 105175702 1 + C T SKCM 105175682 + 105175662 105175702 41 CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTT < 41bp 1 0.461138607712066 1 0.812896728515625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105175682 chr14:105175702 synonymous SNV . 0 41 hm5C_associated_SNPs_34376 0 0 1 2 2 Cytosol 1 0.500231643921092 0.37420654296875 0.999536712157815 hm5C_site_34183 DeepMRMD:0.37420654296875;iRNA_m5C:0.999536712157815 34184 chr2 74154162 74154162 1 + C T SKCM 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTTCATCGAA < 41bp 1 0.660392244147249 1 0.245358109474182 experiment 0.679215511705502 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154162 nonsynonymous SNV 0.990 5 34 hm5C_associated_SNPs_34377 0 0 1 1 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_34184 DeepMRMD:1;iRNA_m5C:0.999536712157816 34185 chr1 201981877 201981877 1 + C T SKCM 201981858 + 201981838 201981878 41 CTGTGGCGCAGGAGCCCCCTCCCCTGGCAGCTCTGACGTCT CTGTGGCGCAGGAGCCCCCTCCCCTGGCAGCTCTGACGTTT < 41bp 1 0.361889672828123 1 0.448528081178665 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ELF3 ENSG00000163435 CDS Human protein_coding chr1:201981858 chr1:201981877 synonymous SNV . 0 40 hm5C_associated_SNPs_34380 0 0 0 0 1 Endoplasmic reticulum 1 0.50023053609683 1 0.99953892780634 hm5C_site_34185 DeepMRMD:1;iRNA_m5C:0.99953892780634 34186 chr15 65931956 65931956 1 + G A SKCM 65931959 + 65931939 65931979 41 TCCTTGCTGACCCGAGGGAGCAGCTCGACCTCTCTGCACAA TCCTTGCTGACCCGAGGAAGCAGCTCGACCTCTCTGCACAA < 41bp 1 0.609649891751036 1 0.588404417037964 experiment 0.780700216497928 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65931959 chr15:65931956 synonymous SNV . 0 18 hm5C_associated_SNPs_34383 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643520798 0.823191165924072 0.999536712958404 hm5C_site_34186 DeepMRMD:0.823191165924072;iRNA_m5C:0.999536712958404 34187 chr15 73468837 73468837 1 + C T SKCM 73468840 + 73468820 73468860 41 GACTGGAAAACCAACTCCAACTGTGAAGTGGGTCAAAAATG GACTGGAAAACCAACTCTAACTGTGAAGTGGGTCAAAAATG < 41bp 1 0.195062845869618 1 0.203429788351059 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NEO1 ENSG00000067141 CDS Human protein_coding chr15:73468840 chr15:73468837 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_34384 0 0 1 0 2 Ribosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_34187 DeepMRMD:1;iRNA_m5C:0.999536712157806 34188 chr17 30692381 30692381 1 + C T SKCM 30692372 + 30692352 30692392 41 TGCCCCCACCTGTTCCACGTCCTGGAATTCCTCCAATGACT TGCCCCCACCTGTTCCACGTCCTGGAATTTCTCCAATGACT < 41bp 1 0.207459694020206 1 0.449171423912048 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692372 chr17:30692381 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_34385 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34188 DeepMRMD:1;iRNA_m5C:0.999536712157815 34189 chr8 48641592 48641592 1 + T C SKCM 48641587 + 48641567 48641607 41 CCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA CCTGGACTGCCGCTCAAGACCGCAGCGCAGAGTGAAGGTCA < 41bp 1 0.631252814907715 1 0.367758333683014 experiment 0.737494370184569 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641587 chr8:48641592 nonsynonymous SNV 0.007 3 26 hm5C_associated_SNPs_34386 0 0 1 0 3 Ribosome 1 0.500221755052198 1 0.999556489895604 hm5C_site_34189 DeepMRMD:1;iRNA_m5C:0.999556489895604 34190 chr19 11134211 11134211 1 + G A SKCM 11134199 + 11134179 11134219 41 CTTGGGGGCTTCCAGGTGGACCTGAATGAGGAGGAAACCAT CTTGGGGGCTTCCAGGTGGACCTGAATGAGGAAGAAACCAT < 41bp 1 0.26773160590423 1 0.0832529664039612 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11134199 chr19:11134211 synonymous SNV . 0 33 hm5C_associated_SNPs_34387 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34190 DeepMRMD:1;iRNA_m5C:0.999536712157815 34191 chr5 176522661 176522661 1 + C T SKCM 176522651 + 176522631 176522671 41 TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGG TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTTCCAGTCCTGG < 41bp 1 0.138379997837695 1 0.0603960454463959 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522651 chr5:176522661 synonymous SNV . 0 31 hm5C_associated_SNPs_34388 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920883 1 0.999536712158234 hm5C_site_34191 DeepMRMD:1;iRNA_m5C:0.999536712158234 34192 chr5 176522661 176522661 1 + C T SKCM 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCCGCTCTCCTTTCCAGTCCTGGTCTCCT < 41bp 1 0.0654678893676415 1 0.188446551561356 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522661 synonymous SNV . 0 25 hm5C_associated_SNPs_34389 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164265217 1 0.99953671469566 hm5C_site_34192 DeepMRMD:1;iRNA_m5C:0.99953671469566 34193 chr13 99042343 99042343 1 + C T SKCM 99042342 + 99042322 99042362 41 AAACCAAAGCCCAAGCCCGTCCTCTTTAGCCGGGGGTCATC AAACCAAAGCCCAAGCCCGTCTTCTTTAGCCGGGGGTCATC < 41bp 1 0.0960227136514423 1 0.0511383712291718 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99042342 chr13:99042343 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_34390 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34193 DeepMRMD:1;iRNA_m5C:0.999536712157815 34194 chr2 187519428 187519428 1 + G A SKCM 187519432 + 187519412 187519452 41 AAGGAGTACTTCCCAGGAAACTTAGTAAGTGTTCTATGAAA AAGGAGTACTTCCCAGAAAACTTAGTAAGTGTTCTATGAAA < 41bp 1 0.169154039094117 1 0.0978939533233643 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGAV ENSG00000138448 CDS Human protein_coding chr2:187519432 chr2:187519428 synonymous SNV . 0 17 hm5C_associated_SNPs_34391 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34194 DeepMRMD:1;iRNA_m5C:0.999536712157815 34195 chr5 176522662 176522662 1 + C T SKCM 176522651 + 176522631 176522671 41 TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGG TCCTCGGAGCAGTGAGGGGCCGCTCTCCTTCTCAGTCCTGG < 41bp 1 0.188647816611258 1 0.0846938490867615 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522651 chr5:176522662 nonsynonymous SNV 0.968 3 32 hm5C_associated_SNPs_34392 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643892175 1 0.99953671221565 hm5C_site_34195 DeepMRMD:1;iRNA_m5C:0.99953671221565 34196 chr5 176522662 176522662 1 + C T SKCM 176522657 + 176522637 176522677 41 GAGCAGTGAGGGGCCGCTCTCCTTCCCAGTCCTGGTCTCCT GAGCAGTGAGGGGCCGCTCTCCTTCTCAGTCCTGGTCTCCT < 41bp 1 0.0608211114259204 1 0.0924152135848999 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522657 chr5:176522662 nonsynonymous SNV 0.968 3 26 hm5C_associated_SNPs_34393 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921033 1 0.999536712157934 hm5C_site_34196 DeepMRMD:1;iRNA_m5C:0.999536712157934 34197 chr2 187519427 187519427 1 + G A SKCM 187519432 + 187519412 187519452 41 AAGGAGTACTTCCCAGGAAACTTAGTAAGTGTTCTATGAAA AAGGAGTACTTCCCAAGAAACTTAGTAAGTGTTCTATGAAA < 41bp 1 0.141414300201 1 0.0814126133918762 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGAV ENSG00000138448 CDS Human protein_coding chr2:187519432 chr2:187519427 nonsynonymous SNV 0.915 0 16 hm5C_associated_SNPs_34394 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921945 1 0.99953671215611 hm5C_site_34197 DeepMRMD:1;iRNA_m5C:0.99953671215611 34198 chr17 48746561 48746561 1 + G A SKCM 48746567 + 48746547 48746587 41 CCTGTGGGCTGTGGGAAGTCCTCCCTGGTGTCTGCCCTGCT CCTGTGGGCTGTGGAAAGTCCTCCCTGGTGTCTGCCCTGCT < 41bp 1 0.358954233819815 1 0.512508034706116 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48746567 chr17:48746561 synonymous SNV . 0 15 hm5C_associated_SNPs_34395 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 0.974983930587768 0.999536712157814 hm5C_site_34198 DeepMRMD:0.974983930587768;iRNA_m5C:0.999536712157814 34199 chr19 10812143 10812143 1 + G A SKCM 10812147 + 10812127 10812167 41 GACAGTCAAGATGGCGGGAGCAGCTACCCAGGCTTCCCTGG GACAGTCAAGATGGCGAGAGCAGCTACCCAGGCTTCCCTGG < 41bp 1 0.609134584593583 1 0.621374070644379 experiment 0.781730830812834 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812147 chr19:10812143 nonsynonymous SNV 0.746 1 17 hm5C_associated_SNPs_34396 0 0 1 0 0 Ribosome 1 0.500231643921092 0.757251858711242 0.999536712157815 hm5C_site_34199 DeepMRMD:0.757251858711242;iRNA_m5C:0.999536712157815 34200 chr19 3434310 3434310 1 + C T SKCM 3434306 + 3434286 3434326 41 ACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGG ACTGGAACAGGACCCAACTTCTCCTTGGGGGAGCTGCAGGG < 41bp 1 0.49235454436952 1 0.931918621063232 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFIC ENSG00000141905 CDS Human protein_coding chr19:3434306 chr19:3434310 synonymous SNV . 0 25 hm5C_associated_SNPs_34397 0 0 1 0 2 Ribosome 1 0.500231643921092 0.136162757873536 0.999536712157816 hm5C_site_34200 DeepMRMD:0.136162757873536;iRNA_m5C:0.999536712157816 34201 chr20 35219438 35219438 1 + C T SKCM 35219435 + 35219415 35219455 41 AAGGCCTCAGATGTGGCCCTCCCCCGTGGCAGCAGCCCCTC AAGGCCTCAGATGTGGCCCTCCCTCGTGGCAGCAGCCCCTC < 41bp 1 0.0883829166043297 1 0.041645735502243 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGIF2 ENSG00000118707 CDS Human protein_coding chr20:35219435 chr20:35219438 synonymous SNV . 0 24 hm5C_associated_SNPs_34398 0 0 1 0 0 Nucleus 1 0.50023161599208 1 0.999536768015839 hm5C_site_34201 DeepMRMD:1;iRNA_m5C:0.999536768015839 34202 chr20 35219438 35219438 1 + C T SKCM 35219436 + 35219416 35219456 41 AGGCCTCAGATGTGGCCCTCCCCCGTGGCAGCAGCCCCTCA AGGCCTCAGATGTGGCCCTCCCTCGTGGCAGCAGCCCCTCA < 41bp 1 0.150055209684471 1 0.542284488677979 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGIF2 ENSG00000118707 CDS Human protein_coding chr20:35219436 chr20:35219438 synonymous SNV . 0 23 hm5C_associated_SNPs_34399 0 0 1 0 0 Nucleus 1 0.500282176360743 0.915431022644042 0.999435647278514 hm5C_site_34202 DeepMRMD:0.915431022644042;iRNA_m5C:0.999435647278514 34203 chr9 131198057 131198057 1 + C T SKCM 131198051 + 131198031 131198071 41 GCTCAGTGACACGGAGACATCCTCTCCATGGGATGATGACA GCTCAGTGACACGGAGACATCCTCTCTATGGGATGATGACA < 41bp 1 0.0583750848498378 1 0.0455323457717896 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131198051 chr9:131198057 nonsynonymous SNV 0.895 0 27 hm5C_associated_SNPs_34400 0 0 1 0 0 chromatin 1 0.500231644061813 1 0.999536711876373 hm5C_site_34203 DeepMRMD:1;iRNA_m5C:0.999536711876373 34204 chr9 131198057 131198057 1 + C T SKCM 131198054 + 131198034 131198074 41 CAGTGACACGGAGACATCCTCTCCATGGGATGATGACAGCG CAGTGACACGGAGACATCCTCTCTATGGGATGATGACAGCG < 41bp 1 0.47351918677283 1 0.844564437866211 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131198054 chr9:131198057 nonsynonymous SNV 0.895 0 24 hm5C_associated_SNPs_34401 0 0 1 0 0 chromatin 1 0.500231624646061 0.310871124267578 0.999536750707878 hm5C_site_34204 DeepMRMD:0.310871124267578;iRNA_m5C:0.999536750707878 34205 chr20 35219439 35219439 1 + C T SKCM 35219435 + 35219415 35219455 41 AAGGCCTCAGATGTGGCCCTCCCCCGTGGCAGCAGCCCCTC AAGGCCTCAGATGTGGCCCTCCCCTGTGGCAGCAGCCCCTC < 41bp 1 0.253124835539143 1 0.0508418083190918 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGIF2 ENSG00000118707 CDS Human protein_coding chr20:35219435 chr20:35219439 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_34402 0 0 1 0 0 Nucleus 1 0.50023164392099 1 0.999536712158021 hm5C_site_34205 DeepMRMD:1;iRNA_m5C:0.999536712158021 34206 chr20 35219439 35219439 1 + C T SKCM 35219436 + 35219416 35219456 41 AGGCCTCAGATGTGGCCCTCCCCCGTGGCAGCAGCCCCTCA AGGCCTCAGATGTGGCCCTCCCCTGTGGCAGCAGCCCCTCA < 41bp 1 0.178963035038236 1 0.385650455951691 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGIF2 ENSG00000118707 CDS Human protein_coding chr20:35219436 chr20:35219439 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_34403 0 0 1 0 0 Nucleus 1 0.500231631607056 1 0.999536736785888 hm5C_site_34206 DeepMRMD:1;iRNA_m5C:0.999536736785888 34207 chr10 129141980 129141980 1 + C T SKCM 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTT < 41bp 1 0.00880210691065074 1 0.0495544373989105 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141980 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_34404 0 0 1 0 2 Nucleus 1 0.500231675781395 1 0.99953664843721 hm5C_site_34207 DeepMRMD:1;iRNA_m5C:0.99953664843721 34208 chr10 129141980 129141980 1 + C T SKCM 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTTA < 41bp 1 0.234945016743018 1 0.285791456699371 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141980 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_34405 0 0 1 0 2 Nucleus 1 0.5002316439211 1 0.999536712157799 hm5C_site_34208 DeepMRMD:1;iRNA_m5C:0.999536712157799 34209 chr10 129141980 129141980 1 + C T SKCM 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTTAAGT < 41bp 1 0.0784518884441964 1 0.308132171630859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141980 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_34406 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_34209 DeepMRMD:1;iRNA_m5C:0.999536712157814 34210 chr10 129141980 129141980 1 + C T SKCM 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTTAAGTGCC < 41bp 1 0.476295085556642 1 0.753361701965332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141980 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_34407 0 0 1 0 2 Nucleus 1 0.500231643921039 0.493276596069336 0.999536712157922 hm5C_site_34210 DeepMRMD:0.493276596069336;iRNA_m5C:0.999536712157922 34211 chr10 129141980 129141980 1 + C T SKCM 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGGAGAATTTTTTAAGTGCCAAGAGAGCCAAAATCCTTA < 41bp 1 0.0423535650716009 1 0.285904824733734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129141980 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_34408 0 0 1 0 2 Nucleus 1 0.500231648475301 1 0.999536703049399 hm5C_site_34211 DeepMRMD:1;iRNA_m5C:0.999536703049399 34212 chr10 129141980 129141980 1 + C T SKCM 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGGAGAATTTTTTAAGTGCCAAGAGAGCCAAAATCCTTAA < 41bp 1 0.460339554776971 1 0.513733863830566 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129141980 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_34409 0 0 1 0 2 Nucleus 1 0.500231575123895 0.972532272338868 0.999536849752209 hm5C_site_34212 DeepMRMD:0.972532272338868;iRNA_m5C:0.999536849752209 34213 chr10 129141980 129141980 1 + C T SKCM 129141995 + 129141975 129142015 41 TTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAG TTTTTTAAGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAG < 41bp 1 0.103612328273728 1 0.336726903915405 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141995 chr10:129141980 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_34410 0 0 1 0 2 Nucleus 1 0.500231643894349 1 0.999536712211302 hm5C_site_34213 DeepMRMD:1;iRNA_m5C:0.999536712211302 34214 chr19 42364908 42364908 1 + C T SKCM 42364907 + 42364887 42364927 41 GTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTGAGTTTGGGG GTCAGAGCTCTGGCAGCCTTCTTCAAAAAGTGAGTTTGGGG < 41bp 1 0.449232997236744 1 0.846163511276245 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42364907 chr19:42364908 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_34411 0 0 1 0 2 Cytosol 1 0.500231643921092 0.30767297744751 0.999536712157815 hm5C_site_34214 DeepMRMD:0.30767297744751;iRNA_m5C:0.999536712157815 34215 chr1 214820055 214820055 1 + G A SKCM 214820060 + 214820040 214820080 41 TGACCCAAAGTCTGAGAGGTCTGGAATTAGATGTTGTTACT TGACCCAAAGTCTGAAAGGTCTGGAATTAGATGTTGTTACT < 41bp 1 0.63914838040621 1 0.469335645437241 experiment 0.72170323918758 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214820060 chr1:214820055 nonsynonymous SNV 0.045 0 16 hm5C_associated_SNPs_34412 0 0 1 0 0 Nucleus 1 0.500231643916719 1 0.999536712166563 hm5C_site_34215 DeepMRMD:1;iRNA_m5C:0.999536712166563 34216 chr19 4442295 4442295 1 + G A SKCM 4442277 + 4442257 4442297 41 ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGA ATGGACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAAGA < 41bp 1 0.641053969491485 1 0.222248464822769 experiment 0.717892061017031 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442277 chr19:4442295 synonymous SNV . 0 39 hm5C_associated_SNPs_34413 0 0 1 0 2 Nucleus 1 0.500231643723359 1 0.999536712553282 hm5C_site_34216 DeepMRMD:1;iRNA_m5C:0.999536712553282 34217 chr5 33463925 33463925 1 + C T SKCM 33463905 + 33463885 33463925 41 AATGGTAGTTCCAGTGGGACCAACCTGTGATGAATATGCCC AATGGTAGTTCCAGTGGGACCAACCTGTGATGAATATGCCT < 41bp 1 0.279796820893332 1 0.568742036819458 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33463905 chr5:33463925 stopgain 1.000 1 41 hm5C_associated_SNPs_34415 0 0 1 0 2 Nucleus 1 0.500231643921092 0.862515926361084 0.999536712157815 hm5C_site_34217 DeepMRMD:0.862515926361084;iRNA_m5C:0.999536712157815 34218 chr12 57600317 57600317 1 + C T SKCM 57600323 + 57600303 57600343 41 AGCCTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC AGCCTGTTCCCCGGTCACCCCCATTCGGCTTACGAGCAGGC < 41bp 1 0.015775631628368 1 0.141361892223358 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600323 chr12:57600317 synonymous SNV . 0 15 hm5C_associated_SNPs_34416 0 0 0 0 1 Exosome 1 0.500229464783259 1 0.999541070433482 hm5C_site_34218 DeepMRMD:1;iRNA_m5C:0.999541070433482 34219 chr17 7476169 7476169 1 + A T SKCM 7476180 + 7476160 7476200 41 ATGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA ATGTCTGCGTGCCAGGATTCCCGGTAAGAAAGGCATTTGCA < 41bp 1 0.374378481521248 1 0.146753877401352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476180 chr17:7476169 nonsynonymous SNV 0.996 1 10 hm5C_associated_SNPs_34417 0 0 1 0 1 Cytosol 1 0.500224771613447 1 0.999550456773107 hm5C_site_34219 DeepMRMD:1;iRNA_m5C:0.999550456773107 34220 chr12 57600318 57600318 1 + C T SKCM 57600323 + 57600303 57600343 41 AGCCTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC AGCCTGTTCCCCGGCTACCCCCATTCGGCTTACGAGCAGGC < 41bp 1 0.0165542681828345 1 0.206179916858673 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600323 chr12:57600318 nonsynonymous SNV 0.737 1 16 hm5C_associated_SNPs_34419 0 0 0 0 1 Exosome 1 0.500231643803049 1 0.999536712393902 hm5C_site_34220 DeepMRMD:1;iRNA_m5C:0.999536712393902 34221 chr16 70163017 70163017 1 + C T SKCM 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTTGCCCTGGCAAGTGCTGCCTTCCAAAATGGTGAGCAGGT < 41bp 1 0.0614025701454781 1 0.0637567639350891 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70163017 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_34420 0 0 0 0 1 Nucleus 1 0.500231639107902 1 0.999536721784196 hm5C_site_34221 DeepMRMD:1;iRNA_m5C:0.999536721784196 34222 chr8 26227663 26227663 1 + G A SKCM 26227656 + 26227636 26227676 41 GTCTATTTTCACAGTGTTGTCATGACTGGATCTTACAATAA GTCTATTTTCACAGTGTTGTCATGACTAGATCTTACAATAA < 41bp 1 0.443778879160218 1 0.175061166286469 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26227656 chr8:26227663 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_34421 0 0 1 0 1 Cytosol 1 0.500231522332278 1 0.999536955335443 hm5C_site_34222 DeepMRMD:1;iRNA_m5C:0.999536955335443 34223 chr5 147498040 147498040 1 + G C SKCM 147498044 + 147498024 147498064 41 CAAATGAAAAATGGAAGACTCAGCTGTACTCGGGAGAGTGA CAAATGAAAAATGGAACACTCAGCTGTACTCGGGAGAGTGA < 41bp 1 0.429307329834696 1 0.513646900653839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498044 chr5:147498040 nonsynonymous SNV 0.963 0 17 hm5C_associated_SNPs_34422 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 0.972706198692322 0.999536712157815 hm5C_site_34223 DeepMRMD:0.972706198692322;iRNA_m5C:0.999536712157815 34224 chr12 120875936 120875936 1 + G A SKCM 120875925 + 120875905 120875945 41 GGCGCTGCGGCAGTCCAGATCAAAAATGGCGGTAGTTGGTG GGCGCTGCGGCAGTCCAGATCAAAAATGGCGATAGTTGGTG < 41bp 1 0.698775397794722 1 0.234906166791916 experiment 0.602449204410556 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COX6A1 ENSG00000111775 CDS Human protein_coding chr12:120875925 chr12:120875936 nonsynonymous SNV 0.012 0 32 hm5C_associated_SNPs_34423 0 0 1 0 1 Ribosome 1 0.500231643921693 1 0.999536712156615 hm5C_site_34224 DeepMRMD:1;iRNA_m5C:0.999536712156615 34225 chr11 66258775 66258775 1 + G C SKCM 66258782 + 66258762 66258802 41 AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCGGGG AGCTATGAATTCCCGGGAAGCCCTTTCCAGGTGACCCGGGG < 41bp 1 0.123233760585334 1 0.115684568881989 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258782 chr11:66258775 nonsynonymous SNV 0.939 0 14 hm5C_associated_SNPs_34424 0 0 1 0 2 Nucleus 1 0.500231643921122 1 0.999536712157755 hm5C_site_34225 DeepMRMD:1;iRNA_m5C:0.999536712157755 34226 chr6 108497842 108497842 1 + C T SKCM 108497862 + 108497842 108497882 41 CCGCGGTCACGCAGCTGGAGCCGCACGGCCTGGAGCTGGCC TCGCGGTCACGCAGCTGGAGCCGCACGGCCTGGAGCTGGCC < 41bp 1 0.548132632015343 1 0.0986999273300171 experiment 0.903734735969313 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108497862 chr6:108497842 nonsynonymous SNV 0.962 1 1 hm5C_associated_SNPs_34425 0 0 0 0 0 exosome 1 0.500231641132659 1 0.999536717734682 hm5C_site_34226 DeepMRMD:1;iRNA_m5C:0.999536717734682 34227 chr17 77758698 77758698 1 + T G SKCM 77758688 + 77758668 77758708 41 CCGCCCAGCACTGGACAGAACCCGTCAGTGTCCGTTCAGAC CCGCCCAGCACTGGACAGAACCCGTCAGTGGCCGTTCAGAC < 41bp 1 0.253672872896169 1 0.0630244612693787 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77758688 chr17:77758698 nonsynonymous SNV 0.011 0 31 hm5C_associated_SNPs_34426 0 0 1 0 0 chromatin 1 0.500231643921237 1 0.999536712157525 hm5C_site_34227 DeepMRMD:1;iRNA_m5C:0.999536712157525 34228 chr17 77758698 77758698 1 + T G SKCM 77758689 + 77758669 77758709 41 CGCCCAGCACTGGACAGAACCCGTCAGTGTCCGTTCAGACC CGCCCAGCACTGGACAGAACCCGTCAGTGGCCGTTCAGACC < 41bp 1 0.0798842845954472 1 0.289406806230545 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77758689 chr17:77758698 nonsynonymous SNV 0.011 0 30 hm5C_associated_SNPs_34427 0 0 1 0 0 chromatin 1 0.500231691506224 1 0.999536616987553 hm5C_site_34228 DeepMRMD:1;iRNA_m5C:0.999536616987553 34229 chr16 75682397 75682397 1 + C T SKCM 75682389 + 75682369 75682409 41 CTGGGGGACGCGCCGGTGAGCCCCTCCTCCCAGAAGCTCAA CTGGGGGACGCGCCGGTGAGCCCCTCCTTCCAGAAGCTCAA < 41bp 1 0.326922541639028 1 0.0962905287742615 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TERF2IP ENSG00000166848 CDS Human protein_coding chr16:75682389 chr16:75682397 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_34428 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_34229 DeepMRMD:1;iRNA_m5C:0.999536712157814 34230 chr16 75682397 75682397 1 + C T SKCM 75682394 + 75682374 75682414 41 GGACGCGCCGGTGAGCCCCTCCTCCCAGAAGCTCAAGCGGA GGACGCGCCGGTGAGCCCCTCCTTCCAGAAGCTCAAGCGGA < 41bp 1 0.043554427999303 1 0.747741460800171 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TERF2IP ENSG00000166848 CDS Human protein_coding chr16:75682394 chr16:75682397 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_34429 0 0 1 0 1 Ribosome 1 0.500232306942473 0.504517078399658 0.999535386115055 hm5C_site_34230 DeepMRMD:0.504517078399658;iRNA_m5C:0.999535386115055 34231 chr19 42848889 42848889 1 + C T SKCM 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTTGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.34670506779496 1 0.201928704977036 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848889 synonymous SNV . 0 3 hm5C_associated_SNPs_34430 0 0 1 0 2 Endoplasmic reticulum 1 0.500231762266293 1 0.999536475467415 hm5C_site_34231 DeepMRMD:1;iRNA_m5C:0.999536475467415 34232 chr2 32828135 32828135 1 + C A SKCM 32828127 + 32828107 32828147 41 GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTG GACCAGAAGAGAAGTGGAATCCTCAGACATCAAGCTTTTTG < 41bp 1 0.105514002282427 1 0.0665567815303802 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32828127 chr2:32828135 synonymous SNV . 0 29 hm5C_associated_SNPs_34431 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34232 DeepMRMD:1;iRNA_m5C:0.999536712157815 34233 chr1 109643057 109643057 1 + C T SKCM 109643037 + 109643017 109643057 41 CCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCTCCTC CCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCTCCTT < 41bp 1 0.672261336915193 1 0.209209769964218 experiment 0.655477326169615 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643037 chr1:109643057 . . 0 41 hm5C_associated_SNPs_34432 0 0 1 2 0 unknown 1 0.500231625554198 1 0.999536748891604 hm5C_site_34233 DeepMRMD:1;iRNA_m5C:0.999536748891604 34234 chr1 109643057 109643057 1 + C T SKCM 109643050 + 109643030 109643070 41 GGCCGACCCGAAATGAAAAGCTCTCCTCCTGCGAAGCCCCC GGCCGACCCGAAATGAAAAGCTCTCCTTCTGCGAAGCCCCC < 41bp 1 0.176375900045502 1 0.0476024150848389 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643050 chr1:109643057 . . 0 28 hm5C_associated_SNPs_34433 0 0 1 2 0 unknown 1 0.500231643914979 1 0.999536712170043 hm5C_site_34234 DeepMRMD:1;iRNA_m5C:0.999536712170043 34235 chr1 109643057 109643057 1 + C T SKCM 109643068 + 109643048 109643088 41 AGCTCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG AGCTCTCCTTCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG < 41bp 1 0.154950487283158 1 0.153657376766205 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643068 chr1:109643057 . . 0 10 hm5C_associated_SNPs_34434 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_34235 DeepMRMD:1;iRNA_m5C:0.999536712157815 34236 chr1 109643058 109643058 1 + C T SKCM 109643050 + 109643030 109643070 41 GGCCGACCCGAAATGAAAAGCTCTCCTCCTGCGAAGCCCCC GGCCGACCCGAAATGAAAAGCTCTCCTCTTGCGAAGCCCCC < 41bp 1 0.188295261666186 1 0.109279960393906 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643050 chr1:109643058 . . 0 29 hm5C_associated_SNPs_34436 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_34236 DeepMRMD:1;iRNA_m5C:0.999536712157815 34237 chr1 109643058 109643058 1 + C T SKCM 109643068 + 109643048 109643088 41 AGCTCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG AGCTCTCCTCTTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG < 41bp 1 0.142876724847597 1 0.144681662321091 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643068 chr1:109643058 . . 0 11 hm5C_associated_SNPs_34437 0 0 1 2 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_34237 DeepMRMD:1;iRNA_m5C:0.999536712157814 34238 chr1 228246797 228246797 1 + C T SKCM 228246782 + 228246762 228246802 41 TGGTCGCAACCCGACTTCCGCGCCATCGGTGACTTCCTCAA TGGTCGCAACCCGACTTCCGCGCCATCGGTGACTTTCTCAA < 41bp 1 0.690191513342803 1 0.836208581924438 experiment 0.619616973314393 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WNT3A ENSG00000154342 CDS Human protein_coding chr1:228246782 chr1:228246797 synonymous SNV . 0 36 hm5C_associated_SNPs_34439 0 0 0 0 0 exosome 1 0.500231648616316 0.327582836151124 0.999536702767369 hm5C_site_34238 DeepMRMD:0.327582836151124;iRNA_m5C:0.999536702767369 34239 chr19 40704302 40704302 1 + G A SKCM 40704298 + 40704278 40704318 41 ACAGTCCTGATCCTGGAGGCCATCGAGAACCACAACCTCGC ACAGTCCTGATCCTGGAGGCCATCAAGAACCACAACCTCGC < 41bp 1 0.230002726348736 1 0.0886185169219971 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40704298 chr19:40704302 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_34441 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34239 DeepMRMD:1;iRNA_m5C:0.999536712157815 34240 chrX 73041549 73041549 1 + G A SKCM 73041535 - 73041515 73041555 41 CCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAGGA CCTTTTTCGTTTTTAAATCACTCACAGAGGGTGGGACAGGA < 41bp 1 0.102551649798977 1 0.0677701532840729 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041535 chrX:73041549 . . 0 7 hm5C_associated_SNPs_34442 0 0 1 2 0 unknown 1 0.500231643921093 1 0.999536712157813 hm5C_site_34240 DeepMRMD:1;iRNA_m5C:0.999536712157813 34241 chrX 73041549 73041549 1 + G A SKCM 73041537 - 73041517 73041557 41 GACCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAG GACCTTTTTCGTTTTTAAATCACTCACAGAGGGTGGGACAG < 41bp 1 0.0874526058710721 1 0.079292505979538 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041537 chrX:73041549 . . 0 9 hm5C_associated_SNPs_34443 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_34241 DeepMRMD:1;iRNA_m5C:0.999536712157815 34242 chrX 73041549 73041549 1 + G A SKCM 73041554 - 73041534 73041574 41 AGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACT AGGCCTGGCTGGGCTTTGACCTTTTTCGTTTTTAAATCACT < 41bp 1 0.0131663676950255 1 0.0880817472934723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041554 chrX:73041549 . . 0 26 hm5C_associated_SNPs_34444 0 0 1 2 0 unknown 1 0.5002304867954 1 0.9995390264092 hm5C_site_34242 DeepMRMD:1;iRNA_m5C:0.9995390264092 34243 chrX 73041549 73041549 1 + G A SKCM 73041561 - 73041541 73041581 41 TAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTA TAAATGTAGGCCTGGCTGGGCTTTGACCTTTTTCGTTTTTA < 41bp 1 0.0297149316841894 1 0.0456334054470062 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041561 chrX:73041549 . . 0 33 hm5C_associated_SNPs_34445 0 0 1 2 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_34243 DeepMRMD:1;iRNA_m5C:0.999536712157815 34244 chrX 73041549 73041549 1 + G A SKCM 73041566 - 73041546 73041586 41 TTCTCTAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGT TTCTCTAAATGTAGGCCTGGCTGGGCTTTGACCTTTTTCGT < 41bp 1 0.446994974412113 1 0.228501230478287 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041566 chrX:73041549 . . 0 38 hm5C_associated_SNPs_34446 0 0 1 2 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_34244 DeepMRMD:1;iRNA_m5C:0.999536712157814 34245 chr12 104492131 104492131 1 + C T SKCM 104492140 + 104492120 104492160 41 GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG GAAAGAGACTCTTTCAAATCCAGTGGCCACAGTGAAAGCGG < 41bp 1 0.448530188773693 1 0.363799870014191 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104492140 chr12:104492131 nonsynonymous SNV 1.000 0 12 hm5C_associated_SNPs_34447 0 0 1 0 1 Cytosol 1 0.500231635371285 1 0.99953672925743 hm5C_site_34245 DeepMRMD:1;iRNA_m5C:0.99953672925743 34246 chr11 108559732 108559732 1 + C T SKCM 108559748 + 108559728 108559768 41 ATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA ATTCTTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTA < 41bp 1 0.613630332547168 1 0.868967175483704 experiment 0.772739334905665 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX10 ENSG00000178105 CDS Human protein_coding chr11:108559748 chr11:108559732 synonymous SNV . 0 5 hm5C_associated_SNPs_34448 0 0 1 0 2 Nucleus 1 0.500231645253295 0.262065649032592 0.99953670949341 hm5C_site_34246 DeepMRMD:0.262065649032592;iRNA_m5C:0.99953670949341 34247 chr20 30381757 30381757 1 + C T SKCM 30381750 + 30381730 30381770 41 CAAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGA CAAGAACTGTGGAAATATGCCCTTTCTTGTTTGATTCTCGA < 41bp 1 0.0217362454242113 1 0.0465232729911804 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381750 chr20:30381757 nonsynonymous SNV 0.988 4 28 hm5C_associated_SNPs_34449 0 0 1 0 1 Cytosol 1 0.50023164366376 1 0.99953671267248 hm5C_site_34247 DeepMRMD:1;iRNA_m5C:0.99953671267248 34248 chr20 30381757 30381757 1 + C T SKCM 30381751 + 30381731 30381771 41 AAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGAG AAGAACTGTGGAAATATGCCCTTTCTTGTTTGATTCTCGAG < 41bp 1 0.0398446610596595 1 0.0785481035709381 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381751 chr20:30381757 nonsynonymous SNV 0.988 4 27 hm5C_associated_SNPs_34450 0 0 1 0 1 Cytosol 1 0.500231645262494 1 0.999536709475012 hm5C_site_34248 DeepMRMD:1;iRNA_m5C:0.999536709475012 34249 chr5 110097150 110097150 1 + A G SKCM 110097160 + 110097140 110097180 41 TGTGCAGAGTATGTTGGATGCTTATTTTCCAGAACTTATTG TGTGCAGAGTGTGTTGGATGCTTATTTTCCAGAACTTATTG < 41bp 1 0.327303197837175 1 0.0768746435642242 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC25A46 ENSG00000164209 CDS Human protein_coding chr5:110097160 chr5:110097150 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_34451 0 0 1 0 0 Cytosol 1 0.500231667739141 1 0.999536664521719 hm5C_site_34249 DeepMRMD:1;iRNA_m5C:0.999536664521719 34250 chr11 65829377 65829377 1 + C T SKCM 65829381 + 65829361 65829401 41 GAATGCCCACAAGGTCCCTCCCCCATGGCTGATTGCCATGC GAATGCCCACAAGGTCTCTCCCCCATGGCTGATTGCCATGC < 41bp 1 0.575179007214974 1 0.363151490688324 experiment 0.849641985570053 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65829381 chr11:65829377 nonsynonymous SNV 0.975 4 17 hm5C_associated_SNPs_34452 0 0 1 0 2 Nucleus 1 0.500231629634245 1 0.999536740731509 hm5C_site_34250 DeepMRMD:1;iRNA_m5C:0.999536740731509 34251 chrX 152958983 152958983 1 + C T SKCM 152958977 + 152958957 152958997 41 TTCTTTGCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCAT TTCTTTGCTGGCTTCGTGGTCTTCTCTATCCTGGGCTTCAT < 41bp 1 0.145062560809125 1 0.0418918132781982 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958977 chrX:152958983 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_34453 0 0 1 0 3 Ribosome 1 0.500231643922856 1 0.999536712154288 hm5C_site_34251 DeepMRMD:1;iRNA_m5C:0.999536712154288 34252 chr12 123028725 123028725 1 + C T SKCM 123028737 + 123028717 123028757 41 AATCAAGTCCAGTTTTATTTCTACTGAAAATTATCATACTC AATCAAGTTCAGTTTTATTTCTACTGAAAATTATCATACTC < 41bp 1 0.306175193916776 1 0.528101027011871 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123028737 chr12:123028725 nonsynonymous SNV 0.985 1 9 hm5C_associated_SNPs_34454 0 0 1 0 2 Nucleus 1 0.500227944586234 0.943797945976258 0.999544110827532 hm5C_site_34252 DeepMRMD:0.943797945976258;iRNA_m5C:0.999544110827532 34253 chr16 30941555 30941555 1 + G A SKCM 30941537 + 30941517 30941557 41 TCTTCCTCCTCGGACTCAGACTCCGACTCCGACTCTTCGGG TCTTCCTCCTCGGACTCAGACTCCGACTCCGACTCTTCAGG < 41bp 1 0.403038661498008 1 0.8157958984375 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30941537 chr16:30941555 synonymous SNV . 0 39 hm5C_associated_SNPs_34455 0 0 1 0 0 chromatin 1 0.500231643920725 0.368408203125 0.999536712158551 hm5C_site_34253 DeepMRMD:0.368408203125;iRNA_m5C:0.999536712158551 34254 chr1 156756708 156756708 1 + C T SKCM 156756700 + 156756680 156756720 41 ACAGTGATGAGGAAGTAGCCCCCGAAAACTTTTTCTCCCTC ACAGTGATGAGGAAGTAGCCCCCGAAAATTTTTTCTCCCTC < 41bp 1 0.669377029972181 1 0.352203786373138 experiment 0.661245940055638 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756700 chr1:156756708 synonymous SNV . 0 29 hm5C_associated_SNPs_34457 0 0 1 0 0 Ribosome 1 0.500231643921075 1 0.999536712157849 hm5C_site_34254 DeepMRMD:1;iRNA_m5C:0.999536712157849 34255 chr3 184026599 184026599 1 + C T SKCM 184026617 + 184026597 184026637 41 GGCCACTGAGGAGTTTCTTCCTGTTACCCCCATTCTGGAAG GGTCACTGAGGAGTTTCTTCCTGTTACCCCCATTCTGGAAG < 41bp 1 0.446046572507988 1 0.0460822880268097 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184026617 chr3:184026599 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_34458 0 0 0 0 0 Ribosome 1 0.500231643878168 1 0.999536712243663 hm5C_site_34255 DeepMRMD:1;iRNA_m5C:0.999536712243663 34256 chr21 45523370 45523370 1 + C T SKCM 45523376 + 45523356 45523396 41 CAAGTCCTGGTCATCCCCAGCCAAGATGACCACGTCCTGGA CAAGTCCTGGTCATTCCCAGCCAAGATGACCACGTCCTGGA < 41bp 1 0.197936053154496 1 0.310967624187469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45523376 chr21:45523370 synonymous SNV . 0 15 hm5C_associated_SNPs_34459 0 0 0 0 0 Cytosol 1 0.500231644189409 1 0.999536711621182 hm5C_site_34256 DeepMRMD:1;iRNA_m5C:0.999536711621182 34257 chr14 65209922 65209922 1 + G A SKCM 65209911 + 65209891 65209931 41 ACCTTCAGCTGGCCCGACGTCCGTGAGCTCTGCTCCAAGTA ACCTTCAGCTGGCCCGACGTCCGTGAGCTCTACTCCAAGTA < 41bp 1 0.249381169058292 1 0.0989115238189697 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65209911 chr14:65209922 nonsynonymous SNV 0.992 0 32 hm5C_associated_SNPs_34460 0 0 1 0 0 Nucleus 1 0.500233204316836 1 0.999533591366327 hm5C_site_34257 DeepMRMD:1;iRNA_m5C:0.999533591366327 34258 chr1 3328709 3328709 1 + G A SKCM 3328714 + 3328694 3328734 41 GGCCAGCCCAAGTTTGGGGGCGGCTTGGCGCCCCCGGGGGC GGCCAGCCCAAGTTTAGGGGCGGCTTGGCGCCCCCGGGGGC < 41bp 1 0.400973779802798 1 0.112997740507126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328714 chr1:3328709 nonsynonymous SNV 0.032 1 16 hm5C_associated_SNPs_34461 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34258 DeepMRMD:1;iRNA_m5C:0.999536712157815 34259 chr1 3328709 3328709 1 + G A SKCM 3328724 + 3328704 3328744 41 AGTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGC AGTTTAGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGC < 41bp 1 0.214659276985207 1 0.176755279302597 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328724 chr1:3328709 nonsynonymous SNV 0.032 1 6 hm5C_associated_SNPs_34462 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_34259 DeepMRMD:1;iRNA_m5C:0.999536712157815 34260 chr1 3328709 3328709 1 + G A SKCM 3328725 + 3328705 3328745 41 GTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCG GTTTAGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCG < 41bp 1 0.451912831610848 1 0.459005445241928 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328725 chr1:3328709 nonsynonymous SNV 0.032 1 5 hm5C_associated_SNPs_34463 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34260 DeepMRMD:1;iRNA_m5C:0.999536712157815 34261 chr1 3328709 3328709 1 + G A SKCM 3328726 + 3328706 3328746 41 TTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGT TTTAGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGT < 41bp 1 0.490833781116799 1 0.5617436170578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328726 chr1:3328709 nonsynonymous SNV 0.032 1 4 hm5C_associated_SNPs_34464 0 0 0 0 0 Nucleus 1 0.500231643921093 0.8765127658844 0.999536712157813 hm5C_site_34261 DeepMRMD:0.8765127658844;iRNA_m5C:0.999536712157813 34262 chr1 3328709 3328709 1 + G A SKCM 3328727 + 3328707 3328747 41 TTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGTG TTAGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGTG < 41bp 1 0.564138535071788 1 0.777755498886108 experiment 0.871722929856424 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328727 chr1:3328709 nonsynonymous SNV 0.032 1 3 hm5C_associated_SNPs_34465 0 0 0 0 0 Nucleus 1 0.500231643917781 0.444489002227784 0.999536712164438 hm5C_site_34262 DeepMRMD:0.444489002227784;iRNA_m5C:0.999536712164438 34263 chr7 141341091 141341091 1 + C T SKCM 141341103 + 141341083 141341123 41 CACGGGACCTACAGAGAGACCTCCCAATGAACCAGAGGAGA CACGGGACTTACAGAGAGACCTCCCAATGAACCAGAGGAGA < 41bp 1 0.321703754871213 1 0.099267452955246 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141341103 chr7:141341091 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_34466 0 0 1 0 1 Cytosol 1 0.500231643921105 1 0.99953671215779 hm5C_site_34263 DeepMRMD:1;iRNA_m5C:0.99953671215779 34264 chr2 121554972 121554972 1 + C T SKCM 121554962 + 121554942 121554982 41 AAAAGTGGGATCCTGGAGGCCGCTGGCTTCCCCGACCCGGG AAAAGTGGGATCCTGGAGGCCGCTGGCTTCTCCGACCCGGG < 41bp 1 0.258036618691654 1 0.546629905700684 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLI2 ENSG00000074047 CDS Human protein_coding chr2:121554962 chr2:121554972 nonsynonymous SNV 0.872 0 31 hm5C_associated_SNPs_34467 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.906740188598632 0.999536712157815 hm5C_site_34264 DeepMRMD:0.906740188598632;iRNA_m5C:0.999536712157815 34265 chr22 24466778 24466778 1 + C T SKCM 24466762 + 24466742 24466782 41 CTGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCA CTGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATTGGCA < 41bp 1 0.16064288036865 1 0.84731388092041 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466762 chr22:24466778 nonsynonymous SNV 0.310 2 37 hm5C_associated_SNPs_34468 0 0 1 0 1 Cytosol 1 0.5002316439222 0.30537223815918 0.9995367121556 hm5C_site_34265 DeepMRMD:0.30537223815918;iRNA_m5C:0.9995367121556 34266 chr22 24466778 24466778 1 + C T SKCM 24466763 + 24466743 24466783 41 TGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCAG TGTACTAGGACTCCTTGCTCCGGCTGAAGGACTATTGGCAG < 41bp 1 0.354528871434959 1 0.669229090213776 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466763 chr22:24466778 nonsynonymous SNV 0.310 2 36 hm5C_associated_SNPs_34469 0 0 1 0 1 Cytosol 1 0.500231643921092 0.661541819572448 0.999536712157815 hm5C_site_34266 DeepMRMD:0.661541819572448;iRNA_m5C:0.999536712157815 34267 chr22 24466778 24466778 1 + C T SKCM 24466766 + 24466746 24466786 41 ACTAGGACTCCTTGCTCCGGCTGAAGGACTATCGGCAGTGT ACTAGGACTCCTTGCTCCGGCTGAAGGACTATTGGCAGTGT < 41bp 1 0.488989648999341 1 0.308522999286652 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466766 chr22:24466778 nonsynonymous SNV 0.310 2 33 hm5C_associated_SNPs_34470 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34267 DeepMRMD:1;iRNA_m5C:0.999536712157815 34268 chr1 116929972 116929972 1 + C T SKCM 116929971 + 116929951 116929991 41 TGGTCCCAACGCCCTCACTCCCCCTCCCACTACTCCTGAAT TGGTCCCAACGCCCTCACTCCTCCTCCCACTACTCCTGAAT < 41bp 1 0.246271431787008 1 0.272294819355011 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116929971 chr1:116929972 synonymous SNV . 0 22 hm5C_associated_SNPs_34471 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_34268 DeepMRMD:1;iRNA_m5C:0.999536712157816 34269 chr17 66038262 66038262 1 + C T SKCM 66038276 + 66038256 66038296 41 TTGATTCCGAAATTTGTGTCCTTCTTGGGCAGAACTGATTG TTGATTTCGAAATTTGTGTCCTTCTTGGGCAGAACTGATTG < 41bp 1 0.224352141118662 1 0.0919450223445892 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66038276 chr17:66038262 nonsynonymous SNV 0.997 1 7 hm5C_associated_SNPs_34472 0 0 1 0 1 Cytosol 1 0.500231500684285 1 0.99953699863143 hm5C_site_34269 DeepMRMD:1;iRNA_m5C:0.99953699863143 34270 chr4 144390252 144390252 1 + G A SKCM 144390263 + 144390243 144390283 41 TGACCAACAGAAGACCTTGGCTCTAAAGAGTACCCGGGAAG TGACCAACAAAAGACCTTGGCTCTAAAGAGTACCCGGGAAG < 41bp 1 0.548301143686773 1 0.779935598373413 experiment 0.903397712626454 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144390263 chr4:144390252 synonymous SNV . 0 10 hm5C_associated_SNPs_34473 0 0 1 0 1 chromatin 1 0.500231643921092 0.440128803253174 0.999536712157815 hm5C_site_34270 DeepMRMD:0.440128803253174;iRNA_m5C:0.999536712157815 34271 chr19 19656495 19656495 1 + C T SKCM 19656481 + 19656461 19656501 41 CACCGGTGCCCGCGGAGGACCCAGCTGCCTTCTCCATGCTG CACCGGTGCCCGCGGAGGACCCAGCTGCCTTCTCTATGCTG < 41bp 1 0.160198928163353 1 0.253583908081055 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19656481 chr19:19656495 synonymous SNV . 0 35 hm5C_associated_SNPs_34474 0 0 0 0 0 exosome 1 0.500231643926857 1 0.999536712146285 hm5C_site_34271 DeepMRMD:1;iRNA_m5C:0.999536712146285 34272 chr19 19656494 19656494 1 + C T SKCM 19656481 + 19656461 19656501 41 CACCGGTGCCCGCGGAGGACCCAGCTGCCTTCTCCATGCTG CACCGGTGCCCGCGGAGGACCCAGCTGCCTTCTTCATGCTG < 41bp 1 0.156080712335142 1 0.325245290994644 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19656481 chr19:19656494 nonsynonymous SNV 0.230 1 34 hm5C_associated_SNPs_34475 0 0 0 0 0 exosome 1 0.500231643706895 1 0.999536712586209 hm5C_site_34272 DeepMRMD:1;iRNA_m5C:0.999536712586209 34273 chr3 184026631 184026631 1 + C T SKCM 184026617 + 184026597 184026637 41 GGCCACTGAGGAGTTTCTTCCTGTTACCCCCATTCTGGAAG GGCCACTGAGGAGTTTCTTCCTGTTACCCCCATTTTGGAAG < 41bp 1 0.407368374227991 1 0.0561911761760712 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184026617 chr3:184026631 synonymous SNV . 0 35 hm5C_associated_SNPs_34476 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34273 DeepMRMD:1;iRNA_m5C:0.999536712157815 34274 chr7 44801181 44801181 1 + C T SKCM 44801172 + 44801152 44801192 41 TTCCAGCTGCGAGACTCAGTCTACAAGACCCTGATAATGAG TTCCAGCTGCGAGACTCAGTCTACAAGACTCTGATAATGAG < 41bp 1 0.574481016005192 1 0.875350117683411 experiment 0.851037967989616 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801172 chr7:44801181 synonymous SNV . 0 30 hm5C_associated_SNPs_34477 0 0 1 0 1 Cytosol 1 0.500231645097336 0.249299764633178 0.999536709805328 hm5C_site_34274 DeepMRMD:0.249299764633178;iRNA_m5C:0.999536709805328 34275 chr16 3021895 3021895 1 + C T SKCM 3021876 + 3021856 3021896 41 GCACCTGCTGAGCGTGGGCTCCATCCTGCAGCTGCACGCCG GCACCTGCTGAGCGTGGGCTCCATCCTGCAGCTGCACGCTG < 41bp 1 0.115415388952272 1 0.0817563533782959 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAQR4 ENSG00000162073 CDS Human protein_coding chr16:3021876 chr16:3021895 synonymous SNV . 0 40 hm5C_associated_SNPs_34478 0 0 1 0 0 Ribosome 1 0.500291947725729 1 0.999416104548541 hm5C_site_34275 DeepMRMD:1;iRNA_m5C:0.999416104548541 34276 chr17 78022533 78022533 1 + C T SKCM 78022532 + 78022512 78022552 41 GGAAGCAGAAGACGAAGGGTCCCAGCTGGTGGTTTTGGACC GGAAGCAGAAGACGAAGGGTCTCAGCTGGTGGTTTTGGACC < 41bp 1 0.468659264582778 1 0.471945643424988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022532 chr17:78022533 synonymous SNV . 0 22 hm5C_associated_SNPs_34479 0 0 1 0 1 exosome 1 0.500231643921098 1 0.999536712157804 hm5C_site_34276 DeepMRMD:1;iRNA_m5C:0.999536712157804 34277 chr17 79080642 79080642 1 + C T SKCM 79080643 + 79080623 79080663 41 CGCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCT CGCCGCCTCCCGGGCCTTCTCCGCCCAGACGGCCAGCGGCT < 41bp 1 0.502996867434134 1 0.436699509620667 experiment 0.994006265131732 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080643 chr17:79080642 nonsynonymous SNV 0.433 0 20 hm5C_associated_SNPs_34480 0 0 1 0 2 Cytosol 1 0.500231643921364 1 0.999536712157272 hm5C_site_34277 DeepMRMD:1;iRNA_m5C:0.999536712157272 34278 chr17 79080642 79080642 1 + C T SKCM 79080644 + 79080624 79080664 41 GCCGCCTCCCGGGCCTTCCCCGCCCAGACGGCCAGCGGCTT GCCGCCTCCCGGGCCTTCTCCGCCCAGACGGCCAGCGGCTT < 41bp 1 0.56757357533655 1 0.222907245159149 experiment 0.8648528493269 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080644 chr17:79080642 nonsynonymous SNV 0.433 0 19 hm5C_associated_SNPs_34481 0 0 1 0 2 Cytosol 1 0.500231643921088 1 0.999536712157825 hm5C_site_34278 DeepMRMD:1;iRNA_m5C:0.999536712157825 34279 chr1 31896635 31896635 1 + C T SKCM 31896651 + 31896631 31896671 41 TCTTCCTCTTCCTGGGGGTGCTGGTGTCCATCATTATGCTG TCTTTCTCTTCCTGGGGGTGCTGGTGTCCATCATTATGCTG < 41bp 1 0.580078278636969 1 0.259155482053757 experiment 0.839843442726062 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31896651 chr1:31896635 synonymous SNV . 0 5 hm5C_associated_SNPs_34483 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643967722 1 0.999536712064555 hm5C_site_34279 DeepMRMD:1;iRNA_m5C:0.999536712064555 34280 chr20 35176481 35176481 1 + C T SKCM 35176493 + 35176473 35176513 41 AGCGAGGCCCCGGGGCCCATCAACTTCACCATGTTCCTCAC AGCGAGGCTCCGGGGCCCATCAACTTCACCATGTTCCTCAC < 41bp 1 0.5735222659213 1 0.809164702892303 experiment 0.852955468157401 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYL9 ENSG00000101335 CDS Human protein_coding chr20:35176493 chr20:35176481 synonymous SNV . 0 9 hm5C_associated_SNPs_34484 0 0 0 0 1 Cytosol 1 0.50023164408608 0.381670594215394 0.999536711827839 hm5C_site_34280 DeepMRMD:0.381670594215394;iRNA_m5C:0.999536711827839 34281 chr1 205238736 205238736 1 + C T SKCM 205238737 + 205238717 205238757 41 GGCAGTGCCACACTCGTCTCCAGCCCCAAGTATGGCAGCGA GGCAGTGCCACACTCGTCTTCAGCCCCAAGTATGGCAGCGA < 41bp 1 0.29198039415241 1 0.7351975440979 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205238737 chr1:205238736 nonsynonymous SNV 0.985 4 20 hm5C_associated_SNPs_34486 0 0 0 0 0 chromatin 1 0.500231643921092 0.5296049118042 0.999536712157815 hm5C_site_34281 DeepMRMD:0.5296049118042;iRNA_m5C:0.999536712157815 34282 chr6 30886611 30886611 1 + G A SKCM 30886601 + 30886581 30886621 41 AGTGTTTAAATGTTTATCTTCAGATGCAGAGGTTGTGGTAG AGTGTTTAAATGTTTATCTTCAGATGCAGAAGTTGTGGTAG < 41bp 1 0.184754057617783 1 0.613316476345062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30886601 chr6:30886611 synonymous SNV . 0 31 hm5C_associated_SNPs_34487 0 0 1 0 2 Ribosome 1 0.500231600748722 0.773367047309876 0.999536798502557 hm5C_site_34282 DeepMRMD:0.773367047309876;iRNA_m5C:0.999536798502557 34283 chr7 142459658 142459658 1 + C T SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATTGAAGTCCTGGAGGGGAA < 41bp 1 0.500756029705766 1 0.126122623682022 experiment 0.998487940588467 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459658 synonymous SNV 0.234 0 24 hm5C_associated_SNPs_34488 0 0 0 0 1 Cytosol 1 0.500231643921226 1 0.999536712157547 hm5C_site_34283 DeepMRMD:1;iRNA_m5C:0.999536712157547 34284 chr7 142459658 142459658 1 + C T SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATTGAAGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.529596501038295 1 0.226430237293243 experiment 0.940806997923411 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459658 synonymous SNV 0.234 0 15 hm5C_associated_SNPs_34489 0 0 0 0 1 Cytosol 1 0.500231643885476 1 0.999536712229048 hm5C_site_34284 DeepMRMD:1;iRNA_m5C:0.999536712229048 34285 chr2 102486842 102486842 1 + A G SKCM 102486859 + 102486839 102486879 41 ATGACCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGGT ATGGCCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGGT < 41bp 1 0.109783164032313 1 0.0690830051898956 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486859 chr2:102486842 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_34490 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34285 DeepMRMD:1;iRNA_m5C:0.999536712157815 34286 chr5 176524653 176524653 1 + C T SKCM 176524669 + 176524649 176524689 41 TCCCCTTCGGGTCTGGGGTGCAGACATGAGCAAGGCTCAAG TCCCTTTCGGGTCTGGGGTGCAGACATGAGCAAGGCTCAAG < 41bp 1 0.234227232154777 1 0.347889840602875 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524669 chr5:176524653 synonymous SNV . 0 5 hm5C_associated_SNPs_34491 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34286 DeepMRMD:1;iRNA_m5C:0.999536712157815 34287 chr2 167056272 167056272 1 + C T SKCM 167056285 - 167056265 167056305 41 CCAGGATTGGCCGAATCCTACGTCTAGTCAAAGGAGCAAAG CCAGGATTGGCCGAATCCTACGTCTAGTCAAAGAAGCAAAG < 41bp 1 0.153476421589778 1 0.0521674752235413 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167056285 chr2:167056272 nonsynonymous SNV 0.997 4 34 hm5C_associated_SNPs_34492 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34287 DeepMRMD:1;iRNA_m5C:0.999536712157815 34288 chr19 990243 990243 1 + C T SKCM 990252 + 990232 990272 41 GGCCGACCCCTCCAGGATTCCGGCGCCCAGGCACGTCTGGT GGCCGACCCCTTCAGGATTCCGGCGCCCAGGCACGTCTGGT < 41bp 1 0.565902684316054 1 0.795061230659485 experiment 0.868194631367891 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR18 ENSG00000065268 CDS Human protein_coding chr19:990252 chr19:990243 nonsynonymous SNV 0.598 0 12 hm5C_associated_SNPs_34494 0 0 0 0 0 Ribosome 1 0.500233517458308 0.40987753868103 0.999532965083384 hm5C_site_34288 DeepMRMD:0.40987753868103;iRNA_m5C:0.999532965083384 34289 chr16 57113024 57113024 1 + C T SKCM 57113028 + 57113008 57113048 41 CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATCAGGTA CAGGCCCTGGATGGATTCCCCCATTTGGAAGAGATCAGGTA < 41bp 1 0.0833839959191437 1 0.0408206582069397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57113028 chr16:57113024 nonsynonymous SNV 0.589 0 17 hm5C_associated_SNPs_34495 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34289 DeepMRMD:1;iRNA_m5C:0.999536712157815 34290 chr6 26091745 26091745 1 + T C SKCM 26091728 + 26091708 26091748 41 GGAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACC GGAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCCACC < 41bp 1 0.352485699111034 1 0.234200030565262 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091728 chr6:26091745 nonsynonymous SNV 0.922 3 38 hm5C_associated_SNPs_34496 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643874684 1 0.999536712250632 hm5C_site_34290 DeepMRMD:1;iRNA_m5C:0.999536712250632 34291 chr6 26091745 26091745 1 + T C SKCM 26091729 + 26091709 26091749 41 GAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACCT GAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCCACCT < 41bp 1 0.472023991522463 1 0.458757281303406 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091729 chr6:26091745 nonsynonymous SNV 0.922 3 37 hm5C_associated_SNPs_34497 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_34291 DeepMRMD:1;iRNA_m5C:0.999536712157814 34292 chr3 17056268 17056268 1 + G A SKCM 17056251 + 17056231 17056271 41 GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTGGCG GCCTCTCCTCTGTGGCCAATCTCATGCAGTGCATGTTAGCG < 41bp 1 0.53724680882744 1 0.156078994274139 experiment 0.92550638234512 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17056251 chr3:17056268 synonymous SNV . 0 38 hm5C_associated_SNPs_34498 0 0 0 0 1 nucleus 1 0.500229813748285 1 0.999540372503429 hm5C_site_34292 DeepMRMD:1;iRNA_m5C:0.999540372503429 34293 chr19 12924231 12924231 1 + C T SKCM 12924211 + 12924191 12924231 41 TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTC TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTT < 41bp 1 0.088189676583339 1 0.0580019354820251 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924211 chr19:12924231 nonsynonymous SNV 0.076 2 41 hm5C_associated_SNPs_34499 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34293 DeepMRMD:1;iRNA_m5C:0.999536712157815 34294 chr19 12924231 12924231 1 + C T SKCM 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCCCGTCCCCGTTCTTTCCACCGATATTTCCTGGAACG < 41bp 1 0.199249349694003 1 0.0666802227497101 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924231 nonsynonymous SNV 0.076 2 20 hm5C_associated_SNPs_34500 0 0 1 0 1 Ribosome 1 0.500231643921107 1 0.999536712157786 hm5C_site_34294 DeepMRMD:1;iRNA_m5C:0.999536712157786 34295 chr4 77661602 77661602 1 + G A SKCM 77661597 + 77661577 77661617 41 CCGCACACATCCAGTCTGGGCCGGAGGGGGCCCGGCCCAGG CCGCACACATCCAGTCTGGGCCGGAAGGGGCCCGGCCCAGG < 41bp 1 0.572076157638339 1 0.326100736856461 experiment 0.855847684723323 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661597 chr4:77661602 nonsynonymous SNV 0.006 1 26 hm5C_associated_SNPs_34502 0 0 1 0 0 Ribosome 1 0.500231643921217 1 0.999536712157567 hm5C_site_34295 DeepMRMD:1;iRNA_m5C:0.999536712157567 34296 chr4 77661602 77661602 1 + G A SKCM 77661608 + 77661588 77661628 41 CAGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGG CAGTCTGGGCCGGAAGGGGCCCGGCCCAGGCAGCGCCTCGG < 41bp 1 0.25581874086825 1 0.531990945339203 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661608 chr4:77661602 nonsynonymous SNV 0.006 1 15 hm5C_associated_SNPs_34504 0 0 1 0 0 Ribosome 1 0.500231643921092 0.936018109321594 0.999536712157815 hm5C_site_34296 DeepMRMD:0.936018109321594;iRNA_m5C:0.999536712157815 34297 chr4 77661602 77661602 1 + G A SKCM 77661609 + 77661589 77661629 41 AGTCTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGC AGTCTGGGCCGGAAGGGGCCCGGCCCAGGCAGCGCCTCGGC < 41bp 1 0.433012426943214 1 0.414959132671356 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661609 chr4:77661602 nonsynonymous SNV 0.006 1 14 hm5C_associated_SNPs_34505 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34297 DeepMRMD:1;iRNA_m5C:0.999536712157815 34298 chr4 77661602 77661602 1 + G A SKCM 77661612 + 77661592 77661632 41 CTGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGCTCT CTGGGCCGGAAGGGGCCCGGCCCAGGCAGCGCCTCGGCTCT < 41bp 1 0.279391582760326 1 0.121695399284363 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661612 chr4:77661602 nonsynonymous SNV 0.006 1 11 hm5C_associated_SNPs_34506 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34298 DeepMRMD:1;iRNA_m5C:0.999536712157815 34299 chr4 77661602 77661602 1 + G A SKCM 77661613 + 77661593 77661633 41 TGGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGCTCTT TGGGCCGGAAGGGGCCCGGCCCAGGCAGCGCCTCGGCTCTT < 41bp 1 0.359451116824552 1 0.208711117506027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661613 chr4:77661602 nonsynonymous SNV 0.006 1 10 hm5C_associated_SNPs_34507 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34299 DeepMRMD:1;iRNA_m5C:0.999536712157815 34300 chr4 77661602 77661602 1 + G A SKCM 77661614 + 77661594 77661634 41 GGGCCGGAGGGGGCCCGGCCCAGGCAGCGCCTCGGCTCTTC GGGCCGGAAGGGGCCCGGCCCAGGCAGCGCCTCGGCTCTTC < 41bp 1 0.635226341751663 1 0.300661087036133 experiment 0.729547316496674 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661614 chr4:77661602 nonsynonymous SNV 0.006 1 9 hm5C_associated_SNPs_34508 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34300 DeepMRMD:1;iRNA_m5C:0.999536712157815 34301 chr2 113953766 113953766 1 + C T SKCM 113953757 + 113953737 113953777 41 ACAGCCAGACCTGAGAAGGCCCAGCCGTCCCTGCCAGCTGG ACAGCCAGACCTGAGAAGGCCCAGCCGTCTCTGCCAGCTGG < 41bp 1 0.0956023268081551 1 0.0834952294826508 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113953757 chr2:113953766 synonymous SNV . 0 30 hm5C_associated_SNPs_34509 0 0 1 0 1 chromatin 1 0.500231628329128 1 0.999536743341743 hm5C_site_34301 DeepMRMD:1;iRNA_m5C:0.999536743341743 34302 chr7 73731904 73731904 1 + C T SKCM 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCTCCGGCCGTGGGGGGAAGCA < 41bp 1 0.517295258353219 1 0.848106622695923 experiment 0.965409483293563 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731904 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_34510 0 0 0 0 2 Ribosome 1 0.500231643921093 0.303786754608154 0.999536712157814 hm5C_site_34302 DeepMRMD:0.303786754608154;iRNA_m5C:0.999536712157814 34303 chr7 73731904 73731904 1 + C T SKCM 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCTCCGGCCGTGGGGGGAAGCACT < 41bp 1 0.221128627711387 1 0.85800564289093 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731904 nonsynonymous SNV 0.996 3 20 hm5C_associated_SNPs_34511 0 0 0 0 2 Ribosome 1 0.500231643917064 0.28398871421814 0.999536712165872 hm5C_site_34303 DeepMRMD:0.28398871421814;iRNA_m5C:0.999536712165872 34304 chr7 73731904 73731904 1 + C T SKCM 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCTCCGGCCGTGGGGGGAAGCACTC < 41bp 1 0.384438770194521 1 0.537100374698639 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731904 nonsynonymous SNV 0.996 3 19 hm5C_associated_SNPs_34512 0 0 0 0 2 Ribosome 1 0.500231643921092 0.925799250602722 0.999536712157815 hm5C_site_34304 DeepMRMD:0.925799250602722;iRNA_m5C:0.999536712157815 34305 chr15 81214441 81214441 1 + G A SKCM 81214448 + 81214428 81214468 41 CACATTCCACTGGGAAAATTCTATAACAACCGAGCACATTC CACATTCCACTGGAAAAATTCTATAACAACCGAGCACATTC < 41bp 1 0.311676847208784 1 0.237704992294312 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81214448 chr15:81214441 nonsynonymous SNV 0.991 4 14 hm5C_associated_SNPs_34513 0 0 0 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_34305 DeepMRMD:1;iRNA_m5C:0.999536712157814 34306 chr1 186386745 186386745 1 + C T SKCM 186386735 + 186386715 186386755 41 ACAACACAGATGATGAACAACCAAAACAACCAATTAAAACT ACAACACAGATGATGAACAACCAAAACAACTAATTAAAACT < 41bp 1 0.290399064790971 1 0.211376547813416 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C1orf27 ENSG00000157181 CDS Human protein_coding chr1:186386735 chr1:186386745 nonsynonymous SNV 0.706 0 31 hm5C_associated_SNPs_34514 0 0 1 0 2 chromatin 1 0.500231645104509 1 0.999536709790982 hm5C_site_34306 DeepMRMD:1;iRNA_m5C:0.999536709790982 34307 chr11 118885705 118885705 1 + T G SKCM 118885708 + 118885688 118885728 41 TTAATTTTTTTTTCAGGTGCCACACCTCCCTGGATGATCCA TTAATTTTTTTTTCAGGGGCCACACCTCCCTGGATGATCCA < 41bp 1 0.041358926856698 1 0.0626097917556763 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118885708 chr11:118885705 synonymous SNV . 0 18 hm5C_associated_SNPs_34515 0 0 1 1 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34307 DeepMRMD:1;iRNA_m5C:0.999536712157815 34308 chr3 127340601 127340601 1 + C T SKCM 127340602 + 127340582 127340622 41 ACCTGAAAAGGAAAATGATCCTGCAGCAGTTCTGAGGCCCT ACCTGAAAAGGAAAATGATTCTGCAGCAGTTCTGAGGCCCT < 41bp 1 0.688732292825714 1 0.918533205986023 experiment 0.622535414348572 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127340602 chr3:127340601 synonymous SNV . 0 20 hm5C_associated_SNPs_34516 0 0 1 0 1 Cytosol 1 0.500231643921264 0.162933588027954 0.999536712157472 hm5C_site_34308 DeepMRMD:0.162933588027954;iRNA_m5C:0.999536712157472 34309 chr4 57181813 57181813 1 + C T SKCM 57181825 + 57181805 57181845 41 CCGCCAGTCAATGCAAAGTTCTCTATTATGCCTGCCTGGCA CCGCCAGTTAATGCAAAGTTCTCTATTATGCCTGCCTGGCA < 41bp 1 0.543035658922175 1 0.847059905529022 experiment 0.91392868215565 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57181825 chr4:57181813 synonymous SNV . 0 9 hm5C_associated_SNPs_34517 0 0 0 0 0 cytosol 1 0.500231644014193 0.305880188941956 0.999536711971614 hm5C_site_34309 DeepMRMD:0.305880188941956;iRNA_m5C:0.999536711971614 34310 chr6 151671190 151671190 1 + C T SKCM 151671207 + 151671187 151671227 41 CTCCGGACAGCCAGGAGGAGCAAAAGGGCGAGAGCTCTGCC CTCTGGACAGCCAGGAGGAGCAAAAGGGCGAGAGCTCTGCC < 41bp 1 0.611206797925603 1 0.712342381477356 experiment 0.777586404148793 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151671207 chr6:151671190 nonsynonymous SNV 0.156 3 4 hm5C_associated_SNPs_34518 0 0 1 0 0 Ribosome 1 0.500231643921092 0.575315237045288 0.999536712157815 hm5C_site_34310 DeepMRMD:0.575315237045288;iRNA_m5C:0.999536712157815 34311 chr3 49568307 49568307 1 + C T SKCM 49568306 + 49568286 49568326 41 CCACACCCTGGAGGGCCTCCCCCTTGACACTGATAAGGGTG CCACACCCTGGAGGGCCTCCCTCTTGACACTGATAAGGGTG < 41bp 1 0.420393132947558 1 0.22809636592865 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DAG1 ENSG00000173402 CDS Human protein_coding chr3:49568306 chr3:49568307 synonymous SNV . 0 22 hm5C_associated_SNPs_34519 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34311 DeepMRMD:1;iRNA_m5C:0.999536712157815 34312 chr16 68071946 68071946 1 + C T SKCM 68071957 + 68071937 68071977 41 ATAGCCTCTCTCTGTGTTACCATAATAAGCTAATCCTGGCC ATAGCCTCTTTCTGTGTTACCATAATAAGCTAATCCTGGCC < 41bp 1 0.345112866505006 1 0.246072113513947 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68071957 chr16:68071946 nonsynonymous SNV 0.913 1 10 hm5C_associated_SNPs_34520 0 0 0 0 1 Ribosome 1 0.500231643921332 1 0.999536712157336 hm5C_site_34312 DeepMRMD:1;iRNA_m5C:0.999536712157336 34313 chr1 94012458 94012458 1 + G A SKCM 94012454 + 94012434 94012474 41 AGAATCCACAAATGGGGGATCCAGGGAGTTTGCAGCCTAAA AGAATCCACAAATGGGGGATCCAGAGAGTTTGCAGCCTAAA < 41bp 1 0.435559019327714 1 0.67816823720932 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:94012454 chr1:94012458 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_34521 0 0 1 0 2 Nucleus 1 0.500231643921092 0.64366352558136 0.999536712157815 hm5C_site_34313 DeepMRMD:0.64366352558136;iRNA_m5C:0.999536712157815 34314 chr12 6939891 6939891 1 + C T SKCM 6939910 + 6939890 6939930 41 TCCTTCCCAACCAGCTGAGGCGGCTACATGAGGCCCATGCT TTCTTCCCAACCAGCTGAGGCGGCTACATGAGGCCCATGCT < 41bp 1 0.228945460867428 1 0.703923344612122 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6939910 chr12:6939891 synonymous SNV . 0 2 hm5C_associated_SNPs_34522 0 0 1 0 1 membrane 1 0.500231643921092 0.592153310775756 0.999536712157815 hm5C_site_34314 DeepMRMD:0.592153310775756;iRNA_m5C:0.999536712157815 34315 chr18 29116337 29116337 1 + C T SKCM 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCTGTCATTGACAAACCACCTGGCATGGCAGAAAAA < 41bp 1 0.139041854067266 1 0.153091311454773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116337 synonymous SNV . 0 8 hm5C_associated_SNPs_34523 0 0 1 0 1 Endoplasmic reticulum 1 0.500231626496302 1 0.999536747007395 hm5C_site_34315 DeepMRMD:1;iRNA_m5C:0.999536747007395 34316 chr18 29116337 29116337 1 + C T SKCM 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCTGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA < 41bp 1 0.43370387597603 1 0.157059371471405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116337 synonymous SNV . 0 4 hm5C_associated_SNPs_34524 0 0 1 0 1 Endoplasmic reticulum 1 0.500231668170673 1 0.999536663658654 hm5C_site_34316 DeepMRMD:1;iRNA_m5C:0.999536663658654 34317 chr17 73484956 73484956 1 + C T SKCM 73484970 + 73484950 73484990 41 GCTTTTCCGTGTCCTTGAGACCCCTGTGATTGACAACATCA GCTTTTTCGTGTCCTTGAGACCCCTGTGATTGACAACATCA < 41bp 1 0.136371244034238 1 0.0456604063510895 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73484970 chr17:73484956 synonymous SNV . 0 7 hm5C_associated_SNPs_34525 0 0 0 0 1 Cytosol 1 0.500231643895612 1 0.999536712208775 hm5C_site_34317 DeepMRMD:1;iRNA_m5C:0.999536712208775 34318 chr16 5121918 5121918 1 + G A SKCM 5121938 + 5121918 5121958 41 GGAAGCGCTGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTA AGAAGCGCTGGCGCCGGGGGCGGGCGGCCCGGCATGTAGTA < 41bp 1 0.632159352618447 1 0.855635285377502 experiment 0.735681294763106 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5121938 chr16:5121918 stopgain 0.750 1 1 hm5C_associated_SNPs_34526 0 0 1 0 0 Ribosome 1 0.500231643922247 0.288729429244996 0.999536712155506 hm5C_site_34318 DeepMRMD:0.288729429244996;iRNA_m5C:0.999536712155506 34319 chr7 142459675 142459675 1 + A T SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAT < 41bp 1 0.658225131543257 1 0.134485155344009 experiment 0.683549736913487 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459675 nonsynonymous SNV 0.130 2 41 hm5C_associated_SNPs_34527 0 0 0 0 1 Cytosol 1 0.500231642402209 1 0.999536715195583 hm5C_site_34319 DeepMRMD:1;iRNA_m5C:0.999536715195583 34320 chr7 142459675 142459675 1 + A T SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAGCACAACATCGAAGTCCTGGAGGGGATTGAGCAGTT < 41bp 1 0.551477969600737 1 0.370010793209076 experiment 0.897044060798527 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459675 nonsynonymous SNV 0.130 2 32 hm5C_associated_SNPs_34529 0 0 0 0 1 Cytosol 1 0.500231639683874 1 0.999536720632253 hm5C_site_34320 DeepMRMD:1;iRNA_m5C:0.999536720632253 34321 chr7 142459675 142459675 1 + A T SKCM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGATTGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.513433383440992 1 0.358984529972076 experiment 0.973133233118015 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459675 nonsynonymous SNV 0.130 2 16 hm5C_associated_SNPs_34530 0 0 0 0 1 Cytosol 1 0.500231644251547 1 0.999536711496907 hm5C_site_34321 DeepMRMD:1;iRNA_m5C:0.999536711496907 34322 chr7 142459675 142459675 1 + A T SKCM 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGATTGAGCAGTTCATCAATGCAGCCAAGATCAT < 41bp 1 0.630558006324745 1 0.0420269370079041 experiment 0.738883987350511 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459675 nonsynonymous SNV 0.130 2 11 hm5C_associated_SNPs_34531 0 0 0 0 1 Cytosol 1 0.500231745676702 1 0.999536508646597 hm5C_site_34322 DeepMRMD:1;iRNA_m5C:0.999536508646597 34323 chr7 142459675 142459675 1 + A T SKCM 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGATTGAGCAGTTCATCAATGCAGCCAAGATCATCCG < 41bp 1 0.654211153571744 1 0.459728062152863 experiment 0.691577692856513 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459675 nonsynonymous SNV 0.130 2 8 hm5C_associated_SNPs_34532 0 0 0 0 1 Cytosol 1 0.500231520724765 1 0.999536958550471 hm5C_site_34323 DeepMRMD:1;iRNA_m5C:0.999536958550471 34324 chr7 142459675 142459675 1 + A T SKCM 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GATTGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC < 41bp 1 0.588420499798014 1 0.0247056484222412 experiment 0.823159000403972 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459675 nonsynonymous SNV 0.130 2 3 hm5C_associated_SNPs_34533 0 0 0 0 1 Cytosol 1 0.500231643920819 1 0.999536712158362 hm5C_site_34324 DeepMRMD:1;iRNA_m5C:0.999536712158362 34325 chr8 21859730 21859730 1 + G A SKCM 21859735 + 21859715 21859755 41 ACACCCCTGAACCAGGAGAGCGACCGCTTTCTGCACATCAT ACACCCCTGAACCAGAAGAGCGACCGCTTTCTGCACATCAT < 41bp 1 0.30171275461022 1 0.139881819486618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859735 chr8:21859730 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_34535 0 0 1 0 1 Cytosol 1 0.500231644290512 1 0.999536711418976 hm5C_site_34325 DeepMRMD:1;iRNA_m5C:0.999536711418976 34326 chr5 33455743 33455743 1 + C T SKCM 33455756 + 33455736 33455776 41 AGAAAATCATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA AGAAAATTATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA < 41bp 1 0.337319175313694 1 0.452490925788879 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33455756 chr5:33455743 synonymous SNV . 0 8 hm5C_associated_SNPs_34536 0 0 1 0 2 Nucleus 1 0.500231928665374 1 0.999536142669252 hm5C_site_34326 DeepMRMD:1;iRNA_m5C:0.999536142669252 34327 chr19 1055316 1055316 1 + C T SKCM 1055304 + 1055284 1055324 41 AGAACCTGACAGGCCGGAACCTGTCTGACTTCCTGGTCAAG AGAACCTGACAGGCCGGAACCTGTCTGACTTCTTGGTCAAG < 41bp 1 0.116798352735852 1 0.0912027955055237 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1055304 chr19:1055316 synonymous SNV . 0 33 hm5C_associated_SNPs_34537 0 0 1 0 1 Endoplasmic reticulum 1 0.500231614902749 1 0.999536770194502 hm5C_site_34327 DeepMRMD:1;iRNA_m5C:0.999536770194502 34328 chr15 45353347 45353347 1 + C T SKCM 45353327 + 45353307 45353347 41 ATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCC ATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCT < 41bp 1 0.188438299045636 1 0.384788990020752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SORD ENSG00000140263 CDS Human protein_coding chr15:45353327 chr15:45353347 synonymous SNV . 0 41 hm5C_associated_SNPs_34538 0 0 1 0 2 Ribosome 1 0.500231643921035 1 0.99953671215793 hm5C_site_34328 DeepMRMD:1;iRNA_m5C:0.99953671215793 34329 chr5 14280515 14280515 1 + G A SKCM 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAAACTCATTTCCTATCTAGCCTGT < 41bp 1 0.328946648864266 1 0.11011478304863 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280515 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_34539 0 0 1 0 2 Nucleus 1 0.500231644370096 1 0.999536711259809 hm5C_site_34329 DeepMRMD:1;iRNA_m5C:0.999536711259809 34330 chrX 77373639 77373639 1 + G A SKCM 77373646 + 77373626 77373666 41 CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG CTTGGAGAGCCCAAAGCGACCCTTCCTGGCCATCCTGGGCG < 41bp 1 0.0560102602465636 1 0.0578645467758179 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373646 chrX:77373639 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_34540 0 0 1 2 2 Ribosome 1 0.500231644360484 1 0.999536711279032 hm5C_site_34330 DeepMRMD:1;iRNA_m5C:0.999536711279032 34331 chr14 100996347 100996347 1 + C T SKCM 100996330 + 100996310 100996350 41 TATCACCCCGTGCTGCCCTCCGTCCTCGCCACCTGCTCCTG TATCACCCCGTGCTGCCCTCCGTCCTCGCCACCTGCTTCTG < 41bp 1 0.182770063525522 1 0.705261051654816 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100996330 chr14:100996347 nonsynonymous SNV 0.998 2 38 hm5C_associated_SNPs_34541 0 0 1 0 0 chromatin 1 0.500231653689304 0.589477896690368 0.999536692621393 hm5C_site_34331 DeepMRMD:0.589477896690368;iRNA_m5C:0.999536692621393 34332 chr6 33656527 33656527 1 + C T SKCM 33656530 + 33656510 33656550 41 AACATCATCATTGCCTTCTTCTACCCTTACATGGAGGGCGC AACATCATCATTGCCTTTTTCTACCCTTACATGGAGGGCGC < 41bp 1 0.172969993353041 1 0.261138379573822 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33656530 chr6:33656527 synonymous SNV . 0 18 hm5C_associated_SNPs_34542 0 0 1 0 2 Endoplasmic reticulum 1 0.500231649227727 1 0.999536701544546 hm5C_site_34332 DeepMRMD:1;iRNA_m5C:0.999536701544546 34333 chrX 114877744 114877744 1 + C T SKCM 114877725 + 114877705 114877745 41 TGATGTTGTCAGTGGAAACCCCAAACTCAACTTAGCTTTCG TGATGTTGTCAGTGGAAACCCCAAACTCAACTTAGCTTTTG < 41bp 1 0.438047872238359 1 0.250882804393768 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114877725 chrX:114877744 synonymous SNV . 0 40 hm5C_associated_SNPs_34543 0 0 1 1 1 Nucleus 1 0.500231658739625 1 0.999536682520751 hm5C_site_34333 DeepMRMD:1;iRNA_m5C:0.999536682520751 34334 chr17 16342728 16342728 1 + G A SKCM 16342711 + 16342691 16342731 41 CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGAGTA < 41bp 1 0.368435583593854 1 0.169041395187378 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342711 chr17:16342728 . . 0 38 hm5C_associated_SNPs_34544 0 0 1 0 2 Nucleus 1 0.500231643920685 1 0.99953671215863 hm5C_site_34334 DeepMRMD:1;iRNA_m5C:0.99953671215863 34335 chr17 16342728 16342728 1 + G A SKCM 16342716 + 16342696 16342736 41 CACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTAAGTTG CACAGTGGGGGTGTGCAAACCCGAGAGAACTGAGTAAGTTG < 41bp 1 0.600298851082769 1 0.547478497028351 experiment 0.799402297834463 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342716 chr17:16342728 . . 0 33 hm5C_associated_SNPs_34545 0 0 1 0 2 Nucleus 1 0.50023162830022 0.905043005943298 0.99953674339956 hm5C_site_34335 DeepMRMD:0.905043005943298;iRNA_m5C:0.99953674339956 34336 chr12 112579928 112579928 1 + C T SKCM 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAATAGAGGCTAACAGCCCCCCAAAGAGGGTGGTGAAGAGA < 41bp 1 0.296941423952046 1 0.383893102407455 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579928 stopgain 0.092 0 11 hm5C_associated_SNPs_34546 0 0 1 1 1 Cytosol 1 0.500231643917228 1 0.999536712165545 hm5C_site_34336 DeepMRMD:1;iRNA_m5C:0.999536712165545 34337 chr17 16342727 16342727 1 + G A SKCM 16342711 + 16342691 16342731 41 CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTA CGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTAGGTA < 41bp 1 0.350898470044131 1 0.211453765630722 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342711 chr17:16342727 . . 0 37 hm5C_associated_SNPs_34547 0 0 1 0 2 Nucleus 1 0.500231642572987 1 0.999536714854026 hm5C_site_34337 DeepMRMD:1;iRNA_m5C:0.999536714854026 34338 chr17 16342727 16342727 1 + G A SKCM 16342716 + 16342696 16342736 41 CACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTAAGTTG CACAGTGGGGGTGTGCAAACCCGAGAGAACTAGGTAAGTTG < 41bp 1 0.593461784406094 1 0.603725492954254 experiment 0.813076431187811 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LRRC75A-AS1 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342716 chr17:16342727 . . 0 32 hm5C_associated_SNPs_34548 0 0 1 0 2 Nucleus 1 0.500229485444538 0.792549014091492 0.999541029110924 hm5C_site_34338 DeepMRMD:0.792549014091492;iRNA_m5C:0.999541029110924 34339 chrX 73046878 73046878 1 + C T SKCM 73046871 - 73046851 73046891 41 GAGGACTAAGATGGAAAGCCCATGTTCCAAGATAGATAGAA GAGGACTAAGATGAAAAGCCCATGTTCCAAGATAGATAGAA < 41bp 1 0.0809431640738863 1 0.0677401721477509 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046871 chrX:73046878 . . 0 14 hm5C_associated_SNPs_34549 0 0 1 0 0 unknown 1 0.500231642592896 1 0.999536714814208 hm5C_site_34339 DeepMRMD:1;iRNA_m5C:0.999536714814208 34340 chrX 73046878 73046878 1 + C T SKCM 73046873 - 73046853 73046893 41 CCGAGGACTAAGATGGAAAGCCCATGTTCCAAGATAGATAG CCGAGGACTAAGATGAAAAGCCCATGTTCCAAGATAGATAG < 41bp 1 0.147979556369712 1 0.0549954771995544 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046873 chrX:73046878 . . 0 16 hm5C_associated_SNPs_34550 0 0 1 0 0 unknown 1 0.500231643920385 1 0.99953671215923 hm5C_site_34340 DeepMRMD:1;iRNA_m5C:0.99953671215923 34341 chrX 73046878 73046878 1 + C T SKCM 73046893 - 73046873 73046913 41 GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGAAAAGC < 41bp 1 0.186956941077545 1 0.450756698846817 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046893 chrX:73046878 . . 0 36 hm5C_associated_SNPs_34551 0 0 1 0 0 unknown 1 0.500226608423893 1 0.999546783152214 hm5C_site_34341 DeepMRMD:1;iRNA_m5C:0.999546783152214 34342 chrX 73046878 73046878 1 + C T SKCM 73046894 - 73046874 73046914 41 AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGAAAAG < 41bp 1 0.401909317860284 1 0.121335327625275 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046894 chrX:73046878 . . 0 37 hm5C_associated_SNPs_34552 0 0 1 0 0 unknown 1 0.500231643920182 1 0.999536712159636 hm5C_site_34342 DeepMRMD:1;iRNA_m5C:0.999536712159636 34343 chr19 38655330 38655330 1 + C T SKCM 38655333 + 38655313 38655353 41 GGCCAAGGCTCCACGGCCCGCCAAGCCACACAAGCCCCCTG GGCCAAGGCTCCACGGCTCGCCAAGCCACACAAGCCCCCTG < 41bp 1 0.189011289266422 1 0.413352191448212 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38655333 chr19:38655330 nonsynonymous SNV 0.165 0 18 hm5C_associated_SNPs_34553 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34343 DeepMRMD:1;iRNA_m5C:0.999536712157815 34344 chr14 55818527 55818527 1 + C T SKCM 55818536 + 55818516 55818556 41 ATTTTAAACTCCTGTGAAGACCCAGTTCCAGGGATGTTGTT ATTTTAAACTCTTGTGAAGACCCAGTTCCAGGGATGTTGTT < 41bp 1 0.29804903250001 1 0.0718779563903809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FBXO34 ENSG00000178974 CDS Human protein_coding chr14:55818536 chr14:55818527 synonymous SNV . 0 12 hm5C_associated_SNPs_34554 0 0 1 0 0 Nucleus 1 0.500231643890718 1 0.999536712218563 hm5C_site_34344 DeepMRMD:1;iRNA_m5C:0.999536712218563 34345 chr14 65209912 65209912 1 + C T SKCM 65209911 + 65209891 65209931 41 ACCTTCAGCTGGCCCGACGTCCGTGAGCTCTGCTCCAAGTA ACCTTCAGCTGGCCCGACGTCTGTGAGCTCTGCTCCAAGTA < 41bp 1 0.491179856704049 1 0.309542298316956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65209911 chr14:65209912 nonsynonymous SNV 0.498 4 22 hm5C_associated_SNPs_34555 0 0 1 0 0 Nucleus 1 0.500252843329576 1 0.999494313340848 hm5C_site_34345 DeepMRMD:1;iRNA_m5C:0.999494313340848 34346 chr19 42729905 42729905 1 + C T SKCM 42729916 + 42729896 42729936 41 CTCCAAGTCCTTTGCCTCAGCTTCCCGGCTGTCCCGGCACC CTCCAAGTCTTTTGCCTCAGCTTCCCGGCTGTCCCGGCACC < 41bp 1 0.167746814179853 1 0.0725633800029755 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF526 ENSG00000167625 CDS Human protein_coding chr19:42729916 chr19:42729905 synonymous SNV . 0 10 hm5C_associated_SNPs_34556 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_34346 DeepMRMD:1;iRNA_m5C:0.999536712157815 34347 chrX 48663912 48663912 1 + C T SKCM 48663902 + 48663882 48663922 41 GAGCAACTGATCCAGGAGGGCCTCCTAGATCGCTGCGTGTC GAGCAACTGATCCAGGAGGGCCTCCTAGATTGCTGCGTGTC < 41bp 1 0.0566647524083019 1 0.0460980236530304 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48663902 chrX:48663912 nonsynonymous SNV 0.990 4 31 hm5C_associated_SNPs_34557 0 0 1 0 2 Cytosol 1 0.500231643921047 1 0.999536712157905 hm5C_site_34347 DeepMRMD:1;iRNA_m5C:0.999536712157905 34348 chr2 220350099 220350099 1 + G A SKCM 220350113 + 220350093 220350133 41 CCGCTGGGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT CCGCTGAGGCTTCTCTCGGCCGCGGAAGGACAAGGGGTTAT < 41bp 1 0.453668693900093 1 0.659614741802216 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220350113 chr2:220350099 stopgain 0.806 0 7 hm5C_associated_SNPs_34558 0 0 0 0 1 Nucleus 1 0.500231643921093 0.680770516395568 0.999536712157815 hm5C_site_34348 DeepMRMD:0.680770516395568;iRNA_m5C:0.999536712157815 34349 chr4 57181806 57181806 1 + C T SKCM 57181825 + 57181805 57181845 41 CCGCCAGTCAATGCAAAGTTCTCTATTATGCCTGCCTGGCA CTGCCAGTCAATGCAAAGTTCTCTATTATGCCTGCCTGGCA < 41bp 1 0.51523014775434 1 0.901697635650635 experiment 0.969539704491321 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57181825 chr4:57181806 nonsynonymous SNV 0.137 0 2 hm5C_associated_SNPs_34559 0 0 0 0 0 cytosol 1 0.500231020290667 0.19660472869873 0.999537959418667 hm5C_site_34349 DeepMRMD:0.19660472869873;iRNA_m5C:0.999537959418667 34350 chr20 62373342 62373342 1 + C T SKCM 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCTGTCACC < 41bp 1 0.0782550053035241 1 0.0864595472812653 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373342 nonsynonymous SNV 0.394 3 35 hm5C_associated_SNPs_34560 0 0 1 0 1 Cytosol 1 0.500231643923988 1 0.999536712152024 hm5C_site_34350 DeepMRMD:1;iRNA_m5C:0.999536712152024 34351 chr1 154207139 154207139 1 + G A SKCM 154207147 + 154207127 154207167 41 ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGGGA ACGGAATCCAATAAGGAAGGCAAAGAAAATCGAGACCGGGA < 41bp 1 0.344162184985096 1 0.240527182817459 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207147 chr1:154207139 nonsynonymous SNV 0.967 1 13 hm5C_associated_SNPs_34563 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34351 DeepMRMD:1;iRNA_m5C:0.999536712157815 34352 chr5 156786131 156786131 1 + A T SKCM 156786136 + 156786116 156786156 41 CTGTGGTCATGGAGGAACTGCTAAAGATTGTGAAGAGCTTG CTGTGGTCATGGAGGTACTGCTAAAGATTGTGAAGAGCTTG < 41bp 1 0.343141791303657 1 0.336810827255249 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156786136 chr5:156786131 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_34564 0 0 1 0 1 Cytosol 1 0.500231643925035 1 0.999536712149929 hm5C_site_34352 DeepMRMD:1;iRNA_m5C:0.999536712149929 34353 chrX 153533723 153533723 1 + A G SKCM 153533726 + 153533706 153533746 41 TCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG TCTACATCATGAGGTACGAGCAGTCAGATCCAGAGAATCCG < 41bp 1 0.125706676409636 1 0.189679980278015 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533726 chrX:153533723 nonsynonymous SNV 0.023 1 18 hm5C_associated_SNPs_34565 0 0 0 0 3 exosome 1 0.500231643921927 1 0.999536712156146 hm5C_site_34353 DeepMRMD:1;iRNA_m5C:0.999536712156146 34354 chrX 84502582 84502582 1 + G A SKCM 84502590 + 84502570 84502610 41 TTGCTAAGTATGGATTCAGGCGGTGGAAGTCTTGGATTGCA TTGCTAAGTATGAATTCAGGCGGTGGAAGTCTTGGATTGCA < 41bp 1 0.565570493389037 1 0.603775858879089 experiment 0.868859013221926 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502590 chrX:84502582 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_34566 0 0 1 0 2 cytosol 1 0.500231643921101 0.792448282241822 0.999536712157798 hm5C_site_34354 DeepMRMD:0.792448282241822;iRNA_m5C:0.999536712157798 34355 chr1 54665994 54665994 1 + G A SKCM 54665990 + 54665970 54666010 41 CGGCCTTGGGGGCTTCGGGGCCCCGAGACGCGGGGCGTATG CGGCCTTGGGGGCTTCGGGGCCCCAAGACGCGGGGCGTATG < 41bp 1 0.576066616688399 1 0.254242569208145 experiment 0.847866766623203 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54665990 chr1:54665994 synonymous SNV . 0 25 hm5C_associated_SNPs_34567 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34355 DeepMRMD:1;iRNA_m5C:0.999536712157815 34356 chr1 54665994 54665994 1 + G A SKCM 54665992 + 54665972 54666012 41 GCCTTGGGGGCTTCGGGGCCCCGAGACGCGGGGCGTATGAG GCCTTGGGGGCTTCGGGGCCCCAAGACGCGGGGCGTATGAG < 41bp 1 0.379048796119417 1 0.257609516382217 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54665992 chr1:54665994 synonymous SNV . 0 23 hm5C_associated_SNPs_34568 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34356 DeepMRMD:1;iRNA_m5C:0.999536712157815 34357 chr7 150769181 150769181 1 + C T SKCM 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATTTCACT < 41bp 1 0.0547109386127748 1 0.0547627508640289 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769181 synonymous SNV . 0 36 hm5C_associated_SNPs_34569 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_34357 DeepMRMD:1;iRNA_m5C:0.999536712157815 34358 chr2 171822314 171822314 1 + C T SKCM 171822305 + 171822285 171822325 41 CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTCCATGCCT CCGTTTTTGTCCTAGGTCTGCCACCTCTTTCTTCCATGCCT < 41bp 1 0.112016495861068 1 0.0827114582061768 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171822305 chr2:171822314 nonsynonymous SNV 0.907 0 30 hm5C_associated_SNPs_34570 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34358 DeepMRMD:1;iRNA_m5C:0.999536712157815 34359 chr19 50548282 50548282 1 + C T SKCM 50548302 + 50548282 50548322 41 CGACCACAGCCAGCAGGATTCTGTTCAGGAAGGGGAGAAAC TGACCACAGCCAGCAGGATTCTGTTCAGGAAGGGGAGAAAC < 41bp 1 0.315574490979433 1 0.0886296927928925 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50548302 chr19:50548282 synonymous SNV . 0 1 hm5C_associated_SNPs_34571 0 0 1 0 0 Cytosol 1 0.500231350143988 1 0.999537299712024 hm5C_site_34359 DeepMRMD:1;iRNA_m5C:0.999537299712024 34360 chr16 29912768 29912768 1 + G A SKCM 29912748 + 29912728 29912768 41 GTGAGCCGGCGGCTTCGGGCCTACGCAAGGCGCTACTCCTG GTGAGCCGGCGGCTTCGGGCCTACGCAAGGCGCTACTCCTA < 41bp 1 0.644898200575897 1 0.366707026958466 experiment 0.710203598848207 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASPHD1 ENSG00000174939 CDS Human protein_coding chr16:29912748 chr16:29912768 stopgain 1.000 1 41 hm5C_associated_SNPs_34572 0 0 1 0 0 nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_34360 DeepMRMD:1;iRNA_m5C:0.999536712157812 34361 chr19 10561318 10561318 1 + C T SKCM 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCTA < 41bp 1 0.0410355999008092 1 0.12400233745575 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561318 synonymous SNV . 0 40 hm5C_associated_SNPs_34573 0 0 0 0 2 chromatin 1 0.500231643920951 1 0.999536712158098 hm5C_site_34361 DeepMRMD:1;iRNA_m5C:0.999536712158098 34362 chrX 49853375 49853375 1 + C T SKCM 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CCTCTTTATTCCTAGCATGGCTGTTGGTGCTATAGCAGGTC < 41bp 1 0.163073423632831 1 0.29068386554718 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853375 synonymous SNV . 0 10 hm5C_associated_SNPs_34574 0 0 0 0 1 Nucleus 1 0.50023164392288 1 0.99953671215424 hm5C_site_34362 DeepMRMD:1;iRNA_m5C:0.99953671215424 34363 chr4 77660171 77660171 1 + G A SKCM 77660170 + 77660150 77660190 41 CTGGCATCTCTGGCCGGGAGCGTTCAGGCTCCATGGACAAT CTGGCATCTCTGGCCGGGAGCATTCAGGCTCCATGGACAAT < 41bp 1 0.0121937384252209 1 0.0812034606933594 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660170 chr4:77660171 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_34575 0 0 0 0 0 Ribosome 1 0.500231643966193 1 0.999536712067615 hm5C_site_34363 DeepMRMD:1;iRNA_m5C:0.999536712067615 34364 chr4 77660171 77660171 1 + G A SKCM 77660180 + 77660160 77660200 41 TGGCCGGGAGCGTTCAGGCTCCATGGACAATACTTCTGCTC TGGCCGGGAGCATTCAGGCTCCATGGACAATACTTCTGCTC < 41bp 1 0.0851705733049698 1 0.186172187328339 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660180 chr4:77660171 nonsynonymous SNV 0.007 0 12 hm5C_associated_SNPs_34576 0 0 0 0 0 Ribosome 1 0.500232110044823 1 0.999535779910354 hm5C_site_34364 DeepMRMD:1;iRNA_m5C:0.999535779910354 34365 chr5 172421790 172421790 1 + C T SKCM 172421784 + 172421764 172421804 41 TTTTTTTTTTTTAGAGTTATCATTACCATGTTGGTGACCTG TTTTTTTTTTTTAGAGTTATCATTACTATGTTGGTGACCTG < 41bp 1 0.220705074546913 1 0.361826181411743 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ATP6V0E1 ENSG00000113732 CDS Human protein_coding chr5:172421784 chr5:172421790 synonymous SNV . 0 27 hm5C_associated_SNPs_34577 0 0 1 0 1 Ribosome 1 0.500231643921002 1 0.999536712157995 hm5C_site_34365 DeepMRMD:1;iRNA_m5C:0.999536712157995 34366 chr1 162040006 162040006 1 + G A SKCM 162040009 + 162039989 162040029 41 AACCTTGTGGACGATGGGCACGACCTGCGGATCCCCTTGCA AACCTTGTGGACGATGGACACGACCTGCGGATCCCCTTGCA < 41bp 1 0.420540945007372 1 0.460889011621475 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162040009 chr1:162040006 synonymous SNV . 0 18 hm5C_associated_SNPs_34578 0 0 1 0 1 cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_34366 DeepMRMD:1;iRNA_m5C:0.99953671215782 34367 chr11 68213994 68213994 1 + C T SKCM 68213986 + 68213966 68214006 41 CTCTTCAAACATTCCGGCCACTGCGAGACCGTACAGGTAGG CTCTTCAAACATTCCGGCCACTGCGAGATCGTACAGGTAGG < 41bp 1 0.330850200466586 1 0.164480209350586 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68213986 chr11:68213994 nonsynonymous SNV 0.065 1 29 hm5C_associated_SNPs_34579 0 0 1 0 2 Endoplasmic reticulum 1 0.500231432416251 1 0.999537135167498 hm5C_site_34367 DeepMRMD:1;iRNA_m5C:0.999537135167498 34368 chr8 42977919 42977919 1 + C T SKCM 42977935 + 42977915 42977955 41 GACTCCCTCAGAAAGACCCACTGCCCAGGACGTTCTGGAGA GACTTCCTCAGAAAGACCCACTGCCCAGGACGTTCTGGAGA < 41bp 1 0.26917857469145 1 0.0798466801643372 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POMK ENSG00000185900 CDS Human protein_coding chr8:42977935 chr8:42977919 nonsynonymous SNV 0.851 1 5 hm5C_associated_SNPs_34580 0 0 1 0 0 Ribosome 1 0.500231891719525 1 0.99953621656095 hm5C_site_34368 DeepMRMD:1;iRNA_m5C:0.99953621656095 34369 chr14 97002296 97002296 1 + C T SKCM 97002283 + 97002263 97002303 41 ATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAA ATACCCACAACAGAACTCCACGTACAATGTGTCTGTTTCAA < 41bp 1 0.0907260717416762 1 0.0719242691993713 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97002283 chr14:97002296 synonymous SNV . 0 34 hm5C_associated_SNPs_34581 0 0 1 0 2 Ribosome 1 0.500231519283701 1 0.999536961432597 hm5C_site_34369 DeepMRMD:1;iRNA_m5C:0.999536961432597 34370 chr20 57289638 57289638 1 + C T SKCM 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAACAGCCCCAGCTTCTGTGCTGGCCTC < 41bp 1 0.397442745765384 1 0.390626817941666 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289638 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_34582 0 0 1 0 2 cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_34370 DeepMRMD:1;iRNA_m5C:0.999536712157816 34371 chr15 99672074 99672074 1 + C T SKCM 99672066 + 99672046 99672086 41 GCAGCGAGCCCGACCGGAGCCAGCCGGTCTGTGAGGCATGT GCAGCGAGCCCGACCGGAGCCAGCCGGTTTGTGAGGCATGT < 41bp 1 0.391160345406026 1 0.379524767398834 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99672066 chr15:99672074 nonsynonymous SNV 0.098 2 29 hm5C_associated_SNPs_34583 0 0 0 0 0 exosome 1 0.50023168118762 1 0.99953663762476 hm5C_site_34371 DeepMRMD:1;iRNA_m5C:0.99953663762476 34372 chr22 31658772 31658772 1 + C T SKCM 31658771 + 31658751 31658791 41 GGGGACACTGAGGAGACGTTCCCTAAGGTGCCACCTCCCAC GGGGACACTGAGGAGACGTTCTCTAAGGTGCCACCTCCCAC < 41bp 1 0.663753158419088 1 0.614999830722809 experiment 0.672493683161825 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658771 chr22:31658772 synonymous SNV . 0 22 hm5C_associated_SNPs_34584 0 0 1 0 1 Cytosol 1 0.5002316438953 0.770000338554382 0.999536712209401 hm5C_site_34372 DeepMRMD:0.770000338554382;iRNA_m5C:0.999536712209401 34373 chr11 61503211 61503211 1 + G A SKCM 61503225 + 61503205 61503245 41 CCCAAGGATGCCCTGACTGACCTGACGGGTGATGCTGAGCG CCCAAGAATGCCCTGACTGACCTGACGGGTGATGCTGAGCG < 41bp 1 0.260399916514512 1 0.10739666223526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503225 chr11:61503211 nonsynonymous SNV 0.840 4 7 hm5C_associated_SNPs_34585 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643747499 1 0.999536712505001 hm5C_site_34373 DeepMRMD:1;iRNA_m5C:0.999536712505001 34374 chr16 29708339 29708339 1 + C G SKCM 29708327 + 29708307 29708347 41 TGCCCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACT TGCCCAGCAGGCGGTGCGGGCGGCCAGACAGGGGGCTGACT < 41bp 1 0.393921498141035 1 0.470549643039703 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708327 chr16:29708339 nonsynonymous SNV 0.003 0 33 hm5C_associated_SNPs_34586 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34374 DeepMRMD:1;iRNA_m5C:0.999536712157815 34375 chr16 29708339 29708339 1 + C G SKCM 29708330 + 29708310 29708350 41 CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTCA CCAGCAGGCGGTGCGGGCGGCCAGACAGGGGGCTGACTTCA < 41bp 1 0.46118756245409 1 0.275184988975525 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708330 chr16:29708339 nonsynonymous SNV 0.003 0 30 hm5C_associated_SNPs_34587 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644526398 1 0.999536710947204 hm5C_site_34375 DeepMRMD:1;iRNA_m5C:0.999536710947204 34376 chr10 71855426 71855426 1 + G A SKCM 71855433 + 71855413 71855453 41 TCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG TCCTTAACCCAGAATGACATCAGCCATATTGGCTCCATGAG < 41bp 1 0.372053187466491 1 0.191115975379944 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71855433 chr10:71855426 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_34588 0 0 1 2 2 Ribosome 1 0.500231643785993 1 0.999536712428013 hm5C_site_34376 DeepMRMD:1;iRNA_m5C:0.999536712428013 34377 chr22 24573545 24573545 1 + C T SKCM 24573547 + 24573527 24573567 41 TGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCT TGAGACTCAGCCCCTGAGTTCTCCCCCAACAGCTGCCAGCT < 41bp 1 0.125642529942331 1 0.307856827974319 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573547 chr22:24573545 synonymous SNV . 0 19 hm5C_associated_SNPs_34589 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34377 DeepMRMD:1;iRNA_m5C:0.999536712157815 34378 chr22 24573545 24573545 1 + C T SKCM 24573549 + 24573529 24573569 41 AGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCC AGACTCAGCCCCTGAGTTCTCCCCCAACAGCTGCCAGCTCC < 41bp 1 0.188604654822213 1 0.416711717844009 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573549 chr22:24573545 synonymous SNV . 0 17 hm5C_associated_SNPs_34590 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34378 DeepMRMD:1;iRNA_m5C:0.999536712157815 34379 chr22 24573545 24573545 1 + C T SKCM 24573550 + 24573530 24573570 41 GACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCA GACTCAGCCCCTGAGTTCTCCCCCAACAGCTGCCAGCTCCA < 41bp 1 0.21300043188166 1 0.342097461223602 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573550 chr22:24573545 synonymous SNV . 0 16 hm5C_associated_SNPs_34591 0 0 1 0 1 Cytosol 1 0.500232200378 1 0.999535599244001 hm5C_site_34379 DeepMRMD:1;iRNA_m5C:0.999535599244001 34380 chr22 24573545 24573545 1 + C T SKCM 24573551 + 24573531 24573571 41 ACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCAA ACTCAGCCCCTGAGTTCTCCCCCAACAGCTGCCAGCTCCAA < 41bp 1 0.243131515691459 1 0.179991394281387 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573551 chr22:24573545 synonymous SNV . 0 15 hm5C_associated_SNPs_34592 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34380 DeepMRMD:1;iRNA_m5C:0.999536712157815 34381 chr2 102959740 102959740 1 + G A SKCM 102959733 + 102959713 102959753 41 ACAGGTTGCTTTCTTAGTTTCAGCAATGGGCTGGCTTGTCT ACAGGTTGCTTTCTTAGTTTCAGCAATAGGCTGGCTTGTCT < 41bp 1 0.61813798869541 1 0.793157339096069 experiment 0.76372402260918 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102959733 chr2:102959740 nonsynonymous SNV 0.004 0 28 hm5C_associated_SNPs_34593 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643926784 0.413685321807862 0.999536712146432 hm5C_site_34381 DeepMRMD:0.413685321807862;iRNA_m5C:0.999536712146432 34382 chr1 179851738 179851738 1 + C T SKCM 179851757 + 179851737 179851777 41 CCTCAAAATGGCGGCAGCAGCGATGCGCCTGCGTACAGAAC CTTCAAAATGGCGGCAGCAGCGATGCGCCTGCGTACAGAAC < 41bp 1 0.628263313656665 1 0.223260432481766 experiment 0.743473372686671 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TOR1AIP1 ENSG00000143337 CDS Human protein_coding chr1:179851757 chr1:179851738 nonsynonymous SNV 0.999 2 2 hm5C_associated_SNPs_34594 0 0 0 0 0 Endoplasmic reticulum 1 0.50023164392109 1 0.999536712157819 hm5C_site_34382 DeepMRMD:1;iRNA_m5C:0.999536712157819 34383 chr7 154738098 154738098 1 + G T SKCM 154738116 - 154738096 154738136 41 GATGTTCACAATGCAGAGTTCGTTCTGACTGGAGTGCTCAC GATGTTCACAATGCAGAGTTCGTTCTGACTGGAGTGCTAAC < 41bp 1 0.0421322693860903 1 0.0186048448085785 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154738116 chr7:154738098 synonymous SNV . 0 39 hm5C_associated_SNPs_34596 0 0 1 0 1 Cytosol 1 0.500231639526191 1 0.999536720947618 hm5C_site_34383 DeepMRMD:1;iRNA_m5C:0.999536720947618 34384 chr6 43110004 43110004 1 + A T SKCM 43110021 + 43110001 43110041 41 AACATCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT AACTTCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT < 41bp 1 0.0673271849347653 1 0.0580363273620605 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK7 ENSG00000112655 CDS Human protein_coding chr6:43110021 chr6:43110004 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_34597 0 0 1 0 2 Endoplasmic reticulum 1 0.500231441071767 1 0.999537117856466 hm5C_site_34384 DeepMRMD:1;iRNA_m5C:0.999537117856466 34385 chr17 73481988 73481988 1 + C T SKCM 73481976 + 73481956 73481996 41 TGTGGAGAAGCAGCTTCCTCCACCACAGTAACCGCTGCTCC TGTGGAGAAGCAGCTTCCTCCACCACAGTAACTGCTGCTCC < 41bp 1 0.675221379068749 1 0.842195153236389 experiment 0.649557241862503 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73481976 chr17:73481988 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_34598 0 0 1 0 2 Cytosol 1 0.500232181605358 0.315609693527222 0.999535636789285 hm5C_site_34385 DeepMRMD:0.315609693527222;iRNA_m5C:0.999535636789285 34386 chr15 99460079 99460079 1 + C T SKCM 99460083 + 99460063 99460103 41 AAGTCTTTGAGAATTTCCTGCACAACTCCATCTTCGTGCCC AAGTCTTTGAGAATTTTCTGCACAACTCCATCTTCGTGCCC < 41bp 1 0.280794519926295 1 0.113174676895142 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99460083 chr15:99460079 synonymous SNV . 0 17 hm5C_associated_SNPs_34599 0 0 1 0 1 Endoplasmic reticulum 1 0.50023148435796 1 0.99953703128408 hm5C_site_34386 DeepMRMD:1;iRNA_m5C:0.99953703128408 34387 chr12 113379461 113379461 1 + G A SKCM 113379481 + 113379461 113379501 41 GGACCAGAGGGCCCGCCGTGCAGAGATCCTCAGTGAGATGC AGACCAGAGGGCCCGCCGTGCAGAGATCCTCAGTGAGATGC < 41bp 1 0.609926260505963 1 0.355374574661255 experiment 0.780147478988074 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113379481 chr12:113379461 synonymous SNV . 0 1 hm5C_associated_SNPs_34600 0 0 0 0 1 Nucleus 1 0.500231643920237 1 0.999536712159526 hm5C_site_34387 DeepMRMD:1;iRNA_m5C:0.999536712159526 34388 chr9 109689800 109689800 1 + C T SKCM 109689820 + 109689800 109689840 41 CGGACGGTCAAAGGGGTACTCATTCATTATCAGAAGAAGCA TGGACGGTCAAAGGGGTACTCATTCATTATCAGAAGAAGCA < 41bp 1 0.0281185452232186 1 0.124807804822922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109689820 chr9:109689800 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_34602 0 0 1 0 0 exosome 1 0.500231643921074 1 0.999536712157851 hm5C_site_34388 DeepMRMD:1;iRNA_m5C:0.999536712157851 34389 chr11 33667274 33667274 1 + C T SKCM 33667280 + 33667260 33667300 41 ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCCAGGTCT ACATTGACAGAGTTTCTGAGCCCCGGGGCTATTCCAGGTCT < 41bp 1 0.258526580024677 1 0.177140295505524 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33667280 chr11:33667274 nonsynonymous SNV 0.920 0 15 hm5C_associated_SNPs_34603 0 0 0 0 1 exosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_34389 DeepMRMD:1;iRNA_m5C:0.99953671215781 34390 chr17 38151308 38151308 1 + C T SKCM 38151309 + 38151289 38151329 41 GCTCACTCATGCCCTATTTCCTTCTGACTCAAGGTAAGGCT GCTCACTCATGCCCTATTTTCTTCTGACTCAAGGTAAGGCT < 41bp 1 0.342865022861072 1 0.0460131466388702 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38151309 chr17:38151308 synonymous SNV . 0 20 hm5C_associated_SNPs_34604 0 0 1 1 1 Ribosome 1 0.50023165440484 1 0.999536691190319 hm5C_site_34390 DeepMRMD:1;iRNA_m5C:0.999536691190319 34391 chr3 38284240 38284240 1 + C T SKCM 38284259 + 38284239 38284279 41 CCGAGTGAAAGAATCAATATCAAATTCTGAGGTAAGTAATT CTGAGTGAAAGAATCAATATCAAATTCTGAGGTAAGTAATT < 41bp 1 0.115759286916779 1 0.172987163066864 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38284259 chr3:38284240 stopgain 0.995 1 2 hm5C_associated_SNPs_34605 0 0 1 0 2 Ribosome 1 0.500196740159893 1 0.999606519680214 hm5C_site_34391 DeepMRMD:1;iRNA_m5C:0.999606519680214 34392 chr9 35846258 35846258 1 + C T SKCM 35846259 + 35846239 35846279 41 TTCCTTCTCCCTTCAGAGTCCCTGGCCGGCTTCCTCCTCTC TTCCTTCTCCCTTCAGAGTTCCTGGCCGGCTTCCTCCTCTC < 41bp 1 0.263950865592524 1 0.0480385720729828 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35846259 chr9:35846258 nonsynonymous SNV 0.986 0 20 hm5C_associated_SNPs_34606 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_34392 DeepMRMD:1;iRNA_m5C:0.999536712157816 34393 chr16 4431025 4431025 1 + C T SKCM 4431033 + 4431013 4431053 41 GGTGCCCCGAGACGTGCCACCCGACACGGTGGGGCTGTACG GGTGCCCCGAGATGTGCCACCCGACACGGTGGGGCTGTACG < 41bp 1 0.117300174871982 1 0.125093519687653 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control VASN ENSG00000168140 CDS Human protein_coding chr16:4431033 chr16:4431025 synonymous SNV . 0 13 hm5C_associated_SNPs_34607 0 0 1 0 0 nucleus 1 0.500232435082145 1 0.999535129835709 hm5C_site_34393 DeepMRMD:1;iRNA_m5C:0.999535129835709 34394 chr1 114440554 114440554 1 + T C SKCM 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGTGGTGCAGGCTTTCCGAGACCTGGTT < 41bp 1 0.666701302065408 1 0.506517767906189 experiment 0.666597395869184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440554 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_34608 0 0 0 0 2 chromatin 1 0.500231643921389 0.986964464187622 0.999536712157223 hm5C_site_34394 DeepMRMD:0.986964464187622;iRNA_m5C:0.999536712157223 34395 chr9 130197476 130197476 1 + C T SKCM 130197488 + 130197468 130197508 41 GGAAAGTCCAGGAGCCTTGTCCTACTAGGTAAGGAAACTGT GGAAAGTCTAGGAGCCTTGTCCTACTAGGTAAGGAAACTGT < 41bp 1 0.0272525858096019 1 0.149799227714539 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF79 ENSG00000196152 CDS Human protein_coding chr9:130197488 chr9:130197476 synonymous SNV . 0 9 hm5C_associated_SNPs_34610 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_34395 DeepMRMD:1;iRNA_m5C:0.999536712157816 34396 chr12 112926270 112926270 1 + C T SKCM 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCCGGACAGGGATGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.191209225188158 1 0.0260994136333466 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926270 nonsynonymous SNV 0.971 5 17 hm5C_associated_SNPs_34611 7 0 1 0 2 Ribosome 1 0.500231665325624 1 0.999536669348751 hm5C_site_34396 DeepMRMD:1;iRNA_m5C:0.999536669348751 Rasopathy Rasopathy 34397 chr1 874684 874684 1 + C T SKCM 874685 + 874665 874705 41 GCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACC GCTGCCGCGGGAGCTGGGGTCCAGCATGGCCCCGGAGGACC < 41bp 1 0.599975121083715 1 0.625689446926117 experiment 0.800049757832571 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874685 chr1:874684 nonsynonymous SNV 0.013 0 20 hm5C_associated_SNPs_34613 0 0 0 0 1 nucleus 1 0.500231643930094 0.748621106147766 0.999536712139811 hm5C_site_34397 DeepMRMD:0.748621106147766;iRNA_m5C:0.999536712139811 34398 chr1 874684 874684 1 + C T SKCM 874694 + 874674 874714 41 GGAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCC GGAGCTGGGGTCCAGCATGGCCCCGGAGGACCATTACCGCC < 41bp 1 0.649404076116786 1 0.109057426452637 experiment 0.701191847766428 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874694 chr1:874684 nonsynonymous SNV 0.013 0 11 hm5C_associated_SNPs_34614 0 0 0 0 1 nucleus 1 0.500231644450464 1 0.999536711099073 hm5C_site_34398 DeepMRMD:1;iRNA_m5C:0.999536711099073 34399 chr19 45493754 45493754 1 + G A SKCM 45493756 + 45493736 45493776 41 GTCCTCCTCTACATCCTGGACAACGAGACCAACTTCGTGGT GTCCTCCTCTACATCCTGAACAACGAGACCAACTTCGTGGT < 41bp 1 0.518946365786823 1 0.113783627748489 experiment 0.962107268426354 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493756 chr19:45493754 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_34617 0 0 1 0 1 Cytosol 1 0.500231643921155 1 0.999536712157689 hm5C_site_34399 DeepMRMD:1;iRNA_m5C:0.999536712157689 34400 chr19 45493754 45493754 1 + G A SKCM 45493765 + 45493745 45493785 41 TACATCCTGGACAACGAGACCAACTTCGTGGTCCAGGTCAG TACATCCTGAACAACGAGACCAACTTCGTGGTCCAGGTCAG < 41bp 1 0.294213252505011 1 0.0545165836811066 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493765 chr19:45493754 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_34618 0 0 1 0 1 Cytosol 1 0.500231643921097 1 0.999536712157805 hm5C_site_34400 DeepMRMD:1;iRNA_m5C:0.999536712157805 34401 chr7 43664264 43664264 1 + C T SKCM 43664244 + 43664224 43664264 41 TCCAAGAAGGTCATTCTGTGCCTGAAATTAATTCGGATACC TCCAAGAAGGTCATTCTGTGCCTGAAATTAATTCGGATACT < 41bp 1 0.350346609612305 1 0.120567709207535 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control STK17A ENSG00000164543 CDS Human protein_coding chr7:43664244 chr7:43664264 synonymous SNV . 0 41 hm5C_associated_SNPs_34619 0 0 1 0 0 Ribosome 1 0.500231823838545 1 0.999536352322909 hm5C_site_34401 DeepMRMD:1;iRNA_m5C:0.999536352322909 34402 chr10 64159453 64159453 1 + C T SKCM 64159451 + 64159431 64159471 41 CTCAAGAGACCTCTGCAGACCTCCAAAGAAAGGGGAGCTCC CTCAAGAGACCTCTGCAGACCTTCAAAGAAAGGGGAGCTCC < 41bp 1 0.512521988230778 1 0.435124844312668 experiment 0.974956023538445 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF365 ENSG00000138311 CDS Human protein_coding chr10:64159451 chr10:64159453 nonsynonymous SNV 0.058 0 23 hm5C_associated_SNPs_34620 0 0 0 0 0 exosome 1 0.500231643980945 1 0.99953671203811 hm5C_site_34402 DeepMRMD:1;iRNA_m5C:0.99953671203811 34403 chr4 155486961 155486961 1 + G A SKCM 155486953 + 155486933 155486973 41 ATTATATTTCTGCCTCATTCCTTGTAGGGTTTCTTCAGTGC ATTATATTTCTGCCTCATTCCTTGTAGGATTTCTTCAGTGC < 41bp 1 0.120168202684517 1 0.385300755500793 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGB ENSG00000171564 CDS Human protein_coding chr4:155486953 chr4:155486961 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_34621 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34403 DeepMRMD:1;iRNA_m5C:0.999536712157815 34404 chr20 30381768 30381768 1 + C T SKCM 30381750 + 30381730 30381770 41 CAAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGA CAAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTTGA < 41bp 1 0.0192132767759442 1 0.0679475963115692 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381750 chr20:30381768 stopgain 0.998 1 39 hm5C_associated_SNPs_34622 0 0 1 0 1 Cytosol 1 0.50023164392203 1 0.99953671215594 hm5C_site_34404 DeepMRMD:1;iRNA_m5C:0.99953671215594 34405 chr20 30381768 30381768 1 + C T SKCM 30381751 + 30381731 30381771 41 AAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTCGAG AAGAACTGTGGAAATATGCCCTTTCTCGTTTGATTCTTGAG < 41bp 1 0.0256420865315904 1 0.0603235065937042 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30381751 chr20:30381768 stopgain 0.998 1 38 hm5C_associated_SNPs_34623 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_34405 DeepMRMD:1;iRNA_m5C:0.999536712157815 34406 chr15 89172601 89172601 1 + C T SKCM 89172606 + 89172586 89172626 41 CCCGGCCTCCACACCCGGGCCCGGGTCTCTCTAAAGGACCT CCCGGCCTCCACACCTGGGCCCGGGTCTCTCTAAAGGACCT < 41bp 1 0.4130414019127 1 0.209031820297241 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AEN ENSG00000181026 CDS Human protein_coding chr15:89172606 chr15:89172601 nonsynonymous SNV 0.045 3 16 hm5C_associated_SNPs_34624 0 0 1 0 1 Ribosome 1 0.500231643923512 1 0.999536712152976 hm5C_site_34406 DeepMRMD:1;iRNA_m5C:0.999536712152976 34407 chr19 36124044 36124044 1 + C T SKCM 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCCTTCGTGGGCCCCCCTCTGCCTGGGCCCCCT < 41bp 1 0.237371938984562 1 0.0639811158180237 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124044 nonsynonymous SNV 0.938 3 12 hm5C_associated_SNPs_34625 0 0 1 0 3 Ribosome 1 0.500231643559013 1 0.999536712881974 hm5C_site_34407 DeepMRMD:1;iRNA_m5C:0.999536712881974 34408 chr19 36124043 36124043 1 + C T SKCM 36124053 + 36124033 36124073 41 CTCACCAGGCCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT CTCACCAGGCTCTCGTGGGCCCCCCTCTGCCTGGGCCCCCT < 41bp 1 0.27725357819583 1 0.0431922674179077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124053 chr19:36124043 synonymous SNV . 0 11 hm5C_associated_SNPs_34626 0 0 1 0 3 Ribosome 1 0.500231643921088 1 0.999536712157825 hm5C_site_34408 DeepMRMD:1;iRNA_m5C:0.999536712157825 34409 chr22 42271656 42271656 1 + A G SKCM 42271638 + 42271618 42271658 41 CAGAATGTCCTTCTGATGTCCCCCCCAGCCTCTGACTCAGG CAGAATGTCCTTCTGATGTCCCCCCCAGCCTCTGACTCGGG < 41bp 1 0.0397421358420783 1 0.0518558025360107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42271638 chr22:42271656 synonymous SNV . 0 39 hm5C_associated_SNPs_34627 0 0 1 0 1 Ribosome 1 0.500231643920093 1 0.999536712159814 hm5C_site_34409 DeepMRMD:1;iRNA_m5C:0.999536712159814 34410 chr11 61630757 61630757 1 + C T SKCM 61630766 + 61630746 61630786 41 TCTTGCAGGTTCCTGGAGAGCCACTGGTTTGTGTGGGTCAC TCTTGCAGGTTTCTGGAGAGCCACTGGTTTGTGTGGGTCAC < 41bp 1 0.191249476410564 1 0.202507019042969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61630766 chr11:61630757 synonymous SNV . 0 12 hm5C_associated_SNPs_34628 0 0 1 0 2 Ribosome 1 0.500231643921052 1 0.999536712157896 hm5C_site_34410 DeepMRMD:1;iRNA_m5C:0.999536712157896 34411 chr17 42225449 42225449 1 + C T SKCM 42225441 + 42225421 42225461 41 TCCAGCACGCCCAGTGCTGACAGCCGTCCATCATGCATAGG TCCAGCACGCCCAGTGCTGACAGCCGTCTATCATGCATAGG < 41bp 1 0.488988171173702 1 0.0645920634269714 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225441 chr17:42225449 nonsynonymous SNV 0.002 1 29 hm5C_associated_SNPs_34629 0 0 1 0 0 chromatin 1 0.500231605158118 1 0.999536789683764 hm5C_site_34411 DeepMRMD:1;iRNA_m5C:0.999536789683764 34412 chr17 42225449 42225449 1 + C T SKCM 42225444 + 42225424 42225464 41 AGCACGCCCAGTGCTGACAGCCGTCCATCATGCATAGGAGC AGCACGCCCAGTGCTGACAGCCGTCTATCATGCATAGGAGC < 41bp 1 0.0514303816576417 1 0.476225703954697 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225444 chr17:42225449 nonsynonymous SNV 0.002 1 26 hm5C_associated_SNPs_34630 0 0 1 0 0 chromatin 1 0.500232939510058 1 0.999534120979884 hm5C_site_34412 DeepMRMD:1;iRNA_m5C:0.999534120979884 34413 chrX 154005119 154005119 1 + G A SKCM 154005114 + 154005094 154005134 41 GAAGAAGAAGAAGAAGAAAGCAAAAGAGGTAGAATTGGTTT GAAGAAGAAGAAGAAGAAAGCAAAAAAGGTAGAATTGGTTT < 41bp 1 0.669814959746981 1 0.485008925199509 experiment 0.660370080506038 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 CDS Human protein_coding chrX:154005114 chrX:154005119 nonsynonymous SNV 0.476 1 26 hm5C_associated_SNPs_34631 0 0 1 0 1 Cytosol 1 0.500231643921108 1 0.999536712157785 hm5C_site_34413 DeepMRMD:1;iRNA_m5C:0.999536712157785 34414 chrX 154005119 154005119 1 + G A SKCM 154005135 + 154005115 154005155 41 AAAAGAGGTAGAATTGGTTTCTGAGTAGTGAAGGCCACTTG AAAAAAGGTAGAATTGGTTTCTGAGTAGTGAAGGCCACTTG < 41bp 1 0.630051701848233 1 0.304539144039154 experiment 0.739896596303534 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 CDS Human protein_coding chrX:154005135 chrX:154005119 nonsynonymous SNV 0.476 1 5 hm5C_associated_SNPs_34632 0 0 1 0 1 Cytosol 1 0.500233550005471 1 0.999532899989058 hm5C_site_34414 DeepMRMD:1;iRNA_m5C:0.999532899989058 34415 chr4 123260561 123260561 1 + C T SKCM 123260543 + 123260523 123260563 41 GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACCAG GAGTGGAACAAAGACTTCTGCTAGCAAAACTGGAATACTAG < 41bp 1 0.109169445537165 1 0.328504383563995 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123260543 chr4:123260561 nonsynonymous SNV 0.945 3 39 hm5C_associated_SNPs_34633 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34415 DeepMRMD:1;iRNA_m5C:0.999536712157815 34416 chrX 47102882 47102882 1 + C T SKCM 47102871 + 47102851 47102891 41 TTCCTGTCTACCTGCGGGAGCGCACCCCTGCCCGTGACTAC TTCCTGTCTACCTGCGGGAGCGCACCCCTGCTCGTGACTAC < 41bp 1 0.164117593306378 1 0.188775539398193 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47102871 chrX:47102882 synonymous SNV . 0 32 hm5C_associated_SNPs_34634 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34416 DeepMRMD:1;iRNA_m5C:0.999536712157815 34417 chr17 38249506 38249506 1 + C T SKCM 38249489 + 38249469 38249509 41 CGAAGAGCCCGCAGCAGCGTCTCCTGGAGCTGCTCCACCGA CGAAGAGCCCGCAGCAGCGTCTCCTGGAGCTGCTCCATCGA < 41bp 1 0.518148628877578 1 0.648516952991486 experiment 0.963702742244843 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NR1D1;THRA ENSG00000126351;ENSG00000126368 CDS Human other chr17:38249489 chr17:38249506 nonsynonymous SNV 1.000 5 38 hm5C_associated_SNPs_34635 0 0 0 0 0 unknown 1 0.500231693269843 0.702966094017028 0.999536613460313 hm5C_site_34417 DeepMRMD:0.702966094017028;iRNA_m5C:0.999536613460313 34418 chr8 86038926 86038926 1 + C T SKCM 86038944 + 86038924 86038964 41 TCCCTTGTTGAACAGCTAGACCAAGAGAGAGAGAAGAGATG TCTCTTGTTGAACAGCTAGACCAAGAGAGAGAGAAGAGATG < 41bp 1 0.227359223063418 1 0.192346274852753 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86038944 chr8:86038926 synonymous SNV . 0 3 hm5C_associated_SNPs_34636 0 0 0 0 1 exosome 1 0.500231643980659 1 0.999536712038682 hm5C_site_34418 DeepMRMD:1;iRNA_m5C:0.999536712038682 34419 chr14 64898334 64898334 1 + C T SKCM 64898346 + 64898326 64898366 41 GGATATTTCATGAACTGACCCAGACAGACAAGGTAGGATGC GGATATTTTATGAACTGACCCAGACAGACAAGGTAGGATGC < 41bp 1 0.251670795599647 1 0.153504639863968 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64898346 chr14:64898334 nonsynonymous SNV 0.972 4 9 hm5C_associated_SNPs_34637 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34419 DeepMRMD:1;iRNA_m5C:0.999536712157815 34420 chr14 64898334 64898334 1 + C T SKCM 64898350 + 64898330 64898370 41 ATTTCATGAACTGACCCAGACAGACAAGGTAGGATGCCAAA ATTTTATGAACTGACCCAGACAGACAAGGTAGGATGCCAAA < 41bp 1 0.277479900781873 1 0.133778691291809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64898350 chr14:64898334 nonsynonymous SNV 0.972 4 5 hm5C_associated_SNPs_34638 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34420 DeepMRMD:1;iRNA_m5C:0.999536712157815 34421 chr9 104307077 104307077 1 + G A SKCM 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTGATAGTGGAGGAAGCAGTGCAAGAGCTGAACTCTT < 41bp 1 0.300447377309355 1 0.780908465385437 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307077 synonymous SNV . 0 28 hm5C_associated_SNPs_34639 0 0 1 0 2 nucleus 1 0.500231643921095 0.438183069229126 0.999536712157811 hm5C_site_34421 DeepMRMD:0.438183069229126;iRNA_m5C:0.999536712157811 34422 chr9 139734199 139734199 1 + C T SKCM 139734201 + 139734181 139734221 41 GACTGACGAGGATGAGGGCCCTGCCGAGCCGCCCCCACCCC GACTGACGAGGATGAGGGTCCTGCCGAGCCGCCCCCACCCC < 41bp 1 0.465323538154544 1 0.22101104259491 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734201 chr9:139734199 synonymous SNV . 0 19 hm5C_associated_SNPs_34641 0 0 1 0 1 chromatin 1 0.500231642951853 1 0.999536714096295 hm5C_site_34422 DeepMRMD:1;iRNA_m5C:0.999536714096295 34423 chr1 27089606 27089606 1 + T G SKCM 27089608 + 27089588 27089628 41 ACCTTATGGCACACTCCCTCCAGGGAGGATGAGTCACGCCT ACCTTATGGCACACTCCCGCCAGGGAGGATGAGTCACGCCT < 41bp 1 0.607998230310716 1 0.881667137145996 experiment 0.784003539378568 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27089608 chr1:27089606 synonymous SNV . 0 19 hm5C_associated_SNPs_34642 0 0 1 0 0 Nucleus 1 0.500231644503622 0.236665725708008 0.999536710992756 hm5C_site_34423 DeepMRMD:0.236665725708008;iRNA_m5C:0.999536710992756 34424 chr17 4859344 4859344 1 + C T SKCM 4859339 + 4859319 4859359 41 GGGGGATGACTTGACAGTCACCAACCCCAAGAGGATTGCCC GGGGGATGACTTGACAGTCACCAACTCCAAGAGGATTGCCC < 41bp 1 0.108399562311797 1 0.0636754930019379 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859339 chr17:4859344 nonsynonymous SNV 0.999 2 26 hm5C_associated_SNPs_34643 0 0 1 0 1 nucleus 1 0.500232123306586 1 0.999535753386827 hm5C_site_34424 DeepMRMD:1;iRNA_m5C:0.999535753386827 34425 chr17 4859344 4859344 1 + C T SKCM 4859340 + 4859320 4859360 41 GGGGATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCA GGGGATGACTTGACAGTCACCAACTCCAAGAGGATTGCCCA < 41bp 1 0.363921298048315 1 0.355515003204346 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859340 chr17:4859344 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_34644 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_34425 DeepMRMD:1;iRNA_m5C:0.999536712157816 34426 chr17 4859344 4859344 1 + C T SKCM 4859345 + 4859325 4859365 41 TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCCG TGACTTGACAGTCACCAACTCCAAGAGGATTGCCCAGGCCG < 41bp 1 0.248342374356422 1 0.383737832307816 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859345 chr17:4859344 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_34645 0 0 1 0 1 nucleus 1 0.500231643920673 1 0.999536712158654 hm5C_site_34426 DeepMRMD:1;iRNA_m5C:0.999536712158654 34427 chr17 4859344 4859344 1 + C T SKCM 4859357 + 4859337 4859377 41 CACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGG CACCAACTCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGG < 41bp 1 0.278856837668549 1 0.127421826124191 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859357 chr17:4859344 nonsynonymous SNV 0.999 2 8 hm5C_associated_SNPs_34646 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34427 DeepMRMD:1;iRNA_m5C:0.999536712157815 34428 chr17 4859344 4859344 1 + C T SKCM 4859358 + 4859338 4859378 41 ACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGC ACCAACTCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGC < 41bp 1 0.290866161053863 1 0.424510419368744 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859358 chr17:4859344 nonsynonymous SNV 0.999 2 7 hm5C_associated_SNPs_34647 0 0 1 0 1 nucleus 1 0.500231644285549 1 0.999536711428902 hm5C_site_34428 DeepMRMD:1;iRNA_m5C:0.999536711428902 34429 chr17 4859344 4859344 1 + C T SKCM 4859359 + 4859339 4859379 41 CCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCC CCAACTCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCC < 41bp 1 0.428496790213847 1 0.547518908977509 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859359 chr17:4859344 nonsynonymous SNV 0.999 2 6 hm5C_associated_SNPs_34648 0 0 1 0 1 nucleus 1 0.500231643921092 0.904962182044982 0.999536712157815 hm5C_site_34429 DeepMRMD:0.904962182044982;iRNA_m5C:0.999536712157815 34430 chr17 4859344 4859344 1 + C T SKCM 4859363 + 4859343 4859383 41 CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA CTCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA < 41bp 1 0.148597725614515 1 0.0885458886623383 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859363 chr17:4859344 nonsynonymous SNV 0.999 2 2 hm5C_associated_SNPs_34649 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_34430 DeepMRMD:1;iRNA_m5C:0.999536712157816 34431 chr17 4859344 4859344 1 + C T SKCM 4859364 + 4859344 4859384 41 CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA TCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA < 41bp 1 0.259996923384463 1 0.311418056488037 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859364 chr17:4859344 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_34650 0 0 1 0 1 nucleus 1 0.500231643899695 1 0.99953671220061 hm5C_site_34431 DeepMRMD:1;iRNA_m5C:0.99953671220061 34432 chr16 72142735 72142735 1 + C T SKCM 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCCGCACAGGGATGTCCTGCCACTTGCACCCCACCA < 41bp 1 0.131493358664392 1 0.0772619843482971 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142735 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_34651 0 0 1 0 2 Cytosol 1 0.500231643862849 1 0.999536712274302 hm5C_site_34432 DeepMRMD:1;iRNA_m5C:0.999536712274302 34433 chr9 130434349 130434349 1 + C T SKCM 130434344 + 130434324 130434364 41 TTACAGACCACCATGCGGGACCTGTCCCAGATGCTGAAGAA TTACAGACCACCATGCGGGACCTGTTCCAGATGCTGAAGAA < 41bp 1 0.0436929411984373 1 0.0159619450569153 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130434344 chr9:130434349 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_34652 0 0 1 0 2 Cytosol 1 0.500184558885333 1 0.999630882229334 hm5C_site_34433 DeepMRMD:1;iRNA_m5C:0.999630882229334 34434 chr3 108353762 108353762 1 + C T SKCM 108353763 + 108353743 108353783 41 AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG AAAGTTGCTGTGTTTATTTTCATAAAATTTGCTGGAAAAAG < 41bp 1 0.197383234816606 1 0.378414869308472 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108353763 chr3:108353762 synonymous SNV . 0 20 hm5C_associated_SNPs_34653 0 0 0 0 1 Ribosome 1 0.500231708518841 1 0.999536582962319 hm5C_site_34434 DeepMRMD:1;iRNA_m5C:0.999536582962319 34435 chr21 44152052 44152052 1 + C T SKCM 44152044 + 44152024 44152064 41 AGGGCTGCTACCAGGAAGGCCAGCGCATCCCTCCAGGTAAC AGGGCTGCTACCAGGAAGGCCAGCGCATTCCTCCAGGTAAC < 41bp 1 0.681174620978421 1 0.345337092876434 experiment 0.637650758043158 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDE9A ENSG00000160191 CDS Human protein_coding chr21:44152044 chr21:44152052 synonymous SNV . 0 29 hm5C_associated_SNPs_34654 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34435 DeepMRMD:1;iRNA_m5C:0.999536712157815 34436 chr6 159181711 159181711 1 + G A SKCM 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAAAGCTCACAGTCCGGGCTAAGCTGGT < 41bp 1 0.578158000197095 1 0.259757936000824 experiment 0.843683999605809 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181711 nonsynonymous SNV 0.091 3 16 hm5C_associated_SNPs_34656 0 0 0 0 2 exosome 1 0.500231643921105 1 0.99953671215779 hm5C_site_34436 DeepMRMD:1;iRNA_m5C:0.99953671215779 34437 chr3 49060173 49060173 1 + C T SKCM 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAAGACAGCTTTTCTCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.447314951779066 1 0.353045672178268 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060173 synonymous SNV . 0 20 hm5C_associated_SNPs_34657 0 0 1 0 2 Ribosome 1 0.500231643830808 1 0.999536712338383 hm5C_site_34437 DeepMRMD:1;iRNA_m5C:0.999536712338383 34438 chr1 10479790 10479790 1 + C T SKCM 10479787 + 10479767 10479807 41 CCATGGTGGCACCGTGTCATCCTCGTCATACAATGCCTGAT CCATGGTGGCACCGTGTCATCCTTGTCATACAATGCCTGAT < 41bp 1 0.131496444203156 1 0.0722751915454865 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PGD ENSG00000142657 CDS Human protein_coding chr1:10479787 chr1:10479790 nonsynonymous SNV 0.822 3 24 hm5C_associated_SNPs_34658 0 0 1 0 0 Cytosol 1 0.500231883242253 1 0.999536233515494 hm5C_site_34438 DeepMRMD:1;iRNA_m5C:0.999536233515494 34439 chr15 43484963 43484963 1 + A T SKCM 43484957 + 43484937 43484977 41 TTAGTGTGGATGATTTGGCTCTGAGCATATATCCACCTATG TTAGTGTGGATGATTTGGCTCTGAGCTTATATCCACCTATG < 41bp 1 0.645552444859903 1 0.0891839265823364 experiment 0.708895110280194 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCNDBP1 ENSG00000166946 CDS Human protein_coding chr15:43484957 chr15:43484963 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_34659 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34439 DeepMRMD:1;iRNA_m5C:0.999536712157815 34440 chr6 159181713 159181713 1 + G A SKCM 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAGAACTCACAGTCCGGGCTAAGCTGGT < 41bp 1 0.698001683261316 1 0.305909276008606 experiment 0.603996633477368 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181713 synonymous SNV . 0 18 hm5C_associated_SNPs_34660 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34440 DeepMRMD:1;iRNA_m5C:0.999536712157815 34441 chr17 27014416 27014416 1 + C T SKCM 27014434 + 27014414 27014454 41 TGCCCACCCTTACAGCCAGGCCTTGATCCAGTATGTTTGTG TGTCCACCCTTACAGCCAGGCCTTGATCCAGTATGTTTGTG < 41bp 1 0.0246596654849962 1 0.0281786918640137 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27014434 chr17:27014416 nonsynonymous SNV 0.989 1 3 hm5C_associated_SNPs_34661 0 0 1 0 2 Cytosol 1 0.500231643941445 1 0.99953671211711 hm5C_site_34441 DeepMRMD:1;iRNA_m5C:0.99953671211711 34442 chr11 117152336 117152336 1 + C T SKCM 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATTCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT < 41bp 1 0.573493312527068 1 0.640980660915375 experiment 0.853013374945863 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152336 synonymous SNV . 0 6 hm5C_associated_SNPs_34662 0 0 1 0 2 chromatin 1 0.500231643920736 0.71803867816925 0.999536712158527 hm5C_site_34442 DeepMRMD:0.71803867816925;iRNA_m5C:0.999536712158527 34443 chr6 168314949 168314949 1 + G A SKCM 168314938 + 168314918 168314958 41 AGCAAGACCGAGACCTTAGTCGGATCACACTGGATGCTCAA AGCAAGACCGAGACCTTAGTCGGATCACACTAGATGCTCAA < 41bp 1 0.35466157734268 1 0.909610748291016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168314938 chr6:168314949 synonymous SNV . 0 32 hm5C_associated_SNPs_34663 0 0 1 0 1 unknown 1 0.500231643914345 0.180778503417968 0.99953671217131 hm5C_site_34443 DeepMRMD:0.180778503417968;iRNA_m5C:0.99953671217131 34444 chr19 48220223 48220223 1 + G A SKCM 48220221 + 48220201 48220241 41 GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCCGCAAA GCAACGCCCTCGTCGTGGACCCAGACAAGCCCTTCCGCAAA < 41bp 1 0.414835728983054 1 0.30385947227478 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EHD2 ENSG00000024422 CDS Human protein_coding chr19:48220221 chr19:48220223 synonymous SNV . 0 23 hm5C_associated_SNPs_34664 0 0 1 0 1 Nucleus 1 0.500231643921195 1 0.99953671215761 hm5C_site_34444 DeepMRMD:1;iRNA_m5C:0.99953671215761 34445 chr16 85682309 85682309 1 + C T SKCM 85682293 + 85682273 85682313 41 CCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTC CCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATTGCTC < 41bp 1 0.136715822426875 1 0.0740616023540497 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85682293 chr16:85682309 synonymous SNV . 0 37 hm5C_associated_SNPs_34665 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34445 DeepMRMD:1;iRNA_m5C:0.999536712157815 34446 chr6 33652691 33652691 1 + C T SKCM 33652675 + 33652655 33652695 41 AAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCACCTGCT AAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCACTTGCT < 41bp 1 0.180302907361557 1 0.226409912109375 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33652675 chr6:33652691 synonymous SNV . 0 37 hm5C_associated_SNPs_34666 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643923328 1 0.999536712153343 hm5C_site_34446 DeepMRMD:1;iRNA_m5C:0.999536712153343 34447 chr18 77171144 77171144 1 + C T SKCM 77171162 + 77171142 77171182 41 CTCCCCGCGGGTCAGCGTGACCGACGACTCGTGGTTGGGCA CTTCCCGCGGGTCAGCGTGACCGACGACTCGTGGTTGGGCA < 41bp 1 0.173346506685662 1 0.136889606714249 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77171162 chr18:77171144 nonsynonymous SNV 0.848 4 3 hm5C_associated_SNPs_34667 0 0 0 0 0 Cytosol 1 0.50023112863266 1 0.99953774273468 hm5C_site_34447 DeepMRMD:1;iRNA_m5C:0.99953774273468 34448 chr8 121267517 121267517 1 + G A SKCM 121267525 + 121267505 121267545 41 GCCAAACATGTTGAAATGACCAGCTTGTGTGCCCACTGGCA GCCAAACATGTTAAAATGACCAGCTTGTGTGCCCACTGGCA < 41bp 1 0.274876386628848 1 0.179264545440674 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121267525 chr8:121267517 nonsynonymous SNV 0.867 0 13 hm5C_associated_SNPs_34668 0 0 0 0 0 Ribosome 1 0.50022517662687 1 0.99954964674626 hm5C_site_34448 DeepMRMD:1;iRNA_m5C:0.99954964674626 34449 chr11 107917082 107917082 1 + A G SKCM 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTGAGCAAGCACAGGCAGTAAGTTCTACATGC < 41bp 1 0.484865433409705 1 0.469757556915283 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917082 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_34669 0 0 1 1 2 Ribosome 1 0.500231644007321 1 0.999536711985358 hm5C_site_34449 DeepMRMD:1;iRNA_m5C:0.999536711985358 34450 chr6 64394364 64394364 1 + T C SKCM 64394368 + 64394348 64394388 41 ATCCGGGAGAAATAGATGTGCCATCTCATGAATTAAATTGT ATCCGGGAGAAATAGACGTGCCATCTCATGAATTAAATTGT < 41bp 1 0.0126034806049833 1 0.0762951076030731 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PHF3 ENSG00000118482 CDS Human protein_coding chr6:64394368 chr6:64394364 synonymous SNV . 0 17 hm5C_associated_SNPs_34670 0 0 1 0 0 Cytosol 1 0.500231643920887 1 0.999536712158227 hm5C_site_34450 DeepMRMD:1;iRNA_m5C:0.999536712158227 34451 chr12 104327797 104327797 1 + T C SKCM 104327808 + 104327788 104327828 41 AGAGAAGAGTTGGTTAAAAACCTTGGTACCATAGCCAAATC AGAGAAGAGCTGGTTAAAAACCTTGGTACCATAGCCAAATC < 41bp 1 0.260850353367572 1 0.095516562461853 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104327808 chr12:104327797 synonymous SNV . 0 10 hm5C_associated_SNPs_34672 0 0 1 0 0 Nucleus 1 0.500231644446953 1 0.999536711106094 hm5C_site_34451 DeepMRMD:1;iRNA_m5C:0.999536711106094 34452 chr10 12162788 12162788 1 + C T SKCM 12162801 + 12162781 12162821 41 TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC TATAGCTTCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC < 41bp 1 0.179086016580855 1 0.755832672119141 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12162801 chr10:12162788 synonymous SNV . 0 8 hm5C_associated_SNPs_34673 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921088 0.488334655761718 0.999536712157824 hm5C_site_34452 DeepMRMD:0.488334655761718;iRNA_m5C:0.999536712157824 34453 chr22 35783086 35783086 1 + C T SKCM 35783079 + 35783059 35783099 41 ACCAAGTTCAAGCAGCTCTACCGCTCCCGCATGAACTCCCT ACCAAGTTCAAGCAGCTCTACCGCTCCTGCATGAACTCCCT < 41bp 1 0.155792510434981 1 0.0594518780708313 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35783079 chr22:35783086 nonsynonymous SNV 0.998 4 28 hm5C_associated_SNPs_34674 0 0 1 0 1 exosome 1 0.500231651607114 1 0.999536696785771 hm5C_site_34453 DeepMRMD:1;iRNA_m5C:0.999536696785771 34454 chr8 145065437 145065437 1 + C T SKCM 145065439 + 145065419 145065459 41 TCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGG TCTGGGGACAACTATCCTTCCCCCAACCCTGGATATCCGGG < 41bp 1 0.383776747428689 1 0.446441680192947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065439 chr8:145065437 nonsynonymous SNV 0.891 1 19 hm5C_associated_SNPs_34675 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921096 1 0.999536712157807 hm5C_site_34454 DeepMRMD:1;iRNA_m5C:0.999536712157807 34455 chr7 30661043 30661043 1 + C T SKCM 30661058 + 30661038 30661078 41 TCGTTCCTGTTATGACCTCTCCTGTCATGCACGAGCCACCA TCGTTTCTGTTATGACCTCTCCTGTCATGCACGAGCCACCA < 41bp 1 0.251944276727795 1 0.200531721115112 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GARS ENSG00000106105 CDS Human protein_coding chr7:30661058 chr7:30661043 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_34676 0 0 1 0 0 Cytosol 1 0.500231675691311 1 0.999536648617378 hm5C_site_34455 DeepMRMD:1;iRNA_m5C:0.999536648617378 34456 chr19 11422832 11422832 1 + C T SKCM 11422851 + 11422831 11422871 41 TCCTAAAAATCACCAAGACTCAGAGCTTCACCCTGAGTGGG TTCTAAAAATCACCAAGACTCAGAGCTTCACCCTGAGTGGG < 41bp 1 0.665657113027851 1 0.592857956886292 experiment 0.668685773944298 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TSPAN16 ENSG00000130167 CDS Human protein_coding chr19:11422851 chr19:11422832 synonymous SNV . 0 2 hm5C_associated_SNPs_34677 0 0 0 0 2 nucleus 1 0.50023164393261 0.814284086227416 0.999536712134781 hm5C_site_34456 DeepMRMD:0.814284086227416;iRNA_m5C:0.999536712134781 34457 chr9 135946631 135946631 1 + C T SKCM 135946625 + 135946605 135946645 41 CCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGG CCCCACGGGTGACTCCGAGACCGCCCTCGTGCCGCCCACGG < 41bp 1 0.352081734657365 1 0.211996525526047 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946625 chr9:135946631 nonsynonymous SNV 0.001 1 27 hm5C_associated_SNPs_34679 0 0 0 0 0 exosome 1 0.500231711217111 1 0.999536577565778 hm5C_site_34457 DeepMRMD:1;iRNA_m5C:0.999536577565778 34458 chr9 135946631 135946631 1 + C T SKCM 135946626 + 135946606 135946646 41 CCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGG CCCACGGGTGACTCCGAGACCGCCCTCGTGCCGCCCACGGG < 41bp 1 0.556207421349664 1 0.281699955463409 experiment 0.887585157300673 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946626 chr9:135946631 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_34680 0 0 0 0 0 exosome 1 0.500231935244189 1 0.999536129511622 hm5C_site_34458 DeepMRMD:1;iRNA_m5C:0.999536129511622 34459 chr12 95879672 95879672 1 + C T SKCM 95879655 + 95879635 95879675 41 GCTTTATTTGTATCTCACAGCAAAAGTTCAAACAGACCCTC GCTTTATTTGTATCTCACAGCAAAAGTTCAAACAGACTCTC < 41bp 1 0.555061693571141 1 0.335017472505569 experiment 0.889876612857717 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95879655 chr12:95879672 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_34681 0 0 1 0 2 Ribosome 1 0.500230871028273 1 0.999538257943455 hm5C_site_34459 DeepMRMD:1;iRNA_m5C:0.999538257943455 34460 chr2 47221612 47221612 1 + C T SKCM 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC CATGGGCAAGGAGGAGAGTTCTTTCGCTACTCAGGCCCTGC < 41bp 1 0.0737174638838629 1 0.023982971906662 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221612 synonymous SNV . 0 28 hm5C_associated_SNPs_34682 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34460 DeepMRMD:1;iRNA_m5C:0.999536712157815 34461 chr15 63128178 63128178 1 + C T SKCM 63128184 + 63128164 63128204 41 GGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCTTCCA GGAGAAGCTCATCTTATCTGCCAAGCAGGTCGCCGCTTCCA < 41bp 1 0.0608963567899836 1 0.288959741592407 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63128184 chr15:63128178 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_34683 0 0 0 0 2 Nucleus 1 0.50023162477113 1 0.99953675045774 hm5C_site_34461 DeepMRMD:1;iRNA_m5C:0.99953675045774 34462 chr9 33366686 33366686 1 + C T SKCM 33366677 + 33366657 33366697 41 CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTT CCTCCCATGAACAGAGACCACCGCCGGATTATCCATGACTT < 41bp 1 0.222711159883963 1 0.1274553835392 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366677 chr9:33366686 synonymous SNV . 0 30 hm5C_associated_SNPs_34684 0 0 1 0 2 Nucleus 1 0.500231643920841 1 0.999536712158317 hm5C_site_34462 DeepMRMD:1;iRNA_m5C:0.999536712158317 34463 chr3 32932809 32932809 1 + G A SKCM 32932816 + 32932796 32932836 41 CAACTACCCTTGGGATGTGGCGGTGAATTCTGAGGGCAAGA CAACTACCCTTGGAATGTGGCGGTGAATTCTGAGGGCAAGA < 41bp 1 0.226661062561087 1 0.446304202079773 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32932816 chr3:32932809 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_34685 0 0 1 0 0 cytosol 1 0.500231643921119 1 0.999536712157762 hm5C_site_34463 DeepMRMD:1;iRNA_m5C:0.999536712157762 34464 chr1 29069408 29069408 1 + C T SKCM 29069427 + 29069407 29069447 41 TCTGCTGTTGGTAGCGGGTCCATTACTAGTAACATCGTGGC TTTGCTGTTGGTAGCGGGTCCATTACTAGTAACATCGTGGC < 41bp 1 0.273683330539163 1 0.197722017765045 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069427 chr1:29069408 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_34686 0 0 0 0 0 Cytosol 1 0.500231530920536 1 0.999536938158929 hm5C_site_34464 DeepMRMD:1;iRNA_m5C:0.999536938158929 34465 chr19 36227621 36227621 1 + C T SKCM 36227620 + 36227600 36227640 41 CGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG CGAGCTCTGAGGAAGAGCCTCTATCCCCAGATGATAAAGAG < 41bp 1 0.0217149691141747 1 0.11944454908371 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227620 chr19:36227621 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_34687 0 0 1 0 1 chromatin 1 0.500231643922329 1 0.999536712155342 hm5C_site_34465 DeepMRMD:1;iRNA_m5C:0.999536712155342 34466 chr7 55259447 55259447 1 + C T SKCM 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCATCGCGA < 41bp 1 0.0616313475198578 1 0.245875597000122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259447 synonymous SNV . 0 36 hm5C_associated_SNPs_34688 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_34466 DeepMRMD:1;iRNA_m5C:0.999536712157815 34467 chrX 70344182 70344182 1 + C T SKCM 70344193 + 70344173 70344213 41 TTTGATGATCCTGCCGATGACCCAGAGCACAAGGAGGCTGA TTTGATGATTCTGCCGATGACCCAGAGCACAAGGAGGCTGA < 41bp 1 0.354892331342569 1 0.181271106004715 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70344193 chrX:70344182 nonsynonymous SNV 0.984 1 10 hm5C_associated_SNPs_34689 0 0 1 0 1 Cytosol 1 0.500231644113938 1 0.999536711772124 hm5C_site_34467 DeepMRMD:1;iRNA_m5C:0.999536711772124 34468 chr1 116932243 116932243 1 + C T SKCM 116932239 + 116932219 116932259 41 TCTTTCTTCATCCTTTCTCTCATCCTTGAGTACACCTGGCT TCTTTCTTCATCCTTTCTCTCATCTTTGAGTACACCTGGCT < 41bp 1 0.179481971875092 1 0.167437642812729 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116932239 chr1:116932243 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_34690 0 0 1 0 1 Nucleus 1 0.500231643921301 1 0.999536712157398 hm5C_site_34468 DeepMRMD:1;iRNA_m5C:0.999536712157398 34469 chr9 134067664 134067664 1 + C T SKCM 134067670 + 134067650 134067690 41 CAGCAAGCCTTTCTCATTTTCTCCATCAGGGTCAGTAATGA CAGCAAGCCTTTCTTATTTTCTCCATCAGGGTCAGTAATGA < 41bp 1 0.503273395813748 1 0.972947716712952 experiment 0.993453208372504 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134067670 chr9:134067664 nonsynonymous SNV 0.998 3 15 hm5C_associated_SNPs_34692 0 0 1 0 1 Cytosol 1 0.500231643797808 0.054104566574096 0.999536712404383 hm5C_site_34469 DeepMRMD:0.054104566574096;iRNA_m5C:0.999536712404383 34470 chr16 24582700 24582700 1 + G A SKCM 24582720 + 24582700 24582740 41 GAAATTTTAAAAGTCTGTCTCAATCTTCCAAAGAGGCTAGA AAAATTTTAAAAGTCTGTCTCAATCTTCCAAAGAGGCTAGA < 41bp 1 0.0784702358771034 1 0.40418341755867 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout RBBP6 ENSG00000122257 CDS Human protein_coding chr16:24582720 chr16:24582700 nonsynonymous SNV 0.997 2 1 hm5C_associated_SNPs_34693 0 0 1 0 0 Cytosol 1 0.500231211442259 1 0.999537577115483 hm5C_site_34470 DeepMRMD:1;iRNA_m5C:0.999537577115483 34471 chr14 71428979 71428979 1 + C T SKCM 71428988 + 71428968 71429008 41 TCTGAGTTCATCCGAGAGGCCACACCCCCAGTTGGTTGCAG TCTGAGTTCATTCGAGAGGCCACACCCCCAGTTGGTTGCAG < 41bp 1 0.118208117463004 1 0.0642398595809937 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71428988 chr14:71428979 synonymous SNV . 0 12 hm5C_associated_SNPs_34694 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643919825 1 0.99953671216035 hm5C_site_34471 DeepMRMD:1;iRNA_m5C:0.99953671216035 34472 chr1 118499763 118499763 1 + C T SKCM 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AACGAATTTATTCAGCTGGGCTCTGATGTTGAACTTATATG < 41bp 1 0.162184479697132 1 0.077113151550293 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499763 synonymous SNV . 0 9 hm5C_associated_SNPs_34696 0 0 1 0 2 Nucleus 1 0.500231643921046 1 0.999536712157908 hm5C_site_34472 DeepMRMD:1;iRNA_m5C:0.999536712157908 34473 chr15 93482839 93482839 1 + C T SKCM 93482840 + 93482820 93482860 41 ACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGA ACCTCGTGTTAAAAAGCAGTCGAAGACTCAGCGTGGAAAGA < 41bp 1 0.190750869362509 1 0.414956122636795 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482840 chr15:93482839 nonsynonymous SNV 0.986 0 20 hm5C_associated_SNPs_34697 0 0 1 0 1 Nucleus 1 0.500233846989412 1 0.999532306021175 hm5C_site_34473 DeepMRMD:1;iRNA_m5C:0.999532306021175 34474 chr15 93482839 93482839 1 + C T SKCM 93482846 + 93482826 93482866 41 TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAA TGTTAAAAAGCAGTCGAAGACTCAGCGTGGAAAGAGAAAAA < 41bp 1 0.323127965694104 1 0.511764824390411 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482846 chr15:93482839 nonsynonymous SNV 0.986 0 14 hm5C_associated_SNPs_34698 0 0 1 0 1 Nucleus 1 0.500231643919462 0.976470351219178 0.999536712161077 hm5C_site_34474 DeepMRMD:0.976470351219178;iRNA_m5C:0.999536712161077 34475 chr15 93482839 93482839 1 + C T SKCM 93482848 + 93482828 93482868 41 TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAAAG TTAAAAAGCAGTCGAAGACTCAGCGTGGAAAGAGAAAAAAG < 41bp 1 0.478522838030166 1 0.736753821372986 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482848 chr15:93482839 nonsynonymous SNV 0.986 0 12 hm5C_associated_SNPs_34699 0 0 1 0 1 Nucleus 1 0.500234242581126 0.526492357254028 0.999531514837748 hm5C_site_34475 DeepMRMD:0.526492357254028;iRNA_m5C:0.999531514837748 34476 chr7 116199076 116199076 1 + C T SKCM 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGACGGCATTTGGAAGGCCAGCTTCACCATCTTCACTGT < 41bp 1 0.418623780259599 1 0.260498285293579 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199076 nonsynonymous SNV 0.996 2 32 hm5C_associated_SNPs_34700 0 0 0 3 1 Ribosome 1 0.500136600708224 1 0.999726798583552 hm5C_site_34476 DeepMRMD:1;iRNA_m5C:0.999726798583552 34477 chr12 989990 989990 1 + C T SKCM 989989 + 989969 990009 41 ATTCTACAGTCCTATCCCCTCCCATGCCGACAGAAGTACTG ATTCTACAGTCCTATCCCCTCTCATGCCGACAGAAGTACTG < 41bp 1 0.293362614097842 1 0.202258735895157 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WNK1 ENSG00000060237 CDS Human protein_coding chr12:989989 chr12:989990 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_34701 0 0 1 0 0 Ribosome 1 0.500231643935206 1 0.999536712129589 hm5C_site_34477 DeepMRMD:1;iRNA_m5C:0.999536712129589 34478 chr7 73944176 73944176 1 + C T SKCM 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCTTGCACTT < 41bp 1 0.022442932495948 1 0.119347810745239 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944176 synonymous SNV . 0 34 hm5C_associated_SNPs_34702 0 0 1 0 1 Nucleus 1 0.500231643916869 1 0.999536712166261 hm5C_site_34478 DeepMRMD:1;iRNA_m5C:0.999536712166261 34479 chr22 23523650 23523650 1 + C T SKCM 23523630 + 23523610 23523650 41 AGGTCCAACTTCGAGCGGATCCGCAAGGGCCATGGCCAGCC AGGTCCAACTTCGAGCGGATCCGCAAGGGCCATGGCCAGCT < 41bp 1 0.511321401146919 1 0.031111091375351 experiment 0.977357197706163 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23523630 chr22:23523650 nonsynonymous SNV 0.156 0 41 hm5C_associated_SNPs_34703 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34479 DeepMRMD:1;iRNA_m5C:0.999536712157815 34480 chr7 73944175 73944175 1 + C T SKCM 73944163 + 73944143 73944183 41 GGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTT GGGCATCCCGGACAAGATCCCCTTCAAGCGCCTCTGCACTT < 41bp 1 0.023705890297377 1 0.0824869573116302 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944163 chr7:73944175 nonsynonymous SNV 0.985 4 33 hm5C_associated_SNPs_34704 0 0 1 0 1 Nucleus 1 0.500231643921088 1 0.999536712157824 hm5C_site_34480 DeepMRMD:1;iRNA_m5C:0.999536712157824 34481 chr10 102748840 102748840 1 + C T SKCM 102748820 + 102748800 102748840 41 TGCCTACCCTTACTCTACCCCGAGGAACGACCTGCTTACCC TGCCTACCCTTACTCTACCCCGAGGAACGACCTGCTTACCT < 41bp 1 0.643890929645714 1 0.846455097198486 experiment 0.712218140708572 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TWNK ENSG00000107815 CDS Human protein_coding chr10:102748820 chr10:102748840 synonymous SNV . 0 41 hm5C_associated_SNPs_34705 0 0 1 0 0 unknown 1 0.500231643921092 0.307089805603028 0.999536712157815 hm5C_site_34481 DeepMRMD:0.307089805603028;iRNA_m5C:0.999536712157815 34482 chr15 93482840 93482840 1 + C T SKCM 93482839 + 93482819 93482859 41 AACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAG AACCTCGTGTTAAAAAGCAGCTGAAGACTCAGCGTGGAAAG < 41bp 1 0.42325246322339 1 0.0860512852668762 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482839 chr15:93482840 nonsynonymous SNV 0.987 0 22 hm5C_associated_SNPs_34707 0 0 1 0 1 Nucleus 1 0.500231643467951 1 0.999536713064099 hm5C_site_34482 DeepMRMD:1;iRNA_m5C:0.999536713064099 34483 chr15 93482840 93482840 1 + C T SKCM 93482846 + 93482826 93482866 41 TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAA TGTTAAAAAGCAGCTGAAGACTCAGCGTGGAAAGAGAAAAA < 41bp 1 0.319777250098293 1 0.615351855754852 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482846 chr15:93482840 nonsynonymous SNV 0.987 0 15 hm5C_associated_SNPs_34708 0 0 1 0 1 Nucleus 1 0.500231644287191 0.769296288490296 0.999536711425618 hm5C_site_34483 DeepMRMD:0.769296288490296;iRNA_m5C:0.999536711425618 34484 chr15 93482840 93482840 1 + C T SKCM 93482848 + 93482828 93482868 41 TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAAAG TTAAAAAGCAGCTGAAGACTCAGCGTGGAAAGAGAAAAAAG < 41bp 1 0.532461166890651 1 0.758452653884888 experiment 0.935077666218697 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482848 chr15:93482840 nonsynonymous SNV 0.987 0 13 hm5C_associated_SNPs_34709 0 0 1 0 1 Nucleus 1 0.500231667431179 0.483094692230224 0.999536665137642 hm5C_site_34484 DeepMRMD:0.483094692230224;iRNA_m5C:0.999536665137642 34485 chr7 56136241 56136241 1 + C T SKCM 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CTAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC < 41bp 1 0.59414024562175 1 0.685908079147339 experiment 0.8117195087565 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136241 nonsynonymous SNV 0.999 2 2 hm5C_associated_SNPs_34710 0 0 1 0 2 Ribosome 1 0.500233093013196 0.628183841705322 0.999533813973608 hm5C_site_34485 DeepMRMD:0.628183841705322;iRNA_m5C:0.999533813973608 34486 chr11 121495971 121495971 1 + G A SKCM 121495977 + 121495957 121495997 41 CCATCCTGCTGTACGATGAGCTGGGGTCTGGTGAGTTGCGA CCATCCTGCTGTACAATGAGCTGGGGTCTGGTGAGTTGCGA < 41bp 1 0.472276264801215 1 0.4044229388237 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SORL1 ENSG00000137642 CDS Human protein_coding chr11:121495977 chr11:121495971 nonsynonymous SNV 0.784 2 15 hm5C_associated_SNPs_34711 0 0 1 0 1 Nucleus 1 0.500231644231256 1 0.999536711537488 hm5C_site_34486 DeepMRMD:1;iRNA_m5C:0.999536711537488 34487 chr2 71901333 71901333 1 + T C SKCM 71901331 + 71901311 71901351 41 TCCTCTTCCGGGTCAGGATGCCTTCTGGAGGCTGGACAAGA TCCTCTTCCGGGTCAGGATGCCCTCTGGAGGCTGGACAAGA < 41bp 1 0.0533134075485276 1 0.0318058729171753 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71901331 chr2:71901333 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_34713 0 0 0 0 2 Nucleus 1 0.500231643921124 1 0.999536712157752 hm5C_site_34487 DeepMRMD:1;iRNA_m5C:0.999536712157752 34488 chr1 55072900 55072900 1 + C T SKCM 55072914 + 55072894 55072934 41 GGACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA GGACTTTGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACA < 41bp 1 0.685144294404035 1 0.910919904708862 experiment 0.629711411191931 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55072914 chr1:55072900 synonymous SNV . 0 7 hm5C_associated_SNPs_34714 0 0 0 0 2 chromatin 1 0.500231643928985 0.178160190582276 0.99953671214203 hm5C_site_34488 DeepMRMD:0.178160190582276;iRNA_m5C:0.99953671214203 34489 chr2 27302058 27302058 1 + G A SKCM 27302048 + 27302028 27302068 41 ACACAGGTTCCAGTGGGGCCCTCAGCCCCGGGGGGCCCCAG ACACAGGTTCCAGTGGGGCCCTCAGCCCCGAGGGGCCCCAG < 41bp 1 0.568368717213443 1 0.300880551338196 experiment 0.863262565573114 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302048 chr2:27302058 nonsynonymous SNV 0.112 1 31 hm5C_associated_SNPs_34715 0 0 1 0 1 Cytosol 1 0.500231643921044 1 0.999536712157912 hm5C_site_34489 DeepMRMD:1;iRNA_m5C:0.999536712157912 34490 chr2 27302058 27302058 1 + G A SKCM 27302063 + 27302043 27302083 41 GGGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCC GGGCCCTCAGCCCCGAGGGGCCCCAGGCCCAGATTGCCCCC < 41bp 1 0.346508405660666 1 0.114199042320251 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302063 chr2:27302058 nonsynonymous SNV 0.112 1 16 hm5C_associated_SNPs_34716 0 0 1 0 1 Cytosol 1 0.500231643921091 1 0.999536712157817 hm5C_site_34490 DeepMRMD:1;iRNA_m5C:0.999536712157817 34491 chr2 27302058 27302058 1 + G A SKCM 27302064 + 27302044 27302084 41 GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC GGCCCTCAGCCCCGAGGGGCCCCAGGCCCAGATTGCCCCCC < 41bp 1 0.316628127615121 1 0.368856489658356 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302064 chr2:27302058 nonsynonymous SNV 0.112 1 15 hm5C_associated_SNPs_34717 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34491 DeepMRMD:1;iRNA_m5C:0.999536712157815 34492 chr2 27302058 27302058 1 + G A SKCM 27302065 + 27302045 27302085 41 GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG GCCCTCAGCCCCGAGGGGCCCCAGGCCCAGATTGCCCCCCG < 41bp 1 0.572841494144388 1 0.481573522090912 experiment 0.854317011711224 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302065 chr2:27302058 nonsynonymous SNV 0.112 1 14 hm5C_associated_SNPs_34718 0 0 1 0 1 Cytosol 1 0.500231643920957 1 0.999536712158086 hm5C_site_34492 DeepMRMD:1;iRNA_m5C:0.999536712158086 34493 chr2 27302058 27302058 1 + G A SKCM 27302066 + 27302046 27302086 41 CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG CCCTCAGCCCCGAGGGGCCCCAGGCCCAGATTGCCCCCCGG < 41bp 1 0.55049569225835 1 0.737744212150574 experiment 0.899008615483299 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302066 chr2:27302058 nonsynonymous SNV 0.112 1 13 hm5C_associated_SNPs_34719 0 0 1 0 1 Cytosol 1 0.500231643921092 0.524511575698852 0.999536712157815 hm5C_site_34493 DeepMRMD:0.524511575698852;iRNA_m5C:0.999536712157815 34494 chr12 94562988 94562988 1 + C T SKCM 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCTGACCTGACATCCGTTTATGGCACCGTGGTAAT < 41bp 1 0.0644996685901793 1 0.0567764937877655 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94562988 synonymous SNV . 0 9 hm5C_associated_SNPs_34720 0 0 1 0 2 chromatin 1 0.500231643965556 1 0.999536712068888 hm5C_site_34494 DeepMRMD:1;iRNA_m5C:0.999536712068888 34495 chrX 57515256 57515256 1 + C T SKCM 57515266 + 57515246 57515286 41 AAAGGACTCCCTTTAGGCATCCAGGTTGTGGCTGGACCCTT AAAGGACTCCTTTTAGGCATCCAGGTTGTGGCTGGACCCTT < 41bp 1 0.556351007195995 1 0.861456513404846 experiment 0.887297985608011 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57515266 chrX:57515256 nonsynonymous SNV 0.914 4 11 hm5C_associated_SNPs_34721 0 0 0 0 1 nucleus 1 0.500231643921092 0.277086973190308 0.999536712157815 hm5C_site_34495 DeepMRMD:0.277086973190308;iRNA_m5C:0.999536712157815 34496 chr2 242396268 242396268 1 + C T SKCM 242396274 + 242396254 242396294 41 GAACAGGGCTCATCCCCACTCCTGAGCCCTGTCCTCAGTGA GAACAGGGCTCATCTCCACTCCTGAGCCCTGTCCTCAGTGA < 41bp 1 0.594903355195504 1 0.370950400829315 experiment 0.810193289608992 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242396274 chr2:242396268 synonymous SNV . 0 15 hm5C_associated_SNPs_34722 0 0 0 0 1 Nucleus 1 0.500231643169293 1 0.999536713661414 hm5C_site_34496 DeepMRMD:1;iRNA_m5C:0.999536713661414 34497 chr5 170883792 170883792 1 + C T SKCM 170883778 + 170883758 170883798 41 CACGACGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACAC CACGACGGTGACCAAGAGGTCCCGTCGGATCCGGTCCACAC < 41bp 1 0.362385620614267 1 0.222314804792404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGF18 ENSG00000156427 CDS Human protein_coding chr5:170883778 chr5:170883792 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_34723 0 0 0 0 0 nucleolus 1 0.50027805866364 1 0.999443882672719 hm5C_site_34497 DeepMRMD:1;iRNA_m5C:0.999443882672719 34498 chr5 170883792 170883792 1 + C T SKCM 170883780 + 170883760 170883800 41 CGACGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACACAC CGACGGTGACCAAGAGGTCCCGTCGGATCCGGTCCACACAC < 41bp 1 0.558801661703171 1 0.346204191446304 experiment 0.882396676593658 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGF18 ENSG00000156427 CDS Human protein_coding chr5:170883780 chr5:170883792 nonsynonymous SNV 0.998 1 33 hm5C_associated_SNPs_34724 0 0 0 0 0 nucleolus 1 0.500232879938115 1 0.999534240123769 hm5C_site_34498 DeepMRMD:1;iRNA_m5C:0.999534240123769 34499 chr17 78082400 78082400 1 + C T SKCM 78082404 + 78082384 78082424 41 TGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC TGACCAGGGCCCACTTTCCCCTGGTGAGTTGGGGTGGTGGC < 41bp 1 0.669638640034523 1 0.238395184278488 experiment 0.660722719930954 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082404 chr17:78082400 synonymous SNV . 0 17 hm5C_associated_SNPs_34726 0 0 0 0 1 Endoplasmic reticulum 1 0.500229972808724 1 0.999540054382552 hm5C_site_34499 DeepMRMD:1;iRNA_m5C:0.999540054382552 34500 chr17 4720032 4720032 1 + C T SKCM 4720020 + 4720000 4720040 41 TTATCACCAAGGACTGGGTGCAGCTGGACCGGCCTTTCGAA TTATCACCAAGGACTGGGTGCAGCTGGACCGGTCTTTCGAA < 41bp 1 0.326681295067275 1 0.162841022014618 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD2 ENSG00000129219 CDS Human protein_coding chr17:4720020 chr17:4720032 nonsynonymous SNV 0.996 3 33 hm5C_associated_SNPs_34729 0 0 1 0 1 Cytosol 1 0.500231644015514 1 0.999536711968971 hm5C_site_34500 DeepMRMD:1;iRNA_m5C:0.999536711968971 34501 chr7 142458485 142458485 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTC < 41bp 1 0.162101729389184 1 0.199498236179352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458485 synonymous SNV . 0 40 hm5C_associated_SNPs_34731 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34501 DeepMRMD:1;iRNA_m5C:0.999536712157815 34502 chr7 142458485 142458485 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAA < 41bp 1 0.107639202096879 1 0.157806277275085 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458485 synonymous SNV . 0 36 hm5C_associated_SNPs_34732 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34502 DeepMRMD:1;iRNA_m5C:0.999536712157815 34503 chr7 142458485 142458485 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAAT < 41bp 1 0.110243533295584 1 0.0821109414100647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458485 synonymous SNV . 0 35 hm5C_associated_SNPs_34733 0 0 0 0 3 Cytosol 1 0.500231645145383 1 0.999536709709234 hm5C_site_34503 DeepMRMD:1;iRNA_m5C:0.999536709709234 34504 chr7 142458485 142458485 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATT < 41bp 1 0.0148355272736477 1 0.0421867072582245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458485 synonymous SNV . 0 34 hm5C_associated_SNPs_34734 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34504 DeepMRMD:1;iRNA_m5C:0.999536712157815 34505 chr7 142458485 142458485 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATTC < 41bp 1 0.147560662344687 1 0.0436622798442841 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458485 synonymous SNV . 0 33 hm5C_associated_SNPs_34735 0 0 0 0 3 Cytosol 1 0.500231644096043 1 0.999536711807913 hm5C_site_34505 DeepMRMD:1;iRNA_m5C:0.999536711807913 34506 chr7 142458485 142458485 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATTCTGG < 41bp 1 0.18160473096652 1 0.130084156990051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458485 synonymous SNV . 0 30 hm5C_associated_SNPs_34736 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34506 DeepMRMD:1;iRNA_m5C:0.999536712157815 34507 chr7 142458485 142458485 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCCCCTACCAGGTGTCTCTGAATTCTGGC < 41bp 1 0.615511147640944 1 0.757321894168854 experiment 0.768977704718111 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458485 synonymous SNV . 0 29 hm5C_associated_SNPs_34737 0 0 0 0 3 Cytosol 1 0.500231648319556 0.485356211662292 0.999536703360888 hm5C_site_34507 DeepMRMD:0.485356211662292;iRNA_m5C:0.999536703360888 34508 chr7 142458485 142458485 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCCCCTACCAGGTGTCTCTGAATTCTGGCTACCACT < 41bp 1 0.254521240108281 1 0.194337010383606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458485 synonymous SNV . 0 22 hm5C_associated_SNPs_34738 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34508 DeepMRMD:1;iRNA_m5C:0.999536712157815 34509 chr7 142458485 142458485 1 + C T SKCM 142458497 + 142458477 142458517 41 CAGGTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTC CAGGTGTCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTC < 41bp 1 0.0711596443239412 1 0.0391932427883148 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458497 chr7:142458485 synonymous SNV . 0 9 hm5C_associated_SNPs_34741 0 0 0 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34509 DeepMRMD:1;iRNA_m5C:0.999536712157815 34510 chr7 142458485 142458485 1 + C T SKCM 142458500 + 142458480 142458520 41 GTGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT GTGTCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCT < 41bp 1 0.0704446902094073 1 0.0642716884613037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458500 chr7:142458485 synonymous SNV . 0 6 hm5C_associated_SNPs_34742 0 0 0 0 3 Cytosol 1 0.500231645242977 1 0.999536709514046 hm5C_site_34510 DeepMRMD:1;iRNA_m5C:0.999536709514046 34511 chr7 142458485 142458485 1 + C T SKCM 142458501 + 142458481 142458521 41 TGTCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC TGTCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTC < 41bp 1 0.194889893374393 1 0.402598828077316 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458501 chr7:142458485 synonymous SNV . 0 5 hm5C_associated_SNPs_34743 0 0 0 0 3 Cytosol 1 0.500231638226293 1 0.999536723547415 hm5C_site_34511 DeepMRMD:1;iRNA_m5C:0.999536723547415 34512 chr7 142458485 142458485 1 + C T SKCM 142458503 + 142458483 142458523 41 TCCCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT TCTCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCAT < 41bp 1 0.368801159172254 1 0.495380401611328 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458503 chr7:142458485 synonymous SNV . 0 3 hm5C_associated_SNPs_34744 0 0 0 0 3 Cytosol 1 0.500231643919299 1 0.999536712161402 hm5C_site_34512 DeepMRMD:1;iRNA_m5C:0.999536712161402 34513 chr7 142459649 142459649 1 + G A SKCM 142459631 + 142459611 142459651 41 GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCA GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAACA < 41bp 1 0.553589541239568 1 0.772555351257324 experiment 0.892820917520864 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459631 chr7:142459649 synonymous SNV . 0 39 hm5C_associated_SNPs_34745 0 0 0 0 1 Cytosol 1 0.500231643428434 0.454889297485352 0.999536713143131 hm5C_site_34513 DeepMRMD:0.454889297485352;iRNA_m5C:0.999536713143131 34514 chr7 142459649 142459649 1 + G A SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAACACAACATCGAAGTCCTGGAGGGGAA < 41bp 1 0.693398274644218 1 0.185111582279205 experiment 0.613203450711564 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459649 synonymous SNV . 0 15 hm5C_associated_SNPs_34746 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_34514 DeepMRMD:1;iRNA_m5C:0.999536712157815 34515 chr7 142459649 142459649 1 + G A SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GGAGAACACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.52866973428278 1 0.415048897266388 experiment 0.94266053143444 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459649 synonymous SNV . 0 6 hm5C_associated_SNPs_34748 0 0 0 0 1 Cytosol 1 0.500231642897088 1 0.999536714205824 hm5C_site_34515 DeepMRMD:1;iRNA_m5C:0.999536714205824 34516 chr22 22040815 22040815 1 + C T SKCM 22040825 + 22040805 22040845 41 TTCACCTCCACCGCGATGGTCCCGGAGACCACACATGAAGC TTCACCTCCATCGCGATGGTCCCGGAGACCACACATGAAGC < 41bp 1 0.312941159881881 1 0.389163821935654 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040825 chr22:22040815 nonsynonymous SNV 0.220 4 11 hm5C_associated_SNPs_34749 0 0 1 0 2 Cytosol 1 0.500231649044249 1 0.999536701911501 hm5C_site_34516 DeepMRMD:1;iRNA_m5C:0.999536701911501 34517 chrX 73046784 73046784 1 + C T SKCM 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCAAAGGCCTGAGTTGGATGGAAGTCTC < 41bp 1 0.328257502132451 1 0.507725298404694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046784 . . 0 16 hm5C_associated_SNPs_34750 0 0 1 3 0 unknown 1 0.500231644413413 0.984549403190612 0.999536711173174 hm5C_site_34517 DeepMRMD:0.984549403190612;iRNA_m5C:0.999536711173174 34518 chrX 73046784 73046784 1 + C T SKCM 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCAAAGGCCTGAGTTGGATGG < 41bp 1 0.229765423236617 1 0.183760225772858 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046784 . . 0 23 hm5C_associated_SNPs_34751 0 0 1 3 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_34518 DeepMRMD:1;iRNA_m5C:0.999536712157815 34519 chrX 73046784 73046784 1 + C T SKCM 73046797 - 73046777 73046817 41 GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCGAAGGCCT GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCAAAGGCCT < 41bp 1 0.261639375978802 1 0.168487876653671 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046797 chrX:73046784 . . 0 34 hm5C_associated_SNPs_34752 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_34519 DeepMRMD:1;iRNA_m5C:0.999536712157816 34520 chr10 105048212 105048212 1 + C T SKCM 105048230 + 105048210 105048250 41 ACCTAGAATCCTCAGTGCTACAACCTCCAAAGTCTCATCCA ACTTAGAATCCTCAGTGCTACAACCTCCAAAGTCTCATCCA < 41bp 1 0.342140400982384 1 0.151751279830933 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INA ENSG00000148798 CDS Human protein_coding chr10:105048230 chr10:105048212 nonsynonymous SNV 0.782 2 3 hm5C_associated_SNPs_34753 0 0 0 0 1 exosome 1 0.50023164333064 1 0.99953671333872 hm5C_site_34520 DeepMRMD:1;iRNA_m5C:0.99953671333872 34521 chr16 72142723 72142723 1 + C T SKCM 72142736 + 72142716 72142756 41 GAACATCCGCACAGGGATGCCCTGCCACTTGCACCCCACCA GAACATCTGCACAGGGATGCCCTGCCACTTGCACCCCACCA < 41bp 1 0.116974895516092 1 0.174912869930267 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142736 chr16:72142723 nonsynonymous SNV 0.962 4 8 hm5C_associated_SNPs_34754 0 0 0 0 1 Cytosol 1 0.500231707791175 1 0.99953658441765 hm5C_site_34521 DeepMRMD:1;iRNA_m5C:0.99953658441765 34522 chr17 60768369 60768369 1 + G A SKCM 60768363 + 60768343 60768383 41 TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGC TGAACTACTCCAACTGGGGGCCCCCGAGCTTGGGCCCCAGC < 41bp 1 0.0300099783776934 1 0.0892072021961212 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768363 chr17:60768369 nonsynonymous SNV 0.710 2 27 hm5C_associated_SNPs_34755 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34522 DeepMRMD:1;iRNA_m5C:0.999536712157815 34523 chr17 60768369 60768369 1 + G A SKCM 60768364 + 60768344 60768384 41 GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCA GAACTACTCCAACTGGGGGCCCCCGAGCTTGGGCCCCAGCA < 41bp 1 0.0907806278258592 1 0.447910696268082 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768364 chr17:60768369 nonsynonymous SNV 0.710 2 26 hm5C_associated_SNPs_34756 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34523 DeepMRMD:1;iRNA_m5C:0.999536712157815 34524 chr17 60768369 60768369 1 + G A SKCM 60768365 + 60768345 60768385 41 AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCAT AACTACTCCAACTGGGGGCCCCCGAGCTTGGGCCCCAGCAT < 41bp 1 0.362931082720499 1 0.681836485862732 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768365 chr17:60768369 nonsynonymous SNV 0.710 2 25 hm5C_associated_SNPs_34757 0 0 1 0 1 Cytosol 1 0.50023164392109 0.636327028274536 0.99953671215782 hm5C_site_34524 DeepMRMD:0.636327028274536;iRNA_m5C:0.99953671215782 34525 chr17 60768369 60768369 1 + G A SKCM 60768377 + 60768357 60768397 41 TGGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAA TGGGGGCCCCCGAGCTTGGGCCCCAGCATGCTGAGCCACAA < 41bp 1 0.323000308832228 1 0.127879410982132 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768377 chr17:60768369 nonsynonymous SNV 0.710 2 13 hm5C_associated_SNPs_34758 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34525 DeepMRMD:1;iRNA_m5C:0.999536712157815 34526 chr17 60768369 60768369 1 + G A SKCM 60768378 + 60768358 60768398 41 GGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAAC GGGGGCCCCCGAGCTTGGGCCCCAGCATGCTGAGCCACAAC < 41bp 1 0.0949505886970541 1 0.225799798965454 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768378 chr17:60768369 nonsynonymous SNV 0.710 2 12 hm5C_associated_SNPs_34759 0 0 1 0 1 Cytosol 1 0.50023164392111 1 0.99953671215778 hm5C_site_34526 DeepMRMD:1;iRNA_m5C:0.99953671215778 34527 chr17 60768369 60768369 1 + G A SKCM 60768379 + 60768359 60768399 41 GGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACA GGGGCCCCCGAGCTTGGGCCCCAGCATGCTGAGCCACAACA < 41bp 1 0.0734559107925894 1 0.243198812007904 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768379 chr17:60768369 nonsynonymous SNV 0.710 2 11 hm5C_associated_SNPs_34760 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34527 DeepMRMD:1;iRNA_m5C:0.999536712157815 34528 chr17 60768369 60768369 1 + G A SKCM 60768380 + 60768360 60768400 41 GGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAG GGGCCCCCGAGCTTGGGCCCCAGCATGCTGAGCCACAACAG < 41bp 1 0.578622424381466 1 0.461019158363342 experiment 0.842755151237067 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768380 chr17:60768369 nonsynonymous SNV 0.710 2 10 hm5C_associated_SNPs_34761 0 0 1 0 1 Cytosol 1 0.500231643938741 1 0.999536712122518 hm5C_site_34528 DeepMRMD:1;iRNA_m5C:0.999536712122518 34529 chr8 61757427 61757427 1 + G A SKCM 61757430 + 61757410 61757450 41 ATTTGCTTTGCAGTTGGGGACGGTGGACAGACATTCTTTCC ATTTGCTTTGCAGTTGGAGACGGTGGACAGACATTCTTTCC < 41bp 1 0.258037527934663 1 0.785477638244629 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61757430 chr8:61757427 nonsynonymous SNV 0.992 4 18 hm5C_associated_SNPs_34762 0 0 1 0 1 Cytosol 1 0.500231643920362 0.429044723510742 0.999536712159276 hm5C_site_34529 DeepMRMD:0.429044723510742;iRNA_m5C:0.999536712159276 34530 chr8 61757428 61757428 1 + G A SKCM 61757430 + 61757410 61757450 41 ATTTGCTTTGCAGTTGGGGACGGTGGACAGACATTCTTTCC ATTTGCTTTGCAGTTGGGAACGGTGGACAGACATTCTTTCC < 41bp 1 0.219752587329356 1 0.52889484167099 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61757430 chr8:61757428 nonsynonymous SNV 0.991 4 19 hm5C_associated_SNPs_34763 0 0 1 0 1 Cytosol 1 0.500231643921063 0.94221031665802 0.999536712157875 hm5C_site_34530 DeepMRMD:0.94221031665802;iRNA_m5C:0.999536712157875 34531 chr7 69064838 69064838 1 + C T SKCM 69064849 + 69064829 69064869 41 TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG TCCTCCGCCTCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG < 41bp 1 0.166173370165453 1 0.0305924117565155 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064849 chr7:69064838 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_34764 0 0 0 0 0 Nucleus 1 0.500231643920302 1 0.999536712159397 hm5C_site_34531 DeepMRMD:1;iRNA_m5C:0.999536712159397 34532 chr10 76468125 76468125 1 + C T SKCM 76468126 + 76468106 76468146 41 AGCCTCTGACTGAATGTATCCGTGCTGGCCACTATGCAGCA AGCCTCTGACTGAATGTATTCGTGCTGGCCACTATGCAGCA < 41bp 1 0.462971443612438 1 0.780782341957092 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADK ENSG00000156110 CDS Human protein_coding chr10:76468126 chr10:76468125 synonymous SNV . 0 20 hm5C_associated_SNPs_34765 0 0 1 0 1 Ribosome 1 0.500230698592006 0.438435316085816 0.999538602815987 hm5C_site_34532 DeepMRMD:0.438435316085816;iRNA_m5C:0.999538602815987 34533 chr12 112130549 112130549 1 + C T SKCM 112130547 + 112130527 112130567 41 GCTGTTTCCAGTCCCCCCGTCTCCAGTGGGTGTGGAGAACA GCTGTTTCCAGTCCCCCCGTCTTCAGTGGGTGTGGAGAACA < 41bp 1 0.48271410944514 1 0.73139625787735 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACAD10 ENSG00000111271 CDS Human protein_coding chr12:112130547 chr12:112130549 synonymous SNV . 0 23 hm5C_associated_SNPs_34766 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644676573 0.5372074842453 0.999536710646854 hm5C_site_34533 DeepMRMD:0.5372074842453;iRNA_m5C:0.999536710646854 34534 chrX 70357586 70357586 1 + C T SKCM 70357578 + 70357558 70357598 41 TCTCCTTCTTCCCTCCAGGGCTATACTCCTTATGTTTCTCA TCTCCTTCTTCCCTCCAGGGCTATACTCTTTATGTTTCTCA < 41bp 1 0.0950973270215684 1 0.0875484049320221 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70357578 chrX:70357586 nonsynonymous SNV 0.998 1 29 hm5C_associated_SNPs_34767 0 0 1 0 2 Cytosol 1 0.50023164392029 1 0.99953671215942 hm5C_site_34534 DeepMRMD:1;iRNA_m5C:0.99953671215942 34535 chr2 99999343 99999343 1 + C T SKCM 99999336 + 99999316 99999356 41 CCCCAGACAATTGAGTCTATCAACCTTCTCAAATCTAAAAA CCCCAGACAATTGAGTCTATCAACCTTTTCAAATCTAAAAA < 41bp 1 0.392142249367465 1 0.354019433259964 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99999336 chr2:99999343 nonsynonymous SNV 0.991 3 28 hm5C_associated_SNPs_34768 0 0 1 0 1 Ribosome 1 0.5002316439211 1 0.999536712157801 hm5C_site_34535 DeepMRMD:1;iRNA_m5C:0.999536712157801 34536 chr2 128178923 128178923 1 + C T SKCM 128178922 + 128178902 128178942 41 GATCCGCAAACGTGCCAACTCCTTCCTGGAGGAGCTCCGTC GATCCGCAAACGTGCCAACTCTTTCCTGGAGGAGCTCCGTC < 41bp 1 0.152596575151326 1 0.0550442934036255 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PROC ENSG00000115718 CDS Human protein_coding chr2:128178922 chr2:128178923 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_34769 0 0 1 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34536 DeepMRMD:1;iRNA_m5C:0.999536712157815 34537 chr16 24826599 24826599 1 + G A SKCM 24826598 + 24826578 24826618 41 CCACGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTG CCACGTGCCAAATCGCCTAACAGCTCTAGCAGTGTTAATTG < 41bp 1 0.375821102326917 1 0.0647346675395966 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24826598 chr16:24826599 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_34770 0 0 1 0 1 Nucleus 1 0.500232012213815 1 0.99953597557237 hm5C_site_34537 DeepMRMD:1;iRNA_m5C:0.99953597557237 34538 chr20 6750995 6750995 1 + G A SKCM 6750992 + 6750972 6751012 41 CCCACCCCCAGCAGGGACGCCGTGGTGCCCCCCTACATGCT CCCACCCCCAGCAGGGACGCCGTAGTGCCCCCCTACATGCT < 41bp 1 0.295671262119947 1 0.178954005241394 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMP2 ENSG00000125845 CDS Human protein_coding chr20:6750992 chr20:6750995 synonymous SNV . 0 24 hm5C_associated_SNPs_34771 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34538 DeepMRMD:1;iRNA_m5C:0.999536712157815 34539 chrX 73046551 73046551 1 + C T SKCM 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA GAAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA < 41bp 1 0.263026046925757 1 0.462346166372299 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046551 . . 0 2 hm5C_associated_SNPs_34772 0 0 1 0 0 unknown 1 0.500231643918485 1 0.99953671216303 hm5C_site_34539 DeepMRMD:1;iRNA_m5C:0.99953671216303 34540 chrX 73046551 73046551 1 + C T SKCM 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CGAAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG < 41bp 1 0.246743071701775 1 0.279744148254395 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046551 . . 0 3 hm5C_associated_SNPs_34773 0 0 1 0 0 unknown 1 0.500231643921096 1 0.999536712157808 hm5C_site_34540 DeepMRMD:1;iRNA_m5C:0.999536712157808 34541 chrX 73046551 73046551 1 + C T SKCM 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCGAAATCTGGAGGCCCATGACCCAGAACCCAGGAA < 41bp 1 0.0544740444783091 1 0.133994191884995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046551 . . 0 9 hm5C_associated_SNPs_34774 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_34541 DeepMRMD:1;iRNA_m5C:0.999536712157815 34542 chr16 24826600 24826600 1 + G A SKCM 24826598 + 24826578 24826618 41 CCACGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTG CCACGTGCCAAATCGCCTAACGACTCTAGCAGTGTTAATTG < 41bp 1 0.298289880258733 1 0.0376015901565552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24826598 chr16:24826600 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_34776 0 0 1 0 1 Nucleus 1 0.500231643928864 1 0.999536712142273 hm5C_site_34542 DeepMRMD:1;iRNA_m5C:0.999536712142273 34543 chrX 153628212 153628212 1 + A T SKCM 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATTTCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT < 41bp 1 0.352011339202007 1 0.0415612757205963 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628212 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_34778 0 0 1 0 1 Cytosol 1 0.500231641326379 1 0.999536717347242 hm5C_site_34543 DeepMRMD:1;iRNA_m5C:0.999536717347242 34544 chr1 223943208 223943208 1 + C T SKCM 223943200 + 223943180 223943220 41 AGACACATTCTGGATGAACCCTCAGTACCTGATCAAGCTGG AGACACATTCTGGATGAACCCTCAGTACTTGATCAAGCTGG < 41bp 1 0.653918070857085 1 0.367838799953461 experiment 0.692163858285831 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943200 chr1:223943208 synonymous SNV . 0 29 hm5C_associated_SNPs_34779 0 0 1 0 1 Ribosome 1 0.500231643059944 1 0.999536713880112 hm5C_site_34544 DeepMRMD:1;iRNA_m5C:0.999536713880112 34545 chr1 223943208 223943208 1 + C T SKCM 223943207 + 223943187 223943227 41 TTCTGGATGAACCCTCAGTACCTGATCAAGCTGGAGGAGGA TTCTGGATGAACCCTCAGTACTTGATCAAGCTGGAGGAGGA < 41bp 1 0.671885437563073 1 0.204691469669342 experiment 0.656229124873854 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943207 chr1:223943208 synonymous SNV . 0 22 hm5C_associated_SNPs_34780 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34545 DeepMRMD:1;iRNA_m5C:0.999536712157815 34546 chrX 153628213 153628213 1 + T C SKCM 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATACCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT < 41bp 1 0.347244782905972 1 0.0330245792865753 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628213 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_34781 0 0 1 0 1 Cytosol 1 0.500231643921287 1 0.999536712157425 hm5C_site_34546 DeepMRMD:1;iRNA_m5C:0.999536712157425 34547 chr7 6631409 6631409 1 + A T SKCM 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACTGCCGGATGAGCT < 41bp 1 0.14377979894489 1 0.278095632791519 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631409 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_34782 0 0 1 0 2 chromatin 1 0.500231643873726 1 0.999536712252547 hm5C_site_34547 DeepMRMD:1;iRNA_m5C:0.999536712252547 34548 chr7 6631409 6631409 1 + A T SKCM 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACTGCCGGATGAGCTT < 41bp 1 0.425456823992094 1 0.476600766181946 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631409 nonsynonymous SNV 0.999 2 28 hm5C_associated_SNPs_34783 0 0 1 0 2 chromatin 1 0.500231643921085 1 0.99953671215783 hm5C_site_34548 DeepMRMD:1;iRNA_m5C:0.99953671215783 34549 chr19 44515263 44515263 1 + C T SKCM 44515278 + 44515258 44515298 41 GAATCCACAGTGGAGAAAAACCATACAGATGTGAGGAGTGT GAATCTACAGTGGAGAAAAACCATACAGATGTGAGGAGTGT < 41bp 1 0.275670932849623 1 0.0909391939640045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF230 ENSG00000159882 CDS Human protein_coding chr19:44515278 chr19:44515263 nonsynonymous SNV 0.013 3 6 hm5C_associated_SNPs_34785 0 0 1 0 0 cytosol 1 0.500231611559982 1 0.999536776880035 hm5C_site_34549 DeepMRMD:1;iRNA_m5C:0.999536776880035 34550 chr7 135328088 135328088 1 + C T SKCM 135328068 + 135328048 135328088 41 GACAGAGTGTCAGCAAGCTACAAAATGTAGAGCAGCTTCCC GACAGAGTGTCAGCAAGCTACAAAATGTAGAGCAGCTTCCT < 41bp 1 0.408863788503207 1 0.180196106433868 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135328068 chr7:135328088 synonymous SNV . 0 41 hm5C_associated_SNPs_34786 0 0 1 0 1 Cytosol 1 0.500231700187508 1 0.999536599624985 hm5C_site_34550 DeepMRMD:1;iRNA_m5C:0.999536599624985 34551 chr13 76382250 76382250 1 + C T SKCM 76382234 + 76382214 76382254 41 GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCTG GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCTCCTG < 41bp 1 0.227123357340215 1 0.714375019073486 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76382234 chr13:76382250 nonsynonymous SNV 0.995 1 37 hm5C_associated_SNPs_34787 0 0 1 0 1 Cytosol 1 0.500231643921092 0.571249961853028 0.999536712157815 hm5C_site_34551 DeepMRMD:0.571249961853028;iRNA_m5C:0.999536712157815 34552 chr2 74328497 74328497 1 + C T SKCM 74328499 + 74328479 74328519 41 ACCTCGGCCTTGGCTGGGCCCAGCCTGACTGAGAAGCCGTG ACCTCGGCCTTGGCTGGGTCCAGCCTGACTGAGAAGCCGTG < 41bp 1 0.209900485938981 1 0.0550350546836853 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74328499 chr2:74328497 nonsynonymous SNV 0.552 0 19 hm5C_associated_SNPs_34788 0 0 1 0 0 Cytosol 1 0.500231836558076 1 0.999536326883848 hm5C_site_34552 DeepMRMD:1;iRNA_m5C:0.999536326883848 34553 chr5 150867572 150867572 1 + G A SKCM 150867554 + 150867534 150867574 41 CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCTGGA CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCTAGA < 41bp 1 0.0816219343898954 1 0.017558753490448 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867554 chr5:150867572 synonymous SNV . 0 39 hm5C_associated_SNPs_34789 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164641781 1 0.999536707164379 hm5C_site_34553 DeepMRMD:1;iRNA_m5C:0.999536707164379 34554 chr9 18721637 18721637 1 + C T SKCM 18721629 + 18721609 18721649 41 GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT GCCGCCGGCCCCCACAGCTCCTGAAGTCTTGCAATTTGGAT < 41bp 1 0.400916424659498 1 0.269129693508148 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18721629 chr9:18721637 synonymous SNV . 0 29 hm5C_associated_SNPs_34790 0 0 0 0 1 Nucleus 1 0.500231643920669 1 0.999536712158663 hm5C_site_34554 DeepMRMD:1;iRNA_m5C:0.999536712158663 34555 chr17 78318516 78318516 1 + C T SKCM 78318498 + 78318478 78318518 41 CGTACACGTGTACCCCAGTTCAGTTTTCTTGACATCTTCCC CGTACACGTGTACCCCAGTTCAGTTTTCTTGACATCTTTCC < 41bp 1 0.0497480905100623 1 0.0303457081317902 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78318498 chr17:78318516 synonymous SNV . 0 39 hm5C_associated_SNPs_34791 0 0 1 0 0 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_34555 DeepMRMD:1;iRNA_m5C:0.999536712157812 34556 chr5 139893013 139893013 1 + A T SKCM 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTGTGAAGGCTAAAGACCAGCAAGCTGCTGAAGCAAATAAG < 41bp 1 0.161588358505172 1 0.288991421461105 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139893013 synonymous SNV . 0 29 hm5C_associated_SNPs_34792 0 0 1 0 2 unknown 1 0.500231643921031 1 0.999536712157937 hm5C_site_34556 DeepMRMD:1;iRNA_m5C:0.999536712157937 34557 chr5 139494086 139494086 1 + C T SKCM 139494074 + 139494054 139494094 41 CAAGAGCCGCCTTACTCTCTCCATGTCAGTGGCCGTGGAGT CAAGAGCCGCCTTACTCTCTCCATGTCAGTGGTCGTGGAGT < 41bp 1 0.210573475856895 1 0.256095588207245 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PURA ENSG00000185129 CDS Human protein_coding chr5:139494074 chr5:139494086 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_34793 0 0 1 0 0 Ribosome 1 0.50023166435649 1 0.999536671287019 hm5C_site_34557 DeepMRMD:1;iRNA_m5C:0.999536671287019 34558 chr1 22333383 22333383 1 + C T SKCM 22333371 + 22333351 22333391 41 GACTGTTCCCTCCTCCCCAGCAATGACATCGCCCTCATCAA GACTGTTCCCTCCTCCCCAGCAATGACATCGCTCTCATCAA < 41bp 1 0.237173482436407 1 0.0481081604957581 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333371 chr1:22333383 synonymous SNV . 0 33 hm5C_associated_SNPs_34794 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920913 1 0.999536712158174 hm5C_site_34558 DeepMRMD:1;iRNA_m5C:0.999536712158174 34559 chr1 22333383 22333383 1 + C T SKCM 22333377 + 22333357 22333397 41 TCCCTCCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTC TCCCTCCTCCCCAGCAATGACATCGCTCTCATCAAGCTCTC < 41bp 1 0.404137262250647 1 0.101272165775299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333377 chr1:22333383 synonymous SNV . 0 27 hm5C_associated_SNPs_34795 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921135 1 0.999536712157731 hm5C_site_34559 DeepMRMD:1;iRNA_m5C:0.999536712157731 34560 chr1 22333383 22333383 1 + C T SKCM 22333380 + 22333360 22333400 41 CTCCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACG CTCCTCCCCAGCAATGACATCGCTCTCATCAAGCTCTCACG < 41bp 1 0.154210974883778 1 0.187789350748062 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333380 chr1:22333383 synonymous SNV . 0 24 hm5C_associated_SNPs_34796 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34560 DeepMRMD:1;iRNA_m5C:0.999536712157815 34561 chr1 22333383 22333383 1 + C T SKCM 22333382 + 22333362 22333402 41 CCTCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCA CCTCCCCAGCAATGACATCGCTCTCATCAAGCTCTCACGCA < 41bp 1 0.292306081638955 1 0.0354299545288086 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333382 chr1:22333383 synonymous SNV . 0 22 hm5C_associated_SNPs_34797 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921087 1 0.999536712157826 hm5C_site_34561 DeepMRMD:1;iRNA_m5C:0.999536712157826 34562 chr1 22333383 22333383 1 + C T SKCM 22333384 + 22333364 22333404 41 TCCCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGC TCCCCAGCAATGACATCGCTCTCATCAAGCTCTCACGCAGC < 41bp 1 0.289871870539192 1 0.0387196838855743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333384 chr1:22333383 synonymous SNV . 0 20 hm5C_associated_SNPs_34798 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642185037 1 0.999536715629927 hm5C_site_34562 DeepMRMD:1;iRNA_m5C:0.999536715629927 34563 chr1 22333383 22333383 1 + C T SKCM 22333386 + 22333366 22333406 41 CCCAGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGC CCCAGCAATGACATCGCTCTCATCAAGCTCTCACGCAGCGC < 41bp 1 0.633827143852694 1 0.371434330940247 experiment 0.732345712294611 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333386 chr1:22333383 synonymous SNV . 0 18 hm5C_associated_SNPs_34799 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644759844 1 0.999536710480311 hm5C_site_34563 DeepMRMD:1;iRNA_m5C:0.999536710480311 34564 chr1 22333383 22333383 1 + C T SKCM 22333389 + 22333369 22333409 41 AGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCA AGCAATGACATCGCTCTCATCAAGCTCTCACGCAGCGCCCA < 41bp 1 0.589094252908227 1 0.858426511287689 experiment 0.821811494183546 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333389 chr1:22333383 synonymous SNV . 0 15 hm5C_associated_SNPs_34800 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921333 0.283146977424622 0.999536712157334 hm5C_site_34564 DeepMRMD:0.283146977424622;iRNA_m5C:0.999536712157334 34565 chr1 22333383 22333383 1 + C T SKCM 22333393 + 22333373 22333413 41 ATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTG ATGACATCGCTCTCATCAAGCTCTCACGCAGCGCCCAGCTG < 41bp 1 0.2317621065054 1 0.0304391086101532 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333393 chr1:22333383 synonymous SNV . 0 11 hm5C_associated_SNPs_34801 0 0 0 0 1 Endoplasmic reticulum 1 0.500231639324256 1 0.999536721351487 hm5C_site_34565 DeepMRMD:1;iRNA_m5C:0.999536721351487 34566 chr1 22333383 22333383 1 + C T SKCM 22333395 + 22333375 22333415 41 GACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGG GACATCGCTCTCATCAAGCTCTCACGCAGCGCCCAGCTGGG < 41bp 1 0.252940154829852 1 0.176715344190598 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333395 chr1:22333383 synonymous SNV . 0 9 hm5C_associated_SNPs_34802 0 0 0 0 1 Endoplasmic reticulum 1 0.500231641829009 1 0.999536716341981 hm5C_site_34566 DeepMRMD:1;iRNA_m5C:0.999536716341981 34567 chr1 22333383 22333383 1 + C T SKCM 22333397 + 22333377 22333417 41 CATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAG CATCGCTCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAG < 41bp 1 0.562095871673356 1 0.257010400295258 experiment 0.875808256653288 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333397 chr1:22333383 synonymous SNV . 0 7 hm5C_associated_SNPs_34803 0 0 0 0 1 Endoplasmic reticulum 1 0.500231642531578 1 0.999536714936844 hm5C_site_34567 DeepMRMD:1;iRNA_m5C:0.999536714936844 34568 chr1 22333383 22333383 1 + C T SKCM 22333399 + 22333379 22333419 41 TCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT TCGCTCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGAT < 41bp 1 0.573988860652597 1 0.174940884113312 experiment 0.852022278694805 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333399 chr1:22333383 synonymous SNV . 0 5 hm5C_associated_SNPs_34804 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644161049 1 0.999536711677903 hm5C_site_34568 DeepMRMD:1;iRNA_m5C:0.999536711677903 34569 chr22 29622514 29622514 1 + G A SKCM 29622517 + 29622497 29622537 41 AAGTGTCAGAGCTGACAGAGCGGCTGAAGGTGCTGGAGGCC AAGTGTCAGAGCTGACAAAGCGGCTGAAGGTGCTGGAGGCC < 41bp 1 0.554394335556629 1 0.732047915458679 experiment 0.891211328886742 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EMID1 ENSG00000186998 CDS Human protein_coding chr22:29622517 chr22:29622514 nonsynonymous SNV 0.902 0 18 hm5C_associated_SNPs_34806 0 0 1 0 2 chromatin 1 0.500231643273857 0.535904169082642 0.999536713452287 hm5C_site_34569 DeepMRMD:0.535904169082642;iRNA_m5C:0.999536713452287 34570 chr2 99156085 99156085 1 + C T SKCM 99156084 + 99156064 99156104 41 GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGCAGT GATGGCAGAGAGCGTGCTCTCTCTGCACGTGCCCCGGCAGT < 41bp 1 0.618477624274711 1 0.802982211112976 experiment 0.763044751450578 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99156084 chr2:99156085 synonymous SNV . 0 22 hm5C_associated_SNPs_34807 0 0 1 0 1 Ribosome 1 0.50023165029774 0.394035577774048 0.99953669940452 hm5C_site_34570 DeepMRMD:0.394035577774048;iRNA_m5C:0.99953669940452 34571 chr10 118314748 118314748 1 + C T SKCM 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGGCACACCTGAATTAGTCCGATTGGACCCTAGCGATGC < 41bp 1 0.376754933153757 1 0.239794462919235 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314748 synonymous SNV . 0 33 hm5C_associated_SNPs_34808 0 0 0 0 1 unknown 1 0.500231642120182 1 0.999536715759637 hm5C_site_34571 DeepMRMD:1;iRNA_m5C:0.999536715759637 34572 chr10 118314748 118314748 1 + C T SKCM 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGGCACACCTGAATTAGTCCGATTGGACCCTAGCGATGCC < 41bp 1 0.268572418047461 1 0.169456720352173 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314748 synonymous SNV . 0 32 hm5C_associated_SNPs_34809 0 0 0 0 1 unknown 1 0.500231643921235 1 0.99953671215753 hm5C_site_34572 DeepMRMD:1;iRNA_m5C:0.99953671215753 34573 chr10 118314748 118314748 1 + C T SKCM 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCGATTGGACCCTAGCGATGCCAAATTTGT < 41bp 1 0.305086489889315 1 0.0360769629478455 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314748 synonymous SNV . 0 24 hm5C_associated_SNPs_34810 0 0 0 0 1 unknown 1 0.500231643911388 1 0.999536712177225 hm5C_site_34573 DeepMRMD:1;iRNA_m5C:0.999536712177225 34574 chr10 118314748 118314748 1 + C T SKCM 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCGATTGGACCCTAGCGATGCCAAATTTGTG < 41bp 1 0.0545059742310904 1 0.117569386959076 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314748 synonymous SNV . 0 23 hm5C_associated_SNPs_34811 0 0 0 0 1 unknown 1 0.500231643918655 1 0.99953671216269 hm5C_site_34574 DeepMRMD:1;iRNA_m5C:0.99953671216269 34575 chr10 118314748 118314748 1 + C T SKCM 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCGATTGGACCCTAGCGATGCCAAATTTGTGG < 41bp 1 0.540745523485114 1 0.0988709926605225 experiment 0.918508953029772 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314748 synonymous SNV . 0 22 hm5C_associated_SNPs_34812 0 0 0 0 1 unknown 1 0.50023164392111 1 0.99953671215778 hm5C_site_34575 DeepMRMD:1;iRNA_m5C:0.99953671215778 34576 chr10 118314748 118314748 1 + C T SKCM 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCGATTGGACCCTAGCGATGCCAAATTTGTGGATGT < 41bp 1 0.405370181670955 1 0.279937863349915 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314748 synonymous SNV . 0 18 hm5C_associated_SNPs_34813 0 0 0 0 1 unknown 1 0.500231639991882 1 0.999536720016236 hm5C_site_34576 DeepMRMD:1;iRNA_m5C:0.999536720016236 34577 chr10 118314748 118314748 1 + C T SKCM 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCGATTGGACCCTAGCGATGCCAAATTTGTGGATGTAATTC < 41bp 1 0.337193305176083 1 0.056604415178299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314748 synonymous SNV . 0 13 hm5C_associated_SNPs_34814 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_34577 DeepMRMD:1;iRNA_m5C:0.999536712157815 34578 chr10 118314748 118314748 1 + C T SKCM 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CGATTGGACCCTAGCGATGCCAAATTTGTGGATGTAATTCA < 41bp 1 0.357812427904366 1 0.266541600227356 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314748 synonymous SNV . 0 12 hm5C_associated_SNPs_34815 0 0 0 0 1 unknown 1 0.500231643927445 1 0.99953671214511 hm5C_site_34578 DeepMRMD:1;iRNA_m5C:0.99953671214511 34579 chr17 1637434 1637434 1 + C T SKCM 1637447 + 1637427 1637467 41 GCGTCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG GCGTCTTTTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG < 41bp 1 0.594825503750439 1 0.374053031206131 experiment 0.810348992499123 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1637447 chr17:1637434 synonymous SNV . 0 8 hm5C_associated_SNPs_34816 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34579 DeepMRMD:1;iRNA_m5C:0.999536712157815 34580 chr21 37785199 37785199 1 + T G SKCM 37785214 + 37785194 37785234 41 TGCCTTCCTGGCCATTTCTTCCACGGACGGTTACTGCTCAT TGCCTGCCTGGCCATTTCTTCCACGGACGGTTACTGCTCAT < 41bp 1 0.372295582716416 1 0.247886419296265 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37785214 chr21:37785199 nonsynonymous SNV 0.988 4 6 hm5C_associated_SNPs_34817 0 0 1 0 1 Ribosome 1 0.500231643920461 1 0.999536712159077 hm5C_site_34580 DeepMRMD:1;iRNA_m5C:0.999536712159077 34581 chr3 150264610 150264610 1 + C T SKCM 150264597 + 150264577 150264617 41 TTTCCGGGACAACATGGCGCCGTCCACGCCGCTCTTGACAG TTTCCGGGACAACATGGCGCCGTCCACGCCGCTTTTGACAG < 41bp 1 0.19489291985375 1 0.118578523397446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2A ENSG00000144895 CDS Human protein_coding chr3:150264597 chr3:150264610 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_34818 0 0 1 0 1 Cytosol 1 0.500231643794083 1 0.999536712411834 hm5C_site_34581 DeepMRMD:1;iRNA_m5C:0.999536712411834 34582 chr11 73078666 73078666 1 + C T SKCM 73078683 + 73078663 73078703 41 CTCCCCTTGGCACCGAGGCCCCGCCCCTGCCAGGCCTAAAA CTCTCCTTGGCACCGAGGCCCCGCCCCTGCCAGGCCTAAAA < 41bp 1 0.0383623946447263 1 0.138228833675385 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73078683 chr11:73078666 synonymous SNV . 0 4 hm5C_associated_SNPs_34819 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34582 DeepMRMD:1;iRNA_m5C:0.999536712157815 34583 chr15 41191790 41191790 1 + C T SKCM 41191805 + 41191785 41191825 41 CCATTCCGTGAGTTTCCCAGCAACCTGGGCTACAGTGAGTT CCATTTCGTGAGTTTCCCAGCAACCTGGGCTACAGTGAGTT < 41bp 1 0.218598948176709 1 0.0647494792938232 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41191805 chr15:41191790 synonymous SNV . 0 6 hm5C_associated_SNPs_34820 0 0 1 0 0 chromatin 1 0.500231643920869 1 0.999536712158261 hm5C_site_34583 DeepMRMD:1;iRNA_m5C:0.999536712158261 34584 chr6 29910549 29910549 1 + G A SKCM 29910541 + 29910521 29910561 41 TGCTCGCCCCCAGGCTCCCACTCCATGAGGTATTTCTTCAC TGCTCGCCCCCAGGCTCCCACTCCATGAAGTATTTCTTCAC < 41bp 1 0.642095890026644 1 0.983573198318481 experiment 0.715808219946712 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29910541 chr6:29910549 nonsynonymous SNV 0.037 1 29 hm5C_associated_SNPs_34821 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164392663 0.032853603363038 0.99953671214674 hm5C_site_34584 DeepMRMD:0.032853603363038;iRNA_m5C:0.99953671214674 34585 chr4 3319336 3319336 1 + C T SKCM 3319346 + 3319326 3319366 41 TGTCCGGACCCCGAAGGGAGCCCCCCATTTGAGGCCGCTCA TGTCCGGACCTCGAAGGGAGCCCCCCATTTGAGGCCGCTCA < 41bp 1 0.0990447153847529 1 0.22150793671608 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3319346 chr4:3319336 nonsynonymous SNV 0.007 0 11 hm5C_associated_SNPs_34822 0 0 1 0 0 Nucleus 1 0.500231643885814 1 0.999536712228372 hm5C_site_34585 DeepMRMD:1;iRNA_m5C:0.999536712228372 34586 chr8 145697783 145697783 1 + G A SKCM 145697780 + 145697760 145697800 41 GGGCCTCCCGAGCGCCTGGCCGTGAGGCAGGGCCCAGAAGG GGGCCTCCCGAGCGCCTGGCCGTAAGGCAGGGCCCAGAAGG < 41bp 1 0.488357998274231 1 0.389114856719971 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145697780 chr8:145697783 synonymous SNV . 0 24 hm5C_associated_SNPs_34823 0 0 1 0 2 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34586 DeepMRMD:1;iRNA_m5C:0.999536712157815 34587 chrX 153038448 153038448 1 + C T SKCM 153038439 + 153038419 153038459 41 CTCCAGACAGGTGGCAACACCAGTGCCTTCGTGGGTGGCCA CTCCAGACAGGTGGCAACACCAGTGCCTTTGTGGGTGGCCA < 41bp 1 0.288927420998584 1 0.486200600862503 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153038439 chrX:153038448 synonymous SNV . 0 30 hm5C_associated_SNPs_34824 0 0 0 0 1 Endoplasmic reticulum 1 0.500231634117243 1 0.999536731765514 hm5C_site_34587 DeepMRMD:1;iRNA_m5C:0.999536731765514 34588 chr11 63706495 63706495 1 + G A SKCM 63706484 + 63706464 63706504 41 TTGCAGGGCCGTCCGCTCTGCTGCCGCCGCTGTTGCAGCCA TTGCAGGGCCGTCCGCTCTGCTGCCGCCGCTATTGCAGCCA < 41bp 1 0.510773763827399 1 0.449630916118622 experiment 0.978452472345202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA40 ENSG00000110583 UTR5 Human protein_coding chr11:63706484 chr11:63706495 . . 0 32 hm5C_associated_SNPs_34825 0 0 1 0 1 Ribosome 1 0.500231643943624 1 0.999536712112752 hm5C_site_34588 DeepMRMD:1;iRNA_m5C:0.999536712112752 34589 chrX 47065744 47065744 1 + C T SKCM 47065738 + 47065718 47065758 41 GGCAATGTGCAGGTGGTGATCCCCTTCCTGACAGAGTCGTA GGCAATGTGCAGGTGGTGATCCCCTTTCTGACAGAGTCGTA < 41bp 1 0.365479976179978 1 0.0545131862163544 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47065738 chrX:47065744 synonymous SNV . 0 27 hm5C_associated_SNPs_34826 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34589 DeepMRMD:1;iRNA_m5C:0.999536712157815 34590 chr7 142459664 142459664 1 + C T SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGGAGAGCACAACATCGAAGTTCTGGAGGGGAA < 41bp 1 0.645519965045693 1 0.148171156644821 experiment 0.708960069908614 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459664 synonymous SNV . 0 30 hm5C_associated_SNPs_34828 0 0 0 0 1 Cytosol 1 0.500231643926561 1 0.999536712146878 hm5C_site_34590 DeepMRMD:1;iRNA_m5C:0.999536712146878 34591 chr7 142459664 142459664 1 + C T SKCM 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTTCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG < 41bp 1 0.510208745604068 1 0.357251524925232 experiment 0.979582508791864 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459664 synonymous SNV . 0 5 hm5C_associated_SNPs_34830 0 0 0 0 1 Cytosol 1 0.500231643921123 1 0.999536712157755 hm5C_site_34591 DeepMRMD:1;iRNA_m5C:0.999536712157755 34592 chr19 1434818 1434818 1 + C T SKCM 1434836 + 1434816 1434856 41 TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG TCTGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG < 41bp 1 0.349289704880862 1 0.186862111091614 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434836 chr19:1434818 synonymous SNV . 0 3 hm5C_associated_SNPs_34832 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_34592 DeepMRMD:1;iRNA_m5C:0.999536712157815 34593 chr19 1434818 1434818 1 + C T SKCM 1434837 + 1434817 1434857 41 CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC CTGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC < 41bp 1 0.371093649761533 1 0.147155970335007 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434837 chr19:1434818 synonymous SNV . 0 2 hm5C_associated_SNPs_34833 0 0 1 0 1 chromatin 1 0.500231643921083 1 0.999536712157833 hm5C_site_34593 DeepMRMD:1;iRNA_m5C:0.999536712157833 34594 chr19 1434818 1434818 1 + C T SKCM 1434838 + 1434818 1434858 41 CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT TGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT < 41bp 1 0.511401314245762 1 0.462335526943207 experiment 0.977197371508476 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434838 chr19:1434818 synonymous SNV . 0 1 hm5C_associated_SNPs_34834 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_34594 DeepMRMD:1;iRNA_m5C:0.999536712157815 34595 chr13 115089945 115089945 1 + C T SKCM 115089952 + 115089932 115089972 41 AGAACCACAGAAACCTGCCCCTGTATCTCCTGAGTCAGTAA AGAACCACAGAAATCTGCCCCTGTATCTCCTGAGTCAGTAA < 41bp 1 0.477340492274447 1 0.666405916213989 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115089952 chr13:115089945 nonsynonymous SNV 0.746 0 14 hm5C_associated_SNPs_34835 0 0 1 0 0 nucleus 1 0.500231643921093 0.667188167572022 0.999536712157814 hm5C_site_34595 DeepMRMD:0.667188167572022;iRNA_m5C:0.999536712157814 34596 chr12 132400481 132400481 1 + G A SKCM 132400500 + 132400480 132400520 41 TGCCGCCTGCACAGCGCCCCCAACCTGTCTGACTTGCACGT TACCGCCTGCACAGCGCCCCCAACCTGTCTGACTTGCACGT < 41bp 1 0.197189526213167 1 0.0763790607452393 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ULK1 ENSG00000177169 CDS Human protein_coding chr12:132400500 chr12:132400481 nonsynonymous SNV 0.940 0 2 hm5C_associated_SNPs_34836 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34596 DeepMRMD:1;iRNA_m5C:0.999536712157815 34597 chr19 42398370 42398370 1 + C T SKCM 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAAGAAGTCGGGGAGGAACTTCTTTCGGAAAAAGGTGCT < 41bp 1 0.178998149186766 1 0.519497632980347 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398370 synonymous SNV . 0 27 hm5C_associated_SNPs_34837 0 0 0 0 2 Cytosol 1 0.500231643921141 0.961004734039306 0.999536712157718 hm5C_site_34597 DeepMRMD:0.961004734039306;iRNA_m5C:0.999536712157718 34598 chr1 155028639 155028639 1 + C T SKCM 155028630 + 155028610 155028650 41 CAGCGTGACCTGGTGGAGATCAGCCCAAACCCAGCTGTCAC CAGCGTGACCTGGTGGAGATCAGCCCAAATCCAGCTGTCAC < 41bp 1 0.552728572014931 1 0.410055309534073 experiment 0.894542855970138 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155028630 chr1:155028639 synonymous SNV . 0 30 hm5C_associated_SNPs_34838 0 0 1 1 1 Ribosome 1 0.500231643850915 1 0.99953671229817 hm5C_site_34598 DeepMRMD:1;iRNA_m5C:0.99953671229817 34599 chr5 139917070 139917070 1 + G A SKCM 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCAAATTC < 41bp 1 0.280689256979652 1 0.535064041614532 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917070 nonsynonymous SNV 0.996 4 36 hm5C_associated_SNPs_34840 0 0 1 0 1 unknown 1 0.500231643921092 0.929871916770936 0.999536712157815 hm5C_site_34599 DeepMRMD:0.929871916770936;iRNA_m5C:0.999536712157815 34600 chr16 31088167 31088167 1 + G A SKCM 31088177 + 31088157 31088197 41 GAGAAGGCTTGGCAAGCCACCCAGGTCCTGAGGATGGTGCA GAGAAGGCTTAGCAAGCCACCCAGGTCCTGAGGATGGTGCA < 41bp 1 0.265002232277188 1 0.421961426734924 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31088177 chr16:31088167 synonymous SNV . 0 11 hm5C_associated_SNPs_34841 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643900788 1 0.999536712198424 hm5C_site_34600 DeepMRMD:1;iRNA_m5C:0.999536712198424 34601 chr7 142460761 142460761 1 + G A SKCM 142460745 + 142460725 142460765 41 TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGT TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAAGAGT < 41bp 1 0.400294703886651 1 0.112795233726501 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460745 chr7:142460761 nonsynonymous SNV 0.020 5 37 hm5C_associated_SNPs_34842 0 0 0 0 0 Cytosol 1 0.500231643921099 1 0.999536712157801 hm5C_site_34601 DeepMRMD:1;iRNA_m5C:0.999536712157801 34602 chr7 142460761 142460761 1 + G A SKCM 142460757 + 142460737 142460777 41 GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG GTGGTCTGCAATGGACAGCTCCAAAGAGTTGTCTCCTGGGG < 41bp 1 0.394159024023717 1 0.436135977506638 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460757 chr7:142460761 nonsynonymous SNV 0.020 5 25 hm5C_associated_SNPs_34843 0 0 0 0 0 Cytosol 1 0.500231596949713 1 0.999536806100573 hm5C_site_34602 DeepMRMD:1;iRNA_m5C:0.999536806100573 34603 chr7 142460761 142460761 1 + G A SKCM 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTCTGCAATGGACAGCTCCAAAGAGTTGTCTCCTGGGGT < 41bp 1 0.230232342901619 1 0.254348874092102 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460761 nonsynonymous SNV 0.020 5 24 hm5C_associated_SNPs_34844 0 0 0 0 0 Cytosol 1 0.500231647886245 1 0.99953670422751 hm5C_site_34603 DeepMRMD:1;iRNA_m5C:0.99953670422751 34604 chr7 142460761 142460761 1 + G A SKCM 142460769 + 142460749 142460789 41 GGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC GGACAGCTCCAAAGAGTTGTCTCCTGGGGTGATGGCTGTGC < 41bp 1 0.534763642011307 1 0.545545697212219 experiment 0.930472715977386 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460769 chr7:142460761 nonsynonymous SNV 0.020 5 13 hm5C_associated_SNPs_34845 0 0 0 0 0 Cytosol 1 0.500231643921092 0.908908605575562 0.999536712157815 hm5C_site_34604 DeepMRMD:0.908908605575562;iRNA_m5C:0.999536712157815 34605 chr7 142460761 142460761 1 + G A SKCM 142460771 + 142460751 142460791 41 ACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC ACAGCTCCAAAGAGTTGTCTCCTGGGGTGATGGCTGTGCCC < 41bp 1 0.335752106863619 1 0.725490808486938 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460771 chr7:142460761 nonsynonymous SNV 0.020 5 11 hm5C_associated_SNPs_34846 0 0 0 0 0 Cytosol 1 0.500231643921092 0.549018383026124 0.999536712157815 hm5C_site_34605 DeepMRMD:0.549018383026124;iRNA_m5C:0.999536712157815 34606 chr20 42695394 42695394 1 + C T SKCM 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCTCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA < 41bp 1 0.441042217970223 1 0.0971888303756714 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695394 nonsynonymous SNV 0.931 0 4 hm5C_associated_SNPs_34848 0 0 0 0 1 exosome 1 0.500231642737346 1 0.999536714525307 hm5C_site_34606 DeepMRMD:1;iRNA_m5C:0.999536714525307 34607 chr14 64909104 64909104 1 + A T SKCM 64909115 + 64909095 64909135 41 TCAAGATGCACGGGGGCGGCCCCACGGTGAGTGGTGGGTTG TCAAGATGCTCGGGGGCGGCCCCACGGTGAGTGGTGGGTTG < 41bp 1 0.268590538067573 1 0.419808030128479 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64909115 chr14:64909104 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_34850 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_34607 DeepMRMD:1;iRNA_m5C:0.999536712157814 34608 chr14 64909105 64909105 1 + C T SKCM 64909115 + 64909095 64909135 41 TCAAGATGCACGGGGGCGGCCCCACGGTGAGTGGTGGGTTG TCAAGATGCATGGGGGCGGCCCCACGGTGAGTGGTGGGTTG < 41bp 1 0.246997027692094 1 0.301707625389099 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64909115 chr14:64909105 synonymous SNV . 0 11 hm5C_associated_SNPs_34851 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34608 DeepMRMD:1;iRNA_m5C:0.999536712157815 34609 chr11 61630767 61630767 1 + C T SKCM 61630766 + 61630746 61630786 41 TCTTGCAGGTTCCTGGAGAGCCACTGGTTTGTGTGGGTCAC TCTTGCAGGTTCCTGGAGAGCTACTGGTTTGTGTGGGTCAC < 41bp 1 0.454461494597985 1 0.25663024187088 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61630766 chr11:61630767 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_34852 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34609 DeepMRMD:1;iRNA_m5C:0.999536712157815 34610 chr7 44796724 44796724 1 + C T SKCM 44796719 + 44796699 44796739 41 GGCGTGTACAGCCGCGGGGGCTACCCTGGGGCCCCCGGCTT GGCGTGTACAGCCGCGGGGGCTACCTTGGGGCCCCCGGCTT < 41bp 1 0.357685457515628 1 0.119005918502808 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796719 chr7:44796724 nonsynonymous SNV 0.942 4 26 hm5C_associated_SNPs_34854 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34610 DeepMRMD:1;iRNA_m5C:0.999536712157815 34611 chr6 33169579 33169579 1 + C T SKCM 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCTCCGTGGA < 41bp 1 0.143371124441266 1 0.0619710981845856 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169579 nonsynonymous SNV 0.997 4 34 hm5C_associated_SNPs_34855 0 0 1 0 2 Ribosome 1 0.50023775867671 1 0.99952448264658 hm5C_site_34611 DeepMRMD:1;iRNA_m5C:0.99952448264658 34612 chr8 17055097 17055097 1 + G A SKCM 17055095 + 17055075 17055115 41 AGCTTTTTGTCCCTAGCCATCCGATACTGTGACAGATGCCA AGCTTTTTGTCCCTAGCCATCCAATACTGTGACAGATGCCA < 41bp 1 0.0984202865952563 1 0.12864950299263 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZDHHC2 ENSG00000104219 CDS Human protein_coding chr8:17055095 chr8:17055097 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_34856 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643919953 1 0.999536712160093 hm5C_site_34612 DeepMRMD:1;iRNA_m5C:0.999536712160093 34613 chr1 32626295 32626295 1 + C T SKCM 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCCTTAATCTTTTGTTAACGTGA < 41bp 1 0.147922571173178 1 0.474185347557068 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626295 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_34857 0 0 1 0 3 Cytosol 1 0.500231632164194 1 0.999536735671611 hm5C_site_34613 DeepMRMD:1;iRNA_m5C:0.999536735671611 34614 chr16 83992977 83992977 1 + C T SKCM 83992986 + 83992966 83993006 41 CTCACCGAGGCCCCGGGGGTCTCCATCCTGGACCAGGTGGG CTCACCGAGGCTCCGGGGGTCTCCATCCTGGACCAGGTGGG < 41bp 1 0.583269899646513 1 0.847439348697662 experiment 0.833460200706974 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83992986 chr16:83992977 synonymous SNV . 0 12 hm5C_associated_SNPs_34858 0 0 0 0 1 chromatin 1 0.500231643921092 0.305121302604676 0.999536712157815 hm5C_site_34614 DeepMRMD:0.305121302604676;iRNA_m5C:0.999536712157815 34615 chr8 38899581 38899581 1 + C T SKCM 38899577 + 38899557 38899597 41 CTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG CTGATGAAGCCTATAGTGCTCCCTTCTGTGGTAATAAGTTG < 41bp 1 0.126521041335209 1 0.0460838973522186 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899577 chr8:38899581 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_34861 0 0 1 0 1 Ribosome 1 0.50023164372129 1 0.99953671255742 hm5C_site_34615 DeepMRMD:1;iRNA_m5C:0.99953671255742 34616 chr19 52195888 52195888 1 + T C SKCM 52195882 + 52195862 52195902 41 CCTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGC CCTGGCACCCACCCGTAGAACCGACCCTGCGGGGCCTTCGC < 41bp 1 0.244890899631485 1 0.0906893610954285 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195882 chr19:52195888 . . 0 27 hm5C_associated_SNPs_34862 0 0 1 0 0 unknown 1 0.500231643904313 1 0.999536712191374 hm5C_site_34616 DeepMRMD:1;iRNA_m5C:0.999536712191374 34617 chr19 52195888 52195888 1 + T C SKCM 52195883 + 52195863 52195903 41 CTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCC CTGGCACCCACCCGTAGAACCGACCCTGCGGGGCCTTCGCC < 41bp 1 0.379518696166496 1 0.18307700753212 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195883 chr19:52195888 . . 0 26 hm5C_associated_SNPs_34863 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_34617 DeepMRMD:1;iRNA_m5C:0.999536712157815 34618 chr19 52195888 52195888 1 + T C SKCM 52195886 + 52195866 52195906 41 GCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCA GCACCCACCCGTAGAACCGACCCTGCGGGGCCTTCGCCGCA < 41bp 1 0.216655224205687 1 0.0245927572250366 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195886 chr19:52195888 . . 0 23 hm5C_associated_SNPs_34864 0 0 1 0 0 unknown 1 0.500231643923514 1 0.999536712152972 hm5C_site_34618 DeepMRMD:1;iRNA_m5C:0.999536712152972 34619 chr19 52195888 52195888 1 + T C SKCM 52195887 + 52195867 52195907 41 CACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCAC CACCCACCCGTAGAACCGACCCTGCGGGGCCTTCGCCGCAC < 41bp 1 0.208546663770746 1 0.308486521244049 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195887 chr19:52195888 . . 0 22 hm5C_associated_SNPs_34865 0 0 1 0 0 unknown 1 0.500231643921088 1 0.999536712157824 hm5C_site_34619 DeepMRMD:1;iRNA_m5C:0.999536712157824 34620 chr22 29445766 29445766 1 + C T SKCM 29445774 + 29445754 29445794 41 TTCAGCTGCTATCACGGCCACCGCTCGGTGTGCAGTGGCTA TTCAGCTGCTATTACGGCCACCGCTCGGTGTGCAGTGGCTA < 41bp 1 0.0894245001043624 1 0.0580606162548065 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29445774 chr22:29445766 nonsynonymous SNV 0.996 4 13 hm5C_associated_SNPs_34866 0 0 1 0 0 Ribosome 1 0.500258544176323 1 0.999482911647354 hm5C_site_34620 DeepMRMD:1;iRNA_m5C:0.999482911647354 34621 chr12 57919750 57919750 1 + C T SKCM 57919754 + 57919734 57919774 41 CCAAGGCACAGCATCCCCCACTACCCCCTCCCAGCACTTTA CCAAGGCACAGCATCCTCCACTACCCCCTCCCAGCACTTTA < 41bp 1 0.138339245554452 1 0.0638592839241028 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919754 chr12:57919750 synonymous SNV . 0 17 hm5C_associated_SNPs_34867 0 0 1 0 0 chromatin 1 0.500231647940481 1 0.999536704119038 hm5C_site_34621 DeepMRMD:1;iRNA_m5C:0.999536704119038 34622 chr11 71502807 71502807 1 + T G SKCM 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGGGAAGCACCCGCCGTCAGTCAAGTAT < 41bp 1 0.21290056775616 1 0.439842760562897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502807 nonsynonymous SNV 0.957 0 16 hm5C_associated_SNPs_34868 0 0 0 1 3 Ribosome 1 0.500239464152839 1 0.999521071694322 hm5C_site_34622 DeepMRMD:1;iRNA_m5C:0.999521071694322 34623 chr19 39215191 39215191 1 + C T SKCM 39215182 + 39215162 39215202 41 GCCAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATG GCCAGGCCAATGTTGTGGGGCCCTGGATCTAGACCAAGATG < 41bp 1 0.0908451953576322 1 0.0329121947288513 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215182 chr19:39215191 stopgain 1.000 1 30 hm5C_associated_SNPs_34869 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34623 DeepMRMD:1;iRNA_m5C:0.999536712157815 34624 chr19 39215191 39215191 1 + C T SKCM 39215184 + 39215164 39215204 41 CAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATGGA CAGGCCAATGTTGTGGGGCCCTGGATCTAGACCAAGATGGA < 41bp 1 0.697657418125216 1 0.610700011253357 experiment 0.604685163749568 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215184 chr19:39215191 stopgain 1.000 1 28 hm5C_associated_SNPs_34870 0 0 1 0 1 Nucleus 1 0.500231643921092 0.778599977493286 0.999536712157816 hm5C_site_34624 DeepMRMD:0.778599977493286;iRNA_m5C:0.999536712157816 34625 chr19 39215191 39215191 1 + C T SKCM 39215195 + 39215175 39215215 41 TGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGGCACG TGTGGGGCCCTGGATCTAGACCAAGATGGAGGTGAGGCACG < 41bp 1 0.335699555554688 1 0.312009483575821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215195 chr19:39215191 stopgain 1.000 1 17 hm5C_associated_SNPs_34871 0 0 1 0 1 Nucleus 1 0.500229971758334 1 0.999540056483333 hm5C_site_34625 DeepMRMD:1;iRNA_m5C:0.999540056483333 34626 chr12 57167947 57167947 1 + G A SKCM 57167934 + 57167914 57167954 41 CTACTCAGTGGGTGAAGGAGCATGTGGGGGACAGAGGTATG CTACTCAGTGGGTGAAGGAGCATGTGGGGGACAAAGGTATG < 41bp 1 0.477499761627212 1 0.354485869407654 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57167934 chr12:57167947 nonsynonymous SNV 0.993 1 34 hm5C_associated_SNPs_34872 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34626 DeepMRMD:1;iRNA_m5C:0.999536712157815 34627 chr5 176016583 176016583 1 + G A SKCM 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTCTCCACACCGAAGAAGGAGGTGGGCGCCA < 41bp 1 0.472512813578464 1 0.772830963134766 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016583 nonsynonymous SNV 0.111 0 26 hm5C_associated_SNPs_34873 0 0 0 0 2 Exosome 1 0.500231643921092 0.454338073730468 0.999536712157815 hm5C_site_34627 DeepMRMD:0.454338073730468;iRNA_m5C:0.999536712157815 34628 chr15 85164130 85164130 1 + C T SKCM 85164140 + 85164120 85164160 41 AGCCGGAAATCCCACCTCATCACACACGAGAGGACCCACAC AGCCGGAAATTCCACCTCATCACACACGAGAGGACCCACAC < 41bp 1 0.456646522909111 1 0.45521479845047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSCAN2 ENSG00000176371 CDS Human protein_coding chr15:85164140 chr15:85164130 nonsynonymous SNV 0.987 4 11 hm5C_associated_SNPs_34874 0 0 1 0 0 Nucleus 1 0.500231643781751 1 0.999536712436498 hm5C_site_34628 DeepMRMD:1;iRNA_m5C:0.999536712436498 34629 chr13 93879766 93879766 1 + C A SKCM 93879771 + 93879751 93879791 41 GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTC GCTGCTGCTCTCCCTACCCGCCGGGGCGGATGTGAAGGCTC < 41bp 1 0.597284835530068 1 0.856162905693054 experiment 0.805430328939864 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879771 chr13:93879766 synonymous SNV . 0 16 hm5C_associated_SNPs_34877 0 0 1 0 0 Ribosome 1 0.500231643921143 0.287674188613892 0.999536712157714 hm5C_site_34629 DeepMRMD:0.287674188613892;iRNA_m5C:0.999536712157714 34630 chr18 9257470 9257470 1 + C T SKCM 9257488 + 9257468 9257508 41 TCCAGTGCATTTAGAGCCATCTAGTCAGGTTGGTGTGATCC TCTAGTGCATTTAGAGCCATCTAGTCAGGTTGGTGTGATCC < 41bp 1 0.305680509532499 1 0.245185911655426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD12 ENSG00000101745 CDS Human protein_coding chr18:9257488 chr18:9257470 nonsynonymous SNV 0.794 1 3 hm5C_associated_SNPs_34878 0 0 1 0 0 Cytosol 1 0.500231645624203 1 0.999536708751594 hm5C_site_34630 DeepMRMD:1;iRNA_m5C:0.999536708751594 34631 chr7 128486888 128486888 1 + C T SKCM 128486898 + 128486878 128486918 41 GGTAGCTGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA GGTAGCTGCATCGTGGAGTACATCCCCTTCACTCCTGGAGA < 41bp 1 0.0438780748770244 1 0.0641769766807556 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486898 chr7:128486888 nonsynonymous SNV 0.984 3 11 hm5C_associated_SNPs_34879 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_34631 DeepMRMD:1;iRNA_m5C:0.999536712157815 34632 chr17 75210098 75210098 1 + C T SKCM 75210096 + 75210076 75210116 41 TCCCACTCCAGCTCCATGATCTCCAGGTAGTGCCGCGCTGC TCCCACTCCAGCTCCATGATCTTCAGGTAGTGCCGCGCTGC < 41bp 1 0.697782417635746 1 0.217097759246826 experiment 0.604435164728507 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75210096 chr17:75210098 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_34880 0 0 1 0 2 Cytosol 1 0.500231653774326 1 0.999536692451347 hm5C_site_34632 DeepMRMD:1;iRNA_m5C:0.999536692451347 34633 chr9 137708893 137708893 1 + G A SKCM 137708906 + 137708886 137708926 41 TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG TACTGGTAAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG < 41bp 1 0.307088999355057 1 0.831288874149323 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137708906 chr9:137708893 nonsynonymous SNV 0.561 3 8 hm5C_associated_SNPs_34881 0 0 0 0 1 Nucleus 1 0.500231643921092 0.337422251701354 0.999536712157815 hm5C_site_34633 DeepMRMD:0.337422251701354;iRNA_m5C:0.999536712157815 34634 chr13 113485772 113485772 1 + C T SKCM 113485767 + 113485747 113485787 41 AGGAGTGCTGCATCGAAGGCCATGTCTACGTGCCCCACGTC AGGAGTGCTGCATCGAAGGCCATGTTTACGTGCCCCACGTC < 41bp 1 0.1907119702578 1 0.405615925788879 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113485767 chr13:113485772 synonymous SNV . 0 26 hm5C_associated_SNPs_34882 0 0 0 0 1 Endoplasmic reticulum 1 0.500236645339836 1 0.999526709320329 hm5C_site_34634 DeepMRMD:1;iRNA_m5C:0.999526709320329 34635 chr3 170078455 170078455 1 + C T SKCM 170078471 + 170078451 170078491 41 ATTCCCAAGAAAGCATGTCGCCTACTGTATTTCTGCCTCTT ATTCTCAAGAAAGCATGTCGCCTACTGTATTTCTGCCTCTT < 41bp 1 0.124011026624595 1 0.0364512205123901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170078471 chr3:170078455 synonymous SNV . 0 5 hm5C_associated_SNPs_34883 0 0 1 0 0 Nucleus 1 0.500231643881216 1 0.999536712237569 hm5C_site_34635 DeepMRMD:1;iRNA_m5C:0.999536712237569 34636 chr2 136396198 136396198 1 + C T SKCM 136396190 + 136396170 136396210 41 ATCTATTCTTTTTTCTAGTCCCTGTGTTCCCAAGAGAATTA ATCTATTCTTTTTTCTAGTCCCTGTGTTTCCAAGAGAATTA < 41bp 1 0.0249041855861097 1 0.0485671162605286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136396190 chr2:136396198 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_34884 0 0 1 0 2 Cytosol 1 0.500231648468092 1 0.999536703063816 hm5C_site_34636 DeepMRMD:1;iRNA_m5C:0.999536703063816 34637 chr1 12317070 12317070 1 + C T SKCM 12317053 + 12317033 12317073 41 CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTCCTC CTAATACAAAGCTGCAATACCGGCAAATCATGGAATTTCTC < 41bp 1 0.224164620003394 1 0.440597683191299 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12317053 chr1:12317070 synonymous SNV . 0 38 hm5C_associated_SNPs_34885 0 0 1 0 2 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_34637 DeepMRMD:1;iRNA_m5C:0.999536712157818 34638 chr2 182766562 182766562 1 + C T SKCM 182766571 + 182766551 182766591 41 TTCTCAAGTCTCCGGGACGCCCCTGCAGAGAATTGGAAGTA TTCTCAAGTCTTCGGGACGCCCCTGCAGAGAATTGGAAGTA < 41bp 1 0.212480206720777 1 0.0540726482868195 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182766571 chr2:182766562 nonsynonymous SNV 0.995 4 12 hm5C_associated_SNPs_34886 0 0 1 0 1 Ribosome 1 0.500231637661157 1 0.999536724677685 hm5C_site_34638 DeepMRMD:1;iRNA_m5C:0.999536724677685 34639 chr2 71577112 71577112 1 + C T SKCM 71577126 + 71577106 71577146 41 TAATTTCATCTGTAAGCCAGCAAGAGCGGATCCCACATGAA TAATTTTATCTGTAAGCCAGCAAGAGCGGATCCCACATGAA < 41bp 1 0.496473385646434 1 0.717303156852722 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71577126 chr2:71577112 nonsynonymous SNV 0.519 1 7 hm5C_associated_SNPs_34887 0 0 1 0 0 Nucleus 1 0.500231643921096 0.565393686294556 0.999536712157808 hm5C_site_34639 DeepMRMD:0.565393686294556;iRNA_m5C:0.999536712157808 34640 chr15 41192218 41192218 1 + C T SKCM 41192201 + 41192181 41192221 41 TACCACGTGCAACGGGAGGCCCGAGATGTCTGGCGCACCTA TACCACGTGCAACGGGAGGCCCGAGATGTCTGGCGCATCTA < 41bp 1 0.302760347119261 1 0.424657464027405 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192201 chr15:41192218 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_34888 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_34640 DeepMRMD:1;iRNA_m5C:0.999536712157815 34641 chr1 17949637 17949637 1 + C T SKCM 17949656 + 17949636 17949676 41 CCACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGGTAAGT CTACCGAGAAGATCGGGGACCTCTTCGTGGCCTCGGTAAGT < 41bp 1 0.117692075361068 1 0.0309090614318848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17949656 chr1:17949637 synonymous SNV . 0 2 hm5C_associated_SNPs_34890 0 0 1 0 1 Nucleus 1 0.500231652257702 1 0.999536695484595 hm5C_site_34641 DeepMRMD:1;iRNA_m5C:0.999536695484595 34642 chr19 6177320 6177320 1 + C T SKCM 6177336 + 6177316 6177356 41 CACTCAGCCATATTGCAGCACAGATGATGGACATCTGGGTA CACTTAGCCATATTGCAGCACAGATGATGGACATCTGGGTA < 41bp 1 0.395660755166329 1 0.0933663249015808 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6177336 chr19:6177320 synonymous SNV . 0 5 hm5C_associated_SNPs_34891 0 0 0 0 2 exosome 1 0.500231722112877 1 0.999536555774246 hm5C_site_34642 DeepMRMD:1;iRNA_m5C:0.999536555774246 34643 chr22 51044074 51044074 1 + C T SKCM 51044075 + 51044055 51044095 41 AGGAGGACGACTTCTGGTTCCGTGGCTTCAACATGCGCACG AGGAGGACGACTTCTGGTTTCGTGGCTTCAACATGCGCACG < 41bp 1 0.460588419576244 1 0.611353099346161 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044075 chr22:51044074 synonymous SNV . 0 20 hm5C_associated_SNPs_34892 0 0 0 0 2 exosome 1 0.500231643046092 0.777293801307678 0.999536713907816 hm5C_site_34643 DeepMRMD:0.777293801307678;iRNA_m5C:0.999536713907816 34644 chr11 130005579 130005579 1 + C T SKCM 130005561 + 130005541 130005581 41 TCTGAGGAGAGTGAGGAGATCCCACCGTTCCACCCCTTCCA TCTGAGGAGAGTGAGGAGATCCCACCGTTCCACCCCTTTCA < 41bp 1 0.251470553286877 1 0.103022843599319 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130005561 chr11:130005579 synonymous SNV . 0 39 hm5C_associated_SNPs_34893 0 0 1 0 1 Endoplasmic reticulum 1 0.500231646331614 1 0.999536707336772 hm5C_site_34644 DeepMRMD:1;iRNA_m5C:0.999536707336772 34645 chr11 118403846 118403846 1 + C T SKCM 118403838 + 118403818 118403858 41 TCACCAACCACACGGTGCAGCTGCAGCTCCGCAGCCTGGCA TCACCAACCACACGGTGCAGCTGCAGCTTCGCAGCCTGGCA < 41bp 1 0.695209955200932 1 0.723609566688538 experiment 0.609580089598135 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118403838 chr11:118403846 synonymous SNV . 0 29 hm5C_associated_SNPs_34894 0 0 0 0 1 Nucleus 1 0.500210325215312 0.552780866622924 0.999579349569375 hm5C_site_34645 DeepMRMD:0.552780866622924;iRNA_m5C:0.999579349569375 34646 chr15 41192217 41192217 1 + A T SKCM 41192201 + 41192181 41192221 41 TACCACGTGCAACGGGAGGCCCGAGATGTCTGGCGCACCTA TACCACGTGCAACGGGAGGCCCGAGATGTCTGGCGCTCCTA < 41bp 1 0.329471430820249 1 0.455880165100098 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192201 chr15:41192217 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_34895 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_34646 DeepMRMD:1;iRNA_m5C:0.999536712157815 34647 chr3 111685471 111685471 1 + C T SKCM 111685463 + 111685443 111685483 41 TTTGGTGTTTCATTCAGTGCCAGCACTTCAAATATTGCTAG TTTGGTGTTTCATTCAGTGCCAGCACTTTAAATATTGCTAG < 41bp 1 0.484173698588799 1 0.271250069141388 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111685463 chr3:111685471 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_34897 0 0 0 0 1 cytosol 1 0.500231372877507 1 0.999537254244985 hm5C_site_34647 DeepMRMD:1;iRNA_m5C:0.999537254244985 34648 chr5 149006709 149006709 1 + A T SKCM 149006692 + 149006672 149006712 41 GCTCTCCTGAGCAGGTATGGCCCTGGGAAGCTGTACCAGGT GCTCTCCTGAGCAGGTATGGCCCTGGGAAGCTGTACCTGGT < 41bp 1 0.206187575336069 1 0.434415400028229 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149006692 chr5:149006709 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_34898 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34648 DeepMRMD:1;iRNA_m5C:0.999536712157815 34649 chrX 105855852 105855852 1 + T A SKCM 105855849 + 105855829 105855869 41 CCAGGAGAAACCAGAGAGGCCTTTAAGAGGCGGGAAGAGTC CCAGGAGAAACCAGAGAGGCCTTAAAGAGGCGGGAAGAGTC < 41bp 1 0.356075139892047 1 0.25199955701828 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105855849 chrX:105855852 stopgain 1.000 1 24 hm5C_associated_SNPs_34900 0 0 0 0 0 nucleus 1 0.500231643930966 1 0.999536712138068 hm5C_site_34649 DeepMRMD:1;iRNA_m5C:0.999536712138068 34650 chr7 44741211 44741211 1 + C T SKCM 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTT < 41bp 1 0.177675950536711 1 0.59520560503006 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741211 nonsynonymous SNV 0.945 0 41 hm5C_associated_SNPs_34901 0 0 1 0 2 Nucleus 1 0.500231634127035 0.80958878993988 0.99953673174593 hm5C_site_34650 DeepMRMD:0.80958878993988;iRNA_m5C:0.99953673174593 34651 chr4 76711331 76711331 1 + G A SKCM 76711339 + 76711319 76711359 41 CAGAAGTTATTCGAGGCTGCCAAGTAAACCAAGACTACTTT CAGAAGTTATTCAAGGCTGCCAAGTAAACCAAGACTACTTT < 41bp 1 0.355909928700145 1 0.285944908857346 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76711339 chr4:76711331 nonsynonymous SNV 0.997 3 13 hm5C_associated_SNPs_34902 0 0 1 0 2 Nucleus 1 0.499745428498266 1 1 hm5C_site_34651 DeepMRMD:1;iRNA_m5C:1 34652 chr2 42886981 42886981 1 + A G SKCM 42886977 + 42886957 42886997 41 TAGTTTGCATATGAGTGCTGCTGCAGCTTCCCGAGACATCA TAGTTTGCATATGAGTGCTGCTGCGGCTTCCCGAGACATCA < 41bp 1 0.196402211917399 1 0.204963505268097 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTA3 ENSG00000057935 CDS Human protein_coding chr2:42886977 chr2:42886981 synonymous SNV . 0 25 hm5C_associated_SNPs_34903 0 0 1 0 2 Cytosol 1 0.500231656327189 1 0.999536687345621 hm5C_site_34652 DeepMRMD:1;iRNA_m5C:0.999536687345621 34653 chr17 54912436 54912436 1 + G A SKCM 54912447 + 54912427 54912467 41 GGGCTCCGCGTGGACGAGGGCTGCCTCAGGAAGGCCGACAA GGGCTCCGCATGGACGAGGGCTGCCTCAGGAAGGCCGACAA < 41bp 1 0.597809138767911 1 0.0836111903190613 experiment 0.804381722464178 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54912447 chr17:54912436 nonsynonymous SNV 0.998 5 10 hm5C_associated_SNPs_34904 0 0 1 0 0 Ribosome 1 0.500231643612534 1 0.999536712774932 hm5C_site_34653 DeepMRMD:1;iRNA_m5C:0.999536712774932 34654 chr8 133855033 133855033 1 + T C SKCM 133855017 + 133854997 133855037 41 TCTCGCAGACCCTGGGAGCTCAGATGATGATGATGTTAGTA TCTCGCAGACCCTGGGAGCTCAGATGATGATGATGTCAGTA < 41bp 1 0.585764083923084 1 0.553044378757477 experiment 0.828471832153832 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133855017 chr8:133855033 synonymous SNV . 0 37 hm5C_associated_SNPs_34905 0 0 1 0 1 Nucleus 1 0.500231662466199 0.893911242485046 0.999536675067602 hm5C_site_34654 DeepMRMD:0.893911242485046;iRNA_m5C:0.999536675067602 34655 chr16 1398406 1398406 1 + G A SKCM 1398411 + 1398391 1398431 41 CTGAGGAGGCTGGAAGGCCGCACCAGCAAGGAGGCGCAGGA CTGAGGAGGCTGGAAAGCCGCACCAGCAAGGAGGCGCAGGA < 41bp 1 0.680806961939775 1 0.318577468395233 experiment 0.638386076120451 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1398411 chr16:1398406 nonsynonymous SNV 0.733 2 16 hm5C_associated_SNPs_34906 0 0 0 0 1 chromatin 1 0.500231593375658 1 0.999536813248684 hm5C_site_34655 DeepMRMD:1;iRNA_m5C:0.999536813248684 34656 chr19 10941706 10941706 1 + C T SKCM 10941686 + 10941666 10941706 41 TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGC TGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGT < 41bp 1 0.048202950800998 1 0.0773702263832092 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941686 chr19:10941706 nonsynonymous SNV 0.996 1 41 hm5C_associated_SNPs_34907 0 0 1 0 2 Nucleus 1 0.500231643921181 1 0.999536712157639 hm5C_site_34656 DeepMRMD:1;iRNA_m5C:0.999536712157639 34657 chr19 10941706 10941706 1 + C T SKCM 10941687 + 10941667 10941707 41 GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCC GCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGTC < 41bp 1 0.261595524678367 1 0.0709146559238434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10941687 chr19:10941706 nonsynonymous SNV 0.996 1 40 hm5C_associated_SNPs_34908 0 0 1 0 2 Nucleus 1 0.500231647412537 1 0.999536705174926 hm5C_site_34657 DeepMRMD:1;iRNA_m5C:0.999536705174926 34658 chr4 79396728 79396728 1 + G A SKCM 79396708 + 79396688 79396728 41 AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCTG AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCTA < 41bp 1 0.371958466256219 1 0.930526733398438 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79396708 chr4:79396728 nonsynonymous SNV 0.985 3 41 hm5C_associated_SNPs_34909 0 0 0 0 1 Nucleus 1 0.500231643921084 0.138946533203124 0.999536712157831 hm5C_site_34658 DeepMRMD:0.138946533203124;iRNA_m5C:0.999536712157831 34659 chr11 67376978 67376978 1 + C T SKCM 67376960 + 67376940 67376980 41 TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACTGG < 41bp 1 0.436945492100893 1 0.729698717594147 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376960 chr11:67376978 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_34910 0 0 1 0 1 Ribosome 1 0.500231643921092 0.540602564811706 0.999536712157815 hm5C_site_34659 DeepMRMD:0.540602564811706;iRNA_m5C:0.999536712157815 34660 chr20 30753170 30753170 1 + C T SKCM 30753183 + 30753163 30753203 41 CTTCTGGCTGCTAACGGGTACCATCGGCTTCTATGCAGCCT CTTCTGGTTGCTAACGGGTACCATCGGCTTCTATGCAGCCT < 41bp 1 0.0450069099004003 1 0.149414449930191 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30753183 chr20:30753170 synonymous SNV . 0 8 hm5C_associated_SNPs_34911 0 0 1 0 1 Nucleus 1 0.500231643920409 1 0.999536712159183 hm5C_site_34660 DeepMRMD:1;iRNA_m5C:0.999536712159183 34661 chr20 42680142 42680142 1 + C T SKCM 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCT < 41bp 1 0.408216099553447 1 0.155723750591278 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680142 nonsynonymous SNV 0.767 4 41 hm5C_associated_SNPs_34912 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34661 DeepMRMD:1;iRNA_m5C:0.999536712157815 34662 chr7 91735013 91735013 1 + G A SKCM 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTTTTGGTTCGACGATGGCATCGAGTCACAGGTTCTGTT < 41bp 1 0.142934764156801 1 0.144134610891342 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735013 synonymous SNV . 0 17 hm5C_associated_SNPs_34913 0 0 1 0 2 Nucleus 1 0.500231643921656 1 0.999536712156687 hm5C_site_34662 DeepMRMD:1;iRNA_m5C:0.999536712156687 34663 chr4 76711342 76711342 1 + G A SKCM 76711339 + 76711319 76711359 41 CAGAAGTTATTCGAGGCTGCCAAGTAAACCAAGACTACTTT CAGAAGTTATTCGAGGCTGCCAAATAAACCAAGACTACTTT < 41bp 1 0.230660916460121 1 0.463884383440018 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76711339 chr4:76711342 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_34914 0 0 1 0 2 Nucleus 1 0.500230679311713 1 0.999538641376575 hm5C_site_34663 DeepMRMD:1;iRNA_m5C:0.999538641376575 34664 chr15 81214439 81214439 1 + G A SKCM 81214448 + 81214428 81214468 41 CACATTCCACTGGGAAAATTCTATAACAACCGAGCACATTC CACATTCCACTAGGAAAATTCTATAACAACCGAGCACATTC < 41bp 1 0.299713209549033 1 0.244575679302216 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81214448 chr15:81214439 synonymous SNV . 0 12 hm5C_associated_SNPs_34915 0 0 0 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_34664 DeepMRMD:1;iRNA_m5C:0.999536712157815 34665 chr21 47831458 47831458 1 + T A SKCM 47831443 + 47831423 47831463 41 GCACAGCCAGGCCCTGGAGGCCCTGCAGCAGCGCCTCCAGG GCACAGCCAGGCCCTGGAGGCCCTGCAGCAGCGCCACCAGG < 41bp 1 0.0651245655945239 1 0.0525454580783844 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831443 chr21:47831458 nonsynonymous SNV 0.142 3 36 hm5C_associated_SNPs_34918 0 0 0 0 0 Exosome 1 0.500231646811847 1 0.999536706376307 hm5C_site_34665 DeepMRMD:1;iRNA_m5C:0.999536706376307 34666 chr21 47831458 47831458 1 + T A SKCM 47831456 + 47831436 47831476 41 CTGGAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGC CTGGAGGCCCTGCAGCAGCGCCACCAGGGCGCAGAGGAGGC < 41bp 1 0.0306512926031718 1 0.131454139947891 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831456 chr21:47831458 nonsynonymous SNV 0.142 3 23 hm5C_associated_SNPs_34919 0 0 0 0 0 Exosome 1 0.500231643940242 1 0.999536712119516 hm5C_site_34666 DeepMRMD:1;iRNA_m5C:0.999536712119516 34667 chr21 47831458 47831458 1 + T A SKCM 47831457 + 47831437 47831477 41 TGGAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCT TGGAGGCCCTGCAGCAGCGCCACCAGGGCGCAGAGGAGGCT < 41bp 1 0.292596630125629 1 0.22077801823616 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831457 chr21:47831458 nonsynonymous SNV 0.142 3 22 hm5C_associated_SNPs_34920 0 0 0 0 0 Exosome 1 0.500231643746611 1 0.999536712506778 hm5C_site_34667 DeepMRMD:1;iRNA_m5C:0.999536712506778 34668 chr21 47831458 47831458 1 + T A SKCM 47831459 + 47831439 47831479 41 GAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGC GAGGCCCTGCAGCAGCGCCACCAGGGCGCAGAGGAGGCTGC < 41bp 1 0.184298803253677 1 0.223554342985153 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831459 chr21:47831458 nonsynonymous SNV 0.142 3 20 hm5C_associated_SNPs_34921 0 0 0 0 0 Exosome 1 0.500231643896173 1 0.999536712207653 hm5C_site_34668 DeepMRMD:1;iRNA_m5C:0.999536712207653 34669 chr21 47831458 47831458 1 + T A SKCM 47831460 + 47831440 47831480 41 AGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCG AGGCCCTGCAGCAGCGCCACCAGGGCGCAGAGGAGGCTGCG < 41bp 1 0.450500243755083 1 0.881864666938782 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831460 chr21:47831458 nonsynonymous SNV 0.142 3 19 hm5C_associated_SNPs_34922 0 0 0 0 0 Exosome 1 0.500231643904392 0.236270666122436 0.999536712191216 hm5C_site_34669 DeepMRMD:0.236270666122436;iRNA_m5C:0.999536712191216 34670 chr21 47831458 47831458 1 + T A SKCM 47831465 + 47831445 47831485 41 CTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCGGAGCT CTGCAGCAGCGCCACCAGGGCGCAGAGGAGGCTGCGGAGCT < 41bp 1 0.261688362481073 1 0.559607207775116 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831465 chr21:47831458 nonsynonymous SNV 0.142 3 14 hm5C_associated_SNPs_34923 0 0 0 0 0 Exosome 1 0.500231643921394 0.880785584449768 0.999536712157212 hm5C_site_34670 DeepMRMD:0.880785584449768;iRNA_m5C:0.999536712157212 34671 chr19 14674799 14674799 1 + C T SKCM 14674819 + 14674799 14674839 41 CCTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCT TCTAACAGAGTACGCGGGGCCCCTTTTCATCTACCTGCTCT < 41bp 1 0.13198151015112 1 0.0497346222400665 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TECR ENSG00000099797 CDS Human protein_coding chr19:14674819 chr19:14674799 nonsynonymous SNV . 0 1 hm5C_associated_SNPs_34924 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34671 DeepMRMD:1;iRNA_m5C:0.999536712157815 34672 chrX 48369807 48369807 1 + C T SKCM 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GCTGTTTCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC < 41bp 1 0.0750325726349174 1 0.0501386225223541 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369807 nonsynonymous SNV . 0 7 hm5C_associated_SNPs_34925 0 0 1 0 2 nucleolus 1 0.500231643921093 1 0.999536712157814 hm5C_site_34672 DeepMRMD:1;iRNA_m5C:0.999536712157814 34673 chr1 57157076 57157076 1 + G A SKCM 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTAATCAGCACTCCAACAGATTTTTTTAT < 41bp 1 0.0488095043315406 1 0.25661963224411 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157076 synonymous SNV . 0 15 hm5C_associated_SNPs_34926 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921175 1 0.99953671215765 hm5C_site_34673 DeepMRMD:1;iRNA_m5C:0.99953671215765 34674 chr13 41650183 41650183 1 + C T SKCM 41650198 + 41650178 41650218 41 AGAATCCAGATGGGAGAAACCTGATGATTTCATTCCACACA AGAATTCAGATGGGAGAAACCTGATGATTTCATTCCACACA < 41bp 1 0.664407506937874 1 0.121343016624451 experiment 0.671184986124251 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WBP4 ENSG00000120688 CDS Human protein_coding chr13:41650198 chr13:41650183 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_34927 0 0 0 0 1 Cytosol 1 0.50023559759598 1 0.99952880480804 hm5C_site_34674 DeepMRMD:1;iRNA_m5C:0.99952880480804 34675 chrX 69639608 69639608 1 + C T SKCM 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGGATTGAGCTTCTTTAATCTCGTCTGTGCCACCCCCAAT < 41bp 1 0.661113812970781 1 0.239813387393951 experiment 0.677772374058438 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639608 nonsynonymous SNV 0.870 2 22 hm5C_associated_SNPs_34928 0 0 1 0 2 chromatin 1 0.500231630236326 1 0.999536739527348 hm5C_site_34675 DeepMRMD:1;iRNA_m5C:0.999536739527348 34676 chr19 14562765 14562765 1 + C T SKCM 14562777 + 14562757 14562797 41 CGCCCAGCCCGGGGCCTTTACAGCCGAAGCGGAAGCCTCAG CGCCCAGCTCGGGGCCTTTACAGCCGAAGCGGAAGCCTCAG < 41bp 1 0.589758242376012 1 0.808225870132446 experiment 0.820483515247975 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562777 chr19:14562765 synonymous SNV . 0 9 hm5C_associated_SNPs_34929 0 0 1 0 1 Ribosome 1 0.500231643921092 0.383548259735108 0.999536712157815 hm5C_site_34676 DeepMRMD:0.383548259735108;iRNA_m5C:0.999536712157815 34677 chr5 142264914 142264914 1 + G A SKCM 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTATTGTGGCATCTTAAAAAAACACTTGAATTT < 41bp 1 0.172885068694565 1 0.366065621376038 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264914 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_34930 0 0 1 0 2 Nucleus 1 0.500231644433026 1 0.999536711133947 hm5C_site_34677 DeepMRMD:1;iRNA_m5C:0.999536711133947 34678 chr15 42137229 42137229 1 + C A SKCM 42137230 + 42137210 42137250 41 ACCCAAGCTGCTTCACCAACCTGTGGGCCCTCATCAACGAG ACCCAAGCTGCTTCACCAAACTGTGGGCCCTCATCAACGAG < 41bp 1 0.531846673528296 1 0.434273242950439 experiment 0.936306652943407 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42137230 chr15:42137229 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_34931 0 0 0 0 1 unknown 1 0.500231648326559 1 0.999536703346882 hm5C_site_34678 DeepMRMD:1;iRNA_m5C:0.999536703346882 34679 chr21 42629149 42629149 1 + C T SKCM 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCTATCCACAAATGCGCTGGTGATCGGTGCCACGGTG < 41bp 1 0.518418254231845 1 0.183394521474838 experiment 0.963163491536311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629149 nonsynonymous SNV 0.855 0 7 hm5C_associated_SNPs_34932 0 0 1 0 1 Ribosome 1 0.500231643850945 1 0.99953671229811 hm5C_site_34679 DeepMRMD:1;iRNA_m5C:0.99953671229811 34680 chr19 14562766 14562766 1 + C T SKCM 14562777 + 14562757 14562797 41 CGCCCAGCCCGGGGCCTTTACAGCCGAAGCGGAAGCCTCAG CGCCCAGCCTGGGGCCTTTACAGCCGAAGCGGAAGCCTCAG < 41bp 1 0.581065979352004 1 0.773245453834534 experiment 0.837868041295991 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562777 chr19:14562766 nonsynonymous SNV 0.952 3 10 hm5C_associated_SNPs_34933 0 0 1 0 1 Ribosome 1 0.500231643921092 0.453509092330932 0.999536712157815 hm5C_site_34680 DeepMRMD:0.453509092330932;iRNA_m5C:0.999536712157815 34681 chr6 149691194 149691194 1 + C T SKCM 149691182 + 149691162 149691202 41 TTCAGGTTTTACATGACCTGCGACAAAAATTCCCTGAAGTA TTCAGGTTTTACATGACCTGCGACAAAAATTCTCTGAAGTA < 41bp 1 0.510538009842296 1 0.222627967596054 experiment 0.978923980315407 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAB2 ENSG00000055208 CDS Human protein_coding chr6:149691182 chr6:149691194 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_34934 0 0 1 0 1 Cytosol 1 0.500231643955541 1 0.999536712088917 hm5C_site_34681 DeepMRMD:1;iRNA_m5C:0.999536712088917 34682 chr5 90083966 90083966 1 + G A SKCM 90083965 + 90083945 90083985 41 GACATTGCAGACCCAGTGAGCGGGTTGTTCTATTTTGGAGA GACATTGCAGACCCAGTGAGCAGGTTGTTCTATTTTGGAGA < 41bp 1 0.1576536139803 1 0.763437271118164 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ADGRV1 ENSG00000164199 CDS Human protein_coding chr5:90083965 chr5:90083966 nonsynonymous SNV 0.104 4 22 hm5C_associated_SNPs_34935 0 0 1 0 1 Nucleus 1 0.500231635562295 0.473125457763672 0.99953672887541 hm5C_site_34682 DeepMRMD:0.473125457763672;iRNA_m5C:0.99953672887541 34683 chr11 598398 598398 1 + C T SKCM 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG GTCTTTCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG < 41bp 1 0.135634290945272 1 0.35151869058609 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598398 nonsynonymous SNV 0.146 4 6 hm5C_associated_SNPs_34936 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34683 DeepMRMD:1;iRNA_m5C:0.999536712157815 34684 chr16 23700962 23700962 1 + C T SKCM 23700976 + 23700956 23700996 41 CTGCACCTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA CTGCACTTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA < 41bp 1 0.190336303018708 1 0.131855338811874 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700976 chr16:23700962 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_34937 0 0 1 0 1 Ribosome 1 0.500231643919798 1 0.999536712160405 hm5C_site_34684 DeepMRMD:1;iRNA_m5C:0.999536712160405 34685 chr19 7676661 7676661 1 + C T SKCM 7676663 + 7676643 7676683 41 GGAGACCCTGTGCTCCTCCGCTCTGTGAGCTCGGACAGCCT GGAGACCCTGTGCTCCTCTGCTCTGTGAGCTCGGACAGCCT < 41bp 1 0.284400253289427 1 0.153377294540405 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7676663 chr19:7676661 nonsynonymous SNV 0.982 3 19 hm5C_associated_SNPs_34938 0 0 1 0 1 nucleus 1 0.500231632961221 1 0.999536734077558 hm5C_site_34685 DeepMRMD:1;iRNA_m5C:0.999536734077558 34686 chr1 173454548 173454548 1 + C T SKCM 173454543 + 173454523 173454563 41 AGAGCCCACAGAAAAGTTACCTTTTCCCATCATCGATGATA AGAGCCCACAGAAAAGTTACCTTTTTCCATCATCGATGATA < 41bp 1 0.10453367319268 1 0.00985977053642273 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454543 chr1:173454548 nonsynonymous SNV 0.999 4 26 hm5C_associated_SNPs_34940 0 0 1 0 2 Ribosome 1 0.500231832645011 1 0.999536334709979 hm5C_site_34686 DeepMRMD:1;iRNA_m5C:0.999536334709979 34687 chr6 7581130 7581130 1 + G A SKCM 7581125 + 7581105 7581145 41 ACTCTCTGAAAGAGCTGCAGCTGCAGAAGCAGAAGGTGGAA ACTCTCTGAAAGAGCTGCAGCTGCAAAAGCAGAAGGTGGAA < 41bp 1 0.642898126036436 1 0.549298524856567 experiment 0.714203747927129 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7581125 chr6:7581130 synonymous SNV . 0 26 hm5C_associated_SNPs_34943 0 0 1 0 0 Nucleus 1 0.500230804712624 0.901402950286866 0.999538390574751 hm5C_site_34687 DeepMRMD:0.901402950286866;iRNA_m5C:0.999538390574751 34688 chr10 70525792 70525792 1 + C T SKCM 70525803 + 70525783 70525823 41 TTGAGTGTCCTATTGGACTACAGATTAGAGGATAATAAAGA TTGAGTGTCTTATTGGACTACAGATTAGAGGATAATAAAGA < 41bp 1 0.234427854993762 1 0.336956381797791 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70525803 chr10:70525792 synonymous SNV . 0 10 hm5C_associated_SNPs_34944 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34688 DeepMRMD:1;iRNA_m5C:0.999536712157815 34689 chr19 50983459 50983459 1 + C T SKCM 50983456 + 50983436 50983476 41 GGAAGCTGGTGGCTATGTCTCCTCCTTTGTCCCTGCGGTGA GGAAGCTGGTGGCTATGTCTCCTTCTTTGTCCCTGCGGTGA < 41bp 1 0.0633663023343558 1 0.154699176549911 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983456 chr19:50983459 nonsynonymous SNV 0.807 4 24 hm5C_associated_SNPs_34945 0 0 1 0 2 Cytosol 1 0.500198950142355 1 0.999602099715289 hm5C_site_34689 DeepMRMD:1;iRNA_m5C:0.999602099715289 34690 chr9 33912014 33912014 1 + C G SKCM 33912033 + 33912013 33912053 41 CCCAGCCAATGTCGATGCTTCAGTTATGTTCAGGAAATGGA CGCAGCCAATGTCGATGCTTCAGTTATGTTCAGGAAATGGA < 41bp 1 0.138940540068682 1 0.0724875032901764 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33912033 chr9:33912014 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_34946 0 0 1 0 2 Cytosol 1 0.500229748436858 1 0.999540503126285 hm5C_site_34690 DeepMRMD:1;iRNA_m5C:0.999540503126285 34691 chr10 129866491 129866491 1 + C T SKCM 129866472 + 129866452 129866492 41 CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCC CTTCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTTC < 41bp 1 0.106040556867452 1 0.0431082546710968 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866472 chr10:129866491 synonymous SNV . 0 40 hm5C_associated_SNPs_34948 0 0 0 2 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34691 DeepMRMD:1;iRNA_m5C:0.999536712157815 34692 chr17 43323053 43323053 1 + C T SKCM 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCTCAGG < 41bp 1 0.4569715250029 1 0.291624009609222 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323037 chr17:43323053 nonsynonymous SNV 0.838 4 37 hm5C_associated_SNPs_34949 0 0 1 1 3 chromatin 1 0.500231248314408 1 0.999537503371184 hm5C_site_34692 DeepMRMD:1;iRNA_m5C:0.999537503371184 34693 chr2 179257251 179257251 1 + C T SKCM 179257242 + 179257222 179257262 41 GATCTCCTTCCACCAACAGACGCCCGGTTCCGGCCAGATCA GATCTCCTTCCACCAACAGACGCCCGGTTTCGGCCAGATCA < 41bp 1 0.223669174678501 1 0.156005263328552 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179257242 chr2:179257251 synonymous SNV . 0 30 hm5C_associated_SNPs_34950 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34693 DeepMRMD:1;iRNA_m5C:0.999536712157815 34694 chr2 179257251 179257251 1 + C T SKCM 179257245 + 179257225 179257265 41 CTCCTTCCACCAACAGACGCCCGGTTCCGGCCAGATCAAAG CTCCTTCCACCAACAGACGCCCGGTTTCGGCCAGATCAAAG < 41bp 1 0.0947525061558143 1 0.0858584940433502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179257245 chr2:179257251 synonymous SNV . 0 27 hm5C_associated_SNPs_34951 0 0 0 0 1 Cytosol 1 0.500231644274041 1 0.999536711451918 hm5C_site_34694 DeepMRMD:1;iRNA_m5C:0.999536711451918 34695 chr2 179257251 179257251 1 + C T SKCM 179257252 + 179257232 179257272 41 CACCAACAGACGCCCGGTTCCGGCCAGATCAAAGGTGAGGA CACCAACAGACGCCCGGTTTCGGCCAGATCAAAGGTGAGGA < 41bp 1 0.333000623935929 1 0.51738029718399 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179257252 chr2:179257251 synonymous SNV . 0 20 hm5C_associated_SNPs_34952 0 0 0 0 1 Cytosol 1 0.500231643921092 0.96523940563202 0.999536712157815 hm5C_site_34695 DeepMRMD:0.96523940563202;iRNA_m5C:0.999536712157815 34696 chr10 102112181 102112181 1 + G A SKCM 102112188 + 102112168 102112208 41 CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG CTCATCGTCTGTGAAGCCACCGCTCTTACAAAGCTCGGCTG < 41bp 1 0.312956613488361 1 0.445779979228973 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102112188 chr10:102112181 stopgain 0.887 1 14 hm5C_associated_SNPs_34954 0 0 1 0 2 Ribosome 1 0.500232098217637 1 0.999535803564727 hm5C_site_34696 DeepMRMD:1;iRNA_m5C:0.999535803564727 34697 chr17 37676259 37676259 1 + C T SKCM 37676240 + 37676220 37676260 41 CAGCACTTGATTTATTGGACCACATGCTGACACTAGATCCT CAGCACTTGATTTATTGGACCACATGCTGACACTAGATCTT < 41bp 1 0.143344659298962 1 0.0492675304412842 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676240 chr17:37676259 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_34955 0 0 1 0 1 Nucleus 1 0.500231825395812 1 0.999536349208376 hm5C_site_34697 DeepMRMD:1;iRNA_m5C:0.999536349208376 34698 chr17 37676259 37676259 1 + C T SKCM 37676272 + 37676252 37676292 41 CTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACA CTAGATCTTAGTAAGCGGTGCACAGCTGAACAGACCCTACA < 41bp 1 0.209714270647293 1 0.162405729293823 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37676272 chr17:37676259 nonsynonymous SNV 0.999 4 8 hm5C_associated_SNPs_34956 0 0 1 0 1 Nucleus 1 0.500231638418933 1 0.999536723162135 hm5C_site_34698 DeepMRMD:1;iRNA_m5C:0.999536723162135 34699 chr1 44069402 44069402 1 + C T SKCM 44069418 + 44069398 44069438 41 CGGGCCGACGAGGCGCGGCCCAACACCATAGATTTCGGCAA CGGGTCGACGAGGCGCGGCCCAACACCATAGATTTCGGCAA < 41bp 1 0.395155312364092 1 0.126823157072067 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44069418 chr1:44069402 nonsynonymous SNV 0.566 1 5 hm5C_associated_SNPs_34957 0 0 1 0 0 Ribosome 1 0.500229930058421 1 0.999540139883159 hm5C_site_34699 DeepMRMD:1;iRNA_m5C:0.999540139883159 34700 chr11 404269 404269 1 + C T SKCM 404268 + 404248 404288 41 GAAGTCCTCCCGGGCAGCATCCAGCCTCCTGGCCAACCTGT GAAGTCCTCCCGGGCAGCATCTAGCCTCCTGGCCAACCTGT < 41bp 1 0.310341199198893 1 0.453245997428894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:404268 chr11:404269 synonymous SNV . 0 22 hm5C_associated_SNPs_34958 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34700 DeepMRMD:1;iRNA_m5C:0.999536712157815 34701 chr14 21549981 21549981 1 + C T SKCM 21549961 + 21549941 21549981 41 GGTGCCAGCAGTGGAGGGGCCCAGTGGGGGCCCCGCAGCCC GGTGCCAGCAGTGGAGGGGCCCAGTGGGGGCCCCGCAGCCT < 41bp 1 0.631470334696718 1 0.410953760147095 experiment 0.737059330606564 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549961 chr14:21549981 nonsynonymous SNV 0.660 2 41 hm5C_associated_SNPs_34959 0 0 0 0 0 Cytosol 1 0.500231643372683 1 0.999536713254634 hm5C_site_34701 DeepMRMD:1;iRNA_m5C:0.999536713254634 34702 chr14 21549981 21549981 1 + C T SKCM 21549971 + 21549951 21549991 41 GTGGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGC GTGGAGGGGCCCAGTGGGGGCCCCGCAGCCTCTCGCCCAGC < 41bp 1 0.411908253694677 1 0.291912317276001 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549971 chr14:21549981 nonsynonymous SNV 0.660 2 31 hm5C_associated_SNPs_34960 0 0 0 0 0 Cytosol 1 0.500231643921088 1 0.999536712157824 hm5C_site_34702 DeepMRMD:1;iRNA_m5C:0.999536712157824 34703 chr14 21549981 21549981 1 + C T SKCM 21549972 + 21549952 21549992 41 TGGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGCC TGGAGGGGCCCAGTGGGGGCCCCGCAGCCTCTCGCCCAGCC < 41bp 1 0.326279665607565 1 0.445936173200607 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549972 chr14:21549981 nonsynonymous SNV 0.660 2 30 hm5C_associated_SNPs_34961 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34703 DeepMRMD:1;iRNA_m5C:0.999536712157815 34704 chr14 21549981 21549981 1 + C T SKCM 21549973 + 21549953 21549993 41 GGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGCCT GGAGGGGCCCAGTGGGGGCCCCGCAGCCTCTCGCCCAGCCT < 41bp 1 0.661273005773985 1 0.418106317520142 experiment 0.677453988452031 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549973 chr14:21549981 nonsynonymous SNV 0.660 2 29 hm5C_associated_SNPs_34962 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34704 DeepMRMD:1;iRNA_m5C:0.999536712157815 34705 chr14 21549981 21549981 1 + C T SKCM 21549974 + 21549954 21549994 41 GAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGCCTC GAGGGGCCCAGTGGGGGCCCCGCAGCCTCTCGCCCAGCCTC < 41bp 1 0.642245540429415 1 0.710642158985138 experiment 0.71550891914117 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549974 chr14:21549981 nonsynonymous SNV 0.660 2 28 hm5C_associated_SNPs_34963 0 0 0 0 0 Cytosol 1 0.500231643921092 0.578715682029724 0.999536712157816 hm5C_site_34705 DeepMRMD:0.578715682029724;iRNA_m5C:0.999536712157816 34706 chr1 227618505 227618505 1 + G A SKCM 227618502 + 227618482 227618522 41 CAGACAGAAGGATGTAAAGTCTGGAAAATACAGCCAGATCC CAGACAGAAGGATGTAAAGTCTGAAAAATACAGCCAGATCC < 41bp 1 0.570053540959683 1 0.501811861991882 experiment 0.859892918080633 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC42BPA;ZNF678 ENSG00000234277;ENSG00000242757 ncRNA_exonic Human other chr1:227618502 chr1:227618505 . . 0 24 hm5C_associated_SNPs_34965 0 0 0 3 0 unknown 1 0.500231647585785 0.996376276016236 0.99953670482843 hm5C_site_34706 DeepMRMD:0.996376276016236;iRNA_m5C:0.99953670482843 34707 chr2 86705312 86705312 1 + C T SKCM 86705303 + 86705283 86705323 41 TTATTTGCAGGTGCTGCTTACAAGACTTTCTCTTGGCTAAA TTATTTGCAGGTGCTGCTTACAAGACTTTTTCTTGGCTAAA < 41bp 1 0.526111738613603 1 0.37786602973938 experiment 0.947776522772795 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM3A ENSG00000115548 CDS Human protein_coding chr2:86705303 chr2:86705312 synonymous SNV . 0 30 hm5C_associated_SNPs_34966 0 0 1 0 2 chromatin 1 0.50023164390915 1 0.9995367121817 hm5C_site_34707 DeepMRMD:1;iRNA_m5C:0.9995367121817 34708 chr11 73063910 73063910 1 + C T SKCM 73063909 + 73063889 73063929 41 GCTGAAGCAGCCAGAGAACTCCGTGCTCTGTGACCCTTCAC GCTGAAGCAGCCAGAGAACTCTGTGCTCTGTGACCCTTCAC < 41bp 1 0.465120982755293 1 0.491467356681824 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73063909 chr11:73063910 synonymous SNV . 0 22 hm5C_associated_SNPs_34967 0 0 0 0 1 Cytosol 1 0.500231652115925 1 0.999536695768151 hm5C_site_34708 DeepMRMD:1;iRNA_m5C:0.999536695768151 34709 chr16 2122313 2122313 1 + C T SKCM 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATTTTTACTTCCCCTTGCAGTGTGGACCAGC < 41bp 1 0.102161814905649 1 0.0213526487350464 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122313 synonymous SNV . 0 13 hm5C_associated_SNPs_34968 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921166 1 0.999536712157668 hm5C_site_34709 DeepMRMD:1;iRNA_m5C:0.999536712157668 34710 chr11 68131380 68131380 1 + C T SKCM 68131399 + 68131379 68131419 41 TCCAGGTGCTGAGCCAGGAGCGGCAGCCTTTCTGTGAGTGC TTCAGGTGCTGAGCCAGGAGCGGCAGCCTTTCTGTGAGTGC < 41bp 1 0.632439459937736 1 0.349342346191406 experiment 0.735121080124528 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68131399 chr11:68131380 synonymous SNV . 0 2 hm5C_associated_SNPs_34970 0 0 1 0 1 Endoplasmic reticulum 1 0.500231584399289 1 0.999536831201421 hm5C_site_34710 DeepMRMD:1;iRNA_m5C:0.999536831201421 34711 chr1 171756877 171756877 1 + C T SKCM 171756878 + 171756858 171756898 41 TCTGGTTGTACCTTCAGGTCCCCTTTCTGTCTGTGGGTGGG TCTGGTTGTACCTTCAGGTTCCCTTTCTGTCTGTGGGTGGG < 41bp 1 0.0946675120221161 1 0.0265224575996399 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171756878 chr1:171756877 synonymous SNV . 0 20 hm5C_associated_SNPs_34971 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_34711 DeepMRMD:1;iRNA_m5C:0.999536712157815 34712 chr2 211456626 211456626 1 + C T SKCM 211456636 + 211456616 211456656 41 CATGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAA CATGGCTATGTCTTGGACAACACCCTCCCTGCTGGCTGGAA < 41bp 1 0.228879066654749 1 0.0752942562103271 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456636 chr2:211456626 nonsynonymous SNV 0.994 3 11 hm5C_associated_SNPs_34972 0 0 1 0 2 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_34712 DeepMRMD:1;iRNA_m5C:0.999536712157818 34713 chr2 211456626 211456626 1 + C T SKCM 211456638 + 211456618 211456658 41 TGGCTATGCCTTGGACAACACCCTCCCTGCTGGCTGGAAAC TGGCTATGTCTTGGACAACACCCTCCCTGCTGGCTGGAAAC < 41bp 1 0.0527104058280887 1 0.11089363694191 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPS1 ENSG00000021826 CDS Human protein_coding chr2:211456638 chr2:211456626 nonsynonymous SNV 0.994 3 9 hm5C_associated_SNPs_34973 0 0 1 0 2 Nucleus 1 0.500231643917689 1 0.999536712164621 hm5C_site_34713 DeepMRMD:1;iRNA_m5C:0.999536712164621 34714 chr1 22332159 22332159 1 + G A SKCM 22332162 + 22332142 22332182 41 CCTCTGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTG CCTCTGCCTGCAGGAGGAATCTGACCTACCAGGTGGTGTTG < 41bp 1 0.655445925708439 1 0.447704285383224 experiment 0.689108148583123 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332162 chr1:22332159 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_34974 0 0 0 0 1 Endoplasmic reticulum 1 0.500231595205895 1 0.99953680958821 hm5C_site_34714 DeepMRMD:1;iRNA_m5C:0.99953680958821 34715 chr1 22332159 22332159 1 + G A SKCM 22332166 + 22332146 22332186 41 TGCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTG TGCCTGCAGGAGGAATCTGACCTACCAGGTGGTGTTGGGTG < 41bp 1 0.0545673749930163 1 0.131043076515198 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332166 chr1:22332159 nonsynonymous SNV 0.001 1 14 hm5C_associated_SNPs_34975 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_34715 DeepMRMD:1;iRNA_m5C:0.999536712157815 34716 chr1 22332159 22332159 1 + G A SKCM 22332167 + 22332147 22332187 41 GCCTGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGA GCCTGCAGGAGGAATCTGACCTACCAGGTGGTGTTGGGTGA < 41bp 1 0.417897994284598 1 0.062026709318161 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332167 chr1:22332159 nonsynonymous SNV 0.001 1 13 hm5C_associated_SNPs_34976 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34716 DeepMRMD:1;iRNA_m5C:0.999536712157815 34717 chr1 22332159 22332159 1 + G A SKCM 22332170 + 22332150 22332190 41 TGCAGGAGGGATCTGACCTACCAGGTGGTGTTGGGTGAGTA TGCAGGAGGAATCTGACCTACCAGGTGGTGTTGGGTGAGTA < 41bp 1 0.433474719779974 1 0.461737483739853 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332170 chr1:22332159 nonsynonymous SNV 0.001 1 10 hm5C_associated_SNPs_34977 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34717 DeepMRMD:1;iRNA_m5C:0.999536712157815 34718 chr7 66660264 66660264 1 + C T SKCM 66660256 + 66660236 66660276 41 TTGTCCACGAGTTGGTGGATCTGATCCCCGAATATGAAATT TTGTCCACGAGTTGGTGGATCTGATCCCTGAATATGAAATT < 41bp 1 0.252093053132825 1 0.0808355510234833 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66660256 chr7:66660264 synonymous SNV . 0 29 hm5C_associated_SNPs_34978 0 0 0 0 1 Endoplasmic reticulum 1 0.500232008940791 1 0.999535982118418 hm5C_site_34718 DeepMRMD:1;iRNA_m5C:0.999535982118418 34719 chr7 66660263 66660263 1 + C T SKCM 66660256 + 66660236 66660276 41 TTGTCCACGAGTTGGTGGATCTGATCCCCGAATATGAAATT TTGTCCACGAGTTGGTGGATCTGATCCTCGAATATGAAATT < 41bp 1 0.252504700517009 1 0.09261554479599 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66660256 chr7:66660263 nonsynonymous SNV 0.028 1 28 hm5C_associated_SNPs_34979 0 0 0 0 1 Endoplasmic reticulum 1 0.500231641208761 1 0.999536717582479 hm5C_site_34719 DeepMRMD:1;iRNA_m5C:0.999536717582479 34720 chr17 19216468 19216468 1 + C T SKCM 19216480 + 19216460 19216500 41 GATGCTCTCCCCAGCTCGGGCCCCGCGGCCCAGAAAGCAGA GATGCTCTTCCCAGCTCGGGCCCCGCGGCCCAGAAAGCAGA < 41bp 1 0.16804722594682 1 0.13419908285141 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EPN2 ENSG00000072134 CDS Human protein_coding chr17:19216480 chr17:19216468 synonymous SNV . 0 9 hm5C_associated_SNPs_34980 0 0 1 0 2 Nucleus 1 0.500231643921049 1 0.999536712157902 hm5C_site_34720 DeepMRMD:1;iRNA_m5C:0.999536712157902 34721 chr15 65157708 65157708 1 + C T SKCM 65157697 + 65157677 65157717 41 CCCTCTCAGGCTGAGGGCACCCCAGGAACTCCTCCAAAGGA CCCTCTCAGGCTGAGGGCACCCCAGGAACTCTTCCAAAGGA < 41bp 1 0.276337403398831 1 0.313595592975616 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHO2 ENSG00000241839 CDS Human protein_coding chr15:65157697 chr15:65157708 nonsynonymous SNV 0.012 0 32 hm5C_associated_SNPs_34981 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_34721 DeepMRMD:1;iRNA_m5C:0.999536712157815 34722 chr16 597807 597807 1 + C T SKCM 597822 + 597802 597842 41 ATTGACCTGGCCGGAGACACCGTGCGTTACACGCCCGCCAG ATTGATCTGGCCGGAGACACCGTGCGTTACACGCCCGCCAG < 41bp 1 0.638138304044769 1 0.769440650939941 experiment 0.723723391910462 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:597822 chr16:597807 synonymous SNV . 0 6 hm5C_associated_SNPs_34982 0 0 1 0 0 chromatin 1 0.500231643921093 0.461118698120118 0.999536712157815 hm5C_site_34722 DeepMRMD:0.461118698120118;iRNA_m5C:0.999536712157815 34723 chr3 193336693 193336693 1 + C T SKCM 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATTGTG < 41bp 1 0.0438712991258159 1 0.0392166078090668 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336693 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_34983 0 0 1 0 2 Nucleus 1 0.500231640728948 1 0.999536718542104 hm5C_site_34723 DeepMRMD:1;iRNA_m5C:0.999536718542104 34724 chr19 50912133 50912133 1 + C T SKCM 50912125 + 50912105 50912145 41 CCACAACCTGTGTTACACCACGCTCCTTCGGCCCGGGACTG CCACAACCTGTGTTACACCACGCTCCTTTGGCCCGGGACTG < 41bp 1 0.179037226049424 1 0.26110577583313 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912125 chr19:50912133 nonsynonymous SNV 0.091 2 29 hm5C_associated_SNPs_34984 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_34724 DeepMRMD:1;iRNA_m5C:0.999536712157814 34725 chr14 75746585 75746585 1 + C T SKCM 75746582 + 75746562 75746602 41 CCTTCTGTTTTGTTCTAGGACTTCTGCACGGACCTGGCCGT CCTTCTGTTTTGTTCTAGGACTTTTGCACGGACCTGGCCGT < 41bp 1 0.0904659611827078 1 0.0085122287273407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746582 chr14:75746585 synonymous SNV . 0 24 hm5C_associated_SNPs_34985 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34725 DeepMRMD:1;iRNA_m5C:0.999536712157815 34726 chr14 75746585 75746585 1 + C T SKCM 75746590 + 75746570 75746610 41 TTTGTTCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTG TTTGTTCTAGGACTTTTGCACGGACCTGGCCGTCTCCAGTG < 41bp 1 0.489064224078705 1 0.484352827072144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746590 chr14:75746585 synonymous SNV . 0 16 hm5C_associated_SNPs_34986 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_34726 DeepMRMD:1;iRNA_m5C:0.999536712157815 34727 chr14 75746585 75746585 1 + C T SKCM 75746594 + 75746574 75746614 41 TTCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAA TTCTAGGACTTTTGCACGGACCTGGCCGTCTCCAGTGCCAA < 41bp 1 0.144719267823 1 0.0843986570835114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746594 chr14:75746585 synonymous SNV . 0 12 hm5C_associated_SNPs_34987 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643919901 1 0.999536712160199 hm5C_site_34727 DeepMRMD:1;iRNA_m5C:0.999536712160199 34728 chr14 75746585 75746585 1 + C T SKCM 75746595 + 75746575 75746615 41 TCTAGGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAAC TCTAGGACTTTTGCACGGACCTGGCCGTCTCCAGTGCCAAC < 41bp 1 0.466433824838491 1 0.0716502368450165 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746595 chr14:75746585 synonymous SNV . 0 11 hm5C_associated_SNPs_34988 0 0 1 0 1 Endoplasmic reticulum 1 0.500231641381612 1 0.999536717236777 hm5C_site_34728 DeepMRMD:1;iRNA_m5C:0.999536717236777 34729 chr14 75746585 75746585 1 + C T SKCM 75746599 + 75746579 75746619 41 GGACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCA GGACTTTTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCA < 41bp 1 0.054028439268148 1 0.0193266868591309 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746599 chr14:75746585 synonymous SNV . 0 7 hm5C_associated_SNPs_34989 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920769 1 0.999536712158463 hm5C_site_34729 DeepMRMD:1;iRNA_m5C:0.999536712158463 34730 chr14 75746585 75746585 1 + C T SKCM 75746600 + 75746580 75746620 41 GACTTCTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCAT GACTTTTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCAT < 41bp 1 0.0708962884345335 1 0.0511701703071594 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746600 chr14:75746585 synonymous SNV . 0 6 hm5C_associated_SNPs_34990 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164393956 1 0.999536712120879 hm5C_site_34730 DeepMRMD:1;iRNA_m5C:0.999536712120879 34731 chr14 75746585 75746585 1 + C T SKCM 75746605 + 75746585 75746625 41 CTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCA TTGCACGGACCTGGCCGTCTCCAGTGCCAACTTCATTCCCA < 41bp 1 0.408854263076074 1 0.343775868415833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FOS ENSG00000170345 CDS Human protein_coding chr14:75746605 chr14:75746585 synonymous SNV . 0 1 hm5C_associated_SNPs_34991 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644043813 1 0.999536711912373 hm5C_site_34731 DeepMRMD:1;iRNA_m5C:0.999536711912373 34732 chr1 110172954 110172954 1 + C T SKCM 110172951 + 110172931 110172971 41 TCCTCAGCTATCACCGGAATCCGCTACCGGAGTACCTGTCC TCCTCAGCTATCACCGGAATCCGTTACCGGAGTACCTGTCC < 41bp 1 0.116147369020476 1 0.176055818796158 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110172951 chr1:110172954 synonymous SNV . 0 24 hm5C_associated_SNPs_34992 0 0 0 0 1 Cytosol 1 0.500232879550428 1 0.999534240899143 hm5C_site_34732 DeepMRMD:1;iRNA_m5C:0.999534240899143 34733 chr4 77660165 77660165 1 + G A SKCM 77660170 + 77660150 77660190 41 CTGGCATCTCTGGCCGGGAGCGTTCAGGCTCCATGGACAAT CTGGCATCTCTGGCCAGGAGCGTTCAGGCTCCATGGACAAT < 41bp 1 0.0142050857300909 1 0.0500082671642303 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660170 chr4:77660165 nonsynonymous SNV 0.010 0 16 hm5C_associated_SNPs_34993 0 0 0 0 0 Ribosome 1 0.500228588707561 1 0.999542822584878 hm5C_site_34733 DeepMRMD:1;iRNA_m5C:0.999542822584878 34734 chr4 77660165 77660165 1 + G A SKCM 77660180 + 77660160 77660200 41 TGGCCGGGAGCGTTCAGGCTCCATGGACAATACTTCTGCTC TGGCCAGGAGCGTTCAGGCTCCATGGACAATACTTCTGCTC < 41bp 1 0.106537034542904 1 0.335759282112122 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660180 chr4:77660165 nonsynonymous SNV 0.010 0 6 hm5C_associated_SNPs_34994 0 0 0 0 0 Ribosome 1 0.500231616112714 1 0.999536767774573 hm5C_site_34734 DeepMRMD:1;iRNA_m5C:0.999536767774573 34735 chr16 30680926 30680926 1 + C T SKCM 30680941 + 30680921 30680961 41 CAGTTCCCCACCTAGGGGCCCTGGCCCAGCTCGGGCTGACA CAGTTTCCCACCTAGGGGCCCTGGCCCAGCTCGGGCTGACA < 41bp 1 0.23023829963233 1 0.0392715930938721 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FBRS ENSG00000156860 CDS Human protein_coding chr16:30680941 chr16:30680926 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_34995 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_34735 DeepMRMD:1;iRNA_m5C:0.999536712157815 34736 chr1 46070653 46070653 1 + C T SKCM 46070650 + 46070630 46070670 41 GCTAATGAGTGTGGAGAAGCCTTCTTTTTCTATGGGAAATC GCTAATGAGTGTGGAGAAGCCTTTTTTTTCTATGGGAAATC < 41bp 1 0.131992456763282 1 0.0375110805034637 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46070650 chr1:46070653 synonymous SNV . 0 24 hm5C_associated_SNPs_34996 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34736 DeepMRMD:1;iRNA_m5C:0.999536712157815 34737 chr4 77660166 77660166 1 + G A SKCM 77660170 + 77660150 77660190 41 CTGGCATCTCTGGCCGGGAGCGTTCAGGCTCCATGGACAAT CTGGCATCTCTGGCCGAGAGCGTTCAGGCTCCATGGACAAT < 41bp 1 0.0173231522536322 1 0.0660448670387268 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660170 chr4:77660166 synonymous SNV . 0 17 hm5C_associated_SNPs_34997 0 0 0 0 0 Ribosome 1 0.500231644002685 1 0.999536711994631 hm5C_site_34737 DeepMRMD:1;iRNA_m5C:0.999536711994631 34738 chr4 77660166 77660166 1 + G A SKCM 77660180 + 77660160 77660200 41 TGGCCGGGAGCGTTCAGGCTCCATGGACAATACTTCTGCTC TGGCCGAGAGCGTTCAGGCTCCATGGACAATACTTCTGCTC < 41bp 1 0.122858731673226 1 0.310396194458008 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77660180 chr4:77660166 synonymous SNV . 0 7 hm5C_associated_SNPs_34998 0 0 0 0 0 Ribosome 1 0.500598569481232 1 0.998802861037536 hm5C_site_34738 DeepMRMD:1;iRNA_m5C:0.998802861037536 34739 chr19 46509882 46509882 1 + G A SKCM 46509891 + 46509871 46509911 41 CGGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC CGGAACCGCAAAATGGGGGGCCGCCCAGGCTCCTTGGCCCC < 41bp 1 0.0798475749081885 1 0.102805644273758 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509891 chr19:46509882 synonymous SNV . 0 12 hm5C_associated_SNPs_34999 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_34739 DeepMRMD:1;iRNA_m5C:0.999536712157815 34740 chr19 46509882 46509882 1 + G A SKCM 46509892 + 46509872 46509912 41 GGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCCC GGAACCGCAAAATGGGGGGCCGCCCAGGCTCCTTGGCCCCC < 41bp 1 0.247111386587416 1 0.0730681717395782 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509892 chr19:46509882 synonymous SNV . 0 11 hm5C_associated_SNPs_35000 0 0 1 0 1 chromatin 1 0.500231643921101 1 0.999536712157797 hm5C_site_34740 DeepMRMD:1;iRNA_m5C:0.999536712157797 34741 chr7 6631381 6631381 1 + C T SKCM 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT TAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT < 41bp 1 0.154569717838597 1 0.19147065281868 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631381 synonymous SNV . 0 1 hm5C_associated_SNPs_35001 0 0 1 0 1 chromatin 1 0.500231643921052 1 0.999536712157897 hm5C_site_34741 DeepMRMD:1;iRNA_m5C:0.999536712157897 34742 chr19 40883707 40883707 1 + C T SKCM 40883722 + 40883702 40883742 41 GTGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGC GTGGTTCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGC < 41bp 1 0.485108675866191 1 0.35788506269455 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883722 chr19:40883707 synonymous SNV . 0 6 hm5C_associated_SNPs_35002 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34742 DeepMRMD:1;iRNA_m5C:0.999536712157815 34743 chr19 40883707 40883707 1 + C T SKCM 40883723 + 40883703 40883743 41 TGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGCC TGGTTCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGCC < 41bp 1 0.33188790355235 1 0.48746532201767 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883723 chr19:40883707 synonymous SNV . 0 5 hm5C_associated_SNPs_35003 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_34743 DeepMRMD:1;iRNA_m5C:0.999536712157815 34744 chr22 35783096 35783096 1 + C T SKCM 35783079 + 35783059 35783099 41 ACCAAGTTCAAGCAGCTCTACCGCTCCCGCATGAACTCCCT ACCAAGTTCAAGCAGCTCTACCGCTCCCGCATGAACTTCCT < 41bp 1 0.144101662688718 1 0.112682223320007 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35783079 chr22:35783096 nonsynonymous SNV 0.990 3 38 hm5C_associated_SNPs_35004 0 0 1 0 1 exosome 1 0.500231644068527 1 0.999536711862947 hm5C_site_34744 DeepMRMD:1;iRNA_m5C:0.999536711862947 34745 chr12 56347546 56347546 1 + G T SKCM 56347561 + 56347541 56347581 41 TTCTTGAGCTAAGGGGGACACCCTTGGCCTCCAAGCCAGCC TTCTTTAGCTAAGGGGGACACCCTTGGCCTCCAAGCCAGCC < 41bp 1 0.235724130332258 1 0.057699054479599 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56347561 chr12:56347546 nonsynonymous SNV 0.567 1 6 hm5C_associated_SNPs_35005 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34745 DeepMRMD:1;iRNA_m5C:0.999536712157815 34746 chr19 42839511 42839511 1 + G A SKCM 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCGTCCTATACAACTTCTCCGCCAACACCTGGAAGTCTT < 41bp 1 0.0961372477937991 1 0.244496077299118 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839511 nonsynonymous SNV 0.889 2 35 hm5C_associated_SNPs_35006 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34746 DeepMRMD:1;iRNA_m5C:0.999536712157815 34747 chr2 233272996 233272996 1 + G A SKCM 233272995 + 233272975 233273015 41 AGGTGATCCTAGGTGGAGGCCGAAAGTACATGTTTCCCATG AGGTGATCCTAGGTGGAGGCCAAAAGTACATGTTTCCCATG < 41bp 1 0.599914394333754 1 0.221086144447327 experiment 0.800171211332493 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233272995 chr2:233272996 nonsynonymous SNV 0.066 4 22 hm5C_associated_SNPs_35007 0 0 0 0 1 exosome 1 0.5002316411837 1 0.999536717632599 hm5C_site_34747 DeepMRMD:1;iRNA_m5C:0.999536717632599 34748 chr5 50058984 50058984 1 + G A SKCM 50059003 + 50058983 50059023 41 TGAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA TAAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA < 41bp 1 0.657474192362967 1 0.390415489673615 experiment 0.685051615274066 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PARP8 ENSG00000151883 CDS Human protein_coding chr5:50059003 chr5:50058984 synonymous SNV . 0 2 hm5C_associated_SNPs_35008 0 0 0 0 2 Nucleus 1 0.500231643924656 1 0.999536712150687 hm5C_site_34748 DeepMRMD:1;iRNA_m5C:0.999536712150687 34749 chr11 66812074 66812074 1 + C T SKCM 66812087 + 66812067 66812107 41 GCCGATGCTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCT GCCGATGTTGTGGGGGAGATCCTGCTCTCCCTCAGCTACCT < 41bp 1 0.311224853260595 1 0.115586012601852 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYT12 ENSG00000173227 CDS Human protein_coding chr11:66812087 chr11:66812074 nonsynonymous SNV 0.658 1 8 hm5C_associated_SNPs_35009 0 0 0 0 1 nucleolus 1 0.500231643917938 1 0.999536712164124 hm5C_site_34749 DeepMRMD:1;iRNA_m5C:0.999536712164124 34750 chr7 99956333 99956333 1 + C T SKCM 99956353 + 99956333 99956373 41 CCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTCTC TCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTCTC < 41bp 1 0.0827443273527435 1 0.0324512422084808 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956353 chr7:99956333 nonsynonymous SNV 0.004 0 1 hm5C_associated_SNPs_35010 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34750 DeepMRMD:1;iRNA_m5C:0.999536712157815 34751 chr16 14970238 14970238 1 + C T SKCM 14970220 + 14970200 14970240 41 TTTCTTCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATCGA TTTCTTCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATTGA < 41bp 1 0.270446021872222 1 0.13329228758812 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14970220 chr16:14970238 synonymous SNV . 0 39 hm5C_associated_SNPs_35011 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34751 DeepMRMD:1;iRNA_m5C:0.999536712157815 34752 chr16 14970238 14970238 1 + C T SKCM 14970225 + 14970205 14970245 41 TCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATCGAGATCC TCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATTGAGATCC < 41bp 1 0.603480570225473 1 0.7672199010849 experiment 0.793038859549055 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14970225 chr16:14970238 synonymous SNV . 0 34 hm5C_associated_SNPs_35012 0 0 1 0 1 Nucleus 1 0.500231643921092 0.4655601978302 0.999536712157815 hm5C_site_34752 DeepMRMD:0.4655601978302;iRNA_m5C:0.999536712157815 34753 chr17 1747873 1747873 1 + T G SKCM 1747884 + 1747864 1747904 41 GTTTTCAGCTTTCATGTTGGCGACACAGTTGAACCCTCTCG GTTTTCAGCGTTCATGTTGGCGACACAGTTGAACCCTCTCG < 41bp 1 0.640939514908297 1 0.176349282264709 experiment 0.718120970183407 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPA1 ENSG00000132383 CDS Human protein_coding chr17:1747884 chr17:1747873 synonymous SNV . 0 10 hm5C_associated_SNPs_35013 0 0 1 0 1 chromatin 1 0.500231644476089 1 0.999536711047822 hm5C_site_34753 DeepMRMD:1;iRNA_m5C:0.999536711047822 34754 chr16 31087723 31087723 1 + C T SKCM 31087730 + 31087710 31087750 41 AGCTCTCTCGGCACCGAGAACTGCTCCATCCATCTCCCAAC AGCTCTCTCGGCATCGAGAACTGCTCCATCCATCTCCCAAC < 41bp 1 0.311412028347814 1 0.222746223211288 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31087730 chr16:31087723 synonymous SNV . 0 14 hm5C_associated_SNPs_35014 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643922405 1 0.999536712155191 hm5C_site_34754 DeepMRMD:1;iRNA_m5C:0.999536712155191 34755 chr19 50753044 50753044 1 + C T SKCM 50753062 + 50753042 50753082 41 CTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT CTTGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT < 41bp 1 0.251821069396481 1 0.573439359664917 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753062 chr19:50753044 synonymous SNV . 0 3 hm5C_associated_SNPs_35015 0 0 0 0 1 cytosol 1 0.500231651805766 0.853121280670166 0.999536696388469 hm5C_site_34755 DeepMRMD:0.853121280670166;iRNA_m5C:0.999536696388469 34756 chr17 4799490 4799490 1 + C T SKCM 4799505 + 4799485 4799525 41 CAGTCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGA CAGTCTTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGA < 41bp 1 0.108807876955003 1 0.114114433526993 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799505 chr17:4799490 synonymous SNV . 0 6 hm5C_associated_SNPs_35016 0 0 0 0 1 Ribosome 1 0.500233018621714 1 0.999533962756571 hm5C_site_34756 DeepMRMD:1;iRNA_m5C:0.999533962756571 34757 chr17 4799490 4799490 1 + C T SKCM 4799508 + 4799488 4799528 41 TCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGACCT TCTTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGACCT < 41bp 1 0.176317766438624 1 0.314470291137695 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799508 chr17:4799490 synonymous SNV . 0 3 hm5C_associated_SNPs_35017 0 0 0 0 1 Ribosome 1 0.500231643904424 1 0.999536712191152 hm5C_site_34757 DeepMRMD:1;iRNA_m5C:0.999536712191152 34758 chr19 54965776 54965776 1 + C T SKCM 54965774 + 54965754 54965794 41 CACAGCACAGCCAGGCGGGGCCCGCCACGGGCCAGGCCTAT CACAGCACAGCCAGGCGGGGCCTGCCACGGGCCAGGCCTAT < 41bp 1 0.0256837109545055 1 0.153463631868362 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54965774 chr19:54965776 synonymous SNV . 0 23 hm5C_associated_SNPs_35018 0 0 0 0 0 chromatin 1 0.500231643921488 1 0.999536712157023 hm5C_site_34758 DeepMRMD:1;iRNA_m5C:0.999536712157023 34759 chr19 54965776 54965776 1 + C T SKCM 54965775 + 54965755 54965795 41 ACAGCACAGCCAGGCGGGGCCCGCCACGGGCCAGGCCTATG ACAGCACAGCCAGGCGGGGCCTGCCACGGGCCAGGCCTATG < 41bp 1 0.273247368726747 1 0.105753928422928 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54965775 chr19:54965776 synonymous SNV . 0 22 hm5C_associated_SNPs_35019 0 0 0 0 0 chromatin 1 0.500233576188602 1 0.999532847622795 hm5C_site_34759 DeepMRMD:1;iRNA_m5C:0.999532847622795 34760 chr11 65338939 65338939 1 + C T SKCM 65338926 + 65338906 65338946 41 CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGC CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTTGACCTGC < 41bp 1 0.268519570961555 1 0.0415893197059631 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338926 chr11:65338939 stopgain 0.097 0 34 hm5C_associated_SNPs_35020 0 0 0 0 1 Cytosol 1 0.500231660004422 1 0.999536679991157 hm5C_site_34760 DeepMRMD:1;iRNA_m5C:0.999536679991157 34761 chr6 32123528 32123528 1 + C T SKCM 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTTCCTCTCCTCTCCACAGATGGGACAGTATG < 41bp 1 0.633382160442263 1 0.934066534042358 experiment 0.733235679115474 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123528 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_35021 0 0 1 1 2 chromatin 1 0.500231643921099 0.131866931915284 0.999536712157802 hm5C_site_34761 DeepMRMD:0.131866931915284;iRNA_m5C:0.999536712157802 34762 chr3 33183916 33183916 1 + C T SKCM 33183934 + 33183914 33183954 41 CTCTTGGAACTGGAGGAGACCAGCTAGCCCACAGCAACCAA CTTTTGGAACTGGAGGAGACCAGCTAGCCCACAGCAACCAA < 41bp 1 0.468231158448168 1 0.128020584583282 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CRTAP ENSG00000170275 CDS Human protein_coding chr3:33183934 chr3:33183916 synonymous SNV . 0 3 hm5C_associated_SNPs_35022 0 0 1 0 1 Endoplasmic reticulum 1 0.500231562447095 1 0.999536875105809 hm5C_site_34762 DeepMRMD:1;iRNA_m5C:0.999536875105809 34763 chr3 47041780 47041780 1 + C T SKCM 47041773 + 47041753 47041793 41 TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC TCCTTCGCCACTGGATGGGCCGCGGCCTTTTCCTGCTGCTC < 41bp 1 0.346132209248652 1 0.356560587882996 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041773 chr3:47041780 synonymous SNV . 0 28 hm5C_associated_SNPs_35023 0 0 1 0 1 Nucleus 1 0.500231643921073 1 0.999536712157855 hm5C_site_34763 DeepMRMD:1;iRNA_m5C:0.999536712157855 34764 chrX 57405199 57405199 1 + G A SKCM 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATAGC < 41bp 1 0.495273160334196 1 0.164447844028473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405199 nonsynonymous SNV 0.982 0 39 hm5C_associated_SNPs_35024 0 0 0 0 1 nucleus 1 0.500229517226507 1 0.999540965546987 hm5C_site_34764 DeepMRMD:1;iRNA_m5C:0.999540965546987 34765 chr14 100934380 100934380 1 + G A SKCM 100934368 + 100934348 100934388 41 TTGCCTGCAGGTATGGAACGCCGTGGACTCCGGGCACTGCC TTGCCTGCAGGTATGGAACGCCGTGGACTCCGAGCACTGCC < 41bp 1 0.216205649626246 1 0.701315462589264 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100934368 chr14:100934380 nonsynonymous SNV 0.094 3 33 hm5C_associated_SNPs_35025 0 0 0 0 1 chromatin 1 0.500231643969764 0.597369074821472 0.999536712060471 hm5C_site_34765 DeepMRMD:0.597369074821472;iRNA_m5C:0.999536712060471 34766 chr15 43668794 43668794 1 + C T SKCM 43668796 + 43668776 43668816 41 TCTGTTTTGCAGCCTTATCGCCAAGCACTGCTTGATTTGGA TCTGTTTTGCAGCCTTATTGCCAAGCACTGCTTGATTTGGA < 41bp 1 0.256310217606827 1 0.576678991317749 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43668796 chr15:43668794 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_35026 0 0 1 0 1 Ribosome 1 0.500231686775171 0.846642017364502 0.999536626449657 hm5C_site_34766 DeepMRMD:0.846642017364502;iRNA_m5C:0.999536626449657 34767 chr11 65824782 65824782 1 + C T SKCM 65824781 + 65824761 65824801 41 GCCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC GCCCCACTCCTACAGTTTTGCTCATGGGAGCCCCTGTTCCC < 41bp 1 0.65480140015583 1 0.0873859822750092 experiment 0.69039719968834 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824781 chr11:65824782 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_35027 0 0 1 0 2 Nucleus 1 0.500231643923829 1 0.999536712152342 hm5C_site_34767 DeepMRMD:1;iRNA_m5C:0.999536712152342 34768 chr5 176016570 176016570 1 + C T SKCM 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTTTCCACACCGAAGGAGGAGGTGGGCGCCA < 41bp 1 0.526123881121516 1 0.832670450210571 experiment 0.947752237756967 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016570 synonymous SNV . 0 13 hm5C_associated_SNPs_35028 0 0 0 0 2 Exosome 1 0.500231643887153 0.334659099578858 0.999536712225694 hm5C_site_34768 DeepMRMD:0.334659099578858;iRNA_m5C:0.999536712225694 34769 chr18 13056630 13056630 1 + T A SKCM 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT ACCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT < 41bp 1 0.118954213832498 1 0.297754287719727 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056630 nonsynonymous SNV 0.037 0 1 hm5C_associated_SNPs_35029 0 0 1 0 1 Nucleus 1 0.500231643086898 1 0.999536713826204 hm5C_site_34769 DeepMRMD:1;iRNA_m5C:0.999536713826204 34770 chr1 109806907 109806907 1 + C G SKCM 109806891 + 109806871 109806911 41 AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCA AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTGTGCA < 41bp 1 0.0389997861100306 1 0.0759551227092743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806891 chr1:109806907 nonsynonymous SNV 0.793 1 37 hm5C_associated_SNPs_35030 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34770 DeepMRMD:1;iRNA_m5C:0.999536712157815 34771 chr1 109806907 109806907 1 + C G SKCM 109806892 + 109806872 109806912 41 GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCAC GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTGTGCAC < 41bp 1 0.1708418894714 1 0.428240358829498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806892 chr1:109806907 nonsynonymous SNV 0.793 1 36 hm5C_associated_SNPs_35031 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643820049 1 0.999536712359901 hm5C_site_34771 DeepMRMD:1;iRNA_m5C:0.999536712359901 34772 chr1 109806907 109806907 1 + C G SKCM 109806893 + 109806873 109806913 41 AGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACC AGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTGTGCACC < 41bp 1 0.222947974995634 1 0.238129705190659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806893 chr1:109806907 nonsynonymous SNV 0.793 1 35 hm5C_associated_SNPs_35032 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34772 DeepMRMD:1;iRNA_m5C:0.999536712157815 34773 chr1 109806907 109806907 1 + C G SKCM 109806894 + 109806874 109806914 41 GCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCT GCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTGTGCACCT < 41bp 1 0.135525698585975 1 0.42741721868515 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806894 chr1:109806907 nonsynonymous SNV 0.793 1 34 hm5C_associated_SNPs_35033 0 0 1 0 1 Endoplasmic reticulum 1 0.500228402145711 1 0.999543195708577 hm5C_site_34773 DeepMRMD:1;iRNA_m5C:0.999543195708577 34774 chr1 109806907 109806907 1 + C G SKCM 109806895 + 109806875 109806915 41 CAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCTG CAGAGGGCAACCTGGGCCCCCGGCTGCATGGTGTGCACCTG < 41bp 1 0.26656008670213 1 0.502279460430145 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806895 chr1:109806907 nonsynonymous SNV 0.793 1 33 hm5C_associated_SNPs_35034 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644005828 0.99544107913971 0.999536711988345 hm5C_site_34774 DeepMRMD:0.99544107913971;iRNA_m5C:0.999536711988345 34775 chr8 77619807 77619807 1 + C T SKCM 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCTGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC < 41bp 1 0.246495634067456 1 0.598444283008575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619807 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_35035 0 0 1 0 1 Ribosome 1 0.500231643921092 0.80311143398285 0.999536712157815 hm5C_site_34775 DeepMRMD:0.80311143398285;iRNA_m5C:0.999536712157815 34776 chr7 45688334 45688334 1 + G A SKCM 45688321 + 45688301 45688341 41 GGACTGCTACTACTGCGTGTCGGGCCTCACCCAGCCCAAGA GGACTGCTACTACTGCGTGTCGGGCCTCACCCAACCCAAGA < 41bp 1 0.422023472361054 1 0.814473390579224 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45688321 chr7:45688334 synonymous SNV . 0 34 hm5C_associated_SNPs_35036 0 0 0 0 2 Nucleus 1 0.500231991198761 0.371053218841552 0.999536017602477 hm5C_site_34776 DeepMRMD:0.371053218841552;iRNA_m5C:0.999536017602477 34777 chr5 40853291 40853291 1 + G A SKCM 40853307 + 40853287 40853327 41 GAAGGAAGAACATGGAGGGCCTTCAAGCTGCCCTCCAGGAA GAAGAAAGAACATGGAGGGCCTTCAAGCTGCCCTCCAGGAA < 41bp 1 0.543887482724882 1 0.175069242715836 experiment 0.912225034550235 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CARD6 ENSG00000132357 CDS Human protein_coding chr5:40853307 chr5:40853291 synonymous SNV . 0 5 hm5C_associated_SNPs_35037 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34777 DeepMRMD:1;iRNA_m5C:0.999536712157815 34778 chr18 12718630 12718630 1 + C T SKCM 12718624 + 12718604 12718644 41 CATATCAGCGTAATGATCTGCAGCTTCGTAGGTATGTTTCT CATATCAGCGTAATGATCTGCAGCTTTGTAGGTATGTTTCT < 41bp 1 0.473384554977033 1 0.285904586315155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718624 chr18:12718630 nonsynonymous SNV 0.943 0 27 hm5C_associated_SNPs_35038 0 0 1 0 1 Ribosome 1 0.500231758186649 1 0.999536483626703 hm5C_site_34778 DeepMRMD:1;iRNA_m5C:0.999536483626703 34779 chr11 74329644 74329644 1 + C T SKCM 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTTCA < 41bp 1 0.662644062033491 1 0.248652756214142 experiment 0.674711875933018 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329644 nonsynonymous SNV 0.987 0 39 hm5C_associated_SNPs_35039 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_34779 DeepMRMD:1;iRNA_m5C:0.999536712157815 34780 chr11 74329644 74329644 1 + C T SKCM 74329633 + 74329613 74329653 41 CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTTCAAAAAGTT < 41bp 1 0.153809337144241 1 0.0938304960727692 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329633 chr11:74329644 nonsynonymous SNV 0.987 0 32 hm5C_associated_SNPs_35040 0 0 1 0 1 Nucleus 1 0.500231643922245 1 0.99953671215551 hm5C_site_34780 DeepMRMD:1;iRNA_m5C:0.99953671215551 34781 chr11 74329644 74329644 1 + C T SKCM 74329645 + 74329625 74329665 41 GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA GCTGAATCCTCTTCGTCTTTCAAAAAGTTTGAGCAGTCACA < 41bp 1 0.520514959890076 1 0.415853947401047 experiment 0.958970080219849 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329645 chr11:74329644 nonsynonymous SNV 0.987 0 20 hm5C_associated_SNPs_35041 0 0 1 0 1 Nucleus 1 0.500207647469006 1 0.999584705061989 hm5C_site_34781 DeepMRMD:1;iRNA_m5C:0.999584705061989 34782 chr11 65780821 65780821 1 + C T SKCM 65780832 + 65780812 65780852 41 CTTGTGGTTCCCTGGCAGAACTCCTCTCAGCTCCTAAAGCA CTTGTGGTTTCCTGGCAGAACTCCTCTCAGCTCCTAAAGCA < 41bp 1 0.43381602587393 1 0.318683505058289 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CST6 ENSG00000175315 CDS Human protein_coding chr11:65780832 chr11:65780821 nonsynonymous SNV 0.298 4 10 hm5C_associated_SNPs_35042 0 0 0 0 1 Cytosol 1 0.500231645128491 1 0.999536709743019 hm5C_site_34782 DeepMRMD:1;iRNA_m5C:0.999536709743019 34783 chr11 70275245 70275245 1 + G A SKCM 70275262 + 70275242 70275282 41 GGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG GGAAAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG < 41bp 1 0.42407747689841 1 0.368834108114243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275262 chr11:70275245 synonymous SNV . 0 4 hm5C_associated_SNPs_35043 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_34783 DeepMRMD:1;iRNA_m5C:0.999536712157815 34784 chr17 38498981 38498981 1 + G A SKCM 38498984 + 38498964 38499004 41 AGAGTGTAGAAGTGGGGGGTCCCACCCCTAATCCCTTCCTA AGAGTGTAGAAGTGGGGAGTCCCACCCCTAATCCCTTCCTA < 41bp 1 0.0627344037756297 1 0.265538334846497 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RARA ENSG00000131759 CDS Human protein_coding chr17:38498984 chr17:38498981 nonsynonymous SNV 0.995 1 18 hm5C_associated_SNPs_35045 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_34784 DeepMRMD:1;iRNA_m5C:0.999536712157815 34785 chr22 32241015 32241015 1 + C T SKCM 32241034 + 32241014 32241054 41 TCCCTGAAGTTCTGGAGGACCCGCTTCCTGCTGCTGCCAGC TTCCTGAAGTTCTGGAGGACCCGCTTCCTGCTGCTGCCAGC < 41bp 1 0.285033422786394 1 0.11973911523819 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32241034 chr22:32241015 nonsynonymous SNV 0.991 4 2 hm5C_associated_SNPs_35046 0 0 1 0 0 chromatin 1 0.500231654592663 1 0.999536690814675 hm5C_site_34785 DeepMRMD:1;iRNA_m5C:0.999536690814675 34786 chr19 42880626 42880626 1 + C T SKCM 42880609 + 42880589 42880629 41 CCCCTGCTGCTGACAGGGGCCGGTGGGCCCTGGGGACCCAT CCCCTGCTGCTGACAGGGGCCGGTGGGCCCTGGGGACTCAT < 41bp 1 0.215757662664521 1 0.720882296562195 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42880609 chr19:42880626 nonsynonymous SNV 0.998 0 38 hm5C_associated_SNPs_35047 0 0 1 0 0 Endoplasmic reticulum 1 0.500231836372137 0.55823540687561 0.999536327255726 hm5C_site_34786 DeepMRMD:0.55823540687561;iRNA_m5C:0.999536327255726 34787 chr16 2286835 2286835 1 + T A SKCM 2286855 + 2286835 2286875 41 TCTGCTGGCCGCACTCTGGGCGCTGGAAGCCGCCGGGACCG ACTGCTGGCCGCACTCTGGGCGCTGGAAGCCGCCGGGACCG < 41bp 1 0.664766812349333 1 0.436602830886841 experiment 0.670466375301333 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1L2 ENSG00000167968 CDS Human protein_coding chr16:2286855 chr16:2286835 synonymous SNV . 0 1 hm5C_associated_SNPs_35048 0 0 0 0 2 exosome 1 0.500231648139458 1 0.999536703721083 hm5C_site_34787 DeepMRMD:1;iRNA_m5C:0.999536703721083 34788 chr17 48757161 48757161 1 + G A SKCM 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTAACATTTGCTCTGAACTGGATGATACGAATGATGTC < 41bp 1 0.569609538482301 1 0.417320221662521 experiment 0.860780923035398 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757161 synonymous SNV . 0 6 hm5C_associated_SNPs_35049 0 0 0 0 2 Endoplasmic reticulum 1 0.500231642731567 1 0.999536714536867 hm5C_site_34788 DeepMRMD:1;iRNA_m5C:0.999536714536867 34789 chr6 118015232 118015232 1 + G A SKCM 118015223 + 118015203 118015243 41 GCCATTTGGCAGTGAAGGTGCTGTCTCCGGAAGATGGAAAA GCCATTTGGCAGTGAAGGTGCTGTCTCCGAAAGATGGAAAA < 41bp 1 0.199371336455239 1 0.147792220115662 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUS1 ENSG00000153989 CDS Human protein_coding chr6:118015223 chr6:118015232 nonsynonymous SNV 0.992 4 30 hm5C_associated_SNPs_35050 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643651883 1 0.999536712696235 hm5C_site_34789 DeepMRMD:1;iRNA_m5C:0.999536712696235 34790 chr5 65349733 65349733 1 + C T SKCM 65349718 + 65349698 65349738 41 AAAGCACTGAAGATCTCTCCCCTCAGAAAAGTGGTCCAGTT AAAGCACTGAAGATCTCTCCCCTCAGAAAAGTGGTTCAGTT < 41bp 1 0.231689365999377 1 0.141365528106689 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ERBIN ENSG00000112851 CDS Human protein_coding chr5:65349718 chr5:65349733 nonsynonymous SNV 0.913 3 36 hm5C_associated_SNPs_35051 0 0 1 0 0 Nucleus 1 0.500231731061038 1 0.999536537877923 hm5C_site_34790 DeepMRMD:1;iRNA_m5C:0.999536537877923 34791 chr5 65349733 65349733 1 + C T SKCM 65349721 + 65349701 65349741 41 GCACTGAAGATCTCTCCCCTCAGAAAAGTGGTCCAGTTGGA GCACTGAAGATCTCTCCCCTCAGAAAAGTGGTTCAGTTGGA < 41bp 1 0.581719104990309 1 0.889339208602905 experiment 0.836561790019383 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ERBIN ENSG00000112851 CDS Human protein_coding chr5:65349721 chr5:65349733 nonsynonymous SNV 0.913 3 33 hm5C_associated_SNPs_35052 0 0 1 0 0 Nucleus 1 0.500231643921202 0.22132158279419 0.999536712157597 hm5C_site_34791 DeepMRMD:0.22132158279419;iRNA_m5C:0.999536712157597 34792 chr5 65349733 65349733 1 + C T SKCM 65349734 + 65349714 65349754 41 CTCCCCTCAGAAAAGTGGTCCAGTTGGATCTGTTGTGAAAT CTCCCCTCAGAAAAGTGGTTCAGTTGGATCTGTTGTGAAAT < 41bp 1 0.0859031913437833 1 0.0790905654430389 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ERBIN ENSG00000112851 CDS Human protein_coding chr5:65349734 chr5:65349733 nonsynonymous SNV 0.913 3 20 hm5C_associated_SNPs_35053 0 0 1 0 0 Nucleus 1 0.500231643921111 1 0.999536712157778 hm5C_site_34792 DeepMRMD:1;iRNA_m5C:0.999536712157778 34793 chr17 1648489 1648489 1 + G A SKCM 1648475 + 1648455 1648495 41 CCCTTTCTCCACAGTTCTCCCCTGTGAGCGCCATGGAGCCC CCCTTTCTCCACAGTTCTCCCCTGTGAGCGCCATAGAGCCC < 41bp 1 0.120824881281477 1 0.0561139285564423 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1648475 chr17:1648489 nonsynonymous SNV 0.029 1 35 hm5C_associated_SNPs_35054 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643186774 1 0.999536713626452 hm5C_site_34793 DeepMRMD:1;iRNA_m5C:0.999536713626452 34794 chr19 17322820 17322820 1 + C T SKCM 17322803 + 17322783 17322823 41 AAGGCCGTCGTCCTTCGTAACGGTCAGAGTGAAGACCCCCC AAGGCCGTCGTCCTTCGTAACGGTCAGAGTGAAGACCTCCC < 41bp 1 0.169093383657815 1 0.279147863388062 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17322803 chr19:17322820 nonsynonymous SNV 0.991 2 38 hm5C_associated_SNPs_35055 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34794 DeepMRMD:1;iRNA_m5C:0.999536712157815 34795 chr8 48883186 48883186 1 + C T SKCM 48883170 + 48883150 48883190 41 ACATCTTGCTGTGTGGCGACCCTGGTACCAGCAAGTCCCAG ACATCTTGCTGTGTGGCGACCCTGGTACCAGCAAGTTCCAG < 41bp 1 0.251555165219836 1 0.175814270973206 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48883170 chr8:48883186 nonsynonymous SNV 0.998 4 37 hm5C_associated_SNPs_35056 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34795 DeepMRMD:1;iRNA_m5C:0.999536712157815 34796 chr1 155255641 155255641 1 + G C SKCM 155255657 + 155255637 155255677 41 TCTCGTGGTGCGTGAGGGCTCCGTGGGGAGGAAGATGTACT TCTCCTGGTGCGTGAGGGCTCCGTGGGGAGGAAGATGTACT < 41bp 1 0.302386310884168 1 0.287759900093079 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HCN3 ENSG00000143630 CDS Human protein_coding chr1:155255657 chr1:155255641 nonsynonymous SNV 0.902 3 5 hm5C_associated_SNPs_35057 0 0 1 0 0 chromatin 1 0.500231643921103 1 0.999536712157794 hm5C_site_34796 DeepMRMD:1;iRNA_m5C:0.999536712157794 34797 chr12 56428832 56428832 1 + C T SKCM 56428827 + 56428807 56428847 41 ACCATTGTGGTGGGCCGGCACAGTCCTGCCTACGCCAAAGA ACCATTGTGGTGGGCCGGCACAGTCTTGCCTACGCCAAAGA < 41bp 1 0.345223317336345 1 0.196818143129349 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56428827 chr12:56428832 nonsynonymous SNV 0.990 2 26 hm5C_associated_SNPs_35058 0 0 0 0 0 Cytosol 1 0.50023164544193 1 0.99953670911614 hm5C_site_34797 DeepMRMD:1;iRNA_m5C:0.99953670911614 34798 chr19 42848898 42848898 1 + C T SKCM 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCGTCACGTCTCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.271886264999266 1 0.303104251623154 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848898 synonymous SNV . 0 12 hm5C_associated_SNPs_35059 0 0 1 0 2 Endoplasmic reticulum 1 0.500231673813599 1 0.999536652372802 hm5C_site_34798 DeepMRMD:1;iRNA_m5C:0.999536652372802 34799 chr16 30976366 30976366 1 + C T SKCM 30976360 + 30976340 30976380 41 GGCCTCCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAA GGCCTCCTGCCTCAGAGGCTCCACCCTCGGAGCCTCCAGAA < 41bp 1 0.110702469445153 1 0.0841494500637054 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976360 chr16:30976366 nonsynonymous SNV 0.947 2 27 hm5C_associated_SNPs_35060 0 0 1 0 0 Cytosol 1 0.500231643919165 1 0.99953671216167 hm5C_site_34799 DeepMRMD:1;iRNA_m5C:0.99953671216167 34800 chr16 30976366 30976366 1 + C T SKCM 30976361 + 30976341 30976381 41 GCCTCCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAAC GCCTCCTGCCTCAGAGGCTCCACCCTCGGAGCCTCCAGAAC < 41bp 1 0.220310221308642 1 0.0231173038482666 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976361 chr16:30976366 nonsynonymous SNV 0.947 2 26 hm5C_associated_SNPs_35061 0 0 1 0 0 Cytosol 1 0.500231597149937 1 0.999536805700125 hm5C_site_34800 DeepMRMD:1;iRNA_m5C:0.999536805700125 34801 chr16 30976366 30976366 1 + C T SKCM 30976363 + 30976343 30976383 41 CTCCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCT CTCCTGCCTCAGAGGCTCCACCCTCGGAGCCTCCAGAACCT < 41bp 1 0.0567688848286941 1 0.0399086475372314 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976363 chr16:30976366 nonsynonymous SNV 0.947 2 24 hm5C_associated_SNPs_35062 0 0 1 0 0 Cytosol 1 0.500231641429573 1 0.999536717140855 hm5C_site_34801 DeepMRMD:1;iRNA_m5C:0.999536717140855 34802 chr16 30976366 30976366 1 + C T SKCM 30976364 + 30976344 30976384 41 TCCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTG TCCTGCCTCAGAGGCTCCACCCTCGGAGCCTCCAGAACCTG < 41bp 1 0.139246477426659 1 0.272528171539307 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976364 chr16:30976366 nonsynonymous SNV 0.947 2 23 hm5C_associated_SNPs_35063 0 0 1 0 0 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_34802 DeepMRMD:1;iRNA_m5C:0.999536712157818 34803 chr16 30976366 30976366 1 + C T SKCM 30976365 + 30976345 30976385 41 CCTGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTGG CCTGCCTCAGAGGCTCCACCCTCGGAGCCTCCAGAACCTGG < 41bp 1 0.688772973130436 1 0.548563301563263 experiment 0.622454053739128 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976365 chr16:30976366 nonsynonymous SNV 0.947 2 22 hm5C_associated_SNPs_35064 0 0 1 0 0 Cytosol 1 0.500231643921523 0.902873396873474 0.999536712156954 hm5C_site_34803 DeepMRMD:0.902873396873474;iRNA_m5C:0.999536712156954 34804 chr16 30976366 30976366 1 + C T SKCM 30976367 + 30976347 30976387 41 TGCCTCAGAGGCTCCACCCCCGGAGCCTCCAGAACCTGGTG TGCCTCAGAGGCTCCACCCTCGGAGCCTCCAGAACCTGGTG < 41bp 1 0.567609476942029 1 0.931490659713745 experiment 0.864781046115943 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30976367 chr16:30976366 nonsynonymous SNV 0.947 2 20 hm5C_associated_SNPs_35065 0 0 1 0 0 Cytosol 1 0.500231643921097 0.13701868057251 0.999536712157806 hm5C_site_34804 DeepMRMD:0.13701868057251;iRNA_m5C:0.999536712157806 34805 chr5 141353267 141353267 1 + C T SKCM 141353260 + 141353240 141353280 41 GTCTGTCCAAGGTGGAGAAACCAGGATCTATTTGGATTTGC GTCTGTCCAAGGTGGAGAAACCAGGATTTATTTGGATTTGC < 41bp 1 0.545820345902935 1 0.109068363904953 experiment 0.908359308194129 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141353260 chr5:141353267 synonymous SNV . 0 28 hm5C_associated_SNPs_35066 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34805 DeepMRMD:1;iRNA_m5C:0.999536712157815 34806 chr6 44107307 44107307 1 + G A SKCM 44107298 + 44107278 44107318 41 TGCTGGTGGTTGTGGGCGTCCTCTCCGTAGGCATCGTGCTG TGCTGGTGGTTGTGGGCGTCCTCTCCGTAAGCATCGTGCTG < 41bp 1 0.346268613215924 1 0.156663924455643 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107298 chr6:44107307 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_35067 0 0 1 0 1 Ribosome 1 0.500169538331222 1 0.999660923337555 hm5C_site_34806 DeepMRMD:1;iRNA_m5C:0.999660923337555 34807 chr19 35741388 35741388 1 + C T SKCM 35741406 + 35741386 35741426 41 CCCCGGCCAGCGTCGACAACCAGCTCAATGCCCAGCTGGCA CCTCGGCCAGCGTCGACAACCAGCTCAATGCCCAGCTGGCA < 41bp 1 0.527618372051746 1 0.464501619338989 experiment 0.944763255896508 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741406 chr19:35741388 nonsynonymous SNV 0.175 2 3 hm5C_associated_SNPs_35068 0 0 1 0 0 chromatin 1 0.5002316438714 1 0.9995367122572 hm5C_site_34807 DeepMRMD:1;iRNA_m5C:0.9995367122572 34808 chr1 25679448 25679448 1 + G A SKCM 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTATGTGGATTCTTTTTGAAGGTTATGTTGCT < 41bp 1 0.0807212106978821 1 0.0228175520896912 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679448 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_35069 0 0 1 0 2 Ribosome 1 0.500232200229452 1 0.999535599541097 hm5C_site_34808 DeepMRMD:1;iRNA_m5C:0.999535599541097 34809 chr11 130013310 130013310 1 + C T SKCM 130013308 + 130013288 130013328 41 AGAACCATGGCTATGAGAACCCCACCTACAAATACCTGGAG AGAACCATGGCTATGAGAACCCTACCTACAAATACCTGGAG < 41bp 1 0.0508060069822396 1 0.518036723136902 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130013308 chr11:130013310 synonymous SNV . 0 23 hm5C_associated_SNPs_35070 0 0 1 0 1 Endoplasmic reticulum 1 0.500231642905362 0.963926553726196 0.999536714189276 hm5C_site_34809 DeepMRMD:0.963926553726196;iRNA_m5C:0.999536714189276 34810 chr12 49663387 49663387 1 + C T SKCM 49663396 + 49663376 49663416 41 AGGAGATGATTCCTTCAACACCTTCTTCAGTGAAACGGGTG AGGAGATGATTTCTTCAACACCTTCTTCAGTGAAACGGGTG < 41bp 1 0.0368109467171888 1 0.0350474119186401 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TUBA1C ENSG00000167553 CDS Human protein_coding chr12:49663396 chr12:49663387 nonsynonymous SNV 0.997 3 12 hm5C_associated_SNPs_35071 0 0 1 0 1 Cytosol 1 0.500231588645183 1 0.999536822709634 hm5C_site_34810 DeepMRMD:1;iRNA_m5C:0.999536822709634 34811 chr12 51844702 51844702 1 + G A SKCM 51844686 + 51844666 51844706 41 GAACTCTGTATGTGGGAGTTCGGATGCCGCTTGGCCGGCAG GAACTCTGTATGTGGGAGTTCGGATGCCGCTTGGCCAGCAG < 41bp 1 0.573632873184659 1 0.752200245857239 experiment 0.852734253630682 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A8 ENSG00000050438 CDS Human protein_coding chr12:51844686 chr12:51844702 nonsynonymous SNV 0.997 2 37 hm5C_associated_SNPs_35072 0 0 0 0 1 exosome 1 0.500227701399244 0.495599508285522 0.999544597201512 hm5C_site_34811 DeepMRMD:0.495599508285522;iRNA_m5C:0.999544597201512 34812 chr2 207174998 207174998 1 + C T SKCM 207175003 + 207174983 207175023 41 GTGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGA GTGGCCTTAGATAAATCATGCCATCGTCATCCTCCAGCAGA < 41bp 1 0.0434770250398174 1 0.0249637961387634 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207175003 chr2:207174998 nonsynonymous SNV 0.205 0 16 hm5C_associated_SNPs_35073 0 0 1 0 0 Nucleus 1 0.500231641230164 1 0.999536717539672 hm5C_site_34812 DeepMRMD:1;iRNA_m5C:0.999536717539672 34813 chr2 207174998 207174998 1 + C T SKCM 207175004 + 207174984 207175024 41 TGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGAG TGGCCTTAGATAAATCATGCCATCGTCATCCTCCAGCAGAG < 41bp 1 0.25811674422558 1 0.100204795598984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207175004 chr2:207174998 nonsynonymous SNV 0.205 0 15 hm5C_associated_SNPs_35074 0 0 1 0 0 Nucleus 1 0.500231643921115 1 0.99953671215777 hm5C_site_34813 DeepMRMD:1;iRNA_m5C:0.99953671215777 34814 chr17 7490757 7490757 1 + C T SKCM 7490756 + 7490736 7490776 41 GCAACCAGGAAACCGGAGATCCCCTGATGGCTGGGACCTTT GCAACCAGGAAACCGGAGATCTCCTGATGGCTGGGACCTTT < 41bp 1 0.625533618983062 1 0.206520408391953 experiment 0.748932762033875 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MPDU1 ENSG00000129255 CDS Human protein_coding chr17:7490756 chr17:7490757 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_35075 0 0 1 0 1 Ribosome 1 0.500231643921066 1 0.999536712157868 hm5C_site_34814 DeepMRMD:1;iRNA_m5C:0.999536712157868 34815 chr5 176524637 176524637 1 + G A SKCM 176524624 + 176524604 176524644 41 ATTCTGTCTTCAGCCACGACCCCCTGCCATTGGGATCCAGC ATTCTGTCTTCAGCCACGACCCCCTGCCATTGGAATCCAGC < 41bp 1 0.124213177560473 1 0.110180377960205 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524624 chr5:176524637 nonsynonymous SNV 0.042 1 34 hm5C_associated_SNPs_35076 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921241 1 0.999536712157518 hm5C_site_34815 DeepMRMD:1;iRNA_m5C:0.999536712157518 34816 chr5 176524637 176524637 1 + G A SKCM 176524627 + 176524607 176524647 41 CTGTCTTCAGCCACGACCCCCTGCCATTGGGATCCAGCTCC CTGTCTTCAGCCACGACCCCCTGCCATTGGAATCCAGCTCC < 41bp 1 0.336017036521619 1 0.0446194708347321 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524627 chr5:176524637 nonsynonymous SNV 0.042 1 31 hm5C_associated_SNPs_35077 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643880054 1 0.999536712239891 hm5C_site_34816 DeepMRMD:1;iRNA_m5C:0.999536712239891 34817 chr1 233482327 233482327 1 + G A SKCM 233482335 + 233482315 233482355 41 GGCCCCCGAAGTGATCAAGTCTTCCTTGTTTTCTAAGGGAA GGCCCCCGAAGTAATCAAGTCTTCCTTGTTTTCTAAGGGAA < 41bp 1 0.113359890762031 1 0.0777270197868347 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482335 chr1:233482327 synonymous SNV . 0 13 hm5C_associated_SNPs_35078 0 0 1 0 1 unknown 1 0.500231643921094 1 0.999536712157813 hm5C_site_34817 DeepMRMD:1;iRNA_m5C:0.999536712157813 34818 chr15 48626681 48626681 1 + C T SKCM 48626680 + 48626660 48626700 41 ACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAG ACGGACATTCAGATAGCGCTCTCTTCTGGGTGTTATGGAAG < 41bp 1 0.26023148278378 1 0.0589902997016907 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626680 chr15:48626681 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_35079 0 0 1 0 2 Cytosol 1 0.50023164392829 1 0.999536712143419 hm5C_site_34818 DeepMRMD:1;iRNA_m5C:0.999536712143419 34819 chr15 48626681 48626681 1 + C T SKCM 48626682 + 48626662 48626702 41 GGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAG GGACATTCAGATAGCGCTCTCTTCTGGGTGTTATGGAAGAG < 41bp 1 0.259332555761963 1 0.0674889981746674 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DUT ENSG00000128951 CDS Human protein_coding chr15:48626682 chr15:48626681 nonsynonymous SNV 0.981 4 20 hm5C_associated_SNPs_35080 0 0 1 0 2 Cytosol 1 0.500231644028564 1 0.999536711942872 hm5C_site_34819 DeepMRMD:1;iRNA_m5C:0.999536711942872 34820 chr2 183622485 183622485 1 + G A SKCM 183622482 + 183622462 183622502 41 AGTATCATTCTTTTTGTGCCCAGGAAAACGTTCAAAGATAC AGTATCATTCTTTTTGTGCCCAGAAAAACGTTCAAAGATAC < 41bp 1 0.650346700256144 1 0.589644432067871 experiment 0.699306599487712 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183622482 chr2:183622485 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_35082 0 0 1 0 2 Ribosome 1 0.500231643921093 0.820711135864258 0.999536712157815 hm5C_site_34820 DeepMRMD:0.820711135864258;iRNA_m5C:0.999536712157815 34821 chr7 127228564 127228564 1 + C T SKCM 127228572 + 127228552 127228592 41 CATGGGCCTCACCGTGTCCGCGCTCTTTTCGCGGATCTTCG CATGGGCCTCACTGTGTCCGCGCTCTTTTCGCGGATCTTCG < 41bp 1 0.267138058597112 1 0.0915883183479309 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARF5 ENSG00000004059 CDS Human protein_coding chr7:127228572 chr7:127228564 synonymous SNV . 0 13 hm5C_associated_SNPs_35083 0 0 1 0 1 Endoplasmic reticulum 1 0.50023180252507 1 0.999536394949859 hm5C_site_34821 DeepMRMD:1;iRNA_m5C:0.999536394949859 34822 chr7 127228564 127228564 1 + C T SKCM 127228574 + 127228554 127228594 41 TGGGCCTCACCGTGTCCGCGCTCTTTTCGCGGATCTTCGGG TGGGCCTCACTGTGTCCGCGCTCTTTTCGCGGATCTTCGGG < 41bp 1 0.32980675185684 1 0.136837095022202 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARF5 ENSG00000004059 CDS Human protein_coding chr7:127228574 chr7:127228564 synonymous SNV . 0 11 hm5C_associated_SNPs_35084 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643924689 1 0.999536712150622 hm5C_site_34822 DeepMRMD:1;iRNA_m5C:0.999536712150622 34823 chr7 127228564 127228564 1 + C T SKCM 127228576 + 127228556 127228596 41 GGCCTCACCGTGTCCGCGCTCTTTTCGCGGATCTTCGGGAA GGCCTCACTGTGTCCGCGCTCTTTTCGCGGATCTTCGGGAA < 41bp 1 0.358493178401112 1 0.154471457004547 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARF5 ENSG00000004059 CDS Human protein_coding chr7:127228576 chr7:127228564 synonymous SNV . 0 9 hm5C_associated_SNPs_35085 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34823 DeepMRMD:1;iRNA_m5C:0.999536712157815 34824 chr7 2613102 2613102 1 + G A SKCM 2613101 + 2613081 2613121 41 GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAA GAAAAAGAAGATATGTATGACAAGATTATTGAGTTAAAGAA < 41bp 1 0.435731531563687 1 0.380600273609161 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IQCE ENSG00000106012 CDS Human protein_coding chr7:2613101 chr7:2613102 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_35086 0 0 1 0 2 chromatin 1 0.500231648319957 1 0.999536703360087 hm5C_site_34824 DeepMRMD:1;iRNA_m5C:0.999536703360087 34825 chr16 90028531 90028531 1 + C T SKCM 90028519 + 90028499 90028539 41 TGTTCAGCTACGTGGAGGAGCTGGTGGAGATTCGCGTGAGG TGTTCAGCTACGTGGAGGAGCTGGTGGAGATTTGCGTGAGG < 41bp 1 0.642370071917948 1 0.323983609676361 experiment 0.715259856164104 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028519 chr16:90028531 nonsynonymous SNV 0.995 4 33 hm5C_associated_SNPs_35087 0 0 1 0 1 Ribosome 1 0.500230613202137 1 0.999538773595726 hm5C_site_34825 DeepMRMD:1;iRNA_m5C:0.999538773595726 34826 chr15 63433804 63433804 1 + T C SKCM 63433784 + 63433764 63433804 41 AAGGAAACAAACGTATGGTTCGTGTAGAAAGCAACGGCATT AAGGAAACAAACGTATGGTTCGTGTAGAAAGCAACGGCATC < 41bp 1 0.308857373098651 1 0.067177802324295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LACTB ENSG00000103642 CDS Human protein_coding chr15:63433784 chr15:63433804 nonsynonymous SNV 0.993 1 41 hm5C_associated_SNPs_35088 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34826 DeepMRMD:1;iRNA_m5C:0.999536712157815 34827 chr7 100777090 100777090 1 + C T SKCM 100777083 + 100777063 100777103 41 CTTATGAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATT CTTATGAAAAAGAGGTGCCTCTCTCTGTCCTCACCAACATT < 41bp 1 0.120991816781819 1 0.0999838709831238 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100777083 chr7:100777090 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_35089 0 0 1 0 1 Ribosome 1 0.500231643921726 1 0.999536712156548 hm5C_site_34827 DeepMRMD:1;iRNA_m5C:0.999536712156548 34828 chr7 100777090 100777090 1 + C T SKCM 100777087 + 100777067 100777107 41 TGAAAAAGAGGTGCCTCTCTCTGCCCTCACCAACATTCTGA TGAAAAAGAGGTGCCTCTCTCTGTCCTCACCAACATTCTGA < 41bp 1 0.287931107404178 1 0.307365030050278 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100777087 chr7:100777090 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_35090 0 0 1 0 1 Ribosome 1 0.500231643902382 1 0.999536712195236 hm5C_site_34828 DeepMRMD:1;iRNA_m5C:0.999536712195236 34829 chr3 49049425 49049425 1 + C T SKCM 49049444 + 49049424 49049464 41 CCCTGCACAGACAGGTGCACCCTCTCTTCAGCCTGCCTGAT CTCTGCACAGACAGGTGCACCCTCTCTTCAGCCTGCCTGAT < 41bp 1 0.0478999467316718 1 0.0518608391284943 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR6 ENSG00000178252 CDS Human protein_coding chr3:49049444 chr3:49049425 nonsynonymous SNV 0.993 0 2 hm5C_associated_SNPs_35091 0 0 1 0 0 Nucleus 1 0.500231644333722 1 0.999536711332556 hm5C_site_34829 DeepMRMD:1;iRNA_m5C:0.999536711332556 34830 chr7 36438862 36438862 1 + C T SKCM 36438880 + 36438860 36438900 41 TTCTGTTGCTGTCCCGGCATCACTGCTGGGCATGAGGAGAG TTTTGTTGCTGTCCCGGCATCACTGCTGGGCATGAGGAGAG < 41bp 1 0.683395225090475 1 0.374639689922333 experiment 0.633209549819049 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36438880 chr7:36438862 nonsynonymous SNV 0.008 1 3 hm5C_associated_SNPs_35092 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34830 DeepMRMD:1;iRNA_m5C:0.999536712157815 34831 chr5 140731297 140731297 1 + T G SKCM 140731316 + 140731296 140731336 41 GTGACCTGGAGCCGCGGGAGCTGTTGTCCTACGTGTCCGTG GGGACCTGGAGCCGCGGGAGCTGTTGTCCTACGTGTCCGTG < 41bp 1 0.235130882794175 1 0.0722757279872894 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHGB1 ENSG00000254221 CDS Human protein_coding chr5:140731316 chr5:140731297 nonsynonymous SNV 0.646 3 2 hm5C_associated_SNPs_35094 0 0 0 0 0 exosome 1 0.500231643116809 1 0.999536713766382 hm5C_site_34831 DeepMRMD:1;iRNA_m5C:0.999536713766382 34832 chr11 48152033 48152033 1 + C T SKCM 48152020 + 48152000 48152040 41 TCTTTGCATAGCCCCTGTTCCAGTTTCTGACTTCCGAGTGA TCTTTGCATAGCCCCTGTTCCAGTTTCTGACTTTCGAGTGA < 41bp 1 0.119570907490813 1 0.18213763833046 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48152020 chr11:48152033 synonymous SNV . 0 34 hm5C_associated_SNPs_35095 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643969901 1 0.999536712060198 hm5C_site_34832 DeepMRMD:1;iRNA_m5C:0.999536712060198 34833 chr6 138202176 138202176 1 + C T SKCM 138202184 + 138202164 138202204 41 CCACTCAGAGATCGAGCCAGCGCAGAGATGTGCCTCGAACC CCACTCAGAGATTGAGCCAGCGCAGAGATGTGCCTCGAACC < 41bp 1 0.365176399898178 1 0.319567143917084 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138202184 chr6:138202176 nonsynonymous SNV 0.975 0 13 hm5C_associated_SNPs_35096 0 0 1 0 1 Cytosol 1 0.500231643920776 1 0.999536712158447 hm5C_site_34833 DeepMRMD:1;iRNA_m5C:0.999536712158447 34834 chr2 74438352 74438352 1 + C T SKCM 74438349 + 74438329 74438369 41 ATGCCACTGTTACAATATCTCATCGATATACTCCCAAAGAG ATGCCACTGTTACAATATCTCATTGATATACTCCCAAAGAG < 41bp 1 0.230158166367017 1 0.346586912870407 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74438349 chr2:74438352 stopgain 0.998 1 24 hm5C_associated_SNPs_35097 0 0 1 0 2 Ribosome 1 0.500231686750324 1 0.999536626499352 hm5C_site_34834 DeepMRMD:1;iRNA_m5C:0.999536626499352 34835 chr2 47221620 47221620 1 + C T SKCM 47221605 + 47221585 47221625 41 CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGCCCTGC CATGGGCAAGGAGGAGAGTTCTTTCGCCACTCAGGTCCTGC < 41bp 1 0.0646103040026117 1 0.0183766782283783 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47221605 chr2:47221620 nonsynonymous SNV 0.805 0 36 hm5C_associated_SNPs_35098 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_34835 DeepMRMD:1;iRNA_m5C:0.999536712157814 34836 chr2 15770985 15770985 1 + C T SKCM 15770972 + 15770952 15770992 41 GGCTGCCCTTGAAAAGGAGGCGCAGACATCTTTCCTGCATC GGCTGCCCTTGAAAAGGAGGCGCAGACATCTTTTCTGCATC < 41bp 1 0.534724266093747 1 0.233651667833328 experiment 0.930551467812506 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770972 chr2:15770985 synonymous SNV . 0 34 hm5C_associated_SNPs_35099 0 0 1 0 1 Cytosol 1 0.500231643944569 1 0.999536712110862 hm5C_site_34836 DeepMRMD:1;iRNA_m5C:0.999536712110862 34837 chr2 15770985 15770985 1 + C T SKCM 15770974 + 15770954 15770994 41 CTGCCCTTGAAAAGGAGGCGCAGACATCTTTCCTGCATCTT CTGCCCTTGAAAAGGAGGCGCAGACATCTTTTCTGCATCTT < 41bp 1 0.225910380344006 1 0.434975147247314 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770974 chr2:15770985 synonymous SNV . 0 32 hm5C_associated_SNPs_35100 0 0 1 0 1 Cytosol 1 0.500231646377364 1 0.999536707245271 hm5C_site_34837 DeepMRMD:1;iRNA_m5C:0.999536707245271 34838 chr19 14580207 14580207 1 + C T SKCM 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CAGTGACCAGTGCGGGACACCCCTTTCTGGTGAACCTCTTC < 41bp 1 0.0618734381048598 1 0.0742099285125732 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580207 synonymous SNV . 0 26 hm5C_associated_SNPs_35101 0 0 1 0 1 Ribosome 1 0.500231643891392 1 0.999536712217215 hm5C_site_34838 DeepMRMD:1;iRNA_m5C:0.999536712217215 34839 chr19 14580207 14580207 1 + C T SKCM 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG AGTGACCAGTGCGGGACACCCCTTTCTGGTGAACCTCTTCG < 41bp 1 0.0295476054855985 1 0.033863365650177 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580207 synonymous SNV . 0 25 hm5C_associated_SNPs_35102 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34839 DeepMRMD:1;iRNA_m5C:0.999536712157815 34840 chr15 72057427 72057427 1 + C T SKCM 72057443 + 72057423 72057463 41 ACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTCCTG ACACTTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTCCTG < 41bp 1 0.0279361405258429 1 0.0221783220767975 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control THSD4 ENSG00000187720 CDS Human protein_coding chr15:72057443 chr15:72057427 synonymous SNV . 0 5 hm5C_associated_SNPs_35103 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34840 DeepMRMD:1;iRNA_m5C:0.999536712157815 34841 chr16 19460909 19460909 1 + G A SKCM 19460903 + 19460883 19460923 41 TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGT TGAAAGTGGTCCTGTCCATGCTTATGAAAACCCACCATTGT < 41bp 1 0.140911080303715 1 0.113678753376007 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMC5 ENSG00000103534 CDS Human protein_coding chr16:19460903 chr16:19460909 nonsynonymous SNV 0.008 0 27 hm5C_associated_SNPs_35104 0 0 0 0 2 cytosol 1 0.500231666866128 1 0.999536666267745 hm5C_site_34841 DeepMRMD:1;iRNA_m5C:0.999536666267745 34842 chr11 2608822 2608822 1 + C T SKCM 2608838 + 2608818 2608858 41 GCTGCCGAGAACCCCGACTCCTCCACCTGGAAGATCTACAT GCTGTCGAGAACCCCGACTCCTCCACCTGGAAGATCTACAT < 41bp 1 0.601175606658349 1 0.919647097587585 experiment 0.797648786683303 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2608838 chr11:2608822 nonsynonymous SNV 0.767 2 5 hm5C_associated_SNPs_35105 0 0 0 0 1 Nucleus 1 0.500231647635614 0.16070580482483 0.999536704728771 hm5C_site_34842 DeepMRMD:0.16070580482483;iRNA_m5C:0.999536704728771 34843 chr15 76630250 76630250 1 + G A SKCM 76630260 + 76630240 76630280 41 GTACCTGGACGAGACGTGCACGTGCTTCGTGAGAGACGGGA GTACCTGGACAAGACGTGCACGTGCTTCGTGAGAGACGGGA < 41bp 1 0.289568883530362 1 0.365214228630066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630260 chr15:76630250 nonsynonymous SNV 0.999 5 11 hm5C_associated_SNPs_35106 0 0 1 0 1 Cytosol 1 0.500231534228753 1 0.999536931542494 hm5C_site_34843 DeepMRMD:1;iRNA_m5C:0.999536931542494 34844 chr7 101960916 101960916 1 + G A SKCM 101960919 + 101960899 101960939 41 CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTCGCA CCCACTGGAGTCAGGGGACTCGGCCGACATCACCCTTCGCA < 41bp 1 0.579027359807273 1 0.856052398681641 experiment 0.841945280385453 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101960919 chr7:101960916 nonsynonymous SNV 0.710 3 18 hm5C_associated_SNPs_35108 0 0 0 0 1 nucleoplasm 1 0.500231643921093 0.287895202636718 0.999536712157815 hm5C_site_34844 DeepMRMD:0.287895202636718;iRNA_m5C:0.999536712157815 34845 chr19 1036119 1036119 1 + C T SKCM 1036125 + 1036105 1036145 41 TCCCGGCCCCTTTCCCTCACCCAGGCCAAGACTAAGGGGCT TCCCGGCCCCTTTCTCTCACCCAGGCCAAGACTAAGGGGCT < 41bp 1 0.30148998535007 1 0.680326461791992 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1036125 chr19:1036119 synonymous SNV . 0 15 hm5C_associated_SNPs_35109 0 0 1 0 1 Ribosome 1 0.500231643921092 0.639347076416016 0.999536712157815 hm5C_site_34845 DeepMRMD:0.639347076416016;iRNA_m5C:0.999536712157815 34846 chr7 142458470 142458470 1 + C T SKCM 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTTCC < 41bp 1 0.397035036937022 1 0.269160687923431 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458470 synonymous SNV . 0 39 hm5C_associated_SNPs_35110 0 0 0 0 2 Cytosol 1 0.50023167103664 1 0.99953665792672 hm5C_site_34846 DeepMRMD:1;iRNA_m5C:0.99953665792672 34847 chr7 142458470 142458470 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCC < 41bp 1 0.212970427742207 1 0.227168291807175 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458470 synonymous SNV . 0 25 hm5C_associated_SNPs_35111 0 0 0 0 2 Cytosol 1 0.500231643885098 1 0.999536712229804 hm5C_site_34847 DeepMRMD:1;iRNA_m5C:0.999536712229804 34848 chr7 142458470 142458470 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.141031207613642 1 0.255501240491867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458470 synonymous SNV . 0 20 hm5C_associated_SNPs_35112 0 0 0 0 2 Cytosol 1 0.500231643921066 1 0.999536712157868 hm5C_site_34848 DeepMRMD:1;iRNA_m5C:0.999536712157868 34849 chr7 142458470 142458470 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.014830894059246 1 0.0522643029689789 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458470 synonymous SNV . 0 19 hm5C_associated_SNPs_35113 0 0 0 0 2 Cytosol 1 0.500231643913144 1 0.999536712173712 hm5C_site_34849 DeepMRMD:1;iRNA_m5C:0.999536712173712 34850 chr7 142458470 142458470 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.209090104636313 1 0.0655053853988647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458470 synonymous SNV . 0 18 hm5C_associated_SNPs_35114 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_34850 DeepMRMD:1;iRNA_m5C:0.999536712157817 34851 chr7 142458470 142458470 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.20167038722341 1 0.564801871776581 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458470 synonymous SNV . 0 15 hm5C_associated_SNPs_35115 0 0 0 0 2 Cytosol 1 0.500231643921092 0.870396256446838 0.999536712157815 hm5C_site_34851 DeepMRMD:0.870396256446838;iRNA_m5C:0.999536712157815 34852 chr7 142458470 142458470 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTTCCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.613327966262197 1 0.78506338596344 experiment 0.773344067475606 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458470 synonymous SNV . 0 14 hm5C_associated_SNPs_35116 0 0 0 0 2 Cytosol 1 0.500231643921092 0.42987322807312 0.999536712157815 hm5C_site_34852 DeepMRMD:0.42987322807312;iRNA_m5C:0.999536712157815 34853 chr7 142458470 142458470 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTTCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.0936878957692548 1 0.0482909083366394 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458470 synonymous SNV . 0 7 hm5C_associated_SNPs_35117 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34853 DeepMRMD:1;iRNA_m5C:0.999536712157815 34854 chr7 142458470 142458470 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTTCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.307024501975642 1 0.0516335070133209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458470 synonymous SNV . 0 6 hm5C_associated_SNPs_35118 0 0 0 0 2 Cytosol 1 0.50023164403524 1 0.99953671192952 hm5C_site_34854 DeepMRMD:1;iRNA_m5C:0.99953671192952 34855 chr8 48883187 48883187 1 + C T SKCM 48883170 + 48883150 48883190 41 ACATCTTGCTGTGTGGCGACCCTGGTACCAGCAAGTCCCAG ACATCTTGCTGTGTGGCGACCCTGGTACCAGCAAGTCTCAG < 41bp 1 0.259272285327016 1 0.256895840167999 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48883170 chr8:48883187 synonymous SNV . 0 38 hm5C_associated_SNPs_35120 0 0 1 0 0 Cytosol 1 0.500231643921478 1 0.999536712157045 hm5C_site_34855 DeepMRMD:1;iRNA_m5C:0.999536712157045 34856 chr6 107102665 107102665 1 + C T SKCM 107102660 + 107102640 107102680 41 GTCTCTTTGGTCCAAAGCTGCTGACCTCTTTGAGTCTGAGG GTCTCTTTGGTCCAAAGCTGCTGACTTCTTTGAGTCTGAGG < 41bp 1 0.270648913111303 1 0.139635473489761 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107102660 chr6:107102665 nonsynonymous SNV 0.998 1 26 hm5C_associated_SNPs_35121 0 0 0 0 1 Ribosome 1 0.500231641103949 1 0.999536717792102 hm5C_site_34856 DeepMRMD:1;iRNA_m5C:0.999536717792102 34857 chr7 91714867 91714867 1 + C T SKCM 91714852 + 91714832 91714872 41 TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCTCTATA < 41bp 1 0.211676071880755 1 0.0527969896793365 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714852 chr7:91714867 nonsynonymous SNV 0.393 0 36 hm5C_associated_SNPs_35123 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34857 DeepMRMD:1;iRNA_m5C:0.999536712157815 34858 chr7 91714867 91714867 1 + C T SKCM 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCATGCAGGTGCTTTCTCTCACTGAGTCTCTCTATAGTGA < 41bp 1 0.427052195037797 1 0.225132912397385 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714867 nonsynonymous SNV 0.393 0 32 hm5C_associated_SNPs_35124 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34858 DeepMRMD:1;iRNA_m5C:0.999536712157815 34859 chr7 91714867 91714867 1 + C T SKCM 91714864 + 91714844 91714884 41 GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG GGTGCTTTCTCTCACTGAGTCTCTCTATAGTGATGGAGAGG < 41bp 1 0.097063919993324 1 0.202914148569107 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714864 chr7:91714867 nonsynonymous SNV 0.393 0 24 hm5C_associated_SNPs_35125 0 0 0 0 1 Nucleus 1 0.500231643921461 1 0.999536712157077 hm5C_site_34859 DeepMRMD:1;iRNA_m5C:0.999536712157077 34860 chr7 91714867 91714867 1 + C T SKCM 91714868 + 91714848 91714888 41 CTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACCA CTTTCTCTCACTGAGTCTCTCTATAGTGATGGAGAGGACCA < 41bp 1 0.292040347001237 1 0.382630735635757 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714868 chr7:91714867 nonsynonymous SNV 0.393 0 20 hm5C_associated_SNPs_35126 0 0 0 0 1 Nucleus 1 0.500231644411359 1 0.999536711177282 hm5C_site_34860 DeepMRMD:1;iRNA_m5C:0.999536711177282 34861 chr17 6920628 6920628 1 + C T SKCM 6920637 + 6920617 6920657 41 GATCCTCCTCTCCTCTCCTGCTGAGCCTTCCACCTCTGACC GATCCTCCTCTTCTCTCCTGCTGAGCCTTCCACCTCTGACC < 41bp 1 0.458112273345424 1 0.210938632488251 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6920637 chr17:6920628 synonymous SNV . 0 12 hm5C_associated_SNPs_35127 0 0 1 2 2 nucleus 1 0.500231643921091 1 0.999536712157819 hm5C_site_34861 DeepMRMD:1;iRNA_m5C:0.999536712157819 34862 chr12 69651668 69651668 1 + C T SKCM 69651667 + 69651647 69651687 41 GGCCAGCAGGACCAGGAGGGCCACCCCCACCTTTTCCAGGT GGCCAGCAGGACCAGGAGGGCTACCCCCACCTTTTCCAGGT < 41bp 1 0.354202429574833 1 0.209392428398132 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69651667 chr12:69651668 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_35128 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34862 DeepMRMD:1;iRNA_m5C:0.999536712157815 34863 chr7 101960915 101960915 1 + G A SKCM 101960919 + 101960899 101960939 41 CCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTCGCA CCCACTGGAGTCAGGGAGCTCGGCCGACATCACCCTTCGCA < 41bp 1 0.536592165711115 1 0.710935473442078 experiment 0.926815668577769 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101960919 chr7:101960915 nonsynonymous SNV 0.846 3 17 hm5C_associated_SNPs_35129 0 0 0 0 1 nucleoplasm 1 0.500231643921092 0.578129053115844 0.999536712157815 hm5C_site_34863 DeepMRMD:0.578129053115844;iRNA_m5C:0.999536712157815 34864 chr19 50906833 50906833 1 + C T SKCM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACCTCATTTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.078237191910981 1 0.197129189968109 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906833 synonymous SNV . 0 11 hm5C_associated_SNPs_35130 0 0 1 0 2 Nucleus 1 0.500231643921077 1 0.999536712157845 hm5C_site_34864 DeepMRMD:1;iRNA_m5C:0.999536712157845 34865 chr3 178947158 178947158 1 + G A SKCM 178947150 + 178947130 178947170 41 ACTATTATGCAAATTCAGTGCAAAGGCGGCTTGAAAGGTGC ACTATTATGCAAATTCAGTGCAAAGGCGACTTGAAAGGTGC < 41bp 1 0.444707284571477 1 0.331183910369873 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947150 chr3:178947158 nonsynonymous SNV 0.979 4 29 hm5C_associated_SNPs_35132 0 0 0 0 2 Ribosome 1 0.500231643943564 1 0.999536712112872 hm5C_site_34865 DeepMRMD:1;iRNA_m5C:0.999536712112872 34866 chr5 147585614 147585614 1 + G A SKCM 147585619 + 147585599 147585639 41 GTGTCTTCAGTCAGGGAGGACAGGTCAGTGCCTATTTTTAT GTGTCTTCAGTCAGGAAGGACAGGTCAGTGCCTATTTTTAT < 41bp 1 0.578263817564988 1 0.356299817562103 experiment 0.843472364870025 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPINK6 ENSG00000178172 CDS Human protein_coding chr5:147585619 chr5:147585614 nonsynonymous SNV 0.834 1 16 hm5C_associated_SNPs_35133 0 0 0 0 2 unknown 1 0.50023164392037 1 0.999536712159259 hm5C_site_34866 DeepMRMD:1;iRNA_m5C:0.999536712159259 34867 chr14 72152246 72152246 1 + C T SKCM 72152244 + 72152224 72152264 41 CAGGTGCAGAGTCCCATGACCTCGCGGCTGAATGCTGGAAA CAGGTGCAGAGTCCCATGACCTTGCGGCTGAATGCTGGAAA < 41bp 1 0.212292723895097 1 0.102172553539276 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152244 chr14:72152246 nonsynonymous SNV 0.894 1 23 hm5C_associated_SNPs_35134 0 0 1 0 0 Nucleus 1 0.500231643923559 1 0.999536712152881 hm5C_site_34867 DeepMRMD:1;iRNA_m5C:0.999536712152881 34868 chr1 22835087 22835087 1 + T C SKCM 22835072 + 22835052 22835092 41 TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGTTCTAG TGGTTCAGGTGGTTTCAATTCTCTGATATCAGCAGCTCTAG < 41bp 1 0.501215285675547 1 0.737247288227081 experiment 0.997569428648906 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22835072 chr1:22835087 nonsynonymous SNV 0.998 0 36 hm5C_associated_SNPs_35135 0 0 1 0 1 Nucleus 1 0.500231643923779 0.525505423545838 0.999536712152443 hm5C_site_34868 DeepMRMD:0.525505423545838;iRNA_m5C:0.999536712152443 34869 chr7 142460770 142460770 1 + T G SKCM 142460757 + 142460737 142460777 41 GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCGCCTGGGG < 41bp 1 0.298126827868593 1 0.622443318367004 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460757 chr7:142460770 nonsynonymous SNV 0.197 5 34 hm5C_associated_SNPs_35136 0 0 0 0 0 Cytosol 1 0.500231568249181 0.755113363265992 0.999536863501638 hm5C_site_34869 DeepMRMD:0.755113363265992;iRNA_m5C:0.999536863501638 34870 chr7 142460770 142460770 1 + T G SKCM 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCGCCTGGGGT < 41bp 1 0.448829017955892 1 0.358664214611053 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460770 nonsynonymous SNV 0.197 5 33 hm5C_associated_SNPs_35137 0 0 0 0 0 Cytosol 1 0.500231674695549 1 0.999536650608903 hm5C_site_34870 DeepMRMD:1;iRNA_m5C:0.999536650608903 34871 chr7 142460770 142460770 1 + T G SKCM 142460769 + 142460749 142460789 41 GGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC GGACAGCTCCAAGGAGTTGTCGCCTGGGGTGATGGCTGTGC < 41bp 1 0.691597374671214 1 0.738106489181519 experiment 0.616805250657572 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460769 chr7:142460770 nonsynonymous SNV 0.197 5 22 hm5C_associated_SNPs_35138 0 0 0 0 0 Cytosol 1 0.500231643920997 0.523787021636962 0.999536712158007 hm5C_site_34871 DeepMRMD:0.523787021636962;iRNA_m5C:0.999536712158007 34872 chr7 142460770 142460770 1 + T G SKCM 142460771 + 142460751 142460791 41 ACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC ACAGCTCCAAGGAGTTGTCGCCTGGGGTGATGGCTGTGCCC < 41bp 1 0.292016576003796 1 0.741614103317261 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460771 chr7:142460770 nonsynonymous SNV 0.197 5 20 hm5C_associated_SNPs_35139 0 0 0 0 0 Cytosol 1 0.500231643919615 0.516771793365478 0.99953671216077 hm5C_site_34872 DeepMRMD:0.516771793365478;iRNA_m5C:0.99953671216077 34873 chr7 142460770 142460770 1 + T G SKCM 142460784 + 142460764 142460804 41 GTTGTCTCCTGGGGTGATGGCTGTGCCCAGAAGAACAAGCC GTTGTCGCCTGGGGTGATGGCTGTGCCCAGAAGAACAAGCC < 41bp 1 0.423064885073285 1 0.501458942890167 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460784 chr7:142460770 nonsynonymous SNV 0.197 5 7 hm5C_associated_SNPs_35141 0 0 0 0 0 Cytosol 1 0.500231643916866 0.997082114219666 0.999536712166268 hm5C_site_34873 DeepMRMD:0.997082114219666;iRNA_m5C:0.999536712166268 34874 chr2 54845318 54845318 1 + T C SKCM 54845324 + 54845304 54845344 41 GCCTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGG GCCTCACTAAACTGCTGGACCCCGAAGGTAGGGACTCAAGG < 41bp 1 0.289048580415258 1 0.108641266822815 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845324 chr2:54845318 synonymous SNV . 0 15 hm5C_associated_SNPs_35142 0 0 1 0 1 Nucleus 1 0.500231398922763 1 0.999537202154474 hm5C_site_34874 DeepMRMD:1;iRNA_m5C:0.999537202154474 34875 chr2 54845318 54845318 1 + T C SKCM 54845325 + 54845305 54845345 41 CCTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGGG CCTCACTAAACTGCTGGACCCCGAAGGTAGGGACTCAAGGG < 41bp 1 0.285666142491531 1 0.220187783241272 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845325 chr2:54845318 synonymous SNV . 0 14 hm5C_associated_SNPs_35143 0 0 1 0 1 Nucleus 1 0.500231643921101 1 0.999536712157798 hm5C_site_34875 DeepMRMD:1;iRNA_m5C:0.999536712157798 34876 chr2 54845318 54845318 1 + T C SKCM 54845326 + 54845306 54845346 41 CTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGGGA CTCACTAAACTGCTGGACCCCGAAGGTAGGGACTCAAGGGA < 41bp 1 0.320198572166899 1 0.758610248565674 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845326 chr2:54845318 synonymous SNV . 0 13 hm5C_associated_SNPs_35144 0 0 1 0 1 Nucleus 1 0.500231643878475 0.482779502868652 0.999536712243049 hm5C_site_34876 DeepMRMD:0.482779502868652;iRNA_m5C:0.999536712243049 34877 chr17 54912440 54912440 1 + A C SKCM 54912447 + 54912427 54912467 41 GGGCTCCGCGTGGACGAGGGCTGCCTCAGGAAGGCCGACAA GGGCTCCGCGTGGCCGAGGGCTGCCTCAGGAAGGCCGACAA < 41bp 1 0.685604590902694 1 0.405606150627136 experiment 0.628790818194612 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54912447 chr17:54912440 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_35145 0 0 1 0 0 Ribosome 1 0.500231643655686 1 0.999536712688628 hm5C_site_34877 DeepMRMD:1;iRNA_m5C:0.999536712688628 34878 chr7 142459713 142459713 1 + C T SKCM 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACT < 41bp 1 0.524586088819209 1 0.0456717610359192 experiment 0.950827822361582 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459713 nonsynonymous SNV 0.015 3 41 hm5C_associated_SNPs_35146 0 0 0 0 1 Cytosol 1 0.500231637225995 1 0.99953672554801 hm5C_site_34878 DeepMRMD:1;iRNA_m5C:0.99953672554801 34879 chr7 142459713 142459713 1 + C T SKCM 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACTCCC < 41bp 1 0.338557781257247 1 0.352238684892654 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459713 nonsynonymous SNV 0.015 3 38 hm5C_associated_SNPs_35147 0 0 0 0 1 Cytosol 1 0.500231644203619 1 0.999536711592762 hm5C_site_34879 DeepMRMD:1;iRNA_m5C:0.999536711592762 34880 chr7 142459713 142459713 1 + C T SKCM 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATCCGCCACTCCCAATACGA < 41bp 1 0.276697361724713 1 0.180778592824936 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459713 nonsynonymous SNV 0.015 3 31 hm5C_associated_SNPs_35148 0 0 0 0 1 Cytosol 1 0.500182644558087 1 0.999634710883826 hm5C_site_34880 DeepMRMD:1;iRNA_m5C:0.999634710883826 34881 chr7 142459713 142459713 1 + C T SKCM 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATCCGCCACTCCCAATACGACAG < 41bp 1 0.275382125976517 1 0.231544643640518 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459713 nonsynonymous SNV 0.015 3 28 hm5C_associated_SNPs_35149 0 0 0 0 1 Cytosol 1 0.500231637569433 1 0.999536724861133 hm5C_site_34881 DeepMRMD:1;iRNA_m5C:0.999536724861133 34882 chr7 142459713 142459713 1 + C T SKCM 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATCCGCCACTCCCAATACGACAGGAA < 41bp 1 0.139146540476783 1 0.0627893209457397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459713 nonsynonymous SNV 0.015 3 25 hm5C_associated_SNPs_35150 0 0 0 0 1 Cytosol 1 0.500231643920305 1 0.999536712159389 hm5C_site_34882 DeepMRMD:1;iRNA_m5C:0.999536712159389 34883 chr7 142459713 142459713 1 + C T SKCM 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATCCGCCACTCCCAATACGACAGGAAG < 41bp 1 0.0957930705074763 1 0.232266634702682 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459713 nonsynonymous SNV 0.015 3 24 hm5C_associated_SNPs_35151 0 0 0 0 1 Cytosol 1 0.500231654488958 1 0.999536691022083 hm5C_site_34883 DeepMRMD:1;iRNA_m5C:0.999536691022083 34884 chr7 142459713 142459713 1 + C T SKCM 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATCCGCCACTCCCAATACGACAGGAAGAC < 41bp 1 0.300221793700304 1 0.254563629627228 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459713 nonsynonymous SNV 0.015 3 22 hm5C_associated_SNPs_35152 0 0 0 0 1 Cytosol 1 0.500231644291606 1 0.999536711416788 hm5C_site_34884 DeepMRMD:1;iRNA_m5C:0.999536711416788 34885 chr7 142459713 142459713 1 + C T SKCM 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATCCGCCACTCCCAATACGACAGGAAGACTC < 41bp 1 0.548862336954482 1 0.178159445524216 experiment 0.902275326091036 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459713 nonsynonymous SNV 0.015 3 20 hm5C_associated_SNPs_35153 0 0 0 0 1 Cytosol 1 0.500231643925598 1 0.999536712148804 hm5C_site_34885 DeepMRMD:1;iRNA_m5C:0.999536712148804 34886 chr7 142459713 142459713 1 + C T SKCM 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATCCGCCACTCCCAATACGACAGGAAGACTCT < 41bp 1 0.238306207294057 1 0.229555696249008 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459713 nonsynonymous SNV 0.015 3 19 hm5C_associated_SNPs_35154 0 0 0 0 1 Cytosol 1 0.500231672675913 1 0.999536654648175 hm5C_site_34886 DeepMRMD:1;iRNA_m5C:0.999536654648175 34887 chr7 142459713 142459713 1 + C T SKCM 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATCCGCCACTCCCAATACGACAGGAAGACTCTG < 41bp 1 0.532160160786156 1 0.0602854192256927 experiment 0.935679678427689 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459713 nonsynonymous SNV 0.015 3 18 hm5C_associated_SNPs_35155 0 0 0 0 1 Cytosol 1 0.500231662169573 1 0.999536675660855 hm5C_site_34887 DeepMRMD:1;iRNA_m5C:0.999536675660855 34888 chr7 142459713 142459713 1 + C T SKCM 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CTCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT < 41bp 1 0.488951137540677 1 0.269100666046143 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459713 nonsynonymous SNV 0.015 3 2 hm5C_associated_SNPs_35156 0 0 0 0 1 Cytosol 1 0.500231652115421 1 0.999536695769157 hm5C_site_34888 DeepMRMD:1;iRNA_m5C:0.999536695769157 34889 chr12 132546845 132546845 1 + C T SKCM 132546853 + 132546833 132546873 41 CCCCGGCACGGTCTTTGGTGCCCCAAGTGTCCCAAGGTAAA CCCCGGCACGGTTTTTGGTGCCCCAAGTGTCCCAAGGTAAA < 41bp 1 0.122433521395014 1 0.0963898897171021 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546853 chr12:132546845 nonsynonymous SNV 0.614 5 13 hm5C_associated_SNPs_35157 0 0 1 0 1 Cytosol 1 0.500231643915971 1 0.999536712168059 hm5C_site_34889 DeepMRMD:1;iRNA_m5C:0.999536712168059 34890 chr19 12924217 12924217 1 + C T SKCM 12924210 + 12924190 12924230 41 CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT CTACTTCCTCAATGAAGGGTCCCAAGCTCGTCCCCGTTCTT < 41bp 1 0.322105692593551 1 0.0826056897640228 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924210 chr19:12924217 synonymous SNV . 0 28 hm5C_associated_SNPs_35158 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34890 DeepMRMD:1;iRNA_m5C:0.999536712157815 34891 chr19 12924217 12924217 1 + C T SKCM 12924211 + 12924191 12924231 41 TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTC TACTTCCTCAATGAAGGGTCCCAAGCTCGTCCCCGTTCTTC < 41bp 1 0.135028641269365 1 0.0377197265625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924211 chr19:12924217 synonymous SNV . 0 27 hm5C_associated_SNPs_35159 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_34891 DeepMRMD:1;iRNA_m5C:0.999536712157814 34892 chr19 12924217 12924217 1 + C T SKCM 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCTCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG < 41bp 1 0.166333506100408 1 0.0951819717884064 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924217 synonymous SNV . 0 6 hm5C_associated_SNPs_35160 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34892 DeepMRMD:1;iRNA_m5C:0.999536712157815 34893 chr19 12924218 12924218 1 + C T SKCM 12924210 + 12924190 12924230 41 CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT CTACTTCCTCAATGAAGGGTCCCAAGCCTGTCCCCGTTCTT < 41bp 1 0.321175424484864 1 0.0702271163463593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924210 chr19:12924218 nonsynonymous SNV 0.002 1 29 hm5C_associated_SNPs_35161 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34893 DeepMRMD:1;iRNA_m5C:0.999536712157815 34894 chr19 12924218 12924218 1 + C T SKCM 12924211 + 12924191 12924231 41 TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTC TACTTCCTCAATGAAGGGTCCCAAGCCTGTCCCCGTTCTTC < 41bp 1 0.0980488581060191 1 0.0597066879272461 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924211 chr19:12924218 nonsynonymous SNV 0.002 1 28 hm5C_associated_SNPs_35162 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34894 DeepMRMD:1;iRNA_m5C:0.999536712157815 34895 chr19 12924218 12924218 1 + C T SKCM 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCCTGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG < 41bp 1 0.145706753870154 1 0.0981582701206207 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924218 nonsynonymous SNV 0.002 1 7 hm5C_associated_SNPs_35163 0 0 1 0 1 Ribosome 1 0.500231643921085 1 0.999536712157831 hm5C_site_34895 DeepMRMD:1;iRNA_m5C:0.999536712157831 34896 chr16 1550438 1550438 1 + C T SKCM 1550440 + 1550420 1550460 41 CACGTCAGCAAGGCTGTCCTCATCTGCCTGGCGCAACTCGG CACGTCAGCAAGGCTGTCTTCATCTGCCTGGCGCAACTCGG < 41bp 1 0.308625637103377 1 0.0632083117961884 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550440 chr16:1550438 nonsynonymous SNV 0.164 4 19 hm5C_associated_SNPs_35164 0 0 1 0 2 Cytosol 1 0.500231643924793 1 0.999536712150413 hm5C_site_34896 DeepMRMD:1;iRNA_m5C:0.999536712150413 34897 chr6 31594924 31594924 1 + C T SKCM 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACCTCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.300570782291602 1 0.119478106498718 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594924 synonymous SNV . 0 6 hm5C_associated_SNPs_35165 0 0 1 0 1 Ribosome 1 0.500231643922034 1 0.999536712155932 hm5C_site_34897 DeepMRMD:1;iRNA_m5C:0.999536712155932 34898 chr6 31594924 31594924 1 + C T SKCM 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACCTCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.284828456763857 1 0.156838983297348 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594924 synonymous SNV . 0 5 hm5C_associated_SNPs_35166 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34898 DeepMRMD:1;iRNA_m5C:0.999536712157815 34899 chr6 31594924 31594924 1 + C T SKCM 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACCTCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.337706823282104 1 0.16583713889122 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594924 synonymous SNV . 0 4 hm5C_associated_SNPs_35167 0 0 1 0 1 Ribosome 1 0.500231643929573 1 0.999536712140854 hm5C_site_34899 DeepMRMD:1;iRNA_m5C:0.999536712140854 34900 chr6 31594924 31594924 1 + C T SKCM 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CCTCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC < 41bp 1 0.587103631491606 1 0.537136375904083 experiment 0.825792737016788 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594924 synonymous SNV . 0 3 hm5C_associated_SNPs_35168 0 0 1 0 1 Ribosome 1 0.500231567671212 0.925727248191834 0.999536864657576 hm5C_site_34900 DeepMRMD:0.925727248191834;iRNA_m5C:0.999536864657576 34901 chr4 79173594 79173594 1 + C T SKCM 79173606 + 79173586 79173626 41 CTTGCAATCATGGGGAAGTCCGATGTACCCCCCAACCATGC CTTGCAATTATGGGGAAGTCCGATGTACCCCCCAACCATGC < 41bp 1 0.197916737551106 1 0.541032135486603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79173606 chr4:79173594 nonsynonymous SNV 0.043 0 9 hm5C_associated_SNPs_35169 0 0 1 0 1 Nucleus 1 0.500231643921092 0.917935729026794 0.999536712157815 hm5C_site_34901 DeepMRMD:0.917935729026794;iRNA_m5C:0.999536712157815 34902 chr7 154738110 154738110 1 + C T SKCM 154738116 - 154738096 154738136 41 GATGTTCACAATGCAGAGTTCGTTCTGACTGGAGTGCTCAC GATGTTCACAATGCAGAGTTCGTTCTAACTGGAGTGCTCAC < 41bp 1 0.0546614663399854 1 0.0356373190879822 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154738116 chr7:154738110 synonymous SNV . 0 27 hm5C_associated_SNPs_35170 0 0 1 0 1 Cytosol 1 0.500231639828528 1 0.999536720342943 hm5C_site_34902 DeepMRMD:1;iRNA_m5C:0.999536720342943 34903 chr17 37681082 37681082 1 + C A SKCM 37681077 + 37681057 37681097 41 ACTGAGCCTGTGAAGAACAGCAGCCCAGCACCACCTCAGCC ACTGAGCCTGTGAAGAACAGCAGCCAAGCACCACCTCAGCC < 41bp 1 0.422626183029779 1 0.325722634792328 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37681077 chr17:37681082 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_35171 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34903 DeepMRMD:1;iRNA_m5C:0.999536712157815 34904 chr6 31594925 31594925 1 + C T SKCM 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACCCTCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.288411007675472 1 0.0872040390968323 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594925 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_35172 0 0 1 0 1 Ribosome 1 0.500231643998535 1 0.99953671200293 hm5C_site_34904 DeepMRMD:1;iRNA_m5C:0.99953671200293 34905 chr6 31594925 31594925 1 + C T SKCM 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACCCTCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.283754846559995 1 0.1861552298069 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594925 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_35173 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34905 DeepMRMD:1;iRNA_m5C:0.999536712157815 34906 chr6 31594925 31594925 1 + C T SKCM 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACCCTCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.342050213502506 1 0.2342449426651 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594925 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_35174 0 0 1 0 1 Ribosome 1 0.500231643972081 1 0.999536712055839 hm5C_site_34906 DeepMRMD:1;iRNA_m5C:0.999536712055839 34907 chr6 31594925 31594925 1 + C T SKCM 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CCCTCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC < 41bp 1 0.582532168938697 1 0.527479767799377 experiment 0.834935662122605 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594925 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_35175 0 0 1 0 1 Ribosome 1 0.500231616696646 0.945040464401246 0.999536766606708 hm5C_site_34907 DeepMRMD:0.945040464401246;iRNA_m5C:0.999536766606708 34908 chr10 94822677 94822677 1 + G A SKCM 94822663 + 94822643 94822683 41 GGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCCGG GGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTAGCCCGG < 41bp 1 0.679410055098269 1 0.593871891498566 experiment 0.641179889803461 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822663 chr10:94822677 synonymous SNV . 0 35 hm5C_associated_SNPs_35177 0 0 0 0 1 exosome 1 0.500231643896742 0.812256217002868 0.999536712206516 hm5C_site_34908 DeepMRMD:0.812256217002868;iRNA_m5C:0.999536712206516 34909 chr1 60302572 60302572 1 + C T SKCM 60302568 + 60302548 60302588 41 ATGAGTAAAGAAATATTGAGCTCTCCTCCAAATGATGCTGT ATGAGTAAAGAAATATTGAGCTCTTCTCCAAATGATGCTGT < 41bp 1 0.0936986347478828 1 0.0472326278686523 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60302568 chr1:60302572 nonsynonymous SNV 0.265 0 25 hm5C_associated_SNPs_35178 0 0 1 0 2 cytosol 1 0.500231643877637 1 0.999536712244725 hm5C_site_34909 DeepMRMD:1;iRNA_m5C:0.999536712244725 34910 chr6 130381225 130381225 1 + G A SKCM 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAAGTTGGCATAAAATTAGAAGGCGTGGA < 41bp 1 0.288275317685485 1 0.272339701652527 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381225 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_35179 0 0 1 0 2 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_34910 DeepMRMD:1;iRNA_m5C:0.999536712157815 34911 chr2 231931703 231931703 1 + T A SKCM 231931688 + 231931668 231931708 41 TGCCTGAAGGAGAAAAAAAACCAATTGACCAGAGATTGGAA TGCCTGAAGGAGAAAAAAAACCAATTGACCAGAGAATGGAA < 41bp 1 0.191934711963603 1 0.182340443134308 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931688 chr2:231931703 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_35180 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34911 DeepMRMD:1;iRNA_m5C:0.999536712157815 34912 chr2 231931703 231931703 1 + T A SKCM 231931696 + 231931676 231931716 41 GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATCGT GGAGAAAAAAAACCAATTGACCAGAGAATGGAAGGCATCGT < 41bp 1 0.599578721612009 1 0.0880196690559387 experiment 0.800842556775982 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931696 chr2:231931703 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_35181 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_34912 DeepMRMD:1;iRNA_m5C:0.999536712157816 34913 chr7 128407644 128407644 1 + C T SKCM 128407640 + 128407620 128407660 41 GAAGAGACCAAAGACTGGATCCTTCCCTCAGACTATGATCA GAAGAGACCAAAGACTGGATCCTTTCCTCAGACTATGATCA < 41bp 1 0.0293083980664873 1 0.0195875465869904 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407640 chr7:128407644 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_35182 0 0 1 0 1 Ribosome 1 0.500231640903811 1 0.999536718192379 hm5C_site_34913 DeepMRMD:1;iRNA_m5C:0.999536718192379 34914 chr7 128407644 128407644 1 + C T SKCM 128407641 + 128407621 128407661 41 AAGAGACCAAAGACTGGATCCTTCCCTCAGACTATGATCAT AAGAGACCAAAGACTGGATCCTTTCCTCAGACTATGATCAT < 41bp 1 0.0704253815872425 1 0.0285425782203674 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CALU ENSG00000128595 CDS Human protein_coding chr7:128407641 chr7:128407644 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_35183 0 0 1 0 1 Ribosome 1 0.500231655570928 1 0.999536688858145 hm5C_site_34914 DeepMRMD:1;iRNA_m5C:0.999536688858145 34915 chr10 94822678 94822678 1 + G A SKCM 94822663 + 94822643 94822683 41 GGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGGCCCGG GGTTGCGGCTGGACGAGGCGCAGTGCGCCACGCTGACCCGG < 41bp 1 0.685573762219059 1 0.531094610691071 experiment 0.628852475561882 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822663 chr10:94822678 nonsynonymous SNV 0.858 0 36 hm5C_associated_SNPs_35185 0 0 0 0 1 exosome 1 0.500231611462588 0.937810778617858 0.999536777074824 hm5C_site_34915 DeepMRMD:0.937810778617858;iRNA_m5C:0.999536777074824 34916 chr19 4222714 4222714 1 + G A SKCM 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAAGAGCAGCCGGCCGCCCTCGCCACC < 41bp 1 0.342323604168743 1 0.150063276290894 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222714 synonymous SNV . 0 17 hm5C_associated_SNPs_35186 0 0 0 0 2 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_34916 DeepMRMD:1;iRNA_m5C:0.999536712157815 34917 chr11 61897297 61897297 1 + C A SKCM 61897299 + 61897279 61897319 41 AGCCAGCTGAGCTCCCGACGCCTCCGCAGCAAGGACAGTGT AGCCAGCTGAGCTCCCGAAGCCTCCGCAGCAAGGACAGTGT < 41bp 1 0.0506371378093571 1 0.343448281288147 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897299 chr11:61897297 nonsynonymous SNV 0.797 0 19 hm5C_associated_SNPs_35187 0 0 1 0 1 chromatin 1 0.500231643897916 1 0.999536712204168 hm5C_site_34917 DeepMRMD:1;iRNA_m5C:0.999536712204168 34918 chr7 142459645 142459645 1 + G A SKCM 142459625 + 142459605 142459645 41 ATGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGG ATGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGA < 41bp 1 0.510275643893748 1 0.395811378955841 experiment 0.979448712212505 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459625 chr7:142459645 nonsynonymous SNV 0.992 5 41 hm5C_associated_SNPs_35189 0 0 0 0 1 Cytosol 1 0.500231651608796 1 0.999536696782408 hm5C_site_34918 DeepMRMD:1;iRNA_m5C:0.999536696782408 34919 chr7 142459645 142459645 1 + G A SKCM 142459626 + 142459606 142459646 41 TGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGA TGCCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGAA < 41bp 1 0.336902498654467 1 0.370395481586456 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459626 chr7:142459645 nonsynonymous SNV 0.992 5 40 hm5C_associated_SNPs_35190 0 0 0 0 1 Cytosol 1 0.500231643921091 1 0.999536712157819 hm5C_site_34919 DeepMRMD:1;iRNA_m5C:0.999536712157819 34920 chr7 142459645 142459645 1 + G A SKCM 142459628 + 142459608 142459648 41 CCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGA CCTGCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGAAGA < 41bp 1 0.246339964974629 1 0.0950856506824493 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459628 chr7:142459645 nonsynonymous SNV 0.992 5 38 hm5C_associated_SNPs_35191 0 0 0 0 1 Cytosol 1 0.500231643921089 1 0.999536712157822 hm5C_site_34920 DeepMRMD:1;iRNA_m5C:0.999536712157822 34921 chr7 142459645 142459645 1 + G A SKCM 142459631 + 142459611 142459651 41 GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGGAGAGCA GCCCTGCCCATCAGCCGCATCCAGGTGAGACTGGAAGAGCA < 41bp 1 0.560908117690915 1 0.787490367889404 experiment 0.87818376461817 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459631 chr7:142459645 nonsynonymous SNV 0.992 5 35 hm5C_associated_SNPs_35192 0 0 0 0 1 Cytosol 1 0.500231428662471 0.425019264221192 0.999537142675059 hm5C_site_34921 DeepMRMD:0.425019264221192;iRNA_m5C:0.999537142675059 34922 chr7 142459645 142459645 1 + G A SKCM 142459655 + 142459635 142459675 41 GTGAGACTGGGAGAGCACAACATCGAAGTCCTGGAGGGGAA GTGAGACTGGAAGAGCACAACATCGAAGTCCTGGAGGGGAA < 41bp 1 0.678935277600182 1 0.129758179187775 experiment 0.642129444799636 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459655 chr7:142459645 nonsynonymous SNV 0.992 5 11 hm5C_associated_SNPs_35194 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34922 DeepMRMD:1;iRNA_m5C:0.999536712157815 34923 chr7 142459645 142459645 1 + G A SKCM 142459664 + 142459644 142459684 41 GGAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT GAAGAGCACAACATCGAAGTCCTGGAGGGGAATGAGCAGTT < 41bp 1 0.512011786228565 1 0.357793152332306 experiment 0.975976427542871 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459664 chr7:142459645 nonsynonymous SNV 0.992 5 2 hm5C_associated_SNPs_35196 0 0 0 0 1 Cytosol 1 0.500231643756662 1 0.999536712486676 hm5C_site_34923 DeepMRMD:1;iRNA_m5C:0.999536712486676 34924 chr21 46900420 46900420 1 + C T SKCM 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTCGGGGGCGATTTGGAGGCCCTGCGGGT < 41bp 1 0.0536451362664877 1 0.122714310884476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900420 synonymous SNV . 0 25 hm5C_associated_SNPs_35197 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34924 DeepMRMD:1;iRNA_m5C:0.999536712157815 34925 chr3 122419866 122419866 1 + C G SKCM 122419849 + 122419829 122419869 41 GACTTGGCACGGCTTCCTGTCGATGTGGTGGTGAATGCATC GACTTGGCACGGCTTCCTGTCGATGTGGTGGTGAATGGATC < 41bp 1 0.329790331505764 1 0.708049416542053 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARP14 ENSG00000173193 CDS Human protein_coding chr3:122419849 chr3:122419866 nonsynonymous SNV 0.003 2 38 hm5C_associated_SNPs_35198 0 0 0 0 0 Nucleus 1 0.500231643923434 0.583901166915894 0.999536712153133 hm5C_site_34925 DeepMRMD:0.583901166915894;iRNA_m5C:0.999536712153133 34926 chr3 142408621 142408621 1 + G A SKCM 142408604 + 142408584 142408624 41 CTAATTTGTTTAACACATACCCGTGCCTGCACAAGCCGAAT CTAATTTGTTTAACACATACCCGTGCCTGCACAAGCCAAAT < 41bp 1 0.125927028204854 1 0.0447201430797577 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142408604 chr3:142408621 synonymous SNV . 0 38 hm5C_associated_SNPs_35199 0 0 0 0 1 Nucleus 1 0.50023164409591 1 0.99953671180818 hm5C_site_34926 DeepMRMD:1;iRNA_m5C:0.99953671180818 34927 chr6 21198298 21198298 1 + C T SKCM 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TTCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT < 41bp 1 0.0402328315495758 1 0.112194746732712 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198298 nonsynonymous SNV 0.999 3 2 hm5C_associated_SNPs_35200 0 0 0 0 2 Nucleus 1 0.5002316434784 1 0.9995367130432 hm5C_site_34927 DeepMRMD:1;iRNA_m5C:0.9995367130432 34928 chr10 95660969 95660969 1 + G A SKCM 95660981 + 95660961 95661001 41 CTGTATTAGGAGAGTGGAGTCTGCCTTACTGTGGGTTGGAC CTGTATTAAGAGAGTGGAGTCTGCCTTACTGTGGGTTGGAC < 41bp 1 0.442916627290449 1 0.157601296901703 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC35G1 ENSG00000176273 CDS Human protein_coding chr10:95660981 chr10:95660969 nonsynonymous SNV 0.718 2 9 hm5C_associated_SNPs_35201 0 0 1 0 0 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_34928 DeepMRMD:1;iRNA_m5C:0.999536712157814 34929 chr7 77256323 77256323 1 + C T SKCM 77256319 + 77256299 77256339 41 AGTTTTGAGATTAAGAAGGTCCCTCTCCAAGAGGGACCAAA AGTTTTGAGATTAAGAAGGTCCCTTTCCAAGAGGGACCAAA < 41bp 1 0.0473449397077937 1 0.0139486491680145 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256319 chr7:77256323 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_35202 0 0 1 0 0 Ribosome 1 0.500231642916163 1 0.999536714167674 hm5C_site_34929 DeepMRMD:1;iRNA_m5C:0.999536714167674 34930 chr7 77256323 77256323 1 + C T SKCM 77256320 + 77256300 77256340 41 GTTTTGAGATTAAGAAGGTCCCTCTCCAAGAGGGACCAAAA GTTTTGAGATTAAGAAGGTCCCTTTCCAAGAGGGACCAAAA < 41bp 1 0.0136672540689479 1 0.0294181406497955 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256320 chr7:77256323 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_35203 0 0 1 0 0 Ribosome 1 0.500231643921182 1 0.999536712157637 hm5C_site_34930 DeepMRMD:1;iRNA_m5C:0.999536712157637 34931 chr7 77256323 77256323 1 + C T SKCM 77256321 + 77256301 77256341 41 TTTTGAGATTAAGAAGGTCCCTCTCCAAGAGGGACCAAAAA TTTTGAGATTAAGAAGGTCCCTTTCCAAGAGGGACCAAAAA < 41bp 1 0.0431789106087756 1 0.072371631860733 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256321 chr7:77256323 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_35204 0 0 1 0 0 Ribosome 1 0.500231643920555 1 0.999536712158891 hm5C_site_34931 DeepMRMD:1;iRNA_m5C:0.999536712158891 34932 chr7 77256323 77256323 1 + C T SKCM 77256335 + 77256315 77256355 41 AGGTCCCTCTCCAAGAGGGACCAAAAAGTTTTGATGGGAAC AGGTCCCTTTCCAAGAGGGACCAAAAAGTTTTGATGGGAAC < 41bp 1 0.100330982941904 1 0.393960326910019 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256335 chr7:77256323 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_35205 0 0 1 0 0 Ribosome 1 0.500231643921095 1 0.999536712157811 hm5C_site_34932 DeepMRMD:1;iRNA_m5C:0.999536712157811 34933 chr7 77256323 77256323 1 + C T SKCM 77256336 + 77256316 77256356 41 GGTCCCTCTCCAAGAGGGACCAAAAAGTTTTGATGGGAACA GGTCCCTTTCCAAGAGGGACCAAAAAGTTTTGATGGGAACA < 41bp 1 0.268499332388614 1 0.519036710262299 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256336 chr7:77256323 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_35206 0 0 1 0 0 Ribosome 1 0.500231643921092 0.961926579475402 0.999536712157815 hm5C_site_34933 DeepMRMD:0.961926579475402;iRNA_m5C:0.999536712157815 34934 chr3 14487283 14487283 1 + C T SKCM 14487265 + 14487245 14487285 41 TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTT TTTATTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTTTT < 41bp 1 0.199662200977918 1 0.356796115636826 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487265 chr3:14487283 synonymous SNV . 0 39 hm5C_associated_SNPs_35207 0 0 1 1 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34934 DeepMRMD:1;iRNA_m5C:0.999536712157815 34935 chr3 14487283 14487283 1 + C T SKCM 14487269 + 14487249 14487289 41 TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTCTTGGAG TTTTCCTGTTTGGGAGCGGCCTGCCTGTGTTTTTTTTGGAG < 41bp 1 0.304125549525585 1 0.267167538404465 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14487269 chr3:14487283 synonymous SNV . 0 35 hm5C_associated_SNPs_35208 0 0 1 1 2 Nucleus 1 0.500231643908191 1 0.999536712183618 hm5C_site_34935 DeepMRMD:1;iRNA_m5C:0.999536712183618 34936 chr16 5128005 5128005 1 + C T SKCM 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ATGAAGCTGGGCAGCATGCACTCTTCGTTCAGGGCCCGGTA < 41bp 1 0.438604017045412 1 0.0533750355243683 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5128005 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_35209 0 0 1 0 2 Ribosome 1 0.500231645318862 1 0.999536709362276 hm5C_site_34936 DeepMRMD:1;iRNA_m5C:0.999536709362276 34937 chr11 57577669 57577669 1 + G A SKCM 57577685 + 57577665 57577705 41 AAAAGAAGGATGGAAGAAATCAGACTTTCAGGTATAGTAAC AAAAAAAGGATGGAAGAAATCAGACTTTCAGGTATAGTAAC < 41bp 1 0.469553550030562 1 0.473852783441544 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57577685 chr11:57577669 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_35211 0 0 1 0 2 Nucleus 1 0.500231954311686 1 0.999536091376628 hm5C_site_34937 DeepMRMD:1;iRNA_m5C:0.999536091376628 34938 chr8 17406292 17406292 1 + G A SKCM 17406301 + 17406281 17406321 41 GTTTGTGAAAGGAAATGTGGCAAACTGGAAGATTAGTGAAG GTTTGTGAAAGAAAATGTGGCAAACTGGAAGATTAGTGAAG < 41bp 1 0.145982809824776 1 0.113377422094345 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17406301 chr8:17406292 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_35212 0 0 1 0 1 Ribosome 1 0.500231643921064 1 0.999536712157872 hm5C_site_34938 DeepMRMD:1;iRNA_m5C:0.999536712157872 34939 chr13 53216577 53216577 1 + C A SKCM 53216566 + 53216546 53216586 41 TATCTAAGATCTCTGGTGGACTTTTTCTGCCCGTGGACGCC TATCTAAGATCTCTGGTGGACTTTTTCTGCCAGTGGACGCC < 41bp 1 0.22101986659974 1 0.0374245941638947 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HNRNPA1L2 ENSG00000139675 UTR5 Human protein_coding chr13:53216566 chr13:53216577 . . 0 32 hm5C_associated_SNPs_35214 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_34939 DeepMRMD:1;iRNA_m5C:0.999536712157813 34940 chr12 67699410 67699410 1 + C T SKCM 67699418 + 67699398 67699438 41 AGGGGTTCCTATCCTTGCTTCATTTCTTAGAAAAAACCAGA AGGGGTTCCTATTCTTGCTTCATTTCTTAGAAAAAACCAGA < 41bp 1 0.0304504700375604 1 0.0965085327625275 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAND1 ENSG00000111530 CDS Human protein_coding chr12:67699418 chr12:67699410 synonymous SNV . 0 13 hm5C_associated_SNPs_35215 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34940 DeepMRMD:1;iRNA_m5C:0.999536712157815 34941 chr12 67699411 67699411 1 + C T SKCM 67699418 + 67699398 67699438 41 AGGGGTTCCTATCCTTGCTTCATTTCTTAGAAAAAACCAGA AGGGGTTCCTATCTTTGCTTCATTTCTTAGAAAAAACCAGA < 41bp 1 0.0300378905657878 1 0.0669116377830505 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CAND1 ENSG00000111530 CDS Human protein_coding chr12:67699418 chr12:67699411 nonsynonymous SNV 0.998 4 14 hm5C_associated_SNPs_35216 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_34941 DeepMRMD:1;iRNA_m5C:0.999536712157815 34942 chr1 44134855 44134855 1 + C T SKCM 44134847 + 44134827 44134867 41 AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCTG AGGAGGTGAGTCAGAGTGAGCTCTTCCCTAAGGAGGATCTG < 41bp 1 0.240252098693413 1 0.0237171947956085 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134847 chr1:44134855 synonymous SNV . 0 29 hm5C_associated_SNPs_35217 0 0 1 0 1 Nucleus 1 0.500231643913786 1 0.999536712172428 hm5C_site_34942 DeepMRMD:1;iRNA_m5C:0.999536712172428 34943 chr1 44134854 44134854 1 + C T SKCM 44134847 + 44134827 44134867 41 AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCTG AGGAGGTGAGTCAGAGTGAGCTCTTCCTCAAGGAGGATCTG < 41bp 1 0.239238583107895 1 0.018243283033371 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134847 chr1:44134854 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_35218 0 0 1 0 1 Nucleus 1 0.50023164391717 1 0.99953671216566 hm5C_site_34943 DeepMRMD:1;iRNA_m5C:0.99953671216566 34944 chr11 64803007 64803007 1 + C T SKCM 64803026 + 64803006 64803046 41 TCCAGCCCTGCCCAGGAGGCCCTGGATCTCCTCTTTAACTG TTCAGCCCTGCCCAGGAGGCCCTGGATCTCCTCTTTAACTG < 41bp 1 0.262798098200237 1 0.0799706876277924 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64803026 chr11:64803007 nonsynonymous SNV 0.992 1 2 hm5C_associated_SNPs_35219 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34944 DeepMRMD:1;iRNA_m5C:0.999536712157815 34945 chr12 111744796 111744796 1 + C T SKCM 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATTC < 41bp 1 0.0350363186703308 1 0.064323753118515 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744796 synonymous SNV . 0 40 hm5C_associated_SNPs_35220 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34945 DeepMRMD:1;iRNA_m5C:0.999536712157815 34946 chr12 111744796 111744796 1 + C T SKCM 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATTCT < 41bp 1 0.528696578486809 1 0.967646360397339 experiment 0.942606843026382 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744796 synonymous SNV . 0 39 hm5C_associated_SNPs_35221 0 0 0 0 1 exosome 1 0.500231643920947 0.064707279205322 0.999536712158105 hm5C_site_34946 DeepMRMD:0.064707279205322;iRNA_m5C:0.999536712158105 34947 chr12 111744796 111744796 1 + C T SKCM 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATTCTGC < 41bp 1 0.229798034831092 1 0.81638491153717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744796 synonymous SNV . 0 37 hm5C_associated_SNPs_35222 0 0 0 0 1 exosome 1 0.500231643920229 0.36723017692566 0.999536712159542 hm5C_site_34947 DeepMRMD:0.36723017692566;iRNA_m5C:0.999536712159542 34948 chr12 111744796 111744796 1 + C T SKCM 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATTCTGCG < 41bp 1 0.348940745994565 1 0.727977156639099 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744796 synonymous SNV . 0 36 hm5C_associated_SNPs_35223 0 0 0 0 1 exosome 1 0.500231643921093 0.544045686721802 0.999536712157815 hm5C_site_34948 DeepMRMD:0.544045686721802;iRNA_m5C:0.999536712157815 34949 chr16 30723167 30723167 1 + G A SKCM 30723169 + 30723149 30723189 41 CCTTTAGACTCTGTGGAGGACCGGAGTGAGGATGAGGAAGA CCTTTAGACTCTGTGGAGAACCGGAGTGAGGATGAGGAAGA < 41bp 1 0.533950097323714 1 0.430123656988144 experiment 0.932099805352571 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30723169 chr16:30723167 nonsynonymous SNV 0.895 1 19 hm5C_associated_SNPs_35225 0 0 1 0 1 Ribosome 1 0.500231643921022 1 0.999536712157956 hm5C_site_34949 DeepMRMD:1;iRNA_m5C:0.999536712157956 34950 chr12 2906432 2906432 1 + C T SKCM 2906431 + 2906411 2906451 41 GGATCGCAAGGACAAATTCTCCTTTGACCTGGGAAAAGGTA GGATCGCAAGGACAAATTCTCTTTTGACCTGGGAAAAGGTA < 41bp 1 0.111687795684597 1 0.0269874632358551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2906431 chr12:2906432 synonymous SNV . 0 22 hm5C_associated_SNPs_35226 0 0 1 0 1 Ribosome 1 0.500231643924161 1 0.999536712151678 hm5C_site_34950 DeepMRMD:1;iRNA_m5C:0.999536712151678 34951 chr1 3329151 3329151 1 + C T SKCM 3329165 + 3329145 3329185 41 CCGCATCCGGCGAGGAGCAGCCGCTGGACCTGAGCATCGGC CCGCATTCGGCGAGGAGCAGCCGCTGGACCTGAGCATCGGC < 41bp 1 0.21773581248141 1 0.20970755815506 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3329165 chr1:3329151 nonsynonymous SNV 0.030 2 7 hm5C_associated_SNPs_35227 0 0 0 0 0 Nucleus 1 0.500231645092315 1 0.99953670981537 hm5C_site_34951 DeepMRMD:1;iRNA_m5C:0.99953670981537 34952 chr5 92923921 92923921 1 + C T SKCM 92923934 + 92923914 92923954 41 TACGCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCC TACGCCTTACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCC < 41bp 1 0.122170546531756 1 0.0722832083702087 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92923934 chr5:92923921 synonymous SNV . 0 8 hm5C_associated_SNPs_35228 0 0 1 0 0 nucleus 1 0.500231643926262 1 0.999536712147476 hm5C_site_34952 DeepMRMD:1;iRNA_m5C:0.999536712147476 34953 chr16 89925708 89925708 1 + C T SKCM 89925700 + 89925680 89925720 41 CACCCACCCCCCAGGAGGGACGGAGCCACCACGGCCCCGAG CACCCACCCCCCAGGAGGGACGGAGCCATCACGGCCCCGAG < 41bp 1 0.487285790072094 1 0.79151576757431 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89925700 chr16:89925708 nonsynonymous SNV 0.001 0 29 hm5C_associated_SNPs_35229 0 0 1 0 0 Cytosol 1 0.500231643921075 0.41696846485138 0.999536712157849 hm5C_site_34953 DeepMRMD:0.41696846485138;iRNA_m5C:0.999536712157849 34954 chr4 41262678 41262678 1 + G A SKCM 41262672 + 41262652 41262692 41 TTACATTCGCAGCATGAGAACTTCAGGAAAAAGCAGATTGA TTACATTCGCAGCATGAGAACTTCAGAAAAAAGCAGATTGA < 41bp 1 0.342095641499789 1 0.220401644706726 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41262672 chr4:41262678 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_35230 0 0 1 0 1 Ribosome 1 0.500226414902695 1 0.999547170194609 hm5C_site_34954 DeepMRMD:1;iRNA_m5C:0.999547170194609 34955 chr7 128852122 128852122 1 + C T SKCM 128852114 + 128852094 128852134 41 GGACTCTTGCCGACAGGGAGCGTGGACCCTGGTCTCCAACC GGACTCTTGCCGACAGGGAGCGTGGACCTTGGTCTCCAACC < 41bp 1 0.431674473836602 1 0.36265030503273 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128852114 chr7:128852122 synonymous SNV . 0 29 hm5C_associated_SNPs_35231 0 0 1 0 0 cytosol 1 0.50023164390256 1 0.99953671219488 hm5C_site_34955 DeepMRMD:1;iRNA_m5C:0.99953671219488 34956 chr16 90028230 90028230 1 + C T SKCM 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACGACCTGGCTGTGATTCCTGCACGCGTTGTACACAAC < 41bp 1 0.143524295089724 1 0.210751324892044 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028230 synonymous SNV . 0 20 hm5C_associated_SNPs_35232 0 0 1 0 2 Ribosome 1 0.5002316527754 1 0.999536694449201 hm5C_site_34956 DeepMRMD:1;iRNA_m5C:0.999536694449201 34957 chr9 107521434 107521434 1 + C T SKCM 107521450 + 107521430 107521470 41 GGATCCCAGAGTTGTGGCAGCTGGTAAGCTGTTTGACTAGG GGATTCCAGAGTTGTGGCAGCTGGTAAGCTGTTTGACTAGG < 41bp 1 0.5772759020946 1 0.269079208374023 experiment 0.8454481958108 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107521450 chr9:107521434 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_35233 0 0 1 0 2 Ribosome 1 0.500242701985041 1 0.999514596029919 hm5C_site_34957 DeepMRMD:1;iRNA_m5C:0.999514596029919 34958 chr11 65271256 65271256 1 + G A SKCM 65271255 + 65271235 65271275 41 TCAGGATTTGAGCGGAAGAACGAATGTAACTTTAAGGCAGG TCAGGATTTGAGCGGAAGAACAAATGTAACTTTAAGGCAGG < 41bp 1 0.385505739822591 1 0.484336584806442 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271255 chr11:65271256 . . 0 22 hm5C_associated_SNPs_35236 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_34958 DeepMRMD:1;iRNA_m5C:0.999536712157816 34959 chr19 1084263 1084263 1 + G A SKCM 1084244 + 1084224 1084264 41 TCTGCACTTGCAGGACGAGTCATCCAACCAGCGAGCTGAGG TCTGCACTTGCAGGACGAGTCATCCAACCAGCGAGCTGAAG < 41bp 1 0.0842509207341848 1 0.0674426555633545 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1084244 chr19:1084263 synonymous SNV . 0 40 hm5C_associated_SNPs_35237 0 0 1 0 2 chromatin 1 0.500231646611995 1 0.999536706776011 hm5C_site_34959 DeepMRMD:1;iRNA_m5C:0.999536706776011 34960 chr17 60769748 60769748 1 + C T SKCM 60769732 + 60769712 60769752 41 TTGAGGGTGCCCGCTACAGCCGCAGCAGCTCCAGCCCCACC TTGAGGGTGCCCGCTACAGCCGCAGCAGCTCCAGCCTCACC < 41bp 1 0.557311904846967 1 0.586535513401031 experiment 0.885376190306066 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60769732 chr17:60769748 nonsynonymous SNV 0.018 1 37 hm5C_associated_SNPs_35238 0 0 0 0 0 Cytosol 1 0.500230384810753 0.826928973197938 0.999539230378494 hm5C_site_34960 DeepMRMD:0.826928973197938;iRNA_m5C:0.999539230378494 34961 chr5 131976454 131976454 1 + C T SKCM 131976460 + 131976440 131976480 41 AGCCAACAACAAATCTTGACCGAGAAAACATTGAATCTCTT AGCCAACAACAAATTTTGACCGAGAAAACATTGAATCTCTT < 41bp 1 0.625530271025487 1 0.523445308208466 experiment 0.748939457949025 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131976460 chr5:131976454 nonsynonymous SNV 0.977 3 15 hm5C_associated_SNPs_35239 0 0 1 0 2 Cytosol 1 0.500231646105069 0.953109383583068 0.999536707789862 hm5C_site_34961 DeepMRMD:0.953109383583068;iRNA_m5C:0.999536707789862 34962 chr7 142458466 142458466 1 + C T SKCM 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTT < 41bp 1 0.302345808406632 1 0.430259674787521 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458466 nonsynonymous SNV 0.733 4 41 hm5C_associated_SNPs_35240 0 0 0 0 2 Cytosol 1 0.500231643215814 1 0.999536713568373 hm5C_site_34962 DeepMRMD:1;iRNA_m5C:0.999536713568373 34963 chr7 142458466 142458466 1 + C T SKCM 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTTTGT < 41bp 1 0.157467569813204 1 0.266753435134888 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458466 nonsynonymous SNV 0.733 4 38 hm5C_associated_SNPs_35241 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34963 DeepMRMD:1;iRNA_m5C:0.999536712157815 34964 chr7 142458466 142458466 1 + C T SKCM 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTTTGTCCC < 41bp 1 0.413257822591464 1 0.434963673353195 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458466 nonsynonymous SNV 0.733 4 35 hm5C_associated_SNPs_35242 0 0 0 0 2 Cytosol 1 0.500231642496014 1 0.999536715007973 hm5C_site_34964 DeepMRMD:1;iRNA_m5C:0.999536715007973 34965 chr7 142458466 142458466 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAA < 41bp 1 0.166292338921661 1 0.644405663013458 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458466 nonsynonymous SNV 0.733 4 17 hm5C_associated_SNPs_35243 0 0 0 0 2 Cytosol 1 0.500231643921092 0.711188673973084 0.999536712157815 hm5C_site_34965 DeepMRMD:0.711188673973084;iRNA_m5C:0.999536712157815 34966 chr7 142458466 142458466 1 + C T SKCM 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.12161806696952 1 0.089351087808609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458466 nonsynonymous SNV 0.733 4 16 hm5C_associated_SNPs_35244 0 0 0 0 2 Cytosol 1 0.500231643921302 1 0.999536712157396 hm5C_site_34966 DeepMRMD:1;iRNA_m5C:0.999536712157396 34967 chr7 142458466 142458466 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.0145988969053265 1 0.114436447620392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458466 nonsynonymous SNV 0.733 4 15 hm5C_associated_SNPs_35245 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34967 DeepMRMD:1;iRNA_m5C:0.999536712157815 34968 chr7 142458466 142458466 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.146923413927511 1 0.0808809399604797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458466 nonsynonymous SNV 0.733 4 14 hm5C_associated_SNPs_35246 0 0 0 0 2 Cytosol 1 0.500231643921194 1 0.999536712157612 hm5C_site_34968 DeepMRMD:1;iRNA_m5C:0.999536712157612 34969 chr7 142458466 142458466 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.213438764847989 1 0.191204905509949 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458466 nonsynonymous SNV 0.733 4 11 hm5C_associated_SNPs_35247 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34969 DeepMRMD:1;iRNA_m5C:0.999536712157815 34970 chr7 142458466 142458466 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTTTGTCCCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.630018740376312 1 0.84321391582489 experiment 0.739962519247376 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458466 nonsynonymous SNV 0.733 4 10 hm5C_associated_SNPs_35248 0 0 0 0 2 Cytosol 1 0.500231643921093 0.31357216835022 0.999536712157815 hm5C_site_34970 DeepMRMD:0.31357216835022;iRNA_m5C:0.999536712157815 34971 chr7 142458466 142458466 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTTTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.123389916039498 1 0.056979775428772 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458466 nonsynonymous SNV 0.733 4 3 hm5C_associated_SNPs_35249 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34971 DeepMRMD:1;iRNA_m5C:0.999536712157815 34972 chr7 142458466 142458466 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TTTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.290849436631632 1 0.0815038084983826 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458466 nonsynonymous SNV 0.733 4 2 hm5C_associated_SNPs_35250 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_34972 DeepMRMD:1;iRNA_m5C:0.999536712157815 34973 chr22 42273324 42273324 1 + C T SKCM 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGCCTCTTCTTTAACCCCCTGACTTCCCTGCTGCAG < 41bp 1 0.240424836351746 1 0.036128044128418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273324 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_35252 0 0 1 0 1 Ribosome 1 0.500231643906497 1 0.999536712187006 hm5C_site_34973 DeepMRMD:1;iRNA_m5C:0.999536712187006 34974 chr11 46400029 46400029 1 + C T SKCM 46400025 + 46400005 46400045 41 AGGTGAAGAGCTGATTGAGGCTGCCAAGAGGAACGACTTCT AGGTGAAGAGCTGATTGAGGCTGCTAAGAGGAACGACTTCT < 41bp 1 0.220931009867245 1 0.130657404661179 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400025 chr11:46400029 synonymous SNV . 0 25 hm5C_associated_SNPs_35253 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34974 DeepMRMD:1;iRNA_m5C:0.999536712157815 34975 chr11 46400029 46400029 1 + C T SKCM 46400038 + 46400018 46400058 41 ATTGAGGCTGCCAAGAGGAACGACTTCTGTAAGGTACTAGC ATTGAGGCTGCTAAGAGGAACGACTTCTGTAAGGTACTAGC < 41bp 1 0.151999881275354 1 0.308357715606689 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46400038 chr11:46400029 synonymous SNV . 0 12 hm5C_associated_SNPs_35254 0 0 1 0 2 Ribosome 1 0.500231640663428 1 0.999536718673144 hm5C_site_34975 DeepMRMD:1;iRNA_m5C:0.999536718673144 34976 chr17 17049365 17049365 1 + T A SKCM 17049376 + 17049356 17049396 41 CTGCTGAATTTCAAGAAAGGCTGGCTGACTAAGCAGTATGA CTGCTGAATATCAAGAAAGGCTGGCTGACTAAGCAGTATGA < 41bp 1 0.162395618185632 1 0.23163765668869 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17049376 chr17:17049365 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_35255 0 0 1 0 2 Cytosol 1 0.500232171440612 1 0.999535657118777 hm5C_site_34976 DeepMRMD:1;iRNA_m5C:0.999535657118777 34977 chr16 57113039 57113039 1 + A G SKCM 57113028 + 57113008 57113048 41 CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATCAGGTA CAGGCCCTGGATGGATCCCCCCATTTGGAAGGGATCAGGTA < 41bp 1 0.067363333258363 1 0.0483819544315338 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57113028 chr16:57113039 nonsynonymous SNV 0.981 1 32 hm5C_associated_SNPs_35256 0 0 0 0 2 Ribosome 1 0.500231643921116 1 0.999536712157768 hm5C_site_34977 DeepMRMD:1;iRNA_m5C:0.999536712157768 34978 chr19 1440440 1440440 1 + C T SKCM 1440441 + 1440421 1440461 41 TCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTAA TCGGGGCCACCCACTCCTCTCGCTTCATCCCTCTCAAGTAA < 41bp 1 0.359542855697842 1 0.272263824939728 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440441 chr19:1440440 synonymous SNV . 0 20 hm5C_associated_SNPs_35257 0 0 1 0 1 Ribosome 1 0.500231643921095 1 0.999536712157809 hm5C_site_34978 DeepMRMD:1;iRNA_m5C:0.999536712157809 34979 chr20 18529286 18529286 1 + C T SKCM 18529305 + 18529285 18529325 41 TCAAGTGTTTAACAACAGTCCTGATGAGTCGTCATATTACA TTAAGTGTTTAACAACAGTCCTGATGAGTCGTCATATTACA < 41bp 1 0.197290251896931 1 0.0349871516227722 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC23B ENSG00000101310 CDS Human protein_coding chr20:18529305 chr20:18529286 stopgain 0.994 1 2 hm5C_associated_SNPs_35258 0 0 1 0 1 Cytosol 1 0.50023165463314 1 0.999536690733721 hm5C_site_34979 DeepMRMD:1;iRNA_m5C:0.999536690733721 34980 chr21 45876569 45876569 1 + C T SKCM 45876551 + 45876531 45876571 41 GGCACCGTGCGCCCACCTCGCCCCTCGCTCCTGCTGGTCTC GGCACCGTGCGCCCACCTCGCCCCTCGCTCCTGCTGGTTTC < 41bp 1 0.344071926954814 1 0.108089745044708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRRC3 ENSG00000160233 CDS Human protein_coding chr21:45876551 chr21:45876569 synonymous SNV . 0 39 hm5C_associated_SNPs_35259 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_34980 DeepMRMD:1;iRNA_m5C:0.999536712157815 34981 chr19 40718847 40718847 1 + C T SKCM 40718840 + 40718820 40718860 41 AGAAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAG AGAAGGGACGAACGTGGGGGCCCAGCTTCACCCTGCAGAAG < 41bp 1 0.0796925013829044 1 0.153538286685944 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718840 chr19:40718847 nonsynonymous SNV 0.975 4 28 hm5C_associated_SNPs_35260 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643984778 1 0.999536712030444 hm5C_site_34981 DeepMRMD:1;iRNA_m5C:0.999536712030444 34982 chr19 40718847 40718847 1 + C T SKCM 40718841 + 40718821 40718861 41 GAAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGG GAAGGGACGAACGTGGGGGCCCAGCTTCACCCTGCAGAAGG < 41bp 1 0.101131702456769 1 0.111550897359848 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718841 chr19:40718847 nonsynonymous SNV 0.975 4 27 hm5C_associated_SNPs_35261 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921219 1 0.999536712157563 hm5C_site_34982 DeepMRMD:1;iRNA_m5C:0.999536712157563 34983 chr19 40718847 40718847 1 + C T SKCM 40718842 + 40718822 40718862 41 AAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGGA AAGGGACGAACGTGGGGGCCCAGCTTCACCCTGCAGAAGGA < 41bp 1 0.209750223195833 1 0.187563806772232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718842 chr19:40718847 nonsynonymous SNV 0.975 4 26 hm5C_associated_SNPs_35262 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643931397 1 0.999536712137205 hm5C_site_34983 DeepMRMD:1;iRNA_m5C:0.999536712137205 34984 chr8 25168014 25168014 1 + C T SKCM 25168004 + 25167984 25168024 41 ACACTTGGTTGATAGATCAACAGCAATAGCCCGGAAGATGG ACACTTGGTTGATAGATCAACAGCAATAGCTCGGAAGATGG < 41bp 1 0.515472060223843 1 0.188619554042816 experiment 0.969055879552314 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25168004 chr8:25168014 synonymous SNV . 0 31 hm5C_associated_SNPs_35263 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_34984 DeepMRMD:1;iRNA_m5C:0.999536712157815 34985 chr9 131105503 131105503 1 + T C SKCM 131105522 + 131105502 131105542 41 TTCCTCTACTTGGGATCTGGCGGCTGGCGCTTCATCCGGGT TCCCTCTACTTGGGATCTGGCGGCTGGCGCTTCATCCGGGT < 41bp 1 0.625409999101098 1 0.785299479961395 experiment 0.749180001797805 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131105522 chr9:131105503 nonsynonymous SNV 0.988 0 2 hm5C_associated_SNPs_35264 0 0 1 0 2 Ribosome 1 0.500231643921059 0.42940104007721 0.999536712157882 hm5C_site_34985 DeepMRMD:0.42940104007721;iRNA_m5C:0.999536712157882 34986 chr7 2613086 2613086 1 + A C SKCM 2613101 + 2613081 2613121 41 GAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAA GAAAACGAAGATATGTATGACGAGATTATTGAGTTAAAGAA < 41bp 1 0.464188092748483 1 0.535207331180573 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IQCE ENSG00000106012 CDS Human protein_coding chr7:2613101 chr7:2613086 nonsynonymous SNV 0.993 4 6 hm5C_associated_SNPs_35265 0 0 0 0 2 chromatin 1 0.500241064661599 0.929585337638854 0.999517870676803 hm5C_site_34986 DeepMRMD:0.929585337638854;iRNA_m5C:0.999517870676803 34987 chr5 112176283 112176283 1 + C T SKCM 112176287 + 112176267 112176307 41 ATCTAACAATCGAATCCCCTCCAAATGAGTTAGCTGCTGGA ATCTAACAATCGAATCTCCTCCAAATGAGTTAGCTGCTGGA < 41bp 1 0.131828601597257 1 0.612512588500977 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APC ENSG00000134982 CDS Human protein_coding chr5:112176287 chr5:112176283 synonymous SNV . 0 17 hm5C_associated_SNPs_35266 0 0 1 0 0 Cytosol 1 0.500231646858769 0.774974822998046 0.999536706282462 hm5C_site_34987 DeepMRMD:0.774974822998046;iRNA_m5C:0.999536706282462 34988 chr5 112176283 112176283 1 + C T SKCM 112176300 + 112176280 112176320 41 ATCCCCTCCAAATGAGTTAGCTGCTGGAGAAGGAGTTAGAG ATCTCCTCCAAATGAGTTAGCTGCTGGAGAAGGAGTTAGAG < 41bp 1 0.280299294634205 1 0.198678582906723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APC ENSG00000134982 CDS Human protein_coding chr5:112176300 chr5:112176283 synonymous SNV . 0 4 hm5C_associated_SNPs_35267 0 0 1 0 0 Cytosol 1 0.5002316439211 1 0.9995367121578 hm5C_site_34988 DeepMRMD:1;iRNA_m5C:0.9995367121578 34989 chr5 33463897 33463897 1 + A C SKCM 33463905 + 33463885 33463925 41 AATGGTAGTTCCAGTGGGACCAACCTGTGATGAATATGCCC AATGGTAGTTCCCGTGGGACCAACCTGTGATGAATATGCCC < 41bp 1 0.348919331232273 1 0.426869451999664 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33463905 chr5:33463897 synonymous SNV . 0 13 hm5C_associated_SNPs_35268 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_34989 DeepMRMD:1;iRNA_m5C:0.999536712157815 34990 chr1 40724014 40724014 1 + T G SKCM 40724018 + 40723998 40724038 41 ATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCT ATCTTCGGGGCCGTGCGGCTCTTTTCCTGGACAGTGTATCT < 41bp 1 0.176601088391612 1 0.0177543163299561 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40724018 chr1:40724014 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_35270 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_34990 DeepMRMD:1;iRNA_m5C:0.999536712157815 34991 chr11 6629302 6629302 1 + A T SKCM 6629293 + 6629273 6629313 41 AAGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCC AAGGGACGATCATGGCTTCTCCCCCTTGCTCTGGGCCTGCC < 41bp 1 0.236341215957441 1 0.280775129795074 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629293 chr11:6629302 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_35271 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643875681 1 0.999536712248639 hm5C_site_34991 DeepMRMD:1;iRNA_m5C:0.999536712248639 34992 chr11 6629302 6629302 1 + A T SKCM 6629294 + 6629274 6629314 41 AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG AGGGACGATCATGGCTTCTCCCCCTTGCTCTGGGCCTGCCG < 41bp 1 0.198068763360355 1 0.0744930505752563 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629294 chr11:6629302 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_35272 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645413107 1 0.999536709173786 hm5C_site_34992 DeepMRMD:1;iRNA_m5C:0.999536709173786 34993 chr19 757067 757067 1 + A G SKCM 757057 + 757037 757077 41 TACCATCTGGTGTGCATGGGCCCCGAGGCCAGCGGCTGGGG TACCATCTGGTGTGCATGGGCCCCGAGGCCGGCGGCTGGGG < 41bp 1 0.308066997416805 1 0.111590534448624 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757057 chr19:757067 nonsynonymous SNV 0.022 0 31 hm5C_associated_SNPs_35273 0 0 1 0 0 nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_34993 DeepMRMD:1;iRNA_m5C:0.999536712157813 34994 chr19 757067 757067 1 + A G SKCM 757058 + 757038 757078 41 ACCATCTGGTGTGCATGGGCCCCGAGGCCAGCGGCTGGGGC ACCATCTGGTGTGCATGGGCCCCGAGGCCGGCGGCTGGGGC < 41bp 1 0.588164095005953 1 0.482728600502014 experiment 0.823671809988093 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757058 chr19:757067 nonsynonymous SNV 0.022 0 30 hm5C_associated_SNPs_35274 0 0 1 0 0 nucleus 1 0.500231643943755 1 0.999536712112491 hm5C_site_34994 DeepMRMD:1;iRNA_m5C:0.999536712112491 34995 chr19 757067 757067 1 + A G SKCM 757059 + 757039 757079 41 CCATCTGGTGTGCATGGGCCCCGAGGCCAGCGGCTGGGGCC CCATCTGGTGTGCATGGGCCCCGAGGCCGGCGGCTGGGGCC < 41bp 1 0.44776199543199 1 0.304780602455139 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757059 chr19:757067 nonsynonymous SNV 0.022 0 29 hm5C_associated_SNPs_35275 0 0 1 0 0 nucleus 1 0.50023164392115 1 0.999536712157701 hm5C_site_34995 DeepMRMD:1;iRNA_m5C:0.999536712157701 34996 chr10 43882357 43882357 1 + T G SKCM 43882365 - 43882345 43882385 41 AGTCCATATTGAGATTGGCCCAGATGGAAGAGTGACGGGTG AGTCCATATTGAGATTGGCCCAGATGGACGAGTGACGGGTG < 41bp 1 0.566544152708893 1 0.36660560965538 experiment 0.866911694582214 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPF ENSG00000169813 CDS Human protein_coding chr10:43882365 chr10:43882357 synonymous SNV . 0 29 hm5C_associated_SNPs_35277 0 0 1 0 0 Cytosol 1 0.500231643921025 1 0.999536712157951 hm5C_site_34996 DeepMRMD:1;iRNA_m5C:0.999536712157951 34997 chr10 43882357 43882357 1 + T G SKCM 43882366 - 43882346 43882386 41 GAGTCCATATTGAGATTGGCCCAGATGGAAGAGTGACGGGT GAGTCCATATTGAGATTGGCCCAGATGGACGAGTGACGGGT < 41bp 1 0.515322848020908 1 0.282254457473755 experiment 0.969354303958184 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPF ENSG00000169813 CDS Human protein_coding chr10:43882366 chr10:43882357 synonymous SNV . 0 30 hm5C_associated_SNPs_35278 0 0 1 0 0 Cytosol 1 0.50023192503051 1 0.99953614993898 hm5C_site_34997 DeepMRMD:1;iRNA_m5C:0.99953614993898 34998 chr12 109547664 109547664 1 + C T SKCM 109547670 + 109547650 109547690 41 TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG TACAGACGGCTCATTCCTCCCCTTTGTCAGTGTATAGAGGG < 41bp 1 0.0430506972583937 1 0.0343689322471619 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547670 chr12:109547664 nonsynonymous SNV 0.938 4 15 hm5C_associated_SNPs_35281 0 0 1 0 1 Ribosome 1 0.500231643929577 1 0.999536712140846 hm5C_site_34998 DeepMRMD:1;iRNA_m5C:0.999536712140846 34999 chr17 53014034 53014034 1 + T G SKCM 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TGTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA < 41bp 1 0.696610541358972 1 0.688609182834625 experiment 0.606778917282056 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014034 nonsynonymous SNV 0.996 0 2 hm5C_associated_SNPs_35282 0 0 1 0 2 Cytosol 1 0.500231643921092 0.62278163433075 0.999536712157815 hm5C_site_34999 DeepMRMD:0.62278163433075;iRNA_m5C:0.999536712157815 35000 chr19 7620634 7620634 1 + C T SKCM 7620645 + 7620625 7620665 41 GCAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA GCAGCGGGCTCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA < 41bp 1 0.262010107168434 1 0.541321337223053 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620645 chr19:7620634 synonymous SNV . 0 10 hm5C_associated_SNPs_35283 0 0 1 0 1 Ribosome 1 0.50023164392109 0.917357325553894 0.999536712157819 hm5C_site_35000 DeepMRMD:0.917357325553894;iRNA_m5C:0.999536712157819 35001 chr19 7620634 7620634 1 + C T SKCM 7620646 + 7620626 7620666 41 CAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG CAGCGGGCTCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG < 41bp 1 0.493453902586862 1 0.748051583766937 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620646 chr19:7620634 synonymous SNV . 0 9 hm5C_associated_SNPs_35284 0 0 1 0 1 Ribosome 1 0.500231643921092 0.503896832466126 0.999536712157815 hm5C_site_35001 DeepMRMD:0.503896832466126;iRNA_m5C:0.999536712157815 35002 chr6 7572239 7572239 1 + A C SKCM 7572244 + 7572224 7572264 41 AGGATGACTCTCAAAAACCTCCCTCTAGCAGACCAGGGATC AGGATGACTCTCAAACACCTCCCTCTAGCAGACCAGGGATC < 41bp 1 0.0353638678539101 1 0.141133308410645 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572244 chr6:7572239 nonsynonymous SNV 0.705 0 16 hm5C_associated_SNPs_35285 0 0 1 0 1 Nucleus 1 0.500231643920851 1 0.999536712158297 hm5C_site_35002 DeepMRMD:1;iRNA_m5C:0.999536712158297 35003 chr11 6629303 6629303 1 + C T SKCM 6629293 + 6629273 6629313 41 AAGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCC AAGGGACGATCATGGCTTCTCCCCCTTGCATTGGGCCTGCC < 41bp 1 0.216602911412555 1 0.115522682666779 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629293 chr11:6629303 synonymous SNV . 0 31 hm5C_associated_SNPs_35286 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643844867 1 0.999536712310266 hm5C_site_35003 DeepMRMD:1;iRNA_m5C:0.999536712310266 35004 chr11 6629303 6629303 1 + C T SKCM 6629294 + 6629274 6629314 41 AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG AGGGACGATCATGGCTTCTCCCCCTTGCATTGGGCCTGCCG < 41bp 1 0.173355048235657 1 0.0767934322357178 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629294 chr11:6629303 synonymous SNV . 0 30 hm5C_associated_SNPs_35287 0 0 1 0 1 Endoplasmic reticulum 1 0.500231651816151 1 0.999536696367698 hm5C_site_35004 DeepMRMD:1;iRNA_m5C:0.999536696367698 35005 chr5 38885522 38885522 1 + C T SKCM 38885507 + 38885487 38885527 41 CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATCCTGGG CCGAGGACTTCAAGACTTTGCACTGTACTTGGGATTCTGGG < 41bp 1 0.31995559452101 1 0.0681895613670349 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSMR ENSG00000145623 CDS Human protein_coding chr5:38885507 chr5:38885522 nonsynonymous SNV 0.811 3 36 hm5C_associated_SNPs_35288 0 0 1 0 2 Nucleus 1 0.500231809842082 1 0.999536380315835 hm5C_site_35005 DeepMRMD:1;iRNA_m5C:0.999536380315835 35006 chr4 3174747 3174747 1 + C T SKCM 3174757 + 3174737 3174777 41 AGTGTGAGGCCAGGCTTGTACCACTACTGCTTCATGGCCCC AGTGTGAGGCTAGGCTTGTACCACTACTGCTTCATGGCCCC < 41bp 1 0.176891836381965 1 0.411152333021164 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3174757 chr4:3174747 nonsynonymous SNV 0.996 4 11 hm5C_associated_SNPs_35290 0 0 1 0 0 Cytosol 1 0.500231643921106 1 0.999536712157788 hm5C_site_35006 DeepMRMD:1;iRNA_m5C:0.999536712157788 35007 chr20 18142488 18142488 1 + C T SKCM 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG TCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG < 41bp 1 0.105770430966114 1 0.0389922559261322 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142488 nonsynonymous SNV 0.997 3 1 hm5C_associated_SNPs_35292 0 0 0 0 2 Nucleus 1 0.500231643921436 1 0.999536712157127 hm5C_site_35007 DeepMRMD:1;iRNA_m5C:0.999536712157127 35008 chr6 42561953 42561953 1 + T G SKCM 42561936 + 42561916 42561956 41 ATTTTTTTCCAAGATGACAACATCAGGAGGTGGAGGTTTCT ATTTTTTTCCAAGATGACAACATCAGGAGGTGGAGGTGTCT < 41bp 1 0.16697280475511 1 0.123243719339371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR2 ENSG00000024048 CDS Human protein_coding chr6:42561936 chr6:42561953 nonsynonymous SNV 0.998 3 38 hm5C_associated_SNPs_35293 0 0 1 0 2 Cytosol 1 0.500231643919364 1 0.999536712161273 hm5C_site_35008 DeepMRMD:1;iRNA_m5C:0.999536712161273 35009 chr11 66249785 66249785 1 + C T SKCM 66249791 + 66249771 66249811 41 GCCTACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGGC GCCTACCACCTGTCTCGTGCCGCCTGGTACGGAGGCCTGGC < 41bp 1 0.549957996479456 1 0.202246338129044 experiment 0.900084007041088 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249791 chr11:66249785 synonymous SNV . 0 15 hm5C_associated_SNPs_35294 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35009 DeepMRMD:1;iRNA_m5C:0.999536712157815 35010 chr11 66249785 66249785 1 + C T SKCM 66249793 + 66249773 66249813 41 CTACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGGCTG CTACCACCTGTCTCGTGCCGCCTGGTACGGAGGCCTGGCTG < 41bp 1 0.355482601404793 1 0.0558768212795258 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249793 chr11:66249785 synonymous SNV . 0 13 hm5C_associated_SNPs_35295 0 0 1 0 0 Nucleus 1 0.500231643921081 1 0.999536712157837 hm5C_site_35010 DeepMRMD:1;iRNA_m5C:0.999536712157837 35011 chr11 66249785 66249785 1 + C T SKCM 66249794 + 66249774 66249814 41 TACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGGCTGT TACCACCTGTCTCGTGCCGCCTGGTACGGAGGCCTGGCTGT < 41bp 1 0.662984800715438 1 0.280359417200089 experiment 0.674030398569125 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249794 chr11:66249785 synonymous SNV . 0 12 hm5C_associated_SNPs_35296 0 0 1 0 0 Nucleus 1 0.500231644050438 1 0.999536711899125 hm5C_site_35011 DeepMRMD:1;iRNA_m5C:0.999536711899125 35012 chr11 47296655 47296655 1 + T C SKCM 47296654 + 47296634 47296674 41 ACTCTCAAGCGCCTGGTGGACTGCTGTAGTGAGCGCCTTCT ACTCTCAAGCGCCTGGTGGACCGCTGTAGTGAGCGCCTTCT < 41bp 1 0.305039282850464 1 0.1430624127388 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MADD ENSG00000110514 CDS Human protein_coding chr11:47296654 chr11:47296655 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_35297 0 0 1 0 1 Nucleus 1 0.500231643921372 1 0.999536712157256 hm5C_site_35012 DeepMRMD:1;iRNA_m5C:0.999536712157256 35013 chr17 60769742 60769742 1 + C T SKCM 60769732 + 60769712 60769752 41 TTGAGGGTGCCCGCTACAGCCGCAGCAGCTCCAGCCCCACC TTGAGGGTGCCCGCTACAGCCGCAGCAGCTTCAGCCCCACC < 41bp 1 0.553819834178467 1 0.495182633399963 experiment 0.892360331643067 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60769732 chr17:60769742 nonsynonymous SNV 0.361 2 31 hm5C_associated_SNPs_35298 0 0 0 0 0 Cytosol 1 0.500231643921506 1 0.999536712156987 hm5C_site_35013 DeepMRMD:1;iRNA_m5C:0.999536712156987 35014 chr12 52695781 52695781 1 + C T SKCM 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA GCCCGGCCGCTGCTGCATTACCGCCGCCCCCTACCGTGGCA < 41bp 1 0.447462058781803 1 0.121673375368118 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695781 synonymous SNV . 0 19 hm5C_associated_SNPs_35299 0 0 0 0 1 nucleus 1 0.500231656279525 1 0.999536687440951 hm5C_site_35014 DeepMRMD:1;iRNA_m5C:0.999536687440951 35015 chr6 161470210 161470210 1 + A G SKCM 161470199 + 161470179 161470219 41 CAGATATTATTAATGAAATCCTTACTTTCAAAGTCGACTAT CAGATATTATTAATGAAATCCTTACTTTCAAGGTCGACTAT < 41bp 1 0.0668648654789737 1 0.033067375421524 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161470199 chr6:161470210 synonymous SNV . 0 32 hm5C_associated_SNPs_35300 0 0 1 0 0 Cytosol 1 0.500231643901016 1 0.999536712197969 hm5C_site_35015 DeepMRMD:1;iRNA_m5C:0.999536712197969 35016 chr19 1041937 1041937 1 + G A SKCM 1041928 + 1041908 1041948 41 CCTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGC CCTGCTTTCCGCAGCTGACACCGGGCGAGAAGCCCGGGCGC < 41bp 1 0.635502807405653 1 0.853396952152252 experiment 0.728994385188695 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041928 chr19:1041937 nonsynonymous SNV 0.027 1 30 hm5C_associated_SNPs_35301 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.293206095695496 0.999536712157815 hm5C_site_35016 DeepMRMD:0.293206095695496;iRNA_m5C:0.999536712157815 35017 chr19 1041937 1041937 1 + G A SKCM 1041929 + 1041909 1041949 41 CTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCC CTGCTTTCCGCAGCTGACACCGGGCGAGAAGCCCGGGCGCC < 41bp 1 0.422577388793585 1 0.931329011917114 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041929 chr19:1041937 nonsynonymous SNV 0.027 1 29 hm5C_associated_SNPs_35302 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921087 0.137341976165772 0.999536712157825 hm5C_site_35017 DeepMRMD:0.137341976165772;iRNA_m5C:0.999536712157825 35018 chr19 1041937 1041937 1 + G A SKCM 1041933 + 1041913 1041953 41 TTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAG TTTCCGCAGCTGACACCGGGCGAGAAGCCCGGGCGCCTGAG < 41bp 1 0.598655957732015 1 0.785311341285706 experiment 0.802688084535971 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041933 chr19:1041937 nonsynonymous SNV 0.027 1 25 hm5C_associated_SNPs_35303 0 0 0 0 1 Endoplasmic reticulum 1 0.500231649145435 0.429377317428588 0.999536701709129 hm5C_site_35018 DeepMRMD:0.429377317428588;iRNA_m5C:0.999536701709129 35019 chr19 1041937 1041937 1 + G A SKCM 1041940 + 1041920 1041960 41 AGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC AGCTGACACCGGGCGAGAAGCCCGGGCGCCTGAGCAACTTC < 41bp 1 0.431331238194898 1 0.542791962623596 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041940 chr19:1041937 nonsynonymous SNV 0.027 1 18 hm5C_associated_SNPs_35304 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920997 0.914416074752808 0.999536712158005 hm5C_site_35019 DeepMRMD:0.914416074752808;iRNA_m5C:0.999536712158005 35020 chr19 1041937 1041937 1 + G A SKCM 1041941 + 1041921 1041961 41 GCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA GCTGACACCGGGCGAGAAGCCCGGGCGCCTGAGCAACTTCA < 41bp 1 0.424546367291413 1 0.826460182666779 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041941 chr19:1041937 nonsynonymous SNV 0.027 1 17 hm5C_associated_SNPs_35305 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921068 0.347079634666442 0.999536712157865 hm5C_site_35020 DeepMRMD:0.347079634666442;iRNA_m5C:0.999536712157865 35021 chr19 1041937 1041937 1 + G A SKCM 1041942 + 1041922 1041962 41 CTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA CTGACACCGGGCGAGAAGCCCGGGCGCCTGAGCAACTTCAA < 41bp 1 0.413893459960855 1 0.791459321975708 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041942 chr19:1041937 nonsynonymous SNV 0.027 1 16 hm5C_associated_SNPs_35306 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643929104 0.417081356048584 0.999536712141793 hm5C_site_35021 DeepMRMD:0.417081356048584;iRNA_m5C:0.999536712141793 35022 chr11 65347680 65347680 1 + T C SKCM 65347700 + 65347680 65347720 41 TGAGCTGAGCCTCACTCTTTCCGGGGTGCTGCTGCGGGAGG CGAGCTGAGCCTCACTCTTTCCGGGGTGCTGCTGCGGGAGG < 41bp 1 0.632631601174668 1 0.681084990501404 experiment 0.734736797650664 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65347700 chr11:65347680 synonymous SNV . 0 1 hm5C_associated_SNPs_35307 0 0 1 0 1 chromatin 1 0.500231643921092 0.637830018997192 0.999536712157815 hm5C_site_35022 DeepMRMD:0.637830018997192;iRNA_m5C:0.999536712157815 35023 chr2 74328504 74328504 1 + T A SKCM 74328499 + 74328479 74328519 41 ACCTCGGCCTTGGCTGGGCCCAGCCTGACTGAGAAGCCGTG ACCTCGGCCTTGGCTGGGCCCAGCCAGACTGAGAAGCCGTG < 41bp 1 0.188219534800043 1 0.0675636827945709 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74328499 chr2:74328504 nonsynonymous SNV 0.975 1 26 hm5C_associated_SNPs_35308 0 0 1 0 0 Cytosol 1 0.500231643943719 1 0.999536712112562 hm5C_site_35023 DeepMRMD:1;iRNA_m5C:0.999536712112562 35024 chr1 113238118 113238118 1 + C T SKCM 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC TCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC < 41bp 1 0.0537672857294587 1 0.0459977686405182 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238118 synonymous SNV . 0 1 hm5C_associated_SNPs_35309 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35024 DeepMRMD:1;iRNA_m5C:0.999536712157815 35025 chr12 56075839 56075839 1 + C T SKCM 56075823 + 56075803 56075843 41 CCACCGGGCTGCAGGGTCACCTGCCTAGACCCAAATCCCCA CCACCGGGCTGCAGGGTCACCTGCCTAGACCCAAATTCCCA < 41bp 1 0.41861001720381 1 0.0705180764198303 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL7B ENSG00000170439 CDS Human protein_coding chr12:56075823 chr12:56075839 nonsynonymous SNV 0.998 4 37 hm5C_associated_SNPs_35310 0 0 1 0 0 Cytosol 1 0.500231647165228 1 0.999536705669544 hm5C_site_35025 DeepMRMD:1;iRNA_m5C:0.999536705669544 35026 chr1 113238119 113238119 1 + C T SKCM 113238138 + 113238118 113238158 41 CCGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC CTGGGTCCACCTTCCTAGCTCCATCTACCGCCTCCTGGCCC < 41bp 1 0.0496707064677229 1 0.0481998026371002 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238138 chr1:113238119 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_35311 0 0 1 0 2 Cytosol 1 0.500231643913358 1 0.999536712173284 hm5C_site_35026 DeepMRMD:1;iRNA_m5C:0.999536712173284 35027 chr7 100204230 100204230 1 + C A SKCM 100204239 + 100204219 100204259 41 TCCGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT TCCGGAGAAAAAAGAGGAATCTCCTTCAGCCCCTGGTGAGT < 41bp 1 0.326977060098946 1 0.351539969444275 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204239 chr7:100204230 nonsynonymous SNV 0.002 0 12 hm5C_associated_SNPs_35312 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643446181 1 0.999536713107638 hm5C_site_35027 DeepMRMD:1;iRNA_m5C:0.999536713107638 35028 chr6 133844271 133844271 1 + G A SKCM 133844283 + 133844263 133844303 41 TAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTG TAGTTTAGAAGGTGCTTTCCCCATTGAGAATATTTACAGTG < 41bp 1 0.0712419386462049 1 0.28696882724762 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844283 chr6:133844271 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_35313 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_35028 DeepMRMD:1;iRNA_m5C:0.999536712157815 35029 chr6 133844271 133844271 1 + G A SKCM 133844284 + 133844264 133844304 41 AGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGC AGTTTAGAAGGTGCTTTCCCCATTGAGAATATTTACAGTGC < 41bp 1 0.0805080584053977 1 0.150770664215088 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133844284 chr6:133844271 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_35314 0 0 0 0 2 Cytosol 1 0.500231643920986 1 0.999536712158028 hm5C_site_35029 DeepMRMD:1;iRNA_m5C:0.999536712158028 35030 chr7 100204225 100204225 1 + G A SKCM 100204239 + 100204219 100204259 41 TCCGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT TCCGGAAAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT < 41bp 1 0.375920644903541 1 0.215027749538422 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204239 chr7:100204225 synonymous SNV . 0 7 hm5C_associated_SNPs_35315 0 0 0 0 1 Endoplasmic reticulum 1 0.500233375022758 1 0.999533249954484 hm5C_site_35030 DeepMRMD:1;iRNA_m5C:0.999533249954484 35031 chrX 57515255 57515255 1 + C T SKCM 57515266 + 57515246 57515286 41 AAAGGACTCCCTTTAGGCATCCAGGTTGTGGCTGGACCCTT AAAGGACTCTCTTTAGGCATCCAGGTTGTGGCTGGACCCTT < 41bp 1 0.542314749342371 1 0.839446902275085 experiment 0.915370501315259 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57515266 chrX:57515255 nonsynonymous SNV 0.924 4 10 hm5C_associated_SNPs_35316 0 0 0 0 1 nucleus 1 0.500231643921092 0.32110619544983 0.999536712157815 hm5C_site_35031 DeepMRMD:0.32110619544983;iRNA_m5C:0.999536712157815 35032 chr17 38152539 38152539 1 + C T SKCM 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTCCACCCGAGAGCCCCAGCTAGTCTTCCACCAGCGCATC < 41bp 1 0.422967174550758 1 0.0737082064151764 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152539 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_35317 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35032 DeepMRMD:1;iRNA_m5C:0.999536712157815 35033 chr8 144732969 144732969 1 + C T SKCM 144732951 + 144732931 144732971 41 GGGAAGGCATTCCGTCATCGCTCAGACCTTATTGAACACCA GGGAAGGCATTCCGTCATCGCTCAGACCTTATTGAACATCA < 41bp 1 0.523216244366046 1 0.120836973190308 experiment 0.953567511267908 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF623 ENSG00000183309 CDS Human protein_coding chr8:144732951 chr8:144732969 synonymous SNV . 0 39 hm5C_associated_SNPs_35319 0 0 1 0 0 cytosol 1 0.500231575753483 1 0.999536848493034 hm5C_site_35033 DeepMRMD:1;iRNA_m5C:0.999536848493034 35034 chr5 10263303 10263303 1 + C T SKCM 10263299 + 10263279 10263319 41 TTTGCCGACGCACTGGAGGTCATCCCCATGGCCCTCTCTGA TTTGCCGACGCACTGGAGGTCATCTCCATGGCCCTCTCTGA < 41bp 1 0.167803257073485 1 0.13427060842514 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCT5 ENSG00000150753 CDS Human protein_coding chr5:10263299 chr5:10263303 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_35320 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_35034 DeepMRMD:1;iRNA_m5C:0.999536712157812 35035 chr13 77570195 77570195 1 + T A SKCM 77570189 + 77570169 77570209 41 TGGTGTAATCAAGGCGCTGCCTGCTTTTTTGAGGGAATTGA TGGTGTAATCAAGGCGCTGCCTGCTTATTTGAGGGAATTGA < 41bp 1 0.619993321180231 1 0.169852048158646 experiment 0.760013357639538 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570189 chr13:77570195 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_35321 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643922538 1 0.999536712154923 hm5C_site_35035 DeepMRMD:1;iRNA_m5C:0.999536712154923 35036 chr12 132589002 132589002 1 + C T SKCM 132588993 + 132588973 132589013 41 GCAGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCC GCAGAATGTGCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCC < 41bp 1 0.219881623480044 1 0.0674736797809601 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588993 chr12:132589002 nonsynonymous SNV 0.436 3 30 hm5C_associated_SNPs_35322 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35036 DeepMRMD:1;iRNA_m5C:0.999536712157815 35037 chr12 132589002 132589002 1 + C T SKCM 132588994 + 132588974 132589014 41 CAGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCT CAGAATGTGCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCCT < 41bp 1 0.210737495412398 1 0.0624147951602936 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588994 chr12:132589002 nonsynonymous SNV 0.436 3 29 hm5C_associated_SNPs_35323 0 0 1 0 1 chromatin 1 0.500231643921082 1 0.999536712157836 hm5C_site_35037 DeepMRMD:1;iRNA_m5C:0.999536712157836 35038 chr12 132589002 132589002 1 + C T SKCM 132588995 + 132588975 132589015 41 AGAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTC AGAATGTGCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCCTC < 41bp 1 0.280775674812872 1 0.19547775387764 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588995 chr12:132589002 nonsynonymous SNV 0.436 3 28 hm5C_associated_SNPs_35324 0 0 1 0 1 chromatin 1 0.500231643920988 1 0.999536712158024 hm5C_site_35038 DeepMRMD:1;iRNA_m5C:0.999536712158024 35039 chr12 132589002 132589002 1 + C T SKCM 132588996 + 132588976 132589016 41 GAATGTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCT GAATGTGCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCCTCT < 41bp 1 0.580430074896735 1 0.428669631481171 experiment 0.839139850206529 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132588996 chr12:132589002 nonsynonymous SNV 0.436 3 27 hm5C_associated_SNPs_35325 0 0 1 0 1 chromatin 1 0.500231641884571 1 0.999536716230857 hm5C_site_35039 DeepMRMD:1;iRNA_m5C:0.999536716230857 35040 chr12 132589002 132589002 1 + C T SKCM 132589000 + 132588980 132589020 41 GTGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAG GTGCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCCTCTGCAG < 41bp 1 0.124963644191009 1 0.120837360620499 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589000 chr12:132589002 nonsynonymous SNV 0.436 3 23 hm5C_associated_SNPs_35326 0 0 1 0 1 chromatin 1 0.500231643921095 1 0.99953671215781 hm5C_site_35040 DeepMRMD:1;iRNA_m5C:0.99953671215781 35041 chr12 132589002 132589002 1 + C T SKCM 132589001 + 132588981 132589021 41 TGCGTGCAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGC TGCGTGCAGGTGCCCCTGGCCTTGGGCTGGGCCTCTGCAGC < 41bp 1 0.582547891642189 1 0.470126092433929 experiment 0.834904216715623 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589001 chr12:132589002 nonsynonymous SNV 0.436 3 22 hm5C_associated_SNPs_35327 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35041 DeepMRMD:1;iRNA_m5C:0.999536712157815 35042 chr12 132589002 132589002 1 + C T SKCM 132589007 + 132588987 132589027 41 CAGGTGCCCCTGGCCCTGGGCTGGGCCTCTGCAGCAGCAGC CAGGTGCCCCTGGCCTTGGGCTGGGCCTCTGCAGCAGCAGC < 41bp 1 0.610905022547003 1 0.463768512010574 experiment 0.778189954905993 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589007 chr12:132589002 nonsynonymous SNV 0.436 3 16 hm5C_associated_SNPs_35328 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_35042 DeepMRMD:1;iRNA_m5C:0.999536712157815 35043 chr1 78399027 78399027 1 + G A SKCM 78399025 + 78399005 78399045 41 CTCTCAAGAATTTCTTACACCGGGAAAACTGGAAATTAATT CTCTCAAGAATTTCTTACACCGAGAAAACTGGAAATTAATT < 41bp 1 0.562717021996413 1 0.507203996181488 experiment 0.874565956007174 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEXN ENSG00000162614 CDS Human protein_coding chr1:78399025 chr1:78399027 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_35329 0 0 0 0 1 nucleoplasm 1 0.500231642805911 0.985592007637024 0.999536714388179 hm5C_site_35043 DeepMRMD:0.985592007637024;iRNA_m5C:0.999536714388179 35044 chr17 64785059 64785059 1 + G A SKCM 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGAAGAA < 41bp 1 0.275194192293672 1 0.213401317596436 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785059 nonsynonymous SNV 0.999 1 37 hm5C_associated_SNPs_35330 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35044 DeepMRMD:1;iRNA_m5C:0.999536712157815 35045 chr17 64785059 64785059 1 + G A SKCM 64785046 + 64785026 64785066 41 GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAG GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGAAGAACAG < 41bp 1 0.565523788332249 1 0.551956653594971 experiment 0.868952423335501 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785046 chr17:64785059 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_35331 0 0 1 0 1 Ribosome 1 0.500231643921092 0.896086692810058 0.999536712157815 hm5C_site_35045 DeepMRMD:0.896086692810058;iRNA_m5C:0.999536712157815 35046 chr2 24974859 24974859 1 + C T SKCM 24974873 + 24974853 24974893 41 ATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAG ATGGTTTCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAG < 41bp 1 0.201416600756388 1 0.0650980174541473 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24974873 chr2:24974859 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_35332 0 0 0 0 1 Cytosol 1 0.500231643921213 1 0.999536712157573 hm5C_site_35046 DeepMRMD:1;iRNA_m5C:0.999536712157573 35047 chr14 64628973 64628973 1 + C T SKCM 64628971 + 64628951 64628991 41 ACAACCTGGCAGAGATCCTGCCCCCAGCCCTGCAGGACATA ACAACCTGGCAGAGATCCTGCCTCCAGCCCTGCAGGACATA < 41bp 1 0.0435307246381422 1 0.0632185935974121 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64628971 chr14:64628973 synonymous SNV . 0 23 hm5C_associated_SNPs_35334 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35047 DeepMRMD:1;iRNA_m5C:0.999536712157815 35048 chr17 74557740 74557740 1 + C T SKCM 74557758 + 74557738 74557778 41 TCCCTGTCTGAAAATCTGGACTGAGGGAAATAATCTATTCT TCTCTGTCTGAAAATCTGGACTGAGGGAAATAATCTATTCT < 41bp 1 0.334271973105072 1 0.154445379972458 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD1A ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74557758 chr17:74557740 . . 0 3 hm5C_associated_SNPs_35335 0 0 1 0 0 unknown 1 0.500231638347708 1 0.999536723304584 hm5C_site_35048 DeepMRMD:1;iRNA_m5C:0.999536723304584 35049 chr17 4926874 4926874 1 + C T SKCM 4926871 + 4926851 4926891 41 ACCGCATGCCGTCAGCCCGGCCCCCCTCGCCACCACTGTCA ACCGCATGCCGTCAGCCCGGCCCTCCTCGCCACCACTGTCA < 41bp 1 0.0323388408381261 1 0.015949159860611 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926871 chr17:4926874 nonsynonymous SNV 0.029 0 24 hm5C_associated_SNPs_35336 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_35049 DeepMRMD:1;iRNA_m5C:0.999536712157814 35050 chr17 4926874 4926874 1 + C T SKCM 4926880 + 4926860 4926900 41 CGTCAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAG CGTCAGCCCGGCCCTCCTCGCCACCACTGTCAAGCTGGGAG < 41bp 1 0.0912389651568241 1 0.107522189617157 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926880 chr17:4926874 nonsynonymous SNV 0.029 0 15 hm5C_associated_SNPs_35337 0 0 1 0 0 Ribosome 1 0.500231643898268 1 0.999536712203463 hm5C_site_35050 DeepMRMD:1;iRNA_m5C:0.999536712203463 35051 chr17 4926874 4926874 1 + C T SKCM 4926883 + 4926863 4926903 41 CAGCCCGGCCCCCCTCGCCACCACTGTCAAGCTGGGAGCGG CAGCCCGGCCCTCCTCGCCACCACTGTCAAGCTGGGAGCGG < 41bp 1 0.132716061013645 1 0.0350755751132965 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926883 chr17:4926874 nonsynonymous SNV 0.029 0 12 hm5C_associated_SNPs_35339 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_35051 DeepMRMD:1;iRNA_m5C:0.999536712157815 35052 chr22 41913586 41913586 1 + C T SKCM 41913571 + 41913551 41913591 41 ATGGGTGCAGAAATTGGGGCCACCACTTCCGTGTTCCCTTA ATGGGTGCAGAAATTGGGGCCACCACTTCCGTGTTTCCTTA < 41bp 1 0.562400812628737 1 0.396644055843353 experiment 0.875198374742527 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41913571 chr22:41913586 synonymous SNV . 0 36 hm5C_associated_SNPs_35340 0 0 1 0 2 chromatin 1 0.500231643914291 1 0.999536712171417 hm5C_site_35052 DeepMRMD:1;iRNA_m5C:0.999536712171417 35053 chr14 21549984 21549984 1 + C T SKCM 21549971 + 21549951 21549991 41 GTGGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGC GTGGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTTGCCCAGC < 41bp 1 0.463379241134108 1 0.318035960197449 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549971 chr14:21549984 nonsynonymous SNV 0.701 2 34 hm5C_associated_SNPs_35341 0 0 0 0 0 Cytosol 1 0.50023164042784 1 0.99953671914432 hm5C_site_35053 DeepMRMD:1;iRNA_m5C:0.99953671914432 35054 chr14 21549984 21549984 1 + C T SKCM 21549972 + 21549952 21549992 41 TGGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGCC TGGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTTGCCCAGCC < 41bp 1 0.363332167822077 1 0.297066062688828 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549972 chr14:21549984 nonsynonymous SNV 0.701 2 33 hm5C_associated_SNPs_35342 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35054 DeepMRMD:1;iRNA_m5C:0.999536712157815 35055 chr14 21549984 21549984 1 + C T SKCM 21549973 + 21549953 21549993 41 GGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGCCT GGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTTGCCCAGCCT < 41bp 1 0.695833372047978 1 0.427364706993103 experiment 0.608333255904044 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549973 chr14:21549984 nonsynonymous SNV 0.701 2 32 hm5C_associated_SNPs_35343 0 0 0 0 0 Cytosol 1 0.500231643914454 1 0.999536712171093 hm5C_site_35055 DeepMRMD:1;iRNA_m5C:0.999536712171093 35056 chr14 21549984 21549984 1 + C T SKCM 21549974 + 21549954 21549994 41 GAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGCCTC GAGGGGCCCAGTGGGGGCCCCGCAGCCCCTTGCCCAGCCTC < 41bp 1 0.604822873849988 1 0.575359761714935 experiment 0.790354252300023 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549974 chr14:21549984 nonsynonymous SNV 0.701 2 31 hm5C_associated_SNPs_35344 0 0 0 0 0 Cytosol 1 0.500231643921092 0.84928047657013 0.999536712157815 hm5C_site_35056 DeepMRMD:0.84928047657013;iRNA_m5C:0.999536712157815 35057 chr11 75508276 75508276 1 + C T SKCM 75508290 + 75508270 75508310 41 CATCATCGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCA CATCATTGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCA < 41bp 1 0.481919875595418 1 0.400032490491867 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508290 chr11:75508276 synonymous SNV . 0 7 hm5C_associated_SNPs_35345 0 0 1 0 1 Ribosome 1 0.500231643921253 1 0.999536712157494 hm5C_site_35057 DeepMRMD:1;iRNA_m5C:0.999536712157494 35058 chr17 74557741 74557741 1 + C T SKCM 74557758 + 74557738 74557778 41 TCCCTGTCTGAAAATCTGGACTGAGGGAAATAATCTATTCT TCCTTGTCTGAAAATCTGGACTGAGGGAAATAATCTATTCT < 41bp 1 0.279132735984454 1 0.134171396493912 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD1A ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74557758 chr17:74557741 . . 0 4 hm5C_associated_SNPs_35346 0 0 1 0 0 unknown 1 0.500231643172266 1 0.999536713655469 hm5C_site_35058 DeepMRMD:1;iRNA_m5C:0.999536713655469 35059 chr21 40191655 40191655 1 + C T SKCM 40191635 + 40191615 40191655 41 TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACC TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACT < 41bp 1 0.186638329153602 1 0.157156616449356 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191635 chr21:40191655 nonsynonymous SNV 0.999 3 41 hm5C_associated_SNPs_35347 0 0 0 0 1 Ribosome 1 0.500231638059239 1 0.999536723881522 hm5C_site_35059 DeepMRMD:1;iRNA_m5C:0.999536723881522 35060 chr21 40191655 40191655 1 + C T SKCM 40191636 + 40191616 40191656 41 ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCA ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACTA < 41bp 1 0.488427066597394 1 0.518071532249451 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191636 chr21:40191655 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_35348 0 0 0 0 1 Ribosome 1 0.500231643921094 0.963856935501098 0.999536712157813 hm5C_site_35060 DeepMRMD:0.963856935501098;iRNA_m5C:0.999536712157813 35061 chr21 40191655 40191655 1 + C T SKCM 40191637 + 40191617 40191657 41 CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCAG CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACTAG < 41bp 1 0.621370140023186 1 0.813719749450684 experiment 0.757259719953627 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191637 chr21:40191655 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_35349 0 0 0 0 1 Ribosome 1 0.500231638050282 0.372560501098632 0.999536723899437 hm5C_site_35061 DeepMRMD:0.372560501098632;iRNA_m5C:0.999536723899437 35062 chr14 55818526 55818526 1 + C T SKCM 55818536 + 55818516 55818556 41 ATTTTAAACTCCTGTGAAGACCCAGTTCCAGGGATGTTGTT ATTTTAAACTTCTGTGAAGACCCAGTTCCAGGGATGTTGTT < 41bp 1 0.339688085686595 1 0.0558160841464996 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FBXO34 ENSG00000178974 CDS Human protein_coding chr14:55818536 chr14:55818526 nonsynonymous SNV 0.096 0 11 hm5C_associated_SNPs_35350 0 0 1 0 0 Nucleus 1 0.500231643853972 1 0.999536712292055 hm5C_site_35062 DeepMRMD:1;iRNA_m5C:0.999536712292055 35063 chr8 146032829 146032829 1 + C T SKCM 146032809 + 146032789 146032829 41 TGCAGGAAGACCTGGGCCGGCCTGTGGGGAGCTCAGCCCCC TGCAGGAAGACCTGGGCCGGCCTGTGGGGAGCTCAGCCCCT < 41bp 1 0.207226731723675 1 0.233843982219696 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146032809 chr8:146032829 synonymous SNV . 0 41 hm5C_associated_SNPs_35352 0 0 0 0 0 chromatin 1 0.500231643921094 1 0.999536712157812 hm5C_site_35063 DeepMRMD:1;iRNA_m5C:0.999536712157812 35064 chr8 146032829 146032829 1 + C T SKCM 146032810 + 146032790 146032830 41 GCAGGAAGACCTGGGCCGGCCTGTGGGGAGCTCAGCCCCCC GCAGGAAGACCTGGGCCGGCCTGTGGGGAGCTCAGCCCCTC < 41bp 1 0.697612545259914 1 0.674404919147491 experiment 0.604774909480172 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146032810 chr8:146032829 synonymous SNV . 0 40 hm5C_associated_SNPs_35353 0 0 0 0 0 chromatin 1 0.500231636930678 0.651190161705018 0.999536726138644 hm5C_site_35064 DeepMRMD:0.651190161705018;iRNA_m5C:0.999536726138644 35065 chr15 94841674 94841674 1 + C T SKCM 94841673 + 94841653 94841693 41 TGATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCGGC TGATCTCCTGGAGGCTGAGGCTTTGGCCCCAGAGGGCCGGC < 41bp 1 0.366643489332681 1 0.154748678207397 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841673 chr15:94841674 synonymous SNV . 0 22 hm5C_associated_SNPs_35354 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35065 DeepMRMD:1;iRNA_m5C:0.999536712157815 35066 chr6 7580990 7580990 1 + G A SKCM 7580985 + 7580965 7581005 41 GCAGAAAGCAAACAGTAGTGCGACGGAGACAATAAACAAAC GCAGAAAGCAAACAGTAGTGCGACGAAGACAATAAACAAAC < 41bp 1 0.453693106447732 1 0.459630221128464 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7580985 chr6:7580990 nonsynonymous SNV 0.089 1 26 hm5C_associated_SNPs_35355 0 0 1 0 0 Nucleus 1 0.500231643687922 1 0.999536712624156 hm5C_site_35066 DeepMRMD:1;iRNA_m5C:0.999536712624156 35067 chr11 120769326 120769326 1 + C T SKCM 120769341 + 120769321 120769361 41 CACCACCCTGGTCGTCACCACCATCCTGGTAAGTGGGCTCT CACCATCCTGGTCGTCACCACCATCCTGGTAAGTGGGCTCT < 41bp 1 0.0197554003058476 1 0.063030332326889 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120769341 chr11:120769326 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_35356 0 0 0 0 2 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_35067 DeepMRMD:1;iRNA_m5C:0.999536712157815 35068 chr9 135946607 135946607 1 + C T SKCM 135946625 + 135946605 135946645 41 CCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGG CCTCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGG < 41bp 1 0.338089871911105 1 0.342054724693298 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946625 chr9:135946607 nonsynonymous SNV 0.002 3 3 hm5C_associated_SNPs_35358 0 0 0 0 0 exosome 1 0.500231643921153 1 0.999536712157694 hm5C_site_35068 DeepMRMD:1;iRNA_m5C:0.999536712157694 35069 chr9 135946607 135946607 1 + C T SKCM 135946626 + 135946606 135946646 41 CCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGG CTCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGG < 41bp 1 0.486415060957776 1 0.408796072006226 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946626 chr9:135946607 nonsynonymous SNV 0.002 3 2 hm5C_associated_SNPs_35359 0 0 0 0 0 exosome 1 0.500231645118261 1 0.999536709763478 hm5C_site_35069 DeepMRMD:1;iRNA_m5C:0.999536709763478 35070 chr9 129974488 129974488 1 + C T SKCM 129974474 + 129974454 129974494 41 TGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTC TGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACTCTGCTC < 41bp 1 0.58728236543593 1 0.414956092834473 experiment 0.825435269128139 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129974474 chr9:129974488 synonymous SNV . 0 35 hm5C_associated_SNPs_35360 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35070 DeepMRMD:1;iRNA_m5C:0.999536712157815 35071 chr20 33764058 33764058 1 + G A SKCM 33764041 + 33764021 33764061 41 TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGAGAG < 41bp 1 0.691823029398697 1 0.825856804847717 experiment 0.616353941202606 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PROCR ENSG00000101000 CDS Human protein_coding chr20:33764041 chr20:33764058 nonsynonymous SNV 0.691 2 38 hm5C_associated_SNPs_35361 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644044859 0.348286390304566 0.999536711910281 hm5C_site_35071 DeepMRMD:0.348286390304566;iRNA_m5C:0.999536711910281 35072 chrX 73042686 73042686 1 + C T SKCM 73042691 - 73042671 73042711 41 TAGCTGTGATATGTTCGATACTAAGGAAAAACTAAACAGAT TAGCTGTGATATGTTCGATACTAAGAAAAAACTAAACAGAT < 41bp 1 0.13445412375162 1 0.457359939813614 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042691 chrX:73042686 . . 0 26 hm5C_associated_SNPs_35362 0 0 1 0 0 unknown 1 0.500231643210565 1 0.99953671357887 hm5C_site_35072 DeepMRMD:1;iRNA_m5C:0.99953671357887 35073 chr8 144680968 144680968 1 + G A SKCM 144680962 + 144680942 144680982 41 AGCCGCTGGTCATCGGGCGGCTGCCGGACCCGCCCAGCCTG AGCCGCTGGTCATCGGGCGGCTGCCGAACCCGCCCAGCCTG < 41bp 1 0.428352183095352 1 0.743977963924408 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TIGD5 ENSG00000179886 CDS Human protein_coding chr8:144680962 chr8:144680968 nonsynonymous SNV 0.951 2 27 hm5C_associated_SNPs_35363 0 0 1 0 0 Ribosome 1 0.500231643921092 0.512044072151184 0.999536712157815 hm5C_site_35073 DeepMRMD:0.512044072151184;iRNA_m5C:0.999536712157815 35074 chr9 20990235 20990235 1 + T C SKCM 20990218 + 20990198 20990238 41 GCCTCAGTGCCAGTTGGTTGCCATGGCATCAGGAGAATGGC GCCTCAGTGCCAGTTGGTTGCCATGGCATCAGGAGAACGGC < 41bp 1 0.167499200063721 1 0.090839296579361 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990218 chr9:20990235 synonymous SNV . 0 38 hm5C_associated_SNPs_35364 0 0 1 0 0 Ribosome 1 0.500472400525947 1 0.999055198948106 hm5C_site_35074 DeepMRMD:1;iRNA_m5C:0.999055198948106 35075 chr9 20990235 20990235 1 + T C SKCM 20990239 + 20990219 20990259 41 CATGGCATCAGGAGAATGGCCCGGCTGGGCCAGTACCAAGC CATGGCATCAGGAGAACGGCCCGGCTGGGCCAGTACCAAGC < 41bp 1 0.245862093163027 1 0.712515771389008 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990239 chr9:20990235 synonymous SNV . 0 17 hm5C_associated_SNPs_35365 0 0 1 0 0 Ribosome 1 0.500231643921092 0.574968457221984 0.999536712157815 hm5C_site_35075 DeepMRMD:0.574968457221984;iRNA_m5C:0.999536712157815 35076 chr9 20990235 20990235 1 + T C SKCM 20990248 + 20990228 20990268 41 AGGAGAATGGCCCGGCTGGGCCAGTACCAAGCTTCCTTGGC AGGAGAACGGCCCGGCTGGGCCAGTACCAAGCTTCCTTGGC < 41bp 1 0.192791118587549 1 0.0837207734584808 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990248 chr9:20990235 synonymous SNV . 0 8 hm5C_associated_SNPs_35366 0 0 1 0 0 Ribosome 1 0.500231643474466 1 0.999536713051067 hm5C_site_35076 DeepMRMD:1;iRNA_m5C:0.999536713051067 35077 chr9 20990235 20990235 1 + T C SKCM 20990249 + 20990229 20990269 41 GGAGAATGGCCCGGCTGGGCCAGTACCAAGCTTCCTTGGCA GGAGAACGGCCCGGCTGGGCCAGTACCAAGCTTCCTTGGCA < 41bp 1 0.465996475386199 1 0.132165998220444 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990249 chr9:20990235 synonymous SNV . 0 7 hm5C_associated_SNPs_35367 0 0 1 0 0 Ribosome 1 0.500231643921042 1 0.999536712157916 hm5C_site_35077 DeepMRMD:1;iRNA_m5C:0.999536712157916 35078 chr16 624338 624338 1 + C T SKCM 624339 + 624319 624359 41 AGAGCCTGGGTGCTGTCTTCCCCCATGAGCCCTGGCTGCGG AGAGCCTGGGTGCTGTCTTTCCCCATGAGCCCTGGCTGCGG < 41bp 1 0.620125844173095 1 0.725298702716827 experiment 0.75974831165381 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:624339 chr16:624338 synonymous SNV . 0 20 hm5C_associated_SNPs_35368 0 0 1 0 0 Ribosome 1 0.500231643921092 0.549402594566346 0.999536712157816 hm5C_site_35078 DeepMRMD:0.549402594566346;iRNA_m5C:0.999536712157816 35079 chr16 85100875 85100875 1 + G A SKCM 85100859 + 85100839 85100879 41 GAATGACATGGGCGAGTCGCCCTCGCACCCGTCCTGGGACC GAATGACATGGGCGAGTCGCCCTCGCACCCGTCCTGAGACC < 41bp 1 0.110677460244999 1 0.196309775114059 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85100859 chr16:85100875 stopgain 1.000 1 37 hm5C_associated_SNPs_35369 0 0 0 0 0 Nucleus 1 0.500234972194239 1 0.999530055611522 hm5C_site_35079 DeepMRMD:1;iRNA_m5C:0.999530055611522 35080 chr15 91503669 91503669 1 + C A SKCM 91503649 + 91503629 91503669 41 TTCATAGCTGTCCAGCCCTTCCCGGCATTACTGGATCTCCC TTCATAGCTGTCCAGCCCTTCCCGGCATTACTGGATCTCCA < 41bp 1 0.481426727212764 1 0.330952376127243 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91503649 chr15:91503669 nonsynonymous SNV 0.820 3 41 hm5C_associated_SNPs_35370 0 0 1 0 1 Ribosome 1 0.500193483616017 1 0.999613032767966 hm5C_site_35080 DeepMRMD:1;iRNA_m5C:0.999613032767966 35081 chr15 91503669 91503669 1 + C A SKCM 91503678 + 91503658 91503698 41 ACTGGATCTCCCCATGGGCTCAGATGCAGTCAAGGCCAGCT ACTGGATCTCCACATGGGCTCAGATGCAGTCAAGGCCAGCT < 41bp 1 0.452315902364474 1 0.482590287923813 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91503678 chr15:91503669 nonsynonymous SNV 0.820 3 12 hm5C_associated_SNPs_35371 0 0 1 0 1 Ribosome 1 0.500231643918272 1 0.999536712163456 hm5C_site_35081 DeepMRMD:1;iRNA_m5C:0.999536712163456 35082 chr11 67815413 67815413 1 + G A SKCM 67815417 + 67815397 67815437 41 CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC CACCGGTGTCTTCCTGAGACCCTACCCCTTTGGCATCGATC < 41bp 1 0.0115840077188421 1 0.0419726073741913 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815417 chr11:67815413 nonsynonymous SNV 0.999 3 17 hm5C_associated_SNPs_35372 0 0 1 0 2 Nucleus 1 0.500231643918368 1 0.999536712163265 hm5C_site_35082 DeepMRMD:1;iRNA_m5C:0.999536712163265 35083 chr11 67815413 67815413 1 + G A SKCM 67815433 + 67815413 67815453 41 GGACCCTACCCCTTTGGCATCGATCCTGTGAGTCCTGGGAT AGACCCTACCCCTTTGGCATCGATCCTGTGAGTCCTGGGAT < 41bp 1 0.112014486708118 1 0.250919759273529 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815433 chr11:67815413 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_35373 0 0 1 0 2 Nucleus 1 0.500231643042281 1 0.999536713915437 hm5C_site_35083 DeepMRMD:1;iRNA_m5C:0.999536713915437 35084 chr19 18966754 18966754 1 + C T SKCM 18966735 + 18966715 18966755 41 TGCCCCAATGGTGTTGCAGGCCGGTGCTGGTGTGTGCTCCG TGCCCCAATGGTGTTGCAGGCCGGTGCTGGTGTGTGCTCTG < 41bp 1 0.349476135589474 1 0.517578899860382 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966735 chr19:18966754 nonsynonymous SNV 0.042 5 40 hm5C_associated_SNPs_35374 0 0 1 0 1 Nucleus 1 0.500231648951283 0.964842200279236 0.999536702097434 hm5C_site_35084 DeepMRMD:0.964842200279236;iRNA_m5C:0.999536702097434 35085 chr11 67815412 67815412 1 + G A SKCM 67815417 + 67815397 67815437 41 CACCGGTGTCTTCCTGGGACCCTACCCCTTTGGCATCGATC CACCGGTGTCTTCCTAGGACCCTACCCCTTTGGCATCGATC < 41bp 1 0.00872769220970116 1 0.0432409346103668 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815417 chr11:67815412 synonymous SNV . 0 16 hm5C_associated_SNPs_35375 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35085 DeepMRMD:1;iRNA_m5C:0.999536712157815 35086 chr22 32445970 32445970 1 + T G SKCM 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTGCCTGGCAGGCCGAAGTATGGT < 41bp 1 0.210842540941347 1 0.102069288492203 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445970 nonsynonymous SNV 0.999 3 20 hm5C_associated_SNPs_35376 0 0 0 0 2 Nucleus 1 0.500231643924967 1 0.999536712150066 hm5C_site_35086 DeepMRMD:1;iRNA_m5C:0.999536712150066 35087 chr12 112940036 112940036 1 + G T SKCM 112940029 + 112940009 112940049 41 GTGGAGATCAGAGCCCTCTCCCGCCTTGTACTCCAACGCCA GTGGAGATCAGAGCCCTCTCCCGCCTTTTACTCCAACGCCA < 41bp 1 0.314064132464165 1 0.102933615446091 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112940029 chr12:112940036 nonsynonymous SNV 0.998 2 28 hm5C_associated_SNPs_35377 0 0 1 0 1 Ribosome 1 0.50024212053376 1 0.99951575893248 hm5C_site_35087 DeepMRMD:1;iRNA_m5C:0.99951575893248 35088 chr16 89965178 89965178 1 + C T SKCM 89965194 + 89965174 89965214 41 GTCTCGAGCCGGATGAGGACCCCCTCTGCATGCTGCTGCTC GTCTTGAGCCGGATGAGGACCCCCTCTGCATGCTGCTGCTC < 41bp 1 0.251265560816962 1 0.07496577501297 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89965194 chr16:89965178 synonymous SNV . 0 5 hm5C_associated_SNPs_35378 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_35088 DeepMRMD:1;iRNA_m5C:0.999536712157815 35089 chr7 16737780 16737780 1 + C T SKCM 16737766 + 16737746 16737786 41 AATACTGCTACGACAACATCCATTTCATGAAAGCCTTTCAG AATACTGCTACGACAACATCCATTTCATGAAAGCTTTTCAG < 41bp 1 0.0631157935067103 1 0.360406339168549 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BZW2 ENSG00000136261 CDS Human protein_coding chr7:16737766 chr7:16737780 synonymous SNV . 0 35 hm5C_associated_SNPs_35379 0 0 1 0 0 Ribosome 1 0.500227189622515 1 0.99954562075497 hm5C_site_35089 DeepMRMD:1;iRNA_m5C:0.99954562075497 35090 chr11 58919326 58919326 1 + C T SKCM 58919321 + 58919301 58919341 41 AATACCCAGGCTCAAAGATTCCATTCACCTAAGAAAAATCC AATACCCAGGCTCAAAGATTCCATTTACCTAAGAAAAATCC < 41bp 1 0.0755985594250349 1 0.0363872647285461 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM111A ENSG00000166801 CDS Human protein_coding chr11:58919321 chr11:58919326 nonsynonymous SNV 0.393 0 26 hm5C_associated_SNPs_35380 0 0 0 0 0 Nucleus 1 0.500231643920868 1 0.999536712158264 hm5C_site_35090 DeepMRMD:1;iRNA_m5C:0.999536712158264 35091 chr11 13399897 13399897 1 + G A SKCM 13399900 + 13399880 13399920 41 GTAGGTGGCCCAAAGAGGACCCACCCCACTGTTCCAGGGAT GTAGGTGGCCCAAAGAGAACCCACCCCACTGTTCCAGGGAT < 41bp 1 0.131986787660331 1 0.177875816822052 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARNTL ENSG00000133794 CDS Human protein_coding chr11:13399900 chr11:13399897 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_35381 0 0 0 0 1 Cytosol 1 0.500231643900801 1 0.999536712198398 hm5C_site_35091 DeepMRMD:1;iRNA_m5C:0.999536712198398 35092 chr11 13399896 13399896 1 + G A SKCM 13399900 + 13399880 13399920 41 GTAGGTGGCCCAAAGAGGACCCACCCCACTGTTCCAGGGAT GTAGGTGGCCCAAAGAAGACCCACCCCACTGTTCCAGGGAT < 41bp 1 0.106310693069055 1 0.159804254770279 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARNTL ENSG00000133794 CDS Human protein_coding chr11:13399900 chr11:13399896 nonsynonymous SNV 0.996 3 17 hm5C_associated_SNPs_35382 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35092 DeepMRMD:1;iRNA_m5C:0.999536712157815 35093 chr15 99672051 99672051 1 + G A SKCM 99672066 + 99672046 99672086 41 GCAGCGAGCCCGACCGGAGCCAGCCGGTCTGTGAGGCATGT GCAGCAAGCCCGACCGGAGCCAGCCGGTCTGTGAGGCATGT < 41bp 1 0.399329370522294 1 0.313132584095001 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99672066 chr15:99672051 synonymous SNV . 0 6 hm5C_associated_SNPs_35383 0 0 0 0 0 exosome 1 0.50023164387786 1 0.999536712244281 hm5C_site_35093 DeepMRMD:1;iRNA_m5C:0.999536712244281 35094 chr1 87208012 87208012 1 + C T SKCM 87208023 + 87208003 87208043 41 ATCACCTCTCCTTCCAACCTCAGTGACCTTAAGGAGTGTAG ATCACCTCTTCTTCCAACCTCAGTGACCTTAAGGAGTGTAG < 41bp 1 0.307369155764821 1 0.310170620679855 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87208023 chr1:87208012 nonsynonymous SNV 0.997 0 10 hm5C_associated_SNPs_35384 0 0 1 0 0 Ribosome 1 0.500231643916268 1 0.999536712167464 hm5C_site_35094 DeepMRMD:1;iRNA_m5C:0.999536712167464 35095 chr5 140516566 140516566 1 + C T SKCM 140516546 + 140516526 140516566 41 TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTC TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTT < 41bp 1 0.11463944393187 1 0.0505771040916443 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140516546 chr5:140516566 nonsynonymous SNV 0.269 1 41 hm5C_associated_SNPs_35385 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35095 DeepMRMD:1;iRNA_m5C:0.999536712157815 35096 chr9 133355802 133355802 1 + C T SKCM 133355811 + 133355791 133355831 41 CGTATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC CGTATTGACATTGTGGAGAACCGCTTCATTGGAATGAAGTC < 41bp 1 0.105847774987565 1 0.070110023021698 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355811 chr9:133355802 synonymous SNV . 0 12 hm5C_associated_SNPs_35386 1 0 1 0 2 Ribosome 1 0.500231643921344 1 0.999536712157313 hm5C_site_35096 DeepMRMD:1;iRNA_m5C:0.999536712157313 not specified not specified 35097 chr20 3520922 3520922 1 + G A SKCM 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAGAGTGTAGTTAGGACCATTTATATGTTTATGATGG < 41bp 1 0.0263182285419985 1 0.116140246391296 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520922 stopgain 1.000 1 17 hm5C_associated_SNPs_35387 0 0 1 0 2 Ribosome 1 0.500231644404044 1 0.999536711191912 hm5C_site_35097 DeepMRMD:1;iRNA_m5C:0.999536711191912 35098 chr17 7318297 7318297 1 + C T SKCM 7318290 + 7318270 7318310 41 GCCAGGGCTGTTCCAGAAGGCCATCGCCCAGAGTGGCACCG GCCAGGGCTGTTCCAGAAGGCCATCGCTCAGAGTGGCACCG < 41bp 1 0.0290279083562257 1 0.0801794528961182 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7318290 chr17:7318297 synonymous SNV . 0 28 hm5C_associated_SNPs_35388 0 0 1 0 1 chromatin 1 0.500231643959563 1 0.999536712080873 hm5C_site_35098 DeepMRMD:1;iRNA_m5C:0.999536712080873 35099 chr11 67047168 67047168 1 + C T SKCM 67047163 + 67047143 67047183 41 AGAAGCAGGTGCCTCCGGATCTCTTCCAGGTGTGTGCCTCC AGAAGCAGGTGCCTCCGGATCTCTTTCAGGTGTGTGCCTCC < 41bp 1 0.214613204493245 1 0.660452961921692 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047163 chr11:67047168 synonymous SNV . 0 26 hm5C_associated_SNPs_35389 0 0 1 0 2 chromatin 1 0.500231695136213 0.679094076156616 0.999536609727574 hm5C_site_35099 DeepMRMD:0.679094076156616;iRNA_m5C:0.999536609727574 35100 chr18 77063637 77063637 1 + G A SKCM 77063644 + 77063624 77063664 41 ATGATATTTAAGCGGCTGCACCTGGGCACCGTGTCCTATGG ATGATATTTAAGCAGCTGCACCTGGGCACCGTGTCCTATGG < 41bp 1 0.192464375804892 1 0.0965741574764252 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP9B ENSG00000166377 CDS Human protein_coding chr18:77063644 chr18:77063637 nonsynonymous SNV 0.971 2 14 hm5C_associated_SNPs_35390 0 0 0 0 2 Endoplasmic reticulum 1 0.500231646912833 1 0.999536706174335 hm5C_site_35100 DeepMRMD:1;iRNA_m5C:0.999536706174335 35101 chr1 53416510 53416510 1 + G A SKCM 53416511 + 53416491 53416531 41 CAATGTCAACAATAACTGTGCTACTGGTTCTACTGCTTTGT CAATGTCAACAATAACTGTACTACTGGTTCTACTGCTTTGT < 41bp 1 0.216621429703091 1 0.037497341632843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53416511 chr1:53416510 nonsynonymous SNV 0.946 3 20 hm5C_associated_SNPs_35392 0 0 1 1 2 Ribosome 1 0.500231599933833 1 0.999536800132334 hm5C_site_35101 DeepMRMD:1;iRNA_m5C:0.999536800132334 35102 chr2 97464925 97464925 1 + C T SKCM 97464916 + 97464896 97464936 41 AGTACTACGCCCGCCATTACCTGTACACCCGAAATAAGCCG AGTACTACGCCCGCCATTACCTGTACACCTGAAATAAGCCG < 41bp 1 0.565515561950266 1 0.734992504119873 experiment 0.868968876099467 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97464916 chr2:97464925 stopgain 0.997 1 30 hm5C_associated_SNPs_35393 0 0 0 0 1 chromatin 1 0.500231643980432 0.530014991760254 0.999536712039137 hm5C_site_35102 DeepMRMD:0.530014991760254;iRNA_m5C:0.999536712039137 35103 chr13 99042345 99042345 1 + C T SKCM 99042342 + 99042322 99042362 41 AAACCAAAGCCCAAGCCCGTCCTCTTTAGCCGGGGGTCATC AAACCAAAGCCCAAGCCCGTCCTTTTTAGCCGGGGGTCATC < 41bp 1 0.0137735071117974 1 0.0239726901054382 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99042342 chr13:99042345 synonymous SNV . 0 24 hm5C_associated_SNPs_35394 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_35103 DeepMRMD:1;iRNA_m5C:0.999536712157815 35104 chr7 142459860 142459860 1 + A T SKCM 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCTA < 41bp 1 0.378262408189797 1 0.0548449754714966 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459860 nonsynonymous SNV 0.829 5 40 hm5C_associated_SNPs_35395 0 0 0 0 1 Cytosol 1 0.500231642967261 1 0.999536714065477 hm5C_site_35104 DeepMRMD:1;iRNA_m5C:0.999536714065477 35105 chr7 142459860 142459860 1 + A T SKCM 142459842 + 142459822 142459862 41 CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAAC CAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCTAC < 41bp 1 0.51500150544384 1 0.0603898167610168 experiment 0.969996989112321 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459842 chr7:142459860 nonsynonymous SNV 0.829 5 39 hm5C_associated_SNPs_35396 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35105 DeepMRMD:1;iRNA_m5C:0.999536712157815 35106 chr7 142459860 142459860 1 + A T SKCM 142459844 + 142459824 142459864 41 GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAACAC GCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCTACAC < 41bp 1 0.498634649289583 1 0.0240944623947144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459844 chr7:142459860 nonsynonymous SNV 0.829 5 37 hm5C_associated_SNPs_35397 0 0 0 0 1 Cytosol 1 0.500231643630932 1 0.999536712738135 hm5C_site_35106 DeepMRMD:1;iRNA_m5C:0.999536712738135 35107 chr7 142459860 142459860 1 + A T SKCM 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTCTGGCTGGGGCTACACTGCGAGCTCTGGCGGTGA < 41bp 1 0.323073871682512 1 0.128177881240845 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459860 nonsynonymous SNV 0.829 5 19 hm5C_associated_SNPs_35399 0 0 0 0 1 Cytosol 1 0.500231644022854 1 0.999536711954291 hm5C_site_35107 DeepMRMD:1;iRNA_m5C:0.999536711954291 35108 chr7 142459860 142459860 1 + A T SKCM 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTCTGGCTGGGGCTACACTGCGAGCTCTGGCGGTGAGTGGG < 41bp 1 0.418078985439508 1 0.388345301151276 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459860 nonsynonymous SNV 0.829 5 14 hm5C_associated_SNPs_35401 0 0 0 0 1 Cytosol 1 0.500239958908486 1 0.999520082183028 hm5C_site_35108 DeepMRMD:1;iRNA_m5C:0.999520082183028 35109 chr7 142459860 142459860 1 + A T SKCM 142459871 + 142459851 142459891 41 GGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC GGCTGGGGCTACACTGCGAGCTCTGGCGGTGAGTGGGACCC < 41bp 1 0.443312157399715 1 0.213525205850601 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459871 chr7:142459860 nonsynonymous SNV 0.829 5 10 hm5C_associated_SNPs_35402 0 0 0 0 1 Cytosol 1 0.500518311552274 1 0.998963376895451 hm5C_site_35109 DeepMRMD:1;iRNA_m5C:0.998963376895451 35110 chr7 142459860 142459860 1 + A T SKCM 142459873 + 142459853 142459893 41 CTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTT CTGGGGCTACACTGCGAGCTCTGGCGGTGAGTGGGACCCTT < 41bp 1 0.642623737201129 1 0.545746266841888 experiment 0.714752525597741 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459873 chr7:142459860 nonsynonymous SNV 0.829 5 8 hm5C_associated_SNPs_35403 0 0 0 0 1 Cytosol 1 0.500231643935641 0.908507466316224 0.999536712128719 hm5C_site_35110 DeepMRMD:0.908507466316224;iRNA_m5C:0.999536712128719 35111 chr7 142459860 142459860 1 + A T SKCM 142459877 + 142459857 142459897 41 GGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC GGCTACACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC < 41bp 1 0.494973883710453 1 0.852516889572144 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459877 chr7:142459860 nonsynonymous SNV 0.829 5 4 hm5C_associated_SNPs_35404 0 0 0 0 1 Cytosol 1 0.500231643921092 0.294966220855712 0.999536712157815 hm5C_site_35111 DeepMRMD:0.294966220855712;iRNA_m5C:0.999536712157815 35112 chr8 38899578 38899578 1 + C T SKCM 38899577 + 38899557 38899597 41 CTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG CTGATGAAGCCTATAGTGCTCTCTCCTGTGGTAATAAGTTG < 41bp 1 0.228926674045028 1 0.0752636194229126 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899577 chr8:38899578 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_35406 0 0 1 0 1 Ribosome 1 0.500231643557761 1 0.999536712884478 hm5C_site_35112 DeepMRMD:1;iRNA_m5C:0.999536712884478 35113 chr8 38899578 38899578 1 + C T SKCM 38899581 + 38899561 38899601 41 TGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTGGTGG TGAAGCCTATAGTGCTCTCTCCTGTGGTAATAAGTTGGTGG < 41bp 1 0.255622209382995 1 0.60075569152832 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899581 chr8:38899578 nonsynonymous SNV 0.995 4 18 hm5C_associated_SNPs_35407 0 0 1 0 1 Ribosome 1 0.500231643921092 0.79848861694336 0.999536712157817 hm5C_site_35113 DeepMRMD:0.79848861694336;iRNA_m5C:0.999536712157817 35114 chr7 100151725 100151725 1 + C T SKCM 100151721 + 100151701 100151741 41 TCCTTCTCCTCCAAGCCCGTCAGTCAGTCTCACGCTCGGAC TCCTTCTCCTCCAAGCCCGTCAGTTAGTCTCACGCTCGGAC < 41bp 1 0.0629243079653942 1 0.0516005158424377 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100151721 chr7:100151725 stopgain 0.292 1 25 hm5C_associated_SNPs_35408 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_35114 DeepMRMD:1;iRNA_m5C:0.999536712157815 35115 chr11 74329633 74329633 1 + C T SKCM 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTGCCGTCCCTAGAGCTCCTGCTGAATCTTCTTCGTCTT < 41bp 1 0.53463026563384 1 0.0826025009155273 experiment 0.93073946873232 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329633 synonymous SNV . 0 31 hm5C_associated_SNPs_35411 0 0 0 0 1 Nucleus 1 0.500231643920602 1 0.999536712158796 hm5C_site_35115 DeepMRMD:1;iRNA_m5C:0.999536712158796 35116 chr11 74329633 74329633 1 + C T SKCM 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TGCCGTCCCTAGAGCTCCTGCTGAATCTTCTTCGTCTTCCA < 41bp 1 0.683208080825499 1 0.275934338569641 experiment 0.633583838349002 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329633 synonymous SNV . 0 28 hm5C_associated_SNPs_35412 0 0 0 0 1 Nucleus 1 0.500231640403221 1 0.999536719193557 hm5C_site_35116 DeepMRMD:1;iRNA_m5C:0.999536719193557 35117 chr11 74329633 74329633 1 + C T SKCM 74329645 + 74329625 74329665 41 GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA GCTGAATCTTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA < 41bp 1 0.448819869977579 1 0.691096603870392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329645 chr11:74329633 synonymous SNV . 0 9 hm5C_associated_SNPs_35413 0 0 0 0 1 Nucleus 1 0.500232100827491 0.617806792259216 0.999535798345018 hm5C_site_35117 DeepMRMD:0.617806792259216;iRNA_m5C:0.999535798345018 35118 chr7 91714906 91714906 1 + C T SKCM 91714891 + 91714871 91714911 41 TAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAAC TAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTTAGAAC < 41bp 1 0.169681732328315 1 0.178769946098328 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714891 chr7:91714906 nonsynonymous SNV 0.835 0 36 hm5C_associated_SNPs_35414 0 0 1 0 2 Nucleus 1 0.500231644576079 1 0.999536710847841 hm5C_site_35118 DeepMRMD:1;iRNA_m5C:0.999536710847841 35119 chr7 91714906 91714906 1 + C T SKCM 91714912 + 91714892 91714932 41 TATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAG TATTCAGCAGGTTTTAGAACCTTGGCTAGAAGAGAGAAAAG < 41bp 1 0.149014537460457 1 0.119839519262314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714912 chr7:91714906 nonsynonymous SNV 0.835 0 15 hm5C_associated_SNPs_35416 0 0 1 0 2 Nucleus 1 0.500231643912279 1 0.999536712175442 hm5C_site_35119 DeepMRMD:1;iRNA_m5C:0.999536712175442 35120 chr7 91714906 91714906 1 + C T SKCM 91714917 + 91714897 91714937 41 AGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAGCTTAC AGCAGGTTTTAGAACCTTGGCTAGAAGAGAGAAAAGCTTAC < 41bp 1 0.385533366084324 1 0.479815363883972 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714917 chr7:91714906 nonsynonymous SNV 0.835 0 10 hm5C_associated_SNPs_35417 0 0 1 0 2 Nucleus 1 0.500231643920187 1 0.999536712159625 hm5C_site_35120 DeepMRMD:1;iRNA_m5C:0.999536712159625 35121 chr7 73731903 73731903 1 + C T SKCM 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCTCCCGGCCGTGGGGGGAAGCAC < 41bp 1 0.490549223990449 1 0.269927084445953 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731903 synonymous SNV . 0 20 hm5C_associated_SNPs_35418 0 0 0 0 2 Ribosome 1 0.500231644139595 1 0.999536711720809 hm5C_site_35121 DeepMRMD:1;iRNA_m5C:0.999536711720809 35122 chr7 73731903 73731903 1 + C T SKCM 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCTCCCGGCCGTGGGGGGAAGCACT < 41bp 1 0.165057274257724 1 0.381855040788651 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731903 synonymous SNV . 0 19 hm5C_associated_SNPs_35419 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35122 DeepMRMD:1;iRNA_m5C:0.999536712157815 35123 chr7 73731903 73731903 1 + C T SKCM 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCTCCCGGCCGTGGGGGGAAGCACTC < 41bp 1 0.490749762625719 1 0.421623945236206 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731903 synonymous SNV . 0 18 hm5C_associated_SNPs_35420 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_35123 DeepMRMD:1;iRNA_m5C:0.999536712157816 35124 chr1 23236961 23236961 1 + G A SKCM 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGACAGAAGGACCGCAACCACCGGCCCAAGTTC < 41bp 1 0.481018421952273 1 0.451445817947388 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236961 stopgain 1.000 1 11 hm5C_associated_SNPs_35421 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392095 1 0.999536712158101 hm5C_site_35124 DeepMRMD:1;iRNA_m5C:0.999536712158101 35125 chr1 233514958 233514958 1 + G A SKCM 233514944 + 233514924 233514964 41 TGGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG TGGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGAGACTGG < 41bp 1 0.262472114178702 1 0.0703678727149963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233514944 chr1:233514958 nonsynonymous SNV 0.301 4 35 hm5C_associated_SNPs_35422 0 0 1 0 0 unknown 1 0.500231683743833 1 0.999536632512334 hm5C_site_35125 DeepMRMD:1;iRNA_m5C:0.999536632512334 35126 chr8 32613921 32613921 1 + G A SKCM 32613925 + 32613905 32613945 41 CCTTTCTTATGTCCAGGAAACAGCGGAAAAAGCTGCATGAC CCTTTCTTATGTCCAGAAAACAGCGGAAAAAGCTGCATGAC < 41bp 1 0.607854964373818 1 0.749634981155396 experiment 0.784290071252364 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NRG1 ENSG00000157168 CDS Human protein_coding chr8:32613925 chr8:32613921 synonymous SNV . 0 17 hm5C_associated_SNPs_35423 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 0.500730037689208 0.999536712157815 hm5C_site_35126 DeepMRMD:0.500730037689208;iRNA_m5C:0.999536712157815 35127 chr7 142460720 142460720 1 + G A SKCM 142460726 + 142460706 142460746 41 TTCTTCCCCCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCA TTCTTCCCCCCAGGATGATTCTGGTGGCCCTGTGGTCTGCA < 41bp 1 0.579759023723824 1 0.502302885055542 experiment 0.840481952552353 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460726 chr7:142460720 nonsynonymous SNV 0.080 4 15 hm5C_associated_SNPs_35424 0 0 0 0 0 Cytosol 1 0.500231643921092 0.995394229888916 0.999536712157815 hm5C_site_35127 DeepMRMD:0.995394229888916;iRNA_m5C:0.999536712157815 35128 chr7 142460720 142460720 1 + G A SKCM 142460733 + 142460713 142460753 41 CCCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACA CCCCAGGATGATTCTGGTGGCCCTGTGGTCTGCAATGGACA < 41bp 1 0.0847077628267282 1 0.0678680241107941 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460733 chr7:142460720 nonsynonymous SNV 0.080 4 8 hm5C_associated_SNPs_35425 0 0 0 0 0 Cytosol 1 0.500231643931533 1 0.999536712136933 hm5C_site_35128 DeepMRMD:1;iRNA_m5C:0.999536712136933 35129 chr7 142460720 142460720 1 + G A SKCM 142460734 + 142460714 142460754 41 CCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAG CCCAGGATGATTCTGGTGGCCCTGTGGTCTGCAATGGACAG < 41bp 1 0.123811645464811 1 0.0864241421222687 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460734 chr7:142460720 nonsynonymous SNV 0.080 4 7 hm5C_associated_SNPs_35426 0 0 0 0 0 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_35129 DeepMRMD:1;iRNA_m5C:0.999536712157818 35130 chr7 142460720 142460720 1 + G A SKCM 142460735 + 142460715 142460755 41 CCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGC CCAGGATGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGC < 41bp 1 0.426065519918645 1 0.149999916553497 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460735 chr7:142460720 nonsynonymous SNV 0.080 4 6 hm5C_associated_SNPs_35427 0 0 0 0 0 Cytosol 1 0.500231385116041 1 0.999537229767917 hm5C_site_35130 DeepMRMD:1;iRNA_m5C:0.999537229767917 35131 chr11 57575908 57575908 1 + C T SKCM 57575904 + 57575884 57575924 41 CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC CTCTGCGTCAAGAGAAGGCTCTTTTTGCCATAGCTGACCTC < 41bp 1 0.117335575345385 1 0.0563799440860748 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575904 chr11:57575908 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_35428 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35131 DeepMRMD:1;iRNA_m5C:0.999536712157815 35132 chr12 122079087 122079087 1 + C T SKCM 122079102 + 122079082 122079122 41 AACATCGAGGCGGTGAGCAACGTGCACAATCTCAACTCGGT AACATTGAGGCGGTGAGCAACGTGCACAATCTCAACTCGGT < 41bp 1 0.163428460271746 1 0.124203652143478 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ORAI1 ENSG00000182500 CDS Human other chr12:122079102 chr12:122079087 synonymous SNV . 0 6 hm5C_associated_SNPs_35429 0 0 0 0 0 Endoplasmic reticulum 1 0.500231646889588 1 0.999536706220824 hm5C_site_35132 DeepMRMD:1;iRNA_m5C:0.999536706220824 35133 chr11 65824770 65824770 1 + C T SKCM 65824781 + 65824761 65824801 41 GCCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCC GCCCCACTCTTACAGTTTTGCCCATGGGAGCCCCTGTTCCC < 41bp 1 0.388695780454455 1 0.103326559066772 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824781 chr11:65824770 nonsynonymous SNV 0.978 0 10 hm5C_associated_SNPs_35431 0 0 1 0 2 Nucleus 1 0.500231643921262 1 0.999536712157476 hm5C_site_35133 DeepMRMD:1;iRNA_m5C:0.999536712157476 35134 chr11 65824770 65824770 1 + C T SKCM 65824782 + 65824762 65824802 41 CCCCACTCCTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC CCCCACTCTTACAGTTTTGCCCATGGGAGCCCCTGTTCCCC < 41bp 1 0.307935376179939 1 0.199478954076767 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65824782 chr11:65824770 nonsynonymous SNV 0.978 0 9 hm5C_associated_SNPs_35432 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35134 DeepMRMD:1;iRNA_m5C:0.999536712157815 35135 chr1 23236960 23236960 1 + G A SKCM 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTAGCAGAAGGACCGCAACCACCGGCCCAAGTTC < 41bp 1 0.44295402861837 1 0.383535772562027 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236960 stopgain 1.000 1 10 hm5C_associated_SNPs_35433 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643917718 1 0.999536712164564 hm5C_site_35135 DeepMRMD:1;iRNA_m5C:0.999536712164564 35136 chr11 74329632 74329632 1 + C T SKCM 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTGCCGTCCCTAGAGCTCCTGCTGAATTCTCTTCGTCTT < 41bp 1 0.554888030119554 1 0.146553546190262 experiment 0.890223939760892 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329632 nonsynonymous SNV 0.994 0 30 hm5C_associated_SNPs_35435 0 0 0 0 1 Nucleus 1 0.500231645534878 1 0.999536708930245 hm5C_site_35136 DeepMRMD:1;iRNA_m5C:0.999536708930245 35137 chr11 74329632 74329632 1 + C T SKCM 74329633 + 74329613 74329653 41 CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT CCTAGAGCTCCTGCTGAATTCTCTTCGTCTTCCAAAAAGTT < 41bp 1 0.170979452223797 1 0.153605729341507 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329633 chr11:74329632 nonsynonymous SNV 0.994 0 20 hm5C_associated_SNPs_35437 0 0 0 0 1 Nucleus 1 0.500231643920508 1 0.999536712158984 hm5C_site_35137 DeepMRMD:1;iRNA_m5C:0.999536712158984 35138 chr11 74329632 74329632 1 + C T SKCM 74329645 + 74329625 74329665 41 GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA GCTGAATTCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA < 41bp 1 0.484975710150255 1 0.717524528503418 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329645 chr11:74329632 nonsynonymous SNV 0.994 0 8 hm5C_associated_SNPs_35438 0 0 0 0 1 Nucleus 1 0.500231657773006 0.564950942993164 0.999536684453988 hm5C_site_35138 DeepMRMD:0.564950942993164;iRNA_m5C:0.999536684453988 35139 chrX 73046120 73046120 1 + C T SKCM 73046118 - 73046098 73046138 41 TTGACCCCAGAAGCCCTAGACTGAGAAGATAAAATGGTCAG TTGACCCCAGAAGCCCTAAACTGAGAAGATAAAATGGTCAG < 41bp 1 0.346344836861569 1 0.377483904361725 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046118 chrX:73046120 . . 0 19 hm5C_associated_SNPs_35439 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_35139 DeepMRMD:1;iRNA_m5C:0.999536712157815 35140 chrX 73046120 73046120 1 + C T SKCM 73046124 - 73046104 73046144 41 TTTCTTTTGACCCCAGAAGCCCTAGACTGAGAAGATAAAAT TTTCTTTTGACCCCAGAAGCCCTAAACTGAGAAGATAAAAT < 41bp 1 0.0242324311475277 1 0.152468085289001 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046124 chrX:73046120 . . 0 25 hm5C_associated_SNPs_35440 0 0 1 0 0 unknown 1 0.500231644856212 1 0.999536710287576 hm5C_site_35140 DeepMRMD:1;iRNA_m5C:0.999536710287576 35141 chrX 73046120 73046120 1 + C T SKCM 73046131 - 73046111 73046151 41 TCAGTCCTTTCTTTTGACCCCAGAAGCCCTAGACTGAGAAG TCAGTCCTTTCTTTTGACCCCAGAAGCCCTAAACTGAGAAG < 41bp 1 0.210677166417483 1 0.378220975399017 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046131 chrX:73046120 . . 0 32 hm5C_associated_SNPs_35441 0 0 1 0 0 unknown 1 0.500231644024754 1 0.999536711950492 hm5C_site_35141 DeepMRMD:1;iRNA_m5C:0.999536711950492 35142 chrX 73046120 73046120 1 + C T SKCM 73046132 - 73046112 73046152 41 TTCAGTCCTTTCTTTTGACCCCAGAAGCCCTAGACTGAGAA TTCAGTCCTTTCTTTTGACCCCAGAAGCCCTAAACTGAGAA < 41bp 1 0.126642771323361 1 0.274450749158859 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046132 chrX:73046120 . . 0 33 hm5C_associated_SNPs_35442 0 0 1 0 0 unknown 1 0.50023143075099 1 0.99953713849802 hm5C_site_35142 DeepMRMD:1;iRNA_m5C:0.99953713849802 35143 chr19 46202120 46202120 1 + C T SKCM 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCTTCGCACGGTCCGCTGGTTCCATCGGC < 41bp 1 0.133174102736588 1 0.606796681880951 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202120 nonsynonymous SNV 0.634 0 15 hm5C_associated_SNPs_35443 0 0 1 0 2 chromatin 1 0.500231643921092 0.786406636238098 0.999536712157815 hm5C_site_35143 DeepMRMD:0.786406636238098;iRNA_m5C:0.999536712157815 35144 chr7 142458429 142458429 1 + G A SKCM 142458409 + 142458389 142458429 41 TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATG TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATA < 41bp 1 0.0582544164602052 1 0.0958439409732819 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458409 chr7:142458429 nonsynonymous SNV 0.871 5 41 hm5C_associated_SNPs_35444 0 0 0 0 1 Cytosol 1 0.500232203903901 1 0.999535592192197 hm5C_site_35144 DeepMRMD:1;iRNA_m5C:0.999535592192197 35145 chr7 142458429 142458429 1 + G A SKCM 142458412 + 142458392 142458432 41 CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACA CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATAACA < 41bp 1 0.0184634465822006 1 0.254642307758331 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458412 chr7:142458429 nonsynonymous SNV 0.871 5 38 hm5C_associated_SNPs_35445 0 0 0 0 1 Cytosol 1 0.500231643921329 1 0.999536712157342 hm5C_site_35145 DeepMRMD:1;iRNA_m5C:0.999536712157342 35146 chr7 142458429 142458429 1 + G A SKCM 142458413 + 142458393 142458433 41 ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAA ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATAACAA < 41bp 1 0.049583649294394 1 0.189281851053238 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458413 chr7:142458429 nonsynonymous SNV 0.871 5 37 hm5C_associated_SNPs_35446 0 0 0 0 1 Cytosol 1 0.500231655701996 1 0.999536688596007 hm5C_site_35146 DeepMRMD:1;iRNA_m5C:0.999536688596007 35147 chr7 142458429 142458429 1 + G A SKCM 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATAACAAG < 41bp 1 0.0255795551390057 1 0.1535624563694 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458429 nonsynonymous SNV 0.871 5 36 hm5C_associated_SNPs_35447 0 0 0 0 1 Cytosol 1 0.500231641069759 1 0.999536717860481 hm5C_site_35147 DeepMRMD:1;iRNA_m5C:0.999536717860481 35148 chr7 142458429 142458429 1 + G A SKCM 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATAACAAGA < 41bp 1 0.00275225025977448 1 0.0980543494224548 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458429 nonsynonymous SNV 0.871 5 35 hm5C_associated_SNPs_35448 0 0 0 0 1 Cytosol 1 0.500231696261628 1 0.999536607476743 hm5C_site_35148 DeepMRMD:1;iRNA_m5C:0.999536607476743 35149 chr7 142458429 142458429 1 + G A SKCM 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGCTGCCCCCTTTGATGATGATAACAAGAT < 41bp 1 0.0421925823846997 1 0.0850617289543152 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458429 nonsynonymous SNV 0.871 5 34 hm5C_associated_SNPs_35449 0 0 0 0 1 Cytosol 1 0.500231681138878 1 0.999536637722245 hm5C_site_35149 DeepMRMD:1;iRNA_m5C:0.999536637722245 35150 chr7 142458429 142458429 1 + G A SKCM 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATAACAAGATCGTTGGGGGCTACAACTGTGA < 41bp 1 0.165978874445195 1 0.109288901090622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458429 nonsynonymous SNV 0.871 5 13 hm5C_associated_SNPs_35451 0 0 0 0 1 Cytosol 1 0.500231644075424 1 0.999536711849153 hm5C_site_35150 DeepMRMD:1;iRNA_m5C:0.999536711849153 35151 chr7 142458429 142458429 1 + G A SKCM 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATAACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.334308375645733 1 0.532254040241241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458429 nonsynonymous SNV 0.871 5 4 hm5C_associated_SNPs_35452 0 0 0 0 1 Cytosol 1 0.500231644406394 0.935491919517518 0.999536711187213 hm5C_site_35151 DeepMRMD:0.935491919517518;iRNA_m5C:0.999536711187213 35152 chr7 142458429 142458429 1 + G A SKCM 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT AACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT < 41bp 1 0.168853892623597 1 0.262254357337952 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458429 nonsynonymous SNV 0.871 5 1 hm5C_associated_SNPs_35453 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35152 DeepMRMD:1;iRNA_m5C:0.999536712157815 35153 chr2 192141644 192141644 1 + C T SKCM 192141649 + 192141629 192141669 41 AAATGGAGGTGAAAACCTCACTTCTGGACAATATGATTGGA AAATGGAGGTGAAAATCTCACTTCTGGACAATATGATTGGA < 41bp 1 0.232869853868872 1 0.163124173879623 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141649 chr2:192141644 nonsynonymous SNV 0.886 2 16 hm5C_associated_SNPs_35454 0 0 1 0 1 Nucleus 1 0.500231643992102 1 0.999536712015795 hm5C_site_35153 DeepMRMD:1;iRNA_m5C:0.999536712015795 35154 chr1 161132151 161132151 1 + G A SKCM 161132159 + 161132139 161132179 41 AAGAGGTGCCTGGAGGAGGCCGAGCCCAAGAGCTCACTGAA AAGAGGTGCCTGAAGGAGGCCGAGCCCAAGAGCTCACTGAA < 41bp 1 0.366460177609913 1 0.659542858600616 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161132159 chr1:161132151 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_35455 0 0 1 0 2 Cytosol 1 0.500231643921046 0.680914282798768 0.999536712157908 hm5C_site_35154 DeepMRMD:0.680914282798768;iRNA_m5C:0.999536712157908 35155 chr11 67079288 67079288 1 + C T SKCM 67079295 + 67079275 67079315 41 CCCTGCATTTCCTCTACGCCCAGGTTCCGGAAGGTGGTGAG CCCTGCATTTCCTTTACGCCCAGGTTCCGGAAGGTGGTGAG < 41bp 1 0.61713380794572 1 0.424531221389771 experiment 0.765732384108561 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67079295 chr11:67079288 nonsynonymous SNV 0.006 3 14 hm5C_associated_SNPs_35456 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35155 DeepMRMD:1;iRNA_m5C:0.999536712157815 35156 chr10 118306862 118306862 1 + G A SKCM 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAAGAATTAC < 41bp 1 0.28616276564587 1 0.0694632828235626 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306862 nonsynonymous SNV 0.862 4 34 hm5C_associated_SNPs_35458 0 0 0 0 2 unknown 1 0.500232575854375 1 0.99953484829125 hm5C_site_35156 DeepMRMD:1;iRNA_m5C:0.99953484829125 35157 chr10 118306862 118306862 1 + G A SKCM 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGACTCCCCATGGTCAAGAATTACGG < 41bp 1 0.68841249510243 1 0.287232339382172 experiment 0.623175009795141 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306862 nonsynonymous SNV 0.862 4 32 hm5C_associated_SNPs_35459 0 0 0 0 2 unknown 1 0.50023164416876 1 0.99953671166248 hm5C_site_35157 DeepMRMD:1;iRNA_m5C:0.99953671166248 35158 chr10 118306862 118306862 1 + G A SKCM 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCATGGTCAAGAATTACGGAA < 41bp 1 0.277567896010452 1 0.237743526697159 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306862 nonsynonymous SNV 0.862 4 30 hm5C_associated_SNPs_35460 0 0 0 0 2 unknown 1 0.500227056835179 1 0.999545886329642 hm5C_site_35158 DeepMRMD:1;iRNA_m5C:0.999545886329642 35159 chr10 118306862 118306862 1 + G A SKCM 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCATGGTCAAGAATTACGGAAA < 41bp 1 0.547814259651308 1 0.54872453212738 experiment 0.904371480697384 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306862 nonsynonymous SNV 0.862 4 29 hm5C_associated_SNPs_35461 0 0 0 0 2 unknown 1 0.500231643921092 0.90255093574524 0.999536712157815 hm5C_site_35159 DeepMRMD:0.90255093574524;iRNA_m5C:0.999536712157815 35160 chr19 1278944 1278944 1 + C T SKCM 1278943 + 1278923 1278963 41 CCTTTTGGAACCTGCACAGCCCGCCGACCTGTTGCCACCTG CCTTTTGGAACCTGCACAGCCTGCCGACCTGTTGCCACCTG < 41bp 1 0.670702277744726 1 0.157398849725723 experiment 0.658595444510548 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C19orf24 ENSG00000228300 CDS Human protein_coding chr19:1278943 chr19:1278944 synonymous SNV . 0 22 hm5C_associated_SNPs_35462 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35160 DeepMRMD:1;iRNA_m5C:0.999536712157815 35161 chr1 155288061 155288061 1 + C T SKCM 155288044 + 155288024 155288064 41 TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAATCTG < 41bp 1 0.246411179516687 1 0.172120302915573 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155288044 chr1:155288061 synonymous SNV . 0 38 hm5C_associated_SNPs_35463 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35161 DeepMRMD:1;iRNA_m5C:0.999536712157815 35162 chr20 57466805 57466805 1 + G A SKCM 57466815 + 57466795 57466835 41 GGAACAGTAAGACCGAGGACCAGCGCAACGAGGAGAAGGCG GGAACAGTAAAACCGAGGACCAGCGCAACGAGGAGAAGGCG < 41bp 1 0.471315590242293 1 0.755493760108948 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57466815 chr20:57466805 synonymous SNV . 0 11 hm5C_associated_SNPs_35464 0 0 1 0 0 Cytosol 1 0.500231643512301 0.489012479782104 0.999536712975399 hm5C_site_35162 DeepMRMD:0.489012479782104;iRNA_m5C:0.999536712975399 35163 chr20 57466805 57466805 1 + G A SKCM 57466818 + 57466798 57466838 41 ACAGTAAGACCGAGGACCAGCGCAACGAGGAGAAGGCGCAG ACAGTAAAACCGAGGACCAGCGCAACGAGGAGAAGGCGCAG < 41bp 1 0.58949027356313 1 0.540144801139832 experiment 0.821019452873741 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57466818 chr20:57466805 synonymous SNV . 0 8 hm5C_associated_SNPs_35465 0 0 1 0 0 Cytosol 1 0.500231643920874 0.919710397720336 0.999536712158252 hm5C_site_35163 DeepMRMD:0.919710397720336;iRNA_m5C:0.999536712158252 35164 chr20 1902320 1902320 1 + C T SKCM 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACGTCACCTTGCAGGGGGACCTTCTTCGTGGGACTGCCAAC < 41bp 1 0.1827126068374 1 0.0177505910396576 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902320 nonsynonymous SNV 0.279 1 22 hm5C_associated_SNPs_35466 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_35164 DeepMRMD:1;iRNA_m5C:0.999536712157813 35165 chr20 57480491 57480491 1 + C A SKCM 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGAGTGCGTGCCTGATACGAACGCTCCAACGA < 41bp 1 0.42268337931938 1 0.166440695524216 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480491 stopgain 0.987 1 24 hm5C_associated_SNPs_35467 0 0 1 2 2 Cytosol 1 0.500237882060157 1 0.999524235879685 hm5C_site_35165 DeepMRMD:1;iRNA_m5C:0.999524235879685 35166 chr6 33411314 33411314 1 + C T SKCM 33411295 + 33411275 33411315 41 TAGCAAGAGTGAGGACCTCTCTTCCGGGGTCCCCAAGCCCC TAGCAAGAGTGAGGACCTCTCTTCCGGGGTCCCCAAGCCTC < 41bp 1 0.205200088085914 1 0.177944183349609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33411295 chr6:33411314 synonymous SNV . 0 40 hm5C_associated_SNPs_35468 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35166 DeepMRMD:1;iRNA_m5C:0.999536712157815 35167 chr10 103919292 103919292 1 + G A SKCM 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGACGAGGAAAAGGAGCAAAAAAAACCCATGAAAAAT < 41bp 1 0.546068684939631 1 0.576017022132874 experiment 0.907862630120738 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919292 nonsynonymous SNV 0.863 1 15 hm5C_associated_SNPs_35469 0 0 1 0 1 Nucleus 1 0.500231643920887 0.847965955734252 0.999536712158225 hm5C_site_35167 DeepMRMD:0.847965955734252;iRNA_m5C:0.999536712158225 35168 chr7 138944071 138944071 1 + G A SKCM 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGAGGAAAAG < 41bp 1 0.472231861656889 1 0.595632433891296 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944071 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_35470 0 0 1 0 2 Cytosol 1 0.500231643921094 0.808735132217408 0.999536712157812 hm5C_site_35168 DeepMRMD:0.808735132217408;iRNA_m5C:0.999536712157812 35169 chr2 220505217 220505217 1 + C T SKCM 220505231 + 220505211 220505251 41 ATCTTCCTGTACATGGGGGTCACGTCCCTGTCTGGTATCCA ATCTTCTTGTACATGGGGGTCACGTCCCTGTCTGGTATCCA < 41bp 1 0.232120069531822 1 0.0348409414291382 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505231 chr2:220505217 synonymous SNV . 0 7 hm5C_associated_SNPs_35471 0 0 0 0 1 Cytosol 1 0.500231637231138 1 0.999536725537724 hm5C_site_35169 DeepMRMD:1;iRNA_m5C:0.999536725537724 35170 chr1 109814029 109814029 1 + C T SKCM 109814010 + 109813990 109814030 41 GCCTGTCCCTATCCCCAGCTCGGGCCTGCAGCCCTCCTTCG GCCTGTCCCTATCCCCAGCTCGGGCCTGCAGCCCTCCTTTG < 41bp 1 0.467989215683033 1 0.726339817047119 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109814010 chr1:109814029 synonymous SNV . 0 40 hm5C_associated_SNPs_35472 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.547320365905762 0.999536712157815 hm5C_site_35170 DeepMRMD:0.547320365905762;iRNA_m5C:0.999536712157815 35171 chr11 65271911 65271911 1 + A G SKCM 65271929 + 65271909 65271949 41 GTATGATTAAAAGTTGTGTTCCCCAATGCTTGGAGTAGTGA GTGTGATTAAAAGTTGTGTTCCCCAATGCTTGGAGTAGTGA < 41bp 1 0.37598893887521 1 0.083499401807785 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271929 chr11:65271911 . . 0 3 hm5C_associated_SNPs_35473 0 0 1 2 0 unknown 1 0.50023201897871 1 0.99953596204258 hm5C_site_35171 DeepMRMD:1;iRNA_m5C:0.99953596204258 35172 chr11 65386194 65386194 1 + C T SKCM 65386204 + 65386184 65386224 41 TCCTGCTACTCCCCTGAGAGCTCCCGGGGTGCAGCAGGGGG TCCTGCTACTTCCCTGAGAGCTCCCGGGGTGCAGCAGGGGG < 41bp 1 0.247469810616264 1 0.196615755558014 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65386204 chr11:65386194 nonsynonymous SNV 0.990 3 11 hm5C_associated_SNPs_35474 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35172 DeepMRMD:1;iRNA_m5C:0.999536712157815 35173 chr2 32773047 32773047 1 + G A SKCM 32773028 + 32773008 32773048 41 CTTCTGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGG CTTCTGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAAG < 41bp 1 0.169326864577843 1 0.517087936401367 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773028 chr2:32773047 nonsynonymous SNV 0.998 2 40 hm5C_associated_SNPs_35475 0 0 0 0 1 Nucleus 1 0.500231643921092 0.965824127197266 0.999536712157815 hm5C_site_35173 DeepMRMD:0.965824127197266;iRNA_m5C:0.999536712157815 35174 chr2 32773047 32773047 1 + G A SKCM 32773033 + 32773013 32773053 41 GGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGGCTGGA GGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAAGCTGGA < 41bp 1 0.196286677897664 1 0.127960860729218 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773033 chr2:32773047 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_35476 0 0 0 0 1 Nucleus 1 0.500231643921892 1 0.999536712156216 hm5C_site_35174 DeepMRMD:1;iRNA_m5C:0.999536712156216 35175 chr2 32773047 32773047 1 + G A SKCM 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TGGAACAAGCCTTAACTAAGCAAAAGCTGGAAGAGGAACAT < 41bp 1 0.255131833169323 1 0.588387191295624 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773047 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_35477 0 0 0 0 1 Nucleus 1 0.500231645879296 0.823225617408752 0.999536708241408 hm5C_site_35175 DeepMRMD:0.823225617408752;iRNA_m5C:0.999536708241408 35176 chr20 47567936 47567936 1 + T A SKCM 47567952 + 47567932 47567972 41 AGAATTGTTGAAACCATTTGCAGTTGTTTTCAGGGCCCTCA AGAAATGTTGAAACCATTTGCAGTTGTTTTCAGGGCCCTCA < 41bp 1 0.296461640503191 1 0.416374683380127 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47567952 chr20:47567936 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_35478 0 0 1 0 2 Cytosol 1 0.50023166728727 1 0.99953666542546 hm5C_site_35176 DeepMRMD:1;iRNA_m5C:0.99953666542546 35177 chr14 104642788 104642788 1 + C T SKCM 104642772 + 104642752 104642792 41 CCTCCCCCGGAAACCGAGGACTGCCTCTGCCACCACCCGTG CCTCCCCCGGAAACCGAGGACTGCCTCTGCCACCACTCGTG < 41bp 1 0.175037044013409 1 0.0485526025295258 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642772 chr14:104642788 synonymous SNV . 0 37 hm5C_associated_SNPs_35480 0 0 1 0 0 Ribosome 1 0.500231643978819 1 0.999536712042363 hm5C_site_35177 DeepMRMD:1;iRNA_m5C:0.999536712042363 35178 chr7 130020994 130020994 1 + G A SKCM 130021005 + 130020985 130021025 41 AAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG AAGGTGAAGAAGCTGGAGGACCTGGAGCACCTGCAGGTCAG < 41bp 1 0.355374865747476 1 0.100713729858398 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021005 chr7:130020994 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_35481 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35178 DeepMRMD:1;iRNA_m5C:0.999536712157815 35179 chr7 130020994 130020994 1 + G A SKCM 130021012 + 130020992 130021032 41 AGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGG AGAAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGG < 41bp 1 0.286563501726909 1 0.208452641963959 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021012 chr7:130020994 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_35482 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643919046 1 0.999536712161909 hm5C_site_35179 DeepMRMD:1;iRNA_m5C:0.999536712161909 35180 chr7 130020994 130020994 1 + G A SKCM 130021014 + 130020994 130021034 41 GAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGA AAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGA < 41bp 1 0.137869021336279 1 0.199990659952164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021014 chr7:130020994 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_35483 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643549419 1 0.999536712901163 hm5C_site_35180 DeepMRMD:1;iRNA_m5C:0.999536712901163 35181 chr1 110766321 110766321 1 + G A SKCM 110766341 + 110766321 110766361 41 GTCAACAACTTCGGCATGTACTACTCCCTGGCCATGGCCAA ATCAACAACTTCGGCATGTACTACTCCCTGGCCATGGCCAA < 41bp 1 0.299446272756632 1 0.0395335555076599 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110766341 chr1:110766321 nonsynonymous SNV 0.999 5 1 hm5C_associated_SNPs_35484 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35181 DeepMRMD:1;iRNA_m5C:0.999536712157815 35182 chr22 30403281 30403281 1 + G A SKCM 30403290 + 30403270 30403310 41 ACTTTCCCAATGGGGGAGACCTTTCTGACGTGGAGTTCGGT ACTTTCCCAATAGGGGAGACCTTTCTGACGTGGAGTTCGGT < 41bp 1 0.0180729557735528 1 0.0812144577503204 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30403290 chr22:30403281 nonsynonymous SNV 0.980 2 12 hm5C_associated_SNPs_35485 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35182 DeepMRMD:1;iRNA_m5C:0.999536712157815 35183 chr7 892478 892478 1 + C T SKCM 892492 + 892472 892512 41 CAATTTCTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA CAATTTTTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA < 41bp 1 0.255751624078082 1 0.0706012845039368 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:892492 chr7:892478 synonymous SNV . 0 7 hm5C_associated_SNPs_35487 0 0 1 0 2 Endoplasmic reticulum 1 0.500240153175716 1 0.999519693648567 hm5C_site_35183 DeepMRMD:1;iRNA_m5C:0.999519693648567 35184 chr22 38321962 38321962 1 + C T SKCM 38321955 + 38321935 38321975 41 GGGCCACCCGGAGTCCACACCCAAGTCCCTGCACCCCTGGT GGGCCACCCGGAGTCCACACCCAAGTCTCTGCACCCCTGGT < 41bp 1 0.152533170804728 1 0.244987159967422 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38321955 chr22:38321962 synonymous SNV . 0 28 hm5C_associated_SNPs_35488 0 0 0 0 1 Ribosome 1 0.500231643923042 1 0.999536712153916 hm5C_site_35184 DeepMRMD:1;iRNA_m5C:0.999536712153916 35185 chr11 20077471 20077471 1 + G T SKCM 20077463 + 20077443 20077483 41 CTGGATGAGAAGAGCAGAACCATGAGCCGTTCAGGCTCATT CTGGATGAGAAGAGCAGAACCATGAGCCTTTCAGGCTCATT < 41bp 1 0.367042211963463 1 0.472417086362839 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20077463 chr11:20077471 nonsynonymous SNV 0.956 4 29 hm5C_associated_SNPs_35489 0 0 0 0 1 Nucleus 1 0.500231643918883 1 0.999536712162234 hm5C_site_35185 DeepMRMD:1;iRNA_m5C:0.999536712162234 35186 chr10 103310563 103310563 1 + C T SKCM 103310555 + 103310535 103310575 41 TCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACCC TCTGGGACTTCCTAAATGATCCAGCTGCTCAAGCTGAACCC < 41bp 1 0.361051576867088 1 0.407195329666138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103310555 chr10:103310563 synonymous SNV . 0 29 hm5C_associated_SNPs_35490 0 0 1 0 1 chromatin 1 0.500218785885537 1 0.999562428228926 hm5C_site_35186 DeepMRMD:1;iRNA_m5C:0.999562428228926 35187 chr16 601532 601532 1 + C T SKCM 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCCGAAACCTGTGGGGCCGTTTCTCCTGGAACGGCAGC < 41bp 1 0.0267018287000939 1 0.0684864521026611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601532 nonsynonymous SNV 0.975 5 13 hm5C_associated_SNPs_35491 0 0 1 0 1 chromatin 1 0.500231643280358 1 0.999536713439285 hm5C_site_35187 DeepMRMD:1;iRNA_m5C:0.999536713439285 35188 chr16 601532 601532 1 + C T SKCM 601547 + 601527 601567 41 AAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG AAACCTGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG < 41bp 1 0.505773913572703 1 0.896170675754547 experiment 0.988452172854594 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601547 chr16:601532 nonsynonymous SNV 0.975 5 6 hm5C_associated_SNPs_35492 0 0 1 0 1 chromatin 1 0.500231643921092 0.207658648490906 0.999536712157815 hm5C_site_35188 DeepMRMD:0.207658648490906;iRNA_m5C:0.999536712157815 35189 chr11 33667283 33667283 1 + C G SKCM 33667280 + 33667260 33667300 41 ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCCAGGTCT ACATTGACAGAGTTCCTGAGCCCGGGGGCTATTCCAGGTCT < 41bp 1 0.422026060243884 1 0.254817426204681 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33667280 chr11:33667283 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_35493 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35189 DeepMRMD:1;iRNA_m5C:0.999536712157815 35190 chr22 41735895 41735895 1 + G A SKCM 41735900 + 41735880 41735920 41 CCCGTGTTCCCCGGCGGGACCCCACTGCTACCACCTGTGGT CCCGTGTTCCCCGGCAGGACCCCACTGCTACCACCTGTGGT < 41bp 1 0.0670512619750958 1 0.0646528899669647 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735900 chr22:41735895 nonsynonymous SNV 0.987 3 16 hm5C_associated_SNPs_35494 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35190 DeepMRMD:1;iRNA_m5C:0.999536712157815 35191 chr1 7796526 7796526 1 + C T SKCM 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTTCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG < 41bp 1 0.297821045438357 1 0.323149740695953 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796526 synonymous SNV . 0 3 hm5C_associated_SNPs_35495 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35191 DeepMRMD:1;iRNA_m5C:0.999536712157815 35192 chr16 601531 601531 1 + C T SKCM 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCCGAAACTCGTGGGGCCGTTTCTCCTGGAACGGCAGC < 41bp 1 0.0232414748402202 1 0.0489689707756042 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601531 nonsynonymous SNV 0.986 5 12 hm5C_associated_SNPs_35496 0 0 1 0 1 chromatin 1 0.500231642921668 1 0.999536714156665 hm5C_site_35192 DeepMRMD:1;iRNA_m5C:0.999536714156665 35193 chr16 601531 601531 1 + C T SKCM 601547 + 601527 601567 41 AAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG AAACTCGTGGGGCCGTTTCTCCTGGAACGGCAGCTGGTCCG < 41bp 1 0.46752809437638 1 0.924241185188293 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601547 chr16:601531 nonsynonymous SNV 0.986 5 5 hm5C_associated_SNPs_35497 0 0 1 0 1 chromatin 1 0.500231643920972 0.151517629623414 0.999536712158055 hm5C_site_35193 DeepMRMD:0.151517629623414;iRNA_m5C:0.999536712158055 35194 chr17 53852169 53852169 1 + C T SKCM 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTTGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT < 41bp 1 0.304697090207229 1 0.113316476345062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852169 synonymous SNV . 0 5 hm5C_associated_SNPs_35498 0 0 1 3 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35194 DeepMRMD:1;iRNA_m5C:0.999536712157815 35195 chr20 61450607 61450607 1 + C T SKCM 61450587 + 61450567 61450607 41 TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAC TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAT < 41bp 1 0.315402112550531 1 0.0916366279125214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450587 chr20:61450607 nonsynonymous SNV 0.887 1 41 hm5C_associated_SNPs_35501 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35195 DeepMRMD:1;iRNA_m5C:0.999536712157815 35196 chr20 61450607 61450607 1 + C T SKCM 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAATC < 41bp 1 0.20142079891936 1 0.177187502384186 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450607 nonsynonymous SNV 0.887 1 40 hm5C_associated_SNPs_35502 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35196 DeepMRMD:1;iRNA_m5C:0.999536712157815 35197 chr20 61450608 61450608 1 + C T SKCM 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACT < 41bp 1 0.163271406067532 1 0.183100044727325 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450608 nonsynonymous SNV 0.888 2 41 hm5C_associated_SNPs_35503 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35197 DeepMRMD:1;iRNA_m5C:0.999536712157815 35198 chr5 176519776 176519776 1 + G A SKCM 176519758 + 176519738 176519778 41 ATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG ATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGATG < 41bp 1 0.291870793184993 1 0.186469405889511 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519758 chr5:176519776 nonsynonymous SNV 0.994 5 39 hm5C_associated_SNPs_35504 0 0 1 0 1 Endoplasmic reticulum 1 0.500193968422404 1 0.999612063155192 hm5C_site_35198 DeepMRMD:1;iRNA_m5C:0.999612063155192 35199 chrX 73046495 73046495 1 + C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGAAAATCCCAAGATGAGAACCCTAAAC < 41bp 1 0.599240269793099 1 0.641047835350037 experiment 0.801519460413801 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046495 . . 0 16 hm5C_associated_SNPs_35505 0 0 1 3 0 unknown 1 0.500231643921092 0.717904329299926 0.999536712157815 hm5C_site_35199 DeepMRMD:0.717904329299926;iRNA_m5C:0.999536712157815 35200 chr14 53173913 53173913 1 + C T SKCM 53173926 + 53173906 53173946 41 CCGGCATCCCCTATGAGAGACGGCTTCTCATCATGGCGGAC CCGGCATTCCCTATGAGAGACGGCTTCTCATCATGGCGGAC < 41bp 1 0.571220678778754 1 0.171849489212036 experiment 0.857558642442491 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMC6 ENSG00000100519 CDS Human protein_coding chr14:53173926 chr14:53173913 synonymous SNV . 0 8 hm5C_associated_SNPs_35507 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_35200 DeepMRMD:1;iRNA_m5C:0.999536712157815 35201 chr3 66430815 66430815 1 + C A SKCM 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCGCGCGGAATCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.648765213799617 1 0.538532435894012 experiment 0.702469572400766 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430815 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_35508 0 0 0 0 1 Ribosome 1 0.500231644023979 0.922935128211976 0.999536711952042 hm5C_site_35201 DeepMRMD:0.922935128211976;iRNA_m5C:0.999536711952042 35202 chr9 133761000 133761000 1 + C T SKCM 133760999 + 133760979 133761019 41 CGGCGACAGCAGGCAGTGGTCCAGCGGCCACTCAGGACTTC CGGCGACAGCAGGCAGTGGTCTAGCGGCCACTCAGGACTTC < 41bp 1 0.571444528481778 1 0.793468832969666 experiment 0.857110943036445 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760999 chr9:133761000 nonsynonymous SNV 0.019 2 22 hm5C_associated_SNPs_35509 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643991327 0.413062334060668 0.999536712017346 hm5C_site_35202 DeepMRMD:0.413062334060668;iRNA_m5C:0.999536712017346 35203 chr8 22429243 22429243 1 + C T SKCM 22429234 + 22429214 22429254 41 TTCCTGTCAACTCCCAGAATCTTGGCACCCCTGGTCCAGCT TTCCTGTCAACTCCCAGAATCTTGGCACCTCTGGTCCAGCT < 41bp 1 0.243555720788438 1 0.336476445198059 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429234 chr8:22429243 nonsynonymous SNV 0.000 0 30 hm5C_associated_SNPs_35510 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35203 DeepMRMD:1;iRNA_m5C:0.999536712157815 35204 chr11 118374533 118374533 1 + C T SKCM 118374513 + 118374493 118374533 41 ACATGTTTTTTGGGCTTACCCCACTCTATGGAGTAAGATCC ACATGTTTTTTGGGCTTACCCCACTCTATGGAGTAAGATCT < 41bp 1 0.0602856189528417 1 0.193253546953201 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118374513 chr11:118374533 synonymous SNV . 0 41 hm5C_associated_SNPs_35511 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35204 DeepMRMD:1;iRNA_m5C:0.999536712157815 35205 chr1 16261124 16261124 1 + C T SKCM 16261121 + 16261101 16261141 41 CCATGCCTGTGATCGACGATCGTCCGGCAGACGCGGGCTCA CCATGCCTGTGATCGACGATCGTTCGGCAGACGCGGGCTCA < 41bp 1 0.0769118908663652 1 0.0774362981319427 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16261121 chr1:16261124 nonsynonymous SNV 0.071 0 24 hm5C_associated_SNPs_35512 0 0 1 0 0 Endoplasmic reticulum 1 0.500231861141703 1 0.999536277716594 hm5C_site_35205 DeepMRMD:1;iRNA_m5C:0.999536277716594 35206 chr12 69651683 69651683 1 + C T SKCM 69651667 + 69651647 69651687 41 GGCCAGCAGGACCAGGAGGGCCACCCCCACCTTTTCCAGGT GGCCAGCAGGACCAGGAGGGCCACCCCCACCTTTTCTAGGT < 41bp 1 0.142798347370311 1 0.217149317264557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69651667 chr12:69651683 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_35513 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35206 DeepMRMD:1;iRNA_m5C:0.999536712157815 35207 chr7 128445511 128445511 1 + C T SKCM 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATGGATTTCTTAGAGCCTGATCTTGAAATGCAGTTGT < 41bp 1 0.243829022557504 1 0.137603282928467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445511 nonsynonymous SNV 0.997 2 27 hm5C_associated_SNPs_35514 0 0 1 0 2 chromatin 1 0.500231602855284 1 0.999536794289432 hm5C_site_35207 DeepMRMD:1;iRNA_m5C:0.999536794289432 35208 chr7 128445511 128445511 1 + C T SKCM 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TGGATTTCTTAGAGCCTGATCTTGAAATGCAGTTGTTACGG < 41bp 1 0.601443876507685 1 0.475395679473877 experiment 0.797112246984629 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445511 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_35515 0 0 1 0 2 chromatin 1 0.500231643921154 1 0.999536712157691 hm5C_site_35208 DeepMRMD:1;iRNA_m5C:0.999536712157691 35209 chr5 43173458 43173458 1 + T A SKCM 43173455 + 43173435 43173475 41 AATGTCCAAATTGTCATGAACGATTTGCTAGAAATAGCACT AATGTCCAAATTGTCATGAACGAATTGCTAGAAATAGCACT < 41bp 1 0.183071475250217 1 0.152678281068802 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43173455 chr5:43173458 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_35516 0 0 1 0 2 Cytosol 1 0.50017269430919 1 0.99965461138162 hm5C_site_35209 DeepMRMD:1;iRNA_m5C:0.99965461138162 35210 chr10 105172941 105172941 1 + C T SKCM 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTTCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC < 41bp 1 0.106103211493574 1 0.0480006635189056 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172941 synonymous SNV . 0 4 hm5C_associated_SNPs_35518 0 0 1 0 1 Nucleus 1 0.500231644469162 1 0.999536711061676 hm5C_site_35210 DeepMRMD:1;iRNA_m5C:0.999536711061676 35211 chr7 133164807 133164807 1 + C T SKCM 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTTGAATCGTCCTCCCATGCCATCAGTA < 41bp 1 0.264843972922024 1 0.256255328655243 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164807 synonymous SNV . 0 16 hm5C_associated_SNPs_35519 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35211 DeepMRMD:1;iRNA_m5C:0.999536712157815 35212 chr10 102824028 102824028 1 + C T SKCM 102824020 + 102824000 102824040 41 TCCCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCA TCCCGCCTTCACCCCCAGGGCCCCAGATTGTGTCACATCCA < 41bp 1 0.193504972158698 1 0.150785326957703 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824020 chr10:102824028 synonymous SNV . 0 29 hm5C_associated_SNPs_35522 0 0 0 0 2 nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_35212 DeepMRMD:1;iRNA_m5C:0.999536712157815 35213 chr10 102824028 102824028 1 + C T SKCM 102824021 + 102824001 102824041 41 CCCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCAT CCCGCCTTCACCCCCAGGGCCCCAGATTGTGTCACATCCAT < 41bp 1 0.0659341923098508 1 0.0452340245246887 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824021 chr10:102824028 synonymous SNV . 0 28 hm5C_associated_SNPs_35523 0 0 0 0 2 nucleus 1 0.500231644187497 1 0.999536711625006 hm5C_site_35213 DeepMRMD:1;iRNA_m5C:0.999536711625006 35214 chr10 102824028 102824028 1 + C T SKCM 102824022 + 102824002 102824042 41 CCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCATA CCGCCTTCACCCCCAGGGCCCCAGATTGTGTCACATCCATA < 41bp 1 0.190227038900461 1 0.0696994960308075 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824022 chr10:102824028 synonymous SNV . 0 27 hm5C_associated_SNPs_35524 0 0 0 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35214 DeepMRMD:1;iRNA_m5C:0.999536712157815 35215 chr10 102824028 102824028 1 + C T SKCM 102824023 + 102824003 102824043 41 CGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCATAT CGCCTTCACCCCCAGGGCCCCAGATTGTGTCACATCCATAT < 41bp 1 0.141740284704874 1 0.326568126678467 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824023 chr10:102824028 synonymous SNV . 0 26 hm5C_associated_SNPs_35525 0 0 0 0 2 nucleus 1 0.500231688880029 1 0.999536622239943 hm5C_site_35215 DeepMRMD:1;iRNA_m5C:0.999536622239943 35216 chr7 142458426 142458426 1 + G A SKCM 142458409 + 142458389 142458429 41 TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATG TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATAATG < 41bp 1 0.0582905277860766 1 0.0772731900215149 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458409 chr7:142458426 nonsynonymous SNV 0.714 4 38 hm5C_associated_SNPs_35526 0 0 0 0 1 Cytosol 1 0.500231643016261 1 0.999536713967479 hm5C_site_35216 DeepMRMD:1;iRNA_m5C:0.999536713967479 35217 chr7 142458426 142458426 1 + G A SKCM 142458412 + 142458392 142458432 41 CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACA CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATAATGACA < 41bp 1 0.0175173411142822 1 0.243454247713089 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458412 chr7:142458426 nonsynonymous SNV 0.714 4 35 hm5C_associated_SNPs_35527 0 0 0 0 1 Cytosol 1 0.500231643921101 1 0.999536712157797 hm5C_site_35217 DeepMRMD:1;iRNA_m5C:0.999536712157797 35218 chr7 142458426 142458426 1 + G A SKCM 142458413 + 142458393 142458433 41 ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAA ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATAATGACAA < 41bp 1 0.0515300096645422 1 0.166543573141098 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458413 chr7:142458426 nonsynonymous SNV 0.714 4 34 hm5C_associated_SNPs_35528 0 0 0 0 1 Cytosol 1 0.500231643956454 1 0.999536712087092 hm5C_site_35218 DeepMRMD:1;iRNA_m5C:0.999536712087092 35219 chr7 142458426 142458426 1 + G A SKCM 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGCTGCCCCCTTTGATGATAATGACAAG < 41bp 1 0.027262624174248 1 0.179719686508179 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458426 nonsynonymous SNV 0.714 4 33 hm5C_associated_SNPs_35529 0 0 0 0 1 Cytosol 1 0.500231643921426 1 0.999536712157149 hm5C_site_35219 DeepMRMD:1;iRNA_m5C:0.999536712157149 35220 chr7 142458426 142458426 1 + G A SKCM 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGCTGCCCCCTTTGATGATAATGACAAGA < 41bp 1 0.00297288814754619 1 0.132223516702652 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458426 nonsynonymous SNV 0.714 4 32 hm5C_associated_SNPs_35530 0 0 0 0 1 Cytosol 1 0.500231645478881 1 0.999536709042238 hm5C_site_35220 DeepMRMD:1;iRNA_m5C:0.999536709042238 35221 chr7 142458426 142458426 1 + G A SKCM 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGCTGCCCCCTTTGATGATAATGACAAGAT < 41bp 1 0.0543083176031863 1 0.10258686542511 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458426 nonsynonymous SNV 0.714 4 31 hm5C_associated_SNPs_35531 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_35221 DeepMRMD:1;iRNA_m5C:0.999536712157814 35222 chr7 142458426 142458426 1 + G A SKCM 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATAATGACAAGATCGTTGGGGGCTACAA < 41bp 1 0.690311982313198 1 0.487365663051605 experiment 0.619376035373604 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458426 nonsynonymous SNV 0.714 4 16 hm5C_associated_SNPs_35532 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35222 DeepMRMD:1;iRNA_m5C:0.999536712157815 35223 chr7 142458426 142458426 1 + G A SKCM 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATAATGACAAGATCGTTGGGGGCTACAACTGTGA < 41bp 1 0.1840905857178 1 0.136621594429016 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458426 nonsynonymous SNV 0.714 4 10 hm5C_associated_SNPs_35533 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_35223 DeepMRMD:1;iRNA_m5C:0.999536712157817 35224 chr7 142458426 142458426 1 + G A SKCM 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC AATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC < 41bp 1 0.330604219981136 1 0.482866764068604 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458426 nonsynonymous SNV 0.714 4 1 hm5C_associated_SNPs_35534 0 0 0 0 1 Cytosol 1 0.500231643926283 1 0.999536712147434 hm5C_site_35224 DeepMRMD:1;iRNA_m5C:0.999536712147434 35225 chr6 7579510 7579510 1 + G A SKCM 7579519 + 7579499 7579539 41 ATTCCACAGCTGAAAAATACCAAGATCGAAGTTTTGGAAGA ATTCCACAGCTAAAAAATACCAAGATCGAAGTTTTGGAAGA < 41bp 1 0.639746929857134 1 0.407772094011307 experiment 0.720506140285732 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579519 chr6:7579510 synonymous SNV . 0 12 hm5C_associated_SNPs_35535 0 0 1 0 1 Nucleus 1 0.500231650898867 1 0.999536698202265 hm5C_site_35225 DeepMRMD:1;iRNA_m5C:0.999536698202265 35226 chr1 180794045 180794045 1 + C T SKCM 180794028 + 180794008 180794048 41 GCTGGAGTAAACCATGTACTCATCTTTGAACTTAATCCGAG GCTGGAGTAAACCATGTACTCATCTTTGAACTTAATCTGAG < 41bp 1 0.340997693845265 1 0.579878747463226 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control XPR1 ENSG00000143324 CDS Human protein_coding chr1:180794028 chr1:180794045 nonsynonymous SNV 0.988 4 38 hm5C_associated_SNPs_35536 0 0 1 0 1 Ribosome 1 0.500231640337656 0.840242505073548 0.999536719324688 hm5C_site_35226 DeepMRMD:0.840242505073548;iRNA_m5C:0.999536719324688 35227 chr14 65511121 65511121 1 + G A SKCM 65511109 + 65511089 65511129 41 CTGGTGGATGGCTGCTACTCCTTCTGGCAGGCGGGGCTCCT CTGGTGGATGGCTGCTACTCCTTCTGGCAGGCAGGGCTCCT < 41bp 1 0.412032769814311 1 0.016371876001358 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65511109 chr14:65511121 synonymous SNV . 0 33 hm5C_associated_SNPs_35537 0 0 1 0 2 unknown 1 0.50023164392108 1 0.999536712157839 hm5C_site_35227 DeepMRMD:1;iRNA_m5C:0.999536712157839 35228 chrX 73045913 73045913 1 + C A SKCM 73045896 - 73045876 73045916 41 GATGGTTATGGAAAGGGTGACTGTGCCTGGGACAAAGCGAG GATTGTTATGGAAAGGGTGACTGTGCCTGGGACAAAGCGAG < 41bp 1 0.207932311647403 1 0.170748651027679 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045896 chrX:73045913 . . 0 4 hm5C_associated_SNPs_35538 0 0 1 0 0 unknown 1 0.500231649470498 1 0.999536701059004 hm5C_site_35228 DeepMRMD:1;iRNA_m5C:0.999536701059004 35229 chr16 31235542 31235542 1 + G A SKCM 31235556 + 31235536 31235576 41 GCACCCGAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG GCACCCAAGCCTGGTGGTGTCTTCCTCTGGCCGCCGCGTGG < 41bp 1 0.298312879772828 1 0.0939420461654663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31235556 chr16:31235542 synonymous SNV . 0 7 hm5C_associated_SNPs_35539 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35229 DeepMRMD:1;iRNA_m5C:0.999536712157815 35230 chr6 31594923 31594923 1 + C T SKCM 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACTCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.301480898236747 1 0.10601395368576 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594923 nonsynonymous SNV 0.999 3 5 hm5C_associated_SNPs_35540 0 0 1 0 1 Ribosome 1 0.500231644096682 1 0.999536711806635 hm5C_site_35230 DeepMRMD:1;iRNA_m5C:0.999536711806635 35231 chr6 31594923 31594923 1 + C T SKCM 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACTCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.282761106522014 1 0.107087522745132 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594923 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_35541 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35231 DeepMRMD:1;iRNA_m5C:0.999536712157815 35232 chr6 31594923 31594923 1 + C T SKCM 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACTCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.343456864718222 1 0.259258151054382 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594923 nonsynonymous SNV 0.999 3 3 hm5C_associated_SNPs_35542 0 0 1 0 1 Ribosome 1 0.500231644107459 1 0.999536711785082 hm5C_site_35232 DeepMRMD:1;iRNA_m5C:0.999536711785082 35233 chr6 31594923 31594923 1 + C T SKCM 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CTCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC < 41bp 1 0.574862050078962 1 0.434541940689087 experiment 0.850275899842076 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594923 nonsynonymous SNV 0.999 3 2 hm5C_associated_SNPs_35543 0 0 1 0 1 Ribosome 1 0.500231643921221 1 0.999536712157558 hm5C_site_35233 DeepMRMD:1;iRNA_m5C:0.999536712157558 35234 chr17 57738922 57738922 1 + A T SKCM 57738906 + 57738886 57738926 41 ACTTTGGTATCCTTTTGGACCAGGGACAGCTCAACAAATAC ACTTTGGTATCCTTTTGGACCAGGGACAGCTCAACATATAC < 41bp 1 0.613588861962751 1 0.546362817287445 experiment 0.772822276074498 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57738906 chr17:57738922 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_35544 0 0 1 0 1 Nucleus 1 0.50023164388601 0.90727436542511 0.999536712227981 hm5C_site_35234 DeepMRMD:0.90727436542511;iRNA_m5C:0.999536712227981 35235 chr12 8196335 8196335 1 + C T SKCM 8196351 + 8196331 8196371 41 TTTCCCGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT TTTCTCGAAAGAGAAGACACCCTCCAGATGATGATGTAAGT < 41bp 1 0.0186036762979307 1 0.136124849319458 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196351 chr12:8196335 synonymous SNV . 0 5 hm5C_associated_SNPs_35545 0 0 1 0 1 nucleoplasm 1 0.500231643920761 1 0.999536712158477 hm5C_site_35235 DeepMRMD:1;iRNA_m5C:0.999536712158477 35236 chr6 7583128 7583128 1 + T A SKCM 7583125 + 7583105 7583145 41 ATATTCCCGCAAGGAGGAGGCTATTAGGAAGATAGAATCGG ATATTCCCGCAAGGAGGAGGCTAATAGGAAGATAGAATCGG < 41bp 1 0.123639139983551 1 0.195383191108704 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7583125 chr6:7583128 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_35546 0 0 1 0 0 Nucleus 1 0.500231643924065 1 0.999536712151869 hm5C_site_35236 DeepMRMD:1;iRNA_m5C:0.999536712151869 35237 chr16 72134461 72134461 1 + C G SKCM 72134463 + 72134443 72134483 41 GTGCACAATCTGGTGCCTCCCTTTCTGGATGGGCGCATTGT GTGCACAATCTGGTGCCTGCCTTTCTGGATGGGCGCATTGT < 41bp 1 0.0740904594393557 1 0.0228444039821625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72134463 chr16:72134461 nonsynonymous SNV 0.998 3 19 hm5C_associated_SNPs_35547 0 0 1 0 0 Cytosol 1 0.500231636990397 1 0.999536726019207 hm5C_site_35237 DeepMRMD:1;iRNA_m5C:0.999536726019207 35238 chr14 75359620 75359620 1 + C T SKCM 75359614 + 75359594 75359634 41 AACCTACAGCAGCGGCAGTTCCTCCCCCTGCAGCACCCATA AACCTACAGCAGCGGCAGTTCCTCCCTCTGCAGCACCCATA < 41bp 1 0.167068683000329 1 0.110494792461395 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359614 chr14:75359620 nonsynonymous SNV 0.525 1 27 hm5C_associated_SNPs_35548 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35238 DeepMRMD:1;iRNA_m5C:0.999536712157815 35239 chrX 73046761 73046761 1 + G A SKCM 73046754 - 73046734 73046774 41 GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA GTTGGATGGAAGTTTCAAGGCTTGAGTTAGAAGTCTTAAGA < 41bp 1 0.539165735325983 1 0.114602327346802 experiment 0.921668529348033 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046754 chrX:73046761 . . 0 14 hm5C_associated_SNPs_35549 0 0 1 0 0 unknown 1 0.500231694700677 1 0.999536610598645 hm5C_site_35239 DeepMRMD:1;iRNA_m5C:0.999536610598645 35240 chrX 73046761 73046761 1 + G A SKCM 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTTTC < 41bp 1 0.323731026475386 1 0.377894014120102 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046761 . . 0 39 hm5C_associated_SNPs_35550 0 0 1 0 0 unknown 1 0.500231643407997 1 0.999536713184005 hm5C_site_35240 DeepMRMD:1;iRNA_m5C:0.999536713184005 35241 chr3 138119420 138119420 1 + C T SKCM 138119409 + 138119389 138119429 41 AAACCAGTGCCAAGGACCCACCTCTCAATGTCGACAAAGCC AAACCAGTGCCAAGGACCCACCTCTCAATGTTGACAAAGCC < 41bp 1 0.0220267134435915 1 0.104357570409775 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRAS ENSG00000158186 CDS Human protein_coding chr3:138119409 chr3:138119420 synonymous SNV . 0 32 hm5C_associated_SNPs_35551 0 0 0 0 2 Cytosol 1 0.500231714260445 1 0.99953657147911 hm5C_site_35241 DeepMRMD:1;iRNA_m5C:0.99953657147911 35242 chr1 22332214 22332214 1 + C T SKCM 22332194 + 22332174 22332214 41 GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCT < 41bp 1 0.0980161227593687 1 0.244807153940201 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332194 chr1:22332214 nonsynonymous SNV 0.944 1 41 hm5C_associated_SNPs_35552 0 0 0 0 2 Endoplasmic reticulum 1 0.500235342529959 1 0.999529314940081 hm5C_site_35242 DeepMRMD:1;iRNA_m5C:0.999529314940081 35243 chr1 22332214 22332214 1 + C T SKCM 22332195 + 22332175 22332215 41 TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCC TGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCTC < 41bp 1 0.568488305428795 1 0.123690724372864 experiment 0.86302338914241 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332195 chr1:22332214 nonsynonymous SNV 0.944 1 40 hm5C_associated_SNPs_35553 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164925351 1 0.999536701492979 hm5C_site_35243 DeepMRMD:1;iRNA_m5C:0.999536701492979 35244 chr1 22332214 22332214 1 + C T SKCM 22332199 + 22332179 22332219 41 GTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGC GTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCTCGAGC < 41bp 1 0.582508673551563 1 0.0593867599964142 experiment 0.834982652896873 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332199 chr1:22332214 nonsynonymous SNV 0.944 1 36 hm5C_associated_SNPs_35554 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921926 1 0.999536712156148 hm5C_site_35244 DeepMRMD:1;iRNA_m5C:0.999536712156148 35245 chr1 22332214 22332214 1 + C T SKCM 22332212 + 22332192 22332232 41 AACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT AACCTTGCTGTGAAGGAGGGCCTCGAGCAGGTGATCCCCAT < 41bp 1 0.121003000872461 1 0.111649006605148 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332212 chr1:22332214 nonsynonymous SNV 0.944 1 23 hm5C_associated_SNPs_35555 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921467 1 0.999536712157065 hm5C_site_35245 DeepMRMD:1;iRNA_m5C:0.999536712157065 35246 chr1 22332214 22332214 1 + C T SKCM 22332227 + 22332207 22332247 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT GAGGGCCTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT < 41bp 1 0.549724387140516 1 0.130411624908447 experiment 0.900551225718969 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332227 chr1:22332214 nonsynonymous SNV 0.944 1 8 hm5C_associated_SNPs_35557 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_35246 DeepMRMD:1;iRNA_m5C:0.999536712157814 35247 chr1 22332214 22332214 1 + C T SKCM 22332228 + 22332208 22332248 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG AGGGCCTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG < 41bp 1 0.136557948864753 1 0.0350779294967651 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332228 chr1:22332214 nonsynonymous SNV 0.944 1 7 hm5C_associated_SNPs_35558 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643915262 1 0.999536712169476 hm5C_site_35247 DeepMRMD:1;iRNA_m5C:0.999536712169476 35248 chr1 22332214 22332214 1 + C T SKCM 22332229 + 22332209 22332249 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT GGGCCTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT < 41bp 1 0.0803453316137861 1 0.179816335439682 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332229 chr1:22332214 nonsynonymous SNV 0.944 1 6 hm5C_associated_SNPs_35559 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_35248 DeepMRMD:1;iRNA_m5C:0.999536712157816 35249 chr1 22332214 22332214 1 + C T SKCM 22332230 + 22332210 22332250 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT GGCCTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT < 41bp 1 0.420446396745736 1 0.317745983600616 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332230 chr1:22332214 nonsynonymous SNV 0.944 1 5 hm5C_associated_SNPs_35560 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643875165 1 0.999536712249669 hm5C_site_35249 DeepMRMD:1;iRNA_m5C:0.999536712249669 35250 chr1 22332214 22332214 1 + C T SKCM 22332233 + 22332213 22332253 41 CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT CTCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT < 41bp 1 0.44301032004779 1 0.513051271438599 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332233 chr1:22332214 nonsynonymous SNV 0.944 1 2 hm5C_associated_SNPs_35561 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643923488 0.973897457122802 0.999536712153024 hm5C_site_35250 DeepMRMD:0.973897457122802;iRNA_m5C:0.999536712153024 35251 chr19 50285900 50285900 1 + C T SKCM 50285882 + 50285862 50285902 41 TGACCTGGCCAGCCGCAACCCCACCTTCATGTGCCTGGCCC TGACCTGGCCAGCCGCAACCCCACCTTCATGTGCCTGGTCC < 41bp 1 0.213908992398128 1 0.207119941711426 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50285882 chr19:50285900 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_35562 0 0 1 0 1 Ribosome 1 0.500231643922845 1 0.99953671215431 hm5C_site_35251 DeepMRMD:1;iRNA_m5C:0.99953671215431 35252 chr10 114918442 114918442 1 + C T SKCM 114918428 + 114918408 114918448 41 TTTGTTCTTTTTTTTCAGAACACAGCGAATGTTTCCTAAAT TTTGTTCTTTTTTTTCAGAACACAGCGAATGTTTTCTAAAT < 41bp 1 0.272355281389591 1 0.274420320987701 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114918428 chr10:114918442 synonymous SNV . 0 35 hm5C_associated_SNPs_35563 0 0 1 0 2 Nucleus 1 0.500231628618518 1 0.999536742762965 hm5C_site_35252 DeepMRMD:1;iRNA_m5C:0.999536742762965 35253 chr4 126398345 126398345 1 + G A SKCM 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTTACAGTTGAAGGTATCAGATCTCTAGAACCAATCCT < 41bp 1 0.118054144469681 1 0.783479809761047 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398345 nonsynonymous SNV 0.992 4 14 hm5C_associated_SNPs_35564 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921205 0.433040380477906 0.99953671215759 hm5C_site_35253 DeepMRMD:0.433040380477906;iRNA_m5C:0.99953671215759 35254 chr5 173378909 173378909 1 + T G SKCM 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCACGAAAAACTATATGTGTT < 41bp 1 0.178858351604315 1 0.350405037403107 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378909 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_35565 0 0 1 0 2 Ribosome 1 0.50023165220231 1 0.999536695595381 hm5C_site_35254 DeepMRMD:1;iRNA_m5C:0.999536695595381 35255 chr19 806455 806455 1 + C T SKCM 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCTCCTCGG < 41bp 1 0.287091764674781 1 0.0276341140270233 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806455 nonsynonymous SNV 0.006 0 35 hm5C_associated_SNPs_35566 0 0 1 0 1 Cytosol 1 0.500231643921085 1 0.99953671215783 hm5C_site_35255 DeepMRMD:1;iRNA_m5C:0.99953671215783 35256 chr19 806455 806455 1 + C T SKCM 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCTCCTCGGC < 41bp 1 0.340961109640954 1 0.044533908367157 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806455 nonsynonymous SNV 0.006 0 34 hm5C_associated_SNPs_35567 0 0 1 0 1 Cytosol 1 0.500231640046025 1 0.99953671990795 hm5C_site_35256 DeepMRMD:1;iRNA_m5C:0.99953671990795 35257 chr19 806455 806455 1 + C T SKCM 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCTCCTCGGCG < 41bp 1 0.43207665864714 1 0.0123945474624634 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806455 nonsynonymous SNV 0.006 0 33 hm5C_associated_SNPs_35568 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_35257 DeepMRMD:1;iRNA_m5C:0.999536712157816 35258 chr19 806455 806455 1 + C T SKCM 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG CGTCCACGGCGCCCTGGCCCCCCTGGCCATCTCCTCGGCGG < 41bp 1 0.554067004766479 1 0.135678470134735 experiment 0.891865990467042 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806455 nonsynonymous SNV 0.006 0 32 hm5C_associated_SNPs_35569 0 0 1 0 1 Cytosol 1 0.500231643914448 1 0.999536712171105 hm5C_site_35258 DeepMRMD:1;iRNA_m5C:0.999536712171105 35259 chr19 806455 806455 1 + C T SKCM 806445 + 806425 806465 41 GTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGC GTCCACGGCGCCCTGGCCCCCCTGGCCATCTCCTCGGCGGC < 41bp 1 0.454110125931675 1 0.364748150110245 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806445 chr19:806455 nonsynonymous SNV 0.006 0 31 hm5C_associated_SNPs_35570 0 0 1 0 1 Cytosol 1 0.500231643921109 1 0.999536712157783 hm5C_site_35259 DeepMRMD:1;iRNA_m5C:0.999536712157783 35260 chr19 806455 806455 1 + C T SKCM 806450 + 806430 806470 41 CGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGG CGGCGCCCTGGCCCCCCTGGCCATCTCCTCGGCGGCGGCGG < 41bp 1 0.0869612546371572 1 0.079433798789978 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806450 chr19:806455 nonsynonymous SNV 0.006 0 26 hm5C_associated_SNPs_35572 0 0 1 0 1 Cytosol 1 0.50023164497538 1 0.99953671004924 hm5C_site_35260 DeepMRMD:1;iRNA_m5C:0.99953671004924 35261 chr19 806455 806455 1 + C T SKCM 806451 + 806431 806471 41 GGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGC GGCGCCCTGGCCCCCCTGGCCATCTCCTCGGCGGCGGCGGC < 41bp 1 0.247462881915688 1 0.158103823661804 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806451 chr19:806455 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_35573 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_35261 DeepMRMD:1;iRNA_m5C:0.999536712157816 35262 chr11 119050833 119050833 1 + C T SKCM 119050815 + 119050795 119050835 41 CGCTTCTCCGCTGAGGTGCTCAGCTCCCTGCGTCAGCTCAA CGCTTCTCCGCTGAGGTGCTCAGCTCCCTGCGTCAGCTTAA < 41bp 1 0.280404801227704 1 0.220941632986069 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119050815 chr11:119050833 synonymous SNV . 0 39 hm5C_associated_SNPs_35575 0 0 0 0 0 exosome 1 0.500231872890799 1 0.999536254218402 hm5C_site_35262 DeepMRMD:1;iRNA_m5C:0.999536254218402 35263 chr22 40802634 40802634 1 + C T SKCM 40802642 + 40802622 40802662 41 CAGGGCCAGCTCCTGGGGGCCGGCACCCTCACCAACCTCTC CAGGGCCAGCTCTTGGGGGCCGGCACCCTCACCAACCTCTC < 41bp 1 0.644376611830684 1 0.710940778255463 experiment 0.711246776338633 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40802642 chr22:40802634 synonymous SNV . 0 13 hm5C_associated_SNPs_35576 0 0 1 0 1 Cytosol 1 0.500231643921531 0.578118443489074 0.999536712156937 hm5C_site_35263 DeepMRMD:0.578118443489074;iRNA_m5C:0.999536712156937 35264 chr10 118314743 118314743 1 + G A SKCM 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGA < 41bp 1 0.451490201666903 1 0.0457857847213745 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314743 nonsynonymous SNV 0.998 5 41 hm5C_associated_SNPs_35577 0 0 0 0 1 unknown 1 0.500231673661317 1 0.999536652677366 hm5C_site_35264 DeepMRMD:1;iRNA_m5C:0.999536652677366 35265 chr10 118314743 118314743 1 + G A SKCM 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGAAC < 41bp 1 0.227775581199231 1 0.290993213653564 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314743 nonsynonymous SNV 0.998 5 39 hm5C_associated_SNPs_35578 0 0 0 0 1 unknown 1 0.500231643928378 1 0.999536712143243 hm5C_site_35265 DeepMRMD:1;iRNA_m5C:0.999536712143243 35266 chr10 118314743 118314743 1 + G A SKCM 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGGCACACCTGAATTAGTCCGATTGAACCCCAGCGATGC < 41bp 1 0.350688940700664 1 0.261632859706879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314743 nonsynonymous SNV 0.998 5 28 hm5C_associated_SNPs_35580 0 0 0 0 1 unknown 1 0.500231643815899 1 0.999536712368202 hm5C_site_35266 DeepMRMD:1;iRNA_m5C:0.999536712368202 35267 chr10 118314743 118314743 1 + G A SKCM 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGGCACACCTGAATTAGTCCGATTGAACCCCAGCGATGCC < 41bp 1 0.23896171581895 1 0.0804831087589264 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314743 nonsynonymous SNV 0.998 5 27 hm5C_associated_SNPs_35581 0 0 0 0 1 unknown 1 0.500231655372278 1 0.999536689255443 hm5C_site_35267 DeepMRMD:1;iRNA_m5C:0.999536689255443 35268 chr10 118314743 118314743 1 + G A SKCM 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCGATTGAACCCCAGCGATGCCAAATTTGT < 41bp 1 0.594806096205609 1 0.0885636806488037 experiment 0.810387807588782 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314743 nonsynonymous SNV 0.998 5 19 hm5C_associated_SNPs_35582 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_35268 DeepMRMD:1;iRNA_m5C:0.999536712157815 35269 chr10 118314743 118314743 1 + G A SKCM 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCGATTGAACCCCAGCGATGCCAAATTTGTG < 41bp 1 0.220053291575936 1 0.186921983957291 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314743 nonsynonymous SNV 0.998 5 18 hm5C_associated_SNPs_35583 0 0 0 0 1 unknown 1 0.500232593774832 1 0.999534812450336 hm5C_site_35269 DeepMRMD:1;iRNA_m5C:0.999534812450336 35270 chr10 118314743 118314743 1 + G A SKCM 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCGATTGAACCCCAGCGATGCCAAATTTGTGG < 41bp 1 0.333246397200552 1 0.268136888742447 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314743 nonsynonymous SNV 0.998 5 17 hm5C_associated_SNPs_35584 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_35270 DeepMRMD:1;iRNA_m5C:0.999536712157815 35271 chr10 118314743 118314743 1 + G A SKCM 118314748 + 118314728 118314768 41 GAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGA GAATTAGTCCGATTGAACCCCAGCGATGCCAAATTTGTGGA < 41bp 1 0.698355612295192 1 0.366041153669357 experiment 0.603288775409616 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314748 chr10:118314743 nonsynonymous SNV 0.998 5 16 hm5C_associated_SNPs_35585 0 0 0 0 1 unknown 1 0.500231780634707 1 0.999536438730585 hm5C_site_35271 DeepMRMD:1;iRNA_m5C:0.999536438730585 35272 chr10 118314743 118314743 1 + G A SKCM 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCGATTGAACCCCAGCGATGCCAAATTTGTGGATGT < 41bp 1 0.246945333015952 1 0.172598391771317 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314743 nonsynonymous SNV 0.998 5 13 hm5C_associated_SNPs_35586 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_35272 DeepMRMD:1;iRNA_m5C:0.999536712157815 35273 chr10 118314743 118314743 1 + G A SKCM 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCGATTGAACCCCAGCGATGCCAAATTTGTGGATGTAATTC < 41bp 1 0.307437962226211 1 0.050683468580246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314743 nonsynonymous SNV 0.998 5 8 hm5C_associated_SNPs_35587 0 0 0 0 1 unknown 1 0.500231643920661 1 0.999536712158678 hm5C_site_35273 DeepMRMD:1;iRNA_m5C:0.999536712158678 35274 chr10 118314743 118314743 1 + G A SKCM 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CGATTGAACCCCAGCGATGCCAAATTTGTGGATGTAATTCA < 41bp 1 0.425802544001562 1 0.248462021350861 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314743 nonsynonymous SNV 0.998 5 7 hm5C_associated_SNPs_35588 0 0 0 0 1 unknown 1 0.500231643921057 1 0.999536712157886 hm5C_site_35274 DeepMRMD:1;iRNA_m5C:0.999536712157886 35275 chr10 135000054 135000054 1 + C T SKCM 135000066 + 135000046 135000086 41 TTCACACCCCAGCCAGGGGCCAGCAGAGGCCCCTGCAGACC TTCACACCTCAGCCAGGGGCCAGCAGAGGCCCCTGCAGACC < 41bp 1 0.566912886789027 1 0.764415502548218 experiment 0.866174226421945 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135000066 chr10:135000054 nonsynonymous SNV 0.001 1 9 hm5C_associated_SNPs_35589 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921112 0.471168994903564 0.999536712157777 hm5C_site_35275 DeepMRMD:0.471168994903564;iRNA_m5C:0.999536712157777 35276 chr15 72057460 72057460 1 + C T SKCM 72057443 + 72057423 72057463 41 ACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTCCTG ACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTTCTG < 41bp 1 0.0243598230036006 1 0.018947958946228 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control THSD4 ENSG00000187720 CDS Human protein_coding chr15:72057443 chr15:72057460 synonymous SNV . 0 38 hm5C_associated_SNPs_35590 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35276 DeepMRMD:1;iRNA_m5C:0.999536712157815 35277 chr16 88098895 88098895 1 + C T SKCM 88098888 + 88098868 88098908 41 TCCAGCTTCTAGAGGCCACCCGCATCCCCTGCCTCCTGGCC TCCAGCTTCTAGAGGCCACCCGCATCCTCTGCCTCCTGGCC < 41bp 1 0.222886932935174 1 0.125846296548843 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BANP ENSG00000172530 CDS Human protein_coding chr16:88098888 chr16:88098895 nonsynonymous SNV 0.960 1 28 hm5C_associated_SNPs_35591 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35277 DeepMRMD:1;iRNA_m5C:0.999536712157815 35278 chr19 5133912 5133912 1 + G A SKCM 5133900 + 5133880 5133920 41 CTCTGTTCTTCTAGAGGCATCCCCTTTCTCCGGGGAGGAAG CTCTGTTCTTCTAGAGGCATCCCCTTTCTCCGAGGAGGAAG < 41bp 1 0.0817401363631189 1 0.0315897464752197 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5133900 chr19:5133912 nonsynonymous SNV 0.358 2 33 hm5C_associated_SNPs_35592 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35278 DeepMRMD:1;iRNA_m5C:0.999536712157815 35279 chr5 71491946 71491946 1 + G A SKCM 71491948 + 71491928 71491968 41 GAGAAGCAGGGAGTAGACGACATTGAAAAATTTGAAGATGA GAGAAGCAGGGAGTAGACAACATTGAAAAATTTGAAGATGA < 41bp 1 0.114943850892317 1 0.154300689697266 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71491948 chr5:71491946 nonsynonymous SNV 0.626 2 19 hm5C_associated_SNPs_35593 0 0 1 0 0 Cytosol 1 0.500231643921841 1 0.999536712156318 hm5C_site_35279 DeepMRMD:1;iRNA_m5C:0.999536712156318 35280 chr1 227618461 227618461 1 + G A SKCM 227618466 + 227618446 227618486 41 TCCATGCCAGTACAAGATCCCGGACTGGTTCTTGAACAGAC TCCATGCCAGTACAAAATCCCGGACTGGTTCTTGAACAGAC < 41bp 1 0.179329226596825 1 0.304710268974304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC42BPA;ZNF678 ENSG00000234277;ENSG00000242757 ncRNA_exonic Human other chr1:227618466 chr1:227618461 . . 0 16 hm5C_associated_SNPs_35594 0 0 0 0 0 unknown 1 0.500231643921735 1 0.99953671215653 hm5C_site_35280 DeepMRMD:1;iRNA_m5C:0.99953671215653 35281 chr11 86017395 86017395 1 + C T SKCM 86017414 + 86017394 86017434 41 TCCTGAGGGAATGGGAGGATCTGTCTACTTTTCTTATCCTG TTCTGAGGGAATGGGAGGATCTGTCTACTTTTCTTATCCTG < 41bp 1 0.401407526053855 1 0.18933629989624 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86017414 chr11:86017395 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_35595 0 0 1 0 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35281 DeepMRMD:1;iRNA_m5C:0.999536712157815 35282 chr12 53663155 53663155 1 + G A SKCM 53663151 + 53663131 53663171 41 TGCTCCCCAGGACTATGAGGCCGTGGCTCGGGGCAGCTTTT TGCTCCCCAGGACTATGAGGCCGTAGCTCGGGGCAGCTTTT < 41bp 1 0.213237403318513 1 0.211024135351181 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663151 chr12:53663155 synonymous SNV . 0 25 hm5C_associated_SNPs_35597 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35282 DeepMRMD:1;iRNA_m5C:0.999536712157815 35283 chr17 30694883 30694883 1 + C T SKCM 30694868 + 30694848 30694888 41 CCTGCAACAACTACAGAACCCCCAAAGCCTACATTCCCTGC CCTGCAACAACTACAGAACCCCCAAAGCCTACATTTCCTGC < 41bp 1 0.448853870093164 1 0.128404408693314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30694868 chr17:30694883 synonymous SNV . 0 36 hm5C_associated_SNPs_35598 0 0 1 4 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35283 DeepMRMD:1;iRNA_m5C:0.999536712157815 35284 chr17 18143908 18143908 1 + C T SKCM 18143895 + 18143875 18143915 41 GCGCTTGTTTTCTGCAGGGGCCCACCACGGGCCCACCATGT GCGCTTGTTTTCTGCAGGGGCCCACCACGGGCCTACCATGT < 41bp 1 0.0359524526643307 1 0.125289499759674 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143895 chr17:18143908 synonymous SNV . 0 34 hm5C_associated_SNPs_35599 0 0 1 0 1 Cytosol 1 0.50023164423005 1 0.999536711539901 hm5C_site_35284 DeepMRMD:1;iRNA_m5C:0.999536711539901 35285 chr17 18143908 18143908 1 + C T SKCM 18143896 + 18143876 18143916 41 CGCTTGTTTTCTGCAGGGGCCCACCACGGGCCCACCATGTG CGCTTGTTTTCTGCAGGGGCCCACCACGGGCCTACCATGTG < 41bp 1 0.046981228659509 1 0.0382841825485229 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143896 chr17:18143908 synonymous SNV . 0 33 hm5C_associated_SNPs_35600 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_35285 DeepMRMD:1;iRNA_m5C:0.999536712157814 35286 chr17 18143908 18143908 1 + C T SKCM 18143906 + 18143886 18143926 41 CTGCAGGGGCCCACCACGGGCCCACCATGTGGGCTGGCACC CTGCAGGGGCCCACCACGGGCCTACCATGTGGGCTGGCACC < 41bp 1 0.0128263388478446 1 0.0305661261081696 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143906 chr17:18143908 synonymous SNV . 0 23 hm5C_associated_SNPs_35602 0 0 1 0 1 Cytosol 1 0.500231643921088 1 0.999536712157824 hm5C_site_35286 DeepMRMD:1;iRNA_m5C:0.999536712157824 35287 chr17 18143908 18143908 1 + C T SKCM 18143907 + 18143887 18143927 41 TGCAGGGGCCCACCACGGGCCCACCATGTGGGCTGGCACCA TGCAGGGGCCCACCACGGGCCTACCATGTGGGCTGGCACCA < 41bp 1 0.181073517640898 1 0.0776053071022034 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143907 chr17:18143908 synonymous SNV . 0 22 hm5C_associated_SNPs_35603 0 0 1 0 1 Cytosol 1 0.500231868705825 1 0.999536262588349 hm5C_site_35287 DeepMRMD:1;iRNA_m5C:0.999536262588349 35288 chr16 27221559 27221559 1 + G A SKCM 27221576 + 27221556 27221596 41 GGGGAGAAAGTGGAGAGGAGCGTGGTGACATTGTTGCAGCG GGGAAGAAAGTGGAGAGGAGCGTGGTGACATTGTTGCAGCG < 41bp 1 0.602931193049116 1 0.632779598236084 experiment 0.794137613901769 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDM8 ENSG00000155666 CDS Human protein_coding chr16:27221576 chr16:27221559 nonsynonymous SNV 0.007 0 4 hm5C_associated_SNPs_35605 0 0 0 0 0 nucleolus 1 0.50023164255116 0.734440803527832 0.999536714897681 hm5C_site_35288 DeepMRMD:0.734440803527832;iRNA_m5C:0.999536714897681 35289 chr15 41854896 41854896 1 + C T SKCM 41854884 + 41854864 41854904 41 AACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTT AACTACGAAGATCGGGGGACCCGCTCCCTCTCTATCTGTTT < 41bp 1 0.0590978213828858 1 0.101542919874191 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854884 chr15:41854896 nonsynonymous SNV 0.993 3 33 hm5C_associated_SNPs_35606 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35289 DeepMRMD:1;iRNA_m5C:0.999536712157815 35290 chr15 41854896 41854896 1 + C T SKCM 41854885 + 41854865 41854905 41 ACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTTT ACTACGAAGATCGGGGGACCCGCTCCCTCTCTATCTGTTTT < 41bp 1 0.170755087028648 1 0.0618149638175964 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854885 chr15:41854896 nonsynonymous SNV 0.993 3 32 hm5C_associated_SNPs_35607 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_35290 DeepMRMD:1;iRNA_m5C:0.999536712157817 35291 chr7 142460361 142460361 1 + G A SKCM 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTA < 41bp 1 0.0362383936521942 1 0.123823225498199 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460361 synonymous SNV . 0 37 hm5C_associated_SNPs_35608 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35291 DeepMRMD:1;iRNA_m5C:0.999536712157815 35292 chr7 142460361 142460361 1 + G A SKCM 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTAC < 41bp 1 0.236658583912164 1 0.699200332164764 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460361 synonymous SNV . 0 36 hm5C_associated_SNPs_35609 0 0 0 0 2 Cytosol 1 0.500231642019684 0.601599335670472 0.999536715960632 hm5C_site_35292 DeepMRMD:0.601599335670472;iRNA_m5C:0.999536715960632 35293 chr7 142460361 142460361 1 + G A SKCM 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCA < 41bp 1 0.018278075752369 1 0.183378845453262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460361 synonymous SNV . 0 34 hm5C_associated_SNPs_35610 0 0 0 0 2 Cytosol 1 0.500231643854078 1 0.999536712291844 hm5C_site_35293 DeepMRMD:1;iRNA_m5C:0.999536712291844 35294 chr7 142460361 142460361 1 + G A SKCM 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCAG < 41bp 1 0.221095151307814 1 0.248469442129135 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460361 synonymous SNV . 0 33 hm5C_associated_SNPs_35611 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35294 DeepMRMD:1;iRNA_m5C:0.999536712157815 35295 chr7 142460361 142460361 1 + G A SKCM 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCAGCAA < 41bp 1 0.354150985383723 1 0.51630175113678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460361 synonymous SNV . 0 30 hm5C_associated_SNPs_35612 0 0 0 0 2 Cytosol 1 0.500231643926409 0.96739649772644 0.999536712147182 hm5C_site_35295 DeepMRMD:0.96739649772644;iRNA_m5C:0.999536712147182 35296 chr7 142460361 142460361 1 + G A SKCM 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCTACCCTGGAAAAATTACCAGCAAC < 41bp 1 0.2979375008432 1 0.564144790172577 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460361 synonymous SNV . 0 29 hm5C_associated_SNPs_35613 0 0 0 0 2 Cytosol 1 0.500231643921092 0.871710419654846 0.999536712157815 hm5C_site_35296 DeepMRMD:0.871710419654846;iRNA_m5C:0.999536712157815 35297 chr7 142460361 142460361 1 + G A SKCM 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAAATTACCAGCAACATGTTCTGTGTGG < 41bp 1 0.153825271258631 1 0.10925766825676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460361 synonymous SNV . 0 16 hm5C_associated_SNPs_35615 0 0 0 0 2 Cytosol 1 0.50023164391527 1 0.99953671216946 hm5C_site_35297 DeepMRMD:1;iRNA_m5C:0.99953671216946 35298 chr7 142460361 142460361 1 + G A SKCM 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAAATTACCAGCAACATGTTCTGTGTGGG < 41bp 1 0.650052318708825 1 0.748933672904968 experiment 0.699895362582351 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460361 synonymous SNV . 0 15 hm5C_associated_SNPs_35616 0 0 0 0 2 Cytosol 1 0.50023164394377 0.502132654190064 0.99953671211246 hm5C_site_35298 DeepMRMD:0.502132654190064;iRNA_m5C:0.99953671211246 35299 chr7 142460361 142460361 1 + G A SKCM 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAAATTACCAGCAACATGTTCTGTGTGGGCTT < 41bp 1 0.3994323876648 1 0.56414133310318 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460361 synonymous SNV . 0 12 hm5C_associated_SNPs_35617 0 0 0 0 2 Cytosol 1 0.500231643921092 0.87171733379364 0.999536712157815 hm5C_site_35299 DeepMRMD:0.87171733379364;iRNA_m5C:0.999536712157815 35300 chr7 142460361 142460361 1 + G A SKCM 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAAATTACCAGCAACATGTTCTGTGTGGGCTTCCT < 41bp 1 0.185597818056934 1 0.109185755252838 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460361 synonymous SNV . 0 9 hm5C_associated_SNPs_35618 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_35300 DeepMRMD:1;iRNA_m5C:0.999536712157815 35301 chr7 142460361 142460361 1 + G A SKCM 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAAATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG < 41bp 1 0.319793283766641 1 0.395361840724945 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460361 synonymous SNV . 0 3 hm5C_associated_SNPs_35619 0 0 0 0 2 Cytosol 1 0.500231565917755 1 0.99953686816449 hm5C_site_35301 DeepMRMD:1;iRNA_m5C:0.99953686816449 35302 chr1 183083788 183083788 1 + T G SKCM 183083799 + 183083779 183083819 41 TGTGAGAGGTGCCGAGAGAACTTCTTCCGCCTTGGCAACAA TGTGAGAGGGGCCGAGAGAACTTCTTCCGCCTTGGCAACAA < 41bp 1 0.458342430947202 1 0.33073216676712 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183083799 chr1:183083788 nonsynonymous SNV 0.994 5 10 hm5C_associated_SNPs_35620 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35302 DeepMRMD:1;iRNA_m5C:0.999536712157815 35303 chr13 111147731 111147731 1 + G A SKCM 111147745 + 111147725 111147765 41 CTCCTGGGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTT CTCCTGAGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTT < 41bp 1 0.225004114323129 1 0.457956075668335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111147745 chr13:111147731 nonsynonymous SNV 0.037 5 7 hm5C_associated_SNPs_35622 0 0 0 0 2 Cytosol 1 0.50023164392107 1 0.99953671215786 hm5C_site_35303 DeepMRMD:1;iRNA_m5C:0.99953671215786 35304 chr9 140110212 140110212 1 + C T SKCM 140110226 + 140110206 140110246 41 GTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA GTAGCCTCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA < 41bp 1 0.125315041731376 1 0.0623038709163666 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110226 chr9:140110212 nonsynonymous SNV 0.967 5 7 hm5C_associated_SNPs_35623 0 0 1 0 1 chromatin 1 0.500231644157757 1 0.999536711684487 hm5C_site_35304 DeepMRMD:1;iRNA_m5C:0.999536711684487 35305 chr9 140110213 140110213 1 + C T SKCM 140110226 + 140110206 140110246 41 GTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA GTAGCCCTCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA < 41bp 1 0.156122663390539 1 0.0685960054397583 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110226 chr9:140110213 nonsynonymous SNV 0.978 5 8 hm5C_associated_SNPs_35624 0 0 1 0 1 chromatin 1 0.500231590656381 1 0.999536818687238 hm5C_site_35305 DeepMRMD:1;iRNA_m5C:0.999536818687238 35306 chr1 36315797 36315797 1 + G A SKCM 36315787 + 36315767 36315807 41 AGTGGCAATGTACCAGCAGGCACTACAGTGGATAGTACCAT AGTGGCAATGTACCAGCAGGCACTACAGTGAATAGTACCAT < 41bp 1 0.391745543786433 1 0.218070089817047 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO4 ENSG00000134698 CDS Human protein_coding chr1:36315787 chr1:36315797 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_35625 0 0 1 0 2 Nucleus 1 0.500231643921921 1 0.999536712156158 hm5C_site_35306 DeepMRMD:1;iRNA_m5C:0.999536712156158 35307 chr19 36593925 36593925 1 + C T SKCM 36593911 + 36593891 36593931 41 TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGCGGAAGC TGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGTGGAAGC < 41bp 1 0.298493425686273 1 0.148112028837204 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593911 chr19:36593925 synonymous SNV . 0 35 hm5C_associated_SNPs_35626 0 0 1 0 2 Nucleus 1 0.500231726619456 1 0.999536546761087 hm5C_site_35307 DeepMRMD:1;iRNA_m5C:0.999536546761087 35308 chr19 36593925 36593925 1 + C T SKCM 36593920 + 36593900 36593940 41 CAGAGGTCAAGCTCATGGACCGAGGCGGAAGCCAGCCCAGA CAGAGGTCAAGCTCATGGACCGAGGTGGAAGCCAGCCCAGA < 41bp 1 0.515781656767791 1 0.878856837749481 experiment 0.968436686464419 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593920 chr19:36593925 synonymous SNV . 0 26 hm5C_associated_SNPs_35627 0 0 1 0 2 Nucleus 1 0.500231703403199 0.242286324501038 0.999536593193601 hm5C_site_35308 DeepMRMD:0.242286324501038;iRNA_m5C:0.999536593193601 35309 chr17 7606099 7606099 1 + T G SKCM 7606087 + 7606067 7606107 41 GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGTTACCCACT GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGGTACCCACT < 41bp 1 0.437309609759539 1 0.812788486480713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606087 chr17:7606099 synonymous SNV . 0 33 hm5C_associated_SNPs_35628 0 0 1 0 2 Ribosome 1 0.500231629674018 0.374423027038574 0.999536740651965 hm5C_site_35309 DeepMRMD:0.374423027038574;iRNA_m5C:0.999536740651965 35310 chr6 32134488 32134488 1 + C A SKCM 32134481 + 32134461 32134501 41 CGGGCGCTGTGTTCCAGGACCATGTACCGCGTTATGTGGCG CGGGCGCTGTGTTCCAGGACCATGTACAGCGTTATGTGGCG < 41bp 1 0.182727591193235 1 0.230437338352203 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134481 chr6:32134488 nonsynonymous SNV 0.224 1 28 hm5C_associated_SNPs_35629 0 0 1 0 2 chromatin 1 0.500231943314076 1 0.999536113371849 hm5C_site_35310 DeepMRMD:1;iRNA_m5C:0.999536113371849 35311 chr17 7606100 7606100 1 + T G SKCM 7606087 + 7606067 7606107 41 GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGTTACCCACT GAGCTCCTGTGCTGGGATCTCCGGCAGTCTGGTGACCCACT < 41bp 1 0.444248880225061 1 0.882537722587585 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606087 chr17:7606100 nonsynonymous SNV 0.605 0 34 hm5C_associated_SNPs_35630 0 0 1 0 2 Ribosome 1 0.500231652226142 0.23492455482483 0.999536695547715 hm5C_site_35311 DeepMRMD:0.23492455482483;iRNA_m5C:0.999536695547715 35312 chr10 103310575 103310575 1 + C T SKCM 103310555 + 103310535 103310575 41 TCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACCC TCTGGGACTTCCTAAATGATCCAGCTGCCCAAGCTGAACCT < 41bp 1 0.328682282603454 1 0.189607858657837 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTRC ENSG00000166167 CDS Human protein_coding chr10:103310555 chr10:103310575 synonymous SNV . 0 41 hm5C_associated_SNPs_35631 0 0 0 0 1 chromatin 1 0.50023164365987 1 0.999536712680259 hm5C_site_35312 DeepMRMD:1;iRNA_m5C:0.999536712680259 35313 chr21 42629153 42629153 1 + C T SKCM 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCTACAAATGCGCTGGTGATCGGTGCCACGGTG < 41bp 1 0.549117451406282 1 0.285783290863037 experiment 0.901765097187436 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629153 synonymous SNV . 0 11 hm5C_associated_SNPs_35632 0 0 1 0 1 Ribosome 1 0.500231643921109 1 0.999536712157782 hm5C_site_35313 DeepMRMD:1;iRNA_m5C:0.999536712157782 35314 chr17 41345575 41345575 1 + C T SKCM 41345576 + 41345556 41345596 41 TATCATAGTAGATCCTTTCCCCTCCGAAGAGAGCCCTGATA TATCATAGTAGATCCTTTCTCCTCCGAAGAGAGCCCTGATA < 41bp 1 0.185243430283763 1 0.334711968898773 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41345576 chr17:41345575 nonsynonymous SNV 0.736 0 20 hm5C_associated_SNPs_35633 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35314 DeepMRMD:1;iRNA_m5C:0.999536712157815 35315 chr19 36278120 36278120 1 + C T SKCM 36278132 + 36278112 36278152 41 TCCTGCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC TCCTGCGCTCTGGGGGTGCCCCACCCCCGCCCCCTAAGAAC < 41bp 1 0.181628405302086 1 0.392002522945404 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278132 chr19:36278120 nonsynonymous SNV 0.978 3 9 hm5C_associated_SNPs_35634 0 0 1 0 1 chromatin 1 0.500231643921094 1 0.999536712157813 hm5C_site_35315 DeepMRMD:1;iRNA_m5C:0.999536712157813 35316 chr11 10772987 10772987 1 + C T SKCM 10772973 + 10772953 10772993 41 CCCCATCATGTCGCGGGGCTCCATCGAGATTCCCCTCCGGG CCCCATCATGTCGCGGGGCTCCATCGAGATTCCCTTCCGGG < 41bp 1 0.12618161318148 1 0.111461788415909 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10772973 chr11:10772987 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_35635 0 0 1 0 1 Cytosol 1 0.500231643535141 1 0.999536712929718 hm5C_site_35316 DeepMRMD:1;iRNA_m5C:0.999536712929718 35317 chr20 5154287 5154287 1 + T G SKCM 5154273 + 5154253 5154293 41 GCAGATGATACCCCGGAGGTCCTCAATAGGGCCCTTTCCAA GCAGATGATACCCCGGAGGTCCTCAATAGGGCCCGTTCCAA < 41bp 1 0.180700312387935 1 0.0490334033966064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDS2 ENSG00000101290 CDS Human protein_coding chr20:5154273 chr20:5154287 nonsynonymous SNV 0.994 4 35 hm5C_associated_SNPs_35636 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35317 DeepMRMD:1;iRNA_m5C:0.999536712157815 35318 chr1 37947358 37947358 1 + G C SKCM 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATCGTGGTTTCCAACGACACATACCCTGACCTCCAAGG < 41bp 1 0.247980611204074 1 0.320084095001221 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947358 nonsynonymous SNV 0.809 4 29 hm5C_associated_SNPs_35637 0 0 0 0 1 Nucleus 1 0.500231643925877 1 0.999536712148245 hm5C_site_35318 DeepMRMD:1;iRNA_m5C:0.999536712148245 35319 chr1 37947358 37947358 1 + G C SKCM 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATCGTGGTTTCCAACGACACATACCCTGACCTCCAAGGCG < 41bp 1 0.119555218476951 1 0.205760896205902 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947358 nonsynonymous SNV 0.809 4 27 hm5C_associated_SNPs_35638 0 0 0 0 1 Nucleus 1 0.500231643922044 1 0.999536712155911 hm5C_site_35319 DeepMRMD:1;iRNA_m5C:0.999536712155911 35320 chr6 36569554 36569554 1 + C T SKCM 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCGTCCCGATCTTTCTCTAGGTCTCGTAGGT < 41bp 1 0.0682784626393275 1 0.0434295535087585 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569554 synonymous SNV . 0 22 hm5C_associated_SNPs_35639 0 0 1 0 2 Ribosome 1 0.500231644636473 1 0.999536710727054 hm5C_site_35320 DeepMRMD:1;iRNA_m5C:0.999536710727054 35321 chr9 130575601 130575601 1 + C T SKCM 130575587 + 130575567 130575607 41 GCCCGGACCTCTGGAGTGCCCCCAGCCCAGAGCCCGGTGGG GCCCGGACCTCTGGAGTGCCCCCAGCCCAGAGCCTGGTGGG < 41bp 1 0.562431965286441 1 0.327288508415222 experiment 0.875136069427118 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130575587 chr9:130575601 synonymous SNV . 0 35 hm5C_associated_SNPs_35640 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35321 DeepMRMD:1;iRNA_m5C:0.999536712157815 35322 chr3 183899730 183899730 1 + C T SKCM 183899728 + 183899708 183899748 41 CAACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTA CAACCAAGGACATCATCCTTCCTTTCCGGGTGATCCCGCTA < 41bp 1 0.0354652148700646 1 0.0369618237018585 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899728 chr3:183899730 synonymous SNV . 0 23 hm5C_associated_SNPs_35641 0 0 1 0 1 Ribosome 1 0.500231645233205 1 0.99953670953359 hm5C_site_35322 DeepMRMD:1;iRNA_m5C:0.99953670953359 35323 chr3 183899730 183899730 1 + C T SKCM 183899729 + 183899709 183899749 41 AACCAAGGACATCATCCTTCCCTTCCGGGTGATCCCGCTAG AACCAAGGACATCATCCTTCCTTTCCGGGTGATCCCGCTAG < 41bp 1 0.0867653719818167 1 0.037486732006073 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183899729 chr3:183899730 synonymous SNV . 0 22 hm5C_associated_SNPs_35642 0 0 1 0 1 Ribosome 1 0.500231643921312 1 0.999536712157377 hm5C_site_35323 DeepMRMD:1;iRNA_m5C:0.999536712157377 35324 chr5 140731332 140731332 1 + C T SKCM 140731316 + 140731296 140731336 41 GTGACCTGGAGCCGCGGGAGCTGTTGTCCTACGTGTCCGTG GTGACCTGGAGCCGCGGGAGCTGTTGTCCTACGTGTTCGTG < 41bp 1 0.197751359481782 1 0.0668373107910156 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHGB1 ENSG00000254221 CDS Human protein_coding chr5:140731316 chr5:140731332 nonsynonymous SNV 0.315 3 37 hm5C_associated_SNPs_35644 0 0 1 0 0 exosome 1 0.500231643921117 1 0.999536712157765 hm5C_site_35324 DeepMRMD:1;iRNA_m5C:0.999536712157765 35325 chr1 17272860 17272860 1 + T C SKCM 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCCTGC < 41bp 1 0.161673112026895 1 0.0517536401748657 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272860 nonsynonymous SNV 0.974 3 38 hm5C_associated_SNPs_35645 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35325 DeepMRMD:1;iRNA_m5C:0.999536712157815 35326 chr11 17316984 17316984 1 + C T SKCM 17316973 + 17316953 17316993 41 ACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGGAA ACATAGACAAGACAAAAGTACAAAATATTCATCCTGTGGAA < 41bp 1 0.673479078931092 1 0.0749988257884979 experiment 0.653041842137816 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316973 chr11:17316984 synonymous SNV . 0 32 hm5C_associated_SNPs_35646 0 0 1 0 1 Ribosome 1 0.500231633724364 1 0.999536732551273 hm5C_site_35326 DeepMRMD:1;iRNA_m5C:0.999536732551273 35327 chr9 130575600 130575600 1 + C T SKCM 130575587 + 130575567 130575607 41 GCCCGGACCTCTGGAGTGCCCCCAGCCCAGAGCCCGGTGGG GCCCGGACCTCTGGAGTGCCCCCAGCCCAGAGCTCGGTGGG < 41bp 1 0.552458603311478 1 0.247526675462723 experiment 0.895082793377043 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130575587 chr9:130575600 nonsynonymous SNV 0.007 0 34 hm5C_associated_SNPs_35647 0 0 0 0 0 Cytosol 1 0.500231643920937 1 0.999536712158125 hm5C_site_35327 DeepMRMD:1;iRNA_m5C:0.999536712158125 35328 chr19 32973073 32973073 1 + C T SKCM 32973083 + 32973063 32973103 41 AACCTGCCTCCCTACGTGGCCTACTTCACCAGAGTGTTCCA AACCTGCCTCTCTACGTGGCCTACTTCACCAGAGTGTTCCA < 41bp 1 0.215080503222541 1 0.114098608493805 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32973083 chr19:32973073 nonsynonymous SNV 0.845 1 11 hm5C_associated_SNPs_35649 0 0 1 0 1 cytosol 1 0.500231644072944 1 0.999536711854112 hm5C_site_35328 DeepMRMD:1;iRNA_m5C:0.999536711854112 35329 chr1 7861197 7861197 1 + G A SKCM 7861204 + 7861184 7861224 41 CCAGTGAATAAAAGAATCTTCACCACCACACACACCCCAGG CCAGTGAATAAAAAAATCTTCACCACCACACACACCCCAGG < 41bp 1 0.552711925853122 1 0.326146960258484 experiment 0.894576148293755 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PER3 ENSG00000049246 CDS Human protein_coding chr1:7861204 chr1:7861197 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_35650 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35329 DeepMRMD:1;iRNA_m5C:0.999536712157815 35330 chr2 220355655 220355655 1 + G A SKCM 220355636 + 220355616 220355656 41 AGCCCTACAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGC AGCCCTACAACCCCCAGGCCCTTAGGCCCCTTGGCCACCAC < 41bp 1 0.106307695565093 1 0.071961373090744 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355636 chr2:220355655 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_35651 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35330 DeepMRMD:1;iRNA_m5C:0.999536712157815 35331 chr2 220355655 220355655 1 + G A SKCM 220355643 + 220355623 220355663 41 CAACCCCCAGGCCCTTAGGCCCCTTGGCCACCGCACGGGCA CAACCCCCAGGCCCTTAGGCCCCTTGGCCACCACACGGGCA < 41bp 1 0.0208127689954813 1 0.0447937548160553 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220355643 chr2:220355655 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_35652 0 0 0 0 1 Nucleus 1 0.500231616125092 1 0.999536767749816 hm5C_site_35331 DeepMRMD:1;iRNA_m5C:0.999536767749816 35332 chr10 105048248 105048248 1 + C T SKCM 105048230 + 105048210 105048250 41 ACCTAGAATCCTCAGTGCTACAACCTCCAAAGTCTCATCCA ACCTAGAATCCTCAGTGCTACAACCTCCAAAGTCTCATTCA < 41bp 1 0.280048665348192 1 0.206360012292862 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INA ENSG00000148798 CDS Human protein_coding chr10:105048230 chr10:105048248 nonsynonymous SNV 0.823 2 39 hm5C_associated_SNPs_35653 0 0 1 0 0 exosome 1 0.500231644109572 1 0.999536711780857 hm5C_site_35332 DeepMRMD:1;iRNA_m5C:0.999536711780857 35333 chr10 123845439 123845439 1 + G A SKCM 123845420 + 123845400 123845440 41 GCTGCTGAGACTGGTGGCAGCGCTGGTGCAGGAGACCCAGG GCTGCTGAGACTGGTGGCAGCGCTGGTGCAGGAGACCCAAG < 41bp 1 0.403695847928406 1 0.834616601467133 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TACC2 ENSG00000138162 CDS Human protein_coding chr10:123845420 chr10:123845439 nonsynonymous SNV 0.000 0 40 hm5C_associated_SNPs_35654 0 0 0 0 0 Cytoplasm 1 0.500232979982815 0.330766797065734 0.999534040034369 hm5C_site_35333 DeepMRMD:0.330766797065734;iRNA_m5C:0.999534040034369 35334 chr17 16332214 16332214 1 + C T SKCM 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGCTTGTGTCTGTGCTGGTGCTGGGCTGGC < 41bp 1 0.434288688721578 1 0.274672657251358 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332214 nonsynonymous SNV 0.320 3 24 hm5C_associated_SNPs_35655 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921324 1 0.999536712157351 hm5C_site_35334 DeepMRMD:1;iRNA_m5C:0.999536712157351 35335 chr15 93496705 93496705 1 + C T SKCM 93496712 + 93496692 93496732 41 TCTTATAGTCGTCCCTTTATCCACCCTCACCTCATGGCAGA TCTTATAGTCGTCTCTTTATCCACCCTCACCTCATGGCAGA < 41bp 1 0.204565257136885 1 0.780890285968781 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93496712 chr15:93496705 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_35656 0 0 1 0 1 Nucleus 1 0.500231643926723 0.438219428062438 0.999536712146554 hm5C_site_35335 DeepMRMD:0.438219428062438;iRNA_m5C:0.999536712146554 35336 chr7 142460392 142460392 1 + C T SKCM 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCTT < 41bp 1 0.237310671379042 1 0.0893510282039642 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460392 nonsynonymous SNV 0.068 5 40 hm5C_associated_SNPs_35658 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_35336 DeepMRMD:1;iRNA_m5C:0.999536712157814 35337 chr7 142460392 142460392 1 + C T SKCM 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGCAACATGTTCTGTGTGGGCTTCTTTGAGGG < 41bp 1 0.308639076920352 1 0.542150378227234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460392 nonsynonymous SNV 0.068 5 34 hm5C_associated_SNPs_35659 0 0 0 0 1 Cytosol 1 0.500231643771316 0.915699243545532 0.999536712457367 hm5C_site_35337 DeepMRMD:0.915699243545532;iRNA_m5C:0.999536712457367 35338 chr7 142460392 142460392 1 + C T SKCM 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTCTGTGTGGGCTTCTTTGAGGGAGGCAAGGA < 41bp 1 0.187324027844924 1 0.0771230757236481 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460392 nonsynonymous SNV 0.068 5 25 hm5C_associated_SNPs_35660 0 0 0 0 1 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_35338 DeepMRMD:1;iRNA_m5C:0.999536712157808 35339 chr7 142460392 142460392 1 + C T SKCM 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTCTGTGTGGGCTTCTTTGAGGGAGGCAAGGATTC < 41bp 1 0.0881245383952227 1 0.189263254404068 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460392 nonsynonymous SNV 0.068 5 22 hm5C_associated_SNPs_35661 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35339 DeepMRMD:1;iRNA_m5C:0.999536712157815 35340 chr7 142460392 142460392 1 + C T SKCM 142460403 + 142460383 142460423 41 GTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGTGAT GTGGGCTTCTTTGAGGGAGGCAAGGATTCATGTCAGGTGAT < 41bp 1 0.536484735386141 1 0.392169713973999 experiment 0.927030529227717 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460403 chr7:142460392 nonsynonymous SNV 0.068 5 10 hm5C_associated_SNPs_35662 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35340 DeepMRMD:1;iRNA_m5C:0.999536712157815 35341 chr7 142460392 142460392 1 + C T SKCM 142460411 + 142460391 142460431 41 CCTTGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA CTTTGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA < 41bp 1 0.503879286855714 1 0.242304503917694 experiment 0.992241426288571 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460411 chr7:142460392 nonsynonymous SNV 0.068 5 2 hm5C_associated_SNPs_35663 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_35341 DeepMRMD:1;iRNA_m5C:0.999536712157815 35342 chr16 29851524 29851524 1 + C T SKCM 29851532 + 29851512 29851552 41 TTTTCCTCCAGCCAGGAGAGCAGCTGGAACAAGGCATCCAG TTTTCCTCCAGCTAGGAGAGCAGCTGGAACAAGGCATCCAG < 41bp 1 0.426839661730093 1 0.483132392168045 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29851532 chr16:29851524 nonsynonymous SNV 0.984 2 13 hm5C_associated_SNPs_35665 0 0 1 1 2 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_35342 DeepMRMD:1;iRNA_m5C:0.999536712157818 35343 chr14 69704381 69704381 1 + C T SKCM 69704365 + 69704345 69704385 41 ACCACAACTCCCACGATGTGCTGCTGCTCTGCACCTCCTGC ACCACAACTCCCACGATGTGCTGCTGCTCTGCACCTTCTGC < 41bp 1 0.484751882825781 1 0.0944666266441345 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EXD2 ENSG00000081177 CDS Human protein_coding chr14:69704365 chr14:69704381 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_35666 0 0 1 0 1 Ribosome 1 0.50023236699062 1 0.999535266018761 hm5C_site_35343 DeepMRMD:1;iRNA_m5C:0.999535266018761 35344 chrX 47442821 47442821 1 + C T SKCM 47442822 + 47442802 47442842 41 CACAGAACCCACCATGGCCCCCTTTGAGCCCCTGGCTTCTG CACAGAACCCACCATGGCCTCCTTTGAGCCCCTGGCTTCTG < 41bp 1 0.0670842914147887 1 0.0358971357345581 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TIMP1 ENSG00000102265 CDS Human protein_coding chrX:47442822 chrX:47442821 nonsynonymous SNV 0.103 1 20 hm5C_associated_SNPs_35667 0 0 1 0 1 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_35344 DeepMRMD:1;iRNA_m5C:0.99953671215782 35345 chr6 43153909 43153909 1 + C T SKCM 43153923 + 43153903 43153943 41 CGGAACCTCAGCGAACAGGGCATGTCACCTCCCCGGCCAAC CGGAACTTCAGCGAACAGGGCATGTCACCTCCCCGGCCAAC < 41bp 1 0.153914047924779 1 0.173797607421875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43153923 chr6:43153909 nonsynonymous SNV 0.970 1 7 hm5C_associated_SNPs_35668 0 0 1 0 0 chromatin 1 0.500230712167032 1 0.999538575665936 hm5C_site_35345 DeepMRMD:1;iRNA_m5C:0.999538575665936 35346 chr9 138678108 138678108 1 + C T SKCM 138678113 + 138678093 138678133 41 GGGGCCCTGGGGCTCCCGCGCTGGCACCGGAGGCAGCTCCC GGGGCCCTGGGGCTCTCGCGCTGGCACCGGAGGCAGCTCCC < 41bp 1 0.654720850662054 1 0.417216897010803 experiment 0.690558298675893 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138678113 chr9:138678108 synonymous SNV . 0 16 hm5C_associated_SNPs_35669 0 0 0 0 1 exosome 1 0.500231643922337 1 0.999536712155326 hm5C_site_35346 DeepMRMD:1;iRNA_m5C:0.999536712155326 35347 chr11 46747451 46747451 1 + G A SKCM 46747436 + 46747416 46747456 41 TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGGCTCCA TCAAGTCACTGTAGCGATGACTCCACGCTCCGAAGACTCCA < 41bp 1 0.681105693264752 1 0.950963020324707 experiment 0.637788613470496 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control F2 ENSG00000180210 CDS Human protein_coding chr11:46747436 chr11:46747451 nonsynonymous SNV 0.003 1 36 hm5C_associated_SNPs_35670 0 0 1 0 1 cytosol 1 0.500231758971807 0.0980739593505859 0.999536482056385 hm5C_site_35347 DeepMRMD:0.0980739593505859;iRNA_m5C:0.999536482056385 35348 chr1 32620255 32620255 1 + C T SKCM 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATGCTCTAAACCTTGAAGAAATGA < 41bp 1 0.301764287226811 1 0.153964400291443 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620255 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_35671 0 0 1 0 2 Cytosol 1 0.500231643919873 1 0.999536712160254 hm5C_site_35348 DeepMRMD:1;iRNA_m5C:0.999536712160254 35349 chr1 32620255 32620255 1 + C T SKCM 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATGCTCTAAACCTTGAAGAAATGAGA < 41bp 1 0.265400342327872 1 0.15167760848999 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620255 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_35672 0 0 1 0 2 Cytosol 1 0.500231643882196 1 0.999536712235609 hm5C_site_35349 DeepMRMD:1;iRNA_m5C:0.999536712235609 35350 chr1 32620255 32620255 1 + C T SKCM 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCTTGAAGAAATGAGACGAAG < 41bp 1 0.07679945085659 1 0.132913112640381 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620255 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_35673 0 0 1 0 2 Cytosol 1 0.500231635495504 1 0.999536729008991 hm5C_site_35350 DeepMRMD:1;iRNA_m5C:0.999536729008991 35351 chr1 32620255 32620255 1 + C T SKCM 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCTTGAAGAAATGAGACGAAGA < 41bp 1 0.532764665974814 1 0.416230797767639 experiment 0.934470668050372 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620255 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_35674 0 0 1 0 2 Cytosol 1 0.500232287696347 1 0.999535424607306 hm5C_site_35351 DeepMRMD:1;iRNA_m5C:0.999535424607306 35352 chr17 36873075 36873075 1 + T C SKCM 36873079 + 36873059 36873099 41 CCCAGCTGCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCT CCCAGCTGCCCCATCCCTGCCCAGTGCCCAGCTGGCTGGCT < 41bp 1 0.170251089041877 1 0.278382182121277 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873079 chr17:36873075 synonymous SNV . 0 17 hm5C_associated_SNPs_35675 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_35352 DeepMRMD:1;iRNA_m5C:0.999536712157815 35353 chr17 36873075 36873075 1 + T C SKCM 36873080 + 36873060 36873100 41 CCAGCTGCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTT CCAGCTGCCCCATCCCTGCCCAGTGCCCAGCTGGCTGGCTT < 41bp 1 0.324002257459941 1 0.0818459987640381 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873080 chr17:36873075 synonymous SNV . 0 16 hm5C_associated_SNPs_35676 0 0 1 0 0 chromatin 1 0.500231643973149 1 0.999536712053703 hm5C_site_35353 DeepMRMD:1;iRNA_m5C:0.999536712053703 35354 chr17 36873075 36873075 1 + T C SKCM 36873085 + 36873065 36873105 41 TGCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCG TGCCCCATCCCTGCCCAGTGCCCAGCTGGCTGGCTTTACCG < 41bp 1 0.112810467057965 1 0.0345004498958588 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873085 chr17:36873075 synonymous SNV . 0 11 hm5C_associated_SNPs_35677 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35354 DeepMRMD:1;iRNA_m5C:0.999536712157815 35355 chr17 36873075 36873075 1 + T C SKCM 36873086 + 36873066 36873106 41 GCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCGC GCCCCATCCCTGCCCAGTGCCCAGCTGGCTGGCTTTACCGC < 41bp 1 0.117609826793095 1 0.111784160137177 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873086 chr17:36873075 synonymous SNV . 0 10 hm5C_associated_SNPs_35678 0 0 1 0 0 chromatin 1 0.500231643923414 1 0.999536712153171 hm5C_site_35355 DeepMRMD:1;iRNA_m5C:0.999536712153171 35356 chr17 36873075 36873075 1 + T C SKCM 36873087 + 36873067 36873107 41 CCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCGCC CCCCATCCCTGCCCAGTGCCCAGCTGGCTGGCTTTACCGCC < 41bp 1 0.375301342372168 1 0.438551694154739 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLLT6 ENSG00000108292 CDS Human other chr17:36873087 chr17:36873075 synonymous SNV . 0 9 hm5C_associated_SNPs_35679 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35356 DeepMRMD:1;iRNA_m5C:0.999536712157815 35357 chr5 140516557 140516557 1 + C T SKCM 140516546 + 140516526 140516566 41 TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTC TCCATCAACGCGGACAACGGCCACCTGTTTGTCCTCAGGTC < 41bp 1 0.148759676502722 1 0.0972366631031036 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140516546 chr5:140516557 nonsynonymous SNV 0.549 0 32 hm5C_associated_SNPs_35680 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921112 1 0.999536712157777 hm5C_site_35357 DeepMRMD:1;iRNA_m5C:0.999536712157777 35358 chr6 44121498 44121498 1 + C T SKCM 44121489 + 44121469 44121509 41 TACCTGCCGGCCAAGCTGGACAAGAAGATCCACTCGGGGGC TACCTGCCGGCCAAGCTGGACAAGAAGATTCACTCGGGGGC < 41bp 1 0.688837150187868 1 0.370048314332962 experiment 0.622325699624264 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44121489 chr6:44121498 synonymous SNV . 0 30 hm5C_associated_SNPs_35681 0 0 1 0 2 Ribosome 1 0.500231881214899 1 0.999536237570203 hm5C_site_35358 DeepMRMD:1;iRNA_m5C:0.999536237570203 35359 chr3 148714585 148714585 1 + C A SKCM 148714596 + 148714576 148714616 41 AGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCCGGAG AGCACCAGAACCAGGGTGGCCTGACTGCTTCAATTCCGGAG < 41bp 1 0.405980559485882 1 0.335074067115784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714596 chr3:148714585 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_35682 0 0 0 0 2 Cytosol 1 0.500231645580641 1 0.999536708838717 hm5C_site_35359 DeepMRMD:1;iRNA_m5C:0.999536708838717 35360 chr11 76892609 76892609 1 + G A SKCM 76892615 + 76892595 76892635 41 GCCTGCCAGGCCAGGAGGGCCAGGCACCTAGTGGCTTTGAG GCCTGCCAGGCCAGAAGGGCCAGGCACCTAGTGGCTTTGAG < 41bp 1 0.281358033160488 1 0.527286410331726 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO7A ENSG00000137474 CDS Human protein_coding chr11:76892615 chr11:76892609 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_35683 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921047 0.945427179336548 0.999536712157905 hm5C_site_35360 DeepMRMD:0.945427179336548;iRNA_m5C:0.999536712157905 35361 chr3 47041163 47041163 1 + C T SKCM 47041164 + 47041144 47041184 41 TGGCTGTGGTACAGCTGTCCCTCCAGGCTGACCTCAGCGTT TGGCTGTGGTACAGCTGTCTCTCCAGGCTGACCTCAGCGTT < 41bp 1 0.686610638846366 1 0.966305732727051 experiment 0.626778722307268 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041164 chr3:47041163 synonymous SNV . 0 20 hm5C_associated_SNPs_35684 0 0 1 0 2 Nucleus 1 0.500236711069126 0.067388534545898 0.999526577861748 hm5C_site_35361 DeepMRMD:0.067388534545898;iRNA_m5C:0.999526577861748 35362 chr20 44506581 44506581 1 + G A SKCM 44506564 + 44506544 44506584 41 GCCACTGAAGTCCAAGAAGGCTTTTGGAATCTGTGGAGAGA GCCACTGAAGTCCAAGAAGGCTTTTGGAATCTGTGGAAAGA < 41bp 1 0.0786280971244104 1 0.154126882553101 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZSWIM3 ENSG00000132801 CDS Human protein_coding chr20:44506564 chr20:44506581 nonsynonymous SNV 0.001 0 38 hm5C_associated_SNPs_35685 0 0 0 0 0 Cytosol 1 0.5002316439211 1 0.999536712157801 hm5C_site_35362 DeepMRMD:1;iRNA_m5C:0.999536712157801 35363 chr3 58118610 58118610 1 + G A SKCM 58118613 + 58118593 58118633 41 CACCCCATCTCAGGAGGGACCTTACATGGTCTCAGTTAAAT CACCCCATCTCAGGAGGAACCTTACATGGTCTCAGTTAAAT < 41bp 1 0.0256120464443696 1 0.361643612384796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58118613 chr3:58118610 nonsynonymous SNV 0.994 5 18 hm5C_associated_SNPs_35687 0 0 1 0 2 Cytosol 1 0.500231643921089 1 0.999536712157823 hm5C_site_35363 DeepMRMD:1;iRNA_m5C:0.999536712157823 35364 chr17 48153021 48153021 1 + C T SKCM 48153033 + 48153013 48153053 41 CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT CGCTTTGCTGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT < 41bp 1 0.336294641556089 1 0.293543040752411 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153033 chr17:48153021 synonymous SNV . 0 9 hm5C_associated_SNPs_35688 0 0 0 0 2 Cytosol 1 0.500231644688331 1 0.999536710623337 hm5C_site_35364 DeepMRMD:1;iRNA_m5C:0.999536710623337 35365 chr9 131669673 131669673 1 + C T SKCM 131669678 + 131669658 131669698 41 GGGCAGCCCCTGGCCCGGAGCCCACCTACCCCAACTCCACC GGGCAGCCCCTGGCCTGGAGCCCACCTACCCCAACTCCACC < 41bp 1 0.103356861681411 1 0.140166372060776 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC8A ENSG00000136802 CDS Human protein_coding chr9:131669678 chr9:131669673 nonsynonymous SNV 0.519 0 16 hm5C_associated_SNPs_35689 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921081 1 0.999536712157838 hm5C_site_35365 DeepMRMD:1;iRNA_m5C:0.999536712157838 35366 chr19 18971135 18971135 1 + C T SKCM 18971127 + 18971107 18971147 41 TACTTCTTTCCCTCCCCTCACAGCGGATCGTGTGAAGAAGG TACTTCTTTCCCTCCCCTCACAGCGGATTGTGTGAAGAAGG < 41bp 1 0.131877184868357 1 0.256570786237717 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18971127 chr19:18971135 nonsynonymous SNV 0.993 5 29 hm5C_associated_SNPs_35690 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35366 DeepMRMD:1;iRNA_m5C:0.999536712157815 35367 chr14 56078982 56078982 1 + C T SKCM 56078994 + 56078974 56079014 41 GGAAACCTCCATGAATCCGACTCTGAGAGTGTACCTCGAGA GGAAACCTTCATGAATCCGACTCTGAGAGTGTACCTCGAGA < 41bp 1 0.241261156816847 1 0.0705785751342773 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56078994 chr14:56078982 synonymous SNV . 0 9 hm5C_associated_SNPs_35691 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35367 DeepMRMD:1;iRNA_m5C:0.999536712157815 35368 chr10 103347150 103347150 1 + G A SKCM 103347146 - 103347126 103347166 41 CAGCAGCCCTGACCAACGCTCCAATAGGCCGGGATCCAGCC CAGCAGCCCTGACCAATGCTCCAATAGGCCGGGATCCAGCC < 41bp 1 0.294678828604122 1 0.0874148309230804 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLL ENSG00000166169;ENSG00000166171 UTR5 Human other chr10:103347146 chr10:103347150 . . 0 17 hm5C_associated_SNPs_35692 0 0 1 0 1 chromatin 1 0.500231643951596 1 0.999536712096808 hm5C_site_35368 DeepMRMD:1;iRNA_m5C:0.999536712096808 35369 chr2 85280376 85280376 1 + T G SKCM 85280356 + 85280336 85280376 41 GCCTGTTTGTCCAAGAGCTCCTTCTGTCCACTTTAGTGCGT GCCTGTTTGTCCAAGAGCTCCTTCTGTCCACTTTAGTGCGG < 41bp 1 0.27304521480691 1 0.0418373048305511 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KCMF1 ENSG00000176407 CDS Human protein_coding chr2:85280356 chr2:85280376 synonymous SNV . 0 41 hm5C_associated_SNPs_35693 0 0 1 0 0 Cytosol 1 0.500231643828553 1 0.999536712342894 hm5C_site_35369 DeepMRMD:1;iRNA_m5C:0.999536712342894 35370 chr1 228451886 228451886 1 + C T SKCM 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGCGGGGACCAGTGTCACGCTGAGCTGCGA < 41bp 1 0.121641165550238 1 0.742093563079834 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451886 nonsynonymous SNV 0.124 3 26 hm5C_associated_SNPs_35694 0 0 0 0 1 Ribosome 1 0.500231662608418 0.515812873840332 0.999536674783165 hm5C_site_35370 DeepMRMD:0.515812873840332;iRNA_m5C:0.999536674783165 35371 chr7 100210448 100210448 1 + G A SKCM 100210428 + 100210408 100210448 41 AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGG AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGA < 41bp 1 0.401941652838826 1 0.201620817184448 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210428 chr7:100210448 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_35695 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35371 DeepMRMD:1;iRNA_m5C:0.999536712157815 35372 chr7 100210448 100210448 1 + G A SKCM 100210430 + 100210410 100210450 41 CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTG CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGATG < 41bp 1 0.682503788097016 1 0.116262555122375 experiment 0.634992423805967 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210430 chr7:100210448 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_35696 0 0 1 0 1 Cytosol 1 0.500231643921088 1 0.999536712157825 hm5C_site_35372 DeepMRMD:1;iRNA_m5C:0.999536712157825 35373 chr7 100210448 100210448 1 + G A SKCM 100210431 + 100210411 100210451 41 CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGG CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGATGG < 41bp 1 0.497750840801774 1 0.623031556606293 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210431 chr7:100210448 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_35697 0 0 1 0 1 Cytosol 1 0.500231658187225 0.753936886787414 0.999536683625549 hm5C_site_35373 DeepMRMD:0.753936886787414;iRNA_m5C:0.999536683625549 35374 chr7 100210448 100210448 1 + G A SKCM 100210432 + 100210412 100210452 41 TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGG TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGATGGG < 41bp 1 0.563773926568951 1 0.786584079265594 experiment 0.872452146862098 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210432 chr7:100210448 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_35698 0 0 1 0 1 Cytosol 1 0.500231643920991 0.426831841468812 0.999536712158019 hm5C_site_35374 DeepMRMD:0.426831841468812;iRNA_m5C:0.999536712158019 35375 chr7 100210448 100210448 1 + G A SKCM 100210460 + 100210440 100210480 41 AGGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG AGGAGCTGATGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG < 41bp 1 0.256448140971733 1 0.175878494977951 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210460 chr7:100210448 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_35699 0 0 1 0 1 Cytosol 1 0.500231643926042 1 0.999536712147915 hm5C_site_35375 DeepMRMD:1;iRNA_m5C:0.999536712147915 35376 chr7 100210448 100210448 1 + G A SKCM 100210461 + 100210441 100210481 41 GGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG GGAGCTGATGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG < 41bp 1 0.426946353863407 1 0.0667397975921631 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210461 chr7:100210448 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_35700 0 0 1 0 1 Cytosol 1 0.500231643921102 1 0.999536712157796 hm5C_site_35376 DeepMRMD:1;iRNA_m5C:0.999536712157796 35377 chr7 100210448 100210448 1 + G A SKCM 100210462 + 100210442 100210482 41 GAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG GAGCTGATGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG < 41bp 1 0.433786834256208 1 0.417752325534821 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210462 chr7:100210448 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_35701 0 0 1 0 1 Cytosol 1 0.500231649952121 1 0.999536700095757 hm5C_site_35377 DeepMRMD:1;iRNA_m5C:0.999536700095757 35378 chr7 100210448 100210448 1 + G A SKCM 100210463 + 100210443 100210483 41 AGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGGC AGCTGATGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGGC < 41bp 1 0.691536719107778 1 0.429372638463974 experiment 0.616926561784443 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210463 chr7:100210448 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_35702 0 0 1 0 1 Cytosol 1 0.500231643733377 1 0.999536712533245 hm5C_site_35378 DeepMRMD:1;iRNA_m5C:0.999536712533245 35379 chr5 5463406 5463406 1 + C T SKCM 5463400 + 5463380 5463420 41 CTCATCACATGCTTCAGAACCAACCCCACAAGCAGCTGCCT CTCATCACATGCTTCAGAACCAACCCTACAAGCAGCTGCCT < 41bp 1 0.263573617019064 1 0.302470147609711 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ICE1 ENSG00000164151 CDS Human protein_coding chr5:5463400 chr5:5463406 nonsynonymous SNV 0.000 1 27 hm5C_associated_SNPs_35703 0 0 1 0 0 Nucleus 1 0.500104065489468 1 0.999791869021063 hm5C_site_35379 DeepMRMD:1;iRNA_m5C:0.999791869021063 35380 chr7 100210447 100210447 1 + G A SKCM 100210428 + 100210408 100210448 41 AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGG AGCCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTAG < 41bp 1 0.412937933299433 1 0.261059105396271 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210428 chr7:100210447 synonymous SNV . 0 40 hm5C_associated_SNPs_35704 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35380 DeepMRMD:1;iRNA_m5C:0.999536712157815 35381 chr7 100210447 100210447 1 + G A SKCM 100210430 + 100210410 100210450 41 CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTG CCTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTAGTG < 41bp 1 0.693965991203735 1 0.080296665430069 experiment 0.61206801759253 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210430 chr7:100210447 synonymous SNV . 0 38 hm5C_associated_SNPs_35705 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35381 DeepMRMD:1;iRNA_m5C:0.999536712157815 35382 chr7 100210447 100210447 1 + G A SKCM 100210431 + 100210411 100210451 41 CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGG CTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTAGTGG < 41bp 1 0.477821422284051 1 0.557996034622192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210431 chr7:100210447 synonymous SNV . 0 37 hm5C_associated_SNPs_35706 0 0 1 0 1 Cytosol 1 0.500231643925067 0.884007930755616 0.999536712149866 hm5C_site_35382 DeepMRMD:0.884007930755616;iRNA_m5C:0.999536712149866 35383 chr7 100210447 100210447 1 + G A SKCM 100210432 + 100210412 100210452 41 TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGG TGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTAGTGGG < 41bp 1 0.570164735093177 1 0.78409469127655 experiment 0.859670529813645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210432 chr7:100210447 synonymous SNV . 0 36 hm5C_associated_SNPs_35707 0 0 1 0 1 Cytosol 1 0.500231643921092 0.4318106174469 0.999536712157815 hm5C_site_35383 DeepMRMD:0.4318106174469;iRNA_m5C:0.999536712157815 35384 chr7 100210447 100210447 1 + G A SKCM 100210460 + 100210440 100210480 41 AGGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG AGGAGCTAGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG < 41bp 1 0.282708608468482 1 0.177844136953354 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210460 chr7:100210447 synonymous SNV . 0 8 hm5C_associated_SNPs_35708 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35384 DeepMRMD:1;iRNA_m5C:0.999536712157815 35385 chr7 100210447 100210447 1 + G A SKCM 100210461 + 100210441 100210481 41 GGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG GGAGCTAGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG < 41bp 1 0.485840321108922 1 0.0942795872688293 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210461 chr7:100210447 synonymous SNV . 0 7 hm5C_associated_SNPs_35709 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_35385 DeepMRMD:1;iRNA_m5C:0.999536712157815 35386 chr7 100210447 100210447 1 + G A SKCM 100210462 + 100210442 100210482 41 GAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG GAGCTAGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG < 41bp 1 0.413140003274783 1 0.423829525709152 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210462 chr7:100210447 synonymous SNV . 0 6 hm5C_associated_SNPs_35710 0 0 1 0 1 Cytosol 1 0.500231643904216 1 0.999536712191567 hm5C_site_35386 DeepMRMD:1;iRNA_m5C:0.999536712191567 35387 chr7 100210447 100210447 1 + G A SKCM 100210463 + 100210443 100210483 41 AGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGGC AGCTAGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGGC < 41bp 1 0.681004156935813 1 0.49571880698204 experiment 0.637991686128375 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210463 chr7:100210447 synonymous SNV . 0 5 hm5C_associated_SNPs_35711 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35387 DeepMRMD:1;iRNA_m5C:0.999536712157815 35388 chr1 228451887 228451887 1 + C T SKCM 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGCGGGGACCAGTGCTACGCTGAGCTGCGA < 41bp 1 0.124900841514316 1 0.763401508331299 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451887 synonymous SNV . 0 27 hm5C_associated_SNPs_35712 0 0 0 0 1 Ribosome 1 0.500228529284503 0.473196983337402 0.999542941430994 hm5C_site_35388 DeepMRMD:0.473196983337402;iRNA_m5C:0.999542941430994 35389 chr11 108205756 108205756 1 + C T SKCM 108205739 + 108205719 108205759 41 AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTCGCT AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTTGCT < 41bp 1 0.021401357729521 1 0.057466983795166 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108205739 chr11:108205756 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_35713 3 0 1 0 2 Nucleus 1 0.500231643949792 1 0.999536712100417 hm5C_site_35389 DeepMRMD:1;iRNA_m5C:0.999536712100417 not specified not specified 35390 chr8 17406287 17406287 1 + G A SKCM 17406301 + 17406281 17406321 41 GTTTGTGAAAGGAAATGTGGCAAACTGGAAGATTAGTGAAG GTTTGTAAAAGGAAATGTGGCAAACTGGAAGATTAGTGAAG < 41bp 1 0.200764804275956 1 0.125482022762299 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17406301 chr8:17406287 synonymous SNV . 0 7 hm5C_associated_SNPs_35714 0 0 1 0 1 Ribosome 1 0.500231643921052 1 0.999536712157896 hm5C_site_35390 DeepMRMD:1;iRNA_m5C:0.999536712157896 35391 chr19 13010515 13010515 1 + C T SKCM 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTTGTTCAGATGTGTTCCTTAAAAAGA < 41bp 1 0.426299906873722 1 0.401756882667542 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010515 synonymous SNV . 0 17 hm5C_associated_SNPs_35715 0 0 1 1 1 Ribosome 1 0.500231646363592 1 0.999536707272815 hm5C_site_35391 DeepMRMD:1;iRNA_m5C:0.999536707272815 35392 chr5 147498055 147498055 1 + G A SKCM 147498044 + 147498024 147498064 41 CAAATGAAAAATGGAAGACTCAGCTGTACTCGGGAGAGTGA CAAATGAAAAATGGAAGACTCAGCTGTACTCAGGAGAGTGA < 41bp 1 0.402715299417649 1 0.330400109291077 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498044 chr5:147498055 nonsynonymous SNV 0.993 2 32 hm5C_associated_SNPs_35716 0 0 0 0 2 Endoplasmic reticulum 1 0.500231742021357 1 0.999536515957286 hm5C_site_35392 DeepMRMD:1;iRNA_m5C:0.999536515957286 35393 chr10 105172965 105172965 1 + C T SKCM 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTCCTACAGCCTGGACGCCCACTCACTCGACTCTCTTGCC < 41bp 1 0.103664420961125 1 0.0678515434265137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172965 synonymous SNV . 0 28 hm5C_associated_SNPs_35718 0 0 1 0 1 Nucleus 1 0.500298536605644 1 0.999402926788711 hm5C_site_35393 DeepMRMD:1;iRNA_m5C:0.999402926788711 35394 chr1 90473056 90473056 1 + C T SKCM 90473036 + 90473016 90473056 41 GGTGGTCGATTTGAGAGCTCCTACCGGAATAGCCTTGACTC GGTGGTCGATTTGAGAGCTCCTACCGGAATAGCCTTGACTT < 41bp 1 0.575258361638433 1 0.121148109436035 experiment 0.849483276723133 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90473036 chr1:90473056 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_35719 0 0 1 0 0 Cytosol 1 0.500231643914824 1 0.999536712170351 hm5C_site_35394 DeepMRMD:1;iRNA_m5C:0.999536712170351 35395 chr2 27257076 27257076 1 + C T SKCM 27257075 + 27257055 27257095 41 AGCCAAAGAAGGTGGCAACTCCTCCCAACCAAAACCAGAAG AGCCAAAGAAGGTGGCAACTCTTCCCAACCAAAACCAGAAG < 41bp 1 0.264547108039882 1 0.53518158197403 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27257075 chr2:27257076 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_35720 0 0 1 0 1 Ribosome 1 0.500231643921092 0.92963683605194 0.999536712157815 hm5C_site_35395 DeepMRMD:0.92963683605194;iRNA_m5C:0.999536712157815 35396 chr19 10793360 10793360 1 + C T SKCM 10793361 + 10793341 10793381 41 CACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAGG CACCCCTAGTGCGGCCTTTTCCTCAGATGCCACTGCCGAGG < 41bp 1 0.592460326234451 1 0.236611098051071 experiment 0.815079347531098 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793361 chr19:10793360 nonsynonymous SNV 0.589 0 20 hm5C_associated_SNPs_35721 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35396 DeepMRMD:1;iRNA_m5C:0.999536712157815 35397 chr5 5464624 5464624 1 + C A SKCM 5464638 + 5464618 5464658 41 CACTTCCTGTGCCTGGCCGACTCCCACCCTGTGCATCTGGC CACTTCATGTGCCTGGCCGACTCCCACCCTGTGCATCTGGC < 41bp 1 0.166223653299148 1 0.175816923379898 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ICE1 ENSG00000164151 CDS Human protein_coding chr5:5464638 chr5:5464624 nonsynonymous SNV 0.992 3 7 hm5C_associated_SNPs_35722 0 0 1 0 0 Nucleus 1 0.500231643921053 1 0.999536712157895 hm5C_site_35397 DeepMRMD:1;iRNA_m5C:0.999536712157895 35398 chr1 112999463 112999463 1 + C T SKCM 112999446 + 112999426 112999466 41 TTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTA TTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATTGTA < 41bp 1 0.125913774155137 1 0.0795544981956482 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999446 chr1:112999463 nonsynonymous SNV 0.981 3 38 hm5C_associated_SNPs_35723 0 0 0 0 0 Ribosome 1 0.500231641137581 1 0.999536717724838 hm5C_site_35398 DeepMRMD:1;iRNA_m5C:0.999536717724838 35399 chr1 112999463 112999463 1 + C T SKCM 112999447 + 112999427 112999467 41 TGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTAC TGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATTGTAC < 41bp 1 0.311865936295558 1 0.139913380146027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999447 chr1:112999463 nonsynonymous SNV 0.981 3 37 hm5C_associated_SNPs_35724 0 0 0 0 0 Ribosome 1 0.500231646866448 1 0.999536706267103 hm5C_site_35399 DeepMRMD:1;iRNA_m5C:0.999536706267103 35400 chr1 112999463 112999463 1 + C T SKCM 112999452 + 112999432 112999472 41 TCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGT TCATCAGCTAGCAGCCCTGGCTACCAGTCATTGTACCAAGT < 41bp 1 0.167761939653595 1 0.0254291296005249 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999452 chr1:112999463 nonsynonymous SNV 0.981 3 32 hm5C_associated_SNPs_35725 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35400 DeepMRMD:1;iRNA_m5C:0.999536712157815 35401 chr1 112999463 112999463 1 + C T SKCM 112999455 + 112999435 112999475 41 TCAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGG TCAGCTAGCAGCCCTGGCTACCAGTCATTGTACCAAGTAGG < 41bp 1 0.13942657051434 1 0.143242746591568 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999455 chr1:112999463 nonsynonymous SNV 0.981 3 29 hm5C_associated_SNPs_35726 0 0 0 0 0 Ribosome 1 0.500231618429621 1 0.999536763140759 hm5C_site_35401 DeepMRMD:1;iRNA_m5C:0.999536763140759 35402 chr1 112999463 112999463 1 + C T SKCM 112999456 + 112999436 112999476 41 CAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGG CAGCTAGCAGCCCTGGCTACCAGTCATTGTACCAAGTAGGG < 41bp 1 0.150080015669984 1 0.331962585449219 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999456 chr1:112999463 nonsynonymous SNV 0.981 3 28 hm5C_associated_SNPs_35727 0 0 0 0 0 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_35402 DeepMRMD:1;iRNA_m5C:0.999536712157812 35403 chr1 112999463 112999463 1 + C T SKCM 112999460 + 112999440 112999480 41 TAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGGATCA TAGCAGCCCTGGCTACCAGTCATTGTACCAAGTAGGGATCA < 41bp 1 0.223697606982808 1 0.0437112748622894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999460 chr1:112999463 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_35728 0 0 0 0 0 Ribosome 1 0.500231643907844 1 0.999536712184311 hm5C_site_35403 DeepMRMD:1;iRNA_m5C:0.999536712184311 35404 chr1 112999463 112999463 1 + C T SKCM 112999467 + 112999447 112999487 41 CCTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACG CCTGGCTACCAGTCATTGTACCAAGTAGGGATCAACCAACG < 41bp 1 0.330371874773212 1 0.555783331394196 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999467 chr1:112999463 nonsynonymous SNV 0.981 3 17 hm5C_associated_SNPs_35729 0 0 0 0 0 Ribosome 1 0.500231643921092 0.888433337211608 0.999536712157815 hm5C_site_35404 DeepMRMD:0.888433337211608;iRNA_m5C:0.999536712157815 35405 chr1 112999463 112999463 1 + C T SKCM 112999468 + 112999448 112999488 41 CTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACGG CTGGCTACCAGTCATTGTACCAAGTAGGGATCAACCAACGG < 41bp 1 0.432215788772208 1 0.134954780340195 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999468 chr1:112999463 nonsynonymous SNV 0.981 3 16 hm5C_associated_SNPs_35730 0 0 0 0 0 Ribosome 1 0.500231641027601 1 0.999536717944798 hm5C_site_35405 DeepMRMD:1;iRNA_m5C:0.999536717944798 35406 chr1 44069433 44069433 1 + C T SKCM 44069418 + 44069398 44069438 41 CGGGCCGACGAGGCGCGGCCCAACACCATAGATTTCGGCAA CGGGCCGACGAGGCGCGGCCCAACACCATAGATTTTGGCAA < 41bp 1 0.359351941732057 1 0.0652247667312622 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44069418 chr1:44069433 synonymous SNV . 0 36 hm5C_associated_SNPs_35733 0 0 1 0 0 Ribosome 1 0.50023397565893 1 0.999532048682139 hm5C_site_35406 DeepMRMD:1;iRNA_m5C:0.999532048682139 35407 chr3 11301462 11301462 1 + G A SKCM 11301466 + 11301446 11301486 41 AGAGAACCCCAAGGGGGATGCCAAGAAACCAGGGAAGGAGT AGAGAACCCCAAGGGGAATGCCAAGAAACCAGGGAAGGAGT < 41bp 1 0.255873106107724 1 0.595960378646851 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HRH1 ENSG00000196639 CDS Human protein_coding chr3:11301466 chr3:11301462 nonsynonymous SNV 0.007 0 17 hm5C_associated_SNPs_35734 0 0 0 0 0 nucleus 1 0.500231643921094 0.808079242706298 0.999536712157812 hm5C_site_35407 DeepMRMD:0.808079242706298;iRNA_m5C:0.999536712157812 35408 chr1 104115858 104115858 1 + C T SKCM 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATTGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA < 41bp 1 0.234048365430073 1 0.0725966095924377 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115858 synonymous SNV . 0 4 hm5C_associated_SNPs_35735 0 0 0 0 1 exosome 1 0.500231643921459 1 0.999536712157081 hm5C_site_35408 DeepMRMD:1;iRNA_m5C:0.999536712157081 35409 chr10 115644101 115644101 1 + C T SKCM 115644100 + 115644080 115644120 41 GAGCAAAAGGAGAACAACAACCCATTAGTTCCCCTTGGGAT GAGCAAAAGGAGAACAACAACTCATTAGTTCCCCTTGGGAT < 41bp 1 0.494833329270593 1 0.326154232025146 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115644100 chr10:115644101 nonsynonymous SNV 0.862 3 22 hm5C_associated_SNPs_35736 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_35409 DeepMRMD:1;iRNA_m5C:0.999536712157815 35410 chr16 70562803 70562803 1 + C T SKCM 70562823 + 70562803 70562843 41 CCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC TCCGTGGGAAGATCTTGGAGCTGCTTCGCCCAGACCCCAAC < 41bp 1 0.306111700317482 1 0.108657568693161 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70562823 chr16:70562803 nonsynonymous SNV 0.997 2 1 hm5C_associated_SNPs_35737 0 0 1 0 1 Cytosol 1 0.500231644038649 1 0.999536711922702 hm5C_site_35410 DeepMRMD:1;iRNA_m5C:0.999536711922702 35411 chr19 12924244 12924244 1 + C T SKCM 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCCCGTCCCCGTTCTTCCCACCGATATTTTCTGGAACG < 41bp 1 0.160812308187658 1 0.0845357775688171 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924244 synonymous SNV . 0 33 hm5C_associated_SNPs_35738 0 0 1 0 0 Ribosome 1 0.500231643921085 1 0.99953671215783 hm5C_site_35411 DeepMRMD:1;iRNA_m5C:0.99953671215783 35412 chr19 12924244 12924244 1 + C T SKCM 12924253 + 12924233 12924273 41 CACCGATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAG CACCGATATTTTCTGGAACGCGGCCTGGAGTCAGCAACCAG < 41bp 1 0.561329536460125 1 0.242447227239609 experiment 0.87734092707975 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924253 chr19:12924244 synonymous SNV . 0 12 hm5C_associated_SNPs_35739 0 0 1 0 0 Ribosome 1 0.500231643921108 1 0.999536712157784 hm5C_site_35412 DeepMRMD:1;iRNA_m5C:0.999536712157784 35413 chr1 156756594 156756594 1 + C T SKCM 156756587 + 156756567 156756607 41 TCTTGCCCCTGTTGTGGGCACCACAACCACCACTCCGTCGC TCTTGCCCCTGTTGTGGGCACCACAACTACCACTCCGTCGC < 41bp 1 0.476762319737421 1 0.0929289162158966 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756587 chr1:156756594 synonymous SNV . 0 28 hm5C_associated_SNPs_35740 0 0 1 0 0 Ribosome 1 0.500223919134943 1 0.999552161730114 hm5C_site_35413 DeepMRMD:1;iRNA_m5C:0.999552161730114 35414 chr1 156756594 156756594 1 + C T SKCM 156756593 + 156756573 156756613 41 CCCTGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTG CCCTGTTGTGGGCACCACAACTACCACTCCGTCGCCCTCTG < 41bp 1 0.406860600183305 1 0.0841791331768036 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756593 chr1:156756594 synonymous SNV . 0 22 hm5C_associated_SNPs_35741 0 0 1 0 0 Ribosome 1 0.500231643415371 1 0.999536713169258 hm5C_site_35414 DeepMRMD:1;iRNA_m5C:0.999536713169258 35415 chr1 156756594 156756594 1 + C T SKCM 156756596 + 156756576 156756616 41 TGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTGCTA TGTTGTGGGCACCACAACTACCACTCCGTCGCCCTCTGCTA < 41bp 1 0.227477929540242 1 0.0995873510837555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756596 chr1:156756594 synonymous SNV . 0 19 hm5C_associated_SNPs_35742 0 0 1 0 0 Ribosome 1 0.500231643921128 1 0.999536712157745 hm5C_site_35415 DeepMRMD:1;iRNA_m5C:0.999536712157745 35416 chr3 47040859 47040859 1 + C T SKCM 47040844 + 47040824 47040864 41 AGAATGAGCGGCTACCTGAGCGGAGCCGCCAGCGCCTCCGG AGAATGAGCGGCTACCTGAGCGGAGCCGCCAGCGCTTCCGG < 41bp 1 0.519446277882381 1 0.879778146743774 experiment 0.961107444235238 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47040844 chr3:47040859 nonsynonymous SNV 0.444 1 36 hm5C_associated_SNPs_35743 0 0 1 0 1 Nucleus 1 0.500231643922795 0.240443706512452 0.999536712154409 hm5C_site_35416 DeepMRMD:0.240443706512452;iRNA_m5C:0.999536712154409 35417 chr20 48568669 48568669 1 + C T SKCM 48568680 + 48568660 48568700 41 CTCCATCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCT CTCCATCATTGACCAGTGAGCAGAGTCCGTGCTTGCTATCT < 41bp 1 0.663102196898554 1 0.691442608833313 experiment 0.673795606202892 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF114 ENSG00000124226 CDS Human protein_coding chr20:48568680 chr20:48568669 synonymous SNV . 0 10 hm5C_associated_SNPs_35744 0 0 1 1 1 Ribosome 1 0.500231643921145 0.617114782333374 0.999536712157711 hm5C_site_35417 DeepMRMD:0.617114782333374;iRNA_m5C:0.999536712157711 35418 chr20 45801390 45801390 1 + C T SKCM 45801382 + 45801362 45801402 41 AACTTCTCCGCTGACGGCTTCCACAGTTCGGCCCCAGGAGC AACTTCTCCGCTGACGGCTTCCACAGTTTGGCCCCAGGAGC < 41bp 1 0.311602519342878 1 0.347661018371582 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801382 chr20:45801390 nonsynonymous SNV 0.362 3 29 hm5C_associated_SNPs_35746 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35418 DeepMRMD:1;iRNA_m5C:0.999536712157815 35419 chr6 3850774 3850774 1 + C T SKCM 3850769 + 3850749 3850789 41 TCATGTTCATCAAGGAGGACCTCATCCTGCCGCACTACCAC TCATGTTCATCAAGGAGGACCTCATTCTGCCGCACTACCAC < 41bp 1 0.347343158149678 1 0.178130835294724 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM50B ENSG00000145945 CDS Human protein_coding chr6:3850769 chr6:3850774 synonymous SNV . 0 26 hm5C_associated_SNPs_35747 0 0 0 0 0 exosome 1 0.500231646101769 1 0.999536707796461 hm5C_site_35419 DeepMRMD:1;iRNA_m5C:0.999536707796461 35420 chr2 46803734 46803734 1 + G A SKCM 46803731 + 46803711 46803751 41 AGATGACCCCAAAACTTTAGCAAGACTGAATGATATGAAAG AGATGACCCCAAAACTTTAGCAAAACTGAATGATATGAAAG < 41bp 1 0.45970306589225 1 0.462357610464096 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOQ ENSG00000119729 CDS Human protein_coding chr2:46803731 chr2:46803734 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_35748 0 0 0 0 2 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_35420 DeepMRMD:1;iRNA_m5C:0.999536712157815 35421 chrX 48369840 48369840 1 + C T SKCM 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTTC < 41bp 1 0.0853707223658385 1 0.0621182024478912 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369840 nonsynonymous SNV . 0 40 hm5C_associated_SNPs_35749 0 0 0 0 2 nucleolus 1 0.500231643921093 1 0.999536712157814 hm5C_site_35421 DeepMRMD:1;iRNA_m5C:0.999536712157814 35422 chr22 46681159 46681159 1 + A C SKCM 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGCC < 41bp 1 0.101608177750926 1 0.276779234409332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681159 nonsynonymous SNV 0.023 2 40 hm5C_associated_SNPs_35750 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_35422 DeepMRMD:1;iRNA_m5C:0.999536712157815 35423 chr19 5041226 5041226 1 + C T SKCM 5041241 + 5041221 5041261 41 CCGATCTACGGGGCTGACATCAGCGGCTCTTTGTATGATGA CCGATTTACGGGGCTGACATCAGCGGCTCTTTGTATGATGA < 41bp 1 0.469289732022164 1 0.826545774936676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5041241 chr19:5041226 synonymous SNV . 0 6 hm5C_associated_SNPs_35751 0 0 1 0 2 Cytosol 1 0.500231643921812 0.346908450126648 0.999536712156375 hm5C_site_35423 DeepMRMD:0.346908450126648;iRNA_m5C:0.999536712156375 35424 chr21 42769569 42769569 1 + T C SKCM 42769560 + 42769540 42769580 41 AGTTCTCCTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG AGTTCTCCTGGAGGAGGGGTCAGCCACGGCTCCCCGACTGG < 41bp 1 0.340707020298747 1 0.450921952724457 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MX2 ENSG00000183486 CDS Human protein_coding chr21:42769560 chr21:42769569 nonsynonymous SNV 0.866 4 30 hm5C_associated_SNPs_35752 0 0 0 0 1 exosome 1 0.500231644122144 1 0.999536711755712 hm5C_site_35424 DeepMRMD:1;iRNA_m5C:0.999536711755712 35425 chr19 14562718 14562718 1 + G A SKCM 14562705 + 14562685 14562725 41 ACCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG ACCATCCCGTGGAACCCTACCCCCTCAATGGGGAGACCTGG < 41bp 1 0.117350021018983 1 0.0575518012046814 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562705 chr19:14562718 nonsynonymous SNV 0.054 0 34 hm5C_associated_SNPs_35753 0 0 1 0 1 Ribosome 1 0.500231643921095 1 0.999536712157811 hm5C_site_35425 DeepMRMD:1;iRNA_m5C:0.999536712157811 35426 chr19 14562718 14562718 1 + G A SKCM 14562706 + 14562686 14562726 41 CCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG CCATCCCGTGGAACCCTACCCCCTCAATGGGGAGACCTGGG < 41bp 1 0.0505227857179753 1 0.251951158046722 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562706 chr19:14562718 nonsynonymous SNV 0.054 0 33 hm5C_associated_SNPs_35754 0 0 1 0 1 Ribosome 1 0.500231643921217 1 0.999536712157566 hm5C_site_35426 DeepMRMD:1;iRNA_m5C:0.999536712157566 35427 chr11 48164473 48164473 1 + C T SKCM 48164480 + 48164460 48164500 41 TTTTGTTTTAGATCCCCCTCCTCCAGATGGATCCCCTAATA TTTTGTTTTAGATTCCCCTCCTCCAGATGGATCCCCTAATA < 41bp 1 0.437829251923814 1 0.79524552822113 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48164480 chr11:48164473 nonsynonymous SNV 0.845 3 14 hm5C_associated_SNPs_35756 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643923018 0.40950894355774 0.999536712153963 hm5C_site_35427 DeepMRMD:0.40950894355774;iRNA_m5C:0.999536712153963 35428 chr7 129946647 129946647 1 + G A SKCM 129946651 + 129946631 129946671 41 TATCTGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG TATCTGATTACCAGAGAGATCCAGCTATCACCTCCATCTTG < 41bp 1 0.238645977561876 1 0.178705245256424 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946651 chr7:129946647 synonymous SNV . 0 17 hm5C_associated_SNPs_35758 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35428 DeepMRMD:1;iRNA_m5C:0.999536712157815 35429 chr8 27516404 27516404 1 + G T SKCM 27516409 + 27516389 27516429 41 CCACGGGATCCAGCGGAAGACAGACGAGGAGACCCTGACCC CCACGGGATCCAGCGTAAGACAGACGAGGAGACCCTGACCC < 41bp 1 0.597561879805087 1 0.630299627780914 experiment 0.804876240389827 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27516409 chr8:27516404 synonymous SNV . 0 16 hm5C_associated_SNPs_35759 0 0 0 0 0 Cytosol 1 0.500231643920865 0.739400744438172 0.999536712158269 hm5C_site_35429 DeepMRMD:0.739400744438172;iRNA_m5C:0.999536712158269 35430 chr7 129946646 129946646 1 + G A SKCM 129946651 + 129946631 129946671 41 TATCTGATTACCAGAGGGATCCAGCTATCACCTCCATCTTG TATCTGATTACCAGAAGGATCCAGCTATCACCTCCATCTTG < 41bp 1 0.195130973045136 1 0.195187211036682 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946651 chr7:129946646 nonsynonymous SNV 0.992 0 16 hm5C_associated_SNPs_35760 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921071 1 0.999536712157859 hm5C_site_35430 DeepMRMD:1;iRNA_m5C:0.999536712157859 35431 chr19 11145668 11145668 1 + C T SKCM 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGGAGGAGGACGAGCTCTCCTCGTGGATCATCAAGGACG < 41bp 1 0.260598562043196 1 0.160362988710403 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145668 nonsynonymous SNV 0.260 5 20 hm5C_associated_SNPs_35762 0 0 1 0 1 Nucleus 1 0.500231881419924 1 0.999536237160152 hm5C_site_35431 DeepMRMD:1;iRNA_m5C:0.999536237160152 35432 chr19 11145668 11145668 1 + C T SKCM 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GGAGGAGGACGAGCTCTCCTCGTGGATCATCAAGGACGACG < 41bp 1 0.645792982263466 1 0.643541753292084 experiment 0.708414035473068 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145668 nonsynonymous SNV 0.260 5 17 hm5C_associated_SNPs_35763 0 0 1 0 1 Nucleus 1 0.500231643737617 0.712916493415832 0.999536712524765 hm5C_site_35432 DeepMRMD:0.712916493415832;iRNA_m5C:0.999536712524765 35433 chr19 50906828 50906828 1 + C T SKCM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTACTTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.083334911327076 1 0.206457853317261 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906828 nonsynonymous SNV 0.976 4 6 hm5C_associated_SNPs_35764 0 0 1 1 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35433 DeepMRMD:1;iRNA_m5C:0.999536712157815 35434 chr12 57619023 57619023 1 + C T SKCM 57619032 + 57619012 57619052 41 AGTGTGTATTTCCGCCACAACTCGTCCAGCCTGGGCAACCT AGTGTGTATTTTCGCCACAACTCGTCCAGCCTGGGCAACCT < 41bp 1 0.547653882843036 1 0.355785846710205 experiment 0.904692234313927 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619032 chr12:57619023 synonymous SNV . 0 12 hm5C_associated_SNPs_35765 0 0 1 0 0 exosome 1 0.500231571483161 1 0.999536857033679 hm5C_site_35434 DeepMRMD:1;iRNA_m5C:0.999536857033679 35435 chr1 3342247 3342247 1 + C T SKCM 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTGCAATCGCTGCTTCGGGCAGCAGACCAA < 41bp 1 0.425054968963701 1 0.295001000165939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342247 synonymous SNV . 0 18 hm5C_associated_SNPs_35766 0 0 0 0 1 Nucleus 1 0.500231704045611 1 0.999536591908778 hm5C_site_35435 DeepMRMD:1;iRNA_m5C:0.999536591908778 35436 chr19 50906827 50906827 1 + C T SKCM 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CGTATCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0756452236639736 1 0.193235009908676 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906827 synonymous SNV . 0 5 hm5C_associated_SNPs_35767 0 0 1 1 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35436 DeepMRMD:1;iRNA_m5C:0.999536712157815 35437 chr1 154960749 154960749 1 + C T SKCM 154960745 + 154960725 154960765 41 GTCCTCACAGCAGGGGGCATCGGCCCCACTCATGATGATGT GTCCTCACAGCAGGGGGCATCGGCTCCACTCATGATGATGT < 41bp 1 0.63047732746253 1 0.711179375648499 experiment 0.739045345074941 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154960745 chr1:154960749 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_35768 0 0 1 0 0 Cytosol 1 0.50023155859728 0.577641248703002 0.999536882805439 hm5C_site_35437 DeepMRMD:0.577641248703002;iRNA_m5C:0.999536882805439 35438 chr4 126372102 126372102 1 + G A SKCM 126372100 + 126372080 126372120 41 CTATTTTGAAATCTCAGAAGCAGCTCCTAAAGGTACTATTG CTATTTTGAAATCTCAGAAGCAACTCCTAAAGGTACTATTG < 41bp 1 0.0389131174591817 1 0.165695309638977 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126372100 chr4:126372102 nonsynonymous SNV 0.822 3 23 hm5C_associated_SNPs_35769 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35438 DeepMRMD:1;iRNA_m5C:0.999536712157815 35439 chr12 1755151 1755151 1 + C T SKCM 1755170 + 1755150 1755190 41 CCCAGCCCACCCCGGAGGACCTGGTCTATGTGGACCCCAGC CTCAGCCCACCCCGGAGGACCTGGTCTATGTGGACCCCAGC < 41bp 1 0.625629667520046 1 0.234739303588867 experiment 0.748740664959908 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control WNT5B ENSG00000111186 CDS Human protein_coding chr12:1755170 chr12:1755151 synonymous SNV . 0 2 hm5C_associated_SNPs_35770 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643922099 1 0.999536712155802 hm5C_site_35439 DeepMRMD:1;iRNA_m5C:0.999536712155802 35440 chr6 159181735 159181735 1 + G A SKCM 159181716 + 159181696 159181736 41 CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGT CCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGAT < 41bp 1 0.608184646808245 1 0.215743631124496 experiment 0.783630706383511 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181716 chr6:159181735 nonsynonymous SNV 0.038 0 40 hm5C_associated_SNPs_35771 0 0 0 0 2 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_35440 DeepMRMD:1;iRNA_m5C:0.999536712157814 35441 chr20 49196259 49196259 1 + C T SKCM 49196243 + 49196223 49196263 41 CTTGCTGCTCTTTCAAGGATCAGTGGAAGGAGCTTTCCCAC CTTGCTGCTCTTTCAAGGATCAGTGGAAGGAGCTTTTCCAC < 41bp 1 0.561463627977916 1 0.644997179508209 experiment 0.877072744044169 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49196243 chr20:49196259 nonsynonymous SNV 0.993 4 37 hm5C_associated_SNPs_35772 0 0 1 0 1 Ribosome 1 0.500231643921092 0.710005640983582 0.999536712157815 hm5C_site_35441 DeepMRMD:0.710005640983582;iRNA_m5C:0.999536712157815 35442 chr4 79512753 79512753 1 + G A SKCM 79512760 + 79512740 79512780 41 CTGGTGACTTCCGGAAAGCTCTGTTGACTTTGGCAGATGTA CTGGTGACTTCCGAAAAGCTCTGTTGACTTTGGCAGATGTA < 41bp 1 0.220385798782702 1 0.0816450119018555 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79512760 chr4:79512753 synonymous SNV . 0 14 hm5C_associated_SNPs_35773 0 0 0 0 2 cytosol 1 0.500231643921272 1 0.999536712157455 hm5C_site_35442 DeepMRMD:1;iRNA_m5C:0.999536712157455 35443 chr2 27280274 27280274 1 + C T SKCM 27280287 + 27280267 27280307 41 GGCTTTCCCCTCCAGATACACTGTGGAACTATTTGAGCAGG GGCTTTCTCCTCCAGATACACTGTGGAACTATTTGAGCAGG < 41bp 1 0.598669227128437 1 0.492403745651245 experiment 0.802661545743126 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280287 chr2:27280274 nonsynonymous SNV 0.998 4 8 hm5C_associated_SNPs_35774 0 0 1 1 1 Cytosol 1 0.500231643892439 1 0.999536712215122 hm5C_site_35443 DeepMRMD:1;iRNA_m5C:0.999536712215122 35444 chr1 156756596 156756596 1 + C T SKCM 156756587 + 156756567 156756607 41 TCTTGCCCCTGTTGTGGGCACCACAACCACCACTCCGTCGC TCTTGCCCCTGTTGTGGGCACCACAACCATCACTCCGTCGC < 41bp 1 0.437907272699264 1 0.0505099892616272 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756587 chr1:156756596 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_35775 0 0 1 0 0 Ribosome 1 0.500231979782152 1 0.999536040435697 hm5C_site_35444 DeepMRMD:1;iRNA_m5C:0.999536040435697 35445 chr1 156756596 156756596 1 + C T SKCM 156756593 + 156756573 156756613 41 CCCTGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTG CCCTGTTGTGGGCACCACAACCATCACTCCGTCGCCCTCTG < 41bp 1 0.0845598599668207 1 0.184873253107071 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756593 chr1:156756596 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_35776 0 0 1 0 0 Ribosome 1 0.500231653498826 1 0.999536693002348 hm5C_site_35445 DeepMRMD:1;iRNA_m5C:0.999536693002348 35446 chr1 156756596 156756596 1 + C T SKCM 156756594 + 156756574 156756614 41 CCTGTTGTGGGCACCACAACCACCACTCCGTCGCCCTCTGC CCTGTTGTGGGCACCACAACCATCACTCCGTCGCCCTCTGC < 41bp 1 0.644005762973705 1 0.474193423986435 experiment 0.711988474052589 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756594 chr1:156756596 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_35777 0 0 1 0 0 Ribosome 1 0.500231053438448 1 0.999537893123104 hm5C_site_35446 DeepMRMD:1;iRNA_m5C:0.999537893123104 35447 chr15 64424071 64424071 1 + C T SKCM 64424067 + 64424047 64424087 41 GCTGAGCTCCTGAGTGACTACATTCGCCTCCTGGCCATAGT GCTGAGCTCCTGAGTGACTACATTTGCCTCCTGGCCATAGT < 41bp 1 0.124588769954819 1 0.077488511800766 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64424067 chr15:64424071 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_35778 0 0 1 0 1 Ribosome 1 0.5002316438278 1 0.999536712344401 hm5C_site_35447 DeepMRMD:1;iRNA_m5C:0.999536712344401 35448 chr17 48768473 48768473 1 + G A SKCM 48768463 + 48768443 48768483 41 TTTTGACTAGGGTCCTGGTCCTGGACAAAGGAGTAGTAGCT TTTTGACTAGGGTCCTGGTCCTGGACAAAGAAGTAGTAGCT < 41bp 1 0.597657973290831 1 0.615311443805695 experiment 0.804684053418339 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48768463 chr17:48768473 nonsynonymous SNV 0.684 5 31 hm5C_associated_SNPs_35779 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.76937711238861 0.999536712157815 hm5C_site_35448 DeepMRMD:0.76937711238861;iRNA_m5C:0.999536712157815 35449 chr2 11922483 11922483 1 + C T SKCM 11922463 + 11922443 11922483 41 GCCAACTCTGGTCGGTGGGGCACTTTTGGACCAGAACAAGC GCCAACTCTGGTCGGTGGGGCACTTTTGGACCAGAACAAGT < 41bp 1 0.0943482883226817 1 0.212099581956863 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPIN1 ENSG00000134324 CDS Human protein_coding chr2:11922463 chr2:11922483 nonsynonymous SNV 0.001 0 41 hm5C_associated_SNPs_35780 0 0 0 0 0 Cytosol 1 0.500231643915507 1 0.999536712168986 hm5C_site_35449 DeepMRMD:1;iRNA_m5C:0.999536712168986 35450 chr2 11922483 11922483 1 + C T SKCM 11922465 + 11922445 11922485 41 CAACTCTGGTCGGTGGGGCACTTTTGGACCAGAACAAGCCT CAACTCTGGTCGGTGGGGCACTTTTGGACCAGAACAAGTCT < 41bp 1 0.0514645666274652 1 0.0924696624279022 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPIN1 ENSG00000134324 CDS Human protein_coding chr2:11922465 chr2:11922483 nonsynonymous SNV 0.001 0 39 hm5C_associated_SNPs_35781 0 0 0 0 0 Cytosol 1 0.500231628783015 1 0.99953674243397 hm5C_site_35450 DeepMRMD:1;iRNA_m5C:0.99953674243397 35451 chr5 154174820 154174820 1 + C T SKCM 154174837 + 154174817 154174857 41 ACCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCAC ACCTTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCAC < 41bp 1 0.336651511717221 1 0.638973832130432 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174837 chr5:154174820 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_35782 0 0 1 0 2 Cytosol 1 0.500231545027773 0.722052335739136 0.999536909944454 hm5C_site_35451 DeepMRMD:0.722052335739136;iRNA_m5C:0.999536909944454 35452 chr5 154174820 154174820 1 + C T SKCM 154174838 + 154174818 154174858 41 CCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCACT CCTTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCACT < 41bp 1 0.424446622974519 1 0.891297519207001 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174838 chr5:154174820 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_35783 0 0 1 0 2 Cytosol 1 0.500231643919688 0.217404961585998 0.999536712160624 hm5C_site_35452 DeepMRMD:0.217404961585998;iRNA_m5C:0.999536712160624 35453 chr19 55817700 55817700 1 + C T SKCM 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC GTCTTTCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC < 41bp 1 0.131128498669312 1 0.136308223009109 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817700 synonymous SNV . 0 6 hm5C_associated_SNPs_35784 0 0 0 0 1 chromatin 1 0.500231643921151 1 0.999536712157698 hm5C_site_35453 DeepMRMD:1;iRNA_m5C:0.999536712157698 35454 chr2 167108321 167108321 1 + C T SKCM 167108313 - 167108293 167108333 41 AGAAGAAGCAGAGGCTGAACCTATGAATTCCGATGAGCCAG AGAAGAAGCAGAAGCTGAACCTATGAATTCCGATGAGCCAG < 41bp 1 0.345800873876751 1 0.353359580039978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108313 chr2:167108321 synonymous SNV . 0 13 hm5C_associated_SNPs_35786 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643583364 1 0.999536712833272 hm5C_site_35454 DeepMRMD:1;iRNA_m5C:0.999536712833272 35455 chr20 45801394 45801394 1 + C T SKCM 45801382 + 45801362 45801402 41 AACTTCTCCGCTGACGGCTTCCACAGTTCGGCCCCAGGAGC AACTTCTCCGCTGACGGCTTCCACAGTTCGGCTCCAGGAGC < 41bp 1 0.320979848172791 1 0.247623533010483 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801382 chr20:45801394 synonymous SNV . 0 33 hm5C_associated_SNPs_35787 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921187 1 0.999536712157626 hm5C_site_35455 DeepMRMD:1;iRNA_m5C:0.999536712157626 35456 chr14 24567503 24567503 1 + C T SKCM 24567497 + 24567477 24567517 41 CTTCTCAGCGGGACACGGTACAACTCCCGCCTGGTGGGGCC CTTCTCAGCGGGACACGGTACAACTCTCGCCTGGTGGGGCC < 41bp 1 0.645565266926595 1 0.0439099669456482 experiment 0.70886946614681 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCK2 ENSG00000100889 CDS Human protein_coding chr14:24567497 chr14:24567503 nonsynonymous SNV 0.423 1 27 hm5C_associated_SNPs_35788 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35456 DeepMRMD:1;iRNA_m5C:0.999536712157815 35457 chr17 48551159 48551159 1 + G A SKCM 48551147 + 48551127 48551167 41 AGGACTTCTTTCACACACACCCGAAGGTGCAGGAAGTGCAG AGGACTTCTTTCACACACACCCGAAGGTGCAGAAAGTGCAG < 41bp 1 0.401275807748198 1 0.281169652938843 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48551147 chr17:48551159 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_35789 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643576062 1 0.999536712847876 hm5C_site_35457 DeepMRMD:1;iRNA_m5C:0.999536712847876 35458 chr1 150957108 150957108 1 + G A SKCM 150957105 + 150957085 150957125 41 GGCCATTGAAATTCTTGCCACTCGAACCCCACCCCAGCTGC GGCCATTGAAATTCTTGCCACTCAAACCCCACCCCAGCTGC < 41bp 1 0.60311785356803 1 0.87690258026123 experiment 0.793764292863939 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150957105 chr1:150957108 nonsynonymous SNV 0.507 4 24 hm5C_associated_SNPs_35790 0 0 0 0 2 cytosol 1 0.500231643921107 0.24619483947754 0.999536712157787 hm5C_site_35458 DeepMRMD:0.24619483947754;iRNA_m5C:0.999536712157787 35459 chr16 19460898 19460898 1 + C T SKCM 19460903 + 19460883 19460923 41 TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGT TGAAAGTGGTCCTGTTCATGCTTATGGAAACCCACCATTGT < 41bp 1 0.14974518267197 1 0.062269926071167 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMC5 ENSG00000103534 CDS Human protein_coding chr16:19460903 chr16:19460898 synonymous SNV . 0 16 hm5C_associated_SNPs_35791 0 0 1 0 2 cytosol 1 0.500231643779306 1 0.999536712441388 hm5C_site_35459 DeepMRMD:1;iRNA_m5C:0.999536712441388 35460 chr7 40102466 40102466 1 + C T SKCM 40102465 + 40102445 40102485 41 TAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGA TAATTACTTTATGGTACCGTCTACCTGAACTGCTACTGGGA < 41bp 1 0.12286913123727 1 0.256635785102844 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:40102465 chr7:40102466 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_35792 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35460 DeepMRMD:1;iRNA_m5C:0.999536712157815 35461 chr5 176519753 176519753 1 + C T SKCM 176519758 + 176519738 176519778 41 ATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG ATTCCATCGGCCTCTTCTACCAGTCTGCCTGGCTCACGGTG < 41bp 1 0.328800991472659 1 0.346539735794067 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519758 chr5:176519753 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_35793 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643898307 1 0.999536712203386 hm5C_site_35461 DeepMRMD:1;iRNA_m5C:0.999536712203386 35462 chr2 11922484 11922484 1 + C T SKCM 11922465 + 11922445 11922485 41 CAACTCTGGTCGGTGGGGCACTTTTGGACCAGAACAAGCCT CAACTCTGGTCGGTGGGGCACTTTTGGACCAGAACAAGCTT < 41bp 1 0.0621476895213154 1 0.0612414181232452 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPIN1 ENSG00000134324 CDS Human protein_coding chr2:11922465 chr2:11922484 nonsynonymous SNV 0.022 1 40 hm5C_associated_SNPs_35794 0 0 0 0 0 Cytosol 1 0.500231644090359 1 0.999536711819281 hm5C_site_35462 DeepMRMD:1;iRNA_m5C:0.999536711819281 35463 chr5 167943887 167943887 1 + C T SKCM 167943878 + 167943858 167943898 41 CATAACCGGTTGAATGACTACATCTTCTCCTTTGACAAAAT CATAACCGGTTGAATGACTACATCTTCTCTTTTGACAAAAT < 41bp 1 0.158967113186986 1 0.0727981925010681 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943878 chr5:167943887 synonymous SNV . 0 30 hm5C_associated_SNPs_35795 0 0 1 0 1 Nucleus 1 0.500234246772567 1 0.999531506454866 hm5C_site_35463 DeepMRMD:1;iRNA_m5C:0.999531506454866 35464 chr5 167943886 167943886 1 + C T SKCM 167943878 + 167943858 167943898 41 CATAACCGGTTGAATGACTACATCTTCTCCTTTGACAAAAT CATAACCGGTTGAATGACTACATCTTCTTCTTTGACAAAAT < 41bp 1 0.180382461553353 1 0.0742190778255463 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943878 chr5:167943886 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_35796 0 0 1 0 1 Nucleus 1 0.500221096581232 1 0.999557806837537 hm5C_site_35464 DeepMRMD:1;iRNA_m5C:0.999557806837537 35465 chr16 57075434 57075434 1 + C T SKCM 57075442 + 57075422 57075462 41 AAGCACCTAGAGCAGCTCTGCAAGGCTCTGGGAGGAAGCTG AAGCACCTAGAGTAGCTCTGCAAGGCTCTGGGAGGAAGCTG < 41bp 1 0.49838917746959 1 0.468200415372849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57075442 chr16:57075434 stopgain 0.130 0 13 hm5C_associated_SNPs_35797 0 0 0 0 2 Ribosome 1 0.500231643913392 1 0.999536712173216 hm5C_site_35465 DeepMRMD:1;iRNA_m5C:0.999536712173216 35466 chr6 44218052 44218052 1 + A G SKCM 44218068 + 44218048 44218088 41 GGAAATTAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGA GGAAGTTAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGA < 41bp 1 0.484066856146706 1 0.6020427942276 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218068 chr6:44218052 nonsynonymous SNV 0.999 0 5 hm5C_associated_SNPs_35798 0 0 1 0 1 Nucleus 1 0.500231643921887 0.7959144115448 0.999536712156227 hm5C_site_35466 DeepMRMD:0.7959144115448;iRNA_m5C:0.999536712156227 35467 chr1 28600569 28600569 1 + C T SKCM 28600565 + 28600545 28600585 41 CCTCAGCTGACATCCTGGAGCCCTCTCCACACCCAGACATG CCTCAGCTGACATCCTGGAGCCCTTTCCACACCCAGACATG < 41bp 1 0.0345315224914385 1 0.0134443044662476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600565 chr1:28600569 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_35799 0 0 1 0 1 Ribosome 1 0.500231643903491 1 0.999536712193019 hm5C_site_35467 DeepMRMD:1;iRNA_m5C:0.999536712193019 35468 chr10 75542922 75542922 1 + C T SKCM 75542932 + 75542912 75542952 41 ACAGAGGTTTCCTAACAAACCTTACCTCAGCTGAAAATGGA ACAGAGGTTTTCTAACAAACCTTACCTCAGCTGAAAATGGA < 41bp 1 0.304368929965186 1 0.0479377806186676 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHCHD1 ENSG00000172586 CDS Human protein_coding chr10:75542932 chr10:75542922 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_35800 0 0 1 0 1 Ribosome 1 0.500231643399181 1 0.999536713201638 hm5C_site_35468 DeepMRMD:1;iRNA_m5C:0.999536713201638 35469 chr10 17276785 17276785 1 + C T SKCM 17276805 + 17276785 17276825 41 CTCACCTGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC TTCACCTGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC < 41bp 1 0.140617227849125 1 0.02639240026474 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276805 chr10:17276785 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_35801 0 0 1 0 2 Ribosome 1 0.500231644936465 1 0.999536710127069 hm5C_site_35469 DeepMRMD:1;iRNA_m5C:0.999536710127069 35470 chr16 57113043 57113043 1 + C T SKCM 57113028 + 57113008 57113048 41 CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATCAGGTA CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATTAGGTA < 41bp 1 0.0562125733262868 1 0.0617503225803375 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57113028 chr16:57113043 synonymous SNV . 0 36 hm5C_associated_SNPs_35802 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35470 DeepMRMD:1;iRNA_m5C:0.999536712157815 35471 chr22 24573553 24573553 1 + C A SKCM 24573545 + 24573525 24573565 41 AGTGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAG AGTGAGACTCAGCCCCTGAGCTCTCCCCAAACAGCTGCCAG < 41bp 1 0.0928286032590255 1 0.329304128885269 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573545 chr22:24573553 nonsynonymous SNV 0.006 0 29 hm5C_associated_SNPs_35803 0 0 1 0 1 Cytosol 1 0.500231643870434 1 0.999536712259133 hm5C_site_35471 DeepMRMD:1;iRNA_m5C:0.999536712259133 35472 chr22 24573553 24573553 1 + C A SKCM 24573547 + 24573527 24573567 41 TGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCT TGAGACTCAGCCCCTGAGCTCTCCCCAAACAGCTGCCAGCT < 41bp 1 0.145565554658435 1 0.170837581157684 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573547 chr22:24573553 nonsynonymous SNV 0.006 0 27 hm5C_associated_SNPs_35804 0 0 1 0 1 Cytosol 1 0.500231643925758 1 0.999536712148484 hm5C_site_35472 DeepMRMD:1;iRNA_m5C:0.999536712148484 35473 chr22 24573553 24573553 1 + C A SKCM 24573549 + 24573529 24573569 41 AGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCC AGACTCAGCCCCTGAGCTCTCCCCAAACAGCTGCCAGCTCC < 41bp 1 0.482193181140469 1 0.78583037853241 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573549 chr22:24573553 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_35805 0 0 1 0 1 Cytosol 1 0.500231643921092 0.42833924293518 0.999536712157815 hm5C_site_35473 DeepMRMD:0.42833924293518;iRNA_m5C:0.999536712157815 35474 chr22 24573553 24573553 1 + C A SKCM 24573550 + 24573530 24573570 41 GACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCA GACTCAGCCCCTGAGCTCTCCCCAAACAGCTGCCAGCTCCA < 41bp 1 0.155913881926276 1 0.25283545255661 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573550 chr22:24573553 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_35806 0 0 1 0 1 Cytosol 1 0.500231643921718 1 0.999536712156564 hm5C_site_35474 DeepMRMD:1;iRNA_m5C:0.999536712156564 35475 chr22 24573553 24573553 1 + C A SKCM 24573551 + 24573531 24573571 41 ACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCAA ACTCAGCCCCTGAGCTCTCCCCAAACAGCTGCCAGCTCCAA < 41bp 1 0.199451425178584 1 0.225923597812653 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573551 chr22:24573553 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_35807 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35475 DeepMRMD:1;iRNA_m5C:0.999536712157815 35476 chr2 160031622 160031622 1 + C T SKCM 160031614 + 160031594 160031634 41 AGCCCCAACTACAGAGCATGCTGAGCCTCCGATCCTGTGTG AGCCCCAACTACAGAGCATGCTGAGCCTTCGATCCTGTGTG < 41bp 1 0.505827476928549 1 0.303691953420639 experiment 0.988345046142902 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160031614 chr2:160031622 synonymous SNV . 0 29 hm5C_associated_SNPs_35808 0 0 0 0 1 Nucleus 1 0.500231644055161 1 0.999536711889679 hm5C_site_35476 DeepMRMD:1;iRNA_m5C:0.999536711889679 35477 chr1 16056393 16056393 1 + C T SKCM 16056373 + 16056353 16056393 41 AGCATCCTGACGGATGCCACCATGGAGAAGCTGGCACTGGC AGCATCCTGACGGATGCCACCATGGAGAAGCTGGCACTGGT < 41bp 1 0.37731843160711 1 0.428626507520676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056373 chr1:16056393 nonsynonymous SNV 0.999 2 41 hm5C_associated_SNPs_35809 0 0 1 0 1 chromatin 1 0.50023142275761 1 0.999537154484779 hm5C_site_35477 DeepMRMD:1;iRNA_m5C:0.999537154484779 35478 chr4 153896248 153896248 1 + C T SKCM 153896264 + 153896244 153896284 41 AAACCTCAGGCCTCGGGGGGCCAGGAGGAGGCCCCCAACCC AAACTTCAGGCCTCGGGGGGCCAGGAGGAGGCCCCCAACCC < 41bp 1 0.395918349711883 1 0.764682292938232 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896264 chr4:153896248 nonsynonymous SNV 0.604 0 5 hm5C_associated_SNPs_35810 0 0 0 0 0 Nucleus 1 0.500231643945242 0.470635414123536 0.999536712109517 hm5C_site_35478 DeepMRMD:0.470635414123536;iRNA_m5C:0.999536712109517 35479 chr19 10893729 10893729 1 + C T SKCM 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGAAGTTCTTCCTCTTCCACCCGGCCTA < 41bp 1 0.183291024434747 1 0.0450520515441895 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893729 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_35811 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35479 DeepMRMD:1;iRNA_m5C:0.999536712157815 35480 chr8 145065438 145065438 1 + C T SKCM 145065439 + 145065419 145065459 41 TCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGG TCTGGGGACAACTATCCTCTCCCCAACCCTGGATATCCGGG < 41bp 1 0.45757055760428 1 0.326483428478241 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065439 chr8:145065438 nonsynonymous SNV 0.866 1 20 hm5C_associated_SNPs_35812 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921118 1 0.999536712157764 hm5C_site_35480 DeepMRMD:1;iRNA_m5C:0.999536712157764 35481 chr11 48152026 48152026 1 + C T SKCM 48152020 + 48152000 48152040 41 TCTTTGCATAGCCCCTGTTCCAGTTTCTGACTTCCGAGTGA TCTTTGCATAGCCCCTGTTCCAGTTTTTGACTTCCGAGTGA < 41bp 1 0.158172166373811 1 0.14460813999176 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48152020 chr11:48152026 nonsynonymous SNV 0.032 2 27 hm5C_associated_SNPs_35813 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921778 1 0.999536712156445 hm5C_site_35481 DeepMRMD:1;iRNA_m5C:0.999536712156445 35482 chr1 163042242 163042242 1 + A G SKCM 163042250 + 163042230 163042270 41 TGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA TGATTCCTGTGAGCACAATTCTTCCCACAACAAGAAGGACA < 41bp 1 0.152546295833624 1 0.060931921005249 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RGS4 ENSG00000117152 CDS Human protein_coding chr1:163042250 chr1:163042242 synonymous SNV . 0 13 hm5C_associated_SNPs_35814 0 0 0 0 2 exosome 1 0.500214319583924 1 0.999571360832152 hm5C_site_35482 DeepMRMD:1;iRNA_m5C:0.999571360832152 35483 chr1 29618381 29618381 1 + G A SKCM 29618385 + 29618365 29618405 41 CAACCCCCCTCTCCAGGAAGCCGGTGAACATGACCAAGGCC CAACCCCCCTCTCCAGAAAGCCGGTGAACATGACCAAGGCC < 41bp 1 0.184426198021525 1 0.332224011421204 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPRU ENSG00000060656 CDS Human protein_coding chr1:29618385 chr1:29618381 synonymous SNV . 0 17 hm5C_associated_SNPs_35815 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921428 1 0.999536712157143 hm5C_site_35483 DeepMRMD:1;iRNA_m5C:0.999536712157143 35484 chr1 53420459 53420459 1 + G A SKCM 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGAGTAAGAGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.380366427789526 1 0.106358379125595 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420459 nonsynonymous SNV 0.714 5 15 hm5C_associated_SNPs_35816 0 0 1 1 2 Ribosome 1 0.500231522491126 1 0.999536955017748 hm5C_site_35484 DeepMRMD:1;iRNA_m5C:0.999536955017748 35485 chr8 42977920 42977920 1 + C T SKCM 42977935 + 42977915 42977955 41 GACTCCCTCAGAAAGACCCACTGCCCAGGACGTTCTGGAGA GACTCTCTCAGAAAGACCCACTGCCCAGGACGTTCTGGAGA < 41bp 1 0.300876848467658 1 0.0934750139713287 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POMK ENSG00000185900 CDS Human protein_coding chr8:42977935 chr8:42977920 nonsynonymous SNV 0.862 2 6 hm5C_associated_SNPs_35817 0 0 1 0 0 Ribosome 1 0.500231646085919 1 0.999536707828163 hm5C_site_35485 DeepMRMD:1;iRNA_m5C:0.999536707828163 35486 chr18 3457604 3457604 1 + C T SKCM 3457613 + 3457593 3457633 41 TAAGCCGTCATCCCCGGGATCAGTTTTGGCTCGTCCATCAG TAAGCCGTCATTCCCGGGATCAGTTTTGGCTCGTCCATCAG < 41bp 1 0.278471995770766 1 0.0554702579975128 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457613 chr18:3457604 nonsynonymous SNV 0.010 2 12 hm5C_associated_SNPs_35818 1 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_35486 DeepMRMD:1;iRNA_m5C:0.999536712157816 Holoprosencephaly 4 Holoprosencephaly 4 35487 chr18 3457604 3457604 1 + C T SKCM 3457622 + 3457602 3457642 41 ATCCCCGGGATCAGTTTTGGCTCGTCCATCAGTGATCTGCC ATTCCCGGGATCAGTTTTGGCTCGTCCATCAGTGATCTGCC < 41bp 1 0.663536416739039 1 0.243398427963257 experiment 0.672927166521923 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457622 chr18:3457604 nonsynonymous SNV 0.010 2 3 hm5C_associated_SNPs_35819 1 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35487 DeepMRMD:1;iRNA_m5C:0.999536712157815 Holoprosencephaly 4 Holoprosencephaly 4 35488 chr22 41742206 41742206 1 + C T SKCM 41742194 + 41742174 41742214 41 CTGAAGGAGCACCAGGGCATCTTCACCTTCCTCTGCGAGGT CTGAAGGAGCACCAGGGCATCTTCACCTTCCTTTGCGAGGT < 41bp 1 0.346711094264557 1 0.227468639612198 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41742194 chr22:41742206 synonymous SNV . 0 33 hm5C_associated_SNPs_35820 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35488 DeepMRMD:1;iRNA_m5C:0.999536712157815 35489 chr10 126505149 126505149 1 + C T SKCM 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATTCATAACCATCAGCCTTGTTCAAAACTTTTT < 41bp 1 0.278665204554326 1 0.0659747421741486 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505149 synonymous SNV . 0 11 hm5C_associated_SNPs_35821 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35489 DeepMRMD:1;iRNA_m5C:0.999536712157815 35490 chr6 11566004 11566004 1 + G A SKCM 11565991 + 11565971 11566011 41 TGTTTGTGATGCTGCAGAGGCATAGGCAGGGAAGAGTCATC TGTTTGTGATGCTGCAGAGGCATAGGCAGGGAAAAGTCATC < 41bp 1 0.333743372063491 1 0.370188176631927 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM170B ENSG00000205269 CDS Human protein_coding chr6:11565991 chr6:11566004 nonsynonymous SNV 0.994 3 34 hm5C_associated_SNPs_35822 0 0 1 0 1 Nucleus 1 0.500231643921103 1 0.999536712157793 hm5C_site_35490 DeepMRMD:1;iRNA_m5C:0.999536712157793 35491 chr10 104140992 104140992 1 + C T SKCM 104141008 + 104140988 104141028 41 ATTCCATCTGAGCTGGGGGCCTGTGGTGAGTCTCTCTAGCC ATTCTATCTGAGCTGGGGGCCTGTGGTGAGTCTCTCTAGCC < 41bp 1 0.308840490901582 1 0.277062386274338 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104141008 chr10:104140992 nonsynonymous SNV 0.155 4 5 hm5C_associated_SNPs_35823 0 0 1 0 1 Nucleus 1 0.500231643915044 1 0.999536712169912 hm5C_site_35491 DeepMRMD:1;iRNA_m5C:0.999536712169912 35492 chr17 73489155 73489155 1 + C T SKCM 73489149 + 73489129 73489169 41 CGGCGGCCTCCCCTCAGCCACATGATCAGCCTCTTCATTAA CGGCGGCCTCCCCTCAGCCACATGATTAGCCTCTTCATTAA < 41bp 1 0.56523365732328 1 0.118045926094055 experiment 0.86953268535344 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73489149 chr17:73489155 synonymous SNV . 0 27 hm5C_associated_SNPs_35824 0 0 1 0 1 Cytosol 1 0.500231643924182 1 0.999536712151637 hm5C_site_35492 DeepMRMD:1;iRNA_m5C:0.999536712151637 35493 chr22 39918129 39918129 1 + G A SKCM 39918115 + 39918095 39918135 41 CTGGGCAGTGAAGTGGATATCACTGAAGGAGATAGGAAGCC CTGGGCAGTGAAGTGGATATCACTGAAGGAGATAAGAAGCC < 41bp 1 0.632860483935855 1 0.176894456148148 experiment 0.73427903212829 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ATF4 ENSG00000128272 CDS Human protein_coding chr22:39918115 chr22:39918129 nonsynonymous SNV 0.696 0 35 hm5C_associated_SNPs_35825 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35493 DeepMRMD:1;iRNA_m5C:0.999536712157815 35494 chr19 50334627 50334627 1 + C T SKCM 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGGTGAGCGGCCCTTTCCCAGCCCAGCTGGGAG < 41bp 1 0.111226734850244 1 0.144455015659332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334627 nonsynonymous SNV 0.546 3 24 hm5C_associated_SNPs_35826 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35494 DeepMRMD:1;iRNA_m5C:0.999536712157815 35495 chr19 50334627 50334627 1 + C T SKCM 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGGTGAGCGGCCCTTTCCCAGCCCAGCTGGGAGCCCCA < 41bp 1 0.446411054964924 1 0.354237854480743 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334627 nonsynonymous SNV 0.546 3 19 hm5C_associated_SNPs_35827 0 0 1 0 2 chromatin 1 0.50023164392107 1 0.999536712157861 hm5C_site_35495 DeepMRMD:1;iRNA_m5C:0.999536712157861 35496 chr2 3628410 3628410 1 + G A SKCM 3628408 + 3628388 3628428 41 CTTGTAGGTTGAAACTTTTTCTGGTGTCTATAAGAAGCTCA CTTGTAGGTTGAAACTTTTTCTAGTGTCTATAAGAAGCTCA < 41bp 1 0.611770411232202 1 0.450003325939178 experiment 0.776459177535595 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS7 ENSG00000171863 CDS Human protein_coding chr2:3628408 chr2:3628410 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_35828 0 0 1 0 1 Nucleus 1 0.50023164392103 1 0.999536712157939 hm5C_site_35496 DeepMRMD:1;iRNA_m5C:0.999536712157939 35497 chr19 50334628 50334628 1 + C T SKCM 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGGTGAGCGGCCCTTCTCCAGCCCAGCTGGGAG < 41bp 1 0.303975215512136 1 0.143127143383026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334628 synonymous SNV . 0 25 hm5C_associated_SNPs_35829 0 0 1 0 2 chromatin 1 0.500231643921059 1 0.999536712157882 hm5C_site_35497 DeepMRMD:1;iRNA_m5C:0.999536712157882 35498 chr19 50334628 50334628 1 + C T SKCM 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGGTGAGCGGCCCTTCTCCAGCCCAGCTGGGAGCCCCA < 41bp 1 0.534540479953958 1 0.850487768650055 experiment 0.930919040092084 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334628 synonymous SNV . 0 20 hm5C_associated_SNPs_35830 0 0 1 0 2 chromatin 1 0.500231643921092 0.29902446269989 0.999536712157815 hm5C_site_35498 DeepMRMD:0.29902446269989;iRNA_m5C:0.999536712157815 35499 chr1 150257024 150257024 1 + C T SKCM 150257011 + 150256991 150257031 41 AACGTCATTTTCACAGGGAACGTTACCTAGGAACCTTGCTA AACGTCATTTTCACAGGGAACGTTACCTAGGAATCTTGCTA < 41bp 1 0.119321452227323 1 0.0659755766391754 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIART ENSG00000159208 CDS Human protein_coding chr1:150257011 chr1:150257024 nonsynonymous SNV 0.972 3 34 hm5C_associated_SNPs_35831 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35499 DeepMRMD:1;iRNA_m5C:0.999536712157815 35500 chr9 2186140 2186140 1 + C T SKCM 2186154 + 2186134 2186174 41 GAGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG GAGTGCTCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG < 41bp 1 0.207268360258316 1 0.0807017982006073 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186154 chr9:2186140 synonymous SNV . 0 7 hm5C_associated_SNPs_35832 0 0 1 0 1 Nucleus 1 0.500231613510176 1 0.999536772979649 hm5C_site_35500 DeepMRMD:1;iRNA_m5C:0.999536772979649 35501 chr9 2186140 2186140 1 + C T SKCM 2186155 + 2186135 2186175 41 AGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGGA AGTGCTCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGGA < 41bp 1 0.32472089701934 1 0.749306559562683 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186155 chr9:2186140 synonymous SNV . 0 6 hm5C_associated_SNPs_35833 0 0 1 0 1 Nucleus 1 0.500231643914334 0.501386880874634 0.999536712171332 hm5C_site_35501 DeepMRMD:0.501386880874634;iRNA_m5C:0.999536712171332 35502 chr1 150257025 150257025 1 + C T SKCM 150257011 + 150256991 150257031 41 AACGTCATTTTCACAGGGAACGTTACCTAGGAACCTTGCTA AACGTCATTTTCACAGGGAACGTTACCTAGGAACTTTGCTA < 41bp 1 0.121081990022569 1 0.0596437752246857 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIART ENSG00000159208 CDS Human protein_coding chr1:150257011 chr1:150257025 synonymous SNV . 0 35 hm5C_associated_SNPs_35834 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35502 DeepMRMD:1;iRNA_m5C:0.999536712157815 35503 chr17 37358611 37358611 1 + C T SKCM 37358628 + 37358608 37358648 41 ATCCGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG ATCTGCAAGCCTGTGACGGTCCATTCCCGGGCTCGATGCCG < 41bp 1 0.111213877073784 1 0.0311409831047058 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358628 chr17:37358611 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_35835 0 0 1 0 2 chromatin 1 0.500231636708102 1 0.999536726583796 hm5C_site_35503 DeepMRMD:1;iRNA_m5C:0.999536726583796 35504 chr22 39918130 39918130 1 + G A SKCM 39918115 + 39918095 39918135 41 CTGGGCAGTGAAGTGGATATCACTGAAGGAGATAGGAAGCC CTGGGCAGTGAAGTGGATATCACTGAAGGAGATAGAAAGCC < 41bp 1 0.642404433454514 1 0.117468178272247 experiment 0.715191133090972 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ATF4 ENSG00000128272 CDS Human protein_coding chr22:39918115 chr22:39918130 synonymous SNV . 0 36 hm5C_associated_SNPs_35836 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35504 DeepMRMD:1;iRNA_m5C:0.999536712157815 35505 chr5 156816271 156816271 1 + C T SKCM 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTTATCCTGAC < 41bp 1 0.30486518023196 1 0.412791758775711 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816271 synonymous SNV . 0 33 hm5C_associated_SNPs_35837 0 0 1 0 1 Cytosol 1 0.500231627478932 1 0.999536745042135 hm5C_site_35505 DeepMRMD:1;iRNA_m5C:0.999536745042135 35506 chr9 139734209 139734209 1 + C T SKCM 139734201 + 139734181 139734221 41 GACTGACGAGGATGAGGGCCCTGCCGAGCCGCCCCCACCCC GACTGACGAGGATGAGGGCCCTGCCGAGTCGCCCCCACCCC < 41bp 1 0.465703750497108 1 0.227111279964447 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734201 chr9:139734209 nonsynonymous SNV 0.006 1 29 hm5C_associated_SNPs_35838 0 0 1 0 1 chromatin 1 0.500231643921023 1 0.999536712157953 hm5C_site_35506 DeepMRMD:1;iRNA_m5C:0.999536712157953 35507 chr18 9954086 9954086 1 + G A SKCM 9954099 + 9954079 9954119 41 ACATTCGGATAAACCTGGATCAACCTCAACTGCATCCTTCA ACATTCGAATAAACCTGGATCAACCTCAACTGCATCCTTCA < 41bp 1 0.235967652387614 1 0.186499148607254 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VAPA ENSG00000101558 CDS Human protein_coding chr18:9954099 chr18:9954086 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_35840 0 0 1 0 1 Ribosome 1 0.500231642579176 1 0.999536714841647 hm5C_site_35507 DeepMRMD:1;iRNA_m5C:0.999536714841647 35508 chr7 130021485 130021485 1 + G A SKCM 130021476 + 130021456 130021496 41 TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCA TCTTGTCCTCCCCAGCTGGACTTCTGGCGAGGGCCTGCCCA < 41bp 1 0.424456830322056 1 0.0418526232242584 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021476 chr7:130021485 synonymous SNV . 0 30 hm5C_associated_SNPs_35841 0 0 0 0 2 Endoplasmic reticulum 1 0.500230886532287 1 0.999538226935426 hm5C_site_35508 DeepMRMD:1;iRNA_m5C:0.999538226935426 35509 chr7 130021485 130021485 1 + G A SKCM 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCC < 41bp 1 0.150498188864513 1 0.227798253297806 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021485 synonymous SNV . 0 17 hm5C_associated_SNPs_35842 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_35509 DeepMRMD:1;iRNA_m5C:0.999536712157815 35510 chr7 130021485 130021485 1 + G A SKCM 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCA < 41bp 1 0.521995394340741 1 0.376601338386536 experiment 0.956009211318519 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021485 synonymous SNV . 0 16 hm5C_associated_SNPs_35843 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157819 hm5C_site_35510 DeepMRMD:1;iRNA_m5C:0.999536712157819 35511 chr7 130021485 130021485 1 + G A SKCM 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCG < 41bp 1 0.247697230221307 1 0.259491264820099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021485 synonymous SNV . 0 13 hm5C_associated_SNPs_35844 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164382736 1 0.999536712345279 hm5C_site_35511 DeepMRMD:1;iRNA_m5C:0.999536712345279 35512 chr7 130021485 130021485 1 + G A SKCM 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCGA < 41bp 1 0.270978722619186 1 0.133574515581131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021485 synonymous SNV . 0 12 hm5C_associated_SNPs_35845 0 0 0 0 2 Endoplasmic reticulum 1 0.500228503583797 1 0.999542992832407 hm5C_site_35512 DeepMRMD:1;iRNA_m5C:0.999542992832407 35513 chr7 130021485 130021485 1 + G A SKCM 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCGACGT < 41bp 1 0.461341938380098 1 0.0474551618099213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021485 synonymous SNV . 0 9 hm5C_associated_SNPs_35847 0 0 0 0 2 Endoplasmic reticulum 1 0.500231327370619 1 0.999537345258762 hm5C_site_35513 DeepMRMD:1;iRNA_m5C:0.999537345258762 35514 chr7 130021485 130021485 1 + G A SKCM 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGAGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC < 41bp 1 0.605257315495605 1 0.13768270611763 experiment 0.789485369008789 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021485 synonymous SNV . 0 8 hm5C_associated_SNPs_35848 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921124 1 0.999536712157753 hm5C_site_35514 DeepMRMD:1;iRNA_m5C:0.999536712157753 35515 chr7 130021485 130021485 1 + G A SKCM 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGAGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.205481854907981 1 0.0946122705936432 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021485 synonymous SNV . 0 3 hm5C_associated_SNPs_35849 0 0 0 0 2 Endoplasmic reticulum 1 0.500231639562428 1 0.999536720875144 hm5C_site_35515 DeepMRMD:1;iRNA_m5C:0.999536720875144 35516 chr7 130021485 130021485 1 + G A SKCM 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC AGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC < 41bp 1 0.199694007388684 1 0.039365291595459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021485 synonymous SNV . 0 1 hm5C_associated_SNPs_35850 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643940309 1 0.999536712119382 hm5C_site_35516 DeepMRMD:1;iRNA_m5C:0.999536712119382 35517 chr12 107237692 107237692 1 + C T SKCM 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCTCATCGAAACATCCGAAAATTTCTCAAAGA < 41bp 1 0.133436170649748 1 0.263935595750809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237692 synonymous SNV . 0 12 hm5C_associated_SNPs_35851 0 0 0 0 2 Nucleus 1 0.500231643916764 1 0.999536712166472 hm5C_site_35517 DeepMRMD:1;iRNA_m5C:0.999536712166472 35518 chr19 50158053 50158053 1 + C T SKCM 50158043 + 50158023 50158063 41 CTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCGGGCT CTGGGGGGCTGCGGTTCGACCCCCCCCACCTCCACCGGGCT < 41bp 1 0.101486431350166 1 0.100111544132233 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50158043 chr19:50158053 nonsynonymous SNV 0.993 2 31 hm5C_associated_SNPs_35852 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35518 DeepMRMD:1;iRNA_m5C:0.999536712157815 35519 chr11 68115619 68115619 1 + C T SKCM 68115603 + 68115583 68115623 41 GAAGCTGTACTGGACGGACTCAGAGACCAACCGCATCGAGG GAAGCTGTACTGGACGGACTCAGAGACCAACCGCATTGAGG < 41bp 1 0.595219520925491 1 0.867277801036835 experiment 0.809560958149018 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68115603 chr11:68115619 synonymous SNV . 0 37 hm5C_associated_SNPs_35853 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643686263 0.26544439792633 0.999536712627474 hm5C_site_35519 DeepMRMD:0.26544439792633;iRNA_m5C:0.999536712627474 35520 chr19 10940874 10940874 1 + C T SKCM 10940869 + 10940849 10940889 41 CGGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCT CGGCCCCCAGCAGTGAGGGGCCCCATTCCAGGGCCCCCCCT < 41bp 1 0.284534160940878 1 0.0698205530643463 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940869 chr19:10940874 nonsynonymous SNV 0.287 3 26 hm5C_associated_SNPs_35854 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35520 DeepMRMD:1;iRNA_m5C:0.999536712157815 35521 chr19 10940874 10940874 1 + C T SKCM 10940870 + 10940850 10940890 41 GGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTG GGCCCCCAGCAGTGAGGGGCCCCATTCCAGGGCCCCCCCTG < 41bp 1 0.233402065078063 1 0.0533895492553711 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940870 chr19:10940874 nonsynonymous SNV 0.287 3 25 hm5C_associated_SNPs_35855 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35521 DeepMRMD:1;iRNA_m5C:0.999536712157815 35522 chr19 10940874 10940874 1 + C T SKCM 10940871 + 10940851 10940891 41 GCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTGA GCCCCCAGCAGTGAGGGGCCCCATTCCAGGGCCCCCCCTGA < 41bp 1 0.0632742172182039 1 0.0719099044799805 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940871 chr19:10940874 nonsynonymous SNV 0.287 3 24 hm5C_associated_SNPs_35856 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35522 DeepMRMD:1;iRNA_m5C:0.999536712157815 35523 chr7 100210471 100210471 1 + G A SKCM 100210460 + 100210440 100210480 41 AGGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGG AGGAGCTGGTGGGTCCGGGGCCCCCTGGGCGAGGGTCCCGG < 41bp 1 0.302720659113843 1 0.154446512460709 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210460 chr7:100210471 synonymous SNV . 0 32 hm5C_associated_SNPs_35857 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35523 DeepMRMD:1;iRNA_m5C:0.999536712157815 35524 chr7 100210471 100210471 1 + G A SKCM 100210461 + 100210441 100210481 41 GGAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGG GGAGCTGGTGGGTCCGGGGCCCCCTGGGCGAGGGTCCCGGG < 41bp 1 0.483514214348815 1 0.0721583068370819 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210461 chr7:100210471 synonymous SNV . 0 31 hm5C_associated_SNPs_35858 0 0 0 0 0 Cytosol 1 0.500231643921097 1 0.999536712157805 hm5C_site_35524 DeepMRMD:1;iRNA_m5C:0.999536712157805 35525 chr7 100210471 100210471 1 + G A SKCM 100210462 + 100210442 100210482 41 GAGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGG GAGCTGGTGGGTCCGGGGCCCCCTGGGCGAGGGTCCCGGGG < 41bp 1 0.409711344799796 1 0.396471560001373 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210462 chr7:100210471 synonymous SNV . 0 30 hm5C_associated_SNPs_35859 0 0 0 0 0 Cytosol 1 0.500231643921048 1 0.999536712157903 hm5C_site_35525 DeepMRMD:1;iRNA_m5C:0.999536712157903 35526 chr7 100210471 100210471 1 + G A SKCM 100210463 + 100210443 100210483 41 AGCTGGTGGGTCCGGGGCCCCCTGGGCGGGGGTCCCGGGGC AGCTGGTGGGTCCGGGGCCCCCTGGGCGAGGGTCCCGGGGC < 41bp 1 0.672375802079251 1 0.480556726455688 experiment 0.655248395841499 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210463 chr7:100210471 synonymous SNV . 0 29 hm5C_associated_SNPs_35860 0 0 0 0 0 Cytosol 1 0.500231582525561 1 0.999536834948878 hm5C_site_35526 DeepMRMD:1;iRNA_m5C:0.999536834948878 35527 chr7 100210471 100210471 1 + G A SKCM 100210483 + 100210463 100210503 41 CCTGGGCGGGGGTCCCGGGGCGCCCCTCCTCCCTTGGGACC CCTGGGCGAGGGTCCCGGGGCGCCCCTCCTCCCTTGGGACC < 41bp 1 0.56436671562818 1 0.225053727626801 experiment 0.87126656874364 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210483 chr7:100210471 synonymous SNV . 0 9 hm5C_associated_SNPs_35862 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35527 DeepMRMD:1;iRNA_m5C:0.999536712157815 35528 chr19 10940873 10940873 1 + A T SKCM 10940869 + 10940849 10940889 41 CGGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCT CGGCCCCCAGCAGTGAGGGGCCCCTCTCCAGGGCCCCCCCT < 41bp 1 0.0796599728887253 1 0.0281355381011963 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940869 chr19:10940873 nonsynonymous SNV 0.218 2 25 hm5C_associated_SNPs_35863 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35528 DeepMRMD:1;iRNA_m5C:0.999536712157815 35529 chr19 10940873 10940873 1 + A T SKCM 10940870 + 10940850 10940890 41 GGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTG GGCCCCCAGCAGTGAGGGGCCCCTCTCCAGGGCCCCCCCTG < 41bp 1 0.107407059259253 1 0.0447445511817932 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940870 chr19:10940873 nonsynonymous SNV 0.218 2 24 hm5C_associated_SNPs_35864 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35529 DeepMRMD:1;iRNA_m5C:0.999536712157815 35530 chr19 10940873 10940873 1 + A T SKCM 10940871 + 10940851 10940891 41 GCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTGA GCCCCCAGCAGTGAGGGGCCCCTCTCCAGGGCCCCCCCTGA < 41bp 1 0.0651653552060293 1 0.0935187041759491 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940871 chr19:10940873 nonsynonymous SNV 0.218 2 23 hm5C_associated_SNPs_35865 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35530 DeepMRMD:1;iRNA_m5C:0.999536712157815 35531 chr1 65684562 65684562 1 + C T SKCM 65684546 + 65684526 65684566 41 CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTTCTAG < 41bp 1 0.0828130932100926 1 0.182105660438538 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AK4 ENSG00000162433 CDS Human protein_coding chr1:65684546 chr1:65684562 nonsynonymous SNV 0.933 0 37 hm5C_associated_SNPs_35866 0 0 0 0 1 chromatin 1 0.500231641793382 1 0.999536716413236 hm5C_site_35531 DeepMRMD:1;iRNA_m5C:0.999536716413236 35532 chr12 6644008 6644008 1 + G A SKCM 6643991 + 6643971 6644011 41 CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGA CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGATGA < 41bp 1 0.224732193875575 1 0.250742375850677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6643991 chr12:6644008 nonsynonymous SNV 0.591 1 38 hm5C_associated_SNPs_35867 0 0 1 0 2 Ribosome 1 0.500337098113833 1 0.999325803772334 hm5C_site_35532 DeepMRMD:1;iRNA_m5C:0.999325803772334 35533 chr1 237052585 237052585 1 + G A SKCM 237052594 + 237052574 237052614 41 GGCAGCTCCGGGGCAAGTACCCGAATCGAGGCTTTCCCAAG GGCAGCTCCGGAGCAAGTACCCGAATCGAGGCTTTCCCAAG < 41bp 1 0.452386452071517 1 0.809024155139923 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 CDS Human protein_coding chr1:237052594 chr1:237052585 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_35868 0 0 1 0 1 Nucleus 1 0.500231643950219 0.381951689720154 0.999536712099562 hm5C_site_35533 DeepMRMD:0.381951689720154;iRNA_m5C:0.999536712099562 35534 chr12 6644007 6644007 1 + G A SKCM 6643991 + 6643971 6644011 41 CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAGGTGA CGCAGCCGAGCCACATCGCTCAGACACCATGGGGAAAGTGA < 41bp 1 0.208783132982108 1 0.209500402212143 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6643991 chr12:6644007 synonymous SNV . 0 37 hm5C_associated_SNPs_35869 0 0 1 0 2 Ribosome 1 0.500235716158469 1 0.999528567683062 hm5C_site_35534 DeepMRMD:1;iRNA_m5C:0.999528567683062 35535 chr4 153896276 153896276 1 + C T SKCM 153896264 + 153896244 153896284 41 AAACCTCAGGCCTCGGGGGGCCAGGAGGAGGCCCCCAACCC AAACCTCAGGCCTCGGGGGGCCAGGAGGAGGCTCCCAACCC < 41bp 1 0.434063751080719 1 0.536772787570953 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896264 chr4:153896276 synonymous SNV . 0 33 hm5C_associated_SNPs_35870 0 0 0 0 0 Nucleus 1 0.500231643921211 0.926454424858094 0.999536712157577 hm5C_site_35535 DeepMRMD:0.926454424858094;iRNA_m5C:0.999536712157577 35536 chr4 153896276 153896276 1 + C T SKCM 153896278 + 153896258 153896298 41 GGGGGGCCAGGAGGAGGCCCCCAACCCACCCTCAGCACAGG GGGGGGCCAGGAGGAGGCTCCCAACCCACCCTCAGCACAGG < 41bp 1 0.0776038624290407 1 0.338974207639694 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896278 chr4:153896276 synonymous SNV . 0 19 hm5C_associated_SNPs_35871 0 0 0 0 0 Nucleus 1 0.500231642552561 1 0.999536714894878 hm5C_site_35536 DeepMRMD:1;iRNA_m5C:0.999536714894878 35537 chr4 153896276 153896276 1 + C T SKCM 153896279 + 153896259 153896299 41 GGGGGCCAGGAGGAGGCCCCCAACCCACCCTCAGCACAGGC GGGGGCCAGGAGGAGGCTCCCAACCCACCCTCAGCACAGGC < 41bp 1 0.333388699383466 1 0.213056594133377 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896279 chr4:153896276 synonymous SNV . 0 18 hm5C_associated_SNPs_35872 0 0 0 0 0 Nucleus 1 0.500231644318489 1 0.999536711363023 hm5C_site_35537 DeepMRMD:1;iRNA_m5C:0.999536711363023 35538 chr1 237052584 237052584 1 + G A SKCM 237052594 + 237052574 237052614 41 GGCAGCTCCGGGGCAAGTACCCGAATCGAGGCTTTCCCAAG GGCAGCTCCGAGGCAAGTACCCGAATCGAGGCTTTCCCAAG < 41bp 1 0.493065297729144 1 0.684414386749268 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTR ENSG00000116984 CDS Human protein_coding chr1:237052594 chr1:237052584 synonymous SNV . 0 11 hm5C_associated_SNPs_35873 0 0 1 0 1 Nucleus 1 0.500231643921127 0.631171226501464 0.999536712157746 hm5C_site_35538 DeepMRMD:0.631171226501464;iRNA_m5C:0.999536712157746 35539 chr11 14666552 14666552 1 + T C SKCM 14666571 + 14666551 14666591 41 TTGCAAAATATTCAGGAGACCGTCGTTGCCTTGTATTTCCA TCGCAAAATATTCAGGAGACCGTCGTTGCCTTGTATTTCCA < 41bp 1 0.211644216047044 1 0.110804796218872 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14666571 chr11:14666552 nonsynonymous SNV 0.722 0 2 hm5C_associated_SNPs_35874 0 0 0 0 1 chromatin 1 0.500231643959067 1 0.999536712081865 hm5C_site_35539 DeepMRMD:1;iRNA_m5C:0.999536712081865 35540 chr1 109643094 109643094 1 + C T SKCM 109643077 + 109643057 109643097 41 CCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCGAGGCCCCTT CCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCGAGGCCTCTT < 41bp 1 0.677986001820513 1 0.10652169585228 experiment 0.644027996358974 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643077 chr1:109643094 . . 0 38 hm5C_associated_SNPs_35875 0 0 1 0 0 unknown 1 0.500231643943041 1 0.999536712113918 hm5C_site_35540 DeepMRMD:1;iRNA_m5C:0.999536712113918 35541 chr1 109643094 109643094 1 + C T SKCM 109643093 + 109643073 109643113 41 GGGGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCT GGGGCGCTGTGCAGCGAGGCCTCTTAGGCGGCGGCCACGCT < 41bp 1 0.331677707004902 1 0.0804886519908905 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643093 chr1:109643094 . . 0 22 hm5C_associated_SNPs_35877 0 0 1 0 0 unknown 1 0.500231531829458 1 0.999536936341084 hm5C_site_35541 DeepMRMD:1;iRNA_m5C:0.999536936341084 35542 chr1 109643094 109643094 1 + C T SKCM 109643104 + 109643084 109643124 41 CAGCGAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGA CAGCGAGGCCTCTTAGGCGGCGGCCACGCTGTGGTCCCCGA < 41bp 1 0.677677870804307 1 0.697206258773804 experiment 0.644644258391386 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643104 chr1:109643094 . . 0 11 hm5C_associated_SNPs_35879 0 0 1 0 0 unknown 1 0.500231643921092 0.605587482452392 0.999536712157815 hm5C_site_35542 DeepMRMD:0.605587482452392;iRNA_m5C:0.999536712157815 35543 chr1 109643094 109643094 1 + C T SKCM 109643108 + 109643088 109643128 41 GAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGAGGTC GAGGCCTCTTAGGCGGCGGCCACGCTGTGGTCCCCGAGGTC < 41bp 1 0.636504892656151 1 0.523428320884705 experiment 0.726990214687698 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643108 chr1:109643094 . . 0 7 hm5C_associated_SNPs_35880 0 0 1 0 0 unknown 1 0.500231643921062 0.95314335823059 0.999536712157876 hm5C_site_35543 DeepMRMD:0.95314335823059;iRNA_m5C:0.999536712157876 35544 chr19 36572471 36572471 1 + A G SKCM 36572466 + 36572446 36572486 41 CACTGGCAGAAAAACATCTTCAGCAATGTGAGTGGCTTCCT CACTGGCAGAAAAACATCTTCAGCAGTGTGAGTGGCTTCCT < 41bp 1 0.597472992747058 1 0.333958983421326 experiment 0.805054014505883 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36572466 chr19:36572471 nonsynonymous SNV 0.998 0 26 hm5C_associated_SNPs_35881 0 0 1 0 1 Nucleus 1 0.500232103762075 1 0.99953579247585 hm5C_site_35544 DeepMRMD:1;iRNA_m5C:0.99953579247585 35545 chr1 24996708 24996708 1 + C T SKCM 24996688 + 24996668 24996708 41 CGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTC CGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTT < 41bp 1 0.596998037294697 1 0.558761775493622 experiment 0.806003925410605 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996688 chr1:24996708 nonsynonymous SNV 0.879 1 41 hm5C_associated_SNPs_35882 0 0 1 0 1 Cytosol 1 0.500231643922336 0.882476449012756 0.999536712155328 hm5C_site_35545 DeepMRMD:0.882476449012756;iRNA_m5C:0.999536712155328 35546 chr1 24996708 24996708 1 + C T SKCM 24996696 + 24996676 24996716 41 CTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCC CTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTTCATCCCCC < 41bp 1 0.374070831771195 1 0.123581379652023 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996696 chr1:24996708 nonsynonymous SNV 0.879 1 33 hm5C_associated_SNPs_35883 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35546 DeepMRMD:1;iRNA_m5C:0.999536712157815 35547 chr1 24996708 24996708 1 + C T SKCM 24996698 + 24996678 24996718 41 GAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGT GAGCCAGCAGCTAAAAAGCCCCCAGCACCTTCATCCCCCGT < 41bp 1 0.178289647476384 1 0.0867903232574463 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996698 chr1:24996708 nonsynonymous SNV 0.879 1 31 hm5C_associated_SNPs_35885 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35547 DeepMRMD:1;iRNA_m5C:0.999536712157815 35548 chr1 24996708 24996708 1 + C T SKCM 24996703 + 24996683 24996723 41 AGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGT AGCAGCTAAAAAGCCCCCAGCACCTTCATCCCCCGTCCAGT < 41bp 1 0.322160037678875 1 0.0943574905395508 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996703 chr1:24996708 nonsynonymous SNV 0.879 1 26 hm5C_associated_SNPs_35886 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_35548 DeepMRMD:1;iRNA_m5C:0.999536712157814 35549 chr1 24996708 24996708 1 + C T SKCM 24996705 + 24996685 24996725 41 CAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCT CAGCTAAAAAGCCCCCAGCACCTTCATCCCCCGTCCAGTCT < 41bp 1 0.0213024389381381 1 0.0170466303825378 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996705 chr1:24996708 nonsynonymous SNV 0.879 1 24 hm5C_associated_SNPs_35887 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_35549 DeepMRMD:1;iRNA_m5C:0.999536712157815 35550 chr1 24996708 24996708 1 + C T SKCM 24996709 + 24996689 24996729 41 TAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCTCAGT TAAAAAGCCCCCAGCACCTTCATCCCCCGTCCAGTCTCAGT < 41bp 1 0.0782109801478335 1 0.0286351144313812 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996709 chr1:24996708 nonsynonymous SNV 0.879 1 20 hm5C_associated_SNPs_35889 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35550 DeepMRMD:1;iRNA_m5C:0.999536712157815 35551 chr7 101892184 101892184 1 + C T SKCM 101892198 + 101892178 101892218 41 CCTTTTCGGCCTCCCCGAGGCCGCGGGCGCCCGGGACTCGC CCTTTTTGGCCTCCCCGAGGCCGCGGGCGCCCGGGACTCGC < 41bp 1 0.280007872308567 1 0.485862463712692 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101892198 chr7:101892184 synonymous SNV . 0 7 hm5C_associated_SNPs_35890 0 0 1 0 0 Exosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_35551 DeepMRMD:1;iRNA_m5C:0.999536712157817 35552 chr1 109643093 109643093 1 + C T SKCM 109643077 + 109643057 109643097 41 CCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCGAGGCCCCTT CCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCGAGGCTCCTT < 41bp 1 0.681394627851201 1 0.086359441280365 experiment 0.637210744297598 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643077 chr1:109643093 . . 0 37 hm5C_associated_SNPs_35891 0 0 1 0 0 unknown 1 0.500231643921279 1 0.999536712157441 hm5C_site_35552 DeepMRMD:1;iRNA_m5C:0.999536712157441 35553 chr1 109643093 109643093 1 + C T SKCM 109643104 + 109643084 109643124 41 CAGCGAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGA CAGCGAGGCTCCTTAGGCGGCGGCCACGCTGTGGTCCCCGA < 41bp 1 0.699145371079498 1 0.679591655731201 experiment 0.601709257841004 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643104 chr1:109643093 . . 0 10 hm5C_associated_SNPs_35893 0 0 1 0 0 unknown 1 0.500231643921092 0.640816688537598 0.999536712157815 hm5C_site_35553 DeepMRMD:0.640816688537598;iRNA_m5C:0.999536712157815 35554 chr1 109643093 109643093 1 + C T SKCM 109643108 + 109643088 109643128 41 GAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGAGGTC GAGGCTCCTTAGGCGGCGGCCACGCTGTGGTCCCCGAGGTC < 41bp 1 0.661429430404133 1 0.645631790161133 experiment 0.677141139191735 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643108 chr1:109643093 . . 0 6 hm5C_associated_SNPs_35894 0 0 1 0 0 unknown 1 0.500231643873289 0.708736419677734 0.999536712253423 hm5C_site_35554 DeepMRMD:0.708736419677734;iRNA_m5C:0.999536712253423 35555 chr16 28842289 28842289 1 + C T SKCM 28842286 + 28842266 28842306 41 AAAAAAAAACCAAACAGGCCCTTCCCGCATGTCCCCAAAGG AAAAAAAAACCAAACAGGCCCTTTCCGCATGTCCCCAAAGG < 41bp 1 0.0112919769222772 1 0.101621359586716 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28842286 chr16:28842289 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_35895 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35555 DeepMRMD:1;iRNA_m5C:0.999536712157815 35556 chr19 39870640 39870640 1 + C T SKCM 39870630 + 39870610 39870650 41 TCACGGAGACGCAGAAGAAACGGCTGCTATCCTGGAAACAG TCACGGAGACGCAGAAGAAACGGCTGCTATTCTGGAAACAG < 41bp 1 0.595466132117231 1 0.412361443042755 experiment 0.809067735765538 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39870630 chr19:39870640 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_35896 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35556 DeepMRMD:1;iRNA_m5C:0.999536712157815 35557 chr7 133164816 133164816 1 + C T SKCM 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTCGAATCGTCTTCCCATGCCATCAGTA < 41bp 1 0.312694460648564 1 0.140977591276169 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164816 synonymous SNV . 0 25 hm5C_associated_SNPs_35898 0 0 1 0 2 Nucleus 1 0.500231175188822 1 0.999537649622356 hm5C_site_35557 DeepMRMD:1;iRNA_m5C:0.999537649622356 35558 chr7 27211522 27211522 1 + G A SKCM 27211542 - 27211522 27211562 41 GAAAACCGGATCCGGGAGCTCACAGCCAACTTTAATTTTTC GAAAACCGGATCCGGGAGCTCACAGCCAACTTTAATTTTTT < 41bp 1 0.178991771093579 1 0.184329599142075 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOXA10 ENSG00000253293 CDS Human protein_coding chr7:27211542 chr7:27211522 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_35899 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35558 DeepMRMD:1;iRNA_m5C:0.999536712157815 35559 chr15 43816614 43816614 1 + G A SKCM 43816600 + 43816580 43816620 41 TACATCCAGGAGAACCAGCCCTTGGAGAAGCAGAGGAGCGG TACATCCAGGAGAACCAGCCCTTGGAGAAGCAGAAGAGCGG < 41bp 1 0.16275908893696 1 0.666288912296295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP1A ENSG00000166963 CDS Human protein_coding chr15:43816600 chr15:43816614 synonymous SNV . 0 35 hm5C_associated_SNPs_35900 0 0 0 0 0 nucleolus 1 0.500231643921092 0.66742217540741 0.999536712157815 hm5C_site_35559 DeepMRMD:0.66742217540741;iRNA_m5C:0.999536712157815 35560 chrX 23802000 23802000 1 + G A SKCM 23802013 + 23801993 23802033 41 TCCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA TCCGGAAAGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA < 41bp 1 0.0260843815599808 1 0.0910309255123138 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066 CDS Human protein_coding chrX:23802013 chrX:23802000 nonsynonymous SNV 0.984 3 8 hm5C_associated_SNPs_35901 0 0 1 0 2 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_35560 DeepMRMD:1;iRNA_m5C:0.999536712157813 35561 chrX 23802000 23802000 1 + G A SKCM 23802014 + 23801994 23802034 41 CCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC CCGGAAAGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC < 41bp 1 0.0468044789746758 1 0.0809257626533508 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066 CDS Human protein_coding chrX:23802014 chrX:23802000 nonsynonymous SNV 0.984 3 7 hm5C_associated_SNPs_35902 0 0 1 0 2 Ribosome 1 0.500231640792 1 0.999536718416 hm5C_site_35561 DeepMRMD:1;iRNA_m5C:0.999536718416 35562 chrX 23802001 23802001 1 + G A SKCM 23802013 + 23801993 23802033 41 TCCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA TCCGGAAGATAACCCCTCGCCCTTTCCAGAAGCCAGAGAGA < 41bp 1 0.0229686250381163 1 0.0972665548324585 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066;ENSG00000130066 exonic;splicing Human other chrX:23802013 chrX:23802001 nonsynonymous SNV 0.985 4 9 hm5C_associated_SNPs_35903 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_35562 DeepMRMD:1;iRNA_m5C:0.999536712157812 35563 chrX 23802001 23802001 1 + G A SKCM 23802014 + 23801994 23802034 41 CCGGAAGGTAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC CCGGAAGATAACCCCTCGCCCTTTCCAGAAGCCAGAGAGAC < 41bp 1 0.0365012874671654 1 0.0567684769630432 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAT1 ENSG00000130066;ENSG00000130066 exonic;splicing Human other chrX:23802014 chrX:23802001 nonsynonymous SNV 0.985 4 8 hm5C_associated_SNPs_35904 0 0 1 0 1 Ribosome 1 0.500231643920907 1 0.999536712158186 hm5C_site_35563 DeepMRMD:1;iRNA_m5C:0.999536712158186 35564 chr22 41735126 41735126 1 + C T SKCM 41735129 + 41735109 41735149 41 AGGACCCTCCCCAGCACCGACAGCCTGGATGACTTCTCAGA AGGACCCTCCCCAGCACTGACAGCCTGGATGACTTCTCAGA < 41bp 1 0.31473832999766 1 0.0977351069450378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735129 chr22:41735126 synonymous SNV . 0 18 hm5C_associated_SNPs_35905 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643922882 1 0.999536712154237 hm5C_site_35564 DeepMRMD:1;iRNA_m5C:0.999536712154237 35565 chr3 142422804 142422804 1 + C T SKCM 142422814 + 142422794 142422834 41 GAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCT GAAGGGAATTTAACACTTACCCTGGCATTGGTATGGCAGCT < 41bp 1 0.33394922806818 1 0.141684800386429 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142422814 chr3:142422804 nonsynonymous SNV 0.971 1 11 hm5C_associated_SNPs_35906 0 0 1 0 2 Nucleus 1 0.500231643923474 1 0.999536712153051 hm5C_site_35565 DeepMRMD:1;iRNA_m5C:0.999536712153051 35566 chr11 62502871 62502871 1 + G T SKCM 62502861 + 62502841 62502881 41 TTTGGCCCATTAGCTTGTCTCCTTCAGATGGAGCCCGTGAA TTTGGCCCATTAGCTTGTCTCCTTCAGATGTAGCCCGTGAA < 41bp 1 0.0291277899407806 1 0.0454441905021667 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTC9C ENSG00000162222 CDS Human protein_coding chr11:62502861 chr11:62502871 stopgain 1.000 0 31 hm5C_associated_SNPs_35907 0 0 1 0 1 Ribosome 1 0.500231643919585 1 0.999536712160831 hm5C_site_35566 DeepMRMD:1;iRNA_m5C:0.999536712160831 35567 chr1 200826468 200826468 1 + C T SKCM 200826461 + 200826441 200826481 41 GCTCTACAAAGAACCCAGTGCAAAATCCAATAAGCACATAA GCTCTACAAAGAACCCAGTGCAAAATCTAATAAGCACATAA < 41bp 1 0.274297363293234 1 0.44388735294342 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200826461 chr1:200826468 synonymous SNV . 0 28 hm5C_associated_SNPs_35908 0 0 0 0 2 chromatin 1 0.500231643799184 1 0.999536712401632 hm5C_site_35567 DeepMRMD:1;iRNA_m5C:0.999536712401632 35568 chr19 10561305 10561305 1 + C T SKCM 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGGGCGGCCCCACCCTTGTCTGCAAGGCCA < 41bp 1 0.0505112207211987 1 0.0709052085876465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561305 nonsynonymous SNV 0.899 1 27 hm5C_associated_SNPs_35909 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35568 DeepMRMD:1;iRNA_m5C:0.999536712157815 35569 chr17 40931081 40931081 1 + C T SKCM 40931095 + 40931075 40931115 41 CAAGTTCTTCTAGCAGGGACCTGTCTCCCTTTACTTCTTAC CAAGTTTTTCTAGCAGGGACCTGTCTCCCTTTACTTCTTAC < 41bp 1 0.152034032343344 1 0.0759664475917816 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS25 ENSG00000131475 CDS Human protein_coding chr17:40931095 chr17:40931081 synonymous SNV . 0 7 hm5C_associated_SNPs_35910 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_35569 DeepMRMD:1;iRNA_m5C:0.999536712157815 35570 chr22 31673078 31673078 1 + G A SKCM 31673093 + 31673073 31673113 41 CTGCTGGACAAGATCCGGGCCATGCAGAAGCTGAGCACACC CTGCTAGACAAGATCCGGGCCATGCAGAAGCTGAGCACACC < 41bp 1 0.063471956255169 1 0.0346143245697021 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31673093 chr22:31673078 synonymous SNV . 0 6 hm5C_associated_SNPs_35911 0 0 1 0 0 Cytosol 1 0.500231640925725 1 0.99953671814855 hm5C_site_35570 DeepMRMD:1;iRNA_m5C:0.99953671814855 35571 chr12 112229121 112229121 1 + C T SKCM 112229119 + 112229099 112229139 41 TTTGCTCACAGGCTGGCTTTCCCCCTGGTGTGGTCAACATT TTTGCTCACAGGCTGGCTTTCCTCCTGGTGTGGTCAACATT < 41bp 1 0.0657486936482876 1 0.0345618426799774 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229119 chr12:112229121 synonymous SNV . 0 23 hm5C_associated_SNPs_35912 0 0 1 0 1 chromatin 1 0.500231643921358 1 0.999536712157284 hm5C_site_35571 DeepMRMD:1;iRNA_m5C:0.999536712157284 35572 chr15 44673158 44673158 1 + C T SKCM 44673143 + 44673123 44673163 41 CTAAAGCAGGCTACCAAGGACAGAGTCAGTGATTTCCATAA CTAAAGCAGGCTACCAAGGACAGAGTCAGTGATTTTCATAA < 41bp 1 0.455119288579309 1 0.382098495960236 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CASC4 ENSG00000166734 CDS Human protein_coding chr15:44673143 chr15:44673158 synonymous SNV . 0 36 hm5C_associated_SNPs_35913 0 0 1 0 1 Ribosome 1 0.500231643924673 1 0.999536712150654 hm5C_site_35572 DeepMRMD:1;iRNA_m5C:0.999536712150654 35573 chr11 45924081 45924081 1 + C T SKCM 45924098 + 45924078 45924118 41 GCCCCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCGAAT GCCTCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCGAAT < 41bp 1 0.0613714477387269 1 0.132612615823746 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924098 chr11:45924081 nonsynonymous SNV 0.023 0 4 hm5C_associated_SNPs_35914 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921042 1 0.999536712157915 hm5C_site_35573 DeepMRMD:1;iRNA_m5C:0.999536712157915 35574 chr11 45924081 45924081 1 + C T SKCM 45924099 + 45924079 45924119 41 CCCCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCGAATC CCTCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCGAATC < 41bp 1 0.163855098824747 1 0.306488156318665 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924099 chr11:45924081 nonsynonymous SNV 0.023 0 3 hm5C_associated_SNPs_35915 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643583591 1 0.999536712832819 hm5C_site_35574 DeepMRMD:1;iRNA_m5C:0.999536712832819 35575 chr6 7231545 7231545 1 + C T SKCM 7231530 + 7231510 7231550 41 GAAGAGCTGCCCCCGCTGGCCTCCATTGCCCAGATCATCTC GAAGAGCTGCCCCCGCTGGCCTCCATTGCCCAGATTATCTC < 41bp 1 0.587272426032519 1 0.947520852088928 experiment 0.825455147934962 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RREB1 ENSG00000124782 CDS Human protein_coding chr6:7231530 chr6:7231545 synonymous SNV . 0 36 hm5C_associated_SNPs_35916 0 0 1 0 0 Nucleus 1 0.500231643915922 0.104958295822144 0.999536712168156 hm5C_site_35575 DeepMRMD:0.104958295822144;iRNA_m5C:0.999536712168156 35576 chr20 330383 330383 1 + C T SKCM 330392 + 330372 330412 41 CTGCACCTCTTCTATGAGGACTGTGCAGGCACTGCTCTCAG CTGCACCTCTTTTATGAGGACTGTGCAGGCACTGCTCTCAG < 41bp 1 0.323045336471419 1 0.0420265793800354 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRSN2 ENSG00000125841 CDS Human protein_coding chr20:330392 chr20:330383 synonymous SNV . 0 12 hm5C_associated_SNPs_35918 0 0 1 0 1 cytosol 1 0.500231656401813 1 0.999536687196373 hm5C_site_35576 DeepMRMD:1;iRNA_m5C:0.999536687196373 35577 chr19 4222698 4222698 1 + T C SKCM 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC CTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC < 41bp 1 0.296085740404267 1 0.329030096530914 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222698 nonsynonymous SNV 0.983 3 1 hm5C_associated_SNPs_35920 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35577 DeepMRMD:1;iRNA_m5C:0.999536712157815 35578 chr22 42280854 42280854 1 + C T SKCM 42280873 + 42280853 42280893 41 TCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT TTCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGT < 41bp 1 0.313488439672517 1 0.138618797063828 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42280873 chr22:42280854 nonsynonymous SNV 0.992 0 2 hm5C_associated_SNPs_35921 0 0 1 0 1 Ribosome 1 0.500231643921111 1 0.999536712157779 hm5C_site_35578 DeepMRMD:1;iRNA_m5C:0.999536712157779 35579 chr11 44193276 44193276 1 + A G SKCM 44193285 + 44193265 44193305 41 TGAAGAATGGAATGACCCTCCTGCTGTGGTAAGTGAATTCC TGAAGAATGGAGTGACCCTCCTGCTGTGGTAAGTGAATTCC < 41bp 1 0.639376931553477 1 0.230670571327209 experiment 0.721246136893047 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44193285 chr11:44193276 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_35922 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_35579 DeepMRMD:1;iRNA_m5C:0.999536712157815 35580 chr1 57161681 57161681 1 + C T SKCM 57161696 + 57161676 57161716 41 CCCTCCCATTTGATGATGAGCATGTACCTACGTTATTTAAG CCCTCTCATTTGATGATGAGCATGTACCTACGTTATTTAAG < 41bp 1 0.173626941717873 1 0.0320091247558594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57161696 chr1:57161681 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_35923 0 0 1 0 1 Endoplasmic reticulum 1 0.500232413584699 1 0.999535172830601 hm5C_site_35580 DeepMRMD:1;iRNA_m5C:0.999535172830601 35581 chr1 220970049 220970049 1 + T C SKCM 220970029 + 220970009 220970049 41 CAGGGACTGTGGCGAGGCCACCGCCCAGTGGATAACCAGCT CAGGGACTGTGGCGAGGCCACCGCCCAGTGGATAACCAGCC < 41bp 1 0.293346573418661 1 0.180059134960175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970029 chr1:220970049 nonsynonymous SNV 0.482 1 41 hm5C_associated_SNPs_35924 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35581 DeepMRMD:1;iRNA_m5C:0.999536712157815 35582 chrX 73751372 73751372 1 + C T SKCM 73751380 + 73751360 73751400 41 GCTCCCCCAACCCTGAGGAACCAATCTAATGCCTTTCTTGC GCTCCCCCAACCTTGAGGAACCAATCTAATGCCTTTCTTGC < 41bp 1 0.0536211848148517 1 0.0610029697418213 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73751380 chrX:73751372 nonsynonymous SNV 0.783 0 13 hm5C_associated_SNPs_35925 0 0 0 0 0 Ribosome 1 0.50023164354958 1 0.99953671290084 hm5C_site_35582 DeepMRMD:1;iRNA_m5C:0.99953671290084 35583 chr6 44219205 44219205 1 + C T SKCM 44219187 + 44219167 44219207 41 GTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCCCGA GTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCCTGA < 41bp 1 0.339377057810934 1 0.101534873247147 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219187 chr6:44219205 stopgain 0.997 0 39 hm5C_associated_SNPs_35926 0 0 1 0 1 Nucleus 1 0.500231643924972 1 0.999536712150057 hm5C_site_35583 DeepMRMD:1;iRNA_m5C:0.999536712150057 35584 chrX 106884133 106884133 1 + G A SKCM 106884134 + 106884114 106884154 41 TTCCTCCCCTCCATTTAGAGCCGGGCGCCAATCTCAGCCAA TTCCTCCCCTCCATTTAGAACCGGGCGCCAATCTCAGCCAA < 41bp 1 0.481214341267604 1 0.823302328586578 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884134 chrX:106884133 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_35927 0 0 1 0 2 Ribosome 1 0.500231643921092 0.353395342826844 0.999536712157815 hm5C_site_35584 DeepMRMD:0.353395342826844;iRNA_m5C:0.999536712157815 35585 chrX 106884133 106884133 1 + G A SKCM 106884139 + 106884119 106884159 41 CCCCTCCATTTAGAGCCGGGCGCCAATCTCAGCCAAGCTTG CCCCTCCATTTAGAACCGGGCGCCAATCTCAGCCAAGCTTG < 41bp 1 0.597751967237125 1 0.122618794441223 experiment 0.804496065525749 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106884139 chrX:106884133 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_35928 0 0 1 0 2 Ribosome 1 0.5002316439204 1 0.999536712159201 hm5C_site_35585 DeepMRMD:1;iRNA_m5C:0.999536712159201 35586 chr20 37632434 37632434 1 + C T SKCM 37632421 + 37632401 37632441 41 GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACT GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTTGAGCACT < 41bp 1 0.340026577590314 1 0.0509116053581238 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632421 chr20:37632434 stopgain 0.850 1 34 hm5C_associated_SNPs_35929 0 0 1 0 1 Endoplasmic reticulum 1 0.500231609260103 1 0.999536781479794 hm5C_site_35586 DeepMRMD:1;iRNA_m5C:0.999536781479794 35587 chr6 44219204 44219204 1 + C T SKCM 44219187 + 44219167 44219207 41 GTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCCCGA GTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCTCGA < 41bp 1 0.3440503467081 1 0.114313185214996 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219187 chr6:44219204 synonymous SNV . 0 38 hm5C_associated_SNPs_35930 0 0 1 0 1 Nucleus 1 0.500231644197512 1 0.999536711604976 hm5C_site_35587 DeepMRMD:1;iRNA_m5C:0.999536711604976 35588 chr2 27157527 27157527 1 + C T SKCM 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGTGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG < 41bp 1 0.411462279833082 1 0.859765768051147 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157527 nonsynonymous SNV 0.682 5 6 hm5C_associated_SNPs_35931 0 0 0 0 2 Ribosome 1 0.500231643921093 0.280468463897706 0.999536712157814 hm5C_site_35588 DeepMRMD:0.280468463897706;iRNA_m5C:0.999536712157814 35589 chr1 57157100 57157100 1 + T C SKCM 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTCAT < 41bp 1 0.0544587118939268 1 0.120382726192474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157100 synonymous SNV . 0 39 hm5C_associated_SNPs_35933 0 0 1 0 2 Endoplasmic reticulum 1 0.500231218483266 1 0.999537563033468 hm5C_site_35589 DeepMRMD:1;iRNA_m5C:0.999537563033468 35590 chr3 4776914 4776914 1 + T C SKCM 4776929 + 4776909 4776949 41 TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATCGACC TCACCCTGACAAGGAGGGGGCTTCCAATCTAGTTATCGACC < 41bp 1 0.020619668840714 1 0.04947629570961 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4776929 chr3:4776914 nonsynonymous SNV 0.999 5 6 hm5C_associated_SNPs_35934 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35590 DeepMRMD:1;iRNA_m5C:0.999536712157815 35591 chr20 44469644 44469644 1 + C T SKCM 44469656 + 44469636 44469676 41 TGCAAGCCCAGCTGGGCACCCCCTCTGGCCCAGACCGCCCC TGCAAGCCTAGCTGGGCACCCCCTCTGGCCCAGACCGCCCC < 41bp 1 0.196071970206959 1 0.147478759288788 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX21 ENSG00000124104 CDS Human protein_coding chr20:44469656 chr20:44469644 stopgain 0.981 1 9 hm5C_associated_SNPs_35935 0 0 0 0 0 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_35591 DeepMRMD:1;iRNA_m5C:0.999536712157813 35592 chr20 44469643 44469643 1 + C T SKCM 44469656 + 44469636 44469676 41 TGCAAGCCCAGCTGGGCACCCCCTCTGGCCCAGACCGCCCC TGCAAGCTCAGCTGGGCACCCCCTCTGGCCCAGACCGCCCC < 41bp 1 0.214672489249231 1 0.224831700325012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX21 ENSG00000124104 CDS Human protein_coding chr20:44469656 chr20:44469643 synonymous SNV . 0 8 hm5C_associated_SNPs_35936 0 0 0 0 0 Ribosome 1 0.50023164392108 1 0.99953671215784 hm5C_site_35592 DeepMRMD:1;iRNA_m5C:0.99953671215784 35593 chr20 44505977 44505977 1 + C T SKCM 44505985 + 44505965 44506005 41 GGAGACAGTCACCTCTGTGGCCAAGATGCTGAGCATCTTCA GGAGACAGTCACTTCTGTGGCCAAGATGCTGAGCATCTTCA < 41bp 1 0.251575296945089 1 0.150860697031021 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM3 ENSG00000132801 CDS Human protein_coding chr20:44505985 chr20:44505977 synonymous SNV . 0 13 hm5C_associated_SNPs_35937 0 0 0 0 0 Cytosol 1 0.500231643916967 1 0.999536712166066 hm5C_site_35593 DeepMRMD:1;iRNA_m5C:0.999536712166066 35594 chrX 73045207 73045207 1 + C T SKCM 73045203 - 73045183 73045223 41 TGTGGATACAAAGAAAGGAGCAAGCATAAAAAAGTGCTCTT TGTGGATACAAAGAAAAGAGCAAGCATAAAAAAGTGCTCTT < 41bp 1 0.203834677162429 1 0.616791844367981 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045203 chrX:73045207 . . 0 17 hm5C_associated_SNPs_35938 0 0 1 0 0 unknown 1 0.500231640405491 0.766416311264038 0.999536719189017 hm5C_site_35594 DeepMRMD:0.766416311264038;iRNA_m5C:0.999536719189017 35595 chrX 73045207 73045207 1 + C T SKCM 73045215 - 73045195 73045235 41 TGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATAA TGTGATAAGCGTTGTGGATACAAAGAAAAGAGCAAGCATAA < 41bp 1 0.303527888664693 1 0.564899682998657 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045215 chrX:73045207 . . 0 29 hm5C_associated_SNPs_35939 0 0 1 0 0 unknown 1 0.500232027741795 0.870200634002686 0.999535944516409 hm5C_site_35595 DeepMRMD:0.870200634002686;iRNA_m5C:0.999535944516409 35596 chr11 46392868 46392868 1 + C T SKCM 46392886 + 46392866 46392906 41 TTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATTGTGGC TTTCAGCAGAAGTTCACCTTCCACAGCAAGGAGATTGTGGC < 41bp 1 0.30880332866272 1 0.452838480472565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46392886 chr11:46392868 synonymous SNV . 0 3 hm5C_associated_SNPs_35940 0 0 1 0 2 Ribosome 1 0.500231643920991 1 0.999536712158017 hm5C_site_35596 DeepMRMD:1;iRNA_m5C:0.999536712158017 35597 chr6 26204982 26204982 1 + G A SKCM 26204977 + 26204957 26204997 41 GGCATTACCAAGCCTGCCATCCGGCGCCTTGCTCGTCGCGG GGCATTACCAAGCCTGCCATCCGGCACCTTGCTCGTCGCGG < 41bp 1 0.511027025263821 1 0.89104437828064 experiment 0.977945949472358 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIST1H4E ENSG00000198518 CDS Human other chr6:26204977 chr6:26204982 nonsynonymous SNV 0.022 0 26 hm5C_associated_SNPs_35941 0 0 1 0 0 Nucleus 1 0.500231643921093 0.21791124343872 0.999536712157814 hm5C_site_35597 DeepMRMD:0.21791124343872;iRNA_m5C:0.999536712157814 35598 chr2 220502416 220502416 1 + C T SKCM 220502432 + 220502412 220502452 41 GCCCCCCCAGCCCGAGGAACCAGCCCAATACGGCACTGCTC GCCCTCCCAGCCCGAGGAACCAGCCCAATACGGCACTGCTC < 41bp 1 0.394040954127471 1 0.7545405626297 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220502432 chr2:220502416 synonymous SNV . 0 5 hm5C_associated_SNPs_35942 0 0 0 0 0 Cytosol 1 0.500231644055253 0.4909188747406 0.999536711889493 hm5C_site_35598 DeepMRMD:0.4909188747406;iRNA_m5C:0.999536711889493 35599 chr10 129142002 129142002 1 + C T SKCM 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATTCTTA < 41bp 1 0.0364980780739303 1 0.259289383888245 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129142002 synonymous SNV . 0 37 hm5C_associated_SNPs_35943 0 0 0 0 2 Nucleus 1 0.500231644020789 1 0.999536711958423 hm5C_site_35599 DeepMRMD:1;iRNA_m5C:0.999536711958423 35600 chr10 129142002 129142002 1 + C T SKCM 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATTCTTAA < 41bp 1 0.418678111576926 1 0.412891685962677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129142002 synonymous SNV . 0 36 hm5C_associated_SNPs_35944 0 0 0 0 2 Nucleus 1 0.500231643981344 1 0.999536712037312 hm5C_site_35600 DeepMRMD:1;iRNA_m5C:0.999536712037312 35601 chr10 129142002 129142002 1 + C T SKCM 129141995 + 129141975 129142015 41 TTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAACAAGTAAG TTTTTCAAGTGCCAAGAGAGCCAAAATTCTTAACAAGTAAG < 41bp 1 0.0929502811666375 1 0.306327700614929 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141995 chr10:129142002 synonymous SNV . 0 28 hm5C_associated_SNPs_35945 0 0 0 0 2 Nucleus 1 0.50023166265705 1 0.999536674685901 hm5C_site_35601 DeepMRMD:1;iRNA_m5C:0.999536674685901 35602 chr10 129142002 129142002 1 + C T SKCM 129142003 + 129141983 129142023 41 GTGCCAAGAGAGCCAAAATCCTTAACAAGTAAGTTCTCATC GTGCCAAGAGAGCCAAAATTCTTAACAAGTAAGTTCTCATC < 41bp 1 0.278847557663268 1 0.712663769721985 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129142003 chr10:129142002 synonymous SNV . 0 20 hm5C_associated_SNPs_35946 0 0 0 0 2 Nucleus 1 0.50023159266136 0.57467246055603 0.999536814677279 hm5C_site_35602 DeepMRMD:0.57467246055603;iRNA_m5C:0.999536814677279 35603 chr8 9567517 9567517 1 + T G SKCM 9567508 + 9567488 9567528 41 TCCCAAACGTAAACAAGTGACAGAATTGTTACTTAGAAAAG TCCCAAACGTAAACAAGTGACAGAATTGTGACTTAGAAAAG < 41bp 1 0.41988840923392 1 0.334607779979706 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9567508 chr8:9567517 stopgain 0.964 1 30 hm5C_associated_SNPs_35947 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_35603 DeepMRMD:1;iRNA_m5C:0.999536712157812 35604 chr6 7583132 7583132 1 + G A SKCM 7583125 + 7583105 7583145 41 ATATTCCCGCAAGGAGGAGGCTATTAGGAAGATAGAATCGG ATATTCCCGCAAGGAGGAGGCTATTAGAAAGATAGAATCGG < 41bp 1 0.0650343659331593 1 0.0946426689624786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7583125 chr6:7583132 synonymous SNV . 0 28 hm5C_associated_SNPs_35948 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35604 DeepMRMD:1;iRNA_m5C:0.999536712157815 35605 chr7 43506125 43506125 1 + C T SKCM 43506109 + 43506089 43506129 41 AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTCATCA AATCACCTTGCTGCTGCAGTCCCCAGCGGTCAAGTTTATCA < 41bp 1 0.299603351794774 1 0.174091637134552 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HECW1 ENSG00000002746 CDS Human protein_coding chr7:43506109 chr7:43506125 synonymous SNV . 0 37 hm5C_associated_SNPs_35949 0 0 0 0 2 Cytosol 1 0.500233879110406 1 0.999532241779188 hm5C_site_35605 DeepMRMD:1;iRNA_m5C:0.999532241779188 35606 chr22 42273342 42273342 1 + C T SKCM 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGCCTCTCCTTTAACCCCCTGACTTTCCTGCTGCAG < 41bp 1 0.203291299222465 1 0.036710262298584 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273342 nonsynonymous SNV 0.990 0 31 hm5C_associated_SNPs_35950 0 0 1 0 1 Ribosome 1 0.500231643921084 1 0.999536712157833 hm5C_site_35606 DeepMRMD:1;iRNA_m5C:0.999536712157833 35607 chr6 30608368 30608368 1 + C T SKCM 30608360 + 30608340 30608380 41 TCGACACTCTCGTGCTGCTGCAGTCGATCCCACGCCCGCTG TCGACACTCTCGTGCTGCTGCAGTCGATTCCACGCCCGCTG < 41bp 1 0.20353867361347 1 0.609801888465881 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATAT1 ENSG00000137343 CDS Human protein_coding chr6:30608360 chr6:30608368 nonsynonymous SNV 0.043 0 29 hm5C_associated_SNPs_35951 0 0 0 0 2 chromatin 1 0.500231634803733 0.780396223068238 0.999536730392533 hm5C_site_35607 DeepMRMD:0.780396223068238;iRNA_m5C:0.999536730392533 35608 chr5 40979978 40979978 1 + T C SKCM 40979964 + 40979944 40979984 41 CAGCTGTACTCTGCCTGCCTCAGCTGAGAAAGCTTGTGGTG CAGCTGTACTCTGCCTGCCTCAGCTGAGAAAGCTCGTGGTG < 41bp 1 0.618895638752618 1 0.861047267913818 experiment 0.762208722494764 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122268;BS-seq with improved protocol;Spleen;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control C7 ENSG00000112936 CDS Human protein_coding chr5:40979964 chr5:40979978 nonsynonymous SNV 0.784 4 35 hm5C_associated_SNPs_35952 0 0 0 0 0 Endoplasmic reticulum 1 0.500233653325918 0.277905464172364 0.999532693348164 hm5C_site_35608 DeepMRMD:0.277905464172364;iRNA_m5C:0.999532693348164 35609 chr6 26091709 26091709 1 + G A SKCM 26091728 + 26091708 26091748 41 GGAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACC GAAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACC < 41bp 1 0.291953282116861 1 0.177794724702835 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091728 chr6:26091709 nonsynonymous SNV 0.946 3 2 hm5C_associated_SNPs_35953 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643920467 1 0.999536712159066 hm5C_site_35609 DeepMRMD:1;iRNA_m5C:0.999536712159066 35610 chr6 26091709 26091709 1 + G A SKCM 26091729 + 26091709 26091749 41 GAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACCT AAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACCT < 41bp 1 0.419055695529725 1 0.376231670379639 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091729 chr6:26091709 nonsynonymous SNV 0.946 3 1 hm5C_associated_SNPs_35954 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644147458 1 0.999536711705085 hm5C_site_35610 DeepMRMD:1;iRNA_m5C:0.999536711705085 35611 chr19 49377544 49377544 1 + G A SKCM 49377526 + 49377506 49377546 41 TGAAGGCCTGGGTGTATTGGCCAGGAGAGGACACAGAGGAA TGAAGGCCTGGGTGTATTGGCCAGGAGAGGACACAGAGAAA < 41bp 1 0.488122116996749 1 0.796219110488892 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377526 chr19:49377544 nonsynonymous SNV 0.992 2 39 hm5C_associated_SNPs_35955 0 0 1 0 0 Cytosol 1 0.500231643921092 0.407561779022216 0.999536712157815 hm5C_site_35611 DeepMRMD:0.407561779022216;iRNA_m5C:0.999536712157815 35612 chr19 17322819 17322819 1 + C T SKCM 17322803 + 17322783 17322823 41 AAGGCCGTCGTCCTTCGTAACGGTCAGAGTGAAGACCCCCC AAGGCCGTCGTCCTTCGTAACGGTCAGAGTGAAGACTCCCC < 41bp 1 0.164180284305232 1 0.225761920213699 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17322803 chr19:17322819 synonymous SNV . 0 37 hm5C_associated_SNPs_35956 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35612 DeepMRMD:1;iRNA_m5C:0.999536712157815 35613 chr15 40509708 40509708 1 + C T SKCM 40509700 + 40509680 40509720 41 CTTAAATCTGGGCTCAGAATCCACGATCCCTATGATTGTAA CTTAAATCTGGGCTCAGAATCCACGATCTCTATGATTGTAA < 41bp 1 0.148896452037039 1 0.388729512691498 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BUB1B ENSG00000156970 CDS Human protein_coding chr15:40509700 chr15:40509708 nonsynonymous SNV 0.980 0 29 hm5C_associated_SNPs_35957 0 0 1 0 1 Nucleus 1 0.500231409324621 1 0.999537181350757 hm5C_site_35613 DeepMRMD:1;iRNA_m5C:0.999537181350757 35614 chr7 66489954 66489954 1 + C T SKCM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTTCATT < 41bp 1 0.361894886773561 1 0.0993786752223969 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489954 nonsynonymous SNV 0.801 1 37 hm5C_associated_SNPs_35958 0 0 0 1 2 Endoplasmic reticulum 1 0.500231645593331 1 0.999536708813338 hm5C_site_35614 DeepMRMD:1;iRNA_m5C:0.999536708813338 35615 chr6 7572181 7572181 1 + G A SKCM 7572161 + 7572141 7572181 41 CCAACAGAGAAAATGACAAGCAAGAAACATGGATGCTGATG CCAACAGAGAAAATGACAAGCAAGAAACATGGATGCTGATA < 41bp 1 0.494418294105363 1 0.804047822952271 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572161 chr6:7572181 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_35960 0 0 1 0 0 Nucleus 1 0.500231643921103 0.391904354095458 0.999536712157795 hm5C_site_35615 DeepMRMD:0.391904354095458;iRNA_m5C:0.999536712157795 35616 chr6 7572181 7572181 1 + G A SKCM 7572176 + 7572156 7572196 41 ACAAGCAAGAAACATGGATGCTGATGGAGCTGCAGAAGATT ACAAGCAAGAAACATGGATGCTGATAGAGCTGCAGAAGATT < 41bp 1 0.150480985058449 1 0.0892315804958344 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572176 chr6:7572181 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_35961 0 0 1 0 0 Nucleus 1 0.500199124906125 1 0.99960175018775 hm5C_site_35616 DeepMRMD:1;iRNA_m5C:0.99960175018775 35617 chr2 132257781 132257781 1 + T G SKCM 132257787 + 132257767 132257807 41 ATTGTTTCAGGAGCTGCACACCATCTTCCCATGGCTGGTAG ATTGTTTCAGGAGCGGCACACCATCTTCCCATGGCTGGTAG < 41bp 1 0.0591063780322176 1 0.259169697761536 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LOC150776 ENSG00000152117 ncRNA_exonic Human transcribed_processed_pseudogene chr2:132257787 chr2:132257781 . . 0 15 hm5C_associated_SNPs_35962 0 0 1 0 1 unknown 1 0.500245100504535 1 0.99950979899093 hm5C_site_35617 DeepMRMD:1;iRNA_m5C:0.99950979899093 35618 chr1 86048110 86048110 1 + G A SKCM 86048095 + 86048075 86048115 41 GTCTTCCCTCTTATATGTCTCTAGTTTTTGGAATGGAGCCT GTCTTCCCTCTTATATGTCTCTAGTTTTTGGAATGAAGCCT < 41bp 1 0.234431970609686 1 0.322045922279358 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048095 chr1:86048110 nonsynonymous SNV 0.976 2 36 hm5C_associated_SNPs_35963 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921086 1 0.999536712157828 hm5C_site_35618 DeepMRMD:1;iRNA_m5C:0.999536712157828 35619 chr19 17450299 17450299 1 + G A SKCM 17450306 + 17450286 17450326 41 CCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTC CCGTGACGTGCTGAAGACCCCAGTCGACCTGGCCGGATTTC < 41bp 1 0.27254026861995 1 0.848119378089905 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450306 chr19:17450299 nonsynonymous SNV 0.998 4 14 hm5C_associated_SNPs_35964 0 0 1 0 1 Ribosome 1 0.500231633029982 0.30376124382019 0.999536733940037 hm5C_site_35619 DeepMRMD:0.30376124382019;iRNA_m5C:0.999536733940037 35620 chr7 150773192 150773192 1 + C T SKCM 150773187 + 150773167 150773207 41 TCATGTCCACAGCTGCCTCCCTGGCCTTCCCCTTCATCCTC TCATGTCCACAGCTGCCTCCCTGGCTTTCCCCTTCATCCTC < 41bp 1 0.666963673459539 1 0.167963474988937 experiment 0.666072653080922 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773187 chr7:150773192 synonymous SNV . 0 26 hm5C_associated_SNPs_35965 0 0 1 0 2 Ribosome 1 0.500231644073209 1 0.999536711853582 hm5C_site_35620 DeepMRMD:1;iRNA_m5C:0.999536711853582 35621 chr7 150773192 150773192 1 + C T SKCM 150773195 + 150773175 150773215 41 ACAGCTGCCTCCCTGGCCTTCCCCTTCATCCTCATCCTCAC ACAGCTGCCTCCCTGGCTTTCCCCTTCATCCTCATCCTCAC < 41bp 1 0.255413661333458 1 0.0438805818557739 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773195 chr7:150773192 synonymous SNV . 0 18 hm5C_associated_SNPs_35966 0 0 1 0 2 Ribosome 1 0.500231643921733 1 0.999536712156534 hm5C_site_35621 DeepMRMD:1;iRNA_m5C:0.999536712156534 35622 chr11 119142544 119142544 1 + T C SKCM 119142558 + 119142538 119142578 41 TCGGATTACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG TCGGATCACTAAAGCAGATGCTGCGGAATTTTGGAGAAAAG < 41bp 1 0.316360951223643 1 0.190338313579559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CBL ENSG00000110395 CDS Human protein_coding chr11:119142558 chr11:119142544 synonymous SNV . 0 7 hm5C_associated_SNPs_35967 0 0 0 0 2 Ribosome 1 0.500231643904252 1 0.999536712191497 hm5C_site_35622 DeepMRMD:1;iRNA_m5C:0.999536712191497 35623 chr10 5963508 5963508 1 + C T SKCM 5963513 + 5963493 5963533 41 GACGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG GACGGAAGGGGAATTTCCTTCAAGGATACATTTGATTGGGG < 41bp 1 0.681983663733223 1 0.750527739524841 experiment 0.636032672533554 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963513 chr10:5963508 synonymous SNV . 0 16 hm5C_associated_SNPs_35968 0 0 1 0 2 Ribosome 1 0.500231643921092 0.498944520950318 0.999536712157815 hm5C_site_35623 DeepMRMD:0.498944520950318;iRNA_m5C:0.999536712157815 35624 chr7 66489955 66489955 1 + C T SKCM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCTATT < 41bp 1 0.381069277877289 1 0.0861095786094666 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489955 synonymous SNV . 0 38 hm5C_associated_SNPs_35969 0 0 0 1 2 Endoplasmic reticulum 1 0.500232762189376 1 0.999534475621248 hm5C_site_35624 DeepMRMD:1;iRNA_m5C:0.999534475621248 35625 chr10 17278314 17278314 1 + C T SKCM 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCTTCTGGTTGATACCCACTCAAAA < 41bp 1 0.282141963747637 1 0.558608770370483 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278314 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_35970 0 0 1 0 2 Ribosome 1 0.500231643582681 0.882782459259034 0.999536712834638 hm5C_site_35625 DeepMRMD:0.882782459259034;iRNA_m5C:0.999536712834638 35626 chr15 22993143 22993143 1 + C T SKCM 22993125 + 22993105 22993145 41 CGGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGA CGGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATTGA < 41bp 1 0.227067932771166 1 0.0582908093929291 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993125 chr15:22993143 synonymous SNV . 0 39 hm5C_associated_SNPs_35971 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_35626 DeepMRMD:1;iRNA_m5C:0.999536712157816 35627 chr15 22993143 22993143 1 + C T SKCM 22993126 + 22993106 22993146 41 GGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGAG GGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATTGAG < 41bp 1 0.377426171781657 1 0.20545494556427 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993126 chr15:22993143 synonymous SNV . 0 38 hm5C_associated_SNPs_35972 0 0 1 0 0 Cytosol 1 0.500231644010504 1 0.999536711978992 hm5C_site_35627 DeepMRMD:1;iRNA_m5C:0.999536711978992 35628 chr17 28772953 28772953 1 + C T SKCM 28772959 + 28772939 28772979 41 ATCTGGCTCTGGCTCTTTATCGATACCATTCCTACAAAGAC ATCTGGCTCTGGCTTTTTATCGATACCATTCCTACAAAGAC < 41bp 1 0.54778061550871 1 0.829916834831238 experiment 0.904438768982579 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPD ENSG00000108582 CDS Human protein_coding chr17:28772959 chr17:28772953 nonsynonymous SNV 0.999 1 15 hm5C_associated_SNPs_35973 0 0 1 0 1 Nucleus 1 0.500231643921092 0.340166330337524 0.999536712157815 hm5C_site_35628 DeepMRMD:0.340166330337524;iRNA_m5C:0.999536712157815 35629 chr19 40719522 40719522 1 + C T SKCM 40719537 + 40719517 40719557 41 CCTCCCCGGGGGCGCGGGCGCCGTGGGAGCCGACGCCGTCC CCTCCTCGGGGGCGCGGGCGCCGTGGGAGCCGACGCCGTCC < 41bp 1 0.673294886653238 1 0.60652494430542 experiment 0.653410226693523 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40719537 chr19:40719522 nonsynonymous SNV 0.160 0 6 hm5C_associated_SNPs_35974 0 0 0 0 1 Endoplasmic reticulum 1 0.500231678775963 0.78695011138916 0.999536642448074 hm5C_site_35629 DeepMRMD:0.78695011138916;iRNA_m5C:0.999536642448074 35630 chr5 149925012 149925012 1 + C A SKCM 149925006 + 149924986 149925026 41 CCCAAAGCCAAGGTCCTGACCATCCTCATCAACCCCGCGGA CCCAAAGCCAAGGTCCTGACCATCCTAATCAACCCCGCGGA < 41bp 1 0.167010576265542 1 0.0285009741783142 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDST1 ENSG00000070614 CDS Human protein_coding chr5:149925006 chr5:149925012 synonymous SNV . 0 27 hm5C_associated_SNPs_35975 0 0 1 0 1 Cytosol 1 0.500231647087218 1 0.999536705825565 hm5C_site_35630 DeepMRMD:1;iRNA_m5C:0.999536705825565 35631 chr11 67075683 67075683 1 + C T SKCM 67075677 + 67075657 67075697 41 CTGGAGCTGCGCCTGGGGCTCCCCCTCCAGCAGTACCGTGA CTGGAGCTGCGCCTGGGGCTCCCCCTTCAGCAGTACCGTGA < 41bp 1 0.234127988834647 1 0.0591522753238678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075677 chr11:67075683 synonymous SNV . 0 27 hm5C_associated_SNPs_35976 0 0 1 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35631 DeepMRMD:1;iRNA_m5C:0.999536712157815 35632 chr6 43188298 43188298 1 + C T SKCM 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCCAGCCCACCGGAGCCTTTATTCGTGCCATCGTCTC < 41bp 1 0.297554466738833 1 0.0922750234603882 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188298 synonymous SNV . 0 24 hm5C_associated_SNPs_35977 0 0 0 0 1 chromatin 1 0.500231643921083 1 0.999536712157833 hm5C_site_35632 DeepMRMD:1;iRNA_m5C:0.999536712157833 35633 chr17 65909118 65909118 1 + A G SKCM 65909116 + 65909096 65909136 41 CTCGTTCAGGTACAGCTCTGCCATCCTATAGAAAATTTGTT CTCGTTCAGGTACAGCTCTGCCGTCCTATAGAAAATTTGTT < 41bp 1 0.00817831184844361 1 0.0822014510631561 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65909116 chr17:65909118 synonymous SNV . 0 23 hm5C_associated_SNPs_35978 0 0 1 0 0 Cytosol 1 0.50023164382942 1 0.999536712341159 hm5C_site_35633 DeepMRMD:1;iRNA_m5C:0.999536712341159 35634 chr1 155156586 155156586 1 + G A SKCM 155156595 + 155156575 155156615 41 TCATCGGGGGTGGCGCAGTACAGCTCCAGGAGCCAGTGGGC TCATCGGGGGTAGCGCAGTACAGCTCCAGGAGCCAGTGGGC < 41bp 1 0.561597565912253 1 0.180839419364929 experiment 0.876804868175495 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155156595 chr1:155156586 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_35979 0 0 0 0 0 nucleolus 1 0.500231643921086 1 0.999536712157828 hm5C_site_35634 DeepMRMD:1;iRNA_m5C:0.999536712157828 35635 chr12 122213562 122213562 1 + C T SKCM 122213570 + 122213550 122213590 41 CCTCGGCAACTTCCTGACCACGCTCAAAGTCGTGCATGCCA CCTCGGCAACTTTCTGACCACGCTCAAAGTCGTGCATGCCA < 41bp 1 0.10027162016434 1 0.0802081227302551 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM120B ENSG00000188735 CDS Human protein_coding chr12:122213570 chr12:122213562 nonsynonymous SNV 0.902 0 13 hm5C_associated_SNPs_35980 0 0 1 0 1 Ribosome 1 0.500231565113502 1 0.999536869772997 hm5C_site_35635 DeepMRMD:1;iRNA_m5C:0.999536869772997 35636 chr10 72324250 72324250 1 + G A SKCM 72324236 + 72324216 72324256 41 TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAAGCCCTT < 41bp 1 0.159129769508906 1 0.350291639566422 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72324236 chr10:72324250 nonsynonymous SNV 0.992 1 35 hm5C_associated_SNPs_35981 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35636 DeepMRMD:1;iRNA_m5C:0.999536712157815 35637 chr8 38899577 38899577 1 + C T SKCM 38899581 + 38899561 38899601 41 TGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTGGTGG TGAAGCCTATAGTGCTTCCTCCTGTGGTAATAAGTTGGTGG < 41bp 1 0.215399995881178 1 0.458009839057922 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899581 chr8:38899577 nonsynonymous SNV 0.997 4 17 hm5C_associated_SNPs_35982 0 0 1 0 1 Ribosome 1 0.500231643920999 1 0.999536712158002 hm5C_site_35637 DeepMRMD:1;iRNA_m5C:0.999536712158002 35638 chr10 103292172 103292172 1 + C T SKCM 103292177 + 103292157 103292197 41 ATAGTAAGCGGCCTTCGAGACAACACAATCAAGGTGAGGTC ATAGTAAGCGGCCTTTGAGACAACACAATCAAGGTGAGGTC < 41bp 1 0.581043602395974 1 0.326262354850769 experiment 0.837912795208053 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BTRC ENSG00000166167 CDS Human protein_coding chr10:103292177 chr10:103292172 stopgain 0.997 1 16 hm5C_associated_SNPs_35983 0 0 0 0 1 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_35638 DeepMRMD:1;iRNA_m5C:0.999536712157814 35639 chr2 242396267 242396267 1 + C T SKCM 242396274 + 242396254 242396294 41 GAACAGGGCTCATCCCCACTCCTGAGCCCTGTCCTCAGTGA GAACAGGGCTCATTCCCACTCCTGAGCCCTGTCCTCAGTGA < 41bp 1 0.58679952885006 1 0.475684434175491 experiment 0.826400942299879 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242396274 chr2:242396267 nonsynonymous SNV 0.011 2 14 hm5C_associated_SNPs_35984 0 0 0 0 1 Nucleus 1 0.500231643925636 1 0.999536712148728 hm5C_site_35639 DeepMRMD:1;iRNA_m5C:0.999536712148728 35640 chr19 49993751 49993751 1 + C T SKCM 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCCTTCGCAAGCGGATGAACACC < 41bp 1 0.544224542190639 1 0.0765743255615234 experiment 0.911550915618722 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993751 synonymous SNV . 0 23 hm5C_associated_SNPs_35986 0 0 1 0 2 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_35640 DeepMRMD:1;iRNA_m5C:0.999536712157812 35641 chr19 49993752 49993752 1 + C T SKCM 49993749 + 49993729 49993769 41 TAGTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACC TAGTGAAGTACCTGGCTTTCCTCTGCAAGCGGATGAACACC < 41bp 1 0.609981887079809 1 0.167014867067337 experiment 0.780036225840381 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993749 chr19:49993752 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_35987 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35641 DeepMRMD:1;iRNA_m5C:0.999536712157815 35642 chr5 172386889 172386889 1 + C T SKCM 172386906 + 172386886 172386926 41 AATCCCTTCGTTACCTCGGACCGCAGTAAAAACCGCAAACG AATTCCTTCGTTACCTCGGACCGCAGTAAAAACCGCAAACG < 41bp 1 0.658571553413818 1 0.222514867782593 experiment 0.682856893172364 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172386906 chr5:172386889 nonsynonymous SNV 0.956 0 4 hm5C_associated_SNPs_35988 0 0 1 0 1 Ribosome 1 0.500231643576233 1 0.999536712847533 hm5C_site_35642 DeepMRMD:1;iRNA_m5C:0.999536712847533 35643 chr19 11105632 11105632 1 + G A SKCM 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ATGCCAACACGGAGCGGGAGCAGAAAAAAGAGAACGAGCGG < 41bp 1 0.589175336620489 1 0.618752896785736 experiment 0.821649326759021 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105632 synonymous SNV . 0 26 hm5C_associated_SNPs_35989 0 0 1 0 1 Nucleus 1 0.50023164324706 0.762494206428528 0.999536713505879 hm5C_site_35643 DeepMRMD:0.762494206428528;iRNA_m5C:0.999536713505879 35644 chr1 235577778 235577778 1 + G A SKCM 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCCGACAGGAGGATCCTTTATTCGTCCAAACAAGG < 41bp 1 0.011604665527564 1 0.058920830488205 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577778 synonymous SNV . 0 34 hm5C_associated_SNPs_35990 0 0 1 1 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35644 DeepMRMD:1;iRNA_m5C:0.999536712157815 35645 chr16 28950019 28950019 1 + G A SKCM 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATAA < 41bp 1 0.096420925418294 1 0.0995245575904846 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950019 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_35992 0 0 1 0 3 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35645 DeepMRMD:1;iRNA_m5C:0.999536712157815 35646 chr16 28950019 28950019 1 + G A SKCM 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATAAG < 41bp 1 0.0399710218033112 1 0.0513867735862732 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950019 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_35993 0 0 1 0 3 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35646 DeepMRMD:1;iRNA_m5C:0.999536712157815 35647 chr16 28950019 28950019 1 + G A SKCM 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATAAGA < 41bp 1 0.0749282633687388 1 0.145787209272385 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950019 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_35994 0 0 1 0 3 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35647 DeepMRMD:1;iRNA_m5C:0.999536712157815 35648 chr1 24996657 24996657 1 + C A SKCM 24996652 + 24996632 24996672 41 GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGT GTCTGTAAGAAGGGTCTCATCCTCCAGATCTGTCTCCGGGT < 41bp 1 0.21164508877743 1 0.103985458612442 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996652 chr1:24996657 synonymous SNV . 0 26 hm5C_associated_SNPs_35995 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35648 DeepMRMD:1;iRNA_m5C:0.999536712157815 35649 chr1 24996657 24996657 1 + C A SKCM 24996673 + 24996653 24996693 41 CTCCCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA CTCCAGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA < 41bp 1 0.594042757874552 1 0.0278659164905548 experiment 0.811914484250896 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996673 chr1:24996657 synonymous SNV . 0 5 hm5C_associated_SNPs_35996 0 0 1 0 1 Cytosol 1 0.500231643921118 1 0.999536712157764 hm5C_site_35649 DeepMRMD:1;iRNA_m5C:0.999536712157764 35650 chr1 24996657 24996657 1 + C A SKCM 24996676 + 24996656 24996696 41 CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC CAGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC < 41bp 1 0.584981988573968 1 0.391006827354431 experiment 0.830036022852064 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996676 chr1:24996657 synonymous SNV . 0 2 hm5C_associated_SNPs_35997 0 0 1 0 1 Cytosol 1 0.500231644015317 1 0.999536711969367 hm5C_site_35650 DeepMRMD:1;iRNA_m5C:0.999536711969367 35651 chr9 4697137 4697137 1 + G C SKCM 4697148 + 4697128 4697168 41 TTTTTGTCTGACCATCCATACCTTGTATGTGAAGAAACTGC TTTTTGTCTCACCATCCATACCTTGTATGTGAAGAAACTGC < 41bp 1 0.0458768972427765 1 0.0483539700508118 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4697148 chr9:4697137 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_35998 0 0 1 0 2 Ribosome 1 0.500231648686793 1 0.999536702626413 hm5C_site_35651 DeepMRMD:1;iRNA_m5C:0.999536702626413 35652 chr3 50614591 50614591 1 + C T SKCM 50614597 + 50614577 50614617 41 CAGGAGCCATCTCCCTCAGCCTGCTGAGCCAGCTCCCCCAG CAGGAGCCATCTCCTTCAGCCTGCTGAGCCAGCTCCCCCAG < 41bp 1 0.638661056747557 1 0.309989273548126 experiment 0.722677886504886 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614597 chr3:50614591 nonsynonymous SNV 0.697 4 15 hm5C_associated_SNPs_35999 0 0 0 0 1 Ribosome 1 0.500231643921548 1 0.999536712156904 hm5C_site_35652 DeepMRMD:1;iRNA_m5C:0.999536712156904 35653 chr9 134382804 134382804 1 + C T SKCM 134382812 + 134382792 134382832 41 GCTGCCAGCACTCGCGGGGGCCTTGTCGGTCCCCATGGCCT GCTGCCAGCACTTGCGGGGGCCTTGTCGGTCCCCATGGCCT < 41bp 1 0.0563571326008691 1 0.0561303794384003 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control POMT1 ENSG00000130714 CDS Human protein_coding chr9:134382812 chr9:134382804 synonymous SNV . 0 13 hm5C_associated_SNPs_36000 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643930806 1 0.999536712138388 hm5C_site_35653 DeepMRMD:1;iRNA_m5C:0.999536712138388 35654 chrX 152037407 152037407 1 + C T SKCM 152037426 + 152037406 152037446 41 GCCCCCAAGTACCACATCCCCTACTGGGTGGCCTACTACCT GTCCCCAAGTACCACATCCCCTACTGGGTGGCCTACTACCT < 41bp 1 0.52631310446461 1 0.0267917811870575 experiment 0.94737379107078 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSDHL ENSG00000147383 CDS Human protein_coding chrX:152037426 chrX:152037407 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_36001 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35654 DeepMRMD:1;iRNA_m5C:0.999536712157815 35655 chrX 152037408 152037408 1 + C T SKCM 152037426 + 152037406 152037446 41 GCCCCCAAGTACCACATCCCCTACTGGGTGGCCTACTACCT GCTCCCAAGTACCACATCCCCTACTGGGTGGCCTACTACCT < 41bp 1 0.588146580570876 1 0.0311009287834167 experiment 0.823706838858248 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSDHL ENSG00000147383 CDS Human protein_coding chrX:152037426 chrX:152037408 synonymous SNV . 0 3 hm5C_associated_SNPs_36002 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_35655 DeepMRMD:1;iRNA_m5C:0.999536712157815 35656 chrX 153608125 153608125 1 + C T SKCM 153608138 + 153608118 153608158 41 CCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA CCCAGCTTGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGA < 41bp 1 0.44197570031401 1 0.154167145490646 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608138 chrX:153608125 nonsynonymous SNV 0.079 3 8 hm5C_associated_SNPs_36003 0 0 1 0 2 Ribosome 1 0.500231645616938 1 0.999536708766125 hm5C_site_35656 DeepMRMD:1;iRNA_m5C:0.999536708766125 35657 chrX 153608125 153608125 1 + C T SKCM 153608140 + 153608120 153608160 41 CAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA CAGCTTGTCCGCCGCCTCCTCTTATAGCTTCTCTGGTGAGA < 41bp 1 0.244472854517618 1 0.153422713279724 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EMD ENSG00000102119 CDS Human protein_coding chrX:153608140 chrX:153608125 nonsynonymous SNV 0.079 3 6 hm5C_associated_SNPs_36004 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35657 DeepMRMD:1;iRNA_m5C:0.999536712157815 35658 chr8 41355112 41355112 1 + C T SKCM 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGCCAGTCATATTTCGAAGGTTGT < 41bp 1 0.111840628155382 1 0.198799312114716 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355112 nonsynonymous SNV 0.786 1 30 hm5C_associated_SNPs_36005 0 0 1 0 2 Ribosome 1 0.500231643918095 1 0.999536712163811 hm5C_site_35658 DeepMRMD:1;iRNA_m5C:0.999536712163811 35659 chr16 30096328 30096328 1 + C T SKCM 30096347 + 30096327 30096367 41 CCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC CTCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC < 41bp 1 0.311943630987438 1 0.110338866710663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096347 chr16:30096328 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_36006 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35659 DeepMRMD:1;iRNA_m5C:0.999536712157815 35660 chr12 21207484 21207484 1 + G A SKCM 21207493 + 21207473 21207513 41 GCTTGTACAAGGAAATCTTACGTTTATTTTGTAATTCAAGT GCTTGTACAAGAAAATCTTACGTTTATTTTGTAATTCAAGT < 41bp 1 0.0701047723443588 1 0.080780953168869 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21207493 chr12:21207484 synonymous SNV . 0 12 hm5C_associated_SNPs_36007 0 0 0 0 2 nucleus 1 0.500231775467148 1 0.999536449065704 hm5C_site_35660 DeepMRMD:1;iRNA_m5C:0.999536449065704 35661 chr2 11905806 11905806 1 + C T SKCM 11905811 + 11905791 11905831 41 AACCTCCAATGCTCCCCTTTCCACGTCCGCTTTGGGAAGAT AACCTCCAATGCTCCTCTTTCCACGTCCGCTTTGGGAAGAT < 41bp 1 0.344984681172678 1 0.735475838184357 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LPIN1 ENSG00000134324 CDS Human protein_coding chr2:11905811 chr2:11905806 nonsynonymous SNV 0.977 3 16 hm5C_associated_SNPs_36008 0 0 1 0 0 Cytosol 1 0.500231321553563 0.529048323631286 0.999537356892873 hm5C_site_35661 DeepMRMD:0.529048323631286;iRNA_m5C:0.999537356892873 35662 chr19 50880901 50880901 1 + G A SKCM 50880899 + 50880879 50880919 41 CGAGTTCCCTGGATACCCCCCTGCCTGGTGAGTGACTCTCT CGAGTTCCCTGGATACCCCCCTACCTGGTGAGTGACTCTCT < 41bp 1 0.113191635704976 1 0.627987265586853 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50880899 chr19:50880901 synonymous SNV . 0 23 hm5C_associated_SNPs_36009 0 0 0 0 2 Ribosome 1 0.500231643921346 0.744025468826294 0.999536712157307 hm5C_site_35662 DeepMRMD:0.744025468826294;iRNA_m5C:0.999536712157307 35663 chr19 42373237 42373237 1 + C T SKCM 42373228 + 42373208 42373248 41 CGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCT CGAGGCTCCAAGAGTGTGGCCCGCCGGGTTCTCCAAGCCCT < 41bp 1 0.233837575827331 1 0.0750759840011597 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373228 chr19:42373237 synonymous SNV . 0 30 hm5C_associated_SNPs_36010 0 0 1 0 1 Cytosol 1 0.500231643921046 1 0.999536712157909 hm5C_site_35663 DeepMRMD:1;iRNA_m5C:0.999536712157909 35664 chr19 42373237 42373237 1 + C T SKCM 42373231 + 42373211 42373251 41 GGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGA GGCTCCAAGAGTGTGGCCCGCCGGGTTCTCCAAGCCCTGGA < 41bp 1 0.697623756302245 1 0.452813267707825 experiment 0.604752487395509 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373231 chr19:42373237 synonymous SNV . 0 27 hm5C_associated_SNPs_36011 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35664 DeepMRMD:1;iRNA_m5C:0.999536712157815 35665 chr7 100200132 100200132 1 + C T SKCM 100200134 + 100200114 100200154 41 CCCTCCTCACTGCCTGCGCCCTGCTGCCTTTTGCCCAGGGC CCCTCCTCACTGCCTGCGTCCTGCTGCCTTTTGCCCAGGGC < 41bp 1 0.280459501271405 1 0.383491396903992 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100200134 chr7:100200132 nonsynonymous SNV 0.992 1 19 hm5C_associated_SNPs_36012 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35665 DeepMRMD:1;iRNA_m5C:0.999536712157815 35666 chr4 169630191 169630191 1 + C T SKCM 169630201 + 169630181 169630221 41 GAGATTTGCACCCTAGTTATCGCTGAGACTTTCCCTGAAGA GAGATTTGCATCCTAGTTATCGCTGAGACTTTCCCTGAAGA < 41bp 1 0.214492973101602 1 0.504497110843658 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169630201 chr4:169630191 nonsynonymous SNV 0.914 3 11 hm5C_associated_SNPs_36013 0 0 0 0 1 Cytosol 1 0.500231643921199 0.991005778312684 0.999536712157602 hm5C_site_35666 DeepMRMD:0.991005778312684;iRNA_m5C:0.999536712157602 35667 chr11 67258443 67258443 1 + C T SKCM 67258452 + 67258432 67258472 41 AAAGCCCGGTTCCGGGGGATCTTCTCCCATTGACAGGAGCA AAAGCCCGGTTTCGGGGGATCTTCTCCCATTGACAGGAGCA < 41bp 1 0.131647159558404 1 0.0820195376873016 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AIP ENSG00000110711 CDS Human protein_coding chr11:67258452 chr11:67258443 synonymous SNV . 0 12 hm5C_associated_SNPs_36014 0 0 1 0 0 Ribosome 1 0.500231643920959 1 0.999536712158081 hm5C_site_35667 DeepMRMD:1;iRNA_m5C:0.999536712158081 35668 chr5 14280524 14280524 1 + C T SKCM 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAGACTCATTTTCTATCTAGCCTGT < 41bp 1 0.264119716653161 1 0.0876598060131073 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280524 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_36015 0 0 1 0 2 Nucleus 1 0.500231644081764 1 0.999536711836472 hm5C_site_35668 DeepMRMD:1;iRNA_m5C:0.999536711836472 35669 chr1 154306661 154306661 1 + C T SKCM 154306671 + 154306651 154306691 41 AATAAGTTCCCTCTGAGCAACCAGAACATGCTGCTGCGGGG AATAAGTTCCTTCTGAGCAACCAGAACATGCTGCTGCGGGG < 41bp 1 0.380436281547166 1 0.439347594976425 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154306671 chr1:154306661 nonsynonymous SNV 0.995 1 11 hm5C_associated_SNPs_36016 0 0 1 0 2 chromatin 1 0.50023164388666 1 0.999536712226679 hm5C_site_35669 DeepMRMD:1;iRNA_m5C:0.999536712226679 35670 chr15 25220525 25220525 1 + G A SKCM 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGTAGCAAAATGCTGCAGCACATTGACTATAGA < 41bp 1 0.672366593699279 1 0.61433881521225 experiment 0.655266812601441 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220525 synonymous SNV . 0 17 hm5C_associated_SNPs_36017 0 0 0 2 1 Cytosol 1 0.500238560576748 0.7713223695755 0.999522878846503 hm5C_site_35670 DeepMRMD:0.7713223695755;iRNA_m5C:0.999522878846503 35671 chr16 89261523 89261523 1 + C T SKCM 89261534 + 89261514 89261554 41 GTCTTTCTCCTGGGGCACTGCTACCCAGACACAGAGGCCGG GTCTTTCTCTTGGGGCACTGCTACCCAGACACAGAGGCCGG < 41bp 1 0.300148969249512 1 0.184833556413651 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDH15 ENSG00000129910 CDS Human protein_coding chr16:89261534 chr16:89261523 nonsynonymous SNV 0.001 1 10 hm5C_associated_SNPs_36018 0 0 0 0 0 nucleus 1 0.500231643921409 1 0.999536712157182 hm5C_site_35671 DeepMRMD:1;iRNA_m5C:0.999536712157182 35672 chr1 233514953 233514953 1 + C T SKCM 233514944 + 233514924 233514964 41 TGGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG TGGGTGCACCGTCCTTCTGGCATCGGTGGTTCTGGGACTGG < 41bp 1 0.250215780074915 1 0.0548083484172821 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233514944 chr1:233514953 nonsynonymous SNV 0.144 3 30 hm5C_associated_SNPs_36019 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157813 hm5C_site_35672 DeepMRMD:1;iRNA_m5C:0.999536712157813 35673 chrX 73046475 73046475 1 + G A SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCTTAAAC < 41bp 1 0.538741025057723 1 0.599575042724609 experiment 0.922517949884553 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046475 . . 0 36 hm5C_associated_SNPs_36020 0 0 1 11 0 unknown 1 0.500231643921092 0.800849914550782 0.999536712157815 hm5C_site_35673 DeepMRMD:0.800849914550782;iRNA_m5C:0.999536712157815 35674 chr5 176524640 176524640 1 + C T SKCM 176524624 + 176524604 176524644 41 ATTCTGTCTTCAGCCACGACCCCCTGCCATTGGGATCCAGC ATTCTGTCTTCAGCCACGACCCCCTGCCATTGGGATTCAGC < 41bp 1 0.118840041288268 1 0.0506351292133331 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524624 chr5:176524640 nonsynonymous SNV 0.080 2 37 hm5C_associated_SNPs_36021 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643706198 1 0.999536712587603 hm5C_site_35674 DeepMRMD:1;iRNA_m5C:0.999536712587603 35675 chr5 176524640 176524640 1 + C T SKCM 176524627 + 176524607 176524647 41 CTGTCTTCAGCCACGACCCCCTGCCATTGGGATCCAGCTCC CTGTCTTCAGCCACGACCCCCTGCCATTGGGATTCAGCTCC < 41bp 1 0.298354722505465 1 0.0423549115657806 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524627 chr5:176524640 nonsynonymous SNV 0.080 2 34 hm5C_associated_SNPs_36022 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643863774 1 0.999536712272452 hm5C_site_35675 DeepMRMD:1;iRNA_m5C:0.999536712272452 35676 chr11 119045960 119045960 1 + C T SKCM 119045961 + 119045941 119045981 41 GCTGCCTCTGCGGGCTCTGCCTCTGCTCTTCAACCTGATCA GCTGCCTCTGCGGGCTCTGTCTCTGCTCTTCAACCTGATCA < 41bp 1 0.407626234424338 1 0.739887356758118 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045961 chr11:119045960 nonsynonymous SNV 0.996 0 20 hm5C_associated_SNPs_36023 0 0 0 0 1 exosome 1 0.500231643915064 0.520225286483764 0.999536712169871 hm5C_site_35676 DeepMRMD:0.520225286483764;iRNA_m5C:0.999536712169871 35677 chrX 131202542 131202542 1 + G A SKCM 131202534 + 131202514 131202554 41 ACACAGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG ACACAGATTAAAAGAAATACCTTTGTGGAAACTCCATTTTG < 41bp 1 0.378970709231537 1 0.0231605768203735 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK26 ENSG00000134602 CDS Human protein_coding chrX:131202534 chrX:131202542 nonsynonymous SNV 0.995 4 29 hm5C_associated_SNPs_36024 0 0 1 0 1 Ribosome 1 0.500231626285615 1 0.99953674742877 hm5C_site_35677 DeepMRMD:1;iRNA_m5C:0.99953674742877 35678 chr1 28861653 28861653 1 + C T SKCM 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGTCTCA < 41bp 1 0.238395635765394 1 0.258401334285736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861653 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_36025 0 0 1 0 2 Ribosome 1 0.500231643921201 1 0.999536712157598 hm5C_site_35678 DeepMRMD:1;iRNA_m5C:0.999536712157598 35679 chr20 42341730 42341730 1 + C T SKCM 42341738 + 42341718 42341758 41 TGTCCACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTG TGTCCACACTGCTCAAGTCTCTATCCTTGGTAAGGCTTCTG < 41bp 1 0.0851824109103412 1 0.125099390745163 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341738 chr20:42341730 nonsynonymous SNV 0.666 3 13 hm5C_associated_SNPs_36026 0 0 1 0 2 Cytosol 1 0.500231643921087 1 0.999536712157826 hm5C_site_35679 DeepMRMD:1;iRNA_m5C:0.999536712157826 35680 chr20 42341730 42341730 1 + C T SKCM 42341742 + 42341722 42341762 41 CACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTGCTCC CACACTGCTCAAGTCTCTATCCTTGGTAAGGCTTCTGCTCC < 41bp 1 0.0777911590043202 1 0.0597805678844452 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341742 chr20:42341730 nonsynonymous SNV 0.666 3 9 hm5C_associated_SNPs_36027 0 0 1 0 2 Cytosol 1 0.500231644052749 1 0.999536711894501 hm5C_site_35680 DeepMRMD:1;iRNA_m5C:0.999536711894501 35681 chr3 58118625 58118625 1 + C T SKCM 58118613 + 58118593 58118633 41 CACCCCATCTCAGGAGGGACCTTACATGGTCTCAGTTAAAT CACCCCATCTCAGGAGGGACCTTACATGGTCTTAGTTAAAT < 41bp 1 0.0176469163403629 1 0.240211963653564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58118613 chr3:58118625 nonsynonymous SNV 0.996 2 33 hm5C_associated_SNPs_36028 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35681 DeepMRMD:1;iRNA_m5C:0.999536712157815 35682 chr3 184039162 184039162 1 + C T SKCM 184039163 + 184039143 184039183 41 CCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCAG CCAGCCTTCGTCGCCTTCTTCGACCCCATCACCATCCCCAG < 41bp 1 0.467158629049713 1 0.926319241523743 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039163 chr3:184039162 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_36029 0 0 1 0 1 Nucleus 1 0.500231643921092 0.147361516952514 0.999536712157815 hm5C_site_35682 DeepMRMD:0.147361516952514;iRNA_m5C:0.999536712157815 35683 chr9 101765820 101765820 1 + G A SKCM 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCGGGGAACCAACCCTCTCTATGTCCACGGAGAACCCAG < 41bp 1 0.258133049134397 1 0.0961710214614868 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765820 nonsynonymous SNV 0.002 3 9 hm5C_associated_SNPs_36032 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35683 DeepMRMD:1;iRNA_m5C:0.999536712157815 35684 chr7 6641744 6641744 1 + C T SKCM 6641737 + 6641717 6641757 41 TCTCCTTAATTGCAGATGACCTGAGAACCTTGTGCTCCAGG TCTCCTTAATTGCAGATGACCTGAGAATCTTGTGCTCCAGG < 41bp 1 0.29137341695646 1 0.204672515392303 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6641737 chr7:6641744 nonsynonymous SNV 0.996 2 28 hm5C_associated_SNPs_36033 0 0 1 0 2 chromatin 1 0.500231643878199 1 0.999536712243602 hm5C_site_35684 DeepMRMD:1;iRNA_m5C:0.999536712243602 35685 chr10 72324234 72324234 1 + G A SKCM 72324236 + 72324216 72324256 41 TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT TACCTCCACCTGGAGAAGACCGACTCCTGGCAGAGGCCCTT < 41bp 1 0.221036761232055 1 0.219574332237244 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72324236 chr10:72324234 nonsynonymous SNV 0.102 0 19 hm5C_associated_SNPs_36034 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35685 DeepMRMD:1;iRNA_m5C:0.999536712157815 35686 chrX 73043525 73043525 1 + C T SKCM 73043508 - 73043488 73043528 41 GAGGAGATGGAAAATTTTTGCAAAAAACAAGGTGTTGTGGT GAGAAGATGGAAAATTTTTGCAAAAAACAAGGTGTTGTGGT < 41bp 1 0.321739356854113 1 0.603963494300842 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043508 chrX:73043525 . . 0 4 hm5C_associated_SNPs_36035 0 0 1 1 0 unknown 1 0.500231645543882 0.792073011398316 0.999536708912236 hm5C_site_35686 DeepMRMD:0.792073011398316;iRNA_m5C:0.999536708912236 35687 chrX 73043525 73043525 1 + C T SKCM 73043534 - 73043514 73043554 41 GAAGATACATGCTTCCTGGCCTGATTGAGGAGATGGAAAAT GAAGATACATGCTTCCTGGCCTGATTGAGAAGATGGAAAAT < 41bp 1 0.102031945179315 1 0.17523866891861 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043534 chrX:73043525 . . 0 30 hm5C_associated_SNPs_36036 0 0 1 1 0 unknown 1 0.50023164391981 1 0.999536712160379 hm5C_site_35687 DeepMRMD:1;iRNA_m5C:0.999536712160379 35688 chr12 53663157 53663157 1 + C T SKCM 53663151 + 53663131 53663171 41 TGCTCCCCAGGACTATGAGGCCGTGGCTCGGGGCAGCTTTT TGCTCCCCAGGACTATGAGGCCGTGGTTCGGGGCAGCTTTT < 41bp 1 0.20060317583148 1 0.408236563205719 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663151 chr12:53663157 nonsynonymous SNV 0.476 0 27 hm5C_associated_SNPs_36037 0 0 1 0 0 Nucleus 1 0.500231643921122 1 0.999536712157755 hm5C_site_35688 DeepMRMD:1;iRNA_m5C:0.999536712157755 35689 chr12 6635479 6635479 1 + C T SKCM 6635482 + 6635462 6635502 41 GGCAAACGTCACCCCCCCTTCCGGCTGCCTCAGGAACACAG GGCAAACGTCACCCCCCTTTCCGGCTGCCTCAGGAACACAG < 41bp 1 0.41442143484074 1 0.647736430168152 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6635482 chr12:6635479 synonymous SNV . 0 18 hm5C_associated_SNPs_36038 0 0 1 0 2 Nucleus 1 0.500231643921092 0.704527139663696 0.999536712157815 hm5C_site_35689 DeepMRMD:0.704527139663696;iRNA_m5C:0.999536712157815 35690 chr11 61106811 61106811 1 + C T SKCM 61106796 + 61106776 61106816 41 GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATTCCGGT < 41bp 1 0.608778772412926 1 0.383724093437195 experiment 0.782442455174149 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106796 chr11:61106811 synonymous SNV . 0 36 hm5C_associated_SNPs_36039 0 0 1 0 2 Cytosol 1 0.500231645805694 1 0.999536708388612 hm5C_site_35690 DeepMRMD:1;iRNA_m5C:0.999536708388612 35691 chr19 42880627 42880627 1 + C T SKCM 42880609 + 42880589 42880629 41 CCCCTGCTGCTGACAGGGGCCGGTGGGCCCTGGGGACCCAT CCCCTGCTGCTGACAGGGGCCGGTGGGCCCTGGGGACCTAT < 41bp 1 0.232566115347251 1 0.735053777694702 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42880609 chr19:42880627 synonymous SNV . 0 39 hm5C_associated_SNPs_36041 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921277 0.529892444610596 0.999536712157447 hm5C_site_35691 DeepMRMD:0.529892444610596;iRNA_m5C:0.999536712157447 35692 chr19 10893725 10893725 1 + C T SKCM 10893721 + 10893701 10893741 41 CTGGCAGCTGAGAGGAAGTTCTTCCTCTCCCACCCGGCCTA CTGGCAGCTGAGAGGAAGTTCTTCTTCTCCCACCCGGCCTA < 41bp 1 0.250112220189328 1 0.0824697911739349 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10893721 chr19:10893725 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_36042 0 0 1 0 1 Nucleus 1 0.500231643919105 1 0.999536712161789 hm5C_site_35692 DeepMRMD:1;iRNA_m5C:0.999536712161789 35693 chr18 77457903 77457903 1 + G A SKCM 77457896 + 77457876 77457916 41 GAAGAGAAGACCAGCAGCGACTGCACCGAAACCGGAAGCTG GAAGAGAAGACCAGCAGCGACTGCACCAAAACCGGAAGCTG < 41bp 1 0.595638443669524 1 0.484692305326462 experiment 0.808723112660953 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77457896 chr18:77457903 nonsynonymous SNV 0.143 4 28 hm5C_associated_SNPs_36044 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35693 DeepMRMD:1;iRNA_m5C:0.999536712157815 35694 chr12 49724711 49724711 1 + C T SKCM 49724720 + 49724700 49724740 41 CTTTGAGACCCCCAGCAGGCCAGGCAGGTAAGGAGTTGGCT CTTTGAGACCCTCAGCAGGCCAGGCAGGTAAGGAGTTGGCT < 41bp 1 0.301346653098768 1 0.147789061069489 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TROAP ENSG00000135451 CDS Human protein_coding chr12:49724720 chr12:49724711 nonsynonymous SNV 0.005 0 12 hm5C_associated_SNPs_36045 0 0 1 0 1 Ribosome 1 0.500231644111074 1 0.999536711777851 hm5C_site_35694 DeepMRMD:1;iRNA_m5C:0.999536711777851 35695 chr11 2608837 2608837 1 + C T SKCM 2608838 + 2608818 2608858 41 GCTGCCGAGAACCCCGACTCCTCCACCTGGAAGATCTACAT GCTGCCGAGAACCCCGACTTCTCCACCTGGAAGATCTACAT < 41bp 1 0.68074073760646 1 0.945829153060913 experiment 0.638518524787079 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2608838 chr11:2608837 nonsynonymous SNV 0.790 3 20 hm5C_associated_SNPs_36046 0 0 0 0 2 Nucleus 1 0.500231736676654 0.108341693878174 0.999536526646692 hm5C_site_35695 DeepMRMD:0.108341693878174;iRNA_m5C:0.999536526646692 35696 chr2 189852856 189852856 1 + C T SKCM 189852859 + 189852839 189852879 41 ATCTGGTCATCCTGGTTCCCCTGTAAGTATAGCCATTGGTG ATCTGGTCATCCTGGTTTCCCTGTAAGTATAGCCATTGGTG < 41bp 1 0.439311511356293 1 0.417738318443298 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189852859 chr2:189852856 nonsynonymous SNV 0.932 1 18 hm5C_associated_SNPs_36047 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35696 DeepMRMD:1;iRNA_m5C:0.999536712157815 35697 chr9 131559401 131559401 1 + C T SKCM 131559385 + 131559365 131559405 41 AGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCA AGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACTCCCA < 41bp 1 0.0446653059265169 1 0.0512673556804657 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D13 ENSG00000107021 CDS Human protein_coding chr9:131559385 chr9:131559401 nonsynonymous SNV 0.984 1 37 hm5C_associated_SNPs_36048 0 0 1 0 2 Cytosol 1 0.500231644296563 1 0.999536711406875 hm5C_site_35697 DeepMRMD:1;iRNA_m5C:0.999536711406875 35698 chr19 6833264 6833264 1 + C T SKCM 6833263 + 6833243 6833283 41 GATGTTCTCCTTTGAGGAGACCACATCCTGCAAGGCCTGTC GATGTTCTCCTTTGAGGAGACTACATCCTGCAAGGCCTGTC < 41bp 1 0.68994784191913 1 0.519676446914673 experiment 0.620104316161739 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833263 chr19:6833264 synonymous SNV . 0 22 hm5C_associated_SNPs_36049 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.960647106170654 0.999536712157815 hm5C_site_35698 DeepMRMD:0.960647106170654;iRNA_m5C:0.999536712157815 35699 chr5 140573667 140573667 1 + C T SKCM 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTC < 41bp 1 0.176553288716457 1 0.0721878707408905 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573667 synonymous SNV . 0 30 hm5C_associated_SNPs_36050 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35699 DeepMRMD:1;iRNA_m5C:0.999536712157815 35700 chr19 35773543 35773543 1 + G A SKCM 35773554 + 35773534 35773574 41 CGCCAGCCTGACCAGTGGCTCTGTTTTCCCACAACAGGTGA CGCCAGCCTAACCAGTGGCTCTGTTTTCCCACAACAGGTGA < 41bp 1 0.32305050638708 1 0.0911121964454651 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HAMP ENSG00000105697 CDS Human protein_coding chr19:35773554 chr19:35773543 synonymous SNV . 0 10 hm5C_associated_SNPs_36051 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35700 DeepMRMD:1;iRNA_m5C:0.999536712157815 35701 chr3 142840921 142840921 1 + G A SKCM 142840907 + 142840887 142840927 41 TGCAGCCCCCTGACTGGCTGCAGGGCCACTACCTGGTGGTG TGCAGCCCCCTGACTGGCTGCAGGGCCACTACCTAGTGGTG < 41bp 1 0.508812307300073 1 0.724011898040771 experiment 0.982375385399854 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840907 chr3:142840921 synonymous SNV . 0 35 hm5C_associated_SNPs_36052 0 0 1 0 0 cytosol 1 0.500231643921093 0.551976203918458 0.999536712157815 hm5C_site_35701 DeepMRMD:0.551976203918458;iRNA_m5C:0.999536712157815 35702 chr4 79399106 79399106 1 + G A SKCM 79399112 + 79399092 79399132 41 GAATTCACCCAGGCGAAGGTCATTATCAACGATACCGAGGA GAATTCACCCAGGCAAAGGTCATTATCAACGATACCGAGGA < 41bp 1 0.0761154624219331 1 0.0596942007541656 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79399112 chr4:79399106 synonymous SNV . 0 15 hm5C_associated_SNPs_36053 0 0 0 0 0 Nucleus 1 0.500231706908051 1 0.999536586183898 hm5C_site_35702 DeepMRMD:1;iRNA_m5C:0.999536586183898 35703 chr22 41735888 41735888 1 + C T SKCM 41735900 + 41735880 41735920 41 CCCGTGTTCCCCGGCGGGACCCCACTGCTACCACCTGTGGT CCCGTGTTTCCCGGCGGGACCCCACTGCTACCACCTGTGGT < 41bp 1 0.0764734686513668 1 0.0619634985923767 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735900 chr22:41735888 synonymous SNV . 0 9 hm5C_associated_SNPs_36054 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35703 DeepMRMD:1;iRNA_m5C:0.999536712157815 35704 chr7 90355918 90355918 1 + G A SKCM 90355900 + 90355880 90355920 41 GATATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAA GATATGTGTCACAAAGATGTCTACACGGAACTGCCAGGAAA < 41bp 1 0.544891652687683 1 0.0789504945278168 experiment 0.910216694624634 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355900 chr7:90355918 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_36055 0 0 1 0 1 Nucleus 1 0.500231661878756 1 0.999536676242487 hm5C_site_35704 DeepMRMD:1;iRNA_m5C:0.999536676242487 35705 chr7 90355918 90355918 1 + G A SKCM 90355903 + 90355883 90355923 41 ATGTGTCACAAAGATGTCTACACGGAACTGCCAGGGAATGG ATGTGTCACAAAGATGTCTACACGGAACTGCCAGGAAATGG < 41bp 1 0.36868302943955 1 0.0779419243335724 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355903 chr7:90355918 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_36056 0 0 1 0 1 Nucleus 1 0.500231644003673 1 0.999536711992655 hm5C_site_35705 DeepMRMD:1;iRNA_m5C:0.999536711992655 35706 chr7 90355918 90355918 1 + G A SKCM 90355905 + 90355885 90355925 41 GTGTCACAAAGATGTCTACACGGAACTGCCAGGGAATGGAC GTGTCACAAAGATGTCTACACGGAACTGCCAGGAAATGGAC < 41bp 1 0.471947627027395 1 0.170041084289551 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK14 ENSG00000058091 CDS Human protein_coding chr7:90355905 chr7:90355918 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_36057 0 0 1 0 1 Nucleus 1 0.500231643925891 1 0.999536712148218 hm5C_site_35706 DeepMRMD:1;iRNA_m5C:0.999536712148218 35707 chr13 76395507 76395507 1 + G A SKCM 76395515 + 76395495 76395535 41 CTTTTGCAAAAAGAGAGGACCGTGTAACAACTGAAATTCAG CTTTTGCAAAAAAAGAGGACCGTGTAACAACTGAAATTCAG < 41bp 1 0.105994373650503 1 0.159868717193604 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76395515 chr13:76395507 nonsynonymous SNV 0.592 0 13 hm5C_associated_SNPs_36058 0 0 1 0 0 Cytosol 1 0.50023164403556 1 0.99953671192888 hm5C_site_35707 DeepMRMD:1;iRNA_m5C:0.99953671192888 35708 chr22 26422852 26422852 1 + G A SKCM 26422843 + 26422823 26422863 41 GGCAGTGACGAGGGAAACCTCTCGCTGAGGGTTGGGGCAAA GGCAGTGACGAGGGAAACCTCTCGCTGAGAGTTGGGGCAAA < 41bp 1 0.512626313065903 1 0.891849637031555 experiment 0.974747373868193 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26422843 chr22:26422852 synonymous SNV . 0 30 hm5C_associated_SNPs_36059 0 0 0 0 0 chromatin 1 0.500231643921092 0.21630072593689 0.999536712157815 hm5C_site_35708 DeepMRMD:0.21630072593689;iRNA_m5C:0.999536712157815 35709 chr11 126143269 126143269 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTTCGGTTCA < 41bp 1 0.507234930478368 1 0.0860559642314911 experiment 0.985530139043264 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143269 synonymous SNV . 0 34 hm5C_associated_SNPs_36060 0 0 1 6 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35709 DeepMRMD:1;iRNA_m5C:0.999536712157815 35710 chr12 56504387 56504387 1 + C T SKCM 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGAGAACCACTATTTACAAACGAGACCCTTCTAAACA < 41bp 1 0.32063902479897 1 0.158086866140366 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504387 synonymous SNV . 0 33 hm5C_associated_SNPs_36061 0 0 1 0 2 Ribosome 1 0.500231643921063 1 0.999536712157873 hm5C_site_35710 DeepMRMD:1;iRNA_m5C:0.999536712157873 35711 chr7 128478853 128478853 1 + G A SKCM 128478838 + 128478818 128478858 41 CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCAGAAGG < 41bp 1 0.0596246840750621 1 0.0370257198810577 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128478838 chr7:128478853 synonymous SNV . 0 36 hm5C_associated_SNPs_36062 0 0 1 0 1 chromatin 1 0.500231634911714 1 0.999536730176572 hm5C_site_35711 DeepMRMD:1;iRNA_m5C:0.999536730176572 35712 chr1 55457675 55457675 1 + G A SKCM 55457683 + 55457663 55457703 41 CCACCCAGCTATGAGAGCATCAGCCTTGCTCTTGATGCCGT CCACCCAGCTATAAGAGCATCAGCCTTGCTCTTGATGCCGT < 41bp 1 0.490999099972803 1 0.106716930866241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55457683 chr1:55457675 nonsynonymous SNV 0.775 4 13 hm5C_associated_SNPs_36063 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35712 DeepMRMD:1;iRNA_m5C:0.999536712157815 35713 chr19 58906062 58906062 1 + C T SKCM 58906069 + 58906049 58906089 41 GGCTCCTCGAACTCCTATGCCATTAAGAAGAAGGACGAGCT GGCTCCTCGAACTTCTATGCCATTAAGAAGAAGGACGAGCT < 41bp 1 0.217948717312637 1 0.0539397895336151 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906069 chr19:58906062 nonsynonymous SNV 0.998 3 14 hm5C_associated_SNPs_36064 0 0 1 0 1 Ribosome 1 0.500231643921177 1 0.999536712157646 hm5C_site_35713 DeepMRMD:1;iRNA_m5C:0.999536712157646 35714 chr19 1037846 1037846 1 + C T SKCM 1037857 + 1037837 1037877 41 TGCCCGGACCCGGGGGAGGTCCCTGAATATCCCCCTTACTA TGCCCGGACTCGGGGGAGGTCCCTGAATATCCCCCTTACTA < 41bp 1 0.278730695900514 1 0.257178008556366 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037857 chr19:1037846 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_36066 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35714 DeepMRMD:1;iRNA_m5C:0.999536712157815 35715 chr20 57478841 57478841 1 + C T SKCM 57478822 + 57478802 57478842 41 TACATCCTGAGTGTGATGAACGTGCCTGACTTTGACTTCCC TACATCCTGAGTGTGATGAACGTGCCTGACTTTGACTTCTC < 41bp 1 0.254032385180383 1 0.0473552346229553 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478822 chr20:57478841 nonsynonymous SNV 0.998 2 40 hm5C_associated_SNPs_36067 0 0 1 2 1 Cytosol 1 0.500231644007588 1 0.999536711984824 hm5C_site_35715 DeepMRMD:1;iRNA_m5C:0.999536711984824 35716 chr20 57478841 57478841 1 + C T SKCM 57478840 + 57478820 57478860 41 AACGTGCCTGACTTTGACTTCCCTCCCGTAAGCTACACCCC AACGTGCCTGACTTTGACTTCTCTCCCGTAAGCTACACCCC < 41bp 1 0.141968773471262 1 0.116267085075378 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57478840 chr20:57478841 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_36068 0 0 1 2 1 Cytosol 1 0.500231643921136 1 0.999536712157728 hm5C_site_35716 DeepMRMD:1;iRNA_m5C:0.999536712157728 35717 chr14 20943236 20943236 1 + C T SKCM 20943217 + 20943197 20943237 41 GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTCC GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTTC < 41bp 1 0.502913606404595 1 0.217008173465729 experiment 0.994172787190809 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 CDS Human protein_coding chr14:20943217 chr14:20943236 synonymous SNV . 0 40 hm5C_associated_SNPs_36069 0 0 1 0 1 Ribosome 1 0.500231643920992 1 0.999536712158016 hm5C_site_35717 DeepMRMD:1;iRNA_m5C:0.999536712158016 35718 chr3 130712923 130712923 1 + G A SKCM 130712932 + 130712912 130712952 41 TCCTAGTGGATGATGATTTTCAAACCATAATGTAAGCTTTG TCCTAGTGGATAATGATTTTCAAACCATAATGTAAGCTTTG < 41bp 1 0.246946610446781 1 0.285438567399979 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130712932 chr3:130712923 nonsynonymous SNV 0.993 5 12 hm5C_associated_SNPs_36070 0 0 1 0 1 Ribosome 1 0.500231643131933 1 0.999536713736134 hm5C_site_35718 DeepMRMD:1;iRNA_m5C:0.999536713736134 35719 chr16 16230351 16230351 1 + C T SKCM 16230338 + 16230318 16230358 41 CTCTTCTCTCTGAACAGGACCCTGTTTTGTTTTCGGGTTCC CTCTTCTCTCTGAACAGGACCCTGTTTTGTTTTTGGGTTCC < 41bp 1 0.0381943788868918 1 0.0702213048934937 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16230338 chr16:16230351 nonsynonymous SNV 0.992 5 34 hm5C_associated_SNPs_36071 0 0 0 0 1 Mitochondrion 1 0.50023164392281 1 0.99953671215438 hm5C_site_35719 DeepMRMD:1;iRNA_m5C:0.99953671215438 35720 chr20 43052675 43052675 1 + G A SKCM 43052674 + 43052654 43052694 41 GTAGATGCCAAGGGGCTGAGCGATCCAGGGAAGATCAAGCG GTAGATGCCAAGGGGCTGAGCAATCCAGGGAAGATCAAGCG < 41bp 1 0.12363759056106 1 0.286897897720337 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNF4A ENSG00000101076 CDS Human protein_coding chr20:43052674 chr20:43052675 nonsynonymous SNV 0.925 2 22 hm5C_associated_SNPs_36072 1 0 1 0 1 Ribosome 1 0.500231679279274 1 0.999536641441453 hm5C_site_35720 DeepMRMD:1;iRNA_m5C:0.999536641441453 Monogenic diabetes Monogenic diabetes 35721 chr13 93879776 93879776 1 + G A SKCM 93879771 + 93879751 93879791 41 GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTC GCTGCTGCTCTCCCTCCCCGCCGGGACGGATGTGAAGGCTC < 41bp 1 0.534685901414008 1 0.861261188983917 experiment 0.930628197171985 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879771 chr13:93879776 nonsynonymous SNV 0.997 0 26 hm5C_associated_SNPs_36073 0 0 1 0 1 Ribosome 1 0.500231643858651 0.277477622032166 0.999536712282698 hm5C_site_35721 DeepMRMD:0.277477622032166;iRNA_m5C:0.999536712282698 35722 chr14 93125795 93125795 1 + C T SKCM 93125812 + 93125792 93125832 41 CTCCATGGCCCTCGGCAACCCAGGTCAGTGGGCAGCCGGGA CTCTATGGCCCTCGGCAACCCAGGTCAGTGGGCAGCCGGGA < 41bp 1 0.538286219671952 1 0.517688989639282 experiment 0.923427560656096 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93125812 chr14:93125795 synonymous SNV . 0 4 hm5C_associated_SNPs_36074 0 0 0 0 1 cytosol 1 0.500231311434218 0.964622020721436 0.999537377131564 hm5C_site_35722 DeepMRMD:0.964622020721436;iRNA_m5C:0.999537377131564 35723 chr20 44673674 44673674 1 + C T SKCM 44673677 + 44673657 44673697 41 TCTCCATGGGTAATTGTCATCGGATCCTTCTTCTCCACCTG TCTCCATGGGTAATTGTTATCGGATCCTTCTTCTCCACCTG < 41bp 1 0.656210788375948 1 0.77141261100769 experiment 0.687578423248104 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44673677 chr20:44673674 synonymous SNV . 0 18 hm5C_associated_SNPs_36075 0 0 0 0 1 cytosol 1 0.500231643921092 0.45717477798462 0.999536712157815 hm5C_site_35723 DeepMRMD:0.45717477798462;iRNA_m5C:0.999536712157815 35724 chr20 60348221 60348221 1 + C T SKCM 60348215 + 60348195 60348235 41 TGCCCGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTG TGCCCGAGAACTCGCGCGGGCCCTTCTCGCAGCAGCTCGTG < 41bp 1 0.0604845663089374 1 0.0165118873119354 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348215 chr20:60348221 nonsynonymous SNV 0.788 4 27 hm5C_associated_SNPs_36076 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_35724 DeepMRMD:1;iRNA_m5C:0.999536712157814 35725 chr20 60348221 60348221 1 + C T SKCM 60348217 + 60348197 60348237 41 CCCGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTGAG CCCGAGAACTCGCGCGGGCCCTTCTCGCAGCAGCTCGTGAG < 41bp 1 0.214679706546826 1 0.020440399646759 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348217 chr20:60348221 nonsynonymous SNV 0.788 4 25 hm5C_associated_SNPs_36077 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35725 DeepMRMD:1;iRNA_m5C:0.999536712157815 35726 chr16 28843514 28843514 1 + C T SKCM 28843531 + 28843511 28843551 41 CCCCTTTTCTTCCAGTGGGCCGGATGTATCCCCCGCGTTCT CCCTTTTTCTTCCAGTGGGCCGGATGTATCCCCCGCGTTCT < 41bp 1 0.361200767058033 1 0.362997561693192 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28843531 chr16:28843514 nonsynonymous SNV 0.961 1 4 hm5C_associated_SNPs_36078 0 0 1 0 1 Cytosol 1 0.500231643923271 1 0.999536712153457 hm5C_site_35726 DeepMRMD:1;iRNA_m5C:0.999536712153457 35727 chr1 40922631 40922631 1 + C T SKCM 40922642 + 40922622 40922662 41 GTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGG GTTAACCTTTAAGGACGTATCTGTGGACTTCACTCAGGAGG < 41bp 1 0.675348351213998 1 0.738748133182526 experiment 0.649303297572003 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZFP69B ENSG00000187801 CDS Human protein_coding chr1:40922642 chr1:40922631 stopgain 0.998 0 10 hm5C_associated_SNPs_36079 0 0 0 0 1 Nucleus 1 0.500231646953851 0.522503733634948 0.999536706092299 hm5C_site_35727 DeepMRMD:0.522503733634948;iRNA_m5C:0.999536706092299 35728 chr8 98837319 98837319 1 + C T SKCM 98837312 + 98837292 98837332 41 TTGATTAGCTGTGTTTGGAACTGCTACCGATACATCAATGG TTGATTAGCTGTGTTTGGAACTGCTACTGATACATCAATGG < 41bp 1 0.224674186508912 1 0.112635493278503 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAPTM4B ENSG00000104341 CDS Human protein_coding chr8:98837312 chr8:98837319 stopgain 0.983 1 28 hm5C_associated_SNPs_36080 0 0 1 0 1 Ribosome 1 0.500231643520698 1 0.999536712958604 hm5C_site_35728 DeepMRMD:1;iRNA_m5C:0.999536712958604 35729 chr9 132623221 132623221 1 + C T SKCM 132623233 + 132623213 132623253 41 CAGGACTCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC CAGGACTCTCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC < 41bp 1 0.0225360886457839 1 0.215178996324539 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132623233 chr9:132623221 synonymous SNV . 0 9 hm5C_associated_SNPs_36081 0 0 0 0 2 chromatin 1 0.500231643920565 1 0.999536712158869 hm5C_site_35729 DeepMRMD:1;iRNA_m5C:0.999536712158869 35730 chr7 101188637 101188637 1 + G A SKCM 101188639 + 101188619 101188659 41 GGCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAG GGCTCCTGGGGCCTCCAGAGCCCCGTGGGCTTCCTGGAGAG < 41bp 1 0.382879089972761 1 0.469474524259567 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188639 chr7:101188637 nonsynonymous SNV 0.952 4 19 hm5C_associated_SNPs_36082 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35730 DeepMRMD:1;iRNA_m5C:0.999536712157815 35731 chr7 101188637 101188637 1 + G A SKCM 101188640 + 101188620 101188660 41 GCTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGA GCTCCTGGGGCCTCCAGAGCCCCGTGGGCTTCCTGGAGAGA < 41bp 1 0.420534855714858 1 0.207525700330734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188640 chr7:101188637 nonsynonymous SNV 0.952 4 18 hm5C_associated_SNPs_36083 0 0 0 0 1 exosome 1 0.500231643921062 1 0.999536712157877 hm5C_site_35731 DeepMRMD:1;iRNA_m5C:0.999536712157877 35732 chr7 101188637 101188637 1 + G A SKCM 101188641 + 101188621 101188661 41 CTCCTGGGGCCTCCAGGGCCCCGTGGGCTTCCTGGAGAGAT CTCCTGGGGCCTCCAGAGCCCCGTGGGCTTCCTGGAGAGAT < 41bp 1 0.24199671775625 1 0.400004178285599 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188641 chr7:101188637 nonsynonymous SNV 0.952 4 17 hm5C_associated_SNPs_36084 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_35732 DeepMRMD:1;iRNA_m5C:0.999536712157814 35733 chr9 21859391 21859391 1 + C T SKCM 21859402 + 21859382 21859422 41 GATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGA GATAGGGTCTACAGAATGGTCAGAAACCCTCCATAACCTGA < 41bp 1 0.669768469653769 1 0.473857343196869 experiment 0.660463060692463 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859402 chr9:21859391 synonymous SNV . 0 10 hm5C_associated_SNPs_36085 0 0 1 0 2 Ribosome 1 0.500231825127879 1 0.999536349744241 hm5C_site_35733 DeepMRMD:1;iRNA_m5C:0.999536349744241 35734 chr1 220267642 220267642 1 + C T SKCM 220267629 + 220267609 220267649 41 TGCCCGAAGTTTGTGGGGGACGCCCCGCCTTCCCTGCAGCC TGCCCGAAGTTTGTGGGGGACGCCCCGCCTTCCTTGCAGCC < 41bp 1 0.46049229334895 1 0.264870494604111 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control IARS2 ENSG00000067704 CDS Human protein_coding chr1:220267629 chr1:220267642 synonymous SNV . 0 34 hm5C_associated_SNPs_36086 0 0 1 0 0 Ribosome 1 0.500231643920922 1 0.999536712158156 hm5C_site_35734 DeepMRMD:1;iRNA_m5C:0.999536712158156 35735 chr14 20943237 20943237 1 + C T SKCM 20943217 + 20943197 20943237 41 GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTCC GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTCT < 41bp 1 0.462955915662188 1 0.181975454092026 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 CDS Human protein_coding chr14:20943217 chr14:20943237 nonsynonymous SNV 0.997 5 41 hm5C_associated_SNPs_36087 0 0 1 0 1 Ribosome 1 0.500231641569501 1 0.999536716860999 hm5C_site_35735 DeepMRMD:1;iRNA_m5C:0.999536716860999 35736 chr14 21464991 21464991 1 + C T SKCM 21464984 + 21464964 21465004 41 GTGTCAGCTCCTGGGGAGATCTTTTACCTGTGCTTACTCCG GTGTCAGCTCCTGGGGAGATCTTTTACTTGTGCTTACTCCG < 41bp 1 0.148635003665695 1 0.38956406712532 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464984 chr14:21464991 nonsynonymous SNV 0.960 3 28 hm5C_associated_SNPs_36088 0 0 1 0 2 Ribosome 1 0.500231643922522 1 0.999536712154957 hm5C_site_35736 DeepMRMD:1;iRNA_m5C:0.999536712154957 35737 chr9 133507337 133507337 1 + C T SKCM 133507332 + 133507312 133507352 41 CTTTTACCTTTTCCCAGTACCTTTCCTCCAAGGAGCTCCGG CTTTTACCTTTTCCCAGTACCTTTCTTCCAAGGAGCTCCGG < 41bp 1 0.0767891630575099 1 0.0187589228153229 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507332 chr9:133507337 nonsynonymous SNV 0.599 1 26 hm5C_associated_SNPs_36089 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35737 DeepMRMD:1;iRNA_m5C:0.999536712157815 35738 chr6 138202199 138202199 1 + C T SKCM 138202184 + 138202164 138202204 41 CCACTCAGAGATCGAGCCAGCGCAGAGATGTGCCTCGAACC CCACTCAGAGATCGAGCCAGCGCAGAGATGTGCCTTGAACC < 41bp 1 0.315866489672733 1 0.520382225513458 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138202184 chr6:138202199 stopgain 0.756 0 36 hm5C_associated_SNPs_36090 0 0 1 0 1 Cytosol 1 0.500231643922525 0.959235548973084 0.99953671215495 hm5C_site_35738 DeepMRMD:0.959235548973084;iRNA_m5C:0.99953671215495 35739 chr1 22332005 22332005 1 + C T SKCM 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACGTGTGGCGGTAGCCTCATCGCCCCTGATTGGGT < 41bp 1 0.320707381042717 1 0.114874571561813 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22332005 synonymous SNV . 0 33 hm5C_associated_SNPs_36092 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643916013 1 0.999536712167973 hm5C_site_35739 DeepMRMD:1;iRNA_m5C:0.999536712167973 35740 chr1 22332005 22332005 1 + C T SKCM 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACGTGTGGCGGTAGCCTCATCGCCCCTGATTGGGTT < 41bp 1 0.601591680935536 1 0.330029726028442 experiment 0.796816638128927 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22332005 synonymous SNV . 0 32 hm5C_associated_SNPs_36093 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643936211 1 0.999536712127578 hm5C_site_35740 DeepMRMD:1;iRNA_m5C:0.999536712127578 35741 chr1 22332005 22332005 1 + C T SKCM 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACGTGTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGT < 41bp 1 0.334158061678512 1 0.438875615596771 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22332005 synonymous SNV . 0 30 hm5C_associated_SNPs_36094 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920537 1 0.999536712158927 hm5C_site_35741 DeepMRMD:1;iRNA_m5C:0.999536712158927 35742 chr1 22332005 22332005 1 + C T SKCM 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACGTGTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGAC < 41bp 1 0.554483062602113 1 0.437813073396683 experiment 0.891033874795773 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22332005 synonymous SNV . 0 27 hm5C_associated_SNPs_36095 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921063 1 0.999536712157873 hm5C_site_35742 DeepMRMD:1;iRNA_m5C:0.999536712157873 35743 chr1 22332005 22332005 1 + C T SKCM 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG GTGTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTG < 41bp 1 0.504380418993729 1 0.262170553207397 experiment 0.991239162012541 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22332005 synonymous SNV . 0 25 hm5C_associated_SNPs_36096 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921234 1 0.999536712157532 hm5C_site_35743 DeepMRMD:1;iRNA_m5C:0.999536712157532 35744 chr1 22332005 22332005 1 + C T SKCM 22332002 + 22331982 22332022 41 TGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGC TGTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTGC < 41bp 1 0.358907268584962 1 0.70002019405365 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332002 chr1:22332005 synonymous SNV . 0 24 hm5C_associated_SNPs_36097 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643904119 0.5999596118927 0.999536712191762 hm5C_site_35744 DeepMRMD:0.5999596118927;iRNA_m5C:0.999536712191762 35745 chr1 22332005 22332005 1 + C T SKCM 22332003 + 22331983 22332023 41 GTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCC GTGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTGCC < 41bp 1 0.495363161820646 1 0.107226878404617 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332003 chr1:22332005 synonymous SNV . 0 23 hm5C_associated_SNPs_36098 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35745 DeepMRMD:1;iRNA_m5C:0.999536712157815 35746 chr1 22332005 22332005 1 + C T SKCM 22332004 + 22331984 22332024 41 TGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCG TGGCGGTAGCCTCATCGCCCCTGATTGGGTTGTGACTGCCG < 41bp 1 0.377847937845155 1 0.0474604070186615 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332004 chr1:22332005 synonymous SNV . 0 22 hm5C_associated_SNPs_36099 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643439727 1 0.999536713120545 hm5C_site_35746 DeepMRMD:1;iRNA_m5C:0.999536713120545 35747 chr1 22332005 22332005 1 + C T SKCM 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT CGCCCCTGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT < 41bp 1 0.606071708331469 1 0.359561204910278 experiment 0.787856583337062 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22332005 synonymous SNV . 0 7 hm5C_associated_SNPs_36100 0 0 0 0 2 Endoplasmic reticulum 1 0.500231674940465 1 0.999536650119069 hm5C_site_35747 DeepMRMD:1;iRNA_m5C:0.999536650119069 35748 chr1 22332005 22332005 1 + C T SKCM 22332022 + 22332002 22332042 41 CCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAG CCCTGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAG < 41bp 1 0.432853151580931 1 0.5584357380867 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332022 chr1:22332005 synonymous SNV . 0 4 hm5C_associated_SNPs_36101 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643572358 0.8831285238266 0.999536712855285 hm5C_site_35748 DeepMRMD:0.8831285238266;iRNA_m5C:0.999536712855285 35749 chr1 22332005 22332005 1 + C T SKCM 22332023 + 22332003 22332043 41 CCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGT CCTGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGT < 41bp 1 0.52772340332787 1 0.366116017103195 experiment 0.944553193344261 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332023 chr1:22332005 synonymous SNV . 0 3 hm5C_associated_SNPs_36102 0 0 0 0 2 Endoplasmic reticulum 1 0.500231398575274 1 0.999537202849452 hm5C_site_35749 DeepMRMD:1;iRNA_m5C:0.999537202849452 35750 chr11 66062685 66062685 1 + C T SKCM 66062700 + 66062680 66062720 41 CAGCTCGCCCCCGCCGGGGGCCGTGCCCAGCGGGCCCCCGC CAGCTTGCCCCCGCCGGGGGCCGTGCCCAGCGGGCCCCCGC < 41bp 1 0.292879842367189 1 0.22645428776741 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66062700 chr11:66062685 nonsynonymous SNV 0.867 0 6 hm5C_associated_SNPs_36103 0 0 0 0 0 exosome 1 0.500231643921958 1 0.999536712156083 hm5C_site_35750 DeepMRMD:1;iRNA_m5C:0.999536712156083 35751 chr11 66062685 66062685 1 + C T SKCM 66062701 + 66062681 66062721 41 AGCTCGCCCCCGCCGGGGGCCGTGCCCAGCGGGCCCCCGCT AGCTTGCCCCCGCCGGGGGCCGTGCCCAGCGGGCCCCCGCT < 41bp 1 0.284004148057407 1 0.379970401525497 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66062701 chr11:66062685 nonsynonymous SNV 0.867 0 5 hm5C_associated_SNPs_36104 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_35751 DeepMRMD:1;iRNA_m5C:0.999536712157815 35752 chr9 93624558 93624558 1 + C T SKCM 93624554 + 93624534 93624574 41 CACGAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA CACGAAGGGAAGGTGCTGCACTATTGCATCGACAAAGACAA < 41bp 1 0.245113446386079 1 0.0466794669628143 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624554 chr9:93624558 nonsynonymous SNV 0.968 5 25 hm5C_associated_SNPs_36105 0 0 0 1 2 Cytosol 1 0.500231686364369 1 0.999536627271262 hm5C_site_35752 DeepMRMD:1;iRNA_m5C:0.999536627271262 35753 chr1 10231363 10231363 1 + C T SKCM 10231351 + 10231331 10231371 41 GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGC GATATTTACTTACAGCTGGACTGTGCTCGGTTTGCGAAAGC < 41bp 1 0.227088368555235 1 0.105401813983917 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10231351 chr1:10231363 synonymous SNV . 0 33 hm5C_associated_SNPs_36106 0 0 1 0 1 Cytosol 1 0.500252366478531 1 0.999495267042938 hm5C_site_35753 DeepMRMD:1;iRNA_m5C:0.999495267042938 35754 chr1 79128395 79128395 1 + G A SKCM 79128401 + 79128381 79128421 41 TATTGCAGCTAGAGGAAGTCCAAAGAAAACTTGGATTTGCT TATTGCAGCTAGAGAAAGTCCAAAGAAAACTTGGATTTGCT < 41bp 1 0.353813199143749 1 0.401466280221939 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IFI44 ENSG00000137965 CDS Human protein_coding chr1:79128401 chr1:79128395 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_36107 0 0 0 0 1 exosome 1 0.500231629471832 1 0.999536741056337 hm5C_site_35754 DeepMRMD:1;iRNA_m5C:0.999536741056337 35755 chr16 55523612 55523612 1 + C T SKCM 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC AAGGTGCCCCCTGTGTCTTCCCTTTCACTTTCCTGGGCAAC < 41bp 1 0.0122568404273436 1 0.0844337344169617 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523612 synonymous SNV . 0 23 hm5C_associated_SNPs_36108 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35755 DeepMRMD:1;iRNA_m5C:0.999536712157815 35756 chr14 105180799 105180799 1 + C T SKCM 105180779 + 105180759 105180799 41 CCACTGAGGATCCCCAGTGCCCCCAGCCCTTGGAGGGGGCC CCACTGAGGATCCCCAGTGCCCCCAGCCCTTGGAGGGGGCT < 41bp 1 0.198542944257431 1 0.326882481575012 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105180779 chr14:105180799 synonymous SNV . 0 41 hm5C_associated_SNPs_36109 0 0 1 0 0 Cytosol 1 0.500231643921156 1 0.999536712157688 hm5C_site_35756 DeepMRMD:1;iRNA_m5C:0.999536712157688 35757 chr14 105180799 105180799 1 + C T SKCM 105180780 + 105180760 105180800 41 CACTGAGGATCCCCAGTGCCCCCAGCCCTTGGAGGGGGCCT CACTGAGGATCCCCAGTGCCCCCAGCCCTTGGAGGGGGCTT < 41bp 1 0.187552161944849 1 0.0781185925006866 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105180780 chr14:105180799 synonymous SNV . 0 40 hm5C_associated_SNPs_36110 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35757 DeepMRMD:1;iRNA_m5C:0.999536712157815 35758 chr14 105180799 105180799 1 + C T SKCM 105180781 + 105180761 105180801 41 ACTGAGGATCCCCAGTGCCCCCAGCCCTTGGAGGGGGCCTG ACTGAGGATCCCCAGTGCCCCCAGCCCTTGGAGGGGGCTTG < 41bp 1 0.130051052848977 1 0.312680065631866 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105180781 chr14:105180799 synonymous SNV . 0 39 hm5C_associated_SNPs_36111 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_35758 DeepMRMD:1;iRNA_m5C:0.999536712157815 35759 chr14 105180799 105180799 1 + C T SKCM 105180782 + 105180762 105180802 41 CTGAGGATCCCCAGTGCCCCCAGCCCTTGGAGGGGGCCTGG CTGAGGATCCCCAGTGCCCCCAGCCCTTGGAGGGGGCTTGG < 41bp 1 0.359238675511699 1 0.375870227813721 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105180782 chr14:105180799 synonymous SNV . 0 38 hm5C_associated_SNPs_36112 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35759 DeepMRMD:1;iRNA_m5C:0.999536712157815 35760 chr14 105180799 105180799 1 + C T SKCM 105180798 + 105180778 105180818 41 CCCCCAGCCCTTGGAGGGGGCCTGGCCGGTGACTCTGGGAG CCCCCAGCCCTTGGAGGGGGCTTGGCCGGTGACTCTGGGAG < 41bp 1 0.22403550849094 1 0.242397427558899 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105180798 chr14:105180799 synonymous SNV . 0 22 hm5C_associated_SNPs_36113 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35760 DeepMRMD:1;iRNA_m5C:0.999536712157815 35761 chr14 104642755 104642755 1 + C T SKCM 104642772 + 104642752 104642792 41 CCTCCCCCGGAAACCGAGGACTGCCTCTGCCACCACCCGTG CCTTCCCCGGAAACCGAGGACTGCCTCTGCCACCACCCGTG < 41bp 1 0.20504653461151 1 0.0515042543411255 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642772 chr14:104642755 synonymous SNV . 0 4 hm5C_associated_SNPs_36114 0 0 1 0 0 Ribosome 1 0.500237802956604 1 0.999524394086792 hm5C_site_35761 DeepMRMD:1;iRNA_m5C:0.999524394086792 35762 chr1 44019227 44019227 1 + C T SKCM 44019220 + 44019200 44019240 41 TGGGCTGTCAGGAGGGGTAGCCTCCTTCGTGTGCCAAGCTA TGGGCTGTCAGGAGGGGTAGCCTCCTTTGTGTGCCAAGCTA < 41bp 1 0.0319929291089607 1 0.135940104722977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44019220 chr1:44019227 synonymous SNV . 0 28 hm5C_associated_SNPs_36115 0 0 1 0 2 Ribosome 1 0.500231643921197 1 0.999536712157606 hm5C_site_35762 DeepMRMD:1;iRNA_m5C:0.999536712157606 35763 chr1 44087626 44087626 1 + C T SKCM 44087609 + 44087589 44087629 41 GCCCCCTATCCTGGCAGGACCAGTATCAGCTGTGCTACCGT GCCCCCTATCCTGGCAGGACCAGTATCAGCTGTGCTATCGT < 41bp 1 0.313140152007546 1 0.318939030170441 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44087609 chr1:44087626 synonymous SNV . 0 38 hm5C_associated_SNPs_36116 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35763 DeepMRMD:1;iRNA_m5C:0.999536712157815 35764 chrX 107868959 107868959 1 + C T SKCM 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCTTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT < 41bp 1 0.165215417299077 1 0.0386524498462677 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868959 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_36117 0 0 0 0 2 Ribosome 1 0.500231643921132 1 0.999536712157737 hm5C_site_35764 DeepMRMD:1;iRNA_m5C:0.999536712157737 35765 chr12 57597283 57597283 1 + G A SKCM 57597276 + 57597256 57597296 41 GACGCCGACTGCATGGACGGCAGCGACGAGGAGGCCTGCGG GACGCCGACTGCATGGACGGCAGCGACAAGGAGGCCTGCGG < 41bp 1 0.20264922474338 1 0.326977103948593 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57597276 chr12:57597283 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_36118 0 0 1 0 1 Exosome 1 0.500231644366947 1 0.999536711266107 hm5C_site_35765 DeepMRMD:1;iRNA_m5C:0.999536711266107 35766 chr3 142741799 142741799 1 + C T SKCM 142741800 + 142741780 142741820 41 TATGATGGAACATACGCTTCCCCCACCTCCATCCGGACTGC TATGATGGAACATACGCTTTCCCCACCTCCATCCGGACTGC < 41bp 1 0.632422709867851 1 0.0394450128078461 experiment 0.735154580264298 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142741800 chr3:142741799 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_36119 0 0 1 0 0 Cytosol 1 0.500231643921203 1 0.999536712157594 hm5C_site_35766 DeepMRMD:1;iRNA_m5C:0.999536712157594 35767 chr12 124239059 124239059 1 + C T SKCM 124239064 + 124239044 124239084 41 CTCCTACCTGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC CTCCTACCTGAGGCTTTGGGCGCTTAGCCTGGCTCACGCAC < 41bp 1 0.289347452606172 1 0.243267148733139 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239064 chr12:124239059 synonymous SNV . 0 16 hm5C_associated_SNPs_36120 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921001 1 0.999536712157998 hm5C_site_35767 DeepMRMD:1;iRNA_m5C:0.999536712157998 35768 chr19 41040073 41040073 1 + G A SKCM 41040069 + 41040049 41040089 41 CGAGATCCGCCAGTGCTGGGCGGAGCTGGAGAGCACCACCC CGAGATCCGCCAGTGCTGGGCGGAACTGGAGAGCACCACCC < 41bp 1 0.589416351834165 1 0.673960328102112 experiment 0.821167296331669 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41040069 chr19:41040073 synonymous SNV . 0 25 hm5C_associated_SNPs_36121 0 0 0 0 1 cytosol 1 0.500231643921092 0.652079343795776 0.999536712157815 hm5C_site_35768 DeepMRMD:0.652079343795776;iRNA_m5C:0.999536712157815 35769 chr22 39125543 39125543 1 + C T SKCM 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCGACGAAAAAGGGCCTCCTGACGAAACGAGACGA < 41bp 1 0.0155222777855464 1 0.125802218914032 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125543 nonsynonymous SNV 0.658 2 23 hm5C_associated_SNPs_36122 0 0 1 0 1 Ribosome 1 0.500231643921123 1 0.999536712157755 hm5C_site_35769 DeepMRMD:1;iRNA_m5C:0.999536712157755 35770 chr22 39125543 39125543 1 + C T SKCM 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCGACGAAAAAGGGCCTCCTGACGAAACGAGACGAG < 41bp 1 0.155851247686304 1 0.454247385263443 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125543 nonsynonymous SNV 0.658 2 22 hm5C_associated_SNPs_36123 0 0 1 0 1 Ribosome 1 0.500226323643758 1 0.999547352712483 hm5C_site_35770 DeepMRMD:1;iRNA_m5C:0.999547352712483 35771 chr22 39125543 39125543 1 + C T SKCM 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCGACGAAAAAGGGCCTCCTGACGAAACGAGACGAGGG < 41bp 1 0.113942113505898 1 0.210402250289917 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125543 nonsynonymous SNV 0.658 2 20 hm5C_associated_SNPs_36124 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_35771 DeepMRMD:1;iRNA_m5C:0.999536712157812 35772 chr22 39125543 39125543 1 + C T SKCM 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCGACGAAAAAGGGCCTCCTGACGAAACGAGACGAGGGG < 41bp 1 0.155812327186124 1 0.380479633808136 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125543 nonsynonymous SNV 0.658 2 19 hm5C_associated_SNPs_36125 0 0 1 0 1 Ribosome 1 0.500231643921112 1 0.999536712157776 hm5C_site_35772 DeepMRMD:1;iRNA_m5C:0.999536712157776 35773 chr15 67073660 67073660 1 + C T SKCM 67073651 + 67073631 67073671 41 CTGGACGCGCCCGGCGGCCGCGCCCTGGTCGTGCGCAAGGT CTGGACGCGCCCGGCGGCCGCGCCCTGGTTGTGCGCAAGGT < 41bp 1 0.425212926160014 1 0.419275760650635 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SMAD6 ENSG00000137834 CDS Human protein_coding chr15:67073651 chr15:67073660 synonymous SNV . 0 30 hm5C_associated_SNPs_36126 0 0 1 0 0 Cytosol 1 0.500231643912126 1 0.999536712175749 hm5C_site_35773 DeepMRMD:1;iRNA_m5C:0.999536712175749 35774 chr2 233704569 233704569 1 + C T SKCM 233704582 + 233704562 233704602 41 CCTTCTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGC CCTTCTTTTTCAACGTGGGGCCAGCAGTCCAATACAACAGC < 41bp 1 0.0624961639178427 1 0.26029908657074 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704582 chr2:233704569 nonsynonymous SNV 0.998 3 8 hm5C_associated_SNPs_36127 0 0 1 0 1 Nucleus 1 0.500231644235397 1 0.999536711529207 hm5C_site_35774 DeepMRMD:1;iRNA_m5C:0.999536711529207 35775 chr2 233704569 233704569 1 + C T SKCM 233704586 + 233704566 233704606 41 CTTCTTCAACGTGGGGCCAGCAGTCCAATACAACAGCATGT CTTTTTCAACGTGGGGCCAGCAGTCCAATACAACAGCATGT < 41bp 1 0.103963295383585 1 0.592305123806 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233704586 chr2:233704569 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_36128 0 0 1 0 1 Nucleus 1 0.500231643921092 0.815389752388 0.999536712157815 hm5C_site_35775 DeepMRMD:0.815389752388;iRNA_m5C:0.999536712157815 35776 chr1 32042974 32042974 1 + C T SKCM 32042959 + 32042939 32042979 41 CTGCCCTACCTGGGCGCCATCTGTTACTGTGACCTCTTCTG CTGCCCTACCTGGGCGCCATCTGTTACTGTGACCTTTTCTG < 41bp 1 0.337030232124303 1 0.164899468421936 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32042959 chr1:32042974 synonymous SNV . 0 36 hm5C_associated_SNPs_36129 0 0 0 0 1 Ribosome 1 0.500231644431618 1 0.999536711136763 hm5C_site_35776 DeepMRMD:1;iRNA_m5C:0.999536711136763 35777 chr1 228526038 228526038 1 + G A SKCM 228526019 + 228525999 228526039 41 TGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGG TGAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAAG < 41bp 1 0.064061309337787 1 0.182869106531143 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526019 chr1:228526038 synonymous SNV . 0 40 hm5C_associated_SNPs_36130 0 0 1 0 2 Ribosome 1 0.500248944894085 1 0.999502110211831 hm5C_site_35777 DeepMRMD:1;iRNA_m5C:0.999502110211831 35778 chr1 228526038 228526038 1 + G A SKCM 228526020 + 228526000 228526040 41 GAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGC GAGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAAGC < 41bp 1 0.0785709404029132 1 0.123235702514648 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526020 chr1:228526038 synonymous SNV . 0 39 hm5C_associated_SNPs_36131 0 0 1 0 2 Ribosome 1 0.500231643998981 1 0.999536712002038 hm5C_site_35778 DeepMRMD:1;iRNA_m5C:0.999536712002038 35779 chr1 228526038 228526038 1 + G A SKCM 228526021 + 228526001 228526041 41 AGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCT AGTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAAGCT < 41bp 1 0.102295415727513 1 0.241210162639618 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526021 chr1:228526038 synonymous SNV . 0 38 hm5C_associated_SNPs_36132 0 0 1 0 2 Ribosome 1 0.500231656536175 1 0.999536686927651 hm5C_site_35779 DeepMRMD:1;iRNA_m5C:0.999536686927651 35780 chr1 228526038 228526038 1 + G A SKCM 228526022 + 228526002 228526042 41 GTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAGGCTG GTGGGGGGCCGCTGAGGCCCCTGAGTTCCCTGGGGAAGCTG < 41bp 1 0.183197264051767 1 0.294770658016205 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228526022 chr1:228526038 synonymous SNV . 0 37 hm5C_associated_SNPs_36133 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35780 DeepMRMD:1;iRNA_m5C:0.999536712157815 35781 chr15 22945069 22945069 1 + C T SKCM 22945057 + 22945037 22945077 41 CAGGTGGTCACGGGCTCGGGCCGCCAGGAGGCCCAGAAGAC CAGGTGGTCACGGGCTCGGGCCGCCAGGAGGCTCAGAAGAC < 41bp 1 0.163085043553559 1 0.200193464756012 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22945057 chr15:22945069 synonymous SNV . 0 33 hm5C_associated_SNPs_36134 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_35781 DeepMRMD:1;iRNA_m5C:0.999536712157815 35782 chr11 45923603 45923603 1 + C T SKCM 45923602 + 45923582 45923622 41 GTGTCTCGATCATCCTCACCCCTGAAGACAGGTAAGTCAGG GTGTCTCGATCATCCTCACCCTTGAAGACAGGTAAGTCAGG < 41bp 1 0.28860039275633 1 0.441153675317764 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923602 chr11:45923603 synonymous SNV . 0 22 hm5C_associated_SNPs_36135 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921249 1 0.999536712157502 hm5C_site_35782 DeepMRMD:1;iRNA_m5C:0.999536712157502 35783 chr7 21631030 21631030 1 + G A SKCM 21631019 + 21630999 21631039 41 AGCACAGAGTTGAGCGCACACAGAAAAACGTGAAGGTGATC AGCACAGAGTTGAGCGCACACAGAAAAACGTAAAGGTGATC < 41bp 1 0.538508289100113 1 0.465632915496826 experiment 0.922983421799774 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21631019 chr7:21631030 synonymous SNV . 0 32 hm5C_associated_SNPs_36136 0 0 0 0 0 nucleolus 1 0.500231643932804 1 0.999536712134391 hm5C_site_35783 DeepMRMD:1;iRNA_m5C:0.999536712134391 35784 chr4 155486959 155486959 1 + G A SKCM 155486953 + 155486933 155486973 41 ATTATATTTCTGCCTCATTCCTTGTAGGGTTTCTTCAGTGC ATTATATTTCTGCCTCATTCCTTGTAAGGTTTCTTCAGTGC < 41bp 1 0.132454026487853 1 0.346915036439896 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FGB ENSG00000171564 splicing Human protein_coding chr4:155486953 chr4:155486959 . 0.001 0 27 hm5C_associated_SNPs_36137 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35784 DeepMRMD:1;iRNA_m5C:0.999536712157815 35785 chr20 42680109 42680109 1 + C T SKCM 42680122 + 42680102 42680142 41 TCCCCATCACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC TCCCCATTACCGCCGGGGAGCAAGTCAGCGACCCCCTCTCC < 41bp 1 0.486564246289322 1 0.212034523487091 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680122 chr20:42680109 nonsynonymous SNV 0.800 3 8 hm5C_associated_SNPs_36138 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35785 DeepMRMD:1;iRNA_m5C:0.999536712157815 35786 chr9 137593095 137593095 1 + C T SKCM 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTTCTCGACCGCAG < 41bp 1 0.298169037257962 1 0.180352836847305 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593095 synonymous SNV . 0 30 hm5C_associated_SNPs_36139 0 0 1 0 2 Nucleus 1 0.500231643921069 1 0.999536712157861 hm5C_site_35786 DeepMRMD:1;iRNA_m5C:0.999536712157861 35787 chr17 75398191 75398191 1 + C T SKCM 75398205 + 75398185 75398225 41 TCCACCCCACCCCGGAGGGTCCAGACTCCCCTACTCCGAGC TCCACCTCACCCCGGAGGGTCCAGACTCCCCTACTCCGAGC < 41bp 1 0.360974995803957 1 0.217221826314926 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 CDS Human protein_coding chr17:75398205 chr17:75398191 nonsynonymous SNV 0.993 0 7 hm5C_associated_SNPs_36140 0 0 1 0 0 Ribosome 1 0.500231643921056 1 0.999536712157888 hm5C_site_35787 DeepMRMD:1;iRNA_m5C:0.999536712157888 35788 chr1 180064816 180064816 1 + G A SKCM 180064828 + 180064808 180064848 41 AAAAATAAGGCAGAAGAAACCATTGTACCTCTAATGGCAGA AAAAATAAAGCAGAAGAAACCATTGTACCTCTAATGGCAGA < 41bp 1 0.0670792058392491 1 0.376574397087097 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP350 ENSG00000135837 CDS Human protein_coding chr1:180064828 chr1:180064816 synonymous SNV . 0 9 hm5C_associated_SNPs_36141 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_35788 DeepMRMD:1;iRNA_m5C:0.999536712157815 35789 chr18 33785177 33785177 1 + C T SKCM 33785182 + 33785162 33785202 41 AGCAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGT AGCAGCCCTGAGGTTTAGGGCCCAATCATCAATTTTAATGT < 41bp 1 0.242342976579347 1 0.0623973906040192 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785182 chr18:33785177 stopgain 0.158 1 16 hm5C_associated_SNPs_36142 0 0 0 0 1 Ribosome 1 0.500231648555639 1 0.999536702888722 hm5C_site_35789 DeepMRMD:1;iRNA_m5C:0.999536702888722 35790 chr18 33785177 33785177 1 + C T SKCM 33785183 + 33785163 33785203 41 GCAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTG GCAGCCCTGAGGTTTAGGGCCCAATCATCAATTTTAATGTG < 41bp 1 0.0540136580859662 1 0.0235882699489594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785183 chr18:33785177 stopgain 0.158 1 15 hm5C_associated_SNPs_36143 0 0 0 0 1 Ribosome 1 0.500231637429636 1 0.999536725140727 hm5C_site_35790 DeepMRMD:1;iRNA_m5C:0.999536725140727 35791 chr18 33785177 33785177 1 + C T SKCM 33785184 + 33785164 33785204 41 CAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTGC CAGCCCTGAGGTTTAGGGCCCAATCATCAATTTTAATGTGC < 41bp 1 0.0376588251847132 1 0.0393129289150238 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785184 chr18:33785177 stopgain 0.158 1 14 hm5C_associated_SNPs_36144 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_35791 DeepMRMD:1;iRNA_m5C:0.999536712157816 35792 chr10 122664263 122664263 1 + C T SKCM 122664258 + 122664238 122664278 41 AGTCACTACTGTCACCTCGTCAGGCCCCTCTCAGAGCACCA AGTCACTACTGTCACCTCGTCAGGCTCCTCTCAGAGCACCA < 41bp 1 0.414708628955992 1 0.76829469203949 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664258 chr10:122664263 nonsynonymous SNV 0.997 3 26 hm5C_associated_SNPs_36145 0 0 1 0 1 Nucleus 1 0.500233028093335 0.46341061592102 0.99953394381333 hm5C_site_35792 DeepMRMD:0.46341061592102;iRNA_m5C:0.99953394381333 35793 chr4 126398344 126398344 1 + G A SKCM 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTTACAGTTAGAGGTATCAGATCTCTAGAACCAATCCT < 41bp 1 0.108967662237064 1 0.78072327375412 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398344 nonsynonymous SNV 0.997 4 13 hm5C_associated_SNPs_36146 0 0 1 0 1 Endoplasmic reticulum 1 0.500233371000989 0.43855345249176 0.999533257998021 hm5C_site_35793 DeepMRMD:0.43855345249176;iRNA_m5C:0.999533257998021 35794 chr10 26994270 26994270 1 + C T SKCM 26994265 + 26994245 26994285 41 ACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTT ACACAGTGGTGAAAAATACACCGATTCTTTCAAACTCGGTT < 41bp 1 0.295957770776366 1 0.0592259764671326 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994265 chr10:26994270 nonsynonymous SNV 0.995 4 26 hm5C_associated_SNPs_36147 0 0 1 0 2 Ribosome 1 0.500231643888494 1 0.999536712223013 hm5C_site_35794 DeepMRMD:1;iRNA_m5C:0.999536712223013 35795 chr6 15487565 15487565 1 + G A SKCM 15487577 + 15487557 15487597 41 GTCAACACGGGAGAAGGAACCTGTTCAAAAACACAAAAGCA GTCAACACAGGAGAAGGAACCTGTTCAAAAACACAAAAGCA < 41bp 1 0.085498335538913 1 0.52179342508316 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15487577 chr6:15487565 nonsynonymous SNV 0.999 2 9 hm5C_associated_SNPs_36148 0 0 1 0 1 Cytosol 1 0.500231668319709 0.95641314983368 0.999536663360582 hm5C_site_35795 DeepMRMD:0.95641314983368;iRNA_m5C:0.999536663360582 35796 chr22 40762483 40762483 1 + C T SKCM 40762482 + 40762462 40762502 41 AGGTGTATCCCCTGTTAAAACCATATGAAAGCGTGATGAAG AGGTGTATCCCCTGTTAAAACTATATGAAAGCGTGATGAAG < 41bp 1 0.623238695700251 1 0.273213624954224 experiment 0.753522608599497 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ADSL ENSG00000239900 CDS Human protein_coding chr22:40762482 chr22:40762483 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_36149 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_35796 DeepMRMD:1;iRNA_m5C:0.999536712157815 35797 chr1 10479767 10479767 1 + C T SKCM 10479787 + 10479767 10479807 41 CCATGGTGGCACCGTGTCATCCTCGTCATACAATGCCTGAT TCATGGTGGCACCGTGTCATCCTCGTCATACAATGCCTGAT < 41bp 1 0.274254932904919 1 0.0946965515613556 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PGD ENSG00000142657 CDS Human protein_coding chr1:10479787 chr1:10479767 synonymous SNV . 0 1 hm5C_associated_SNPs_36150 0 0 1 0 1 Cytosol 1 0.500231712143921 1 0.999536575712158 hm5C_site_35797 DeepMRMD:1;iRNA_m5C:0.999536575712158 35798 chr17 80193902 80193902 1 + G A SKCM 80193913 + 80193893 80193933 41 GGCCGTGGTGGACGAGGGCCCCACAGGCGTCAAGGCCCCTG GGCCGTGGTAGACGAGGGCCCCACAGGCGTCAAGGCCCCTG < 41bp 1 0.583740865817098 1 0.0865874290466309 experiment 0.832518268365804 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC16A3 ENSG00000141526 CDS Human protein_coding chr17:80193913 chr17:80193902 synonymous SNV . 0 10 hm5C_associated_SNPs_36151 0 0 1 0 1 Ribosome 1 0.500231643916538 1 0.999536712166925 hm5C_site_35798 DeepMRMD:1;iRNA_m5C:0.999536712166925 35799 chr12 21205122 21205122 1 + G A SKCM 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGGAACCCGTCTGTGAAAACAATGGAAT < 41bp 1 0.392740412031545 1 0.113608330488205 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205122 nonsynonymous SNV 0.575 5 29 hm5C_associated_SNPs_36152 0 0 0 0 2 nucleus 1 0.500231643920973 1 0.999536712158055 hm5C_site_35799 DeepMRMD:1;iRNA_m5C:0.999536712158055 35800 chrX 101970347 101970347 1 + C T SKCM 101970348 + 101970328 101970368 41 TGTGGATGCTGAAACCTTTCCTGGCACCCAGGGTCAGAAAG TGTGGATGCTGAAACCTTTTCTGGCACCCAGGGTCAGAAAG < 41bp 1 0.66299948127885 1 0.397716552019119 experiment 0.6740010374423 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARMCX5-GPRASP2;GPRASP2 ENSG00000158301 CDS Human protein_coding chrX:101970348 chrX:101970347 nonsynonymous SNV 0.385 0 20 hm5C_associated_SNPs_36153 0 0 0 0 0 unknown 1 0.500231651791642 1 0.999536696416716 hm5C_site_35800 DeepMRMD:1;iRNA_m5C:0.999536696416716 35801 chrX 73046521 73046521 1 + C T SKCM 73046526 - 73046506 73046546 41 TGGAGGCCCATGACCCAGAACCCAGGAAGGATAGAAGCTTG TGGAGGCCCATGACCCAGAACCCAGAAAGGATAGAAGCTTG < 41bp 1 0.158584119055138 1 0.438481241464615 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046526 chrX:73046521 . . 0 26 hm5C_associated_SNPs_36154 0 0 1 3 0 unknown 1 0.500231643938204 1 0.999536712123592 hm5C_site_35801 DeepMRMD:1;iRNA_m5C:0.999536712123592 35802 chrX 73046521 73046521 1 + C T SKCM 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA GGAATCTGGAGGCCCATGACCCAGAACCCAGAAAGGATAGA < 41bp 1 0.276851989641052 1 0.371361911296844 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046521 . . 0 32 hm5C_associated_SNPs_36155 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_35802 DeepMRMD:1;iRNA_m5C:0.999536712157815 35803 chrX 73046521 73046521 1 + C T SKCM 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CGGAATCTGGAGGCCCATGACCCAGAACCCAGAAAGGATAG < 41bp 1 0.262123384987426 1 0.337843775749207 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046521 . . 0 33 hm5C_associated_SNPs_36156 0 0 1 3 0 unknown 1 0.500231649310569 1 0.999536701378861 hm5C_site_35803 DeepMRMD:1;iRNA_m5C:0.999536701378861 35804 chrX 73046521 73046521 1 + C T SKCM 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGAAA < 41bp 1 0.0652219365957593 1 0.168595552444458 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046521 . . 0 39 hm5C_associated_SNPs_36157 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_35804 DeepMRMD:1;iRNA_m5C:0.999536712157816 35805 chr6 168352575 168352575 1 + C T SKCM 168352591 + 168352571 168352611 41 TCCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGA TCCTTGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGA < 41bp 1 0.17615893665192 1 0.248672425746918 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352591 chr6:168352575 nonsynonymous SNV 0.272 2 5 hm5C_associated_SNPs_36158 0 0 1 0 0 unknown 1 0.500231620344693 1 0.999536759310615 hm5C_site_35805 DeepMRMD:1;iRNA_m5C:0.999536759310615 35806 chr6 168352575 168352575 1 + C T SKCM 168352592 + 168352572 168352612 41 CCTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGAC CCTTGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGAC < 41bp 1 0.544142170947848 1 0.487399876117706 experiment 0.911715658104304 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352592 chr6:168352575 nonsynonymous SNV 0.272 2 4 hm5C_associated_SNPs_36159 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_35806 DeepMRMD:1;iRNA_m5C:0.999536712157814 35807 chr6 168352575 168352575 1 + C T SKCM 168352593 + 168352573 168352613 41 CTCGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGACG CTTGGGGGACAGTCTGTCCCCCGACCCGTGGAAGCGGGACG < 41bp 1 0.0847955413991818 1 0.238000631332397 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient AFDN ENSG00000130396 CDS Human protein_coding chr6:168352593 chr6:168352575 nonsynonymous SNV 0.272 2 3 hm5C_associated_SNPs_36160 0 0 1 0 0 unknown 1 0.500231639070203 1 0.999536721859593 hm5C_site_35807 DeepMRMD:1;iRNA_m5C:0.999536721859593 35808 chr1 15978206 15978206 1 + C T SKCM 15978205 + 15978185 15978225 41 GTTTCTTTCTTCCAAGTGTTCCATCGACCTGAAGAAAAATG GTTTCTTTCTTCCAAGTGTTCTATCGACCTGAAGAAAAATG < 41bp 1 0.0858790706717715 1 0.105696976184845 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDI2 ENSG00000197312 CDS Human protein_coding chr1:15978205 chr1:15978206 synonymous SNV . 0 22 hm5C_associated_SNPs_36161 0 0 1 0 0 Ribosome 1 0.500231643015735 1 0.999536713968529 hm5C_site_35808 DeepMRMD:1;iRNA_m5C:0.999536713968529 35809 chrX 7171326 7171326 1 + C T SKCM 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAACATCATCCTGGTGATGGTTGACGA < 41bp 1 0.275307793830864 1 0.039793998003006 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171326 nonsynonymous SNV 0.968 2 35 hm5C_associated_SNPs_36162 0 0 0 0 1 Cytosol 1 0.500230567341267 1 0.999538865317466 hm5C_site_35809 DeepMRMD:1;iRNA_m5C:0.999538865317466 35810 chr1 3329159 3329159 1 + G A SKCM 3329165 + 3329145 3329185 41 CCGCATCCGGCGAGGAGCAGCCGCTGGACCTGAGCATCGGC CCGCATCCGGCGAGAAGCAGCCGCTGGACCTGAGCATCGGC < 41bp 1 0.229613062439346 1 0.221973806619644 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3329165 chr1:3329159 nonsynonymous SNV 0.986 1 15 hm5C_associated_SNPs_36163 0 0 0 0 0 Nucleus 1 0.500231656761353 1 0.999536686477294 hm5C_site_35810 DeepMRMD:1;iRNA_m5C:0.999536686477294 35811 chr16 29856066 29856066 1 + C T SKCM 29856060 + 29856040 29856080 41 AGGCCCCGGGACCAGGCTGTCTTCCCCCAAAACGGGCTGGT AGGCCCCGGGACCAGGCTGTCTTCCCTCAAAACGGGCTGGT < 41bp 1 0.217569478797358 1 0.265074133872986 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29856060 chr16:29856066 synonymous SNV . 0 27 hm5C_associated_SNPs_36164 0 0 0 0 0 Nucleus 1 0.500231643920299 1 0.999536712159402 hm5C_site_35811 DeepMRMD:1;iRNA_m5C:0.999536712159402 35812 chr9 130569509 130569509 1 + C T SKCM 130569510 + 130569490 130569530 41 TGGCAGCTGTGTCTCCATGCCCCCCTACTTCCGCTTCCTGA TGGCAGCTGTGTCTCCATGTCCCCCTACTTCCGCTTCCTGA < 41bp 1 0.119916262015357 1 0.0589411854743958 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130569510 chr9:130569509 nonsynonymous SNV 0.942 4 20 hm5C_associated_SNPs_36165 0 0 0 0 2 Cytosol 1 0.500231643921982 1 0.999536712156036 hm5C_site_35812 DeepMRMD:1;iRNA_m5C:0.999536712156036 35813 chr9 21859377 21859377 1 + C T SKCM 21859391 + 21859371 21859411 41 ACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT ACCATATCTCAGATAGGGTCCACAGAATGGTCAGAAACCCT < 41bp 1 0.250738118303769 1 0.241316199302673 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTAP ENSG00000099810 CDS Human protein_coding chr9:21859391 chr9:21859377 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_36166 0 0 1 1 3 Ribosome 1 0.500231643920739 1 0.999536712158522 hm5C_site_35813 DeepMRMD:1;iRNA_m5C:0.999536712158522 35814 chr17 55183954 55183954 1 + C T SKCM 55183945 + 55183925 55183965 41 CGGTTGGCAAGGTTGCAGGTCGTGTGTGTCAGGCCAGTCAG CGGTTGGCAAGGTTGCAGGTCGTGTGTGTTAGGCCAGTCAG < 41bp 1 0.442151133191911 1 0.0750397741794586 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55183945 chr17:55183954 stopgain 0.003 0 30 hm5C_associated_SNPs_36167 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643813389 1 0.999536712373222 hm5C_site_35814 DeepMRMD:1;iRNA_m5C:0.999536712373222 35815 chr17 55183954 55183954 1 + C T SKCM 55183959 + 55183939 55183979 41 GCAGGTCGTGTGTGTCAGGCCAGTCAGCTCCAAGGGCAGAA GCAGGTCGTGTGTGTTAGGCCAGTCAGCTCCAAGGGCAGAA < 41bp 1 0.224175833393071 1 0.0485777854919434 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55183959 chr17:55183954 stopgain 0.003 0 16 hm5C_associated_SNPs_36168 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644091469 1 0.999536711817062 hm5C_site_35815 DeepMRMD:1;iRNA_m5C:0.999536711817062 35816 chr4 3101050 3101050 1 + C T SKCM 3101067 + 3101047 3101087 41 TTTCTGCTGTGCAGTGATGACGCAGAGTCAGATGTCAGGAT TTTTTGCTGTGCAGTGATGACGCAGAGTCAGATGTCAGGAT < 41bp 1 0.377925450272385 1 0.340752005577087 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3101067 chr4:3101050 synonymous SNV . 0 4 hm5C_associated_SNPs_36169 0 0 1 0 2 Cytosol 1 0.500231894789761 1 0.999536210420478 hm5C_site_35816 DeepMRMD:1;iRNA_m5C:0.999536210420478 35817 chr20 44037095 44037095 1 + C T SKCM 44037094 + 44037074 44037114 41 TACTTGTTTTGCTCCTCTACCCGCAGGAGCTGACATGGACC TACTTGTTTTGCTCCTCTACCTGCAGGAGCTGACATGGACC < 41bp 1 0.69798905183243 1 0.649762868881226 experiment 0.60402189633514 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DBNDD2 ENSG00000244274 CDS Human protein_coding chr20:44037094 chr20:44037095 synonymous SNV . 0 22 hm5C_associated_SNPs_36170 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920425 0.700474262237548 0.999536712159151 hm5C_site_35817 DeepMRMD:0.700474262237548;iRNA_m5C:0.999536712159151 35818 chr1 28861654 28861654 1 + C T SKCM 28861637 + 28861617 28861657 41 TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA TGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCTTCA < 41bp 1 0.237660167702799 1 0.309491813182831 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861637 chr1:28861654 synonymous SNV . 0 38 hm5C_associated_SNPs_36171 0 0 1 0 2 Ribosome 1 0.500231643924801 1 0.999536712150398 hm5C_site_35818 DeepMRMD:1;iRNA_m5C:0.999536712150398 35819 chr7 151791331 151791331 1 + C T SKCM 151791339 + 151791319 151791359 41 AGTGTCACAGTTCGGTATTTCTGTTATGGGTGCCTTTTTAC AGTGTCACAGTTTGGTATTTCTGTTATGGGTGCCTTTTTAC < 41bp 1 0.23764877257358 1 0.0421455800533295 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151791339 chr7:151791331 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_36172 0 0 1 0 1 chromatin 1 0.500231654365744 1 0.999536691268512 hm5C_site_35819 DeepMRMD:1;iRNA_m5C:0.999536691268512 35820 chr11 73007962 73007962 1 + C T SKCM 73007963 + 73007943 73007983 41 GCATCTGCCACCCGCTGGCCCCCTGGCACAAACGTGGGGGC GCATCTGCCACCCGCTGGCTCCCTGGCACAAACGTGGGGGC < 41bp 1 0.280457035190734 1 0.0639312565326691 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control P2RY6 ENSG00000171631 CDS Human protein_coding chr11:73007963 chr11:73007962 synonymous SNV . 0 20 hm5C_associated_SNPs_36174 0 0 0 0 0 exosome 1 0.500231942768275 1 0.99953611446345 hm5C_site_35820 DeepMRMD:1;iRNA_m5C:0.99953611446345 35821 chrX 73046780 73046780 1 + C T SKCM 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGACCTGAGTTGGATGGAAGTCTC < 41bp 1 0.356132114293114 1 0.398927241563797 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046780 . . 0 20 hm5C_associated_SNPs_36175 0 0 1 3 0 unknown 1 0.500231643921086 1 0.999536712157828 hm5C_site_35821 DeepMRMD:1;iRNA_m5C:0.999536712157828 35822 chrX 73046780 73046780 1 + C T SKCM 73046786 - 73046766 73046806 41 AGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGG AGAGGGTGGCCTGAATTGGACCGAAGACCTGAGTTGGATGG < 41bp 1 0.347181856227942 1 0.232086509466171 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046786 chrX:73046780 . . 0 27 hm5C_associated_SNPs_36176 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157817 hm5C_site_35822 DeepMRMD:1;iRNA_m5C:0.999536712157817 35823 chrX 73046780 73046780 1 + C T SKCM 73046797 - 73046777 73046817 41 GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCGAAGGCCT GCCAAGAAAACAGAGGGTGGCCTGAATTGGACCGAAGACCT < 41bp 1 0.269304192636264 1 0.210192114114761 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046797 chrX:73046780 . . 0 38 hm5C_associated_SNPs_36177 0 0 1 3 0 unknown 1 0.500231643921055 1 0.999536712157891 hm5C_site_35823 DeepMRMD:1;iRNA_m5C:0.999536712157891 35824 chr7 45108060 45108060 1 + C T SKCM 45108058 + 45108038 45108078 41 TCAGCCCAGGACCCAGGGATCTCCCCCAGCCAGAGTCTGTG TCAGCCCAGGACCCAGGGATCTTCCCCAGCCAGAGTCTGTG < 41bp 1 0.0966577180113893 1 0.055746853351593 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCM2 ENSG00000136280 CDS Human protein_coding chr7:45108058 chr7:45108060 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_36178 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35824 DeepMRMD:1;iRNA_m5C:0.999536712157815 35825 chr5 50058997 50058997 1 + G A SKCM 50059003 + 50058983 50059023 41 TGAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA TGAACTATGATGGGAAACTGCACAAGCACCCACAACTGGAA < 41bp 1 0.692363783089497 1 0.175847321748734 experiment 0.615272433821007 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PARP8 ENSG00000151883 CDS Human protein_coding chr5:50059003 chr5:50058997 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_36179 0 0 1 0 2 Nucleus 1 0.500231648273775 1 0.999536703452451 hm5C_site_35825 DeepMRMD:1;iRNA_m5C:0.999536703452451 35826 chr19 14568910 14568910 1 + C T SKCM 14568926 + 14568906 14568946 41 GTGGCCCCAATGCCTGGGACCAGAGCTTCACTCTGGAGCTG GTGGTCCCAATGCCTGGGACCAGAGCTTCACTCTGGAGCTG < 41bp 1 0.490645256234461 1 0.519435286521912 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14568926 chr19:14568910 synonymous SNV . 0 5 hm5C_associated_SNPs_36180 0 0 1 0 1 Ribosome 1 0.500231643921097 0.961129426956176 0.999536712157806 hm5C_site_35826 DeepMRMD:0.961129426956176;iRNA_m5C:0.999536712157806 35827 chr20 34092618 34092618 1 + C T SKCM 34092606 + 34092586 34092626 41 AAACCTCCCCAATGGAGGAACAATCTCTAAAACTTGATTCT AAACCTCCCCAATGGAGGAACAATCTCTAAAATTTGATTCT < 41bp 1 0.0328196239964224 1 0.136275500059128 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP250 ENSG00000126001 CDS Human protein_coding chr20:34092606 chr20:34092618 nonsynonymous SNV 0.000 0 33 hm5C_associated_SNPs_36181 0 0 1 0 0 Cytosol 1 0.500231643821007 1 0.999536712357987 hm5C_site_35827 DeepMRMD:1;iRNA_m5C:0.999536712357987 35828 chr1 156756843 156756843 1 + C T SKCM 156756842 + 156756822 156756862 41 GGACGATGCAGCCAATGCCCCCCTTGAATTCAAGATGGCAG GGACGATGCAGCCAATGCCCCTCTTGAATTCAAGATGGCAG < 41bp 1 0.158404415265233 1 0.148959159851074 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756842 chr1:156756843 synonymous SNV . 0 22 hm5C_associated_SNPs_36182 0 0 1 0 0 Ribosome 1 0.499934266608539 1 1 hm5C_site_35828 DeepMRMD:1;iRNA_m5C:1 35829 chr19 36216190 36216190 1 + C T SKCM 36216189 + 36216169 36216209 41 CTCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT CTCACCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCT < 41bp 1 0.0386693613427052 1 0.0700080096721649 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216189 chr19:36216190 nonsynonymous SNV 0.837 4 22 hm5C_associated_SNPs_36184 0 0 1 0 2 chromatin 1 0.500231643925503 1 0.999536712148994 hm5C_site_35829 DeepMRMD:1;iRNA_m5C:0.999536712148994 35830 chr19 36216190 36216190 1 + C T SKCM 36216191 + 36216171 36216211 41 CACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT CACCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTGT < 41bp 1 0.127279257467931 1 0.239529132843018 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216191 chr19:36216190 nonsynonymous SNV 0.837 4 20 hm5C_associated_SNPs_36185 0 0 1 0 2 chromatin 1 0.500231648968736 1 0.999536702062528 hm5C_site_35830 DeepMRMD:1;iRNA_m5C:0.999536702062528 35831 chr19 36216190 36216190 1 + C T SKCM 36216192 + 36216172 36216212 41 ACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTG ACCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTGTG < 41bp 1 0.454479563005172 1 0.491795510053635 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216192 chr19:36216190 nonsynonymous SNV 0.837 4 19 hm5C_associated_SNPs_36186 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35831 DeepMRMD:1;iRNA_m5C:0.999536712157815 35832 chr19 36216190 36216190 1 + C T SKCM 36216193 + 36216173 36216213 41 CCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGT CCTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTGTGT < 41bp 1 0.147531571028897 1 0.391293287277222 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216193 chr19:36216190 nonsynonymous SNV 0.837 4 18 hm5C_associated_SNPs_36187 0 0 1 0 2 chromatin 1 0.500231648405588 1 0.999536703188823 hm5C_site_35832 DeepMRMD:1;iRNA_m5C:0.999536703188823 35833 chr19 36216190 36216190 1 + C T SKCM 36216194 + 36216174 36216214 41 CTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGTG CTCTGTGCCAGGGGGCTCCCCGATGGTGTGCTTGCTGTGTG < 41bp 1 0.349578251777119 1 0.837104976177216 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216194 chr19:36216190 nonsynonymous SNV 0.837 4 17 hm5C_associated_SNPs_36188 0 0 1 0 2 chromatin 1 0.500231643921092 0.325790047645568 0.999536712157815 hm5C_site_35833 DeepMRMD:0.325790047645568;iRNA_m5C:0.999536712157815 35834 chr3 14905687 14905687 1 + G A SKCM 14905692 + 14905672 14905712 41 TCGGCAGCCCCCAAAGAGGACCTTACGTCGGATGAAGAGCA TCGGCAGCCCCCAAAAAGGACCTTACGTCGGATGAAGAGCA < 41bp 1 0.0254479071353063 1 0.0530491769313812 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FGD5 ENSG00000154783 CDS Human protein_coding chr3:14905692 chr3:14905687 nonsynonymous SNV 0.769 1 16 hm5C_associated_SNPs_36189 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35834 DeepMRMD:1;iRNA_m5C:0.999536712157815 35835 chr12 6943094 6943094 1 + C T SKCM 6943099 + 6943079 6943119 41 TCCCTGGCAGATGTCCTTCTCCTGGAGGGTGTGACCTTGAC TCCCTGGCAGATGTCTTTCTCCTGGAGGGTGTGACCTTGAC < 41bp 1 0.289883198492825 1 0.803734362125397 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6943099 chr12:6943094 nonsynonymous SNV 0.259 1 16 hm5C_associated_SNPs_36190 0 0 1 0 1 membrane 1 0.50023164392099 0.392531275749206 0.99953671215802 hm5C_site_35835 DeepMRMD:0.392531275749206;iRNA_m5C:0.99953671215802 35836 chr20 42695407 42695407 1 + G A SKCM 42695411 + 42695391 42695431 41 TTCCCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAA TTCCCCAGCAGCTCGGAATCCTGCTCACCTGGCCCATCCAA < 41bp 1 0.471840630406378 1 0.187154740095139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695411 chr20:42695407 nonsynonymous SNV 0.278 3 17 hm5C_associated_SNPs_36191 0 0 1 0 2 exosome 1 0.500231643921946 1 0.999536712156109 hm5C_site_35836 DeepMRMD:1;iRNA_m5C:0.999536712156109 35837 chrX 2632473 2632473 1 + C T SKCM 2632489 + 2632469 2632509 41 GTTTCGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT GTTTTGATTTATCCGATGCCCTTCCTGGTGAGTATCAACAT < 41bp 1 0.0864971344439408 1 0.0728123486042023 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2632489 chrX:2632473 synonymous SNV . 0 5 hm5C_associated_SNPs_36192 0 0 1 0 2 Endoplasmic reticulum 1 0.500230653339184 1 0.999538693321633 hm5C_site_35837 DeepMRMD:1;iRNA_m5C:0.999538693321633 35838 chr6 158900900 158900900 1 + C T SKCM 158900920 + 158900900 158900940 41 CAGCAGGCCATCGCCAGCACCTTGCGTGAGGACAAGGACGT TAGCAGGCCATCGCCAGCACCTTGCGTGAGGACAAGGACGT < 41bp 1 0.195572932657937 1 0.167676717042923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158900920 chr6:158900900 stopgain 0.999 1 1 hm5C_associated_SNPs_36193 0 0 1 0 0 Ribosome 1 0.50053569152925 1 0.9989286169415 hm5C_site_35838 DeepMRMD:1;iRNA_m5C:0.9989286169415 35839 chr22 29695762 29695762 1 + C T SKCM 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CTCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG < 41bp 1 0.413313785599767 1 0.224251925945282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695762 nonsynonymous SNV 0.994 2 2 hm5C_associated_SNPs_36194 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_35839 DeepMRMD:1;iRNA_m5C:0.999536712157816 35840 chr20 30898673 30898673 1 + C T SKCM 30898670 + 30898650 30898690 41 AATTCCAGGAAGAGATTGCTCGGCTCAAGGCCCAGCTGGAA AATTCCAGGAAGAGATTGCTCGGTTCAAGGCCCAGCTGGAA < 41bp 1 0.417471987075022 1 0.743875622749329 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898670 chr20:30898673 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_36196 0 0 1 0 1 Ribosome 1 0.500231643921092 0.512248754501342 0.999536712157815 hm5C_site_35840 DeepMRMD:0.512248754501342;iRNA_m5C:0.999536712157815 35841 chr10 75674610 75674610 1 + G A SKCM 75674624 + 75674604 75674644 41 GCCCTCGATGTATAACGATCCCCAGTTTGGCACAAGCTGTG GCCCTCAATGTATAACGATCCCCAGTTTGGCACAAGCTGTG < 41bp 1 0.292577755512382 1 0.0879664421081543 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLAU ENSG00000122861 CDS Human protein_coding chr10:75674624 chr10:75674610 synonymous SNV . 0 7 hm5C_associated_SNPs_36197 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643928654 1 0.999536712142692 hm5C_site_35841 DeepMRMD:1;iRNA_m5C:0.999536712142692 35842 chr4 79440571 79440571 1 + C T SKCM 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCTTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT < 41bp 1 0.177127943850163 1 0.506680727005005 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440571 synonymous SNV . 0 4 hm5C_associated_SNPs_36198 0 0 0 0 2 Nucleus 1 0.50023164842245 0.98663854598999 0.9995367031551 hm5C_site_35842 DeepMRMD:0.98663854598999;iRNA_m5C:0.9995367031551 35843 chr4 79440571 79440571 1 + C T SKCM 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCTTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT < 41bp 1 0.452142421865258 1 0.684167325496674 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440571 synonymous SNV . 0 3 hm5C_associated_SNPs_36199 0 0 0 0 2 Nucleus 1 0.500231644039672 0.631665349006652 0.999536711920656 hm5C_site_35843 DeepMRMD:0.631665349006652;iRNA_m5C:0.999536711920656 35844 chr1 110466201 110466201 1 + G A SKCM 110466215 + 110466195 110466235 41 CCCCAAGGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGG CCCCAAAGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGG < 41bp 1 0.181137772733031 1 0.114135354757309 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466215 chr1:110466201 nonsynonymous SNV 0.031 1 7 hm5C_associated_SNPs_36201 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35844 DeepMRMD:1;iRNA_m5C:0.999536712157815 35845 chr1 110466201 110466201 1 + G A SKCM 110466216 + 110466196 110466236 41 CCCAAGGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGC CCCAAAGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGC < 41bp 1 0.0977128201011451 1 0.0770873725414276 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466216 chr1:110466201 nonsynonymous SNV 0.031 1 6 hm5C_associated_SNPs_36202 0 0 0 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_35845 DeepMRMD:1;iRNA_m5C:0.999536712157814 35846 chr1 110466201 110466201 1 + G A SKCM 110466220 + 110466200 110466240 41 AGGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGCAGCA AAGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGCAGCA < 41bp 1 0.287920705874175 1 0.895992875099182 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466220 chr1:110466201 nonsynonymous SNV 0.031 1 2 hm5C_associated_SNPs_36203 0 0 0 0 0 chromatin 1 0.500231643921092 0.208014249801636 0.999536712157815 hm5C_site_35846 DeepMRMD:0.208014249801636;iRNA_m5C:0.999536712157815 35847 chr1 110466201 110466201 1 + G A SKCM 110466221 + 110466201 110466241 41 GGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGCAGCAT AGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGCAGCAT < 41bp 1 0.415013521510717 1 0.958336353302002 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466221 chr1:110466201 nonsynonymous SNV 0.031 1 1 hm5C_associated_SNPs_36204 0 0 0 0 0 chromatin 1 0.500231742161233 0.0833272933959961 0.999536515677534 hm5C_site_35847 DeepMRMD:0.0833272933959961;iRNA_m5C:0.999536515677534 35848 chr19 19656465 19656465 1 + G A SKCM 19656481 + 19656461 19656501 41 CACCGGTGCCCGCGGAGGACCCAGCTGCCTTCTCCATGCTG CACCAGTGCCCGCGGAGGACCCAGCTGCCTTCTCCATGCTG < 41bp 1 0.156549214523106 1 0.224883317947388 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19656481 chr19:19656465 synonymous SNV . 0 5 hm5C_associated_SNPs_36205 0 0 0 0 0 exosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_35848 DeepMRMD:1;iRNA_m5C:0.99953671215782 35849 chr1 163042253 163042253 1 + C T SKCM 163042250 + 163042230 163042270 41 TGATTCCTGTGAACACAATTCTTCCCACAACAAGAAGGACA TGATTCCTGTGAACACAATTCTTTCCACAACAAGAAGGACA < 41bp 1 0.0484881923529829 1 0.141422688961029 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RGS4 ENSG00000117152 CDS Human protein_coding chr1:163042250 chr1:163042253 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_36206 0 0 0 0 2 exosome 1 0.500231312472517 1 0.999537375054966 hm5C_site_35849 DeepMRMD:1;iRNA_m5C:0.999537375054966 35850 chr2 114670797 114670797 1 + C T SKCM 114670803 + 114670783 114670823 41 CCACAGTTTATCATCCCTTCCTGTAAGTATTTCTTTTAAGC CCACAGTTTATCATTCCTTCCTGTAAGTATTTCTTTTAAGC < 41bp 1 0.417682640777697 1 0.349373340606689 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114670803 chr2:114670797 nonsynonymous SNV . 0 15 hm5C_associated_SNPs_36207 0 0 1 0 2 Ribosome 1 0.500231644309912 1 0.999536711380177 hm5C_site_35850 DeepMRMD:1;iRNA_m5C:0.999536711380177 35851 chr1 16199342 16199342 1 + C T SKCM 16199355 + 16199335 16199375 41 AATTCTTCCCAAGAGGGGATCTGAAGGAGGAGTGGCTGCCT AATTCTTTCCAAGAGGGGATCTGAAGGAGGAGTGGCTGCCT < 41bp 1 0.475960693291631 1 0.820903778076172 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16199355 chr1:16199342 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_36208 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.358192443847656 0.999536712157815 hm5C_site_35851 DeepMRMD:0.358192443847656;iRNA_m5C:0.999536712157815 35852 chrX 73046763 73046763 1 + C T SKCM 73046754 - 73046734 73046774 41 GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA GTTGGATGGAAATCTCAAGGCTTGAGTTAGAAGTCTTAAGA < 41bp 1 0.504711903662078 1 0.176859229803085 experiment 0.990576192675845 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046754 chrX:73046763 . . 0 12 hm5C_associated_SNPs_36210 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_35852 DeepMRMD:1;iRNA_m5C:0.999536712157815 35853 chrX 73046763 73046763 1 + C T SKCM 73046779 - 73046759 73046799 41 GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTC GGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAATCTC < 41bp 1 0.314430547250583 1 0.44472473859787 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046779 chrX:73046763 . . 0 37 hm5C_associated_SNPs_36211 0 0 1 0 0 unknown 1 0.500231643921027 1 0.999536712157947 hm5C_site_35853 DeepMRMD:1;iRNA_m5C:0.999536712157947 35854 chr5 52177838 52177838 1 + G A SKCM 52177818 + 52177798 52177838 41 ATAGTCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGG ATAGTCCAGAGAGGTGGCCGCCAGACTATGACAGCTCTTGA < 41bp 1 0.344375047134868 1 0.421135008335114 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52177818 chr5:52177838 nonsynonymous SNV 1.000 5 41 hm5C_associated_SNPs_36212 0 0 0 0 1 chromatin 1 0.500212758979472 1 0.999574482041056 hm5C_site_35854 DeepMRMD:1;iRNA_m5C:0.999574482041056 35855 chr16 30081507 30081507 1 + C T SKCM 30081505 + 30081485 30081525 41 TGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACG TGGGGCTGCTGCCAGCGAGTCCTTCTTCGTCTCTAACCACG < 41bp 1 0.0216589764884017 1 0.0258320868015289 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081505 chr16:30081507 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_36213 0 0 1 0 1 Cytosol 1 0.50023164365109 1 0.99953671269782 hm5C_site_35855 DeepMRMD:1;iRNA_m5C:0.99953671269782 35856 chr16 30081507 30081507 1 + C T SKCM 30081506 + 30081486 30081526 41 GGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGC GGGGCTGCTGCCAGCGAGTCCTTCTTCGTCTCTAACCACGC < 41bp 1 0.146492686023279 1 0.0939122438430786 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081506 chr16:30081507 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_36214 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35856 DeepMRMD:1;iRNA_m5C:0.999536712157815 35857 chr16 30081507 30081507 1 + C T SKCM 30081509 + 30081489 30081529 41 GCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCCTA GCTGCTGCCAGCGAGTCCTTCTTCGTCTCTAACCACGCCTA < 41bp 1 0.452537142804078 1 0.152098834514618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081509 chr16:30081507 nonsynonymous SNV 0.997 4 19 hm5C_associated_SNPs_36215 0 0 1 0 1 Cytosol 1 0.500231643921083 1 0.999536712157835 hm5C_site_35857 DeepMRMD:1;iRNA_m5C:0.999536712157835 35858 chr7 99956641 99956641 1 + C T SKCM 99956624 + 99956604 99956644 41 ACCAGTCTGTGTATTTCTGCCGAGTCGAGCTGGACACCCGG ACCAGTCTGTGTATTTCTGCCGAGTCGAGCTGGACACTCGG < 41bp 1 0.542505517756303 1 0.702185571193695 experiment 0.914988964487394 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956624 chr7:99956641 nonsynonymous SNV 0.000 1 38 hm5C_associated_SNPs_36216 0 0 1 0 0 Cytosol 1 0.500232701122859 0.59562885761261 0.999534597754282 hm5C_site_35858 DeepMRMD:0.59562885761261;iRNA_m5C:0.999534597754282 35859 chr7 99956641 99956641 1 + C T SKCM 99956638 + 99956618 99956658 41 TTCTGCCGAGTCGAGCTGGACACCCGGAGATCAGGGAGGCA TTCTGCCGAGTCGAGCTGGACACTCGGAGATCAGGGAGGCA < 41bp 1 0.1471778398358 1 0.0293949842453003 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956638 chr7:99956641 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_36218 0 0 1 0 0 Cytosol 1 0.500231643531652 1 0.999536712936696 hm5C_site_35859 DeepMRMD:1;iRNA_m5C:0.999536712936696 35860 chr19 19217149 19217149 1 + C T SKCM 19217131 + 19217111 19217151 41 CGCACTGGCTGGAACGACAGCCGCTTCACTGACCTACCCCC CGCACTGGCTGGAACGACAGCCGCTTCACTGACCTACCTCC < 41bp 1 0.205781411465307 1 0.15375080704689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19217131 chr19:19217149 nonsynonymous SNV 0.994 5 39 hm5C_associated_SNPs_36219 0 0 1 0 2 Endoplasmic reticulum 1 0.500231695524013 1 0.999536608951974 hm5C_site_35860 DeepMRMD:1;iRNA_m5C:0.999536608951974 35861 chr10 122664264 122664264 1 + C T SKCM 122664258 + 122664238 122664278 41 AGTCACTACTGTCACCTCGTCAGGCCCCTCTCAGAGCACCA AGTCACTACTGTCACCTCGTCAGGCCTCTCTCAGAGCACCA < 41bp 1 0.395721348699443 1 0.693491816520691 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664258 chr10:122664264 nonsynonymous SNV 0.995 4 27 hm5C_associated_SNPs_36220 0 0 1 0 1 Nucleus 1 0.500231685725707 0.613016366958618 0.999536628548587 hm5C_site_35861 DeepMRMD:0.613016366958618;iRNA_m5C:0.999536628548587 35862 chr3 58118620 58118620 1 + G A SKCM 58118613 + 58118593 58118633 41 CACCCCATCTCAGGAGGGACCTTACATGGTCTCAGTTAAAT CACCCCATCTCAGGAGGGACCTTACATAGTCTCAGTTAAAT < 41bp 1 0.0149047752452821 1 0.190971434116364 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58118613 chr3:58118620 nonsynonymous SNV 0.998 1 28 hm5C_associated_SNPs_36221 0 0 0 0 2 Cytosol 1 0.500231643819977 1 0.999536712360046 hm5C_site_35862 DeepMRMD:1;iRNA_m5C:0.999536712360046 35863 chr10 129231625 129231625 1 + C T SKCM 129231605 + 129231585 129231625 41 GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCC GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCT < 41bp 1 0.532920793911861 1 0.760922968387604 experiment 0.934158412176278 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129231605 chr10:129231625 nonsynonymous SNV 0.886 3 41 hm5C_associated_SNPs_36222 0 0 0 0 2 Nucleus 1 0.500133831696859 0.478154063224792 0.999732336606282 hm5C_site_35863 DeepMRMD:0.478154063224792;iRNA_m5C:0.999732336606282 35864 chr17 73746301 73746301 1 + G A SKCM 73746321 + 73746301 73746341 41 GATCCATTTCAACTGGCTGCCCCCTTCTGGCAAGCCAATGG AATCCATTTCAACTGGCTGCCCCCTTCTGGCAAGCCAATGG < 41bp 1 0.118175402443033 1 0.0921853482723236 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73746321 chr17:73746301 synonymous SNV . 0 1 hm5C_associated_SNPs_36223 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35864 DeepMRMD:1;iRNA_m5C:0.999536712157815 35865 chr1 227618464 227618464 1 + C T SKCM 227618466 + 227618446 227618486 41 TCCATGCCAGTACAAGATCCCGGACTGGTTCTTGAACAGAC TCCATGCCAGTACAAGATTCCGGACTGGTTCTTGAACAGAC < 41bp 1 0.188384003904708 1 0.440061271190643 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC42BPA;ZNF678 ENSG00000234277;ENSG00000242757 ncRNA_exonic Human other chr1:227618466 chr1:227618464 . . 0 19 hm5C_associated_SNPs_36224 0 0 0 0 0 unknown 1 0.500231650182635 1 0.999536699634729 hm5C_site_35865 DeepMRMD:1;iRNA_m5C:0.999536699634729 35866 chr11 47256923 47256923 1 + C T SKCM 47256916 + 47256896 47256936 41 AGTGGGACTGCCCCCTGGGCCTGATCCCGCACCCTCACCGT AGTGGGACTGCCCCCTGGGCCTGATCCTGCACCCTCACCGT < 41bp 1 0.504069820399295 1 0.0571065247058868 experiment 0.991860359201409 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256916 chr11:47256923 nonsynonymous SNV 0.380 0 28 hm5C_associated_SNPs_36225 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35866 DeepMRMD:1;iRNA_m5C:0.999536712157815 35867 chr17 38318286 38318286 1 + G A SKCM 38318298 + 38318278 38318318 41 CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG CAAAGTGGATAAAAAGGGCCCTAAGCATTTGGATGATGATG < 41bp 1 0.157397820442399 1 0.0588571429252625 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318298 chr17:38318286 nonsynonymous SNV 0.995 1 9 hm5C_associated_SNPs_36226 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35867 DeepMRMD:1;iRNA_m5C:0.999536712157815 35868 chr17 38318286 38318286 1 + G A SKCM 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGATAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT < 41bp 1 0.127986927711749 1 0.113242626190186 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318286 nonsynonymous SNV 0.995 1 4 hm5C_associated_SNPs_36227 0 0 1 0 1 Ribosome 1 0.500231643921019 1 0.999536712157962 hm5C_site_35868 DeepMRMD:1;iRNA_m5C:0.999536712157962 35869 chr11 64802341 64802341 1 + C T SKCM 64802321 + 64802301 64802341 41 TTGTCCTGGGGGCCGTAGGCCGGTTTGAAGCCTCAGTGATC TTGTCCTGGGGGCCGTAGGCCGGTTTGAAGCCTCAGTGATT < 41bp 1 0.319874427588901 1 0.38874763250351 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802321 chr11:64802341 synonymous SNV . 0 41 hm5C_associated_SNPs_36229 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35869 DeepMRMD:1;iRNA_m5C:0.999536712157815 35870 chr1 70700397 70700397 1 + G C SKCM 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGCCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT < 41bp 1 0.290356667736812 1 0.0855535864830017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700397 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_36230 0 0 1 0 2 Nucleus 1 0.500231643921023 1 0.999536712157954 hm5C_site_35870 DeepMRMD:1;iRNA_m5C:0.999536712157954 35871 chr19 45850770 45850770 1 + G A SKCM 45850750 + 45850730 45850770 41 ACAGCCTGGCCTCCCTGTTCCCCAGCGAGGAGGAGGAGAGG ACAGCCTGGCCTCCCTGTTCCCCAGCGAGGAGGAGGAGAGA < 41bp 1 0.21254371618976 1 0.0538173913955688 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45850750 chr19:45850770 synonymous SNV . 0 41 hm5C_associated_SNPs_36231 0 0 0 0 3 nucleolus 1 0.500231643918167 1 0.999536712163667 hm5C_site_35871 DeepMRMD:1;iRNA_m5C:0.999536712163667 35872 chr7 101840359 101840359 1 + C T SKCM 101840378 + 101840358 101840398 41 TCGCCCGGCAGGTCAAAGAGCAGCTGATTAAGCACAATATC TTGCCCGGCAGGTCAAAGAGCAGCTGATTAAGCACAATATC < 41bp 1 0.131886610685531 1 0.106064587831497 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101840378 chr7:101840359 synonymous SNV . 0 2 hm5C_associated_SNPs_36232 0 0 1 0 0 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35872 DeepMRMD:1;iRNA_m5C:0.999536712157815 35873 chr5 10415637 10415637 1 + G A SKCM 10415639 + 10415619 10415659 41 AATGTCGTTTTGGACGGGGACTGCCAAAATCCATGAGCTCT AATGTCGTTTTGGACGGGAACTGCCAAAATCCATGAGCTCT < 41bp 1 0.265429745084909 1 0.333441823720932 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10415639 chr5:10415637 synonymous SNV . 0 19 hm5C_associated_SNPs_36233 0 0 1 0 1 Nucleus 1 0.500231643920447 1 0.999536712159107 hm5C_site_35873 DeepMRMD:1;iRNA_m5C:0.999536712159107 35874 chr17 55183968 55183968 1 + C T SKCM 55183959 + 55183939 55183979 41 GCAGGTCGTGTGTGTCAGGCCAGTCAGCTCCAAGGGCAGAA GCAGGTCGTGTGTGTCAGGCCAGTCAGCTTCAAGGGCAGAA < 41bp 1 0.177558253921428 1 0.0517535805702209 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55183959 chr17:55183968 synonymous SNV . 0 30 hm5C_associated_SNPs_36234 0 0 1 0 0 Endoplasmic reticulum 1 0.500231637561517 1 0.999536724876966 hm5C_site_35874 DeepMRMD:1;iRNA_m5C:0.999536724876966 35875 chr17 57738896 57738896 1 + C T SKCM 57738906 + 57738886 57738926 41 ACTTTGGTATCCTTTTGGACCAGGGACAGCTCAACAAATAC ACTTTGGTATTCTTTTGGACCAGGGACAGCTCAACAAATAC < 41bp 1 0.630439008832837 1 0.562865316867828 experiment 0.739121982334326 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57738906 chr17:57738896 synonymous SNV . 0 11 hm5C_associated_SNPs_36235 0 0 1 0 1 Nucleus 1 0.500231643399305 0.874269366264344 0.999536713201389 hm5C_site_35875 DeepMRMD:0.874269366264344;iRNA_m5C:0.999536713201389 35876 chr7 144060321 144060321 1 + G A SKCM 144060317 + 144060297 144060337 41 CAGACCAGATATTATTCTCCCTGCGAAGAGCATCCTGCAGA CAGACCAGATATTATTCTCCCTGCAAAGAGCATCCTGCAGA < 41bp 1 0.528071679992586 1 0.345413208007812 experiment 0.943856640014828 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144060317 chr7:144060321 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_36236 0 0 0 0 0 exosome 1 0.500231643969094 1 0.999536712061812 hm5C_site_35876 DeepMRMD:1;iRNA_m5C:0.999536712061812 35877 chr17 57057653 57057653 1 + G A SKCM 57057658 + 57057638 57057678 41 AGAACTCTTTTCAAGGAGGGCAAGAAGATGGTGGGGATGAT AGAACTCTTTTCAAGAAGGGCAAGAAGATGGTGGGGATGAT < 41bp 1 0.405997868808204 1 0.324874341487885 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1E ENSG00000175175 CDS Human protein_coding chr17:57057658 chr17:57057653 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_36237 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35877 DeepMRMD:1;iRNA_m5C:0.999536712157815 35878 chr12 3389554 3389554 1 + G A SKCM 3389553 + 3389533 3389573 41 CCCTCCGCCTGGCAGGTGAACGAGAACGCCAAGAAGGACCT CCCTCCGCCTGGCAGGTGAACAAGAACGCCAAGAAGGACCT < 41bp 1 0.698039813336539 1 0.532885849475861 experiment 0.603920373326923 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3389553 chr12:3389554 nonsynonymous SNV 0.975 2 22 hm5C_associated_SNPs_36238 0 0 1 0 2 Nucleus 1 0.500231643921092 0.934228301048278 0.999536712157815 hm5C_site_35878 DeepMRMD:0.934228301048278;iRNA_m5C:0.999536712157815 35879 chr22 44332975 44332975 1 + G A SKCM 44332984 + 44332964 44333004 41 CATCCTCAGAAGGGATGGATCCTGAGGTCGCCATGCCCAGC CATCCTCAGAAAGGATGGATCCTGAGGTCGCCATGCCCAGC < 41bp 1 0.560304152980027 1 0.0986269116401672 experiment 0.879391694039946 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332984 chr22:44332975 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_36239 0 0 1 0 1 cytosol 1 0.500231644047281 1 0.999536711905438 hm5C_site_35879 DeepMRMD:1;iRNA_m5C:0.999536711905438 35880 chr6 57012296 57012296 1 + C T SKCM 57012315 + 57012295 57012335 41 CCTGGTTCTGTGAATGCAATCAGCGATTCCCAAGTGAAGAT CTTGGTTCTGTGAATGCAATCAGCGATTCCCAAGTGAAGAT < 41bp 1 0.481244380403576 1 0.386418700218201 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF451 ENSG00000112200 CDS Human protein_coding chr6:57012315 chr6:57012296 synonymous SNV . 0 2 hm5C_associated_SNPs_36240 0 0 1 0 0 chromatin 1 0.500235825677294 1 0.999528348645412 hm5C_site_35880 DeepMRMD:1;iRNA_m5C:0.999528348645412 35881 chr20 52835653 52835653 1 + C T SKCM 52835659 + 52835639 52835679 41 TTGTATGCAAAATTCGGGAGCAACATAAACCTTGAAGCTGA TTGTATGCAAAATTTGGGAGCAACATAAACCTTGAAGCTGA < 41bp 1 0.663917571790176 1 0.199393004179001 experiment 0.672164856419647 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PFDN4 ENSG00000101132 CDS Human protein_coding chr20:52835659 chr20:52835653 synonymous SNV . 0 15 hm5C_associated_SNPs_36241 0 0 1 0 1 Ribosome 1 0.500231644450505 1 0.99953671109899 hm5C_site_35881 DeepMRMD:1;iRNA_m5C:0.99953671109899 35882 chr6 7578094 7578094 1 + C T SKCM 7578111 + 7578091 7578131 41 AGTCCCCTTCTGGGGTGATTCTGCAAGAGGTATATATGTCA AGTTCCCTTCTGGGGTGATTCTGCAAGAGGTATATATGTCA < 41bp 1 0.669147653494491 1 0.938224673271179 experiment 0.661704693011018 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7578111 chr6:7578094 nonsynonymous SNV 0.606 5 4 hm5C_associated_SNPs_36242 0 0 1 0 2 Nucleus 1 0.500231643725206 0.123550653457642 0.999536712549589 hm5C_site_35882 DeepMRMD:0.123550653457642;iRNA_m5C:0.999536712549589 35883 chr1 214503535 214503535 1 + C T SKCM 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTCTTGTACCCAACGGAAGATAGAAATGACCGGT < 41bp 1 0.659309837543225 1 0.52396160364151 experiment 0.681380324913551 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503535 synonymous SNV . 0 11 hm5C_associated_SNPs_36243 0 0 1 0 2 Ribosome 1 0.500231643921089 0.95207679271698 0.999536712157821 hm5C_site_35883 DeepMRMD:0.95207679271698;iRNA_m5C:0.999536712157821 35884 chr12 56347547 56347547 1 + A T SKCM 56347561 + 56347541 56347581 41 TTCTTGAGCTAAGGGGGACACCCTTGGCCTCCAAGCCAGCC TTCTTGTGCTAAGGGGGACACCCTTGGCCTCCAAGCCAGCC < 41bp 1 0.206303712819537 1 0.0450488924980164 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56347561 chr12:56347547 nonsynonymous SNV 0.472 3 7 hm5C_associated_SNPs_36244 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_35884 DeepMRMD:1;iRNA_m5C:0.999536712157813 35885 chr16 30749171 30749171 1 + C G SKCM 30749182 + 30749162 30749202 41 TCTCTCACCCCTTCTGCACCCAGCCTGACCTTGGAGGCTGG TCTCTCACCGCTTCTGCACCCAGCCTGACCTTGGAGGCTGG < 41bp 1 0.250912814464252 1 0.583790063858032 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30749182 chr16:30749171 nonsynonymous SNV 0.273 1 10 hm5C_associated_SNPs_36245 0 0 1 0 0 Ribosome 1 0.500231643918806 0.832419872283936 0.999536712162387 hm5C_site_35885 DeepMRMD:0.832419872283936;iRNA_m5C:0.999536712162387 35886 chr7 120935653 120935653 1 + G A SKCM 120935667 + 120935647 120935687 41 AATCAGGTTTGTTCTGAAATCCTTCTCAGCAGGATGTGTGC AATCAGATTTGTTCTGAAATCCTTCTCAGCAGGATGTGTGC < 41bp 1 0.0334577632342478 1 0.148045301437378 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPED1 ENSG00000106034 CDS Human protein_coding chr7:120935667 chr7:120935653 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_36246 0 0 1 0 0 chromatin 1 0.500231643783918 1 0.999536712432164 hm5C_site_35886 DeepMRMD:1;iRNA_m5C:0.999536712432164 35887 chr1 45270013 45270013 1 + G A SKCM 45270016 + 45269996 45270036 41 CCTCTCCCATGACAGCGGAACAGAACCCGGCCCCCCTGGCC CCTCTCCCATGACAGCGAAACAGAACCCGGCCCCCCTGGCC < 41bp 1 0.695496441320924 1 0.831506371498108 experiment 0.609007117358152 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270016 chr1:45270013 nonsynonymous SNV 0.998 0 18 hm5C_associated_SNPs_36247 0 0 1 0 1 Cytosol 1 0.500231643921092 0.336987257003784 0.999536712157815 hm5C_site_35887 DeepMRMD:0.336987257003784;iRNA_m5C:0.999536712157815 35888 chr7 128486908 128486908 1 + A C SKCM 128486898 + 128486878 128486918 41 GGTAGCTGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA GGTAGCTGCACCGTGGAGTACATCCCCTTCCCTCCTGGAGA < 41bp 1 0.042495675962564 1 0.0516781806945801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486898 chr7:128486908 nonsynonymous SNV 0.988 2 31 hm5C_associated_SNPs_36248 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35888 DeepMRMD:1;iRNA_m5C:0.999536712157815 35889 chr11 63449115 63449115 1 + G C SKCM 63449096 + 63449076 63449116 41 TTTCACCCTTCTCCCACCCTCGCTCGCGTAGCCATGGCGGA TTTCACCCTTCTCCCACCCTCGCTCGCGTAGCCATGGCGCA < 41bp 1 0.451580868825653 1 0.208888083696365 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RTN3 ENSG00000133318 CDS Human protein_coding chr11:63449096 chr11:63449115 nonsynonymous SNV 0.998 2 40 hm5C_associated_SNPs_36249 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_35889 DeepMRMD:1;iRNA_m5C:0.999536712157815 35890 chr11 63449115 63449115 1 + G C SKCM 63449100 + 63449080 63449120 41 ACCCTTCTCCCACCCTCGCTCGCGTAGCCATGGCGGAGCCG ACCCTTCTCCCACCCTCGCTCGCGTAGCCATGGCGCAGCCG < 41bp 1 0.671173324248058 1 0.192402929067612 experiment 0.657653351503883 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RTN3 ENSG00000133318 CDS Human protein_coding chr11:63449100 chr11:63449115 nonsynonymous SNV 0.998 2 36 hm5C_associated_SNPs_36250 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643922104 1 0.999536712155792 hm5C_site_35890 DeepMRMD:1;iRNA_m5C:0.999536712155792 35891 chr1 154962690 154962690 1 + C T SKCM 154962708 + 154962688 154962728 41 CCCCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC CCTCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC < 41bp 1 0.296001352038779 1 0.192055284976959 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962708 chr1:154962690 nonsynonymous SNV 0.986 1 3 hm5C_associated_SNPs_36252 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35891 DeepMRMD:1;iRNA_m5C:0.999536712157815 35892 chr1 154962691 154962691 1 + C T SKCM 154962708 + 154962688 154962728 41 CCCCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC CCCTTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC < 41bp 1 0.268854571801438 1 0.184926390647888 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962708 chr1:154962691 nonsynonymous SNV 0.988 2 4 hm5C_associated_SNPs_36253 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35892 DeepMRMD:1;iRNA_m5C:0.999536712157815 35893 chr10 135197568 135197568 1 + C T SKCM 135197583 + 135197563 135197603 41 TCTTCCTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC TCTTCTTGGAGTTTGAGGAGCCCTTCTGGGAGCCAGACTGC < 41bp 1 0.0639158788198692 1 0.0445739030838013 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197583 chr10:135197568 synonymous SNV . 0 6 hm5C_associated_SNPs_36254 0 0 0 1 1 exosome 1 0.500231643921005 1 0.999536712157989 hm5C_site_35893 DeepMRMD:1;iRNA_m5C:0.999536712157989 35894 chr19 13054393 13054393 1 + G A SKCM 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACAATGAGGCATACGCTGAGGAGTTTGGCAACGA < 41bp 1 0.564416448540365 1 0.139154613018036 experiment 0.87116710291927 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054393 nonsynonymous SNV 0.952 2 10 hm5C_associated_SNPs_36255 0 0 1 0 2 Ribosome 1 0.50025393164501 1 0.999492136709981 hm5C_site_35894 DeepMRMD:1;iRNA_m5C:0.999492136709981 35895 chr19 13054393 13054393 1 + G A SKCM 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACAATGAGGCATACGCTGAGGAGTTTGGCAACGAGA < 41bp 1 0.691708780076702 1 0.24506202340126 experiment 0.616582439846597 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054393 nonsynonymous SNV 0.952 2 8 hm5C_associated_SNPs_36256 0 0 1 0 2 Ribosome 1 0.500231772572188 1 0.999536454855624 hm5C_site_35895 DeepMRMD:1;iRNA_m5C:0.999536454855624 35896 chr7 142459821 142459821 1 + C T SKCM 142459802 + 142459782 142459822 41 AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCC AACGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTTC < 41bp 1 0.443990037386331 1 0.176809638738632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459802 chr7:142459821 nonsynonymous SNV 0.000 2 40 hm5C_associated_SNPs_36257 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35896 DeepMRMD:1;iRNA_m5C:0.999536712157815 35897 chr7 142459821 142459821 1 + C T SKCM 142459804 + 142459784 142459824 41 CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAG CGCCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTTCAG < 41bp 1 0.631081653788024 1 0.224206894636154 experiment 0.737836692423952 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459804 chr7:142459821 nonsynonymous SNV 0.000 2 38 hm5C_associated_SNPs_36258 0 0 0 0 1 Cytosol 1 0.500231641520176 1 0.999536716959648 hm5C_site_35897 DeepMRMD:1;iRNA_m5C:0.999536716959648 35898 chr7 142459821 142459821 1 + C T SKCM 142459806 + 142459786 142459826 41 CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCC CCCGCGTGTCCACCATCTCTCTGCCCACCGCCCCTTCAGCC < 41bp 1 0.558091492924233 1 0.313506573438644 experiment 0.883817014151534 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459806 chr7:142459821 nonsynonymous SNV 0.000 2 36 hm5C_associated_SNPs_36259 0 0 0 0 1 Cytosol 1 0.500231643919952 1 0.999536712160095 hm5C_site_35898 DeepMRMD:1;iRNA_m5C:0.999536712160095 35899 chr7 142459821 142459821 1 + C T SKCM 142459809 + 142459789 142459829 41 GCGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACT GCGTGTCCACCATCTCTCTGCCCACCGCCCCTTCAGCCACT < 41bp 1 0.160348446503121 1 0.0486319065093994 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459809 chr7:142459821 nonsynonymous SNV 0.000 2 33 hm5C_associated_SNPs_36260 0 0 0 0 1 Cytosol 1 0.500231643920793 1 0.999536712158414 hm5C_site_35899 DeepMRMD:1;iRNA_m5C:0.999536712158414 35900 chr7 142459821 142459821 1 + C T SKCM 142459810 + 142459790 142459830 41 CGTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTG CGTGTCCACCATCTCTCTGCCCACCGCCCCTTCAGCCACTG < 41bp 1 0.220709192719187 1 0.0714983642101288 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459810 chr7:142459821 nonsynonymous SNV 0.000 2 32 hm5C_associated_SNPs_36261 0 0 0 0 1 Cytosol 1 0.500231643921421 1 0.999536712157157 hm5C_site_35900 DeepMRMD:1;iRNA_m5C:0.999536712157157 35901 chr7 142459821 142459821 1 + C T SKCM 142459811 + 142459791 142459831 41 GTGTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGG GTGTCCACCATCTCTCTGCCCACCGCCCCTTCAGCCACTGG < 41bp 1 0.619784005815891 1 0.0458442866802216 experiment 0.760431988368218 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459811 chr7:142459821 nonsynonymous SNV 0.000 2 31 hm5C_associated_SNPs_36262 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35901 DeepMRMD:1;iRNA_m5C:0.999536712157815 35902 chr7 142459821 142459821 1 + C T SKCM 142459813 + 142459793 142459833 41 GTCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCA GTCCACCATCTCTCTGCCCACCGCCCCTTCAGCCACTGGCA < 41bp 1 0.287819549725987 1 0.0899697840213776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459813 chr7:142459821 nonsynonymous SNV 0.000 2 29 hm5C_associated_SNPs_36263 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35902 DeepMRMD:1;iRNA_m5C:0.999536712157815 35903 chr7 142459821 142459821 1 + C T SKCM 142459814 + 142459794 142459834 41 TCCACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCAC TCCACCATCTCTCTGCCCACCGCCCCTTCAGCCACTGGCAC < 41bp 1 0.472013035269342 1 0.134108453989029 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459814 chr7:142459821 nonsynonymous SNV 0.000 2 28 hm5C_associated_SNPs_36264 0 0 0 0 1 Cytosol 1 0.500231477048267 1 0.999537045903466 hm5C_site_35903 DeepMRMD:1;iRNA_m5C:0.999537045903466 35904 chr7 142459821 142459821 1 + C T SKCM 142459816 + 142459796 142459836 41 CACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGA CACCATCTCTCTGCCCACCGCCCCTTCAGCCACTGGCACGA < 41bp 1 0.29825131016383 1 0.235761135816574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459816 chr7:142459821 nonsynonymous SNV 0.000 2 26 hm5C_associated_SNPs_36265 0 0 0 0 1 Cytosol 1 0.500231643762295 1 0.999536712475409 hm5C_site_35904 DeepMRMD:1;iRNA_m5C:0.999536712475409 35905 chr7 142459821 142459821 1 + C T SKCM 142459817 + 142459797 142459837 41 ACCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAA ACCATCTCTCTGCCCACCGCCCCTTCAGCCACTGGCACGAA < 41bp 1 0.150601957459431 1 0.197280466556549 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459817 chr7:142459821 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_36266 0 0 0 0 1 Cytosol 1 0.500231643957333 1 0.999536712085334 hm5C_site_35905 DeepMRMD:1;iRNA_m5C:0.999536712085334 35906 chr7 142459821 142459821 1 + C T SKCM 142459818 + 142459798 142459838 41 CCATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAG CCATCTCTCTGCCCACCGCCCCTTCAGCCACTGGCACGAAG < 41bp 1 0.0641470818536548 1 0.158240377902985 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459818 chr7:142459821 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_36267 0 0 0 0 1 Cytosol 1 0.500231627827106 1 0.999536744345788 hm5C_site_35906 DeepMRMD:1;iRNA_m5C:0.999536744345788 35907 chr7 142459821 142459821 1 + C T SKCM 142459819 + 142459799 142459839 41 CATCTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGT CATCTCTCTGCCCACCGCCCCTTCAGCCACTGGCACGAAGT < 41bp 1 0.455730326431829 1 0.34131845831871 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459819 chr7:142459821 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_36268 0 0 0 0 1 Cytosol 1 0.500231644005022 1 0.999536711989955 hm5C_site_35907 DeepMRMD:1;iRNA_m5C:0.999536711989955 35908 chr7 142459821 142459821 1 + C T SKCM 142459822 + 142459802 142459842 41 CTCTCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCC CTCTCTGCCCACCGCCCCTTCAGCCACTGGCACGAAGTGCC < 41bp 1 0.459110270552111 1 0.437750905752182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459822 chr7:142459821 nonsynonymous SNV 0.000 2 20 hm5C_associated_SNPs_36269 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35908 DeepMRMD:1;iRNA_m5C:0.999536712157815 35909 chr7 142459821 142459821 1 + C T SKCM 142459825 + 142459805 142459845 41 TCTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCA TCTGCCCACCGCCCCTTCAGCCACTGGCACGAAGTGCCTCA < 41bp 1 0.438646425332737 1 0.104626834392548 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459825 chr7:142459821 nonsynonymous SNV 0.000 2 17 hm5C_associated_SNPs_36270 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35909 DeepMRMD:1;iRNA_m5C:0.999536712157815 35910 chr7 142459821 142459821 1 + C T SKCM 142459826 + 142459806 142459846 41 CTGCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCAT CTGCCCACCGCCCCTTCAGCCACTGGCACGAAGTGCCTCAT < 41bp 1 0.686927688424662 1 0.148946642875671 experiment 0.626144623150676 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459826 chr7:142459821 nonsynonymous SNV 0.000 2 16 hm5C_associated_SNPs_36271 0 0 0 0 1 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_35910 DeepMRMD:1;iRNA_m5C:0.999536712157812 35911 chr7 142459821 142459821 1 + C T SKCM 142459828 + 142459808 142459848 41 GCCCACCGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCT GCCCACCGCCCCTTCAGCCACTGGCACGAAGTGCCTCATCT < 41bp 1 0.682194059996303 1 0.10391828417778 experiment 0.635611880007394 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459828 chr7:142459821 nonsynonymous SNV 0.000 2 14 hm5C_associated_SNPs_36272 0 0 0 0 1 Cytosol 1 0.500231651427595 1 0.99953669714481 hm5C_site_35911 DeepMRMD:1;iRNA_m5C:0.99953669714481 35912 chr7 142459821 142459821 1 + C T SKCM 142459834 + 142459814 142459854 41 CGCCCCTCCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT CGCCCCTTCAGCCACTGGCACGAAGTGCCTCATCTCTGGCT < 41bp 1 0.666012525604675 1 0.30675283074379 experiment 0.66797494879065 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459834 chr7:142459821 nonsynonymous SNV 0.000 2 8 hm5C_associated_SNPs_36273 0 0 0 0 1 Cytosol 1 0.500232293715172 1 0.999535412569656 hm5C_site_35912 DeepMRMD:1;iRNA_m5C:0.999535412569656 35913 chr7 142459821 142459821 1 + C T SKCM 142459841 + 142459821 142459861 41 CCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA TCAGCCACTGGCACGAAGTGCCTCATCTCTGGCTGGGGCAA < 41bp 1 0.384950899363136 1 0.0479970276355743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459841 chr7:142459821 nonsynonymous SNV 0.000 2 1 hm5C_associated_SNPs_36274 0 0 0 0 1 Cytosol 1 0.500231642689809 1 0.999536714620381 hm5C_site_35913 DeepMRMD:1;iRNA_m5C:0.999536714620381 35914 chr12 120875933 120875933 1 + G A SKCM 120875925 + 120875905 120875945 41 GGCGCTGCGGCAGTCCAGATCAAAAATGGCGGTAGTTGGTG GGCGCTGCGGCAGTCCAGATCAAAAATGACGGTAGTTGGTG < 41bp 1 0.680134753521409 1 0.367364883422852 experiment 0.639730492957183 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COX6A1 ENSG00000111775 CDS Human protein_coding chr12:120875925 chr12:120875933 nonsynonymous SNV 0.142 1 29 hm5C_associated_SNPs_36275 0 0 1 0 1 Ribosome 1 0.500231644276593 1 0.999536711446814 hm5C_site_35914 DeepMRMD:1;iRNA_m5C:0.999536711446814 35915 chr2 224824666 224824666 1 + A T SKCM 224824686 + 224824666 224824706 41 ATTGGAGCCCTGTTACAGAGCAGTGGACCTGAGAGGACTGC TTTGGAGCCCTGTTACAGAGCAGTGGACCTGAGAGGACTGC < 41bp 1 0.494530475555965 1 0.14020049571991 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824686 chr2:224824666 nonsynonymous SNV 0.948 1 1 hm5C_associated_SNPs_36276 0 0 1 0 0 Ribosome 1 0.500231643971354 1 0.999536712057292 hm5C_site_35915 DeepMRMD:1;iRNA_m5C:0.999536712057292 35916 chr18 48604711 48604711 1 + G A SKCM 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAAAGGCTGGGGACCAGATTACCCAAGACAGAGCA < 41bp 1 0.413381793688056 1 0.594128489494324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604711 synonymous SNV . 0 22 hm5C_associated_SNPs_36277 1 0 1 0 1 Cytosol 1 0.500231643921092 0.811743021011352 0.999536712157815 hm5C_site_35916 DeepMRMD:0.811743021011352;iRNA_m5C:0.999536712157815 not specified not specified 35917 chr4 74308046 74308046 1 + C T SKCM 74308041 + 74308021 74308061 41 ATGAGATAGCAAGAAGGCATCCCTTCCTGTATGCACCTACA ATGAGATAGCAAGAAGGCATCCCTTTCTGTATGCACCTACA < 41bp 1 0.0910663393327111 1 0.0345560908317566 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFP ENSG00000081051 CDS Human protein_coding chr4:74308041 chr4:74308046 synonymous SNV . 0 26 hm5C_associated_SNPs_36278 0 0 1 0 2 Endoplasmic reticulum 1 0.500231636728921 1 0.999536726542159 hm5C_site_35917 DeepMRMD:1;iRNA_m5C:0.999536726542159 35918 chr7 128494173 128494173 1 + C T SKCM 128494192 + 128494172 128494212 41 CCACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGG CTACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGG < 41bp 1 0.0427141397829278 1 0.0776284635066986 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128494192 chr7:128494173 synonymous SNV . 0 2 hm5C_associated_SNPs_36279 0 0 0 0 0 chromatin 1 0.500231643946427 1 0.999536712107145 hm5C_site_35918 DeepMRMD:1;iRNA_m5C:0.999536712107145 35919 chr7 128494173 128494173 1 + C T SKCM 128494193 + 128494173 128494213 41 CACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGGG TACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGGG < 41bp 1 0.0147257970716727 1 0.232538908720016 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128494193 chr7:128494173 synonymous SNV . 0 1 hm5C_associated_SNPs_36280 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_35919 DeepMRMD:1;iRNA_m5C:0.999536712157815 35920 chr14 105180803 105180803 1 + C T SKCM 105180798 + 105180778 105180818 41 CCCCCAGCCCTTGGAGGGGGCCTGGCCGGTGACTCTGGGAG CCCCCAGCCCTTGGAGGGGGCCTGGTCGGTGACTCTGGGAG < 41bp 1 0.125619566689751 1 0.210346639156342 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105180798 chr14:105180803 nonsynonymous SNV 0.982 1 26 hm5C_associated_SNPs_36281 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35920 DeepMRMD:1;iRNA_m5C:0.999536712157815 35921 chr19 3533324 3533324 1 + C T SKCM 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATTCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA < 41bp 1 0.105933351206732 1 0.103861570358276 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533324 synonymous SNV . 0 4 hm5C_associated_SNPs_36282 0 0 0 0 2 Ribosome 1 0.500231668198777 1 0.999536663602446 hm5C_site_35921 DeepMRMD:1;iRNA_m5C:0.999536663602446 35922 chr12 111744791 111744791 1 + G A SKCM 111744777 + 111744757 111744797 41 TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCC TCGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGAAGATCC < 41bp 1 0.0284552970143037 1 0.119022130966187 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744777 chr12:111744791 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_36283 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35922 DeepMRMD:1;iRNA_m5C:0.999536712157815 35923 chr12 111744791 111744791 1 + G A SKCM 111744778 + 111744758 111744798 41 CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCT CGGCTGGAGGCCGCGCTGGCCTCCAAGGACAGGAAGATCCT < 41bp 1 0.528828440138247 1 0.967212557792664 experiment 0.942343119723505 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744778 chr12:111744791 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_36284 0 0 0 0 1 exosome 1 0.500231642399135 0.065574884414672 0.999536715201731 hm5C_site_35923 DeepMRMD:0.065574884414672;iRNA_m5C:0.999536715201731 35924 chr12 111744791 111744791 1 + G A SKCM 111744780 + 111744760 111744800 41 GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGC GCTGGAGGCCGCGCTGGCCTCCAAGGACAGGAAGATCCTGC < 41bp 1 0.260143162396695 1 0.859387755393982 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744780 chr12:111744791 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_36285 0 0 0 0 1 exosome 1 0.500231644710837 0.281224489212036 0.999536710578325 hm5C_site_35924 DeepMRMD:0.281224489212036;iRNA_m5C:0.999536710578325 35925 chr12 111744791 111744791 1 + G A SKCM 111744781 + 111744761 111744801 41 CTGGAGGCCGCGCTGGCCTCCAAGGACAGGGAGATCCTGCG CTGGAGGCCGCGCTGGCCTCCAAGGACAGGAAGATCCTGCG < 41bp 1 0.430951504519736 1 0.859971642494202 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744781 chr12:111744791 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_36286 0 0 0 0 1 exosome 1 0.500231643921093 0.280056715011596 0.999536712157815 hm5C_site_35925 DeepMRMD:0.280056715011596;iRNA_m5C:0.999536712157815 35926 chr1 179851740 179851740 1 + C T SKCM 179851757 + 179851737 179851777 41 CCTCAAAATGGCGGCAGCAGCGATGCGCCTGCGTACAGAAC CCTTAAAATGGCGGCAGCAGCGATGCGCCTGCGTACAGAAC < 41bp 1 0.637733760352571 1 0.308398097753525 experiment 0.724532479294857 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TOR1AIP1 ENSG00000143337 CDS Human protein_coding chr1:179851757 chr1:179851740 stopgain 0.999 0 4 hm5C_associated_SNPs_36287 0 0 1 0 0 Endoplasmic reticulum 1 0.500230787686637 1 0.999538424626726 hm5C_site_35926 DeepMRMD:1;iRNA_m5C:0.999538424626726 35927 chr9 135942496 135942496 1 + C T SKCM 135942479 + 135942459 135942499 41 TTGGTTCTGCCCCCAGGTGGCTGAGAAGGTGGGTTGCCCTG TTGGTTCTGCCCCCAGGTGGCTGAGAAGGTGGGTTGCTCTG < 41bp 1 0.501123854824725 1 0.25641193985939 experiment 0.997752290350549 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942479 chr9:135942496 nonsynonymous SNV 0.827 3 38 hm5C_associated_SNPs_36288 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35927 DeepMRMD:1;iRNA_m5C:0.999536712157815 35928 chr9 135942496 135942496 1 + C T SKCM 135942495 + 135942475 135942515 41 GTGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAG GTGGCTGAGAAGGTGGGTTGCTCTGTGGGTGATGCCGCCAG < 41bp 1 0.541076982163108 1 0.158334314823151 experiment 0.917846035673784 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942495 chr9:135942496 nonsynonymous SNV 0.827 3 22 hm5C_associated_SNPs_36289 0 0 0 0 1 exosome 1 0.50023164419951 1 0.999536711600979 hm5C_site_35928 DeepMRMD:1;iRNA_m5C:0.999536711600979 35929 chr9 135942496 135942496 1 + C T SKCM 135942497 + 135942477 135942517 41 GGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA GGCTGAGAAGGTGGGTTGCTCTGTGGGTGATGCCGCCAGGA < 41bp 1 0.6420364348329 1 0.773226737976074 experiment 0.7159271303342 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942497 chr9:135942496 nonsynonymous SNV 0.827 3 20 hm5C_associated_SNPs_36290 0 0 0 0 1 exosome 1 0.500231732198599 0.453546524047852 0.999536535602801 hm5C_site_35929 DeepMRMD:0.453546524047852;iRNA_m5C:0.999536535602801 35930 chr9 135942496 135942496 1 + C T SKCM 135942509 + 135942489 135942529 41 GGGTTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTC GGGTTGCTCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTC < 41bp 1 0.217715709552264 1 0.225816667079926 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942509 chr9:135942496 nonsynonymous SNV 0.827 3 8 hm5C_associated_SNPs_36291 0 0 0 0 1 exosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_35930 DeepMRMD:1;iRNA_m5C:0.999536712157812 35931 chr9 135942496 135942496 1 + C T SKCM 135942512 + 135942492 135942532 41 TTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTCTGA TTGCTCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTCTGA < 41bp 1 0.44247893694961 1 0.74531763792038 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942512 chr9:135942496 nonsynonymous SNV 0.827 3 5 hm5C_associated_SNPs_36292 0 0 0 0 1 exosome 1 0.500231283521423 0.50936472415924 0.999537432957154 hm5C_site_35931 DeepMRMD:0.50936472415924;iRNA_m5C:0.999537432957154 35932 chr11 67804056 67804056 1 + G A SKCM 67804064 + 67804044 67804084 41 ACTACTTGTATCGGTGACGCCCCACCGGCCCGCAGCCCCTG ACTACTTGTATCAGTGACGCCCCACCGGCCCGCAGCCCCTG < 41bp 1 0.116243014729272 1 0.169655561447144 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFS8 ENSG00000110717 CDS Human protein_coding chr11:67804064 chr11:67804056 nonsynonymous SNV 0.841 5 13 hm5C_associated_SNPs_36293 0 0 1 0 0 Ribosome 1 0.50023165195388 1 0.99953669609224 hm5C_site_35932 DeepMRMD:1;iRNA_m5C:0.99953669609224 35933 chrX 73046067 73046067 1 + G A SKCM 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATGTGAAGA < 41bp 1 0.104181348689015 1 0.491788625717163 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046067 . . 0 23 hm5C_associated_SNPs_36294 0 0 1 14 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_35933 DeepMRMD:1;iRNA_m5C:0.999536712157815 35934 chrX 73046067 73046067 1 + G A SKCM 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAATG < 41bp 1 0.240505662213467 1 0.242459177970886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046067 . . 0 29 hm5C_associated_SNPs_36295 0 0 1 14 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_35934 DeepMRMD:1;iRNA_m5C:0.999536712157816 35935 chrX 73046067 73046067 1 + G A SKCM 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTGCCAGGCTCTTTAGAGAAAAAT < 41bp 1 0.109271259701581 1 0.289082527160645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046067 . . 0 30 hm5C_associated_SNPs_36296 0 0 1 14 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_35935 DeepMRMD:1;iRNA_m5C:0.999536712157815 35936 chr9 135919202 135919202 1 + C T SKCM 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTCCGGCTCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC < 41bp 1 0.0552421648085524 1 0.0388269126415253 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919202 nonsynonymous SNV 0.444 0 8 hm5C_associated_SNPs_36297 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35936 DeepMRMD:1;iRNA_m5C:0.999536712157815 35937 chr12 62938739 62938739 1 + T A SKCM 62938730 + 62938710 62938750 41 ATGGGGAGCAGAAGCTTTAACTTCTCTTATTAAAGCAGGAT ATGGGGAGCAGAAGCTTTAACTTCTCTTAATAAAGCAGGAT < 41bp 1 0.204274608764404 1 0.22365528345108 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62938730 chr12:62938739 nonsynonymous SNV 0.996 4 30 hm5C_associated_SNPs_36298 0 0 1 0 2 Nucleus 1 0.50023164386311 1 0.999536712273779 hm5C_site_35937 DeepMRMD:1;iRNA_m5C:0.999536712273779 35938 chr12 104492139 104492139 1 + C T SKCM 104492140 + 104492120 104492160 41 GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG GAAAGAGACTCCTTCAAATTCAGTGGCCACAGTGAAAGCGG < 41bp 1 0.582520101369266 1 0.560189485549927 experiment 0.834959797261469 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104492140 chr12:104492139 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_36299 0 0 1 0 1 Cytosol 1 0.500231646524437 0.879621028900146 0.999536706951127 hm5C_site_35938 DeepMRMD:0.879621028900146;iRNA_m5C:0.999536706951127 35939 chr1 161199501 161199501 1 + C T SKCM 161199507 + 161199487 161199527 41 GGCTCCCTTTGAACCCGGCCCAATCTTTGGTCCCAGCATTT GGCTCCCTTTGAACTCGGCCCAATCTTTGGTCCCAGCATTT < 41bp 1 0.043821783567088 1 0.0767340362071991 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NR1I3 ENSG00000143257 CDS Human protein_coding chr1:161199507 chr1:161199501 nonsynonymous SNV 0.000 2 15 hm5C_associated_SNPs_36300 0 0 1 0 0 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_35939 DeepMRMD:1;iRNA_m5C:0.999536712157815 35940 chr21 46900038 46900038 1 + C T SKCM 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGTCCCCAGGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0563877953301571 1 0.0442568063735962 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900038 nonsynonymous SNV 0.800 4 11 hm5C_associated_SNPs_36302 0 0 1 0 2 Nucleus 1 0.500231643920929 1 0.999536712158143 hm5C_site_35940 DeepMRMD:1;iRNA_m5C:0.999536712158143 35941 chr19 45535846 45535846 1 + C T SKCM 45535862 + 45535842 45535882 41 TTCTCCCAGGCCGACGTGCACCGCCAGATTGCCATTGTGTT TTCTTCCAGGCCGACGTGCACCGCCAGATTGCCATTGTGTT < 41bp 1 0.0914500413515334 1 0.105074971914291 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RELB ENSG00000104856 CDS Human protein_coding chr19:45535862 chr19:45535846 nonsynonymous SNV 0.990 5 5 hm5C_associated_SNPs_36303 0 0 1 0 1 Cytosol 1 0.500228849813963 1 0.999542300372075 hm5C_site_35941 DeepMRMD:1;iRNA_m5C:0.999542300372075 35942 chr19 50285871 50285871 1 + C T SKCM 50285882 + 50285862 50285902 41 TGACCTGGCCAGCCGCAACCCCACCTTCATGTGCCTGGCCC TGACCTGGCTAGCCGCAACCCCACCTTCATGTGCCTGGCCC < 41bp 1 0.2418554534482 1 0.0644524097442627 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50285882 chr19:50285871 synonymous SNV . 0 10 hm5C_associated_SNPs_36304 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35942 DeepMRMD:1;iRNA_m5C:0.999536712157815 35943 chr17 75398220 75398220 1 + C T SKCM 75398205 + 75398185 75398225 41 TCCACCCCACCCCGGAGGGTCCAGACTCCCCTACTCCGAGC TCCACCCCACCCCGGAGGGTCCAGACTCCCCTACTTCGAGC < 41bp 1 0.32356665989552 1 0.243051707744598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 CDS Human protein_coding chr17:75398205 chr17:75398220 synonymous SNV . 0 36 hm5C_associated_SNPs_36305 0 0 1 0 0 Ribosome 1 0.50023164366926 1 0.99953671266148 hm5C_site_35943 DeepMRMD:1;iRNA_m5C:0.99953671266148 35944 chr21 46900039 46900039 1 + C T SKCM 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCTCCCAGGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0458634457470133 1 0.0569009184837341 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900039 nonsynonymous SNV 0.793 2 12 hm5C_associated_SNPs_36306 0 0 1 0 2 Nucleus 1 0.500231643922237 1 0.999536712155527 hm5C_site_35944 DeepMRMD:1;iRNA_m5C:0.999536712155527 35945 chrX 70516441 70516441 1 + C T SKCM 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCTGTGACTGTGGAGCTCATGGACCAGTTAGATGAT < 41bp 1 0.260317999581776 1 0.106545180082321 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516441 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_36307 0 0 1 0 2 Nucleus 1 0.500231619152518 1 0.999536761694965 hm5C_site_35945 DeepMRMD:1;iRNA_m5C:0.999536761694965 35946 chr15 25222160 25222160 1 + G A SKCM 25222166 + 25222146 25222186 41 TGTCCGAGGAGTTGGGGGACCATCCCAGCAGGTGAGGAACC TGTCCGAGGAGTTGAGGGACCATCCCAGCAGGTGAGGAACC < 41bp 1 0.13006514616044 1 0.159327447414398 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222166 chr15:25222160 nonsynonymous SNV 0.967 3 15 hm5C_associated_SNPs_36308 0 0 1 1 1 Cytosol 1 0.500231627142415 1 0.99953674571517 hm5C_site_35946 DeepMRMD:1;iRNA_m5C:0.99953674571517 35947 chr5 15937001 15937001 1 + G A SKCM 15937013 + 15936993 15937033 41 CACGGTGTGGAGTACCTCGCCAAGAACTGCACCAAACTCAA CACGGTGTAGAGTACCTCGCCAAGAACTGCACCAAACTCAA < 41bp 1 0.525840903360568 1 0.48293924331665 experiment 0.948318193278865 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXL7 ENSG00000183580 CDS Human protein_coding chr5:15937013 chr5:15937001 synonymous SNV . 0 9 hm5C_associated_SNPs_36309 0 0 0 0 0 exosome 1 0.500231643831449 1 0.999536712337102 hm5C_site_35947 DeepMRMD:1;iRNA_m5C:0.999536712337102 35948 chr12 112910842 112910842 1 + C T SKCM 112910843 + 112910823 112910863 41 AGATATAAAAACATCCTGCCCTGTAAGTATCAATATTCCGC AGATATAAAAACATCCTGCTCTGTAAGTATCAATATTCCGC < 41bp 1 0.334995310265961 1 0.054923415184021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112910843 chr12:112910842 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_36310 0 0 0 0 2 Ribosome 1 0.500231643915362 1 0.999536712169275 hm5C_site_35948 DeepMRMD:1;iRNA_m5C:0.999536712169275 35949 chr18 46284667 46284667 1 + T C SKCM 46284660 + 46284640 46284680 41 CCCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGT CCCCACAGCAGTCAGGGGGGCCAGAGGCTGAGACAAAACGT < 41bp 1 0.273423141669126 1 0.470515102148056 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284660 chr18:46284667 nonsynonymous SNV 0.140 0 28 hm5C_associated_SNPs_36311 0 0 0 0 0 Cytosol 1 0.500231643919989 1 0.999536712160023 hm5C_site_35949 DeepMRMD:1;iRNA_m5C:0.999536712160023 35950 chr18 46284667 46284667 1 + T C SKCM 46284661 + 46284641 46284681 41 CCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGTA CCCACAGCAGTCAGGGGGGCCAGAGGCTGAGACAAAACGTA < 41bp 1 0.273072478923642 1 0.701431930065155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284661 chr18:46284667 nonsynonymous SNV 0.140 0 27 hm5C_associated_SNPs_36312 0 0 0 0 0 Cytosol 1 0.500231643905812 0.59713613986969 0.999536712188375 hm5C_site_35950 DeepMRMD:0.59713613986969;iRNA_m5C:0.999536712188375 35951 chr4 41652434 41652434 1 + G A SKCM 41652424 + 41652404 41652444 41 TTATAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGT TTATAGGTAGACGGGAAAGTCAGTGTGAATAGAGAGACGGT < 41bp 1 0.363499537882774 1 0.473977267742157 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41652424 chr4:41652434 nonsynonymous SNV 0.938 4 31 hm5C_associated_SNPs_36313 0 0 1 0 1 Nucleus 1 0.500231643921088 1 0.999536712157824 hm5C_site_35951 DeepMRMD:1;iRNA_m5C:0.999536712157824 35952 chr10 123845440 123845440 1 + G A SKCM 123845420 + 123845400 123845440 41 GCTGCTGAGACTGGTGGCAGCGCTGGTGCAGGAGACCCAGG GCTGCTGAGACTGGTGGCAGCGCTGGTGCAGGAGACCCAGA < 41bp 1 0.36939556458771 1 0.774698615074158 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TACC2 ENSG00000138162 CDS Human protein_coding chr10:123845420 chr10:123845440 nonsynonymous SNV 0.001 1 41 hm5C_associated_SNPs_36314 0 0 0 0 0 Cytoplasm 1 0.500231626474218 0.450602769851684 0.999536747051565 hm5C_site_35952 DeepMRMD:0.450602769851684;iRNA_m5C:0.999536747051565 35953 chr10 73056476 73056476 1 + C T SKCM 73056491 + 73056471 73056511 41 TATTCCAGCTGCATACCACTCTGGCAGAGGTGAGGGAAGTC TATTCTAGCTGCATACCACTCTGGCAGAGGTGAGGGAAGTC < 41bp 1 0.440326579521228 1 0.444851607084274 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNC5B ENSG00000107731 CDS Human protein_coding chr10:73056491 chr10:73056476 stopgain 0.998 1 6 hm5C_associated_SNPs_36315 0 0 1 0 1 nucleoplasm 1 0.500231643923507 1 0.999536712152986 hm5C_site_35953 DeepMRMD:1;iRNA_m5C:0.999536712152986 35954 chr3 9489407 9489407 1 + C T SKCM 9489393 + 9489373 9489413 41 ATTGCTGCAGAAAAACTAGTCCCCAAGCCACCTCCAGCAAA ATTGCTGCAGAAAAACTAGTCCCCAAGCCACCTCTAGCAAA < 41bp 1 0.495062420559232 1 0.182265192270279 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9489393 chr3:9489407 nonsynonymous SNV 1.000 5 35 hm5C_associated_SNPs_36316 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_35954 DeepMRMD:1;iRNA_m5C:0.999536712157815 35955 chrX 7171306 7171306 1 + G A SKCM 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCAAACATCATCCTGGTGATGGCTGACGA < 41bp 1 0.292431980773345 1 0.0695810616016388 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171306 synonymous SNV . 0 15 hm5C_associated_SNPs_36317 0 0 1 2 1 Cytosol 1 0.500231644707713 1 0.999536710584575 hm5C_site_35955 DeepMRMD:1;iRNA_m5C:0.999536710584575 35956 chr5 156816274 156816274 1 + C T SKCM 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATTCTGAC < 41bp 1 0.264374020424774 1 0.652402877807617 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816274 synonymous SNV . 0 36 hm5C_associated_SNPs_36318 0 0 1 0 1 Cytosol 1 0.50023152535968 0.695194244384766 0.99953694928064 hm5C_site_35956 DeepMRMD:0.695194244384766;iRNA_m5C:0.99953694928064 35957 chr11 126143258 126143258 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTTCCCTGGACCTCCGGTTCA < 41bp 1 0.348280727965931 1 0.0477394163608551 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143258 nonsynonymous SNV 0.058 1 23 hm5C_associated_SNPs_36319 0 0 1 0 3 Ribosome 1 0.500231643915715 1 0.999536712168571 hm5C_site_35957 DeepMRMD:1;iRNA_m5C:0.999536712168571 35958 chrX 73046879 73046879 1 + C T SKCM 73046871 - 73046851 73046891 41 GAGGACTAAGATGGAAAGCCCATGTTCCAAGATAGATAGAA GAGGACTAAGATAGAAAGCCCATGTTCCAAGATAGATAGAA < 41bp 1 0.0805013161208821 1 0.0731796622276306 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046871 chrX:73046879 . . 0 13 hm5C_associated_SNPs_36320 0 0 1 0 0 unknown 1 0.500231643920892 1 0.999536712158215 hm5C_site_35958 DeepMRMD:1;iRNA_m5C:0.999536712158215 35959 chrX 73046879 73046879 1 + C T SKCM 73046873 - 73046853 73046893 41 CCGAGGACTAAGATGGAAAGCCCATGTTCCAAGATAGATAG CCGAGGACTAAGATAGAAAGCCCATGTTCCAAGATAGATAG < 41bp 1 0.156605166848055 1 0.0538758337497711 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046873 chrX:73046879 . . 0 15 hm5C_associated_SNPs_36321 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_35959 DeepMRMD:1;iRNA_m5C:0.999536712157815 35960 chrX 73046879 73046879 1 + C T SKCM 73046893 - 73046873 73046913 41 GATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGC GATGGTTTGAGACTTGAGACCCGAGGACTAAGATAGAAAGC < 41bp 1 0.185583134598403 1 0.468757331371307 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046893 chrX:73046879 . . 0 35 hm5C_associated_SNPs_36322 0 0 1 0 0 unknown 1 0.500231643894517 1 0.999536712210966 hm5C_site_35960 DeepMRMD:1;iRNA_m5C:0.999536712210966 35961 chrX 73046879 73046879 1 + C T SKCM 73046894 - 73046874 73046914 41 AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAG AGATGGTTTGAGACTTGAGACCCGAGGACTAAGATAGAAAG < 41bp 1 0.407775456495304 1 0.172441363334656 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046894 chrX:73046879 . . 0 36 hm5C_associated_SNPs_36323 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_35961 DeepMRMD:1;iRNA_m5C:0.999536712157815 35962 chr11 126143259 126143259 1 + C T SKCM 126143256 + 126143236 126143276 41 CCTGGCCGTAGTCGATGCTCCTCCCCTGGACCTCCGGTTCA CCTGGCCGTAGTCGATGCTCCTCTCCTGGACCTCCGGTTCA < 41bp 1 0.37951420299069 1 0.0509857833385468 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126143256 chr11:126143259 nonsynonymous SNV 0.046 2 24 hm5C_associated_SNPs_36324 0 0 1 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35962 DeepMRMD:1;iRNA_m5C:0.999536712157815 35963 chr19 36370325 36370325 1 + C T SKCM 36370340 + 36370320 36370360 41 CGCTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC CGCTTTCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC < 41bp 1 0.454345918014297 1 0.0999417901039124 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370340 chr19:36370325 synonymous SNV . 0 6 hm5C_associated_SNPs_36325 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644117255 1 0.999536711765489 hm5C_site_35963 DeepMRMD:1;iRNA_m5C:0.999536711765489 35964 chr14 23944952 23944952 1 + C T SKCM 23944972 + 23944952 23944992 41 CGTTTTAAGCCTCATCCCAGCAATATGATGAGCAAGGTAAG TGTTTTAAGCCTCATCCCAGCAATATGATGAGCAAGGTAAG < 41bp 1 0.353313926969129 1 0.45010244846344 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NGDN ENSG00000129460 CDS Human protein_coding chr14:23944972 chr14:23944952 nonsynonymous SNV 0.990 1 1 hm5C_associated_SNPs_36326 0 0 1 0 2 Cytosol 1 0.50023164615054 1 0.999536707698919 hm5C_site_35964 DeepMRMD:1;iRNA_m5C:0.999536707698919 35965 chr17 40716081 40716081 1 + C T SKCM 40716079 + 40716059 40716099 41 TCCTTGACTTTTGATGTCATCCCCCTGCTGGACCCCTATGG TCCTTGACTTTTGATGTCATCCTCCTGCTGGACCCCTATGG < 41bp 1 0.0787377694989617 1 0.264262139797211 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40716079 chr17:40716081 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_36327 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35965 DeepMRMD:1;iRNA_m5C:0.999536712157815 35966 chr17 75398213 75398213 1 + C T SKCM 75398205 + 75398185 75398225 41 TCCACCCCACCCCGGAGGGTCCAGACTCCCCTACTCCGAGC TCCACCCCACCCCGGAGGGTCCAGACTCTCCTACTCCGAGC < 41bp 1 0.369190278443374 1 0.152830004692078 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 CDS Human protein_coding chr17:75398205 chr17:75398213 nonsynonymous SNV 0.417 2 29 hm5C_associated_SNPs_36328 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_35966 DeepMRMD:1;iRNA_m5C:0.999536712157815 35967 chr17 78082402 78082402 1 + C T SKCM 78082400 + 78082380 78082420 41 AACATGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGG AACATGACCAGGGCCCACTTCCTCCTGGTGAGTTGGGGTGG < 41bp 1 0.113498733129564 1 0.389977753162384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082400 chr17:78082402 nonsynonymous SNV 0.938 5 23 hm5C_associated_SNPs_36330 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643621125 1 0.99953671275775 hm5C_site_35967 DeepMRMD:1;iRNA_m5C:0.99953671275775 35968 chr17 78082402 78082402 1 + C T SKCM 78082404 + 78082384 78082424 41 TGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC TGACCAGGGCCCACTTCCTCCTGGTGAGTTGGGGTGGTGGC < 41bp 1 0.612664654710813 1 0.434816122055054 experiment 0.774670690578373 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082404 chr17:78082402 nonsynonymous SNV 0.938 5 19 hm5C_associated_SNPs_36331 0 0 0 0 1 Endoplasmic reticulum 1 0.486020048943136 1 1 hm5C_site_35968 DeepMRMD:1;iRNA_m5C:1 35969 chr1 233489663 233489663 1 + C T SKCM 233489675 + 233489655 233489695 41 GCCCATTCCATCCACCTGCCCTGAGCCGTTTGCCAAGCTCA GCCCATTCTATCCACCTGCCCTGAGCCGTTTGCCAAGCTCA < 41bp 1 0.355158530629972 1 0.138640016317368 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233489675 chr1:233489663 nonsynonymous SNV 0.963 5 9 hm5C_associated_SNPs_36332 0 0 1 0 1 unknown 1 0.500231643938527 1 0.999536712122946 hm5C_site_35969 DeepMRMD:1;iRNA_m5C:0.999536712122946 35970 chr17 80521235 80521235 1 + C T SKCM 80521253 + 80521233 80521273 41 CACATTCAGGTTCCCGAGCACAAACATCAAGATAACGTTCA CATATTCAGGTTCCCGAGCACAAACATCAAGATAACGTTCA < 41bp 1 0.115837178653992 1 0.108410328626633 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80521253 chr17:80521235 nonsynonymous SNV 0.959 2 3 hm5C_associated_SNPs_36333 0 0 1 0 1 Cytosol 1 0.500231643656758 1 0.999536712686484 hm5C_site_35970 DeepMRMD:1;iRNA_m5C:0.999536712686484 35971 chr19 56153915 56153915 1 + C T SKCM 56153916 + 56153896 56153936 41 CCACCCCACCCTCGGTCCTCCTCTCCGGAGGCCATGGACCC CCACCCCACCCTCGGTCCTTCTCTCCGGAGGCCATGGACCC < 41bp 1 0.15118193373222 1 0.229142040014267 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF580 ENSG00000213015 CDS Human protein_coding chr19:56153916 chr19:56153915 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_36334 0 0 1 0 1 nucleus 1 0.500231643919336 1 0.999536712161329 hm5C_site_35971 DeepMRMD:1;iRNA_m5C:0.999536712161329 35972 chr6 28333681 28333681 1 + C T SKCM 28333663 + 28333643 28333683 41 TGTGATGACTGTGGGAAGACCTTCAGCCAGAGCTGCAGCCT TGTGATGACTGTGGGAAGACCTTCAGCCAGAGCTGCAGTCT < 41bp 1 0.672105142492803 1 0.372071385383606 experiment 0.655789715014393 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28333663 chr6:28333681 synonymous SNV . 0 39 hm5C_associated_SNPs_36335 0 0 0 0 0 exosome 1 0.500231584785876 1 0.999536830428248 hm5C_site_35972 DeepMRMD:1;iRNA_m5C:0.999536830428248 35973 chr7 74103493 74103493 1 + G A SKCM 74103486 + 74103466 74103506 41 GCCCAAGTTGCAATGTCCACCCTCCCCGTTGAAGATGAGGA GCCCAAGTTGCAATGTCCACCCTCCCCATTGAAGATGAGGA < 41bp 1 0.027559530726698 1 0.138553470373154 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF2I ENSG00000077809 CDS Human other chr7:74103486 chr7:74103493 nonsynonymous SNV 0.682 0 28 hm5C_associated_SNPs_36336 0 0 1 0 2 Cytosol 1 0.50023164396226 1 0.99953671207548 hm5C_site_35973 DeepMRMD:1;iRNA_m5C:0.99953671207548 35974 chr7 74103493 74103493 1 + G A SKCM 74103487 + 74103467 74103507 41 CCCAAGTTGCAATGTCCACCCTCCCCGTTGAAGATGAGGAG CCCAAGTTGCAATGTCCACCCTCCCCATTGAAGATGAGGAG < 41bp 1 0.391033662694378 1 0.144692152738571 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2I ENSG00000077809 CDS Human other chr7:74103487 chr7:74103493 nonsynonymous SNV 0.682 0 27 hm5C_associated_SNPs_36337 0 0 1 0 2 Cytosol 1 0.500231643921095 1 0.99953671215781 hm5C_site_35974 DeepMRMD:1;iRNA_m5C:0.99953671215781 35975 chr17 72764748 72764748 1 + C T SKCM 72764746 + 72764726 72764766 41 GAAACGCAGCAGCAAACGGGCCCCGCAGATGGACTGGAGCA GAAACGCAGCAGCAAACGGGCCTCGCAGATGGACTGGAGCA < 41bp 1 0.0809520770446978 1 0.0971950590610504 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72764746 chr17:72764748 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_36338 0 0 1 0 0 Ribosome 1 0.500231636652948 1 0.999536726694105 hm5C_site_35975 DeepMRMD:1;iRNA_m5C:0.999536726694105 35976 chr19 14512303 14512303 1 + G T SKCM 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTTAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.268093565722974 1 0.0529019236564636 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512303 stopgain 0.005 0 4 hm5C_associated_SNPs_36339 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35976 DeepMRMD:1;iRNA_m5C:0.999536712157815 35977 chr15 22993144 22993144 1 + G A SKCM 22993125 + 22993105 22993145 41 CGGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGA CGGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCAA < 41bp 1 0.257214508561802 1 0.090857058763504 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993125 chr15:22993144 nonsynonymous SNV . 0 40 hm5C_associated_SNPs_36340 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_35977 DeepMRMD:1;iRNA_m5C:0.999536712157815 35978 chr15 22993144 22993144 1 + G A SKCM 22993126 + 22993106 22993146 41 GGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCGAG GGGAGGTGGGGAACGCCATCCTCTTCTGCCTGCTCATCAAG < 41bp 1 0.384326817063206 1 0.345474392175674 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22993126 chr15:22993144 nonsynonymous SNV . 0 39 hm5C_associated_SNPs_36341 0 0 1 0 0 Cytosol 1 0.500231644010781 1 0.999536711978438 hm5C_site_35978 DeepMRMD:1;iRNA_m5C:0.999536711978438 35979 chr19 14512302 14512302 1 + T C SKCM 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTCGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.241054916948652 1 0.0478146970272064 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512302 synonymous SNV . 0 3 hm5C_associated_SNPs_36342 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35979 DeepMRMD:1;iRNA_m5C:0.999536712157815 35980 chr3 49736478 49736478 1 + C T SKCM 49736459 + 49736439 49736479 41 TTGAGAACCTGTCCAGGGGCCTGGGTATGGCCTACTTCCCA TTGAGAACCTGTCCAGGGGCCTGGGTATGGCCTACTTCCTA < 41bp 1 0.596742000234492 1 0.241994440555573 experiment 0.806515999531016 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49736459 chr3:49736478 nonsynonymous SNV 1.000 5 40 hm5C_associated_SNPs_36343 0 0 1 0 1 Nucleus 1 0.500231643916524 1 0.999536712166952 hm5C_site_35980 DeepMRMD:1;iRNA_m5C:0.999536712166952 35981 chr16 83992993 83992993 1 + C T SKCM 83992986 + 83992966 83993006 41 CTCACCGAGGCCCCGGGGGTCTCCATCCTGGACCAGGTGGG CTCACCGAGGCCCCGGGGGTCTCCATCTTGGACCAGGTGGG < 41bp 1 0.608765343524285 1 0.867018342018127 experiment 0.78246931295143 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83992986 chr16:83992993 synonymous SNV . 0 28 hm5C_associated_SNPs_36344 0 0 0 0 1 chromatin 1 0.500231640603957 0.265963315963746 0.999536718792086 hm5C_site_35981 DeepMRMD:0.265963315963746;iRNA_m5C:0.999536718792086 35982 chr7 142458423 142458423 1 + G A SKCM 142458409 + 142458389 142458429 41 TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATG TCCCATCTCCACTCCAGTTGCTGCCCCCTTTGATAATGATG < 41bp 1 0.0536258914185841 1 0.108094543218613 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458409 chr7:142458423 nonsynonymous SNV 0.157 1 35 hm5C_associated_SNPs_36345 0 0 0 0 1 Cytosol 1 0.500234074671448 1 0.999531850657104 hm5C_site_35982 DeepMRMD:1;iRNA_m5C:0.999531850657104 35983 chr7 142458423 142458423 1 + G A SKCM 142458412 + 142458392 142458432 41 CATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACA CATCTCCACTCCAGTTGCTGCCCCCTTTGATAATGATGACA < 41bp 1 0.0186152138938693 1 0.186420798301697 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458412 chr7:142458423 nonsynonymous SNV 0.157 1 32 hm5C_associated_SNPs_36346 0 0 0 0 1 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_35983 DeepMRMD:1;iRNA_m5C:0.99953671215782 35984 chr7 142458423 142458423 1 + G A SKCM 142458413 + 142458393 142458433 41 ATCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAA ATCTCCACTCCAGTTGCTGCCCCCTTTGATAATGATGACAA < 41bp 1 0.0655060412460687 1 0.12497290968895 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458413 chr7:142458423 nonsynonymous SNV 0.157 1 31 hm5C_associated_SNPs_36347 0 0 0 0 1 Cytosol 1 0.500231645822968 1 0.999536708354064 hm5C_site_35984 DeepMRMD:1;iRNA_m5C:0.999536708354064 35985 chr7 142458423 142458423 1 + G A SKCM 142458414 + 142458394 142458434 41 TCTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAG TCTCCACTCCAGTTGCTGCCCCCTTTGATAATGATGACAAG < 41bp 1 0.0264657715079147 1 0.121429175138474 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458414 chr7:142458423 nonsynonymous SNV 0.157 1 30 hm5C_associated_SNPs_36348 0 0 0 0 1 Cytosol 1 0.500231643920877 1 0.999536712158246 hm5C_site_35985 DeepMRMD:1;iRNA_m5C:0.999536712158246 35986 chr7 142458423 142458423 1 + G A SKCM 142458415 + 142458395 142458435 41 CTCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGA CTCCACTCCAGTTGCTGCCCCCTTTGATAATGATGACAAGA < 41bp 1 0.00280536677567591 1 0.0756044387817383 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458415 chr7:142458423 nonsynonymous SNV 0.157 1 29 hm5C_associated_SNPs_36349 0 0 0 0 1 Cytosol 1 0.500231665731203 1 0.999536668537594 hm5C_site_35986 DeepMRMD:1;iRNA_m5C:0.999536668537594 35987 chr7 142458423 142458423 1 + G A SKCM 142458416 + 142458396 142458436 41 TCCACTCCAGTTGCTGCCCCCTTTGATGATGATGACAAGAT TCCACTCCAGTTGCTGCCCCCTTTGATAATGATGACAAGAT < 41bp 1 0.0419390672836784 1 0.0673637390136719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458416 chr7:142458423 nonsynonymous SNV 0.157 1 28 hm5C_associated_SNPs_36350 0 0 0 0 1 Cytosol 1 0.500231643893515 1 0.999536712212969 hm5C_site_35987 DeepMRMD:1;iRNA_m5C:0.999536712212969 35988 chr7 142458423 142458423 1 + G A SKCM 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATAATGATGACAAGATCGTTGGGGGCTACAA < 41bp 1 0.630116945474428 1 0.311188101768494 experiment 0.739766109051143 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458423 nonsynonymous SNV 0.157 1 13 hm5C_associated_SNPs_36351 0 0 0 0 1 Cytosol 1 0.500231643921796 1 0.999536712156408 hm5C_site_35988 DeepMRMD:1;iRNA_m5C:0.999536712156408 35989 chr7 142458423 142458423 1 + G A SKCM 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATAATGATGACAAGATCGTTGGGGGCTACAACTGTGA < 41bp 1 0.234410097658468 1 0.140677601099014 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458423 nonsynonymous SNV 0.157 1 7 hm5C_associated_SNPs_36352 0 0 0 0 1 Cytosol 1 0.500231618538629 1 0.999536762922743 hm5C_site_35989 DeepMRMD:1;iRNA_m5C:0.999536762922743 35990 chr7 44806154 44806154 1 + C T SKCM 44806140 + 44806120 44806160 41 CAAACCCTCCCCCAGCGTCCCGGCAGTCCTTGGGCCAAGCG CAAACCCTCCCCCAGCGTCCCGGCAGTCCTTGGGTCAAGCG < 41bp 1 0.616619006797984 1 0.326548904180527 experiment 0.766761986404031 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806140 chr7:44806154 synonymous SNV . 0 35 hm5C_associated_SNPs_36353 0 0 1 0 0 Cytosol 1 0.500231643921089 1 0.999536712157822 hm5C_site_35990 DeepMRMD:1;iRNA_m5C:0.999536712157822 35991 chr13 111156522 111156522 1 + G A SKCM 111156524 + 111156504 111156544 41 GGGCTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTG GGGCTCCAGGGAAAGCTGAGCCCCAAGGAAGAGGTGGTGTG < 41bp 1 0.139905831582334 1 0.116137146949768 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156524 chr13:111156522 nonsynonymous SNV 0.981 4 19 hm5C_associated_SNPs_36354 0 0 0 0 2 Cytosol 1 0.500231644077461 1 0.999536711845078 hm5C_site_35991 DeepMRMD:1;iRNA_m5C:0.999536711845078 35992 chr13 111156522 111156522 1 + G A SKCM 111156527 + 111156507 111156547 41 CTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTGTCT CTCCAGGGAAAGCTGAGCCCCAAGGAAGAGGTGGTGTGTCT < 41bp 1 0.249300406829414 1 0.34833300113678 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111156527 chr13:111156522 nonsynonymous SNV 0.981 4 16 hm5C_associated_SNPs_36355 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_35992 DeepMRMD:1;iRNA_m5C:0.999536712157815 35993 chr7 66660289 66660289 1 + G A SKCM 66660306 + 66660286 66660326 41 CACGAACACTCTAATTGCCTCCTGATAGCACACAGAAAGGT CACAAACACTCTAATTGCCTCCTGATAGCACACAGAAAGGT < 41bp 1 0.137141518131716 1 0.274556696414948 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66660306 chr7:66660289 nonsynonymous SNV 0.989 0 4 hm5C_associated_SNPs_36356 0 0 0 0 1 Endoplasmic reticulum 1 0.500231647287452 1 0.999536705425097 hm5C_site_35993 DeepMRMD:1;iRNA_m5C:0.999536705425097 35994 chr19 50339161 50339161 1 + G A SKCM 50339146 + 50339126 50339166 41 CTCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAAC CTCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGACCAAC < 41bp 1 0.382087516271515 1 0.121413469314575 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339146 chr19:50339161 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_36358 0 0 1 0 1 chromatin 1 0.500231643914352 1 0.999536712171297 hm5C_site_35994 DeepMRMD:1;iRNA_m5C:0.999536712171297 35995 chr19 50339161 50339161 1 + G A SKCM 50339147 + 50339127 50339167 41 TCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACC TCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGACCAACC < 41bp 1 0.129934669676932 1 0.0744988322257996 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339147 chr19:50339161 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_36359 0 0 1 0 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_35995 DeepMRMD:1;iRNA_m5C:0.999536712157818 35996 chr19 50339161 50339161 1 + G A SKCM 50339148 + 50339128 50339168 41 CCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCC CCTGGACCCATCCTTCGGCCCCAGAACCCTGGGACCAACCC < 41bp 1 0.377144374861274 1 0.113219499588013 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339148 chr19:50339161 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_36360 0 0 1 0 1 chromatin 1 0.500231643944004 1 0.999536712111991 hm5C_site_35996 DeepMRMD:1;iRNA_m5C:0.999536712111991 35997 chr19 50339161 50339161 1 + G A SKCM 50339149 + 50339129 50339169 41 CTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCCT CTGGACCCATCCTTCGGCCCCAGAACCCTGGGACCAACCCT < 41bp 1 0.422572148623459 1 0.269625246524811 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339149 chr19:50339161 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_36361 0 0 1 0 1 chromatin 1 0.50023164386097 1 0.99953671227806 hm5C_site_35997 DeepMRMD:1;iRNA_m5C:0.99953671227806 35998 chr19 50339161 50339161 1 + G A SKCM 50339162 + 50339142 50339182 41 TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC TCGGCCCCAGAACCCTGGGACCAACCCTCAGCTGCGAAGCC < 41bp 1 0.0201920684975995 1 0.0230116844177246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339162 chr19:50339161 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_36362 0 0 1 0 1 chromatin 1 0.500231663813161 1 0.999536672373678 hm5C_site_35998 DeepMRMD:1;iRNA_m5C:0.999536672373678 35999 chr19 50339161 50339161 1 + G A SKCM 50339163 + 50339143 50339183 41 CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT CGGCCCCAGAACCCTGGGACCAACCCTCAGCTGCGAAGCCT < 41bp 1 0.143150497029389 1 0.0487706959247589 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339163 chr19:50339161 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_36363 0 0 1 0 1 chromatin 1 0.500231643931959 1 0.999536712136083 hm5C_site_35999 DeepMRMD:1;iRNA_m5C:0.999536712136083 36000 chr22 32275641 32275641 1 + C T SKCM 32275660 + 32275640 32275680 41 TCCTGCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGT TTCTGCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGT < 41bp 1 0.499835543268575 1 0.20054417848587 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275660 chr22:32275641 nonsynonymous SNV . 0 2 hm5C_associated_SNPs_36364 0 0 0 0 1 chromatin 1 0.500231643921094 1 0.999536712157812 hm5C_site_36000 DeepMRMD:1;iRNA_m5C:0.999536712157812 36001 chr19 19308364 19308364 1 + C T SKCM 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGACGAGCGCGGTTTCACCCCCCTCATCTGGGCCTCCGC < 41bp 1 0.353125303089394 1 0.0950374603271484 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308364 synonymous SNV . 0 15 hm5C_associated_SNPs_36365 0 0 1 0 2 Ribosome 1 0.500231643915982 1 0.999536712168037 hm5C_site_36001 DeepMRMD:1;iRNA_m5C:0.999536712168037 36002 chr19 19308364 19308364 1 + C T SKCM 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGACGAGCGCGGTTTCACCCCCCTCATCTGGGCCTCCGCC < 41bp 1 0.288088347040477 1 0.11310550570488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308364 synonymous SNV . 0 14 hm5C_associated_SNPs_36366 0 0 1 0 2 Ribosome 1 0.500231681922915 1 0.99953663615417 hm5C_site_36002 DeepMRMD:1;iRNA_m5C:0.99953663615417 36003 chr12 113400489 113400489 1 + C T SKCM 113400499 + 113400479 113400519 41 AAGGACCAGCCCCTGCCTCTCTGCCCCCAGCCTATGCCCTG AAGGACCAGCTCCTGCCTCTCTGCCCCCAGCCTATGCCCTG < 41bp 1 0.392495517129285 1 0.372236788272858 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113400499 chr12:113400489 synonymous SNV . 0 11 hm5C_associated_SNPs_36367 0 0 0 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_36003 DeepMRMD:1;iRNA_m5C:0.999536712157812 36004 chr8 27516389 27516389 1 + C T SKCM 27516409 + 27516389 27516429 41 CCACGGGATCCAGCGGAAGACAGACGAGGAGACCCTGACCC TCACGGGATCCAGCGGAAGACAGACGAGGAGACCCTGACCC < 41bp 1 0.619986092800831 1 0.739807486534119 experiment 0.760027814398339 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27516409 chr8:27516389 synonymous SNV . 0 1 hm5C_associated_SNPs_36368 0 0 1 0 0 Cytosol 1 0.500231643385492 0.520385026931762 0.999536713229017 hm5C_site_36004 DeepMRMD:0.520385026931762;iRNA_m5C:0.999536713229017 36005 chr19 38572456 38572456 1 + C T SKCM 38572457 + 38572437 38572477 41 GGCGTGCGCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGA GGCGTGCGCGCAAGGGTGGTCGACTGGCCGCCCAAGCGGGA < 41bp 1 0.239003257970977 1 0.369279146194458 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572457 chr19:38572456 nonsynonymous SNV 0.910 5 20 hm5C_associated_SNPs_36369 0 0 0 0 0 Ribosome 1 0.500231670891535 1 0.999536658216929 hm5C_site_36005 DeepMRMD:1;iRNA_m5C:0.999536658216929 36006 chr19 38572456 38572456 1 + C T SKCM 38572464 + 38572444 38572484 41 GCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTG GCGCAAGGGTGGTCGACTGGCCGCCCAAGCGGGAGGCCCTG < 41bp 1 0.136227987126098 1 0.181265324354172 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572464 chr19:38572456 nonsynonymous SNV 0.910 5 13 hm5C_associated_SNPs_36370 0 0 0 0 0 Ribosome 1 0.500231643921087 1 0.999536712157827 hm5C_site_36006 DeepMRMD:1;iRNA_m5C:0.999536712157827 36007 chr19 38572456 38572456 1 + C T SKCM 38572465 + 38572445 38572485 41 CGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGA CGCAAGGGTGGTCGACTGGCCGCCCAAGCGGGAGGCCCTGA < 41bp 1 0.190513231345264 1 0.140547037124634 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572465 chr19:38572456 nonsynonymous SNV 0.910 5 12 hm5C_associated_SNPs_36371 0 0 0 0 0 Ribosome 1 0.500231644239336 1 0.999536711521329 hm5C_site_36007 DeepMRMD:1;iRNA_m5C:0.999536711521329 36008 chr19 38572456 38572456 1 + C T SKCM 38572467 + 38572447 38572487 41 CAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGA CAAGGGTGGTCGACTGGCCGCCCAAGCGGGAGGCCCTGAGA < 41bp 1 0.201972085530502 1 0.406609803438187 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572467 chr19:38572456 nonsynonymous SNV 0.910 5 10 hm5C_associated_SNPs_36372 0 0 0 0 0 Ribosome 1 0.500231643931761 1 0.999536712136477 hm5C_site_36008 DeepMRMD:1;iRNA_m5C:0.999536712136477 36009 chr19 38572456 38572456 1 + C T SKCM 38572468 + 38572448 38572488 41 AAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAG AAGGGTGGTCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAG < 41bp 1 0.0761451370476553 1 0.488958597183228 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572468 chr19:38572456 nonsynonymous SNV 0.910 5 9 hm5C_associated_SNPs_36373 0 0 0 0 0 Ribosome 1 0.500231644114648 1 0.999536711770704 hm5C_site_36009 DeepMRMD:1;iRNA_m5C:0.999536711770704 36010 chr19 38572456 38572456 1 + C T SKCM 38572469 + 38572449 38572489 41 AGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAGA AGGGTGGTCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAGA < 41bp 1 0.233476692962407 1 0.705680310726166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572469 chr19:38572456 nonsynonymous SNV 0.910 5 8 hm5C_associated_SNPs_36374 0 0 0 0 0 Ribosome 1 0.500231642720866 0.588639378547668 0.999536714558268 hm5C_site_36010 DeepMRMD:0.588639378547668;iRNA_m5C:0.999536714558268 36011 chr9 72003127 72003127 1 + C A SKCM 72003140 + 72003120 72003160 41 ACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTGAGAT ACTGGATATGGCTGCAGTGACTCTGAGGAGAGGCTTGAGAT < 41bp 1 0.596603235458229 1 0.375360459089279 experiment 0.806793529083541 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:72003140 chr9:72003127 nonsynonymous SNV 0.994 0 8 hm5C_associated_SNPs_36375 0 0 1 0 1 cytosol 1 0.500231014118345 1 0.999537971763309 hm5C_site_36011 DeepMRMD:1;iRNA_m5C:0.999537971763309 36012 chr11 117280369 117280369 1 + C T SKCM 117280351 + 117280331 117280371 41 CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAGATCCAC CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAGATCTAC < 41bp 1 0.140540354010391 1 0.0324214398860931 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP164 ENSG00000110274 CDS Human protein_coding chr11:117280351 chr11:117280369 nonsynonymous SNV 0.015 1 39 hm5C_associated_SNPs_36376 0 0 0 0 1 Cytosol 1 0.500231365034904 1 0.999537269930192 hm5C_site_36012 DeepMRMD:1;iRNA_m5C:0.999537269930192 36013 chr19 45260400 45260400 1 + C T SKCM 45260397 + 45260377 45260417 41 CCGCTCACCTGGCGTGCGAGCACCGCAGCCCGACCTGCCTG CCGCTCACCTGGCGTGCGAGCACTGCAGCCCGACCTGCCTG < 41bp 1 0.487506757598363 1 0.318842530250549 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45260397 chr19:45260400 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_36377 0 0 0 0 1 chromatin 1 0.500231643921091 1 0.999536712157817 hm5C_site_36013 DeepMRMD:1;iRNA_m5C:0.999536712157817 36014 chr19 11213363 11213363 1 + G A SKCM 11213368 + 11213348 11213388 41 ACCTGCAAATCCGGGGACTTCAGCTGTGGGGGCCGTGTCAA ACCTGCAAATCCGGGAACTTCAGCTGTGGGGGCCGTGTCAA < 41bp 1 0.612715108851848 1 0.730235993862152 experiment 0.774569782296304 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11213368 chr19:11213363 nonsynonymous SNV 0.244 2 16 hm5C_associated_SNPs_36378 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.539528012275696 0.999536712157815 hm5C_site_36014 DeepMRMD:0.539528012275696;iRNA_m5C:0.999536712157815 36015 chr2 189852853 189852853 1 + G A SKCM 189852859 + 189852839 189852879 41 ATCTGGTCATCCTGGTTCCCCTGTAAGTATAGCCATTGGTG ATCTGGTCATCCTGATTCCCCTGTAAGTATAGCCATTGGTG < 41bp 1 0.333410078443271 1 0.0649442374706268 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189852859 chr2:189852853 nonsynonymous SNV 0.980 5 15 hm5C_associated_SNPs_36379 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643929339 1 0.999536712141322 hm5C_site_36015 DeepMRMD:1;iRNA_m5C:0.999536712141322 36016 chr13 50586079 50586079 1 + G A SKCM 50586083 + 50586063 50586103 41 TCTGGTAGGATGTGATGGAGCTGCTTGAAGAAGATCTCACA TCTGGTAGGATGTGATAGAGCTGCTTGAAGAAGATCTCACA < 41bp 1 0.433519269078616 1 0.0494876801967621 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM13 ENSG00000204977 CDS Human protein_coding chr13:50586083 chr13:50586079 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_36380 0 0 1 0 1 Endoplasmic reticulum 1 0.50023626015202 1 0.999527479695959 hm5C_site_36016 DeepMRMD:1;iRNA_m5C:0.999527479695959 36017 chr12 31236892 31236892 1 + C T SKCM 31236904 + 31236884 31236924 41 GTCTTCTTCCTGCGAAGGGGCTGCAGGCACCCCGAGGCCTG GTCTTCTTTCTGCGAAGGGGCTGCAGGCACCCCGAGGCCTG < 41bp 1 0.698444824915741 1 0.3735591173172 experiment 0.603110350168518 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31236904 chr12:31236892 nonsynonymous SNV 0.007 2 9 hm5C_associated_SNPs_36382 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36017 DeepMRMD:1;iRNA_m5C:0.999536712157815 36018 chr7 34125558 34125558 1 + C T SKCM 34125549 + 34125529 34125569 41 GAATCTTGGAGGGTGGAGTCCAATGAGTTCTGCAACAGACC GAATCTTGGAGGGTGGAGTCCAATGAGTTTTGCAACAGACC < 41bp 1 0.11672583993641 1 0.204868018627167 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMPER ENSG00000164619 CDS Human protein_coding chr7:34125549 chr7:34125558 synonymous SNV . 0 30 hm5C_associated_SNPs_36383 0 0 0 0 0 exosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_36018 DeepMRMD:1;iRNA_m5C:0.99953671215781 36019 chr16 3169792 3169792 1 + C T SKCM 3169789 + 3169769 3169809 41 CGGAAGAGCTTCAGCCACCACTCCACGCTGATTCAGCACCA CGGAAGAGCTTCAGCCACCACTCTACGCTGATTCAGCACCA < 41bp 1 0.621360878189786 1 0.947828948497772 experiment 0.757278243620427 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3169789 chr16:3169792 synonymous SNV . 0 24 hm5C_associated_SNPs_36384 0 0 0 0 0 chromatin 1 0.500231407453639 0.104342103004456 0.999537185092721 hm5C_site_36019 DeepMRMD:0.104342103004456;iRNA_m5C:0.999537185092721 36020 chr12 2783710 2783710 1 + A G SKCM 2783718 + 2783698 2783738 41 GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGCGG GCCCTGCAGGGAGCCTAGAACAAGCCAATGAGGAGCTGCGG < 41bp 1 0.36205273994765 1 0.737397313117981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2783718 chr12:2783710 nonsynonymous SNV 0.985 4 13 hm5C_associated_SNPs_36386 0 0 0 0 3 Cytosol 1 0.500231643923208 0.525205373764038 0.999536712153585 hm5C_site_36020 DeepMRMD:0.525205373764038;iRNA_m5C:0.999536712153585 36021 chr3 8579092 8579092 1 + A G SKCM 8579084 + 8579064 8579104 41 AAAGATCCCACTTTTGACACCATCACCTACGAGTGGGCTCC AAAGATCCCACTTTTGACACCATCACCTGCGAGTGGGCTCC < 41bp 1 0.296536869162092 1 0.151864171028137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8579084 chr3:8579092 nonsynonymous SNV 0.990 3 29 hm5C_associated_SNPs_36387 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_36021 DeepMRMD:1;iRNA_m5C:0.999536712157815 36022 chr11 25004817 25004817 1 + C T SKCM 25004826 + 25004806 25004846 41 CTCTAAGCTTCCAGATGCAGCGGCCAAAAGCAAGGTACCTA CTCTAAGCTTCTAGATGCAGCGGCCAAAAGCAAGGTACCTA < 41bp 1 0.271874153395381 1 0.558866858482361 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004826 chr11:25004817 nonsynonymous SNV 0.017 1 12 hm5C_associated_SNPs_36389 0 0 0 0 1 exosome 1 0.500231640323897 0.882266283035278 0.999536719352206 hm5C_site_36022 DeepMRMD:0.882266283035278;iRNA_m5C:0.999536719352206 36023 chr20 32341106 32341106 1 + C T SKCM 32341105 + 32341085 32341125 41 TCCACCCCAGAGCCTGGGCCCCCCTGGGCGTCCCAACCCTG TCCACCCCAGAGCCTGGGCCCTCCTGGGCGTCCCAACCCTG < 41bp 1 0.52221881144459 1 0.159564226865768 experiment 0.95556237711082 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32341105 chr20:32341106 synonymous SNV . 0 22 hm5C_associated_SNPs_36390 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36023 DeepMRMD:1;iRNA_m5C:0.999536712157815 36024 chr19 36142191 36142191 1 + C T SKCM 36142189 + 36142169 36142209 41 AATCAAGAACTACAAGACCGCCCCTTTTGACAGCCGCTTCC AATCAAGAACTACAAGACCGCCTCTTTTGACAGCCGCTTCC < 41bp 1 0.118670529925762 1 0.0698641240596771 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142189 chr19:36142191 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_36391 0 0 1 0 2 Ribosome 1 0.500231645557944 1 0.999536708884112 hm5C_site_36024 DeepMRMD:1;iRNA_m5C:0.999536708884112 36025 chr17 48562205 48562205 1 + C T SKCM 48562204 + 48562184 48562224 41 TGGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACA TGGCAGCAGAGAACCCCCTCCTCTGTGCCAGGAGGATGACA < 41bp 1 0.306176295498265 1 0.739647150039673 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562204 chr17:48562205 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_36392 0 0 0 0 0 Ribosome 1 0.500231643934785 0.520705699920654 0.999536712130429 hm5C_site_36025 DeepMRMD:0.520705699920654;iRNA_m5C:0.999536712130429 36026 chr1 43893239 43893239 1 + C T SKCM 43893251 + 43893231 43893271 41 CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGCGTCAG CACCATTCTGTCGAGACTTACAGGCTTACGCTGGGCGTCAG < 41bp 1 0.302624320839265 1 0.898326456546783 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43893251 chr1:43893239 nonsynonymous SNV 0.932 0 9 hm5C_associated_SNPs_36393 0 0 1 0 1 Cytosol 1 0.500231643921094 0.203347086906434 0.999536712157813 hm5C_site_36026 DeepMRMD:0.203347086906434;iRNA_m5C:0.999536712157813 36027 chr13 111111224 111111224 1 + G A SKCM 111111217 + 111111197 111111237 41 CGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAG CGCAGGCATCAACGGGGAGCCGGGGAGAAAAGGGGACAGAG < 41bp 1 0.688838454124147 1 0.845823526382446 experiment 0.622323091751705 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111217 chr13:111111224 synonymous SNV . 0 28 hm5C_associated_SNPs_36394 0 0 0 0 1 Cytosol 1 0.50023164392109 0.308352947235108 0.99953671215782 hm5C_site_36027 DeepMRMD:0.308352947235108;iRNA_m5C:0.99953671215782 36028 chr11 93912978 93912978 1 + C T SKCM 93912995 + 93912975 93913015 41 GATCCTGAGAAACGACAGCACCGTGCCCGATCAGTTTCAGT GATTCTGAGAAACGACAGCACCGTGCCCGATCAGTTTCAGT < 41bp 1 0.158500193223354 1 0.119324177503586 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PANX1 ENSG00000110218 CDS Human protein_coding chr11:93912995 chr11:93912978 synonymous SNV . 0 4 hm5C_associated_SNPs_36395 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643922414 1 0.999536712155173 hm5C_site_36028 DeepMRMD:1;iRNA_m5C:0.999536712155173 36029 chr15 41229658 41229658 1 + G A SKCM 41229671 + 41229651 41229691 41 CCCCCAGGGACTCCATGTACCAGTCTGTGTGTTTGATATCA CCCCCAGAGACTCCATGTACCAGTCTGTGTGTTTGATATCA < 41bp 1 0.129934587660837 1 0.231269687414169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DLL4 ENSG00000128917 CDS Human protein_coding chr15:41229671 chr15:41229658 synonymous SNV . 0 8 hm5C_associated_SNPs_36396 0 0 0 0 2 Endoplasmic reticulum 1 0.500231657398774 1 0.999536685202452 hm5C_site_36029 DeepMRMD:1;iRNA_m5C:0.999536685202452 36030 chr5 156816240 156816240 1 + G C SKCM 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CCGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC < 41bp 1 0.319691683372262 1 0.620044350624084 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816240 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_36397 0 0 0 0 1 Cytosol 1 0.500231755238133 0.759911298751832 0.999536489523735 hm5C_site_36030 DeepMRMD:0.759911298751832;iRNA_m5C:0.999536489523735 36031 chr16 2225900 2225900 1 + C T SKCM 2225897 + 2225877 2225917 41 ACGTCTGGTGGCAGCGTCTACTCCATTGCTGTGACAAATCA ACGTCTGGTGGCAGCGTCTACTCTATTGCTGTGACAAATCA < 41bp 1 0.584756949336774 1 0.650840580463409 experiment 0.830486101326452 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TRAF7 ENSG00000131653 CDS Human protein_coding chr16:2225897 chr16:2225900 synonymous SNV . 0 24 hm5C_associated_SNPs_36398 0 0 1 0 2 Cytosol 1 0.500231893928464 0.698318839073182 0.999536212143071 hm5C_site_36031 DeepMRMD:0.698318839073182;iRNA_m5C:0.999536212143071 36032 chr5 176084625 176084625 1 + C T SKCM 176084617 + 176084597 176084637 41 GCAGAACTCTCTGACTGGGGCCCCTGGCCCGGCCCCACCCA GCAGAACTCTCTGACTGGGGCCCCTGGCTCGGCCCCACCCA < 41bp 1 0.396786819980235 1 0.0614467263221741 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176084617 chr5:176084625 nonsynonymous SNV 0.003 0 29 hm5C_associated_SNPs_36400 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36032 DeepMRMD:1;iRNA_m5C:0.999536712157815 36033 chr5 176084625 176084625 1 + C T SKCM 176084618 + 176084598 176084638 41 CAGAACTCTCTGACTGGGGCCCCTGGCCCGGCCCCACCCAG CAGAACTCTCTGACTGGGGCCCCTGGCTCGGCCCCACCCAG < 41bp 1 0.197832991499931 1 0.257014036178589 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176084618 chr5:176084625 nonsynonymous SNV 0.003 0 28 hm5C_associated_SNPs_36401 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643919436 1 0.999536712161128 hm5C_site_36033 DeepMRMD:1;iRNA_m5C:0.999536712161128 36034 chrX 205506 205506 1 + C T SKCM 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCACGCGTCCTGTCGTGCTGAA < 41bp 1 0.555457617354387 1 0.278589457273483 experiment 0.889084765291226 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205506 synonymous SNV . 0 27 hm5C_associated_SNPs_36402 0 0 1 0 1 Cytosol 1 0.500231642616299 1 0.999536714767403 hm5C_site_36034 DeepMRMD:1;iRNA_m5C:0.999536714767403 36035 chr5 176084626 176084626 1 + C T SKCM 176084617 + 176084597 176084637 41 GCAGAACTCTCTGACTGGGGCCCCTGGCCCGGCCCCACCCA GCAGAACTCTCTGACTGGGGCCCCTGGCCTGGCCCCACCCA < 41bp 1 0.354429238787547 1 0.0974036455154419 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176084617 chr5:176084626 nonsynonymous SNV 0.001 0 30 hm5C_associated_SNPs_36403 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_36035 DeepMRMD:1;iRNA_m5C:0.999536712157815 36036 chr5 176084626 176084626 1 + C T SKCM 176084618 + 176084598 176084638 41 CAGAACTCTCTGACTGGGGCCCCTGGCCCGGCCCCACCCAG CAGAACTCTCTGACTGGGGCCCCTGGCCTGGCCCCACCCAG < 41bp 1 0.205231647406448 1 0.192881017923355 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176084618 chr5:176084626 nonsynonymous SNV 0.001 0 29 hm5C_associated_SNPs_36404 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921257 1 0.999536712157485 hm5C_site_36036 DeepMRMD:1;iRNA_m5C:0.999536712157485 36037 chr11 61507965 61507965 1 + T C SKCM 61507955 + 61507935 61507975 41 CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGGG CTGCTGTGAGCAGGAGGAGCCCACATACTTCGCCATCTGGG < 41bp 1 0.131194877937026 1 0.235472828149796 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507955 chr11:61507965 synonymous SNV . 0 31 hm5C_associated_SNPs_36405 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644565053 1 0.999536710869894 hm5C_site_36037 DeepMRMD:1;iRNA_m5C:0.999536710869894 36038 chr11 61507965 61507965 1 + T C SKCM 61507980 + 61507960 61508000 41 TACTTTGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT TACTTCGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT < 41bp 1 0.169997222827344 1 0.34584105014801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507980 chr11:61507965 synonymous SNV . 0 6 hm5C_associated_SNPs_36406 0 0 1 0 2 Endoplasmic reticulum 1 0.500240378842545 1 0.999519242314911 hm5C_site_36038 DeepMRMD:1;iRNA_m5C:0.999519242314911 36039 chr15 91358362 91358362 1 + C T SKCM 91358367 + 91358347 91358387 41 TAGAAAGATATCTTCCAAAACGAAATCCTCCAGCATCATTG TAGAAAGATATCTTCTAAAACGAAATCCTCCAGCATCATTG < 41bp 1 0.67407181812671 1 0.0647605359554291 experiment 0.65185636374658 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91358367 chr15:91358362 synonymous SNV . 0 16 hm5C_associated_SNPs_36407 0 0 1 0 1 Ribosome 1 0.500231643921083 1 0.999536712157834 hm5C_site_36039 DeepMRMD:1;iRNA_m5C:0.999536712157834 36040 chr14 102805195 102805195 1 + G A SKCM 102805183 + 102805163 102805203 41 CATTAGGAATCACAGAATTCCTACGGAAGAAAGAAATACAC CATTAGGAATCACAGAATTCCTACGGAAGAAAAAAATACAC < 41bp 1 0.465941077865751 1 0.650456547737122 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805183 chr14:102805195 nonsynonymous SNV 0.001 0 33 hm5C_associated_SNPs_36408 0 0 1 0 2 chromatin 1 0.500231642866386 0.699086904525756 0.999536714267227 hm5C_site_36040 DeepMRMD:0.699086904525756;iRNA_m5C:0.999536714267227 36041 chr7 5338914 5338914 1 + C T SKCM 5338900 + 5338880 5338920 41 TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCCGACATG TGCACCGCTACGTGGTGGCGCGGGTGATCTGGGCTGACATG < 41bp 1 0.558626695778378 1 0.429721772670746 experiment 0.882746608443243 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338900 chr7:5338914 synonymous SNV . 0 35 hm5C_associated_SNPs_36409 0 0 0 0 1 Endoplasmic reticulum 1 0.500231668029851 1 0.999536663940298 hm5C_site_36041 DeepMRMD:1;iRNA_m5C:0.999536663940298 36042 chr22 26422836 26422836 1 + G A SKCM 26422843 + 26422823 26422863 41 GGCAGTGACGAGGGAAACCTCTCGCTGAGGGTTGGGGCAAA GGCAGTGACGAGGAAAACCTCTCGCTGAGGGTTGGGGCAAA < 41bp 1 0.447593739152745 1 0.757881283760071 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26422843 chr22:26422836 nonsynonymous SNV 0.578 2 14 hm5C_associated_SNPs_36410 0 0 0 0 0 chromatin 1 0.500231643921092 0.484237432479858 0.999536712157815 hm5C_site_36042 DeepMRMD:0.484237432479858;iRNA_m5C:0.999536712157815 36043 chr20 61292522 61292522 1 + G T SKCM 61292526 + 61292506 61292546 41 AAACCATCAGAGACCTGCCTCTGTAAGGACCGGAGTCGGGA AAACCATCAGAGACCTTCCTCTGTAAGGACCGGAGTCGGGA < 41bp 1 0.432289590787765 1 0.284180849790573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61292526 chr20:61292522 synonymous SNV . 0 17 hm5C_associated_SNPs_36411 0 0 1 1 1 Endoplasmic reticulum 1 0.500231643923121 1 0.999536712153758 hm5C_site_36043 DeepMRMD:1;iRNA_m5C:0.999536712153758 36044 chr1 44134853 44134853 1 + C T SKCM 44134847 + 44134827 44134867 41 AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCTG AGGAGGTGAGTCAGAGTGAGCTCTTCTCCAAGGAGGATCTG < 41bp 1 0.315734456280441 1 0.0305983126163483 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134847 chr1:44134853 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_36412 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_36044 DeepMRMD:1;iRNA_m5C:0.999536712157815 36045 chr1 156105739 156105739 1 + C T SKCM 156105721 + 156105701 156105741 41 AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCCG AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCTCG < 41bp 1 0.345599582593483 1 0.384909749031067 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105721 chr1:156105739 synonymous SNV . 0 39 hm5C_associated_SNPs_36413 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_36045 DeepMRMD:1;iRNA_m5C:0.999536712157812 36046 chr1 156105739 156105739 1 + C T SKCM 156105730 + 156105710 156105750 41 AAGCTTCGAGACCTGGAGGACTCACTGGCCCGTGAGCGGGA AAGCTTCGAGACCTGGAGGACTCACTGGCTCGTGAGCGGGA < 41bp 1 0.251383066043646 1 0.182772874832153 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105730 chr1:156105739 synonymous SNV . 0 30 hm5C_associated_SNPs_36414 0 0 1 0 1 Cytosol 1 0.500231639804451 1 0.999536720391098 hm5C_site_36046 DeepMRMD:1;iRNA_m5C:0.999536720391098 36047 chr19 50912809 50912809 1 + C T SKCM 50912807 + 50912787 50912827 41 AGCTGGCCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTG AGCTGGCCAAGGAGACAGACCCTCTCCGGCGCCAGGTCCTG < 41bp 1 0.0670407826903939 1 0.0188964009284973 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912807 chr19:50912809 synonymous SNV . 0 23 hm5C_associated_SNPs_36415 0 0 1 0 1 Nucleus 1 0.500231643924932 1 0.999536712150136 hm5C_site_36047 DeepMRMD:1;iRNA_m5C:0.999536712150136 36048 chr19 50912809 50912809 1 + C T SKCM 50912813 + 50912793 50912833 41 CCAAGGAGACAGACCCCCTCCGGCGCCAGGTCCTGGATGGA CCAAGGAGACAGACCCTCTCCGGCGCCAGGTCCTGGATGGA < 41bp 1 0.536885569047588 1 0.774699687957764 experiment 0.926228861904824 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912813 chr19:50912809 synonymous SNV . 0 17 hm5C_associated_SNPs_36416 0 0 1 0 1 Nucleus 1 0.500231643921092 0.450600624084472 0.999536712157815 hm5C_site_36048 DeepMRMD:0.450600624084472;iRNA_m5C:0.999536712157815 36049 chrX 151869816 151869816 1 + T G SKCM 151869802 + 151869782 151869822 41 TTGCAGCTGGTCTTTGGCATCGAGCTGATGGAAGTGGACCC TTGCAGCTGGTCTTTGGCATCGAGCTGATGGAAGGGGACCC < 41bp 1 0.623963851628828 1 0.740501821041107 experiment 0.752072296742343 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAGEA6 ENSG00000197172 CDS Human protein_coding chrX:151869802 chrX:151869816 nonsynonymous SNV 0.046 1 35 hm5C_associated_SNPs_36417 0 0 1 0 0 Ribosome 1 0.500231643262162 0.518996357917786 0.999536713475677 hm5C_site_36049 DeepMRMD:0.518996357917786;iRNA_m5C:0.999536713475677 36050 chr2 99156090 99156090 1 + A T SKCM 99156084 + 99156064 99156104 41 GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGCAGT GATGGCAGAGAGCGTGCTCTCCCTGCTCGTGCCCCGGCAGT < 41bp 1 0.398479496533737 1 0.229125767946243 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99156084 chr2:99156090 nonsynonymous SNV 0.996 1 27 hm5C_associated_SNPs_36418 0 0 1 0 1 Ribosome 1 0.50023207986522 1 0.999535840269559 hm5C_site_36050 DeepMRMD:1;iRNA_m5C:0.999535840269559 36051 chr7 94917897 94917897 1 + C T SKCM 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA TCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA < 41bp 1 0.583884520839123 1 0.16942498087883 experiment 0.832230958321755 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917897 nonsynonymous SNV 0.217 4 1 hm5C_associated_SNPs_36419 0 0 0 0 1 Nucleus 1 0.500231643921202 1 0.999536712157596 hm5C_site_36051 DeepMRMD:1;iRNA_m5C:0.999536712157596 36052 chr2 99156091 99156091 1 + C T SKCM 99156084 + 99156064 99156104 41 GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGCAGT GATGGCAGAGAGCGTGCTCTCCCTGCATGTGCCCCGGCAGT < 41bp 1 0.336816737217637 1 0.75275182723999 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99156084 chr2:99156091 synonymous SNV . 0 28 hm5C_associated_SNPs_36420 0 0 1 0 1 Ribosome 1 0.500231736158058 0.49449634552002 0.999536527683884 hm5C_site_36052 DeepMRMD:0.49449634552002;iRNA_m5C:0.999536527683884 36053 chr5 75970327 75970327 1 + G C SKCM 75970317 + 75970297 75970337 41 TCCAGATTGTTGGAAACCTCCTGTACTATCGGTACATGAAT TCCAGATTGTTGGAAACCTCCTGTACTATCCGTACATGAAT < 41bp 1 0.373447593354976 1 0.112801611423492 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75970317 chr5:75970327 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_36421 0 0 0 0 0 Cytosol 1 0.500231561153725 1 0.999536877692551 hm5C_site_36053 DeepMRMD:1;iRNA_m5C:0.999536877692551 36054 chr1 43917105 43917105 1 + C A SKCM 43917100 - 43917080 43917120 41 GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCGAGG GGCTACAAAGGCTTCTTGGGCTGTGAGTATCAGCCTCGAGG < 41bp 1 0.273827045655509 1 0.0380374491214752 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HYI ENSG00000178922 CDS Human protein_coding chr1:43917100 chr1:43917105 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_36422 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36054 DeepMRMD:1;iRNA_m5C:0.999536712157815 36055 chr3 47882497 47882497 1 + G A SKCM 47882499 + 47882479 47882519 41 TGCCCCCTACTTCCTGGCGGCAGCTGAATCCAGAGAGTATT TGCCCCCTACTTCCTGGCAGCAGCTGAATCCAGAGAGTATT < 41bp 1 0.32054507379198 1 0.0912767648696899 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47882499 chr3:47882497 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_36423 0 0 1 0 0 Cytosol 1 0.500231643921037 1 0.999536712157925 hm5C_site_36055 DeepMRMD:1;iRNA_m5C:0.999536712157925 36056 chr19 16339733 16339733 1 + C T SKCM 16339738 + 16339718 16339758 41 GTGGTCCATCAAGTCCTTCCCGGTGAGCACTCTGTCCAGAC GTGGTCCATCAAGTCTTTCCCGGTGAGCACTCTGTCCAGAC < 41bp 1 0.583987611506527 1 0.464800357818604 experiment 0.832024776986945 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16339738 chr19:16339733 synonymous SNV . 0 16 hm5C_associated_SNPs_36425 0 0 1 0 1 Ribosome 1 0.500231643921101 1 0.999536712157798 hm5C_site_36056 DeepMRMD:1;iRNA_m5C:0.999536712157798 36057 chr5 112868665 112868665 1 + T G SKCM 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCGGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.545192790611264 1 0.111478805541992 experiment 0.909614418777472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868665 synonymous SNV . 0 4 hm5C_associated_SNPs_36427 0 0 1 0 2 Cytosol 1 0.500238160562734 1 0.999523678874531 hm5C_site_36057 DeepMRMD:1;iRNA_m5C:0.999523678874531 36058 chr5 112868665 112868665 1 + T G SKCM 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCGGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.582540175118331 1 0.744464099407196 experiment 0.834919649763338 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868665 synonymous SNV . 0 3 hm5C_associated_SNPs_36428 0 0 1 0 2 Cytosol 1 0.500231643924479 0.511071801185608 0.999536712151041 hm5C_site_36058 DeepMRMD:0.511071801185608;iRNA_m5C:0.999536712151041 36059 chr17 65905795 65905795 1 + T G SKCM 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG AATAAAAATAGAGCCTGATTCTGAAAAAGAGGAGGTAAAAG < 41bp 1 0.46827683531106 1 0.664343357086182 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905795 nonsynonymous SNV 0.954 0 31 hm5C_associated_SNPs_36429 0 0 1 0 2 Cytosol 1 0.500231644207174 0.671313285827636 0.999536711585651 hm5C_site_36059 DeepMRMD:0.671313285827636;iRNA_m5C:0.999536711585651 36060 chr21 44324166 44324166 1 + C T SKCM 44324165 + 44324145 44324185 41 CCAGCGCAAGGCGGCCCCTCCCCTGCCCAGAAAGGAAACCT CCAGCGCAAGGCGGCCCCTCCTCTGCCCAGAAAGGAAACCT < 41bp 1 0.264695725158969 1 0.635618090629578 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFV3 ENSG00000160194 CDS Human protein_coding chr21:44324165 chr21:44324166 synonymous SNV . 0 22 hm5C_associated_SNPs_36430 0 0 0 0 0 Nucleus 1 0.500231643921092 0.728763818740844 0.999536712157815 hm5C_site_36060 DeepMRMD:0.728763818740844;iRNA_m5C:0.999536712157815 36061 chr12 131488809 131488809 1 + T C SKCM 131488791 + 131488771 131488811 41 CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCC CTCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCACCC < 41bp 1 0.0550711872835611 1 0.0649777948856354 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488791 chr12:131488809 nonsynonymous SNV 0.050 3 39 hm5C_associated_SNPs_36431 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36061 DeepMRMD:1;iRNA_m5C:0.999536712157815 36062 chr12 131488809 131488809 1 + T C SKCM 131488792 + 131488772 131488812 41 TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCA TCCCATTACCGCTTCCCGGCCCACGGGCAGAGCTTCACCCA < 41bp 1 0.246506357161357 1 0.334141671657562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488792 chr12:131488809 nonsynonymous SNV 0.050 3 38 hm5C_associated_SNPs_36432 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36062 DeepMRMD:1;iRNA_m5C:0.999536712157815 36063 chr12 131488809 131488809 1 + T C SKCM 131488795 + 131488775 131488815 41 CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGAT CATTACCGCTTCCCGGCCCACGGGCAGAGCTTCACCCAGAT < 41bp 1 0.53721476250978 1 0.919541358947754 experiment 0.925570474980439 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488795 chr12:131488809 nonsynonymous SNV 0.050 3 35 hm5C_associated_SNPs_36434 0 0 1 0 1 chromatin 1 0.500231643921092 0.160917282104492 0.999536712157815 hm5C_site_36063 DeepMRMD:0.160917282104492;iRNA_m5C:0.999536712157815 36064 chr12 131488809 131488809 1 + T C SKCM 131488799 + 131488779 131488819 41 ACCGCTTCCCGGCCCACGGGCAGAGCTTCATCCAGATCCCC ACCGCTTCCCGGCCCACGGGCAGAGCTTCACCCAGATCCCC < 41bp 1 0.388536638148528 1 0.795200526714325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131488799 chr12:131488809 nonsynonymous SNV 0.050 3 31 hm5C_associated_SNPs_36435 0 0 1 0 1 chromatin 1 0.500231643921092 0.40959894657135 0.999536712157816 hm5C_site_36064 DeepMRMD:0.40959894657135;iRNA_m5C:0.999536712157816 36065 chr19 14024281 14024281 1 + C T SKCM 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCCGCTGCCAGTGGCCATAGGAAAAGGCCCGGCGT < 41bp 1 0.225005998851308 1 0.235393166542053 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024281 nonsynonymous SNV 0.007 5 12 hm5C_associated_SNPs_36436 0 0 0 0 1 chromatin 1 0.500231643921077 1 0.999536712157847 hm5C_site_36065 DeepMRMD:1;iRNA_m5C:0.999536712157847 36066 chr10 70968472 70968472 1 + A G SKCM 70968483 + 70968463 70968503 41 AAATGTCTGAGACGCATAAGCTGTTGAATTTGGAGGGCTTT AAATGTCTGGGACGCATAAGCTGTTGAATTTGGAGGGCTTT < 41bp 1 0.426784264708485 1 0.201606124639511 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70968483 chr10:70968472 nonsynonymous SNV 0.980 2 10 hm5C_associated_SNPs_36437 0 0 1 0 0 Cytosol 1 0.500231643921095 1 0.999536712157811 hm5C_site_36066 DeepMRMD:1;iRNA_m5C:0.999536712157811 36067 chr5 179025792 179025792 1 + G A SKCM 179025776 + 179025756 179025796 41 ACAGCACGAGAAAGACACTTCCTCTCTACTCAGGATGGAGC ACAGCACGAGAAAGACACTTCCTCTCTACTCAGGATAGAGC < 41bp 1 0.039709915064277 1 0.0746619999408722 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179025776 chr5:179025792 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_36438 0 0 1 0 2 Ribosome 1 0.500231648000673 1 0.999536703998655 hm5C_site_36067 DeepMRMD:1;iRNA_m5C:0.999536703998655 36068 chr17 7417414 7417414 1 + C T SKCM 7417430 + 7417410 7417450 41 ACTTCCCCTGGTTACTCGCCCACCAGCCCCACCTACAGTCT ACTTTCCCTGGTTACTCGCCCACCAGCCCCACCTACAGTCT < 41bp 1 0.570233457098079 1 0.317122578620911 experiment 0.859533085803841 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7417430 chr17:7417414 nonsynonymous SNV 0.998 0 5 hm5C_associated_SNPs_36440 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36068 DeepMRMD:1;iRNA_m5C:0.999536712157815 36069 chr17 7417412 7417412 1 + T C SKCM 7417430 + 7417410 7417450 41 ACTTCCCCTGGTTACTCGCCCACCAGCCCCACCTACAGTCT ACCTCCCCTGGTTACTCGCCCACCAGCCCCACCTACAGTCT < 41bp 1 0.54508801249245 1 0.275755852460861 experiment 0.9098239750151 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7417430 chr17:7417412 synonymous SNV 0.995 0 3 hm5C_associated_SNPs_36441 0 0 1 0 0 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_36069 DeepMRMD:1;iRNA_m5C:0.999536712157812 36070 chr15 40708539 40708539 1 + C A SKCM 40708548 + 40708528 40708568 41 ACACAGGTAGCCCTGGACGGCATTCAGTGTTTTGGTGAGTG ACACAGGTAGCACTGGACGGCATTCAGTGTTTTGGTGAGTG < 41bp 1 0.0388870315828398 1 0.030078649520874 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IVD ENSG00000128928 CDS Human protein_coding chr15:40708548 chr15:40708539 synonymous SNV . 0 12 hm5C_associated_SNPs_36442 0 0 1 0 2 Cytosol 1 0.500231658229333 1 0.999536683541333 hm5C_site_36070 DeepMRMD:1;iRNA_m5C:0.999536683541333 36071 chr10 17271935 17271935 1 + G A SKCM 17271952 + 17271932 17271972 41 GTCGAGGTGGAGCGCGACAACCTGGCCGAGGACATCATGCG GTCAAGGTGGAGCGCGACAACCTGGCCGAGGACATCATGCG < 41bp 1 0.418218691791774 1 0.27867004275322 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271952 chr10:17271935 nonsynonymous SNV 0.997 5 4 hm5C_associated_SNPs_36443 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_36071 DeepMRMD:1;iRNA_m5C:0.999536712157811 36072 chr17 78321333 78321333 1 + G A SKCM 78321325 + 78321305 78321345 41 AGACATTCTTCGAGGGGGACCAGCAGCCGGAGATTATTTTT AGACATTCTTCGAGGGGGACCAGCAGCCAGAGATTATTTTT < 41bp 1 0.163210544342117 1 0.638591766357422 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78321325 chr17:78321333 synonymous SNV . 0 29 hm5C_associated_SNPs_36444 0 0 1 0 0 Nucleus 1 0.50023164382966 0.722816467285156 0.99953671234068 hm5C_site_36072 DeepMRMD:0.722816467285156;iRNA_m5C:0.99953671234068 36073 chr17 78321333 78321333 1 + G A SKCM 78321328 + 78321308 78321348 41 CATTCTTCGAGGGGGACCAGCAGCCGGAGATTATTTTTGGT CATTCTTCGAGGGGGACCAGCAGCCAGAGATTATTTTTGGT < 41bp 1 0.0693302595304327 1 0.441235840320587 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78321328 chr17:78321333 synonymous SNV . 0 26 hm5C_associated_SNPs_36445 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36073 DeepMRMD:1;iRNA_m5C:0.999536712157815 36074 chr20 2846048 2846048 1 + C T SKCM 2846046 + 2846026 2846066 41 AAGCCCAGCTTTCCTGCAGGCTCTGGTGGCTGAAGCTGACT AAGCCCAGCTTTCCTGCAGGCTTTGGTGGCTGAAGCTGACT < 41bp 1 0.0853939894293214 1 0.0346158146858215 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846046 chr20:2846048 synonymous SNV . 0 23 hm5C_associated_SNPs_36446 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_36074 DeepMRMD:1;iRNA_m5C:0.999536712157816 36075 chr10 72324221 72324221 1 + C T SKCM 72324236 + 72324216 72324256 41 TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT TACCTTCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT < 41bp 1 0.191579699927972 1 0.440056324005127 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72324236 chr10:72324221 synonymous SNV . 0 6 hm5C_associated_SNPs_36447 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36075 DeepMRMD:1;iRNA_m5C:0.999536712157815 36076 chr17 78201712 78201712 1 + C T SKCM 78201694 + 78201674 78201714 41 GATGCGGGACCACGTGCCTCCCGTCCACCCCGAGATGCCCC GATGCGGGACCACGTGCCTCCCGTCCACCCCGAGATGCTCC < 41bp 1 0.0904639342070273 1 0.62809419631958 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78201694 chr17:78201712 nonsynonymous SNV 0.657 2 39 hm5C_associated_SNPs_36449 0 0 1 0 1 chromatin 1 0.500231643918024 0.74381160736084 0.999536712163952 hm5C_site_36076 DeepMRMD:0.74381160736084;iRNA_m5C:0.999536712163952 36077 chr19 7911465 7911465 1 + C T SKCM 7911474 + 7911454 7911494 41 ACTCCTCATCCCAGGAGGCCCTGTCGGCCCCCACCTGCTCC ACTCCTCATCCTAGGAGGCCCTGTCGGCCCCCACCTGCTCC < 41bp 1 0.186643246598851 1 0.049110472202301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EVI5L ENSG00000142459 CDS Human protein_coding chr19:7911474 chr19:7911465 stopgain 0.998 1 12 hm5C_associated_SNPs_36450 0 0 0 0 0 Ribosome 1 0.50023164392109 1 0.999536712157819 hm5C_site_36077 DeepMRMD:1;iRNA_m5C:0.999536712157819 36078 chr4 8294051 8294051 1 + G A SKCM 8294067 + 8294047 8294087 41 GTACGGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG GTACAGGAACTCCGGGGGACCACTGGTGAACCTGGTAAGTG < 41bp 1 0.375222014385137 1 0.355164080858231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8294067 chr4:8294051 nonsynonymous SNV 0.988 5 5 hm5C_associated_SNPs_36451 0 0 0 0 2 exosome 1 0.500232824533334 1 0.999534350933331 hm5C_site_36078 DeepMRMD:1;iRNA_m5C:0.999534350933331 36079 chr14 50789412 50789412 1 + C T SKCM 50789396 + 50789376 50789416 41 CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATCATGA CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATTATGA < 41bp 1 0.0746817983433549 1 0.117917776107788 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789396 chr14:50789412 synonymous SNV . 0 37 hm5C_associated_SNPs_36452 0 0 1 0 1 Cytosol 1 0.50023164226944 1 0.999536715461121 hm5C_site_36079 DeepMRMD:1;iRNA_m5C:0.999536715461121 36080 chr20 47859199 47859199 1 + C T SKCM 47859198 + 47859178 47859218 41 ACCAACACAAGCAAGAAGGCCCTGAAACAGTATCGAGCTGG ACCAACACAAGCAAGAAGGCCTTGAAACAGTATCGAGCTGG < 41bp 1 0.428224186872008 1 0.250437259674072 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX27 ENSG00000124228 CDS Human protein_coding chr20:47859198 chr20:47859199 synonymous SNV . 0 22 hm5C_associated_SNPs_36454 0 0 1 0 2 chromatin 1 0.500231643912983 1 0.999536712174034 hm5C_site_36080 DeepMRMD:1;iRNA_m5C:0.999536712174034 36081 chr3 183435492 183435492 1 + C T SKCM 183435490 + 183435470 183435510 41 TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG TATTATCAAAGAACAGTTTGCTTTTGAAATGAAGAATAAGG < 41bp 1 0.0179079673728852 1 0.0352792739868164 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435490 chr3:183435492 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_36456 0 0 1 0 2 Nucleus 1 0.500231643916857 1 0.999536712166286 hm5C_site_36081 DeepMRMD:1;iRNA_m5C:0.999536712166286 36082 chr11 308250 308250 1 + G A SKCM 308239 + 308219 308259 41 TCCTGTCAACAGCGGCCAGCCTCCCAACTACGAGATGCTCA TCCTGTCAACAGCGGCCAGCCTCCCAACTACAAGATGCTCA < 41bp 1 0.35077904252841 1 0.326428979635239 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IFITM2 ENSG00000185201 CDS Human protein_coding chr11:308239 chr11:308250 nonsynonymous SNV 0.002 1 32 hm5C_associated_SNPs_36457 0 0 1 0 0 Endoplasmic reticulum 1 0.500224906937084 1 0.999550186125832 hm5C_site_36082 DeepMRMD:1;iRNA_m5C:0.999550186125832 36083 chr19 11472104 11472104 1 + G A SKCM 11472113 + 11472093 11472133 41 GTGGCCGCCGCGCGCCGCGCCTTCCCCTGCAAGGATGCGGC GTGGCCGCCGCACGCCGCGCCTTCCCCTGCAAGGATGCGGC < 41bp 1 0.107713783318339 1 0.400506019592285 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11472113 chr19:11472104 synonymous SNV . 0 12 hm5C_associated_SNPs_36458 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36083 DeepMRMD:1;iRNA_m5C:0.999536712157815 36084 chr16 70162997 70162997 1 + T A SKCM 70163015 + 70162995 70163035 41 CTTGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT CTAGCCCTGGCAAGTGCTGCCTCCCAAAATGGTGAGCAGGT < 41bp 1 0.155241243306196 1 0.187673300504684 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70163015 chr16:70162997 synonymous SNV . 0 3 hm5C_associated_SNPs_36459 0 0 1 0 1 Nucleus 1 0.50023164502529 1 0.99953670994942 hm5C_site_36084 DeepMRMD:1;iRNA_m5C:0.99953670994942 36085 chr11 73941314 73941314 1 + C T SKCM 73941327 + 73941307 73941347 41 TTGAAGCCATGTATGGGGACCTTCCTCCTCCAATTATGCTG TTGAAGCTATGTATGGGGACCTTCCTCCTCCAATTATGCTG < 41bp 1 0.0782922389896137 1 0.0289098918437958 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PPME1 ENSG00000214517 CDS Human protein_coding chr11:73941327 chr11:73941314 synonymous SNV . 0 8 hm5C_associated_SNPs_36460 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36085 DeepMRMD:1;iRNA_m5C:0.999536712157815 36086 chr15 52356226 52356226 1 + C T SKCM 52356223 + 52356203 52356243 41 AAGAAGAAGTACAAGTTGATCCCCGAAAATATTTGGATGGA AAGAAGAAGTACAAGTTGATCCCTGAAAATATTTGGATGGA < 41bp 1 0.286946013943279 1 0.256541728973389 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356223 chr15:52356226 stopgain 1.000 1 24 hm5C_associated_SNPs_36461 0 0 1 0 0 Ribosome 1 0.500231643966945 1 0.999536712066109 hm5C_site_36086 DeepMRMD:1;iRNA_m5C:0.999536712066109 36087 chr11 130013326 130013326 1 + G A SKCM 130013308 + 130013288 130013328 41 AGAACCATGGCTATGAGAACCCCACCTACAAATACCTGGAG AGAACCATGGCTATGAGAACCCCACCTACAAATACCTGAAG < 41bp 1 0.127162578656961 1 0.3646599650383 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130013308 chr11:130013326 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_36463 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164403814 1 0.999536711923719 hm5C_site_36087 DeepMRMD:1;iRNA_m5C:0.999536711923719 36088 chr12 82796832 82796832 1 + A G SKCM 82796830 + 82796810 82796850 41 ACTTTGCGAATATTTACCTCCAACTCTGAAATCAAGGGAGT ACTTTGCGAATATTTACCTCCAGCTCTGAAATCAAGGGAGT < 41bp 1 0.354487933520615 1 0.274502158164978 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL25 ENSG00000127720 CDS Human protein_coding chr12:82796830 chr12:82796832 nonsynonymous SNV 0.806 0 23 hm5C_associated_SNPs_36465 0 0 0 0 2 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_36088 DeepMRMD:1;iRNA_m5C:0.999536712157815 36089 chr7 44685012 44685012 1 + C T SKCM 44685003 + 44684983 44685023 41 CAGAGTCCCCTTCCCCTGAGCCGAGGCTCCCTGGCTGCTGT CAGAGTCCCCTTCCCCTGAGCCGAGGCTCTCTGGCTGCTGT < 41bp 1 0.246578295851858 1 0.472901254892349 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44685003 chr7:44685012 synonymous SNV . 0 30 hm5C_associated_SNPs_36466 0 0 1 0 0 Nucleus 1 0.5002316410206 1 0.9995367179588 hm5C_site_36089 DeepMRMD:1;iRNA_m5C:0.9995367179588 36090 chr5 139889228 139889228 1 + C G SKCM 139889232 + 139889212 139889252 41 GTTTAAACAGACGGGTCTTACCCCCTTGATGGAAGCAGCTT GTTTAAACAGACGGGTGTTACCCCCTTGATGGAAGCAGCTT < 41bp 1 0.159230357018597 1 0.062961608171463 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139889232 chr5:139889228 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_36467 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_36090 DeepMRMD:1;iRNA_m5C:0.999536712157815 36091 chr5 139889228 139889228 1 + C G SKCM 139889233 + 139889213 139889253 41 TTTAAACAGACGGGTCTTACCCCCTTGATGGAAGCAGCTTC TTTAAACAGACGGGTGTTACCCCCTTGATGGAAGCAGCTTC < 41bp 1 0.28489768280222 1 0.0457251369953156 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139889233 chr5:139889228 nonsynonymous SNV 0.998 4 16 hm5C_associated_SNPs_36468 0 0 1 0 0 unknown 1 0.50023164392106 1 0.99953671215788 hm5C_site_36091 DeepMRMD:1;iRNA_m5C:0.99953671215788 36092 chr5 139889228 139889228 1 + C G SKCM 139889234 + 139889214 139889254 41 TTAAACAGACGGGTCTTACCCCCTTGATGGAAGCAGCTTCT TTAAACAGACGGGTGTTACCCCCTTGATGGAAGCAGCTTCT < 41bp 1 0.100126976432147 1 0.107112437486649 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139889234 chr5:139889228 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_36469 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_36092 DeepMRMD:1;iRNA_m5C:0.999536712157815 36093 chr5 139889228 139889228 1 + C G SKCM 139889236 + 139889216 139889256 41 AAACAGACGGGTCTTACCCCCTTGATGGAAGCAGCTTCTGG AAACAGACGGGTGTTACCCCCTTGATGGAAGCAGCTTCTGG < 41bp 1 0.399991163557126 1 0.450942426919937 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139889236 chr5:139889228 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_36470 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_36093 DeepMRMD:1;iRNA_m5C:0.999536712157815 36094 chr16 30740292 30740292 1 + C T SKCM 30740289 + 30740269 30740309 41 TTTTTCTCTCACCCCCAGGACTCCCTGGAGGAAAAGCGGAA TTTTTCTCTCACCCCCAGGACTCTCTGGAGGAAAAGCGGAA < 41bp 1 0.0248280013904888 1 0.0773354470729828 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30740289 chr16:30740292 synonymous SNV . 0 24 hm5C_associated_SNPs_36471 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36094 DeepMRMD:1;iRNA_m5C:0.999536712157815 36095 chr15 52356225 52356225 1 + C T SKCM 52356223 + 52356203 52356243 41 AAGAAGAAGTACAAGTTGATCCCCGAAAATATTTGGATGGA AAGAAGAAGTACAAGTTGATCCTCGAAAATATTTGGATGGA < 41bp 1 0.237248279181434 1 0.421688616275787 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356223 chr15:52356225 synonymous SNV . 0 23 hm5C_associated_SNPs_36472 0 0 1 0 0 Ribosome 1 0.500231644557859 1 0.999536710884282 hm5C_site_36095 DeepMRMD:1;iRNA_m5C:0.999536710884282 36096 chr15 52356225 52356225 1 + C T SKCM 52356226 + 52356206 52356246 41 AAGAAGTACAAGTTGATCCCCGAAAATATTTGGATGGAGAT AAGAAGTACAAGTTGATCCTCGAAAATATTTGGATGGAGAT < 41bp 1 0.634780419649353 1 0.443077594041824 experiment 0.730439160701294 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356226 chr15:52356225 synonymous SNV . 0 20 hm5C_associated_SNPs_36473 0 0 1 0 0 Ribosome 1 0.500231644555158 1 0.999536710889683 hm5C_site_36096 DeepMRMD:1;iRNA_m5C:0.999536710889683 36097 chr16 30740291 30740291 1 + C T SKCM 30740289 + 30740269 30740309 41 TTTTTCTCTCACCCCCAGGACTCCCTGGAGGAAAAGCGGAA TTTTTCTCTCACCCCCAGGACTTCCTGGAGGAAAAGCGGAA < 41bp 1 0.0191562675017389 1 0.0670580863952637 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30740289 chr16:30740291 nonsynonymous SNV 0.956 2 23 hm5C_associated_SNPs_36474 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36097 DeepMRMD:1;iRNA_m5C:0.999536712157815 36098 chr7 66489949 66489949 1 + A G SKCM 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGCCTGAATTCCATT < 41bp 1 0.423521120328658 1 0.157021075487137 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489949 synonymous SNV . 0 32 hm5C_associated_SNPs_36475 0 0 0 0 2 Endoplasmic reticulum 1 0.500261373352744 1 0.999477253294511 hm5C_site_36098 DeepMRMD:1;iRNA_m5C:0.999477253294511 36099 chr7 99159542 99159542 1 + C T SKCM 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTCCTCAGGTGCCTGCTCTTCCTCGTGAGGGAAGCC < 41bp 1 0.189378775734255 1 0.0975724458694458 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159542 synonymous SNV . 0 28 hm5C_associated_SNPs_36476 0 0 1 0 2 Cytosol 1 0.500231643922096 1 0.999536712155807 hm5C_site_36099 DeepMRMD:1;iRNA_m5C:0.999536712155807 36100 chr22 41735146 41735146 1 + C T SKCM 41735129 + 41735109 41735149 41 AGGACCCTCCCCAGCACCGACAGCCTGGATGACTTCTCAGA AGGACCCTCCCCAGCACCGACAGCCTGGATGACTTCTTAGA < 41bp 1 0.207146828541122 1 0.220252305269241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735129 chr22:41735146 nonsynonymous SNV 0.987 0 38 hm5C_associated_SNPs_36478 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36100 DeepMRMD:1;iRNA_m5C:0.999536712157815 36101 chr1 233514947 233514947 1 + C T SKCM 233514944 + 233514924 233514964 41 TGGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG TGGGTGCACCGTCCTTCTGGCATTGGTGGCTCTGGGACTGG < 41bp 1 0.141936474335939 1 0.0372277796268463 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233514944 chr1:233514947 nonsynonymous SNV 0.018 4 24 hm5C_associated_SNPs_36479 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_36101 DeepMRMD:1;iRNA_m5C:0.999536712157814 36102 chr17 21731336 21731336 1 + C T SKCM 21731317 + 21731297 21731337 41 GCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGCGGTACTCTTTCTGACTACAACATTC < 41bp 1 0.153743570717173 1 0.114688277244568 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731317 chr17:21731336 nonsynonymous SNV 0.952 0 40 hm5C_associated_SNPs_36480 0 0 1 0 0 Ribosome 1 0.500230407329562 1 0.999539185340876 hm5C_site_36102 DeepMRMD:1;iRNA_m5C:0.999539185340876 36103 chr2 171822317 171822317 1 + T C SKCM 171822305 + 171822285 171822325 41 CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTCCATGCCT CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTCCCATGCCT < 41bp 1 0.12973163091262 1 0.0545580387115479 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171822305 chr2:171822317 nonsynonymous SNV 0.952 0 33 hm5C_associated_SNPs_36481 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_36103 DeepMRMD:1;iRNA_m5C:0.999536712157818 36104 chr2 171822316 171822316 1 + T C SKCM 171822305 + 171822285 171822325 41 CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTCCATGCCT CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCCTCCATGCCT < 41bp 1 0.118657389400599 1 0.0574448704719543 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171822305 chr2:171822316 synonymous SNV . 0 32 hm5C_associated_SNPs_36482 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36104 DeepMRMD:1;iRNA_m5C:0.999536712157815 36105 chr2 113243522 113243522 1 + G T SKCM 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTTAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG < 41bp 1 0.236716745935331 1 0.166582256555557 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243522 synonymous SNV . 0 4 hm5C_associated_SNPs_36483 0 0 1 0 2 Cytosol 1 0.500231644460214 1 0.999536711079572 hm5C_site_36105 DeepMRMD:1;iRNA_m5C:0.999536711079572 36106 chr6 31601235 31601235 1 + C T SKCM 31601218 + 31601198 31601238 41 CCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTGGACCAAG CCCACCTCCCAGCAGTTCTGCTGTCTTCCGCCTGGACTAAG < 41bp 1 0.295704661126136 1 0.13575553894043 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31601218 chr6:31601235 stopgain 1.000 0 38 hm5C_associated_SNPs_36484 0 0 1 0 1 Ribosome 1 0.500231627314677 1 0.999536745370647 hm5C_site_36106 DeepMRMD:1;iRNA_m5C:0.999536745370647 36107 chr3 155629027 155629027 1 + C T SKCM 155629040 + 155629020 155629060 41 AGCCAGTCTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA AGCCAGTTTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA < 41bp 1 0.135735319195187 1 0.0410372316837311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155629040 chr3:155629027 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_36485 0 0 1 0 1 Nucleus 1 0.500231643921057 1 0.999536712157886 hm5C_site_36107 DeepMRMD:1;iRNA_m5C:0.999536712157886 36108 chr7 142458471 142458471 1 + C T SKCM 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCTC < 41bp 1 0.434412298824804 1 0.368430912494659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458471 nonsynonymous SNV 0.908 4 40 hm5C_associated_SNPs_36486 0 0 0 0 2 Cytosol 1 0.500231682726661 1 0.999536634546679 hm5C_site_36108 DeepMRMD:1;iRNA_m5C:0.999536634546679 36109 chr7 142458471 142458471 1 + C T SKCM 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCC < 41bp 1 0.200416333094803 1 0.11750802397728 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458471 nonsynonymous SNV 0.908 4 26 hm5C_associated_SNPs_36487 0 0 0 0 2 Cytosol 1 0.500231643878352 1 0.999536712243297 hm5C_site_36109 DeepMRMD:1;iRNA_m5C:0.999536712243297 36110 chr7 142458471 142458471 1 + C T SKCM 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAA < 41bp 1 0.319507510694068 1 0.838317275047302 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458471 nonsynonymous SNV 0.908 4 22 hm5C_associated_SNPs_36488 0 0 0 0 2 Cytosol 1 0.50023164392109 0.323365449905396 0.99953671215782 hm5C_site_36110 DeepMRMD:0.323365449905396;iRNA_m5C:0.99953671215782 36111 chr7 142458471 142458471 1 + C T SKCM 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAATT < 41bp 1 0.020505882293127 1 0.245990037918091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458471 nonsynonymous SNV 0.908 4 20 hm5C_associated_SNPs_36489 0 0 0 0 2 Cytosol 1 0.500231643921045 1 0.999536712157909 hm5C_site_36111 DeepMRMD:1;iRNA_m5C:0.999536712157909 36112 chr7 142458471 142458471 1 + C T SKCM 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.147625327988905 1 0.0702512860298157 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458471 nonsynonymous SNV 0.908 4 19 hm5C_associated_SNPs_36490 0 0 0 0 2 Cytosol 1 0.500231642271743 1 0.999536715456514 hm5C_site_36112 DeepMRMD:1;iRNA_m5C:0.999536715456514 36113 chr7 142458471 142458471 1 + C T SKCM 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.22917564023444 1 0.466945767402649 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458471 nonsynonymous SNV 0.908 4 16 hm5C_associated_SNPs_36491 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36113 DeepMRMD:1;iRNA_m5C:0.999536712157815 36114 chr7 142458471 142458471 1 + C T SKCM 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAATTCTGTCTCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.614567581173859 1 0.860414266586304 experiment 0.770864837652282 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458471 nonsynonymous SNV 0.908 4 15 hm5C_associated_SNPs_36492 0 0 0 0 2 Cytosol 1 0.500231557202847 0.279171466827392 0.999536885594306 hm5C_site_36114 DeepMRMD:0.279171466827392;iRNA_m5C:0.999536885594306 36115 chr7 142458471 142458471 1 + C T SKCM 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT TTCTGTCTCCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.115430428604479 1 0.0681987702846527 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458471 nonsynonymous SNV 0.908 4 8 hm5C_associated_SNPs_36493 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36115 DeepMRMD:1;iRNA_m5C:0.999536712157815 36116 chr7 142458471 142458471 1 + C T SKCM 142458485 + 142458465 142458505 41 TCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT TCTGTCTCCTACCAGGTGTCCCTGAATTCTGGCTACCACTT < 41bp 1 0.286101994815652 1 0.101932346820831 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458485 chr7:142458471 nonsynonymous SNV 0.908 4 7 hm5C_associated_SNPs_36494 0 0 0 0 2 Cytosol 1 0.500231642776408 1 0.999536714447184 hm5C_site_36116 DeepMRMD:1;iRNA_m5C:0.999536714447184 36117 chr22 32445953 32445953 1 + G A SKCM 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGAACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT < 41bp 1 0.264597301395433 1 0.23611119389534 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445953 synonymous SNV . 0 3 hm5C_associated_SNPs_36496 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36117 DeepMRMD:1;iRNA_m5C:0.999536712157815 36118 chr17 4797353 4797353 1 + C T SKCM 4797354 + 4797334 4797374 41 GGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCA GGAGATCACCGGGACCCAGTCCCCATACGGGGGCGGCACCA < 41bp 1 0.590274826542014 1 0.847155570983887 experiment 0.819450346915971 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797354 chr17:4797353 nonsynonymous SNV 0.958 0 20 hm5C_associated_SNPs_36498 0 0 1 0 2 Ribosome 1 0.500231643921052 0.305688858032226 0.999536712157895 hm5C_site_36118 DeepMRMD:0.305688858032226;iRNA_m5C:0.999536712157895 36119 chr17 4797353 4797353 1 + C T SKCM 4797355 + 4797335 4797375 41 GAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCAT GAGATCACCGGGACCCAGTCCCCATACGGGGGCGGCACCAT < 41bp 1 0.0741695341049198 1 0.751321911811829 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797355 chr17:4797353 nonsynonymous SNV 0.958 0 19 hm5C_associated_SNPs_36499 0 0 1 0 2 Ribosome 1 0.500231638533761 0.497356176376342 0.999536722932477 hm5C_site_36119 DeepMRMD:0.497356176376342;iRNA_m5C:0.999536722932477 36120 chr17 4797353 4797353 1 + C T SKCM 4797356 + 4797336 4797376 41 AGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATG AGATCACCGGGACCCAGTCCCCATACGGGGGCGGCACCATG < 41bp 1 0.138173157790719 1 0.2105892598629 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797356 chr17:4797353 nonsynonymous SNV 0.958 0 18 hm5C_associated_SNPs_36500 0 0 1 0 2 Ribosome 1 0.500231643920745 1 0.99953671215851 hm5C_site_36120 DeepMRMD:1;iRNA_m5C:0.99953671215851 36121 chr17 4797353 4797353 1 + C T SKCM 4797357 + 4797337 4797377 41 GATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATGG GATCACCGGGACCCAGTCCCCATACGGGGGCGGCACCATGG < 41bp 1 0.171020772213633 1 0.413295984268188 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797357 chr17:4797353 nonsynonymous SNV 0.958 0 17 hm5C_associated_SNPs_36501 0 0 1 0 2 Ribosome 1 0.500231165063258 1 0.999537669873484 hm5C_site_36121 DeepMRMD:1;iRNA_m5C:0.999537669873484 36122 chr17 4797353 4797353 1 + C T SKCM 4797367 + 4797347 4797387 41 ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG ACCCAGTCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG < 41bp 1 0.431597919530554 1 0.250224709510803 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797367 chr17:4797353 nonsynonymous SNV 0.958 0 7 hm5C_associated_SNPs_36502 0 0 1 0 2 Ribosome 1 0.500231643932889 1 0.999536712134222 hm5C_site_36122 DeepMRMD:1;iRNA_m5C:0.999536712134222 36123 chr1 151006643 151006643 1 + C T SKCM 151006659 + 151006639 151006679 41 GAGGCCGTCTTCGAGAAGTGCAGTCAGATCTCACTGTCACA GAGGTCGTCTTCGAGAAGTGCAGTCAGATCTCACTGTCACA < 41bp 1 0.0986524049538297 1 0.120564043521881 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:151006659 chr1:151006643 nonsynonymous SNV 0.078 0 5 hm5C_associated_SNPs_36503 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_36123 DeepMRMD:1;iRNA_m5C:0.999536712157815 36124 chr11 119054017 119054017 1 + C T SKCM 119054023 + 119054003 119054043 41 GGGTTCAGCGACACCTTGAGCTCCTACTGCGGGATCTGGAA GGGTTCAGCGACACTTTGAGCTCCTACTGCGGGATCTGGAA < 41bp 1 0.309582499855768 1 0.122224867343903 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119054023 chr11:119054017 nonsynonymous SNV 0.385 4 15 hm5C_associated_SNPs_36504 0 0 0 0 0 exosome 1 0.500231643921101 1 0.999536712157798 hm5C_site_36124 DeepMRMD:1;iRNA_m5C:0.999536712157798 36125 chr2 171822318 171822318 1 + C T SKCM 171822305 + 171822285 171822325 41 CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTCCATGCCT CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTTCATGCCT < 41bp 1 0.126908342396143 1 0.186436146497726 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171822305 chr2:171822318 nonsynonymous SNV 0.964 1 34 hm5C_associated_SNPs_36505 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36125 DeepMRMD:1;iRNA_m5C:0.999536712157815 36126 chr22 41924005 41924005 1 + G A SKCM 41924003 + 41923983 41924023 41 ACAAGCTGACCATTCAGGGCCTGAAGGACTTCACCCCTGGC ACAAGCTGACCATTCAGGGCCTAAAGGACTTCACCCCTGGC < 41bp 1 0.408190871653529 1 0.273971557617188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41924003 chr22:41924005 synonymous SNV . 0 23 hm5C_associated_SNPs_36506 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36126 DeepMRMD:1;iRNA_m5C:0.999536712157815 36127 chr12 110457005 110457005 1 + C T SKCM 110457008 + 110456988 110457028 41 GTCACCACCGAACGCTTCGACCTTTCCCAAGAAATGGAGCG GTCACCACCGAACGCTTTGACCTTTCCCAAGAAATGGAGCG < 41bp 1 0.0224049450839576 1 0.0860740542411804 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110457008 chr12:110457005 synonymous SNV . 0 18 hm5C_associated_SNPs_36507 0 0 1 1 1 chromatin 1 0.500231643859366 1 0.999536712281267 hm5C_site_36127 DeepMRMD:1;iRNA_m5C:0.999536712281267 36128 chr10 24817000 24817000 1 + G A SKCM 24816988 + 24816968 24817008 41 CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTG CAATACCAAATCTGGAGATGCCGCCAGCCACAAGCCCACTG < 41bp 1 0.143944478989609 1 0.0984247922897339 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816988 chr10:24817000 nonsynonymous SNV 0.002 0 33 hm5C_associated_SNPs_36508 0 0 1 0 1 Nucleus 1 0.500231639626888 1 0.999536720746224 hm5C_site_36128 DeepMRMD:1;iRNA_m5C:0.999536720746224 36129 chr10 24817000 24817000 1 + G A SKCM 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAAATCTGGAGATGCCGCCAGCCACAAGCCCACTGCCAA < 41bp 1 0.222668428659934 1 0.685711979866028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24817000 nonsynonymous SNV 0.002 0 29 hm5C_associated_SNPs_36509 0 0 1 0 1 Nucleus 1 0.500231643924027 0.628576040267944 0.999536712151945 hm5C_site_36129 DeepMRMD:0.628576040267944;iRNA_m5C:0.999536712151945 36130 chr19 48833692 48833692 1 + G A SKCM 48833674 + 48833654 48833694 41 CCCTGGCCTGGGTGGCCTTCCCCCTCGCCCTGGTCAGCGGC CCCTGGCCTGGGTGGCCTTCCCCCTCGCCCTGGTCAGCAGC < 41bp 1 0.468256888644021 1 0.222208946943283 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMP3 ENSG00000142227 CDS Human protein_coding chr19:48833674 chr19:48833692 nonsynonymous SNV 0.991 2 39 hm5C_associated_SNPs_36510 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36130 DeepMRMD:1;iRNA_m5C:0.999536712157815 36131 chr17 66039321 66039321 1 + C T SKCM 66039310 + 66039290 66039330 41 TGCTGTTGAGCAGATTCTTCCTACCTTAGTTCGGCTCCTGC TGCTGTTGAGCAGATTCTTCCTACCTTAGTTTGGCTCCTGC < 41bp 1 0.410011685239144 1 0.364116013050079 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66039310 chr17:66039321 nonsynonymous SNV 0.939 0 32 hm5C_associated_SNPs_36512 0 0 1 0 0 Cytosol 1 0.500231525283787 1 0.999536949432426 hm5C_site_36131 DeepMRMD:1;iRNA_m5C:0.999536949432426 36132 chr10 12162807 12162807 1 + C T SKCM 12162801 + 12162781 12162821 41 TATAGCTCCGTCTGGTGGGCCGGCCCCCTTTGCCAGTACCC TATAGCTCCGTCTGGTGGGCCGGCCCTCTTTGCCAGTACCC < 41bp 1 0.197946506081859 1 0.650230348110199 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12162801 chr10:12162807 nonsynonymous SNV 0.982 0 27 hm5C_associated_SNPs_36513 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.699539303779602 0.999536712157815 hm5C_site_36132 DeepMRMD:0.699539303779602;iRNA_m5C:0.999536712157815 36133 chrX 73046482 73046482 1 + C T SKCM 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACCTGGGGAAATCCCAAGATAAGAACCCTAAAC < 41bp 1 0.597248496032239 1 0.748787760734558 experiment 0.805503007935522 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046482 . . 0 29 hm5C_associated_SNPs_36514 0 0 1 2 0 unknown 1 0.500231643921093 0.502424478530884 0.999536712157815 hm5C_site_36133 DeepMRMD:0.502424478530884;iRNA_m5C:0.999536712157815 36134 chr7 142460305 142460305 1 + T C SKCM 142460286 + 142460266 142460306 41 TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTG TTCCTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGCG < 41bp 1 0.112142306665799 1 0.310750663280487 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460286 chr7:142460305 nonsynonymous SNV 0.050 5 40 hm5C_associated_SNPs_36515 0 0 0 0 1 Cytosol 1 0.500231643935752 1 0.999536712128496 hm5C_site_36134 DeepMRMD:1;iRNA_m5C:0.999536712128496 36135 chr7 142460305 142460305 1 + T C SKCM 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGCGCCT < 41bp 1 0.151295451918463 1 0.3860142827034 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460305 nonsynonymous SNV 0.050 5 37 hm5C_associated_SNPs_36516 0 0 0 0 1 Cytosol 1 0.500231643969294 1 0.999536712061412 hm5C_site_36135 DeepMRMD:1;iRNA_m5C:0.999536712061412 36136 chr7 142460305 142460305 1 + T C SKCM 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGCGCCTG < 41bp 1 0.489533200467484 1 0.410413950681686 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460305 nonsynonymous SNV 0.050 5 36 hm5C_associated_SNPs_36517 0 0 0 0 1 Cytosol 1 0.500231642973144 1 0.999536714053712 hm5C_site_36136 DeepMRMD:1;iRNA_m5C:0.999536714053712 36137 chr7 142460305 142460305 1 + T C SKCM 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACGAGCTGCAGCGCCTGG < 41bp 1 0.448884647004556 1 0.58944833278656 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460305 nonsynonymous SNV 0.050 5 35 hm5C_associated_SNPs_36518 0 0 0 0 1 Cytosol 1 0.500231643919611 0.82110333442688 0.999536712160777 hm5C_site_36137 DeepMRMD:0.82110333442688;iRNA_m5C:0.999536712160777 36138 chr7 142460305 142460305 1 + T C SKCM 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGCGCCTGGATGC < 41bp 1 0.455081406173557 1 0.350824117660522 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460305 nonsynonymous SNV 0.050 5 31 hm5C_associated_SNPs_36519 0 0 0 0 1 Cytosol 1 0.500231643672464 1 0.999536712655072 hm5C_site_36138 DeepMRMD:1;iRNA_m5C:0.999536712655072 36139 chr7 142460305 142460305 1 + T C SKCM 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGCGCCTGGATGCTCCT < 41bp 1 0.607626216529113 1 0.260604619979858 experiment 0.784747566941773 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460305 nonsynonymous SNV 0.050 5 27 hm5C_associated_SNPs_36520 0 0 0 0 1 Cytosol 1 0.500231643841462 1 0.999536712317077 hm5C_site_36139 DeepMRMD:1;iRNA_m5C:0.999536712317077 36140 chr7 142460305 142460305 1 + T C SKCM 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGCGCCTGGATGCTCCTGTG < 41bp 1 0.495339439492439 1 0.145523816347122 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460305 nonsynonymous SNV 0.050 5 24 hm5C_associated_SNPs_36521 0 0 0 0 1 Cytosol 1 0.500231677621095 1 0.99953664475781 hm5C_site_36140 DeepMRMD:1;iRNA_m5C:0.99953664475781 36141 chr7 142460305 142460305 1 + T C SKCM 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGCGCCTGGATGCTCCTGTGCTGAG < 41bp 1 0.226577104231352 1 0.121395438909531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460305 nonsynonymous SNV 0.050 5 19 hm5C_associated_SNPs_36522 0 0 0 0 1 Cytosol 1 0.500231643921444 1 0.999536712157112 hm5C_site_36141 DeepMRMD:1;iRNA_m5C:0.999536712157112 36142 chr7 142460305 142460305 1 + T C SKCM 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGCGCCTGGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.452810551139431 1 0.224191069602966 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460305 nonsynonymous SNV 0.050 5 11 hm5C_associated_SNPs_36523 0 0 0 0 1 Cytosol 1 0.500231656600786 1 0.999536686798428 hm5C_site_36142 DeepMRMD:1;iRNA_m5C:0.999536686798428 36143 chr7 142460305 142460305 1 + T C SKCM 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGCGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.220720658307164 1 0.19335475564003 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460305 nonsynonymous SNV 0.050 5 9 hm5C_associated_SNPs_36524 0 0 0 0 1 Cytosol 1 0.500231643921362 1 0.999536712157276 hm5C_site_36143 DeepMRMD:1;iRNA_m5C:0.999536712157276 36144 chr7 142460305 142460305 1 + T C SKCM 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGCGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.449862783850093 1 0.222113102674484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460305 nonsynonymous SNV 0.050 5 8 hm5C_associated_SNPs_36525 0 0 0 0 1 Cytosol 1 0.500231643970028 1 0.999536712059944 hm5C_site_36144 DeepMRMD:1;iRNA_m5C:0.999536712059944 36145 chr7 142460305 142460305 1 + T C SKCM 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGCGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.44726807306647 1 0.058578759431839 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460305 nonsynonymous SNV 0.050 5 3 hm5C_associated_SNPs_36526 0 0 0 0 1 Cytosol 1 0.500231643921091 1 0.999536712157817 hm5C_site_36145 DeepMRMD:1;iRNA_m5C:0.999536712157817 36146 chr17 42636670 42636670 1 + G C SKCM 42636652 + 42636632 42636672 41 CTCATGACGCTCATCGTGGGCATCACGTCGGGCTTCTGGAT CTCATGACGCTCATCGTGGGCATCACGTCGGGCTTCTGCAT < 41bp 1 0.294192515178567 1 0.0460450947284698 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FZD2 ENSG00000180340 CDS Human protein_coding chr17:42636652 chr17:42636670 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_36527 0 0 1 0 0 exosome 1 0.500229698431507 1 0.999540603136986 hm5C_site_36146 DeepMRMD:1;iRNA_m5C:0.999540603136986 36147 chr4 38055922 38055922 1 + C T SKCM 38055933 + 38055913 38055953 41 AGTAGCCACCCCGCAGAAGGCGTGCGATTCTTCCAGCAGAT AGTAGCCACTCCGCAGAAGGCGTGCGATTCTTCCAGCAGAT < 41bp 1 0.391496298100445 1 0.346759796142578 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38055933 chr4:38055922 synonymous SNV . 0 10 hm5C_associated_SNPs_36528 0 0 0 0 1 Nucleus 1 0.50023164392068 1 0.99953671215864 hm5C_site_36147 DeepMRMD:1;iRNA_m5C:0.99953671215864 36148 chr17 21215556 21215556 1 + C T SKCM 21215563 + 21215543 21215583 41 GCTCCCAGCCGACCGTTTCTCCCCCGAGTTTGTGGACTTCA GCTCCCAGCCGACTGTTTCTCCCCCGAGTTTGTGGACTTCA < 41bp 1 0.281681579236237 1 0.0679494440555573 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215563 chr17:21215556 nonsynonymous SNV 0.468 3 14 hm5C_associated_SNPs_36529 0 0 0 0 1 Ribosome 1 0.500231643921933 1 0.999536712156134 hm5C_site_36148 DeepMRMD:1;iRNA_m5C:0.999536712156134 36149 chr2 64118256 64118256 1 + A G SKCM 64118258 + 64118238 64118278 41 TTTCCCTGTCACTTAGGGAACGGTTATCATCATTGCAAATC TTTCCCTGTCACTTAGGGGACGGTTATCATCATTGCAAATC < 41bp 1 0.281893001589199 1 0.0305889844894409 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGP2 ENSG00000169764 CDS Human protein_coding chr2:64118258 chr2:64118256 synonymous SNV . 0 19 hm5C_associated_SNPs_36530 0 0 0 0 1 Ribosome 1 0.500231643921078 1 0.999536712157844 hm5C_site_36149 DeepMRMD:1;iRNA_m5C:0.999536712157844 36150 chr17 21215555 21215555 1 + C T SKCM 21215563 + 21215543 21215583 41 GCTCCCAGCCGACCGTTTCTCCCCCGAGTTTGTGGACTTCA GCTCCCAGCCGATCGTTTCTCCCCCGAGTTTGTGGACTTCA < 41bp 1 0.281529015626569 1 0.0602686107158661 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215563 chr17:21215555 synonymous SNV . 0 13 hm5C_associated_SNPs_36531 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_36150 DeepMRMD:1;iRNA_m5C:0.999536712157816 36151 chr11 65561697 65561697 1 + G A SKCM 65561686 + 65561666 65561706 41 CACTTGACAGACCCCCAGAGCAGAGACCATGGCTTCCTGCG CACTTGACAGACCCCCAGAGCAGAGACCATGACTTCCTGCG < 41bp 1 0.436249031117089 1 0.733706831932068 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OVOL1 ENSG00000172818 CDS Human protein_coding chr11:65561686 chr11:65561697 nonsynonymous SNV 0.997 0 32 hm5C_associated_SNPs_36533 0 0 1 0 1 exosome 1 0.500232538085946 0.532586336135864 0.999534923828108 hm5C_site_36151 DeepMRMD:0.532586336135864;iRNA_m5C:0.999534923828108 36152 chr19 1360337 1360337 1 + C T SKCM 1360355 + 1360335 1360375 41 CCCCGCGGAGACGTGTTGGGCAGTTCCAGACCTCACAGGAG CCTCGCGGAGACGTGTTGGGCAGTTCCAGACCTCACAGGAG < 41bp 1 0.291349065505611 1 0.35987663269043 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MUM1 ENSG00000160953 CDS Human protein_coding chr19:1360355 chr19:1360337 synonymous SNV . 0 3 hm5C_associated_SNPs_36534 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36152 DeepMRMD:1;iRNA_m5C:0.999536712157815 36153 chr7 36492118 36492118 1 + G C SKCM 36492117 + 36492097 36492137 41 CTGCAGATACTAAAGAAGAGCGGGATCTCTGGATGCAAAAA CTGCAGATACTAAAGAAGAGCCGGATCTCTGGATGCAAAAA < 41bp 1 0.465180339226284 1 0.266380310058594 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36492117 chr7:36492118 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_36535 0 0 1 0 1 Nucleus 1 0.500231643939887 1 0.999536712120226 hm5C_site_36153 DeepMRMD:1;iRNA_m5C:0.999536712120226 36154 chr19 40715033 40715033 1 + C G SKCM 40715040 + 40715020 40715060 41 TAAGATCACAGTCCAGGCCTCTCCAACTCTGGATAAGCGGA TAAGATCACAGTCGAGGCCTCTCCAACTCTGGATAAGCGGA < 41bp 1 0.267056159841447 1 0.92436957359314 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40715040 chr19:40715033 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_36536 0 0 0 0 2 Endoplasmic reticulum 1 0.500231641257731 0.15126085281372 0.999536717484537 hm5C_site_36154 DeepMRMD:0.15126085281372;iRNA_m5C:0.999536717484537 36155 chr10 51863872 51863872 1 + T C SKCM 51863880 + 51863860 51863900 41 AGCTCCCCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA AGCTCCCCACGTCGGTTTCCCTGTTTGATGATGAAGATGAA < 41bp 1 0.133951376084225 1 0.134731590747833 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51863880 chr10:51863872 nonsynonymous SNV 0.002 0 13 hm5C_associated_SNPs_36537 0 0 1 0 2 unknown 1 0.500231643920942 1 0.999536712158116 hm5C_site_36155 DeepMRMD:1;iRNA_m5C:0.999536712158116 36156 chr17 55194237 55194237 1 + C A SKCM 55194240 + 55194220 55194260 41 GGTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTC GGTCTGACTTTGTCACCATGCCGTTTCAGGGAGCAGAAGTC < 41bp 1 0.080167237333456 1 0.217909842729568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194240 chr17:55194237 nonsynonymous SNV 0.997 4 18 hm5C_associated_SNPs_36538 0 0 1 0 2 Endoplasmic reticulum 1 0.500231471625543 1 0.999537056748913 hm5C_site_36156 DeepMRMD:1;iRNA_m5C:0.999537056748913 36157 chr17 55194237 55194237 1 + C A SKCM 55194241 + 55194221 55194261 41 GTCTGACTTTGTCACCCTGCCGTTTCAGGGAGCAGAAGTCC GTCTGACTTTGTCACCATGCCGTTTCAGGGAGCAGAAGTCC < 41bp 1 0.0563604776175547 1 0.0478800535202026 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194241 chr17:55194237 nonsynonymous SNV 0.997 4 17 hm5C_associated_SNPs_36539 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921123 1 0.999536712157754 hm5C_site_36157 DeepMRMD:1;iRNA_m5C:0.999536712157754 36158 chr17 55194237 55194237 1 + C A SKCM 55194253 + 55194233 55194273 41 CACCCTGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG CACCATGCCGTTTCAGGGAGCAGAAGTCCTTCTGGACAGTG < 41bp 1 0.532145928092293 1 0.484088659286499 experiment 0.935708143815414 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55194253 chr17:55194237 nonsynonymous SNV 0.997 4 5 hm5C_associated_SNPs_36540 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36158 DeepMRMD:1;iRNA_m5C:0.999536712157815 36159 chr11 117280347 117280347 1 + G T SKCM 117280351 + 117280331 117280371 41 CAGTCGACTCAACCCCGAGTCTCACCTCCCGCAAGATCCAC CAGTCGACTCAACCCCTAGTCTCACCTCCCGCAAGATCCAC < 41bp 1 0.191364688620508 1 0.0474931299686432 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP164 ENSG00000110274 CDS Human protein_coding chr11:117280351 chr11:117280347 synonymous SNV . 0 17 hm5C_associated_SNPs_36541 0 0 1 0 1 Cytosol 1 0.500231643869355 1 0.99953671226129 hm5C_site_36159 DeepMRMD:1;iRNA_m5C:0.99953671226129 36160 chr1 46827401 46827401 1 + G C SKCM 46827413 + 46827393 46827433 41 TTCCGAAGGGTTTTCATGGACACATTTTGTTTCTTCTCATC TTCCGAAGCGTTTTCATGGACACATTTTGTTTCTTCTCATC < 41bp 1 0.350318182283029 1 0.0614575445652008 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NSUN4 ENSG00000117481 CDS Human protein_coding chr1:46827413 chr1:46827401 nonsynonymous SNV 0.997 0 9 hm5C_associated_SNPs_36542 0 0 1 0 0 Cytosol 1 0.500231650422877 1 0.999536699154247 hm5C_site_36160 DeepMRMD:1;iRNA_m5C:0.999536699154247 36161 chr8 100519370 100519370 1 + G C SKCM 100519390 + 100519370 100519410 41 GGGAAGGTTGGCAGTCAGGACATTTTGAAGGAGTATTTCTA CGGAAGGTTGGCAGTCAGGACATTTTGAAGGAGTATTTCTA < 41bp 1 0.0091512374746645 1 0.0653398334980011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100519390 chr8:100519370 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_36544 0 0 0 0 2 Nucleus 1 0.500231643910415 1 0.99953671217917 hm5C_site_36161 DeepMRMD:1;iRNA_m5C:0.99953671217917 36162 chr12 2906442 2906442 1 + G C SKCM 2906431 + 2906411 2906451 41 GGATCGCAAGGACAAATTCTCCTTTGACCTGGGAAAAGGTA GGATCGCAAGGACAAATTCTCCTTTGACCTGCGAAAAGGTA < 41bp 1 0.0404446416153519 1 0.0297217667102814 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2906431 chr12:2906442 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_36545 0 0 1 0 1 Ribosome 1 0.500231644670458 1 0.999536710659084 hm5C_site_36162 DeepMRMD:1;iRNA_m5C:0.999536710659084 36163 chr7 134215404 134215404 1 + G T SKCM 134215396 + 134215376 134215416 41 CTTTTCTTTTGCCTTTCAGTCTCCTCTTGGCAAAGTGAAAG CTTTTCTTTTGCCTTTCAGTCTCCTCTTTGCAAAGTGAAAG < 41bp 1 0.232933679188929 1 0.272315561771393 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215396 chr7:134215404 nonsynonymous SNV 0.023 3 29 hm5C_associated_SNPs_36546 0 0 1 0 1 exosome 1 0.500230982847755 1 0.999538034304491 hm5C_site_36163 DeepMRMD:1;iRNA_m5C:0.999538034304491 36164 chr20 37154673 37154673 1 + C A SKCM 37154672 + 37154652 37154692 41 GAAACGGACCCCAACAACACCCAAATGATATTAGGTTTGTA GAAACGGACCCCAACAACACCAAAATGATATTAGGTTTGTA < 41bp 1 0.207900311673923 1 0.443513035774231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37154672 chr20:37154673 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_36547 0 0 1 0 1 Nucleus 1 0.500231649242623 1 0.999536701514753 hm5C_site_36164 DeepMRMD:1;iRNA_m5C:0.999536701514753 36165 chr1 228879182 228879182 1 + C T SKCM 228879178 + 228879158 228879198 41 CACTGTCCCAAAGCCCCCATCATCCTAGTTGGAACGCAGTC CACTGTCCCAAAGCCCCCATCATCTTAGTTGGAACGCAGTC < 41bp 1 0.14798939569842 1 0.121159911155701 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOU ENSG00000116574 CDS Human protein_coding chr1:228879178 chr1:228879182 synonymous SNV . 0 25 hm5C_associated_SNPs_36548 0 0 1 0 0 Ribosome 1 0.500231643921081 1 0.999536712157837 hm5C_site_36165 DeepMRMD:1;iRNA_m5C:0.999536712157837 36166 chr21 34635141 34635141 1 + C G SKCM 34635140 + 34635120 34635160 41 GGCCATTTCCTAACCTGCCACCGTTGGAAGCCATGGATATG GGCCATTTCCTAACCTGCCACGGTTGGAAGCCATGGATATG < 41bp 1 0.107896090190869 1 0.060190349817276 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34635140 chr21:34635141 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_36549 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157813 hm5C_site_36166 DeepMRMD:1;iRNA_m5C:0.999536712157813 36167 chr20 37159863 37159863 1 + C G SKCM 37159852 + 37159832 37159872 41 AGATTCAGCACTTTTGGAAGCCATTGGTTGCCAGATGGAGA AGATTCAGCACTTTTGGAAGCCATTGGTTGCGAGATGGAGA < 41bp 1 0.0203154217039444 1 0.102235436439514 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37159852 chr20:37159863 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_36550 0 0 1 0 2 Nucleus 1 0.500231643265091 1 0.999536713469818 hm5C_site_36167 DeepMRMD:1;iRNA_m5C:0.999536713469818 36168 chr10 51863866 51863866 1 + C G SKCM 51863880 + 51863860 51863900 41 AGCTCCCCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA AGCTCCGCACGTTGGTTTCCCTGTTTGATGATGAAGATGAA < 41bp 1 0.141366576963284 1 0.106025338172913 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51863880 chr10:51863866 nonsynonymous SNV 0.008 0 7 hm5C_associated_SNPs_36551 0 0 1 0 2 unknown 1 0.500231643856582 1 0.999536712286835 hm5C_site_36168 DeepMRMD:1;iRNA_m5C:0.999536712286835 36169 chrX 73046538 73046538 1 + G T SKCM 73046526 - 73046506 73046546 41 TGGAGGCCCATGACCCAGAACCCAGGAAGGATAGAAGCTTG TGGAGGCCAATGACCCAGAACCCAGGAAGGATAGAAGCTTG < 41bp 1 0.186254145131624 1 0.27326512336731 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046526 chrX:73046538 . . 0 9 hm5C_associated_SNPs_36552 0 0 1 2 0 unknown 1 0.500231643921096 1 0.999536712157807 hm5C_site_36169 DeepMRMD:1;iRNA_m5C:0.999536712157807 36170 chrX 73046538 73046538 1 + G T SKCM 73046532 - 73046512 73046552 41 GGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGA GGAATCTGGAGGCCAATGACCCAGAACCCAGGAAGGATAGA < 41bp 1 0.296232177179573 1 0.399207472801208 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046532 chrX:73046538 . . 0 15 hm5C_associated_SNPs_36553 0 0 1 2 0 unknown 1 0.500231643921089 1 0.999536712157822 hm5C_site_36170 DeepMRMD:1;iRNA_m5C:0.999536712157822 36171 chrX 73046538 73046538 1 + G T SKCM 73046533 - 73046513 73046553 41 CGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAG CGGAATCTGGAGGCCAATGACCCAGAACCCAGGAAGGATAG < 41bp 1 0.281323794541134 1 0.321939051151276 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046533 chrX:73046538 . . 0 16 hm5C_associated_SNPs_36554 0 0 1 2 0 unknown 1 0.500231643922872 1 0.999536712154255 hm5C_site_36171 DeepMRMD:1;iRNA_m5C:0.999536712154255 36172 chrX 73046538 73046538 1 + G T SKCM 73046539 - 73046519 73046559 41 AACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAA AACGGCCGGAATCTGGAGGCCAATGACCCAGAACCCAGGAA < 41bp 1 0.172118364384849 1 0.445540517568588 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046539 chrX:73046538 . . 0 22 hm5C_associated_SNPs_36555 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_36172 DeepMRMD:1;iRNA_m5C:0.999536712157815 36173 chr8 42220189 42220189 1 + C G SKCM 42220194 + 42220174 42220214 41 TTTTATCACAGATACCCTGTCAAAGGGTGAGACAAAGTTCA TTTTATCACAGATACGCTGTCAAAGGGTGAGACAAAGTTCA < 41bp 1 0.495061313630176 1 0.701883614063263 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLB ENSG00000070501 CDS Human protein_coding chr8:42220194 chr8:42220189 synonymous SNV . 0 16 hm5C_associated_SNPs_36556 0 0 1 0 2 Cytosol 1 0.500231644126655 0.596232771873474 0.999536711746691 hm5C_site_36173 DeepMRMD:0.596232771873474;iRNA_m5C:0.999536711746691 36174 chrX 21995222 21995222 1 + C T SKCM 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGTCCA < 41bp 1 0.141518856760779 1 0.250954389572144 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995222 nonsynonymous SNV 0.941 4 38 hm5C_associated_SNPs_36557 0 0 1 0 1 Ribosome 1 0.500231643921089 1 0.999536712157822 hm5C_site_36174 DeepMRMD:1;iRNA_m5C:0.999536712157822 36175 chr19 41758839 41758839 1 + C T SKCM 41758850 + 41758830 41758870 41 ACACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAG ACACAGCTTTCTCCTCTATTCCCGGCTCGGGGACCAGCCAG < 41bp 1 0.611617025282362 1 0.301195681095123 experiment 0.776765949435275 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758850 chr19:41758839 synonymous SNV . 0 10 hm5C_associated_SNPs_36558 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36175 DeepMRMD:1;iRNA_m5C:0.999536712157815 36176 chr19 41758839 41758839 1 + C T SKCM 41758851 + 41758831 41758871 41 CACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT CACAGCTTTCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT < 41bp 1 0.195068261021293 1 0.239990919828415 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758851 chr19:41758839 synonymous SNV . 0 9 hm5C_associated_SNPs_36559 0 0 1 0 2 Nucleus 1 0.500231697902789 1 0.999536604194421 hm5C_site_36176 DeepMRMD:1;iRNA_m5C:0.999536604194421 36177 chr19 10794134 10794134 1 + C T SKCM 10794136 + 10794116 10794156 41 TGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTG TGCCCTAGAAAAGCTTTTTCCTGACACCCCTCTCGCCCTTG < 41bp 1 0.406524107415439 1 0.178416550159454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794136 chr19:10794134 synonymous SNV . 0 19 hm5C_associated_SNPs_36560 0 0 1 0 2 Cytosol 1 0.500231643930747 1 0.999536712138505 hm5C_site_36177 DeepMRMD:1;iRNA_m5C:0.999536712138505 36178 chr19 10794134 10794134 1 + C T SKCM 10794142 + 10794122 10794162 41 AGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCA AGAAAAGCTTTTTCCTGACACCCCTCTCGCCCTTGATGCCA < 41bp 1 0.189132670153017 1 0.0315176248550415 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794142 chr19:10794134 synonymous SNV . 0 13 hm5C_associated_SNPs_36561 0 0 1 0 2 Cytosol 1 0.500231643921136 1 0.999536712157727 hm5C_site_36178 DeepMRMD:1;iRNA_m5C:0.999536712157727 36179 chr2 207174867 207174867 1 + G A SKCM 207174847 + 207174827 207174867 41 TTTGATGATGACTGTGAGACCAAAAAAGTTTCTTCGAAGGG TTTGATGATGACTGTGAGACCAAAAAAGTTTCTTCGAAGGA < 41bp 1 0.456772507921862 1 0.170725733041763 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207174847 chr2:207174867 nonsynonymous SNV 0.001 0 41 hm5C_associated_SNPs_36562 0 0 1 0 0 Nucleus 1 0.500231643920079 1 0.999536712159842 hm5C_site_36179 DeepMRMD:1;iRNA_m5C:0.999536712159842 36180 chr19 11660378 11660378 1 + C T STAD 11660370 + 11660350 11660390 41 CACCACCCTTCGCAGGCTGGCATGACTGCGCCAGGGACCAA CACCACCCTTCGCAGGCTGGCATGACTGTGCCAGGGACCAA < 41bp 1 0.689737700805291 1 0.0487708747386932 experiment 0.620524598389418 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNN1 ENSG00000130176 CDS Human protein_coding chr19:11660370 chr19:11660378 nonsynonymous SNV 0.909 4 29 hm5C_associated_SNPs_36563 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36180 DeepMRMD:1;iRNA_m5C:0.999536712157815 36181 chr13 42874908 42874908 1 + T G STAD 42874915 + 42874895 42874935 41 TGCATCTCCACAGTGTGGGTCGTTTGACTTTGAAGACAAAG TGCATCTCCACAGGGTGGGTCGTTTGACTTTGAAGACAAAG < 41bp 1 0.0295120083689809 1 0.186014115810394 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP11 ENSG00000023516 CDS Human protein_coding chr13:42874915 chr13:42874908 nonsynonymous SNV 0.667 0 14 hm5C_associated_SNPs_36564 0 0 1 0 0 Nucleus 1 0.500232142304777 1 0.999535715390446 hm5C_site_36181 DeepMRMD:1;iRNA_m5C:0.999535715390446 36182 chr15 76630254 76630254 1 + C T STAD 76630260 + 76630240 76630280 41 GTACCTGGACGAGACGTGCACGTGCTTCGTGAGAGACGGGA GTACCTGGACGAGATGTGCACGTGCTTCGTGAGAGACGGGA < 41bp 1 0.30850342408602 1 0.393552213907242 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630260 chr15:76630254 nonsynonymous SNV 0.999 5 15 hm5C_associated_SNPs_36565 0 0 1 0 1 Cytosol 1 0.500231650651505 1 0.99953669869699 hm5C_site_36182 DeepMRMD:1;iRNA_m5C:0.99953669869699 36183 chr9 133355792 133355792 1 + G A STAD 133355811 + 133355791 133355831 41 CGTATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC CATATTGACATCGTGGAGAACCGCTTCATTGGAATGAAGTC < 41bp 1 0.111804999385471 1 0.0943539440631866 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ASS1 ENSG00000130707 CDS Human protein_coding chr9:133355811 chr9:133355792 nonsynonymous SNV 0.962 3 2 hm5C_associated_SNPs_36566 1 0 1 0 2 Ribosome 1 0.50023164410443 1 0.999536711791141 hm5C_site_36183 DeepMRMD:1;iRNA_m5C:0.999536711791141 Citrullinemia type I Citrullinemia type I 36184 chr14 20822321 20822321 1 + G T STAD 20822301 + 20822281 20822321 41 CTCCCTTGAAGCCAGAGTCACAGCTAGATCTTCGGGTACAG CTCCCTTGAAGCCAGAGTCACAGCTAGATCTTCGGGTACAT < 41bp 1 0.406760768269984 1 0.231780916452408 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARP2 ENSG00000129484 CDS Human protein_coding chr14:20822301 chr14:20822321 nonsynonymous SNV 0.839 3 41 hm5C_associated_SNPs_36567 0 0 1 0 1 Cytosol 1 0.500231659515468 1 0.999536680969064 hm5C_site_36184 DeepMRMD:1;iRNA_m5C:0.999536680969064 36185 chr12 56536156 56536156 1 + T C STAD 56536138 + 56536118 56536158 41 CAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCTGG CAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCCGG < 41bp 1 0.448552551713576 1 0.315354406833649 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536138 chr12:56536156 nonsynonymous SNV 0.108 2 39 hm5C_associated_SNPs_36568 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643927838 1 0.999536712144323 hm5C_site_36185 DeepMRMD:1;iRNA_m5C:0.999536712144323 36186 chr17 80012606 80012606 1 + G A STAD 80012597 + 80012577 80012617 41 ACTACCTGGACTGTGGGGACCTCAGCAACGCCCTCAAGTGC ACTACCTGGACTGTGGGGACCTCAGCAACACCCTCAAGTGC < 41bp 1 0.591446759034854 1 0.245601236820221 experiment 0.817106481930291 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GPS1 ENSG00000169727 CDS Human protein_coding chr17:80012597 chr17:80012606 nonsynonymous SNV 0.998 5 30 hm5C_associated_SNPs_36569 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_36186 DeepMRMD:1;iRNA_m5C:0.999536712157816 36187 chr17 61907726 61907726 1 + G A STAD 61907746 + 61907726 61907766 41 GGTGGAGAAAGTACCAGATTCAACTTATGAGATGATTGGTG AGTGGAGAAAGTACCAGATTCAACTTATGAGATGATTGGTG < 41bp 1 0.417165571098142 1 0.375491410493851 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907746 chr17:61907726 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_36570 0 0 1 0 1 Ribosome 1 0.500231692415385 1 0.99953661516923 hm5C_site_36187 DeepMRMD:1;iRNA_m5C:0.99953661516923 36188 chr4 20568977 20568977 1 + T G STAD 20568982 + 20568962 20569002 41 AGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGG AGTGATCCAGTTGACGTTTACCGATGCACCTGTCCATATGG < 41bp 1 0.121157058187359 1 0.559580445289612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568982 chr4:20568977 nonsynonymous SNV 0.997 2 16 hm5C_associated_SNPs_36571 0 0 1 0 2 Ribosome 1 0.500231643920949 0.880839109420776 0.999536712158101 hm5C_site_36188 DeepMRMD:0.880839109420776;iRNA_m5C:0.999536712158101 36189 chr4 20568977 20568977 1 + T G STAD 20568983 + 20568963 20569003 41 GTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGT GTGATCCAGTTGACGTTTACCGATGCACCTGTCCATATGGT < 41bp 1 0.14809053373071 1 0.560909390449524 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568983 chr4:20568977 nonsynonymous SNV 0.997 2 15 hm5C_associated_SNPs_36572 0 0 1 0 2 Ribosome 1 0.497599973934325 0.878181219100952 1 hm5C_site_36189 DeepMRMD:0.878181219100952;iRNA_m5C:1 36190 chr2 32668623 32668623 1 + A G STAD 32668612 + 32668592 32668632 41 TGGACCTGTTCTGTTGAAGGCTTTACTTGATAATATGTCAT TGGACCTGTTCTGTTGAAGGCTTTACTTGATGATATGTCAT < 41bp 1 0.0433821810209544 1 0.107101768255234 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32668612 chr2:32668623 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_36573 0 0 1 0 2 Nucleus 1 0.50023162815138 1 0.999536743697241 hm5C_site_36190 DeepMRMD:1;iRNA_m5C:0.999536743697241 36191 chr7 39991418 39991418 1 + G A STAD 39991410 + 39991390 39991430 41 CCTAGTCCCTACAGCAGCAGCAGCTGGCGCCGCTCTCGCAG CCTAGTCCCTACAGCAGCAGCAGCTGGCACCGCTCTCGCAG < 41bp 1 0.541407111205082 1 0.412324011325836 experiment 0.917185777589837 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:39991410 chr7:39991418 nonsynonymous SNV 0.938 3 29 hm5C_associated_SNPs_36574 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_36191 DeepMRMD:1;iRNA_m5C:0.999536712157815 36192 chr7 39991418 39991418 1 + G A STAD 39991428 + 39991408 39991448 41 AGCAGCTGGCGCCGCTCTCGCAGTCCCTACAGCCCTGTGCT AGCAGCTGGCACCGCTCTCGCAGTCCCTACAGCCCTGTGCT < 41bp 1 0.20977966047927 1 0.745945274829865 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:39991428 chr7:39991418 nonsynonymous SNV 0.938 3 11 hm5C_associated_SNPs_36575 0 0 1 0 1 Nucleus 1 0.500231643949688 0.50810945034027 0.999536712100624 hm5C_site_36192 DeepMRMD:0.50810945034027;iRNA_m5C:0.999536712100624 36193 chr7 99725164 99725164 1 + C T STAD 99725178 + 99725158 99725198 41 TCCTACCCCAGACCCGGGGCCCGGCCTCCAGCCACCGAGAG TCCTACTCCAGACCCGGGGCCCGGCCTCCAGCCACCGAGAG < 41bp 1 0.368607630303457 1 0.435442000627518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MBLAC1 ENSG00000214309 CDS Human protein_coding chr7:99725178 chr7:99725164 nonsynonymous SNV 0.027 3 7 hm5C_associated_SNPs_36577 0 0 1 0 0 chromatin 1 0.500231643912544 1 0.999536712174912 hm5C_site_36193 DeepMRMD:1;iRNA_m5C:0.999536712174912 36194 chr22 38470973 38470973 1 + A C STAD 38470992 + 38470972 38471012 41 GAGGTAGACCTGGCGCACACCACATTGGCCTATGGCCTCAA GCGGTAGACCTGGCGCACACCACATTGGCCTATGGCCTCAA < 41bp 1 0.567758727290524 1 0.681569695472717 experiment 0.864482545418952 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PICK1 ENSG00000100151 CDS Human protein_coding chr22:38470992 chr22:38470973 nonsynonymous SNV 0.997 4 2 hm5C_associated_SNPs_36578 0 0 1 0 0 Ribosome 1 0.500231643810633 0.636860609054566 0.999536712378735 hm5C_site_36194 DeepMRMD:0.636860609054566;iRNA_m5C:0.999536712378735 36195 chr3 157841666 157841666 1 + G C STAD 157841658 + 157841638 157841678 41 ATTATATTTTATTTCAGACGCAGGCATCGATCAAGCAGTAG ATTATATTTTATTTCAGACGCAGGCATCCATCAAGCAGTAG < 41bp 1 0.337263201986059 1 0.212467461824417 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841658 chr3:157841666 nonsynonymous SNV 0.999 4 29 hm5C_associated_SNPs_36579 0 0 1 0 1 Ribosome 1 0.500231643904033 1 0.999536712191935 hm5C_site_36195 DeepMRMD:1;iRNA_m5C:0.999536712191935 36196 chr3 157841666 157841666 1 + G C STAD 157841665 + 157841645 157841685 41 TTTATTTCAGACGCAGGCATCGATCAAGCAGTAGCTCTTCT TTTATTTCAGACGCAGGCATCCATCAAGCAGTAGCTCTTCT < 41bp 1 0.0337983934261383 1 0.0768753886222839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841665 chr3:157841666 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_36580 0 0 1 0 1 Ribosome 1 0.500231643972823 1 0.999536712054353 hm5C_site_36196 DeepMRMD:1;iRNA_m5C:0.999536712054353 36197 chr4 154216639 154216639 1 + C T STAD 154216623 + 154216603 154216643 41 AACGAGCTGGCCGACCAGGACTTCCCCTTGCACCCGCGGGA AACGAGCTGGCCGACCAGGACTTCCCCTTGCACCCGTGGGA < 41bp 1 0.10370450256919 1 0.0489517748355865 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154216623 chr4:154216639 nonsynonymous SNV 0.831 1 37 hm5C_associated_SNPs_36581 0 0 0 0 0 Ribosome 1 0.500231643921028 1 0.999536712157944 hm5C_site_36197 DeepMRMD:1;iRNA_m5C:0.999536712157944 36198 chr19 18729278 18729278 1 + G A STAD 18729284 + 18729264 18729304 41 ACCCTGGTGACCGCGCCTGGCCAGCACCTCAAGTTCCAGGT ACCCTGGTGACCGCACCTGGCCAGCACCTCAAGTTCCAGGT < 41bp 1 0.222687025657753 1 0.177186816930771 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729284 chr19:18729278 synonymous SNV . 0 15 hm5C_associated_SNPs_36582 0 0 1 0 2 Cytosol 1 0.500231643927727 1 0.999536712144547 hm5C_site_36198 DeepMRMD:1;iRNA_m5C:0.999536712144547 36199 chr8 145065717 145065717 1 + T C STAD 145065698 + 145065678 145065718 41 AAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTC AAGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTCC < 41bp 1 0.183378354931208 1 0.076710432767868 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065698 chr8:145065717 nonsynonymous SNV 0.986 1 40 hm5C_associated_SNPs_36584 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36199 DeepMRMD:1;iRNA_m5C:0.999536712157815 36200 chr8 145065717 145065717 1 + T C STAD 145065699 + 145065679 145065719 41 AGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTTCC AGGGGGCTACCCCCAGGGGCCATATCCCCAGAGCCCCTCCC < 41bp 1 0.186655864532448 1 0.11325865983963 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065699 chr8:145065717 nonsynonymous SNV 0.986 1 39 hm5C_associated_SNPs_36585 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921289 1 0.999536712157422 hm5C_site_36200 DeepMRMD:1;iRNA_m5C:0.999536712157422 36201 chr11 61491019 61491019 1 + C T STAD 61491024 + 61491004 61491044 41 ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCG ACCAAGAGGAGGCAGTGTAACCTGCGGACCTACAACCTGCG < 41bp 1 0.107408033710381 1 0.16295063495636 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491024 chr11:61491019 nonsynonymous SNV 0.995 4 16 hm5C_associated_SNPs_36586 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921087 1 0.999536712157825 hm5C_site_36201 DeepMRMD:1;iRNA_m5C:0.999536712157825 36202 chr17 59482051 59482051 1 + G A STAD 59482065 + 59482045 59482085 41 CTCGTCGTGCGACCCTCCCCCCGCGCGGGAACCACCCACCT CTCGTCATGCGACCCTCCCCCCGCGCGGGAACCACCCACCT < 41bp 1 0.435488728673533 1 0.583490490913391 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482065 chr17:59482051 synonymous SNV . 0 7 hm5C_associated_SNPs_36587 0 0 0 0 2 Cytosol 1 0.500231644281902 0.833019018173218 0.999536711436195 hm5C_site_36202 DeepMRMD:0.833019018173218;iRNA_m5C:0.999536711436195 36203 chr9 127561679 127561679 1 + A G STAD 127561684 + 127561664 127561704 41 TGCTGGGCATCAAGAAGGAGCTGTCCCGCCTGGGCCTCCAG TGCTGGGCATCAAGAGGGAGCTGTCCCGCCTGGGCCTCCAG < 41bp 1 0.0894582822912715 1 0.17450624704361 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OLFML2A ENSG00000185585 CDS Human protein_coding chr9:127561684 chr9:127561679 nonsynonymous SNV 0.999 3 16 hm5C_associated_SNPs_36589 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36203 DeepMRMD:1;iRNA_m5C:0.999536712157815 36204 chr20 47582545 47582545 1 + G A STAD 47582558 + 47582538 47582578 41 CCTTGTCGTCAGCAGATAATCTGGTATGTTGGTGATCATCC CCTTGTCATCAGCAGATAATCTGGTATGTTGGTGATCATCC < 41bp 1 0.653798470134631 1 0.0766105353832245 experiment 0.692403059730737 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47582558 chr20:47582545 synonymous SNV . 0 8 hm5C_associated_SNPs_36590 0 0 1 0 1 Cytosol 1 0.500228499475031 1 0.999543001049937 hm5C_site_36204 DeepMRMD:1;iRNA_m5C:0.999543001049937 36205 chr7 2290630 2290630 1 + G A STAD 2290643 + 2290623 2290663 41 TGGACACGGTCTAGCGGGAGCCCAGGGCAGCCCCTGGGCAG TGGACACAGTCTAGCGGGAGCCCAGGGCAGCCCCTGGGCAG < 41bp 1 0.6372151144522 1 0.380174964666367 experiment 0.7255697710956 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUDT1 ENSG00000106268 CDS Human protein_coding chr7:2290643 chr7:2290630 synonymous SNV . 0 8 hm5C_associated_SNPs_36591 0 0 1 0 0 Ribosome 1 0.500231643930532 1 0.999536712138936 hm5C_site_36205 DeepMRMD:1;iRNA_m5C:0.999536712138936 36206 chr11 93494790 93494790 1 + T C STAD 93494810 + 93494790 93494830 41 TACCTGCAGAGTTTCTCTATCGCATTGATCAACCAAAAGAG CACCTGCAGAGTTTCTCTATCGCATTGATCAACCAAAAGAG < 41bp 1 0.5372253500952 1 0.0743026733398438 experiment 0.9255492998096 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93494810 chr11:93494790 nonsynonymous SNV 0.995 0 1 hm5C_associated_SNPs_36593 0 0 1 0 0 Cytosol 1 0.500234505869437 1 0.999530988261125 hm5C_site_36206 DeepMRMD:1;iRNA_m5C:0.999530988261125 36207 chrX 107834414 107834414 1 + C T STAD 107834422 + 107834402 107834442 41 AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT AGCCTGGGGCTCTTGGGCTTCCAGGGCCTCCTGGCCCTGCT < 41bp 1 0.624271626235516 1 0.932164907455444 experiment 0.751456747528968 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107834422 chrX:107834414 nonsynonymous SNV 0.999 5 13 hm5C_associated_SNPs_36594 0 0 1 0 1 Ribosome 1 0.500231643921092 0.135670185089112 0.999536712157815 hm5C_site_36207 DeepMRMD:0.135670185089112;iRNA_m5C:0.999536712157815 36208 chr17 18832189 18832189 1 + A G STAD 18832171 + 18832151 18832191 41 TTTCTTGCTGCAGCAGAGACCCTGAAGGAAAGAGGTGCATA TTTCTTGCTGCAGCAGAGACCCTGAAGGAAAGAGGTGCGTA < 41bp 1 0.36771001986785 1 0.159948170185089 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18832171 chr17:18832189 synonymous SNV . 0 39 hm5C_associated_SNPs_36595 0 0 1 0 2 Ribosome 1 0.500231643919974 1 0.999536712160052 hm5C_site_36208 DeepMRMD:1;iRNA_m5C:0.999536712160052 36209 chr18 72344625 72344625 1 + C A STAD 72344610 + 72344590 72344630 41 AATAGGACAGATTTGGAAATCCATGTGAAAAGGTGCCATGC AATAGGACAGATTTGGAAATCCATGTGAAAAGGTGACATGC < 41bp 1 0.12930186489111 1 0.240479439496994 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF407 ENSG00000215421 CDS Human protein_coding chr18:72344610 chr18:72344625 stopgain 0.004 0 36 hm5C_associated_SNPs_36596 0 0 1 0 0 Cytosol 1 0.500231643915335 1 0.99953671216933 hm5C_site_36209 DeepMRMD:1;iRNA_m5C:0.99953671216933 36210 chr17 48557338 48557338 1 + C T STAD 48557327 + 48557307 48557347 41 CCTGGAGGCTGTGGCACAGGCAGCCCACCTGCCTGCAGACT CCTGGAGGCTGTGGCACAGGCAGCCCACCTGTCTGCAGACT < 41bp 1 0.506247702076612 1 0.37444144487381 experiment 0.987504595846777 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48557327 chr17:48557338 nonsynonymous SNV 0.991 1 32 hm5C_associated_SNPs_36597 0 0 1 0 0 Ribosome 1 0.500231643921062 1 0.999536712157877 hm5C_site_36210 DeepMRMD:1;iRNA_m5C:0.999536712157877 36211 chr2 231327216 231327216 1 + C T STAD 231327230 + 231327210 231327250 41 TCTCAGCACCGAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG TCTCAGTACCGAGAAGTGAGCCTGGTAAGGAAGTTTGGGAG < 41bp 1 0.425095986104199 1 0.320703268051147 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SP100 ENSG00000067066 CDS Human protein_coding chr2:231327230 chr2:231327216 nonsynonymous SNV 0.001 0 7 hm5C_associated_SNPs_36598 0 0 1 0 2 Ribosome 1 0.500231643921109 1 0.999536712157781 hm5C_site_36211 DeepMRMD:1;iRNA_m5C:0.999536712157781 36212 chr17 28772965 28772965 1 + C A STAD 28772959 + 28772939 28772979 41 ATCTGGCTCTGGCTCTTTATCGATACCATTCCTACAAAGAC ATCTGGCTCTGGCTCTTTATCGATACAATTCCTACAAAGAC < 41bp 1 0.592093950520666 1 0.841158986091614 experiment 0.815812098958668 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPD ENSG00000108582 CDS Human protein_coding chr17:28772959 chr17:28772965 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_36599 0 0 1 0 1 Nucleus 1 0.500231643921136 0.317682027816772 0.999536712157727 hm5C_site_36212 DeepMRMD:0.317682027816772;iRNA_m5C:0.999536712157727 36213 chr19 42855624 42855624 1 + G A STAD 42855632 + 42855612 42855652 41 TCTAGCCAGTGCGCCTGGTGCCAGTCCACCCACACCTGCTT TCTAGCCAGTGCACCTGGTGCCAGTCCACCCACACCTGCTT < 41bp 1 0.0752643813059662 1 0.180868595838547 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42855632 chr19:42855624 nonsynonymous SNV 0.994 3 13 hm5C_associated_SNPs_36600 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644142938 1 0.999536711714125 hm5C_site_36213 DeepMRMD:1;iRNA_m5C:0.999536711714125 36214 chr8 145735838 145735838 1 + G A STAD 145735855 + 145735835 145735875 41 GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT GTGATCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT < 41bp 1 0.233141495493219 1 0.0862568318843842 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735855 chr8:145735838 nonsynonymous SNV 0.133 0 4 hm5C_associated_SNPs_36601 0 0 1 0 2 Ribosome 1 0.500231643920985 1 0.99953671215803 hm5C_site_36214 DeepMRMD:1;iRNA_m5C:0.99953671215803 36215 chr8 145735838 145735838 1 + G A STAD 145735858 + 145735838 145735878 41 GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT ATCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT < 41bp 1 0.183313117065154 1 0.190681576728821 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735858 chr8:145735838 nonsynonymous SNV 0.133 0 1 hm5C_associated_SNPs_36602 0 0 1 0 2 Ribosome 1 0.500231643921151 1 0.999536712157699 hm5C_site_36215 DeepMRMD:1;iRNA_m5C:0.999536712157699 36216 chr20 62631096 62631096 1 + C T STAD 62631080 + 62631060 62631100 41 AGCTACAAGTAGCTCGGAACCTTATCATGAAGGGGACGGAG AGCTACAAGTAGCTCGGAACCTTATCATGAAGGGGATGGAG < 41bp 1 0.138715517841435 1 0.0804316401481628 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62631080 chr20:62631096 nonsynonymous SNV 0.995 2 37 hm5C_associated_SNPs_36603 0 0 1 0 1 Cytosol 1 0.500237167415456 1 0.999525665169087 hm5C_site_36216 DeepMRMD:1;iRNA_m5C:0.999525665169087 36217 chr16 56660799 56660799 1 + T C STAD 56660787 + 56660767 56660807 41 CTCTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTG CTCTCACTCTCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTG < 41bp 1 0.440432971162156 1 0.14299863576889 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56660787 chr16:56660799 synonymous SNV . 0 33 hm5C_associated_SNPs_36604 0 0 1 2 1 Ribosome 1 0.500231643921099 1 0.999536712157802 hm5C_site_36217 DeepMRMD:1;iRNA_m5C:0.999536712157802 36218 chr16 56660799 56660799 1 + T C STAD 56660788 + 56660768 56660808 41 TCTCACTCTCCCCTTCTTCCCCAGGCTGCTGTTCCTGCTGC TCTCACTCTCCCCTTCTTCCCCAGGCTGCTGCTCCTGCTGC < 41bp 1 0.661104860714006 1 0.342791974544525 experiment 0.677790278571988 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56660788 chr16:56660799 synonymous SNV . 0 32 hm5C_associated_SNPs_36605 0 0 1 2 1 Ribosome 1 0.500231643921789 1 0.999536712156421 hm5C_site_36218 DeepMRMD:1;iRNA_m5C:0.999536712156421 36219 chr2 204259439 204259439 1 + C T STAD 204259431 + 204259411 204259451 41 TTCTTTTTGTAGGCGGCACTCCCCCTATCGCACACTGGAGC TTCTTTTTGTAGGCGGCACTCCCCCTATTGCACACTGGAGC < 41bp 1 0.294989828198576 1 0.197106510400772 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204259431 chr2:204259439 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_36607 0 0 1 0 0 Cytosol 1 0.500231643918745 1 0.99953671216251 hm5C_site_36219 DeepMRMD:1;iRNA_m5C:0.99953671216251 36220 chr2 204259439 204259439 1 + C T STAD 204259435 + 204259415 204259455 41 TTTTGTAGGCGGCACTCCCCCTATCGCACACTGGAGCCAGT TTTTGTAGGCGGCACTCCCCCTATTGCACACTGGAGCCAGT < 41bp 1 0.330427022542703 1 0.148659914731979 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204259435 chr2:204259439 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_36608 0 0 1 0 0 Cytosol 1 0.500231644814781 1 0.999536710370439 hm5C_site_36220 DeepMRMD:1;iRNA_m5C:0.999536710370439 36221 chr7 6631411 6631411 1 + C T STAD 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACAGTCGGATGAGCT < 41bp 1 0.125456383969473 1 0.108920186758041 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631411 synonymous SNV . 0 31 hm5C_associated_SNPs_36609 0 0 1 0 2 chromatin 1 0.500231643921145 1 0.99953671215771 hm5C_site_36221 DeepMRMD:1;iRNA_m5C:0.99953671215771 36222 chr7 6631411 6631411 1 + C T STAD 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACAGTCGGATGAGCTT < 41bp 1 0.387493202893219 1 0.466235280036926 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631411 synonymous SNV . 0 30 hm5C_associated_SNPs_36610 0 0 1 0 2 chromatin 1 0.500231643739894 1 0.999536712520212 hm5C_site_36222 DeepMRMD:1;iRNA_m5C:0.999536712520212 36223 chr1 153750649 153750649 1 + C T STAD 153750644 + 153750624 153750664 41 CCACTCATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCC CCACTCATCTCAGAGCAAGGCAGAATGTGGCCATAAGGTCC < 41bp 1 0.64805563857801 1 0.375772178173065 experiment 0.70388872284398 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750644 chr1:153750649 nonsynonymous SNV 0.125 0 26 hm5C_associated_SNPs_36611 0 0 0 0 1 nucleoplasm 1 0.500232000702223 1 0.999535998595555 hm5C_site_36223 DeepMRMD:1;iRNA_m5C:0.999535998595555 36224 chr1 153750649 153750649 1 + C T STAD 153750655 + 153750635 153750675 41 AGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTGGCAGTG AGAGCAAGGCAGAATGTGGCCATAAGGTCCGGCTGGCAGTG < 41bp 1 0.53406887726565 1 0.143854230642319 experiment 0.931862245468699 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750655 chr1:153750649 nonsynonymous SNV 0.125 0 15 hm5C_associated_SNPs_36612 0 0 0 0 1 nucleoplasm 1 0.500231645866042 1 0.999536708267916 hm5C_site_36224 DeepMRMD:1;iRNA_m5C:0.999536708267916 36225 chr1 153750649 153750649 1 + C T STAD 153750663 + 153750643 153750683 41 GCAGAACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG GCAGAATGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG < 41bp 1 0.474216422563772 1 0.438252061605453 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750663 chr1:153750649 nonsynonymous SNV 0.125 0 7 hm5C_associated_SNPs_36613 0 0 0 0 1 nucleoplasm 1 0.500231646956381 1 0.999536706087239 hm5C_site_36225 DeepMRMD:1;iRNA_m5C:0.999536706087239 36226 chr1 153750649 153750649 1 + C T STAD 153750667 + 153750647 153750687 41 AACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG AATGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG < 41bp 1 0.422405295036558 1 0.114519029855728 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750667 chr1:153750649 nonsynonymous SNV 0.125 0 3 hm5C_associated_SNPs_36614 0 0 0 0 1 nucleoplasm 1 0.500231643854459 1 0.999536712291082 hm5C_site_36226 DeepMRMD:1;iRNA_m5C:0.999536712291082 36227 chr7 4830445 4830445 1 + C T STAD 4830446 + 4830426 4830466 41 TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCACCGTGC TGCTGCCCTGCCCAGGTGTTCCCCCCAGGTGGTCACCGTGC < 41bp 1 0.107627234741766 1 0.0138234794139862 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4830446 chr7:4830445 nonsynonymous SNV 0.020 0 20 hm5C_associated_SNPs_36615 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36227 DeepMRMD:1;iRNA_m5C:0.999536712157815 36228 chr11 61916008 61916008 1 + G T STAD 61915991 + 61915971 61916011 41 CCCTGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAG CCCTGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTTGAG < 41bp 1 0.229969136579808 1 0.353312313556671 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915991 chr11:61916008 synonymous SNV . 0 38 hm5C_associated_SNPs_36616 0 0 1 0 1 chromatin 1 0.500231653532175 1 0.999536692935649 hm5C_site_36228 DeepMRMD:1;iRNA_m5C:0.999536692935649 36229 chr11 61916008 61916008 1 + G T STAD 61915994 + 61915974 61916014 41 TGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAG TGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTTGAGGAG < 41bp 1 0.630575467098199 1 0.79191392660141 experiment 0.738849065803602 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915994 chr11:61916008 synonymous SNV . 0 35 hm5C_associated_SNPs_36617 0 0 1 0 1 chromatin 1 0.500231645053279 0.41617214679718 0.999536709893443 hm5C_site_36229 DeepMRMD:0.41617214679718;iRNA_m5C:0.999536709893443 36230 chr11 61916008 61916008 1 + G T STAD 61915997 + 61915977 61916017 41 GGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAGAAG GGCTGCAGAAGGAGCAGCTGCAGAGGGAACTTGAGGAGAAG < 41bp 1 0.385332499852599 1 0.521219432353973 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61915997 chr11:61916008 synonymous SNV . 0 32 hm5C_associated_SNPs_36618 0 0 1 0 1 chromatin 1 0.500231643921093 0.957561135292054 0.999536712157814 hm5C_site_36230 DeepMRMD:0.957561135292054;iRNA_m5C:0.999536712157814 36231 chr11 61916008 61916008 1 + G T STAD 61916006 + 61915986 61916026 41 AGGAGCAGCTGCAGAGGGAACTGGAGGAGAAGAAGAAGAAG AGGAGCAGCTGCAGAGGGAACTTGAGGAGAAGAAGAAGAAG < 41bp 1 0.562426667287602 1 0.491275995969772 experiment 0.875146665424796 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61916006 chr11:61916008 synonymous SNV . 0 23 hm5C_associated_SNPs_36619 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36231 DeepMRMD:1;iRNA_m5C:0.999536712157815 36232 chr9 96422642 96422642 1 + C A STAD 96422648 + 96422628 96422668 41 AAACTGTGAAGATGCCCAAGCCATCCAAAATCCCCAAGCCC AAACTGTGAAGATGACCAAGCCATCCAAAATCCCCAAGCCC < 41bp 1 0.0199994625819456 1 0.130670160055161 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96422648 chr9:96422642 nonsynonymous SNV 1.000 0 15 hm5C_associated_SNPs_36620 0 0 0 0 0 chromatin 1 0.500231644069347 1 0.999536711861307 hm5C_site_36232 DeepMRMD:1;iRNA_m5C:0.999536711861307 36233 chr9 96422642 96422642 1 + C A STAD 96422652 + 96422632 96422672 41 TGTGAAGATGCCCAAGCCATCCAAAATCCCCAAGCCCCCGA TGTGAAGATGACCAAGCCATCCAAAATCCCCAAGCCCCCGA < 41bp 1 0.493269494155657 1 0.679374217987061 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96422652 chr9:96422642 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_36621 0 0 0 0 0 chromatin 1 0.500231643921092 0.641251564025878 0.999536712157815 hm5C_site_36233 DeepMRMD:0.641251564025878;iRNA_m5C:0.999536712157815 36234 chr5 140516534 140516534 1 + C T STAD 140516546 + 140516526 140516566 41 TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTC TCCATCAATGCGGACAACGGCCACCTGTTTGCCCTCAGGTC < 41bp 1 0.137547486437932 1 0.0917324125766754 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140516546 chr5:140516534 synonymous SNV . 0 9 hm5C_associated_SNPs_36622 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36234 DeepMRMD:1;iRNA_m5C:0.999536712157815 36235 chr13 92051399 92051399 1 + T C STAD 92051411 + 92051391 92051431 41 GAAGAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC GAAGAAGTCCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC < 41bp 1 0.528162997127387 1 0.777970135211945 experiment 0.943674005745226 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC5 ENSG00000179399 CDS Human protein_coding chr13:92051411 chr13:92051399 synonymous SNV . 0 9 hm5C_associated_SNPs_36623 0 0 0 0 1 Nucleus 1 0.500231643921092 0.44405972957611 0.999536712157815 hm5C_site_36235 DeepMRMD:0.44405972957611;iRNA_m5C:0.999536712157815 36236 chr1 110754481 110754481 1 + C T STAD 110754469 + 110754449 110754489 41 TACCGCACCGGCAAGCTGCACTGCCCCGCGGACGTGTGCGG TACCGCACCGGCAAGCTGCACTGCCCCGCGGATGTGTGCGG < 41bp 1 0.315205447917226 1 0.112513154745102 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110754469 chr1:110754481 synonymous SNV . 0 33 hm5C_associated_SNPs_36624 0 0 0 0 0 Nucleus 1 0.500233261922699 1 0.999533476154602 hm5C_site_36236 DeepMRMD:1;iRNA_m5C:0.999533476154602 36237 chr15 41650447 41650447 1 + T C STAD 41650441 + 41650421 41650461 41 CATTTTGAAGAACACAATTCCATGAATGAACTGAAGGTATG CATTTTGAAGAACACAATTCCATGAACGAACTGAAGGTATG < 41bp 1 0.465764527854641 1 0.162579774856567 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41650441 chr15:41650447 synonymous SNV . 0 27 hm5C_associated_SNPs_36626 0 0 1 0 1 Nucleus 1 0.500231650749853 1 0.999536698500294 hm5C_site_36237 DeepMRMD:1;iRNA_m5C:0.999536698500294 36238 chr7 142561975 142561975 1 + C T STAD 142561972 + 142561952 142561992 41 TACCGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC TACCGTCAGGCTGAGGAGCCCGATAGCCCTGACAGCGTTTC < 41bp 1 0.508976275243788 1 0.189951151609421 experiment 0.982047449512424 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561972 chr7:142561975 synonymous SNV . 0 24 hm5C_associated_SNPs_36627 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_36238 DeepMRMD:1;iRNA_m5C:0.999536712157815 36239 chr9 131559379 131559379 1 + C G STAD 131559385 + 131559365 131559405 41 AGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCA AGGGCCACTGACTAGCCTTGCCTCCTCATCCTGGACCCCCA < 41bp 1 0.0494907716800402 1 0.0606066882610321 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D13 ENSG00000107021 CDS Human protein_coding chr9:131559385 chr9:131559379 stopgain 0.995 1 15 hm5C_associated_SNPs_36628 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36239 DeepMRMD:1;iRNA_m5C:0.999536712157815 36240 chr19 11474845 11474845 1 + G T STAD 11474841 + 11474821 11474861 41 TGTCTCTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATT TGTCTCTTTGTCTCAGGAACCCGATGTCTGCAGGCCGCATT < 41bp 1 0.311191252235678 1 0.705055117607117 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474841 chr19:11474845 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_36629 0 0 1 0 2 exosome 1 0.500231699700864 0.589889764785766 0.999536600598271 hm5C_site_36240 DeepMRMD:0.589889764785766;iRNA_m5C:0.999536600598271 36241 chr14 64690024 64690024 1 + C T STAD 64690010 + 64689990 64690030 41 TGGAGAAGACTGTATTGAAGCTGAAGAAAAGGTGCATGTTA TGGAGAAGACTGTATTGAAGCTGAAGAAAAGGTGTATGTTA < 41bp 1 0.279939482486103 1 0.318186938762665 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64690010 chr14:64690024 nonsynonymous SNV 0.994 4 35 hm5C_associated_SNPs_36630 0 0 1 0 1 Nucleus 1 0.500231638220992 1 0.999536723558015 hm5C_site_36241 DeepMRMD:1;iRNA_m5C:0.999536723558015 36242 chr19 39860748 39860748 1 + G T STAD 39860763 + 39860743 39860783 41 TATTGGGAGCAATGCAAACACAGGTAAGTGGCGGGGGTGTC TATTGTGAGCAATGCAAACACAGGTAAGTGGCGGGGGTGTC < 41bp 1 0.685716643970976 1 0.491427361965179 experiment 0.628566712058049 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39860763 chr19:39860748 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_36631 0 0 1 0 1 Ribosome 1 0.500236914445859 1 0.999526171108281 hm5C_site_36242 DeepMRMD:1;iRNA_m5C:0.999526171108281 36243 chr11 47289880 47289880 1 + G A STAD 47289881 + 47289861 47289901 41 ATATGTGGAAGCCCTGCATGCCTACGTCTCCATCCACCATC ATATGTGGAAGCCCTGCATACCTACGTCTCCATCCACCATC < 41bp 1 0.0938778280830408 1 0.0124123990535736 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47289881 chr11:47289880 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_36632 0 0 1 0 2 Ribosome 1 0.500231643921096 1 0.999536712157809 hm5C_site_36243 DeepMRMD:1;iRNA_m5C:0.999536712157809 36244 chr5 176722004 176722004 1 + G T STAD 176722024 + 176722004 176722044 41 GGCCTTTTTATATGAGCCAACAACTCAGGCCTCAGGAAGAG TGCCTTTTTATATGAGCCAACAACTCAGGCCTCAGGAAGAG < 41bp 1 0.113312151928787 1 0.0503663718700409 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176722024 chr5:176722004 nonsynonymous SNV 0.998 5 1 hm5C_associated_SNPs_36633 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36244 DeepMRMD:1;iRNA_m5C:0.999536712157815 36245 chr17 80882895 80882895 1 + G A STAD 80882898 + 80882878 80882918 41 TCTCGTTGGCCTTGGGCGCCCTTCCAGGCTTCCTTCTGAAA TCTCGTTGGCCTTGGGCACCCTTCCAGGCTTCCTTCTGAAA < 41bp 1 0.144778535463784 1 0.0316500663757324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCD ENSG00000141556 CDS Human protein_coding chr17:80882898 chr17:80882895 nonsynonymous SNV 0.002 0 18 hm5C_associated_SNPs_36635 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_36245 DeepMRMD:1;iRNA_m5C:0.999536712157816 36246 chr6 27833333 27833333 1 + G T STAD 27833344 + 27833324 27833364 41 GGAGCTGGCGGGCAACGCCGCCCGCGACAACAAGAAGACCC GGAGCTGGCTGGCAACGCCGCCCGCGACAACAAGAAGACCC < 41bp 1 0.375557167221412 1 0.38513571023941 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AL ENSG00000198374 CDS Human other chr6:27833344 chr6:27833333 synonymous SNV . 0 10 hm5C_associated_SNPs_36637 0 0 1 0 0 exosome 1 0.500231643921142 1 0.999536712157716 hm5C_site_36246 DeepMRMD:1;iRNA_m5C:0.999536712157716 36247 chr6 27833333 27833333 1 + G T STAD 27833345 + 27833325 27833365 41 GAGCTGGCGGGCAACGCCGCCCGCGACAACAAGAAGACCCG GAGCTGGCTGGCAACGCCGCCCGCGACAACAAGAAGACCCG < 41bp 1 0.361556563402631 1 0.364019513130188 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AL ENSG00000198374 CDS Human other chr6:27833345 chr6:27833333 synonymous SNV . 0 9 hm5C_associated_SNPs_36638 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36247 DeepMRMD:1;iRNA_m5C:0.999536712157815 36248 chr2 179247234 179247234 1 + A C STAD 179247214 + 179247194 179247234 41 TGAAGACAACACCAGTGTTGCAGACAATATTTCTCGGCAAA TGAAGACAACACCAGTGTTGCAGACAATATTTCTCGGCAAC < 41bp 1 0.111278975663151 1 0.22565495967865 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179247214 chr2:179247234 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_36639 0 0 1 0 2 Cytosol 1 0.500231674233335 1 0.99953665153333 hm5C_site_36248 DeepMRMD:1;iRNA_m5C:0.99953665153333 36249 chr7 97833476 97833476 1 + C T STAD 97833471 + 97833451 97833491 41 CCAGCTTTTCCCTCACACACCTGACCGACTCGGACATCGAG CCAGCTTTTCCCTCACACACCTGACTGACTCGGACATCGAG < 41bp 1 0.192860669807955 1 0.0559093952178955 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833471 chr7:97833476 synonymous SNV . 0 26 hm5C_associated_SNPs_36640 0 0 1 0 1 Nucleus 1 0.500231647071165 1 0.99953670585767 hm5C_site_36249 DeepMRMD:1;iRNA_m5C:0.99953670585767 36250 chr11 65402819 65402819 1 + C T STAD 65402799 + 65402779 65402819 41 GAGGGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACAC GAGGGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACAT < 41bp 1 0.267383528744244 1 0.119782090187073 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402799 chr11:65402819 nonsynonymous SNV 0.990 1 41 hm5C_associated_SNPs_36641 0 0 0 0 0 Ribosome 1 0.500231643858009 1 0.999536712283983 hm5C_site_36250 DeepMRMD:1;iRNA_m5C:0.999536712283983 36251 chr11 65402819 65402819 1 + C T STAD 65402802 + 65402782 65402822 41 GGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCC GGTGACCCAGCATGGCGCAGCGCCATCCTCAGCAACATGCC < 41bp 1 0.349318343478993 1 0.414614200592041 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402802 chr11:65402819 nonsynonymous SNV 0.990 1 38 hm5C_associated_SNPs_36642 0 0 0 0 0 Ribosome 1 0.500231516768371 1 0.999536966463259 hm5C_site_36251 DeepMRMD:1;iRNA_m5C:0.999536966463259 36252 chr11 65402819 65402819 1 + C T STAD 65402804 + 65402784 65402824 41 TGACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCCCT TGACCCAGCATGGCGCAGCGCCATCCTCAGCAACATGCCCT < 41bp 1 0.0133005837550244 1 0.0389918684959412 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402804 chr11:65402819 nonsynonymous SNV 0.990 1 36 hm5C_associated_SNPs_36643 0 0 0 0 0 Ribosome 1 0.500232422860303 1 0.999535154279394 hm5C_site_36252 DeepMRMD:1;iRNA_m5C:0.999535154279394 36253 chr11 65402819 65402819 1 + C T STAD 65402805 + 65402785 65402825 41 GACCCAGCATGGCGCAGCGCCATCCTCAGCAACACGCCCTC GACCCAGCATGGCGCAGCGCCATCCTCAGCAACATGCCCTC < 41bp 1 0.0530619016242781 1 0.089886337518692 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402805 chr11:65402819 nonsynonymous SNV 0.990 1 35 hm5C_associated_SNPs_36644 0 0 0 0 0 Ribosome 1 0.500231647018477 1 0.999536705963046 hm5C_site_36253 DeepMRMD:1;iRNA_m5C:0.999536705963046 36254 chr11 65402819 65402819 1 + C T STAD 65402834 + 65402814 65402854 41 CAACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATG CAACATGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATG < 41bp 1 0.115784154421669 1 0.0703338086605072 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402834 chr11:65402819 nonsynonymous SNV 0.990 1 6 hm5C_associated_SNPs_36645 0 0 0 0 0 Ribosome 1 0.50023164383179 1 0.999536712336419 hm5C_site_36254 DeepMRMD:1;iRNA_m5C:0.999536712336419 36255 chr11 65402819 65402819 1 + C T STAD 65402836 + 65402816 65402856 41 ACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGAT ACATGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGAT < 41bp 1 0.137261528665907 1 0.116542816162109 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402836 chr11:65402819 nonsynonymous SNV 0.990 1 4 hm5C_associated_SNPs_36646 0 0 0 0 0 Ribosome 1 0.500231170609856 1 0.999537658780288 hm5C_site_36255 DeepMRMD:1;iRNA_m5C:0.999537658780288 36256 chr11 65402819 65402819 1 + C T STAD 65402839 + 65402819 65402859 41 CGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCC TGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCC < 41bp 1 0.271774368851154 1 0.914640545845032 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402839 chr11:65402819 nonsynonymous SNV 0.990 1 1 hm5C_associated_SNPs_36647 0 0 0 0 0 Ribosome 1 0.500231643923377 0.170718908309936 0.999536712153246 hm5C_site_36256 DeepMRMD:0.170718908309936;iRNA_m5C:0.999536712153246 36257 chr14 45620674 45620674 1 + A G STAD 45620670 + 45620650 45620690 41 AAGGGATATCCCAAATCTAACAAAATATCAGATAATTCTGG AAGGGATATCCCAAATCTAACAAAGTATCAGATAATTCTGG < 41bp 1 0.266479346771632 1 0.378987312316895 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FANCM ENSG00000187790 CDS Human protein_coding chr14:45620670 chr14:45620674 synonymous SNV . 0 25 hm5C_associated_SNPs_36648 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36257 DeepMRMD:1;iRNA_m5C:0.999536712157815 36258 chr2 211465372 211465372 1 + A C STAD 211465360 + 211465340 211465380 41 AGTTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT AGTTGAGTCCATTATGGCTACGGAAGACAGGCCGCTGTTTT < 41bp 1 0.566991015834297 1 0.845588386058807 experiment 0.866017968331407 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPS1 ENSG00000021826 CDS Human protein_coding chr2:211465360 chr2:211465372 nonsynonymous SNV 0.998 3 33 hm5C_associated_SNPs_36649 0 0 1 0 2 Nucleus 1 0.500231643921092 0.308823227882386 0.999536712157815 hm5C_site_36258 DeepMRMD:0.308823227882386;iRNA_m5C:0.999536712157815 36259 chrX 153627879 153627879 1 + A G STAD 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGGGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT < 41bp 1 0.274220392105354 1 0.390862345695496 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627879 nonsynonymous SNV 0.985 1 4 hm5C_associated_SNPs_36650 0 0 1 0 2 Cytosol 1 0.500369028719712 1 0.999261942560576 hm5C_site_36259 DeepMRMD:1;iRNA_m5C:0.999261942560576 36260 chr13 93879765 93879765 1 + T C STAD 93879771 + 93879751 93879791 41 GCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTC GCTGCTGCTCTCCCCCCCCGCCGGGGCGGATGTGAAGGCTC < 41bp 1 0.603402773587643 1 0.85332727432251 experiment 0.793194452824713 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:93879771 chr13:93879765 nonsynonymous SNV 0.996 2 15 hm5C_associated_SNPs_36651 0 0 1 0 0 Ribosome 1 0.50023164391603 0.29334545135498 0.999536712167941 hm5C_site_36260 DeepMRMD:0.29334545135498;iRNA_m5C:0.999536712167941 36261 chr10 17275857 17275857 1 + G A STAD 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACGGCTGCCCTGCATGACGTACGTCAGCAATAT < 41bp 1 0.350498423124269 1 0.0388129055500031 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275857 nonsynonymous SNV 0.814 3 22 hm5C_associated_SNPs_36653 0 0 1 1 2 Ribosome 1 0.500231643921072 1 0.999536712157855 hm5C_site_36261 DeepMRMD:1;iRNA_m5C:0.999536712157855 36262 chr10 17275857 17275857 1 + G A STAD 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACGGCTGCCCTGCATGACGTACGTCAGCAATATGAAAG < 41bp 1 0.134036298459383 1 0.0206911563873291 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275857 nonsynonymous SNV 0.814 3 17 hm5C_associated_SNPs_36654 0 0 1 1 2 Ribosome 1 0.500231637767018 1 0.999536724465964 hm5C_site_36262 DeepMRMD:1;iRNA_m5C:0.999536724465964 36263 chr15 75644698 75644698 1 + G A STAD 75644692 + 75644672 75644712 41 ATCCCCCCCTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT ATCCCCCCCTTTGAGAAGGCCCGCTCAGTCCTGGAGGCCCT < 41bp 1 0.136117740877959 1 0.0340611934661865 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75644692 chr15:75644698 synonymous SNV . 0 27 hm5C_associated_SNPs_36655 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36263 DeepMRMD:1;iRNA_m5C:0.999536712157815 36264 chr3 40503441 40503441 1 + A G STAD 40503435 + 40503415 40503455 41 ATTGATAATTTTCAGAGGAACAGAATAATCAAGAATGAAGT ATTGATAATTTTCAGAGGAACAGAATGATCAAGAATGAAGT < 41bp 1 0.56318716955211 1 0.217792958021164 experiment 0.87362566089578 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40503435 chr3:40503441 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_36656 0 0 1 0 1 Ribosome 1 0.500231643909033 1 0.999536712181933 hm5C_site_36264 DeepMRMD:1;iRNA_m5C:0.999536712181933 36265 chr17 54939226 54939226 1 + C T STAD 54939235 + 54939215 54939255 41 GGATACTGGGGCGGTGGCTGCAGACTATGGGAAGGGATGGG GGATACTGGGGTGGTGGCTGCAGACTATGGGAAGGGATGGG < 41bp 1 0.413928132916666 1 0.686980009078979 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54939235 chr17:54939226 synonymous SNV . 0 12 hm5C_associated_SNPs_36657 0 0 0 0 2 Ribosome 1 0.500231643921054 0.626039981842042 0.999536712157891 hm5C_site_36265 DeepMRMD:0.626039981842042;iRNA_m5C:0.999536712157891 36266 chr9 135919198 135919198 1 + C T STAD 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTCTGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC < 41bp 1 0.0473291825903677 1 0.0222498178482056 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919198 nonsynonymous SNV 0.355 4 4 hm5C_associated_SNPs_36658 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36266 DeepMRMD:1;iRNA_m5C:0.999536712157815 36267 chr17 40766006 40766006 1 + C T STAD 40765994 + 40765974 40766014 41 CTTCCTCATGACCGGCTACACCCCTCTCACTACGGACCAGT CTTCCTCATGACCGGCTACACCCCTCTCACTATGGACCAGT < 41bp 1 0.198056170796745 1 0.0560669302940369 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765994 chr17:40766006 nonsynonymous SNV 0.995 2 33 hm5C_associated_SNPs_36659 0 0 1 0 1 Ribosome 1 0.500231674773582 1 0.999536650452835 hm5C_site_36267 DeepMRMD:1;iRNA_m5C:0.999536650452835 36268 chr12 53412624 53412624 1 + C T STAD 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGACGATGTGTATAGGGTGCCTCCAATTGACCGTTCCATC < 41bp 1 0.0487802888534532 1 0.0350538492202759 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412624 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_36661 0 0 1 0 1 Cytosol 1 0.500231024735798 1 0.999537950528405 hm5C_site_36268 DeepMRMD:1;iRNA_m5C:0.999537950528405 36269 chr6 52269023 52269023 1 + G A STAD 52269024 + 52269004 52269044 41 TGCCTGCAGTGCTGCCACCGCAGCCCTTCTGAGGCACAAAG TGCCTGCAGTGCTGCCACCACAGCCCTTCTGAGGCACAAAG < 41bp 1 0.346471326117084 1 0.339354068040848 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAQR8 ENSG00000170915 CDS Human protein_coding chr6:52269024 chr6:52269023 nonsynonymous SNV 0.003 4 20 hm5C_associated_SNPs_36662 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36269 DeepMRMD:1;iRNA_m5C:0.999536712157815 36270 chr5 17275368 17275368 1 + A T STAD 17275370 + 17275350 17275390 41 AAGAAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAA AAGAAGGGCTACAATGTGTACGACGAGAAAGCCAAGGAGAA < 41bp 1 0.530894272975362 1 0.257725894451141 experiment 0.938211454049276 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275370 chr5:17275368 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_36663 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36270 DeepMRMD:1;iRNA_m5C:0.999536712157815 36271 chr5 17275368 17275368 1 + A T STAD 17275381 + 17275361 17275401 41 CAATGTGAACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG CAATGTGTACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG < 41bp 1 0.389288501123678 1 0.482883363962173 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275381 chr5:17275368 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_36665 0 0 1 0 1 Nucleus 1 0.500231632611626 1 0.999536734776749 hm5C_site_36271 DeepMRMD:1;iRNA_m5C:0.999536734776749 36272 chr1 109801247 109801247 1 + C T STAD 109801267 + 109801247 109801287 41 CGTACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCA TGTACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCA < 41bp 1 0.0697108577929913 1 0.102274537086487 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801267 chr1:109801247 synonymous SNV . 0 1 hm5C_associated_SNPs_36666 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643924492 1 0.999536712151015 hm5C_site_36272 DeepMRMD:1;iRNA_m5C:0.999536712151015 36273 chr7 73922447 73922447 1 + A G STAD 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGCGCTGTGACGTCCCCACCGACGGCTGCGGACC < 41bp 1 0.606933431217317 1 0.227782070636749 experiment 0.786133137565367 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922447 nonsynonymous SNV 0.991 1 28 hm5C_associated_SNPs_36667 0 0 1 0 2 Nucleus 1 0.500231360295251 1 0.999537279409498 hm5C_site_36273 DeepMRMD:1;iRNA_m5C:0.999537279409498 36274 chr9 20923662 20923662 1 + G A STAD 20923667 + 20923647 20923687 41 CCTTTTGAACAGGGAGAGTCCGGTAGTGAAAGGCAATGCGC CCTTTTGAACAGGGAAAGTCCGGTAGTGAAAGGCAATGCGC < 41bp 1 0.544126159218995 1 0.217327535152435 experiment 0.91174768156201 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20923667 chr9:20923662 synonymous SNV . 0 16 hm5C_associated_SNPs_36668 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36274 DeepMRMD:1;iRNA_m5C:0.999536712157815 36275 chr12 56335359 56335359 1 + C T STAD 56335343 + 56335323 56335363 41 ACCCTCGACAGGTGTTCAACCTCCTAAAGGATGGTCCTGAG ACCCTCGACAGGTGTTCAACCTCCTAAAGGATGGTCTTGAG < 41bp 1 0.642622796224826 1 0.553250312805176 experiment 0.714754407550348 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DGKA ENSG00000065357 CDS Human protein_coding chr12:56335343 chr12:56335359 nonsynonymous SNV 0.997 4 37 hm5C_associated_SNPs_36669 0 0 0 0 0 Cytosol 1 0.500231643649243 0.893499374389648 0.999536712701514 hm5C_site_36275 DeepMRMD:0.893499374389648;iRNA_m5C:0.999536712701514 36276 chr2 172950706 172950706 1 + C G STAD 172950693 + 172950673 172950713 41 TACCCGGGCAGCGCCAGCCTCGCCCAGAGCCGCCTGGAGGA TACCCGGGCAGCGCCAGCCTCGCCCAGAGCCGCGTGGAGGA < 41bp 1 0.554187879675336 1 0.476779729127884 experiment 0.891624240649328 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DLX1 ENSG00000144355 CDS Human protein_coding chr2:172950693 chr2:172950706 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_36670 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_36276 DeepMRMD:1;iRNA_m5C:0.999536712157814 36277 chr19 34302362 34302362 1 + G A STAD 34302343 + 34302323 34302363 41 AAGGCCCTCATCGAGGAGGTCTTCCCCGAGACCGGAGACGT AAGGCCCTCATCGAGGAGGTCTTCCCCGAGACCGGAGACAT < 41bp 1 0.106459613830198 1 0.0284124612808228 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34302343 chr19:34302362 nonsynonymous SNV 0.992 1 40 hm5C_associated_SNPs_36671 0 0 1 0 1 Cytosol 1 0.500231643921095 1 0.999536712157809 hm5C_site_36277 DeepMRMD:1;iRNA_m5C:0.999536712157809 36278 chr8 104432650 104432650 1 + G C STAD 104432667 + 104432647 104432687 41 CCAGAGAAGCTGGCTACTGTCCTTTCTGGGGCGTGTGATGG CCACAGAAGCTGGCTACTGTCCTTTCTGGGGCGTGTGATGG < 41bp 1 0.0996992870317609 1 0.0579287111759186 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104432667 chr8:104432650 nonsynonymous SNV 0.996 1 4 hm5C_associated_SNPs_36672 0 0 1 0 0 Nucleus 1 0.500231643921231 1 0.999536712157538 hm5C_site_36278 DeepMRMD:1;iRNA_m5C:0.999536712157538 36279 chr14 56233336 56233336 1 + G T STAD 56233356 + 56233336 56233376 41 GTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGA TTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGA < 41bp 1 0.441234836630102 1 0.146556943655014 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233356 chr14:56233336 . . 0 1 hm5C_associated_SNPs_36673 0 0 0 0 0 unknown 1 0.500231643921029 1 0.999536712157942 hm5C_site_36279 DeepMRMD:1;iRNA_m5C:0.999536712157942 36280 chr5 10411480 10411480 1 + A T STAD 10411473 + 10411453 10411493 41 ATTCTTATTTATTGGGAGACCAGGAAGAAAATGAAAACAGT ATTCTTATTTATTGGGAGACCAGGAAGTAAATGAAAACAGT < 41bp 1 0.610842285006508 1 0.746097505092621 experiment 0.778315429986984 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10411473 chr5:10411480 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_36674 0 0 1 0 1 Nucleus 1 0.500231643426456 0.507804989814758 0.999536713147088 hm5C_site_36280 DeepMRMD:0.507804989814758;iRNA_m5C:0.999536713147088 36281 chr6 4935819 4935819 1 + G C STAD 4935806 + 4935786 4935826 41 GACAACCAACATACAGACATCTGTTACAGGAGTGACTGCCA GACAACCAACATACAGACATCTGTTACAGGAGTCACTGCCA < 41bp 1 0.167845055446609 1 0.0683037638664246 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4935806 chr6:4935819 synonymous SNV . 0 34 hm5C_associated_SNPs_36675 0 0 1 0 1 Cytoplasm 1 0.500189973197798 1 0.999620053604404 hm5C_site_36281 DeepMRMD:1;iRNA_m5C:0.999620053604404 36282 chr2 113243554 113243554 1 + G A STAD 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCACAAAG < 41bp 1 0.233849102905228 1 0.263939380645752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243554 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_36677 0 0 1 0 2 Cytosol 1 0.500231644231244 1 0.999536711537512 hm5C_site_36282 DeepMRMD:1;iRNA_m5C:0.999536711537512 36283 chr17 79671731 79671731 1 + T A STAD 79671721 + 79671701 79671741 41 GGGTGGTGTGATGTCTGGGGCTGTCCCTGCTGCAGCAGCCC GGGTGGTGTGATGTCTGGGGCTGTCCCTGCAGCAGCAGCCC < 41bp 1 0.134547218820016 1 0.0547695755958557 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671721 chr17:79671731 synonymous SNV . 0 31 hm5C_associated_SNPs_36678 0 0 1 0 2 Ribosome 1 0.500231643921098 1 0.999536712157805 hm5C_site_36283 DeepMRMD:1;iRNA_m5C:0.999536712157805 36284 chr7 45662269 45662269 1 + C T STAD 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTCACGGGCTTGGTATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.437669760993086 1 0.746009945869446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662269 nonsynonymous SNV 0.925 5 16 hm5C_associated_SNPs_36679 0 0 1 0 2 Nucleus 1 0.500231649653654 0.507980108261108 0.999536700692692 hm5C_site_36284 DeepMRMD:0.507980108261108;iRNA_m5C:0.999536700692692 36285 chr5 178987036 178987036 1 + C T STAD 178987020 + 178987000 178987040 41 AAGCTATCCCTGCTCCTGCCCCACAGCTTCTAAGTGCCAGA AAGCTATCCCTGCTCCTGCCCCACAGCTTCTAAGTGTCAGA < 41bp 1 0.319738094528937 1 0.0638091862201691 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178987020 chr5:178987036 synonymous SNV . 0 37 hm5C_associated_SNPs_36680 0 0 1 0 1 Ribosome 1 0.500232342052241 1 0.999535315895518 hm5C_site_36285 DeepMRMD:1;iRNA_m5C:0.999535315895518 36286 chr12 53428437 53428437 1 + G A STAD 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACGGGAACAGTCGAGGACAGGAAGTGAG < 41bp 1 0.205370593109842 1 0.39372307062149 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428437 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_36681 0 0 1 0 2 Cytosol 1 0.500231336403584 1 0.999537327192831 hm5C_site_36286 DeepMRMD:1;iRNA_m5C:0.999537327192831 36287 chr2 11053250 11053250 1 + T C STAD 11053264 + 11053244 11053284 41 GCTGGTTCACCCTGGAGTACCTGCTGCGCCTCTTCTCGTCA GCTGGTCCACCCTGGAGTACCTGCTGCGCCTCTTCTCGTCA < 41bp 1 0.592825129685906 1 0.0897076725959778 experiment 0.814349740628189 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11053264 chr2:11053250 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_36682 0 0 0 0 0 exosome 1 0.500231636128546 1 0.999536727742907 hm5C_site_36287 DeepMRMD:1;iRNA_m5C:0.999536727742907 36288 chr17 38450699 38450699 1 + T C STAD 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTAGAGAAAAATGTAAGCCACAGCTGTTGAACCTCCCACCT < 41bp 1 0.549150311887523 1 0.273159265518188 experiment 0.901699376224953 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450699 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_36683 0 0 1 0 2 Nucleus 1 0.500231644570118 1 0.999536710859763 hm5C_site_36288 DeepMRMD:1;iRNA_m5C:0.999536710859763 36289 chr18 77474877 77474877 1 + G A STAD 77474860 + 77474840 77474880 41 CAGCAGTGAGTCCGAGGGCACGAAGTCCTCCTCCTCCGCCT CAGCAGTGAGTCCGAGGGCACGAAGTCCTCCTCCTCCACCT < 41bp 1 0.590796440076735 1 0.207677125930786 experiment 0.81840711984653 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77474860 chr18:77474877 nonsynonymous SNV 0.000 0 38 hm5C_associated_SNPs_36685 0 0 1 0 0 chromatin 1 0.500231344980057 1 0.999537310039885 hm5C_site_36289 DeepMRMD:1;iRNA_m5C:0.999537310039885 36290 chr18 77474877 77474877 1 + G A STAD 77474881 + 77474861 77474901 41 GAAGTCCTCCTCCTCCGCCTCTGATGGCGAAAGCGAGGGGA GAAGTCCTCCTCCTCCACCTCTGATGGCGAAAGCGAGGGGA < 41bp 1 0.431954461505575 1 0.435643136501312 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77474881 chr18:77474877 nonsynonymous SNV 0.000 0 17 hm5C_associated_SNPs_36686 0 0 1 0 0 chromatin 1 0.500231643921095 1 0.999536712157809 hm5C_site_36290 DeepMRMD:1;iRNA_m5C:0.999536712157809 36291 chr2 233128133 233128133 1 + G A STAD 233128132 + 233128112 233128152 41 CAGCAGCGCTTTGTGGACGGCGCACTTCGTTTGGATCAGGT CAGCAGCGCTTTGTGGACGGCACACTTCGTTTGGATCAGGT < 41bp 1 0.112527852373767 1 0.179320394992828 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DIS3L2 ENSG00000144535 CDS Human protein_coding chr2:233128132 chr2:233128133 nonsynonymous SNV 0.703 4 22 hm5C_associated_SNPs_36687 0 0 0 0 1 chromatin 1 0.500231643922563 1 0.999536712154874 hm5C_site_36291 DeepMRMD:1;iRNA_m5C:0.999536712154874 36292 chr9 35736398 35736398 1 + G A STAD 35736415 + 35736395 35736435 41 CCCGCCAGCTTCGTGCCCTCCCCAGTGAGGACCCTTACCAG CCCACCAGCTTCGTGCCCTCCCCAGTGAGGACCCTTACCAG < 41bp 1 0.526170526966327 1 0.35729655623436 experiment 0.947658946067346 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35736415 chr9:35736398 nonsynonymous SNV 0.992 3 4 hm5C_associated_SNPs_36688 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36292 DeepMRMD:1;iRNA_m5C:0.999536712157815 36293 chr15 42105237 42105237 1 + T A STAD 42105224 + 42105204 42105244 41 GGAAAAAAGGCGGACAGTACCTTCTGCATCACGTCCTCAGG GGAAAAAAGGCGGACAGTACCTTCTGCATCACGACCTCAGG < 41bp 1 0.25755860327924 1 0.0657824575901031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42105224 chr15:42105237 nonsynonymous SNV 0.898 2 34 hm5C_associated_SNPs_36689 0 0 1 0 0 Endoplasmic reticulum 1 0.500231607086665 1 0.99953678582667 hm5C_site_36293 DeepMRMD:1;iRNA_m5C:0.99953678582667 36294 chr7 73636001 73636001 1 + C T STAD 73636013 + 73635993 73636033 41 ACTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG ACTGGGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAG < 41bp 1 0.141221407326825 1 0.202085256576538 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636013 chr7:73636001 nonsynonymous SNV 0.028 0 9 hm5C_associated_SNPs_36690 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36294 DeepMRMD:1;iRNA_m5C:0.999536712157815 36295 chr7 73636001 73636001 1 + C T STAD 73636014 + 73635994 73636034 41 CTGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG CTGGGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGG < 41bp 1 0.502011129620644 1 0.31222477555275 experiment 0.995977740758712 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636014 chr7:73636001 nonsynonymous SNV 0.028 0 8 hm5C_associated_SNPs_36691 0 0 1 0 2 chromatin 1 0.500231819331424 1 0.999536361337152 hm5C_site_36295 DeepMRMD:1;iRNA_m5C:0.999536361337152 36296 chr7 73636001 73636001 1 + C T STAD 73636015 + 73635995 73636035 41 TGGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA TGGGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGA < 41bp 1 0.218000826146943 1 0.301795840263367 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636015 chr7:73636001 nonsynonymous SNV 0.028 0 7 hm5C_associated_SNPs_36692 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36296 DeepMRMD:1;iRNA_m5C:0.999536712157815 36297 chr7 73636001 73636001 1 + C T STAD 73636016 + 73635996 73636036 41 GGGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC GGGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGAC < 41bp 1 0.509186709011271 1 0.467643439769745 experiment 0.981626581977458 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636016 chr7:73636001 nonsynonymous SNV 0.028 0 6 hm5C_associated_SNPs_36693 0 0 1 0 2 chromatin 1 0.500231997697791 1 0.999536004604417 hm5C_site_36297 DeepMRMD:1;iRNA_m5C:0.999536004604417 36298 chr7 73636001 73636001 1 + C T STAD 73636017 + 73635997 73636037 41 GGGGCGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA GGGGTGGTTCTCGAAGCCCCCAGAAGGTGAGGCGAAGGACA < 41bp 1 0.635198083731814 1 0.877565503120422 experiment 0.729603832536372 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636017 chr7:73636001 nonsynonymous SNV 0.028 0 5 hm5C_associated_SNPs_36694 0 0 1 0 2 chromatin 1 0.500231643921092 0.244868993759156 0.999536712157815 hm5C_site_36298 DeepMRMD:0.244868993759156;iRNA_m5C:0.999536712157815 36299 chr6 31713064 31713064 1 + C T STAD 31713049 + 31713029 31713069 41 TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGCCAGTG TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGTCAGTG < 41bp 1 0.339088730112347 1 0.407576620578766 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31713049 chr6:31713064 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_36695 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36299 DeepMRMD:1;iRNA_m5C:0.999536712157815 36300 chr2 32958941 32958941 1 + G A STAD 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTGTATTGGAACACCTGAAGATTTTCTATTGCTGT < 41bp 1 0.610138929058942 1 0.490734308958054 experiment 0.779722141882117 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958941 nonsynonymous SNV 0.995 4 19 hm5C_associated_SNPs_36696 0 0 1 0 2 Nucleus 1 0.500230701506481 1 0.999538596987037 hm5C_site_36300 DeepMRMD:1;iRNA_m5C:0.999538596987037 36301 chr22 20128442 20128442 1 + G A STAD 20128461 + 20128441 20128481 41 CGCCTTTCCTTAGGCCTGAACTCCTGGACCGAGCTGCACCG CACCTTTCCTTAGGCCTGAACTCCTGGACCGAGCTGCACCG < 41bp 1 0.338128153302846 1 0.761453866958618 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20128461 chr22:20128442 synonymous SNV . 0 2 hm5C_associated_SNPs_36697 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 0.477092266082764 0.999536712157813 hm5C_site_36301 DeepMRMD:0.477092266082764;iRNA_m5C:0.999536712157813 36302 chr6 142758632 142758632 1 + G A STAD 142758630 + 142758610 142758650 41 ATGTTCAGAAACAGTGGCGGCAGCATCTCTGCTGTGGTAGA ATGTTCAGAAACAGTGGCGGCAACATCTCTGCTGTGGTAGA < 41bp 1 0.298930727539019 1 0.253793001174927 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142758630 chr6:142758632 synonymous SNV . 0 23 hm5C_associated_SNPs_36698 0 0 1 0 2 Ribosome 1 0.500231641421703 1 0.999536717156593 hm5C_site_36302 DeepMRMD:1;iRNA_m5C:0.999536717156593 36303 chr19 13010517 13010517 1 + T G STAD 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCGGTCAGATGTGTTCCTTAAAAAGA < 41bp 1 0.355597148022588 1 0.355500847101212 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010517 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_36699 0 0 1 1 1 Ribosome 1 0.5002316383889 1 0.999536723222199 hm5C_site_36303 DeepMRMD:1;iRNA_m5C:0.999536723222199 36304 chr1 229783427 229783427 1 + G T STAD 229783428 + 229783408 229783448 41 TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTC TCCCTTTGGACCATCTGAATCCGCTGGAGTATGGAAGCGTC < 41bp 1 0.381265123141236 1 0.47354257106781 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control URB2 ENSG00000135763 CDS Human protein_coding chr1:229783428 chr1:229783427 nonsynonymous SNV 0.243 0 20 hm5C_associated_SNPs_36700 0 0 1 0 1 Nucleus 1 0.500231643920979 1 0.999536712158041 hm5C_site_36304 DeepMRMD:1;iRNA_m5C:0.999536712158041 36305 chr2 182786932 182786932 1 + G A STAD 182786940 + 182786920 182786960 41 GGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCTCTG GGTGGCTCTAACACCAACAGCTCCTTCTAGAACAGGCTCTG < 41bp 1 0.428787392646857 1 0.169103711843491 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182786940 chr2:182786932 synonymous SNV . 0 13 hm5C_associated_SNPs_36701 0 0 1 0 0 Ribosome 1 0.50021207112806 1 0.999575857743881 hm5C_site_36305 DeepMRMD:1;iRNA_m5C:0.999575857743881 36306 chr15 69728955 69728955 1 + C T STAD 69728947 + 69728927 69728967 41 TGCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGAT TGCAGAGTTTTCCACCTTTGCCATCATGTGAAATTTTGGAT < 41bp 1 0.0601188435436476 1 0.334998786449432 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69728947 chr15:69728955 synonymous SNV . 0 29 hm5C_associated_SNPs_36702 0 0 1 0 1 Nucleus 1 0.500231643920775 1 0.999536712158451 hm5C_site_36306 DeepMRMD:1;iRNA_m5C:0.999536712158451 36307 chr15 69728955 69728955 1 + C T STAD 69728948 + 69728928 69728968 41 GCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGATA GCAGAGTTTTCCACCTTTGCCATCATGTGAAATTTTGGATA < 41bp 1 0.581300220695014 1 0.118599593639374 experiment 0.837399558609972 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69728948 chr15:69728955 synonymous SNV . 0 28 hm5C_associated_SNPs_36703 0 0 1 0 1 Nucleus 1 0.500231689237421 1 0.999536621525158 hm5C_site_36307 DeepMRMD:1;iRNA_m5C:0.999536621525158 36308 chr1 109811556 109811556 1 + G A STAD 109811544 + 109811524 109811564 41 CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGG CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCACTACGAGG < 41bp 1 0.0465874024391999 1 0.0904102325439453 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811544 chr1:109811556 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_36704 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36308 DeepMRMD:1;iRNA_m5C:0.999536712157815 36309 chr1 109811556 109811556 1 + G A STAD 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCCCACTACGAGGCCCTGCGT < 41bp 1 0.32696877835384 1 0.0983926057815552 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811556 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_36705 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36309 DeepMRMD:1;iRNA_m5C:0.999536712157815 36310 chr1 109811556 109811556 1 + G A STAD 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCCCACTACGAGGCCCTGCGTG < 41bp 1 0.110597602597988 1 0.21556481719017 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811556 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_36706 0 0 1 0 2 Endoplasmic reticulum 1 0.500231648460498 1 0.999536703079004 hm5C_site_36310 DeepMRMD:1;iRNA_m5C:0.999536703079004 36311 chr1 109811556 109811556 1 + G A STAD 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCCCACTACGAGGCCCTGCGTGG < 41bp 1 0.0862036598867546 1 0.161139398813248 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811556 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_36707 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36311 DeepMRMD:1;iRNA_m5C:0.999536712157815 36312 chr1 109811556 109811556 1 + G A STAD 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCCCACTACGAGGCCCTGCGTGGG < 41bp 1 0.280315225387823 1 0.258492648601532 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811556 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_36708 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644107974 1 0.999536711784052 hm5C_site_36312 DeepMRMD:1;iRNA_m5C:0.999536711784052 36313 chr2 160050772 160050772 1 + G A STAD 160050773 + 160050753 160050793 41 GGCCTTGTCCAACAGGTGAGCCGTCTCCTGATTTTGGGAGG GGCCTTGTCCAACAGGTGAACCGTCTCCTGATTTTGGGAGG < 41bp 1 0.0483479807842481 1 0.21909436583519 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TANC1 ENSG00000115183 CDS Human protein_coding chr2:160050773 chr2:160050772 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_36709 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36313 DeepMRMD:1;iRNA_m5C:0.999536712157815 36314 chr7 43580834 43580834 1 + G T STAD 43580837 + 43580817 43580857 41 GACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAG GACGCTTTCTTCACGAGTCCCTTCTACAAGGCACTCCTGAG < 41bp 1 0.0500258487707167 1 0.0841856002807617 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43580837 chr7:43580834 nonsynonymous SNV 0.996 4 18 hm5C_associated_SNPs_36710 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36314 DeepMRMD:1;iRNA_m5C:0.999536712157815 36315 chrX 114877715 114877715 1 + A G STAD 114877725 + 114877705 114877745 41 TGATGTTGTCAGTGGAAACCCCAAACTCAACTTAGCTTTCG TGATGTTGTCGGTGGAAACCCCAAACTCAACTTAGCTTTCG < 41bp 1 0.444412266989058 1 0.27906322479248 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114877725 chrX:114877715 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_36711 0 0 1 1 0 Nucleus 1 0.500231644175846 1 0.999536711648308 hm5C_site_36315 DeepMRMD:1;iRNA_m5C:0.999536711648308 36316 chr6 27806762 27806762 1 + C T STAD 27806746 + 27806726 27806766 41 AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGCCAAG AGACGGCCGTGCGCCTGCTGCTGCCAGGGGAGCTGGTCAAG < 41bp 1 0.596521217397306 1 0.329190909862518 experiment 0.806957565205388 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806746 chr6:27806762 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_36712 0 0 1 0 2 Ribosome 1 0.500231645918132 1 0.999536708163736 hm5C_site_36316 DeepMRMD:1;iRNA_m5C:0.999536708163736 36317 chr11 120317151 120317151 1 + G A STAD 120317136 + 120317116 120317156 41 GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCCACT GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCACCACT < 41bp 1 0.361172248592658 1 0.423886328935623 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120317136 chr11:120317151 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_36713 0 0 1 0 2 Cytosol 1 0.500231747253978 1 0.999536505492043 hm5C_site_36317 DeepMRMD:1;iRNA_m5C:0.999536505492043 36318 chr5 139060723 139060723 1 + G A STAD 139060711 + 139060691 139060731 41 GCTGTGGCAGGTGCCGAAGCCCTCAATGGCCAGTCCGACTT GCTGTGGCAGGTGCCGAAGCCCTCAATGGCCAATCCGACTT < 41bp 1 0.511495268976177 1 0.21088382601738 experiment 0.977009462047646 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXXC5 ENSG00000171604 CDS Human protein_coding chr5:139060711 chr5:139060723 synonymous SNV . 0 33 hm5C_associated_SNPs_36714 0 0 1 0 0 Ribosome 1 0.500231548134307 1 0.999536903731385 hm5C_site_36318 DeepMRMD:1;iRNA_m5C:0.999536903731385 36319 chr20 62703233 62703233 1 + G A STAD 62703231 + 62703211 62703251 41 CCCTGTTCACAGGTGCAGACCCGCAGCTCTGATGAGCCCAT CCCTGTTCACAGGTGCAGACCCACAGCTCTGATGAGCCCAT < 41bp 1 0.229931601980262 1 0.0482207834720612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TCEA2 ENSG00000171703 CDS Human protein_coding chr20:62703231 chr20:62703233 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_36715 0 0 0 0 2 Cytosol 1 0.500230573782478 1 0.999538852435045 hm5C_site_36319 DeepMRMD:1;iRNA_m5C:0.999538852435045 36320 chr7 100275127 100275127 1 + G A STAD 100275144 + 100275124 100275164 41 CACGCCATCCCGCTGCGCTCCTCCTGGGTAATGACCTGTGC CACACCATCCCGCTGCGCTCCTCCTGGGTAATGACCTGTGC < 41bp 1 0.583411213376227 1 0.712117075920105 experiment 0.833177573247547 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275144 chr7:100275127 nonsynonymous SNV 0.856 3 4 hm5C_associated_SNPs_36716 0 0 1 0 1 Cytosol 1 0.500231643950215 0.57576584815979 0.99953671209957 hm5C_site_36320 DeepMRMD:0.57576584815979;iRNA_m5C:0.99953671209957 36321 chr14 52169261 52169261 1 + T A STAD 52169280 + 52169260 52169300 41 ATCCACTTCCGTGTGCAGTACTATGTGGAAAATGGCAGATT AACCACTTCCGTGTGCAGTACTATGTGGAAAATGGCAGATT < 41bp 1 0.200904759356209 1 0.140077352523804 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52169280 chr14:52169261 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_36717 0 0 0 0 1 nucleus 1 0.500231643921105 1 0.99953671215779 hm5C_site_36321 DeepMRMD:1;iRNA_m5C:0.99953671215779 36322 chr1 79128420 79128420 1 + C A STAD 79128401 + 79128381 79128421 41 TATTGCAGCTAGAGGAAGTCCAAAGAAAACTTGGATTTGCT TATTGCAGCTAGAGGAAGTCCAAAGAAAACTTGGATTTGAT < 41bp 1 0.372395949843265 1 0.403286129236221 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IFI44 ENSG00000137965 CDS Human protein_coding chr1:79128401 chr1:79128420 nonsynonymous SNV 0.199 1 40 hm5C_associated_SNPs_36719 0 0 0 0 1 exosome 1 0.500246748915546 1 0.999506502168908 hm5C_site_36322 DeepMRMD:1;iRNA_m5C:0.999506502168908 36323 chr10 17276765 17276765 1 + A G STAD 17276757 + 17276737 17276777 41 CGCCAGGCAAAGCAGGAGTCCACTGAGTACCGGAGACAGGT CGCCAGGCAAAGCAGGAGTCCACTGAGTGCCGGAGACAGGT < 41bp 1 0.292400719605124 1 0.0801100730895996 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276757 chr10:17276765 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_36720 0 0 1 0 2 Ribosome 1 0.500231643921036 1 0.999536712157928 hm5C_site_36323 DeepMRMD:1;iRNA_m5C:0.999536712157928 36324 chr16 722950 722950 1 + C T STAD 722951 + 722931 722971 41 CATTACATGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC CATTACATGGACGGGCAGATCCCCTGCCTCTTTGTCTCCTC < 41bp 1 0.442403959531445 1 0.0970345139503479 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722951 chr16:722950 nonsynonymous SNV 0.990 0 20 hm5C_associated_SNPs_36721 0 0 1 0 1 Ribosome 1 0.500231643901071 1 0.999536712197858 hm5C_site_36324 DeepMRMD:1;iRNA_m5C:0.999536712197858 36325 chr1 36028847 36028847 1 + C A STAD 36028846 + 36028826 36028866 41 ACCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAG ACCTGACCGTTGAAGATGGGCACCGGGAGATCCTGATCAAG < 41bp 1 0.523371912052041 1 0.11153507232666 experiment 0.953256175895918 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028846 chr1:36028847 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_36722 0 0 1 0 1 Endoplasmic reticulum 1 0.500231965477113 1 0.999536069045773 hm5C_site_36325 DeepMRMD:1;iRNA_m5C:0.999536069045773 36326 chr1 36028847 36028847 1 + C A STAD 36028848 + 36028828 36028868 41 CTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGGA CTGACCGTTGAAGATGGGCACCGGGAGATCCTGATCAAGGA < 41bp 1 0.452969873894851 1 0.433260321617126 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028848 chr1:36028847 nonsynonymous SNV 0.997 4 20 hm5C_associated_SNPs_36723 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645594984 1 0.999536708810033 hm5C_site_36326 DeepMRMD:1;iRNA_m5C:0.999536708810033 36327 chr1 36755130 36755130 1 + C T STAD 36755116 + 36755096 36755136 41 GGAGTCTTTCCCAGAGAGATCCAAAAAGGAAGATCGGGGCA GGAGTCTTTCCCAGAGAGATCCAAAAAGGAAGATTGGGGCA < 41bp 1 0.446640161942534 1 0.376935213804245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36755116 chr1:36755130 nonsynonymous SNV 0.993 4 35 hm5C_associated_SNPs_36724 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36327 DeepMRMD:1;iRNA_m5C:0.999536712157815 36328 chr2 202141612 202141612 1 + T A STAD 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAAACA < 41bp 1 0.239177451776463 1 0.207731187343597 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141612 nonsynonymous SNV 0.362 4 39 hm5C_associated_SNPs_36725 0 0 1 0 1 Nucleus 1 0.500231642292442 1 0.999536715415115 hm5C_site_36328 DeepMRMD:1;iRNA_m5C:0.999536715415115 36329 chr20 35176475 35176475 1 + C T STAD 35176493 + 35176473 35176513 41 AGCGAGGCCCCGGGGCCCATCAACTTCACCATGTTCCTCAC AGTGAGGCCCCGGGGCCCATCAACTTCACCATGTTCCTCAC < 41bp 1 0.603032223169527 1 0.867127954959869 experiment 0.793935553660946 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYL9 ENSG00000101335 CDS Human protein_coding chr20:35176493 chr20:35176475 synonymous SNV . 0 3 hm5C_associated_SNPs_36726 0 0 0 0 1 Cytosol 1 0.500231643921098 0.265744090080262 0.999536712157804 hm5C_site_36329 DeepMRMD:0.265744090080262;iRNA_m5C:0.999536712157804 36330 chr16 4700454 4700454 1 + T C STAD 4700472 + 4700452 4700492 41 GATCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT GACCTGAACTTCCTGGGCAGCCGCCCGGTCCAGGTGGGTCT < 41bp 1 0.0946833178794894 1 0.0814388394355774 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4700472 chr16:4700454 synonymous SNV . 0 3 hm5C_associated_SNPs_36727 0 0 1 1 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36330 DeepMRMD:1;iRNA_m5C:0.999536712157815 36331 chr22 41322429 41322429 1 + A G STAD 41322444 + 41322424 41322464 41 CAGCCAGGCTTCTTGACCTTCACTGCGGCCCACATGCACCT CAGCCGGGCTTCTTGACCTTCACTGCGGCCCACATGCACCT < 41bp 1 0.340864604716423 1 0.428288191556931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient XPNPEP3 ENSG00000196236 CDS Human protein_coding chr22:41322444 chr22:41322429 nonsynonymous SNV 0.005 0 6 hm5C_associated_SNPs_36728 0 0 1 0 1 Ribosome 1 0.500231530502091 1 0.999536938995817 hm5C_site_36331 DeepMRMD:1;iRNA_m5C:0.999536938995817 36332 chr17 77043914 77043914 1 + T C STAD 77043900 + 77043880 77043920 41 TACTGCTACGTGCCCGGCCTCTACTTCTTCAGCCTCAACGT TACTGCTACGTGCCCGGCCTCTACTTCTTCAGCCCCAACGT < 41bp 1 0.311212334482045 1 0.0902510583400726 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77043900 chr17:77043914 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_36730 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_36332 DeepMRMD:1;iRNA_m5C:0.999536712157813 36333 chr2 207636937 207636937 1 + A T STAD 207636939 + 207636919 207636959 41 TGTCCTTTAAGAATAATGATCAACATATTGCAGTCCTGCAA TGTCCTTTAAGAATAATGTTCAACATATTGCAGTCCTGCAA < 41bp 1 0.630789960544124 1 0.234112858772278 experiment 0.738420078911752 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207636939 chr2:207636937 nonsynonymous SNV 0.944 0 19 hm5C_associated_SNPs_36731 0 0 1 0 1 Nucleus 1 0.500231691179387 1 0.999536617641226 hm5C_site_36333 DeepMRMD:1;iRNA_m5C:0.999536617641226 36334 chr2 217366124 217366124 1 + G A STAD 217366129 + 217366109 217366149 41 GGAGTTGAAAGACCAGTAGACGCTCCTCTACTCTTTGAGAC GGAGTTGAAAGACCAATAGACGCTCCTCTACTCTTTGAGAC < 41bp 1 0.467355423025001 1 0.0951938629150391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL37A ENSG00000197756 CDS Human protein_coding chr2:217366129 chr2:217366124 synonymous SNV . 0 16 hm5C_associated_SNPs_36732 0 0 1 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36334 DeepMRMD:1;iRNA_m5C:0.999536712157815 36335 chr7 133164813 133164813 1 + G A STAD 133164812 + 133164792 133164832 41 GTTTCTCTGCAGGTTCGAATCGTCCTCCCATGCCATCAGTA GTTTCTCTGCAGGTTCGAATCATCCTCCCATGCCATCAGTA < 41bp 1 0.20849320550638 1 0.0720341205596924 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC4 ENSG00000131558 CDS Human protein_coding chr7:133164812 chr7:133164813 synonymous SNV . 0 22 hm5C_associated_SNPs_36734 0 0 1 0 2 Nucleus 1 0.500231643921094 1 0.999536712157813 hm5C_site_36335 DeepMRMD:1;iRNA_m5C:0.999536712157813 36336 chr2 113315657 113315657 1 + A G STAD 113315643 + 113315623 113315663 41 ACCTTTTTGCTACTGGGAATCTGCGTTCTAAAACAGGTAAA ACCTTTTTGCTACTGGGAATCTGCGTTCTAAAACGGGTAAA < 41bp 1 0.581052289937657 1 0.738670468330383 experiment 0.837895420124685 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113315643 chr2:113315657 synonymous SNV . 0 35 hm5C_associated_SNPs_36735 0 0 1 0 1 Nucleus 1 0.50023164408945 0.522659063339234 0.999536711821101 hm5C_site_36336 DeepMRMD:0.522659063339234;iRNA_m5C:0.999536711821101 36337 chr17 4685824 4685824 1 + G A STAD 4685815 + 4685795 4685835 41 CAGATGCTGCGCTCGGTCTTCTCCTCGGCGTTCGGGGTGCT CAGATGCTGCGCTCGGTCTTCTCCTCGGCATTCGGGGTGCT < 41bp 1 0.407355824803606 1 0.21045383810997 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4685815 chr17:4685824 synonymous SNV . 0 30 hm5C_associated_SNPs_36736 0 0 1 0 1 cytosol 1 0.500231643938404 1 0.999536712123192 hm5C_site_36337 DeepMRMD:1;iRNA_m5C:0.999536712123192 36338 chr16 29818097 29818097 1 + C T STAD 29818116 + 29818096 29818136 41 GCGGCCTCATGAACTCCTTCCCGCCACCTCAGGGTCACGCC GTGGCCTCATGAACTCCTTCCCGCCACCTCAGGGTCACGCC < 41bp 1 0.191548894062428 1 0.0557226240634918 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAZ ENSG00000103495 CDS Human protein_coding chr16:29818116 chr16:29818097 synonymous SNV . 0 2 hm5C_associated_SNPs_36737 0 0 1 0 0 Cytosol 1 0.50023162070972 1 0.99953675858056 hm5C_site_36338 DeepMRMD:1;iRNA_m5C:0.99953675858056 36339 chr19 11145661 11145661 1 + C T STAD 11145668 + 11145648 11145688 41 TCATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGAC TCATGGAGGAGGATGAGCTCCCCTCGTGGATCATCAAGGAC < 41bp 1 0.0827526336081315 1 0.112086802721024 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145668 chr19:11145661 synonymous SNV . 0 14 hm5C_associated_SNPs_36740 1 0 1 0 1 Nucleus 1 0.500231478299016 1 0.999537043401968 hm5C_site_36339 DeepMRMD:1;iRNA_m5C:0.999537043401968 Rhabdoid tumor predisposition syndrome 2 Rhabdoid tumor predisposition syndrome 2 36340 chr19 11145661 11145661 1 + C T STAD 11145669 + 11145649 11145689 41 CATGGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACG CATGGAGGAGGATGAGCTCCCCTCGTGGATCATCAAGGACG < 41bp 1 0.203049374546142 1 0.162261873483658 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145669 chr19:11145661 synonymous SNV . 0 13 hm5C_associated_SNPs_36741 1 0 1 0 1 Nucleus 1 0.500231643915703 1 0.999536712168595 hm5C_site_36340 DeepMRMD:1;iRNA_m5C:0.999536712168595 Rhabdoid tumor predisposition syndrome 2 Rhabdoid tumor predisposition syndrome 2 36341 chr19 11145661 11145661 1 + C T STAD 11145672 + 11145652 11145692 41 GGAGGAGGACGAGCTCCCCTCGTGGATCATCAAGGACGACG GGAGGAGGATGAGCTCCCCTCGTGGATCATCAAGGACGACG < 41bp 1 0.587987184946768 1 0.696264922618866 experiment 0.824025630106465 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145672 chr19:11145661 synonymous SNV . 0 10 hm5C_associated_SNPs_36742 1 0 1 0 1 Nucleus 1 0.500231643920547 0.607470154762268 0.999536712158907 hm5C_site_36341 DeepMRMD:0.607470154762268;iRNA_m5C:0.999536712158907 Rhabdoid tumor predisposition syndrome 2 Rhabdoid tumor predisposition syndrome 2 36342 chr9 18504860 18504860 1 + G A STAD 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGAACGGCCTATGGGATGCCTGGGG < 41bp 1 0.40168912688798 1 0.493451625108719 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504860 nonsynonymous SNV 0.938 2 19 hm5C_associated_SNPs_36743 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36342 DeepMRMD:1;iRNA_m5C:0.999536712157815 36343 chr10 102763509 102763509 1 + C T STAD 102763493 + 102763473 102763513 41 TGGCTGGGCCAGTGGCTGCCCATCAGGGACGCTATCCGACT TGGCTGGGCCAGTGGCTGCCCATCAGGGACGCTATCTGACT < 41bp 1 0.401861029136419 1 0.275818973779678 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102763493 chr10:102763509 synonymous SNV . 0 37 hm5C_associated_SNPs_36744 0 0 1 0 0 Ribosome 1 0.501729322991245 1 0.99654135401751 hm5C_site_36343 DeepMRMD:1;iRNA_m5C:0.99654135401751 36344 chr6 7727443 7727443 1 + G A STAD 7727453 + 7727433 7727473 41 AGATCTTGTCGGTGCTGGGGCTCCCGCACCGGCCCCGGCCC AGATCTTGTCAGTGCTGGGGCTCCCGCACCGGCCCCGGCCC < 41bp 1 0.455865997416882 1 0.181911051273346 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP6 ENSG00000153162 CDS Human protein_coding chr6:7727453 chr6:7727443 synonymous SNV . 0 11 hm5C_associated_SNPs_36745 0 0 0 0 0 Ribosome 1 0.500231644564322 1 0.999536710871356 hm5C_site_36344 DeepMRMD:1;iRNA_m5C:0.999536710871356 36345 chr4 5733332 5733332 1 + A G STAD 5733343 + 5733323 5733363 41 AGGTTTCTCAGCCGCACCTTCCTCCGGGTGAACGCCTTCCC AGGTTTCTCGGCCGCACCTTCCTCCGGGTGAACGCCTTCCC < 41bp 1 0.0549165807766399 1 0.0833012461662292 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVC ENSG00000072840 CDS Human protein_coding chr4:5733343 chr4:5733332 nonsynonymous SNV 0.002 0 10 hm5C_associated_SNPs_36746 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36345 DeepMRMD:1;iRNA_m5C:0.999536712157815 36346 chr1 94012462 94012462 1 + T C STAD 94012454 + 94012434 94012474 41 AGAATCCACAAATGGGGGATCCAGGGAGTTTGCAGCCTAAA AGAATCCACAAATGGGGGATCCAGGGAGCTTGCAGCCTAAA < 41bp 1 0.318513693126084 1 0.630068600177765 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FNBP1L ENSG00000137942 CDS Human protein_coding chr1:94012454 chr1:94012462 synonymous SNV . 0 29 hm5C_associated_SNPs_36747 0 0 1 0 2 Nucleus 1 0.500231643921092 0.73986279964447 0.999536712157815 hm5C_site_36346 DeepMRMD:0.73986279964447;iRNA_m5C:0.999536712157815 36347 chr3 49060598 49060598 1 + C T STAD 49060591 + 49060571 49060611 41 CTTCACTTACATCTTTGGGCCAAGCTGCTCAATGAACCGCC CTTCACTTACATCTTTGGGCCAAGCTGTTCAATGAACCGCC < 41bp 1 0.288418265246377 1 0.432418286800385 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060591 chr3:49060598 nonsynonymous SNV 0.005 2 28 hm5C_associated_SNPs_36748 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36347 DeepMRMD:1;iRNA_m5C:0.999536712157815 36348 chr19 10200691 10200691 1 + G A STAD 10200684 + 10200664 10200704 41 CAGTTTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCG CAGTTTGCCTGCTCCTCCTGCGACCACATCTGGTGGCGCCG < 41bp 1 0.209226487168186 1 0.471001207828522 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200684 chr19:10200691 nonsynonymous SNV 0.998 0 28 hm5C_associated_SNPs_36749 0 0 1 0 1 Ribosome 1 0.500231643921678 1 0.999536712156644 hm5C_site_36348 DeepMRMD:1;iRNA_m5C:0.999536712156644 36349 chr19 10200691 10200691 1 + G A STAD 10200688 + 10200668 10200708 41 TTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCGCGTG TTGCCTGCTCCTCCTGCGACCACATCTGGTGGCGCCGCGTG < 41bp 1 0.373718208671044 1 0.268994629383087 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200688 chr19:10200691 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_36750 0 0 1 0 1 Ribosome 1 0.500231656930282 1 0.999536686139435 hm5C_site_36349 DeepMRMD:1;iRNA_m5C:0.999536686139435 36350 chr2 97875442 97875442 1 + T G STAD 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGTCTTCTCGGAAAAAACCAGCCTGGAAGGTAATGAAAC < 41bp 1 0.260666898366529 1 0.386959731578827 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875442 nonsynonymous SNV 0.008 1 27 hm5C_associated_SNPs_36751 0 0 0 0 1 Cytosol 1 0.500231643912006 1 0.999536712175987 hm5C_site_36350 DeepMRMD:1;iRNA_m5C:0.999536712175987 36351 chr4 2943337 2943337 1 + G A STAD 2943341 - 2943321 2943361 41 AAGCCCTCCTCACGGATCACCTGGCGGACTGCAGCCACCCG AAGCCCTCCTCACGGATCACCTGGTGGACTGCAGCCACCCG < 41bp 1 0.658971660131499 1 0.507306277751923 experiment 0.682056679737002 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOP14 ENSG00000087269 CDS Human protein_coding chr4:2943341 chr4:2943337 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_36752 0 0 1 0 1 Nucleus 1 0.500231643921094 0.985387444496154 0.999536712157811 hm5C_site_36351 DeepMRMD:0.985387444496154;iRNA_m5C:0.999536712157811 36352 chr11 61404831 61404831 1 + C T STAD 61404820 + 61404800 61404840 41 GAGGGTGTCCGCAATGTTGCCGGTGTCTGTCCGCAGATCCA GAGGGTGTCCGCAATGTTGCCGGTGTCTGTCTGCAGATCCA < 41bp 1 0.452336077878273 1 0.307656347751617 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404820 chr11:61404831 . . 0 32 hm5C_associated_SNPs_36753 0 0 0 0 0 unknown 1 0.500231654891651 1 0.999536690216698 hm5C_site_36352 DeepMRMD:1;iRNA_m5C:0.999536690216698 36353 chr11 66627389 66627389 1 + C G STAD 66627381 + 66627361 66627401 41 GTGGCCTTGCTGGTTCGGGGCCGGGGGGCCGGAAATGGCCG GTGGCCTTGCTGGTTCGGGGCCGGGGGGGCGGAAATGGCCG < 41bp 1 0.655790654460743 1 0.510282516479492 experiment 0.688418691078514 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627381 chr11:66627389 nonsynonymous SNV 0.760 0 29 hm5C_associated_SNPs_36756 0 0 0 0 0 Ribosome 1 0.500231643921092 0.979434967041016 0.999536712157815 hm5C_site_36353 DeepMRMD:0.979434967041016;iRNA_m5C:0.999536712157815 36354 chrX 21874825 21874825 1 + G A STAD 21874808 + 21874788 21874828 41 GCAGCCGCTCTTCACGAACACGGGCTATGGCGACCACGACC GCAGCCGCTCTTCACGAACACGGGCTATGGCGACCACAACC < 41bp 1 0.642208574228231 1 0.728999495506287 experiment 0.715582851543538 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YY2 ENSG00000230797 CDS Human protein_coding chrX:21874808 chrX:21874825 nonsynonymous SNV 0.005 1 38 hm5C_associated_SNPs_36757 0 0 0 0 0 exosome 1 0.500231636473174 0.542001008987426 0.999536727053651 hm5C_site_36354 DeepMRMD:0.542001008987426;iRNA_m5C:0.999536727053651 36355 chr22 39826100 39826100 1 + G A STAD 39826113 + 39826093 39826133 41 CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA CTCTTCCACTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA < 41bp 1 0.0861321240192761 1 0.184441298246384 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39826113 chr22:39826100 nonsynonymous SNV 0.984 1 8 hm5C_associated_SNPs_36758 0 0 1 0 1 Cytosol 1 0.500231643920479 1 0.999536712159042 hm5C_site_36355 DeepMRMD:1;iRNA_m5C:0.999536712159042 36356 chr1 198231732 198231732 1 + C T STAD 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCATGTGCTGATTGCATCAAAGAAATAG < 41bp 1 0.20943667974471 1 0.0947313904762268 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231732 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_36760 0 0 1 0 2 Nucleus 1 0.500231646029355 1 0.999536707941291 hm5C_site_36356 DeepMRMD:1;iRNA_m5C:0.999536707941291 36357 chr1 198231732 198231732 1 + C T STAD 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCATGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA < 41bp 1 0.297207096149452 1 0.731647610664368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231732 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_36761 0 0 1 0 2 Nucleus 1 0.500230144481175 0.536704778671264 0.999539711037649 hm5C_site_36357 DeepMRMD:0.536704778671264;iRNA_m5C:0.999539711037649 36358 chr15 94841688 94841688 1 + G A STAD 94841673 + 94841653 94841693 41 TGATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCGGC TGATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGACCGGC < 41bp 1 0.192826262298465 1 0.12915027141571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841673 chr15:94841688 nonsynonymous SNV 0.616 0 36 hm5C_associated_SNPs_36762 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_36358 DeepMRMD:1;iRNA_m5C:0.999536712157816 36359 chr15 94841688 94841688 1 + G A STAD 94841674 + 94841654 94841694 41 GATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCGGCC GATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGACCGGCC < 41bp 1 0.674460149719556 1 0.572042763233185 experiment 0.651079700560887 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841674 chr15:94841688 nonsynonymous SNV 0.616 0 35 hm5C_associated_SNPs_36763 0 0 0 0 0 exosome 1 0.500231643921092 0.85591447353363 0.999536712157817 hm5C_site_36359 DeepMRMD:0.85591447353363;iRNA_m5C:0.999536712157817 36360 chr6 43188290 43188290 1 + G A STAD 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCCAGCCCACCAGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.491238916296696 1 0.537998378276825 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188290 nonsynonymous SNV 0.949 2 16 hm5C_associated_SNPs_36764 0 0 0 0 2 chromatin 1 0.500231634530083 0.92400324344635 0.999536730939833 hm5C_site_36360 DeepMRMD:0.92400324344635;iRNA_m5C:0.999536730939833 36361 chr17 46128574 46128574 1 + C T STAD 46128578 + 46128558 46128598 41 GGACGTGGATACTTACCTGACCTCACAGCTTCCCCCACTCC GGACGTGGATACTTACTTGACCTCACAGCTTCCCCCACTCC < 41bp 1 0.227390301498445 1 0.0230481028556824 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128578 chr17:46128574 synonymous SNV . 0 17 hm5C_associated_SNPs_36765 0 0 1 0 1 Ribosome 1 0.500231643921071 1 0.999536712157859 hm5C_site_36361 DeepMRMD:1;iRNA_m5C:0.999536712157859 36362 chr17 46128574 46128574 1 + C T STAD 46128592 + 46128572 46128612 41 ACCTGACCTCACAGCTTCCCCCACTCCGGGAGATCATCCTG ACTTGACCTCACAGCTTCCCCCACTCCGGGAGATCATCCTG < 41bp 1 0.16948421263791 1 0.0754382610321045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128592 chr17:46128574 synonymous SNV . 0 3 hm5C_associated_SNPs_36766 0 0 1 0 1 Ribosome 1 0.500231643920743 1 0.999536712158513 hm5C_site_36362 DeepMRMD:1;iRNA_m5C:0.999536712158513 36363 chr12 113379501 113379501 1 + C T STAD 113379481 + 113379461 113379501 41 GGACCAGAGGGCCCGCCGTGCAGAGATCCTCAGTGAGATGC GGACCAGAGGGCCCGCCGTGCAGAGATCCTCAGTGAGATGT < 41bp 1 0.584955936712942 1 0.464042186737061 experiment 0.830088126574115 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113379481 chr12:113379501 nonsynonymous SNV 0.003 0 41 hm5C_associated_SNPs_36767 0 0 1 0 0 Nucleus 1 0.500231644057766 1 0.999536711884468 hm5C_site_36363 DeepMRMD:1;iRNA_m5C:0.999536711884468 36364 chr11 95546138 95546138 1 + G C STAD 95546139 + 95546119 95546159 41 CTTCAAGATAAGATTCGACGCTTGGAACTTGAGAGGATTCA CTTCAAGATAAGATTCGACCCTTGGAACTTGAGAGGATTCA < 41bp 1 0.460909257792798 1 0.0597018599510193 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP57 ENSG00000166037 CDS Human protein_coding chr11:95546139 chr11:95546138 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_36768 0 0 1 0 3 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36364 DeepMRMD:1;iRNA_m5C:0.999536712157815 36365 chr1 10394612 10394612 1 + G A STAD 10394600 + 10394580 10394620 41 CATTTGTTTACCTGAGCAATCTGCTGTATCCCGTGCCCCTG CATTTGTTTACCTGAGCAATCTGCTGTATCCCATGCCCCTG < 41bp 1 0.481191055550091 1 0.488134384155273 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10394600 chr1:10394612 nonsynonymous SNV 0.945 4 33 hm5C_associated_SNPs_36769 0 0 1 0 2 Cytosol 1 0.50023117038996 1 0.99953765922008 hm5C_site_36365 DeepMRMD:1;iRNA_m5C:0.99953765922008 36366 chr8 145583773 145583773 1 + A G STAD 145583775 + 145583755 145583795 41 TGCCCTTCTGGTCGCTTCAGCTGCTGCCTTCCAGGGTCTTC TGCCCTTCTGGTCGCTTCGGCTGCTGCCTTCCAGGGTCTTC < 41bp 1 0.285444911351919 1 0.0960708856582642 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC52A2 ENSG00000185803;ENSG00000185803 exonic;splicing Human other chr8:145583775 chr8:145583773 synonymous SNV 0.017 0 19 hm5C_associated_SNPs_36771 0 0 1 0 0 Ribosome 1 0.500231643922618 1 0.999536712154764 hm5C_site_36366 DeepMRMD:1;iRNA_m5C:0.999536712154764 36367 chr1 112305362 112305362 1 + T C STAD 112305377 + 112305357 112305397 41 TGGATTGGGAGACATACATGCATCGGATTGGGAGAGCTGGC TGGATCGGGAGACATACATGCATCGGATTGGGAGAGCTGGC < 41bp 1 0.42307615212803 1 0.151143282651901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305377 chr1:112305362 nonsynonymous SNV 0.998 1 6 hm5C_associated_SNPs_36772 0 0 1 0 2 Ribosome 1 0.500231642923014 1 0.999536714153973 hm5C_site_36367 DeepMRMD:1;iRNA_m5C:0.999536714153973 36368 chr4 6862970 6862970 1 + G A STAD 6862975 + 6862955 6862995 41 GATTCGCCCTCGCTCGTGGTCTTCTGGCTCCAGTGAAGCAG GATTCGCCCTCGCTCATGGTCTTCTGGCTCCAGTGAAGCAG < 41bp 1 0.320457519767716 1 0.0481880307197571 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0232 ENSG00000170871 CDS Human protein_coding chr4:6862975 chr4:6862970 synonymous SNV . 0 16 hm5C_associated_SNPs_36774 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36368 DeepMRMD:1;iRNA_m5C:0.999536712157815 36369 chr3 32932817 32932817 1 + G A STAD 32932816 + 32932796 32932836 41 CAACTACCCTTGGGATGTGGCGGTGAATTCTGAGGGCAAGA CAACTACCCTTGGGATGTGGCAGTGAATTCTGAGGGCAAGA < 41bp 1 0.239949332025193 1 0.16388127207756 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32932816 chr3:32932817 synonymous SNV . 0 22 hm5C_associated_SNPs_36775 0 0 1 0 0 cytosol 1 0.500231643972957 1 0.999536712054086 hm5C_site_36369 DeepMRMD:1;iRNA_m5C:0.999536712054086 36370 chr11 64054328 64054328 1 + C T STAD 64054320 + 64054300 64054340 41 CCCGTCTGCCTGCAGTTCTTCACCTTGACGCTTATGAACCT CCCGTCTGCCTGCAGTTCTTCACCTTGATGCTTATGAACCT < 41bp 1 0.317462684771939 1 0.140361398458481 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPR137 ENSG00000173264 CDS Human protein_coding chr11:64054320 chr11:64054328 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_36776 0 0 1 0 1 Cytosol 1 0.500231643438688 1 0.999536713122623 hm5C_site_36370 DeepMRMD:1;iRNA_m5C:0.999536713122623 36371 chr1 16199371 16199371 1 + T C STAD 16199355 + 16199335 16199375 41 AATTCTTCCCAAGAGGGGATCTGAAGGAGGAGTGGCTGCCT AATTCTTCCCAAGAGGGGATCTGAAGGAGGAGTGGCCGCCT < 41bp 1 0.486868114424013 1 0.876042723655701 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16199355 chr1:16199371 synonymous SNV . 0 37 hm5C_associated_SNPs_36779 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.247914552688598 0.999536712157815 hm5C_site_36371 DeepMRMD:0.247914552688598;iRNA_m5C:0.999536712157815 36372 chr17 49247316 49247316 1 + G A STAD 49247300 + 49247280 49247320 41 CATTTTCACACTTTCGAGGTCTGGGAGGGGCTGAACGTGGT CATTTTCACACTTTCGAGGTCTGGGAGGGGCTGAACATGGT < 41bp 1 0.577458446211024 1 0.316820859909058 experiment 0.845083107577951 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247300 chr17:49247316 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_36780 0 0 1 0 2 unknown 1 0.500232838230627 1 0.999534323538745 hm5C_site_36372 DeepMRMD:1;iRNA_m5C:0.999534323538745 36373 chr17 49247316 49247316 1 + G A STAD 49247310 + 49247290 49247330 41 CTTTCGAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGC CTTTCGAGGTCTGGGAGGGGCTGAACATGGTGAAGACAGGC < 41bp 1 0.588865080870911 1 0.423196315765381 experiment 0.822269838258178 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247310 chr17:49247316 nonsynonymous SNV 0.998 2 27 hm5C_associated_SNPs_36781 0 0 1 0 2 unknown 1 0.500231614347092 1 0.999536771305817 hm5C_site_36373 DeepMRMD:1;iRNA_m5C:0.999536771305817 36374 chr17 49247316 49247316 1 + G A STAD 49247315 + 49247295 49247335 41 GAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGCCGAGT GAGGTCTGGGAGGGGCTGAACATGGTGAAGACAGGCCGAGT < 41bp 1 0.559159222676503 1 0.557732820510864 experiment 0.881681554646995 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247315 chr17:49247316 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_36782 0 0 1 0 2 unknown 1 0.500231643921092 0.884534358978272 0.999536712157815 hm5C_site_36374 DeepMRMD:0.884534358978272;iRNA_m5C:0.999536712157815 36375 chr19 45162145 45162145 1 + G T STAD 45162132 + 45162112 45162152 41 TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCACTGT TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTTGCACTGT < 41bp 1 0.660425588626399 1 0.309503257274628 experiment 0.679148822747202 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162132 chr19:45162145 nonsynonymous SNV 0.015 1 34 hm5C_associated_SNPs_36783 0 0 1 0 1 Ribosome 1 0.500231643922386 1 0.999536712155229 hm5C_site_36375 DeepMRMD:1;iRNA_m5C:0.999536712155229 36376 chr19 45162145 45162145 1 + G T STAD 45162140 + 45162120 45162160 41 TCCAAATGTTCCCGTGAGGTCCTTTGGCACTGTCATCTGTG TCCAAATGTTCCCGTGAGGTCCTTTTGCACTGTCATCTGTG < 41bp 1 0.0215548248218199 1 0.0331388711929321 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162140 chr19:45162145 nonsynonymous SNV 0.015 1 26 hm5C_associated_SNPs_36784 0 0 1 0 1 Ribosome 1 0.500357265733226 1 0.999285468533547 hm5C_site_36376 DeepMRMD:1;iRNA_m5C:0.999285468533547 36377 chr3 49212181 49212181 1 + G A STAD 49212179 + 49212159 49212199 41 CCAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGT CCAATTCCATTGACAGGGGGCCACCAGGGCAAGCTCCCGGT < 41bp 1 0.0420646880920306 1 0.174683809280396 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212179 chr3:49212181 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_36785 0 0 1 0 1 Cytosol 1 0.500231643972199 1 0.999536712055602 hm5C_site_36377 DeepMRMD:1;iRNA_m5C:0.999536712055602 36378 chr3 49212181 49212181 1 + G A STAD 49212180 + 49212160 49212200 41 CAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGTG CAATTCCATTGACAGGGGGCCACCAGGGCAAGCTCCCGGTG < 41bp 1 0.603911325724489 1 0.184136390686035 experiment 0.792177348551022 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212180 chr3:49212181 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_36786 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_36378 DeepMRMD:1;iRNA_m5C:0.999536712157815 36379 chr19 58904820 58904820 1 + C T STAD 58904832 + 58904812 58904852 41 ACGACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACC ACGACAGGTTGTGGATGTGTCCCCCCTGCGCCGTGTGAACC < 41bp 1 0.291500109309387 1 0.0568946301937103 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904832 chr19:58904820 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_36787 0 0 1 0 2 Ribosome 1 0.500231643927764 1 0.999536712144473 hm5C_site_36379 DeepMRMD:1;iRNA_m5C:0.999536712144473 36380 chr19 58904820 58904820 1 + C T STAD 58904833 + 58904813 58904853 41 CGACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCA CGACAGGTTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCA < 41bp 1 0.442956716312429 1 0.107477694749832 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904833 chr19:58904820 nonsynonymous SNV 0.998 4 8 hm5C_associated_SNPs_36788 0 0 1 0 2 Ribosome 1 0.500231643768439 1 0.999536712463123 hm5C_site_36380 DeepMRMD:1;iRNA_m5C:0.999536712463123 36381 chr19 58904820 58904820 1 + C T STAD 58904834 + 58904814 58904854 41 GACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCAG GACAGGTTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCAG < 41bp 1 0.470802818623955 1 0.117296785116196 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904834 chr19:58904820 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_36789 0 0 1 0 2 Ribosome 1 0.500231643923089 1 0.999536712153822 hm5C_site_36381 DeepMRMD:1;iRNA_m5C:0.999536712153822 36382 chr2 24974860 24974860 1 + C T STAD 24974873 + 24974853 24974893 41 ATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAG ATGGTTCTCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAG < 41bp 1 0.242858208002813 1 0.109321683645248 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24974873 chr2:24974860 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_36791 0 0 0 0 1 Cytosol 1 0.500231644286333 1 0.999536711427335 hm5C_site_36382 DeepMRMD:1;iRNA_m5C:0.999536711427335 36383 chr14 74424920 74424920 1 + C A STAD 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGGCCGAATCCAGCCCTTGGGTTCATATTAC < 41bp 1 0.497661153840606 1 0.150724023580551 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424920 nonsynonymous SNV 0.998 1 18 hm5C_associated_SNPs_36792 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36383 DeepMRMD:1;iRNA_m5C:0.999536712157815 36384 chr1 193205392 193205392 1 + C T STAD 193205390 + 193205370 193205410 41 ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGTG ACTTTTCTACTTGTAGGGACCGTGTTGTAGCCGTTTTTGTG < 41bp 1 0.403956203743908 1 0.10509404540062 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205390 chr1:193205392 synonymous SNV . 0 23 hm5C_associated_SNPs_36793 0 0 1 0 2 Ribosome 1 0.500231643899252 1 0.999536712201497 hm5C_site_36384 DeepMRMD:1;iRNA_m5C:0.999536712201497 36385 chr19 36277956 36277956 1 + G T STAD 36277969 + 36277949 36277989 41 GCTCCGGGGAGCCCAGGGCCCACTCGGTGAGTCCTCAGCCT GCTCCGGTGAGCCCAGGGCCCACTCGGTGAGTCCTCAGCCT < 41bp 1 0.304094610600674 1 0.110170662403107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36277969 chr19:36277956 stopgain 0.702 0 8 hm5C_associated_SNPs_36794 0 0 1 0 0 chromatin 1 0.500231621899765 1 0.99953675620047 hm5C_site_36385 DeepMRMD:1;iRNA_m5C:0.99953675620047 36386 chr12 110474086 110474086 1 + G A STAD 110474069 + 110474049 110474089 41 ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCGAAT ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCAAAT < 41bp 1 0.0350469760446668 1 0.0505074858665466 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110474069 chr12:110474086 nonsynonymous SNV 0.988 0 38 hm5C_associated_SNPs_36795 0 0 1 0 2 chromatin 1 0.500231643968941 1 0.999536712062118 hm5C_site_36386 DeepMRMD:1;iRNA_m5C:0.999536712062118 36387 chr16 72048403 72048403 1 + A G STAD 72048390 + 72048370 72048410 41 AGGAAGTGAGAGTTCTGGGCCATAAATTCCGAAATCCAGTA AGGAAGTGAGAGTTCTGGGCCATAAATTCCGAAGTCCAGTA < 41bp 1 0.301102302880511 1 0.0599216222763062 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHODH ENSG00000102967 CDS Human protein_coding chr16:72048390 chr16:72048403 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_36796 0 0 1 1 1 Endoplasmic reticulum 1 0.500231643911116 1 0.999536712177769 hm5C_site_36387 DeepMRMD:1;iRNA_m5C:0.999536712177769 36388 chr11 64802601 64802601 1 + C T STAD 64802597 + 64802577 64802617 41 TCCTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGAC TCCTGCCACCCCCTCTGATCCCCATCCCGCCCCCTGATGAC < 41bp 1 0.146160847249748 1 0.0379718244075775 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802597 chr11:64802601 nonsynonymous SNV 0.889 2 25 hm5C_associated_SNPs_36797 0 0 1 0 1 Ribosome 1 0.500231643922614 1 0.999536712154772 hm5C_site_36388 DeepMRMD:1;iRNA_m5C:0.999536712154772 36389 chr11 64802601 64802601 1 + C T STAD 64802598 + 64802578 64802618 41 CCTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACC CCTGCCACCCCCTCTGATCCCCATCCCGCCCCCTGATGACC < 41bp 1 0.0372058046208349 1 0.0814820528030396 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802598 chr11:64802601 nonsynonymous SNV 0.889 2 24 hm5C_associated_SNPs_36798 0 0 1 0 1 Ribosome 1 0.50023164426425 1 0.9995367114715 hm5C_site_36389 DeepMRMD:1;iRNA_m5C:0.9995367114715 36390 chr11 64802601 64802601 1 + C T STAD 64802599 + 64802579 64802619 41 CTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCC CTGCCACCCCCTCTGATCCCCATCCCGCCCCCTGATGACCC < 41bp 1 0.0776866834783444 1 0.0891011953353882 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802599 chr11:64802601 nonsynonymous SNV 0.889 2 23 hm5C_associated_SNPs_36799 0 0 1 0 1 Ribosome 1 0.5002316439211 1 0.999536712157801 hm5C_site_36390 DeepMRMD:1;iRNA_m5C:0.999536712157801 36391 chr11 64802601 64802601 1 + C T STAD 64802602 + 64802582 64802622 41 CCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCCG CCACCCCCTCTGATCCCCATCCCGCCCCCTGATGACCCCCG < 41bp 1 0.175615925437437 1 0.50740247964859 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802602 chr11:64802601 nonsynonymous SNV 0.889 2 20 hm5C_associated_SNPs_36800 0 0 1 0 1 Ribosome 1 0.500231641103093 0.98519504070282 0.999536717793814 hm5C_site_36391 DeepMRMD:0.98519504070282;iRNA_m5C:0.999536717793814 36392 chr11 64802601 64802601 1 + C T STAD 64802603 + 64802583 64802623 41 CACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCCGG CACCCCCTCTGATCCCCATCCCGCCCCCTGATGACCCCCGG < 41bp 1 0.155411117216497 1 0.769716262817383 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802603 chr11:64802601 nonsynonymous SNV 0.889 2 19 hm5C_associated_SNPs_36801 0 0 1 0 1 Ribosome 1 0.500231643921078 0.460567474365234 0.999536712157843 hm5C_site_36392 DeepMRMD:0.460567474365234;iRNA_m5C:0.999536712157843 36393 chr11 64802601 64802601 1 + C T STAD 64802604 + 64802584 64802624 41 ACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCCGGC ACCCCCTCTGATCCCCATCCCGCCCCCTGATGACCCCCGGC < 41bp 1 0.316883512279928 1 0.364389538764954 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802604 chr11:64802601 nonsynonymous SNV 0.889 2 18 hm5C_associated_SNPs_36802 0 0 1 0 1 Ribosome 1 0.500231643920164 1 0.999536712159672 hm5C_site_36393 DeepMRMD:1;iRNA_m5C:0.999536712159672 36394 chr21 46900409 46900409 1 + T C STAD 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTCCGGGGGCGATCTGGAGGCCCTGCGGGT < 41bp 1 0.0412321318565534 1 0.200352817773819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900409 nonsynonymous SNV 0.010 3 14 hm5C_associated_SNPs_36803 0 0 1 0 2 Nucleus 1 0.500231642700855 1 0.999536714598289 hm5C_site_36394 DeepMRMD:1;iRNA_m5C:0.999536714598289 36395 chr19 17313032 17313032 1 + A G STAD 17313031 + 17313011 17313051 41 GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT GAGCGTGGCCAGAAGGACACCGACCTGGTCCTCAACCTCTT < 41bp 1 0.18253510254087 1 0.147749423980713 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17313031 chr19:17313032 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_36805 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36395 DeepMRMD:1;iRNA_m5C:0.999536712157815 36396 chr4 155665965 155665965 1 + C T STAD 155665967 + 155665947 155665987 41 CTGTGGAACAACTGCGAGCACTTCGTGACCTACTGCAGATA CTGTGGAACAACTGCGAGTACTTCGTGACCTACTGCAGATA < 41bp 1 0.404585106675165 1 0.0913062691688538 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRAT ENSG00000121207 CDS Human protein_coding chr4:155665967 chr4:155665965 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_36806 0 0 0 0 1 Nucleus 1 0.500231640970909 1 0.999536718058182 hm5C_site_36396 DeepMRMD:1;iRNA_m5C:0.999536718058182 36397 chr9 80942970 80942970 1 + T C STAD 80942983 + 80942963 80943003 41 TCAGTTGTCCAGTGGAGCCCCAAAATAGAAGCAAGATGAAT TCAGTTGCCCAGTGGAGCCCCAAAATAGAAGCAAGATGAAT < 41bp 1 0.378117213801163 1 0.318397402763367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80942983 chr9:80942970 synonymous SNV . 0 8 hm5C_associated_SNPs_36807 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_36397 DeepMRMD:1;iRNA_m5C:0.999536712157812 36398 chr12 53776184 53776184 1 + C T STAD 53776180 + 53776160 53776200 41 TGGTGGGCAGTATGTTGTGGCTGCCGCTCCCAACTTACAGA TGGTGGGCAGTATGTTGTGGCTGCTGCTCCCAACTTACAGA < 41bp 1 0.321745344500033 1 0.0398411154747009 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SP1 ENSG00000185591 CDS Human protein_coding chr12:53776180 chr12:53776184 synonymous SNV . 0 25 hm5C_associated_SNPs_36808 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_36398 DeepMRMD:1;iRNA_m5C:0.999536712157814 36399 chr10 102762432 102762432 1 + G A STAD 102762420 + 102762400 102762440 41 CCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCGCCACCACG CCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCACCACCACG < 41bp 1 0.323726054072137 1 0.544558048248291 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102762420 chr10:102762432 nonsynonymous SNV 0.525 0 33 hm5C_associated_SNPs_36809 0 0 1 0 0 Ribosome 1 0.500231643921098 0.910883903503418 0.999536712157805 hm5C_site_36399 DeepMRMD:0.910883903503418;iRNA_m5C:0.999536712157805 36400 chr9 80858424 80858424 1 + G A STAD 80858436 + 80858416 80858456 41 GAGTCTTCGCTATAGGAGACCTGATCTTGACTGTATGGCTG GAGTCTTCACTATAGGAGACCTGATCTTGACTGTATGGCTG < 41bp 1 0.28616009869729 1 0.0687117278575897 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP78 ENSG00000148019 CDS Human protein_coding chr9:80858436 chr9:80858424 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_36810 0 0 1 0 1 Nucleus 1 0.500231633755323 1 0.999536732489354 hm5C_site_36400 DeepMRMD:1;iRNA_m5C:0.999536732489354 36401 chr9 136217531 136217531 1 + G A STAD 136217530 + 136217510 136217550 41 AGGGAAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACC AGGGAAAGGCAAGACTGGGACATCTAGTCCACAGGAAGACC < 41bp 1 0.2043171759309 1 0.058914989233017 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136217530 chr9:136217531 nonsynonymous SNV 0.830 1 22 hm5C_associated_SNPs_36811 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36401 DeepMRMD:1;iRNA_m5C:0.999536712157815 36402 chr20 34832791 34832791 1 + C T STAD 34832788 + 34832768 34832808 41 TACCACCAGCTTGGTGAGATCCCCGCTGACTTCTTCGTAGA TACCACCAGCTTGGTGAGATCCCTGCTGACTTCTTCGTAGA < 41bp 1 0.221163367524725 1 0.196328461170197 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control AAR2 ENSG00000131043 CDS Human protein_coding chr20:34832788 chr20:34832791 synonymous SNV . 0 24 hm5C_associated_SNPs_36813 0 0 1 0 1 Ribosome 1 0.500231643921065 1 0.999536712157871 hm5C_site_36402 DeepMRMD:1;iRNA_m5C:0.999536712157871 36403 chr7 139107037 139107037 1 + G A STAD 139107017 + 139106997 139107037 41 CGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAG CGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAA < 41bp 1 0.174055822783729 1 0.0564157366752625 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107017 chr7:139107037 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_36814 0 0 1 0 0 unknown 1 0.500231689942663 1 0.999536620114675 hm5C_site_36403 DeepMRMD:1;iRNA_m5C:0.999536620114675 36404 chr7 139107037 139107037 1 + G A STAD 139107028 + 139107008 139107048 41 GAAGCGGTCCTATGAGAGTGCTAATGGCAGATCAGAAGACA GAAGCGGTCCTATGAGAGTGCTAATGGCAAATCAGAAGACA < 41bp 1 0.332044998719358 1 0.147506952285767 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107028 chr7:139107037 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_36815 0 0 1 0 0 unknown 1 0.500231643940261 1 0.999536712119477 hm5C_site_36404 DeepMRMD:1;iRNA_m5C:0.999536712119477 36405 chr7 139107037 139107037 1 + G A STAD 139107035 + 139107015 139107055 41 TCCTATGAGAGTGCTAATGGCAGATCAGAAGACAGGAGGAG TCCTATGAGAGTGCTAATGGCAAATCAGAAGACAGGAGGAG < 41bp 1 0.404547886869566 1 0.149049699306488 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107035 chr7:139107037 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_36816 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_36405 DeepMRMD:1;iRNA_m5C:0.999536712157814 36406 chrX 46918475 46918475 1 + G T STAD 46918487 + 46918467 46918507 41 AATGCAAAGGTGATTAGAAACTTCCAAGGATGACCCAACCT AATGCAAATGTGATTAGAAACTTCCAAGGATGACCCAACCT < 41bp 1 0.210897268617413 1 0.182652920484543 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient JADE3 ENSG00000102221 CDS Human protein_coding chrX:46918487 chrX:46918475 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_36817 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_36406 DeepMRMD:1;iRNA_m5C:0.999536712157815 36407 chr19 1043781 1043781 1 + A G STAD 1043784 + 1043764 1043804 41 TCCGGGAGGTGTGGGAGATGCTGGGACCCCGGATCTTCACC TCCGGGAGGTGTGGGAGGTGCTGGGACCCCGGATCTTCACC < 41bp 1 0.682794986227311 1 0.801156759262085 experiment 0.634410027545377 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1043784 chr19:1043781 nonsynonymous SNV 0.056 1 18 hm5C_associated_SNPs_36818 0 0 1 0 2 Endoplasmic reticulum 1 0.500232153774891 0.39768648147583 0.999535692450219 hm5C_site_36407 DeepMRMD:0.39768648147583;iRNA_m5C:0.999535692450219 36408 chr22 29533623 29533623 1 + C T STAD 29533628 + 29533608 29533648 41 TATTTCTTCTCTGATCGCATCAATCAGGCCCAGGGATTTGC TATTTCTTCTCTGATTGCATCAATCAGGCCCAGGGATTTGC < 41bp 1 0.0328666881470819 1 0.0886226892471313 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29533628 chr22:29533623 nonsynonymous SNV 0.995 3 16 hm5C_associated_SNPs_36819 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643912715 1 0.99953671217457 hm5C_site_36408 DeepMRMD:1;iRNA_m5C:0.99953671217457 36409 chr7 127342555 127342555 1 + T C STAD 127342535 + 127342515 127342555 41 AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGC < 41bp 1 0.0514586289259078 1 0.181334525346756 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127342535 chr7:127342555 nonsynonymous SNV 0.844 1 41 hm5C_associated_SNPs_36820 0 0 1 0 2 Cytosol 1 0.500231643921094 1 0.999536712157811 hm5C_site_36409 DeepMRMD:1;iRNA_m5C:0.999536712157811 36410 chr10 17276790 17276790 1 + C A STAD 17276805 + 17276785 17276825 41 CTCACCTGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC CTCACATGTGAAGTGGATGCCCTTAAAGGAACCGTGAGTAC < 41bp 1 0.156022105096373 1 0.0260064005851746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276805 chr10:17276790 synonymous SNV . 0 6 hm5C_associated_SNPs_36821 0 0 1 0 2 Ribosome 1 0.500231643956731 1 0.999536712086539 hm5C_site_36410 DeepMRMD:1;iRNA_m5C:0.999536712086539 36411 chr1 109772108 109772108 1 + C T STAD 109772124 + 109772104 109772144 41 GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC GGAGTGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC < 41bp 1 0.580368939799791 1 0.815507650375366 experiment 0.839262120400418 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772124 chr1:109772108 nonsynonymous SNV 0.676 3 5 hm5C_associated_SNPs_36822 0 0 1 0 2 Ribosome 1 0.500231644381605 0.368984699249268 0.99953671123679 hm5C_site_36411 DeepMRMD:0.368984699249268;iRNA_m5C:0.99953671123679 36412 chr8 36692338 36692338 1 + A T STAD 36692357 + 36692337 36692377 41 AATCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA ATTCCTTTGTGCAGTGATTCCCATGCTGAAGATATTTCCAA < 41bp 1 0.16357547531444 1 0.176072329282761 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36692357 chr8:36692338 nonsynonymous SNV 0.904 2 2 hm5C_associated_SNPs_36823 0 0 0 0 2 unknown 1 0.50023164392109 1 0.999536712157819 hm5C_site_36412 DeepMRMD:1;iRNA_m5C:0.999536712157819 36413 chr12 112229169 112229169 1 + C T STAD 112229155 + 112229135 112229175 41 ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATT ACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCTGCCATT < 41bp 1 0.129692913290302 1 0.0247390568256378 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229155 chr12:112229169 synonymous SNV . 0 35 hm5C_associated_SNPs_36824 0 0 1 0 2 chromatin 1 0.500231643921059 1 0.999536712157882 hm5C_site_36413 DeepMRMD:1;iRNA_m5C:0.999536712157882 36414 chr12 112229169 112229169 1 + C T STAD 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCTGCCATTG < 41bp 1 0.291799333431436 1 0.134031236171722 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229156 chr12:112229169 synonymous SNV . 0 34 hm5C_associated_SNPs_36825 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36414 DeepMRMD:1;iRNA_m5C:0.999536712157815 36415 chr12 112229169 112229169 1 + C T STAD 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCACGGCTGGGGCTGCCATTGCCTCCCATGAGG < 41bp 1 0.388002625627335 1 0.0630034506320953 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229168 chr12:112229169 synonymous SNV . 0 22 hm5C_associated_SNPs_36827 0 0 1 0 2 chromatin 1 0.500231643909709 1 0.999536712180581 hm5C_site_36415 DeepMRMD:1;iRNA_m5C:0.999536712180581 36416 chrX 70674047 70674047 1 + C T STAD 70674049 + 70674029 70674069 41 GTCAGTATACTAAGACTGCCCAGGAGATTGTGAACGTCTGT GTCAGTATACTAAGACTGTCCAGGAGATTGTGAACGTCTGT < 41bp 1 0.576809906321718 1 0.856076836585999 experiment 0.846380187356564 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF1 ENSG00000147133 CDS Human protein_coding chrX:70674049 chrX:70674047 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_36828 0 0 1 0 2 Cytosol 1 0.500227384568113 0.287846326828002 0.999545230863774 hm5C_site_36416 DeepMRMD:0.287846326828002;iRNA_m5C:0.999545230863774 36417 chr9 134354732 134354732 1 + G A STAD 134354717 + 134354697 134354737 41 AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCT AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCATGCCT < 41bp 1 0.310168946124896 1 0.805463552474976 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354717 chr9:134354732 nonsynonymous SNV 0.192 0 36 hm5C_associated_SNPs_36829 0 0 1 0 1 Nucleus 1 0.500231643921091 0.389072895050048 0.999536712157818 hm5C_site_36417 DeepMRMD:0.389072895050048;iRNA_m5C:0.999536712157818 36418 chr9 134354732 134354732 1 + G A STAD 134354743 + 134354723 134354763 41 GACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG GACGTGACCATGCCTGGCAGCAGCCTGGGCACTGAGATCTG < 41bp 1 0.232314845997431 1 0.317133665084839 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354743 chr9:134354732 nonsynonymous SNV 0.192 0 10 hm5C_associated_SNPs_36830 0 0 1 0 1 Nucleus 1 0.500231653107277 1 0.999536693785447 hm5C_site_36418 DeepMRMD:1;iRNA_m5C:0.999536693785447 36419 chr12 69044223 69044223 1 + C A STAD 69044226 + 69044206 69044246 41 TGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAA TGTAGAAAAATACGATCATACGATAGAAGATTCTTATAGAA < 41bp 1 0.561526781120687 1 0.371053576469421 experiment 0.876946437758625 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044226 chr12:69044223 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_36831 0 0 0 0 2 Ribosome 1 0.50023164424135 1 0.9995367115173 hm5C_site_36419 DeepMRMD:1;iRNA_m5C:0.9995367115173 36420 chr7 135291543 135291543 1 + A G STAD 135291549 + 135291529 135291569 41 TTCGTCATGAAACAAGAATCCACATCTTGAATCTTCTCATT TTCGTCATGAAACAGGAATCCACATCTTGAATCTTCTCATT < 41bp 1 0.216162007637552 1 0.0667721927165985 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291549 chr7:135291543 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_36833 0 0 1 0 1 Cytosol 1 0.500231643899116 1 0.999536712201768 hm5C_site_36420 DeepMRMD:1;iRNA_m5C:0.999536712201768 36421 chr1 27089594 27089594 1 + T G STAD 27089608 + 27089588 27089628 41 ACCTTATGGCACACTCCCTCCAGGGAGGATGAGTCACGCCT ACCTTAGGGCACACTCCCTCCAGGGAGGATGAGTCACGCCT < 41bp 1 0.698701491398894 1 0.931355714797974 experiment 0.602597017202212 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27089608 chr1:27089594 stopgain 0.976 1 7 hm5C_associated_SNPs_36834 0 0 1 0 0 Nucleus 1 0.500231643921092 0.137288570404052 0.999536712157815 hm5C_site_36421 DeepMRMD:0.137288570404052;iRNA_m5C:0.999536712157815 36422 chr15 40259735 40259735 1 + G A STAD 40259728 + 40259708 40259748 41 CAGGCCCCATCCCTGTGCATCAGCTTCGCAGGTACACAGCT CAGGCCCCATCCCTGTGCATCAGCTTCACAGGTACACAGCT < 41bp 1 0.290672032374935 1 0.54388439655304 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40259728 chr15:40259735 nonsynonymous SNV 0.922 3 28 hm5C_associated_SNPs_36835 0 0 1 0 0 Ribosome 1 0.500231643921093 0.91223120689392 0.999536712157814 hm5C_site_36422 DeepMRMD:0.91223120689392;iRNA_m5C:0.999536712157814 36423 chr17 8172066 8172066 1 + G T STAD 8172060 + 8172040 8172080 41 GCCTTCTGCTACGCCACAACCTGTCTGGGCGCTACGAGTCT GCCTTCTGCTACGCCACAACCTGTCTTGGCGCTACGAGTCT < 41bp 1 0.326870502107238 1 0.0533204078674316 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFAS ENSG00000178921 CDS Human protein_coding chr17:8172060 chr17:8172066 nonsynonymous SNV 0.234 4 27 hm5C_associated_SNPs_36837 0 0 1 0 0 Nucleus 1 0.500231697133136 1 0.999536605733728 hm5C_site_36423 DeepMRMD:1;iRNA_m5C:0.999536605733728 36424 chr5 121786608 121786608 1 + A C STAD 121786604 + 121786584 121786624 41 ACTCCAACAACTCTGAGGACCCCAAGACTACCCCAGTGAGG ACTCCAACAACTCTGAGGACCCCACGACTACCCCAGTGAGG < 41bp 1 0.127405088191082 1 0.441494107246399 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786604 chr5:121786608 nonsynonymous SNV 0.883 4 25 hm5C_associated_SNPs_36839 0 0 0 0 0 exosome 1 0.500231743992389 1 0.999536512015222 hm5C_site_36424 DeepMRMD:1;iRNA_m5C:0.999536512015222 36425 chr12 22208520 22208520 1 + C T STAD 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TCTCTGTTGTGAGACGCCATCAGTTTTGATGGAGTGAAATT < 41bp 1 0.436453934841817 1 0.250121146440506 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208520 stopgain 1.000 1 27 hm5C_associated_SNPs_36840 0 0 0 0 1 Ribosome 1 0.500231644140293 1 0.999536711719414 hm5C_site_36425 DeepMRMD:1;iRNA_m5C:0.999536711719414 36426 chr19 39390817 39390817 1 + C G STAD 39390816 + 39390796 39390836 41 CCGGGGCTGTCGTGGGCTCCCCTCGTCTTCGGCTACGTCAC CCGGGGCTGTCGTGGGCTCCCGTCGTCTTCGGCTACGTCAC < 41bp 1 0.583598870735993 1 0.360470741987228 experiment 0.832802258528013 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39390816 chr19:39390817 nonsynonymous SNV 0.982 1 22 hm5C_associated_SNPs_36841 0 0 1 0 1 Ribosome 1 0.5002316439211 1 0.9995367121578 hm5C_site_36426 DeepMRMD:1;iRNA_m5C:0.9995367121578 36427 chr12 56214131 56214131 1 + G C STAD 56214120 + 56214100 56214140 41 CAGCCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAG CAGCCTCATTGCTAAGTGTACTGCTGCCGAACTTGCCCCAG < 41bp 1 0.683597328524526 1 0.248014628887177 experiment 0.632805342950948 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human other chr12:56214120 chr12:56214131 nonsynonymous SNV 0.990 2 32 hm5C_associated_SNPs_36842 0 0 1 0 1 Ribosome 1 0.500231643974289 1 0.999536712051422 hm5C_site_36427 DeepMRMD:1;iRNA_m5C:0.999536712051422 36428 chr12 56214131 56214131 1 + G C STAD 56214123 + 56214103 56214143 41 CCTCATTGCTAAGTGTACTGCTGCCGAAGTTGCCCCAGTTC CCTCATTGCTAAGTGTACTGCTGCCGAACTTGCCCCAGTTC < 41bp 1 0.583282169435409 1 0.298034608364105 experiment 0.833435661129181 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ORMDL2 ENSG00000123353;ENSG00000257390 CDS Human other chr12:56214123 chr12:56214131 nonsynonymous SNV 0.990 2 29 hm5C_associated_SNPs_36843 0 0 1 0 1 Ribosome 1 0.500230117913497 1 0.999539764173006 hm5C_site_36428 DeepMRMD:1;iRNA_m5C:0.999539764173006 36429 chr20 49576176 49576176 1 + G T STAD 49576184 + 49576164 49576204 41 AAATCGCTGCGGGTCTGGGCCCCTCTTACAGTGGCAGCTTG AAATCGCTGCGGTTCTGGGCCCCTCTTACAGTGGCAGCTTG < 41bp 1 0.117729024833013 1 0.0851042568683624 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOCS3 ENSG00000124217 CDS Human protein_coding chr20:49576184 chr20:49576176 nonsynonymous SNV 0.204 2 13 hm5C_associated_SNPs_36845 0 0 1 0 0 Nucleus 1 0.500231644829642 1 0.999536710340716 hm5C_site_36429 DeepMRMD:1;iRNA_m5C:0.999536710340716 36430 chr16 85691162 85691162 1 + G A STAD 85691160 + 85691140 85691180 41 GAGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGA GAGCAGCACCTGGATATGGGCCAGCCCCCGGTGCCGGCGGA < 41bp 1 0.229843043806994 1 0.352977961301804 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691160 chr16:85691162 nonsynonymous SNV 0.943 4 23 hm5C_associated_SNPs_36846 0 0 1 0 1 Cytosol 1 0.500231643922325 1 0.99953671215535 hm5C_site_36430 DeepMRMD:1;iRNA_m5C:0.99953671215535 36431 chr16 85691162 85691162 1 + G A STAD 85691161 + 85691141 85691181 41 AGCAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGAG AGCAGCACCTGGATATGGGCCAGCCCCCGGTGCCGGCGGAG < 41bp 1 0.296699997280951 1 0.27364307641983 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691161 chr16:85691162 nonsynonymous SNV 0.943 4 22 hm5C_associated_SNPs_36847 0 0 1 0 1 Cytosol 1 0.500280980797546 1 0.999438038404909 hm5C_site_36431 DeepMRMD:1;iRNA_m5C:0.999438038404909 36432 chr16 85691162 85691162 1 + G A STAD 85691167 + 85691147 85691187 41 ACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGAGGCAGAG ACCTGGATATGGGCCAGCCCCCGGTGCCGGCGGAGGCAGAG < 41bp 1 0.509466948000069 1 0.429136097431183 experiment 0.981066103999861 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691167 chr16:85691162 nonsynonymous SNV 0.943 4 16 hm5C_associated_SNPs_36848 0 0 1 0 1 Cytosol 1 0.500231643933875 1 0.99953671213225 hm5C_site_36432 DeepMRMD:1;iRNA_m5C:0.99953671213225 36433 chr16 85691162 85691162 1 + G A STAD 85691173 + 85691153 85691193 41 ATATGGGCCGGCCCCCGGTGCCGGCGGAGGCAGAGCACAGG ATATGGGCCAGCCCCCGGTGCCGGCGGAGGCAGAGCACAGG < 41bp 1 0.21396097948308 1 0.531339347362518 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691173 chr16:85691162 nonsynonymous SNV 0.943 4 10 hm5C_associated_SNPs_36849 0 0 1 0 1 Cytosol 1 0.500231643921381 0.937321305274964 0.999536712157238 hm5C_site_36433 DeepMRMD:0.937321305274964;iRNA_m5C:0.999536712157238 36434 chr3 49053239 49053239 1 + C A STAD 49053242 - 49053222 49053262 41 ACTACAACCGGGTACACATCCTGGGGGTGAGCACACAGCAA ACTACAACCGGGTACACATCCTGTGGGTGAGCACACAGCAA < 41bp 1 0.485316701438356 1 0.516333281993866 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053242 chr3:49053239 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_36851 0 0 0 0 2 chromatin 1 0.500231584164692 0.967333436012268 0.999536831670617 hm5C_site_36434 DeepMRMD:0.967333436012268;iRNA_m5C:0.999536831670617 36435 chr3 49053239 49053239 1 + C A STAD 49053243 - 49053223 49053263 41 TACTACAACCGGGTACACATCCTGGGGGTGAGCACACAGCA TACTACAACCGGGTACACATCCTGTGGGTGAGCACACAGCA < 41bp 1 0.144985802147694 1 0.397264540195465 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053243 chr3:49053239 nonsynonymous SNV 0.978 4 25 hm5C_associated_SNPs_36852 0 0 0 0 2 chromatin 1 0.500768647918091 1 0.998462704163818 hm5C_site_36435 DeepMRMD:1;iRNA_m5C:0.998462704163818 36436 chr3 49053239 49053239 1 + C A STAD 49053246 - 49053226 49053266 41 TCCTACTACAACCGGGTACACATCCTGGGGGTGAGCACACA TCCTACTACAACCGGGTACACATCCTGTGGGTGAGCACACA < 41bp 1 0.101931448128041 1 0.104578495025635 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053246 chr3:49053239 nonsynonymous SNV 0.978 4 28 hm5C_associated_SNPs_36853 0 0 0 0 2 chromatin 1 0.500231643777867 1 0.999536712444266 hm5C_site_36436 DeepMRMD:1;iRNA_m5C:0.999536712444266 36437 chr3 49053239 49053239 1 + C A STAD 49053248 - 49053228 49053268 41 GCTCCTACTACAACCGGGTACACATCCTGGGGGTGAGCACA GCTCCTACTACAACCGGGTACACATCCTGTGGGTGAGCACA < 41bp 1 0.0947269032952517 1 0.102908790111542 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control DALRD3 ENSG00000178149 CDS Human protein_coding chr3:49053248 chr3:49053239 nonsynonymous SNV 0.978 4 30 hm5C_associated_SNPs_36854 0 0 0 0 2 chromatin 1 0.500231643935886 1 0.999536712128228 hm5C_site_36437 DeepMRMD:1;iRNA_m5C:0.999536712128228 36438 chr20 23350271 23350271 1 + A G STAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCGACGCCCTCCAGCGCCACCGCCGCATCCA < 41bp 1 0.558667776240204 1 0.740210831165314 experiment 0.882664447519592 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350271 nonsynonymous SNV 0.991 2 13 hm5C_associated_SNPs_36856 0 0 0 0 1 Cytosol 1 0.50023164392016 0.519578337669372 0.999536712159681 hm5C_site_36438 DeepMRMD:0.519578337669372;iRNA_m5C:0.999536712159681 36439 chrX 48759692 48759692 1 + C T STAD 48759703 + 48759683 48759723 41 GACAGGGAACGGGATCGGGACCGCGGGTATGACAAGGCAGA GACAGGGAATGGGATCGGGACCGCGGGTATGACAAGGCAGA < 41bp 1 0.476536660502594 1 0.126916766166687 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759703 chrX:48759692 nonsynonymous SNV 0.992 4 10 hm5C_associated_SNPs_36857 0 0 1 0 0 Ribosome 1 0.500231643922823 1 0.999536712154353 hm5C_site_36439 DeepMRMD:1;iRNA_m5C:0.999536712154353 36440 chr15 91492615 91492615 1 + T A STAD 91492607 + 91492587 91492627 41 GGCAGCGGGTGTGGTGTCGGCCATGGTGTGCATGGTGAAGA GGCAGCGGGTGTGGTGTCGGCCATGGTGAGCATGGTGAAGA < 41bp 1 0.27846471455777 1 0.407841920852661 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC45A ENSG00000140553 CDS Human protein_coding chr15:91492607 chr15:91492615 nonsynonymous SNV 0.925 3 29 hm5C_associated_SNPs_36859 0 0 1 0 2 Nucleus 1 0.500231643833022 1 0.999536712333957 hm5C_site_36440 DeepMRMD:1;iRNA_m5C:0.999536712333957 36441 chr15 91492615 91492615 1 + T A STAD 91492608 + 91492588 91492628 41 GCAGCGGGTGTGGTGTCGGCCATGGTGTGCATGGTGAAGAC GCAGCGGGTGTGGTGTCGGCCATGGTGAGCATGGTGAAGAC < 41bp 1 0.686204969488046 1 0.368232280015945 experiment 0.627590061023907 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UNC45A ENSG00000140553 CDS Human protein_coding chr15:91492608 chr15:91492615 nonsynonymous SNV 0.925 3 28 hm5C_associated_SNPs_36860 0 0 1 0 2 Nucleus 1 0.500231644373907 1 0.999536711252187 hm5C_site_36441 DeepMRMD:1;iRNA_m5C:0.999536711252187 36442 chr19 57910652 57910652 1 + G A STAD 57910662 + 57910642 57910682 41 AGTTCACACCGGAGAAAGACCTTATAAGTGCAATGATTGTG AGTTCACACCAGAGAAAGACCTTATAAGTGCAATGATTGTG < 41bp 1 0.0982730050852455 1 0.0929780602455139 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF548 ENSG00000188785 CDS Human protein_coding chr19:57910662 chr19:57910652 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_36861 0 0 0 0 0 Nucleus 1 0.500231171778601 1 0.999537656442798 hm5C_site_36442 DeepMRMD:1;iRNA_m5C:0.999537656442798 36443 chrX 129629795 129629795 1 + C T STAD 129629789 + 129629769 129629809 41 CTTCACTCTTACGTGCACCTCAACGCCGATGAGCTGGAAGC CTTCACTCTTACGTGCACCTCAACGCTGATGAGCTGGAAGC < 41bp 1 0.638372222071859 1 0.193936258554459 experiment 0.723255555856281 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM45BP ENSG00000221930 ncRNA_exonic Human transcribed_processed_pseudogene chrX:129629789 chrX:129629795 . . 0 27 hm5C_associated_SNPs_36862 0 0 0 0 0 unknown 1 0.500231641451338 1 0.999536717097324 hm5C_site_36443 DeepMRMD:1;iRNA_m5C:0.999536717097324 36444 chr4 53579527 53579527 1 + G C STAD 53579508 + 53579488 53579528 41 AGAGAAGAGACTGGAAAGCTCCTCTTTGGATCCTGTCTGGA AGAGAAGAGACTGGAAAGCTCCTCTTTGGATCCTGTCTGCA < 41bp 1 0.0846827187924015 1 0.042996734380722 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579508 chr4:53579527 . . 0 40 hm5C_associated_SNPs_36863 0 0 1 1 0 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_36444 DeepMRMD:1;iRNA_m5C:0.999536712157812 36445 chr4 53579527 53579527 1 + G C STAD 53579509 + 53579489 53579529 41 GAGAAGAGACTGGAAAGCTCCTCTTTGGATCCTGTCTGGAG GAGAAGAGACTGGAAAGCTCCTCTTTGGATCCTGTCTGCAG < 41bp 1 0.260351012357107 1 0.130088567733765 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579509 chr4:53579527 . . 0 39 hm5C_associated_SNPs_36864 0 0 1 1 0 unknown 1 0.500217126408202 1 0.999565747183596 hm5C_site_36445 DeepMRMD:1;iRNA_m5C:0.999565747183596 36446 chr4 53579527 53579527 1 + G C STAD 53579519 + 53579499 53579539 41 TGGAAAGCTCCTCTTTGGATCCTGTCTGGAGTCACAACTGA TGGAAAGCTCCTCTTTGGATCCTGTCTGCAGTCACAACTGA < 41bp 1 0.073943721638046 1 0.198455214500427 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579519 chr4:53579527 . . 0 29 hm5C_associated_SNPs_36865 0 0 1 1 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_36446 DeepMRMD:1;iRNA_m5C:0.999536712157815 36447 chr4 53579527 53579527 1 + G C STAD 53579520 + 53579500 53579540 41 GGAAAGCTCCTCTTTGGATCCTGTCTGGAGTCACAACTGAA GGAAAGCTCCTCTTTGGATCCTGTCTGCAGTCACAACTGAA < 41bp 1 0.0982159299131185 1 0.0695280730724335 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579520 chr4:53579527 . . 0 28 hm5C_associated_SNPs_36866 0 0 1 1 0 unknown 1 0.500231641967272 1 0.999536716065457 hm5C_site_36447 DeepMRMD:1;iRNA_m5C:0.999536716065457 36448 chr4 53579527 53579527 1 + G C STAD 53579531 + 53579511 53579551 41 CTTTGGATCCTGTCTGGAGTCACAACTGAACCAGAAAAAGT CTTTGGATCCTGTCTGCAGTCACAACTGAACCAGAAAAAGT < 41bp 1 0.53910391307555 1 0.549319505691528 experiment 0.921792173848901 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579531 chr4:53579527 . . 0 17 hm5C_associated_SNPs_36867 0 0 1 1 0 unknown 1 0.500231643925351 0.901360988616944 0.999536712149298 hm5C_site_36448 DeepMRMD:0.901360988616944;iRNA_m5C:0.999536712149298 36449 chr4 53579527 53579527 1 + G C STAD 53579536 + 53579516 53579556 41 GATCCTGTCTGGAGTCACAACTGAACCAGAAAAAGTTTCGT GATCCTGTCTGCAGTCACAACTGAACCAGAAAAAGTTTCGT < 41bp 1 0.472462409511551 1 0.619613289833069 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579536 chr4:53579527 . . 0 12 hm5C_associated_SNPs_36868 0 0 1 1 0 unknown 1 0.500231657123274 0.760773420333862 0.999536685753451 hm5C_site_36449 DeepMRMD:0.760773420333862;iRNA_m5C:0.999536685753451 36450 chr11 121495981 121495981 1 + G C STAD 121495977 + 121495957 121495997 41 CCATCCTGCTGTACGATGAGCTGGGGTCTGGTGAGTTGCGA CCATCCTGCTGTACGATGAGCTGGCGTCTGGTGAGTTGCGA < 41bp 1 0.232803917005116 1 0.410730004310608 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SORL1 ENSG00000137642 CDS Human protein_coding chr11:121495977 chr11:121495981 nonsynonymous SNV 0.836 1 25 hm5C_associated_SNPs_36869 0 0 1 0 1 Nucleus 1 0.500231643967539 1 0.999536712064922 hm5C_site_36450 DeepMRMD:1;iRNA_m5C:0.999536712064922 36451 chr10 17276730 17276730 1 + C T STAD 17276740 + 17276720 17276760 41 GGAACAATGACGCCCTGCGCCAGGCAAAGCAGGAGTCCACT GGAACAATGATGCCCTGCGCCAGGCAAAGCAGGAGTCCACT < 41bp 1 0.478053762394086 1 0.750745415687561 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17276740 chr10:17276730 synonymous SNV . 0 11 hm5C_associated_SNPs_36871 0 0 1 0 2 Ribosome 1 0.500225432009828 0.498509168624878 0.999549135980343 hm5C_site_36451 DeepMRMD:0.498509168624878;iRNA_m5C:0.999549135980343 36452 chr5 14359545 14359545 1 + G A STAD 14359530 + 14359510 14359550 41 TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACAAGGCG < 41bp 1 0.319552550140467 1 0.502311944961548 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359530 chr5:14359545 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_36872 0 0 1 0 2 Nucleus 1 0.500231628382769 0.995376110076904 0.999536743234462 hm5C_site_36452 DeepMRMD:0.995376110076904;iRNA_m5C:0.999536743234462 36453 chr5 14359545 14359545 1 + G A STAD 14359551 + 14359531 14359571 41 TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTC TGCAGCAGCTGGACAAGGCGCAGTCGCAGATGGAGGAGCTC < 41bp 1 0.0580766545185817 1 0.15431135892868 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359551 chr5:14359545 nonsynonymous SNV 0.999 3 15 hm5C_associated_SNPs_36873 0 0 1 0 2 Nucleus 1 0.500231644136405 1 0.999536711727191 hm5C_site_36453 DeepMRMD:1;iRNA_m5C:0.999536711727191 36454 chr5 14359545 14359545 1 + G A STAD 14359555 + 14359535 14359575 41 GCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTCTTCC GCAGCTGGACAAGGCGCAGTCGCAGATGGAGGAGCTCTTCC < 41bp 1 0.569890157944605 1 0.853487133979797 experiment 0.860219684110791 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359555 chr5:14359545 nonsynonymous SNV 0.999 3 11 hm5C_associated_SNPs_36874 0 0 1 0 2 Nucleus 1 0.500231643921265 0.293025732040406 0.999536712157471 hm5C_site_36454 DeepMRMD:0.293025732040406;iRNA_m5C:0.999536712157471 36455 chr4 114161712 114161712 1 + G A STAD 114161710 + 114161690 114161730 41 TGGCAACTCTTCTTCTAAACCGGGGAGCTGCTGTGGACTTC TGGCAACTCTTCTTCTAAACCGAGGAGCTGCTGTGGACTTC < 41bp 1 0.547538057020074 1 0.829468190670013 experiment 0.904923885959852 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ANK2 ENSG00000145362 CDS Human protein_coding chr4:114161710 chr4:114161712 synonymous SNV . 0 23 hm5C_associated_SNPs_36875 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921085 0.341063618659974 0.99953671215783 hm5C_site_36455 DeepMRMD:0.341063618659974;iRNA_m5C:0.99953671215783 36456 chr6 31594956 31594956 1 + G T STAD 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGTCCC < 41bp 1 0.286898695387093 1 0.0903161466121674 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594956 nonsynonymous SNV 0.969 4 38 hm5C_associated_SNPs_36876 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_36456 DeepMRMD:1;iRNA_m5C:0.999536712157815 36457 chr6 31594956 31594956 1 + G T STAD 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGTCCCC < 41bp 1 0.26321927472375 1 0.0894670188426971 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594956 nonsynonymous SNV 0.969 4 37 hm5C_associated_SNPs_36877 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36457 DeepMRMD:1;iRNA_m5C:0.999536712157815 36458 chr6 31594956 31594956 1 + G T STAD 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGTCCCCC < 41bp 1 0.31826323713161 1 0.134056210517883 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594956 nonsynonymous SNV 0.969 4 36 hm5C_associated_SNPs_36878 0 0 1 0 1 Ribosome 1 0.500231646105001 1 0.999536707789997 hm5C_site_36458 DeepMRMD:1;iRNA_m5C:0.999536707789997 36459 chr6 31594956 31594956 1 + G T STAD 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGTCCCCCC < 41bp 1 0.584399526230048 1 0.625944316387177 experiment 0.831200947539904 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594956 nonsynonymous SNV 0.969 4 35 hm5C_associated_SNPs_36879 0 0 1 0 1 Ribosome 1 0.500231643921092 0.748111367225646 0.999536712157815 hm5C_site_36459 DeepMRMD:0.748111367225646;iRNA_m5C:0.999536712157815 36460 chr6 31594956 31594956 1 + G T STAD 31594957 + 31594937 31594977 41 GGCCCCGCCGGGAACTGGGGCCCCCCTGGGGACTACCCAGT GGCCCCGCCGGGAACTGGGTCCCCCCTGGGGACTACCCAGT < 41bp 1 0.251670105450499 1 0.0429392457008362 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594957 chr6:31594956 nonsynonymous SNV 0.969 4 20 hm5C_associated_SNPs_36880 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36460 DeepMRMD:1;iRNA_m5C:0.999536712157815 36461 chr6 31594956 31594956 1 + G T STAD 31594958 + 31594938 31594978 41 GCCCCGCCGGGAACTGGGGCCCCCCTGGGGACTACCCAGTG GCCCCGCCGGGAACTGGGTCCCCCCTGGGGACTACCCAGTG < 41bp 1 0.271217077260631 1 0.255046606063843 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594958 chr6:31594956 nonsynonymous SNV 0.969 4 19 hm5C_associated_SNPs_36881 0 0 1 0 1 Ribosome 1 0.500231538464638 1 0.999536923070725 hm5C_site_36461 DeepMRMD:1;iRNA_m5C:0.999536923070725 36462 chr6 31594956 31594956 1 + G T STAD 31594959 + 31594939 31594979 41 CCCCGCCGGGAACTGGGGCCCCCCTGGGGACTACCCAGTGA CCCCGCCGGGAACTGGGTCCCCCCTGGGGACTACCCAGTGA < 41bp 1 0.376823095317178 1 0.128459751605988 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594959 chr6:31594956 nonsynonymous SNV 0.969 4 18 hm5C_associated_SNPs_36882 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36462 DeepMRMD:1;iRNA_m5C:0.999536712157815 36463 chr6 31594956 31594956 1 + G T STAD 31594960 + 31594940 31594980 41 CCCGCCGGGAACTGGGGCCCCCCTGGGGACTACCCAGTGAG CCCGCCGGGAACTGGGTCCCCCCTGGGGACTACCCAGTGAG < 41bp 1 0.374590152979697 1 0.361474633216858 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594960 chr6:31594956 nonsynonymous SNV 0.969 4 17 hm5C_associated_SNPs_36883 0 0 1 0 1 Ribosome 1 0.500559056677626 1 0.998881886644747 hm5C_site_36463 DeepMRMD:1;iRNA_m5C:0.998881886644747 36464 chr12 104492124 104492124 1 + G A STAD 104492140 + 104492120 104492160 41 GAAAGAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG GAAAAAGACTCCTTCAAATCCAGTGGCCACAGTGAAAGCGG < 41bp 1 0.485070920255998 1 0.516948223114014 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104492140 chr12:104492124 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_36884 0 0 0 0 1 Cytosol 1 0.500231643918839 0.966103553771972 0.999536712162321 hm5C_site_36464 DeepMRMD:0.966103553771972;iRNA_m5C:0.999536712162321 36465 chr17 48562190 48562190 1 + C T STAD 48562204 + 48562184 48562224 41 TGGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACA TGGCAGTAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACA < 41bp 1 0.12303162568083 1 0.267500996589661 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562204 chr17:48562190 stopgain 0.841 0 7 hm5C_associated_SNPs_36885 0 0 0 0 1 Ribosome 1 0.5002316439211 1 0.999536712157801 hm5C_site_36465 DeepMRMD:1;iRNA_m5C:0.999536712157801 36466 chr17 48562190 48562190 1 + C T STAD 48562205 + 48562185 48562225 41 GGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACAA GGCAGTAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACAA < 41bp 1 0.171144394633081 1 0.319778144359589 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562205 chr17:48562190 stopgain 0.841 0 6 hm5C_associated_SNPs_36886 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36466 DeepMRMD:1;iRNA_m5C:0.999536712157815 36467 chr14 65009479 65009479 1 + G A STAD 65009465 + 65009445 65009485 41 TTCAGGAGCCTCCGGGGGACCCACCATCGAAGAAGTGGACT TTCAGGAGCCTCCGGGGGACCCACCATCGAAGAAATGGACT < 41bp 1 0.149724130811498 1 0.358812361955643 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65009465 chr14:65009479 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_36887 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36467 DeepMRMD:1;iRNA_m5C:0.999536712157815 36468 chr7 114302139 114302139 1 + T G STAD 114302124 + 114302104 114302144 41 CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCTTAGCC CTTCTGTCTGCTTTAGAATGCAGTACGTCATAATCGTAGCC < 41bp 1 0.238623804380077 1 0.32318526506424 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114302124 chr7:114302139 nonsynonymous SNV 0.998 5 36 hm5C_associated_SNPs_36888 0 0 1 4 1 Cytosol 1 0.500233621541669 1 0.999532756916663 hm5C_site_36468 DeepMRMD:1;iRNA_m5C:0.999532756916663 36469 chr1 180012316 180012316 1 + T G STAD 180012302 + 180012282 180012322 41 TTCCAGACTTTGTGAAACAGCTGAGGACCAGAACTGAAACA TTCCAGACTTTGTGAAACAGCTGAGGACCAGAACGGAAACA < 41bp 1 0.441917634411367 1 0.137040197849274 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180012302 chr1:180012316 synonymous SNV . 0 35 hm5C_associated_SNPs_36889 0 0 1 0 1 Nucleus 1 0.500231643746291 1 0.999536712507418 hm5C_site_36469 DeepMRMD:1;iRNA_m5C:0.999536712507418 36470 chr7 66489946 66489946 1 + C A STAD 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGAGACTAAATTCCATT < 41bp 1 0.418273304551609 1 0.0851066410541534 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489946 nonsynonymous SNV 0.061 0 29 hm5C_associated_SNPs_36890 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644310891 1 0.999536711378218 hm5C_site_36470 DeepMRMD:1;iRNA_m5C:0.999536711378218 36471 chr2 69379379 69379379 1 + C T STAD 69379375 + 69379355 69379395 41 CTGGCTCTCCTCTGGTGGTTCTGGCCCCTCTGCTGCACTGT CTGGCTCTCCTCTGGTGGTTCTGGTCCCTCTGCTGCACTGT < 41bp 1 0.512855861347567 1 0.648356080055237 experiment 0.974288277304867 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69379375 chr2:69379379 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_36892 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643874318 0.703287839889526 0.999536712251364 hm5C_site_36471 DeepMRMD:0.703287839889526;iRNA_m5C:0.999536712251364 36472 chrX 152958731 152958731 1 + C T STAD 152958738 + 152958718 152958758 41 GTGTGGATAGATGCGGGGACCCAGATTTTCTTTTCTTACGC GTGTGGATAGATGTGGGGACCCAGATTTTCTTTTCTTACGC < 41bp 1 0.587735613192765 1 0.263620376586914 experiment 0.824528773614469 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958738 chrX:152958731 nonsynonymous SNV 0.984 4 14 hm5C_associated_SNPs_36893 0 0 1 0 2 Ribosome 1 0.500231643925795 1 0.99953671214841 hm5C_site_36472 DeepMRMD:1;iRNA_m5C:0.99953671214841 36473 chr9 74817550 74817550 1 + A G STAD 74817563 + 74817543 74817583 41 TTGCTGGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTG TTGCTGGGAGTAGCATAGACCTGCCACTCTTGGAGTGGCTG < 41bp 1 0.294123422277343 1 0.078850120306015 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GDA ENSG00000119125 CDS Human protein_coding chr9:74817563 chr9:74817550 synonymous SNV . 0 8 hm5C_associated_SNPs_36894 0 0 0 0 1 Cytosol 1 0.500231643921075 1 0.999536712157851 hm5C_site_36473 DeepMRMD:1;iRNA_m5C:0.999536712157851 36474 chr3 183435470 183435470 1 + T C STAD 183435490 + 183435470 183435510 41 TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG CATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG < 41bp 1 0.0550548873454959 1 0.0755000412464142 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435490 chr3:183435470 synonymous SNV . 0 1 hm5C_associated_SNPs_36895 0 0 1 0 2 Nucleus 1 0.500231688836238 1 0.999536622327524 hm5C_site_36474 DeepMRMD:1;iRNA_m5C:0.999536622327524 36475 chr6 139487472 139487472 1 + T C STAD 139487463 + 139487443 139487483 41 GATCTGCAGCTTCGGTAGGCCGGTGGACCTGGAGAAGGACG GATCTGCAGCTTCGGTAGGCCGGTGGACCCGGAGAAGGACG < 41bp 1 0.607476083986527 1 0.579801857471466 experiment 0.785047832026947 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECA ENSG00000112406 CDS Human protein_coding chr6:139487463 chr6:139487472 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_36896 0 0 1 0 1 Ribosome 1 0.500230075245617 0.840396285057068 0.999539849508766 hm5C_site_36475 DeepMRMD:0.840396285057068;iRNA_m5C:0.999539849508766 36476 chr12 7043403 7043403 1 + G A STAD 7043404 + 7043384 7043424 41 GAAGAACTGAGATCGAGGGGCCGGGCCTCCCCTGGAGGGGT GAAGAACTGAGATCGAGGGACCGGGCCTCCCCTGGAGGGGT < 41bp 1 0.311884117106932 1 0.571965873241425 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ATN1 ENSG00000111676 CDS Human protein_coding chr12:7043404 chr12:7043403 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_36897 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921096 0.85606825351715 0.999536712157809 hm5C_site_36476 DeepMRMD:0.85606825351715;iRNA_m5C:0.999536712157809 36477 chr1 215785250 215785250 1 + T C STAD 215785244 + 215785224 215785264 41 CCAACAAACTATTTGTAAGACTCTCATCGACTGGAAAAAGG CCAACAAACTATTTGTAAGACTCTCACCGACTGGAAAAAGG < 41bp 1 0.0946874041305421 1 0.0385651588439941 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215785244 chr1:215785250 nonsynonymous SNV 0.983 4 27 hm5C_associated_SNPs_36898 0 0 1 0 2 Ribosome 1 0.500231643912013 1 0.999536712175974 hm5C_site_36477 DeepMRMD:1;iRNA_m5C:0.999536712175974 36478 chr12 6637435 6637435 1 + G A STAD 6637450 + 6637430 6637470 41 ACTGGGGATCTGGCCATCCGCTTTCCCAATCTGGTGGACCC ACTGGAGATCTGGCCATCCGCTTTCCCAATCTGGTGGACCC < 41bp 1 0.0951994807566923 1 0.0820887088775635 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6637450 chr12:6637435 synonymous SNV . 0 6 hm5C_associated_SNPs_36899 0 0 1 0 1 Nucleus 1 0.50023439724274 1 0.99953120551452 hm5C_site_36478 DeepMRMD:1;iRNA_m5C:0.99953120551452 36479 chr19 5691598 5691598 1 + C T STAD 5691613 + 5691593 5691633 41 ACTGGCCGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGAG ACTGGTCGCCATGAGGAAAGCTGCTGCCAAGAAAGACTGAG < 41bp 1 0.657235421292023 1 0.506915509700775 experiment 0.685529157415955 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691613 chr19:5691598 nonsynonymous SNV 0.013 0 6 hm5C_associated_SNPs_36900 0 0 1 0 1 Ribosome 1 0.500231664102628 0.98616898059845 0.999536671794744 hm5C_site_36479 DeepMRMD:0.98616898059845;iRNA_m5C:0.999536671794744 36480 chr7 73731916 73731916 1 + G A STAD 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGAGGAAGCA < 41bp 1 0.231090251207745 1 0.214419484138489 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731916 nonsynonymous SNV 0.994 1 34 hm5C_associated_SNPs_36901 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36480 DeepMRMD:1;iRNA_m5C:0.999536712157815 36481 chr7 73731916 73731916 1 + G A STAD 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGAGGAAGCAC < 41bp 1 0.40775841346367 1 0.333514004945755 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731916 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_36902 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_36481 DeepMRMD:1;iRNA_m5C:0.999536712157815 36482 chr7 73731916 73731916 1 + G A STAD 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGAGGAAGCACT < 41bp 1 0.169031792888759 1 0.459985196590424 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731916 nonsynonymous SNV 0.994 1 32 hm5C_associated_SNPs_36903 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36482 DeepMRMD:1;iRNA_m5C:0.999536712157815 36483 chr7 73731916 73731916 1 + G A STAD 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGAGGAAGCACTC < 41bp 1 0.423875755385121 1 0.435987412929535 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731916 nonsynonymous SNV 0.994 1 31 hm5C_associated_SNPs_36904 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36483 DeepMRMD:1;iRNA_m5C:0.999536712157815 36484 chr17 39974715 39974715 1 + G A STAD 39974698 + 39974678 39974718 41 GGCTGATCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGT GGCTGATCAAGGGCATGGACCAGGGGCTGCTGGGCATATGT < 41bp 1 0.691467264591835 1 0.928051352500916 experiment 0.61706547081633 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974698 chr17:39974715 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_36906 0 0 1 0 2 Nucleus 1 0.500231643921051 0.143897294998168 0.999536712157899 hm5C_site_36484 DeepMRMD:0.143897294998168;iRNA_m5C:0.999536712157899 36485 chr17 39974715 39974715 1 + G A STAD 39974704 + 39974684 39974724 41 TCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGTCCTGGA TCAAGGGCATGGACCAGGGGCTGCTGGGCATATGTCCTGGA < 41bp 1 0.28335160049538 1 0.0389918386936188 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974704 chr17:39974715 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_36907 0 0 1 0 2 Nucleus 1 0.500237851695028 1 0.999524296609943 hm5C_site_36485 DeepMRMD:1;iRNA_m5C:0.999524296609943 36486 chr17 39974715 39974715 1 + G A STAD 39974712 + 39974692 39974732 41 ATGGACCAGGGGCTGCTGGGCATGTGTCCTGGAGAGAGAAG ATGGACCAGGGGCTGCTGGGCATATGTCCTGGAGAGAGAAG < 41bp 1 0.103089754419769 1 0.319764792919159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974712 chr17:39974715 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_36908 0 0 1 0 2 Nucleus 1 0.500231707660869 1 0.999536584678262 hm5C_site_36486 DeepMRMD:1;iRNA_m5C:0.999536584678262 36487 chr1 26135604 26135604 1 + A G STAD 26135615 + 26135595 26135635 41 GCCTGCCTGACTGCCATCAGCGACTTCTACTACACTGTGAT GCCTGCCTGGCTGCCATCAGCGACTTCTACTACACTGTGAT < 41bp 1 0.29019246976883 1 0.237112581729889 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26135615 chr1:26135604 nonsynonymous SNV 0.897 2 10 hm5C_associated_SNPs_36909 0 0 1 0 2 unknown 1 0.500231643909915 1 0.99953671218017 hm5C_site_36487 DeepMRMD:1;iRNA_m5C:0.99953671218017 36488 chr14 72152235 72152235 1 + T A STAD 72152244 + 72152224 72152264 41 CAGGTGCAGAGTCCCATGACCTCGCGGCTGAATGCTGGAAA CAGGTGCAGAGACCCATGACCTCGCGGCTGAATGCTGGAAA < 41bp 1 0.483231133295258 1 0.377058267593384 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152244 chr14:72152235 nonsynonymous SNV 0.995 2 12 hm5C_associated_SNPs_36911 0 0 0 0 0 Nucleus 1 0.500231643920924 1 0.999536712158151 hm5C_site_36488 DeepMRMD:1;iRNA_m5C:0.999536712158151 36489 chr5 121786643 121786643 1 + C T STAD 121786629 + 121786609 121786649 41 GACTACCCCAGTGAGGAAGGCTGACCGACCAAGGCCGCAGC GACTACCCCAGTGAGGAAGGCTGACCGACCAAGGTCGCAGC < 41bp 1 0.374170348135666 1 0.42652839422226 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786629 chr5:121786643 nonsynonymous SNV 0.893 4 35 hm5C_associated_SNPs_36912 0 0 0 0 0 exosome 1 0.500231643036234 1 0.999536713927532 hm5C_site_36489 DeepMRMD:1;iRNA_m5C:0.999536713927532 36490 chr19 58906110 58906110 1 + A G STAD 58906102 + 58906082 58906122 41 GACGAGCTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTC GACGAGCTGGAGCGTGTGGCCAAGTCCAGCCGCTGATTTTC < 41bp 1 0.642355038622187 1 0.415343701839447 experiment 0.715289922755627 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906102 chr19:58906110 nonsynonymous SNV 0.994 4 29 hm5C_associated_SNPs_36914 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36490 DeepMRMD:1;iRNA_m5C:0.999536712157815 36491 chr19 58906110 58906110 1 + A G STAD 58906107 + 58906087 58906127 41 GCTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTCCCAGC GCTGGAGCGTGTGGCCAAGTCCAGCCGCTGATTTTCCCAGC < 41bp 1 0.57210201491081 1 0.521935045719147 experiment 0.85579597017838 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906107 chr19:58906110 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_36915 0 0 1 0 1 Ribosome 1 0.500231644244595 0.956129908561706 0.99953671151081 hm5C_site_36491 DeepMRMD:0.956129908561706;iRNA_m5C:0.99953671151081 36492 chr19 58906110 58906110 1 + A G STAD 58906108 + 58906088 58906128 41 CTGGAGCGTGTGGCCAAGTCCAACCGCTGATTTTCCCAGCT CTGGAGCGTGTGGCCAAGTCCAGCCGCTGATTTTCCCAGCT < 41bp 1 0.544949986332979 1 0.278288215398788 experiment 0.910100027334042 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58906108 chr19:58906110 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_36916 0 0 1 0 1 Ribosome 1 0.500231643697602 1 0.999536712604797 hm5C_site_36492 DeepMRMD:1;iRNA_m5C:0.999536712604797 36493 chr17 18143909 18143909 1 + A G STAD 18143895 + 18143875 18143915 41 GCGCTTGTTTTCTGCAGGGGCCCACCACGGGCCCACCATGT GCGCTTGTTTTCTGCAGGGGCCCACCACGGGCCCGCCATGT < 41bp 1 0.0413192813434238 1 0.123263984918594 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143895 chr17:18143909 nonsynonymous SNV 0.953 4 35 hm5C_associated_SNPs_36917 0 0 1 0 1 Cytosol 1 0.50023164395911 1 0.99953671208178 hm5C_site_36493 DeepMRMD:1;iRNA_m5C:0.99953671208178 36494 chr17 18143909 18143909 1 + A G STAD 18143896 + 18143876 18143916 41 CGCTTGTTTTCTGCAGGGGCCCACCACGGGCCCACCATGTG CGCTTGTTTTCTGCAGGGGCCCACCACGGGCCCGCCATGTG < 41bp 1 0.0527621369963035 1 0.0463764667510986 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143896 chr17:18143909 nonsynonymous SNV 0.953 4 34 hm5C_associated_SNPs_36918 0 0 1 0 1 Cytosol 1 0.500231643920215 1 0.99953671215957 hm5C_site_36494 DeepMRMD:1;iRNA_m5C:0.99953671215957 36495 chr17 18143909 18143909 1 + A G STAD 18143906 + 18143886 18143926 41 CTGCAGGGGCCCACCACGGGCCCACCATGTGGGCTGGCACC CTGCAGGGGCCCACCACGGGCCCGCCATGTGGGCTGGCACC < 41bp 1 0.0992991851231298 1 0.0819941163063049 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143906 chr17:18143909 nonsynonymous SNV 0.953 4 24 hm5C_associated_SNPs_36920 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36495 DeepMRMD:1;iRNA_m5C:0.999536712157815 36496 chr17 18143909 18143909 1 + A G STAD 18143907 + 18143887 18143927 41 TGCAGGGGCCCACCACGGGCCCACCATGTGGGCTGGCACCA TGCAGGGGCCCACCACGGGCCCGCCATGTGGGCTGGCACCA < 41bp 1 0.120156222530993 1 0.119686812162399 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18143907 chr17:18143909 nonsynonymous SNV 0.953 4 23 hm5C_associated_SNPs_36921 0 0 1 0 1 Cytosol 1 0.500231641863172 1 0.999536716273656 hm5C_site_36496 DeepMRMD:1;iRNA_m5C:0.999536716273656 36497 chr1 879321 879321 1 + G A STAD 879305 + 879285 879325 41 CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAG CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGACCAG < 41bp 1 0.517986811247189 1 0.0668306350708008 experiment 0.964026377505621 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879305 chr1:879321 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_36922 0 0 0 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36497 DeepMRMD:1;iRNA_m5C:0.999536712157815 36498 chr1 879321 879321 1 + G A STAD 879306 + 879286 879326 41 AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGC AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGACCAGC < 41bp 1 0.673963930368024 1 0.150428950786591 experiment 0.652072139263952 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879306 chr1:879321 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_36923 0 0 0 0 2 nucleus 1 0.500231643921094 1 0.999536712157813 hm5C_site_36498 DeepMRMD:1;iRNA_m5C:0.999536712157813 36499 chr14 61346478 61346478 1 + T C STAD 61346465 + 61346445 61346485 41 CACTGGCACCTATTCACAAGCTTGAAGAAGCTCTGTATGAA CACTGGCACCTATTCACAAGCTTGAAGAAGCTCCGTATGAA < 41bp 1 0.619394439752875 1 0.526323616504669 experiment 0.761211120494249 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61346465 chr14:61346478 nonsynonymous SNV 0.996 1 34 hm5C_associated_SNPs_36924 0 0 1 0 1 Ribosome 1 0.500231637141237 0.947352766990662 0.999536725717525 hm5C_site_36499 DeepMRMD:0.947352766990662;iRNA_m5C:0.999536725717525 36500 chr2 227729830 227729830 1 + G A STAD 227729840 + 227729820 227729860 41 GAGCTGTGCTGTAGGTTTCTCAGGTAAGGGAGACAAAATTT GAGCTGTGCTATAGGTTTCTCAGGTAAGGGAGACAAAATTT < 41bp 1 0.676010134400929 1 0.493662774562836 experiment 0.647979731198142 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RHBDD1 ENSG00000144468 CDS Human protein_coding chr2:227729840 chr2:227729830 nonsynonymous SNV 0.971 1 11 hm5C_associated_SNPs_36925 0 0 1 0 1 Endoplasmic reticulum 1 0.500229858753377 1 0.999540282493247 hm5C_site_36500 DeepMRMD:1;iRNA_m5C:0.999540282493247 36501 chr7 135333207 135333207 1 + A T STAD 135333200 + 135333180 135333220 41 GAGAATCACTACAAAAGAAACTTCTGGACATTGAAGGATTA GAGAATCACTACAAAAGAAACTTCTGGTCATTGAAGGATTA < 41bp 1 0.0647260782083815 1 0.0927473604679108 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135333200 chr7:135333207 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_36926 0 0 1 1 1 Cytosol 1 0.500231643932203 1 0.999536712135594 hm5C_site_36501 DeepMRMD:1;iRNA_m5C:0.999536712135594 36502 chr11 598394 598394 1 + T A STAD 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG GACTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG < 41bp 1 0.113836743680474 1 0.373584508895874 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598394 nonsynonymous SNV 0.154 3 2 hm5C_associated_SNPs_36927 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36502 DeepMRMD:1;iRNA_m5C:0.999536712157815 36503 chr9 100425241 100425241 1 + A G STAD 100425251 + 100425231 100425271 41 AAAAGGTTTCATGAAGTCTTCAAAACCCTAGCTGAAAGTGA AAAAGGTTTCGTGAAGTCTTCAAAACCCTAGCTGAAAGTGA < 41bp 1 0.274630448154106 1 0.727594912052155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100425251 chr9:100425241 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_36928 0 0 1 0 2 Nucleus 1 0.500231643921092 0.54481017589569 0.999536712157815 hm5C_site_36503 DeepMRMD:0.54481017589569;iRNA_m5C:0.999536712157815 36504 chr5 134130617 134130617 1 + G T STAD 134130604 + 134130584 134130624 41 TATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGG TATGTTTTCAGCTACTTTCCCCAGAGCTATGGATGCTTTGG < 41bp 1 0.666522731660557 1 0.741197645664215 experiment 0.666954536678885 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130604 chr5:134130617 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_36929 0 0 1 0 2 Cytosol 1 0.500231643921092 0.51760470867157 0.999536712157815 hm5C_site_36504 DeepMRMD:0.51760470867157;iRNA_m5C:0.999536712157815 36505 chr5 134130617 134130617 1 + G T STAD 134130605 + 134130585 134130625 41 ATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC ATGTTTTCAGCTACTTTCCCCAGAGCTATGGATGCTTTGGC < 41bp 1 0.409074325950761 1 0.293816983699799 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130605 chr5:134130617 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_36930 0 0 1 0 2 Cytosol 1 0.50023164344253 1 0.999536713114941 hm5C_site_36505 DeepMRMD:1;iRNA_m5C:0.999536713114941 36506 chr14 96998729 96998729 1 + T C STAD 96998728 + 96998708 96998748 41 CATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTAT CATTGACAACTTCAGGTTAACCCTGAGAGCTATCAAACTAT < 41bp 1 0.277209819505424 1 0.0395649969577789 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96998728 chr14:96998729 synonymous SNV . 0 22 hm5C_associated_SNPs_36931 0 0 1 0 2 Ribosome 1 0.500231643830443 1 0.999536712339113 hm5C_site_36506 DeepMRMD:1;iRNA_m5C:0.999536712339113 36507 chr15 69747800 69747800 1 + A G STAD 69747788 + 69747768 69747808 41 TGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGAGG TGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGGATCCGAGG < 41bp 1 0.462281660590527 1 0.780125498771667 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747788 chr15:69747800 nonsynonymous SNV 0.990 3 33 hm5C_associated_SNPs_36932 0 0 1 0 1 Cytosol 1 0.500231643920266 0.439749002456666 0.999536712159468 hm5C_site_36507 DeepMRMD:0.439749002456666;iRNA_m5C:0.999536712159468 36508 chr15 69747800 69747800 1 + A G STAD 69747803 + 69747783 69747823 41 GGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACA GGAAGCAAAGAAAGAAGGATCCGAGGAGTCTGATGATGACA < 41bp 1 0.258568512297771 1 0.229977369308472 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747803 chr15:69747800 nonsynonymous SNV 0.990 3 18 hm5C_associated_SNPs_36933 0 0 1 0 1 Cytosol 1 0.500231652417813 1 0.999536695164374 hm5C_site_36508 DeepMRMD:1;iRNA_m5C:0.999536695164374 36509 chr6 109484127 109484127 1 + A G STAD 109484132 + 109484112 109484152 41 CAATACGAGTTCATAATCTTCAAATGAAATTGAGAAGAGAT CAATACGAGTTCATAGTCTTCAAATGAAATTGAGAAGAGAT < 41bp 1 0.251885500395025 1 0.309425473213196 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP57L1 ENSG00000183137 CDS Human protein_coding chr6:109484132 chr6:109484127 nonsynonymous SNV 0.945 0 16 hm5C_associated_SNPs_36934 0 0 1 0 0 chromatin 1 0.500231643103505 1 0.99953671379299 hm5C_site_36509 DeepMRMD:1;iRNA_m5C:0.99953671379299 36510 chr4 146468016 146468016 1 + C T STAD 146468006 + 146467986 146468026 41 TCCAACAATAAGAACCGTTTCTGCCTTGGGCTGCTCTCCAA TCCAACAATAAGAACCGTTTCTGCCTTGGGTTGCTCTCCAA < 41bp 1 0.651316176840625 1 0.106463700532913 experiment 0.69736764631875 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146468006 chr4:146468016 synonymous SNV . 0 31 hm5C_associated_SNPs_36936 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36510 DeepMRMD:1;iRNA_m5C:0.999536712157815 36511 chr8 26505247 26505247 1 + A T STAD 26505249 + 26505229 26505269 41 AGGCCGCATTGCTGTGGGATCCGATGCCGACCTGGTCATCT AGGCCGCATTGCTGTGGGTTCCGATGCCGACCTGGTCATCT < 41bp 1 0.16693043684194 1 0.0508511960506439 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26505249 chr8:26505247 synonymous SNV . 0 19 hm5C_associated_SNPs_36937 0 0 1 0 0 Nucleus 1 0.500231643876892 1 0.999536712246216 hm5C_site_36511 DeepMRMD:1;iRNA_m5C:0.999536712246216 36512 chr7 91708815 91708815 1 + T A STAD 91708830 + 91708810 91708850 41 ATAGATCATCTGAGCAAAGACAAACCTGAACTAGAAGTAGT ATAGAACATCTGAGCAAAGACAAACCTGAACTAGAAGTAGT < 41bp 1 0.0716136432005086 1 0.31638690829277 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91708830 chr7:91708815 nonsynonymous SNV 0.094 0 6 hm5C_associated_SNPs_36938 0 0 1 0 0 Nucleus 1 0.500231643516052 1 0.999536712967896 hm5C_site_36512 DeepMRMD:1;iRNA_m5C:0.999536712967896 36513 chr22 21288079 21288079 1 + A T STAD 21288090 + 21288070 21288110 41 TCCAAGCCCACCAATGGGATCTGTCTCAGCACCCAACCTGC TCCAAGCCCTCCAATGGGATCTGTCTCAGCACCCAACCTGC < 41bp 1 0.115164886831233 1 0.169505476951599 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRKL ENSG00000099942 CDS Human protein_coding chr22:21288090 chr22:21288079 synonymous SNV . 0 10 hm5C_associated_SNPs_36940 0 0 1 0 1 Nucleus 1 0.500232116759171 1 0.999535766481658 hm5C_site_36513 DeepMRMD:1;iRNA_m5C:0.999535766481658 36514 chr22 21288079 21288079 1 + A T STAD 21288099 + 21288079 21288119 41 ACCAATGGGATCTGTCTCAGCACCCAACCTGCCTACAGCAG TCCAATGGGATCTGTCTCAGCACCCAACCTGCCTACAGCAG < 41bp 1 0.324956166987337 1 0.304866909980774 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRKL ENSG00000099942 CDS Human protein_coding chr22:21288099 chr22:21288079 synonymous SNV . 0 1 hm5C_associated_SNPs_36941 0 0 1 0 1 Nucleus 1 0.500231639760941 1 0.999536720478118 hm5C_site_36514 DeepMRMD:1;iRNA_m5C:0.999536720478118 36515 chr14 100367326 100367326 1 + G T STAD 100367316 + 100367296 100367336 41 TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGTTT TCTGTGACATTGAATACTCTCCACGTCATTTGAATAGGTTT < 41bp 1 0.200043114921459 1 0.519323348999023 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367316 chr14:100367326 stopgain 0.981 1 31 hm5C_associated_SNPs_36942 0 0 1 0 2 Nucleus 1 0.50023164341003 0.961353302001954 0.999536713179939 hm5C_site_36515 DeepMRMD:0.961353302001954;iRNA_m5C:0.999536713179939 36516 chr11 71946494 71946494 1 + C T STAD 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTATGG < 41bp 1 0.375640587709472 1 0.0293405950069427 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946494 synonymous SNV . 0 39 hm5C_associated_SNPs_36943 0 0 1 0 1 Cytosol 1 0.500225264828393 1 0.999549470343213 hm5C_site_36516 DeepMRMD:1;iRNA_m5C:0.999549470343213 36517 chr11 71946494 71946494 1 + C T STAD 71946478 + 71946458 71946498 41 GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTATGGTG < 41bp 1 0.323997836748546 1 0.0983560979366302 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946478 chr11:71946494 synonymous SNV . 0 37 hm5C_associated_SNPs_36944 0 0 1 0 1 Cytosol 1 0.500231643916907 1 0.999536712166187 hm5C_site_36517 DeepMRMD:1;iRNA_m5C:0.999536712166187 36518 chr11 71946494 71946494 1 + C T STAD 71946479 + 71946459 71946499 41 CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTATGGTGG < 41bp 1 0.158951017330014 1 0.478678941726685 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946479 chr11:71946494 synonymous SNV . 0 36 hm5C_associated_SNPs_36945 0 0 1 0 1 Cytosol 1 0.500226330350238 1 0.999547339299525 hm5C_site_36518 DeepMRMD:1;iRNA_m5C:0.999547339299525 36519 chr18 51887090 51887090 1 + C T STAD 51887099 + 51887079 51887119 41 GATCTGCTTCTCAAGCTCTACAGGCTTATATTGATGATTTT GATCTGCTTCTTAAGCTCTACAGGCTTATATTGATGATTTT < 41bp 1 0.435795073764703 1 0.716485619544983 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C18orf54 ENSG00000166845 CDS Human protein_coding chr18:51887099 chr18:51887090 stopgain 0.893 0 12 hm5C_associated_SNPs_36947 0 0 1 0 0 chromatin 1 0.500231746051331 0.567028760910034 0.999536507897339 hm5C_site_36519 DeepMRMD:0.567028760910034;iRNA_m5C:0.999536507897339 36520 chr1 118477161 118477161 1 + C T STAD 118477159 + 118477139 118477179 41 GCCCCTCCCCAGATGGGCTACACTTAGCTGTTGGGTATGAG GCCCCTCCCCAGATGGGCTACATTTAGCTGTTGGGTATGAG < 41bp 1 0.0537510801201146 1 0.0220582187175751 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR3 ENSG00000065183 CDS Human protein_coding chr1:118477159 chr1:118477161 synonymous SNV . 0 23 hm5C_associated_SNPs_36948 0 0 1 0 1 Nucleus 1 0.500231643921087 1 0.999536712157826 hm5C_site_36520 DeepMRMD:1;iRNA_m5C:0.999536712157826 36521 chr20 32660018 32660018 1 + C A STAD 32660003 + 32659983 32660023 41 AAATCAGATGTGGAGACCATCTTCTCTAAGTATGGCCGTGT AAATCAGATGTGGAGACCATCTTCTCTAAGTATGGACGTGT < 41bp 1 0.143979380686767 1 0.0599859058856964 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32660003 chr20:32660018 synonymous SNV . 0 36 hm5C_associated_SNPs_36951 0 0 1 0 0 Cytosol 1 0.500231643921108 1 0.999536712157784 hm5C_site_36521 DeepMRMD:1;iRNA_m5C:0.999536712157784 36522 chrX 135593206 135593206 1 + A T STAD 135593205 + 135593185 135593225 41 TGAGAAGAAGTTTGAAAAGACAGAAGATGGGGGAGAATTTG TGAGAAGAAGTTTGAAAAGACTGAAGATGGGGGAGAATTTG < 41bp 1 0.658570844156173 1 0.240647584199905 experiment 0.682858311687653 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593205 chrX:135593206 synonymous SNV . 0 22 hm5C_associated_SNPs_36953 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157819 hm5C_site_36522 DeepMRMD:1;iRNA_m5C:0.999536712157819 36523 chr9 109689817 109689817 1 + A G STAD 109689820 + 109689800 109689840 41 CGGACGGTCAAAGGGGTACTCATTCATTATCAGAAGAAGCA CGGACGGTCAAAGGGGTGCTCATTCATTATCAGAAGAAGCA < 41bp 1 0.0180914320689186 1 0.0910272300243378 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109689820 chr9:109689817 synonymous SNV . 0 18 hm5C_associated_SNPs_36954 0 0 1 0 0 exosome 1 0.500231637918959 1 0.999536724162083 hm5C_site_36523 DeepMRMD:1;iRNA_m5C:0.999536724162083 36524 chr19 1278978 1278978 1 + C T STAD 1278968 + 1278948 1278988 41 GACCTGTTGCCACCTGCACCCACCGCTGGACCATGCAGCCT GACCTGTTGCCACCTGCACCCACCGCTGGATCATGCAGCCT < 41bp 1 0.664773723840755 1 0.0836685597896576 experiment 0.670452552318489 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C19orf24 ENSG00000228300 CDS Human protein_coding chr19:1278968 chr19:1278978 nonsynonymous SNV 0.002 0 31 hm5C_associated_SNPs_36955 0 0 1 0 0 Ribosome 1 0.50023164391942 1 0.99953671216116 hm5C_site_36524 DeepMRMD:1;iRNA_m5C:0.99953671216116 36525 chr12 58109590 58109590 1 + C T STAD 58109596 + 58109576 58109616 41 GACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTA GACTACATCGATCGTGTGGACGAGCCCTTGTCCTGCTCTTA < 41bp 1 0.438966852805396 1 0.46274870634079 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58109596 chr12:58109590 synonymous SNV . 0 15 hm5C_associated_SNPs_36956 0 0 1 0 1 Nucleus 1 0.500231643150986 1 0.999536713698027 hm5C_site_36525 DeepMRMD:1;iRNA_m5C:0.999536713698027 36526 chr12 58109590 58109590 1 + C T STAD 58109602 + 58109582 58109622 41 ATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT ATCGATCGTGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT < 41bp 1 0.401407740976751 1 0.0412681102752686 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OS9 ENSG00000135506 CDS Human protein_coding chr12:58109602 chr12:58109590 synonymous SNV . 0 9 hm5C_associated_SNPs_36957 0 0 1 0 1 Nucleus 1 0.500231631317621 1 0.999536737364758 hm5C_site_36526 DeepMRMD:1;iRNA_m5C:0.999536737364758 36527 chr11 119205959 119205959 1 + G A STAD 119205950 + 119205930 119205970 41 TGGCTTCCCTGGCCTGGCTCCTGGCCTTCGTCTACAACCTG TGGCTTCCCTGGCCTGGCTCCTGGCCTTCATCTACAACCTG < 41bp 1 0.450567692043532 1 0.412740588188171 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF26 ENSG00000173456 CDS Human protein_coding chr11:119205950 chr11:119205959 nonsynonymous SNV 0.998 0 30 hm5C_associated_SNPs_36958 0 0 1 0 0 chromatin 1 0.500231956023133 1 0.999536087953733 hm5C_site_36527 DeepMRMD:1;iRNA_m5C:0.999536087953733 36528 chr17 37359273 37359273 1 + G T STAD 37359287 + 37359267 37359307 41 CCGAATGCCAGAGAAGGTCACATGGATGAGGAGAATGAGGA CCGAATTCCAGAGAAGGTCACATGGATGAGGAGAATGAGGA < 41bp 1 0.433724196089659 1 0.290698826313019 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359287 chr17:37359273 nonsynonymous SNV 0.990 2 7 hm5C_associated_SNPs_36959 0 0 1 0 2 chromatin 1 0.500231661821671 1 0.999536676356659 hm5C_site_36528 DeepMRMD:1;iRNA_m5C:0.999536676356659 36529 chr8 124787521 124787521 1 + T C STAD 124787510 + 124787490 124787530 41 GAAAGGCTTGAGGATAACACCATTTTCATATTATACTGGGA GAAAGGCTTGAGGATAACACCATTTTCATATCATACTGGGA < 41bp 1 0.0914636985078387 1 0.227232575416565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787510 chr8:124787521 nonsynonymous SNV 0.978 3 32 hm5C_associated_SNPs_36960 0 0 0 0 1 Ribosome 1 0.500232714583907 1 0.999534570832186 hm5C_site_36529 DeepMRMD:1;iRNA_m5C:0.999534570832186 36530 chr4 119631225 119631225 1 + C T STAD 119631220 + 119631200 119631240 41 GAAACATATGCATCCTATTTCAGTGCTCCTAATTCCTACTT GAAACATATGCATCCTATTTCAGTGTTCCTAATTCCTACTT < 41bp 1 0.597765866067689 1 0.365167498588562 experiment 0.804468267864622 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control METTL14 ENSG00000145388 CDS Human protein_coding chr4:119631220 chr4:119631225 nonsynonymous SNV 0.904 0 26 hm5C_associated_SNPs_36961 0 0 1 0 1 Nucleus 1 0.500231643921119 1 0.999536712157763 hm5C_site_36530 DeepMRMD:1;iRNA_m5C:0.999536712157763 36531 chr11 67017889 67017889 1 + A T STAD 67017891 + 67017871 67017911 41 GAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACGCTAC GAAAGCCAAGATCCGGGGTTCGTACCTCACTGTCACGCTAC < 41bp 1 0.10161049309749 1 0.0782735347747803 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67017891 chr11:67017889 synonymous SNV . 0 19 hm5C_associated_SNPs_36962 0 0 1 0 0 Cytosol 1 0.500231641903477 1 0.999536716193045 hm5C_site_36531 DeepMRMD:1;iRNA_m5C:0.999536716193045 36532 chr16 2812491 2812491 1 + A G STAD 2812509 + 2812489 2812529 41 AGACGTGGCCGCTCACGCTCCAGAACCCCAGCCAGACGTGG AGGCGTGGCCGCTCACGCTCCAGAACCCCAGCCAGACGTGG < 41bp 1 0.604975120820814 1 0.798301815986633 experiment 0.790049758358373 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2812509 chr16:2812491 synonymous SNV . 0 3 hm5C_associated_SNPs_36963 0 0 1 0 0 Nucleus 1 0.500231643957632 0.403396368026734 0.999536712084736 hm5C_site_36532 DeepMRMD:0.403396368026734;iRNA_m5C:0.999536712084736 36533 chr22 40661413 40661413 1 + A T STAD 40661395 + 40661375 40661415 41 TTGAACTTAAGTTCACCAAACCCCATGGAGAATAAGGGAAT TTGAACTTAAGTTCACCAAACCCCATGGAGAATAAGGGTAT < 41bp 1 0.149907527250321 1 0.100488543510437 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40661395 chr22:40661413 synonymous SNV . 0 39 hm5C_associated_SNPs_36964 0 0 1 0 0 Cytosol 1 0.500231643859613 1 0.999536712280773 hm5C_site_36533 DeepMRMD:1;iRNA_m5C:0.999536712280773 36534 chr16 12450122 12450122 1 + G A STAD 12450135 + 12450115 12450155 41 GCTCATCGATCTCCGGGGACCGGTGAGTGTTTCCCCAACCC GCTCATCAATCTCCGGGGACCGGTGAGTGTTTCCCCAACCC < 41bp 1 0.355150423374034 1 0.429778933525085 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12450135 chr16:12450122 nonsynonymous SNV 0.875 1 8 hm5C_associated_SNPs_36965 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36534 DeepMRMD:1;iRNA_m5C:0.999536712157815 36535 chr8 41355108 41355108 1 + A G STAD 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGCCAGTCGTATCTCGAAGGTTGT < 41bp 1 0.186183492773327 1 0.314176797866821 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355108 synonymous SNV . 0 26 hm5C_associated_SNPs_36966 0 0 1 0 2 Ribosome 1 0.500231643919852 1 0.999536712160297 hm5C_site_36535 DeepMRMD:1;iRNA_m5C:0.999536712160297 36536 chrX 73042647 73042647 1 + A G STAD 73042631 - 73042611 73042651 41 AGAGTGGGAATAAGAGAGGGCTTTTTATTTTTTCGTTCATA AGAGCGGGAATAAGAGAGGGCTTTTTATTTTTTCGTTCATA < 41bp 1 0.0119644382748558 1 0.0305525958538055 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042631 chrX:73042647 . . 0 5 hm5C_associated_SNPs_36967 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_36536 DeepMRMD:1;iRNA_m5C:0.999536712157816 36537 chr15 85164124 85164124 1 + G A STAD 85164140 + 85164120 85164160 41 AGCCGGAAATCCCACCTCATCACACACGAGAGGACCCACAC AGCCAGAAATCCCACCTCATCACACACGAGAGGACCCACAC < 41bp 1 0.445573485190866 1 0.706586241722107 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSCAN2 ENSG00000176371 CDS Human protein_coding chr15:85164140 chr15:85164124 nonsynonymous SNV 0.995 1 5 hm5C_associated_SNPs_36968 0 0 0 0 0 Nucleus 1 0.500231643923238 0.586827516555786 0.999536712153524 hm5C_site_36537 DeepMRMD:0.586827516555786;iRNA_m5C:0.999536712153524 36538 chr15 40862035 40862035 1 + A G STAD 40862046 + 40862026 40862066 41 CACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTA CACGTCTTCGGTACCGAGTTCCGAGCTCAGCCCCTGGCCTA < 41bp 1 0.40064986423721 1 0.661861300468445 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40862046 chr15:40862035 nonsynonymous SNV 1.000 0 10 hm5C_associated_SNPs_36969 0 0 1 0 0 Cytosol 1 0.500231652564989 0.67627739906311 0.999536694870022 hm5C_site_36538 DeepMRMD:0.67627739906311;iRNA_m5C:0.999536694870022 36539 chr15 40862035 40862035 1 + A G STAD 40862047 + 40862027 40862067 41 ACGTCTTCAGTACCGAGTTCCGAGCTCAGCCCCTGGCCTAC ACGTCTTCGGTACCGAGTTCCGAGCTCAGCCCCTGGCCTAC < 41bp 1 0.574241557685452 1 0.901342570781708 experiment 0.851516884629096 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40862047 chr15:40862035 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_36970 0 0 1 0 0 Cytosol 1 0.500231750906519 0.197314858436584 0.999536498186963 hm5C_site_36539 DeepMRMD:0.197314858436584;iRNA_m5C:0.999536498186963 36540 chr12 64878159 64878159 1 + C T STAD 64878177 + 64878157 64878197 41 GGCGACGCTTAGTCTTAGAACCTGGAAGGCTGGCACAACAT GGTGACGCTTAGTCTTAGAACCTGGAAGGCTGGCACAACAT < 41bp 1 0.393497882328777 1 0.471804559230804 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBK1 ENSG00000183735 CDS Human protein_coding chr12:64878177 chr12:64878159 stopgain 0.981 1 3 hm5C_associated_SNPs_36971 0 0 1 0 1 chromatin 1 0.500231643905114 1 0.999536712189771 hm5C_site_36540 DeepMRMD:1;iRNA_m5C:0.999536712189771 36541 chr10 102824622 102824622 1 + T C STAD 102824602 + 102824582 102824622 41 GACCAGCTGAACTCTACAGGCATCCCCCAGCTGCGATCACT GACCAGCTGAACTCTACAGGCATCCCCCAGCTGCGATCACC < 41bp 1 0.0389411136064353 1 0.0369264185428619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824602 chr10:102824622 nonsynonymous SNV 0.049 0 41 hm5C_associated_SNPs_36972 0 0 1 1 2 nucleus 1 0.500231643029347 1 0.999536713941305 hm5C_site_36541 DeepMRMD:1;iRNA_m5C:0.999536713941305 36542 chrX 69639532 69639532 1 + C T STAD 69639552 + 69639532 69639572 41 CGGACCCAGGATTCCGAAGGCTCCTTCAAACTGGAGGATCC TGGACCCAGGATTCCGAAGGCTCCTTCAAACTGGAGGATCC < 41bp 1 0.33922377495632 1 0.341588944196701 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639552 chrX:69639532 nonsynonymous SNV 0.178 0 1 hm5C_associated_SNPs_36973 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36542 DeepMRMD:1;iRNA_m5C:0.999536712157815 36543 chr3 196304328 196304328 1 + G A STAD 196304336 + 196304316 196304356 41 CTTTTTAGATACGTGCTTTTCAACATGCCTTCAGCACTAAT CTTTTTAGATACATGCTTTTCAACATGCCTTCAGCACTAAT < 41bp 1 0.555543702744456 1 0.43685594201088 experiment 0.888912594511088 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO45 ENSG00000174013 CDS Human protein_coding chr3:196304336 chr3:196304328 nonsynonymous SNV 0.990 4 13 hm5C_associated_SNPs_36974 0 0 0 0 1 Cytosol 1 0.500231646831313 1 0.999536706337374 hm5C_site_36543 DeepMRMD:1;iRNA_m5C:0.999536706337374 36544 chr12 72316783 72316783 1 + T C STAD 72316769 + 72316749 72316789 41 TTTTTCATATCCAGGAATTGCCACAAGCAGTCTGTGAGATC TTTTTCATATCCAGGAATTGCCACAAGCAGTCTGCGAGATC < 41bp 1 0.399784884100026 1 0.103412002325058 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72316769 chr12:72316783 synonymous SNV . 0 35 hm5C_associated_SNPs_36975 0 0 1 0 1 Cytosol 1 0.500231644082602 1 0.999536711834796 hm5C_site_36544 DeepMRMD:1;iRNA_m5C:0.999536711834796 36545 chr5 150027979 150027979 1 + C A STAD 150027987 + 150027967 150028007 41 CTGTCCCAAAACCGAGAGGCCCAGCAGTCCTCACCGGCCCC CTGTCCCAAAACAGAGAGGCCCAGCAGTCCTCACCGGCCCC < 41bp 1 0.110922642003179 1 0.0727766752243042 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYNPO ENSG00000171992 CDS Human protein_coding chr5:150027987 chr5:150027979 synonymous SNV . 0 13 hm5C_associated_SNPs_36977 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921099 1 0.999536712157803 hm5C_site_36545 DeepMRMD:1;iRNA_m5C:0.999536712157803 36546 chr16 28845679 28845679 1 + C A STAD 28845668 + 28845648 28845688 41 GTGTCCTCATCCCCAGGCACCTCAGATGTATCCATATCCTG GTGTCCTCATCCCCAGGCACCTCAGATGTATACATATCCTG < 41bp 1 0.300331237834003 1 0.0915851891040802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845668 chr16:28845679 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_36978 0 0 1 0 2 Cytosol 1 0.500231644471609 1 0.999536711056782 hm5C_site_36546 DeepMRMD:1;iRNA_m5C:0.999536711056782 36547 chr12 122213555 122213555 1 + G A STAD 122213570 + 122213550 122213590 41 CCTCGGCAACTTCCTGACCACGCTCAAAGTCGTGCATGCCA CCTCGACAACTTCCTGACCACGCTCAAAGTCGTGCATGCCA < 41bp 1 0.104575707268593 1 0.101102143526077 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM120B ENSG00000188735 CDS Human protein_coding chr12:122213570 chr12:122213555 nonsynonymous SNV 0.945 4 6 hm5C_associated_SNPs_36979 0 0 1 0 1 Ribosome 1 0.498397932738711 1 1 hm5C_site_36547 DeepMRMD:1;iRNA_m5C:1 36548 chr5 139928648 139928648 1 + G T STAD 139928628 + 139928608 139928648 41 CTCTCTCCAAGCTGGAGGAGCTGAAGGAGCAGGAGACAGAG CTCTCTCCAAGCTGGAGGAGCTGAAGGAGCAGGAGACAGAT < 41bp 1 0.573086724830526 1 0.406953275203705 experiment 0.853826550338948 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1-EIF4EBP3;EIF4EBP3 ENSG00000131503;ENSG00000243056;ENSG00000254996 CDS Human other chr5:139928628 chr5:139928648 stopgain 1.000 0 41 hm5C_associated_SNPs_36980 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_36548 DeepMRMD:1;iRNA_m5C:0.999536712157815 36549 chr22 39382383 39382383 1 + G A STAD 39382388 + 39382368 39382408 41 TTCGATGAAAATTATGCATTCCTGCACCGCACGCTAAAGGA TTCGATGAAAATTATACATTCCTGCACCGCACGCTAAAGGA < 41bp 1 0.0633333707516287 1 0.0823869407176971 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382388 chr22:39382383 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_36981 0 0 0 0 2 exosome 1 0.500231964559468 1 0.999536070881063 hm5C_site_36549 DeepMRMD:1;iRNA_m5C:0.999536070881063 36550 chr5 140741611 140741611 1 + G A STAD 140741612 + 140741592 140741632 41 TGCCTTGGGCGACAGGGACGCGGCCCGCCAGCGCCTGCTGG TGCCTTGGGCGACAGGGACACGGCCCGCCAGCGCCTGCTGG < 41bp 1 0.414354984994339 1 0.436986207962036 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741612 chr5:140741611 nonsynonymous SNV 0.957 1 20 hm5C_associated_SNPs_36982 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36550 DeepMRMD:1;iRNA_m5C:0.999536712157815 36551 chr16 8735041 8735041 1 + G T STAD 8735032 + 8735012 8735052 41 TGGACTGGCTGAAGGACGACCTCTGCACAGGTGTGTGTTTC TGGACTGGCTGAAGGACGACCTCTGCACATGTGTGTGTTTC < 41bp 1 0.203623980524975 1 0.378254532814026 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735032 chr16:8735041 nonsynonymous SNV 0.969 4 30 hm5C_associated_SNPs_36983 0 0 1 0 2 Cytosol 1 0.500231402665719 1 0.999537194668562 hm5C_site_36551 DeepMRMD:1;iRNA_m5C:0.999537194668562 36552 chr2 113243546 113243546 1 + A G STAD 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTGAATTACTACAGGGGTGCTGACAAGCTGTGTCGCAAAG < 41bp 1 0.270143085720802 1 0.123491704463959 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243546 synonymous SNV . 0 28 hm5C_associated_SNPs_36984 0 0 1 0 2 Cytosol 1 0.500231643981736 1 0.999536712036527 hm5C_site_36552 DeepMRMD:1;iRNA_m5C:0.999536712036527 36553 chr3 179104341 179104341 1 + T C STAD 179104323 + 179104303 179104343 41 GGACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGTTT GGACCACCCATGCCAAGGAGCGAGCCTTTAAACAGCAGCTT < 41bp 1 0.403162863006912 1 0.427637100219727 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MFN1 ENSG00000171109 CDS Human protein_coding chr3:179104323 chr3:179104341 nonsynonymous SNV 1.000 5 39 hm5C_associated_SNPs_36985 0 0 1 1 1 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_36553 DeepMRMD:1;iRNA_m5C:0.999536712157813 36554 chr6 11565992 11565992 1 + A T STAD 11565991 + 11565971 11566011 41 TGTTTGTGATGCTGCAGAGGCATAGGCAGGGAAGAGTCATC TGTTTGTGATGCTGCAGAGGCTTAGGCAGGGAAGAGTCATC < 41bp 1 0.350136324695879 1 0.0957486033439636 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMEM170B ENSG00000205269 CDS Human protein_coding chr6:11565991 chr6:11565992 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_36986 0 0 1 0 2 Nucleus 1 0.500231643921095 1 0.999536712157809 hm5C_site_36554 DeepMRMD:1;iRNA_m5C:0.999536712157809 36555 chr2 220349088 220349088 1 + G A STAD 220349085 + 220349065 220349105 41 GTGCCCTCAGCCGGGGGTCCCCCGGTGCTAGCCGAGAAAGC GTGCCCTCAGCCGGGGGTCCCCCAGTGCTAGCCGAGAAAGC < 41bp 1 0.14679108093168 1 0.27216899394989 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPEG ENSG00000072195 CDS Human protein_coding chr2:220349085 chr2:220349088 synonymous SNV . 0 24 hm5C_associated_SNPs_36987 0 0 0 0 0 Nucleus 1 0.500231643916768 1 0.999536712166465 hm5C_site_36555 DeepMRMD:1;iRNA_m5C:0.999536712166465 36556 chr3 183368392 183368392 1 + T C STAD 183368408 + 183368388 183368428 41 GCTGTGCTCTCAGCCTGTAGCAGCTACTTCAGAGCTATGTT GCTGCGCTCTCAGCCTGTAGCAGCTACTTCAGAGCTATGTT < 41bp 1 0.531795996186647 1 0.24133825302124 experiment 0.936408007626706 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183368408 chr3:183368392 nonsynonymous SNV 0.982 1 5 hm5C_associated_SNPs_36988 0 0 1 0 0 Ribosome 1 0.500231644212042 1 0.999536711575917 hm5C_site_36556 DeepMRMD:1;iRNA_m5C:0.999536711575917 36557 chr3 170078472 170078472 1 + C A STAD 170078471 + 170078451 170078491 41 ATTCCCAAGAAAGCATGTCGCCTACTGTATTTCTGCCTCTT ATTCCCAAGAAAGCATGTCGCATACTGTATTTCTGCCTCTT < 41bp 1 0.292061172432202 1 0.040166050195694 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SKIL ENSG00000136603 CDS Human protein_coding chr3:170078471 chr3:170078472 nonsynonymous SNV 0.861 5 22 hm5C_associated_SNPs_36989 0 0 1 0 0 Nucleus 1 0.500231643921096 1 0.999536712157808 hm5C_site_36557 DeepMRMD:1;iRNA_m5C:0.999536712157808 36558 chr3 45559430 45559430 1 + C T STAD 45559415 + 45559395 45559435 41 CTGATGCTCTCCCTGGGGTGCTGAGATGGCAACAACGACTG CTGATGCTCTCCCTGGGGTGCTGAGATGGCAACAATGACTG < 41bp 1 0.400371419376464 1 0.148492366075516 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45559415 chr3:45559430 stopgain 0.929 1 36 hm5C_associated_SNPs_36990 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643498734 1 0.999536713002533 hm5C_site_36558 DeepMRMD:1;iRNA_m5C:0.999536713002533 36559 chr21 34925015 34925015 1 + T C STAD 34925019 + 34924999 34925039 41 CCCAACAATGCCACCGTTGCCACCTGAGGAGCCACCAATGA CCCAACAATGCCACCGCTGCCACCTGAGGAGCCACCAATGA < 41bp 1 0.549674050209219 1 0.240454226732254 experiment 0.900651899581562 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SON ENSG00000159140 CDS Human protein_coding chr21:34925019 chr21:34925015 synonymous SNV . 0 17 hm5C_associated_SNPs_36991 0 0 1 0 0 Nucleus 1 0.500231645350771 1 0.999536709298458 hm5C_site_36559 DeepMRMD:1;iRNA_m5C:0.999536709298458 36560 chr11 61511088 61511088 1 + G T STAD 61511075 + 61511055 61511095 41 GCTGTCGCCAGTGGTTGCGGCGGCGGCCCGCCAGGACCCGG GCTGTCGCCAGTGGTTGCGGCGGCGGCCCGCCATGACCCGG < 41bp 1 0.595614218099104 1 0.878758668899536 experiment 0.808771563801793 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61511075 chr11:61511088 nonsynonymous SNV 0.786 1 34 hm5C_associated_SNPs_36992 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.242482662200928 0.999536712157815 hm5C_site_36560 DeepMRMD:0.242482662200928;iRNA_m5C:0.999536712157815 36561 chrX 48399802 48399802 1 + A G STAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACGTCCTCATCCGAGCCTTTGATTTGAGTGG < 41bp 1 0.495902799833226 1 0.321633756160736 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399802 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_36993 0 0 0 0 3 nucleolus 1 0.500231643952521 1 0.999536712094958 hm5C_site_36561 DeepMRMD:1;iRNA_m5C:0.999536712094958 36562 chr1 17272839 17272839 1 + T G STAD 17272843 + 17272823 17272863 41 GACTCCCTGTCCAAGCTGAGCGCCCTCAACGAGAGCCTTGC GACTCCCTGTCCAAGCGGAGCGCCCTCAACGAGAGCCTTGC < 41bp 1 0.112155953429489 1 0.0421853363513947 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17272843 chr1:17272839 nonsynonymous SNV 0.946 1 17 hm5C_associated_SNPs_36995 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36562 DeepMRMD:1;iRNA_m5C:0.999536712157815 36563 chr12 125603191 125603191 1 + G A STAD 125603189 + 125603169 125603209 41 TCCCTCCTGTCTTTGCAGGTCGGCTGGATGATGTGGAACTG TCCCTCCTGTCTTTGCAGGTCGACTGGATGATGTGGAACTG < 41bp 1 0.423919264469733 1 0.444404453039169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125603189 chr12:125603191 nonsynonymous SNV 0.938 4 23 hm5C_associated_SNPs_36996 0 0 0 0 1 Ribosome 1 0.500231643921083 1 0.999536712157835 hm5C_site_36563 DeepMRMD:1;iRNA_m5C:0.999536712157835 36564 chr20 57480479 57480479 1 + A G STAD 57480488 + 57480468 57480508 41 GAGGATGAAGGAGTGCGTGCCTGCTACGAACGCTCCAACGA GAGGATGAAGGGGTGCGTGCCTGCTACGAACGCTCCAACGA < 41bp 1 0.572991956798792 1 0.367827594280243 experiment 0.854016086402415 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GNAS ENSG00000087460 CDS Human protein_coding chr20:57480488 chr20:57480479 synonymous SNV . 0 12 hm5C_associated_SNPs_36997 0 0 1 2 2 Cytosol 1 0.500257580244749 1 0.999484839510501 hm5C_site_36564 DeepMRMD:1;iRNA_m5C:0.999484839510501 36565 chr5 10411586 10411586 1 + A G STAD 10411602 + 10411582 10411622 41 CCATACTCCAGCAGGGAGGGCCTGTTGGCTTTCAGCCTTAC CCATGCTCCAGCAGGGAGGGCCTGTTGGCTTTCAGCCTTAC < 41bp 1 0.093936859858684 1 0.0476987063884735 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10411602 chr5:10411586 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_36999 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_36565 DeepMRMD:1;iRNA_m5C:0.999536712157815 36566 chr1 145509207 145509207 1 + G A STAD 145509191 + 145509171 145509211 41 GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACGTCGCTGA GCCGAAGACGCAGCAGAAGTCCAGACCGGAGACGTCACTGA < 41bp 1 0.33683533609304 1 0.394762217998505 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM8A ENSG00000131795 CDS Human other chr1:145509191 chr1:145509207 nonsynonymous SNV . 0 37 hm5C_associated_SNPs_37000 0 0 0 0 1 Ribosome 1 0.500231643927012 1 0.999536712145976 hm5C_site_36566 DeepMRMD:1;iRNA_m5C:0.999536712145976 36567 chr1 145509207 145509207 1 + G A STAD 145509206 + 145509186 145509226 41 GAAGTCCAGACCGGAGACGTCGCTGACAGGTCCTCTGTTGT GAAGTCCAGACCGGAGACGTCACTGACAGGTCCTCTGTTGT < 41bp 1 0.153079819968647 1 0.0444760322570801 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM8A ENSG00000131795 CDS Human other chr1:145509206 chr1:145509207 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_37001 0 0 0 0 1 Ribosome 1 0.500231643921264 1 0.999536712157473 hm5C_site_36567 DeepMRMD:1;iRNA_m5C:0.999536712157473 36568 chr6 5369396 5369396 1 + G A STAD 5369391 + 5369371 5369411 41 ATTTTCCACCAGCTGGAGGCCGTGCGGCTCTTCTCCAAGCA ATTTTCCACCAGCTGGAGGCCGTGCAGCTCTTCTCCAAGCA < 41bp 1 0.195293364338774 1 0.372743487358093 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FARS2 ENSG00000145982 CDS Human protein_coding chr6:5369391 chr6:5369396 nonsynonymous SNV 0.996 4 26 hm5C_associated_SNPs_37002 0 0 1 0 1 Ribosome 1 0.500231669416157 1 0.999536661167685 hm5C_site_36568 DeepMRMD:1;iRNA_m5C:0.999536661167685 36569 chr1 201489468 201489468 1 + G A STAD 201489466 + 201489446 201489486 41 ATTGTGCCTGCCACCTTACACCGCAGCTGTCCAGAGACTGG ATTGTGCCTGCCACCTTACACCACAGCTGTCCAGAGACTGG < 41bp 1 0.645828484350997 1 0.0529473125934601 experiment 0.708343031298005 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS10P7 ENSG00000223396;ENSG00000242150 ncRNA_exonic Human other chr1:201489466 chr1:201489468 . . 0 23 hm5C_associated_SNPs_37004 0 0 0 0 0 unknown 1 0.500231660528376 1 0.999536678943247 hm5C_site_36569 DeepMRMD:1;iRNA_m5C:0.999536678943247 36570 chr3 50683579 50683579 1 + G A STAD 50683592 + 50683572 50683612 41 CTTTGTGGCTTCCCACCCTTCTACTCCAACACGGGCCAGGC CTTTGTGACTTCCCACCCTTCTACTCCAACACGGGCCAGGC < 41bp 1 0.355707084181018 1 0.217604100704193 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683592 chr3:50683579 nonsynonymous SNV 0.996 4 8 hm5C_associated_SNPs_37005 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36570 DeepMRMD:1;iRNA_m5C:0.999536712157815 36571 chr1 242042466 242042466 1 + C T STAD 242042447 + 242042427 242042467 41 CAGCAGTTCCGAAGAAAGAGCGATTCCCCCACCTCTTTGCC CAGCAGTTCCGAAGAAAGAGCGATTCCCCCACCTCTTTGTC < 41bp 1 0.196243201465277 1 0.11928391456604 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242042447 chr1:242042466 nonsynonymous SNV 0.055 0 40 hm5C_associated_SNPs_37006 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_36571 DeepMRMD:1;iRNA_m5C:0.999536712157815 36572 chr2 182786931 182786931 1 + C T STAD 182786940 + 182786920 182786960 41 GGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCTCTG GGTGGCTCTAATGCCAACAGCTCCTTCTAGAACAGGCTCTG < 41bp 1 0.463927074054266 1 0.245652139186859 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182786940 chr2:182786931 nonsynonymous SNV 0.216 2 12 hm5C_associated_SNPs_37007 0 0 1 0 0 Ribosome 1 0.50023108569245 1 0.9995378286151 hm5C_site_36572 DeepMRMD:1;iRNA_m5C:0.9995378286151 36573 chr21 30411810 30411810 1 + G A STAD 30411804 + 30411784 30411824 41 CTTTTTGTTTTTCTCTAGAGCAGTGCGGTTTAAAGGCTATC CTTTTTGTTTTTCTCTAGAGCAGTGCAGTTTAAAGGCTATC < 41bp 1 0.253083281300632 1 0.130254179239273 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30411804 chr21:30411810 nonsynonymous SNV 0.943 4 27 hm5C_associated_SNPs_37008 0 0 1 0 2 Ribosome 1 0.500231664687237 1 0.999536670625526 hm5C_site_36573 DeepMRMD:1;iRNA_m5C:0.999536670625526 36574 chr10 17275845 17275845 1 + C T STAD 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCATGGCTGCCCTGCGTGACGTACGTCAGCAA < 41bp 1 0.651629762763347 1 0.779238402843475 experiment 0.696740474473305 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275845 nonsynonymous SNV 0.999 5 13 hm5C_associated_SNPs_37009 0 0 1 0 2 Ribosome 1 0.500231592888221 0.44152319431305 0.999536814223557 hm5C_site_36574 DeepMRMD:0.44152319431305;iRNA_m5C:0.999536814223557 36575 chr10 17275845 17275845 1 + C T STAD 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCATGGCTGCCCTGCGTGACGTACGTCAGCAATAT < 41bp 1 0.403729767074679 1 0.108016759157181 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275845 nonsynonymous SNV 0.999 5 10 hm5C_associated_SNPs_37010 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36575 DeepMRMD:1;iRNA_m5C:0.999536712157815 36576 chr10 17275845 17275845 1 + C T STAD 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCATGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG < 41bp 1 0.11013117230647 1 0.0413139164447784 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275845 nonsynonymous SNV 0.999 5 5 hm5C_associated_SNPs_37011 0 0 1 0 2 Ribosome 1 0.500231684440403 1 0.999536631119193 hm5C_site_36576 DeepMRMD:1;iRNA_m5C:0.999536631119193 36577 chr5 169127051 169127051 1 + A G STAD 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGGTGGGTGGCATCATTCAGATTCGCAAGGACTATCCA < 41bp 1 0.528922065077179 1 0.843352317810059 experiment 0.942155869845642 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127051 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_37012 0 0 1 0 2 Cytosol 1 0.500231641968381 0.313295364379882 0.999536716063238 hm5C_site_36577 DeepMRMD:0.313295364379882;iRNA_m5C:0.999536716063238 36578 chr22 40697276 40697276 1 + C T STAD 40697295 + 40697275 40697315 41 ACGCATTGAATGTGGGGCTCCCAGACCTTCAAACCAAAGGG ATGCATTGAATGTGGGGCTCCCAGACCTTCAAACCAAAGGG < 41bp 1 0.190786038043668 1 0.493287831544876 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40697295 chr22:40697276 synonymous SNV . 0 2 hm5C_associated_SNPs_37015 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36578 DeepMRMD:1;iRNA_m5C:0.999536712157815 36579 chr3 10320676 10320676 1 + G A STAD 10320688 + 10320668 10320708 41 GCTGCCTTGCGTGAGAACACCAGTCGCCTCTACAGTCTTTA GCTGCCTTACGTGAGAACACCAGTCGCCTCTACAGTCTTTA < 41bp 1 0.144090389894953 1 0.116946876049042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320688 chr3:10320676 synonymous SNV . 0 9 hm5C_associated_SNPs_37017 0 0 1 0 2 Cytosol 1 0.500231512384101 1 0.999536975231798 hm5C_site_36579 DeepMRMD:1;iRNA_m5C:0.999536975231798 36580 chr17 30806294 30806294 1 + T A STAD 30806305 + 30806285 30806325 41 GGGCAGAGCTCCGGGATGACCCAATCATCAGCACACACTTG GGGCAGAGCACCGGGATGACCCAATCATCAGCACACACTTG < 41bp 1 0.187622000045355 1 0.260987907648087 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30806305 chr17:30806294 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_37018 0 0 1 0 1 Ribosome 1 0.500229448094535 1 0.99954110381093 hm5C_site_36580 DeepMRMD:1;iRNA_m5C:0.99954110381093 36581 chr14 35592599 35592599 1 + A C STAD 35592593 + 35592573 35592613 41 ACCAGCAGAGGTTGTTTTCTCTTAAAACAATGTCTCCACAG ACCAGCAGAGGTTGTTTTCTCTTAAACCAATGTCTCCACAG < 41bp 1 0.618665406254856 1 0.447177737951279 experiment 0.762669187490288 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KIAA0391 ENSG00000100890;ENSG00000258790 CDS Human other chr14:35592593 chr14:35592599 nonsynonymous SNV 0.443 0 27 hm5C_associated_SNPs_37019 0 0 1 0 0 Endoplasmic reticulum 1 0.500231653876301 1 0.999536692247399 hm5C_site_36581 DeepMRMD:1;iRNA_m5C:0.999536692247399 36582 chr1 228346604 228346604 1 + G A STAD 228346609 + 228346589 228346629 41 TCCCTGCGGCCTCCCGGGGGCCCCCCAGAGCAGGCGCCCCC TCCCTGCGGCCTCCCAGGGGCCCCCCAGAGCAGGCGCCCCC < 41bp 1 0.185508366107728 1 0.045114666223526 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GJC2 ENSG00000198835 CDS Human protein_coding chr1:228346609 chr1:228346604 nonsynonymous SNV 0.001 1 16 hm5C_associated_SNPs_37020 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36582 DeepMRMD:1;iRNA_m5C:0.999536712157815 36583 chr17 48154422 48154422 1 + C T STAD 48154408 + 48154388 48154428 41 CGAACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCAC CGAACACCCGGACCTCGGAGCGCTCCGGGGAGGATGCCCAC < 41bp 1 0.115233219455647 1 0.190555453300476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154408 chr17:48154422 synonymous SNV . 0 35 hm5C_associated_SNPs_37021 0 0 0 0 2 Cytosol 1 0.5002316439211 1 0.9995367121578 hm5C_site_36583 DeepMRMD:1;iRNA_m5C:0.9995367121578 36584 chr17 48154422 48154422 1 + C T STAD 48154410 + 48154390 48154430 41 AACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCACGA AACACCCGGACCTCGGAGCGCTCCGGGGAGGATGCCCACGA < 41bp 1 0.657847193190022 1 0.723899602890015 experiment 0.684305613619955 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154410 chr17:48154422 synonymous SNV . 0 33 hm5C_associated_SNPs_37022 0 0 0 0 2 Cytosol 1 0.500231643921424 0.55220079421997 0.999536712157153 hm5C_site_36584 DeepMRMD:0.55220079421997;iRNA_m5C:0.999536712157153 36585 chr17 59161841 59161841 1 + C T STAD 59161840 + 59161820 59161860 41 CATTGCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCAT CATTGCAGGATCCAGCCAGTCTGCTCTGACCCCGTCAGCAT < 41bp 1 0.489697397231464 1 0.13773512840271 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BCAS3 ENSG00000141376 CDS Human protein_coding chr17:59161840 chr17:59161841 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_37023 0 0 1 0 2 Cytosol 1 0.500231643846972 1 0.999536712306057 hm5C_site_36585 DeepMRMD:1;iRNA_m5C:0.999536712306057 36586 chr20 44469671 44469671 1 + C T STAD 44469656 + 44469636 44469676 41 TGCAAGCCCAGCTGGGCACCCCCTCTGGCCCAGACCGCCCC TGCAAGCCCAGCTGGGCACCCCCTCTGGCCCAGACTGCCCC < 41bp 1 0.156719010925781 1 0.100897014141083 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX21 ENSG00000124104 CDS Human protein_coding chr20:44469656 chr20:44469671 nonsynonymous SNV 0.997 1 36 hm5C_associated_SNPs_37024 0 0 0 0 0 Ribosome 1 0.500231643926696 1 0.999536712146608 hm5C_site_36586 DeepMRMD:1;iRNA_m5C:0.999536712146608 36587 chr20 44469671 44469671 1 + C T STAD 44469670 + 44469650 44469690 41 GGCACCCCCTCTGGCCCAGACCGCCCCCTGCTGACCCTGGC GGCACCCCCTCTGGCCCAGACTGCCCCCTGCTGACCCTGGC < 41bp 1 0.440457764166978 1 0.191939532756805 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX21 ENSG00000124104 CDS Human protein_coding chr20:44469670 chr20:44469671 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_37025 0 0 0 0 0 Ribosome 1 0.500231643921087 1 0.999536712157825 hm5C_site_36587 DeepMRMD:1;iRNA_m5C:0.999536712157825 36588 chr18 74631811 74631811 1 + G A STAD 74631822 + 74631802 74631842 41 CACTTTCACGGAGGAGGAGACAGCCCAGTTAGCCAAGATCC CACTTTCACAGAGGAGGAGACAGCCCAGTTAGCCAAGATCC < 41bp 1 0.29566892777303 1 0.279817700386047 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74631822 chr18:74631811 synonymous SNV . 0 10 hm5C_associated_SNPs_37026 0 0 1 0 1 Cytosol 1 0.50023169325612 1 0.999536613487761 hm5C_site_36588 DeepMRMD:1;iRNA_m5C:0.999536613487761 36589 chr8 99019731 99019731 1 + A G STAD 99019717 + 99019697 99019737 41 GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGACCATGG GGTTTTGCAGGGGTGGATTACTGCCTGCTGAGTGGCCATGG < 41bp 1 0.617641713887239 1 0.083000510931015 experiment 0.764716572225522 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019717 chr8:99019731 nonsynonymous SNV 0.861 0 35 hm5C_associated_SNPs_37027 0 0 0 0 2 Cytosol 1 0.500231644102144 1 0.999536711795711 hm5C_site_36589 DeepMRMD:1;iRNA_m5C:0.999536711795711 36590 chrX 73046077 73046077 1 + C T STAD 73046069 - 73046049 73046089 41 GGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGA GGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATGTGAAGA < 41bp 1 0.214629444979524 1 0.792411208152771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046069 chrX:73046077 . . 0 13 hm5C_associated_SNPs_37028 0 0 1 10 0 unknown 1 0.500231645184923 0.415177583694458 0.999536709630154 hm5C_site_36590 DeepMRMD:0.415177583694458;iRNA_m5C:0.999536709630154 36591 chrX 73046077 73046077 1 + C T STAD 73046075 - 73046055 73046095 41 TGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATG TGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAATG < 41bp 1 0.304461681253248 1 0.437959045171738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046075 chrX:73046077 . . 0 19 hm5C_associated_SNPs_37029 0 0 1 10 0 unknown 1 0.500231643919634 1 0.999536712160733 hm5C_site_36591 DeepMRMD:1;iRNA_m5C:0.999536712160733 36592 chrX 73046077 73046077 1 + C T STAD 73046076 - 73046056 73046096 41 TTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAAT TTGTTGGGGAAAAAAAAGTACCAGGCTCTCTAGAGAAAAAT < 41bp 1 0.137346435965371 1 0.136719018220901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046076 chrX:73046077 . . 0 20 hm5C_associated_SNPs_37030 0 0 1 10 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_36592 DeepMRMD:1;iRNA_m5C:0.999536712157815 36593 chr7 2472447 2472447 1 + G T STAD 2472435 + 2472415 2472455 41 GCCGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCA GCCGCTGCCCACGCCCGGGCCGGACAGGGACATGGAGCTCA < 41bp 1 0.456523890224603 1 0.178840547800064 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472435 chr7:2472447 nonsynonymous SNV 0.000 1 33 hm5C_associated_SNPs_37031 0 0 0 0 0 nucleolus 1 0.500231643624259 1 0.999536712751482 hm5C_site_36593 DeepMRMD:1;iRNA_m5C:0.999536712751482 36594 chr2 73151580 73151580 1 + G A STAD 73151590 + 73151570 73151610 41 TGGGCGCCGAGCGGAAGCAGCTGGCCGGCAGTCTCAGCCTC TGGGCGCCGAACGGAAGCAGCTGGCCGGCAGTCTCAGCCTC < 41bp 1 0.591815271000329 1 0.226331233978271 experiment 0.816369457999341 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EMX1 ENSG00000135638 CDS Human protein_coding chr2:73151590 chr2:73151580 synonymous SNV 1.000 0 11 hm5C_associated_SNPs_37032 0 0 0 0 1 exosome 1 0.500231644005722 1 0.999536711988555 hm5C_site_36594 DeepMRMD:1;iRNA_m5C:0.999536711988555 36595 chr2 152273371 152273371 1 + G A STAD 152273359 + 152273339 152273379 41 TCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGC TCATTAGAAATACTGTTTAACAAAGGAGAGACACATTCTGC < 41bp 1 0.288221777501662 1 0.53180330991745 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152273359 chr2:152273371 synonymous SNV . 0 33 hm5C_associated_SNPs_37033 0 0 1 0 2 Nucleus 1 0.500231018327862 0.9363933801651 0.999537963344276 hm5C_site_36595 DeepMRMD:0.9363933801651;iRNA_m5C:0.999537963344276 36596 chr16 74330861 74330861 1 + C T STAD 74330876 + 74330856 74330896 41 TGCTGCTCAGTGTGGTGGATCATTTCAACCGGTGAGCGAGC TGCTGTTCAGTGTGGTGGATCATTTCAACCGGTGAGCGAGC < 41bp 1 0.141850522436852 1 0.0291808843612671 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74330876 chr16:74330861 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_37034 0 0 1 0 1 Ribosome 1 0.500231643704069 1 0.999536712591862 hm5C_site_36596 DeepMRMD:1;iRNA_m5C:0.999536712591862 36597 chr2 219616528 219616528 1 + A C STAD 219616527 + 219616507 219616547 41 TGACCCAGAAAATTCCTGATCAGGTAGGAGATTGGTCTTCC TGACCCAGAAAATTCCTGATCCGGTAGGAGATTGGTCTTCC < 41bp 1 0.22893749338815 1 0.177618682384491 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219616527 chr2:219616528 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_37035 0 0 1 0 1 Cytosol 1 0.500231643921061 1 0.999536712157879 hm5C_site_36597 DeepMRMD:1;iRNA_m5C:0.999536712157879 36598 chr17 43220923 43220923 1 + G A STAD 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGAACCCAAAAG < 41bp 1 0.386871864179408 1 0.792316794395447 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220923 nonsynonymous SNV 0.994 1 32 hm5C_associated_SNPs_37036 0 0 1 0 0 Cytosol 1 0.500231639385665 0.415366411209106 0.99953672122867 hm5C_site_36598 DeepMRMD:0.415366411209106;iRNA_m5C:0.99953672122867 36599 chr1 52870494 52870494 1 + A G STAD 52870493 + 52870473 52870513 41 CAATATCTGGTGGAGAAGATCATTCGAACGCGAATCTATGA CAATATCTGGTGGAGAAGATCGTTCGAACGCGAATCTATGA < 41bp 1 0.163208936145729 1 0.124238401651382 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52870493 chr1:52870494 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_37037 0 0 1 0 1 Ribosome 1 0.500231198432645 1 0.999537603134709 hm5C_site_36599 DeepMRMD:1;iRNA_m5C:0.999537603134709 36600 chr11 9456521 9456521 1 + A G STAD 9456531 + 9456511 9456551 41 CAGTTGATACAGACACACTTCTGTCTGACACCAAGTATCTT CAGTTGATACGGACACACTTCTGTCTGACACCAAGTATCTT < 41bp 1 0.169850922268985 1 0.0737857222557068 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9456531 chr11:9456521 synonymous SNV . 0 11 hm5C_associated_SNPs_37038 0 0 1 0 2 Cytosol 1 0.50024891905332 1 0.99950216189336 hm5C_site_36600 DeepMRMD:1;iRNA_m5C:0.99950216189336 36601 chr12 113379472 113379472 1 + C T STAD 113379481 + 113379461 113379501 41 GGACCAGAGGGCCCGCCGTGCAGAGATCCTCAGTGAGATGC GGACCAGAGGGTCCGCCGTGCAGAGATCCTCAGTGAGATGC < 41bp 1 0.578217394711029 1 0.233223915100098 experiment 0.843565210577942 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113379481 chr12:113379472 nonsynonymous SNV 0.002 0 12 hm5C_associated_SNPs_37039 0 0 1 0 1 Nucleus 1 0.500231642238583 1 0.999536715522834 hm5C_site_36601 DeepMRMD:1;iRNA_m5C:0.999536715522834 36602 chr6 31599957 31599957 1 + C T STAD 31599963 + 31599943 31599983 41 GGGGTGCCATCTCGCCGGGGCCGAGGAGGAGGGAGGCCCCC GGGGTGCCATCTCGTCGGGGCCGAGGAGGAGGGAGGCCCCC < 41bp 1 0.398383042103977 1 0.785210907459259 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31599963 chr6:31599957 synonymous SNV . 0 15 hm5C_associated_SNPs_37042 0 0 1 0 0 Ribosome 1 0.500231643922609 0.429578185081482 0.999536712154782 hm5C_site_36602 DeepMRMD:0.429578185081482;iRNA_m5C:0.999536712154782 36603 chr1 45244276 45244276 1 + T C STAD 45244279 + 45244259 45244299 41 TCAAGGCCGGGACAGTGTGGCCGAGCAGATGGCTATGTGCT TCAAGGCCGGGACAGTGCGGCCGAGCAGATGGCTATGTGCT < 41bp 1 0.243717753335426 1 0.35460153222084 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45244279 chr1:45244276 synonymous SNV . 0 18 hm5C_associated_SNPs_37043 0 0 1 0 0 Cytosol 1 0.500231643927591 1 0.999536712144818 hm5C_site_36603 DeepMRMD:1;iRNA_m5C:0.999536712144818 36604 chr1 45244276 45244276 1 + T C STAD 45244284 + 45244264 45244304 41 GCCGGGACAGTGTGGCCGAGCAGATGGCTATGTGCTAGAGG GCCGGGACAGTGCGGCCGAGCAGATGGCTATGTGCTAGAGG < 41bp 1 0.6167746221083 1 0.341871380805969 experiment 0.766450755783399 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45244284 chr1:45244276 synonymous SNV . 0 13 hm5C_associated_SNPs_37044 0 0 1 0 0 Cytosol 1 0.500231644165145 1 0.99953671166971 hm5C_site_36604 DeepMRMD:1;iRNA_m5C:0.99953671166971 36605 chr16 22271788 22271788 1 + C T STAD 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGTCAGTGTTCAGTGACCTCGATAACATGGC < 41bp 1 0.330911833283654 1 0.617003500461578 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271788 nonsynonymous SNV 0.987 1 13 hm5C_associated_SNPs_37045 0 0 1 2 2 Nucleus 1 0.50023100542469 0.765992999076844 0.999537989150621 hm5C_site_36605 DeepMRMD:0.765992999076844;iRNA_m5C:0.999537989150621 36606 chr16 57486772 57486772 1 + A G STAD 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCGCCGCATCCTGACGGCAGCCCTT < 41bp 1 0.564958284312757 1 0.730299353599548 experiment 0.870083431374487 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486772 nonsynonymous SNV 0.974 0 19 hm5C_associated_SNPs_37046 0 0 1 0 2 Ribosome 1 0.500231643921085 0.539401292800904 0.999536712157831 hm5C_site_36606 DeepMRMD:0.539401292800904;iRNA_m5C:0.999536712157831 36607 chr3 129197018 129197018 1 + G A STAD 129197026 + 129197006 129197046 41 AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGCCAATCAC AGAAGTTTGAGTACAACCTCCTGGTGGTGTGTGCCAATCAC < 41bp 1 0.601713678895449 1 0.218000203371048 experiment 0.796572642209102 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT122 ENSG00000163913 CDS Human protein_coding chr3:129197026 chr3:129197018 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_37047 0 0 1 1 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36607 DeepMRMD:1;iRNA_m5C:0.999536712157815 36608 chr10 81841641 81841641 1 + G A STAD 81841623 + 81841603 81841643 41 GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCC GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGACC < 41bp 1 0.294358058153306 1 0.0242936015129089 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM254 ENSG00000133678 CDS Human protein_coding chr10:81841623 chr10:81841641 synonymous SNV 0.601 1 39 hm5C_associated_SNPs_37048 0 0 1 0 2 Endoplasmic reticulum 1 0.500238103087996 1 0.999523793824008 hm5C_site_36608 DeepMRMD:1;iRNA_m5C:0.999523793824008 36609 chr2 10560033 10560033 1 + G A STAD 10560051 + 10560031 10560071 41 AAGATCTACGCCAACTTCTTCCCCTACGGCGACGCTTCCAA AAAATCTACGCCAACTTCTTCCCCTACGGCGACGCTTCCAA < 41bp 1 0.100943469723138 1 0.161537379026413 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10560051 chr2:10560033 synonymous SNV . 0 3 hm5C_associated_SNPs_37049 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36609 DeepMRMD:1;iRNA_m5C:0.999536712157815 36610 chr19 13054412 13054412 1 + A G STAD 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTGAGGGGTTTGGCAACGA < 41bp 1 0.62981161446094 1 0.175479799509048 experiment 0.740376771078119 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054412 nonsynonymous SNV 0.948 2 29 hm5C_associated_SNPs_37050 0 0 1 0 2 Ribosome 1 0.500231664320684 1 0.999536671358632 hm5C_site_36610 DeepMRMD:1;iRNA_m5C:0.999536671358632 36611 chr19 13054412 13054412 1 + A G STAD 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGGGTTTGGCAACGAGACGTGGGGCGTAAC < 41bp 1 0.693804095476867 1 0.85487961769104 experiment 0.612391809046267 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054412 nonsynonymous SNV 0.948 2 14 hm5C_associated_SNPs_37052 0 0 1 0 2 Ribosome 1 0.500231641935736 0.29024076461792 0.999536716128527 hm5C_site_36611 DeepMRMD:0.29024076461792;iRNA_m5C:0.999536716128527 36612 chr19 13054412 13054412 1 + A G STAD 13054427 + 13054407 13054447 41 TGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA TGAGGGGTTTGGCAACGAGACGTGGGGCGTAACAAAGGTGA < 41bp 1 0.697585366724662 1 0.466041207313538 experiment 0.604829266550676 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054427 chr19:13054412 nonsynonymous SNV 0.948 2 6 hm5C_associated_SNPs_37053 0 0 1 0 2 Ribosome 1 0.500231644018915 1 0.99953671196217 hm5C_site_36612 DeepMRMD:1;iRNA_m5C:0.99953671196217 36613 chr19 1434841 1434841 1 + C T STAD 1434836 + 1434816 1434856 41 TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG TCCGTGCCAGGGTCGGGGGGCCCCCTCGCCGGCGGCAGCGG < 41bp 1 0.365443472476637 1 0.1053446829319 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434836 chr19:1434841 nonsynonymous SNV 0.938 2 26 hm5C_associated_SNPs_37054 0 0 1 0 0 chromatin 1 0.500231643878122 1 0.999536712243757 hm5C_site_36613 DeepMRMD:1;iRNA_m5C:0.999536712243757 36614 chr19 1434841 1434841 1 + C T STAD 1434837 + 1434817 1434857 41 CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC CCGTGCCAGGGTCGGGGGGCCCCCTCGCCGGCGGCAGCGGC < 41bp 1 0.46744847435043 1 0.0850081741809845 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434837 chr19:1434841 nonsynonymous SNV 0.938 2 25 hm5C_associated_SNPs_37055 0 0 1 0 0 chromatin 1 0.50023164020863 1 0.99953671958274 hm5C_site_36614 DeepMRMD:1;iRNA_m5C:0.99953671958274 36615 chr19 1434841 1434841 1 + C T STAD 1434838 + 1434818 1434858 41 CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT CGTGCCAGGGTCGGGGGGCCCCCTCGCCGGCGGCAGCGGCT < 41bp 1 0.295507041089439 1 0.148736029863358 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434838 chr19:1434841 nonsynonymous SNV 0.938 2 24 hm5C_associated_SNPs_37056 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_36615 DeepMRMD:1;iRNA_m5C:0.999536712157816 36616 chr19 1434841 1434841 1 + C T STAD 1434839 + 1434819 1434859 41 GTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCTT GTGCCAGGGTCGGGGGGCCCCCTCGCCGGCGGCAGCGGCTT < 41bp 1 0.49560952929762 1 0.0840989947319031 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434839 chr19:1434841 nonsynonymous SNV 0.938 2 23 hm5C_associated_SNPs_37057 0 0 1 0 0 chromatin 1 0.500231993998618 1 0.999536012002765 hm5C_site_36616 DeepMRMD:1;iRNA_m5C:0.999536012002765 36617 chr6 96976501 96976501 1 + A G STAD 96976482 + 96976462 96976502 41 GCTCGACATAAAGCACGTATCCGTGGACTATTCAGTGCTAT GCTCGACATAAAGCACGTATCCGTGGACTATTCAGTGCTGT < 41bp 1 0.418287265699688 1 0.418779671192169 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UFL1 ENSG00000014123 CDS Human protein_coding chr6:96976482 chr6:96976501 nonsynonymous SNV 0.950 0 40 hm5C_associated_SNPs_37058 0 0 1 0 1 Endoplasmic reticulum 1 0.5002286623984 1 0.9995426752032 hm5C_site_36617 DeepMRMD:1;iRNA_m5C:0.9995426752032 36618 chr6 96976501 96976501 1 + A G STAD 96976507 + 96976487 96976527 41 GACTATTCAGTGCTATTACCCGGTAAGTATATTTTAAAGTA GACTATTCAGTGCTGTTACCCGGTAAGTATATTTTAAAGTA < 41bp 1 0.654026484719613 1 0.346059799194336 experiment 0.691947030560774 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UFL1 ENSG00000014123 CDS Human protein_coding chr6:96976507 chr6:96976501 nonsynonymous SNV 0.950 0 15 hm5C_associated_SNPs_37059 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36618 DeepMRMD:1;iRNA_m5C:0.999536712157815 36619 chr5 145613207 145613207 1 + C T STAD 145613194 + 145613174 145613214 41 GGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCCAGGCCC GGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCTCAGGCCC < 41bp 1 0.661756894511731 1 0.176046937704086 experiment 0.676486210976538 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613194 chr5:145613207 nonsynonymous SNV 0.158 2 34 hm5C_associated_SNPs_37062 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36619 DeepMRMD:1;iRNA_m5C:0.999536712157815 36620 chr5 145613207 145613207 1 + C T STAD 145613195 + 145613175 145613215 41 GTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCCCAGGCCCG GTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGCTCAGGCCCG < 41bp 1 0.659865552769643 1 0.242183119058609 experiment 0.680268894460715 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613195 chr5:145613207 nonsynonymous SNV 0.158 2 33 hm5C_associated_SNPs_37063 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36620 DeepMRMD:1;iRNA_m5C:0.999536712157815 36621 chr5 145613207 145613207 1 + C T STAD 145613214 + 145613194 145613234 41 CCCAGGTCCAGGCCCAGGCCCGGGCCCAGGTCCAGGTCCTG CCCAGGTCCAGGCTCAGGCCCGGGCCCAGGTCCAGGTCCTG < 41bp 1 0.652796552462008 1 0.725239872932434 experiment 0.694406895075983 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM27 ENSG00000091009 CDS Human protein_coding chr5:145613214 chr5:145613207 nonsynonymous SNV 0.158 2 14 hm5C_associated_SNPs_37065 0 0 0 0 1 Nucleus 1 0.500231643921092 0.549520254135132 0.999536712157815 hm5C_site_36621 DeepMRMD:0.549520254135132;iRNA_m5C:0.999536712157815 36622 chr2 65299970 65299970 1 + C T STAD 65299976 + 65299956 65299996 41 AGCAGCCAGGCCCTCGGGGTCTCCTCTGGACTGCTGAAAAC AGCAGCCAGGCCCTTGGGGTCTCCTCTGGACTGCTGAAAAC < 41bp 1 0.453652091862138 1 0.547301471233368 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP68 ENSG00000011523 CDS Human protein_coding chr2:65299976 chr2:65299970 synonymous SNV . 0 15 hm5C_associated_SNPs_37067 0 0 0 0 0 Cytosol 1 0.500231643921111 0.905397057533264 0.999536712157778 hm5C_site_36622 DeepMRMD:0.905397057533264;iRNA_m5C:0.999536712157778 36623 chr2 236877258 236877258 1 + A G STAD 236877245 + 236877225 236877265 41 ACTAGCAACTTCAAAGCCGACGGCCTGTCCGGCACTGCTGA ACTAGCAACTTCAAAGCCGACGGCCTGTCCGGCGCTGCTGA < 41bp 1 0.168265685942006 1 0.532856225967407 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236877245 chr2:236877258 nonsynonymous SNV 0.994 0 34 hm5C_associated_SNPs_37068 0 0 1 0 1 Nucleus 1 0.500231643921092 0.934287548065186 0.999536712157815 hm5C_site_36623 DeepMRMD:0.934287548065186;iRNA_m5C:0.999536712157815 36624 chr2 236877258 236877258 1 + A G STAD 236877249 + 236877229 236877269 41 GCAACTTCAAAGCCGACGGCCTGTCCGGCACTGCTGAAGGT GCAACTTCAAAGCCGACGGCCTGTCCGGCGCTGCTGAAGGT < 41bp 1 0.0401066231740038 1 0.0978343486785889 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236877249 chr2:236877258 nonsynonymous SNV 0.994 0 30 hm5C_associated_SNPs_37069 0 0 1 0 1 Nucleus 1 0.500231643915845 1 0.999536712168309 hm5C_site_36624 DeepMRMD:1;iRNA_m5C:0.999536712168309 36625 chr9 135942495 135942495 1 + C T STAD 135942479 + 135942459 135942499 41 TTGGTTCTGCCCCCAGGTGGCTGAGAAGGTGGGTTGCCCTG TTGGTTCTGCCCCCAGGTGGCTGAGAAGGTGGGTTGTCCTG < 41bp 1 0.501928433262387 1 0.220997393131256 experiment 0.996143133475226 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942479 chr9:135942495 synonymous SNV . 0 37 hm5C_associated_SNPs_37070 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36625 DeepMRMD:1;iRNA_m5C:0.999536712157815 36626 chr9 135942495 135942495 1 + C T STAD 135942496 + 135942476 135942516 41 TGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGG TGGCTGAGAAGGTGGGTTGTCCTGTGGGTGATGCCGCCAGG < 41bp 1 0.273677743235752 1 0.296988636255264 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942496 chr9:135942495 synonymous SNV . 0 20 hm5C_associated_SNPs_37071 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_36626 DeepMRMD:1;iRNA_m5C:0.999536712157816 36627 chr9 135942495 135942495 1 + C T STAD 135942497 + 135942477 135942517 41 GGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA GGCTGAGAAGGTGGGTTGTCCTGTGGGTGATGCCGCCAGGA < 41bp 1 0.560199328924549 1 0.78011429309845 experiment 0.879601342150901 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942497 chr9:135942495 synonymous SNV . 0 19 hm5C_associated_SNPs_37072 0 0 0 0 1 exosome 1 0.500231644074479 0.4397714138031 0.999536711851043 hm5C_site_36627 DeepMRMD:0.4397714138031;iRNA_m5C:0.999536711851043 36628 chr9 135942495 135942495 1 + C T STAD 135942509 + 135942489 135942529 41 GGGTTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTC GGGTTGTCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTC < 41bp 1 0.184388806450164 1 0.135827720165253 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942509 chr9:135942495 synonymous SNV . 0 7 hm5C_associated_SNPs_37073 0 0 0 0 1 exosome 1 0.500231643921074 1 0.999536712157852 hm5C_site_36628 DeepMRMD:1;iRNA_m5C:0.999536712157852 36629 chr9 135942495 135942495 1 + C T STAD 135942512 + 135942492 135942532 41 TTGCCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTCTGA TTGTCCTGTGGGTGATGCCGCCAGGATGGCCCAGTGTCTGA < 41bp 1 0.468851972681602 1 0.466135501861572 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942512 chr9:135942495 synonymous SNV . 0 4 hm5C_associated_SNPs_37074 0 0 0 0 1 exosome 1 0.500231218035261 1 0.999537563929478 hm5C_site_36629 DeepMRMD:1;iRNA_m5C:0.999537563929478 36630 chr3 179424791 179424791 1 + G A STAD 179424778 + 179424758 179424798 41 TCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAATGA TCTCCATACAGAAAGCAGGACCCAGACACGTGGAAAAATGA < 41bp 1 0.0444499651464382 1 0.0755840241909027 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179424778 chr3:179424791 nonsynonymous SNV 0.963 2 34 hm5C_associated_SNPs_37075 0 0 0 0 2 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_36630 DeepMRMD:1;iRNA_m5C:0.999536712157814 36631 chr12 56335328 56335328 1 + C T STAD 56335343 + 56335323 56335363 41 ACCCTCGACAGGTGTTCAACCTCCTAAAGGATGGTCCTGAG ACCCTTGACAGGTGTTCAACCTCCTAAAGGATGGTCCTGAG < 41bp 1 0.691139184549612 1 0.438083738088608 experiment 0.617721630900776 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DGKA ENSG00000065357 CDS Human protein_coding chr12:56335343 chr12:56335328 stopgain 0.993 1 6 hm5C_associated_SNPs_37076 0 0 0 0 0 Cytosol 1 0.500231569565341 1 0.999536860869319 hm5C_site_36631 DeepMRMD:1;iRNA_m5C:0.999536860869319 36632 chr17 33592742 33592742 1 + C T STAD 33592726 + 33592706 33592746 41 GTTACTACAGATCGGTGATGCGTCGGATGTTCTAACCGATC GTTACTACAGATCGGTGATGCGTCGGATGTTCTAACTGATC < 41bp 1 0.345579998635738 1 0.371896028518677 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLFN5 ENSG00000166750 CDS Human protein_coding chr17:33592726 chr17:33592742 synonymous SNV . 0 37 hm5C_associated_SNPs_37077 0 0 0 0 0 nucleus 1 0.500231643874464 1 0.999536712251073 hm5C_site_36632 DeepMRMD:1;iRNA_m5C:0.999536712251073 36633 chr7 142458458 142458458 1 + G T STAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTACAACTGTGATGAGAATTC < 41bp 1 0.358898543541533 1 0.362715363502502 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458458 nonsynonymous SNV 0.012 1 33 hm5C_associated_SNPs_37078 0 0 0 0 1 Cytosol 1 0.500231644033423 1 0.999536711933153 hm5C_site_36633 DeepMRMD:1;iRNA_m5C:0.999536711933153 36634 chr7 142458458 142458458 1 + G T STAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTACAACTGTGATGAGAATTCTGT < 41bp 1 0.158972420722885 1 0.205683827400208 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458458 nonsynonymous SNV 0.012 1 30 hm5C_associated_SNPs_37079 0 0 0 0 1 Cytosol 1 0.500231643908157 1 0.999536712183686 hm5C_site_36634 DeepMRMD:1;iRNA_m5C:0.999536712183686 36635 chr7 142458458 142458458 1 + G T STAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGATGAGAATTCTGTCCC < 41bp 1 0.470071031039627 1 0.370504945516586 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458458 nonsynonymous SNV 0.012 1 27 hm5C_associated_SNPs_37080 0 0 0 0 1 Cytosol 1 0.500231673491541 1 0.999536653016918 hm5C_site_36635 DeepMRMD:1;iRNA_m5C:0.999536653016918 36636 chr7 142458458 142458458 1 + G T STAD 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGATGAGAATTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.124783428157239 1 0.146887421607971 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458458 nonsynonymous SNV 0.012 1 13 hm5C_associated_SNPs_37081 0 0 0 0 1 Cytosol 1 0.500231643921753 1 0.999536712156493 hm5C_site_36636 DeepMRMD:1;iRNA_m5C:0.999536712156493 36637 chr7 142458458 142458458 1 + G T STAD 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGATGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA < 41bp 1 0.110738371617884 1 0.106268376111984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458458 nonsynonymous SNV 0.012 1 9 hm5C_associated_SNPs_37082 0 0 0 0 1 Cytosol 1 0.500231643921079 1 0.999536712157842 hm5C_site_36637 DeepMRMD:1;iRNA_m5C:0.999536712157842 36638 chr7 142458458 142458458 1 + G T STAD 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGATGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.0978954733781484 1 0.0684765875339508 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458458 nonsynonymous SNV 0.012 1 8 hm5C_associated_SNPs_37083 0 0 0 0 1 Cytosol 1 0.500231643743197 1 0.999536712513606 hm5C_site_36638 DeepMRMD:1;iRNA_m5C:0.999536712513606 36639 chr7 142458458 142458458 1 + G T STAD 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGATGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.0127733661051499 1 0.0828461647033691 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458458 nonsynonymous SNV 0.012 1 7 hm5C_associated_SNPs_37084 0 0 0 0 1 Cytosol 1 0.500231643920759 1 0.999536712158481 hm5C_site_36639 DeepMRMD:1;iRNA_m5C:0.999536712158481 36640 chr7 142458458 142458458 1 + G T STAD 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGATGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.137281464757947 1 0.0524804890155792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458458 nonsynonymous SNV 0.012 1 6 hm5C_associated_SNPs_37085 0 0 0 0 1 Cytosol 1 0.500231643922846 1 0.999536712154307 hm5C_site_36640 DeepMRMD:1;iRNA_m5C:0.999536712154307 36641 chr7 142458458 142458458 1 + G T STAD 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GATGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.25177536614935 1 0.302619934082031 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458458 nonsynonymous SNV 0.012 1 3 hm5C_associated_SNPs_37086 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36641 DeepMRMD:1;iRNA_m5C:0.999536712157815 36642 chr7 142458458 142458458 1 + G T STAD 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC ATGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.622613391667868 1 0.837264537811279 experiment 0.754773216664265 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458458 nonsynonymous SNV 0.012 1 2 hm5C_associated_SNPs_37087 0 0 0 0 1 Cytosol 1 0.500231633063957 0.325470924377442 0.999536733872087 hm5C_site_36642 DeepMRMD:0.325470924377442;iRNA_m5C:0.999536733872087 36643 chr12 56862392 56862392 1 + C A STAD 56862382 + 56862362 56862402 41 ATCCAAGGCGCAAGATGGCGCTGCTTTTTGCACGTTCTTTG ATCCAAGGCGCAAGATGGCGCTGCTTTTTGAACGTTCTTTG < 41bp 1 0.55713180899732 1 0.0738604962825775 experiment 0.88573638200536 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPRYD4 ENSG00000176422 CDS Human protein_coding chr12:56862382 chr12:56862392 nonsynonymous SNV 0.228 1 31 hm5C_associated_SNPs_37088 0 0 1 0 1 Cytosol 1 0.500231643303418 1 0.999536713393165 hm5C_site_36643 DeepMRMD:1;iRNA_m5C:0.999536713393165 36644 chr7 91708840 91708840 1 + C G STAD 91708830 + 91708810 91708850 41 ATAGATCATCTGAGCAAAGACAAACCTGAACTAGAAGTAGT ATAGATCATCTGAGCAAAGACAAACCTGAAGTAGAAGTAGT < 41bp 1 0.062289113415901 1 0.23994505405426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91708830 chr7:91708840 nonsynonymous SNV 0.004 0 31 hm5C_associated_SNPs_37089 0 0 1 0 0 Nucleus 1 0.500231678910336 1 0.999536642179328 hm5C_site_36644 DeepMRMD:1;iRNA_m5C:0.999536642179328 36645 chr7 116165076 116165076 1 + A T STAD 116165070 + 116165050 116165090 41 TCCTCAGTTCCCTTAAAGCACAGCCCAGGGAAACCTCCTCA TCCTCAGTTCCCTTAAAGCACAGCCCTGGGAAACCTCCTCA < 41bp 1 0.212111269851079 1 0.025777131319046 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 UTR5 Human protein_coding chr7:116165070 chr7:116165076 . . 0 27 hm5C_associated_SNPs_37090 0 0 0 0 1 Ribosome 1 0.500231654396747 1 0.999536691206507 hm5C_site_36645 DeepMRMD:1;iRNA_m5C:0.999536691206507 36646 chr7 116165076 116165076 1 + A T STAD 116165075 + 116165055 116165095 41 AGTTCCCTTAAAGCACAGCCCAGGGAAACCTCCTCACAGTT AGTTCCCTTAAAGCACAGCCCTGGGAAACCTCCTCACAGTT < 41bp 1 0.510920507499848 1 0.78584098815918 experiment 0.978158985000304 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 UTR5 Human protein_coding chr7:116165075 chr7:116165076 . . 0 22 hm5C_associated_SNPs_37091 0 0 0 0 1 Ribosome 1 0.500231643921092 0.42831802368164 0.999536712157815 hm5C_site_36646 DeepMRMD:0.42831802368164;iRNA_m5C:0.999536712157815 36647 chr1 145304580 145304580 1 + G C STAD 145304596 + 145304576 145304616 41 GGAAGACAAAGTCGACTCAACTCTCATTGGCTCATCCTCTC GGAACACAAAGTCGACTCAACTCTCATTGGCTCATCCTCTC < 41bp 1 0.0737349598866922 1 0.0357876121997833 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBPF10 ENSG00000163386 CDS Human other chr1:145304596 chr1:145304580 nonsynonymous SNV 0.001 2 5 hm5C_associated_SNPs_37092 0 0 0 0 0 chromatin 1 0.50023183044311 1 0.999536339113779 hm5C_site_36647 DeepMRMD:1;iRNA_m5C:0.999536339113779 36648 chr20 1902326 1902326 1 + G A STAD 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACGTCACCTTGCAGGGGGACCCTCTTCATGGGACTGCCAAC < 41bp 1 0.0613196008334651 1 0.0154024660587311 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902326 nonsynonymous SNV 0.937 1 28 hm5C_associated_SNPs_37093 0 0 0 0 1 Nucleus 1 0.500231643988487 1 0.999536712023027 hm5C_site_36648 DeepMRMD:1;iRNA_m5C:0.999536712023027 36649 chr17 60769610 60769610 1 + C T STAD 60769607 + 60769587 60769627 41 GGCAGCGCTTCCAGAGAACCCAGCGGCCCTGGTGGTGGTGC GGCAGCGCTTCCAGAGAACCCAGTGGCCCTGGTGGTGGTGC < 41bp 1 0.464564092619115 1 0.418288171291351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60769607 chr17:60769610 nonsynonymous SNV 0.653 0 24 hm5C_associated_SNPs_37094 0 0 0 0 1 Cytosol 1 0.500231643866724 1 0.999536712266552 hm5C_site_36649 DeepMRMD:1;iRNA_m5C:0.999536712266552 36650 chr6 44219805 44219805 1 + T C STAD 44219794 + 44219774 44219814 41 GAGCGAGTGCGGAAACGGGGCTTCGAGGTGGTATATATGAC GAGCGAGTGCGGAAACGGGGCTTCGAGGTGGCATATATGAC < 41bp 1 0.194215933267944 1 0.274162858724594 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219794 chr6:44219805 nonsynonymous SNV 0.996 1 32 hm5C_associated_SNPs_37095 0 0 1 0 1 Nucleus 1 0.500231615958502 1 0.999536768082996 hm5C_site_36650 DeepMRMD:1;iRNA_m5C:0.999536768082996 36651 chr6 44219805 44219805 1 + T C STAD 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCGAGGTGGCATATATGACCGAGCCCATTGACGAGTACT < 41bp 1 0.394788560748707 1 0.198191612958908 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219805 nonsynonymous SNV 0.996 1 12 hm5C_associated_SNPs_37096 0 0 1 0 1 Nucleus 1 0.500231919231689 1 0.999536161536623 hm5C_site_36651 DeepMRMD:1;iRNA_m5C:0.999536161536623 36652 chr2 85770889 85770889 1 + A G STAD 85770875 + 85770855 85770895 41 ACAGCTTCCCATGGGAAGTGCCCAAAAAGCTTAAATATTGA ACAGCTTCCCATGGGAAGTGCCCAAAAAGCTTAAGTATTGA < 41bp 1 0.210300370553231 1 0.2429538667202 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770875 chr2:85770889 synonymous SNV . 0 35 hm5C_associated_SNPs_37097 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36652 DeepMRMD:1;iRNA_m5C:0.999536712157815 36653 chr16 24580551 24580551 1 + C T STAD 24580557 + 24580537 24580577 41 TAAAGGTTATGCTGCTGGAGCACAGCCTAGACCCTCAGCAA TAAAGGTTATGCTGTTGGAGCACAGCCTAGACCCTCAGCAA < 41bp 1 0.264229940128519 1 0.347281336784363 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBBP6 ENSG00000122257 CDS Human protein_coding chr16:24580557 chr16:24580551 nonsynonymous SNV 0.975 0 15 hm5C_associated_SNPs_37098 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36653 DeepMRMD:1;iRNA_m5C:0.999536712157815 36654 chr13 22246320 22246320 1 + G T STAD 22246318 + 22246298 22246338 41 CAGGGAACCAGGAAAGACCACAGCCGATTTGGTAGGTATAC CAGGGAACCAGGAAAGACCACATCCGATTTGGTAGGTATAC < 41bp 1 0.125691353469799 1 0.0758495628833771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF9 ENSG00000102678 CDS Human protein_coding chr13:22246318 chr13:22246320 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_37099 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_36654 DeepMRMD:1;iRNA_m5C:0.999536712157814 36655 chr1 20234226 20234226 1 + C T STAD 20234221 + 20234201 20234241 41 GTCACCTTGGTGAAGACCTTCGCCGCTCTCAACATCTGACT GTCACCTTGGTGAAGACCTTCGCCGTTCTCAACATCTGACT < 41bp 1 0.673211687872901 1 0.0624816119670868 experiment 0.653576624254198 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20234221 chr1:20234226 nonsynonymous SNV 0.997 3 26 hm5C_associated_SNPs_37100 0 0 1 0 0 Cytosol 1 0.500231658106636 1 0.999536683786728 hm5C_site_36655 DeepMRMD:1;iRNA_m5C:0.999536683786728 36656 chr12 53433109 53433109 1 + A G STAD 53433121 + 53433101 53433141 41 CAGAGACCACTGGAAGGAGTCAGATAGGTATGCTTGTTCTC CAGAGACCGCTGGAAGGAGTCAGATAGGTATGCTTGTTCTC < 41bp 1 0.578540695045111 1 0.788370370864868 experiment 0.842918609909778 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433121 chr12:53433109 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_37102 0 0 1 0 2 Cytosol 1 0.500233648724838 0.423259258270264 0.999532702550323 hm5C_site_36656 DeepMRMD:0.423259258270264;iRNA_m5C:0.999532702550323 36657 chr4 119200402 119200402 1 + A G STAD 119200383 + 119200363 119200403 41 CCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAG CCTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGG < 41bp 1 0.0995789843234293 1 0.217243641614914 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200383 chr4:119200402 . . 0 40 hm5C_associated_SNPs_37103 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_36657 DeepMRMD:1;iRNA_m5C:0.999536712157815 36658 chr4 119200402 119200402 1 + A G STAD 119200384 + 119200364 119200404 41 CTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGC CTGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGGC < 41bp 1 0.0211768432381916 1 0.129043459892273 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200384 chr4:119200402 . . 0 39 hm5C_associated_SNPs_37104 0 0 1 2 0 unknown 1 0.500231643921113 1 0.999536712157774 hm5C_site_36658 DeepMRMD:1;iRNA_m5C:0.999536712157774 36659 chr4 119200402 119200402 1 + A G STAD 119200385 + 119200365 119200405 41 TGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCA TGTCAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGGCA < 41bp 1 0.180411181618255 1 0.251942455768585 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200385 chr4:119200402 . . 0 38 hm5C_associated_SNPs_37105 0 0 1 2 0 unknown 1 0.500231643726196 1 0.999536712547607 hm5C_site_36659 DeepMRMD:1;iRNA_m5C:0.999536712547607 36660 chr4 119200402 119200402 1 + A G STAD 119200388 + 119200368 119200408 41 CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATAT CAGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGGCATAT < 41bp 1 0.054724979217271 1 0.486092805862427 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200388 chr4:119200402 . . 0 35 hm5C_associated_SNPs_37106 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_36660 DeepMRMD:1;iRNA_m5C:0.999536712157815 36661 chr4 119200402 119200402 1 + A G STAD 119200389 + 119200369 119200409 41 AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGAGCATATC AGCCGTGGCAGTCTCCCTTCCTAGCCATGGAAGGGCATATC < 41bp 1 0.263292732082161 1 0.0870583951473236 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200389 chr4:119200402 . . 0 34 hm5C_associated_SNPs_37107 0 0 1 2 0 unknown 1 0.500231643921052 1 0.999536712157896 hm5C_site_36661 DeepMRMD:1;iRNA_m5C:0.999536712157896 36662 chr22 39826124 39826124 1 + C T STAD 39826113 + 39826093 39826133 41 CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCTGCCTGGCGA < 41bp 1 0.112529994270136 1 0.193946152925491 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39826113 chr22:39826124 nonsynonymous SNV 0.322 1 32 hm5C_associated_SNPs_37108 0 0 1 0 0 Cytosol 1 0.500231638282547 1 0.999536723434907 hm5C_site_36662 DeepMRMD:1;iRNA_m5C:0.999536723434907 36663 chr10 71128383 71128383 1 + G A STAD 71128375 + 71128355 71128395 41 AAACTGCTTAACAAAGCCATCAAAAAGCGAGGGGTAATTTC AAACTGCTTAACAAAGCCATCAAAAAGCAAGGGGTAATTTC < 41bp 1 0.454053382364892 1 0.422480285167694 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HK1 ENSG00000156515 CDS Human protein_coding chr10:71128375 chr10:71128383 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_37109 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36663 DeepMRMD:1;iRNA_m5C:0.999536712157815 36664 chr19 50912103 50912103 1 + G T STAD 50912092 + 50912072 50912112 41 CTTCTCCTCGCTGTACCCGTCCATCATGATGGCCCACAACC CTTCTCCTCGCTGTACCCGTCCATCATGATGTCCCACAACC < 41bp 1 0.0259747551941437 1 0.0343663692474365 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912092 chr19:50912103 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_37110 0 0 1 0 2 Nucleus 1 0.500231553879459 1 0.999536892241081 hm5C_site_36664 DeepMRMD:1;iRNA_m5C:0.999536892241081 36665 chr19 35741260 35741260 1 + A G STAD 35741270 + 35741250 35741290 41 AACCCCTACCACGTGGTGATCCTCTTCCAGCCTGTGACCCT AACCCCTACCGCGTGGTGATCCTCTTCCAGCCTGTGACCCT < 41bp 1 0.106273437295245 1 0.0199342966079712 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741270 chr19:35741260 nonsynonymous SNV 0.906 0 11 hm5C_associated_SNPs_37111 0 0 1 0 2 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_36665 DeepMRMD:1;iRNA_m5C:0.999536712157818 36666 chrX 7171305 7171305 1 + C T STAD 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCTGAACATCATCCTGGTGATGGCTGACGA < 41bp 1 0.269003429463427 1 0.0493785440921783 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171305 nonsynonymous SNV 0.104 5 14 hm5C_associated_SNPs_37112 0 0 1 2 1 Cytosol 1 0.500231644038636 1 0.999536711922728 hm5C_site_36666 DeepMRMD:1;iRNA_m5C:0.999536711922728 36667 chr12 9070318 9070318 1 + T G STAD 9070333 + 9070313 9070353 41 GGGAGTTCTAGCTCAGGGGGCAGCTCTCGGCCCCAGATAGC GGGAGGTCTAGCTCAGGGGGCAGCTCTCGGCCCCAGATAGC < 41bp 1 0.224731865817502 1 0.177383482456207 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHC1 ENSG00000111752 CDS Human protein_coding chr12:9070333 chr12:9070318 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_37113 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36667 DeepMRMD:1;iRNA_m5C:0.999536712157815 36668 chr1 44684006 44684006 1 + G A STAD 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCAGAGCAGGAGTACCAGCTTTATCTCCACGATGAT < 41bp 1 0.515570946519049 1 0.293220221996307 experiment 0.968858106961902 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684006 synonymous SNV . 0 8 hm5C_associated_SNPs_37115 0 0 1 0 1 chromatin 1 0.500231643969529 1 0.999536712060942 hm5C_site_36668 DeepMRMD:1;iRNA_m5C:0.999536712060942 36669 chr3 126751404 126751404 1 + C T STAD 126751389 + 126751369 126751409 41 CTGGGCAAGGACTCACCCTCCAACAAGCTGCTCTACGCCAA CTGGGCAAGGACTCACCCTCCAACAAGCTGCTCTATGCCAA < 41bp 1 0.412942593026652 1 0.525306284427643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751389 chr3:126751404 synonymous SNV . 0 36 hm5C_associated_SNPs_37116 0 0 1 0 1 Ribosome 1 0.50023164392106 0.949387431144714 0.999536712157881 hm5C_site_36669 DeepMRMD:0.949387431144714;iRNA_m5C:0.999536712157881 36670 chr2 27598553 27598553 1 + C T STAD 27598533 + 27598513 27598553 41 CCAGCAACTCCGAGAAGGCTCCTTCCGGGTCACCCGCATGC CCAGCAACTCCGAGAAGGCTCCTTCCGGGTCACCCGCATGT < 41bp 1 0.0508470152538005 1 0.0313926339149475 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX17 ENSG00000115234 CDS Human protein_coding chr2:27598533 chr2:27598553 stopgain 0.999 1 41 hm5C_associated_SNPs_37118 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36670 DeepMRMD:1;iRNA_m5C:0.999536712157815 36671 chr6 144109947 144109947 1 + G A STAD 144109932 + 144109912 144109952 41 CAGCCTGAGACCCACAGTGGCAGAGCTACAAGCTCGAAGGA CAGCCTGAGACCCACAGTGGCAGAGCTACAAGCTCAAAGGA < 41bp 1 0.413135713391779 1 0.61065936088562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHACTR2 ENSG00000112419 CDS Human protein_coding chr6:144109932 chr6:144109947 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_37120 0 0 1 0 1 Cytosol 1 0.500231643921092 0.77868127822876 0.999536712157816 hm5C_site_36671 DeepMRMD:0.77868127822876;iRNA_m5C:0.999536712157816 36672 chr16 2070128 2070128 1 + G A STAD 2070136 + 2070116 2070156 41 CCCCTGGCCAGGGACACCCTCTCCCCCGAACCCGCAGCCCG CCCCTGGCCAGGAACACCCTCTCCCCCGAACCCGCAGCCCG < 41bp 1 0.354179537603227 1 0.742961406707764 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPW ENSG00000183971 CDS Human protein_coding chr16:2070136 chr16:2070128 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_37121 0 0 0 0 0 exosome 1 0.500231643921092 0.514077186584472 0.999536712157815 hm5C_site_36672 DeepMRMD:0.514077186584472;iRNA_m5C:0.999536712157815 36673 chr11 71209472 71209472 1 + G A STAD 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GCATACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT < 41bp 1 0.190696491795373 1 0.36709463596344 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209472 synonymous SNV . 0 3 hm5C_associated_SNPs_37122 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36673 DeepMRMD:1;iRNA_m5C:0.999536712157815 36674 chr19 7584566 7584566 1 + C T STAD 7584583 + 7584563 7584603 41 CAGCCCGCCCCGGCCCTTCTCCTGCCCGGATTGCGGGCGAG CAGTCCGCCCCGGCCCTTCTCCTGCCCGGATTGCGGGCGAG < 41bp 1 0.219332143013568 1 0.437141209840775 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF358 ENSG00000198816 CDS Human protein_coding chr19:7584583 chr19:7584566 synonymous SNV . 0 4 hm5C_associated_SNPs_37123 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36674 DeepMRMD:1;iRNA_m5C:0.999536712157815 36675 chr19 7584566 7584566 1 + C T STAD 7584584 + 7584564 7584604 41 AGCCCGCCCCGGCCCTTCTCCTGCCCGGATTGCGGGCGAGC AGTCCGCCCCGGCCCTTCTCCTGCCCGGATTGCGGGCGAGC < 41bp 1 0.447226347236752 1 0.0703980922698975 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF358 ENSG00000198816 CDS Human protein_coding chr19:7584584 chr19:7584566 synonymous SNV . 0 3 hm5C_associated_SNPs_37124 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_36675 DeepMRMD:1;iRNA_m5C:0.999536712157817 36676 chr22 42271622 42271622 1 + A G STAD 42271638 + 42271618 42271658 41 CAGAATGTCCTTCTGATGTCCCCCCCAGCCTCTGACTCAGG CAGAGTGTCCTTCTGATGTCCCCCCCAGCCTCTGACTCAGG < 41bp 1 0.0377078096286322 1 0.0432754456996918 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42271638 chr22:42271622 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_37125 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36676 DeepMRMD:1;iRNA_m5C:0.999536712157815 36677 chr12 56420729 56420729 1 + G A STAD 56420731 + 56420711 56420751 41 GAGCCTCACTCCCCTGGGGGCATCCGGCTGCCCAATGGCAA GAGCCTCACTCCCCTGGGAGCATCCGGCTGCCCAATGGCAA < 41bp 1 0.13912945729418 1 0.101568043231964 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56420731 chr12:56420729 nonsynonymous SNV 0.995 3 19 hm5C_associated_SNPs_37126 0 0 1 0 1 Cytosol 1 0.500231643921106 1 0.999536712157788 hm5C_site_36677 DeepMRMD:1;iRNA_m5C:0.999536712157788 36678 chr5 137523059 137523059 1 + G A STAD 137523065 + 137523045 137523085 41 CCTACGCTCACGGCGTTCCCCTTTACTCAAATCTGGGCCTT CCTACGCTCACGGCATTCCCCTTTACTCAAATCTGGGCCTT < 41bp 1 0.505523941814201 1 0.0969912111759186 experiment 0.988952116371598 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF20A ENSG00000112984 CDS Human protein_coding chr5:137523065 chr5:137523059 nonsynonymous SNV 0.848 0 15 hm5C_associated_SNPs_37127 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_36678 DeepMRMD:1;iRNA_m5C:0.999536712157815 36679 chr14 23778068 23778068 1 + C T STAD 23778051 + 23778031 23778071 41 TTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGCGCG TTCACAGCTCTATACGGGGACGGGGCCCTGGAGGAGGTGCG < 41bp 1 0.617005367618508 1 0.835199236869812 experiment 0.765989264762984 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCL2L2 ENSG00000129473 CDS Human protein_coding chr14:23778051 chr14:23778068 nonsynonymous SNV 0.996 0 38 hm5C_associated_SNPs_37128 0 0 1 0 1 Cytosol 1 0.500231642682068 0.329601526260376 0.999536714635864 hm5C_site_36679 DeepMRMD:0.329601526260376;iRNA_m5C:0.999536714635864 36680 chr13 53216730 53216730 1 + G T STAD 53216749 + 53216729 53216769 41 TGAGCAATGGGGAACGCTCACAGACTGTGTGGTAATGAGAG TTAGCAATGGGGAACGCTCACAGACTGTGTGGTAATGAGAG < 41bp 1 0.563804316270726 1 0.127756923437119 experiment 0.872391367458549 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HNRNPA1L2 ENSG00000139675 CDS Human protein_coding chr13:53216749 chr13:53216730 stopgain 0.198 0 2 hm5C_associated_SNPs_37131 0 0 0 0 0 Ribosome 1 0.500231643150324 1 0.999536713699353 hm5C_site_36680 DeepMRMD:1;iRNA_m5C:0.999536713699353 36681 chr11 67202556 67202556 1 + G A STAD 67202551 + 67202531 67202571 41 TACCTCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCC TACCTCCACTCCTGCCACCGCCGCCACCCTCGACCACCGCC < 41bp 1 0.260008724299084 1 0.495404213666916 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202551 chr11:67202556 synonymous SNV . 0 26 hm5C_associated_SNPs_37133 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36681 DeepMRMD:1;iRNA_m5C:0.999536712157815 36682 chr11 67202556 67202556 1 + G A STAD 67202555 + 67202535 67202575 41 TCCACTCCTGCCACCGCCGCCGCCCTCGACCACCGCCCCTC TCCACTCCTGCCACCGCCGCCACCCTCGACCACCGCCCCTC < 41bp 1 0.576315608931534 1 0.144398808479309 experiment 0.847368782136933 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67202555 chr11:67202556 synonymous SNV . 0 22 hm5C_associated_SNPs_37134 0 0 1 0 1 Ribosome 1 0.500231895322746 1 0.999536209354507 hm5C_site_36682 DeepMRMD:1;iRNA_m5C:0.999536209354507 36683 chr15 40509817 40509817 1 + A G STAD 40509802 + 40509782 40509822 41 CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTGCAGAT < 41bp 1 0.388353380484363 1 0.5771843791008 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509802 chr15:40509817 synonymous SNV . 0 36 hm5C_associated_SNPs_37135 0 0 1 0 1 Nucleus 1 0.500231643921092 0.8456312417984 0.999536712157815 hm5C_site_36683 DeepMRMD:0.8456312417984;iRNA_m5C:0.999536712157815 36684 chr19 54652450 54652450 1 + G A STAD 54652444 + 54652424 54652464 41 GCAGCCAGGCCTTGGGCCCCCCTTCCGGCCCCCACAACCCA GCAGCCAGGCCTTGGGCCCCCCTTCCAGCCCCCACAACCCA < 41bp 1 0.023938709912742 1 0.0366153419017792 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54652444 chr19:54652450 nonsynonymous SNV 0.353 0 27 hm5C_associated_SNPs_37136 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36684 DeepMRMD:1;iRNA_m5C:0.999536712157815 36685 chr7 101459318 101459318 1 + C A STAD 101459315 + 101459295 101459335 41 CTCAATATGTCTCAAGATGGCGGCCAATGTGGGATCGATGT CTCAATATGTCTCAAGATGGCGGACAATGTGGGATCGATGT < 41bp 1 0.0969553836904127 1 0.347391694784164 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101459315 chr7:101459318 nonsynonymous SNV 0.489 2 24 hm5C_associated_SNPs_37137 0 0 1 0 1 Exosome 1 0.500231643937085 1 0.999536712125829 hm5C_site_36685 DeepMRMD:1;iRNA_m5C:0.999536712125829 36686 chr20 60701461 60701461 1 + G A STAD 60701448 + 60701428 60701468 41 GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTGCTCAGCC GGCGCCCTACGGCCCGCTGGCGGCCAGCTCCCTACTCAGCC < 41bp 1 0.645103023580306 1 0.510593771934509 experiment 0.709793952839388 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701448 chr20:60701461 synonymous SNV . 0 34 hm5C_associated_SNPs_37138 0 0 1 0 1 Ribosome 1 0.500231643921092 0.978812456130982 0.999536712157815 hm5C_site_36686 DeepMRMD:0.978812456130982;iRNA_m5C:0.999536712157815 36687 chr15 91432760 91432760 1 + G A STAD 91432750 + 91432730 91432770 41 GGCGCTGTCCCCCACAGGTCCGCACCTGACGTCCCACCCTG GGCGCTGTCCCCCACAGGTCCGCACCTGACATCCCACCCTG < 41bp 1 0.404240137770613 1 0.127287358045578 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FES ENSG00000182511 CDS Human protein_coding chr15:91432750 chr15:91432760 nonsynonymous SNV 0.819 0 31 hm5C_associated_SNPs_37139 0 0 1 0 1 cytosol 1 0.500231643517103 1 0.999536712965794 hm5C_site_36687 DeepMRMD:1;iRNA_m5C:0.999536712965794 36688 chr7 128852104 128852104 1 + C T STAD 128852114 + 128852094 128852134 41 GGACTCTTGCCGACAGGGAGCGTGGACCCTGGTCTCCAACC GGACTCTTGCTGACAGGGAGCGTGGACCCTGGTCTCCAACC < 41bp 1 0.438184076322117 1 0.464737147092819 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128852114 chr7:128852104 stopgain 0.973 0 11 hm5C_associated_SNPs_37140 0 0 0 0 0 cytosol 1 0.500231643869712 1 0.999536712260576 hm5C_site_36688 DeepMRMD:1;iRNA_m5C:0.999536712260576 36689 chr19 37853757 37853757 1 + C A STAD 37853759 + 37853739 37853779 41 CAGCGGACACACTCAGGGCTCAAGCCTTATGTGTGCAAGGA CAGCGGACACACTCAGGGATCAAGCCTTATGTGTGCAAGGA < 41bp 1 0.343267580460855 1 0.148670762777328 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HKR1 ENSG00000181666 CDS Human protein_coding chr19:37853759 chr19:37853757 nonsynonymous SNV 0.987 1 19 hm5C_associated_SNPs_37141 0 0 1 0 0 exosome 1 0.500231266240928 1 0.999537467518143 hm5C_site_36689 DeepMRMD:1;iRNA_m5C:0.999537467518143 36690 chr16 56867231 56867231 1 + C T STAD 56867224 + 56867204 56867244 41 GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCGCTGCCA GCAGTTGCCTTTCTTTTCCGCATGGAGTGGCTGCGCTGCCA < 41bp 1 0.470250900933248 1 0.20759254693985 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56867224 chr16:56867231 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_37142 0 0 1 0 1 Nucleus 1 0.500231643939425 1 0.99953671212115 hm5C_site_36690 DeepMRMD:1;iRNA_m5C:0.99953671212115 36691 chr7 73731896 73731896 1 + T C STAD 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGCCCAGCGGCCCGAAGCCCCCCGGCCGTGGGGGGAAGCA < 41bp 1 0.273571220126764 1 0.09771928191185 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731896 nonsynonymous SNV 0.999 3 14 hm5C_associated_SNPs_37143 0 0 0 0 1 Ribosome 1 0.500231644007643 1 0.999536711984715 hm5C_site_36691 DeepMRMD:1;iRNA_m5C:0.999536711984715 36692 chr7 73731896 73731896 1 + T C STAD 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGCCCAGCGGCCCGAAGCCCCCCGGCCGTGGGGGGAAGCAC < 41bp 1 0.427399247414609 1 0.166781783103943 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731896 nonsynonymous SNV 0.999 3 13 hm5C_associated_SNPs_37144 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36692 DeepMRMD:1;iRNA_m5C:0.999536712157815 36693 chr7 73731896 73731896 1 + T C STAD 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GCCCAGCGGCCCGAAGCCCCCCGGCCGTGGGGGGAAGCACT < 41bp 1 0.204403057187728 1 0.465773552656174 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731896 nonsynonymous SNV 0.999 3 12 hm5C_associated_SNPs_37145 0 0 0 0 1 Ribosome 1 0.500231643897288 1 0.999536712205425 hm5C_site_36693 DeepMRMD:1;iRNA_m5C:0.999536712205425 36694 chr7 73731896 73731896 1 + T C STAD 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCCGAAGCCCCCCGGCCGTGGGGGGAAGCACTC < 41bp 1 0.393579221638339 1 0.422031193971634 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731896 nonsynonymous SNV 0.999 3 11 hm5C_associated_SNPs_37146 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36694 DeepMRMD:1;iRNA_m5C:0.999536712157815 36695 chr7 6049016 6049016 1 + C T STAD 6049030 + 6049010 6049050 41 GTAAAGCCCTATCACGGGGGCGGCGCGCCTCTCCGTGTGGA GTAAAGTCCTATCACGGGGGCGGCGCGCCTCTCCGTGTGGA < 41bp 1 0.639895550668759 1 0.460839122533798 experiment 0.720208898662481 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6049030 chr7:6049016 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_37147 0 0 1 0 0 Ribosome 1 0.500231644396743 1 0.999536711206514 hm5C_site_36695 DeepMRMD:1;iRNA_m5C:0.999536711206514 36696 chr7 2473372 2473372 1 + G A STAD 2473368 + 2473348 2473388 41 GGACCGGCAGCTCCGCTTCCCCCCGAGCTACCGGAACAGGA GGACCGGCAGCTCCGCTTCCCCCCAAGCTACCGGAACAGGA < 41bp 1 0.486425211250441 1 0.267067909240723 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2473368 chr7:2473372 synonymous SNV . 0 25 hm5C_associated_SNPs_37148 0 0 1 0 0 nucleolus 1 0.500231643921139 1 0.999536712157723 hm5C_site_36696 DeepMRMD:1;iRNA_m5C:0.999536712157723 36697 chr16 30964937 30964937 1 + C A STAD 30964947 + 30964927 30964967 41 CAGCACCGTCCCAAGCTGAGCCAGCCTGCCCACCCCGGCAA CAGCACCGTCACAAGCTGAGCCAGCCTGCCCACCCCGGCAA < 41bp 1 0.317760272263002 1 0.0984014570713043 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30964947 chr16:30964937 synonymous SNV . 0 11 hm5C_associated_SNPs_37149 0 0 1 0 0 chromatin 1 0.500231648015266 1 0.999536703969468 hm5C_site_36697 DeepMRMD:1;iRNA_m5C:0.999536703969468 36698 chr5 149006701 149006701 1 + G A STAD 149006692 + 149006672 149006712 41 GCTCTCCTGAGCAGGTATGGCCCTGGGAAGCTGTACCAGGT GCTCTCCTGAGCAGGTATGGCCCTGGGAAACTGTACCAGGT < 41bp 1 0.228717587934634 1 0.557100832462311 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149006692 chr5:149006701 synonymous SNV . 0 30 hm5C_associated_SNPs_37150 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.885798335075378 0.999536712157815 hm5C_site_36698 DeepMRMD:0.885798335075378;iRNA_m5C:0.999536712157815 36699 chr14 21555165 21555165 1 + C T STAD 21555174 + 21555154 21555194 41 CCCCAGAGCTCCGAGTGCAGCAGATGGTGTCCATGGGCATT CCCCAGAGCTCTGAGTGCAGCAGATGGTGTCCATGGGCATT < 41bp 1 0.271458413172933 1 0.2230124771595 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21555174 chr14:21555165 stopgain 1.000 0 12 hm5C_associated_SNPs_37151 0 0 1 0 2 Cytosol 1 0.500231643921105 1 0.99953671215779 hm5C_site_36699 DeepMRMD:1;iRNA_m5C:0.99953671215779 36700 chr9 135946987 135946987 1 + G C STAD 135946967 + 135946947 135946987 41 CTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGG CTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGC < 41bp 1 0.498369911364114 1 0.136359006166458 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946967 chr9:135946987 nonsynonymous SNV 0.003 1 41 hm5C_associated_SNPs_37152 0 0 0 0 0 exosome 1 0.500248355613856 1 0.999503288772289 hm5C_site_36700 DeepMRMD:1;iRNA_m5C:0.999503288772289 36701 chr9 135946987 135946987 1 + G C STAD 135946969 + 135946949 135946989 41 CCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC CCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGCCC < 41bp 1 0.262764283776847 1 0.0863560736179352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946969 chr9:135946987 nonsynonymous SNV 0.003 1 39 hm5C_associated_SNPs_37153 0 0 0 0 0 exosome 1 0.500231935908459 1 0.999536128183081 hm5C_site_36701 DeepMRMD:1;iRNA_m5C:0.999536128183081 36702 chr9 135946987 135946987 1 + G C STAD 135946970 + 135946950 135946990 41 CGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC CGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGCCCC < 41bp 1 0.493036543960405 1 0.209382295608521 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946970 chr9:135946987 nonsynonymous SNV 0.003 1 38 hm5C_associated_SNPs_37154 0 0 0 0 0 exosome 1 0.500231614453523 1 0.999536771092954 hm5C_site_36702 DeepMRMD:1;iRNA_m5C:0.999536771092954 36703 chr9 135946987 135946987 1 + G C STAD 135946988 + 135946968 135947008 41 GCCCACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGG GCCCACGGGTGACTCCGGGCCCCCCCCCGTGACCCCCACGG < 41bp 1 0.190575806202593 1 0.170444697141647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946988 chr9:135946987 nonsynonymous SNV 0.003 1 20 hm5C_associated_SNPs_37156 0 0 0 0 0 exosome 1 0.500231644039189 1 0.999536711921622 hm5C_site_36703 DeepMRMD:1;iRNA_m5C:0.999536711921622 36704 chr9 135946987 135946987 1 + G C STAD 135946989 + 135946969 135947009 41 CCCACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGG CCCACGGGTGACTCCGGGCCCCCCCCCGTGACCCCCACGGG < 41bp 1 0.211854955318942 1 0.136158257722855 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946989 chr9:135946987 nonsynonymous SNV 0.003 1 19 hm5C_associated_SNPs_37157 0 0 0 0 0 exosome 1 0.500231633703945 1 0.999536732592109 hm5C_site_36704 DeepMRMD:1;iRNA_m5C:0.999536732592109 36705 chr9 135946987 135946987 1 + G C STAD 135946990 + 135946970 135947010 41 CCACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGT CCACGGGTGACTCCGGGCCCCCCCCCGTGACCCCCACGGGT < 41bp 1 0.168651253805607 1 0.100238919258118 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946990 chr9:135946987 nonsynonymous SNV 0.003 1 18 hm5C_associated_SNPs_37158 0 0 0 0 0 exosome 1 0.500228401152423 1 0.999543197695154 hm5C_site_36705 DeepMRMD:1;iRNA_m5C:0.999543197695154 36706 chr9 135946987 135946987 1 + G C STAD 135946991 + 135946971 135947011 41 CACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTG CACGGGTGACTCCGGGCCCCCCCCCGTGACCCCCACGGGTG < 41bp 1 0.362977190163125 1 0.269076079130173 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946991 chr9:135946987 nonsynonymous SNV 0.003 1 17 hm5C_associated_SNPs_37159 0 0 0 0 0 exosome 1 0.500231604221633 1 0.999536791556734 hm5C_site_36706 DeepMRMD:1;iRNA_m5C:0.999536791556734 36707 chr9 135946987 135946987 1 + G C STAD 135946992 + 135946972 135947012 41 ACGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGA ACGGGTGACTCCGGGCCCCCCCCCGTGACCCCCACGGGTGA < 41bp 1 0.654001388261087 1 0.472084879875183 experiment 0.691997223477827 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946992 chr9:135946987 nonsynonymous SNV 0.003 1 16 hm5C_associated_SNPs_37160 0 0 0 0 0 exosome 1 0.500222254512931 1 0.999555490974137 hm5C_site_36707 DeepMRMD:1;iRNA_m5C:0.999555490974137 36708 chr9 135946987 135946987 1 + G C STAD 135946993 + 135946973 135947013 41 CGGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGAC CGGGTGACTCCGGGCCCCCCCCCGTGACCCCCACGGGTGAC < 41bp 1 0.586415401052472 1 0.27237194776535 experiment 0.827169197895057 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946993 chr9:135946987 nonsynonymous SNV 0.003 1 15 hm5C_associated_SNPs_37161 0 0 0 0 0 exosome 1 0.500231659291533 1 0.999536681416934 hm5C_site_36708 DeepMRMD:1;iRNA_m5C:0.999536681416934 36709 chr9 135946987 135946987 1 + G C STAD 135946994 + 135946974 135947014 41 GGGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGACT GGGTGACTCCGGGCCCCCCCCCGTGACCCCCACGGGTGACT < 41bp 1 0.27080264883864 1 0.79052722454071 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946994 chr9:135946987 nonsynonymous SNV 0.003 1 14 hm5C_associated_SNPs_37162 0 0 0 0 0 exosome 1 0.500231643804175 0.41894555091858 0.999536712391651 hm5C_site_36709 DeepMRMD:0.41894555091858;iRNA_m5C:0.999536712391651 36710 chr9 135946987 135946987 1 + G C STAD 135946995 + 135946975 135947015 41 GGTGACTCCGGGGCCCCCCCCGTGACCCCCACGGGTGACTC GGTGACTCCGGGCCCCCCCCCGTGACCCCCACGGGTGACTC < 41bp 1 0.690599609650212 1 0.789536356925964 experiment 0.618800780699577 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946995 chr9:135946987 nonsynonymous SNV 0.003 1 13 hm5C_associated_SNPs_37163 0 0 0 0 0 exosome 1 0.500231663194082 0.420927286148072 0.999536673611837 hm5C_site_36710 DeepMRMD:0.420927286148072;iRNA_m5C:0.999536673611837 36711 chr9 135946987 135946987 1 + G C STAD 135947000 + 135946980 135947020 41 CTCCGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGA CTCCGGGCCCCCCCCCGTGACCCCCACGGGTGACTCCGAGA < 41bp 1 0.232473340568926 1 0.048602968454361 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947000 chr9:135946987 nonsynonymous SNV 0.003 1 8 hm5C_associated_SNPs_37164 0 0 0 0 0 exosome 1 0.50023774377622 1 0.999524512447561 hm5C_site_36711 DeepMRMD:1;iRNA_m5C:0.999524512447561 36712 chr9 135946987 135946987 1 + G C STAD 135947001 + 135946981 135947021 41 TCCGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGAC TCCGGGCCCCCCCCCGTGACCCCCACGGGTGACTCCGAGAC < 41bp 1 0.680533601118602 1 0.0815869867801666 experiment 0.638932797762796 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947001 chr9:135946987 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_37165 0 0 0 0 0 exosome 1 0.500226631370492 1 0.999546737259017 hm5C_site_36712 DeepMRMD:1;iRNA_m5C:0.999546737259017 36713 chr9 135946987 135946987 1 + G C STAD 135947002 + 135946982 135947022 41 CCGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACC CCGGGCCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACC < 41bp 1 0.297447100854721 1 0.0542077422142029 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947002 chr9:135946987 nonsynonymous SNV 0.003 1 6 hm5C_associated_SNPs_37166 0 0 0 0 0 exosome 1 0.500629399835772 1 0.998741200328456 hm5C_site_36713 DeepMRMD:1;iRNA_m5C:0.998741200328456 36714 chr9 135946987 135946987 1 + G C STAD 135947003 + 135946983 135947023 41 CGGGGCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACCG CGGGCCCCCCCCCGTGACCCCCACGGGTGACTCCGAGACCG < 41bp 1 0.544295785777628 1 0.221211165189743 experiment 0.911408428444744 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135947003 chr9:135946987 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_37167 0 0 0 0 0 exosome 1 0.500225141544927 1 0.999549716910146 hm5C_site_36714 DeepMRMD:1;iRNA_m5C:0.999549716910146 36715 chr5 173380259 173380259 1 + G A STAD 173380246 + 173380226 173380266 41 CTATCAGTGCCCGCTTTGTTCAGCTGCAGCATGGAGAGATA CTATCAGTGCCCGCTTTGTTCAGCTGCAGCATGAAGAGATA < 41bp 1 0.535219467642739 1 0.45435893535614 experiment 0.929561064714522 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173380246 chr5:173380259 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_37168 0 0 1 0 1 Ribosome 1 0.50023165173581 1 0.999536696528381 hm5C_site_36715 DeepMRMD:1;iRNA_m5C:0.999536696528381 36716 chr10 5963495 5963495 1 + C T STAD 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CGGGTGATGGAAGGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.119989164743912 1 0.433421581983566 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963495 nonsynonymous SNV 0.771 5 8 hm5C_associated_SNPs_37169 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36716 DeepMRMD:1;iRNA_m5C:0.999536712157815 36717 chr10 5963495 5963495 1 + C T STAD 5963513 + 5963493 5963533 41 GACGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG GATGGAAGGGGAATTCCCTTCAAGGATACATTTGATTGGGG < 41bp 1 0.688932394544475 1 0.815739929676056 experiment 0.622135210911051 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963513 chr10:5963495 nonsynonymous SNV 0.771 5 3 hm5C_associated_SNPs_37170 0 0 1 0 2 Ribosome 1 0.500231643916986 0.368520140647888 0.999536712166027 hm5C_site_36717 DeepMRMD:0.368520140647888;iRNA_m5C:0.999536712166027 36718 chr2 10560040 10560040 1 + G A STAD 10560051 + 10560031 10560071 41 AAGATCTACGCCAACTTCTTCCCCTACGGCGACGCTTCCAA AAGATCTACACCAACTTCTTCCCCTACGGCGACGCTTCCAA < 41bp 1 0.0817480223557577 1 0.0944913029670715 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10560051 chr2:10560040 nonsynonymous SNV 0.996 1 10 hm5C_associated_SNPs_37171 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_36718 DeepMRMD:1;iRNA_m5C:0.999536712157816 36719 chr16 56872944 56872944 1 + A G STAD 56872936 + 56872916 56872956 41 CTTCTTTTGGACTTGATCACCTTTTTTGACGAGTATCATAG CTTCTTTTGGACTTGATCACCTTTTTTGGCGAGTATCATAG < 41bp 1 0.0672818372091078 1 0.0278655588626862 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56872936 chr16:56872944 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_37173 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36719 DeepMRMD:1;iRNA_m5C:0.999536712157815 36720 chr16 56872944 56872944 1 + A G STAD 56872961 + 56872941 56872981 41 TTGACGAGTATCATAGTGGTCATATTGATAGAGCTTTTGAT TTGGCGAGTATCATAGTGGTCATATTGATAGAGCTTTTGAT < 41bp 1 0.0640009725843121 1 0.041296511888504 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56872961 chr16:56872944 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_37174 0 0 1 0 2 Nucleus 1 0.50023171004437 1 0.99953657991126 hm5C_site_36720 DeepMRMD:1;iRNA_m5C:0.99953657991126 36721 chr11 10472572 10472572 1 + G A STAD 10472588 + 10472568 10472608 41 CATGGCCCTGTCGTCCGAACCCGGTGAGTGCGCGCGAGGCT CATGACCCTGTCGTCCGAACCCGGTGAGTGCGCGCGAGGCT < 41bp 1 0.623806298560783 1 0.728132605552673 experiment 0.752387402878434 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10472588 chr11:10472572 nonsynonymous SNV 0.136 0 5 hm5C_associated_SNPs_37175 0 0 0 0 1 Cytosol 1 0.500208628335433 0.543734788894654 0.999582743329135 hm5C_site_36721 DeepMRMD:0.543734788894654;iRNA_m5C:0.999582743329135 36722 chr11 66063018 66063018 1 + C T STAD 66063004 + 66062984 66063024 41 AGCGGGGGGCCGCTGGGGCGCCGTGGAGAGGACACGGAACC AGCGGGGGGCCGCTGGGGCGCCGTGGAGAGGACATGGAACC < 41bp 1 0.367601021428165 1 0.594435274600983 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM151A ENSG00000179292 CDS Human protein_coding chr11:66063004 chr11:66063018 nonsynonymous SNV 0.971 2 35 hm5C_associated_SNPs_37176 0 0 0 0 0 exosome 1 0.50023164385443 0.811129450798034 0.999536712291139 hm5C_site_36722 DeepMRMD:0.811129450798034;iRNA_m5C:0.999536712291139 36723 chr17 3563924 3563924 1 + C T STAD 3563941 + 3563921 3563961 41 GCGCGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGC GCGTGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGC < 41bp 1 0.0984036106230823 1 0.0832481384277344 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNS ENSG00000040531 CDS Human protein_coding chr17:3563941 chr17:3563924 nonsynonymous SNV 0.029 1 4 hm5C_associated_SNPs_37177 0 0 0 0 1 Endoplasmic reticulum 1 0.500231635866832 1 0.999536728266335 hm5C_site_36723 DeepMRMD:1;iRNA_m5C:0.999536728266335 36724 chr17 3563924 3563924 1 + C T STAD 3563942 + 3563922 3563962 41 CGCGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGCA CGTGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGCA < 41bp 1 0.311115536295185 1 0.151660293340683 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNS ENSG00000040531 CDS Human protein_coding chr17:3563942 chr17:3563924 nonsynonymous SNV 0.029 1 3 hm5C_associated_SNPs_37178 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643922593 1 0.999536712154815 hm5C_site_36724 DeepMRMD:1;iRNA_m5C:0.999536712154815 36725 chr22 44368124 44368124 1 + G A STAD 44368123 + 44368103 44368143 41 TTTTTTTATTTAGGTGATGACGCACTTCCAAATGGGTTAGA TTTTTTTATTTAGGTGATGACACACTTCCAAATGGGTTAGA < 41bp 1 0.141927546013682 1 0.119208008050919 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44368123 chr22:44368124 nonsynonymous SNV 0.903 4 22 hm5C_associated_SNPs_37179 0 0 1 0 2 Cytosol 1 0.500231643989878 1 0.999536712020245 hm5C_site_36725 DeepMRMD:1;iRNA_m5C:0.999536712020245 36726 chr7 99702533 99702533 1 + C T STAD 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GAGATTTGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA < 41bp 1 0.0199833846743956 1 0.0653040111064911 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702533 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_37180 0 0 1 0 2 Cytosol 1 0.500227561828664 1 0.999544876342673 hm5C_site_36726 DeepMRMD:1;iRNA_m5C:0.999544876342673 36727 chr1 151006649 151006649 1 + T A STAD 151006659 + 151006639 151006679 41 GAGGCCGTCTTCGAGAAGTGCAGTCAGATCTCACTGTCACA GAGGCCGTCTACGAGAAGTGCAGTCAGATCTCACTGTCACA < 41bp 1 0.10478021062739 1 0.121313899755478 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:151006659 chr1:151006649 nonsynonymous SNV 0.621 1 11 hm5C_associated_SNPs_37181 0 0 1 0 0 chromatin 1 0.50023164392113 1 0.99953671215774 hm5C_site_36727 DeepMRMD:1;iRNA_m5C:0.99953671215774 36728 chr12 112460298 112460298 1 + T G STAD 112460318 + 112460298 112460338 41 TTAGACCAAGGGGAGGACTTCCCAGCATCAGAGATGACACG GTAGACCAAGGGGAGGACTTCCCAGCATCAGAGATGACACG < 41bp 1 0.295551820018782 1 0.416843563318253 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ERP29 ENSG00000089248 CDS Human protein_coding chr12:112460318 chr12:112460298 nonsynonymous SNV 0.997 0 1 hm5C_associated_SNPs_37182 0 0 1 1 0 Ribosome 1 0.500231717704596 1 0.999536564590809 hm5C_site_36728 DeepMRMD:1;iRNA_m5C:0.999536564590809 36729 chr7 21631031 21631031 1 + A T STAD 21631019 + 21630999 21631039 41 AGCACAGAGTTGAGCGCACACAGAAAAACGTGAAGGTGATC AGCACAGAGTTGAGCGCACACAGAAAAACGTGTAGGTGATC < 41bp 1 0.56013016667505 1 0.492816597223282 experiment 0.8797396666499 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21631019 chr7:21631031 stopgain 0.002 0 33 hm5C_associated_SNPs_37183 0 0 0 0 0 nucleolus 1 0.500231643949866 1 0.999536712100269 hm5C_site_36729 DeepMRMD:1;iRNA_m5C:0.999536712100269 36730 chr12 109637357 109637357 1 + G A STAD 109637339 + 109637319 109637359 41 GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAAGT < 41bp 1 0.220449606871723 1 0.679406881332397 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109637339 chr12:109637357 synonymous SNV . 0 39 hm5C_associated_SNPs_37184 0 0 1 0 1 Nucleus 1 0.500231643861548 0.641186237335206 0.999536712276904 hm5C_site_36730 DeepMRMD:0.641186237335206;iRNA_m5C:0.999536712276904 36731 chr22 29695814 29695814 1 + G T STAD 29695816 + 29695796 29695836 41 TGGGAGGAAGAAGAGGAGGACGTGGAGGACCTGGAAAAATG TGGGAGGAAGAAGAGGAGTACGTGGAGGACCTGGAAAAATG < 41bp 1 0.620994237919767 1 0.479728519916534 experiment 0.758011524160466 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695816 chr22:29695814 nonsynonymous SNV 0.922 3 19 hm5C_associated_SNPs_37185 0 0 1 0 1 Cytosol 1 0.500231674111099 1 0.999536651777801 hm5C_site_36731 DeepMRMD:1;iRNA_m5C:0.999536651777801 36732 chr22 29695814 29695814 1 + G T STAD 29695825 + 29695805 29695845 41 GAAGAGGAGGACGTGGAGGACCTGGAAAAATGGATAAGTAA GAAGAGGAGTACGTGGAGGACCTGGAAAAATGGATAAGTAA < 41bp 1 0.307805339766442 1 0.30617293715477 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695825 chr22:29695814 nonsynonymous SNV 0.922 3 10 hm5C_associated_SNPs_37186 0 0 1 0 1 Cytosol 1 0.500231643921086 1 0.999536712157828 hm5C_site_36732 DeepMRMD:1;iRNA_m5C:0.999536712157828 36733 chr10 17277380 17277380 1 + G T STAD 17277386 + 17277366 17277406 41 CTGCTGGAAGGCGAGGAGAGCAGGTAGGGAACTCAGACTTG CTGCTGGAAGGCGATGAGAGCAGGTAGGGAACTCAGACTTG < 41bp 1 0.655075241129738 1 0.498897820711136 experiment 0.689849517740523 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277386 chr10:17277380 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_37188 0 0 1 1 1 Ribosome 1 0.500231640745842 1 0.999536718508316 hm5C_site_36733 DeepMRMD:1;iRNA_m5C:0.999536718508316 36734 chr7 91735033 91735033 1 + C T STAD 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTTTGTT < 41bp 1 0.112134264912329 1 0.399781584739685 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735033 nonsynonymous SNV 0.994 2 37 hm5C_associated_SNPs_37189 0 0 1 0 2 Nucleus 1 0.500231643921371 1 0.999536712157258 hm5C_site_36734 DeepMRMD:1;iRNA_m5C:0.999536712157258 36735 chr2 190320060 190320060 1 + G T STAD 190320076 + 190320056 190320096 41 GCTGGTTTCAGTGAAACTGCCAAAATCCTCAAGCCAGGAAG GCTGTTTTCAGTGAAACTGCCAAAATCCTCAAGCCAGGAAG < 41bp 1 0.622188606084088 1 0.516179323196411 experiment 0.755622787831824 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190320076 chr2:190320060 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_37190 0 0 1 0 1 Nucleus 1 0.500231643856535 0.967641353607178 0.999536712286931 hm5C_site_36735 DeepMRMD:0.967641353607178;iRNA_m5C:0.999536712286931 36736 chrX 41025371 41025371 1 + C G STAD 41025376 + 41025356 41025396 41 TTTTGAGCGATTCTTCAAAGCTGTGAATTGTCGAGAAGGAA TTTTGAGCGATTCTTGAAAGCTGTGAATTGTCGAGAAGGAA < 41bp 1 0.15792777087457 1 0.0799723863601685 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41025376 chrX:41025371 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_37191 0 0 1 0 0 Nucleus 1 0.500222017702209 1 0.999555964595582 hm5C_site_36736 DeepMRMD:1;iRNA_m5C:0.999555964595582 36737 chr5 137518918 137518918 1 + G A STAD 137518909 + 137518889 137518929 41 TGCCCCACTACCTGTCCCGGCAAACATTCGCTTCTCCATCT TGCCCCACTACCTGTCCCGGCAAACATTCACTTCTCCATCT < 41bp 1 0.208881553584716 1 0.0863068103790283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF20A ENSG00000112984 CDS Human protein_coding chr5:137518909 chr5:137518918 nonsynonymous SNV 0.989 2 30 hm5C_associated_SNPs_37192 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36737 DeepMRMD:1;iRNA_m5C:0.999536712157815 36738 chr1 233514948 233514948 1 + G T STAD 233514944 + 233514924 233514964 41 TGGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG TGGGTGCACCGTCCTTCTGGCATCTGTGGCTCTGGGACTGG < 41bp 1 0.154245438381128 1 0.0353773236274719 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233514944 chr1:233514948 synonymous SNV . 0 25 hm5C_associated_SNPs_37194 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_36738 DeepMRMD:1;iRNA_m5C:0.999536712157815 36739 chr19 10404979 10404979 1 + G A STAD 10404989 + 10404969 10405009 41 CAAAACAGTCGTCGTGAGCGCGGAGTGTGAGCGAGGCCCAG CAAAACAGTCATCGTGAGCGCGGAGTGTGAGCGAGGCCCAG < 41bp 1 0.506728774974472 1 0.738169014453888 experiment 0.986542450051055 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10404989 chr19:10404979 nonsynonymous SNV 0.992 0 11 hm5C_associated_SNPs_37195 0 0 0 0 0 Endoplasmic reticulum 1 0.50023164706974 0.523661971092224 0.999536705860521 hm5C_site_36739 DeepMRMD:0.523661971092224;iRNA_m5C:0.999536705860521 36740 chr5 128440935 128440935 1 + G T STAD 128440946 + 128440926 128440966 41 TACCCTAAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT TACCCTAAATGTCTTGGGAGCACGGTTCAAGAAATTGATTT < 41bp 1 0.608121156839652 1 0.432610958814621 experiment 0.783757686320696 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440946 chr5:128440935 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_37196 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_36740 DeepMRMD:1;iRNA_m5C:0.999536712157815 36741 chr19 36218423 36218423 1 + G A STAD 36218408 + 36218388 36218428 41 CTGCGGACCGTGTGCTGGGGCAGCGCAGCCCCGCTGGCGAG CTGCGGACCGTGTGCTGGGGCAGCGCAGCCCCGCTAGCGAG < 41bp 1 0.55261020827024 1 0.497105568647385 experiment 0.89477958345952 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218408 chr19:36218423 stopgain 0.998 1 36 hm5C_associated_SNPs_37198 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_36741 DeepMRMD:1;iRNA_m5C:0.999536712157815 36742 chr17 79412060 79412060 1 + G A STAD 79412070 + 79412050 79412090 41 TGGACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGG TGGACCAGGCATCACTGTGGCCCCCCATGTACGGGGGCCGG < 41bp 1 0.0357754739106317 1 0.0523914992809296 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412070 chr17:79412060 synonymous SNV . 0 11 hm5C_associated_SNPs_37199 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36742 DeepMRMD:1;iRNA_m5C:0.999536712157815 36743 chr17 79412060 79412060 1 + G A STAD 79412071 + 79412051 79412091 41 GGACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGG GGACCAGGCATCACTGTGGCCCCCCATGTACGGGGGCCGGG < 41bp 1 0.0486856372600396 1 0.0810961425304413 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412071 chr17:79412060 synonymous SNV . 0 10 hm5C_associated_SNPs_37200 0 0 0 0 1 chromatin 1 0.500231593279397 1 0.999536813441205 hm5C_site_36743 DeepMRMD:1;iRNA_m5C:0.999536813441205 36744 chr17 79412060 79412060 1 + G A STAD 79412072 + 79412052 79412092 41 GACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGGG GACCAGGCATCACTGTGGCCCCCCATGTACGGGGGCCGGGG < 41bp 1 0.159522023060752 1 0.187638342380524 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412072 chr17:79412060 synonymous SNV . 0 9 hm5C_associated_SNPs_37201 0 0 0 0 1 chromatin 1 0.500231644768126 1 0.999536710463748 hm5C_site_36744 DeepMRMD:1;iRNA_m5C:0.999536710463748 36745 chr17 79412060 79412060 1 + G A STAD 79412073 + 79412053 79412093 41 ACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGGGC ACCAGGCATCACTGTGGCCCCCCATGTACGGGGGCCGGGGC < 41bp 1 0.094405662569709 1 0.260782718658447 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412073 chr17:79412060 synonymous SNV . 0 8 hm5C_associated_SNPs_37202 0 0 0 0 1 chromatin 1 0.500232995572281 1 0.999534008855438 hm5C_site_36745 DeepMRMD:1;iRNA_m5C:0.999534008855438 36746 chr17 79412060 79412060 1 + G A STAD 79412074 + 79412054 79412094 41 CCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGGGCC CCAGGCATCACTGTGGCCCCCCATGTACGGGGGCCGGGGCC < 41bp 1 0.0602514396002403 1 0.126577287912369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412074 chr17:79412060 synonymous SNV . 0 7 hm5C_associated_SNPs_37203 0 0 0 0 1 chromatin 1 0.50023164392144 1 0.999536712157119 hm5C_site_36746 DeepMRMD:1;iRNA_m5C:0.999536712157119 36747 chr11 812818 812818 1 + A C STAD 812802 + 812782 812822 41 GAAGGAGGAGTCTGAAGAGTCAGATGATGACATGGGATTTG GAAGGAGGAGTCTGAAGAGTCAGATGATGACATGGGCTTTG < 41bp 1 0.65236700746676 1 0.779668927192688 experiment 0.69526598506648 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPLP2 ENSG00000177600 CDS Human protein_coding chr11:812802 chr11:812818 synonymous SNV . 0 37 hm5C_associated_SNPs_37204 0 0 1 0 1 Ribosome 1 0.500231642317759 0.440662145614624 0.999536715364482 hm5C_site_36747 DeepMRMD:0.440662145614624;iRNA_m5C:0.999536715364482 36748 chr20 44512444 44512444 1 + C T STAD 44512434 + 44512414 44512454 41 CGCCACATCCTAGCCATGCTCAGTGCCCGCCGCCAGGTGCT CGCCACATCCTAGCCATGCTCAGTGCCCGCTGCCAGGTGCT < 41bp 1 0.495718539861385 1 0.347882032394409 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM1 ENSG00000168612 CDS Human protein_coding chr20:44512434 chr20:44512444 nonsynonymous SNV 0.857 0 31 hm5C_associated_SNPs_37205 0 0 0 0 0 nucleus 1 0.500231643921337 1 0.999536712157325 hm5C_site_36748 DeepMRMD:1;iRNA_m5C:0.999536712157325 36749 chr20 44512444 44512444 1 + C T STAD 44512456 + 44512436 44512476 41 GTGCCCGCCGCCAGGTGCTCCAGCCCGACATGCTGCCGGCT GTGCCCGCTGCCAGGTGCTCCAGCCCGACATGCTGCCGGCT < 41bp 1 0.356994009581408 1 0.743568897247314 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZSWIM1 ENSG00000168612 CDS Human protein_coding chr20:44512456 chr20:44512444 nonsynonymous SNV 0.857 0 9 hm5C_associated_SNPs_37206 0 0 0 0 0 nucleus 1 0.500231643921092 0.512862205505372 0.999536712157815 hm5C_site_36749 DeepMRMD:0.512862205505372;iRNA_m5C:0.999536712157815 36750 chr3 184042671 184042671 1 + G A STAD 184042675 + 184042655 184042695 41 GTGAATGGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAG GTGAATGGCAGGCAGAAGAACGAGGACGCCTGAAGGAAGAG < 41bp 1 0.642136243707971 1 0.623009085655212 experiment 0.715727512584059 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042675 chr3:184042671 synonymous SNV . 0 17 hm5C_associated_SNPs_37207 0 0 1 0 1 Nucleus 1 0.500231641639893 0.753981828689576 0.999536716720214 hm5C_site_36750 DeepMRMD:0.753981828689576;iRNA_m5C:0.999536716720214 36751 chr3 184042671 184042671 1 + G A STAD 184042681 + 184042661 184042701 41 GGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAA GGCAGGCAGAAGAACGAGGACGCCTGAAGGAAGAGCTGGAA < 41bp 1 0.46734099073013 1 0.55550354719162 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042681 chr3:184042671 synonymous SNV . 0 11 hm5C_associated_SNPs_37208 0 0 1 0 1 Nucleus 1 0.500231643694021 0.88899290561676 0.999536712611958 hm5C_site_36751 DeepMRMD:0.88899290561676;iRNA_m5C:0.999536712611958 36752 chr2 32958960 32958960 1 + C A STAD 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGATGT < 41bp 1 0.537904805047645 1 0.457980573177338 experiment 0.92419038990471 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958960 stopgain 0.995 1 38 hm5C_associated_SNPs_37210 0 0 1 0 2 Nucleus 1 0.500247570022542 1 0.999504859954916 hm5C_site_36752 DeepMRMD:1;iRNA_m5C:0.999504859954916 36753 chr7 87530094 87530094 1 + C T STAD 87530114 + 87530094 87530134 41 CGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAG TGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAG < 41bp 1 0.158421777636615 1 0.324806183576584 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530114 chr7:87530094 synonymous SNV . 0 1 hm5C_associated_SNPs_37211 0 0 1 0 2 chromatin 1 0.500231649513637 1 0.999536700972727 hm5C_site_36753 DeepMRMD:1;iRNA_m5C:0.999536700972727 36754 chr8 90937477 90937477 1 + T C STAD 90937486 + 90937466 90937506 41 AGCAGTAGTATTGATAGGTTCTCATCCTAATCTGTCTTTTC AGCAGTAGTATCGATAGGTTCTCATCCTAATCTGTCTTTTC < 41bp 1 0.332447430980811 1 0.0562273859977722 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90937486 chr8:90937477 nonsynonymous SNV 0.951 4 12 hm5C_associated_SNPs_37212 0 0 0 0 0 Cytosol 1 0.500231643921056 1 0.999536712157889 hm5C_site_36754 DeepMRMD:1;iRNA_m5C:0.999536712157889 36755 chr8 90937477 90937477 1 + T C STAD 90937488 + 90937468 90937508 41 CAGTAGTATTGATAGGTTCTCATCCTAATCTGTCTTTTCTG CAGTAGTATCGATAGGTTCTCATCCTAATCTGTCTTTTCTG < 41bp 1 0.196392162130845 1 0.113098561763763 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90937488 chr8:90937477 nonsynonymous SNV 0.951 4 10 hm5C_associated_SNPs_37213 0 0 0 0 0 Cytosol 1 0.500231643921073 1 0.999536712157855 hm5C_site_36755 DeepMRMD:1;iRNA_m5C:0.999536712157855 36756 chr8 90937477 90937477 1 + T C STAD 90937491 + 90937471 90937511 41 TAGTATTGATAGGTTCTCATCCTAATCTGTCTTTTCTGAAG TAGTATCGATAGGTTCTCATCCTAATCTGTCTTTTCTGAAG < 41bp 1 0.2562252345662 1 0.203247010707855 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90937491 chr8:90937477 nonsynonymous SNV 0.951 4 7 hm5C_associated_SNPs_37214 0 0 0 0 0 Cytosol 1 0.50023164401147 1 0.99953671197706 hm5C_site_36756 DeepMRMD:1;iRNA_m5C:0.99953671197706 36757 chr8 90937477 90937477 1 + T C STAD 90937492 + 90937472 90937512 41 AGTATTGATAGGTTCTCATCCTAATCTGTCTTTTCTGAAGG AGTATCGATAGGTTCTCATCCTAATCTGTCTTTTCTGAAGG < 41bp 1 0.315907106818913 1 0.076665997505188 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90937492 chr8:90937477 nonsynonymous SNV 0.951 4 6 hm5C_associated_SNPs_37215 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36757 DeepMRMD:1;iRNA_m5C:0.999536712157815 36758 chr8 90937477 90937477 1 + T C STAD 90937497 + 90937477 90937517 41 TGATAGGTTCTCATCCTAATCTGTCTTTTCTGAAGGATCAA CGATAGGTTCTCATCCTAATCTGTCTTTTCTGAAGGATCAA < 41bp 1 0.320045473303652 1 0.145082890987396 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90937497 chr8:90937477 nonsynonymous SNV 0.951 4 1 hm5C_associated_SNPs_37216 0 0 0 0 0 Cytosol 1 0.500231698741339 1 0.999536602517322 hm5C_site_36758 DeepMRMD:1;iRNA_m5C:0.999536602517322 36759 chr8 121468864 121468864 1 + A G STAD 121468848 + 121468828 121468868 41 ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGACTCA ATGTTGTATCTTTAGAAGATCTCAGAAATGTTATTGGCTCA < 41bp 1 0.393841696175647 1 0.186857551336288 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTBP ENSG00000172167 CDS Human protein_coding chr8:121468848 chr8:121468864 nonsynonymous SNV 0.970 2 37 hm5C_associated_SNPs_37217 0 0 1 0 2 membrane 1 0.500231643921127 1 0.999536712157746 hm5C_site_36759 DeepMRMD:1;iRNA_m5C:0.999536712157746 36760 chr16 30990970 30990970 1 + G A STAD 30990965 + 30990945 30990985 41 ACAGAGACATCGGACGAGGCCGAGCGCCCTAGGCCCCTGCT ACAGAGACATCGGACGAGGCCGAGCACCCTAGGCCCCTGCT < 41bp 1 0.23396954207883 1 0.559093475341797 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30990965 chr16:30990970 nonsynonymous SNV 0.011 2 26 hm5C_associated_SNPs_37218 0 0 1 0 0 Cytosol 1 0.500231650532537 0.881813049316406 0.999536698934925 hm5C_site_36760 DeepMRMD:0.881813049316406;iRNA_m5C:0.999536698934925 36761 chr8 142178431 142178431 1 + G A STAD 142178447 + 142178427 142178467 41 AGGCGCCGGAGCTGATGAGGCTCATCAGCGAGATCCTGGAC AGGCACCGGAGCTGATGAGGCTCATCAGCGAGATCCTGGAC < 41bp 1 0.402310942805378 1 0.162591010332108 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142178447 chr8:142178431 synonymous SNV . 0 5 hm5C_associated_SNPs_37219 0 0 0 0 0 Nucleus 1 0.500233618838275 1 0.999532762323449 hm5C_site_36761 DeepMRMD:1;iRNA_m5C:0.999532762323449 36762 chr2 85852703 85852703 1 + C T STAD 85852718 + 85852698 85852738 41 GCAAACTTGGACAAGCAAGCCAAATTGTCCCGGGCATATGA GCAAATTTGGACAAGCAAGCCAAATTGTCCCGGGCATATGA < 41bp 1 0.395062257155564 1 0.142891228199005 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP39 ENSG00000168883 CDS Human protein_coding chr2:85852718 chr2:85852703 synonymous SNV . 0 6 hm5C_associated_SNPs_37220 0 0 1 0 1 Cytosol 1 0.500231647431849 1 0.999536705136302 hm5C_site_36762 DeepMRMD:1;iRNA_m5C:0.999536705136302 36763 chr14 105355887 105355887 1 + T C STAD 105355874 + 105355854 105355894 41 ACGAGGCGCCGGCAGCAGGGCTCGGATTACACGTCCACCTC ACGAGGCGCCGGCAGCAGGGCTCGGATTACACGCCCACCTC < 41bp 1 0.525572436215905 1 0.399309694766998 experiment 0.948855127568191 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105355874 chr14:105355887 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_37221 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_36763 DeepMRMD:1;iRNA_m5C:0.999536712157816 36764 chr19 47111779 47111779 1 + G T STAD 47111772 + 47111752 47111792 41 TGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGA TGACTTCCCGGAGTTCCTGACCATGATTGCCAGAAAGATGA < 41bp 1 0.0823294975374982 1 0.0408437252044678 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111772 chr19:47111779 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_37222 0 0 1 0 2 Ribosome 1 0.500228647189792 1 0.999542705620416 hm5C_site_36764 DeepMRMD:1;iRNA_m5C:0.999542705620416 36765 chr19 47111779 47111779 1 + G T STAD 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTCCTGACCATGATTGCCAGAAAGATGAAGGACACAGA < 41bp 1 0.661968276105775 1 0.662064075469971 experiment 0.676063447788449 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111779 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_37223 0 0 1 0 2 Ribosome 1 0.500231642421581 0.675871849060058 0.999536715156837 hm5C_site_36765 DeepMRMD:0.675871849060058;iRNA_m5C:0.999536715156837 36766 chr19 47111779 47111779 1 + G T STAD 47111797 + 47111777 47111817 41 ATGGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGAT ATTGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGAT < 41bp 1 0.363236284140597 1 0.0877914130687714 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111797 chr19:47111779 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_37224 0 0 1 0 2 Ribosome 1 0.500231643921504 1 0.999536712156993 hm5C_site_36766 DeepMRMD:1;iRNA_m5C:0.999536712156993 36767 chr19 47111779 47111779 1 + G T STAD 47111799 + 47111779 47111819 41 GGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGATCC TGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGATCC < 41bp 1 0.333642545182367 1 0.230345159769058 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111799 chr19:47111779 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_37225 0 0 1 0 2 Ribosome 1 0.500231643921171 1 0.999536712157658 hm5C_site_36767 DeepMRMD:1;iRNA_m5C:0.999536712157658 36768 chr10 103919661 103919661 1 + A G STAD 103919665 + 103919645 103919685 41 TTAAACAGGTCCCTACAGTTCAGTCCCCCCGCCTTCTGCTC TTAAACAGGTCCCTACGGTTCAGTCCCCCCGCCTTCTGCTC < 41bp 1 0.266110476642259 1 0.132087856531143 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919665 chr10:103919661 nonsynonymous SNV 0.940 4 17 hm5C_associated_SNPs_37226 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36768 DeepMRMD:1;iRNA_m5C:0.999536712157815 36769 chr17 35413944 35413944 1 + G A STAD 35413929 + 35413909 35413949 41 TGTACCGCTCTCTTTTTGGCCAGCTCCACCCTCCCGACGAA TGTACCGCTCTCTTTTTGGCCAGCTCCACCCTCCCAACGAA < 41bp 1 0.344300138865872 1 0.412762731313705 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AATF ENSG00000108270 CDS Human other chr17:35413929 chr17:35413944 nonsynonymous SNV 0.001 0 36 hm5C_associated_SNPs_37227 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36769 DeepMRMD:1;iRNA_m5C:0.999536712157815 36770 chr15 41191818 41191818 1 + A G STAD 41191805 + 41191785 41191825 41 CCATTCCGTGAGTTTCCCAGCAACCTGGGCTACAGTGAGTT CCATTCCGTGAGTTTCCCAGCAACCTGGGCTACGGTGAGTT < 41bp 1 0.243259416734123 1 0.0592262446880341 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41191805 chr15:41191818 nonsynonymous SNV 0.991 1 34 hm5C_associated_SNPs_37228 0 0 0 0 0 chromatin 1 0.500231643921104 1 0.999536712157792 hm5C_site_36770 DeepMRMD:1;iRNA_m5C:0.999536712157792 36771 chr15 41191818 41191818 1 + A G STAD 41191817 + 41191797 41191837 41 TTTCCCAGCAACCTGGGCTACAGTGAGTTGGCCTTCTACAC TTTCCCAGCAACCTGGGCTACGGTGAGTTGGCCTTCTACAC < 41bp 1 0.509476092993035 1 0.308492124080658 experiment 0.981047814013929 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41191817 chr15:41191818 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_37229 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36771 DeepMRMD:1;iRNA_m5C:0.999536712157815 36772 chr21 45560144 45560144 1 + C T STAD 45560135 + 45560115 45560155 41 CTTTTGTCTCCCGGTAGGAGCACGTTTGCCGTGGACGGGAA CTTTTGTCTCCCGGTAGGAGCACGTTTGCTGTGGACGGGAA < 41bp 1 0.534712903973615 1 0.371767103672028 experiment 0.930574192052771 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560135 chr21:45560144 synonymous SNV . 0 30 hm5C_associated_SNPs_37230 0 0 1 0 2 Ribosome 1 0.500231643921751 1 0.999536712156498 hm5C_site_36772 DeepMRMD:1;iRNA_m5C:0.999536712156498 36773 chr5 231070 231070 1 + G T STAD 231073 + 231053 231093 41 CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAG CCATGATCACCAGGGCATGCCTTCCTTGCCAGGACCTAGAG < 41bp 1 0.299999533712126 1 0.214537382125854 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:231073 chr5:231070 nonsynonymous SNV 0.897 3 18 hm5C_associated_SNPs_37231 0 0 1 0 2 Nucleus 1 0.500231659640047 1 0.999536680719906 hm5C_site_36773 DeepMRMD:1;iRNA_m5C:0.999536680719906 36774 chr5 170883784 170883784 1 + G A STAD 170883778 + 170883758 170883798 41 CACGACGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACAC CACGACGGTGACCAAGAGGTCCCGTCAGATCCGGCCCACAC < 41bp 1 0.367765496906626 1 0.101170599460602 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGF18 ENSG00000156427 CDS Human protein_coding chr5:170883778 chr5:170883784 nonsynonymous SNV 0.999 3 27 hm5C_associated_SNPs_37232 0 0 0 0 0 nucleolus 1 0.500232918309949 1 0.999534163380102 hm5C_site_36774 DeepMRMD:1;iRNA_m5C:0.999534163380102 36775 chr5 170883784 170883784 1 + G A STAD 170883780 + 170883760 170883800 41 CGACGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACACAC CGACGGTGACCAAGAGGTCCCGTCAGATCCGGCCCACACAC < 41bp 1 0.669728324902599 1 0.408625066280365 experiment 0.660543350194802 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGF18 ENSG00000156427 CDS Human protein_coding chr5:170883780 chr5:170883784 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_37233 0 0 0 0 0 nucleolus 1 0.500211633283852 1 0.999576733432297 hm5C_site_36775 DeepMRMD:1;iRNA_m5C:0.999576733432297 36776 chr21 45217944 45217944 1 + C T STAD 45217948 + 45217928 45217968 41 GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG GTGGTGAGCGTGGAGATGCGCTGTCCCAGAAGAGGTCTGAG < 41bp 1 0.224835472110759 1 0.284418165683746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217948 chr21:45217944 synonymous SNV . 0 17 hm5C_associated_SNPs_37234 0 0 1 0 1 Ribosome 1 0.500231643792934 1 0.999536712414132 hm5C_site_36776 DeepMRMD:1;iRNA_m5C:0.999536712414132 36777 chr21 45217944 45217944 1 + C T STAD 45217964 + 45217944 45217984 41 CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG TGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG < 41bp 1 0.693870276674606 1 0.213148474693298 experiment 0.612259446650788 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217964 chr21:45217944 synonymous SNV . 0 1 hm5C_associated_SNPs_37235 0 0 1 0 1 Ribosome 1 0.500231644567999 1 0.999536710864002 hm5C_site_36777 DeepMRMD:1;iRNA_m5C:0.999536710864002 36778 chr17 64685129 64685129 1 + C T STAD 64685113 + 64685093 64685133 41 AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGATGAGG < 41bp 1 0.016016028610823 1 0.0277039110660553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64685113 chr17:64685129 synonymous SNV . 0 37 hm5C_associated_SNPs_37236 0 0 1 0 2 Ribosome 1 0.500231643920961 1 0.999536712158078 hm5C_site_36778 DeepMRMD:1;iRNA_m5C:0.999536712158078 36779 chr4 154236715 154236715 1 + C T STAD 154236725 + 154236705 154236745 41 ATATTAATTGCAGACAGTAACAACCAATGTGTGCAGGTATA ATATTAATTGTAGACAGTAACAACCAATGTGTGCAGGTATA < 41bp 1 0.185170582010653 1 0.0842248201370239 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154236725 chr4:154236715 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_37237 0 0 0 0 2 Ribosome 1 0.500231642682153 1 0.999536714635695 hm5C_site_36779 DeepMRMD:1;iRNA_m5C:0.999536714635695 36780 chr1 249212032 249212032 1 + A G STAD 249212016 + 249211996 249212036 41 AGTGAGGAGATCATCGTGTGCCGCTGGCACGATAGCAGCGT AGTGAGGAGATCATCGTGTGCCGCTGGCACGATAGCGGCGT < 41bp 1 0.461084443882863 1 0.1364606320858 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212016 chr1:249212032 nonsynonymous SNV 0.565 0 37 hm5C_associated_SNPs_37238 0 0 0 0 0 Cytosol 1 0.500231643467962 1 0.999536713064076 hm5C_site_36780 DeepMRMD:1;iRNA_m5C:0.999536713064076 36781 chr1 94964197 94964197 1 + G A STAD 94964179 + 94964159 94964199 41 TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATAGC < 41bp 1 0.503551468148848 1 0.238756865262985 experiment 0.992897063702305 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964179 chr1:94964197 nonsynonymous SNV 0.998 5 39 hm5C_associated_SNPs_37239 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36781 DeepMRMD:1;iRNA_m5C:0.999536712157815 36782 chr9 134021655 134021655 1 + G A STAD 134021668 + 134021648 134021688 41 TAGTTCCGTGCCATTGAAGTCCTCAGTCTTGCCCTCACCAT TAGTTCCATGCCATTGAAGTCCTCAGTCTTGCCCTCACCAT < 41bp 1 0.230840137145457 1 0.0590619444847107 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP214 ENSG00000126883 CDS Human protein_coding chr9:134021668 chr9:134021655 nonsynonymous SNV 0.003 0 8 hm5C_associated_SNPs_37240 0 0 0 0 1 Cytosol 1 0.500231644690676 1 0.999536710618647 hm5C_site_36782 DeepMRMD:1;iRNA_m5C:0.999536710618647 36783 chr17 48631744 48631744 1 + G A STAD 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCATCG < 41bp 1 0.0425861914768332 1 0.0114866495132446 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631744 nonsynonymous SNV 0.936 0 38 hm5C_associated_SNPs_37241 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36783 DeepMRMD:1;iRNA_m5C:0.999536712157815 36784 chr17 43323028 43323028 1 + C T STAD 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTTGGAGAGAACCCCAAGACCACATCCCCAGG < 41bp 1 0.450258133522463 1 0.220266461372375 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323037 chr17:43323028 synonymous SNV . 0 12 hm5C_associated_SNPs_37243 0 0 0 0 3 chromatin 1 0.500231643920751 1 0.999536712158497 hm5C_site_36784 DeepMRMD:1;iRNA_m5C:0.999536712158497 36785 chr2 32773057 32773057 1 + G C STAD 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGACGAACAT < 41bp 1 0.195118420863802 1 0.701326549053192 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773057 nonsynonymous SNV 0.979 3 35 hm5C_associated_SNPs_37244 0 0 1 0 1 Nucleus 1 0.500231644032683 0.597346901893616 0.999536711934635 hm5C_site_36785 DeepMRMD:0.597346901893616;iRNA_m5C:0.999536711934635 36786 chr1 113241043 113241043 1 + G A STAD 113241053 + 113241033 113241073 41 CCTCCAAGAAGGGCAAAGCTCGCCTGAGCCCTCGAAGTGTG CCTCCAAGAAAGGCAAAGCTCGCCTGAGCCCTCGAAGTGTG < 41bp 1 0.659998975105092 1 0.163508981466293 experiment 0.680002049789817 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MOV10 ENSG00000155363 CDS Human protein_coding chr1:113241053 chr1:113241043 synonymous SNV . 0 11 hm5C_associated_SNPs_37245 0 0 1 0 1 Cytosol 1 0.500231643921104 1 0.999536712157793 hm5C_site_36786 DeepMRMD:1;iRNA_m5C:0.999536712157793 36787 chr1 24996760 24996760 1 + C T STAD 24996751 + 24996731 24996771 41 ACCGTCTACAAACTGGTCACCAGCTGTACCGGTCAAAAAGG ACCGTCTACAAACTGGTCACCAGCTGTACTGGTCAAAAAGG < 41bp 1 0.479260065513382 1 0.559412240982056 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996751 chr1:24996760 nonsynonymous SNV 0.955 2 30 hm5C_associated_SNPs_37246 0 0 1 0 0 Cytosol 1 0.500231643915437 0.881175518035888 0.999536712169125 hm5C_site_36787 DeepMRMD:0.881175518035888;iRNA_m5C:0.999536712169125 36788 chr12 109547639 109547639 1 + G A STAD 109547637 + 109547617 109547657 41 TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTACAGACG TTCTTGATCTTTTTCAGAAGCGACACCATGTACTACAGACG < 41bp 1 0.432717636920497 1 0.370968371629715 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547637 chr12:109547639 synonymous SNV . 0 23 hm5C_associated_SNPs_37247 0 0 1 0 1 Ribosome 1 0.50023164394124 1 0.99953671211752 hm5C_site_36788 DeepMRMD:1;iRNA_m5C:0.99953671211752 36789 chr10 5937131 5937131 1 + C G STAD 5937118 + 5937098 5937138 41 GAGATGCCAGAGGACGAGTGCCCACTTGCTGGTCTTCACAG GAGATGCCAGAGGACGAGTGCCCACTTGCTGGTGTTCACAG < 41bp 1 0.122025698762588 1 0.0631823241710663 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5937118 chr10:5937131 synonymous SNV . 0 34 hm5C_associated_SNPs_37248 0 0 0 0 1 Ribosome 1 0.500231611797355 1 0.99953677640529 hm5C_site_36789 DeepMRMD:1;iRNA_m5C:0.99953677640529 36790 chr1 41475868 41475868 1 + C A STAD 41475860 + 41475840 41475880 41 TATAGTGACAGGAGTGGAAGCAGCTCCCCTGACTCTGAAAT TATAGTGACAGGAGTGGAAGCAGCTCCCATGACTCTGAAAT < 41bp 1 0.334292721788256 1 0.811001420021057 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41475860 chr1:41475868 nonsynonymous SNV 0.998 4 29 hm5C_associated_SNPs_37249 0 0 1 0 1 Nucleus 1 0.50023164392108 0.377997159957886 0.999536712157841 hm5C_site_36790 DeepMRMD:0.377997159957886;iRNA_m5C:0.999536712157841 36791 chr10 104160788 104160788 1 + C T STAD 104160790 + 104160770 104160810 41 GGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA GGGTACCCGACCCTCACCTGCCTCCTTCTGAAGGCTGGTCA < 41bp 1 0.0492588443622699 1 0.0797241032123566 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160790 chr10:104160788 nonsynonymous SNV 0.931 2 19 hm5C_associated_SNPs_37250 0 0 1 0 2 chromatin 1 0.500231643921175 1 0.99953671215765 hm5C_site_36791 DeepMRMD:1;iRNA_m5C:0.99953671215765 36792 chr17 37075003 37075003 1 + T C STAD 37075006 + 37074986 37075026 41 CGGCGACACGGGGATGCTGCCGGCCAACTACGTGGAGGCCA CGGCGACACGGGGATGCCGCCGGCCAACTACGTGGAGGCCA < 41bp 1 0.562590752891973 1 0.778360366821289 experiment 0.874818494216055 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37075006 chr17:37075003 nonsynonymous SNV 0.996 3 18 hm5C_associated_SNPs_37251 0 0 1 0 0 Cytosol 1 0.500231643921092 0.443279266357422 0.999536712157815 hm5C_site_36792 DeepMRMD:0.443279266357422;iRNA_m5C:0.999536712157815 36793 chr19 50285894 50285894 1 + G C STAD 50285882 + 50285862 50285902 41 TGACCTGGCCAGCCGCAACCCCACCTTCATGTGCCTGGCCC TGACCTGGCCAGCCGCAACCCCACCTTCATGTCCCTGGCCC < 41bp 1 0.254011135070828 1 0.232338100671768 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50285882 chr19:50285894 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_37252 0 0 1 0 1 Ribosome 1 0.500231643909165 1 0.99953671218167 hm5C_site_36793 DeepMRMD:1;iRNA_m5C:0.99953671218167 36794 chr22 32234822 32234822 1 + T C STAD 32234816 + 32234796 32234836 41 CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG CGCCCCCGCTGAGCAGTAGCCCACTCCATAGCCGAGGTGAG < 41bp 1 0.11462158215946 1 0.0971682369709015 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32234816 chr22:32234822 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_37253 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36794 DeepMRMD:1;iRNA_m5C:0.999536712157815 36795 chr2 242695360 242695360 1 + G A STAD 242695362 + 242695342 242695382 41 CCTGTGGAGCGGCTCTACGACATCGTGACTGACCTGCGCGC CCTGTGGAGCGGCTCTACAACATCGTGACTGACCTGCGCGC < 41bp 1 0.625089110895251 1 0.194612354040146 experiment 0.749821778209499 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242695362 chr2:242695360 nonsynonymous SNV 0.048 0 19 hm5C_associated_SNPs_37254 0 0 1 0 1 Ribosome 1 0.500231643936445 1 0.999536712127111 hm5C_site_36795 DeepMRMD:1;iRNA_m5C:0.999536712127111 36796 chr10 103919306 103919306 1 + A C STAD 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGACGAGGAAGAGGAGCAAAAAAACCCCATGAAAAAT < 41bp 1 0.525123513022072 1 0.467539638280869 experiment 0.949752973955856 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919306 nonsynonymous SNV 0.467 2 29 hm5C_associated_SNPs_37255 0 0 1 0 1 Nucleus 1 0.500231644001376 1 0.999536711997248 hm5C_site_36796 DeepMRMD:1;iRNA_m5C:0.999536711997248 36797 chr5 92923699 92923699 1 + C T STAD 92923717 + 92923697 92923737 41 AACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT AATGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT < 41bp 1 0.370597391495446 1 0.370802104473114 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92923717 chr5:92923699 synonymous SNV . 0 3 hm5C_associated_SNPs_37256 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_36797 DeepMRMD:1;iRNA_m5C:0.999536712157816 36798 chr11 61404412 61404412 1 + C A STAD 61404392 + 61404372 61404412 41 CTCTGGAGAAACTGCTGCCTCGCATCTGGGAGAATGTGGGC CTCTGGAGAAACTGCTGCCTCGCATCTGGGAGAATGTGGGA < 41bp 1 0.54149039568036 1 0.28615403175354 experiment 0.917019208639279 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404392 chr11:61404412 . . 0 41 hm5C_associated_SNPs_37257 0 0 0 0 0 unknown 1 0.500231643921146 1 0.999536712157708 hm5C_site_36798 DeepMRMD:1;iRNA_m5C:0.999536712157708 36799 chr11 61404412 61404412 1 + C A STAD 61404394 + 61404374 61404414 41 CTGGAGAAACTGCTGCCTCGCATCTGGGAGAATGTGGGCTT CTGGAGAAACTGCTGCCTCGCATCTGGGAGAATGTGGGATT < 41bp 1 0.244627806448921 1 0.191420465707779 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404394 chr11:61404412 . . 0 39 hm5C_associated_SNPs_37258 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_36799 DeepMRMD:1;iRNA_m5C:0.999536712157815 36800 chr4 53579473 53579473 1 + G C STAD 53579455 + 53579435 53579475 41 CCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAAGTC CCAGTGCTTTAAGAGGCTAACACAGAAGGGTAAAGTAACTC < 41bp 1 0.379777183521482 1 0.301655769348145 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579455 chr4:53579473 . . 0 39 hm5C_associated_SNPs_37259 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_36800 DeepMRMD:1;iRNA_m5C:0.999536712157815 36801 chr4 53579473 53579473 1 + G C STAD 53579475 + 53579455 53579495 41 CACAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGA CACAGAAGGGTAAAGTAACTCTCCATAAAACCCAGAGAAGA < 41bp 1 0.687985559422655 1 0.962897002696991 experiment 0.62402888115469 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579475 chr4:53579473 . . 0 19 hm5C_associated_SNPs_37261 0 0 1 2 0 unknown 1 0.500231643695213 0.0742059946060181 0.999536712609574 hm5C_site_36801 DeepMRMD:0.0742059946060181;iRNA_m5C:0.999536712609574 36802 chr4 53579473 53579473 1 + G C STAD 53579477 + 53579457 53579497 41 CAGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGA CAGAAGGGTAAAGTAACTCTCCATAAAACCCAGAGAAGAGA < 41bp 1 0.145570586005972 1 0.152870982885361 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579477 chr4:53579473 . . 0 17 hm5C_associated_SNPs_37262 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_36802 DeepMRMD:1;iRNA_m5C:0.999536712157815 36803 chr4 53579473 53579473 1 + G C STAD 53579478 + 53579458 53579498 41 AGAAGGGTAAAGTAAGTCTCCATAAAACCCAGAGAAGAGAC AGAAGGGTAAAGTAACTCTCCATAAAACCCAGAGAAGAGAC < 41bp 1 0.274528943030709 1 0.20136097073555 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579478 chr4:53579473 . . 0 16 hm5C_associated_SNPs_37263 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_36803 DeepMRMD:1;iRNA_m5C:0.999536712157815 36804 chr4 53579473 53579473 1 + G C STAD 53579485 + 53579465 53579505 41 TAAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAG TAAAGTAACTCTCCATAAAACCCAGAGAAGAGACTGGAAAG < 41bp 1 0.290117636397595 1 0.13501387834549 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579485 chr4:53579473 . . 0 9 hm5C_associated_SNPs_37264 0 0 1 2 0 unknown 1 0.500231643919857 1 0.999536712160286 hm5C_site_36804 DeepMRMD:1;iRNA_m5C:0.999536712160286 36805 chr4 53579473 53579473 1 + G C STAD 53579486 + 53579466 53579506 41 AAAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGC AAAGTAACTCTCCATAAAACCCAGAGAAGAGACTGGAAAGC < 41bp 1 0.470901960180106 1 0.2088742852211 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579486 chr4:53579473 . . 0 8 hm5C_associated_SNPs_37265 0 0 1 2 0 unknown 1 0.500231643858251 1 0.999536712283498 hm5C_site_36805 DeepMRMD:1;iRNA_m5C:0.999536712283498 36806 chr4 53579473 53579473 1 + G C STAD 53579487 + 53579467 53579507 41 AAGTAAGTCTCCATAAAACCCAGAGAAGAGACTGGAAAGCT AAGTAACTCTCCATAAAACCCAGAGAAGAGACTGGAAAGCT < 41bp 1 0.375152705981519 1 0.461212545633316 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA26 ENSG00000212588 ncRNA_exonic Human snoRNA chr4:53579487 chr4:53579473 . . 0 7 hm5C_associated_SNPs_37266 0 0 1 2 0 unknown 1 0.500231642675519 1 0.999536714648962 hm5C_site_36806 DeepMRMD:1;iRNA_m5C:0.999536714648962 36807 chr5 1036427 1036427 1 + G A STAD 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG AAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG < 41bp 1 0.192927289580111 1 0.142615884542465 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036427 nonsynonymous SNV 0.991 4 1 hm5C_associated_SNPs_37267 0 0 0 0 2 exosome 1 0.500231643921164 1 0.999536712157671 hm5C_site_36807 DeepMRMD:1;iRNA_m5C:0.999536712157671 36808 chr6 53660207 53660207 1 + G A STAD 53660192 + 53660172 53660212 41 GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGA GAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTACCCGA < 41bp 1 0.49613084308332 1 0.340017318725586 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660192 chr6:53660207 synonymous SNV . 0 36 hm5C_associated_SNPs_37269 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36808 DeepMRMD:1;iRNA_m5C:0.999536712157815 36809 chr21 45544600 45544600 1 + G A STAD 45544584 + 45544564 45544604 41 AAGAGGTTCGAGATCTCTTGCAACCTGTCTTTGGACGCCAT AAGAGGTTCGAGATCTCTTGCAACCTGTCTTTGGACACCAT < 41bp 1 0.242870672307657 1 0.147067457437515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45544584 chr21:45544600 nonsynonymous SNV 0.983 4 37 hm5C_associated_SNPs_37270 0 0 1 0 1 Nucleus 1 0.500231643921994 1 0.999536712156011 hm5C_site_36809 DeepMRMD:1;iRNA_m5C:0.999536712156011 36810 chr11 988612 988612 1 + C T STAD 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACTGC < 41bp 1 0.693726418689169 1 0.404895514249802 experiment 0.612547162621661 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988612 nonsynonymous SNV 0.997 4 39 hm5C_associated_SNPs_37271 0 0 1 0 2 Nucleus 1 0.500231643921604 1 0.999536712156792 hm5C_site_36810 DeepMRMD:1;iRNA_m5C:0.999536712156792 36811 chr1 41289877 41289877 1 + G A STAD 41289886 + 41289866 41289906 41 TCCCGTTACCCGCCCGTTGCCACCTGCCACCGGCCGGGCAG TCCCGTTACCCACCCGTTGCCACCTGCCACCGGCCGGGCAG < 41bp 1 0.673100258866604 1 0.206561654806137 experiment 0.653799482266792 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41289886 chr1:41289877 synonymous SNV . 0 12 hm5C_associated_SNPs_37272 0 0 0 0 1 chromatin 1 0.500231643921098 1 0.999536712157804 hm5C_site_36811 DeepMRMD:1;iRNA_m5C:0.999536712157804 36812 chrX 100668147 100668147 1 + G A STAD 100668159 + 100668139 100668179 41 GTGGTGGCGCTTATGGTAGCCAAATGATGGGAGGGATGGGC GTGGTGGCACTTATGGTAGCCAAATGATGGGAGGGATGGGC < 41bp 1 0.467865498958921 1 0.779251337051392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HNRNPH2 ENSG00000126945 CDS Human protein_coding chrX:100668159 chrX:100668147 nonsynonymous SNV 0.999 2 9 hm5C_associated_SNPs_37274 1 0 1 0 0 Cytosol 1 0.500231643921092 0.441497325897216 0.999536712157815 hm5C_site_36812 DeepMRMD:0.441497325897216;iRNA_m5C:0.999536712157815 not specified not specified 36813 chr5 14280525 14280525 1 + C A STAD 14280517 + 14280497 14280537 41 GACAGGAGGATCTCAGGAGACTCATTTCCTATCTAGCCTGT GACAGGAGGATCTCAGGAGACTCATTTCATATCTAGCCTGT < 41bp 1 0.289232929873744 1 0.0913501381874084 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14280517 chr5:14280525 synonymous SNV . 0 29 hm5C_associated_SNPs_37275 0 0 1 0 2 Nucleus 1 0.500231643614292 1 0.999536712771416 hm5C_site_36813 DeepMRMD:1;iRNA_m5C:0.999536712771416 36814 chr5 156819995 156819995 1 + C T STAD 156819998 + 156819978 156820018 41 CATCCACCAGTCCTTGGCCACCACTTGCTAAGCAGAAGATC CATCCACCAGTCCTTGGTCACCACTTGCTAAGCAGAAGATC < 41bp 1 0.117943298058438 1 0.112164825201035 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156819998 chr5:156819995 nonsynonymous SNV 0.999 3 18 hm5C_associated_SNPs_37276 0 0 1 0 0 Cytosol 1 0.500231947429186 1 0.999536105141628 hm5C_site_36814 DeepMRMD:1;iRNA_m5C:0.999536105141628 36815 chr19 36510151 36510151 1 + C T STAD 36510139 + 36510119 36510159 41 ATCGTTCTTGCCCTCAGGTTCGTCCAGCTCCACGCCCACCC ATCGTTCTTGCCCTCAGGTTCGTCCAGCTCCATGCCCACCC < 41bp 1 0.23517564582224 1 0.0543162226676941 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510139 chr19:36510151 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_37277 0 0 0 0 1 unknown 1 0.50023164392109 1 0.99953671215782 hm5C_site_36815 DeepMRMD:1;iRNA_m5C:0.99953671215782 36816 chr19 36510151 36510151 1 + C T STAD 36510143 + 36510123 36510163 41 TTCTTGCCCTCAGGTTCGTCCAGCTCCACGCCCACCCACTG TTCTTGCCCTCAGGTTCGTCCAGCTCCATGCCCACCCACTG < 41bp 1 0.409343372673741 1 0.711740255355835 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510143 chr19:36510151 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_37278 0 0 0 0 1 unknown 1 0.500231643921092 0.57651948928833 0.999536712157815 hm5C_site_36816 DeepMRMD:0.57651948928833;iRNA_m5C:0.999536712157815 36817 chr17 37650838 37650838 1 + A G STAD 37650826 + 37650806 37650846 41 CTAGACAATGAGAAAGAGGGCTTCCCAATCACAGCCATTCG CTAGACAATGAGAAAGAGGGCTTCCCAATCACGGCCATTCG < 41bp 1 0.0580007628709999 1 0.060857743024826 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37650826 chr17:37650838 synonymous SNV . 0 33 hm5C_associated_SNPs_37279 0 0 1 0 1 Nucleus 1 0.500231643921297 1 0.999536712157406 hm5C_site_36817 DeepMRMD:1;iRNA_m5C:0.999536712157406 36818 chr20 32439984 32439984 1 + C A STAD 32439982 + 32439962 32440002 41 CAGTCCCTCTACCAAATGTTCCCTCTATAGCCCTACCATCA CAGTCCCTCTACCAAATGTTCCATCTATAGCCCTACCATCA < 41bp 1 0.0415349097476653 1 0.0762052536010742 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32439982 chr20:32439984 synonymous SNV . 0 23 hm5C_associated_SNPs_37280 0 0 1 0 1 Ribosome 1 0.500231643926714 1 0.999536712146571 hm5C_site_36818 DeepMRMD:1;iRNA_m5C:0.999536712146571 36819 chr20 32439984 32439984 1 + C A STAD 32439983 + 32439963 32440003 41 AGTCCCTCTACCAAATGTTCCCTCTATAGCCCTACCATCAA AGTCCCTCTACCAAATGTTCCATCTATAGCCCTACCATCAA < 41bp 1 0.151670445928184 1 0.0385763049125671 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32439983 chr20:32439984 synonymous SNV . 0 22 hm5C_associated_SNPs_37281 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36819 DeepMRMD:1;iRNA_m5C:0.999536712157815 36820 chr10 105048249 105048249 1 + C A STAD 105048230 + 105048210 105048250 41 ACCTAGAATCCTCAGTGCTACAACCTCCAAAGTCTCATCCA ACCTAGAATCCTCAGTGCTACAACCTCCAAAGTCTCATCAA < 41bp 1 0.322941049509671 1 0.238584041595459 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INA ENSG00000148798 CDS Human protein_coding chr10:105048230 chr10:105048249 synonymous SNV . 0 40 hm5C_associated_SNPs_37282 0 0 1 0 0 exosome 1 0.500231643822665 1 0.999536712354669 hm5C_site_36820 DeepMRMD:1;iRNA_m5C:0.999536712354669 36821 chr11 57575890 57575890 1 + G A STAD 57575904 + 57575884 57575924 41 CTCTGCGTCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC CTCTGCATCAAGAGAAGGCTCTTTCTGCCATAGCTGACCTC < 41bp 1 0.0919659813626004 1 0.0578905940055847 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57575904 chr11:57575890 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_37283 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36821 DeepMRMD:1;iRNA_m5C:0.999536712157815 36822 chr4 128748490 128748490 1 + A G STAD 128748508 + 128748488 128748528 41 ACATGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG ACGTGGAGCATGAAGAGAGACCAAAAGCCTTAAATGACTTG < 41bp 1 0.310016349541192 1 0.174303561449051 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128748508 chr4:128748490 nonsynonymous SNV 0.999 0 3 hm5C_associated_SNPs_37284 0 0 0 0 2 Cytosol 1 0.50023164396443 1 0.99953671207114 hm5C_site_36822 DeepMRMD:1;iRNA_m5C:0.99953671207114 36823 chr7 4830444 4830444 1 + T C STAD 4830446 + 4830426 4830466 41 TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCACCGTGC TGCTGCCCTGCCCAGGTGCCCCCCCCAGGTGGTCACCGTGC < 41bp 1 0.0875202119682721 1 0.0321706831455231 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4830446 chr7:4830444 synonymous SNV . 0 19 hm5C_associated_SNPs_37285 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36823 DeepMRMD:1;iRNA_m5C:0.999536712157815 36824 chr9 139751877 139751877 1 + C T STAD 139751890 + 139751870 139751910 41 GATGTGGCCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTA GATGTGGTCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTA < 41bp 1 0.117472876081404 1 0.172374129295349 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751890 chr9:139751877 nonsynonymous SNV 0.005 0 8 hm5C_associated_SNPs_37286 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36824 DeepMRMD:1;iRNA_m5C:0.999536712157815 36825 chr9 139751877 139751877 1 + C T STAD 139751891 + 139751871 139751911 41 ATGTGGCCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTAC ATGTGGTCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTAC < 41bp 1 0.144444118012799 1 0.143221229314804 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751891 chr9:139751877 nonsynonymous SNV 0.005 0 7 hm5C_associated_SNPs_37287 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36825 DeepMRMD:1;iRNA_m5C:0.999536712157815 36826 chr9 139751877 139751877 1 + C T STAD 139751892 + 139751872 139751912 41 TGTGGCCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTACT TGTGGTCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTACT < 41bp 1 0.0721812563011441 1 0.118848383426666 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751892 chr9:139751877 nonsynonymous SNV 0.005 0 6 hm5C_associated_SNPs_37288 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36826 DeepMRMD:1;iRNA_m5C:0.999536712157815 36827 chr9 139751877 139751877 1 + C T STAD 139751893 + 139751873 139751913 41 GTGGCCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTACTG GTGGTCGTGCGGCCGGGCCCCTGCTGGGCCCCTAATTACTG < 41bp 1 0.541981254043926 1 0.24402317404747 experiment 0.916037491912147 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751893 chr9:139751877 nonsynonymous SNV 0.005 0 5 hm5C_associated_SNPs_37289 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36827 DeepMRMD:1;iRNA_m5C:0.999536712157815 36828 chr9 140100312 140100312 1 + C T STAD 140100319 + 140100299 140100339 41 CTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGT CTGGGTCGCGAGGTCCGGCGCCGGCGGCTTGGCTGCCGGGT < 41bp 1 0.37561977558161 1 0.679355621337891 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100319 chr9:140100312 nonsynonymous SNV 0.981 4 14 hm5C_associated_SNPs_37290 0 0 0 0 1 chromatin 1 0.500231643921116 0.641288757324218 0.999536712157768 hm5C_site_36828 DeepMRMD:0.641288757324218;iRNA_m5C:0.999536712157768 36829 chr9 140100312 140100312 1 + C T STAD 140100331 + 140100311 140100351 41 GCCCGGCGCCGGCGGCTTGGCTGCCGGGTGCAGGCCCTGGA GTCCGGCGCCGGCGGCTTGGCTGCCGGGTGCAGGCCCTGGA < 41bp 1 0.622972378730872 1 0.526534914970398 experiment 0.754055242538255 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100331 chr9:140100312 nonsynonymous SNV 0.981 4 2 hm5C_associated_SNPs_37292 0 0 0 0 1 chromatin 1 0.500231643921093 0.946930170059204 0.999536712157815 hm5C_site_36829 DeepMRMD:0.946930170059204;iRNA_m5C:0.999536712157815 36830 chr17 7463187 7463187 1 + T C STAD 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC AGCAGCACTCTGTCCTGCACCTGGCTCCCATTAACGCCACC < 41bp 1 0.328269076641446 1 0.677976608276367 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463187 nonsynonymous SNV 0.895 2 25 hm5C_associated_SNPs_37294 0 0 0 0 3 unknown 1 0.50023164392198 0.644046783447266 0.999536712156039 hm5C_site_36830 DeepMRMD:0.644046783447266;iRNA_m5C:0.999536712156039 36831 chr2 27662650 27662650 1 + C T STAD 27662638 + 27662618 27662658 41 TGTTTCCTTTTCTAGGAGTTCATTCAAAAGTGCCTGCAGTC TGTTTCCTTTTCTAGGAGTTCATTCAAAAGTGTCTGCAGTC < 41bp 1 0.0542884606596107 1 0.0514860153198242 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27662638 chr2:27662650 synonymous SNV . 0 33 hm5C_associated_SNPs_37295 0 0 1 0 1 Cytosol 1 0.500231650089498 1 0.999536699821003 hm5C_site_36831 DeepMRMD:1;iRNA_m5C:0.999536699821003 36832 chr11 118344459 118344459 1 + G A STAD 118344450 + 118344430 118344470 41 CAAGGCCCCCGAGGAGCTGTCCAAAGATCGAGATGCTGACA CAAGGCCCCCGAGGAGCTGTCCAAAGATCAAGATGCTGACA < 41bp 1 0.165120530320166 1 0.100528955459595 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118344450 chr11:118344459 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_37296 0 0 1 0 0 Cytosol 1 0.500231643424762 1 0.999536713150477 hm5C_site_36832 DeepMRMD:1;iRNA_m5C:0.999536713150477 36833 chr11 118344459 118344459 1 + G A STAD 118344469 + 118344449 118344489 41 TCCAAAGATCGAGATGCTGACAAGAGCGTGGAGAAGGACAA TCCAAAGATCAAGATGCTGACAAGAGCGTGGAGAAGGACAA < 41bp 1 0.498485861789432 1 0.431705594062805 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118344469 chr11:118344459 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_37297 0 0 1 0 0 Cytosol 1 0.500231643860154 1 0.999536712279692 hm5C_site_36833 DeepMRMD:1;iRNA_m5C:0.999536712279692 36834 chr11 118344459 118344459 1 + G A STAD 118344475 + 118344455 118344495 41 GATCGAGATGCTGACAAGAGCGTGGAGAAGGACAAGAGTAG GATCAAGATGCTGACAAGAGCGTGGAGAAGGACAAGAGTAG < 41bp 1 0.255351621222038 1 0.54785680770874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118344475 chr11:118344459 nonsynonymous SNV 1.000 0 5 hm5C_associated_SNPs_37298 0 0 1 0 0 Cytosol 1 0.500231643921093 0.90428638458252 0.999536712157815 hm5C_site_36834 DeepMRMD:0.90428638458252;iRNA_m5C:0.999536712157815 36835 chr10 102798404 102798404 1 + G A STAD 102798423 + 102798403 102798443 41 CGCCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGG CACCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGG < 41bp 1 0.177964196370721 1 0.454743146896362 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102798423 chr10:102798404 nonsynonymous SNV 0.996 0 2 hm5C_associated_SNPs_37299 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36835 DeepMRMD:1;iRNA_m5C:0.999536712157815 36836 chr22 24236713 24236713 1 + G T STAD 24236718 + 24236698 24236738 41 GCCTCCGTGCCGGACGGGTTCCTCTCCGAGCTCACCCAGCA GCCTCCGTGCCGGACTGGTTCCTCTCCGAGCTCACCCAGCA < 41bp 1 0.142710720749447 1 0.0452825427055359 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MIF ENSG00000240972 CDS Human protein_coding chr22:24236718 chr22:24236713 nonsynonymous SNV 0.982 3 16 hm5C_associated_SNPs_37300 0 0 1 0 1 Ribosome 1 0.50023164392109 1 0.999536712157819 hm5C_site_36836 DeepMRMD:1;iRNA_m5C:0.999536712157819 36837 chr1 977059 977059 1 + G A STAD 977045 + 977025 977065 41 GGGGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGG GGGGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCACTCCGG < 41bp 1 0.0956560707581162 1 0.464259535074234 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:977045 chr1:977059 nonsynonymous SNV 0.948 1 35 hm5C_associated_SNPs_37301 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36837 DeepMRMD:1;iRNA_m5C:0.999536712157815 36838 chr1 26135608 26135608 1 + C A STAD 26135615 + 26135595 26135635 41 GCCTGCCTGACTGCCATCAGCGACTTCTACTACACTGTGAT GCCTGCCTGACTGACATCAGCGACTTCTACTACACTGTGAT < 41bp 1 0.222940250075601 1 0.110582321882248 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26135615 chr1:26135608 nonsynonymous SNV 0.623 5 14 hm5C_associated_SNPs_37302 0 0 1 0 2 unknown 1 0.50023164392026 1 0.99953671215948 hm5C_site_36838 DeepMRMD:1;iRNA_m5C:0.99953671215948 36839 chr14 37739664 37739664 1 + A C STAD 37739679 + 37739659 37739699 41 AGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA AGAGACAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAA < 41bp 1 0.636101751516265 1 0.439152777194977 experiment 0.727796496967471 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37739679 chr14:37739664 nonsynonymous SNV 0.998 0 6 hm5C_associated_SNPs_37304 0 0 1 0 2 chromatin 1 0.50023164378504 1 0.999536712429919 hm5C_site_36839 DeepMRMD:1;iRNA_m5C:0.999536712429919 36840 chr9 139749902 139749902 1 + G A STAD 139749893 + 139749873 139749913 41 GCCCCCACAGAGGTGTCCACCCTGCAGCCGCTGCCTCCTGG GCCCCCACAGAGGTGTCCACCCTGCAGCCACTGCCTCCTGG < 41bp 1 0.0755609008118183 1 0.413055688142776 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139749893 chr9:139749902 synonymous SNV . 0 30 hm5C_associated_SNPs_37306 0 0 1 0 1 chromatin 1 0.500231643921076 1 0.999536712157849 hm5C_site_36840 DeepMRMD:1;iRNA_m5C:0.999536712157849 36841 chr5 179150668 179150668 1 + T C STAD 179150661 + 179150641 179150681 41 AGCCCTGTCTTGTTTTTCAGCCAGGCGTTGTGGGGCAGATG AGCCCTGTCTTGTTTTTCAGCCAGGCGCTGTGGGGCAGATG < 41bp 1 0.442034113403598 1 0.469599336385727 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179150661 chr5:179150668 nonsynonymous SNV 0.016 2 28 hm5C_associated_SNPs_37307 0 0 1 0 1 Nucleus 1 0.500231643920912 1 0.999536712158177 hm5C_site_36841 DeepMRMD:1;iRNA_m5C:0.999536712158177 36842 chr5 179150668 179150668 1 + T C STAD 179150666 + 179150646 179150686 41 TGTCTTGTTTTTCAGCCAGGCGTTGTGGGGCAGATGATCGA TGTCTTGTTTTTCAGCCAGGCGCTGTGGGGCAGATGATCGA < 41bp 1 0.520394519961639 1 0.325943529605865 experiment 0.959210960076722 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179150666 chr5:179150668 nonsynonymous SNV 0.016 2 23 hm5C_associated_SNPs_37308 0 0 1 0 1 Nucleus 1 0.500231622544576 1 0.999536754910849 hm5C_site_36842 DeepMRMD:1;iRNA_m5C:0.999536754910849 36843 chr5 179150668 179150668 1 + T C STAD 179150676 + 179150656 179150696 41 TTCAGCCAGGCGTTGTGGGGCAGATGATCGAGGCAGCTGAA TTCAGCCAGGCGCTGTGGGGCAGATGATCGAGGCAGCTGAA < 41bp 1 0.490651640247728 1 0.436599522829056 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179150676 chr5:179150668 nonsynonymous SNV 0.016 2 13 hm5C_associated_SNPs_37309 0 0 1 0 1 Nucleus 1 0.500231639730417 1 0.999536720539166 hm5C_site_36843 DeepMRMD:1;iRNA_m5C:0.999536720539166 36844 chr3 127335932 127335932 1 + G T STAD 127335929 + 127335909 127335949 41 GGGCCCTGGTTCTGGCTGACCGAGGAGTGTGTCTCATTGAT GGGCCCTGGTTCTGGCTGACCGATGAGTGTGTCTCATTGAT < 41bp 1 0.320822969011091 1 0.385497808456421 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127335929 chr3:127335932 stopgain 0.896 1 24 hm5C_associated_SNPs_37310 0 0 1 0 1 Cytosol 1 0.500232674717502 1 0.999534650564996 hm5C_site_36844 DeepMRMD:1;iRNA_m5C:0.999534650564996 36845 chr11 61488196 61488196 1 + G A STAD 61488204 + 61488184 61488224 41 GGTCTATAACCCGCACGAGGCCTGCTCCCTGAACCTGGTGG GGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGG < 41bp 1 0.0345224383990205 1 0.0208265483379364 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61488204 chr11:61488196 synonymous SNV . 0 13 hm5C_associated_SNPs_37311 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36845 DeepMRMD:1;iRNA_m5C:0.999536712157815 36846 chr13 113729379 113729379 1 + C T STAD 113729386 + 113729366 113729406 41 AACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA AACAAGCACTACGTGGTAGACTCCATCCGCCCAAAGTGCCA < 41bp 1 0.683457305546137 1 0.931654214859009 experiment 0.633085388907726 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113729386 chr13:113729379 nonsynonymous SNV 0.403 4 14 hm5C_associated_SNPs_37313 0 0 1 0 1 Cytosol 1 0.500231646476066 0.136691570281982 0.999536707047867 hm5C_site_36846 DeepMRMD:0.136691570281982;iRNA_m5C:0.999536707047867 36847 chr1 39823348 39823348 1 + G A STAD 39823346 + 39823326 39823366 41 AACATGCATAAGGGAGGCAGCAGCCCCGAGACCCTTCCCTC AACATGCATAAGGGAGGCAGCAACCCCGAGACCCTTCCCTC < 41bp 1 0.111081129391605 1 0.159772992134094 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39823346 chr1:39823348 nonsynonymous SNV 0.670 0 23 hm5C_associated_SNPs_37314 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36847 DeepMRMD:1;iRNA_m5C:0.999536712157815 36848 chr11 9451349 9451349 1 + A G STAD 9451359 + 9451339 9451379 41 TGAAGAAGTTACTCCTATTGCAGTAGAAATGACACAACATT TGAAGAAGTTGCTCCTATTGCAGTAGAAATGACACAACATT < 41bp 1 0.598137048207831 1 0.629086375236511 experiment 0.803725903584337 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9451359 chr11:9451349 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_37315 0 0 1 0 1 Cytosol 1 0.500231644012134 0.741827249526978 0.999536711975733 hm5C_site_36848 DeepMRMD:0.741827249526978;iRNA_m5C:0.999536711975733 36849 chr6 31713067 31713067 1 + G A STAD 31713049 + 31713029 31713069 41 TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGCCAGTG TAAGAGTGAGTCTCACCCCTCAGTGTACAAAGTGGCCAATG < 41bp 1 0.356184528147775 1 0.373444795608521 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MSH5 ENSG00000204410;ENSG00000255152 CDS Human other chr6:31713049 chr6:31713067 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_37316 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36849 DeepMRMD:1;iRNA_m5C:0.999536712157815 36850 chr9 134354725 134354725 1 + C T STAD 134354717 + 134354697 134354737 41 AGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCT AGAACAACTTATGTCTGGAGCAAGGTGATGTGACCGTGCCT < 41bp 1 0.324532230207404 1 0.773211240768433 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354717 chr9:134354725 synonymous SNV . 0 29 hm5C_associated_SNPs_37317 0 0 1 0 1 Nucleus 1 0.500231643921092 0.453577518463134 0.999536712157815 hm5C_site_36850 DeepMRMD:0.453577518463134;iRNA_m5C:0.999536712157815 36851 chr9 134354725 134354725 1 + C T STAD 134354743 + 134354723 134354763 41 GACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG GATGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG < 41bp 1 0.309619797565235 1 0.621980965137482 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354743 chr9:134354725 synonymous SNV . 0 3 hm5C_associated_SNPs_37318 0 0 1 0 1 Nucleus 1 0.5002316439211 0.756038069725036 0.999536712157799 hm5C_site_36851 DeepMRMD:0.756038069725036;iRNA_m5C:0.999536712157799 36852 chr5 149925026 149925026 1 + A G STAD 149925006 + 149924986 149925026 41 CCCAAAGCCAAGGTCCTGACCATCCTCATCAACCCCGCGGA CCCAAAGCCAAGGTCCTGACCATCCTCATCAACCCCGCGGG < 41bp 1 0.147436076243773 1 0.0428634285926819 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDST1 ENSG00000070614 CDS Human protein_coding chr5:149925006 chr5:149925026 nonsynonymous SNV 0.995 4 41 hm5C_associated_SNPs_37319 0 0 1 0 1 Cytosol 1 0.500232354610388 1 0.999535290779223 hm5C_site_36852 DeepMRMD:1;iRNA_m5C:0.999535290779223 36853 chr6 15496729 15496729 1 + C T STAD 15496746 + 15496726 15496766 41 GGGCGGCAGCTGCGGGAGGGCCTGCAGCTGCGGGAGGGGCT GGGTGGCAGCTGCGGGAGGGCCTGCAGCTGCGGGAGGGGCT < 41bp 1 0.0742527494618403 1 0.202493488788605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15496746 chr6:15496729 nonsynonymous SNV 1.000 5 4 hm5C_associated_SNPs_37320 0 0 1 0 0 Cytosol 1 0.500231643919496 1 0.999536712161009 hm5C_site_36853 DeepMRMD:1;iRNA_m5C:0.999536712161009 36854 chr7 100732016 100732016 1 + A C STAD 100732032 + 100732012 100732052 41 GCCCAGCCCAGCCCTGGGGCCGAATCTGGACGGCTCTGGCC GCCCCGCCCAGCCCTGGGGCCGAATCTGGACGGCTCTGGCC < 41bp 1 0.249698302328079 1 0.285668909549713 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100732032 chr7:100732016 nonsynonymous SNV 0.975 2 5 hm5C_associated_SNPs_37321 0 0 1 0 0 nucleus 1 0.500231643921095 1 0.999536712157811 hm5C_site_36854 DeepMRMD:1;iRNA_m5C:0.999536712157811 36855 chr7 4823848 4823848 1 + C T STAD 4823834 + 4823814 4823854 41 CCTGCCTGTCCTTCCCACAGCCGGGCCCCGTCACCGAGGTG CCTGCCTGTCCTTCCCACAGCCGGGCCCCGTCACTGAGGTG < 41bp 1 0.336643966821656 1 0.653359055519104 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4823834 chr7:4823848 synonymous SNV . 0 35 hm5C_associated_SNPs_37322 0 0 1 0 1 chromatin 1 0.50023164393485 0.693281888961792 0.9995367121303 hm5C_site_36855 DeepMRMD:0.693281888961792;iRNA_m5C:0.9995367121303 36856 chr1 228879181 228879181 1 + C T STAD 228879178 + 228879158 228879198 41 CACTGTCCCAAAGCCCCCATCATCCTAGTTGGAACGCAGTC CACTGTCCCAAAGCCCCCATCATTCTAGTTGGAACGCAGTC < 41bp 1 0.0452515047644708 1 0.183845072984695 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RHOU ENSG00000116574 CDS Human protein_coding chr1:228879178 chr1:228879181 synonymous SNV . 0 24 hm5C_associated_SNPs_37323 0 0 1 0 0 Ribosome 1 0.500231643921412 1 0.999536712157175 hm5C_site_36856 DeepMRMD:1;iRNA_m5C:0.999536712157175 36857 chr16 67662336 67662336 1 + T C STAD 67662319 + 67662299 67662339 41 CACCCACACCGGGGAGAAGCCTTACGCCTGCAGCCACTGCG CACCCACACCGGGGAGAAGCCTTACGCCTGCAGCCACCGCG < 41bp 1 0.29678051348307 1 0.110505312681198 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CTCF ENSG00000102974 CDS Human protein_coding chr16:67662319 chr16:67662336 nonsynonymous SNV 1.000 5 38 hm5C_associated_SNPs_37324 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36857 DeepMRMD:1;iRNA_m5C:0.999536712157815 36858 chr1 109806835 109806835 1 + G A STAD 109806832 + 109806812 109806852 41 CACTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCC CACTGGGAGCCAGCGGGGGGCCCAGCCATGCCATTCTGTCC < 41bp 1 0.0614639787568557 1 0.159282833337784 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806832 chr1:109806835 nonsynonymous SNV 0.774 0 24 hm5C_associated_SNPs_37325 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36858 DeepMRMD:1;iRNA_m5C:0.999536712157815 36859 chr1 109806835 109806835 1 + G A STAD 109806833 + 109806813 109806853 41 ACTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCCT ACTGGGAGCCAGCGGGGGGCCCAGCCATGCCATTCTGTCCT < 41bp 1 0.109371055930218 1 0.091526597738266 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806833 chr1:109806835 nonsynonymous SNV 0.774 0 23 hm5C_associated_SNPs_37326 0 0 0 0 0 Endoplasmic reticulum 1 0.500231647970373 1 0.999536704059254 hm5C_site_36859 DeepMRMD:1;iRNA_m5C:0.999536704059254 36860 chr1 109806835 109806835 1 + G A STAD 109806834 + 109806814 109806854 41 CTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCCTT CTGGGAGCCAGCGGGGGGCCCAGCCATGCCATTCTGTCCTT < 41bp 1 0.282995458523817 1 0.137457519769669 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806834 chr1:109806835 nonsynonymous SNV 0.774 0 22 hm5C_associated_SNPs_37327 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36860 DeepMRMD:1;iRNA_m5C:0.999536712157815 36861 chr1 12061540 12061540 1 + G A STAD 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCCGGGGACCACATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.307612318663909 1 0.232191234827042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061540 nonsynonymous SNV 0.943 2 17 hm5C_associated_SNPs_37328 0 0 1 0 2 Ribosome 1 0.500231642646709 1 0.999536714706583 hm5C_site_36861 DeepMRMD:1;iRNA_m5C:0.999536714706583 36862 chr12 95694231 95694231 1 + A G STAD 95694232 + 95694212 95694252 41 AGCAGATGGAAGTGGTCTGACCACTGCCCCTCCAACTCCCA AGCAGATGGAAGTGGTCTGGCCACTGCCCCTCCAACTCCCA < 41bp 1 0.335756206608126 1 0.0747506022453308 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95694232 chr12:95694231 nonsynonymous SNV 0.001 0 20 hm5C_associated_SNPs_37329 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643913718 1 0.999536712172563 hm5C_site_36862 DeepMRMD:1;iRNA_m5C:0.999536712172563 36863 chr12 52635388 52635388 1 + C T STAD 52635378 + 52635358 52635398 41 GCGCAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC GCGCAGTATGAGGAGATGGCCAAATGCAGCTGGGCTGAGGC < 41bp 1 0.32343431897121 1 0.658823847770691 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52635378 chr12:52635388 nonsynonymous SNV 0.964 1 31 hm5C_associated_SNPs_37330 0 0 0 0 1 Cytosol 1 0.50010939684635 0.682352304458618 0.9997812063073 hm5C_site_36863 DeepMRMD:0.682352304458618;iRNA_m5C:0.9997812063073 36864 chr17 55191844 55191844 1 + G A STAD 55191830 + 55191810 55191850 41 CCCTCTACAGCTCATGCTGCCTGATGGCATCACCGTGGAGG CCCTCTACAGCTCATGCTGCCTGATGGCATCACCATGGAGG < 41bp 1 0.23091773814871 1 0.121356278657913 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191830 chr17:55191844 nonsynonymous SNV 0.995 4 35 hm5C_associated_SNPs_37331 0 0 1 1 1 Endoplasmic reticulum 1 0.500231949843796 1 0.999536100312408 hm5C_site_36864 DeepMRMD:1;iRNA_m5C:0.999536100312408 36865 chr16 68104958 68104958 1 + C T STAD 68104973 + 68104953 68104993 41 TCTTCCTCAAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG TCTTCTTCAAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG < 41bp 1 0.223967672391383 1 0.536414206027985 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104973 chr16:68104958 nonsynonymous SNV 0.993 2 6 hm5C_associated_SNPs_37332 0 0 1 0 1 Ribosome 1 0.500231643921093 0.92717158794403 0.999536712157815 hm5C_site_36865 DeepMRMD:0.92717158794403;iRNA_m5C:0.999536712157815 36866 chr14 102466418 102466418 1 + G A STAD 102466414 + 102466394 102466434 41 GGACGACAGAGAGAAGTGTGCAAAGGCCAAGGAGGCGCTGG GGACGACAGAGAGAAGTGTGCAAAAGCCAAGGAGGCGCTGG < 41bp 1 0.292567612810829 1 0.453779608011246 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466414 chr14:102466418 synonymous SNV . 0 25 hm5C_associated_SNPs_37333 0 0 1 0 2 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_36866 DeepMRMD:1;iRNA_m5C:0.999536712157818 36867 chr6 43110015 43110015 1 + G A STAD 43110021 + 43110001 43110041 41 AACATCAAGCACACGGAGGCCCCCCTCTATGTCGTGGGTAT AACATCAAGCACACAGAGGCCCCCCTCTATGTCGTGGGTAT < 41bp 1 0.0643036436261593 1 0.0610034763813019 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK7 ENSG00000112655 CDS Human protein_coding chr6:43110021 chr6:43110015 synonymous SNV . 0 15 hm5C_associated_SNPs_37334 0 0 1 0 1 Endoplasmic reticulum 1 0.500231640362604 1 0.999536719274791 hm5C_site_36867 DeepMRMD:1;iRNA_m5C:0.999536719274791 36868 chr16 30990956 30990956 1 + G A STAD 30990965 + 30990945 30990985 41 ACAGAGACATCGGACGAGGCCGAGCGCCCTAGGCCCCTGCT ACAGAGACATCAGACGAGGCCGAGCGCCCTAGGCCCCTGCT < 41bp 1 0.257671577157773 1 0.678057551383972 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30990965 chr16:30990956 synonymous SNV . 0 12 hm5C_associated_SNPs_37335 0 0 1 0 0 Cytosol 1 0.500231656311258 0.643884897232056 0.999536687377485 hm5C_site_36868 DeepMRMD:0.643884897232056;iRNA_m5C:0.999536687377485 36869 chr11 57373915 57373915 1 + C A STAD 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAAGAAAACAAGAATGGAACCCTTTCACTTCAAAAACTCA < 41bp 1 0.0223763111114849 1 0.0559302866458893 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373915 synonymous SNV . 0 11 hm5C_associated_SNPs_37336 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36869 DeepMRMD:1;iRNA_m5C:0.999536712157815 36870 chr11 57373915 57373915 1 + C A STAD 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAAGAAAACAAGAATGGAACCCTTTCACTTCAAAAACTCAG < 41bp 1 0.0107125082202018 1 0.112182140350342 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373915 synonymous SNV . 0 10 hm5C_associated_SNPs_37337 0 0 0 0 1 Endoplasmic reticulum 1 0.500231525534557 1 0.999536948930886 hm5C_site_36870 DeepMRMD:1;iRNA_m5C:0.999536948930886 36871 chr11 57373915 57373915 1 + C A STAD 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AAGAAAACAAGAATGGAACCCTTTCACTTCAAAAACTCAGT < 41bp 1 0.0144416597387536 1 0.0627893507480621 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373915 synonymous SNV . 0 9 hm5C_associated_SNPs_37338 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921176 1 0.999536712157647 hm5C_site_36871 DeepMRMD:1;iRNA_m5C:0.999536712157647 36872 chr11 57373915 57373915 1 + C A STAD 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACAAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA < 41bp 1 0.47653651852675 1 0.421852052211761 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373915 synonymous SNV . 0 3 hm5C_associated_SNPs_37339 0 0 0 0 1 Endoplasmic reticulum 1 0.500231645962427 1 0.999536708075147 hm5C_site_36872 DeepMRMD:1;iRNA_m5C:0.999536708075147 36873 chr8 145139196 145139196 1 + G T STAD 145139185 + 145139165 145139205 41 CTTGACCTGCTCAATCTCTTCCAGACCTTCTGCCAGAAAGG CTTGACCTGCTCAATCTCTTCCAGACCTTCTTCCAGAAAGG < 41bp 1 0.555916207986288 1 0.265614032745361 experiment 0.888167584027424 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139185 chr8:145139196 nonsynonymous SNV 0.998 3 32 hm5C_associated_SNPs_37340 0 0 1 0 1 Endoplasmic reticulum 1 0.500231641127406 1 0.999536717745187 hm5C_site_36873 DeepMRMD:1;iRNA_m5C:0.999536717745187 36874 chr19 19654586 19654586 1 + A G STAD 19654593 + 19654573 19654613 41 CCTGCCTACCTGGATGTGGGCCTCTGTCCCGACACCCGCTG CCTGCCTACCTGGGTGTGGGCCTCTGTCCCGACACCCGCTG < 41bp 1 0.144427346145845 1 0.0580305457115173 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19654593 chr19:19654586 nonsynonymous SNV 0.018 2 14 hm5C_associated_SNPs_37341 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36874 DeepMRMD:1;iRNA_m5C:0.999536712157815 36875 chr17 29560174 29560174 1 + T G STAD 29560175 + 29560155 29560195 41 TGGTCACAATGATGGGTGATCAAGGAGAACTCCCTATAGCG TGGTCACAATGATGGGTGAGCAAGGAGAACTCCCTATAGCG < 41bp 1 0.391118394905159 1 0.61098700761795 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29560175 chr17:29560174 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_37342 1 0 1 0 1 Nucleus 1 0.500231644526738 0.7780259847641 0.999536710946525 hm5C_site_36875 DeepMRMD:0.7780259847641;iRNA_m5C:0.999536710946525 Neurofibromatosis, type 1 Neurofibromatosis, type 1 36876 chr7 99702536 99702536 1 + C A STAD 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GAGATTCGGATCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA < 41bp 1 0.0184870683157214 1 0.0386918783187866 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702536 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_37343 0 0 1 0 2 Cytosol 1 0.500230343409705 1 0.999539313180589 hm5C_site_36876 DeepMRMD:1;iRNA_m5C:0.999539313180589 Diastolic blood pressure x alcohol consumption interaction (2df test) 36877 chr21 30715090 30715090 1 + G A STAD 30715106 + 30715086 30715126 41 TGTCGTCAGAGTGGTGGGATCTCAGATTTCTGTCAGCAGAT TGTCATCAGAGTGGTGGGATCTCAGATTTCTGTCAGCAGAT < 41bp 1 0.600217215329465 1 0.480631291866302 experiment 0.799565569341069 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BACH1 ENSG00000156273 CDS Human protein_coding chr21:30715106 chr21:30715090 nonsynonymous SNV 0.129 1 5 hm5C_associated_SNPs_37344 0 0 1 0 0 Cytosol 1 0.500231647648094 1 0.999536704703812 hm5C_site_36877 DeepMRMD:1;iRNA_m5C:0.999536704703812 36878 chr3 9488801 9488801 1 + G A STAD 9488809 + 9488789 9488829 41 AAAGAAAGAAGCGGCGGGATCAGCCCTTGGAACAGAGCAAC AAAGAAAGAAGCAGCGGGATCAGCCCTTGGAACAGAGCAAC < 41bp 1 0.296746685280123 1 0.50610214471817 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9488809 chr3:9488801 nonsynonymous SNV 0.984 5 13 hm5C_associated_SNPs_37345 0 0 1 0 1 Nucleus 1 0.500231643921124 0.98779571056366 0.999536712157752 hm5C_site_36878 DeepMRMD:0.98779571056366;iRNA_m5C:0.999536712157752 36879 chr14 50789395 50789395 1 + G A STAD 50789396 + 50789376 50789416 41 CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATCATGA CAAGATTCAGGCGATCGACACCACCGACTCTTGTATCATGA < 41bp 1 0.0990432394347703 1 0.134363204240799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789396 chr14:50789395 nonsynonymous SNV 0.788 5 20 hm5C_associated_SNPs_37347 0 0 1 0 1 Cytosol 1 0.500231640018384 1 0.999536719963231 hm5C_site_36879 DeepMRMD:1;iRNA_m5C:0.999536719963231 36880 chr19 48220236 48220236 1 + C T STAD 48220221 + 48220201 48220241 41 GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCCGCAAA GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCTGCAAA < 41bp 1 0.510093892277872 1 0.528717935085297 experiment 0.979812215444255 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EHD2 ENSG00000024422 CDS Human protein_coding chr19:48220221 chr19:48220236 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_37348 0 0 0 0 1 Nucleus 1 0.500231643921094 0.942564129829406 0.999536712157812 hm5C_site_36880 DeepMRMD:0.942564129829406;iRNA_m5C:0.999536712157812 36881 chr19 14561788 14561788 1 + C T STAD 14561797 + 14561777 14561817 41 GGGGAGCTGCCCGCCGACCACCCCAAGGGGCGGCTGCTGCG GGGGAGCTGCCTGCCGACCACCCCAAGGGGCGGCTGCTGCG < 41bp 1 0.611174380603881 1 0.711009442806244 experiment 0.777651238792238 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561797 chr19:14561788 synonymous SNV . 0 12 hm5C_associated_SNPs_37349 0 0 1 0 1 Ribosome 1 0.500230200226412 0.577981114387512 0.999539599547175 hm5C_site_36881 DeepMRMD:0.577981114387512;iRNA_m5C:0.999539599547175 36882 chr22 24717327 24717327 1 + C T STAD 24717339 + 24717319 24717359 41 AAAGATTACGTGAACGTACCCGATTAAACCAGAGCAAAAAA AAAGATTATGTGAACGTACCCGATTAAACCAGAGCAAAAAA < 41bp 1 0.0901592036699122 1 0.185070604085922 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SPECC1L ENSG00000100014;ENSG00000258555 CDS Human other chr22:24717339 chr22:24717327 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_37350 0 0 1 0 1 Cytosol 1 0.500231643921232 1 0.999536712157536 hm5C_site_36882 DeepMRMD:1;iRNA_m5C:0.999536712157536 36883 chr4 152024210 152024210 1 + T C STAD 152024223 + 152024203 152024243 41 AATGACTTGAAAGAAGTGGTCAATAAATTGTAAGTGTTTCT AATGACTCGAAAGAAGTGGTCAATAAATTGTAAGTGTTTCT < 41bp 1 0.317160273053573 1 0.109282195568085 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPS3A ENSG00000145425 CDS Human protein_coding chr4:152024223 chr4:152024210 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_37351 0 0 1 0 1 Cytosol 1 0.500231947016321 1 0.999536105967358 hm5C_site_36883 DeepMRMD:1;iRNA_m5C:0.999536105967358 36884 chr2 203157521 203157521 1 + C T STAD 203157511 + 203157491 203157531 41 TTATACTAGGTGATTGAAATCTCTGAATATCGAACCCAGCT TTATACTAGGTGATTGAAATCTCTGAATATTGAACCCAGCT < 41bp 1 0.440788470611257 1 0.495489686727524 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOP58 ENSG00000055044 CDS Human protein_coding chr2:203157511 chr2:203157521 stopgain 0.997 1 31 hm5C_associated_SNPs_37352 0 0 1 0 1 Nucleus 1 0.500231644495744 1 0.999536711008512 hm5C_site_36884 DeepMRMD:1;iRNA_m5C:0.999536711008512 36885 chr19 10940910 10940910 1 + C T STAD 10940900 + 10940880 10940920 41 GGCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCC GGCCCCCCCTGATTCCTGTTCCCGTGGGGGTAGCAGCCTCC < 41bp 1 0.349268349986462 1 0.207382440567017 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940900 chr19:10940910 nonsynonymous SNV 0.020 1 31 hm5C_associated_SNPs_37353 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36885 DeepMRMD:1;iRNA_m5C:0.999536712157815 36886 chr19 10940910 10940910 1 + C T STAD 10940901 + 10940881 10940921 41 GCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCCT GCCCCCCCTGATTCCTGTTCCCGTGGGGGTAGCAGCCTCCT < 41bp 1 0.260286398598183 1 0.273776769638062 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940901 chr19:10940910 nonsynonymous SNV 0.020 1 30 hm5C_associated_SNPs_37354 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36886 DeepMRMD:1;iRNA_m5C:0.999536712157815 36887 chr1 158063228 158063228 1 + G A STAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACCGGCGCCACAAAGGCAGTGAG < 41bp 1 0.624399635535757 1 0.66811591386795 experiment 0.751200728928487 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063228 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_37356 0 0 0 0 2 cytosol 1 0.500231643921092 0.6637681722641 0.999536712157815 hm5C_site_36887 DeepMRMD:0.6637681722641;iRNA_m5C:0.999536712157815 36888 chr3 52233281 52233281 1 + C T STAD 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCGCCGCTGTCCATTCTTATCCCGAGT < 41bp 1 0.163411850545844 1 0.238706797361374 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233281 synonymous SNV . 0 24 hm5C_associated_SNPs_37357 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_36888 DeepMRMD:1;iRNA_m5C:0.999536712157814 36889 chr2 27302084 27302084 1 + C T STAD 27302064 + 27302044 27302084 41 GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCC GGCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCT < 41bp 1 0.281711220743662 1 0.605294644832611 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302064 chr2:27302084 nonsynonymous SNV 0.474 4 41 hm5C_associated_SNPs_37358 0 0 1 0 1 Cytosol 1 0.500231643921092 0.789410710334778 0.999536712157815 hm5C_site_36889 DeepMRMD:0.789410710334778;iRNA_m5C:0.999536712157815 36890 chr2 27302084 27302084 1 + C T STAD 27302065 + 27302045 27302085 41 GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCG GCCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCTG < 41bp 1 0.661206594124799 1 0.753865957260132 experiment 0.677586811750402 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302065 chr2:27302084 nonsynonymous SNV 0.474 4 40 hm5C_associated_SNPs_37359 0 0 1 0 1 Cytosol 1 0.500231643921093 0.492268085479736 0.999536712157815 hm5C_site_36890 DeepMRMD:0.492268085479736;iRNA_m5C:0.999536712157815 36891 chr2 27302084 27302084 1 + C T STAD 27302066 + 27302046 27302086 41 CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGG CCCTCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCTGG < 41bp 1 0.606278341919771 1 0.84714686870575 experiment 0.787443316160459 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302066 chr2:27302084 nonsynonymous SNV 0.474 4 39 hm5C_associated_SNPs_37360 0 0 1 0 1 Cytosol 1 0.500231643921092 0.3057062625885 0.999536712157815 hm5C_site_36891 DeepMRMD:0.3057062625885;iRNA_m5C:0.999536712157815 36892 chr19 49619616 49619616 1 + G T STAD 49619603 + 49619583 49619623 41 AAGACGGATGAGGGCCTAGGCTTCAACATCATGGGTGGCAA AAGACGGATGAGGGCCTAGGCTTCAACATCATGTGTGGCAA < 41bp 1 0.673602381040258 1 0.552354574203491 experiment 0.652795237919484 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LIN7B ENSG00000104863 CDS Human protein_coding chr19:49619603 chr19:49619616 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_37361 0 0 0 0 1 nucleoplasm 1 0.500231685042354 0.895290851593018 0.999536629915293 hm5C_site_36892 DeepMRMD:0.895290851593018;iRNA_m5C:0.999536629915293 36893 chr16 4902935 4902935 1 + G T STAD 4902930 + 4902910 4902950 41 TTGGTAGCCATGTCGGAGCCCCACAGGGTCCAGTTCACCTC TTGGTAGCCATGTCGGAGCCCCACATGGTCCAGTTCACCTC < 41bp 1 0.333229796373156 1 0.180012047290802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN1 ENSG00000118900 CDS Human protein_coding chr16:4902930 chr16:4902935 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_37362 0 0 1 0 1 Ribosome 1 0.500231643921107 1 0.999536712157787 hm5C_site_36893 DeepMRMD:1;iRNA_m5C:0.999536712157787 36894 chr3 37090086 37090086 1 + C T STAD 37090068 + 37090048 37090088 41 ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTCGA ATGTGCCCCCTTTGGAGGGACTGCCTATCTTCATTCTTTGA < 41bp 1 0.340295655963334 1 0.050257533788681 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MLH1 ENSG00000076242 CDS Human protein_coding chr3:37090068 chr3:37090086 stopgain 0.997 1 39 hm5C_associated_SNPs_37363 3 0 1 0 2 Cytosol 1 0.500231650372662 1 0.999536699254676 hm5C_site_36894 DeepMRMD:1;iRNA_m5C:0.999536699254676 Lynch syndrome Lynch syndrome 36895 chr19 47111800 47111800 1 + A C STAD 47111782 + 47111762 47111802 41 GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACAGA GAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACACCGA < 41bp 1 0.630237589740977 1 0.79326319694519 experiment 0.739524820518045 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111782 chr19:47111800 synonymous SNV . 0 39 hm5C_associated_SNPs_37364 0 0 1 0 2 Ribosome 1 0.500231643924702 0.41347360610962 0.999536712150595 hm5C_site_36895 DeepMRMD:0.41347360610962;iRNA_m5C:0.999536712150595 36896 chr19 47111800 47111800 1 + A C STAD 47111797 + 47111777 47111817 41 ATGGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGAT ATGGCCAGAAAGATGAAGGACACCGACAGTGAGGAGGAGAT < 41bp 1 0.380175929828127 1 0.0627744793891907 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111797 chr19:47111800 synonymous SNV . 0 24 hm5C_associated_SNPs_37365 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36896 DeepMRMD:1;iRNA_m5C:0.999536712157815 36897 chr19 47111800 47111800 1 + A C STAD 47111799 + 47111779 47111819 41 GGCCAGAAAGATGAAGGACACAGACAGTGAGGAGGAGATCC GGCCAGAAAGATGAAGGACACCGACAGTGAGGAGGAGATCC < 41bp 1 0.164655859868211 1 0.204160898923874 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111799 chr19:47111800 synonymous SNV . 0 22 hm5C_associated_SNPs_37366 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36897 DeepMRMD:1;iRNA_m5C:0.999536712157815 36898 chr19 47111800 47111800 1 + A C STAD 47111803 + 47111783 47111823 41 AGAAAGATGAAGGACACAGACAGTGAGGAGGAGATCCGAGA AGAAAGATGAAGGACACCGACAGTGAGGAGGAGATCCGAGA < 41bp 1 0.453748359453662 1 0.422207713127136 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111803 chr19:47111800 synonymous SNV . 0 18 hm5C_associated_SNPs_37367 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36898 DeepMRMD:1;iRNA_m5C:0.999536712157815 36899 chr21 48068520 48068520 1 + C T STAD 48068501 + 48068481 48068521 41 GGGACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCG GGGACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGTG < 41bp 1 0.509886891538154 1 0.108373701572418 experiment 0.980226216923693 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068501 chr21:48068520 nonsynonymous SNV 0.002 3 40 hm5C_associated_SNPs_37368 0 0 1 0 1 Cytosol 1 0.500231653566678 1 0.999536692866645 hm5C_site_36899 DeepMRMD:1;iRNA_m5C:0.999536692866645 36900 chr21 48068520 48068520 1 + C T STAD 48068504 + 48068484 48068524 41 ACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCGGCC ACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGTGGCC < 41bp 1 0.689090095546424 1 0.673458874225616 experiment 0.621819808907152 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068504 chr21:48068520 nonsynonymous SNV 0.002 3 37 hm5C_associated_SNPs_37369 0 0 1 0 1 Cytosol 1 0.500231643921199 0.653082251548768 0.999536712157601 hm5C_site_36900 DeepMRMD:0.653082251548768;iRNA_m5C:0.999536712157601 36901 chr9 35736412 35736412 1 + C A STAD 35736415 + 35736395 35736435 41 CCCGCCAGCTTCGTGCCCTCCCCAGTGAGGACCCTTACCAG CCCGCCAGCTTCGTGCCATCCCCAGTGAGGACCCTTACCAG < 41bp 1 0.645440720270762 1 0.27953714132309 experiment 0.709118559458475 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35736415 chr9:35736412 nonsynonymous SNV 0.920 2 18 hm5C_associated_SNPs_37370 0 0 0 0 0 Endoplasmic reticulum 1 0.500231812919469 1 0.999536374161063 hm5C_site_36901 DeepMRMD:1;iRNA_m5C:0.999536374161063 36902 chr19 36218396 36218396 1 + C A STAD 36218408 + 36218388 36218428 41 CTGCGGACCGTGTGCTGGGGCAGCGCAGCCCCGCTGGCGAG CTGCGGACAGTGTGCTGGGGCAGCGCAGCCCCGCTGGCGAG < 41bp 1 0.567012629172501 1 0.308539509773254 experiment 0.865974741654998 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218408 chr19:36218396 nonsynonymous SNV 0.368 5 9 hm5C_associated_SNPs_37373 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36902 DeepMRMD:1;iRNA_m5C:0.999536712157815 36903 chr17 29855737 29855737 1 + G A STAD 29855723 + 29855703 29855743 41 AGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGGCGAGTTCA AGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGGCAAGTTCA < 41bp 1 0.105862876084549 1 0.179492354393005 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29855723 chr17:29855737 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_37374 0 0 1 0 2 Ribosome 1 0.500231643933981 1 0.999536712132039 hm5C_site_36903 DeepMRMD:1;iRNA_m5C:0.999536712132039 36904 chr11 63719965 63719965 1 + A G STAD 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCATCGCGTGGGGAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.614360584619561 1 0.446462750434875 experiment 0.771278830760878 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719965 nonsynonymous SNV 0.988 1 17 hm5C_associated_SNPs_37375 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36904 DeepMRMD:1;iRNA_m5C:0.999536712157815 36905 chr12 111884621 111884621 1 + T C STAD 111884617 + 111884597 111884637 41 AGGAGGTCCGGTGGTGCACACGGCTTGAGATGCCTGACAAC AGGAGGTCCGGTGGTGCACACGGCCTGAGATGCCTGACAAC < 41bp 1 0.498670023887136 1 0.550092279911041 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111884617 chr12:111884621 nonsynonymous SNV 0.937 4 25 hm5C_associated_SNPs_37376 0 0 1 0 1 Ribosome 1 0.500231628342648 0.899815440177918 0.999536743314704 hm5C_site_36905 DeepMRMD:0.899815440177918;iRNA_m5C:0.999536743314704 36906 chr2 113950928 113950928 1 + G A STAD 113950934 + 113950914 113950954 41 CACCATTGCAATCCGGGGATCTTCCCCTCAGTAGGTAGGGA CACCATTGCAATCCAGGGATCTTCCCCTCAGTAGGTAGGGA < 41bp 1 0.0428029463203224 1 0.0771482586860657 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950934 chr2:113950928 synonymous SNV . 0 15 hm5C_associated_SNPs_37377 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36906 DeepMRMD:1;iRNA_m5C:0.999536712157815 36907 chr17 43220904 43220904 1 + G A STAD 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TCGTCGTCCAGTAGCTCTTCCGAATGTTTCGGACCCAAAAG < 41bp 1 0.318591038215172 1 0.78833794593811 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220904 stopgain 1.000 3 13 hm5C_associated_SNPs_37378 0 0 1 0 1 Cytosol 1 0.500231644603156 0.42332410812378 0.999536710793688 hm5C_site_36907 DeepMRMD:0.42332410812378;iRNA_m5C:0.999536710793688 36908 chr6 33638163 33638163 1 + A C STAD 33638147 + 33638127 33638167 41 ATGTGCTTGGACCGCCAGTACTTGGCCATCGACGAGATCTC ATGTGCTTGGACCGCCAGTACTTGGCCATCGACGAGCTCTC < 41bp 1 0.345133202587872 1 0.299628853797913 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33638147 chr6:33638163 nonsynonymous SNV 0.993 2 37 hm5C_associated_SNPs_37379 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36908 DeepMRMD:1;iRNA_m5C:0.999536712157815 36909 chr20 32665017 32665017 1 + A G STAD 32665000 + 32664980 32665020 41 CCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGGA CCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGGGGA < 41bp 1 0.353893884544535 1 0.598012983798981 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665000 chr20:32665017 nonsynonymous SNV 0.984 3 38 hm5C_associated_SNPs_37381 0 0 1 0 1 Cytosol 1 0.500231533685482 0.803974032402038 0.999536932629037 hm5C_site_36909 DeepMRMD:0.803974032402038;iRNA_m5C:0.999536932629037 36910 chr20 32665017 32665017 1 + A G STAD 32665025 + 32665005 32665045 41 ACGACGGCGATGAGGAAGGGCTCCTGACACACAGCGAGGAA ACGACGGCGATGGGGAAGGGCTCCTGACACACAGCGAGGAA < 41bp 1 0.623330386815337 1 0.223606914281845 experiment 0.753339226369325 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665025 chr20:32665017 nonsynonymous SNV 0.984 3 13 hm5C_associated_SNPs_37382 0 0 1 0 1 Cytosol 1 0.500231643921531 1 0.999536712156937 hm5C_site_36910 DeepMRMD:1;iRNA_m5C:0.999536712156937 36911 chr20 32665017 32665017 1 + A G STAD 32665027 + 32665007 32665047 41 GACGGCGATGAGGAAGGGCTCCTGACACACAGCGAGGAAGA GACGGCGATGGGGAAGGGCTCCTGACACACAGCGAGGAAGA < 41bp 1 0.556987401975307 1 0.139359831809998 experiment 0.886025196049387 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665027 chr20:32665017 nonsynonymous SNV 0.984 3 11 hm5C_associated_SNPs_37383 0 0 1 0 1 Cytosol 1 0.500231644057789 1 0.999536711884422 hm5C_site_36911 DeepMRMD:1;iRNA_m5C:0.999536711884422 36912 chr20 57484813 57484813 1 + C T STAD 57484828 + 57484808 57484848 41 CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC CCAACTGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC < 41bp 1 0.393208834448158 1 0.16646683216095 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNAS ENSG00000087460 CDS Human protein_coding chr20:57484828 chr20:57484813 nonsynonymous SNV 1.000 5 6 hm5C_associated_SNPs_37385 0 0 1 0 2 Cytosol 1 0.50022507841185 1 0.999549843176299 hm5C_site_36912 DeepMRMD:1;iRNA_m5C:0.999549843176299 36913 chr5 71491945 71491945 1 + C T STAD 71491948 + 71491928 71491968 41 GAGAAGCAGGGAGTAGACGACATTGAAAAATTTGAAGATGA GAGAAGCAGGGAGTAGATGACATTGAAAAATTTGAAGATGA < 41bp 1 0.135192459169942 1 0.102862685918808 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71491948 chr5:71491945 synonymous SNV . 0 18 hm5C_associated_SNPs_37386 0 0 1 0 0 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_36913 DeepMRMD:1;iRNA_m5C:0.999536712157818 36914 chr17 77043889 77043889 1 + G A STAD 77043900 + 77043880 77043920 41 TACTGCTACGTGCCCGGCCTCTACTTCTTCAGCCTCAACGT TACTGCTACATGCCCGGCCTCTACTTCTTCAGCCTCAACGT < 41bp 1 0.253007134712908 1 0.032652735710144 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77043900 chr17:77043889 nonsynonymous SNV 0.993 3 10 hm5C_associated_SNPs_37387 0 0 0 0 0 exosome 1 0.500229550003268 1 0.999540899993463 hm5C_site_36914 DeepMRMD:1;iRNA_m5C:0.999540899993463 36915 chr7 100484525 100484525 1 + A G STAD 100484519 + 100484499 100484539 41 GGGGAGCAGCGGGGGCGCTCCTCCTGAGGAGCCTCCTAAGG GGGGAGCAGCGGGGGCGCTCCTCCTGGGGAGCCTCCTAAGG < 41bp 1 0.689666542575244 1 0.842313766479492 experiment 0.620666914849511 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100484519 chr7:100484525 nonsynonymous SNV 0.938 2 27 hm5C_associated_SNPs_37388 0 0 1 0 1 Nucleus 1 0.500231643921092 0.315372467041016 0.999536712157815 hm5C_site_36915 DeepMRMD:0.315372467041016;iRNA_m5C:0.999536712157815 36916 chr17 79412070 79412070 1 + C T STAD 79412071 + 79412051 79412091 41 GGACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGG GGACCAGGCGTCACTGTGGTCCCCCATGTACGGGGGCCGGG < 41bp 1 0.0802558995137199 1 0.127069771289825 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412071 chr17:79412070 nonsynonymous SNV 0.997 0 20 hm5C_associated_SNPs_37389 0 0 0 0 1 chromatin 1 0.500231711785386 1 0.999536576429229 hm5C_site_36916 DeepMRMD:1;iRNA_m5C:0.999536576429229 36917 chr17 79412070 79412070 1 + C T STAD 79412072 + 79412052 79412092 41 GACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGGG GACCAGGCGTCACTGTGGTCCCCCATGTACGGGGGCCGGGG < 41bp 1 0.19429555765652 1 0.416569352149963 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412072 chr17:79412070 nonsynonymous SNV 0.997 0 19 hm5C_associated_SNPs_37390 0 0 0 0 1 chromatin 1 0.500231643921801 1 0.999536712156398 hm5C_site_36917 DeepMRMD:1;iRNA_m5C:0.999536712156398 36918 chr17 79412070 79412070 1 + C T STAD 79412073 + 79412053 79412093 41 ACCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGGGC ACCAGGCGTCACTGTGGTCCCCCATGTACGGGGGCCGGGGC < 41bp 1 0.149286776922816 1 0.33502858877182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412073 chr17:79412070 nonsynonymous SNV 0.997 0 18 hm5C_associated_SNPs_37391 0 0 0 0 1 chromatin 1 0.500256340903024 1 0.999487318193953 hm5C_site_36918 DeepMRMD:1;iRNA_m5C:0.999487318193953 36919 chr17 79412070 79412070 1 + C T STAD 79412074 + 79412054 79412094 41 CCAGGCGTCACTGTGGCCCCCCATGTACGGGGGCCGGGGCC CCAGGCGTCACTGTGGTCCCCCATGTACGGGGGCCGGGGCC < 41bp 1 0.0721658276231451 1 0.100743770599365 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412074 chr17:79412070 nonsynonymous SNV 0.997 0 17 hm5C_associated_SNPs_37392 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36919 DeepMRMD:1;iRNA_m5C:0.999536712157815 36920 chr17 79412070 79412070 1 + C T STAD 79412087 + 79412067 79412107 41 TGGCCCCCCATGTACGGGGGCCGGGGCCCCGCCTCTCACAT TGGTCCCCCATGTACGGGGGCCGGGGCCCCGCCTCTCACAT < 41bp 1 0.173607997317301 1 0.558542430400848 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412087 chr17:79412070 nonsynonymous SNV 0.997 0 4 hm5C_associated_SNPs_37393 0 0 0 0 1 chromatin 1 0.500231643921092 0.882915139198304 0.999536712157815 hm5C_site_36920 DeepMRMD:0.882915139198304;iRNA_m5C:0.999536712157815 36921 chr17 79412070 79412070 1 + C T STAD 79412088 + 79412068 79412108 41 GGCCCCCCATGTACGGGGGCCGGGGCCCCGCCTCTCACATG GGTCCCCCATGTACGGGGGCCGGGGCCCCGCCTCTCACATG < 41bp 1 0.408418888223341 1 0.455193042755127 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79412088 chr17:79412070 nonsynonymous SNV 0.997 0 3 hm5C_associated_SNPs_37394 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36921 DeepMRMD:1;iRNA_m5C:0.999536712157815 36922 chr8 28608180 28608180 1 + T G STAD 28608178 + 28608158 28608198 41 TCTCTCCCGTTTCCAGGTGACCTCACGGTGGACATTCCGAT TCTCTCCCGTTTCCAGGTGACCGCACGGTGGACATTCCGAT < 41bp 1 0.265040811767319 1 0.0761627852916718 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28608178 chr8:28608180 nonsynonymous SNV 0.349 4 23 hm5C_associated_SNPs_37395 0 0 1 0 1 Endoplasmic reticulum 1 0.500231640753863 1 0.999536718492275 hm5C_site_36922 DeepMRMD:1;iRNA_m5C:0.999536718492275 36923 chr8 21844781 21844781 1 + C A STAD 21844767 + 21844747 21844787 41 GTAAGATCTACATTGGGGACCAAGTGCAGAAATCCTCTAAG GTAAGATCTACATTGGGGACCAAGTGCAGAAATCATCTAAG < 41bp 1 0.290542547068931 1 0.438777536153793 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21844767 chr8:21844781 synonymous SNV . 0 35 hm5C_associated_SNPs_37396 0 0 1 0 1 Cytosol 1 0.5002316438549 1 0.9995367122902 hm5C_site_36923 DeepMRMD:1;iRNA_m5C:0.9995367122902 36924 chr5 102360935 102360935 1 + G A STAD 102360927 + 102360907 102360947 41 AACAGAAACTGATCAAAGAGCCAGGCTCGGGAGTGCCTGTT AACAGAAACTGATCAAAGAGCCAGGCTCAGGAGTGCCTGTT < 41bp 1 0.335258099996855 1 0.818360447883606 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102360927 chr5:102360935 synonymous SNV . 0 29 hm5C_associated_SNPs_37398 0 0 0 0 1 Ribosome 1 0.500231475975353 0.363279104232788 0.999537048049295 hm5C_site_36924 DeepMRMD:0.363279104232788;iRNA_m5C:0.999537048049295 36925 chr7 2472441 2472441 1 + G T STAD 2472435 + 2472415 2472455 41 GCCGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCA GCCGCTGCCCACGCCCGGGCCGGACATGGACAGGGAGCTCA < 41bp 1 0.465099710912816 1 0.140455812215805 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472435 chr7:2472441 nonsynonymous SNV 0.000 0 27 hm5C_associated_SNPs_37399 0 0 1 0 0 nucleolus 1 0.500231643921078 1 0.999536712157844 hm5C_site_36925 DeepMRMD:1;iRNA_m5C:0.999536712157844 36926 chr6 32945677 32945677 1 + T C STAD 32945671 + 32945651 32945691 41 GAGGAAAGTAGCAGTGAGAGCTCCTCTGAGGAAGAGGAGGA GAGGAAAGTAGCAGTGAGAGCTCCTCCGAGGAAGAGGAGGA < 41bp 1 0.403169973618711 1 0.528647780418396 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32945671 chr6:32945677 synonymous SNV . 0 27 hm5C_associated_SNPs_37400 0 0 1 0 0 Cytosol 1 0.500231643921092 0.942704439163208 0.999536712157815 hm5C_site_36926 DeepMRMD:0.942704439163208;iRNA_m5C:0.999536712157815 36927 chr20 57246312 57246312 1 + A G STAD 57246308 + 57246288 57246328 41 ATTGTACAGTCCATTTCTGACCTGAATGAAATATTCAGGGA ATTGTACAGTCCATTTCTGACCTGGATGAAATATTCAGGGA < 41bp 1 0.324527725220981 1 0.28726065158844 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control STX16 ENSG00000124222;ENSG00000254995 CDS Human other chr20:57246308 chr20:57246312 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_37402 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645619956 1 0.999536708760089 hm5C_site_36927 DeepMRMD:1;iRNA_m5C:0.999536708760089 36928 chr14 21549985 21549985 1 + G A STAD 21549971 + 21549951 21549991 41 GTGGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGC GTGGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCACCCAGC < 41bp 1 0.449793683157832 1 0.346199810504913 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549971 chr14:21549985 synonymous SNV . 0 35 hm5C_associated_SNPs_37403 0 0 0 0 0 Cytosol 1 0.500231640452069 1 0.999536719095861 hm5C_site_36928 DeepMRMD:1;iRNA_m5C:0.999536719095861 36929 chr14 21549985 21549985 1 + G A STAD 21549972 + 21549952 21549992 41 TGGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGCC TGGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCACCCAGCC < 41bp 1 0.331690333501177 1 0.385666698217392 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549972 chr14:21549985 synonymous SNV . 0 34 hm5C_associated_SNPs_37404 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_36929 DeepMRMD:1;iRNA_m5C:0.999536712157815 36930 chr14 21549985 21549985 1 + G A STAD 21549973 + 21549953 21549993 41 GGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGCCT GGAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCACCCAGCCT < 41bp 1 0.659162695467339 1 0.385612428188324 experiment 0.681674609065323 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549973 chr14:21549985 synonymous SNV . 0 33 hm5C_associated_SNPs_37405 0 0 0 0 0 Cytosol 1 0.500231643914405 1 0.99953671217119 hm5C_site_36930 DeepMRMD:1;iRNA_m5C:0.99953671217119 36931 chr14 21549985 21549985 1 + G A STAD 21549974 + 21549954 21549994 41 GAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCGCCCAGCCTC GAGGGGCCCAGTGGGGGCCCCGCAGCCCCTCACCCAGCCTC < 41bp 1 0.654112663299239 1 0.663278639316559 experiment 0.691774673401523 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21549974 chr14:21549985 synonymous SNV . 0 32 hm5C_associated_SNPs_37406 0 0 0 0 0 Cytosol 1 0.500231643921093 0.673442721366882 0.999536712157814 hm5C_site_36931 DeepMRMD:0.673442721366882;iRNA_m5C:0.999536712157814 36932 chr9 139887678 139887678 1 + T C STAD 139887676 + 139887656 139887696 41 CTGGCAAAACGCGTGTGGAGCCTGGAGCGGCGACTGGCAGG CTGGCAAAACGCGTGTGGAGCCCGGAGCGGCGACTGGCAGG < 41bp 1 0.604150093459396 1 0.147839337587357 experiment 0.791699813081209 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887676 chr9:139887678 nonsynonymous SNV 0.010 4 23 hm5C_associated_SNPs_37407 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36932 DeepMRMD:1;iRNA_m5C:0.999536712157815 36933 chr9 139887678 139887678 1 + T C STAD 139887689 + 139887669 139887709 41 TGTGGAGCCTGGAGCGGCGACTGGCAGGTAGGATTGGGGGT TGTGGAGCCCGGAGCGGCGACTGGCAGGTAGGATTGGGGGT < 41bp 1 0.551348868069741 1 0.3314448595047 experiment 0.897302263860519 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887689 chr9:139887678 nonsynonymous SNV 0.010 4 10 hm5C_associated_SNPs_37408 0 0 1 0 1 Ribosome 1 0.500231643921547 1 0.999536712156905 hm5C_site_36933 DeepMRMD:1;iRNA_m5C:0.999536712156905 36934 chrX 12837691 12837691 1 + C T STAD 12837674 + 12837654 12837694 41 GTGGAATTTGCTTTGATCCACAAAGAGAGGAAGAAGGCGAA GTGGAATTTGCTTTGATCCACAAAGAGAGGAAGAAGGTGAA < 41bp 1 0.437481502542959 1 0.513524115085602 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12837674 chrX:12837691 nonsynonymous SNV 0.998 5 38 hm5C_associated_SNPs_37409 0 0 1 0 0 Ribosome 1 0.500231643921084 0.972951769828796 0.999536712157832 hm5C_site_36934 DeepMRMD:0.972951769828796;iRNA_m5C:0.999536712157832 36935 chr11 86947719 86947719 1 + T G STAD 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTGCATCACAGCTGCCATGTACATGTTCGTTTTCAG < 41bp 1 0.0482409749267714 1 0.0361525118350983 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947719 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_37410 0 0 1 0 2 Ribosome 1 0.500719342216468 1 0.998561315567064 hm5C_site_36935 DeepMRMD:1;iRNA_m5C:0.998561315567064 36936 chr1 201751603 201751603 1 + G A STAD 201751618 + 201751598 201751638 41 ACAGTGCAGAGCCAGGATTCCTGGCTCCTGGAGCCCGTTCT ACAGTACAGAGCCAGGATTCCTGGCTCCTGGAGCCCGTTCT < 41bp 1 0.29891856638997 1 0.155927002429962 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NAV1 ENSG00000134369 CDS Human protein_coding chr1:201751618 chr1:201751603 nonsynonymous SNV 0.884 0 6 hm5C_associated_SNPs_37411 0 0 0 0 0 Nucleus 1 0.50025013467618 1 0.99949973064764 hm5C_site_36936 DeepMRMD:1;iRNA_m5C:0.99949973064764 36937 chr7 142460323 142460323 1 + C T STAD 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGTTGAG < 41bp 1 0.190803645518215 1 0.0865569412708282 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460323 synonymous SNV . 0 37 hm5C_associated_SNPs_37412 0 0 0 0 2 Cytosol 1 0.500231984019753 1 0.999536031960495 hm5C_site_36937 DeepMRMD:1;iRNA_m5C:0.999536031960495 36938 chr7 142460323 142460323 1 + C T STAD 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGTTGAGCCAGGCTA < 41bp 1 0.431394147314212 1 0.0903672873973846 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460323 synonymous SNV . 0 29 hm5C_associated_SNPs_37413 0 0 0 0 2 Cytosol 1 0.500231691967289 1 0.999536616065421 hm5C_site_36938 DeepMRMD:1;iRNA_m5C:0.999536616065421 36939 chr7 142460323 142460323 1 + C T STAD 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGTTGAGCCAGGCTAAG < 41bp 1 0.272710189520561 1 0.170773476362228 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460323 synonymous SNV . 0 27 hm5C_associated_SNPs_37414 0 0 0 0 2 Cytosol 1 0.500231652890526 1 0.999536694218948 hm5C_site_36939 DeepMRMD:1;iRNA_m5C:0.999536694218948 36940 chr7 142460323 142460323 1 + C T STAD 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGTTGAGCCAGGCTAAGT < 41bp 1 0.544550326721914 1 0.207855075597763 experiment 0.910899346556171 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460323 synonymous SNV . 0 26 hm5C_associated_SNPs_37415 0 0 0 0 2 Cytosol 1 0.500231645343324 1 0.999536709313352 hm5C_site_36940 DeepMRMD:1;iRNA_m5C:0.999536709313352 36941 chr7 142460323 142460323 1 + C T STAD 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGTTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.381296991707811 1 0.29138445854187 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460323 synonymous SNV . 0 16 hm5C_associated_SNPs_37416 0 0 0 0 2 Cytosol 1 0.500231643933205 1 0.999536712133591 hm5C_site_36941 DeepMRMD:1;iRNA_m5C:0.999536712133591 36942 chr7 142460323 142460323 1 + C T STAD 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGTTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.511904179150806 1 0.342397391796112 experiment 0.976191641698389 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460323 synonymous SNV . 0 15 hm5C_associated_SNPs_37417 0 0 0 0 2 Cytosol 1 0.500231567789913 1 0.999536864420173 hm5C_site_36942 DeepMRMD:1;iRNA_m5C:0.999536864420173 36943 chr7 142460323 142460323 1 + C T STAD 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGTTGAGCCAGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.39169745600719 1 0.11300265789032 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460323 synonymous SNV . 0 11 hm5C_associated_SNPs_37418 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_36943 DeepMRMD:1;iRNA_m5C:0.999536712157815 36944 chr5 131953957 131953957 1 + T G STAD 131953938 + 131953918 131953958 41 GATGATTGTTATGAGGACAACAGAACTTGTGAACAAGGATC GATGATTGTTATGAGGACAACAGAACTTGTGAACAAGGAGC < 41bp 1 0.464402822607742 1 0.493989050388336 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131953938 chr5:131953957 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_37419 0 0 1 0 1 Cytosol 1 0.500231643928832 1 0.999536712142336 hm5C_site_36944 DeepMRMD:1;iRNA_m5C:0.999536712142336 36945 chr19 50333092 50333092 1 + G A STAD 50333110 + 50333090 50333130 41 TCGGCTTCTGTTTGAGAAGGCAGCCCCCCCGGCCTTGCTGG TCAGCTTCTGTTTGAGAAGGCAGCCCCCCCGGCCTTGCTGG < 41bp 1 0.198302282452898 1 0.317946553230286 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50333110 chr19:50333092 nonsynonymous SNV 0.966 2 3 hm5C_associated_SNPs_37420 0 0 1 0 0 chromatin 1 0.500231643921082 1 0.999536712157836 hm5C_site_36945 DeepMRMD:1;iRNA_m5C:0.999536712157836 36946 chr19 58369951 58369951 1 + G A STAD 58369959 + 58369939 58369979 41 TTCAGGTTGTTGGTGTGGATCAAAAGATGAGGAGGCACCTT TTCAGGTTGTTGATGTGGATCAAAAGATGAGGAGGCACCTT < 41bp 1 0.601740190733595 1 0.568367540836334 experiment 0.796519618532809 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF587 ENSG00000198466;ENSG00000268750 CDS Human other chr19:58369959 chr19:58369951 stopgain 0.039 0 13 hm5C_associated_SNPs_37421 0 0 0 0 1 Nucleus 1 0.500231644495426 0.863264918327332 0.999536711009148 hm5C_site_36946 DeepMRMD:0.863264918327332;iRNA_m5C:0.999536711009148 36947 chr11 73638354 73638354 1 + T C STAD 73638335 + 73638315 73638355 41 ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCTA ATTCTTGTGTTTTAGGTAGCCACATGGGAGAAGCAGATCCA < 41bp 1 0.598338519843431 1 0.856364548206329 experiment 0.803322960313137 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73638335 chr11:73638354 nonsynonymous SNV 0.972 4 40 hm5C_associated_SNPs_37422 0 0 1 0 1 Ribosome 1 0.500231644980005 0.287270903587342 0.999536710039989 hm5C_site_36947 DeepMRMD:0.287270903587342;iRNA_m5C:0.999536710039989 36948 chr16 3707235 3707235 1 + A G STAD 3707253 + 3707233 3707273 41 AGACCCTCCCAGTGGTCATCCATCCGCCTGTGGACAAGCCC AGGCCCTCCCAGTGGTCATCCATCCGCCTGTGGACAAGCCC < 41bp 1 0.150374189378848 1 0.070111095905304 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707253 chr16:3707235 synonymous SNV . 0 3 hm5C_associated_SNPs_37423 0 0 1 0 1 Cytosol 1 0.500231643921087 1 0.999536712157827 hm5C_site_36948 DeepMRMD:1;iRNA_m5C:0.999536712157827 36949 chr19 14040219 14040219 1 + T C STAD 14040234 + 14040214 14040254 41 CTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA CTCAGCGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAA < 41bp 1 0.373724959478981 1 0.499682188034058 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040234 chr19:14040219 synonymous SNV . 0 6 hm5C_associated_SNPs_37424 0 0 0 0 2 chromatin 1 0.500231374265328 1 0.999537251469343 hm5C_site_36949 DeepMRMD:1;iRNA_m5C:0.999537251469343 36950 chr12 113730874 113730874 1 + A G STAD 113730854 + 113730834 113730874 41 GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATA GTCACCAGGCTGCTGGAGACCCTCTCCCAGATGGAGAGATG < 41bp 1 0.0933643465006324 1 0.0411652624607086 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113730854 chr12:113730874 nonsynonymous SNV 0.676 0 41 hm5C_associated_SNPs_37425 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36950 DeepMRMD:1;iRNA_m5C:0.999536712157815 36951 chr12 51034587 51034587 1 + T C STAD 51034590 + 51034570 51034610 41 CTTCTGCTCCCTCTAAGTACCACCGAACTCGATCTGGGGGA CTTCTGCTCCCTCTAAGCACCACCGAACTCGATCTGGGGGA < 41bp 1 0.547310720904926 1 0.609231293201447 experiment 0.905378558190149 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51034590 chr12:51034587 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_37427 0 0 1 0 1 Nucleus 1 0.500273016457216 0.781537413597106 0.999453967085569 hm5C_site_36951 DeepMRMD:0.781537413597106;iRNA_m5C:0.999453967085569 36952 chr6 31594921 31594921 1 + A G STAD 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTGCCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.304513350024619 1 0.114459246397018 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594921 synonymous SNV . 0 3 hm5C_associated_SNPs_37429 0 0 1 0 1 Ribosome 1 0.50023164392111 1 0.99953671215778 hm5C_site_36952 DeepMRMD:1;iRNA_m5C:0.99953671215778 36953 chr6 31594921 31594921 1 + A G STAD 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TGCCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.290950314155276 1 0.107025772333145 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594921 synonymous SNV . 0 2 hm5C_associated_SNPs_37430 0 0 1 0 1 Ribosome 1 0.500231643921076 1 0.999536712157848 hm5C_site_36953 DeepMRMD:1;iRNA_m5C:0.999536712157848 36954 chr6 31594921 31594921 1 + A G STAD 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC GCCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.340082062171357 1 0.202972680330276 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594921 synonymous SNV . 0 1 hm5C_associated_SNPs_37431 0 0 1 0 1 Ribosome 1 0.500231643921157 1 0.999536712157686 hm5C_site_36954 DeepMRMD:1;iRNA_m5C:0.999536712157686 36955 chr19 50921195 50921195 1 + G T STAD 50921206 + 50921186 50921226 41 TGGACCTGAGGCCTGGTGACCTTGCAAGCATCCCATGGGGC TGGACCTGATGCCTGGTGACCTTGCAAGCATCCCATGGGGC < 41bp 1 0.214420253412441 1 0.0842567384243011 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50921206 chr19:50921195 nonsynonymous SNV 0.942 0 10 hm5C_associated_SNPs_37432 0 0 1 0 1 Nucleus 1 0.500233968477763 1 0.999532063044474 hm5C_site_36955 DeepMRMD:1;iRNA_m5C:0.999532063044474 36956 chr2 176988303 176988303 1 + A G STAD 176988301 + 176988281 176988321 41 ATTCGCAGCCGCAGCAGCAGCAACTTGACCCAAGTAAGTGC ATTCGCAGCCGCAGCAGCAGCAGCTTGACCCAAGTAAGTGC < 41bp 1 0.360375834580422 1 0.259967088699341 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176988301 chr2:176988303 synonymous SNV . 0 23 hm5C_associated_SNPs_37433 0 0 0 0 1 Endoplasmic reticulum 1 0.500231671016942 1 0.999536657966116 hm5C_site_36956 DeepMRMD:1;iRNA_m5C:0.999536657966116 36957 chr6 30887979 30887979 1 + G A STAD 30887972 + 30887952 30887992 41 GAGGATGGGACCATGACCTCCCTCTGCGGGGACTGGCTGCA GAGGATGGGACCATGACCTCCCTCTGCAGGGACTGGCTGCA < 41bp 1 0.111514821612648 1 0.172208249568939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30887972 chr6:30887979 nonsynonymous SNV 0.937 3 28 hm5C_associated_SNPs_37434 0 0 1 0 1 Ribosome 1 0.500231643946283 1 0.999536712107435 hm5C_site_36957 DeepMRMD:1;iRNA_m5C:0.999536712107435 36958 chr16 67662300 67662300 1 + A G STAD 67662319 + 67662299 67662339 41 CACCCACACCGGGGAGAAGCCTTACGCCTGCAGCCACTGCG CGCCCACACCGGGGAGAAGCCTTACGCCTGCAGCCACTGCG < 41bp 1 0.288686984679792 1 0.119003444910049 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CTCF ENSG00000102974 CDS Human protein_coding chr16:67662319 chr16:67662300 nonsynonymous SNV 0.806 2 2 hm5C_associated_SNPs_37435 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36958 DeepMRMD:1;iRNA_m5C:0.999536712157815 36959 chr10 104129985 104129985 1 + C T STAD 104129996 + 104129976 104130016 41 CTGGAGTCACTACAGGAGCTCATGAAGGTAAAGGATGAAGA CTGGAGTCATTACAGGAGCTCATGAAGGTAAAGGATGAAGA < 41bp 1 0.220938365478929 1 0.203283339738846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129996 chr10:104129985 synonymous SNV . 0 10 hm5C_associated_SNPs_37436 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_36959 DeepMRMD:1;iRNA_m5C:0.999536712157815 36960 chrX 73043716 73043716 1 + T A STAD 73043732 - 73043712 73043752 41 GGGGCTCGGAACTACATGCCCTAGGATATAAAAATGATGTT GGGGCTCGGAACTACATGCCCTAGGATATAAAAATGTTGTT < 41bp 1 0.329925641751773 1 0.309246361255646 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043732 chrX:73043716 . . 0 37 hm5C_associated_SNPs_37437 0 0 1 0 0 unknown 1 0.500231643921285 1 0.999536712157429 hm5C_site_36960 DeepMRMD:1;iRNA_m5C:0.999536712157429 36961 chr3 9775910 9775910 1 + G A STAD 9775905 + 9775885 9775925 41 TACGAGTGCCCGGTGGAGACCTGCCGAAAGGTCTACAAGAG TACGAGTGCCCGGTGGAGACCTGCCAAAAGGTCTACAAGAG < 41bp 1 0.331057860659206 1 0.365136384963989 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9775905 chr3:9775910 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_37438 0 0 1 0 1 Nucleus 1 0.500231643920122 1 0.999536712159756 hm5C_site_36961 DeepMRMD:1;iRNA_m5C:0.999536712159756 36962 chr2 27598544 27598544 1 + A G STAD 27598533 + 27598513 27598553 41 CCAGCAACTCCGAGAAGGCTCCTTCCGGGTCACCCGCATGC CCAGCAACTCCGAGAAGGCTCCTTCCGGGTCGCCCGCATGC < 41bp 1 0.0620438447175396 1 0.0322735607624054 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX17 ENSG00000115234 CDS Human protein_coding chr2:27598533 chr2:27598544 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_37439 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_36962 DeepMRMD:1;iRNA_m5C:0.999536712157815 36963 chr15 40260054 40260054 1 + A G STAD 40260052 + 40260032 40260072 41 TGACCATCCCTAGTGACTTACCAGCTGACTTTCAAGATTTT TGACCATCCCTAGTGACTTACCGGCTGACTTTCAAGATTTT < 41bp 1 0.108780778525303 1 0.154015809297562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40260052 chr15:40260054 synonymous SNV . 0 23 hm5C_associated_SNPs_37440 0 0 1 0 1 Ribosome 1 0.500230009741947 1 0.999539980516107 hm5C_site_36963 DeepMRMD:1;iRNA_m5C:0.999539980516107 36964 chr1 28862498 28862498 1 + C T STAD 28862499 + 28862479 28862519 41 TTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTC TTGCCATCTCCCATGAGGGTCACGTGTACGGCTTCGGCCTC < 41bp 1 0.662397910471603 1 0.0948189496994019 experiment 0.675204179056793 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862499 chr1:28862498 synonymous SNV . 0 20 hm5C_associated_SNPs_37441 0 0 1 0 1 Ribosome 1 0.500231644639332 1 0.999536710721337 hm5C_site_36964 DeepMRMD:1;iRNA_m5C:0.999536710721337 36965 chrX 99920261 99920261 1 + G A STAD 99920250 + 99920230 99920270 41 ATCTTGGCAGACATAGATCCCCCCAAGATCCGCTGTCCCCA ATCTTGGCAGACATAGATCCCCCCAAGATCCACTGTCCCCA < 41bp 1 0.645132612924134 1 0.124326169490814 experiment 0.709734774151731 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99920250 chrX:99920261 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_37443 0 0 0 0 1 nucleus 1 0.500231643921396 1 0.999536712157208 hm5C_site_36965 DeepMRMD:1;iRNA_m5C:0.999536712157208 36966 chr1 36645665 36645665 1 + A G STAD 36645659 + 36645639 36645679 41 AAGCTGTGGTGCAGTCCCCGCAGGTCACAGGTAGATCTCCT AAGCTGTGGTGCAGTCCCCGCAGGTCGCAGGTAGATCTCCT < 41bp 1 0.366648332120727 1 0.883714079856873 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36645659 chr1:36645665 nonsynonymous SNV 0.998 3 27 hm5C_associated_SNPs_37444 0 0 0 0 1 Ribosome 1 0.500231643742925 0.232571840286254 0.99953671251415 hm5C_site_36966 DeepMRMD:0.232571840286254;iRNA_m5C:0.99953671251415 Red blood cell count 36967 chr18 633332 633332 1 + A G STAD 633344 + 633324 633364 41 AAGATGTTACCTGGGCAGGACAGAGGACTGTGTGGGGAACT AAGATGTTGCCTGGGCAGGACAGAGGACTGTGTGGGGAACT < 41bp 1 0.543051930616005 1 0.426557183265686 experiment 0.913896138767989 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633344 chr18:633332 synonymous SNV . 0 9 hm5C_associated_SNPs_37445 0 0 0 0 1 cytosol 1 0.500231681711713 1 0.999536636576574 hm5C_site_36967 DeepMRMD:1;iRNA_m5C:0.999536636576574 36968 chr5 140516540 140516540 1 + C T STAD 140516546 + 140516526 140516566 41 TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTC TCCATCAACGCGGATAACGGCCACCTGTTTGCCCTCAGGTC < 41bp 1 0.12697046391513 1 0.0485000014305115 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140516546 chr5:140516540 synonymous SNV . 0 15 hm5C_associated_SNPs_37446 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_36968 DeepMRMD:1;iRNA_m5C:0.999536712157815 36969 chr16 23700987 23700987 1 + A G STAD 23700976 + 23700956 23700996 41 CTGCACCTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA CTGCACCTCAGCAACGGCAGCGTGCAGATCAGCTTCTTCCA < 41bp 1 0.210788665885026 1 0.256470918655396 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700976 chr16:23700987 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_37447 0 0 1 0 1 Ribosome 1 0.500231640958667 1 0.999536718082666 hm5C_site_36969 DeepMRMD:1;iRNA_m5C:0.999536718082666 36970 chr7 69064829 69064829 1 + T C STAD 69064849 + 69064829 69064869 41 TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG CCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG < 41bp 1 0.159670527286903 1 0.0449912846088409 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064849 chr7:69064829 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_37448 0 0 1 0 0 Nucleus 1 0.500231643862498 1 0.999536712275004 hm5C_site_36970 DeepMRMD:1;iRNA_m5C:0.999536712275004 36971 chr6 33411288 33411288 1 + G A STAD 33411295 + 33411275 33411315 41 TAGCAAGAGTGAGGACCTCTCTTCCGGGGTCCCCAAGCCCC TAGCAAGAGTGAGAACCTCTCTTCCGGGGTCCCCAAGCCCC < 41bp 1 0.154753130030873 1 0.182938873767853 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33411295 chr6:33411288 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_37449 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36971 DeepMRMD:1;iRNA_m5C:0.999536712157815 36972 chr1 1262961 1262961 1 + C T STAD 1262964 + 1262944 1262984 41 ACCACCCCTGGGTCGTGCGCCGCGCCGTCACCGTGGCCTTC ACCACCCCTGGGTCGTGTGCCGCGCCGTCACCGTGGCCTTC < 41bp 1 0.605434919012526 1 0.0724980235099792 experiment 0.789130161974947 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPTP ENSG00000224051 CDS Human protein_coding chr1:1262964 chr1:1262961 nonsynonymous SNV 0.043 3 18 hm5C_associated_SNPs_37450 0 0 1 0 0 Ribosome 1 0.500438642137861 1 0.999122715724278 hm5C_site_36972 DeepMRMD:1;iRNA_m5C:0.999122715724278 36973 chr19 50031729 50031729 1 + G A STAD 50031728 + 50031708 50031748 41 CTTTGCCACTCCCCAGGGACCGATGATGTGGCGACCATCAG CTTTGCCACTCCCCAGGGACCAATGATGTGGCGACCATCAG < 41bp 1 0.525847348881599 1 0.240654081106186 experiment 0.948305302236802 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RCN3 ENSG00000142552 UTR5 Human protein_coding chr19:50031728 chr19:50031729 . . 0 22 hm5C_associated_SNPs_37451 0 0 1 0 1 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_36973 DeepMRMD:1;iRNA_m5C:0.999536712157815 36974 chr1 183881241 183881241 1 + A G STAD 183881247 + 183881227 183881267 41 GGTCTGACATGATCACCAGTCCCACTCCCACCAAAGAGCAG GGTCTGACATGATCGCCAGTCCCACTCCCACCAAAGAGCAG < 41bp 1 0.12368456033817 1 0.0444952249526978 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RGL1 ENSG00000143344 CDS Human protein_coding chr1:183881247 chr1:183881241 nonsynonymous SNV 0.102 0 15 hm5C_associated_SNPs_37452 0 0 0 0 1 cytosol 1 0.500232141724336 1 0.999535716551328 hm5C_site_36974 DeepMRMD:1;iRNA_m5C:0.999535716551328 36975 chr1 12065963 12065963 1 + G A STAD 12065958 + 12065938 12065978 41 TTCCTGGGCCCCAAGAACAGCCGTCGGGCCTTGATGGGCTA TTCCTGGGCCCCAAGAACAGCCGTCAGGCCTTGATGGGCTA < 41bp 1 0.0613592579805994 1 0.451068192720413 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12065958 chr1:12065963 nonsynonymous SNV 0.998 1 26 hm5C_associated_SNPs_37453 0 0 1 0 0 Ribosome 1 0.500231643921084 1 0.999536712157833 hm5C_site_36975 DeepMRMD:1;iRNA_m5C:0.999536712157833 36976 chr15 41245679 41245679 1 + A T STAD 41245677 + 41245657 41245697 41 TGGGGGGCGCTCAGCTGGAGCTACCGAGCGGTGCCAGGCCA TGGGGGGCGCTCAGCTGGAGCTTCCGAGCGGTGCCAGGCCA < 41bp 1 0.22975864250833 1 0.232840001583099 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHAC1 ENSG00000128965 CDS Human protein_coding chr15:41245677 chr15:41245679 synonymous SNV . 0 23 hm5C_associated_SNPs_37454 0 0 0 0 0 nucleoplasm 1 0.500231643920237 1 0.999536712159526 hm5C_site_36976 DeepMRMD:1;iRNA_m5C:0.999536712159526 36977 chr12 57571256 57571256 1 + G A STAD 57571257 + 57571237 57571277 41 CAGCCTGCCCCGCATTGAGGCAGCCTCCATGAGTGGGGCTG CAGCCTGCCCCGCATTGAGACAGCCTCCATGAGTGGGGCTG < 41bp 1 0.134275028720724 1 0.243463426828384 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57571257 chr12:57571256 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_37455 0 0 1 0 1 Exosome 1 0.500231637917471 1 0.999536724165058 hm5C_site_36977 DeepMRMD:1;iRNA_m5C:0.999536724165058 36978 chr5 150867571 150867571 1 + T C STAD 150867554 + 150867534 150867574 41 CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCTGGA CTCCCTGCAGGCATCTTGGCCATCCTCATCCCCCGCCCGGA < 41bp 1 0.102350381559016 1 0.0207090377807617 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150867554 chr5:150867571 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_37458 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644486372 1 0.999536711027255 hm5C_site_36978 DeepMRMD:1;iRNA_m5C:0.999536711027255 36979 chr2 11053256 11053256 1 + T C STAD 11053264 + 11053244 11053284 41 GCTGGTTCACCCTGGAGTACCTGCTGCGCCTCTTCTCGTCA GCTGGTTCACCCCGGAGTACCTGCTGCGCCTCTTCTCGTCA < 41bp 1 0.585409127310464 1 0.286886096000671 experiment 0.829181745379072 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11053264 chr2:11053256 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_37459 0 0 0 0 0 exosome 1 0.500231644341907 1 0.999536711316185 hm5C_site_36979 DeepMRMD:1;iRNA_m5C:0.999536711316185 36980 chr13 49771028 49771028 1 + G A STAD 49771026 + 49771006 49771046 41 TTTCTAGTTTGGACCATTTTCAGAAAAATGTGATATTACTA TTTCTAGTTTGGACCATTTTCAAAAAAATGTGATATTACTA < 41bp 1 0.546018574949778 1 0.82906711101532 experiment 0.907962850100443 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49771026 chr13:49771028 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_37460 0 0 0 2 2 Cytosol 1 0.500231643944438 0.34186577796936 0.999536712111124 hm5C_site_36980 DeepMRMD:0.34186577796936;iRNA_m5C:0.999536712111124 36981 chr7 101837135 101837135 1 + A G STAD 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCGTGGAGTTTGCACCGTCCGAGGGCGCTGGGACA < 41bp 1 0.025483728228426 1 0.333978861570358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837135 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_37461 0 0 1 0 2 Exosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_36981 DeepMRMD:1;iRNA_m5C:0.999536712157806 36982 chr7 101837135 101837135 1 + A G STAD 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCGTGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC < 41bp 1 0.09379773346942 1 0.445286929607391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837135 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_37462 0 0 1 0 2 Exosome 1 0.500230564613712 1 0.999538870772575 hm5C_site_36982 DeepMRMD:1;iRNA_m5C:0.999538870772575 36983 chr11 14865502 14865502 1 + C T STAD 14865490 + 14865470 14865510 41 TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA TCCTGCATTAGAATTGATGGCTCTATACGTGGTAGCTGCCA < 41bp 1 0.440788151253017 1 0.875625967979431 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14865490 chr11:14865502 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_37463 0 0 1 0 1 chromatin 1 0.500231356258399 0.248748064041138 0.999537287483202 hm5C_site_36983 DeepMRMD:0.248748064041138;iRNA_m5C:0.999537287483202 36984 chr22 26422847 26422847 1 + C T STAD 26422843 + 26422823 26422863 41 GGCAGTGACGAGGGAAACCTCTCGCTGAGGGTTGGGGCAAA GGCAGTGACGAGGGAAACCTCTCGTTGAGGGTTGGGGCAAA < 41bp 1 0.599778555558182 1 0.851077675819397 experiment 0.800442888883637 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26422843 chr22:26422847 synonymous SNV . 0 25 hm5C_associated_SNPs_37464 0 0 0 0 0 chromatin 1 0.500231643921092 0.297844648361206 0.999536712157815 hm5C_site_36984 DeepMRMD:0.297844648361206;iRNA_m5C:0.999536712157815 36985 chr8 32613931 32613931 1 + A G STAD 32613925 + 32613905 32613945 41 CCTTTCTTATGTCCAGGAAACAGCGGAAAAAGCTGCATGAC CCTTTCTTATGTCCAGGAAACAGCGGGAAAAGCTGCATGAC < 41bp 1 0.566527788106023 1 0.826608419418335 experiment 0.866944423787954 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NRG1 ENSG00000157168 CDS Human protein_coding chr8:32613925 chr8:32613931 nonsynonymous SNV 0.980 2 27 hm5C_associated_SNPs_37465 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.34678316116333 0.999536712157815 hm5C_site_36985 DeepMRMD:0.34678316116333;iRNA_m5C:0.999536712157815 36986 chr1 117618443 117618443 1 + C T STAD 117618425 + 117618405 117618445 41 GTGTTTCCAAGAAGGTAGAACCCTCAGACCCAGTAGCCCGG GTGTTTCCAAGAAGGTAGAACCCTCAGACCCAGTAGCCTGG < 41bp 1 0.0793304050482115 1 0.0400985777378082 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117618425 chr1:117618443 nonsynonymous SNV 0.314 1 39 hm5C_associated_SNPs_37466 0 0 1 0 1 Nucleus 1 0.500231644049904 1 0.999536711900192 hm5C_site_36986 DeepMRMD:1;iRNA_m5C:0.999536711900192 36987 chr12 132400493 132400493 1 + G T STAD 132400500 + 132400480 132400520 41 TGCCGCCTGCACAGCGCCCCCAACCTGTCTGACTTGCACGT TGCCGCCTGCACATCGCCCCCAACCTGTCTGACTTGCACGT < 41bp 1 0.182282523969113 1 0.0981128215789795 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ULK1 ENSG00000177169 CDS Human protein_coding chr12:132400500 chr12:132400493 nonsynonymous SNV 0.987 2 14 hm5C_associated_SNPs_37467 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_36987 DeepMRMD:1;iRNA_m5C:0.999536712157815 36988 chr8 21859729 21859729 1 + G T STAD 21859735 + 21859715 21859755 41 ACACCCCTGAACCAGGAGAGCGACCGCTTTCTGCACATCAT ACACCCCTGAACCATGAGAGCGACCGCTTTCTGCACATCAT < 41bp 1 0.317826814556017 1 0.0937542915344238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859735 chr8:21859729 nonsynonymous SNV 0.995 1 15 hm5C_associated_SNPs_37469 0 0 1 0 1 Cytosol 1 0.500231654069495 1 0.99953669186101 hm5C_site_36988 DeepMRMD:1;iRNA_m5C:0.99953669186101 36989 chr6 26156700 26156700 1 + G T STAD 26156707 + 26156687 26156727 41 GGCCCGCAAGTCTGCAGGTGCGGCCAAGCGCAAAGCGTCTG GGCCCGCAAGTCTTCAGGTGCGGCCAAGCGCAAAGCGTCTG < 41bp 1 0.499967315127047 1 0.378855317831039 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26156707 chr6:26156700 nonsynonymous SNV 0.668 0 14 hm5C_associated_SNPs_37470 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_36989 DeepMRMD:1;iRNA_m5C:0.999536712157815 36990 chr19 1254309 1254309 1 + T C STAD 1254325 + 1254305 1254345 41 CCGCTGCTGCGCGGGGGGACCCCAGCATAGCCTCCCCCGTG CCGCCGCTGCGCGGGGGGACCCCAGCATAGCCTCCCCCGTG < 41bp 1 0.609961783417562 1 0.411217898130417 experiment 0.780076433164877 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MIDN ENSG00000167470 CDS Human protein_coding chr19:1254325 chr19:1254309 synonymous SNV . 0 5 hm5C_associated_SNPs_37471 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_36990 DeepMRMD:1;iRNA_m5C:0.999536712157815 36991 chr10 17277877 17277877 1 + T C STAD 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCCG < 41bp 1 0.0626253181497983 1 0.484212040901184 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277877 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_37472 0 0 1 0 2 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_36991 DeepMRMD:1;iRNA_m5C:0.999536712157808 36992 chr20 5932800 5932800 1 + C A STAD 5932807 + 5932787 5932827 41 AACCACAGGAAAACGTACTTCTGGTAGGTGAGGTCAATGAT AACCACAGGAAAAAGTACTTCTGGTAGGTGAGGTCAATGAT < 41bp 1 0.420200636680352 1 0.308088779449463 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5932807 chr20:5932800 nonsynonymous SNV 0.774 0 14 hm5C_associated_SNPs_37474 0 0 1 0 1 Ribosome 1 0.500231599372892 1 0.999536801254216 hm5C_site_36992 DeepMRMD:1;iRNA_m5C:0.999536801254216 36993 chr2 192141703 192141703 1 + G A STAD 192141711 + 192141691 192141731 41 GAACCTCTCAATGAGGAGACCTTCATCAACAACCTCAAGAA GAACCTCTCAATAAGGAGACCTTCATCAACAACCTCAAGAA < 41bp 1 0.32015539375133 1 0.0656527876853943 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141711 chr2:192141703 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_37475 0 0 1 0 2 Nucleus 1 0.500235432826859 1 0.999529134346281 hm5C_site_36993 DeepMRMD:1;iRNA_m5C:0.999529134346281 36994 chr10 17277193 17277193 1 + G A STAD 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCATGA < 41bp 1 0.132458440697188 1 0.0817661881446838 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277193 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_37476 0 0 1 0 1 Ribosome 1 0.500231655656223 1 0.999536688687554 hm5C_site_36994 DeepMRMD:1;iRNA_m5C:0.999536688687554 36995 chr10 17277193 17277193 1 + G A STAD 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTCCCTGGAACGCCAGATGCATGAAATGGAAGA < 41bp 1 0.405657723623962 1 0.468558132648468 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277193 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_37477 0 0 1 0 1 Ribosome 1 0.500231643934217 1 0.999536712131565 hm5C_site_36995 DeepMRMD:1;iRNA_m5C:0.999536712131565 36996 chr10 17277193 17277193 1 + G A STAD 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTCCCTGGAACGCCAGATGCATGAAATGGAAGAGAACTTT < 41bp 1 0.566250809601883 1 0.192253440618515 experiment 0.867498380796233 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277193 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_37478 0 0 1 0 1 Ribosome 1 0.500231053589441 1 0.999537892821118 hm5C_site_36996 DeepMRMD:1;iRNA_m5C:0.999537892821118 36997 chr1 214795534 214795534 1 + A T STAD 214795516 + 214795496 214795536 41 AAGTTTCAAGAACTCCAACTCCAACTGGAGAAAGCAAAAGT AAGTTTCAAGAACTCCAACTCCAACTGGAGAAAGCAAATGT < 41bp 1 0.0327326273805474 1 0.166097223758698 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214795516 chr1:214795534 nonsynonymous SNV 0.991 2 39 hm5C_associated_SNPs_37479 0 0 1 0 1 Nucleus 1 0.500231645281727 1 0.999536709436545 hm5C_site_36997 DeepMRMD:1;iRNA_m5C:0.999536709436545 36998 chr1 214795534 214795534 1 + A T STAD 214795520 + 214795500 214795540 41 TTCAAGAACTCCAACTCCAACTGGAGAAAGCAAAAGTGGAA TTCAAGAACTCCAACTCCAACTGGAGAAAGCAAATGTGGAA < 41bp 1 0.670621869227452 1 0.724382281303406 experiment 0.658756261545097 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214795520 chr1:214795534 nonsynonymous SNV 0.991 2 35 hm5C_associated_SNPs_37480 0 0 1 0 1 Nucleus 1 0.500231643921093 0.551235437393188 0.999536712157815 hm5C_site_36998 DeepMRMD:0.551235437393188;iRNA_m5C:0.999536712157815 Medication use (thyroid preparations) 36999 chr17 46136555 46136555 1 + C G STAD 46136553 + 46136533 46136573 41 CGAGCCCGAGCCATGAAGATCCCTTTCACCAATGACAAAAT CGAGCCCGAGCCATGAAGATCCGTTTCACCAATGACAAAAT < 41bp 1 0.0502997928538764 1 0.0712607502937317 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46136553 chr17:46136555 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_37481 0 0 1 0 0 Ribosome 1 0.500231644908515 1 0.99953671018297 hm5C_site_36999 DeepMRMD:1;iRNA_m5C:0.99953671018297 37000 chr1 151020376 151020376 1 + C T STAD 151020391 + 151020371 151020411 41 GGGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTC GGGTCTCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTC < 41bp 1 0.671973875576108 1 0.582908153533936 experiment 0.656052248847783 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020391 chr1:151020376 nonsynonymous SNV 0.667 1 6 hm5C_associated_SNPs_37482 0 0 1 0 0 Cytosol 1 0.500231643921092 0.834183692932128 0.999536712157815 hm5C_site_37000 DeepMRMD:0.834183692932128;iRNA_m5C:0.999536712157815 37001 chr1 151020376 151020376 1 + C T STAD 151020392 + 151020372 151020412 41 GGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTCC GGTCTCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTCC < 41bp 1 0.498655537555108 1 0.773437738418579 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020392 chr1:151020376 nonsynonymous SNV 0.667 1 5 hm5C_associated_SNPs_37483 0 0 1 0 0 Cytosol 1 0.500231643923119 0.453124523162842 0.999536712153762 hm5C_site_37001 DeepMRMD:0.453124523162842;iRNA_m5C:0.999536712153762 37002 chr19 10657566 10657566 1 + C T STAD 10657575 + 10657555 10657595 41 GCTGTCAGGGTCAGCCTCTCCCAGCCGGTACCATGGGCCTG GCTGTCAGGGTTAGCCTCTCCCAGCCGGTACCATGGGCCTG < 41bp 1 0.389977788845178 1 0.29426383972168 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4D ENSG00000130734 CDS Human protein_coding chr19:10657575 chr19:10657566 nonsynonymous SNV 0.006 0 12 hm5C_associated_SNPs_37484 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37002 DeepMRMD:1;iRNA_m5C:0.999536712157815 37003 chr2 217012887 217012887 1 + G A STAD 217012900 + 217012880 217012920 41 TCCTCCCGCTGAGGTGACAACAAAAAGTCAGATTCCTCTCT TCCTCCCACTGAGGTGACAACAAAAAGTCAGATTCCTCTCT < 41bp 1 0.595626657763052 1 0.302519679069519 experiment 0.808746684473895 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRCC5 ENSG00000079246 CDS Human protein_coding chr2:217012900 chr2:217012887 nonsynonymous SNV 0.870 0 8 hm5C_associated_SNPs_37485 0 0 1 0 0 Nucleus 1 0.50024283712811 1 0.999514325743779 hm5C_site_37003 DeepMRMD:1;iRNA_m5C:0.999514325743779 37004 chr14 61346450 61346450 1 + G C STAD 61346465 + 61346445 61346485 41 CACTGGCACCTATTCACAAGCTTGAAGAAGCTCTGTATGAA CACTGCCACCTATTCACAAGCTTGAAGAAGCTCTGTATGAA < 41bp 1 0.576451549121912 1 0.718778073787689 experiment 0.847096901756176 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61346465 chr14:61346450 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_37486 0 0 1 0 0 Ribosome 1 0.500231649569698 0.562443852424622 0.999536700860604 hm5C_site_37004 DeepMRMD:0.562443852424622;iRNA_m5C:0.999536700860604 37005 chr3 148559690 148559690 1 + C T STAD 148559686 + 148559666 148559706 41 CAGAGAGTGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAA CAGAGAGTGGATTTCTCCTGCATTTTGCCAGTGGTTTGTAA < 41bp 1 0.0851624988982927 1 0.0262549519538879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559686 chr3:148559690 synonymous SNV . 0 25 hm5C_associated_SNPs_37487 0 0 0 0 2 exosome 1 0.500231782726572 1 0.999536434546856 hm5C_site_37005 DeepMRMD:1;iRNA_m5C:0.999536434546856 37006 chr3 148559690 148559690 1 + C T STAD 148559693 + 148559673 148559713 41 TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGT TGGATTTCTCCTGCATTTTGCCAGTGGTTTGTAAGAGAGGT < 41bp 1 0.202520507308909 1 0.644473552703857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559693 chr3:148559690 synonymous SNV . 0 18 hm5C_associated_SNPs_37488 0 0 0 0 2 exosome 1 0.500231644307936 0.711052894592286 0.999536711384129 hm5C_site_37006 DeepMRMD:0.711052894592286;iRNA_m5C:0.999536711384129 37007 chr3 148559690 148559690 1 + C T STAD 148559694 + 148559674 148559714 41 GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGTC GGATTTCTCCTGCATTTTGCCAGTGGTTTGTAAGAGAGGTC < 41bp 1 0.489939883718966 1 0.436573386192322 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559694 chr3:148559690 synonymous SNV . 0 17 hm5C_associated_SNPs_37489 0 0 0 0 2 exosome 1 0.50023218347922 1 0.999535633041561 hm5C_site_37007 DeepMRMD:1;iRNA_m5C:0.999535633041561 37008 chr1 228468301 228468301 1 + G A STAD 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAATGTGAAGT < 41bp 1 0.0521219338812494 1 0.117136269807816 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468301 synonymous SNV . 0 33 hm5C_associated_SNPs_37490 0 0 0 0 1 Ribosome 1 0.500231643872768 1 0.999536712254463 hm5C_site_37008 DeepMRMD:1;iRNA_m5C:0.999536712254463 37009 chr17 53014068 53014068 1 + A G STAD 53014053 + 53014033 53014073 41 TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATGTA TTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCGATGTA < 41bp 1 0.696488559491958 1 0.65488076210022 experiment 0.607022881016084 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014053 chr17:53014068 nonsynonymous SNV 0.611 0 36 hm5C_associated_SNPs_37491 0 0 0 0 2 Cytosol 1 0.500231643921185 0.69023847579956 0.99953671215763 hm5C_site_37009 DeepMRMD:0.69023847579956;iRNA_m5C:0.99953671215763 37010 chr11 71502818 71502818 1 + C T STAD 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGTCGTCAGTCAAGTAT < 41bp 1 0.248558489086357 1 0.309241116046906 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502818 nonsynonymous SNV 0.834 2 27 hm5C_associated_SNPs_37492 0 0 0 0 3 Ribosome 1 0.500231718480646 1 0.999536563038707 hm5C_site_37010 DeepMRMD:1;iRNA_m5C:0.999536563038707 37011 chr13 103286381 103286381 1 + G A STAD 103286380 + 103286360 103286400 41 TAACTGGACACTGAGAGGGACGCAGCTGATGAATGGAACAT TAACTGGACACTGAGAGGGACACAGCTGATGAATGGAACAT < 41bp 1 0.414570903364182 1 0.107736349105835 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103286380 chr13:103286381 synonymous SNV . 0 22 hm5C_associated_SNPs_37493 0 0 1 0 2 Nucleus 1 0.500231644031024 1 0.999536711937952 hm5C_site_37011 DeepMRMD:1;iRNA_m5C:0.999536711937952 37012 chr17 41143116 41143116 1 + G A STAD 41143135 + 41143115 41143155 41 TGCCAACCTCCAGGACCTCTCTCTGGGAGGCAAGGATGAGC TACCAACCTCCAGGACCTCTCTCTGGGAGGCAAGGATGAGC < 41bp 1 0.431160263669318 1 0.489218592643738 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RUNDC1 ENSG00000198863 CDS Human protein_coding chr17:41143135 chr17:41143116 nonsynonymous SNV 0.999 1 2 hm5C_associated_SNPs_37494 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37012 DeepMRMD:1;iRNA_m5C:0.999536712157815 37013 chr1 29651765 29651765 1 + G A STAD 29651781 + 29651761 29651801 41 CGCTGCCACAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC CGCTACCACAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC < 41bp 1 0.040232372690272 1 0.0484530627727509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPRU ENSG00000060656 CDS Human protein_coding chr1:29651781 chr1:29651765 nonsynonymous SNV 0.999 1 5 hm5C_associated_SNPs_37496 0 0 1 0 2 Endoplasmic reticulum 1 0.500231861935986 1 0.999536276128027 hm5C_site_37013 DeepMRMD:1;iRNA_m5C:0.999536276128027 37014 chr19 1913067 1913067 1 + G A STAD 1913048 + 1913028 1913068 41 TCGCCCGACGGCGCCCTGGGCACCCGCTTCCGCATCCACGC TCGCCCGACGGCGCCCTGGGCACCCGCTTCCGCATCCACAC < 41bp 1 0.248707680510413 1 0.0779781341552734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADAT3 ENSG00000213638 CDS Human protein_coding chr19:1913048 chr19:1913067 nonsynonymous SNV 0.003 0 40 hm5C_associated_SNPs_37497 0 0 1 0 0 exosome 1 0.500231643921831 1 0.999536712156339 hm5C_site_37014 DeepMRMD:1;iRNA_m5C:0.999536712156339 37015 chr17 45376747 45376747 1 + G A STAD 45376744 + 45376724 45376764 41 GGCTACTACTGCAACTGTACCACGCGTACTGACACCTGCAT GGCTACTACTGCAACTGTACCACACGTACTGACACCTGCAT < 41bp 1 0.325500667749027 1 0.0429875254631042 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376744 chr17:45376747 synonymous SNV . 0 24 hm5C_associated_SNPs_37498 0 0 0 0 1 cytosol 1 0.500247041187795 1 0.999505917624409 hm5C_site_37015 DeepMRMD:1;iRNA_m5C:0.999505917624409 37016 chr12 109629520 109629520 1 + C T STAD 109629531 + 109629511 109629551 41 CCAGAACAACGACATCGACACCGGGTGGTTGGACTACCTCA CCAGAACAATGACATCGACACCGGGTGGTTGGACTACCTCA < 41bp 1 0.305366494709967 1 0.471925258636475 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109629531 chr12:109629520 synonymous SNV . 0 10 hm5C_associated_SNPs_37499 0 0 1 0 1 Nucleus 1 0.500226309387231 1 0.999547381225538 hm5C_site_37016 DeepMRMD:1;iRNA_m5C:0.999547381225538 37017 chr20 43243321 43243321 1 + A C STAD 43243326 + 43243306 43243346 41 AAGCTGGCTGGAGACATGGGCGAGCTGGCACTCGAGGGGGC AAGCTGGCTGGAGACCTGGGCGAGCTGGCACTCGAGGGGGC < 41bp 1 0.664054626265393 1 0.332049250602722 experiment 0.671890747469214 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKIG ENSG00000168734 CDS Human protein_coding chr20:43243326 chr20:43243321 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_37500 0 0 1 0 1 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_37017 DeepMRMD:1;iRNA_m5C:0.999536712157808 37018 chr12 117426554 117426554 1 + C A STAD 117426534 + 117426514 117426554 41 CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCC CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCA < 41bp 1 0.475475774814082 1 0.37824159860611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426534 chr12:117426554 synonymous SNV . 0 41 hm5C_associated_SNPs_37501 0 0 0 0 1 Cytosol 1 0.500231643921002 1 0.999536712157997 hm5C_site_37018 DeepMRMD:1;iRNA_m5C:0.999536712157997 37019 chr15 91432748 91432748 1 + T C STAD 91432750 + 91432730 91432770 41 GGCGCTGTCCCCCACAGGTCCGCACCTGACGTCCCACCCTG GGCGCTGTCCCCCACAGGCCCGCACCTGACGTCCCACCCTG < 41bp 1 0.39037768968293 1 0.113013714551926 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FES ENSG00000182511 CDS Human protein_coding chr15:91432750 chr15:91432748 nonsynonymous SNV 0.220 4 19 hm5C_associated_SNPs_37502 0 0 1 0 1 cytosol 1 0.500231643584299 1 0.999536712831402 hm5C_site_37019 DeepMRMD:1;iRNA_m5C:0.999536712831402 Red blood cell count 37020 chr3 184042682 184042682 1 + G A STAD 184042675 + 184042655 184042695 41 GTGAATGGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAG GTGAATGGCAGGCAGAGGAACGAGGACACCTGAAGGAAGAG < 41bp 1 0.570547115118129 1 0.598645091056824 experiment 0.858905769763743 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042675 chr3:184042682 nonsynonymous SNV 0.973 3 28 hm5C_associated_SNPs_37503 0 0 1 0 1 Nucleus 1 0.500231643922388 0.802709817886352 0.999536712155224 hm5C_site_37020 DeepMRMD:0.802709817886352;iRNA_m5C:0.999536712155224 37021 chr3 184042682 184042682 1 + G A STAD 184042681 + 184042661 184042701 41 GGCAGGCAGAGGAACGAGGACGCCTGAAGGAAGAGCTGGAA GGCAGGCAGAGGAACGAGGACACCTGAAGGAAGAGCTGGAA < 41bp 1 0.43885692561355 1 0.403298795223236 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042681 chr3:184042682 nonsynonymous SNV 0.973 3 22 hm5C_associated_SNPs_37504 0 0 1 0 1 Nucleus 1 0.50023166358031 1 0.999536672839381 hm5C_site_37021 DeepMRMD:1;iRNA_m5C:0.999536672839381 37022 chr7 142458464 142458464 1 + T G STAD 142458446 + 142458426 142458466 41 GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTC GATGACAAGATCGTTGGGGGCTACAACTGTGAGGAGAAGTC < 41bp 1 0.328503262600467 1 0.53781396150589 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458446 chr7:142458464 nonsynonymous SNV 0.734 4 39 hm5C_associated_SNPs_37505 0 0 0 0 1 Cytosol 1 0.500231643920788 0.92437207698822 0.999536712158424 hm5C_site_37022 DeepMRMD:0.92437207698822;iRNA_m5C:0.999536712158424 37023 chr7 142458464 142458464 1 + T G STAD 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAAGTCTGT < 41bp 1 0.195340733736439 1 0.273138880729675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458464 nonsynonymous SNV 0.734 4 36 hm5C_associated_SNPs_37506 0 0 0 0 1 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_37023 DeepMRMD:1;iRNA_m5C:0.99953671215782 37024 chr7 142458464 142458464 1 + T G STAD 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGCTACAACTGTGAGGAGAAGTCTGTCCC < 41bp 1 0.40632835710138 1 0.495922446250916 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458464 nonsynonymous SNV 0.734 4 33 hm5C_associated_SNPs_37507 0 0 0 0 1 Cytosol 1 0.500231628664906 1 0.999536742670187 hm5C_site_37024 DeepMRMD:1;iRNA_m5C:0.999536742670187 37025 chr7 142458464 142458464 1 + T G STAD 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC CTACAACTGTGAGGAGAAGTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.13444668597729 1 0.0815814733505249 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458464 nonsynonymous SNV 0.734 4 19 hm5C_associated_SNPs_37508 0 0 0 0 1 Cytosol 1 0.500231643921089 1 0.999536712157823 hm5C_site_37025 DeepMRMD:1;iRNA_m5C:0.999536712157823 37026 chr7 142458464 142458464 1 + T G STAD 142458470 + 142458450 142458490 41 AACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAA AACTGTGAGGAGAAGTCTGTCCCCTACCAGGTGTCCCTGAA < 41bp 1 0.138300969696902 1 0.198496997356415 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458470 chr7:142458464 nonsynonymous SNV 0.734 4 15 hm5C_associated_SNPs_37509 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37026 DeepMRMD:1;iRNA_m5C:0.999536712157815 37027 chr7 142458464 142458464 1 + T G STAD 142458471 + 142458451 142458491 41 ACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAAT ACTGTGAGGAGAAGTCTGTCCCCTACCAGGTGTCCCTGAAT < 41bp 1 0.133054415550831 1 0.211406677961349 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458471 chr7:142458464 nonsynonymous SNV 0.734 4 14 hm5C_associated_SNPs_37510 0 0 0 0 1 Cytosol 1 0.50023164041903 1 0.99953671916194 hm5C_site_37027 DeepMRMD:1;iRNA_m5C:0.99953671916194 37028 chr7 142458464 142458464 1 + T G STAD 142458472 + 142458452 142458492 41 CTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATT CTGTGAGGAGAAGTCTGTCCCCTACCAGGTGTCCCTGAATT < 41bp 1 0.0197875892880606 1 0.1597800552845 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458472 chr7:142458464 nonsynonymous SNV 0.734 4 13 hm5C_associated_SNPs_37511 0 0 0 0 1 Cytosol 1 0.500231643921095 1 0.99953671215781 hm5C_site_37028 DeepMRMD:1;iRNA_m5C:0.99953671215781 37029 chr7 142458464 142458464 1 + T G STAD 142458473 + 142458453 142458493 41 TGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTC TGTGAGGAGAAGTCTGTCCCCTACCAGGTGTCCCTGAATTC < 41bp 1 0.202142592913962 1 0.075776070356369 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458473 chr7:142458464 nonsynonymous SNV 0.734 4 12 hm5C_associated_SNPs_37512 0 0 0 0 1 Cytosol 1 0.50023163878263 1 0.99953672243474 hm5C_site_37029 DeepMRMD:1;iRNA_m5C:0.99953672243474 37030 chr7 142458464 142458464 1 + T G STAD 142458476 + 142458456 142458496 41 GAGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG GAGGAGAAGTCTGTCCCCTACCAGGTGTCCCTGAATTCTGG < 41bp 1 0.256643829438871 1 0.259568691253662 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458476 chr7:142458464 nonsynonymous SNV 0.734 4 9 hm5C_associated_SNPs_37513 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37030 DeepMRMD:1;iRNA_m5C:0.999536712157815 37031 chr7 142458464 142458464 1 + T G STAD 142458477 + 142458457 142458497 41 AGGAGAATTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC AGGAGAAGTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGC < 41bp 1 0.656359075347118 1 0.846531391143799 experiment 0.687281849305764 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458477 chr7:142458464 nonsynonymous SNV 0.734 4 8 hm5C_associated_SNPs_37514 0 0 0 0 1 Cytosol 1 0.500243189903201 0.306937217712402 0.999513620193598 hm5C_site_37031 DeepMRMD:0.306937217712402;iRNA_m5C:0.999513620193598 37032 chr7 142458464 142458464 1 + T G STAD 142458484 + 142458464 142458504 41 TTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT GTCTGTCCCCTACCAGGTGTCCCTGAATTCTGGCTACCACT < 41bp 1 0.117595011057631 1 0.0558074712753296 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458484 chr7:142458464 nonsynonymous SNV 0.734 4 1 hm5C_associated_SNPs_37515 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37032 DeepMRMD:1;iRNA_m5C:0.999536712157815 37033 chr6 57012312 57012312 1 + A C STAD 57012315 + 57012295 57012335 41 CCTGGTTCTGTGAATGCAATCAGCGATTCCCAAGTGAAGAT CCTGGTTCTGTGAATGCCATCAGCGATTCCCAAGTGAAGAT < 41bp 1 0.408900374267449 1 0.519609868526459 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF451 ENSG00000112200 CDS Human protein_coding chr6:57012315 chr6:57012312 nonsynonymous SNV 0.952 0 18 hm5C_associated_SNPs_37516 0 0 1 0 0 chromatin 1 0.500231643920854 0.960780262947082 0.999536712158291 hm5C_site_37033 DeepMRMD:0.960780262947082;iRNA_m5C:0.999536712158291 37034 chr19 41077980 41077980 1 + G T STAD 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GTACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG < 41bp 1 0.401147826421513 1 0.896226286888123 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41077980 nonsynonymous SNV 0.990 3 2 hm5C_associated_SNPs_37517 0 0 1 0 1 cytosol 1 0.500231346467572 0.207547426223754 0.999537307064856 hm5C_site_37034 DeepMRMD:0.207547426223754;iRNA_m5C:0.999537307064856 37035 chr20 18142527 18142527 1 + G A STAD 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCAG < 41bp 1 0.11151116490325 1 0.0425105690956116 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142527 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_37518 0 0 1 0 2 Nucleus 1 0.500231643942612 1 0.999536712114776 hm5C_site_37035 DeepMRMD:1;iRNA_m5C:0.999536712114776 Pyridoxal 5'-phosphate levels 37036 chr19 49652922 49652922 1 + C T STAD 49652931 + 49652911 49652951 41 TCGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCC TCGTTCGGCTGTAGCGGGAGCCCTGGGCTCTCCGGGGCTCC < 41bp 1 0.117766277324477 1 0.0886055827140808 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652931 chr19:49652922 nonsynonymous SNV 0.987 0 12 hm5C_associated_SNPs_37519 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37036 DeepMRMD:1;iRNA_m5C:0.999536712157815 37037 chr19 49652922 49652922 1 + C T STAD 49652932 + 49652912 49652952 41 CGTTCGGCTGCAGCGGGAGCCCTGGGCTCTCCGGGGCTCCC CGTTCGGCTGTAGCGGGAGCCCTGGGCTCTCCGGGGCTCCC < 41bp 1 0.217112767019216 1 0.39899343252182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652932 chr19:49652922 nonsynonymous SNV 0.987 0 11 hm5C_associated_SNPs_37520 0 0 1 0 1 Cytosol 1 0.500231643871182 1 0.999536712257636 hm5C_site_37037 DeepMRMD:1;iRNA_m5C:0.999536712257636 37038 chr19 3525967 3525967 1 + G C STAD 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGCAG < 41bp 1 0.447094462270034 1 0.749253749847412 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525967 nonsynonymous SNV 0.997 4 39 hm5C_associated_SNPs_37521 0 0 1 0 1 Ribosome 1 0.50023164393158 0.501492500305176 0.999536712136839 hm5C_site_37038 DeepMRMD:0.501492500305176;iRNA_m5C:0.999536712136839 37039 chr19 7987364 7987364 1 + T G STAD 7987382 + 7987362 7987402 41 CTTCCAGAGGAGCTGCCACTCCTGCCCTGCACAGCCCTGGT CTGCCAGAGGAGCTGCCACTCCTGCCCTGCACAGCCCTGGT < 41bp 1 0.158491972441215 1 0.306817919015884 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7987382 chr19:7987364 synonymous SNV . 0 3 hm5C_associated_SNPs_37522 0 0 0 0 0 Ribosome 1 0.500221970423661 1 0.999556059152678 hm5C_site_37039 DeepMRMD:1;iRNA_m5C:0.999556059152678 37040 chr16 70575719 70575719 1 + T C STAD 70575721 + 70575701 70575741 41 TGAGTTGGACAGCCTCTCTCCCATTCTGTTTTGCCAGGTTG TGAGTTGGACAGCCTCTCCCCCATTCTGTTTTGCCAGGTTG < 41bp 1 0.0355885813633419 1 0.0568810999393463 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70575721 chr16:70575719 synonymous SNV . 0 19 hm5C_associated_SNPs_37523 0 0 1 0 1 Cytosol 1 0.500231643920593 1 0.999536712158815 hm5C_site_37040 DeepMRMD:1;iRNA_m5C:0.999536712158815 37041 chr1 230379172 230379172 1 + A C STAD 230379152 + 230379132 230379172 41 AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGC < 41bp 1 0.0845525379309019 1 0.115952759981155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230379152 chr1:230379172 nonsynonymous SNV 0.853 4 41 hm5C_associated_SNPs_37524 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_37041 DeepMRMD:1;iRNA_m5C:0.999536712157815 37042 chr20 5958554 5958554 1 + T A STAD 5958574 + 5958554 5958594 41 TGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAA AGTTTGTGGTAACACCACGACCACCTCTGGTCTGACGGTAA < 41bp 1 0.0978552596466617 1 0.190364748239517 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCM8 ENSG00000125885 CDS Human protein_coding chr20:5958574 chr20:5958554 stopgain 1.000 1 1 hm5C_associated_SNPs_37525 0 0 1 0 1 Ribosome 1 0.500231643942233 1 0.999536712115534 hm5C_site_37042 DeepMRMD:1;iRNA_m5C:0.999536712115534 37043 chr11 108205742 108205742 1 + T G STAD 108205739 + 108205719 108205759 41 AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTCGCT AAATCTGGTGACTATACAGTCATGTAAAGCAGAATTTCGCT < 41bp 1 0.0817669279944827 1 0.0784746408462524 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108205739 chr11:108205742 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_37527 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37043 DeepMRMD:1;iRNA_m5C:0.999536712157815 37044 chr6 99283474 99283474 1 + C T STAD 99283470 + 99283450 99283490 41 ACCCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGT ACCCACACCAGCAGCCGCCGCCCCTGCCGCCCCCGCAGGGT < 41bp 1 0.327518172265824 1 0.271976619958878 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283470 chr6:99283474 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_37528 0 0 0 0 0 exosome 1 0.500231640587622 1 0.999536718824757 hm5C_site_37044 DeepMRMD:1;iRNA_m5C:0.999536718824757 37045 chr6 99283474 99283474 1 + C T STAD 99283471 + 99283451 99283491 41 CCCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTC CCCACACCAGCAGCCGCCGCCCCTGCCGCCCCCGCAGGGTC < 41bp 1 0.266744088192815 1 0.388267815113068 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283471 chr6:99283474 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_37529 0 0 0 0 0 exosome 1 0.500215518002941 1 0.999568963994118 hm5C_site_37045 DeepMRMD:1;iRNA_m5C:0.999568963994118 37046 chr6 99283474 99283474 1 + C T STAD 99283472 + 99283452 99283492 41 CCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCC CCACACCAGCAGCCGCCGCCCCTGCCGCCCCCGCAGGGTCC < 41bp 1 0.248424754445514 1 0.417592763900757 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283472 chr6:99283474 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_37530 0 0 0 0 0 exosome 1 0.500231196052117 1 0.999537607895767 hm5C_site_37046 DeepMRMD:1;iRNA_m5C:0.999537607895767 37047 chr6 99283474 99283474 1 + C T STAD 99283473 + 99283453 99283493 41 CACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCG CACACCAGCAGCCGCCGCCCCTGCCGCCCCCGCAGGGTCCG < 41bp 1 0.654079239705601 1 0.14303070306778 experiment 0.691841520588799 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283473 chr6:99283474 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_37531 0 0 0 0 0 exosome 1 0.500231643206971 1 0.999536713586058 hm5C_site_37047 DeepMRMD:1;iRNA_m5C:0.999536713586058 37048 chr6 99283474 99283474 1 + C T STAD 99283476 + 99283456 99283496 41 ACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCGCCT ACCAGCAGCCGCCGCCCCTGCCGCCCCCGCAGGGTCCGCCT < 41bp 1 0.504318865964044 1 0.436218172311783 experiment 0.991362268071913 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283476 chr6:99283474 nonsynonymous SNV 0.997 2 19 hm5C_associated_SNPs_37532 0 0 0 0 0 exosome 1 0.500231642378143 1 0.999536715243714 hm5C_site_37048 DeepMRMD:1;iRNA_m5C:0.999536715243714 37049 chr6 99283474 99283474 1 + C T STAD 99283477 + 99283457 99283497 41 CCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCGCCTG CCAGCAGCCGCCGCCCCTGCCGCCCCCGCAGGGTCCGCCTG < 41bp 1 0.695454056575545 1 0.406786382198334 experiment 0.60909188684891 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283477 chr6:99283474 nonsynonymous SNV 0.997 2 18 hm5C_associated_SNPs_37533 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37049 DeepMRMD:1;iRNA_m5C:0.999536712157815 37050 chr1 206858688 206858688 1 + G C STAD 206858686 + 206858666 206858706 41 CCCCGGCGCAGCCGCCGCCGCCGCCCCCGCAGCAGTTCCCG CCCCGGCGCAGCCGCCGCCGCCCCCCCCGCAGCAGTTCCCG < 41bp 1 0.221879435921644 1 0.0656852126121521 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206858686 chr1:206858688 synonymous SNV . 0 23 hm5C_associated_SNPs_37534 0 0 1 0 0 Ribosome 1 0.500231643921089 1 0.999536712157822 hm5C_site_37050 DeepMRMD:1;iRNA_m5C:0.999536712157822 37051 chr17 60766976 60766976 1 + C T STAD 60766960 + 60766940 60766980 41 CCTACCTCAACGGCACCTTCCGGCTGCTTCAGAAGCCGCTG CCTACCTCAACGGCACCTTCCGGCTGCTTCAGAAGCTGCTG < 41bp 1 0.386820629498755 1 0.760228931903839 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60766960 chr17:60766976 nonsynonymous SNV 0.892 3 37 hm5C_associated_SNPs_37535 0 0 0 0 1 Cytosol 1 0.500231643921093 0.479542136192322 0.999536712157814 hm5C_site_37051 DeepMRMD:0.479542136192322;iRNA_m5C:0.999536712157814 37052 chr21 30714967 30714967 1 + G A STAD 30714981 + 30714961 30715001 41 CTGACCGGCCTCCAGCAGTGCTGCCTCCCTGTGCCAGAGGA CTGACCAGCCTCCAGCAGTGCTGCCTCCCTGTGCCAGAGGA < 41bp 1 0.310161451727672 1 0.0805723667144775 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BACH1 ENSG00000156273 CDS Human protein_coding chr21:30714981 chr21:30714967 nonsynonymous SNV 0.012 0 7 hm5C_associated_SNPs_37536 0 0 1 0 0 Cytosol 1 0.5002316439211 1 0.9995367121578 hm5C_site_37052 DeepMRMD:1;iRNA_m5C:0.9995367121578 37053 chr17 74078041 74078041 1 + G A STAD 74078053 - 74078033 74078073 41 GGCTGGGGCCGCTCTTGGCCCCAAGGTTGCCCCGGGCCAGC GGCTGGGGCCGCTCTTGGCCCCAAGGTTGCCCTGGGCCAGC < 41bp 1 0.461508972316328 1 0.189685851335526 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZACN ENSG00000186919 CDS Human protein_coding chr17:74078053 chr17:74078041 nonsynonymous SNV 0.003 1 33 hm5C_associated_SNPs_37537 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37053 DeepMRMD:1;iRNA_m5C:0.999536712157815 37054 chr17 74078041 74078041 1 + G A STAD 74078054 - 74078034 74078074 41 GGGCTGGGGCCGCTCTTGGCCCCAAGGTTGCCCCGGGCCAG GGGCTGGGGCCGCTCTTGGCCCCAAGGTTGCCCTGGGCCAG < 41bp 1 0.637789464033845 1 0.3298499584198 experiment 0.72442107193231 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZACN ENSG00000186919 CDS Human protein_coding chr17:74078054 chr17:74078041 nonsynonymous SNV 0.003 1 34 hm5C_associated_SNPs_37538 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37054 DeepMRMD:1;iRNA_m5C:0.999536712157815 37055 chr22 32241050 32241050 1 + C A STAD 32241034 + 32241014 32241054 41 TCCCTGAAGTTCTGGAGGACCCGCTTCCTGCTGCTGCCAGC TCCCTGAAGTTCTGGAGGACCCGCTTCCTGCTGCTGACAGC < 41bp 1 0.256695625668916 1 0.100701183080673 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32241034 chr22:32241050 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_37540 0 0 0 0 0 chromatin 1 0.500231660975565 1 0.99953667804887 hm5C_site_37055 DeepMRMD:1;iRNA_m5C:0.99953667804887 37056 chr11 12281433 12281433 1 + G A STAD 12281442 + 12281422 12281462 41 CACCCTGGAAGGCAGCCCCCCAGGTATCTCCACCTCCTTCT CACCCTGGAAGACAGCCCCCCAGGTATCTCCACCTCCTTCT < 41bp 1 0.564615743546974 1 0.134138166904449 experiment 0.870768512906052 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12281442 chr11:12281433 nonsynonymous SNV 0.973 0 12 hm5C_associated_SNPs_37541 0 0 1 1 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37056 DeepMRMD:1;iRNA_m5C:0.999536712157815 37057 chr5 33459936 33459936 1 + C T STAD 33459929 + 33459909 33459949 41 CCTTTGAGGTGGAGAAGGAGCTGTTTGCCCTGAAACCCATG CCTTTGAGGTGGAGAAGGAGCTGTTTGTCCTGAAACCCATG < 41bp 1 0.472487495206803 1 0.0691403448581696 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33459929 chr5:33459936 nonsynonymous SNV 0.972 4 28 hm5C_associated_SNPs_37542 0 0 1 0 1 Nucleus 1 0.50023164392111 1 0.999536712157781 hm5C_site_37057 DeepMRMD:1;iRNA_m5C:0.999536712157781 37058 chr18 8635547 8635547 1 + C T STAD 8635557 + 8635537 8635577 41 TCAGAAGATGCAGAGCTTCTCTTAGTTGGAAATAAGTTGGA TCAGAAGATGTAGAGCTTCTCTTAGTTGGAAATAAGTTGGA < 41bp 1 0.504031114754782 1 0.472482770681381 experiment 0.991937770490436 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB12 ENSG00000206418 CDS Human protein_coding chr18:8635557 chr18:8635547 nonsynonymous SNV 0.993 0 11 hm5C_associated_SNPs_37543 0 0 1 0 2 Ribosome 1 0.500231643921095 1 0.999536712157811 hm5C_site_37058 DeepMRMD:1;iRNA_m5C:0.999536712157811 37059 chr22 44547380 44547380 1 + G A STAD 44547390 + 44547370 44547410 41 TCACTTTTGTGAACAAGCACCTGAACAAGCTGAATTTGGAG TCACTTTTGTAAACAAGCACCTGAACAAGCTGAATTTGGAG < 41bp 1 0.223541908298657 1 0.488171607255936 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARVB ENSG00000188677 CDS Human protein_coding chr22:44547390 chr22:44547380 synonymous SNV . 0 11 hm5C_associated_SNPs_37544 0 0 0 0 2 Ribosome 1 0.500230732293091 1 0.999538535413818 hm5C_site_37059 DeepMRMD:1;iRNA_m5C:0.999538535413818 37060 chr19 19638863 19638863 1 + C T STAD 19638852 + 19638832 19638872 41 TCCACACAACCCGCTGGGTGCCCCCCTTGATCGGGGAGCTG TCCACACAACCCGCTGGGTGCCCCCCTTGATTGGGGAGCTG < 41bp 1 0.154271000625435 1 0.0422485172748566 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638852 chr19:19638863 synonymous SNV . 0 32 hm5C_associated_SNPs_37545 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_37060 DeepMRMD:1;iRNA_m5C:0.999536712157815 37061 chr16 56362621 56362621 1 + A G STAD 56362604 + 56362584 56362624 41 AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCATGA AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCGTGA < 41bp 1 0.489461485599856 1 0.603116035461426 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56362604 chr16:56362621 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_37547 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921186 0.793767929077148 0.999536712157629 hm5C_site_37061 DeepMRMD:0.793767929077148;iRNA_m5C:0.999536712157629 37062 chr19 52819102 52819102 1 + A G STAD 52819117 + 52819097 52819137 41 TCCTGACCTGAATATTAACTCCATGTTGGAGCAAAGGAGGG TCCTGGCCTGAATATTAACTCCATGTTGGAGCAAAGGAGGG < 41bp 1 0.187173973921798 1 0.329226970672607 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52819117 chr19:52819102 nonsynonymous SNV 0.099 0 6 hm5C_associated_SNPs_37548 0 0 1 0 1 Cytosol 1 0.50023165187168 1 0.99953669625664 hm5C_site_37062 DeepMRMD:1;iRNA_m5C:0.99953669625664 37063 chr1 16261125 16261125 1 + C T STAD 16261121 + 16261101 16261141 41 CCATGCCTGTGATCGACGATCGTCCGGCAGACGCGGGCTCA CCATGCCTGTGATCGACGATCGTCTGGCAGACGCGGGCTCA < 41bp 1 0.218172222182095 1 0.0936138927936554 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16261121 chr1:16261125 nonsynonymous SNV 0.070 1 25 hm5C_associated_SNPs_37549 0 0 1 0 0 Endoplasmic reticulum 1 0.500237457911409 1 0.999525084177181 hm5C_site_37063 DeepMRMD:1;iRNA_m5C:0.999525084177181 37064 chrX 70517705 70517705 1 + C T STAD 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAAGAGCGCAGGTGCCGTGAAGAAGAGATGCGGCG < 41bp 1 0.21523530044196 1 0.251962333917618 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517705 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_37550 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37064 DeepMRMD:1;iRNA_m5C:0.999536712157815 37065 chr11 2424091 2424091 1 + G A STAD 2424079 + 2424059 2424099 41 CCCTCACCCCCGTCAGGCCTCCTCCCAGCCACGGTGCAGCC CCCTCACCCCCGTCAGGCCTCCTCCCAGCCACAGTGCAGCC < 41bp 1 0.0476719495994179 1 0.03143510222435 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSSC4 ENSG00000184281 CDS Human protein_coding chr11:2424079 chr11:2424091 synonymous SNV . 0 33 hm5C_associated_SNPs_37551 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_37065 DeepMRMD:1;iRNA_m5C:0.999536712157816 37066 chr7 44806229 44806229 1 + T C STAD 44806215 + 44806195 44806235 41 CTGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCC CTGCCACAGGCGTGATGGGGCCCCCCAGCATGTCCGGAGCC < 41bp 1 0.114189477561323 1 0.160823553800583 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806215 chr7:44806229 synonymous SNV . 0 35 hm5C_associated_SNPs_37552 0 0 0 0 1 Cytosol 1 0.500231643917903 1 0.999536712164194 hm5C_site_37066 DeepMRMD:1;iRNA_m5C:0.999536712164194 37067 chr7 44806229 44806229 1 + T C STAD 44806216 + 44806196 44806236 41 TGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCG TGCCACAGGCGTGATGGGGCCCCCCAGCATGTCCGGAGCCG < 41bp 1 0.138813656999904 1 0.132248103618622 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806216 chr7:44806229 synonymous SNV . 0 34 hm5C_associated_SNPs_37553 0 0 0 0 1 Cytosol 1 0.500231643918755 1 0.99953671216249 hm5C_site_37067 DeepMRMD:1;iRNA_m5C:0.99953671216249 37068 chr7 44806229 44806229 1 + T C STAD 44806217 + 44806197 44806237 41 GCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGG GCCACAGGCGTGATGGGGCCCCCCAGCATGTCCGGAGCCGG < 41bp 1 0.460224769290993 1 0.248259127140045 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806217 chr7:44806229 synonymous SNV . 0 33 hm5C_associated_SNPs_37554 0 0 0 0 1 Cytosol 1 0.500231644859956 1 0.999536710280089 hm5C_site_37068 DeepMRMD:1;iRNA_m5C:0.999536710280089 37069 chr7 44806229 44806229 1 + T C STAD 44806218 + 44806198 44806238 41 CCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGG CCACAGGCGTGATGGGGCCCCCCAGCATGTCCGGAGCCGGG < 41bp 1 0.120990557109197 1 0.116515219211578 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806218 chr7:44806229 synonymous SNV . 0 32 hm5C_associated_SNPs_37555 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37069 DeepMRMD:1;iRNA_m5C:0.999536712157815 37070 chr7 44806229 44806229 1 + T C STAD 44806219 + 44806199 44806239 41 CACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGGG CACAGGCGTGATGGGGCCCCCCAGCATGTCCGGAGCCGGGG < 41bp 1 0.134923208471007 1 0.39703831076622 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806219 chr7:44806229 synonymous SNV . 0 31 hm5C_associated_SNPs_37556 0 0 0 0 1 Cytosol 1 0.500231643998283 1 0.999536712003434 hm5C_site_37070 DeepMRMD:1;iRNA_m5C:0.999536712003434 37071 chr7 44806229 44806229 1 + T C STAD 44806243 + 44806223 44806263 41 CATGTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACG CATGTCCGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACG < 41bp 1 0.558211523974927 1 0.609718143939972 experiment 0.883576952050145 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806243 chr7:44806229 synonymous SNV . 0 7 hm5C_associated_SNPs_37557 0 0 0 0 1 Cytosol 1 0.500231815943319 0.780563712120056 0.999536368113362 hm5C_site_37071 DeepMRMD:0.780563712120056;iRNA_m5C:0.999536368113362 37072 chr7 44806229 44806229 1 + T C STAD 44806244 + 44806224 44806264 41 ATGTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGT ATGTCCGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGT < 41bp 1 0.344460966448953 1 0.402929723262787 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806244 chr7:44806229 synonymous SNV . 0 6 hm5C_associated_SNPs_37558 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37072 DeepMRMD:1;iRNA_m5C:0.999536712157815 37073 chr7 44806229 44806229 1 + T C STAD 44806245 + 44806225 44806265 41 TGTCTGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGTG TGTCCGGAGCCGGGGAGGCCCCAGAACCAGCTCTGGACGTG < 41bp 1 0.578242754810038 1 0.407562792301178 experiment 0.843514490379923 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806245 chr7:44806229 synonymous SNV . 0 5 hm5C_associated_SNPs_37559 0 0 0 0 1 Cytosol 1 0.500231370056537 1 0.999537259886927 hm5C_site_37073 DeepMRMD:1;iRNA_m5C:0.999537259886927 37074 chr11 86017511 86017511 1 + A G STAD 86017502 + 86017482 86017522 41 GGGAAGCCAAGTGCCATCTTCAAAATTTCAGGTCTTAAATC GGGAAGCCAAGTGCCATCTTCAAAATTTCGGGTCTTAAATC < 41bp 1 0.608189702622391 1 0.509992957115173 experiment 0.783620594755218 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86017502 chr11:86017511 synonymous SNV . 0 30 hm5C_associated_SNPs_37561 0 0 0 3 1 nucleolus 1 0.500231643921093 0.980014085769654 0.999536712157815 hm5C_site_37074 DeepMRMD:0.980014085769654;iRNA_m5C:0.999536712157815 37075 chr19 49685882 49685882 1 + G T STAD 49685868 + 49685848 49685888 41 AAGCTTCCCTCATGGACGCCCTGCTGAATGACCGGCCTGAG AAGCTTCCCTCATGGACGCCCTGCTGAATGACCGTCCTGAG < 41bp 1 0.393019565921284 1 0.0922068357467651 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49685868 chr19:49685882 synonymous SNV . 0 35 hm5C_associated_SNPs_37562 0 0 1 0 1 chromatin 1 0.500231643933619 1 0.999536712132762 hm5C_site_37075 DeepMRMD:1;iRNA_m5C:0.999536712132762 37076 chr1 114483597 114483597 1 + C T STAD 114483612 + 114483592 114483632 41 TAGGCCGGGGGACATTTGGACAGGTGGCTAAGTGCTGGAAG TAGGCTGGGGGACATTTGGACAGGTGGCTAAGTGCTGGAAG < 41bp 1 0.671503875408556 1 0.712021470069885 experiment 0.656992249182888 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114483612 chr1:114483597 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_37563 0 0 1 0 0 Cytosol 1 0.500231643921089 0.57595705986023 0.999536712157822 hm5C_site_37076 DeepMRMD:0.57595705986023;iRNA_m5C:0.999536712157822 37077 chr17 16332204 16332204 1 + C T STAD 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGTTTGTGTCTGCGCTGGTGCTGGGCTGGC < 41bp 1 0.658088749569967 1 0.746399343013763 experiment 0.683822500860066 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332204 nonsynonymous SNV 0.912 5 14 hm5C_associated_SNPs_37564 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643971546 0.507201313972474 0.999536712056909 hm5C_site_37077 DeepMRMD:0.507201313972474;iRNA_m5C:0.999536712056909 37078 chr3 47456465 47456465 1 + C A STAD 47456479 - 47456459 47456499 41 GGCCTTTTGTCCTCAGGGACCCCAGGGCGGGGCAGTTCCCC GGCCTTTTGTCCTCAGGGACCCCAGGGCGGGGCATTTCCCC < 41bp 1 0.179628388555803 1 0.252357542514801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAP ENSG00000114650 CDS Human protein_coding chr3:47456479 chr3:47456465 nonsynonymous SNV 0.963 3 35 hm5C_associated_SNPs_37565 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37078 DeepMRMD:1;iRNA_m5C:0.999536712157815 37079 chr4 154216607 154216607 1 + A G STAD 154216623 + 154216603 154216643 41 AACGAGCTGGCCGACCAGGACTTCCCCTTGCACCCGCGGGA AACGGGCTGGCCGACCAGGACTTCCCCTTGCACCCGCGGGA < 41bp 1 0.130956707577813 1 0.0360254049301147 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154216623 chr4:154216607 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_37566 0 0 0 0 0 Ribosome 1 0.500231643921673 1 0.999536712156653 hm5C_site_37079 DeepMRMD:1;iRNA_m5C:0.999536712156653 37080 chr17 7476162 7476162 1 + G A STAD 7476180 + 7476160 7476200 41 ATGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA ATATCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCA < 41bp 1 0.348131850167645 1 0.151061087846756 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476180 chr17:7476162 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_37567 0 0 1 0 1 Cytosol 1 0.500225793662892 1 0.999548412674215 hm5C_site_37080 DeepMRMD:1;iRNA_m5C:0.999548412674215 37081 chr17 7476162 7476162 1 + G A STAD 7476181 + 7476161 7476201 41 TGTCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA TATCTGCGAGCCAGGATTCCCGGTAAGAAAGGCATTTGCAA < 41bp 1 0.675393906285368 1 0.492664247751236 experiment 0.649212187429263 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7476181 chr17:7476162 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_37568 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_37081 DeepMRMD:1;iRNA_m5C:0.999536712157816 37082 chrX 41027344 41027344 1 + A G STAD 41027349 + 41027329 41027369 41 GTTTTGGATGGTGACAAAGACAGTGTTAATTGTGCAAGACA GTTTTGGATGGTGACGAAGACAGTGTTAATTGTGCAAGACA < 41bp 1 0.322410504809931 1 0.351355195045471 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41027349 chrX:41027344 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_37569 0 0 1 0 1 Nucleus 1 0.500220315232366 1 0.999559369535268 hm5C_site_37082 DeepMRMD:1;iRNA_m5C:0.999559369535268 37083 chr12 132326256 132326256 1 + T C STAD 132326257 + 132326237 132326277 41 GTGGCCGCTGCACACTCCATCATGCGGCCGTACTACCAGGG GTGGCCGCTGCACACTCCACCATGCGGCCGTACTACCAGGG < 41bp 1 0.203663876372109 1 0.431082487106323 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132326257 chr12:132326256 nonsynonymous SNV 0.670 3 20 hm5C_associated_SNPs_37570 0 0 0 0 2 Cytosol 1 0.500231638790816 1 0.999536722418368 hm5C_site_37083 DeepMRMD:1;iRNA_m5C:0.999536722418368 37084 chr19 42397364 42397364 1 + G A STAD 42397351 + 42397331 42397371 41 TCTTCCTCCTACAGACATACCATCTCTACCGACGAAGAAAA TCTTCCTCCTACAGACATACCATCTCTACCGACAAAGAAAA < 41bp 1 0.0602606018685697 1 0.0283128321170807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42397351 chr19:42397364 nonsynonymous SNV 0.994 5 34 hm5C_associated_SNPs_37571 0 0 1 0 2 Cytosol 1 0.500231643922746 1 0.999536712154508 hm5C_site_37084 DeepMRMD:1;iRNA_m5C:0.999536712154508 37085 chr6 3850780 3850780 1 + G A STAD 3850769 + 3850749 3850789 41 TCATGTTCATCAAGGAGGACCTCATCCTGCCGCACTACCAC TCATGTTCATCAAGGAGGACCTCATCCTGCCACACTACCAC < 41bp 1 0.272413654263792 1 0.192338407039642 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM50B ENSG00000145945 CDS Human protein_coding chr6:3850769 chr6:3850780 synonymous SNV . 0 32 hm5C_associated_SNPs_37572 0 0 0 0 0 exosome 1 0.500231646708659 1 0.999536706582682 hm5C_site_37085 DeepMRMD:1;iRNA_m5C:0.999536706582682 37086 chr19 4323385 4323385 1 + G A STAD 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCCCGCACCAAACAAGTGCTACACACTTTCAAGACCAGG < 41bp 1 0.231214203366065 1 0.203032821416855 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323385 nonsynonymous SNV 0.765 0 23 hm5C_associated_SNPs_37573 0 0 1 0 2 cytosol 1 0.500231644186071 1 0.999536711627858 hm5C_site_37086 DeepMRMD:1;iRNA_m5C:0.999536711627858 37087 chr19 35504571 35504571 1 + A C STAD 35504562 + 35504542 35504582 41 CGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGA CGTGGCCATGTCACGCCCAACCTTTCCCGCGCCAGCAGCGA < 41bp 1 0.0210899222925039 1 0.0497511625289917 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504562 chr19:35504571 synonymous SNV . 0 30 hm5C_associated_SNPs_37575 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921076 1 0.999536712157849 hm5C_site_37087 DeepMRMD:1;iRNA_m5C:0.999536712157849 37088 chr19 35504571 35504571 1 + A C STAD 35504567 + 35504547 35504587 41 CCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACGCAG CCATGTCACGCCCAACCTTTCCCGCGCCAGCAGCGACGCAG < 41bp 1 0.372333785180075 1 0.0645481050014496 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504567 chr19:35504571 synonymous SNV . 0 25 hm5C_associated_SNPs_37576 0 0 1 0 1 Endoplasmic reticulum 1 0.500231651569975 1 0.999536696860049 hm5C_site_37088 DeepMRMD:1;iRNA_m5C:0.999536696860049 37089 chr14 64990077 64990077 1 + C T STAD 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGAGTGTCAGTTGCGACTGCACAATGATATGCACAAAGGC < 41bp 1 0.650276879289669 1 0.635713934898376 experiment 0.699446241420662 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990077 nonsynonymous SNV 0.998 3 6 hm5C_associated_SNPs_37577 0 0 1 0 1 Cytosol 1 0.500336238767069 0.728572130203248 0.999327522465861 hm5C_site_37089 DeepMRMD:0.728572130203248;iRNA_m5C:0.999327522465861 37090 chr19 36273737 36273737 1 + A C STAD 36273734 + 36273714 36273754 41 CCAACACCAGCATGCATGCCCGCAACCTGGCCATTGTCTGG CCAACACCAGCATGCATGCCCGCCACCTGGCCATTGTCTGG < 41bp 1 0.592548448298799 1 0.433255851268768 experiment 0.814903103402403 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36273734 chr19:36273737 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_37578 0 0 0 0 2 chromatin 1 0.500231643921089 1 0.999536712157821 hm5C_site_37090 DeepMRMD:1;iRNA_m5C:0.999536712157821 37091 chr17 77077146 77077146 1 + A T STAD 77077130 + 77077110 77077150 41 AAAGTGGGCAGCTCAAATGGCAAGACGAACTCAACCAGCAC AAAGTGGGCAGCTCAAATGGCAAGACGAACTCAACCTGCAC < 41bp 1 0.655068926122156 1 0.605586230754852 experiment 0.689862147755687 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ENGASE ENSG00000167280 CDS Human protein_coding chr17:77077130 chr17:77077146 nonsynonymous SNV 0.036 0 37 hm5C_associated_SNPs_37579 0 0 1 0 1 chromatin 1 0.500231643799609 0.788827538490296 0.999536712400781 hm5C_site_37091 DeepMRMD:0.788827538490296;iRNA_m5C:0.999536712400781 37092 chr14 37754628 37754628 1 + A G STAD 37754619 + 37754599 37754639 41 GGAGAGAGATGAAGCAATTGCACGAGCCAAGCATATGGAAA GGAGAGAGATGAAGCAATTGCACGAGCCAGGCATATGGAAA < 41bp 1 0.539182430888435 1 0.629390954971313 experiment 0.921635138223131 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37754619 chr14:37754628 nonsynonymous SNV 0.930 0 30 hm5C_associated_SNPs_37580 0 0 1 0 0 chromatin 1 0.500231649589316 0.741218090057374 0.999536700821369 hm5C_site_37092 DeepMRMD:0.741218090057374;iRNA_m5C:0.999536700821369 37093 chr14 62204985 62204985 1 + A C STAD 62204993 + 62204973 62205013 41 AAGTTGCATTAAAATTAGAACCAAATCCAGAGTCACTGGAA AAGTTGCATTAACATTAGAACCAAATCCAGAGTCACTGGAA < 41bp 1 0.271210232550742 1 0.1056809425354 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIF1A ENSG00000100644 CDS Human protein_coding chr14:62204993 chr14:62204985 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_37582 0 0 1 0 0 Cytosol 1 0.50023173358046 1 0.99953653283908 hm5C_site_37093 DeepMRMD:1;iRNA_m5C:0.99953653283908 37094 chr13 28752031 28752031 1 + T G STAD 28752016 + 28751996 28752036 41 TTTCAGATCCTCTAACATCACCTGCTTCATCCTTGTTTAAT TTTCAGATCCTCTAACATCACCTGCTTCATCCTTGGTTAAT < 41bp 1 0.105954715027167 1 0.0452249348163605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752016 chr13:28752031 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_37583 0 0 1 0 2 Ribosome 1 0.500231662653441 1 0.999536674693118 hm5C_site_37094 DeepMRMD:1;iRNA_m5C:0.999536674693118 37095 chr13 28752031 28752031 1 + T G STAD 28752017 + 28751997 28752037 41 TTCAGATCCTCTAACATCACCTGCTTCATCCTTGTTTAATG TTCAGATCCTCTAACATCACCTGCTTCATCCTTGGTTAATG < 41bp 1 0.250948648923868 1 0.0403040647506714 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752017 chr13:28752031 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_37584 0 0 1 0 2 Ribosome 1 0.500231636363223 1 0.999536727273555 hm5C_site_37095 DeepMRMD:1;iRNA_m5C:0.999536727273555 37096 chr13 28752031 28752031 1 + T G STAD 28752020 + 28752000 28752040 41 AGATCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACT AGATCCTCTAACATCACCTGCTTCATCCTTGGTTAATGACT < 41bp 1 0.107867828979762 1 0.153765916824341 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752020 chr13:28752031 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_37585 0 0 1 0 2 Ribosome 1 0.500231643919681 1 0.999536712160638 hm5C_site_37096 DeepMRMD:1;iRNA_m5C:0.999536712160638 37097 chr13 28752031 28752031 1 + T G STAD 28752023 + 28752003 28752043 41 TCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTG TCCTCTAACATCACCTGCTTCATCCTTGGTTAATGACTTTG < 41bp 1 0.101570584378885 1 0.0782935321331024 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752023 chr13:28752031 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_37586 0 0 1 0 2 Ribosome 1 0.500231643925998 1 0.999536712148004 hm5C_site_37097 DeepMRMD:1;iRNA_m5C:0.999536712148004 37098 chr13 28752031 28752031 1 + T G STAD 28752026 + 28752006 28752046 41 TCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTG TCTAACATCACCTGCTTCATCCTTGGTTAATGACTTTGGTG < 41bp 1 0.115542597231094 1 0.397342473268509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752026 chr13:28752031 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_37587 0 0 1 0 2 Ribosome 1 0.500231643920581 1 0.999536712158837 hm5C_site_37098 DeepMRMD:1;iRNA_m5C:0.999536712158837 37099 chr13 28752031 28752031 1 + T G STAD 28752027 + 28752007 28752047 41 CTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTGC CTAACATCACCTGCTTCATCCTTGGTTAATGACTTTGGTGC < 41bp 1 0.336384241709385 1 0.230702131986618 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752027 chr13:28752031 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_37588 0 0 1 0 2 Ribosome 1 0.500240384454081 1 0.999519231091838 hm5C_site_37099 DeepMRMD:1;iRNA_m5C:0.999519231091838 37100 chr13 28752031 28752031 1 + T G STAD 28752051 + 28752031 28752071 41 TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA GTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA < 41bp 1 0.596721199428219 1 0.316341042518616 experiment 0.806557601143562 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752051 chr13:28752031 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_37589 0 0 1 0 2 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_37100 DeepMRMD:1;iRNA_m5C:0.999536712157812 37101 chr17 4799503 4799503 1 + C T STAD 4799505 + 4799485 4799525 41 CAGTCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGA CAGTCCTTTGCCGACCTCTCCCACCGCCCTCTGCTGGTCGA < 41bp 1 0.0953752962531251 1 0.038821667432785 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799505 chr17:4799503 nonsynonymous SNV 0.992 3 19 hm5C_associated_SNPs_37590 0 0 1 0 1 Ribosome 1 0.500231643871213 1 0.999536712257575 hm5C_site_37101 DeepMRMD:1;iRNA_m5C:0.999536712257575 37102 chr17 4799503 4799503 1 + C T STAD 4799508 + 4799488 4799528 41 TCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGACCT TCCTTTGCCGACCTCTCCCACCGCCCTCTGCTGGTCGACCT < 41bp 1 0.167390112976126 1 0.431831687688828 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799508 chr17:4799503 nonsynonymous SNV 0.992 3 16 hm5C_associated_SNPs_37591 0 0 1 0 1 Ribosome 1 0.500231644023595 1 0.999536711952809 hm5C_site_37102 DeepMRMD:1;iRNA_m5C:0.999536711952809 37103 chr3 99897207 99897207 1 + A G STAD 99897188 + 99897168 99897208 41 AACTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAA AACTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGGA < 41bp 1 0.204633838123062 1 0.200417578220367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897188 chr3:99897207 nonsynonymous SNV 0.999 0 40 hm5C_associated_SNPs_37592 0 0 1 0 1 Ribosome 1 0.500231643935727 1 0.999536712128545 hm5C_site_37103 DeepMRMD:1;iRNA_m5C:0.999536712128545 37104 chr3 99897207 99897207 1 + A G STAD 99897190 + 99897170 99897210 41 CTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGAATC CTTCTGGAAATGGGAGTGCTCAGTCTGTGCAAGTCAGGATC < 41bp 1 0.287026897417794 1 0.194734871387482 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99897190 chr3:99897207 nonsynonymous SNV 0.999 0 38 hm5C_associated_SNPs_37593 0 0 1 0 1 Ribosome 1 0.500231644023978 1 0.999536711952045 hm5C_site_37104 DeepMRMD:1;iRNA_m5C:0.999536711952045 37105 chr11 20077454 20077454 1 + G A STAD 20077463 + 20077443 20077483 41 CTGGATGAGAAGAGCAGAACCATGAGCCGTTCAGGCTCATT CTGGATGAGAAAAGCAGAACCATGAGCCGTTCAGGCTCATT < 41bp 1 0.315203203078212 1 0.289376378059387 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74775;RNA-BisSeq;SNB19;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20077463 chr11:20077454 synonymous SNV . 0 12 hm5C_associated_SNPs_37594 0 0 0 0 1 Nucleus 1 0.500231641640253 1 0.999536716719494 hm5C_site_37105 DeepMRMD:1;iRNA_m5C:0.999536716719494 37106 chr5 17275371 17275371 1 + G A STAD 17275370 + 17275350 17275390 41 AAGAAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAA AAGAAGGGCTACAATGTGAACAACGAGAAAGCCAAGGAGAA < 41bp 1 0.497996304880379 1 0.314949661493301 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275370 chr5:17275371 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_37595 0 0 1 0 1 Nucleus 1 0.500231643921191 1 0.999536712157617 hm5C_site_37106 DeepMRMD:1;iRNA_m5C:0.999536712157617 37107 chr5 17275371 17275371 1 + G A STAD 17275381 + 17275361 17275401 41 CAATGTGAACGACGAGAAAGCCAAGGAGAAAGACAAGAAGG CAATGTGAACAACGAGAAAGCCAAGGAGAAAGACAAGAAGG < 41bp 1 0.374111086805224 1 0.465021044015884 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275381 chr5:17275371 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_37597 0 0 1 0 1 Nucleus 1 0.50023164414021 1 0.99953671171958 hm5C_site_37107 DeepMRMD:1;iRNA_m5C:0.99953671171958 Red cell distribution width 37108 chr19 50753938 50753938 1 + C T STAD 50753921 + 50753901 50753941 41 CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGCGGG CTGCGGGATCAGGCCGACTTCAGTGTTCTCCACTACGTGGG < 41bp 1 0.634233012611704 1 0.602940142154694 experiment 0.731533974776592 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753921 chr19:50753938 nonsynonymous SNV 0.976 4 38 hm5C_associated_SNPs_37598 0 0 0 0 1 cytosol 1 0.500231643967454 0.794119715690612 0.999536712065092 hm5C_site_37108 DeepMRMD:0.794119715690612;iRNA_m5C:0.999536712065092 37109 chr2 231326099 231326099 1 + A G STAD 231326090 + 231326070 231326110 41 CAAAAGTTGAGTGCCAAGCCCAAGCAAGAACTCATCATAAC CAAAAGTTGAGTGCCAAGCCCAAGCAAGAGCTCATCATAAC < 41bp 1 0.320506932423941 1 0.294684708118439 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SP100 ENSG00000067066 CDS Human protein_coding chr2:231326090 chr2:231326099 nonsynonymous SNV 0.006 0 30 hm5C_associated_SNPs_37599 0 0 0 0 1 Ribosome 1 0.500215287981408 1 0.999569424037184 hm5C_site_37109 DeepMRMD:1;iRNA_m5C:0.999569424037184 37110 chr19 30935240 30935240 1 + G A STAD 30935230 + 30935210 30935250 41 CGTTCCCGACGTGGCCCACCCGGTGCCCTCGCCCAAGCCTG CGTTCCCGACGTGGCCCACCCGGTGCCCTCACCCAAGCCTG < 41bp 1 0.681031531835808 1 0.683014929294586 experiment 0.637936936328384 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935230 chr19:30935240 synonymous SNV . 0 31 hm5C_associated_SNPs_37600 0 0 0 0 0 exosome 1 0.500231643921092 0.633970141410828 0.999536712157815 hm5C_site_37110 DeepMRMD:0.633970141410828;iRNA_m5C:0.999536712157815 37111 chr11 45924104 45924104 1 + G A STAD 45924098 + 45924078 45924118 41 GCCCCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCGAAT GCCCCGCCTGGGGGTCGGGGCCACTCACATCGAGACCGAAT < 41bp 1 0.058051844280902 1 0.0732551515102386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924098 chr11:45924104 synonymous SNV . 0 27 hm5C_associated_SNPs_37601 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643922214 1 0.999536712155571 hm5C_site_37111 DeepMRMD:1;iRNA_m5C:0.999536712155571 37112 chr11 45924104 45924104 1 + G A STAD 45924099 + 45924079 45924119 41 CCCCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCGAATC CCCCGCCTGGGGGTCGGGGCCACTCACATCGAGACCGAATC < 41bp 1 0.100366190408906 1 0.156514227390289 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924099 chr11:45924104 synonymous SNV . 0 26 hm5C_associated_SNPs_37602 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644250949 1 0.999536711498102 hm5C_site_37112 DeepMRMD:1;iRNA_m5C:0.999536711498102 37113 chr7 44806205 44806205 1 + C T STAD 44806215 + 44806195 44806235 41 CTGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCC CTGCCACAGGTGTGATGGGGCCCCCCAGCATGTCTGGAGCC < 41bp 1 0.111932309045726 1 0.104822546243668 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806215 chr7:44806205 synonymous SNV . 0 11 hm5C_associated_SNPs_37603 0 0 0 0 1 Cytosol 1 0.500231650787883 1 0.999536698424234 hm5C_site_37113 DeepMRMD:1;iRNA_m5C:0.999536698424234 37114 chr7 44806205 44806205 1 + C T STAD 44806216 + 44806196 44806236 41 TGCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCG TGCCACAGGTGTGATGGGGCCCCCCAGCATGTCTGGAGCCG < 41bp 1 0.138300120345318 1 0.160842657089233 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806216 chr7:44806205 synonymous SNV . 0 10 hm5C_associated_SNPs_37604 0 0 0 0 1 Cytosol 1 0.500231643921075 1 0.999536712157849 hm5C_site_37114 DeepMRMD:1;iRNA_m5C:0.999536712157849 37115 chr7 44806205 44806205 1 + C T STAD 44806217 + 44806197 44806237 41 GCCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGG GCCACAGGTGTGATGGGGCCCCCCAGCATGTCTGGAGCCGG < 41bp 1 0.484395396144589 1 0.221127420663834 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806217 chr7:44806205 synonymous SNV . 0 9 hm5C_associated_SNPs_37605 0 0 0 0 1 Cytosol 1 0.500231643950203 1 0.999536712099594 hm5C_site_37115 DeepMRMD:1;iRNA_m5C:0.999536712099594 37116 chr7 44806205 44806205 1 + C T STAD 44806218 + 44806198 44806238 41 CCACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGG CCACAGGTGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGG < 41bp 1 0.158773345542269 1 0.162667661905289 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806218 chr7:44806205 synonymous SNV . 0 8 hm5C_associated_SNPs_37606 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37116 DeepMRMD:1;iRNA_m5C:0.999536712157815 37117 chr7 44806205 44806205 1 + C T STAD 44806219 + 44806199 44806239 41 CACAGGCGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGGG CACAGGTGTGATGGGGCCCCCCAGCATGTCTGGAGCCGGGG < 41bp 1 0.107463541209994 1 0.489725738763809 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44806219 chr7:44806205 synonymous SNV . 0 7 hm5C_associated_SNPs_37607 0 0 0 0 1 Cytosol 1 0.50023164392133 1 0.99953671215734 hm5C_site_37117 DeepMRMD:1;iRNA_m5C:0.99953671215734 37118 chr8 142178455 142178455 1 + C T STAD 142178447 + 142178427 142178467 41 AGGCGCCGGAGCTGATGAGGCTCATCAGCGAGATCCTGGAC AGGCGCCGGAGCTGATGAGGCTCATCAGTGAGATCCTGGAC < 41bp 1 0.400620778552489 1 0.172644674777985 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142178447 chr8:142178455 synonymous SNV . 0 29 hm5C_associated_SNPs_37609 0 0 0 0 0 Nucleus 1 0.500235105989856 1 0.999529788020289 hm5C_site_37118 DeepMRMD:1;iRNA_m5C:0.999529788020289 37119 chrX 48399811 48399811 1 + C T STAD 48399810 + 48399790 48399830 41 GTGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGG GTGTTGCAGCACATCCTCATCTGAGCCTTTGATTTGAGTGG < 41bp 1 0.570260983562444 1 0.418879240751266 experiment 0.859478032875112 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399810 chrX:48399811 stopgain 1.000 0 22 hm5C_associated_SNPs_37610 0 0 0 0 3 nucleolus 1 0.500580536846318 1 0.998838926307363 hm5C_site_37119 DeepMRMD:1;iRNA_m5C:0.998838926307363 37120 chr19 41709424 41709424 1 + G A STAD 41709417 + 41709397 41709437 41 AGGCACCAAGCCTAGGGGACCGTACCCGCCTCCCTTACACC AGGCACCAAGCCTAGGGGACCGTACCCACCTCCCTTACACC < 41bp 1 0.0461849275639094 1 0.0628970563411713 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41709417 chr19:41709424 nonsynonymous SNV 0.696 0 28 hm5C_associated_SNPs_37611 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37120 DeepMRMD:1;iRNA_m5C:0.999536712157815 37121 chr15 42105236 42105236 1 + G A STAD 42105224 + 42105204 42105244 41 GGAAAAAAGGCGGACAGTACCTTCTGCATCACGTCCTCAGG GGAAAAAAGGCGGACAGTACCTTCTGCATCACATCCTCAGG < 41bp 1 0.27232889934561 1 0.0684618651866913 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42105224 chr15:42105236 synonymous SNV . 0 33 hm5C_associated_SNPs_37612 0 0 1 0 0 Endoplasmic reticulum 1 0.50022981704805 1 0.999540365903901 hm5C_site_37121 DeepMRMD:1;iRNA_m5C:0.999540365903901 37122 chr11 608437 608437 1 + G A STAD 608425 + 608405 608445 41 AGTCGTGGAGCTCAGGCCCCCTTCCCGGTCCCGCTCCACAT AGTCGTGGAGCTCAGGCCCCCTTCCCGGTCCCACTCCACAT < 41bp 1 0.141083897126362 1 0.0714127719402313 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:608425 chr11:608437 nonsynonymous SNV 0.991 1 33 hm5C_associated_SNPs_37613 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37122 DeepMRMD:1;iRNA_m5C:0.999536712157815 37123 chr11 598418 598418 1 + G A STAD 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG GTCTTCCCTGCTGGATGAAGCCATCAAGGCTGTGGCGACTG < 41bp 1 0.100167963917179 1 0.146936625242233 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598418 nonsynonymous SNV 0.053 4 26 hm5C_associated_SNPs_37614 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37123 DeepMRMD:1;iRNA_m5C:0.999536712157815 Non-melanoma skin cancer 37124 chr7 99159544 99159544 1 + G A STAD 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTCCTCAGGTGCCTGCTCTTCCCCATGAGGGAAGCC < 41bp 1 0.198647420784369 1 0.0892913043498993 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159544 nonsynonymous SNV 0.994 0 30 hm5C_associated_SNPs_37615 0 0 1 0 2 Cytosol 1 0.500231643917866 1 0.999536712164268 hm5C_site_37124 DeepMRMD:1;iRNA_m5C:0.999536712164268 37125 chrX 48759706 48759706 1 + C T STAD 48759703 + 48759683 48759723 41 GACAGGGAACGGGATCGGGACCGCGGGTATGACAAGGCAGA GACAGGGAACGGGATCGGGACCGTGGGTATGACAAGGCAGA < 41bp 1 0.288748971675202 1 0.0604234337806702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759703 chrX:48759706 synonymous SNV . 0 24 hm5C_associated_SNPs_37616 1 0 1 1 0 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_37125 DeepMRMD:1;iRNA_m5C:0.999536712157812 not specified not specified 37126 chrX 48759706 48759706 1 + C T STAD 48759720 + 48759700 48759740 41 GGACCGCGGGTATGACAAGGCAGACCGGGAAGAGGGCAAAG GGACCGTGGGTATGACAAGGCAGACCGGGAAGAGGGCAAAG < 41bp 1 0.589656423865928 1 0.139460146427155 experiment 0.820687152268145 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759720 chrX:48759706 synonymous SNV . 0 7 hm5C_associated_SNPs_37618 1 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37126 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 37127 chr6 26204976 26204976 1 + T C STAD 26204977 + 26204957 26204997 41 GGCATTACCAAGCCTGCCATCCGGCGCCTTGCTCGTCGCGG GGCATTACCAAGCCTGCCACCCGGCGCCTTGCTCGTCGCGG < 41bp 1 0.538613882376268 1 0.887305021286011 experiment 0.922772235247464 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIST1H4E ENSG00000198518 CDS Human other chr6:26204977 chr6:26204976 nonsynonymous SNV 0.008 0 20 hm5C_associated_SNPs_37619 0 0 1 0 0 Nucleus 1 0.500231643921094 0.225389957427978 0.999536712157812 hm5C_site_37127 DeepMRMD:0.225389957427978;iRNA_m5C:0.999536712157812 37128 chr10 75871828 75871828 1 + G A STAD 75871841 + 75871821 75871861 41 TGGCCGCGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG TGGCCGCAGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG < 41bp 1 0.332023357849618 1 0.121564567089081 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871841 chr10:75871828 synonymous SNV . 0 8 hm5C_associated_SNPs_37620 0 0 0 0 1 Nucleus 1 0.50023164385386 1 0.99953671229228 hm5C_site_37128 DeepMRMD:1;iRNA_m5C:0.99953671229228 37129 chr17 71232449 71232449 1 + A T STAD 71232445 + 71232425 71232465 41 TGAGACTCCAGAAAAGAACACAGAATCCCTCATTTTAAGCC TGAGACTCCAGAAAAGAACACAGATTCCCTCATTTTAAGCC < 41bp 1 0.214321714758476 1 0.11237370967865 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71232445 chr17:71232449 nonsynonymous SNV 0.078 3 25 hm5C_associated_SNPs_37623 0 0 1 0 0 chromatin 1 0.500231643921094 1 0.999536712157813 hm5C_site_37129 DeepMRMD:1;iRNA_m5C:0.999536712157813 37130 chr15 91358371 91358371 1 + A T STAD 91358367 + 91358347 91358387 41 TAGAAAGATATCTTCCAAAACGAAATCCTCCAGCATCATTG TAGAAAGATATCTTCCAAAACGAATTCCTCCAGCATCATTG < 41bp 1 0.336322649875456 1 0.0383776426315308 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91358367 chr15:91358371 nonsynonymous SNV 0.068 2 25 hm5C_associated_SNPs_37624 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37130 DeepMRMD:1;iRNA_m5C:0.999536712157815 37131 chr19 39220032 39220032 1 + A G STAD 39220041 + 39220021 39220061 41 CCTCGACTACAAGTCCTTCTCCACGGCCTTGTATGGCGAGA CCTCGACTACAGGTCCTTCTCCACGGCCTTGTATGGCGAGA < 41bp 1 0.556020494933336 1 0.442231148481369 experiment 0.887959010133327 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39220041 chr19:39220032 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_37625 0 0 1 0 0 Nucleus 1 0.50023164425345 1 0.9995367114931 hm5C_site_37131 DeepMRMD:1;iRNA_m5C:0.9995367114931 37132 chr12 109684178 109684178 1 + C T STAD 109684168 + 109684148 109684188 41 TCCCAAAATTTACGTGGCAGCCAACAGTGGCGCCCGTATTG TCCCAAAATTTACGTGGCAGCCAACAGTGGTGCCCGTATTG < 41bp 1 0.0280663218792297 1 0.436821520328522 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109684168 chr12:109684178 synonymous SNV . 0 31 hm5C_associated_SNPs_37626 0 0 0 0 1 Nucleus 1 0.500231644146009 1 0.999536711707982 hm5C_site_37132 DeepMRMD:1;iRNA_m5C:0.999536711707982 37133 chr14 21542367 21542367 1 + G A STAD 21542358 + 21542338 21542378 41 TACAAGGCATCAACAAGGACCGGCCAACAGGTCGCCTCAGT TACAAGGCATCAACAAGGACCGGCCAACAAGTCGCCTCAGT < 41bp 1 0.184229757980231 1 0.530306458473206 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21542358 chr14:21542367 nonsynonymous SNV 0.994 1 30 hm5C_associated_SNPs_37628 0 0 1 0 0 Cytosol 1 0.500231643921098 0.939387083053588 0.999536712157804 hm5C_site_37133 DeepMRMD:0.939387083053588;iRNA_m5C:0.999536712157804 37134 chr5 167826546 167826546 1 + A G STAD 167826565 + 167826545 167826585 41 AAGAGCGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT AGGAGCGTGGCTTTCAGACCCTGAAGAAGTAAGTACACCCT < 41bp 1 0.699821605110868 1 0.444326400756836 experiment 0.600356789778264 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWC1 ENSG00000113645 CDS Human protein_coding chr5:167826565 chr5:167826546 synonymous SNV . 0 2 hm5C_associated_SNPs_37629 0 0 1 0 2 Ribosome 1 0.500232116191552 1 0.999535767616896 hm5C_site_37134 DeepMRMD:1;iRNA_m5C:0.999535767616896 37135 chr15 42059287 42059287 1 + G A STAD 42059304 + 42059284 42059324 41 GATGCAGATGGTCAGAGTCTCAAGGTGATGCCTTGTTTGGC GATACAGATGGTCAGAGTCTCAAGGTGATGCCTTGTTTGGC < 41bp 1 0.421425842777817 1 0.744897961616516 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42059304 chr15:42059287 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_37630 0 0 1 0 0 Cytosol 1 0.500231640032623 0.510204076766968 0.999536719934755 hm5C_site_37135 DeepMRMD:0.510204076766968;iRNA_m5C:0.999536719934755 37136 chr20 57566121 57566121 1 + G A STAD 57566128 + 57566108 57566148 41 TGGACCCTCCTCCGGTTGAACTTGTAAGTTGCTTCTCAAGA TGGACCCTCCTCCAGTTGAACTTGTAAGTTGCTTCTCAAGA < 41bp 1 0.18300119361395 1 0.0509389936923981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NELFCD ENSG00000101158 CDS Human protein_coding chr20:57566128 chr20:57566121 synonymous SNV . 0 14 hm5C_associated_SNPs_37631 0 0 1 0 1 Ribosome 1 0.500231641512816 1 0.999536716974368 hm5C_site_37136 DeepMRMD:1;iRNA_m5C:0.999536716974368 37137 chr1 151493103 151493103 1 + C A STAD 151493121 + 151493101 151493141 41 GGCAGGGCAGGGTGAGCTTACCCGAAAAGTGGAGGAGCTAC GGAAGGGCAGGGTGAGCTTACCCGAAAAGTGGAGGAGCTAC < 41bp 1 0.686484640070554 1 0.220274567604065 experiment 0.627030719858892 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CGN ENSG00000143375 CDS Human protein_coding chr1:151493121 chr1:151493103 nonsynonymous SNV 0.025 0 3 hm5C_associated_SNPs_37632 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37137 DeepMRMD:1;iRNA_m5C:0.999536712157815 37138 chrX 56592133 56592133 1 + C T STAD 56592147 + 56592127 56592167 41 AGGAGGCGACATCAATGCAGCCATTGAAAGGCTGCTGGGCT AGGAGGTGACATCAATGCAGCCATTGAAAGGCTGCTGGGCT < 41bp 1 0.0538944178724252 1 0.102249294519424 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56592147 chrX:56592133 synonymous SNV . 0 7 hm5C_associated_SNPs_37633 0 0 1 0 0 nucleus 1 0.500231643921124 1 0.999536712157752 hm5C_site_37138 DeepMRMD:1;iRNA_m5C:0.999536712157752 37139 chr20 3802809 3802809 1 + T A STAD 3802800 + 3802780 3802820 41 CTCATTCACACCTTGAGGGCCCCGAATACTGAGGACACGGG CTCATTCACACCTTGAGGGCCCCGAATACAGAGGACACGGG < 41bp 1 0.427365753053086 1 0.0344438254833221 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3802800 chr20:3802809 synonymous SNV . 0 30 hm5C_associated_SNPs_37634 0 0 1 0 1 Ribosome 1 0.500231656869516 1 0.999536686260968 hm5C_site_37139 DeepMRMD:1;iRNA_m5C:0.999536686260968 37140 chr1 6681475 6681475 1 + C T STAD 6681488 + 6681468 6681508 41 CAGATGACGATTCCTGGGACCTCGTGACCTGCTTCTGCATG CAGATGATGATTCCTGGGACCTCGTGACCTGCTTCTGCATG < 41bp 1 0.451450769607199 1 0.0207436978816986 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681488 chr1:6681475 synonymous SNV . 0 8 hm5C_associated_SNPs_37636 0 0 1 0 1 cytosol 1 0.500231652849063 1 0.999536694301875 hm5C_site_37140 DeepMRMD:1;iRNA_m5C:0.999536694301875 37141 chr15 99673025 99673025 1 + G A STAD 99673023 + 99673003 99673043 41 GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGC GGAGCTCTCGGTGTGTCTGACCATGGTTCCTGGAGAGACGC < 41bp 1 0.154430952813723 1 0.106893628835678 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99673023 chr15:99673025 nonsynonymous SNV 0.101 0 23 hm5C_associated_SNPs_37637 0 0 1 0 1 exosome 1 0.500239258153221 1 0.999521483693558 hm5C_site_37141 DeepMRMD:1;iRNA_m5C:0.999521483693558 37142 chr15 41555004 41555004 1 + G A STAD 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCAC < 41bp 1 0.285328414018218 1 0.203609466552734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41555004 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_37638 0 0 1 0 2 Ribosome 1 0.500231739238145 1 0.99953652152371 hm5C_site_37142 DeepMRMD:1;iRNA_m5C:0.99953652152371 37143 chr1 205238752 205238752 1 + C T STAD 205238737 + 205238717 205238757 41 GGCAGTGCCACACTCGTCTCCAGCCCCAAGTATGGCAGCGA GGCAGTGCCACACTCGTCTCCAGCCCCAAGTATGGTAGCGA < 41bp 1 0.200610005349029 1 0.251325309276581 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205238737 chr1:205238752 synonymous SNV . 0 36 hm5C_associated_SNPs_37639 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37143 DeepMRMD:1;iRNA_m5C:0.999536712157815 37144 chr9 131455924 131455924 1 + C T STAD 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGATGAAACGTTCGAGTCAAACGCAGAAT < 41bp 1 0.126465372315428 1 0.104570269584656 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455924 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_37640 0 0 1 0 1 Ribosome 1 0.500231590039142 1 0.999536819921716 hm5C_site_37144 DeepMRMD:1;iRNA_m5C:0.999536819921716 37145 chr16 68104974 68104974 1 + G A STAD 68104973 + 68104953 68104993 41 TCTTCCTCAAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG TCTTCCTCAAGGAGGGTCTGCAGCCCCTGGAGGAGGTCATG < 41bp 1 0.182004838661348 1 0.250955700874329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104973 chr16:68104974 nonsynonymous SNV 0.639 0 22 hm5C_associated_SNPs_37641 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_37145 DeepMRMD:1;iRNA_m5C:0.999536712157815 37146 chr16 68104974 68104974 1 + G A STAD 68104994 + 68104974 68105014 41 GGCCCCTGGAGGAGGTCATGCAGAAATACATCAGATACGTA AGCCCCTGGAGGAGGTCATGCAGAAATACATCAGATACGTA < 41bp 1 0.576590608441207 1 0.420577049255371 experiment 0.846818783117586 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104994 chr16:68104974 nonsynonymous SNV 0.639 0 1 hm5C_associated_SNPs_37642 0 0 1 0 1 Ribosome 1 0.500227654998816 1 0.999544690002367 hm5C_site_37146 DeepMRMD:1;iRNA_m5C:0.999544690002367 37147 chr2 32824935 32824935 1 + C T STAD 32824918 + 32824898 32824938 41 TCTTGTGAATCTAGAGACAACTGGTGGTCATAGCGTGCGAT TCTTGTGAATCTAGAGACAACTGGTGGTCATAGCGTGTGAT < 41bp 1 0.204410829917492 1 0.373481869697571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824918 chr2:32824935 stopgain 0.990 1 38 hm5C_associated_SNPs_37643 0 0 1 0 1 Nucleus 1 0.500231643990691 1 0.999536712018618 hm5C_site_37147 DeepMRMD:1;iRNA_m5C:0.999536712018618 37148 chr2 32824935 32824935 1 + C T STAD 32824931 + 32824911 32824951 41 GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCT GAGACAACTGGTGGTCATAGCGTGTGATTCAATCCAAACCT < 41bp 1 0.145603027707752 1 0.594649732112885 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824931 chr2:32824935 stopgain 0.990 1 25 hm5C_associated_SNPs_37644 0 0 1 0 1 Nucleus 1 0.500231526493358 0.81070053577423 0.999536947013284 hm5C_site_37148 DeepMRMD:0.81070053577423;iRNA_m5C:0.999536947013284 37149 chr3 38524744 38524744 1 + G A STAD 38524735 + 38524715 38524755 41 GGTGTCCCTGATTCGGAGGTCGGTCAACGGCACTACCTCGG GGTGTCCCTGATTCGGAGGTCGGTCAACGACACTACCTCGG < 41bp 1 0.245169712505512 1 0.280530214309692 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38524735 chr3:38524744 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_37645 0 0 1 0 0 Ribosome 1 0.500231643850357 1 0.999536712299285 hm5C_site_37149 DeepMRMD:1;iRNA_m5C:0.999536712299285 37150 chr5 73045775 73045775 1 + C T STAD 73045760 + 73045740 73045780 41 GGATCTCATCAGCGACATGTCATGATTGCAGAGCGCATCGA GGATCTCATCAGCGACATGTCATGATTGCAGAGCGTATCGA < 41bp 1 0.671750511761893 1 0.0580762028694153 experiment 0.656498976476214 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73045760 chr5:73045775 synonymous SNV . 0 36 hm5C_associated_SNPs_37646 0 0 0 0 1 cytosol 1 0.500231657834167 1 0.999536684331667 hm5C_site_37150 DeepMRMD:1;iRNA_m5C:0.999536684331667 37151 chr7 128845210 128845210 1 + C T STAD 128845208 + 128845188 128845228 41 CAGGACATGCACAGCTACATCGCGGCCTTCGGGGCCGTCAC CAGGACATGCACAGCTACATCGTGGCCTTCGGGGCCGTCAC < 41bp 1 0.646762155991257 1 0.465783655643463 experiment 0.706475688017487 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128845208 chr7:128845210 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_37647 0 0 0 0 1 cytosol 1 0.500231639990004 1 0.999536720019991 hm5C_site_37151 DeepMRMD:1;iRNA_m5C:0.999536720019991 37152 chr1 100480939 100480939 1 + G A STAD 100480954 + 100480934 100480974 41 TCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTC TCAGGAATATAACCGACTGACCTGGATAGTAGTTGTTCTTC < 41bp 1 0.258088655471178 1 0.0523036420345306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC35A3 ENSG00000117620 CDS Human protein_coding chr1:100480954 chr1:100480939 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_37648 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921429 1 0.999536712157141 hm5C_site_37152 DeepMRMD:1;iRNA_m5C:0.999536712157141 37153 chr10 43292210 43292210 1 + T C STAD 43292225 + 43292205 43292245 41 GACGATGACCTTGAGAGGAGCTCAGCGGAAGAAGGGGAAGC GACGACGACCTTGAGAGGAGCTCAGCGGAAGAAGGGGAAGC < 41bp 1 0.349446682918025 1 0.132426857948303 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292225 chr10:43292210 synonymous SNV . 0 6 hm5C_associated_SNPs_37649 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37153 DeepMRMD:1;iRNA_m5C:0.999536712157815 37154 chr7 116199067 116199067 1 + G C STAD 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGACGGCATTTGGAAGGCCACCTTCACCACCTTCACTGT < 41bp 1 0.335607878376483 1 0.209854811429977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199067 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_37651 0 0 0 0 1 Ribosome 1 0.50010407619857 1 0.99979184760286 hm5C_site_37154 DeepMRMD:1;iRNA_m5C:0.99979184760286 37155 chr16 12618643 12618643 1 + G A STAD 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCCAAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.151470931822213 1 0.284380257129669 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618643 nonsynonymous SNV 0.819 1 5 hm5C_associated_SNPs_37652 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37155 DeepMRMD:1;iRNA_m5C:0.999536712157815 37156 chr6 87967491 87967491 1 + A G STAD 87967481 + 87967461 87967501 41 GATGGGAAATTTATCTGTAGCAGGTGTTACAGGGCTTTTAC GATGGGAAATTTATCTGTAGCAGGTGTTACGGGGCTTTTAC < 41bp 1 0.576059935005431 1 0.617671430110931 experiment 0.847880129989138 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF292 ENSG00000188994 CDS Human protein_coding chr6:87967481 chr6:87967491 nonsynonymous SNV 0.995 4 31 hm5C_associated_SNPs_37653 0 0 1 0 0 Cytosol 1 0.500231643918264 0.764657139778138 0.999536712163472 hm5C_site_37156 DeepMRMD:0.764657139778138;iRNA_m5C:0.999536712163472 37157 chr9 131105530 131105530 1 + G A STAD 131105522 + 131105502 131105542 41 TTCCTCTACTTGGGATCTGGCGGCTGGCGCTTCATCCGGGT TTCCTCTACTTGGGATCTGGCGGCTGGCACTTCATCCGGGT < 41bp 1 0.592906753746861 1 0.757473766803741 experiment 0.814186492506279 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131105522 chr9:131105530 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_37654 0 0 1 0 1 Ribosome 1 0.500231643921091 0.485052466392518 0.999536712157819 hm5C_site_37157 DeepMRMD:0.485052466392518;iRNA_m5C:0.999536712157819 37158 chr11 65403961 65403961 1 + C A STAD 65403941 + 65403921 65403961 41 GGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCC GGCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCA < 41bp 1 0.0544509815508222 1 0.189748287200928 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403941 chr11:65403961 nonsynonymous SNV 0.581 1 41 hm5C_associated_SNPs_37655 0 0 1 0 1 Ribosome 1 0.500231643924002 1 0.999536712151997 hm5C_site_37158 DeepMRMD:1;iRNA_m5C:0.999536712151997 37159 chr11 65403961 65403961 1 + C A STAD 65403942 + 65403922 65403962 41 GCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCCT GCTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCAT < 41bp 1 0.0851120541882056 1 0.289888024330139 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403942 chr11:65403961 nonsynonymous SNV 0.581 1 40 hm5C_associated_SNPs_37656 0 0 1 0 1 Ribosome 1 0.500231642775512 1 0.999536714448976 hm5C_site_37159 DeepMRMD:1;iRNA_m5C:0.999536714448976 37160 chr11 65403961 65403961 1 + C A STAD 65403943 + 65403923 65403963 41 CTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCCTC CTCTGGTGATGGGCGGCCCCCACCTCTGCTGCAGTGGCATC < 41bp 1 0.270269616780279 1 0.26461723446846 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403943 chr11:65403961 nonsynonymous SNV 0.581 1 39 hm5C_associated_SNPs_37657 0 0 1 0 1 Ribosome 1 0.500231643924246 1 0.999536712151508 hm5C_site_37160 DeepMRMD:1;iRNA_m5C:0.999536712151508 37161 chr20 33764042 33764042 1 + G A STAD 33764041 + 33764021 33764061 41 TCTAGAGCCCATGTCTTCTTCGAAGTGGCTGTGAATGGGAG TCTAGAGCCCATGTCTTCTTCAAAGTGGCTGTGAATGGGAG < 41bp 1 0.64522607796603 1 0.637850701808929 experiment 0.709547844067941 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PROCR ENSG00000101000 CDS Human protein_coding chr20:33764041 chr20:33764042 nonsynonymous SNV 0.977 1 22 hm5C_associated_SNPs_37658 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645379095 0.724298596382142 0.99953670924181 hm5C_site_37161 DeepMRMD:0.724298596382142;iRNA_m5C:0.99953670924181 37162 chr3 126741039 126741039 1 + C T STAD 126741032 + 126741012 126741052 41 CTGGAGGCACAGCGCAGCTTCTCCATGCGCGACCGCGGGAA CTGGAGGCACAGCGCAGCTTCTCCATGTGCGACCGCGGGAA < 41bp 1 0.664524294191744 1 0.947013020515442 experiment 0.670951411616512 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126741032 chr3:126741039 nonsynonymous SNV 0.980 4 28 hm5C_associated_SNPs_37659 0 0 1 0 0 Ribosome 1 0.50023332353823 0.105973958969116 0.99953335292354 hm5C_site_37162 DeepMRMD:0.105973958969116;iRNA_m5C:0.99953335292354 37163 chr10 105184857 105184857 1 + C T STAD 105184840 + 105184820 105184860 41 GCCACCTGGCAGCTTTCTCCCTGACCTCTCACCTCAACGAC GCCACCTGGCAGCTTTCTCCCTGACCTCTCACCTCAATGAC < 41bp 1 0.258365059641087 1 0.085715264081955 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105184840 chr10:105184857 synonymous SNV . 0 38 hm5C_associated_SNPs_37660 0 0 1 0 0 Nucleus 1 0.500231643919986 1 0.999536712160028 hm5C_site_37163 DeepMRMD:1;iRNA_m5C:0.999536712160028 37164 chr19 13051174 13051174 1 + C T STAD 13051158 + 13051138 13051178 41 GAGTCCGGCTCCTTGGAAGACGATTGGGACTTCCTGCCACC GAGTCCGGCTCCTTGGAAGACGATTGGGACTTCCTGTCACC < 41bp 1 0.311563795276692 1 0.457036256790161 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051158 chr19:13051174 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_37661 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37164 DeepMRMD:1;iRNA_m5C:0.999536712157815 37165 chr19 13051174 13051174 1 + C T STAD 13051171 + 13051151 13051191 41 TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAG TGGAAGACGATTGGGACTTCCTGTCACCCAAGAAGATAAAG < 41bp 1 0.179932891306239 1 0.0987732112407684 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051171 chr19:13051174 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_37662 0 0 1 0 1 Ribosome 1 0.500231643448485 1 0.999536713103029 hm5C_site_37165 DeepMRMD:1;iRNA_m5C:0.999536713103029 37166 chr19 13051174 13051174 1 + C T STAD 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTCCTGTCACCCAAGAAGATAAAGGATC < 41bp 1 0.427609259106802 1 0.0877532362937927 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051174 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_37663 0 0 1 0 1 Ribosome 1 0.500231574611272 1 0.999536850777457 hm5C_site_37166 DeepMRMD:1;iRNA_m5C:0.999536850777457 37167 chr18 55996250 55996250 1 + A T STAD 55996248 + 55996228 55996268 41 GACGTGTCCTCGGAGTCGGACAATAACATCAGACAGATCAA GACGTGTCCTCGGAGTCGGACATTAACATCAGACAGATCAA < 41bp 1 0.149082460262604 1 0.0777093768119812 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:55996248 chr18:55996250 nonsynonymous SNV 0.932 2 23 hm5C_associated_SNPs_37664 0 0 1 0 1 Cytosol 1 0.500232613034582 1 0.999534773930836 hm5C_site_37167 DeepMRMD:1;iRNA_m5C:0.999534773930836 37168 chr9 109689819 109689819 1 + T C STAD 109689820 + 109689800 109689840 41 CGGACGGTCAAAGGGGTACTCATTCATTATCAGAAGAAGCA CGGACGGTCAAAGGGGTACCCATTCATTATCAGAAGAAGCA < 41bp 1 0.0210362756811077 1 0.132732182741165 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109689820 chr9:109689819 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_37665 0 0 1 0 0 exosome 1 0.500231643923072 1 0.999536712153856 hm5C_site_37168 DeepMRMD:1;iRNA_m5C:0.999536712153856 37169 chr6 32123549 32123549 1 + G A STAD 32123537 + 32123517 32123557 41 TTCTTTCATCTCCCTCTCCTCTCCACAGATGGGACAGTATG TTCTTTCATCTCCCTCTCCTCTCCACAGATGGAACAGTATG < 41bp 1 0.649250969325992 1 0.95546692609787 experiment 0.701498061348016 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control PPT2 ENSG00000221988;ENSG00000258388 CDS Human other chr6:32123537 chr6:32123549 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_37666 0 0 1 1 2 chromatin 1 0.500231643922264 0.08906614780426 0.999536712155471 hm5C_site_37169 DeepMRMD:0.08906614780426;iRNA_m5C:0.999536712155471 37170 chr12 122079120 122079120 1 + G A STAD 122079102 + 122079082 122079122 41 AACATCGAGGCGGTGAGCAACGTGCACAATCTCAACTCGGT AACATCGAGGCGGTGAGCAACGTGCACAATCTCAACTCAGT < 41bp 1 0.141758857024241 1 0.118757039308548 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ORAI1 ENSG00000182500 CDS Human other chr12:122079102 chr12:122079120 synonymous SNV . 0 39 hm5C_associated_SNPs_37667 0 0 1 0 0 Endoplasmic reticulum 1 0.500231996206128 1 0.999536007587744 hm5C_site_37170 DeepMRMD:1;iRNA_m5C:0.999536007587744 37171 chr5 52204835 52204835 1 + G T STAD 52204817 + 52204797 52204837 41 CTAGTCGGAGCCCCTATGTACATGGGAACAGAGAAGGAGGA CTAGTCGGAGCCCCTATGTACATGGGAACAGAGAAGGATGA < 41bp 1 0.363072350902905 1 0.328538596630096 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52204817 chr5:52204835 nonsynonymous SNV 0.990 1 39 hm5C_associated_SNPs_37668 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37171 DeepMRMD:1;iRNA_m5C:0.999536712157815 37172 chr17 54912541 54912541 1 + C T STAD 54912549 + 54912529 54912569 41 CACCACTGGATCCGGGGCAACGTGCCCCTGTGCAGTTACTG CACCACTGGATCTGGGGCAACGTGCCCCTGTGCAGTTACTG < 41bp 1 0.311226883832393 1 0.176509767770767 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKE ENSG00000153933 CDS Human protein_coding chr17:54912549 chr17:54912541 nonsynonymous SNV 0.990 5 13 hm5C_associated_SNPs_37669 0 0 1 0 1 Ribosome 1 0.500234582076969 1 0.999530835846062 hm5C_site_37172 DeepMRMD:1;iRNA_m5C:0.999530835846062 37173 chr19 49619588 49619588 1 + G A STAD 49619603 + 49619583 49619623 41 AAGACGGATGAGGGCCTAGGCTTCAACATCATGGGTGGCAA AAGACAGATGAGGGCCTAGGCTTCAACATCATGGGTGGCAA < 41bp 1 0.683297512575618 1 0.706752121448517 experiment 0.633404974848764 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LIN7B ENSG00000104863 CDS Human protein_coding chr19:49619603 chr19:49619588 synonymous SNV . 0 6 hm5C_associated_SNPs_37670 0 0 0 0 1 nucleoplasm 1 0.500231643915243 0.586495757102966 0.999536712169514 hm5C_site_37173 DeepMRMD:0.586495757102966;iRNA_m5C:0.999536712169514 37174 chr6 168314926 168314926 1 + C T STAD 168314938 + 168314918 168314958 41 AGCAAGACCGAGACCTTAGTCGGATCACACTGGATGCTCAA AGCAAGACTGAGACCTTAGTCGGATCACACTGGATGCTCAA < 41bp 1 0.374784937491144 1 0.872965693473816 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168314938 chr6:168314926 stopgain 1.000 1 9 hm5C_associated_SNPs_37671 0 0 1 0 2 unknown 1 0.500231573620438 0.254068613052368 0.999536852759124 hm5C_site_37174 DeepMRMD:0.254068613052368;iRNA_m5C:0.999536852759124 37175 chr8 133856424 133856424 1 + A G STAD 133856405 + 133856385 133856425 41 TGGTCCTTTGGAGAAGAATCCAGCTGAAGGGAATACAGTAT TGGTCCTTTGGAGAAGAATCCAGCTGAAGGGAATACAGTGT < 41bp 1 0.349928520490105 1 0.28902330994606 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133856405 chr8:133856424 synonymous SNV . 0 40 hm5C_associated_SNPs_37672 0 0 0 0 1 Nucleus 1 0.500231643792276 1 0.999536712415449 hm5C_site_37175 DeepMRMD:1;iRNA_m5C:0.999536712415449 37176 chr12 107237697 107237697 1 + G A STAD 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCAAAACATCCGAAAATTTCTCAAAGA < 41bp 1 0.188073396050033 1 0.28300803899765 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237697 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_37673 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37176 DeepMRMD:1;iRNA_m5C:0.999536712157815 37177 chr8 28574283 28574283 1 + G A STAD 28574271 + 28574251 28574291 41 CGTTTATGTTACAGAAAATGCAGACATCGCCTGCCTTTACG CGTTTATGTTACAGAAAATGCAGACATCGCCTACCTTTACG < 41bp 1 0.193054050385351 1 0.0856279730796814 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28574271 chr8:28574283 nonsynonymous SNV 0.976 5 33 hm5C_associated_SNPs_37674 0 0 1 0 0 Endoplasmic reticulum 1 0.500231702277364 1 0.999536595445272 hm5C_site_37177 DeepMRMD:1;iRNA_m5C:0.999536595445272 37178 chr12 109604785 109604785 1 + G A STAD 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCACACGCTTTGGGGGGGATCAGGTCATCGAGAAGGTACAG < 41bp 1 0.488681972221899 1 0.61039537191391 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604785 nonsynonymous SNV 0.965 0 22 hm5C_associated_SNPs_37675 0 0 1 0 1 Nucleus 1 0.50023164392097 0.77920925617218 0.999536712158059 hm5C_site_37178 DeepMRMD:0.77920925617218;iRNA_m5C:0.999536712158059 37179 chr16 90001516 90001516 1 + G A STAD 90001517 + 90001497 90001537 41 GCACCCTCAAGCTGGCCACGCCCACCTACGGGGACCTCAAC GCACCCTCAAGCTGGCCACACCCACCTACGGGGACCTCAAC < 41bp 1 0.0880624399285881 1 0.0415643155574799 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TUBB3 ENSG00000198211;ENSG00000258947 CDS Human other chr16:90001517 chr16:90001516 synonymous SNV . 0 20 hm5C_associated_SNPs_37676 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37179 DeepMRMD:1;iRNA_m5C:0.999536712157815 37180 chr8 22064992 22064992 1 + G A STAD 22065011 + 22064991 22065031 41 CGGTCCAGCGAAAGGGCTTCCAGGCCTCCCACGCCACAGGT CAGTCCAGCGAAAGGGCTTCCAGGCCTCCCACGCCACAGGT < 41bp 1 0.52717954035143 1 0.802735567092896 experiment 0.94564091929714 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22065011 chr8:22064992 synonymous SNV . 0 2 hm5C_associated_SNPs_37678 0 0 0 0 1 Endoplasmic reticulum 1 0.500231634560818 0.394528865814208 0.999536730878363 hm5C_site_37180 DeepMRMD:0.394528865814208;iRNA_m5C:0.999536730878363 37181 chr15 42052726 42052726 1 + G A STAD 42052715 + 42052695 42052735 41 TCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGT TCCAAGGTTTCCAAAAGTCTCATTCTTACTCAAGTAAGTGT < 41bp 1 0.0214967670715626 1 0.0461910665035248 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42052715 chr15:42052726 nonsynonymous SNV 0.996 1 32 hm5C_associated_SNPs_37679 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37181 DeepMRMD:1;iRNA_m5C:0.999536712157815 37182 chr15 41859622 41859622 1 + G A STAD 41859602 + 41859582 41859622 41 GAAGTCCTGGCTGTTGTGGTCCCTGTGCCCCCCTTTACCTG GAAGTCCTGGCTGTTGTGGTCCCTGTGCCCCCCTTTACCTA < 41bp 1 0.250383644518798 1 0.0302310883998871 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41859602 chr15:41859622 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_37680 0 0 1 0 1 Ribosome 1 0.500231654225796 1 0.999536691548408 hm5C_site_37182 DeepMRMD:1;iRNA_m5C:0.999536691548408 37183 chr19 39220045 39220045 1 + G A STAD 39220041 + 39220021 39220061 41 CCTCGACTACAAGTCCTTCTCCACGGCCTTGTATGGCGAGA CCTCGACTACAAGTCCTTCTCCACAGCCTTGTATGGCGAGA < 41bp 1 0.628606088581612 1 0.227445214986801 experiment 0.742787822836775 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39220041 chr19:39220045 synonymous SNV . 0 25 hm5C_associated_SNPs_37681 0 0 1 0 0 Nucleus 1 0.500231643962048 1 0.999536712075904 hm5C_site_37183 DeepMRMD:1;iRNA_m5C:0.999536712075904 37184 chr12 56622933 56622933 1 + C T STAD 56622945 + 56622925 56622965 41 TGCAGGCCCGCCTGGCCCTTCCAGCAACCCTGTTAGTAACG TGCAGGCCTGCCTGGCCCTTCCAGCAACCCTGTTAGTAACG < 41bp 1 0.247921908783625 1 0.308130621910095 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NABP2 ENSG00000139579 CDS Human protein_coding chr12:56622945 chr12:56622933 nonsynonymous SNV 0.992 2 9 hm5C_associated_SNPs_37682 0 0 1 0 0 Ribosome 1 0.500231643907172 1 0.999536712185656 hm5C_site_37184 DeepMRMD:1;iRNA_m5C:0.999536712185656 37185 chr17 18061119 18061119 1 + C T STAD 18061139 + 18061119 18061159 41 CAGCTGCCAACGGAGCCAGGCCGCGGCCGAGCAGCCGCCGT TAGCTGCCAACGGAGCCAGGCCGCGGCCGAGCAGCCGCCGT < 41bp 1 0.219305561280174 1 0.179861426353455 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MYO15A ENSG00000091536 CDS Human protein_coding chr17:18061139 chr17:18061119 stopgain 0.436 0 1 hm5C_associated_SNPs_37683 0 0 0 0 1 chromatin 1 0.500231637279247 1 0.999536725441506 hm5C_site_37185 DeepMRMD:1;iRNA_m5C:0.999536725441506 37186 chr21 47831466 47831466 1 + G A STAD 47831456 + 47831436 47831476 41 CTGGAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGC CTGGAGGCCCTGCAGCAGCGCCTCCAGGGCACAGAGGAGGC < 41bp 1 0.0167577802824456 1 0.144536226987839 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831456 chr21:47831466 nonsynonymous SNV 0.011 0 31 hm5C_associated_SNPs_37684 0 0 1 0 0 Exosome 1 0.50023164392108 1 0.999536712157839 hm5C_site_37186 DeepMRMD:1;iRNA_m5C:0.999536712157839 37187 chr21 47831466 47831466 1 + G A STAD 47831457 + 47831437 47831477 41 TGGAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCT TGGAGGCCCTGCAGCAGCGCCTCCAGGGCACAGAGGAGGCT < 41bp 1 0.309298689647303 1 0.918036460876465 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831457 chr21:47831466 nonsynonymous SNV 0.011 0 30 hm5C_associated_SNPs_37685 0 0 1 0 0 Exosome 1 0.500231661033085 0.16392707824707 0.999536677933829 hm5C_site_37187 DeepMRMD:0.16392707824707;iRNA_m5C:0.999536677933829 37188 chr21 47831466 47831466 1 + G A STAD 47831459 + 47831439 47831479 41 GAGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGC GAGGCCCTGCAGCAGCGCCTCCAGGGCACAGAGGAGGCTGC < 41bp 1 0.210394106266328 1 0.574821770191193 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831459 chr21:47831466 nonsynonymous SNV 0.011 0 28 hm5C_associated_SNPs_37686 0 0 1 0 0 Exosome 1 0.500231643921089 0.850356459617614 0.999536712157822 hm5C_site_37188 DeepMRMD:0.850356459617614;iRNA_m5C:0.999536712157822 37189 chr21 47831466 47831466 1 + G A STAD 47831460 + 47831440 47831480 41 AGGCCCTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCG AGGCCCTGCAGCAGCGCCTCCAGGGCACAGAGGAGGCTGCG < 41bp 1 0.417817585132125 1 0.883466780185699 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831460 chr21:47831466 nonsynonymous SNV 0.011 0 27 hm5C_associated_SNPs_37687 0 0 1 0 0 Exosome 1 0.500231643921132 0.233066439628602 0.999536712157736 hm5C_site_37189 DeepMRMD:0.233066439628602;iRNA_m5C:0.999536712157736 37190 chr21 47831466 47831466 1 + G A STAD 47831465 + 47831445 47831485 41 CTGCAGCAGCGCCTCCAGGGCGCAGAGGAGGCTGCGGAGCT CTGCAGCAGCGCCTCCAGGGCACAGAGGAGGCTGCGGAGCT < 41bp 1 0.227793049924514 1 0.362617582082748 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47831465 chr21:47831466 nonsynonymous SNV 0.011 0 22 hm5C_associated_SNPs_37688 0 0 1 0 0 Exosome 1 0.500231643929101 1 0.999536712141797 hm5C_site_37190 DeepMRMD:1;iRNA_m5C:0.999536712141797 37191 chr22 32275660 32275660 1 + C T STAD 32275664 + 32275644 32275684 41 GCCCTGGCTGCCTAGCCGGCCAGCCTCCTATGCAAGTAGGC GCCCTGGCTGCCTAGCTGGCCAGCCTCCTATGCAAGTAGGC < 41bp 1 0.306277543254424 1 0.0641768276691437 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32275664 chr22:32275660 nonsynonymous SNV 0.980 3 17 hm5C_associated_SNPs_37689 0 0 0 2 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_37191 DeepMRMD:1;iRNA_m5C:0.999536712157816 37192 chr3 52326884 52326884 1 + G A STAD 52326903 + 52326883 52326923 41 CGCTGGGGCCGATAGATGTGCTGTTTTTGAGCGGTGGCACC CACTGGGGCCGATAGATGTGCTGTTTTTGAGCGGTGGCACC < 41bp 1 0.266771473514236 1 0.161768853664398 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52326903 chr3:52326884 synonymous SNV . 0 2 hm5C_associated_SNPs_37690 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37192 DeepMRMD:1;iRNA_m5C:0.999536712157815 37193 chr19 10940880 10940880 1 + G T STAD 10940869 + 10940849 10940889 41 CGGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCT CGGCCCCCAGCAGTGAGGGGCCCCACTCCAGTGCCCCCCCT < 41bp 1 0.250178193316559 1 0.143673956394196 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940869 chr19:10940880 nonsynonymous SNV 0.916 5 32 hm5C_associated_SNPs_37692 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37193 DeepMRMD:1;iRNA_m5C:0.999536712157815 37194 chr19 10940880 10940880 1 + G T STAD 10940870 + 10940850 10940890 41 GGCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTG GGCCCCCAGCAGTGAGGGGCCCCACTCCAGTGCCCCCCCTG < 41bp 1 0.156410406726121 1 0.0557902455329895 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940870 chr19:10940880 nonsynonymous SNV 0.916 5 31 hm5C_associated_SNPs_37693 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37194 DeepMRMD:1;iRNA_m5C:0.999536712157815 37195 chr19 10940880 10940880 1 + G T STAD 10940871 + 10940851 10940891 41 GCCCCCAGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTGA GCCCCCAGCAGTGAGGGGCCCCACTCCAGTGCCCCCCCTGA < 41bp 1 0.114164658920515 1 0.108185350894928 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940871 chr19:10940880 nonsynonymous SNV 0.916 5 30 hm5C_associated_SNPs_37694 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37195 DeepMRMD:1;iRNA_m5C:0.999536712157815 37196 chr19 10940880 10940880 1 + G T STAD 10940900 + 10940880 10940920 41 GGCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCC TGCCCCCCCTGATTCCTGTTCCCGTGGGGGCAGCAGCCTCC < 41bp 1 0.362905347717881 1 0.147898763418198 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940900 chr19:10940880 nonsynonymous SNV 0.916 5 1 hm5C_associated_SNPs_37695 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_37196 DeepMRMD:1;iRNA_m5C:0.999536712157815 37197 chr11 71502820 71502820 1 + G A STAD 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCATCAGTCAAGTAT < 41bp 1 0.18220388530492 1 0.4211286008358 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502820 synonymous SNV . 0 29 hm5C_associated_SNPs_37696 0 0 0 0 3 Ribosome 1 0.500231661625416 1 0.999536676749168 hm5C_site_37197 DeepMRMD:1;iRNA_m5C:0.999536676749168 37198 chr7 44099178 44099178 1 + C T STAD 44099175 + 44099155 44099195 41 GGAGCCGGCGCCCAGCACTCCTCCATGTCTGGTGCAGGCAG GGAGCCGGCGCCCAGCACTCCTCTATGTCTGGTGCAGGCAG < 41bp 1 0.569515130944004 1 0.938760638237 experiment 0.860969738111992 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44099175 chr7:44099178 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_37697 0 0 1 0 2 Ribosome 1 0.500231643921091 0.122478723526 0.999536712157818 hm5C_site_37198 DeepMRMD:0.122478723526;iRNA_m5C:0.999536712157818 37199 chr20 23350290 23350290 1 + G A STAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCCTCCAGCGCCACCACCGCATCCA < 41bp 1 0.464088403845238 1 0.50152325630188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350290 nonsynonymous SNV 0.979 0 32 hm5C_associated_SNPs_37698 0 0 0 0 2 Cytosol 1 0.500231643920873 0.99695348739624 0.999536712158254 hm5C_site_37199 DeepMRMD:0.99695348739624;iRNA_m5C:0.999536712158254 37200 chr20 62373333 62373333 1 + C T STAD 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GACCTGGCCAGTGACCAGTCCTCTCTGTCCACCCCGTCACC < 41bp 1 0.105908762937232 1 0.0575765073299408 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373333 nonsynonymous SNV 0.719 2 26 hm5C_associated_SNPs_37699 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37200 DeepMRMD:1;iRNA_m5C:0.999536712157815 37201 chr11 400009 400009 1 + G A STAD 399996 + 399976 400016 41 GGAACCTTTCATCCAGCGACCACCTGAAGGACCGCCTGGCC GGAACCTTTCATCCAGCGACCACCTGAAGGACCACCTGGCC < 41bp 1 0.278776651695235 1 0.24642476439476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PKP3 ENSG00000184363 CDS Human protein_coding chr11:399996 chr11:400009 nonsynonymous SNV 0.995 1 34 hm5C_associated_SNPs_37700 0 0 1 0 1 Ribosome 1 0.500231643921087 1 0.999536712157827 hm5C_site_37201 DeepMRMD:1;iRNA_m5C:0.999536712157827 37202 chr1 46743801 46743801 1 + T C STAD 46743784 + 46743764 46743804 41 TCAACAGCCGTCAGATCCGGCCACCCCCTGATGGTTCTGAC TCAACAGCCGTCAGATCCGGCCACCCCCTGATGGTTCCGAC < 41bp 1 0.0715305530825029 1 0.22381055355072 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46743784 chr1:46743801 synonymous SNV . 0 38 hm5C_associated_SNPs_37701 0 0 1 0 1 Ribosome 1 0.500232228704745 1 0.999535542590511 hm5C_site_37202 DeepMRMD:1;iRNA_m5C:0.999535542590511 37203 chr4 123748453 123748453 1 + C T STAD 123748458 + 123748438 123748478 41 GGGGGCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGA GGGGGCTTCTTCCTGTGCATCCACCCCGACGGCCGAGTTGA < 41bp 1 0.153939607566275 1 0.0626850128173828 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748458 chr4:123748453 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_37702 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37203 DeepMRMD:1;iRNA_m5C:0.999536712157815 37204 chr16 2811591 2811591 1 + G A STAD 2811603 + 2811583 2811623 41 CCCTCTCCGGAAAGGAGCAGCACAGGCCCAGAACCACCTGC CCCTCTCCAGAAAGGAGCAGCACAGGCCCAGAACCACCTGC < 41bp 1 0.343422687479642 1 0.518993735313416 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2811603 chr16:2811591 synonymous SNV . 0 9 hm5C_associated_SNPs_37704 0 0 1 0 1 Nucleus 1 0.500231643921092 0.962012529373168 0.999536712157815 hm5C_site_37204 DeepMRMD:0.962012529373168;iRNA_m5C:0.999536712157815 37205 chr11 82878523 82878523 1 + C T STAD 82878517 + 82878497 82878537 41 ACTTCCTTGTTGTTGTGCATCAAATTCGACAGCTATTTCAG ACTTCCTTGTTGTTGTGCATCAAATTTGACAGCTATTTCAG < 41bp 1 0.394183062841016 1 0.448924571275711 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCF11 ENSG00000165494 CDS Human protein_coding chr11:82878517 chr11:82878523 stopgain 1.000 1 27 hm5C_associated_SNPs_37705 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37205 DeepMRMD:1;iRNA_m5C:0.999536712157815 37206 chr9 129458222 129458222 1 + G A STAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGGCAGCAGCAACCCCTTCCAGCAGGG < 41bp 1 0.683209999452642 1 0.433235287666321 experiment 0.633580001094715 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458222 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_37706 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392109 1 0.99953671215782 hm5C_site_37206 DeepMRMD:1;iRNA_m5C:0.99953671215782 37207 chr22 20079078 20079078 1 + C T STAD 20079093 + 20079073 20079113 41 GCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA GCAGGTGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA < 41bp 1 0.0654864034565069 1 0.130122065544128 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20079093 chr22:20079078 nonsynonymous SNV 0.946 3 6 hm5C_associated_SNPs_37708 0 0 1 0 1 Nucleus 1 0.50023164082374 1 0.999536718352519 hm5C_site_37207 DeepMRMD:1;iRNA_m5C:0.999536718352519 37208 chr1 24996743 24996743 1 + C A STAD 24996751 + 24996731 24996771 41 ACCGTCTACAAACTGGTCACCAGCTGTACCGGTCAAAAAGG ACCGTCTACAAAATGGTCACCAGCTGTACCGGTCAAAAAGG < 41bp 1 0.500498931774476 1 0.454510986804962 experiment 0.999002136451047 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996751 chr1:24996743 nonsynonymous SNV 0.998 1 13 hm5C_associated_SNPs_37709 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_37208 DeepMRMD:1;iRNA_m5C:0.999536712157815 37209 chr1 55457702 55457702 1 + G A STAD 55457683 + 55457663 55457703 41 CCACCCAGCTATGAGAGCATCAGCCTTGCTCTTGATGCCGT CCACCCAGCTATGAGAGCATCAGCCTTGCTCTTGATGCCAT < 41bp 1 0.587788468093374 1 0.228706568479538 experiment 0.824423063813252 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55457683 chr1:55457702 nonsynonymous SNV 0.000 0 40 hm5C_associated_SNPs_37710 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37209 DeepMRMD:1;iRNA_m5C:0.999536712157815 37210 chr10 123845412 123845412 1 + G A STAD 123845420 + 123845400 123845440 41 GCTGCTGAGACTGGTGGCAGCGCTGGTGCAGGAGACCCAGG GCTGCTGAGACTAGTGGCAGCGCTGGTGCAGGAGACCCAGG < 41bp 1 0.314453488128541 1 0.765031337738037 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TACC2 ENSG00000138162 CDS Human protein_coding chr10:123845420 chr10:123845412 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_37711 0 0 1 0 0 Cytoplasm 1 0.500231649858922 0.469937324523926 0.999536700282155 hm5C_site_37210 DeepMRMD:0.469937324523926;iRNA_m5C:0.999536700282155 37211 chr6 32945673 32945673 1 + C G STAD 32945671 + 32945651 32945691 41 GAGGAAAGTAGCAGTGAGAGCTCCTCTGAGGAAGAGGAGGA GAGGAAAGTAGCAGTGAGAGCTGCTCTGAGGAAGAGGAGGA < 41bp 1 0.46865703260639 1 0.262925267219543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32945671 chr6:32945673 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_37712 0 0 1 0 0 Cytosol 1 0.500231643921238 1 0.999536712157523 hm5C_site_37211 DeepMRMD:1;iRNA_m5C:0.999536712157523 37212 chr11 125475553 125475553 1 + T C STAD 125475549 + 125475529 125475569 41 GCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA GCCATCTTTTGCATGCTACTCACCCACTACATGTGGATCAA < 41bp 1 0.523027641322682 1 0.285672307014465 experiment 0.953944717354635 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125475549 chr11:125475553 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_37714 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643457188 1 0.999536713085624 hm5C_site_37212 DeepMRMD:1;iRNA_m5C:0.999536713085624 37213 chr17 7339931 7339931 1 + T C STAD 7339946 + 7339926 7339966 41 CCTAGTGACGTTTCAGCGTCCGAGTCGCCTCAGCATGACGT CCTAGCGACGTTTCAGCGTCCGAGTCGCCTCAGCATGACGT < 41bp 1 0.371607549873582 1 0.491639167070389 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM102 ENSG00000181284 CDS Human protein_coding chr17:7339946 chr17:7339931 synonymous SNV . 0 6 hm5C_associated_SNPs_37715 0 0 0 0 0 exosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_37213 DeepMRMD:1;iRNA_m5C:0.999536712157811 37214 chr13 42773797 42773797 1 + A G STAD 42773796 + 42773776 42773816 41 TTAATAATAAAAGAGAGGAGCACCCTGAAAAATGCAGGTAA TTAATAATAAAAGAGAGGAGCGCCCTGAAAAATGCAGGTAA < 41bp 1 0.125962278669713 1 0.272104829549789 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKH ENSG00000102780 CDS Human protein_coding chr13:42773796 chr13:42773797 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_37716 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37214 DeepMRMD:1;iRNA_m5C:0.999536712157815 37215 chr13 42773797 42773797 1 + A G STAD 42773800 + 42773780 42773820 41 TAATAAAAGAGAGGAGCACCCTGAAAAATGCAGGTAATTTT TAATAAAAGAGAGGAGCGCCCTGAAAAATGCAGGTAATTTT < 41bp 1 0.363114467673253 1 0.425588697195053 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKH ENSG00000102780 CDS Human protein_coding chr13:42773800 chr13:42773797 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_37717 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37215 DeepMRMD:1;iRNA_m5C:0.999536712157815 37216 chr14 102455091 102455091 1 + C T STAD 102455097 + 102455077 102455117 41 TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAAGAT TGAGAGCTTGGACGTAGGTTCTTCTTGGACAAGCTGAAGAT < 41bp 1 0.0675295445606351 1 0.0880788564682007 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102455097 chr14:102455091 stopgain 0.992 1 15 hm5C_associated_SNPs_37718 0 0 1 0 2 Cytosol 1 0.500231557467996 1 0.999536885064009 hm5C_site_37216 DeepMRMD:1;iRNA_m5C:0.999536885064009 37217 chr8 144332268 144332268 1 + A C STAD 144332280 + 144332260 144332300 41 AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCGGATCTT AGGAAGAACCCCTATGAGTGCAGTGAGTGTGGGCGGATCTT < 41bp 1 0.232019752568257 1 0.345592528581619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP41 ENSG00000181638;ENSG00000264668 CDS Human other chr8:144332280 chr8:144332268 nonsynonymous SNV 0.913 1 9 hm5C_associated_SNPs_37720 0 0 1 0 0 chromatin 1 0.500231643923367 1 0.999536712153266 hm5C_site_37217 DeepMRMD:1;iRNA_m5C:0.999536712153266 37218 chr1 171510625 171510625 1 + G A STAD 171510626 + 171510606 171510646 41 GCTTTCTTCCTAAAGGAGAGCCTACAAGGAGAGGCAGAGGG GCTTTCTTCCTAAAGGAGAACCTACAAGGAGAGGCAGAGGG < 41bp 1 0.0183703296336113 1 0.299450695514679 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171510626 chr1:171510625 synonymous SNV . 0 20 hm5C_associated_SNPs_37721 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37218 DeepMRMD:1;iRNA_m5C:0.999536712157815 37219 chr1 171510625 171510625 1 + G A STAD 171510627 + 171510607 171510647 41 CTTTCTTCCTAAAGGAGAGCCTACAAGGAGAGGCAGAGGGG CTTTCTTCCTAAAGGAGAACCTACAAGGAGAGGCAGAGGGG < 41bp 1 0.46921466775927 1 0.682431280612946 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171510627 chr1:171510625 synonymous SNV . 0 19 hm5C_associated_SNPs_37722 0 0 1 0 0 Cytosol 1 0.500231643921092 0.635137438774108 0.999536712157815 hm5C_site_37219 DeepMRMD:0.635137438774108;iRNA_m5C:0.999536712157815 37220 chr6 31928236 31928236 1 + G A STAD 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTCGACTACAACCTCCTTG < 41bp 1 0.352216817324878 1 0.140598982572556 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928236 nonsynonymous SNV 0.766 4 27 hm5C_associated_SNPs_37723 0 0 0 0 2 chromatin 1 0.500231644560465 1 0.99953671087907 hm5C_site_37220 DeepMRMD:1;iRNA_m5C:0.99953671087907 37221 chr16 2569560 2569560 1 + C T STAD 2569545 + 2569525 2569565 41 TCTCTTCTCGCCCCCAGGAGCTTCCTCCAGCTGGGCGCCGG TCTCTTCTCGCCCCCAGGAGCTTCCTCCAGCTGGGTGCCGG < 41bp 1 0.207923420113398 1 0.0287701487541199 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569545 chr16:2569560 synonymous SNV . 0 36 hm5C_associated_SNPs_37724 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_37221 DeepMRMD:1;iRNA_m5C:0.999536712157815 37222 chr16 2569560 2569560 1 + C T STAD 2569563 + 2569543 2569583 41 AGCTTCCTCCAGCTGGGCGCCGGCCTGAGCGTGGGCCTGAG AGCTTCCTCCAGCTGGGTGCCGGCCTGAGCGTGGGCCTGAG < 41bp 1 0.537915565255572 1 0.812544107437134 experiment 0.924168869488855 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569563 chr16:2569560 synonymous SNV . 0 18 hm5C_associated_SNPs_37725 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643797876 0.374911785125732 0.999536712404248 hm5C_site_37222 DeepMRMD:0.374911785125732;iRNA_m5C:0.999536712404248 37223 chr1 33957297 33957297 1 + G A STAD 33957277 + 33957257 33957297 41 GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCG GGGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCA < 41bp 1 0.220910170562772 1 0.0734855234622955 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957277 chr1:33957297 nonsynonymous SNV 0.997 3 41 hm5C_associated_SNPs_37726 0 0 0 0 1 exosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_37223 DeepMRMD:1;iRNA_m5C:0.99953671215781 37224 chr1 33957297 33957297 1 + G A STAD 33957278 + 33957258 33957298 41 GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGT GGCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCAT < 41bp 1 0.112322703780141 1 0.117185115814209 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957278 chr1:33957297 nonsynonymous SNV 0.997 3 40 hm5C_associated_SNPs_37727 0 0 0 0 1 exosome 1 0.500231643921112 1 0.999536712157776 hm5C_site_37224 DeepMRMD:1;iRNA_m5C:0.999536712157776 37225 chr1 33957297 33957297 1 + G A STAD 33957279 + 33957259 33957299 41 GCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTA GCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCATA < 41bp 1 0.393214764271572 1 0.125858813524246 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957279 chr1:33957297 nonsynonymous SNV 0.997 3 39 hm5C_associated_SNPs_37728 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37225 DeepMRMD:1;iRNA_m5C:0.999536712157815 37226 chr1 24782721 24782721 1 + T C STAD 24782707 + 24782687 24782727 41 GGGAACCTGCAGCTTGACTACCCCATCTTCTACGTGATGTT GGGAACCTGCAGCTTGACTACCCCATCTTCTACGCGATGTT < 41bp 1 0.446974364451182 1 0.152356207370758 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24782707 chr1:24782721 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_37730 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643856765 1 0.999536712286471 hm5C_site_37226 DeepMRMD:1;iRNA_m5C:0.999536712286471 37227 chr20 23350276 23350276 1 + C A STAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCACTCCAGCGCCACCGCCGCATCCA < 41bp 1 0.573324415967801 1 0.448978245258331 experiment 0.853351168064397 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350276 synonymous SNV . 0 18 hm5C_associated_SNPs_37732 0 0 0 0 1 Cytosol 1 0.500227078345633 1 0.999545843308734 hm5C_site_37227 DeepMRMD:1;iRNA_m5C:0.999545843308734 37228 chr20 60881312 60881312 1 + C T STAD 60881329 + 60881309 60881349 41 CAACCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA CAATCCCCCGATGCCTGGGGCGCTGGGGGCCAGCGGAAGCA < 41bp 1 0.243465740766514 1 0.443653911352158 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60881329 chr20:60881312 synonymous SNV . 0 4 hm5C_associated_SNPs_37733 0 0 1 0 2 Ribosome 1 0.500231643922182 1 0.999536712155637 hm5C_site_37228 DeepMRMD:1;iRNA_m5C:0.999536712155637 37229 chr15 72057442 72057442 1 + C T STAD 72057443 + 72057423 72057463 41 ACACCTTTGAAGTGTTGGACCCCTCTGAATGTTCTTTCCTG ACACCTTTGAAGTGTTGGATCCCTCTGAATGTTCTTTCCTG < 41bp 1 0.0359938509489158 1 0.0171889960765839 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control THSD4 ENSG00000187720 CDS Human protein_coding chr15:72057443 chr15:72057442 synonymous SNV . 0 20 hm5C_associated_SNPs_37734 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37229 DeepMRMD:1;iRNA_m5C:0.999536712157815 37230 chr10 5955763 5955763 1 + A G STAD 5955758 + 5955738 5955778 41 TATCTTCAGGAGAATTCCTGCACTCAGGCCACAAAAGTTAA TATCTTCAGGAGAATTCCTGCACTCGGGCCACAAAAGTTAA < 41bp 1 0.08309370791557 1 0.0819756686687469 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5955758 chr10:5955763 nonsynonymous SNV 0.979 0 26 hm5C_associated_SNPs_37735 0 0 1 0 1 Ribosome 1 0.500231643937844 1 0.999536712124311 hm5C_site_37230 DeepMRMD:1;iRNA_m5C:0.999536712124311 37231 chr17 37358654 37358654 1 + A G STAD 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTCGATGCCGGAAAAGCACCTTGGCCCGCCGGAAGGGCA < 41bp 1 0.159166463642605 1 0.0478030145168304 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358654 nonsynonymous SNV 0.999 0 18 hm5C_associated_SNPs_37736 0 0 1 0 2 chromatin 1 0.500232294468102 1 0.999535411063796 hm5C_site_37231 DeepMRMD:1;iRNA_m5C:0.999535411063796 37232 chr17 37358654 37358654 1 + A G STAD 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCCGGAAAAGCACCTTGGCCCGCCGGAAGGGCAGGCACA < 41bp 1 0.273265420139609 1 0.0666538774967194 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358654 nonsynonymous SNV 0.999 0 12 hm5C_associated_SNPs_37737 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37232 DeepMRMD:1;iRNA_m5C:0.999536712157815 37233 chr17 37358654 37358654 1 + A G STAD 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCCGGAAAAGCACCTTGGCCCGCCGGAAGGGCAGGCACAT < 41bp 1 0.26508128354448 1 0.102415055036545 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358654 nonsynonymous SNV 0.999 0 11 hm5C_associated_SNPs_37738 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_37233 DeepMRMD:1;iRNA_m5C:0.999536712157814 37234 chr1 95639441 95639441 1 + C T STAD 95639425 + 95639405 95639445 41 CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATTAGCG < 41bp 1 0.249109572339758 1 0.31018140912056 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95639425 chr1:95639441 stopgain 0.996 1 37 hm5C_associated_SNPs_37740 0 0 1 0 2 unknown 1 0.500231643921091 1 0.999536712157818 hm5C_site_37234 DeepMRMD:1;iRNA_m5C:0.999536712157818 37235 chr2 201485953 201485953 1 + T C STAD 201485944 + 201485924 201485964 41 CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGCGACAG CTTCTGCTTTTTTACTGAAGCTGAGAAATCTCTGGCGACAG < 41bp 1 0.49603144997806 1 0.123355835676193 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201485944 chr2:201485953 nonsynonymous SNV 0.196 1 30 hm5C_associated_SNPs_37741 0 0 0 0 1 Endoplasmic reticulum 1 0.500231746153158 1 0.999536507693684 hm5C_site_37235 DeepMRMD:1;iRNA_m5C:0.999536507693684 37236 chr3 50091792 50091792 1 + C T STAD 50091805 + 50091785 50091825 41 TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG TGGGCACTGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG < 41bp 1 0.0725478456417169 1 0.0294938385486603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091805 chr3:50091792 stopgain 0.980 0 8 hm5C_associated_SNPs_37742 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37236 DeepMRMD:1;iRNA_m5C:0.999536712157815 37237 chr22 42276824 42276824 1 + C T STAD 42276812 + 42276792 42276832 41 CGCCTGGACCTGGCCTGCAGCCTCTCCTGGAACGTGATCCG CGCCTGGACCTGGCCTGCAGCCTCTCCTGGAATGTGATCCG < 41bp 1 0.0665729192897847 1 0.0680487453937531 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42276812 chr22:42276824 nonsynonymous SNV 0.981 0 33 hm5C_associated_SNPs_37743 0 0 1 0 0 Ribosome 1 0.500231643920907 1 0.999536712158186 hm5C_site_37237 DeepMRMD:1;iRNA_m5C:0.999536712158186 37238 chr2 190320086 190320086 1 + A G STAD 190320076 + 190320056 190320096 41 GCTGGTTTCAGTGAAACTGCCAAAATCCTCAAGCCAGGAAG GCTGGTTTCAGTGAAACTGCCAAAATCCTCGAGCCAGGAAG < 41bp 1 0.626467008980839 1 0.571805000305176 experiment 0.747065982038322 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR75 ENSG00000115368 CDS Human protein_coding chr2:190320076 chr2:190320086 synonymous SNV . 0 31 hm5C_associated_SNPs_37744 0 0 1 0 2 Nucleus 1 0.500231653237976 0.856389999389648 0.999536693524048 hm5C_site_37238 DeepMRMD:0.856389999389648;iRNA_m5C:0.999536693524048 37239 chr19 34868778 34868778 1 + G A STAD 34868761 + 34868741 34868781 41 GGCCCAGCTGAACCCCGAGTCCTCCCTGTTCATCATTGCCT GGCCCAGCTGAACCCCGAGTCCTCCCTGTTCATCATTACCT < 41bp 1 0.0310069427781602 1 0.0320827662944794 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPI ENSG00000105220 CDS Human protein_coding chr19:34868761 chr19:34868778 nonsynonymous SNV 0.611 5 38 hm5C_associated_SNPs_37745 0 0 1 0 1 Ribosome 1 0.500231643921028 1 0.999536712157944 hm5C_site_37239 DeepMRMD:1;iRNA_m5C:0.999536712157944 37240 chr2 236817445 236817445 1 + G A STAD 236817455 + 236817435 236817475 41 GAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCT GAAAGTCCCAAGGAAGAGGCCACCCCGAGCCACGTCAGCCT < 41bp 1 0.100515674889051 1 0.0566975772380829 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817455 chr2:236817445 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_37746 0 0 1 0 1 Nucleus 1 0.500231651655634 1 0.999536696688732 hm5C_site_37240 DeepMRMD:1;iRNA_m5C:0.999536696688732 37241 chr1 45267574 45267574 1 + C T STAD 45267571 + 45267551 45267591 41 GGTGGGGGATTTTGGGCTGGCAGCCCGGTTGGAGCCTCCGG GGTGGGGGATTTTGGGCTGGCAGTCCGGTTGGAGCCTCCGG < 41bp 1 0.218437286321373 1 0.198159843683243 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267571 chr1:45267574 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_37747 0 0 1 0 2 Cytosol 1 0.500231643920961 1 0.999536712158078 hm5C_site_37241 DeepMRMD:1;iRNA_m5C:0.999536712158078 37242 chr11 61404393 61404393 1 + G A STAD 61404392 + 61404372 61404412 41 CTCTGGAGAAACTGCTGCCTCGCATCTGGGAGAATGTGGGC CTCTGGAGAAACTGCTGCCTCACATCTGGGAGAATGTGGGC < 41bp 1 0.491501717349742 1 0.237794995307922 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404392 chr11:61404393 . . 0 22 hm5C_associated_SNPs_37748 0 0 0 0 0 unknown 1 0.500231643921097 1 0.999536712157807 hm5C_site_37242 DeepMRMD:1;iRNA_m5C:0.999536712157807 37243 chr11 61404393 61404393 1 + G A STAD 61404394 + 61404374 61404414 41 CTGGAGAAACTGCTGCCTCGCATCTGGGAGAATGTGGGCTT CTGGAGAAACTGCTGCCTCACATCTGGGAGAATGTGGGCTT < 41bp 1 0.325337471568489 1 0.206378608942032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404394 chr11:61404393 . . 0 20 hm5C_associated_SNPs_37749 0 0 0 0 0 unknown 1 0.500231643921094 1 0.999536712157812 hm5C_site_37243 DeepMRMD:1;iRNA_m5C:0.999536712157812 37244 chr6 29976041 29976041 1 + T C STAD 29976024 + 29976004 29976044 41 AACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACC AACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCCACC < 41bp 1 0.209852838482491 1 0.489329308271408 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976024 chr6:29976041 . . 0 38 hm5C_associated_SNPs_37750 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_37244 DeepMRMD:1;iRNA_m5C:0.999536712157815 37245 chr6 29976041 29976041 1 + T C STAD 29976025 + 29976005 29976045 41 ACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCTACCC ACATGAGGCATAACGAGGTCCTGGGTTCTGGGCTTCCACCC < 41bp 1 0.574385776633074 1 0.699830412864685 experiment 0.851228446733852 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HLA-J ENSG00000204622 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:29976025 chr6:29976041 . . 0 37 hm5C_associated_SNPs_37751 0 0 0 0 1 unknown 1 0.500231643921907 0.60033917427063 0.999536712156186 hm5C_site_37245 DeepMRMD:0.60033917427063;iRNA_m5C:0.999536712156186 37246 chr9 96859844 96859844 1 + G T STAD 96859846 + 96859826 96859866 41 TCTGCTTCATGGTTATGAGGCACGACTTCTGAAACACGTGC TCTGCTTCATGGTTATGATGCACGACTTCTGAAACACGTGC < 41bp 1 0.668791226432401 1 0.188356101512909 experiment 0.662417547135197 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPDC1 ENSG00000158079 CDS Human protein_coding chr9:96859846 chr9:96859844 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_37752 0 0 0 0 0 Nucleus 1 0.500247509310908 1 0.999504981378184 hm5C_site_37246 DeepMRMD:1;iRNA_m5C:0.999504981378184 37247 chr10 122625206 122625206 1 + G A STAD 122625218 + 122625198 122625238 41 AACTTTACGTGTTCGAAGATCTTATAATAACATTTTTACCA AACTTTACATGTTCGAAGATCTTATAATAACATTTTTACCA < 41bp 1 0.0519389390969793 1 0.102850884199142 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625218 chr10:122625206 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_37753 0 0 1 0 2 Nucleus 1 0.500211856386532 1 0.999576287226936 hm5C_site_37247 DeepMRMD:1;iRNA_m5C:0.999576287226936 37248 chr20 47639665 47639665 1 + T C STAD 47639658 + 47639638 47639678 41 TTGATACAGACCATTGACAACATTGTGTTCTACCCTGCGAC TTGATACAGACCATTGACAACATTGTGCTCTACCCTGCGAC < 41bp 1 0.106197612917404 1 0.0990519523620605 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47639658 chr20:47639665 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_37754 0 0 1 0 2 Cytosol 1 0.500232769171288 1 0.999534461657423 hm5C_site_37248 DeepMRMD:1;iRNA_m5C:0.999534461657423 37249 chr2 207651571 207651571 1 + T A STAD 207651570 + 207651550 207651590 41 GATGAATTACTTTCCCCTGGCTCCTTTTAATCAGCTTCTGC GATGAATTACTTTCCCCTGGCACCTTTTAATCAGCTTCTGC < 41bp 1 0.289544100013906 1 0.0635062456130981 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207651570 chr2:207651571 synonymous SNV . 0 22 hm5C_associated_SNPs_37755 0 0 1 0 1 Nucleus 1 0.500231657442484 1 0.999536685115033 hm5C_site_37249 DeepMRMD:1;iRNA_m5C:0.999536685115033 37250 chr2 207651571 207651571 1 + T A STAD 207651572 + 207651552 207651592 41 TGAATTACTTTCCCCTGGCTCCTTTTAATCAGCTTCTGCAA TGAATTACTTTCCCCTGGCACCTTTTAATCAGCTTCTGCAA < 41bp 1 0.0342656689342255 1 0.0149722397327423 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207651572 chr2:207651571 synonymous SNV . 0 20 hm5C_associated_SNPs_37756 0 0 1 0 1 Nucleus 1 0.500231644036259 1 0.999536711927483 hm5C_site_37250 DeepMRMD:1;iRNA_m5C:0.999536711927483 37251 chr11 66834258 66834258 1 + C T STAD 66834276 + 66834256 66834296 41 AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG AGTGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG < 41bp 1 0.54803004751275 1 0.841198325157166 experiment 0.9039399049745 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66834276 chr11:66834258 synonymous SNV . 0 3 hm5C_associated_SNPs_37757 0 0 0 0 2 Cytosol 1 0.500232098261867 0.317603349685668 0.999535803476266 hm5C_site_37251 DeepMRMD:0.317603349685668;iRNA_m5C:0.999535803476266 37252 chr12 56420736 56420736 1 + G A STAD 56420731 + 56420711 56420751 41 GAGCCTCACTCCCCTGGGGGCATCCGGCTGCCCAATGGCAA GAGCCTCACTCCCCTGGGGGCATCCAGCTGCCCAATGGCAA < 41bp 1 0.0809022592083556 1 0.0628744959831238 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56420731 chr12:56420736 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_37760 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37252 DeepMRMD:1;iRNA_m5C:0.999536712157815 37253 chr16 66976138 66976138 1 + T C STAD 66976124 + 66976104 66976144 41 GCGGACTCCATGTTTGTGATCCCTGCACTCCAAGTAGCACA GCGGACTCCATGTTTGTGATCCCTGCACTCCAAGCAGCACA < 41bp 1 0.102232706100295 1 0.0359751284122467 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES2 ENSG00000172831 CDS Human protein_coding chr16:66976124 chr16:66976138 nonsynonymous SNV 0.953 1 35 hm5C_associated_SNPs_37761 0 0 1 0 0 Cytosol 1 0.500232101807361 1 0.999535796385278 hm5C_site_37253 DeepMRMD:1;iRNA_m5C:0.999535796385278 37254 chr6 42996954 42996954 1 + G C STAD 42996946 + 42996926 42996966 41 CAGGCAAGGACAGGAGACATCTCCCTTTGAGCAAAGAGTAA CAGGCAAGGACAGGAGACATCTCCCTTTCAGCAAAGAGTAA < 41bp 1 0.429930494168599 1 0.622335910797119 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RRP36 ENSG00000124541 CDS Human protein_coding chr6:42996946 chr6:42996954 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_37762 0 0 1 0 0 Ribosome 1 0.500231643930306 0.755328178405762 0.999536712139387 hm5C_site_37254 DeepMRMD:0.755328178405762;iRNA_m5C:0.999536712139387 37255 chr1 39877622 39877622 1 + G A STAD 39877617 + 39877597 39877637 41 CTTATTGCCCACGTTGATATCATGAGAGACACTTCCACTGT CTTATTGCCCACGTTGATATCATGAAAGACACTTCCACTGT < 41bp 1 0.336190867242402 1 0.465021729469299 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA0754 ENSG00000255103 CDS Human other chr1:39877617 chr1:39877622 nonsynonymous SNV 0.026 1 26 hm5C_associated_SNPs_37763 0 0 0 0 0 Nucleus 1 0.500231651537338 1 0.999536696925324 hm5C_site_37255 DeepMRMD:1;iRNA_m5C:0.999536696925324 37256 chr1 228333243 228333243 1 + C T STAD 228333247 + 228333227 228333267 41 GGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAAGAGC GGCCTGTGGTGCTGAGTGGGCCTTCGGGAGCTGGGAAGAGC < 41bp 1 0.0551328470436281 1 0.175573736429214 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333247 chr1:228333243 nonsynonymous SNV 0.320 0 17 hm5C_associated_SNPs_37764 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643926582 1 0.999536712146837 hm5C_site_37256 DeepMRMD:1;iRNA_m5C:0.999536712146837 37257 chr17 80676889 80676889 1 + G T STAD 80676908 + 80676888 80676928 41 GGAGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTG GTAGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTG < 41bp 1 0.485376705226122 1 0.0667519569396973 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80676908 chr17:80676889 synonymous SNV . 0 2 hm5C_associated_SNPs_37765 0 0 1 0 1 Ribosome 1 0.500231650283458 1 0.999536699433084 hm5C_site_37257 DeepMRMD:1;iRNA_m5C:0.999536699433084 37258 chr10 101715527 101715527 1 + T A STAD 101715533 - 101715513 101715553 41 GAGAAGAGCTTGGCAGGGCCCGGCACAGAGCCAGATAAAAT GAGAAGAGCTTGGCAGGGCCCGGCACTGAGCCAGATAAAAT < 41bp 1 0.60164514805761 1 0.762858629226685 experiment 0.796709703884779 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNMBP ENSG00000107554 CDS Human protein_coding chr10:101715533 chr10:101715527 synonymous SNV . 0 27 hm5C_associated_SNPs_37766 0 0 0 0 0 Nucleus 1 0.500231631753576 0.47428274154663 0.999536736492848 hm5C_site_37258 DeepMRMD:0.47428274154663;iRNA_m5C:0.999536736492848 37259 chrX 73047073 73047073 1 + G A STAD 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTGATAGGTGCAGAACGTTGGCTATCAGAGCAAGCA < 41bp 1 0.143249383314775 1 0.0770623683929443 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047073 . . 0 24 hm5C_associated_SNPs_37767 0 0 1 2 0 unknown 1 0.500231647970441 1 0.999536704059118 hm5C_site_37259 DeepMRMD:1;iRNA_m5C:0.999536704059118 37260 chr11 5624592 5624592 1 + T C STAD 5624588 + 5624568 5624608 41 TACGAGAAGAGGTGACCTGCCCTATCTGCCTGGAGCTCCTA TACGAGAAGAGGTGACCTGCCCTACCTGCCTGGAGCTCCTA < 41bp 1 0.0809611705152551 1 0.108003199100494 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5624588 chr11:5624592 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_37768 0 0 0 0 0 unknown 1 0.500231643930468 1 0.999536712139063 hm5C_site_37260 DeepMRMD:1;iRNA_m5C:0.999536712139063 37261 chr8 28574480 28574480 1 + A G STAD 28574488 + 28574468 28574508 41 GTGGCCCAGTCCACCTTCTACACTGTCCAGTACAGACCTGG GTGGCCCAGTCCGCCTTCTACACTGTCCAGTACAGACCTGG < 41bp 1 0.270730401962114 1 0.146026164293289 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28574488 chr8:28574480 nonsynonymous SNV 0.973 2 13 hm5C_associated_SNPs_37769 0 0 1 0 0 Endoplasmic reticulum 1 0.500231115161599 1 0.999537769676801 hm5C_site_37261 DeepMRMD:1;iRNA_m5C:0.999537769676801 37262 chr16 2489443 2489443 1 + C T STAD 2489428 + 2489408 2489448 41 GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGCGACAG GGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGTGACAG < 41bp 1 0.022874809402935 1 0.0376834571361542 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNF ENSG00000162063 CDS Human protein_coding chr16:2489428 chr16:2489443 synonymous SNV . 0 36 hm5C_associated_SNPs_37770 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37262 DeepMRMD:1;iRNA_m5C:0.999536712157815 37263 chr4 30723127 30723127 1 + C T STAD 30723130 + 30723110 30723150 41 GCTCTCGCTCAGCCTGGCGGCCGCCAAGCAGCTCCTCCGGT GCTCTCGCTCAGCCTGGTGGCCGCCAAGCAGCTCCTCCGGT < 41bp 1 0.206879831056621 1 0.079887717962265 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCDH7 ENSG00000169851 CDS Human protein_coding chr4:30723130 chr4:30723127 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_37772 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_37263 DeepMRMD:1;iRNA_m5C:0.999536712157814 37264 chr2 74077571 74077571 1 + C T STAD 74077580 + 74077560 74077600 41 GATTACTGCAACACAGAGAACGAAGAAGAACTTTTCCTCAT GATTACTGCAATACAGAGAACGAAGAAGAACTTTTCCTCAT < 41bp 1 0.589424771022545 1 0.603228807449341 experiment 0.82115045795491 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74077580 chr2:74077571 synonymous SNV . 0 12 hm5C_associated_SNPs_37773 0 0 1 0 2 Ribosome 1 0.500231643974259 0.793542385101318 0.999536712051482 hm5C_site_37264 DeepMRMD:0.793542385101318;iRNA_m5C:0.999536712051482 37265 chr1 26566316 26566316 1 + C T STAD 26566310 + 26566290 26566330 41 AAATATCCAACTGAGGGGATCTCTCACGTCACTTCACCGAG AAATATCCAACTGAGGGGATCTCTCATGTCACTTCACCGAG < 41bp 1 0.112679772201351 1 0.0644918978214264 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP85 ENSG00000130695 CDS Human protein_coding chr1:26566310 chr1:26566316 synonymous SNV . 0 27 hm5C_associated_SNPs_37774 0 0 1 0 2 Nucleus 1 0.500231643921636 1 0.999536712156728 hm5C_site_37265 DeepMRMD:1;iRNA_m5C:0.999536712156728 37266 chr12 6647006 6647006 1 + T C STAD 6647018 + 6646998 6647038 41 CAAGAAGGTGGTGAAGCAGGCGTCGGAGGGCCCCCTCAAGG CAAGAAGGCGGTGAAGCAGGCGTCGGAGGGCCCCCTCAAGG < 41bp 1 0.478531413264384 1 0.583746612071991 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647018 chr12:6647006 nonsynonymous SNV 0.955 1 9 hm5C_associated_SNPs_37775 0 0 1 0 0 Ribosome 1 0.500231643921092 0.832506775856018 0.999536712157815 hm5C_site_37266 DeepMRMD:0.832506775856018;iRNA_m5C:0.999536712157815 37267 chr8 144332292 144332292 1 + G A STAD 144332280 + 144332260 144332300 41 AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCGGATCTT AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGACGGATCTT < 41bp 1 0.217480754994503 1 0.227294862270355 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP41 ENSG00000181638;ENSG00000264668 CDS Human other chr8:144332280 chr8:144332292 synonymous SNV . 0 33 hm5C_associated_SNPs_37777 0 0 1 1 0 chromatin 1 0.50023164402371 1 0.999536711952581 hm5C_site_37267 DeepMRMD:1;iRNA_m5C:0.999536711952581 37268 chr1 109772104 109772104 1 + G A STAD 109772124 + 109772104 109772144 41 GGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC AGAGCGGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCC < 41bp 1 0.580154358163321 1 0.808368682861328 experiment 0.839691283673357 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772124 chr1:109772104 synonymous SNV . 0 1 hm5C_associated_SNPs_37778 0 0 1 0 2 Ribosome 1 0.500231643921092 0.383262634277344 0.999536712157815 hm5C_site_37268 DeepMRMD:0.383262634277344;iRNA_m5C:0.999536712157815 37269 chr11 988598 988598 1 + A G STAD 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCGTGGACCTCCTCTGCGCCATGTGCGACCGC < 41bp 1 0.571663907938254 1 0.230786472558975 experiment 0.856672184123492 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988598 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_37779 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_37269 DeepMRMD:1;iRNA_m5C:0.999536712157816 37270 chrX 48457775 48457775 1 + G A STAD 48457763 + 48457743 48457783 41 CTTTGAGGATGATCCTCGGGCCCTGGGGGCCCGTGGGCACC CTTTGAGGATGATCCTCGGGCCCTGGGGGCCCATGGGCACC < 41bp 1 0.160797891083307 1 0.0681198835372925 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457763 chrX:48457775 nonsynonymous SNV 0.998 3 33 hm5C_associated_SNPs_37780 0 0 1 0 1 Ribosome 1 0.500231603123857 1 0.999536793752285 hm5C_site_37270 DeepMRMD:1;iRNA_m5C:0.999536793752285 37271 chrX 48457775 48457775 1 + G A STAD 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TGATCCTCGGGCCCTGGGGGCCCATGGGCACCGTCGTTCTG < 41bp 1 0.146205443784531 1 0.0588482618331909 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457775 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_37781 0 0 1 0 1 Ribosome 1 0.500231635643109 1 0.999536728713782 hm5C_site_37271 DeepMRMD:1;iRNA_m5C:0.999536728713782 37272 chrX 48457775 48457775 1 + G A STAD 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT GATCCTCGGGCCCTGGGGGCCCATGGGCACCGTCGTTCTGT < 41bp 1 0.18689609123279 1 0.214610069990158 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457775 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_37782 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37272 DeepMRMD:1;iRNA_m5C:0.999536712157815 37273 chrX 48457775 48457775 1 + G A STAD 48457774 + 48457754 48457794 41 ATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGTC ATCCTCGGGCCCTGGGGGCCCATGGGCACCGTCGTTCTGTC < 41bp 1 0.657908298003491 1 0.45886442065239 experiment 0.684183403993018 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457774 chrX:48457775 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_37783 0 0 1 0 1 Ribosome 1 0.500231657134948 1 0.999536685730105 hm5C_site_37273 DeepMRMD:1;iRNA_m5C:0.999536685730105 37274 chr1 55073633 55073633 1 + G A STAD 55073619 + 55073599 55073639 41 CCCTTCCTTCACTCAGGGACCCCTATGTCATCGCGCTGAGG CCCTTCCTTCACTCAGGGACCCCTATGTCATCGCACTGAGG < 41bp 1 0.108720434619539 1 0.0265292227268219 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55073619 chr1:55073633 synonymous SNV . 0 35 hm5C_associated_SNPs_37784 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37274 DeepMRMD:1;iRNA_m5C:0.999536712157815 37275 chr8 28906535 28906535 1 + T C STAD 28906521 + 28906501 28906541 41 ATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTC ATGTGCAGAGTCCAGGAGGCCACTCAAACAGTGACGATGTC < 41bp 1 0.162391650747259 1 0.0698150396347046 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906521 chr8:28906535 synonymous SNV . 0 35 hm5C_associated_SNPs_37785 0 0 1 1 4 Nucleus 1 0.50023164390214 1 0.99953671219572 hm5C_site_37275 DeepMRMD:1;iRNA_m5C:0.99953671219572 37276 chr8 28906535 28906535 1 + T C STAD 28906525 + 28906505 28906545 41 GCAGAGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACG GCAGAGTCCAGGAGGCCACTCAAACAGTGACGATGTCGACG < 41bp 1 0.301478409318869 1 0.195876657962799 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906525 chr8:28906535 synonymous SNV . 0 31 hm5C_associated_SNPs_37786 0 0 1 1 4 Nucleus 1 0.500231644002802 1 0.999536711994397 hm5C_site_37276 DeepMRMD:1;iRNA_m5C:0.999536711994397 37277 chr8 28906535 28906535 1 + T C STAD 28906529 + 28906509 28906549 41 AGTCCAGGAGGCCACTCAAACAGTGATGATGTCGACGGGAA AGTCCAGGAGGCCACTCAAACAGTGACGATGTCGACGGGAA < 41bp 1 0.695335860425846 1 0.553985714912415 experiment 0.609328279148307 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906529 chr8:28906535 synonymous SNV . 0 27 hm5C_associated_SNPs_37787 0 0 1 1 4 Nucleus 1 0.500231643921064 0.89202857017517 0.999536712157872 hm5C_site_37277 DeepMRMD:0.89202857017517;iRNA_m5C:0.999536712157872 37278 chr8 28906535 28906535 1 + T C STAD 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GACGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC < 41bp 1 0.640590449828104 1 0.323295056819916 experiment 0.718819100343792 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906535 synonymous SNV . 0 3 hm5C_associated_SNPs_37789 0 0 1 1 4 Nucleus 1 0.50023164079194 1 0.99953671841612 hm5C_site_37278 DeepMRMD:1;iRNA_m5C:0.99953671841612 37279 chr2 219679346 219679346 1 + C T STAD 219679360 + 219679340 219679380 41 CCCCACCGCTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG CCCCACTGCTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG < 41bp 1 0.459350611691194 1 0.246145486831665 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219679360 chr2:219679346 nonsynonymous SNV 0.580 5 7 hm5C_associated_SNPs_37790 2 0 1 0 1 cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_37279 DeepMRMD:1;iRNA_m5C:0.999536712157814 Regression of motor development with severe dystonia and corresponding basal ganglia lesions Regression of motor development with severe dystonia and corresponding basal ganglia lesions 37280 chr6 32942267 32942267 1 + C T STAD 32942278 + 32942258 32942298 41 GCAGGGTTGCTGGGGCTGGGCCCAGAAGCAGCAGCACCAGG GCAGGGTTGTTGGGGCTGGGCCCAGAAGCAGCAGCACCAGG < 41bp 1 0.519060072187939 1 0.170149981975555 experiment 0.961879855624121 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32942278 chr6:32942267 synonymous SNV . 0 10 hm5C_associated_SNPs_37791 0 0 1 0 1 Cytosol 1 0.500231643923471 1 0.999536712153058 hm5C_site_37280 DeepMRMD:1;iRNA_m5C:0.999536712153058 37281 chr1 59812011 59812011 1 + T C STAD 59811996 + 59811976 59812016 41 ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGTACGTC ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGCACGTC < 41bp 1 0.493926336070769 1 0.0674289464950562 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FGGY ENSG00000172456 CDS Human protein_coding chr1:59811996 chr1:59812011 nonsynonymous SNV 0.089 3 36 hm5C_associated_SNPs_37792 0 0 0 0 2 Endoplasmic reticulum 1 0.50078278863288 1 0.99843442273424 hm5C_site_37281 DeepMRMD:1;iRNA_m5C:0.99843442273424 37282 chr5 177633848 177633848 1 + C A STAD 177633835 + 177633815 177633855 41 AGAAAATCTTCGTTGGGGGTCTGAATCCTGAAGCCACTGAG AGAAAATCTTCGTTGGGGGTCTGAATCCTGAAGACACTGAG < 41bp 1 0.488044327504085 1 0.365784764289856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633835 chr5:177633848 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_37793 0 0 1 0 1 Cytosol 1 0.500231643921101 1 0.999536712157799 hm5C_site_37282 DeepMRMD:1;iRNA_m5C:0.999536712157799 37283 chr5 177633848 177633848 1 + C A STAD 177633841 + 177633821 177633861 41 TCTTCGTTGGGGGTCTGAATCCTGAAGCCACTGAGGAAAAG TCTTCGTTGGGGGTCTGAATCCTGAAGACACTGAGGAAAAG < 41bp 1 0.590466089743062 1 0.374136239290237 experiment 0.819067820513877 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633841 chr5:177633848 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_37794 0 0 1 0 1 Cytosol 1 0.50023043226324 1 0.999539135473521 hm5C_site_37283 DeepMRMD:1;iRNA_m5C:0.999539135473521 37284 chr5 177633848 177633848 1 + C A STAD 177633849 + 177633829 177633869 41 GGGGGTCTGAATCCTGAAGCCACTGAGGAAAAGATCAGGGA GGGGGTCTGAATCCTGAAGACACTGAGGAAAAGATCAGGGA < 41bp 1 0.437125771551946 1 0.162801325321198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633849 chr5:177633848 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_37795 0 0 1 0 1 Cytosol 1 0.500231643921056 1 0.999536712157888 hm5C_site_37284 DeepMRMD:1;iRNA_m5C:0.999536712157888 37285 chr5 177633848 177633848 1 + C A STAD 177633851 + 177633831 177633871 41 GGGTCTGAATCCTGAAGCCACTGAGGAAAAGATCAGGGAGT GGGTCTGAATCCTGAAGACACTGAGGAAAAGATCAGGGAGT < 41bp 1 0.606469327072594 1 0.345520794391632 experiment 0.787061345854811 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633851 chr5:177633848 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_37796 0 0 1 0 1 Cytosol 1 0.500231644885786 1 0.999536710228427 hm5C_site_37285 DeepMRMD:1;iRNA_m5C:0.999536710228427 37286 chr1 26883500 26883500 1 + T C STAD 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATACCGCCGTGAGATCAAGCCACCCTTCAAGCCAGC < 41bp 1 0.29113478305333 1 0.657487571239471 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883500 synonymous SNV . 0 12 hm5C_associated_SNPs_37797 0 0 1 0 1 Ribosome 1 0.500231635682885 0.685024857521058 0.99953672863423 hm5C_site_37286 DeepMRMD:0.685024857521058;iRNA_m5C:0.99953672863423 37287 chr9 2186173 2186173 1 + G T STAD 2186154 + 2186134 2186174 41 GAGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG GAGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGATG < 41bp 1 0.237480261794933 1 0.085186630487442 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186154 chr9:2186173 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_37799 0 0 1 0 1 Nucleus 1 0.500231643923534 1 0.999536712152932 hm5C_site_37287 DeepMRMD:1;iRNA_m5C:0.999536712152932 37288 chr9 2186173 2186173 1 + G T STAD 2186155 + 2186135 2186175 41 AGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGGA AGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGATGA < 41bp 1 0.324110910503933 1 0.588355481624603 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186155 chr9:2186173 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_37800 0 0 1 0 1 Nucleus 1 0.500231643925308 0.823289036750794 0.999536712149384 hm5C_site_37288 DeepMRMD:0.823289036750794;iRNA_m5C:0.999536712149384 37289 chr9 2186173 2186173 1 + G T STAD 2186182 + 2186162 2186202 41 GAAGAGAGTGAGGATGAAAGCAATGAAGAGGAGGAAGAGGA GAAGAGAGTGATGATGAAAGCAATGAAGAGGAGGAAGAGGA < 41bp 1 0.261531025400006 1 0.346851944923401 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186182 chr9:2186173 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_37801 0 0 1 0 1 Nucleus 1 0.500231644493909 1 0.999536711012182 hm5C_site_37289 DeepMRMD:1;iRNA_m5C:0.999536711012182 37290 chr10 70968476 70968476 1 + G T STAD 70968483 + 70968463 70968503 41 AAATGTCTGAGACGCATAAGCTGTTGAATTTGGAGGGCTTT AAATGTCTGAGACTCATAAGCTGTTGAATTTGGAGGGCTTT < 41bp 1 0.327298488173867 1 0.184949100017548 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70968483 chr10:70968476 synonymous SNV . 0 14 hm5C_associated_SNPs_37802 0 0 1 0 0 Cytosol 1 0.500231643808534 1 0.999536712382932 hm5C_site_37290 DeepMRMD:1;iRNA_m5C:0.999536712382932 37291 chr20 43243338 43243338 1 + C T STAD 43243326 + 43243306 43243346 41 AAGCTGGCTGGAGACATGGGCGAGCTGGCACTCGAGGGGGC AAGCTGGCTGGAGACATGGGCGAGCTGGCACTTGAGGGGGC < 41bp 1 0.677398179379485 1 0.442978084087372 experiment 0.64520364124103 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKIG ENSG00000168734 CDS Human protein_coding chr20:43243326 chr20:43243338 synonymous SNV . 0 33 hm5C_associated_SNPs_37803 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_37291 DeepMRMD:1;iRNA_m5C:0.999536712157811 37292 chr16 56966259 56966259 1 + G A STAD 56966261 + 56966241 56966281 41 GACCGCGGCTGGAGTGTGGGCCACCTCAAGGCCCACCTGAG GACCGCGGCTGGAGTGTGAGCCACCTCAAGGCCCACCTGAG < 41bp 1 0.38873594477801 1 0.106992214918137 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966261 chr16:56966259 nonsynonymous SNV 0.983 0 19 hm5C_associated_SNPs_37804 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37292 DeepMRMD:1;iRNA_m5C:0.999536712157815 37293 chr16 56966259 56966259 1 + G A STAD 56966262 + 56966242 56966282 41 ACCGCGGCTGGAGTGTGGGCCACCTCAAGGCCCACCTGAGC ACCGCGGCTGGAGTGTGAGCCACCTCAAGGCCCACCTGAGC < 41bp 1 0.675764605365647 1 0.271750032901764 experiment 0.648470789268706 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966262 chr16:56966259 nonsynonymous SNV 0.983 0 18 hm5C_associated_SNPs_37805 0 0 1 0 1 Ribosome 1 0.500235201895713 1 0.999529596208575 hm5C_site_37293 DeepMRMD:1;iRNA_m5C:0.999529596208575 37294 chr16 56966259 56966259 1 + G A STAD 56966272 + 56966252 56966292 41 GAGTGTGGGCCACCTCAAGGCCCACCTGAGCCGCGTCTACC GAGTGTGAGCCACCTCAAGGCCCACCTGAGCCGCGTCTACC < 41bp 1 0.223060466337377 1 0.0781300663948059 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966272 chr16:56966259 nonsynonymous SNV 0.983 0 8 hm5C_associated_SNPs_37806 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37294 DeepMRMD:1;iRNA_m5C:0.999536712157815 37295 chr16 56966259 56966259 1 + G A STAD 56966273 + 56966253 56966293 41 AGTGTGGGCCACCTCAAGGCCCACCTGAGCCGCGTCTACCC AGTGTGAGCCACCTCAAGGCCCACCTGAGCCGCGTCTACCC < 41bp 1 0.422579458387799 1 0.0529174208641052 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966273 chr16:56966259 nonsynonymous SNV 0.983 0 7 hm5C_associated_SNPs_37807 0 0 1 0 1 Ribosome 1 0.500231645243954 1 0.999536709512091 hm5C_site_37295 DeepMRMD:1;iRNA_m5C:0.999536709512091 37296 chr16 56966259 56966259 1 + G A STAD 56966274 + 56966254 56966294 41 GTGTGGGCCACCTCAAGGCCCACCTGAGCCGCGTCTACCCC GTGTGAGCCACCTCAAGGCCCACCTGAGCCGCGTCTACCCC < 41bp 1 0.668035752586632 1 0.0339752733707428 experiment 0.663928494826736 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966274 chr16:56966259 nonsynonymous SNV 0.983 0 6 hm5C_associated_SNPs_37808 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37296 DeepMRMD:1;iRNA_m5C:0.999536712157815 37297 chr4 57340534 57340534 1 + T C STAD 57340545 + 57340525 57340565 41 ACCAGGCCATGAAAATCCTACAAAAAGCTGAAGGTTGGAAG ACCAGGCCACGAAAATCCTACAAAAAGCTGAAGGTTGGAAG < 41bp 1 0.528787363807641 1 0.340191006660461 experiment 0.942425272384719 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340545 chr4:57340534 nonsynonymous SNV 0.996 1 10 hm5C_associated_SNPs_37809 0 0 1 0 2 Cytosol 1 0.500231643368087 1 0.999536713263826 hm5C_site_37297 DeepMRMD:1;iRNA_m5C:0.999536713263826 37298 chr9 35793058 35793058 1 + G A STAD 35793057 + 35793037 35793077 41 AGCAGGCCACCCACTTCATCCGGGCCAACGGGCGCAGTGAG AGCAGGCCACCCACTTCATCCAGGCCAACGGGCGCAGTGAG < 41bp 1 0.51490278966032 1 0.925572395324707 experiment 0.97019442067936 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NPR2 ENSG00000159899 CDS Human protein_coding chr9:35793057 chr9:35793058 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_37810 0 0 0 0 1 chromatin 1 0.500231643975765 0.148855209350586 0.999536712048469 hm5C_site_37298 DeepMRMD:0.148855209350586;iRNA_m5C:0.999536712048469 37299 chrX 41089041 41089041 1 + A G STAD 41089025 + 41089005 41089045 41 AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGCCA AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAGGCCA < 41bp 1 0.238126552518316 1 0.808076202869415 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089025 chrX:41089041 synonymous SNV . 0 37 hm5C_associated_SNPs_37812 0 0 0 0 1 Nucleus 1 0.500231656085463 0.38384759426117 0.999536687829074 hm5C_site_37299 DeepMRMD:0.38384759426117;iRNA_m5C:0.999536687829074 37300 chrX 41089041 41089041 1 + A G STAD 41089043 + 41089023 41089063 41 TCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG TCCAGAGGAGGTAAAAAAGGCCACCAGTGTGCAGCAGATAG < 41bp 1 0.0434239766931747 1 0.181370079517365 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089043 chrX:41089041 synonymous SNV . 0 19 hm5C_associated_SNPs_37813 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37300 DeepMRMD:1;iRNA_m5C:0.999536712157815 37301 chrX 41089041 41089041 1 + A G STAD 41089044 + 41089024 41089064 41 CCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGA CCAGAGGAGGTAAAAAAGGCCACCAGTGTGCAGCAGATAGA < 41bp 1 0.427387701796017 1 0.193246901035309 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089044 chrX:41089041 synonymous SNV . 0 18 hm5C_associated_SNPs_37814 0 0 0 0 1 Nucleus 1 0.500231639703769 1 0.999536720592463 hm5C_site_37301 DeepMRMD:1;iRNA_m5C:0.999536720592463 37302 chrX 41089041 41089041 1 + A G STAD 41089046 + 41089026 41089066 41 AGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAA AGAGGAGGTAAAAAAGGCCACCAGTGTGCAGCAGATAGAAA < 41bp 1 0.059269396715125 1 0.0583381056785583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089046 chrX:41089041 synonymous SNV . 0 16 hm5C_associated_SNPs_37815 0 0 0 0 1 Nucleus 1 0.500203501802204 1 0.999592996395592 hm5C_site_37302 DeepMRMD:1;iRNA_m5C:0.999592996395592 37303 chrX 41089041 41089041 1 + A G STAD 41089047 + 41089027 41089067 41 GAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAAT GAGGAGGTAAAAAAGGCCACCAGTGTGCAGCAGATAGAAAT < 41bp 1 0.109739060348811 1 0.109059423208237 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089047 chrX:41089041 synonymous SNV . 0 15 hm5C_associated_SNPs_37816 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37303 DeepMRMD:1;iRNA_m5C:0.999536712157815 37304 chr6 15496755 15496755 1 + G T STAD 15496746 + 15496726 15496766 41 GGGCGGCAGCTGCGGGAGGGCCTGCAGCTGCGGGAGGGGCT GGGCGGCAGCTGCGGGAGGGCCTGCAGCTTCGGGAGGGGCT < 41bp 1 0.0655747239415851 1 0.20501697063446 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15496746 chr6:15496755 synonymous SNV . 0 30 hm5C_associated_SNPs_37817 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37304 DeepMRMD:1;iRNA_m5C:0.999536712157815 37305 chr6 15496755 15496755 1 + G T STAD 15496765 + 15496745 15496785 41 GCCTGCAGCTGCGGGAGGGGCTGCGGAACTCCAAGAGGAGA GCCTGCAGCTTCGGGAGGGGCTGCGGAACTCCAAGAGGAGA < 41bp 1 0.657541902841375 1 0.40734788775444 experiment 0.684916194317249 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15496765 chr6:15496755 synonymous SNV . 0 11 hm5C_associated_SNPs_37818 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_37305 DeepMRMD:1;iRNA_m5C:0.999536712157815 37306 chr12 101520836 101520836 1 + C T STAD 101520850 + 101520830 101520870 41 CCACAACGAGTGGCCGTGACCATGTAGGTGAGAGGTGTGCT CCACAATGAGTGGCCGTGACCATGTAGGTGAGAGGTGTGCT < 41bp 1 0.418424681803085 1 0.291426539421082 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANO4 ENSG00000151572 CDS Human protein_coding chr12:101520850 chr12:101520836 synonymous SNV . 0 7 hm5C_associated_SNPs_37819 0 0 0 0 2 exosome 1 0.500231210380229 1 0.999537579239542 hm5C_site_37306 DeepMRMD:1;iRNA_m5C:0.999537579239542 37307 chr1 223943271 223943271 1 + G A STAD 223943279 + 223943259 223943299 41 TGCACCTTCCTGGTGGGGCTCATTCAGAAGCACCGACGGCG TGCACCTTCCTGATGGGGCTCATTCAGAAGCACCGACGGCG < 41bp 1 0.0521177731039747 1 0.0619589388370514 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943279 chr1:223943271 nonsynonymous SNV 0.999 5 13 hm5C_associated_SNPs_37820 0 0 1 0 2 Ribosome 1 0.500231643920689 1 0.999536712158622 hm5C_site_37307 DeepMRMD:1;iRNA_m5C:0.999536712158622 37308 chr17 4685809 4685809 1 + G A STAD 4685815 + 4685795 4685835 41 CAGATGCTGCGCTCGGTCTTCTCCTCGGCGTTCGGGGTGCT CAGATGCTGCGCTCAGTCTTCTCCTCGGCGTTCGGGGTGCT < 41bp 1 0.411580577282588 1 0.275240063667297 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4685815 chr17:4685809 synonymous SNV . 0 15 hm5C_associated_SNPs_37821 0 0 0 0 1 cytosol 1 0.500231628816989 1 0.999536742366023 hm5C_site_37308 DeepMRMD:1;iRNA_m5C:0.999536742366023 37309 chr17 55083545 55083545 1 + C T STAD 55083541 + 55083521 55083561 41 TGTTTTTTTCTAGGTTCCTTCTGACCAAGGGGACATGGCTC TGTTTTTTTCTAGGTTCCTTCTGATCAAGGGGACATGGCTC < 41bp 1 0.363265322908305 1 0.401621013879776 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55083541 chr17:55083545 synonymous SNV . 0 25 hm5C_associated_SNPs_37822 0 0 1 0 1 Ribosome 1 0.500231643921888 1 0.999536712156223 hm5C_site_37309 DeepMRMD:1;iRNA_m5C:0.999536712156223 37310 chr22 24573539 24573539 1 + C A STAD 24573545 + 24573525 24573565 41 AGTGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAG AGTGAGACTCAGCCACTGAGCTCTCCCCCAACAGCTGCCAG < 41bp 1 0.0899451025822109 1 0.368160486221313 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573545 chr22:24573539 synonymous SNV . 0 15 hm5C_associated_SNPs_37823 0 0 1 0 1 Cytosol 1 0.50023441799964 1 0.99953116400072 hm5C_site_37310 DeepMRMD:1;iRNA_m5C:0.99953116400072 37311 chr22 24573539 24573539 1 + C A STAD 24573547 + 24573527 24573567 41 TGAGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCT TGAGACTCAGCCACTGAGCTCTCCCCCAACAGCTGCCAGCT < 41bp 1 0.112151135191555 1 0.204703629016876 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573547 chr22:24573539 synonymous SNV . 0 13 hm5C_associated_SNPs_37824 0 0 1 0 1 Cytosol 1 0.500231643954008 1 0.999536712091984 hm5C_site_37311 DeepMRMD:1;iRNA_m5C:0.999536712091984 37312 chr22 24573539 24573539 1 + C A STAD 24573549 + 24573529 24573569 41 AGACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCC AGACTCAGCCACTGAGCTCTCCCCCAACAGCTGCCAGCTCC < 41bp 1 0.151581801947864 1 0.648534417152405 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573549 chr22:24573539 synonymous SNV . 0 11 hm5C_associated_SNPs_37825 0 0 1 0 1 Cytosol 1 0.500231643921092 0.70293116569519 0.999536712157815 hm5C_site_37312 DeepMRMD:0.70293116569519;iRNA_m5C:0.999536712157815 37313 chr22 24573539 24573539 1 + C A STAD 24573550 + 24573530 24573570 41 GACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCA GACTCAGCCACTGAGCTCTCCCCCAACAGCTGCCAGCTCCA < 41bp 1 0.177631419395093 1 0.215960502624512 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573550 chr22:24573539 synonymous SNV . 0 10 hm5C_associated_SNPs_37826 0 0 1 0 1 Cytosol 1 0.500231643921003 1 0.999536712157994 hm5C_site_37313 DeepMRMD:1;iRNA_m5C:0.999536712157994 37314 chr22 24573539 24573539 1 + C A STAD 24573551 + 24573531 24573571 41 ACTCAGCCCCTGAGCTCTCCCCCAACAGCTGCCAGCTCCAA ACTCAGCCACTGAGCTCTCCCCCAACAGCTGCCAGCTCCAA < 41bp 1 0.248607049609446 1 0.352208018302917 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24573551 chr22:24573539 synonymous SNV . 0 9 hm5C_associated_SNPs_37827 0 0 1 0 1 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_37314 DeepMRMD:1;iRNA_m5C:0.99953671215782 37315 chr3 32493946 32493946 1 + G A STAD 32493943 + 32493923 32493963 41 ATATGGCTGTCCTATAAGATCTCGTGTGTAACCCAGTCCAC ATATGGCTGTCCTATAAGATCTCATGTGTAACCCAGTCCAC < 41bp 1 0.567444555556415 1 0.0682444870471954 experiment 0.865110888887169 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32493943 chr3:32493946 synonymous SNV . 0 24 hm5C_associated_SNPs_37828 0 0 1 0 2 Ribosome 1 0.500191910009005 1 0.99961617998199 hm5C_site_37315 DeepMRMD:1;iRNA_m5C:0.99961617998199 37316 chr12 58121846 58121846 1 + G A STAD 58121832 + 58121812 58121852 41 CCTCAAAGTGCCACGTCTGACCCGTGCTGGACACGATCAGG CCTCAAAGTGCCACGTCTGACCCGTGCTGGACACAATCAGG < 41bp 1 0.542369851874386 1 0.107862144708633 experiment 0.915260296251228 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP2 ENSG00000135439 CDS Human protein_coding chr12:58121832 chr12:58121846 synonymous SNV . 0 35 hm5C_associated_SNPs_37829 0 0 0 0 0 exosome 1 0.500231616041021 1 0.999536767917958 hm5C_site_37316 DeepMRMD:1;iRNA_m5C:0.999536767917958 37317 chr2 202899989 202899989 1 + C A STAD 202899977 + 202899957 202899997 41 GGGCCTCAGATGGCAGGGGGCGTCCCGCCTTCCCCTTCTCA GGGCCTCAGATGGCAGGGGGCGTCCCGCCTTCACCTTCTCA < 41bp 1 0.153417000127802 1 0.128262490034103 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZD7 ENSG00000155760 CDS Human protein_coding chr2:202899977 chr2:202899989 nonsynonymous SNV 0.962 0 33 hm5C_associated_SNPs_37830 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_37317 DeepMRMD:1;iRNA_m5C:0.999536712157815 37318 chr3 4856237 4856237 1 + G A STAD 4856235 + 4856215 4856255 41 TAGGAGATGTACTCAGGAAGCCGTCCAAAGAGGTAAATTAA TAGGAGATGTACTCAGGAAGCCATCCAAAGAGGTAAATTAA < 41bp 1 0.0252146795963585 1 0.37159189581871 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4856235 chr3:4856237 synonymous SNV . 0 23 hm5C_associated_SNPs_37831 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643890887 1 0.999536712218225 hm5C_site_37318 DeepMRMD:1;iRNA_m5C:0.999536712218225 37319 chr1 26883502 26883502 1 + G A STAD 26883509 + 26883489 26883529 41 AAGCTATACCGTCGTGAGATCAAGCCACCCTTCAAGCCAGC AAGCTATACCGTCATGAGATCAAGCCACCCTTCAAGCCAGC < 41bp 1 0.203969207097739 1 0.414716452360153 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26883509 chr1:26883502 nonsynonymous SNV 0.993 3 14 hm5C_associated_SNPs_37832 0 0 1 0 1 Ribosome 1 0.500231437008561 1 0.999537125982879 hm5C_site_37319 DeepMRMD:1;iRNA_m5C:0.999537125982879 37320 chr1 154988858 154988858 1 + C T STAD 154988871 + 154988851 154988891 41 AGGCTTTCGCCAAGGAGGACCACCTGCAGCGCCACCTCAAA AGGCTTTTGCCAAGGAGGACCACCTGCAGCGCCACCTCAAA < 41bp 1 0.269975643254132 1 0.276586323976517 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154988871 chr1:154988858 synonymous SNV . 0 8 hm5C_associated_SNPs_37833 0 0 1 0 0 chromatin 1 0.500231785249126 1 0.999536429501748 hm5C_site_37320 DeepMRMD:1;iRNA_m5C:0.999536429501748 37321 chr5 176721919 176721919 1 + G A STAD 176721903 + 176721883 176721923 41 AGAAAGGCTGTGTGTCAGATCCTCTTCAGACATCTGGGAAA AGAAAGGCTGTGTGTCAGATCCTCTTCAGACATCTGAGAAA < 41bp 1 0.0459537837897683 1 0.0577418208122253 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176721903 chr5:176721919 nonsynonymous SNV 0.037 3 37 hm5C_associated_SNPs_37834 0 0 1 0 0 Nucleus 1 0.500231643921131 1 0.999536712157738 hm5C_site_37321 DeepMRMD:1;iRNA_m5C:0.999536712157738 37322 chr17 4856581 4856581 1 + G A STAD 4856570 + 4856550 4856590 41 CAAACTCACCCTTCCAGAAACTAAGCGTTGTGGATCAAGAA CAAACTCACCCTTCCAGAAACTAAGCGTTGTAGATCAAGAA < 41bp 1 0.151317528222293 1 0.219303041696548 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856570 chr17:4856581 synonymous SNV . 0 32 hm5C_associated_SNPs_37835 0 0 1 0 1 nucleus 1 0.500231643921477 1 0.999536712157045 hm5C_site_37322 DeepMRMD:1;iRNA_m5C:0.999536712157045 37323 chr8 1806214 1806214 1 + G T STAD 1806226 + 1806206 1806246 41 CCAGAAGCGGACAGACAGGCCCCATCCGCCCCTGAGACAGG CCAGAAGCTGACAGACAGGCCCCATCCGCCCCTGAGACAGG < 41bp 1 0.0830537865016616 1 0.0703998506069183 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1806226 chr8:1806214 synonymous SNV . 0 9 hm5C_associated_SNPs_37836 0 0 1 0 2 Nucleus 1 0.500231643923396 1 0.999536712153209 hm5C_site_37323 DeepMRMD:1;iRNA_m5C:0.999536712153209 37324 chr17 40936583 40936583 1 + C T STAD 40936572 + 40936552 40936592 41 CTCCGAGTGCCAGAATGCCGCGCAAATCTACCGCAAGGTCA CTCCGAGTGCCAGAATGCCGCGCAAATCTACTGCAAGGTCA < 41bp 1 0.660253565955794 1 0.152341693639755 experiment 0.679492868088413 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936572 chr17:40936583 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_37837 0 0 0 0 1 chromatin 1 0.500233056840952 1 0.999533886318095 hm5C_site_37324 DeepMRMD:1;iRNA_m5C:0.999533886318095 37325 chr7 69064844 69064844 1 + C T STAD 69064849 + 69064829 69064869 41 TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG TCCTCCGCCCCGTCCTGGCCCAGACCCCCGCGGAGGAAGCG < 41bp 1 0.179375048362572 1 0.0356172323226929 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064849 chr7:69064844 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_37838 0 0 0 0 0 Nucleus 1 0.500231643921147 1 0.999536712157706 hm5C_site_37325 DeepMRMD:1;iRNA_m5C:0.999536712157706 37326 chr9 131356530 131356530 1 + C T STAD 131356537 + 131356517 131356557 41 GTTTATGTTGTTCCGTGAAGCGAATGAACTACAGCAATGGA GTTTATGTTGTTCTGTGAAGCGAATGAACTACAGCAATGGA < 41bp 1 0.114148164225035 1 0.457136631011963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131356537 chr9:131356530 nonsynonymous SNV 0.879 4 14 hm5C_associated_SNPs_37840 0 0 1 0 1 Nucleus 1 0.500231650575884 1 0.999536698848232 hm5C_site_37326 DeepMRMD:1;iRNA_m5C:0.999536698848232 37327 chr16 24817979 24817979 1 + C T STAD 24817997 + 24817977 24818017 41 CACCATCTCAGCAGCAGCCACTCCATCAGCCAGCCATGAAG CATCATCTCAGCAGCAGCCACTCCATCAGCCAGCCATGAAG < 41bp 1 0.696225404642364 1 0.971848547458649 experiment 0.607549190715271 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24817997 chr16:24817979 nonsynonymous SNV 0.998 1 3 hm5C_associated_SNPs_37841 0 0 0 0 0 Nucleus 1 0.500231642243288 0.056302905082702 0.999536715513424 hm5C_site_37327 DeepMRMD:0.056302905082702;iRNA_m5C:0.999536715513424 37328 chr20 37076727 37076727 1 + G A STAD 37076732 + 37076712 37076752 41 TTTGCTCTTTTCTGCGCCTGCATTCGTAAGTGATCACGGGC TTTGCTCTTTTCTGCACCTGCATTCGTAAGTGATCACGGGC < 41bp 1 0.0383805332295664 1 0.0354434549808502 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA71E ENSG00000174365 ncRNA_exonic Human processed_transcript chr20:37076732 chr20:37076727 . . 0 16 hm5C_associated_SNPs_37842 0 0 1 0 0 unknown 1 0.500231643921109 1 0.999536712157782 hm5C_site_37328 DeepMRMD:1;iRNA_m5C:0.999536712157782 37329 chr19 52714705 52714705 1 + T A STAD 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCAACCCCCG < 41bp 1 0.415003938041549 1 0.0435898900032043 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714705 nonsynonymous SNV 0.994 4 34 hm5C_associated_SNPs_37843 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_37329 DeepMRMD:1;iRNA_m5C:0.999536712157815 37330 chr15 22999351 22999351 1 + G A STAD 22999347 + 22999327 22999367 41 TCCTTTCTGCAGCAAATTGCCATCGCAAGAGAGGGGGACCT TCCTTTCTGCAGCAAATTGCCATCACAAGAGAGGGGGACCT < 41bp 1 0.438792181033445 1 0.493313372135162 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22999347 chr15:22999351 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_37845 0 0 1 0 1 Cytosol 1 0.500231643939959 1 0.999536712120082 hm5C_site_37330 DeepMRMD:1;iRNA_m5C:0.999536712120082 37331 chr10 70723160 70723160 1 + G A STAD 70723167 + 70723147 70723187 41 GACATTCTCCTTTGCCATCCCTTTGATTGAGAAACTTCATG GACATTCTCCTTTACCATCCCTTTGATTGAGAAACTTCATG < 41bp 1 0.116523048214265 1 0.0421755611896515 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70723167 chr10:70723160 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_37846 0 0 1 0 1 Nucleus 1 0.500231643921085 1 0.999536712157829 hm5C_site_37331 DeepMRMD:1;iRNA_m5C:0.999536712157829 37332 chr7 101845106 101845106 1 + C T STAD 101845118 + 101845098 101845138 41 GCCAAGGCCGAAGAAACGGGCGGCGGGAAAGAGAAGGGCAG GCCAAGGCTGAAGAAACGGGCGGCGGGAAAGAGAAGGGCAG < 41bp 1 0.355061357965683 1 0.535694777965546 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101845118 chr7:101845106 synonymous SNV . 0 9 hm5C_associated_SNPs_37847 0 0 1 0 0 Exosome 1 0.500231643921093 0.928610444068908 0.999536712157815 hm5C_site_37332 DeepMRMD:0.928610444068908;iRNA_m5C:0.999536712157815 37333 chr9 137593103 137593103 1 + G A STAD 137593086 + 137593066 137593106 41 CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCGCAG CTCGACTGTAAAAAGAAGACCACCAAATTCCTCGACCACAG < 41bp 1 0.333809276793042 1 0.110694974660873 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137593086 chr9:137593103 nonsynonymous SNV 0.470 3 38 hm5C_associated_SNPs_37848 0 0 0 0 2 Nucleus 1 0.500231643921041 1 0.999536712157919 hm5C_site_37333 DeepMRMD:1;iRNA_m5C:0.999536712157919 37334 chr8 99168334 99168334 1 + G A STAD 99168348 + 99168328 99168368 41 CTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAG CTTTCTACTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAG < 41bp 1 0.22198666260884 1 0.404122918844223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control POP1 ENSG00000104356 CDS Human protein_coding chr8:99168348 chr8:99168334 nonsynonymous SNV 0.994 0 7 hm5C_associated_SNPs_37849 0 0 1 0 1 Mitochondrion 1 0.500231643921092 1 0.999536712157815 hm5C_site_37334 DeepMRMD:1;iRNA_m5C:0.999536712157815 37335 chr19 40718828 40718828 1 + C T STAD 40718840 + 40718820 40718860 41 AGAAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAG AGAAGGGATGAACGTGGGGGCCCAGCTCCACCCTGCAGAAG < 41bp 1 0.0918399979447835 1 0.142009139060974 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718840 chr19:40718828 stopgain 0.548 1 9 hm5C_associated_SNPs_37850 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_37335 DeepMRMD:1;iRNA_m5C:0.999536712157815 37336 chr19 40718828 40718828 1 + C T STAD 40718841 + 40718821 40718861 41 GAAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGG GAAGGGATGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGG < 41bp 1 0.0872102238017462 1 0.0862520337104797 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718841 chr19:40718828 stopgain 0.548 1 8 hm5C_associated_SNPs_37851 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921225 1 0.99953671215755 hm5C_site_37336 DeepMRMD:1;iRNA_m5C:0.99953671215755 37337 chr19 40718828 40718828 1 + C T STAD 40718842 + 40718822 40718862 41 AAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGGA AAGGGATGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGGA < 41bp 1 0.158477595975226 1 0.248277962207794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718842 chr19:40718828 stopgain 0.548 1 7 hm5C_associated_SNPs_37852 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_37337 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hippocampal atrophy 37338 chr8 90937493 90937493 1 + T C STAD 90937486 + 90937466 90937506 41 AGCAGTAGTATTGATAGGTTCTCATCCTAATCTGTCTTTTC AGCAGTAGTATTGATAGGTTCTCATCCCAATCTGTCTTTTC < 41bp 1 0.297780365786142 1 0.0643198788166046 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90937486 chr8:90937493 synonymous SNV . 0 28 hm5C_associated_SNPs_37853 0 0 1 0 0 Cytosol 1 0.500231642861568 1 0.999536714276865 hm5C_site_37338 DeepMRMD:1;iRNA_m5C:0.999536714276865 37339 chr8 90937493 90937493 1 + T C STAD 90937488 + 90937468 90937508 41 CAGTAGTATTGATAGGTTCTCATCCTAATCTGTCTTTTCTG CAGTAGTATTGATAGGTTCTCATCCCAATCTGTCTTTTCTG < 41bp 1 0.14922116737917 1 0.0931101739406586 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90937488 chr8:90937493 synonymous SNV . 0 26 hm5C_associated_SNPs_37854 0 0 1 0 0 Cytosol 1 0.50023165020889 1 0.999536699582221 hm5C_site_37339 DeepMRMD:1;iRNA_m5C:0.999536699582221 37340 chr8 90937493 90937493 1 + T C STAD 90937491 + 90937471 90937511 41 TAGTATTGATAGGTTCTCATCCTAATCTGTCTTTTCTGAAG TAGTATTGATAGGTTCTCATCCCAATCTGTCTTTTCTGAAG < 41bp 1 0.514412590482161 1 0.411385178565979 experiment 0.971174819035677 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90937491 chr8:90937493 synonymous SNV . 0 23 hm5C_associated_SNPs_37855 0 0 1 0 0 Cytosol 1 0.500232516774337 1 0.999534966451327 hm5C_site_37340 DeepMRMD:1;iRNA_m5C:0.999534966451327 37341 chr8 90937493 90937493 1 + T C STAD 90937492 + 90937472 90937512 41 AGTATTGATAGGTTCTCATCCTAATCTGTCTTTTCTGAAGG AGTATTGATAGGTTCTCATCCCAATCTGTCTTTTCTGAAGG < 41bp 1 0.144488597853608 1 0.153411358594894 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90937492 chr8:90937493 synonymous SNV . 0 22 hm5C_associated_SNPs_37856 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37341 DeepMRMD:1;iRNA_m5C:0.999536712157815 37342 chr8 90937493 90937493 1 + T C STAD 90937497 + 90937477 90937517 41 TGATAGGTTCTCATCCTAATCTGTCTTTTCTGAAGGATCAA TGATAGGTTCTCATCCCAATCTGTCTTTTCTGAAGGATCAA < 41bp 1 0.284355105254452 1 0.185324281454086 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90937497 chr8:90937493 synonymous SNV . 0 17 hm5C_associated_SNPs_37857 0 0 1 0 0 Cytosol 1 0.500263398233111 1 0.999473203533778 hm5C_site_37342 DeepMRMD:1;iRNA_m5C:0.999473203533778 37343 chr8 90937493 90937493 1 + T C STAD 90937501 + 90937481 90937521 41 AGGTTCTCATCCTAATCTGTCTTTTCTGAAGGATCAAGGGT AGGTTCTCATCCCAATCTGTCTTTTCTGAAGGATCAAGGGT < 41bp 1 0.059338805807465 1 0.0411260724067688 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90937501 chr8:90937493 synonymous SNV . 0 13 hm5C_associated_SNPs_37858 0 0 1 0 0 Cytosol 1 0.500231643921095 1 0.99953671215781 hm5C_site_37343 DeepMRMD:1;iRNA_m5C:0.99953671215781 37344 chr16 1818260 1818260 1 + A G STAD 1818253 + 1818233 1818273 41 CCCGTCCCGGGGGCATCATCCACGTGTATGGCGATGACAGC CCCGTCCCGGGGGCATCATCCACGTGTGTGGCGATGACAGC < 41bp 1 0.555501781318585 1 0.80134642124176 experiment 0.888996437362829 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1818253 chr16:1818260 nonsynonymous SNV 0.295 4 28 hm5C_associated_SNPs_37859 0 0 0 0 1 chromatin 1 0.500255278091789 0.39730715751648 0.999489443816422 hm5C_site_37344 DeepMRMD:0.39730715751648;iRNA_m5C:0.999489443816422 37345 chr12 31244687 31244687 1 + C T STAD 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATGTGGCCACTCGGCAGGCCGCGGGCAT < 41bp 1 0.292983530275172 1 0.0548415184020996 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244687 nonsynonymous SNV 0.253 0 17 hm5C_associated_SNPs_37860 0 0 1 0 1 Cytosol 1 0.500231650277005 1 0.99953669944599 hm5C_site_37345 DeepMRMD:1;iRNA_m5C:0.99953669944599 37346 chr7 76112200 76112200 1 + G A STAD 76112193 + 76112173 76112213 41 GAACTGGCCCCGTGTCAGGCCGCTACCGCCACTCCATGACC GAACTGGCCCCGTGTCAGGCCGCTACCACCACTCCATGACC < 41bp 1 0.397551689572041 1 0.300080239772797 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76112193 chr7:76112200 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_37861 0 0 1 0 0 Nucleus 1 0.500231690686429 1 0.999536618627143 hm5C_site_37346 DeepMRMD:1;iRNA_m5C:0.999536618627143 37347 chr22 41923392 41923392 1 + C T STAD 41923388 + 41923368 41923408 41 AGCCTCGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGC AGCCTCGCCACCTTGGGGGCCGGGTCATCATCACCAAGAGC < 41bp 1 0.325830485541647 1 0.486003339290619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41923388 chr22:41923392 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_37862 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37347 DeepMRMD:1;iRNA_m5C:0.999536712157815 37348 chr19 46887108 46887108 1 + C T STAD 46887105 + 46887085 46887125 41 CTCCTCAACATATTCGAGCTCAACGGTTTACCCTCGGAGAC CTCCTCAACATATTCGAGCTCAATGGTTTACCCTCGGAGAC < 41bp 1 0.378362163511455 1 0.160255581140518 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46887105 chr19:46887108 synonymous SNV . 0 24 hm5C_associated_SNPs_37863 0 0 1 0 3 Ribosome 1 0.500231643920539 1 0.999536712158922 hm5C_site_37348 DeepMRMD:1;iRNA_m5C:0.999536712158922 37349 chr8 142176445 142176445 1 + G A STAD 142176432 + 142176412 142176452 41 TGCCATGCCTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC TGCCATGCCTGAGCTGGCACCCAGGAACTCCTCACTCCGGC < 41bp 1 0.43129710970661 1 0.879295468330383 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142176432 chr8:142176445 synonymous SNV . 0 34 hm5C_associated_SNPs_37864 0 0 0 0 1 Nucleus 1 0.500231649565512 0.241409063339234 0.999536700868976 hm5C_site_37349 DeepMRMD:0.241409063339234;iRNA_m5C:0.999536700868976 37350 chr17 41570249 41570249 1 + G A STAD 41570239 + 41570219 41570259 41 GGAGCAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACCGG GGAGCAGGAGTCAGAGTCCCCCCAAAGACCAGAAGGACCGG < 41bp 1 0.496243597625835 1 0.578436315059662 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570239 chr17:41570249 nonsynonymous SNV 0.997 0 31 hm5C_associated_SNPs_37865 0 0 1 0 0 Cytosol 1 0.500231643921092 0.843127369880676 0.999536712157815 hm5C_site_37350 DeepMRMD:0.843127369880676;iRNA_m5C:0.999536712157815 37351 chr17 41570249 41570249 1 + G A STAD 41570240 + 41570220 41570260 41 GAGCAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACCGGG GAGCAGGAGTCAGAGTCCCCCCAAAGACCAGAAGGACCGGG < 41bp 1 0.350644009001265 1 0.795562386512756 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570240 chr17:41570249 nonsynonymous SNV 0.997 0 30 hm5C_associated_SNPs_37866 0 0 1 0 0 Cytosol 1 0.500231643922078 0.408875226974488 0.999536712155843 hm5C_site_37351 DeepMRMD:0.408875226974488;iRNA_m5C:0.999536712155843 37352 chr1 109642959 109642959 1 + C T STAD 109642953 + 109642933 109642973 41 TGGAGCGTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCC TGGAGCGTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCC < 41bp 1 0.655844649071367 1 0.664149522781372 experiment 0.688310701857265 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642953 chr1:109642959 . . 0 27 hm5C_associated_SNPs_37868 0 0 1 4 0 unknown 1 0.500231643502922 0.671700954437256 0.999536712994156 hm5C_site_37352 DeepMRMD:0.671700954437256;iRNA_m5C:0.999536712994156 37353 chr1 109642959 109642959 1 + C T STAD 109642957 + 109642937 109642977 41 GCGTGTTAGGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCC GCGTGTTAGGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCC < 41bp 1 0.275468413181548 1 0.598453879356384 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642957 chr1:109642959 . . 0 23 hm5C_associated_SNPs_37869 0 0 1 4 0 unknown 1 0.500231643921092 0.803092241287232 0.999536712157815 hm5C_site_37353 DeepMRMD:0.803092241287232;iRNA_m5C:0.999536712157815 37354 chr1 109642959 109642959 1 + C T STAD 109642965 + 109642945 109642985 41 GGCGAGTGCGTGCGCCCACCCCTGCGCCCCTCCTCCCGCTT GGCGAGTGCGTGCGTCCACCCCTGCGCCCCTCCTCCCGCTT < 41bp 1 0.175207877797721 1 0.198391199111938 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642965 chr1:109642959 . . 0 15 hm5C_associated_SNPs_37870 0 0 1 4 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_37354 DeepMRMD:1;iRNA_m5C:0.999536712157815 37355 chr1 109642959 109642959 1 + C T STAD 109642969 + 109642949 109642989 41 AGTGCGTGCGCCCACCCCTGCGCCCCTCCTCCCGCTTACAC AGTGCGTGCGTCCACCCCTGCGCCCCTCCTCCCGCTTACAC < 41bp 1 0.283690259734075 1 0.106959342956543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109642969 chr1:109642959 . . 0 11 hm5C_associated_SNPs_37871 0 0 1 4 0 unknown 1 0.500273997343884 1 0.999452005312232 hm5C_site_37355 DeepMRMD:1;iRNA_m5C:0.999452005312232 37356 chr6 116600397 116600397 1 + A G STAD 116600405 - 116600385 116600425 41 TGGAGGTAGAGGAGCAGCCGCCAGAAGGTGAAGAAATAGAA TGGAGGTAGAGGAGCAGCCGCCAGAAGGCGAAGAAATAGAA < 41bp 1 0.576142462903432 1 0.565822243690491 experiment 0.847715074193136 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TSPYL1 ENSG00000189241 CDS Human protein_coding chr6:116600405 chr6:116600397 synonymous SNV . 0 29 hm5C_associated_SNPs_37872 0 0 1 0 0 Ribosome 1 0.500231643921363 0.868355512619018 0.999536712157274 hm5C_site_37356 DeepMRMD:0.868355512619018;iRNA_m5C:0.999536712157274 37357 chr6 116600397 116600397 1 + A G STAD 116600411 - 116600391 116600431 41 AGCAGATGGAGGTAGAGGAGCAGCCGCCAGAAGGTGAAGAA AGCAGATGGAGGTAGAGGAGCAGCCGCCAGAAGGCGAAGAA < 41bp 1 0.57844424089117 1 0.590896368026733 experiment 0.84311151821766 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPYL1 ENSG00000189241 CDS Human protein_coding chr6:116600411 chr6:116600397 synonymous SNV . 0 35 hm5C_associated_SNPs_37873 0 0 1 0 0 Ribosome 1 0.500231643921092 0.818207263946534 0.999536712157815 hm5C_site_37357 DeepMRMD:0.818207263946534;iRNA_m5C:0.999536712157815 37358 chr1 36028833 36028833 1 + C T STAD 36028846 + 36028826 36028866 41 ACCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAG ACCTGACTGTTGAAGATGGGCCCCGGGAGATCCTGATCAAG < 41bp 1 0.301184831097097 1 0.060050368309021 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028846 chr1:36028833 synonymous SNV . 0 8 hm5C_associated_SNPs_37874 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_37358 DeepMRMD:1;iRNA_m5C:0.999536712157815 37359 chr1 36028833 36028833 1 + C T STAD 36028847 + 36028827 36028867 41 CCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGG CCTGACTGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGG < 41bp 1 0.318852135789213 1 0.238275438547134 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028847 chr1:36028833 synonymous SNV . 0 7 hm5C_associated_SNPs_37875 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_37359 DeepMRMD:1;iRNA_m5C:0.999536712157814 37360 chr1 36028833 36028833 1 + C T STAD 36028848 + 36028828 36028868 41 CTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGGA CTGACTGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGGA < 41bp 1 0.461533368096443 1 0.426038295030594 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028848 chr1:36028833 synonymous SNV . 0 6 hm5C_associated_SNPs_37876 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_37360 DeepMRMD:1;iRNA_m5C:0.999536712157815 37361 chr2 219609922 219609922 1 + C T STAD 219609940 + 219609920 219609960 41 CCCCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAA CCTCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAA < 41bp 1 0.136628828381836 1 0.0878056883811951 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219609940 chr2:219609922 synonymous SNV . 0 3 hm5C_associated_SNPs_37877 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37361 DeepMRMD:1;iRNA_m5C:0.999536712157815 37362 chr2 219609922 219609922 1 + C T STAD 219609942 + 219609922 219609962 41 CCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAAAC TCCTACCATCTATTTTGGCACTCGGGATGAGAGAGGTAAAC < 41bp 1 0.564405771100169 1 0.123150795698166 experiment 0.871188457799661 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219609942 chr2:219609922 synonymous SNV . 0 1 hm5C_associated_SNPs_37878 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37362 DeepMRMD:1;iRNA_m5C:0.999536712157815 37363 chr10 45486417 45486417 1 + G T STAD 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTTC < 41bp 1 0.0710740261296423 1 0.308285415172577 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486417 nonsynonymous SNV 0.997 1 40 hm5C_associated_SNPs_37879 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37363 DeepMRMD:1;iRNA_m5C:0.999536712157815 37364 chr5 6652020 6652020 1 + C T STAD 6652008 + 6651988 6652028 41 AAAGCCTATGCCACTGTTGGCGTGTACAATGGCGATTATGT AAAGCCTATGCCACTGTTGGCGTGTACAATGGTGATTATGT < 41bp 1 0.13419690372447 1 0.221647143363953 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRD5A1 ENSG00000145545 CDS Human protein_coding chr5:6652008 chr5:6652020 nonsynonymous SNV 0.001 4 33 hm5C_associated_SNPs_37880 0 0 0 0 1 Ribosome 1 0.500231643920668 1 0.999536712158665 hm5C_site_37364 DeepMRMD:1;iRNA_m5C:0.999536712158665 37365 chr2 220496734 220496734 1 + A G STAD 220496744 + 220496724 220496764 41 ACACTTAGTGAAAAAGCCCTCCCGGACGCAGGGCGGGAGGG ACACTTAGTGGAAAAGCCCTCCCGGACGCAGGGCGGGAGGG < 41bp 1 0.421369063610758 1 0.5221928358078 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220496744 chr2:220496734 nonsynonymous SNV 0.998 2 11 hm5C_associated_SNPs_37881 0 0 0 0 0 Cytosol 1 0.500231635290491 0.9556143283844 0.999536729419017 hm5C_site_37365 DeepMRMD:0.9556143283844;iRNA_m5C:0.999536729419017 37366 chr19 55994335 55994335 1 + G A STAD 55994334 + 55994314 55994354 41 AGCGCGTGCACACGGGCGAGCGGCCCTTCCGCTGCCCGCTC AGCGCGTGCACACGGGCGAGCAGCCCTTCCGCTGCCCGCTC < 41bp 1 0.452884558746925 1 0.608932018280029 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF628 ENSG00000197483 CDS Human protein_coding chr19:55994334 chr19:55994335 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_37882 0 0 0 0 0 exosome 1 0.500231643917263 0.782135963439942 0.999536712165474 hm5C_site_37366 DeepMRMD:0.782135963439942;iRNA_m5C:0.999536712165474 37367 chr1 116937732 116937732 1 + G T STAD 116937743 + 116937723 116937763 41 TCCTCGCAGGTTTCTGCCACCTCTTTCTGCCAGATGAACAG TCCTCGCAGTTTTCTGCCACCTCTTTCTGCCAGATGAACAG < 41bp 1 0.165917544246089 1 0.115855276584625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116937743 chr1:116937732 nonsynonymous SNV 0.989 5 10 hm5C_associated_SNPs_37883 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37367 DeepMRMD:1;iRNA_m5C:0.999536712157815 37368 chr3 47891514 47891514 1 + C T STAD 47891507 + 47891487 47891527 41 CAGCGAGCTGGCTGCACTTCCCCCCAGCGTACAGGAGGAGC CAGCGAGCTGGCTGCACTTCCCCCCAGTGTACAGGAGGAGC < 41bp 1 0.253900201520893 1 0.0920470952987671 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47891507 chr3:47891514 synonymous SNV . 0 28 hm5C_associated_SNPs_37884 0 0 1 0 0 Cytosol 1 0.500231643281626 1 0.999536713436749 hm5C_site_37368 DeepMRMD:1;iRNA_m5C:0.999536713436749 37369 chr19 45797635 45797635 1 + G A STAD 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG ATGACCCACAGAAACACCTACGTTTGCACAGAACGCCCGGG < 41bp 1 0.0429834708602203 1 0.0584037005901337 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797635 nonsynonymous SNV 0.999 4 8 hm5C_associated_SNPs_37885 0 0 1 0 2 Nucleus 1 0.500236298030363 1 0.999527403939274 hm5C_site_37369 DeepMRMD:1;iRNA_m5C:0.999527403939274 37370 chr6 27861580 27861580 1 + G T STAD 27861587 + 27861567 27861607 41 GCACGCCGTGTCCGAGGGCACAAAGGCCGTCACCAAGTACA GCACGCCGTGTCCTAGGGCACAAAGGCCGTCACCAAGTACA < 41bp 1 0.615302347147477 1 0.378643333911896 experiment 0.769395305705045 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HIST1H2BO ENSG00000196331 CDS Human other chr6:27861587 chr6:27861580 stopgain 0.996 0 14 hm5C_associated_SNPs_37886 0 0 1 0 0 exosome 1 0.500231723453282 1 0.999536553093437 hm5C_site_37370 DeepMRMD:1;iRNA_m5C:0.999536553093437 37371 chr1 45793585 45793585 1 + C T STAD 45793580 + 45793560 45793600 41 TCCTGGCCCGGCACAAGGGGCCAGGCCTGCAGCACGTGGGG TCCTGGCCCGGCACAAGGGGCCAGGTCTGCAGCACGTGGGG < 41bp 1 0.296196742880008 1 0.35482382774353 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HPDL ENSG00000186603 CDS Human protein_coding chr1:45793580 chr1:45793585 synonymous SNV . 0 26 hm5C_associated_SNPs_37887 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_37371 DeepMRMD:1;iRNA_m5C:0.999536712157815 37372 chr1 45793585 45793585 1 + C T STAD 45793581 + 45793561 45793601 41 CCTGGCCCGGCACAAGGGGCCAGGCCTGCAGCACGTGGGGC CCTGGCCCGGCACAAGGGGCCAGGTCTGCAGCACGTGGGGC < 41bp 1 0.597952340952159 1 0.688352167606354 experiment 0.804095318095682 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HPDL ENSG00000186603 CDS Human protein_coding chr1:45793581 chr1:45793585 synonymous SNV . 0 25 hm5C_associated_SNPs_37888 0 0 0 0 0 exosome 1 0.500231643828246 0.623295664787292 0.999536712343508 hm5C_site_37372 DeepMRMD:0.623295664787292;iRNA_m5C:0.999536712343508 37373 chr21 47754538 47754538 1 + A G STAD 47754537 + 47754517 47754557 41 GTTCACAGTCAGTGACCACCCACCAGAACAGCGTGGGATGT GTTCACAGTCAGTGACCACCCGCCAGAACAGCGTGGGATGT < 41bp 1 0.68040872134203 1 0.601294100284576 experiment 0.63918255731594 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47754537 chr21:47754538 synonymous SNV . 0 22 hm5C_associated_SNPs_37889 0 0 0 0 0 Exosome 1 0.500231647513479 0.797411799430848 0.999536704973042 hm5C_site_37373 DeepMRMD:0.797411799430848;iRNA_m5C:0.999536704973042 37374 chr2 109367742 109367742 1 + T C STAD 109367752 + 109367732 109367772 41 CACATAATGGTAGTCTTCAGCACCTTACTTGGCTTGGCTTA CACATAATGGCAGTCTTCAGCACCTTACTTGGCTTGGCTTA < 41bp 1 0.306409127046486 1 0.31192934513092 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109367752 chr2:109367742 synonymous SNV . 0 11 hm5C_associated_SNPs_37890 0 0 0 0 1 Nucleus 1 0.500230414267697 1 0.999539171464606 hm5C_site_37374 DeepMRMD:1;iRNA_m5C:0.999539171464606 37375 chr8 145736269 145736269 1 + G C STAD 145736271 + 145736251 145736291 41 ATGCGCTGCAGCCAGCTGGCCCCCAGGGCCCTGCAGGTGAG ATGCGCTGCAGCCAGCTGCCCCCCAGGGCCCTGCAGGTGAG < 41bp 1 0.431739060822495 1 0.302342414855957 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736271 chr8:145736269 nonsynonymous SNV 0.986 4 19 hm5C_associated_SNPs_37891 0 0 1 0 1 Ribosome 1 0.500231643921806 1 0.999536712156389 hm5C_site_37375 DeepMRMD:1;iRNA_m5C:0.999536712156389 37376 chr6 44116537 44116537 1 + T G STAD 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCGCTCCATCCGAGGCTTCATC < 41bp 1 0.119766578787391 1 0.753270506858826 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116537 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_37892 0 0 1 0 1 Ribosome 1 0.500231643905731 0.493458986282348 0.999536712188538 hm5C_site_37376 DeepMRMD:0.493458986282348;iRNA_m5C:0.999536712188538 37377 chr10 75548519 75548519 1 + G A STAD 75548529 + 75548509 75548549 41 ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT ACCCACCAGTACCTGAGCAGCTACAGCTCCGAATTGCTTTT < 41bp 1 0.574914522600119 1 0.405554354190826 experiment 0.850170954799763 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75548529 chr10:75548519 synonymous SNV . 0 11 hm5C_associated_SNPs_37893 0 0 0 0 2 Cytosol 1 0.500231806116706 1 0.999536387766589 hm5C_site_37377 DeepMRMD:1;iRNA_m5C:0.999536387766589 37378 chr22 26422846 26422846 1 + G A STAD 26422843 + 26422823 26422863 41 GGCAGTGACGAGGGAAACCTCTCGCTGAGGGTTGGGGCAAA GGCAGTGACGAGGGAAACCTCTCACTGAGGGTTGGGGCAAA < 41bp 1 0.28740693193554 1 0.530221045017242 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26422843 chr22:26422846 synonymous SNV . 0 24 hm5C_associated_SNPs_37894 0 0 0 0 0 chromatin 1 0.500231643921092 0.939557909965516 0.999536712157815 hm5C_site_37378 DeepMRMD:0.939557909965516;iRNA_m5C:0.999536712157815 37379 chr11 33667279 33667279 1 + G A STAD 33667280 + 33667260 33667300 41 ACATTGACAGAGTTCCTGAGCCCCGGGGCTATTCCAGGTCT ACATTGACAGAGTTCCTGAACCCCGGGGCTATTCCAGGTCT < 41bp 1 0.305327860219839 1 0.0921890437602997 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33667280 chr11:33667279 synonymous SNV . 0 20 hm5C_associated_SNPs_37895 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37379 DeepMRMD:1;iRNA_m5C:0.999536712157815 37380 chr13 94679997 94679997 1 + A T STAD 94679996 + 94679976 94680016 41 TCTGCAGGTCAGCCCAACCCCAGGGTGTATCCGTGCCCTCA TCTGCAGGTCAGCCCAACCCCTGGGTGTATCCGTGCCCTCA < 41bp 1 0.690219121390371 1 0.480822652578354 experiment 0.619561757219258 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPC6 ENSG00000183098 CDS Human protein_coding chr13:94679996 chr13:94679997 synonymous SNV . 0 22 hm5C_associated_SNPs_37896 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37380 DeepMRMD:1;iRNA_m5C:0.999536712157815 37381 chr19 13004403 13004403 1 + C T STAD 13004401 + 13004381 13004421 41 CGATGAGTGTCCAGTCCTCCCTCGTCATGCACCCTATCTAT CGATGAGTGTCCAGTCCTCCCTTGTCATGCACCCTATCTAT < 41bp 1 0.585546976365148 1 0.0280571281909943 experiment 0.828906047269704 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13004401 chr19:13004403 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_37897 0 0 1 0 1 Ribosome 1 0.500231644128832 1 0.999536711742336 hm5C_site_37381 DeepMRMD:1;iRNA_m5C:0.999536711742336 37382 chr5 137680803 137680803 1 + G C STAD 137680783 + 137680763 137680803 41 GCTGGCAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGG GCTGGCAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGC < 41bp 1 0.228219500671852 1 0.422744512557983 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680783 chr5:137680803 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_37898 0 0 1 0 0 chromatin 1 0.500231643921096 1 0.999536712157809 hm5C_site_37382 DeepMRMD:1;iRNA_m5C:0.999536712157809 37383 chr5 137680803 137680803 1 + G C STAD 137680784 + 137680764 137680804 41 CTGGCAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGA CTGGCAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGCA < 41bp 1 0.0803791512857102 1 0.120738536119461 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680784 chr5:137680803 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_37899 0 0 1 0 0 chromatin 1 0.500231644070522 1 0.999536711858956 hm5C_site_37383 DeepMRMD:1;iRNA_m5C:0.999536711858956 37384 chr5 137680803 137680803 1 + G C STAD 137680785 + 137680765 137680805 41 TGGCAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGAC TGGCAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGCAC < 41bp 1 0.401118489424031 1 0.653673529624939 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680785 chr5:137680803 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_37900 0 0 1 0 0 chromatin 1 0.500231643921075 0.692652940750122 0.999536712157849 hm5C_site_37384 DeepMRMD:0.692652940750122;iRNA_m5C:0.999536712157849 37385 chr5 137680803 137680803 1 + G C STAD 137680787 + 137680767 137680807 41 GCAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTC GCAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGCACTC < 41bp 1 0.262886553237884 1 0.0740570425987244 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680787 chr5:137680803 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_37901 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_37385 DeepMRMD:1;iRNA_m5C:0.999536712157815 37386 chr5 137680803 137680803 1 + G C STAD 137680788 + 137680768 137680808 41 CAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCC CAGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGCACTCC < 41bp 1 0.19002602650123 1 0.200404971837997 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680788 chr5:137680803 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_37902 0 0 1 0 0 chromatin 1 0.500231643920898 1 0.999536712158204 hm5C_site_37386 DeepMRMD:1;iRNA_m5C:0.999536712158204 37387 chr5 137680803 137680803 1 + G C STAD 137680789 + 137680769 137680809 41 AGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCCC AGCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGCACTCCC < 41bp 1 0.0904749438771086 1 0.0932354331016541 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680789 chr5:137680803 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_37903 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37387 DeepMRMD:1;iRNA_m5C:0.999536712157815 37388 chr5 137680803 137680803 1 + G C STAD 137680790 + 137680770 137680810 41 GCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCCCA GCCGGTGTGGCGGCCCGCCCCCTCCAAGCTGTGCACTCCCA < 41bp 1 0.0951022291533899 1 0.265716403722763 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680790 chr5:137680803 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_37904 0 0 1 0 0 chromatin 1 0.500231643920825 1 0.99953671215835 hm5C_site_37388 DeepMRMD:1;iRNA_m5C:0.99953671215835 37389 chr5 137680803 137680803 1 + G C STAD 137680793 + 137680773 137680813 41 GGTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCCCATAA GGTGTGGCGGCCCGCCCCCTCCAAGCTGTGCACTCCCATAA < 41bp 1 0.51215937477519 1 0.826316356658936 experiment 0.97568125044962 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680793 chr5:137680803 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_37906 0 0 1 0 0 chromatin 1 0.500231643921092 0.347367286682128 0.999536712157815 hm5C_site_37389 DeepMRMD:0.347367286682128;iRNA_m5C:0.999536712157815 37390 chr5 137680803 137680803 1 + G C STAD 137680794 + 137680774 137680814 41 GTGTGGCGGCCCGCCCCCTCCAAGCTGTGGACTCCCATAAA GTGTGGCGGCCCGCCCCCTCCAAGCTGTGCACTCCCATAAA < 41bp 1 0.641796948998617 1 0.61065936088562 experiment 0.716406102002766 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM53C ENSG00000120709 CDS Human protein_coding chr5:137680794 chr5:137680803 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_37907 0 0 1 0 0 chromatin 1 0.500231643921228 0.77868127822876 0.999536712157545 hm5C_site_37390 DeepMRMD:0.77868127822876;iRNA_m5C:0.999536712157545 37391 chr17 37075007 37075007 1 + G A STAD 37075006 + 37074986 37075026 41 CGGCGACACGGGGATGCTGCCGGCCAACTACGTGGAGGCCA CGGCGACACGGGGATGCTGCCAGCCAACTACGTGGAGGCCA < 41bp 1 0.591564564528038 1 0.12993785738945 experiment 0.816870870943925 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LASP1 ENSG00000002834 CDS Human protein_coding chr17:37075006 chr17:37075007 synonymous SNV . 0 22 hm5C_associated_SNPs_37908 0 0 1 0 0 Cytosol 1 0.50023164397413 1 0.99953671205174 hm5C_site_37391 DeepMRMD:1;iRNA_m5C:0.99953671205174 37392 chr16 28844195 28844195 1 + G A STAD 28844200 + 28844180 28844220 41 AACTGAGAAAGTTTGGGGCCCAGTTTAAGGTGAGAGAAGAG AACTGAGAAAGTTTGAGGCCCAGTTTAAGGTGAGAGAAGAG < 41bp 1 0.0666935587221095 1 0.251767992973328 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28844200 chr16:28844195 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_37909 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37392 DeepMRMD:1;iRNA_m5C:0.999536712157815 37393 chr5 140573656 140573656 1 + G A STAD 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATCAACGCGGACAACAGCCACCTGTTCGCCCTCAGGTC < 41bp 1 0.256231071679375 1 0.190711885690689 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573656 nonsynonymous SNV 0.160 4 19 hm5C_associated_SNPs_37910 0 0 0 0 0 exosome 1 0.500231643927193 1 0.999536712145615 hm5C_site_37393 DeepMRMD:1;iRNA_m5C:0.999536712145615 37394 chr2 27440776 27440776 1 + G T STAD 27440789 + 27440769 27440809 41 ACCCCGAGGCCCTCACCGATCCCTCCTACAAGGCACAGATC ACCCCGATGCCCTCACCGATCCCTCCTACAAGGCACAGATC < 41bp 1 0.0373320507642073 1 0.207567393779755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27440789 chr2:27440776 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_37911 0 0 1 0 0 Exosome 1 0.500231646111011 1 0.999536707777979 hm5C_site_37394 DeepMRMD:1;iRNA_m5C:0.999536707777979 37395 chr1 229770731 229770731 1 + G A STAD 229770748 + 229770728 229770768 41 TTCGATGTTGCCAGGGCATCCTGTCGACACCTGCCCTGGCT TTCAATGTTGCCAGGGCATCCTGTCGACACCTGCCCTGGCT < 41bp 1 0.419655827519867 1 0.609300434589386 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control URB2 ENSG00000135763 CDS Human protein_coding chr1:229770748 chr1:229770731 nonsynonymous SNV 0.897 1 4 hm5C_associated_SNPs_37912 0 0 1 0 1 Nucleus 1 0.500231643921092 0.781399130821228 0.999536712157817 hm5C_site_37395 DeepMRMD:0.781399130821228;iRNA_m5C:0.999536712157817 37396 chr17 74557778 74557778 1 + T C STAD 74557758 + 74557738 74557778 41 TCCCTGTCTGAAAATCTGGACTGAGGGAAATAATCTATTCT TCCCTGTCTGAAAATCTGGACTGAGGGAAATAATCTATTCC < 41bp 1 0.318986188427417 1 0.119896858930588 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD1A ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74557758 chr17:74557778 . . 0 41 hm5C_associated_SNPs_37913 0 0 1 0 0 unknown 1 0.500231643921139 1 0.999536712157723 hm5C_site_37396 DeepMRMD:1;iRNA_m5C:0.999536712157723 37397 chr17 74557778 74557778 1 + T C STAD 74557772 + 74557752 74557792 41 TCTGGACTGAGGGAAATAATCTATTCTGAGGCTTAAGGGTT TCTGGACTGAGGGAAATAATCTATTCCGAGGCTTAAGGGTT < 41bp 1 0.238781646447442 1 0.115087062120438 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD1A ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74557772 chr17:74557778 . . 0 27 hm5C_associated_SNPs_37914 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_37397 DeepMRMD:1;iRNA_m5C:0.999536712157815 37398 chr17 74557778 74557778 1 + T C STAD 74557777 + 74557757 74557797 41 ACTGAGGGAAATAATCTATTCTGAGGCTTAAGGGTTTGGCT ACTGAGGGAAATAATCTATTCCGAGGCTTAAGGGTTTGGCT < 41bp 1 0.320949880833399 1 0.475692451000214 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD1A ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74557777 chr17:74557778 . . 0 22 hm5C_associated_SNPs_37915 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_37398 DeepMRMD:1;iRNA_m5C:0.999536712157815 37399 chr1 228468282 228468282 1 + G A STAD 228468289 + 228468269 228468309 41 TCCGCAGAGGAGCGCGGCACCCTGGCCCTGCAGTGTGAAGT TCCGCAGAGGAGCACGGCACCCTGGCCCTGCAGTGTGAAGT < 41bp 1 0.0461444708169927 1 0.0487765371799469 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228468289 chr1:228468282 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_37916 0 0 0 0 1 Ribosome 1 0.500231643921053 1 0.999536712157894 hm5C_site_37399 DeepMRMD:1;iRNA_m5C:0.999536712157894 37400 chr14 58669640 58669640 1 + C T STAD 58669641 + 58669621 58669661 41 GATAAAAAGAGCTGGGATGCCTAAGGTATTTAAAAAAAAAT GATAAAAAGAGCTGGGATGTCTAAGGTATTTAAAAAAAAAT < 41bp 1 0.461913787704358 1 0.709139585494995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58669641 chr14:58669640 nonsynonymous SNV 0.933 1 20 hm5C_associated_SNPs_37917 0 0 1 0 2 Ribosome 1 0.500231630551771 0.58172082901001 0.999536738896459 hm5C_site_37400 DeepMRMD:0.58172082901001;iRNA_m5C:0.999536738896459 37401 chr4 183696226 183696226 1 + A G STAD 183696207 + 183696187 183696227 41 CCGACGGTTGCCAAAAGAAACATGACTTTGCCTGGCGAGAA CCGACGGTTGCCAAAAGAAACATGACTTTGCCTGGCGAGGA < 41bp 1 0.365163444959239 1 0.182917058467865 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TENM3 ENSG00000218336 CDS Human protein_coding chr4:183696207 chr4:183696226 nonsynonymous SNV 0.938 1 40 hm5C_associated_SNPs_37918 0 0 1 0 0 nucleus 1 0.500231646589441 1 0.999536706821119 hm5C_site_37401 DeepMRMD:1;iRNA_m5C:0.999536706821119 37402 chr22 22025326 22025326 1 + G A STAD 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCTACCCAGTCTGCACTCCCAATGGCATCGT < 41bp 1 0.577388890612934 1 0.358881682157516 experiment 0.845222218774132 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025326 nonsynonymous SNV 0.493 1 31 hm5C_associated_SNPs_37919 0 0 1 0 2 Cytosol 1 0.50023164405477 1 0.999536711890459 hm5C_site_37402 DeepMRMD:1;iRNA_m5C:0.999536711890459 37403 chr1 203819736 203819736 1 + C T STAD 203819733 + 203819713 203819753 41 TAAGGCAGTGGAGATGCACGCTGCTGTCATTGCCGCTGTGA TAAGGCAGTGGAGATGCACGCTGTTGTCATTGCCGCTGTGA < 41bp 1 0.506165466388512 1 0.147245705127716 experiment 0.987669067222975 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203819733 chr1:203819736 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_37920 0 0 1 0 2 Nucleus 1 0.500231643899067 1 0.999536712201866 hm5C_site_37403 DeepMRMD:1;iRNA_m5C:0.999536712201866 37404 chr3 49842011 49842011 1 + G A STAD 49842020 + 49842000 49842040 41 CCACCATCCACGGCCCAAGTCCACCCCAGACGCCTGCCTGG CCACCATCCACAGCCCAAGTCCACCCCAGACGCCTGCCTGG < 41bp 1 0.135164984719127 1 0.102292150259018 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM212A ENSG00000185614 CDS Human protein_coding chr3:49842020 chr3:49842011 nonsynonymous SNV 0.700 4 12 hm5C_associated_SNPs_37921 0 0 0 0 0 exosome 1 0.500231643925017 1 0.999536712149965 hm5C_site_37404 DeepMRMD:1;iRNA_m5C:0.999536712149965 37405 chr3 38287635 38287635 1 + C T STAD 38287619 + 38287599 38287639 41 CTCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTCAGCC CTCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTTAGCC < 41bp 1 0.416852334172717 1 0.0893209874629974 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38287619 chr3:38287635 stopgain 1.000 0 37 hm5C_associated_SNPs_37922 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37405 DeepMRMD:1;iRNA_m5C:0.999536712157815 37406 chr17 80684826 80684826 1 + T C STAD 80684806 + 80684786 80684826 41 AGCAGAGGATTCCTCTGGGCCGGTGATTTTTGACCCAGCTT AGCAGAGGATTCCTCTGGGCCGGTGATTTTTGACCCAGCTC < 41bp 1 0.47547274593904 1 0.471610933542252 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80684806 chr17:80684826 nonsynonymous SNV 0.423 4 41 hm5C_associated_SNPs_37923 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37406 DeepMRMD:1;iRNA_m5C:0.999536712157815 37407 chr20 37078014 37078014 1 + C T STAD 37078022 + 37078002 37078042 41 CCCTTGTATACACCTGCATTCAAAAATGATCACGGGCTGCC CCCTTGTATACATCTGCATTCAAAAATGATCACGGGCTGCC < 41bp 1 0.490155152746124 1 0.498522639274597 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA60 ENSG00000199266 ncRNA_exonic Human snoRNA chr20:37078022 chr20:37078014 . . 0 13 hm5C_associated_SNPs_37924 0 0 1 0 0 unknown 1 0.500231643920789 1 0.999536712158422 hm5C_site_37407 DeepMRMD:1;iRNA_m5C:0.999536712158422 37408 chr11 61632650 61632650 1 + A G STAD 61632668 + 61632648 61632688 41 CAACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTG CAGCTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTG < 41bp 1 0.354172989229734 1 0.169890880584717 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632668 chr11:61632650 nonsynonymous SNV 0.786 2 3 hm5C_associated_SNPs_37925 0 0 1 0 2 Ribosome 1 0.498723467326192 1 1 hm5C_site_37408 DeepMRMD:1;iRNA_m5C:1 37409 chr11 61632650 61632650 1 + A G STAD 61632670 + 61632650 61632690 41 ACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC GCTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC < 41bp 1 0.566378899498093 1 0.337538242340088 experiment 0.867242201003814 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632670 chr11:61632650 nonsynonymous SNV 0.786 2 1 hm5C_associated_SNPs_37926 0 0 1 0 2 Ribosome 1 0.500231584469247 1 0.999536831061507 hm5C_site_37409 DeepMRMD:1;iRNA_m5C:0.999536831061507 37410 chr3 184042123 184042123 1 + T C STAD 184042134 + 184042114 184042154 41 AGAGATGGATGAAGCTGCTACGGTGAGAGAAAACCCACTAT AGAGATGGACGAAGCTGCTACGGTGAGAGAAAACCCACTAT < 41bp 1 0.345168445240072 1 0.491104751825333 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042134 chr3:184042123 synonymous SNV . 0 10 hm5C_associated_SNPs_37927 0 0 1 0 1 Nucleus 1 0.5002316439211 1 0.9995367121578 hm5C_site_37410 DeepMRMD:1;iRNA_m5C:0.9995367121578 37411 chr19 50285901 50285901 1 + C A STAD 50285882 + 50285862 50285902 41 TGACCTGGCCAGCCGCAACCCCACCTTCATGTGCCTGGCCC TGACCTGGCCAGCCGCAACCCCACCTTCATGTGCCTGGCAC < 41bp 1 0.25478364747461 1 0.218733340501785 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50285882 chr19:50285901 synonymous SNV . 0 40 hm5C_associated_SNPs_37928 0 0 1 0 1 Ribosome 1 0.500231643921169 1 0.999536712157662 hm5C_site_37411 DeepMRMD:1;iRNA_m5C:0.999536712157662 37412 chr7 33014900 33014900 1 + T G STAD 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCCCCCGAGGTGCCCTCG < 41bp 1 0.511740594579271 1 0.828863561153412 experiment 0.976518810841458 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014900 nonsynonymous SNV 0.955 0 33 hm5C_associated_SNPs_37929 0 0 0 0 1 Ribosome 1 0.5002316439428 0.342272877693176 0.9995367121144 hm5C_site_37412 DeepMRMD:0.342272877693176;iRNA_m5C:0.9995367121144 37413 chr7 33014900 33014900 1 + T G STAD 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCCCCCGAGGTGCCCTCGGACC < 41bp 1 0.0950791105532655 1 0.0939432680606842 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014900 nonsynonymous SNV 0.955 0 29 hm5C_associated_SNPs_37930 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37413 DeepMRMD:1;iRNA_m5C:0.999536712157815 37414 chr5 137523046 137523046 1 + C T STAD 137523065 + 137523045 137523085 41 CCTACGCTCACGGCGTTCCCCTTTACTCAAATCTGGGCCTT CTTACGCTCACGGCGTTCCCCTTTACTCAAATCTGGGCCTT < 41bp 1 0.494065623342386 1 0.188207715749741 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF20A ENSG00000112984 CDS Human protein_coding chr5:137523065 chr5:137523046 synonymous SNV . 0 2 hm5C_associated_SNPs_37931 0 0 1 0 0 Nucleus 1 0.500231643923245 1 0.99953671215351 hm5C_site_37414 DeepMRMD:1;iRNA_m5C:0.99953671215351 37415 chr8 11643642 11643642 1 + C T STAD 11643658 + 11643638 11643678 41 CTACCAGAAAGAACAGTGCCCTGCTGGCCACCAGGTCATGA CTACTAGAAAGAACAGTGCCCTGCTGGCCACCAGGTCATGA < 41bp 1 0.443144316260722 1 0.0411266982555389 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11643658 chr8:11643642 stopgain 0.985 1 5 hm5C_associated_SNPs_37932 0 0 1 0 0 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_37415 DeepMRMD:1;iRNA_m5C:0.99953671215782 37416 chr4 6596387 6596387 1 + T G STAD 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACGTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG < 41bp 1 0.196233069535304 1 0.0292437374591827 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596387 nonsynonymous SNV 0.844 4 5 hm5C_associated_SNPs_37933 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_37416 DeepMRMD:1;iRNA_m5C:0.999536712157814 37417 chr8 1851473 1851473 1 + C T STAD 1851453 + 1851433 1851473 41 CCTGTTGCTTGTAGGACATGCTGAAGAACACCTCCAAAGGC CCTGTTGCTTGTAGGACATGCTGAAGAACACCTCCAAAGGT < 41bp 1 0.646462579355323 1 0.589993298053741 experiment 0.707074841289353 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1851453 chr8:1851473 synonymous SNV . 0 41 hm5C_associated_SNPs_37935 0 0 1 0 1 Nucleus 1 0.500231643793522 0.820013403892518 0.999536712412957 hm5C_site_37417 DeepMRMD:0.820013403892518;iRNA_m5C:0.999536712412957 37418 chr16 69353359 69353359 1 + A C STAD 69353363 + 69353343 69353383 41 AAATCCTACCTGGCCAAAGCCGTGGCAACAGAGGCCAACAA AAATCCTACCTGGCCACAGCCGTGGCAACAGAGGCCAACAA < 41bp 1 0.602566190512395 1 0.762495696544647 experiment 0.79486761897521 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69353363 chr16:69353359 nonsynonymous SNV 0.990 5 17 hm5C_associated_SNPs_37936 0 0 1 0 2 Cytosol 1 0.500231643807423 0.475008606910706 0.999536712385155 hm5C_site_37418 DeepMRMD:0.475008606910706;iRNA_m5C:0.999536712385155 37419 chr11 831623 831623 1 + C T STAD 831625 + 831605 831645 41 AAGGCTCTGACAACAGCCCGCCTGCCTGGGCCCACCTGCTG AAGGCTCTGACAACAGCCTGCCTGCCTGGGCCCACCTGCTG < 41bp 1 0.0975338776469112 1 0.0420100092887878 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831625 chr11:831623 nonsynonymous SNV 0.002 1 19 hm5C_associated_SNPs_37937 0 0 1 1 1 Cytosol 1 0.500231643921098 1 0.999536712157805 hm5C_site_37419 DeepMRMD:1;iRNA_m5C:0.999536712157805 37420 chr12 51117073 51117073 1 + G A STAD 51117087 + 51117067 51117107 41 CCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATG CCTCACAGCCACGCTGCCCACTGTCCGAATGATTGTTGATG < 41bp 1 0.113707975644686 1 0.073113739490509 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51117087 chr12:51117073 synonymous SNV . 0 7 hm5C_associated_SNPs_37938 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37420 DeepMRMD:1;iRNA_m5C:0.999536712157815 37421 chr19 16204371 16204371 1 + A G STAD 16204363 + 16204343 16204383 41 CAGTATTCTGAAAAGGAGGACAAATATGAAGAAGAAATTAA CAGTATTCTGAAAAGGAGGACAAATATGGAGAAGAAATTAA < 41bp 1 0.0515819729325548 1 0.210107862949371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM4 ENSG00000167460 CDS Human protein_coding chr19:16204363 chr19:16204371 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_37942 0 0 1 0 2 Ribosome 1 0.500231643921103 1 0.999536712157793 hm5C_site_37421 DeepMRMD:1;iRNA_m5C:0.999536712157793 37422 chr19 4793212 4793212 1 + G A STAD 4793215 + 4793195 4793235 41 CTACGTGCTTCAGGACCGGGCCGCCAAAGGCAGCCTGGGCA CTACGTGCTTCAGGACCAGGCCGCCAAAGGCAGCCTGGGCA < 41bp 1 0.133257159218843 1 0.123718231916428 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FEM1A ENSG00000141965 CDS Human protein_coding chr19:4793215 chr19:4793212 nonsynonymous SNV 0.935 0 18 hm5C_associated_SNPs_37943 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37422 DeepMRMD:1;iRNA_m5C:0.999536712157815 37423 chr13 21205209 21205209 1 + G C STAD 21205223 + 21205203 21205243 41 AGTGCAGCTGCAACCAATCTCTCAGCCCTGTATTATATGGT AGTGCACCTGCAACCAATCTCTCAGCCCTGTATTATATGGT < 41bp 1 0.30108547599207 1 0.279334843158722 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFT88 ENSG00000032742 CDS Human protein_coding chr13:21205223 chr13:21205209 nonsynonymous SNV 0.998 4 7 hm5C_associated_SNPs_37944 0 0 0 0 2 Cytosol 1 0.500231586584648 1 0.999536826830705 hm5C_site_37423 DeepMRMD:1;iRNA_m5C:0.999536826830705 37424 chr11 114273598 114273598 1 + A G STAD 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAAGATGTCAGTTTGTCATATCCCCAACATCGTGTTG < 41bp 1 0.330752647292677 1 0.133279114961624 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273598 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_37945 0 0 1 0 3 Cytosol 1 0.500231278750664 1 0.999537442498671 hm5C_site_37424 DeepMRMD:1;iRNA_m5C:0.999537442498671 37425 chr11 114273598 114273598 1 + A G STAD 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT AGATGTCAGTTTGTCATATCCCCAACATCGTGTTGGAAATT < 41bp 1 0.643558483342373 1 0.188105940818787 experiment 0.712883033315254 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273598 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_37946 0 0 1 0 3 Cytosol 1 0.500231643063803 1 0.999536713872395 hm5C_site_37425 DeepMRMD:1;iRNA_m5C:0.999536713872395 37426 chr11 114273598 114273598 1 + A G STAD 114273590 + 114273570 114273610 41 GATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC GATGTCAGTTTGTCATATCCCCAACATCGTGTTGGAAATTC < 41bp 1 0.348216429727321 1 0.302353709936142 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273590 chr11:114273598 nonsynonymous SNV 1.000 0 29 hm5C_associated_SNPs_37947 0 0 1 0 3 Cytosol 1 0.500232341834005 1 0.99953531633199 hm5C_site_37426 DeepMRMD:1;iRNA_m5C:0.99953531633199 37427 chr11 114273598 114273598 1 + A G STAD 114273594 + 114273574 114273614 41 TCAGTTTGTCATATCCCCAACATCATGTTGGAAATTCAAGC TCAGTTTGTCATATCCCCAACATCGTGTTGGAAATTCAAGC < 41bp 1 0.305817882091759 1 0.0711756944656372 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273594 chr11:114273598 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_37949 0 0 1 0 3 Cytosol 1 0.500231542546538 1 0.999536914906925 hm5C_site_37427 DeepMRMD:1;iRNA_m5C:0.999536914906925 37428 chr19 36216189 36216189 1 + C T STAD 36216190 + 36216170 36216210 41 TCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG TCACCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTG < 41bp 1 0.0597182149469713 1 0.112320005893707 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216190 chr19:36216189 synonymous SNV . 0 20 hm5C_associated_SNPs_37952 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37428 DeepMRMD:1;iRNA_m5C:0.999536712157815 37429 chr19 36216189 36216189 1 + C T STAD 36216191 + 36216171 36216211 41 CACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT CACCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTGT < 41bp 1 0.0969360852172989 1 0.0775115489959717 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216191 chr19:36216189 synonymous SNV . 0 19 hm5C_associated_SNPs_37953 0 0 1 0 2 chromatin 1 0.500231643921097 1 0.999536712157806 hm5C_site_37429 DeepMRMD:1;iRNA_m5C:0.999536712157806 37430 chr19 36216189 36216189 1 + C T STAD 36216192 + 36216172 36216212 41 ACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTG ACCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTGTG < 41bp 1 0.559620672508831 1 0.624752283096313 experiment 0.880758654982338 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216192 chr19:36216189 synonymous SNV . 0 18 hm5C_associated_SNPs_37954 0 0 1 0 2 chromatin 1 0.500231643921092 0.750495433807374 0.999536712157815 hm5C_site_37430 DeepMRMD:0.750495433807374;iRNA_m5C:0.999536712157815 37431 chr19 36216189 36216189 1 + C T STAD 36216193 + 36216173 36216213 41 CCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGT CCTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTGTGT < 41bp 1 0.129502721111782 1 0.362399101257324 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216193 chr19:36216189 synonymous SNV . 0 17 hm5C_associated_SNPs_37955 0 0 1 0 2 chromatin 1 0.50023164392107 1 0.99953671215786 hm5C_site_37431 DeepMRMD:1;iRNA_m5C:0.99953671215786 37432 chr19 36216189 36216189 1 + C T STAD 36216194 + 36216174 36216214 41 CTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGTGTG CTCTGTGCCAGGGGGTCCCCCGATGGTGTGCTTGCTGTGTG < 41bp 1 0.315158603085091 1 0.863245129585266 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216194 chr19:36216189 synonymous SNV . 0 16 hm5C_associated_SNPs_37956 0 0 1 0 2 chromatin 1 0.500231643921093 0.273509740829468 0.999536712157815 hm5C_site_37432 DeepMRMD:0.273509740829468;iRNA_m5C:0.999536712157815 37433 chr15 74325013 74325013 1 + T C STAD 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCGCGCCAGTGTACGCC < 41bp 1 0.330461902855964 1 0.0696938335895538 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325013 nonsynonymous SNV 0.007 1 28 hm5C_associated_SNPs_37957 0 0 0 0 2 Cytosol 1 0.500231651247131 1 0.999536697505737 hm5C_site_37433 DeepMRMD:1;iRNA_m5C:0.999536697505737 37434 chr21 38865409 38865409 1 + G C STAD 38865404 + 38865384 38865424 41 CCTTGCCATTGATATGTGGTCCCTCGGGTGTATTTTGGTTG CCTTGCCATTGATATGTGGTCCCTCCGGTGTATTTTGGTTG < 41bp 1 0.0772483652839655 1 0.0365063846111298 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38865404 chr21:38865409 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_37958 0 0 1 0 2 Cytosol 1 0.500231643921112 1 0.999536712157777 hm5C_site_37434 DeepMRMD:1;iRNA_m5C:0.999536712157777 37435 chr1 957708 957708 1 + G C STAD 957712 + 957692 957732 41 AACCAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTGAA AACCAGGTGTCCACTGCGGACACCAGGATCTTCTTTGTGAA < 41bp 1 0.517433108096712 1 0.309218227863312 experiment 0.965133783806577 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957712 chr1:957708 nonsynonymous SNV 0.993 3 17 hm5C_associated_SNPs_37959 0 0 1 0 0 Endoplasmic reticulum 1 0.50023170890499 1 0.999536582190021 hm5C_site_37435 DeepMRMD:1;iRNA_m5C:0.999536582190021 37436 chr1 957708 957708 1 + G C STAD 957715 + 957695 957735 41 CAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTGAACCC CAGGTGTCCACTGCGGACACCAGGATCTTCTTTGTGAACCC < 41bp 1 0.569635525547606 1 0.577998101711273 experiment 0.860728948904788 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957715 chr1:957708 nonsynonymous SNV 0.993 3 14 hm5C_associated_SNPs_37960 0 0 1 0 0 Endoplasmic reticulum 1 0.500231642076842 0.844003796577454 0.999536715846315 hm5C_site_37436 DeepMRMD:0.844003796577454;iRNA_m5C:0.999536715846315 37437 chr1 957708 957708 1 + G C STAD 957724 + 957704 957744 41 ACTGGGGACACCAGGATCTTCTTTGTGAACCCTGCACCCCC ACTGCGGACACCAGGATCTTCTTTGTGAACCCTGCACCCCC < 41bp 1 0.158417348901543 1 0.0819502770900726 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957724 chr1:957708 nonsynonymous SNV 0.993 3 5 hm5C_associated_SNPs_37961 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920846 1 0.999536712158307 hm5C_site_37437 DeepMRMD:1;iRNA_m5C:0.999536712158307 37438 chr16 50342255 50342255 1 + T A STAD 50342243 + 50342223 50342263 41 TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGTGTCCTTCG TTCCCTCCTCTCCAGGACGGCGGCACTGGGTGAGTCCTTCG < 41bp 1 0.52463094570148 1 0.361847698688507 experiment 0.950738108597041 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50342243 chr16:50342255 nonsynonymous SNV 0.974 1 33 hm5C_associated_SNPs_37962 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921086 1 0.999536712157827 hm5C_site_37438 DeepMRMD:1;iRNA_m5C:0.999536712157827 37439 chr1 24996643 24996643 1 + G C STAD 24996652 + 24996632 24996672 41 GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGT GTCTGTAAGAACGGTCTCATCCTCCCGATCTGTCTCCGGGT < 41bp 1 0.168401826562146 1 0.0423490107059479 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996652 chr1:24996643 nonsynonymous SNV 0.988 4 12 hm5C_associated_SNPs_37963 0 0 1 0 1 Cytosol 1 0.50023164362991 1 0.999536712740179 hm5C_site_37439 DeepMRMD:1;iRNA_m5C:0.999536712740179 37440 chr12 117426518 117426518 1 + A G STAD 117426534 + 117426514 117426554 41 CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCC CAGTGGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCC < 41bp 1 0.517279858412886 1 0.269261330366135 experiment 0.965440283174227 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426534 chr12:117426518 synonymous SNV . 0 5 hm5C_associated_SNPs_37965 0 0 0 0 1 Cytosol 1 0.500200348974155 1 0.999599302051689 hm5C_site_37440 DeepMRMD:1;iRNA_m5C:0.999599302051689 37441 chr4 20555436 20555436 1 + G A STAD 20555440 + 20555420 20555460 41 TTTTCCAGAGCAATTGGAGCCAACCCTCTTTACTGTGATTG TTTTCCAGAGCAATTGAAGCCAACCCTCTTTACTGTGATTG < 41bp 1 0.12640117370185 1 0.164535760879517 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20555440 chr4:20555436 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_37966 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_37441 DeepMRMD:1;iRNA_m5C:0.999536712157815 37442 chr20 44571763 44571763 1 + A G STAD 44571747 + 44571727 44571767 41 GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCGC GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAGCCGC < 41bp 1 0.413544453140737 1 0.49583226442337 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571747 chr20:44571763 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_37968 0 0 1 0 1 chromatin 1 0.500231643919937 1 0.999536712160126 hm5C_site_37442 DeepMRMD:1;iRNA_m5C:0.999536712160126 37443 chr7 149426290 149426290 1 + G A STAD 149426306 + 149426286 149426326 41 GGCTGAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG GGCTAAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG < 41bp 1 0.0395131076541579 1 0.286056637763977 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149426306 chr7:149426290 nonsynonymous SNV 0.003 2 5 hm5C_associated_SNPs_37970 0 0 0 0 2 Cytosol 1 0.500231643938249 1 0.999536712123501 hm5C_site_37443 DeepMRMD:1;iRNA_m5C:0.999536712123501 37444 chr3 47050533 47050533 1 + C T STAD 47050517 + 47050497 47050537 41 TCCCTTGCCCATGAAGGTGGCCATCCGCAGCGTGGCCGTGA TCCCTTGCCCATGAAGGTGGCCATCCGCAGCGTGGCTGTGA < 41bp 1 0.0188126347260402 1 0.0552223026752472 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47050517 chr3:47050533 synonymous SNV . 0 37 hm5C_associated_SNPs_37971 0 0 1 0 2 Nucleus 1 0.50023164392115 1 0.999536712157699 hm5C_site_37444 DeepMRMD:1;iRNA_m5C:0.999536712157699 37445 chr5 169127044 169127044 1 + G A STAD 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGATGGGTGACATCATTCAGATTCGCAAGGACTATCCA < 41bp 1 0.435479800432636 1 0.732904493808746 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127044 nonsynonymous SNV 0.985 2 6 hm5C_associated_SNPs_37973 0 0 1 0 2 Cytosol 1 0.500231674495961 0.534191012382508 0.999536651008079 hm5C_site_37445 DeepMRMD:0.534191012382508;iRNA_m5C:0.999536651008079 37446 chr3 10320693 10320693 1 + G A STAD 10320688 + 10320668 10320708 41 GCTGCCTTGCGTGAGAACACCAGTCGCCTCTACAGTCTTTA GCTGCCTTGCGTGAGAACACCAGTCACCTCTACAGTCTTTA < 41bp 1 0.138186647419065 1 0.103454649448395 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320688 chr3:10320693 nonsynonymous SNV 0.998 0 26 hm5C_associated_SNPs_37975 0 0 1 0 2 Cytosol 1 0.500231526948846 1 0.999536946102308 hm5C_site_37446 DeepMRMD:1;iRNA_m5C:0.999536946102308 37447 chr2 47205950 47205950 1 + C T STAD 47205958 + 47205938 47205978 41 ATAACAGCACGTCGAGGCATCTGAAAGGCTGTCACCCGCTT ATAACAGCACGTTGAGGCATCTGAAAGGCTGTCACCCGCTT < 41bp 1 0.569995530773064 1 0.617924571037292 experiment 0.860008938453873 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC7A ENSG00000068724 CDS Human protein_coding chr2:47205958 chr2:47205950 nonsynonymous SNV 0.271 1 13 hm5C_associated_SNPs_37976 0 0 1 0 2 Nucleus 1 0.500230227834232 0.764150857925416 0.999539544331536 hm5C_site_37447 DeepMRMD:0.764150857925416;iRNA_m5C:0.999539544331536 37448 chr7 65706170 65706170 1 + T A STAD 65706154 + 65706134 65706174 41 AACTTGTCTTACATCCTGAACGGTGGATGAGAACACTCTTA AACTTGTCTTACATCCTGAACGGTGGATGAGAACACACTTA < 41bp 1 0.253773614547694 1 0.677960395812988 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65706154 chr7:65706170 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_37977 0 0 1 0 1 nucleoplasm 1 0.500231643923661 0.644079208374024 0.999536712152678 hm5C_site_37448 DeepMRMD:0.644079208374024;iRNA_m5C:0.999536712152678 37449 chr9 140110127 140110127 1 + C A STAD 140110114 + 140110094 140110134 41 CCTCCTTCCTGCAATAGGACCTGTCCGGGTGCCCCTCTGGG CCTCCTTCCTGCAATAGGACCTGTCCGGGTGCCACTCTGGG < 41bp 1 0.0377123195492536 1 0.0617672204971313 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110114 chr9:140110127 synonymous SNV . 0 34 hm5C_associated_SNPs_37978 0 0 1 0 1 chromatin 1 0.500231643921678 1 0.999536712156644 hm5C_site_37449 DeepMRMD:1;iRNA_m5C:0.999536712156644 37450 chr19 50158031 50158031 1 + C G STAD 50158043 + 50158023 50158063 41 CTGGGGGGCTGCGGTTCGACCCCCCCCACCCCCACCGGGCT CTGGGGGGGTGCGGTTCGACCCCCCCCACCCCCACCGGGCT < 41bp 1 0.156623399109144 1 0.182524353265762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50158043 chr19:50158031 synonymous SNV . 0 9 hm5C_associated_SNPs_37979 0 0 1 0 1 Cytosol 1 0.500231668491654 1 0.999536663016692 hm5C_site_37450 DeepMRMD:1;iRNA_m5C:0.999536663016692 37451 chr2 101612039 101612039 1 + C T STAD 101612019 + 101611999 101612039 41 CAGCAGTCTGTCTGAGTCGTCAGGCCTCCAGCAGCCGCCCC CAGCAGTCTGTCTGAGTCGTCAGGCCTCCAGCAGCCGCCCT < 41bp 1 0.679969821751843 1 0.963466644287109 experiment 0.640060356496315 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101612019 chr2:101612039 stopgain 0.240 0 41 hm5C_associated_SNPs_37980 0 0 0 0 0 cytosol 1 0.500231643920419 0.0730667114257819 0.999536712159163 hm5C_site_37451 DeepMRMD:0.0730667114257819;iRNA_m5C:0.999536712159163 37452 chr7 44733484 44733484 1 + C A STAD 44733465 + 44733445 44733485 41 CGGATGGCCCGCTCCTCCCCCTACCCCACTGACGTGGCCCG CGGATGGCCCGCTCCTCCCCCTACCCCACTGACGTGGCCAG < 41bp 1 0.173037664902974 1 0.309382230043411 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44733465 chr7:44733484 synonymous SNV . 0 40 hm5C_associated_SNPs_37981 0 0 1 0 1 Nucleus 1 0.500231643921012 1 0.999536712157976 hm5C_site_37452 DeepMRMD:1;iRNA_m5C:0.999536712157976 37453 chr7 44733484 44733484 1 + C A STAD 44733483 + 44733463 44733503 41 CCCTACCCCACTGACGTGGCCCGAGTGGTGAATGCCCCCAT CCCTACCCCACTGACGTGGCCAGAGTGGTGAATGCCCCCAT < 41bp 1 0.653367681848731 1 0.848892569541931 experiment 0.693264636302537 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44733483 chr7:44733484 synonymous SNV . 0 22 hm5C_associated_SNPs_37982 0 0 1 0 1 Nucleus 1 0.500231643921208 0.302214860916138 0.999536712157583 hm5C_site_37453 DeepMRMD:0.302214860916138;iRNA_m5C:0.999536712157583 37454 chr20 47635531 47635531 1 + C T STAD 47635527 + 47635507 47635547 41 TGACAGCTGGAAGGGTAGACCATACGCAAGTAAGGCCACTT TGACAGCTGGAAGGGTAGACCATATGCAAGTAAGGCCACTT < 41bp 1 0.110990016441337 1 0.263516545295715 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47635527 chr20:47635531 synonymous SNV . 0 25 hm5C_associated_SNPs_37983 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_37454 DeepMRMD:1;iRNA_m5C:0.999536712157815 37455 chr19 6366288 6366288 1 + C T STAD 6366276 + 6366256 6366296 41 GGACGTCCCTCAGGGCCAAGCCACAGACATTGCCATCCAGG GGACGTCCCTCAGGGCCAAGCCACAGACATTGTCATCCAGG < 41bp 1 0.348800975047777 1 0.259414315223694 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6366276 chr19:6366288 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_37984 0 0 1 0 2 Cytosol 1 0.500175110973854 1 0.999649778052291 hm5C_site_37455 DeepMRMD:1;iRNA_m5C:0.999649778052291 37456 chr19 6366288 6366288 1 + C T STAD 6366277 + 6366257 6366297 41 GACGTCCCTCAGGGCCAAGCCACAGACATTGCCATCCAGGC GACGTCCCTCAGGGCCAAGCCACAGACATTGTCATCCAGGC < 41bp 1 0.464387161827847 1 0.846078395843506 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6366277 chr19:6366288 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_37985 0 0 1 0 2 Cytosol 1 0.500231643867384 0.307843208312988 0.999536712265231 hm5C_site_37456 DeepMRMD:0.307843208312988;iRNA_m5C:0.999536712265231 37457 chrX 47098545 47098545 1 + C A STAD 47098540 + 47098520 47098560 41 AGGGGACCAGGACTCCAGCACCTTCCCTGGCTGCATCAACA AGGGGACCAGGACTCCAGCACCTTCACTGGCTGCATCAACA < 41bp 1 0.0080765681102961 1 0.0531773865222931 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47098540 chrX:47098545 nonsynonymous SNV 0.929 4 26 hm5C_associated_SNPs_37986 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37457 DeepMRMD:1;iRNA_m5C:0.999536712157815 37458 chr5 132400712 132400712 1 + G A STAD 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCGTTCAATTGGAACAGCAGCTAAAAGCCAGGTAAAGTTTC < 41bp 1 0.420696339643736 1 0.416877776384354 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400712 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_37987 0 0 1 0 2 Cytosol 1 0.500231642757108 1 0.999536714485783 hm5C_site_37458 DeepMRMD:1;iRNA_m5C:0.999536714485783 37459 chr3 47447464 47447464 1 + G A STAD 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTACGAGAGCACTTCCCTCAAGCCTACAGC < 41bp 1 0.0839653843797061 1 0.0194356441497803 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447464 synonymous SNV . 0 17 hm5C_associated_SNPs_37988 0 0 1 0 3 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_37459 DeepMRMD:1;iRNA_m5C:0.999536712157816 37460 chr19 50906824 50906824 1 + G A STAD 50906843 + 50906823 50906863 41 CGTACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT CATACCTCATCTCTCGGGCCCAGACCCTCAAGGTGAGGGCT < 41bp 1 0.0702555718313528 1 0.229276388883591 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906843 chr19:50906824 synonymous SNV . 0 2 hm5C_associated_SNPs_37989 2 0 1 1 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37460 DeepMRMD:1;iRNA_m5C:0.999536712157815 not specified not specified 37461 chr17 77755530 77755530 1 + G A STAD 77755519 + 77755499 77755539 41 CATGAGAAGGAGGTGCAGAACCGGAAGAGAGGCAAGAGGCC CATGAGAAGGAGGTGCAGAACCGGAAGAGAGACAAGAGGCC < 41bp 1 0.696230762268051 1 0.538327991962433 experiment 0.607538475463897 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755519 chr17:77755530 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_37990 0 0 1 0 2 chromatin 1 0.500231644473771 0.923344016075134 0.999536711052458 hm5C_site_37461 DeepMRMD:0.923344016075134;iRNA_m5C:0.999536711052458 37462 chr17 77755530 77755530 1 + G A STAD 77755547 + 77755527 77755567 41 GAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGCC GAGACAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGCC < 41bp 1 0.418687529785315 1 0.4477778673172 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755547 chr17:77755530 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_37991 0 0 1 0 2 chromatin 1 0.500231679758113 1 0.999536640483773 hm5C_site_37462 DeepMRMD:1;iRNA_m5C:0.999536640483773 37463 chr17 8192690 8192690 1 + G A STAD 8192673 + 8192653 8192693 41 AGAACCTGGCCCTGAGGGGCCGCTGTCAAGAAGCCTGGGTC AGAACCTGGCCCTGAGGGGCCGCTGTCAAGAAGCCTGAGTC < 41bp 1 0.469164824124283 1 0.426478743553162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RANGRF ENSG00000108961 CDS Human protein_coding chr17:8192673 chr17:8192690 stopgain 0.995 1 38 hm5C_associated_SNPs_37992 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37463 DeepMRMD:1;iRNA_m5C:0.999536712157815 37464 chr8 48883154 48883154 1 + C T STAD 48883170 + 48883150 48883190 41 ACATCTTGCTGTGTGGCGACCCTGGTACCAGCAAGTCCCAG ACATTTTGCTGTGTGGCGACCCTGGTACCAGCAAGTCCCAG < 41bp 1 0.284768727478277 1 0.17180523276329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48883170 chr8:48883154 synonymous SNV . 0 5 hm5C_associated_SNPs_37993 0 0 1 0 1 Cytosol 1 0.500231643921065 1 0.99953671215787 hm5C_site_37464 DeepMRMD:1;iRNA_m5C:0.99953671215787 37465 chr3 169985726 169985726 1 + C T STAD 169985728 + 169985708 169985748 41 ATCTACCGTAGAGGTGCACGCCGCTGGAGAAAGCTTTATTG ATCTACCGTAGAGGTGCATGCCGCTGGAGAAAGCTTTATTG < 41bp 1 0.435471113836865 1 0.489409476518631 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:169985728 chr3:169985726 nonsynonymous SNV 0.981 5 19 hm5C_associated_SNPs_37994 0 0 1 0 1 Ribosome 1 0.500231643920909 1 0.999536712158183 hm5C_site_37465 DeepMRMD:1;iRNA_m5C:0.999536712158183 37466 chr12 53412625 53412625 1 + G A STAD 53412624 + 53412604 53412644 41 CGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCA CGATGACGATGTGTATAGGGCACCTCCAATTGACCGTTCCA < 41bp 1 0.300261946209123 1 0.038093090057373 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412624 chr12:53412625 synonymous SNV . 0 22 hm5C_associated_SNPs_37995 0 0 1 0 1 Cytosol 1 0.500231591402901 1 0.999536817194199 hm5C_site_37466 DeepMRMD:1;iRNA_m5C:0.999536817194199 37467 chr12 53412625 53412625 1 + G A STAD 53412626 + 53412606 53412646 41 ATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATC ATGACGATGTGTATAGGGCACCTCCAATTGACCGTTCCATC < 41bp 1 0.0589601516956494 1 0.0332088470458984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53412626 chr12:53412625 synonymous SNV . 0 20 hm5C_associated_SNPs_37996 0 0 1 0 1 Cytosol 1 0.500231025296048 1 0.999537949407904 hm5C_site_37467 DeepMRMD:1;iRNA_m5C:0.999537949407904 37468 chr8 26505233 26505233 1 + C T STAD 26505249 + 26505229 26505269 41 AGGCCGCATTGCTGTGGGATCCGATGCCGACCTGGTCATCT AGGCTGCATTGCTGTGGGATCCGATGCCGACCTGGTCATCT < 41bp 1 0.173185708935161 1 0.170735239982605 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26505249 chr8:26505233 nonsynonymous SNV 0.987 4 5 hm5C_associated_SNPs_37997 0 0 1 0 1 Nucleus 1 0.50023432077383 1 0.999531358452339 hm5C_site_37468 DeepMRMD:1;iRNA_m5C:0.999531358452339 37469 chr12 57600403 57600403 1 + G A STAD 57600397 + 57600377 57600417 41 TATGGATGTCCATGTCAAGGCTGGCCGTGTCTATTGGACCA TATGGATGTCCATGTCAAGGCTGGCCATGTCTATTGGACCA < 41bp 1 0.178297999791115 1 0.0698320269584656 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600397 chr12:57600403 nonsynonymous SNV 0.996 3 27 hm5C_associated_SNPs_37998 0 0 0 0 0 Exosome 1 0.500231648762045 1 0.99953670247591 hm5C_site_37469 DeepMRMD:1;iRNA_m5C:0.99953670247591 37470 chr6 145103188 145103188 1 + G A STAD 145103189 + 145103169 145103209 41 ATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAACGTT ATGATGGACTTGAGCAAATACATAAGGACCTGGTCAACGTT < 41bp 1 0.176789075303461 1 0.158808916807175 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145103189 chr6:145103188 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_37999 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37470 DeepMRMD:1;iRNA_m5C:0.999536712157815 37471 chr3 51980283 51980283 1 + C A STAD 51980280 + 51980260 51980300 41 GCCATCCTCACTAGTGGGCTCCGCATCATGCCACATTCTGG GCCATCCTCACTAGTGGGCTCCGAATCATGCCACATTCTGG < 41bp 1 0.275221517264603 1 0.21607369184494 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PARP3 ENSG00000041880 CDS Human protein_coding chr3:51980280 chr3:51980283 synonymous SNV . 0 24 hm5C_associated_SNPs_38000 0 0 1 0 1 nucleus 1 0.500231643964206 1 0.999536712071589 hm5C_site_37471 DeepMRMD:1;iRNA_m5C:0.999536712071589 37472 chr17 78335554 78335554 1 + G A STAD 78335559 + 78335539 78335579 41 CCCAAGAAGTTCGTGGACATCTTTCAGCAGACTCCTCTGGG CCCAAGAAGTTCGTGAACATCTTTCAGCAGACTCCTCTGGG < 41bp 1 0.0295155994691473 1 0.043266624212265 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78335559 chr17:78335554 nonsynonymous SNV 0.047 0 16 hm5C_associated_SNPs_38002 0 0 1 0 1 Nucleus 1 0.500231644456238 1 0.999536711087525 hm5C_site_37472 DeepMRMD:1;iRNA_m5C:0.999536711087525 37473 chr11 73021350 73021350 1 + G A STAD 73021363 + 73021343 73021383 41 ATGGCCCGCCGCCTGCCCCGCACCAGTGCTCTGAAGTCCAG ATGGCCCACCGCCTGCCCCGCACCAGTGCTCTGAAGTCCAG < 41bp 1 0.419132161680342 1 0.131449908018112 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73021363 chr11:73021350 nonsynonymous SNV 0.307 1 8 hm5C_associated_SNPs_38003 0 0 0 0 0 Cytosol 1 0.500231643921333 1 0.999536712157335 hm5C_site_37473 DeepMRMD:1;iRNA_m5C:0.999536712157335 37474 chr11 73021350 73021350 1 + G A STAD 73021366 + 73021346 73021386 41 GCCCGCCGCCTGCCCCGCACCAGTGCTCTGAAGTCCAGCTC GCCCACCGCCTGCCCCGCACCAGTGCTCTGAAGTCCAGCTC < 41bp 1 0.324361259109272 1 0.128709316253662 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73021366 chr11:73021350 nonsynonymous SNV 0.307 1 5 hm5C_associated_SNPs_38004 0 0 0 0 0 Cytosol 1 0.500231643919175 1 0.999536712161649 hm5C_site_37474 DeepMRMD:1;iRNA_m5C:0.999536712161649 37475 chr1 120285539 120285539 1 + G A STAD 120285545 + 120285525 120285565 41 GGGCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGGCTCA GGGCTTGGTCCAAGACACTACGCCTGTACTGCAGGGGCTCA < 41bp 1 0.558029083021396 1 0.0922687947750092 experiment 0.883941833957208 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120285545 chr1:120285539 nonsynonymous SNV 0.268 2 15 hm5C_associated_SNPs_38005 0 0 1 0 0 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_37475 DeepMRMD:1;iRNA_m5C:0.999536712157808 37476 chr1 120285539 120285539 1 + G A STAD 120285547 + 120285527 120285567 41 GCTTGGTCCAAGGCACTACGCCTGTACTGCAGGGGCTCAAT GCTTGGTCCAAGACACTACGCCTGTACTGCAGGGGCTCAAT < 41bp 1 0.184266814655162 1 0.0359932780265808 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120285547 chr1:120285539 nonsynonymous SNV 0.268 2 13 hm5C_associated_SNPs_38006 0 0 1 0 0 Ribosome 1 0.500231643921581 1 0.999536712156837 hm5C_site_37476 DeepMRMD:1;iRNA_m5C:0.999536712156837 37477 chr1 203821346 203821346 1 + G A STAD 203821365 + 203821345 203821385 41 AGCATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAA AACATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAA < 41bp 1 0.446499490303424 1 0.341596603393555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203821365 chr1:203821346 nonsynonymous SNV 0.016 1 2 hm5C_associated_SNPs_38008 0 0 0 0 1 Nucleus 1 0.500231643949494 1 0.999536712101011 hm5C_site_37477 DeepMRMD:1;iRNA_m5C:0.999536712101011 37478 chr8 133855000 133855000 1 + C T STAD 133855017 + 133854997 133855037 41 TCTCGCAGACCCTGGGAGCTCAGATGATGATGATGTTAGTA TCTTGCAGACCCTGGGAGCTCAGATGATGATGATGTTAGTA < 41bp 1 0.542009225543864 1 0.481365948915482 experiment 0.915981548912271 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133855017 chr8:133855000 synonymous SNV . 0 4 hm5C_associated_SNPs_38009 0 0 1 0 0 Nucleus 1 0.500231643948096 1 0.999536712103809 hm5C_site_37478 DeepMRMD:1;iRNA_m5C:0.999536712103809 37479 chr16 1556293 1556293 1 + G A STAD 1556292 + 1556272 1556312 41 AGCAGATTCAACTCCGTGGCCGGCCACTTCTTCTTCCCCCT AGCAGATTCAACTCCGTGGCCAGCCACTTCTTCTTCCCCCT < 41bp 1 0.274798184760223 1 0.123012006282806 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1556292 chr16:1556293 nonsynonymous SNV 0.739 4 22 hm5C_associated_SNPs_38010 0 0 1 0 1 Cytosol 1 0.500231643907022 1 0.999536712185957 hm5C_site_37479 DeepMRMD:1;iRNA_m5C:0.999536712185957 37480 chr9 134021654 134021654 1 + C T STAD 134021668 + 134021648 134021688 41 TAGTTCCGTGCCATTGAAGTCCTCAGTCTTGCCCTCACCAT TAGTTCTGTGCCATTGAAGTCCTCAGTCTTGCCCTCACCAT < 41bp 1 0.238397908421655 1 0.0515927970409393 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP214 ENSG00000126883 CDS Human protein_coding chr9:134021668 chr9:134021654 synonymous SNV . 0 7 hm5C_associated_SNPs_38011 0 0 0 0 1 Cytosol 1 0.500231644697066 1 0.999536710605869 hm5C_site_37480 DeepMRMD:1;iRNA_m5C:0.999536710605869 37481 chr1 22307570 22307570 1 + C T STAD 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGGTGTTGGGCGAGTACGATCGTGCTGTGAA < 41bp 1 0.59870900929185 1 0.380984157323837 experiment 0.802581981416301 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307570 synonymous SNV . 0 30 hm5C_associated_SNPs_38012 0 0 0 0 2 unknown 1 0.500232011500653 1 0.999535976998694 hm5C_site_37481 DeepMRMD:1;iRNA_m5C:0.999535976998694 37482 chr1 22307570 22307570 1 + C T STAD 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTACGATCGTGCTGTGAAGGAGGG < 41bp 1 0.235524066093211 1 0.440507590770721 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307570 synonymous SNV . 0 24 hm5C_associated_SNPs_38013 0 0 0 0 2 unknown 1 0.500231033051847 1 0.999537933896305 hm5C_site_37482 DeepMRMD:1;iRNA_m5C:0.999537933896305 37483 chr1 22307570 22307570 1 + C T STAD 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACGATCGTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.607505356801889 1 0.126489788293839 experiment 0.784989286396222 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307570 synonymous SNV . 0 16 hm5C_associated_SNPs_38014 0 0 0 0 2 unknown 1 0.500231800579543 1 0.999536398840914 hm5C_site_37483 DeepMRMD:1;iRNA_m5C:0.999536398840914 37484 chr1 22307570 22307570 1 + C T STAD 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GATCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.295943256133852 1 0.127979606389999 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307570 synonymous SNV . 0 3 hm5C_associated_SNPs_38015 0 0 0 0 2 unknown 1 0.500231645316444 1 0.999536709367113 hm5C_site_37484 DeepMRMD:1;iRNA_m5C:0.999536709367113 37485 chr1 22307570 22307570 1 + C T STAD 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ATCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.55979537295188 1 0.51963871717453 experiment 0.88040925409624 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307570 synonymous SNV . 0 2 hm5C_associated_SNPs_38016 0 0 0 0 2 unknown 1 0.500231643712761 0.96072256565094 0.999536712574479 hm5C_site_37485 DeepMRMD:0.96072256565094;iRNA_m5C:0.999536712574479 37486 chr1 22307570 22307570 1 + C T STAD 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA TCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.414710315943959 1 0.255541086196899 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307570 synonymous SNV . 0 1 hm5C_associated_SNPs_38017 0 0 0 0 2 unknown 1 0.500231645300909 1 0.999536709398182 hm5C_site_37486 DeepMRMD:1;iRNA_m5C:0.999536709398182 37487 chr4 103537599 103537599 1 + C T STAD 103537592 + 103537572 103537612 41 TTGTGCTTTCTCCCCTCAGACGAGCTCCGAGACAGTGACAG TTGTGCTTTCTCCCCTCAGACGAGCTCTGAGACAGTGACAG < 41bp 1 0.450828315434513 1 0.750001192092896 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103537592 chr4:103537599 stopgain 0.840 0 28 hm5C_associated_SNPs_38018 0 0 1 0 1 Ribosome 1 0.500499855086394 0.499997615814208 0.999000289827213 hm5C_site_37487 DeepMRMD:0.499997615814208;iRNA_m5C:0.999000289827213 37488 chr8 143782006 143782006 1 + C A STAD 143782018 + 143781998 143782038 41 ACGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCC ACGCCAACATGACTGCGAGACAACGAGATCCAGAGGACTCC < 41bp 1 0.647596162037389 1 0.141574859619141 experiment 0.704807675925222 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143782018 chr8:143782006 nonsynonymous SNV 0.025 1 9 hm5C_associated_SNPs_38019 0 0 1 0 1 nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_37488 DeepMRMD:1;iRNA_m5C:0.999536712157814 37489 chr9 37770016 37770016 1 + G A STAD 37770013 + 37769993 37770033 41 ACCTGACTCCTGACTCAGAACACGGTATGTAGTTGAATGCA ACCTGACTCCTGACTCAGAACACAGTATGTAGTTGAATGCA < 41bp 1 0.492623681749148 1 0.309346258640289 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37770013 chr9:37770016 nonsynonymous SNV 0.845 1 24 hm5C_associated_SNPs_38020 0 0 1 1 2 chromatin 1 0.500231646977012 1 0.999536706045977 hm5C_site_37489 DeepMRMD:1;iRNA_m5C:0.999536706045977 37490 chr22 23438408 23438408 1 + C T STAD 23438428 + 23438408 23438448 41 CTGCGCTCCCGGGACATGACCACGGGCATTGTGGAGAACAA TTGCGCTCCCGGGACATGACCACGGGCATTGTGGAGAACAA < 41bp 1 0.687005110177605 1 0.777146935462952 experiment 0.62598977964479 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438428 chr22:23438408 synonymous SNV . 0 1 hm5C_associated_SNPs_38021 0 0 1 0 0 Ribosome 1 0.500231643894825 0.445706129074096 0.99953671221035 hm5C_site_37490 DeepMRMD:0.445706129074096;iRNA_m5C:0.99953671221035 37491 chr8 146033178 146033178 1 + G T STAD 146033186 + 146033166 146033206 41 TTCGCGTGCACAGAGTGCGGCAAGGCGTTCTGCCGCAGGTT TTCGCGTGCACATAGTGCGGCAAGGCGTTCTGCCGCAGGTT < 41bp 1 0.326717860224754 1 0.178236395120621 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146033186 chr8:146033178 stopgain 0.560 0 13 hm5C_associated_SNPs_38022 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_37491 DeepMRMD:1;iRNA_m5C:0.999536712157816 37492 chr11 70275270 70275270 1 + C T STAD 70275262 + 70275242 70275282 41 GGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGG GGAGAGAGCCCAGCGGATGGCCAAGGAGTGGCAGGAGCAGG < 41bp 1 0.438656559997884 1 0.408257186412811 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70275262 chr11:70275270 nonsynonymous SNV 0.989 3 29 hm5C_associated_SNPs_38023 0 0 1 0 1 Ribosome 1 0.500231643921099 1 0.999536712157801 hm5C_site_37492 DeepMRMD:1;iRNA_m5C:0.999536712157801 37493 chr11 45948318 45948318 1 + G T STAD 45948298 + 45948278 45948318 41 CACAACTGGACGAGGAAGACCCCTGCTTTGAGTTCCGGCAG CACAACTGGACGAGGAAGACCCCTGCTTTGAGTTCCGGCAT < 41bp 1 0.20642384222735 1 0.410239279270172 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45948298 chr11:45948318 nonsynonymous SNV 0.997 1 41 hm5C_associated_SNPs_38025 0 0 0 0 1 chromatin 1 0.500231645007213 1 0.999536709985575 hm5C_site_37493 DeepMRMD:1;iRNA_m5C:0.999536709985575 37494 chr5 36986016 36986016 1 + T C STAD 36986004 + 36985984 36986024 41 ATAAATCAAGATCTGATAAACTTGGTTTTAAATCACCAACT ATAAATCAAGATCTGATAAACTTGGTTTTAAACCACCAACT < 41bp 1 0.317660189487993 1 0.248887419700623 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:36986004 chr5:36986016 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_38026 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37494 DeepMRMD:1;iRNA_m5C:0.999536712157815 37495 chr17 16329476 16329476 1 + G A STAD 16329457 + 16329437 16329477 41 GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCGA GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCAA < 41bp 1 0.00961557437979997 1 0.0510753393173218 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329457 chr17:16329476 nonsynonymous SNV 0.968 5 40 hm5C_associated_SNPs_38027 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921097 1 0.999536712157805 hm5C_site_37495 DeepMRMD:1;iRNA_m5C:0.999536712157805 37496 chr19 1272159 1272159 1 + G A STAD 1272179 + 1272159 1272199 41 GTGCTTGCCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCAT ATGCTTGCCCAGAAGAGGCGCATCTGTCCTCTCAGAGCCAT < 41bp 1 0.110678438056324 1 0.0811865031719208 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272179 chr19:1272159 nonsynonymous SNV 0.272 1 1 hm5C_associated_SNPs_38028 0 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37496 DeepMRMD:1;iRNA_m5C:0.999536712157815 37497 chr11 44129662 44129662 1 + C T STAD 44129673 + 44129653 44129693 41 AATGAACTGCTCATGGCCATCTCAGACAGTGACTACTACAC AATGAACTGTTCATGGCCATCTCAGACAGTGACTACTACAC < 41bp 1 0.572937159974434 1 0.223709166049957 experiment 0.854125680051132 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129673 chr11:44129662 nonsynonymous SNV 0.630 5 10 hm5C_associated_SNPs_38029 0 0 1 0 0 Endoplasmic reticulum 1 0.500231802859796 1 0.999536394280407 hm5C_site_37497 DeepMRMD:1;iRNA_m5C:0.999536394280407 37498 chr12 101012286 101012286 1 + C A STAD 101012291 + 101012271 101012311 41 TTGAGTTAGAAGAGACTTTGCTTAATACTTCTGGGCCTGAA TTGAGTTAGAAGAGAATTTGCTTAATACTTCTGGGCCTGAA < 41bp 1 0.541290184191233 1 0.309516549110413 experiment 0.917419631617534 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101012291 chr12:101012286 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_38031 0 0 1 0 2 Cytosol 1 0.500231643921079 1 0.999536712157842 hm5C_site_37498 DeepMRMD:1;iRNA_m5C:0.999536712157842 37499 chr1 223934706 223934706 1 + G A STAD 223934721 + 223934701 223934741 41 TCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT TCAACAGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT < 41bp 1 0.0660307922999492 1 0.0595785677433014 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934721 chr1:223934706 nonsynonymous SNV 0.706 5 6 hm5C_associated_SNPs_38033 0 0 1 0 1 Ribosome 1 0.500231643195246 1 0.999536713609507 hm5C_site_37499 DeepMRMD:1;iRNA_m5C:0.999536713609507 37500 chr4 123145714 123145714 1 + T C STAD 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCCGAGAGCACACGCTATGTTCTCAGCAGAAGG < 41bp 1 0.418399845451588 1 0.312998533248901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145714 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_38034 0 0 1 0 2 Nucleus 1 0.500231644164705 1 0.99953671167059 hm5C_site_37500 DeepMRMD:1;iRNA_m5C:0.99953671167059 37501 chr3 172052839 172052839 1 + C T STAD 172052840 + 172052820 172052860 41 CAGACCGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA CAGACCGCTTGTCAAAGGCTCAGTTACATCTCATGGCTTTA < 41bp 1 0.0790825024792876 1 0.0433284640312195 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172052840 chr3:172052839 nonsynonymous SNV 0.964 0 20 hm5C_associated_SNPs_38035 0 0 0 0 1 Nucleus 1 0.500231385894306 1 0.999537228211388 hm5C_site_37501 DeepMRMD:1;iRNA_m5C:0.999537228211388 37502 chr5 173378883 173378883 1 + G A STAD 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAACCACTTGACCCACGAAAAACTATATTTGTT < 41bp 1 0.144637514419746 1 0.18719956278801 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378883 synonymous SNV . 0 11 hm5C_associated_SNPs_38036 0 0 1 0 2 Ribosome 1 0.500231726605156 1 0.999536546789688 hm5C_site_37502 DeepMRMD:1;iRNA_m5C:0.999536546789688 37503 chr5 70939714 70939714 1 + G A STAD 70939706 + 70939686 70939726 41 AAACAACGGAGTTCTCTTTTCTGAATCTGCAAAAAAGGCAA AAACAACGGAGTTCTCTTTTCTGAATCTACAAAAAAGGCAA < 41bp 1 0.691854590180354 1 0.725523769855499 experiment 0.616290819639292 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70939706 chr5:70939714 nonsynonymous SNV 0.996 5 29 hm5C_associated_SNPs_38037 0 0 0 1 1 Ribosome 1 0.500231741998293 0.548952460289002 0.999536516003413 hm5C_site_37503 DeepMRMD:0.548952460289002;iRNA_m5C:0.999536516003413 37504 chr17 42636661 42636661 1 + G A STAD 42636652 + 42636632 42636672 41 CTCATGACGCTCATCGTGGGCATCACGTCGGGCTTCTGGAT CTCATGACGCTCATCGTGGGCATCACGTCAGGCTTCTGGAT < 41bp 1 0.258131319751378 1 0.0798180103302002 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FZD2 ENSG00000180340 CDS Human protein_coding chr17:42636652 chr17:42636661 synonymous SNV . 0 30 hm5C_associated_SNPs_38038 0 0 1 0 0 exosome 1 0.500231633806661 1 0.999536732386677 hm5C_site_37504 DeepMRMD:1;iRNA_m5C:0.999536732386677 37505 chr19 45805774 45805774 1 + C A STAD 45805754 + 45805734 45805774 41 AGCTCTGCGCCAGGCCACAGCAGCCGCCCGCTGCCGCTGCC AGCTCTGCGCCAGGCCACAGCAGCCGCCCGCTGCCGCTGCA < 41bp 1 0.579040245042047 1 0.809523105621338 experiment 0.841919509915907 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45805754 chr19:45805774 nonsynonymous SNV 0.999 2 41 hm5C_associated_SNPs_38039 0 0 0 0 0 Nucleus 1 0.500231643197937 0.380953788757324 0.999536713604125 hm5C_site_37505 DeepMRMD:0.380953788757324;iRNA_m5C:0.999536713604125 37506 chr19 45805774 45805774 1 + C A STAD 45805757 + 45805737 45805777 41 TCTGCGCCAGGCCACAGCAGCCGCCCGCTGCCGCTGCCGCC TCTGCGCCAGGCCACAGCAGCCGCCCGCTGCCGCTGCAGCC < 41bp 1 0.2773313555033 1 0.508701264858246 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45805757 chr19:45805774 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_38040 0 0 0 0 0 Nucleus 1 0.500231643921092 0.982597470283508 0.999536712157815 hm5C_site_37506 DeepMRMD:0.982597470283508;iRNA_m5C:0.999536712157815 37507 chr1 158063222 158063222 1 + G A STAD 158063221 + 158063201 158063241 41 CCTTGGTATTCTTCCTCTACCGGCGCCGCAAAGGCAGTGAG CCTTGGTATTCTTCCTCTACCAGCGCCGCAAAGGCAGTGAG < 41bp 1 0.605466669659702 1 0.449835360050201 experiment 0.789066660680595 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063221 chr1:158063222 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_38041 0 0 0 0 2 cytosol 1 0.500231643921928 1 0.999536712156144 hm5C_site_37507 DeepMRMD:1;iRNA_m5C:0.999536712156144 37508 chr12 111072572 111072572 1 + G A STAD 111072570 + 111072550 111072590 41 GCATGGCTTTTTACAGCAGCCCGGAAATTCTGAGGGTAAGA GCATGGCTTTTTACAGCAGCCCAGAAATTCTGAGGGTAAGA < 41bp 1 0.269727902271332 1 0.100321799516678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111072570 chr12:111072572 synonymous SNV . 0 23 hm5C_associated_SNPs_38042 0 0 1 0 0 chromatin 1 0.500231637997265 1 0.999536724005471 hm5C_site_37508 DeepMRMD:1;iRNA_m5C:0.999536724005471 37509 chr19 45535864 45535864 1 + G A STAD 45535862 + 45535842 45535882 41 TTCTCCCAGGCCGACGTGCACCGCCAGATTGCCATTGTGTT TTCTCCCAGGCCGACGTGCACCACCAGATTGCCATTGTGTT < 41bp 1 0.0551618491720797 1 0.0386795997619629 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RELB ENSG00000104856 CDS Human protein_coding chr19:45535862 chr19:45535864 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_38043 0 0 0 0 1 Cytosol 1 0.500231695429687 1 0.999536609140627 hm5C_site_37509 DeepMRMD:1;iRNA_m5C:0.999536609140627 37510 chr11 44129368 44129368 1 + G A STAD 44129385 + 44129365 44129405 41 CTGGGCCTCATTGCCACTGGCATGTTTCAGTTTTGGCCCCA CTGAGCCTCATTGCCACTGGCATGTTTCAGTTTTGGCCCCA < 41bp 1 0.268232878635261 1 0.0746234953403473 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129385 chr11:44129368 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_38044 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643973485 1 0.999536712053031 hm5C_site_37510 DeepMRMD:1;iRNA_m5C:0.999536712053031 37511 chr8 104438300 104438300 1 + C T STAD 104438308 + 104438288 104438328 41 GTGATGACAAAACTGTGAAGCAGTGGAAAATGGATGGGCCA GTGATGACAAAATTGTGAAGCAGTGGAAAATGGATGGGCCA < 41bp 1 0.417845674735077 1 0.582442939281464 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438308 chr8:104438300 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_38046 0 0 1 0 2 Nucleus 1 0.500231644428756 0.835114121437072 0.999536711142488 hm5C_site_37511 DeepMRMD:0.835114121437072;iRNA_m5C:0.999536711142488 37512 chr8 128751149 128751149 1 + G T STAD 128751167 + 128751147 128751187 41 CAGCGCCTTCTCTCCGTCCTCGGATTCTCTGCTCTCCTCGA CATCGCCTTCTCTCCGTCCTCGGATTCTCTGCTCTCCTCGA < 41bp 1 0.64040845209614 1 0.831976771354675 experiment 0.71918309580772 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MYC ENSG00000136997 CDS Human protein_coding chr8:128751167 chr8:128751149 nonsynonymous SNV 0.403 1 3 hm5C_associated_SNPs_38047 0 0 1 0 0 Cytosol 1 0.500231637694837 0.33604645729065 0.999536724610325 hm5C_site_37512 DeepMRMD:0.33604645729065;iRNA_m5C:0.999536724610325 37513 chr11 73021346 73021346 1 + G T STAD 73021363 + 73021343 73021383 41 ATGGCCCGCCGCCTGCCCCGCACCAGTGCTCTGAAGTCCAG ATGTCCCGCCGCCTGCCCCGCACCAGTGCTCTGAAGTCCAG < 41bp 1 0.446184744377123 1 0.195893585681915 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73021363 chr11:73021346 nonsynonymous SNV 0.609 1 4 hm5C_associated_SNPs_38048 0 0 0 0 0 Cytosol 1 0.500231643921031 1 0.999536712157937 hm5C_site_37513 DeepMRMD:1;iRNA_m5C:0.999536712157937 37514 chr11 73021346 73021346 1 + G T STAD 73021366 + 73021346 73021386 41 GCCCGCCGCCTGCCCCGCACCAGTGCTCTGAAGTCCAGCTC TCCCGCCGCCTGCCCCGCACCAGTGCTCTGAAGTCCAGCTC < 41bp 1 0.298992340606082 1 0.112224102020264 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73021366 chr11:73021346 nonsynonymous SNV 0.609 1 1 hm5C_associated_SNPs_38049 0 0 0 0 0 Cytosol 1 0.500231643948376 1 0.999536712103247 hm5C_site_37514 DeepMRMD:1;iRNA_m5C:0.999536712103247 37515 chr11 47602079 47602079 1 + A G STAD 47602077 + 47602057 47602097 41 AATATGCCTTTTCCTTCCAGCCACTGTCAGACCACGGAATG AATATGCCTTTTCCTTCCAGCCGCTGTCAGACCACGGAATG < 41bp 1 0.257193211196369 1 0.0809616148471832 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47602077 chr11:47602079 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_38050 0 0 1 0 2 Ribosome 1 0.500231643921097 1 0.999536712157805 hm5C_site_37515 DeepMRMD:1;iRNA_m5C:0.999536712157805 37516 chr5 145641097 145641097 1 + G T STAD 145641091 + 145641071 145641111 41 AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAA AGGTTGCTTTTAAGGGTGACCCAGAATCAGCCCTAATCCAA < 41bp 1 0.441213647649676 1 0.328835964202881 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641091 chr5:145641097 nonsynonymous SNV 0.997 2 27 hm5C_associated_SNPs_38051 0 0 1 0 1 Nucleus 1 0.500231643921191 1 0.999536712157618 hm5C_site_37516 DeepMRMD:1;iRNA_m5C:0.999536712157618 37517 chrX 48457787 48457787 1 + G A STAD 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCATTCTG < 41bp 1 0.299710372244213 1 0.0477938055992126 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457787 nonsynonymous SNV 0.997 3 36 hm5C_associated_SNPs_38053 0 0 1 0 1 Ribosome 1 0.500231643608854 1 0.999536712782293 hm5C_site_37517 DeepMRMD:1;iRNA_m5C:0.999536712782293 37518 chrX 48457787 48457787 1 + G A STAD 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCATTCTGT < 41bp 1 0.282560763691599 1 0.354062914848328 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457787 nonsynonymous SNV 0.997 3 35 hm5C_associated_SNPs_38054 0 0 1 0 1 Ribosome 1 0.50023164392091 1 0.999536712158179 hm5C_site_37518 DeepMRMD:1;iRNA_m5C:0.999536712158179 37519 chrX 48457787 48457787 1 + G A STAD 48457774 + 48457754 48457794 41 ATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGTC ATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCATTCTGTC < 41bp 1 0.672931954403457 1 0.643774807453156 experiment 0.654136091193085 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457774 chrX:48457787 nonsynonymous SNV 0.997 3 34 hm5C_associated_SNPs_38055 0 0 1 0 1 Ribosome 1 0.500231643313452 0.712450385093688 0.999536713373095 hm5C_site_37519 DeepMRMD:0.712450385093688;iRNA_m5C:0.999536713373095 37520 chr1 155032743 155032743 1 + C A STAD 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGATTGGTGCCAGCTACTGGTACCGTGCCCG < 41bp 1 0.533838649619145 1 0.51845246553421 experiment 0.932322700761709 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032743 nonsynonymous SNV 0.985 2 13 hm5C_associated_SNPs_38056 0 0 0 0 2 Ribosome 1 0.50024211734001 0.96309506893158 0.99951576531998 hm5C_site_37520 DeepMRMD:0.96309506893158;iRNA_m5C:0.99951576531998 37521 chr12 124221713 124221713 1 + G A STAD 124221725 + 124221705 124221745 41 TATCACATGCTGAACATGTGCAGCTTTGACGTGACCAACAA TATCACATACTGAACATGTGCAGCTTTGACGTGACCAACAA < 41bp 1 0.628001984957482 1 0.214054107666016 experiment 0.743996030085037 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124221725 chr12:124221713 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_38058 0 0 1 0 0 Endoplasmic reticulum 1 0.500234797994479 1 0.999530404011042 hm5C_site_37521 DeepMRMD:1;iRNA_m5C:0.999530404011042 37522 chr7 39991409 39991409 1 + G A STAD 39991410 + 39991390 39991430 41 CCTAGTCCCTACAGCAGCAGCAGCTGGCGCCGCTCTCGCAG CCTAGTCCCTACAGCAGCAACAGCTGGCGCCGCTCTCGCAG < 41bp 1 0.602881421576493 1 0.474817514419556 experiment 0.794237156847013 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:39991410 chr7:39991409 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_38059 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37522 DeepMRMD:1;iRNA_m5C:0.999536712157815 37523 chr7 39991409 39991409 1 + G A STAD 39991428 + 39991408 39991448 41 AGCAGCTGGCGCCGCTCTCGCAGTCCCTACAGCCCTGTGCT AACAGCTGGCGCCGCTCTCGCAGTCCCTACAGCCCTGTGCT < 41bp 1 0.213711754295125 1 0.733130574226379 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CDK13 ENSG00000065883 CDS Human protein_coding chr7:39991428 chr7:39991409 nonsynonymous SNV 0.999 1 2 hm5C_associated_SNPs_38060 0 0 1 0 1 Nucleus 1 0.500231643658042 0.533738851547242 0.999536712683916 hm5C_site_37523 DeepMRMD:0.533738851547242;iRNA_m5C:0.999536712683916 37524 chr17 77757732 77757732 1 + C T STAD 77757717 + 77757697 77757737 41 CCAAACCCGAGCTGAAGGATCCCATCCGGAAGAAGCGGGGA CCAAACCCGAGCTGAAGGATCCCATCCGGAAGAAGTGGGGA < 41bp 1 0.107192741866258 1 0.132395207881927 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77757717 chr17:77757732 nonsynonymous SNV 0.241 2 36 hm5C_associated_SNPs_38062 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37524 DeepMRMD:1;iRNA_m5C:0.999536712157815 37525 chr6 163984567 163984567 1 + C T STAD 163984557 + 163984537 163984577 41 CCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTT CCTGCGTACTCCTACGCCAGCTGGCCCTACTATAATGCCTT < 41bp 1 0.357445157651036 1 0.384605646133423 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QKI ENSG00000112531 CDS Human protein_coding chr6:163984557 chr6:163984567 synonymous SNV . 0 31 hm5C_associated_SNPs_38063 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37525 DeepMRMD:1;iRNA_m5C:0.999536712157815 37526 chr11 65347694 65347694 1 + C T STAD 65347700 + 65347680 65347720 41 TGAGCTGAGCCTCACTCTTTCCGGGGTGCTGCTGCGGGAGG TGAGCTGAGCCTCATTCTTTCCGGGGTGCTGCTGCGGGAGG < 41bp 1 0.633459825958072 1 0.719172477722168 experiment 0.733080348083855 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65347700 chr11:65347694 nonsynonymous SNV 0.980 4 15 hm5C_associated_SNPs_38064 0 0 1 0 1 chromatin 1 0.500231643921098 0.561655044555664 0.999536712157805 hm5C_site_37526 DeepMRMD:0.561655044555664;iRNA_m5C:0.999536712157805 37527 chr8 61655327 61655327 1 + G A STAD 61655344 + 61655324 61655364 41 ATCGGACAGAGGAATATGGGCCCCAGAAACATGCAGCAGTC ATCAGACAGAGGAATATGGGCCCCAGAAACATGCAGCAGTC < 41bp 1 0.35265007179003 1 0.187385380268097 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD7 ENSG00000171316 CDS Human protein_coding chr8:61655344 chr8:61655327 nonsynonymous SNV 0.989 2 4 hm5C_associated_SNPs_38065 0 0 1 0 0 Cytosol 1 0.500231643920444 1 0.999536712159112 hm5C_site_37527 DeepMRMD:1;iRNA_m5C:0.999536712159112 37528 chr18 20573460 20573460 1 + A T STAD 20573447 + 20573427 20573467 41 CCAAAGATTCCCCAGGGGAGCCCTGTTCACAGGAATGCATC CCAAAGATTCCCCAGGGGAGCCCTGTTCACAGGTATGCATC < 41bp 1 0.223750610253701 1 0.0409806668758392 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20573447 chr18:20573460 nonsynonymous SNV 0.119 1 34 hm5C_associated_SNPs_38067 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37528 DeepMRMD:1;iRNA_m5C:0.999536712157815 37529 chr9 5747306 5747306 1 + A C STAD 5747314 + 5747294 5747334 41 TCATTTAGAGTAACCAAGAGCAGGTGTTGCTTCAGGGTGAG TCATTTAGAGTACCCAAGAGCAGGTGTTGCTTCAGGGTGAG < 41bp 1 0.664094206172561 1 0.673990607261658 experiment 0.671811587654878 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RIC1 ENSG00000107036 CDS Human protein_coding chr9:5747314 chr9:5747306 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_38068 0 0 1 0 0 Nucleus 1 0.500231643345068 0.652018785476684 0.999536713309864 hm5C_site_37529 DeepMRMD:0.652018785476684;iRNA_m5C:0.999536713309864 37530 chr14 78183895 78183895 1 + A G STAD 78183914 + 78183894 78183934 41 AAGATTTTTGAGACTGCAGCCTATTAATAAAGTTAACATAA AGGATTTTTGAGACTGCAGCCTATTAATAAAGTTAACATAA < 41bp 1 0.177094467910038 1 0.0678490400314331 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLIRP ENSG00000119705 CDS Human protein_coding chr14:78183914 chr14:78183895 synonymous SNV . 0 2 hm5C_associated_SNPs_38069 0 0 1 0 3 Ribosome 1 0.500233650348132 1 0.999532699303735 hm5C_site_37530 DeepMRMD:1;iRNA_m5C:0.999532699303735 37531 chr19 59057202 59057202 1 + G A STAD 59057191 + 59057171 59057211 41 ACTGTGTGGAGTGCTCGGAGCCTCTGTGTGAGACCTGTGTA ACTGTGTGGAGTGCTCGGAGCCTCTGTGTGAAACCTGTGTA < 41bp 1 0.0961437788065958 1 0.0517244637012482 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057191 chr19:59057202 synonymous SNV . 0 32 hm5C_associated_SNPs_38070 0 0 1 0 2 Cytosol 1 0.500231643920584 1 0.999536712158832 hm5C_site_37531 DeepMRMD:1;iRNA_m5C:0.999536712158832 37532 chr19 59057202 59057202 1 + G A STAD 59057205 + 59057185 59057225 41 TCGGAGCCTCTGTGTGAGACCTGTGTAGAGGCGCACCAGCG TCGGAGCCTCTGTGTGAAACCTGTGTAGAGGCGCACCAGCG < 41bp 1 0.517123062407726 1 0.387230575084686 experiment 0.965753875184549 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59057205 chr19:59057202 synonymous SNV . 0 18 hm5C_associated_SNPs_38071 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_37532 DeepMRMD:1;iRNA_m5C:0.999536712157815 37533 chr1 222806483 222806483 1 + T C STAD 222806499 + 222806479 222806519 41 CTATTGATGCAAACAAGCAACCAGAGACAGCCGCCGAAGAG CTATCGATGCAAACAAGCAACCAGAGACAGCCGCCGAAGAG < 41bp 1 0.572009542235201 1 0.217526316642761 experiment 0.855980915529598 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222806499 chr1:222806483 synonymous SNV . 0 5 hm5C_associated_SNPs_38072 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644692254 1 0.999536710615493 hm5C_site_37533 DeepMRMD:1;iRNA_m5C:0.999536710615493 37534 chr2 32828139 32828139 1 + A C STAD 32828127 + 32828107 32828147 41 GACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTG GACCAGAAGAGAAGTGGAATCCTCAGACCTCACGCTTTTTG < 41bp 1 0.111970950943782 1 0.224428415298462 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32828127 chr2:32828139 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_38073 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37534 DeepMRMD:1;iRNA_m5C:0.999536712157815 37535 chr6 18213945 18213945 1 + T C STAD 18213957 + 18213937 18213977 41 TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG TGACTTTTCTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG < 41bp 1 0.436184813499215 1 0.429173529148102 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213957 chr6:18213945 nonsynonymous SNV 1.000 5 9 hm5C_associated_SNPs_38074 0 0 1 0 2 Cytosol 1 0.500231643921021 1 0.999536712157958 hm5C_site_37535 DeepMRMD:1;iRNA_m5C:0.999536712157958 37536 chr6 18213945 18213945 1 + T C STAD 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTCTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG < 41bp 1 0.527046584265651 1 0.619614720344543 experiment 0.945906831468699 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213945 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_38075 0 0 1 0 2 Cytosol 1 0.500231642573065 0.760770559310914 0.99953671485387 hm5C_site_37536 DeepMRMD:0.760770559310914;iRNA_m5C:0.99953671485387 37537 chr5 121786636 121786636 1 + A C STAD 121786629 + 121786609 121786649 41 GACTACCCCAGTGAGGAAGGCTGACCGACCAAGGCCGCAGC GACTACCCCAGTGAGGAAGGCTGACCGCCCAAGGCCGCAGC < 41bp 1 0.400140602890816 1 0.318013668060303 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786629 chr5:121786636 synonymous SNV . 0 28 hm5C_associated_SNPs_38076 0 0 0 0 0 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_37537 DeepMRMD:1;iRNA_m5C:0.999536712157814 37538 chr9 78772059 78772059 1 + A G STAD 78772063 + 78772043 78772083 41 GCACGTGTGTGTGGAGAGCACAGACCGACAAATCAAGTAAT GCACGTGTGTGTGGAGGGCACAGACCGACAAATCAAGTAAT < 41bp 1 0.197528422704169 1 0.166651427745819 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78772063 chr9:78772059 nonsynonymous SNV 0.999 1 17 hm5C_associated_SNPs_38077 0 0 1 0 2 exosome 1 0.500231586842552 1 0.999536826314897 hm5C_site_37538 DeepMRMD:1;iRNA_m5C:0.999536826314897 37539 chrX 205517 205517 1 + T C STAD 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCCGAA < 41bp 1 0.521484675371202 1 0.190605640411377 experiment 0.957030649257596 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205517 nonsynonymous SNV 0.015 1 38 hm5C_associated_SNPs_38078 0 0 1 0 1 Cytosol 1 0.500231644524962 1 0.999536710950075 hm5C_site_37539 DeepMRMD:1;iRNA_m5C:0.999536710950075 37540 chr3 39452321 39452321 1 + A T STAD 39452333 + 39452313 39452353 41 CTTCACTAACCAGATCCAGGCAGCCTTCCGGGAGCCACGGC CTTCACTATCCAGATCCAGGCAGCCTTCCGGGAGCCACGGC < 41bp 1 0.612658018286095 1 0.419751942157745 experiment 0.774683963427811 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPSA ENSG00000168028 CDS Human protein_coding chr3:39452333 chr3:39452321 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_38079 0 0 0 0 1 Cytosol 1 0.500231644044868 1 0.999536711910263 hm5C_site_37540 DeepMRMD:1;iRNA_m5C:0.999536711910263 37541 chr3 39452321 39452321 1 + A T STAD 39452337 + 39452317 39452357 41 ACTAACCAGATCCAGGCAGCCTTCCGGGAGCCACGGCTTCT ACTATCCAGATCCAGGCAGCCTTCCGGGAGCCACGGCTTCT < 41bp 1 0.274535364142705 1 0.071392685174942 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPSA ENSG00000168028 CDS Human protein_coding chr3:39452337 chr3:39452321 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_38080 0 0 0 0 1 Cytosol 1 0.500231643920793 1 0.999536712158414 hm5C_site_37541 DeepMRMD:1;iRNA_m5C:0.999536712158414 37542 chr11 19955499 19955499 1 + A T STAD 19955508 + 19955488 19955528 41 ACCAGGAATGAAAAGCATGCCCGGGAAATCCCCAAGTGCCC ACCAGGAATGATAAGCATGCCCGGGAAATCCCCAAGTGCCC < 41bp 1 0.274372870978272 1 0.334195405244827 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:19955508 chr11:19955499 nonsynonymous SNV 0.992 4 12 hm5C_associated_SNPs_38081 0 0 0 0 0 Nucleus 1 0.500231643919373 1 0.999536712161253 hm5C_site_37542 DeepMRMD:1;iRNA_m5C:0.999536712161253 37543 chr2 71795359 71795359 1 + T A STAD 71795352 + 71795332 71795372 41 GGGAACTGGGGCACAACGGGCCTCACCTACCCCAAGTTTTC GGGAACTGGGGCACAACGGGCCTCACCAACCCCAAGTTTTC < 41bp 1 0.115086695293018 1 0.0738644003868103 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71795352 chr2:71795359 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_38082 0 0 0 0 1 Nucleus 1 0.500231643920864 1 0.999536712158272 hm5C_site_37543 DeepMRMD:1;iRNA_m5C:0.999536712158272 37544 chrX 73046140 73046140 1 + A T STAD 73046124 - 73046104 73046144 41 TTTCTTTTGACCCCAGAAGCCCTAGACTGAGAAGATAAAAT TTTCATTTGACCCCAGAAGCCCTAGACTGAGAAGATAAAAT < 41bp 1 0.0175596473079011 1 0.171994477510452 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046124 chrX:73046140 . . 0 5 hm5C_associated_SNPs_38083 0 0 1 0 0 unknown 1 0.500231643712693 1 0.999536712574614 hm5C_site_37544 DeepMRMD:1;iRNA_m5C:0.999536712574614 37545 chrX 73046140 73046140 1 + A T STAD 73046131 - 73046111 73046151 41 TCAGTCCTTTCTTTTGACCCCAGAAGCCCTAGACTGAGAAG TCAGTCCTTTCATTTGACCCCAGAAGCCCTAGACTGAGAAG < 41bp 1 0.224991083394564 1 0.449099689722061 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046131 chrX:73046140 . . 0 12 hm5C_associated_SNPs_38084 0 0 1 0 0 unknown 1 0.500227565007583 1 0.999544869984835 hm5C_site_37545 DeepMRMD:1;iRNA_m5C:0.999544869984835 37546 chrX 73046140 73046140 1 + A T STAD 73046132 - 73046112 73046152 41 TTCAGTCCTTTCTTTTGACCCCAGAAGCCCTAGACTGAGAA TTCAGTCCTTTCATTTGACCCCAGAAGCCCTAGACTGAGAA < 41bp 1 0.124794366691235 1 0.389941304922104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046132 chrX:73046140 . . 0 13 hm5C_associated_SNPs_38085 0 0 1 0 0 unknown 1 0.500231643921088 1 0.999536712157824 hm5C_site_37546 DeepMRMD:1;iRNA_m5C:0.999536712157824 37547 chr19 49469092 49469092 1 + C G STAD 49469074 + 49469054 49469094 41 GCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAATTGGCCGA GCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAATTGGCGGA < 41bp 1 0.374120143926771 1 0.115731447935104 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FTL ENSG00000087086 CDS Human protein_coding chr19:49469074 chr19:49469092 synonymous SNV . 0 39 hm5C_associated_SNPs_38086 0 0 1 0 2 Cytosol 1 0.500231643921527 1 0.999536712156946 hm5C_site_37547 DeepMRMD:1;iRNA_m5C:0.999536712156946 37548 chr3 136665004 136665004 1 + T C STAD 136664991 + 136664971 136665011 41 GTTTGGAACCATCACCTCCACAGTGTGATTACATTAGGCCT GTTTGGAACCATCACCTCCACAGTGTGATTACACTAGGCCT < 41bp 1 0.621869582460501 1 0.187120735645294 experiment 0.756260835078998 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCK1 ENSG00000158092 CDS Human protein_coding chr3:136664991 chr3:136665004 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_38087 0 0 1 0 0 Ribosome 1 0.500231643934038 1 0.999536712131925 hm5C_site_37548 DeepMRMD:1;iRNA_m5C:0.999536712131925 37549 chr6 28056479 28056479 1 + C T STAD 28056468 + 28056448 28056488 41 TCTGGTGAGTCTCAAGACATCTGTAAGTCTGCAGGCAGGGT TCTGGTGAGTCTCAAGACATCTGTAAGTCTGTAGGCAGGGT < 41bp 1 0.629055545249809 1 0.223146677017212 experiment 0.741888909500383 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF165 ENSG00000197279 CDS Human protein_coding chr6:28056468 chr6:28056479 nonsynonymous SNV 0.005 0 32 hm5C_associated_SNPs_38088 0 0 0 0 0 Endoplasmic reticulum 1 0.500291637848197 1 0.999416724303606 hm5C_site_37549 DeepMRMD:1;iRNA_m5C:0.999416724303606 37550 chr10 118313341 118313341 1 + C T STAD 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACCATTGGATGCATCACAGGTT < 41bp 1 0.125128076183309 1 0.0616498291492462 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313341 nonsynonymous SNV 0.430 5 29 hm5C_associated_SNPs_38089 0 0 0 0 1 unknown 1 0.500232350790159 1 0.999535298419682 hm5C_site_37550 DeepMRMD:1;iRNA_m5C:0.999535298419682 37551 chr10 118313341 118313341 1 + C T STAD 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACCATTGGATGCATCACAGGTTG < 41bp 1 0.452780251739955 1 0.177345603704453 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313341 nonsynonymous SNV 0.430 5 28 hm5C_associated_SNPs_38090 0 0 0 0 1 unknown 1 0.500231643921085 1 0.999536712157829 hm5C_site_37551 DeepMRMD:1;iRNA_m5C:0.999536712157829 37552 chr14 89075670 89075670 1 + A G STAD 89075656 + 89075636 89075676 41 GAAAAATGTTTGTTTGTTCACCCAAATTGTAAATATGATGC GAAAAATGTTTGTTTGTTCACCCAAATTGTAAATGTGATGC < 41bp 1 0.489661728084371 1 0.0597593486309052 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89075656 chr14:89075670 nonsynonymous SNV 0.992 4 35 hm5C_associated_SNPs_38091 0 0 1 0 2 Nucleus 1 0.500264712704342 1 0.999470574591315 hm5C_site_37552 DeepMRMD:1;iRNA_m5C:0.999470574591315 37553 chr5 98115503 98115503 1 + G T STAD 98115483 + 98115463 98115503 41 CATTCTGCCGTGTTGGGTATCAGTGACCTCATGAGCCAGAG CATTCTGCCGTGTTGGGTATCAGTGACCTCATGAGCCAGAT < 41bp 1 0.539733022493516 1 0.743060350418091 experiment 0.920533955012967 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RGMB ENSG00000174136 CDS Human protein_coding chr5:98115483 chr5:98115503 nonsynonymous SNV 1.000 5 41 hm5C_associated_SNPs_38092 0 0 1 0 0 nucleus 1 0.500231643921093 0.513879299163818 0.999536712157815 hm5C_site_37553 DeepMRMD:0.513879299163818;iRNA_m5C:0.999536712157815 37554 chr13 114292018 114292018 1 + C T STAD 114292033 + 114292013 114292053 41 ATATCCGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGC ATATCTGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGC < 41bp 1 0.0785065746276663 1 0.0287375748157501 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114292033 chr13:114292018 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_38093 0 0 1 0 1 Cytosol 1 0.500231644360413 1 0.999536711279173 hm5C_site_37554 DeepMRMD:1;iRNA_m5C:0.999536711279173 37555 chr13 114292018 114292018 1 + C T STAD 114292034 + 114292014 114292054 41 TATCCGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGCG TATCTGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGCG < 41bp 1 0.211575124693724 1 0.027423232793808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114292034 chr13:114292018 nonsynonymous SNV . 0 5 hm5C_associated_SNPs_38094 0 0 1 0 1 Cytosol 1 0.500231643745786 1 0.999536712508427 hm5C_site_37555 DeepMRMD:1;iRNA_m5C:0.999536712508427 37556 chr2 73681186 73681186 1 + G A STAD 73681178 + 73681158 73681198 41 AATGCAGAGGAAGAGGAAAGCCGGGTACGAGCACATGGTAA AATGCAGAGGAAGAGGAAAGCCGGGTACAAGCACATGGTAA < 41bp 1 0.273926184971143 1 0.869483351707458 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ALMS1 ENSG00000116127 CDS Human protein_coding chr2:73681178 chr2:73681186 nonsynonymous SNV 0.908 2 29 hm5C_associated_SNPs_38095 0 0 0 0 1 Nucleus 1 0.500231643900687 0.261033296585084 0.999536712198625 hm5C_site_37556 DeepMRMD:0.261033296585084;iRNA_m5C:0.999536712198625 37557 chr22 23438372 23438372 1 + G A STAD 23438366 + 23438346 23438386 41 ACTACCTGAACGACCTGGAGCGCATCGCCGCAGCTGACTAT ACTACCTGAACGACCTGGAGCGCATCACCGCAGCTGACTAT < 41bp 1 0.201701399382029 1 0.110622376203537 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438366 chr22:23438372 nonsynonymous SNV 0.418 1 27 hm5C_associated_SNPs_38096 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37557 DeepMRMD:1;iRNA_m5C:0.999536712157815 37558 chr9 78506228 78506228 1 + C A STAD 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAAAATCGACGGGGGCTTCCCGGAGGCCAACCGTAT < 41bp 1 0.0461326180939786 1 0.0224162638187408 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506228 nonsynonymous SNV 0.999 0 14 hm5C_associated_SNPs_38097 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37558 DeepMRMD:1;iRNA_m5C:0.999536712157815 37559 chr8 104432678 104432678 1 + C T STAD 104432667 + 104432647 104432687 41 CCAGAGAAGCTGGCTACTGTCCTTTCTGGGGCGTGTGATGG CCAGAGAAGCTGGCTACTGTCCTTTCTGGGGTGTGTGATGG < 41bp 1 0.113923942271503 1 0.0489752888679504 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104432667 chr8:104432678 nonsynonymous SNV 0.998 3 32 hm5C_associated_SNPs_38098 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_37559 DeepMRMD:1;iRNA_m5C:0.999536712157815 37560 chr12 19427792 19427792 1 + T C STAD 19427793 + 19427773 19427813 41 CAGATCTTAGAGGTGGAAATCGCCCCAATACAGGGCCCTTA CAGATCTTAGAGGTGGAAACCGCCCCAATACAGGGCCCTTA < 41bp 1 0.366866589021971 1 0.33037656545639 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHA5 ENSG00000052126 CDS Human protein_coding chr12:19427793 chr12:19427792 synonymous SNV . 0 20 hm5C_associated_SNPs_38100 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_37560 DeepMRMD:1;iRNA_m5C:0.999536712157815 37561 chr5 112197085 112197085 1 + T A STAD 112197065 + 112197045 112197085 41 GCTCCTGGGTTGTTGAGACTCTTGTGAAGATGGCTTGCGCT GCTCCTGGGTTGTTGAGACTCTTGTGAAGATGGCTTGCGCA < 41bp 1 0.637791122148351 1 0.204233020544052 experiment 0.724417755703299 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRP19 ENSG00000153037;ENSG00000272869 CDS Human other chr5:112197065 chr5:112197085 synonymous SNV . 0 41 hm5C_associated_SNPs_38101 0 0 1 0 1 Ribosome 1 0.500231626848056 1 0.999536746303888 hm5C_site_37561 DeepMRMD:1;iRNA_m5C:0.999536746303888 37562 chr2 27449471 27449471 1 + T C STAD 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTC < 41bp 1 0.19025141094408 1 0.169943511486053 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449471 nonsynonymous SNV 0.998 5 41 hm5C_associated_SNPs_38102 0 0 1 0 2 Exosome 1 0.500231559225292 1 0.999536881549415 hm5C_site_37562 DeepMRMD:1;iRNA_m5C:0.999536881549415 37563 chr7 129394914 129394914 1 + G T STAD 129394901 + 129394881 129394921 41 ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGGGCAACGG ATGTACCAGACTGTGGTGACCAGCCTCGCCCAGTGCAACGG < 41bp 1 0.610130549116886 1 0.24925684928894 experiment 0.779738901766227 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394901 chr7:129394914 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_38103 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_37563 DeepMRMD:1;iRNA_m5C:0.999536712157814 37564 chr12 27908157 27908157 1 + A G STAD 27908142 + 27908122 27908162 41 AGAATGGGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGT AGAATGGGAAAAAAGTAAGACTGAAGCAGACATGGGAGAGT < 41bp 1 0.606331847562527 1 0.488257825374603 experiment 0.787336304874945 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908142 chr12:27908157 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_38104 0 0 1 0 1 Ribosome 1 0.500231654909748 1 0.999536690180503 hm5C_site_37564 DeepMRMD:1;iRNA_m5C:0.999536690180503 37565 chr12 27908157 27908157 1 + A G STAD 27908148 + 27908128 27908168 41 GGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGTATATAT GGAAAAAAGTAAGACTGAAGCAGACATGGGAGAGTATATAT < 41bp 1 0.493099839652107 1 0.749277651309967 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908148 chr12:27908157 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_38105 0 0 1 0 1 Ribosome 1 0.500231643921081 0.501444697380066 0.999536712157838 hm5C_site_37565 DeepMRMD:0.501444697380066;iRNA_m5C:0.999536712157838 37566 chr12 57627016 57627016 1 + G A STAD 57626998 + 57626978 57627018 41 CTACCGGAAAGGGGTGAAGGCTGTGGACCCCAAGACTGGCC CTACCGGAAAGGGGTGAAGGCTGTGGACCCCAAGACTGACC < 41bp 1 0.583523590569945 1 0.393198519945145 experiment 0.83295281886011 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626998 chr12:57627016 nonsynonymous SNV 0.995 4 39 hm5C_associated_SNPs_38106 0 0 1 0 1 Cytosol 1 0.500231643920282 1 0.999536712159436 hm5C_site_37566 DeepMRMD:1;iRNA_m5C:0.999536712159436 37567 chr12 57627016 57627016 1 + G A STAD 57627007 + 57626987 57627027 41 AGGGGTGAAGGCTGTGGACCCCAAGACTGGCCGGGAGATCC AGGGGTGAAGGCTGTGGACCCCAAGACTGACCGGGAGATCC < 41bp 1 0.331947729770479 1 0.559693038463593 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627007 chr12:57627016 nonsynonymous SNV 0.995 4 30 hm5C_associated_SNPs_38107 0 0 1 0 1 Cytosol 1 0.500231644514079 0.880613923072814 0.999536710971841 hm5C_site_37567 DeepMRMD:0.880613923072814;iRNA_m5C:0.999536710971841 37568 chrX 69519002 69519002 1 + C T STAD 69519014 + 69518994 69519034 41 GCCCATCTCGTGAGAAAGCTCAAATAAATATACGAGAGGAT GCCCATCTTGTGAGAAAGCTCAAATAAATATACGAGAGGAT < 41bp 1 0.154808599578365 1 0.37522479891777 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69519014 chrX:69519002 nonsynonymous SNV 0.999 0 9 hm5C_associated_SNPs_38108 0 0 0 0 2 chromatin 1 0.500231644212306 1 0.999536711575388 hm5C_site_37568 DeepMRMD:1;iRNA_m5C:0.999536711575388 37569 chr19 1434847 1434847 1 + G A STAD 1434836 + 1434816 1434856 41 TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGACGGCAGCGG < 41bp 1 0.29525283486208 1 0.173483580350876 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434836 chr19:1434847 nonsynonymous SNV 0.809 2 32 hm5C_associated_SNPs_38109 0 0 1 0 0 chromatin 1 0.500231643921161 1 0.999536712157679 hm5C_site_37569 DeepMRMD:1;iRNA_m5C:0.999536712157679 37570 chr19 1434847 1434847 1 + G A STAD 1434837 + 1434817 1434857 41 CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGACGGCAGCGGC < 41bp 1 0.407415226283012 1 0.108873754739761 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434837 chr19:1434847 nonsynonymous SNV 0.809 2 31 hm5C_associated_SNPs_38110 0 0 1 0 0 chromatin 1 0.500231643920448 1 0.999536712159103 hm5C_site_37570 DeepMRMD:1;iRNA_m5C:0.999536712159103 37571 chr19 1434847 1434847 1 + G A STAD 1434838 + 1434818 1434858 41 CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT CGTGCCAGGGTCGGGGGGCCCCCCCGCCGACGGCAGCGGCT < 41bp 1 0.507358654345504 1 0.40028578042984 experiment 0.985282691308992 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434838 chr19:1434847 nonsynonymous SNV 0.809 2 30 hm5C_associated_SNPs_38111 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37571 DeepMRMD:1;iRNA_m5C:0.999536712157815 37572 chr19 757482 757482 1 + C T STAD 757484 + 757464 757504 41 CCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTT CCGGCCCACCTCGGTCCATGCCCCTGGAGGAGAACGTGGTT < 41bp 1 0.228045242173885 1 0.132886469364166 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757484 chr19:757482 nonsynonymous SNV 0.000 0 19 hm5C_associated_SNPs_38113 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37572 DeepMRMD:1;iRNA_m5C:0.999536712157815 37573 chr19 757482 757482 1 + C T STAD 757485 + 757465 757505 41 CGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTG CGGCCCACCTCGGTCCATGCCCCTGGAGGAGAACGTGGTTG < 41bp 1 0.22299727805489 1 0.154906719923019 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757485 chr19:757482 nonsynonymous SNV 0.000 0 18 hm5C_associated_SNPs_38114 0 0 0 0 0 nucleus 1 0.500231590787569 1 0.999536818424862 hm5C_site_37573 DeepMRMD:1;iRNA_m5C:0.999536818424862 37574 chr19 757482 757482 1 + C T STAD 757486 + 757466 757506 41 GGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTGA GGCCCACCTCGGTCCATGCCCCTGGAGGAGAACGTGGTTGA < 41bp 1 0.31969489910466 1 0.446936428546906 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757486 chr19:757482 nonsynonymous SNV 0.000 0 17 hm5C_associated_SNPs_38115 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37574 DeepMRMD:1;iRNA_m5C:0.999536712157815 37575 chr6 133783615 133783615 1 + G A STAD 133783602 + 133783582 133783622 41 CAGACAGGACAGCCCTACAGCTTGCCCACTTACGGTATTTC CAGACAGGACAGCCCTACAGCTTGCCCACTTACAGTATTTC < 41bp 1 0.0685680865909605 1 0.0721545517444611 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783602 chr6:133783615 nonsynonymous SNV 0.994 4 34 hm5C_associated_SNPs_38117 0 0 0 0 1 Cytosol 1 0.500231627333283 1 0.999536745333435 hm5C_site_37575 DeepMRMD:1;iRNA_m5C:0.999536745333435 37576 chr11 64032904 64032904 1 + A G STAD 64032900 + 64032880 64032920 41 CATCAGCGGAAGGCAGTCACCCTCACCCGCCGCCTGCTGGA CATCAGCGGAAGGCAGTCACCCTCGCCCGCCGCCTGCTGGA < 41bp 1 0.143216921570265 1 0.0946547389030457 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64032900 chr11:64032904 nonsynonymous SNV 0.906 0 25 hm5C_associated_SNPs_38120 0 0 0 0 1 Ribosome 1 0.500232579875493 1 0.999534840249014 hm5C_site_37576 DeepMRMD:1;iRNA_m5C:0.999534840249014 37577 chr5 139060718 139060718 1 + G T STAD 139060711 + 139060691 139060731 41 GCTGTGGCAGGTGCCGAAGCCCTCAATGGCCAGTCCGACTT GCTGTGGCAGGTGCCGAAGCCCTCAATTGCCAGTCCGACTT < 41bp 1 0.485419168190447 1 0.183424115180969 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXXC5 ENSG00000171604 CDS Human protein_coding chr5:139060711 chr5:139060718 nonsynonymous SNV 0.996 4 28 hm5C_associated_SNPs_38121 0 0 1 0 0 Ribosome 1 0.500231464614611 1 0.999537070770779 hm5C_site_37577 DeepMRMD:1;iRNA_m5C:0.999537070770779 37578 chr6 133783599 133783599 1 + C A STAD 133783602 + 133783582 133783622 41 CAGACAGGACAGCCCTACAGCTTGCCCACTTACGGTATTTC CAGACAGGACAGCCCTAAAGCTTGCCCACTTACGGTATTTC < 41bp 1 0.115808852804516 1 0.0436031818389893 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783602 chr6:133783599 stopgain 1.000 1 18 hm5C_associated_SNPs_38122 0 0 0 0 1 Cytosol 1 0.500231643921273 1 0.999536712157455 hm5C_site_37578 DeepMRMD:1;iRNA_m5C:0.999536712157455 37579 chr2 46607469 46607469 1 + C T STAD 46607459 + 46607439 46607479 41 GCCCCATCTGCCCCGAGGAGCGGCTCTTGGCGGAGAACCCA GCCCCATCTGCCCCGAGGAGCGGCTCTTGGTGGAGAACCCA < 41bp 1 0.373868869859071 1 0.335495114326477 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607459 chr2:46607469 nonsynonymous SNV 0.024 0 31 hm5C_associated_SNPs_38123 0 0 1 0 0 Cytosol 1 0.500231643929068 1 0.999536712141863 hm5C_site_37579 DeepMRMD:1;iRNA_m5C:0.999536712141863 37580 chr2 24964684 24964684 1 + G A STAD 24964700 + 24964680 24964720 41 CAACGTCAGCGGGAACTGTACAGTCAACAGCACCGACAGAG CAACATCAGCGGGAACTGTACAGTCAACAGCACCGACAGAG < 41bp 1 0.286134093665881 1 0.353557169437408 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24964700 chr2:24964684 nonsynonymous SNV 0.996 1 5 hm5C_associated_SNPs_38124 0 0 1 0 0 Cytosol 1 0.500231643272103 1 0.999536713455795 hm5C_site_37580 DeepMRMD:1;iRNA_m5C:0.999536713455795 37581 chr3 185324165 185324165 1 + G A STAD 185324153 + 185324133 185324173 41 AGAAGGCTGTAATAGAAGACCAGGTGGCCGTCGCCATAGCA AGAAGGCTGTAATAGAAGACCAGGTGGCCGTCACCATAGCA < 41bp 1 0.645320770073676 1 0.521380960941315 experiment 0.709358459852647 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SENP2 ENSG00000163904 CDS Human protein_coding chr3:185324153 chr3:185324165 nonsynonymous SNV 0.997 1 33 hm5C_associated_SNPs_38125 0 0 1 0 1 Ribosome 1 0.50023164392111 0.95723807811737 0.999536712157781 hm5C_site_37581 DeepMRMD:0.95723807811737;iRNA_m5C:0.999536712157781 37582 chr7 22896252 22896252 1 + A T STAD 22896268 + 22896248 22896288 41 CTCTAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAA CTCTTATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAA < 41bp 1 0.0871802739300801 1 0.0590827465057373 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896268 chr7:22896252 . . 0 5 hm5C_associated_SNPs_38126 0 0 1 0 0 unknown 1 0.500230741838774 1 0.999538516322451 hm5C_site_37582 DeepMRMD:1;iRNA_m5C:0.999538516322451 37583 chr7 22896252 22896252 1 + A T STAD 22896271 + 22896251 22896291 41 TAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAAGGA TTATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAAGGA < 41bp 1 0.456169343930754 1 0.144567549228668 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896271 chr7:22896252 . . 0 2 hm5C_associated_SNPs_38127 0 0 1 0 0 unknown 1 0.500231127061429 1 0.999537745877143 hm5C_site_37583 DeepMRMD:1;iRNA_m5C:0.999537745877143 37584 chr1 39851472 39851472 1 + G A STAD 39851491 + 39851471 39851511 41 CGAGGTTAAGGAGGCTCAGACACTGTGCGATGAACTCTCAG CAAGGTTAAGGAGGCTCAGACACTGTGCGATGAACTCTCAG < 41bp 1 0.15905088575945 1 0.344105362892151 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39851491 chr1:39851472 nonsynonymous SNV 0.960 3 2 hm5C_associated_SNPs_38128 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920913 1 0.999536712158174 hm5C_site_37584 DeepMRMD:1;iRNA_m5C:0.999536712158174 37585 chr18 74620354 74620354 1 + G A STAD 74620335 + 74620315 74620355 41 AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATGC AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATAC < 41bp 1 0.46399761582666 1 0.193026214838028 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74620335 chr18:74620354 nonsynonymous SNV 0.183 0 40 hm5C_associated_SNPs_38129 0 0 1 0 1 Cytosol 1 0.500231643921282 1 0.999536712157435 hm5C_site_37585 DeepMRMD:1;iRNA_m5C:0.999536712157435 37586 chr7 892494 892494 1 + G A STAD 892492 + 892472 892512 41 CAATTTCTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA CAATTTCTTTTCGTTCTTGCCCATGTTGAACTGGGCAAGCA < 41bp 1 0.190253416044094 1 0.0531162619590759 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:892492 chr7:892494 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_38130 0 0 1 0 3 Endoplasmic reticulum 1 0.500231716671851 1 0.999536566656298 hm5C_site_37586 DeepMRMD:1;iRNA_m5C:0.999536566656298 37587 chr6 26156698 26156698 1 + C T STAD 26156707 + 26156687 26156727 41 GGCCCGCAAGTCTGCAGGTGCGGCCAAGCGCAAAGCGTCTG GGCCCGCAAGTTTGCAGGTGCGGCCAAGCGCAAAGCGTCTG < 41bp 1 0.522617536778492 1 0.102795273065567 experiment 0.954764926443016 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26156707 chr6:26156698 nonsynonymous SNV 0.760 1 12 hm5C_associated_SNPs_38131 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37587 DeepMRMD:1;iRNA_m5C:0.999536712157815 37588 chr19 48220237 48220237 1 + G A STAD 48220221 + 48220201 48220241 41 GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCCGCAAA GCAACGCCCTCGTCGTGGACCCGGACAAGCCCTTCCACAAA < 41bp 1 0.532796174668547 1 0.658066928386688 experiment 0.934407650662905 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EHD2 ENSG00000024422 CDS Human protein_coding chr19:48220221 chr19:48220237 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_38132 0 0 0 0 1 Nucleus 1 0.500231643921094 0.683866143226624 0.999536712157812 hm5C_site_37588 DeepMRMD:0.683866143226624;iRNA_m5C:0.999536712157812 37589 chr2 70096881 70096881 1 + G A STAD 70096880 + 70096860 70096900 41 CGTTGGACAGGTTTTAACTTCGGCTTCGACCTACTTGTAAC CGTTGGACAGGTTTTAACTTCAGCTTCGACCTACTTGTAAC < 41bp 1 0.528127628397042 1 0.14831730723381 experiment 0.943744743205916 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096880 chr2:70096881 nonsynonymous SNV 0.992 2 22 hm5C_associated_SNPs_38133 0 0 1 0 1 Cytosol 1 0.500231643921325 1 0.99953671215735 hm5C_site_37589 DeepMRMD:1;iRNA_m5C:0.99953671215735 37590 chr16 1395258 1395258 1 + G A STAD 1395256 + 1395236 1395276 41 CCCTCCCACCACAGGGACAGCCGCTCTCTGGCCCTGGCTGG CCCTCCCACCACAGGGACAGCCACTCTCTGGCCCTGGCTGG < 41bp 1 0.0991717429079716 1 0.0993765592575073 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1395256 chr16:1395258 nonsynonymous SNV 0.931 1 23 hm5C_associated_SNPs_38134 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37590 DeepMRMD:1;iRNA_m5C:0.999536712157815 37591 chr12 107237716 107237716 1 + C T STAD 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTTAAAGA < 41bp 1 0.125862435158548 1 0.283031851053238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237716 synonymous SNV . 0 36 hm5C_associated_SNPs_38135 0 0 0 1 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37591 DeepMRMD:1;iRNA_m5C:0.999536712157815 37592 chr11 68204455 68204455 1 + G A STAD 68204450 + 68204430 68204470 41 CCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTG CCCCGACTGTATCGACGGCTCCGACAAGCTCATGTGTGGTG < 41bp 1 0.108792920319756 1 0.105674684047699 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204450 chr11:68204455 nonsynonymous SNV 0.875 4 26 hm5C_associated_SNPs_38136 1 0 1 0 2 Endoplasmic reticulum 1 0.500231670866571 1 0.999536658266857 hm5C_site_37592 DeepMRMD:1;iRNA_m5C:0.999536658266857 Exudative vitreoretinopathy 4, autosomal recessive Exudative vitreoretinopathy 4, autosomal recessive 37593 chr11 68204455 68204455 1 + G A STAD 68204451 + 68204431 68204471 41 CCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTGGTGA CCCGACTGTATCGACGGCTCCGACAAGCTCATGTGTGGTGA < 41bp 1 0.539620163757533 1 0.61544668674469 experiment 0.920759672484935 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204451 chr11:68204455 nonsynonymous SNV 0.875 4 25 hm5C_associated_SNPs_38137 1 0 1 0 2 Endoplasmic reticulum 1 0.500231648460115 0.76910662651062 0.99953670307977 hm5C_site_37593 DeepMRMD:0.76910662651062;iRNA_m5C:0.99953670307977 Exudative vitreoretinopathy 4, autosomal recessive Exudative vitreoretinopathy 4, autosomal recessive 37594 chr9 130551706 130551706 1 + A G STAD 130551725 + 130551705 130551745 41 CATGTTCGAGTACTTGGCACCACCGCGCCGGAAGGGCAGCC CGTGTTCGAGTACTTGGCACCACCGCGCCGGAAGGGCAGCC < 41bp 1 0.562086073222873 1 0.470437854528427 experiment 0.875827853554254 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK9 ENSG00000136807 CDS Human protein_coding chr9:130551725 chr9:130551706 nonsynonymous SNV 0.996 1 2 hm5C_associated_SNPs_38138 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_37594 DeepMRMD:1;iRNA_m5C:0.999536712157815 37595 chr12 52695798 52695798 1 + G A STAD 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCATGGCA < 41bp 1 0.431461496021733 1 0.123003304004669 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695798 nonsynonymous SNV 0.483 1 36 hm5C_associated_SNPs_38139 0 0 0 0 0 nucleus 1 0.500234917777219 1 0.999530164445562 hm5C_site_37595 DeepMRMD:1;iRNA_m5C:0.999530164445562 37596 chr12 57919830 57919830 1 + G A STAD 57919812 + 57919792 57919832 41 TGCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTC TGCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCATC < 41bp 1 0.0632530167040852 1 0.0447620451450348 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919812 chr12:57919830 nonsynonymous SNV 0.979 0 39 hm5C_associated_SNPs_38140 0 0 1 0 0 chromatin 1 0.500231643887134 1 0.999536712225732 hm5C_site_37596 DeepMRMD:1;iRNA_m5C:0.999536712225732 37597 chr12 57919830 57919830 1 + G A STAD 57919813 + 57919793 57919833 41 GCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCC GCCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCATCC < 41bp 1 0.0808286570478731 1 0.0370832681655884 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919813 chr12:57919830 nonsynonymous SNV 0.979 0 38 hm5C_associated_SNPs_38141 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37597 DeepMRMD:1;iRNA_m5C:0.999536712157815 37598 chr12 57919830 57919830 1 + G A STAD 57919814 + 57919794 57919834 41 CCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCCC CCCAGGCACCCTCAGCTTCCCACTCCTCATCACTTCATCCC < 41bp 1 0.141636117248285 1 0.0387889742851257 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919814 chr12:57919830 nonsynonymous SNV 0.979 0 37 hm5C_associated_SNPs_38142 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37598 DeepMRMD:1;iRNA_m5C:0.999536712157815 37599 chr12 57919830 57919830 1 + G A STAD 57919816 + 57919796 57919836 41 CAGGCACCCTCAGCTTCCCACTCCTCATCACTTCGTCCCTC CAGGCACCCTCAGCTTCCCACTCCTCATCACTTCATCCCTC < 41bp 1 0.273140415830248 1 0.622811913490295 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919816 chr12:57919830 nonsynonymous SNV 0.979 0 35 hm5C_associated_SNPs_38143 0 0 1 0 0 chromatin 1 0.500231643921093 0.75437617301941 0.999536712157813 hm5C_site_37599 DeepMRMD:0.75437617301941;iRNA_m5C:0.999536712157813 37600 chr9 138395646 138395646 1 + G A STAD 138395653 + 138395633 138395673 41 TCTTTGGCCCCACGGTCCGCCTGCCGGACCTCATCATCTTC TCTTTGGCCCCACAGTCCGCCTGCCGGACCTCATCATCTTC < 41bp 1 0.382182673578004 1 0.0927354097366333 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MRPS2 ENSG00000122140 CDS Human protein_coding chr9:138395653 chr9:138395646 synonymous SNV . 0 14 hm5C_associated_SNPs_38144 0 0 1 0 0 Cytosol 1 0.50023164392103 1 0.999536712157939 hm5C_site_37600 DeepMRMD:1;iRNA_m5C:0.999536712157939 37601 chr20 47605105 47605105 1 + G T STAD 47605120 + 47605100 47605140 41 GAAGAGTATCTCTCAAGCATCTATGAAGAGATAGAAGGCAA GAAGATTATCTCTCAAGCATCTATGAAGAGATAGAAGGCAA < 41bp 1 0.205805250585215 1 0.117898851633072 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47605120 chr20:47605105 nonsynonymous SNV 0.961 1 6 hm5C_associated_SNPs_38145 0 0 1 0 1 Cytosol 1 0.500231644870552 1 0.999536710258895 hm5C_site_37601 DeepMRMD:1;iRNA_m5C:0.999536710258895 37602 chr19 10200705 10200705 1 + C T STAD 10200688 + 10200668 10200708 41 TTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCGCGTG TTGCCTGCTCCTCCTGCGACCACGTCTGGTGGCGCCGTGTG < 41bp 1 0.579225095002988 1 0.336541652679443 experiment 0.841549809994024 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200688 chr19:10200705 nonsynonymous SNV 0.950 0 38 hm5C_associated_SNPs_38146 0 0 1 0 1 Ribosome 1 0.500231637190362 1 0.999536725619276 hm5C_site_37602 DeepMRMD:1;iRNA_m5C:0.999536725619276 37603 chr3 193336664 193336664 1 + C T STAD 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCTGGAAGAAACGGCGTTTAGAGCAACAGATCGTG < 41bp 1 0.0505443014235245 1 0.045075386762619 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336664 nonsynonymous SNV 0.941 0 9 hm5C_associated_SNPs_38147 0 0 1 0 2 Nucleus 1 0.500231532255983 1 0.999536935488035 hm5C_site_37603 DeepMRMD:1;iRNA_m5C:0.999536935488035 37604 chr6 7578041 7578041 1 + C A STAD 7578027 + 7578007 7578047 41 TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGGA TGCAGGATTATGAGCTCCAGCTGGCCTCATACACATCAGGA < 41bp 1 0.218473126181494 1 0.411549299955368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DSP ENSG00000096696 CDS Human protein_coding chr6:7578027 chr6:7578041 synonymous SNV . 0 35 hm5C_associated_SNPs_38148 0 0 1 0 2 Nucleus 1 0.500262609649239 1 0.999474780701521 hm5C_site_37604 DeepMRMD:1;iRNA_m5C:0.999474780701521 37605 chr3 183885455 183885455 1 + G A STAD 183885453 + 183885433 183885473 41 CCTGAATCAGGGTTGGAGGTCCGTGACCGCATGTGGCTCAA CCTGAATCAGGGTTGGAGGTCCATGACCGCATGTGGCTCAA < 41bp 1 0.176716392273865 1 0.395664870738983 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DVL3 ENSG00000161202 CDS Human protein_coding chr3:183885453 chr3:183885455 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_38149 0 0 1 0 2 Cytosol 1 0.50023164384965 1 0.999536712300701 hm5C_site_37605 DeepMRMD:1;iRNA_m5C:0.999536712300701 37606 chr16 31131804 31131804 1 + G A STAD 31131787 + 31131767 31131807 41 GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCGCAA GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCACAA < 41bp 1 0.269649952599056 1 0.0729206502437592 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131787 chr16:31131804 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_38150 0 0 1 0 1 Ribosome 1 0.50023164387766 1 0.999536712244679 hm5C_site_37606 DeepMRMD:1;iRNA_m5C:0.999536712244679 37607 chr19 2271925 2271925 1 + G A STAD 2271919 + 2271899 2271939 41 GCAGCCTCTACATCGAGATCCCGGGCGGCGCGCTGCCCGAG GCAGCCTCTACATCGAGATCCCGGGCAGCGCGCTGCCCGAG < 41bp 1 0.694926408577948 1 0.875389039516449 experiment 0.610147182844104 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271919 chr19:2271925 nonsynonymous SNV 0.062 3 27 hm5C_associated_SNPs_38151 0 0 1 0 1 Ribosome 1 0.500231691384774 0.249221920967102 0.999536617230452 hm5C_site_37607 DeepMRMD:0.249221920967102;iRNA_m5C:0.999536617230452 37608 chr4 26407849 26407849 1 + C T STAD 26407834 + 26407814 26407854 41 ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTCTTCAT ATTTAAAAGAGCGAGGGGATCAAACAGTACTTATTTTTCAT < 41bp 1 0.272238900120393 1 0.235794544219971 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBPJ ENSG00000168214 CDS Human protein_coding chr4:26407834 chr4:26407849 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_38153 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157813 hm5C_site_37608 DeepMRMD:1;iRNA_m5C:0.999536712157813 37609 chr19 10561292 10561292 1 + G A STAD 10561299 + 10561279 10561319 41 GCGGTCCCCGCTGGGCGGCCCCACCCCTGTCTGCAAGGCCA GCGGTCCCCGCTGAGCGGCCCCACCCCTGTCTGCAAGGCCA < 41bp 1 0.0280309612525327 1 0.0551583170890808 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561299 chr19:10561292 nonsynonymous SNV 0.836 0 14 hm5C_associated_SNPs_38154 0 0 0 0 2 chromatin 1 0.500231656135395 1 0.99953668772921 hm5C_site_37609 DeepMRMD:1;iRNA_m5C:0.99953668772921 37610 chr12 4716511 4716511 1 + G A STAD 4716505 + 4716485 4716525 41 TTATTAAGGTGCTGGGTCTGCCGCCAGCCGGCTTCATTCAG TTATTAAGGTGCTGGGTCTGCCGCCAACCGGCTTCATTCAG < 41bp 1 0.234499260309086 1 0.248800873756409 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4716505 chr12:4716511 nonsynonymous SNV 0.108 0 27 hm5C_associated_SNPs_38155 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37610 DeepMRMD:1;iRNA_m5C:0.999536712157815 37611 chr8 1904965 1904965 1 + G A STAD 1904975 + 1904955 1904995 41 CAAATTCATCGTCCTGGCCACGGCTCTGCACGAGAAAGACA CAAATTCATCATCCTGGCCACGGCTCTGCACGAGAAAGACA < 41bp 1 0.178862130929348 1 0.0616053640842438 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1904975 chr8:1904965 nonsynonymous SNV 0.001 1 11 hm5C_associated_SNPs_38156 0 0 1 0 1 Nucleus 1 0.500231643327056 1 0.999536713345888 hm5C_site_37611 DeepMRMD:1;iRNA_m5C:0.999536713345888 37612 chr18 2667021 2667021 1 + A C STAD 2667024 + 2667004 2667044 41 ATGCCAGTGAAGGACAAAATCCTTTGCGTAAGTATCCCATT ATGCCAGTGAAGGACAACATCCTTTGCGTAAGTATCCCATT < 41bp 1 0.0365994015254653 1 0.0569356977939606 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2667024 chr18:2667021 nonsynonymous SNV 0.997 4 18 hm5C_associated_SNPs_38158 1 0 1 0 1 Nucleus 1 0.500231646397041 1 0.999536707205919 hm5C_site_37612 DeepMRMD:1;iRNA_m5C:0.999536707205919 Arhinia choanal atresia microphthalmia Arhinia choanal atresia microphthalmia 37613 chr3 25542770 25542770 1 + A C STAD 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGCCAATCCTGTCGACTCCAGAAGTGCTT < 41bp 1 0.255770313499094 1 0.105762988328934 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542770 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_38159 0 0 1 0 2 nucleoplasm 1 0.500231643923348 1 0.999536712153303 hm5C_site_37613 DeepMRMD:1;iRNA_m5C:0.999536712153303 37614 chr1 214813974 214813974 1 + G A STAD 214813977 + 214813957 214813997 41 AATATGAGAGCCTCAGGGATCTGCTAAAATCCAAAGATGCT AATATGAGAGCCTCAGGAATCTGCTAAAATCCAAAGATGCT < 41bp 1 0.33332575120499 1 0.560350835323334 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214813977 chr1:214813974 nonsynonymous SNV 0.989 1 18 hm5C_associated_SNPs_38160 0 0 1 0 0 Nucleus 1 0.500231643921626 0.879298329353332 0.999536712156748 hm5C_site_37614 DeepMRMD:0.879298329353332;iRNA_m5C:0.999536712156748 37615 chr12 124074954 124074954 1 + G A STAD 124074965 + 124074945 124074985 41 GTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAGAAT GTAAAGCACAAACAGGAATACATGGAAGTCCGGGAGAGAAT < 41bp 1 0.575940662087802 1 0.170207172632217 experiment 0.848118675824395 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074965 chr12:124074954 nonsynonymous SNV 0.997 2 10 hm5C_associated_SNPs_38161 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37615 DeepMRMD:1;iRNA_m5C:0.999536712157815 37616 chr7 98601919 98601919 1 + C T STAD 98601905 + 98601885 98601925 41 TCTTGGAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTC TCTTGGAGGCCAAGACCAAGCAACTCCCCAAATTTTTCCTC < 41bp 1 0.137210321758344 1 0.632133722305298 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98601905 chr7:98601919 synonymous SNV . 0 35 hm5C_associated_SNPs_38162 0 0 1 0 0 Nucleus 1 0.500231643921092 0.735732555389404 0.999536712157815 hm5C_site_37616 DeepMRMD:0.735732555389404;iRNA_m5C:0.999536712157815 37617 chr11 110333089 110333089 1 + G A STAD 110333093 + 110333073 110333113 41 TACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATC TACAGATCACGGTTGGACTGCCAAATCTGTTTGACAAAATC < 41bp 1 0.202680478733365 1 0.170680284500122 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333093 chr11:110333089 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_38163 0 0 1 0 1 Cytosol 1 0.500232961230675 1 0.99953407753865 hm5C_site_37617 DeepMRMD:1;iRNA_m5C:0.99953407753865 37618 chr11 110333089 110333089 1 + G A STAD 110333094 + 110333074 110333114 41 ACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATCT ACAGATCACGGTTGGACTGCCAAATCTGTTTGACAAAATCT < 41bp 1 0.215545733253297 1 0.379631042480469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333094 chr11:110333089 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_38164 0 0 1 0 1 Cytosol 1 0.500231558324655 1 0.99953688335069 hm5C_site_37618 DeepMRMD:1;iRNA_m5C:0.99953688335069 37619 chr16 81077066 81077066 1 + C T STAD 81077079 + 81077059 81077099 41 CTACAGCCGACTCCTCAGCCCAGCCTGTGGTGTTAGGTGTT CTACAGCTGACTCCTCAGCCCAGCCTGTGGTGTTAGGTGTT < 41bp 1 0.367693603932909 1 0.125967919826508 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81077079 chr16:81077066 synonymous SNV . 0 8 hm5C_associated_SNPs_38165 0 0 0 0 0 Cytosol 1 0.500231643921091 1 0.999536712157819 hm5C_site_37619 DeepMRMD:1;iRNA_m5C:0.999536712157819 37620 chr2 70096947 70096947 1 + C T STAD 70096964 + 70096944 70096984 41 CAGCCATGTAGCGGATCTGTCAGTTTACAGCCTCGAAGGAG CAGTCATGTAGCGGATCTGTCAGTTTACAGCCTCGAAGGAG < 41bp 1 0.409984393323799 1 0.190473675727844 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096964 chr2:70096947 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_38166 0 0 1 0 2 Cytosol 1 0.500231868530496 1 0.999536262939009 hm5C_site_37620 DeepMRMD:1;iRNA_m5C:0.999536262939009 37621 chr12 100732689 100732689 1 + C A STAD 100732676 + 100732656 100732696 41 AAGACCCACAGATATGTCTGCCCTTAATAATCTCTTTGGCC AAGACCCACAGATATGTCTGCCCTTAATAATCTATTTGGCC < 41bp 1 0.0439153565203231 1 0.0526111125946045 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732676 chr12:100732689 synonymous SNV . 0 34 hm5C_associated_SNPs_38167 0 0 0 0 0 chromatin 1 0.50023164392109 1 0.999536712157819 hm5C_site_37621 DeepMRMD:1;iRNA_m5C:0.999536712157819 37622 chr12 100732689 100732689 1 + C A STAD 100732687 + 100732667 100732707 41 ATATGTCTGCCCTTAATAATCTCTTTGGCCCTCAGAAACCC ATATGTCTGCCCTTAATAATCTATTTGGCCCTCAGAAACCC < 41bp 1 0.464448358358245 1 0.0718991458415985 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732687 chr12:100732689 synonymous SNV . 0 23 hm5C_associated_SNPs_38168 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37622 DeepMRMD:1;iRNA_m5C:0.999536712157815 37623 chr12 100732689 100732689 1 + C A STAD 100732695 + 100732675 100732715 41 GCCCTTAATAATCTCTTTGGCCCTCAGAAACCCAAAGTTAG GCCCTTAATAATCTATTTGGCCCTCAGAAACCCAAAGTTAG < 41bp 1 0.0667442727341293 1 0.025150328874588 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732695 chr12:100732689 synonymous SNV . 0 15 hm5C_associated_SNPs_38169 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37623 DeepMRMD:1;iRNA_m5C:0.999536712157815 37624 chr12 100732689 100732689 1 + C A STAD 100732697 + 100732677 100732717 41 CCTTAATAATCTCTTTGGCCCTCAGAAACCCAAAGTTAGCA CCTTAATAATCTATTTGGCCCTCAGAAACCCAAAGTTAGCA < 41bp 1 0.27728931291447 1 0.0481831133365631 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732697 chr12:100732689 synonymous SNV . 0 13 hm5C_associated_SNPs_38170 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37624 DeepMRMD:1;iRNA_m5C:0.999536712157815 37625 chr12 100732689 100732689 1 + C A STAD 100732699 + 100732679 100732719 41 TTAATAATCTCTTTGGCCCTCAGAAACCCAAAGTTAGCATG TTAATAATCTATTTGGCCCTCAGAAACCCAAAGTTAGCATG < 41bp 1 0.670690471810851 1 0.786917567253113 experiment 0.658619056378299 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732699 chr12:100732689 synonymous SNV . 0 11 hm5C_associated_SNPs_38171 0 0 0 0 0 chromatin 1 0.500231643921092 0.426164865493774 0.999536712157815 hm5C_site_37625 DeepMRMD:0.426164865493774;iRNA_m5C:0.999536712157815 37626 chr15 41554990 41554990 1 + T G STAD 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCGAACGTTGGCTCATTTCCGC < 41bp 1 0.301681333199461 1 0.383933186531067 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41554990 synonymous SNV . 0 26 hm5C_associated_SNPs_38172 0 0 1 0 2 Ribosome 1 0.500217895211743 1 0.999564209576514 hm5C_site_37626 DeepMRMD:1;iRNA_m5C:0.999564209576514 37627 chr2 32640623 32640623 1 + A C STAD 32640607 + 32640587 32640627 41 TTCATTTGTTGGTAGGACTGCGGACATGCCCTGTTGAATCC TTCATTTGTTGGTAGGACTGCGGACATGCCCTGTTGCATCC < 41bp 1 0.129753364345733 1 0.480614811182022 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32640607 chr2:32640623 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_38173 0 0 1 0 0 Nucleus 1 0.500231643921258 1 0.999536712157485 hm5C_site_37627 DeepMRMD:1;iRNA_m5C:0.999536712157485 37628 chr20 32660006 32660006 1 + C T STAD 32660003 + 32659983 32660023 41 AAATCAGATGTGGAGACCATCTTCTCTAAGTATGGCCGTGT AAATCAGATGTGGAGACCATCTTTTCTAAGTATGGCCGTGT < 41bp 1 0.0738579150075995 1 0.0572622716426849 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32660003 chr20:32660006 synonymous SNV . 0 24 hm5C_associated_SNPs_38174 0 0 1 0 0 Cytosol 1 0.500231643921095 1 0.999536712157811 hm5C_site_37628 DeepMRMD:1;iRNA_m5C:0.999536712157811 37629 chr21 30422460 30422460 1 + A C STAD 30422456 + 30422436 30422476 41 TAACAAACACATAAAGTTTCCGGAAATCTTAGATTTGGCTC TAACAAACACATAAAGTTTCCGGACATCTTAGATTTGGCTC < 41bp 1 0.407988954614947 1 0.472364336252213 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30422456 chr21:30422460 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_38175 0 0 1 0 2 Ribosome 1 0.500231624057879 1 0.999536751884242 hm5C_site_37629 DeepMRMD:1;iRNA_m5C:0.999536751884242 37630 chr22 24468452 24468452 1 + C T STAD 24468439 + 24468419 24468459 41 CTCTGTGCCACCAGCAGCAGCTCCAAAACCCAGCGGAGGAA CTCTGTGCCACCAGCAGCAGCTCCAAAACCCAGTGGAGGAA < 41bp 1 0.414583159205801 1 0.896915435791016 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24468439 chr22:24468452 nonsynonymous SNV 0.957 0 34 hm5C_associated_SNPs_38176 0 0 0 0 1 Cytosol 1 0.500231643928486 0.206169128417968 0.999536712143028 hm5C_site_37630 DeepMRMD:0.206169128417968;iRNA_m5C:0.999536712143028 37631 chr20 30526969 30526969 1 + C T STAD 30526975 + 30526955 30526995 41 AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA AGGGAGAAGCGAGTTGGGGGCTTTGACCTCATGTGGAATGA < 41bp 1 0.206309313218407 1 0.107047021389008 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30526975 chr20:30526969 synonymous SNV . 0 15 hm5C_associated_SNPs_38177 0 0 0 0 1 exosome 1 0.500231643921924 1 0.999536712156152 hm5C_site_37631 DeepMRMD:1;iRNA_m5C:0.999536712156152 37632 chr16 4383520 4383520 1 + G A STAD 4383504 + 4383484 4383524 41 GGGCAACGGGGACCTGCCTCCAGTGCCCAGTGCCTCGGTAA GGGCAACGGGGACCTGCCTCCAGTGCCCAGTGCCTCAGTAA < 41bp 1 0.544161591701251 1 0.864855766296387 experiment 0.911676816597499 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4383504 chr16:4383520 synonymous SNV . 0 37 hm5C_associated_SNPs_38178 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.270288467407226 0.999536712157815 hm5C_site_37632 DeepMRMD:0.270288467407226;iRNA_m5C:0.999536712157815 37633 chr3 183854515 183854515 1 + A C STAD 183854500 + 183854480 183854520 41 TGTCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGAACATT TGTCTTTTGTTGCTGGAAAGCTGCTCAAATCAAAGCACATT < 41bp 1 0.393134203646239 1 0.339789092540741 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183854500 chr3:183854515 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_38179 0 0 1 0 1 Ribosome 1 0.500231643923974 1 0.999536712152053 hm5C_site_37633 DeepMRMD:1;iRNA_m5C:0.999536712152053 37634 chr1 214794191 214794191 1 + G A STAD 214794185 + 214794165 214794205 41 TGGGGAACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAA TGGGGAACAAGAGGTGACTCCAAGTCAATCAACTTTGCAAA < 41bp 1 0.315306458924209 1 0.144644975662231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794185 chr1:214794191 nonsynonymous SNV 0.001 1 27 hm5C_associated_SNPs_38180 0 0 1 0 1 Nucleus 1 0.500528499523397 1 0.998943000953206 hm5C_site_37634 DeepMRMD:1;iRNA_m5C:0.998943000953206 37635 chr1 214794191 214794191 1 + G A STAD 214794190 + 214794170 214794210 41 AACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAATAGGG AACAAGAGGTGACTCCAAGTCAATCAACTTTGCAAATAGGG < 41bp 1 0.0715058426142679 1 0.218247324228287 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794190 chr1:214794191 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_38181 0 0 1 0 1 Nucleus 1 0.500231645083948 1 0.999536709832103 hm5C_site_37635 DeepMRMD:1;iRNA_m5C:0.999536709832103 37636 chr17 66251928 66251928 1 + G T STAD 66251944 + 66251924 66251964 41 GGAAGAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT GGAATAAGCTGACCGGCGCCCTCTAAACCTTTGCCCTATCT < 41bp 1 0.629928458053915 1 0.808209657669067 experiment 0.74014308389217 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control AMZ2 ENSG00000196704 CDS Human protein_coding chr17:66251944 chr17:66251928 stopgain 0.997 1 5 hm5C_associated_SNPs_38182 0 0 1 0 2 Ribosome 1 0.500231643921092 0.383580684661866 0.999536712157815 hm5C_site_37636 DeepMRMD:0.383580684661866;iRNA_m5C:0.999536712157815 37637 chr9 133738166 133738166 1 + A G STAD 133738171 + 133738151 133738191 41 TCTACGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAG TCTACGTCTCCTCCGGGAGCCGCTTCAACACCCTGGCCGAG < 41bp 1 0.124391585337043 1 0.197139710187912 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133738171 chr9:133738166 nonsynonymous SNV 0.997 3 16 hm5C_associated_SNPs_38183 0 0 1 0 1 Endoplasmic reticulum 1 0.500231648570012 1 0.999536702859976 hm5C_site_37637 DeepMRMD:1;iRNA_m5C:0.999536702859976 37638 chr11 94554964 94554964 1 + G A STAD 94554949 + 94554929 94554969 41 ACCGGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT ACCGGGTGCTTCACCAGGAACTTCAGGGTTACTACAACAAT < 41bp 1 0.317321025121331 1 0.139560341835022 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94554949 chr11:94554964 nonsynonymous SNV 0.996 1 36 hm5C_associated_SNPs_38184 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37638 DeepMRMD:1;iRNA_m5C:0.999536712157815 37639 chr2 131801887 131801887 1 + G A STAD 131801875 + 131801855 131801895 41 AGGCCAGCATCTGGCAGGACCTGCTCCGCCGCGACGTGTTG AGGCCAGCATCTGGCAGGACCTGCTCCGCCGCAACGTGTTG < 41bp 1 0.165115317961873 1 0.087157815694809 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131801875 chr2:131801887 nonsynonymous SNV 0.994 2 33 hm5C_associated_SNPs_38185 0 0 0 0 1 nucleus 1 0.500231644231025 1 0.99953671153795 hm5C_site_37639 DeepMRMD:1;iRNA_m5C:0.99953671153795 37640 chr5 179195995 179195995 1 + T C STAD 179195992 + 179195972 179196012 41 CCGCTGTAATGAAGCAGCATCAGTTGCTTTTGGACCAACAG CCGCTGTAATGAAGCAGCATCAGCTGCTTTTGGACCAACAG < 41bp 1 0.176041088171902 1 0.67532342672348 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAML1 ENSG00000161021 CDS Human protein_coding chr5:179195992 chr5:179195995 synonymous SNV . 0 24 hm5C_associated_SNPs_38186 0 0 1 0 1 Ribosome 1 0.50023037835636 0.64935314655304 0.99953924328728 hm5C_site_37640 DeepMRMD:0.64935314655304;iRNA_m5C:0.99953924328728 37641 chr7 98591318 98591318 1 + C T STAD 98591325 + 98591305 98591345 41 CCCTGGAAGGCATCGTCGATCAGATGGTCTGGTTCAGAGAA CCCTGGAAGGCATTGTCGATCAGATGGTCTGGTTCAGAGAA < 41bp 1 0.276876101426539 1 0.348194301128387 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98591325 chr7:98591318 synonymous SNV . 0 14 hm5C_associated_SNPs_38187 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_37641 DeepMRMD:1;iRNA_m5C:0.999536712157815 37642 chr7 70252212 70252212 1 + G A STAD 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTCAGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA < 41bp 1 0.140760061247058 1 0.0729379951953888 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252212 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_38188 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37642 DeepMRMD:1;iRNA_m5C:0.999536712157815 37643 chr19 1453554 1453554 1 + C A STAD 1453535 + 1453515 1453555 41 GGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCT GGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGAT < 41bp 1 0.18435139487232 1 0.456391543149948 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453535 chr19:1453554 nonsynonymous SNV 0.919 1 40 hm5C_associated_SNPs_38189 0 0 0 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37643 DeepMRMD:1;iRNA_m5C:0.999536712157815 37644 chr19 1453554 1453554 1 + C A STAD 1453536 + 1453516 1453556 41 GGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTT GGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGATT < 41bp 1 0.15730620188093 1 0.590364575386047 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453536 chr19:1453554 nonsynonymous SNV 0.919 1 39 hm5C_associated_SNPs_38190 0 0 0 0 1 nucleolus 1 0.500231643921834 0.819270849227906 0.999536712156331 hm5C_site_37644 DeepMRMD:0.819270849227906;iRNA_m5C:0.999536712156331 37645 chr19 1453554 1453554 1 + C A STAD 1453540 + 1453520 1453560 41 GCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGG GCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGATTTGGG < 41bp 1 0.0109742518321837 1 0.127044320106506 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453540 chr19:1453554 nonsynonymous SNV 0.919 1 35 hm5C_associated_SNPs_38191 0 0 0 0 1 nucleolus 1 0.500231643921093 1 0.999536712157815 hm5C_site_37645 DeepMRMD:1;iRNA_m5C:0.999536712157815 37646 chr19 1453554 1453554 1 + C A STAD 1453541 + 1453521 1453561 41 CCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGGG CCCAGTACACGGCTCCGGGCCCTCCAAGGACAGATTTGGGG < 41bp 1 0.0115519773263249 1 0.117984354496002 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453541 chr19:1453554 nonsynonymous SNV 0.919 1 34 hm5C_associated_SNPs_38192 0 0 0 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37646 DeepMRMD:1;iRNA_m5C:0.999536712157815 37647 chr16 53504328 53504328 1 + T G STAD 53504331 + 53504311 53504351 41 TGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGG TGGAGGGATAACATTCTGCCCTGTCCAAGTCAATGTTGGGG < 41bp 1 0.0733025844758525 1 0.0846821069717407 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBL2 ENSG00000103479 CDS Human protein_coding chr16:53504331 chr16:53504328 nonsynonymous SNV 0.995 4 18 hm5C_associated_SNPs_38193 0 0 1 0 1 Ribosome 1 0.500231650399293 1 0.999536699201414 hm5C_site_37647 DeepMRMD:1;iRNA_m5C:0.999536699201414 37648 chr12 52636852 52636852 1 + G A STAD 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCTCCGGAATACCCGAAATGAGAT < 41bp 1 0.621313568440678 1 0.789536416530609 experiment 0.757372863118645 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636852 synonymous SNV . 0 33 hm5C_associated_SNPs_38194 0 0 0 0 2 Cytosol 1 0.500231537012015 0.420927166938782 0.999536925975969 hm5C_site_37648 DeepMRMD:0.420927166938782;iRNA_m5C:0.999536925975969 37649 chr12 52636852 52636852 1 + G A STAD 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCTCCGGAATACCCGAAATGAGATT < 41bp 1 0.631901874845483 1 0.886632084846497 experiment 0.736196250309034 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636852 synonymous SNV . 0 32 hm5C_associated_SNPs_38195 0 0 0 0 2 Cytosol 1 0.500231643921093 0.226735830307006 0.999536712157815 hm5C_site_37649 DeepMRMD:0.226735830307006;iRNA_m5C:0.999536712157815 37650 chr11 65826323 65826323 1 + G A STAD 65826306 + 65826286 65826326 41 TCCTCCTCTTGACAGAAAAACCGGAAGCGTAGGAACCGAAA TCCTCCTCTTGACAGAAAAACCGGAAGCGTAGGAACCAAAA < 41bp 1 0.609241926839444 1 0.460388630628586 experiment 0.781516146321112 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826306 chr11:65826323 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_38196 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37650 DeepMRMD:1;iRNA_m5C:0.999536712157815 37651 chr21 38853084 38853084 1 + C T STAD 38853089 + 38853069 38853109 41 GAAAAGTGGATGGATCGTTACGAAATTGACTCCTTGATAGG GAAAAGTGGATGGATTGTTACGAAATTGACTCCTTGATAGG < 41bp 1 0.652624730599466 1 0.835838794708252 experiment 0.694750538801068 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38853089 chr21:38853084 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_38197 0 0 1 0 1 Cytosol 1 0.500231643724382 0.328322410583496 0.999536712551237 hm5C_site_37651 DeepMRMD:0.328322410583496;iRNA_m5C:0.999536712551237 37652 chr15 89849327 89849327 1 + G A STAD 89849336 + 89849316 89849356 41 CATTTTTCCACGAGCTGGTGCAGACAGCTCTGCCATCAGGC CATTTTTCCACAAGCTGGTGCAGACAGCTCTGCCATCAGGC < 41bp 1 0.0891829123904439 1 0.431749820709229 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89849336 chr15:89849327 nonsynonymous SNV 0.975 5 12 hm5C_associated_SNPs_38198 0 0 1 0 3 Nucleus 1 0.500231643887952 1 0.999536712224096 hm5C_site_37652 DeepMRMD:1;iRNA_m5C:0.999536712224096 37653 chr10 17277206 17277206 1 + G T STAD 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGATAACTTT < 41bp 1 0.634968162243528 1 0.370715618133545 experiment 0.730063675512945 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277206 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_38199 0 0 1 0 1 Ribosome 1 0.50022844077383 1 0.999543118452341 hm5C_site_37653 DeepMRMD:1;iRNA_m5C:0.999543118452341 37654 chr18 8638257 8638257 1 + T C STAD 8638254 + 8638234 8638274 41 CCAAGACCACATGTCCGATGCTGTTGATTTCCTACTTTGGA CCAAGACCACATGTCCGATGCTGCTGATTTCCTACTTTGGA < 41bp 1 0.375504194307657 1 0.10660383105278 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB12 ENSG00000206418 CDS Human protein_coding chr18:8638254 chr18:8638257 synonymous SNV . 0 24 hm5C_associated_SNPs_38200 0 0 1 0 0 Ribosome 1 0.50023164394177 1 0.99953671211646 hm5C_site_37654 DeepMRMD:1;iRNA_m5C:0.99953671211646 37655 chr11 86947710 86947710 1 + T C STAD 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTGCATCACAGCTGCCATGCACATGTTCTTTTTCAG < 41bp 1 0.0363521855726596 1 0.0440269410610199 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947710 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_38201 0 0 1 0 2 Ribosome 1 0.50023172411349 1 0.99953655177302 hm5C_site_37655 DeepMRMD:1;iRNA_m5C:0.99953655177302 37656 chr10 134016247 134016247 1 + T G STAD 134016266 + 134016246 134016286 41 TTTGTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC TGTGTCACCCCGGGGGCGGGCCGCTTCGTCCCTCGGAAAAC < 41bp 1 0.207615975765075 1 0.3196981549263 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016266 chr10:134016247 nonsynonymous SNV 0.005 0 2 hm5C_associated_SNPs_38202 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921446 1 0.999536712157107 hm5C_site_37656 DeepMRMD:1;iRNA_m5C:0.999536712157107 37657 chr7 94043236 94043236 1 + C T STAD 94043239 + 94043219 94043259 41 GAAAAGGTGAACAGGGTCCCCCTGGTCCTCCAGGCTTCCAG GAAAAGGTGAACAGGGTTCCCCTGGTCCTCCAGGCTTCCAG < 41bp 1 0.223020638860068 1 0.106045335531235 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94043239 chr7:94043236 nonsynonymous SNV 0.983 4 18 hm5C_associated_SNPs_38203 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_37657 DeepMRMD:1;iRNA_m5C:0.999536712157815 37658 chr6 109763764 109763764 1 + C T STAD 109763767 + 109763747 109763787 41 TCCATGCCGAATACAATCGACAGAAGGACATCTACCTAGCA TCCATGCCGAATACAATTGACAGAAGGACATCTACCTAGCA < 41bp 1 0.624984966883234 1 0.408196300268173 experiment 0.750030066233532 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763767 chr6:109763764 stopgain 0.332 1 18 hm5C_associated_SNPs_38204 0 0 1 0 2 chromatin 1 0.50023164493595 1 0.999536710128099 hm5C_site_37658 DeepMRMD:1;iRNA_m5C:0.999536710128099 37659 chr17 38320029 38320029 1 + G T STAD 38320033 + 38320013 38320053 41 GCAGACTTCTGTGAGGGATCCATCTCCAGAAGCAGATGCTC GCAGACTTCTGTGAGGTATCCATCTCCAGAAGCAGATGCTC < 41bp 1 0.211344927257491 1 0.026223361492157 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320033 chr17:38320029 nonsynonymous SNV 0.999 2 17 hm5C_associated_SNPs_38205 0 0 1 0 0 Ribosome 1 0.500231643921083 1 0.999536712157833 hm5C_site_37659 DeepMRMD:1;iRNA_m5C:0.999536712157833 37660 chr6 26204985 26204985 1 + T A STAD 26204977 + 26204957 26204997 41 GGCATTACCAAGCCTGCCATCCGGCGCCTTGCTCGTCGCGG GGCATTACCAAGCCTGCCATCCGGCGCCATGCTCGTCGCGG < 41bp 1 0.61508789182542 1 0.920441269874573 experiment 0.76982421634916 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIST1H4E ENSG00000198518 CDS Human other chr6:26204977 chr6:26204985 nonsynonymous SNV 0.044 0 29 hm5C_associated_SNPs_38206 0 0 1 0 0 Nucleus 1 0.500231643921093 0.159117460250854 0.999536712157815 hm5C_site_37660 DeepMRMD:0.159117460250854;iRNA_m5C:0.999536712157815 37661 chr11 61898025 61898025 1 + G C STAD 61898007 + 61897987 61898027 41 AGTGTTGTCCGCAGGGCGAGCAGAAGGCTTGCCAAGAAGAC AGTGTTGTCCGCAGGGCGAGCAGAAGGCTTGCCAAGAACAC < 41bp 1 0.658306751568013 1 0.709370315074921 experiment 0.683386496863974 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61898007 chr11:61898025 nonsynonymous SNV 0.404 2 39 hm5C_associated_SNPs_38207 0 0 1 0 1 chromatin 1 0.500231643921461 0.581259369850158 0.999536712157078 hm5C_site_37661 DeepMRMD:0.581259369850158;iRNA_m5C:0.999536712157078 37662 chr11 61898025 61898025 1 + G C STAD 61898018 + 61897998 61898038 41 CAGGGCGAGCAGAAGGCTTGCCAAGAAGACTGCCGAAGAGC CAGGGCGAGCAGAAGGCTTGCCAAGAACACTGCCGAAGAGC < 41bp 1 0.158065249453241 1 0.163791745901108 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61898018 chr11:61898025 nonsynonymous SNV 0.404 2 28 hm5C_associated_SNPs_38208 0 0 1 0 1 chromatin 1 0.500231643264477 1 0.999536713471046 hm5C_site_37662 DeepMRMD:1;iRNA_m5C:0.999536713471046 37663 chr17 78350178 78350178 1 + G A STAD 78350171 + 78350151 78350191 41 TCCTGATATCAGCCGTTTTGCAACATCGCTCGTGGACAATT TCCTGATATCAGCCGTTTTGCAACATCACTCGTGGACAATT < 41bp 1 0.18137390220674 1 0.15517857670784 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78350171 chr17:78350178 synonymous SNV . 0 28 hm5C_associated_SNPs_38209 0 0 1 0 1 Nucleus 1 0.500231643921099 1 0.999536712157802 hm5C_site_37663 DeepMRMD:1;iRNA_m5C:0.999536712157802 37664 chr14 103802217 103802217 1 + G T STAD 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACCTCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG < 41bp 1 0.160832955378041 1 0.0617451369762421 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802217 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_38210 0 0 1 0 1 Cytosol 1 0.500231641780617 1 0.999536716438766 hm5C_site_37664 DeepMRMD:1;iRNA_m5C:0.999536716438766 37665 chr8 145535505 145535505 1 + C T STAD 145535495 + 145535475 145535515 41 GGCTCCTGCCAGCCCCATGGCCTCCCCCGGCGGGAGCATAG GGCTCCTGCCAGCCCCATGGCCTCCCCCGGTGGGAGCATAG < 41bp 1 0.0279241463439867 1 0.0934485793113708 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535495 chr8:145535505 synonymous SNV . 0 31 hm5C_associated_SNPs_38211 0 0 1 0 1 chromatin 1 0.500231643921094 1 0.999536712157812 hm5C_site_37665 DeepMRMD:1;iRNA_m5C:0.999536712157812 37666 chr5 112164562 112164562 1 + A G STAD 112164560 + 112164540 112164580 41 GATTAATTTGCAGGTTATTGCGAGTGTTTTGAGGAATTTGT GATTAATTTGCAGGTTATTGCGGGTGTTTTGAGGAATTTGT < 41bp 1 0.253589540685559 1 0.480774372816086 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APC ENSG00000134982;ENSG00000258864 CDS Human other chr5:112164560 chr5:112164562 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_38212 0 0 1 0 1 Cytosol 1 0.500231643921231 1 0.999536712157537 hm5C_site_37666 DeepMRMD:1;iRNA_m5C:0.999536712157537 37667 chr2 158152294 158152294 1 + A G STAD 158152276 + 158152256 158152296 41 GTAGAAAGAAAGTGGCCTGTCCAGTAATCGAAGTCATCAAT GTAGAAAGAAAGTGGCCTGTCCAGTAATCGAAGTCATCGAT < 41bp 1 0.266381531786191 1 0.258391857147217 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158152276 chr2:158152294 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_38213 0 0 0 0 1 Exosome 1 0.500231302986154 1 0.999537394027692 hm5C_site_37667 DeepMRMD:1;iRNA_m5C:0.999537394027692 37668 chr19 11032425 11032425 1 + G A STAD 11032439 + 11032419 11032459 41 CACTACGGGAGCTAGGGGCCCGCCCCGCGGACTGACAGCAC CACTACAGGAGCTAGGGGCCCGCCCCGCGGACTGACAGCAC < 41bp 1 0.361034277342656 1 0.258675217628479 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CARM1 ENSG00000142453 CDS Human protein_coding chr19:11032439 chr19:11032425 nonsynonymous SNV 0.994 2 7 hm5C_associated_SNPs_38214 0 0 1 0 0 Ribosome 1 0.50023164392108 1 0.99953671215784 hm5C_site_37668 DeepMRMD:1;iRNA_m5C:0.99953671215784 37669 chr19 39870619 39870619 1 + C T STAD 39870630 + 39870610 39870650 41 TCACGGAGACGCAGAAGAAACGGCTGCTATCCTGGAAACAG TCACGGAGATGCAGAAGAAACGGCTGCTATCCTGGAAACAG < 41bp 1 0.645955591336087 1 0.403398454189301 experiment 0.708088817327826 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39870630 chr19:39870619 nonsynonymous SNV 0.998 3 10 hm5C_associated_SNPs_38216 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37669 DeepMRMD:1;iRNA_m5C:0.999536712157815 37670 chrX 47774350 47774350 1 + A G STAD 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAAGCCTTCCCGGAGGAGAATTTCTGGGAA < 41bp 1 0.349687806257878 1 0.591449856758118 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774350 nonsynonymous SNV 0.525 0 23 hm5C_associated_SNPs_38217 0 0 1 0 1 cytosol 1 0.500231643921092 0.817100286483764 0.999536712157815 hm5C_site_37670 DeepMRMD:0.817100286483764;iRNA_m5C:0.999536712157815 37671 chr14 103802238 103802238 1 + A G STAD 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACCGCAGCGTGTCAGACCAGTTCTGTCGCTACAAGATG < 41bp 1 0.209003480637926 1 0.0598872303962708 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802238 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_38218 0 0 1 0 1 Cytosol 1 0.500231643359051 1 0.999536713281897 hm5C_site_37671 DeepMRMD:1;iRNA_m5C:0.999536713281897 37672 chr7 138944059 138944059 1 + G A STAD 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGATGAAGAAGCGGAAGCAGAAAGAGGAAGGGGAAAAG < 41bp 1 0.458810283241104 1 0.396406710147858 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944059 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_38219 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37672 DeepMRMD:1;iRNA_m5C:0.999536712157815 37673 chr11 44626950 44626950 1 + G A STAD 44626956 + 44626936 44626976 41 CCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGC CCCAGGTGACGGCCAGGGCCCTCTTCTACTTCAACATGGGC < 41bp 1 0.0977942301550112 1 0.0273120403289795 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44626956 chr11:44626950 nonsynonymous SNV 0.004 5 15 hm5C_associated_SNPs_38220 0 0 1 0 2 Nucleus 1 0.500231669739402 1 0.999536660521196 hm5C_site_37673 DeepMRMD:1;iRNA_m5C:0.999536660521196 37674 chr8 121259946 121259946 1 + C A STAD 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGATATA < 41bp 1 0.0630766027049377 1 0.0982012748718262 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259946 synonymous SNV . 0 37 hm5C_associated_SNPs_38221 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37674 DeepMRMD:1;iRNA_m5C:0.999536712157815 37675 chr8 121259946 121259946 1 + C A STAD 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGATATAGAAT < 41bp 1 0.354479797959067 1 0.127969592809677 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259946 synonymous SNV . 0 33 hm5C_associated_SNPs_38222 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37675 DeepMRMD:1;iRNA_m5C:0.999536712157815 37676 chr5 110439999 110439999 1 + T G STAD 110439992 + 110439972 110440012 41 ACTCTACAGCAATTGCCGGACTGACATTTCTCCATAGAGAG ACTCTACAGCAATTGCCGGACTGACATGTCTCCATAGAGAG < 41bp 1 0.325191192523085 1 0.0948715209960938 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR36 ENSG00000134987 CDS Human protein_coding chr5:110439992 chr5:110439999 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_38223 0 0 1 1 0 Nucleus 1 0.500231644008477 1 0.999536711983046 hm5C_site_37676 DeepMRMD:1;iRNA_m5C:0.999536711983046 37677 chr7 69064858 69064858 1 + G A STAD 69064849 + 69064829 69064869 41 TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG TCCTCCGCCCCGTCCCGGCCCAGACCCCCACGGAGGAAGCG < 41bp 1 0.157779019297432 1 0.028564989566803 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064849 chr7:69064858 synonymous SNV . 0 30 hm5C_associated_SNPs_38224 0 0 0 0 1 Nucleus 1 0.50020234619054 1 0.999595307618919 hm5C_site_37677 DeepMRMD:1;iRNA_m5C:0.999595307618919 37678 chr17 42635638 42635638 1 + G A STAD 42635648 + 42635628 42635668 41 GCTACGCCACGCTGGAGCACCCCTTCCACTGCCCGCGCGTC GCTACGCCACACTGGAGCACCCCTTCCACTGCCCGCGCGTC < 41bp 1 0.107310696692539 1 0.035802960395813 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZD2 ENSG00000180340 CDS Human protein_coding chr17:42635648 chr17:42635638 synonymous SNV . 0 11 hm5C_associated_SNPs_38225 0 0 0 0 0 exosome 1 0.50023171293825 1 0.999536574123499 hm5C_site_37678 DeepMRMD:1;iRNA_m5C:0.999536574123499 37679 chr3 148871345 148871345 1 + C T STAD 148871349 + 148871329 148871369 41 TTCATAGGCTTGAAAGCCATCTGTCACTTTAAAAACCACAT TTCATAGGCTTGAAAGTCATCTGTCACTTTAAAAACCACAT < 41bp 1 0.130143188789344 1 0.0812898278236389 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPS3 ENSG00000163755 CDS Human protein_coding chr3:148871349 chr3:148871345 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_38226 0 0 0 0 2 Ribosome 1 0.500231643922963 1 0.999536712154075 hm5C_site_37679 DeepMRMD:1;iRNA_m5C:0.999536712154075 37680 chr18 21474921 21474921 1 + G A STAD 21474924 + 21474904 21474944 41 ACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCT ACCTGGCCACCATGGGCAAGCAGCTCCGCCTGGTCAAGTCT < 41bp 1 0.220863281069259 1 0.386789321899414 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21474924 chr18:21474921 nonsynonymous SNV 0.969 0 18 hm5C_associated_SNPs_38227 0 0 0 0 1 Cytosol 1 0.500231644588862 1 0.999536710822275 hm5C_site_37680 DeepMRMD:1;iRNA_m5C:0.999536710822275 37681 chrX 21995195 21995195 1 + C T STAD 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACCCATAGTGTGAGGAGGAGCCATCGACAGATACTGGCCCA < 41bp 1 0.162886213739375 1 0.214223593473434 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995195 stopgain 0.997 1 11 hm5C_associated_SNPs_38228 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37681 DeepMRMD:1;iRNA_m5C:0.999536712157815 37682 chr9 116764939 116764939 1 + A C STAD 116764935 + 116764915 116764955 41 ACCTCAGGGGAGGGAGCCTCCCAAAGCAGTGAGTACTTTTT ACCTCAGGGGAGGGAGCCTCCCAACGCAGTGAGTACTTTTT < 41bp 1 0.0648596854528009 1 0.263130068778992 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116764935 chr9:116764939 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_38229 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37682 DeepMRMD:1;iRNA_m5C:0.999536712157815 37683 chr3 49212180 49212180 1 + C T STAD 49212179 + 49212159 49212199 41 CCAATTCCATTGACAGGGGGCCGCCAGGGCAAGCTCCCGGT CCAATTCCATTGACAGGGGGCTGCCAGGGCAAGCTCCCGGT < 41bp 1 0.179813886477598 1 0.120189249515533 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212179 chr3:49212180 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_38230 0 0 1 0 1 Cytosol 1 0.500231643972949 1 0.999536712054103 hm5C_site_37683 DeepMRMD:1;iRNA_m5C:0.999536712054103 37684 chr16 28884771 28884771 1 + C T STAD 28884777 + 28884757 28884797 41 TTCCTATCCAGAACCGACCACCTCCCATGACCCACCCCAGC TTCCTATCCAGAACTGACCACCTCCCATGACCCACCCCAGC < 41bp 1 0.0202277409846206 1 0.261127561330795 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28884777 chr16:28884771 nonsynonymous SNV 0.982 0 15 hm5C_associated_SNPs_38231 0 0 1 0 1 Cytosol 1 0.500231643913217 1 0.999536712173566 hm5C_site_37684 DeepMRMD:1;iRNA_m5C:0.999536712173566 37685 chrX 73046663 73046663 1 + G A STAD 73046662 - 73046642 73046682 41 CCAACGACCTAAGATTAGCCCAGGGTTGTAGCTGGAAGACC CCAACGACCTAAGATTAGCTCAGGGTTGTAGCTGGAAGACC < 41bp 1 0.642757531719362 1 0.636115729808807 experiment 0.714484936561276 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046662 chrX:73046663 . . 0 20 hm5C_associated_SNPs_38232 0 0 1 1 0 unknown 1 0.500231643921092 0.727768540382386 0.999536712157815 hm5C_site_37685 DeepMRMD:0.727768540382386;iRNA_m5C:0.999536712157815 37686 chrX 73046663 73046663 1 + G A STAD 73046674 - 73046654 73046694 41 TGTGACACAAGGCCAACGACCTAAGATTAGCCCAGGGTTGT TGTGACACAAGGCCAACGACCTAAGATTAGCTCAGGGTTGT < 41bp 1 0.277864415293834 1 0.30571836233139 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046674 chrX:73046663 . . 0 32 hm5C_associated_SNPs_38233 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157817 hm5C_site_37686 DeepMRMD:1;iRNA_m5C:0.999536712157817 37687 chrX 73046663 73046663 1 + G A STAD 73046678 - 73046658 73046698 41 GACTTGTGACACAAGGCCAACGACCTAAGATTAGCCCAGGG GACTTGTGACACAAGGCCAACGACCTAAGATTAGCTCAGGG < 41bp 1 0.126198976078271 1 0.424855291843414 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046678 chrX:73046663 . . 0 36 hm5C_associated_SNPs_38234 0 0 1 1 0 unknown 1 0.500231643921082 1 0.999536712157836 hm5C_site_37687 DeepMRMD:1;iRNA_m5C:0.999536712157836 37688 chr7 21631029 21631029 1 + T C STAD 21631019 + 21630999 21631039 41 AGCACAGAGTTGAGCGCACACAGAAAAACGTGAAGGTGATC AGCACAGAGTTGAGCGCACACAGAAAAACGCGAAGGTGATC < 41bp 1 0.585426510159538 1 0.556376397609711 experiment 0.829146979680923 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21631019 chr7:21631029 nonsynonymous SNV 0.003 0 31 hm5C_associated_SNPs_38235 0 0 0 0 0 nucleolus 1 0.500231643926864 0.887247204780578 0.999536712146271 hm5C_site_37688 DeepMRMD:0.887247204780578;iRNA_m5C:0.999536712146271 37689 chr19 11472121 11472121 1 + G A STAD 11472113 + 11472093 11472133 41 GTGGCCGCCGCGCGCCGCGCCTTCCCCTGCAAGGATGCGGC GTGGCCGCCGCGCGCCGCGCCTTCCCCTACAAGGATGCGGC < 41bp 1 0.126302175298771 1 0.154127478599548 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11472113 chr19:11472121 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_38236 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_37689 DeepMRMD:1;iRNA_m5C:0.999536712157813 37690 chr19 45850756 45850756 1 + G A STAD 45850750 + 45850730 45850770 41 ACAGCCTGGCCTCCCTGTTCCCCAGCGAGGAGGAGGAGAGG ACAGCCTGGCCTCCCTGTTCCCCAGCAAGGAGGAGGAGAGG < 41bp 1 0.208336922796277 1 0.0523311793804169 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45850750 chr19:45850756 nonsynonymous SNV 0.987 2 27 hm5C_associated_SNPs_38237 0 0 0 0 3 nucleolus 1 0.500231643919603 1 0.999536712160793 hm5C_site_37690 DeepMRMD:1;iRNA_m5C:0.999536712160793 37691 chr11 8706388 8706388 1 + T C STAD 8706393 + 8706373 8706413 41 ACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGGCTG ACAGACACGGGTGAACGCTGCTAAAAACAAGACTGGGGCTG < 41bp 1 0.645856667279139 1 0.700012683868408 experiment 0.708286665441722 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL27A ENSG00000166441 CDS Human protein_coding chr11:8706393 chr11:8706388 synonymous SNV . 0 16 hm5C_associated_SNPs_38238 0 0 1 0 1 Cytosol 1 0.500231381946658 0.599974632263184 0.999537236106684 hm5C_site_37691 DeepMRMD:0.599974632263184;iRNA_m5C:0.999537236106684 37692 chr17 65722733 65722733 1 + A G STAD 65722746 + 65722726 65722766 41 ACGTCGCAGTCCTAGGAAGTCCACTAGCAGCTTCTAAGGGT ACGTCGCGGTCCTAGGAAGTCCACTAGCAGCTTCTAAGGGT < 41bp 1 0.459907064244562 1 0.40200537443161 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65722746 chr17:65722733 synonymous SNV . 0 8 hm5C_associated_SNPs_38239 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37692 DeepMRMD:1;iRNA_m5C:0.999536712157815 37693 chr2 69379378 69379378 1 + G A STAD 69379375 + 69379355 69379395 41 CTGGCTCTCCTCTGGTGGTTCTGGCCCCTCTGCTGCACTGT CTGGCTCTCCTCTGGTGGTTCTGACCCCTCTGCTGCACTGT < 41bp 1 0.210605567973881 1 0.435444444417953 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69379375 chr2:69379378 stopgain 0.997 1 24 hm5C_associated_SNPs_38240 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643874652 1 0.999536712250695 hm5C_site_37693 DeepMRMD:1;iRNA_m5C:0.999536712250695 37694 chr11 61404325 61404325 1 + C T STAD 61404327 + 61404307 61404347 41 GGTGCTGATGGGCAAGAACGCCATGACGCGCAAGGCCATCC GGTGCTGATGGGCAAGAATGCCATGACGCGCAAGGCCATCC < 41bp 1 0.372231298337378 1 0.0623970329761505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404327 chr11:61404325 . . 0 19 hm5C_associated_SNPs_38241 0 0 0 0 0 unknown 1 0.500231643921089 1 0.999536712157822 hm5C_site_37694 DeepMRMD:1;iRNA_m5C:0.999536712157822 37695 chr11 490498 490498 1 + C T STAD 490505 + 490485 490525 41 GCACCGTCGGCAACGGGGACCAGCACCCACTGGGGCTGGAC GCACCGTCGGCAATGGGGACCAGCACCCACTGGGGCTGGAC < 41bp 1 0.551129405517927 1 0.693546831607819 experiment 0.897741188964146 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:490505 chr11:490498 synonymous SNV . 0 14 hm5C_associated_SNPs_38242 0 0 1 0 1 Ribosome 1 0.500231643861416 0.612906336784362 0.999536712277169 hm5C_site_37695 DeepMRMD:0.612906336784362;iRNA_m5C:0.999536712277169 37696 chr6 30610593 30610593 1 + G A STAD 30610600 + 30610580 30610620 41 AACAGGGCCCCTCGCCGCGCCACACCTCCAGCCCACCCACC AACAGGGCCCCTCACCGCGCCACACCTCCAGCCCACCCACC < 41bp 1 0.25178646077198 1 0.291051238775253 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ATAT1 ENSG00000137343 CDS Human protein_coding chr6:30610600 chr6:30610593 nonsynonymous SNV 0.969 2 14 hm5C_associated_SNPs_38243 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37696 DeepMRMD:1;iRNA_m5C:0.999536712157815 37697 chr19 12902862 12902862 1 + C A STAD 12902850 + 12902830 12902870 41 TCGCCTCTTCGGAGCTGGAACGCCTGATTGTCCCCAACAGC TCGCCTCTTCGGAGCTGGAACGCCTGATTGTCACCAACAGC < 41bp 1 0.402406431446862 1 0.141667425632477 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control JUNB ENSG00000171223 CDS Human protein_coding chr19:12902850 chr19:12902862 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_38244 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37697 DeepMRMD:1;iRNA_m5C:0.999536712157815 Sporadic Amyotrophic Lateral Sclerosis (ALS) 37698 chr12 53700875 53700875 1 + C T STAD 53700859 + 53700839 53700879 41 GCGGCTTCACTGGCGGTCACCACACCCGAGAGGGTGCCTTG GCGGCTTCACTGGCGGTCACCACACCCGAGAGGGTGTCTTG < 41bp 1 0.515793187917153 1 0.396431982517242 experiment 0.968413624165693 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700859 chr12:53700875 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_38245 0 0 1 0 0 cytosol 1 0.500252364707563 1 0.999495270584874 hm5C_site_37698 DeepMRMD:1;iRNA_m5C:0.999495270584874 37699 chr2 97215159 97215159 1 + G A STAD 97215177 + 97215157 97215197 41 ACGCCCATCGAGAGGGTGCCCCATCTCGGCTTCAAGCAGAG ACACCCATCGAGAGGGTGCCCCATCTCGGCTTCAAGCAGAG < 41bp 1 0.111157877507978 1 0.217737704515457 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID5A ENSG00000196843 CDS Human protein_coding chr2:97215177 chr2:97215159 synonymous SNV . 0 3 hm5C_associated_SNPs_38246 0 0 0 0 0 Cytosol 1 0.500231643921266 1 0.999536712157468 hm5C_site_37699 DeepMRMD:1;iRNA_m5C:0.999536712157468 37700 chr8 144332286 144332286 1 + G A STAD 144332280 + 144332260 144332300 41 AGGAAGAAACCCTATGAGTGCAGTGAGTGTGGGCGGATCTT AGGAAGAAACCCTATGAGTGCAGTGAATGTGGGCGGATCTT < 41bp 1 0.223880391031425 1 0.337524890899658 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFP41 ENSG00000181638;ENSG00000264668 CDS Human other chr8:144332280 chr8:144332286 synonymous SNV . 0 27 hm5C_associated_SNPs_38247 0 0 1 1 0 chromatin 1 0.500231643921445 1 0.99953671215711 hm5C_site_37700 DeepMRMD:1;iRNA_m5C:0.99953671215711 37701 chr10 31812911 31812911 1 + G C STAD 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA CAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA < 41bp 1 0.226395630710021 1 0.261093884706497 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812911 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_38248 0 0 1 0 1 Nucleus 1 0.500231643921777 1 0.999536712156446 hm5C_site_37701 DeepMRMD:1;iRNA_m5C:0.999536712156446 37702 chr5 112868662 112868662 1 + C T STAD 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA TGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.546470508142566 1 0.136386334896088 experiment 0.907058983714868 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868662 synonymous SNV . 0 1 hm5C_associated_SNPs_38249 0 0 1 0 2 Cytosol 1 0.500231804006113 1 0.999536391987773 hm5C_site_37702 DeepMRMD:1;iRNA_m5C:0.999536391987773 37703 chr1 162740230 162740230 1 + C G STAD 162740248 + 162740228 162740268 41 TTCGCCCTGACTACCAGGAGCCATCCAGGCTGATACGAAAA TTGGCCCTGACTACCAGGAGCCATCCAGGCTGATACGAAAA < 41bp 1 0.0156303743089615 1 0.0588248670101166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162740248 chr1:162740230 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_38250 0 0 0 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37703 DeepMRMD:1;iRNA_m5C:0.999536712157815 37704 chr19 38573359 38573359 1 + C T STAD 38573353 + 38573333 38573373 41 CGCCGCCTCGGCCATGGCCTCCCTCACGGCCTCGCGGGCCC CGCCGCCTCGGCCATGGCCTCCCTCATGGCCTCGCGGGCCC < 41bp 1 0.105971856221114 1 0.148748844861984 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38573353 chr19:38573359 nonsynonymous SNV 0.006 1 27 hm5C_associated_SNPs_38251 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37704 DeepMRMD:1;iRNA_m5C:0.999536712157815 37705 chr14 24505773 24505773 1 + T C STAD 24505774 + 24505754 24505794 41 GTCGGTGCGGTTGGCCAGCTCCGGGATGACCCGCCGGGACC GTCGGTGCGGTTGGCCAGCCCCGGGATGACCCGCCGGGACC < 41bp 1 0.696347651262841 1 0.758513808250427 experiment 0.607304697474318 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DHRS4L1 ENSG00000225766 ncRNA_exonic Human processed_transcript chr14:24505774 chr14:24505773 . . 0 20 hm5C_associated_SNPs_38252 0 0 0 0 1 unknown 1 0.500231639210968 0.482972383499146 0.999536721578064 hm5C_site_37705 DeepMRMD:0.482972383499146;iRNA_m5C:0.999536721578064 37706 chr9 134026004 134026004 1 + T G STAD 134026009 + 134025989 134026029 41 TGTGGCTTCTACAGATTGCACACTTTCAGAAGGAGTTGGAA TGTGGCTTCTACAGAGTGCACACTTTCAGAAGGAGTTGGAA < 41bp 1 0.093445736122898 1 0.0390708744525909 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134026009 chr9:134026004 nonsynonymous SNV 0.993 4 16 hm5C_associated_SNPs_38253 0 0 1 0 1 Cytosol 1 0.500231643240491 1 0.999536713519018 hm5C_site_37706 DeepMRMD:1;iRNA_m5C:0.999536713519018 37707 chr19 6374319 6374319 1 + C T STAD 6374323 + 6374303 6374343 41 CCCCGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACC CCCCGGCCAGACCCTGTTCTCCTCCGTGCACGTGCTGGACC < 41bp 1 0.253686518145088 1 0.112341076135635 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALKBH7 ENSG00000125652 CDS Human protein_coding chr19:6374323 chr19:6374319 nonsynonymous SNV 0.073 4 17 hm5C_associated_SNPs_38254 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_37707 DeepMRMD:1;iRNA_m5C:0.999536712157815 37708 chr1 45973942 45973942 1 + G A STAD 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATTGCTGACTACGAGGTGCACCCCAACCGACACCCCAAG < 41bp 1 0.202773185743365 1 0.0484766662120819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973942 nonsynonymous SNV 0.978 4 34 hm5C_associated_SNPs_38255 0 0 1 0 2 Cytosol 1 0.500230972631325 1 0.99953805473735 hm5C_site_37708 DeepMRMD:1;iRNA_m5C:0.99953805473735 37709 chr1 109643110 109643110 1 + C T STAD 109643093 + 109643073 109643113 41 GGGGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCT GGGGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCATGCT < 41bp 1 0.135270555540711 1 0.034042626619339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643093 chr1:109643110 . . 0 38 hm5C_associated_SNPs_38256 0 0 1 1 0 unknown 1 0.500231773679655 1 0.99953645264069 hm5C_site_37709 DeepMRMD:1;iRNA_m5C:0.99953645264069 37710 chr1 109643110 109643110 1 + C T STAD 109643095 + 109643075 109643115 41 GGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCACGCTGT GGCGCTGTGCAGCGAGGCCCCTTAGGCGGCGGCCATGCTGT < 41bp 1 0.657000784358486 1 0.198974132537842 experiment 0.685998431283027 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643095 chr1:109643110 . . 0 36 hm5C_associated_SNPs_38257 0 0 1 1 0 unknown 1 0.500231643421416 1 0.999536713157167 hm5C_site_37710 DeepMRMD:1;iRNA_m5C:0.999536713157167 37711 chr1 109643110 109643110 1 + C T STAD 109643108 + 109643088 109643128 41 GAGGCCCCTTAGGCGGCGGCCACGCTGTGGTCCCCGAGGTC GAGGCCCCTTAGGCGGCGGCCATGCTGTGGTCCCCGAGGTC < 41bp 1 0.438632979644163 1 0.39786097407341 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643108 chr1:109643110 . . 0 23 hm5C_associated_SNPs_38259 0 0 1 1 0 unknown 1 0.500231643921058 1 0.999536712157884 hm5C_site_37711 DeepMRMD:1;iRNA_m5C:0.999536712157884 37712 chr5 140793318 140793318 1 + C T STAD 140793307 + 140793287 140793327 41 TCTCCCTAAGAGTTCAGAGCCGTGCCAATGGCGTCAAGTAC TCTCCCTAAGAGTTCAGAGCCGTGCCAATGGTGTCAAGTAC < 41bp 1 0.126869935422744 1 0.233109027147293 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCDHGA10 ENSG00000253846 CDS Human protein_coding chr5:140793307 chr5:140793318 synonymous SNV . 0 32 hm5C_associated_SNPs_38261 0 0 0 0 0 exosome 1 0.500231643906012 1 0.999536712187976 hm5C_site_37712 DeepMRMD:1;iRNA_m5C:0.999536712187976 37713 chr5 140793318 140793318 1 + C T STAD 140793311 + 140793291 140793331 41 CCTAAGAGTTCAGAGCCGTGCCAATGGCGTCAAGTACCCGG CCTAAGAGTTCAGAGCCGTGCCAATGGTGTCAAGTACCCGG < 41bp 1 0.0821022567632959 1 0.0949468910694122 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCDHGA10 ENSG00000253846 CDS Human protein_coding chr5:140793311 chr5:140793318 synonymous SNV . 0 28 hm5C_associated_SNPs_38262 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_37713 DeepMRMD:1;iRNA_m5C:0.999536712157816 37714 chr20 62587751 62587751 1 + C A STAD 62587762 - 62587742 62587782 41 CTCCCGGCGGCCCATGCGCGCCGCCCGGCCAGGCCCGCAAA CTCCCGGCGGCCCATGCGCGCCGCCCGGCCATGCCCGCAAA < 41bp 1 0.453281496466991 1 0.172742515802383 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UCKL1-AS1 ENSG00000198276 UTR5 Human protein_coding chr20:62587762 chr20:62587751 . . 0 32 hm5C_associated_SNPs_38264 0 0 1 0 0 unknown 1 0.500231643666659 1 0.999536712666682 hm5C_site_37714 DeepMRMD:1;iRNA_m5C:0.999536712666682 37715 chr10 17277192 17277192 1 + C T STAD 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGTGTGA < 41bp 1 0.116698719459131 1 0.090015172958374 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277192 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_38265 0 0 1 0 1 Ribosome 1 0.500231647172249 1 0.999536705655503 hm5C_site_37715 DeepMRMD:1;iRNA_m5C:0.999536705655503 37716 chr10 17277192 17277192 1 + C T STAD 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTCCCTGGAACGCCAGATGTGTGAAATGGAAGA < 41bp 1 0.399953513885809 1 0.528451383113861 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277192 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_38266 0 0 1 0 1 Ribosome 1 0.500231643934244 0.943097233772278 0.999536712131512 hm5C_site_37716 DeepMRMD:0.943097233772278;iRNA_m5C:0.999536712131512 37717 chr17 80426665 80426665 1 + T C STAD 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGCGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC < 41bp 1 0.536277351702677 1 0.462855875492096 experiment 0.927445296594646 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426665 nonsynonymous SNV 0.998 1 9 hm5C_associated_SNPs_38268 0 0 1 0 1 Cytosol 1 0.500253222839613 1 0.999493554320773 hm5C_site_37717 DeepMRMD:1;iRNA_m5C:0.999493554320773 37718 chr9 137708924 137708924 1 + G T STAD 137708906 + 137708886 137708926 41 TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAATGG < 41bp 1 0.336839405576142 1 0.789427042007446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137708906 chr9:137708924 nonsynonymous SNV 0.975 4 39 hm5C_associated_SNPs_38269 0 0 0 0 1 Nucleus 1 0.500231643921092 0.421145915985108 0.999536712157815 hm5C_site_37718 DeepMRMD:0.421145915985108;iRNA_m5C:0.999536712157815 37719 chr20 47895512 47895512 1 + C G STAD 47895499 + 47895479 47895519 41 TGGTGTAAATGATGACTTCACTTTTTTCCCCATCAGATCGA TGGTGTAAATGATGACTTCACTTTTTTCCCCATGAGATCGA < 41bp 1 0.0982735879924065 1 0.0568522810935974 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895499 chr20:47895512 . . 0 34 hm5C_associated_SNPs_38270 0 0 1 0 0 unknown 1 0.500231643981586 1 0.999536712036828 hm5C_site_37719 DeepMRMD:1;iRNA_m5C:0.999536712036828 37720 chr20 47895512 47895512 1 + C G STAD 47895509 + 47895489 47895529 41 GATGACTTCACTTTTTTCCCCATCAGATCGACAATGCTGAC GATGACTTCACTTTTTTCCCCATGAGATCGACAATGCTGAC < 41bp 1 0.453700772274452 1 0.111881285905838 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895509 chr20:47895512 . . 0 24 hm5C_associated_SNPs_38271 0 0 1 0 0 unknown 1 0.500231634005162 1 0.999536731989675 hm5C_site_37720 DeepMRMD:1;iRNA_m5C:0.999536731989675 37721 chr20 47895512 47895512 1 + C G STAD 47895529 + 47895509 47895549 41 CATCAGATCGACAATGCTGACGTCTTATATTTTGCCAGTTA CATGAGATCGACAATGCTGACGTCTTATATTTTGCCAGTTA < 41bp 1 0.205875755006029 1 0.0751363933086395 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895529 chr20:47895512 . . 0 4 hm5C_associated_SNPs_38272 0 0 1 0 0 unknown 1 0.500231667308049 1 0.999536665383902 hm5C_site_37721 DeepMRMD:1;iRNA_m5C:0.999536665383902 37722 chr20 47895512 47895512 1 + C G STAD 47895532 + 47895512 47895552 41 CAGATCGACAATGCTGACGTCTTATATTTTGCCAGTTAGTT GAGATCGACAATGCTGACGTCTTATATTTTGCCAGTTAGTT < 41bp 1 0.0482165095774464 1 0.0699374675750732 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895532 chr20:47895512 . . 0 1 hm5C_associated_SNPs_38273 0 0 1 0 0 unknown 1 0.500231701399602 1 0.999536597200796 hm5C_site_37722 DeepMRMD:1;iRNA_m5C:0.999536597200796 37723 chr3 193335014 193335014 1 + G C STAD 193335015 + 193334995 193335035 41 AGAAGACCTTGTAAAGTTAGCACCAGACTTTGACAAGATTG AGAAGACCTTGTAAAGTTACCACCAGACTTTGACAAGATTG < 41bp 1 0.693688286725504 1 0.17754191160202 experiment 0.612623426548991 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193335015 chr3:193335014 nonsynonymous SNV 0.927 0 20 hm5C_associated_SNPs_38274 0 0 1 0 2 Nucleus 1 0.500231644452578 1 0.999536711094844 hm5C_site_37723 DeepMRMD:1;iRNA_m5C:0.999536711094844 37724 chr12 56495520 56495520 1 + G A STAD 56495521 + 56495501 56495541 41 CTCAGTGCCTCTCTGGGCAGCACACAGAGTTGCCCACTCCA CTCAGTGCCTCTCTGGGCAACACACAGAGTTGCCCACTCCA < 41bp 1 0.179781810881098 1 0.0805833041667938 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56495521 chr12:56495520 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_38275 0 0 0 0 0 Cytosol 1 0.500231644814798 1 0.999536710370404 hm5C_site_37724 DeepMRMD:1;iRNA_m5C:0.999536710370404 37725 chr11 57373908 57373908 1 + A C STAD 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCACGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA < 41bp 1 0.0218880817612222 1 0.0559627115726471 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373908 nonsynonymous SNV 0.000 1 4 hm5C_associated_SNPs_38276 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643924447 1 0.999536712151105 hm5C_site_37725 DeepMRMD:1;iRNA_m5C:0.999536712151105 37726 chr11 57373908 57373908 1 + A C STAD 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CACGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG < 41bp 1 0.012641320783187 1 0.0824719071388245 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373908 nonsynonymous SNV 0.000 1 3 hm5C_associated_SNPs_38277 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_37726 DeepMRMD:1;iRNA_m5C:0.999536712157814 37727 chr11 57373908 57373908 1 + A C STAD 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT ACGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT < 41bp 1 0.0177317799305619 1 0.0342950522899628 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373908 nonsynonymous SNV 0.000 1 2 hm5C_associated_SNPs_38278 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921694 1 0.999536712156612 hm5C_site_37727 DeepMRMD:1;iRNA_m5C:0.999536712156612 37728 chr7 91622286 91622286 1 + G A STAD 91622295 + 91622275 91622315 41 AAAGTGAGTTGGCTGGGAAGCAGCATGAGATTGAAGAGCTA AAAGTGAGTTGACTGGGAAGCAGCATGAGATTGAAGAGCTA < 41bp 1 0.636261705118929 1 0.738859534263611 experiment 0.727476589762143 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91622295 chr7:91622286 nonsynonymous SNV 0.950 0 12 hm5C_associated_SNPs_38280 0 0 1 0 2 Nucleus 1 0.500225617195959 0.522280931472778 0.999548765608081 hm5C_site_37728 DeepMRMD:0.522280931472778;iRNA_m5C:0.999548765608081 37729 chr7 91622286 91622286 1 + G A STAD 91622298 + 91622278 91622318 41 GTGAGTTGGCTGGGAAGCAGCATGAGATTGAAGAGCTAAAC GTGAGTTGACTGGGAAGCAGCATGAGATTGAAGAGCTAAAC < 41bp 1 0.455352401692705 1 0.457144975662231 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91622298 chr7:91622286 nonsynonymous SNV 0.950 0 9 hm5C_associated_SNPs_38281 0 0 1 0 2 Nucleus 1 0.500231643870671 1 0.999536712258657 hm5C_site_37729 DeepMRMD:1;iRNA_m5C:0.999536712258657 37730 chr11 103075616 103075616 1 + T C STAD 103075629 + 103075609 103075649 41 GATAAACTGTGAGAGTAATCCAGCTTTGCATAAGAAATGCC GATAAACCGTGAGAGTAATCCAGCTTTGCATAAGAAATGCC < 41bp 1 0.13407896928082 1 0.421594023704529 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC2H1 ENSG00000187240 CDS Human protein_coding chr11:103075629 chr11:103075616 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_38282 0 0 1 0 2 exosome 1 0.500231643924341 1 0.999536712151318 hm5C_site_37730 DeepMRMD:1;iRNA_m5C:0.999536712151318 37731 chr1 109801344 109801344 1 + C T STAD 109801328 + 109801308 109801348 41 CAGCCGCCAGGGCCCGGGGGCGGGCCGCCCTTCCTGCCCTC CAGCCGCCAGGGCCCGGGGGCGGGCCGCCCTTCCTGTCCTC < 41bp 1 0.29691951909734 1 0.849355697631836 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801328 chr1:109801344 nonsynonymous SNV 0.014 0 37 hm5C_associated_SNPs_38283 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.301288604736328 0.999536712157815 hm5C_site_37731 DeepMRMD:0.301288604736328;iRNA_m5C:0.999536712157815 37732 chr12 54333266 54333266 1 + G A STAD 54333251 + 54333231 54333271 41 TCCTACCAGGCGATGCCCGGCTACCTGGACGTGTCGGTGGT TCCTACCAGGCGATGCCCGGCTACCTGGACGTGTCAGTGGT < 41bp 1 0.203698876910152 1 0.155807346105576 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HOXC13 ENSG00000123364 CDS Human protein_coding chr12:54333251 chr12:54333266 synonymous SNV . 0 36 hm5C_associated_SNPs_38284 0 0 0 0 0 nucleus 1 0.500231643921409 1 0.999536712157182 hm5C_site_37732 DeepMRMD:1;iRNA_m5C:0.999536712157182 37733 chr11 61404281 61404281 1 + C T STAD 61404261 + 61404241 61404281 41 GGGAGCAGACAATGTGAACTCCAAGCAGATGCAGCAGATCC GGGAGCAGACAATGTGAACTCCAAGCAGATGCAGCAGATCT < 41bp 1 0.303328239055095 1 0.705611228942871 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404261 chr11:61404281 . . 0 41 hm5C_associated_SNPs_38285 0 0 0 0 0 unknown 1 0.500233876040297 0.588777542114258 0.999532247919406 hm5C_site_37733 DeepMRMD:0.588777542114258;iRNA_m5C:0.999532247919406 37734 chr9 101777743 101777743 1 + C T STAD 101777755 + 101777735 101777775 41 GCTGCAACCGAAGTGTCCCTCAGTACTTTTGAGGATGAGGA GCTGCAACTGAAGTGTCCCTCAGTACTTTTGAGGATGAGGA < 41bp 1 0.26686705215965 1 0.826751351356506 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101777755 chr9:101777743 synonymous SNV . 0 9 hm5C_associated_SNPs_38286 0 0 0 0 0 Endoplasmic reticulum 1 0.50023164277712 0.346497297286988 0.99953671444576 hm5C_site_37734 DeepMRMD:0.346497297286988;iRNA_m5C:0.99953671444576 37735 chr2 32724719 32724719 1 + C T STAD 32724730 + 32724710 32724750 41 TATTTCTGCCGTGATAGAATCGGTTACATTTTTAGTGCACC TATTTCTGCTGTGATAGAATCGGTTACATTTTTAGTGCACC < 41bp 1 0.0445541418115402 1 0.238208919763565 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32724730 chr2:32724719 synonymous SNV . 0 10 hm5C_associated_SNPs_38287 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_37735 DeepMRMD:1;iRNA_m5C:0.999536712157813 37736 chr15 99434708 99434708 1 + G A STAD 99434698 + 99434678 99434718 41 CTATGCCGGTGTCTGTGTGCCTGCCTGCCCGCCCAACACCT CTATGCCGGTGTCTGTGTGCCTGCCTGCCCACCCAACACCT < 41bp 1 0.258991223035821 1 0.421417444944382 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99434698 chr15:99434708 synonymous SNV . 0 31 hm5C_associated_SNPs_38288 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643934627 1 0.999536712130746 hm5C_site_37736 DeepMRMD:1;iRNA_m5C:0.999536712130746 37737 chr9 35846850 35846850 1 + C T STAD 35846835 + 35846815 35846855 41 GTGGAGAGGCTGGGGCTGCACCGACAGTGCAGATGCGCTCA GTGGAGAGGCTGGGGCTGCACCGACAGTGCAGATGTGCTCA < 41bp 1 0.339692543241718 1 0.141614437103271 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35846835 chr9:35846850 nonsynonymous SNV 0.996 3 36 hm5C_associated_SNPs_38289 0 0 0 0 0 cytosol 1 0.500231643912926 1 0.999536712174148 hm5C_site_37737 DeepMRMD:1;iRNA_m5C:0.999536712174148 37738 chr19 19655251 19655251 1 + G A STAD 19655244 + 19655224 19655264 41 GACCTGCGCTTCGTGGACAGCGACGGCGAGCTGGCTCCACT GACCTGCGCTTCGTGGACAGCGACGGCAAGCTGGCTCCACT < 41bp 1 0.574446614548238 1 0.449211299419403 experiment 0.851106770903525 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19655244 chr19:19655251 nonsynonymous SNV 0.971 2 28 hm5C_associated_SNPs_38290 0 0 0 0 0 exosome 1 0.50023244712791 1 0.99953510574418 hm5C_site_37738 DeepMRMD:1;iRNA_m5C:0.99953510574418 37739 chr5 130726771 130726771 1 + C T STAD 130726785 + 130726765 130726805 41 TGGATACGAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA TGGATATGAAGGCGGGATAGCCCTGGTCCTTTCTCCAGTGA < 41bp 1 0.53234129674954 1 0.0822742879390717 experiment 0.93531740650092 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC42SE2 ENSG00000158985 CDS Human protein_coding chr5:130726785 chr5:130726771 nonsynonymous SNV 0.994 3 7 hm5C_associated_SNPs_38291 0 0 1 0 2 Ribosome 1 0.500231643968323 1 0.999536712063354 hm5C_site_37739 DeepMRMD:1;iRNA_m5C:0.999536712063354 37740 chr19 38572477 38572477 1 + A G STAD 38572457 + 38572437 38572477 41 GGCGTGCGCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGA GGCGTGCGCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGG < 41bp 1 0.204404397214225 1 0.442471623420715 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572457 chr19:38572477 nonsynonymous SNV 0.996 2 41 hm5C_associated_SNPs_38292 0 0 1 0 0 Ribosome 1 0.500231876444183 1 0.999536247111634 hm5C_site_37740 DeepMRMD:1;iRNA_m5C:0.999536247111634 37741 chr19 38572477 38572477 1 + A G STAD 38572464 + 38572444 38572484 41 GCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTG GCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGGGGCCCTG < 41bp 1 0.16309294044924 1 0.208047837018967 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572464 chr19:38572477 nonsynonymous SNV 0.996 2 34 hm5C_associated_SNPs_38293 0 0 1 0 0 Ribosome 1 0.500231643872457 1 0.999536712255086 hm5C_site_37741 DeepMRMD:1;iRNA_m5C:0.999536712255086 37742 chr19 38572477 38572477 1 + A G STAD 38572465 + 38572445 38572485 41 CGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGA CGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGGGGCCCTGA < 41bp 1 0.230113375434527 1 0.242983609437943 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572465 chr19:38572477 nonsynonymous SNV 0.996 2 33 hm5C_associated_SNPs_38294 0 0 1 0 0 Ribosome 1 0.500231643919466 1 0.999536712161067 hm5C_site_37742 DeepMRMD:1;iRNA_m5C:0.999536712161067 37743 chr19 38572477 38572477 1 + A G STAD 38572467 + 38572447 38572487 41 CAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGA CAAGGGTGGCCGACTGGCCGCCCAAGCGGGGGGCCCTGAGA < 41bp 1 0.18067041757514 1 0.41647469997406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572467 chr19:38572477 nonsynonymous SNV 0.996 2 31 hm5C_associated_SNPs_38295 0 0 1 0 0 Ribosome 1 0.500231643868018 1 0.999536712263964 hm5C_site_37743 DeepMRMD:1;iRNA_m5C:0.999536712263964 37744 chr19 38572477 38572477 1 + A G STAD 38572468 + 38572448 38572488 41 AAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAG AAGGGTGGCCGACTGGCCGCCCAAGCGGGGGGCCCTGAGAG < 41bp 1 0.0746604979807643 1 0.666555881500244 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572468 chr19:38572477 nonsynonymous SNV 0.996 2 30 hm5C_associated_SNPs_38296 0 0 1 0 0 Ribosome 1 0.500231643921174 0.666888236999512 0.999536712157652 hm5C_site_37744 DeepMRMD:0.666888236999512;iRNA_m5C:0.999536712157652 37745 chr19 38572477 38572477 1 + A G STAD 38572469 + 38572449 38572489 41 AGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAGA AGGGTGGCCGACTGGCCGCCCAAGCGGGGGGCCCTGAGAGA < 41bp 1 0.232271226875816 1 0.671252369880676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572469 chr19:38572477 nonsynonymous SNV 0.996 2 29 hm5C_associated_SNPs_38297 0 0 1 0 0 Ribosome 1 0.500231643918291 0.657495260238648 0.999536712163419 hm5C_site_37745 DeepMRMD:0.657495260238648;iRNA_m5C:0.999536712163419 37746 chr20 30723902 30723902 1 + C T STAD 30723891 + 30723871 30723911 41 CATCAGGCTGTGAAGCTCACCAGCTCTCGAACCCAGCTACC CATCAGGCTGTGAAGCTCACCAGCTCTCGAATCCAGCTACC < 41bp 1 0.457199695000418 1 0.293982446193695 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30723891 chr20:30723902 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_38298 0 0 1 0 2 Nucleus 1 0.500231643919776 1 0.999536712160449 hm5C_site_37746 DeepMRMD:1;iRNA_m5C:0.999536712160449 37747 chr1 3328729 3328729 1 + G A STAD 3328714 + 3328694 3328734 41 GGCCAGCCCAAGTTTGGGGGCGGCTTGGCGCCCCCGGGGGC GGCCAGCCCAAGTTTGGGGGCGGCTTGGCGCCCCCAGGGGC < 41bp 1 0.399308532142852 1 0.274940371513367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328714 chr1:3328729 synonymous SNV . 0 36 hm5C_associated_SNPs_38299 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37747 DeepMRMD:1;iRNA_m5C:0.999536712157815 37748 chr1 3328729 3328729 1 + G A STAD 3328724 + 3328704 3328744 41 AGTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGC AGTTTGGGGGCGGCTTGGCGCCCCCAGGGGCCCCGAACAGC < 41bp 1 0.17732542914034 1 0.330397248268127 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328724 chr1:3328729 synonymous SNV . 0 26 hm5C_associated_SNPs_38300 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37748 DeepMRMD:1;iRNA_m5C:0.999536712157815 37749 chr1 3328729 3328729 1 + G A STAD 3328725 + 3328705 3328745 41 GTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCG GTTTGGGGGCGGCTTGGCGCCCCCAGGGGCCCCGAACAGCG < 41bp 1 0.598697372866341 1 0.444884866476059 experiment 0.802605254267317 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328725 chr1:3328729 synonymous SNV . 0 25 hm5C_associated_SNPs_38301 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37749 DeepMRMD:1;iRNA_m5C:0.999536712157815 37750 chr1 3328729 3328729 1 + G A STAD 3328726 + 3328706 3328746 41 TTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGT TTTGGGGGCGGCTTGGCGCCCCCAGGGGCCCCGAACAGCGT < 41bp 1 0.282369267875833 1 0.523199319839478 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328726 chr1:3328729 synonymous SNV . 0 24 hm5C_associated_SNPs_38302 0 0 0 0 0 Nucleus 1 0.500231643921092 0.953601360321044 0.999536712157815 hm5C_site_37750 DeepMRMD:0.953601360321044;iRNA_m5C:0.999536712157815 37751 chr1 3328729 3328729 1 + G A STAD 3328727 + 3328707 3328747 41 TTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGTG TTGGGGGCGGCTTGGCGCCCCCAGGGGCCCCGAACAGCGTG < 41bp 1 0.423405947887589 1 0.690465152263641 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328727 chr1:3328729 synonymous SNV . 0 23 hm5C_associated_SNPs_38303 0 0 0 0 0 Nucleus 1 0.500231643921092 0.619069695472718 0.999536712157815 hm5C_site_37751 DeepMRMD:0.619069695472718;iRNA_m5C:0.999536712157815 37752 chr12 57539115 57539115 1 + G A STAD 57539127 + 57539107 57539147 41 GAGCACGCGGCAGACCACAGCCATGGACTTCAGCTATGCCA GAGCACGCAGCAGACCACAGCCATGGACTTCAGCTATGCCA < 41bp 1 0.0387742904667023 1 0.108597218990326 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57539127 chr12:57539115 nonsynonymous SNV 0.753 2 9 hm5C_associated_SNPs_38304 0 0 0 0 0 Exosome 1 0.500231642509647 1 0.999536714980707 hm5C_site_37752 DeepMRMD:1;iRNA_m5C:0.999536714980707 37753 chr7 94293284 94293284 1 + G A STAD 94293303 + 94293283 94293323 41 CGCTCCCACTACCTGATGCACAACTACCCAGCTTTCATGAT CACTCCCACTACCTGATGCACAACTACCCAGCTTTCATGAT < 41bp 1 0.16301362392879 1 0.03469318151474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEG10 ENSG00000242265 CDS Human protein_coding chr7:94293303 chr7:94293284 nonsynonymous SNV 0.139 2 2 hm5C_associated_SNPs_38305 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921303 1 0.999536712157394 hm5C_site_37753 DeepMRMD:1;iRNA_m5C:0.999536712157394 37754 chr4 38055934 38055934 1 + G A STAD 38055933 + 38055913 38055953 41 AGTAGCCACCCCGCAGAAGGCGTGCGATTCTTCCAGCAGAT AGTAGCCACCCCGCAGAAGGCATGCGATTCTTCCAGCAGAT < 41bp 1 0.347755206986888 1 0.215482294559479 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38055933 chr4:38055934 synonymous SNV . 0 22 hm5C_associated_SNPs_38306 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37754 DeepMRMD:1;iRNA_m5C:0.999536712157815 37755 chr19 11660379 11660379 1 + G A STAD 11660370 + 11660350 11660390 41 CACCACCCTTCGCAGGCTGGCATGACTGCGCCAGGGACCAA CACCACCCTTCGCAGGCTGGCATGACTGCACCAGGGACCAA < 41bp 1 0.698566252958042 1 0.064909040927887 experiment 0.602867494083915 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNN1 ENSG00000130176 CDS Human protein_coding chr19:11660370 chr19:11660379 synonymous SNV . 0 30 hm5C_associated_SNPs_38307 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37755 DeepMRMD:1;iRNA_m5C:0.999536712157815 37756 chr1 107599615 107599615 1 + C T STAD 107599619 + 107599599 107599639 41 GACGTGGGCGCGGGCACCGGCATTCTGAGCATCTTCTGTGC GACGTGGGCGCGGGCATCGGCATTCTGAGCATCTTCTGTGC < 41bp 1 0.301300020974895 1 0.321789145469666 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRMT6 ENSG00000198890 CDS Human protein_coding chr1:107599619 chr1:107599615 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_38308 0 0 1 0 0 Ribosome 1 0.500231643921072 1 0.999536712157855 hm5C_site_37756 DeepMRMD:1;iRNA_m5C:0.999536712157855 37757 chr5 37697794 37697794 1 + C T STAD 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACTTGGGCACAGACACTTCTTGCGTGACTTTTTC < 41bp 1 0.395965824740517 1 0.0327509045600891 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697794 nonsynonymous SNV 0.990 0 11 hm5C_associated_SNPs_38309 0 0 0 2 2 Nucleus 1 0.500231643707698 1 0.999536712584605 hm5C_site_37757 DeepMRMD:1;iRNA_m5C:0.999536712584605 37758 chr5 37697794 37697794 1 + C T STAD 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACTTGGGCACAGACACTTCTTGCGTGACTTTTTCCT < 41bp 1 0.266415090497018 1 0.0555252730846405 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697794 nonsynonymous SNV 0.990 0 9 hm5C_associated_SNPs_38310 0 0 0 2 2 Nucleus 1 0.500231645283427 1 0.999536709433146 hm5C_site_37758 DeepMRMD:1;iRNA_m5C:0.999536709433146 37759 chr20 23350284 23350284 1 + G A STAD 23350279 + 23350259 23350299 41 TTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCGCATCCA TTCACCCAGCTCAACGCCCTCCAGCACCACCGCCGCATCCA < 41bp 1 0.388123659107844 1 0.687475323677063 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350279 chr20:23350284 nonsynonymous SNV 0.990 3 26 hm5C_associated_SNPs_38311 0 0 0 0 2 Cytosol 1 0.500231643921608 0.625049352645874 0.999536712156784 hm5C_site_37759 DeepMRMD:0.625049352645874;iRNA_m5C:0.999536712156784 37760 chr9 18721613 18721613 1 + C T STAD 18721629 + 18721609 18721649 41 GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT GCCGTCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT < 41bp 1 0.403920499666111 1 0.311411410570145 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18721629 chr9:18721613 synonymous SNV . 0 5 hm5C_associated_SNPs_38312 0 0 0 0 2 Nucleus 1 0.500231665062548 1 0.999536669874903 hm5C_site_37760 DeepMRMD:1;iRNA_m5C:0.999536669874903 37761 chr19 41040082 41040082 1 + C T STAD 41040069 + 41040049 41040089 41 CGAGATCCGCCAGTGCTGGGCGGAGCTGGAGAGCACCACCC CGAGATCCGCCAGTGCTGGGCGGAGCTGGAGAGTACCACCC < 41bp 1 0.483673308754836 1 0.613310694694519 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41040069 chr19:41040082 synonymous SNV . 0 34 hm5C_associated_SNPs_38313 0 0 0 0 1 cytosol 1 0.500231643921092 0.773378610610962 0.999536712157815 hm5C_site_37761 DeepMRMD:0.773378610610962;iRNA_m5C:0.999536712157815 37762 chr1 3328745 3328745 1 + G A STAD 3328725 + 3328705 3328745 41 GTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCG GTTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCA < 41bp 1 0.453519450039428 1 0.480459779500961 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328725 chr1:3328745 nonsynonymous SNV 0.272 1 41 hm5C_associated_SNPs_38315 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37762 DeepMRMD:1;iRNA_m5C:0.999536712157815 37763 chr1 3328745 3328745 1 + G A STAD 3328726 + 3328706 3328746 41 TTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGT TTTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCAT < 41bp 1 0.527886145965531 1 0.554171741008759 experiment 0.944227708068938 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328726 chr1:3328745 nonsynonymous SNV 0.272 1 40 hm5C_associated_SNPs_38316 0 0 0 0 0 Nucleus 1 0.500231643921096 0.891656517982482 0.999536712157808 hm5C_site_37763 DeepMRMD:0.891656517982482;iRNA_m5C:0.999536712157808 37764 chr1 3328745 3328745 1 + G A STAD 3328727 + 3328707 3328747 41 TTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCGTG TTGGGGGCGGCTTGGCGCCCCCGGGGGCCCCGAACAGCATG < 41bp 1 0.548390900484653 1 0.782048344612122 experiment 0.903218199030694 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328727 chr1:3328745 nonsynonymous SNV 0.272 1 39 hm5C_associated_SNPs_38317 0 0 0 0 0 Nucleus 1 0.500231643921092 0.435903310775756 0.999536712157815 hm5C_site_37764 DeepMRMD:0.435903310775756;iRNA_m5C:0.999536712157815 37765 chr18 34349257 34349257 1 + G A STAD 34349255 + 34349235 34349275 41 TAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCA TAGTTCCTGGACTATGGGAACTAATGACTCGCCCAATGTCA < 41bp 1 0.0844956047001494 1 0.0320083200931549 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34349255 chr18:34349257 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_38318 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37765 DeepMRMD:1;iRNA_m5C:0.999536712157815 37766 chr1 984699 984699 1 + G A STAD 984697 + 984677 984717 41 TGGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCAC TGGCACCGCCTGGAGCTGTCCCAGCACTGGCGCCGGGGCAC < 41bp 1 0.17394097102001 1 0.463614076375961 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984697 chr1:984699 nonsynonymous SNV 0.189 4 23 hm5C_associated_SNPs_38319 0 0 1 0 1 Endoplasmic reticulum 1 0.500260042859726 1 0.999479914280547 hm5C_site_37766 DeepMRMD:1;iRNA_m5C:0.999479914280547 37767 chr1 984699 984699 1 + G A STAD 984701 + 984681 984721 41 ACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCACCCTC ACCGCCTGGAGCTGTCCCAGCACTGGCGCCGGGGCACCCTC < 41bp 1 0.315023936291663 1 0.399055391550064 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984701 chr1:984699 nonsynonymous SNV 0.189 4 19 hm5C_associated_SNPs_38321 0 0 1 0 1 Endoplasmic reticulum 1 0.500231642650995 1 0.99953671469801 hm5C_site_37767 DeepMRMD:1;iRNA_m5C:0.99953671469801 37768 chr1 984699 984699 1 + G A STAD 984709 + 984689 984729 41 GAGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGA GAGCTGTCCCAGCACTGGCGCCGGGGCACCCTCTCGGTGGA < 41bp 1 0.382566800124853 1 0.699392318725586 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984709 chr1:984699 nonsynonymous SNV 0.189 4 11 hm5C_associated_SNPs_38322 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645494291 0.601215362548828 0.999536709011417 hm5C_site_37768 DeepMRMD:0.601215362548828;iRNA_m5C:0.999536709011417 37769 chr1 984699 984699 1 + G A STAD 984710 + 984690 984730 41 AGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGAT AGCTGTCCCAGCACTGGCGCCGGGGCACCCTCTCGGTGGAT < 41bp 1 0.459301784859321 1 0.758155941963196 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984710 chr1:984699 nonsynonymous SNV 0.189 4 10 hm5C_associated_SNPs_38323 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.483688116073608 0.999536712157815 hm5C_site_37769 DeepMRMD:0.483688116073608;iRNA_m5C:0.999536712157815 37770 chr14 21542374 21542374 1 + T G STAD 21542358 + 21542338 21542378 41 TACAAGGCATCAACAAGGACCGGCCAACAGGTCGCCTCAGT TACAAGGCATCAACAAGGACCGGCCAACAGGTCGCCGCAGT < 41bp 1 0.207640028676955 1 0.437777996063232 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21542358 chr14:21542374 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_38325 0 0 0 0 0 Cytosol 1 0.500231643935997 1 0.999536712128007 hm5C_site_37770 DeepMRMD:1;iRNA_m5C:0.999536712128007 37771 chr5 72201192 72201192 1 + T C STAD 72201196 + 72201176 72201216 41 GTTTCTCTGACCAGTTTCCTCTTCCCTTAAAAGAGCGTCTT GTTTCTCTGACCAGTTCCCTCTTCCCTTAAAAGAGCGTCTT < 41bp 1 0.174305709260739 1 0.560324430465698 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72201196 chr5:72201192 synonymous SNV . 0 17 hm5C_associated_SNPs_38326 0 0 1 0 1 Cytosol 1 0.500231643921092 0.879351139068604 0.999536712157815 hm5C_site_37771 DeepMRMD:0.879351139068604;iRNA_m5C:0.999536712157815 37772 chr11 68177424 68177424 1 + G A STAD 68177413 + 68177393 68177433 41 CGCCTTCATGAACGGGAGCTCGGTGGAGCACGTGGTGGAGT CGCCTTCATGAACGGGAGCTCGGTGGAGCACATGGTGGAGT < 41bp 1 0.440304152650468 1 0.623640477657318 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177413 chr11:68177424 nonsynonymous SNV 0.956 4 32 hm5C_associated_SNPs_38327 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164392 0.752719044685364 0.99953671216 hm5C_site_37772 DeepMRMD:0.752719044685364;iRNA_m5C:0.99953671216 37773 chr16 31122516 31122516 1 + C T STAD 31122511 + 31122491 31122531 41 CCTATGCCACTGGACTACATCCTGCCGGAGCTGCTCAAGAA CCTATGCCACTGGACTACATCCTGCTGGAGCTGCTCAAGAA < 41bp 1 0.186161867492705 1 0.188781321048737 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BCKDK ENSG00000103507 CDS Human protein_coding chr16:31122511 chr16:31122516 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_38328 0 0 1 0 1 Ribosome 1 0.500220991244264 1 0.999558017511472 hm5C_site_37773 DeepMRMD:1;iRNA_m5C:0.999558017511472 37774 chr11 65403889 65403889 1 + G A STAD 65403903 + 65403883 65403923 41 CACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGC CACCAGACCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGC < 41bp 1 0.185635713727987 1 0.341803729534149 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403903 chr11:65403889 nonsynonymous SNV 0.999 2 7 hm5C_associated_SNPs_38329 0 0 1 0 1 Ribosome 1 0.500231643921249 1 0.999536712157502 hm5C_site_37774 DeepMRMD:1;iRNA_m5C:0.999536712157502 37775 chr11 65403889 65403889 1 + G A STAD 65403904 + 65403884 65403924 41 ACCAGGCCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGCT ACCAGACCCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGCT < 41bp 1 0.418166275207156 1 0.610556602478027 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403904 chr11:65403889 nonsynonymous SNV 0.999 2 6 hm5C_associated_SNPs_38330 0 0 1 0 1 Ribosome 1 0.500231643921092 0.778886795043946 0.999536712157815 hm5C_site_37775 DeepMRMD:0.778886795043946;iRNA_m5C:0.999536712157815 37776 chr11 67376963 67376963 1 + G T STAD 67376960 + 67376940 67376980 41 TGAACGCAGACGAGGGGGAGCCGGGCACCTGCAAGGACCGG TGAACGCAGACGAGGGGGAGCCGTGCACCTGCAAGGACCGG < 41bp 1 0.14761928765657 1 0.410029947757721 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376960 chr11:67376963 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_38331 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37776 DeepMRMD:1;iRNA_m5C:0.999536712157815 37777 chr11 93530729 93530729 1 + T C STAD 93530714 + 93530694 93530734 41 TTGTTAGTTTCATAAACAGACCTTGAGTTCCATCATGATGC TTGTTAGTTTCATAAACAGACCTTGAGTTCCATCACGATGC < 41bp 1 0.037881909150022 1 0.0139822661876678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED17 ENSG00000042429 CDS Human protein_coding chr11:93530714 chr11:93530729 nonsynonymous SNV 0.996 0 36 hm5C_associated_SNPs_38332 0 0 1 0 1 Cytosol 1 0.500231963654697 1 0.999536072690606 hm5C_site_37777 DeepMRMD:1;iRNA_m5C:0.999536072690606 37778 chr20 43545461 43545461 1 + C T STAD 43545459 + 43545439 43545479 41 CATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC CATTTTGAGACCCATGAGGCCGTACAGCAGGCCATCAACAC < 41bp 1 0.0961904035852063 1 0.0257230699062347 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545459 chr20:43545461 nonsynonymous SNV 0.067 4 23 hm5C_associated_SNPs_38333 0 0 1 1 1 chromatin 1 0.500231643919876 1 0.999536712160249 hm5C_site_37778 DeepMRMD:1;iRNA_m5C:0.999536712160249 37779 chr17 46189966 46189966 1 + C T STAD 46189985 + 46189965 46190005 41 CCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT CTGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT < 41bp 1 0.133432070120468 1 0.240906685590744 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 CDS Human protein_coding chr17:46189985 chr17:46189966 stopgain 0.997 1 2 hm5C_associated_SNPs_38334 0 0 1 0 2 Cytosol 1 0.5002316439211 1 0.9995367121578 hm5C_site_37779 DeepMRMD:1;iRNA_m5C:0.9995367121578 37780 chr19 49713993 49713993 1 + C T STAD 49713999 + 49713979 49714019 41 CTAAGGAAGCCGAGCGGAAGCTGCTAACGTGGGAATCGGTG CTAAGGAAGCCGAGTGGAAGCTGCTAACGTGGGAATCGGTG < 41bp 1 0.413298472943521 1 0.367744028568268 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49713999 chr19:49713993 nonsynonymous SNV 0.049 3 15 hm5C_associated_SNPs_38335 0 0 0 0 1 chromatin 1 0.500231643941869 1 0.999536712116262 hm5C_site_37780 DeepMRMD:1;iRNA_m5C:0.999536712116262 37781 chr15 74240214 74240214 1 + G A STAD 74240213 + 74240193 74240233 41 TGCCAGTGGATCGACATAACCGACGTGCAGCCTGGGAACTA TGCCAGTGGATCGACATAACCAACGTGCAGCCTGGGAACTA < 41bp 1 0.661182902316171 1 0.341338068246841 experiment 0.677634195367657 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74240213 chr15:74240214 nonsynonymous SNV 0.197 4 22 hm5C_associated_SNPs_38337 0 0 0 0 2 exosome 1 0.500231643667675 1 0.999536712664651 hm5C_site_37781 DeepMRMD:1;iRNA_m5C:0.999536712664651 37782 chr17 74383602 74383602 1 + G A STAD 74383622 + 74383602 74383642 41 GGTTGCGTGGAGCCCCCGCCCAGCTGGAAGCCCCAGCAGAT AGTTGCGTGGAGCCCCCGCCCAGCTGGAAGCCCCAGCAGAT < 41bp 1 0.580779927723416 1 0.723006367683411 experiment 0.838440144553169 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74383622 chr17:74383602 nonsynonymous SNV 0.183 1 1 hm5C_associated_SNPs_38338 0 0 1 0 0 nucleolus 1 0.500231643921092 0.553987264633178 0.999536712157815 hm5C_site_37782 DeepMRMD:0.553987264633178;iRNA_m5C:0.999536712157815 37783 chr1 2419116 2419116 1 + C T STAD 2419119 + 2419099 2419139 41 AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACAAATA AAGATCCTCTTCAAAGATGTCATTGAAACCATCAACAAATA < 41bp 1 0.0492803939363359 1 0.029834657907486 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2419119 chr1:2419116 synonymous SNV . 0 18 hm5C_associated_SNPs_38339 0 0 0 0 2 nucleus 1 0.50042312818215 1 0.9991537436357 hm5C_site_37783 DeepMRMD:1;iRNA_m5C:0.9991537436357 37784 chr5 173378896 173378896 1 + C T STAD 173378893 + 173378873 173378913 41 ATGGTTCACAGCCACTTGACCCACGAAAAACTATATTTGTT ATGGTTCACAGCCACTTGACCCATGAAAAACTATATTTGTT < 41bp 1 0.0730397349700726 1 0.284194558858871 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173378893 chr5:173378896 stopgain 1.000 1 24 hm5C_associated_SNPs_38340 0 0 1 0 2 Ribosome 1 0.500230634744444 1 0.999538730511113 hm5C_site_37784 DeepMRMD:1;iRNA_m5C:0.999538730511113 37785 chr5 82834774 82834774 1 + T G STAD 82834788 + 82834768 82834808 41 CATATCTGACTCAGAAGGACCCAGTAGCACCATGGTCAGCA CATATCGGACTCAGAAGGACCCAGTAGCACCATGGTCAGCA < 41bp 1 0.0768751528380117 1 0.135614454746246 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82834788 chr5:82834774 synonymous SNV . 0 7 hm5C_associated_SNPs_38341 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_37785 DeepMRMD:1;iRNA_m5C:0.999536712157813 37786 chr11 45832837 45832837 1 + C T STAD 45832817 + 45832797 45832837 41 GCCTACACCTGGGTCAGGGGCTGGGAGATGAAGAAGACTCC GCCTACACCTGGGTCAGGGGCTGGGAGATGAAGAAGACTCT < 41bp 1 0.564337129049379 1 0.515399038791656 experiment 0.871325741901243 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC35C1 ENSG00000181830 CDS Human protein_coding chr11:45832817 chr11:45832837 nonsynonymous SNV 0.041 0 41 hm5C_associated_SNPs_38342 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.969201922416688 0.999536712157815 hm5C_site_37786 DeepMRMD:0.969201922416688;iRNA_m5C:0.999536712157815 37787 chr11 62502877 62502877 1 + G A STAD 62502861 + 62502841 62502881 41 TTTGGCCCATTAGCTTGTCTCCTTCAGATGGAGCCCGTGAA TTTGGCCCATTAGCTTGTCTCCTTCAGATGGAGCCCATGAA < 41bp 1 0.0299810590926801 1 0.0481404364109039 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTC9C ENSG00000162222 CDS Human protein_coding chr11:62502861 chr11:62502877 nonsynonymous SNV 0.993 2 37 hm5C_associated_SNPs_38343 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_37787 DeepMRMD:1;iRNA_m5C:0.999536712157816 37788 chr6 111288882 111288882 1 + T C STAD 111288899 + 111288879 111288919 41 GAGTTGTGAACAGGAGAAACCAATGCACTTGGAAATAGAAG GAGCTGTGAACAGGAGAAACCAATGCACTTGGAAATAGAAG < 41bp 1 0.252222784635355 1 0.338318884372711 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C6 ENSG00000155115 CDS Human protein_coding chr6:111288899 chr6:111288882 synonymous SNV . 0 4 hm5C_associated_SNPs_38344 0 0 1 0 0 Ribosome 1 0.500231643674177 1 0.999536712651645 hm5C_site_37788 DeepMRMD:1;iRNA_m5C:0.999536712651645 37789 chr19 50304308 50304308 1 + C T STAD 50304305 + 50304285 50304325 41 GGAACCTGATTGCTGGGGACCCCCGCTCCAGGTGAGGGAGC GGAACCTGATTGCTGGGGACCCCTGCTCCAGGTGAGGGAGC < 41bp 1 0.097943240666306 1 0.138675093650818 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50304305 chr19:50304308 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_38345 0 0 1 0 2 Ribosome 1 0.500231643921058 1 0.999536712157883 hm5C_site_37789 DeepMRMD:1;iRNA_m5C:0.999536712157883 37790 chr7 4824582 4824582 1 + C T STAD 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCTGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA < 41bp 1 0.148803391799928 1 0.369605958461761 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824582 synonymous SNV . 0 3 hm5C_associated_SNPs_38346 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37790 DeepMRMD:1;iRNA_m5C:0.999536712157815 37791 chr20 44571745 44571745 1 + C A STAD 44571747 + 44571727 44571767 41 GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCGC GTCCTGCAGGCATTGAGCATCCACGGGAGTCTTTCAACCGC < 41bp 1 0.396833653459191 1 0.434767723083496 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571747 chr20:44571745 nonsynonymous SNV 0.687 4 19 hm5C_associated_SNPs_38347 0 0 0 0 1 chromatin 1 0.500231643835273 1 0.999536712329455 hm5C_site_37791 DeepMRMD:1;iRNA_m5C:0.999536712329455 37792 chr6 161510475 161510475 1 + T C STAD 161510492 + 161510472 161510512 41 CGGTCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC CGGCCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC < 41bp 1 0.692582408535559 1 0.715278744697571 experiment 0.614835182928883 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161510492 chr6:161510475 nonsynonymous SNV 0.990 0 4 hm5C_associated_SNPs_38348 0 0 1 0 1 Cytosol 1 0.500230618461592 0.569442510604858 0.999538763076817 hm5C_site_37792 DeepMRMD:0.569442510604858;iRNA_m5C:0.999538763076817 37793 chr20 34430649 34430649 1 + G A STAD 34430662 + 34430642 34430682 41 CTTGCATGAAGAGGATGGATCTTCTGTGAGTAACAAATCTG CTTGCATAAAGAGGATGGATCTTCTGTGAGTAACAAATCTG < 41bp 1 0.141202456631075 1 0.0790989995002747 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF20 ENSG00000025293 CDS Human protein_coding chr20:34430662 chr20:34430649 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_38349 0 0 1 0 1 Nucleus 1 0.500231643912024 1 0.999536712175952 hm5C_site_37793 DeepMRMD:1;iRNA_m5C:0.999536712175952 37794 chr12 109547651 109547651 1 + A G STAD 109547637 + 109547617 109547657 41 TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTACAGACG TTCTTGATCTTTTTCAGAAGCGGCACCATGTACTGCAGACG < 41bp 1 0.597390317639233 1 0.380740910768509 experiment 0.805219364721534 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547637 chr12:109547651 synonymous SNV . 0 35 hm5C_associated_SNPs_38350 0 0 1 0 1 Ribosome 1 0.500231679386521 1 0.999536641226958 hm5C_site_37794 DeepMRMD:1;iRNA_m5C:0.999536641226958 37795 chr12 109547651 109547651 1 + A G STAD 109547670 + 109547650 109547690 41 TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG TGCAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG < 41bp 1 0.0495291942844189 1 0.0481204092502594 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547670 chr12:109547651 synonymous SNV . 0 2 hm5C_associated_SNPs_38351 0 0 1 0 1 Ribosome 1 0.500231642870088 1 0.999536714259824 hm5C_site_37795 DeepMRMD:1;iRNA_m5C:0.999536714259824 37796 chr16 30749172 30749172 1 + C G STAD 30749182 + 30749162 30749202 41 TCTCTCACCCCTTCTGCACCCAGCCTGACCTTGGAGGCTGG TCTCTCACCCGTTCTGCACCCAGCCTGACCTTGGAGGCTGG < 41bp 1 0.245818917283754 1 0.372239738702774 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30749182 chr16:30749172 nonsynonymous SNV 0.513 2 11 hm5C_associated_SNPs_38352 0 0 1 0 0 Ribosome 1 0.500231643921458 1 0.999536712157084 hm5C_site_37796 DeepMRMD:1;iRNA_m5C:0.999536712157084 37797 chr1 249210816 249210816 1 + G A STAD 249210825 + 249210805 249210845 41 GTCATTGCTGGGAGAGGTATCCACTCAAAGGTGAAGTCTGC GTCATTGCTGGAAGAGGTATCCACTCAAAGGTGAAGTCTGC < 41bp 1 0.162935584415321 1 0.221155881881714 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249210825 chr1:249210816 synonymous SNV . 0 12 hm5C_associated_SNPs_38353 0 0 1 0 1 Cytosol 1 0.500231693012553 1 0.999536613974893 hm5C_site_37797 DeepMRMD:1;iRNA_m5C:0.999536613974893 37798 chr17 7160303 7160303 1 + C A STAD 7160314 + 7160294 7160334 41 TACCATGGGCCAGGCCTCGGCCCACATCCTGTGTCGGAGGC TACCATGGGACAGGCCTCGGCCCACATCCTGTGTCGGAGGC < 41bp 1 0.230354019357246 1 0.345026552677155 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160314 chr17:7160303 synonymous SNV . 0 10 hm5C_associated_SNPs_38355 0 0 1 0 1 Cytosol 1 0.50023164391201 1 0.99953671217598 hm5C_site_37798 DeepMRMD:1;iRNA_m5C:0.99953671217598 37799 chr17 7160303 7160303 1 + C A STAD 7160315 + 7160295 7160335 41 ACCATGGGCCAGGCCTCGGCCCACATCCTGTGTCGGAGGCC ACCATGGGACAGGCCTCGGCCCACATCCTGTGTCGGAGGCC < 41bp 1 0.514577942573851 1 0.365399420261383 experiment 0.970844114852299 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160315 chr17:7160303 synonymous SNV . 0 9 hm5C_associated_SNPs_38356 0 0 1 0 1 Cytosol 1 0.500231492465748 1 0.999537015068504 hm5C_site_37799 DeepMRMD:1;iRNA_m5C:0.999537015068504 37800 chr17 7160303 7160303 1 + C A STAD 7160316 + 7160296 7160336 41 CCATGGGCCAGGCCTCGGCCCACATCCTGTGTCGGAGGCCC CCATGGGACAGGCCTCGGCCCACATCCTGTGTCGGAGGCCC < 41bp 1 0.413908342821865 1 0.0708182454109192 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160316 chr17:7160303 synonymous SNV . 0 8 hm5C_associated_SNPs_38357 0 0 1 0 1 Cytosol 1 0.500231643907042 1 0.999536712185916 hm5C_site_37800 DeepMRMD:1;iRNA_m5C:0.999536712185916 37801 chr10 76788893 76788893 1 + C A STAD 76788892 + 76788872 76788912 41 TGACAGCCACATGGAGTCTGCCGAAGTGGAGAAGGAAGAGC TGACAGCCACATGGAGTCTGCAGAAGTGGAGAAGGAAGAGC < 41bp 1 0.536766504910244 1 0.494789004325867 experiment 0.926466990179512 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KAT6B ENSG00000156650 CDS Human protein_coding chr10:76788892 chr10:76788893 synonymous SNV . 0 22 hm5C_associated_SNPs_38359 0 0 1 0 0 Nucleus 1 0.500231643921013 1 0.999536712157974 hm5C_site_37801 DeepMRMD:1;iRNA_m5C:0.999536712157974 37802 chr14 105360623 105360623 1 + A G STAD 105360625 + 105360605 105360645 41 CCCCCTACCTCGGACAGGATCCTCTTTCAGAACACAGGGAG CCCCCTACCTCGGACAGGGTCCTCTTTCAGAACACAGGGAG < 41bp 1 0.0253856316177942 1 0.113096296787262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105360625 chr14:105360623 nonsynonymous SNV 0.957 0 19 hm5C_associated_SNPs_38360 0 0 0 0 2 Ribosome 1 0.500231694502296 1 0.999536610995408 hm5C_site_37802 DeepMRMD:1;iRNA_m5C:0.999536610995408 37803 chr1 116940630 116940630 1 + G T STAD 116940615 + 116940595 116940635 41 GAGATAGTGTTTGCCAGGACCTCCCCTCAGCAGAAGCTCAT GAGATAGTGTTTGCCAGGACCTCCCCTCAGCAGAATCTCAT < 41bp 1 0.223245074893915 1 0.178456783294678 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116940615 chr1:116940630 nonsynonymous SNV 1.000 5 36 hm5C_associated_SNPs_38361 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_37803 DeepMRMD:1;iRNA_m5C:0.999536712157814 37804 chr2 27157526 27157526 1 + G A STAD 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACACGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG < 41bp 1 0.375232577159843 1 0.811997950077057 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157526 nonsynonymous SNV 0.781 5 5 hm5C_associated_SNPs_38362 0 0 0 0 2 Ribosome 1 0.500231643921093 0.376004099845886 0.999536712157814 hm5C_site_37804 DeepMRMD:0.376004099845886;iRNA_m5C:0.999536712157814 37805 chr11 9462002 9462002 1 + A C STAD 9462007 + 9461987 9462027 41 ATTATGACTTGGCAGAGGAACTGGGGAGTGATGAAGATGAT ATTATGACTTGGCAGCGGAACTGGGGAGTGATGAAGATGAT < 41bp 1 0.611801170059647 1 0.460153162479401 experiment 0.776397659880707 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462007 chr11:9462002 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_38363 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_37805 DeepMRMD:1;iRNA_m5C:0.999536712157814 37806 chr11 65733407 65733407 1 + T G STAD 65733404 + 65733384 65733424 41 GGGCCTCACCGTGGAGCATGCCATTGATTCCTTCCGAGAAG GGGCCTCACCGTGGAGCATGCCAGTGATTCCTTCCGAGAAG < 41bp 1 0.310670205197306 1 0.252646148204803 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SART1 ENSG00000175467 CDS Human protein_coding chr11:65733404 chr11:65733407 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_38364 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37806 DeepMRMD:1;iRNA_m5C:0.999536712157815 37807 chr1 29069012 29069012 1 + C T STAD 29069000 + 29068980 29069020 41 CTCCTATTCTTTGGGTGAAGCTGCTTGGTCTACGGGGGGTG CTCCTATTCTTTGGGTGAAGCTGCTTGGTCTATGGGGGGTG < 41bp 1 0.507763230499325 1 0.259006857872009 experiment 0.984473539001349 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069000 chr1:29069012 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_38365 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37807 DeepMRMD:1;iRNA_m5C:0.999536712157815 37808 chr21 47841990 47841990 1 + G A STAD 47842001 + 47841981 47842021 41 GTTTCAGCCGCTGCCGGAAGCCATGAAGGAGAAGGAAGTGC GTTTCAGCCACTGCCGGAAGCCATGAAGGAGAAGGAAGTGC < 41bp 1 0.0468475164425889 1 0.231780380010605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47842001 chr21:47841990 synonymous SNV . 0 10 hm5C_associated_SNPs_38366 0 0 1 0 1 Exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_37808 DeepMRMD:1;iRNA_m5C:0.999536712157815 37809 chr19 7620635 7620635 1 + C T STAD 7620645 + 7620625 7620665 41 GCAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA GCAGCGGGCCTGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA < 41bp 1 0.267417857884463 1 0.432141751050949 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620645 chr19:7620635 nonsynonymous SNV 0.994 3 11 hm5C_associated_SNPs_38368 0 0 1 0 1 Ribosome 1 0.500231650895807 1 0.999536698208386 hm5C_site_37809 DeepMRMD:1;iRNA_m5C:0.999536698208386 37810 chr19 7620635 7620635 1 + C T STAD 7620646 + 7620626 7620666 41 CAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG CAGCGGGCCTGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG < 41bp 1 0.474405093642405 1 0.735196471214294 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620646 chr19:7620635 nonsynonymous SNV 0.994 3 10 hm5C_associated_SNPs_38369 0 0 1 0 1 Ribosome 1 0.500231643921092 0.529607057571412 0.999536712157815 hm5C_site_37810 DeepMRMD:0.529607057571412;iRNA_m5C:0.999536712157815 37811 chr1 95657235 95657235 1 + C T STAD 95657252 + 95657232 95657272 41 TTCCGTGTATGGAACAGAACCCTACATAAGGCTTGGAGTTT TTCTGTGTATGGAACAGAACCCTACATAAGGCTTGGAGTTT < 41bp 1 0.0353064938407536 1 0.115271389484406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM56 ENSG00000152078 CDS Human protein_coding chr1:95657252 chr1:95657235 synonymous SNV . 0 4 hm5C_associated_SNPs_38370 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643991946 1 0.999536712016107 hm5C_site_37811 DeepMRMD:1;iRNA_m5C:0.999536712016107 37812 chr6 35392251 35392251 1 + G A STAD 35392256 + 35392236 35392276 41 CAGTGGAGACCGTGCGGGAGCTCACTGAGTTCGCCAAGAGC CAGTGGAGACCGTGCAGGAGCTCACTGAGTTCGCCAAGAGC < 41bp 1 0.218988259894296 1 0.111109375953674 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPARD ENSG00000112033 CDS Human protein_coding chr6:35392256 chr6:35392251 nonsynonymous SNV 0.856 3 16 hm5C_associated_SNPs_38372 0 0 1 0 0 Cytosol 1 0.500231643920663 1 0.999536712158675 hm5C_site_37812 DeepMRMD:1;iRNA_m5C:0.999536712158675 37813 chr6 35392251 35392251 1 + G A STAD 35392258 + 35392238 35392278 41 GTGGAGACCGTGCGGGAGCTCACTGAGTTCGCCAAGAGCAT GTGGAGACCGTGCAGGAGCTCACTGAGTTCGCCAAGAGCAT < 41bp 1 0.41657032013323 1 0.119407385587692 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPARD ENSG00000112033 CDS Human protein_coding chr6:35392258 chr6:35392251 nonsynonymous SNV 0.856 3 14 hm5C_associated_SNPs_38373 0 0 1 0 0 Cytosol 1 0.500229070534785 1 0.999541858930431 hm5C_site_37813 DeepMRMD:1;iRNA_m5C:0.999541858930431 37814 chr16 72134477 72134477 1 + G A STAD 72134463 + 72134443 72134483 41 GTGCACAATCTGGTGCCTCCCTTTCTGGATGGGCGCATTGT GTGCACAATCTGGTGCCTCCCTTTCTGGATGGGCACATTGT < 41bp 1 0.0778507495910708 1 0.0394468009471893 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72134463 chr16:72134477 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_38374 0 0 1 0 0 Cytosol 1 0.500237349015336 1 0.999525301969328 hm5C_site_37814 DeepMRMD:1;iRNA_m5C:0.999525301969328 37815 chr19 40882619 40882619 1 + C T STAD 40882624 + 40882604 40882644 41 TCGGAGCCATCCATGCGGGCCTTCCTGCTCTCTCTGGCTGC TCGGAGCCATCCATGTGGGCCTTCCTGCTCTCTCTGGCTGC < 41bp 1 0.0967221388728527 1 0.0333593487739563 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40882624 chr19:40882619 nonsynonymous SNV 0.850 1 16 hm5C_associated_SNPs_38375 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157813 hm5C_site_37815 DeepMRMD:1;iRNA_m5C:0.999536712157813 37816 chr20 279025 279025 1 + C T STAD 279018 + 278998 279038 41 CATCCTCTTCCGGAACGAGACGGTGGACGTGGAGGACATTG CATCCTCTTCCGGAACGAGACGGTGGATGTGGAGGACATTG < 41bp 1 0.570666972353456 1 0.500954806804657 experiment 0.858666055293088 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZCCHC3 ENSG00000177764 CDS Human other chr20:279018 chr20:279025 synonymous SNV . 0 28 hm5C_associated_SNPs_38376 0 0 1 1 0 Cytosol 1 0.500231360168206 0.998090386390686 0.999537279663588 hm5C_site_37816 DeepMRMD:0.998090386390686;iRNA_m5C:0.999537279663588 37817 chr8 30623815 30623815 1 + C T STAD 30623821 + 30623801 30623841 41 CTTCCTTTCCCAGACGGCCTCTGGCAGTGGAGGGAGGCCAG CTTCCTTTCCCAGATGGCCTCTGGCAGTGGAGGGAGGCCAG < 41bp 1 0.678383021851424 1 0.484572261571884 experiment 0.643233956297152 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30623821 chr8:30623815 . 0.217 2 15 hm5C_associated_SNPs_38377 0 0 1 0 1 Endoplasmic reticulum 1 0.500231669628648 1 0.999536660742705 hm5C_site_37817 DeepMRMD:1;iRNA_m5C:0.999536660742705 37818 chr2 235949729 235949729 1 + T C STAD 235949741 + 235949721 235949761 41 ACATCCCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAAC ACATCCCCCCCTCCTATGTGCAGCCCTTGAACTACCGGAAC < 41bp 1 0.181311202659309 1 0.0971392095088959 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235949741 chr2:235949729 nonsynonymous SNV 0.976 2 9 hm5C_associated_SNPs_38378 0 0 1 0 0 cytosol 1 0.50023164392148 1 0.999536712157039 hm5C_site_37818 DeepMRMD:1;iRNA_m5C:0.999536712157039 37819 chr2 235949729 235949729 1 + T C STAD 235949744 + 235949724 235949764 41 TCCCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAACTCA TCCCCCCCTCCTATGTGCAGCCCTTGAACTACCGGAACTCA < 41bp 1 0.0159238473832295 1 0.0474013090133667 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235949744 chr2:235949729 nonsynonymous SNV 0.976 2 6 hm5C_associated_SNPs_38379 0 0 1 0 0 cytosol 1 0.500231404644935 1 0.99953719071013 hm5C_site_37819 DeepMRMD:1;iRNA_m5C:0.99953719071013 37820 chr2 235949729 235949729 1 + T C STAD 235949745 + 235949725 235949765 41 CCCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAACTCAA CCCCCCCTCCTATGTGCAGCCCTTGAACTACCGGAACTCAA < 41bp 1 0.0221261045230919 1 0.0944024622440338 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235949745 chr2:235949729 nonsynonymous SNV 0.976 2 5 hm5C_associated_SNPs_38380 0 0 1 0 0 cytosol 1 0.500231643918742 1 0.999536712162516 hm5C_site_37820 DeepMRMD:1;iRNA_m5C:0.999536712162516 37821 chr1 27023420 27023420 1 + C T STAD 27023411 + 27023391 27023431 41 CCGCCGTCTTCCACCAACAACATGGCGGACAACAAAGCCCT CCGCCGTCTTCCACCAACAACATGGCGGATAACAAAGCCCT < 41bp 1 0.334622214252179 1 0.34809023141861 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27023411 chr1:27023420 stopgain 1.000 0 30 hm5C_associated_SNPs_38381 0 0 1 0 0 Nucleus 1 0.500231643921104 1 0.999536712157791 hm5C_site_37821 DeepMRMD:1;iRNA_m5C:0.999536712157791 37822 chr2 97215165 97215165 1 + C T STAD 97215177 + 97215157 97215197 41 ACGCCCATCGAGAGGGTGCCCCATCTCGGCTTCAAGCAGAG ACGCCCATTGAGAGGGTGCCCCATCTCGGCTTCAAGCAGAG < 41bp 1 0.112500136871503 1 0.105108916759491 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID5A ENSG00000196843 CDS Human protein_coding chr2:97215177 chr2:97215165 synonymous SNV . 0 9 hm5C_associated_SNPs_38382 0 0 0 0 0 Cytosol 1 0.500231643239189 1 0.999536713521622 hm5C_site_37822 DeepMRMD:1;iRNA_m5C:0.999536713521622 37823 chr11 67075666 67075666 1 + C T STAD 67075677 + 67075657 67075697 41 CTGGAGCTGCGCCTGGGGCTCCCCCTCCAGCAGTACCGTGA CTGGAGCTGTGCCTGGGGCTCCCCCTCCAGCAGTACCGTGA < 41bp 1 0.180471987157035 1 0.0694246292114258 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075677 chr11:67075666 nonsynonymous SNV 0.900 4 10 hm5C_associated_SNPs_38383 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37823 DeepMRMD:1;iRNA_m5C:0.999536712157815 37824 chr19 4954689 4954689 1 + G A STAD 4954693 + 4954673 4954713 41 AGCAGGGCGGGTCCCCGCGCCGGACATCCAAGAAAACCAAG AGCAGGGCGGGTCCCCACGCCGGACATCCAAGAAAACCAAG < 41bp 1 0.320212507332926 1 0.5742427110672 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063;ENSG00000034063 ncRNA_exonic;splicing Human other chr19:4954693 chr19:4954689 . . 0 17 hm5C_associated_SNPs_38384 0 0 0 0 2 chromatin 1 0.50023164392112 0.8515145778656 0.999536712157761 hm5C_site_37824 DeepMRMD:0.8515145778656;iRNA_m5C:0.999536712157761 37825 chr1 22307617 22307617 1 + G A STAD 22307603 + 22307583 22307623 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCT GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCT < 41bp 1 0.394337586398695 1 0.062059223651886 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307603 chr1:22307617 nonsynonymous SNV 0.008 0 35 hm5C_associated_SNPs_38385 0 0 0 0 2 unknown 1 0.500231643919804 1 0.999536712160393 hm5C_site_37825 DeepMRMD:1;iRNA_m5C:0.999536712160393 37826 chr1 22307617 22307617 1 + G A STAD 22307604 + 22307584 22307624 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTC AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTC < 41bp 1 0.0796023910388128 1 0.0395603477954865 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307604 chr1:22307617 nonsynonymous SNV 0.008 0 34 hm5C_associated_SNPs_38386 0 0 0 0 2 unknown 1 0.500231643961758 1 0.999536712076485 hm5C_site_37826 DeepMRMD:1;iRNA_m5C:0.999536712076485 37827 chr1 22307617 22307617 1 + G A STAD 22307605 + 22307585 22307625 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCT GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTCT < 41bp 1 0.0377496767401822 1 0.0817853212356567 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307605 chr1:22307617 nonsynonymous SNV 0.008 0 33 hm5C_associated_SNPs_38387 0 0 0 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_37827 DeepMRMD:1;iRNA_m5C:0.999536712157815 37828 chr1 22307617 22307617 1 + G A STAD 22307606 + 22307586 22307626 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGGGGACCTCTT GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGACCTCTT < 41bp 1 0.279647923038715 1 0.339181840419769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307606 chr1:22307617 nonsynonymous SNV 0.008 0 32 hm5C_associated_SNPs_38388 0 0 0 0 2 unknown 1 0.500231644037406 1 0.999536711925189 hm5C_site_37828 DeepMRMD:1;iRNA_m5C:0.999536711925189 37829 chr1 22307617 22307617 1 + G A STAD 22307612 + 22307592 22307632 41 GAGCAGGTGATCCCCATCAACTCTGGGGACCTCTTTGTGCA GAGCAGGTGATCCCCATCAACTCTGAGGACCTCTTTGTGCA < 41bp 1 0.47690686614178 1 0.680661976337433 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307612 chr1:22307617 nonsynonymous SNV 0.008 0 26 hm5C_associated_SNPs_38389 0 0 0 0 2 unknown 1 0.500231648539351 0.638676047325134 0.999536702921299 hm5C_site_37829 DeepMRMD:0.638676047325134;iRNA_m5C:0.999536702921299 37830 chr1 22307617 22307617 1 + G A STAD 22307621 + 22307601 22307641 41 ATCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTG ATCCCCATCAACTCTGAGGACCTCTTTGTGCATCCACTCTG < 41bp 1 0.0632979551259205 1 0.0221139788627625 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307621 chr1:22307617 nonsynonymous SNV 0.008 0 17 hm5C_associated_SNPs_38391 0 0 0 0 2 unknown 1 0.500231643991222 1 0.999536712017557 hm5C_site_37830 DeepMRMD:1;iRNA_m5C:0.999536712017557 37831 chr1 22307617 22307617 1 + G A STAD 22307622 + 22307602 22307642 41 TCCCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGG TCCCCATCAACTCTGAGGACCTCTTTGTGCATCCACTCTGG < 41bp 1 0.102243226170206 1 0.115247964859009 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307622 chr1:22307617 nonsynonymous SNV 0.008 0 16 hm5C_associated_SNPs_38392 0 0 0 0 2 unknown 1 0.50023164382337 1 0.99953671235326 hm5C_site_37831 DeepMRMD:1;iRNA_m5C:0.99953671235326 37832 chr1 22307617 22307617 1 + G A STAD 22307624 + 22307604 22307644 41 CCCATCAACTCTGGGGACCTCTTTGTGCATCCACTCTGGAA CCCATCAACTCTGAGGACCTCTTTGTGCATCCACTCTGGAA < 41bp 1 0.144687142435496 1 0.0617555975914001 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307624 chr1:22307617 nonsynonymous SNV 0.008 0 14 hm5C_associated_SNPs_38393 0 0 0 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_37832 DeepMRMD:1;iRNA_m5C:0.999536712157815 37833 chr1 22307617 22307617 1 + G A STAD 22307631 + 22307611 22307651 41 ACTCTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGAGGACCTCTTTGTGCATCCACTCTGGAACCGCTCG < 41bp 1 0.120628534696818 1 0.314641177654266 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307631 chr1:22307617 nonsynonymous SNV 0.008 0 7 hm5C_associated_SNPs_38394 0 0 0 0 2 unknown 1 0.500231844051052 1 0.999536311897895 hm5C_site_37833 DeepMRMD:1;iRNA_m5C:0.999536311897895 37834 chr1 22307617 22307617 1 + G A STAD 22307634 + 22307614 22307654 41 CTGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGAGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGT < 41bp 1 0.122376984476869 1 0.0625671744346619 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307634 chr1:22307617 nonsynonymous SNV 0.008 0 4 hm5C_associated_SNPs_38395 0 0 0 0 2 unknown 1 0.500231643921091 1 0.999536712157819 hm5C_site_37834 DeepMRMD:1;iRNA_m5C:0.999536712157819 37835 chr1 22307617 22307617 1 + G A STAD 22307635 + 22307615 22307655 41 TGGGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGAGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTG < 41bp 1 0.131793549811621 1 0.051992267370224 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307635 chr1:22307617 nonsynonymous SNV 0.008 0 3 hm5C_associated_SNPs_38396 0 0 0 0 2 unknown 1 0.500230508706246 1 0.999538982587509 hm5C_site_37835 DeepMRMD:1;iRNA_m5C:0.999538982587509 37836 chr1 22307617 22307617 1 + G A STAD 22307637 + 22307617 22307657 41 GGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG AGGACCTCTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG < 41bp 1 0.26467856728377 1 0.0899119675159454 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307637 chr1:22307617 nonsynonymous SNV 0.008 0 1 hm5C_associated_SNPs_38397 0 0 0 0 2 unknown 1 0.500229418144716 1 0.999541163710568 hm5C_site_37836 DeepMRMD:1;iRNA_m5C:0.999541163710568 37837 chr21 17250145 17250145 1 + G A STAD 17250131 + 17250111 17250151 41 TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCAAATCTG < 41bp 1 0.479172747891236 1 0.437711954116821 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP25 ENSG00000155313 CDS Human protein_coding chr21:17250131 chr21:17250145 nonsynonymous SNV 0.992 2 35 hm5C_associated_SNPs_38398 0 0 1 0 1 Cytosol 1 0.500219324187907 1 0.999561351624187 hm5C_site_37837 DeepMRMD:1;iRNA_m5C:0.999561351624187 37838 chr11 65978630 65978630 1 + C T STAD 65978631 + 65978611 65978651 41 CATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT CATTTCCTTAAGCGAGATGTCAACAAGCTGCAGATCATGCT < 41bp 1 0.361375329922813 1 0.532347559928894 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978631 chr11:65978630 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_38399 0 0 1 0 1 Cytosol 1 0.500231634529664 0.935304880142212 0.999536730940673 hm5C_site_37838 DeepMRMD:0.935304880142212;iRNA_m5C:0.999536730940673 37839 chr11 65978630 65978630 1 + C T STAD 65978638 + 65978618 65978658 41 TTAAGCGAGATGCCAACAAGCTGCAGATCATGCTGCAAAGG TTAAGCGAGATGTCAACAAGCTGCAGATCATGCTGCAAAGG < 41bp 1 0.602911933298718 1 0.163117825984955 experiment 0.794176133402565 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978638 chr11:65978630 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_38400 0 0 1 0 1 Cytosol 1 0.500231645206945 1 0.999536709586109 hm5C_site_37839 DeepMRMD:1;iRNA_m5C:0.999536709586109 37840 chr6 99283478 99283478 1 + G A STAD 99283470 + 99283450 99283490 41 ACCCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGT ACCCACACCAGCAGCCGCCGCCCCCGCCACCCCCGCAGGGT < 41bp 1 0.249547703321412 1 0.210413634777069 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283470 chr6:99283478 synonymous SNV . 0 29 hm5C_associated_SNPs_38401 0 0 0 0 0 exosome 1 0.50023164411557 1 0.99953671176886 hm5C_site_37840 DeepMRMD:1;iRNA_m5C:0.99953671176886 37841 chr6 99283478 99283478 1 + G A STAD 99283471 + 99283451 99283491 41 CCCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTC CCCACACCAGCAGCCGCCGCCCCCGCCACCCCCGCAGGGTC < 41bp 1 0.439798765747222 1 0.456351548433304 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283471 chr6:99283478 synonymous SNV . 0 28 hm5C_associated_SNPs_38402 0 0 0 0 0 exosome 1 0.500231643915786 1 0.999536712168428 hm5C_site_37841 DeepMRMD:1;iRNA_m5C:0.999536712168428 37842 chr6 99283478 99283478 1 + G A STAD 99283472 + 99283452 99283492 41 CCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCC CCACACCAGCAGCCGCCGCCCCCGCCACCCCCGCAGGGTCC < 41bp 1 0.477445750207365 1 0.45737811923027 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283472 chr6:99283478 synonymous SNV . 0 27 hm5C_associated_SNPs_38403 0 0 0 0 0 exosome 1 0.500231623345883 1 0.999536753308233 hm5C_site_37842 DeepMRMD:1;iRNA_m5C:0.999536753308233 37843 chr6 99283478 99283478 1 + G A STAD 99283473 + 99283453 99283493 41 CACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCG CACACCAGCAGCCGCCGCCCCCGCCACCCCCGCAGGGTCCG < 41bp 1 0.323019115338194 1 0.222448498010635 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283473 chr6:99283478 synonymous SNV . 0 26 hm5C_associated_SNPs_38404 0 0 0 0 0 exosome 1 0.500231643918439 1 0.999536712163123 hm5C_site_37843 DeepMRMD:1;iRNA_m5C:0.999536712163123 37844 chr6 99283478 99283478 1 + G A STAD 99283476 + 99283456 99283496 41 ACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCGCCT ACCAGCAGCCGCCGCCCCCGCCACCCCCGCAGGGTCCGCCT < 41bp 1 0.35840623130518 1 0.384072810411453 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283476 chr6:99283478 synonymous SNV . 0 23 hm5C_associated_SNPs_38405 0 0 0 0 0 exosome 1 0.500231662532577 1 0.999536674934845 hm5C_site_37844 DeepMRMD:1;iRNA_m5C:0.999536674934845 37845 chr6 99283478 99283478 1 + G A STAD 99283477 + 99283457 99283497 41 CCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCGCCTG CCAGCAGCCGCCGCCCCCGCCACCCCCGCAGGGTCCGCCTG < 41bp 1 0.553189920057408 1 0.371094286441803 experiment 0.893620159885183 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283477 chr6:99283478 synonymous SNV . 0 22 hm5C_associated_SNPs_38406 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37845 DeepMRMD:1;iRNA_m5C:0.999536712157815 37846 chr4 126337721 126337721 1 + G A STAD 126337729 + 126337709 126337749 41 GAGTAACACAGAGTCTGGATCGGGAAACAAAAGAGCGCTTT GAGTAACACAGAATCTGGATCGGGAAACAAAAGAGCGCTTT < 41bp 1 0.562870771625769 1 0.938445806503296 experiment 0.874258456748462 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126337729 chr4:126337721 nonsynonymous SNV 0.936 0 13 hm5C_associated_SNPs_38407 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643929639 0.123108386993408 0.999536712140722 hm5C_site_37846 DeepMRMD:0.123108386993408;iRNA_m5C:0.999536712140722 37847 chr2 39008775 39008775 1 + T G STAD 39008755 + 39008735 39008775 41 GAAACTATGAATGAAGGGGACCATAGAGTGAGGGAGAAGCT GAAACTATGAATGAAGGGGACCATAGAGTGAGGGAGAAGCG < 41bp 1 0.256695648408611 1 0.0850294232368469 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008755 chr2:39008775 nonsynonymous SNV 0.985 4 41 hm5C_associated_SNPs_38408 0 0 1 0 0 Ribosome 1 0.50023556722323 1 0.99952886555354 hm5C_site_37847 DeepMRMD:1;iRNA_m5C:0.99952886555354 37848 chr19 54965770 54965770 1 + G A STAD 54965774 + 54965754 54965794 41 CACAGCACAGCCAGGCGGGGCCCGCCACGGGCCAGGCCTAT CACAGCACAGCCAGGCAGGGCCCGCCACGGGCCAGGCCTAT < 41bp 1 0.0834551017130486 1 0.371451795101166 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54965774 chr19:54965770 synonymous SNV . 0 17 hm5C_associated_SNPs_38409 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37848 DeepMRMD:1;iRNA_m5C:0.999536712157815 37849 chr19 54965770 54965770 1 + G A STAD 54965775 + 54965755 54965795 41 ACAGCACAGCCAGGCGGGGCCCGCCACGGGCCAGGCCTATG ACAGCACAGCCAGGCAGGGCCCGCCACGGGCCAGGCCTATG < 41bp 1 0.112065145629582 1 0.102402329444885 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54965775 chr19:54965770 synonymous SNV . 0 16 hm5C_associated_SNPs_38410 0 0 0 0 0 chromatin 1 0.500231655525258 1 0.999536688949484 hm5C_site_37849 DeepMRMD:1;iRNA_m5C:0.999536688949484 37850 chr6 158900925 158900925 1 + G A STAD 158900920 + 158900900 158900940 41 CAGCAGGCCATCGCCAGCACCTTGCGTGAGGACAAGGACGT CAGCAGGCCATCGCCAGCACCTTGCATGAGGACAAGGACGT < 41bp 1 0.143299837684267 1 0.249246686697006 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158900920 chr6:158900925 nonsynonymous SNV 0.928 0 26 hm5C_associated_SNPs_38412 0 0 1 0 1 Ribosome 1 0.500466997068799 1 0.999066005862402 hm5C_site_37850 DeepMRMD:1;iRNA_m5C:0.999066005862402 37851 chr1 27088709 27088709 1 + C T STAD 27088714 + 27088694 27088734 41 GCTCAGCCTTATCTCCGCGTCAGCCTTCCGGAGGACAGATA GCTCAGCCTTATCTCTGCGTCAGCCTTCCGGAGGACAGATA < 41bp 1 0.247857506968231 1 0.15415957570076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27088714 chr1:27088709 nonsynonymous SNV 0.998 2 16 hm5C_associated_SNPs_38413 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37851 DeepMRMD:1;iRNA_m5C:0.999536712157815 37852 chr3 172052826 172052826 1 + G A STAD 172052840 + 172052820 172052860 41 CAGACCGCTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA CAGACCACTTGTCAAAGGCCCAGTTACATCTCATGGCTTTA < 41bp 1 0.0673304696045501 1 0.0439218878746033 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172052840 chr3:172052826 synonymous SNV . 0 7 hm5C_associated_SNPs_38414 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_37852 DeepMRMD:1;iRNA_m5C:0.999536712157816 37853 chr6 74502433 74502433 1 + T G STAD 74502417 + 74502397 74502437 41 TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTTTGCT TGCCTTATGGCTGTGGTGAACAGAACATGATAAATTGTGCT < 41bp 1 0.411899604217314 1 0.49592587351799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74502417 chr6:74502433 nonsynonymous SNV 0.815 4 37 hm5C_associated_SNPs_38416 0 0 0 0 2 Ribosome 1 0.500231371489289 1 0.999537257021423 hm5C_site_37853 DeepMRMD:1;iRNA_m5C:0.999537257021423 37854 chr17 48153038 48153038 1 + T G STAD 48153033 + 48153013 48153053 41 CGCTTTGCCGGCAGTGAGTCCGCTGTCTTCCACGGCTTCTT CGCTTTGCCGGCAGTGAGTCCGCTGGCTTCCACGGCTTCTT < 41bp 1 0.36313261829989 1 0.46764349937439 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153033 chr17:48153038 nonsynonymous SNV 0.892 0 26 hm5C_associated_SNPs_38417 0 0 0 0 2 Cytosol 1 0.500231500370131 1 0.999536999259737 hm5C_site_37854 DeepMRMD:1;iRNA_m5C:0.999536999259737 37855 chr1 117626657 117626657 1 + T C STAD 117626677 + 117626657 117626697 41 TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA CCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA < 41bp 1 0.142033961834732 1 0.103403776884079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117626677 chr1:117626657 nonsynonymous SNV 0.444 4 1 hm5C_associated_SNPs_38418 0 0 1 0 1 Nucleus 1 0.500231643920508 1 0.999536712158984 hm5C_site_37855 DeepMRMD:1;iRNA_m5C:0.999536712158984 37856 chr11 67818098 67818098 1 + T G STAD 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACGCTCAGCCTTCCTGCACGCCCTGCGGC < 41bp 1 0.037421153767548 1 0.213667929172516 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818098 nonsynonymous SNV 0.998 5 15 hm5C_associated_SNPs_38420 0 0 1 0 1 Nucleus 1 0.500231643921107 1 0.999536712157786 hm5C_site_37856 DeepMRMD:1;iRNA_m5C:0.999536712157786 37857 chr11 67818098 67818098 1 + T G STAD 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACGCTCAGCCTTCCTGCACGCCCTGCGGCT < 41bp 1 0.172127955067236 1 0.442100465297699 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818098 nonsynonymous SNV 0.998 5 14 hm5C_associated_SNPs_38421 0 0 1 0 1 Nucleus 1 0.50023164388236 1 0.999536712235281 hm5C_site_37857 DeepMRMD:1;iRNA_m5C:0.999536712235281 37858 chr9 129458217 129458217 1 + G A STAD 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGCCCCTACGGCAACAGCGACCCCTTCCAGCAGGG < 41bp 1 0.59785523476627 1 0.489374250173569 experiment 0.804289530467459 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458217 nonsynonymous SNV 0.982 1 20 hm5C_associated_SNPs_38422 0 0 0 0 3 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_37858 DeepMRMD:1;iRNA_m5C:0.999536712157815 37859 chr1 78001620 78001620 1 + C A STAD 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCCAAAGGAGCCGGAGCAGCCTGCATGTGGACGACAC < 41bp 1 0.410128398268506 1 0.272564440965652 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001620 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_38423 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37859 DeepMRMD:1;iRNA_m5C:0.999536712157815 37860 chr19 7682705 7682705 1 + C T STAD 7682691 + 7682671 7682711 41 ATCCTCTTTCGCGACTCGAGCTGCCAGTTCCGGGCGCTCTA ATCCTCTTTCGCGACTCGAGCTGCCAGTTCCGGGTGCTCTA < 41bp 1 0.23061150413932 1 0.0546637773513794 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682691 chr19:7682705 nonsynonymous SNV 0.952 4 35 hm5C_associated_SNPs_38424 0 0 0 0 1 nucleus 1 0.500231643921823 1 0.999536712156355 hm5C_site_37860 DeepMRMD:1;iRNA_m5C:0.999536712156355 37861 chr1 154313343 154313343 1 + C T STAD 154313339 + 154313319 154313359 41 CCCCTGTGCAGTGTGGAGGTCATCCGTCTGGGCCACAGCTA CCCCTGTGCAGTGTGGAGGTCATCTGTCTGGGCCACAGCTA < 41bp 1 0.200698676324515 1 0.0464804768562317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154313339 chr1:154313343 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_38425 0 0 1 0 0 chromatin 1 0.500231629292865 1 0.999536741414269 hm5C_site_37861 DeepMRMD:1;iRNA_m5C:0.999536741414269 37862 chr1 154313343 154313343 1 + C T STAD 154313342 + 154313322 154313362 41 CTGTGCAGTGTGGAGGTCATCCGTCTGGGCCACAGCTACTT CTGTGCAGTGTGGAGGTCATCTGTCTGGGCCACAGCTACTT < 41bp 1 0.404812182386646 1 0.0632658898830414 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154313342 chr1:154313343 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_38426 0 0 1 0 0 chromatin 1 0.500231643899274 1 0.999536712201452 hm5C_site_37862 DeepMRMD:1;iRNA_m5C:0.999536712201452 37863 chr11 66249784 66249784 1 + C T STAD 66249791 + 66249771 66249811 41 GCCTACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGGC GCCTACCACCTGTTCCGTGCCGCCTGGTACGGAGGCCTGGC < 41bp 1 0.542321369456167 1 0.305467188358307 experiment 0.915357261087665 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249791 chr11:66249784 nonsynonymous SNV 0.711 4 14 hm5C_associated_SNPs_38427 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_37863 DeepMRMD:1;iRNA_m5C:0.999536712157815 37864 chr11 66249784 66249784 1 + C T STAD 66249793 + 66249773 66249813 41 CTACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGGCTG CTACCACCTGTTCCGTGCCGCCTGGTACGGAGGCCTGGCTG < 41bp 1 0.314443505126106 1 0.150915086269379 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249793 chr11:66249784 nonsynonymous SNV 0.711 4 12 hm5C_associated_SNPs_38428 0 0 1 0 0 Nucleus 1 0.500231643921095 1 0.999536712157809 hm5C_site_37864 DeepMRMD:1;iRNA_m5C:0.999536712157809 37865 chr6 161510480 161510480 1 + G A STAD 161510492 + 161510472 161510512 41 CGGTCATCGCCAAAGCTTTGCAGCAGCTGAAGGTATTACAC CGGTCATCACCAAAGCTTTGCAGCAGCTGAAGGTATTACAC < 41bp 1 0.617028954593287 1 0.508257865905762 experiment 0.765942090813426 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161510492 chr6:161510480 nonsynonymous SNV 0.994 2 9 hm5C_associated_SNPs_38430 0 0 1 0 1 Cytosol 1 0.500229754437252 0.983484268188476 0.999540491125495 hm5C_site_37865 DeepMRMD:0.983484268188476;iRNA_m5C:0.999540491125495 37866 chr18 48604699 48604699 1 + A T STAD 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAATGGCTGGGGACCGGATTACCCAAGACAGAGCA < 41bp 1 0.495617256838193 1 0.706131458282471 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604699 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_38431 0 0 1 0 1 Cytosol 1 0.500231643921092 0.587737083435058 0.999536712157815 hm5C_site_37866 DeepMRMD:0.587737083435058;iRNA_m5C:0.999536712157815 37867 chr19 1912876 1912876 1 + G A STAD 1912858 + 1912838 1912878 41 CTGCTCCTTCGCCCCGGCCGCTGCCCCCCAGGCCGTCCGCG CTGCTCCTTCGCCCCGGCCGCTGCCCCCCAGGCCGTCCACG < 41bp 1 0.113074240133377 1 0.177579075098038 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAT3 ENSG00000213638 CDS Human protein_coding chr19:1912858 chr19:1912876 nonsynonymous SNV 0.001 1 39 hm5C_associated_SNPs_38432 0 0 1 0 0 exosome 1 0.500231643932089 1 0.999536712135822 hm5C_site_37867 DeepMRMD:1;iRNA_m5C:0.999536712135822 37868 chr3 42251455 42251455 1 + A C STAD 42251472 + 42251452 42251492 41 TCCAGTTCAGCACCCAGAGACCTCAGGTGAGAGGTCCCAAG TCCCGTTCAGCACCCAGAGACCTCAGGTGAGAGGTCCCAAG < 41bp 1 0.194649572340248 1 0.110847383737564 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42251472 chr3:42251455 synonymous SNV . 0 4 hm5C_associated_SNPs_38433 0 0 1 0 1 Cytosol 1 0.500231643923866 1 0.999536712152269 hm5C_site_37868 DeepMRMD:1;iRNA_m5C:0.999536712152269 37869 chr8 61655342 61655342 1 + G A STAD 61655344 + 61655324 61655364 41 ATCGGACAGAGGAATATGGGCCCCAGAAACATGCAGCAGTC ATCGGACAGAGGAATATGAGCCCCAGAAACATGCAGCAGTC < 41bp 1 0.425702178128817 1 0.204682290554047 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD7 ENSG00000171316 CDS Human protein_coding chr8:61655344 chr8:61655342 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_38434 0 0 1 0 0 Cytosol 1 0.500239824497949 1 0.999520351004102 hm5C_site_37869 DeepMRMD:1;iRNA_m5C:0.999520351004102 37870 chr5 14359556 14359556 1 + G A STAD 14359551 + 14359531 14359571 41 TGCAGCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTC TGCAGCAGCTGGACGAGGCGCAGTCACAGATGGAGGAGCTC < 41bp 1 0.0448603594611911 1 0.219469010829926 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359551 chr5:14359556 synonymous SNV . 0 26 hm5C_associated_SNPs_38435 0 0 1 0 2 Nucleus 1 0.500231580334121 1 0.999536839331757 hm5C_site_37870 DeepMRMD:1;iRNA_m5C:0.999536839331757 37871 chr5 14359556 14359556 1 + G A STAD 14359555 + 14359535 14359575 41 GCAGCTGGACGAGGCGCAGTCGCAGATGGAGGAGCTCTTCC GCAGCTGGACGAGGCGCAGTCACAGATGGAGGAGCTCTTCC < 41bp 1 0.550857139714109 1 0.763787150382996 experiment 0.898285720571781 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359555 chr5:14359556 synonymous SNV . 0 22 hm5C_associated_SNPs_38436 0 0 1 0 2 Nucleus 1 0.500231643921092 0.472425699234008 0.999536712157815 hm5C_site_37871 DeepMRMD:0.472425699234008;iRNA_m5C:0.999536712157815 37872 chr6 33657074 33657074 1 + G T STAD 33657075 + 33657055 33657095 41 CCTCATCTGCTTCTCCATCGCGGCCCTGTTCACCAAGCGCT CCTCATCTGCTTCTCCATCTCGGCCCTGTTCACCAAGCGCT < 41bp 1 0.276413903679729 1 0.560659468173981 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33657075 chr6:33657074 nonsynonymous SNV 0.206 2 20 hm5C_associated_SNPs_38437 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 0.878681063652038 0.999536712157814 hm5C_site_37872 DeepMRMD:0.878681063652038;iRNA_m5C:0.999536712157814 37873 chr8 145535422 145535422 1 + G A STAD 145535406 + 145535386 145535426 41 GCCCCCTCCCCAGCCTACAGCAGCTCCAGCCTCTACGCCCC GCCCCCTCCCCAGCCTACAGCAGCTCCAGCCTCTACACCCC < 41bp 1 0.333598860497662 1 0.319120466709137 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535406 chr8:145535422 nonsynonymous SNV 0.072 0 37 hm5C_associated_SNPs_38438 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_37873 DeepMRMD:1;iRNA_m5C:0.999536712157815 37874 chr3 10191562 10191562 1 + C T STAD 10191581 + 10191561 10191601 41 ACGAAGATCTGGAAGACCACCCAAATGTGCAGAAAGACCTG ATGAAGATCTGGAAGACCACCCAAATGTGCAGAAAGACCTG < 41bp 1 0.49730646114902 1 0.254731416702271 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VHL ENSG00000134086 CDS Human protein_coding chr3:10191581 chr3:10191562 synonymous SNV . 0 2 hm5C_associated_SNPs_38439 3 0 1 0 0 Ribosome 1 0.500231643956072 1 0.999536712087855 hm5C_site_37874 DeepMRMD:1;iRNA_m5C:0.999536712087855 Erythrocytosis, familial, 2 Erythrocytosis, familial, 2 37875 chr16 12662446 12662446 1 + G A STAD 12662431 + 12662411 12662451 41 TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGA TTCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCAGGAGA < 41bp 1 0.30773067551755 1 0.50423663854599 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662431 chr16:12662446 nonsynonymous SNV 0.437 2 36 hm5C_associated_SNPs_38440 0 0 0 0 1 Nucleus 1 0.500231643921086 0.99152672290802 0.999536712157828 hm5C_site_37875 DeepMRMD:0.99152672290802;iRNA_m5C:0.999536712157828 37876 chr16 12662446 12662446 1 + G A STAD 12662432 + 12662412 12662452 41 TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGAC TCCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCAGGAGAC < 41bp 1 0.332645176868786 1 0.619195640087128 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662432 chr16:12662446 nonsynonymous SNV 0.437 2 35 hm5C_associated_SNPs_38441 0 0 0 0 1 Nucleus 1 0.500231643921092 0.761608719825744 0.999536712157815 hm5C_site_37876 DeepMRMD:0.761608719825744;iRNA_m5C:0.999536712157815 37877 chr16 12662446 12662446 1 + G A STAD 12662433 + 12662413 12662453 41 CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCGGGAGACC CCCGCTTCCCCAAACTGTCCCGGGGTCAGCCCCAGGAGACC < 41bp 1 0.412619175260043 1 0.881768465042114 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662433 chr16:12662446 nonsynonymous SNV 0.437 2 34 hm5C_associated_SNPs_38442 0 0 0 0 1 Nucleus 1 0.500231643921092 0.236463069915772 0.999536712157815 hm5C_site_37877 DeepMRMD:0.236463069915772;iRNA_m5C:0.999536712157815 Multiple continuous traits in DGI samples 37878 chr16 12662446 12662446 1 + G A STAD 12662443 + 12662423 12662463 41 CAAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGG CAAACTGTCCCGGGGTCAGCCCCAGGAGACCCGCAACGTGG < 41bp 1 0.194484808613013 1 0.568984985351562 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662443 chr16:12662446 nonsynonymous SNV 0.437 2 24 hm5C_associated_SNPs_38443 0 0 0 0 1 Nucleus 1 0.500231645021468 0.862030029296876 0.999536709957064 hm5C_site_37878 DeepMRMD:0.862030029296876;iRNA_m5C:0.999536709957064 37879 chr16 12662446 12662446 1 + G A STAD 12662444 + 12662424 12662464 41 AAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGA AAACTGTCCCGGGGTCAGCCCCAGGAGACCCGCAACGTGGA < 41bp 1 0.138890541095227 1 0.678095877170563 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662444 chr16:12662446 nonsynonymous SNV 0.437 2 23 hm5C_associated_SNPs_38444 0 0 0 0 1 Nucleus 1 0.500231616918349 0.643808245658874 0.999536766163301 hm5C_site_37879 DeepMRMD:0.643808245658874;iRNA_m5C:0.999536766163301 37880 chr16 12662446 12662446 1 + G A STAD 12662445 + 12662425 12662465 41 AACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGAG AACTGTCCCGGGGTCAGCCCCAGGAGACCCGCAACGTGGAG < 41bp 1 0.63485465568082 1 0.9393470287323 experiment 0.73029068863836 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662445 chr16:12662446 nonsynonymous SNV 0.437 2 22 hm5C_associated_SNPs_38445 0 0 0 0 1 Nucleus 1 0.500231813292836 0.1213059425354 0.999536373414329 hm5C_site_37880 DeepMRMD:0.1213059425354;iRNA_m5C:0.999536373414329 37881 chr19 13930229 13930229 1 + C T STAD 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CCCATGCACACTTGTGCCCGCTACCTGTTCACCGCACTGCT < 41bp 1 0.110418098472413 1 0.0640301108360291 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930229 synonymous SNV . 0 12 hm5C_associated_SNPs_38446 0 0 0 0 2 chromatin 1 0.500231643937528 1 0.999536712124945 hm5C_site_37881 DeepMRMD:1;iRNA_m5C:0.999536712124945 37882 chr2 101622447 101622447 1 + G A STAD 101622446 + 101622426 101622466 41 TGCCATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAAT TGCCATACCGAATCCGTGTGCAGCTGTCCAGAAAACGTAAT < 41bp 1 0.576868679013188 1 0.217112123966217 experiment 0.846262641973625 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622446 chr2:101622447 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_38448 0 0 1 0 2 Cytosol 1 0.500231643961283 1 0.999536712077434 hm5C_site_37882 DeepMRMD:1;iRNA_m5C:0.999536712077434 37883 chr2 101622447 101622447 1 + G A STAD 101622449 + 101622429 101622469 41 CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAG CATACCGAATCCGTGTGCAGCTGTCCAGAAAACGTAATGAG < 41bp 1 0.224430086089566 1 0.549625992774963 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622449 chr2:101622447 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_38449 0 0 1 0 2 Cytosol 1 0.500231767316919 0.900748014450074 0.999536465366162 hm5C_site_37883 DeepMRMD:0.900748014450074;iRNA_m5C:0.999536465366162 37884 chr9 18504847 18504847 1 + C T STAD 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCTGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG < 41bp 1 0.349223636196552 1 0.534486293792725 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504847 synonymous SNV . 0 6 hm5C_associated_SNPs_38452 0 0 0 0 0 Nucleus 1 0.500231643921092 0.93102741241455 0.999536712157815 hm5C_site_37884 DeepMRMD:0.93102741241455;iRNA_m5C:0.999536712157815 37885 chr8 21958382 21958382 1 + C T STAD 21958371 + 21958351 21958391 41 ACAGAGACCTGGAGGAAGACCCCTACTTCACCGACAGCTTC ACAGAGACCTGGAGGAAGACCCCTACTTCACTGACAGCTTC < 41bp 1 0.191480782806308 1 0.0960647165775299 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21958371 chr8:21958382 synonymous SNV . 0 32 hm5C_associated_SNPs_38453 0 0 1 0 1 chromatin 1 0.500231643919609 1 0.999536712160783 hm5C_site_37885 DeepMRMD:1;iRNA_m5C:0.999536712160783 37886 chr5 64267563 64267563 1 + A G STAD 64267545 + 64267525 64267565 41 TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGAAT TTTAGAGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGGAT < 41bp 1 0.266657463304671 1 0.756618797779083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CWC27 ENSG00000153015 CDS Human protein_coding chr5:64267545 chr5:64267563 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_38454 0 0 1 0 2 Nucleus 1 0.500231643921094 0.486762404441834 0.999536712157812 hm5C_site_37886 DeepMRMD:0.486762404441834;iRNA_m5C:0.999536712157812 37887 chr1 46739833 46739833 1 + G A STAD 46739819 + 46739799 46739839 41 TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGAT TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGACACGAT < 41bp 1 0.140731666818105 1 0.151619344949722 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739819 chr1:46739833 nonsynonymous SNV 0.928 4 35 hm5C_associated_SNPs_38455 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37887 DeepMRMD:1;iRNA_m5C:0.999536712157815 37888 chr1 100480964 100480964 1 + A G STAD 100480954 + 100480934 100480974 41 TCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTC TCAGGGATATAACCGACTGACCTGGATAGTGGTTGTTCTTC < 41bp 1 0.233624832121249 1 0.0482563674449921 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC35A3 ENSG00000117620 CDS Human protein_coding chr1:100480954 chr1:100480964 synonymous SNV . 0 31 hm5C_associated_SNPs_38456 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643469982 1 0.999536713060036 hm5C_site_37888 DeepMRMD:1;iRNA_m5C:0.999536713060036 37889 chr22 40801789 40801789 1 + G A STAD 40801785 + 40801765 40801805 41 TCCAGACTGACCAGCGGGTCCTGCGCCACCTCATTGTCCAG TCCAGACTGACCAGCGGGTCCTGCACCACCTCATTGTCCAG < 41bp 1 0.680521573247556 1 0.175401329994202 experiment 0.638956853504888 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40801785 chr22:40801789 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_38457 0 0 1 0 1 Cytosol 1 0.500230389298809 1 0.999539221402382 hm5C_site_37889 DeepMRMD:1;iRNA_m5C:0.999539221402382 37890 chr19 50338287 50338287 1 + C T STAD 50338268 + 50338248 50338288 41 CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCG CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGTG < 41bp 1 0.60961544649661 1 0.772870540618896 experiment 0.78076910700678 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338268 chr19:50338287 synonymous SNV . 0 40 hm5C_associated_SNPs_38458 0 0 0 0 1 chromatin 1 0.500231643921092 0.454258918762208 0.999536712157815 hm5C_site_37890 DeepMRMD:0.454258918762208;iRNA_m5C:0.999536712157815 37891 chr5 138658622 138658622 1 + G A STAD 138658604 + 138658584 138658624 41 AAAGGAACCATCAGATAAAGCTGTGAAAAAAGATGGAAGTG AAAGGAACCATCAGATAAAGCTGTGAAAAAAGATGGAAATG < 41bp 1 0.42029937958852 1 0.0732270479202271 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MATR3 ENSG00000015479 CDS Human protein_coding chr5:138658604 chr5:138658622 nonsynonymous SNV 0.998 0 39 hm5C_associated_SNPs_38459 0 0 1 0 0 Nucleus 1 0.500231643925572 1 0.999536712148856 hm5C_site_37891 DeepMRMD:1;iRNA_m5C:0.999536712148856 37892 chr19 37853775 37853775 1 + A G STAD 37853759 + 37853739 37853779 41 CAGCGGACACACTCAGGGCTCAAGCCTTATGTGTGCAAGGA CAGCGGACACACTCAGGGCTCAAGCCTTATGTGTGCGAGGA < 41bp 1 0.341148532847554 1 0.184141784906387 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HKR1 ENSG00000181666 CDS Human protein_coding chr19:37853759 chr19:37853775 nonsynonymous SNV 0.995 0 37 hm5C_associated_SNPs_38460 0 0 1 0 0 exosome 1 0.500231643914001 1 0.999536712171998 hm5C_site_37892 DeepMRMD:1;iRNA_m5C:0.999536712171998 37893 chr11 61405001 61405001 1 + G A STAD 61404987 + 61404967 61405007 41 ATCTGCCTTTGTGGCTGCAGCCCCTGTGGCTGCTGCCACCA ATCTGCCTTTGTGGCTGCAGCCCCTGTGGCTGCTACCACCA < 41bp 1 0.310350135333719 1 0.338455319404602 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404987 chr11:61405001 . . 0 35 hm5C_associated_SNPs_38461 0 0 0 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_37893 DeepMRMD:1;iRNA_m5C:0.999536712157814 37894 chr11 61405001 61405001 1 + G A STAD 61404988 + 61404968 61405008 41 TCTGCCTTTGTGGCTGCAGCCCCTGTGGCTGCTGCCACCAC TCTGCCTTTGTGGCTGCAGCCCCTGTGGCTGCTACCACCAC < 41bp 1 0.438285951489984 1 0.28651088476181 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404988 chr11:61405001 . . 0 34 hm5C_associated_SNPs_38462 0 0 0 0 0 unknown 1 0.500231643928217 1 0.999536712143567 hm5C_site_37894 DeepMRMD:1;iRNA_m5C:0.999536712143567 37895 chr11 61405001 61405001 1 + G A STAD 61404989 + 61404969 61405009 41 CTGCCTTTGTGGCTGCAGCCCCTGTGGCTGCTGCCACCACA CTGCCTTTGTGGCTGCAGCCCCTGTGGCTGCTACCACCACA < 41bp 1 0.237163629062101 1 0.0771283209323883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404989 chr11:61405001 . . 0 33 hm5C_associated_SNPs_38463 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_37895 DeepMRMD:1;iRNA_m5C:0.999536712157815 37896 chr11 61405001 61405001 1 + G A STAD 61404990 + 61404970 61405010 41 TGCCTTTGTGGCTGCAGCCCCTGTGGCTGCTGCCACCACAG TGCCTTTGTGGCTGCAGCCCCTGTGGCTGCTACCACCACAG < 41bp 1 0.640200376671581 1 0.507600247859955 experiment 0.719599246656838 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404990 chr11:61405001 . . 0 32 hm5C_associated_SNPs_38464 0 0 0 0 0 unknown 1 0.500231643933591 0.98479950428009 0.999536712132819 hm5C_site_37896 DeepMRMD:0.98479950428009;iRNA_m5C:0.999536712132819 37897 chr17 28772976 28772976 1 + A G STAD 28772959 + 28772939 28772979 41 ATCTGGCTCTGGCTCTTTATCGATACCATTCCTACAAAGAC ATCTGGCTCTGGCTCTTTATCGATACCATTCCTACAAGGAC < 41bp 1 0.548988464376769 1 0.78743714094162 experiment 0.902023071246462 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPD ENSG00000108582 CDS Human protein_coding chr17:28772959 chr17:28772976 synonymous SNV . 0 38 hm5C_associated_SNPs_38465 0 0 1 0 1 Nucleus 1 0.50023164389323 0.42512571811676 0.999536712213541 hm5C_site_37897 DeepMRMD:0.42512571811676;iRNA_m5C:0.999536712213541 37898 chr1 228333735 228333735 1 + A G STAD 228333718 + 228333698 228333738 41 CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCACGAGGA CCCCGATGGGTGACAGGTCTCTCTGCTAGATACCACGGGGA < 41bp 1 0.603183635889855 1 0.157963037490845 experiment 0.79363272822029 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333718 chr1:228333735 nonsynonymous SNV 0.250 3 38 hm5C_associated_SNPs_38466 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643923949 1 0.999536712152101 hm5C_site_37898 DeepMRMD:1;iRNA_m5C:0.999536712152101 37899 chr1 21904089 21904089 1 + C A STAD 21904078 + 21904058 21904098 41 GCTCCTGCCAGCTCGGCAGGCAGCCTTGCTGCAGGCCCCCT GCTCCTGCCAGCTCGGCAGGCAGCCTTGCTGAAGGCCCCCT < 41bp 1 0.543529815548938 1 0.508971452713013 experiment 0.912940368902124 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALPL ENSG00000162551 CDS Human protein_coding chr1:21904078 chr1:21904089 nonsynonymous SNV 0.002 1 32 hm5C_associated_SNPs_38467 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.982057094573974 0.999536712157815 hm5C_site_37899 DeepMRMD:0.982057094573974;iRNA_m5C:0.999536712157815 37900 chr9 131847002 131847002 1 + C A STAD 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATAGTCGGTTTCGTGACCCT < 41bp 1 0.454370590059066 1 0.588920533657074 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847002 synonymous SNV . 0 24 hm5C_associated_SNPs_38468 0 0 1 0 2 Ribosome 1 0.500231643921093 0.822158932685852 0.999536712157814 hm5C_site_37900 DeepMRMD:0.822158932685852;iRNA_m5C:0.999536712157814 37901 chr12 31244682 31244682 1 + G T STAD 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATCAGATGCTGCTTCATGCGGCCACTCGGCAGGCCGCGG < 41bp 1 0.559649946924151 1 0.270456552505493 experiment 0.880700106151699 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244682 synonymous SNV . 0 16 hm5C_associated_SNPs_38469 0 0 1 0 1 Cytosol 1 0.500231645621162 1 0.999536708757676 hm5C_site_37901 DeepMRMD:1;iRNA_m5C:0.999536708757676 37902 chr12 31244682 31244682 1 + G T STAD 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTTCATGCGGCCACTCGGCAGGCCGCGGGCAT < 41bp 1 0.194383572681477 1 0.0303165018558502 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244682 synonymous SNV . 0 12 hm5C_associated_SNPs_38470 0 0 1 0 1 Cytosol 1 0.5002316439628 1 0.999536712074399 hm5C_site_37902 DeepMRMD:1;iRNA_m5C:0.999536712074399 37903 chr4 126398337 126398337 1 + T A STAD 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTAACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT < 41bp 1 0.149611842195341 1 0.83440774679184 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398337 synonymous SNV . 0 6 hm5C_associated_SNPs_38471 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643842045 0.33118450641632 0.99953671231591 hm5C_site_37903 DeepMRMD:0.33118450641632;iRNA_m5C:0.99953671231591 37904 chr16 722946 722946 1 + C A STAD 722951 + 722931 722971 41 CATTACATGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC CATTACATGGACGGGAAGACCCCCTGCCTCTTTGTCTCCTC < 41bp 1 0.395310290842991 1 0.0641034245491028 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722951 chr16:722946 nonsynonymous SNV 0.984 0 16 hm5C_associated_SNPs_38472 0 0 1 0 1 Ribosome 1 0.500231643921162 1 0.999536712157676 hm5C_site_37904 DeepMRMD:1;iRNA_m5C:0.999536712157676 37905 chr12 132546656 132546656 1 + C T STAD 132546658 + 132546638 132546678 41 CTGTTTGCCTTTTCTAGACGCCGGGAGGCTCTGCTCCCGCC CTGTTTGCCTTTTCTAGATGCCGGGAGGCTCTGCTCCCGCC < 41bp 1 0.288769079720772 1 0.882383227348328 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546658 chr12:132546656 nonsynonymous SNV 0.233 4 19 hm5C_associated_SNPs_38473 0 0 0 0 1 Cytosol 1 0.50023164392691 0.235233545303344 0.99953671214618 hm5C_site_37905 DeepMRMD:0.235233545303344;iRNA_m5C:0.99953671214618 37906 chr1 22336257 22336257 1 + T C STAD 22336262 + 22336242 22336282 41 CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG CTGGCAGGTCCACGGCGTGACCAGCTTTGTTTCTGCCTTTG < 41bp 1 0.270952816727918 1 0.0798313021659851 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336262 chr1:22336257 synonymous SNV . 0 16 hm5C_associated_SNPs_38474 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643248756 1 0.999536713502488 hm5C_site_37906 DeepMRMD:1;iRNA_m5C:0.999536713502488 37907 chr1 22336257 22336257 1 + T C STAD 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TGGCAGGTCCACGGCGTGACCAGCTTTGTTTCTGCCTTTGG < 41bp 1 0.644498445477231 1 0.295169174671173 experiment 0.711003109045539 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336257 synonymous SNV . 0 15 hm5C_associated_SNPs_38475 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643933562 1 0.999536712132877 hm5C_site_37907 DeepMRMD:1;iRNA_m5C:0.999536712132877 37908 chr1 22336257 22336257 1 + T C STAD 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCACGGCGTGACCAGCTTTGTTTCTGCCTTTGGCTG < 41bp 1 0.164285229871514 1 0.0653034448623657 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336257 synonymous SNV . 0 12 hm5C_associated_SNPs_38476 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_37908 DeepMRMD:1;iRNA_m5C:0.999536712157816 37909 chr1 22336257 22336257 1 + T C STAD 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA CGGCGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA < 41bp 1 0.573884127690038 1 0.0659344792366028 experiment 0.852231744619924 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336257 synonymous SNV . 0 4 hm5C_associated_SNPs_38477 0 0 0 0 1 Endoplasmic reticulum 1 0.5002318906595 1 0.999536218681 hm5C_site_37909 DeepMRMD:1;iRNA_m5C:0.999536218681 37910 chr1 22336257 22336257 1 + T C STAD 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT CGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT < 41bp 1 0.0449917060272343 1 0.0124619603157043 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336257 synonymous SNV . 0 1 hm5C_associated_SNPs_38478 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_37910 DeepMRMD:1;iRNA_m5C:0.999536712157815 37911 chr1 22336254 22336254 1 + C T STAD 22336262 + 22336242 22336282 41 CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG CTGGCAGGTCCATGGTGTGACCAGCTTTGTTTCTGCCTTTG < 41bp 1 0.290763890230872 1 0.0938362777233124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336262 chr1:22336254 synonymous SNV . 0 13 hm5C_associated_SNPs_38479 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643917359 1 0.999536712165283 hm5C_site_37911 DeepMRMD:1;iRNA_m5C:0.999536712165283 37912 chr1 22336254 22336254 1 + C T STAD 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TGGCAGGTCCATGGTGTGACCAGCTTTGTTTCTGCCTTTGG < 41bp 1 0.592529077798783 1 0.202183783054352 experiment 0.814941844402434 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336254 synonymous SNV . 0 12 hm5C_associated_SNPs_38480 0 0 0 0 1 Endoplasmic reticulum 1 0.500231647872449 1 0.999536704255103 hm5C_site_37912 DeepMRMD:1;iRNA_m5C:0.999536704255103 37913 chr1 22336254 22336254 1 + C T STAD 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCATGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG < 41bp 1 0.14776648241537 1 0.0616121292114258 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336254 synonymous SNV . 0 9 hm5C_associated_SNPs_38481 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921082 1 0.999536712157836 hm5C_site_37913 DeepMRMD:1;iRNA_m5C:0.999536712157836 37914 chr1 22336254 22336254 1 + C T STAD 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA TGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA < 41bp 1 0.580221207151357 1 0.0966429114341736 experiment 0.839557585697287 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336254 synonymous SNV . 0 1 hm5C_associated_SNPs_38482 0 0 0 0 1 Endoplasmic reticulum 1 0.50022963545731 1 0.99954072908538 hm5C_site_37914 DeepMRMD:1;iRNA_m5C:0.99954072908538 37915 chrX 73047029 73047029 1 + A G STAD 73047047 - 73047027 73047067 41 TCAGAGCAAGCATTGTGGAGCGGTTCCTTATGCCAGGCTGC TCAGAGCAAGCATTGTGGAGCGGTTCCTTATGCCAGGCCGC < 41bp 1 0.116515373250433 1 0.117410093545914 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047047 chrX:73047029 . . 0 39 hm5C_associated_SNPs_38483 0 0 1 0 0 unknown 1 0.500231643916982 1 0.999536712166035 hm5C_site_37915 DeepMRMD:1;iRNA_m5C:0.999536712166035 37916 chr6 28329219 28329219 1 + C A STAD 28329230 + 28329210 28329250 41 AGCATGAATCTGTGGGATCCCAGCCTTTACAAGATAGAGGT AGCATGAATATGTGGGATCCCAGCCTTTACAAGATAGAGGT < 41bp 1 0.469544814929815 1 0.370745182037354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28329230 chr6:28329219 nonsynonymous SNV 0.716 2 10 hm5C_associated_SNPs_38484 0 0 1 0 1 exosome 1 0.500231643889625 1 0.99953671222075 hm5C_site_37916 DeepMRMD:1;iRNA_m5C:0.99953671222075 37917 chr6 26598840 26598840 1 + C T STAD 26598851 + 26598831 26598871 41 CTCAGAGAGCATGGAGGGACCTTCCCTTGTCAGGGACTCCT CTCAGAGAGTATGGAGGGACCTTCCCTTGTCAGGGACTCCT < 41bp 1 0.296892655020194 1 0.0416096448898315 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABT1 ENSG00000146109 CDS Human protein_coding chr6:26598851 chr6:26598840 synonymous SNV . 0 10 hm5C_associated_SNPs_38485 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_37917 DeepMRMD:1;iRNA_m5C:0.999536712157814 37918 chr5 149754318 149754318 1 + G A STAD 149754323 + 149754303 149754343 41 GCGGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGA GCGGGGAAGCGGGAGAAGGACTCGCAGAGCAGCAGCGAGGA < 41bp 1 0.571417169566566 1 0.310339391231537 experiment 0.857165660866869 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754323 chr5:149754318 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_38486 0 0 1 0 1 Nucleus 1 0.500231643933936 1 0.999536712132129 hm5C_site_37918 DeepMRMD:1;iRNA_m5C:0.999536712132129 37919 chr5 149754318 149754318 1 + G A STAD 149754325 + 149754305 149754345 41 GGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGAAT GGGGAAGCGGGAGAAGGACTCGCAGAGCAGCAGCGAGGAAT < 41bp 1 0.644720881699992 1 0.507859885692596 experiment 0.710558236600016 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754325 chr5:149754318 nonsynonymous SNV 0.001 0 14 hm5C_associated_SNPs_38487 0 0 1 0 1 Nucleus 1 0.500231643923236 0.984280228614808 0.999536712153528 hm5C_site_37919 DeepMRMD:0.984280228614808;iRNA_m5C:0.999536712153528 37920 chr5 149754318 149754318 1 + G A STAD 149754335 + 149754315 149754355 41 GAGGAGGACTCGCAGAGCAGCAGCGAGGAATCGGACAGTGA GAGAAGGACTCGCAGAGCAGCAGCGAGGAATCGGACAGTGA < 41bp 1 0.519460183543047 1 0.272040516138077 experiment 0.961079632913906 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754335 chr5:149754318 nonsynonymous SNV 0.001 0 4 hm5C_associated_SNPs_38488 0 0 1 0 1 Nucleus 1 0.500231443333764 1 0.999537113332472 hm5C_site_37920 DeepMRMD:1;iRNA_m5C:0.999537113332472 37921 chr3 47361166 47361166 1 + C T STAD 47361152 + 47361132 47361172 41 TTTGCCCACAGATTGGGGACCACAAATTCAGTGCCCACCGG TTTGCCCACAGATTGGGGACCACAAATTCAGTGCTCACCGG < 41bp 1 0.524321146724067 1 0.327611416578293 experiment 0.951357706551865 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47361152 chr3:47361166 synonymous SNV . 0 35 hm5C_associated_SNPs_38489 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37921 DeepMRMD:1;iRNA_m5C:0.999536712157815 37922 chr5 10254907 10254907 1 + G C STAD 10254899 + 10254879 10254919 41 TTGCCAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGAT TTGCCAAGCTGATGGTGGAACTGTCCAACTCTCAGGATGAT < 41bp 1 0.130287275471439 1 0.0695640444755554 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753;ENSG00000150753 exonic;splicing Human other chr5:10254899 chr5:10254907 nonsynonymous SNV 0.999 2 29 hm5C_associated_SNPs_38490 0 0 1 0 1 Cytosol 1 0.500231059100669 1 0.999537881798662 hm5C_site_37922 DeepMRMD:1;iRNA_m5C:0.999537881798662 37923 chr5 10254907 10254907 1 + G C STAD 10254903 + 10254883 10254923 41 CAAGCTGATGGTGGAACTGTCCAAGTCTCAGGATGATGAAA CAAGCTGATGGTGGAACTGTCCAACTCTCAGGATGATGAAA < 41bp 1 0.0946621568719132 1 0.0474712252616882 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753;ENSG00000150753 exonic;splicing Human other chr5:10254903 chr5:10254907 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_38491 0 0 1 0 1 Cytosol 1 0.500231525891222 1 0.999536948217556 hm5C_site_37923 DeepMRMD:1;iRNA_m5C:0.999536948217556 37924 chr5 10254907 10254907 1 + G C STAD 10254909 + 10254889 10254929 41 GATGGTGGAACTGTCCAAGTCTCAGGATGATGAAATTGGAG GATGGTGGAACTGTCCAACTCTCAGGATGATGAAATTGGAG < 41bp 1 0.628135977588872 1 0.34593066573143 experiment 0.743728044822256 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCT5 ENSG00000150753;ENSG00000150753 exonic;splicing Human other chr5:10254909 chr5:10254907 nonsynonymous SNV 0.999 2 19 hm5C_associated_SNPs_38492 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37924 DeepMRMD:1;iRNA_m5C:0.999536712157815 37925 chr2 102441785 102441785 1 + T G STAD 102441795 + 102441775 102441815 41 CTATAGCTTGTTATGGAGTTCTGTGGGGCTGGGTCCATTAC CTATAGCTTGGTATGGAGTTCTGTGGGGCTGGGTCCATTAC < 41bp 1 0.389825702674463 1 0.143114805221558 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102441795 chr2:102441785 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_38493 0 0 1 0 0 Ribosome 1 0.50023164445235 1 0.999536711095301 hm5C_site_37925 DeepMRMD:1;iRNA_m5C:0.999536711095301 37926 chr1 214819436 214819436 1 + C A STAD 214819453 + 214819433 214819473 41 ATTCTTGATGCCGAGAATTCCAAAGCAGAAGTAGAGACTCT ATTATTGATGCCGAGAATTCCAAAGCAGAAGTAGAGACTCT < 41bp 1 0.261715008616237 1 0.633350729942322 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214819453 chr1:214819436 nonsynonymous SNV 0.999 2 4 hm5C_associated_SNPs_38494 0 0 1 0 0 Nucleus 1 0.500231661661378 0.733298540115356 0.999536676677244 hm5C_site_37926 DeepMRMD:0.733298540115356;iRNA_m5C:0.999536676677244 37927 chr20 35857032 35857032 1 + A C STAD 35857050 + 35857030 35857070 41 CAAGTTTGAACTGGATACCTCTGAAAGAAAGATTGAATTTG CACGTTTGAACTGGATACCTCTGAAAGAAAGATTGAATTTG < 41bp 1 0.604397333812745 1 0.39544203877449 experiment 0.791205332374511 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35857050 chr20:35857032 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_38496 0 0 1 0 1 Ribosome 1 0.500231641083386 1 0.999536717833228 hm5C_site_37927 DeepMRMD:1;iRNA_m5C:0.999536717833228 37928 chr16 23578341 23578341 1 + A C STAD 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAACAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC < 41bp 1 0.0724021704920738 1 0.0829088389873505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578341 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_38497 0 0 1 0 2 Ribosome 1 0.500231644524166 1 0.999536710951668 hm5C_site_37928 DeepMRMD:1;iRNA_m5C:0.999536710951668 37929 chr1 70700393 70700393 1 + A G STAD 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CGCTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT < 41bp 1 0.322363253738931 1 0.126441150903702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700393 synonymous SNV . 0 2 hm5C_associated_SNPs_38498 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37929 DeepMRMD:1;iRNA_m5C:0.999536712157815 37930 chr1 7796536 7796536 1 + A C STAD 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCCGCGGAATGCCCCTACTCCACCTGGCCGCTGCCCAGGG < 41bp 1 0.309839056754553 1 0.388527274131775 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796536 nonsynonymous SNV 0.990 4 13 hm5C_associated_SNPs_38499 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37930 DeepMRMD:1;iRNA_m5C:0.999536712157815 37931 chr4 79437061 79437061 1 + T C STAD 79437053 + 79437033 79437073 41 AGCGTGCGAGAGCCGAAGACCATCCAGCTCTACAAACACCT AGCGTGCGAGAGCCGAAGACCATCCAGCCCTACAAACACCT < 41bp 1 0.0555501130460932 1 0.393047630786896 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79437053 chr4:79437061 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_38500 0 0 1 0 0 Nucleus 1 0.500231382093958 1 0.999537235812085 hm5C_site_37931 DeepMRMD:1;iRNA_m5C:0.999537235812085 37932 chr15 43484948 43484948 1 + G T STAD 43484957 + 43484937 43484977 41 TTAGTGTGGATGATTTGGCTCTGAGCATATATCCACCTATG TTAGTGTGGATTATTTGGCTCTGAGCATATATCCACCTATG < 41bp 1 0.537151074996925 1 0.126489460468292 experiment 0.925697850006149 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCNDBP1 ENSG00000166946 CDS Human protein_coding chr15:43484957 chr15:43484948 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_38501 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37932 DeepMRMD:1;iRNA_m5C:0.999536712157815 37933 chr1 22816605 22816605 1 + A C STAD 22816595 + 22816575 22816615 41 CCAGCCTCCTGTTCAAAACCCTGCTGGATAACACAGATACC CCAGCCTCCTGTTCAAAACCCTGCTGGATACCACAGATACC < 41bp 1 0.24066050497603 1 0.300942420959473 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22816595 chr1:22816605 nonsynonymous SNV 0.987 0 31 hm5C_associated_SNPs_38502 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_37933 DeepMRMD:1;iRNA_m5C:0.999536712157815 37934 chr11 46724676 46724676 1 + A T STAD 46724672 + 46724652 46724692 41 CCCCAGCCTTCCTCTGAGGGCCCAAGTCTCACCCAGCCTGG CCCCAGCCTTCCTCTGAGGGCCCATGTCTCACCCAGCCTGG < 41bp 1 0.208137075409544 1 0.0345295667648315 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46724672 chr11:46724676 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_38503 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37934 DeepMRMD:1;iRNA_m5C:0.999536712157815 37935 chr2 27663749 27663749 1 + T C STAD 27663756 + 27663736 27663776 41 GTGACATCACCTGTCGTGCCCCCCTCTGTCAAGACTCCGAC GTGACATCACCTGCCGTGCCCCCCTCTGTCAAGACTCCGAC < 41bp 1 0.247355111475124 1 0.0127202272415161 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663756 chr2:27663749 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_38504 0 0 0 0 2 Cytosol 1 0.500231643941394 1 0.999536712117213 hm5C_site_37935 DeepMRMD:1;iRNA_m5C:0.999536712117213 37936 chr10 60037071 60037071 1 + A G STAD 60037076 + 60037056 60037096 41 TACTGCCGTTGTTGGAGGTCCAAAAAGGTGAGGAAAGCAAT TACTGCCGTTGTTGGGGGTCCAAAAAGGTGAGGAAAGCAAT < 41bp 1 0.60684337035211 1 0.408981829881668 experiment 0.786313259295779 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CISD1 ENSG00000122873 CDS Human protein_coding chr10:60037076 chr10:60037071 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_38505 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37936 DeepMRMD:1;iRNA_m5C:0.999536712157815 37937 chr12 71977612 71977612 1 + G A STAD 71977616 + 71977596 71977636 41 GAACATGCTCACGGGAGTCTCCAGTGCCGTGCTGGCTGGTG GAACATGCTCACGGGAATCTCCAGTGCCGTGCTGGCTGGTG < 41bp 1 0.455299447558409 1 0.664390444755554 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LGR5 ENSG00000139292 CDS Human protein_coding chr12:71977616 chr12:71977612 nonsynonymous SNV 0.002 1 17 hm5C_associated_SNPs_38506 0 0 1 0 1 Nucleus 1 0.50023164340967 0.671219110488892 0.999536713180659 hm5C_site_37937 DeepMRMD:0.671219110488892;iRNA_m5C:0.999536713180659 37938 chr20 36149740 36149740 1 + G A STAD 36149743 - 36149723 36149763 41 TTCAGCCGAGGCCGCCGCCACTGCCGCCATGGTTCCAAGAA TTCAGCCGAGGCCGCCGCCACTGTCGCCATGGTTCCAAGAA < 41bp 1 0.26393677171855 1 0.152227014303207 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human protein_coding chr20:36149743 chr20:36149740 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_38507 0 0 1 0 1 exosome 1 0.500231219788665 1 0.999537560422669 hm5C_site_37938 DeepMRMD:1;iRNA_m5C:0.999537560422669 37939 chr20 36149740 36149740 1 + G A STAD 36149745 - 36149725 36149765 41 AGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGTTCCAAG AGTTCAGCCGAGGCCGCCGCCACTGTCGCCATGGTTCCAAG < 41bp 1 0.501976554931873 1 0.415088057518005 experiment 0.996046890136254 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human protein_coding chr20:36149745 chr20:36149740 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_38508 0 0 1 0 1 exosome 1 0.500123048882097 1 0.999753902235806 hm5C_site_37939 DeepMRMD:1;iRNA_m5C:0.999753902235806 37940 chr20 36149740 36149740 1 + G A STAD 36149746 - 36149726 36149766 41 CAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGTTCCAA CAGTTCAGCCGAGGCCGCCGCCACTGTCGCCATGGTTCCAA < 41bp 1 0.2813530620623 1 0.0954544842243195 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human protein_coding chr20:36149746 chr20:36149740 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_38509 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37940 DeepMRMD:1;iRNA_m5C:0.999536712157815 37941 chr20 36149740 36149740 1 + G A STAD 36149748 - 36149728 36149768 41 AGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGTTCC AGCAGTTCAGCCGAGGCCGCCGCCACTGTCGCCATGGTTCC < 41bp 1 0.594470526607304 1 0.25243067741394 experiment 0.811058946785392 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human protein_coding chr20:36149748 chr20:36149740 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_38510 0 0 1 0 1 exosome 1 0.500231643921102 1 0.999536712157797 hm5C_site_37941 DeepMRMD:1;iRNA_m5C:0.999536712157797 37942 chr20 36149740 36149740 1 + G A STAD 36149751 - 36149731 36149771 41 ATGAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGGT ATGAGCAGTTCAGCCGAGGCCGCCGCCACTGTCGCCATGGT < 41bp 1 0.578018626380225 1 0.474822461605072 experiment 0.84396274723955 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human protein_coding chr20:36149751 chr20:36149740 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_38511 0 0 1 0 1 exosome 1 0.500231836600714 1 0.999536326798572 hm5C_site_37942 DeepMRMD:1;iRNA_m5C:0.999536326798572 37943 chr20 36149740 36149740 1 + G A STAD 36149752 - 36149732 36149772 41 GATGAGCAGTTCAGCCGAGGCCGCCGCCACTGCCGCCATGG GATGAGCAGTTCAGCCGAGGCCGCCGCCACTGTCGCCATGG < 41bp 1 0.280031402830048 1 0.15801864862442 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NNAT ENSG00000053438 CDS Human protein_coding chr20:36149752 chr20:36149740 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_38512 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37943 DeepMRMD:1;iRNA_m5C:0.999536712157815 37944 chr1 163310207 163310207 1 + C T STAD 163310211 + 163310191 163310231 41 ATATTTCAGAGAAAACCAAGCGTTTGGTAAACATCTTTTCT ATATTTCAGAGAAAACTAAGCGTTTGGTAAACATCTTTTCT < 41bp 1 0.0755122088253794 1 0.0872383117675781 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163310211 chr1:163310207 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_38513 0 0 1 0 2 Cytosol 1 0.500231661017044 1 0.999536677965911 hm5C_site_37944 DeepMRMD:1;iRNA_m5C:0.999536677965911 37945 chr1 11894557 11894557 1 + G A STAD 11894546 + 11894526 11894566 41 TGCTTTGTGTTTCAGGTGGCCAAATGGACAGGGGACTTTTT TGCTTTGTGTTTCAGGTGGCCAAATGGACAGAGGACTTTTT < 41bp 1 0.101594801725671 1 0.805831372737885 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11894546 chr1:11894557 nonsynonymous SNV 0.976 5 32 hm5C_associated_SNPs_38514 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643916258 0.38833725452423 0.999536712167484 hm5C_site_37945 DeepMRMD:0.38833725452423;iRNA_m5C:0.999536712167484 37946 chr17 80529613 80529613 1 + C T STAD 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG TGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG < 41bp 1 0.0862406688951919 1 0.0618610680103302 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529613 nonsynonymous SNV 0.952 5 1 hm5C_associated_SNPs_38515 0 0 1 0 1 Cytosol 1 0.500231600454754 1 0.999536799090492 hm5C_site_37946 DeepMRMD:1;iRNA_m5C:0.999536799090492 37947 chr22 29695771 29695771 1 + C G STAD 29695781 + 29695761 29695801 41 CCCTGGGGGGCCCCCTGGACCTTTGATGGAACAGATGGGAG CCCTGGGGGGGCCCCTGGACCTTTGATGGAACAGATGGGAG < 41bp 1 0.457867017759768 1 0.364406079053879 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695781 chr22:29695771 nonsynonymous SNV 0.985 2 11 hm5C_associated_SNPs_38516 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37947 DeepMRMD:1;iRNA_m5C:0.999536712157815 37948 chr2 133402818 133402818 1 + A G STAD 133402834 + 133402814 133402854 41 TTCTACCTCAGCTCGGTCATCAACCCGCTCCTGTACACGGT TTCTGCCTCAGCTCGGTCATCAACCCGCTCCTGTACACGGT < 41bp 1 0.176805351186415 1 0.1543850004673 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR39 ENSG00000183840 CDS Human protein_coding chr2:133402834 chr2:133402818 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_38517 0 0 0 0 0 nucleus 1 0.500231643922254 1 0.999536712155492 hm5C_site_37948 DeepMRMD:1;iRNA_m5C:0.999536712155492 37949 chr19 41265406 41265406 1 + G A STAD 41265404 + 41265384 41265424 41 GGCACCTTCGTGGAGCGGGACCGCAAGCGGGAGAAGAGGAA GGCACCTTCGTGGAGCGGGACCACAAGCGGGAGAAGAGGAA < 41bp 1 0.296243477709406 1 0.0601604282855988 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRPA ENSG00000077312 CDS Human protein_coding chr19:41265404 chr19:41265406 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_38518 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37949 DeepMRMD:1;iRNA_m5C:0.999536712157815 37950 chr7 18630000 18630000 1 + C A STAD 18629992 + 18629972 18630012 41 TTCTAGCCATAAAACAGCAACAAGAACTCCTAGAAAAGGAG TTCTAGCCATAAAACAGCAACAAGAACTACTAGAAAAGGAG < 41bp 1 0.385631223629193 1 0.73090124130249 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HDAC9 ENSG00000048052 CDS Human protein_coding chr7:18629992 chr7:18630000 synonymous SNV . 0 29 hm5C_associated_SNPs_38519 0 0 0 0 1 Ribosome 1 0.500231643921092 0.53819751739502 0.999536712157815 hm5C_site_37950 DeepMRMD:0.53819751739502;iRNA_m5C:0.999536712157815 37951 chr16 31131803 31131803 1 + C T STAD 31131787 + 31131767 31131807 41 GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGCGCAA GAGCAGCCTGAGCGCAAGATCACTCGCAACCAAAAGTGCAA < 41bp 1 0.243940515246728 1 0.0652007162570953 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KAT8 ENSG00000103510 CDS Human protein_coding chr16:31131787 chr16:31131803 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_38520 0 0 1 0 1 Ribosome 1 0.500231643921035 1 0.999536712157931 hm5C_site_37951 DeepMRMD:1;iRNA_m5C:0.999536712157931 37952 chr13 73327858 73327858 1 + G T STAD 73327849 + 73327829 73327869 41 TGGATAGTGGCTATAATACGCAGAATTGTGGAAGCAATATT TGGATAGTGGCTATAATACGCAGAATTGTTGAAGCAATATT < 41bp 1 0.577146206074956 1 0.130265653133392 experiment 0.845707587850088 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BORA ENSG00000136122 CDS Human protein_coding chr13:73327849 chr13:73327858 stopgain 0.976 1 30 hm5C_associated_SNPs_38521 0 0 1 0 1 Cytosol 1 0.500247632379988 1 0.999504735240025 hm5C_site_37952 DeepMRMD:1;iRNA_m5C:0.999504735240025 37953 chr11 19970272 19970272 1 + C T STAD 19970261 + 19970241 19970281 41 TTGGAAACCACGTTTGACACCAATGTCACCACGGAGATGAG TTGGAAACCACGTTTGACACCAATGTCACCATGGAGATGAG < 41bp 1 0.0849944009533857 1 0.0772942900657654 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:19970261 chr11:19970272 nonsynonymous SNV 0.961 4 32 hm5C_associated_SNPs_38522 0 0 0 0 1 Nucleus 1 0.500231644446464 1 0.999536711107072 hm5C_site_37953 DeepMRMD:1;iRNA_m5C:0.999536711107072 37954 chr19 41077990 41077990 1 + G T STAD 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGTCCCGGCATCCGGGAGCACACACGGTGGGG < 41bp 1 0.323750210656794 1 0.858221411705017 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41077990 nonsynonymous SNV 0.692 1 12 hm5C_associated_SNPs_38523 0 0 1 0 1 cytosol 1 0.500231646641043 0.283557176589966 0.999536706717915 hm5C_site_37954 DeepMRMD:0.283557176589966;iRNA_m5C:0.999536706717915 37955 chr20 34832803 34832803 1 + C T STAD 34832788 + 34832768 34832808 41 TACCACCAGCTTGGTGAGATCCCCGCTGACTTCTTCGTAGA TACCACCAGCTTGGTGAGATCCCCGCTGACTTCTTTGTAGA < 41bp 1 0.36608173849349 1 0.514399707317352 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control AAR2 ENSG00000131043 CDS Human protein_coding chr20:34832788 chr20:34832803 synonymous SNV . 0 36 hm5C_associated_SNPs_38524 0 0 1 0 1 Ribosome 1 0.500231647198918 0.971200585365296 0.999536705602165 hm5C_site_37955 DeepMRMD:0.971200585365296;iRNA_m5C:0.999536705602165 37956 chr1 82372819 82372819 1 + A G STAD 82372824 + 82372804 82372844 41 TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGT TTGAGAGCGCTAACTGTGGTCGGACGGATGACAAGATTTGT < 41bp 1 0.285689310414939 1 0.76971447467804 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82372824 chr1:82372819 nonsynonymous SNV 0.918 4 16 hm5C_associated_SNPs_38525 0 0 1 0 1 cytosol 1 0.500231642849316 0.46057105064392 0.999536714301368 hm5C_site_37956 DeepMRMD:0.46057105064392;iRNA_m5C:0.999536714301368 37957 chr19 50548314 50548314 1 + G A STAD 50548302 + 50548282 50548322 41 CGACCACAGCCAGCAGGATTCTGTTCAGGAAGGGGAGAAAC CGACCACAGCCAGCAGGATTCTGTTCAGGAAGAGGAGAAAC < 41bp 1 0.31231084094816 1 0.0775163471698761 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50548302 chr19:50548314 nonsynonymous SNV 0.009 0 33 hm5C_associated_SNPs_38526 0 0 1 0 0 Cytosol 1 0.500231615556172 1 0.999536768887657 hm5C_site_37957 DeepMRMD:1;iRNA_m5C:0.999536768887657 37958 chr3 134851683 134851683 1 + C T STAD 134851688 + 134851668 134851708 41 CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCC CATCTGCAAAAAGTGTCGGGCAGACCGCCGGAGCTGCTCCC < 41bp 1 0.115883905724237 1 0.676267504692078 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851688 chr3:134851683 synonymous SNV . 0 16 hm5C_associated_SNPs_38527 0 0 0 1 0 exosome 1 0.500231643921093 0.647464990615844 0.999536712157815 hm5C_site_37958 DeepMRMD:0.647464990615844;iRNA_m5C:0.999536712157815 37959 chr5 71495207 71495207 1 + G T STAD 71495192 + 71495172 71495212 41 GTGGCCACACACTTGGGGACCCCAGCTACTCTTATGAAACC GTGGCCACACACTTGGGGACCCCAGCTACTCTTATTAAACC < 41bp 1 0.0826056072314073 1 0.182753622531891 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71495192 chr5:71495207 stopgain 0.994 1 36 hm5C_associated_SNPs_38528 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_37959 DeepMRMD:1;iRNA_m5C:0.999536712157815 37960 chr20 32660008 32660008 1 + C T STAD 32660003 + 32659983 32660023 41 AAATCAGATGTGGAGACCATCTTCTCTAAGTATGGCCGTGT AAATCAGATGTGGAGACCATCTTCTTTAAGTATGGCCGTGT < 41bp 1 0.223948767344769 1 0.0772636830806732 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32660003 chr20:32660008 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_38529 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_37960 DeepMRMD:1;iRNA_m5C:0.999536712157815 37961 chr18 56587298 56587298 1 + A G STAD 56587286 + 56587266 56587306 41 GCTTTCAACAAGGTGCTGAGCAGTGTCAATCCAGTCCCTGT GCTTTCAACAAGGTGCTGAGCAGTGTCAATCCGGTCCCTGT < 41bp 1 0.437565054401496 1 0.0951889157295227 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF532 ENSG00000074657 CDS Human protein_coding chr18:56587286 chr18:56587298 synonymous SNV . 0 33 hm5C_associated_SNPs_38530 0 0 1 0 0 Cytosol 1 0.500231663915871 1 0.999536672168259 hm5C_site_37961 DeepMRMD:1;iRNA_m5C:0.999536672168259 37962 chr7 45688316 45688316 1 + C T STAD 45688321 + 45688301 45688341 41 GGACTGCTACTACTGCGTGTCGGGCCTCACCCAGCCCAAGA GGACTGCTACTACTGTGTGTCGGGCCTCACCCAGCCCAAGA < 41bp 1 0.478721309118045 1 0.917625546455383 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45688321 chr7:45688316 synonymous SNV . 0 16 hm5C_associated_SNPs_38531 0 0 1 0 2 Nucleus 1 0.500231662349658 0.164748907089234 0.999536675300684 hm5C_site_37962 DeepMRMD:0.164748907089234;iRNA_m5C:0.999536675300684 37963 chr6 26124540 26124540 1 + C T STAD 26124556 + 26124536 26124576 41 TTCCCGGTGGGCCGAGTGCACCGCCTGCTCCGTAAAGGCAA TTCCTGGTGGGCCGAGTGCACCGCCTGCTCCGTAAAGGCAA < 41bp 1 0.576138100022923 1 0.159576505422592 experiment 0.847723799954155 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AC ENSG00000180573 CDS Human protein_coding chr6:26124556 chr6:26124540 nonsynonymous SNV 0.444 4 5 hm5C_associated_SNPs_38532 0 0 1 0 0 Ribosome 1 0.500231646784992 1 0.999536706430016 hm5C_site_37963 DeepMRMD:1;iRNA_m5C:0.999536706430016 37964 chr8 110569190 110569190 1 + G T STAD 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTATTAAGAAGAGAGAACCATTTAATTTTGGCATCCCA < 41bp 1 0.0298427892199692 1 0.182155042886734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569190 nonsynonymous SNV 0.996 1 26 hm5C_associated_SNPs_38533 0 0 1 0 2 Ribosome 1 0.500231634480368 1 0.999536731039264 hm5C_site_37964 DeepMRMD:1;iRNA_m5C:0.999536731039264 37965 chr18 72344603 72344603 1 + T C STAD 72344610 + 72344590 72344630 41 AATAGGACAGATTTGGAAATCCATGTGAAAAGGTGCCATGC AATAGGACAGATTCGGAAATCCATGTGAAAAGGTGCCATGC < 41bp 1 0.16180294235395 1 0.329249322414398 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF407 ENSG00000215421 CDS Human protein_coding chr18:72344610 chr18:72344603 nonsynonymous SNV 0.004 1 14 hm5C_associated_SNPs_38534 0 0 1 0 0 Cytosol 1 0.500231643921096 1 0.999536712157809 hm5C_site_37965 DeepMRMD:1;iRNA_m5C:0.999536712157809 37966 chr19 50881883 50881883 1 + T C STAD 50881902 + 50881882 50881922 41 CTCAGCCTCTGGGCCTGGGGCTTCCCCTGGTGGATCTGAGG CCCAGCCTCTGGGCCTGGGGCTTCCCCTGGTGGATCTGAGG < 41bp 1 0.0876900509780937 1 0.0848948955535889 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881902 chr19:50881883 nonsynonymous SNV 0.526 1 2 hm5C_associated_SNPs_38535 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37966 DeepMRMD:1;iRNA_m5C:0.999536712157815 37967 chr19 51227348 51227348 1 + C T STAD 51227338 + 51227318 51227358 41 CCCACCCCTGAGGACATCGTCACTTACATCCGTGAGTAACC CCCACCCCTGAGGACATCGTCACTTACATCTGTGAGTAACC < 41bp 1 0.124094910874097 1 0.0584205985069275 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLEC11A ENSG00000105472 CDS Human protein_coding chr19:51227338 chr19:51227348 synonymous SNV . 0 31 hm5C_associated_SNPs_38536 0 0 0 0 1 Ribosome 1 0.500231643921329 1 0.999536712157343 hm5C_site_37967 DeepMRMD:1;iRNA_m5C:0.999536712157343 37968 chr15 89172603 89172603 1 + G A STAD 89172606 + 89172586 89172626 41 CCCGGCCTCCACACCCGGGCCCGGGTCTCTCTAAAGGACCT CCCGGCCTCCACACCCGAGCCCGGGTCTCTCTAAAGGACCT < 41bp 1 0.492801667447392 1 0.345205962657928 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AEN ENSG00000181026 CDS Human protein_coding chr15:89172606 chr15:89172603 synonymous SNV . 0 18 hm5C_associated_SNPs_38537 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_37968 DeepMRMD:1;iRNA_m5C:0.999536712157814 37969 chr5 65105422 65105422 1 + G A STAD 65105431 + 65105411 65105451 41 GAAAATTGGGTGTGGGACGTCGATTCCCTCCGAAGATTGTC GAAAATTGGGTATGGGACGTCGATTCCCTCCGAAGATTGTC < 41bp 1 0.098385509193709 1 0.191223442554474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65105431 chr5:65105422 synonymous SNV . 0 12 hm5C_associated_SNPs_38538 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37969 DeepMRMD:1;iRNA_m5C:0.999536712157815 37970 chr1 24083515 24083515 1 + T C STAD 24083522 + 24083502 24083542 41 TTAACCCCAGCCCTGAGGAGCCGGCCTATGATGGCCCAAGC TTAACCCCAGCCCCGAGGAGCCGGCCTATGATGGCCCAAGC < 41bp 1 0.224186181436461 1 0.690634608268738 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ELOA ENSG00000011007 CDS Human protein_coding chr1:24083522 chr1:24083515 synonymous SNV . 0 14 hm5C_associated_SNPs_38539 0 0 1 0 1 unknown 1 0.500231643921135 0.618730783462524 0.99953671215773 hm5C_site_37970 DeepMRMD:0.618730783462524;iRNA_m5C:0.99953671215773 37971 chr11 65269106 65269106 1 + A G STAD 65269107 + 65269087 65269127 41 TGGGTTAGAGAAGGAGTGTACCGCTGTGCTGTTGGCACGAA TGGGTTAGAGAAGGAGTGTGCCGCTGTGCTGTTGGCACGAA < 41bp 1 0.504308314422083 1 0.300077348947525 experiment 0.991383371155833 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269107 chr11:65269106 . . 0 20 hm5C_associated_SNPs_38541 0 0 1 0 0 unknown 1 0.500231643149826 1 0.999536713700347 hm5C_site_37971 DeepMRMD:1;iRNA_m5C:0.999536713700347 37972 chr11 65269106 65269106 1 + A G STAD 65269110 + 65269090 65269130 41 GTTAGAGAAGGAGTGTACCGCTGTGCTGTTGGCACGAACAC GTTAGAGAAGGAGTGTGCCGCTGTGCTGTTGGCACGAACAC < 41bp 1 0.481184387114151 1 0.288647383451462 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269110 chr11:65269106 . . 0 17 hm5C_associated_SNPs_38542 0 0 1 0 0 unknown 1 0.500304119133453 1 0.999391761733094 hm5C_site_37972 DeepMRMD:1;iRNA_m5C:0.999391761733094 37973 chr11 65269106 65269106 1 + A G STAD 65269115 + 65269095 65269135 41 AGAAGGAGTGTACCGCTGTGCTGTTGGCACGAACACCTTCA AGAAGGAGTGTGCCGCTGTGCTGTTGGCACGAACACCTTCA < 41bp 1 0.385104112249681 1 0.147583216428757 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269115 chr11:65269106 . . 0 12 hm5C_associated_SNPs_38543 0 0 1 0 0 unknown 1 0.500231643921091 1 0.999536712157819 hm5C_site_37973 DeepMRMD:1;iRNA_m5C:0.999536712157819 37974 chr5 149212845 149212845 1 + C T STAD 149212851 + 149212831 149212871 41 TCACCCAAGAGCACCGGGCCCAGACCAAGCCTGCGCCCACT TCACCCAAGAGCACTGGGCCCAGACCAAGCCTGCGCCCACT < 41bp 1 0.259843856375304 1 0.144459068775177 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149212851 chr5:149212845 synonymous SNV . 0 15 hm5C_associated_SNPs_38544 0 0 0 0 0 chromatin 1 0.500231638416935 1 0.99953672316613 hm5C_site_37974 DeepMRMD:1;iRNA_m5C:0.99953672316613 37975 chr10 105174906 105174906 1 + C T STAD 105174899 + 105174879 105174919 41 TACCACATCGGGGATGAGGTCAAGTGCCGGGTGAGCCTCCT TACCACATCGGGGATGAGGTCAAGTGCTGGGTGAGCCTCCT < 41bp 1 0.464736090011421 1 0.754418551921844 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105174899 chr10:105174906 nonsynonymous SNV 0.986 4 28 hm5C_associated_SNPs_38545 0 0 1 0 1 Nucleus 1 0.500231643920257 0.491162896156312 0.999536712159486 hm5C_site_37975 DeepMRMD:0.491162896156312;iRNA_m5C:0.999536712159486 37976 chr19 36594075 36594075 1 + G T STAD 36594068 + 36594048 36594088 41 GTGCCTGCAGGTCCTCGCTGCAGGGAAGGCTGAAGAGACCC GTGCCTGCAGGTCCTCGCTGCAGGGAATGCTGAAGAGACCC < 41bp 1 0.551520586526459 1 0.896822929382324 experiment 0.896958826947081 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594068 chr19:36594075 nonsynonymous SNV 0.022 1 28 hm5C_associated_SNPs_38546 0 0 1 0 2 Nucleus 1 0.500231644291813 0.206354141235352 0.999536711416375 hm5C_site_37976 DeepMRMD:0.206354141235352;iRNA_m5C:0.999536711416375 37977 chr2 207174987 207174987 1 + C T STAD 207175003 + 207174983 207175023 41 GTGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGA GTGGTCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGA < 41bp 1 0.0366486272527182 1 0.0304323136806488 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207175003 chr2:207174987 nonsynonymous SNV 0.888 1 5 hm5C_associated_SNPs_38547 0 0 1 0 0 Nucleus 1 0.500229463386751 1 0.999541073226498 hm5C_site_37977 DeepMRMD:1;iRNA_m5C:0.999541073226498 37978 chr2 207174987 207174987 1 + C T STAD 207175004 + 207174984 207175024 41 TGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGAG TGGTCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGAG < 41bp 1 0.259435905105005 1 0.0625672340393066 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207175004 chr2:207174987 nonsynonymous SNV 0.888 1 4 hm5C_associated_SNPs_38548 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_37978 DeepMRMD:1;iRNA_m5C:0.999536712157815 37979 chr18 19209067 19209067 1 + C T STAD 19209061 + 19209041 19209081 41 GAAGAGGAAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGA GAAGAGGAAGAGGAAGAGGACGTGGCTGTGGCAGAGGAAGA < 41bp 1 0.67353291638633 1 0.413208693265915 experiment 0.652934167227341 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209061 chr18:19209067 nonsynonymous SNV 0.998 4 27 hm5C_associated_SNPs_38549 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37979 DeepMRMD:1;iRNA_m5C:0.999536712157815 37980 chr3 134851684 134851684 1 + C T STAD 134851688 + 134851668 134851708 41 CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCC CATCTGCAAAAAGTGCTGGGCAGACCGCCGGAGCTGCTCCC < 41bp 1 0.132210000245971 1 0.552149653434753 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851688 chr3:134851684 nonsynonymous SNV 0.968 2 17 hm5C_associated_SNPs_38550 0 0 0 1 0 exosome 1 0.500231643921069 0.895700693130494 0.999536712157862 hm5C_site_37980 DeepMRMD:0.895700693130494;iRNA_m5C:0.999536712157862 37981 chr17 21215543 21215543 1 + G A STAD 21215563 + 21215543 21215583 41 GCTCCCAGCCGACCGTTTCTCCCCCGAGTTTGTGGACTTCA ACTCCCAGCCGACCGTTTCTCCCCCGAGTTTGTGGACTTCA < 41bp 1 0.27204127366013 1 0.0642624497413635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215563 chr17:21215543 synonymous SNV . 0 1 hm5C_associated_SNPs_38551 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37981 DeepMRMD:1;iRNA_m5C:0.999536712157815 37982 chr22 39826095 39826095 1 + C A STAD 39826113 + 39826093 39826133 41 CTCTTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA CTATTCCGCTCCCGGCCCGCCCACTCGCTCCCGCCTGGCGA < 41bp 1 0.0935544226861947 1 0.172200232744217 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAB1 ENSG00000100324 CDS Human protein_coding chr22:39826113 chr22:39826095 synonymous SNV . 0 3 hm5C_associated_SNPs_38552 0 0 1 0 1 Cytosol 1 0.500231642451908 1 0.999536715096184 hm5C_site_37982 DeepMRMD:1;iRNA_m5C:0.999536715096184 37983 chr14 73637541 73637541 1 + C T STAD 73637529 + 73637509 73637549 41 ACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTT ACAATAGAGAACGGCAGGAGCACAACGACAGATGGAGCCTT < 41bp 1 0.657201027757267 1 0.274886548519135 experiment 0.685597944485467 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637529 chr14:73637541 nonsynonymous SNV 0.044 3 33 hm5C_associated_SNPs_38553 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37983 DeepMRMD:1;iRNA_m5C:0.999536712157815 37984 chr14 73637541 73637541 1 + C T STAD 73637531 + 73637511 73637551 41 AATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG AATAGAGAACGGCAGGAGCACAACGACAGATGGAGCCTTGG < 41bp 1 0.566314493419099 1 0.257904201745987 experiment 0.867371013161801 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637531 chr14:73637541 nonsynonymous SNV 0.044 3 31 hm5C_associated_SNPs_38554 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37984 DeepMRMD:1;iRNA_m5C:0.999536712157815 37985 chr10 103919311 103919311 1 + T C STAD 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCACGAAAAAT < 41bp 1 0.535443845433656 1 0.50555157661438 experiment 0.929112309132688 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919311 nonsynonymous SNV 0.719 0 34 hm5C_associated_SNPs_38555 0 0 1 0 1 Nucleus 1 0.500231643933608 0.98889684677124 0.999536712132784 hm5C_site_37985 DeepMRMD:0.98889684677124;iRNA_m5C:0.999536712132784 37986 chr7 138944044 138944044 1 + T C STAD 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TTGAGACGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.535496567583142 1 0.685847640037537 experiment 0.929006864833716 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944044 nonsynonymous SNV 0.994 0 7 hm5C_associated_SNPs_38556 0 0 1 0 2 Cytosol 1 0.500231643921092 0.628304719924926 0.999536712157815 hm5C_site_37986 DeepMRMD:0.628304719924926;iRNA_m5C:0.999536712157815 37987 chr1 36028856 36028856 1 + T A STAD 36028846 + 36028826 36028866 41 ACCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAG ACCTGACCGTTGAAGATGGGCCCCGGGAGAACCTGATCAAG < 41bp 1 0.324882751050152 1 0.0462495386600494 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028846 chr1:36028856 nonsynonymous SNV 0.994 3 31 hm5C_associated_SNPs_38557 0 0 0 0 1 Endoplasmic reticulum 1 0.500231650598329 1 0.999536698803342 hm5C_site_37987 DeepMRMD:1;iRNA_m5C:0.999536698803342 37988 chr1 36028856 36028856 1 + T A STAD 36028847 + 36028827 36028867 41 CCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGG CCTGACCGTTGAAGATGGGCCCCGGGAGAACCTGATCAAGG < 41bp 1 0.370826367495635 1 0.205090224742889 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028847 chr1:36028856 nonsynonymous SNV 0.994 3 30 hm5C_associated_SNPs_38558 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_37988 DeepMRMD:1;iRNA_m5C:0.999536712157815 37989 chr1 36028856 36028856 1 + T A STAD 36028848 + 36028828 36028868 41 CTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGGA CTGACCGTTGAAGATGGGCCCCGGGAGAACCTGATCAAGGA < 41bp 1 0.453885726826693 1 0.387014865875244 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028848 chr1:36028856 nonsynonymous SNV 0.994 3 29 hm5C_associated_SNPs_38559 0 0 0 0 1 Endoplasmic reticulum 1 0.500231715439955 1 0.99953656912009 hm5C_site_37989 DeepMRMD:1;iRNA_m5C:0.99953656912009 37990 chr1 36028856 36028856 1 + T A STAD 36028874 + 36028854 36028894 41 GATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGT GAACCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGT < 41bp 1 0.0498242416767472 1 0.0876727104187012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028874 chr1:36028856 nonsynonymous SNV 0.994 3 3 hm5C_associated_SNPs_38560 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643910231 1 0.999536712179537 hm5C_site_37990 DeepMRMD:1;iRNA_m5C:0.999536712179537 37991 chr1 36028856 36028856 1 + T A STAD 36028876 + 36028856 36028896 41 TCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGTAT ACCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAGTAT < 41bp 1 0.0268096358491467 1 0.0668981373310089 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36028876 chr1:36028856 nonsynonymous SNV 0.994 3 1 hm5C_associated_SNPs_38561 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643561693 1 0.999536712876615 hm5C_site_37991 DeepMRMD:1;iRNA_m5C:0.999536712876615 37992 chr20 47641885 47641885 1 + G A STAD 47641892 + 47641872 47641912 41 TCCACATAGAGACGGAGGATCAGGGCATGTATAAGTACATG TCCACATAGAGACAGAGGATCAGGGCATGTATAAGTACATG < 41bp 1 0.512917559081821 1 0.80031430721283 experiment 0.974164881836357 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47641892 chr20:47641885 synonymous SNV . 0 14 hm5C_associated_SNPs_38562 0 0 1 0 1 Cytosol 1 0.500231643921091 0.39937138557434 0.999536712157818 hm5C_site_37992 DeepMRMD:0.39937138557434;iRNA_m5C:0.999536712157818 37993 chr22 38313789 38313789 1 + A G STAD 38313800 + 38313780 38313820 41 TGGAACCAGAAGATGTGGCTCAGGTAGGCAGATACCTGGAG TGGAACCAGGAGATGTGGCTCAGGTAGGCAGATACCTGGAG < 41bp 1 0.635114428192153 1 0.594373106956482 experiment 0.729771143615695 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38313800 chr22:38313789 nonsynonymous SNV 0.205 0 10 hm5C_associated_SNPs_38563 0 0 1 0 2 Ribosome 1 0.500231644119139 0.811253786087036 0.999536711761722 hm5C_site_37993 DeepMRMD:0.811253786087036;iRNA_m5C:0.999536711761722 37994 chr5 139917038 139917038 1 + A G STAD 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATGCCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC < 41bp 1 0.318053177888235 1 0.587997436523438 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917038 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_38564 0 0 1 0 1 unknown 1 0.500231643921092 0.824005126953124 0.999536712157815 hm5C_site_37994 DeepMRMD:0.824005126953124;iRNA_m5C:0.999536712157815 37995 chr1 220279329 220279329 1 + C T STAD 220279315 + 220279295 220279335 41 TTACCTGCAAATCATGTGACCATGGCAAAAGGAACGGGATT TTACCTGCAAATCATGTGACCATGGCAAAAGGAATGGGATT < 41bp 1 0.196565976701289 1 0.316762089729309 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IARS2 ENSG00000067704 CDS Human protein_coding chr1:220279315 chr1:220279329 nonsynonymous SNV 0.999 3 35 hm5C_associated_SNPs_38565 0 0 1 0 2 Ribosome 1 0.500231643921124 1 0.999536712157753 hm5C_site_37995 DeepMRMD:1;iRNA_m5C:0.999536712157753 37996 chr6 35438046 35438046 1 + T C STAD 35438048 + 35438028 35438068 41 TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAAC TAAATAAGGCAGGAAAGTCCCCTTCCCTGCTCACACACAAC < 41bp 1 0.0280311671015256 1 0.154522955417633 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438048 chr6:35438046 nonsynonymous SNV 0.995 2 19 hm5C_associated_SNPs_38566 0 0 1 0 2 Cytosol 1 0.500231643921246 1 0.999536712157507 hm5C_site_37996 DeepMRMD:1;iRNA_m5C:0.999536712157507 37997 chr17 80544048 80544048 1 + G T STAD 80544032 + 80544012 80544052 41 GGCAGCCGTGCTGGCCCCTCCTAAGGCAGAGGCCCAGGAGA GGCAGCCGTGCTGGCCCCTCCTAAGGCAGAGGCCCATGAGA < 41bp 1 0.395443272111599 1 0.690102100372314 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80544032 chr17:80544048 nonsynonymous SNV 0.633 2 37 hm5C_associated_SNPs_38567 0 0 1 0 1 Cytosol 1 0.500231643921092 0.619795799255372 0.999536712157815 hm5C_site_37997 DeepMRMD:0.619795799255372;iRNA_m5C:0.999536712157815 37998 chr6 43143586 43143586 1 + C T STAD 43143566 + 43143546 43143586 41 CCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGTCTGC CCCTCCTTTCCCATCACCAACTACCTGGCACCAGTGTCTGT < 41bp 1 0.150021115109361 1 0.0646924674510956 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SRF ENSG00000112658 CDS Human protein_coding chr6:43143566 chr6:43143586 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_38568 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_37998 DeepMRMD:1;iRNA_m5C:0.999536712157815 37999 chr15 91432761 91432761 1 + T C STAD 91432750 + 91432730 91432770 41 GGCGCTGTCCCCCACAGGTCCGCACCTGACGTCCCACCCTG GGCGCTGTCCCCCACAGGTCCGCACCTGACGCCCCACCCTG < 41bp 1 0.341633994133386 1 0.0894729495048523 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FES ENSG00000182511 CDS Human protein_coding chr15:91432750 chr15:91432761 nonsynonymous SNV 0.867 0 32 hm5C_associated_SNPs_38569 0 0 0 0 1 cytosol 1 0.500231641029855 1 0.999536717940291 hm5C_site_37999 DeepMRMD:1;iRNA_m5C:0.999536717940291 38000 chr16 601525 601525 1 + C T STAD 601540 + 601520 601560 41 GGCTCCGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC GGCTCTGAAACCCGTGGGGCCGTTTCTCCTGGAACGGCAGC < 41bp 1 0.0299451332706042 1 0.0626651346683502 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601540 chr16:601525 stopgain 0.990 1 6 hm5C_associated_SNPs_38570 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38000 DeepMRMD:1;iRNA_m5C:0.999536712157815 38001 chr19 36213584 36213584 1 + C A STAD 36213602 + 36213582 36213622 41 CCCTCCCTCTCCGGGATCGGCAGGACCTCGCCACAGAGGGT CCATCCCTCTCCGGGATCGGCAGGACCTCGCCACAGAGGGT < 41bp 1 0.502165996788473 1 0.655506193637848 experiment 0.995668006423053 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36213602 chr19:36213584 nonsynonymous SNV 0.995 4 3 hm5C_associated_SNPs_38571 0 0 1 0 0 chromatin 1 0.500231643921606 0.688987612724304 0.999536712156788 hm5C_site_38001 DeepMRMD:0.688987612724304;iRNA_m5C:0.999536712156788 38002 chr7 30673476 30673476 1 + A C STAD 30673480 + 30673460 30673500 41 AGACAATCGAGGAATGAGGACAATTTTGACAACTTTTGACC AGACAATCGAGGAATGCGGACAATTTTGACAACTTTTGACC < 41bp 1 0.160411795190336 1 0.0811029672622681 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GARS ENSG00000106105 CDS Human protein_coding chr7:30673480 chr7:30673476 stoploss 0.700 0 17 hm5C_associated_SNPs_38572 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38002 DeepMRMD:1;iRNA_m5C:0.999536712157815 38003 chr11 117152365 117152365 1 + G A STAD 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAACAGCCT < 41bp 1 0.522050198430597 1 0.486700862646103 experiment 0.955899603138805 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152365 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_38573 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38003 DeepMRMD:1;iRNA_m5C:0.999536712157815 38004 chr17 33592743 33592743 1 + G A STAD 33592726 + 33592706 33592746 41 GTTACTACAGATCGGTGATGCGTCGGATGTTCTAACCGATC GTTACTACAGATCGGTGATGCGTCGGATGTTCTAACCAATC < 41bp 1 0.387547691523725 1 0.44854074716568 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLFN5 ENSG00000166750 CDS Human protein_coding chr17:33592726 chr17:33592743 nonsynonymous SNV 0.000 0 38 hm5C_associated_SNPs_38574 0 0 0 0 0 nucleus 1 0.500231650648475 1 0.999536698703049 hm5C_site_38004 DeepMRMD:1;iRNA_m5C:0.999536698703049 38005 chr18 21508172 21508172 1 + G T STAD 21508167 + 21508147 21508187 41 TGTCGTTAGATTGAATGATACTGTGGGAGTAACCAAAAAGT TGTCGTTAGATTGAATGATACTGTGTGAGTAACCAAAAAGT < 41bp 1 0.118509129020286 1 0.181551098823547 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21508167 chr18:21508172 stopgain 0.994 0 26 hm5C_associated_SNPs_38575 0 0 1 0 2 Cytosol 1 0.500257655675006 1 0.999484688649988 hm5C_site_38005 DeepMRMD:1;iRNA_m5C:0.999484688649988 38006 chr18 21508172 21508172 1 + G T STAD 21508180 + 21508160 21508200 41 AATGATACTGTGGGAGTAACCAAAAAGTGCTCGGAAGACTG AATGATACTGTGTGAGTAACCAAAAAGTGCTCGGAAGACTG < 41bp 1 0.391878890252225 1 0.414385735988617 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21508180 chr18:21508172 stopgain 0.994 0 13 hm5C_associated_SNPs_38576 0 0 1 0 2 Cytosol 1 0.50023166055822 1 0.999536678883561 hm5C_site_38006 DeepMRMD:1;iRNA_m5C:0.999536678883561 38007 chr5 140516544 140516544 1 + G A STAD 140516546 + 140516526 140516566 41 TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTC TCCATCAACGCGGACAACAGCCACCTGTTTGCCCTCAGGTC < 41bp 1 0.167458775750015 1 0.123760908842087 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140516546 chr5:140516544 nonsynonymous SNV 0.910 3 19 hm5C_associated_SNPs_38577 0 0 0 0 0 Endoplasmic reticulum 1 0.500231626749009 1 0.999536746501982 hm5C_site_38007 DeepMRMD:1;iRNA_m5C:0.999536746501982 38008 chr20 31021453 31021453 1 + G C STAD 31021436 + 31021416 31021456 41 CAGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCT CAGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGACTCT < 41bp 1 0.562595189968833 1 0.131697177886963 experiment 0.874809620062333 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021436 chr20:31021453 nonsynonymous SNV 0.001 1 38 hm5C_associated_SNPs_38578 0 0 1 0 0 Nucleus 1 0.500231643752287 1 0.999536712495425 hm5C_site_38008 DeepMRMD:1;iRNA_m5C:0.999536712495425 38009 chr20 31021453 31021453 1 + G C STAD 31021437 + 31021417 31021457 41 AGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCTG AGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGACTCTG < 41bp 1 0.549461828668014 1 0.401122808456421 experiment 0.901076342663973 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021437 chr20:31021453 nonsynonymous SNV 0.001 1 37 hm5C_associated_SNPs_38579 0 0 1 0 0 Nucleus 1 0.500231643924139 1 0.999536712151721 hm5C_site_38009 DeepMRMD:1;iRNA_m5C:0.999536712151721 38010 chr20 31021453 31021453 1 + G C STAD 31021472 + 31021452 31021492 41 AGTCTGTGGCTTCTCGGATCCAGGCTGAGCCAGACAACTTG ACTCTGTGGCTTCTCGGATCCAGGCTGAGCCAGACAACTTG < 41bp 1 0.654865103861393 1 0.500840485095978 experiment 0.690269792277215 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021472 chr20:31021453 nonsynonymous SNV 0.001 1 2 hm5C_associated_SNPs_38580 0 0 1 0 0 Nucleus 1 0.500231643919912 0.998319029808044 0.999536712160176 hm5C_site_38010 DeepMRMD:0.998319029808044;iRNA_m5C:0.999536712160176 38011 chr9 106874035 106874035 1 + T C STAD 106874053 + 106874033 106874073 41 CTTGCTGGTCAAATGATGGCCTGTAAAAATGATATAAGTAA CTCGCTGGTCAAATGATGGCCTGTAAAAATGATATAAGTAA < 41bp 1 0.376992392596995 1 0.376161694526672 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106874053 chr9:106874035 synonymous SNV . 0 3 hm5C_associated_SNPs_38581 0 0 1 0 0 Cytosol 1 0.500231919335721 1 0.999536161328559 hm5C_site_38011 DeepMRMD:1;iRNA_m5C:0.999536161328559 38012 chr19 18966037 18966037 1 + C T STAD 18966036 + 18966016 18966056 41 CACCATCGTCTACCACCTGGCCCGGCAAGGCAACGGGTAGG CACCATCGTCTACCACCTGGCTCGGCAAGGCAACGGGTAGG < 41bp 1 0.435199115329734 1 0.11017319560051 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966036 chr19:18966037 synonymous SNV . 0 22 hm5C_associated_SNPs_38582 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38012 DeepMRMD:1;iRNA_m5C:0.999536712157815 38013 chr19 18966037 18966037 1 + C T STAD 18966038 + 18966018 18966058 41 CCATCGTCTACCACCTGGCCCGGCAAGGCAACGGGTAGGGC CCATCGTCTACCACCTGGCTCGGCAAGGCAACGGGTAGGGC < 41bp 1 0.641684321735343 1 0.199085533618927 experiment 0.716631356529314 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966038 chr19:18966037 synonymous SNV . 0 20 hm5C_associated_SNPs_38583 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38013 DeepMRMD:1;iRNA_m5C:0.999536712157815 38014 chr12 94562997 94562997 1 + A T STAD 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACTTCCGTTTATGGCACCGTGGTAAT < 41bp 1 0.0615435883157767 1 0.0667796432971954 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94562997 synonymous SNV . 0 18 hm5C_associated_SNPs_38584 0 0 1 0 2 chromatin 1 0.500231648837406 1 0.999536702325188 hm5C_site_38014 DeepMRMD:1;iRNA_m5C:0.999536702325188 38015 chr9 35792588 35792588 1 + C T STAD 35792598 + 35792578 35792618 41 GGGCACTGCCCGTGGACCTGCGGTTTGTCAGCTCCGAACTG GGGCACTGCCTGTGGACCTGCGGTTTGTCAGCTCCGAACTG < 41bp 1 0.550321119936999 1 0.425009429454803 experiment 0.899357760126002 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NPR2 ENSG00000159899 CDS Human protein_coding chr9:35792598 chr9:35792588 synonymous SNV . 0 11 hm5C_associated_SNPs_38585 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38015 DeepMRMD:1;iRNA_m5C:0.999536712157815 38016 chr6 31605358 31605358 1 + C T STAD 31605371 + 31605351 31605391 41 CCCACCCCGCTGAGGGAGTTCCTCTTGCCCCCTACCCCCGG CCCACCCTGCTGAGGGAGTTCCTCTTGCCCCCTACCCCCGG < 41bp 1 0.216507202703784 1 0.234406769275665 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31605371 chr6:31605358 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_38586 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38016 DeepMRMD:1;iRNA_m5C:0.999536712157815 38017 chr17 36508871 36508871 1 + G T STAD 36508864 + 36508844 36508884 41 AGAGCTGGCTGCTTCAGCTGCGAGCCTGACAGACATGGGAG AGAGCTGGCTGCTTCAGCTGCGAGCCTTACAGACATGGGAG < 41bp 1 0.426169313664152 1 0.502792418003082 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOCS7 ENSG00000174111 CDS Human other chr17:36508864 chr17:36508871 synonymous SNV . 0 28 hm5C_associated_SNPs_38587 0 0 1 0 1 Cytosol 1 0.50023164398475 0.994415163993836 0.999536712030499 hm5C_site_38017 DeepMRMD:0.994415163993836;iRNA_m5C:0.999536712030499 38018 chr17 36508871 36508871 1 + G T STAD 36508869 + 36508849 36508889 41 TGGCTGCTTCAGCTGCGAGCCTGACAGACATGGGAGGCTCT TGGCTGCTTCAGCTGCGAGCCTTACAGACATGGGAGGCTCT < 41bp 1 0.0366825376971863 1 0.0882514119148254 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOCS7 ENSG00000174111 CDS Human other chr17:36508869 chr17:36508871 synonymous SNV . 0 23 hm5C_associated_SNPs_38588 0 0 1 0 1 Cytosol 1 0.500231644123774 1 0.999536711752453 hm5C_site_38018 DeepMRMD:1;iRNA_m5C:0.999536711752453 38019 chr19 36218419 36218419 1 + C T STAD 36218408 + 36218388 36218428 41 CTGCGGACCGTGTGCTGGGGCAGCGCAGCCCCGCTGGCGAG CTGCGGACCGTGTGCTGGGGCAGCGCAGCCCTGCTGGCGAG < 41bp 1 0.613332172532549 1 0.444473117589951 experiment 0.773335654934901 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218408 chr19:36218419 nonsynonymous SNV 0.959 5 32 hm5C_associated_SNPs_38589 0 0 1 0 1 chromatin 1 0.500231643932177 1 0.999536712135647 hm5C_site_38019 DeepMRMD:1;iRNA_m5C:0.999536712135647 38020 chr3 119205779 119205779 1 + A C STAD 119205764 + 119205744 119205784 41 GAATACACCAAAAACCAGGCCTGGAAATCTATGAAAGTAAT GAATACACCAAAAACCAGGCCTGGAAATCTATGAACGTAAT < 41bp 1 0.676070175961301 1 0.137391656637192 experiment 0.647859648077399 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119205764 chr3:119205779 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_38591 0 0 1 0 2 Ribosome 1 0.500231683426529 1 0.999536633146942 hm5C_site_38020 DeepMRMD:1;iRNA_m5C:0.999536633146942 38021 chr3 184021842 184021842 1 + G A STAD 184021833 + 184021813 184021853 41 GACTATGTTCTCCACAACAGCAACACCATGAGACTTGGTTC GACTATGTTCTCCACAACAGCAACACCATAAGACTTGGTTC < 41bp 1 0.581256487040605 1 0.426441550254822 experiment 0.837487025918791 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184021833 chr3:184021842 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_38592 0 0 1 0 1 Ribosome 1 0.500237963775863 1 0.999524072448273 hm5C_site_38021 DeepMRMD:1;iRNA_m5C:0.999524072448273 38022 chr19 52195895 52195895 1 + G C STAD 52195882 + 52195862 52195902 41 CCTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGC CCTGGCACCCACCCGTAGAACCGACCTTGCGGGCCCTTCGC < 41bp 1 0.301690279001533 1 0.207663804292679 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195882 chr19:52195895 . . 0 34 hm5C_associated_SNPs_38593 0 0 1 0 0 unknown 1 0.500231643906929 1 0.999536712186141 hm5C_site_38022 DeepMRMD:1;iRNA_m5C:0.999536712186141 38023 chr19 52195895 52195895 1 + G C STAD 52195883 + 52195863 52195903 41 CTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCC CTGGCACCCACCCGTAGAACCGACCTTGCGGGCCCTTCGCC < 41bp 1 0.436508384015394 1 0.370754241943359 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195883 chr19:52195895 . . 0 33 hm5C_associated_SNPs_38594 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_38023 DeepMRMD:1;iRNA_m5C:0.999536712157815 38024 chr19 52195895 52195895 1 + G C STAD 52195886 + 52195866 52195906 41 GCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCA GCACCCACCCGTAGAACCGACCTTGCGGGCCCTTCGCCGCA < 41bp 1 0.097518354812572 1 0.0184946060180664 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195886 chr19:52195895 . . 0 30 hm5C_associated_SNPs_38595 0 0 1 0 0 unknown 1 0.500231643921068 1 0.999536712157864 hm5C_site_38024 DeepMRMD:1;iRNA_m5C:0.999536712157864 38025 chr19 52195895 52195895 1 + G C STAD 52195887 + 52195867 52195907 41 CACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCAC CACCCACCCGTAGAACCGACCTTGCGGGCCCTTCGCCGCAC < 41bp 1 0.368997765043846 1 0.128837913274765 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195887 chr19:52195895 . . 0 29 hm5C_associated_SNPs_38596 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_38025 DeepMRMD:1;iRNA_m5C:0.999536712157815 38026 chr6 150290471 150290471 1 + C T STAD 150290478 + 150290458 150290498 41 AATTTTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT AATTTTTGATGTATTGGGAACAAATGCTGGATCCAACAAGT < 41bp 1 0.238777898167912 1 0.450637489557266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290478 chr6:150290471 synonymous SNV . 0 14 hm5C_associated_SNPs_38597 0 0 1 0 1 Nucleus 1 0.500231862527937 1 0.999536274944126 hm5C_site_38026 DeepMRMD:1;iRNA_m5C:0.999536274944126 38027 chr20 47895511 47895511 1 + T C STAD 47895499 + 47895479 47895519 41 TGGTGTAAATGATGACTTCACTTTTTTCCCCATCAGATCGA TGGTGTAAATGATGACTTCACTTTTTTCCCCACCAGATCGA < 41bp 1 0.112320614637035 1 0.043287605047226 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895499 chr20:47895511 . . 0 33 hm5C_associated_SNPs_38598 0 0 1 0 0 unknown 1 0.500231641497513 1 0.999536717004973 hm5C_site_38027 DeepMRMD:1;iRNA_m5C:0.999536717004973 38028 chr20 47895511 47895511 1 + T C STAD 47895509 + 47895489 47895529 41 GATGACTTCACTTTTTTCCCCATCAGATCGACAATGCTGAC GATGACTTCACTTTTTTCCCCACCAGATCGACAATGCTGAC < 41bp 1 0.562702116511849 1 0.126337140798569 experiment 0.874595766976303 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895509 chr20:47895511 . . 0 23 hm5C_associated_SNPs_38599 0 0 1 0 0 unknown 1 0.500228895332152 1 0.999542209335696 hm5C_site_38028 DeepMRMD:1;iRNA_m5C:0.999542209335696 38029 chr20 47895511 47895511 1 + T C STAD 47895529 + 47895509 47895549 41 CATCAGATCGACAATGCTGACGTCTTATATTTTGCCAGTTA CACCAGATCGACAATGCTGACGTCTTATATTTTGCCAGTTA < 41bp 1 0.183920250647198 1 0.0546929538249969 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12C ENSG00000209042 ncRNA_exonic Human snoRNA chr20:47895529 chr20:47895511 . . 0 3 hm5C_associated_SNPs_38600 0 0 1 0 0 unknown 1 0.500231628390827 1 0.999536743218346 hm5C_site_38029 DeepMRMD:1;iRNA_m5C:0.999536743218346 38030 chr2 220502442 220502442 1 + C T STAD 220502432 + 220502412 220502452 41 GCCCCCCCAGCCCGAGGAACCAGCCCAATACGGCACTGCTC GCCCCCCCAGCCCGAGGAACCAGCCCAATATGGCACTGCTC < 41bp 1 0.341685170545071 1 0.639978528022766 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220502432 chr2:220502442 nonsynonymous SNV 0.441 4 31 hm5C_associated_SNPs_38601 0 0 0 0 0 Cytosol 1 0.500231669506439 0.720042943954468 0.999536660987122 hm5C_site_38030 DeepMRMD:0.720042943954468;iRNA_m5C:0.999536660987122 38031 chr11 65827423 65827423 1 + G A STAD 65827410 + 65827390 65827430 41 CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTGCCAGACT CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTACCAGACT < 41bp 1 0.152654948836797 1 0.0397890210151672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827410 chr11:65827423 synonymous SNV . 0 34 hm5C_associated_SNPs_38602 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38031 DeepMRMD:1;iRNA_m5C:0.999536712157815 38032 chr19 30935211 30935211 1 + G A STAD 30935230 + 30935210 30935250 41 CGTTCCCGACGTGGCCCACCCGGTGCCCTCGCCCAAGCCTG CATTCCCGACGTGGCCCACCCGGTGCCCTCGCCCAAGCCTG < 41bp 1 0.629622876148668 1 0.614802122116089 experiment 0.740754247702664 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935230 chr19:30935211 nonsynonymous SNV 0.872 0 2 hm5C_associated_SNPs_38603 0 0 0 0 0 exosome 1 0.500231643921088 0.770395755767822 0.999536712157823 hm5C_site_38032 DeepMRMD:0.770395755767822;iRNA_m5C:0.999536712157823 38033 chr11 65396109 65396109 1 + T G STAD 65396110 + 65396090 65396130 41 CGTTTCGTGCTGACCTACATCGCGCCCTGGCAGATCACCTG CGTTTCGTGCTGACCTACAGCGCGCCCTGGCAGATCACCTG < 41bp 1 0.381152146496103 1 0.509104311466217 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396110 chr11:65396109 nonsynonymous SNV 0.987 4 20 hm5C_associated_SNPs_38604 0 0 0 0 2 Ribosome 1 0.500231647007328 0.981791377067566 0.999536705985343 hm5C_site_38033 DeepMRMD:0.981791377067566;iRNA_m5C:0.999536705985343 38034 chr13 53216744 53216744 1 + G A STAD 53216749 + 53216729 53216769 41 TGAGCAATGGGGAACGCTCACAGACTGTGTGGTAATGAGAG TGAGCAATGGGGAACACTCACAGACTGTGTGGTAATGAGAG < 41bp 1 0.546142317629865 1 0.202677726745605 experiment 0.907715364740269 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HNRNPA1L2 ENSG00000139675 CDS Human protein_coding chr13:53216749 chr13:53216744 synonymous SNV . 0 16 hm5C_associated_SNPs_38605 0 0 0 0 0 Ribosome 1 0.500230602955586 1 0.999538794088827 hm5C_site_38034 DeepMRMD:1;iRNA_m5C:0.999538794088827 38035 chr2 11312071 11312071 1 + C T STAD 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCTATGTACTTTCATCAGTGCGGCCAGTAAGTT < 41bp 1 0.63397255849934 1 0.139862895011902 experiment 0.73205488300132 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312071 synonymous SNV . 0 27 hm5C_associated_SNPs_38606 0 0 0 0 1 Ribosome 1 0.500231643921587 1 0.999536712156825 hm5C_site_38035 DeepMRMD:1;iRNA_m5C:0.999536712156825 38036 chr17 58024111 58024111 1 + A G STAD 58024120 + 58024100 58024140 41 CTTTTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATG CTTTTCCCATGGTCTCCAAACGGCCAGAGCACCTGCGTATG < 41bp 1 0.556375629800927 1 0.388607025146484 experiment 0.887248740398145 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58024120 chr17:58024111 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_38607 0 0 0 0 0 Ribosome 1 0.500231643921347 1 0.999536712157305 hm5C_site_38036 DeepMRMD:1;iRNA_m5C:0.999536712157305 38037 chr17 58024111 58024111 1 + A G STAD 58024123 + 58024103 58024143 41 TTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATGAAT TTCCCATGGTCTCCAAACGGCCAGAGCACCTGCGTATGAAT < 41bp 1 0.436330919822599 1 0.0805986225605011 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58024123 chr17:58024111 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_38608 0 0 0 0 0 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_38037 DeepMRMD:1;iRNA_m5C:0.999536712157817 Age-related macular degeneration 38038 chr7 66563551 66563551 1 + C T STAD 66563534 + 66563514 66563554 41 ACTGTATTCTCCAGGAGTACCGGGCGTCAAAGCAGAACGCT ACTGTATTCTCCAGGAGTACCGGGCGTCAAAGCAGAATGCT < 41bp 1 0.676584422926346 1 0.867416381835938 experiment 0.646831154147307 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66563534 chr7:66563551 nonsynonymous SNV 0.131 2 38 hm5C_associated_SNPs_38609 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643922611 0.265167236328124 0.999536712154778 hm5C_site_38038 DeepMRMD:0.265167236328124;iRNA_m5C:0.999536712154778 38039 chrX 73045197 73045197 1 + A G STAD 73045203 - 73045183 73045223 41 TGTGGATACAAAGAAAGGAGCAAGCATAAAAAAGTGCTCTT TGTGGATACAAAGAAAGGAGCAAGCACAAAAAAGTGCTCTT < 41bp 1 0.145513146346812 1 0.357937723398209 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045203 chrX:73045197 . . 0 27 hm5C_associated_SNPs_38610 0 0 1 1 0 unknown 1 0.500231644077947 1 0.999536711844106 hm5C_site_38039 DeepMRMD:1;iRNA_m5C:0.999536711844106 38040 chrX 73045197 73045197 1 + A G STAD 73045215 - 73045195 73045235 41 TGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATAA TGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCACAA < 41bp 1 0.336625298314479 1 0.453033566474915 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045215 chrX:73045197 . . 0 39 hm5C_associated_SNPs_38611 0 0 1 1 0 unknown 1 0.500240413491263 1 0.999519173017475 hm5C_site_38040 DeepMRMD:1;iRNA_m5C:0.999519173017475 38041 chr12 52631305 52631305 1 + A G STAD 52631311 + 52631291 52631331 41 AGGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAA AGGTACGAAGATGAGATTAACCACCGCACAGCTGCTGAGAA < 41bp 1 0.0913740430345224 1 0.0405388474464417 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631311 chr12:52631305 synonymous SNV . 0 15 hm5C_associated_SNPs_38612 0 0 0 0 2 Cytosol 1 0.500231643015788 1 0.999536713968424 hm5C_site_38041 DeepMRMD:1;iRNA_m5C:0.999536713968424 38042 chr12 52631305 52631305 1 + A G STAD 52631312 + 52631292 52631332 41 GGTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAAT GGTACGAAGATGAGATTAACCACCGCACAGCTGCTGAGAAT < 41bp 1 0.690578866804071 1 0.322987496852875 experiment 0.618842266391857 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631312 chr12:52631305 synonymous SNV . 0 14 hm5C_associated_SNPs_38613 0 0 0 0 2 Cytosol 1 0.500231641493688 1 0.999536717012623 hm5C_site_38042 DeepMRMD:1;iRNA_m5C:0.999536717012623 38043 chr12 52631305 52631305 1 + A G STAD 52631314 + 52631294 52631334 41 TACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGA TACGAAGATGAGATTAACCACCGCACAGCTGCTGAGAATGA < 41bp 1 0.276651470094523 1 0.099734753370285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631314 chr12:52631305 synonymous SNV . 0 12 hm5C_associated_SNPs_38614 0 0 0 0 2 Cytosol 1 0.500231694545085 1 0.99953661090983 hm5C_site_38043 DeepMRMD:1;iRNA_m5C:0.99953661090983 38044 chr12 52631305 52631305 1 + A G STAD 52631315 + 52631295 52631335 41 ACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAG ACGAAGATGAGATTAACCACCGCACAGCTGCTGAGAATGAG < 41bp 1 0.155240333942527 1 0.154914230108261 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52631315 chr12:52631305 synonymous SNV . 0 11 hm5C_associated_SNPs_38615 0 0 0 0 2 Cytosol 1 0.500231643092821 1 0.999536713814359 hm5C_site_38044 DeepMRMD:1;iRNA_m5C:0.999536713814359 38045 chr7 92926147 92926147 1 + A T STAD 92926143 + 92926123 92926163 41 ATCTTTGTTTTGGATATAATCAGCAGGTAGTATTTAAGATC ATCTTTGTTTTGGATATAATCAGCTGGTAGTATTTAAGATC < 41bp 1 0.471865110628775 1 0.792846322059631 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92926143 chr7:92926147 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_38616 0 0 1 2 2 Cytosol 1 0.500231643921092 0.414307355880738 0.999536712157815 hm5C_site_38045 DeepMRMD:0.414307355880738;iRNA_m5C:0.999536712157815 38046 chr3 132244996 132244996 1 + A G STAD 132245004 + 132244984 132245024 41 GCTGTGTGTTCGAGCCATGGCATCTTTAGAGACCATTGGCC GCTGTGTGTTCGGGCCATGGCATCTTTAGAGACCATTGGCC < 41bp 1 0.200708449632996 1 0.126541256904602 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DNAJC13 ENSG00000138246 CDS Human protein_coding chr3:132245004 chr3:132244996 synonymous SNV . 0 13 hm5C_associated_SNPs_38617 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38046 DeepMRMD:1;iRNA_m5C:0.999536712157815 38047 chr1 65147712 65147712 1 + C T STAD 65147716 + 65147696 65147736 41 ACTCGGTTTATAGCTGCGGTCATCGAACGACATGCACACAG ACTCGGTTTATAGCTGTGGTCATCGAACGACATGCACACAG < 41bp 1 0.470299621975157 1 0.393672674894333 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65147716 chr1:65147712 nonsynonymous SNV 0.973 4 17 hm5C_associated_SNPs_38618 0 0 0 0 2 unknown 1 0.500231644155176 1 0.999536711689648 hm5C_site_38047 DeepMRMD:1;iRNA_m5C:0.999536711689648 38048 chr11 1009100 1009100 1 + G A STAD 1009111 + 1009091 1009131 41 TGCTGGCAGGTATGGGGGCACCTTCCAGAACGTGTCTGTGC TGCTGGCAGATATGGGGGCACCTTCCAGAACGTGTCTGTGC < 41bp 1 0.0108049015303122 1 0.0408118069171906 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:1009111 chr11:1009100 synonymous SNV . 0 10 hm5C_associated_SNPs_38619 0 0 1 0 1 Nucleus 1 0.500231643779083 1 0.999536712441834 hm5C_site_38048 DeepMRMD:1;iRNA_m5C:0.999536712441834 38049 chr11 57373905 57373905 1 + C T STAD 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA TCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA < 41bp 1 0.0213102996492289 1 0.0590977072715759 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373905 nonsynonymous SNV 0.003 1 1 hm5C_associated_SNPs_38620 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_38049 DeepMRMD:1;iRNA_m5C:0.999536712157815 38050 chr6 27101073 27101073 1 + A T STAD 27101054 + 27101034 27101074 41 GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACAA GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACTA < 41bp 1 0.55523331543453 1 0.56166410446167 experiment 0.889533369130939 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101054 chr6:27101073 stopgain 1.000 1 40 hm5C_associated_SNPs_38621 0 0 1 0 0 Ribosome 1 0.50023165042579 0.87667179107666 0.999536699148421 hm5C_site_38050 DeepMRMD:0.87667179107666;iRNA_m5C:0.999536699148421 38051 chr6 27101073 27101073 1 + A T STAD 27101062 + 27101042 27101082 41 GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC GGAACTGGCGGGCAACGCGGCCCGCGACAACTAGAAGACCC < 41bp 1 0.368209951976375 1 0.399787068367004 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101062 chr6:27101073 stopgain 1.000 1 32 hm5C_associated_SNPs_38622 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38051 DeepMRMD:1;iRNA_m5C:0.999536712157815 38052 chr6 27101073 27101073 1 + A T STAD 27101063 + 27101043 27101083 41 GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG GAACTGGCGGGCAACGCGGCCCGCGACAACTAGAAGACCCG < 41bp 1 0.340831447491489 1 0.151044368743896 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101063 chr6:27101073 stopgain 1.000 1 31 hm5C_associated_SNPs_38623 0 0 1 0 0 Ribosome 1 0.500231643918522 1 0.999536712162956 hm5C_site_38052 DeepMRMD:1;iRNA_m5C:0.999536712162956 38053 chr19 579629 579629 1 + C T STAD 579636 + 579616 579656 41 CTGAAGGAGGACGCGCTGCCCGGCCAGAAAACGGAGTTCAA CTGAAGGAGGACGTGCTGCCCGGCCAGAAAACGGAGTTCAA < 41bp 1 0.506107036691581 1 0.738250553607941 experiment 0.987785926616837 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:579636 chr19:579629 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_38624 0 0 1 0 1 Ribosome 1 0.500231643921092 0.523498892784118 0.999536712157815 hm5C_site_38053 DeepMRMD:0.523498892784118;iRNA_m5C:0.999536712157815 38054 chr22 17590501 17590501 1 + T C STAD 17590500 + 17590480 17590520 41 CAGTCTGACCAGGGCTACATCTCCAGGAGCTCCCCGCAGCC CAGTCTGACCAGGGCTACATCCCCAGGAGCTCCCCGCAGCC < 41bp 1 0.606796627931758 1 0.615346491336823 experiment 0.786406744136485 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control IL17RA ENSG00000177663 CDS Human protein_coding chr22:17590500 chr22:17590501 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_38626 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.769307017326354 0.999536712157815 hm5C_site_38054 DeepMRMD:0.769307017326354;iRNA_m5C:0.999536712157815 38055 chr16 87730240 87730240 1 + A G STAD 87730243 + 87730223 87730263 41 TCAACATCGGAGTCGCCATTCTGTTTATTAACTTTTTCATC TCAACATCGGAGTCGCCGTTCTGTTTATTAACTTTTTCATC < 41bp 1 0.095375591696727 1 0.165996879339218 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control JPH3 ENSG00000154118 CDS Human protein_coding chr16:87730243 chr16:87730240 nonsynonymous SNV 0.999 3 18 hm5C_associated_SNPs_38627 0 0 1 0 1 chromatin 1 0.50023164577061 1 0.99953670845878 hm5C_site_38055 DeepMRMD:1;iRNA_m5C:0.99953670845878 38056 chr15 22940764 22940764 1 + C A STAD 22940756 + 22940736 22940776 41 GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAG GCACATCCTCCGGCAGCAGCCCTCAGTAAAACATCTGCGAG < 41bp 1 0.377077205155769 1 0.314810454845428 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22940756 chr15:22940764 stopgain . 0 29 hm5C_associated_SNPs_38628 0 0 1 0 2 Cytosol 1 0.500231667586899 1 0.999536664826202 hm5C_site_38056 DeepMRMD:1;iRNA_m5C:0.999536664826202 38057 chr19 41758857 41758857 1 + C G STAD 41758850 + 41758830 41758870 41 ACACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAG ACACAGCTTCCTCCTCTATTCCCGGCTGGGGGACCAGCCAG < 41bp 1 0.634136732306204 1 0.387991338968277 experiment 0.731726535387592 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758850 chr19:41758857 synonymous SNV . 0 28 hm5C_associated_SNPs_38629 0 0 0 0 1 Nucleus 1 0.500231630917835 1 0.999536738164331 hm5C_site_38057 DeepMRMD:1;iRNA_m5C:0.999536738164331 38058 chr19 41758857 41758857 1 + C G STAD 41758851 + 41758831 41758871 41 CACAGCTTCCTCCTCTATTCCCGGCTCGGGGACCAGCCAGT CACAGCTTCCTCCTCTATTCCCGGCTGGGGGACCAGCCAGT < 41bp 1 0.216688956283286 1 0.171185731887817 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AXL ENSG00000167601 CDS Human protein_coding chr19:41758851 chr19:41758857 synonymous SNV . 0 27 hm5C_associated_SNPs_38630 0 0 0 0 1 Nucleus 1 0.500231643840631 1 0.999536712318738 hm5C_site_38058 DeepMRMD:1;iRNA_m5C:0.999536712318738 38059 chr5 10415649 10415649 1 + C A STAD 10415639 + 10415619 10415659 41 AATGTCGTTTTGGACGGGGACTGCCAAAATCCATGAGCTCT AATGTCGTTTTGGACGGGGACTGCCAAAATACATGAGCTCT < 41bp 1 0.229502781037194 1 0.331987142562866 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10415639 chr5:10415649 synonymous SNV . 0 31 hm5C_associated_SNPs_38631 0 0 1 0 1 Nucleus 1 0.500231643920809 1 0.999536712158382 hm5C_site_38059 DeepMRMD:1;iRNA_m5C:0.999536712158382 38060 chr19 5144277 5144277 1 + G A STAD 5144297 + 5144277 5144317 41 GTGTCCCTAGGCCAGGTGGTCATCACCAAGAACCGCAACGG ATGTCCCTAGGCCAGGTGGTCATCACCAAGAACCGCAACGG < 41bp 1 0.348690519797947 1 0.133119821548462 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5144297 chr19:5144277 nonsynonymous SNV 0.901 2 1 hm5C_associated_SNPs_38632 0 0 1 0 1 Cytosol 1 0.500231643989177 1 0.999536712021645 hm5C_site_38060 DeepMRMD:1;iRNA_m5C:0.999536712021645 38061 chr17 1636825 1636825 1 + C T STAD 1636828 + 1636808 1636848 41 CACTCCTATCCAGGTGACATCATCCGGAAAATCATCCCCAA CACTCCTATCCAGGTGATATCATCCGGAAAATCATCCCCAA < 41bp 1 0.169769612615576 1 0.523113906383514 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1636828 chr17:1636825 synonymous SNV . 0 18 hm5C_associated_SNPs_38633 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 0.953772187232972 0.999536712157815 hm5C_site_38061 DeepMRMD:0.953772187232972;iRNA_m5C:0.999536712157815 38062 chr6 7727469 7727469 1 + G A STAD 7727453 + 7727433 7727473 41 AGATCTTGTCGGTGCTGGGGCTCCCGCACCGGCCCCGGCCC AGATCTTGTCGGTGCTGGGGCTCCCGCACCGGCCCCAGCCC < 41bp 1 0.4446649810752 1 0.369366079568863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP6 ENSG00000153162 CDS Human protein_coding chr6:7727453 chr6:7727469 nonsynonymous SNV 0.910 4 37 hm5C_associated_SNPs_38634 0 0 0 0 0 Ribosome 1 0.500231677368014 1 0.999536645263972 hm5C_site_38062 DeepMRMD:1;iRNA_m5C:0.999536645263972 38063 chr16 50813911 50813911 1 + G A STAD 50813901 + 50813881 50813921 41 CCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC CCTCCTTTCTATGGGGTAATCCGTTGGATCAGTCAGCCACC < 41bp 1 0.346872364642034 1 0.311738133430481 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CYLD ENSG00000083799 CDS Human protein_coding chr16:50813901 chr16:50813911 nonsynonymous SNV 0.994 5 31 hm5C_associated_SNPs_38635 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38063 DeepMRMD:1;iRNA_m5C:0.999536712157815 38064 chr10 71243576 71243576 1 + G A STAD 71243594 + 71243574 71243614 41 TGGTCTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAAC TGATCTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAAC < 41bp 1 0.497614677579345 1 0.186168670654297 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243594 chr10:71243576 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_38637 0 0 1 0 1 Cytosol 1 0.500231643921459 1 0.999536712157081 hm5C_site_38064 DeepMRMD:1;iRNA_m5C:0.999536712157081 38065 chr20 2843946 2843946 1 + C T STAD 2843957 + 2843937 2843977 41 CTCGTGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATG CTCGTGTTGTGGAGACTTTACCCCCTGGCCATCCAGATATG < 41bp 1 0.26803805895955 1 0.0622218549251556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843957 chr20:2843946 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_38638 0 0 0 1 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38065 DeepMRMD:1;iRNA_m5C:0.999536712157815 38066 chr20 62904614 62904614 1 + C T STAD 62904609 + 62904589 62904629 41 GCAGCCTCCAGGACTTGGCTCGCATCGCCATCCGGGGCACC GCAGCCTCCAGGACTTGGCTCGCATTGCCATCCGGGGCACC < 41bp 1 0.448460591166355 1 0.0189490616321564 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62904609 chr20:62904614 synonymous SNV . 0 26 hm5C_associated_SNPs_38639 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_38066 DeepMRMD:1;iRNA_m5C:0.999536712157812 38067 chr19 45406424 45406424 1 + T C STAD 45406444 + 45406424 45406464 41 TGAGCCCTCCTGGCCCCCGCCTTCCACGCCCTTCCGATTCC CGAGCCCTCCTGGCCCCCGCCTTCCACGCCCTTCCGATTCC < 41bp 1 0.189349577123636 1 0.446806043386459 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOMM40 ENSG00000130204 CDS Human protein_coding chr19:45406444 chr19:45406424 stoploss 1.000 0 1 hm5C_associated_SNPs_38640 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38067 DeepMRMD:1;iRNA_m5C:0.999536712157815 38068 chr9 93624564 93624564 1 + G A STAD 93624554 + 93624534 93624574 41 CACGAAGGGAAGGTGCTGCACTATCGCATCGACAAAGACAA CACGAAGGGAAGGTGCTGCACTATCGCATCAACAAAGACAA < 41bp 1 0.203340919154624 1 0.0489352345466614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYK ENSG00000165025 CDS Human protein_coding chr9:93624554 chr9:93624564 nonsynonymous SNV 0.349 2 31 hm5C_associated_SNPs_38641 0 0 0 2 2 Cytosol 1 0.50024232490469 1 0.999515350190621 hm5C_site_38068 DeepMRMD:1;iRNA_m5C:0.999515350190621 38069 chr22 45580379 45580379 1 + C T STAD 45580373 + 45580353 45580393 41 TCTGATTCCACCCAATATGCCATGTACGCGAACAGGGAAGA TCTGATTCCACCCAATATGCCATGTATGCGAACAGGGAAGA < 41bp 1 0.214577259495943 1 0.0911376774311066 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP50 ENSG00000093000 CDS Human protein_coding chr22:45580373 chr22:45580379 nonsynonymous SNV 0.992 1 27 hm5C_associated_SNPs_38642 0 0 1 1 1 Ribosome 1 0.500231643951669 1 0.999536712096661 hm5C_site_38069 DeepMRMD:1;iRNA_m5C:0.999536712096661 38070 chr19 46519581 46519581 1 + C T STAD 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTTGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA < 41bp 1 0.234411205124265 1 0.34785470366478 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519581 nonsynonymous SNV 0.087 3 7 hm5C_associated_SNPs_38643 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38070 DeepMRMD:1;iRNA_m5C:0.999536712157815 38071 chr14 105352951 105352951 1 + C T STAD 105352950 + 105352930 105352970 41 CACCAAGGGCCCCCGGGGAGCCAACTCCCGCCTCTTTCTTC CACCAAGGGCCCCCGGGGAGCTAACTCCCGCCTCTTTCTTC < 41bp 1 0.123643182661743 1 0.0410560667514801 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105352950 chr14:105352951 nonsynonymous SNV 0.012 0 22 hm5C_associated_SNPs_38644 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38071 DeepMRMD:1;iRNA_m5C:0.999536712157815 38072 chr5 6746349 6746349 1 + G A STAD 6746347 + 6746327 6746367 41 TTGCATCCAAGAATTGATGCCCGGAGAGCTGATGAAAACCT TTGCATCCAAGAATTGATGCCCAGAGAGCTGATGAAAACCT < 41bp 1 0.290942253721533 1 0.213539361953735 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6746347 chr5:6746349 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_38645 0 0 1 0 1 Nucleus 1 0.500231643985062 1 0.999536712029876 hm5C_site_38072 DeepMRMD:1;iRNA_m5C:0.999536712029876 38073 chr19 55897997 55897997 1 + G C STAD 55898006 + 55897986 55898026 41 ATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCGACGG ATTCACCGCAACACTGTGGGCGTGGAGCCGGCAGCCGACGG < 41bp 1 0.647729125027336 1 0.49397748708725 experiment 0.704541749945327 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898006 chr19:55897997 nonsynonymous SNV 0.975 4 12 hm5C_associated_SNPs_38646 0 0 1 0 2 Cytosol 1 0.500231647559898 1 0.999536704880204 hm5C_site_38073 DeepMRMD:1;iRNA_m5C:0.999536704880204 38074 chr19 55897997 55897997 1 + G C STAD 55898017 + 55897997 55898037 41 GACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG CACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGTGTCG < 41bp 1 0.469760528516318 1 0.385560989379883 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55898017 chr19:55897997 nonsynonymous SNV 0.975 4 1 hm5C_associated_SNPs_38647 0 0 1 0 2 Cytosol 1 0.500231643921083 1 0.999536712157834 hm5C_site_38074 DeepMRMD:1;iRNA_m5C:0.999536712157834 38075 chr4 79437046 79437046 1 + C T STAD 79437053 + 79437033 79437073 41 AGCGTGCGAGAGCCGAAGACCATCCAGCTCTACAAACACCT AGCGTGCGAGAGCTGAAGACCATCCAGCTCTACAAACACCT < 41bp 1 0.0539214948105482 1 0.0865097045898438 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79437053 chr4:79437046 nonsynonymous SNV 0.660 0 14 hm5C_associated_SNPs_38648 0 0 1 0 1 Nucleus 1 0.500231571582299 1 0.999536856835401 hm5C_site_38075 DeepMRMD:1;iRNA_m5C:0.999536856835401 38076 chr10 102762439 102762439 1 + C T STAD 102762420 + 102762400 102762440 41 CCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCGCCACCACG CCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCGCCACCATG < 41bp 1 0.355030208803731 1 0.519209206104279 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102762420 chr10:102762439 synonymous SNV . 0 40 hm5C_associated_SNPs_38649 0 0 1 0 0 Ribosome 1 0.500231643921092 0.961581587791442 0.999536712157815 hm5C_site_38076 DeepMRMD:0.961581587791442;iRNA_m5C:0.999536712157815 38077 chr17 57771152 57771152 1 + G C STAD 57771132 + 57771112 57771152 41 GCAGGACCCAGTGTTGCCGTCCCTCCCCAGGCACCTTTTGG GCAGGACCCAGTGTTGCCGTCCCTCCCCAGGCACCTTTTGC < 41bp 1 0.0340789709471277 1 0.114349365234375 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57771132 chr17:57771152 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_38650 0 0 1 0 1 Nucleus 1 0.500231643886219 1 0.999536712227563 hm5C_site_38077 DeepMRMD:1;iRNA_m5C:0.999536712227563 38078 chr10 115661633 115661633 1 + G A STAD 115661651 + 115661631 115661671 41 TCGTAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCACT TCATAGGAGGAGAAAGAGACCCCATGGTAATGACAGTCACT < 41bp 1 0.247637247929065 1 0.20770388841629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661651 chr10:115661633 nonsynonymous SNV 0.825 1 3 hm5C_associated_SNPs_38653 0 0 1 0 1 Nucleus 1 0.500232057976344 1 0.999535884047312 hm5C_site_38078 DeepMRMD:1;iRNA_m5C:0.999535884047312 38079 chr19 54652128 54652128 1 + C A STAD 54652142 + 54652122 54652162 41 AGCTCCCAGTGGGCCCAGCACGACCCAGCCCCGGCCCCCCA AGCTCCAAGTGGGCCCAGCACGACCCAGCCCCGGCCCCCCA < 41bp 1 0.633727122578777 1 0.340846300125122 experiment 0.732545754842446 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54652142 chr19:54652128 synonymous SNV . 0 7 hm5C_associated_SNPs_38654 0 0 1 0 0 Ribosome 1 0.500231643932937 1 0.999536712134125 hm5C_site_38079 DeepMRMD:1;iRNA_m5C:0.999536712134125 38080 chr1 21771652 21771652 1 + G A STAD 21771644 + 21771624 21771664 41 AGGCCCTGATGTAGAAACTTCCCCATTCGGTGCACCAAGAG AGGCCCTGATGTAGAAACTTCCCCATTCAGTGCACCAAGAG < 41bp 1 0.441743876857967 1 0.208679109811783 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21771644 chr1:21771652 nonsynonymous SNV 0.000 1 29 hm5C_associated_SNPs_38655 0 0 1 0 1 nucleus 1 0.500231643884855 1 0.99953671223029 hm5C_site_38080 DeepMRMD:1;iRNA_m5C:0.99953671223029 38081 chr4 3319330 3319330 1 + C T STAD 3319346 + 3319326 3319366 41 TGTCCGGACCCCGAAGGGAGCCCCCCATTTGAGGCCGCTCA TGTCTGGACCCCGAAGGGAGCCCCCCATTTGAGGCCGCTCA < 41bp 1 0.0957241351342983 1 0.176879495382309 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3319346 chr4:3319330 nonsynonymous SNV 0.020 0 5 hm5C_associated_SNPs_38656 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38081 DeepMRMD:1;iRNA_m5C:0.999536712157815 38082 chr15 63073397 63073397 1 + T C STAD 63073407 + 63073387 63073427 41 CAGACGACTGTGGTTAAATACTCCAAAGCCATTGCGGTGAC CAGACGACTGCGGTTAAATACTCCAAAGCCATTGCGGTGAC < 41bp 1 0.646584502570349 1 0.980767130851746 experiment 0.706830994859301 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63073407 chr15:63073397 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_38657 0 0 0 0 2 Nucleus 1 0.500231688971692 0.0384657382965079 0.999536622056616 hm5C_site_38082 DeepMRMD:0.0384657382965079;iRNA_m5C:0.999536622056616 38083 chr8 145698104 145698104 1 + G A STAD 145698085 + 145698065 145698105 41 CCACCGCGCGCTCCAGGCACCGCAGGTACCACGGCCGGTGC CCACCGCGCGCTCCAGGCACCGCAGGTACCACGGCCGGTAC < 41bp 1 0.666602261713633 1 0.444697797298431 experiment 0.666795476572734 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145698085 chr8:145698104 nonsynonymous SNV . 0 40 hm5C_associated_SNPs_38658 0 0 0 0 0 nucleolus 1 0.500217881258003 1 0.999564237483994 hm5C_site_38083 DeepMRMD:1;iRNA_m5C:0.999564237483994 38084 chr3 41275088 41275088 1 + C A STAD 41275104 + 41275084 41275124 41 TCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT TCACATGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAAT < 41bp 1 0.115538518778384 1 0.303830355405807 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275104 chr3:41275088 synonymous SNV . 0 5 hm5C_associated_SNPs_38659 0 0 1 0 1 Nucleus 1 0.500231643929595 1 0.999536712140811 hm5C_site_38084 DeepMRMD:1;iRNA_m5C:0.999536712140811 38085 chr19 39219765 39219765 1 + G A STAD 39219773 + 39219753 39219793 41 GACCAGGTCATCGCTTCCTTCAAGGTCTTAGCAGGGGACAA GACCAGGTCATCACTTCCTTCAAGGTCTTAGCAGGGGACAA < 41bp 1 0.596496193522576 1 0.879628300666809 experiment 0.807007612954848 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219773 chr19:39219765 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_38660 0 0 1 0 1 Nucleus 1 0.500231642047194 0.240743398666382 0.999536715905611 hm5C_site_38085 DeepMRMD:0.240743398666382;iRNA_m5C:0.999536715905611 38086 chr9 125154761 125154761 1 + C T STAD 125154756 + 125154736 125154776 41 CAAGACCTGTCCCTACGTTTCCTTCCGTGTGCCGGATGCCA CAAGACCTGTCCCTACGTTTCCTTCTGTGTGCCGGATGCCA < 41bp 1 0.0221363297438598 1 0.0152914524078369 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125154756 chr9:125154761 nonsynonymous SNV 0.791 2 26 hm5C_associated_SNPs_38661 0 0 1 0 0 nucleolus 1 0.500231644146162 1 0.999536711707677 hm5C_site_38086 DeepMRMD:1;iRNA_m5C:0.999536711707677 38087 chr9 103002432 103002432 1 + G A STAD 103002451 + 103002431 103002471 41 CGTGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAA CATGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAA < 41bp 1 0.130550120468734 1 0.306302428245544 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103002451 chr9:103002432 nonsynonymous SNV 0.952 4 2 hm5C_associated_SNPs_38662 0 0 1 0 2 chromatin 1 0.500231645293543 1 0.999536709412913 hm5C_site_38087 DeepMRMD:1;iRNA_m5C:0.999536709412913 38088 chr6 168352326 168352326 1 + C T STAD 168352327 + 168352307 168352347 41 TGGTATGAGAAGGAGAAGGCCCGCCTGGAGGAGGAGCGGGA TGGTATGAGAAGGAGAAGGTCCGCCTGGAGGAGGAGCGGGA < 41bp 1 0.150990734860937 1 0.192751228809357 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout AFDN ENSG00000130396 CDS Human protein_coding chr6:168352327 chr6:168352326 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_38663 0 0 1 0 0 unknown 1 0.500231642088122 1 0.999536715823755 hm5C_site_38088 DeepMRMD:1;iRNA_m5C:0.999536715823755 38089 chr1 879297 879297 1 + C T STAD 879299 + 879279 879319 41 TCTCTGCAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGT TCTCTGCAGGTGGCCAGGTGCCTGGGCCGAGTTTTCTACGT < 41bp 1 0.534648587657421 1 0.490102797746658 experiment 0.930702824685158 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879299 chr1:879297 nonsynonymous SNV 0.992 4 19 hm5C_associated_SNPs_38664 0 0 0 0 2 nucleus 1 0.50022847366874 1 0.999543052662519 hm5C_site_38089 DeepMRMD:1;iRNA_m5C:0.999543052662519 38090 chr1 879297 879297 1 + C T STAD 879305 + 879285 879325 41 CAGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAG CAGGTGGCCAGGTGCCTGGGCCGAGTTTTCTACGTGGCCAG < 41bp 1 0.534460837238221 1 0.124000430107117 experiment 0.931078325523558 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879305 chr1:879297 nonsynonymous SNV 0.992 4 13 hm5C_associated_SNPs_38665 0 0 0 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38090 DeepMRMD:1;iRNA_m5C:0.999536712157815 38091 chr1 879297 879297 1 + C T STAD 879306 + 879286 879326 41 AGGTGGCCAGGCGCCTGGGCCGAGTTTTCTACGTGGCCAGC AGGTGGCCAGGTGCCTGGGCCGAGTTTTCTACGTGGCCAGC < 41bp 1 0.672253872324648 1 0.141072064638138 experiment 0.655492255350703 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:879306 chr1:879297 nonsynonymous SNV 0.992 4 12 hm5C_associated_SNPs_38666 0 0 0 0 2 nucleus 1 0.50023164394379 1 0.999536712112421 hm5C_site_38091 DeepMRMD:1;iRNA_m5C:0.999536712112421 38092 chr3 61975362 61975362 1 + C A STAD 61975349 + 61975329 61975369 41 CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGAC CTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCATATTGAC < 41bp 1 0.145642532034084 1 0.132719278335571 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:61975349 chr3:61975362 nonsynonymous SNV 0.997 5 34 hm5C_associated_SNPs_38667 0 0 1 0 1 Ribosome 1 0.500231645971175 1 0.99953670805765 hm5C_site_38092 DeepMRMD:1;iRNA_m5C:0.99953670805765 38093 chr14 100996336 100996336 1 + C T STAD 100996330 + 100996310 100996350 41 TATCACCCCGTGCTGCCCTCCGTCCTCGCCACCTGCTCCTG TATCACCCCGTGCTGCCCTCCGTCCTTGCCACCTGCTCCTG < 41bp 1 0.255942476042688 1 0.731877267360687 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100996330 chr14:100996336 synonymous SNV . 0 27 hm5C_associated_SNPs_38668 0 0 1 0 0 chromatin 1 0.500231643921092 0.536245465278626 0.999536712157815 hm5C_site_38093 DeepMRMD:0.536245465278626;iRNA_m5C:0.999536712157815 38094 chr17 41570258 41570258 1 + G A STAD 41570239 + 41570219 41570259 41 GGAGCAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACCGG GGAGCAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACCAG < 41bp 1 0.479344100341528 1 0.62048614025116 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570239 chr17:41570258 nonsynonymous SNV 0.994 0 40 hm5C_associated_SNPs_38669 0 0 1 0 0 Cytosol 1 0.500231643921092 0.75902771949768 0.999536712157815 hm5C_site_38094 DeepMRMD:0.75902771949768;iRNA_m5C:0.999536712157815 38095 chr17 41570258 41570258 1 + G A STAD 41570240 + 41570220 41570260 41 GAGCAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACCGGG GAGCAGGAGTCAGAGTCCCCCCAAAGACCGGAAGGACCAGG < 41bp 1 0.319713569923428 1 0.753945112228394 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570240 chr17:41570258 nonsynonymous SNV 0.994 0 39 hm5C_associated_SNPs_38670 0 0 1 0 0 Cytosol 1 0.50023047368153 0.492109775543212 0.99953905263694 hm5C_site_38095 DeepMRMD:0.492109775543212;iRNA_m5C:0.99953905263694 38096 chr20 62366609 62366609 1 + C T STAD 62366599 + 62366579 62366619 41 CTGGACCAGTGTGTGGAGACCCTGCAGAAGCAGACCAGGGT CTGGACCAGTGTGTGGAGACCCTGCAGAAGTAGACCAGGGT < 41bp 1 0.0584728383149286 1 0.417743444442749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62366599 chr20:62366609 stopgain 0.154 0 31 hm5C_associated_SNPs_38672 0 0 1 0 2 chromatin 1 0.500231729621967 1 0.999536540756067 hm5C_site_38096 DeepMRMD:1;iRNA_m5C:0.999536540756067 38097 chr4 178262744 178262744 1 + A T STAD 178262731 + 178262711 178262751 41 ACTGTGTGCCGCTTTGGGGACAATAACAGAATGACATATTT ACTGTGTGCCGCTTTGGGGACAATAACAGAATGTCATATTT < 41bp 1 0.429117986027535 1 0.149990439414978 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262731 chr4:178262744 nonsynonymous SNV 0.997 3 34 hm5C_associated_SNPs_38673 0 0 1 0 1 chromatin 1 0.500231643921091 1 0.999536712157819 hm5C_site_38097 DeepMRMD:1;iRNA_m5C:0.999536712157819 38098 chr4 178262744 178262744 1 + A T STAD 178262745 + 178262725 178262765 41 TGGGGACAATAACAGAATGACATATTTCTGTCCTCACTGTC TGGGGACAATAACAGAATGTCATATTTCTGTCCTCACTGTC < 41bp 1 0.170446920955981 1 0.0341855883598328 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178262745 chr4:178262744 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_38674 0 0 1 0 1 chromatin 1 0.500231622394605 1 0.999536755210791 hm5C_site_38098 DeepMRMD:1;iRNA_m5C:0.999536755210791 38099 chr2 113332867 113332867 1 + C T STAD 113332847 + 113332827 113332867 41 GAGAGGTTATATAGTGGCATCAGTGGGCTAGAACTGGAAGC GAGAGGTTATATAGTGGCATCAGTGGGCTAGAACTGGAAGT < 41bp 1 0.274452422545534 1 0.469116985797882 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113332847 chr2:113332867 nonsynonymous SNV 0.996 3 41 hm5C_associated_SNPs_38676 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_38099 DeepMRMD:1;iRNA_m5C:0.999536712157815 38100 chr22 51133315 51133315 1 + G A STAD 51133320 + 51133300 51133340 41 TATCAACCTGAAGGGGGAGGCACAGCCAGCAGCTTCTCCTG TATCAACCTGAAGGGAGAGGCACAGCCAGCAGCTTCTCCTG < 41bp 1 0.443490535959013 1 0.381201952695847 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51133320 chr22:51133315 synonymous SNV . 0 16 hm5C_associated_SNPs_38678 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38100 DeepMRMD:1;iRNA_m5C:0.999536712157815 38101 chr17 42426659 42426659 1 + C T STAD 42426663 + 42426643 42426683 41 CAGCTACAGCTGCTGCCGTCCCCTTCTGGTGAGTGCCCCTC CAGCTACAGCTGCTGCTGTCCCCTTCTGGTGAGTGCCCCTC < 41bp 1 0.120455048957343 1 0.0392272770404816 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42426663 chr17:42426659 nonsynonymous SNV 0.304 1 17 hm5C_associated_SNPs_38679 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164445458 1 0.999536711090841 hm5C_site_38101 DeepMRMD:1;iRNA_m5C:0.999536711090841 38102 chr17 42426659 42426659 1 + C T STAD 42426664 + 42426644 42426684 41 AGCTACAGCTGCTGCCGTCCCCTTCTGGTGAGTGCCCCTCA AGCTACAGCTGCTGCTGTCCCCTTCTGGTGAGTGCCCCTCA < 41bp 1 0.0822050596000531 1 0.261016637086868 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42426664 chr17:42426659 nonsynonymous SNV 0.304 1 16 hm5C_associated_SNPs_38680 0 0 1 0 1 Endoplasmic reticulum 1 0.500255631456721 1 0.999488737086558 hm5C_site_38102 DeepMRMD:1;iRNA_m5C:0.999488737086558 38103 chr9 95797867 95797867 1 + C T STAD 95797848 + 95797828 95797868 41 GGGCCCTGCAGCTTCAGGTCCCTATGGGCGCAGCTGCTCCG GGGCCCTGCAGCTTCAGGTCCCTATGGGCGCAGCTGCTCTG < 41bp 1 0.0714474597099298 1 0.0868118703365326 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGD3 ENSG00000127084 CDS Human protein_coding chr9:95797848 chr9:95797867 nonsynonymous SNV 0.008 1 40 hm5C_associated_SNPs_38683 0 0 0 0 0 exosome 1 0.500231643958969 1 0.999536712082062 hm5C_site_38103 DeepMRMD:1;iRNA_m5C:0.999536712082062 38104 chr19 45797677 45797677 1 + G A STAD 45797692 + 45797672 45797712 41 TGAGCGCCCGTCACTGTTGCCAAATGGGAAAGAAAACAGGT TGAGCACCCGTCACTGTTGCCAAATGGGAAAGAAAACAGGT < 41bp 1 0.231286551909823 1 0.843668103218079 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797692 chr19:45797677 nonsynonymous SNV 0.983 2 6 hm5C_associated_SNPs_38684 0 0 1 0 2 Nucleus 1 0.500231643921093 0.312663793563842 0.999536712157815 hm5C_site_38104 DeepMRMD:0.312663793563842;iRNA_m5C:0.999536712157815 38105 chr5 139909134 139909134 1 + A G STAD 139909148 + 139909128 139909168 41 TTTGCCACCTACATTTGGCCCAGCCACACTTTTCAATCACT TTTGCCGCCTACATTTGGCCCAGCCACACTTTTCAATCACT < 41bp 1 0.0610545801332628 1 0.0827454328536987 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139909148 chr5:139909134 synonymous SNV . 0 7 hm5C_associated_SNPs_38686 0 0 1 0 0 unknown 1 0.500231643921358 1 0.999536712157284 hm5C_site_38105 DeepMRMD:1;iRNA_m5C:0.999536712157284 38106 chr8 104343682 104343682 1 + A G STAD 104343665 + 104343645 104343685 41 CCAAGCAGCCTCAAAGGTTCCACATCTCTGCTTGTTCACCC CCAAGCAGCCTCAAAGGTTCCACATCTCTGCTTGTTCGCCC < 41bp 1 0.513623850371666 1 0.0462077856063843 experiment 0.972752299256668 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104343665 chr8:104343682 nonsynonymous SNV 0.726 0 38 hm5C_associated_SNPs_38687 0 0 1 0 0 Ribosome 1 0.500228511030472 1 0.999542977939056 hm5C_site_38106 DeepMRMD:1;iRNA_m5C:0.999542977939056 38107 chr22 38021856 38021856 1 + C T STAD 38021859 + 38021839 38021879 41 GATCTCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCAC GATCTCCCGCCTGCGGGTACCACCTACCCAGCTATGCCCAC < 41bp 1 0.418795907860588 1 0.166118651628494 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021859 chr22:38021856 synonymous SNV . 0 18 hm5C_associated_SNPs_38688 0 0 1 0 1 chromatin 1 0.500231666749688 1 0.999536666500624 hm5C_site_38107 DeepMRMD:1;iRNA_m5C:0.999536666500624 38108 chr3 136002741 136002741 1 + T C STAD 136002747 + 136002727 136002767 41 GGCCCATGTGCTGGTGGGGCCGTCTACTCCCCAGCCCTAAC GGCCCATGTGCTGGCGGGGCCGTCTACTCCCCAGCCCTAAC < 41bp 1 0.198817856699065 1 0.351216793060303 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCCB ENSG00000114054 CDS Human protein_coding chr3:136002747 chr3:136002741 synonymous SNV . 0 15 hm5C_associated_SNPs_38689 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_38108 DeepMRMD:1;iRNA_m5C:0.999536712157816 38109 chr6 138727163 138727163 1 + T C STAD 138727165 + 138727145 138727185 41 CGTGGAGCCTGGTTCAGGTCCTTTTAGTGAGTCTACCATTA CGTGGAGCCTGGTTCAGGCCCTTTTAGTGAGTCTACCATTA < 41bp 1 0.0945935166966293 1 0.030289500951767 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138727165 chr6:138727163 synonymous SNV . 0 19 hm5C_associated_SNPs_38690 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_38109 DeepMRMD:1;iRNA_m5C:0.999536712157815 38110 chr17 37359334 37359334 1 + C T STAD 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACTGT < 41bp 1 0.329819202213971 1 0.196842670440674 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359334 nonsynonymous SNV 0.308 1 39 hm5C_associated_SNPs_38691 0 0 1 0 2 chromatin 1 0.500231643921071 1 0.999536712157857 hm5C_site_38110 DeepMRMD:1;iRNA_m5C:0.999536712157857 38111 chr17 37359334 37359334 1 + C T STAD 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACTGTGAA < 41bp 1 0.333812985266208 1 0.0761534571647644 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359334 nonsynonymous SNV 0.308 1 36 hm5C_associated_SNPs_38692 0 0 1 0 2 chromatin 1 0.500231628737009 1 0.999536742525982 hm5C_site_38111 DeepMRMD:1;iRNA_m5C:0.999536742525982 38112 chr17 37359334 37359334 1 + C T STAD 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCTGCTCAGAAGATACTGTGAATCT < 41bp 1 0.495163420186631 1 0.111561059951782 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359334 nonsynonymous SNV 0.308 1 33 hm5C_associated_SNPs_38693 0 0 1 0 2 chromatin 1 0.500231629672839 1 0.999536740654322 hm5C_site_38112 DeepMRMD:1;iRNA_m5C:0.999536740654322 38113 chr17 37359334 37359334 1 + C T STAD 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAGAAGATACTGTGAATCTAAGAAGATCGA < 41bp 1 0.455185337595794 1 0.178947478532791 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359334 nonsynonymous SNV 0.308 1 22 hm5C_associated_SNPs_38694 0 0 1 0 2 chromatin 1 0.500231648966983 1 0.999536702066035 hm5C_site_38113 DeepMRMD:1;iRNA_m5C:0.999536702066035 38114 chr5 140573645 140573645 1 + A G STAD 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATCAGCGCGGACAACGGCCACCTGTTCGCCCTCAGGTC < 41bp 1 0.218835779121815 1 0.0925134122371674 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573645 nonsynonymous SNV 0.621 3 8 hm5C_associated_SNPs_38695 0 0 0 0 0 exosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_38114 DeepMRMD:1;iRNA_m5C:0.999536712157817 38115 chr8 11643661 11643661 1 + C T STAD 11643658 + 11643638 11643678 41 CTACCAGAAAGAACAGTGCCCTGCTGGCCACCAGGTCATGA CTACCAGAAAGAACAGTGCCCTGTTGGCCACCAGGTCATGA < 41bp 1 0.255253073516258 1 0.0209600925445557 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11643658 chr8:11643661 nonsynonymous SNV 0.092 0 24 hm5C_associated_SNPs_38697 0 0 1 0 0 Ribosome 1 0.500231643921052 1 0.999536712157897 hm5C_site_38115 DeepMRMD:1;iRNA_m5C:0.999536712157897 38116 chr20 35862431 35862431 1 + G C STAD 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCGCATTGGTGCCAATGTCTC < 41bp 1 0.319747809075747 1 0.184706062078476 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862431 synonymous SNV . 0 24 hm5C_associated_SNPs_38699 0 0 1 0 2 Ribosome 1 0.500231643921104 1 0.999536712157793 hm5C_site_38116 DeepMRMD:1;iRNA_m5C:0.999536712157793 38117 chr17 27027988 27027988 1 + G A STAD 27027991 + 27027971 27028011 41 CCAGCCCAGCAGCCAGTGGCCACACCACTAATGACCCCTAG CCAGCCCAGCAGCCAGTAGCCACACCACTAATGACCCCTAG < 41bp 1 0.323780128620954 1 0.350154936313629 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27027991 chr17:27027988 synonymous SNV . 0 18 hm5C_associated_SNPs_38701 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157811 hm5C_site_38117 DeepMRMD:1;iRNA_m5C:0.999536712157811 38118 chr3 49060165 49060165 1 + A T STAD 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAAGACTGCTTTTCCCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.3695692356408 1 0.119828552007675 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060165 nonsynonymous SNV 0.993 4 12 hm5C_associated_SNPs_38702 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38118 DeepMRMD:1;iRNA_m5C:0.999536712157815 38119 chr1 162725000 162725000 1 + C T STAD 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA TCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA < 41bp 1 0.46968991438904 1 0.797774851322174 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725000 nonsynonymous SNV 0.895 4 1 hm5C_associated_SNPs_38703 0 0 0 0 2 nucleolus 1 0.500231640086555 0.404450297355652 0.999536719826891 hm5C_site_38119 DeepMRMD:0.404450297355652;iRNA_m5C:0.999536719826891 38120 chr3 49060162 49060162 1 + G C STAD 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCGAACACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.31645556219798 1 0.138821959495544 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060162 nonsynonymous SNV 0.988 2 9 hm5C_associated_SNPs_38704 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_38120 DeepMRMD:1;iRNA_m5C:0.999536712157815 38121 chr1 214794185 214794185 1 + C A STAD 214794190 + 214794170 214794210 41 AACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAATAGGG AACAAGAGGTGACTCAAAGTCGATCAACTTTGCAAATAGGG < 41bp 1 0.0922275618256218 1 0.165259271860123 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794190 chr1:214794185 nonsynonymous SNV 0.009 3 16 hm5C_associated_SNPs_38706 0 0 1 0 0 Nucleus 1 0.50023164341073 1 0.999536713178541 hm5C_site_38121 DeepMRMD:1;iRNA_m5C:0.999536713178541 38122 chr5 156816266 156816266 1 + G A STAD 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCCATGTTCAAGGTCATCCTGAC < 41bp 1 0.277203437735171 1 0.689785838127136 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816266 nonsynonymous SNV 0.998 1 28 hm5C_associated_SNPs_38707 0 0 1 0 1 Cytosol 1 0.500231772896334 0.620428323745728 0.999536454207332 hm5C_site_38122 DeepMRMD:0.620428323745728;iRNA_m5C:0.999536454207332 38123 chr2 191524446 191524446 1 + G A STAD 191524463 + 191524443 191524483 41 CCCGCGTCCCCAAAGGAGAGCAGTGAGGCGCTGGATGCTGC CCCACGTCCCCAAAGGAGAGCAGTGAGGCGCTGGATGCTGC < 41bp 1 0.539058392158439 1 0.254702866077423 experiment 0.921883215683123 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAB1 ENSG00000138386 CDS Human protein_coding chr2:191524463 chr2:191524446 nonsynonymous SNV 0.844 1 4 hm5C_associated_SNPs_38708 0 0 1 0 0 Cytosol 1 0.500231643921095 1 0.99953671215781 hm5C_site_38123 DeepMRMD:1;iRNA_m5C:0.99953671215781 38124 chrX 102632690 102632690 1 + C T STAD 102632708 + 102632688 102632728 41 TGCGTATCCTTATGGGGGAGCTCTCTAATCACCATGACCAT TGTGTATCCTTATGGGGGAGCTCTCTAATCACCATGACCAT < 41bp 1 0.139372598177476 1 0.0493842959403992 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632708 chrX:102632690 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_38709 0 0 1 0 0 Cytosol 1 0.50023164392746 1 0.99953671214508 hm5C_site_38124 DeepMRMD:1;iRNA_m5C:0.99953671214508 38125 chr14 64628976 64628976 1 + A C STAD 64628971 + 64628951 64628991 41 ACAACCTGGCAGAGATCCTGCCCCCAGCCCTGCAGGACATA ACAACCTGGCAGAGATCCTGCCCCCCGCCCTGCAGGACATA < 41bp 1 0.0690209296265039 1 0.0405756831169128 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64628971 chr14:64628976 synonymous SNV . 0 26 hm5C_associated_SNPs_38711 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38125 DeepMRMD:1;iRNA_m5C:0.999536712157815 38126 chrX 47092439 47092439 1 + G A STAD 47092421 + 47092401 47092441 41 ATCTCGCACAGCTGCGTTGGCTGTAGAAGAGAACGGACGGC ATCTCGCACAGCTGCGTTGGCTGTAGAAGAGAACGGACAGC < 41bp 1 0.694107240228743 1 0.380794078111649 experiment 0.611785519542513 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47092421 chrX:47092439 synonymous SNV . 0 39 hm5C_associated_SNPs_38712 0 0 1 0 0 cytosol 1 0.500231644008943 1 0.999536711982113 hm5C_site_38126 DeepMRMD:1;iRNA_m5C:0.999536711982113 38127 chr9 135073611 135073611 1 + G A STAD 135073628 + 135073608 135073648 41 AACGGGCGCACCTGGCAGCCCTACCAGTTCTACGCCGAGGA AACAGGCGCACCTGGCAGCCCTACCAGTTCTACGCCGAGGA < 41bp 1 0.165109702706407 1 0.0820279121398926 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135073628 chr9:135073611 nonsynonymous SNV 1.000 5 4 hm5C_associated_SNPs_38713 0 0 0 0 0 exosome 1 0.500231643921091 1 0.999536712157819 hm5C_site_38127 DeepMRMD:1;iRNA_m5C:0.999536712157819 38128 chr4 3418745 3418745 1 + C T STAD 3418764 + 3418744 3418784 41 GCAGCAGGTCCCCAGCAGCCCGGCTTCCAAGCACAGCCTCG GTAGCAGGTCCCCAGCAGCCCGGCTTCCAAGCACAGCCTCG < 41bp 1 0.562003924763632 1 0.453533291816711 experiment 0.875992150472736 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3418764 chr4:3418745 stopgain 0.592 1 2 hm5C_associated_SNPs_38714 0 0 0 0 1 Nucleus 1 0.500231698627501 1 0.999536602744998 hm5C_site_38128 DeepMRMD:1;iRNA_m5C:0.999536602744998 38129 chr3 126725006 126725006 1 + G A STAD 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCGTCTTCTACAACTACAGCGTCCACCAGTC < 41bp 1 0.21153828636093 1 0.136605530977249 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126725006 nonsynonymous SNV 1.000 5 26 hm5C_associated_SNPs_38715 0 0 1 0 2 Ribosome 1 0.500231854624667 1 0.999536290750667 hm5C_site_38129 DeepMRMD:1;iRNA_m5C:0.999536290750667 38130 chr6 38029470 38029470 1 + T A STAD 38029468 + 38029448 38029488 41 CACCAGTGACAACAACAATACCTCGATAACCACGCCAACTC CACCAGTGACAACAACAATACCACGATAACCACGCCAACTC < 41bp 1 0.26020789508958 1 0.194863647222519 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFAND3 ENSG00000156639 CDS Human protein_coding chr6:38029468 chr6:38029470 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_38716 0 0 1 0 0 Cytosol 1 0.500232178350894 1 0.999535643298212 hm5C_site_38130 DeepMRMD:1;iRNA_m5C:0.999535643298212 38131 chr2 74154140 74154140 1 + G A STAD 74154149 + 74154129 74154169 41 GCCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAA GCCTGCACGCGAGGCGCGGGCCCCGAAGGCTCTCCATCGAA < 41bp 1 0.612427116297426 1 0.243247717618942 experiment 0.775145767405149 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DGUOK ENSG00000114956 CDS Human protein_coding chr2:74154149 chr2:74154140 nonsynonymous SNV 0.076 1 12 hm5C_associated_SNPs_38717 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38131 DeepMRMD:1;iRNA_m5C:0.999536712157815 38132 chr12 52636839 52636839 1 + T C STAD 52636840 + 52636820 52636860 41 GGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGAT GGGAAGCATGGGGACGACCCCCGGAATACCCGGAATGAGAT < 41bp 1 0.5619248287244 1 0.69479513168335 experiment 0.8761503425512 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636840 chr12:52636839 nonsynonymous SNV 0.256 2 20 hm5C_associated_SNPs_38720 0 0 0 0 2 Cytosol 1 0.500231594564505 0.6104097366333 0.999536810870989 hm5C_site_38132 DeepMRMD:0.6104097366333;iRNA_m5C:0.999536810870989 38133 chr12 52636839 52636839 1 + T C STAD 52636841 + 52636821 52636861 41 GGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATT GGAAGCATGGGGACGACCCCCGGAATACCCGGAATGAGATT < 41bp 1 0.649865002761624 1 0.858032941818237 experiment 0.700269994476753 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KRT7 ENSG00000135480 CDS Human protein_coding chr12:52636841 chr12:52636839 nonsynonymous SNV 0.256 2 19 hm5C_associated_SNPs_38721 0 0 0 0 2 Cytosol 1 0.500231643921092 0.283934116363526 0.999536712157815 hm5C_site_38133 DeepMRMD:0.283934116363526;iRNA_m5C:0.999536712157815 38134 chr5 172315753 172315753 1 + C T STAD 172315759 + 172315739 172315779 41 CAGCCAACGTACACCGGGGCCATTAGTGAGTAGCCAACCTC CAGCCAACGTACACTGGGGCCATTAGTGAGTAGCCAACCTC < 41bp 1 0.162684806011678 1 0.0571464598178864 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172315759 chr5:172315753 synonymous SNV . 0 15 hm5C_associated_SNPs_38722 0 0 1 0 2 Cytosol 1 0.500231643921328 1 0.999536712157344 hm5C_site_38134 DeepMRMD:1;iRNA_m5C:0.999536712157344 38135 chr15 69652454 69652454 1 + T C STAD 69652440 + 69652420 69652460 41 ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCA ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCACAGACCA < 41bp 1 0.666179189191116 1 0.816994249820709 experiment 0.667641621617768 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652440 chr15:69652454 nonsynonymous SNV 0.198 2 35 hm5C_associated_SNPs_38724 0 0 0 0 1 Cytosol 1 0.500231643921204 0.366011500358582 0.999536712157592 hm5C_site_38135 DeepMRMD:0.366011500358582;iRNA_m5C:0.999536712157592 38136 chr17 27011920 27011920 1 + C T STAD 27011913 + 27011893 27011933 41 GGTGAAGGAGAAGTGACAGACTTCCTTCGACTGCCCCATTT GGTGAAGGAGAAGTGACAGACTTCCTTTGACTGCCCCATTT < 41bp 1 0.369657961655149 1 0.121444791555405 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011913 chr17:27011920 stopgain 0.958 1 28 hm5C_associated_SNPs_38725 0 0 1 0 1 Cytosol 1 0.50022657536996 1 0.999546849260079 hm5C_site_38136 DeepMRMD:1;iRNA_m5C:0.999546849260079 38137 chr17 27011920 27011920 1 + C T STAD 27011928 + 27011908 27011948 41 ACAGACTTCCTTCGACTGCCCCATTTTACCAAACGGCGAAC ACAGACTTCCTTTGACTGCCCCATTTTACCAAACGGCGAAC < 41bp 1 0.0758811253044482 1 0.076342910528183 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011928 chr17:27011920 stopgain 0.958 1 13 hm5C_associated_SNPs_38726 0 0 1 0 1 Cytosol 1 0.500231643818719 1 0.999536712362562 hm5C_site_38137 DeepMRMD:1;iRNA_m5C:0.999536712362562 38138 chr3 50614571 50614571 1 + G A STAD 50614569 + 50614549 50614589 41 CCCCTCATTCTGGAGGTGGGCTGCGGATCAGGAGCCATCTC CCCCTCATTCTGGAGGTGGGCTACGGATCAGGAGCCATCTC < 41bp 1 0.59196780381498 1 0.0826593041419983 experiment 0.816064392370039 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614569 chr3:50614571 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_38727 0 0 0 0 2 Ribosome 1 0.500232367464354 1 0.999535265071292 hm5C_site_38138 DeepMRMD:1;iRNA_m5C:0.999535265071292 38139 chr7 99701287 99701287 1 + G A STAD 99701304 + 99701284 99701324 41 GCCGCCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA GCCACCCCGTCCTGTCCAGTCGCTCTGACCAGGTGAGGGAA < 41bp 1 0.446804242137339 1 0.371312946081161 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701304 chr7:99701287 nonsynonymous SNV 0.997 4 4 hm5C_associated_SNPs_38729 0 0 1 0 2 Cytosol 1 0.500230769359495 1 0.999538461281011 hm5C_site_38139 DeepMRMD:1;iRNA_m5C:0.999538461281011 38140 chr15 40509698 40509698 1 + A G STAD 40509700 + 40509680 40509720 41 CTTAAATCTGGGCTCAGAATCCACGATCCCTATGATTGTAA CTTAAATCTGGGCTCAGAGTCCACGATCCCTATGATTGTAA < 41bp 1 0.125128170371081 1 0.1215760409832 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BUB1B ENSG00000156970 CDS Human protein_coding chr15:40509700 chr15:40509698 nonsynonymous SNV 0.999 3 19 hm5C_associated_SNPs_38730 0 0 1 0 1 Nucleus 1 0.500231780052364 1 0.999536439895271 hm5C_site_38140 DeepMRMD:1;iRNA_m5C:0.999536439895271 38141 chr6 168265408 168265408 1 + G C STAD 168265414 + 168265394 168265434 41 AGTATTCACTCTATGAAGTGCATGTCAGCGGAGGTCAGTGT AGTATTCACTCTATCAAGTGCATGTCAGCGGAGGTCAGTGT < 41bp 1 0.0893218735574598 1 0.041837602853775 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168265414 chr6:168265408 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_38732 0 0 1 0 0 unknown 1 0.500231330260417 1 0.999537339479166 hm5C_site_38141 DeepMRMD:1;iRNA_m5C:0.999537339479166 38142 chr16 12662459 12662459 1 + C T STAD 12662443 + 12662423 12662463 41 CAAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGG CAAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAATGTGG < 41bp 1 0.312056712565027 1 0.561266660690308 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662443 chr16:12662459 synonymous SNV . 0 37 hm5C_associated_SNPs_38733 0 0 0 0 1 Nucleus 1 0.500231643921092 0.877466678619384 0.999536712157816 hm5C_site_38142 DeepMRMD:0.877466678619384;iRNA_m5C:0.999536712157816 38143 chr16 12662459 12662459 1 + C T STAD 12662444 + 12662424 12662464 41 AAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGA AAACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAATGTGGA < 41bp 1 0.179653703439244 1 0.855356216430664 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662444 chr16:12662459 synonymous SNV . 0 36 hm5C_associated_SNPs_38734 0 0 0 0 1 Nucleus 1 0.500231643920995 0.289287567138672 0.99953671215801 hm5C_site_38143 DeepMRMD:0.289287567138672;iRNA_m5C:0.99953671215801 38144 chr16 12662459 12662459 1 + C T STAD 12662445 + 12662425 12662465 41 AACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGAG AACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAATGTGGAG < 41bp 1 0.672010849232394 1 0.835638880729675 experiment 0.655978301535213 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12662445 chr16:12662459 synonymous SNV . 0 35 hm5C_associated_SNPs_38735 0 0 0 0 1 Nucleus 1 0.50023164392109 0.32872223854065 0.99953671215782 hm5C_site_38144 DeepMRMD:0.32872223854065;iRNA_m5C:0.99953671215782 38145 chr12 111884628 111884628 1 + G A STAD 111884617 + 111884597 111884637 41 AGGAGGTCCGGTGGTGCACACGGCTTGAGATGCCTGACAAC AGGAGGTCCGGTGGTGCACACGGCTTGAGATACCTGACAAC < 41bp 1 0.585382615306177 1 0.592601597309113 experiment 0.829234769387647 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH2B3 ENSG00000111252 CDS Human protein_coding chr12:111884617 chr12:111884628 nonsynonymous SNV 0.994 4 32 hm5C_associated_SNPs_38736 0 0 1 0 1 Ribosome 1 0.500231863391133 0.814796805381774 0.999536273217734 hm5C_site_38145 DeepMRMD:0.814796805381774;iRNA_m5C:0.999536273217734 38146 chr8 42829324 42829324 1 + G T TGCT 42829322 + 42829302 42829342 41 GTGTACAAGCTCAAGAAGGGCAGCTCACAACACAAGGTAAA GTGTACAAGCTCAAGAAGGGCATCTCACAACACAAGGTAAA < 41bp 1 0.0429081232895255 1 0.081483006477356 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HOOK3 ENSG00000168172 CDS Human protein_coding chr8:42829322 chr8:42829324 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_38737 0 0 1 0 2 Ribosome 1 0.500231667080468 1 0.999536665839064 hm5C_site_38146 DeepMRMD:1;iRNA_m5C:0.999536665839064 38147 chr8 104438341 104438341 1 + G T TGCT 104438331 + 104438311 104438351 41 TGGAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCC TGGAAAATGGATGGGCCAGGCTATGGAGACTAGGAAGAGCC < 41bp 1 0.492409402911736 1 0.2547707259655 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438331 chr8:104438341 stopgain 0.988 1 31 hm5C_associated_SNPs_38738 0 0 1 0 2 Nucleus 1 0.50023164391078 1 0.99953671217844 hm5C_site_38147 DeepMRMD:1;iRNA_m5C:0.99953671217844 38148 chr17 42427035 42427035 1 + G T TGCT 42427030 + 42427010 42427050 41 ATGCAGGTTTCTCTGTGTTCCACAGGCCGTGGCATGCGGGG ATGCAGGTTTCTCTGTGTTCCACAGTCCGTGGCATGCGGGG < 41bp 1 0.555203505765947 1 0.552425622940063 experiment 0.889592988468107 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42427030 chr17:42427035 nonsynonymous SNV 0.170 2 26 hm5C_associated_SNPs_38739 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643955329 0.895148754119874 0.999536712089342 hm5C_site_38148 DeepMRMD:0.895148754119874;iRNA_m5C:0.999536712089342 38149 chr15 41854893 41854893 1 + C T TGCT 41854884 + 41854864 41854904 41 AACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTT AACTACGAAGATCGGGGGACCCGCTCCCTTTCCATCTGTTT < 41bp 1 0.0474531130192372 1 0.122664093971252 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854884 chr15:41854893 nonsynonymous SNV 0.999 1 30 hm5C_associated_SNPs_38740 0 0 0 0 1 Ribosome 1 0.500231649755939 1 0.999536700488123 hm5C_site_38149 DeepMRMD:1;iRNA_m5C:0.999536700488123 38150 chr15 41854893 41854893 1 + C T TGCT 41854885 + 41854865 41854905 41 ACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTTT ACTACGAAGATCGGGGGACCCGCTCCCTTTCCATCTGTTTT < 41bp 1 0.147281054912392 1 0.0838261246681213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854885 chr15:41854893 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_38741 0 0 0 0 1 Ribosome 1 0.500231681699303 1 0.999536636601394 hm5C_site_38150 DeepMRMD:1;iRNA_m5C:0.999536636601394 38151 chr10 8006560 8006560 1 + C T TGCT 8006576 + 8006556 8006596 41 AATACAGACACCCCCTGATGCTGGGAAACTGAACAGTGAGA AATATAGACACCCCCTGATGCTGGGAAACTGAACAGTGAGA < 41bp 1 0.476007164854038 1 0.498090535402298 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TAF3 ENSG00000165632 CDS Human protein_coding chr10:8006576 chr10:8006560 stopgain 0.024 0 5 hm5C_associated_SNPs_38742 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38151 DeepMRMD:1;iRNA_m5C:0.999536712157815 38152 chr12 112579948 112579948 1 + T G TGCT 112579938 + 112579918 112579958 41 GAATAGAGGCCAACAGCCCCCCAAAGAGGGTGGTGAAGAGA GAATAGAGGCCAACAGCCCCCCAAAGAGGGGGGTGAAGAGA < 41bp 1 0.323310441939123 1 0.452161818742752 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112579938 chr12:112579948 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_38743 0 0 0 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38152 DeepMRMD:1;iRNA_m5C:0.999536712157815 38153 chr19 5667167 5667167 1 + T C TGCT 5667169 + 5667149 5667189 41 GGGCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACA GGGCCGGGGGCTGCCTCCCCCCCCCAGGTTTGTGTCCCACA < 41bp 1 0.232297384702153 1 0.324173271656036 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667169 chr19:5667167 synonymous SNV . 0 19 hm5C_associated_SNPs_38744 0 0 1 0 1 chromatin 1 0.500231643921737 1 0.999536712156526 hm5C_site_38153 DeepMRMD:1;iRNA_m5C:0.999536712156526 38154 chr19 5667167 5667167 1 + T C TGCT 5667171 + 5667151 5667191 41 GCCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACC GCCGGGGGCTGCCTCCCCCCCCCAGGTTTGTGTCCCACACC < 41bp 1 0.485236352555845 1 0.185346037149429 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667171 chr19:5667167 synonymous SNV . 0 17 hm5C_associated_SNPs_38746 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38154 DeepMRMD:1;iRNA_m5C:0.999536712157815 38155 chr19 5667167 5667167 1 + T C TGCT 5667172 + 5667152 5667192 41 CCGGGGGCTGCCTCCTCCCCCCAGGTTTGTGTCCCACACCC CCGGGGGCTGCCTCCCCCCCCCAGGTTTGTGTCCCACACCC < 41bp 1 0.628191582883737 1 0.61762261390686 experiment 0.743616834232526 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SAFB ENSG00000160633 CDS Human protein_coding chr19:5667172 chr19:5667167 synonymous SNV . 0 16 hm5C_associated_SNPs_38747 0 0 1 0 1 chromatin 1 0.500231646526248 0.76475477218628 0.999536706947505 hm5C_site_38155 DeepMRMD:0.76475477218628;iRNA_m5C:0.999536706947505 38156 chr11 831648 831648 1 + G A TGCT 831668 + 831648 831688 41 GCTGCTGTTGCTGGGCTCGGCCCCCCAGACGCGGCTCTGGC ACTGCTGTTGCTGGGCTCGGCCCCCCAGACGCGGCTCTGGC < 41bp 1 0.207260036016979 1 0.159077793359756 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831668 chr11:831648 nonsynonymous SNV 0.974 2 1 hm5C_associated_SNPs_38749 0 0 1 0 0 Cytosol 1 0.500231643870663 1 0.999536712258673 hm5C_site_38156 DeepMRMD:1;iRNA_m5C:0.999536712258673 38157 chr5 149754707 149754707 1 + C T TGCT 149754724 + 149754704 149754744 41 TGGCAGCCATGAATGCAGCTCAGGTGAGGCTGGAAGCCGCC TGGTAGCCATGAATGCAGCTCAGGTGAGGCTGGAAGCCGCC < 41bp 1 0.488372738452455 1 0.437227040529251 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754724 chr5:149754707 nonsynonymous SNV 0.016 0 4 hm5C_associated_SNPs_38750 0 0 1 0 1 Nucleus 1 0.500231643921106 1 0.999536712157788 hm5C_site_38157 DeepMRMD:1;iRNA_m5C:0.999536712157788 38158 chr10 94773973 94773973 1 + G T TGCT 94773982 + 94773962 94774002 41 TCTGAGCCTGTGCCAGGATTCCAGGGGGATACCCTGCAGCT TCTGAGCCTGTTCCAGGATTCCAGGGGGATACCCTGCAGCT < 41bp 1 0.654619669928617 1 0.858836054801941 experiment 0.690760660142766 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94773982 chr10:94773973 synonymous SNV . 0 12 hm5C_associated_SNPs_38751 0 0 1 0 1 Cytosol 1 0.500231643921092 0.282327890396118 0.999536712157815 hm5C_site_38158 DeepMRMD:0.282327890396118;iRNA_m5C:0.999536712157815 38159 chr2 220503458 220503458 1 + T C TGCT 220503474 + 220503454 220503494 41 GACCTCTCCCGATAAGCGCTCGTGGTTCATCCCACCCCTGG GACCCCTCCCGATAAGCGCTCGTGGTTCATCCCACCCCTGG < 41bp 1 0.524273158567172 1 0.799090981483459 experiment 0.951453682865656 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503474 chr2:220503458 nonsynonymous SNV 0.853 2 5 hm5C_associated_SNPs_38752 0 0 0 0 1 Cytosol 1 0.500231643920992 0.401818037033082 0.999536712158015 hm5C_site_38159 DeepMRMD:0.401818037033082;iRNA_m5C:0.999536712158015 38160 chr16 1703072 1703072 1 + C A TGCT 1703054 + 1703034 1703074 41 GCTTGAGTGATGAAGAGGACCAGAAGCCAGTGCGCCTGCCT GCTTGAGTGATGAAGAGGACCAGAAGCCAGTGCGCCTGACT < 41bp 1 0.539373869709229 1 0.721439599990845 experiment 0.921252260581543 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1703054 chr16:1703072 nonsynonymous SNV 0.953 2 39 hm5C_associated_SNPs_38753 0 0 1 0 2 chromatin 1 0.500231643934787 0.55712080001831 0.999536712130425 hm5C_site_38160 DeepMRMD:0.55712080001831;iRNA_m5C:0.999536712130425 38161 chrX 19373827 19373827 1 + C T TGCT 19373838 + 19373818 19373858 41 TATCCTGTGCGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT TATCCTGTGTGTCCGAGAGGCAACAAGGTTTGCTGCTGCCT < 41bp 1 0.612279076704734 1 0.359048783779144 experiment 0.775441846590533 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373838 chrX:19373827 synonymous SNV . 0 10 hm5C_associated_SNPs_38754 0 0 1 0 2 Ribosome 1 0.500231644507112 1 0.999536710985776 hm5C_site_38161 DeepMRMD:1;iRNA_m5C:0.999536710985776 38162 chr8 110569202 110569202 1 + C A TGCT 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATACCA < 41bp 1 0.0324512315411791 1 0.102491855621338 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569202 synonymous SNV . 0 38 hm5C_associated_SNPs_38755 0 0 1 0 2 Ribosome 1 0.500244896592359 1 0.999510206815283 hm5C_site_38162 DeepMRMD:1;iRNA_m5C:0.999510206815283 38163 chr5 167943865 167943865 1 + G A TGCT 167943878 + 167943858 167943898 41 CATAACCGGTTGAATGACTACATCTTCTCCTTTGACAAAAT CATAACCAGTTGAATGACTACATCTTCTCCTTTGACAAAAT < 41bp 1 0.173012317327222 1 0.0913183093070984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943878 chr5:167943865 nonsynonymous SNV 0.958 4 8 hm5C_associated_SNPs_38756 1 0 1 0 2 Nucleus 1 0.500231643226569 1 0.999536713546862 hm5C_site_38163 DeepMRMD:1;iRNA_m5C:0.999536713546862 Leukodystrophy, hypomyelinating, 9 Leukodystrophy, hypomyelinating, 9 38164 chr9 135946966 135946966 1 + C A TGCT 135946953 + 135946933 135946973 41 CCGCCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCAC CCGCCCACGGGTGACTCCGGCGCCCCCCCCGTGACGCCCAC < 41bp 1 0.505115662280952 1 0.747992992401123 experiment 0.989768675438097 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946953 chr9:135946966 nonsynonymous SNV 0.001 3 34 hm5C_associated_SNPs_38759 0 0 0 0 0 exosome 1 0.500231643948876 0.504014015197754 0.999536712102248 hm5C_site_38164 DeepMRMD:0.504014015197754;iRNA_m5C:0.999536712102248 38165 chr9 135946966 135946966 1 + C A TGCT 135946955 + 135946935 135946975 41 GCCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGG GCCCACGGGTGACTCCGGCGCCCCCCCCGTGACGCCCACGG < 41bp 1 0.247853812273491 1 0.134040147066116 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946955 chr9:135946966 nonsynonymous SNV 0.001 3 32 hm5C_associated_SNPs_38760 0 0 0 0 0 exosome 1 0.500231658536227 1 0.999536682927546 hm5C_site_38165 DeepMRMD:1;iRNA_m5C:0.999536682927546 38166 chr9 135946966 135946966 1 + C A TGCT 135946956 + 135946936 135946976 41 CCCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGG CCCACGGGTGACTCCGGCGCCCCCCCCGTGACGCCCACGGG < 41bp 1 0.217507411372513 1 0.0660406947135925 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946956 chr9:135946966 nonsynonymous SNV 0.001 3 31 hm5C_associated_SNPs_38761 0 0 0 0 0 exosome 1 0.500320899720014 1 0.999358200559973 hm5C_site_38166 DeepMRMD:1;iRNA_m5C:0.999358200559973 38167 chr9 135946966 135946966 1 + C A TGCT 135946957 + 135946937 135946977 41 CCACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGT CCACGGGTGACTCCGGCGCCCCCCCCGTGACGCCCACGGGT < 41bp 1 0.245553768359058 1 0.0838296115398407 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946957 chr9:135946966 nonsynonymous SNV 0.001 3 30 hm5C_associated_SNPs_38762 0 0 0 0 0 exosome 1 0.500231697403861 1 0.999536605192278 hm5C_site_38167 DeepMRMD:1;iRNA_m5C:0.999536605192278 38168 chr9 135946966 135946966 1 + C A TGCT 135946958 + 135946938 135946978 41 CACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTG CACGGGTGACTCCGGCGCCCCCCCCGTGACGCCCACGGGTG < 41bp 1 0.280155737767626 1 0.143771201372147 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946958 chr9:135946966 nonsynonymous SNV 0.001 3 29 hm5C_associated_SNPs_38763 0 0 0 0 0 exosome 1 0.500231708002593 1 0.999536583994814 hm5C_site_38168 DeepMRMD:1;iRNA_m5C:0.999536583994814 38169 chr9 135946966 135946966 1 + C A TGCT 135946959 + 135946939 135946979 41 ACGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGA ACGGGTGACTCCGGCGCCCCCCCCGTGACGCCCACGGGTGA < 41bp 1 0.649671990620378 1 0.482660800218582 experiment 0.700656018759244 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946959 chr9:135946966 nonsynonymous SNV 0.001 3 28 hm5C_associated_SNPs_38764 0 0 0 0 0 exosome 1 0.500232128846818 1 0.999535742306363 hm5C_site_38169 DeepMRMD:1;iRNA_m5C:0.999535742306363 38170 chr9 135946966 135946966 1 + C A TGCT 135946960 + 135946940 135946980 41 CGGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGAC CGGGTGACTCCGGCGCCCCCCCCGTGACGCCCACGGGTGAC < 41bp 1 0.508885281770847 1 0.351962953805923 experiment 0.982229436458306 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946960 chr9:135946966 nonsynonymous SNV 0.001 3 27 hm5C_associated_SNPs_38765 0 0 0 0 0 exosome 1 0.500255949597114 1 0.999488100805772 hm5C_site_38170 DeepMRMD:1;iRNA_m5C:0.999488100805772 38171 chr9 135946966 135946966 1 + C A TGCT 135946961 + 135946941 135946981 41 GGGTGACTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACT GGGTGACTCCGGCGCCCCCCCCGTGACGCCCACGGGTGACT < 41bp 1 0.348695201379491 1 0.498624175786972 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946961 chr9:135946966 nonsynonymous SNV 0.001 3 26 hm5C_associated_SNPs_38766 0 0 0 0 0 exosome 1 0.500232042420414 1 0.999535915159172 hm5C_site_38171 DeepMRMD:1;iRNA_m5C:0.999535915159172 38172 chr9 135946966 135946966 1 + C A TGCT 135946967 + 135946947 135946987 41 CTCCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGG CTCCGGCGCCCCCCCCGTGACGCCCACGGGTGACTCCGGGG < 41bp 1 0.519019394803495 1 0.122573792934418 experiment 0.96196121039301 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946967 chr9:135946966 nonsynonymous SNV 0.001 3 20 hm5C_associated_SNPs_38768 0 0 0 0 0 exosome 1 0.500231641792146 1 0.999536716415707 hm5C_site_38172 DeepMRMD:1;iRNA_m5C:0.999536716415707 38173 chr9 135946966 135946966 1 + C A TGCT 135946969 + 135946949 135946989 41 CCGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCC CCGGCGCCCCCCCCGTGACGCCCACGGGTGACTCCGGGGCC < 41bp 1 0.292959894969709 1 0.0863156318664551 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946969 chr9:135946966 nonsynonymous SNV 0.001 3 18 hm5C_associated_SNPs_38769 0 0 0 0 0 exosome 1 0.50022111357492 1 0.99955777285016 hm5C_site_38173 DeepMRMD:1;iRNA_m5C:0.99955777285016 38174 chr9 135946966 135946966 1 + C A TGCT 135946970 + 135946950 135946990 41 CGGCGCCCCCCCCGTGCCGCCCACGGGTGACTCCGGGGCCC CGGCGCCCCCCCCGTGACGCCCACGGGTGACTCCGGGGCCC < 41bp 1 0.504588863984424 1 0.228080302476883 experiment 0.990822272031151 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135946970 chr9:135946966 nonsynonymous SNV 0.001 3 17 hm5C_associated_SNPs_38770 0 0 0 0 0 exosome 1 0.500231643921508 1 0.999536712156984 hm5C_site_38174 DeepMRMD:1;iRNA_m5C:0.999536712156984 38175 chr17 80680735 80680735 1 + G T TGCT 80680754 + 80680734 80680774 41 TGGTGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG TTGTGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG < 41bp 1 0.447870161623369 1 0.73688530921936 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680754 chr17:80680735 synonymous SNV . 0 2 hm5C_associated_SNPs_38771 0 0 1 0 2 Ribosome 1 0.500231643920713 0.52622938156128 0.999536712158574 hm5C_site_38175 DeepMRMD:0.52622938156128;iRNA_m5C:0.999536712158574 38176 chr16 1818243 1818243 1 + G A TGCT 1818253 + 1818233 1818273 41 CCCGTCCCGGGGGCATCATCCACGTGTATGGCGATGACAGC CCCGTCCCGGAGGCATCATCCACGTGTATGGCGATGACAGC < 41bp 1 0.493198905428742 1 0.514560401439667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1818253 chr16:1818243 synonymous SNV . 0 11 hm5C_associated_SNPs_38772 0 0 1 0 1 chromatin 1 0.500232719360999 0.970879197120666 0.999534561278002 hm5C_site_38176 DeepMRMD:0.970879197120666;iRNA_m5C:0.999534561278002 38177 chr15 52353621 52353621 1 + C T TGCT 52353617 + 52353597 52353637 41 ATGGATGAGCCAATTTCAAGCCATCCTTTTCATATTGAAGA ATGGATGAGCCAATTTCAAGCCATTCTTTTCATATTGAAGA < 41bp 1 0.0497247496860612 1 0.121957808732986 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52353617 chr15:52353621 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_38773 0 0 1 0 1 Ribosome 1 0.500235859255146 1 0.999528281489708 hm5C_site_38177 DeepMRMD:1;iRNA_m5C:0.999528281489708 38178 chr10 105174894 105174894 1 + G T TGCT 105174899 + 105174879 105174919 41 TACCACATCGGGGATGAGGTCAAGTGCCGGGTGAGCCTCCT TACCACATCGGGGATTAGGTCAAGTGCCGGGTGAGCCTCCT < 41bp 1 0.464155154474886 1 0.65550035238266 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105174899 chr10:105174894 stopgain 0.896 1 16 hm5C_associated_SNPs_38774 0 0 1 0 1 Nucleus 1 0.500231643921098 0.68899929523468 0.999536712157804 hm5C_site_38178 DeepMRMD:0.68899929523468;iRNA_m5C:0.999536712157804 38179 chr12 56505268 56505268 1 + C T TGCT 56505263 + 56505243 56505283 41 TTCTTCCTGTTTTCCAGGCCCTCCTCCAGAGTTCTGCAAGT TTCTTCCTGTTTTCCAGGCCCTCCTTCAGAGTTCTGCAAGT < 41bp 1 0.235681654601508 1 0.176472753286362 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56505263 chr12:56505268 synonymous SNV . 0 26 hm5C_associated_SNPs_38775 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_38179 DeepMRMD:1;iRNA_m5C:0.999536712157815 38180 chr7 6634134 6634134 1 + G T TGCT 6634139 + 6634119 6634159 41 CTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA CTGCTGTTTGGTGCCTGGATCCATTCAGACGCTGAAGCAGA < 41bp 1 0.0404842473627782 1 0.367957413196564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634139 chr7:6634134 synonymous SNV . 0 16 hm5C_associated_SNPs_38776 0 0 1 0 2 chromatin 1 0.500231526312009 1 0.999536947375983 hm5C_site_38180 DeepMRMD:1;iRNA_m5C:0.999536947375983 38181 chr19 42410875 42410875 1 + C T TGCT 42410885 + 42410865 42410905 41 AGGAATTTTGCCGCCTGAGACCCCTCCTGTCTCAGCTTGGG AGGAATTTTGTCGCCTGAGACCCCTCCTGTCTCAGCTTGGG < 41bp 1 0.152045425446856 1 0.0720550715923309 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42410885 chr19:42410875 nonsynonymous SNV 0.980 0 11 hm5C_associated_SNPs_38777 0 0 1 0 2 Cytosol 1 0.50023164298657 1 0.99953671402686 hm5C_site_38181 DeepMRMD:1;iRNA_m5C:0.99953671402686 38182 chr7 101821755 101821755 1 + G T TGCT 101821775 + 101821755 101821795 41 GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT TCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT < 41bp 1 0.465799309999626 1 0.847205221652985 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101821775 chr7:101821755 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_38778 0 0 1 0 2 Exosome 1 0.500231643950693 0.30558955669403 0.999536712098615 hm5C_site_38182 DeepMRMD:0.30558955669403;iRNA_m5C:0.999536712098615 38183 chr16 67876460 67876460 1 + G T TGCT 67876451 + 67876431 67876471 41 GGCCGGGCCGGGCCGCGCGGCGCAGCCATGCCTGGCTTTAC GGCCGGGCCGGGCCGCGCGGCGCAGCCATTCCTGGCTTTAC < 41bp 1 0.620503364170313 1 0.375467330217361 experiment 0.758993271659373 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control THAP11 ENSG00000168286 CDS Human protein_coding chr16:67876451 chr16:67876460 nonsynonymous SNV 0.999 2 30 hm5C_associated_SNPs_38779 0 0 1 0 0 Ribosome 1 0.500231643921077 1 0.999536712157846 hm5C_site_38183 DeepMRMD:1;iRNA_m5C:0.999536712157846 38184 chr7 4830438 4830438 1 + C T TGCT 4830446 + 4830426 4830466 41 TGCTGCCCTGCCCAGGTGTCCCCCCCAGGTGGTCACCGTGC TGCTGCCCTGCCTAGGTGTCCCCCCCAGGTGGTCACCGTGC < 41bp 1 0.0787013284885063 1 0.0150521695613861 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4830446 chr7:4830438 synonymous SNV . 0 13 hm5C_associated_SNPs_38780 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38184 DeepMRMD:1;iRNA_m5C:0.999536712157815 38185 chr1 155165017 155165017 1 + T C TGCT 155164999 + 155164979 155165019 41 CGGGCGGGAGGGACGGGACGCGGTGCAGTGTTGTTTTTTCC CGGGCGGGAGGGACGGGACGCGGTGCAGTGTTGTTTTTCCC < 41bp 1 0.625663181900297 1 0.411369174718857 experiment 0.748673636199406 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR92B ENSG00000271748 ncRNA_exonic Human other chr1:155164999 chr1:155165017 . . 0 39 hm5C_associated_SNPs_38782 0 0 1 0 0 unknown 1 0.500231644168218 1 0.999536711663565 hm5C_site_38185 DeepMRMD:1;iRNA_m5C:0.999536711663565 38186 chr14 50789405 50789405 1 + C T TGCT 50789391 + 50789371 50789411 41 AAATACAAGATTCAGGCGATCGACGCCACCGACTCTTGTAT AAATACAAGATTCAGGCGATCGACGCCACCGACTTTTGTAT < 41bp 1 0.607871128816165 1 0.228090286254883 experiment 0.784257742367669 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789391 chr14:50789405 nonsynonymous SNV 0.992 5 35 hm5C_associated_SNPs_38783 0 0 1 0 1 Cytosol 1 0.500231643936406 1 0.999536712127188 hm5C_site_38186 DeepMRMD:1;iRNA_m5C:0.999536712127188 38187 chr14 50789405 50789405 1 + C T TGCT 50789396 + 50789376 50789416 41 CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATCATGA CAAGATTCAGGCGATCGACGCCACCGACTTTTGTATCATGA < 41bp 1 0.0716124178838685 1 0.152482151985168 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789396 chr14:50789405 nonsynonymous SNV 0.992 5 30 hm5C_associated_SNPs_38784 0 0 1 0 1 Cytosol 1 0.500231644039661 1 0.999536711920677 hm5C_site_38187 DeepMRMD:1;iRNA_m5C:0.999536711920677 38188 chr5 131811504 131811504 1 + C T TGCT 131811491 + 131811471 131811511 41 AGCATTCCCAGCAGAGGCATCGCCTGTGGACACCGCGTCTG AGCATTCCCAGCAGAGGCATCGCCTGTGGACACTGCGTCTG < 41bp 1 0.444610934284408 1 0.64818274974823 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C5orf56 ENSG00000197536 CDS Human protein_coding chr5:131811491 chr5:131811504 synonymous SNV . 0 34 hm5C_associated_SNPs_38785 0 0 0 0 0 cytosol 1 0.500231424409678 0.70363450050354 0.999537151180643 hm5C_site_38188 DeepMRMD:0.70363450050354;iRNA_m5C:0.999537151180643 38189 chr6 38029485 38029485 1 + A G THCA 38029468 + 38029448 38029488 41 CACCAGTGACAACAACAATACCTCGATAACCACGCCAACTC CACCAGTGACAACAACAATACCTCGATAACCACGCCAGCTC < 41bp 1 0.140738958713886 1 0.313605189323425 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFAND3 ENSG00000156639 CDS Human protein_coding chr6:38029468 chr6:38029485 nonsynonymous SNV 1.000 0 38 hm5C_associated_SNPs_38786 0 0 1 0 0 Cytosol 1 0.500278031449296 1 0.999443937101409 hm5C_site_38189 DeepMRMD:1;iRNA_m5C:0.999443937101409 38190 chr3 57294019 57294019 1 + C A THCA 57294032 + 57294012 57294052 41 AGAATCGCATTTATTAGTCACTTGTGACTGTTTAAAGTAAG AGAATCGAATTTATTAGTCACTTGTGACTGTTTAAAGTAAG < 41bp 1 0.135496759595666 1 0.110286921262741 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APPL1 ENSG00000157500 CDS Human protein_coding chr3:57294032 chr3:57294019 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_38787 0 0 1 0 1 Cytosol 1 0.500231644323877 1 0.999536711352246 hm5C_site_38190 DeepMRMD:1;iRNA_m5C:0.999536711352246 38191 chr3 183369013 183369013 1 + G T THCA 183369020 + 183369000 183369040 41 CATGAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT CATGAAGCAAGACTGTACCACATACTTGGGAATGAAATGAT < 41bp 1 0.0962907885365241 1 0.150333076715469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183369020 chr3:183369013 nonsynonymous SNV 0.963 2 14 hm5C_associated_SNPs_38788 0 0 1 0 1 Ribosome 1 0.500231681909642 1 0.999536636180715 hm5C_site_38191 DeepMRMD:1;iRNA_m5C:0.999536636180715 38192 chr14 105175694 105175694 1 + C A THCA 105175682 + 105175662 105175702 41 CCAAGTTTGATGTGGAGGTTCTCAAACAACTCCTTAAGCTC CCAAGTTTGATGTGGAGGTTCTCAAACAACTCATTAAGCTC < 41bp 1 0.479483733504038 1 0.848838448524475 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105175682 chr14:105175694 nonsynonymous SNV 0.961 0 33 hm5C_associated_SNPs_38791 0 0 1 2 2 Cytosol 1 0.500231643921101 0.30232310295105 0.999536712157798 hm5C_site_38192 DeepMRMD:0.30232310295105;iRNA_m5C:0.999536712157798 38193 chr16 72139460 72139460 1 + C A THCA 72139447 + 72139427 72139467 41 CGTTCGGAAGTGCATCGTTGCCACCAATATTGCCGAGACGT CGTTCGGAAGTGCATCGTTGCCACCAATATTGCAGAGACGT < 41bp 1 0.0528297739257155 1 0.0865331292152405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139447 chr16:72139460 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_38792 0 0 1 0 2 Cytosol 1 0.500231655030935 1 0.99953668993813 hm5C_site_38193 DeepMRMD:1;iRNA_m5C:0.99953668993813 38194 chr16 81078068 81078068 1 + A T THCA 81078069 + 81078049 81078089 41 CTCAAACTGAAGAGAGTGAACTTAGCACCATGACCACCGAG CTCAAACTGAAGAGAGTGATCTTAGCACCATGACCACCGAG < 41bp 1 0.407406719013537 1 0.329730123281479 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81078069 chr16:81078068 nonsynonymous SNV 0.997 1 20 hm5C_associated_SNPs_38793 0 0 1 0 0 Cytosol 1 0.50023164800797 1 0.99953670398406 hm5C_site_38194 DeepMRMD:1;iRNA_m5C:0.99953670398406 38195 chr6 26156708 26156708 1 + G C THCA 26156707 + 26156687 26156727 41 GGCCCGCAAGTCTGCAGGTGCGGCCAAGCGCAAAGCGTCTG GGCCCGCAAGTCTGCAGGTGCCGCCAAGCGCAAAGCGTCTG < 41bp 1 0.245448024040276 1 0.0595986545085907 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26156707 chr6:26156708 synonymous SNV . 0 22 hm5C_associated_SNPs_38794 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38195 DeepMRMD:1;iRNA_m5C:0.999536712157815 38196 chrX 117815662 117815662 1 + T C THCA 117815659 + 117815639 117815679 41 TCTTCTATTGTGATATAGGTCAATGCTGGTCCATTAGCATA TCTTCTATTGTGATATAGGTCAACGCTGGTCCATTAGCATA < 41bp 1 0.313773007654057 1 0.0763935744762421 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117815659 chrX:117815662 synonymous SNV . 0 24 hm5C_associated_SNPs_38795 0 0 1 0 2 Cytosol 1 0.500231643519356 1 0.999536712961288 hm5C_site_38196 DeepMRMD:1;iRNA_m5C:0.999536712961288 38197 chr7 73731926 73731926 1 + C G THCA 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTG < 41bp 1 0.386981799184629 1 0.453015625476837 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731926 nonsynonymous SNV 0.988 3 41 hm5C_associated_SNPs_38796 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38197 DeepMRMD:1;iRNA_m5C:0.999536712157815 38198 chr19 14562693 14562693 1 + G T THCA 14562705 + 14562685 14562725 41 ACCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG ACCATCCCTTGGAACCCTACCCCCTCAATGGGGGGACCTGG < 41bp 1 0.109215962028489 1 0.0728162825107574 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562705 chr19:14562693 synonymous SNV . 0 9 hm5C_associated_SNPs_38797 0 0 1 0 1 Ribosome 1 0.500231638278193 1 0.999536723443613 hm5C_site_38198 DeepMRMD:1;iRNA_m5C:0.999536723443613 38199 chr19 14562693 14562693 1 + G T THCA 14562706 + 14562686 14562726 41 CCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG CCATCCCTTGGAACCCTACCCCCTCAATGGGGGGACCTGGG < 41bp 1 0.0478629482303473 1 0.304154098033905 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562706 chr19:14562693 synonymous SNV . 0 8 hm5C_associated_SNPs_38798 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38199 DeepMRMD:1;iRNA_m5C:0.999536712157815 38200 chr19 14562693 14562693 1 + G T THCA 14562708 + 14562688 14562728 41 ATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGGAC ATCCCTTGGAACCCTACCCCCTCAATGGGGGGACCTGGGAC < 41bp 1 0.679522068701818 1 0.94440495967865 experiment 0.640955862596365 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562708 chr19:14562693 synonymous SNV . 0 6 hm5C_associated_SNPs_38799 0 0 1 0 1 Ribosome 1 0.500231643921144 0.1111900806427 0.999536712157711 hm5C_site_38200 DeepMRMD:0.1111900806427;iRNA_m5C:0.999536712157711 38201 chr16 89925701 89925701 1 + G T THCA 89925700 + 89925680 89925720 41 CACCCACCCCCCAGGAGGGACGGAGCCACCACGGCCCCGAG CACCCACCCCCCAGGAGGGACTGAGCCACCACGGCCCCGAG < 41bp 1 0.421094219008665 1 0.385606408119202 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89925700 chr16:89925701 synonymous SNV . 0 22 hm5C_associated_SNPs_38800 0 0 1 0 0 Cytosol 1 0.50023163388098 1 0.999536732238041 hm5C_site_38201 DeepMRMD:1;iRNA_m5C:0.999536732238041 38202 chr9 137323832 137323832 1 + C T THCA 137323830 + 137323810 137323850 41 GCTGCCTGCGCGCCATCGTCCTCTTTAACCCTGGTATGGCC GCTGCCTGCGCGCCATCGTCCTTTTTAACCCTGGTATGGCC < 41bp 1 0.0359742130846275 1 0.144172161817551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RXRA ENSG00000186350 CDS Human protein_coding chr9:137323830 chr9:137323832 synonymous SNV . 0 23 hm5C_associated_SNPs_38801 0 0 1 0 1 Cytosol 1 0.500231643921047 1 0.999536712157906 hm5C_site_38202 DeepMRMD:1;iRNA_m5C:0.999536712157906 38203 chr9 131296128 131296128 1 + G C THCA 131296139 + 131296119 131296159 41 TCCACCCCAGAGTGGGGGACCTCATTCTTGCTCATCTACAT TCCACCCCACAGTGGGGGACCTCATTCTTGCTCATCTACAT < 41bp 1 0.292357508903708 1 0.0578155219554901 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLE1 ENSG00000119392 CDS Human protein_coding chr9:131296139 chr9:131296128 nonsynonymous SNV 0.998 0 10 hm5C_associated_SNPs_38802 0 0 1 0 1 Cytosol 1 0.500231643921086 1 0.999536712157829 hm5C_site_38203 DeepMRMD:1;iRNA_m5C:0.999536712157829 38204 chr10 71243586 71243586 1 + T C THCA 71243594 + 71243574 71243614 41 TGGTCTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAAC TGGTCTCCTTCACTGGTGTGCTGGCGTCCCTCCGTGACAAC < 41bp 1 0.514146778096065 1 0.336506336927414 experiment 0.97170644380787 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243594 chr10:71243586 nonsynonymous SNV 0.997 1 13 hm5C_associated_SNPs_38803 0 0 1 0 1 Cytosol 1 0.500231653304386 1 0.999536693391228 hm5C_site_38204 DeepMRMD:1;iRNA_m5C:0.999536693391228 38205 chr10 71243586 71243586 1 + T C THCA 71243598 + 71243578 71243618 41 CTCCTTCATTGGTGTGCTGGCGTCCCTCCGTGACAACCTGT CTCCTTCACTGGTGTGCTGGCGTCCCTCCGTGACAACCTGT < 41bp 1 0.108661842952399 1 0.172040104866028 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243598 chr10:71243586 nonsynonymous SNV 0.997 1 9 hm5C_associated_SNPs_38804 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38205 DeepMRMD:1;iRNA_m5C:0.999536712157815 38206 chr10 71243586 71243586 1 + T C THCA 71243601 + 71243581 71243621 41 CTTCATTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACC CTTCACTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACC < 41bp 1 0.0560846118287794 1 0.132752597332001 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243601 chr10:71243586 nonsynonymous SNV 0.997 1 6 hm5C_associated_SNPs_38805 0 0 1 0 1 Cytosol 1 0.500231632200199 1 0.999536735599603 hm5C_site_38206 DeepMRMD:1;iRNA_m5C:0.999536735599603 38207 chr10 71243586 71243586 1 + T C THCA 71243606 + 71243586 71243626 41 TTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACCTTCTC CTGGTGTGCTGGCGTCCCTCCGTGACAACCTGTACCTTCTC < 41bp 1 0.637728028265707 1 0.64732950925827 experiment 0.724543943468586 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71243606 chr10:71243586 nonsynonymous SNV 0.997 1 1 hm5C_associated_SNPs_38806 0 0 1 0 1 Cytosol 1 0.500231644040308 0.70534098148346 0.999536711919384 hm5C_site_38207 DeepMRMD:0.70534098148346;iRNA_m5C:0.999536711919384 38208 chr12 132334395 132334395 1 + C T THCA 132334394 + 132334374 132334414 41 ATAACGTAGAGGAAGGATACCCGCGCCCCGTCTCCGACTTC ATAACGTAGAGGAAGGATACCTGCGCCCCGTCTCCGACTTC < 41bp 1 0.484282217082249 1 0.0625821352005005 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334394 chr12:132334395 nonsynonymous SNV 0.975 4 22 hm5C_associated_SNPs_38807 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38208 DeepMRMD:1;iRNA_m5C:0.999536712157815 38209 chr21 42769555 42769555 1 + G T THCA 42769560 + 42769540 42769580 41 AGTTCTCCTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG AGTTCTCCTGGAGGATGGGTCAGCCACGGTTCCCCGACTGG < 41bp 1 0.280126953406362 1 0.406010180711746 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MX2 ENSG00000183486 CDS Human protein_coding chr21:42769560 chr21:42769555 nonsynonymous SNV 0.138 0 16 hm5C_associated_SNPs_38808 0 0 0 0 1 exosome 1 0.500231643921183 1 0.999536712157634 hm5C_site_38209 DeepMRMD:1;iRNA_m5C:0.999536712157634 38210 chr21 47754549 47754549 1 + G A THCA 47754537 + 47754517 47754557 41 GTTCACAGTCAGTGACCACCCACCAGAACAGCGTGGGATGT GTTCACAGTCAGTGACCACCCACCAGAACAGCATGGGATGT < 41bp 1 0.639630190210017 1 0.44295808672905 experiment 0.720739619579967 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47754537 chr21:47754549 nonsynonymous SNV 0.028 1 33 hm5C_associated_SNPs_38809 1 0 1 0 0 Exosome 1 0.500231770660275 1 0.99953645867945 hm5C_site_38210 DeepMRMD:1;iRNA_m5C:0.99953645867945 not specified not specified 38211 chr3 183903979 183903979 1 + G T THCA 183903969 + 183903949 183903989 41 AGGCCGGGGTCTCACAGCGACTGCGCGGACGGGTTCCTGAG AGGCCGGGGTCTCACAGCGACTGCGCGGACTGGTTCCTGAG < 41bp 1 0.654188129444353 1 0.413985848426819 experiment 0.691623741111294 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCF3 ENSG00000161204 UTR5 Human protein_coding chr3:183903969 chr3:183903979 . . 0 31 hm5C_associated_SNPs_38810 0 0 0 0 1 Cytosol 1 0.500231618117241 1 0.999536763765518 hm5C_site_38211 DeepMRMD:1;iRNA_m5C:0.999536763765518 38212 chr16 2811731 2811731 1 + G T THCA 2811746 + 2811726 2811766 41 AACTCGGGACCGTTCACCACCTAAGTCTCCCGAGAAACTTC AACTCTGGACCGTTCACCACCTAAGTCTCCCGAGAAACTTC < 41bp 1 0.374291717559517 1 0.167218238115311 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2811746 chr16:2811731 nonsynonymous SNV 0.660 0 6 hm5C_associated_SNPs_38811 0 0 1 0 0 Nucleus 1 0.500231643921208 1 0.999536712157585 hm5C_site_38212 DeepMRMD:1;iRNA_m5C:0.999536712157585 38213 chr21 40191649 40191649 1 + G T THCA 40191635 + 40191615 40191655 41 TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACC TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGTCAAACC < 41bp 1 0.22963204914206 1 0.196422249078751 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191635 chr21:40191649 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_38812 0 0 0 0 1 Ribosome 1 0.500231628999591 1 0.999536742000818 hm5C_site_38213 DeepMRMD:1;iRNA_m5C:0.999536742000818 38214 chr21 40191649 40191649 1 + G T THCA 40191636 + 40191616 40191656 41 ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCA ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGTCAAACCA < 41bp 1 0.466889538746938 1 0.49292317032814 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191636 chr21:40191649 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_38813 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38214 DeepMRMD:1;iRNA_m5C:0.999536712157815 38215 chr21 40191649 40191649 1 + G T THCA 40191637 + 40191617 40191657 41 CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCAG CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGTCAAACCAG < 41bp 1 0.68019059514581 1 0.817343890666962 experiment 0.639618809708379 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191637 chr21:40191649 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_38814 0 0 0 0 1 Ribosome 1 0.500228813277469 0.365312218666076 0.999542373445061 hm5C_site_38215 DeepMRMD:0.365312218666076;iRNA_m5C:0.999542373445061 38216 chrX 153691996 153691996 1 + G T THCA 153692001 + 153691981 153692021 41 GCCTGCCTGGGCTCCGGGGACCCGCACTGTGGTTGGTGTGT GCCTGCCTGGGCTCCTGGGACCCGCACTGTGGTTGGTGTGT < 41bp 1 0.100164118182199 1 0.0980897545814514 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153692001 chrX:153691996 nonsynonymous SNV 0.923 4 16 hm5C_associated_SNPs_38815 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643516046 1 0.999536712967907 hm5C_site_38216 DeepMRMD:1;iRNA_m5C:0.999536712967907 38217 chr6 30547740 30547740 1 + G T THCA 30547729 + 30547709 30547749 41 CCGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG CCGTATCTGAGGAACAGCAGCCTGCACTCAATGGCAAAAAG < 41bp 1 0.0706005369677115 1 0.042596310377121 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547729 chr6:30547740 nonsynonymous SNV 0.907 1 32 hm5C_associated_SNPs_38816 0 0 1 0 2 Endoplasmic reticulum 1 0.5002316437744 1 0.999536712451199 hm5C_site_38217 DeepMRMD:1;iRNA_m5C:0.999536712451199 38218 chr6 30547740 30547740 1 + G T THCA 30547735 + 30547715 30547755 41 CTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAGGGAAAG CTGAGGAACAGCAGCCTGCACTCAATGGCAAAAAGGGAAAG < 41bp 1 0.547540922433471 1 0.528071343898773 experiment 0.904918155133058 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547735 chr6:30547740 nonsynonymous SNV 0.907 1 26 hm5C_associated_SNPs_38817 0 0 1 0 2 Endoplasmic reticulum 1 0.500232065946567 0.943857312202454 0.999535868106866 hm5C_site_38218 DeepMRMD:0.943857312202454;iRNA_m5C:0.999535868106866 38219 chr5 134130604 134130604 1 + C A THCA 134130605 + 134130585 134130625 41 ATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGC ATGTTTTCAGCTACTTTCCACAGAGCTATGGAGGCTTTGGC < 41bp 1 0.401686689121677 1 0.0960309207439423 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134130605 chr5:134130604 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_38818 0 0 1 2 1 Cytosol 1 0.500233293279827 1 0.999533413440346 hm5C_site_38219 DeepMRMD:1;iRNA_m5C:0.999533413440346 38220 chr14 93043721 93043721 1 + G T THCA 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTCGCCTGGACAGCAGCTCGAAGCAGCTGGT < 41bp 1 0.544270161635369 1 0.384941399097443 experiment 0.911459676729263 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043721 nonsynonymous SNV 0.015 3 17 hm5C_associated_SNPs_38819 0 0 0 0 1 cytosol 1 0.500231643831998 1 0.999536712336003 hm5C_site_38220 DeepMRMD:1;iRNA_m5C:0.999536712336003 38221 chr20 54970759 54970759 1 + C A THCA 54970762 + 54970742 54970782 41 CACCCTCGGAGCAGCTCCTGCATCTCATCAAACTCGGTAGA CACCCTCGGAGCAGCTCATGCATCTCATCAAACTCGGTAGA < 41bp 1 0.244174493840603 1 0.148891389369965 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54970762 chr20:54970759 nonsynonymous SNV 0.999 1 18 hm5C_associated_SNPs_38820 0 0 1 0 1 Cytosol 1 0.500231563184314 1 0.999536873631371 hm5C_site_38221 DeepMRMD:1;iRNA_m5C:0.999536873631371 38222 chr16 4382305 4382305 1 + C A THCA 4382296 + 4382276 4382316 41 CTCACCATGCACTCCCTGGACGAGCCGCTCGACCTGAAGCT CTCACCATGCACTCCCTGGACGAGCCGCTAGACCTGAAGCT < 41bp 1 0.327187588929948 1 0.512152791023254 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4382296 chr16:4382305 synonymous SNV . 0 30 hm5C_associated_SNPs_38821 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644078329 0.975694417953492 0.999536711843342 hm5C_site_38222 DeepMRMD:0.975694417953492;iRNA_m5C:0.999536711843342 38223 chr16 4382305 4382305 1 + C A THCA 4382300 + 4382280 4382320 41 CCATGCACTCCCTGGACGAGCCGCTCGACCTGAAGCTGAGT CCATGCACTCCCTGGACGAGCCGCTAGACCTGAAGCTGAGT < 41bp 1 0.0792271746529381 1 0.0380935072898865 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4382300 chr16:4382305 synonymous SNV . 0 26 hm5C_associated_SNPs_38822 0 0 1 0 0 Endoplasmic reticulum 1 0.500231648787176 1 0.999536702425647 hm5C_site_38223 DeepMRMD:1;iRNA_m5C:0.999536702425647 38224 chr4 79301030 79301030 1 + A G THCA 79301019 + 79300999 79301039 41 CTCCTATTTCATGTTGTGAGCACTCCCACCAATGGTCAGCT CTCCTATTTCATGTTGTGAGCACTCCCACCAGTGGTCAGCT < 41bp 1 0.024219688256073 1 0.0561962723731995 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79301019 chr4:79301030 nonsynonymous SNV 0.997 4 32 hm5C_associated_SNPs_38823 0 0 1 0 0 Nucleus 1 0.500231643957804 1 0.999536712084393 hm5C_site_38224 DeepMRMD:1;iRNA_m5C:0.999536712084393 38225 chr17 900397 900397 1 + C A THCA 900378 + 900358 900398 41 GAGGGTTGCTTGGGCAGCGACTGTCATGGCGGCGGCCGCCC GAGGGTTGCTTGGGCAGCGACTGTCATGGCGGCGGCCGCAC < 41bp 1 0.559543857757445 1 0.27339106798172 experiment 0.88091228448511 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TIMM22 ENSG00000177370 CDS Human protein_coding chr17:900378 chr17:900397 synonymous SNV . 0 40 hm5C_associated_SNPs_38824 0 0 1 0 0 Cytosol 1 0.500231643926712 1 0.999536712146577 hm5C_site_38225 DeepMRMD:1;iRNA_m5C:0.999536712146577 38226 chr6 151646999 151646999 1 + C T THCA 151647007 + 151646987 151647027 41 ACTTAAAATATGCTGGGGACCATCACCATCACAGGTAAGGC ACTTAAAATATGTTGGGGACCATCACCATCACAGGTAAGGC < 41bp 1 0.1546950143397 1 0.105598211288452 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151647007 chr6:151646999 synonymous SNV . 0 13 hm5C_associated_SNPs_38825 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38226 DeepMRMD:1;iRNA_m5C:0.999536712157815 38227 chr1 39926406 39926406 1 + G A THCA 39926397 + 39926377 39926417 41 CTCGAGTGATGGATTTCTTCCGGCGCATTGATAAGGACCAG CTCGAGTGATGGATTTCTTCCGGCGCATTAATAAGGACCAG < 41bp 1 0.223287433707381 1 0.828563988208771 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39926397 chr1:39926406 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_38826 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.342872023582458 0.999536712157815 hm5C_site_38227 DeepMRMD:0.342872023582458;iRNA_m5C:0.999536712157815 38228 chr22 40802633 40802633 1 + C G THCA 40802642 + 40802622 40802662 41 CAGGGCCAGCTCCTGGGGGCCGGCACCCTCACCAACCTCTC CAGGGCCAGCTGCTGGGGGCCGGCACCCTCACCAACCTCTC < 41bp 1 0.679070453192653 1 0.8268803358078 experiment 0.641859093614694 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40802642 chr22:40802633 synonymous SNV . 0 12 hm5C_associated_SNPs_38827 0 0 1 0 1 Cytosol 1 0.5002316439212 0.3462393283844 0.999536712157599 hm5C_site_38228 DeepMRMD:0.3462393283844;iRNA_m5C:0.999536712157599 38229 chr9 133760720 133760720 1 + A C THCA 133760722 + 133760702 133760742 41 CGAGTGTCTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGAT CGAGTGTCTCTTCGGAAACCCCGCCAGCCTCCAGAGCGGAT < 41bp 1 0.0575394229263132 1 0.1010522544384 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760722 chr9:133760720 nonsynonymous SNV 0.998 1 19 hm5C_associated_SNPs_38828 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643925133 1 0.999536712149735 hm5C_site_38229 DeepMRMD:1;iRNA_m5C:0.999536712149735 38230 chr9 133760720 133760720 1 + A C THCA 133760729 + 133760709 133760749 41 CTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGATCGCCAGC CTCTTCGGAAACCCCGCCAGCCTCCAGAGCGGATCGCCAGC < 41bp 1 0.0146794884004399 1 0.0767748951911926 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760729 chr9:133760720 nonsynonymous SNV 0.998 1 12 hm5C_associated_SNPs_38829 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921054 1 0.999536712157893 hm5C_site_38230 DeepMRMD:1;iRNA_m5C:0.999536712157893 38231 chrX 17705940 17705940 1 + T C THCA 17705955 + 17705935 17705975 41 CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC CTTCCCCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC < 41bp 1 0.345399757386405 1 0.0400842130184174 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705955 chrX:17705940 nonsynonymous SNV 0.994 2 6 hm5C_associated_SNPs_38830 0 0 0 0 2 nucleus 1 0.500231643358311 1 0.999536713283377 hm5C_site_38231 DeepMRMD:1;iRNA_m5C:0.999536713283377 38232 chr1 150923107 150923107 1 + G T THCA 150923116 + 150923096 150923136 41 CTGTCTGTCTCGAGTCAGACCTATGAGGAATGAGCAGTACC CTGTCTGTCTCTAGTCAGACCTATGAGGAATGAGCAGTACC < 41bp 1 0.159349637602565 1 0.258409321308136 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150923116 chr1:150923107 nonsynonymous SNV 0.860 4 12 hm5C_associated_SNPs_38832 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_38232 DeepMRMD:1;iRNA_m5C:0.999536712157815 38233 chr7 99159527 99159527 1 + G T THCA 99159535 + 99159515 99159555 41 ACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCC ACCTGTTCCTCATGTGCCTGCTCTTCCCCGTGAGGGAAGCC < 41bp 1 0.165164210719012 1 0.0743283629417419 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99159535 chr7:99159527 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_38833 0 0 1 0 2 Cytosol 1 0.500231644129041 1 0.999536711741919 hm5C_site_38233 DeepMRMD:1;iRNA_m5C:0.999536711741919 38234 chr7 99956642 99956642 1 + C A THCA 99956624 + 99956604 99956644 41 ACCAGTCTGTGTATTTCTGCCGAGTCGAGCTGGACACCCGG ACCAGTCTGTGTATTTCTGCCGAGTCGAGCTGGACACCAGG < 41bp 1 0.508307179705148 1 0.786377429962158 experiment 0.983385640589703 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956624 chr7:99956642 nonsynonymous SNV 0.000 1 39 hm5C_associated_SNPs_38834 0 0 1 0 0 Cytosol 1 0.500229824349341 0.427245140075684 0.999540351301319 hm5C_site_38234 DeepMRMD:0.427245140075684;iRNA_m5C:0.999540351301319 38235 chr12 107237687 107237687 1 + C A THCA 107237701 + 107237681 107237721 41 TGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA TGTTCCAGAGCCCATCGAAACATCCGAAAATTTCTCAAAGA < 41bp 1 0.190740844159341 1 0.272669941186905 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107237701 chr12:107237687 synonymous SNV . 0 7 hm5C_associated_SNPs_38837 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38235 DeepMRMD:1;iRNA_m5C:0.999536712157815 38236 chr19 41778032 41778032 1 + C A THCA 41778031 + 41778011 41778051 41 GAGCACCCACCAGCTTCCTCCCGCCTGAAGCTTCTCAACTC GAGCACCCACCAGCTTCCTCCAGCCTGAAGCTTCTCAACTC < 41bp 1 0.356177432141097 1 0.223517447710037 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41778031 chr19:41778032 nonsynonymous SNV 0.958 0 22 hm5C_associated_SNPs_38838 0 0 1 0 0 Cytosol 1 0.500231644073076 1 0.999536711853848 hm5C_site_38236 DeepMRMD:1;iRNA_m5C:0.999536711853848 38237 chr8 56866442 56866442 1 + A G THCA 56866453 + 56866433 56866473 41 TTAGTCCCAAGCCACAGAAGCCATGGGATAAAGATGCCTGG TTAGTCCCAGGCCACAGAAGCCATGGGATAAAGATGCCTGG < 41bp 1 0.146849212167529 1 0.4024738073349 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56866453 chr8:56866442 nonsynonymous SNV 0.992 1 10 hm5C_associated_SNPs_38839 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38237 DeepMRMD:1;iRNA_m5C:0.999536712157815 38238 chr19 46519606 46519606 1 + C A THCA 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCGCTTCGACCCCACGGACTTTGTGAA < 41bp 1 0.256933446058912 1 0.322009384632111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519606 nonsynonymous SNV 0.999 3 32 hm5C_associated_SNPs_38841 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38238 DeepMRMD:1;iRNA_m5C:0.999536712157815 38239 chr6 30877258 30877258 1 + C A THCA 30877252 + 30877232 30877272 41 AGAACTGGGTGATGCGGATGCTCTTTCTGGAGCAGCCTTTG AGAACTGGGTGATGCGGATGCTCTTTATGGAGCAGCCTTTG < 41bp 1 0.384772862601576 1 0.0336402654647827 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30877252 chr6:30877258 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_38842 0 0 0 0 2 chromatin 1 0.50023125580306 1 0.999537488393879 hm5C_site_38239 DeepMRMD:1;iRNA_m5C:0.999537488393879 38240 chr6 31516041 31516041 1 + C T THCA 31516048 + 31516028 31516068 41 CCCAGGCCCTCCTCCAGCGACACCCAGGCCTCGATGTAGAT CCCAGGCCCTCCTTCAGCGACACCCAGGCCTCGATGTAGAT < 41bp 1 0.304031930379181 1 0.0220127105712891 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFKBIL1 ENSG00000204498;ENSG00000213760 CDS Human other chr6:31516048 chr6:31516041 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_38843 0 0 1 0 0 cytosol 1 0.500231607727808 1 0.999536784544385 hm5C_site_38240 DeepMRMD:1;iRNA_m5C:0.999536784544385 38241 chr6 146875728 146875728 1 + C T THCA 146875716 + 146875696 146875736 41 AGATCAAGAGACCTTGAGAGCAGAGAACAAATCCCAGTGTT AGATCAAGAGACCTTGAGAGCAGAGAACAAATTCCAGTGTT < 41bp 1 0.576235673836754 1 0.772846400737762 experiment 0.847528652326492 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAB32 ENSG00000118508 CDS Human protein_coding chr6:146875716 chr6:146875728 nonsynonymous SNV 0.968 2 33 hm5C_associated_SNPs_38844 0 0 1 0 0 Ribosome 1 0.500678606167139 0.454307198524476 0.998642787665721 hm5C_site_38241 DeepMRMD:0.454307198524476;iRNA_m5C:0.998642787665721 38242 chr10 103908243 103908243 1 + C T THCA 103908226 + 103908206 103908246 41 CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCCCCA CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCTCCA < 41bp 1 0.438487629755225 1 0.736812829971313 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908226 chr10:103908243 synonymous SNV . 0 38 hm5C_associated_SNPs_38845 0 0 1 0 1 Cytosol 1 0.500231643147799 0.526374340057374 0.999536713704401 hm5C_site_38242 DeepMRMD:0.526374340057374;iRNA_m5C:0.999536713704401 38243 chr18 9182470 9182470 1 + A G THCA 9182456 + 9182436 9182476 41 CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAAATTCTG CAAATCTGGGTTCACAAAACCAATTCAGAGTGAAGATTCTG < 41bp 1 0.0997253881378105 1 0.0444479286670685 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD12 ENSG00000101745 CDS Human protein_coding chr18:9182456 chr18:9182470 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_38847 0 0 1 0 2 Cytosol 1 0.500231643755188 1 0.999536712489623 hm5C_site_38243 DeepMRMD:1;iRNA_m5C:0.999536712489623 38244 chr6 33243782 33243782 1 + A G THCA 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCCAGTGCAAGATCCCA < 41bp 1 0.203253240235643 1 0.0317802131175995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243782 nonsynonymous SNV 0.994 4 31 hm5C_associated_SNPs_38848 0 0 1 2 2 Cytosol 1 0.500231648636061 1 0.999536702727879 hm5C_site_38244 DeepMRMD:1;iRNA_m5C:0.999536702727879 38245 chr7 129102860 129102860 1 + G A THCA 129102845 + 129102825 129102865 41 GAGACGCCATGTGAAATCCTCTACCAGGGAATGCTGTACAG GAGACGCCATGTGAAATCCTCTACCAGGGAATGCTATACAG < 41bp 1 0.332695417122013 1 0.161685049533844 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129102845 chr7:129102860 synonymous SNV . 0 36 hm5C_associated_SNPs_38853 0 0 1 0 2 Nucleus 1 0.500231643922375 1 0.999536712155251 hm5C_site_38245 DeepMRMD:1;iRNA_m5C:0.999536712155251 38246 chr8 104066176 104066176 1 + G A THCA 104066182 + 104066162 104066202 41 TTGTTCTTGATTCAGAGTATCTCGTCACATTACTGGTAGTA TTGTTCTTGATTCAAAGTATCTCGTCACATTACTGGTAGTA < 41bp 1 0.410229315846457 1 0.0582627952098846 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104066182 chr8:104066176 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_38854 0 0 1 0 2 Ribosome 1 0.500231650112201 1 0.999536699775598 hm5C_site_38246 DeepMRMD:1;iRNA_m5C:0.999536699775598 38247 chr7 128494189 128494189 1 + G A THCA 128494192 + 128494172 128494212 41 CCACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGG CCACCCAGGTCGGCGGGAACCCCTTCCCTGCTGTGTTTGGG < 41bp 1 0.0635304268567803 1 0.0998290181159973 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128494192 chr7:128494189 nonsynonymous SNV 0.994 3 18 hm5C_associated_SNPs_38855 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_38247 DeepMRMD:1;iRNA_m5C:0.999536712157816 38248 chr7 128494189 128494189 1 + G A THCA 128494193 + 128494173 128494213 41 CACCCAGGTCGGCGGGGACCCCTTCCCTGCTGTGTTTGGGG CACCCAGGTCGGCGGGAACCCCTTCCCTGCTGTGTTTGGGG < 41bp 1 0.0173161923851336 1 0.269169926643372 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128494193 chr7:128494189 nonsynonymous SNV 0.994 3 17 hm5C_associated_SNPs_38856 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38248 DeepMRMD:1;iRNA_m5C:0.999536712157815 38249 chr17 28766044 28766044 1 + G A THCA 28766053 + 28766033 28766073 41 TGTATCCTAATGAATATTTTCCTCATGGAATAACAAATGGA TGTATCCTAATAAATATTTTCCTCATGGAATAACAAATGGA < 41bp 1 0.0852734810491036 1 0.256487131118774 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28766053 chr17:28766044 nonsynonymous SNV 0.999 3 12 hm5C_associated_SNPs_38857 0 0 1 0 2 Nucleus 1 0.500298233133011 1 0.999403533733978 hm5C_site_38249 DeepMRMD:1;iRNA_m5C:0.999403533733978 38250 chr17 28766046 28766046 1 + A T THCA 28766053 + 28766033 28766073 41 TGTATCCTAATGAATATTTTCCTCATGGAATAACAAATGGA TGTATCCTAATGATTATTTTCCTCATGGAATAACAAATGGA < 41bp 1 0.11649182324524 1 0.427544921636581 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28766053 chr17:28766046 nonsynonymous SNV 0.999 3 14 hm5C_associated_SNPs_38858 0 0 1 0 2 Nucleus 1 0.500231565808753 1 0.999536868382495 hm5C_site_38250 DeepMRMD:1;iRNA_m5C:0.999536868382495 38251 chr7 128445518 128445518 1 + G T THCA 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATGGATTTCTTAGAGCCTGATCCTGAAATTCAGTTGT < 41bp 1 0.20330708133173 1 0.143092960119247 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445518 nonsynonymous SNV 0.946 0 34 hm5C_associated_SNPs_38859 0 0 1 0 1 chromatin 1 0.500231643921044 1 0.999536712157912 hm5C_site_38251 DeepMRMD:1;iRNA_m5C:0.999536712157912 38252 chr7 128445518 128445518 1 + G T THCA 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TGGATTTCTTAGAGCCTGATCCTGAAATTCAGTTGTTACGG < 41bp 1 0.307363425584042 1 0.342115879058838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445518 nonsynonymous SNV 0.946 0 29 hm5C_associated_SNPs_38860 0 0 1 0 1 chromatin 1 0.500231643921124 1 0.999536712157752 hm5C_site_38252 DeepMRMD:1;iRNA_m5C:0.999536712157752 38253 chr17 7592188 7592188 1 + T C THCA 7592180 + 7592160 7592200 41 AGGAGCTACGGGAGGGGGACCCAGTTTCTCTCTCCACTCCC AGGAGCTACGGGAGGGGGACCCAGTTTCCCTCTCCACTCCC < 41bp 1 0.399642390823493 1 0.276238441467285 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7592180 chr17:7592188 synonymous SNV . 0 29 hm5C_associated_SNPs_38861 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38253 DeepMRMD:1;iRNA_m5C:0.999536712157815 38254 chr2 46803742 46803742 1 + G C THCA 46803731 + 46803711 46803751 41 AGATGACCCCAAAACTTTAGCAAGACTGAATGATATGAAAG AGATGACCCCAAAACTTTAGCAAGACTGAATCATATGAAAG < 41bp 1 0.649301594447179 1 0.514913201332092 experiment 0.701396811105641 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RHOQ ENSG00000119729 CDS Human protein_coding chr2:46803731 chr2:46803742 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_38862 0 0 0 0 2 nucleoplasm 1 0.500231643921092 0.970173597335816 0.999536712157815 hm5C_site_38254 DeepMRMD:0.970173597335816;iRNA_m5C:0.999536712157815 38255 chr12 113388602 113388602 1 + C T THCA 113388604 + 113388584 113388624 41 GGACCAGGGGCCCCGCCGCGCAGAGATCCTTGATGAGATGC GGACCAGGGGCCCCGCCGTGCAGAGATCCTTGATGAGATGC < 41bp 1 0.538861983808986 1 0.614689350128174 experiment 0.922276032382027 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113388604 chr12:113388602 synonymous SNV . 0 19 hm5C_associated_SNPs_38863 0 0 0 0 0 Nucleus 1 0.500231644587854 0.770621299743652 0.999536710824292 hm5C_site_38255 DeepMRMD:0.770621299743652;iRNA_m5C:0.999536710824292 38256 chr19 13056748 13056748 1 + C T THCA 13056739 + 13056719 13056759 41 GTTGTGTGAGGATCCCGGGGCCGCCGCGTCGCTCGGGCCCC GTTGTGTGAGGATCCCGGGGCCGCCGCGTTGCTCGGGCCCC < 41bp 1 0.407136241341587 1 0.120392233133316 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RAD23A ENSG00000179262 UTR5 Human protein_coding chr19:13056739 chr19:13056748 . . 0 30 hm5C_associated_SNPs_38864 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38256 DeepMRMD:1;iRNA_m5C:0.999536712157815 38257 chr1 228451875 228451875 1 + G T THCA 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGCTGGGACCAGTGCCACGCTGAGCTGCGA < 41bp 1 0.103231122325065 1 0.687167227268219 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451875 synonymous SNV . 0 15 hm5C_associated_SNPs_38865 0 0 0 0 1 Ribosome 1 0.500228767099297 0.625665545463562 0.999542465801405 hm5C_site_38257 DeepMRMD:0.625665545463562;iRNA_m5C:0.999542465801405 38258 chr6 33411153 33411153 1 + C A THCA 33411133 + 33411113 33411153 41 GAACCCTCTCTTCCACATGGCTGCTGATGGGCCAGGTCCCC GAACCCTCTCTTCCACATGGCTGCTGATGGGCCAGGTCCCA < 41bp 1 0.193874093509344 1 0.0157720148563385 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33411133 chr6:33411153 nonsynonymous SNV 0.136 1 41 hm5C_associated_SNPs_38866 0 0 0 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_38258 DeepMRMD:1;iRNA_m5C:0.999536712157815 38259 chr7 892493 892493 1 + C A THCA 892492 + 892472 892512 41 CAATTTCTTTTCGTTCTTGCCCGTGTTGAACTGGGCAAGCA CAATTTCTTTTCGTTCTTGCCAGTGTTGAACTGGGCAAGCA < 41bp 1 0.491321418696133 1 0.239092826843262 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SUN1 ENSG00000164828 CDS Human protein_coding chr7:892492 chr7:892493 synonymous SNV . 0 22 hm5C_associated_SNPs_38867 0 0 1 0 3 Endoplasmic reticulum 1 0.500231636595775 1 0.99953672680845 hm5C_site_38259 DeepMRMD:1;iRNA_m5C:0.99953672680845 38260 chr9 5656675 5656675 1 + C A THCA 5656689 + 5656669 5656709 41 TAGTACCATGATAGCTGTATCAGTAAGTAGATTTTACCGCT TAGTACAATGATAGCTGTATCAGTAAGTAGATTTTACCGCT < 41bp 1 0.456514960149377 1 0.741575956344604 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RIC1 ENSG00000107036 CDS Human protein_coding chr9:5656689 chr9:5656675 synonymous SNV . 0 7 hm5C_associated_SNPs_38868 0 0 1 0 2 Nucleus 1 0.500231644012312 0.516848087310792 0.999536711975376 hm5C_site_38260 DeepMRMD:0.516848087310792;iRNA_m5C:0.999536711975376 38261 chrX 70347951 70347951 1 + G T THCA 70347944 + 70347924 70347964 41 TGCAATGCCCTTATGCACGTCTGTGTGGGGCACCATGATCC TGCAATGCCCTTATGCACGTCTGTGTGTGGCACCATGATCC < 41bp 1 0.243652849152328 1 0.32761013507843 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70347944 chrX:70347951 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_38869 0 0 1 0 1 Cytosol 1 0.500230698306574 1 0.999538603386853 hm5C_site_38261 DeepMRMD:1;iRNA_m5C:0.999538603386853 38262 chr6 18213961 18213961 1 + C A THCA 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTTTGGTCACGTTCCTCCAAGTGCCAGCAAGCGAGGG < 41bp 1 0.40997443283848 1 0.888758420944214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213961 synonymous SNV . 0 23 hm5C_associated_SNPs_38870 0 0 1 0 2 Cytosol 1 0.500231643921092 0.222483158111572 0.999536712157815 hm5C_site_38262 DeepMRMD:0.222483158111572;iRNA_m5C:0.999536712157815 38263 chr12 6493845 6493845 1 + C A THCA 6493838 + 6493818 6493858 41 AGCACCGCATCTGCTGCTCCCGCTGCCCGCCAGGTGAGAGG AGCACCGCATCTGCTGCTCCCGCTGCCAGCCAGGTGAGAGG < 41bp 1 0.32909159823095 1 0.296728640794754 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LTBR ENSG00000111321 CDS Human protein_coding chr12:6493838 chr12:6493845 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_38871 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_38263 DeepMRMD:1;iRNA_m5C:0.999536712157816 38264 chr21 47836433 47836433 1 + C A THCA 47836431 + 47836411 47836451 41 GACCAGCGTACTTGGTGGCTCCCGCCACCAGAGCCACACTG GACCAGCGTACTTGGTGGCTCCAGCCACCAGAGCCACACTG < 41bp 1 0.0990230526320132 1 0.696456968784332 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47836431 chr21:47836433 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_38872 0 0 1 0 0 Exosome 1 0.500231704983776 0.607086062431336 0.999536590032447 hm5C_site_38264 DeepMRMD:0.607086062431336;iRNA_m5C:0.999536590032447 38265 chr2 36668427 36668427 1 + C A THCA 36668446 + 36668426 36668466 41 CCGCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT CAGCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT < 41bp 1 0.617393979039806 1 0.770872712135315 experiment 0.765212041920387 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668446 chr2:36668427 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_38873 0 0 1 0 1 Nucleus 1 0.500231668878344 0.45825457572937 0.999536662243312 hm5C_site_38265 DeepMRMD:0.45825457572937;iRNA_m5C:0.999536662243312 38266 chr9 35733109 35733109 1 + C A THCA 35733112 + 35733092 35733132 41 CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT CATGACCACACCTACTCACTCCCACGGGAAACTGTCTCTAT < 41bp 1 0.184368610900871 1 0.155895680189133 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733112 chr9:35733109 synonymous SNV . 0 18 hm5C_associated_SNPs_38874 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921832 1 0.999536712156336 hm5C_site_38266 DeepMRMD:1;iRNA_m5C:0.999536712156336 38267 chr9 35733109 35733109 1 + C A THCA 35733113 + 35733093 35733133 41 ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG ATGACCACACCTACTCACTCCCACGGGAAACTGTCTCTATG < 41bp 1 0.174215100115541 1 0.154773235321045 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733113 chr9:35733109 synonymous SNV . 0 17 hm5C_associated_SNPs_38875 0 0 1 0 1 Endoplasmic reticulum 1 0.500230918953866 1 0.999538162092267 hm5C_site_38267 DeepMRMD:1;iRNA_m5C:0.999538162092267 38268 chr2 62934336 62934336 1 + G T THCA 62934334 + 62934314 62934354 41 TTGACTGATCATCATGGCTTCAGTTTGGAAGAGACTGCAGC TTGACTGATCATCATGGCTTCATTTTGGAAGAGACTGCAGC < 41bp 1 0.0315076606881325 1 0.0357182323932648 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EHBP1 ENSG00000115504 CDS Human protein_coding chr2:62934334 chr2:62934336 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_38876 0 0 1 0 1 Nucleus 1 0.500001041018781 1 0.999997917962439 hm5C_site_38268 DeepMRMD:1;iRNA_m5C:0.999997917962439 38269 chr5 54456042 54456042 1 + C T THCA 54456062 + 54456042 54456082 41 CCGCTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT TCGCTAAAATGTTCCGGGCCCAGAGCAAAGGTATTTGCAGT < 41bp 1 0.517232264013849 1 0.45128333568573 experiment 0.965535471972301 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPX8 ENSG00000164294 CDS Human protein_coding chr5:54456062 chr5:54456042 nonsynonymous SNV 0.989 0 1 hm5C_associated_SNPs_38877 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921005 1 0.99953671215799 hm5C_site_38269 DeepMRMD:1;iRNA_m5C:0.99953671215799 38270 chr17 18167971 18167971 1 + C A THCA 18167953 + 18167933 18167973 41 TGCTCATCGGCAGCCTGGAGCAGGCCAGCCTGCCCTGCCAC TGCTCATCGGCAGCCTGGAGCAGGCCAGCCTGCCCTGCAAC < 41bp 1 0.572825049941811 1 0.916788816452026 experiment 0.854349900116378 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MIEF2 ENSG00000177427 CDS Human protein_coding chr17:18167953 chr17:18167971 nonsynonymous SNV 0.999 1 39 hm5C_associated_SNPs_38878 0 0 0 0 0 Endoplasmic reticulum 1 0.500231649762846 0.166422367095948 0.999536700474308 hm5C_site_38270 DeepMRMD:0.166422367095948;iRNA_m5C:0.999536700474308 38271 chr22 51044090 51044090 1 + C T THCA 51044075 + 51044055 51044095 41 AGGAGGACGACTTCTGGTTCCGTGGCTTCAACATGCGCACG AGGAGGACGACTTCTGGTTCCGTGGCTTCAACATGTGCACG < 41bp 1 0.335688377350402 1 0.412511676549911 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044075 chr22:51044090 nonsynonymous SNV 0.723 3 36 hm5C_associated_SNPs_38879 0 0 0 0 1 exosome 1 0.500231699132148 1 0.999536601735703 hm5C_site_38271 DeepMRMD:1;iRNA_m5C:0.999536601735703 38272 chr4 57340538 57340538 1 + A C THCA 57340545 + 57340525 57340565 41 ACCAGGCCATGAAAATCCTACAAAAAGCTGAAGGTTGGAAG ACCAGGCCATGAACATCCTACAAAAAGCTGAAGGTTGGAAG < 41bp 1 0.552699898325172 1 0.321429371833801 experiment 0.894600203349656 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340545 chr4:57340538 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_38880 0 0 1 0 2 Cytosol 1 0.500231643896286 1 0.999536712207429 hm5C_site_38272 DeepMRMD:1;iRNA_m5C:0.999536712207429 38273 chr1 180849246 180849246 1 + G A THCA 180849252 + 180849232 180849272 41 TCCGCCTGGAGAATGAACATCTGAATAACTGTGGTGAATTC TCCGCCTGGAGAATAAACATCTGAATAACTGTGGTGAATTC < 41bp 1 0.652181720440438 1 0.280246138572693 experiment 0.695636559119124 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XPR1 ENSG00000143324 CDS Human protein_coding chr1:180849252 chr1:180849246 nonsynonymous SNV 0.993 4 15 hm5C_associated_SNPs_38882 0 0 1 0 1 Ribosome 1 0.500232726328501 1 0.999534547342998 hm5C_site_38273 DeepMRMD:1;iRNA_m5C:0.999534547342998 38274 chrX 135106617 135106617 1 + G C THCA 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTATTTGGTGGTGGCACCACTCCAATGCTGTCATGCTT < 41bp 1 0.123491308550724 1 0.793520569801331 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106617 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_38883 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643893312 0.412958860397338 0.999536712213377 hm5C_site_38274 DeepMRMD:0.412958860397338;iRNA_m5C:0.999536712213377 38275 chr20 25198164 25198164 1 + C T THCA 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGGCACCCTGCAGGCCTCCCCACCCGGTTACCTGACGGC < 41bp 1 0.100962772680432 1 0.146734446287155 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198164 synonymous SNV . 0 30 hm5C_associated_SNPs_38884 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643977476 1 0.999536712045048 hm5C_site_38275 DeepMRMD:1;iRNA_m5C:0.999536712045048 38276 chr3 140140038 140140038 1 + G A THCA 140140054 + 140140034 140140074 41 CTACGACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG CTACAACTGTGGACAGAAGCCCGCTGCTCAGGACACCCTGG < 41bp 1 0.22582695407984 1 0.288837790489197 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140140054 chr3:140140038 nonsynonymous SNV 0.705 3 5 hm5C_associated_SNPs_38885 0 0 0 0 2 exosome 1 0.500231627600899 1 0.999536744798202 hm5C_site_38276 DeepMRMD:1;iRNA_m5C:0.999536744798202 38277 chr18 13056651 13056651 1 + A G THCA 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTCTGTTGGTACGAACTGTGGAATTGAACCAT < 41bp 1 0.133357237116094 1 0.346521526575089 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056651 synonymous SNV . 0 22 hm5C_associated_SNPs_38886 0 0 1 0 1 Nucleus 1 0.500231643921084 1 0.999536712157831 hm5C_site_38277 DeepMRMD:1;iRNA_m5C:0.999536712157831 38278 chr18 13056651 13056651 1 + A G THCA 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTCTGTTGGTACGAACTGTGGAATTGAACCATGGGA < 41bp 1 0.235013255688004 1 0.139818996191025 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056651 synonymous SNV . 0 18 hm5C_associated_SNPs_38887 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38278 DeepMRMD:1;iRNA_m5C:0.999536712157815 38279 chr14 75190043 75190043 1 + C G THCA 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTGTA < 41bp 1 0.696251664546681 1 0.156184643507004 experiment 0.607496670906638 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190043 nonsynonymous SNV 0.993 4 39 hm5C_associated_SNPs_38888 0 0 1 2 2 Nucleus 1 0.500231643915834 1 0.999536712168333 hm5C_site_38279 DeepMRMD:1;iRNA_m5C:0.999536712168333 38280 chr7 142460764 142460764 1 + G A THCA 142460745 + 142460725 142460765 41 TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGT TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAAT < 41bp 1 0.453954178838711 1 0.0665649175643921 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460745 chr7:142460764 nonsynonymous SNV 0.003 1 40 hm5C_associated_SNPs_38889 1 0 0 0 0 Cytosol 1 0.500231643921126 1 0.999536712157747 hm5C_site_38280 DeepMRMD:1;iRNA_m5C:0.999536712157747 not specified not specified 38281 chr7 142460764 142460764 1 + G A THCA 142460757 + 142460737 142460777 41 GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG GTGGTCTGCAATGGACAGCTCCAAGGAATTGTCTCCTGGGG < 41bp 1 0.288484322171466 1 0.652390241622925 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460757 chr7:142460764 nonsynonymous SNV 0.003 1 28 hm5C_associated_SNPs_38890 1 0 0 0 0 Cytosol 1 0.500231642586243 0.69521951675415 0.999536714827514 hm5C_site_38281 DeepMRMD:0.69521951675415;iRNA_m5C:0.999536714827514 not specified not specified 38282 chr7 142460764 142460764 1 + G A THCA 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTCTGCAATGGACAGCTCCAAGGAATTGTCTCCTGGGGT < 41bp 1 0.481254923413216 1 0.503956079483032 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460764 nonsynonymous SNV 0.003 1 27 hm5C_associated_SNPs_38891 1 0 0 0 0 Cytosol 1 0.500231643921003 0.992087841033936 0.999536712157995 hm5C_site_38282 DeepMRMD:0.992087841033936;iRNA_m5C:0.999536712157995 not specified not specified 38283 chr7 142460764 142460764 1 + G A THCA 142460769 + 142460749 142460789 41 GGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC GGACAGCTCCAAGGAATTGTCTCCTGGGGTGATGGCTGTGC < 41bp 1 0.603992179543635 1 0.756456732749939 experiment 0.79201564091273 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460769 chr7:142460764 nonsynonymous SNV 0.003 1 16 hm5C_associated_SNPs_38892 1 0 0 0 0 Cytosol 1 0.500231643921092 0.487086534500122 0.999536712157815 hm5C_site_38283 DeepMRMD:0.487086534500122;iRNA_m5C:0.999536712157815 not specified not specified 38284 chr7 142460764 142460764 1 + G A THCA 142460771 + 142460751 142460791 41 ACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC ACAGCTCCAAGGAATTGTCTCCTGGGGTGATGGCTGTGCCC < 41bp 1 0.287560121003107 1 0.819860696792603 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460771 chr7:142460764 nonsynonymous SNV 0.003 1 14 hm5C_associated_SNPs_38893 1 0 0 0 0 Cytosol 1 0.500231642808122 0.360278606414794 0.999536714383755 hm5C_site_38284 DeepMRMD:0.360278606414794;iRNA_m5C:0.999536714383755 not specified not specified 38285 chr7 142460764 142460764 1 + G A THCA 142460784 + 142460764 142460804 41 GTTGTCTCCTGGGGTGATGGCTGTGCCCAGAAGAACAAGCC ATTGTCTCCTGGGGTGATGGCTGTGCCCAGAAGAACAAGCC < 41bp 1 0.353228826380365 1 0.506304323673248 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460784 chr7:142460764 nonsynonymous SNV 0.003 1 1 hm5C_associated_SNPs_38895 1 0 0 0 0 Cytosol 1 0.500231643749662 0.987391352653504 0.999536712500676 hm5C_site_38285 DeepMRMD:0.987391352653504;iRNA_m5C:0.999536712500676 not specified not specified 38286 chr13 27216438 27216438 1 + C A THCA 27216436 + 27216416 27216456 41 AGTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAG AGTGAAGAGGAACATTGAGCCCAGGCACTTGTGCCGGGGAG < 41bp 1 0.439681088626314 1 0.574100971221924 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216436 chr13:27216438 synonymous SNV . 0 23 hm5C_associated_SNPs_38896 0 0 1 0 1 cytosol 1 0.500231643921092 0.851798057556152 0.999536712157815 hm5C_site_38286 DeepMRMD:0.851798057556152;iRNA_m5C:0.999536712157815 38287 chr13 27216438 27216438 1 + C A THCA 27216437 + 27216417 27216457 41 GTGAAGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGC GTGAAGAGGAACATTGAGCCCAGGCACTTGTGCCGGGGAGC < 41bp 1 0.465123639395356 1 0.750207424163818 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216437 chr13:27216438 synonymous SNV . 0 22 hm5C_associated_SNPs_38897 0 0 1 0 1 cytosol 1 0.500231706073415 0.499585151672364 0.999536587853169 hm5C_site_38287 DeepMRMD:0.499585151672364;iRNA_m5C:0.999536587853169 38288 chr13 27216438 27216438 1 + C A THCA 27216441 + 27216421 27216461 41 AGAGGAACATTGAGCCCCGGCACTTGTGCCGGGGAGCTCTG AGAGGAACATTGAGCCCAGGCACTTGTGCCGGGGAGCTCTG < 41bp 1 0.30998826463998 1 0.0748462378978729 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control WASF3 ENSG00000132970 CDS Human protein_coding chr13:27216441 chr13:27216438 synonymous SNV . 0 18 hm5C_associated_SNPs_38898 0 0 1 0 1 cytosol 1 0.500231643933313 1 0.999536712133374 hm5C_site_38288 DeepMRMD:1;iRNA_m5C:0.999536712133374 38289 chr5 32089581 32089581 1 + C A THCA 32089601 + 32089581 32089621 41 CGACAGAGGTTGCCCAACCACCCCTAAATCTCCTAAGTGTA AGACAGAGGTTGCCCAACCACCCCTAAATCTCCTAAGTGTA < 41bp 1 0.0626222789977179 1 0.11830073595047 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32089601 chr5:32089581 synonymous SNV . 0 1 hm5C_associated_SNPs_38900 0 0 0 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_38289 DeepMRMD:1;iRNA_m5C:0.999536712157815 38290 chr9 79996933 79996933 1 + G T THCA 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCTGTTCTTC < 41bp 1 0.456837402052805 1 0.568571746349335 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996933 nonsynonymous SNV 0.993 2 34 hm5C_associated_SNPs_38902 0 0 1 0 2 Nucleus 1 0.500231653251533 0.86285650730133 0.999536693496933 hm5C_site_38290 DeepMRMD:0.86285650730133;iRNA_m5C:0.999536693496933 38291 chr11 831585 831585 1 + G T THCA 831584 + 831564 831604 41 GGGACGCCTGCGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG GGGACGCCTGCGAGGCCAGGCTGGCGGGCAGCAGCTGCAGG < 41bp 1 0.598300097173699 1 0.279889464378357 experiment 0.803399805652601 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831584 chr11:831585 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_38903 0 0 1 0 1 Cytosol 1 0.500231643921097 1 0.999536712157805 hm5C_site_38291 DeepMRMD:1;iRNA_m5C:0.999536712157805 38292 chr17 73484957 73484957 1 + C A THCA 73484970 + 73484950 73484990 41 GCTTTTCCGTGTCCTTGAGACCCCTGTGATTGACAACATCA GCTTTTCAGTGTCCTTGAGACCCCTGTGATTGACAACATCA < 41bp 1 0.163718023829713 1 0.0467848181724548 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73484970 chr17:73484957 nonsynonymous SNV 0.988 2 8 hm5C_associated_SNPs_38904 0 0 0 0 1 Cytosol 1 0.500231603638247 1 0.999536792723505 hm5C_site_38292 DeepMRMD:1;iRNA_m5C:0.999536792723505 38293 chr21 45546831 45546831 1 + C A THCA 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACCTGAGATCAGGGTGACCTCACTCAGCTTCTCTCCCAC < 41bp 1 0.382506590958202 1 0.148713082075119 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546831 nonsynonymous SNV 0.525 1 28 hm5C_associated_SNPs_38905 0 0 1 0 2 Nucleus 1 0.500231643553422 1 0.999536712893156 hm5C_site_38293 DeepMRMD:1;iRNA_m5C:0.999536712893156 38294 chr19 19217123 19217123 1 + A G THCA 19217131 + 19217111 19217151 41 CGCACTGGCTGGAACGACAGCCGCTTCACTGACCTACCCCC CGCACTGGCTGGGACGACAGCCGCTTCACTGACCTACCCCC < 41bp 1 0.298823101345865 1 0.13551539182663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19217131 chr19:19217123 synonymous SNV . 0 13 hm5C_associated_SNPs_38906 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164392145 1 0.999536712157101 hm5C_site_38294 DeepMRMD:1;iRNA_m5C:0.999536712157101 38295 chr5 132400700 132400700 1 + C T THCA 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TTGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC < 41bp 1 0.455104515098049 1 0.434033215045929 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400700 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_38907 0 0 1 0 2 Cytosol 1 0.500231643921064 1 0.999536712157872 hm5C_site_38295 DeepMRMD:1;iRNA_m5C:0.999536712157872 38296 chr22 37420724 37420724 1 + T C THCA 37420712 + 37420692 37420732 41 AAGAGCCAACCTGCTCCCGCCGAGTTCCGCGCTCAGCTCGA AAGAGCCAACCTGCTCCCGCCGAGTTCCGCGCCCAGCTCGA < 41bp 1 0.434029322794821 1 0.487776041030884 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MPST ENSG00000128309 CDS Human protein_coding chr22:37420712 chr22:37420724 synonymous SNV . 0 33 hm5C_associated_SNPs_38908 0 0 1 0 0 chromatin 1 0.50023205150308 1 0.99953589699384 hm5C_site_38296 DeepMRMD:1;iRNA_m5C:0.99953589699384 38297 chr7 142460744 142460744 1 + G C THCA 142460726 + 142460706 142460746 41 TTCTTCCCCCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCA TTCTTCCCCCCAGGGTGATTCTGGTGGCCCTGTGGTCTCCA < 41bp 1 0.633682034902657 1 0.623376846313477 experiment 0.732635930194686 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460726 chr7:142460744 nonsynonymous SNV 0.046 4 39 hm5C_associated_SNPs_38909 0 0 0 0 0 Cytosol 1 0.500231643921092 0.753246307373046 0.999536712157815 hm5C_site_38297 DeepMRMD:0.753246307373046;iRNA_m5C:0.999536712157815 38298 chr7 142460744 142460744 1 + G C THCA 142460733 + 142460713 142460753 41 CCCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACA CCCCAGGGTGATTCTGGTGGCCCTGTGGTCTCCAATGGACA < 41bp 1 0.0895463689862648 1 0.0746774673461914 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460733 chr7:142460744 nonsynonymous SNV 0.046 4 32 hm5C_associated_SNPs_38910 0 0 0 0 0 Cytosol 1 0.500231643921324 1 0.999536712157351 hm5C_site_38298 DeepMRMD:1;iRNA_m5C:0.999536712157351 38299 chr7 142460744 142460744 1 + G C THCA 142460734 + 142460714 142460754 41 CCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAG CCCAGGGTGATTCTGGTGGCCCTGTGGTCTCCAATGGACAG < 41bp 1 0.114253067942685 1 0.0991932451725006 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460734 chr7:142460744 nonsynonymous SNV 0.046 4 31 hm5C_associated_SNPs_38911 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38299 DeepMRMD:1;iRNA_m5C:0.999536712157815 38300 chr7 142460744 142460744 1 + G C THCA 142460735 + 142460715 142460755 41 CCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGC CCAGGGTGATTCTGGTGGCCCTGTGGTCTCCAATGGACAGC < 41bp 1 0.44248250761736 1 0.11369714140892 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460735 chr7:142460744 nonsynonymous SNV 0.046 4 30 hm5C_associated_SNPs_38912 0 0 0 0 0 Cytosol 1 0.500231646658657 1 0.999536706682686 hm5C_site_38300 DeepMRMD:1;iRNA_m5C:0.999536706682686 38301 chr7 142460744 142460744 1 + G C THCA 142460745 + 142460725 142460765 41 TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGT TCTGGTGGCCCTGTGGTCTCCAATGGACAGCTCCAAGGAGT < 41bp 1 0.443739605314934 1 0.0843731462955475 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460745 chr7:142460744 nonsynonymous SNV 0.046 4 20 hm5C_associated_SNPs_38913 0 0 0 0 0 Cytosol 1 0.500231643919714 1 0.999536712160572 hm5C_site_38301 DeepMRMD:1;iRNA_m5C:0.999536712160572 38302 chr7 142460744 142460744 1 + G C THCA 142460757 + 142460737 142460777 41 GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG GTGGTCTCCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG < 41bp 1 0.245740747463705 1 0.550624549388885 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460757 chr7:142460744 nonsynonymous SNV 0.046 4 8 hm5C_associated_SNPs_38914 0 0 0 0 0 Cytosol 1 0.500231637708611 0.89875090122223 0.999536724582777 hm5C_site_38302 DeepMRMD:0.89875090122223;iRNA_m5C:0.999536724582777 38303 chr7 142460744 142460744 1 + G C THCA 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTCTCCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT < 41bp 1 0.449544920818773 1 0.382818460464478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460744 nonsynonymous SNV 0.046 4 7 hm5C_associated_SNPs_38915 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38303 DeepMRMD:1;iRNA_m5C:0.999536712157815 38304 chr7 142460752 142460752 1 + C G THCA 142460733 + 142460713 142460753 41 CCCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACA CCCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGAGA < 41bp 1 0.0905761260122454 1 0.0918053090572357 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460733 chr7:142460752 nonsynonymous SNV 0.002 1 40 hm5C_associated_SNPs_38916 0 0 0 0 0 Cytosol 1 0.50023164395001 1 0.99953671209998 hm5C_site_38304 DeepMRMD:1;iRNA_m5C:0.99953671209998 38305 chr7 142460752 142460752 1 + C G THCA 142460734 + 142460714 142460754 41 CCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAG CCCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGAGAG < 41bp 1 0.090561836166336 1 0.111406564712524 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460734 chr7:142460752 nonsynonymous SNV 0.002 1 39 hm5C_associated_SNPs_38917 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38305 DeepMRMD:1;iRNA_m5C:0.999536712157815 38306 chr7 142460752 142460752 1 + C G THCA 142460735 + 142460715 142460755 41 CCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGC CCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGAGAGC < 41bp 1 0.423245009130876 1 0.228900343179703 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460735 chr7:142460752 nonsynonymous SNV 0.002 1 38 hm5C_associated_SNPs_38918 0 0 0 0 0 Cytosol 1 0.500232072328837 1 0.999535855342327 hm5C_site_38306 DeepMRMD:1;iRNA_m5C:0.999535855342327 38307 chr7 142460752 142460752 1 + C G THCA 142460745 + 142460725 142460765 41 TCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGT TCTGGTGGCCCTGTGGTCTGCAATGGAGAGCTCCAAGGAGT < 41bp 1 0.450476487581379 1 0.0700764954090118 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460745 chr7:142460752 nonsynonymous SNV 0.002 1 28 hm5C_associated_SNPs_38919 0 0 0 0 0 Cytosol 1 0.500231644517358 1 0.999536710965284 hm5C_site_38307 DeepMRMD:1;iRNA_m5C:0.999536710965284 38308 chr7 142460752 142460752 1 + C G THCA 142460757 + 142460737 142460777 41 GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG GTGGTCTGCAATGGAGAGCTCCAAGGAGTTGTCTCCTGGGG < 41bp 1 0.338932166715152 1 0.766671121120453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460757 chr7:142460752 nonsynonymous SNV 0.002 1 16 hm5C_associated_SNPs_38920 0 0 0 0 0 Cytosol 1 0.500231642529894 0.466657757759094 0.999536714940213 hm5C_site_38308 DeepMRMD:0.466657757759094;iRNA_m5C:0.999536714940213 38309 chr7 142460752 142460752 1 + C G THCA 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTCTGCAATGGAGAGCTCCAAGGAGTTGTCTCCTGGGGT < 41bp 1 0.454646782129675 1 0.515390634536743 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460752 nonsynonymous SNV 0.002 1 15 hm5C_associated_SNPs_38921 0 0 0 0 0 Cytosol 1 0.500231643918907 0.969218730926514 0.999536712162186 hm5C_site_38309 DeepMRMD:0.969218730926514;iRNA_m5C:0.999536712162186 38310 chr7 142460752 142460752 1 + C G THCA 142460769 + 142460749 142460789 41 GGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC GGAGAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC < 41bp 1 0.621829710570548 1 0.797357559204102 experiment 0.756340578858904 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460769 chr7:142460752 nonsynonymous SNV 0.002 1 4 hm5C_associated_SNPs_38922 0 0 0 0 0 Cytosol 1 0.500231643921092 0.405284881591796 0.999536712157815 hm5C_site_38310 DeepMRMD:0.405284881591796;iRNA_m5C:0.999536712157815 38311 chr7 142460752 142460752 1 + C G THCA 142460771 + 142460751 142460791 41 ACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC AGAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC < 41bp 1 0.33627213461183 1 0.801301598548889 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460771 chr7:142460752 nonsynonymous SNV 0.002 1 2 hm5C_associated_SNPs_38923 0 0 0 0 0 Cytosol 1 0.500231643920706 0.397396802902222 0.999536712158587 hm5C_site_38311 DeepMRMD:0.397396802902222;iRNA_m5C:0.999536712158587 38312 chr6 26598831 26598831 1 + C A THCA 26598851 + 26598831 26598871 41 CTCAGAGAGCATGGAGGGACCTTCCCTTGTCAGGGACTCCT ATCAGAGAGCATGGAGGGACCTTCCCTTGTCAGGGACTCCT < 41bp 1 0.327029868833035 1 0.0657853186130524 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABT1 ENSG00000146109 CDS Human protein_coding chr6:26598851 chr6:26598831 synonymous SNV . 0 1 hm5C_associated_SNPs_38925 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38312 DeepMRMD:1;iRNA_m5C:0.999536712157815 38313 chr16 14038683 14038683 1 + C A THCA 14038675 + 14038655 14038695 41 AGCATCTGCAGATGTTTCCACTGACACTCGGAAAGCCGGTG AGCATCTGCAGATGTTTCCACTGACACTAGGAAAGCCGGTG < 41bp 1 0.227764972542031 1 0.449984967708588 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14038675 chr16:14038683 synonymous SNV . 0 29 hm5C_associated_SNPs_38926 0 0 0 0 1 Nucleus 1 0.500231643921097 1 0.999536712157807 hm5C_site_38313 DeepMRMD:1;iRNA_m5C:0.999536712157807 38314 chr17 38318284 38318284 1 + G A THCA 38318298 + 38318278 38318318 41 CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG CAAAGTAGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG < 41bp 1 0.225063970435597 1 0.0674554705619812 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318298 chr17:38318284 synonymous SNV . 0 7 hm5C_associated_SNPs_38927 0 0 1 0 1 Ribosome 1 0.500231643540029 1 0.999536712919941 hm5C_site_38314 DeepMRMD:1;iRNA_m5C:0.999536712919941 38315 chr17 38318284 38318284 1 + G A THCA 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TAGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT < 41bp 1 0.118964175573411 1 0.144172608852386 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318284 synonymous SNV . 0 2 hm5C_associated_SNPs_38928 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38315 DeepMRMD:1;iRNA_m5C:0.999536712157815 38316 chr17 76167692 76167692 1 + G A THCA 76167712 + 76167692 76167732 41 GCAGCCATCACCTTCAGCTTCTTTTCCATCTTCTCCTGGGT ACAGCCATCACCTTCAGCTTCTTTTCCATCTTCTCCTGGGT < 41bp 1 0.0473730642336691 1 0.0306771099567413 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167712 chr17:76167692 nonsynonymous SNV 0.839 4 1 hm5C_associated_SNPs_38929 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_38316 DeepMRMD:1;iRNA_m5C:0.999536712157818 38317 chr11 831564 831564 1 + G A THCA 831584 + 831564 831604 41 GGGACGCCTGCGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG AGGACGCCTGCGAGGCCAGGCGGGCGGGCAGCAGCTGCAGG < 41bp 1 0.655221245456246 1 0.757037699222565 experiment 0.689557509087507 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831584 chr11:831564 nonsynonymous SNV 0.299 0 1 hm5C_associated_SNPs_38930 0 0 1 0 1 Cytosol 1 0.500231643921093 0.48592460155487 0.999536712157815 hm5C_site_38317 DeepMRMD:0.48592460155487;iRNA_m5C:0.999536712157815 38318 chr1 120286533 120286533 1 + G T THCA 120286513 + 120286493 120286533 41 TTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCG TTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCT < 41bp 1 0.165350043776873 1 0.232030689716339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286513 chr1:120286533 nonsynonymous SNV 0.997 3 41 hm5C_associated_SNPs_38931 0 0 1 0 1 Ribosome 1 0.500231643768307 1 0.999536712463386 hm5C_site_38318 DeepMRMD:1;iRNA_m5C:0.999536712463386 38319 chr1 120286533 120286533 1 + G T THCA 120286514 + 120286494 120286534 41 TTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCGG TTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCTG < 41bp 1 0.448300640736089 1 0.187060207128525 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286514 chr1:120286533 nonsynonymous SNV 0.997 3 40 hm5C_associated_SNPs_38932 0 0 1 0 1 Ribosome 1 0.500231642757616 1 0.999536714484768 hm5C_site_38319 DeepMRMD:1;iRNA_m5C:0.999536714484768 38320 chr1 120286533 120286533 1 + G T THCA 120286518 + 120286498 120286538 41 TCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCGGCTGC TCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCTGCTGC < 41bp 1 0.667656801383117 1 0.914733409881592 experiment 0.664686397233767 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286518 chr1:120286533 nonsynonymous SNV 0.997 3 36 hm5C_associated_SNPs_38933 0 0 1 0 1 Ribosome 1 0.500231642189678 0.170533180236816 0.999536715620644 hm5C_site_38320 DeepMRMD:0.170533180236816;iRNA_m5C:0.999536715620644 38321 chr1 120286533 120286533 1 + G T THCA 120286535 + 120286515 120286555 41 TGGCAGAGGCAGGCGTGCGGCTGCTGTCCTACCAGACTTCA TGGCAGAGGCAGGCGTGCTGCTGCTGTCCTACCAGACTTCA < 41bp 1 0.633097195975526 1 0.598633706569672 experiment 0.733805608048948 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286535 chr1:120286533 nonsynonymous SNV 0.997 3 19 hm5C_associated_SNPs_38934 0 0 1 0 1 Ribosome 1 0.500227590153868 0.802732586860656 0.999544819692263 hm5C_site_38321 DeepMRMD:0.802732586860656;iRNA_m5C:0.999544819692263 38322 chr1 120286533 120286533 1 + G T THCA 120286542 + 120286522 120286562 41 GGCAGGCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGT GGCAGGCGTGCTGCTGCTGTCCTACCAGACTTCACTGGTGT < 41bp 1 0.0637607198805155 1 0.215826004743576 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286542 chr1:120286533 nonsynonymous SNV 0.997 3 12 hm5C_associated_SNPs_38935 0 0 1 0 1 Ribosome 1 0.500232355937172 1 0.999535288125655 hm5C_site_38322 DeepMRMD:1;iRNA_m5C:0.999535288125655 38323 chr1 120286533 120286533 1 + G T THCA 120286543 + 120286523 120286563 41 GCAGGCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGTC GCAGGCGTGCTGCTGCTGTCCTACCAGACTTCACTGGTGTC < 41bp 1 0.309630540336428 1 0.296985745429993 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286543 chr1:120286533 nonsynonymous SNV 0.997 3 11 hm5C_associated_SNPs_38936 0 0 1 0 1 Ribosome 1 0.500231643921076 1 0.999536712157847 hm5C_site_38323 DeepMRMD:1;iRNA_m5C:0.999536712157847 38324 chr1 120286533 120286533 1 + G T THCA 120286547 + 120286527 120286567 41 GCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGAT GCGTGCTGCTGCTGTCCTACCAGACTTCACTGGTGTCAGAT < 41bp 1 0.522094546702813 1 0.718738734722137 experiment 0.955810906594374 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286547 chr1:120286533 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_38937 0 0 1 0 1 Ribosome 1 0.50023165339459 0.562522530555726 0.99953669321082 hm5C_site_38324 DeepMRMD:0.562522530555726;iRNA_m5C:0.99953669321082 38325 chr1 120286533 120286533 1 + G T THCA 120286551 + 120286531 120286571 41 GCGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGATGGGG GCTGCTGCTGTCCTACCAGACTTCACTGGTGTCAGATGGGG < 41bp 1 0.502266370465684 1 0.54152250289917 experiment 0.995467259068632 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286551 chr1:120286533 nonsynonymous SNV 0.997 3 3 hm5C_associated_SNPs_38938 0 0 1 0 1 Ribosome 1 0.50023164392109 0.91695499420166 0.99953671215782 hm5C_site_38325 DeepMRMD:0.91695499420166;iRNA_m5C:0.99953671215782 38326 chr17 37360844 37360844 1 + G A THCA 37360846 + 37360826 37360866 41 CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCA CCGTGAAGAGCGCCTCCAAGCCAAGAAGGAGGAGATCATCA < 41bp 1 0.379960607136439 1 0.480041444301605 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360846 chr17:37360844 synonymous SNV . 0 19 hm5C_associated_SNPs_38939 0 0 1 0 1 chromatin 1 0.500231531513978 1 0.999536936972044 hm5C_site_38326 DeepMRMD:1;iRNA_m5C:0.999536936972044 38327 chr17 37360844 37360844 1 + G A THCA 37360862 + 37360842 37360882 41 CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA CAAGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA < 41bp 1 0.50563949506332 1 0.147246956825256 experiment 0.988721009873361 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360862 chr17:37360844 synonymous SNV . 0 3 hm5C_associated_SNPs_38940 0 0 1 0 1 chromatin 1 0.50023164349332 1 0.999536713013359 hm5C_site_38327 DeepMRMD:1;iRNA_m5C:0.999536713013359 38328 chr11 65063436 65063436 1 + C A THCA 65063444 + 65063424 65063464 41 TCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGAAGGTA TCCTCATCATCCAGTCAGAGCTGAGGTACTTCGTGAAGGTA < 41bp 1 0.318729301114236 1 0.152889162302017 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65063444 chr11:65063436 nonsynonymous SNV 0.327 4 13 hm5C_associated_SNPs_38941 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643984534 1 0.999536712030932 hm5C_site_38328 DeepMRMD:1;iRNA_m5C:0.999536712030932 38329 chr19 42373229 42373229 1 + C A THCA 42373215 + 42373195 42373235 41 CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCGGG CAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCAGCCGGG < 41bp 1 0.231859776357773 1 0.18306577205658 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373215 chr19:42373229 nonsynonymous SNV 0.971 2 35 hm5C_associated_SNPs_38942 0 0 1 0 1 Cytosol 1 0.500231485845717 1 0.999537028308567 hm5C_site_38329 DeepMRMD:1;iRNA_m5C:0.999537028308567 38330 chr19 42373229 42373229 1 + C A THCA 42373228 + 42373208 42373248 41 CGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCT CGAGGCTCCAAGAGTGTGGCCAGCCGGGTCCTCCAAGCCCT < 41bp 1 0.524905336825527 1 0.108057767152786 experiment 0.950189326348947 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373228 chr19:42373229 nonsynonymous SNV 0.971 2 22 hm5C_associated_SNPs_38943 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38330 DeepMRMD:1;iRNA_m5C:0.999536712157815 38331 chr19 42373229 42373229 1 + C A THCA 42373231 + 42373211 42373251 41 GGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGA GGCTCCAAGAGTGTGGCCAGCCGGGTCCTCCAAGCCCTGGA < 41bp 1 0.640898358584811 1 0.629151046276093 experiment 0.718203282830377 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373231 chr19:42373229 nonsynonymous SNV 0.971 2 19 hm5C_associated_SNPs_38944 0 0 1 0 1 Cytosol 1 0.500231643921092 0.741697907447814 0.999536712157815 hm5C_site_38331 DeepMRMD:0.741697907447814;iRNA_m5C:0.999536712157815 38332 chr19 42373229 42373229 1 + C A THCA 42373237 + 42373217 42373257 41 AAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCT AAGAGTGTGGCCAGCCGGGTCCTCCAAGCCCTGGAGGGGCT < 41bp 1 0.0490418234917364 1 0.128535807132721 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373237 chr19:42373229 nonsynonymous SNV 0.971 2 13 hm5C_associated_SNPs_38945 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38332 DeepMRMD:1;iRNA_m5C:0.999536712157815 38333 chr11 108196147 108196147 1 + C T THCA 108196145 + 108196125 108196165 41 GAGCCTATCATGGCTCTACGCACAGTCATTTTGGAGATCCT GAGCCTATCATGGCTCTACGCATAGTCATTTTGGAGATCCT < 41bp 1 0.123198033574516 1 0.17338690161705 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108196145 chr11:108196147 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_38946 0 0 1 0 0 Nucleus 1 0.500231654045912 1 0.999536691908175 hm5C_site_38333 DeepMRMD:1;iRNA_m5C:0.999536691908175 38334 chr15 43820887 43820887 1 + T C THCA 43820897 + 43820877 43820917 41 GCCTGACACATTGCTCTCCCCTGAGCAGCCAGTGTGTCCTG GCCTGACACACTGCTCTCCCCTGAGCAGCCAGTGTGTCCTG < 41bp 1 0.569166302497869 1 0.347376823425293 experiment 0.861667395004262 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1A ENSG00000166963 CDS Human protein_coding chr15:43820897 chr15:43820887 synonymous SNV . 0 11 hm5C_associated_SNPs_38947 0 0 0 0 0 nucleolus 1 0.500231891344187 1 0.999536217311625 hm5C_site_38334 DeepMRMD:1;iRNA_m5C:0.999536217311625 38335 chrX 152991422 152991422 1 + G A THCA 152991420 + 152991400 152991440 41 TACACCCTGCTTCGGGCGGCCCGCTCCCGTGGAGCCGGCAC TACACCCTGCTTCGGGCGGCCCACTCCCGTGGAGCCGGCAC < 41bp 1 0.0851620235377773 1 0.181271135807037 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCD1 ENSG00000101986 CDS Human protein_coding chrX:152991420 chrX:152991422 nonsynonymous SNV 0.041 1 23 hm5C_associated_SNPs_38948 0 0 0 0 0 nucleolus 1 0.500231643921083 1 0.999536712157833 hm5C_site_38335 DeepMRMD:1;iRNA_m5C:0.999536712157833 38336 chr7 142460374 142460374 1 + A G THCA 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATTACCAGCAACGTGTTCTGTGTGG < 41bp 1 0.170655340038131 1 0.113991230726242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460374 nonsynonymous SNV 0.060 5 29 hm5C_associated_SNPs_38950 0 0 0 0 2 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_38336 DeepMRMD:1;iRNA_m5C:0.99953671215782 38337 chr7 142460374 142460374 1 + A G THCA 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATTACCAGCAACGTGTTCTGTGTGGG < 41bp 1 0.67014818152186 1 0.535700023174286 experiment 0.659703636956281 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460374 nonsynonymous SNV 0.060 5 28 hm5C_associated_SNPs_38951 0 0 0 0 2 Cytosol 1 0.500230268927453 0.928599953651428 0.999539462145093 hm5C_site_38337 DeepMRMD:0.928599953651428;iRNA_m5C:0.999539462145093 38338 chr7 142460374 142460374 1 + A G THCA 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATTACCAGCAACGTGTTCTGTGTGGGCTT < 41bp 1 0.356943733605702 1 0.409237027168274 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460374 nonsynonymous SNV 0.060 5 25 hm5C_associated_SNPs_38952 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38338 DeepMRMD:1;iRNA_m5C:0.999536712157815 38339 chr7 142460374 142460374 1 + A G THCA 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGCAACGTGTTCTGTGTGGGCTTCCT < 41bp 1 0.277616456870392 1 0.0824940204620361 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460374 nonsynonymous SNV 0.060 5 22 hm5C_associated_SNPs_38953 0 0 0 0 2 Cytosol 1 0.500231643921099 1 0.999536712157801 hm5C_site_38339 DeepMRMD:1;iRNA_m5C:0.999536712157801 38340 chr7 142460374 142460374 1 + A G THCA 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGCAACGTGTTCTGTGTGGGCTTCCTTGAGGG < 41bp 1 0.345509325798488 1 0.260674327611923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460374 nonsynonymous SNV 0.060 5 16 hm5C_associated_SNPs_38954 0 0 0 0 2 Cytosol 1 0.500231643909719 1 0.999536712180561 hm5C_site_38340 DeepMRMD:1;iRNA_m5C:0.999536712180561 38341 chr7 142460374 142460374 1 + A G THCA 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACGTGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA < 41bp 1 0.118769075780963 1 0.110089659690857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460374 nonsynonymous SNV 0.060 5 7 hm5C_associated_SNPs_38955 0 0 0 0 2 Cytosol 1 0.500231643920668 1 0.999536712158665 hm5C_site_38341 DeepMRMD:1;iRNA_m5C:0.999536712158665 38342 chr7 142460374 142460374 1 + A G THCA 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACGTGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC < 41bp 1 0.0343921542764415 1 0.0844079852104187 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460374 nonsynonymous SNV 0.060 5 4 hm5C_associated_SNPs_38956 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_38342 DeepMRMD:1;iRNA_m5C:0.999536712157815 38343 chr7 142460374 142460374 1 + A G THCA 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACGTGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA < 41bp 1 0.582975528190895 1 0.398642778396606 experiment 0.83404894361821 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460374 nonsynonymous SNV 0.060 5 3 hm5C_associated_SNPs_38957 0 0 0 0 2 Cytosol 1 0.500231660889376 1 0.999536678221249 hm5C_site_38343 DeepMRMD:1;iRNA_m5C:0.999536678221249 38344 chr6 32134709 32134709 1 + G A THCA 32134701 + 32134681 32134721 41 CCTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTC CCTCAGCCATCTGCGCCAAGCCTTGCCTAAACGGAGGCGTC < 41bp 1 0.0548343131209463 1 0.0493583381175995 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134701 chr6:32134709 synonymous SNV . 0 29 hm5C_associated_SNPs_38958 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38344 DeepMRMD:1;iRNA_m5C:0.999536712157815 38345 chr6 32134709 32134709 1 + G A THCA 32134702 + 32134682 32134722 41 CTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTCT CTCAGCCATCTGCGCCAAGCCTTGCCTAAACGGAGGCGTCT < 41bp 1 0.195635745102084 1 0.0839748084545135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134702 chr6:32134709 synonymous SNV . 0 28 hm5C_associated_SNPs_38959 0 0 1 0 2 chromatin 1 0.500231643927437 1 0.999536712145125 hm5C_site_38345 DeepMRMD:1;iRNA_m5C:0.999536712145125 38346 chr16 83948910 83948910 1 + T C THYM 83948906 + 83948886 83948926 41 AGAACGGGGCGGTGCTGTGGCGCATCAACTGGATGGCGGAT AGAACGGGGCGGTGCTGTGGCGCACCAACTGGATGGCGGAT < 41bp 1 0.357399539911534 1 0.185688078403473 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MLYCD ENSG00000103150 CDS Human protein_coding chr16:83948906 chr16:83948910 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_38960 0 0 0 0 0 nucleolus 1 0.500231643921108 1 0.999536712157784 hm5C_site_38346 DeepMRMD:1;iRNA_m5C:0.999536712157784 38347 chr19 17887069 17887069 1 + G T THYM 17887060 + 17887040 17887080 41 CCCACTTTGTCCACAGGGCACCATGAAACGCCATTCTTCAC CCCACTTTGTCCACAGGGCACCATGAAACTCCATTCTTCAC < 41bp 1 0.0554993991516562 1 0.0338121056556702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887060 chr19:17887069 nonsynonymous SNV 0.996 2 30 hm5C_associated_SNPs_38961 0 0 1 0 2 Cytosol 1 0.500231653056282 1 0.999536693887435 hm5C_site_38347 DeepMRMD:1;iRNA_m5C:0.999536693887435 38348 chr15 73996773 73996773 1 + C T THYM 73996758 + 73996738 73996778 41 GCGAATGGCACCTACAGCTGCCTGGTGCGCAACCCCGTGCT GCGAATGGCACCTACAGCTGCCTGGTGCGCAACCCTGTGCT < 41bp 1 0.197728083297563 1 0.149650871753693 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD276 ENSG00000103855 CDS Human protein_coding chr15:73996758 chr15:73996773 synonymous SNV . 0 36 hm5C_associated_SNPs_38962 0 0 0 0 1 Ribosome 1 0.500231643923153 1 0.999536712153694 hm5C_site_38348 DeepMRMD:1;iRNA_m5C:0.999536712153694 38349 chr19 58758153 58758153 1 + C T THYM 58758154 + 58758134 58758174 41 GCAGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCT GCAGGGCAGAGCAGGAGGCTCCCCGAGGTAAGAGCAGACCT < 41bp 1 0.507226173068039 1 0.44049260020256 experiment 0.985547653863922 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758154 chr19:58758153 nonsynonymous SNV 0.039 0 20 hm5C_associated_SNPs_38963 0 0 1 0 3 chromatin 1 0.500231650683363 1 0.999536698633274 hm5C_site_38349 DeepMRMD:1;iRNA_m5C:0.999536698633274 38350 chr19 58758153 58758153 1 + C T THYM 58758156 + 58758136 58758176 41 AGGGCAGAGCAGGAGGCCCCCCGAGGTAAGAGCAGACCTTG AGGGCAGAGCAGGAGGCTCCCCGAGGTAAGAGCAGACCTTG < 41bp 1 0.661915133057184 1 0.780479669570923 experiment 0.676169733885633 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58758156 chr19:58758153 nonsynonymous SNV 0.039 0 18 hm5C_associated_SNPs_38964 0 0 1 0 3 chromatin 1 0.500231644041443 0.439040660858154 0.999536711917113 hm5C_site_38350 DeepMRMD:0.439040660858154;iRNA_m5C:0.999536711917113 38351 chr10 75871847 75871847 1 + G T THYM 75871841 + 75871821 75871861 41 TGGCCGCGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG TGGCCGCGGCTCAGTCCTTGCATCGGTAAGCTACCAAGTGG < 41bp 1 0.407896640558421 1 0.205536723136902 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871841 chr10:75871847 stopgain 1.000 1 27 hm5C_associated_SNPs_38965 0 0 1 0 1 Nucleus 1 0.50023164378946 1 0.99953671242108 hm5C_site_38351 DeepMRMD:1;iRNA_m5C:0.99953671242108 38352 chrX 48417377 48417377 1 + G A THYM 48417383 + 48417363 48417403 41 CATCACTGACGACTGCCGCCCTGCCCTTTACACAGTCCATC CATCACTGACGACTACCGCCCTGCCCTTTACACAGTCCATC < 41bp 1 0.177782809639994 1 0.0201200246810913 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48417383 chrX:48417377 nonsynonymous SNV 0.981 1 15 hm5C_associated_SNPs_38966 0 0 1 0 2 nucleolus 1 0.500231643959067 1 0.999536712081867 hm5C_site_38352 DeepMRMD:1;iRNA_m5C:0.999536712081867 38353 chr1 150297442 150297442 1 + G T THYM 150297437 + 150297417 150297457 41 GGGAGCTGGATGAGCTGAAACCATGGATAGAGAAGACAGTG GGGAGCTGGATGAGCTGAAACCATGTATAGAGAAGACAGTG < 41bp 1 0.315069739685061 1 0.159809052944183 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150297437 chr1:150297442 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_38969 0 0 1 0 2 Nucleus 1 0.500231434686992 1 0.999537130626017 hm5C_site_38353 DeepMRMD:1;iRNA_m5C:0.999537130626017 38354 chr1 168014221 168014221 1 + G T THYM 168014224 + 168014204 168014244 41 TTGATCGCTCTTGTGGGGTTCCAGAAGAATCTGCTTCATCT TTGATCGCTCTTGTGGGTTTCCAGAAGAATCTGCTTCATCT < 41bp 1 0.515197338061415 1 0.696455001831055 experiment 0.96960532387717 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168014224 chr1:168014221 nonsynonymous SNV 0.965 1 18 hm5C_associated_SNPs_38970 0 0 1 0 1 Cytosol 1 0.500231643925193 0.60708999633789 0.999536712149615 hm5C_site_38354 DeepMRMD:0.60708999633789;iRNA_m5C:0.999536712149615 38355 chr17 79414094 79414094 1 + G T THYM 79414114 + 79414094 79414134 41 GGCCTGGGCTTCTCCCTACCCTCAGACGTGCACTCTTCTAA TGCCTGGGCTTCTCCCTACCCTCAGACGTGCACTCTTCTAA < 41bp 1 0.294486728680873 1 0.520003080368042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79414114 chr17:79414094 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_38971 0 0 1 0 1 chromatin 1 0.500231643921092 0.959993839263916 0.999536712157815 hm5C_site_38355 DeepMRMD:0.959993839263916;iRNA_m5C:0.999536712157815 38356 chr11 61488195 61488195 1 + C T THYM 61488204 + 61488184 61488224 41 GGTCTATAACCCGCACGAGGCCTGCTCCCTGAACCTGGTGG GGTCTATAACCTGCACGAGGCCTGCTCCCTGAACCTGGTGG < 41bp 1 0.0401930970356545 1 0.0167202055454254 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61488204 chr11:61488195 nonsynonymous SNV 0.949 1 12 hm5C_associated_SNPs_38972 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921106 1 0.999536712157788 hm5C_site_38356 DeepMRMD:1;iRNA_m5C:0.999536712157788 38357 chr19 50339175 50339175 1 + G T THYM 50339162 + 50339142 50339182 41 TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTTCGAAGCC < 41bp 1 0.016946517223324 1 0.0293571650981903 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339162 chr19:50339175 synonymous SNV 0.992 0 34 hm5C_associated_SNPs_38973 0 0 1 0 1 chromatin 1 0.500231643920168 1 0.999536712159664 hm5C_site_38357 DeepMRMD:1;iRNA_m5C:0.999536712159664 38358 chr19 50339175 50339175 1 + G T THYM 50339163 + 50339143 50339183 41 CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTTCGAAGCCT < 41bp 1 0.121937133283748 1 0.0454345345497131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339163 chr19:50339175 synonymous SNV 0.992 0 33 hm5C_associated_SNPs_38974 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_38358 DeepMRMD:1;iRNA_m5C:0.999536712157815 38359 chr2 173352764 173352764 1 + G T THYM 173352763 + 173352743 173352783 41 TGAACTGCTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA TGAACTGCTTTTATCGGTCTCTGGGTAAGTGTTTGTGTTTA < 41bp 1 0.628844875652239 1 0.720859706401825 experiment 0.742310248695522 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173352763 chr2:173352764 synonymous SNV . 0 22 hm5C_associated_SNPs_38975 0 0 1 0 3 Nucleus 1 0.500231649881912 0.55828058719635 0.999536700236176 hm5C_site_38359 DeepMRMD:0.55828058719635;iRNA_m5C:0.999536700236176 38360 chr6 7579946 7579946 1 + A T THYM 7579952 + 7579932 7579972 41 AGATTGAAAGGTTGAGGGTTCTACTGCAGGAAGAAGGCACC AGATTGAAAGGTTGTGGGTTCTACTGCAGGAAGAAGGCACC < 41bp 1 0.204124383572623 1 0.296946465969086 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579952 chr6:7579946 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_38977 0 0 1 0 1 Nucleus 1 0.500231643761766 1 0.999536712476469 hm5C_site_38360 DeepMRMD:1;iRNA_m5C:0.999536712476469 38361 chr15 96875650 96875650 1 + A C THYM 96875664 + 96875644 96875684 41 AAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGC AAGCGCCGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGC < 41bp 1 0.515078014193275 1 0.437462896108627 experiment 0.969843971613449 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F2 ENSG00000185551 CDS Human protein_coding chr15:96875664 chr15:96875650 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_38978 0 0 1 0 0 Cytoplasm 1 0.500231643922408 1 0.999536712155183 hm5C_site_38361 DeepMRMD:1;iRNA_m5C:0.999536712155183 38362 chr7 150817216 150817216 1 + G T THYM 150817203 + 150817183 150817223 41 CCCCCACACCCATCCGAAAGCAGTCCAAGCGGCGCTCCAAC CCCCCACACCCATCCGAAAGCAGTCCAAGCGGCTCTCCAAC < 41bp 1 0.13555825250651 1 0.859744012355804 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150817203 chr7:150817216 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_38979 0 0 1 0 1 Cytosol 1 0.500231643921093 0.280511975288392 0.999536712157815 hm5C_site_38362 DeepMRMD:0.280511975288392;iRNA_m5C:0.999536712157815 38363 chr22 51160631 51160631 1 + C T THYM 51160617 + 51160597 51160637 41 CAGCACCACGCCGCCTCTGCCGGGCTGGCCTCTGCCGCCGG CAGCACCACGCCGCCTCTGCCGGGCTGGCCTCTGTCGCCGG < 41bp 1 0.628509642115654 1 0.83190244436264 experiment 0.742980715768692 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51160617 chr22:51160631 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_38980 0 0 0 0 0 cytosol 1 0.500231643704244 0.33619511127472 0.999536712591512 hm5C_site_38363 DeepMRMD:0.33619511127472;iRNA_m5C:0.999536712591512 38364 chr1 10231345 10231345 1 + G T THYM 10231351 + 10231331 10231371 41 GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGC GATATTTACTTACATCTGGACTGTGCTCGGTTCGCGAAAGC < 41bp 1 0.227663848847563 1 0.107023864984512 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10231351 chr1:10231345 nonsynonymous SNV 0.995 1 15 hm5C_associated_SNPs_38981 0 0 1 1 1 Cytosol 1 0.500231632712565 1 0.999536734574871 hm5C_site_38364 DeepMRMD:1;iRNA_m5C:0.999536734574871 38365 chr3 39126157 39126157 1 + G A THYM 39126143 + 39126123 39126163 41 TTTCTTTTGATAGATGTTAACTATTACTTTGGATGAAAGTG TTTCTTTTGATAGATGTTAACTATTACTTTGGATAAAAGTG < 41bp 1 0.0952188238910857 1 0.104188770055771 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39126143 chr3:39126157 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_38982 0 0 1 0 2 Ribosome 1 0.50023164689039 1 0.999536706219219 hm5C_site_38365 DeepMRMD:1;iRNA_m5C:0.999536706219219 38366 chr8 21851902 21851902 1 + T C THYM 21851912 + 21851892 21851932 41 GTAAGAGACCTGAGAGGGATCGCTTTCGCTTTCAATGCCAA GTAAGAGACCCGAGAGGGATCGCTTTCGCTTTCAATGCCAA < 41bp 1 0.22407279406258 1 0.137778371572495 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21851912 chr8:21851902 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_38983 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38366 DeepMRMD:1;iRNA_m5C:0.999536712157815 38367 chr19 11141493 11141493 1 + G A THYM 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCAGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC < 41bp 1 0.434340924985639 1 0.586839556694031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141493 nonsynonymous SNV 0.918 4 8 hm5C_associated_SNPs_38984 0 0 1 0 2 Nucleus 1 0.500231643921092 0.826320886611938 0.999536712157815 hm5C_site_38367 DeepMRMD:0.826320886611938;iRNA_m5C:0.999536712157815 38368 chr17 48746581 48746581 1 + C T THYM 48746567 + 48746547 48746587 41 CCTGTGGGCTGTGGGAAGTCCTCCCTGGTGTCTGCCCTGCT CCTGTGGGCTGTGGGAAGTCCTCCCTGGTGTCTGTCCTGCT < 41bp 1 0.351331634701047 1 0.859007596969604 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48746567 chr17:48746581 nonsynonymous SNV 0.997 5 35 hm5C_associated_SNPs_38985 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.281984806060792 0.999536712157815 hm5C_site_38368 DeepMRMD:0.281984806060792;iRNA_m5C:0.999536712157815 38369 chr22 44379823 44379823 1 + G T THYM 44379837 + 44379817 44379857 41 TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA TACCTTTGGGGACCCACAAGCATCCGCGGATTCAGCATGCA < 41bp 1 0.204078801337514 1 0.375349313020706 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379837 chr22:44379823 nonsynonymous SNV 0.024 4 7 hm5C_associated_SNPs_38987 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38369 DeepMRMD:1;iRNA_m5C:0.999536712157815 38370 chr11 47600859 47600859 1 + C T THYM 47600875 + 47600855 47600895 41 GAGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG GAGGTGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG < 41bp 1 0.0851340429118119 1 0.126849859952927 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600875 chr11:47600859 nonsynonymous SNV 0.824 1 5 hm5C_associated_SNPs_38988 0 0 1 0 2 Ribosome 1 0.500231643922743 1 0.999536712154514 hm5C_site_38370 DeepMRMD:1;iRNA_m5C:0.999536712154514 38371 chr17 43214063 43214063 1 + G T THYM 43214071 + 43214051 43214091 41 GCCCCCAGGGACGCCTGGAACAGTCTGGGCAAGATGAGCAG GCCCCCAGGGACTCCTGGAACAGTCTGGGCAAGATGAGCAG < 41bp 1 0.554504719184913 1 0.237606257200241 experiment 0.890990561630174 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43214071 chr17:43214063 nonsynonymous SNV 0.986 4 13 hm5C_associated_SNPs_38990 0 0 1 0 2 Cytosol 1 0.500231643921126 1 0.999536712157748 hm5C_site_38371 DeepMRMD:1;iRNA_m5C:0.999536712157748 38372 chr16 2815546 2815546 1 + A G THYM 2815529 + 2815509 2815549 41 ACATCCGCCCAAATCCAGAACTGCTCGCAGAGGTTCCAGGT ACATCCGCCCAAATCCAGAACTGCTCGCAGAGGTTCCGGGT < 41bp 1 0.173993471752447 1 0.107635676860809 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2815529 chr16:2815546 nonsynonymous SNV 0.999 3 38 hm5C_associated_SNPs_38992 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38372 DeepMRMD:1;iRNA_m5C:0.999536712157815 38373 chr2 100009524 100009524 1 + T G THYM 100009522 + 100009502 100009542 41 ACATTGGCTGGTTTACCCCTCCTTGTGGCTTATAAAGAAGA ACATTGGCTGGTTTACCCCTCCGTGTGGCTTATAAAGAAGA < 41bp 1 0.130814422929175 1 0.485038697719574 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100009522 chr2:100009524 nonsynonymous SNV 0.926 2 23 hm5C_associated_SNPs_38993 0 0 1 0 2 Ribosome 1 0.500223857474811 1 0.999552285050379 hm5C_site_38373 DeepMRMD:1;iRNA_m5C:0.999552285050379 38374 chr9 134354747 134354747 1 + C A THYM 134354743 + 134354723 134354763 41 GACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG GACGTGACCGTGCCTGGCAGCAGCATGGGCACTGAGATCTG < 41bp 1 0.680276253056633 1 0.846490979194641 experiment 0.639447493886735 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354743 chr9:134354747 nonsynonymous SNV 0.835 3 25 hm5C_associated_SNPs_38994 0 0 1 0 0 Nucleus 1 0.500231650330993 0.307018041610718 0.999536699338013 hm5C_site_38374 DeepMRMD:0.307018041610718;iRNA_m5C:0.999536699338013 38375 chr15 64424072 64424072 1 + G A THYM 64424067 + 64424047 64424087 41 GCTGAGCTCCTGAGTGACTACATTCGCCTCCTGGCCATAGT GCTGAGCTCCTGAGTGACTACATTCACCTCCTGGCCATAGT < 41bp 1 0.0673662944929464 1 0.0652013421058655 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64424067 chr15:64424072 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_38995 0 0 1 0 1 Ribosome 1 0.500231643923362 1 0.999536712153276 hm5C_site_38375 DeepMRMD:1;iRNA_m5C:0.999536712153276 38376 chr19 54969669 54969669 1 + C T THYM 54969650 + 54969630 54969670 41 ATGTCTGGCTACCTCGTGGACAAGTTTGCAGATCGGGAGCG ATGTCTGGCTACCTCGTGGACAAGTTTGCAGATCGGGAGTG < 41bp 1 0.44002775135332 1 0.158449918031693 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969650 chr19:54969669 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_38996 0 0 1 0 1 chromatin 1 0.500231643921121 1 0.999536712157759 hm5C_site_38376 DeepMRMD:1;iRNA_m5C:0.999536712157759 38377 chr19 54969669 54969669 1 + C T THYM 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGTGCAAGGTCGCCCTCAAGGCCATGATCAAAAC < 41bp 1 0.131683868152986 1 0.200230777263641 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969669 nonsynonymous SNV 0.999 4 10 hm5C_associated_SNPs_38997 0 0 1 0 1 chromatin 1 0.500228869797585 1 0.999542260404829 hm5C_site_38377 DeepMRMD:1;iRNA_m5C:0.999542260404829 38378 chr19 39915613 39915613 1 + C T THYM 39915618 + 39915598 39915638 41 TGCCCTCTCCAGATACCTGGCAGCCTCATATATCAGCCAGA TGCCCTCTCCAGATATCTGGCAGCCTCATATATCAGCCAGA < 41bp 1 0.169576792674583 1 0.0770156383514404 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39915618 chr19:39915613 synonymous SNV . 0 16 hm5C_associated_SNPs_38998 0 0 0 0 0 Nucleus 1 0.500231643920683 1 0.999536712158635 hm5C_site_38378 DeepMRMD:1;iRNA_m5C:0.999536712158635 38379 chr11 66627141 66627141 1 + G T THYM 66627122 + 66627102 66627142 41 CTGCAGGATTGTCCCAGCCTCCAGCCACCACTTCCTGCTGA CTGCAGGATTGTCCCAGCCTCCAGCCACCACTTCCTGCTTA < 41bp 1 0.210709927530226 1 0.455601066350937 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627122 chr11:66627141 synonymous SNV . 0 40 hm5C_associated_SNPs_38999 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_38379 DeepMRMD:1;iRNA_m5C:0.999536712157815 38380 chr11 66627141 66627141 1 + G T THYM 66627129 + 66627109 66627149 41 ATTGTCCCAGCCTCCAGCCACCACTTCCTGCTGAAGCACCT ATTGTCCCAGCCTCCAGCCACCACTTCCTGCTTAAGCACCT < 41bp 1 0.0754837564240763 1 0.0474924147129059 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627129 chr11:66627141 synonymous SNV . 0 33 hm5C_associated_SNPs_39000 0 0 1 0 1 Ribosome 1 0.500231576612337 1 0.999536846775326 hm5C_site_38380 DeepMRMD:1;iRNA_m5C:0.999536846775326 38381 chr8 77619808 77619808 1 + G T THYM 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCCTGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC < 41bp 1 0.21021137037411 1 0.496863484382629 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619808 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_39001 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38381 DeepMRMD:1;iRNA_m5C:0.999536712157815 38382 chr1 154248118 154248118 1 + C G THYM 154248129 + 154248109 154248149 41 CCTCCAGCCCTGGATGATGCCTTTTCCATCCTGGACTTATT CCTCCAGCCGTGGATGATGCCTTTTCCATCCTGGACTTATT < 41bp 1 0.0943439604532753 1 0.0476617515087128 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAX1 ENSG00000143575 CDS Human protein_coding chr1:154248129 chr1:154248118 nonsynonymous SNV 0.579 3 10 hm5C_associated_SNPs_39002 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38382 DeepMRMD:1;iRNA_m5C:0.999536712157815 38383 chr4 6606797 6606797 1 + G T THYM 6606785 + 6606765 6606805 41 TCCTGCTGGCCTTGCAGATCCAGAACTCAACAGAGACCCCA TCCTGCTGGCCTTGCAGATCCAGAACTCAACATAGACCCCA < 41bp 1 0.594082534834702 1 0.335415959358215 experiment 0.811834930330595 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6606785 chr4:6606797 stopgain 0.005 0 33 hm5C_associated_SNPs_39003 0 0 0 0 1 Endoplasmic reticulum 1 0.500231647707615 1 0.999536704584771 hm5C_site_38383 DeepMRMD:1;iRNA_m5C:0.999536704584771 38384 chr9 96026294 96026294 1 + C A THYM 96026292 + 96026272 96026312 41 TCGACTTGGACGGGGACGCACCCGATGAAATTGCCACGTAT TCGACTTGGACGGGGACGCACCAGATGAAATTGCCACGTAT < 41bp 1 0.39794700882281 1 0.464355558156967 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96026292 chr9:96026294 synonymous SNV . 0 23 hm5C_associated_SNPs_39004 0 0 1 0 2 Nucleus 1 0.500231656248059 1 0.999536687503881 hm5C_site_38384 DeepMRMD:1;iRNA_m5C:0.999536687503881 38385 chr15 40863928 40863928 1 + C A THYM 40863922 + 40863902 40863942 41 GACAAGCCTTCCTCCATTCCCGTTCACCCCTGTGGCCGCTT GACAAGCCTTCCTCCATTCCCGTTCAACCCTGTGGCCGCTT < 41bp 1 0.0747417756512476 1 0.0556477904319763 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40863922 chr15:40863928 nonsynonymous SNV 0.993 4 27 hm5C_associated_SNPs_39005 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38385 DeepMRMD:1;iRNA_m5C:0.999536712157815 38386 chr19 10886517 10886517 1 + C T THYM 10886497 + 10886477 10886517 41 CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAC CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAT < 41bp 1 0.189544017457159 1 0.140782833099365 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886497 chr19:10886517 nonsynonymous SNV 0.225 5 41 hm5C_associated_SNPs_39006 0 0 1 0 1 Nucleus 1 0.500231643885404 1 0.999536712229193 hm5C_site_38386 DeepMRMD:1;iRNA_m5C:0.999536712229193 38387 chr22 35719878 35719878 1 + G T THYM 35719884 + 35719864 35719904 41 CCATACTCTCCGGTGACACGCCCATAGCACCAACCCCGGAA CCATACTCTCCGGTTACACGCCCATAGCACCAACCCCGGAA < 41bp 1 0.175498585644198 1 0.132213473320007 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35719884 chr22:35719878 nonsynonymous SNV 0.070 2 15 hm5C_associated_SNPs_39007 0 0 1 0 1 Cytosol 1 0.500231643912928 1 0.999536712174144 hm5C_site_38387 DeepMRMD:1;iRNA_m5C:0.999536712174144 38388 chr16 50655550 50655550 1 + C T THYM 50655547 + 50655527 50655567 41 GAGAAGACTGACGGGCTGGGCAGCGGAGATGAGAAGAAGAT GAGAAGACTGACGGGCTGGGCAGTGGAGATGAGAAGAAGAT < 41bp 1 0.273015982273613 1 0.464475333690643 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NKD1 ENSG00000140807 CDS Human protein_coding chr16:50655547 chr16:50655550 synonymous SNV . 0 24 hm5C_associated_SNPs_39008 0 0 1 0 2 chromatin 1 0.500231643661891 1 0.999536712676218 hm5C_site_38388 DeepMRMD:1;iRNA_m5C:0.999536712676218 38389 chr1 109772147 109772147 1 + G T THYM 109772129 + 109772109 109772149 41 GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGAG GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGATAG < 41bp 1 0.604103423698463 1 0.28643411397934 experiment 0.791793152603073 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772129 chr1:109772147 stopgain 0.988 1 39 hm5C_associated_SNPs_39009 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38389 DeepMRMD:1;iRNA_m5C:0.999536712157815 38390 chr10 75551827 75551827 1 + G T THYM 75551836 + 75551816 75551856 41 TGCTGGGCCCGGGCCCTGCCCTCTCGGCCAGGTGCCTCCCG TGCTGGGCCCGTGCCCTGCCCTCTCGGCCAGGTGCCTCCCG < 41bp 1 0.323868016354223 1 0.153413683176041 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75551836 chr10:75551827 synonymous SNV . 0 12 hm5C_associated_SNPs_39011 0 0 1 0 0 Cytosol 1 0.500231686274083 1 0.999536627451834 hm5C_site_38390 DeepMRMD:1;iRNA_m5C:0.999536627451834 38391 chr17 61907730 61907730 1 + G T THYM 61907746 + 61907726 61907766 41 GGTGGAGAAAGTACCAGATTCAACTTATGAGATGATTGGTG GGTGTAGAAAGTACCAGATTCAACTTATGAGATGATTGGTG < 41bp 1 0.379410704718763 1 0.464023500680923 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907746 chr17:61907730 stopgain 0.999 1 5 hm5C_associated_SNPs_39012 0 0 1 0 1 Ribosome 1 0.500231643921325 1 0.99953671215735 hm5C_site_38391 DeepMRMD:1;iRNA_m5C:0.99953671215735 38392 chr17 61907730 61907730 1 + G T THYM 61907749 + 61907729 61907769 41 GGAGAAAGTACCAGATTCAACTTATGAGATGATTGGTGGAC GTAGAAAGTACCAGATTCAACTTATGAGATGATTGGTGGAC < 41bp 1 0.267899045315552 1 0.10838919878006 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907749 chr17:61907730 stopgain 0.999 1 2 hm5C_associated_SNPs_39013 0 0 1 0 1 Ribosome 1 0.500231643920682 1 0.999536712158635 hm5C_site_38392 DeepMRMD:1;iRNA_m5C:0.999536712158635 38393 chr6 26124558 26124558 1 + G T THYM 26124556 + 26124536 26124576 41 TTCCCGGTGGGCCGAGTGCACCGCCTGCTCCGTAAAGGCAA TTCCCGGTGGGCCGAGTGCACCTCCTGCTCCGTAAAGGCAA < 41bp 1 0.250936838342247 1 0.0767993628978729 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AC ENSG00000180573 CDS Human protein_coding chr6:26124556 chr6:26124558 nonsynonymous SNV 0.956 4 23 hm5C_associated_SNPs_39014 0 0 1 0 0 Ribosome 1 0.500231643921095 1 0.999536712157811 hm5C_site_38393 DeepMRMD:1;iRNA_m5C:0.999536712157811 38394 chr17 78082391 78082391 1 + G A THYM 78082400 + 78082380 78082420 41 AACATGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGG AACATGACCAGAGCCCACTTCCCCCTGGTGAGTTGGGGTGG < 41bp 1 0.231624161460162 1 0.229816108942032 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082400 chr17:78082391 synonymous SNV . 0 12 hm5C_associated_SNPs_39016 0 0 0 0 1 Endoplasmic reticulum 1 0.502688208465768 1 0.994623583068463 hm5C_site_38394 DeepMRMD:1;iRNA_m5C:0.994623583068463 38395 chr17 78082391 78082391 1 + G A THYM 78082404 + 78082384 78082424 41 TGACCAGGGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC TGACCAGAGCCCACTTCCCCCTGGTGAGTTGGGGTGGTGGC < 41bp 1 0.588237139910753 1 0.363253653049469 experiment 0.823525720178494 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78082404 chr17:78082391 synonymous SNV . 0 8 hm5C_associated_SNPs_39017 0 0 0 0 1 Endoplasmic reticulum 1 0.501333186202827 1 0.997333627594345 hm5C_site_38395 DeepMRMD:1;iRNA_m5C:0.997333627594345 38396 chr21 30699613 30699613 1 + G C THYM 30699616 + 30699596 30699636 41 TTTCAGAACCCCAGCAAGAACCTTGCCCATATGCTTGTGTC TTTCAGAACCCCAGCAACAACCTTGCCCATATGCTTGTGTC < 41bp 1 0.0804097154434393 1 0.116257935762405 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BACH1 ENSG00000156273 CDS Human protein_coding chr21:30699616 chr21:30699613 nonsynonymous SNV 0.989 2 18 hm5C_associated_SNPs_39018 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38396 DeepMRMD:1;iRNA_m5C:0.999536712157815 38397 chr21 30699613 30699613 1 + G C THYM 30699617 + 30699597 30699637 41 TTCAGAACCCCAGCAAGAACCTTGCCCATATGCTTGTGTCA TTCAGAACCCCAGCAACAACCTTGCCCATATGCTTGTGTCA < 41bp 1 0.190607500149032 1 0.24155005812645 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BACH1 ENSG00000156273 CDS Human protein_coding chr21:30699617 chr21:30699613 nonsynonymous SNV 0.989 2 17 hm5C_associated_SNPs_39019 0 0 1 0 0 Cytosol 1 0.500231643921101 1 0.999536712157798 hm5C_site_38397 DeepMRMD:1;iRNA_m5C:0.999536712157798 38398 chrX 153780352 153780352 1 + G T THYM 153780337 + 153780317 153780357 41 GGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACAGGGCGC GGGAAGCCAGCCATGCTGCACCTGCCTTCAGAACATGGCGC < 41bp 1 0.0746711008133 1 0.11449721455574 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IKBKG ENSG00000073009 CDS Human other chrX:153780337 chrX:153780352 nonsynonymous SNV 0.095 1 36 hm5C_associated_SNPs_39020 0 0 1 0 1 chromatin 1 0.500231642972546 1 0.999536714054909 hm5C_site_38398 DeepMRMD:1;iRNA_m5C:0.999536714054909 38399 chr22 18028350 18028350 1 + G T THYM 18028370 + 18028350 18028390 41 GAGTACCCGAATTCAGCTGCCCATTACCACATCAGTCCAGG TAGTACCCGAATTCAGCTGCCCATTACCACATCAGTCCAGG < 41bp 1 0.0295904938283655 1 0.0325473248958588 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CECR2 ENSG00000099954 CDS Human protein_coding chr22:18028370 chr22:18028350 stopgain 0.212 1 1 hm5C_associated_SNPs_39021 0 0 1 0 0 nucleoplasm 1 0.500231643260436 1 0.999536713479129 hm5C_site_38399 DeepMRMD:1;iRNA_m5C:0.999536713479129 38400 chr3 40503432 40503432 1 + G T THYM 40503435 + 40503415 40503455 41 ATTGATAATTTTCAGAGGAACAGAATAATCAAGAATGAAGT ATTGATAATTTTCAGAGTAACAGAATAATCAAGAATGAAGT < 41bp 1 0.667082228354605 1 0.236316561698914 experiment 0.665835543290791 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40503435 chr3:40503432 stopgain 0.997 4 18 hm5C_associated_SNPs_39022 0 0 1 0 1 Ribosome 1 0.500231617773308 1 0.999536764453383 hm5C_site_38400 DeepMRMD:1;iRNA_m5C:0.999536764453383 Multiple complex diseases 38401 chrX 123195681 123195681 1 + C T UCEC 123195669 + 123195649 123195689 41 GATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAAT GATTGAAATAATGCTTTGTACCATTAGACAAGTGGCTGAAT < 41bp 1 0.0780004816706977 1 0.0404730141162872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123195669 chrX:123195681 nonsynonymous SNV 0.995 2 33 hm5C_associated_SNPs_39023 0 0 1 0 1 Nucleus 1 0.500231643919067 1 0.999536712161866 hm5C_site_38401 DeepMRMD:1;iRNA_m5C:0.999536712161866 38402 chrX 123195681 123195681 1 + C T UCEC 123195670 + 123195650 123195690 41 ATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATG ATTGAAATAATGCTTTGTACCATTAGACAAGTGGCTGAATG < 41bp 1 0.395240801795965 1 0.0757402777671814 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123195670 chrX:123195681 nonsynonymous SNV 0.995 2 32 hm5C_associated_SNPs_39024 0 0 1 0 1 Nucleus 1 0.500227426305003 1 0.999545147389993 hm5C_site_38402 DeepMRMD:1;iRNA_m5C:0.999545147389993 38403 chr20 47605106 47605106 1 + T A UCEC 47605120 + 47605100 47605140 41 GAAGAGTATCTCTCAAGCATCTATGAAGAGATAGAAGGCAA GAAGAGAATCTCTCAAGCATCTATGAAGAGATAGAAGGCAA < 41bp 1 0.27823906198657 1 0.172719895839691 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47605120 chr20:47605106 nonsynonymous SNV 0.967 4 7 hm5C_associated_SNPs_39025 0 0 1 0 1 Cytosol 1 0.500231640406112 1 0.999536719187777 hm5C_site_38403 DeepMRMD:1;iRNA_m5C:0.999536719187777 38404 chr20 60708477 60708477 1 + G A UCEC 60708483 + 60708463 60708503 41 TGGGACCACCCGTCGCAACCCCACTTCCCACAGGGCCGGGA TGGGACCACCCGTCACAACCCCACTTCCCACAGGGCCGGGA < 41bp 1 0.300833040752452 1 0.045563817024231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60708483 chr20:60708477 nonsynonymous SNV 0.971 2 15 hm5C_associated_SNPs_39026 0 0 1 0 1 Ribosome 1 0.500231643920828 1 0.999536712158344 hm5C_site_38404 DeepMRMD:1;iRNA_m5C:0.999536712158344 38405 chr20 49458396 49458396 1 + C T UCEC 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGTGGAG < 41bp 1 0.263471791682881 1 0.0562769174575806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458396 nonsynonymous SNV 0.097 1 37 hm5C_associated_SNPs_39027 0 0 1 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38405 DeepMRMD:1;iRNA_m5C:0.999536712157815 38406 chr5 140481755 140481755 1 + G A UCEC 140481767 + 140481747 140481787 41 CCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCG CCATCAACACGGACAACGGCCACCTGTTTGCCCTCAGGTCG < 41bp 1 0.585261355278069 1 0.203091591596603 experiment 0.829477289443861 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140481767 chr5:140481755 nonsynonymous SNV 0.044 0 9 hm5C_associated_SNPs_39028 0 0 0 0 0 exosome 1 0.500231643906556 1 0.999536712186889 hm5C_site_38406 DeepMRMD:1;iRNA_m5C:0.999536712186889 38407 chr1 225284938 225284938 1 + G A UCEC 225284922 + 225284902 225284942 41 TTTATCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAGG TTTATCTTGAACCAGTCTTTCATTCTTCAGAAATACAAAGG < 41bp 1 0.0203856818575648 1 0.0632159113883972 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAH14 ENSG00000185842 CDS Human protein_coding chr1:225284922 chr1:225284938 nonsynonymous SNV 0.988 0 37 hm5C_associated_SNPs_39029 0 0 0 0 1 Cytosol 1 0.500231641149886 1 0.999536717700229 hm5C_site_38407 DeepMRMD:1;iRNA_m5C:0.999536717700229 38408 chr17 80193906 80193906 1 + G A UCEC 80193913 + 80193893 80193933 41 GGCCGTGGTGGACGAGGGCCCCACAGGCGTCAAGGCCCCTG GGCCGTGGTGGACAAGGGCCCCACAGGCGTCAAGGCCCCTG < 41bp 1 0.570850056321234 1 0.0384563207626343 experiment 0.858299887357532 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC16A3 ENSG00000141526 CDS Human protein_coding chr17:80193913 chr17:80193906 nonsynonymous SNV 0.730 0 14 hm5C_associated_SNPs_39030 0 0 1 0 1 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_38408 DeepMRMD:1;iRNA_m5C:0.99953671215782 38409 chr16 30750647 30750647 1 + T C UCEC 30750662 + 30750642 30750682 41 TGGACTTAGCAGATAGCGGGCCAGGCGGGTTGGAATTGACA TGGACCTAGCAGATAGCGGGCCAGGCGGGTTGGAATTGACA < 41bp 1 0.185764362699181 1 0.162755757570267 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30750662 chr16:30750647 synonymous SNV . 0 6 hm5C_associated_SNPs_39031 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38409 DeepMRMD:1;iRNA_m5C:0.999536712157815 38410 chr16 30750647 30750647 1 + T C UCEC 30750663 + 30750643 30750683 41 GGACTTAGCAGATAGCGGGCCAGGCGGGTTGGAATTGACAC GGACCTAGCAGATAGCGGGCCAGGCGGGTTGGAATTGACAC < 41bp 1 0.388531738735857 1 0.429180413484573 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30750663 chr16:30750647 synonymous SNV . 0 5 hm5C_associated_SNPs_39032 0 0 1 0 0 Ribosome 1 0.500231643920659 1 0.999536712158681 hm5C_site_38410 DeepMRMD:1;iRNA_m5C:0.999536712158681 38411 chr1 874698 874698 1 + G T UCEC 874684 + 874664 874704 41 TGCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGAC TGCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCTGAGGAC < 41bp 1 0.543725781080468 1 0.410477101802826 experiment 0.912548437839065 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874684 chr1:874698 synonymous SNV . 0 35 hm5C_associated_SNPs_39033 0 0 0 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38411 DeepMRMD:1;iRNA_m5C:0.999536712157815 38412 chr1 874698 874698 1 + G T UCEC 874685 + 874665 874705 41 GCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACC GCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCTGAGGACC < 41bp 1 0.581263677105906 1 0.582204818725586 experiment 0.837472645788188 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874685 chr1:874698 synonymous SNV . 0 34 hm5C_associated_SNPs_39034 0 0 0 0 2 nucleus 1 0.500231643922981 0.835590362548828 0.999536712154039 hm5C_site_38412 DeepMRMD:0.835590362548828;iRNA_m5C:0.999536712154039 38413 chr1 874698 874698 1 + G T UCEC 874694 + 874674 874714 41 GGAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCC GGAGCTGGGGCCCAGCATGGCCCCTGAGGACCATTACCGCC < 41bp 1 0.471458775638093 1 0.0855833888053894 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874694 chr1:874698 synonymous SNV . 0 25 hm5C_associated_SNPs_39035 0 0 0 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38413 DeepMRMD:1;iRNA_m5C:0.999536712157815 38414 chr1 874698 874698 1 + G T UCEC 874695 + 874675 874715 41 GAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCCG GAGCTGGGGCCCAGCATGGCCCCTGAGGACCATTACCGCCG < 41bp 1 0.460312681087045 1 0.139706045389175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874695 chr1:874698 synonymous SNV . 0 24 hm5C_associated_SNPs_39036 0 0 0 0 2 nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_38414 DeepMRMD:1;iRNA_m5C:0.999536712157815 38415 chr1 874698 874698 1 + G T UCEC 874696 + 874676 874716 41 AGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCCGG AGCTGGGGCCCAGCATGGCCCCTGAGGACCATTACCGCCGG < 41bp 1 0.693114459081797 1 0.538280606269836 experiment 0.613771081836406 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SAMD11 ENSG00000187634 CDS Human protein_coding chr1:874696 chr1:874698 synonymous SNV . 0 23 hm5C_associated_SNPs_39037 0 0 0 0 2 nucleus 1 0.500231643921093 0.923438787460328 0.999536712157815 hm5C_site_38415 DeepMRMD:0.923438787460328;iRNA_m5C:0.999536712157815 38416 chr1 55457684 55457684 1 + A G UCEC 55457683 + 55457663 55457703 41 CCACCCAGCTATGAGAGCATCAGCCTTGCTCTTGATGCCGT CCACCCAGCTATGAGAGCATCGGCCTTGCTCTTGATGCCGT < 41bp 1 0.629321299301784 1 0.218246549367905 experiment 0.741357401396431 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55457683 chr1:55457684 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_39038 0 0 0 0 0 Cytosol 1 0.500231643920498 1 0.999536712159003 hm5C_site_38416 DeepMRMD:1;iRNA_m5C:0.999536712159003 38417 chr1 39751388 39751388 1 + T C UCEC 39751378 + 39751358 39751398 41 TCAGGCAGCTGCAGGTGGATCTCCAGATCCTGCGGGATGAG TCAGGCAGCTGCAGGTGGATCTCCAGATCCCGCGGGATGAG < 41bp 1 0.520908077245051 1 0.807735025882721 experiment 0.958183845509899 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39751378 chr1:39751388 nonsynonymous SNV 0.996 4 31 hm5C_associated_SNPs_39039 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164392134 0.384529948234558 0.999536712157321 hm5C_site_38417 DeepMRMD:0.384529948234558;iRNA_m5C:0.999536712157321 38418 chr1 156876653 156876653 1 + G A UCEC 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCACAGAGAG < 41bp 1 0.296731330692863 1 0.227297633886337 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876653 nonsynonymous SNV 0.900 1 34 hm5C_associated_SNPs_39040 0 0 0 0 1 cytosol 1 0.500231640221939 1 0.999536719556122 hm5C_site_38418 DeepMRMD:1;iRNA_m5C:0.999536719556122 38419 chr12 22208521 22208521 1 + G A UCEC 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TCTCTGTTGTGAGACGCCATCAGTTTCAATGGAGTGAAATT < 41bp 1 0.327294187872562 1 0.185134381055832 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208521 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_39041 0 0 0 0 1 Ribosome 1 0.500231643925137 1 0.999536712149727 hm5C_site_38419 DeepMRMD:1;iRNA_m5C:0.999536712149727 38420 chr6 33423707 33423707 1 + C T UCEC 33423723 + 33423703 33423743 41 CCTGCACTGCCCCCCAAAATCTTCTACATTAAGCAGGAACC CCTGTACTGCCCCCCAAAATCTTCTACATTAAGCAGGAACC < 41bp 1 0.191839684434437 1 0.476873934268951 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB9 ENSG00000213588 CDS Human protein_coding chr6:33423723 chr6:33423707 nonsynonymous SNV 0.456 0 5 hm5C_associated_SNPs_39042 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38420 DeepMRMD:1;iRNA_m5C:0.999536712157815 38421 chr5 68692327 68692327 1 + G T UCEC 68692324 + 68692304 68692344 41 TCATTGCCAAGGAGGAGGATCAAGTTTTCGACCCTTGCACA TCATTGCCAAGGAGGAGGATCAATTTTTCGACCCTTGCACA < 41bp 1 0.296600104017087 1 0.245425462722778 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD17 ENSG00000152942 CDS Human protein_coding chr5:68692324 chr5:68692327 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_39043 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38421 DeepMRMD:1;iRNA_m5C:0.999536712157815 38422 chr17 41561546 41561546 1 + G A UCEC 41561537 + 41561517 41561557 41 CTGGACAATCACTTGGGGATCAACGACAAGGACCTTGGTGA CTGGACAATCACTTGGGGATCAACGACAAAGACCTTGGTGA < 41bp 1 0.526918174498093 1 0.327905118465424 experiment 0.946163651003814 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41561537 chr17:41561546 synonymous SNV . 0 30 hm5C_associated_SNPs_39044 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38422 DeepMRMD:1;iRNA_m5C:0.999536712157815 38423 chr17 47115724 47115724 1 + G A UCEC 47115716 + 47115696 47115736 41 AAGCAGCAGCAAGTGGACATCCCCCTTCGGCTCCTGGTGCC AAGCAGCAGCAAGTGGACATCCCCCTTCAGCTCCTGGTGCC < 41bp 1 0.237566673446031 1 0.09939244389534 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47115716 chr17:47115724 nonsynonymous SNV 0.966 4 29 hm5C_associated_SNPs_39045 0 0 1 0 1 Ribosome 1 0.500231643859309 1 0.999536712281383 hm5C_site_38423 DeepMRMD:1;iRNA_m5C:0.999536712281383 38424 chr17 47115724 47115724 1 + G A UCEC 47115718 + 47115698 47115738 41 GCAGCAGCAAGTGGACATCCCCCTTCGGCTCCTGGTGCCCA GCAGCAGCAAGTGGACATCCCCCTTCAGCTCCTGGTGCCCA < 41bp 1 0.0698082660997166 1 0.0571526288986206 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47115718 chr17:47115724 nonsynonymous SNV 0.966 4 27 hm5C_associated_SNPs_39046 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38424 DeepMRMD:1;iRNA_m5C:0.999536712157815 38425 chr19 56172440 56172440 1 + C A UCEC 56172435 + 56172415 56172455 41 ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGG ATTCCAGCCACTGCTCTTCTCCCCAACATGACCCCTGACGG < 41bp 1 0.648013928445645 1 0.783722519874573 experiment 0.703972143108709 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172435 chr19:56172440 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_39047 0 0 1 0 1 Ribosome 1 0.500231643921089 0.432554960250854 0.999536712157822 hm5C_site_38425 DeepMRMD:0.432554960250854;iRNA_m5C:0.999536712157822 38426 chr19 56172440 56172440 1 + C A UCEC 56172437 + 56172417 56172457 41 TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTC TCCAGCCACTGCTCTTCTCCCCAACATGACCCCTGACGGTC < 41bp 1 0.137099578609685 1 0.317163020372391 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172437 chr19:56172440 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_39048 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38426 DeepMRMD:1;iRNA_m5C:0.999536712157815 38427 chr19 56172440 56172440 1 + C A UCEC 56172438 + 56172418 56172458 41 CCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTCT CCAGCCACTGCTCTTCTCCCCAACATGACCCCTGACGGTCT < 41bp 1 0.631386766277584 1 0.551837623119354 experiment 0.737226467444831 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172438 chr19:56172440 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_39049 0 0 1 0 1 Ribosome 1 0.500231643921057 0.896324753761292 0.999536712157886 hm5C_site_38427 DeepMRMD:0.896324753761292;iRNA_m5C:0.999536712157886 38428 chr18 12718612 12718612 1 + C T UCEC 12718624 + 12718604 12718644 41 CATATCAGCGTAATGATCTGCAGCTTCGTAGGTATGTTTCT CATATCAGTGTAATGATCTGCAGCTTCGTAGGTATGTTTCT < 41bp 1 0.417567882384709 1 0.406907618045807 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718624 chr18:12718612 nonsynonymous SNV 0.825 1 9 hm5C_associated_SNPs_39052 0 0 1 0 2 Ribosome 1 0.500219558820873 1 0.999560882358254 hm5C_site_38428 DeepMRMD:1;iRNA_m5C:0.999560882358254 38429 chr15 41571579 41571579 1 + C A UCEC 41571595 + 41571575 41571615 41 ATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGCGGTCTA ATTTATTCACTAAAGGAGACCAAACTGTTCCTTGCGGTCTA < 41bp 1 0.217428576150193 1 0.172593802213669 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41571595 chr15:41571579 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_39053 0 0 1 0 1 Ribosome 1 0.500231644281498 1 0.999536711437005 hm5C_site_38429 DeepMRMD:1;iRNA_m5C:0.999536711437005 38430 chr3 49060159 49060159 1 + G A UCEC 49060174 + 49060154 49060194 41 TCACCGAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC TCACCAAAGACAGCTTTTCCCTCTTCTGGTTGCTGGAGCCC < 41bp 1 0.375489224237678 1 0.242324560880661 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49060174 chr3:49060159 nonsynonymous SNV 0.954 3 6 hm5C_associated_SNPs_39054 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38430 DeepMRMD:1;iRNA_m5C:0.999536712157815 38431 chr3 155629025 155629025 1 + G T UCEC 155629040 + 155629020 155629060 41 AGCCAGTCTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA AGCCATTCTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA < 41bp 1 0.106659960626835 1 0.0762109756469727 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155629040 chr3:155629025 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_39055 0 0 1 0 1 Nucleus 1 0.500231651323713 1 0.999536697352575 hm5C_site_38431 DeepMRMD:1;iRNA_m5C:0.999536697352575 38432 chrX 129149434 129149434 1 + G A UCEC 129149429 + 129149409 129149449 41 GCAACCACGGCCTGGGGGCTCCTTCGTTCCAGAGCAGGACC GCAACCACGGCCTGGGGGCTCCTTCATTCCAGAGCAGGACC < 41bp 1 0.0199209989774688 1 0.142282873392105 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129149429 chrX:129149434 nonsynonymous SNV 0.983 0 26 hm5C_associated_SNPs_39056 0 0 1 0 0 Cytosol 1 0.500231638266279 1 0.999536723467442 hm5C_site_38432 DeepMRMD:1;iRNA_m5C:0.999536723467442 38433 chr20 55968380 55968380 1 + G A UCEC 55968361 + 55968341 55968381 41 CCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGG CCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAG < 41bp 1 0.108723116093505 1 0.115832328796387 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968361 chr20:55968380 nonsynonymous SNV 0.989 1 40 hm5C_associated_SNPs_39057 0 0 1 0 2 Ribosome 1 0.500231643922223 1 0.999536712155553 hm5C_site_38433 DeepMRMD:1;iRNA_m5C:0.999536712155553 38434 chr20 55968380 55968380 1 + G A UCEC 55968363 + 55968343 55968383 41 ATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGAC ATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAGAC < 41bp 1 0.358251727900672 1 0.220673620700836 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968363 chr20:55968380 nonsynonymous SNV 0.989 1 38 hm5C_associated_SNPs_39058 0 0 1 0 2 Ribosome 1 0.5002315619285 1 0.999536876143001 hm5C_site_38434 DeepMRMD:1;iRNA_m5C:0.999536876143001 38435 chr20 55968380 55968380 1 + G A UCEC 55968364 + 55968344 55968384 41 TTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACT TTGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAGACT < 41bp 1 0.0169828120419903 1 0.107390582561493 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968364 chr20:55968380 nonsynonymous SNV 0.989 1 37 hm5C_associated_SNPs_39059 0 0 1 0 2 Ribosome 1 0.50023164392283 1 0.999536712154341 hm5C_site_38435 DeepMRMD:1;iRNA_m5C:0.999536712154341 38436 chr20 55968380 55968380 1 + G A UCEC 55968365 + 55968345 55968385 41 TGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTT TGGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAGACTT < 41bp 1 0.0665273863464793 1 0.109325706958771 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968365 chr20:55968380 nonsynonymous SNV 0.989 1 36 hm5C_associated_SNPs_39060 0 0 1 0 2 Ribosome 1 0.500231680935269 1 0.999536638129461 hm5C_site_38436 DeepMRMD:1;iRNA_m5C:0.999536638129461 38437 chr20 55968380 55968380 1 + G A UCEC 55968366 + 55968346 55968386 41 GGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCGGACTTA GGGGTGCAGCAGCTGCACCCCACCTTGATCCAGCAGACTTA < 41bp 1 0.212966875565953 1 0.303290575742722 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55968366 chr20:55968380 nonsynonymous SNV 0.989 1 35 hm5C_associated_SNPs_39061 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38437 DeepMRMD:1;iRNA_m5C:0.999536712157815 38438 chr1 44684021 44684021 1 + G A UCEC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAACTTTATCTCCACGATGAT < 41bp 1 0.430471706192886 1 0.357819378376007 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684021 synonymous SNV . 0 23 hm5C_associated_SNPs_39063 0 0 1 0 2 chromatin 1 0.500231643921068 1 0.999536712157865 hm5C_site_38438 DeepMRMD:1;iRNA_m5C:0.999536712157865 38439 chr17 59485820 59485820 1 + C T UCEC 59485837 + 59485817 59485857 41 GGGCTGGAGAGCCAGCGAGCCCTCTCCCCAGGCCGGGAGTC GGGTTGGAGAGCCAGCGAGCCCTCTCCCCAGGCCGGGAGTC < 41bp 1 0.0904132906084479 1 0.0373586118221283 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBX2 ENSG00000121068 CDS Human protein_coding chr17:59485837 chr17:59485820 synonymous SNV . 0 4 hm5C_associated_SNPs_39064 0 0 1 0 0 Cytosol 1 0.500231605793507 1 0.999536788412987 hm5C_site_38439 DeepMRMD:1;iRNA_m5C:0.999536788412987 38440 chr1 33138423 33138423 1 + C A UCEC 33138407 + 33138387 33138427 41 TTCAGTTTATTCATGGTGGTCATACTGCCAAGATATCTGAT TTCAGTTTATTCATGGTGGTCATACTGCCAAGATATATGAT < 41bp 1 0.0533903259663875 1 0.0851960778236389 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33138407 chr1:33138423 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_39065 0 0 1 0 2 Ribosome 1 0.500231643921159 1 0.999536712157682 hm5C_site_38440 DeepMRMD:1;iRNA_m5C:0.999536712157682 38441 chr10 124813267 124813267 1 + G A UCEC 124813278 + 124813258 124813298 41 AAGCATATCGATGCAGAATACTGACGTCTATAGGAGTGGGA AAGCATATCAATGCAGAATACTGACGTCTATAGGAGTGGGA < 41bp 1 0.327533829746029 1 0.113382041454315 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ACADSB ENSG00000196177 CDS Human protein_coding chr10:124813278 chr10:124813267 nonsynonymous SNV 0.007 1 10 hm5C_associated_SNPs_39066 0 0 1 0 1 Cytosol 1 0.500231643983049 1 0.999536712033902 hm5C_site_38441 DeepMRMD:1;iRNA_m5C:0.999536712033902 38442 chr10 118318695 118318695 1 + C T UCEC 118318713 + 118318693 118318733 41 GGCTGCCCACAGATGGGTCACTATGCTGATAGATATCCTGG GGTTGCCCACAGATGGGTCACTATGCTGATAGATATCCTGG < 41bp 1 0.349483213493057 1 0.0759322345256805 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318713 chr10:118318695 synonymous SNV . 0 3 hm5C_associated_SNPs_39067 0 0 0 0 1 unknown 1 0.50023164392112 1 0.999536712157759 hm5C_site_38442 DeepMRMD:1;iRNA_m5C:0.999536712157759 38443 chr6 80741218 80741218 1 + C T UCEC 80741213 + 80741193 80741233 41 TCTTCTTCAGCAAATGAATGCATTTCGGTTAAAGGAAGAAT TCTTCTTCAGCAAATGAATGCATTTTGGTTAAAGGAAGAAT < 41bp 1 0.0360373123104157 1 0.11958509683609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTK ENSG00000112742 CDS Human protein_coding chr6:80741213 chr6:80741218 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_39068 0 0 1 0 2 chromatin 1 0.500231642015134 1 0.999536715969733 hm5C_site_38443 DeepMRMD:1;iRNA_m5C:0.999536715969733 38444 chr3 9788081 9788081 1 + C T UCEC 9788101 + 9788081 9788121 41 CCCAGGAAGCCCGAGAGCATCTCTACCTCGTCCTCTTCTTT TCCAGGAAGCCCGAGAGCATCTCTACCTCGTCCTCTTCTTT < 41bp 1 0.47773186609957 1 0.409530818462372 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9788101 chr3:9788081 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_39069 0 0 0 0 2 Nucleus 1 0.500231643921144 1 0.999536712157712 hm5C_site_38444 DeepMRMD:1;iRNA_m5C:0.999536712157712 38445 chr16 90030971 90030971 1 + C T UCEC 90030968 + 90030948 90030988 41 GTCTGTGTGCGCCGACTGCTCCGCGGTCTTCCACAGGTGGG GTCTGTGTGCGCCGACTGCTCCGTGGTCTTCCACAGGTGGG < 41bp 1 0.659571650132835 1 0.16153547167778 experiment 0.680856699734329 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90030968 chr16:90030971 nonsynonymous SNV 0.084 4 24 hm5C_associated_SNPs_39070 0 0 0 0 2 Ribosome 1 0.500244676236447 1 0.999510647527107 hm5C_site_38445 DeepMRMD:1;iRNA_m5C:0.999510647527107 38446 chr10 5790715 5790715 1 + A C UCEC 5790732 + 5790712 5790752 41 TTCAGAATCCTTTGATACTTCTGTTTGTGGAATAGCCACAG TTCCGAATCCTTTGATACTTCTGTTTGTGGAATAGCCACAG < 41bp 1 0.360229436760907 1 0.0963650047779083 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM208B ENSG00000108021 CDS Human protein_coding chr10:5790732 chr10:5790715 synonymous SNV . 0 4 hm5C_associated_SNPs_39071 0 0 1 0 0 Nucleus 1 0.500231664018804 1 0.999536671962392 hm5C_site_38446 DeepMRMD:1;iRNA_m5C:0.999536671962392 38447 chrX 152770757 152770757 1 + C T UCEC 152770746 + 152770726 152770766 41 CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCC CTGACACCACGCTGCTGGACCTGCAGAACAATGACATCTCC < 41bp 1 0.693031395752544 1 0.287556350231171 experiment 0.613937208494912 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BGN ENSG00000182492 CDS Human protein_coding chrX:152770746 chrX:152770757 synonymous SNV . 0 32 hm5C_associated_SNPs_39072 0 0 0 0 2 Cytosol 1 0.500231581918716 1 0.999536836162568 hm5C_site_38447 DeepMRMD:1;iRNA_m5C:0.999536836162568 38448 chr3 63965708 63965708 1 + C A UCEC 63965690 + 63965670 63965710 41 CAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTCTT CAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTATT < 41bp 1 0.309391772659696 1 0.634478449821472 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63965690 chr3:63965708 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_39074 0 0 0 0 0 Cytosol 1 0.50023164302763 0.731043100357056 0.99953671394474 hm5C_site_38448 DeepMRMD:0.731043100357056;iRNA_m5C:0.99953671394474 38449 chr6 86176878 86176878 1 + A C UCEC 86176884 + 86176864 86176904 41 AAACATTAAAGCAAAGGGGCCACTAGCATCTCAAATATCAG AAACATTAAAGCAACGGGGCCACTAGCATCTCAAATATCAG < 41bp 1 0.180777754399667 1 0.212854325771332 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NT5E ENSG00000135318 CDS Human protein_coding chr6:86176884 chr6:86176878 nonsynonymous SNV 0.999 1 15 hm5C_associated_SNPs_39075 0 0 0 0 0 nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_38449 DeepMRMD:1;iRNA_m5C:0.999536712157814 38450 chr5 128440932 128440932 1 + A C UCEC 128440946 + 128440926 128440966 41 TACCCTAAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT TACCCTCAAGGTCTTGGGAGCACGGTTCAAGAAATTGATTT < 41bp 1 0.579619499361022 1 0.382976889610291 experiment 0.840761001277956 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440946 chr5:128440932 nonsynonymous SNV 0.993 1 7 hm5C_associated_SNPs_39076 0 0 1 0 1 Ribosome 1 0.50023164392113 1 0.99953671215774 hm5C_site_38450 DeepMRMD:1;iRNA_m5C:0.99953671215774 38451 chrX 152959702 152959702 1 + G A UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG CATCAATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.309439072020366 1 0.0752876996994019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959702 nonsynonymous SNV 0.998 1 5 hm5C_associated_SNPs_39079 0 0 1 4 1 Ribosome 1 0.500231643772443 1 0.999536712455115 hm5C_site_38451 DeepMRMD:1;iRNA_m5C:0.999536712455115 38452 chr9 100774709 100774709 1 + G A UCEC 100774718 + 100774698 100774738 41 TTTAGGAAGAAGAATTTGGACTTGATGAAGAAGATGAAGAT TTTAGGAAGAAAAATTTGGACTTGATGAAGAAGATGAAGAT < 41bp 1 0.474813705419227 1 0.220177352428436 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100774718 chr9:100774709 nonsynonymous SNV 0.995 1 12 hm5C_associated_SNPs_39080 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_38452 DeepMRMD:1;iRNA_m5C:0.999536712157815 38453 chr12 54379654 54379654 1 + C T UCEC 54379670 + 54379650 54379690 41 AAGTCCGACAGCCAGACCCCCAGCCCCAATGAAATCAAGAC AAGTTCGACAGCCAGACCCCCAGCCCCAATGAAATCAAGAC < 41bp 1 0.210830721794253 1 0.446502953767776 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HOXC10 ENSG00000180818;ENSG00000273049 CDS Human other chr12:54379670 chr12:54379654 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_39081 0 0 0 0 0 exosome 1 0.500231643671096 1 0.999536712657808 hm5C_site_38453 DeepMRMD:1;iRNA_m5C:0.999536712657808 38454 chr6 28333362 28333362 1 + A G UCEC 28333342 + 28333322 28333362 41 GAAGCTGGTGAACAGGAGGGCAGGCTACAAAGAAAGCAGAA GAAGCTGGTGAACAGGAGGGCAGGCTACAAAGAAAGCAGAG < 41bp 1 0.529513392830244 1 0.453444302082062 experiment 0.940973214339511 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28333342 chr6:28333362 nonsynonymous SNV 0.693 0 41 hm5C_associated_SNPs_39082 0 0 1 0 0 exosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_38454 DeepMRMD:1;iRNA_m5C:0.999536712157817 38455 chr12 6961425 6961425 1 + G A UCEC 6961445 + 6961425 6961465 41 GACGAGTGCGCCTTCTCCTTCGACACGCCGGTAAGCCCATT AACGAGTGCGCCTTCTCCTTCGACACGCCGGTAAGCCCATT < 41bp 1 0.651582250661102 1 0.747104048728943 experiment 0.696835498677796 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6961445 chr12:6961425 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_39083 0 0 1 0 1 Nucleus 1 0.500231643921092 0.505791902542114 0.999536712157815 hm5C_site_38455 DeepMRMD:0.505791902542114;iRNA_m5C:0.999536712157815 38456 chr8 143783070 143783070 1 + C T UCEC 143783082 + 143783062 143783102 41 AACACTTTCGAGTGCCAGAACCCAAGGAGGTGCAAATGGAC AACACTTTTGAGTGCCAGAACCCAAGGAGGTGCAAATGGAC < 41bp 1 0.39958202899371 1 0.372003257274628 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143783082 chr8:143783070 synonymous SNV . 0 9 hm5C_associated_SNPs_39084 0 0 0 0 2 nucleus 1 0.500231639375179 1 0.999536721249642 hm5C_site_38456 DeepMRMD:1;iRNA_m5C:0.999536721249642 38457 chr16 67914038 67914038 1 + C T UCEC 67914050 + 67914030 67914070 41 AGTGGCAGCCTTCAGGCAAGCCCGCGTGGCCTCCTGCCTGG AGTGGCAGTCTTCAGGCAAGCCCGCGTGGCCTCCTGCCTGG < 41bp 1 0.652719267474742 1 0.254747152328491 experiment 0.694561465050516 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914050 chr16:67914038 synonymous SNV . 0 9 hm5C_associated_SNPs_39085 0 0 1 0 2 Cytosol 1 0.500231633813407 1 0.999536732373187 hm5C_site_38457 DeepMRMD:1;iRNA_m5C:0.999536732373187 38458 chr9 4697161 4697161 1 + G T UCEC 4697148 + 4697128 4697168 41 TTTTTGTCTGACCATCCATACCTTGTATGTGAAGAAACTGC TTTTTGTCTGACCATCCATACCTTGTATGTGAATAAACTGC < 41bp 1 0.051169291709529 1 0.0489274859428406 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4697148 chr9:4697161 stopgain 1.000 1 34 hm5C_associated_SNPs_39087 0 0 1 0 2 Ribosome 1 0.500239134814189 1 0.999521730371622 hm5C_site_38458 DeepMRMD:1;iRNA_m5C:0.999521730371622 38459 chr22 39918074 39918074 1 + G T UCEC 39918059 + 39918039 39918079 41 TTCCCCTTTCCCCAGGGGTCCTGTCCTCCACTCCAGATCAT TTCCCCTTTCCCCAGGGGTCCTGTCCTCCACTCCATATCAT < 41bp 1 0.168197469113518 1 0.0504863262176514 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ATF4 ENSG00000128272 CDS Human protein_coding chr22:39918059 chr22:39918074 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_39088 0 0 1 0 0 Ribosome 1 0.500231643537428 1 0.999536712925144 hm5C_site_38459 DeepMRMD:1;iRNA_m5C:0.999536712925144 38460 chr3 123348380 123348380 1 + G A UCEC 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATCGTCGGAGATCTCATCAAATGCCTCGTCGTCGAAGT < 41bp 1 0.494598363774074 1 0.367176234722137 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348380 synonymous SNV . 0 22 hm5C_associated_SNPs_39089 1 0 0 0 1 Cytosol 1 0.500232664384134 1 0.999534671231733 hm5C_site_38460 DeepMRMD:1;iRNA_m5C:0.999534671231733 not specified not specified 38461 chrX 123229247 123229247 1 + G T UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACGAGAGATAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.586192527567118 1 0.596678912639618 experiment 0.827614944865764 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229247 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_39090 0 0 1 0 2 Nucleus 1 0.500231643923018 0.806642174720764 0.999536712153964 hm5C_site_38461 DeepMRMD:0.806642174720764;iRNA_m5C:0.999536712153964 38462 chr16 50261756 50261756 1 + G A UCEC 50261765 + 50261745 50261785 41 GTTAGGATTCCGATGCAACACCATGCAAAACCCCGAAACAG GTTAGGATTCCAATGCAACACCATGCAAAACCCCGAAACAG < 41bp 1 0.194655960407818 1 0.622231781482697 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50261765 chr16:50261756 nonsynonymous SNV 0.996 4 12 hm5C_associated_SNPs_39091 0 0 1 1 1 Ribosome 1 0.500230311874401 0.755536437034606 0.999539376251197 hm5C_site_38462 DeepMRMD:0.755536437034606;iRNA_m5C:0.999539376251197 38463 chr10 73567715 73567715 1 + C A UCEC 73567716 + 73567696 73567736 41 TTCTGGCCATCCACTACTTCCGGGCCCTTGCCAACGACTCT TTCTGGCCATCCACTACTTACGGGCCCTTGCCAACGACTCT < 41bp 1 0.200164531805856 1 0.759044885635376 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73567716 chr10:73567715 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_39092 0 0 0 0 1 exosome 1 0.500231643921092 0.481910228729248 0.999536712157816 hm5C_site_38463 DeepMRMD:0.481910228729248;iRNA_m5C:0.999536712157816 38464 chr18 34289064 34289064 1 + C T UCEC 34289065 + 34289045 34289085 41 TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCGAATC TTGTCTCCACCAGCAAGTGTCGGGGATCCTGAACCCGAATC < 41bp 1 0.68498402966968 1 0.901327192783356 experiment 0.63003194066064 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289065 chr18:34289064 nonsynonymous SNV 0.047 0 20 hm5C_associated_SNPs_39093 0 0 0 0 1 exosome 1 0.500231643838911 0.197345614433288 0.999536712322179 hm5C_site_38464 DeepMRMD:0.197345614433288;iRNA_m5C:0.999536712322179 38465 chr6 44219852 44219852 1 + G A UCEC 44219833 + 44219813 44219853 41 ACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGA ACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGAA < 41bp 1 0.543008764433057 1 0.0371690988540649 experiment 0.913982471133886 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219833 chr6:44219852 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_39094 0 0 1 0 0 Nucleus 1 0.500231033187661 1 0.999537933624678 hm5C_site_38465 DeepMRMD:1;iRNA_m5C:0.999537933624678 38466 chr6 44219852 44219852 1 + G A UCEC 44219840 + 44219820 44219860 41 CCATTGACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGAT CCATTGACGAGTACTGTGTGCAGCAGCTCAAGAAATTTGAT < 41bp 1 0.638993957143128 1 0.286639332771301 experiment 0.722012085713744 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219840 chr6:44219852 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_39095 0 0 1 0 0 Nucleus 1 0.505608244503496 1 0.988783510993009 hm5C_site_38466 DeepMRMD:1;iRNA_m5C:0.988783510993009 38467 chr6 44219852 44219852 1 + G A UCEC 44219869 + 44219849 44219889 41 AAGGAATTTGATGGGAAGAGCCTGGTCTCAGTTACCAAGGA AAGAAATTTGATGGGAAGAGCCTGGTCTCAGTTACCAAGGA < 41bp 1 0.284918666537094 1 0.275392949581146 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219869 chr6:44219852 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_39097 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_38467 DeepMRMD:1;iRNA_m5C:0.999536712157815 38468 chr9 18504848 18504848 1 + G A UCEC 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCAAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG < 41bp 1 0.358479872607153 1 0.469693332910538 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504848 nonsynonymous SNV 0.934 1 7 hm5C_associated_SNPs_39099 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_38468 DeepMRMD:1;iRNA_m5C:0.999536712157814 38469 chr11 61915976 61915976 1 + C T UCEC 61915991 + 61915971 61916011 41 CCCTGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAG CCCTGTGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAG < 41bp 1 0.260120184871634 1 0.277056813240051 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915991 chr11:61915976 nonsynonymous SNV 0.926 2 6 hm5C_associated_SNPs_39101 0 0 1 0 1 chromatin 1 0.500231643921023 1 0.999536712157954 hm5C_site_38469 DeepMRMD:1;iRNA_m5C:0.999536712157954 38470 chr11 61915976 61915976 1 + C T UCEC 61915994 + 61915974 61916014 41 TGCGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAG TGTGGCTGCAGAAGGAGCAGCTGCAGAGGGAACTGGAGGAG < 41bp 1 0.652723448515205 1 0.783992767333984 experiment 0.69455310296959 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61915994 chr11:61915976 nonsynonymous SNV 0.926 2 3 hm5C_associated_SNPs_39102 0 0 1 0 1 chromatin 1 0.500231781150935 0.432014465332032 0.999536437698131 hm5C_site_38470 DeepMRMD:0.432014465332032;iRNA_m5C:0.999536437698131 38471 chrX 73045211 73045211 1 + C A UCEC 73045203 - 73045183 73045223 41 TGTGGATACAAAGAAAGGAGCAAGCATAAAAAAGTGCTCTT TGTGGATACAAATAAAGGAGCAAGCATAAAAAAGTGCTCTT < 41bp 1 0.144730850979842 1 0.543775260448456 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045203 chrX:73045211 . . 0 13 hm5C_associated_SNPs_39103 0 0 1 0 0 unknown 1 0.500231644448168 0.912449479103088 0.999536711103664 hm5C_site_38471 DeepMRMD:0.912449479103088;iRNA_m5C:0.999536711103664 38472 chrX 73045211 73045211 1 + C A UCEC 73045215 - 73045195 73045235 41 TGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATAA TGTGATAAGCGTTGTGGATACAAATAAAGGAGCAAGCATAA < 41bp 1 0.166715481647827 1 0.393381983041763 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045215 chrX:73045211 . . 0 25 hm5C_associated_SNPs_39104 0 0 1 0 0 unknown 1 0.500230700428634 1 0.999538599142732 hm5C_site_38472 DeepMRMD:1;iRNA_m5C:0.999538599142732 38473 chr9 137987802 137987802 1 + A G UCEC 137987790 + 137987770 137987810 41 TACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTC TACGTGGAGAAGATGGAGAACCAAATGAAAGGGCTGGAGTC < 41bp 1 0.27477309657909 1 0.277300417423248 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987790 chr9:137987802 synonymous SNV . 0 33 hm5C_associated_SNPs_39105 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_38473 DeepMRMD:1;iRNA_m5C:0.999536712157815 38474 chr9 137987802 137987802 1 + A G UCEC 137987791 + 137987771 137987811 41 ACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCC ACGTGGAGAAGATGGAGAACCAAATGAAAGGGCTGGAGTCC < 41bp 1 0.397897610837029 1 0.680876791477203 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137987791 chr9:137987802 synonymous SNV . 0 32 hm5C_associated_SNPs_39106 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643940192 0.638246417045594 0.999536712119616 hm5C_site_38474 DeepMRMD:0.638246417045594;iRNA_m5C:0.999536712119616 38475 chr17 78704404 78704404 1 + G A UCEC 78704396 + 78704376 78704416 41 TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAGC TCCCTCTGTCCATATATGACCTGCAGACATGGATGGGCAGC < 41bp 1 0.431056795949966 1 0.0769566595554352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPTOR ENSG00000141564 CDS Human protein_coding chr17:78704396 chr17:78704404 synonymous SNV . 0 29 hm5C_associated_SNPs_39107 0 0 1 0 1 Nucleus 1 0.500231600220074 1 0.999536799559851 hm5C_site_38475 DeepMRMD:1;iRNA_m5C:0.999536799559851 38476 chr3 37407581 37407581 1 + G A UCEC 37407590 + 37407570 37407610 41 GTCATGGCTCCGATCTTCATCTTGAAGAAGAGTGACATTGG GTCATGGCTCCAATCTTCATCTTGAAGAAGAGTGACATTGG < 41bp 1 0.609305716866305 1 0.567752242088318 experiment 0.781388566267391 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37407590 chr3:37407581 nonsynonymous SNV 0.983 3 12 hm5C_associated_SNPs_39108 0 0 1 0 1 Cytosol 1 0.500231649228985 0.864495515823364 0.999536701542031 hm5C_site_38476 DeepMRMD:0.864495515823364;iRNA_m5C:0.999536701542031 38477 chr1 10221244 10221244 1 + A G UCEC 10221247 + 10221227 10221267 41 AAACATGTTGATAAACGACACGACGTTTTTGCTCGATGAAA AAACATGTTGATAAACGGCACGACGTTTTTGCTCGATGAAA < 41bp 1 0.233769591245126 1 0.0923228561878204 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10221247 chr1:10221244 nonsynonymous SNV 0.924 4 18 hm5C_associated_SNPs_39109 0 0 0 0 1 Cytosol 1 0.500231643919541 1 0.999536712160918 hm5C_site_38477 DeepMRMD:1;iRNA_m5C:0.999536712160918 38478 chr3 184038427 184038427 1 + C T UCEC 184038413 + 184038393 184038433 41 TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCGAGATC TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTTGAGATC < 41bp 1 0.144796623428439 1 0.470406532287598 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184038413 chr3:184038427 stopgain 1.000 1 35 hm5C_associated_SNPs_39110 0 0 1 0 1 Nucleus 1 0.500231643918268 1 0.999536712163464 hm5C_site_38478 DeepMRMD:1;iRNA_m5C:0.999536712163464 38479 chr2 152276723 152276723 1 + A C UCEC 152276742 + 152276722 152276762 41 AATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGG ACTTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGG < 41bp 1 0.34530248300135 1 0.194058030843735 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152276742 chr2:152276723 nonsynonymous SNV 0.944 0 2 hm5C_associated_SNPs_39111 0 0 1 1 1 Nucleus 1 0.500231643921089 1 0.999536712157822 hm5C_site_38479 DeepMRMD:1;iRNA_m5C:0.999536712157822 38480 chr14 96997912 96997912 1 + G T UCEC 96997917 + 96997897 96997937 41 ATATAAGATGTATAAGAAGTCTTAACGGTATGAGAAAGCCT ATATAAGATGTATAATAAGTCTTAACGGTATGAGAAAGCCT < 41bp 1 0.241120318750875 1 0.117374002933502 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96997917 chr14:96997912 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_39112 0 0 1 0 1 Ribosome 1 0.500231657140836 1 0.999536685718329 hm5C_site_38480 DeepMRMD:1;iRNA_m5C:0.999536685718329 38481 chr20 17956512 17956512 1 + T G UCEC 17956504 + 17956484 17956524 41 AAGTGCTGTTCAACATGAAACCTTAAACTATATAGGTCTGC AAGTGCTGTTCAACATGAAACCTTAAACGATATAGGTCTGC < 41bp 1 0.112431116511372 1 0.14197501540184 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MGME1 ENSG00000125871 CDS Human protein_coding chr20:17956504 chr20:17956512 nonsynonymous SNV 0.351 4 29 hm5C_associated_SNPs_39113 0 0 1 0 1 chromatin 1 0.500231670200446 1 0.999536659599108 hm5C_site_38481 DeepMRMD:1;iRNA_m5C:0.999536659599108 38482 chr5 149756155 149756155 1 + G A UCEC 149756135 + 149756115 149756155 41 AAGCAGGAAGACTCTGAGAGCAGTGAGGAGGAATCAGACAG AAGCAGGAAGACTCTGAGAGCAGTGAGGAGGAATCAGACAA < 41bp 1 0.295137142992224 1 0.239847272634506 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149756135 chr5:149756155 nonsynonymous SNV 0.093 0 41 hm5C_associated_SNPs_39114 0 0 1 0 1 Nucleus 1 0.500231681581364 1 0.999536636837272 hm5C_site_38482 DeepMRMD:1;iRNA_m5C:0.999536636837272 38483 chr5 149756155 149756155 1 + G A UCEC 149756153 + 149756133 149756173 41 AGCAGTGAGGAGGAATCAGACAGTGAGGAAGCAGCTGCATC AGCAGTGAGGAGGAATCAGACAATGAGGAAGCAGCTGCATC < 41bp 1 0.287611239230804 1 0.48436039686203 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149756153 chr5:149756155 nonsynonymous SNV 0.093 0 23 hm5C_associated_SNPs_39115 0 0 1 0 1 Nucleus 1 0.500233859432466 1 0.999532281135067 hm5C_site_38483 DeepMRMD:1;iRNA_m5C:0.999532281135067 38484 chr19 4359979 4359979 1 + G A UCEC 4359996 + 4359976 4360016 41 GGCGTCCTCAAGCAGGGGAGCTGAGCCTTCCAGGGCAGGGT GGCATCCTCAAGCAGGGGAGCTGAGCCTTCCAGGGCAGGGT < 41bp 1 0.305003822228229 1 0.370726525783539 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MPND ENSG00000008382 CDS Human protein_coding chr19:4359996 chr19:4359979 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_39116 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38484 DeepMRMD:1;iRNA_m5C:0.999536712157815 38485 chr22 25570261 25570261 1 + C T UCEC 25570257 + 25570237 25570277 41 CACATCGACAAGGAAACAGCCCCCCAGCAGCCGTTTGTCTT CACATCGACAAGGAAACAGCCCCCTAGCAGCCGTTTGTCTT < 41bp 1 0.0610027166978865 1 0.0303841531276703 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KIAA1671 ENSG00000197077 CDS Human protein_coding chr22:25570257 chr22:25570261 synonymous SNV . 0 25 hm5C_associated_SNPs_39117 0 0 0 0 1 Nucleus 1 0.500231641694116 1 0.999536716611768 hm5C_site_38485 DeepMRMD:1;iRNA_m5C:0.999536716611768 38486 chr16 675955 675955 1 + G A UCEC 675974 + 675954 675994 41 AGCGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG AACGGCAGGTCCCGACGGAGCAGGCCCGCGCGTACGCAGAG < 41bp 1 0.532934166769487 1 0.711106538772583 experiment 0.934131666461026 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C;RAB40C ENSG00000197562;ENSG00000197562 exonic;splicing Human other chr16:675974 chr16:675955 synonymous SNV . 0 2 hm5C_associated_SNPs_39118 0 0 1 0 1 unknown 1 0.500231643122117 0.577786922454834 0.999536713755765 hm5C_site_38486 DeepMRMD:0.577786922454834;iRNA_m5C:0.999536713755765 38487 chr8 145535491 145535491 1 + A G UCEC 145535495 + 145535475 145535515 41 GGCTCCTGCCAGCCCCATGGCCTCCCCCGGCGGGAGCATAG GGCTCCTGCCAGCCCCGTGGCCTCCCCCGGCGGGAGCATAG < 41bp 1 0.0293277770083631 1 0.0672605931758881 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535495 chr8:145535491 nonsynonymous SNV 0.026 0 17 hm5C_associated_SNPs_39119 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38487 DeepMRMD:1;iRNA_m5C:0.999536712157815 38488 chr17 65739901 65739901 1 + C T UCEC 65739907 + 65739887 65739927 41 TTGAAGTAAGTTTTCGGGAGCTACAGAAATTAAATCAAGAA TTGAAGTAAGTTTTTGGGAGCTACAGAAATTAAATCAAGAA < 41bp 1 0.431470735580453 1 0.422717303037643 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65739907 chr17:65739901 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_39120 0 0 1 0 1 Nucleus 1 0.500231643921038 1 0.999536712157924 hm5C_site_38488 DeepMRMD:1;iRNA_m5C:0.999536712157924 38489 chr2 32958954 32958954 1 + C A UCEC 32958943 + 32958923 32958963 41 CTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGT CTACATCTGTATTGGAACGCCTGAAGATTTTATATTGCTGT < 41bp 1 0.552216926022257 1 0.521162152290344 experiment 0.895566147955485 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958943 chr2:32958954 nonsynonymous SNV 0.995 1 32 hm5C_associated_SNPs_39121 0 0 1 0 2 Nucleus 1 0.500230528638646 0.957675695419312 0.999538942722709 hm5C_site_38489 DeepMRMD:0.957675695419312;iRNA_m5C:0.999538942722709 Cardiovascular disease risk factors 38490 chr1 32691802 32691802 1 + C T UCEC 32691784 + 32691764 32691804 41 GACTCCAGGAAAGCAGCTGGCCCTTCTCAAGACCAATTCGG GACTCCAGGAAAGCAGCTGGCCCTTCTCAAGACCAATTTGG < 41bp 1 0.129330547984019 1 0.0177480280399323 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3I ENSG00000084623 CDS Human protein_coding chr1:32691784 chr1:32691802 nonsynonymous SNV 0.996 4 39 hm5C_associated_SNPs_39122 0 0 1 0 1 Ribosome 1 0.500231643919057 1 0.999536712161887 hm5C_site_38490 DeepMRMD:1;iRNA_m5C:0.999536712161887 38491 chr7 135329740 135329740 1 + G A UCEC 135329743 + 135329723 135329763 41 GAAGGTGATCAACAATCGAGCTAAACTGCTTTCCCTTTGTT GAAGGTGATCAACAATCAAGCTAAACTGCTTTCCCTTTGTT < 41bp 1 0.287496829106688 1 0.115222960710526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135329743 chr7:135329740 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_39123 0 0 1 0 2 Cytosol 1 0.500231663172224 1 0.999536673655553 hm5C_site_38491 DeepMRMD:1;iRNA_m5C:0.999536673655553 38492 chr3 9870695 9870695 1 + C T UCEC 9870706 + 9870686 9870726 41 GAACTCATGCCATCGGCATCCACTGCTTCCGCCAGACAACA GAACTCATGTCATCGGCATCCACTGCTTCCGCCAGACAACA < 41bp 1 0.263479224983234 1 0.481052219867706 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9870706 chr3:9870695 synonymous SNV . 0 10 hm5C_associated_SNPs_39124 0 0 1 0 1 unknown 1 0.500231646779779 1 0.999536706440441 hm5C_site_38492 DeepMRMD:1;iRNA_m5C:0.999536706440441 38493 chr1 240492733 240492733 1 + C T UCEC 240492713 + 240492693 240492733 41 CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTC CCTGTTCCAGTCCACATTTTCAGAAAGCATTTGCTCAATTT < 41bp 1 0.502186491645285 1 0.769039392471313 experiment 0.99562701670943 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FMN2 ENSG00000155816 CDS Human protein_coding chr1:240492713 chr1:240492733 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_39125 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643925474 0.461921215057374 0.999536712149053 hm5C_site_38493 DeepMRMD:0.461921215057374;iRNA_m5C:0.999536712149053 38494 chr9 135946620 135946620 1 + C T UCEC 135946625 + 135946605 135946645 41 CCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGG CCCCACGGGTGACTCTGAGACCGCCCCCGTGCCGCCCACGG < 41bp 1 0.322386839126807 1 0.236833393573761 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946625 chr9:135946620 synonymous SNV . 0 16 hm5C_associated_SNPs_39126 0 0 0 0 0 exosome 1 0.500231644127502 1 0.999536711744996 hm5C_site_38494 DeepMRMD:1;iRNA_m5C:0.999536711744996 38495 chr9 135946620 135946620 1 + C T UCEC 135946626 + 135946606 135946646 41 CCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGG CCCACGGGTGACTCTGAGACCGCCCCCGTGCCGCCCACGGG < 41bp 1 0.486551195745206 1 0.402224957942963 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946626 chr9:135946620 synonymous SNV . 0 15 hm5C_associated_SNPs_39127 0 0 0 0 0 exosome 1 0.500231416454522 1 0.999537167090957 hm5C_site_38495 DeepMRMD:1;iRNA_m5C:0.999537167090957 38496 chr11 44193272 44193272 1 + T C UCEC 44193285 + 44193265 44193305 41 TGAAGAATGGAATGACCCTCCTGCTGTGGTAAGTGAATTCC TGAAGAACGGAATGACCCTCCTGCTGTGGTAAGTGAATTCC < 41bp 1 0.531941871448385 1 0.359388530254364 experiment 0.936116257103231 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44193285 chr11:44193272 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_39128 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_38496 DeepMRMD:1;iRNA_m5C:0.999536712157815 38497 chr17 21731058 21731058 1 + C A UCEC 21731040 + 21731020 21731060 41 GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATATT < 41bp 1 0.238609013868037 1 0.416224777698517 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731040 chr17:21731058 synonymous SNV . 0 39 hm5C_associated_SNPs_39129 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_38497 DeepMRMD:1;iRNA_m5C:0.999536712157815 38498 chr2 177015070 177015070 1 + C T UCEC 177015059 + 177015039 177015079 41 TGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTG TGTAACGTTGTCTATATATACCCTGTAGAACTGAATTTGTG < 41bp 1 0.333465087972075 1 0.039739727973938 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015059 chr2:177015070 . . 0 32 hm5C_associated_SNPs_39130 0 0 1 0 0 unknown 1 0.500231694018971 1 0.999536611962057 hm5C_site_38498 DeepMRMD:1;iRNA_m5C:0.999536611962057 38499 chr2 177015070 177015070 1 + C T UCEC 177015060 + 177015040 177015080 41 GTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGT GTAACGTTGTCTATATATACCCTGTAGAACTGAATTTGTGT < 41bp 1 0.126583762559 1 0.0449258387088776 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015060 chr2:177015070 . . 0 31 hm5C_associated_SNPs_39131 0 0 1 0 0 unknown 1 0.500387870949158 1 0.999224258101683 hm5C_site_38499 DeepMRMD:1;iRNA_m5C:0.999224258101683 38500 chr1 120286511 120286511 1 + C T UCEC 120286510 + 120286490 120286530 41 GAGTTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGT GAGTTTCTTCTATTTCCAGGCTTCCTGGCAGAGGCAGGCGT < 41bp 1 0.0871436806218148 1 0.215129405260086 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286510 chr1:120286511 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_39132 0 0 1 0 1 Ribosome 1 0.500231643903958 1 0.999536712192085 hm5C_site_38500 DeepMRMD:1;iRNA_m5C:0.999536712192085 38501 chr1 120286511 120286511 1 + C T UCEC 120286513 + 120286493 120286533 41 TTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCG TTTCTTCTATTTCCAGGCTTCCTGGCAGAGGCAGGCGTGCG < 41bp 1 0.186270568831333 1 0.107605159282684 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286513 chr1:120286511 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_39133 0 0 1 0 1 Ribosome 1 0.50023164390428 1 0.99953671219144 hm5C_site_38501 DeepMRMD:1;iRNA_m5C:0.99953671219144 38502 chr1 120286511 120286511 1 + C T UCEC 120286514 + 120286494 120286534 41 TTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCGG TTCTTCTATTTCCAGGCTTCCTGGCAGAGGCAGGCGTGCGG < 41bp 1 0.535569396018314 1 0.137242883443832 experiment 0.928861207963372 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286514 chr1:120286511 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_39134 0 0 1 0 1 Ribosome 1 0.500231643949063 1 0.999536712101874 hm5C_site_38502 DeepMRMD:1;iRNA_m5C:0.999536712101874 38503 chr1 120286511 120286511 1 + C T UCEC 120286518 + 120286498 120286538 41 TCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCGGCTGC TCTATTTCCAGGCTTCCTGGCAGAGGCAGGCGTGCGGCTGC < 41bp 1 0.694087188655133 1 0.887699007987976 experiment 0.611825622689734 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286518 chr1:120286511 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_39135 0 0 1 0 1 Ribosome 1 0.500231643868581 0.224601984024048 0.999536712262839 hm5C_site_38503 DeepMRMD:0.224601984024048;iRNA_m5C:0.999536712262839 38504 chr10 118313334 118313334 1 + C A UCEC 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACAATTGGACGCATCACAGGTT < 41bp 1 0.311406472563789 1 0.10396009683609 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313334 synonymous SNV . 0 22 hm5C_associated_SNPs_39136 0 0 0 0 2 unknown 1 0.500231820216469 1 0.999536359567063 hm5C_site_38504 DeepMRMD:1;iRNA_m5C:0.999536359567063 38505 chr8 28574253 28574253 1 + T C UCEC 28574271 + 28574251 28574291 41 CGTTTATGTTACAGAAAATGCAGACATCGCCTGCCTTTACG CGCTTATGTTACAGAAAATGCAGACATCGCCTGCCTTTACG < 41bp 1 0.180780182257543 1 0.0716910660266876 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28574271 chr8:28574253 nonsynonymous SNV 0.934 1 3 hm5C_associated_SNPs_39137 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643980646 1 0.999536712038707 hm5C_site_38505 DeepMRMD:1;iRNA_m5C:0.999536712038707 38506 chrX 69354375 69354375 1 + G A UCEC 69354374 + 69354354 69354394 41 CTCCTTTTTGCTCTTCCAGCCGAAATGAAGATTTGGAAGAG CTCCTTTTTGCTCTTCCAGCCAAAATGAAGATTTGGAAGAG < 41bp 1 0.500958433116657 1 0.750109672546387 experiment 0.998083133766686 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69354374 chrX:69354375 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_39138 0 0 1 0 1 Cytosol 1 0.500231641071757 0.499780654907226 0.999536717856486 hm5C_site_38506 DeepMRMD:0.499780654907226;iRNA_m5C:0.999536717856486 38507 chr20 43545442 43545442 1 + T G UCEC 43545459 + 43545439 43545479 41 CATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC CATGTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACAC < 41bp 1 0.240012861260771 1 0.022765576839447 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43545459 chr20:43545442 nonsynonymous SNV 0.572 4 4 hm5C_associated_SNPs_39139 0 0 1 0 1 chromatin 1 0.500231806158713 1 0.999536387682574 hm5C_site_38507 DeepMRMD:1;iRNA_m5C:0.999536387682574 38508 chr17 7813831 7813831 1 + C T UCEC 7813827 + 7813807 7813847 41 CACGCTGTCCCGAATACCCCCCATCGCAGCCCGCCTTCAGA CACGCTGTCCCGAATACCCCCCATTGCAGCCCGCCTTCAGA < 41bp 1 0.0415974051512637 1 0.0744256377220154 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7813827 chr17:7813831 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_39140 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_38508 DeepMRMD:1;iRNA_m5C:0.999536712157815 38509 chr17 7813831 7813831 1 + C T UCEC 7813828 + 7813808 7813848 41 ACGCTGTCCCGAATACCCCCCATCGCAGCCCGCCTTCAGAT ACGCTGTCCCGAATACCCCCCATTGCAGCCCGCCTTCAGAT < 41bp 1 0.0746567350049 1 0.108549684286118 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7813828 chr17:7813831 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_39141 0 0 0 0 2 Cytosol 1 0.500231659806387 1 0.999536680387226 hm5C_site_38509 DeepMRMD:1;iRNA_m5C:0.999536680387226 38510 chr1 154306691 154306691 1 + G A UCEC 154306671 + 154306651 154306691 41 AATAAGTTCCCTCTGAGCAACCAGAACATGCTGCTGCGGGG AATAAGTTCCCTCTGAGCAACCAGAACATGCTGCTGCGGGA < 41bp 1 0.36317265318738 1 0.337302565574646 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154306671 chr1:154306691 nonsynonymous SNV 0.987 5 41 hm5C_associated_SNPs_39142 0 0 1 0 1 chromatin 1 0.500231643395068 1 0.999536713209865 hm5C_site_38510 DeepMRMD:1;iRNA_m5C:0.999536713209865 38511 chr11 108205734 108205734 1 + A G UCEC 108205739 + 108205719 108205759 41 AAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTCGCT AAATCTGGTGACTATGCAGTCATTTAAAGCAGAATTTCGCT < 41bp 1 0.0250604258965392 1 0.0852408409118652 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108205739 chr11:108205734 nonsynonymous SNV 0.947 3 16 hm5C_associated_SNPs_39143 0 0 1 0 1 Nucleus 1 0.500231643919841 1 0.999536712160318 hm5C_site_38511 DeepMRMD:1;iRNA_m5C:0.999536712160318 38512 chrX 70779260 70779260 1 + T C UCEC 70779251 + 70779231 70779271 41 CTTATGCAGTCTATTCCAGGCATGCACAATCCTGATAAATT CTTATGCAGTCTATTCCAGGCATGCACAACCCTGATAAATT < 41bp 1 0.0759609715108386 1 0.0736028254032135 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70779251 chrX:70779260 synonymous SNV . 0 30 hm5C_associated_SNPs_39144 0 0 1 0 1 Nucleus 1 0.500231643921796 1 0.999536712156409 hm5C_site_38512 DeepMRMD:1;iRNA_m5C:0.999536712156409 38513 chr1 150483648 150483648 1 + A G UCEC 150483635 + 150483615 150483655 41 TATTCCCGCTGCTGCCACTGCCGCAGCCACACAAACCGCCT TATTCCCGCTGCTGCCACTGCCGCAGCCACACAGACCGCCT < 41bp 1 0.649876492846265 1 0.614895939826965 experiment 0.700247014307471 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ECM1 ENSG00000143369 CDS Human protein_coding chr1:150483635 chr1:150483648 nonsynonymous SNV 0.773 0 34 hm5C_associated_SNPs_39145 0 0 1 0 1 Endoplasmic reticulum 1 0.500231641108507 0.77020812034607 0.999536717782985 hm5C_site_38513 DeepMRMD:0.77020812034607;iRNA_m5C:0.999536717782985 38514 chr7 36464171 36464171 1 + A G UCEC 36464155 + 36464135 36464175 41 TAATGCTTTATTTTTCCAGGCAAGATGTATCCAATGACTTT TAATGCTTTATTTTTCCAGGCAAGATGTATCCAATGGCTTT < 41bp 1 0.402119623335353 1 0.205767095088959 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36464155 chr7:36464171 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_39146 0 0 1 0 2 Nucleus 1 0.500231644331086 1 0.999536711337827 hm5C_site_38514 DeepMRMD:1;iRNA_m5C:0.999536711337827 38515 chr14 103805657 103805657 1 + G A UCEC 103805638 + 103805618 103805658 41 TTAATGAGAAGATTAGAGAACAGATTAAGAAATACAGGCGC TTAATGAGAAGATTAGAGAACAGATTAAGAAATACAGGCAC < 41bp 1 0.438679199029158 1 0.243257015943527 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805638 chr14:103805657 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_39147 0 0 1 0 1 Cytosol 1 0.500231636660952 1 0.999536726678097 hm5C_site_38515 DeepMRMD:1;iRNA_m5C:0.999536726678097 38516 chr14 103805657 103805657 1 + G A UCEC 103805668 + 103805648 103805688 41 AATACAGGCGCCATTTCCTACGAGTAAGCAAAGTGCTCTGG AATACAGGCACCATTTCCTACGAGTAAGCAAAGTGCTCTGG < 41bp 1 0.434442540291888 1 0.449049860239029 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805668 chr14:103805657 nonsynonymous SNV 0.998 1 10 hm5C_associated_SNPs_39148 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38516 DeepMRMD:1;iRNA_m5C:0.999536712157815 38517 chr17 46133897 46133897 1 + C T UCEC 46133913 + 46133893 46133933 41 AGGGCGCGGAAGCTCTGGCACGGAACCTGCTAGTGGATGGA AGGGTGCGGAAGCTCTGGCACGGAACCTGCTAGTGGATGGA < 41bp 1 0.682779616723045 1 0.449921548366547 experiment 0.634440766553909 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46133913 chr17:46133897 synonymous SNV . 0 5 hm5C_associated_SNPs_39149 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38517 DeepMRMD:1;iRNA_m5C:0.999536712157815 38518 chr1 39908223 39908223 1 + A T UCEC 39908204 + 39908184 39908224 41 AGAGACCAATAAGTGGAGACCCAAAAGTCATTGAAGTTGAG AGAGACCAATAAGTGGAGACCCAAAAGTCATTGAAGTTGTG < 41bp 1 0.0573349000850872 1 0.274378389120102 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39908204 chr1:39908223 nonsynonymous SNV 0.984 4 40 hm5C_associated_SNPs_39150 0 0 1 0 1 Endoplasmic reticulum 1 0.5001908661293 1 0.999618267741399 hm5C_site_38518 DeepMRMD:1;iRNA_m5C:0.999618267741399 38519 chr17 16329465 16329465 1 + G A UCEC 16329457 + 16329437 16329477 41 GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCGA GAGTTTTCAGGACTGAGCCACCTTTCCCAAAAGTTCACCGA < 41bp 1 0.00836038181077145 1 0.0541853308677673 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329457 chr17:16329465 nonsynonymous SNV 0.992 5 29 hm5C_associated_SNPs_39151 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643481279 1 0.999536713037442 hm5C_site_38519 DeepMRMD:1;iRNA_m5C:0.999536713037442 38520 chr19 42839481 42839481 1 + G A UCEC 42839497 + 42839477 42839517 41 CCTCGTCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT CCTCATCCTATACAACTTCTCCGCCAACACCTGGGAGTCTT < 41bp 1 0.103749574503505 1 0.354186534881592 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839497 chr19:42839481 nonsynonymous SNV 0.958 0 5 hm5C_associated_SNPs_39152 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921091 1 0.999536712157818 hm5C_site_38520 DeepMRMD:1;iRNA_m5C:0.999536712157818 38521 chr17 18057169 18057169 1 + G T UCEC 18057159 + 18057139 18057179 41 CTGCACCGCCTCATCAATCCCAACTTCTACGGCTATCAGGA CTGCACCGCCTCATCAATCCCAACTTCTACTGCTATCAGGA < 41bp 1 0.118325977544461 1 0.315932035446167 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MYO15A ENSG00000091536 CDS Human protein_coding chr17:18057159 chr17:18057169 nonsynonymous SNV 0.996 3 31 hm5C_associated_SNPs_39153 0 0 0 0 1 chromatin 1 0.500231643922983 1 0.999536712154033 hm5C_site_38521 DeepMRMD:1;iRNA_m5C:0.999536712154033 38522 chr7 155534650 155534650 1 + G A UCEC 155534638 + 155534618 155534658 41 ATAGAAATGAGCAGCAGCCGCTGCTCTGCCACGCCCTCAGC ATAGAAATGAGCAGCAGCCGCTGCTCTGCCACACCCTCAGC < 41bp 1 0.41979763041892 1 0.12722572684288 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM33 ENSG00000184863 CDS Human protein_coding chr7:155534638 chr7:155534650 synonymous SNV . 0 33 hm5C_associated_SNPs_39154 0 0 1 0 0 Nucleus 1 0.500231653577403 1 0.999536692845194 hm5C_site_38522 DeepMRMD:1;iRNA_m5C:0.999536692845194 38523 chr17 60768382 60768382 1 + G A UCEC 60768363 + 60768343 60768383 41 TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGC TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAAC < 41bp 1 0.0340502541825043 1 0.248682647943497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768363 chr17:60768382 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_39155 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38523 DeepMRMD:1;iRNA_m5C:0.999536712157815 38524 chr17 60768382 60768382 1 + G A UCEC 60768364 + 60768344 60768384 41 GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCA GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAACA < 41bp 1 0.11703079977501 1 0.548455834388733 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768364 chr17:60768382 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_39156 0 0 1 0 1 Cytosol 1 0.500231643921095 0.903088331222534 0.99953671215781 hm5C_site_38524 DeepMRMD:0.903088331222534;iRNA_m5C:0.99953671215781 38525 chr17 60768382 60768382 1 + G A UCEC 60768365 + 60768345 60768385 41 AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCAT AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAACAT < 41bp 1 0.244329358681904 1 0.748599886894226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768365 chr17:60768382 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_39157 0 0 1 0 1 Cytosol 1 0.500231643921089 0.502800226211548 0.999536712157822 hm5C_site_38525 DeepMRMD:0.502800226211548;iRNA_m5C:0.999536712157822 38526 chr17 60768382 60768382 1 + G A UCEC 60768377 + 60768357 60768397 41 TGGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAA TGGGGGCCCCCGGGCTTGGGCCCCAACATGCTGAGCCACAA < 41bp 1 0.335400513864774 1 0.314747601747513 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768377 chr17:60768382 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_39158 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38526 DeepMRMD:1;iRNA_m5C:0.999536712157815 38527 chr17 60768382 60768382 1 + G A UCEC 60768378 + 60768358 60768398 41 GGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAAC GGGGGCCCCCGGGCTTGGGCCCCAACATGCTGAGCCACAAC < 41bp 1 0.202293265215681 1 0.370629847049713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768378 chr17:60768382 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_39159 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38527 DeepMRMD:1;iRNA_m5C:0.999536712157815 38528 chr17 60768382 60768382 1 + G A UCEC 60768379 + 60768359 60768399 41 GGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACA GGGGCCCCCGGGCTTGGGCCCCAACATGCTGAGCCACAACA < 41bp 1 0.032497501856234 1 0.155040889978409 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768379 chr17:60768382 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_39160 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38528 DeepMRMD:1;iRNA_m5C:0.999536712157815 38529 chr17 60768382 60768382 1 + G A UCEC 60768380 + 60768360 60768400 41 GGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAG GGGCCCCCGGGCTTGGGCCCCAACATGCTGAGCCACAACAG < 41bp 1 0.501861067867834 1 0.383727848529816 experiment 0.996277864264332 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768380 chr17:60768382 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_39161 0 0 1 0 1 Cytosol 1 0.500231643964736 1 0.999536712070528 hm5C_site_38529 DeepMRMD:1;iRNA_m5C:0.999536712070528 38530 chr16 31473288 31473288 1 + C T UCEC 31473271 + 31473251 31473291 41 CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAATGGC < 41bp 1 0.645747450230737 1 0.467088848352432 experiment 0.708505099538527 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31473271 chr16:31473288 nonsynonymous SNV 0.996 3 38 hm5C_associated_SNPs_39163 0 0 1 0 2 cytosol 1 0.500231388362388 1 0.999537223275224 hm5C_site_38530 DeepMRMD:1;iRNA_m5C:0.999537223275224 38531 chr1 37947348 37947348 1 + G T UCEC 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATCGTGGTTTCCAACTACACATACCGTGACCTCCAAGG < 41bp 1 0.296120127870571 1 0.114681631326675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947348 nonsynonymous SNV 0.988 4 19 hm5C_associated_SNPs_39164 0 0 0 0 1 Nucleus 1 0.500231643920521 1 0.999536712158958 hm5C_site_38531 DeepMRMD:1;iRNA_m5C:0.999536712158958 38532 chr1 37947348 37947348 1 + G T UCEC 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATCGTGGTTTCCAACTACACATACCGTGACCTCCAAGGCG < 41bp 1 0.189957471064676 1 0.0656099021434784 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947348 nonsynonymous SNV 0.988 4 17 hm5C_associated_SNPs_39165 0 0 0 0 1 Nucleus 1 0.500231643916871 1 0.999536712166258 hm5C_site_38532 DeepMRMD:1;iRNA_m5C:0.999536712166258 38533 chrX 131202518 131202518 1 + A G UCEC 131202534 + 131202514 131202554 41 ACACAGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG ACACGGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG < 41bp 1 0.406184714085967 1 0.0385285317897797 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK26 ENSG00000134602 CDS Human protein_coding chrX:131202534 chrX:131202518 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_39166 0 0 1 0 2 Ribosome 1 0.500231643919865 1 0.999536712160271 hm5C_site_38533 DeepMRMD:1;iRNA_m5C:0.999536712160271 38534 chr2 99182154 99182154 1 + G T UCEC 99182143 + 99182123 99182163 41 GAGGACATGAGCCTTGGGATCATGGACTTGAGGAACGTGAC GAGGACATGAGCCTTGGGATCATGGACTTGATGAACGTGAC < 41bp 1 0.448209830075695 1 0.223322868347168 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99182143 chr2:99182154 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_39167 0 0 1 0 2 Ribosome 1 0.500231643921103 1 0.999536712157793 hm5C_site_38534 DeepMRMD:1;iRNA_m5C:0.999536712157793 38535 chrX 55029473 55029473 1 + G A UCEC 55029466 + 55029446 55029486 41 CCATGCGGACCCTGGGAGGCCTGAGCGGCTAGTCTTTAAGA CCATGCGGACCCTGGGAGGCCTGAGCGACTAGTCTTTAAGA < 41bp 1 0.521520553599356 1 0.402795791625977 experiment 0.956958892801288 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APEX2 ENSG00000169188 CDS Human protein_coding chrX:55029466 chrX:55029473 synonymous SNV . 0 28 hm5C_associated_SNPs_39168 0 0 1 0 2 Ribosome 1 0.500231643921169 1 0.999536712157662 hm5C_site_38535 DeepMRMD:1;iRNA_m5C:0.999536712157662 38536 chr19 11145694 11145694 1 + G A UCEC 11145691 + 11145671 11145711 41 TCGTGGATCATCAAGGACGACGCGGAGGTGGAGCGGCTGAC TCGTGGATCATCAAGGACGACGCAGAGGTGGAGCGGCTGAC < 41bp 1 0.480335423559285 1 0.429898858070374 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145691 chr19:11145694 synonymous SNV . 0 24 hm5C_associated_SNPs_39169 1 0 1 0 0 Nucleus 1 0.50023164392095 1 0.9995367121581 hm5C_site_38536 DeepMRMD:1;iRNA_m5C:0.9995367121581 Rhabdoid tumor predisposition syndrome 2 Rhabdoid tumor predisposition syndrome 2 38537 chr19 11145694 11145694 1 + G A UCEC 11145704 + 11145684 11145724 41 AGGACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG AGGACGACGCAGAGGTGGAGCGGCTGACCTGTGAGGAGGAG < 41bp 1 0.441807766425197 1 0.493819922208786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145704 chr19:11145694 synonymous SNV . 0 11 hm5C_associated_SNPs_39170 1 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38537 DeepMRMD:1;iRNA_m5C:0.999536712157815 Rhabdoid tumor predisposition syndrome 2 Rhabdoid tumor predisposition syndrome 2 38538 chr19 11145694 11145694 1 + G A UCEC 11145707 + 11145687 11145727 41 ACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG ACGACGCAGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG < 41bp 1 0.206529144721142 1 0.434219300746918 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145707 chr19:11145694 synonymous SNV . 0 8 hm5C_associated_SNPs_39171 1 0 1 0 0 Nucleus 1 0.500231643823614 1 0.999536712352772 hm5C_site_38538 DeepMRMD:1;iRNA_m5C:0.999536712352772 Rhabdoid tumor predisposition syndrome 2 Rhabdoid tumor predisposition syndrome 2 38539 chr1 171759662 171759662 1 + G T UCEC 171759671 + 171759651 171759691 41 CCTGCAGCCCCGGGGCAGTCCATTGATAAGAGTTACCTGTG CCTGCAGCCCCTGGGCAGTCCATTGATAAGAGTTACCTGTG < 41bp 1 0.242983925033981 1 0.0508601069450378 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759671 chr1:171759662 synonymous SNV . 0 12 hm5C_associated_SNPs_39172 0 0 0 0 2 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_38539 DeepMRMD:1;iRNA_m5C:0.999536712157814 38540 chr12 95681542 95681542 1 + G T UCEC 95681551 + 95681531 95681571 41 AAATTAAAGTTGATTCAGCCCCACGTTCAAGCAAGCAACAA AAATTAAAGTTTATTCAGCCCCACGTTCAAGCAAGCAACAA < 41bp 1 0.400751114119425 1 0.0312183201313019 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95681551 chr12:95681542 nonsynonymous SNV 1.000 0 12 hm5C_associated_SNPs_39175 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164458402 1 0.999536710831959 hm5C_site_38540 DeepMRMD:1;iRNA_m5C:0.999536710831959 38541 chr19 24010421 24010421 1 + C A UCEC 24010418 + 24010398 24010438 41 TGCGCTGTGTAACACAGATTCTCCTCTGCGCTATGTGGACA TGCGCTGTGTAACACAGATTCTCATCTGCGCTATGTGGACA < 41bp 1 0.430915430901413 1 0.0661929249763489 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010418 chr19:24010421 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_39176 0 0 0 0 0 Cytosol 1 0.500231641161966 1 0.999536717676068 hm5C_site_38541 DeepMRMD:1;iRNA_m5C:0.999536717676068 38542 chr19 24010421 24010421 1 + C A UCEC 24010423 + 24010403 24010443 41 TGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCC TGTGTAACACAGATTCTCATCTGCGCTATGTGGACATTGCC < 41bp 1 0.550782272491641 1 0.0848284959793091 experiment 0.898435455016718 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010423 chr19:24010421 nonsynonymous SNV 0.997 3 19 hm5C_associated_SNPs_39177 0 0 0 0 0 Cytosol 1 0.500231680143041 1 0.999536639713918 hm5C_site_38542 DeepMRMD:1;iRNA_m5C:0.999536639713918 38543 chr17 38318315 38318315 1 + G T UCEC 38318298 + 38318278 38318318 41 CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATG CAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATTATG < 41bp 1 0.190741805658307 1 0.0392417311668396 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318298 chr17:38318315 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_39178 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_38543 DeepMRMD:1;iRNA_m5C:0.999536712157815 38544 chr17 38318315 38318315 1 + G T UCEC 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGATGATTATGAAGAT < 41bp 1 0.145385358107427 1 0.093218982219696 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318315 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_39179 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38544 DeepMRMD:1;iRNA_m5C:0.999536712157815 38545 chr4 57180972 57180972 1 + G A UCEC 57180982 + 57180962 57181002 41 GACCAGGAACGCCTGAAACCCGAAGGACAAAGAGAACACTC GACCAGGAACACCTGAAACCCGAAGGACAAAGAGAACACTC < 41bp 1 0.67265847327817 1 0.671461880207062 experiment 0.654683053443659 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180982 chr4:57180972 nonsynonymous SNV 0.000 0 11 hm5C_associated_SNPs_39180 0 0 0 0 0 cytosol 1 0.500231609386285 0.657076239585876 0.999536781227431 hm5C_site_38545 DeepMRMD:0.657076239585876;iRNA_m5C:0.999536781227431 38546 chr11 114273571 114273571 1 + A G UCEC 114273562 + 114273542 114273582 41 CATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGT CATTTTAGGAAGTAGTCATGCCCCACAAGGTGTCAGTTTGT < 41bp 1 0.492437055648564 1 0.0905083119869232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273562 chr11:114273571 nonsynonymous SNV 0.945 1 30 hm5C_associated_SNPs_39181 0 0 1 0 3 Cytosol 1 0.500238760677171 1 0.999522478645659 hm5C_site_38546 DeepMRMD:1;iRNA_m5C:0.999522478645659 38547 chr11 114273571 114273571 1 + A G UCEC 114273563 + 114273543 114273583 41 ATTTTAGGAAGTAGTCATGCCCCACAAGATGTCAGTTTGTC ATTTTAGGAAGTAGTCATGCCCCACAAGGTGTCAGTTTGTC < 41bp 1 0.154790871583342 1 0.152987748384476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273563 chr11:114273571 nonsynonymous SNV 0.945 1 29 hm5C_associated_SNPs_39182 0 0 1 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38547 DeepMRMD:1;iRNA_m5C:0.999536712157815 38548 chr11 114273571 114273571 1 + A G UCEC 114273583 + 114273563 114273603 41 CCCACAAGATGTCAGTTTGTCATATCCCCAACATCATGTTG CCCACAAGGTGTCAGTTTGTCATATCCCCAACATCATGTTG < 41bp 1 0.3789341605572 1 0.164768636226654 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273583 chr11:114273571 nonsynonymous SNV 0.945 1 9 hm5C_associated_SNPs_39183 0 0 1 0 3 Cytosol 1 0.500231710185104 1 0.999536579629793 hm5C_site_38548 DeepMRMD:1;iRNA_m5C:0.999536579629793 38549 chr11 114273571 114273571 1 + A G UCEC 114273589 + 114273569 114273609 41 AGATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT AGGTGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATT < 41bp 1 0.647767165379198 1 0.0878706276416779 experiment 0.704465669241605 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273589 chr11:114273571 nonsynonymous SNV 0.945 1 3 hm5C_associated_SNPs_39184 0 0 1 0 3 Cytosol 1 0.500231643919939 1 0.999536712160121 hm5C_site_38549 DeepMRMD:1;iRNA_m5C:0.999536712160121 38550 chr11 114273571 114273571 1 + A G UCEC 114273590 + 114273570 114273610 41 GATGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC GGTGTCAGTTTGTCATATCCCCAACATCATGTTGGAAATTC < 41bp 1 0.372995230164654 1 0.245010286569595 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114273590 chr11:114273571 nonsynonymous SNV 0.945 1 2 hm5C_associated_SNPs_39185 0 0 1 0 3 Cytosol 1 0.500231644064824 1 0.999536711870351 hm5C_site_38550 DeepMRMD:1;iRNA_m5C:0.999536711870351 38551 chr18 72347528 72347528 1 + A C UCEC 72347515 + 72347495 72347535 41 GACAGCATGAGGAATTGCTGCGGGAGGTGAATAAGTATATA GACAGCATGAGGAATTGCTGCGGGAGGTGAATACGTATATA < 41bp 1 0.578339109893266 1 0.885518312454224 experiment 0.843321780213468 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF407 ENSG00000215421 CDS Human protein_coding chr18:72347515 chr18:72347528 nonsynonymous SNV 0.998 3 34 hm5C_associated_SNPs_39187 0 0 1 0 0 Cytosol 1 0.50023193652457 0.228963375091552 0.99953612695086 hm5C_site_38551 DeepMRMD:0.228963375091552;iRNA_m5C:0.99953612695086 38552 chr12 22208495 22208495 1 + C A UCEC 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TATCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT < 41bp 1 0.310194331635683 1 0.107810348272324 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208495 nonsynonymous SNV 0.996 3 2 hm5C_associated_SNPs_39188 0 0 1 3 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38552 DeepMRMD:1;iRNA_m5C:0.999536712157815 38553 chr14 94512155 94512155 1 + G A UCEC 94512166 + 94512146 94512186 41 TACGTGGACGAGATGGATACCGCCCTGAACCACCACGTGTT TACGTGGACAAGATGGATACCGCCCTGAACCACCACGTGTT < 41bp 1 0.452375397153721 1 0.165274292230606 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUB2 ENSG00000089723 CDS Human protein_coding chr14:94512166 chr14:94512155 nonsynonymous SNV 0.998 1 10 hm5C_associated_SNPs_39189 0 0 0 0 1 exosome 1 0.500231351433544 1 0.999537297132911 hm5C_site_38553 DeepMRMD:1;iRNA_m5C:0.999537297132911 38554 chr15 32920998 32920998 1 + G T UCEC 32920986 + 32920966 32921006 41 CAGAACACCTTCTATTACACCTCAAGAAGAAAGAATTGGTA CAGAACACCTTCTATTACACCTCAAGAAGAAATAATTGGTA < 41bp 1 0.427689556267967 1 0.379138350486755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP11A ENSG00000198826 CDS Human protein_coding chr15:32920986 chr15:32920998 nonsynonymous SNV 0.006 1 33 hm5C_associated_SNPs_39190 2 0 0 0 2 Ribosome 1 0.500231644101426 1 0.999536711797149 hm5C_site_38554 DeepMRMD:1;iRNA_m5C:0.999536711797149 Autism spectrum disorders Autism spectrum disorders 38555 chr1 145663199 145663199 1 + T G UCEC 145663218 + 145663198 145663238 41 TTTAGACCCTTTCTAAGTAGCAGTCCACTGGACCAAGATAA TGTAGACCCTTTCTAAGTAGCAGTCCACTGGACCAAGATAA < 41bp 1 0.0691026780964142 1 0.122960448265076 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663218 chr1:145663199 nonsynonymous SNV . 0 2 hm5C_associated_SNPs_39191 0 0 1 0 1 Nucleus 1 0.50023164404089 1 0.99953671191822 hm5C_site_38555 DeepMRMD:1;iRNA_m5C:0.99953671191822 38556 chrX 41000573 41000573 1 + A C UCEC 41000586 + 41000566 41000606 41 TCAATGGAAAGATGAATGCACTGAATGAAGTTAATAAGGTG TCAATGGCAAGATGAATGCACTGAATGAAGTTAATAAGGTG < 41bp 1 0.243432237412267 1 0.135199576616287 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41000586 chrX:41000573 synonymous SNV . 0 8 hm5C_associated_SNPs_39193 0 0 1 0 1 Nucleus 1 0.500231629295705 1 0.99953674140859 hm5C_site_38556 DeepMRMD:1;iRNA_m5C:0.99953674140859 38557 chr1 222801849 222801849 1 + G A UCEC 222801845 + 222801825 222801865 41 AGATAGCAAACAGGGGAAACCACAGTCAGCAACAGATTATA AGATAGCAAACAGGGGAAACCACAATCAGCAACAGATTATA < 41bp 1 0.691067730007627 1 0.260788679122925 experiment 0.617864539984746 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222801845 chr1:222801849 synonymous SNV . 0 25 hm5C_associated_SNPs_39194 0 0 0 0 0 Endoplasmic reticulum 1 0.500231649437319 1 0.999536701125362 hm5C_site_38557 DeepMRMD:1;iRNA_m5C:0.999536701125362 38558 chr1 44878379 44878379 1 + G A UCEC 44878373 + 44878353 44878393 41 ATCGGGAAGCCTCATCTAGCCCAGAGGATCGGAATGACAGA ATCGGGAAGCCTCATCTAGCCCAGAGAATCGGAATGACAGA < 41bp 1 0.475529390551412 1 0.101916700601578 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878373 chr1:44878379 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_39195 0 0 1 0 1 Ribosome 1 0.50023164394837 1 0.999536712103261 hm5C_site_38558 DeepMRMD:1;iRNA_m5C:0.999536712103261 38559 chr7 87005031 87005031 1 + G A UCEC 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGCGAACTCAATGGGCTAAGGTT < 41bp 1 0.142723260202305 1 0.300912082195282 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005031 nonsynonymous SNV 0.981 1 28 hm5C_associated_SNPs_39197 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38559 DeepMRMD:1;iRNA_m5C:0.999536712157815 38560 chr2 46609717 46609717 1 + C T UCEC 46609709 + 46609689 46609729 41 GCCACCCAGTACCAGGACTACAGCCTGTCGTCAGCCCACAA GCCACCCAGTACCAGGACTACAGCCTGTTGTCAGCCCACAA < 41bp 1 0.363024474142757 1 0.225764483213425 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46609709 chr2:46609717 nonsynonymous SNV 0.053 0 29 hm5C_associated_SNPs_39198 0 0 1 0 1 Cytosol 1 0.500231643921028 1 0.999536712157944 hm5C_site_38560 DeepMRMD:1;iRNA_m5C:0.999536712157944 38561 chr6 7579964 7579964 1 + G T UCEC 7579952 + 7579932 7579972 41 AGATTGAAAGGTTGAGGGTTCTACTGCAGGAAGAAGGCACC AGATTGAAAGGTTGAGGGTTCTACTGCAGGAATAAGGCACC < 41bp 1 0.217265917379509 1 0.267739206552505 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579952 chr6:7579964 stopgain 0.820 0 33 hm5C_associated_SNPs_39199 0 0 1 0 1 Nucleus 1 0.500231643601129 1 0.999536712797741 hm5C_site_38561 DeepMRMD:1;iRNA_m5C:0.999536712797741 38562 chr19 7670113 7670113 1 + G A UCEC 7670120 + 7670100 7670140 41 ATGCCCCCACAGAGCACGTGCCCCCGGAGCTGTGGGAGCCC ATGCCCCCACAGAACACGTGCCCCCGGAGCTGTGGGAGCCC < 41bp 1 0.0491649021621953 1 0.0291037261486053 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7670120 chr19:7670113 synonymous SNV . 0 14 hm5C_associated_SNPs_39200 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38562 DeepMRMD:1;iRNA_m5C:0.999536712157815 38563 chr19 7670113 7670113 1 + G A UCEC 7670124 + 7670104 7670144 41 CCCCACAGAGCACGTGCCCCCGGAGCTGTGGGAGCCCTTCT CCCCACAGAACACGTGCCCCCGGAGCTGTGGGAGCCCTTCT < 41bp 1 0.530312715686332 1 0.839260876178741 experiment 0.939374568627335 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7670124 chr19:7670113 synonymous SNV . 0 10 hm5C_associated_SNPs_39201 0 0 1 0 1 nucleus 1 0.500231643921092 0.321478247642518 0.999536712157815 hm5C_site_38563 DeepMRMD:0.321478247642518;iRNA_m5C:0.999536712157815 38564 chr14 93043717 93043717 1 + C T UCEC 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTTGCCGGGACAGCAGCTCGAAGCAGCTGGT < 41bp 1 0.456814410761482 1 0.465351760387421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043717 nonsynonymous SNV 0.005 1 13 hm5C_associated_SNPs_39202 0 0 0 0 1 cytosol 1 0.500233882221961 1 0.999532235556078 hm5C_site_38564 DeepMRMD:1;iRNA_m5C:0.999532235556078 38565 chr12 65264453 65264453 1 + C T UCEC 65264472 + 65264452 65264492 41 TCGAAGTGAATACCATGCAGCTTTTAACAGTATGATGATGG TTGAAGTGAATACCATGCAGCTTTTAACAGTATGATGATGG < 41bp 1 0.0152657404737874 1 0.0303803384304047 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65264472 chr12:65264453 stopgain 0.124 0 2 hm5C_associated_SNPs_39203 0 0 0 0 1 nucleoplasm 1 0.500231645382148 1 0.999536709235704 hm5C_site_38565 DeepMRMD:1;iRNA_m5C:0.999536709235704 38566 chr12 69218195 69218195 1 + T C UCEC 69218205 + 69218185 69218225 41 ACCTTGAAGGTGGGAGTGATCAAAAGGTAATCTAAGTAAAT ACCTTGAAGGCGGGAGTGATCAAAAGGTAATCTAAGTAAAT < 41bp 1 0.697895330525778 1 0.846690714359283 experiment 0.604209338948444 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MDM2 ENSG00000135679 CDS Human protein_coding chr12:69218205 chr12:69218195 synonymous SNV . 0 11 hm5C_associated_SNPs_39204 0 0 1 0 2 Cytosol 1 0.500231643921052 0.306618571281434 0.999536712157897 hm5C_site_38566 DeepMRMD:0.306618571281434;iRNA_m5C:0.999536712157897 38567 chr1 104115871 104115871 1 + G T UCEC 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATCGAGAACTACAATTATGCTACTCAGGTAAATTTTTTTA < 41bp 1 0.297440629531828 1 0.0643429458141327 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115871 nonsynonymous SNV 0.233 5 17 hm5C_associated_SNPs_39205 0 0 0 0 1 exosome 1 0.500231643740628 1 0.999536712518745 hm5C_site_38567 DeepMRMD:1;iRNA_m5C:0.999536712518745 38568 chrX 118603788 118603788 1 + A C UCEC 118603771 + 118603751 118603791 41 GATACTTCCCCACCCAGGCTCTTAACTTCGCCTTCAAAGAT GATACTTCCCCACCCAGGCTCTTAACTTCGCCTTCAACGAT < 41bp 1 0.383739399855726 1 0.085351824760437 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118603771 chrX:118603788 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_39206 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38568 DeepMRMD:1;iRNA_m5C:0.999536712157815 38569 chr6 116757001 116757001 1 + C A UCEC 116756988 + 116756968 116757008 41 TTAATGCAGGGCATGAACATCCTGATCAAAACTCATTTACT TTAATGCAGGGCATGAACATCCTGATCAAAACTAATTTACT < 41bp 1 0.124905835268732 1 0.147555261850357 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DSE ENSG00000111817 CDS Human protein_coding chr6:116756988 chr6:116757001 stopgain 0.986 1 34 hm5C_associated_SNPs_39207 0 0 1 0 0 nucleolus 1 0.500231643921107 1 0.999536712157786 hm5C_site_38569 DeepMRMD:1;iRNA_m5C:0.999536712157786 Alzheimer's disease 38570 chr22 41924017 41924017 1 + C T UCEC 41924003 + 41923983 41924023 41 ACAAGCTGACCATTCAGGGCCTGAAGGACTTCACCCCTGGC ACAAGCTGACCATTCAGGGCCTGAAGGACTTCACTCCTGGC < 41bp 1 0.524336666761265 1 0.469726771116257 experiment 0.95132666647747 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41924003 chr22:41924017 synonymous SNV . 0 35 hm5C_associated_SNPs_39209 0 0 1 0 1 chromatin 1 0.500231863669539 1 0.999536272660923 hm5C_site_38570 DeepMRMD:1;iRNA_m5C:0.999536272660923 38571 chr2 46985767 46985767 1 + A G UCEC 46985774 + 46985754 46985794 41 AATGTGGACATGAACTCCAACAGATGTTTGTCTGTCAAAGA AATGTGGACATGAGCTCCAACAGATGTTTGTCTGTCAAAGA < 41bp 1 0.48929458154306 1 0.411740213632584 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOCS5 ENSG00000171150 CDS Human protein_coding chr2:46985774 chr2:46985767 nonsynonymous SNV 0.997 0 14 hm5C_associated_SNPs_39210 0 0 1 0 0 Cytosol 1 0.500231634147644 1 0.999536731704711 hm5C_site_38571 DeepMRMD:1;iRNA_m5C:0.999536731704711 38572 chr11 47297579 47297579 1 + G A UCEC 47297563 + 47297543 47297583 41 CTATCGATTGCTGCGCTCCCCAGTACCCGTCTCTGGGCAGA CTATCGATTGCTGCGCTCCCCAGTACCCGTCTCTGGACAGA < 41bp 1 0.485393590945241 1 0.464271068572998 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MADD ENSG00000110514 CDS Human protein_coding chr11:47297563 chr11:47297579 synonymous SNV . 0 37 hm5C_associated_SNPs_39211 0 0 1 0 0 Nucleus 1 0.500231643933291 1 0.999536712133418 hm5C_site_38572 DeepMRMD:1;iRNA_m5C:0.999536712133418 38573 chr16 84884226 84884226 1 + A T UCEC 84884208 + 84884188 84884228 41 CACCAACAAGATCGGTTGTGCTGTGAACACCTGCCGGAAGA CACCAACAAGATCGGTTGTGCTGTGAACACCTGCCGGATGA < 41bp 1 0.313961955858326 1 0.139755219221115 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84884208 chr16:84884226 nonsynonymous SNV 0.680 1 39 hm5C_associated_SNPs_39212 0 0 0 0 2 Nucleus 1 0.500231692372244 1 0.999536615255512 hm5C_site_38573 DeepMRMD:1;iRNA_m5C:0.999536615255512 38574 chr15 74000686 74000686 1 + C A UCEC 74000701 + 74000681 74000721 41 GCAGCCTATGACATTCCCCCCAGAGGCCCTGTGGGTGACCG GCAGCATATGACATTCCCCCCAGAGGCCCTGTGGGTGACCG < 41bp 1 0.454324406056372 1 0.812351942062378 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD276 ENSG00000103855 CDS Human protein_coding chr15:74000701 chr15:74000686 nonsynonymous SNV 0.778 1 6 hm5C_associated_SNPs_39213 0 0 1 3 1 Ribosome 1 0.500232461349882 0.375296115875244 0.999535077300236 hm5C_site_38574 DeepMRMD:0.375296115875244;iRNA_m5C:0.999535077300236 38575 chr12 112940031 112940031 1 + G A UCEC 112940029 + 112940009 112940049 41 GTGGAGATCAGAGCCCTCTCCCGCCTTGTACTCCAACGCCA GTGGAGATCAGAGCCCTCTCCCACCTTGTACTCCAACGCCA < 41bp 1 0.234074275102614 1 0.0664404928684235 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112940029 chr12:112940031 synonymous SNV . 0 23 hm5C_associated_SNPs_39214 1 0 1 0 1 Ribosome 1 0.500231646993468 1 0.999536706013063 hm5C_site_38575 DeepMRMD:1;iRNA_m5C:0.999536706013063 not specified not specified 38576 chr8 26223851 26223851 1 + T C UCEC 26223834 + 26223814 26223854 41 TTGTATTTTTCCCCCAGGTGCATGAATACCTCAGAAGTAAA TTGTATTTTTCCCCCAGGTGCATGAATACCTCAGAAGCAAA < 41bp 1 0.189100842074753 1 0.110095530748367 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223834 chr8:26223851 synonymous SNV . 0 38 hm5C_associated_SNPs_39215 0 0 1 0 2 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_38576 DeepMRMD:1;iRNA_m5C:0.999536712157818 38577 chr8 26223851 26223851 1 + T C UCEC 26223842 + 26223822 26223862 41 TTCCCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTC TTCCCCCAGGTGCATGAATACCTCAGAAGCAAACTCTGTTC < 41bp 1 0.314504726648204 1 0.0363706052303314 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223842 chr8:26223851 synonymous SNV . 0 30 hm5C_associated_SNPs_39216 0 0 1 0 2 Cytosol 1 0.500231741754812 1 0.999536516490376 hm5C_site_38577 DeepMRMD:1;iRNA_m5C:0.999536516490376 38578 chr8 26223851 26223851 1 + T C UCEC 26223843 + 26223823 26223863 41 TCCCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTCA TCCCCCAGGTGCATGAATACCTCAGAAGCAAACTCTGTTCA < 41bp 1 0.531881208280528 1 0.155847996473312 experiment 0.936237583438944 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223843 chr8:26223851 synonymous SNV . 0 29 hm5C_associated_SNPs_39217 0 0 1 0 2 Cytosol 1 0.500231643912631 1 0.999536712174739 hm5C_site_38578 DeepMRMD:1;iRNA_m5C:0.999536712174739 38579 chr8 26223851 26223851 1 + T C UCEC 26223845 + 26223825 26223865 41 CCCCAGGTGCATGAATACCTCAGAAGTAAACTCTGTTCACT CCCCAGGTGCATGAATACCTCAGAAGCAAACTCTGTTCACT < 41bp 1 0.569367234309479 1 0.619218707084656 experiment 0.861265531381042 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223845 chr8:26223851 synonymous SNV . 0 27 hm5C_associated_SNPs_39218 0 0 1 0 2 Cytosol 1 0.500231643920984 0.761562585830688 0.999536712158031 hm5C_site_38579 DeepMRMD:0.761562585830688;iRNA_m5C:0.999536712158031 38580 chr8 26223851 26223851 1 + T C UCEC 26223855 + 26223835 26223875 41 ATGAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAAT ATGAATACCTCAGAAGCAAACTCTGTTCACTGTATGAAAAT < 41bp 1 0.28902620119481 1 0.0995935201644897 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223855 chr8:26223851 synonymous SNV . 0 17 hm5C_associated_SNPs_39219 0 0 1 0 2 Cytosol 1 0.500231409161911 1 0.999537181676178 hm5C_site_38580 DeepMRMD:1;iRNA_m5C:0.999537181676178 38581 chr8 26223851 26223851 1 + T C UCEC 26223857 + 26223837 26223877 41 GAATACCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGA GAATACCTCAGAAGCAAACTCTGTTCACTGTATGAAAATGA < 41bp 1 0.0939297754258888 1 0.111632943153381 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223857 chr8:26223851 synonymous SNV . 0 15 hm5C_associated_SNPs_39220 0 0 1 0 2 Cytosol 1 0.50023116561603 1 0.99953766876794 hm5C_site_38581 DeepMRMD:1;iRNA_m5C:0.99953766876794 38582 chr8 26223851 26223851 1 + T C UCEC 26223862 + 26223842 26223882 41 CCTCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCA CCTCAGAAGCAAACTCTGTTCACTGTATGAAAATGACTGCA < 41bp 1 0.312586889508685 1 0.164365530014038 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223862 chr8:26223851 synonymous SNV . 0 10 hm5C_associated_SNPs_39221 0 0 1 0 2 Cytosol 1 0.500231643922142 1 0.999536712155716 hm5C_site_38582 DeepMRMD:1;iRNA_m5C:0.999536712155716 38583 chr8 26223851 26223851 1 + T C UCEC 26223864 + 26223844 26223884 41 TCAGAAGTAAACTCTGTTCACTGTATGAAAATGACTGCATA TCAGAAGCAAACTCTGTTCACTGTATGAAAATGACTGCATA < 41bp 1 0.484392189768565 1 0.0862955451011658 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223864 chr8:26223851 synonymous SNV . 0 8 hm5C_associated_SNPs_39222 0 0 1 0 2 Cytosol 1 0.500321789669289 1 0.999356420661421 hm5C_site_38583 DeepMRMD:1;iRNA_m5C:0.999356420661421 38584 chr17 7592200 7592200 1 + C T UCEC 7592180 + 7592160 7592200 41 AGGAGCTACGGGAGGGGGACCCAGTTTCTCTCTCCACTCCC AGGAGCTACGGGAGGGGGACCCAGTTTCTCTCTCCACTCCT < 41bp 1 0.349195054130004 1 0.316257357597351 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7592180 chr17:7592200 synonymous SNV . 0 41 hm5C_associated_SNPs_39223 0 0 1 0 0 Ribosome 1 0.50023164392113 1 0.99953671215774 hm5C_site_38584 DeepMRMD:1;iRNA_m5C:0.99953671215774 38585 chr17 37650840 37650840 1 + C T UCEC 37650826 + 37650806 37650846 41 CTAGACAATGAGAAAGAGGGCTTCCCAATCACAGCCATTCG CTAGACAATGAGAAAGAGGGCTTCCCAATCACAGTCATTCG < 41bp 1 0.0538320353687948 1 0.0485202372074127 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK12 ENSG00000167258 CDS Human protein_coding chr17:37650826 chr17:37650840 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_39224 0 0 1 0 1 Nucleus 1 0.500231643925525 1 0.99953671214895 hm5C_site_38585 DeepMRMD:1;iRNA_m5C:0.99953671214895 38586 chr19 11559899 11559899 1 + G A UCEC 11559894 + 11559874 11559914 41 CCCTGTGTCTCTCACAGCACCTGGGGCTCATGGATTGGCCC CCCTGTGTCTCTCACAGCACCTGGGACTCATGGATTGGCCC < 41bp 1 0.681947326154298 1 0.693729639053345 experiment 0.636105347691404 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559894 chr19:11559899 nonsynonymous SNV 0.989 3 26 hm5C_associated_SNPs_39225 0 0 1 0 2 Nucleus 1 0.500231644470437 0.61254072189331 0.999536711059126 hm5C_site_38586 DeepMRMD:0.61254072189331;iRNA_m5C:0.999536711059126 38587 chr12 132335768 132335768 1 + G A UCEC 132335772 + 132335752 132335792 41 TGCTGCTGCTGCTGCCGCCACTGTCACCAGGCGCCCTGTGG TGCTGCTGCTGCTGCCACCACTGTCACCAGGCGCCCTGTGG < 41bp 1 0.188515192543724 1 0.175998419523239 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132335772 chr12:132335768 synonymous SNV . 0 17 hm5C_associated_SNPs_39226 0 0 1 0 0 Cytosol 1 0.500231633963427 1 0.999536732073146 hm5C_site_38587 DeepMRMD:1;iRNA_m5C:0.999536732073146 38588 chr8 97316287 97316287 1 + G T UCEC 97316303 + 97316283 97316323 41 CACCGGGAAGATCAAGAGAGCTGTTCTGCAGTTCACTCCTG CACCTGGAAGATCAAGAGAGCTGTTCTGCAGTTCACTCCTG < 41bp 1 0.229515529435524 1 0.0524026155471802 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97316303 chr8:97316287 nonsynonymous SNV 0.959 4 5 hm5C_associated_SNPs_39227 0 0 1 0 1 Ribosome 1 0.500231664778135 1 0.999536670443731 hm5C_site_38588 DeepMRMD:1;iRNA_m5C:0.999536670443731 38589 chr12 121001391 121001391 1 + G A UCEC 121001403 + 121001383 121001423 41 CTTCACACGCCTCAGCAGCTCTCCTTGTTACTACTTTTACC CTTCACACACCTCAGCAGCTCTCCTTGTTACTACTTTTACC < 41bp 1 0.349195728532568 1 0.191885769367218 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001403 chr12:121001391 nonsynonymous SNV 0.744 1 9 hm5C_associated_SNPs_39228 0 0 1 0 1 Ribosome 1 0.500232458628772 1 0.999535082742457 hm5C_site_38589 DeepMRMD:1;iRNA_m5C:0.999535082742457 38590 chr12 121001391 121001391 1 + G A UCEC 121001406 + 121001386 121001426 41 CACACGCCTCAGCAGCTCTCCTTGTTACTACTTTTACCAAG CACACACCTCAGCAGCTCTCCTTGTTACTACTTTTACCAAG < 41bp 1 0.279598167111929 1 0.181853532791138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001406 chr12:121001391 nonsynonymous SNV 0.744 1 6 hm5C_associated_SNPs_39229 0 0 1 0 1 Ribosome 1 0.500231644065193 1 0.999536711869614 hm5C_site_38590 DeepMRMD:1;iRNA_m5C:0.999536711869614 38591 chr7 101459313 101459313 1 + G A UCEC 101459315 + 101459295 101459335 41 CTCAATATGTCTCAAGATGGCGGCCAATGTGGGATCGATGT CTCAATATGTCTCAAGATAGCGGCCAATGTGGGATCGATGT < 41bp 1 0.145725354795989 1 0.407864540815353 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101459315 chr7:101459313 nonsynonymous SNV 0.823 1 19 hm5C_associated_SNPs_39231 0 0 1 0 1 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38591 DeepMRMD:1;iRNA_m5C:0.999536712157815 38592 chr17 41296930 41296930 1 + C T UCEC 41296945 + 41296925 41296965 41 CACACCGCGGCCAGCAGGCACCTGGCACCCACCTTCCCTGC CACACTGCGGCCAGCAGGCACCTGGCACCCACCTTCCCTGC < 41bp 1 0.395642870815503 1 0.215029329061508 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBR2 ENSG00000198496 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:41296945 chr17:41296930 . . 0 6 hm5C_associated_SNPs_39232 0 0 1 0 0 unknown 1 0.500231643921391 1 0.999536712157217 hm5C_site_38592 DeepMRMD:1;iRNA_m5C:0.999536712157217 38593 chr21 40191467 40191467 1 + C G UCEC 40191451 + 40191431 40191471 41 TCCCAAAGACCACGACTCCCCTGAGAACGGTGCGGACAGCT TCCCAAAGACCACGACTCCCCTGAGAACGGTGCGGAGAGCT < 41bp 1 0.575968093362538 1 0.47706013917923 experiment 0.848063813274925 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191451 chr21:40191467 nonsynonymous SNV 0.786 0 37 hm5C_associated_SNPs_39233 0 0 1 0 1 Ribosome 1 0.500231643921131 1 0.999536712157737 hm5C_site_38593 DeepMRMD:1;iRNA_m5C:0.999536712157737 38594 chr10 135197561 135197561 1 + A C UCEC 135197543 + 135197523 135197563 41 GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAAAAT GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAACAT < 41bp 1 0.176250181115214 1 0.0525492131710052 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197543 chr10:135197561 nonsynonymous SNV 0.997 5 39 hm5C_associated_SNPs_39234 0 0 0 1 2 exosome 1 0.500231643914369 1 0.999536712171263 hm5C_site_38594 DeepMRMD:1;iRNA_m5C:0.999536712171263 38595 chr5 1034383 1034383 1 + G A UCEC 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGACAACCGCCAGGAGTGGACGTTCACGCT < 41bp 1 0.381376425545836 1 0.529421031475067 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034383 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_39235 0 0 0 0 2 exosome 1 0.500231643929737 0.941157937049866 0.999536712140527 hm5C_site_38595 DeepMRMD:0.941157937049866;iRNA_m5C:0.999536712140527 38596 chr3 37340494 37340494 1 + G T UCEC 37340497 + 37340477 37340517 41 TGGATGAAAGACTTCAAGAACTAGAAAAGATAAAGGTAAAA TGGATGAAAGACTTCAATAACTAGAAAAGATAAAGGTAAAA < 41bp 1 0.616867271626919 1 0.598400056362152 experiment 0.766265456746163 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37340497 chr3:37340494 stopgain 0.997 0 18 hm5C_associated_SNPs_39236 0 0 1 0 1 Cytosol 1 0.500231643916941 0.803199887275696 0.999536712166119 hm5C_site_38596 DeepMRMD:0.803199887275696;iRNA_m5C:0.999536712166119 38597 chr12 27908161 27908161 1 + G T UCEC 27908142 + 27908122 27908162 41 AGAATGGGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGT AGAATGGGAAAAAAGTAAGACTGAAGCAGACATGGAAGATT < 41bp 1 0.598787623630984 1 0.454436451196671 experiment 0.802424752738033 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908142 chr12:27908161 nonsynonymous SNV 0.995 1 40 hm5C_associated_SNPs_39238 0 0 1 0 1 Ribosome 1 0.500231643921086 1 0.999536712157828 hm5C_site_38597 DeepMRMD:1;iRNA_m5C:0.999536712157828 38598 chr12 27908161 27908161 1 + G T UCEC 27908148 + 27908128 27908168 41 GGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGTATATAT GGAAAAAAGTAAGACTGAAGCAGACATGGAAGATTATATAT < 41bp 1 0.50018392606878 1 0.835422873497009 experiment 0.99963214786244 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908148 chr12:27908161 nonsynonymous SNV 0.995 1 34 hm5C_associated_SNPs_39239 0 0 1 0 1 Ribosome 1 0.500231643921092 0.329154253005982 0.999536712157815 hm5C_site_38598 DeepMRMD:0.329154253005982;iRNA_m5C:0.999536712157815 38599 chr16 88501724 88501724 1 + C T UCEC 88501733 + 88501713 88501753 41 GCCGGAGGTGGCGCCGAGAGCCCACCGTGGACTCTCCTAGC GCCGGAGGTGGTGCCGAGAGCCCACCGTGGACTCTCCTAGC < 41bp 1 0.0424891208353016 1 0.239808946847916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88501733 chr16:88501724 nonsynonymous SNV 0.000 0 12 hm5C_associated_SNPs_39240 0 0 0 0 0 exosome 1 0.500231643921945 1 0.999536712156111 hm5C_site_38599 DeepMRMD:1;iRNA_m5C:0.999536712156111 38600 chr11 47256905 47256905 1 + G T UCEC 47256916 + 47256896 47256936 41 AGTGGGACTGCCCCCTGGGCCTGATCCCGCACCCTCACCGT AGTGGGACTTCCCCCTGGGCCTGATCCCGCACCCTCACCGT < 41bp 1 0.500056991798344 1 0.0525939464569092 experiment 0.999886016403312 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256916 chr11:47256905 nonsynonymous SNV 0.003 0 10 hm5C_associated_SNPs_39241 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38600 DeepMRMD:1;iRNA_m5C:0.999536712157815 38601 chr1 162745450 162745450 1 + T A UCEC 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TATCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC < 41bp 1 0.247138002888178 1 0.0848844349384308 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745450 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_39242 0 0 0 0 1 nucleolus 1 0.500231632426076 1 0.999536735147847 hm5C_site_38601 DeepMRMD:1;iRNA_m5C:0.999536735147847 38602 chr6 148808762 148808762 1 + G A UCEC 148808768 + 148808748 148808788 41 AGCTCAAGGAATACGAGGCCCAGCACCGGCAGTCGGCTGCC AGCTCAAGGAATACAAGGCCCAGCACCGGCAGTCGGCTGCC < 41bp 1 0.621249543034522 1 0.19612780213356 experiment 0.757500913930956 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148808768 chr6:148808762 nonsynonymous SNV 0.983 2 15 hm5C_associated_SNPs_39243 0 0 0 0 2 Cytosol 1 0.500231643921023 1 0.999536712157955 hm5C_site_38602 DeepMRMD:1;iRNA_m5C:0.999536712157955 38603 chr11 8118834 8118834 1 + G T UCEC 8118815 + 8118795 8118835 41 CCCAACAGCTCCAGAGCAACCAGTGGACGTTGAGGTCCAGG CCCAACAGCTCCAGAGCAACCAGTGGACGTTGAGGTCCATG < 41bp 1 0.611441528240971 1 0.449231088161469 experiment 0.777116943518058 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TUB ENSG00000166402 CDS Human protein_coding chr11:8118815 chr11:8118834 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_39244 0 0 0 0 1 nucleus 1 0.500231643907333 1 0.999536712185334 hm5C_site_38603 DeepMRMD:1;iRNA_m5C:0.999536712185334 38604 chr22 40662814 40662814 1 + C T UCEC 40662825 + 40662805 40662845 41 CTGGAGCAGCGGGCCACAGCCTGCAACACCTAAGGATGAGG CTGGAGCAGTGGGCCACAGCCTGCAACACCTAAGGATGAGG < 41bp 1 0.413463966034571 1 0.807057797908783 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40662825 chr22:40662814 synonymous SNV . 0 10 hm5C_associated_SNPs_39245 0 0 1 0 0 Cytosol 1 0.500232046614833 0.385884404182434 0.999535906770334 hm5C_site_38604 DeepMRMD:0.385884404182434;iRNA_m5C:0.999535906770334 38605 chr19 39114733 39114733 1 + G C UCEC 39114721 + 39114701 39114741 41 TTGTTCTTTTTCTTAGGTACCAGTTCAACCCAGCCTTCTTT TTGTTCTTTTTCTTAGGTACCAGTTCAACCCACCCTTCTTT < 41bp 1 0.218100501500472 1 0.695310473442078 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39114721 chr19:39114733 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_39247 0 0 1 0 1 Cytosol 1 0.500231643031768 0.609379053115844 0.999536713936465 hm5C_site_38605 DeepMRMD:0.609379053115844;iRNA_m5C:0.999536713936465 38606 chr11 123989027 123989027 1 + C T UCEC 123989020 + 123989000 123989040 41 CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATGTGC CCAACCTGGGTCGAAGGCGGCAGTCACTCTGAAGTATGTGC < 41bp 1 0.152944704598959 1 0.254505574703217 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VWA5A ENSG00000110002 CDS Human protein_coding chr11:123989020 chr11:123989027 synonymous SNV . 0 28 hm5C_associated_SNPs_39248 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_38606 DeepMRMD:1;iRNA_m5C:0.999536712157816 38607 chr12 132514403 132514403 1 + C T UCEC 132514398 + 132514378 132514418 41 GCAGCTGCGGCAGACCACGGCTCCACGCCTGCTGCAGTTCC GCAGCTGCGGCAGACCACGGCTCCATGCCTGCTGCAGTTCC < 41bp 1 0.561975536799118 1 0.981580018997192 experiment 0.876048926401765 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132514398 chr12:132514403 nonsynonymous SNV 0.014 1 26 hm5C_associated_SNPs_39249 0 0 1 0 1 Cytosol 1 0.500231643921092 0.0368399620056159 0.999536712157815 hm5C_site_38607 DeepMRMD:0.0368399620056159;iRNA_m5C:0.999536712157815 38608 chr1 227171800 227171800 1 + T C UCEC 227171811 + 227171791 227171831 41 CCAGGGACCTGCTGAAGGGCCACCCCTTCTTCTATGTGCCT CCAGGGACCCGCTGAAGGGCCACCCCTTCTTCTATGTGCCT < 41bp 1 0.196699275979951 1 0.0861896872520447 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171811 chr1:227171800 nonsynonymous SNV 0.939 4 10 hm5C_associated_SNPs_39250 0 0 1 0 1 Nucleus 1 0.50023164392085 1 0.999536712158299 hm5C_site_38608 DeepMRMD:1;iRNA_m5C:0.999536712158299 38609 chr19 46878978 46878978 1 + G A UCEC 46878977 + 46878957 46878997 41 GGCGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT GGCGACGAGCACAAGCGCTCCATGGTGGACTCGCTGGACAT < 41bp 1 0.477915656488408 1 0.472043454647064 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46878977 chr19:46878978 nonsynonymous SNV 0.007 2 22 hm5C_associated_SNPs_39251 0 0 1 0 1 Ribosome 1 0.500231643921378 1 0.999536712157243 hm5C_site_38609 DeepMRMD:1;iRNA_m5C:0.999536712157243 38610 chr15 77241491 77241491 1 + G T UCEC 77241508 + 77241488 77241528 41 CTTGTTTCTCACCAGTGAAGCCACAGATTATGGCAGACAGC CTTTTTTCTCACCAGTGAAGCCACAGATTATGGCAGACAGC < 41bp 1 0.443818896383126 1 0.183861911296844 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RCN2 ENSG00000117906 CDS Human protein_coding chr15:77241508 chr15:77241491 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_39252 0 0 1 0 1 Ribosome 1 0.500236056678578 1 0.999527886642844 hm5C_site_38610 DeepMRMD:1;iRNA_m5C:0.999527886642844 38611 chr10 105172966 105172966 1 + C T UCEC 105172958 + 105172938 105172978 41 CTTCCTACAGCCTGGACGCCCACTCACCCGACTCTCTTGCC CTTCCTACAGCCTGGACGCCCACTCACCTGACTCTCTTGCC < 41bp 1 0.105314079359621 1 0.0664258003234863 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105172958 chr10:105172966 stopgain 0.005 0 29 hm5C_associated_SNPs_39253 0 0 1 0 1 Nucleus 1 0.500231643965682 1 0.999536712068636 hm5C_site_38611 DeepMRMD:1;iRNA_m5C:0.999536712068636 38612 chr14 21544741 21544741 1 + T G UCEC 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCCTCCCCGTGTTCAGCGGCTGCTGATTCTCATTCATGAT < 41bp 1 0.15075957958949 1 0.138008564710617 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544741 nonsynonymous SNV 0.816 0 10 hm5C_associated_SNPs_39254 0 0 1 0 3 Cytosol 1 0.500231643983587 1 0.999536712032827 hm5C_site_38612 DeepMRMD:1;iRNA_m5C:0.999536712032827 38613 chr17 16343398 16343398 1 + A T UCEC 16343379 + 16343359 16343399 41 GAAATCACTAATAGGAAGTGCCGTCAGAAGCGATAACTGAC GAAATCACTAATAGGAAGTGCCGTCAGAAGCGATAACTGTC < 41bp 1 0.0272113204253479 1 0.168402314186096 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD49A ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16343379 chr17:16343398 . . 0 40 hm5C_associated_SNPs_39255 0 0 1 1 0 unknown 1 0.50023164470397 1 0.99953671059206 hm5C_site_38613 DeepMRMD:1;iRNA_m5C:0.99953671059206 38614 chr17 16343398 16343398 1 + A T UCEC 16343415 + 16343395 16343435 41 CTGACGAAGACTACTCCTGTCTGATTGCAGTCAAGTCTTCA CTGTCGAAGACTACTCCTGTCTGATTGCAGTCAAGTCTTCA < 41bp 1 0.229096645959977 1 0.0480892360210419 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD49A ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16343415 chr17:16343398 . . 0 4 hm5C_associated_SNPs_39256 0 0 1 1 0 unknown 1 0.50023475381225 1 0.9995304923755 hm5C_site_38614 DeepMRMD:1;iRNA_m5C:0.9995304923755 38615 chr7 35903184 35903184 1 + G A UCEC 35903183 + 35903163 35903203 41 TGAATCTGGATTGGGAAAGTCGACATTAATCAACTCATTAT TGAATCTGGATTGGGAAAGTCAACATTAATCAACTCATTAT < 41bp 1 0.645388185923411 1 0.24961319565773 experiment 0.709223628153177 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35903183 chr7:35903184 synonymous SNV . 0 22 hm5C_associated_SNPs_39257 0 0 1 0 2 chromatin 1 0.500231643921142 1 0.999536712157716 hm5C_site_38615 DeepMRMD:1;iRNA_m5C:0.999536712157716 38616 chr3 32169669 32169669 1 + G T UCEC 32169667 + 32169647 32169687 41 TTTGAAGAAACAGTGAATGGCAGAAAACTGACAGACATCAT TTTGAAGAAACAGTGAATGGCATAAAACTGACAGACATCAT < 41bp 1 0.333703654024783 1 0.0931618809700012 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPD1L ENSG00000152642 CDS Human protein_coding chr3:32169667 chr3:32169669 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_39258 0 0 1 0 1 Cytosol 1 0.500231539875876 1 0.999536920248248 hm5C_site_38616 DeepMRMD:1;iRNA_m5C:0.999536920248248 38617 chr22 38201932 38201932 1 + G T UCEC 38201937 + 38201917 38201957 41 GGCATCCAAGCCCAAGAAGGCTGCCTCCAAAGCCCCAACCA GGCATCCAAGCCCAATAAGGCTGCCTCCAAAGCCCCAACCA < 41bp 1 0.418557338256604 1 0.321230351924896 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control H1F0 ENSG00000189060 CDS Human protein_coding chr22:38201937 chr22:38201932 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_39259 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_38617 DeepMRMD:1;iRNA_m5C:0.999536712157815 38618 chr20 1905430 1905430 1 + C T UCEC 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGAGAACACTGGATCTAATGAATGGAACATCTATA < 41bp 1 0.141278821890426 1 0.05214723944664 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905430 nonsynonymous SNV 0.001 0 29 hm5C_associated_SNPs_39262 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38618 DeepMRMD:1;iRNA_m5C:0.999536712157815 38619 chr2 24888643 24888643 1 + G T UCEC 24888633 + 24888613 24888653 41 AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA AACAGCACGGAAAAGAGGCGCAGGGAGCAATAAAATAAATA < 41bp 1 0.293476707629863 1 0.575988411903381 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24888633 chr2:24888643 stopgain 1.000 1 31 hm5C_associated_SNPs_39263 0 0 1 0 1 Cytosol 1 0.500231643921092 0.848023176193238 0.999536712157815 hm5C_site_38619 DeepMRMD:0.848023176193238;iRNA_m5C:0.999536712157815 38620 chr19 49993817 49993817 1 + C A UCEC 49993825 + 49993805 49993845 41 CAGCCGCATCTTCTGGCGGACCGTGCGAGGTGAGCAGAGCG CAGCCGCATCTTATGGCGGACCGTGCGAGGTGAGCAGAGCG < 41bp 1 0.146632102573402 1 0.215157747268677 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993825 chr19:49993817 nonsynonymous SNV 0.945 0 13 hm5C_associated_SNPs_39264 0 0 1 0 2 Cytosol 1 0.50023163652802 1 0.999536726943961 hm5C_site_38620 DeepMRMD:1;iRNA_m5C:0.999536726943961 38621 chr13 114541073 114541073 1 + G A UCEC 114541062 - 114541042 114541082 41 CAGCGGCTTCGAGCTCTCCTCTGATGGCAGGACCTGCCAAG CAGCGGCTTTGAGCTCTCCTCTGATGGCAGGACCTGCCAAG < 41bp 1 0.520697988781786 1 0.269302636384964 experiment 0.958604022436429 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541062 chr13:114541073 synonymous SNV . 0 10 hm5C_associated_SNPs_39265 0 0 1 0 2 Endoplasmic reticulum 1 0.500231513573518 1 0.999536972852964 hm5C_site_38621 DeepMRMD:1;iRNA_m5C:0.999536972852964 38622 chr1 117626674 117626674 1 + C A UCEC 117626677 + 117626657 117626697 41 TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA TCCCATGGAACACTAATAATCTGTCCTGCCTCCCTGATCCA < 41bp 1 0.202533107764277 1 0.0795698761940002 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117626677 chr1:117626674 synonymous SNV . 0 18 hm5C_associated_SNPs_39266 0 0 1 0 1 Nucleus 1 0.500231643921095 1 0.99953671215781 hm5C_site_38622 DeepMRMD:1;iRNA_m5C:0.99953671215781 38623 chr2 207175022 207175022 1 + G T UCEC 207175003 + 207174983 207175023 41 GTGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGA GTGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCATA < 41bp 1 0.0416578048681704 1 0.0206244289875031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207175003 chr2:207175022 stopgain 0.101 0 40 hm5C_associated_SNPs_39267 0 0 1 0 0 Nucleus 1 0.500231643705607 1 0.999536712588787 hm5C_site_38623 DeepMRMD:1;iRNA_m5C:0.999536712588787 38624 chr2 207175022 207175022 1 + G T UCEC 207175004 + 207174984 207175024 41 TGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGAG TGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCATAG < 41bp 1 0.28207074235849 1 0.052227109670639 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207175004 chr2:207175022 stopgain 0.101 0 39 hm5C_associated_SNPs_39268 0 0 1 0 0 Nucleus 1 0.500231643921074 1 0.999536712157852 hm5C_site_38624 DeepMRMD:1;iRNA_m5C:0.999536712157852 38625 chr5 140741121 140741121 1 + A G UCEC 140741124 + 140741104 140741144 41 GGCGCCTCTATCGCTCAAATCAGTGCCTCTGACCCTGACTT GGCGCCTCTATCGCTCAGATCAGTGCCTCTGACCCTGACTT < 41bp 1 0.163218817018347 1 0.152127325534821 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741124 chr5:140741121 synonymous SNV . 0 18 hm5C_associated_SNPs_39269 0 0 0 0 0 exosome 1 0.500231643274607 1 0.999536713450786 hm5C_site_38625 DeepMRMD:1;iRNA_m5C:0.999536713450786 38626 chr5 145641095 145641095 1 + A C UCEC 145641091 + 145641071 145641111 41 AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAA AGGTTGCTTTTAAGGGTGACCCAGCAGCAGCCCTAATCCAA < 41bp 1 0.113594659765116 1 0.292497396469116 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641091 chr5:145641095 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_39271 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_38626 DeepMRMD:1;iRNA_m5C:0.999536712157816 38627 chr5 179151766 179151766 1 + G T UCEC 179151781 + 179151761 179151801 41 AGGAGGAAGGAGAAGAGAAACTTGGTAAGAAACAGAGTCCA AGGAGTAAGGAGAAGAGAAACTTGGTAAGAAACAGAGTCCA < 41bp 1 0.694334343536083 1 0.32880049943924 experiment 0.611331312927835 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179151781 chr5:179151766 stopgain 0.736 0 6 hm5C_associated_SNPs_39273 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38627 DeepMRMD:1;iRNA_m5C:0.999536712157815 38628 chr19 40883729 40883729 1 + C T UCEC 40883722 + 40883702 40883742 41 GTGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGC GTGGTCCCCGCGGATGAGGCCCAGGCTTGAATCCCATATGC < 41bp 1 0.454914810842786 1 0.389963030815125 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883722 chr19:40883729 stopgain 0.948 1 28 hm5C_associated_SNPs_39274 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921186 1 0.999536712157627 hm5C_site_38628 DeepMRMD:1;iRNA_m5C:0.999536712157627 38629 chr19 40883729 40883729 1 + C T UCEC 40883723 + 40883703 40883743 41 TGGTCCCCGCGGATGAGGCCCAGGCTCGAATCCCATATGCC TGGTCCCCGCGGATGAGGCCCAGGCTTGAATCCCATATGCC < 41bp 1 0.412404604426341 1 0.530036926269531 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883723 chr19:40883729 stopgain 0.948 1 27 hm5C_associated_SNPs_39275 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.939926147460938 0.999536712157815 hm5C_site_38629 DeepMRMD:0.939926147460938;iRNA_m5C:0.999536712157815 38630 chr9 131847011 131847011 1 + C T UCEC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTTGTGACCCT < 41bp 1 0.506633918966899 1 0.49877342581749 experiment 0.986732162066202 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847011 synonymous SNV . 0 33 hm5C_associated_SNPs_39276 0 0 1 0 2 Ribosome 1 0.500231623151963 1 0.999536753696074 hm5C_site_38630 DeepMRMD:1;iRNA_m5C:0.999536753696074 38631 chr9 71866047 71866047 1 + G A UCEC 71866051 + 71866031 71866071 41 TAATGAAACTCCTGGGGCATCTACCAAAGGTTATCCTCCTC TAATGAAACTCCTGGGACATCTACCAAAGGTTATCCTCCTC < 41bp 1 0.255681433159318 1 0.362232267856598 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71866051 chr9:71866047 nonsynonymous SNV 0.007 0 17 hm5C_associated_SNPs_39277 0 0 0 0 1 Nucleus 1 0.500231643921098 1 0.999536712157804 hm5C_site_38631 DeepMRMD:1;iRNA_m5C:0.999536712157804 38632 chr12 53858594 53858594 1 + G A UCEC 53858583 + 53858563 53858603 41 GCGACAGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGC GCGACAGTGCGAGCTTTCCCCACACCACCCCATCCATGTGC < 41bp 1 0.542784681957131 1 0.3618323802948 experiment 0.914430636085739 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53858583 chr12:53858594 synonymous SNV . 0 32 hm5C_associated_SNPs_39279 0 0 1 0 2 Cytosol 1 0.500231644580966 1 0.999536710838067 hm5C_site_38632 DeepMRMD:1;iRNA_m5C:0.999536710838067 38633 chr12 53858594 53858594 1 + G A UCEC 53858610 + 53858590 53858630 41 CCCCGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCT CCCCATCCATGTGCCTCAACCCTGACCTGGAGGGACCACCT < 41bp 1 0.586887881627115 1 0.117970943450928 experiment 0.826224236745769 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53858610 chr12:53858594 synonymous SNV . 0 5 hm5C_associated_SNPs_39280 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38633 DeepMRMD:1;iRNA_m5C:0.999536712157815 38634 chr1 55457696 55457696 1 + G T UCEC 55457683 + 55457663 55457703 41 CCACCCAGCTATGAGAGCATCAGCCTTGCTCTTGATGCCGT CCACCCAGCTATGAGAGCATCAGCCTTGCTCTTTATGCCGT < 41bp 1 0.566618395134158 1 0.209538519382477 experiment 0.866763209731685 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55457683 chr1:55457696 nonsynonymous SNV 0.000 1 34 hm5C_associated_SNPs_39281 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38634 DeepMRMD:1;iRNA_m5C:0.999536712157815 38635 chr1 55073624 55073624 1 + T C UCEC 55073619 + 55073599 55073639 41 CCCTTCCTTCACTCAGGGACCCCTATGTCATCGCGCTGAGG CCCTTCCTTCACTCAGGGACCCCTACGTCATCGCGCTGAGG < 41bp 1 0.0916854125324058 1 0.0309450328350067 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55073619 chr1:55073624 synonymous SNV . 0 26 hm5C_associated_SNPs_39282 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38635 DeepMRMD:1;iRNA_m5C:0.999536712157815 38636 chr7 100204078 100204078 1 + C T UCEC 100204090 + 100204070 100204110 41 GTCCAGTTCGTCTCAGATCTCAGTGTCACCGCTGATGGCTT GTCCAGTTTGTCTCAGATCTCAGTGTCACCGCTGATGGCTT < 41bp 1 0.486238965542957 1 0.699552714824677 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204090 chr7:100204078 synonymous SNV . 0 9 hm5C_associated_SNPs_39283 0 0 1 0 1 Endoplasmic reticulum 1 0.5002316438902 0.600894570350646 0.999536712219601 hm5C_site_38636 DeepMRMD:0.600894570350646;iRNA_m5C:0.999536712219601 38637 chr12 12940248 12940248 1 + T C UCEC 12940241 + 12940221 12940261 41 CAGGACCAGATGCGAGAGATCCTGAGCTGCCTCGAGTTTTT CAGGACCAGATGCGAGAGATCCTGAGCCGCCTCGAGTTTTT < 41bp 1 0.519690473083277 1 0.203419148921967 experiment 0.960619053833447 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APOLD1 ENSG00000178878 CDS Human protein_coding chr12:12940241 chr12:12940248 nonsynonymous SNV 0.998 3 28 hm5C_associated_SNPs_39284 0 0 0 0 0 Cytosol 1 0.500231698422284 1 0.999536603155431 hm5C_site_38637 DeepMRMD:1;iRNA_m5C:0.999536603155431 38638 chr9 132630326 132630326 1 + G A UCEC 132630317 + 132630297 132630337 41 TCCTTCGCTGCCTGATGGACCAGCTGCACGAGGAGCTCAAG TCCTTCGCTGCCTGATGGACCAGCTGCACAAGGAGCTCAAG < 41bp 1 0.394584972165939 1 0.686662375926971 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132630317 chr9:132630326 nonsynonymous SNV 0.993 4 30 hm5C_associated_SNPs_39285 0 0 1 0 1 chromatin 1 0.500232019351043 0.626675248146058 0.999535961297914 hm5C_site_38638 DeepMRMD:0.626675248146058;iRNA_m5C:0.999535961297914 38639 chr14 100934370 100934370 1 + G A UCEC 100934368 + 100934348 100934388 41 TTGCCTGCAGGTATGGAACGCCGTGGACTCCGGGCACTGCC TTGCCTGCAGGTATGGAACGCCATGGACTCCGGGCACTGCC < 41bp 1 0.133714294541619 1 0.37190979719162 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100934368 chr14:100934370 nonsynonymous SNV 0.245 2 23 hm5C_associated_SNPs_39286 0 0 0 0 1 chromatin 1 0.500231643932776 1 0.999536712134449 hm5C_site_38639 DeepMRMD:1;iRNA_m5C:0.999536712134449 38640 chr15 40509809 40509809 1 + C T UCEC 40509796 + 40509776 40509816 41 GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGT GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTTGGACTGT < 41bp 1 0.342724712563609 1 0.158111393451691 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509796 chr15:40509809 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_39287 0 0 1 0 1 Nucleus 1 0.500231644928685 1 0.99953671014263 hm5C_site_38640 DeepMRMD:1;iRNA_m5C:0.99953671014263 38641 chr15 40509809 40509809 1 + C T UCEC 40509802 + 40509782 40509822 41 CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT CTGGATGTTTTTACCCTCAGCGGCTTTTGGACTGTACAGAT < 41bp 1 0.359859290212882 1 0.541620194911957 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509802 chr15:40509809 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_39288 0 0 1 0 1 Nucleus 1 0.500231643921092 0.916759610176086 0.999536712157815 hm5C_site_38641 DeepMRMD:0.916759610176086;iRNA_m5C:0.999536712157815 38642 chr8 74893415 74893415 1 + G A UCEC 74893419 + 74893399 74893439 41 GTTTCTCTTATTCTACGAGTCTGATTGGCCTTACATTTCTG GTTTCTCTTATTCTACAAGTCTGATTGGCCTTACATTTCTG < 41bp 1 0.33446273187488 1 0.0806026756763458 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TMEM70 ENSG00000175606 CDS Human protein_coding chr8:74893419 chr8:74893415 synonymous SNV . 0 17 hm5C_associated_SNPs_39289 0 0 1 0 1 Ribosome 1 0.500231262602845 1 0.99953747479431 hm5C_site_38642 DeepMRMD:1;iRNA_m5C:0.99953747479431 38643 chr14 104145701 104145701 1 + T A UCEC 104145710 + 104145690 104145730 41 GTCAAACCATTTTCCCCTGCCTGGCTCACAGGGTCTTGACA GTCAAACCATTATCCCCTGCCTGGCTCACAGGGTCTTGACA < 41bp 1 0.157882333223198 1 0.153084605932236 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLC1 ENSG00000126214 CDS Human protein_coding chr14:104145710 chr14:104145701 nonsynonymous SNV 0.014 1 12 hm5C_associated_SNPs_39290 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38643 DeepMRMD:1;iRNA_m5C:0.999536712157815 38644 chr3 38284249 38284249 1 + G T UCEC 38284259 + 38284239 38284279 41 CCGAGTGAAAGAATCAATATCAAATTCTGAGGTAAGTAATT CCGAGTGAAATAATCAATATCAAATTCTGAGGTAAGTAATT < 41bp 1 0.113973914703836 1 0.173069059848785 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38284259 chr3:38284249 stopgain 1.000 1 11 hm5C_associated_SNPs_39291 0 0 1 0 2 Ribosome 1 0.500231643918 1 0.999536712163999 hm5C_site_38644 DeepMRMD:1;iRNA_m5C:0.999536712163999 38645 chrX 54838622 54838622 1 + G T UCEC 54838641 + 54838621 54838661 41 AGAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC ATAATGACCACTTGTACATTCTTCTCAGCACCTTAGAGCCC < 41bp 1 0.130708744261842 1 0.062288761138916 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54838641 chrX:54838622 nonsynonymous SNV 0.993 3 2 hm5C_associated_SNPs_39292 0 0 1 0 2 chromatin 1 0.500242049661483 1 0.999515900677034 hm5C_site_38645 DeepMRMD:1;iRNA_m5C:0.999515900677034 38646 chr1 86048591 86048591 1 + G A UCEC 86048579 + 86048559 86048599 41 TGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGG TGACCAGGACTGTGAAGATGCGGTTCCGCTGCAAAGATGGG < 41bp 1 0.239452706109675 1 0.124694555997849 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048579 chr1:86048591 nonsynonymous SNV 0.993 1 33 hm5C_associated_SNPs_39293 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_38646 DeepMRMD:1;iRNA_m5C:0.999536712157815 38647 chr1 86048591 86048591 1 + G A UCEC 86048584 + 86048564 86048604 41 AGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGAC AGGACTGTGAAGATGCGGTTCCGCTGCAAAGATGGGGAGAC < 41bp 1 0.34045024009003 1 0.112432837486267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048584 chr1:86048591 nonsynonymous SNV 0.993 1 28 hm5C_associated_SNPs_39294 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_38647 DeepMRMD:1;iRNA_m5C:0.999536712157815 38648 chr1 86048591 86048591 1 + G A UCEC 86048585 + 86048565 86048605 41 GGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGACA GGACTGTGAAGATGCGGTTCCGCTGCAAAGATGGGGAGACA < 41bp 1 0.451935287919081 1 0.174147725105286 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048585 chr1:86048591 nonsynonymous SNV 0.993 1 27 hm5C_associated_SNPs_39295 0 0 1 0 0 Endoplasmic reticulum 1 0.50023167146918 1 0.999536657061639 hm5C_site_38648 DeepMRMD:1;iRNA_m5C:0.999536657061639 38649 chr21 47786906 47786906 1 + C A UCEC 47786911 + 47786891 47786931 41 TGTGGAAAAAGGACTCTCTTCACCAAACGATTTTGACTCAA TGTGGAAAAAGGACTATCTTCACCAAACGATTTTGACTCAA < 41bp 1 0.51164729648909 1 0.802573323249817 experiment 0.976705407021819 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47786911 chr21:47786906 nonsynonymous SNV 0.001 2 16 hm5C_associated_SNPs_39297 0 0 1 0 0 Exosome 1 0.500207985932663 0.394853353500366 0.999584028134675 hm5C_site_38649 DeepMRMD:0.394853353500366;iRNA_m5C:0.999584028134675 38650 chrX 135291494 135291494 1 + C T UCEC 135291501 + 135291481 135291521 41 TCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC TCTCACCCTGTTTTCCAGCGCCAACCTCCGGGGCAGGCATC < 41bp 1 0.0758857350211092 1 0.174462080001831 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291501 chrX:135291494 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_39298 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38650 DeepMRMD:1;iRNA_m5C:0.999536712157815 38651 chrX 135291494 135291494 1 + C T UCEC 135291502 + 135291482 135291522 41 CTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC CTCACCCTGTTTTCCAGCGCCAACCTCCGGGGCAGGCATCC < 41bp 1 0.184481272613399 1 0.142223358154297 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291502 chrX:135291494 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_39299 0 0 0 0 1 chromatin 1 0.50023164532538 1 0.99953670934924 hm5C_site_38651 DeepMRMD:1;iRNA_m5C:0.99953670934924 38652 chr19 7598523 7598523 1 + C T UCEC 7598504 + 7598484 7598524 41 GGCAAGTTCCGCCGCGGGAGCGGCTCGGCCTGCAGCCTTCT GGCAAGTTCCGCCGCGGGAGCGGCTCGGCCTGCAGCCTTTT < 41bp 1 0.475069847823447 1 0.0567980110645294 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCOLN1 ENSG00000090674;ENSG00000268614 CDS Human other chr19:7598504 chr19:7598523 nonsynonymous SNV 0.935 1 40 hm5C_associated_SNPs_39300 0 0 0 0 1 chromatin 1 0.500231644187827 1 0.999536711624347 hm5C_site_38652 DeepMRMD:1;iRNA_m5C:0.999536711624347 38653 chr2 46607473 46607473 1 + G T UCEC 46607459 + 46607439 46607479 41 GCCCCATCTGCCCCGAGGAGCGGCTCTTGGCGGAGAACCCA GCCCCATCTGCCCCGAGGAGCGGCTCTTGGCGGATAACCCA < 41bp 1 0.448015113756329 1 0.355664283037186 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607459 chr2:46607473 nonsynonymous SNV 0.097 0 35 hm5C_associated_SNPs_39304 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38653 DeepMRMD:1;iRNA_m5C:0.999536712157815 38654 chr4 123160808 123160808 1 + T G UCEC 123160814 + 123160794 123160834 41 AAGTACTAAGAGTCTTACTGCTGCTTTCTATGGGGACAAGC AAGTACTAAGAGTCGTACTGCTGCTTTCTATGGGGACAAGC < 41bp 1 0.12105196120573 1 0.0729257166385651 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123160814 chr4:123160808 nonsynonymous SNV 0.976 3 15 hm5C_associated_SNPs_39305 0 0 1 0 0 Nucleus 1 0.500231643934081 1 0.999536712131838 hm5C_site_38654 DeepMRMD:1;iRNA_m5C:0.999536712131838 38655 chr1 242030145 242030145 1 + G T UCEC 242030150 + 242030130 242030170 41 AGCCTGCCCATTCAAGAAGTCATAGTTGGGATGACAAAACA AGCCTGCCCATTCAATAAGTCATAGTTGGGATGACAAAACA < 41bp 1 0.241382639312012 1 0.0873810052871704 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXO1 ENSG00000174371 CDS Human protein_coding chr1:242030150 chr1:242030145 nonsynonymous SNV 0.837 4 16 hm5C_associated_SNPs_39306 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_38655 DeepMRMD:1;iRNA_m5C:0.999536712157816 38656 chr1 151006395 151006395 1 + G T UCEC 151006407 + 151006387 151006427 41 TCTCGAAAGAAACTTCTGCCCCTGCTCCAGGAAGCCCTGTC TCTCGAAATAAACTTCTGCCCCTGCTCCAGGAAGCCCTGTC < 41bp 1 0.128841492672565 1 0.0450774133205414 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:151006407 chr1:151006395 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_39307 0 0 1 0 0 chromatin 1 0.500231643921105 1 0.999536712157789 hm5C_site_38656 DeepMRMD:1;iRNA_m5C:0.999536712157789 38657 chr4 87684016 87684016 1 + G T UCEC 87684012 + 87683992 87684032 41 TGGTACCCTGAGGCACATCTCGGAGAACTCCTTTGGGCCAT TGGTACCCTGAGGCACATCTCGGATAACTCCTTTGGGCCAT < 41bp 1 0.582973504738578 1 0.891029000282288 experiment 0.834052990522845 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87684012 chr4:87684016 nonsynonymous SNV 0.961 0 25 hm5C_associated_SNPs_39309 0 0 1 0 0 Ribosome 1 0.500231643921091 0.217941999435424 0.999536712157818 hm5C_site_38657 DeepMRMD:0.217941999435424;iRNA_m5C:0.999536712157818 38658 chr5 134154652 134154652 1 + G T UCEC 134154670 + 134154650 134154690 41 AAGAACCCAAGGAAGGCGAGCGGAAGATTTACTTGGCAATT AATAACCCAAGGAAGGCGAGCGGAAGATTTACTTGGCAATT < 41bp 1 0.661936254514615 1 0.758071184158325 experiment 0.67612749097077 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134154670 chr5:134154652 stopgain 1.000 1 3 hm5C_associated_SNPs_39310 0 0 1 0 1 Cytosol 1 0.500231643921092 0.48385763168335 0.999536712157815 hm5C_site_38658 DeepMRMD:0.48385763168335;iRNA_m5C:0.999536712157815 38659 chr19 49377604 49377604 1 + G T UCEC 49377587 + 49377567 49377607 41 TGAGGACAGTGACTCTGGATCAGATGAGGAAGAGGGAGAAG TGAGGACAGTGACTCTGGATCAGATGAGGAAGAGGGATAAG < 41bp 1 0.472058050677781 1 0.259373813867569 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377587 chr19:49377604 stopgain 0.628 1 38 hm5C_associated_SNPs_39311 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38659 DeepMRMD:1;iRNA_m5C:0.999536712157815 38660 chr7 139094334 139094334 1 + A C UCEC 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGACAAGAA < 41bp 1 0.517163113256059 1 0.208913445472717 experiment 0.965673773487882 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094334 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_39312 0 0 1 0 2 unknown 1 0.50023164429636 1 0.99953671140728 hm5C_site_38660 DeepMRMD:1;iRNA_m5C:0.99953671140728 38661 chr7 139094334 139094334 1 + A C UCEC 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG GAGAAGCAGGAGACAAGAAACCAGGAACGGCTGAAACGAAG < 41bp 1 0.525000644875443 1 0.446681946516037 experiment 0.949998710249113 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094334 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_39313 0 0 1 0 2 unknown 1 0.500232075028614 1 0.999535849942772 hm5C_site_38661 DeepMRMD:1;iRNA_m5C:0.999535849942772 38662 chr7 139094334 139094334 1 + A C UCEC 139094348 + 139094328 139094368 41 AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG AGGAGACAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG < 41bp 1 0.486530027729093 1 0.292359709739685 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094348 chr7:139094334 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_39314 0 0 1 0 2 unknown 1 0.500231643921062 1 0.999536712157876 hm5C_site_38662 DeepMRMD:1;iRNA_m5C:0.999536712157876 38663 chr7 139094334 139094334 1 + A C UCEC 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA AGACAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA < 41bp 1 0.524529168214895 1 0.4171122610569 experiment 0.95094166357021 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094334 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_39315 0 0 1 0 2 unknown 1 0.500231643920022 1 0.999536712159955 hm5C_site_38663 DeepMRMD:1;iRNA_m5C:0.999536712159955 38664 chr19 35741399 35741399 1 + C T UCEC 35741406 + 35741386 35741426 41 CCCCGGCCAGCGTCGACAACCAGCTCAATGCCCAGCTGGCA CCCCGGCCAGCGTTGACAACCAGCTCAATGCCCAGCTGGCA < 41bp 1 0.471233429482234 1 0.559306919574738 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741406 chr19:35741399 synonymous SNV . 0 14 hm5C_associated_SNPs_39316 0 0 1 0 0 chromatin 1 0.500231643921092 0.881386160850524 0.999536712157815 hm5C_site_38664 DeepMRMD:0.881386160850524;iRNA_m5C:0.999536712157815 38665 chr19 45975971 45975971 1 + G T UCEC 45975952 + 45975932 45975972 41 GAAGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGA GAAGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGATA < 41bp 1 0.421003073355086 1 0.161438226699829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975952 chr19:45975971 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_39317 0 0 0 0 0 Cytosol 1 0.500231643935077 1 0.999536712129845 hm5C_site_38665 DeepMRMD:1;iRNA_m5C:0.999536712129845 38666 chr19 45975971 45975971 1 + G T UCEC 45975953 + 45975933 45975973 41 AAGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGAT AAGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGATAT < 41bp 1 0.460566224292031 1 0.377836406230927 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975953 chr19:45975971 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_39318 0 0 0 0 0 Cytosol 1 0.500232253329371 1 0.999535493341258 hm5C_site_38666 DeepMRMD:1;iRNA_m5C:0.999535493341258 38667 chr19 45975971 45975971 1 + G T UCEC 45975954 + 45975934 45975974 41 AGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGAGATT AGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGTGAGATATT < 41bp 1 0.56005414219442 1 0.368470668792725 experiment 0.879891715611161 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FOSB ENSG00000125740 CDS Human protein_coding chr19:45975954 chr19:45975971 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_39319 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_38667 DeepMRMD:1;iRNA_m5C:0.999536712157815 38668 chr16 1550429 1550429 1 + A G UCEC 1550440 + 1550420 1550460 41 CACGTCAGCAAGGCTGTCCTCATCTGCCTGGCGCAACTCGG CACGTCAGCGAGGCTGTCCTCATCTGCCTGGCGCAACTCGG < 41bp 1 0.364116802795205 1 0.266157776117325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550440 chr16:1550429 nonsynonymous SNV 0.654 3 10 hm5C_associated_SNPs_39320 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38668 DeepMRMD:1;iRNA_m5C:0.999536712157815 38669 chr1 28975184 28975184 1 + G T UCEC 28975176 + 28975156 28975196 41 TGCTCTGCGTGCGGAATCGACATCAAGAGATTTCGGAAGCA TGCTCTGCGTGCGGAATCGACATCAAGATATTTCGGAAGCA < 41bp 1 0.569700862440325 1 0.0594179332256317 experiment 0.860598275119351 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975176 chr1:28975184 . . 0 29 hm5C_associated_SNPs_39322 0 0 1 2 0 unknown 1 0.500227452886653 1 0.999545094226694 hm5C_site_38669 DeepMRMD:1;iRNA_m5C:0.999545094226694 38670 chr1 23208861 23208861 1 + C T UCEC 23208855 + 23208835 23208875 41 TCTGGCCTCTCTTCCAGCTCCATCGGCAGTGTCCATCATGC TCTGGCCTCTCTTCCAGCTCCATCGGTAGTGTCCATCATGC < 41bp 1 0.21421250869656 1 0.0624884068965912 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23208855 chr1:23208861 nonsynonymous SNV 0.827 0 27 hm5C_associated_SNPs_39323 0 0 0 0 1 Endoplasmic reticulum 1 0.500231645600071 1 0.999536708799857 hm5C_site_38670 DeepMRMD:1;iRNA_m5C:0.999536708799857 38671 chr6 126210647 126210647 1 + G T UCEC 126210642 + 126210622 126210662 41 TGATGTTGAACTGAAGGGGGCGCTAGATTTAGAAACCTGTG TGATGTTGAACTGAAGGGGGCGCTATATTTAGAAACCTGTG < 41bp 1 0.294032923386003 1 0.373082548379898 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCOA7 ENSG00000111912 CDS Human protein_coding chr6:126210642 chr6:126210647 nonsynonymous SNV 0.991 4 26 hm5C_associated_SNPs_39324 0 0 1 0 0 Ribosome 1 0.500231643927084 1 0.999536712145833 hm5C_site_38671 DeepMRMD:1;iRNA_m5C:0.999536712145833 38672 chr17 45673810 45673810 1 + T G UCEC 45673802 + 45673782 45673822 41 GGACCAAACAAATGGGATTTCCCCTCATTTATGTGGAAGCT GGACCAAACAAATGGGATTTCCCCTCATGTATGTGGAAGCT < 41bp 1 0.142187886136834 1 0.0602296888828278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45673802 chr17:45673810 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_39325 0 0 1 0 2 Nucleus 1 0.500231643958964 1 0.999536712082071 hm5C_site_38672 DeepMRMD:1;iRNA_m5C:0.999536712082071 38673 chr19 40718801 40718801 1 + G T UCEC 40718786 + 40718766 40718806 41 GGACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTG GGACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTG < 41bp 1 0.057309593311509 1 0.108490735292435 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718786 chr19:40718801 stopgain 1.000 0 36 hm5C_associated_SNPs_39326 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643902102 1 0.999536712195796 hm5C_site_38673 DeepMRMD:1;iRNA_m5C:0.999536712195796 38674 chr19 40718801 40718801 1 + G T UCEC 40718787 + 40718767 40718807 41 GACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGG GACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTGG < 41bp 1 0.215891286820969 1 0.414656341075897 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718787 chr19:40718801 stopgain 1.000 0 35 hm5C_associated_SNPs_39327 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164646064 1 0.99953670707872 hm5C_site_38674 DeepMRMD:1;iRNA_m5C:0.99953670707872 38675 chr19 40718801 40718801 1 + G T UCEC 40718788 + 40718768 40718808 41 ACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGT ACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTGGT < 41bp 1 0.226693283368256 1 0.630755841732025 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718788 chr19:40718801 stopgain 1.000 0 34 hm5C_associated_SNPs_39328 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920583 0.73848831653595 0.999536712158834 hm5C_site_38675 DeepMRMD:0.73848831653595;iRNA_m5C:0.999536712158834 38676 chr19 40718801 40718801 1 + G T UCEC 40718789 + 40718769 40718809 41 CATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTC CATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTGGTC < 41bp 1 0.208688356490712 1 0.655530154705048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718789 chr19:40718801 stopgain 1.000 0 33 hm5C_associated_SNPs_39329 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164710123 0.688939690589904 0.99953670579754 hm5C_site_38676 DeepMRMD:0.688939690589904;iRNA_m5C:0.99953670579754 38677 chr19 40718801 40718801 1 + G T UCEC 40718790 + 40718770 40718810 41 ATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTCG ATGGAGCCGCGGTGGGCCCCCAAAGAAGGAATAACTGGTCG < 41bp 1 0.3591679400741 1 0.823045134544373 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718790 chr19:40718801 stopgain 1.000 0 32 hm5C_associated_SNPs_39330 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920279 0.353909730911254 0.999536712159443 hm5C_site_38677 DeepMRMD:0.353909730911254;iRNA_m5C:0.999536712159443 38678 chr14 104642355 104642355 1 + G A UCEC 104642339 + 104642319 104642359 41 CCCTGGCCTCGGGGTCCCGGCCAGTCAGCATCATCAGCAGC CCCTGGCCTCGGGGTCCCGGCCAGTCAGCATCATCAACAGC < 41bp 1 0.0853153561785915 1 0.0652835369110107 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642339 chr14:104642355 nonsynonymous SNV 0.984 4 37 hm5C_associated_SNPs_39331 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_38678 DeepMRMD:1;iRNA_m5C:0.999536712157815 38679 chr14 104642355 104642355 1 + G A UCEC 104642340 + 104642320 104642360 41 CCTGGCCTCGGGGTCCCGGCCAGTCAGCATCATCAGCAGCA CCTGGCCTCGGGGTCCCGGCCAGTCAGCATCATCAACAGCA < 41bp 1 0.0891792982346275 1 0.0759079456329346 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104642340 chr14:104642355 nonsynonymous SNV 0.984 4 36 hm5C_associated_SNPs_39332 0 0 0 0 0 Ribosome 1 0.500239915523932 1 0.999520168952136 hm5C_site_38679 DeepMRMD:1;iRNA_m5C:0.999520168952136 38680 chr17 46940286 46940286 1 + C A UCEC 46940294 + 46940274 46940314 41 GCCCCTTTGTTTCAATTGTCCAATTTGTGACAAGATCTTCC GCCCCTTTGTTTAAATTGTCCAATTTGTGACAAGATCTTCC < 41bp 1 0.114108801456432 1 0.141927272081375 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46940294 chr17:46940286 nonsynonymous SNV 0.731 0 13 hm5C_associated_SNPs_39333 0 0 1 0 1 Ribosome 1 0.500241957064875 1 0.99951608587025 hm5C_site_38680 DeepMRMD:1;iRNA_m5C:0.99951608587025 38681 chr13 113487180 113487180 1 + G A UCEC 113487177 + 113487157 113487197 41 GAACTGCTTTTTTATAGGAGCGCGAGGAGCTGTTTTTCCGG GAACTGCTTTTTTATAGGAGCGCAAGGAGCTGTTTTTCCGG < 41bp 1 0.429284512597813 1 0.30789703130722 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487177 chr13:113487180 nonsynonymous SNV 0.605 3 24 hm5C_associated_SNPs_39334 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_38681 DeepMRMD:1;iRNA_m5C:0.999536712157815 38682 chr19 48259803 48259803 1 + C T UCEC 48259799 + 48259779 48259819 41 CTGTAGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAG CTGTAGCCCGAGGGCAACATCCTTTGAGACCGGTTCAAGAG < 41bp 1 0.0744638895625909 1 0.145956605672836 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259799 chr19:48259803 stopgain 0.513 0 25 hm5C_associated_SNPs_39335 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_38682 DeepMRMD:1;iRNA_m5C:0.999536712157815 38683 chr6 44274729 44274729 1 + G T UCEC 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGTCGAGCTGTGCGTTTATCCATGGAGATCTTAAAGGCACC < 41bp 1 0.607874706809528 1 0.825486660003662 experiment 0.784250586380944 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274729 nonsynonymous SNV 0.148 2 18 hm5C_associated_SNPs_39336 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.349026679992676 0.999536712157815 hm5C_site_38683 DeepMRMD:0.349026679992676;iRNA_m5C:0.999536712157815 38684 chr3 124160811 124160811 1 + G A UCEC 124160800 + 124160780 124160820 41 TGTCTTTCGCAGGCCTGCACCCTGGCTCGGCGGAATGCTGA TGTCTTTCGCAGGCCTGCACCCTGGCTCGGCAGAATGCTGA < 41bp 1 0.11428918198221 1 0.528160929679871 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient KALRN ENSG00000160145 CDS Human protein_coding chr3:124160800 chr3:124160811 nonsynonymous SNV 0.963 4 32 hm5C_associated_SNPs_39337 0 0 0 0 2 nucleoplasm 1 0.500231643921092 0.943678140640258 0.999536712157815 hm5C_site_38684 DeepMRMD:0.943678140640258;iRNA_m5C:0.999536712157815 38685 chr20 62187824 62187824 1 + G A UCEC 62187844 + 62187824 62187864 41 GTCCGAAACCTGCTGCCCAACCGATCCTATAAGTTCACCAT ATCCGAAACCTGCTGCCCAACCGATCCTATAAGTTCACCAT < 41bp 1 0.219333810453504 1 0.37361353635788 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FNDC11 ENSG00000125531 CDS Human protein_coding chr20:62187844 chr20:62187824 nonsynonymous SNV 0.058 0 1 hm5C_associated_SNPs_39338 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38685 DeepMRMD:1;iRNA_m5C:0.999536712157815 38686 chr19 42857192 42857192 1 + C T UCEC 42857193 + 42857173 42857213 41 CACACCCGCCCCGGGTCCGCCAGCCCCCCGCTGCTCCCGGG CACACCCGCCCCGGGTCCGTCAGCCCCCCGCTGCTCCCGGG < 41bp 1 0.250943765732785 1 0.687950134277344 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42857193 chr19:42857192 nonsynonymous SNV 0.150 1 20 hm5C_associated_SNPs_39339 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643914534 0.624099731445312 0.999536712170932 hm5C_site_38686 DeepMRMD:0.624099731445312;iRNA_m5C:0.999536712170932 38687 chr1 231401114 231401114 1 + G A UCEC 231401132 + 231401112 231401152 41 TGGCAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA TGACAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA < 41bp 1 0.388008004463519 1 0.0419053137302399 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401132 chr1:231401114 nonsynonymous SNV 0.998 2 3 hm5C_associated_SNPs_39340 0 0 1 0 2 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_38687 DeepMRMD:1;iRNA_m5C:0.999536712157812 38688 chr20 3520943 3520943 1 + A T UCEC 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGTTGG < 41bp 1 0.0197781113786359 1 0.106897234916687 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520943 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_39341 0 0 1 0 2 Ribosome 1 0.500231643922223 1 0.999536712155554 hm5C_site_38688 DeepMRMD:1;iRNA_m5C:0.999536712155554 38689 chr7 6631412 6631412 1 + C T UCEC 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGCCCTCAAGGGAACAAAGCCGATGACAGCTGGATGAGCT < 41bp 1 0.16843910611285 1 0.35232800245285 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631412 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_39342 0 0 1 0 2 chromatin 1 0.500231629957827 1 0.999536740084346 hm5C_site_38689 DeepMRMD:1;iRNA_m5C:0.999536740084346 38690 chr7 6631412 6631412 1 + C T UCEC 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGCCCTCAAGGGAACAAAGCCGATGACAGCTGGATGAGCTT < 41bp 1 0.376946984260668 1 0.517792344093323 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631412 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_39343 0 0 1 0 2 chromatin 1 0.500231643897484 0.964415311813354 0.999536712205032 hm5C_site_38690 DeepMRMD:0.964415311813354;iRNA_m5C:0.999536712205032 38691 chr21 45876557 45876557 1 + G A UCEC 45876551 + 45876531 45876571 41 GGCACCGTGCGCCCACCTCGCCCCTCGCTCCTGCTGGTCTC GGCACCGTGCGCCCACCTCGCCCCTCACTCCTGCTGGTCTC < 41bp 1 0.362528081890746 1 0.235144913196564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRRC3 ENSG00000160233 CDS Human protein_coding chr21:45876551 chr21:45876557 synonymous SNV . 0 27 hm5C_associated_SNPs_39344 0 0 1 0 0 exosome 1 0.500231635383171 1 0.999536729233657 hm5C_site_38691 DeepMRMD:1;iRNA_m5C:0.999536729233657 38692 chr11 67258381 67258381 1 + C T UCEC 67258390 + 67258370 67258410 41 CTGTGGTGAGCCGAGAGCTGCAGGCCCTGGAGGCACGGATC CTGTGGTGAGCTGAGAGCTGCAGGCCCTGGAGGCACGGATC < 41bp 1 0.591498846492498 1 0.645862817764282 experiment 0.817002307015005 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AIP ENSG00000110711 CDS Human protein_coding chr11:67258390 chr11:67258381 stopgain 0.972 0 12 hm5C_associated_SNPs_39346 1 0 1 0 0 Ribosome 1 0.500231570511588 0.708274364471436 0.999536858976824 hm5C_site_38692 DeepMRMD:0.708274364471436;iRNA_m5C:0.999536858976824 Somatotroph adenoma Somatotroph adenoma 38693 chr11 65273327 65273327 1 + G A UCEC 65273337 + 65273317 65273357 41 TGCTGGGTGGGAACATGTAACTTGTAGACTGGAGAAGATAG TGCTGGGTGGAAACATGTAACTTGTAGACTGGAGAAGATAG < 41bp 1 0.687376201362697 1 0.118680000305176 experiment 0.625247597274606 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273337 chr11:65273327 . . 0 11 hm5C_associated_SNPs_39348 0 0 1 0 0 unknown 1 0.500263908555499 1 0.999472182889002 hm5C_site_38693 DeepMRMD:1;iRNA_m5C:0.999472182889002 38694 chr11 65267170 65267170 1 + G T UCEC 65267153 + 65267133 65267173 41 AAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAAGAAT AAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAATAAT < 41bp 1 0.678890880122835 1 0.690313160419464 experiment 0.642218239754331 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267153 chr11:65267170 . . 0 38 hm5C_associated_SNPs_39349 0 0 1 1 0 unknown 1 0.500231664678878 0.619373679161072 0.999536670642243 hm5C_site_38694 DeepMRMD:0.619373679161072;iRNA_m5C:0.999536670642243 38695 chr3 37367176 37367176 1 + A C UCEC 37367165 + 37367145 37367185 41 TACAACTAAAGTTAAGGAGGCACTGTTAATTAAAACTTGCA TACAACTAAAGTTAAGGAGGCACTGTTAATTCAAACTTGCA < 41bp 1 0.0706973943829179 1 0.0695053935050964 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367165 chr3:37367176 nonsynonymous SNV 0.033 0 32 hm5C_associated_SNPs_39350 0 0 1 0 0 Cytosol 1 0.500231643929899 1 0.999536712140202 hm5C_site_38695 DeepMRMD:1;iRNA_m5C:0.999536712140202 38696 chr3 37367176 37367176 1 + A C UCEC 37367167 + 37367147 37367187 41 CAACTAAAGTTAAGGAGGCACTGTTAATTAAAACTTGCACA CAACTAAAGTTAAGGAGGCACTGTTAATTCAAACTTGCACA < 41bp 1 0.0955740028517519 1 0.039103776216507 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367167 chr3:37367176 nonsynonymous SNV 0.033 0 30 hm5C_associated_SNPs_39351 0 0 1 0 0 Cytosol 1 0.500231644079719 1 0.999536711840562 hm5C_site_38696 DeepMRMD:1;iRNA_m5C:0.999536711840562 38697 chr12 6979520 6979520 1 + C A UCEC 6979504 + 6979484 6979524 41 CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGG CTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTAGTGG < 41bp 1 0.118357918804843 1 0.0448572635650635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979504 chr12:6979520 nonsynonymous SNV 0.976 4 37 hm5C_associated_SNPs_39352 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38697 DeepMRMD:1;iRNA_m5C:0.999536712157815 38698 chr12 6979520 6979520 1 + C A UCEC 6979508 + 6979488 6979528 41 CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTCGTGGACAT CTTGTGGGTGGTGCTTCCCTCAAGCCCGAATTAGTGGACAT < 41bp 1 0.574196395797418 1 0.788998007774353 experiment 0.851607208405164 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979508 chr12:6979520 nonsynonymous SNV 0.976 4 33 hm5C_associated_SNPs_39353 0 0 1 0 1 Ribosome 1 0.500231643553101 0.422003984451294 0.999536712893797 hm5C_site_38698 DeepMRMD:0.422003984451294;iRNA_m5C:0.999536712893797 38699 chr1 22333420 22333420 1 + G A UCEC 22333404 + 22333384 22333424 41 CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGT CTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATACCGT < 41bp 1 0.244942341814472 1 0.12395167350769 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333404 chr1:22333420 nonsynonymous SNV 0.285 1 37 hm5C_associated_SNPs_39355 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920373 1 0.999536712159254 hm5C_site_38699 DeepMRMD:1;iRNA_m5C:0.999536712159254 38700 chr1 22333420 22333420 1 + G A UCEC 22333406 + 22333386 22333426 41 CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCC CATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATACCGTCC < 41bp 1 0.327140609985656 1 0.0672116279602051 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333406 chr1:22333420 nonsynonymous SNV 0.285 1 35 hm5C_associated_SNPs_39356 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644345322 1 0.999536711309357 hm5C_site_38700 DeepMRMD:1;iRNA_m5C:0.999536711309357 38701 chr1 22333420 22333420 1 + G A UCEC 22333407 + 22333387 22333427 41 ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCA ATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATACCGTCCA < 41bp 1 0.247360710433921 1 0.145441979169846 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333407 chr1:22333420 nonsynonymous SNV 0.285 1 34 hm5C_associated_SNPs_39357 0 0 0 0 2 Endoplasmic reticulum 1 0.500238654286222 1 0.999522691427556 hm5C_site_38701 DeepMRMD:1;iRNA_m5C:0.999522691427556 38702 chr1 22333420 22333420 1 + G A UCEC 22333408 + 22333388 22333428 41 TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCAG TCAAGCTCTCACGCAGCGCCCAGCTGGGAGATACCGTCCAG < 41bp 1 0.686378932836609 1 0.30816251039505 experiment 0.627242134326782 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333408 chr1:22333420 nonsynonymous SNV 0.285 1 33 hm5C_associated_SNPs_39358 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_38702 DeepMRMD:1;iRNA_m5C:0.999536712157815 38703 chr1 22333420 22333420 1 + G A UCEC 22333421 + 22333401 22333441 41 CAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCC CAGCGCCCAGCTGGGAGATACCGTCCAGCTCGCCTCACTCC < 41bp 1 0.119823591825638 1 0.216858983039856 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333421 chr1:22333420 nonsynonymous SNV 0.285 1 20 hm5C_associated_SNPs_39359 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_38703 DeepMRMD:1;iRNA_m5C:0.999536712157815 38704 chr1 22333420 22333420 1 + G A UCEC 22333422 + 22333402 22333442 41 AGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCC AGCGCCCAGCTGGGAGATACCGTCCAGCTCGCCTCACTCCC < 41bp 1 0.410219601733739 1 0.363669335842133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333422 chr1:22333420 nonsynonymous SNV 0.285 1 19 hm5C_associated_SNPs_39360 0 0 0 0 2 Endoplasmic reticulum 1 0.500231595747642 1 0.999536808504716 hm5C_site_38704 DeepMRMD:1;iRNA_m5C:0.999536808504716 38705 chr1 22333420 22333420 1 + G A UCEC 22333425 + 22333405 22333445 41 GCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCC GCCCAGCTGGGAGATACCGTCCAGCTCGCCTCACTCCCTCC < 41bp 1 0.375652317437518 1 0.162423074245453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333425 chr1:22333420 nonsynonymous SNV 0.285 1 16 hm5C_associated_SNPs_39361 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_38705 DeepMRMD:1;iRNA_m5C:0.999536712157815 38706 chr1 22333420 22333420 1 + G A UCEC 22333426 + 22333406 22333446 41 CCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCC CCCAGCTGGGAGATACCGTCCAGCTCGCCTCACTCCCTCCC < 41bp 1 0.563038300681093 1 0.570984661579132 experiment 0.873923398637815 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333426 chr1:22333420 nonsynonymous SNV 0.285 1 15 hm5C_associated_SNPs_39362 0 0 0 0 2 Endoplasmic reticulum 1 0.50008585256804 0.858030676841736 0.999828294863921 hm5C_site_38706 DeepMRMD:0.858030676841736;iRNA_m5C:0.999828294863921 38707 chr1 22333420 22333420 1 + G A UCEC 22333429 + 22333409 22333449 41 AGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCT AGCTGGGAGATACCGTCCAGCTCGCCTCACTCCCTCCCGCT < 41bp 1 0.547112932029562 1 0.460170179605484 experiment 0.905774135940876 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333429 chr1:22333420 nonsynonymous SNV 0.285 1 12 hm5C_associated_SNPs_39363 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921055 1 0.99953671215789 hm5C_site_38707 DeepMRMD:1;iRNA_m5C:0.99953671215789 38708 chr1 22333420 22333420 1 + G A UCEC 22333431 + 22333411 22333451 41 CTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGG CTGGGAGATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGG < 41bp 1 0.661495275951104 1 0.476570069789886 experiment 0.677009448097792 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333431 chr1:22333420 nonsynonymous SNV 0.285 1 10 hm5C_associated_SNPs_39364 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_38708 DeepMRMD:1;iRNA_m5C:0.999536712157815 38709 chr1 22333420 22333420 1 + G A UCEC 22333433 + 22333413 22333453 41 GGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG GGGAGATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTG < 41bp 1 0.235274826556642 1 0.0788281261920929 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333433 chr1:22333420 nonsynonymous SNV 0.285 1 8 hm5C_associated_SNPs_39365 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_38709 DeepMRMD:1;iRNA_m5C:0.999536712157815 38710 chr1 22333420 22333420 1 + G A UCEC 22333434 + 22333414 22333454 41 GGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA GGAGATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGA < 41bp 1 0.225696862598112 1 0.251235783100128 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333434 chr1:22333420 nonsynonymous SNV 0.285 1 7 hm5C_associated_SNPs_39366 0 0 0 0 2 Endoplasmic reticulum 1 0.500232798537405 1 0.99953440292519 hm5C_site_38710 DeepMRMD:1;iRNA_m5C:0.99953440292519 38711 chr1 22333420 22333420 1 + G A UCEC 22333436 + 22333416 22333456 41 AGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA AGATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACA < 41bp 1 0.115416442695975 1 0.276130706071854 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333436 chr1:22333420 nonsynonymous SNV 0.285 1 5 hm5C_associated_SNPs_39367 0 0 0 0 2 Endoplasmic reticulum 1 0.500232327501257 1 0.999535344997485 hm5C_site_38711 DeepMRMD:1;iRNA_m5C:0.999535344997485 38712 chr1 22333420 22333420 1 + G A UCEC 22333438 + 22333418 22333458 41 ATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC ATACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATC < 41bp 1 0.34059506942122 1 0.156081914901733 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333438 chr1:22333420 nonsynonymous SNV 0.285 1 3 hm5C_associated_SNPs_39368 0 0 0 0 2 Endoplasmic reticulum 1 0.50023242366783 1 0.999535152664339 hm5C_site_38712 DeepMRMD:1;iRNA_m5C:0.999535152664339 38713 chr1 22333420 22333420 1 + G A UCEC 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT ACCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT < 41bp 1 0.0963724171603498 1 0.130265116691589 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333420 nonsynonymous SNV 0.285 1 1 hm5C_associated_SNPs_39369 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643031738 1 0.999536713936525 hm5C_site_38713 DeepMRMD:1;iRNA_m5C:0.999536713936525 38714 chr19 1083024 1083024 1 + G T UCEC 1083027 + 1083007 1083047 41 CGGGACCTGCCGCCTGAGAACCGGGCCTCGCTGCAGTACCT CGGGACCTGCCGCCTGATAACCGGGCCTCGCTGCAGTACCT < 41bp 1 0.648588089297953 1 0.802616357803345 experiment 0.702823821404095 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1083027 chr19:1083024 nonsynonymous SNV 0.068 0 18 hm5C_associated_SNPs_39370 0 0 0 0 1 chromatin 1 0.500231649816952 0.39476728439331 0.999536700366096 hm5C_site_38714 DeepMRMD:0.39476728439331;iRNA_m5C:0.999536700366096 38715 chr17 57644051 57644051 1 + G T UCEC 57644036 + 57644016 57644056 41 AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAA AGGAACTACTCCAACTTTTCCTATTCAGAAACAAATAAAAA < 41bp 1 0.089757825094531 1 0.0869445502758026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX40 ENSG00000108406 CDS Human protein_coding chr17:57644036 chr17:57644051 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_39371 0 0 1 0 2 Ribosome 1 0.500231643921057 1 0.999536712157886 hm5C_site_38715 DeepMRMD:1;iRNA_m5C:0.999536712157886 38716 chr3 9515086 9515086 1 + G A UCEC 9515077 + 9515057 9515097 41 TGCCCATGGTGTGCAGGGATCCTCAGCCCGAACTCCATCTT TGCCCATGGTGTGCAGGGATCCTCAGCCCAAACTCCATCTT < 41bp 1 0.330293804792195 1 0.0412267446517944 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9515077 chr3:9515086 nonsynonymous SNV 0.999 1 30 hm5C_associated_SNPs_39372 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38716 DeepMRMD:1;iRNA_m5C:0.999536712157815 38717 chr17 19237324 19237324 1 + G A UCEC 19237313 + 19237293 19237333 41 TTAACCCTTTCCAGGTGAACCAGCCCCAGCCGCTGACACTG TTAACCCTTTCCAGGTGAACCAGCCCCAGCCACTGACACTG < 41bp 1 0.511077916672685 1 0.365973562002182 experiment 0.97784416665463 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EPN2 ENSG00000072134 CDS Human protein_coding chr17:19237313 chr17:19237324 synonymous SNV . 0 32 hm5C_associated_SNPs_39373 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38717 DeepMRMD:1;iRNA_m5C:0.999536712157815 38718 chr7 2485684 2485684 1 + C T UCEC 2485671 + 2485651 2485691 41 CCCTGGCTTTGCCCAGACCTCTCAAGGGCACTTCGTGGGAC CCCTGGCTTTGCCCAGACCTCTCAAGGGCACTTTGTGGGAC < 41bp 1 0.680738204217342 1 0.851919233798981 experiment 0.638523591565316 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LOC101927181 ENSG00000175873 ncRNA_exonic Human other chr7:2485671 chr7:2485684 . . 0 34 hm5C_associated_SNPs_39374 0 0 1 0 0 unknown 1 0.500231643921092 0.296161532402038 0.999536712157815 hm5C_site_38718 DeepMRMD:0.296161532402038;iRNA_m5C:0.999536712157815 38719 chr14 21556231 21556231 1 + C T UCEC 21556227 + 21556207 21556247 41 AGCAGCACTCCCACCCTGGCCAGTCGAGGGATCTTAGGGCT AGCAGCACTCCCACCCTGGCCAGTTGAGGGATCTTAGGGCT < 41bp 1 0.304015851868053 1 0.130868226289749 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21556227 chr14:21556231 stopgain 1.000 0 25 hm5C_associated_SNPs_39375 0 0 1 0 1 Cytosol 1 0.500231643925154 1 0.999536712149692 hm5C_site_38719 DeepMRMD:1;iRNA_m5C:0.999536712149692 38720 chr20 37632415 37632415 1 + G A UCEC 37632421 + 37632401 37632441 41 GAAACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACT GAAACTGTTGTGTCAATGCTCATCGAGCAGGCTCGAGCACT < 41bp 1 0.352523156754734 1 0.064522922039032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632421 chr20:37632415 synonymous SNV . 0 15 hm5C_associated_SNPs_39377 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164371844 1 0.99953671256312 hm5C_site_38720 DeepMRMD:1;iRNA_m5C:0.99953671256312 38721 chr22 38201925 38201925 1 + A C UCEC 38201937 + 38201917 38201957 41 GGCATCCAAGCCCAAGAAGGCTGCCTCCAAAGCCCCAACCA GGCATCCACGCCCAAGAAGGCTGCCTCCAAAGCCCCAACCA < 41bp 1 0.442201377338665 1 0.166472494602203 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control H1F0 ENSG00000189060 CDS Human protein_coding chr22:38201937 chr22:38201925 nonsynonymous SNV 0.989 0 9 hm5C_associated_SNPs_39379 0 0 1 0 0 Ribosome 1 0.500231643922159 1 0.999536712155681 hm5C_site_38721 DeepMRMD:1;iRNA_m5C:0.999536712155681 38722 chr6 33646248 33646248 1 + G A UCEC 33646267 + 33646247 33646287 41 AGAAGTTCTGTGCAGGGAACCCCGGCAACCAGGCCCTGCTG AAAAGTTCTGTGCAGGGAACCCCGGCAACCAGGCCCTGCTG < 41bp 1 0.281974497716561 1 0.201484471559525 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33646267 chr6:33646248 synonymous SNV . 0 2 hm5C_associated_SNPs_39380 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_38722 DeepMRMD:1;iRNA_m5C:0.999536712157815 38723 chr9 134354751 134354751 1 + G A UCEC 134354743 + 134354723 134354763 41 GACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG GACGTGACCGTGCCTGGCAGCAGCCTGGACACTGAGATCTG < 41bp 1 0.267062778091664 1 0.53491348028183 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354743 chr9:134354751 nonsynonymous SNV 0.983 3 29 hm5C_associated_SNPs_39381 0 0 1 0 0 Nucleus 1 0.500231643922996 0.93017303943634 0.999536712154009 hm5C_site_38723 DeepMRMD:0.93017303943634;iRNA_m5C:0.999536712154009 38724 chr15 25220518 25220518 1 + G A UCEC 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAATAGCAAGATGCTGCAGCACATTGACTATAGA < 41bp 1 0.581020943009675 1 0.490265488624573 experiment 0.83795811398065 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220518 nonsynonymous SNV 0.997 1 10 hm5C_associated_SNPs_39382 0 0 1 2 1 Cytosol 1 0.500231644475324 1 0.999536711049351 hm5C_site_38724 DeepMRMD:1;iRNA_m5C:0.999536711049351 38725 chr8 21844759 21844759 1 + T C UCEC 21844767 + 21844747 21844787 41 GTAAGATCTACATTGGGGACCAAGTGCAGAAATCCTCTAAG GTAAGATCTACACTGGGGACCAAGTGCAGAAATCCTCTAAG < 41bp 1 0.347233274098431 1 0.639444231987 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21844767 chr8:21844759 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_39383 0 0 1 0 1 Cytosol 1 0.500231643921092 0.721111536026 0.999536712157815 hm5C_site_38725 DeepMRMD:0.721111536026;iRNA_m5C:0.999536712157815 38726 chr1 162470024 162470024 1 + A C UCEC 162470019 + 162469999 162470039 41 CTCATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCAGGT CTCATTGACTTTGGACTTAGCTTCACAGAAGGCAATCAGGT < 41bp 1 0.350634575281144 1 0.0740765929222107 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162470019 chr1:162470024 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_39384 0 0 1 0 1 chromatin 1 0.500231640088776 1 0.999536719822448 hm5C_site_38726 DeepMRMD:1;iRNA_m5C:0.999536719822448 38727 chr1 145517308 145517308 1 + C T UCEC 145517304 + 145517284 145517324 41 ATGCTTGCTCTCTTCTTGGCCATGCGCTGCAGAGGCATGGA ATGCTTGCTCTCTTCTTGGCCATGTGCTGCAGAGGCATGGA < 41bp 1 0.133431278706047 1 0.172211319208145 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145517304 chr1:145517308 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_39385 0 0 1 0 2 Ribosome 1 0.500231643542984 1 0.999536712914032 hm5C_site_38727 DeepMRMD:1;iRNA_m5C:0.999536712914032 38728 chr10 103827231 103827231 1 + G A UCEC 103827230 + 103827210 103827250 41 GCCCCTCCAGTCCCCTGCTTCGAAGTGAAATCTTCAAACTG GCCCCTCCAGTCCCCTGCTTCAAAGTGAAATCTTCAAACTG < 41bp 1 0.468303213129477 1 0.408842027187347 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control HPS6 ENSG00000166189 CDS Human protein_coding chr10:103827230 chr10:103827231 nonsynonymous SNV 0.831 0 22 hm5C_associated_SNPs_39386 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38728 DeepMRMD:1;iRNA_m5C:0.999536712157815 38729 chr5 10411479 10411479 1 + G T UCEC 10411473 + 10411453 10411493 41 ATTCTTATTTATTGGGAGACCAGGAAGAAAATGAAAACAGT ATTCTTATTTATTGGGAGACCAGGAATAAAATGAAAACAGT < 41bp 1 0.636578174341648 1 0.626469254493713 experiment 0.726843651316703 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10411473 chr5:10411479 stopgain 1.000 1 27 hm5C_associated_SNPs_39387 0 0 1 0 1 Nucleus 1 0.500231640645517 0.747061491012574 0.999536718708966 hm5C_site_38729 DeepMRMD:0.747061491012574;iRNA_m5C:0.999536718708966 38730 chr1 44436750 44436750 1 + C T UCEC 44436760 + 44436740 44436780 41 CTTCGTGCTTCGTCAACGTTCTGTGGCCTTGGAGCTCTGTG CTTCGTGCTTTGTCAACGTTCTGTGGCCTTGGAGCTCTGTG < 41bp 1 0.440561446127617 1 0.213740170001984 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPH2 ENSG00000132768 CDS Human protein_coding chr1:44436760 chr1:44436750 nonsynonymous SNV 0.012 0 11 hm5C_associated_SNPs_39388 0 0 1 0 0 nucleolus 1 0.500231418798687 1 0.999537162402625 hm5C_site_38730 DeepMRMD:1;iRNA_m5C:0.999537162402625 38731 chr17 65735679 65735679 1 + T C UCEC 65735673 + 65735653 65735693 41 TTCCTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT TTCCTGTACCTGAAGTGTAGCGAAAACGCTACTATGACTCT < 41bp 1 0.588339621730198 1 0.741016983985901 experiment 0.823320756539604 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735673 chr17:65735679 synonymous SNV . 0 27 hm5C_associated_SNPs_39389 0 0 0 0 2 Nucleus 1 0.50023164392108 0.517966032028198 0.99953671215784 hm5C_site_38731 DeepMRMD:0.517966032028198;iRNA_m5C:0.99953671215784 38732 chr20 32341115 32341115 1 + T C UCEC 32341105 + 32341085 32341125 41 TCCACCCCAGAGCCTGGGCCCCCCTGGGCGTCCCAACCCTG TCCACCCCAGAGCCTGGGCCCCCCTGGGCGCCCCAACCCTG < 41bp 1 0.305758438919005 1 0.108762741088867 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32341105 chr20:32341115 synonymous SNV . 0 31 hm5C_associated_SNPs_39390 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38732 DeepMRMD:1;iRNA_m5C:0.999536712157815 38733 chr7 930591 930591 1 + C A UCEC 930607 + 930587 930627 41 GTATCATTTTCTGCACTCAGCGGACGGGGAGGGCTGTGCCA GTATAATTTTCTGCACTCAGCGGACGGGGAGGGCTGTGCCA < 41bp 1 0.487632257530374 1 0.784032225608826 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GET4 ENSG00000239857 CDS Human protein_coding chr7:930607 chr7:930591 nonsynonymous SNV 0.850 4 5 hm5C_associated_SNPs_39391 0 0 1 0 1 Cytosol 1 0.500231643921092 0.431935548782348 0.999536712157815 hm5C_site_38733 DeepMRMD:0.431935548782348;iRNA_m5C:0.999536712157815 38734 chr18 60642764 60642764 1 + G A UCEC 60642776 + 60642756 60642796 41 TCTCTGTCGAAATGGAAAGCCGCTGCCTCTGTCCAGATCTT TCTCTGTCAAAATGGAAAGCCGCTGCCTCTGTCCAGATCTT < 41bp 1 0.0882436556559662 1 0.197077125310898 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60642776 chr18:60642764 nonsynonymous SNV 0.994 2 9 hm5C_associated_SNPs_39392 0 0 0 0 1 Cytosol 1 0.500231643869047 1 0.999536712261905 hm5C_site_38734 DeepMRMD:1;iRNA_m5C:0.999536712261905 38735 chr20 44526721 44526721 1 + C A UCEC 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTATC < 41bp 1 0.629660855918504 1 0.50862729549408 experiment 0.740678288162991 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526721 nonsynonymous SNV 0.899 3 39 hm5C_associated_SNPs_39393 0 0 1 2 2 Ribosome 1 0.500231643921093 0.98274540901184 0.999536712157814 hm5C_site_38735 DeepMRMD:0.98274540901184;iRNA_m5C:0.999536712157814 38736 chr16 23700836 23700836 1 + C T UCEC 23700824 + 23700804 23700844 41 TTTTCATCCAGATCACCCTCCTTAAATATTTCCGCAATTAC TTTTCATCCAGATCACCCTCCTTAAATATTTCTGCAATTAC < 41bp 1 0.109203067149855 1 0.132362365722656 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700824 chr16:23700836 nonsynonymous SNV 0.998 3 33 hm5C_associated_SNPs_39394 0 0 1 0 1 Ribosome 1 0.500231643921114 1 0.999536712157772 hm5C_site_38736 DeepMRMD:1;iRNA_m5C:0.999536712157772 38737 chr11 65267072 65267072 1 + G T UCEC 65267054 + 65267034 65267074 41 AAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGA AAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATTGA < 41bp 1 0.433393305066301 1 0.131114840507507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267054 chr11:65267072 . . 0 39 hm5C_associated_SNPs_39395 0 0 1 1 0 unknown 1 0.500231643919966 1 0.999536712160067 hm5C_site_38737 DeepMRMD:1;iRNA_m5C:0.999536712160067 38738 chr11 65267072 65267072 1 + G T UCEC 65267059 + 65267039 65267079 41 TAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGAT TAGTTAACGCATTTACTAAACGCAGACGAAAATTGAAAGAT < 41bp 1 0.435069760240893 1 0.485564857721329 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267059 chr11:65267072 . . 0 34 hm5C_associated_SNPs_39396 0 0 1 1 0 unknown 1 0.500189282410034 1 0.999621435179932 hm5C_site_38738 DeepMRMD:1;iRNA_m5C:0.999621435179932 38739 chr11 65267072 65267072 1 + G T UCEC 65267061 + 65267041 65267081 41 GTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTA GTTAACGCATTTACTAAACGCAGACGAAAATTGAAAGATTA < 41bp 1 0.22913850703613 1 0.167847812175751 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267061 chr11:65267072 . . 0 32 hm5C_associated_SNPs_39397 0 0 1 1 0 unknown 1 0.50023077269211 1 0.99953845461578 hm5C_site_38739 DeepMRMD:1;iRNA_m5C:0.99953845461578 38740 chr11 65267072 65267072 1 + G T UCEC 65267065 + 65267045 65267085 41 ACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTG ACGCATTTACTAAACGCAGACGAAAATTGAAAGATTAATTG < 41bp 1 0.396895923304292 1 0.41642290353775 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267065 chr11:65267072 . . 0 28 hm5C_associated_SNPs_39398 0 0 1 1 0 unknown 1 0.500231617852169 1 0.999536764295663 hm5C_site_38740 DeepMRMD:1;iRNA_m5C:0.999536764295663 38741 chr11 9451364 9451364 1 + G T UCEC 9451359 + 9451339 9451379 41 TGAAGAAGTTACTCCTATTGCAGTAGAAATGACACAACATT TGAAGAAGTTACTCCTATTGCAGTATAAATGACACAACATT < 41bp 1 0.524072171826421 1 0.42984065413475 experiment 0.951855656347158 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9451359 chr11:9451364 stopgain 1.000 1 26 hm5C_associated_SNPs_39400 0 0 0 0 1 Cytosol 1 0.500231690435691 1 0.999536619128617 hm5C_site_38741 DeepMRMD:1;iRNA_m5C:0.999536619128617 38742 chr1 79128405 79128405 1 + G T UCEC 79128401 + 79128381 79128421 41 TATTGCAGCTAGAGGAAGTCCAAAGAAAACTTGGATTTGCT TATTGCAGCTAGAGGAAGTCCAAATAAAACTTGGATTTGCT < 41bp 1 0.192330415904517 1 0.275483757257462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IFI44 ENSG00000137965 CDS Human protein_coding chr1:79128401 chr1:79128405 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_39401 0 0 0 0 1 exosome 1 0.500229792491896 1 0.999540415016208 hm5C_site_38742 DeepMRMD:1;iRNA_m5C:0.999540415016208 38743 chrX 123229233 123229233 1 + G T UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAATAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.475693464605398 1 0.543383181095123 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229233 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_39402 0 0 1 0 2 Nucleus 1 0.500231643921115 0.913233637809754 0.999536712157771 hm5C_site_38743 DeepMRMD:0.913233637809754;iRNA_m5C:0.999536712157771 38744 chrX 71401658 71401658 1 + G A UCEC 71401639 + 71401619 71401659 41 AACAACAAGCTTCCAAGATGCCGCCCAAAGGAAAAAGTGGT AACAACAAGCTTCCAAGATGCCGCCCAAAGGAAAAAGTGAT < 41bp 1 0.139319802208412 1 0.280143409967422 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIN4 ENSG00000102309 CDS Human protein_coding chrX:71401639 chrX:71401658 nonsynonymous SNV 0.997 2 40 hm5C_associated_SNPs_39403 0 0 1 0 1 Ribosome 1 0.500231643921307 1 0.999536712157387 hm5C_site_38744 DeepMRMD:1;iRNA_m5C:0.999536712157387 38745 chr12 104720179 104720179 1 + G A UCEC 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACAAGAAAAATTGGCTTAGAAACCATAGGGGTGAA < 41bp 1 0.224297347592138 1 0.0507263839244843 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720179 nonsynonymous SNV 0.901 0 31 hm5C_associated_SNPs_39404 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38745 DeepMRMD:1;iRNA_m5C:0.999536712157815 38746 chr1 180034367 180034367 1 + A G UCEC 180034360 + 180034340 180034380 41 ATCTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA ATCTCCAGCAGTGAAACTAGCAGCATTGTGCAGAAACTGAA < 41bp 1 0.601351176007477 1 0.244284898042679 experiment 0.797297647985045 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180034360 chr1:180034367 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_39405 0 0 1 0 1 Nucleus 1 0.500232258858139 1 0.999535482283722 hm5C_site_38746 DeepMRMD:1;iRNA_m5C:0.999535482283722 38747 chr6 148865741 148865741 1 + A G UCEC 148865756 + 148865736 148865776 41 CTCTCAGGGCAGGCGCCTGGCAGCCCACCAAGCACAAGGCC CTCTCGGGGCAGGCGCCTGGCAGCCCACCAAGCACAAGGCC < 41bp 1 0.399661302111133 1 0.579642772674561 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148865756 chr6:148865741 synonymous SNV . 0 6 hm5C_associated_SNPs_39406 0 0 0 0 0 Cytosol 1 0.500231643921092 0.840714454650878 0.999536712157816 hm5C_site_38747 DeepMRMD:0.840714454650878;iRNA_m5C:0.999536712157816 38748 chr2 233656045 233656045 1 + G C UCEC 233656051 + 233656031 233656071 41 ATCAGTCTCAGGAAGCATCACAGTTTGAGAGGAAAGATGAA ATCAGTCTCAGGAACCATCACAGTTTGAGAGGAAAGATGAA < 41bp 1 0.154402517330756 1 0.619334757328033 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233656051 chr2:233656045 nonsynonymous SNV 0.940 0 15 hm5C_associated_SNPs_39407 0 0 1 0 2 Nucleus 1 0.500231643920998 0.761330485343934 0.999536712158005 hm5C_site_38748 DeepMRMD:0.761330485343934;iRNA_m5C:0.999536712158005 38749 chr12 69128518 69128518 1 + A G UCEC 69128531 + 69128511 69128551 41 GTGGTTTAAGCATATGAATTCAGTTCCACAAAAACCTGCTT GTGGTTTGAGCATATGAATTCAGTTCCACAAAAACCTGCTT < 41bp 1 0.205794492230461 1 0.392956793308258 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69128531 chr12:69128518 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_39408 0 0 1 0 2 chromatin 1 0.500176003738165 1 0.99964799252367 hm5C_site_38749 DeepMRMD:1;iRNA_m5C:0.99964799252367 38750 chr12 108961079 108961079 1 + C T UCEC 108961066 + 108961046 108961086 41 TAAGTCTCTGCTCTCCATACCAGTCAGCTGGGACATTTGGC TAAGTCTCTGCTCTCCATACCAGTCAGCTGGGATATTTGGC < 41bp 1 0.0652132453613697 1 0.318104296922684 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ISCU ENSG00000136003 CDS Human protein_coding chr12:108961066 chr12:108961079 synonymous SNV . 0 34 hm5C_associated_SNPs_39409 0 0 1 0 0 Cytosol 1 0.500231643921077 1 0.999536712157845 hm5C_site_38750 DeepMRMD:1;iRNA_m5C:0.999536712157845 38751 chr19 1055305 1055305 1 + T C UCEC 1055304 + 1055284 1055324 41 AGAACCTGACAGGCCGGAACCTGTCTGACTTCCTGGTCAAG AGAACCTGACAGGCCGGAACCCGTCTGACTTCCTGGTCAAG < 41bp 1 0.0467265799131949 1 0.0526978075504303 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1055304 chr19:1055305 nonsynonymous SNV 0.495 3 22 hm5C_associated_SNPs_39410 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164290058 1 0.99953671419884 hm5C_site_38751 DeepMRMD:1;iRNA_m5C:0.99953671419884 38752 chr15 41192193 41192193 1 + C T UCEC 41192201 + 41192181 41192221 41 TACCACGTGCAACGGGAGGCCCGAGATGTCTGGCGCACCTA TACCACGTGCAATGGGAGGCCCGAGATGTCTGGCGCACCTA < 41bp 1 0.335638953891639 1 0.487099021673203 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192201 chr15:41192193 nonsynonymous SNV 0.990 4 13 hm5C_associated_SNPs_39411 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38752 DeepMRMD:1;iRNA_m5C:0.999536712157815 38753 chr19 19308390 19308390 1 + C G UCEC 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGG < 41bp 1 0.349630605998159 1 0.0867907106876373 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308390 nonsynonymous SNV 0.050 3 41 hm5C_associated_SNPs_39413 0 0 1 0 2 Ribosome 1 0.500231643295649 1 0.999536713408701 hm5C_site_38753 DeepMRMD:1;iRNA_m5C:0.999536713408701 38754 chr19 19308390 19308390 1 + C G UCEC 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGGC < 41bp 1 0.307401339105068 1 0.107650250196457 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308390 nonsynonymous SNV 0.050 3 40 hm5C_associated_SNPs_39414 0 0 1 0 2 Ribosome 1 0.500231643891538 1 0.999536712216924 hm5C_site_38754 DeepMRMD:1;iRNA_m5C:0.999536712216924 38755 chr16 30723164 30723164 1 + G A UCEC 30723169 + 30723149 30723189 41 CCTTTAGACTCTGTGGAGGACCGGAGTGAGGATGAGGAAGA CCTTTAGACTCTGTGAAGGACCGGAGTGAGGATGAGGAAGA < 41bp 1 0.450927977746993 1 0.325367152690887 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30723169 chr16:30723164 nonsynonymous SNV 0.882 2 16 hm5C_associated_SNPs_39415 0 0 1 0 1 Ribosome 1 0.500231643921045 1 0.99953671215791 hm5C_site_38755 DeepMRMD:1;iRNA_m5C:0.99953671215791 38756 chr2 217311879 217311879 1 + C T UCEC 217311863 + 217311843 217311883 41 TTTCATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGT TTTCATGCCTTTGGACTTCGCTACTGTGATGCCAAATGGGT < 41bp 1 0.385623462371953 1 0.0658039152622223 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311863 chr2:217311879 nonsynonymous SNV 0.977 2 37 hm5C_associated_SNPs_39416 0 0 0 0 1 chromatin 1 0.50023164390334 1 0.99953671219332 hm5C_site_38756 DeepMRMD:1;iRNA_m5C:0.99953671219332 38757 chr2 217311879 217311879 1 + C T UCEC 217311866 + 217311846 217311886 41 CATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGTATG CATGCCTTTGGACTTCGCTACTGTGATGCCAAATGGGTATG < 41bp 1 0.361331416576005 1 0.0823123157024384 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311866 chr2:217311879 nonsynonymous SNV 0.977 2 34 hm5C_associated_SNPs_39417 0 0 0 0 1 chromatin 1 0.500231643921074 1 0.999536712157852 hm5C_site_38757 DeepMRMD:1;iRNA_m5C:0.999536712157852 38758 chr11 68204391 68204391 1 + C T UCEC 68204395 + 68204375 68204415 41 AGTTCCGGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG AGTTCCGGTGTGCGAGTGGCCAGTGTGTCCTCATCAAACAG < 41bp 1 0.455475175077947 1 0.520419120788574 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204395 chr11:68204391 synonymous SNV . 0 17 hm5C_associated_SNPs_39418 0 0 0 0 2 Endoplasmic reticulum 1 0.500231646043973 0.959161758422852 0.999536707912053 hm5C_site_38758 DeepMRMD:0.959161758422852;iRNA_m5C:0.999536707912053 38759 chr19 52196888 52196888 1 + C T UCEC 52196899 + 52196879 52196919 41 TACTCTGAGCGCCTCCGCATCTGCCAGATGTTTGTTGGGAT TACTCTGAGTGCCTCCGCATCTGCCAGATGTTTGTTGGGAT < 41bp 1 0.211078180899742 1 0.46190220117569 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPACA6 ENSG00000182310;ENSG00000273318 ncRNA_exonic Human other chr19:52196899 chr19:52196888 . . 0 10 hm5C_associated_SNPs_39419 0 0 1 0 0 chromatin 1 0.500231640904189 1 0.999536718191621 hm5C_site_38759 DeepMRMD:1;iRNA_m5C:0.999536718191621 38760 chr6 148865752 148865752 1 + C A UCEC 148865756 + 148865736 148865776 41 CTCTCAGGGCAGGCGCCTGGCAGCCCACCAAGCACAAGGCC CTCTCAGGGCAGGCGCATGGCAGCCCACCAAGCACAAGGCC < 41bp 1 0.413545401106748 1 0.260364562273026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SASH1 ENSG00000111961 CDS Human protein_coding chr6:148865756 chr6:148865752 nonsynonymous SNV 0.024 4 17 hm5C_associated_SNPs_39420 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38760 DeepMRMD:1;iRNA_m5C:0.999536712157815 38761 chr13 27847408 27847408 1 + T C UCEC 27847416 + 27847396 27847436 41 TAGCCAATGAGCTGGGCAGCCTGTTCCTTGAAATTTCCACT TAGCCAATGAGCCGGGCAGCCTGTTCCTTGAAATTTCCACT < 41bp 1 0.202884173264947 1 0.0801596939563751 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RASL11A ENSG00000122035 CDS Human protein_coding chr13:27847416 chr13:27847408 nonsynonymous SNV 1.000 5 13 hm5C_associated_SNPs_39421 0 0 1 0 0 Ribosome 1 0.50023166103704 1 0.999536677925919 hm5C_site_38761 DeepMRMD:1;iRNA_m5C:0.999536677925919 38762 chr4 159627843 159627843 1 + G A UCEC 159627823 + 159627803 159627843 41 GCCAGCCAAGGATTGCACACCTATTGAGTATCCAAAACCCG GCCAGCCAAGGATTGCACACCTATTGAGTATCCAAAACCCA < 41bp 1 0.142237487591441 1 0.11455512046814 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETFDH ENSG00000171503 CDS Human protein_coding chr4:159627823 chr4:159627843 nonsynonymous SNV 0.873 5 41 hm5C_associated_SNPs_39422 2 0 0 0 1 Ribosome 1 0.500231641850629 1 0.999536716298742 hm5C_site_38762 DeepMRMD:1;iRNA_m5C:0.999536716298742 not specified not specified 38763 chr11 65338937 65338937 1 + C G UCEC 65338926 + 65338906 65338946 41 CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGC CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTGTCGACCTGC < 41bp 1 0.303020299554264 1 0.0168825387954712 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338926 chr11:65338937 nonsynonymous SNV 0.072 1 32 hm5C_associated_SNPs_39424 0 0 0 0 1 Cytosol 1 0.500231661494478 1 0.999536677011043 hm5C_site_38763 DeepMRMD:1;iRNA_m5C:0.999536677011043 38764 chr16 1394285 1394285 1 + G A UCEC 1394270 + 1394250 1394290 41 TTCCAACCCTCCTTTGAGATCTGCCCCTTCGAGTCGGAGCT TTCCAACCCTCCTTTGAGATCTGCCCCTTCGAGTCAGAGCT < 41bp 1 0.168076941646837 1 0.279393970966339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394270 chr16:1394285 synonymous SNV . 0 36 hm5C_associated_SNPs_39425 0 0 0 0 2 chromatin 1 0.500231643921017 1 0.999536712157967 hm5C_site_38764 DeepMRMD:1;iRNA_m5C:0.999536712157967 38765 chr6 27101079 27101079 1 + A G UCEC 27101062 + 27101042 27101082 41 GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGGCCC < 41bp 1 0.355899314303755 1 0.25939068198204 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101062 chr6:27101079 nonsynonymous SNV 0.946 2 38 hm5C_associated_SNPs_39426 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38765 DeepMRMD:1;iRNA_m5C:0.999536712157815 38766 chr6 27101079 27101079 1 + A G UCEC 27101063 + 27101043 27101083 41 GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGGCCCG < 41bp 1 0.443929260797019 1 0.15404599905014 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101063 chr6:27101079 nonsynonymous SNV 0.946 2 37 hm5C_associated_SNPs_39427 0 0 1 0 0 Ribosome 1 0.500231643920324 1 0.999536712159352 hm5C_site_38766 DeepMRMD:1;iRNA_m5C:0.999536712159352 38767 chr14 64909120 64909120 1 + G A UCEC 64909115 + 64909095 64909135 41 TCAAGATGCACGGGGGCGGCCCCACGGTGAGTGGTGGGTTG TCAAGATGCACGGGGGCGGCCCCACAGTGAGTGGTGGGTTG < 41bp 1 0.187474700656197 1 0.329483270645142 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64909115 chr14:64909120 synonymous SNV . 0 26 hm5C_associated_SNPs_39428 0 0 1 0 1 Nucleus 1 0.500231643928621 1 0.999536712142759 hm5C_site_38767 DeepMRMD:1;iRNA_m5C:0.999536712142759 38768 chr19 14562725 14562725 1 + G A UCEC 14562705 + 14562685 14562725 41 ACCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGG ACCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGA < 41bp 1 0.135110239074447 1 0.080378919839859 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562705 chr19:14562725 nonsynonymous SNV 0.437 2 41 hm5C_associated_SNPs_39429 0 0 1 0 1 Ribosome 1 0.500231643920514 1 0.999536712158973 hm5C_site_38768 DeepMRMD:1;iRNA_m5C:0.999536712158973 38769 chr19 14562725 14562725 1 + G A UCEC 14562706 + 14562686 14562726 41 CCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGG CCATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGAG < 41bp 1 0.0551300527191485 1 0.280269473791122 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562706 chr19:14562725 nonsynonymous SNV 0.437 2 40 hm5C_associated_SNPs_39430 0 0 1 0 1 Ribosome 1 0.500231643513385 1 0.999536712973229 hm5C_site_38769 DeepMRMD:1;iRNA_m5C:0.999536712973229 38770 chr19 14562725 14562725 1 + G A UCEC 14562708 + 14562688 14562728 41 ATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGGGAC ATCCCGTGGAACCCTACCCCCTCAATGGGGGGACCTGAGAC < 41bp 1 0.681484825061827 1 0.938106596469879 experiment 0.637030349876347 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562708 chr19:14562725 nonsynonymous SNV 0.437 2 38 hm5C_associated_SNPs_39431 0 0 1 0 1 Ribosome 1 0.500231643921092 0.123786807060242 0.999536712157816 hm5C_site_38770 DeepMRMD:0.123786807060242;iRNA_m5C:0.999536712157816 38771 chr6 43417262 43417262 1 + A T UCEC 43417260 + 43417240 43417280 41 TGCCAACAAGACAGTGCTGACCATTGCCCATAGGTATGTAA TGCCAACAAGACAGTGCTGACCTTTGCCCATAGGTATGTAA < 41bp 1 0.0192336986339172 1 0.0377053320407867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43417260 chr6:43417262 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_39432 0 0 1 0 1 chromatin 1 0.500231643937822 1 0.999536712124356 hm5C_site_38771 DeepMRMD:1;iRNA_m5C:0.999536712124356 38772 chr2 32897376 32897376 1 + T C UCEC 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG CAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG < 41bp 1 0.187079139673399 1 0.213230609893799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897376 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_39433 0 0 1 0 2 Nucleus 1 0.500231644270472 1 0.999536711459057 hm5C_site_38772 DeepMRMD:1;iRNA_m5C:0.999536711459057 38773 chr19 36216690 36216690 1 + A G UCEC 36216704 + 36216684 36216724 41 TATCCAACCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG TATCCAGCCCGGGCCACGCGCAAACGGCGCCACTGGGTGAG < 41bp 1 0.162901715575548 1 0.248447805643082 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216704 chr19:36216690 nonsynonymous SNV 0.999 5 7 hm5C_associated_SNPs_39436 0 0 1 0 2 chromatin 1 0.500231643921104 1 0.999536712157793 hm5C_site_38773 DeepMRMD:1;iRNA_m5C:0.999536712157793 Multiple complex diseases 38774 chr6 36884249 36884249 1 + T A UCEC 36884229 + 36884209 36884249 41 ATACTTCTACAGGAGGAGACCTCTGAACAGATCACAAATGT ATACTTCTACAGGAGGAGACCTCTGAACAGATCACAAATGA < 41bp 1 0.215775970936069 1 0.446123540401459 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C6orf89 ENSG00000198663 CDS Human protein_coding chr6:36884229 chr6:36884249 nonsynonymous SNV 0.348 4 41 hm5C_associated_SNPs_39437 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644930288 1 0.999536710139424 hm5C_site_38774 DeepMRMD:1;iRNA_m5C:0.999536710139424 38775 chr10 104129687 104129687 1 + G A UCEC 104129695 + 104129675 104129715 41 GTCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCA GTCTAGTGTTCGAGGCCCATCCACTGAAAACCAAGAGGCCA < 41bp 1 0.15558142555161 1 0.432581961154938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129695 chr10:104129687 synonymous SNV . 0 13 hm5C_associated_SNPs_39438 0 0 1 0 2 Nucleus 1 0.500231642311603 1 0.999536715376795 hm5C_site_38775 DeepMRMD:1;iRNA_m5C:0.999536715376795 38776 chr10 104129687 104129687 1 + G A UCEC 104129696 + 104129676 104129716 41 TCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCAA TCTAGTGTTCGAGGCCCATCCACTGAAAACCAAGAGGCCAA < 41bp 1 0.458632443641747 1 0.65564352273941 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GBF1 ENSG00000107862 CDS Human protein_coding chr10:104129696 chr10:104129687 synonymous SNV . 0 12 hm5C_associated_SNPs_39439 0 0 1 0 2 Nucleus 1 0.500231643921094 0.68871295452118 0.999536712157812 hm5C_site_38776 DeepMRMD:0.68871295452118;iRNA_m5C:0.999536712157812 38777 chr19 3574393 3574393 1 + C T UCEC 3574378 + 3574358 3574398 41 AACGACGCAGCCCGGTTCTGCAGCCGGTGAAGAAACGCGGC AACGACGCAGCCCGGTTCTGCAGCCGGTGAAGAAATGCGGC < 41bp 1 0.520735260683765 1 0.619297325611115 experiment 0.958529478632471 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HMG20B ENSG00000064961 CDS Human protein_coding chr19:3574378 chr19:3574393 nonsynonymous SNV 0.995 2 36 hm5C_associated_SNPs_39440 0 0 1 0 1 Cytosol 1 0.500231643926598 0.76140534877777 0.999536712146805 hm5C_site_38777 DeepMRMD:0.76140534877777;iRNA_m5C:0.999536712146805 38778 chr11 610285 610285 1 + G A UCEC 610293 + 610273 610313 41 CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC CAGGTGTTCTCCAAGCTGCCCTTTCCCAGTCACGTGCTTCC < 41bp 1 0.0193835777486536 1 0.0175833106040955 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610293 chr11:610285 nonsynonymous SNV 0.007 2 13 hm5C_associated_SNPs_39441 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38778 DeepMRMD:1;iRNA_m5C:0.999536712157815 38779 chr20 57289643 57289643 1 + G A UCEC 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAACAGCCCCAGCTCCTGTACTGGCCTC < 41bp 1 0.413639356887233 1 0.46846216917038 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289643 nonsynonymous SNV 0.994 4 33 hm5C_associated_SNPs_39442 0 0 1 0 2 cytosol 1 0.50023164392105 1 0.9995367121579 hm5C_site_38779 DeepMRMD:1;iRNA_m5C:0.9995367121579 38780 chr21 47786895 47786895 1 + G T UCEC 47786911 + 47786891 47786931 41 TGTGGAAAAAGGACTCTCTTCACCAAACGATTTTGACTCAA TGTGTAAAAAGGACTCTCTTCACCAAACGATTTTGACTCAA < 41bp 1 0.451014912708749 1 0.788688063621521 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47786911 chr21:47786895 nonsynonymous SNV 0.001 0 5 hm5C_associated_SNPs_39443 0 0 1 0 0 Exosome 1 0.50023188375776 0.422623872756958 0.99953623248448 hm5C_site_38780 DeepMRMD:0.422623872756958;iRNA_m5C:0.99953623248448 38781 chr19 30499999 30499999 1 + G A UCEC 30500003 + 30499983 30500023 41 CAAATGTGAATGCGATGCATCAAGTAACAGACTCTCATACT CAAATGTGAATGCGATACATCAAGTAACAGACTCTCATACT < 41bp 1 0.579806845602908 1 0.195867419242859 experiment 0.840386308794185 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30500003 chr19:30499999 nonsynonymous SNV 0.002 0 17 hm5C_associated_SNPs_39444 0 0 1 0 1 Cytosol 1 0.500231912590872 1 0.999536174818256 hm5C_site_38781 DeepMRMD:1;iRNA_m5C:0.999536174818256 38782 chr16 4902950 4902950 1 + C A UCEC 4902930 + 4902910 4902950 41 TTGGTAGCCATGTCGGAGCCCCACAGGGTCCAGTTCACCTC TTGGTAGCCATGTCGGAGCCCCACAGGGTCCAGTTCACCTA < 41bp 1 0.350116393824678 1 0.190715283155441 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN1 ENSG00000118900 CDS Human protein_coding chr16:4902930 chr16:4902950 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_39445 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38782 DeepMRMD:1;iRNA_m5C:0.999536712157815 38783 chr16 15788055 15788055 1 + C T UCEC 15788047 + 15788027 15788067 41 GACGACTCCACCGGGGGGACCCCCCTCACACCTGCGGCCCG GACGACTCCACCGGGGGGACCCCCCTCATACCTGCGGCCCG < 41bp 1 0.177923150091764 1 0.0667369663715363 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788047 chr16:15788055 nonsynonymous SNV 0.089 4 29 hm5C_associated_SNPs_39446 0 0 1 0 2 chromatin 1 0.500231647986219 1 0.999536704027562 hm5C_site_38783 DeepMRMD:1;iRNA_m5C:0.999536704027562 38784 chr11 63743727 63743727 1 + G A UCEC 63743738 + 63743718 63743758 41 TCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCT TCCTGCTTCATGACCTTCCTCCTGCCAGCGGGCTGGATCCT < 41bp 1 0.150314487025934 1 0.212983936071396 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743738 chr11:63743727 nonsynonymous SNV 0.005 2 10 hm5C_associated_SNPs_39447 0 0 1 0 1 Ribosome 1 0.500231766934378 1 0.999536466131244 hm5C_site_38784 DeepMRMD:1;iRNA_m5C:0.999536466131244 38785 chr11 63743727 63743727 1 + G A UCEC 63743739 + 63743719 63743759 41 CCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTG CCTGCTTCATGACCTTCCTCCTGCCAGCGGGCTGGATCCTG < 41bp 1 0.44402193590715 1 0.285111010074615 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743739 chr11:63743727 nonsynonymous SNV 0.005 2 9 hm5C_associated_SNPs_39448 0 0 1 0 1 Ribosome 1 0.500231643920178 1 0.999536712159644 hm5C_site_38785 DeepMRMD:1;iRNA_m5C:0.999536712159644 38786 chr14 100934379 100934379 1 + G A UCEC 100934368 + 100934348 100934388 41 TTGCCTGCAGGTATGGAACGCCGTGGACTCCGGGCACTGCC TTGCCTGCAGGTATGGAACGCCGTGGACTCCAGGCACTGCC < 41bp 1 0.215678925567494 1 0.629751086235046 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100934368 chr14:100934379 nonsynonymous SNV 0.099 3 32 hm5C_associated_SNPs_39449 0 0 0 0 1 chromatin 1 0.500231894574099 0.740497827529908 0.999536210851801 hm5C_site_38786 DeepMRMD:0.740497827529908;iRNA_m5C:0.999536210851801 38787 chr5 159344757 159344757 1 + A G UCEC 159344770 + 159344750 159344790 41 GCTGTCAAACTTTTTAAGTTCTCCAGGGAAAAGAAAGCAGC GCTGTCAGACTTTTTAAGTTCTCCAGGGAAAAGAAAGCAGC < 41bp 1 0.629416278458599 1 0.954537034034729 experiment 0.741167443082802 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout ADRA1B ENSG00000170214 CDS Human protein_coding chr5:159344770 chr5:159344757 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_39450 0 0 0 0 0 exosome 1 0.500231643921093 0.090925931930542 0.999536712157814 hm5C_site_38787 DeepMRMD:0.090925931930542;iRNA_m5C:0.999536712157814 38788 chr12 112235978 112235978 1 + C T UCEC 112235998 + 112235978 112236018 41 CGTGGTTACTTCATCCAGCCCACTGTGTTTGGAGATGTGCA TGTGGTTACTTCATCCAGCCCACTGTGTTTGGAGATGTGCA < 41bp 1 0.194681029565728 1 0.071449339389801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112235998 chr12:112235978 nonsynonymous SNV 0.890 2 1 hm5C_associated_SNPs_39451 0 0 1 0 2 chromatin 1 0.500237971387027 1 0.999524057225945 hm5C_site_38788 DeepMRMD:1;iRNA_m5C:0.999524057225945 38789 chr1 44069412 44069412 1 + G A UCEC 44069418 + 44069398 44069438 41 CGGGCCGACGAGGCGCGGCCCAACACCATAGATTTCGGCAA CGGGCCGACGAGGCACGGCCCAACACCATAGATTTCGGCAA < 41bp 1 0.399762512282527 1 0.0552957653999329 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44069418 chr1:44069412 synonymous SNV . 0 15 hm5C_associated_SNPs_39452 0 0 1 0 0 Ribosome 1 0.500231644645943 1 0.999536710708113 hm5C_site_38789 DeepMRMD:1;iRNA_m5C:0.999536710708113 38790 chr5 33466984 33466984 1 + A G UCEC 33466993 + 33466973 33467013 41 TAGGTACGACAACAATTCCACGATGCCAAATTCATGGCAGA TAGGTACGACAGCAATTCCACGATGCCAAATTCATGGCAGA < 41bp 1 0.20535598826906 1 0.201243489980698 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33466993 chr5:33466984 synonymous SNV . 0 12 hm5C_associated_SNPs_39454 0 0 1 0 1 Nucleus 1 0.500231805126426 1 0.999536389747149 hm5C_site_38790 DeepMRMD:1;iRNA_m5C:0.999536389747149 38791 chr2 209189995 209189995 1 + A G UCEC 209190000 + 209189980 209190020 41 GTTTTTGTTTGTAGAACAAACCAAGACACTGATGTTTTTTG GTTTTTGTTTGTAGAGCAAACCAAGACACTGATGTTTTTTG < 41bp 1 0.100658298222141 1 0.174653828144073 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209190000 chr2:209189995 synonymous SNV . 0 16 hm5C_associated_SNPs_39455 0 0 1 0 1 Nucleus 1 0.503230063382735 1 0.993539873234531 hm5C_site_38791 DeepMRMD:1;iRNA_m5C:0.993539873234531 38792 chr2 173352749 173352749 1 + G A UCEC 173352763 + 173352743 173352783 41 TGAACTGCTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA TGAACTACTTTTATCGGTCTCGGGGTAAGTGTTTGTGTTTA < 41bp 1 0.692584506938052 1 0.906514644622803 experiment 0.614830986123896 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173352763 chr2:173352749 synonymous SNV . 0 7 hm5C_associated_SNPs_39456 0 0 1 0 2 Nucleus 1 0.500231643921092 0.186970710754394 0.999536712157815 hm5C_site_38792 DeepMRMD:0.186970710754394;iRNA_m5C:0.999536712157815 38793 chr5 179151676 179151676 1 + G A UCEC 179151661 + 179151641 179151681 41 TTTGGGGAACATTTCAGAAACAGACCAGTGGTATGGAGTAT TTTGGGGAACATTTCAGAAACAGACCAGTGGTATGAAGTAT < 41bp 1 0.225209203776019 1 0.226558208465576 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179151661 chr5:179151676 nonsynonymous SNV 0.912 1 36 hm5C_associated_SNPs_39457 0 0 1 0 1 Nucleus 1 0.500231710471005 1 0.99953657905799 hm5C_site_38793 DeepMRMD:1;iRNA_m5C:0.99953657905799 38794 chr5 179151676 179151676 1 + G A UCEC 179151665 + 179151645 179151685 41 GGGAACATTTCAGAAACAGACCAGTGGTATGGAGTATAAGA GGGAACATTTCAGAAACAGACCAGTGGTATGAAGTATAAGA < 41bp 1 0.205705711306084 1 0.0717135071754456 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179151665 chr5:179151676 nonsynonymous SNV 0.912 1 32 hm5C_associated_SNPs_39458 0 0 1 0 1 Nucleus 1 0.500231642936377 1 0.999536714127245 hm5C_site_38794 DeepMRMD:1;iRNA_m5C:0.999536714127245 38795 chr5 179151676 179151676 1 + G A UCEC 179151689 + 179151669 179151709 41 TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATG TGGTATGAAGTATAAGAAAACTGATGCACCTCAACCGGATG < 41bp 1 0.453344356477707 1 0.364013880491257 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151689 chr5:179151676 nonsynonymous SNV 0.912 1 8 hm5C_associated_SNPs_39459 0 0 1 0 1 Nucleus 1 0.50023164378446 1 0.99953671243108 hm5C_site_38795 DeepMRMD:1;iRNA_m5C:0.99953671243108 38796 chr11 9456541 9456541 1 + C T UCEC 9456531 + 9456511 9456551 41 CAGTTGATACAGACACACTTCTGTCTGACACCAAGTATCTT CAGTTGATACAGACACACTTCTGTCTGACATCAAGTATCTT < 41bp 1 0.124630311832593 1 0.151549518108368 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9456531 chr11:9456541 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_39460 0 0 1 0 2 Cytosol 1 0.50022076445553 1 0.99955847108894 hm5C_site_38796 DeepMRMD:1;iRNA_m5C:0.99955847108894 38797 chr20 62373310 62373310 1 + C T UCEC 62373328 + 62373308 62373348 41 GACCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC GATCTGGCCAGTGACCAGTCCTCTCCGTCCACCCCGTCACC < 41bp 1 0.0965750841542452 1 0.0432239472866058 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62373328 chr20:62373310 synonymous SNV . 0 3 hm5C_associated_SNPs_39461 0 0 1 0 2 Cytosol 1 0.500231624408174 1 0.999536751183652 hm5C_site_38797 DeepMRMD:1;iRNA_m5C:0.999536751183652 38798 chr19 17213054 17213054 1 + A G UCEC 17213070 + 17213050 17213090 41 ATCTACACGTACGCGGGGAGCATCCTGGTGGCCATCAACCC ATCTGCACGTACGCGGGGAGCATCCTGGTGGCCATCAACCC < 41bp 1 0.0621179875360901 1 0.065816342830658 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17213070 chr19:17213054 nonsynonymous SNV 0.995 5 5 hm5C_associated_SNPs_39462 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38798 DeepMRMD:1;iRNA_m5C:0.999536712157815 Multiple complex diseases 38799 chr1 39799719 39799719 1 + G T UCEC 39799715 + 39799695 39799735 41 ACAGTTGTGCAGTCCATTGACAGAGGTCTTTTGGAGAGAGA ACAGTTGTGCAGTCCATTGACAGATGTCTTTTGGAGAGAGA < 41bp 1 0.121627041857052 1 0.647125244140625 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MACF1 ENSG00000127603 CDS Human protein_coding chr1:39799715 chr1:39799719 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_39463 0 0 1 0 0 Endoplasmic reticulum 1 0.500231940270684 0.70574951171875 0.999536119458632 hm5C_site_38799 DeepMRMD:0.70574951171875;iRNA_m5C:0.999536119458632 38800 chr11 10774294 10774294 1 + C A UCEC 10774299 + 10774279 10774319 41 CAGGAACACACACAACTGCACATATGGATTGCTTTGGCGGT CAGGAACACACACAAATGCACATATGGATTGCTTTGGCGGT < 41bp 1 0.0799541728936119 1 0.0257505178451538 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774299 chr11:10774294 nonsynonymous SNV 0.997 2 16 hm5C_associated_SNPs_39464 0 0 1 0 2 Cytosol 1 0.500229564662053 1 0.999540870675894 hm5C_site_38800 DeepMRMD:1;iRNA_m5C:0.999540870675894 38801 chr11 10774294 10774294 1 + C A UCEC 10774310 + 10774290 10774330 41 ACAACTGCACATATGGATTGCTTTGGCGGTCAGTATTCATG ACAAATGCACATATGGATTGCTTTGGCGGTCAGTATTCATG < 41bp 1 0.0848543029941814 1 0.0118987560272217 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTR9 ENSG00000198730 CDS Human protein_coding chr11:10774310 chr11:10774294 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_39465 0 0 1 0 2 Cytosol 1 0.500231643810168 1 0.999536712379663 hm5C_site_38801 DeepMRMD:1;iRNA_m5C:0.999536712379663 38802 chr17 4053193 4053193 1 + G A UCEC 4053212 + 4053192 4053232 41 CGCATCCAGAGCTTTCGTGACCGGGGACTGTTCTGAAGCAG CACATCCAGAGCTTTCGTGACCGGGGACTGTTCTGAAGCAG < 41bp 1 0.615977087127858 1 0.900657534599304 experiment 0.768045825744285 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4053212 chr17:4053193 nonsynonymous SNV 0.942 5 2 hm5C_associated_SNPs_39466 0 0 0 0 1 Ribosome 1 0.500231660366259 0.198684930801392 0.999536679267482 hm5C_site_38802 DeepMRMD:0.198684930801392;iRNA_m5C:0.999536679267482 38803 chr7 130021483 130021483 1 + C T UCEC 130021476 + 130021456 130021496 41 TCTTGTCCTCCCCAGCTGGACTTCTGGCGGGGGCCTGCCCA TCTTGTCCTCCCCAGCTGGACTTCTGGTGGGGGCCTGCCCA < 41bp 1 0.400159612790937 1 0.0716961920261383 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021476 chr7:130021483 nonsynonymous SNV 0.896 3 28 hm5C_associated_SNPs_39467 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_38803 DeepMRMD:1;iRNA_m5C:0.999536712157815 38804 chr7 130021483 130021483 1 + C T UCEC 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCC < 41bp 1 0.125580117659357 1 0.531158030033112 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021483 nonsynonymous SNV 0.896 3 15 hm5C_associated_SNPs_39468 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.937683939933776 0.999536712157815 hm5C_site_38804 DeepMRMD:0.937683939933776;iRNA_m5C:0.999536712157815 38805 chr7 130021483 130021483 1 + C T UCEC 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCA < 41bp 1 0.53577865506807 1 0.35852175951004 experiment 0.928442689863859 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021483 nonsynonymous SNV 0.896 3 14 hm5C_associated_SNPs_39469 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643909337 1 0.999536712181325 hm5C_site_38805 DeepMRMD:1;iRNA_m5C:0.999536712181325 38806 chr7 130021483 130021483 1 + C T UCEC 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCG < 41bp 1 0.311271907979497 1 0.374046921730042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021483 nonsynonymous SNV 0.896 3 11 hm5C_associated_SNPs_39470 0 0 0 0 2 Endoplasmic reticulum 1 0.500231655147847 1 0.999536689704306 hm5C_site_38806 DeepMRMD:1;iRNA_m5C:0.999536689704306 38807 chr7 130021483 130021483 1 + C T UCEC 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCGA < 41bp 1 0.335537932595285 1 0.178649842739105 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021483 nonsynonymous SNV 0.896 3 10 hm5C_associated_SNPs_39471 0 0 0 0 2 Endoplasmic reticulum 1 0.500231638564693 1 0.999536722870614 hm5C_site_38807 DeepMRMD:1;iRNA_m5C:0.999536722870614 38808 chr7 130021483 130021483 1 + C T UCEC 130021497 + 130021477 130021517 41 TTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT TTCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGT < 41bp 1 0.499160573237747 1 0.0657855272293091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021497 chr7:130021483 nonsynonymous SNV 0.896 3 7 hm5C_associated_SNPs_39473 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643909672 1 0.999536712180656 hm5C_site_38808 DeepMRMD:1;iRNA_m5C:0.999536712180656 38809 chr7 130021483 130021483 1 + C T UCEC 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGTGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC < 41bp 1 0.653251029266563 1 0.132432341575623 experiment 0.693497941466873 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021483 nonsynonymous SNV 0.896 3 6 hm5C_associated_SNPs_39474 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164391936 1 0.999536712161279 hm5C_site_38809 DeepMRMD:1;iRNA_m5C:0.999536712161279 38810 chr7 130021483 130021483 1 + C T UCEC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT TGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.209915998317684 1 0.103125393390656 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021483 nonsynonymous SNV 0.896 3 1 hm5C_associated_SNPs_39475 0 0 0 0 2 Endoplasmic reticulum 1 0.500232479194069 1 0.999535041611861 hm5C_site_38810 DeepMRMD:1;iRNA_m5C:0.999535041611861 38811 chr9 96420503 96420503 1 + G A UCEC 96420497 + 96420477 96420517 41 AAAATTCTCAATGGTGCTTTCCGATCGTGGACGAAGAAGCA AAAATTCTCAATGGTGCTTTCCGATCATGGACGAAGAAGCA < 41bp 1 0.070917336261729 1 0.529219090938568 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96420497 chr9:96420503 synonymous SNV . 0 27 hm5C_associated_SNPs_39476 0 0 1 0 2 chromatin 1 0.5002316296668 0.941561818122864 0.9995367406664 hm5C_site_38811 DeepMRMD:0.941561818122864;iRNA_m5C:0.9995367406664 38812 chr19 54377323 54377323 1 + G T UCEC 54377326 + 54377306 54377346 41 CTGCTGAAGGTGCTGGAGACCTTCGTTGCCTGCATCATCTT CTGCTGAAGGTGCTGGATACCTTCGTTGCCTGCATCATCTT < 41bp 1 0.524548617662028 1 0.41716143488884 experiment 0.950902764675945 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYADM ENSG00000179820 CDS Human protein_coding chr19:54377326 chr19:54377323 nonsynonymous SNV 0.997 4 18 hm5C_associated_SNPs_39477 0 0 1 0 0 Nucleus 1 0.500231643913698 1 0.999536712172605 hm5C_site_38812 DeepMRMD:1;iRNA_m5C:0.999536712172605 38813 chr7 4260897 4260897 1 + C A UCEC 4260905 + 4260885 4260925 41 CCTAGAGATGTCCTGGTCACCAAGTCCGCCTCTGAACTGAC CCTAGAGATGTCATGGTCACCAAGTCCGCCTCTGAACTGAC < 41bp 1 0.205721036666859 1 0.528329432010651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4260905 chr7:4260897 nonsynonymous SNV 0.500 0 13 hm5C_associated_SNPs_39478 0 0 0 0 2 cytosol 1 0.50023164451035 0.943341135978698 0.999536710979299 hm5C_site_38813 DeepMRMD:0.943341135978698;iRNA_m5C:0.999536710979299 38814 chr4 1332373 1332373 1 + A G UCEC 1332384 + 1332364 1332404 41 CCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAA CCGCCCATGGTGCTGCCCAACGGCTACGTCTACGGCTACAA < 41bp 1 0.665100428933961 1 0.409021198749542 experiment 0.669799142132079 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAEA ENSG00000090316 CDS Human protein_coding chr4:1332384 chr4:1332373 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_39479 0 0 1 3 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38814 DeepMRMD:1;iRNA_m5C:0.999536712157815 38815 chr2 238976793 238976793 1 + C A UCEC 238976802 + 238976782 238976822 41 AATCTTCACTTCCGGGGGCACTGAGGTAAAGCTTCTGAACA AATCTTCACTTACGGGGGCACTGAGGTAAAGCTTCTGAACA < 41bp 1 0.355545893536814 1 0.154011338949203 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCLY ENSG00000132330 CDS Human protein_coding chr2:238976802 chr2:238976793 nonsynonymous SNV 0.600 5 12 hm5C_associated_SNPs_39481 0 0 1 0 2 Ribosome 1 0.500231644131698 1 0.999536711736603 hm5C_site_38815 DeepMRMD:1;iRNA_m5C:0.999536711736603 38816 chr4 113189384 113189384 1 + A C UCEC 113189402 + 113189382 113189422 41 GAAGACTGGAAGTAATCCTACATCAGCCTCTGATGATTCCA GACGACTGGAAGTAATCCTACATCAGCCTCTGATGATTCCA < 41bp 1 0.390898365941388 1 0.070795089006424 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP1AR ENSG00000138660 CDS Human protein_coding chr4:113189402 chr4:113189384 nonsynonymous SNV 0.964 2 3 hm5C_associated_SNPs_39482 0 0 1 0 1 Ribosome 1 0.500231737697416 1 0.999536524605168 hm5C_site_38816 DeepMRMD:1;iRNA_m5C:0.999536524605168 38817 chr10 75506643 75506643 1 + C T UCEC 75506660 + 75506640 75506680 41 AGCCCATCTACCCAGGGTATCATCAGTCCAGCTATGGTGGG AGCTCATCTACCCAGGGTATCATCAGTCCAGCTATGGTGGG < 41bp 1 0.607321903861804 1 0.275574505329132 experiment 0.785356192276393 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75506660 chr10:75506643 nonsynonymous SNV 0.894 3 4 hm5C_associated_SNPs_39483 0 0 1 0 1 Nucleus 1 0.500231644143198 1 0.999536711713603 hm5C_site_38817 DeepMRMD:1;iRNA_m5C:0.999536711713603 38818 chr5 112868663 112868663 1 + G A UCEC 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CACTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.50189234308597 1 0.0923890769481659 experiment 0.996215313828059 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868663 nonsynonymous SNV 0.991 1 2 hm5C_associated_SNPs_39485 0 0 1 0 2 Cytosol 1 0.500231805472675 1 0.99953638905465 hm5C_site_38818 DeepMRMD:1;iRNA_m5C:0.99953638905465 Asthma (childhood onset) 38819 chr5 112868663 112868663 1 + G A UCEC 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT ACTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.611604778415665 1 0.714749813079834 experiment 0.776790443168669 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868663 nonsynonymous SNV 0.991 1 1 hm5C_associated_SNPs_39486 0 0 1 0 2 Cytosol 1 0.500231644316255 0.570500373840332 0.999536711367491 hm5C_site_38819 DeepMRMD:0.570500373840332;iRNA_m5C:0.999536711367491 38820 chr20 2635125 2635125 1 + C A UCEC 2635143 + 2635123 2635163 41 TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA TAATCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA < 41bp 1 0.554773737911943 1 0.151892215013504 experiment 0.890452524176114 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635143 chr20:2635125 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_39488 0 0 1 1 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38820 DeepMRMD:1;iRNA_m5C:0.999536712157815 38821 chr6 138727146 138727146 1 + G A UCEC 138727165 + 138727145 138727185 41 CGTGGAGCCTGGTTCAGGTCCTTTTAGTGAGTCTACCATTA CATGGAGCCTGGTTCAGGTCCTTTTAGTGAGTCTACCATTA < 41bp 1 0.0804513566133072 1 0.01893350481987 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138727165 chr6:138727146 nonsynonymous SNV 0.991 2 2 hm5C_associated_SNPs_39489 0 0 1 0 1 Cytosol 1 0.500231643920467 1 0.999536712159066 hm5C_site_38821 DeepMRMD:1;iRNA_m5C:0.999536712159066 38822 chr12 95897859 95897859 1 + C T UCEC 95897862 + 95897842 95897882 41 GTGCTGGAATTGATGTTCGTCTGTGTGATGTTGGTGAGGCC GTGCTGGAATTGATGTTTGTCTGTGTGATGTTGGTGAGGCC < 41bp 1 0.550104769133932 1 0.656402468681335 experiment 0.899790461732136 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95897862 chr12:95897859 nonsynonymous SNV 0.992 4 18 hm5C_associated_SNPs_39490 0 0 1 2 1 Ribosome 1 0.500319045379508 0.68719506263733 0.999361909240984 hm5C_site_38822 DeepMRMD:0.68719506263733;iRNA_m5C:0.999361909240984 38823 chr9 90261452 90261452 1 + C T UCEC 90261459 + 90261439 90261479 41 ATTAAAAGAGGCTCGAGAATCGATGTCCAGGATAAGGTCAT ATTAAAAGAGGCTTGAGAATCGATGTCCAGGATAAGGTCAT < 41bp 1 0.177316428003596 1 0.479404389858246 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90261459 chr9:90261452 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_39491 0 0 0 0 2 Ribosome 1 0.500231643926254 1 0.999536712147491 hm5C_site_38823 DeepMRMD:1;iRNA_m5C:0.999536712147491 38824 chr14 68042173 68042173 1 + G A UCEC 68042177 + 68042157 68042197 41 ATCTTCTACTACTATCGGAGCCATGAGGACAAGGTACTTCT ATCTTCTACTACTATCAGAGCCATGAGGACAAGGTACTTCT < 41bp 1 0.0473085443683196 1 0.0995316207408905 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042177 chr14:68042173 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_39492 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164044663 1 0.99953671910674 hm5C_site_38824 DeepMRMD:1;iRNA_m5C:0.99953671910674 38825 chr6 3015784 3015784 1 + C T UCEC 3015789 + 3015769 3015809 41 GCTGTACTGGTTCAGCGTGCCAGCCATCCTGAAGGGCTGGA GCTGTACTGGTTCAGTGTGCCAGCCATCCTGAAGGGCTGGA < 41bp 1 0.432955098077166 1 0.285855293273926 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NQO2 ENSG00000124588 CDS Human protein_coding chr6:3015789 chr6:3015784 synonymous SNV . 0 16 hm5C_associated_SNPs_39493 0 0 1 0 2 Ribosome 1 0.500231643923339 1 0.999536712153322 hm5C_site_38825 DeepMRMD:1;iRNA_m5C:0.999536712153322 38826 chr16 3707751 3707751 1 + C T UCEC 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CGAGGTGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.648786366873135 1 0.534785211086273 experiment 0.702427266253731 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707751 synonymous SNV . 0 6 hm5C_associated_SNPs_39495 0 0 0 0 2 Cytosol 1 0.500231643927131 0.930429577827454 0.999536712145737 hm5C_site_38826 DeepMRMD:0.930429577827454;iRNA_m5C:0.999536712145737 38827 chr10 115485138 115485138 1 + A G UCEC 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATGCAAATGCCGCCTGCTTCGCCTGCATCC < 41bp 1 0.294518568555785 1 0.113142400979996 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485138 nonsynonymous SNV 0.969 1 14 hm5C_associated_SNPs_39496 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38827 DeepMRMD:1;iRNA_m5C:0.999536712157815 38828 chr3 40503481 40503481 1 + C A UCEC 40503488 + 40503468 40503508 41 AAAGGCAGCTCTCCTGAAAGCTTCTCCCAAAAAAGCACCTG AAAGGCAGCTCTCATGAAAGCTTCTCCCAAAAAAGCACCTG < 41bp 1 0.205928527450293 1 0.138281315565109 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40503488 chr3:40503481 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_39497 0 0 0 0 1 Ribosome 1 0.500231643895353 1 0.999536712209294 hm5C_site_38828 DeepMRMD:1;iRNA_m5C:0.999536712209294 38829 chr11 65267975 65267975 1 + G T UCEC 65267961 + 65267941 65267981 41 ATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCAGCAGTTC ATGAAGCTAGGACTGAGGAGCAAGCGAGCAAGCATCAGTTC < 41bp 1 0.629412906272839 1 0.354934632778168 experiment 0.741174187454322 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267961 chr11:65267975 . . 0 35 hm5C_associated_SNPs_39501 0 0 1 1 0 unknown 1 0.500231643920776 1 0.999536712158447 hm5C_site_38829 DeepMRMD:1;iRNA_m5C:0.999536712158447 38830 chr11 65267975 65267975 1 + G T UCEC 65267973 + 65267953 65267993 41 CTGAGGAGCAAGCGAGCAAGCAGCAGTTCGTGGTGAAGATA CTGAGGAGCAAGCGAGCAAGCATCAGTTCGTGGTGAAGATA < 41bp 1 0.662307116476437 1 0.429151386022568 experiment 0.675385767047126 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267973 chr11:65267975 . . 0 23 hm5C_associated_SNPs_39502 0 0 1 1 0 unknown 1 0.500231644836333 1 0.999536710327333 hm5C_site_38830 DeepMRMD:1;iRNA_m5C:0.999536710327333 38831 chr7 150769155 150769155 1 + A G UCEC 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT TCCCGCTTCGCCCAGGAGATCTTCGCCTTCTTGATCTCACT < 41bp 1 0.0836943010483205 1 0.0537152588367462 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769155 nonsynonymous SNV 1.000 5 10 hm5C_associated_SNPs_39503 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_38831 DeepMRMD:1;iRNA_m5C:0.999536712157813 38832 chr7 101925148 101925148 1 + C T UCEC 101925146 + 101925126 101925166 41 TCCCAGGGGCGTCTGGTTCTCTCCAACAAGATGGCGCGCAC TCCCAGGGGCGTCTGGTTCTCTTCAACAAGATGGCGCGCAC < 41bp 1 0.621020183791068 1 0.685818672180176 experiment 0.757959632417864 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101925146 chr7:101925148 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_39504 0 0 0 1 2 Exosome 1 0.500231643920802 0.628362655639648 0.999536712158397 hm5C_site_38832 DeepMRMD:0.628362655639648;iRNA_m5C:0.999536712158397 38833 chr2 219269098 219269098 1 + C T UCEC 219269106 + 219269086 219269126 41 GAGCAACTCAGCCGTGTGGACGACGTGTACTCAGTGCTCAG GAGCAACTCAGCTGTGTGGACGACGTGTACTCAGTGCTCAG < 41bp 1 0.599249308258323 1 0.203542053699493 experiment 0.801501383483354 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219269106 chr2:219269098 nonsynonymous SNV 0.998 3 13 hm5C_associated_SNPs_39505 0 0 1 0 1 Cytosol 1 0.500231641933422 1 0.999536716133157 hm5C_site_38833 DeepMRMD:1;iRNA_m5C:0.999536716133157 38834 chr8 6302721 6302721 1 + G A UCEC 6302737 + 6302717 6302757 41 GGCCGTGCAACTTCGAGTTGCGTGACTTCTGCCCCTGAAGA GGCCATGCAACTTCGAGTTGCGTGACTTCTGCCCCTGAAGA < 41bp 1 0.565560479782646 1 0.138455152511597 experiment 0.868879040434708 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCPH1 ENSG00000147316 CDS Human protein_coding chr8:6302737 chr8:6302721 nonsynonymous SNV 0.000 0 5 hm5C_associated_SNPs_39506 0 0 1 0 0 Nucleus 1 0.500231643858121 1 0.999536712283759 hm5C_site_38834 DeepMRMD:1;iRNA_m5C:0.999536712283759 38835 chr2 231931701 231931701 1 + G A UCEC 231931688 + 231931668 231931708 41 TGCCTGAAGGAGAAAAAAAACCAATTGACCAGAGATTGGAA TGCCTGAAGGAGAAAAAAAACCAATTGACCAGAAATTGGAA < 41bp 1 0.166113249478852 1 0.179033100605011 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931688 chr2:231931701 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_39507 0 0 1 0 1 Nucleus 1 0.500231643921138 1 0.999536712157725 hm5C_site_38835 DeepMRMD:1;iRNA_m5C:0.999536712157725 38836 chr2 231931701 231931701 1 + G A UCEC 231931696 + 231931676 231931716 41 GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATCGT GGAGAAAAAAAACCAATTGACCAGAAATTGGAAGGCATCGT < 41bp 1 0.532981947909068 1 0.0589966475963593 experiment 0.934036104181864 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931696 chr2:231931701 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_39508 0 0 1 0 1 Nucleus 1 0.50023164391943 1 0.99953671216114 hm5C_site_38836 DeepMRMD:1;iRNA_m5C:0.99953671216114 38837 chr20 43052669 43052669 1 + C T UCEC 43052674 + 43052654 43052694 41 GTAGATGCCAAGGGGCTGAGCGATCCAGGGAAGATCAAGCG GTAGATGCCAAGGGGTTGAGCGATCCAGGGAAGATCAAGCG < 41bp 1 0.169677987506017 1 0.687112629413605 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNF4A ENSG00000101076 CDS Human protein_coding chr20:43052674 chr20:43052669 synonymous SNV . 0 16 hm5C_associated_SNPs_39509 0 0 1 0 1 Ribosome 1 0.500230623112802 0.62577474117279 0.999538753774396 hm5C_site_38837 DeepMRMD:0.62577474117279;iRNA_m5C:0.999538753774396 38838 chr12 88439535 88439535 1 + A G UCEC 88439525 + 88439505 88439545 41 TTAGAACAAACACTGGAACTCATAGGAACAAATATCAATGG TTAGAACAAACACTGGAACTCATAGGAACAGATATCAATGG < 41bp 1 0.477597656908604 1 0.336816757917404 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf29 ENSG00000133641 CDS Human protein_coding chr12:88439525 chr12:88439535 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_39510 0 0 1 1 1 Cytosol 1 0.500231643919379 1 0.999536712161243 hm5C_site_38838 DeepMRMD:1;iRNA_m5C:0.999536712161243 38839 chr4 37857255 37857255 1 + A G UCEC 37857261 + 37857241 37857281 41 AGTAAAAGCAGCCAAATGATCACCTTCACCTTTGCTAATGG AGTAAAAGCAGCCAGATGATCACCTTCACCTTTGCTAATGG < 41bp 1 0.665394468921285 1 0.226862341165543 experiment 0.66921106215743 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PGM2 ENSG00000169299 CDS Human protein_coding chr4:37857261 chr4:37857255 synonymous SNV . 0 15 hm5C_associated_SNPs_39511 0 0 0 0 1 Nucleus 1 0.500231644732305 1 0.999536710535389 hm5C_site_38839 DeepMRMD:1;iRNA_m5C:0.999536710535389 38840 chr10 70100940 70100940 1 + C T UCEC 70100936 + 70100916 70100956 41 TTTCCTTTTATTTAGTTCTTCTCACCACTAAATCCAATACG TTTCCTTTTATTTAGTTCTTCTCATCACTAAATCCAATACG < 41bp 1 0.18462297344829 1 0.0835807323455811 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPH3 ENSG00000096746;ENSG00000204130 CDS Human other chr10:70100936 chr10:70100940 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_39512 0 0 1 0 1 Cytosol 1 0.500231557005194 1 0.999536885989613 hm5C_site_38840 DeepMRMD:1;iRNA_m5C:0.999536885989613 38841 chr11 557915 557915 1 + C T UCEC 557932 - 557912 557952 41 TGCCTCCTGCAGCTGGCCCGCTCCTCGTGGGTGGGCCGCAT TGCCTCCTGCAGCTGGCCCGCTCCTCGTGGGTGGGCCACAT < 41bp 1 0.27674795980839 1 0.419878095388412 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:557932 chr11:557915 nonsynonymous SNV 0.027 3 38 hm5C_associated_SNPs_39513 0 0 1 0 1 chromatin 1 0.500231643923595 1 0.999536712152811 hm5C_site_38841 DeepMRMD:1;iRNA_m5C:0.999536712152811 38842 chr10 70962725 70962725 1 + C A UCEC 70962706 + 70962686 70962726 41 AAATTTTCTGCAGAGTTGATCCAGCATATTCCACTAAGTCT AAATTTTCTGCAGAGTTGATCCAGCATATTCCACTAAGTAT < 41bp 1 0.152140833672211 1 0.427017331123352 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70962706 chr10:70962725 nonsynonymous SNV 0.996 4 40 hm5C_associated_SNPs_39514 0 0 1 0 1 Cytosol 1 0.50023070671745 1 0.999538586565099 hm5C_site_38842 DeepMRMD:1;iRNA_m5C:0.999538586565099 38843 chr19 50983465 50983465 1 + T C UCEC 50983456 + 50983436 50983476 41 GGAAGCTGGTGGCTATGTCTCCTCCTTTGTCCCTGCGGTGA GGAAGCTGGTGGCTATGTCTCCTCCTTTGCCCCTGCGGTGA < 41bp 1 0.149215245435384 1 0.34333074092865 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983456 chr19:50983465 nonsynonymous SNV 0.580 4 30 hm5C_associated_SNPs_39515 0 0 1 0 2 Cytosol 1 0.500231669388334 1 0.999536661223331 hm5C_site_38843 DeepMRMD:1;iRNA_m5C:0.999536661223331 38844 chr14 45620662 45620662 1 + A G UCEC 45620670 + 45620650 45620690 41 AAGGGATATCCCAAATCTAACAAAATATCAGATAATTCTGG AAGGGATATCCCGAATCTAACAAAATATCAGATAATTCTGG < 41bp 1 0.443167667794226 1 0.728365421295166 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FANCM ENSG00000187790 CDS Human protein_coding chr14:45620670 chr14:45620662 synonymous SNV . 0 13 hm5C_associated_SNPs_39517 0 0 1 0 2 chromatin 1 0.500231643916543 0.543269157409668 0.999536712166914 hm5C_site_38844 DeepMRMD:0.543269157409668;iRNA_m5C:0.999536712166914 38845 chr9 35733461 35733461 1 + T G UCEC 35733471 + 35733451 35733491 41 TTATTCTGCCTGAGACACTTCCTCTCACTAAGGTAAGACTC TTATTCTGCCGGAGACACTTCCTCTCACTAAGGTAAGACTC < 41bp 1 0.0441546115907663 1 0.207539737224579 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733471 chr9:35733461 synonymous SNV . 0 11 hm5C_associated_SNPs_39518 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_38845 DeepMRMD:1;iRNA_m5C:0.999536712157815 38846 chr19 54969670 54969670 1 + G A UCEC 54969650 + 54969630 54969670 41 ATGTCTGGCTACCTCGTGGACAAGTTTGCAGATCGGGAGCG ATGTCTGGCTACCTCGTGGACAAGTTTGCAGATCGGGAGCA < 41bp 1 0.411630550777961 1 0.218776881694794 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969650 chr19:54969670 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_39519 0 0 1 0 1 chromatin 1 0.500231643921121 1 0.999536712157758 hm5C_site_38846 DeepMRMD:1;iRNA_m5C:0.999536712157758 38847 chr19 54969670 54969670 1 + G A UCEC 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGCACAAGGTCGCCCTCAAGGCCATGATCAAAAC < 41bp 1 0.12431812035585 1 0.172753095626831 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969670 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_39520 0 0 1 0 1 chromatin 1 0.500231629548064 1 0.999536740903872 hm5C_site_38847 DeepMRMD:1;iRNA_m5C:0.999536740903872 38848 chr12 32138415 32138415 1 + T G UCEC 32138422 + 32138402 32138442 41 TCTAAAGAATCATTAAATGGCTTGACAAGCCATGGTAAAAA TCTAAAGAATCATGAAATGGCTTGACAAGCCATGGTAAAAA < 41bp 1 0.510998314979623 1 0.118297010660172 experiment 0.978003370040754 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA1551 ENSG00000174718 CDS Human protein_coding chr12:32138422 chr12:32138415 stopgain 0.067 0 14 hm5C_associated_SNPs_39521 0 0 0 0 0 Cytosol 1 0.500231643961017 1 0.999536712077966 hm5C_site_38848 DeepMRMD:1;iRNA_m5C:0.999536712077966 38849 chr13 24858308 24858308 1 + G A UCEC 24858291 + 24858271 24858311 41 AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAATGG < 41bp 1 0.147419914725411 1 0.193182200193405 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858291 chr13:24858308 nonsynonymous SNV 0.763 0 38 hm5C_associated_SNPs_39522 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38849 DeepMRMD:1;iRNA_m5C:0.999536712157815 38850 chr3 126707694 126707694 1 + G A UCEC 126707684 + 126707664 126707704 41 GAACCTGACACTGCTGCGGGCCCACGTCACGGGCCCTGTGG GAACCTGACACTGCTGCGGGCCCACGTCACAGGCCCTGTGG < 41bp 1 0.0433796838772063 1 0.0885952711105347 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707684 chr3:126707694 synonymous SNV . 0 31 hm5C_associated_SNPs_39523 0 0 0 0 0 Ribosome 1 0.500231644531509 1 0.999536710936981 hm5C_site_38850 DeepMRMD:1;iRNA_m5C:0.999536710936981 38851 chr3 126707694 126707694 1 + G A UCEC 126707685 + 126707665 126707705 41 AACCTGACACTGCTGCGGGCCCACGTCACGGGCCCTGTGGA AACCTGACACTGCTGCGGGCCCACGTCACAGGCCCTGTGGA < 41bp 1 0.0524694432325978 1 0.236209809780121 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707685 chr3:126707694 synonymous SNV . 0 30 hm5C_associated_SNPs_39524 0 0 0 0 0 Ribosome 1 0.500231640541933 1 0.999536718916133 hm5C_site_38851 DeepMRMD:1;iRNA_m5C:0.999536718916133 38852 chr3 126707694 126707694 1 + G A UCEC 126707686 + 126707666 126707706 41 ACCTGACACTGCTGCGGGCCCACGTCACGGGCCCTGTGGAG ACCTGACACTGCTGCGGGCCCACGTCACAGGCCCTGTGGAG < 41bp 1 0.428441623301581 1 0.479172945022583 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707686 chr3:126707694 synonymous SNV . 0 29 hm5C_associated_SNPs_39525 0 0 0 0 0 Ribosome 1 0.500231644095749 1 0.999536711808501 hm5C_site_38852 DeepMRMD:1;iRNA_m5C:0.999536711808501 38853 chr3 126707694 126707694 1 + G A UCEC 126707697 + 126707677 126707717 41 CTGCGGGCCCACGTCACGGGCCCTGTGGAGGACAACGAGAA CTGCGGGCCCACGTCACAGGCCCTGTGGAGGACAACGAGAA < 41bp 1 0.066960751902625 1 0.0958333313465118 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707697 chr3:126707694 synonymous SNV . 0 18 hm5C_associated_SNPs_39526 0 0 0 0 0 Ribosome 1 0.500231634859904 1 0.999536730280192 hm5C_site_38853 DeepMRMD:1;iRNA_m5C:0.999536730280192 38854 chr3 126707694 126707694 1 + G A UCEC 126707698 + 126707678 126707718 41 TGCGGGCCCACGTCACGGGCCCTGTGGAGGACAACGAGAAG TGCGGGCCCACGTCACAGGCCCTGTGGAGGACAACGAGAAG < 41bp 1 0.0321880520754908 1 0.0641814768314362 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707698 chr3:126707694 synonymous SNV . 0 17 hm5C_associated_SNPs_39527 0 0 0 0 0 Ribosome 1 0.500231665846208 1 0.999536668307583 hm5C_site_38854 DeepMRMD:1;iRNA_m5C:0.999536668307583 38855 chr3 126707694 126707694 1 + G A UCEC 126707699 + 126707679 126707719 41 GCGGGCCCACGTCACGGGCCCTGTGGAGGACAACGAGAAGT GCGGGCCCACGTCACAGGCCCTGTGGAGGACAACGAGAAGT < 41bp 1 0.144761131759756 1 0.118325293064117 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707699 chr3:126707694 synonymous SNV . 0 16 hm5C_associated_SNPs_39528 0 0 0 0 0 Ribosome 1 0.500231513926458 1 0.999536972147083 hm5C_site_38855 DeepMRMD:1;iRNA_m5C:0.999536972147083 38856 chr4 126412261 126412261 1 + C T UCEC 126412244 + 126412224 126412264 41 GGGAAGGAGAAGCAAGAGTCCTCAGGCCATGGCATCACATG GGGAAGGAGAAGCAAGAGTCCTCAGGCCATGGCATCATATG < 41bp 1 0.233457303563147 1 0.579979777336121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126412244 chr4:126412261 nonsynonymous SNV 0.107 0 38 hm5C_associated_SNPs_39529 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643927018 0.840040445327758 0.999536712145965 hm5C_site_38856 DeepMRMD:0.840040445327758;iRNA_m5C:0.999536712145965 38857 chrX 56592144 56592144 1 + C T UCEC 56592147 + 56592127 56592167 41 AGGAGGCGACATCAATGCAGCCATTGAAAGGCTGCTGGGCT AGGAGGCGACATCAATGTAGCCATTGAAAGGCTGCTGGGCT < 41bp 1 0.0815631775095636 1 0.173057228326797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56592147 chrX:56592144 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_39530 0 0 1 0 0 nucleus 1 0.500231643921094 1 0.999536712157813 hm5C_site_38857 DeepMRMD:1;iRNA_m5C:0.999536712157813 38858 chr10 60580151 60580151 1 + C T UCEC 60580149 + 60580129 60580169 41 ATCGATCTTCAGACATTCCTCACTCTCACAGATCAGGATCT ATCGATCTTCAGACATTCCTCATTCTCACAGATCAGGATCT < 41bp 1 0.0302411117407745 1 0.120138823986053 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60580149 chr10:60580151 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_39531 0 0 1 0 2 nucleus 1 0.500232007045036 1 0.999535985909927 hm5C_site_38858 DeepMRMD:1;iRNA_m5C:0.999535985909927 38859 chr12 58114267 58114267 1 + C T UCEC 58114286 + 58114266 58114306 41 ACGAGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAG ATGAGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTAAG < 41bp 1 0.329730292759288 1 0.0513812005519867 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58114286 chr12:58114267 nonsynonymous SNV 0.868 4 2 hm5C_associated_SNPs_39532 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38859 DeepMRMD:1;iRNA_m5C:0.999536712157815 38860 chr1 32628007 32628007 1 + G A UCEC 32628006 + 32627986 32628026 41 TCTCGCCTACTCTTCAGCAGCGACTCGGACTTGCTGGCAGA TCTCGCCTACTCTTCAGCAGCAACTCGGACTTGCTGGCAGA < 41bp 1 0.252299344619857 1 0.0755244195461273 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32628006 chr1:32628007 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_39533 0 0 1 0 1 Cytosol 1 0.50023164391848 1 0.99953671216304 hm5C_site_38860 DeepMRMD:1;iRNA_m5C:0.99953671216304 38861 chr6 32945654 32945654 1 + G T UCEC 32945671 + 32945651 32945691 41 GAGGAAAGTAGCAGTGAGAGCTCCTCTGAGGAAGAGGAGGA GAGTAAAGTAGCAGTGAGAGCTCCTCTGAGGAAGAGGAGGA < 41bp 1 0.444459356358452 1 0.59812718629837 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32945671 chr6:32945654 stopgain 0.999 1 4 hm5C_associated_SNPs_39534 0 0 1 0 0 Cytosol 1 0.50023164392099 0.80374562740326 0.999536712158019 hm5C_site_38861 DeepMRMD:0.80374562740326;iRNA_m5C:0.999536712158019 38862 chr11 65269973 65269973 1 + T G UCEC 65269963 + 65269943 65269983 41 AAACAAGATGTTAAGGTATGCTTCAAAAATTTTGTAAATTG AAACAAGATGTTAAGGTATGCTTCAAAAATGTTGTAAATTG < 41bp 1 0.256600898482403 1 0.240130007266998 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269963 chr11:65269973 . . 0 31 hm5C_associated_SNPs_39535 0 0 1 0 0 unknown 1 0.500231292709698 1 0.999537414580603 hm5C_site_38862 DeepMRMD:1;iRNA_m5C:0.999537414580603 38863 chrX 24073098 24073098 1 + G T UCEC 24073094 + 24073074 24073114 41 TCTTTTGGCAACATGGCGGGCGGAGAAGCTGGAGTGACTCT TCTTTTGGCAACATGGCGGGCGGATAAGCTGGAGTGACTCT < 41bp 1 0.459091856506104 1 0.362345695495605 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2S3 ENSG00000130741 CDS Human protein_coding chrX:24073094 chrX:24073098 stopgain 0.191 1 25 hm5C_associated_SNPs_39536 0 0 1 0 1 Cytosol 1 0.500231643921012 1 0.999536712157975 hm5C_site_38863 DeepMRMD:1;iRNA_m5C:0.999536712157975 38864 chr3 101445472 101445472 1 + G A UCEC 101445461 + 101445441 101445481 41 CAGTGGTCAATTGGTCAGGACAGGGACTACAGAAATTAGGT CAGTGGTCAATTGGTCAGGACAGGGACTACAAAAATTAGGT < 41bp 1 0.383446785655672 1 0.439141929149628 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP97 ENSG00000182504 CDS Human protein_coding chr3:101445461 chr3:101445472 synonymous SNV . 0 32 hm5C_associated_SNPs_39537 0 0 1 0 1 Cytosol 1 0.500231643921088 1 0.999536712157823 hm5C_site_38864 DeepMRMD:1;iRNA_m5C:0.999536712157823 38865 chr2 184023066 184023066 1 + G A UCEC 184023063 + 184023043 184023083 41 TTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAG TTATCAATCTAAACTGCAGGCTCAGAAAGCCTTAAGCAAAG < 41bp 1 0.470724402200907 1 0.15846574306488 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP35 ENSG00000163002 CDS Human protein_coding chr2:184023063 chr2:184023066 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_39538 0 0 1 1 2 chromatin 1 0.500231643921025 1 0.999536712157949 hm5C_site_38865 DeepMRMD:1;iRNA_m5C:0.999536712157949 38866 chr14 50789382 50789382 1 + T C UCEC 50789391 + 50789371 50789411 41 AAATACAAGATTCAGGCGATCGACGCCACCGACTCTTGTAT AAATACAAGATCCAGGCGATCGACGCCACCGACTCTTGTAT < 41bp 1 0.664384885212911 1 0.547669291496277 experiment 0.671230229574179 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789391 chr14:50789382 synonymous SNV . 0 12 hm5C_associated_SNPs_39539 0 0 1 0 1 Cytosol 1 0.50023186091462 0.904661417007446 0.99953627817076 hm5C_site_38866 DeepMRMD:0.904661417007446;iRNA_m5C:0.99953627817076 38867 chr14 50789382 50789382 1 + T C UCEC 50789396 + 50789376 50789416 41 CAAGATTCAGGCGATCGACGCCACCGACTCTTGTATCATGA CAAGATCCAGGCGATCGACGCCACCGACTCTTGTATCATGA < 41bp 1 0.0928311689650026 1 0.128198176622391 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP5S ENSG00000125375 CDS Human protein_coding chr14:50789396 chr14:50789382 synonymous SNV . 0 7 hm5C_associated_SNPs_39540 0 0 1 0 1 Cytosol 1 0.500231644122092 1 0.999536711755816 hm5C_site_38867 DeepMRMD:1;iRNA_m5C:0.999536711755816 38868 chr20 25397763 25397763 1 + G A UCEC 25397762 + 25397742 25397782 41 ATGAAGCAAAGTCAGGTGGACGAAGTGATTTGATACCAACT ATGAAGCAAAGTCAGGTGGACAAAGTGATTTGATACCAACT < 41bp 1 0.266699027501813 1 0.526736557483673 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GINS1 ENSG00000101003 CDS Human protein_coding chr20:25397762 chr20:25397763 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_39541 0 0 1 0 2 Ribosome 1 0.500231643921093 0.946526885032654 0.999536712157815 hm5C_site_38868 DeepMRMD:0.946526885032654;iRNA_m5C:0.999536712157815 38869 chr14 56079160 56079160 1 + G T UCEC 56079153 + 56079133 56079173 41 CCTGTGCTTGAAGAGCAGGTCATCAAAGAAAGTGACGCATC CCTGTGCTTGAAGAGCAGGTCATCAAATAAAGTGACGCATC < 41bp 1 0.564531711452478 1 0.0811395645141602 experiment 0.870936577095043 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56079153 chr14:56079160 stopgain 0.997 1 28 hm5C_associated_SNPs_39542 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643923795 1 0.99953671215241 hm5C_site_38869 DeepMRMD:1;iRNA_m5C:0.99953671215241 38870 chr5 56545306 56545306 1 + G A UCEC 56545303 + 56545283 56545323 41 GCCTCGTCTAACCAAACTGACACGAATGCGCACTGATAAGA GCCTCGTCTAACCAAACTGACACAAATGCGCACTGATAAGA < 41bp 1 0.688210039072208 1 0.138661891222 experiment 0.623579921855584 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56545303 chr5:56545306 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_39543 0 0 1 3 2 Ribosome 1 0.500231639214047 1 0.999536721571906 hm5C_site_38870 DeepMRMD:1;iRNA_m5C:0.999536721571906 38871 chr3 8607253 8607253 1 + T G UCEC 8607252 + 8607232 8607272 41 GAGCCGCTGGTGGACCTCATCTACTTCTGGAAGGATGGTGC GAGCCGCTGGTGGACCTCATCGACTTCTGGAAGGATGGTGC < 41bp 1 0.658162253641933 1 0.775054335594177 experiment 0.683675492716135 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8607252 chr3:8607253 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_39544 0 0 1 0 1 exosome 1 0.500231650429944 0.449891328811646 0.999536699140113 hm5C_site_38871 DeepMRMD:0.449891328811646;iRNA_m5C:0.999536699140113 38872 chrX 151806780 151806780 1 + G A UCEC 151806795 + 151806775 151806815 41 TGCCCGAAGTCGTCCTGAACCTCTTCAACTGGTAAGCGGGC TGCCCAAAGTCGTCCTGAACCTCTTCAACTGGTAAGCGGGC < 41bp 1 0.328802973893208 1 0.272375464439392 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GABRQ ENSG00000147402 CDS Human other chrX:151806795 chrX:151806780 nonsynonymous SNV 0.003 0 6 hm5C_associated_SNPs_39545 0 0 0 0 1 chromatin 1 0.500231672541977 1 0.999536654916046 hm5C_site_38872 DeepMRMD:1;iRNA_m5C:0.999536654916046 38873 chr1 218504395 218504395 1 + G T UCEC 218504390 + 218504370 218504410 41 GGACAAGGAAAGTGATGGGCCAGATGACAGCAGACCAGAAT GGACAAGGAAAGTGATGGGCCAGATTACAGCAGACCAGAAT < 41bp 1 0.383305153435163 1 0.400295257568359 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RRP15 ENSG00000067533 CDS Human protein_coding chr1:218504390 chr1:218504395 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_39546 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_38873 DeepMRMD:1;iRNA_m5C:0.999536712157815 38874 chr6 21198326 21198326 1 + C A UCEC 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TCCAAGTTTTATGTTGCACACAATCAATTATATGAGCAGGT < 41bp 1 0.0395512316454164 1 0.154701203107834 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198326 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_39547 0 0 0 0 2 Nucleus 1 0.500234218409791 1 0.999531563180417 hm5C_site_38874 DeepMRMD:1;iRNA_m5C:0.999531563180417 38875 chr12 52370282 52370282 1 + C A UCEC 52370279 + 52370259 52370299 41 GAGACTGGACATGGAAGATCCCTCATGTGAGATGTGTCTCT GAGACTGGACATGGAAGATCCCTAATGTGAGATGTGTCTCT < 41bp 1 0.18544727666852 1 0.425498127937317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52370279 chr12:52370282 stopgain 0.993 1 24 hm5C_associated_SNPs_39548 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645278471 1 0.999536709443059 hm5C_site_38875 DeepMRMD:1;iRNA_m5C:0.999536709443059 38876 chr11 34167654 34167654 1 + C T UCEC 34167634 + 34167614 34167654 41 TTTTGATTTTTCTCTAGTGACAAGAAAAGGAAGTTAGAGGC TTTTGATTTTTCTCTAGTGACAAGAAAAGGAAGTTAGAGGT < 41bp 1 0.63126433982535 1 0.324666738510132 experiment 0.7374713203493 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34167634 chr11:34167654 nonsynonymous SNV 0.659 0 41 hm5C_associated_SNPs_39549 0 0 1 0 1 chromatin 1 0.500231443133796 1 0.999537113732408 hm5C_site_38876 DeepMRMD:1;iRNA_m5C:0.999537113732408 38877 chr3 112715747 112715747 1 + G T UCEC 112715739 + 112715719 112715759 41 TCTTTTCTACATGCTTATAGCTTGAAGAGAACATTTTTATT TCTTTTCTACATGCTTATAGCTTGAAGATAACATTTTTATT < 41bp 1 0.428130410084956 1 0.199587285518646 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112715739 chr3:112715747 nonsynonymous SNV 0.997 4 29 hm5C_associated_SNPs_39550 0 0 0 0 2 Ribosome 1 0.500232485827234 1 0.999535028345531 hm5C_site_38877 DeepMRMD:1;iRNA_m5C:0.999535028345531 38878 chr2 128861533 128861533 1 + G T UCEC 128861524 + 128861504 128861544 41 AGTGAGTTTTTAGCAGAAGACAGTCAAGAGAAATTTTGGAA AGTGAGTTTTTAGCAGAAGACAGTCAAGATAAATTTTGGAA < 41bp 1 0.0642238554336519 1 0.164056748151779 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128861524 chr2:128861533 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_39551 0 0 1 0 2 Nucleus 1 0.500232297241388 1 0.999535405517224 hm5C_site_38878 DeepMRMD:1;iRNA_m5C:0.999535405517224 38879 chr7 150707877 150707877 1 + C T UCEC 150707858 + 150707838 150707878 41 AGCACCCACCCAGGAGAGATCCACCTCACTGTAGCTGTGCT AGCACCCACCCAGGAGAGATCCACCTCACTGTAGCTGTGTT < 41bp 1 0.0724817516788471 1 0.159210354089737 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOS3 ENSG00000164867 CDS Human protein_coding chr7:150707858 chr7:150707877 synonymous SNV . 0 40 hm5C_associated_SNPs_39552 0 0 1 0 0 chromatin 1 0.500231643923177 1 0.999536712153645 hm5C_site_38879 DeepMRMD:1;iRNA_m5C:0.999536712153645 38880 chr1 183101655 183101655 1 + T G UCEC 183101645 + 183101625 183101665 41 GGCAGGAGAAAATCAAACAGCATTTGAGATTGAAGAGCTTA GGCAGGAGAAAATCAAACAGCATTTGAGATGGAAGAGCTTA < 41bp 1 0.0284555610755198 1 0.0967668890953064 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101645 chr1:183101655 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_39554 0 0 1 0 1 Ribosome 1 0.50023164394069 1 0.99953671211862 hm5C_site_38880 DeepMRMD:1;iRNA_m5C:0.99953671211862 38881 chr7 130020985 130020985 1 + A C UCEC 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGC < 41bp 1 0.308270576645131 1 0.121644288301468 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020985 nonsynonymous SNV 0.987 0 41 hm5C_associated_SNPs_39556 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921132 1 0.999536712157736 hm5C_site_38881 DeepMRMD:1;iRNA_m5C:0.999536712157736 38882 chr7 130020985 130020985 1 + A C UCEC 130021005 + 130020985 130021025 41 AAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG CAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG < 41bp 1 0.383319674449545 1 0.173380672931671 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021005 chr7:130020985 nonsynonymous SNV 0.987 0 1 hm5C_associated_SNPs_39557 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_38882 DeepMRMD:1;iRNA_m5C:0.999536712157815 38883 chr11 65267028 65267028 1 + C A UCEC 65267046 + 65267026 65267066 41 GTCATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACG GTAATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACG < 41bp 1 0.376569264416826 1 0.224397897720337 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267046 chr11:65267028 . . 0 3 hm5C_associated_SNPs_39558 0 0 1 0 0 unknown 1 0.500231667593913 1 0.999536664812174 hm5C_site_38883 DeepMRMD:1;iRNA_m5C:0.999536664812174 38884 chr11 65267028 65267028 1 + C A UCEC 65267048 + 65267028 65267068 41 CATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAA AATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAA < 41bp 1 0.0945406408295234 1 0.173979431390762 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267048 chr11:65267028 . . 0 1 hm5C_associated_SNPs_39559 0 0 1 0 0 unknown 1 0.500231601854316 1 0.999536796291367 hm5C_site_38884 DeepMRMD:1;iRNA_m5C:0.999536796291367 38885 chr1 32622987 32622987 1 + C A UCEC 32623004 + 32622984 32623024 41 TTTCTGATGATTCTGACCTGCAGTTAGCAACCACACAGAAA TTTATGATGATTCTGACCTGCAGTTAGCAACCACACAGAAA < 41bp 1 0.137571587307697 1 0.110078901052475 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32623004 chr1:32622987 nonsynonymous SNV 0.787 4 4 hm5C_associated_SNPs_39561 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38885 DeepMRMD:1;iRNA_m5C:0.999536712157815 38886 chr8 145662242 145662242 1 + G A UCEC 145662226 - 145662206 145662246 41 GCTGCGAAGGCATCACCCCCCTCCACGATGCCCTCAACTGT GCTGTGAAGGCATCACCCCCCTCCACGATGCCCTCAACTGT < 41bp 1 0.602747500824294 1 0.922515511512756 experiment 0.794504998351412 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TONSL ENSG00000160949 CDS Human protein_coding chr8:145662226 chr8:145662242 synonymous SNV . 0 5 hm5C_associated_SNPs_39562 0 0 1 0 1 Nucleus 1 0.50023166158216 0.154968976974488 0.999536676835679 hm5C_site_38886 DeepMRMD:0.154968976974488;iRNA_m5C:0.999536676835679 38887 chr1 6681588 6681588 1 + A C UCEC 6681570 + 6681550 6681590 41 CCACACCTGGATTCACCTGTCCTGTGCGAAAATCCGGAAAT CCACACCTGGATTCACCTGTCCTGTGCGAAAATCCGGACAT < 41bp 1 0.236958931890365 1 0.291622877120972 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681570 chr1:6681588 nonsynonymous SNV 0.999 5 39 hm5C_associated_SNPs_39563 0 0 1 0 0 cytosol 1 0.500231642895404 1 0.999536714209192 hm5C_site_38887 DeepMRMD:1;iRNA_m5C:0.999536714209192 38888 chr8 1876686 1876686 1 + C T UCEC 1876673 + 1876653 1876693 41 CCCAAAGTCATTGAGTGCTTCAACGTGGAATCTCGCATCCT CCCAAAGTCATTGAGTGCTTCAACGTGGAATCTTGCATCCT < 41bp 1 0.391787775777259 1 0.441111087799072 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1876673 chr8:1876686 nonsynonymous SNV 0.952 3 34 hm5C_associated_SNPs_39564 0 0 0 0 1 Nucleus 1 0.500231643920487 1 0.999536712159026 hm5C_site_38888 DeepMRMD:1;iRNA_m5C:0.999536712159026 38889 chr12 21598285 21598285 1 + C A UCEC 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TATAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG < 41bp 1 0.565136069264844 1 0.714026749134064 experiment 0.869727861470311 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598285 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_39565 0 0 0 0 1 Cytosol 1 0.500231790901147 0.571946501731872 0.999536418197706 hm5C_site_38889 DeepMRMD:0.571946501731872;iRNA_m5C:0.999536418197706 38890 chr16 29853325 29853325 1 + A G UCEC 29853323 + 29853303 29853343 41 GCTGGGCGGCCCAAGCGTCCCCATGCCCGCCGTGCGCTCTG GCTGGGCGGCCCAAGCGTCCCCGTGCCCGCCGTGCGCTCTG < 41bp 1 0.479253541524387 1 0.111263960599899 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29853323 chr16:29853325 nonsynonymous SNV 0.966 2 23 hm5C_associated_SNPs_39566 0 0 0 0 0 Nucleus 1 0.500230863999603 1 0.999538272000794 hm5C_site_38890 DeepMRMD:1;iRNA_m5C:0.999538272000794 38891 chr6 34950943 34950943 1 + C T UCEC 34950926 + 34950906 34950946 41 AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCGGG AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTTGGG < 41bp 1 0.11507082600149 1 0.197713226079941 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:34950926 chr6:34950943 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_39567 0 0 1 0 2 Cytosol 1 0.50023164501339 1 0.99953670997322 hm5C_site_38891 DeepMRMD:1;iRNA_m5C:0.99953670997322 38892 chr6 24423247 24423247 1 + G A UCEC 24423252 + 24423232 24423272 41 TGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCATTGCCT TGCTTTCATTCCTTGAACGACAGCTAGAAGCTCCATTGCCT < 41bp 1 0.473370651448612 1 0.0264926552772522 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423252 chr6:24423247 nonsynonymous SNV 0.995 4 16 hm5C_associated_SNPs_39568 0 0 1 0 2 Ribosome 1 0.500231643583897 1 0.999536712832205 hm5C_site_38892 DeepMRMD:1;iRNA_m5C:0.999536712832205 38893 chr5 5303772 5303772 1 + G T UCEC 5303760 + 5303740 5303780 41 CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCGACGCTGTC CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCTACGCTGTC < 41bp 1 0.520002205891478 1 0.196482330560684 experiment 0.959995588217044 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303760 chr5:5303772 nonsynonymous SNV 0.001 3 33 hm5C_associated_SNPs_39569 0 0 0 0 1 exosome 1 0.500231641922891 1 0.999536716154218 hm5C_site_38893 DeepMRMD:1;iRNA_m5C:0.999536716154218 38894 chr1 35879605 35879605 1 + T G UCEC 35879615 + 35879595 35879635 41 TAGATAACATTTTTACTGAGCCCTATTCCAGATTTATGATT TAGATAACATGTTTACTGAGCCCTATTCCAGATTTATGATT < 41bp 1 0.0853929876530477 1 0.0428610742092133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35879615 chr1:35879605 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_39570 0 0 1 0 2 Cytosol 1 0.500231643925678 1 0.999536712148645 hm5C_site_38894 DeepMRMD:1;iRNA_m5C:0.999536712148645 38895 chr1 35879605 35879605 1 + T G UCEC 35879623 + 35879603 35879643 41 ATTTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTAC ATGTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTAC < 41bp 1 0.316934366773672 1 0.717462301254272 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35879623 chr1:35879605 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_39571 0 0 1 0 2 Cytosol 1 0.500231631646255 0.565075397491456 0.99953673670749 hm5C_site_38895 DeepMRMD:0.565075397491456;iRNA_m5C:0.99953673670749 38896 chr13 28854640 28854640 1 + C A UCEC 28854635 + 28854615 28854655 41 ATTTTATACTCAATTGGATGCTGCTCAAATGAGAAATGATG ATTTTATACTCAATTGGATGCTGCTAAAATGAGAAATGATG < 41bp 1 0.164094723841975 1 0.151957124471664 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAN3 ENSG00000152520 CDS Human protein_coding chr13:28854635 chr13:28854640 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_39572 0 0 1 0 2 Ribosome 1 0.50023167074014 1 0.999536658519719 hm5C_site_38896 DeepMRMD:1;iRNA_m5C:0.999536658519719 38897 chr4 154197185 154197185 1 + G A UCEC 154197184 + 154197164 154197204 41 ACCTGATGGACGTGCTGCAGCGAACTCCAGGCAGCAACGCT ACCTGATGGACGTGCTGCAGCAAACTCCAGGCAGCAACGCT < 41bp 1 0.212388300495757 1 0.07687047123909 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154197184 chr4:154197185 nonsynonymous SNV 0.991 2 22 hm5C_associated_SNPs_39573 0 0 1 0 1 Ribosome 1 0.500231643921385 1 0.999536712157231 hm5C_site_38897 DeepMRMD:1;iRNA_m5C:0.999536712157231 38898 chr9 19336788 19336788 1 + G T UCEC 19336770 + 19336750 19336790 41 ATGATGCTAACAATGGGGAGCACACAGTCTTCGTCAGAGAT ATGATGCTAACAATGGGGAGCACACAGTCTTCGTCAGATAT < 41bp 1 0.048598769475088 1 0.205629169940948 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336770 chr9:19336788 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_39574 0 0 1 0 1 Nucleus 1 0.500232268627098 1 0.999535462745803 hm5C_site_38898 DeepMRMD:1;iRNA_m5C:0.999535462745803 38899 chr3 158310363 158310363 1 + C A UCEC 158310369 + 158310349 158310389 41 TGATGGTGAAGATTCTTTGACTGTAAGTTCTTTTTTTTAAG TGATGGTGAAGATTATTTGACTGTAAGTTCTTTTTTTTAAG < 41bp 1 0.592598848886101 1 0.0770722031593323 experiment 0.814802302227798 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MLF1 ENSG00000178053 CDS Human protein_coding chr3:158310369 chr3:158310363 nonsynonymous SNV 0.346 0 15 hm5C_associated_SNPs_39575 0 0 0 0 1 Cytosol 1 0.500231677180436 1 0.999536645639127 hm5C_site_38899 DeepMRMD:1;iRNA_m5C:0.999536645639127 38900 chr5 156816265 156816265 1 + C T UCEC 156816259 + 156816239 156816279 41 CGGCTGTGCTGTGGCCTGTCCATGTTCGAGGTCATCCTGAC CGGCTGTGCTGTGGCCTGTCCATGTTTGAGGTCATCCTGAC < 41bp 1 0.372786331647843 1 0.560127198696136 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816259 chr5:156816265 synonymous SNV . 0 27 hm5C_associated_SNPs_39576 0 0 1 0 1 Cytosol 1 0.500231643938212 0.879745602607728 0.999536712123575 hm5C_site_38900 DeepMRMD:0.879745602607728;iRNA_m5C:0.999536712123575 38901 chr9 96026309 96026309 1 + G A UCEC 96026292 + 96026272 96026312 41 TCGACTTGGACGGGGACGCACCCGATGAAATTGCCACGTAT TCGACTTGGACGGGGACGCACCCGATGAAATTGCCACATAT < 41bp 1 0.472734634573604 1 0.454972565174103 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96026292 chr9:96026309 synonymous SNV . 0 38 hm5C_associated_SNPs_39578 0 0 1 0 1 Nucleus 1 0.500231643419311 1 0.999536713161378 hm5C_site_38901 DeepMRMD:1;iRNA_m5C:0.999536713161378 38902 chrX 48759707 48759707 1 + G A UCEC 48759703 + 48759683 48759723 41 GACAGGGAACGGGATCGGGACCGCGGGTATGACAAGGCAGA GACAGGGAACGGGATCGGGACCGCAGGTATGACAAGGCAGA < 41bp 1 0.588354568054834 1 0.0586557388305664 experiment 0.823290863890332 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759703 chrX:48759707 nonsynonymous SNV 0.573 3 25 hm5C_associated_SNPs_39579 0 0 1 1 0 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_38902 DeepMRMD:1;iRNA_m5C:0.999536712157812 38903 chrX 48759707 48759707 1 + G A UCEC 48759720 + 48759700 48759740 41 GGACCGCGGGTATGACAAGGCAGACCGGGAAGAGGGCAAAG GGACCGCAGGTATGACAAGGCAGACCGGGAAGAGGGCAAAG < 41bp 1 0.571647701641416 1 0.170189052820206 experiment 0.856704596717167 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759720 chrX:48759707 nonsynonymous SNV 0.573 3 8 hm5C_associated_SNPs_39581 0 0 1 1 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38903 DeepMRMD:1;iRNA_m5C:0.999536712157815 38904 chr18 74620345 74620345 1 + G A UCEC 74620335 + 74620315 74620355 41 AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATGC AGCCTCGATAGATGACAGCACTGTAGACCAACAGAGCATGC < 41bp 1 0.483078349196805 1 0.187785714864731 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74620335 chr18:74620345 synonymous SNV . 0 31 hm5C_associated_SNPs_39582 0 0 1 0 1 Cytosol 1 0.500231643921874 1 0.999536712156252 hm5C_site_38904 DeepMRMD:1;iRNA_m5C:0.999536712156252 38905 chr17 37822258 37822258 1 + G A UCEC 37822248 + 37822228 37822268 41 GGTGGCCAGTGTGTGGACCGCCAGGAGGTGGCTGAGATCAC GGTGGCCAGTGTGTGGACCGCCAGGAGGTGACTGAGATCAC < 41bp 1 0.675532475730101 1 0.624145746231079 experiment 0.648935048539799 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCAP ENSG00000173991 CDS Human protein_coding chr17:37822248 chr17:37822258 nonsynonymous SNV 0.998 1 31 hm5C_associated_SNPs_39583 0 0 1 0 0 Endoplasmic reticulum 1 0.498618829180347 0.751708507537842 1 hm5C_site_38905 DeepMRMD:0.751708507537842;iRNA_m5C:1 38906 chr6 151671609 151671609 1 + G T UCEC 151671614 + 151671594 151671634 41 AAAAGAGCAAGGAGAGGGTCCTCTTCTGATGAGGAAGGGGG AAAAGAGCAAGGAGATGGTCCTCTTCTGATGAGGAAGGGGG < 41bp 1 0.0404525620275143 1 0.0907747745513916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151671614 chr6:151671609 nonsynonymous SNV 0.639 2 16 hm5C_associated_SNPs_39584 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38906 DeepMRMD:1;iRNA_m5C:0.999536712157815 38907 chr6 125550325 125550325 1 + A G UCEC 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GGGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT < 41bp 1 0.262459614550095 1 0.090606302022934 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550325 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_39585 0 0 1 0 2 Ribosome 1 0.500231643710881 1 0.999536712578237 hm5C_site_38907 DeepMRMD:1;iRNA_m5C:0.999536712578237 38908 chr12 57569349 57569349 1 + C T UCEC 57569364 + 57569344 57569384 41 GACAACCACACCTGCCAGATCCAGAGCTACTGTGCCAAGCA GACAATCACACCTGCCAGATCCAGAGCTACTGTGCCAAGCA < 41bp 1 0.197784138829729 1 0.739909172058105 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57569364 chr12:57569349 synonymous SNV . 0 6 hm5C_associated_SNPs_39586 0 0 1 0 0 Exosome 1 0.500231595578578 0.52018165588379 0.999536808842844 hm5C_site_38908 DeepMRMD:0.52018165588379;iRNA_m5C:0.999536808842844 38909 chrX 73046747 73046747 1 + A G UCEC 73046754 - 73046734 73046774 41 GTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGA GTTGGATGGAAGTCTCAAGGCTTGAGTCAGAAGTCTTAAGA < 41bp 1 0.567936564499194 1 0.128127545118332 experiment 0.864126871001613 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046754 chrX:73046747 . . 0 28 hm5C_associated_SNPs_39587 0 0 1 1 0 unknown 1 0.500231645229891 1 0.999536709540218 hm5C_site_38909 DeepMRMD:1;iRNA_m5C:0.999536709540218 38910 chr17 33310226 33310226 1 + G A UCEC 33310210 + 33310190 33310230 41 GTTCTATCATTCCAGGGAAGCCATCTAAGATCACGTGCCAC GTTCTATCATTCCAGGGAAGCCATCTAAGATCACGTACCAC < 41bp 1 0.038101802184204 1 0.132887452840805 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33310210 chr17:33310226 nonsynonymous SNV 0.998 0 37 hm5C_associated_SNPs_39589 0 0 1 0 0 Cytosol 1 0.50023164383216 1 0.999536712335681 hm5C_site_38910 DeepMRMD:1;iRNA_m5C:0.999536712335681 38911 chr13 61034620 61034620 1 + C T UCEC 61034613 + 61034593 61034633 41 CACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATA CACCAAGGATGCTGCGATTACAGATGATTGATGGTCATATA < 41bp 1 0.679475406367147 1 0.746725261211395 experiment 0.641049187265706 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034613 chr13:61034620 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_39590 0 0 1 0 1 Cytosol 1 0.500231623254953 0.50654947757721 0.999536753490095 hm5C_site_38911 DeepMRMD:0.50654947757721;iRNA_m5C:0.999536753490095 38912 chr19 36128122 36128122 1 + G A UCEC 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT ACCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT < 41bp 1 0.173881307888589 1 0.47196552157402 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128122 nonsynonymous SNV 0.997 1 1 hm5C_associated_SNPs_39591 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38912 DeepMRMD:1;iRNA_m5C:0.999536712157815 38913 chr13 111155785 111155785 1 + C T UCEC 111155778 + 111155758 111155798 41 GAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCA GAACACTGGACCCACTGGGGCGGTGGGTGACAGAGGCCCCA < 41bp 1 0.216525757033458 1 0.76112699508667 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111155778 chr13:111155785 synonymous SNV . 0 28 hm5C_associated_SNPs_39592 0 0 0 0 2 Cytosol 1 0.500231643924594 0.47774600982666 0.999536712150812 hm5C_site_38913 DeepMRMD:0.47774600982666;iRNA_m5C:0.999536712150812 38914 chr1 171535877 171535877 1 + C T UCEC 171535864 + 171535844 171535884 41 ACAAGAGAAACCAAGCCCAGCTACAGTCAGAAGCACAGATC ACAAGAGAAACCAAGCCCAGCTACAGTCAGAAGTACAGATC < 41bp 1 0.444903343695791 1 0.503023624420166 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171535864 chr1:171535877 synonymous SNV . 0 34 hm5C_associated_SNPs_39594 0 0 1 0 0 Cytosol 1 0.500231643921089 0.993952751159668 0.999536712157821 hm5C_site_38914 DeepMRMD:0.993952751159668;iRNA_m5C:0.999536712157821 38915 chr19 45493777 45493777 1 + C T UCEC 45493765 + 45493745 45493785 41 TACATCCTGGACAACGAGACCAACTTCGTGGTCCAGGTCAG TACATCCTGGACAACGAGACCAACTTCGTGGTTCAGGTCAG < 41bp 1 0.357298014438246 1 0.0869581401348114 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493765 chr19:45493777 synonymous SNV . 0 33 hm5C_associated_SNPs_39595 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38915 DeepMRMD:1;iRNA_m5C:0.999536712157815 38916 chr10 93768929 93768929 1 + C T UCEC 93768927 + 93768907 93768947 41 TGCTCTAGAGAATATCTCAACCCGTTGCATTACACTGGACC TGCTCTAGAGAATATCTCAACCTGTTGCATTACACTGGACC < 41bp 1 0.070428598345277 1 0.0910655856132507 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93768927 chr10:93768929 nonsynonymous SNV 0.950 5 23 hm5C_associated_SNPs_39596 0 0 1 0 1 Nucleus 1 0.500231643930991 1 0.999536712138019 hm5C_site_38916 DeepMRMD:1;iRNA_m5C:0.999536712138019 38917 chr17 43220897 43220897 1 + G A UCEC 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TCGTCATCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG < 41bp 1 0.404713514765061 1 0.801491856575012 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220897 nonsynonymous SNV 0.992 0 6 hm5C_associated_SNPs_39597 0 0 1 0 1 Cytosol 1 0.500231643765829 0.397016286849976 0.999536712468343 hm5C_site_38917 DeepMRMD:0.397016286849976;iRNA_m5C:0.999536712468343 38918 chr7 77214872 77214872 1 + G A UCEC 77214877 + 77214857 77214897 41 TAGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAG TAGATCATTGTAATGACCTGCCGAGAATTTGAGATGGGAAG < 41bp 1 0.11512021515674 1 0.703410983085632 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214877 chr7:77214872 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_39598 0 0 1 1 1 Ribosome 1 0.50023164390326 0.593178033828736 0.99953671219348 hm5C_site_38918 DeepMRMD:0.593178033828736;iRNA_m5C:0.99953671219348 38919 chr19 42857212 42857212 1 + G A UCEC 42857193 + 42857173 42857213 41 CACACCCGCCCCGGGTCCGCCAGCCCCCCGCTGCTCCCGGG CACACCCGCCCCGGGTCCGCCAGCCCCCCGCTGCTCCCGAG < 41bp 1 0.201585407138732 1 0.68694943189621 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42857193 chr19:42857212 synonymous SNV . 0 40 hm5C_associated_SNPs_39600 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921085 0.62610113620758 0.99953671215783 hm5C_site_38919 DeepMRMD:0.62610113620758;iRNA_m5C:0.99953671215783 38920 chr17 36622904 36622904 1 + G A UCEC 36622899 + 36622879 36622919 41 CGGTTGGAGGAGGTGGCTGCCCCCCGCCCGTGGCCCTGCTC CGGTTGGAGGAGGTGGCTGCCCCCCACCCGTGGCCCTGCTC < 41bp 1 0.145647979022379 1 0.229405701160431 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARHGAP23 ENSG00000225485 CDS Human other chr17:36622899 chr17:36622904 nonsynonymous SNV 0.713 0 26 hm5C_associated_SNPs_39601 0 0 0 0 0 nucleus 1 0.500231637132737 1 0.999536725734526 hm5C_site_38920 DeepMRMD:1;iRNA_m5C:0.999536725734526 38921 chr19 14561827 14561827 1 + C T UCEC 14561839 + 14561819 14561859 41 GAAGAGCTCGCTGCGGCCTCCTCCGCTGCCTTCAGCACCCG GAAGAGCTTGCTGCGGCCTCCTCCGCTGCCTTCAGCACCCG < 41bp 1 0.652946103420397 1 0.418331801891327 experiment 0.694107793159205 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561839 chr19:14561827 synonymous SNV . 0 9 hm5C_associated_SNPs_39602 0 0 1 0 1 Ribosome 1 0.500231643921082 1 0.999536712157836 hm5C_site_38921 DeepMRMD:1;iRNA_m5C:0.999536712157836 38922 chr17 77755539 77755539 1 + C T UCEC 77755519 + 77755499 77755539 41 CATGAGAAGGAGGTGCAGAACCGGAAGAGAGGCAAGAGGCC CATGAGAAGGAGGTGCAGAACCGGAAGAGAGGCAAGAGGCT < 41bp 1 0.657601539501355 1 0.417564511299133 experiment 0.68479692099729 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755519 chr17:77755539 nonsynonymous SNV 0.852 4 41 hm5C_associated_SNPs_39603 0 0 1 0 2 chromatin 1 0.500231643892492 1 0.999536712215015 hm5C_site_38922 DeepMRMD:1;iRNA_m5C:0.999536712215015 38923 chr17 77755539 77755539 1 + C T UCEC 77755547 + 77755527 77755567 41 GAGGCAAGAGGCCGAGAGGCCGGCCAAGGAAGCTCACTGCC GAGGCAAGAGGCTGAGAGGCCGGCCAAGGAAGCTCACTGCC < 41bp 1 0.42353528099482 1 0.240433722734451 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755547 chr17:77755539 nonsynonymous SNV 0.852 4 13 hm5C_associated_SNPs_39604 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_38923 DeepMRMD:1;iRNA_m5C:0.999536712157815 38924 chr15 94841671 94841671 1 + G A UCEC 94841673 + 94841653 94841693 41 TGATCTCCTGGAGGCTGAGGCCTTGGCCCCAGAGGGCCGGC TGATCTCCTGGAGGCTGAAGCCTTGGCCCCAGAGGGCCGGC < 41bp 1 0.241764487276651 1 0.105920433998108 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCTP2 ENSG00000140563 CDS Human protein_coding chr15:94841673 chr15:94841671 synonymous SNV . 0 19 hm5C_associated_SNPs_39605 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38924 DeepMRMD:1;iRNA_m5C:0.999536712157815 38925 chr7 2473363 2473363 1 + C T UCEC 2473368 + 2473348 2473388 41 GGACCGGCAGCTCCGCTTCCCCCCGAGCTACCGGAACAGGA GGACCGGCAGCTCCGTTTCCCCCCGAGCTACCGGAACAGGA < 41bp 1 0.353907262776353 1 0.13817971944809 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2473368 chr7:2473363 synonymous SNV . 0 16 hm5C_associated_SNPs_39608 0 0 1 0 0 nucleolus 1 0.500231643933053 1 0.999536712133895 hm5C_site_38925 DeepMRMD:1;iRNA_m5C:0.999536712133895 38926 chr11 610284 610284 1 + C T UCEC 610293 + 610273 610313 41 CAGGTGTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCC CAGGTGTTCTCTGAGCTGCCCTTTCCCAGTCACGTGCTTCC < 41bp 1 0.0226503444029708 1 0.0263752639293671 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610293 chr11:610284 synonymous SNV . 0 12 hm5C_associated_SNPs_39609 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38926 DeepMRMD:1;iRNA_m5C:0.999536712157815 38927 chr9 137021680 137021680 1 + C T UCEC 137021694 + 137021674 137021714 41 TTCAGACGAAAGAGATTGTACAGAAACTACAAGGCCACACA TTCAGATGAAAGAGATTGTACAGAAACTACAAGGCCACACA < 41bp 1 0.635395205534742 1 0.461909085512161 experiment 0.729209588930516 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR5 ENSG00000196363 CDS Human protein_coding chr9:137021694 chr9:137021680 nonsynonymous SNV 0.951 4 7 hm5C_associated_SNPs_39610 0 0 1 0 2 Cytosol 1 0.500231616368477 1 0.999536767263046 hm5C_site_38927 DeepMRMD:1;iRNA_m5C:0.999536767263046 38928 chr19 1037833 1037833 1 + C T UCEC 1037820 + 1037800 1037840 41 CACAGTGGCCGATGGGGCTCCCTCGGGCACCGGCGACTGCC CACAGTGGCCGATGGGGCTCCCTCGGGCACCGGTGACTGCC < 41bp 1 0.193141828215756 1 0.179466247558594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037820 chr19:1037833 synonymous SNV . 0 34 hm5C_associated_SNPs_39611 0 0 1 0 0 Ribosome 1 0.500231643921084 1 0.999536712157833 hm5C_site_38928 DeepMRMD:1;iRNA_m5C:0.999536712157833 38929 chr19 1037833 1037833 1 + C T UCEC 1037841 + 1037821 1037861 41 CTCGGGCACCGGCGACTGCCCGGACCCGGGGGAGGTCCCTG CTCGGGCACCGGTGACTGCCCGGACCCGGGGGAGGTCCCTG < 41bp 1 0.677639744064196 1 0.712559521198273 experiment 0.644720511871609 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037841 chr19:1037833 synonymous SNV . 0 13 hm5C_associated_SNPs_39612 0 0 1 0 0 Ribosome 1 0.500231643918616 0.574880957603454 0.999536712162769 hm5C_site_38929 DeepMRMD:0.574880957603454;iRNA_m5C:0.999536712162769 38930 chr19 1037833 1037833 1 + C T UCEC 1037845 + 1037825 1037865 41 GGCACCGGCGACTGCCCGGACCCGGGGGAGGTCCCTGAATA GGCACCGGTGACTGCCCGGACCCGGGGGAGGTCCCTGAATA < 41bp 1 0.661488543589954 1 0.856936454772949 experiment 0.677022912820092 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037845 chr19:1037833 synonymous SNV . 0 9 hm5C_associated_SNPs_39613 0 0 1 0 0 Ribosome 1 0.500231593750942 0.286127090454102 0.999536812498115 hm5C_site_38930 DeepMRMD:0.286127090454102;iRNA_m5C:0.999536812498115 38931 chr19 1037833 1037833 1 + C T UCEC 1037846 + 1037826 1037866 41 GCACCGGCGACTGCCCGGACCCGGGGGAGGTCCCTGAATAT GCACCGGTGACTGCCCGGACCCGGGGGAGGTCCCTGAATAT < 41bp 1 0.689313799364491 1 0.847740292549133 experiment 0.621372401271018 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037846 chr19:1037833 synonymous SNV . 0 8 hm5C_associated_SNPs_39614 0 0 1 0 0 Ribosome 1 0.500231642262616 0.304519414901734 0.999536715474768 hm5C_site_38931 DeepMRMD:0.304519414901734;iRNA_m5C:0.999536715474768 38932 chr1 32622991 32622991 1 + T C UCEC 32623004 + 32622984 32623024 41 TTTCTGATGATTCTGACCTGCAGTTAGCAACCACACAGAAA TTTCTGACGATTCTGACCTGCAGTTAGCAACCACACAGAAA < 41bp 1 0.12849483976853 1 0.114109456539154 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32623004 chr1:32622991 synonymous SNV . 0 8 hm5C_associated_SNPs_39615 0 0 1 0 2 Cytosol 1 0.5002367233896 1 0.999526553220801 hm5C_site_38932 DeepMRMD:1;iRNA_m5C:0.999526553220801 38933 chr19 18053554 18053554 1 + C T UCEC 18053574 + 18053554 18053594 41 CGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC TGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC < 41bp 1 0.383120927226189 1 0.0806451439857483 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053574 chr19:18053554 synonymous SNV . 0 1 hm5C_associated_SNPs_39616 0 0 1 0 1 Ribosome 1 0.500231643911416 1 0.999536712177168 hm5C_site_38933 DeepMRMD:1;iRNA_m5C:0.999536712177168 38934 chr4 144460028 144460028 1 + G A UCEC 144460033 + 144460013 144460053 41 TGGCATCAATCTTGCGACTGCTGATGTAGTAATTTTGTATG TGGCATCAATCTTGCAACTGCTGATGTAGTAATTTTGTATG < 41bp 1 0.277972665535193 1 0.157326400279999 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144460033 chr4:144460028 synonymous SNV . 0 16 hm5C_associated_SNPs_39618 0 0 1 0 2 Nucleus 1 0.500231017871941 1 0.999537964256118 hm5C_site_38934 DeepMRMD:1;iRNA_m5C:0.999537964256118 38935 chr1 44436769 44436769 1 + T C UCEC 44436760 + 44436740 44436780 41 CTTCGTGCTTCGTCAACGTTCTGTGGCCTTGGAGCTCTGTG CTTCGTGCTTCGTCAACGTTCTGTGGCCTCGGAGCTCTGTG < 41bp 1 0.49296653424386 1 0.186415910720825 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPH2 ENSG00000132768 CDS Human protein_coding chr1:44436760 chr1:44436769 nonsynonymous SNV 0.778 2 30 hm5C_associated_SNPs_39619 0 0 1 0 1 nucleolus 1 0.500231636663328 1 0.999536726673343 hm5C_site_38935 DeepMRMD:1;iRNA_m5C:0.999536726673343 38936 chr3 49568291 49568291 1 + C T UCEC 49568306 + 49568286 49568326 41 CCACACCCTGGAGGGCCTCCCCCTTGACACTGATAAGGGTG CCACATCCTGGAGGGCCTCCCCCTTGACACTGATAAGGGTG < 41bp 1 0.208463671085644 1 0.284194052219391 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DAG1 ENSG00000173402 CDS Human protein_coding chr3:49568306 chr3:49568291 nonsynonymous SNV 0.074 1 6 hm5C_associated_SNPs_39620 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38936 DeepMRMD:1;iRNA_m5C:0.999536712157815 38937 chr12 110778665 110778665 1 + C T UCEC 110778654 + 110778634 110778674 41 TGAGGACGTGACGTCAAAAGCTTTCACAGGCCGGGAGTTTG TGAGGACGTGACGTCAAAAGCTTTCACAGGCTGGGAGTTTG < 41bp 1 0.0904499165292375 1 0.0447016060352325 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110778654 chr12:110778665 nonsynonymous SNV 0.989 5 32 hm5C_associated_SNPs_39621 0 0 1 0 0 Nucleus 1 0.500231642450328 1 0.999536715099344 hm5C_site_38937 DeepMRMD:1;iRNA_m5C:0.999536715099344 38938 chr17 4856575 4856575 1 + C T UCEC 4856570 + 4856550 4856590 41 CAAACTCACCCTTCCAGAAACTAAGCGTTGTGGATCAAGAA CAAACTCACCCTTCCAGAAACTAAGTGTTGTGGATCAAGAA < 41bp 1 0.204493093070348 1 0.183000952005386 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856570 chr17:4856575 synonymous SNV . 0 26 hm5C_associated_SNPs_39622 1 0 1 0 1 nucleus 1 0.50023164392189 1 0.999536712156221 hm5C_site_38938 DeepMRMD:1;iRNA_m5C:0.999536712156221 not specified not specified 38939 chr15 43820890 43820890 1 + C T UCEC 43820897 + 43820877 43820917 41 GCCTGACACATTGCTCTCCCCTGAGCAGCCAGTGTGTCCTG GCCTGACACATTGTTCTCCCCTGAGCAGCCAGTGTGTCCTG < 41bp 1 0.555341437820538 1 0.438143014907837 experiment 0.889317124358925 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1A ENSG00000166963 CDS Human protein_coding chr15:43820897 chr15:43820890 nonsynonymous SNV 0.582 1 14 hm5C_associated_SNPs_39623 0 0 0 0 0 nucleolus 1 0.500249098858851 1 0.999501802282298 hm5C_site_38939 DeepMRMD:1;iRNA_m5C:0.999501802282298 38940 chr19 7620175 7620175 1 + G A UCEC 7620161 + 7620141 7620181 41 CTCTACGAGAAGGTTTTCTCCAGGCGCGCGGACCGGCACAG CTCTACGAGAAGGTTTTCTCCAGGCGCGCGGACCAGCACAG < 41bp 1 0.618410100672495 1 0.910398483276367 experiment 0.763179798655009 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620161 chr19:7620175 nonsynonymous SNV 0.992 0 35 hm5C_associated_SNPs_39624 0 0 1 1 2 Ribosome 1 0.500231644295271 0.179203033447266 0.999536711409458 hm5C_site_38940 DeepMRMD:0.179203033447266;iRNA_m5C:0.999536711409458 38941 chr19 49611691 49611691 1 + G A UCEC 49611707 + 49611687 49611727 41 CTGCGCCGGAGTGAAGAGGTCGTCCTCTCCATCTGCTGTGT CTGCACCGGAGTGAAGAGGTCGTCCTCTCCATCTGCTGTGT < 41bp 1 0.161500199574148 1 0.0295677781105042 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49611707 chr19:49611691 synonymous SNV . 0 5 hm5C_associated_SNPs_39625 0 0 1 0 0 Nucleus 1 0.500232923637925 1 0.99953415272415 hm5C_site_38941 DeepMRMD:1;iRNA_m5C:0.99953415272415 38942 chr19 49611691 49611691 1 + G A UCEC 49611710 + 49611690 49611730 41 CGCCGGAGTGAAGAGGTCGTCCTCTCCATCTGCTGTGTTTG CACCGGAGTGAAGAGGTCGTCCTCTCCATCTGCTGTGTTTG < 41bp 1 0.0488851697962974 1 0.0279361009597778 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49611710 chr19:49611691 synonymous SNV . 0 2 hm5C_associated_SNPs_39626 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_38942 DeepMRMD:1;iRNA_m5C:0.999536712157815 38943 chr14 23070610 23070610 1 + G A UCEC 23070600 + 23070580 23070620 41 GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGCCCCACTTCC GCTGGCTGAGTAGCTGGCTGCCCACGTGGCACCCCACTTCC < 41bp 1 0.333307773552552 1 0.166586220264435 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23070600 chr14:23070610 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_39627 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38943 DeepMRMD:1;iRNA_m5C:0.999536712157815 38944 chr8 107752698 107752698 1 + T C UCEC 107752684 + 107752664 107752704 41 CGAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT CGAACAATGACAGGTTTAGACACCCCAGTGCTGACGGTGAT < 41bp 1 0.365537293719194 1 0.115660101175308 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752684 chr8:107752698 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_39628 0 0 1 0 1 chromatin 1 0.500231643920681 1 0.999536712158638 hm5C_site_38944 DeepMRMD:1;iRNA_m5C:0.999536712158638 38945 chr17 46128928 46128928 1 + G A UCEC 46128914 + 46128894 46128934 41 CGGGGTGCGAGAAAGCGAAACGGAGCAGGGATTCGGTGAAG CGGGGTGCGAGAAAGCGAAACGGAGCAGGGATTCAGTGAAG < 41bp 1 0.624889987863445 1 0.840571999549866 experiment 0.750220024273111 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128914 chr17:46128928 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_39630 0 0 1 0 1 Ribosome 1 0.500231643921094 0.318856000900268 0.999536712157813 hm5C_site_38945 DeepMRMD:0.318856000900268;iRNA_m5C:0.999536712157813 38946 chr17 46128928 46128928 1 + G A UCEC 46128919 + 46128899 46128939 41 TGCGAGAAAGCGAAACGGAGCAGGGATTCGGTGAAGATTTG TGCGAGAAAGCGAAACGGAGCAGGGATTCAGTGAAGATTTG < 41bp 1 0.672398569178623 1 0.643336415290833 experiment 0.655202861642755 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128919 chr17:46128928 nonsynonymous SNV 0.998 0 30 hm5C_associated_SNPs_39631 0 0 1 0 1 Ribosome 1 0.500231643921093 0.713327169418334 0.999536712157814 hm5C_site_38946 DeepMRMD:0.713327169418334;iRNA_m5C:0.999536712157814 38947 chr17 46128928 46128928 1 + G A UCEC 46128927 + 46128907 46128947 41 AGCGAAACGGAGCAGGGATTCGGTGAAGATTTGGAGGATTT AGCGAAACGGAGCAGGGATTCAGTGAAGATTTGGAGGATTT < 41bp 1 0.563575551276599 1 0.430111169815063 experiment 0.872848897446801 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128927 chr17:46128928 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_39632 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_38947 DeepMRMD:1;iRNA_m5C:0.999536712157815 38948 chr6 142519615 142519615 1 + C T UCEC 142519603 + 142519583 142519623 41 AGAAAATGAAGATGCTGGAGCAGCCTCTCTGCCCACTCAGC AGAAAATGAAGATGCTGGAGCAGCCTCTCTGCTCACTCAGC < 41bp 1 0.31438383629903 1 0.317446649074554 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519603 chr6:142519615 nonsynonymous SNV 1.000 0 33 hm5C_associated_SNPs_39635 0 0 1 1 1 Ribosome 1 0.500231638927512 1 0.999536722144976 hm5C_site_38948 DeepMRMD:1;iRNA_m5C:0.999536722144976 38949 chr17 78172329 78172329 1 + G A UCEC 78172335 + 78172315 78172355 41 CATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACC CATCTTCATCCACCAGGTCACCCCGGGCTCGGCGGCGGACC < 41bp 1 0.335819059746066 1 0.0651576817035675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172335 chr17:78172329 nonsynonymous SNV 0.987 2 15 hm5C_associated_SNPs_39636 0 0 0 0 1 nucleus 1 0.500231643920914 1 0.999536712158171 hm5C_site_38949 DeepMRMD:1;iRNA_m5C:0.999536712158171 38950 chr17 78172329 78172329 1 + G A UCEC 78172336 + 78172316 78172356 41 ATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGCGGACCA ATCTTCATCCACCAGGTCACCCCGGGCTCGGCGGCGGACCA < 41bp 1 0.490407741318118 1 0.592187881469727 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172336 chr17:78172329 nonsynonymous SNV 0.987 2 14 hm5C_associated_SNPs_39637 0 0 0 0 1 nucleus 1 0.500231643921092 0.815624237060546 0.999536712157815 hm5C_site_38950 DeepMRMD:0.815624237060546;iRNA_m5C:0.999536712157815 38951 chr5 72185767 72185767 1 + C T UCEC 72185770 + 72185750 72185790 41 TAGCAGATTCAGTAGGACATCATTTAAACAAACCAGTAAGT TAGCAGATTCAGTAGGATATCATTTAAACAAACCAGTAAGT < 41bp 1 0.106595795421514 1 0.124539881944656 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185770 chr5:72185767 nonsynonymous SNV 0.999 2 18 hm5C_associated_SNPs_39638 0 0 1 0 1 Cytosol 1 0.500231643923537 1 0.999536712152926 hm5C_site_38951 DeepMRMD:1;iRNA_m5C:0.999536712152926 38952 chr5 72185767 72185767 1 + C T UCEC 72185778 + 72185758 72185798 41 TCAGTAGGACATCATTTAAACAAACCAGTAAGTATCTGTTA TCAGTAGGATATCATTTAAACAAACCAGTAAGTATCTGTTA < 41bp 1 0.200611658858674 1 0.0978406965732574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185778 chr5:72185767 nonsynonymous SNV 0.999 2 10 hm5C_associated_SNPs_39639 0 0 1 0 1 Cytosol 1 0.500239797171155 1 0.999520405657689 hm5C_site_38952 DeepMRMD:1;iRNA_m5C:0.999520405657689 38953 chr5 72185767 72185767 1 + C T UCEC 72185782 + 72185762 72185802 41 TAGGACATCATTTAAACAAACCAGTAAGTATCTGTTAAGAA TAGGATATCATTTAAACAAACCAGTAAGTATCTGTTAAGAA < 41bp 1 0.15243616568662 1 0.116260200738907 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185782 chr5:72185767 nonsynonymous SNV 0.999 2 6 hm5C_associated_SNPs_39640 0 0 1 0 1 Cytosol 1 0.500231684611088 1 0.999536630777823 hm5C_site_38953 DeepMRMD:1;iRNA_m5C:0.999536630777823 38954 chr5 72185767 72185767 1 + C T UCEC 72185783 + 72185763 72185803 41 AGGACATCATTTAAACAAACCAGTAAGTATCTGTTAAGAAC AGGATATCATTTAAACAAACCAGTAAGTATCTGTTAAGAAC < 41bp 1 0.321012528069325 1 0.124424010515213 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72185783 chr5:72185767 nonsynonymous SNV 0.999 2 5 hm5C_associated_SNPs_39641 0 0 1 0 1 Cytosol 1 0.500231646662846 1 0.999536706674309 hm5C_site_38954 DeepMRMD:1;iRNA_m5C:0.999536706674309 38955 chr19 42853741 42853741 1 + C T UCEC 42853746 + 42853726 42853766 41 TTCCCTCTGCCTGGGCGGGACCACAAGTATGCAGTAGAGAT TTCCCTCTGCCTGGGTGGGACCACAAGTATGCAGTAGAGAT < 41bp 1 0.12425742252957 1 0.220310598611832 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42853746 chr19:42853741 nonsynonymous SNV 0.141 3 16 hm5C_associated_SNPs_39642 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644113374 1 0.999536711773252 hm5C_site_38955 DeepMRMD:1;iRNA_m5C:0.999536711773252 38956 chr12 123102909 123102909 1 + C T UCEC 123102893 + 123102873 123102913 41 TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGCGTGG TGGACTTGTTTTCACAGGTTCCCTACTTCAGCAAAGTGTGG < 41bp 1 0.0572351845497601 1 0.032362312078476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123102893 chr12:123102909 nonsynonymous SNV 0.971 1 37 hm5C_associated_SNPs_39643 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38956 DeepMRMD:1;iRNA_m5C:0.999536712157815 38957 chr17 48149468 48149468 1 + C A UCEC 48149482 + 48149462 48149502 41 TCACTCCTTCTTCATGGCCCCAGTGGCTCTGCCTTTGGTTT TCACTCATTCTTCATGGCCCCAGTGGCTCTGCCTTTGGTTT < 41bp 1 0.193351967664706 1 0.144791930913925 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48149482 chr17:48149468 nonsynonymous SNV 0.984 0 7 hm5C_associated_SNPs_39645 0 0 0 0 0 Cytosol 1 0.500231641764531 1 0.999536716470938 hm5C_site_38957 DeepMRMD:1;iRNA_m5C:0.999536716470938 38958 chr13 113907464 113907464 1 + G A UCEC 113907465 + 113907445 113907485 41 GTGGTCGAAAACTTCAGTGGCAAACTACTTTGGGACATGCT GTGGTCGAAAACTTCAGTGACAAACTACTTTGGGACATGCT < 41bp 1 0.0732695254395524 1 0.140187948942184 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CUL4A ENSG00000139842 CDS Human protein_coding chr13:113907465 chr13:113907464 stopgain 0.374 1 20 hm5C_associated_SNPs_39646 0 0 1 0 2 Cytosol 1 0.500231643921557 1 0.999536712156885 hm5C_site_38958 DeepMRMD:1;iRNA_m5C:0.999536712156885 38959 chr2 11312072 11312072 1 + G A UCEC 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCTATGTACTTTCATCAGCACGGCCAGTAAGTT < 41bp 1 0.543262275770798 1 0.179821044206619 experiment 0.913475448458405 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312072 nonsynonymous SNV 0.474 1 28 hm5C_associated_SNPs_39647 0 0 0 0 2 Ribosome 1 0.500231898891359 1 0.999536202217282 hm5C_site_38959 DeepMRMD:1;iRNA_m5C:0.999536202217282 38960 chr16 48395721 48395721 1 + C T UCEC 48395730 - 48395710 48395750 41 AAAAATACGATGGTCACCAGCAGTTCTTCGCAATCGTACAG AAAAATACGATGGTCACCAGCAGTTCTTCACAATCGTACAG < 41bp 1 0.229126993330232 1 0.45125088095665 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIAH1 ENSG00000102910;ENSG00000196470 CDS Human other chr16:48395730 chr16:48395721 nonsynonymous SNV 0.996 2 30 hm5C_associated_SNPs_39648 0 0 1 0 0 chromatin 1 0.500231643920964 1 0.999536712158072 hm5C_site_38960 DeepMRMD:1;iRNA_m5C:0.999536712158072 38961 chr15 99672081 99672081 1 + G A UCEC 99672066 + 99672046 99672086 41 GCAGCGAGCCCGACCGGAGCCAGCCGGTCTGTGAGGCATGT GCAGCGAGCCCGACCGGAGCCAGCCGGTCTGTGAGACATGT < 41bp 1 0.375299624807492 1 0.211892902851105 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99672066 chr15:99672081 synonymous SNV . 0 36 hm5C_associated_SNPs_39649 0 0 0 0 0 exosome 1 0.500231643169675 1 0.99953671366065 hm5C_site_38961 DeepMRMD:1;iRNA_m5C:0.99953671366065 38962 chr2 11312073 11312073 1 + C T UCEC 11312065 + 11312045 11312085 41 AAACAGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTT AAACAGAATCTATGTACTTTCATCAGCGTGGCCAGTAAGTT < 41bp 1 0.562025131667105 1 0.0569708645343781 experiment 0.87594973666579 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11312065 chr2:11312073 nonsynonymous SNV 0.494 0 29 hm5C_associated_SNPs_39650 0 0 0 0 2 Ribosome 1 0.500231900793831 1 0.999536198412338 hm5C_site_38962 DeepMRMD:1;iRNA_m5C:0.999536198412338 38963 chr1 10425623 10425623 1 + G A UCEC 10425628 + 10425608 10425648 41 ACTACCTTTGAAAGCGCCATCACACCTAGCGAGAGCAGTGG ACTACCTTTGAAAGCACCATCACACCTAGCGAGAGCAGTGG < 41bp 1 0.0923720813924609 1 0.154969453811646 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10425628 chr1:10425623 nonsynonymous SNV 0.995 3 16 hm5C_associated_SNPs_39651 0 0 0 0 1 Cytosol 1 0.500231643921089 1 0.999536712157823 hm5C_site_38963 DeepMRMD:1;iRNA_m5C:0.999536712157823 38964 chr8 59059223 59059223 1 + C T UCEC 59059206 + 59059186 59059226 41 TCGGGCTCGGGGCACAAGCACAGCTCCCGCAACTGGCCGCC TCGGGCTCGGGGCACAAGCACAGCTCCCGCAACTGGCTGCC < 41bp 1 0.589522930656693 1 0.650628924369812 experiment 0.820954138686614 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM110B ENSG00000169122 CDS Human protein_coding chr8:59059206 chr8:59059223 nonsynonymous SNV 0.241 1 38 hm5C_associated_SNPs_39652 0 0 0 0 0 Cytosol 1 0.500231643921191 0.698742151260376 0.999536712157617 hm5C_site_38964 DeepMRMD:0.698742151260376;iRNA_m5C:0.999536712157617 38965 chr6 127607966 127607966 1 + C T UCEC 127607952 + 127607932 127607972 41 TCTATGTGTAAAAGGAGCTTCATGGCTTGGAAAGCGGTGTG TCTATGTGTAAAAGGAGCTTCATGGCTTGGAAAGTGGTGTG < 41bp 1 0.574579256469555 1 0.367025554180145 experiment 0.85084148706089 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF146 ENSG00000118518 CDS Human protein_coding chr6:127607952 chr6:127607966 nonsynonymous SNV 0.958 5 35 hm5C_associated_SNPs_39653 0 0 0 0 0 cytosol 1 0.500231643858426 1 0.999536712283148 hm5C_site_38965 DeepMRMD:1;iRNA_m5C:0.999536712283148 38966 chr16 29848067 29848067 1 + C T UCEC 29848064 + 29848044 29848084 41 CAGCCCTGCACCTCCGGGCTCGGCGGAACTTCCGGGACTTC CAGCCCTGCACCTCCGGGCTCGGTGGAACTTCCGGGACTTC < 41bp 1 0.491880474565016 1 0.47686979174614 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29848064 chr16:29848067 nonsynonymous SNV 0.669 2 24 hm5C_associated_SNPs_39654 0 0 1 0 1 Nucleus 1 0.50023190116118 1 0.99953619767764 hm5C_site_38966 DeepMRMD:1;iRNA_m5C:0.99953619767764 38967 chr7 21934380 21934380 1 + G A UCEC 21934397 + 21934377 21934417 41 TTCGGGAAATACGTATATCACTTGAACAACTGGACCTTAGT TTCAGGAAATACGTATATCACTTGAACAACTGGACCTTAGT < 41bp 1 0.211054743709502 1 0.389151066541672 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21934397 chr7:21934380 nonsynonymous SNV 0.997 0 4 hm5C_associated_SNPs_39655 0 0 0 0 1 nucleolus 1 0.500231747658853 1 0.999536504682295 hm5C_site_38967 DeepMRMD:1;iRNA_m5C:0.999536504682295 38968 chr11 581556 581556 1 + G A UCEC 581546 + 581526 581566 41 GCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCCGGATGGA GCCTGGATGAGCTTGTGGCCCGGAGCCCAGAGCCGGATGGA < 41bp 1 0.636422801861968 1 0.80035799741745 experiment 0.727154396276063 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581546 chr11:581556 nonsynonymous SNV 0.029 3 31 hm5C_associated_SNPs_39656 0 0 1 0 3 Nucleus 1 0.500231643890599 0.3992840051651 0.999536712218803 hm5C_site_38968 DeepMRMD:0.3992840051651;iRNA_m5C:0.999536712218803 38969 chr11 581556 581556 1 + G A UCEC 581559 + 581539 581579 41 TGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCG TGTGGCCCGGAGCCCAGAGCCGGATGGACACCCACAGGTCG < 41bp 1 0.527889902610384 1 0.891148328781128 experiment 0.944220194779231 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581559 chr11:581556 nonsynonymous SNV 0.029 3 18 hm5C_associated_SNPs_39658 0 0 1 0 3 Nucleus 1 0.500230573626613 0.217703342437744 0.999538852746773 hm5C_site_38969 DeepMRMD:0.217703342437744;iRNA_m5C:0.999538852746773 38970 chr19 4960698 4960698 1 + G A UCEC 4960706 + 4960686 4960726 41 TTTCGGGCACAGGTGTTCAGCTGCCCTGCCTGCCGCTACGA TTTCGGGCACAGATGTTCAGCTGCCCTGCCTGCCGCTACGA < 41bp 1 0.305787902767263 1 0.0509165823459625 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4960706 chr19:4960698 . 0.984 3 13 hm5C_associated_SNPs_39659 0 0 0 0 1 chromatin 1 0.500231643922633 1 0.999536712154734 hm5C_site_38970 DeepMRMD:1;iRNA_m5C:0.999536712154734 38971 chr2 64112923 64112923 1 + T C UCEC 64112920 + 64112900 64112940 41 CATAGATAATCTGGGTGCCACAGTGGATCTGTATATTCTTA CATAGATAATCTGGGTGCCACAGCGGATCTGTATATTCTTA < 41bp 1 0.614893299613007 1 0.511567294597626 experiment 0.770213400773986 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UGP2 ENSG00000169764 CDS Human protein_coding chr2:64112920 chr2:64112923 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_39660 0 0 1 0 1 Ribosome 1 0.500231643807956 0.976865410804748 0.999536712384088 hm5C_site_38971 DeepMRMD:0.976865410804748;iRNA_m5C:0.999536712384088 38972 chr9 131010984 131010984 1 + C T UCEC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACTGTGAGGGACCTCATGCCCAAGACCATCATG < 41bp 1 0.403840012788068 1 0.0765591859817505 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131010984 synonymous SNV . 0 11 hm5C_associated_SNPs_39661 0 0 1 0 1 Endoplasmic reticulum 1 0.500231641770395 1 0.99953671645921 hm5C_site_38972 DeepMRMD:1;iRNA_m5C:0.99953671645921 38973 chr17 80559265 80559265 1 + G A UCEC 80559263 + 80559243 80559283 41 GCGCCACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGC GCGCCACAACGGTGACCAGCCGAAGCAGCCGGAGCTGAAGC < 41bp 1 0.615508735640923 1 0.797695159912109 experiment 0.768982528718154 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559263 chr17:80559265 nonsynonymous SNV 0.032 1 23 hm5C_associated_SNPs_39663 0 0 1 0 1 Cytosol 1 0.500231729738004 0.404609680175782 0.999536540523992 hm5C_site_38973 DeepMRMD:0.404609680175782;iRNA_m5C:0.999536540523992 38974 chr17 80559265 80559265 1 + G A UCEC 80559268 + 80559248 80559288 41 ACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC ACAACGGTGACCAGCCGAAGCAGCCGGAGCTGAAGCGGATC < 41bp 1 0.355829635788969 1 0.584988057613373 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559268 chr17:80559265 nonsynonymous SNV 0.032 1 18 hm5C_associated_SNPs_39664 0 0 1 0 1 Cytosol 1 0.5002316439209 0.830023884773254 0.999536712158199 hm5C_site_38974 DeepMRMD:0.830023884773254;iRNA_m5C:0.999536712158199 38975 chr17 80559265 80559265 1 + G A UCEC 80559277 + 80559257 80559297 41 ACCAGCCGGAGCAGCCGGAGCTGAAGCGGATCAAGACAGAA ACCAGCCGAAGCAGCCGGAGCTGAAGCGGATCAAGACAGAA < 41bp 1 0.505337732940889 1 0.528499960899353 experiment 0.989324534118222 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559277 chr17:80559265 nonsynonymous SNV 0.032 1 9 hm5C_associated_SNPs_39665 0 0 1 0 1 Cytosol 1 0.500231643928004 0.943000078201294 0.999536712143992 hm5C_site_38975 DeepMRMD:0.943000078201294;iRNA_m5C:0.999536712143992 38976 chr11 65161541 65161541 1 + G A UCEC 65161556 + 65161536 65161576 41 GGAACGTGTTCTTCCCAAAGCGGCGGGAGCTCCAGGTGAGG GGAACATGTTCTTCCCAAAGCGGCGGGAGCTCCAGGTGAGG < 41bp 1 0.667883560004943 1 0.53642201423645 experiment 0.664232879990115 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65161556 chr11:65161541 nonsynonymous SNV 0.991 3 6 hm5C_associated_SNPs_39666 0 0 1 0 2 Ribosome 1 0.500231639414557 0.9271559715271 0.999536721170885 hm5C_site_38976 DeepMRMD:0.9271559715271;iRNA_m5C:0.999536721170885 38977 chr16 88780139 88780139 1 + C T UCEC 88780149 + 88780129 88780169 41 TTTCTACAACCGCCTGTTCTCCGTTCCTTCTGTCTTCACAC TTTCTACAACTGCCTGTTCTCCGTTCCTTCTGTCTTCACAC < 41bp 1 0.186371658462977 1 0.15420264005661 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780149 chr16:88780139 nonsynonymous SNV 0.521 3 11 hm5C_associated_SNPs_39667 0 0 0 0 2 Cytosol 1 0.500231621711337 1 0.999536756577327 hm5C_site_38977 DeepMRMD:1;iRNA_m5C:0.999536756577327 38978 chr22 46681154 46681154 1 + C T UCEC 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGTGCTGAC < 41bp 1 0.110955262912827 1 0.13754877448082 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681154 nonsynonymous SNV 0.004 2 35 hm5C_associated_SNPs_39668 0 0 1 0 2 Ribosome 1 0.500232936362846 1 0.999534127274309 hm5C_site_38978 DeepMRMD:1;iRNA_m5C:0.999534127274309 38979 chr6 15496756 15496756 1 + C T UCEC 15496746 + 15496726 15496766 41 GGGCGGCAGCTGCGGGAGGGCCTGCAGCTGCGGGAGGGGCT GGGCGGCAGCTGCGGGAGGGCCTGCAGCTGTGGGAGGGGCT < 41bp 1 0.0615671104283526 1 0.286925345659256 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15496746 chr6:15496756 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_39669 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38979 DeepMRMD:1;iRNA_m5C:0.999536712157815 38980 chr6 15496756 15496756 1 + C T UCEC 15496765 + 15496745 15496785 41 GCCTGCAGCTGCGGGAGGGGCTGCGGAACTCCAAGAGGAGA GCCTGCAGCTGTGGGAGGGGCTGCGGAACTCCAAGAGGAGA < 41bp 1 0.62902244053037 1 0.427247226238251 experiment 0.74195511893926 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15496765 chr6:15496756 nonsynonymous SNV 0.999 5 12 hm5C_associated_SNPs_39670 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_38980 DeepMRMD:1;iRNA_m5C:0.999536712157812 38981 chr19 7670125 7670125 1 + G A UCEC 7670120 + 7670100 7670140 41 ATGCCCCCACAGAGCACGTGCCCCCGGAGCTGTGGGAGCCC ATGCCCCCACAGAGCACGTGCCCCCAGAGCTGTGGGAGCCC < 41bp 1 0.0498197841801849 1 0.024714320898056 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7670120 chr19:7670125 synonymous SNV . 0 26 hm5C_associated_SNPs_39671 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_38981 DeepMRMD:1;iRNA_m5C:0.999536712157815 38982 chr19 7670125 7670125 1 + G A UCEC 7670124 + 7670104 7670144 41 CCCCACAGAGCACGTGCCCCCGGAGCTGTGGGAGCCCTTCT CCCCACAGAGCACGTGCCCCCAGAGCTGTGGGAGCCCTTCT < 41bp 1 0.528927886931108 1 0.791458964347839 experiment 0.942144226137785 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7670124 chr19:7670125 synonymous SNV . 0 22 hm5C_associated_SNPs_39672 0 0 1 0 1 nucleus 1 0.500231643921092 0.417082071304322 0.999536712157815 hm5C_site_38982 DeepMRMD:0.417082071304322;iRNA_m5C:0.999536712157815 38983 chr19 33465005 33465005 1 + C T UCEC 33465022 + 33465002 33465042 41 ACCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT ACCTGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT < 41bp 1 0.163006106613217 1 0.106115251779556 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465022 chr19:33465005 nonsynonymous SNV 0.347 0 4 hm5C_associated_SNPs_39673 0 0 1 0 1 cytosol 1 0.500231644043765 1 0.999536711912471 hm5C_site_38983 DeepMRMD:1;iRNA_m5C:0.999536711912471 38984 chr11 67069239 67069239 1 + G A UCEC 67069243 + 67069223 67069263 41 GACCAACACCCGGCCCGGTGCCCGCCCTCCTCCCCAGGCCA GACCAACACCCGGCCCAGTGCCCGCCCTCCTCCCCAGGCCA < 41bp 1 0.214907493009097 1 0.205197095870972 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKRD13D ENSG00000172932 CDS Human protein_coding chr11:67069243 chr11:67069239 nonsynonymous SNV 0.227 2 17 hm5C_associated_SNPs_39674 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_38984 DeepMRMD:1;iRNA_m5C:0.999536712157815 38985 chr19 45851959 45851959 1 + C T UCEC 45851950 + 45851930 45851970 41 CAGACCTTCTCCATGATGCCCTGCAGATCCGGGAGCAGACG CAGACCTTCTCCATGATGCCCTGCAGATCTGGGAGCAGACG < 41bp 1 0.468128539530429 1 0.102408319711685 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851950 chr19:45851959 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_39675 0 0 0 0 2 nucleolus 1 0.500231643921077 1 0.999536712157845 hm5C_site_38985 DeepMRMD:1;iRNA_m5C:0.999536712157845 38986 chr7 157159206 157159206 1 + G A UCEC 157159209 + 157159189 157159229 41 TTTTTAGCTAAGAAACGGGACATCTATGACAAATATGGCAA TTTTTAGCTAAGAAACGAGACATCTATGACAAATATGGCAA < 41bp 1 0.0482838276791669 1 0.0855221450328827 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJB6 ENSG00000105993 CDS Human protein_coding chr7:157159209 chr7:157159206 synonymous SNV . 0 18 hm5C_associated_SNPs_39676 0 0 1 0 2 Ribosome 1 0.500231643506994 1 0.999536712986012 hm5C_site_38986 DeepMRMD:1;iRNA_m5C:0.999536712986012 38987 chr6 142519642 142519642 1 + C T UCEC 142519636 + 142519616 142519656 41 CACTCAGCCAACTCAGCCATCATCATCTTCAACTTATGACC CACTCAGCCAACTCAGCCATCATCATTTTCAACTTATGACC < 41bp 1 0.610289304494515 1 0.119728684425354 experiment 0.77942139101097 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519636 chr6:142519642 nonsynonymous SNV 0.989 1 27 hm5C_associated_SNPs_39677 0 0 1 0 1 Ribosome 1 0.500231641852333 1 0.999536716295335 hm5C_site_38987 DeepMRMD:1;iRNA_m5C:0.999536716295335 38988 chr12 52695788 52695788 1 + G A UCEC 52695783 + 52695763 52695803 41 GCCCGGCCGCTGCTGCATCACCGCCGCCCCCTACCGTGGCA GCCCGGCCGCTGCTGCATCACCGCCACCCCCTACCGTGGCA < 41bp 1 0.379321289784384 1 0.0932632088661194 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695783 chr12:52695788 nonsynonymous SNV 0.312 2 26 hm5C_associated_SNPs_39678 0 0 0 0 1 nucleus 1 0.500231643929958 1 0.999536712140084 hm5C_site_38988 DeepMRMD:1;iRNA_m5C:0.999536712140084 38989 chr19 49132407 49132407 1 + G A UCEC 49132399 + 49132379 49132419 41 AGAACCCCTGCCCATCCTGTCCCTCAACGGTGGGGGCCCAG AGAACCCCTGCCCATCCTGTCCCTCAACAGTGGGGGCCCAG < 41bp 1 0.0615963181201695 1 0.186941385269165 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49132399 chr19:49132407 nonsynonymous SNV 0.920 1 29 hm5C_associated_SNPs_39679 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38989 DeepMRMD:1;iRNA_m5C:0.999536712157815 38990 chr12 49724724 49724724 1 + C T UCEC 49724720 + 49724700 49724740 41 CTTTGAGACCCCCAGCAGGCCAGGCAGGTAAGGAGTTGGCT CTTTGAGACCCCCAGCAGGCCAGGTAGGTAAGGAGTTGGCT < 41bp 1 0.440854295234705 1 0.118706464767456 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TROAP ENSG00000135451 CDS Human protein_coding chr12:49724720 chr12:49724724 nonsynonymous SNV 0.631 2 25 hm5C_associated_SNPs_39680 0 0 1 0 1 Ribosome 1 0.500231649743671 1 0.999536700512658 hm5C_site_38990 DeepMRMD:1;iRNA_m5C:0.999536700512658 38991 chr19 48675256 48675256 1 + C T UCEC 48675236 + 48675216 48675256 41 CTGGCGCGCTGCCGCTGGGCCAGTGCGCCCCCGCTCTACAC CTGGCGCGCTGCCGCTGGGCCAGTGCGCCCCCGCTCTACAT < 41bp 1 0.607226650393098 1 0.254834979772568 experiment 0.785546699213804 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control C19orf68 ENSG00000185453 CDS Human protein_coding chr19:48675236 chr19:48675256 nonsynonymous SNV 0.981 1 41 hm5C_associated_SNPs_39681 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921278 1 0.999536712157445 hm5C_site_38991 DeepMRMD:1;iRNA_m5C:0.999536712157445 38992 chr19 54964834 54964834 1 + A C UCEC 54964832 + 54964812 54964852 41 CAACACCAAGGGACTCTGAACCAGGTAACATCCTAGCCCAG CAACACCAAGGGACTCTGAACCCGGTAACATCCTAGCCCAG < 41bp 1 0.245296676404394 1 0.429027557373047 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54964832 chr19:54964834 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_39682 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_38992 DeepMRMD:1;iRNA_m5C:0.999536712157815 38993 chr11 61490976 61490976 1 + G A UCEC 61490991 + 61490971 61491011 41 CCCACGGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG CCCACAGGCCGCACCTTTGTCAAGCTGAGAGCCACCAAGAG < 41bp 1 0.432659590751087 1 0.844815611839294 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490991 chr11:61490976 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_39683 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643784682 0.310368776321412 0.999536712430637 hm5C_site_38993 DeepMRMD:0.310368776321412;iRNA_m5C:0.999536712430637 38994 chr16 56867232 56867232 1 + G A UCEC 56867224 + 56867204 56867244 41 GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCGCTGCCA GCAGTTGCCTTTCTTTTCCGCATGGAGCAGCTGCGCTGCCA < 41bp 1 0.471531162374459 1 0.20397824048996 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56867224 chr16:56867232 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_39685 0 0 1 0 1 Nucleus 1 0.500231643939559 1 0.999536712120882 hm5C_site_38994 DeepMRMD:1;iRNA_m5C:0.999536712120882 38995 chr20 37662900 37662900 1 + G A UCEC 37662905 + 37662885 37662925 41 CTACATGAGAGATGTGACTGCCATTGAATCGGCCTGGCTGT CTACATGAGAGATGTAACTGCCATTGAATCGGCCTGGCTGT < 41bp 1 0.0605353010304001 1 0.07066410779953 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX35 ENSG00000101452 CDS Human protein_coding chr20:37662905 chr20:37662900 synonymous SNV . 0 16 hm5C_associated_SNPs_39686 0 0 1 0 1 Endoplasmic reticulum 1 0.500231820372871 1 0.999536359254259 hm5C_site_38995 DeepMRMD:1;iRNA_m5C:0.999536359254259 38996 chr1 39987153 39987153 1 + G A UCEC 39987147 + 39987127 39987167 41 CTTCAGGGCCAGTCCGAGTCCCATCCGCACCCCTCGGGCAG CTTCAGGGCCAGTCCGAGTCCCATCCACACCCCTCGGGCAG < 41bp 1 0.112258803085245 1 0.484523117542267 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP8A ENSG00000183682 CDS Human protein_coding chr1:39987147 chr1:39987153 nonsynonymous SNV 0.010 2 27 hm5C_associated_SNPs_39687 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921089 1 0.999536712157822 hm5C_site_38996 DeepMRMD:1;iRNA_m5C:0.999536712157822 38997 chr1 39987153 39987153 1 + G A UCEC 39987148 + 39987128 39987168 41 TTCAGGGCCAGTCCGAGTCCCATCCGCACCCCTCGGGCAGT TTCAGGGCCAGTCCGAGTCCCATCCACACCCCTCGGGCAGT < 41bp 1 0.0996351651396926 1 0.140620976686478 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP8A ENSG00000183682 CDS Human protein_coding chr1:39987148 chr1:39987153 nonsynonymous SNV 0.010 2 26 hm5C_associated_SNPs_39688 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643919446 1 0.999536712161109 hm5C_site_38997 DeepMRMD:1;iRNA_m5C:0.999536712161109 38998 chr2 27277609 27277609 1 + G A UCEC 27277595 + 27277575 27277615 41 TCACTTCCTGCCATGGGCTTCGAGAAGATCGAGAGCCCCGT TCACTTCCTGCCATGGGCTTCGAGAAGATCGAGAACCCCGT < 41bp 1 0.633426465096045 1 0.822610020637512 experiment 0.73314706980791 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27277595 chr2:27277609 synonymous SNV . 0 35 hm5C_associated_SNPs_39689 0 0 1 0 0 Cytosol 1 0.500231643921105 0.354779958724976 0.999536712157791 hm5C_site_38998 DeepMRMD:0.354779958724976;iRNA_m5C:0.999536712157791 38999 chr9 33366678 33366678 1 + C T UCEC 33366677 + 33366657 33366697 41 CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTT CCTCCCATGAACAGAGACCACTGCCGGATCATCCATGACTT < 41bp 1 0.514225892469472 1 0.0985100269317627 experiment 0.971548215061057 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366677 chr9:33366678 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_39690 0 0 1 0 2 Nucleus 1 0.500231360033716 1 0.999537279932568 hm5C_site_38999 DeepMRMD:1;iRNA_m5C:0.999537279932568 39000 chrX 153677069 153677069 1 + G A UCEC 153677085 + 153677065 153677105 41 CTGCGGCAGGAGTGGGAAGCCAAGCAGGAGAAGATCAAGAG CTGCAGCAGGAGTGGGAAGCCAAGCAGGAGAAGATCAAGAG < 41bp 1 0.666089201015767 1 0.764652013778687 experiment 0.667821597968467 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout FAM50A ENSG00000071859 CDS Human protein_coding chrX:153677085 chrX:153677069 nonsynonymous SNV 0.998 3 5 hm5C_associated_SNPs_39691 0 0 1 0 1 Ribosome 1 0.500231643921087 0.470695972442626 0.999536712157825 hm5C_site_39000 DeepMRMD:0.470695972442626;iRNA_m5C:0.999536712157825 39001 chr22 38209490 38209490 1 + C T UCEC 38209473 + 38209453 38209493 41 TCACTGCCTCCCTCCAGGCCCTGCTGACCCCAGAGGACGCA TCACTGCCTCCCTCCAGGCCCTGCTGACCCCAGAGGATGCA < 41bp 1 0.32339922806105 1 0.0277171730995178 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GCAT ENSG00000100116 CDS Human protein_coding chr22:38209473 chr22:38209490 synonymous SNV . 0 38 hm5C_associated_SNPs_39692 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_39001 DeepMRMD:1;iRNA_m5C:0.999536712157816 39002 chr2 234354289 234354289 1 + G A UCEC 234354284 + 234354264 234354304 41 CTTAGTGTCAGCTGGGAGTGCTGCCGCTCGGCACAGGGAAC CTTAGTGTCAGCTGGGAGTGCTGCCACTCGGCACAGGGAAC < 41bp 1 0.213340935938927 1 0.165090143680573 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKD ENSG00000077044 CDS Human protein_coding chr2:234354284 chr2:234354289 synonymous SNV . 0 26 hm5C_associated_SNPs_39693 0 0 1 0 0 Nucleus 1 0.500231600860936 1 0.999536798278128 hm5C_site_39002 DeepMRMD:1;iRNA_m5C:0.999536798278128 39003 chr17 47004378 47004378 1 + G A UCEC 47004386 + 47004366 47004406 41 CCCTCTTGATGCGCCTGGGACTGATACGTCAGAAAGTGCTG CCCTCTTGATGCACCTGGGACTGATACGTCAGAAAGTGCTG < 41bp 1 0.221143231871492 1 0.100110977888107 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2Z ENSG00000159202 CDS Human protein_coding chr17:47004386 chr17:47004378 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_39694 0 0 1 0 1 Ribosome 1 0.500199745299496 1 0.999600509401009 hm5C_site_39003 DeepMRMD:1;iRNA_m5C:0.999600509401009 39004 chr19 2097277 2097277 1 + A G UCEC 2097268 + 2097248 2097288 41 CAGCCCGGGAGAAGCTGGACCAAGTGGCGACAGCAGTGTAC CAGCCCGGGAGAAGCTGGACCAAGTGGCGGCAGCAGTGTAC < 41bp 1 0.647157018132314 1 0.472919464111328 experiment 0.705685963735372 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IZUMO4 ENSG00000099840 CDS Human protein_coding chr19:2097268 chr19:2097277 nonsynonymous SNV 0.009 0 30 hm5C_associated_SNPs_39695 0 0 1 0 2 Cytosol 1 0.500231643936757 1 0.999536712126487 hm5C_site_39004 DeepMRMD:1;iRNA_m5C:0.999536712126487 39005 chr6 15511626 15511626 1 + C T UCEC 15511609 + 15511589 15511629 41 CCAATGGCACCCCAGGGCTGCAGATGCTGGAAAGCAACGTC CCAATGGCACCCCAGGGCTGCAGATGCTGGAAAGCAATGTC < 41bp 1 0.179397561111866 1 0.34252804517746 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JARID2 ENSG00000008083 CDS Human protein_coding chr6:15511609 chr6:15511626 synonymous SNV . 0 38 hm5C_associated_SNPs_39696 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39005 DeepMRMD:1;iRNA_m5C:0.999536712157815 39006 chr20 55982889 55982889 1 + A T UCEC 55982907 + 55982887 55982927 41 TGACAGGATGCAGTGAGGGGCGTTCCTGCCCCGAGGACTGT TGTCAGGATGCAGTGAGGGGCGTTCCTGCCCCGAGGACTGT < 41bp 1 0.0339153613363879 1 0.0582188069820404 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control RBM38 ENSG00000132819 CDS Human protein_coding chr20:55982907 chr20:55982889 nonsynonymous SNV 0.995 3 3 hm5C_associated_SNPs_39697 0 0 1 0 0 Ribosome 1 0.500231643921086 1 0.999536712157828 hm5C_site_39006 DeepMRMD:1;iRNA_m5C:0.999536712157828 39007 chr3 142741791 142741791 1 + A G UCEC 142741800 + 142741780 142741820 41 TATGATGGAACATACGCTTCCCCCACCTCCATCCGGACTGC TATGATGGAACGTACGCTTCCCCCACCTCCATCCGGACTGC < 41bp 1 0.642305705686835 1 0.0450689196586609 experiment 0.715388588626329 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142741800 chr3:142741791 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_39699 0 0 1 0 1 Cytosol 1 0.500231642978663 1 0.999536714042674 hm5C_site_39007 DeepMRMD:1;iRNA_m5C:0.999536714042674 39008 chr1 32626278 32626278 1 + C A UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAAATGTTCCATCCTTAATCCTTTGTTAACGTGA < 41bp 1 0.157517562801082 1 0.488567173480988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626278 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_39700 0 0 1 0 3 Cytosol 1 0.500231720373881 1 0.999536559252238 hm5C_site_39008 DeepMRMD:1;iRNA_m5C:0.999536559252238 39009 chr9 19336381 19336381 1 + T G UCEC 19336394 + 19336374 19336414 41 AAAAGACTGTGCAAAGGTCACAGGTCTCCTCAATATCAGGT AAAAGACGGTGCAAAGGTCACAGGTCTCCTCAATATCAGGT < 41bp 1 0.396443845983891 1 0.228658318519592 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336394 chr9:19336381 synonymous SNV . 0 8 hm5C_associated_SNPs_39701 0 0 1 0 1 Nucleus 1 0.500231651709633 1 0.999536696580734 hm5C_site_39009 DeepMRMD:1;iRNA_m5C:0.999536696580734 39010 chr19 7598511 7598511 1 + G A UCEC 7598504 + 7598484 7598524 41 GGCAAGTTCCGCCGCGGGAGCGGCTCGGCCTGCAGCCTTCT GGCAAGTTCCGCCGCGGGAGCGGCTCGACCTGCAGCCTTCT < 41bp 1 0.417368330181266 1 0.0668114125728607 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCOLN1 ENSG00000090674;ENSG00000268614 CDS Human other chr19:7598504 chr19:7598511 nonsynonymous SNV 0.789 1 28 hm5C_associated_SNPs_39702 0 0 0 0 1 chromatin 1 0.500231645299311 1 0.999536709401377 hm5C_site_39010 DeepMRMD:1;iRNA_m5C:0.999536709401377 39011 chr2 26357872 26357872 1 + G A UCEC 26357865 + 26357845 26357885 41 CAGCAGTGGAGGAGGCGTGACAGGCTGGAAGAGCAAATGCT CAGCAGTGGAGGAGGCGTGACAGGCTGAAAGAGCAAATGCT < 41bp 1 0.538560872398692 1 0.673292875289917 experiment 0.922878255202616 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAB10 ENSG00000084733 CDS Human protein_coding chr2:26357865 chr2:26357872 stopgain 1.000 1 28 hm5C_associated_SNPs_39704 0 0 1 0 1 Ribosome 1 0.500231654588785 0.653414249420166 0.99953669082243 hm5C_site_39011 DeepMRMD:0.653414249420166;iRNA_m5C:0.99953669082243 39012 chr9 97686343 97686343 1 + A G UCEC 97686328 + 97686308 97686348 41 GGGAACCATCTCTGTGGGACCCGCCTCTGCCATGAAATTGC GGGAACCATCTCTGTGGGACCCGCCTCTGCCATGAGATTGC < 41bp 1 0.100798527609131 1 0.116914391517639 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97686328 chr9:97686343 synonymous SNV . 0 36 hm5C_associated_SNPs_39705 0 0 1 0 1 Cytosol 1 0.500231631673808 1 0.999536736652383 hm5C_site_39012 DeepMRMD:1;iRNA_m5C:0.999536736652383 39013 chr20 31021634 31021634 1 + C T UCEC 31021621 + 31021601 31021641 41 TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATCGTCAGTC TCCTTTCCCGAAAAGAAGCCCCGGCTTGAAGATTGTCAGTC < 41bp 1 0.148777769668117 1 0.171661615371704 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021621 chr20:31021634 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_39706 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39013 DeepMRMD:1;iRNA_m5C:0.999536712157815 39014 chr16 3339561 3339561 1 + G A UCEC 3339545 + 3339525 3339565 41 GGTCGCAAGGGGATTGGGCGCCTCCCCCAGAGGGTGGAATG GGTCGCAAGGGGATTGGGCGCCTCCCCCAGAGGGTGAAATG < 41bp 1 0.0697868890674379 1 0.0605857670307159 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3339545 chr16:3339561 nonsynonymous SNV 0.000 0 37 hm5C_associated_SNPs_39707 0 0 1 0 0 Cytosol 1 0.500231643920807 1 0.999536712158386 hm5C_site_39014 DeepMRMD:1;iRNA_m5C:0.999536712158386 39015 chr16 3339561 3339561 1 + G A UCEC 3339549 + 3339529 3339569 41 GCAAGGGGATTGGGCGCCTCCCCCAGAGGGTGGAATGGAGC GCAAGGGGATTGGGCGCCTCCCCCAGAGGGTGAAATGGAGC < 41bp 1 0.590726011950746 1 0.56609570980072 experiment 0.818547976098508 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3339549 chr16:3339561 nonsynonymous SNV 0.000 0 33 hm5C_associated_SNPs_39708 0 0 1 0 0 Cytosol 1 0.500231643923716 0.86780858039856 0.999536712152569 hm5C_site_39015 DeepMRMD:0.86780858039856;iRNA_m5C:0.999536712152569 39016 chr12 53516969 53516969 1 + C T UCEC 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCCTGGGGTTCTTCTATCCTGTCATGCTGAT < 41bp 1 0.108186500863127 1 0.054341733455658 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516969 synonymous SNV . 0 30 hm5C_associated_SNPs_39709 0 0 0 0 1 cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_39016 DeepMRMD:1;iRNA_m5C:0.999536712157815 39017 chr16 29989111 29989111 1 + G A UCEC 29989108 + 29989088 29989128 41 GCCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGA GCCACCATGCCAGCTGGGGGCCGAGCCGGGAGCCTGAAGGA < 41bp 1 0.32690908986343 1 0.503608584403992 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989108 chr16:29989111 synonymous SNV . 0 24 hm5C_associated_SNPs_39710 0 0 1 0 0 Nucleus 1 0.500231643939591 0.992782831192016 0.999536712120817 hm5C_site_39017 DeepMRMD:0.992782831192016;iRNA_m5C:0.999536712120817 39018 chr16 29989111 29989111 1 + G A UCEC 29989109 + 29989089 29989129 41 CCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGAC CCACCATGCCAGCTGGGGGCCGAGCCGGGAGCCTGAAGGAC < 41bp 1 0.337723094434654 1 0.515426278114319 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989109 chr16:29989111 synonymous SNV . 0 23 hm5C_associated_SNPs_39711 0 0 1 0 0 Nucleus 1 0.500231643920883 0.969147443771362 0.999536712158233 hm5C_site_39018 DeepMRMD:0.969147443771362;iRNA_m5C:0.999536712158233 39019 chr6 44274733 44274733 1 + C T UCEC 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGTCGAGCTGTGCATTTCTCCATGGAGATCTTAAAGGCACC < 41bp 1 0.440030453891191 1 0.849573612213135 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274733 nonsynonymous SNV 0.647 4 14 hm5C_associated_SNPs_39712 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.30085277557373 0.999536712157816 hm5C_site_39019 DeepMRMD:0.30085277557373;iRNA_m5C:0.999536712157816 39020 chrX 152958756 152958756 1 + C T UCEC 152958738 + 152958718 152958758 41 GTGTGGATAGATGCGGGGACCCAGATTTTCTTTTCTTACGC GTGTGGATAGATGCGGGGACCCAGATTTTCTTTTCTTATGC < 41bp 1 0.568779784614126 1 0.143645882606506 experiment 0.862440430771748 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958738 chrX:152958756 synonymous SNV . 0 39 hm5C_associated_SNPs_39713 1 0 1 0 2 Ribosome 1 0.500231644437552 1 0.999536711124896 hm5C_site_39020 DeepMRMD:1;iRNA_m5C:0.999536711124896 not specified not specified 39021 chr19 15224385 15224385 1 + C T UCEC 15224376 + 15224356 15224396 41 CCTGTCTCCCTTCAGATCCCCGCCTGCCCCGACAATCTCCA CCTGTCTCCCTTCAGATCCCCGCCTGCCCTGACAATCTCCA < 41bp 1 0.185318205791803 1 0.0871029794216156 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15224376 chr19:15224385 stopgain 0.003 0 30 hm5C_associated_SNPs_39715 0 0 0 0 1 exosome 1 0.500258582570417 1 0.999482834859165 hm5C_site_39021 DeepMRMD:1;iRNA_m5C:0.999482834859165 39022 chr7 44733492 44733492 1 + G A UCEC 44733483 + 44733463 44733503 41 CCCTACCCCACTGACGTGGCCCGAGTGGTGAATGCCCCCAT CCCTACCCCACTGACGTGGCCCGAGTGGTAAATGCCCCCAT < 41bp 1 0.392153047860407 1 0.348213583230972 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44733483 chr7:44733492 synonymous SNV . 0 30 hm5C_associated_SNPs_39716 0 0 1 0 1 Nucleus 1 0.500231642310606 1 0.999536715378788 hm5C_site_39022 DeepMRMD:1;iRNA_m5C:0.999536715378788 39023 chr17 27938952 27938952 1 + A G UCEC 27938953 + 27938933 27938973 41 GCCATCACTGCAGAAGAATACTTCAACCCCAACTTTGAGCT GCCATCACTGCAGAAGAATGCTTCAACCCCAACTTTGAGCT < 41bp 1 0.28514821894224 1 0.300507992506027 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27938953 chr17:27938952 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_39718 0 0 1 0 2 chromatin 1 0.500231646936138 1 0.999536706127724 hm5C_site_39023 DeepMRMD:1;iRNA_m5C:0.999536706127724 39024 chr17 5264516 5264516 1 + G A UCEC 5264520 + 5264500 5264540 41 CAGGAGCATTTAGACAGCACCCGTGGCTCAGTTCATTCCTT CAGGAGCATTTAGACAACACCCGTGGCTCAGTTCATTCCTT < 41bp 1 0.169104665157124 1 0.337795794010162 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5264520 chr17:5264516 nonsynonymous SNV 0.985 2 17 hm5C_associated_SNPs_39719 0 0 1 0 1 Ribosome 1 0.500231667689835 1 0.999536664620331 hm5C_site_39024 DeepMRMD:1;iRNA_m5C:0.999536664620331 39025 chr18 77102328 77102328 1 + C T UCEC 77102335 + 77102315 77102355 41 CAAAAGTTCACATCTCGTGTCTAGAACACAAGATATTCATA CAAAAGTTCACATTTCGTGTCTAGAACACAAGATATTCATA < 41bp 1 0.31799288472059 1 0.426186263561249 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP9B ENSG00000166377 CDS Human protein_coding chr18:77102335 chr18:77102328 nonsynonymous SNV 0.326 4 14 hm5C_associated_SNPs_39720 0 0 0 0 2 Endoplasmic reticulum 1 0.50023320213269 1 0.999533595734619 hm5C_site_39025 DeepMRMD:1;iRNA_m5C:0.999533595734619 39026 chrX 153035884 153035884 1 + C A UCEC 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CTCCTTTTATGACTGCAGTGCCGTCCAGGCATTGGAGGCGG < 41bp 1 0.0331080285996995 1 0.112483710050583 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035884 synonymous SNV . 0 31 hm5C_associated_SNPs_39721 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_39026 DeepMRMD:1;iRNA_m5C:0.999536712157816 39027 chr1 10435342 10435342 1 + G A UCEC 10435355 + 10435335 10435375 41 GCACAAAGCACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC GCACAAAACACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC < 41bp 1 0.0400958637322343 1 0.0515201389789581 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10435355 chr1:10435342 synonymous SNV . 0 8 hm5C_associated_SNPs_39722 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39027 DeepMRMD:1;iRNA_m5C:0.999536712157815 39028 chr3 184045029 184045029 1 + G A UCEC 184045016 + 184044996 184045036 41 TCTTCCAGGAGTAGCTTGAGCCGAGAACGAGGCGAGAAAGC TCTTCCAGGAGTAGCTTGAGCCGAGAACGAGGCAAGAAAGC < 41bp 1 0.295159129283435 1 0.493088245391846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184045016 chr3:184045029 nonsynonymous SNV 0.999 0 34 hm5C_associated_SNPs_39723 0 0 1 0 1 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_39028 DeepMRMD:1;iRNA_m5C:0.999536712157818 39029 chr5 147796677 147796677 1 + G A UCEC 147796689 + 147796669 147796709 41 ACATCCACGACAACAATCACCATCATCCAGATGACTCAGAC ACATCCACAACAACAATCACCATCATCCAGATGACTCAGAC < 41bp 1 0.391008812789741 1 0.097696840763092 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147796689 chr5:147796677 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_39724 0 0 1 0 1 Ribosome 1 0.499827964501965 1 1 hm5C_site_39029 DeepMRMD:1;iRNA_m5C:1 39030 chr12 2783736 2783736 1 + C T UCEC 2783718 + 2783698 2783738 41 GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGCGG GCCCTGCAGGGAACCTAGAACAAGCCAATGAGGAGCTGTGG < 41bp 1 0.279311695993514 1 0.849779605865479 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2783718 chr12:2783736 nonsynonymous SNV 0.948 5 39 hm5C_associated_SNPs_39725 0 0 0 0 3 Cytosol 1 0.50023164388183 0.300440788269042 0.999536712236341 hm5C_site_39030 DeepMRMD:0.300440788269042;iRNA_m5C:0.999536712236341 39031 chr1 39898742 39898742 1 + G A UCEC 39898725 + 39898705 39898745 41 GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTCGACA GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTCAACA < 41bp 1 0.231989300754101 1 0.95836079120636 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39898725 chr1:39898742 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_39726 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643892787 0.0832784175872801 0.999536712214427 hm5C_site_39031 DeepMRMD:0.0832784175872801;iRNA_m5C:0.999536712214427 39032 chr2 60987388 60987388 1 + A C UCEC 60987390 + 60987370 60987410 41 AATTAATTGACGCCATGAAACCATTTGGAGTGTTTGAAGAT AATTAATTGACGCCATGACACCATTTGGAGTGTTTGAAGAT < 41bp 1 0.0749940966139954 1 0.0652489066123962 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLG ENSG00000115421 CDS Human protein_coding chr2:60987390 chr2:60987388 nonsynonymous SNV 0.999 2 19 hm5C_associated_SNPs_39727 0 0 1 0 1 chromatin 1 0.500231643921125 1 0.99953671215775 hm5C_site_39032 DeepMRMD:1;iRNA_m5C:0.99953671215775 39033 chr4 57181807 57181807 1 + G A UCEC 57181825 + 57181805 57181845 41 CCGCCAGTCAATGCAAAGTTCTCTATTATGCCTGCCTGGCA CCACCAGTCAATGCAAAGTTCTCTATTATGCCTGCCTGGCA < 41bp 1 0.51905159252865 1 0.894907355308533 experiment 0.9618968149427 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57181825 chr4:57181807 synonymous SNV . 0 3 hm5C_associated_SNPs_39728 0 0 0 0 0 cytosol 1 0.500231643950573 0.210185289382934 0.999536712098854 hm5C_site_39033 DeepMRMD:0.210185289382934;iRNA_m5C:0.999536712098854 39034 chr1 158988035 158988035 1 + C T UCEC 158988036 + 158988016 158988056 41 CAGAACCCGAAAACAGTGGCCAAATGTCAGGTAACTCCCAG CAGAACCCGAAAACAGTGGTCAAATGTCAGGTAACTCCCAG < 41bp 1 0.396919986824065 1 0.815744519233704 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout IFI16 ENSG00000163565 CDS Human protein_coding chr1:158988036 chr1:158988035 nonsynonymous SNV 0.001 0 20 hm5C_associated_SNPs_39729 0 0 0 0 1 exosome 1 0.500232794469658 0.368510961532592 0.999534411060684 hm5C_site_39034 DeepMRMD:0.368510961532592;iRNA_m5C:0.999534411060684 39035 chr7 151817986 151817986 1 + G A UCEC 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCACTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG < 41bp 1 0.416589597822684 1 0.274689376354218 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151817986 nonsynonymous SNV 0.999 2 4 hm5C_associated_SNPs_39730 0 0 1 0 2 chromatin 1 0.500231643909193 1 0.999536712181613 hm5C_site_39035 DeepMRMD:1;iRNA_m5C:0.999536712181613 39036 chr12 110457001 110457001 1 + G A UCEC 110457008 + 110456988 110457028 41 GTCACCACCGAACGCTTCGACCTTTCCCAAGAAATGGAGCG GTCACCACCGAACACTTCGACCTTTCCCAAGAAATGGAGCG < 41bp 1 0.0110707274003471 1 0.0631484687328339 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110457008 chr12:110457001 nonsynonymous SNV 0.735 0 14 hm5C_associated_SNPs_39731 0 0 1 0 1 chromatin 1 0.500231643928581 1 0.999536712142838 hm5C_site_39036 DeepMRMD:1;iRNA_m5C:0.999536712142838 39037 chr2 162226654 162226654 1 + G T UCEC 162226642 + 162226622 162226662 41 TCAGTGTGGAGGCAGTTGATCCAGTGTTCCAAGCTAAAATG TCAGTGTGGAGGCAGTTGATCCAGTGTTCCAATCTAAAATG < 41bp 1 0.543623499556453 1 0.343636393547058 experiment 0.912753000887095 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162226642 chr2:162226654 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_39732 0 0 1 0 1 Cytosol 1 0.500234196010716 1 0.999531607978568 hm5C_site_39037 DeepMRMD:1;iRNA_m5C:0.999531607978568 39038 chr2 162226654 162226654 1 + G T UCEC 162226650 + 162226630 162226670 41 GAGGCAGTTGATCCAGTGTTCCAAGCTAAAATGTTGGATAT GAGGCAGTTGATCCAGTGTTCCAATCTAAAATGTTGGATAT < 41bp 1 0.190293813638519 1 0.391113460063934 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162226650 chr2:162226654 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_39733 0 0 1 0 1 Cytosol 1 0.500231643938183 1 0.999536712123634 hm5C_site_39038 DeepMRMD:1;iRNA_m5C:0.999536712123634 39039 chr17 7592183 7592183 1 + G T UCEC 7592180 + 7592160 7592200 41 AGGAGCTACGGGAGGGGGACCCAGTTTCTCTCTCCACTCCC AGGAGCTACGGGAGGGGGACCCATTTTCTCTCTCCACTCCC < 41bp 1 0.109800790847223 1 0.0947650671005249 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7592180 chr17:7592183 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_39734 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39039 DeepMRMD:1;iRNA_m5C:0.999536712157815 39040 chr20 42341729 42341729 1 + C T UCEC 42341738 + 42341718 42341758 41 TGTCCACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTG TGTCCACACTGTCCAAGTCTCTATCCTTGGTAAGGCTTCTG < 41bp 1 0.0744555295585049 1 0.0574725866317749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341738 chr20:42341729 nonsynonymous SNV 0.690 1 12 hm5C_associated_SNPs_39735 0 0 1 0 2 Cytosol 1 0.500231643920727 1 0.999536712158546 hm5C_site_39040 DeepMRMD:1;iRNA_m5C:0.999536712158546 39041 chr20 42341729 42341729 1 + C T UCEC 42341742 + 42341722 42341762 41 CACACTGCCCAAGTCTCTATCCTTGGTAAGGCTTCTGCTCC CACACTGTCCAAGTCTCTATCCTTGGTAAGGCTTCTGCTCC < 41bp 1 0.0869307021325502 1 0.101165413856506 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42341742 chr20:42341729 nonsynonymous SNV 0.690 1 8 hm5C_associated_SNPs_39736 0 0 1 0 2 Cytosol 1 0.500231643922127 1 0.999536712155745 hm5C_site_39041 DeepMRMD:1;iRNA_m5C:0.999536712155745 39042 chr1 10332318 10332318 1 + A C UCEC 10332306 + 10332286 10332326 41 GTATTTATTTTAGGAAGGAGCAAATATTAATAAGTCTCTTA GTATTTATTTTAGGAAGGAGCAAATATTAATACGTCTCTTA < 41bp 1 0.0426958591029395 1 0.157997131347656 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10332306 chr1:10332318 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_39737 0 0 1 1 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39042 DeepMRMD:1;iRNA_m5C:0.999536712157815 39043 chr22 31489557 31489557 1 + G A UCEC 31489570 + 31489550 31489590 41 GGCAGCCGAGGTAGCTGTAGCCACCGTGGAGCCGGTGGCCC GGCAGCCAAGGTAGCTGTAGCCACCGTGGAGCCGGTGGCCC < 41bp 1 0.159578036915501 1 0.482177495956421 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control SMTN ENSG00000183963 CDS Human protein_coding chr22:31489570 chr22:31489557 nonsynonymous SNV 0.809 2 8 hm5C_associated_SNPs_39738 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39043 DeepMRMD:1;iRNA_m5C:0.999536712157815 39044 chr7 139107003 139107003 1 + G T UCEC 139107012 + 139106992 139107032 41 GAGATCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAAT GAGATCGGAAATATAAGAAGCGGTCCTATGAGAGTGCTAAT < 41bp 1 0.146585613455569 1 0.413166046142578 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107012 chr7:139107003 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_39739 0 0 1 0 1 unknown 1 0.50023165540745 1 0.999536689185099 hm5C_site_39044 DeepMRMD:1;iRNA_m5C:0.999536689185099 39045 chr7 139107003 139107003 1 + G T UCEC 139107016 + 139106996 139107036 41 TCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCA TCGGAAATATAAGAAGCGGTCCTATGAGAGTGCTAATGGCA < 41bp 1 0.0772241626459681 1 0.0810203552246094 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107016 chr7:139107003 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_39740 0 0 1 0 1 unknown 1 0.500231646949179 1 0.999536706101642 hm5C_site_39045 DeepMRMD:1;iRNA_m5C:0.999536706101642 39046 chr7 139107003 139107003 1 + G T UCEC 139107017 + 139106997 139107037 41 CGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAG CGGAAATATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAG < 41bp 1 0.154679586396767 1 0.0675919353961945 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107017 chr7:139107003 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_39741 0 0 1 0 1 unknown 1 0.500231643934539 1 0.999536712130922 hm5C_site_39046 DeepMRMD:1;iRNA_m5C:0.999536712130922 39047 chr1 104115880 104115880 1 + C T UCEC 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATCGAGAACTACAATGATGCTACTTAGGTAAATTTTTTTA < 41bp 1 0.304902263224687 1 0.197272598743439 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115880 stopgain 0.370 1 26 hm5C_associated_SNPs_39742 0 0 0 0 1 exosome 1 0.500231643929176 1 0.999536712141648 hm5C_site_39047 DeepMRMD:1;iRNA_m5C:0.999536712141648 39048 chr17 18220885 18220885 1 + G A UCEC 18220876 + 18220856 18220896 41 TGCTGTATTGGGAAGGAGAGCGATGGTCAGTTGGTGCTGCC TGCTGTATTGGGAAGGAGAGCGATGGTCAATTGGTGCTGCC < 41bp 1 0.337386902494367 1 0.655269920825958 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMCR8 ENSG00000176994 CDS Human protein_coding chr17:18220876 chr17:18220885 synonymous SNV . 0 30 hm5C_associated_SNPs_39743 0 0 1 0 0 chromatin 1 0.500231643921352 0.689460158348084 0.999536712157296 hm5C_site_39048 DeepMRMD:0.689460158348084;iRNA_m5C:0.999536712157296 39049 chr3 196537515 196537515 1 + T G UCEC 196537520 + 196537500 196537540 41 CAAGATATGAAAAAATTGGACAAGGGTAAGTATTTGTGACT CAAGATATGAAAAAAGTGGACAAGGGTAAGTATTTGTGACT < 41bp 1 0.47523814706245 1 0.67487758398056 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196537520 chr3:196537515 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_39744 0 0 1 0 1 Ribosome 1 0.5002317187769 0.65024483203888 0.999536562446201 hm5C_site_39049 DeepMRMD:0.65024483203888;iRNA_m5C:0.999536562446201 39050 chr16 4382302 4382302 1 + G A UCEC 4382296 + 4382276 4382316 41 CTCACCATGCACTCCCTGGACGAGCCGCTCGACCTGAAGCT CTCACCATGCACTCCCTGGACGAGCCACTCGACCTGAAGCT < 41bp 1 0.326029632779327 1 0.304642558097839 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4382296 chr16:4382302 synonymous SNV . 0 27 hm5C_associated_SNPs_39745 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920922 1 0.999536712158157 hm5C_site_39050 DeepMRMD:1;iRNA_m5C:0.999536712158157 39051 chr16 4382302 4382302 1 + G A UCEC 4382300 + 4382280 4382320 41 CCATGCACTCCCTGGACGAGCCGCTCGACCTGAAGCTGAGT CCATGCACTCCCTGGACGAGCCACTCGACCTGAAGCTGAGT < 41bp 1 0.0386540366666328 1 0.0166564285755157 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4382300 chr16:4382302 synonymous SNV . 0 23 hm5C_associated_SNPs_39746 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921307 1 0.999536712157386 hm5C_site_39051 DeepMRMD:1;iRNA_m5C:0.999536712157386 39052 chr10 43292231 43292231 1 + G T UCEC 43292225 + 43292205 43292245 41 GACGATGACCTTGAGAGGAGCTCAGCGGAAGAAGGGGAAGC GACGATGACCTTGAGAGGAGCTCAGCTGAAGAAGGGGAAGC < 41bp 1 0.395239391954651 1 0.140420734882355 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292225 chr10:43292231 synonymous SNV . 0 27 hm5C_associated_SNPs_39747 0 0 1 0 0 chromatin 1 0.500231644166773 1 0.999536711666454 hm5C_site_39052 DeepMRMD:1;iRNA_m5C:0.999536711666454 39053 chr2 54856378 54856378 1 + G T UCEC 54856361 + 54856341 54856381 41 CAGTGGCCACTTTGAGCAGGCCATCAAGGAAGGCGAAGACA CAGTGGCCACTTTGAGCAGGCCATCAAGGAAGGCGAATACA < 41bp 1 0.0143084727523655 1 0.0339231789112091 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54856361 chr2:54856378 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_39749 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39053 DeepMRMD:1;iRNA_m5C:0.999536712157815 39054 chr2 54856378 54856378 1 + G T UCEC 54856362 + 54856342 54856382 41 AGTGGCCACTTTGAGCAGGCCATCAAGGAAGGCGAAGACAT AGTGGCCACTTTGAGCAGGCCATCAAGGAAGGCGAATACAT < 41bp 1 0.247856473230585 1 0.0410598516464233 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54856362 chr2:54856378 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_39750 0 0 1 0 0 Nucleus 1 0.500231638650817 1 0.999536722698366 hm5C_site_39054 DeepMRMD:1;iRNA_m5C:0.999536722698366 39055 chr2 54856378 54856378 1 + G T UCEC 54856365 + 54856345 54856385 41 GGCCACTTTGAGCAGGCCATCAAGGAAGGCGAAGACATGAT GGCCACTTTGAGCAGGCCATCAAGGAAGGCGAATACATGAT < 41bp 1 0.592638889907467 1 0.764148950576782 experiment 0.814722220185065 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54856365 chr2:54856378 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_39751 0 0 1 0 0 Nucleus 1 0.500231643921092 0.471702098846436 0.999536712157815 hm5C_site_39055 DeepMRMD:0.471702098846436;iRNA_m5C:0.999536712157815 39056 chr2 236403465 236403465 1 + G T UCEC 236403477 + 236403457 236403497 41 CAGAACCAGATCCGGGAGCACGTCATCGCCATCGAAGGTGA CAGAACCATATCCGGGAGCACGTCATCGCCATCGAAGGTGA < 41bp 1 0.359147695547521 1 0.118291318416595 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236403477 chr2:236403465 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_39753 0 0 1 0 1 Nucleus 1 0.498143103342806 1 1 hm5C_site_39056 DeepMRMD:1;iRNA_m5C:1 39057 chr11 68213918 68213918 1 + G A UCEC 68213907 + 68213887 68213927 41 GGCTTGGCTCTCCTCAGATCCTGAACCCGCCGCCCTCCCCG GGCTTGGCTCTCCTCAGATCCTGAACCCGCCACCCTCCCCG < 41bp 1 0.647123660550101 1 0.810072064399719 experiment 0.705752678899799 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68213907 chr11:68213918 synonymous SNV . 0 32 hm5C_associated_SNPs_39754 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921076 0.379855871200562 0.999536712157848 hm5C_site_39057 DeepMRMD:0.379855871200562;iRNA_m5C:0.999536712157848 39058 chr17 4924127 4924127 1 + G A UCEC 4924120 + 4924100 4924140 41 GGCTGCAGGATCTGGAGAATCAGTACCGGAAAGAAAAGGAA GGCTGCAGGATCTGGAGAATCAGTACCAGAAAGAAAAGGAA < 41bp 1 0.506666785264037 1 0.803287506103516 experiment 0.986666429471927 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KIF1C ENSG00000129250 CDS Human protein_coding chr17:4924120 chr17:4924127 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_39755 0 0 1 0 2 Ribosome 1 0.500231643950435 0.393424987792968 0.99953671209913 hm5C_site_39058 DeepMRMD:0.393424987792968;iRNA_m5C:0.99953671209913 39059 chr17 4924127 4924127 1 + G A UCEC 4924125 + 4924105 4924145 41 CAGGATCTGGAGAATCAGTACCGGAAAGAAAAGGAAGAAGC CAGGATCTGGAGAATCAGTACCAGAAAGAAAAGGAAGAAGC < 41bp 1 0.325260394877489 1 0.149307399988174 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KIF1C ENSG00000129250 CDS Human protein_coding chr17:4924125 chr17:4924127 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_39756 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39059 DeepMRMD:1;iRNA_m5C:0.999536712157815 39060 chr17 4924127 4924127 1 + G A UCEC 4924126 + 4924106 4924146 41 AGGATCTGGAGAATCAGTACCGGAAAGAAAAGGAAGAAGCC AGGATCTGGAGAATCAGTACCAGAAAGAAAAGGAAGAAGCC < 41bp 1 0.45023003556877 1 0.624582886695862 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KIF1C ENSG00000129250 CDS Human protein_coding chr17:4924126 chr17:4924127 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_39757 0 0 1 0 2 Ribosome 1 0.500231643921197 0.750834226608276 0.999536712157606 hm5C_site_39060 DeepMRMD:0.750834226608276;iRNA_m5C:0.999536712157606 39061 chr12 551027 551027 1 + G T UCEC 551010 + 550990 551030 41 CCGTGACAGCAATAGACGGGCACATAAGATACAAGGAGAAC CCGTGACAGCAATAGACGGGCACATAAGATACAAGGATAAC < 41bp 1 0.218479400881138 1 0.0647686123847961 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC77 ENSG00000120647 CDS Human protein_coding chr12:551010 chr12:551027 stopgain 1.000 1 38 hm5C_associated_SNPs_39758 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39061 DeepMRMD:1;iRNA_m5C:0.999536712157815 39062 chr1 206821317 206821317 1 + G A UCEC 206821305 + 206821285 206821325 41 CGTCAAGCAGCTGAGGAGATCCGGATTTTGGAGCATCTTAA CGTCAAGCAGCTGAGGAGATCCGGATTTTGGAACATCTTAA < 41bp 1 0.58785415133788 1 0.557754695415497 experiment 0.824291697324241 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYRK3 ENSG00000143479 CDS Human protein_coding chr1:206821305 chr1:206821317 synonymous SNV . 0 33 hm5C_associated_SNPs_39759 0 0 1 0 0 Cytosol 1 0.500231643916441 0.884490609169006 0.999536712167117 hm5C_site_39062 DeepMRMD:0.884490609169006;iRNA_m5C:0.999536712167117 39063 chr19 46026024 46026024 1 + C T UCEC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTTGA < 41bp 1 0.563832972339102 1 0.341933906078339 experiment 0.872334055321795 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026024 stopgain 0.003 0 39 hm5C_associated_SNPs_39760 0 0 1 0 3 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_39063 DeepMRMD:1;iRNA_m5C:0.999536712157814 39064 chr19 46026024 46026024 1 + C T UCEC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTTGAA < 41bp 1 0.340489598623197 1 0.261053144931793 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026024 stopgain 0.003 0 38 hm5C_associated_SNPs_39761 0 0 1 0 3 Ribosome 1 0.500231644896511 1 0.999536710206978 hm5C_site_39064 DeepMRMD:1;iRNA_m5C:0.999536710206978 39065 chr19 46026024 46026024 1 + C T UCEC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTTGAAG < 41bp 1 0.475212841352809 1 0.513307988643646 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026024 stopgain 0.003 0 37 hm5C_associated_SNPs_39762 0 0 1 0 3 Ribosome 1 0.500231643922083 0.973384022712708 0.999536712155835 hm5C_site_39065 DeepMRMD:0.973384022712708;iRNA_m5C:0.999536712155835 39066 chr3 157841657 157841657 1 + G A UCEC 157841658 + 157841638 157841678 41 ATTATATTTTATTTCAGACGCAGGCATCGATCAAGCAGTAG ATTATATTTTATTTCAGACACAGGCATCGATCAAGCAGTAG < 41bp 1 0.369543883903858 1 0.0922740399837494 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841658 chr3:157841657 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_39763 0 0 0 0 1 Ribosome 1 0.500232206377144 1 0.999535587245712 hm5C_site_39066 DeepMRMD:1;iRNA_m5C:0.999535587245712 39067 chr3 157841657 157841657 1 + G A UCEC 157841665 + 157841645 157841685 41 TTTATTTCAGACGCAGGCATCGATCAAGCAGTAGCTCTTCT TTTATTTCAGACACAGGCATCGATCAAGCAGTAGCTCTTCT < 41bp 1 0.079033237952865 1 0.127911627292633 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841665 chr3:157841657 nonsynonymous SNV 0.999 1 13 hm5C_associated_SNPs_39764 0 0 0 0 1 Ribosome 1 0.500231643838138 1 0.999536712323724 hm5C_site_39067 DeepMRMD:1;iRNA_m5C:0.999536712323724 39068 chr10 103826761 103826761 1 + C A UCEC 103826778 + 103826758 103826798 41 TTTCCAAGCCCTTCCTACAGCAGCCTGGGGTGCCACCCTCA TTTACAAGCCCTTCCTACAGCAGCCTGGGGTGCCACCCTCA < 41bp 1 0.420591858880857 1 0.0885947048664093 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HPS6 ENSG00000166189 CDS Human protein_coding chr10:103826778 chr10:103826761 nonsynonymous SNV 0.378 3 4 hm5C_associated_SNPs_39765 0 0 1 0 0 Ribosome 1 0.500231643921024 1 0.999536712157951 hm5C_site_39068 DeepMRMD:1;iRNA_m5C:0.999536712157951 39069 chr19 49644745 49644745 1 + G A UCEC 49644738 + 49644718 49644758 41 GGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAG GGGCTAGCCAAGCTGACAGGCCCAGGAAACAAGGACCGAAG < 41bp 1 0.180828734882997 1 0.331139892339706 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644738 chr19:49644745 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_39766 0 0 0 0 2 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_39069 DeepMRMD:1;iRNA_m5C:0.999536712157813 39070 chr3 20019810 20019810 1 + G A UCEC 20019825 + 20019805 20019845 41 GCACAGTCCTATGCAGATGACAATAGTTTATTATTCATGGA GCACAATCCTATGCAGATGACAATAGTTTATTATTCATGGA < 41bp 1 0.478686658219423 1 0.138228982686996 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019825 chr3:20019810 synonymous SNV . 0 6 hm5C_associated_SNPs_39767 0 0 1 2 2 Ribosome 1 0.500231628930327 1 0.999536742139346 hm5C_site_39070 DeepMRMD:1;iRNA_m5C:0.999536742139346 39071 chr10 17277845 17277845 1 + G A UCEC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGAATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG < 41bp 1 0.0619648514550018 1 0.507292807102203 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277845 synonymous SNV . 0 8 hm5C_associated_SNPs_39768 0 0 1 1 2 Ribosome 1 0.500231643921093 0.985414385795594 0.999536712157815 hm5C_site_39071 DeepMRMD:0.985414385795594;iRNA_m5C:0.999536712157815 39072 chr10 88719418 88719418 1 + G T UCEC 88719427 + 88719407 88719447 41 AATGTTGTACAGAGCGTGACCTCAGGTGAGAAGCCCCAGGG AATGTTGTACATAGCGTGACCTCAGGTGAGAAGCCCCAGGG < 41bp 1 0.661473082962752 1 0.674708604812622 experiment 0.677053834074496 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNCG ENSG00000173267 CDS Human protein_coding chr10:88719427 chr10:88719418 nonsynonymous SNV 0.507 1 12 hm5C_associated_SNPs_39769 0 0 1 0 2 Cytosol 1 0.500229527675817 0.650582790374756 0.999540944648366 hm5C_site_39072 DeepMRMD:0.650582790374756;iRNA_m5C:0.999540944648366 39073 chr19 49377944 49377944 1 + G A UCEC 49377943 + 49377923 49377963 41 ACTTCAGGGGCTGGGGATATCGACCTGGAAAAGAGACAGAG ACTTCAGGGGCTGGGGATATCAACCTGGAAAAGAGACAGAG < 41bp 1 0.620343090868558 1 0.671644330024719 experiment 0.759313818262883 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377943 chr19:49377944 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_39770 0 0 1 0 0 Cytosol 1 0.500231643921093 0.656711339950562 0.999536712157813 hm5C_site_39073 DeepMRMD:0.656711339950562;iRNA_m5C:0.999536712157813 39074 chr8 61775119 61775119 1 + A G UCEC 61775123 + 61775103 61775143 41 CCAGATGGGTGGAGCTATGGCGCCTCCAATGAAGGATCTAC CCAGATGGGTGGAGCTGTGGCGCCTCCAATGAAGGATCTAC < 41bp 1 0.121809671865921 1 0.180670380592346 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHD7 ENSG00000171316 CDS Human protein_coding chr8:61775123 chr8:61775119 nonsynonymous SNV 0.996 2 17 hm5C_associated_SNPs_39771 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39074 DeepMRMD:1;iRNA_m5C:0.999536712157815 39075 chrX 70787353 70787353 1 + C A UCEC 70787359 + 70787339 70787379 41 CCCTATTTTAGATTCTGAAGCGTGTTCCCAATAGTGTACTC CCCTATTTTAGATTATGAAGCGTGTTCCCAATAGTGTACTC < 41bp 1 0.222911182256681 1 0.0636637508869171 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70787359 chrX:70787353 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_39772 0 0 1 0 1 Nucleus 1 0.500231643921667 1 0.999536712156667 hm5C_site_39075 DeepMRMD:1;iRNA_m5C:0.999536712156667 39076 chr1 54670719 54670719 1 + G T UCEC 54670699 + 54670679 54670719 41 ATTACCTCAAAGGTGTAAAGCAGGCCCTCTGGCTCACCAAG ATTACCTCAAAGGTGTAAAGCAGGCCCTCTGGCTCACCAAT < 41bp 1 0.331189077565729 1 0.769272863864899 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54670699 chr1:54670719 nonsynonymous SNV 0.987 4 41 hm5C_associated_SNPs_39773 0 0 1 0 1 Ribosome 1 0.500231641984947 0.461454272270202 0.999536716030107 hm5C_site_39076 DeepMRMD:0.461454272270202;iRNA_m5C:0.999536716030107 39077 chr11 61491043 61491043 1 + C T UCEC 61491024 + 61491004 61491044 41 ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCG ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGTG < 41bp 1 0.1062756031457 1 0.105314940214157 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491024 chr11:61491043 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_39774 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643903349 1 0.999536712193303 hm5C_site_39077 DeepMRMD:1;iRNA_m5C:0.999536712193303 39078 chr20 39721177 39721177 1 + T G UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATGTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT < 41bp 1 0.0689234539420216 1 0.0365831851959229 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721177 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_39775 0 0 1 5 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_39078 DeepMRMD:1;iRNA_m5C:0.999536712157814 39079 chr16 67197019 67197019 1 + G A UCEC 67197039 + 67197019 67197059 41 GACCTGCGGCGCTTGTCCTTCACACTGGACGACGCGCTGGT AACCTGCGGCGCTTGTCCTTCACACTGGACGACGCGCTGGT < 41bp 1 0.415979539240173 1 0.203445255756378 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXL8 ENSG00000135722 CDS Human protein_coding chr16:67197039 chr16:67197019 nonsynonymous SNV 0.956 0 1 hm5C_associated_SNPs_39776 0 0 0 0 0 exosome 1 0.500230615029759 1 0.999538769940481 hm5C_site_39079 DeepMRMD:1;iRNA_m5C:0.999538769940481 39080 chr1 171501770 171501770 1 + C T UCEC 171501758 + 171501738 171501778 41 AGGAAATTAGGGAAAGGGAGCGAGAAAAAGAACGGGAGCGT AGGAAATTAGGGAAAGGGAGCGAGAAAAAGAATGGGAGCGT < 41bp 1 0.611162889790104 1 0.748581349849701 experiment 0.777674220419793 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171501758 chr1:171501770 nonsynonymous SNV 0.937 2 33 hm5C_associated_SNPs_39777 0 0 1 0 0 Cytosol 1 0.500231621640362 0.502837300300598 0.999536756719275 hm5C_site_39080 DeepMRMD:0.502837300300598;iRNA_m5C:0.999536756719275 39081 chr1 44069428 44069428 1 + G T UCEC 44069418 + 44069398 44069438 41 CGGGCCGACGAGGCGCGGCCCAACACCATAGATTTCGGCAA CGGGCCGACGAGGCGCGGCCCAACACCATATATTTCGGCAA < 41bp 1 0.368174682355423 1 0.134082943201065 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44069418 chr1:44069428 nonsynonymous SNV 0.993 3 31 hm5C_associated_SNPs_39778 0 0 1 0 0 Ribosome 1 0.500231643921287 1 0.999536712157427 hm5C_site_39081 DeepMRMD:1;iRNA_m5C:0.999536712157427 39082 chr17 37359351 37359351 1 + C T UCEC 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATTGA < 41bp 1 0.19790657199605 1 0.0841534435749054 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359351 synonymous SNV . 0 39 hm5C_associated_SNPs_39779 0 0 1 0 1 chromatin 1 0.500231636543484 1 0.999536726913032 hm5C_site_39082 DeepMRMD:1;iRNA_m5C:0.999536726913032 39083 chr16 48395715 48395715 1 + C T UCEC 48395730 - 48395710 48395750 41 AAAAATACGATGGTCACCAGCAGTTCTTCGCAATCGTACAG AAAAATACGATGGTCACCAGCAGTTCTTCGCAATCATACAG < 41bp 1 0.216055300640972 1 0.371900588274002 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIAH1 ENSG00000102910;ENSG00000196470 CDS Human other chr16:48395730 chr16:48395715 nonsynonymous SNV 0.997 3 36 hm5C_associated_SNPs_39781 0 0 1 0 0 chromatin 1 0.500231643921083 1 0.999536712157833 hm5C_site_39083 DeepMRMD:1;iRNA_m5C:0.999536712157833 39084 chr6 31593317 31593317 1 + G A UCEC 31593332 + 31593312 31593352 41 GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC GTCATAATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC < 41bp 1 0.659592515275471 1 0.484743595123291 experiment 0.680814969449058 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593332 chr6:31593317 nonsynonymous SNV 0.999 0 6 hm5C_associated_SNPs_39783 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39084 DeepMRMD:1;iRNA_m5C:0.999536712157815 39085 chr1 63282274 63282274 1 + G A UCEC 63282293 + 63282273 63282313 41 CGGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA CAGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA < 41bp 1 0.412618589890151 1 0.126147538423538 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4C ENSG00000125703 CDS Human protein_coding chr1:63282293 chr1:63282274 synonymous SNV . 0 2 hm5C_associated_SNPs_39784 0 0 1 0 1 Ribosome 1 0.500231643921136 1 0.999536712157727 hm5C_site_39085 DeepMRMD:1;iRNA_m5C:0.999536712157727 39086 chr16 81077076 81077076 1 + G A UCEC 81077079 + 81077059 81077099 41 CTACAGCCGACTCCTCAGCCCAGCCTGTGGTGTTAGGTGTT CTACAGCCGACTCCTCAACCCAGCCTGTGGTGTTAGGTGTT < 41bp 1 0.43179676576873 1 0.274083584547043 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81077079 chr16:81077076 nonsynonymous SNV 0.982 0 18 hm5C_associated_SNPs_39785 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39086 DeepMRMD:1;iRNA_m5C:0.999536712157815 39087 chr16 84695577 84695577 1 + G T UCEC 84695562 + 84695542 84695582 41 GGCGGCTACAGCTGGGAGAACACTGCCTTCTCCAAGACCGT GGCGGCTACAGCTGGGAGAACACTGCCTTCTCCAATACCGT < 41bp 1 0.188346936631844 1 0.120462447404861 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84695562 chr16:84695577 nonsynonymous SNV 0.996 1 36 hm5C_associated_SNPs_39786 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39087 DeepMRMD:1;iRNA_m5C:0.999536712157815 39088 chr13 115037798 115037798 1 + G A UCEC 115037793 + 115037773 115037813 41 AGACTGCAGAAGAAACGGGGCTTACGCCATTGGAAACCTCA AGACTGCAGAAGAAACGGGGCTTACACCATTGGAAACCTCA < 41bp 1 0.0613173202759607 1 0.0707065761089325 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC16 ENSG00000130177 CDS Human protein_coding chr13:115037793 chr13:115037798 synonymous SNV . 0 26 hm5C_associated_SNPs_39787 0 0 1 0 0 Ribosome 1 0.500231635731109 1 0.999536728537782 hm5C_site_39088 DeepMRMD:1;iRNA_m5C:0.999536728537782 39089 chr9 132863427 132863427 1 + C T UCEC 132863429 + 132863409 132863449 41 CACCATTGCACTCATTGGCACTGGCTGGGCTTTCATTAAGC CACCATTGCACTCATTGGTACTGGCTGGGCTTTCATTAAGC < 41bp 1 0.186786393158329 1 0.635406970977783 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GPR107 ENSG00000148358 CDS Human protein_coding chr9:132863429 chr9:132863427 synonymous SNV . 0 19 hm5C_associated_SNPs_39788 0 0 1 0 2 Ribosome 1 0.500231644879623 0.729186058044434 0.999536710240754 hm5C_site_39089 DeepMRMD:0.729186058044434;iRNA_m5C:0.999536710240754 39090 chr8 61654501 61654501 1 + G A UCEC 61654520 + 61654500 61654540 41 CGCAGCCGGCTCCGTCGGGGCCCCCTGCACAGGGCCACCCT CACAGCCGGCTCCGTCGGGGCCCCCTGCACAGGGCCACCCT < 41bp 1 0.0929909823249802 1 0.127022355794907 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61654520 chr8:61654501 synonymous SNV . 0 2 hm5C_associated_SNPs_39789 0 0 0 0 0 Cytosol 1 0.500231644039907 1 0.999536711920186 hm5C_site_39090 DeepMRMD:1;iRNA_m5C:0.999536711920186 39091 chr8 61654501 61654501 1 + G A UCEC 61654521 + 61654501 61654541 41 GCAGCCGGCTCCGTCGGGGCCCCCTGCACAGGGCCACCCTC ACAGCCGGCTCCGTCGGGGCCCCCTGCACAGGGCCACCCTC < 41bp 1 0.14993198468059 1 0.127823710441589 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61654521 chr8:61654501 synonymous SNV . 0 1 hm5C_associated_SNPs_39790 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39091 DeepMRMD:1;iRNA_m5C:0.999536712157815 39092 chr19 36431020 36431020 1 + C T UCEC 36431037 + 36431017 36431057 41 GCTCGCCAGGCCCCGGGGCTCGCCCGCCTCTGCCCTGGTGC GCTTGCCAGGCCCCGGGGCTCGCCCGCCTCTGCCCTGGTGC < 41bp 1 0.636474482764322 1 0.152570456266403 experiment 0.727051034471357 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRFN3 ENSG00000126243 CDS Human protein_coding chr19:36431037 chr19:36431020 synonymous SNV . 0 4 hm5C_associated_SNPs_39791 0 0 0 0 0 nucleus 1 0.500231643920541 1 0.999536712158917 hm5C_site_39092 DeepMRMD:1;iRNA_m5C:0.999536712158917 39093 chr10 89474567 89474567 1 + T G UCEC 89474562 + 89474542 89474582 41 TCCTGAGCGTGTGCTTAAAACCAATTTGTCCACAGTGAGTG TCCTGAGCGTGTGCTTAAAACCAATGTGTCCACAGTGAGTG < 41bp 1 0.284238151184488 1 0.0579856336116791 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474562 chr10:89474567 nonsynonymous SNV 0.988 0 26 hm5C_associated_SNPs_39792 0 0 1 0 2 Cytosol 1 0.5002284769424 1 0.999543046115199 hm5C_site_39093 DeepMRMD:1;iRNA_m5C:0.999543046115199 39094 chr8 64099567 64099567 1 + G A UCEC 64099584 + 64099564 64099604 41 AAGGACCTCAGCCACAGGCCCAGCCTCACCAAGTGCAGCCT AAGAACCTCAGCCACAGGCCCAGCCTCACCAAGTGCAGCCT < 41bp 1 0.315426213574034 1 0.108263373374939 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control YTHDF3 ENSG00000185728 CDS Human protein_coding chr8:64099584 chr8:64099567 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_39793 0 0 1 0 0 chromatin 1 0.500231644343642 1 0.999536711312716 hm5C_site_39094 DeepMRMD:1;iRNA_m5C:0.999536711312716 39095 chr12 100732687 100732687 1 + C A UCEC 100732676 + 100732656 100732696 41 AAGACCCACAGATATGTCTGCCCTTAATAATCTCTTTGGCC AAGACCCACAGATATGTCTGCCCTTAATAATATCTTTGGCC < 41bp 1 0.0576240699317525 1 0.0635038316249847 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732676 chr12:100732687 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_39794 0 0 0 0 0 chromatin 1 0.500231644001007 1 0.999536711997986 hm5C_site_39095 DeepMRMD:1;iRNA_m5C:0.999536711997986 39096 chr12 100732687 100732687 1 + C A UCEC 100732689 + 100732669 100732709 41 ATGTCTGCCCTTAATAATCTCTTTGGCCCTCAGAAACCCAA ATGTCTGCCCTTAATAATATCTTTGGCCCTCAGAAACCCAA < 41bp 1 0.187701589343373 1 0.0488402247428894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732689 chr12:100732687 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_39795 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39096 DeepMRMD:1;iRNA_m5C:0.999536712157815 Estimated glomerular filtration rate 39097 chr12 100732687 100732687 1 + C A UCEC 100732695 + 100732675 100732715 41 GCCCTTAATAATCTCTTTGGCCCTCAGAAACCCAAAGTTAG GCCCTTAATAATATCTTTGGCCCTCAGAAACCCAAAGTTAG < 41bp 1 0.0627922494382568 1 0.0392602384090424 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732695 chr12:100732687 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_39796 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39097 DeepMRMD:1;iRNA_m5C:0.999536712157815 39098 chr12 100732687 100732687 1 + C A UCEC 100732697 + 100732677 100732717 41 CCTTAATAATCTCTTTGGCCCTCAGAAACCCAAAGTTAGCA CCTTAATAATATCTTTGGCCCTCAGAAACCCAAAGTTAGCA < 41bp 1 0.30433847640305 1 0.0497715473175049 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732697 chr12:100732687 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_39797 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39098 DeepMRMD:1;iRNA_m5C:0.999536712157815 39099 chr12 100732687 100732687 1 + C A UCEC 100732699 + 100732679 100732719 41 TTAATAATCTCTTTGGCCCTCAGAAACCCAAAGTTAGCATG TTAATAATATCTTTGGCCCTCAGAAACCCAAAGTTAGCATG < 41bp 1 0.651562821241788 1 0.647677779197693 experiment 0.696874357516425 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732699 chr12:100732687 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_39798 0 0 0 0 0 chromatin 1 0.500231643921083 0.704644441604614 0.999536712157835 hm5C_site_39099 DeepMRMD:0.704644441604614;iRNA_m5C:0.999536712157835 39100 chr11 58347080 58347080 1 + A G UCEC 58347094 + 58347074 58347114 41 GCAAGAAGAGTCCGCGACTCCTGTGAGTAACAGTCTTTCAG GCAAGAGGAGTCCGCGACTCCTGTGAGTAACAGTCTTTCAG < 41bp 1 0.692614283402631 1 0.173291057348251 experiment 0.614771433194739 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58347094 chr11:58347080 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_39799 0 0 1 0 1 chromatin 1 0.500231643998695 1 0.99953671200261 hm5C_site_39100 DeepMRMD:1;iRNA_m5C:0.99953671200261 39101 chr1 112305367 112305367 1 + G A UCEC 112305377 + 112305357 112305397 41 TGGATTGGGAGACATACATGCATCGGATTGGGAGAGCTGGC TGGATTGGGAAACATACATGCATCGGATTGGGAGAGCTGGC < 41bp 1 0.405635061596728 1 0.146975219249725 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX20 ENSG00000064703 CDS Human protein_coding chr1:112305377 chr1:112305367 synonymous SNV . 0 11 hm5C_associated_SNPs_39800 0 0 1 0 2 Ribosome 1 0.50023153185776 1 0.999536936284481 hm5C_site_39101 DeepMRMD:1;iRNA_m5C:0.999536936284481 39102 chr14 20943231 20943231 1 + C T UCEC 20943217 + 20943197 20943237 41 GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTCC GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATTGTTTCC < 41bp 1 0.49740159698832 1 0.297461032867432 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 CDS Human protein_coding chr14:20943217 chr14:20943231 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_39801 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39102 DeepMRMD:1;iRNA_m5C:0.999536712157815 39103 chr17 79425683 79425683 1 + C T UCEC 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACATGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA < 41bp 1 0.0257654273699278 1 0.0561671555042267 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425683 nonsynonymous SNV 0.470 3 8 hm5C_associated_SNPs_39802 0 0 0 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_39103 DeepMRMD:1;iRNA_m5C:0.999536712157815 39104 chr21 44324156 44324156 1 + C T UCEC 44324165 + 44324145 44324185 41 CCAGCGCAAGGCGGCCCCTCCCCTGCCCAGAAAGGAAACCT CCAGCGCAAGGTGGCCCCTCCCCTGCCCAGAAAGGAAACCT < 41bp 1 0.0947350901636592 1 0.368163466453552 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFV3 ENSG00000160194 CDS Human protein_coding chr21:44324165 chr21:44324156 nonsynonymous SNV 0.000 0 12 hm5C_associated_SNPs_39803 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39104 DeepMRMD:1;iRNA_m5C:0.999536712157815 39105 chr3 123348371 123348371 1 + G T UCEC 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATCGTCGGATATCTCATCGAATGCCTCGTCGTCGAAGT < 41bp 1 0.492072832839362 1 0.293107241392136 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348371 synonymous SNV . 0 13 hm5C_associated_SNPs_39804 0 0 1 0 1 Cytosol 1 0.500231667505775 1 0.999536664988451 hm5C_site_39105 DeepMRMD:1;iRNA_m5C:0.999536664988451 39106 chr9 124535349 124535349 1 + G A UCEC 124535369 + 124535349 124535389 41 GACTCAGGCTCTGAGGGCCACAGCTCCCTGAGCTCACACAG AACTCAGGCTCTGAGGGCCACAGCTCCCTGAGCTCACACAG < 41bp 1 0.26867796312257 1 0.161762088537216 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124535369 chr9:124535349 nonsynonymous SNV 0.986 4 1 hm5C_associated_SNPs_39805 0 0 0 0 0 Ribosome 1 0.500231643930018 1 0.999536712139965 hm5C_site_39106 DeepMRMD:1;iRNA_m5C:0.999536712139965 39107 chr5 9548965 9548965 1 + C A UCEC 9548971 + 9548951 9548991 41 GAAAATGATGAATTCTGGGGCGCTGATTCATGTGACTTGAA GAAAATGATGAATTATGGGGCGCTGATTCATGTGACTTGAA < 41bp 1 0.174862483766693 1 0.0701399743556976 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000239112 ncRNA_exonic Human snoRNA chr5:9548971 chr5:9548965 . . 0 15 hm5C_associated_SNPs_39806 0 0 0 0 0 unknown 1 0.500231643882617 1 0.999536712234765 hm5C_site_39107 DeepMRMD:1;iRNA_m5C:0.999536712234765 39108 chr5 9548965 9548965 1 + C A UCEC 9548973 + 9548953 9548993 41 AAATGATGAATTCTGGGGCGCTGATTCATGTGACTTGAAAA AAATGATGAATTATGGGGCGCTGATTCATGTGACTTGAAAA < 41bp 1 0.138032636001139 1 0.0464910864830017 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000239112 ncRNA_exonic Human snoRNA chr5:9548973 chr5:9548965 . . 0 13 hm5C_associated_SNPs_39807 0 0 0 0 0 unknown 1 0.500231644354311 1 0.999536711291379 hm5C_site_39108 DeepMRMD:1;iRNA_m5C:0.999536711291379 39109 chr5 9548965 9548965 1 + C A UCEC 9548979 + 9548959 9548999 41 TGAATTCTGGGGCGCTGATTCATGTGACTTGAAAAATGCCA TGAATTATGGGGCGCTGATTCATGTGACTTGAAAAATGCCA < 41bp 1 0.351949622223006 1 0.231821358203888 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD123 ENSG00000239112 ncRNA_exonic Human snoRNA chr5:9548979 chr5:9548965 . . 0 7 hm5C_associated_SNPs_39808 0 0 0 0 0 unknown 1 0.500231643920815 1 0.99953671215837 hm5C_site_39109 DeepMRMD:1;iRNA_m5C:0.99953671215837 39110 chrX 48369835 48369835 1 + G A UCEC 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCATCTTCC < 41bp 1 0.0775056802184394 1 0.105169266462326 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369835 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_39809 0 0 1 0 2 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39110 DeepMRMD:1;iRNA_m5C:0.999536712157815 39111 chr1 151063032 151063032 1 + G A UCEC 151063038 + 151063018 151063058 41 GACATGCGCACATCGTGGAACTGCTTGTTCGGGTAAAGCAA GACATGCGCACATCATGGAACTGCTTGTTCGGGTAAAGCAA < 41bp 1 0.4464357249083 1 0.160681545734406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151063038 chr1:151063032 nonsynonymous SNV 0.987 4 15 hm5C_associated_SNPs_39811 0 0 0 0 1 chromatin 1 0.500231641429117 1 0.999536717141766 hm5C_site_39111 DeepMRMD:1;iRNA_m5C:0.999536717141766 39112 chr21 30715110 30715110 1 + G T UCEC 30715106 + 30715086 30715126 41 TGTCGTCAGAGTGGTGGGATCTCAGATTTCTGTCAGCAGAT TGTCGTCAGAGTGGTGGGATCTCATATTTCTGTCAGCAGAT < 41bp 1 0.433798719191295 1 0.498398393392563 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BACH1 ENSG00000156273 CDS Human protein_coding chr21:30715106 chr21:30715110 nonsynonymous SNV 0.977 5 25 hm5C_associated_SNPs_39812 0 0 1 0 0 Cytosol 1 0.500231705310064 1 0.999536589379872 hm5C_site_39112 DeepMRMD:1;iRNA_m5C:0.999536589379872 39113 chr21 30715110 30715110 1 + G T UCEC 30715122 + 30715102 30715142 41 GGATCTCAGATTTCTGTCAGCAGATGACTGATAAATGTACT GGATCTCATATTTCTGTCAGCAGATGACTGATAAATGTACT < 41bp 1 0.193365871047582 1 0.609152495861053 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BACH1 ENSG00000156273 CDS Human protein_coding chr21:30715122 chr21:30715110 nonsynonymous SNV 0.977 5 9 hm5C_associated_SNPs_39813 0 0 1 0 0 Cytosol 1 0.5002316439211 0.781695008277894 0.999536712157801 hm5C_site_39113 DeepMRMD:0.781695008277894;iRNA_m5C:0.999536712157801 39114 chr11 6631802 6631802 1 + A G UCEC 6631793 + 6631773 6631813 41 TGAAGACCCTGCAAAGCGACCCAAATTTGACATGATTGTGC TGAAGACCCTGCAAAGCGACCCAAATTTGGCATGATTGTGC < 41bp 1 0.196170466456544 1 0.0597631633281708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6631793 chr11:6631802 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_39814 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921126 1 0.999536712157747 hm5C_site_39114 DeepMRMD:1;iRNA_m5C:0.999536712157747 39115 chr1 204957871 204957871 1 + G A UCEC 204957878 + 204957858 204957898 41 CTTTACCCTCAGCGCCAGGACGCAGGTGGGCTCTGGGGAAG CTTTACCCTCAGCACCAGGACGCAGGTGGGCTCTGGGGAAG < 41bp 1 0.66387310041494 1 0.427699029445648 experiment 0.672253799170119 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NFASC ENSG00000163531 CDS Human protein_coding chr1:204957878 chr1:204957871 nonsynonymous SNV 0.995 3 14 hm5C_associated_SNPs_39816 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39115 DeepMRMD:1;iRNA_m5C:0.999536712157815 39116 chr15 64792186 64792186 1 + C A UCEC 64792174 + 64792154 64792194 41 CAGAAAAGGATCCTGGGGTCCTCCAGCCAGTTCCCTTGGGA CAGAAAAGGATCCTGGGGTCCTCCAGCCAGTTACCTTGGGA < 41bp 1 0.559769919281328 1 0.777809381484985 experiment 0.880460161437343 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ZNF609 ENSG00000180357 CDS Human protein_coding chr15:64792174 chr15:64792186 nonsynonymous SNV 0.995 0 33 hm5C_associated_SNPs_39817 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643919925 0.44438123703003 0.999536712160151 hm5C_site_39116 DeepMRMD:0.44438123703003;iRNA_m5C:0.999536712160151 39117 chr11 62653070 62653070 1 + T G UCEC 62653068 + 62653048 62653088 41 ATTGGCCTGGATGCAGCTGCCCTTCCTGGACAGGTACTGCT ATTGGCCTGGATGCAGCTGCCCGTCCTGGACAGGTACTGCT < 41bp 1 0.0978115902393773 1 0.0414822399616241 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62653068 chr11:62653070 nonsynonymous SNV 0.769 4 23 hm5C_associated_SNPs_39818 0 0 1 0 1 Nucleus 1 0.500231650995868 1 0.999536698008264 hm5C_site_39117 DeepMRMD:1;iRNA_m5C:0.999536698008264 39118 chr11 62653070 62653070 1 + T G UCEC 62653069 + 62653049 62653089 41 TTGGCCTGGATGCAGCTGCCCTTCCTGGACAGGTACTGCTT TTGGCCTGGATGCAGCTGCCCGTCCTGGACAGGTACTGCTT < 41bp 1 0.13980522469747 1 0.0992474853992462 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62653069 chr11:62653070 nonsynonymous SNV 0.769 4 22 hm5C_associated_SNPs_39819 0 0 1 0 1 Nucleus 1 0.500231199806562 1 0.999537600386876 hm5C_site_39118 DeepMRMD:1;iRNA_m5C:0.999537600386876 39119 chr1 26136283 26136283 1 + G A UCEC 26136269 + 26136249 26136289 41 CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCC CATCATCCTCTCCAAAGACGCCACCCACGTCCGCAACTTCC < 41bp 1 0.037809886725062 1 0.111380010843277 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136269 chr1:26136283 nonsynonymous SNV 0.664 1 35 hm5C_associated_SNPs_39820 0 0 1 0 1 unknown 1 0.500231643759598 1 0.999536712480805 hm5C_site_39119 DeepMRMD:1;iRNA_m5C:0.999536712480805 39120 chr1 26136283 26136283 1 + G A UCEC 26136270 + 26136250 26136290 41 ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCG ATCATCCTCTCCAAAGACGCCACCCACGTCCGCAACTTCCG < 41bp 1 0.104217155244986 1 0.0444973111152649 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136270 chr1:26136283 nonsynonymous SNV 0.664 1 34 hm5C_associated_SNPs_39821 0 0 1 0 1 unknown 1 0.500231636366607 1 0.999536727266787 hm5C_site_39120 DeepMRMD:1;iRNA_m5C:0.999536727266787 39121 chr1 26136283 26136283 1 + G A UCEC 26136273 + 26136253 26136293 41 ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCT ATCCTCTCCAAAGACGCCACCCACGTCCGCAACTTCCGGCT < 41bp 1 0.125841210127134 1 0.09086874127388 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136273 chr1:26136283 nonsynonymous SNV 0.664 1 31 hm5C_associated_SNPs_39822 0 0 1 0 1 unknown 1 0.500231643925186 1 0.999536712149628 hm5C_site_39121 DeepMRMD:1;iRNA_m5C:0.999536712149628 39122 chr1 26136283 26136283 1 + G A UCEC 26136274 + 26136254 26136294 41 TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTC TCCTCTCCAAAGACGCCACCCACGTCCGCAACTTCCGGCTC < 41bp 1 0.520455499999473 1 0.0421298742294312 experiment 0.959089000001054 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136274 chr1:26136283 nonsynonymous SNV 0.664 1 30 hm5C_associated_SNPs_39823 0 0 1 0 1 unknown 1 0.500231588409877 1 0.999536823180246 hm5C_site_39122 DeepMRMD:1;iRNA_m5C:0.999536823180246 39123 chrX 147022111 147022111 1 + T C UCEC 147022104 + 147022084 147022124 41 TTCTTTTTCAGGGTATGGTACCATTTGTTTTTGTGGGAACA TTCTTTTTCAGGGTATGGTACCATTTGCTTTTGTGGGAACA < 41bp 1 0.0491452567590744 1 0.0383423864841461 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FMR1 ENSG00000102081 CDS Human protein_coding chrX:147022104 chrX:147022111 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_39824 0 0 1 0 1 Cytosol 1 0.500231643921017 1 0.999536712157965 hm5C_site_39123 DeepMRMD:1;iRNA_m5C:0.999536712157965 39124 chrX 53112254 53112254 1 + C T UCEC 53112251 + 53112231 53112271 41 GGAGCAGCAGGAGGCGGCGGCGGCGGCGGAGGAGGAAGCAG GGAGCAGCAGGAGGCGGCGGCGGTGGCGGAGGAGGAAGCAG < 41bp 1 0.666488029047476 1 0.844605922698975 experiment 0.667023941905048 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53112251 chrX:53112254 nonsynonymous SNV 0.519 4 24 hm5C_associated_SNPs_39825 0 0 0 0 0 chromatin 1 0.500231643921098 0.31078815460205 0.999536712157804 hm5C_site_39124 DeepMRMD:0.31078815460205;iRNA_m5C:0.999536712157804 39125 chr14 105916469 105916469 1 + C T UCEC 105916480 + 105916460 105916500 41 CTGCGGCATCGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTC CTGCGGCATTGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTC < 41bp 1 0.161243268372615 1 0.0851139724254608 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105916480 chr14:105916469 nonsynonymous SNV 0.986 4 10 hm5C_associated_SNPs_39826 0 0 1 0 2 Cytosol 1 0.500231643921081 1 0.999536712157838 hm5C_site_39125 DeepMRMD:1;iRNA_m5C:0.999536712157838 39126 chr1 12316536 12316536 1 + G A UCEC 12316538 + 12316518 12316558 41 TTGTGATATTCAGCTGGAGACCATTCCCTTGAAACTCTCTC TTGTGATATTCAGCTGGAAACCATTCCCTTGAAACTCTCTC < 41bp 1 0.0212203642854807 1 0.0888688862323761 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS13D ENSG00000048707 CDS Human protein_coding chr1:12316538 chr1:12316536 synonymous SNV . 0 19 hm5C_associated_SNPs_39827 0 0 1 0 1 Nucleus 1 0.500231643977644 1 0.999536712044713 hm5C_site_39126 DeepMRMD:1;iRNA_m5C:0.999536712044713 39127 chr17 7838350 7838350 1 + G A UCEC 7838362 + 7838342 7838382 41 CAGCCCAAGCCCTGGAGGAGCTGTTTCCCCGCTACACCAGC CAGCCCAAACCCTGGAGGAGCTGTTTCCCCGCTACACCAGC < 41bp 1 0.161614931744154 1 0.0803281962871552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTROB ENSG00000170037 CDS Human protein_coding chr17:7838362 chr17:7838350 nonsynonymous SNV 0.946 4 9 hm5C_associated_SNPs_39828 0 0 1 0 1 Nucleus 1 0.500231643902496 1 0.999536712195009 hm5C_site_39127 DeepMRMD:1;iRNA_m5C:0.999536712195009 39128 chr4 103522107 103522107 1 + G T UCEC 103522101 + 103522081 103522121 41 ATTCTCAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT ATTCTCAACTTGTGAGGGATCTACTATAAGTCACATCTGGT < 41bp 1 0.177742008244354 1 0.435966968536377 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103522101 chr4:103522107 stopgain 0.993 0 27 hm5C_associated_SNPs_39829 0 0 1 0 1 Ribosome 1 0.500231640875511 1 0.999536718248978 hm5C_site_39128 DeepMRMD:1;iRNA_m5C:0.999536718248978 39129 chr1 161719602 161719602 1 + C T UCEC 161719587 + 161719567 161719607 41 AGCCGCCTTGTCTCTGGGCGCGGCCATGTTGGAGGCTCCGG AGCCGCCTTGTCTCTGGGCGCGGCCATGTTGGAGGTTCCGG < 41bp 1 0.537095399036526 1 0.224214553833008 experiment 0.925809201926947 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DUSP12 ENSG00000081721 CDS Human protein_coding chr1:161719587 chr1:161719602 nonsynonymous SNV 0.196 0 36 hm5C_associated_SNPs_39830 0 0 1 0 0 Ribosome 1 0.500231645377824 1 0.999536709244353 hm5C_site_39129 DeepMRMD:1;iRNA_m5C:0.999536709244353 39130 chr11 71946468 71946468 1 + C T UCEC 71946459 + 71946439 71946479 41 GCTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACC GCTCCATGAAGGTGCGGGTGCCCACGGAGTGCCTGGGCACC < 41bp 1 0.0951028818933191 1 0.101585388183594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946459 chr11:71946468 nonsynonymous SNV 0.997 4 30 hm5C_associated_SNPs_39832 0 0 1 0 1 Cytosol 1 0.500231643917084 1 0.999536712165833 hm5C_site_39130 DeepMRMD:1;iRNA_m5C:0.999536712165833 39131 chr11 71946468 71946468 1 + C T UCEC 71946460 + 71946440 71946480 41 CTCCATGAAGGTGCGGGTGCCCACGGAGCGCCTGGGCACCC CTCCATGAAGGTGCGGGTGCCCACGGAGTGCCTGGGCACCC < 41bp 1 0.320692048677404 1 0.188982576131821 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946460 chr11:71946468 nonsynonymous SNV 0.997 4 29 hm5C_associated_SNPs_39833 0 0 1 0 1 Cytosol 1 0.500230163670168 1 0.999539672659664 hm5C_site_39131 DeepMRMD:1;iRNA_m5C:0.999539672659664 39132 chr11 71946468 71946468 1 + C T UCEC 71946476 + 71946456 71946496 41 GTGCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGG GTGCCCACGGAGTGCCTGGGCACCCGTGAGCGGCTCTACGG < 41bp 1 0.410197184578259 1 0.0302527844905853 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946476 chr11:71946468 nonsynonymous SNV 0.997 4 13 hm5C_associated_SNPs_39834 0 0 1 0 1 Cytosol 1 0.50022586825425 1 0.9995482634915 hm5C_site_39132 DeepMRMD:1;iRNA_m5C:0.9995482634915 39133 chr11 71946468 71946468 1 + C T UCEC 71946478 + 71946458 71946498 41 GCCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTG GCCCACGGAGTGCCTGGGCACCCGTGAGCGGCTCTACGGTG < 41bp 1 0.364747660015713 1 0.0756767988204956 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946478 chr11:71946468 nonsynonymous SNV 0.997 4 11 hm5C_associated_SNPs_39835 0 0 1 0 1 Cytosol 1 0.500231643919976 1 0.999536712160048 hm5C_site_39133 DeepMRMD:1;iRNA_m5C:0.999536712160048 39134 chr11 71946468 71946468 1 + C T UCEC 71946479 + 71946459 71946499 41 CCCACGGAGCGCCTGGGCACCCGTGAGCGGCTCTACGGTGG CCCACGGAGTGCCTGGGCACCCGTGAGCGGCTCTACGGTGG < 41bp 1 0.189207649910988 1 0.379650801420212 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946479 chr11:71946468 nonsynonymous SNV 0.997 4 10 hm5C_associated_SNPs_39836 0 0 1 0 1 Cytosol 1 0.500231608459517 1 0.999536783080967 hm5C_site_39134 DeepMRMD:1;iRNA_m5C:0.999536783080967 39135 chr9 139752716 139752716 1 + T A UCEC 139752709 + 139752689 139752729 41 GATGATCTGCTCCTCCAGGACGGGCCCTGCCCTCAGCCAGG GATGATCTGCTCCTCCAGGACGGGCCCAGCCCTCAGCCAGG < 41bp 1 0.529347163691863 1 0.768393099308014 experiment 0.941305672616275 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139752709 chr9:139752716 nonsynonymous SNV 0.947 4 28 hm5C_associated_SNPs_39839 0 0 1 0 2 chromatin 1 0.500231643927881 0.463213801383972 0.999536712144237 hm5C_site_39135 DeepMRMD:0.463213801383972;iRNA_m5C:0.999536712144237 39136 chr3 107524250 107524250 1 + A G UCEC 107524266 + 107524246 107524286 41 ATGGACAGCCAAAAGAAATGCCGCAGGCTCCTGTACTTATT ATGGGCAGCCAAAAGAAATGCCGCAGGCTCCTGTACTTATT < 41bp 1 0.520374077675059 1 0.239234089851379 experiment 0.959251844649881 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BBX ENSG00000114439 CDS Human protein_coding chr3:107524266 chr3:107524250 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_39840 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39136 DeepMRMD:1;iRNA_m5C:0.999536712157815 39137 chr3 50091823 50091823 1 + G T UCEC 50091805 + 50091785 50091825 41 TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAAGAG TGGGCACCGATCTTCCTGTTCATTCTGCAAGAACCCAATAG < 41bp 1 0.0648999082664504 1 0.0214432179927826 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091805 chr3:50091823 stopgain 0.950 1 39 hm5C_associated_SNPs_39841 0 0 1 0 1 Nucleus 1 0.500231640492835 1 0.99953671901433 hm5C_site_39137 DeepMRMD:1;iRNA_m5C:0.99953671901433 39138 chrX 46433937 46433937 1 + G A UCEC 46433942 + 46433922 46433962 41 AATCTTACCACGGCCGCCCTCTTCCGCTGGCGGACTAACAA AATCTTACCACGGCCACCCTCTTCCGCTGGCGGACTAACAA < 41bp 1 0.229256856978467 1 0.433209836483002 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHST7 ENSG00000147119 CDS Human protein_coding chrX:46433942 chrX:46433937 nonsynonymous SNV 0.592 1 16 hm5C_associated_SNPs_39842 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921135 1 0.999536712157731 hm5C_site_39138 DeepMRMD:1;iRNA_m5C:0.999536712157731 39139 chr16 57486761 57486761 1 + G A UCEC 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAACAGTTGCAGCACCGCATCCTGACGGCAGCCCTT < 41bp 1 0.57701284986109 1 0.720412135124207 experiment 0.84597430027782 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486761 synonymous SNV . 0 8 hm5C_associated_SNPs_39843 0 0 1 0 2 Ribosome 1 0.500231643920582 0.559175729751586 0.999536712158837 hm5C_site_39139 DeepMRMD:0.559175729751586;iRNA_m5C:0.999536712158837 39140 chr2 232035381 232035381 1 + A G UCEC 232035362 + 232035342 232035382 41 ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAAC ACCTGTGGCAGCACATGGCCCAAAAATCGAGGAGGAGGAGC < 41bp 1 0.599132921080127 1 0.0963594019412994 experiment 0.801734157839746 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232035362 chr2:232035381 synonymous SNV . 0 40 hm5C_associated_SNPs_39844 0 0 1 0 1 Nucleus 1 0.500230587134202 1 0.999538825731596 hm5C_site_39140 DeepMRMD:1;iRNA_m5C:0.999538825731596 39141 chr7 91735008 91735008 1 + C T UCEC 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTTTTGGTTTGACGGTGGCATCGAGTCACAGGTTCTGTT < 41bp 1 0.109460808164268 1 0.203256607055664 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735008 stopgain 0.998 0 12 hm5C_associated_SNPs_39845 0 0 1 0 2 Nucleus 1 0.500231643921814 1 0.999536712156372 hm5C_site_39141 DeepMRMD:1;iRNA_m5C:0.999536712156372 39142 chr19 541474 541474 1 + C T UCEC 541454 + 541434 541474 41 CGCCCGACGAGGGCTCAGACCTCTTCTACGACGACTACTAC CGCCCGACGAGGGCTCAGACCTCTTCTACGACGACTACTAT < 41bp 1 0.169433779614673 1 0.22138300538063 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC34 ENSG00000099804 CDS Human protein_coding chr19:541454 chr19:541474 synonymous SNV . 0 41 hm5C_associated_SNPs_39847 0 0 1 0 0 Ribosome 1 0.500231619922324 1 0.999536760155352 hm5C_site_39142 DeepMRMD:1;iRNA_m5C:0.999536760155352 39143 chr1 1564879 1564879 1 + C T UCEC 1564862 + 1564842 1564882 41 ACGTGGGCGCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTG ACGTGGGCGCCGCGCCGGGGCCCGAGGCCGCTGAGTGTCTG < 41bp 1 0.683671164387997 1 0.302550882101059 experiment 0.632657671224006 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564862 chr1:1564879 synonymous SNV . 0 38 hm5C_associated_SNPs_39848 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39143 DeepMRMD:1;iRNA_m5C:0.999536712157815 39144 chr1 1564879 1564879 1 + C T UCEC 1564863 + 1564843 1564883 41 CGTGGGCGCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTGG CGTGGGCGCCGCGCCGGGGCCCGAGGCCGCTGAGTGTCTGG < 41bp 1 0.436520597327122 1 0.660103321075439 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564863 chr1:1564879 synonymous SNV . 0 37 hm5C_associated_SNPs_39849 0 0 1 0 0 Ribosome 1 0.500231643934104 0.679793357849122 0.999536712131792 hm5C_site_39144 DeepMRMD:0.679793357849122;iRNA_m5C:0.999536712131792 39145 chr1 1564879 1564879 1 + C T UCEC 1564864 + 1564844 1564884 41 GTGGGCGCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTGGT GTGGGCGCCGCGCCGGGGCCCGAGGCCGCTGAGTGTCTGGT < 41bp 1 0.570734865240233 1 0.73281317949295 experiment 0.858530269519533 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564864 chr1:1564879 synonymous SNV . 0 36 hm5C_associated_SNPs_39850 0 0 1 0 0 Ribosome 1 0.500231643921092 0.5343736410141 0.999536712157815 hm5C_site_39145 DeepMRMD:0.5343736410141;iRNA_m5C:0.999536712157815 39146 chr1 1564879 1564879 1 + C T UCEC 1564869 + 1564849 1564889 41 CGCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTGGTGTGCT CGCCGCGCCGGGGCCCGAGGCCGCTGAGTGTCTGGTGTGCT < 41bp 1 0.227084378317038 1 0.217545986175537 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564869 chr1:1564879 synonymous SNV . 0 31 hm5C_associated_SNPs_39851 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_39146 DeepMRMD:1;iRNA_m5C:0.999536712157816 39147 chr1 1564879 1564879 1 + C T UCEC 1564870 + 1564850 1564890 41 GCCGCGCCGGGGCCCGAGGCCGCTGAGTGCCTGGTGTGCTC GCCGCGCCGGGGCCCGAGGCCGCTGAGTGTCTGGTGTGCTC < 41bp 1 0.550613578925217 1 0.439060181379318 experiment 0.898772842149565 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564870 chr1:1564879 synonymous SNV . 0 30 hm5C_associated_SNPs_39852 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39147 DeepMRMD:1;iRNA_m5C:0.999536712157815 39148 chr9 137702141 137702141 1 + A G UCEC 137702152 + 137702132 137702172 41 GCAAGGGGGACAAAGGAGAACAGGTAAGTATTGGCACGGGG GCAAGGGGGGCAAAGGAGAACAGGTAAGTATTGGCACGGGG < 41bp 1 0.507469593614506 1 0.581946849822998 experiment 0.985060812770988 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137702152 chr9:137702141 nonsynonymous SNV 0.973 2 10 hm5C_associated_SNPs_39853 0 0 0 0 2 Nucleus 1 0.500231643921811 0.836106300354004 0.999536712156377 hm5C_site_39148 DeepMRMD:0.836106300354004;iRNA_m5C:0.999536712156377 39149 chr20 39977792 39977792 1 + C T UCEC 39977802 + 39977782 39977822 41 ACTCGGATGGCGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC ACTCGGATGGTGAGTGGCCCCCCCAGGCCAGGTAAGAGTCC < 41bp 1 0.571116387124034 1 0.433913618326187 experiment 0.857767225751933 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977802 chr20:39977792 synonymous SNV . 0 11 hm5C_associated_SNPs_39854 0 0 1 0 3 Nucleus 1 0.500231643921113 1 0.999536712157774 hm5C_site_39149 DeepMRMD:1;iRNA_m5C:0.999536712157774 39150 chr6 7578787 7578787 1 + G T UCEC 7578790 + 7578770 7578810 41 TGCTGAAGAGTTTGGAAGATCTGAAGGTAATTTATACTGTC TGCTGAAGAGTTTGGAATATCTGAAGGTAATTTATACTGTC < 41bp 1 0.632528505835512 1 0.503294348716736 experiment 0.734942988328976 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7578790 chr6:7578787 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_39855 0 0 1 0 2 Nucleus 1 0.500231643908337 0.993411302566528 0.999536712183327 hm5C_site_39150 DeepMRMD:0.993411302566528;iRNA_m5C:0.999536712183327 39151 chrX 152958980 152958980 1 + C A UCEC 152958977 + 152958957 152958997 41 TTCTTTGCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCAT TTCTTTGCTGGCTTCGTGGTCTTATCCATCCTGGGCTTCAT < 41bp 1 0.0850808943971229 1 0.0371498763561249 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958977 chrX:152958980 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_39856 0 0 1 0 3 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_39151 DeepMRMD:1;iRNA_m5C:0.99953671215781 39152 chrX 152958980 152958980 1 + C A UCEC 152958983 + 152958963 152959003 41 GCTGGCTTCGTGGTCTTCTCCATCCTGGGCTTCATGGCTGC GCTGGCTTCGTGGTCTTATCCATCCTGGGCTTCATGGCTGC < 41bp 1 0.326621366231245 1 0.646557509899139 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958983 chrX:152958980 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_39857 0 0 1 0 3 Ribosome 1 0.500231643921092 0.706884980201722 0.999536712157815 hm5C_site_39152 DeepMRMD:0.706884980201722;iRNA_m5C:0.999536712157815 39153 chr5 15937011 15937011 1 + G A UCEC 15937013 + 15936993 15937033 41 CACGGTGTGGAGTACCTCGCCAAGAACTGCACCAAACTCAA CACGGTGTGGAGTACCTCACCAAGAACTGCACCAAACTCAA < 41bp 1 0.644020049528989 1 0.756415843963623 experiment 0.711959900942022 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXL7 ENSG00000183580 CDS Human protein_coding chr5:15937013 chr5:15937011 nonsynonymous SNV 0.996 4 19 hm5C_associated_SNPs_39858 0 0 0 0 0 exosome 1 0.500231645588063 0.487168312072754 0.999536708823874 hm5C_site_39153 DeepMRMD:0.487168312072754;iRNA_m5C:0.999536708823874 39154 chr12 62918958 62918958 1 + C A UCEC 62918965 + 62918945 62918985 41 ACAGTCCTTGTTTCTTGTCCCCCCTACTGGAAATCCTGCAA ACAGTCCTTGTTTATTGTCCCCCCTACTGGAAATCCTGCAA < 41bp 1 0.138494895983404 1 0.0526989698410034 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62918965 chr12:62918958 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_39859 0 0 1 0 2 Nucleus 1 0.500231643921425 1 0.999536712157151 hm5C_site_39154 DeepMRMD:1;iRNA_m5C:0.999536712157151 39155 chr1 6679984 6679984 1 + G A UCEC 6679994 + 6679974 6680014 41 GTCTCTGACCGCTGCTTTAGCCACCTGCAGCCTACTCTCTT GTCTCTGACCACTGCTTTAGCCACCTGCAGCCTACTCTCTT < 41bp 1 0.182334655701098 1 0.0517545938491821 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6679994 chr1:6679984 nonsynonymous SNV 0.990 1 11 hm5C_associated_SNPs_39861 0 0 1 0 0 cytosol 1 0.500231643889298 1 0.999536712221403 hm5C_site_39155 DeepMRMD:1;iRNA_m5C:0.999536712221403 39156 chr1 6679984 6679984 1 + G A UCEC 6679997 + 6679977 6680017 41 TCTGACCGCTGCTTTAGCCACCTGCAGCCTACTCTCTTGCA TCTGACCACTGCTTTAGCCACCTGCAGCCTACTCTCTTGCA < 41bp 1 0.0805039485065633 1 0.0999139547348022 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6679997 chr1:6679984 nonsynonymous SNV 0.990 1 8 hm5C_associated_SNPs_39862 0 0 1 0 0 cytosol 1 0.500231829469414 1 0.999536341061171 hm5C_site_39156 DeepMRMD:1;iRNA_m5C:0.999536341061171 39157 chr2 102486863 102486863 1 + C A UCEC 102486859 + 102486839 102486879 41 ATGACCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGGT ATGACCCCATCCAAGGAGGGCACTATAATCGTCCGCCAGGT < 41bp 1 0.363779324390321 1 0.150576144456863 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486859 chr2:102486863 nonsynonymous SNV 0.786 4 25 hm5C_associated_SNPs_39863 0 0 1 0 1 Ribosome 1 0.500231643920327 1 0.999536712159347 hm5C_site_39157 DeepMRMD:1;iRNA_m5C:0.999536712159347 39158 chr19 42398354 42398354 1 + C T UCEC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAAGAAGTTGGGGAGGAACTTCTTCCGGAAAAAGGTGCT < 41bp 1 0.139099956382415 1 0.349216103553772 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398354 nonsynonymous SNV 0.989 0 11 hm5C_associated_SNPs_39865 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_39158 DeepMRMD:1;iRNA_m5C:0.999536712157816 39159 chr17 57743540 57743540 1 + G A UCEC 57743560 + 57743540 57743580 41 GCCCATCTGAAGGTCCTTTACAGACGCGGTTACTTGAGATG ACCCATCTGAAGGTCCTTTACAGACGCGGTTACTTGAGATG < 41bp 1 0.529292357303803 1 0.295281320810318 experiment 0.941415285392393 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57743560 chr17:57743540 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_39867 0 0 1 0 2 Nucleus 1 0.500231643921088 1 0.999536712157823 hm5C_site_39159 DeepMRMD:1;iRNA_m5C:0.999536712157823 39160 chr16 29912732 29912732 1 + G A UCEC 29912748 + 29912728 29912768 41 GTGAGCCGGCGGCTTCGGGCCTACGCAAGGCGCTACTCCTG GTGAACCGGCGGCTTCGGGCCTACGCAAGGCGCTACTCCTG < 41bp 1 0.623552462730191 1 0.459950357675552 experiment 0.752895074539618 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASPHD1 ENSG00000174939 CDS Human protein_coding chr16:29912748 chr16:29912732 nonsynonymous SNV 0.986 0 5 hm5C_associated_SNPs_39868 0 0 1 0 0 nucleus 1 0.500231643921166 1 0.999536712157669 hm5C_site_39160 DeepMRMD:1;iRNA_m5C:0.999536712157669 39161 chr4 155665961 155665961 1 + C T UCEC 155665967 + 155665947 155665987 41 CTGTGGAACAACTGCGAGCACTTCGTGACCTACTGCAGATA CTGTGGAACAACTGTGAGCACTTCGTGACCTACTGCAGATA < 41bp 1 0.394418791509254 1 0.117913424968719 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRAT ENSG00000121207 CDS Human protein_coding chr4:155665967 chr4:155665961 synonymous SNV . 0 15 hm5C_associated_SNPs_39869 0 0 0 0 1 Nucleus 1 0.500229287281363 1 0.999541425437274 hm5C_site_39161 DeepMRMD:1;iRNA_m5C:0.999541425437274 39162 chr1 10332308 10332308 1 + A G UCEC 10332306 + 10332286 10332326 41 GTATTTATTTTAGGAAGGAGCAAATATTAATAAGTCTCTTA GTATTTATTTTAGGAAGGAGCAGATATTAATAAGTCTCTTA < 41bp 1 0.0605178372396724 1 0.376817852258682 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10332306 chr1:10332308 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_39870 0 0 1 2 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39162 DeepMRMD:1;iRNA_m5C:0.999536712157815 39163 chr16 68331170 68331170 1 + T G UCEC 68331160 + 68331140 68331180 41 CTATCACCAGAGGCACCCAGCAGCTTTGCTTTTGTGTCCTG CTATCACCAGAGGCACCCAGCAGCTTTGCTGTTGTGTCCTG < 41bp 1 0.48689899649779 1 0.509121537208557 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68331160 chr16:68331170 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_39871 0 0 1 0 1 Ribosome 1 0.500231643897926 0.981756925582886 0.999536712204147 hm5C_site_39163 DeepMRMD:0.981756925582886;iRNA_m5C:0.999536712204147 39164 chr3 119198923 119198923 1 + A G UCEC 119198909 + 119198889 119198929 41 TTGTTGAAGACATCAGAGTACCATGATATCATGTATCCTGC TTGTTGAAGACATCAGAGTACCATGATATCATGTGTCCTGC < 41bp 1 0.409963146352913 1 0.0632156729698181 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119198909 chr3:119198923 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_39872 0 0 0 0 2 Ribosome 1 0.500185736063644 1 0.999628527872712 hm5C_site_39164 DeepMRMD:1;iRNA_m5C:0.999628527872712 39165 chr15 64410388 64410388 1 + C A UCEC 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTATCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC < 41bp 1 0.227124900198793 1 0.223765730857849 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410388 nonsynonymous SNV 0.968 1 3 hm5C_associated_SNPs_39873 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39165 DeepMRMD:1;iRNA_m5C:0.999536712157815 39166 chr2 99938453 99938453 1 + T A UCEC 99938444 - 99938424 99938464 41 GAAACTTTAGAATGGAGGCTCGGTTCTTCTGACATTCTTAA GAAACTTTAGATTGGAGGCTCGGTTCTTCTGACATTCTTAA < 41bp 1 0.237400649874581 1 0.0859892964363098 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TXNDC9 ENSG00000115514 CDS Human protein_coding chr2:99938444 chr2:99938453 nonsynonymous SNV 0.997 4 12 hm5C_associated_SNPs_39874 0 0 1 0 1 Cytosol 1 0.500231643923518 1 0.999536712152964 hm5C_site_39166 DeepMRMD:1;iRNA_m5C:0.999536712152964 39167 chr16 2811602 2811602 1 + G A UCEC 2811603 + 2811583 2811623 41 CCCTCTCCGGAAAGGAGCAGCACAGGCCCAGAACCACCTGC CCCTCTCCGGAAAGGAGCAACACAGGCCCAGAACCACCTGC < 41bp 1 0.465420282723104 1 0.596922278404236 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2811603 chr16:2811602 nonsynonymous SNV 0.994 0 20 hm5C_associated_SNPs_39875 0 0 1 0 1 Nucleus 1 0.500231643921092 0.806155443191528 0.999536712157815 hm5C_site_39167 DeepMRMD:0.806155443191528;iRNA_m5C:0.999536712157815 39168 chr7 135312785 135312785 1 + C A UCEC 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTATCCTC < 41bp 1 0.454079274263536 1 0.129653722047806 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312785 nonsynonymous SNV 0.995 4 36 hm5C_associated_SNPs_39878 0 0 1 1 2 Cytosol 1 0.500231643920116 1 0.999536712159768 hm5C_site_39168 DeepMRMD:1;iRNA_m5C:0.999536712159768 39169 chr16 31087727 31087727 1 + G T UCEC 31087730 + 31087710 31087750 41 AGCTCTCTCGGCACCGAGAACTGCTCCATCCATCTCCCAAC AGCTCTCTCGGCACCGATAACTGCTCCATCCATCTCCCAAC < 41bp 1 0.411591676199973 1 0.079298347234726 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31087730 chr16:31087727 stopgain 0.997 0 18 hm5C_associated_SNPs_39879 0 0 1 0 0 Endoplasmic reticulum 1 0.500231648056364 1 0.999536703887272 hm5C_site_39169 DeepMRMD:1;iRNA_m5C:0.999536703887272 39170 chr2 60987393 60987393 1 + T G UCEC 60987390 + 60987370 60987410 41 AATTAATTGACGCCATGAAACCATTTGGAGTGTTTGAAGAT AATTAATTGACGCCATGAAACCAGTTGGAGTGTTTGAAGAT < 41bp 1 0.290536339566244 1 0.211196959018707 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLG ENSG00000115421 CDS Human protein_coding chr2:60987390 chr2:60987393 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_39880 0 0 1 0 1 chromatin 1 0.500231643925746 1 0.999536712148507 hm5C_site_39170 DeepMRMD:1;iRNA_m5C:0.999536712148507 39171 chr22 31485788 31485788 1 + G A UCEC 31485804 + 31485784 31485824 41 CTGCGAGCCCCACCTGGGAGCACATCCAGCTCACCTGCCTC CTGCAAGCCCCACCTGGGAGCACATCCAGCTCACCTGCCTC < 41bp 1 0.1805293862185 1 0.0975070595741272 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMTN ENSG00000183963 CDS Human protein_coding chr22:31485804 chr22:31485788 nonsynonymous SNV 0.190 3 5 hm5C_associated_SNPs_39881 0 0 1 0 0 Cytosol 1 0.500231643923437 1 0.999536712153126 hm5C_site_39171 DeepMRMD:1;iRNA_m5C:0.999536712153126 39172 chrX 69699063 69699063 1 + G A UCEC 69699058 + 69699038 69699078 41 GAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGGGTC GAACAAATGATGAACAGCAGCATGAACTCTGGGTCTGGGTC < 41bp 1 0.351438557572926 1 0.314038217067719 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLG3 ENSG00000082458 CDS Human protein_coding chrX:69699058 chrX:69699063 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_39882 2 0 1 0 2 Ribosome 1 0.500231642973451 1 0.999536714053098 hm5C_site_39172 DeepMRMD:1;iRNA_m5C:0.999536714053098 Seizure Disorders Seizure Disorders 39173 chr20 31021481 31021481 1 + C T UCEC 31021472 + 31021452 31021492 41 AGTCTGTGGCTTCTCGGATCCAGGCTGAGCCAGACAACTTG AGTCTGTGGCTTCTCGGATCCAGGCTGAGTCAGACAACTTG < 41bp 1 0.587176666491593 1 0.480142533779144 experiment 0.825646667016813 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021472 chr20:31021481 nonsynonymous SNV 0.011 0 30 hm5C_associated_SNPs_39883 0 0 1 0 0 Nucleus 1 0.500231644039095 1 0.99953671192181 hm5C_site_39173 DeepMRMD:1;iRNA_m5C:0.99953671192181 39174 chr15 43632484 43632484 1 + G T UCEC 43632491 + 43632471 43632511 41 AGATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC AGATGTCATAAAATAATTTGCAGATGACGGCGTCAAGTACC < 41bp 1 0.426643839627595 1 0.53181117773056 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADAL ENSG00000168803 CDS Human protein_coding chr15:43632491 chr15:43632484 stopgain 1.000 1 14 hm5C_associated_SNPs_39884 0 0 1 0 1 chromatin 1 0.50023495272291 0.93637764453888 0.999530094554181 hm5C_site_39174 DeepMRMD:0.93637764453888;iRNA_m5C:0.999530094554181 39175 chr13 113732686 113732686 1 + G A UCEC 113732702 + 113732682 113732722 41 CGGCGAGGCTCTGAGAACTCCAGCTCCGAGGGCGGTGCGCT CGGCAAGGCTCTGAGAACTCCAGCTCCGAGGGCGGTGCGCT < 41bp 1 0.310461294985887 1 0.409554779529572 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113732702 chr13:113732686 nonsynonymous SNV 0.096 2 5 hm5C_associated_SNPs_39885 0 0 1 0 2 Cytosol 1 0.50023163966592 1 0.999536720668161 hm5C_site_39175 DeepMRMD:1;iRNA_m5C:0.999536720668161 39176 chr15 91448699 91448699 1 + G T UCEC 91448697 + 91448677 91448717 41 CCATCTCCCCGCAGGACTGCCAGTTTGCTTTGGGGGGCCGG CCATCTCCCCGCAGGACTGCCATTTTGCTTTGGGGGGCCGG < 41bp 1 0.0719303220142403 1 0.0620226860046387 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91448697 chr15:91448699 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_39886 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_39176 DeepMRMD:1;iRNA_m5C:0.999536712157815 39177 chr17 40985593 40985593 1 + C A UCEC 40985592 + 40985572 40985612 41 TCAGGTCCCTCCGGCCCCCTCCCTGGAGTCCACAGCGCCTC TCAGGTCCCTCCGGCCCCCTCACTGGAGTCCACAGCGCCTC < 41bp 1 0.683369593857527 1 0.274249255657196 experiment 0.633260812284945 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSME3 ENSG00000131467 UTR5 Human protein_coding chr17:40985592 chr17:40985593 . . 0 22 hm5C_associated_SNPs_39887 0 0 1 0 1 Cytosol 1 0.500231635301853 1 0.999536729396294 hm5C_site_39177 DeepMRMD:1;iRNA_m5C:0.999536729396294 39178 chr11 34969146 34969146 1 + A C UCEC 34969143 + 34969123 34969163 41 AAGTGATGATGGAATCTTGGCCAAAATCGTGGTAAGTTTTT AAGTGATGATGGAATCTTGGCCACAATCGTGGTAAGTTTTT < 41bp 1 0.208838957133369 1 0.0735926032066345 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969143 chr11:34969146 nonsynonymous SNV 0.971 3 24 hm5C_associated_SNPs_39888 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39178 DeepMRMD:1;iRNA_m5C:0.999536712157815 39179 chr11 34969146 34969146 1 + A C UCEC 34969150 + 34969130 34969170 41 GATGGAATCTTGGCCAAAATCGTGGTAAGTTTTTATTTTAA GATGGAATCTTGGCCACAATCGTGGTAAGTTTTTATTTTAA < 41bp 1 0.663463223585425 1 0.939945220947266 experiment 0.673073552829151 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PDHX ENSG00000110435 CDS Human protein_coding chr11:34969150 chr11:34969146 nonsynonymous SNV 0.971 3 17 hm5C_associated_SNPs_39889 0 0 1 0 2 Ribosome 1 0.500231644531997 0.120109558105468 0.999536710936005 hm5C_site_39179 DeepMRMD:0.120109558105468;iRNA_m5C:0.999536710936005 39180 chr3 141595722 141595722 1 + G T UCEC 141595736 + 141595716 141595756 41 ACCGGAGAATTCCTGGGGCGCACCGCCAAGAGCTGGGGTGA ACCGGATAATTCCTGGGGCGCACCGCCAAGAGCTGGGGTGA < 41bp 1 0.637788948470541 1 0.120325952768326 experiment 0.724422103058918 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141595736 chr3:141595722 stopgain 0.419 1 7 hm5C_associated_SNPs_39890 0 0 1 0 1 Ribosome 1 0.500231643921167 1 0.999536712157666 hm5C_site_39180 DeepMRMD:1;iRNA_m5C:0.999536712157666 39181 chr10 106019443 106019443 1 + G A UCEC 106019431 + 106019411 106019451 41 TTCTGGAAAACAGTCAGGGTCAGCTGATCTACGAGTCTGCC TTCTGGAAAACAGTCAGGGTCAGCTGATCTACAAGTCTGCC < 41bp 1 0.515871199453461 1 0.106287270784378 experiment 0.968257601093078 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106019431 chr10:106019443 nonsynonymous SNV 0.704 4 33 hm5C_associated_SNPs_39892 0 0 1 0 0 Ribosome 1 0.500231643921104 1 0.999536712157791 hm5C_site_39181 DeepMRMD:1;iRNA_m5C:0.999536712157791 39182 chr15 64429083 64429083 1 + G T UCEC 64429070 + 64429050 64429090 41 TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAAGAACCACG TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAATAACCACG < 41bp 1 0.155170613254055 1 0.377209514379501 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64429070 chr15:64429083 nonsynonymous SNV 0.992 3 34 hm5C_associated_SNPs_39893 0 0 1 0 2 Ribosome 1 0.500231644950063 1 0.999536710099873 hm5C_site_39182 DeepMRMD:1;iRNA_m5C:0.999536710099873 39183 chr1 233489679 233489679 1 + G A UCEC 233489675 + 233489655 233489695 41 GCCCATTCCATCCACCTGCCCTGAGCCGTTTGCCAAGCTCA GCCCATTCCATCCACCTGCCCTGAACCGTTTGCCAAGCTCA < 41bp 1 0.478900253403973 1 0.197426319122314 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233489675 chr1:233489679 synonymous SNV . 0 25 hm5C_associated_SNPs_39894 0 0 1 0 1 unknown 1 0.500231846158291 1 0.999536307683419 hm5C_site_39183 DeepMRMD:1;iRNA_m5C:0.999536307683419 39184 chr5 132427048 132427048 1 + G A UCEC 132427041 + 132427021 132427061 41 AAATGAGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGG AAATGAGGAGCCAATGGAAACAGATCAAAATGCAAAGGAGG < 41bp 1 0.288227594805381 1 0.550541460514069 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427041 chr5:132427048 synonymous SNV . 0 28 hm5C_associated_SNPs_39895 0 0 1 0 1 Cytosol 1 0.500231046628097 0.898917078971862 0.999537906743806 hm5C_site_39184 DeepMRMD:0.898917078971862;iRNA_m5C:0.999537906743806 39185 chr5 132427048 132427048 1 + G A UCEC 132427046 + 132427026 132427066 41 AGGAGCCAATGGAAACAGATCAGAATGCAAAGGAGGAAGAG AGGAGCCAATGGAAACAGATCAAAATGCAAAGGAGGAAGAG < 41bp 1 0.610801574231271 1 0.221104562282562 experiment 0.778396851537458 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427046 chr5:132427048 synonymous SNV . 0 23 hm5C_associated_SNPs_39896 0 0 1 0 1 Cytosol 1 0.500231643921099 1 0.999536712157802 hm5C_site_39185 DeepMRMD:1;iRNA_m5C:0.999536712157802 39186 chr5 132427048 132427048 1 + G A UCEC 132427053 + 132427033 132427073 41 AATGGAAACAGATCAGAATGCAAAGGAGGAAGAGGTAATCT AATGGAAACAGATCAAAATGCAAAGGAGGAAGAGGTAATCT < 41bp 1 0.545325330821503 1 0.330204725265503 experiment 0.909349338356994 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132427053 chr5:132427048 synonymous SNV . 0 16 hm5C_associated_SNPs_39897 0 0 1 0 1 Cytosol 1 0.500231643915997 1 0.999536712168007 hm5C_site_39186 DeepMRMD:1;iRNA_m5C:0.999536712168007 39187 chr10 120867630 120867630 1 + T C UCEC 120867616 + 120867596 120867636 41 CCCTTTGTCTTTGGTCAGTACAGAAGAACATGGTTTTATAT CCCTTTGTCTTTGGTCAGTACAGAAGAACATGGTCTTATAT < 41bp 1 0.674608654515212 1 0.449964940547943 experiment 0.650782690969576 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM45A ENSG00000119979 CDS Human protein_coding chr10:120867616 chr10:120867630 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_39898 0 0 1 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39187 DeepMRMD:1;iRNA_m5C:0.999536712157815 39188 chr1 26142120 26142120 1 + T G UCEC 26142138 + 26142118 26142158 41 TCTCATCCACCTTTGAAGACCCGTCCACGGCCACCTACATG TCGCATCCACCTTTGAAGACCCGTCCACGGCCACCTACATG < 41bp 1 0.0222194605834183 1 0.153045922517776 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26142138 chr1:26142120 nonsynonymous SNV 0.998 1 3 hm5C_associated_SNPs_39899 0 0 1 0 1 unknown 1 0.500218784665994 1 0.999562430668011 hm5C_site_39188 DeepMRMD:1;iRNA_m5C:0.999562430668011 39189 chr16 84872300 84872300 1 + C T UCEC 84872297 + 84872277 84872317 41 TCCTCATGCTGCACAACAAGCTTCGGGGCCAGGTGCAGCCT TCCTCATGCTGCACAACAAGCTTTGGGGCCAGGTGCAGCCT < 41bp 1 0.278195822908267 1 0.0568335652351379 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84872297 chr16:84872300 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_39900 0 0 0 0 1 Nucleus 1 0.500231607357587 1 0.999536785284826 hm5C_site_39189 DeepMRMD:1;iRNA_m5C:0.999536785284826 39190 chr19 7918174 7918174 1 + C T UCEC 7918189 + 7918169 7918209 41 GAGTACGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGAT GAGTATGCAGCCATGAAGAGCAAGGAGATGGAGGAGCAGAT < 41bp 1 0.321799516570627 1 0.538842082023621 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EVI5L ENSG00000142459 CDS Human protein_coding chr19:7918189 chr19:7918174 synonymous SNV . 0 6 hm5C_associated_SNPs_39901 0 0 0 0 2 Ribosome 1 0.500231643923771 0.922315835952758 0.999536712152459 hm5C_site_39190 DeepMRMD:0.922315835952758;iRNA_m5C:0.999536712152459 39191 chr2 233656064 233656064 1 + A C UCEC 233656051 + 233656031 233656071 41 ATCAGTCTCAGGAAGCATCACAGTTTGAGAGGAAAGATGAA ATCAGTCTCAGGAAGCATCACAGTTTGAGAGGACAGATGAA < 41bp 1 0.180529232049735 1 0.382205903530121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233656051 chr2:233656064 nonsynonymous SNV 0.896 1 34 hm5C_associated_SNPs_39902 0 0 1 0 3 Nucleus 1 0.500649927824467 1 0.998700144351066 hm5C_site_39191 DeepMRMD:1;iRNA_m5C:0.998700144351066 39192 chr17 65905780 65905780 1 + T G UCEC 65905785 + 65905765 65905805 41 AATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTAAAAG AATAAAAATAGAGCCGGATTCTGAAAAAGATGAGGTAAAAG < 41bp 1 0.453185524334119 1 0.577202260494232 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65905785 chr17:65905780 synonymous SNV . 0 16 hm5C_associated_SNPs_39904 0 0 1 0 2 Cytosol 1 0.500231644084229 0.845595479011536 0.999536711831542 hm5C_site_39192 DeepMRMD:0.845595479011536;iRNA_m5C:0.999536711831542 39193 chrX 51641229 51641229 1 + C T UCEC 51641235 + 51641215 51641255 41 AAGACACACCCAAGCTCGGTCTCCTCTTGGTGATTCTGGGT AAGACACACCCAAGTTCGGTCTCCTCTTGGTGATTCTGGGT < 41bp 1 0.1811170944123 1 0.459330290555954 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51641235 chrX:51641229 nonsynonymous SNV 0.998 2 15 hm5C_associated_SNPs_39905 0 0 1 0 1 chromatin 1 0.500231643769073 1 0.999536712461853 hm5C_site_39193 DeepMRMD:1;iRNA_m5C:0.999536712461853 39194 chr17 78310129 78310129 1 + A G UCEC 78310125 + 78310105 78310145 41 TCAGTGCATTCATGAAGCATCTGAAAAAGCTGTGGAAGGCT TCAGTGCATTCATGAAGCATCTGAGAAAGCTGTGGAAGGCT < 41bp 1 0.107078227150972 1 0.186830013990402 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78310125 chr17:78310129 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_39906 0 0 1 0 1 Nucleus 1 0.500176651569153 1 0.999646696861694 hm5C_site_39194 DeepMRMD:1;iRNA_m5C:0.999646696861694 39195 chr1 198231750 198231750 1 + G T UCEC 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG AATGGATGCCAAAGCACGTGCTGATTGCATCAAATAAATAG < 41bp 1 0.186938725596926 1 0.126562803983688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231750 stopgain 1.000 1 35 hm5C_associated_SNPs_39907 0 0 0 0 2 Nucleus 1 0.500231588461728 1 0.999536823076544 hm5C_site_39195 DeepMRMD:1;iRNA_m5C:0.999536823076544 39196 chr1 198231750 198231750 1 + G T UCEC 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTGCTGATTGCATCAAATAAATAGATCTTCTTAA < 41bp 1 0.185351351543147 1 0.383521407842636 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231750 stopgain 1.000 1 25 hm5C_associated_SNPs_39908 0 0 0 0 2 Nucleus 1 0.500231404833126 1 0.999537190333748 hm5C_site_39196 DeepMRMD:1;iRNA_m5C:0.999537190333748 39197 chr1 198231750 198231750 1 + G T UCEC 198231762 + 198231742 198231782 41 GCATCAAAGAAATAGATCTTCTTAAGGTAATTAATGAACTG GCATCAAATAAATAGATCTTCTTAAGGTAATTAATGAACTG < 41bp 1 0.406297270858848 1 0.167363405227661 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231762 chr1:198231750 stopgain 1.000 1 9 hm5C_associated_SNPs_39909 0 0 0 0 2 Nucleus 1 0.500231623956747 1 0.999536752086505 hm5C_site_39197 DeepMRMD:1;iRNA_m5C:0.999536752086505 39198 chr9 100757060 100757060 1 + A C UCEC 100757048 + 100757028 100757068 41 TTTCAAATCTCCCCAAGCTGCCTAAATTGAAAAAGGTAAGT TTTCAAATCTCCCCAAGCTGCCTAAATTGAAACAGGTAAGT < 41bp 1 0.111137039260412 1 0.0589461326599121 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100757048 chr9:100757060 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_39910 0 0 1 0 1 Cytosol 1 0.500231630520268 1 0.999536738959464 hm5C_site_39198 DeepMRMD:1;iRNA_m5C:0.999536738959464 39199 chr4 126398357 126398357 1 + C A UCEC 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTTACAGTTGGAGGTATCAGATATCTAGAACCAATCCT < 41bp 1 0.166433794247138 1 0.839367628097534 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398357 nonsynonymous SNV 0.069 2 26 hm5C_associated_SNPs_39911 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921116 0.321264743804932 0.999536712157768 hm5C_site_39199 DeepMRMD:0.321264743804932;iRNA_m5C:0.999536712157768 39200 chr2 242683190 242683190 1 + G A UCEC 242683180 + 242683160 242683200 41 CAACCAACGCTGGAGGCCTGCGGTTTCTTCGATATGGCTCA CAACCAACGCTGGAGGCCTGCGGTTTCTTCAATATGGCTCA < 41bp 1 0.372711450499031 1 0.672147452831268 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242683180 chr2:242683190 nonsynonymous SNV 0.081 3 31 hm5C_associated_SNPs_39912 0 0 1 0 1 Ribosome 1 0.500231644020739 0.655705094337464 0.999536711958521 hm5C_site_39200 DeepMRMD:0.655705094337464;iRNA_m5C:0.999536711958521 39201 chr8 28906493 28906493 1 + T C UCEC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCACGGGA < 41bp 1 0.047713749842657 1 0.141338497400284 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906493 synonymous SNV . 0 37 hm5C_associated_SNPs_39913 0 0 1 0 4 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39201 DeepMRMD:1;iRNA_m5C:0.999536712157815 39202 chr8 28906493 28906493 1 + T C UCEC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCACGGGATAGA < 41bp 1 0.247863487470555 1 0.752012133598328 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906493 synonymous SNV . 0 33 hm5C_associated_SNPs_39914 0 0 1 0 4 Nucleus 1 0.500231643921094 0.495975732803344 0.999536712157813 hm5C_site_39202 DeepMRMD:0.495975732803344;iRNA_m5C:0.999536712157813 39203 chr8 28906493 28906493 1 + T C UCEC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT ACGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.558082188388269 1 0.458048641681671 experiment 0.883835623223462 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906493 synonymous SNV . 0 2 hm5C_associated_SNPs_39915 0 0 1 0 4 Nucleus 1 0.500231654490223 1 0.999536691019554 hm5C_site_39203 DeepMRMD:1;iRNA_m5C:0.999536691019554 39204 chr12 104720158 104720158 1 + A C UCEC 104720169 + 104720149 104720189 41 GCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAA GCTTGCACACGAAAAATTGGCTTAGAAACCGTAGGGGTGAA < 41bp 1 0.218456280853818 1 0.0522008240222931 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TXNRD1 ENSG00000198431 CDS Human protein_coding chr12:104720169 chr12:104720158 synonymous SNV . 0 10 hm5C_associated_SNPs_39916 0 0 1 0 2 Ribosome 1 0.500231643921108 1 0.999536712157784 hm5C_site_39204 DeepMRMD:1;iRNA_m5C:0.999536712157784 Height 39205 chr7 55259436 55259436 1 + C T UCEC 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACCGTTGCTTGGTGCACCGCGA < 41bp 1 0.109450323090619 1 0.29468047618866 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259436 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_39917 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39205 DeepMRMD:1;iRNA_m5C:0.999536712157815 39206 chr7 139094332 139094332 1 + G T UCEC 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGATAAAAGAA < 41bp 1 0.481540293517625 1 0.214548647403717 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094332 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_39918 0 0 1 0 2 unknown 1 0.500231878902602 1 0.999536242194795 hm5C_site_39206 DeepMRMD:1;iRNA_m5C:0.999536242194795 39207 chr7 139094332 139094332 1 + G T UCEC 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG GAGAAGCAGGATAAAAGAAACCAGGAACGGCTGAAACGAAG < 41bp 1 0.396196685411891 1 0.342038631439209 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094332 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_39919 0 0 1 0 2 unknown 1 0.500231643922483 1 0.999536712155034 hm5C_site_39207 DeepMRMD:1;iRNA_m5C:0.999536712155034 39208 chr7 139094332 139094332 1 + G T UCEC 139094348 + 139094328 139094368 41 AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG AGGATAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG < 41bp 1 0.477862129538113 1 0.331618845462799 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094348 chr7:139094332 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_39920 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_39208 DeepMRMD:1;iRNA_m5C:0.999536712157815 39209 chr7 139094332 139094332 1 + G T UCEC 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA ATAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA < 41bp 1 0.51222191901749 1 0.436938643455505 experiment 0.975556161965021 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094332 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_39921 0 0 1 0 2 unknown 1 0.500231643921034 1 0.999536712157933 hm5C_site_39209 DeepMRMD:1;iRNA_m5C:0.999536712157933 39210 chr17 5984205 5984205 1 + G A UCEC 5984212 + 5984192 5984232 41 CTGCACGACCCTCGAGTCAGCCCAGAGCTGCTGCTGGGTGT CTGCACGACCCTCAAGTCAGCCCAGAGCTGCTGCTGGGTGT < 41bp 1 0.285997778877011 1 0.100650161504745 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control WSCD1 ENSG00000179314 CDS Human protein_coding chr17:5984212 chr17:5984205 nonsynonymous SNV 0.002 0 14 hm5C_associated_SNPs_39922 0 0 0 0 0 exosome 1 0.500231643919346 1 0.999536712161308 hm5C_site_39210 DeepMRMD:1;iRNA_m5C:0.999536712161308 39211 chr4 1955184 1955184 1 + C T UCEC 1955190 + 1955170 1955210 41 GAGAGCCGAGGTTTCCGCTGCCCCCTCCACAGCTGTGTGAG GAGAGCCGAGGTTTTCGCTGCCCCCTCCACAGCTGTGTGAG < 41bp 1 0.0801534372392749 1 0.097093790769577 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSD2 ENSG00000109685 CDS Human protein_coding chr4:1955190 chr4:1955184 synonymous SNV . 0 15 hm5C_associated_SNPs_39923 0 0 1 0 1 Nucleus 1 0.500231513901214 1 0.999536972197572 hm5C_site_39211 DeepMRMD:1;iRNA_m5C:0.999536972197572 39212 chr4 1955184 1955184 1 + C T UCEC 1955199 + 1955179 1955219 41 GGTTTCCGCTGCCCCCTCCACAGCTGTGTGAGCTGCCATGC GGTTTTCGCTGCCCCCTCCACAGCTGTGTGAGCTGCCATGC < 41bp 1 0.665492206637195 1 0.21914342045784 experiment 0.669015586725609 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NSD2 ENSG00000109685 CDS Human protein_coding chr4:1955199 chr4:1955184 synonymous SNV . 0 6 hm5C_associated_SNPs_39924 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_39212 DeepMRMD:1;iRNA_m5C:0.999536712157814 39213 chr1 32502610 32502610 1 + C T UCEC 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCTGGGGAGCT < 41bp 1 0.585556438381511 1 0.420644879341125 experiment 0.828887123236978 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502610 nonsynonymous SNV 0.954 1 33 hm5C_associated_SNPs_39925 0 0 1 0 2 Nucleus 1 0.500231643921308 1 0.999536712157383 hm5C_site_39213 DeepMRMD:1;iRNA_m5C:0.999536712157383 39214 chr5 148743697 148743697 1 + C T UCEC 148743717 + 148743697 148743737 41 CGCCTCTGGTGGCACTATGGCATCAGCTTCCTGAGGCTGCA TGCCTCTGGTGGCACTATGGCATCAGCTTCCTGAGGCTGCA < 41bp 1 0.521998364431788 1 0.143512070178986 experiment 0.956003271136424 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148743717 chr5:148743697 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_39926 0 0 0 0 2 Ribosome 1 0.500231641682799 1 0.999536716634402 hm5C_site_39214 DeepMRMD:1;iRNA_m5C:0.999536716634402 39215 chr17 14095347 14095347 1 + C T UCEC 14095330 + 14095310 14095350 41 TTGCTAGCTGTGTCCTTTGCCACTTGTTGTGCTGTTCCGGG TTGCTAGCTGTGTCCTTTGCCACTTGTTGTGCTGTTCTGGG < 41bp 1 0.319817849283682 1 0.831805825233459 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control COX10 ENSG00000006695 CDS Human protein_coding chr17:14095330 chr17:14095347 nonsynonymous SNV 0.544 2 38 hm5C_associated_SNPs_39928 0 0 1 0 1 Cytosol 1 0.500152270150014 0.336388349533082 0.999695459699972 hm5C_site_39215 DeepMRMD:0.336388349533082;iRNA_m5C:0.999695459699972 39216 chr1 116206829 116206829 1 + C T UCEC 116206847 + 116206827 116206867 41 CACGCTGCAGGTGGTCCGCTCCACCGATGGCGAGTCCCGCT CATGCTGCAGGTGGTCCGCTCCACCGATGGCGAGTCCCGCT < 41bp 1 0.226337092335943 1 0.079109400510788 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VANGL1 ENSG00000173218 CDS Human protein_coding chr1:116206847 chr1:116206829 nonsynonymous SNV 0.957 2 3 hm5C_associated_SNPs_39929 0 0 1 0 1 Ribosome 1 0.500231644027159 1 0.999536711945681 hm5C_site_39216 DeepMRMD:1;iRNA_m5C:0.999536711945681 39217 chr7 100610312 100610312 1 + G A UCEC 100610328 + 100610308 100610348 41 CAGTGTGAGCCCTGCGGGGCCCCTTCACCACCCCCTCCGCC CAGTATGAGCCCTGCGGGGCCCCTTCACCACCCCCTCCGCC < 41bp 1 0.0658320671697633 1 0.0794663429260254 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MUC3A ENSG00000169894 CDS Human protein_coding chr7:100610328 chr7:100610312 synonymous SNV . 0 5 hm5C_associated_SNPs_39931 0 0 0 0 1 exosome 1 0.500231643908749 1 0.999536712182502 hm5C_site_39217 DeepMRMD:1;iRNA_m5C:0.999536712182502 39218 chr19 36212464 36212464 1 + C T UCEC 36212461 + 36212441 36212481 41 CACAGACACAGGCTCAGCTACTGCAGCCCCTGCAGGCCTTG CACAGACACAGGCTCAGCTACTGTAGCCCCTGCAGGCCTTG < 41bp 1 0.258948197482849 1 0.118854194879532 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36212461 chr19:36212464 stopgain 0.996 0 24 hm5C_associated_SNPs_39932 0 0 1 0 0 chromatin 1 0.500231666707794 1 0.999536666584412 hm5C_site_39218 DeepMRMD:1;iRNA_m5C:0.999536666584412 39219 chr2 234360619 234360619 1 + C T UCEC 234360615 + 234360595 234360635 41 GTATCTCCTTTACAGATGTCCGGGCTGGAATGTCTGGTTCC GTATCTCCTTTACAGATGTCCGGGTTGGAATGTCTGGTTCC < 41bp 1 0.443823871533813 1 0.67577201128006 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKD ENSG00000077044 CDS Human protein_coding chr2:234360615 chr2:234360619 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_39933 0 0 0 0 2 Nucleus 1 0.500231643921107 0.64845597743988 0.999536712157786 hm5C_site_39219 DeepMRMD:0.64845597743988;iRNA_m5C:0.999536712157786 39220 chr2 113322018 113322018 1 + T A UCEC 113321998 + 113321978 113322018 41 TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGT TACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGA < 41bp 1 0.161344731078832 1 0.414184749126434 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321998 chr2:113322018 nonsynonymous SNV 0.997 2 41 hm5C_associated_SNPs_39934 0 0 1 0 2 Nucleus 1 0.500231612037316 1 0.999536775925369 hm5C_site_39220 DeepMRMD:1;iRNA_m5C:0.999536775925369 39221 chr2 113322018 113322018 1 + T A UCEC 113321999 + 113321979 113322019 41 ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGTT ACAGTGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGAT < 41bp 1 0.642519109240154 1 0.2641341984272 experiment 0.714961781519692 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113321999 chr2:113322018 nonsynonymous SNV 0.997 2 40 hm5C_associated_SNPs_39935 0 0 1 0 2 Nucleus 1 0.500231644414634 1 0.999536711170732 hm5C_site_39221 DeepMRMD:1;iRNA_m5C:0.999536711170732 39222 chr19 19656471 19656471 1 + C T UCEC 19656481 + 19656461 19656501 41 CACCGGTGCCCGCGGAGGACCCAGCTGCCTTCTCCATGCTG CACCGGTGCCTGCGGAGGACCCAGCTGCCTTCTCCATGCTG < 41bp 1 0.164809376737537 1 0.208660781383514 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19656481 chr19:19656471 synonymous SNV . 0 11 hm5C_associated_SNPs_39936 0 0 0 0 0 exosome 1 0.500231643926448 1 0.999536712147103 hm5C_site_39222 DeepMRMD:1;iRNA_m5C:0.999536712147103 39223 chr12 49666983 49666983 1 + C T UCEC 49666979 + 49666959 49666999 41 GGAGGTTGGAGCAGATAGTGCTGACGGAGAGGATGAGGGTG GGAGGTTGGAGCAGATAGTGCTGATGGAGAGGATGAGGGTG < 41bp 1 0.57818926261457 1 0.120628327131271 experiment 0.843621474770859 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TUBA1C ENSG00000167553 CDS Human protein_coding chr12:49666979 chr12:49666983 synonymous SNV . 0 25 hm5C_associated_SNPs_39937 0 0 1 0 0 Cytosol 1 0.500231599056823 1 0.999536801886353 hm5C_site_39223 DeepMRMD:1;iRNA_m5C:0.999536801886353 39224 chr4 79399105 79399105 1 + C T UCEC 79399112 + 79399092 79399132 41 GAATTCACCCAGGCGAAGGTCATTATCAACGATACCGAGGA GAATTCACCCAGGTGAAGGTCATTATCAACGATACCGAGGA < 41bp 1 0.0759016809841064 1 0.0546112060546875 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79399112 chr4:79399105 nonsynonymous SNV 0.041 3 14 hm5C_associated_SNPs_39938 0 0 0 0 0 Nucleus 1 0.500231663517236 1 0.999536672965529 hm5C_site_39224 DeepMRMD:1;iRNA_m5C:0.999536672965529 39225 chr6 36442598 36442598 1 + A G UCEC 36442596 + 36442576 36442616 41 TGACTATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACA TGACTATGCCTCTCAGCCAGCAGATCTTCAGTTCCCTCACA < 41bp 1 0.262770669419617 1 0.688372850418091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KCTD20 ENSG00000112078 CDS Human protein_coding chr6:36442596 chr6:36442598 nonsynonymous SNV 0.988 0 23 hm5C_associated_SNPs_39939 0 0 1 0 1 Cytosol 1 0.500231643922129 0.623254299163818 0.999536712155741 hm5C_site_39225 DeepMRMD:0.623254299163818;iRNA_m5C:0.999536712155741 39226 chr6 117869477 117869477 1 + G A UCEC 117869492 + 117869472 117869512 41 CCCTCGCCACCGAAAGCGGGCACCCTGACTCTCAGAAGCCC CCCTCACCACCGAAAGCGGGCACCCTGACTCTCAGAAGCCC < 41bp 1 0.367600205722752 1 0.0391936600208282 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117869492 chr6:117869477 nonsynonymous SNV 0.001 1 6 hm5C_associated_SNPs_39940 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_39226 DeepMRMD:1;iRNA_m5C:0.999536712157815 39227 chr10 17271866 17271866 1 + C T UCEC 17271865 + 17271845 17271885 41 GGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATGCG GGCAAGTCGCGCCTGGGGGACTTCTACGAGGAGGAGATGCG < 41bp 1 0.152451756228395 1 0.182117193937302 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17271865 chr10:17271866 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_39942 0 0 1 0 0 Ribosome 1 0.500231479104389 1 0.999537041791222 hm5C_site_39227 DeepMRMD:1;iRNA_m5C:0.999537041791222 39228 chr10 135209683 135209683 1 + G A UCEC 135209670 + 135209650 135209690 41 TACCTTAATTTTGCCACATCCCACTTTCAGGCCGCAACCCT TACCTTAATTTTGCCACATCCCACTTTCAGGCCACAACCCT < 41bp 1 0.0760437695671427 1 0.177619963884354 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTG1 ENSG00000148824;ENSG00000254536 CDS Human other chr10:135209670 chr10:135209683 nonsynonymous SNV 0.996 0 34 hm5C_associated_SNPs_39943 0 0 1 0 1 Cytosol 1 0.500231633613816 1 0.999536732772368 hm5C_site_39228 DeepMRMD:1;iRNA_m5C:0.999536732772368 39229 chr1 64095669 64095669 1 + G T UCEC 64095685 + 64095665 64095705 41 TGAAGAATATGCAGTTTGCCCTGACCTGAAAGTAGACCTTG TGAATAATATGCAGTTTGCCCTGACCTGAAAGTAGACCTTG < 41bp 1 0.209185813589553 1 0.0311912894248962 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PGM1 ENSG00000079739 CDS Human protein_coding chr1:64095685 chr1:64095669 stopgain 1.000 1 5 hm5C_associated_SNPs_39944 0 0 1 0 1 Ribosome 1 0.500231643911932 1 0.999536712176136 hm5C_site_39229 DeepMRMD:1;iRNA_m5C:0.999536712176136 39230 chr1 109441605 109441605 1 + G A UCEC 109441598 + 109441578 109441618 41 ATTTCTTGGTGAATTTGAAACTGCCTCGGAATACTACAAGT ATTTCTTGGTGAATTTGAAACTGCCTCAGAATACTACAAGT < 41bp 1 0.283529249804509 1 0.344171106815338 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109441598 chr1:109441605 synonymous SNV . 0 28 hm5C_associated_SNPs_39945 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644243541 1 0.999536711512917 hm5C_site_39230 DeepMRMD:1;iRNA_m5C:0.999536711512917 39231 chr12 124144432 124144432 1 + C T UCEC 124144415 + 124144395 124144435 41 AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATCGAA AGTTCATGTTGACTACAGGGCTGCTTGCTTCTGTCATTGAA < 41bp 1 0.347777003365242 1 0.071196973323822 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124144415 chr12:124144432 stopgain 1.000 1 38 hm5C_associated_SNPs_39946 0 0 1 0 2 Cytosol 1 0.50023148931331 1 0.999537021373379 hm5C_site_39231 DeepMRMD:1;iRNA_m5C:0.999537021373379 39232 chr3 31621436 31621436 1 + C T UCEC 31621422 + 31621402 31621442 41 AACTTTTAGCGGCCTTACATCTATATCTACTTTCCTGCTTA AACTTTTAGCGGCCTTACATCTATATCTACTTTCTTGCTTA < 41bp 1 0.666332895189843 1 0.80219304561615 experiment 0.667334209620314 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STT3B ENSG00000163527 CDS Human protein_coding chr3:31621422 chr3:31621436 synonymous SNV . 0 35 hm5C_associated_SNPs_39947 0 0 1 0 0 Nucleus 1 0.500231643921089 0.3956139087677 0.999536712157822 hm5C_site_39232 DeepMRMD:0.3956139087677;iRNA_m5C:0.999536712157822 39233 chr1 233514959 233514959 1 + G A UCEC 233514944 + 233514924 233514964 41 TGGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG TGGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGAACTGG < 41bp 1 0.274074170527611 1 0.0641431212425232 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233514944 chr1:233514959 nonsynonymous SNV 0.289 4 36 hm5C_associated_SNPs_39948 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_39233 DeepMRMD:1;iRNA_m5C:0.999536712157815 39234 chr6 31593337 31593337 1 + G A UCEC 31593332 + 31593312 31593352 41 GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC GTCATGATCCCCGGGGTGGGCTACAACCTTCAGGCCCACCC < 41bp 1 0.643198300717224 1 0.467625737190247 experiment 0.713603398565553 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593332 chr6:31593337 synonymous SNV . 0 26 hm5C_associated_SNPs_39949 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39234 DeepMRMD:1;iRNA_m5C:0.999536712157815 39235 chr6 31593337 31593337 1 + G A UCEC 31593346 + 31593326 31593366 41 GGTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTA GGTGGGCTACAACCTTCAGGCCCACCCCAGTTCCCTCCCTA < 41bp 1 0.200009788502788 1 0.0725703537464142 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593346 chr6:31593337 synonymous SNV . 0 12 hm5C_associated_SNPs_39950 0 0 1 0 1 Ribosome 1 0.500231643858588 1 0.999536712282824 hm5C_site_39235 DeepMRMD:1;iRNA_m5C:0.999536712282824 39236 chr6 31593337 31593337 1 + G A UCEC 31593347 + 31593327 31593367 41 GTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTAC GTGGGCTACAACCTTCAGGCCCACCCCAGTTCCCTCCCTAC < 41bp 1 0.146524113125069 1 0.0756620466709137 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593347 chr6:31593337 synonymous SNV . 0 11 hm5C_associated_SNPs_39951 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39236 DeepMRMD:1;iRNA_m5C:0.999536712157815 39237 chr6 31593337 31593337 1 + G A UCEC 31593348 + 31593328 31593368 41 TGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACC TGGGCTACAACCTTCAGGCCCACCCCAGTTCCCTCCCTACC < 41bp 1 0.239399962358275 1 0.0508480072021484 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593348 chr6:31593337 synonymous SNV . 0 10 hm5C_associated_SNPs_39952 0 0 1 0 1 Ribosome 1 0.500231643921088 1 0.999536712157824 hm5C_site_39237 DeepMRMD:1;iRNA_m5C:0.999536712157824 39238 chr6 31593337 31593337 1 + G A UCEC 31593350 + 31593330 31593370 41 GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC GGCTACAACCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC < 41bp 1 0.528054435344127 1 0.31787121295929 experiment 0.943891129311746 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593350 chr6:31593337 synonymous SNV . 0 8 hm5C_associated_SNPs_39953 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39238 DeepMRMD:1;iRNA_m5C:0.999536712157815 39239 chr6 31593337 31593337 1 + G A UCEC 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAACCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG < 41bp 1 0.381488151554292 1 0.105764150619507 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593337 synonymous SNV . 0 7 hm5C_associated_SNPs_39954 0 0 1 0 1 Ribosome 1 0.500231643920534 1 0.999536712158931 hm5C_site_39239 DeepMRMD:1;iRNA_m5C:0.999536712158931 39240 chr6 31593337 31593337 1 + G A UCEC 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAACCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG < 41bp 1 0.346217782405377 1 0.179176479578018 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593337 synonymous SNV . 0 6 hm5C_associated_SNPs_39955 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39240 DeepMRMD:1;iRNA_m5C:0.999536712157815 39241 chr6 31593337 31593337 1 + G A UCEC 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAACCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA < 41bp 1 0.299685181702659 1 0.444451123476028 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593337 synonymous SNV . 0 5 hm5C_associated_SNPs_39956 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_39241 DeepMRMD:1;iRNA_m5C:0.999536712157816 39242 chr12 110765494 110765494 1 + T G UCEC 110765502 + 110765482 110765522 41 AACTAGATGAATTTGGGGAACAGCTTTCCAAAGTCATCTCC AACTAGATGAATGTGGGGAACAGCTTTCCAAAGTCATCTCC < 41bp 1 0.388613708292636 1 0.304224729537964 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110765502 chr12:110765494 nonsynonymous SNV 1.000 5 13 hm5C_associated_SNPs_39957 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39242 DeepMRMD:1;iRNA_m5C:0.999536712157815 39243 chr1 213414693 213414693 1 + A C UCEC 213414710 + 213414690 213414730 41 TAAAATCAGAACCTTTGAAACCATTCTTTACTCTTCCAGAT TAACATCAGAACCTTTGAAACCATTCTTTACTCTTCCAGAT < 41bp 1 0.0551211066845079 1 0.0436346232891083 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213414710 chr1:213414693 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_39958 0 0 0 0 0 Nucleus 1 0.500231643628093 1 0.999536712743814 hm5C_site_39243 DeepMRMD:1;iRNA_m5C:0.999536712743814 39244 chr19 41111046 41111046 1 + G T UCEC 41111043 + 41111023 41111063 41 GTTCTGCCAGTTGCACTCCTCGGGCGCCCGGCCCCCGGCCC GTTCTGCCAGTTGCACTCCTCGGTCGCCCGGCCCCCGGCCC < 41bp 1 0.526355766854163 1 0.842467546463013 experiment 0.947288466291673 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41111043 chr19:41111046 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_39959 0 0 1 0 1 Cytosol 1 0.500231644004967 0.315064907073974 0.999536711990066 hm5C_site_39244 DeepMRMD:0.315064907073974;iRNA_m5C:0.999536711990066 39245 chr15 36984339 36984339 1 + G A UCEC 36984350 + 36984330 36984370 41 ATTGTGAACGACTGCTGTTACGGACCACTAGTGGACTGCAT ATTGTGAACAACTGCTGTTACGGACCACTAGTGGACTGCAT < 41bp 1 0.441392725445278 1 0.86359030008316 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36984350 chr15:36984339 nonsynonymous SNV 0.963 4 10 hm5C_associated_SNPs_39960 0 0 0 0 2 Cytosol 1 0.500231643853723 0.27281939983368 0.999536712292554 hm5C_site_39245 DeepMRMD:0.27281939983368;iRNA_m5C:0.999536712292554 39246 chr2 55056509 55056509 1 + G T UCEC 55056514 + 55056494 55056534 41 ATGTATGCTTGTGAAGAAGGCTTTGCCACTGGTGGGCGAGA ATGTATGCTTGTGAATAAGGCTTTGCCACTGGTGGGCGAGA < 41bp 1 0.0345260221536628 1 0.0865615606307983 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55056514 chr2:55056509 stopgain 1.000 0 16 hm5C_associated_SNPs_39961 0 0 1 0 1 cytosol 1 0.500231643926653 1 0.999536712146695 hm5C_site_39246 DeepMRMD:1;iRNA_m5C:0.999536712146695 39247 chr10 122625211 122625211 1 + C T UCEC 122625218 + 122625198 122625238 41 AACTTTACGTGTTCGAAGATCTTATAATAACATTTTTACCA AACTTTACGTGTTTGAAGATCTTATAATAACATTTTTACCA < 41bp 1 0.0642153631101732 1 0.086569756269455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625218 chr10:122625211 stopgain 0.999 1 14 hm5C_associated_SNPs_39962 0 0 1 0 2 Nucleus 1 0.500231643850915 1 0.999536712298169 hm5C_site_39247 DeepMRMD:1;iRNA_m5C:0.999536712298169 39248 chr10 122625211 122625211 1 + C T UCEC 122625228 + 122625208 122625248 41 GTTCGAAGATCTTATAATAACATTTTTACCACTTCAAATGA GTTTGAAGATCTTATAATAACATTTTTACCACTTCAAATGA < 41bp 1 0.108403943708614 1 0.0874392986297607 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122625228 chr10:122625211 stopgain 0.999 1 4 hm5C_associated_SNPs_39963 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39248 DeepMRMD:1;iRNA_m5C:0.999536712157815 39249 chr17 7160312 7160312 1 + G A UCEC 7160303 + 7160283 7160323 41 ACCCTGGGCGGTACCATGGGCCAGGCCTCGGCCCACATCCT ACCCTGGGCGGTACCATGGGCCAGGCCTCAGCCCACATCCT < 41bp 1 0.464515427796405 1 0.199491888284683 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160303 chr17:7160312 synonymous SNV . 0 30 hm5C_associated_SNPs_39964 0 0 1 0 1 Cytosol 1 0.500231643921082 1 0.999536712157836 hm5C_site_39249 DeepMRMD:1;iRNA_m5C:0.999536712157836 39250 chr17 7160312 7160312 1 + G A UCEC 7160314 + 7160294 7160334 41 TACCATGGGCCAGGCCTCGGCCCACATCCTGTGTCGGAGGC TACCATGGGCCAGGCCTCAGCCCACATCCTGTGTCGGAGGC < 41bp 1 0.307364594475444 1 0.568678677082062 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160314 chr17:7160312 synonymous SNV . 0 19 hm5C_associated_SNPs_39966 0 0 1 0 1 Cytosol 1 0.500231643921092 0.862642645835876 0.999536712157815 hm5C_site_39250 DeepMRMD:0.862642645835876;iRNA_m5C:0.999536712157815 39251 chr17 7160312 7160312 1 + G A UCEC 7160315 + 7160295 7160335 41 ACCATGGGCCAGGCCTCGGCCCACATCCTGTGTCGGAGGCC ACCATGGGCCAGGCCTCAGCCCACATCCTGTGTCGGAGGCC < 41bp 1 0.631013727314452 1 0.666959524154663 experiment 0.737972545371096 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160315 chr17:7160312 synonymous SNV . 0 18 hm5C_associated_SNPs_39967 0 0 1 0 1 Cytosol 1 0.500231627212528 0.666080951690674 0.999536745574944 hm5C_site_39251 DeepMRMD:0.666080951690674;iRNA_m5C:0.999536745574944 39252 chr17 7160312 7160312 1 + G A UCEC 7160316 + 7160296 7160336 41 CCATGGGCCAGGCCTCGGCCCACATCCTGTGTCGGAGGCCC CCATGGGCCAGGCCTCAGCCCACATCCTGTGTCGGAGGCCC < 41bp 1 0.426346359520165 1 0.242062509059906 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160316 chr17:7160312 synonymous SNV . 0 17 hm5C_associated_SNPs_39968 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39252 DeepMRMD:1;iRNA_m5C:0.999536712157815 39253 chr7 157000233 157000233 1 + C T UCEC 157000240 + 157000220 157000260 41 ATAACGAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT ATAACGAATTCTTTGGTGATCCCATAGAAGGTAAGGATTTT < 41bp 1 0.0413697956419609 1 0.112869411706924 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157000240 chr7:157000233 synonymous SNV . 0 14 hm5C_associated_SNPs_39969 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39253 DeepMRMD:1;iRNA_m5C:0.999536712157815 39254 chr12 22214321 22214321 1 + G T UCEC 22214315 + 22214295 22214335 41 ACATTTATGTATCAGGAGACCAAAAAGAAATAATATCTTAT ACATTTATGTATCAGGAGACCAAAAATAAATAATATCTTAT < 41bp 1 0.419575696565756 1 0.421809434890747 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22214315 chr12:22214321 stopgain 1.000 1 27 hm5C_associated_SNPs_39970 0 0 1 0 1 Ribosome 1 0.500231644188578 1 0.999536711622845 hm5C_site_39254 DeepMRMD:1;iRNA_m5C:0.999536711622845 39255 chrX 107842013 107842013 1 + G A UCEC 107842027 + 107842007 107842047 41 CCTATGGGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGG CCTATGAGTCCCCCTGGTTTCGGCCCTCCAGGCCCAGTAGG < 41bp 1 0.488512204820758 1 0.532953500747681 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107842027 chrX:107842013 nonsynonymous SNV 0.775 5 7 hm5C_associated_SNPs_39971 0 0 1 0 1 Ribosome 1 0.500231643921092 0.934092998504638 0.999536712157815 hm5C_site_39255 DeepMRMD:0.934092998504638;iRNA_m5C:0.999536712157815 39256 chr2 118582183 118582183 1 + C T UCEC 118582181 + 118582161 118582201 41 GCTCTTTTCTGCCACCCAAACTCGAAAAGTTGAAGACCTGG GCTCTTTTCTGCCACCCAAACTTGAAAAGTTGAAGACCTGG < 41bp 1 0.668230153974341 1 0.248898893594742 experiment 0.663539692051319 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582181 chr2:118582183 stopgain 1.000 1 23 hm5C_associated_SNPs_39972 0 0 1 0 1 Nucleus 1 0.500232108928533 1 0.999535782142933 hm5C_site_39256 DeepMRMD:1;iRNA_m5C:0.999535782142933 39257 chr7 2406205 2406205 1 + G A UCEC 2406225 + 2406205 2406245 41 GCTTAGCATCTATGAAACTCCTGTAAGTGGCCTCAGTGATG ACTTAGCATCTATGAAACTCCTGTAAGTGGCCTCAGTGATG < 41bp 1 0.479297751873811 1 0.0820305943489075 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2406225 chr7:2406205 synonymous SNV . 0 1 hm5C_associated_SNPs_39973 0 0 1 0 2 Ribosome 1 0.500217789543841 1 0.999564420912318 hm5C_site_39257 DeepMRMD:1;iRNA_m5C:0.999564420912318 39258 chr5 140573643 140573643 1 + C A UCEC 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATAAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC < 41bp 1 0.227329576255128 1 0.106210976839066 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573643 synonymous SNV . 0 6 hm5C_associated_SNPs_39974 0 0 0 0 0 exosome 1 0.50023164391018 1 0.999536712179641 hm5C_site_39258 DeepMRMD:1;iRNA_m5C:0.999536712179641 39259 chr11 73075569 73075569 1 + T C UCEC 73075552 + 73075532 73075572 41 ACCTTGGGCACCCAGGGGAGCCCCATCACCAAGATGGTATC ACCTTGGGCACCCAGGGGAGCCCCATCACCAAGATGGCATC < 41bp 1 0.188409426044071 1 0.0581503510475159 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73075552 chr11:73075569 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_39975 0 0 1 0 2 Cytosol 1 0.500231644453664 1 0.999536711092673 hm5C_site_39259 DeepMRMD:1;iRNA_m5C:0.999536711092673 39260 chr1 249211780 249211780 1 + A C UCEC 249211767 + 249211747 249211787 41 AGGAGCTTGGATCTAGGAGGCAGTATGGTAATAAAATTTGT AGGAGCTTGGATCTAGGAGGCAGTATGGTAATACAATTTGT < 41bp 1 0.569728115758832 1 0.375444114208221 experiment 0.860543768482336 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249211767 chr1:249211780 nonsynonymous SNV 0.913 1 34 hm5C_associated_SNPs_39976 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39260 DeepMRMD:1;iRNA_m5C:0.999536712157815 39261 chr5 54635872 54635872 1 + C T UCEC 54635889 + 54635869 54635909 41 CAGCGTGTAATATTTACCAGCCCAATTAAGGCTCTGAGTAA CAGTGTGTAATATTTACCAGCCCAATTAAGGCTCTGAGTAA < 41bp 1 0.337351330526221 1 0.296898245811462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54635889 chr5:54635872 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_39977 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39261 DeepMRMD:1;iRNA_m5C:0.999536712157815 39262 chr15 42984681 42984681 1 + G A UCEC 42984694 + 42984674 42984714 41 CCAGGACGAACACATTCGAACAGGGCACACAGACCCTCGGC CCAGGACAAACACATTCGAACAGGGCACACAGACCCTCGGC < 41bp 1 0.516136517036149 1 0.932381749153137 experiment 0.967726965927702 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control STARD9 ENSG00000159433 CDS Human protein_coding chr15:42984694 chr15:42984681 synonymous SNV . 0 8 hm5C_associated_SNPs_39978 0 0 1 0 0 Cytosol 1 0.500231643799281 0.135236501693726 0.999536712401438 hm5C_site_39262 DeepMRMD:0.135236501693726;iRNA_m5C:0.999536712401438 39263 chr5 43173452 43173452 1 + G T UCEC 43173455 + 43173435 43173475 41 AATGTCCAAATTGTCATGAACGATTTGCTAGAAATAGCACT AATGTCCAAATTGTCATTAACGATTTGCTAGAAATAGCACT < 41bp 1 0.158295522847456 1 0.149490505456924 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43173455 chr5:43173452 stopgain 1.000 1 18 hm5C_associated_SNPs_39979 0 0 1 1 2 Cytosol 1 0.500231408045311 1 0.999537183909377 hm5C_site_39263 DeepMRMD:1;iRNA_m5C:0.999537183909377 39264 chr11 57574416 57574416 1 + G A UCEC 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACAATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC < 41bp 1 0.655008385226158 1 0.411131262779236 experiment 0.689983229547683 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574416 nonsynonymous SNV 0.994 3 5 hm5C_associated_SNPs_39980 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39264 DeepMRMD:1;iRNA_m5C:0.999536712157815 39265 chr1 70716103 70716103 1 + G T UCEC 70716113 + 70716093 70716133 41 GGATGAAAGAGAACGATCAACAAGCAAGAAGAAGAAGAGTA GGATGAAAGATAACGATCAACAAGCAAGAAGAAGAAGAGTA < 41bp 1 0.457920416194403 1 0.247153460979462 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70716113 chr1:70716103 stopgain 0.998 1 11 hm5C_associated_SNPs_39981 0 0 1 0 1 Nucleus 1 0.500231649805357 1 0.999536700389286 hm5C_site_39265 DeepMRMD:1;iRNA_m5C:0.999536700389286 39266 chr11 107968468 107968468 1 + G A UCEC 107968473 + 107968453 107968493 41 TTCTCAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA TTCTCAGTGAACCAGAAGTTCAGTTTAATGTAAGCTCGTTA < 41bp 1 0.240801651518644 1 0.0982439517974854 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968473 chr11:107968468 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_39982 0 0 1 0 1 Ribosome 1 0.500231643920539 1 0.999536712158921 hm5C_site_39266 DeepMRMD:1;iRNA_m5C:0.999536712158921 39267 chr9 124534954 124534954 1 + C T UCEC 124534965 + 124534945 124534985 41 TCACAAGGTCCTCCGGGGTCCAGCCCTCACCTGCCCGCAGC TCACAAGGTTCTCCGGGGTCCAGCCCTCACCTGCCCGCAGC < 41bp 1 0.247049882811912 1 0.188832968473434 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124534965 chr9:124534954 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_39983 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39267 DeepMRMD:1;iRNA_m5C:0.999536712157815 39268 chr1 10689618 10689618 1 + G A UCEC 10689614 + 10689594 10689634 41 GTTCCCTCCATCCCCATCAGCCCCGAAGATCCCCTCCTGGC GTTCCCTCCATCCCCATCAGCCCCAAAGATCCCCTCCTGGC < 41bp 1 0.437459326117455 1 0.0320783257484436 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PEX14 ENSG00000142655 CDS Human protein_coding chr1:10689614 chr1:10689618 synonymous SNV . 0 25 hm5C_associated_SNPs_39984 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39268 DeepMRMD:1;iRNA_m5C:0.999536712157815 39269 chr14 21967267 21967267 1 + A G UCEC 21967278 - 21967258 21967298 41 TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAACCA TAGTTTTTATTTCCTAGGTTCGTTCCACCAGCCATAAACCA < 41bp 1 0.0184371604590145 1 0.0443174839019775 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control METTL3 ENSG00000165819 CDS Human protein_coding chr14:21967278 chr14:21967267 synonymous SNV . 0 32 hm5C_associated_SNPs_39985 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39269 DeepMRMD:1;iRNA_m5C:0.999536712157815 39270 chr12 79689903 79689903 1 + A G UCEC 79689904 + 79689884 79689924 41 CGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAG CGCCTTGGACATGGGGGGCGCATCTGATCCTTACGTGAAAG < 41bp 1 0.17434199911574 1 0.214029848575592 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SYT1 ENSG00000067715 CDS Human protein_coding chr12:79689904 chr12:79689903 nonsynonymous SNV 0.976 2 20 hm5C_associated_SNPs_39986 0 0 0 0 1 Cytosol 1 0.500231643923546 1 0.999536712152908 hm5C_site_39270 DeepMRMD:1;iRNA_m5C:0.999536712152908 39271 chr19 36128138 36128138 1 + C T UCEC 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT GCCTTCAGCCGCTTCCTATCCTTCCTTAAGGCCAAGGTGAT < 41bp 1 0.212971706334154 1 0.464177012443542 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128138 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_39987 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39271 DeepMRMD:1;iRNA_m5C:0.999536712157815 39272 chr1 151633285 151633285 1 + C T UCEC 151633305 + 151633285 151633325 41 CGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATC TGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATC < 41bp 1 0.336131794818876 1 0.223774641752243 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX27 ENSG00000143376 CDS Human protein_coding chr1:151633305 chr1:151633285 stopgain 1.000 1 1 hm5C_associated_SNPs_39988 0 0 1 0 1 Ribosome 1 0.500231691531682 1 0.999536616936637 hm5C_site_39272 DeepMRMD:1;iRNA_m5C:0.999536616936637 39273 chr7 142459721 142459721 1 + C T UCEC 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATATGA < 41bp 1 0.303572028089793 1 0.0890495479106903 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459721 synonymous SNV . 0 39 hm5C_associated_SNPs_39989 0 0 0 0 1 Cytosol 1 0.500231511922718 1 0.999536976154565 hm5C_site_39273 DeepMRMD:1;iRNA_m5C:0.999536976154565 39274 chr7 142459721 142459721 1 + C T UCEC 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAGCCAAGATCATCCGCCACCCCCAATATGACAG < 41bp 1 0.252329250525133 1 0.256583750247955 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459721 synonymous SNV . 0 36 hm5C_associated_SNPs_39990 0 0 0 0 1 Cytosol 1 0.500231643920876 1 0.999536712158248 hm5C_site_39274 DeepMRMD:1;iRNA_m5C:0.999536712158248 39275 chr7 142459721 142459721 1 + C T UCEC 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAGCCAAGATCATCCGCCACCCCCAATATGACAGGAA < 41bp 1 0.109116467828648 1 0.145428329706192 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459721 synonymous SNV . 0 33 hm5C_associated_SNPs_39992 0 0 0 0 1 Cytosol 1 0.500231634193507 1 0.999536731612985 hm5C_site_39275 DeepMRMD:1;iRNA_m5C:0.999536731612985 39276 chr7 142459721 142459721 1 + C T UCEC 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAGCCAAGATCATCCGCCACCCCCAATATGACAGGAAG < 41bp 1 0.201714357252847 1 0.173593252897263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459721 synonymous SNV . 0 32 hm5C_associated_SNPs_39993 0 0 0 0 1 Cytosol 1 0.500231644676811 1 0.999536710646378 hm5C_site_39276 DeepMRMD:1;iRNA_m5C:0.999536710646378 39277 chr7 142459721 142459721 1 + C T UCEC 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAGCCAAGATCATCCGCCACCCCCAATATGACAGGAAGAC < 41bp 1 0.126760287578989 1 0.0870113968849182 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459721 synonymous SNV . 0 30 hm5C_associated_SNPs_39994 0 0 0 0 1 Cytosol 1 0.500231661951745 1 0.999536676096511 hm5C_site_39277 DeepMRMD:1;iRNA_m5C:0.999536676096511 39278 chr7 142459721 142459721 1 + C T UCEC 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAGCCAAGATCATCCGCCACCCCCAATATGACAGGAAGACT < 41bp 1 0.473388662633787 1 0.450977772474289 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459721 synonymous SNV . 0 29 hm5C_associated_SNPs_39995 0 0 0 0 1 Cytosol 1 0.500231643993315 1 0.999536712013371 hm5C_site_39278 DeepMRMD:1;iRNA_m5C:0.999536712013371 39279 chr7 142459721 142459721 1 + C T UCEC 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AGCCAAGATCATCCGCCACCCCCAATATGACAGGAAGACTC < 41bp 1 0.461663972924709 1 0.189132750034332 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459721 synonymous SNV . 0 28 hm5C_associated_SNPs_39996 0 0 0 0 1 Cytosol 1 0.500231643570039 1 0.999536712859921 hm5C_site_39279 DeepMRMD:1;iRNA_m5C:0.999536712859921 39280 chr7 142459721 142459721 1 + C T UCEC 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT GCCAAGATCATCCGCCACCCCCAATATGACAGGAAGACTCT < 41bp 1 0.289313012919925 1 0.166017591953278 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459721 synonymous SNV . 0 27 hm5C_associated_SNPs_39997 0 0 0 0 1 Cytosol 1 0.500231643961741 1 0.999536712076518 hm5C_site_39280 DeepMRMD:1;iRNA_m5C:0.999536712076518 39281 chr7 142459721 142459721 1 + C T UCEC 142459716 + 142459696 142459736 41 CCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCTG CCAAGATCATCCGCCACCCCCAATATGACAGGAAGACTCTG < 41bp 1 0.513347958432811 1 0.267535895109177 experiment 0.973304083134378 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459716 chr7:142459721 synonymous SNV . 0 26 hm5C_associated_SNPs_39998 0 0 0 0 1 Cytosol 1 0.500231644435778 1 0.999536711128443 hm5C_site_39281 DeepMRMD:1;iRNA_m5C:0.999536711128443 39282 chr7 142459721 142459721 1 + C T UCEC 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCCCCAATATGACAGGAAGACTCTGAACAATGACATCATGT < 41bp 1 0.528745086855572 1 0.208154439926147 experiment 0.942509826288856 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459721 synonymous SNV . 0 10 hm5C_associated_SNPs_39999 0 0 0 0 1 Cytosol 1 0.500231644315317 1 0.999536711369365 hm5C_site_39282 DeepMRMD:1;iRNA_m5C:0.999536711369365 39283 chr7 142459721 142459721 1 + C T UCEC 142459739 + 142459719 142459759 41 TACGACAGGAAGACTCTGAACAATGACATCATGTTAATCAA TATGACAGGAAGACTCTGAACAATGACATCATGTTAATCAA < 41bp 1 0.525744940258132 1 0.188565582036972 experiment 0.948510119483737 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459739 chr7:142459721 synonymous SNV . 0 3 hm5C_associated_SNPs_40000 0 0 0 0 1 Cytosol 1 0.500231670508204 1 0.999536658983591 hm5C_site_39283 DeepMRMD:1;iRNA_m5C:0.999536658983591 39284 chr9 101765842 101765842 1 + G A UCEC 101765832 + 101765812 101765852 41 CACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAG CACCGGGGGACCAACCCTCTCTATGTCCACAGAGAACCCAG < 41bp 1 0.345144468752123 1 0.157158762216568 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765832 chr9:101765842 synonymous SNV . 0 31 hm5C_associated_SNPs_40001 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_39284 DeepMRMD:1;iRNA_m5C:0.999536712157815 39285 chrX 105891582 105891582 1 + G T UCEC 105891593 + 105891573 105891613 41 ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCA ACAAACAAATGGAATTAAACCGGGCATGCCAAGCATCTTCA < 41bp 1 0.678556229652789 1 0.72043913602829 experiment 0.642887540694422 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891593 chrX:105891582 nonsynonymous SNV 0.167 0 10 hm5C_associated_SNPs_40002 0 0 0 0 1 nucleus 1 0.500231643921095 0.55912172794342 0.99953671215781 hm5C_site_39285 DeepMRMD:0.55912172794342;iRNA_m5C:0.99953671215781 39286 chr2 174128576 174128576 1 + C T UCEC 174128572 + 174128552 174128592 41 AAGCAGTCCAACTTGCCATTCAGACATTATTCACCAATTCA AAGCAGTCCAACTTGCCATTCAGATATTATTCACCAATTCA < 41bp 1 0.118510184492701 1 0.253975450992584 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAP3K20 ENSG00000091436 CDS Human protein_coding chr2:174128572 chr2:174128576 nonsynonymous SNV 0.716 2 25 hm5C_associated_SNPs_40003 0 0 0 0 1 unknown 1 0.500222319396351 1 0.999555361207298 hm5C_site_39286 DeepMRMD:1;iRNA_m5C:0.999555361207298 39287 chr10 115661458 115661458 1 + T C UCEC 115661457 + 115661437 115661477 41 AGGAACCTGCCTTAGGTTTGCTGGAAGTGGAAATGAAGAGA AGGAACCTGCCTTAGGTTTGCCGGAAGTGGAAATGAAGAGA < 41bp 1 0.634848362491766 1 0.56138813495636 experiment 0.730303275016468 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661457 chr10:115661458 synonymous SNV . 0 22 hm5C_associated_SNPs_40004 0 0 1 1 1 Nucleus 1 0.500231643836732 0.87722373008728 0.999536712326536 hm5C_site_39287 DeepMRMD:0.87722373008728;iRNA_m5C:0.999536712326536 39288 chr22 38321725 38321725 1 + G T UCEC 38321720 + 38321700 38321740 41 TCACGCTGGTGCAGGCAGAACCAAAGAAGAAGCCAGCCCCA TCACGCTGGTGCAGGCAGAACCAAATAAGAAGCCAGCCCCA < 41bp 1 0.47164526619133 1 0.495800524950027 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38321720 chr22:38321725 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_40006 0 0 0 0 1 Ribosome 1 0.500231641113399 1 0.999536717773201 hm5C_site_39288 DeepMRMD:1;iRNA_m5C:0.999536717773201 39289 chr22 32445982 32445982 1 + G A UCEC 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCAAAGTATGGT < 41bp 1 0.256020300883613 1 0.353711128234863 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445982 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_40007 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39289 DeepMRMD:1;iRNA_m5C:0.999536712157815 39290 chr15 100215641 100215641 1 + T C UCEC 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAGACCTCACAGTGCCAAACGGAGCTGGAAGCAGTC < 41bp 1 0.228056247851763 1 0.394102782011032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215641 synonymous SNV . 0 25 hm5C_associated_SNPs_40008 0 0 1 0 2 Endoplasmic reticulum 1 0.500227716074053 1 0.999544567851893 hm5C_site_39290 DeepMRMD:1;iRNA_m5C:0.999544567851893 39291 chr6 32944207 32944207 1 + T C UCEC 32944227 + 32944207 32944247 41 TTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAGGTATGA CTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAGGTATGA < 41bp 1 0.299433056218877 1 0.153890311717987 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32944227 chr6:32944207 nonsynonymous SNV 0.985 1 1 hm5C_associated_SNPs_40009 0 0 1 0 1 Cytosol 1 0.500231643916129 1 0.999536712167741 hm5C_site_39291 DeepMRMD:1;iRNA_m5C:0.999536712167741 39292 chr11 107966313 107966313 1 + C T UCEC 107966308 + 107966288 107966328 41 ATTTGGAGGTAACCACGTTTCAGCTCGCTGTATTGTTTGCA ATTTGGAGGTAACCACGTTTCAGCTTGCTGTATTGTTTGCA < 41bp 1 0.572668751561296 1 0.691697359085083 experiment 0.854662496877407 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107966308 chr11:107966313 synonymous SNV . 0 26 hm5C_associated_SNPs_40010 0 0 1 0 1 Ribosome 1 0.500231643837917 0.616605281829834 0.999536712324165 hm5C_site_39292 DeepMRMD:0.616605281829834;iRNA_m5C:0.999536712324165 39293 chr7 101840398 101840398 1 + C T UCEC 101840378 + 101840358 101840398 41 TCGCCCGGCAGGTCAAAGAGCAGCTGATTAAGCACAATATC TCGCCCGGCAGGTCAAAGAGCAGCTGATTAAGCACAATATT < 41bp 1 0.122320387376358 1 0.0859610736370087 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101840378 chr7:101840398 synonymous SNV . 0 41 hm5C_associated_SNPs_40011 0 0 1 0 0 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39293 DeepMRMD:1;iRNA_m5C:0.999536712157815 39294 chr12 21205120 21205120 1 + T A UCEC 21205114 + 21205094 21205134 41 GATGAAAGTCAATGGGAACCCGTCTGTGGAAACAATGGAAT GATGAAAGTCAATGGGAACCCGTCTGAGGAAACAATGGAAT < 41bp 1 0.380799705426679 1 0.161033987998962 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLCO1B7 ENSG00000205754;ENSG00000257046 CDS Human other chr12:21205114 chr12:21205120 stopgain 0.704 1 27 hm5C_associated_SNPs_40012 0 0 0 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39294 DeepMRMD:1;iRNA_m5C:0.999536712157815 39295 chr17 33310496 33310496 1 + G A UCEC 33310485 + 33310465 33310505 41 AGAGCGGGCCCGGGCCACCACAAAAAAAATCGAGGACCTCA AGAGCGGGCCCGGGCCACCACAAAAAAAATCAAGGACCTCA < 41bp 1 0.689880932357017 1 0.404021143913269 experiment 0.620238135285966 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33310485 chr17:33310496 nonsynonymous SNV 0.989 4 32 hm5C_associated_SNPs_40013 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39295 DeepMRMD:1;iRNA_m5C:0.999536712157815 39296 chrX 9652146 9652146 1 + G T UCEC 9652130 + 9652110 9652150 41 GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGGGACG GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGTGACG < 41bp 1 0.0871668281727135 1 0.506738543510437 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9652130 chrX:9652146 nonsynonymous SNV 0.993 4 37 hm5C_associated_SNPs_40014 0 0 0 0 2 Cytosol 1 0.50023137855154 0.986522912979126 0.999537242896921 hm5C_site_39296 DeepMRMD:0.986522912979126;iRNA_m5C:0.999537242896921 39297 chr6 161470213 161470213 1 + C T UCEC 161470199 + 161470179 161470219 41 CAGATATTATTAATGAAATCCTTACTTTCAAAGTCGACTAT CAGATATTATTAATGAAATCCTTACTTTCAAAGTTGACTAT < 41bp 1 0.0627761989572843 1 0.0375246703624725 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161470199 chr6:161470213 synonymous SNV . 0 35 hm5C_associated_SNPs_40015 0 0 1 0 0 Cytosol 1 0.500231643921208 1 0.999536712157584 hm5C_site_39297 DeepMRMD:1;iRNA_m5C:0.999536712157584 39298 chr7 98591327 98591327 1 + G T UCEC 98591325 + 98591305 98591345 41 CCCTGGAAGGCATCGTCGATCAGATGGTCTGGTTCAGAGAA CCCTGGAAGGCATCGTCGATCATATGGTCTGGTTCAGAGAA < 41bp 1 0.10495017516553 1 0.113931477069855 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98591325 chr7:98591327 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_40016 0 0 1 0 1 Nucleus 1 0.500231643915305 1 0.999536712169391 hm5C_site_39298 DeepMRMD:1;iRNA_m5C:0.999536712169391 39299 chr7 70252238 70252238 1 + G T UCEC 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTCGGCCACAAGGATGGCCCCAGTGTGCATAACTTTAGCA < 41bp 1 0.141753503900069 1 0.0702724158763885 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252238 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_40017 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39299 DeepMRMD:1;iRNA_m5C:0.999536712157815 39300 chr19 4323369 4323369 1 + G A UCEC 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCCCACACCAAACAAGTGCTGCACACTTTCAAGACCAGG < 41bp 1 0.35781160725152 1 0.149095118045807 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323369 nonsynonymous SNV 0.988 1 7 hm5C_associated_SNPs_40018 0 0 1 0 2 cytosol 1 0.500231645744128 1 0.999536708511743 hm5C_site_39300 DeepMRMD:1;iRNA_m5C:0.999536708511743 39301 chr5 32093051 32093051 1 + G T UCEC 32093044 + 32093024 32093064 41 TTCTAGTCTCAGCGGGGGACCAGCAAAGATTACAGTCTGTT TTCTAGTCTCAGCGGGGGACCAGCAAATATTACAGTCTGTT < 41bp 1 0.127904649273238 1 0.548010587692261 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32093044 chr5:32093051 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_40019 0 0 0 0 2 chromatin 1 0.500231643920966 0.903978824615478 0.999536712158067 hm5C_site_39301 DeepMRMD:0.903978824615478;iRNA_m5C:0.999536712158067 39302 chr12 105543490 105543490 1 + G A UCEC 105543489 + 105543469 105543509 41 CCAGATTGATTAAAGATATTCGATTTTTCAGGGAAATTAAG CCAGATTGATTAAAGATATTCAATTTTTCAGGGAAATTAAG < 41bp 1 0.123908646380462 1 0.0995604395866394 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105543489 chr12:105543490 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_40020 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_39302 DeepMRMD:1;iRNA_m5C:0.999536712157816 39303 chr20 4679897 4679897 1 + C A UCEC 4679908 + 4679888 4679928 41 ATGCTGGTTCTCTTTGTGGCCACATGGAGTGACCTGGGCCT ATGCTGGTTATCTTTGTGGCCACATGGAGTGACCTGGGCCT < 41bp 1 0.571011221539479 1 0.581954121589661 experiment 0.857977556921041 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRNP ENSG00000171867 CDS Human protein_coding chr20:4679908 chr20:4679897 nonsynonymous SNV 0.778 2 10 hm5C_associated_SNPs_40021 0 0 1 0 1 Ribosome 1 0.500231644035333 0.836091756820678 0.999536711929334 hm5C_site_39303 DeepMRMD:0.836091756820678;iRNA_m5C:0.999536711929334 39304 chr2 179257222 179257222 1 + G T UCEC 179257242 + 179257222 179257262 41 GATCTCCTTCCACCAACAGACGCCCGGTTCCGGCCAGATCA TATCTCCTTCCACCAACAGACGCCCGGTTCCGGCCAGATCA < 41bp 1 0.241125640437144 1 0.127392739057541 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179257242 chr2:179257222 nonsynonymous SNV 0.997 3 1 hm5C_associated_SNPs_40022 0 0 0 0 2 Cytosol 1 0.500231643921085 1 0.99953671215783 hm5C_site_39304 DeepMRMD:1;iRNA_m5C:0.99953671215783 39305 chr9 103008912 103008912 1 + G C UCEC 103008902 + 103008882 103008922 41 TCAAGTTTTCTTACAGGAAACGGTTAAAGTGTTTTTAAAAC TCAAGTTTTCTTACAGGAAACGGTTAAAGTCTTTTTAAAAC < 41bp 1 0.0965579226250704 1 0.442181408405304 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INVS ENSG00000119509 CDS Human protein_coding chr9:103008902 chr9:103008912 synonymous SNV . 0 31 hm5C_associated_SNPs_40023 0 0 0 0 2 chromatin 1 0.500231643921089 1 0.999536712157822 hm5C_site_39305 DeepMRMD:1;iRNA_m5C:0.999536712157822 39306 chr5 134099668 134099668 1 + G T UCEC 134099687 + 134099667 134099707 41 AGAAGTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGA ATAAGTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGA < 41bp 1 0.514483960414667 1 0.222184270620346 experiment 0.971032079170667 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099687 chr5:134099668 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_40025 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39306 DeepMRMD:1;iRNA_m5C:0.999536712157815 39307 chr7 99780455 99780455 1 + A G UCEC 99780447 + 99780427 99780467 41 TTCAATGCTGTGAAAGCCGCCAAAAGTGACATGCAGGTAAA TTCAATGCTGTGAAAGCCGCCAAAAGTGGCATGCAGGTAAA < 41bp 1 0.497180350799512 1 0.545532941818237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG3 ENSG00000066923 CDS Human protein_coding chr7:99780447 chr7:99780455 nonsynonymous SNV 0.997 0 29 hm5C_associated_SNPs_40026 0 0 0 0 1 exosome 1 0.500231643886909 0.908934116363526 0.999536712226182 hm5C_site_39307 DeepMRMD:0.908934116363526;iRNA_m5C:0.999536712226182 39308 chrX 149924192 149924192 1 + C T UCEC 149924206 + 149924186 149924226 41 TATGGTCGTATATCAATAGCCAGCTAGACGAGTTTTCTAAT TATGGTTGTATATCAATAGCCAGCTAGACGAGTTTTCTAAT < 41bp 1 0.276752118684834 1 0.743498563766479 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149924206 chrX:149924192 nonsynonymous SNV 0.993 5 7 hm5C_associated_SNPs_40027 0 0 0 0 1 Ribosome 1 0.500231644219966 0.513002872467042 0.999536711560067 hm5C_site_39308 DeepMRMD:0.513002872467042;iRNA_m5C:0.999536711560067 39309 chr17 41568616 41568616 1 + C T UCEC 41568607 + 41568587 41568627 41 TCCTTTGCCAACCGGACAACCCTTCTGTTCGGGTACTGATA TCCTTTGCCAACCGGACAACCCTTCTGTTTGGGTACTGATA < 41bp 1 0.0118775352970183 1 0.0409823954105377 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41568607 chr17:41568616 nonsynonymous SNV 0.893 2 30 hm5C_associated_SNPs_40028 0 0 1 0 2 Cytosol 1 0.500235646770393 1 0.999528706459214 hm5C_site_39309 DeepMRMD:1;iRNA_m5C:0.999528706459214 39310 chr12 57906094 57906094 1 + G A UCEC 57906095 + 57906075 57906115 41 TCCTTGCTCAGCCCTAGGAGCTGAGGATAACTATACCTTGG TCCTTGCTCAGCCCTAGGAACTGAGGATAACTATACCTTGG < 41bp 1 0.572565905244711 1 0.365394949913025 experiment 0.854868189510578 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57906095 chr12:57906094 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_40029 0 0 1 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39310 DeepMRMD:1;iRNA_m5C:0.999536712157815 39311 chr6 150290462 150290462 1 + T G UCEC 150290478 + 150290458 150290498 41 AATTTTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT AATTGTTGATGTACTGGGAACAAATGCTGGATCCAACAAGT < 41bp 1 0.294563450101973 1 0.500697076320648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290478 chr6:150290462 nonsynonymous SNV 0.000 2 5 hm5C_associated_SNPs_40030 0 0 0 0 1 Nucleus 1 0.500229722642487 0.998605847358704 0.999540554715027 hm5C_site_39311 DeepMRMD:0.998605847358704;iRNA_m5C:0.999540554715027 39312 chr5 140573678 140573678 1 + C T UCEC 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTT < 41bp 1 0.180374570243715 1 0.0626581311225891 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573678 nonsynonymous SNV 0.004 1 41 hm5C_associated_SNPs_40031 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39312 DeepMRMD:1;iRNA_m5C:0.999536712157815 39313 chr19 806421 806421 1 + G T UCEC 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG TAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG < 41bp 1 0.257539069584035 1 0.0422988831996918 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806421 synonymous SNV . 0 1 hm5C_associated_SNPs_40032 0 0 1 0 1 Cytosol 1 0.500231643909117 1 0.999536712181767 hm5C_site_39313 DeepMRMD:1;iRNA_m5C:0.999536712181767 39314 chr11 20385796 20385796 1 + G A UCEC 20385777 + 20385757 20385797 41 GGCATCTGTCGATGTTATTTCCCCAGCATGGCCGAAACAGA GGCATCTGTCGATGTTATTTCCCCAGCATGGCCGAAACAAA < 41bp 1 0.520623118292848 1 0.612832188606262 experiment 0.958753763414304 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20385777 chr11:20385796 nonsynonymous SNV 0.013 1 40 hm5C_associated_SNPs_40033 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.774335622787476 0.999536712157815 hm5C_site_39314 DeepMRMD:0.774335622787476;iRNA_m5C:0.999536712157815 39315 chr11 20385796 20385796 1 + G A UCEC 20385778 + 20385758 20385798 41 GCATCTGTCGATGTTATTTCCCCAGCATGGCCGAAACAGAA GCATCTGTCGATGTTATTTCCCCAGCATGGCCGAAACAAAA < 41bp 1 0.462943591892416 1 0.497174769639969 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20385778 chr11:20385796 nonsynonymous SNV 0.013 1 39 hm5C_associated_SNPs_40034 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164031614 1 0.99953671936772 hm5C_site_39315 DeepMRMD:1;iRNA_m5C:0.99953671936772 39316 chr7 56130750 56130750 1 + G A UCEC 56130745 + 56130725 56130765 41 ATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTC ATTCTCTTGGTTGATGAGATCATGCAAGCTGGAATGTCTTC < 41bp 1 0.322298823262476 1 0.0893603563308716 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56130745 chr7:56130750 nonsynonymous SNV 0.998 2 26 hm5C_associated_SNPs_40035 0 0 0 0 1 Ribosome 1 0.500231622565467 1 0.999536754869065 hm5C_site_39316 DeepMRMD:1;iRNA_m5C:0.999536754869065 39317 chr20 61575005 61575005 1 + G A UCEC 61575018 + 61574998 61575038 41 AGGAGTCGCCCTTCGGAGACCTCCTCCACACCATGCAGAGG AGGAGTCACCCTTCGGAGACCTCCTCCACACCATGCAGAGG < 41bp 1 0.427440708327658 1 0.307430386543274 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GID8 ENSG00000101193 CDS Human protein_coding chr20:61575018 chr20:61575005 synonymous SNV . 0 8 hm5C_associated_SNPs_40036 0 0 1 0 1 Ribosome 1 0.50023164578879 1 0.99953670842242 hm5C_site_39317 DeepMRMD:1;iRNA_m5C:0.99953670842242 39318 chr14 71570328 71570328 1 + C A UCEC 71570324 + 71570304 71570344 41 AGCCACGAACAGCTTAAAGACATTCTTGGGGGTCCTATCAG AGCCACGAACAGCTTAAAGACATTATTGGGGGTCCTATCAG < 41bp 1 0.239958943128565 1 0.255856394767761 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71570324 chr14:71570328 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_40037 0 0 1 0 1 Endoplasmic reticulum 1 0.500232847339905 1 0.999534305320189 hm5C_site_39318 DeepMRMD:1;iRNA_m5C:0.999534305320189 39319 chr3 196533551 196533551 1 + G A UCEC 196533533 + 196533513 196533553 41 ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACGAA ACTGCTCCTCCCGTTATTGCCCCGCGACCGGATCATACAAA < 41bp 1 0.453695482438596 1 0.489784121513367 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAK2 ENSG00000180370 CDS Human protein_coding chr3:196533533 chr3:196533551 synonymous SNV . 0 39 hm5C_associated_SNPs_40038 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39319 DeepMRMD:1;iRNA_m5C:0.999536712157815 39320 chr9 133760703 133760703 1 + G A UCEC 133760722 + 133760702 133760742 41 CGAGTGTCTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGAT CAAGTGTCTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGAT < 41bp 1 0.0563875572097175 1 0.117209255695343 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760722 chr9:133760703 nonsynonymous SNV 0.994 4 2 hm5C_associated_SNPs_40039 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643473579 1 0.999536713052842 hm5C_site_39320 DeepMRMD:1;iRNA_m5C:0.999536713052842 39321 chr1 22838390 22838390 1 + G A UCEC 22838392 + 22838372 22838412 41 TTCATCTGTAAGGCCTGCGACAAAAGCTTCCATTTCTACTG TTCATCTGTAAGGCCTGCAACAAAAGCTTCCATTTCTACTG < 41bp 1 0.525551357467585 1 0.274048686027527 experiment 0.948897285064831 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22838392 chr1:22838390 nonsynonymous SNV 0.997 1 19 hm5C_associated_SNPs_40040 0 0 1 0 0 Nucleus 1 0.500232654526838 1 0.999534690946324 hm5C_site_39321 DeepMRMD:1;iRNA_m5C:0.999534690946324 39322 chr6 160212149 160212149 1 + T G UCEC 160212137 + 160212117 160212157 41 GGGCTGGCGGACGGTGTTTCCCTCCCGTGAGTTCTGGCACA GGGCTGGCGGACGGTGTTTCCCTCCCGTGAGTGCTGGCACA < 41bp 1 0.222234280766632 1 0.145305037498474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160212137 chr6:160212149 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_40041 0 0 1 0 1 Cytosol 1 0.500231643947013 1 0.999536712105974 hm5C_site_39322 DeepMRMD:1;iRNA_m5C:0.999536712105974 39323 chr11 6631427 6631427 1 + G T UCEC 6631418 + 6631398 6631438 41 AGACACAAACAGACGCTCAGCAGACATGTGGAGTTTTGCAG AGACACAAACAGACGCTCAGCAGACATGTTGAGTTTTGCAG < 41bp 1 0.256743272419938 1 0.388672471046448 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6631418 chr11:6631427 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_40042 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921831 1 0.999536712156338 hm5C_site_39323 DeepMRMD:1;iRNA_m5C:0.999536712156338 39324 chr1 109814335 109814335 1 + C T UCEC 109814318 + 109814298 109814338 41 AGCCCAGCCCTGACCCTGCTCTGACCACCAAGTCCACCCTG AGCCCAGCCCTGACCCTGCTCTGACCACCAAGTCCACTCTG < 41bp 1 0.173848841792666 1 0.0801485478878021 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109814318 chr1:109814335 synonymous SNV . 0 38 hm5C_associated_SNPs_40044 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_39324 DeepMRMD:1;iRNA_m5C:0.999536712157815 39325 chr3 49842031 49842031 1 + G A UCEC 49842020 + 49842000 49842040 41 CCACCATCCACGGCCCAAGTCCACCCCAGACGCCTGCCTGG CCACCATCCACGGCCCAAGTCCACCCCAGACACCTGCCTGG < 41bp 1 0.156629447595679 1 0.115615159273148 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM212A ENSG00000185614 CDS Human protein_coding chr3:49842020 chr3:49842031 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_40045 0 0 0 0 0 exosome 1 0.500231643878987 1 0.999536712242025 hm5C_site_39325 DeepMRMD:1;iRNA_m5C:0.999536712242025 39326 chr10 94757350 94757350 1 + C T UCEC 94757363 + 94757343 94757383 41 AGTTTAACTTAGATGTCATACAGTGTGAATGTAAGTACTAT AGTTTAATTTAGATGTCATACAGTGTGAATGTAAGTACTAT < 41bp 1 0.244474460861608 1 0.129523396492004 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94757363 chr10:94757350 synonymous SNV . 0 8 hm5C_associated_SNPs_40046 0 0 1 1 1 Cytosol 1 0.50023164654606 1 0.99953670690788 hm5C_site_39326 DeepMRMD:1;iRNA_m5C:0.99953670690788 39327 chr5 140347689 140347689 1 + A G UCEC 140347691 + 140347671 140347711 41 AGCCACAGATGGGGGAATACCGCAGCTCACATCCCTGCGTA AGCCACAGATGGGGGAATGCCGCAGCTCACATCCCTGCGTA < 41bp 1 0.598402421455285 1 0.917998194694519 experiment 0.803195157089429 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCDHAC2 ENSG00000243232 CDS Human protein_coding chr5:140347691 chr5:140347689 nonsynonymous SNV 0.967 0 19 hm5C_associated_SNPs_40047 0 0 0 0 0 exosome 1 0.500229915184796 0.164003610610962 0.999540169630407 hm5C_site_39327 DeepMRMD:0.164003610610962;iRNA_m5C:0.999540169630407 39328 chr17 7813839 7813839 1 + G A UCEC 7813827 + 7813807 7813847 41 CACGCTGTCCCGAATACCCCCCATCGCAGCCCGCCTTCAGA CACGCTGTCCCGAATACCCCCCATCGCAGCCCACCTTCAGA < 41bp 1 0.0280082230926398 1 0.11658975481987 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7813827 chr17:7813839 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_40048 0 0 1 0 2 Cytosol 1 0.500231644098318 1 0.999536711803364 hm5C_site_39328 DeepMRMD:1;iRNA_m5C:0.999536711803364 Refractive astigmatism 39329 chr17 7813839 7813839 1 + G A UCEC 7813828 + 7813808 7813848 41 ACGCTGTCCCGAATACCCCCCATCGCAGCCCGCCTTCAGAT ACGCTGTCCCGAATACCCCCCATCGCAGCCCACCTTCAGAT < 41bp 1 0.152258829152194 1 0.228510677814484 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7813828 chr17:7813839 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_40049 0 0 1 0 2 Cytosol 1 0.50023164393222 1 0.99953671213556 hm5C_site_39329 DeepMRMD:1;iRNA_m5C:0.99953671213556 39330 chr11 66258799 66258799 1 + G A UCEC 66258782 + 66258762 66258802 41 AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCGGGG AGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCAGGG < 41bp 1 0.137252532960447 1 0.178235054016113 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258782 chr11:66258799 nonsynonymous SNV 0.846 3 38 hm5C_associated_SNPs_40051 0 0 0 0 2 Nucleus 1 0.500231643921345 1 0.999536712157309 hm5C_site_39330 DeepMRMD:1;iRNA_m5C:0.999536712157309 39331 chr17 7479998 7479998 1 + C T UCEC 7480007 + 7479987 7480027 41 ATATGCTTAACCGGAGATACCTGTGTGAGTAATTCGGTTCT ATATGCTTAACTGGAGATACCTGTGTGAGTAATTCGGTTCT < 41bp 1 0.438672626246826 1 0.0770598948001862 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7480007 chr17:7479998 nonsynonymous SNV 0.910 2 12 hm5C_associated_SNPs_40052 0 0 1 0 1 Cytosol 1 0.500231643921173 1 0.999536712157654 hm5C_site_39331 DeepMRMD:1;iRNA_m5C:0.999536712157654 39332 chr11 73021085 73021085 1 + G A UCEC 73021096 + 73021076 73021116 41 CCAGATATCGCCTCAGAGACCCTGACGCTTCTCAGTTTCCT CCAGATATCACCTCAGAGACCCTGACGCTTCTCAGTTTCCT < 41bp 1 0.0743392551622047 1 0.0392370223999023 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73021096 chr11:73021085 nonsynonymous SNV 0.994 2 10 hm5C_associated_SNPs_40053 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39332 DeepMRMD:1;iRNA_m5C:0.999536712157815 39333 chr14 21544546 21544546 1 + C T UCEC 21544565 + 21544545 21544585 41 CCGTCCTGCTGGACCTTCGTCAGGCACCTCCACTGCCTCCA CTGTCCTGCTGGACCTTCGTCAGGCACCTCCACTGCCTCCA < 41bp 1 0.650601866236848 1 0.904685497283936 experiment 0.698796267526303 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544565 chr14:21544546 synonymous SNV . 0 2 hm5C_associated_SNPs_40054 0 0 0 0 2 Cytosol 1 0.50023164392109 0.190629005432128 0.999536712157821 hm5C_site_39333 DeepMRMD:0.190629005432128;iRNA_m5C:0.999536712157821 39334 chr15 52356744 52356744 1 + C T UCEC 52356737 + 52356717 52356757 41 GAAAAGTTTGATATCAAAGTCAGTAAGCCAAGAAAAACAGG GAAAAGTTTGATATCAAAGTCAGTAAGTCAAGAAAAACAGG < 41bp 1 0.446275949280339 1 0.175006657838821 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356737 chr15:52356744 synonymous SNV . 0 28 hm5C_associated_SNPs_40056 0 0 0 0 0 Ribosome 1 0.500231643921256 1 0.999536712157489 hm5C_site_39334 DeepMRMD:1;iRNA_m5C:0.999536712157489 39335 chr11 61111359 61111359 1 + C T UCEC 61111346 + 61111326 61111366 41 AGATGCTGAAACCACTGCAGCAGCCTGGCCTAACGTGGCTG AGATGCTGAAACCACTGCAGCAGCCTGGCCTAATGTGGCTG < 41bp 1 0.228883398146264 1 0.440920323133469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61111346 chr11:61111359 synonymous SNV . 0 34 hm5C_associated_SNPs_40057 0 0 1 0 2 Cytosol 1 0.500231573704867 1 0.999536852590266 hm5C_site_39335 DeepMRMD:1;iRNA_m5C:0.999536852590266 39336 chr19 11145710 11145710 1 + A G UCEC 11145691 + 11145671 11145711 41 TCGTGGATCATCAAGGACGACGCGGAGGTGGAGCGGCTGAC TCGTGGATCATCAAGGACGACGCGGAGGTGGAGCGGCTGGC < 41bp 1 0.687353102486787 1 0.717812418937683 experiment 0.625293795026427 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145691 chr19:11145710 nonsynonymous SNV 0.999 1 40 hm5C_associated_SNPs_40058 0 0 1 0 0 Nucleus 1 0.500231643896715 0.564375162124634 0.99953671220657 hm5C_site_39336 DeepMRMD:0.564375162124634;iRNA_m5C:0.99953671220657 39337 chr19 11145710 11145710 1 + A G UCEC 11145704 + 11145684 11145724 41 AGGACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAG AGGACGACGCGGAGGTGGAGCGGCTGGCCTGTGAGGAGGAG < 41bp 1 0.475516321985059 1 0.410296261310577 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145704 chr19:11145710 nonsynonymous SNV 0.999 1 27 hm5C_associated_SNPs_40059 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_39337 DeepMRMD:1;iRNA_m5C:0.999536712157816 39338 chr19 11145710 11145710 1 + A G UCEC 11145707 + 11145687 11145727 41 ACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG ACGACGCGGAGGTGGAGCGGCTGGCCTGTGAGGAGGAGGAG < 41bp 1 0.428856643081269 1 0.419997096061707 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145707 chr19:11145710 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_40060 0 0 1 0 0 Nucleus 1 0.500231643920007 1 0.999536712159987 hm5C_site_39338 DeepMRMD:1;iRNA_m5C:0.999536712159987 39339 chr6 160494428 160494428 1 + T C UCEC 160494408 + 160494388 160494428 41 TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAC < 41bp 1 0.390068324110585 1 0.901953816413879 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494408 chr6:160494428 nonsynonymous SNV 0.922 1 41 hm5C_associated_SNPs_40061 0 0 1 0 1 Endoplasmic reticulum 1 0.500231694657352 0.196092367172242 0.999536610685295 hm5C_site_39339 DeepMRMD:0.196092367172242;iRNA_m5C:0.999536610685295 39340 chr19 10886489 10886489 1 + C T UCEC 10886497 + 10886477 10886517 41 CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAC CAGTTCATCAGCTGGGAGAGCAGCCTCATTCTGGCTGTCAC < 41bp 1 0.215418984123519 1 0.194492369890213 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886497 chr19:10886489 nonsynonymous SNV 0.998 5 13 hm5C_associated_SNPs_40062 0 0 1 1 1 Nucleus 1 0.500228037146972 1 0.999543925706056 hm5C_site_39340 DeepMRMD:1;iRNA_m5C:0.999543925706056 39341 chr2 113260548 113260548 1 + G A UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCAGACTGCTTCAGAACCATATCATGTTGATA < 41bp 1 0.409576084781862 1 0.465059250593185 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260548 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_40063 0 0 1 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39341 DeepMRMD:1;iRNA_m5C:0.999536712157815 39342 chr10 75871772 75871772 1 + C T UCEC 75871762 + 75871742 75871782 41 GTCCCCCCTGACATGGAAGACGATTACGAACCTGAGCTGCT GTCCCCCCTGACATGGAAGACGATTACGAATCTGAGCTGCT < 41bp 1 0.0756876372355463 1 0.0946898758411407 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871762 chr10:75871772 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_40064 0 0 1 0 1 Nucleus 1 0.500231645990995 1 0.99953670801801 hm5C_site_39342 DeepMRMD:1;iRNA_m5C:0.99953670801801 39343 chr2 7154633 7154633 1 + G T UCEC 7154652 + 7154632 7154672 41 TGCAATTAGCTGCCCAGATGCTGCCTGCCCTAAACAGGGCC TTCAATTAGCTGCCCAGATGCTGCCTGCCCTAAACAGGGCC < 41bp 1 0.40545555018823 1 0.67503035068512 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF144A ENSG00000151692 CDS Human protein_coding chr2:7154652 chr2:7154633 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_40065 0 0 0 0 1 Nucleus 1 0.50023164392122 0.64993929862976 0.99953671215756 hm5C_site_39343 DeepMRMD:0.64993929862976;iRNA_m5C:0.99953671215756 39344 chr17 2266367 2266367 1 + G A UCEC 2266362 + 2266342 2266382 41 CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGG CCCTCTGCTGATGAGCTGGTCCAGCAGCACCGCATCCGGGG < 41bp 1 0.107439343208686 1 0.187005341053009 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266362 chr17:2266367 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_40066 0 0 1 0 2 Cytosol 1 0.500231643925268 1 0.999536712149465 hm5C_site_39344 DeepMRMD:1;iRNA_m5C:0.999536712149465 39345 chr17 2266367 2266367 1 + G A UCEC 2266363 + 2266343 2266383 41 CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGGT CCTCTGCTGATGAGCTGGTCCAGCAGCACCGCATCCGGGGT < 41bp 1 0.631597065896158 1 0.538245737552643 experiment 0.736805868207684 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266363 chr17:2266367 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_40067 0 0 1 0 2 Cytosol 1 0.500231643927589 0.923508524894714 0.999536712144821 hm5C_site_39345 DeepMRMD:0.923508524894714;iRNA_m5C:0.999536712144821 39346 chr8 124787444 124787444 1 + G T UCEC 124787439 + 124787419 124787459 41 TATGAGGAACTGCTAAAGTACAGCCGAGATCATCTCATGCT TATGAGGAACTGCTAAAGTACAGCCTAGATCATCTCATGCT < 41bp 1 0.379725405053639 1 0.129114270210266 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124787439 chr8:124787444 nonsynonymous SNV 0.990 2 26 hm5C_associated_SNPs_40068 0 0 0 0 2 Ribosome 1 0.500231668158707 1 0.999536663682586 hm5C_site_39346 DeepMRMD:1;iRNA_m5C:0.999536663682586 39347 chr5 64881995 64881995 1 + C T UCEC 64881981 + 64881961 64882001 41 GGATCAAATACTAATGGATCCCAGTTTTTCATAACGGTAGT GGATCAAATACTAATGGATCCCAGTTTTTCATAATGGTAGT < 41bp 1 0.284693974171623 1 0.157161951065063 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64881981 chr5:64881995 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_40069 0 0 1 0 1 chromatin 1 0.500231643921083 1 0.999536712157834 hm5C_site_39347 DeepMRMD:1;iRNA_m5C:0.999536712157834 39348 chr16 57075446 57075446 1 + G A UCEC 57075442 + 57075422 57075462 41 AAGCACCTAGAGCAGCTCTGCAAGGCTCTGGGAGGAAGCTG AAGCACCTAGAGCAGCTCTGCAAGACTCTGGGAGGAAGCTG < 41bp 1 0.607464126523554 1 0.386438071727753 experiment 0.785071746952893 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57075442 chr16:57075446 nonsynonymous SNV 0.045 1 25 hm5C_associated_SNPs_40070 0 0 0 0 2 Ribosome 1 0.500231643984292 1 0.999536712031416 hm5C_site_39348 DeepMRMD:1;iRNA_m5C:0.999536712031416 39349 chr11 129996710 129996710 1 + C T UCEC 129996707 + 129996687 129996727 41 GAGCAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGT GAGCAGCTGGAGATTCGGCACCGTAACCGAATGGACAGGGT < 41bp 1 0.244080379400953 1 0.0522349178791046 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:129996707 chr11:129996710 synonymous SNV . 0 24 hm5C_associated_SNPs_40071 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_39349 DeepMRMD:1;iRNA_m5C:0.999536712157815 39350 chrX 48925554 48925554 1 + C T UCEC 48925566 + 48925546 48925586 41 GGGCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCC GGGCCAGGTGCTGTACGGGGCCCCCAGCCAGGCGCCACTCC < 41bp 1 0.0980018927572641 1 0.0546047687530518 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925566 chrX:48925554 nonsynonymous SNV 0.994 1 9 hm5C_associated_SNPs_40072 0 0 0 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39350 DeepMRMD:1;iRNA_m5C:0.999536712157815 39351 chrX 48925554 48925554 1 + C T UCEC 48925567 + 48925547 48925587 41 GGCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCC GGCCAGGTGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCC < 41bp 1 0.455828830407699 1 0.163214921951294 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925567 chrX:48925554 nonsynonymous SNV 0.994 1 8 hm5C_associated_SNPs_40073 0 0 0 0 1 cytosol 1 0.50023164666314 1 0.999536706673719 hm5C_site_39351 DeepMRMD:1;iRNA_m5C:0.999536706673719 39352 chrX 48925554 48925554 1 + C T UCEC 48925568 + 48925548 48925588 41 GCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCA GCCAGGTGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCA < 41bp 1 0.172298398322529 1 0.0855951905250549 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925568 chrX:48925554 nonsynonymous SNV 0.994 1 7 hm5C_associated_SNPs_40074 0 0 0 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39352 DeepMRMD:1;iRNA_m5C:0.999536712157815 39353 chrX 48925554 48925554 1 + C T UCEC 48925569 + 48925549 48925589 41 CCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCAC CCAGGTGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCAC < 41bp 1 0.171585938121355 1 0.502779304981232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925569 chrX:48925554 nonsynonymous SNV 0.994 1 6 hm5C_associated_SNPs_40075 0 0 0 0 1 cytosol 1 0.500231643106858 0.994441390037536 0.999536713786285 hm5C_site_39353 DeepMRMD:0.994441390037536;iRNA_m5C:0.999536713786285 39354 chrX 48925554 48925554 1 + C T UCEC 48925570 + 48925550 48925590 41 CAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACA CAGGTGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACA < 41bp 1 0.334321225684163 1 0.479560375213623 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925570 chrX:48925554 nonsynonymous SNV 0.994 1 5 hm5C_associated_SNPs_40076 0 0 0 0 1 cytosol 1 0.500231643921125 1 0.99953671215775 hm5C_site_39354 DeepMRMD:1;iRNA_m5C:0.99953671215775 39355 chrX 48925554 48925554 1 + C T UCEC 48925573 + 48925553 48925593 41 GCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTC GTGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTC < 41bp 1 0.513867696362275 1 0.889070272445679 experiment 0.972264607275449 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925573 chrX:48925554 nonsynonymous SNV 0.994 1 2 hm5C_associated_SNPs_40077 0 0 0 0 1 cytosol 1 0.500231643921331 0.221859455108642 0.999536712157339 hm5C_site_39355 DeepMRMD:0.221859455108642;iRNA_m5C:0.999536712157339 39356 chrX 48925554 48925554 1 + C T UCEC 48925574 + 48925554 48925594 41 CGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTCG TGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTCG < 41bp 1 0.620560203534743 1 0.940375208854675 experiment 0.758879592930513 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48925574 chrX:48925554 nonsynonymous SNV 0.994 1 1 hm5C_associated_SNPs_40078 0 0 0 0 1 cytosol 1 0.500231643918248 0.11924958229065 0.999536712163503 hm5C_site_39356 DeepMRMD:0.11924958229065;iRNA_m5C:0.999536712163503 39357 chr5 33455750 33455750 1 + G T UCEC 33455756 + 33455736 33455776 41 AGAAAATCATTAAAGAAAAACAAGCTTTTGAAAGACTGGAA AGAAAATCATTAAATAAAAACAAGCTTTTGAAAGACTGGAA < 41bp 1 0.29407817291201 1 0.308154284954071 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33455756 chr5:33455750 stopgain 1.000 1 15 hm5C_associated_SNPs_40079 0 0 1 0 2 Nucleus 1 0.500231642071024 1 0.999536715857953 hm5C_site_39357 DeepMRMD:1;iRNA_m5C:0.999536715857953 39358 chr19 4954466 4954466 1 + G T UCEC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGTACGGGCAAGG < 41bp 1 0.263825340845915 1 0.526093065738678 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954466 . 0.009 0 31 hm5C_associated_SNPs_40080 0 0 0 0 1 chromatin 1 0.500231643921766 0.947813868522644 0.999536712156469 hm5C_site_39358 DeepMRMD:0.947813868522644;iRNA_m5C:0.999536712156469 39359 chr19 4954466 4954466 1 + G T UCEC 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTCGCGTCCCCCAGTACGGGCAAGGGCAA < 41bp 1 0.620552434556894 1 0.392897218465805 experiment 0.758895130886212 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954466 . 0.009 0 27 hm5C_associated_SNPs_40081 0 0 0 0 1 chromatin 1 0.500231672882822 1 0.999536654234355 hm5C_site_39359 DeepMRMD:1;iRNA_m5C:0.999536654234355 39360 chr9 131386726 131386726 1 + T C UCEC 131386723 + 131386703 131386743 41 CTGGATGAGAACTCGGCCTTCCTTCAGTTCAACTGGAAGGC CTGGATGAGAACTCGGCCTTCCTCCAGTTCAACTGGAAGGC < 41bp 1 0.0346695005411939 1 0.0874844491481781 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131386723 chr9:131386726 synonymous SNV . 0 24 hm5C_associated_SNPs_40082 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_39360 DeepMRMD:1;iRNA_m5C:0.999536712157813 39361 chr16 57787135 57787135 1 + G A UCEC 57787133 + 57787113 57787153 41 CCAACCCCAGCGCCCCCCTCCGGCGCATCTATGAGCGGCCC CCAACCCCAGCGCCCCCCTCCGACGCATCTATGAGCGGCCC < 41bp 1 0.482338964479688 1 0.620922684669495 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57787133 chr16:57787135 synonymous SNV . 0 23 hm5C_associated_SNPs_40083 0 0 0 0 1 Cytosol 1 0.500231643921066 0.75815463066101 0.999536712157868 hm5C_site_39361 DeepMRMD:0.75815463066101;iRNA_m5C:0.999536712157868 39362 chr9 96079886 96079886 1 + G A UCEC 96079899 + 96079879 96079919 41 CGGAGCCGCCCCGACCCTGTCCGTGCCCACACCAGGTACTG CGGAGCCACCCCGACCCTGTCCGTGCCCACACCAGGTACTG < 41bp 1 0.121240852865365 1 0.0741930305957794 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WNK2 ENSG00000165238 CDS Human protein_coding chr9:96079899 chr9:96079886 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_40084 0 0 1 0 2 Nucleus 1 0.500231643561831 1 0.999536712876338 hm5C_site_39362 DeepMRMD:1;iRNA_m5C:0.999536712876338 39363 chr20 60882657 60882657 1 + G A UCEC 60882662 + 60882642 60882682 41 CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCCCG CTCTTCGCAGCTCCCAGAGCCAGTCGGCAGCGGTCACCCCG < 41bp 1 0.309629708333714 1 0.570574700832367 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882662 chr20:60882657 nonsynonymous SNV 0.999 1 16 hm5C_associated_SNPs_40085 0 0 1 0 1 Ribosome 1 0.500231643987567 0.858850598335266 0.999536712024865 hm5C_site_39363 DeepMRMD:0.858850598335266;iRNA_m5C:0.999536712024865 39364 chr3 51980296 51980296 1 + T G UCEC 51980280 + 51980260 51980300 41 GCCATCCTCACTAGTGGGCTCCGCATCATGCCACATTCTGG GCCATCCTCACTAGTGGGCTCCGCATCATGCCACATGCTGG < 41bp 1 0.370370599579617 1 0.187888234853745 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PARP3 ENSG00000041880 CDS Human protein_coding chr3:51980280 chr3:51980296 nonsynonymous SNV 0.998 4 37 hm5C_associated_SNPs_40086 0 0 1 0 1 nucleus 1 0.50023333171526 1 0.99953333656948 hm5C_site_39364 DeepMRMD:1;iRNA_m5C:0.99953333656948 39365 chr18 33709906 33709906 1 + C T UCEC 33709886 + 33709866 33709906 41 CTCTTGTTTGTGCGGCTGACCAGTTGGCGACATGGTGGCAC CTCTTGTTTGTGCGGCTGACCAGTTGGCGACATGGTGGCAT < 41bp 1 0.51681892533867 1 0.546492040157318 experiment 0.96636214932266 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ELP2 ENSG00000134759 CDS Human protein_coding chr18:33709886 chr18:33709906 nonsynonymous SNV 0.029 0 41 hm5C_associated_SNPs_40087 0 0 1 0 0 Nucleus 1 0.500222350748532 0.907015919685364 0.999555298502936 hm5C_site_39365 DeepMRMD:0.907015919685364;iRNA_m5C:0.999555298502936 39366 chr10 70525812 70525812 1 + G T UCEC 70525803 + 70525783 70525823 41 TTGAGTGTCCTATTGGACTACAGATTAGAGGATAATAAAGA TTGAGTGTCCTATTGGACTACAGATTAGATGATAATAAAGA < 41bp 1 0.223302433390695 1 0.223011195659637 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70525803 chr10:70525812 nonsynonymous SNV 0.992 3 30 hm5C_associated_SNPs_40088 0 0 1 0 1 Nucleus 1 0.500231784745308 1 0.999536430509384 hm5C_site_39366 DeepMRMD:1;iRNA_m5C:0.999536430509384 39367 chr16 69356471 69356471 1 + C T UCEC 69356472 + 69356452 69356492 41 TTTGGTTTCAGGTCTGTGGCCCCTCTCGCACCAACCCCAGC TTTGGTTTCAGGTCTGTGGTCCCTCTCGCACCAACCCCAGC < 41bp 1 0.0617795465001522 1 0.0500263869762421 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS4A ENSG00000132612 CDS Human protein_coding chr16:69356472 chr16:69356471 synonymous SNV . 0 20 hm5C_associated_SNPs_40089 0 0 1 0 1 Cytosol 1 0.500225762897163 1 0.999548474205673 hm5C_site_39367 DeepMRMD:1;iRNA_m5C:0.999548474205673 39368 chr17 48562201 48562201 1 + C A UCEC 48562204 + 48562184 48562224 41 TGGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACA TGGCAGCAGAGAACCCCATCCCCTGTGCCAGGAGGATGACA < 41bp 1 0.181544022342287 1 0.241706967353821 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562204 chr17:48562201 synonymous SNV . 0 18 hm5C_associated_SNPs_40090 0 0 0 0 1 Ribosome 1 0.500231625605434 1 0.999536748789132 hm5C_site_39368 DeepMRMD:1;iRNA_m5C:0.999536748789132 39369 chr17 48562201 48562201 1 + C A UCEC 48562205 + 48562185 48562225 41 GGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACAA GGCAGCAGAGAACCCCATCCCCTGTGCCAGGAGGATGACAA < 41bp 1 0.177919059699538 1 0.41158452630043 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562205 chr17:48562201 synonymous SNV . 0 17 hm5C_associated_SNPs_40091 0 0 0 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_39369 DeepMRMD:1;iRNA_m5C:0.999536712157812 39370 chr1 44134861 44134861 1 + G T UCEC 44134847 + 44134827 44134867 41 AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCTG AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGATGATCTG < 41bp 1 0.26760088366288 1 0.026537150144577 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134847 chr1:44134861 nonsynonymous SNV 0.999 1 35 hm5C_associated_SNPs_40092 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39370 DeepMRMD:1;iRNA_m5C:0.999536712157815 39371 chr12 94563011 94563011 1 + C T UCEC 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGCATCGTGGTAAT < 41bp 1 0.0701489142801134 1 0.0716464817523956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563011 nonsynonymous SNV 0.999 3 32 hm5C_associated_SNPs_40093 0 0 1 0 2 chromatin 1 0.500231308126505 1 0.999537383746989 hm5C_site_39371 DeepMRMD:1;iRNA_m5C:0.999537383746989 39372 chr2 198571396 198571396 1 + G A UCEC 198571398 + 198571378 198571418 41 CCTTCTGAGACCTACCCAGCCTTCTGCACTACCTGCTTCCC CCTTCTGAGACCTACCCAACCTTCTGCACTACCTGCTTCCC < 41bp 1 0.288819154098675 1 0.0215936601161957 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARS2 ENSG00000247626 CDS Human protein_coding chr2:198571398 chr2:198571396 nonsynonymous SNV 0.098 0 19 hm5C_associated_SNPs_40094 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_39372 DeepMRMD:1;iRNA_m5C:0.999536712157815 39373 chr9 7174667 7174667 1 + G A UCEC 7174666 + 7174646 7174686 41 TTTAAGAATGAATATGTGGCCGACCCTGTATACCGCACTTT TTTAAGAATGAATATGTGGCCAACCCTGTATACCGCACTTT < 41bp 1 0.108935436712505 1 0.0330900549888611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4C ENSG00000107077 CDS Human protein_coding chr9:7174666 chr9:7174667 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_40095 0 0 0 0 0 Nucleus 1 0.500231657408626 1 0.999536685182747 hm5C_site_39373 DeepMRMD:1;iRNA_m5C:0.999536685182747 39374 chr6 107102657 107102657 1 + C A UCEC 107102660 + 107102640 107102680 41 GTCTCTTTGGTCCAAAGCTGCTGACCTCTTTGAGTCTGAGG GTCTCTTTGGTCCAAAGATGCTGACCTCTTTGAGTCTGAGG < 41bp 1 0.280794552650075 1 0.102718412876129 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107102660 chr6:107102657 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_40096 0 0 0 0 1 Ribosome 1 0.500231644171959 1 0.999536711656081 hm5C_site_39374 DeepMRMD:1;iRNA_m5C:0.999536711656081 39375 chr19 10202240 10202240 1 + C A UCEC 10202247 + 10202227 10202267 41 CCCGCGCTGGGACCGGGACCCGGATCGCCGCAGCACCCACA CCCGCGCTGGGACAGGGACCCGGATCGCCGCAGCACCCACA < 41bp 1 0.50426108788863 1 0.81847882270813 experiment 0.99147782422274 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10202247 chr19:10202240 synonymous SNV . 0 14 hm5C_associated_SNPs_40097 0 0 0 0 2 Ribosome 1 0.500231644381426 0.36304235458374 0.999536711237148 hm5C_site_39375 DeepMRMD:0.36304235458374;iRNA_m5C:0.999536711237148 39376 chrX 135593877 135593877 1 + C T UCEC 135593870 + 135593850 135593890 41 AATATGCAGATGAAAAGGGGCTTGAAGCTGCTGATAAAAAG AATATGCAGATGAAAAGGGGCTTGAAGTTGCTGATAAAAAG < 41bp 1 0.332831596397765 1 0.212898731231689 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593870 chrX:135593877 nonsynonymous SNV 0.276 1 28 hm5C_associated_SNPs_40098 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39376 DeepMRMD:1;iRNA_m5C:0.999536712157815 39377 chrX 135593877 135593877 1 + C T UCEC 135593880 + 135593860 135593900 41 TGAAAAGGGGCTTGAAGCTGCTGATAAAAAGGCGGAAGAAG TGAAAAGGGGCTTGAAGTTGCTGATAAAAAGGCGGAAGAAG < 41bp 1 0.372425809511947 1 0.215542644262314 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593880 chrX:135593877 nonsynonymous SNV 0.276 1 18 hm5C_associated_SNPs_40099 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39377 DeepMRMD:1;iRNA_m5C:0.999536712157815 39378 chr1 145663165 145663165 1 + G T UCEC 145663167 + 145663147 145663187 41 GGTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTT GGTCTTTACTAGCTTTGGTGCCATTTGGATCACACGATGTT < 41bp 1 0.0238772200394217 1 0.0394192039966583 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663167 chr1:145663165 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_40100 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_39378 DeepMRMD:1;iRNA_m5C:0.999536712157815 39379 chr1 145663165 145663165 1 + G T UCEC 145663168 + 145663148 145663188 41 GTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTTT GTCTTTACTAGCTTTGGTGCCATTTGGATCACACGATGTTT < 41bp 1 0.0351544792345624 1 0.0725966989994049 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF115 ENSG00000121848 CDS Human other chr1:145663168 chr1:145663165 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_40101 0 0 1 0 1 Nucleus 1 0.500231835279536 1 0.999536329440929 hm5C_site_39379 DeepMRMD:1;iRNA_m5C:0.999536329440929 39380 chr16 53504343 53504343 1 + A G UCEC 53504331 + 53504311 53504351 41 TGGAGGGATAACATTCTTCCCTGTCCAAGTCAATGTTGGGG TGGAGGGATAACATTCTTCCCTGTCCAAGTCAGTGTTGGGG < 41bp 1 0.114299992621982 1 0.246370166540146 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBL2 ENSG00000103479 CDS Human protein_coding chr16:53504331 chr16:53504343 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_40102 0 0 1 0 1 Ribosome 1 0.500231622915272 1 0.999536754169457 hm5C_site_39380 DeepMRMD:1;iRNA_m5C:0.999536754169457 39381 chr3 183368419 183368419 1 + G T UCEC 183368408 + 183368388 183368428 41 GCTGTGCTCTCAGCCTGTAGCAGCTACTTCAGAGCTATGTT GCTGTGCTCTCAGCCTGTAGCAGCTACTTCATAGCTATGTT < 41bp 1 0.540101425064317 1 0.337709724903107 experiment 0.919797149871365 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183368408 chr3:183368419 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_40104 0 0 1 0 0 Ribosome 1 0.500231669272376 1 0.999536661455247 hm5C_site_39381 DeepMRMD:1;iRNA_m5C:0.999536661455247 39382 chr1 79128397 79128397 1 + A C UCEC 79128401 + 79128381 79128421 41 TATTGCAGCTAGAGGAAGTCCAAAGAAAACTTGGATTTGCT TATTGCAGCTAGAGGACGTCCAAAGAAAACTTGGATTTGCT < 41bp 1 0.322527195220241 1 0.3644959628582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IFI44 ENSG00000137965 CDS Human protein_coding chr1:79128401 chr1:79128397 nonsynonymous SNV 0.001 0 17 hm5C_associated_SNPs_40105 0 0 0 0 1 exosome 1 0.500230394136179 1 0.999539211727643 hm5C_site_39382 DeepMRMD:1;iRNA_m5C:0.999539211727643 39383 chr12 46215259 46215259 1 + G T UCEC 46215264 + 46215244 46215284 41 GAGAAGACTGATAGAGACTTCGTTAAGGTAAATCATTTTAA GAGAAGACTGATAGATACTTCGTTAAGGTAAATCATTTTAA < 41bp 1 0.0979431004559117 1 0.261724412441254 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID2 ENSG00000189079 CDS Human protein_coding chr12:46215264 chr12:46215259 nonsynonymous SNV 0.998 3 16 hm5C_associated_SNPs_40106 0 0 1 0 2 Nucleus 1 0.500231655619425 1 0.999536688761151 hm5C_site_39383 DeepMRMD:1;iRNA_m5C:0.999536688761151 39384 chr7 130021583 130021583 1 + A C UCEC 130021565 + 130021545 130021585 41 GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGA GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGCGA < 41bp 1 0.223238682625144 1 0.136224448680878 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021565 chr7:130021583 nonsynonymous SNV 0.002 0 39 hm5C_associated_SNPs_40107 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644634358 1 0.999536710731284 hm5C_site_39384 DeepMRMD:1;iRNA_m5C:0.999536710731284 39385 chr7 130021583 130021583 1 + A C UCEC 130021566 + 130021546 130021586 41 GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGAC GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGCGAC < 41bp 1 0.388288573848736 1 0.510036826133728 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021566 chr7:130021583 nonsynonymous SNV 0.002 0 38 hm5C_associated_SNPs_40108 0 0 0 0 1 Endoplasmic reticulum 1 0.500231654785466 0.979926347732544 0.999536690429067 hm5C_site_39385 DeepMRMD:0.979926347732544;iRNA_m5C:0.999536690429067 39386 chr7 130021583 130021583 1 + A C UCEC 130021572 + 130021552 130021592 41 ATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT ATCTTTCTGGAGTCCCACGGCATCAGCTATGCGACCATGAT < 41bp 1 0.351650815801541 1 0.464314848184586 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021572 chr7:130021583 nonsynonymous SNV 0.002 0 32 hm5C_associated_SNPs_40111 0 0 0 0 1 Endoplasmic reticulum 1 0.500231665964239 1 0.999536668071522 hm5C_site_39386 DeepMRMD:1;iRNA_m5C:0.999536668071522 39387 chr7 130021583 130021583 1 + A C UCEC 130021575 + 130021555 130021595 41 TTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGA TTTCTGGAGTCCCACGGCATCAGCTATGCGACCATGATCGA < 41bp 1 0.689172886866864 1 0.516264915466309 experiment 0.621654226266272 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021575 chr7:130021583 nonsynonymous SNV 0.002 0 29 hm5C_associated_SNPs_40112 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164412487 0.967470169067382 0.999536711750261 hm5C_site_39387 DeepMRMD:0.967470169067382;iRNA_m5C:0.999536711750261 39388 chr7 130021583 130021583 1 + A C UCEC 130021578 + 130021558 130021598 41 CTGGAGTCCCACGGCATCAGCTATGAGACCATGATCGAGGA CTGGAGTCCCACGGCATCAGCTATGCGACCATGATCGAGGA < 41bp 1 0.394487849046389 1 0.2722187936306 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021578 chr7:130021583 nonsynonymous SNV 0.002 0 26 hm5C_associated_SNPs_40113 0 0 0 0 1 Endoplasmic reticulum 1 0.500231756760879 1 0.999536486478242 hm5C_site_39388 DeepMRMD:1;iRNA_m5C:0.999536486478242 39389 chr7 130021583 130021583 1 + A C UCEC 130021586 + 130021566 130021606 41 CCACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGT CCACGGCATCAGCTATGCGACCATGATCGAGGACGTGCAGT < 41bp 1 0.107150553001617 1 0.0240089893341064 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021586 chr7:130021583 nonsynonymous SNV 0.002 0 18 hm5C_associated_SNPs_40114 0 0 0 0 1 Endoplasmic reticulum 1 0.500220712784275 1 0.999558574431449 hm5C_site_39389 DeepMRMD:1;iRNA_m5C:0.999558574431449 39390 chr7 130021583 130021583 1 + A C UCEC 130021587 + 130021567 130021607 41 CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTC CACGGCATCAGCTATGCGACCATGATCGAGGACGTGCAGTC < 41bp 1 0.656573856969171 1 0.135350257158279 experiment 0.686852286061657 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021587 chr7:130021583 nonsynonymous SNV 0.002 0 17 hm5C_associated_SNPs_40115 0 0 0 0 1 Endoplasmic reticulum 1 0.50023169093002 1 0.999536618139959 hm5C_site_39390 DeepMRMD:1;iRNA_m5C:0.999536618139959 39391 chr20 11900395 11900395 1 + C T UCEC 11900386 + 11900366 11900406 41 TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCGATGTT TATGTTTTAGCTGTTGGGAGCTCTGTGTTTCATGCGATGTT < 41bp 1 0.166129702972789 1 0.140085220336914 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900386 chr20:11900395 synonymous SNV . 0 30 hm5C_associated_SNPs_40116 0 0 1 0 2 Cytosol 1 0.500231640946437 1 0.999536718107126 hm5C_site_39391 DeepMRMD:1;iRNA_m5C:0.999536718107126 39392 chr2 233681725 233681725 1 + C T UCEC 233681730 + 233681710 233681750 41 CGAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGTATGTAT CGAGAGGAAGAAGAATTTGCCCGAAGGAAACAGGTATGTAT < 41bp 1 0.481206134770813 1 0.459880411624908 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681730 chr2:233681725 nonsynonymous SNV 0.997 3 16 hm5C_associated_SNPs_40118 0 0 1 0 0 Nucleus 1 0.500227323229152 1 0.999545353541697 hm5C_site_39392 DeepMRMD:1;iRNA_m5C:0.999545353541697 39393 chr6 34213045 34213045 1 + C T UCEC 34213033 + 34213013 34213053 41 GGGCTTTTGGTTTGGGGGCGCCCTCTCTGCTCCTTCACTGT GGGCTTTTGGTTTGGGGGCGCCCTCTCTGCTCTTTCACTGT < 41bp 1 0.0901860658521138 1 0.0503885447978973 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HMGA1 ENSG00000137309 CDS Human protein_coding chr6:34213033 chr6:34213045 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_40119 0 0 1 1 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39393 DeepMRMD:1;iRNA_m5C:0.999536712157815 39394 chr6 34213045 34213045 1 + C T UCEC 34213050 + 34213030 34213070 41 GCGCCCTCTCTGCTCCTTCACTGTTCCCTCTGGCTTCCCAT GCGCCCTCTCTGCTCTTTCACTGTTCCCTCTGGCTTCCCAT < 41bp 1 0.419861968137392 1 0.0167401731014252 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HMGA1 ENSG00000137309 CDS Human protein_coding chr6:34213050 chr6:34213045 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_40120 0 0 1 1 0 Cytosol 1 0.500231643929332 1 0.999536712141337 hm5C_site_39394 DeepMRMD:1;iRNA_m5C:0.999536712141337 39395 chr12 124239058 124239058 1 + T G UCEC 124239064 + 124239044 124239084 41 CTCCTACCTGAGGCTCTGGGCGCTTAGCCTGGCTCACGCAC CTCCTACCTGAGGCGCTGGGCGCTTAGCCTGGCTCACGCAC < 41bp 1 0.268632294776378 1 0.124184370040894 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239064 chr12:124239058 nonsynonymous SNV 1.000 5 15 hm5C_associated_SNPs_40121 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921491 1 0.999536712157018 hm5C_site_39395 DeepMRMD:1;iRNA_m5C:0.999536712157018 39396 chr18 77728114 77728114 1 + G T UCEC 77728106 + 77728086 77728126 41 TACTGGAAGAAATGGGAAATCGCATTGAGGACTTACAGAAG TACTGGAAGAAATGGGAAATCGCATTGATGACTTACAGAAG < 41bp 1 0.616302551027837 1 0.521259844303131 experiment 0.767394897944326 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 CDS Human protein_coding chr18:77728106 chr18:77728114 nonsynonymous SNV 0.952 0 29 hm5C_associated_SNPs_40122 0 0 1 0 1 Cytosol 1 0.50023164463472 0.957480311393738 0.999536710730561 hm5C_site_39396 DeepMRMD:0.957480311393738;iRNA_m5C:0.999536710730561 39397 chr11 66834288 66834288 1 + C T UCEC 66834276 + 66834256 66834296 41 AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAG AGCGTCCTGCTGCTTTGCTTCGATGTCACCAGTCCGAACAG < 41bp 1 0.51037987102471 1 0.824427962303162 experiment 0.979240257950579 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOD ENSG00000173156 CDS Human protein_coding chr11:66834276 chr11:66834288 synonymous SNV . 0 33 hm5C_associated_SNPs_40123 0 0 0 0 2 Cytosol 1 0.500231876879776 0.351144075393676 0.999536246240449 hm5C_site_39397 DeepMRMD:0.351144075393676;iRNA_m5C:0.999536246240449 39398 chr18 56402450 56402450 1 + G T UCEC 56402451 + 56402431 56402471 41 AAGGTGTCAAGGAGCAGAAGCTTTTGAAATCCAGCATTCTG AAGGTGTCAAGGAGCAGAATCTTTTGAAATCCAGCATTCTG < 41bp 1 0.0547226177479675 1 0.0518769323825836 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MALT1 ENSG00000172175 CDS Human protein_coding chr18:56402451 chr18:56402450 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_40124 0 0 1 0 1 Nucleus 1 0.500231643934777 1 0.999536712130446 hm5C_site_39398 DeepMRMD:1;iRNA_m5C:0.999536712130446 39399 chr7 100334896 100334896 1 + G T UCEC 100334885 + 100334865 100334905 41 GTCCCCTTATCCTCTTGCAGCTGATGTTTGAGGGAACACGG GTCCCCTTATCCTCTTGCAGCTGATGTTTGATGGAACACGG < 41bp 1 0.198849514790593 1 0.151100128889084 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZAN ENSG00000146839 CDS Human protein_coding chr7:100334885 chr7:100334896 nonsynonymous SNV 0.698 2 32 hm5C_associated_SNPs_40125 0 0 0 0 2 cytosol 1 0.500231644131983 1 0.999536711736035 hm5C_site_39399 DeepMRMD:1;iRNA_m5C:0.999536711736035 39400 chr2 184023083 184023083 1 + G T UCEC 184023063 + 184023043 184023083 41 TTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAG TTATCAATCTAAACTGCAGGCTCGGAAAGCCTTAAGCAAAT < 41bp 1 0.652845846351919 1 0.162805795669556 experiment 0.694308307296162 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP35 ENSG00000163002 CDS Human protein_coding chr2:184023063 chr2:184023083 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_40126 0 0 1 0 2 chromatin 1 0.500231643920979 1 0.999536712158042 hm5C_site_39400 DeepMRMD:1;iRNA_m5C:0.999536712158042 39401 chr21 45523384 45523384 1 + A G UCEC 45523376 + 45523356 45523396 41 CAAGTCCTGGTCATCCCCAGCCAAGATGACCACGTCCTGGA CAAGTCCTGGTCATCCCCAGCCAAGATGGCCACGTCCTGGA < 41bp 1 0.205769162588129 1 0.472665041685104 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45523376 chr21:45523384 nonsynonymous SNV 0.995 3 29 hm5C_associated_SNPs_40127 0 0 1 0 0 Cytosol 1 0.500231643946608 1 0.999536712106785 hm5C_site_39401 DeepMRMD:1;iRNA_m5C:0.999536712106785 39402 chr9 139244094 139244094 1 + C T UCEC 139244104 + 139244084 139244124 41 AGCAGGGACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTA AGCAGGGACTTGCTACCCCTCCCCGTGAGGAGCAGGAAGTA < 41bp 1 0.360566617862079 1 0.243871301412582 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139244104 chr9:139244094 nonsynonymous SNV 0.563 1 11 hm5C_associated_SNPs_40128 0 0 0 0 1 Cytosol 1 0.500231643575179 1 0.999536712849642 hm5C_site_39402 DeepMRMD:1;iRNA_m5C:0.999536712849642 39403 chr16 8722759 8722759 1 + C T UCEC 8722770 + 8722750 8722790 41 CCTCCAGGCCGGGACTGACACCACTGGCCAGGAAGTGGCTG CCTCCAGGCTGGGACTGACACCACTGGCCAGGAAGTGGCTG < 41bp 1 0.298511673594301 1 0.0527163445949554 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL22 ENSG00000067365 CDS Human protein_coding chr16:8722770 chr16:8722759 nonsynonymous SNV . 0 10 hm5C_associated_SNPs_40129 0 0 1 0 0 Cytosol 1 0.500231643921105 1 0.99953671215779 hm5C_site_39403 DeepMRMD:1;iRNA_m5C:0.99953671215779 39404 chr6 41557796 41557796 1 + C T UCEC 41557781 + 41557761 41557801 41 TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGC TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCTGCAGC < 41bp 1 0.104260711400911 1 0.0252434313297272 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557781 chr6:41557796 synonymous SNV . 0 36 hm5C_associated_SNPs_40131 0 0 1 0 2 Nucleus 1 0.500231651770616 1 0.999536696458768 hm5C_site_39404 DeepMRMD:1;iRNA_m5C:0.999536696458768 39405 chr2 29159811 29159811 1 + T C UCEC 29159809 + 29159789 29159829 41 TTACAAAGAGGTTACAAGGACATCCTAATAGGTAAGATTAA TTACAAAGAGGTTACAAGGACACCCTAATAGGTAAGATTAA < 41bp 1 0.261662633692441 1 0.124296277761459 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 CDS Human protein_coding chr2:29159809 chr2:29159811 synonymous SNV . 0 23 hm5C_associated_SNPs_40132 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_39405 DeepMRMD:1;iRNA_m5C:0.999536712157814 39406 chr9 140110248 140110248 1 + G T UCEC 140110236 + 140110216 140110256 41 TCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAGACT TCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGTGCCAGACT < 41bp 1 0.301518292632173 1 0.101357489824295 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110236 chr9:140110248 nonsynonymous SNV 0.141 4 33 hm5C_associated_SNPs_40133 0 0 1 0 1 chromatin 1 0.500231643936924 1 0.999536712126152 hm5C_site_39406 DeepMRMD:1;iRNA_m5C:0.999536712126152 39407 chr1 29069431 29069431 1 + A G UCEC 29069427 + 29069407 29069447 41 TCTGCTGTTGGTAGCGGGTCCATTACTAGTAACATCGTGGC TCTGCTGTTGGTAGCGGGTCCATTGCTAGTAACATCGTGGC < 41bp 1 0.193172555232883 1 0.182891249656677 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29069427 chr1:29069431 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_40135 0 0 1 0 0 Cytosol 1 0.500231643921798 1 0.999536712156403 hm5C_site_39407 DeepMRMD:1;iRNA_m5C:0.999536712156403 39408 chr20 57246303 57246303 1 + T G UCEC 57246308 + 57246288 57246328 41 ATTGTACAGTCCATTTCTGACCTGAATGAAATATTCAGGGA ATTGTACAGTCCATTGCTGACCTGAATGAAATATTCAGGGA < 41bp 1 0.45662386186509 1 0.239635050296783 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control STX16 ENSG00000124222;ENSG00000254995 CDS Human other chr20:57246308 chr20:57246303 nonsynonymous SNV 0.991 0 16 hm5C_associated_SNPs_40136 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644609503 1 0.999536710780994 hm5C_site_39408 DeepMRMD:1;iRNA_m5C:0.999536710780994 39409 chr19 42397349 42397349 1 + A G UCEC 42397351 + 42397331 42397371 41 TCTTCCTCCTACAGACATACCATCTCTACCGACGAAGAAAA TCTTCCTCCTACAGACATGCCATCTCTACCGACGAAGAAAA < 41bp 1 0.0524307046500177 1 0.0263316929340363 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42397351 chr19:42397349 nonsynonymous SNV 0.982 5 19 hm5C_associated_SNPs_40137 0 0 1 0 2 Cytosol 1 0.500231644511504 1 0.999536710976992 hm5C_site_39409 DeepMRMD:1;iRNA_m5C:0.999536710976992 39410 chr7 73922436 73922436 1 + A G UCEC 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGCGCTGTGGCGTCCCCACCAACGGCTGCGGACC < 41bp 1 0.528574930707565 1 0.217045307159424 experiment 0.942850138584869 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922436 nonsynonymous SNV 0.996 4 17 hm5C_associated_SNPs_40138 0 0 1 0 2 Nucleus 1 0.500231685156206 1 0.999536629687588 hm5C_site_39410 DeepMRMD:1;iRNA_m5C:0.999536629687588 39411 chr12 105538143 105538143 1 + C T UCEC 105538149 + 105538129 105538169 41 TAAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAA TAAAGCTGGATGACTGAAACCCTTTCAAAGTTGGCATGAAA < 41bp 1 0.0333409146007592 1 0.0591758787631989 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538149 chr12:105538143 stopgain 0.999 1 15 hm5C_associated_SNPs_40139 0 0 1 0 2 unknown 1 0.500245831896502 1 0.999508336206997 hm5C_site_39411 DeepMRMD:1;iRNA_m5C:0.999508336206997 39412 chr12 105538143 105538143 1 + C T UCEC 105538150 + 105538130 105538170 41 AAAGCTGGATGACCGAAACCCTTTCAAAGTTGGCATGAAAG AAAGCTGGATGACTGAAACCCTTTCAAAGTTGGCATGAAAG < 41bp 1 0.0466591902117794 1 0.107293397188187 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105538150 chr12:105538143 stopgain 0.999 1 14 hm5C_associated_SNPs_40140 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_39412 DeepMRMD:1;iRNA_m5C:0.999536712157815 39413 chr1 36029495 36029495 1 + C A UCEC 36029505 + 36029485 36029525 41 GGCCCGGCTCCTTAGCACCTCTCCAGGTAAGAACTGGGGAT GGCCCGGCTCATTAGCACCTCTCCAGGTAAGAACTGGGGAT < 41bp 1 0.687778670576834 1 0.880232572555542 experiment 0.624442658846332 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36029505 chr1:36029495 nonsynonymous SNV 0.997 1 11 hm5C_associated_SNPs_40141 0 0 1 0 1 Endoplasmic reticulum 1 0.500231621359857 0.239534854888916 0.999536757280286 hm5C_site_39413 DeepMRMD:0.239534854888916;iRNA_m5C:0.999536757280286 39414 chr13 76415807 76415807 1 + G A UCEC 76415812 + 76415792 76415832 41 TGTCTCTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAA TGTCTCTGACCACACAGGAGCCCTCTCTTGCCACCTGGGAA < 41bp 1 0.0342147753913531 1 0.0317053198814392 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76415812 chr13:76415807 nonsynonymous SNV 0.888 1 16 hm5C_associated_SNPs_40142 0 0 1 0 1 Cytosol 1 0.500231643921671 1 0.999536712156659 hm5C_site_39414 DeepMRMD:1;iRNA_m5C:0.999536712156659 39415 chr13 76415807 76415807 1 + G A UCEC 76415814 + 76415794 76415834 41 TCTCTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAAGC TCTCTGACCACACAGGAGCCCTCTCTTGCCACCTGGGAAGC < 41bp 1 0.179581768525181 1 0.0847972333431244 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76415814 chr13:76415807 nonsynonymous SNV 0.888 1 14 hm5C_associated_SNPs_40143 0 0 1 0 1 Cytosol 1 0.500231643921117 1 0.999536712157767 hm5C_site_39415 DeepMRMD:1;iRNA_m5C:0.999536712157767 39416 chr20 60882682 60882682 1 + G A UCEC 60882662 + 60882642 60882682 41 CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCCCG CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCCCA < 41bp 1 0.321779065250465 1 0.704301416873932 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882662 chr20:60882682 synonymous SNV . 0 41 hm5C_associated_SNPs_40144 0 0 1 0 1 Ribosome 1 0.500231643921099 0.591397166252136 0.999536712157802 hm5C_site_39416 DeepMRMD:0.591397166252136;iRNA_m5C:0.999536712157802 39417 chrX 153688745 153688745 1 + C T UCEC 153688731 + 153688711 153688751 41 TGCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGC TGCGGGCCCATGTCACGGGGCCCGTCGAGGACAATGCTCGC < 41bp 1 0.0712971852185687 1 0.0389028489589691 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688731 chrX:153688745 synonymous SNV . 0 35 hm5C_associated_SNPs_40146 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643105632 1 0.999536713788736 hm5C_site_39417 DeepMRMD:1;iRNA_m5C:0.999536713788736 39418 chrX 153688745 153688745 1 + C T UCEC 153688732 + 153688712 153688752 41 GCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCT GCGGGCCCATGTCACGGGGCCCGTCGAGGACAATGCTCGCT < 41bp 1 0.0265131133455615 1 0.0412158370018005 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688732 chrX:153688745 synonymous SNV . 0 34 hm5C_associated_SNPs_40147 0 0 0 0 0 Endoplasmic reticulum 1 0.500231699393761 1 0.999536601212477 hm5C_site_39418 DeepMRMD:1;iRNA_m5C:0.999536601212477 39419 chrX 153688745 153688745 1 + C T UCEC 153688733 + 153688713 153688753 41 CGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCTG CGGGCCCATGTCACGGGGCCCGTCGAGGACAATGCTCGCTG < 41bp 1 0.262979008352597 1 0.0952673554420471 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688733 chrX:153688745 synonymous SNV . 0 33 hm5C_associated_SNPs_40148 0 0 0 0 0 Endoplasmic reticulum 1 0.500231640042438 1 0.999536719915124 hm5C_site_39419 DeepMRMD:1;iRNA_m5C:0.999536719915124 39420 chr1 45973913 45973913 1 + T C UCEC 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATCGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG < 41bp 1 0.232254992048628 1 0.0528044402599335 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973913 synonymous SNV . 0 5 hm5C_associated_SNPs_40149 0 0 0 1 1 Cytosol 1 0.500231643736304 1 0.999536712527392 hm5C_site_39420 DeepMRMD:1;iRNA_m5C:0.999536712527392 39421 chr15 42059336 42059336 1 + C T UCEC 42059348 + 42059328 42059368 41 TATAGCTGCCAAAGTTGGGTCAGTTGGACACAAAATGAACT TATAGCTGTCAAAGTTGGGTCAGTTGGACACAAAATGAACT < 41bp 1 0.0534308272011101 1 0.11468580365181 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42059348 chr15:42059336 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_40150 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39421 DeepMRMD:1;iRNA_m5C:0.999536712157815 39422 chr5 137523077 137523077 1 + C T UCEC 137523065 + 137523045 137523085 41 CCTACGCTCACGGCGTTCCCCTTTACTCAAATCTGGGCCTT CCTACGCTCACGGCGTTCCCCTTTACTCAAATTTGGGCCTT < 41bp 1 0.514766379649864 1 0.163413375616074 experiment 0.970467240700272 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF20A ENSG00000112984 CDS Human protein_coding chr5:137523065 chr5:137523077 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_40151 0 0 1 0 0 Nucleus 1 0.500231643924014 1 0.999536712151972 hm5C_site_39422 DeepMRMD:1;iRNA_m5C:0.999536712151972 39423 chr19 41078013 41078013 1 + G A UCEC 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCGGGAGCACACACAGTGGGG < 41bp 1 0.362916678170904 1 0.859188675880432 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078013 nonsynonymous SNV 0.835 0 35 hm5C_associated_SNPs_40152 0 0 0 0 2 cytosol 1 0.500231643854304 0.281622648239136 0.999536712291392 hm5C_site_39423 DeepMRMD:0.281622648239136;iRNA_m5C:0.999536712291392 39424 chr20 48568664 48568664 1 + A G UCEC 48568680 + 48568660 48568700 41 CTCCATCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCT CTCCGTCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCT < 41bp 1 0.671450001913245 1 0.37074202299118 experiment 0.65709999617351 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF114 ENSG00000124226 CDS Human protein_coding chr20:48568680 chr20:48568664 nonsynonymous SNV 0.996 0 5 hm5C_associated_SNPs_40153 0 0 1 1 1 Ribosome 1 0.500233739080114 1 0.999532521839772 hm5C_site_39424 DeepMRMD:1;iRNA_m5C:0.999532521839772 39425 chr9 131702890 131702890 1 + G T UCEC 131702887 + 131702867 131702907 41 TTGGCCTGCAGGTGGTGTGTCAAGAAGGATGGTCCGGGCCC TTGGCCTGCAGGTGGTGTGTCAATAAGGATGGTCCGGGCCC < 41bp 1 0.569634305249513 1 0.257389485836029 experiment 0.860731389500973 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control PHYHD1 ENSG00000175287 CDS Human protein_coding chr9:131702887 chr9:131702890 stopgain 0.995 4 24 hm5C_associated_SNPs_40154 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39425 DeepMRMD:1;iRNA_m5C:0.999536712157815 39426 chr15 40509810 40509810 1 + G A UCEC 40509796 + 40509776 40509816 41 GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGT GTGCAGCTGGATGTTTTTACCCTCAGCGGCTTTCAGACTGT < 41bp 1 0.319752448807852 1 0.212749838829041 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509796 chr15:40509810 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_40155 0 0 1 0 1 Nucleus 1 0.500231644920886 1 0.999536710158227 hm5C_site_39426 DeepMRMD:1;iRNA_m5C:0.999536710158227 39427 chr15 40509810 40509810 1 + G A UCEC 40509802 + 40509782 40509822 41 CTGGATGTTTTTACCCTCAGCGGCTTTCGGACTGTACAGAT CTGGATGTTTTTACCCTCAGCGGCTTTCAGACTGTACAGAT < 41bp 1 0.361868208402856 1 0.305477678775787 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BUB1B ENSG00000156970;ENSG00000259288 CDS Human other chr15:40509802 chr15:40509810 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_40156 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39427 DeepMRMD:1;iRNA_m5C:0.999536712157815 39428 chr3 153840115 153840115 1 + A G UCEC 153840113 + 153840093 153840133 41 CTCTCCTCGACTTCGACGGCCCAAGTCACCCAAGCTCCCCA CTCTCCTCGACTTCGACGGCCCGAGTCACCCAAGCTCCCCA < 41bp 1 0.328313293100302 1 0.190646588802338 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF26 ENSG00000114790 CDS Human protein_coding chr3:153840113 chr3:153840115 nonsynonymous SNV 0.988 1 23 hm5C_associated_SNPs_40157 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39428 DeepMRMD:1;iRNA_m5C:0.999536712157815 39429 chr17 7402796 7402796 1 + G A UCEC 7402808 + 7402788 7402828 41 AGAGAGACGTCTTCCTGGAGCGGGTGTGTGGTCCAAATGGA AGAGAGACATCTTCCTGGAGCGGGTGTGTGGTCCAAATGGA < 41bp 1 0.483407343890668 1 0.540839314460754 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7402808 chr17:7402796 nonsynonymous SNV 0.979 1 9 hm5C_associated_SNPs_40158 0 0 0 0 1 Nucleus 1 0.500231399246074 0.918321371078492 0.999537201507853 hm5C_site_39429 DeepMRMD:0.918321371078492;iRNA_m5C:0.999537201507853 39430 chr2 32656066 32656066 1 + A C UCEC 32656070 + 32656050 32656090 41 TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAA TAGAAGTTCAACAAGACCAGCAGCAAAGGAGGCATCCTCAA < 41bp 1 0.273154978141963 1 0.157524734735489 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656070 chr2:32656066 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_40159 0 0 1 0 1 Nucleus 1 0.500231643924586 1 0.999536712150827 hm5C_site_39430 DeepMRMD:1;iRNA_m5C:0.999536712150827 39431 chr12 57539112 57539112 1 + C T UCEC 57539127 + 57539107 57539147 41 GAGCACGCGGCAGACCACAGCCATGGACTTCAGCTATGCCA GAGCATGCGGCAGACCACAGCCATGGACTTCAGCTATGCCA < 41bp 1 0.0541123559388081 1 0.144732415676117 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57539127 chr12:57539112 nonsynonymous SNV 0.090 3 6 hm5C_associated_SNPs_40160 0 0 0 0 0 Exosome 1 0.500230781959547 1 0.999538436080905 hm5C_site_39431 DeepMRMD:1;iRNA_m5C:0.999538436080905 39432 chr7 142458446 142458446 1 + C A UCEC 142458431 + 142458411 142458451 41 GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGCTACAA GCCCCCTTTGATGATGATGACAAGATCGTTGGGGGATACAA < 41bp 1 0.653937025663904 1 0.449533343315125 experiment 0.692125948672192 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458431 chr7:142458446 synonymous SNV . 0 36 hm5C_associated_SNPs_40161 0 0 0 0 1 Cytosol 1 0.500231640449533 1 0.999536719100933 hm5C_site_39432 DeepMRMD:1;iRNA_m5C:0.999536719100933 39433 chr7 142458446 142458446 1 + C A UCEC 142458437 + 142458417 142458457 41 TTTGATGATGATGACAAGATCGTTGGGGGCTACAACTGTGA TTTGATGATGATGACAAGATCGTTGGGGGATACAACTGTGA < 41bp 1 0.206079932000342 1 0.147086322307587 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458437 chr7:142458446 synonymous SNV . 0 30 hm5C_associated_SNPs_40162 0 0 0 0 1 Cytosol 1 0.500231643925127 1 0.999536712149745 hm5C_site_39433 DeepMRMD:1;iRNA_m5C:0.999536712149745 39434 chr7 142458446 142458446 1 + C A UCEC 142458449 + 142458429 142458469 41 GACAAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGT GACAAGATCGTTGGGGGATACAACTGTGAGGAGAATTCTGT < 41bp 1 0.251516832151321 1 0.205217480659485 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458449 chr7:142458446 synonymous SNV . 0 18 hm5C_associated_SNPs_40163 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39434 DeepMRMD:1;iRNA_m5C:0.999536712157815 39435 chr7 142458446 142458446 1 + C A UCEC 142458452 + 142458432 142458472 41 AAGATCGTTGGGGGCTACAACTGTGAGGAGAATTCTGTCCC AAGATCGTTGGGGGATACAACTGTGAGGAGAATTCTGTCCC < 41bp 1 0.414537223993257 1 0.217180728912354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458452 chr7:142458446 synonymous SNV . 0 15 hm5C_associated_SNPs_40164 0 0 0 0 1 Cytosol 1 0.500231643928784 1 0.999536712142432 hm5C_site_39435 DeepMRMD:1;iRNA_m5C:0.999536712142432 39436 chr7 142458446 142458446 1 + C A UCEC 142458466 + 142458446 142458486 41 CTACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC ATACAACTGTGAGGAGAATTCTGTCCCCTACCAGGTGTCCC < 41bp 1 0.166548741451065 1 0.223908364772797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458466 chr7:142458446 synonymous SNV . 0 1 hm5C_associated_SNPs_40165 0 0 0 0 1 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_39436 DeepMRMD:1;iRNA_m5C:0.999536712157813 39437 chr16 845775 845775 1 + G T UCEC 845778 + 845758 845798 41 GCCGGGCCACGCCCCAGGCCCTGCTCCTCGATGCCCTCTGC GCCGGGCCACGCCCCAGTCCCTGCTCCTCGATGCCCTCTGC < 41bp 1 0.508197945536747 1 0.0778591632843018 experiment 0.983604108926506 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845778 chr16:845775 nonsynonymous SNV 0.073 0 18 hm5C_associated_SNPs_40166 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39437 DeepMRMD:1;iRNA_m5C:0.999536712157815 39438 chr1 109806826 109806826 1 + G A UCEC 109806832 + 109806812 109806852 41 CACTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCC CACTGGGAGCCAGCAGGGGGCCCGGCCATGCCATTCTGTCC < 41bp 1 0.146884713430121 1 0.118342369794846 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806832 chr1:109806826 nonsynonymous SNV 0.657 0 15 hm5C_associated_SNPs_40167 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_39438 DeepMRMD:1;iRNA_m5C:0.999536712157815 39439 chr1 109806826 109806826 1 + G A UCEC 109806833 + 109806813 109806853 41 ACTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCCT ACTGGGAGCCAGCAGGGGGCCCGGCCATGCCATTCTGTCCT < 41bp 1 0.142851712454983 1 0.0519925653934479 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806833 chr1:109806826 nonsynonymous SNV 0.657 0 14 hm5C_associated_SNPs_40168 0 0 0 0 0 Endoplasmic reticulum 1 0.50023162604402 1 0.99953674791196 hm5C_site_39439 DeepMRMD:1;iRNA_m5C:0.99953674791196 39440 chr1 109806826 109806826 1 + G A UCEC 109806834 + 109806814 109806854 41 CTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCCTT CTGGGAGCCAGCAGGGGGCCCGGCCATGCCATTCTGTCCTT < 41bp 1 0.252957752729115 1 0.100914627313614 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806834 chr1:109806826 nonsynonymous SNV 0.657 0 13 hm5C_associated_SNPs_40169 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921089 1 0.999536712157823 hm5C_site_39440 DeepMRMD:1;iRNA_m5C:0.999536712157823 39441 chr2 172602321 172602321 1 + G A UCEC 172602316 + 172602296 172602336 41 TTTTAAATGACTTTAGGTACCAACTGCCAGCATTTCTGTGG TTTTAAATGACTTTAGGTACCAACTACCAGCATTTCTGTGG < 41bp 1 0.451515654039114 1 0.0831904709339142 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DYNC1I2 ENSG00000077380 CDS Human protein_coding chr2:172602316 chr2:172602321 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_40170 0 0 0 0 1 Cytosol 1 0.50023164395671 1 0.99953671208658 hm5C_site_39441 DeepMRMD:1;iRNA_m5C:0.99953671208658 39442 chr5 71491696 71491696 1 + G T UCEC 71491699 + 71491679 71491719 41 CCTGAGGATCTAACCAAGGACTTTGAAGAGTTAAAGGCTGA CCTGAGGATCTAACCAATGACTTTGAAGAGTTAAAGGCTGA < 41bp 1 0.0869605550597178 1 0.134176045656204 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71491699 chr5:71491696 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_40171 0 0 1 0 0 Cytosol 1 0.500231644616219 1 0.999536710767561 hm5C_site_39442 DeepMRMD:1;iRNA_m5C:0.999536710767561 39443 chr7 4796677 4796677 1 + G A UCEC 4796673 + 4796653 4796693 41 ACCGTTACTTTATCAAAGTCCCACGTTCCCAGGAGGAGCCT ACCGTTACTTTATCAAAGTCCCACATTCCCAGGAGGAGCCT < 41bp 1 0.156235998057185 1 0.0429748892784119 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796673 chr7:4796677 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_40172 0 0 1 0 1 Endoplasmic reticulum 1 0.500231621756179 1 0.999536756487642 hm5C_site_39443 DeepMRMD:1;iRNA_m5C:0.999536756487642 39444 chr1 42925456 42925456 1 + C A UCEC 42925451 + 42925431 42925471 41 CTAATATCCTTGAGTCACGACAGTCCTTTGTGTTTATTGTA CTAATATCCTTGAGTCACGACAGTCATTTGTGTTTATTGTA < 41bp 1 0.0792299305147104 1 0.0510055124759674 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPCS ENSG00000127125 CDS Human protein_coding chr1:42925451 chr1:42925456 synonymous SNV . 0 26 hm5C_associated_SNPs_40173 0 0 1 0 0 Ribosome 1 0.500231643816225 1 0.999536712367551 hm5C_site_39444 DeepMRMD:1;iRNA_m5C:0.999536712367551 39445 chr19 56190086 56190086 1 + C T UCEC 56190096 + 56190076 56190116 41 CGAGCAATGACCCCTGGGGCCCATCCAGCTCCCTCATGTCA CGAGCAATGATCCCTGGGGCCCATCCAGCTCCCTCATGTCA < 41bp 1 0.0250841193953442 1 0.014331042766571 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPN1 ENSG00000063245 CDS Human protein_coding chr19:56190096 chr19:56190086 synonymous SNV . 0 11 hm5C_associated_SNPs_40174 0 0 1 0 0 chromatin 1 0.50023169689901 1 0.99953660620198 hm5C_site_39445 DeepMRMD:1;iRNA_m5C:0.99953660620198 39446 chr13 111290849 111290849 1 + G A UCEC 111290847 + 111290827 111290867 41 CATGATCGCCGAGGTGGGGGCCGCCTTCAGCAAGCTCTTTG CATGATCGCCGAGGTGGGGGCCACCTTCAGCAAGCTCTTTG < 41bp 1 0.205057168657156 1 0.154837101697922 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control NAXD ENSG00000213995 CDS Human protein_coding chr13:111290847 chr13:111290849 nonsynonymous SNV 0.027 2 23 hm5C_associated_SNPs_40175 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39446 DeepMRMD:1;iRNA_m5C:0.999536712157815 39447 chr4 148555336 148555336 1 + A G UCEC 148555322 + 148555302 148555342 41 GAAAACTTTATATTAAAGGACGGACAGTCAGGGGACATCCC GAAAACTTTATATTAAAGGACGGACAGTCAGGGGGCATCCC < 41bp 1 0.158031150842796 1 0.0805226266384125 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM184C ENSG00000164168 CDS Human protein_coding chr4:148555322 chr4:148555336 synonymous SNV . 0 35 hm5C_associated_SNPs_40176 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_39447 DeepMRMD:1;iRNA_m5C:0.999536712157815 39448 chr7 79842049 79842049 1 + C T UCEC 79842035 + 79842015 79842055 41 ATTTTTTTCTATTACAGAACCGAATGCATGAAAGCATGAAA ATTTTTTTCTATTACAGAACCGAATGCATGAAAGTATGAAA < 41bp 1 0.179835879595383 1 0.126738160848618 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842035 chr7:79842049 synonymous SNV . 0 35 hm5C_associated_SNPs_40177 0 0 0 0 1 Cytosol 1 0.500231812207106 1 0.999536375585789 hm5C_site_39448 DeepMRMD:1;iRNA_m5C:0.999536375585789 39449 chr2 201485942 201485942 1 + A G UCEC 201485944 + 201485924 201485964 41 CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGCGACAG CTTCTGCTTTTTTACTGAGGCTGAGAAATTTCTGGCGACAG < 41bp 1 0.382263541107757 1 0.192349910736084 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201485944 chr2:201485942 synonymous SNV . 0 19 hm5C_associated_SNPs_40178 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_39449 DeepMRMD:1;iRNA_m5C:0.999536712157814 39450 chr7 2472448 2472448 1 + G A UCEC 2472435 + 2472415 2472455 41 GCCGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCA GCCGCTGCCCACGCCCGGGCCGGACAGGGACAGAGAGCTCA < 41bp 1 0.402599866442069 1 0.116412699222565 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472435 chr7:2472448 synonymous SNV . 0 34 hm5C_associated_SNPs_40180 0 0 0 0 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39450 DeepMRMD:1;iRNA_m5C:0.999536712157815 39451 chr7 142459773 142459773 1 + G A UCEC 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATGACATCATGTTAATCAAGCTCTCCTCACGTACAGT < 41bp 1 0.450652284525041 1 0.643841505050659 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459773 nonsynonymous SNV 0.002 5 37 hm5C_associated_SNPs_40181 0 0 0 0 0 Cytosol 1 0.50023164400824 0.712316989898682 0.99953671198352 hm5C_site_39451 DeepMRMD:0.712316989898682;iRNA_m5C:0.99953671198352 39452 chr7 142459773 142459773 1 + G A UCEC 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATGACATCATGTTAATCAAGCTCTCCTCACGTACAGTAATC < 41bp 1 0.154569004380387 1 0.0542674660682678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459773 nonsynonymous SNV 0.002 5 33 hm5C_associated_SNPs_40182 0 0 0 0 0 Cytosol 1 0.500231673414595 1 0.999536653170809 hm5C_site_39452 DeepMRMD:1;iRNA_m5C:0.999536653170809 39453 chr7 142459773 142459773 1 + G A UCEC 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA GACATCATGTTAATCAAGCTCTCCTCACGTACAGTAATCAA < 41bp 1 0.473069532965754 1 0.240489542484283 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459773 nonsynonymous SNV 0.002 5 31 hm5C_associated_SNPs_40183 0 0 0 0 0 Cytosol 1 0.500231643921449 1 0.999536712157101 hm5C_site_39453 DeepMRMD:1;iRNA_m5C:0.999536712157101 39454 chr7 142459773 142459773 1 + G A UCEC 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG CATCATGTTAATCAAGCTCTCCTCACGTACAGTAATCAACG < 41bp 1 0.324247782352779 1 0.0898313820362091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459773 nonsynonymous SNV 0.002 5 29 hm5C_associated_SNPs_40184 0 0 0 0 0 Cytosol 1 0.500231645441697 1 0.999536709116607 hm5C_site_39454 DeepMRMD:1;iRNA_m5C:0.999536709116607 39455 chr7 142459773 142459773 1 + G A UCEC 142459766 + 142459746 142459786 41 ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC ATCATGTTAATCAAGCTCTCCTCACGTACAGTAATCAACGC < 41bp 1 0.360335020466192 1 0.171707302331924 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459766 chr7:142459773 nonsynonymous SNV 0.002 5 28 hm5C_associated_SNPs_40185 0 0 0 0 0 Cytosol 1 0.500231673045591 1 0.999536653908819 hm5C_site_39455 DeepMRMD:1;iRNA_m5C:0.999536653908819 39456 chr7 142459773 142459773 1 + G A UCEC 142459770 + 142459750 142459790 41 TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC TGTTAATCAAGCTCTCCTCACGTACAGTAATCAACGCCCGC < 41bp 1 0.192455766250955 1 0.0366343855857849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459770 chr7:142459773 nonsynonymous SNV 0.002 5 24 hm5C_associated_SNPs_40187 0 0 0 0 0 Cytosol 1 0.500231644225354 1 0.999536711549291 hm5C_site_39456 DeepMRMD:1;iRNA_m5C:0.999536711549291 39457 chr7 142459773 142459773 1 + G A UCEC 142459781 + 142459761 142459801 41 CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCAT CTCTCCTCACGTACAGTAATCAACGCCCGCGTGTCCACCAT < 41bp 1 0.637898523111762 1 0.761721968650818 experiment 0.724202953776477 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459781 chr7:142459773 nonsynonymous SNV 0.002 5 13 hm5C_associated_SNPs_40189 0 0 0 0 0 Cytosol 1 0.500231643921081 0.476556062698364 0.999536712157837 hm5C_site_39457 DeepMRMD:0.476556062698364;iRNA_m5C:0.999536712157837 39458 chr7 142459773 142459773 1 + G A UCEC 142459784 + 142459764 142459804 41 TCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTC TCCTCACGTACAGTAATCAACGCCCGCGTGTCCACCATCTC < 41bp 1 0.584765788339919 1 0.163712680339813 experiment 0.830468423320162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459784 chr7:142459773 nonsynonymous SNV 0.002 5 10 hm5C_associated_SNPs_40190 0 0 0 0 0 Cytosol 1 0.500231643920251 1 0.999536712159497 hm5C_site_39458 DeepMRMD:1;iRNA_m5C:0.999536712159497 39459 chr7 142459773 142459773 1 + G A UCEC 142459786 + 142459766 142459806 41 CTCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTC CTCACGTACAGTAATCAACGCCCGCGTGTCCACCATCTCTC < 41bp 1 0.488656374019377 1 0.0627740621566772 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459786 chr7:142459773 nonsynonymous SNV 0.002 5 8 hm5C_associated_SNPs_40191 0 0 0 0 0 Cytosol 1 0.500231644346899 1 0.999536711306201 hm5C_site_39459 DeepMRMD:1;iRNA_m5C:0.999536711306201 39460 chr7 142459773 142459773 1 + G A UCEC 142459787 + 142459767 142459807 41 TCACGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCT TCACGTACAGTAATCAACGCCCGCGTGTCCACCATCTCTCT < 41bp 1 0.540318204187701 1 0.0719607770442963 experiment 0.919363591624598 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459787 chr7:142459773 nonsynonymous SNV 0.002 5 7 hm5C_associated_SNPs_40192 0 0 0 0 0 Cytosol 1 0.500252367340825 1 0.99949526531835 hm5C_site_39460 DeepMRMD:1;iRNA_m5C:0.99949526531835 39461 chr7 142459773 142459773 1 + G A UCEC 142459790 + 142459770 142459810 41 CGTGCAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC CGTACAGTAATCAACGCCCGCGTGTCCACCATCTCTCTGCC < 41bp 1 0.450401347501981 1 0.104864954948425 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459790 chr7:142459773 nonsynonymous SNV 0.002 5 4 hm5C_associated_SNPs_40194 0 0 0 0 0 Cytosol 1 0.500231794284734 1 0.999536411430533 hm5C_site_39461 DeepMRMD:1;iRNA_m5C:0.999536411430533 39462 chr7 55259433 55259433 1 + C T UCEC 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTACTTGGAGGACTGTCGCTTGGTGCACCGCGA < 41bp 1 0.185186361130731 1 0.160867035388947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259433 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_40195 1 0 1 0 1 Nucleus 1 0.500231643921111 1 0.999536712157777 hm5C_site_39462 DeepMRMD:1;iRNA_m5C:0.999536712157777 not specified not specified 39463 chr6 159086550 159086550 1 + C T UCEC 159086565 + 159086545 159086585 41 GGCGCCGTGTGCCGGGGCTGCAGCCACCGCGTGTGTGCCCA GGCGCTGTGTGCCGGGGCTGCAGCCACCGCGTGTGTGCCCA < 41bp 1 0.635766399220072 1 0.547603607177734 experiment 0.728467201559855 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086565 chr6:159086550 synonymous SNV . 0 6 hm5C_associated_SNPs_40196 0 0 0 0 1 exosome 1 0.50023147981256 0.904792785644532 0.999537040374879 hm5C_site_39463 DeepMRMD:0.904792785644532;iRNA_m5C:0.999537040374879 39464 chr11 108151823 108151823 1 + C T UCEC 108151830 + 108151810 108151850 41 GTAGCCCTATCTGCGAAAAACAGGCTTTGTTTGCCCTGTGT GTAGCCCTATCTGTGAAAAACAGGCTTTGTTTGCCCTGTGT < 41bp 1 0.313389015226977 1 0.213575839996338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108151830 chr11:108151823 synonymous SNV . 0 14 hm5C_associated_SNPs_40197 3 0 1 0 1 Nucleus 1 0.500231644448377 1 0.999536711103246 hm5C_site_39464 DeepMRMD:1;iRNA_m5C:0.999536711103246 Hereditary cancer-predisposing syndrome Hereditary cancer-predisposing syndrome 39465 chr19 45261582 45261582 1 + T C UCEC 45261574 + 45261554 45261594 41 TCAGCGTCCGGCCGCGGGCTCCTCCCGCTGGTGCGCACGCT TCAGCGTCCGGCCGCGGGCTCCTCCCGCCGGTGCGCACGCT < 41bp 1 0.0537865900256328 1 0.179066091775894 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL3 ENSG00000069399 CDS Human protein_coding chr19:45261574 chr19:45261582 nonsynonymous SNV 0.997 3 29 hm5C_associated_SNPs_40198 0 0 0 0 1 chromatin 1 0.500228852569097 1 0.999542294861806 hm5C_site_39465 DeepMRMD:1;iRNA_m5C:0.999542294861806 39466 chr4 140265354 140265354 1 + G T UCEC 140265344 + 140265324 140265364 41 TTATATCCATATACAGACATCCCCTGACAAGGTGGATTATG TTATATCCATATACAGACATCCCCTGACAATGTGGATTATG < 41bp 1 0.0942845898234704 1 0.0443922877311707 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA15 ENSG00000164134 CDS Human protein_coding chr4:140265344 chr4:140265354 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_40199 0 0 1 0 1 Cytosol 1 0.500231643917297 1 0.999536712165406 hm5C_site_39466 DeepMRMD:1;iRNA_m5C:0.999536712165406 39467 chr5 150027970 150027970 1 + T C UCEC 150027987 + 150027967 150028007 41 CTGTCCCAAAACCGAGAGGCCCAGCAGTCCTCACCGGCCCC CTGCCCCAAAACCGAGAGGCCCAGCAGTCCTCACCGGCCCC < 41bp 1 0.125719266744463 1 0.0721442997455597 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SYNPO ENSG00000171992 CDS Human protein_coding chr5:150027987 chr5:150027970 nonsynonymous SNV 0.569 1 4 hm5C_associated_SNPs_40200 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643928801 1 0.999536712142398 hm5C_site_39467 DeepMRMD:1;iRNA_m5C:0.999536712142398 39468 chr14 100996331 100996331 1 + G A UCEC 100996330 + 100996310 100996350 41 TATCACCCCGTGCTGCCCTCCGTCCTCGCCACCTGCTCCTG TATCACCCCGTGCTGCCCTCCATCCTCGCCACCTGCTCCTG < 41bp 1 0.168362742760307 1 0.552078127861023 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100996330 chr14:100996331 nonsynonymous SNV 0.805 0 22 hm5C_associated_SNPs_40202 0 0 1 0 0 chromatin 1 0.500231643922799 0.895843744277954 0.999536712154403 hm5C_site_39468 DeepMRMD:0.895843744277954;iRNA_m5C:0.999536712154403 39469 chr14 68042642 68042642 1 + C T UCEC 68042632 + 68042612 68042652 41 GACTATGAGGCTGGAGGAACCAGACGGTTGCTTTCCTCCCA GACTATGAGGCTGGAGGAACCAGACGGTTGTTTTCCTCCCA < 41bp 1 0.561099471841186 1 0.833063781261444 experiment 0.877801056317628 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68042632 chr14:68042642 nonsynonymous SNV 0.899 2 31 hm5C_associated_SNPs_40203 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920121 0.333872437477112 0.999536712159759 hm5C_site_39469 DeepMRMD:0.333872437477112;iRNA_m5C:0.999536712159759 39470 chrX 49853367 49853367 1 + C A UCEC 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CATCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC < 41bp 1 0.140045691911279 1 0.173361390829086 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853367 nonsynonymous SNV 0.999 4 2 hm5C_associated_SNPs_40204 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39470 DeepMRMD:1;iRNA_m5C:0.999536712157815 39471 chr17 73058324 73058324 1 + C T UCEC 73058313 + 73058293 73058333 41 AATAATTCTACCAATGGCATCGTCATAGAGCCGAGCGAAAA AATAATTCTACCAATGGCATCGTCATAGAGCTGAGCGAAAA < 41bp 1 0.371084797992849 1 0.400296121835709 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058313 chr17:73058324 nonsynonymous SNV 0.991 1 32 hm5C_associated_SNPs_40205 0 0 0 0 1 Cytosol 1 0.500230134683569 1 0.999539730632862 hm5C_site_39471 DeepMRMD:1;iRNA_m5C:0.999539730632862 39472 chr7 148978924 148978924 1 + G T UCEC 148978930 + 148978910 148978950 41 GAGGAGGGGCGGCAGGAGGCCCCCGGCCGCTCGCCCACCAG GAGGAGGGGCGGCATGAGGCCCCCGGCCGCTCGCCCACCAG < 41bp 1 0.463816764221595 1 0.543089270591736 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148978930 chr7:148978924 nonsynonymous SNV 0.016 0 15 hm5C_associated_SNPs_40206 0 0 1 0 0 chromatin 1 0.500231643921092 0.913821458816528 0.999536712157815 hm5C_site_39472 DeepMRMD:0.913821458816528;iRNA_m5C:0.999536712157815 39473 chr7 148978924 148978924 1 + G T UCEC 148978931 + 148978911 148978951 41 AGGAGGGGCGGCAGGAGGCCCCCGGCCGCTCGCCCACCAGC AGGAGGGGCGGCATGAGGCCCCCGGCCGCTCGCCCACCAGC < 41bp 1 0.464671842602643 1 0.567603349685669 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148978931 chr7:148978924 nonsynonymous SNV 0.016 0 14 hm5C_associated_SNPs_40207 0 0 1 0 0 chromatin 1 0.500231783740459 0.864793300628662 0.999536432519082 hm5C_site_39473 DeepMRMD:0.864793300628662;iRNA_m5C:0.999536432519082 39474 chr19 50902136 50902136 1 + G T UCEC 50902140 + 50902120 50902160 41 GCGGCGGCCAGGCCCAGGGCCCGGGGTGCCCCCAAAGCGGG GCGGCGGCCAGGCCCATGGCCCGGGGTGCCCCCAAAGCGGG < 41bp 1 0.595563653966497 1 0.814493417739868 experiment 0.808872692067007 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902140 chr19:50902136 nonsynonymous SNV 0.988 1 17 hm5C_associated_SNPs_40208 0 0 1 0 1 Nucleus 1 0.500231643921092 0.371013164520264 0.999536712157815 hm5C_site_39474 DeepMRMD:0.371013164520264;iRNA_m5C:0.999536712157815 39475 chr19 1979220 1979220 1 + C T UCEC 1979211 + 1979191 1979231 41 CTGGGCCACATGTTCATGTACTTCCTGCGCGGCAGCCTCCC CTGGGCCACATGTTCATGTACTTCCTGCGTGGCAGCCTCCC < 41bp 1 0.111365431891216 1 0.0201103091239929 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979211 chr19:1979220 synonymous SNV . 0 30 hm5C_associated_SNPs_40210 0 0 1 0 2 Ribosome 1 0.500231643921111 1 0.999536712157778 hm5C_site_39475 DeepMRMD:1;iRNA_m5C:0.999536712157778 39476 chr11 6414510 6414510 1 + T G UCEC 6414500 + 6414480 6414520 41 GGTCTCCGCCTCATCTCTCTCAATATGAATTTTTGTTCCCG GGTCTCCGCCTCATCTCTCTCAATATGAATGTTTGTTCCCG < 41bp 1 0.497050983086358 1 0.69918692111969 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6414500 chr11:6414510 nonsynonymous SNV 1.000 5 31 hm5C_associated_SNPs_40211 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.60162615776062 0.999536712157815 hm5C_site_39476 DeepMRMD:0.60162615776062;iRNA_m5C:0.999536712157815 39477 chr4 146468000 146468000 1 + C T UCEC 146468006 + 146467986 146468026 41 TCCAACAATAAGAACCGTTTCTGCCTTGGGCTGCTCTCCAA TCCAACAATAAGAATCGTTTCTGCCTTGGGCTGCTCTCCAA < 41bp 1 0.692141253490398 1 0.108575791120529 experiment 0.615717493019205 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146468006 chr4:146468000 synonymous SNV . 0 15 hm5C_associated_SNPs_40212 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921544 1 0.999536712156912 hm5C_site_39477 DeepMRMD:1;iRNA_m5C:0.999536712156912 39478 chr19 806424 806424 1 + C T UCEC 806441 + 806421 806461 41 GAACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG GAATGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGG < 41bp 1 0.295758610182719 1 0.0476390421390533 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806441 chr19:806424 synonymous SNV . 0 4 hm5C_associated_SNPs_40213 0 0 1 0 1 Cytosol 1 0.500241886266179 1 0.999516227467642 hm5C_site_39478 DeepMRMD:1;iRNA_m5C:0.999516227467642 39479 chr19 806424 806424 1 + C T UCEC 806442 + 806422 806462 41 AACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC AATGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGC < 41bp 1 0.391156319747496 1 0.124287933111191 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806442 chr19:806424 synonymous SNV . 0 3 hm5C_associated_SNPs_40214 0 0 1 0 1 Cytosol 1 0.500231595843541 1 0.999536808312918 hm5C_site_39479 DeepMRMD:1;iRNA_m5C:0.999536808312918 39480 chr19 806424 806424 1 + C T UCEC 806443 + 806423 806463 41 ACGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG ATGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCG < 41bp 1 0.413243405122501 1 0.0302070677280426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806443 chr19:806424 synonymous SNV . 0 2 hm5C_associated_SNPs_40215 0 0 1 0 1 Cytosol 1 0.500249267735423 1 0.999501464529154 hm5C_site_39480 DeepMRMD:1;iRNA_m5C:0.999501464529154 39481 chr19 806424 806424 1 + C T UCEC 806444 + 806424 806464 41 CGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG TGTCCACGGCGCCCTGGCCCCCCTGGCCATCCCCTCGGCGG < 41bp 1 0.523884558041383 1 0.164771974086761 experiment 0.952230883917234 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806444 chr19:806424 synonymous SNV . 0 1 hm5C_associated_SNPs_40216 0 0 1 0 1 Cytosol 1 0.500231658481087 1 0.999536683037827 hm5C_site_39481 DeepMRMD:1;iRNA_m5C:0.999536683037827 39482 chrX 153696537 153696537 1 + C T UCEC 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCGTGCTCTTCCCGGGCATTGAGGCCCACCCG < 41bp 1 0.61000643940616 1 0.894956469535828 experiment 0.77998712118768 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696537 synonymous SNV . 0 29 hm5C_associated_SNPs_40217 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164601632 0.210087060928344 0.999536707967361 hm5C_site_39482 DeepMRMD:0.210087060928344;iRNA_m5C:0.999536707967361 39483 chr8 25167994 25167994 1 + G A UCEC 25168004 + 25167984 25168024 41 ACACTTGGTTGATAGATCAACAGCAATAGCCCGGAAGATGG ACACTTGGTTAATAGATCAACAGCAATAGCCCGGAAGATGG < 41bp 1 0.53920304784823 1 0.200846642255783 experiment 0.921593904303541 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25168004 chr8:25167994 nonsynonymous SNV 0.997 1 11 hm5C_associated_SNPs_40218 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39483 DeepMRMD:1;iRNA_m5C:0.999536712157815 39484 chr5 159344772 159344772 1 + C T UCEC 159344770 + 159344750 159344790 41 GCTGTCAAACTTTTTAAGTTCTCCAGGGAAAAGAAAGCAGC GCTGTCAAACTTTTTAAGTTCTTCAGGGAAAAGAAAGCAGC < 41bp 1 0.321348260067176 1 0.682891249656677 experiment 1 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout ADRA1B ENSG00000170214 CDS Human protein_coding chr5:159344770 chr5:159344772 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_40219 0 0 0 0 1 exosome 1 0.50023164425945 0.634217500686646 0.9995367114811 hm5C_site_39484 DeepMRMD:0.634217500686646;iRNA_m5C:0.9995367114811 39485 chr17 52991186 52991186 1 + C T UCEC 52991196 + 52991176 52991216 41 TTAAGAAAGGCGTTCAGTTTCCTCCCTCAGAAGCAGAGGCT TTAAGAAAGGTGTTCAGTTTCCTCCCTCAGAAGCAGAGGCT < 41bp 1 0.167171627837374 1 0.0526689291000366 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52991196 chr17:52991186 synonymous SNV . 0 11 hm5C_associated_SNPs_40220 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39485 DeepMRMD:1;iRNA_m5C:0.999536712157815 39486 chr4 79396727 79396727 1 + T C UCEC 79396708 + 79396688 79396728 41 AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCTG AGGCACCGCCAGCTCCAGCTCCAGGGTCAGCTCCCAACCCG < 41bp 1 0.38453419310433 1 0.930269420146942 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79396708 chr4:79396727 synonymous SNV . 0 40 hm5C_associated_SNPs_40221 0 0 0 0 1 Nucleus 1 0.500231643921092 0.139461159706116 0.999536712157815 hm5C_site_39486 DeepMRMD:0.139461159706116;iRNA_m5C:0.999536712157815 39487 chr16 88498806 88498806 1 + C A UCEC 88498824 + 88498804 88498844 41 GGCTGTGGCCACCGTGGAAGCGGTTCAGGGGAGGCCTGGGG GGATGTGGCCACCGTGGAAGCGGTTCAGGGGAGGCCTGGGG < 41bp 1 0.224005974070601 1 0.508887708187103 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88498824 chr16:88498806 nonsynonymous SNV 0.000 0 3 hm5C_associated_SNPs_40222 0 0 0 0 0 exosome 1 0.500231643921092 0.982224583625794 0.999536712157815 hm5C_site_39487 DeepMRMD:0.982224583625794;iRNA_m5C:0.999536712157815 39488 chr16 24834981 24834981 1 + C T UCEC 24835001 + 24834981 24835021 41 CGGCACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCC TGGCACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCC < 41bp 1 0.1159576035053 1 0.0679369568824768 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835001 chr16:24834981 synonymous SNV . 0 1 hm5C_associated_SNPs_40223 0 0 1 0 0 Nucleus 1 0.500231643916531 1 0.999536712166939 hm5C_site_39488 DeepMRMD:1;iRNA_m5C:0.999536712166939 39489 chr1 156883205 156883205 1 + G A UCEC 156883191 + 156883171 156883211 41 GTCCCCTCTTAGGTTCCAGGCCCGCTCTTTGCCAGCCTGCA GTCCCCTCTTAGGTTCCAGGCCCGCTCTTTGCCAACCTGCA < 41bp 1 0.0881678765522927 1 0.0374262630939484 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883191 chr1:156883205 nonsynonymous SNV 0.850 1 35 hm5C_associated_SNPs_40224 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39489 DeepMRMD:1;iRNA_m5C:0.999536712157815 39490 chr19 36213611 36213611 1 + G A UCEC 36213602 + 36213582 36213622 41 CCCTCCCTCTCCGGGATCGGCAGGACCTCGCCACAGAGGGT CCCTCCCTCTCCGGGATCGGCAGGACCTCACCACAGAGGGT < 41bp 1 0.522064357696259 1 0.695666134357452 experiment 0.955871284607482 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36213602 chr19:36213611 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_40225 0 0 1 0 0 chromatin 1 0.500231643797055 0.608667731285096 0.99953671240589 hm5C_site_39490 DeepMRMD:0.608667731285096;iRNA_m5C:0.99953671240589 39491 chr16 2816051 2816051 1 + G A UCEC 2816031 + 2816011 2816051 41 CAGGAAAGTTCCCGGACCTCCTCTCGACGCCGAAGAGGCCG CAGGAAAGTTCCCGGACCTCCTCTCGACGCCGAAGAGGCCA < 41bp 1 0.127722741203357 1 0.399181306362152 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816031 chr16:2816051 nonsynonymous SNV 0.996 3 41 hm5C_associated_SNPs_40226 0 0 1 0 0 Nucleus 1 0.500231648342333 1 0.999536703315334 hm5C_site_39491 DeepMRMD:1;iRNA_m5C:0.999536703315334 39492 chr16 2816051 2816051 1 + G A UCEC 2816050 + 2816030 2816070 41 CCTCTCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACC CCTCTCGACGCCGAAGAGGCCACTCTCGGACACCCCCAACC < 41bp 1 0.145250499799296 1 0.04937344789505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816050 chr16:2816051 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_40227 0 0 1 0 0 Nucleus 1 0.500232027570586 1 0.999535944858829 hm5C_site_39492 DeepMRMD:1;iRNA_m5C:0.999535944858829 39493 chr16 2816051 2816051 1 + G A UCEC 2816052 + 2816032 2816072 41 TCTCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACCAG TCTCGACGCCGAAGAGGCCACTCTCGGACACCCCCAACCAG < 41bp 1 0.225988002845324 1 0.130268305540085 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816052 chr16:2816051 nonsynonymous SNV 0.996 3 20 hm5C_associated_SNPs_40228 0 0 1 0 0 Nucleus 1 0.500231643933635 1 0.999536712132731 hm5C_site_39493 DeepMRMD:1;iRNA_m5C:0.999536712132731 39494 chr11 66512362 66512362 1 + T C UCEC 66512342 + 66512322 66512362 41 TACCCTTCGACTGGGCGTTGCCGCTGTTCCCTGCGCGGCAT TACCCTTCGACTGGGCGTTGCCGCTGTTCCCTGCGCGGCAC < 41bp 1 0.556767056048728 1 0.354421555995941 experiment 0.886465887902544 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66512342 chr11:66512362 nonsynonymous SNV 0.738 0 41 hm5C_associated_SNPs_40229 0 0 1 0 1 Endoplasmic reticulum 1 0.500231760077563 1 0.999536479844875 hm5C_site_39494 DeepMRMD:1;iRNA_m5C:0.999536479844875 39495 chr10 81036965 81036965 1 + T C UCEC 81036966 + 81036946 81036986 41 TCCTCCTGGTGCGAAGAGCTCGGCCGCCTGCTGCTGCTCCG TCCTCCTGGTGCGAAGAGCCCGGCCGCCTGCTGCTGCTCCG < 41bp 1 0.46459988051746 1 0.398616135120392 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:81036966 chr10:81036965 nonsynonymous SNV 0.836 3 20 hm5C_associated_SNPs_40230 0 0 1 0 0 Nucleus 1 0.500231652068818 1 0.999536695862365 hm5C_site_39495 DeepMRMD:1;iRNA_m5C:0.999536695862365 39496 chr6 33411310 33411310 1 + A C UCEC 33411295 + 33411275 33411315 41 TAGCAAGAGTGAGGACCTCTCTTCCGGGGTCCCCAAGCCCC TAGCAAGAGTGAGGACCTCTCTTCCGGGGTCCCCACGCCCC < 41bp 1 0.221024016074505 1 0.365967869758606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33411295 chr6:33411310 nonsynonymous SNV 0.998 1 36 hm5C_associated_SNPs_40231 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39496 DeepMRMD:1;iRNA_m5C:0.999536712157815 39497 chr6 44218106 44218106 1 + G T UCEC 44218121 + 44218101 44218141 41 ATAAAGATGATGAAGAAAAACCCAAGATCGAAGATGTGGGT ATAAATATGATGAAGAAAAACCCAAGATCGAAGATGTGGGT < 41bp 1 0.531325645877795 1 0.189257353544235 experiment 0.93734870824441 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218121 chr6:44218106 nonsynonymous SNV 0.990 1 6 hm5C_associated_SNPs_40232 0 0 1 0 1 Nucleus 1 0.500231649603669 1 0.999536700792662 hm5C_site_39497 DeepMRMD:1;iRNA_m5C:0.999536700792662 39498 chr1 228403517 228403517 1 + G T UCEC 228403511 + 228403491 228403531 41 GCCAACGGCATTGAGAGCAGCATCCGGATGGAGGTCCGGGG GCCAACGGCATTGAGAGCAGCATCCGTATGGAGGTCCGGGG < 41bp 1 0.0495537979464024 1 0.106544762849808 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228403511 chr1:228403517 synonymous SNV . 0 27 hm5C_associated_SNPs_40233 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39498 DeepMRMD:1;iRNA_m5C:0.999536712157815 39499 chr1 228403517 228403517 1 + G T UCEC 228403514 + 228403494 228403534 41 AACGGCATTGAGAGCAGCATCCGGATGGAGGTCCGGGGTAG AACGGCATTGAGAGCAGCATCCGTATGGAGGTCCGGGGTAG < 41bp 1 0.0860475299291872 1 0.0946514010429382 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OBSCN ENSG00000154358 CDS Human protein_coding chr1:228403514 chr1:228403517 synonymous SNV . 0 24 hm5C_associated_SNPs_40234 0 0 0 0 1 Ribosome 1 0.500232176229987 1 0.999535647540025 hm5C_site_39499 DeepMRMD:1;iRNA_m5C:0.999535647540025 39500 chr19 39915614 39915614 1 + C A UCEC 39915618 + 39915598 39915638 41 TGCCCTCTCCAGATACCTGGCAGCCTCATATATCAGCCAGA TGCCCTCTCCAGATACATGGCAGCCTCATATATCAGCCAGA < 41bp 1 0.169103332295222 1 0.0860939025878906 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39915618 chr19:39915614 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_40235 0 0 0 0 0 Nucleus 1 0.50023164392114 1 0.999536712157721 hm5C_site_39500 DeepMRMD:1;iRNA_m5C:0.999536712157721 39501 chrX 70519853 70519853 1 + G A UCEC 70519864 + 70519844 70519884 41 GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGCAGCT GGGCAATTGATGGAACTCCTCCTGCATTCAACCGTGCAGCT < 41bp 1 0.197451928475073 1 0.186262547969818 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70519864 chrX:70519853 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_40236 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_39501 DeepMRMD:1;iRNA_m5C:0.999536712157814 39502 chr19 1278948 1278948 1 + G A UCEC 1278943 + 1278923 1278963 41 CCTTTTGGAACCTGCACAGCCCGCCGACCTGTTGCCACCTG CCTTTTGGAACCTGCACAGCCCGCCAACCTGTTGCCACCTG < 41bp 1 0.386667782264362 1 0.250647068023682 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control C19orf24 ENSG00000228300 CDS Human protein_coding chr19:1278943 chr19:1278948 nonsynonymous SNV 0.000 0 26 hm5C_associated_SNPs_40237 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39502 DeepMRMD:1;iRNA_m5C:0.999536712157815 39503 chr16 78143686 78143686 1 + G A UCEC 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATACAGATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.337417413440458 1 0.428309142589569 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143686 nonsynonymous SNV 0.977 4 12 hm5C_associated_SNPs_40239 0 0 1 0 2 Ribosome 1 0.500231643928814 1 0.999536712142371 hm5C_site_39503 DeepMRMD:1;iRNA_m5C:0.999536712142371 39504 chr13 88329297 88329297 1 + C T UCEC 88329294 + 88329274 88329314 41 CAGTGAGTGGAGTTTTGGACCAGCTGAAGTCACTCATCCAA CAGTGAGTGGAGTTTTGGACCAGTTGAAGTCACTCATCCAA < 41bp 1 0.327201151146461 1 0.512624859809875 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88329294 chr13:88329297 synonymous SNV . 0 24 hm5C_associated_SNPs_40240 0 0 1 0 0 nucleus 1 0.500231643921093 0.97475028038025 0.999536712157814 hm5C_site_39504 DeepMRMD:0.97475028038025;iRNA_m5C:0.999536712157814 39505 chr20 37078028 37078028 1 + T A UCEC 37078022 + 37078002 37078042 41 CCCTTGTATACACCTGCATTCAAAAATGATCACGGGCTGCC CCCTTGTATACACCTGCATTCAAAAAAGATCACGGGCTGCC < 41bp 1 0.477942062095443 1 0.397783815860748 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA60 ENSG00000199266 ncRNA_exonic Human snoRNA chr20:37078022 chr20:37078028 . . 0 27 hm5C_associated_SNPs_40241 0 0 1 0 0 unknown 1 0.500231643910264 1 0.999536712179471 hm5C_site_39505 DeepMRMD:1;iRNA_m5C:0.999536712179471 39506 chr20 37078028 37078028 1 + T A UCEC 37078038 + 37078018 37078058 41 CATTCAAAAATGATCACGGGCTGCCTGTGCTCTGGTCATCA CATTCAAAAAAGATCACGGGCTGCCTGTGCTCTGGTCATCA < 41bp 1 0.165212576693727 1 0.0287185609340668 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA60 ENSG00000199266 ncRNA_exonic Human snoRNA chr20:37078038 chr20:37078028 . . 0 11 hm5C_associated_SNPs_40242 0 0 1 0 0 unknown 1 0.500231644009385 1 0.99953671198123 hm5C_site_39506 DeepMRMD:1;iRNA_m5C:0.99953671198123 39507 chr20 37078028 37078028 1 + T A UCEC 37078042 + 37078022 37078062 41 CAAAAATGATCACGGGCTGCCTGTGCTCTGGTCATCAATAA CAAAAAAGATCACGGGCTGCCTGTGCTCTGGTCATCAATAA < 41bp 1 0.424961850423983 1 0.3985276222229 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA60 ENSG00000199266 ncRNA_exonic Human snoRNA chr20:37078042 chr20:37078028 . . 0 7 hm5C_associated_SNPs_40243 0 0 1 0 0 unknown 1 0.500231643921319 1 0.999536712157362 hm5C_site_39507 DeepMRMD:1;iRNA_m5C:0.999536712157362 39508 chr19 7528745 7528745 1 + G T UCEC 7528733 + 7528713 7528753 41 TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCGCCAACGGC TCCAGAGCCTGATCTGCAGGCAGCTGGGCAGCTCCAACGGC < 41bp 1 0.381435524783002 1 0.453789710998535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528733 chr19:7528745 nonsynonymous SNV 0.025 0 33 hm5C_associated_SNPs_40245 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39508 DeepMRMD:1;iRNA_m5C:0.999536712157815 39509 chr3 57294018 57294018 1 + G A UCEC 57294032 + 57294012 57294052 41 AGAATCGCATTTATTAGTCACTTGTGACTGTTTAAAGTAAG AGAATCACATTTATTAGTCACTTGTGACTGTTTAAAGTAAG < 41bp 1 0.130995483940352 1 0.0660634934902191 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APPL1 ENSG00000157500 CDS Human protein_coding chr3:57294032 chr3:57294018 synonymous SNV . 0 7 hm5C_associated_SNPs_40247 0 0 1 0 1 Cytosol 1 0.500231644064808 1 0.999536711870383 hm5C_site_39509 DeepMRMD:1;iRNA_m5C:0.999536711870383 39510 chr20 39793976 39793976 1 + G A UCEC 39793996 + 39793976 39794016 41 GCATCCTCTACCTGGAGGACCCTGTGAACCACGTGAGGACT ACATCCTCTACCTGGAGGACCCTGTGAACCACGTGAGGACT < 41bp 1 0.0535400838210083 1 0.122837662696838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39793996 chr20:39793976 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_40248 0 0 1 0 2 Cytosol 1 0.500231685201494 1 0.999536629597013 hm5C_site_39510 DeepMRMD:1;iRNA_m5C:0.999536629597013 39511 chr17 38609317 38609317 1 + G A UCEC 38609301 + 38609281 38609321 41 AGCGCCCATGACCGCAGGTGCCTGCAGAAGCACTTCGCCAA AGCGCCCATGACCGCAGGTGCCTGCAGAAGCACTTCACCAA < 41bp 1 0.0966843673439178 1 0.119398534297943 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38609301 chr17:38609317 nonsynonymous SNV 0.751 0 37 hm5C_associated_SNPs_40249 0 0 1 0 2 Nucleus 1 0.500231643537544 1 0.999536712924913 hm5C_site_39511 DeepMRMD:1;iRNA_m5C:0.999536712924913 39512 chr1 33745922 33745922 1 + G A UCEC 33745921 + 33745901 33745941 41 ATCAAGACAATCCAGGGCCACGGCCTGCTTGGCCCCCCCAA ATCAAGACAATCCAGGGCCACAGCCTGCTTGGCCCCCCCAA < 41bp 1 0.438460527861923 1 0.490646868944168 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33745921 chr1:33745922 nonsynonymous SNV 0.984 0 22 hm5C_associated_SNPs_40250 0 0 1 0 0 Nucleus 1 0.500231643920961 1 0.999536712158078 hm5C_site_39512 DeepMRMD:1;iRNA_m5C:0.999536712158078 39513 chr2 228148532 228148532 1 + T C UCEC 228148543 + 228148523 228148563 41 CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAG CATTGGCCCCCCAGGGCCCCCTGGGAACCCAGGCACACCAG < 41bp 1 0.656019360680536 1 0.561778366565704 experiment 0.687961278638929 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148543 chr2:228148532 synonymous SNV . 0 10 hm5C_associated_SNPs_40251 0 0 0 0 2 nucleus 1 0.500231643921092 0.876443266868592 0.999536712157815 hm5C_site_39513 DeepMRMD:0.876443266868592;iRNA_m5C:0.999536712157815 39514 chr11 47600880 47600880 1 + A G UCEC 47600875 + 47600855 47600895 41 GAGGCGGGAGAGCGCCGGGGCCGACACGCGCCGTGAGTATG GAGGCGGGAGAGCGCCGGGGCCGACGCGCGCCGTGAGTATG < 41bp 1 0.12738662888272 1 0.111426562070847 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600875 chr11:47600880 nonsynonymous SNV 0.995 0 26 hm5C_associated_SNPs_40252 0 0 1 0 2 Ribosome 1 0.500231644027509 1 0.999536711944983 hm5C_site_39514 DeepMRMD:1;iRNA_m5C:0.999536711944983 39515 chr11 47600880 47600880 1 + A G UCEC 47600885 + 47600865 47600905 41 AGCGCCGGGGCCGACACGCGCCGTGAGTATGTGCGGGCAGC AGCGCCGGGGCCGACGCGCGCCGTGAGTATGTGCGGGCAGC < 41bp 1 0.273288574884511 1 0.172491788864136 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47600885 chr11:47600880 nonsynonymous SNV 0.995 0 16 hm5C_associated_SNPs_40254 0 0 1 0 2 Ribosome 1 0.500231643921936 1 0.999536712156129 hm5C_site_39515 DeepMRMD:1;iRNA_m5C:0.999536712156129 39516 chr16 628387 628387 1 + C T UCEC 628379 + 628359 628399 41 TGGCCCCTGTGTCCCTGCAGCACGTGGCCGAGGAGCTCCAG TGGCCCCTGTGTCCCTGCAGCACGTGGCTGAGGAGCTCCAG < 41bp 1 0.396093135589358 1 0.319692820310593 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:628379 chr16:628387 synonymous SNV . 0 29 hm5C_associated_SNPs_40257 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_39516 DeepMRMD:1;iRNA_m5C:0.999536712157816 39517 chr9 100405542 100405542 1 + A G UCEC 100405545 + 100405525 100405565 41 ATTAGTTGGACTACTGAATGCCAGGAATTACAATTTTGGTG ATTAGTTGGACTACTGAGTGCCAGGAATTACAATTTTGGTG < 41bp 1 0.261614222181113 1 0.445479840040207 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100405545 chr9:100405542 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_40258 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_39517 DeepMRMD:1;iRNA_m5C:0.999536712157816 39518 chr20 61450582 61450582 1 + G T UCEC 61450587 + 61450567 61450607 41 TGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAAC TGCACAGGGACCAAATGGGGCCCCAGGAAAGCCGGGGAAAC < 41bp 1 0.347075885706104 1 0.0726353824138641 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450587 chr20:61450582 nonsynonymous SNV 0.979 1 16 hm5C_associated_SNPs_40259 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39518 DeepMRMD:1;iRNA_m5C:0.999536712157815 39519 chr20 61450582 61450582 1 + G T UCEC 61450588 + 61450568 61450608 41 GCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGGAAACC GCACAGGGACCAAATGGGGCCCCAGGAAAGCCGGGGAAACC < 41bp 1 0.184780004599031 1 0.171294838190079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450588 chr20:61450582 nonsynonymous SNV 0.979 1 15 hm5C_associated_SNPs_40260 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39519 DeepMRMD:1;iRNA_m5C:0.999536712157815 39520 chr19 2810303 2810303 1 + C T UCEC 2810285 + 2810265 2810305 41 GACCTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCGG GACCTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGTGG < 41bp 1 0.203173930995712 1 0.513234198093414 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control THOP1 ENSG00000172009 CDS Human protein_coding chr19:2810285 chr19:2810303 nonsynonymous SNV 0.820 0 39 hm5C_associated_SNPs_40261 0 0 1 0 1 Ribosome 1 0.500231640008245 0.973531603813172 0.999536719983509 hm5C_site_39520 DeepMRMD:0.973531603813172;iRNA_m5C:0.999536719983509 39521 chr19 2810303 2810303 1 + C T UCEC 2810288 + 2810268 2810308 41 CTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCGGAGT CTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGTGGAGT < 41bp 1 0.185086842148106 1 0.04825559258461 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THOP1 ENSG00000172009 CDS Human protein_coding chr19:2810288 chr19:2810303 nonsynonymous SNV 0.820 0 36 hm5C_associated_SNPs_40262 0 0 1 0 1 Ribosome 1 0.500231629960747 1 0.999536740078505 hm5C_site_39521 DeepMRMD:1;iRNA_m5C:0.999536740078505 39522 chr21 46931112 46931112 1 + G A UCEC 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCGGGGCACGCATCTTCTCCTTTGACAGCAAGGACGTCC < 41bp 1 0.0521757781867179 1 0.110533714294434 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931112 nonsynonymous SNV 0.699 4 29 hm5C_associated_SNPs_40263 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39522 DeepMRMD:1;iRNA_m5C:0.999536712157815 39523 chr21 46931112 46931112 1 + G A UCEC 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCGGGGCACGCATCTTCTCCTTTGACAGCAAGGACGTCCT < 41bp 1 0.0636834779663354 1 0.0525189340114594 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931112 nonsynonymous SNV 0.699 4 28 hm5C_associated_SNPs_40264 0 0 1 0 2 Nucleus 1 0.500232085351141 1 0.999535829297719 hm5C_site_39523 DeepMRMD:1;iRNA_m5C:0.999535829297719 39524 chr10 99216584 99216584 1 + A G UCEC 99216603 + 99216583 99216623 41 AATGGAATGAGCTGGGAGCCCCCTCCCTGGGTGACTGCTCA AGTGGAATGAGCTGGGAGCCCCCTCCCTGGGTGACTGCTCA < 41bp 1 0.139090360697519 1 0.111596584320068 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99216603 chr10:99216584 nonsynonymous SNV 0.998 2 2 hm5C_associated_SNPs_40265 0 0 1 0 1 Cytosol 1 0.500231643968216 1 0.999536712063567 hm5C_site_39524 DeepMRMD:1;iRNA_m5C:0.999536712063567 39525 chr9 131897082 131897082 1 + G A UCEC 131897102 + 131897082 131897122 41 GCAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG ACAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG < 41bp 1 0.485038319311215 1 0.138103365898132 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131897102 chr9:131897082 nonsynonymous SNV 0.943 2 1 hm5C_associated_SNPs_40266 0 0 0 0 2 Nucleus 1 0.500231643920894 1 0.999536712158211 hm5C_site_39525 DeepMRMD:1;iRNA_m5C:0.999536712158211 39526 chr11 9451353 9451353 1 + C A UCEC 9451359 + 9451339 9451379 41 TGAAGAAGTTACTCCTATTGCAGTAGAAATGACACAACATT TGAAGAAGTTACTCATATTGCAGTAGAAATGACACAACATT < 41bp 1 0.566084709765909 1 0.642471015453339 experiment 0.867830580468181 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9451359 chr11:9451353 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_40267 0 0 1 0 1 Cytosol 1 0.500231661526926 0.715057969093322 0.999536676946148 hm5C_site_39526 DeepMRMD:0.715057969093322;iRNA_m5C:0.999536676946148 39527 chr19 55994336 55994336 1 + G A UCEC 55994334 + 55994314 55994354 41 AGCGCGTGCACACGGGCGAGCGGCCCTTCCGCTGCCCGCTC AGCGCGTGCACACGGGCGAGCGACCCTTCCGCTGCCCGCTC < 41bp 1 0.361276526895664 1 0.573013484477997 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF628 ENSG00000197483 CDS Human protein_coding chr19:55994334 chr19:55994336 synonymous SNV . 0 23 hm5C_associated_SNPs_40268 0 0 0 0 0 exosome 1 0.500231398127421 0.853973031044006 0.999537203745158 hm5C_site_39527 DeepMRMD:0.853973031044006;iRNA_m5C:0.999537203745158 39528 chr3 183860651 183860651 1 + C A UCEC 183860652 + 183860632 183860672 41 CCGGACAGCCGGGGAGGCTCCCCTCAGATGGATGACATCAA CCGGACAGCCGGGGAGGCTACCCTCAGATGGATGACATCAA < 41bp 1 0.132071474476208 1 0.0547309517860413 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860652 chr3:183860651 nonsynonymous SNV 0.998 4 20 hm5C_associated_SNPs_40269 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39528 DeepMRMD:1;iRNA_m5C:0.999536712157815 39529 chr7 99780446 99780446 1 + C T UCEC 99780447 + 99780427 99780467 41 TTCAATGCTGTGAAAGCCGCCAAAAGTGACATGCAGGTAAA TTCAATGCTGTGAAAGCCGTCAAAAGTGACATGCAGGTAAA < 41bp 1 0.558508542679778 1 0.680691957473755 experiment 0.882982914640443 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG3 ENSG00000066923 CDS Human protein_coding chr7:99780447 chr7:99780446 nonsynonymous SNV 0.995 3 20 hm5C_associated_SNPs_40270 0 0 0 0 1 exosome 1 0.500231627309029 0.63861608505249 0.999536745381942 hm5C_site_39529 DeepMRMD:0.63861608505249;iRNA_m5C:0.999536745381942 39530 chrX 69354390 69354390 1 + A G UCEC 69354374 + 69354354 69354394 41 CTCCTTTTTGCTCTTCCAGCCGAAATGAAGATTTGGAAGAG CTCCTTTTTGCTCTTCCAGCCGAAATGAAGATTTGGGAGAG < 41bp 1 0.598755320205694 1 0.859632968902588 experiment 0.802489359588612 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69354374 chrX:69354390 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_40271 0 0 1 0 1 Cytosol 1 0.500231643915927 0.280734062194824 0.999536712168146 hm5C_site_39530 DeepMRMD:0.280734062194824;iRNA_m5C:0.999536712168146 39531 chr7 150034004 150034004 1 + C T UCEC 150034008 + 150033988 150034028 41 GACTGCAGATCACACCCCAGCTGCTGAAGTCACGCACAGGC GACTGCAGATCACACCTCAGCTGCTGAAGTCACGCACAGGC < 41bp 1 0.547413237582776 1 0.435217499732971 experiment 0.905173524834448 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRRC61 ENSG00000127399 CDS Human protein_coding chr7:150034008 chr7:150034004 synonymous SNV . 0 17 hm5C_associated_SNPs_40272 0 0 0 0 0 Cytosol 1 0.500231644664656 1 0.999536710670688 hm5C_site_39531 DeepMRMD:1;iRNA_m5C:0.999536710670688 39532 chr19 1041936 1041936 1 + G T UCEC 1041928 + 1041908 1041948 41 CCTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGC CCTGCTTTCCGCAGCTGACACCGGGCGATGAGCCCGGGCGC < 41bp 1 0.607440176873246 1 0.881274461746216 experiment 0.785119646253509 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041928 chr19:1041936 nonsynonymous SNV 0.037 4 29 hm5C_associated_SNPs_40273 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921057 0.237451076507568 0.999536712157885 hm5C_site_39532 DeepMRMD:0.237451076507568;iRNA_m5C:0.999536712157885 39533 chr19 1041936 1041936 1 + G T UCEC 1041929 + 1041909 1041949 41 CTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCC CTGCTTTCCGCAGCTGACACCGGGCGATGAGCCCGGGCGCC < 41bp 1 0.412534870860892 1 0.95961993932724 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041929 chr19:1041936 nonsynonymous SNV 0.037 4 28 hm5C_associated_SNPs_40274 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921086 0.08076012134552 0.999536712157829 hm5C_site_39533 DeepMRMD:0.08076012134552;iRNA_m5C:0.999536712157829 39534 chr19 1041936 1041936 1 + G T UCEC 1041933 + 1041913 1041953 41 TTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAG TTTCCGCAGCTGACACCGGGCGATGAGCCCGGGCGCCTGAG < 41bp 1 0.170796192989615 1 0.218703329563141 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041933 chr19:1041936 nonsynonymous SNV 0.037 4 24 hm5C_associated_SNPs_40275 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921158 1 0.999536712157684 hm5C_site_39534 DeepMRMD:1;iRNA_m5C:0.999536712157684 39535 chr19 1041936 1041936 1 + G T UCEC 1041940 + 1041920 1041960 41 AGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC AGCTGACACCGGGCGATGAGCCCGGGCGCCTGAGCAACTTC < 41bp 1 0.413570007369051 1 0.482476830482483 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041940 chr19:1041936 nonsynonymous SNV 0.037 4 17 hm5C_associated_SNPs_40276 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643890609 1 0.999536712218781 hm5C_site_39535 DeepMRMD:1;iRNA_m5C:0.999536712218781 39536 chr19 1041936 1041936 1 + G T UCEC 1041941 + 1041921 1041961 41 GCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA GCTGACACCGGGCGATGAGCCCGGGCGCCTGAGCAACTTCA < 41bp 1 0.363335095301007 1 0.869527816772461 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041941 chr19:1041936 nonsynonymous SNV 0.037 4 16 hm5C_associated_SNPs_40277 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164416644 0.260944366455078 0.999536711667121 hm5C_site_39536 DeepMRMD:0.260944366455078;iRNA_m5C:0.999536711667121 39537 chr19 1041936 1041936 1 + G T UCEC 1041942 + 1041922 1041962 41 CTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA CTGACACCGGGCGATGAGCCCGGGCGCCTGAGCAACTTCAA < 41bp 1 0.431847168141743 1 0.790971040725708 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041942 chr19:1041936 nonsynonymous SNV 0.037 4 15 hm5C_associated_SNPs_40278 0 0 0 0 1 Endoplasmic reticulum 1 0.500231588722677 0.418057918548584 0.999536822554645 hm5C_site_39537 DeepMRMD:0.418057918548584;iRNA_m5C:0.999536822554645 39538 chr17 48557329 48557329 1 + G C UCEC 48557327 + 48557307 48557347 41 CCTGGAGGCTGTGGCACAGGCAGCCCACCTGCCTGCAGACT CCTGGAGGCTGTGGCACAGGCACCCCACCTGCCTGCAGACT < 41bp 1 0.393145431139776 1 0.109751880168915 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48557327 chr17:48557329 nonsynonymous SNV 0.354 0 23 hm5C_associated_SNPs_40279 0 0 1 0 0 Ribosome 1 0.500231643918478 1 0.999536712163045 hm5C_site_39538 DeepMRMD:1;iRNA_m5C:0.999536712163045 39539 chr19 11032431 11032431 1 + T C UCEC 11032439 + 11032419 11032459 41 CACTACGGGAGCTAGGGGCCCGCCCCGCGGACTGACAGCAC CACTACGGGAGCCAGGGGCCCGCCCCGCGGACTGACAGCAC < 41bp 1 0.343515230224353 1 0.364709973335266 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CARM1 ENSG00000142453 CDS Human protein_coding chr19:11032439 chr19:11032431 stoploss 0.970 0 13 hm5C_associated_SNPs_40280 0 0 1 0 0 Ribosome 1 0.500231643921109 1 0.999536712157783 hm5C_site_39539 DeepMRMD:1;iRNA_m5C:0.999536712157783 Pulmonary function in asthmatics 39540 chr11 6591869 6591869 1 + T C UCEC 6591872 + 6591852 6591892 41 AAGGGAGCTGGATGCAATGGCAGAGTGCAAGGCCCAGATGC AAGGGAGCTGGATGCAACGGCAGAGTGCAAGGCCCAGATGC < 41bp 1 0.287457872579578 1 0.754433989524841 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNHD1 ENSG00000179532 CDS Human protein_coding chr11:6591872 chr11:6591869 nonsynonymous SNV 0.955 1 18 hm5C_associated_SNPs_40281 0 0 0 0 2 chromatin 1 0.500231643920223 0.491132020950318 0.999536712159554 hm5C_site_39540 DeepMRMD:0.491132020950318;iRNA_m5C:0.999536712159554 39541 chr21 46900431 46900431 1 + G A UCEC 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTACGGGT < 41bp 1 0.035632755321488 1 0.195154398679733 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900431 synonymous SNV . 0 36 hm5C_associated_SNPs_40282 0 0 1 0 2 Nucleus 1 0.500231643901737 1 0.999536712196526 hm5C_site_39541 DeepMRMD:1;iRNA_m5C:0.999536712196526 39542 chr8 22473321 22473321 1 + C A UCEC 22473327 + 22473307 22473347 41 TCCCAGAGGCCCCTCCACCCCCCCTAGAACCTGCTGTCATC TCCCAGAGGCCCCTACACCCCCCCTAGAACCTGCTGTCATC < 41bp 1 0.274921988668513 1 0.132779747247696 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22473327 chr8:22473321 nonsynonymous SNV 0.849 1 15 hm5C_associated_SNPs_40283 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39542 DeepMRMD:1;iRNA_m5C:0.999536712157815 39543 chr1 20224103 20224103 1 + G T UCEC 20224116 + 20224096 20224136 41 TACGACAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC TACGACATTGTTCGGAGGATCAATGACAACTCAGAGGCACC < 41bp 1 0.243127314685938 1 0.284197211265564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20224116 chr1:20224103 nonsynonymous SNV 0.991 4 8 hm5C_associated_SNPs_40284 0 0 1 0 2 Cytosol 1 0.500231643920827 1 0.999536712158347 hm5C_site_39543 DeepMRMD:1;iRNA_m5C:0.999536712158347 39544 chr7 101845121 101845121 1 + C T UCEC 101845118 + 101845098 101845138 41 GCCAAGGCCGAAGAAACGGGCGGCGGGAAAGAGAAGGGCAG GCCAAGGCCGAAGAAACGGGCGGTGGGAAAGAGAAGGGCAG < 41bp 1 0.194845009291193 1 0.431856393814087 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101845118 chr7:101845121 synonymous SNV . 0 24 hm5C_associated_SNPs_40285 0 0 1 0 0 Exosome 1 0.500231643920475 1 0.999536712159049 hm5C_site_39544 DeepMRMD:1;iRNA_m5C:0.999536712159049 39545 chr1 41215334 41215334 1 + A G UCEC 41215344 + 41215324 41215364 41 TTCACACAGAAGATAACAAGCGCCGGACTCTACAGGTATTA TTCACACAGAGGATAACAAGCGCCGGACTCTACAGGTATTA < 41bp 1 0.645180328316844 1 0.524725914001465 experiment 0.709639343366311 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFYC ENSG00000066136 CDS Human protein_coding chr1:41215344 chr1:41215334 synonymous SNV . 0 11 hm5C_associated_SNPs_40286 0 0 1 0 2 Ribosome 1 0.500231643855758 0.95054817199707 0.999536712288484 hm5C_site_39545 DeepMRMD:0.95054817199707;iRNA_m5C:0.999536712288484 39546 chr21 45736366 45736366 1 + G A UCEC 45736382 + 45736362 45736402 41 CCACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA CCACATGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGA < 41bp 1 0.388697325797164 1 0.234776675701141 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736382 chr21:45736366 nonsynonymous SNV 0.662 4 5 hm5C_associated_SNPs_40287 0 0 1 0 2 Ribosome 1 0.500231645715872 1 0.999536708568255 hm5C_site_39546 DeepMRMD:1;iRNA_m5C:0.999536708568255 39547 chr21 45736366 45736366 1 + G A UCEC 45736384 + 45736364 45736404 41 ACGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC ACATGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATC < 41bp 1 0.0837831022520772 1 0.0993862152099609 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736384 chr21:45736366 nonsynonymous SNV 0.662 4 3 hm5C_associated_SNPs_40288 0 0 1 0 2 Ribosome 1 0.500231643929651 1 0.999536712140699 hm5C_site_39547 DeepMRMD:1;iRNA_m5C:0.999536712140699 39548 chr21 45736366 45736366 1 + G A UCEC 45736385 + 45736365 45736405 41 CGTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC CATGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCC < 41bp 1 0.0737244474751506 1 0.0793107748031616 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736385 chr21:45736366 nonsynonymous SNV 0.662 4 2 hm5C_associated_SNPs_40289 0 0 1 0 2 Ribosome 1 0.500231643920941 1 0.999536712158119 hm5C_site_39548 DeepMRMD:1;iRNA_m5C:0.999536712158119 39549 chr21 45736366 45736366 1 + G A UCEC 45736386 + 45736366 45736406 41 GTGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT ATGCAGCGGGGAGGGACGCCCTCTGCCTTCGACCGGATCCT < 41bp 1 0.354993313327899 1 0.373308569192886 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45736386 chr21:45736366 nonsynonymous SNV 0.662 4 1 hm5C_associated_SNPs_40290 0 0 1 0 2 Ribosome 1 0.500231643921104 1 0.999536712157791 hm5C_site_39549 DeepMRMD:1;iRNA_m5C:0.999536712157791 39550 chr11 64033415 64033415 1 + T C UCEC 64033434 + 64033414 64033454 41 ATCAGGAGTTCCAGAACAGACAGGTGCAGAGCCTGCTGGAG ACCAGGAGTTCCAGAACAGACAGGTGCAGAGCCTGCTGGAG < 41bp 1 0.661398864362401 1 0.832162141799927 experiment 0.677202271275197 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64033434 chr11:64033415 synonymous SNV . 0 2 hm5C_associated_SNPs_40291 0 0 1 0 2 Ribosome 1 0.500231643921092 0.335675716400146 0.999536712157815 hm5C_site_39550 DeepMRMD:0.335675716400146;iRNA_m5C:0.999536712157815 39551 chr12 56531997 56531997 1 + C T UCEC 56531999 + 56531979 56532019 41 GAGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCG GAGGATGTCCCATCTGGCTGCCTGCACTTGCGCCTGGAGCG < 41bp 1 0.0534856748086668 1 0.35758364200592 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531999 chr12:56531997 nonsynonymous SNV 0.998 2 19 hm5C_associated_SNPs_40292 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921102 1 0.999536712157796 hm5C_site_39551 DeepMRMD:1;iRNA_m5C:0.999536712157796 Waist-hip ratio 39552 chr12 56531997 56531997 1 + C T UCEC 56532000 + 56531980 56532020 41 AGGATGTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGT AGGATGTCCCATCTGGCTGCCTGCACTTGCGCCTGGAGCGT < 41bp 1 0.641438608042177 1 0.643640995025635 experiment 0.717122783915646 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532000 chr12:56531997 nonsynonymous SNV 0.998 2 18 hm5C_associated_SNPs_40293 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 0.71271800994873 0.999536712157815 hm5C_site_39552 DeepMRMD:0.71271800994873;iRNA_m5C:0.999536712157815 39553 chr7 99956610 99956610 1 + C T UCEC 99956624 + 99956604 99956644 41 ACCAGTCTGTGTATTTCTGCCGAGTCGAGCTGGACACCCGG ACCAGTTTGTGTATTTCTGCCGAGTCGAGCTGGACACCCGG < 41bp 1 0.553800524244235 1 0.750084042549133 experiment 0.892398951511529 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956624 chr7:99956610 nonsynonymous SNV 0.049 3 7 hm5C_associated_SNPs_40294 0 0 1 0 0 Cytosol 1 0.501428885097644 0.499831914901734 0.997142229804712 hm5C_site_39553 DeepMRMD:0.499831914901734;iRNA_m5C:0.997142229804712 39554 chr22 24204367 24204367 1 + C A UCEC 24204381 + 24204361 24204401 41 ACCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTC ACCTCTATATCATCAATGCCCCGACCTTGGTATGTATCCTC < 41bp 1 0.09344841978039 1 0.0547647178173065 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24204381 chr22:24204367 nonsynonymous SNV 0.993 3 7 hm5C_associated_SNPs_40295 0 0 1 0 2 nucleoplasm 1 0.500231712549335 1 0.99953657490133 hm5C_site_39554 DeepMRMD:1;iRNA_m5C:0.99953657490133 39555 chr22 24204367 24204367 1 + C A UCEC 24204382 + 24204362 24204402 41 CCTCTCTATCATCAATGCCCCGACCTTGGTATGTATCCTCT CCTCTATATCATCAATGCCCCGACCTTGGTATGTATCCTCT < 41bp 1 0.159949257247817 1 0.334225416183472 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24204382 chr22:24204367 nonsynonymous SNV 0.993 3 6 hm5C_associated_SNPs_40296 0 0 1 0 2 nucleoplasm 1 0.500231643860399 1 0.999536712279202 hm5C_site_39555 DeepMRMD:1;iRNA_m5C:0.999536712279202 39556 chr22 24204367 24204367 1 + C A UCEC 24204386 + 24204366 24204406 41 TCTATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG TATATCATCAATGCCCCGACCTTGGTATGTATCCTCTCTGG < 41bp 1 0.451345587816014 1 0.0657042562961578 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24204386 chr22:24204367 nonsynonymous SNV 0.993 3 2 hm5C_associated_SNPs_40297 0 0 1 0 2 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_39556 DeepMRMD:1;iRNA_m5C:0.999536712157815 39557 chr19 41106010 41106010 1 + G C UCEC 41106028 + 41106008 41106048 41 CGGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAG CGCCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAG < 41bp 1 0.579024288397921 1 0.766197443008423 experiment 0.841951423204157 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41106028 chr19:41106010 synonymous SNV . 0 3 hm5C_associated_SNPs_40298 0 0 0 0 2 Cytosol 1 0.500231643921092 0.467605113983154 0.999536712157815 hm5C_site_39557 DeepMRMD:0.467605113983154;iRNA_m5C:0.999536712157815 39558 chr17 3563921 3563921 1 + G T UCEC 3563941 + 3563921 3563961 41 GCGCGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGC TCGCGCACAGGCTCTGGCAGCCGTCTCAGGCAGGACTGGGC < 41bp 1 0.0883610430433398 1 0.0978665351867676 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNS ENSG00000040531 CDS Human protein_coding chr17:3563941 chr17:3563921 nonsynonymous SNV 0.449 2 1 hm5C_associated_SNPs_40300 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643841121 1 0.999536712317759 hm5C_site_39558 DeepMRMD:1;iRNA_m5C:0.999536712317759 39559 chr9 33917178 33917178 1 + G T UCEC 33917160 + 33917140 33917180 41 GACGACTTGTATGATGACGACATTGATGATGAAGATGAGGA GACGACTTGTATGATGACGACATTGATGATGAAGATGATGA < 41bp 1 0.0756682895465843 1 0.0603859722614288 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917160 chr9:33917178 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_40301 0 0 1 0 0 Cytosol 1 0.500231490132186 1 0.999537019735627 hm5C_site_39559 DeepMRMD:1;iRNA_m5C:0.999537019735627 39560 chr1 235600758 235600758 1 + T G UCEC 235600742 + 235600722 235600762 41 AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGC AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCAGTGGC < 41bp 1 0.61047073569724 1 0.112267315387726 experiment 0.779058528605519 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235600742 chr1:235600758 nonsynonymous SNV 0.005 4 37 hm5C_associated_SNPs_40302 0 0 1 0 0 chromatin 1 0.500231616203355 1 0.999536767593291 hm5C_site_39560 DeepMRMD:1;iRNA_m5C:0.999536767593291 39561 chr17 16329464 16329464 1 + C T UCEC 16329457 + 16329437 16329477 41 GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCGA GAGTTTTCAGGACTGAGCCACCTTTCCTGAAAGTTCACCGA < 41bp 1 0.00853765138118128 1 0.0666192770004272 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329457 chr17:16329464 stopgain 0.981 1 28 hm5C_associated_SNPs_40303 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643481277 1 0.999536713037446 hm5C_site_39561 DeepMRMD:1;iRNA_m5C:0.999536713037446 39562 chr2 56419934 56419934 1 + C T UCEC 56419925 + 56419905 56419945 41 GGCCAGCCTGTGCCAACTCACAGCCTCCACCGCACCCTACG GGCCAGCCTGTGCCAACTCACAGCCTCCATCGCACCCTACG < 41bp 1 0.56141827297495 1 0.242660105228424 experiment 0.877163454050099 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56419925 chr2:56419934 nonsynonymous SNV 0.035 1 30 hm5C_associated_SNPs_40304 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39562 DeepMRMD:1;iRNA_m5C:0.999536712157815 39563 chr19 49619620 49619620 1 + G A UCEC 49619603 + 49619583 49619623 41 AAGACGGATGAGGGCCTAGGCTTCAACATCATGGGTGGCAA AAGACGGATGAGGGCCTAGGCTTCAACATCATGGGTGACAA < 41bp 1 0.668362482623774 1 0.690369009971619 experiment 0.663275034752452 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LIN7B ENSG00000104863 CDS Human protein_coding chr19:49619603 chr19:49619620 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_40305 0 0 0 0 0 nucleoplasm 1 0.500231643893959 0.619261980056762 0.999536712212081 hm5C_site_39563 DeepMRMD:0.619261980056762;iRNA_m5C:0.999536712212081 39564 chr1 43893249 43893249 1 + T A UCEC 43893251 + 43893231 43893271 41 CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGCGTCAG CACCATTCCGTCGAGACTAACAGGCTTACGCTGGGCGTCAG < 41bp 1 0.326197916599196 1 0.898139357566833 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43893251 chr1:43893249 stopgain 0.974 0 19 hm5C_associated_SNPs_40306 0 0 1 0 1 Cytosol 1 0.500231643921063 0.203721284866334 0.999536712157874 hm5C_site_39564 DeepMRMD:0.203721284866334;iRNA_m5C:0.999536712157874 39565 chr1 154947242 154947242 1 + C T UCEC 154947230 + 154947210 154947250 41 AACCGAGCGATCATGTCGCACAAACAAATTTACTATTCGGA AACCGAGCGATCATGTCGCACAAACAAATTTATTATTCGGA < 41bp 1 0.0861590633341113 1 0.158831715583801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS1B ENSG00000173207 CDS Human protein_coding chr1:154947230 chr1:154947242 synonymous SNV . 0 33 hm5C_associated_SNPs_40307 0 0 1 0 1 Ribosome 1 0.500231643099505 1 0.99953671380099 hm5C_site_39565 DeepMRMD:1;iRNA_m5C:0.99953671380099 39566 chr7 56129502 56129502 1 + T A UCEC 56129510 + 56129490 56129530 41 TCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGG TCAAGCAGAACAATCAGAATCAGGTCAGCTTGTGGGTGTGG < 41bp 1 0.576086153956985 1 0.389569699764252 experiment 0.84782769208603 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56129510 chr7:56129502 nonsynonymous SNV 0.999 0 13 hm5C_associated_SNPs_40308 0 0 1 0 2 Ribosome 1 0.500231643970685 1 0.999536712058629 hm5C_site_39566 DeepMRMD:1;iRNA_m5C:0.999536712058629 39567 chr6 116600417 116600417 1 + C T UCEC 116600405 - 116600385 116600425 41 TGGAGGTAGAGGAGCAGCCGCCAGAAGGTGAAGAAATAGAA TGGAGGTAAAGGAGCAGCCGCCAGAAGGTGAAGAAATAGAA < 41bp 1 0.493566353661123 1 0.447255969047546 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TSPYL1 ENSG00000189241 CDS Human protein_coding chr6:116600405 chr6:116600417 nonsynonymous SNV 0.009 0 9 hm5C_associated_SNPs_40309 0 0 1 0 0 Ribosome 1 0.500231643921099 1 0.999536712157802 hm5C_site_39567 DeepMRMD:1;iRNA_m5C:0.999536712157802 39568 chr6 116600417 116600417 1 + C T UCEC 116600411 - 116600391 116600431 41 AGCAGATGGAGGTAGAGGAGCAGCCGCCAGAAGGTGAAGAA AGCAGATGGAGGTAAAGGAGCAGCCGCCAGAAGGTGAAGAA < 41bp 1 0.573885541995956 1 0.48793026804924 experiment 0.852228916008088 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSPYL1 ENSG00000189241 CDS Human protein_coding chr6:116600411 chr6:116600417 nonsynonymous SNV 0.009 0 15 hm5C_associated_SNPs_40310 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39568 DeepMRMD:1;iRNA_m5C:0.999536712157815 39569 chr1 70883646 70883646 1 + G A UCEC 70883650 + 70883630 70883670 41 TGCTTCAGGTTTAGCAGCCACTGTAACTATTACCCATCTTT TGCTTCAGGTTTAGCAACCACTGTAACTATTACCCATCTTT < 41bp 1 0.429426975785173 1 0.237915933132172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTH ENSG00000116761 CDS Human protein_coding chr1:70883650 chr1:70883646 nonsynonymous SNV 0.802 4 17 hm5C_associated_SNPs_40311 0 0 1 1 2 Cytosol 1 0.500231643920235 1 0.999536712159531 hm5C_site_39569 DeepMRMD:1;iRNA_m5C:0.999536712159531 39570 chr1 171519298 171519298 1 + T C UCEC 171519315 + 171519295 171519335 41 TGGTTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTT TGGCTTTACTGAAGTGGTATCCAAAAAACAACAAAAACGTT < 41bp 1 0.0854618255166637 1 0.727924108505249 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171519315 chr1:171519298 synonymous SNV . 0 4 hm5C_associated_SNPs_40312 0 0 1 0 2 Cytosol 1 0.500198594990904 0.544151782989502 0.999602810018192 hm5C_site_39570 DeepMRMD:0.544151782989502;iRNA_m5C:0.999602810018192 39571 chr11 61252164 61252164 1 + G A UCEC 61252171 + 61252151 61252191 41 TCCTCCCAGGTCCGGAAGGTCCATTTCGACACCCAGGAGCA TCCTCCCAGGTCCAGAAGGTCCATTTCGACACCCAGGAGCA < 41bp 1 0.0826447054136452 1 0.02166348695755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252171 chr11:61252164 nonsynonymous SNV 0.968 0 14 hm5C_associated_SNPs_40314 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39571 DeepMRMD:1;iRNA_m5C:0.999536712157815 39572 chr16 57171156 57171156 1 + C T UCEC 57171175 + 57171155 57171195 41 CCGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGG CTGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGG < 41bp 1 0.611750001214272 1 0.341713309288025 experiment 0.776499997571457 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57171175 chr16:57171156 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_40315 0 0 1 0 2 chromatin 1 0.500231643910979 1 0.999536712178043 hm5C_site_39572 DeepMRMD:1;iRNA_m5C:0.999536712178043 39573 chr16 22337236 22337236 1 + C T UCEC 22337234 + 22337214 22337254 41 GTGTGCGGATCAAGGAGGAGCCCGTGAGCGAGGAGGGCGAG GTGTGCGGATCAAGGAGGAGCCTGTGAGCGAGGAGGGCGAG < 41bp 1 0.26159337864261 1 0.215464681386948 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337234 chr16:22337236 synonymous SNV . 0 23 hm5C_associated_SNPs_40316 0 0 1 0 0 Ribosome 1 0.500231644407107 1 0.999536711185786 hm5C_site_39573 DeepMRMD:1;iRNA_m5C:0.999536711185786 39574 chr16 22337236 22337236 1 + C T UCEC 22337235 + 22337215 22337255 41 TGTGCGGATCAAGGAGGAGCCCGTGAGCGAGGAGGGCGAGG TGTGCGGATCAAGGAGGAGCCTGTGAGCGAGGAGGGCGAGG < 41bp 1 0.56834938698686 1 0.129149377346039 experiment 0.86330122602628 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337235 chr16:22337236 synonymous SNV . 0 22 hm5C_associated_SNPs_40317 0 0 1 0 0 Ribosome 1 0.500231648667059 1 0.999536702665882 hm5C_site_39574 DeepMRMD:1;iRNA_m5C:0.999536702665882 39575 chr22 45579383 45579383 1 + C T UCEC 45579387 + 45579367 45579407 41 GACACAGCTTTTGGTGCGGGCAGACACCAATTTAGGTGGGT GACACAGCTTTTGGTGTGGGCAGACACCAATTTAGGTGGGT < 41bp 1 0.142146113119508 1 0.465346187353134 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP50 ENSG00000093000 CDS Human protein_coding chr22:45579387 chr22:45579383 nonsynonymous SNV 0.997 4 17 hm5C_associated_SNPs_40318 0 0 1 0 1 Ribosome 1 0.500231667615562 1 0.999536664768875 hm5C_site_39575 DeepMRMD:1;iRNA_m5C:0.999536664768875 39576 chr20 47896922 47896922 1 + G A UCEC 47896909 + 47896889 47896929 41 GACAGATCGACTATGTTGATCTAACTTTTCTAAGCCAGTTT GACAGATCGACTATGTTGATCTAACTTTTCTAAACCAGTTT < 41bp 1 0.0899695107467835 1 0.122874319553375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896909 chr20:47896922 . . 0 34 hm5C_associated_SNPs_40319 0 0 1 7 0 unknown 1 0.500231643986241 1 0.999536712027518 hm5C_site_39576 DeepMRMD:1;iRNA_m5C:0.999536712027518 39577 chr20 47896922 47896922 1 + G A UCEC 47896942 + 47896922 47896962 41 GCCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG ACCAGTTTCTGTCTGATATGCCAGCTTGAGCAGCTCCTTTG < 41bp 1 0.230526082422532 1 0.0709923803806305 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNORD12B ENSG00000222365 ncRNA_exonic Human snoRNA chr20:47896942 chr20:47896922 . . 0 1 hm5C_associated_SNPs_40320 0 0 1 7 0 unknown 1 0.500231627320662 1 0.999536745358677 hm5C_site_39577 DeepMRMD:1;iRNA_m5C:0.999536745358677 39578 chr3 47046792 47046792 1 + G A UCEC 47046776 + 47046756 47046796 41 TACCTCATCCGCGTGGAGCCCTTCACCTCCCTGCACGTCCA TACCTCATCCGCGTGGAGCCCTTCACCTCCCTGCACATCCA < 41bp 1 0.229059075011673 1 0.311226785182953 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47046776 chr3:47046792 nonsynonymous SNV 0.982 0 37 hm5C_associated_SNPs_40321 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_39578 DeepMRMD:1;iRNA_m5C:0.999536712157816 39579 chr7 73604160 73604160 1 + C T UCEC 73604152 + 73604132 73604172 41 TATTTTCCCTTTATCATTAGCTGTTGGGCGATCGGTCACTT TATTTTCCCTTTATCATTAGCTGTTGGGTGATCGGTCACTT < 41bp 1 0.2065848394094 1 0.00834459066390991 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4H ENSG00000106682 CDS Human protein_coding chr7:73604152 chr7:73604160 synonymous SNV . 0 29 hm5C_associated_SNPs_40322 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_39579 DeepMRMD:1;iRNA_m5C:0.999536712157815 39580 chr6 31928234 31928234 1 + C T UCEC 31928230 + 31928210 31928250 41 TCTTGCTGGAGAACACAAATCTCTCGGCTACAACCTCCTTG TCTTGCTGGAGAACACAAATCTCTTGGCTACAACCTCCTTG < 41bp 1 0.428856158752174 1 0.130678206682205 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31928230 chr6:31928234 nonsynonymous SNV 0.790 3 25 hm5C_associated_SNPs_40323 0 0 0 0 2 chromatin 1 0.50023164387079 1 0.99953671225842 hm5C_site_39580 DeepMRMD:1;iRNA_m5C:0.99953671225842 39581 chr1 151374065 151374065 1 + A G UCEC 151374064 + 151374044 151374084 41 AGGTGTTGAAATAGAGGGACCATTGTCTACAGAGACCAACT AGGTGTTGAAATAGAGGGACCGTTGTCTACAGAGACCAACT < 41bp 1 0.137155660804335 1 0.102102071046829 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151374064 chr1:151374065 synonymous SNV . 0 22 hm5C_associated_SNPs_40324 0 0 1 0 2 Ribosome 1 0.500231643905615 1 0.999536712188769 hm5C_site_39581 DeepMRMD:1;iRNA_m5C:0.999536712188769 39582 chr5 71493384 71493384 1 + C T UCEC 71493379 + 71493359 71493399 41 AAAGTTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATC AAAGTTTTGTCTCCTTTACGCAGCCTGCCCCTCATTGGATC < 41bp 1 0.235969748960134 1 0.429347455501556 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493379 chr5:71493384 nonsynonymous SNV 0.606 3 26 hm5C_associated_SNPs_40325 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39582 DeepMRMD:1;iRNA_m5C:0.999536712157815 39583 chr5 71493384 71493384 1 + C T UCEC 71493383 + 71493363 71493403 41 TTTTGTCTCCTTTACGCAGCCCGCCCCTCATTGGATCCGAG TTTTGTCTCCTTTACGCAGCCTGCCCCTCATTGGATCCGAG < 41bp 1 0.110121381407716 1 0.111367434263229 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71493383 chr5:71493384 nonsynonymous SNV 0.606 3 22 hm5C_associated_SNPs_40326 0 0 1 0 0 Cytosol 1 0.500231647424558 1 0.999536705150884 hm5C_site_39583 DeepMRMD:1;iRNA_m5C:0.999536705150884 39584 chr11 111575824 111575824 1 + G C UCEC 111575822 + 111575802 111575842 41 AGCAGAGACTTGATGGCCGCCAGCGTCGGCCTAGCACCATT AGCAGAGACTTGATGGCCGCCACCGTCGGCCTAGCACCATT < 41bp 1 0.53334398020491 1 0.552811622619629 experiment 0.93331203959018 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control SIK2 ENSG00000170145 CDS Human protein_coding chr11:111575822 chr11:111575824 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_40327 0 0 0 0 1 Cytosol 1 0.500231643921087 0.894376754760742 0.999536712157827 hm5C_site_39584 DeepMRMD:0.894376754760742;iRNA_m5C:0.999536712157827 39585 chr1 42925433 42925433 1 + A G UCEC 42925451 + 42925431 42925471 41 CTAATATCCTTGAGTCACGACAGTCCTTTGTGTTTATTGTA CTGATATCCTTGAGTCACGACAGTCCTTTGTGTTTATTGTA < 41bp 1 0.0715687539490957 1 0.0766753554344177 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPCS ENSG00000127125 CDS Human protein_coding chr1:42925451 chr1:42925433 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_40330 0 0 1 0 0 Ribosome 1 0.500231643923073 1 0.999536712153854 hm5C_site_39585 DeepMRMD:1;iRNA_m5C:0.999536712153854 39586 chr16 2806558 2806558 1 + C T UCEC 2806567 + 2806547 2806587 41 AGCGCAAGCGGCGCGTCGAGCTGCGATGCCTCGAGCTGGAG AGCGCAAGCGGTGCGTCGAGCTGCGATGCCTCGAGCTGGAG < 41bp 1 0.590478686780193 1 0.18827360868454 experiment 0.819042626439614 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806567 chr16:2806558 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_40331 0 0 1 0 1 Nucleus 1 0.500231642643487 1 0.999536714713026 hm5C_site_39586 DeepMRMD:1;iRNA_m5C:0.999536714713026 39587 chr16 2806558 2806558 1 + C T UCEC 2806570 + 2806550 2806590 41 GCAAGCGGCGCGTCGAGCTGCGATGCCTCGAGCTGGAGGAG GCAAGCGGTGCGTCGAGCTGCGATGCCTCGAGCTGGAGGAG < 41bp 1 0.219474062559622 1 0.252280622720718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2806570 chr16:2806558 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_40332 0 0 1 0 1 Nucleus 1 0.500231478832852 1 0.999537042334297 hm5C_site_39587 DeepMRMD:1;iRNA_m5C:0.999537042334297 39588 chr5 153709262 153709262 1 + G A UCEC 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCACCGAGA < 41bp 1 0.616441170321862 1 0.937903046607971 experiment 0.767117659356277 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709262 nonsynonymous SNV 0.798 1 35 hm5C_associated_SNPs_40333 0 0 0 0 1 Ribosome 1 0.500218250197242 0.124193906784058 0.999563499605516 hm5C_site_39588 DeepMRMD:0.124193906784058;iRNA_m5C:0.999563499605516 39589 chr15 74325022 74325022 1 + A T UCEC 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTTCGCC < 41bp 1 0.30794270951333 1 0.0548006296157837 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325022 nonsynonymous SNV 0.001 0 37 hm5C_associated_SNPs_40335 0 0 1 0 2 Cytosol 1 0.50023164393006 1 0.99953671213988 hm5C_site_39589 DeepMRMD:1;iRNA_m5C:0.99953671213988 39590 chr2 128867290 128867290 1 + T C UCEC 128867287 + 128867267 128867307 41 GAAGACTTGTGAATCTGATACCCTTGAGGCTCTTCTACTGA GAAGACTTGTGAATCTGATACCCCTGAGGCTCTTCTACTGA < 41bp 1 0.093310515274827 1 0.0823681652545929 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128867287 chr2:128867290 nonsynonymous SNV 0.038 4 24 hm5C_associated_SNPs_40336 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39590 DeepMRMD:1;iRNA_m5C:0.999536712157815 39591 chr19 38633324 38633324 1 + C T UCEC 38633337 + 38633317 38633357 41 CCACCTACGTGAGATACAAGCCATCCCCAGAAAGGTCAGCC CCACCTATGTGAGATACAAGCCATCCCCAGAAAGGTCAGCC < 41bp 1 0.0120128098771262 1 0.127044051885605 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38633337 chr19:38633324 synonymous SNV . 0 8 hm5C_associated_SNPs_40337 0 0 0 0 1 Ribosome 1 0.500231644019662 1 0.999536711960676 hm5C_site_39591 DeepMRMD:1;iRNA_m5C:0.999536711960676 39592 chr2 219679347 219679347 1 + G A UCEC 219679360 + 219679340 219679380 41 CCCCACCGCTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG CCCCACCACTGGCTGAGAAACAGCCAGCCTGCTACCCCCAG < 41bp 1 0.459297450464685 1 0.214713901281357 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219679360 chr2:219679347 nonsynonymous SNV 0.637 5 8 hm5C_associated_SNPs_40338 1 0 1 0 1 cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_39592 DeepMRMD:1;iRNA_m5C:0.999536712157814 not specified not specified 39593 chr1 9776649 9776649 1 + A G UCEC 9776665 + 9776645 9776685 41 CTGTATGGCAGCTACCCGCTCTGCCAGTTCCAGGTGAGGCC CTGTGTGGCAGCTACCCGCTCTGCCAGTTCCAGGTGAGGCC < 41bp 1 0.349785227691861 1 0.136106789112091 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9776665 chr1:9776649 nonsynonymous SNV 0.777 1 5 hm5C_associated_SNPs_40339 0 0 0 0 1 Nucleus 1 0.500231645969253 1 0.999536708061495 hm5C_site_39593 DeepMRMD:1;iRNA_m5C:0.999536708061495 39594 chr14 74424915 74424915 1 + G A UCEC 74424923 + 74424903 74424943 41 CCATTTCCTATGGCCGACTCCAGCCCTTGGGTTCATATTAC CCATTTCCTATGACCGACTCCAGCCCTTGGGTTCATATTAC < 41bp 1 0.321542626452107 1 0.106587618589401 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ6 ENSG00000119723 CDS Human protein_coding chr14:74424923 chr14:74424915 nonsynonymous SNV 0.980 0 13 hm5C_associated_SNPs_40340 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_39594 DeepMRMD:1;iRNA_m5C:0.999536712157815 39595 chr17 4905844 4905844 1 + C T UCEC 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCTCATCCTGGG < 41bp 1 0.557399178575618 1 0.684067249298096 experiment 0.885201642848764 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905844 nonsynonymous SNV 0.997 3 32 hm5C_associated_SNPs_40341 0 0 1 0 2 Ribosome 1 0.500231643921093 0.631865501403808 0.999536712157814 hm5C_site_39595 DeepMRMD:0.631865501403808;iRNA_m5C:0.999536712157814 39596 chr2 67631733 67631733 1 + A G UCEC 67631731 + 67631711 67631751 41 TCAGAAAGTATATGTGAGATCAATAATAATTCCGAACATGG TCAGAAAGTATATGTGAGATCAGTAATAATTCCGAACATGG < 41bp 1 0.634913078504186 1 0.0596550703048706 experiment 0.730173842991629 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ETAA1 ENSG00000143971 CDS Human protein_coding chr2:67631731 chr2:67631733 nonsynonymous SNV 0.977 1 23 hm5C_associated_SNPs_40342 0 0 1 0 0 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39596 DeepMRMD:1;iRNA_m5C:0.999536712157815 39597 chr16 310004 310004 1 + C T UCEC 309995 + 309975 310015 41 CTCTCCCTGCACCTTTGCAGCTGCTGTGTCGGGGGCCAACG CTCTCCCTGCACCTTTGCAGCTGCTGTGTTGGGGGCCAACG < 41bp 1 0.520943454345205 1 0.052081823348999 experiment 0.958113091309589 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:309995 chr16:310004 nonsynonymous SNV 0.023 3 30 hm5C_associated_SNPs_40343 0 0 1 0 1 Ribosome 1 0.500231651355313 1 0.999536697289373 hm5C_site_39597 DeepMRMD:1;iRNA_m5C:0.999536697289373 39598 chr18 34349265 34349265 1 + G A UCEC 34349255 + 34349235 34349275 41 TAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCA TAGTTCCTGGACTATGGGAACTGATGACTCACCCAATGTCA < 41bp 1 0.148224857131059 1 0.106146484613419 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34349255 chr18:34349265 synonymous SNV . 0 31 hm5C_associated_SNPs_40344 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39598 DeepMRMD:1;iRNA_m5C:0.999536712157815 39599 chr10 24817003 24817003 1 + C T UCEC 24816988 + 24816968 24817008 41 CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTG CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCTCACTG < 41bp 1 0.126767731673633 1 0.0903530716896057 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816988 chr10:24817003 nonsynonymous SNV 0.002 1 36 hm5C_associated_SNPs_40345 0 0 1 0 1 Nucleus 1 0.500231206786269 1 0.999537586427461 hm5C_site_39599 DeepMRMD:1;iRNA_m5C:0.999537586427461 39600 chr10 24817003 24817003 1 + C T UCEC 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAAATCTGGAGATGCCGCCAGCCACAGGCTCACTGCCAA < 41bp 1 0.250882894579743 1 0.69299578666687 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24817003 nonsynonymous SNV 0.002 1 32 hm5C_associated_SNPs_40346 0 0 1 0 1 Nucleus 1 0.500231655180571 0.61400842666626 0.999536689638858 hm5C_site_39600 DeepMRMD:0.61400842666626;iRNA_m5C:0.999536689638858 39601 chr19 7585170 7585170 1 + G A UCEC 7585187 + 7585167 7585207 41 TACGCCTGCCCGCACTGCTCCAAGGCCTTCGGCCAGAGCTC TACACCTGCCCGCACTGCTCCAAGGCCTTCGGCCAGAGCTC < 41bp 1 0.629032054151826 1 0.686919033527374 experiment 0.741935891696349 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ZNF358 ENSG00000198816 CDS Human protein_coding chr19:7585187 chr19:7585170 nonsynonymous SNV 0.889 0 4 hm5C_associated_SNPs_40347 0 0 1 0 0 Cytosol 1 0.500231643921092 0.626161932945252 0.999536712157815 hm5C_site_39601 DeepMRMD:0.626161932945252;iRNA_m5C:0.999536712157815 39602 chr11 65270050 65270050 1 + T C UCEC 65270066 + 65270046 65270086 41 AATGTCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGG AATGCCTCTTAGAGGGTGGGCTTTTGTTGATGAGGGAGGGG < 41bp 1 0.0784110468276906 1 0.137608468532562 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270066 chr11:65270050 . . 0 5 hm5C_associated_SNPs_40348 0 0 1 5 0 unknown 1 0.500231643921376 1 0.999536712157248 hm5C_site_39602 DeepMRMD:1;iRNA_m5C:0.999536712157248 39603 chr17 45757957 45757957 1 + G A UCEC 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGGCAGAGATCGAAGACTAACAAA < 41bp 1 0.357148945768975 1 0.231601715087891 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757957 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_40349 0 0 1 0 2 Cytosol 1 0.500231643873995 1 0.999536712252011 hm5C_site_39603 DeepMRMD:1;iRNA_m5C:0.999536712252011 39604 chr14 24634125 24634125 1 + G A UCEC 24634110 + 24634090 24634130 41 CACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACGAGTGC CACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACAAGTGC < 41bp 1 0.553441960231784 1 0.523246705532074 experiment 0.893116079536432 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRF9 ENSG00000213928 CDS Human protein_coding chr14:24634110 chr14:24634125 nonsynonymous SNV 0.990 1 36 hm5C_associated_SNPs_40350 0 0 0 0 1 Cytosol 1 0.500231643887854 0.953506588935852 0.999536712224293 hm5C_site_39604 DeepMRMD:0.953506588935852;iRNA_m5C:0.999536712224293 39605 chr7 150761823 150761823 1 + C T UCEC 150761806 + 150761786 150761826 41 GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCTGTC < 41bp 1 0.539258563340379 1 0.466611444950104 experiment 0.921482873319242 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761806 chr7:150761823 nonsynonymous SNV 0.001 0 38 hm5C_associated_SNPs_40352 0 0 1 0 1 Ribosome 1 0.500231643921105 1 0.99953671215779 hm5C_site_39605 DeepMRMD:1;iRNA_m5C:0.99953671215779 39606 chr8 92092939 92092939 1 + C T UCEC 92092950 + 92092930 92092970 41 ACACAGCTGCATGGGGAGGTCAGCTTGAGGTAAGTTTGTAG ACACAGCTGTATGGGGAGGTCAGCTTGAGGTAAGTTTGTAG < 41bp 1 0.600725503010964 1 0.818793058395386 experiment 0.798548993978073 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92092950 chr8:92092939 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_40353 0 0 1 0 2 Ribosome 1 0.500231461803775 0.362413883209228 0.99953707639245 hm5C_site_39606 DeepMRMD:0.362413883209228;iRNA_m5C:0.99953707639245 39607 chrX 101969827 101969827 1 + C T UCEC 101969837 + 101969817 101969857 41 AGCCTAGTGCCCAGGCCAAGCCTGAAAAGAAGGCTGGGGAA AGCCTAGTGCTCAGGCCAAGCCTGAAAAGAAGGCTGGGGAA < 41bp 1 0.603014173064066 1 0.422743916511536 experiment 0.793971653871867 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARMCX5-GPRASP2;GPRASP2 ENSG00000158301 CDS Human protein_coding chrX:101969837 chrX:101969827 synonymous SNV . 0 11 hm5C_associated_SNPs_40354 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_39607 DeepMRMD:1;iRNA_m5C:0.999536712157815 39608 chr16 30736387 30736387 1 + G A UCEC 30736401 + 30736381 30736421 41 CACCTCGTTCCCCTTTTTATCTGGTAAGTTTTACTTCCTCA CACCTCATTCCCCTTTTTATCTGGTAAGTTTTACTTCCTCA < 41bp 1 0.406546938851531 1 0.175181895494461 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30736401 chr16:30736387 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_40355 0 0 1 0 1 Ribosome 1 0.500231643921196 1 0.999536712157608 hm5C_site_39608 DeepMRMD:1;iRNA_m5C:0.999536712157608 39609 chr1 10231371 10231371 1 + C A UCEC 10231351 + 10231331 10231371 41 GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGC GATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGA < 41bp 1 0.21287136012134 1 0.149365782737732 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10231351 chr1:10231371 nonsynonymous SNV 0.995 4 41 hm5C_associated_SNPs_40356 0 0 1 0 1 Cytosol 1 0.500232532473611 1 0.999534935052778 hm5C_site_39609 DeepMRMD:1;iRNA_m5C:0.999534935052778 39610 chr7 94043246 94043246 1 + C T UCEC 94043239 + 94043219 94043259 41 GAAAAGGTGAACAGGGTCCCCCTGGTCCTCCAGGCTTCCAG GAAAAGGTGAACAGGGTCCCCCTGGTCTTCCAGGCTTCCAG < 41bp 1 0.147132644728823 1 0.0650010108947754 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94043239 chr7:94043246 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_40357 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_39610 DeepMRMD:1;iRNA_m5C:0.999536712157815 39611 chr19 47763896 47763896 1 + G A UCEC 47763890 + 47763870 47763910 41 GGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGG GGTCTCCTGGGACCCCTCGGCCCCCAAGGGCCAGCAAGGGG < 41bp 1 0.192725921324049 1 0.181960314512253 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763890 chr19:47763896 nonsynonymous SNV 0.998 3 27 hm5C_associated_SNPs_40358 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39611 DeepMRMD:1;iRNA_m5C:0.999536712157815 39612 chr19 47763896 47763896 1 + G A UCEC 47763891 + 47763871 47763911 41 GTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGG GTCTCCTGGGACCCCTCGGCCCCCAAGGGCCAGCAAGGGGG < 41bp 1 0.599947918705147 1 0.439490735530853 experiment 0.800104162589705 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763891 chr19:47763896 nonsynonymous SNV 0.998 3 26 hm5C_associated_SNPs_40359 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39612 DeepMRMD:1;iRNA_m5C:0.999536712157815 39613 chr19 47763896 47763896 1 + G A UCEC 47763892 + 47763872 47763912 41 TCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGG TCTCCTGGGACCCCTCGGCCCCCAAGGGCCAGCAAGGGGGG < 41bp 1 0.494915382940664 1 0.26748788356781 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763892 chr19:47763896 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_40360 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39613 DeepMRMD:1;iRNA_m5C:0.999536712157815 39614 chr19 47763896 47763896 1 + G A UCEC 47763893 + 47763873 47763913 41 CTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGC CTCCTGGGACCCCTCGGCCCCCAAGGGCCAGCAAGGGGGGC < 41bp 1 0.31055177078279 1 0.501557588577271 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763893 chr19:47763896 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_40361 0 0 1 0 1 chromatin 1 0.500231643921092 0.996884822845458 0.999536712157815 hm5C_site_39614 DeepMRMD:0.996884822845458;iRNA_m5C:0.999536712157815 39615 chr19 47763896 47763896 1 + G A UCEC 47763913 + 47763893 47763933 41 CCAGGGGCCAGCAAGGGGGGCCGGACTCCTCCACAGCAGGG CCAAGGGCCAGCAAGGGGGGCCGGACTCCTCCACAGCAGGG < 41bp 1 0.473021822052727 1 0.424394637346268 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763913 chr19:47763896 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_40362 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39615 DeepMRMD:1;iRNA_m5C:0.999536712157815 39616 chr12 95868057 95868057 1 + A G UCEC 95868059 + 95868039 95868079 41 CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA CTCTACGGCTGAGGAAGCGGCCAAGAAAAAAAGACGAAAGA < 41bp 1 0.271476564834077 1 0.489746391773224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95868059 chr12:95868057 synonymous SNV . 0 19 hm5C_associated_SNPs_40363 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39616 DeepMRMD:1;iRNA_m5C:0.999536712157815 39617 chr3 49052385 49052385 1 + C T UCEC 49052377 + 49052357 49052397 41 GCAGTGAAGATGGATCCCTCCATGTCTTCGTGCTTGCTGTG GCAGTGAAGATGGATCCCTCCATGTCTTTGTGCTTGCTGTG < 41bp 1 0.206246084894091 1 0.068099707365036 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR6 ENSG00000178252 CDS Human protein_coding chr3:49052377 chr3:49052385 synonymous SNV . 0 29 hm5C_associated_SNPs_40364 0 0 1 0 0 Nucleus 1 0.500231643915974 1 0.999536712168053 hm5C_site_39617 DeepMRMD:1;iRNA_m5C:0.999536712168053 39618 chr18 74622084 74622084 1 + G T UCEC 74622068 + 74622048 74622088 41 CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGATCCCT < 41bp 1 0.27912438726379 1 0.261260151863098 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622068 chr18:74622084 nonsynonymous SNV 0.003 0 37 hm5C_associated_SNPs_40365 0 0 0 0 2 Cytosol 1 0.50023164391751 1 0.999536712164979 hm5C_site_39618 DeepMRMD:1;iRNA_m5C:0.999536712164979 39619 chr7 44801161 44801161 1 + C T UCEC 44801172 + 44801152 44801192 41 TTCCAGCTGCGAGACTCAGTCTACAAGACCCTGATAATGAG TTCCAGCTGTGAGACTCAGTCTACAAGACCCTGATAATGAG < 41bp 1 0.623523549027576 1 0.899961709976196 experiment 0.752952901944848 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801172 chr7:44801161 stopgain 0.995 1 10 hm5C_associated_SNPs_40366 0 0 1 0 1 Cytosol 1 0.500231643920038 0.200076580047608 0.999536712159924 hm5C_site_39619 DeepMRMD:0.200076580047608;iRNA_m5C:0.999536712159924 39620 chr19 18306833 18306833 1 + G A UCEC 18306835 + 18306815 18306855 41 GTTCCTCTGACACCCCCAGGCTGTGTGGCCCTGGACACCCG GTTCCTCTGACACCCCCAAGCTGTGTGGCCCTGGACACCCG < 41bp 1 0.661079603033694 1 0.469802141189575 experiment 0.677840793932613 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18306835 chr19:18306833 nonsynonymous SNV 0.065 0 19 hm5C_associated_SNPs_40368 0 0 1 0 1 Ribosome 1 0.50023250905116 1 0.99953498189768 hm5C_site_39620 DeepMRMD:1;iRNA_m5C:0.99953498189768 39621 chr7 150034702 150034702 1 + C T UCEC 150034708 + 150034688 150034728 41 GGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCT GGTACTCAGCTCTGTGGGCCCCACCTCTTCCTTCGTCTTCT < 41bp 1 0.225075190009986 1 0.0385165512561798 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRRC61 ENSG00000127399 CDS Human protein_coding chr7:150034708 chr7:150034702 nonsynonymous SNV 0.001 0 15 hm5C_associated_SNPs_40369 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39621 DeepMRMD:1;iRNA_m5C:0.999536712157815 39622 chr11 126279211 126279211 1 + C A UCEC 126279193 + 126279173 126279213 41 GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCCT GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATACT < 41bp 1 0.304489243704343 1 0.227927803993225 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126279193 chr11:126279211 nonsynonymous SNV 0.955 0 39 hm5C_associated_SNPs_40370 0 0 1 0 2 Ribosome 1 0.50023164392109 1 0.999536712157819 hm5C_site_39622 DeepMRMD:1;iRNA_m5C:0.999536712157819 39623 chr2 10560057 10560057 1 + C T UCEC 10560051 + 10560031 10560071 41 AAGATCTACGCCAACTTCTTCCCCTACGGCGACGCTTCCAA AAGATCTACGCCAACTTCTTCCCCTATGGCGACGCTTCCAA < 41bp 1 0.135911609711531 1 0.103766471147537 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10560051 chr2:10560057 synonymous SNV . 0 27 hm5C_associated_SNPs_40371 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39623 DeepMRMD:1;iRNA_m5C:0.999536712157815 39624 chr11 44129793 44129793 1 + C T UCEC 44129787 + 44129767 44129807 41 GAGACAGCACAAGCGATGGCCCAGCTCTCTAGGTATCTCAC GAGACAGCACAAGCGATGGCCCAGCTTTCTAGGTATCTCAC < 41bp 1 0.101691251875938 1 0.104855865240097 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129787 chr11:44129793 synonymous SNV . 0 27 hm5C_associated_SNPs_40372 0 0 1 0 1 Endoplasmic reticulum 1 0.500227375913403 1 0.999545248173194 hm5C_site_39624 DeepMRMD:1;iRNA_m5C:0.999545248173194 39625 chr19 45567713 45567713 1 + G A UCEC 45567724 + 45567704 45567744 41 TACCGTTCCGGCCGCCACGCCCGCTCCCGGTCCCGCTCCTG TACCGTTCCAGCCGCCACGCCCGCTCCCGGTCCCGCTCCTG < 41bp 1 0.213156502673524 1 0.267386078834534 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLASRP ENSG00000104859 CDS Human protein_coding chr19:45567724 chr19:45567713 nonsynonymous SNV 0.085 0 10 hm5C_associated_SNPs_40373 0 0 0 0 0 chromatin 1 0.500231643920319 1 0.999536712159363 hm5C_site_39625 DeepMRMD:1;iRNA_m5C:0.999536712159363 39626 chr13 111160549 111160549 1 + T G UCEC 111160562 + 111160542 111160582 41 TTGTGGATCGGATATTCCTTCCTCATGGTATGTGGTATTTG TTGTGGAGCGGATATTCCTTCCTCATGGTATGTGGTATTTG < 41bp 1 0.0938758829203037 1 0.081095278263092 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111160562 chr13:111160549 nonsynonymous SNV 0.817 5 8 hm5C_associated_SNPs_40374 0 0 0 0 1 Cytosol 1 0.500231554096029 1 0.999536891807941 hm5C_site_39626 DeepMRMD:1;iRNA_m5C:0.999536891807941 39627 chr20 30822393 30822393 1 + C T UCEC 30822376 + 30822356 30822396 41 CTGTGTCTCCTCCTTCACTGCCTTTGTGAAGCGGGAGCGGG CTGTGTCTCCTCCTTCACTGCCTTTGTGAAGCGGGAGTGGG < 41bp 1 0.0421335216529761 1 0.033073753118515 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POFUT1 ENSG00000101346 CDS Human protein_coding chr20:30822376 chr20:30822393 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_40375 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920966 1 0.999536712158068 hm5C_site_39627 DeepMRMD:1;iRNA_m5C:0.999536712158068 39628 chr7 16737765 16737765 1 + C T UCEC 16737766 + 16737746 16737786 41 AATACTGCTACGACAACATCCATTTCATGAAAGCCTTTCAG AATACTGCTACGACAACATTCATTTCATGAAAGCCTTTCAG < 41bp 1 0.078791593376519 1 0.251858532428741 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BZW2 ENSG00000136261 CDS Human protein_coding chr7:16737766 chr7:16737765 synonymous SNV . 0 20 hm5C_associated_SNPs_40376 0 0 1 0 1 Ribosome 1 0.500231643921232 1 0.999536712157535 hm5C_site_39628 DeepMRMD:1;iRNA_m5C:0.999536712157535 39629 chr16 30960768 30960768 1 + G A UCEC 30960753 + 30960733 30960773 41 CAGTCAGCACTCGCTGCGGGCGCTCAGCTGGCGCCGCCTCT CAGTCAGCACTCGCTGCGGGCGCTCAGCTGGCGCCACCTCT < 41bp 1 0.133214661494911 1 0.0840810835361481 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30960753 chr16:30960768 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_40377 0 0 1 0 1 chromatin 1 0.500231643942731 1 0.999536712114538 hm5C_site_39629 DeepMRMD:1;iRNA_m5C:0.999536712114538 39630 chr16 30960768 30960768 1 + G A UCEC 30960757 + 30960737 30960777 41 CAGCACTCGCTGCGGGCGCTCAGCTGGCGCCGCCTCTACCT CAGCACTCGCTGCGGGCGCTCAGCTGGCGCCACCTCTACCT < 41bp 1 0.688608281680682 1 0.438232570886612 experiment 0.622783436638637 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30960757 chr16:30960768 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_40378 0 0 1 0 1 chromatin 1 0.500231643900942 1 0.999536712198116 hm5C_site_39630 DeepMRMD:1;iRNA_m5C:0.999536712198116 39631 chr3 184037539 184037539 1 + G T UCEC 184037529 + 184037509 184037549 41 CAGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAA CAGTTTCCCACTGGCGTGGCCCCCACCCCATTTTTGATGAA < 41bp 1 0.350683360122021 1 0.1387899518013 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037529 chr3:184037539 nonsynonymous SNV 0.999 3 31 hm5C_associated_SNPs_40379 0 0 1 0 2 Nucleus 1 0.500231634214581 1 0.999536731570839 hm5C_site_39631 DeepMRMD:1;iRNA_m5C:0.999536731570839 39632 chr3 184037539 184037539 1 + G T UCEC 184037530 + 184037510 184037550 41 AGTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAAC AGTTTCCCACTGGCGTGGCCCCCACCCCATTTTTGATGAAC < 41bp 1 0.0800184198904789 1 0.0718062520027161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037530 chr3:184037539 nonsynonymous SNV 0.999 3 30 hm5C_associated_SNPs_40380 0 0 1 0 2 Nucleus 1 0.500231643920381 1 0.999536712159238 hm5C_site_39632 DeepMRMD:1;iRNA_m5C:0.999536712159238 39633 chr3 184037539 184037539 1 + G T UCEC 184037531 + 184037511 184037551 41 GTTTCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACC GTTTCCCACTGGCGTGGCCCCCACCCCATTTTTGATGAACC < 41bp 1 0.0813051534611872 1 0.154028058052063 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037531 chr3:184037539 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_40381 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39633 DeepMRMD:1;iRNA_m5C:0.999536712157815 39634 chr3 184037539 184037539 1 + G T UCEC 184037534 + 184037514 184037554 41 TCCCACTGGCGTGGCCCCCACCCCAGTTTTGATGAACCAGC TCCCACTGGCGTGGCCCCCACCCCATTTTTGATGAACCAGC < 41bp 1 0.604615912372382 1 0.493823975324631 experiment 0.790768175255237 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184037534 chr3:184037539 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_40382 0 0 1 0 2 Nucleus 1 0.500231643921 1 0.999536712158001 hm5C_site_39634 DeepMRMD:1;iRNA_m5C:0.999536712158001 39635 chr14 20943223 20943223 1 + T C UCEC 20943217 + 20943197 20943237 41 GAGATAATTCAACCTGTGTCCTAGGTTTGGAGATCGTTTCC GAGATAATTCAACCTGTGTCCTAGGTCTGGAGATCGTTTCC < 41bp 1 0.438495400469362 1 0.166804909706116 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNP ENSG00000198805 CDS Human protein_coding chr14:20943217 chr14:20943223 nonsynonymous SNV 1.000 5 27 hm5C_associated_SNPs_40384 0 0 1 0 1 Ribosome 1 0.500231643921009 1 0.999536712157982 hm5C_site_39635 DeepMRMD:1;iRNA_m5C:0.999536712157982 39636 chr1 21900186 21900186 1 + C T UCEC 21900169 + 21900149 21900189 41 CCTCCTCAGGTCTCTTCGAGCCAGGGGACATGCAGTACGAG CCTCCTCAGGTCTCTTCGAGCCAGGGGACATGCAGTATGAG < 41bp 1 0.382503201370966 1 0.789461851119995 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALPL ENSG00000162551 CDS Human protein_coding chr1:21900169 chr1:21900186 synonymous SNV . 0 38 hm5C_associated_SNPs_40385 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643969193 0.42107629776001 0.999536712061613 hm5C_site_39636 DeepMRMD:0.42107629776001;iRNA_m5C:0.999536712061613 39637 chr16 3707753 3707753 1 + C T UCEC 3707766 + 3707746 3707786 41 CGAGGCGCCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT CGAGGCGTCGTTGTTCCCGACTCGGCTCTTCCCTTTAACTT < 41bp 1 0.672240479129027 1 0.477557629346848 experiment 0.655519041741945 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707766 chr16:3707753 nonsynonymous SNV 0.001 1 8 hm5C_associated_SNPs_40387 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39637 DeepMRMD:1;iRNA_m5C:0.999536712157815 39638 chr7 76110038 76110038 1 + C T UCEC 76110024 + 76110004 76110044 41 GCCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGC GCCCACAGCATCCCCTTGGGCCAGGCAGACCCCTTGCTGGC < 41bp 1 0.414758796563854 1 0.184913784265518 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110024 chr7:76110038 nonsynonymous SNV 0.997 0 35 hm5C_associated_SNPs_40388 0 0 0 0 1 Nucleus 1 0.50023189234546 1 0.99953621530908 hm5C_site_39638 DeepMRMD:1;iRNA_m5C:0.99953621530908 39639 chr7 76110038 76110038 1 + C T UCEC 76110025 + 76110005 76110045 41 CCCACAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCC CCCACAGCATCCCCTTGGGCCAGGCAGACCCCTTGCTGGCC < 41bp 1 0.36077158960136 1 0.391977310180664 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110025 chr7:76110038 nonsynonymous SNV 0.997 0 34 hm5C_associated_SNPs_40389 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39639 DeepMRMD:1;iRNA_m5C:0.999536712157815 39640 chr7 76110038 76110038 1 + C T UCEC 76110029 + 76110009 76110049 41 CAGCATCCCCTTGGGCCAGGCAGACCCCTCGCTGGCCCCTT CAGCATCCCCTTGGGCCAGGCAGACCCCTTGCTGGCCCCTT < 41bp 1 0.182695522624085 1 0.807713985443115 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110029 chr7:76110038 nonsynonymous SNV 0.997 0 30 hm5C_associated_SNPs_40390 0 0 0 0 1 Nucleus 1 0.500231643920893 0.38457202911377 0.999536712158214 hm5C_site_39640 DeepMRMD:0.38457202911377;iRNA_m5C:0.999536712158214 39641 chr18 9525736 9525736 1 + T C UCEC 9525724 + 9525704 9525744 41 CATTTGCTTTCTAGGAGTTTCTTTTGAATTGTTTACATCGA CATTTGCTTTCTAGGAGTTTCTTTTGAATTGTCTACATCGA < 41bp 1 0.0570318857717621 1 0.183971703052521 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9525724 chr18:9525736 synonymous SNV . 0 33 hm5C_associated_SNPs_40393 0 0 1 0 1 Ribosome 1 0.500231643921244 1 0.999536712157511 hm5C_site_39641 DeepMRMD:1;iRNA_m5C:0.999536712157511 39642 chr11 65156957 65156957 1 + G A UCEC 65156938 + 65156918 65156958 41 CACCGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC CACCGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCAC < 41bp 1 0.0738062428583432 1 0.0940438807010651 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65156938 chr11:65156957 nonsynonymous SNV 0.061 4 40 hm5C_associated_SNPs_40394 0 0 1 0 1 Ribosome 1 0.500227909439244 1 0.999544181121512 hm5C_site_39642 DeepMRMD:1;iRNA_m5C:0.999544181121512 39643 chr1 1425665 1425665 1 + C T UCEC 1425666 + 1425646 1425686 41 GGTCCTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCA GGTCCTGGCCAGCAATCTGTCTGAGCAGTTCGACTGTGCCA < 41bp 1 0.672996362285231 1 0.421069860458374 experiment 0.654007275429538 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1425666 chr1:1425665 nonsynonymous SNV 0.004 5 20 hm5C_associated_SNPs_40395 0 0 1 0 1 Ribosome 1 0.500231643767694 1 0.999536712464612 hm5C_site_39643 DeepMRMD:1;iRNA_m5C:0.999536712464612 39644 chr22 24236700 24236700 1 + C T UCEC 24236718 + 24236698 24236738 41 GCCTCCGTGCCGGACGGGTTCCTCTCCGAGCTCACCCAGCA GCTTCCGTGCCGGACGGGTTCCTCTCCGAGCTCACCCAGCA < 41bp 1 0.185118324193175 1 0.0489819943904877 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MIF ENSG00000240972 CDS Human protein_coding chr22:24236718 chr22:24236700 synonymous SNV . 0 3 hm5C_associated_SNPs_40396 0 0 1 0 1 Ribosome 1 0.500231643918702 1 0.999536712162596 hm5C_site_39644 DeepMRMD:1;iRNA_m5C:0.999536712162596 39645 chr1 201938664 201938664 1 + C T UCEC 201938644 + 201938624 201938664 41 AGTTGCCTTCAACTCAGTTACCTTCCTCACCTTTTGGAGAC AGTTGCCTTCAACTCAGTTACCTTCCTCACCTTTTGGAGAT < 41bp 1 0.082895962740545 1 0.0570549070835114 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TIMM17A ENSG00000134375 CDS Human protein_coding chr1:201938644 chr1:201938664 synonymous SNV . 0 41 hm5C_associated_SNPs_40397 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157812 hm5C_site_39645 DeepMRMD:1;iRNA_m5C:0.999536712157812 39646 chr1 154304467 154304467 1 + G A UCEC 154304485 + 154304465 154304505 41 TGGGCTGTGTTACATAGAGACAGCAGAACTTGATGGGTAAG TGAGCTGTGTTACATAGAGACAGCAGAACTTGATGGGTAAG < 41bp 1 0.639049301793176 1 0.388315707445145 experiment 0.721901396413649 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154304485 chr1:154304467 nonsynonymous SNV 0.989 4 3 hm5C_associated_SNPs_40398 0 0 1 0 2 chromatin 1 0.500231621605409 1 0.999536756789182 hm5C_site_39646 DeepMRMD:1;iRNA_m5C:0.999536756789182 39647 chr3 136665009 136665009 1 + C T UCEC 136664991 + 136664971 136665011 41 GTTTGGAACCATCACCTCCACAGTGTGATTACATTAGGCCT GTTTGGAACCATCACCTCCACAGTGTGATTACATTAGGTCT < 41bp 1 0.564115823559856 1 0.24558824300766 experiment 0.871768352880288 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCK1 ENSG00000158092 CDS Human protein_coding chr3:136664991 chr3:136665009 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_40399 0 0 1 0 0 Ribosome 1 0.500231643926067 1 0.999536712147866 hm5C_site_39647 DeepMRMD:1;iRNA_m5C:0.999536712147866 39648 chr12 112893766 112893766 1 + A G UCEC 112893754 + 112893734 112893774 41 CAACTGCTGTACTCGATCAGCCCCTTAACACGACTCGTATA CAACTGCTGTACTCGATCAGCCCCTTAACACGGCTCGTATA < 41bp 1 0.0951418769742557 1 0.0536753237247467 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112893754 chr12:112893766 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_40400 0 0 1 0 1 Ribosome 1 0.500231643920807 1 0.999536712158385 hm5C_site_39648 DeepMRMD:1;iRNA_m5C:0.999536712158385 39649 chr11 60704148 60704148 1 + C T UCEC 60704142 + 60704122 60704162 41 GGCCCTCCTGGGGGCACCACCAGCTCCTCAAGCACCCTGGC GGCCCTCCTGGGGGCACCACCAGCTCTTCAAGCACCCTGGC < 41bp 1 0.633179746991793 1 0.851531982421875 experiment 0.733640506016413 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60704142 chr11:60704148 synonymous SNV . 0 27 hm5C_associated_SNPs_40401 0 0 1 0 0 Ribosome 1 0.500231643921093 0.29693603515625 0.999536712157814 hm5C_site_39649 DeepMRMD:0.29693603515625;iRNA_m5C:0.999536712157814 39650 chr2 37458865 37458865 1 + G T UCEC 37458880 + 37458860 37458900 41 GCTGAGGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG GCTGATGTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCG < 41bp 1 0.561096198548319 1 0.137193262577057 experiment 0.877807602903362 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458880 chr2:37458865 nonsynonymous SNV 0.004 1 6 hm5C_associated_SNPs_40402 0 0 1 0 1 chromatin 1 0.500205352545745 1 0.999589294908509 hm5C_site_39650 DeepMRMD:1;iRNA_m5C:0.999589294908509 39651 chr11 65270889 65270889 1 + A C UCEC 65270875 + 65270855 65270895 41 TAGTACACTTCACTCAGAGGCATTTGCATCTTTAAATAATT TAGTACACTTCACTCAGAGGCATTTGCATCTTTACATAATT < 41bp 1 0.0449644657603513 1 0.167975783348083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65270875 chr11:65270889 . . 0 35 hm5C_associated_SNPs_40403 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_39651 DeepMRMD:1;iRNA_m5C:0.999536712157815 39652 chr9 37430589 37430589 1 + A G UCEC 37430599 + 37430579 37430619 41 GGACTCTGCAACAAGGACTTCTTCCAGAAGATGAAGGAAAC GGACTCTGCAGCAAGGACTTCTTCCAGAAGATGAAGGAAAC < 41bp 1 0.102700254680802 1 0.151582390069962 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37430599 chr9:37430589 nonsynonymous SNV 0.999 1 11 hm5C_associated_SNPs_40404 0 0 1 0 1 Ribosome 1 0.50023164392113 1 0.999536712157739 hm5C_site_39652 DeepMRMD:1;iRNA_m5C:0.999536712157739 39653 chr19 45573289 45573289 1 + A C UCEC 45573290 + 45573270 45573310 41 GCCTTCGCAGGGAGCGGGAACGCCGAGAGAAGGAGAGAGAA GCCTTCGCAGGGAGCGGGACCGCCGAGAGAAGGAGAGAGAA < 41bp 1 0.661316053761101 1 0.39231339097023 experiment 0.677367892477798 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLASRP ENSG00000104859 CDS Human protein_coding chr19:45573290 chr19:45573289 nonsynonymous SNV 0.989 3 20 hm5C_associated_SNPs_40405 0 0 1 0 2 chromatin 1 0.50023164392112 1 0.999536712157761 hm5C_site_39653 DeepMRMD:1;iRNA_m5C:0.999536712157761 39654 chr19 45573289 45573289 1 + A C UCEC 45573292 + 45573272 45573312 41 CTTCGCAGGGAGCGGGAACGCCGAGAGAAGGAGAGAGAAGA CTTCGCAGGGAGCGGGACCGCCGAGAGAAGGAGAGAGAAGA < 41bp 1 0.456283603241897 1 0.529541909694672 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CLASRP ENSG00000104859 CDS Human protein_coding chr19:45573292 chr19:45573289 nonsynonymous SNV 0.989 3 18 hm5C_associated_SNPs_40406 0 0 1 0 2 chromatin 1 0.500231643925559 0.940916180610656 0.999536712148883 hm5C_site_39654 DeepMRMD:0.940916180610656;iRNA_m5C:0.999536712148883 39655 chr7 5336821 5336821 1 + G A UCEC 5336820 + 5336800 5336840 41 CACGACGTTGTCGCCGGGGACGTCCACTTCGTAAGTGCGCA CACGACGTTGTCGCCGGGGACATCCACTTCGTAAGTGCGCA < 41bp 1 0.0623177701615038 1 0.0926669538021088 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336820 chr7:5336821 nonsynonymous SNV 0.191 0 22 hm5C_associated_SNPs_40407 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164392213 1 0.99953671215574 hm5C_site_39655 DeepMRMD:1;iRNA_m5C:0.99953671215574 39656 chr1 110171397 110171397 1 + G A UCEC 110171392 + 110171372 110171412 41 CATGCACCGCGTGCACTCCCCCAACGTGCGCTGGCTGGTGC CATGCACCGCGTGCACTCCCCCAACATGCGCTGGCTGGTGC < 41bp 1 0.177573152087948 1 0.597100079059601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110171392 chr1:110171397 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_40408 0 0 0 0 1 Cytosol 1 0.500223675022402 0.805799841880798 0.999552649955196 hm5C_site_39656 DeepMRMD:0.805799841880798;iRNA_m5C:0.999552649955196 39657 chr11 33094111 33094111 1 + G A UCEC 33094103 + 33094083 33094123 41 CAGTCCCTGGGGGACTCAGTCCAGTTCAGAGAGAGCTGGAG CAGTCCCTGGGGGACTCAGTCCAGTTCAAAGAGAGCTGGAG < 41bp 1 0.364051472194598 1 0.824750483036041 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33094103 chr11:33094111 synonymous SNV . 0 29 hm5C_associated_SNPs_40409 0 0 0 0 2 Ribosome 1 0.500231595997272 0.350499033927918 0.999536808005457 hm5C_site_39657 DeepMRMD:0.350499033927918;iRNA_m5C:0.999536808005457 39658 chr14 39650867 39650867 1 + C T UCEC 39650849 + 39650829 39650869 41 GACATAATAGAGATAGAAAGCACAGAAGGAGCGTGGATCGG GACATAATAGAGATAGAAAGCACAGAAGGAGCGTGGATTGG < 41bp 1 0.692615971835209 1 0.104497283697128 experiment 0.614768056329582 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39650849 chr14:39650867 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_40411 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39658 DeepMRMD:1;iRNA_m5C:0.999536712157815 39659 chr10 102684002 102684002 1 + C A UCEC 102684010 + 102683990 102684030 41 ATTCTGGCAATTCTGGCCACCATTCTACCAGGAATAGTGAC ATTCTGGCAATTATGGCCACCATTCTACCAGGAATAGTGAC < 41bp 1 0.0268079221987139 1 0.242414683103561 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102684010 chr10:102684002 nonsynonymous SNV 0.951 3 13 hm5C_associated_SNPs_40412 0 0 1 0 0 Nucleus 1 0.500231638604662 1 0.999536722790677 hm5C_site_39659 DeepMRMD:1;iRNA_m5C:0.999536722790677 39660 chr7 150725691 150725691 1 + C A UCEC 150725672 + 150725652 150725692 41 GCAGGCTGCTACCGCCCCTCCGCTTCCAGACATTCTCAGCT GCAGGCTGCTACCGCCCCTCCGCTTCCAGACATTCTCAGAT < 41bp 1 0.14745959888176 1 0.189962476491928 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150725672 chr7:150725691 nonsynonymous SNV 0.950 3 40 hm5C_associated_SNPs_40413 0 0 1 0 1 Ribosome 1 0.500231644299586 1 0.999536711400827 hm5C_site_39660 DeepMRMD:1;iRNA_m5C:0.999536711400827 39661 chr7 94293201 94293201 1 + C A UCEC 94293216 + 94293196 94293236 41 GATTTCTCAGTTGATCGTGTCCGTGTCTGCTTCGTGACAAG GATTTATCAGTTGATCGTGTCCGTGTCTGCTTCGTGACAAG < 41bp 1 0.205363610081244 1 0.0399128198623657 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PEG10 ENSG00000242265 CDS Human protein_coding chr7:94293216 chr7:94293201 nonsynonymous SNV 0.977 3 6 hm5C_associated_SNPs_40415 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164113759 1 0.99953671772482 hm5C_site_39661 DeepMRMD:1;iRNA_m5C:0.99953671772482 39662 chr1 100757032 100757032 1 + G T UCEC 100757044 + 100757024 100757064 41 ATGCCAAGGAATTGGGATGACAAATCCAAATCTATAGAGTA ATGCCAAGTAATTGGGATGACAAATCCAAATCTATAGAGTA < 41bp 1 0.246406477252675 1 0.428323566913605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100757044 chr1:100757032 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_40416 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39662 DeepMRMD:1;iRNA_m5C:0.999536712157815 39663 chr7 101840361 101840361 1 + C T UCEC 101840378 + 101840358 101840398 41 TCGCCCGGCAGGTCAAAGAGCAGCTGATTAAGCACAATATC TCGTCCGGCAGGTCAAAGAGCAGCTGATTAAGCACAATATC < 41bp 1 0.136531356084057 1 0.099119246006012 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101840378 chr7:101840361 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_40417 0 0 1 0 0 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39663 DeepMRMD:1;iRNA_m5C:0.999536712157815 39664 chr19 17450311 17450311 1 + G A UCEC 17450306 + 17450286 17450326 41 CCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTC CCGTGACGTGCTGGAGACCCCAGTCAACCTGGCCGGATTTC < 41bp 1 0.265046606973203 1 0.797943711280823 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450306 chr19:17450311 nonsynonymous SNV 0.970 1 26 hm5C_associated_SNPs_40418 0 0 1 0 1 Ribosome 1 0.500231643926371 0.404112577438354 0.999536712147259 hm5C_site_39664 DeepMRMD:0.404112577438354;iRNA_m5C:0.999536712147259 39665 chr1 31899647 31899647 1 + G A UCEC 31899651 + 31899631 31899671 41 TGTCTGCGTGTCCATCGCTGCTGTCCTGCCCAAGGTCCAGG TGTCTGCGTGTCCATCACTGCTGTCCTGCCCAAGGTCCAGG < 41bp 1 0.171000739696717 1 0.0246924161911011 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31899651 chr1:31899647 nonsynonymous SNV 0.103 1 17 hm5C_associated_SNPs_40419 0 0 1 0 1 Endoplasmic reticulum 1 0.500231800942652 1 0.999536398114696 hm5C_site_39665 DeepMRMD:1;iRNA_m5C:0.999536398114696 39666 chr20 44571766 44571766 1 + G A UCEC 44571747 + 44571727 44571767 41 GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCGC GTCCTGCAGGCATTGAGCCTCCACGGGAGTCTTTCAACCAC < 41bp 1 0.396471336122454 1 0.451240628957748 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571747 chr20:44571766 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_40420 0 0 1 0 1 chromatin 1 0.50023164391658 1 0.99953671216684 hm5C_site_39666 DeepMRMD:1;iRNA_m5C:0.99953671216684 39667 chr3 49720123 49720123 1 + G A UCEC 49720112 + 49720092 49720132 41 GACCTACAGGGCCTGCGTGGCCCGGAACCCCGTGATCAACA GACCTACAGGGCCTGCGTGGCCCGGAACCCCATGATCAACA < 41bp 1 0.499217720944396 1 0.0811667740345001 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49720112 chr3:49720123 nonsynonymous SNV 0.906 4 32 hm5C_associated_SNPs_40421 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39667 DeepMRMD:1;iRNA_m5C:0.999536712157815 39668 chr13 24858311 24858311 1 + G A UCEC 24858291 + 24858271 24858311 41 AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGA < 41bp 1 0.133959343523424 1 0.227043569087982 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858291 chr13:24858311 nonsynonymous SNV 0.757 3 41 hm5C_associated_SNPs_40422 0 0 1 0 2 Cytosol 1 0.500231643920884 1 0.999536712158231 hm5C_site_39668 DeepMRMD:1;iRNA_m5C:0.999536712158231 39669 chr22 39773683 39773683 1 + G A UCEC 39773703 + 39773683 39773723 41 GGCACAGCCGTAGGCCTCCCCGGCTTGCAGAGGCCGGCAGC AGCACAGCCGTAGGCCTCCCCGGCTTGCAGAGGCCGGCAGC < 41bp 1 0.466476466782069 1 0.457827299833298 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNGR1 ENSG00000100321 CDS Human protein_coding chr22:39773703 chr22:39773683 synonymous SNV . 0 1 hm5C_associated_SNPs_40423 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_39669 DeepMRMD:1;iRNA_m5C:0.999536712157815 39670 chr3 9803155 9803155 1 + C T UCEC 9803147 - 9803127 9803167 41 ATAGGTGTCATCGCCTACATCTTGTAAGTGGGGCTTGGCCA ATAGGTGTCATCACCTACATCTTGTAAGTGGGGCTTGGCCA < 41bp 1 0.354443271137924 1 0.173574209213257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9803147 chr3:9803155 nonsynonymous SNV 0.983 1 13 hm5C_associated_SNPs_40424 0 0 0 0 2 Ribosome 1 0.500247674133682 1 0.999504651732636 hm5C_site_39670 DeepMRMD:1;iRNA_m5C:0.999504651732636 39671 chr18 46284699 46284699 1 + G A UCEC 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCAAGCGCATCGGGGAGCGG < 41bp 1 0.261351709508175 1 0.130231767892838 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284699 nonsynonymous SNV 0.036 1 24 hm5C_associated_SNPs_40425 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39671 DeepMRMD:1;iRNA_m5C:0.999536712157815 39672 chr9 130575571 130575571 1 + G A UCEC 130575587 + 130575567 130575607 41 GCCCGGACCTCTGGAGTGCCCCCAGCCCAGAGCCCGGTGGG GCCCAGACCTCTGGAGTGCCCCCAGCCCAGAGCCCGGTGGG < 41bp 1 0.552443906227176 1 0.263598680496216 experiment 0.895112187545649 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FPGS ENSG00000136877 CDS Human protein_coding chr9:130575587 chr9:130575571 synonymous SNV . 0 5 hm5C_associated_SNPs_40426 0 0 0 0 1 Cytosol 1 0.500232625388624 1 0.999534749222752 hm5C_site_39672 DeepMRMD:1;iRNA_m5C:0.999534749222752 39673 chr5 137756543 137756543 1 + C T UCEC 137756528 + 137756508 137756548 41 CTGTTGCTGGGTCCCACTGCCTCCAACAACAAAACCGAAGG CTGTTGCTGGGTCCCACTGCCTCCAACAACAAAACTGAAGG < 41bp 1 0.615989136826115 1 0.960862159729004 experiment 0.768021726347769 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KDM3B ENSG00000120733 CDS Human protein_coding chr5:137756528 chr5:137756543 synonymous SNV . 0 36 hm5C_associated_SNPs_40427 0 0 1 0 0 Nucleus 1 0.500231652506342 0.078275680541992 0.999536694987315 hm5C_site_39673 DeepMRMD:0.078275680541992;iRNA_m5C:0.999536694987315 39674 chr8 145166354 145166354 1 + C T UCEC 145166334 + 145166314 145166354 41 TGTCCCTGTTTGCAGCGAGGCCTTGTCTCTCATCCATCGTC TGTCCCTGTTTGCAGCGAGGCCTTGTCTCTCATCCATCGTT < 41bp 1 0.0196379258401963 1 0.0242067873477936 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166334 chr8:145166354 nonsynonymous SNV 0.000 1 41 hm5C_associated_SNPs_40428 0 0 1 1 0 chromatin 1 0.50023152342507 1 0.999536953149861 hm5C_site_39674 DeepMRMD:1;iRNA_m5C:0.999536953149861 39675 chr8 145166354 145166354 1 + C T UCEC 145166335 + 145166315 145166355 41 GTCCCTGTTTGCAGCGAGGCCTTGTCTCTCATCCATCGTCG GTCCCTGTTTGCAGCGAGGCCTTGTCTCTCATCCATCGTTG < 41bp 1 0.189185872441953 1 0.0342593789100647 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166335 chr8:145166354 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_40429 0 0 1 1 0 chromatin 1 0.500231644070215 1 0.999536711859569 hm5C_site_39675 DeepMRMD:1;iRNA_m5C:0.999536711859569 39676 chr8 145166354 145166354 1 + C T UCEC 145166367 + 145166347 145166387 41 CCATCGTCGGAGGGCAACATCTCAGCACCTGGTGCCGAAGG CCATCGTTGGAGGGCAACATCTCAGCACCTGGTGCCGAAGG < 41bp 1 0.494008231401671 1 0.486054748296738 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166367 chr8:145166354 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_40430 0 0 1 1 0 chromatin 1 0.500231643926591 1 0.999536712146817 hm5C_site_39676 DeepMRMD:1;iRNA_m5C:0.999536712146817 39677 chr8 145166354 145166354 1 + C T UCEC 145166369 + 145166349 145166389 41 ATCGTCGGAGGGCAACATCTCAGCACCTGGTGCCGAAGGAG ATCGTTGGAGGGCAACATCTCAGCACCTGGTGCCGAAGGAG < 41bp 1 0.649559953258314 1 0.768209099769592 experiment 0.700880093483372 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166369 chr8:145166354 nonsynonymous SNV 0.000 1 6 hm5C_associated_SNPs_40431 0 0 1 1 0 chromatin 1 0.500231643944755 0.463581800460816 0.999536712110491 hm5C_site_39677 DeepMRMD:0.463581800460816;iRNA_m5C:0.999536712110491 39678 chrX 69699038 69699038 1 + G A UCEC 69699058 + 69699038 69699078 41 GAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGGGTC AAACAAATGATGAACAGCAGCATGAGCTCTGGGTCTGGGTC < 41bp 1 0.40131496208458 1 0.231824815273285 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLG3 ENSG00000082458 CDS Human protein_coding chrX:69699058 chrX:69699038 nonsynonymous SNV 0.998 3 1 hm5C_associated_SNPs_40432 0 0 1 0 2 Ribosome 1 0.500232388138928 1 0.999535223722144 hm5C_site_39678 DeepMRMD:1;iRNA_m5C:0.999535223722144 39679 chr11 123989011 123989011 1 + C T UCEC 123989020 + 123989000 123989040 41 CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATGTGC CCAACCTGGGTTGAAGGCGGCAGTCACCCTGAAGTATGTGC < 41bp 1 0.135027959407955 1 0.19742226600647 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VWA5A ENSG00000110002 CDS Human protein_coding chr11:123989020 chr11:123989011 nonsynonymous SNV 0.323 2 12 hm5C_associated_SNPs_40433 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39679 DeepMRMD:1;iRNA_m5C:0.999536712157815 39680 chr9 35385731 35385731 1 + C T UCEC 35385748 + 35385728 35385768 41 TCCCTGCTGGGAGTCCTGAACGGCTTCAGGACTTAAAATCC TCCTTGCTGGGAGTCCTGAACGGCTTCAGGACTTAAAATCC < 41bp 1 0.381861893543254 1 0.560814321041107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNC13B ENSG00000198722 CDS Human protein_coding chr9:35385748 chr9:35385731 nonsynonymous SNV 1.000 5 4 hm5C_associated_SNPs_40434 0 0 0 0 2 Cytosol 1 0.500231643408672 0.878371357917786 0.999536713182657 hm5C_site_39680 DeepMRMD:0.878371357917786;iRNA_m5C:0.999536713182657 39681 chr9 137323821 137323821 1 + G A UCEC 137323830 + 137323810 137323850 41 GCTGCCTGCGCGCCATCGTCCTCTTTAACCCTGGTATGGCC GCTGCCTGCGCACCATCGTCCTCTTTAACCCTGGTATGGCC < 41bp 1 0.078593389067754 1 0.217974811792374 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RXRA ENSG00000186350 CDS Human protein_coding chr9:137323830 chr9:137323821 nonsynonymous SNV 0.835 3 12 hm5C_associated_SNPs_40435 0 0 1 0 1 Cytosol 1 0.500231646281954 1 0.999536707436092 hm5C_site_39681 DeepMRMD:1;iRNA_m5C:0.999536707436092 39682 chr1 36026171 36026171 1 + G A UCEC 36026179 + 36026159 36026199 41 TCCTCACAGCCCGGGGGGACCCGGACGATGCTGCCCGCCGC TCCTCACAGCCCAGGGGGACCCGGACGATGCTGCCCGCCGC < 41bp 1 0.693946402434391 1 0.767261028289795 experiment 0.612107195131219 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NCDN ENSG00000020129 CDS Human protein_coding chr1:36026179 chr1:36026171 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_40436 0 0 1 0 0 Endoplasmic reticulum 1 0.500231645006807 0.46547794342041 0.999536709986387 hm5C_site_39682 DeepMRMD:0.46547794342041;iRNA_m5C:0.999536709986387 39683 chr17 8172163 8172163 1 + C T UCEC 8172177 + 8172157 8172197 41 GGAGTGCGCACGGGGAAGGTCAGGCCCAAGGAAGGCTGGGG GGAGTGTGCACGGGGAAGGTCAGGCCCAAGGAAGGCTGGGG < 41bp 1 0.523639284238333 1 0.774538099765778 experiment 0.952721431523334 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PFAS ENSG00000178921 CDS Human protein_coding chr17:8172177 chr17:8172163 nonsynonymous SNV 0.146 4 7 hm5C_associated_SNPs_40437 0 0 1 0 1 Nucleus 1 0.500231643921092 0.450923800468444 0.999536712157815 hm5C_site_39683 DeepMRMD:0.450923800468444;iRNA_m5C:0.999536712157815 39684 chr16 12618642 12618642 1 + C T UCEC 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCTGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.165305617779255 1 0.259596168994904 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618642 synonymous SNV . 0 4 hm5C_associated_SNPs_40439 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39684 DeepMRMD:1;iRNA_m5C:0.999536712157815 39685 chr19 18960987 18960987 1 + C T UCEC 18961004 + 18960984 18961024 41 TGTCGCAACGTCTTCCTCCTCGGCTTCATCCCGGCCAAAGC TGTTGCAACGTCTTCCTCCTCGGCTTCATCCCGGCCAAAGC < 41bp 1 0.601534915336552 1 0.820359945297241 experiment 0.796930169326896 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18961004 chr19:18960987 nonsynonymous SNV 0.996 5 4 hm5C_associated_SNPs_40440 0 0 1 0 1 Nucleus 1 0.500247709661809 0.359280109405518 0.999504580676382 hm5C_site_39685 DeepMRMD:0.359280109405518;iRNA_m5C:0.999504580676382 39686 chr15 75190031 75190031 1 + C T UCEC 75190039 + 75190019 75190059 41 AGCTTACTGAGCCGAAGGACCTGCTGATATTCCGTGCCTGC AGCTTACTGAGCTGAAGGACCTGCTGATATTCCGTGCCTGC < 41bp 1 0.602907386196278 1 0.0920759439468384 experiment 0.794185227607445 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MPI ENSG00000178802 CDS Human protein_coding chr15:75190039 chr15:75190031 nonsynonymous SNV 0.369 1 13 hm5C_associated_SNPs_40442 0 0 1 2 0 Ribosome 1 0.500231644095862 1 0.999536711808275 hm5C_site_39686 DeepMRMD:1;iRNA_m5C:0.999536711808275 39687 chr7 36445878 36445878 1 + G A UCEC 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCAGACCTCTGCTTTCAAATGCCTCAGCAACTCCAG < 41bp 1 0.598410452413032 1 0.440418154001236 experiment 0.803179095173935 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445878 synonymous SNV . 0 31 hm5C_associated_SNPs_40443 0 0 1 0 1 Nucleus 1 0.500231643913203 1 0.999536712173595 hm5C_site_39687 DeepMRMD:1;iRNA_m5C:0.999536712173595 39688 chr5 140789633 140789633 1 + C T UCEC 140789623 + 140789603 140789643 41 AGTGAGCCCGGACTCTTCAGCCTGGGGCTGCGCACTGGGGA AGTGAGCCCGGACTCTTCAGCCTGGGGCTGTGCACTGGGGA < 41bp 1 0.224558311071616 1 0.419680058956146 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHGB6 ENSG00000253305 CDS Human protein_coding chr5:140789623 chr5:140789633 nonsynonymous SNV 0.987 2 31 hm5C_associated_SNPs_40445 0 0 1 0 0 exosome 1 0.500231643921059 1 0.999536712157881 hm5C_site_39688 DeepMRMD:1;iRNA_m5C:0.999536712157881 39689 chr19 17213058 17213058 1 + G A UCEC 17213070 + 17213050 17213090 41 ATCTACACGTACGCGGGGAGCATCCTGGTGGCCATCAACCC ATCTACACATACGCGGGGAGCATCCTGGTGGCCATCAACCC < 41bp 1 0.0441979862248731 1 0.0499530136585236 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17213070 chr19:17213058 synonymous SNV . 0 9 hm5C_associated_SNPs_40446 0 0 1 0 0 Nucleus 1 0.500231643921056 1 0.999536712157888 hm5C_site_39689 DeepMRMD:1;iRNA_m5C:0.999536712157888 39690 chr5 82834292 82834292 1 + C A UCEC 82834308 + 82834288 82834328 41 CACTCTCCCACGTAGTCCTGCCTCTGTCTTTATGGAGCAGG CACTATCCCACGTAGTCCTGCCTCTGTCTTTATGGAGCAGG < 41bp 1 0.0200948490819461 1 0.0430594086647034 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82834308 chr5:82834292 nonsynonymous SNV 0.006 0 5 hm5C_associated_SNPs_40447 0 0 1 0 0 Ribosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_39690 DeepMRMD:1;iRNA_m5C:0.999536712157806 39691 chr12 124074935 124074935 1 + G A UCEC 124074928 + 124074908 124074948 41 AGAAATGATCAATGAGCTAGCAGTGGCGATGACAGCTGTAA AGAAATGATCAATGAGCTAGCAGTGGCAATGACAGCTGTAA < 41bp 1 0.619061278228202 1 0.238054186105728 experiment 0.761877443543596 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074928 chr12:124074935 synonymous SNV . 0 28 hm5C_associated_SNPs_40448 0 0 1 0 2 Ribosome 1 0.500231643950069 1 0.999536712099863 hm5C_site_39691 DeepMRMD:1;iRNA_m5C:0.999536712099863 39692 chr5 71618009 71618009 1 + C T UCEC 71617999 + 71617979 71618019 41 TTTCTTTCTCTGATTTTTAGCTAAAAGATACCTACTTACAG TTTCTTTCTCTGATTTTTAGCTAAAAGATATCTACTTACAG < 41bp 1 0.292717672059585 1 0.499842941761017 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71617999 chr5:71618009 synonymous SNV . 0 31 hm5C_associated_SNPs_40449 0 0 0 0 2 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_39692 DeepMRMD:1;iRNA_m5C:0.999536712157814 39693 chr11 63997020 63997020 1 + G A UCEC 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAA < 41bp 1 0.442946484921878 1 0.903941631317139 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63997020 nonsynonymous SNV 0.995 2 41 hm5C_associated_SNPs_40450 0 0 1 0 2 Ribosome 1 0.500231643592384 0.192116737365722 0.999536712815232 hm5C_site_39693 DeepMRMD:0.192116737365722;iRNA_m5C:0.999536712815232 39694 chr19 34949762 34949762 1 + C T UCEC 34949745 + 34949725 34949765 41 GCACTGGATCCTCCCAACCCCAATTGTTATGTATGTGCCAG GCACTGGATCCTCCCAACCCCAATTGTTATGTATGTGTCAG < 41bp 1 0.302759449701807 1 0.0615058541297913 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34949745 chr19:34949762 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_40451 0 0 1 0 2 Cytosol 1 0.500231643926199 1 0.999536712147603 hm5C_site_39694 DeepMRMD:1;iRNA_m5C:0.999536712147603 39695 chr19 13051182 13051182 1 + G T UCEC 13051171 + 13051151 13051191 41 TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAG TGGAAGACGATTGGGACTTCCTGCCACCCAATAAGATAAAG < 41bp 1 0.380070262726152 1 0.334476470947266 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051171 chr19:13051182 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_40452 0 0 1 0 1 Ribosome 1 0.500231643921392 1 0.999536712157216 hm5C_site_39695 DeepMRMD:1;iRNA_m5C:0.999536712157216 39696 chr19 13051182 13051182 1 + G T UCEC 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTCCTGCCACCCAATAAGATAAAGGATC < 41bp 1 0.330525988592263 1 0.236082434654236 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051182 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_40453 0 0 1 0 1 Ribosome 1 0.500231672147867 1 0.999536655704265 hm5C_site_39696 DeepMRMD:1;iRNA_m5C:0.999536655704265 39697 chr7 102995365 102995365 1 + G T UCEC 102995366 + 102995346 102995386 41 AAGTTGAAGATGACATTCAGCAACTTCTCAAGAAAATTAAT AAGTTGAAGATGACATTCATCAACTTCTCAAGAAAATTAAT < 41bp 1 0.36773899557017 1 0.206171542406082 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:102995366 chr7:102995365 nonsynonymous SNV 0.993 3 20 hm5C_associated_SNPs_40454 0 0 1 0 1 Ribosome 1 0.50023155103219 1 0.99953689793562 hm5C_site_39697 DeepMRMD:1;iRNA_m5C:0.99953689793562 39698 chr19 46025457 46025457 1 + C T UCEC 46025467 + 46025447 46025487 41 GCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGA GCACATAGAGTGCCGGGTCTCCAATGCAGGTGATGCTCAGA < 41bp 1 0.217327105596368 1 0.657998204231262 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025467 chr19:46025457 nonsynonymous SNV 0.864 3 11 hm5C_associated_SNPs_40456 0 0 1 0 2 Ribosome 1 0.500231643686356 0.684003591537476 0.999536712627288 hm5C_site_39698 DeepMRMD:0.684003591537476;iRNA_m5C:0.999536712627288 39699 chr19 46025457 46025457 1 + C T UCEC 46025468 + 46025448 46025488 41 CACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGAT CACATAGAGTGCCGGGTCTCCAATGCAGGTGATGCTCAGAT < 41bp 1 0.297558469539324 1 0.295038133859634 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025468 chr19:46025457 nonsynonymous SNV 0.864 3 10 hm5C_associated_SNPs_40457 0 0 1 0 2 Ribosome 1 0.500231647592101 1 0.999536704815798 hm5C_site_39699 DeepMRMD:1;iRNA_m5C:0.999536704815798 39700 chr1 7796548 7796548 1 + C A UCEC 7796544 + 7796524 7796564 41 TTCCGCGGAATGACCCTACTCCACCTGGCCGCTGCCCAGGG TTCCGCGGAATGACCCTACTCCACATGGCCGCTGCCCAGGG < 41bp 1 0.644925796533164 1 0.659603476524353 experiment 0.710148406933673 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMTA1 ENSG00000171735 CDS Human protein_coding chr1:7796544 chr1:7796548 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_40458 0 0 1 0 1 Cytosol 1 0.500231643921092 0.680793046951294 0.999536712157815 hm5C_site_39700 DeepMRMD:0.680793046951294;iRNA_m5C:0.999536712157815 39701 chr2 242430976 242430976 1 + C T UCEC 242430986 + 242430966 242431006 41 GAAGATGATGCTCGGGGTGTCCGCAGCTCCCTGGAGGGGCA GAAGATGATGTTCGGGGTGTCCGCAGCTCCCTGGAGGGGCA < 41bp 1 0.642636508718022 1 0.395992994308472 experiment 0.714726982563957 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242430986 chr2:242430976 nonsynonymous SNV 0.002 0 11 hm5C_associated_SNPs_40459 0 0 0 0 1 Nucleus 1 0.500231643974949 1 0.999536712050102 hm5C_site_39701 DeepMRMD:1;iRNA_m5C:0.999536712050102 39702 chr10 104160777 104160777 1 + C T UCEC 104160790 + 104160770 104160810 41 GGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA GGGTACCTGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA < 41bp 1 0.0590020246678362 1 0.122570902109146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160790 chr10:104160777 nonsynonymous SNV 0.105 3 8 hm5C_associated_SNPs_40460 0 0 1 0 2 chromatin 1 0.500231646762376 1 0.999536706475247 hm5C_site_39702 DeepMRMD:1;iRNA_m5C:0.999536706475247 39703 chr9 37486782 37486782 1 + G A UCEC 37486792 + 37486772 37486812 41 CCAACCCCAGGAAGAGGAATCAACGGATCCTGGTAAGTGAA CCAACCCCAGAAAGAGGAATCAACGGATCCTGGTAAGTGAA < 41bp 1 0.531228705325423 1 0.700987994670868 experiment 0.937542589349154 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37486792 chr9:37486782 synonymous SNV . 0 11 hm5C_associated_SNPs_40461 0 0 1 0 2 Ribosome 1 0.500231643929603 0.598024010658264 0.999536712140795 hm5C_site_39703 DeepMRMD:0.598024010658264;iRNA_m5C:0.999536712140795 39704 chr4 126372112 126372112 1 + G A UCEC 126372100 + 126372080 126372120 41 CTATTTTGAAATCTCAGAAGCAGCTCCTAAAGGTACTATTG CTATTTTGAAATCTCAGAAGCAGCTCCTAAAGATACTATTG < 41bp 1 0.0586310158297779 1 0.193082243204117 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126372100 chr4:126372112 nonsynonymous SNV 0.035 3 33 hm5C_associated_SNPs_40462 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643906189 1 0.999536712187623 hm5C_site_39704 DeepMRMD:1;iRNA_m5C:0.999536712187623 39705 chrX 215919 215919 1 + A C UCEC 215918 + 215898 215938 41 GGGCCGGGTTCACGGTGCACCAACATCATCGCGGGGGACTT GGGCCGGGTTCACGGTGCACCCACATCATCGCGGGGGACTT < 41bp 1 0.299823300637473 1 0.151651054620743 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:215918 chrX:215919 nonsynonymous SNV 0.250 4 22 hm5C_associated_SNPs_40463 0 0 1 0 0 Cytosol 1 0.500231645651148 1 0.999536708697703 hm5C_site_39705 DeepMRMD:1;iRNA_m5C:0.999536708697703 39706 chrX 73041049 73041049 1 + C T UCEC 73041069 - 73041049 73041089 41 AGTATGATTGGTGGAGGGAGCAAGGTTGAAGATAATCTGGG AGTATGATTGGTGGAGGGAGCAAGGTTGAAGATAATCTGGA < 41bp 1 0.423006435881177 1 0.866894125938416 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041069 chrX:73041049 . . 0 41 hm5C_associated_SNPs_40464 0 0 1 0 0 unknown 1 0.500231643934029 0.266211748123168 0.999536712131942 hm5C_site_39706 DeepMRMD:0.266211748123168;iRNA_m5C:0.999536712131942 39707 chr1 32626270 32626270 1 + G A UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACATCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA < 41bp 1 0.151180807237093 1 0.515235185623169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626270 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_40466 0 0 1 0 3 Cytosol 1 0.500230988903084 0.969529628753662 0.999538022193831 hm5C_site_39707 DeepMRMD:0.969529628753662;iRNA_m5C:0.999538022193831 39708 chr6 160477510 160477510 1 + A G UCEC 160477524 + 160477504 160477544 41 CTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAACGAC CTGTGGGACACAGAGGCTGCCTGTCCCATTCAGACAACGAC < 41bp 1 0.0339478267160762 1 0.0927111208438873 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160477524 chr6:160477510 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_40467 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920766 1 0.999536712158468 hm5C_site_39708 DeepMRMD:1;iRNA_m5C:0.999536712158468 39709 chr17 48148791 48148791 1 + G A UCEC 48148790 + 48148770 48148810 41 TTGCTGAGCCAGGAGGCAGGCGGAGACCTGCGGAGGAGGCA TTGCTGAGCCAGGAGGCAGGCAGAGACCTGCGGAGGAGGCA < 41bp 1 0.467245714494234 1 0.784724652767181 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48148790 chr17:48148791 nonsynonymous SNV 0.901 1 22 hm5C_associated_SNPs_40468 0 0 0 0 1 Cytosol 1 0.500231643921092 0.430550694465638 0.999536712157815 hm5C_site_39709 DeepMRMD:0.430550694465638;iRNA_m5C:0.999536712157815 39710 chr7 101891775 101891775 1 + C T UCEC 101891755 + 101891735 101891775 41 GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGC GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGT < 41bp 1 0.592622786353463 1 0.725315749645233 experiment 0.814754427293074 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891755 chr7:101891775 nonsynonymous SNV 0.753 1 41 hm5C_associated_SNPs_40469 0 0 1 0 1 Exosome 1 0.500231643921092 0.549368500709534 0.999536712157815 hm5C_site_39710 DeepMRMD:0.549368500709534;iRNA_m5C:0.999536712157815 39711 chr7 101891775 101891775 1 + C T UCEC 101891757 + 101891737 101891777 41 GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCC GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGTCC < 41bp 1 0.323822489140076 1 0.615172863006592 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891757 chr7:101891775 nonsynonymous SNV 0.753 1 39 hm5C_associated_SNPs_40470 0 0 1 0 1 Exosome 1 0.500231352538443 0.769654273986816 0.999537294923114 hm5C_site_39711 DeepMRMD:0.769654273986816;iRNA_m5C:0.999537294923114 39712 chr7 101891775 101891775 1 + C T UCEC 101891758 + 101891738 101891778 41 AGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCCG AGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGTCCG < 41bp 1 0.652264352385818 1 0.738117098808289 experiment 0.695471295228363 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891758 chr7:101891775 nonsynonymous SNV 0.753 1 38 hm5C_associated_SNPs_40471 0 0 1 0 1 Exosome 1 0.500231643941111 0.523765802383422 0.999536712117777 hm5C_site_39712 DeepMRMD:0.523765802383422;iRNA_m5C:0.999536712117777 39713 chr19 16957826 16957826 1 + G A UCEC 16957840 + 16957820 16957860 41 ATGTCTGAAGAGGAGGTGTTCACCGAGGTGGCCAACCTCTT ATGTCTAAAGAGGAGGTGTTCACCGAGGTGGCCAACCTCTT < 41bp 1 0.626164992190361 1 0.0892076790332794 experiment 0.747670015619278 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16957840 chr19:16957826 nonsynonymous SNV 0.986 4 7 hm5C_associated_SNPs_40472 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39713 DeepMRMD:1;iRNA_m5C:0.999536712157815 39714 chr17 73814847 73814847 1 + C T UCEC 73814827 + 73814807 73814847 41 CCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGC CCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGT < 41bp 1 0.686394906199335 1 0.435654550790787 experiment 0.627210187601331 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814827 chr17:73814847 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_40473 0 0 0 0 1 Cytosol 1 0.500231643921071 1 0.999536712157858 hm5C_site_39714 DeepMRMD:1;iRNA_m5C:0.999536712157858 39715 chr17 73814847 73814847 1 + C T UCEC 73814851 + 73814831 73814871 41 GTCCCCGGCATGAATGCAAACGCTCTGCCCTTCTACCCCAC GTCCCCGGCATGAATGTAAACGCTCTGCCCTTCTACCCCAC < 41bp 1 0.416269104005462 1 0.253687620162964 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814851 chr17:73814847 nonsynonymous SNV 0.999 1 17 hm5C_associated_SNPs_40474 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39715 DeepMRMD:1;iRNA_m5C:0.999536712157815 39716 chr12 31244706 31244706 1 + G A UCEC 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCAG < 41bp 1 0.580839120111733 1 0.407399833202362 experiment 0.838321759776535 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244706 synonymous SNV . 0 40 hm5C_associated_SNPs_40475 0 0 1 0 2 Cytosol 1 0.500231637891426 1 0.999536724217148 hm5C_site_39716 DeepMRMD:1;iRNA_m5C:0.999536724217148 39717 chr12 31244706 31244706 1 + G A UCEC 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCAGGCAT < 41bp 1 0.223781684703242 1 0.0879677832126617 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244706 synonymous SNV . 0 36 hm5C_associated_SNPs_40476 0 0 1 0 2 Cytosol 1 0.500231645224627 1 0.999536709550746 hm5C_site_39717 DeepMRMD:1;iRNA_m5C:0.999536709550746 39718 chr11 67818122 67818122 1 + G A UCEC 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCAGC < 41bp 1 0.0353409385244024 1 0.530366957187653 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818122 nonsynonymous SNV 0.985 5 39 hm5C_associated_SNPs_40477 0 0 1 0 2 Nucleus 1 0.500231643921136 0.939266085624694 0.999536712157729 hm5C_site_39718 DeepMRMD:0.939266085624694;iRNA_m5C:0.999536712157729 39719 chr11 67818122 67818122 1 + G A UCEC 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCAGCT < 41bp 1 0.140801121905097 1 0.572798311710358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818122 nonsynonymous SNV 0.985 5 38 hm5C_associated_SNPs_40478 0 0 1 0 2 Nucleus 1 0.500231643924948 0.854403376579284 0.999536712150103 hm5C_site_39719 DeepMRMD:0.854403376579284;iRNA_m5C:0.999536712150103 39720 chr16 57486784 57486784 1 + C T UCEC 57486774 + 57486754 57486794 41 GTGAGGAGCAGTTGCAGCACCGCATCCTGACGGCAGCCCTT GTGAGGAGCAGTTGCAGCACCGCATCCTGATGGCAGCCCTT < 41bp 1 0.567949702770871 1 0.835696697235107 experiment 0.864100594458259 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486774 chr16:57486784 nonsynonymous SNV 0.992 2 31 hm5C_associated_SNPs_40479 0 0 1 0 2 Ribosome 1 0.500231643795871 0.328606605529786 0.999536712408258 hm5C_site_39720 DeepMRMD:0.328606605529786;iRNA_m5C:0.999536712408258 39721 chr1 46073351 46073351 1 + A G UCEC 46073334 + 46073314 46073354 41 CAGTTTCTGGAACTGATGTCCAAGAAGAGTGCAGAGAAAAA CAGTTTCTGGAACTGATGTCCAAGAAGAGTGCAGAGAGAAA < 41bp 1 0.6333465790391 1 0.777227640151978 experiment 0.7333068419218 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46073334 chr1:46073351 synonymous SNV . 0 38 hm5C_associated_SNPs_40480 0 0 1 0 0 Nucleus 1 0.500231642565405 0.445544719696044 0.999536714869191 hm5C_site_39721 DeepMRMD:0.445544719696044;iRNA_m5C:0.999536714869191 39722 chr16 16228273 16228273 1 + G A UCEC 16228293 + 16228273 16228313 41 GAGTCTGCCGAAGGAGAGATCATCATCGATGGCATCAACAT AAGTCTGCCGAAGGAGAGATCATCATCGATGGCATCAACAT < 41bp 1 0.309688603530286 1 0.0479081571102142 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16228293 chr16:16228273 nonsynonymous SNV 0.232 4 1 hm5C_associated_SNPs_40481 0 0 1 0 2 Mitochondrion 1 0.500230050054333 1 0.999539899891334 hm5C_site_39722 DeepMRMD:1;iRNA_m5C:0.999539899891334 39723 chr8 37630316 37630316 1 + G A UCEC 37630300 + 37630280 37630320 41 CAATCTCTTCATGCTGGAAACAGTGGATTCTGTGAAGTTGG CAATCTCTTCATGCTGGAAACAGTGGATTCTGTGAAATTGG < 41bp 1 0.38974052829615 1 0.36532798409462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLPBP ENSG00000147471 CDS Human protein_coding chr8:37630300 chr8:37630316 synonymous SNV . 0 37 hm5C_associated_SNPs_40482 0 0 1 0 1 unknown 1 0.500231643913805 1 0.99953671217239 hm5C_site_39723 DeepMRMD:1;iRNA_m5C:0.99953671217239 39724 chr2 27663359 27663359 1 + G T UCEC 27663350 + 27663330 27663370 41 TGGCTGAAATCCCTGCAGGACCAGGAAGAGAACCAGTTCAG TGGCTGAAATCCCTGCAGGACCAGGAAGATAACCAGTTCAG < 41bp 1 0.297396112177935 1 0.373118698596954 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663350 chr2:27663359 stopgain 1.000 1 30 hm5C_associated_SNPs_40483 0 0 1 0 2 Cytosol 1 0.500231628985158 1 0.999536742029684 hm5C_site_39724 DeepMRMD:1;iRNA_m5C:0.999536742029684 39725 chr19 48259044 48259044 1 + A C UCEC 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GCGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC < 41bp 1 0.288162272718929 1 0.0391319394111633 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259044 nonsynonymous SNV 0.912 2 2 hm5C_associated_SNPs_40484 0 0 1 0 2 unknown 1 0.500231653480174 1 0.999536693039652 hm5C_site_39725 DeepMRMD:1;iRNA_m5C:0.999536693039652 39726 chr2 224824286 224824286 1 + T C UCEC 224824275 + 224824255 224824295 41 GAGAAGCCGAACTGGGATTACCATGCAGAAATACAAGCTTT GAGAAGCCGAACTGGGATTACCATGCAGAAACACAAGCTTT < 41bp 1 0.144846422359802 1 0.11884731054306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824275 chr2:224824286 nonsynonymous SNV 0.992 1 32 hm5C_associated_SNPs_40485 0 0 1 0 1 Ribosome 1 0.500231650402663 1 0.999536699194674 hm5C_site_39726 DeepMRMD:1;iRNA_m5C:0.999536699194674 39727 chr14 75190034 75190034 1 + C T UCEC 75190025 + 75190005 75190045 41 CTGAAATTGAGAAATTGGGGCAGAAGTATCGAGTGGCTCTA CTGAAATTGAGAAATTGGGGCAGAAGTATTGAGTGGCTCTA < 41bp 1 0.691330869318754 1 0.318928927183151 experiment 0.617338261362493 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190025 chr14:75190034 stopgain 0.996 1 30 hm5C_associated_SNPs_40486 0 0 1 1 2 Nucleus 1 0.50023164392099 1 0.999536712158021 hm5C_site_39727 DeepMRMD:1;iRNA_m5C:0.999536712158021 39728 chr3 48506023 48506023 1 + C A UCEC 48506024 + 48506004 48506044 41 TGGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACT TGGTGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAACT < 41bp 1 0.435559684230533 1 0.146697968244553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506024 chr3:48506023 nonsynonymous SNV 0.133 0 20 hm5C_associated_SNPs_40487 0 0 1 0 2 chromatin 1 0.500232718835638 1 0.999534562328724 hm5C_site_39728 DeepMRMD:1;iRNA_m5C:0.999534562328724 39729 chr3 48506023 48506023 1 + C A UCEC 48506025 + 48506005 48506045 41 GGTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTG GGTGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAACTG < 41bp 1 0.320997948071216 1 0.0562755763530731 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506025 chr3:48506023 nonsynonymous SNV 0.133 0 19 hm5C_associated_SNPs_40488 0 0 1 0 2 chromatin 1 0.500231643921032 1 0.999536712157935 hm5C_site_39729 DeepMRMD:1;iRNA_m5C:0.999536712157935 39730 chr3 48506023 48506023 1 + C A UCEC 48506026 + 48506006 48506046 41 GTGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGC GTGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAACTGC < 41bp 1 0.372121591132674 1 0.128726005554199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506026 chr3:48506023 nonsynonymous SNV 0.133 0 18 hm5C_associated_SNPs_40489 0 0 1 0 2 chromatin 1 0.500231966633393 1 0.999536066733215 hm5C_site_39730 DeepMRMD:1;iRNA_m5C:0.999536066733215 39731 chr3 48506023 48506023 1 + C A UCEC 48506027 + 48506007 48506047 41 TGTGCAGAGCCCCTTGCCCCCAGTCACTGGCTCCAACTGCC TGTGCAGAGCCCCTTGACCCCAGTCACTGGCTCCAACTGCC < 41bp 1 0.27574128557978 1 0.106598377227783 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATRIP ENSG00000164053 CDS Human protein_coding chr3:48506027 chr3:48506023 nonsynonymous SNV 0.133 0 17 hm5C_associated_SNPs_40490 0 0 1 0 2 chromatin 1 0.500235119220357 1 0.999529761559286 hm5C_site_39731 DeepMRMD:1;iRNA_m5C:0.999529761559286 39732 chr11 61584162 61584162 1 + G A UCEC 61584155 + 61584135 61584175 41 CTCGCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGT CTCGCACCCTGAGCGCTGGGCCACCTCATCCCAGGTGAAGT < 41bp 1 0.0293820694260447 1 0.0584134459495544 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584155 chr11:61584162 synonymous SNV . 0 28 hm5C_associated_SNPs_40491 0 0 0 0 1 unknown 1 0.5002316439211 1 0.9995367121578 hm5C_site_39732 DeepMRMD:1;iRNA_m5C:0.9995367121578 39733 chr11 61584162 61584162 1 + G A UCEC 61584156 + 61584136 61584176 41 TCGCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTA TCGCACCCTGAGCGCTGGGCCACCTCATCCCAGGTGAAGTA < 41bp 1 0.218830199057035 1 0.0825475454330444 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584156 chr11:61584162 synonymous SNV . 0 27 hm5C_associated_SNPs_40492 0 0 0 0 1 unknown 1 0.500231643265497 1 0.999536713469005 hm5C_site_39733 DeepMRMD:1;iRNA_m5C:0.999536713469005 39734 chr11 61584162 61584162 1 + G A UCEC 61584158 + 61584138 61584178 41 GCACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGC GCACCCTGAGCGCTGGGCCACCTCATCCCAGGTGAAGTAGC < 41bp 1 0.139046299240566 1 0.034492552280426 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584158 chr11:61584162 synonymous SNV . 0 25 hm5C_associated_SNPs_40493 0 0 0 0 1 unknown 1 0.500231638498715 1 0.999536723002571 hm5C_site_39734 DeepMRMD:1;iRNA_m5C:0.999536723002571 39735 chr11 61584162 61584162 1 + G A UCEC 61584159 + 61584139 61584179 41 CACCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCG CACCCTGAGCGCTGGGCCACCTCATCCCAGGTGAAGTAGCG < 41bp 1 0.19769848762832 1 0.100741505622864 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584159 chr11:61584162 synonymous SNV . 0 24 hm5C_associated_SNPs_40494 0 0 0 0 1 unknown 1 0.500231643911452 1 0.999536712177096 hm5C_site_39735 DeepMRMD:1;iRNA_m5C:0.999536712177096 39736 chr11 61584162 61584162 1 + G A UCEC 61584161 + 61584141 61584181 41 CCCTGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCG CCCTGAGCGCTGGGCCACCTCATCCCAGGTGAAGTAGCGCG < 41bp 1 0.218345947098715 1 0.226583749055862 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584161 chr11:61584162 synonymous SNV . 0 22 hm5C_associated_SNPs_40495 0 0 0 0 1 unknown 1 0.500231643953124 1 0.999536712093752 hm5C_site_39736 DeepMRMD:1;iRNA_m5C:0.999536712093752 39737 chr11 61584162 61584162 1 + G A UCEC 61584164 + 61584144 61584184 41 TGAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGG TGAGCGCTGGGCCACCTCATCCCAGGTGAAGTAGCGCGGGG < 41bp 1 0.528033303202863 1 0.747684121131897 experiment 0.943933393594273 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584164 chr11:61584162 synonymous SNV . 0 19 hm5C_associated_SNPs_40496 0 0 0 0 1 unknown 1 0.500231643921092 0.504631757736206 0.999536712157815 hm5C_site_39737 DeepMRMD:0.504631757736206;iRNA_m5C:0.999536712157815 39738 chr11 61584162 61584162 1 + G A UCEC 61584165 + 61584145 61584185 41 GAGCGCTGGGCCACCTCGTCCCAGGTGAAGTAGCGCGGGGT GAGCGCTGGGCCACCTCATCCCAGGTGAAGTAGCGCGGGGT < 41bp 1 0.527763850798784 1 0.850486397743225 experiment 0.944472298402431 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FADS1;FADS2 ENSG00000134824;ENSG00000149485 CDS Human other chr11:61584165 chr11:61584162 synonymous SNV . 0 18 hm5C_associated_SNPs_40497 0 0 0 0 1 unknown 1 0.500231642864951 0.29902720451355 0.999536714270099 hm5C_site_39738 DeepMRMD:0.29902720451355;iRNA_m5C:0.999536714270099 39739 chrX 40996133 40996133 1 + T C UCEC 40996126 + 40996106 40996146 41 AGTTGTCCCAAGACTGGTTTCCACTTTTAGAACTTCTTGCC AGTTGTCCCAAGACTGGTTTCCACTTTCAGAACTTCTTGCC < 41bp 1 0.144684363359488 1 0.246008932590485 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:40996126 chrX:40996133 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_40498 0 0 1 0 1 Nucleus 1 0.500231643898855 1 0.999536712202291 hm5C_site_39739 DeepMRMD:1;iRNA_m5C:0.999536712202291 39740 chr10 43971249 43971249 1 + G A UCEC 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCCATACAGAGACATGATGCTGG < 41bp 1 0.366721963264375 1 0.173018515110016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971249 synonymous SNV . 0 22 hm5C_associated_SNPs_40499 0 0 0 0 2 exosome 1 0.500231645072305 1 0.99953670985539 hm5C_site_39740 DeepMRMD:1;iRNA_m5C:0.99953670985539 39741 chr1 120286620 120286620 1 + C T UCEC 120286600 + 120286580 120286620 41 CACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGAAGC CACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGAAGT < 41bp 1 0.312351715071715 1 0.199296563863754 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286600 chr1:120286620 nonsynonymous SNV 0.965 1 41 hm5C_associated_SNPs_40500 0 0 1 0 0 Ribosome 1 0.500231643884634 1 0.999536712230732 hm5C_site_39741 DeepMRMD:1;iRNA_m5C:0.999536712230732 39742 chr5 72182956 72182956 1 + C T UCEC 72182950 + 72182930 72182970 41 CAAATGTGTATCGTGATGAACTGCTGCCACATATTTTGCCC CAAATGTGTATCGTGATGAACTGCTGTCACATATTTTGCCC < 41bp 1 0.539658534960911 1 0.0916528701782227 experiment 0.920682930078179 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72182950 chr5:72182956 nonsynonymous SNV 0.932 2 27 hm5C_associated_SNPs_40501 0 0 1 0 2 Cytosol 1 0.500231637880715 1 0.999536724238571 hm5C_site_39742 DeepMRMD:1;iRNA_m5C:0.999536724238571 39743 chr11 125475564 125475564 1 + G A UCEC 125475549 + 125475529 125475569 41 GCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA GCCATCTTTTGCATGCTACTCACCTACTACATGTGAATCAA < 41bp 1 0.601276761122491 1 0.210974663496017 experiment 0.797446477755018 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125475549 chr11:125475564 stopgain 1.000 1 36 hm5C_associated_SNPs_40502 0 0 1 0 2 Endoplasmic reticulum 1 0.500230661386535 1 0.99953867722693 hm5C_site_39743 DeepMRMD:1;iRNA_m5C:0.99953867722693 39744 chr11 65826383 65826383 1 + G A UCEC 65826372 + 65826352 65826392 41 CGAGGGGTGTCCTCTGAGAGCTCTGGGGACCGGGAGAAAGA CGAGGGGTGTCCTCTGAGAGCTCTGGGGACCAGGAGAAAGA < 41bp 1 0.498826931849463 1 0.292611747980118 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826372 chr11:65826383 nonsynonymous SNV 0.993 0 32 hm5C_associated_SNPs_40503 0 0 1 0 1 Nucleus 1 0.500231643943595 1 0.99953671211281 hm5C_site_39744 DeepMRMD:1;iRNA_m5C:0.99953671211281 39745 chr11 65826383 65826383 1 + G A UCEC 65826381 + 65826361 65826401 41 TCCTCTGAGAGCTCTGGGGACCGGGAGAAAGACTCAACCCG TCCTCTGAGAGCTCTGGGGACCAGGAGAAAGACTCAACCCG < 41bp 1 0.44740257677714 1 0.408260345458984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65826381 chr11:65826383 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_40504 0 0 1 0 1 Nucleus 1 0.500231643974137 1 0.999536712051726 hm5C_site_39745 DeepMRMD:1;iRNA_m5C:0.999536712051726 39746 chrX 131202536 131202536 1 + T G UCEC 131202534 + 131202514 131202554 41 ACACAGATTAAAAGAAATACCTTTGTGGGAACTCCATTTTG ACACAGATTAAAAGAAATACCTGTGTGGGAACTCCATTTTG < 41bp 1 0.695114965206778 1 0.0476967096328735 experiment 0.609770069586444 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STK26 ENSG00000134602 CDS Human protein_coding chrX:131202534 chrX:131202536 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_40505 0 0 1 0 2 Ribosome 1 0.500231643858233 1 0.999536712283533 hm5C_site_39746 DeepMRMD:1;iRNA_m5C:0.999536712283533 39747 chr10 89474575 89474575 1 + A G UCEC 89474562 + 89474542 89474582 41 TCCTGAGCGTGTGCTTAAAACCAATTTGTCCACAGTGAGTG TCCTGAGCGTGTGCTTAAAACCAATTTGTCCACGGTGAGTG < 41bp 1 0.27819363088571 1 0.0625183284282684 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474562 chr10:89474575 synonymous SNV . 0 34 hm5C_associated_SNPs_40506 0 0 1 0 2 Cytosol 1 0.500231644107072 1 0.999536711785856 hm5C_site_39747 DeepMRMD:1;iRNA_m5C:0.999536711785856 39748 chr1 163306613 163306613 1 + C T UCEC 163306605 + 163306585 163306625 41 ATTCACTTCAGAGAAGCATGCCGTGAAACGTATATGGAATT ATTCACTTCAGAGAAGCATGCCGTGAAATGTATATGGAATT < 41bp 1 0.147031419747301 1 0.251870214939117 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUF2 ENSG00000143228 CDS Human protein_coding chr1:163306605 chr1:163306613 nonsynonymous SNV 0.949 2 29 hm5C_associated_SNPs_40508 0 0 1 0 2 Cytosol 1 0.500231467565532 1 0.999537064868936 hm5C_site_39748 DeepMRMD:1;iRNA_m5C:0.999537064868936 39749 chr17 1648483 1648483 1 + C T UCEC 1648475 + 1648455 1648495 41 CCCTTTCTCCACAGTTCTCCCCTGTGAGCGCCATGGAGCCC CCCTTTCTCCACAGTTCTCCCCTGTGAGTGCCATGGAGCCC < 41bp 1 0.131333673839482 1 0.0387519299983978 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1648475 chr17:1648483 synonymous SNV . 0 29 hm5C_associated_SNPs_40509 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643891452 1 0.999536712217095 hm5C_site_39749 DeepMRMD:1;iRNA_m5C:0.999536712217095 39750 chr8 143816758 143816758 1 + G A UCEC 143816777 + 143816757 143816797 41 AGCTGCCCGCTGATCTGCAGCACTGGATCTCCTACAACGAG AACTGCCCGCTGATCTGCAGCACTGGATCTCCTACAACGAG < 41bp 1 0.235357841596828 1 0.152596145868301 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THEM6 ENSG00000130193 CDS Human protein_coding chr8:143816777 chr8:143816758 nonsynonymous SNV . 0 2 hm5C_associated_SNPs_40510 0 0 1 0 1 Ribosome 1 0.500231643925542 1 0.999536712148916 hm5C_site_39750 DeepMRMD:1;iRNA_m5C:0.999536712148916 39751 chr5 176468188 176468188 1 + C A UCEC 176468185 + 176468165 176468205 41 AACACCCAGTGTAAGGTTTGCTGCGCCTTGCTTATTTCTGA AACACCCAGTGTAAGGTTTGCTGAGCCTTGCTTATTTCTGA < 41bp 1 0.419575102276875 1 0.10033392906189 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF346 ENSG00000113761 CDS Human protein_coding chr5:176468185 chr5:176468188 stopgain 0.966 1 24 hm5C_associated_SNPs_40511 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_39751 DeepMRMD:1;iRNA_m5C:0.999536712157815 39752 chr1 46977849 46977849 1 + A G UCEC 46977851 + 46977831 46977871 41 CAGCACATGGCGGCCACCAACAACCTGGTGCACTACTCGTC CAGCACATGGCGGCCACCGACAACCTGGTGCACTACTCGTC < 41bp 1 0.430249836139115 1 0.123815387487411 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46977851 chr1:46977849 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_40512 0 0 0 0 0 nucleolus 1 0.500230611792026 1 0.999538776415948 hm5C_site_39752 DeepMRMD:1;iRNA_m5C:0.999538776415948 39753 chrX 47030522 47030522 1 + C T UCEC 47030525 + 47030505 47030545 41 CCAGGCTTCCCCCGAGACGGCGACTATCGGGACCAGGACTA CCAGGCTTCCCCCGAGATGGCGACTATCGGGACCAGGACTA < 41bp 1 0.6214891055193 1 0.283570945262909 experiment 0.757021788961399 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030525 chrX:47030522 synonymous SNV . 0 18 hm5C_associated_SNPs_40513 0 0 1 0 2 Ribosome 1 0.500231643921508 1 0.999536712156985 hm5C_site_39753 DeepMRMD:1;iRNA_m5C:0.999536712156985 39754 chr10 134981013 134981013 1 + C T UCEC 134980995 + 134980975 134981015 41 TCCATGCGGAGCGTGGCCCACGCCGCCATCTTCCAGAGCCT TCCATGCGGAGCGTGGCCCACGCCGCCATCTTCCAGAGTCT < 41bp 1 0.401024124076063 1 0.238197922706604 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:134980995 chr10:134981013 synonymous SNV . 0 39 hm5C_associated_SNPs_40514 0 0 0 0 1 Endoplasmic reticulum 1 0.500231733687053 1 0.999536532625894 hm5C_site_39754 DeepMRMD:1;iRNA_m5C:0.999536532625894 39755 chr11 86518803 86518803 1 + G A UCEC 86518805 + 86518785 86518825 41 GCATACCGCCTCCCTGTCGTCTTGCCCCAGTCTACCCTCAA GCATACCGCCTCCCTGTCATCTTGCCCCAGTCTACCCTCAA < 41bp 1 0.314107596696753 1 0.322710365056992 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRSS23 ENSG00000150687 CDS Human protein_coding chr11:86518805 chr11:86518803 nonsynonymous SNV 0.987 0 19 hm5C_associated_SNPs_40515 0 0 1 0 0 Ribosome 1 0.500231653289287 1 0.999536693421426 hm5C_site_39755 DeepMRMD:1;iRNA_m5C:0.999536693421426 39756 chr1 249211785 249211785 1 + T C UCEC 249211767 + 249211747 249211787 41 AGGAGCTTGGATCTAGGAGGCAGTATGGTAATAAAATTTGT AGGAGCTTGGATCTAGGAGGCAGTATGGTAATAAAATTCGT < 41bp 1 0.557161066209822 1 0.428251832723618 experiment 0.885677867580357 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249211767 chr1:249211785 synonymous SNV . 0 39 hm5C_associated_SNPs_40517 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39756 DeepMRMD:1;iRNA_m5C:0.999536712157815 39757 chrX 73046500 73046500 1 + G A UCEC 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAAGACTTGGGGAAATCCCAAGATGAGAACCCTAAAC < 41bp 1 0.601000578880284 1 0.49024111032486 experiment 0.797998842239431 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046500 . . 0 11 hm5C_associated_SNPs_40518 0 0 1 3 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_39757 DeepMRMD:1;iRNA_m5C:0.999536712157815 39758 chr6 43395797 43395797 1 + C T UCEC 43395795 + 43395775 43395815 41 GGGAGGGGGACACCACAGGCCACTGCTTCACCCAGCTGGTG GGGAGGGGGACACCACAGGCCATTGCTTCACCCAGCTGGTG < 41bp 1 0.166391389475093 1 0.0719229280948639 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43395795 chr6:43395797 synonymous SNV . 0 23 hm5C_associated_SNPs_40519 0 0 0 0 2 chromatin 1 0.5002316439661 1 0.9995367120678 hm5C_site_39758 DeepMRMD:1;iRNA_m5C:0.9995367120678 39759 chr3 113784189 113784189 1 + G A UCEC 113784180 + 113784160 113784200 41 ACCTGGGCAAAACAGGGGACCACACCATGGATATTCCAGGC ACCTGGGCAAAACAGGGGACCACACCATGAATATTCCAGGC < 41bp 1 0.249832242448683 1 0.170358449220657 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QTRT2 ENSG00000151576 CDS Human protein_coding chr3:113784180 chr3:113784189 nonsynonymous SNV 0.988 2 30 hm5C_associated_SNPs_40520 0 0 1 0 0 Nucleus 1 0.500231644942047 1 0.999536710115906 hm5C_site_39759 DeepMRMD:1;iRNA_m5C:0.999536710115906 39760 chr7 151818000 151818000 1 + C T UCEC 151818003 + 151817983 151818023 41 CTCGCTCATCAGACCCGCCACGGCTCATGAAATGCCACGGG CTCGCTCATCAGACCCGTCACGGCTCATGAAATGCCACGGG < 41bp 1 0.537722418914095 1 0.406164079904556 experiment 0.92455516217181 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818003 chr7:151818000 nonsynonymous SNV 0.974 4 18 hm5C_associated_SNPs_40521 0 0 1 0 2 chromatin 1 0.500231643919581 1 0.999536712160838 hm5C_site_39760 DeepMRMD:1;iRNA_m5C:0.999536712160838 39761 chr3 58109018 58109018 1 + G A UCEC 58109014 + 58108994 58109034 41 CCCACAAAACCCGGGGAGTACTTCGTCAACATCCTCTTTGA CCCACAAAACCCGGGGAGTACTTCATCAACATCCTCTTTGA < 41bp 1 0.322667724043876 1 0.348004639148712 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58109014 chr3:58109018 nonsynonymous SNV 0.929 4 25 hm5C_associated_SNPs_40522 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_39761 DeepMRMD:1;iRNA_m5C:0.999536712157815 39762 chr7 66703393 66703393 1 + C T UCEC 66703395 + 66703375 66703415 41 TGGATCAAAAACGTTCAGCGCAAAGGATTATATGGCCAGAA TGGATCAAAAACGTTCAGTGCAAAGGATTATATGGCCAGAA < 41bp 1 0.354345384357555 1 0.109589666128159 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66703395 chr7:66703393 synonymous SNV . 0 19 hm5C_associated_SNPs_40523 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921439 1 0.999536712157123 hm5C_site_39762 DeepMRMD:1;iRNA_m5C:0.999536712157123 39763 chr15 99673013 99673013 1 + G A UCEC 99673023 + 99673003 99673043 41 GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGC GGAGCTCTCGATGTGTCTGACCGTGGTTCCTGGAGAGACGC < 41bp 1 0.229597514100491 1 0.0487443804740906 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99673023 chr15:99673013 nonsynonymous SNV 0.002 1 11 hm5C_associated_SNPs_40524 0 0 1 0 1 exosome 1 0.500231862117571 1 0.999536275764857 hm5C_site_39763 DeepMRMD:1;iRNA_m5C:0.999536275764857 39764 chr20 60882672 60882672 1 + C T UCEC 60882662 + 60882642 60882682 41 CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGCGGTCACCCCG CTCTTCGCAGCTCCCGGAGCCAGTCGGCAGTGGTCACCCCG < 41bp 1 0.278598634030778 1 0.566186249256134 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882662 chr20:60882672 nonsynonymous SNV 0.837 1 31 hm5C_associated_SNPs_40526 0 0 1 0 1 Ribosome 1 0.500231643913225 0.867627501487732 0.999536712173549 hm5C_site_39764 DeepMRMD:0.867627501487732;iRNA_m5C:0.999536712173549 39765 chr1 166818716 166818716 1 + G T UCEC 166818712 + 166818692 166818732 41 CGCCCAGGAAATGAACATTCCAGAGAAAGGGTTCAAGGCAA CGCCCAGGAAATGAACATTCCAGATAAAGGGTTCAAGGCAA < 41bp 1 0.399964220226135 1 0.296036660671234 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POGK ENSG00000143157 CDS Human protein_coding chr1:166818712 chr1:166818716 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_40527 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39765 DeepMRMD:1;iRNA_m5C:0.999536712157815 39766 chr1 155106005 155106005 1 + C T UCEC 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGAAGACTGCTGCTTGAGGTTGAAGGT < 41bp 1 0.393152699033394 1 0.240842342376709 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106005 nonsynonymous SNV 0.899 2 22 hm5C_associated_SNPs_40528 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921134 1 0.999536712157731 hm5C_site_39766 DeepMRMD:1;iRNA_m5C:0.999536712157731 39767 chr19 4323379 4323379 1 + A T UCEC 4323383 + 4323363 4323403 41 ATGCCCGCACCAAACAAGTGCTGCACACTTTCAAGACCAGG ATGCCCGCACCAAACATGTGCTGCACACTTTCAAGACCAGG < 41bp 1 0.370017120236558 1 0.125342160463333 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323383 chr19:4323379 nonsynonymous SNV 0.653 2 17 hm5C_associated_SNPs_40529 0 0 1 0 2 cytosol 1 0.500231236656973 1 0.999537526686055 hm5C_site_39767 DeepMRMD:1;iRNA_m5C:0.999537526686055 39768 chr16 31470903 31470903 1 + G A UCEC 31470910 + 31470890 31470930 41 CCTCGCGCAGCTCGCGGCGGCGGCCGGGGAGGCTCTGGGTG CCTCGCGCAGCTCACGGCGGCGGCCGGGGAGGCTCTGGGTG < 41bp 1 0.396930014915487 1 0.581908822059631 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31470910 chr16:31470903 nonsynonymous SNV 0.992 0 14 hm5C_associated_SNPs_40531 0 0 1 0 0 cytosol 1 0.500231643921092 0.836182355880738 0.999536712157815 hm5C_site_39768 DeepMRMD:0.836182355880738;iRNA_m5C:0.999536712157815 39769 chr11 63994331 63994331 1 + G A UCEC 63994351 + 63994331 63994371 41 GCCTATTGGCTCTCGGGGGCCACAGCTGCTCCTGCGCCTGG ACCTATTGGCTCTCGGGGGCCACAGCTGCTCCTGCGCCTGG < 41bp 1 0.583894629955702 1 0.198067933320999 experiment 0.832210740088596 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63994351 chr11:63994331 synonymous SNV . 0 1 hm5C_associated_SNPs_40532 0 0 0 0 0 Ribosome 1 0.500231643943513 1 0.999536712112973 hm5C_site_39769 DeepMRMD:1;iRNA_m5C:0.999536712112973 39770 chr1 110034127 110034127 1 + C T UCEC 110034134 + 110034114 110034154 41 TCAGCTGGAGAACCGGGGAGCAGCTGGACACCCAGCCAAGG TCAGCTGGAGAACTGGGGAGCAGCTGGACACCCAGCCAAGG < 41bp 1 0.415960409367245 1 0.463774025440216 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110034134 chr1:110034127 nonsynonymous SNV 0.990 2 14 hm5C_associated_SNPs_40533 0 0 0 0 0 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_39770 DeepMRMD:1;iRNA_m5C:0.999536712157815 39771 chr13 113729374 113729374 1 + C A UCEC 113729386 + 113729366 113729406 41 AACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCA AACAAGCAATACGCGGTAGACTCCATCCGCCCAAAGTGCCA < 41bp 1 0.682304289774442 1 0.90852278470993 experiment 0.635391420451115 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113729386 chr13:113729374 nonsynonymous SNV 0.805 4 9 hm5C_associated_SNPs_40534 0 0 1 0 1 Cytosol 1 0.50062717545085 0.18295443058014 0.998745649098301 hm5C_site_39771 DeepMRMD:0.18295443058014;iRNA_m5C:0.998745649098301 39772 chr17 46189986 46189986 1 + C A UCEC 46189985 + 46189965 46190005 41 CCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT CCGAGTGCAGAATGAGGGCTCATGGAACTCTTATGTGGATT < 41bp 1 0.326981322980603 1 0.150201082229614 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 CDS Human protein_coding chr17:46189985 chr17:46189986 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_40535 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39772 DeepMRMD:1;iRNA_m5C:0.999536712157815 39773 chr1 44058258 44058258 1 + G A UCEC 44058240 + 44058220 44058260 41 TATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCGCA TATGGGGGTGGGCGTCTTCACCCCCACCATTGAGGCCCACA < 41bp 1 0.143604892434497 1 0.0921421349048615 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44058240 chr1:44058258 nonsynonymous SNV 0.998 3 39 hm5C_associated_SNPs_40537 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_39773 DeepMRMD:1;iRNA_m5C:0.999536712157815 39774 chr14 24646064 24646064 1 + C T UCEC 24646055 + 24646035 24646075 41 GATTCCGGTCACTGTGCTGCCACCTGAGGCCATCACGATCC GATTCCGGTCACTGTGCTGCCACCTGAGGTCATCACGATCC < 41bp 1 0.571620290562792 1 0.115216910839081 experiment 0.856759418874417 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control REC8 ENSG00000100918 CDS Human protein_coding chr14:24646055 chr14:24646064 nonsynonymous SNV 0.189 0 30 hm5C_associated_SNPs_40539 0 0 1 0 2 chromatin 1 0.500231644057874 1 0.999536711884253 hm5C_site_39774 DeepMRMD:1;iRNA_m5C:0.999536711884253 Blood protein levels 39775 chr6 74475660 74475660 1 + T C UCEC 74475665 + 74475645 74475685 41 ACCATTAGGTGAAGGTAACTCGTGCTGATGGCAACCAACTG ACCATTAGGTGAAGGCAACTCGTGCTGATGGCAACCAACTG < 41bp 1 0.267017554055755 1 0.474704176187515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD109 ENSG00000156535 CDS Human protein_coding chr6:74475665 chr6:74475660 nonsynonymous SNV 0.974 2 16 hm5C_associated_SNPs_40540 0 0 0 0 1 Ribosome 1 0.500231157291771 1 0.999537685416458 hm5C_site_39775 DeepMRMD:1;iRNA_m5C:0.999537685416458 39776 chr2 238666106 238666106 1 + G A UCEC 238666104 + 238666084 238666124 41 TGTTCCTTTCCTCAGGAAATCCGACAGCTACAGCAGAAACA TGTTCCTTTCCTCAGGAAATCCAACAGCTACAGCAGAAACA < 41bp 1 0.017330678361593 1 0.196132719516754 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238666104 chr2:238666106 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_40541 0 0 0 0 2 Ribosome 1 0.500231643922619 1 0.999536712154763 hm5C_site_39776 DeepMRMD:1;iRNA_m5C:0.999536712154763 39777 chr17 38610261 38610261 1 + T C UCEC 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCCGCTTCACAGAGCCGCACCCACGAGGACCTCCACATCAT < 41bp 1 0.332124496018242 1 0.111516296863556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610261 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_40542 0 0 1 0 2 Nucleus 1 0.500231643915569 1 0.999536712168863 hm5C_site_39777 DeepMRMD:1;iRNA_m5C:0.999536712168863 39778 chr11 65780813 65780813 1 + T G UCEC 65780832 + 65780812 65780852 41 CTTGTGGTTCCCTGGCAGAACTCCTCTCAGCTCCTAAAGCA CGTGTGGTTCCCTGGCAGAACTCCTCTCAGCTCCTAAAGCA < 41bp 1 0.422668546331714 1 0.158261805772781 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CST6 ENSG00000175315 CDS Human protein_coding chr11:65780832 chr11:65780813 nonsynonymous SNV 0.407 3 2 hm5C_associated_SNPs_40543 0 0 0 0 1 Cytosol 1 0.500231643920438 1 0.999536712159125 hm5C_site_39778 DeepMRMD:1;iRNA_m5C:0.999536712159125 39779 chr10 31812932 31812932 1 + G A UCEC 31812931 + 31812911 31812951 41 GAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGA GAATGACTCTGATTCTACACCACCCAAAAAGAAAATGCGGA < 41bp 1 0.210106762717115 1 0.155161619186401 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812931 chr10:31812932 synonymous SNV . 0 22 hm5C_associated_SNPs_40544 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_39779 DeepMRMD:1;iRNA_m5C:0.999536712157814 39780 chr2 27459289 27459289 1 + T C UCEC 27459284 + 27459264 27459304 41 CAATGCGTGGAGCTGGGGGCCGGCGTCTCTCTTCCTTTGTC CAATGCGTGGAGCTGGGGGCCGGCGCCTCTCTTCCTTTGTC < 41bp 1 0.424512629469591 1 0.774011850357056 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27459284 chr2:27459289 synonymous SNV . 0 26 hm5C_associated_SNPs_40545 0 0 1 0 0 Exosome 1 0.500231643921092 0.451976299285888 0.999536712157815 hm5C_site_39780 DeepMRMD:0.451976299285888;iRNA_m5C:0.999536712157815 39781 chr7 150034690 150034690 1 + T C UCEC 150034708 + 150034688 150034728 41 GGTACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCT GGCACTCAGCTCTGCGGGCCCCACCTCTTCCTTCGTCTTCT < 41bp 1 0.199029488099299 1 0.0322515368461609 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRRC61 ENSG00000127399 CDS Human protein_coding chr7:150034708 chr7:150034690 nonsynonymous SNV 0.093 0 3 hm5C_associated_SNPs_40546 0 0 1 0 0 Cytosol 1 0.500231643921299 1 0.999536712157401 hm5C_site_39781 DeepMRMD:1;iRNA_m5C:0.999536712157401 39782 chr5 137735600 137735600 1 + T C UCEC 137735614 + 137735594 137735634 41 GTGATGTGTGTGAAACAACTCTCTTCAACATCCACTGGGTT GTGATGCGTGTGAAACAACTCTCTTCAACATCCACTGGGTT < 41bp 1 0.138618304849949 1 0.0794868171215057 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137735614 chr5:137735600 nonsynonymous SNV 0.995 1 7 hm5C_associated_SNPs_40547 0 0 1 0 1 Nucleus 1 0.500231643629948 1 0.999536712740104 hm5C_site_39782 DeepMRMD:1;iRNA_m5C:0.999536712740104 39783 chr1 144014041 144014041 1 + C A UCEC 144014050 + 144014030 144014070 41 ACCTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGC ACCTGGAGAAGATGGCAGAACGCTTCCTGGCCAAGACATGC < 41bp 1 0.160981091075633 1 0.146836847066879 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014050 chr1:144014041 . 0.784 2 12 hm5C_associated_SNPs_40548 0 0 1 0 1 unknown 1 0.50023164395371 1 0.999536712092581 hm5C_site_39783 DeepMRMD:1;iRNA_m5C:0.999536712092581 39784 chr1 144014041 144014041 1 + C A UCEC 144014052 + 144014032 144014072 41 CTGGAGAAGCTGGCAGAACGCTTCCTGGCCAAGACATGCAG CTGGAGAAGATGGCAGAACGCTTCCTGGCCAAGACATGCAG < 41bp 1 0.215410607446465 1 0.368061393499374 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM72C;NBPF20 ENSG00000196369 ncRNA_exonic Human protein_coding chr1:144014052 chr1:144014041 . 0.784 2 10 hm5C_associated_SNPs_40549 0 0 1 0 1 unknown 1 0.500231651151313 1 0.999536697697375 hm5C_site_39784 DeepMRMD:1;iRNA_m5C:0.999536697697375 39785 chr9 100412787 100412787 1 + T C UCEC 100412789 + 100412769 100412809 41 TTGGTTTTCTTTCCAGGGTCCTGTCATGCCAGGGAGTCATT TTGGTTTTCTTTCCAGGGCCCTGTCATGCCAGGGAGTCATT < 41bp 1 0.0698898036873288 1 0.103167623281479 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100412789 chr9:100412787 synonymous SNV . 0 19 hm5C_associated_SNPs_40550 0 0 0 0 1 Nucleus 1 0.500231643921103 1 0.999536712157794 hm5C_site_39785 DeepMRMD:1;iRNA_m5C:0.999536712157794 39786 chr6 109484135 109484135 1 + A G UCEC 109484132 + 109484112 109484152 41 CAATACGAGTTCATAATCTTCAAATGAAATTGAGAAGAGAT CAATACGAGTTCATAATCTTCAAGTGAAATTGAGAAGAGAT < 41bp 1 0.419283872973916 1 0.356158912181854 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP57L1 ENSG00000183137 CDS Human protein_coding chr6:109484132 chr6:109484135 nonsynonymous SNV 0.853 0 24 hm5C_associated_SNPs_40551 0 0 0 0 0 chromatin 1 0.500231626990885 1 0.999536746018231 hm5C_site_39786 DeepMRMD:1;iRNA_m5C:0.999536746018231 39787 chr17 40842211 40842211 1 + A G UCEC 40842212 + 40842192 40842232 41 CTGAAGCCATTTGTAGTGTACTGTGATATCCGAGGTAAGTG CTGAAGCCATTTGTAGTGTGCTGTGATATCCGAGGTAAGTG < 41bp 1 0.19460196315874 1 0.0823725461959839 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40842212 chr17:40842211 nonsynonymous SNV 0.999 3 20 hm5C_associated_SNPs_40552 0 0 1 0 1 Cytosol 1 0.500231591107902 1 0.999536817784196 hm5C_site_39787 DeepMRMD:1;iRNA_m5C:0.999536817784196 39788 chr16 67671681 67671681 1 + C T UCEC 67671677 + 67671657 67671697 41 AAAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAG AAAAAGAGCCAGATGCTGAGCCCGTAGAGGGAGAGGAAGAG < 41bp 1 0.299900865032832 1 0.109221398830414 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671677 chr16:67671681 nonsynonymous SNV 0.099 0 25 hm5C_associated_SNPs_40553 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39788 DeepMRMD:1;iRNA_m5C:0.999536712157815 39789 chr16 67671681 67671681 1 + C T UCEC 67671678 + 67671658 67671698 41 AAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGG AAAAGAGCCAGATGCTGAGCCCGTAGAGGGAGAGGAAGAGG < 41bp 1 0.364585139161399 1 0.295470535755157 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671678 chr16:67671681 nonsynonymous SNV 0.099 0 24 hm5C_associated_SNPs_40554 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39789 DeepMRMD:1;iRNA_m5C:0.999536712157815 39790 chr16 67671681 67671681 1 + C T UCEC 67671679 + 67671659 67671699 41 AAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGA AAAGAGCCAGATGCTGAGCCCGTAGAGGGAGAGGAAGAGGA < 41bp 1 0.22657942647362 1 0.344040960073471 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671679 chr16:67671681 nonsynonymous SNV 0.099 0 23 hm5C_associated_SNPs_40555 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39790 DeepMRMD:1;iRNA_m5C:0.999536712157815 39791 chrX 69353952 69353952 1 + C T UCEC 69353956 + 69353936 69353976 41 GACCTCCTTGAGAAGGCTGCCGAAATGTTATCGCAGCTCGA GACCTCCTTGAGAAGGTTGCCGAAATGTTATCGCAGCTCGA < 41bp 1 0.573878048977264 1 0.745540738105774 experiment 0.852243902045472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69353956 chrX:69353952 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_40556 0 0 1 0 1 Cytosol 1 0.500232030573699 0.508918523788452 0.999535938852601 hm5C_site_39791 DeepMRMD:0.508918523788452;iRNA_m5C:0.999535938852601 39792 chrX 69353952 69353952 1 + C T UCEC 69353969 + 69353949 69353989 41 AGGCTGCCGAAATGTTATCGCAGCTCGACTTGTTCAGGTAT AGGTTGCCGAAATGTTATCGCAGCTCGACTTGTTCAGGTAT < 41bp 1 0.351502743504178 1 0.742224156856537 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69353969 chrX:69353952 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_40557 0 0 1 0 1 Cytosol 1 0.500231644877403 0.515551686286926 0.999536710245193 hm5C_site_39792 DeepMRMD:0.515551686286926;iRNA_m5C:0.999536710245193 39793 chr11 74329739 74329739 1 + C T UCEC 74329725 + 74329705 74329745 41 GACCACCAATGGTCATGGCCCACCTGCATCCAAGCAGGTTT GACCACCAATGGTCATGGCCCACCTGCATCCAAGTAGGTTT < 41bp 1 0.442579330493226 1 0.0242793262004852 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329725 chr11:74329739 stopgain 0.971 0 35 hm5C_associated_SNPs_40558 0 0 1 0 0 Nucleus 1 0.500231643921089 1 0.999536712157822 hm5C_site_39793 DeepMRMD:1;iRNA_m5C:0.999536712157822 39794 chr11 74329739 74329739 1 + C T UCEC 74329727 + 74329707 74329747 41 CCACCAATGGTCATGGCCCACCTGCATCCAAGCAGGTTTCC CCACCAATGGTCATGGCCCACCTGCATCCAAGTAGGTTTCC < 41bp 1 0.122083329019704 1 0.0572724938392639 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329727 chr11:74329739 stopgain 0.971 0 33 hm5C_associated_SNPs_40559 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_39794 DeepMRMD:1;iRNA_m5C:0.999536712157816 39795 chr11 74329739 74329739 1 + C T UCEC 74329731 + 74329711 74329751 41 CAATGGTCATGGCCCACCTGCATCCAAGCAGGTTTCCCAGC CAATGGTCATGGCCCACCTGCATCCAAGTAGGTTTCCCAGC < 41bp 1 0.134658392164968 1 0.14274537563324 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329731 chr11:74329739 stopgain 0.971 0 29 hm5C_associated_SNPs_40561 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39795 DeepMRMD:1;iRNA_m5C:0.999536712157815 39796 chr11 74329739 74329739 1 + C T UCEC 74329734 + 74329714 74329754 41 TGGTCATGGCCCACCTGCATCCAAGCAGGTTTCCCAGCAGC TGGTCATGGCCCACCTGCATCCAAGTAGGTTTCCCAGCAGC < 41bp 1 0.343964088065069 1 0.488645881414413 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329734 chr11:74329739 stopgain 0.971 0 26 hm5C_associated_SNPs_40562 0 0 1 0 0 Nucleus 1 0.50023164387601 1 0.999536712247979 hm5C_site_39796 DeepMRMD:1;iRNA_m5C:0.999536712247979 39797 chr11 74329739 74329739 1 + C T UCEC 74329746 + 74329726 74329766 41 ACCTGCATCCAAGCAGGTTTCCCAGCAGCCCAAAGGAATTA ACCTGCATCCAAGTAGGTTTCCCAGCAGCCCAAAGGAATTA < 41bp 1 0.472641952479715 1 0.126289278268814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329746 chr11:74329739 stopgain 0.971 0 14 hm5C_associated_SNPs_40563 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39797 DeepMRMD:1;iRNA_m5C:0.999536712157815 39798 chr11 74329739 74329739 1 + C T UCEC 74329747 + 74329727 74329767 41 CCTGCATCCAAGCAGGTTTCCCAGCAGCCCAAAGGAATTAT CCTGCATCCAAGTAGGTTTCCCAGCAGCCCAAAGGAATTAT < 41bp 1 0.230131971032955 1 0.11486878991127 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329747 chr11:74329739 stopgain 0.971 0 13 hm5C_associated_SNPs_40564 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39798 DeepMRMD:1;iRNA_m5C:0.999536712157815 39799 chr11 74329739 74329739 1 + C T UCEC 74329751 + 74329731 74329771 41 CATCCAAGCAGGTTTCCCAGCAGCCCAAAGGAATTATGGGA CATCCAAGTAGGTTTCCCAGCAGCCCAAAGGAATTATGGGA < 41bp 1 0.339794353366197 1 0.446270376443863 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329751 chr11:74329739 stopgain 0.971 0 9 hm5C_associated_SNPs_40565 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39799 DeepMRMD:1;iRNA_m5C:0.999536712157815 39800 chr11 74329739 74329739 1 + C T UCEC 74329754 + 74329734 74329774 41 CCAAGCAGGTTTCCCAGCAGCCCAAAGGAATTATGGGAATG CCAAGTAGGTTTCCCAGCAGCCCAAAGGAATTATGGGAATG < 41bp 1 0.481866990148711 1 0.119034081697464 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329754 chr11:74329739 stopgain 0.971 0 6 hm5C_associated_SNPs_40566 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39800 DeepMRMD:1;iRNA_m5C:0.999536712157815 39801 chr2 100011283 100011283 1 + A G UCEC 100011282 + 100011262 100011302 41 TTAGTGCAGAAATTATTTATCATTTATTTGATGCCTTTACA TTAGTGCAGAAATTATTTATCGTTTATTTGATGCCTTTACA < 41bp 1 0.1073945988817 1 0.0676544308662415 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100011282 chr2:100011283 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_40567 0 0 1 0 1 Ribosome 1 0.500231642555886 1 0.999536714888228 hm5C_site_39801 DeepMRMD:1;iRNA_m5C:0.999536714888228 39802 chr11 988585 988585 1 + G A UCEC 988594 + 988574 988614 41 GGCAGCGGGCCGTGGACCTCCTCTACGCCATGTGCGACCGC GGCAGCGGGCCATGGACCTCCTCTACGCCATGTGCGACCGC < 41bp 1 0.649928516862655 1 0.470606505870819 experiment 0.70014296627469 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988594 chr11:988585 nonsynonymous SNV 0.998 3 12 hm5C_associated_SNPs_40568 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39802 DeepMRMD:1;iRNA_m5C:0.999536712157815 39803 chr17 19237437 19237437 1 + A G UCEC 19237453 + 19237433 19237473 41 CCACAGCCAGCTCTGGGGGCCACTGGTTCCTCTCTGACACC CCACGGCCAGCTCTGGGGGCCACTGGTTCCTCTCTGACACC < 41bp 1 0.337256394747503 1 0.350263833999634 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control EPN2 ENSG00000072134 CDS Human protein_coding chr17:19237453 chr17:19237437 nonsynonymous SNV 0.051 0 5 hm5C_associated_SNPs_40569 0 0 0 0 0 Nucleus 1 0.500231643954867 1 0.999536712090265 hm5C_site_39803 DeepMRMD:1;iRNA_m5C:0.999536712090265 39804 chr15 75644697 75644697 1 + C T UCEC 75644692 + 75644672 75644712 41 ATCCCCCCCTTTGAGAAGGCCCGCTCGGTCCTGGAGGCCCT ATCCCCCCCTTTGAGAAGGCCCGCTTGGTCCTGGAGGCCCT < 41bp 1 0.18797100098879 1 0.0640021860599518 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75644692 chr15:75644697 nonsynonymous SNV 0.085 0 26 hm5C_associated_SNPs_40570 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39804 DeepMRMD:1;iRNA_m5C:0.999536712157815 39805 chr2 27280284 27280284 1 + A G UCEC 27280287 + 27280267 27280307 41 GGCTTTCCCCTCCAGATACACTGTGGAACTATTTGAGCAGG GGCTTTCCCCTCCAGATGCACTGTGGAACTATTTGAGCAGG < 41bp 1 0.458769878316777 1 0.286044180393219 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280287 chr2:27280284 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_40571 0 0 1 1 1 Cytosol 1 0.500231643922871 1 0.999536712154258 hm5C_site_39805 DeepMRMD:1;iRNA_m5C:0.999536712154258 39806 chr19 757070 757070 1 + G A UCEC 757057 + 757037 757077 41 TACCATCTGGTGTGCATGGGCCCCGAGGCCAGCGGCTGGGG TACCATCTGGTGTGCATGGGCCCCGAGGCCAGCAGCTGGGG < 41bp 1 0.313718478371584 1 0.0672054886817932 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757057 chr19:757070 nonsynonymous SNV 0.032 1 34 hm5C_associated_SNPs_40572 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39806 DeepMRMD:1;iRNA_m5C:0.999536712157815 39807 chr19 757070 757070 1 + G A UCEC 757058 + 757038 757078 41 ACCATCTGGTGTGCATGGGCCCCGAGGCCAGCGGCTGGGGC ACCATCTGGTGTGCATGGGCCCCGAGGCCAGCAGCTGGGGC < 41bp 1 0.590320399484784 1 0.42055881023407 experiment 0.819359201030432 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757058 chr19:757070 nonsynonymous SNV 0.032 1 33 hm5C_associated_SNPs_40573 0 0 1 0 0 nucleus 1 0.500231643889088 1 0.999536712221823 hm5C_site_39807 DeepMRMD:1;iRNA_m5C:0.999536712221823 39808 chr19 757070 757070 1 + G A UCEC 757059 + 757039 757079 41 CCATCTGGTGTGCATGGGCCCCGAGGCCAGCGGCTGGGGCC CCATCTGGTGTGCATGGGCCCCGAGGCCAGCAGCTGGGGCC < 41bp 1 0.406840159388942 1 0.200696349143982 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757059 chr19:757070 nonsynonymous SNV 0.032 1 32 hm5C_associated_SNPs_40574 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39808 DeepMRMD:1;iRNA_m5C:0.999536712157815 39809 chr8 38899558 38899558 1 + T C UCEC 38899577 + 38899557 38899597 41 CTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG CCGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTG < 41bp 1 0.0990950190241354 1 0.0832454264163971 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38899577 chr8:38899558 synonymous SNV . 0 2 hm5C_associated_SNPs_40576 0 0 0 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_39809 DeepMRMD:1;iRNA_m5C:0.999536712157815 39810 chr4 1332372 1332372 1 + G A UCEC 1332384 + 1332364 1332404 41 CCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAA CCGCCCATAATGCTGCCCAACGGCTACGTCTACGGCTACAA < 41bp 1 0.551527424783228 1 0.355048000812531 experiment 0.896945150433545 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAEA ENSG00000090316 CDS Human protein_coding chr4:1332384 chr4:1332372 nonsynonymous SNV 0.999 4 9 hm5C_associated_SNPs_40577 0 0 1 3 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39810 DeepMRMD:1;iRNA_m5C:0.999536712157815 39811 chr1 110754276 110754276 1 + G A UCEC 110754289 + 110754269 110754309 41 TACCGCAGCACCCTGCGCACCCTACCGGGAACCCGCCTCGC TACCGCAACACCCTGCGCACCCTACCGGGAACCCGCCTCGC < 41bp 1 0.054431037199792 1 0.104647636413574 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110754289 chr1:110754276 nonsynonymous SNV 0.980 4 8 hm5C_associated_SNPs_40578 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39811 DeepMRMD:1;iRNA_m5C:0.999536712157815 39812 chrX 107097921 107097921 1 + G A UCEC 107097904 + 107097884 107097924 41 GAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA GAACTAGAAAATCAAATGGCCAAACTAATACAGATCTACCA < 41bp 1 0.115218095442961 1 0.185314923524857 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MID2 ENSG00000080561 CDS Human protein_coding chrX:107097904 chrX:107097921 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_40579 0 0 0 0 2 nucleus 1 0.500231642517048 1 0.999536714965904 hm5C_site_39812 DeepMRMD:1;iRNA_m5C:0.999536714965904 39813 chr3 49713554 49713554 1 + C T UCEC 49713571 + 49713551 49713591 41 AAGCGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT AAGTGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT < 41bp 1 0.201842229822531 1 0.0651889443397522 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713571 chr3:49713554 nonsynonymous SNV 0.999 3 4 hm5C_associated_SNPs_40580 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39813 DeepMRMD:1;iRNA_m5C:0.999536712157815 39814 chr19 42729212 42729212 1 + C T UCEC 42729206 + 42729186 42729226 41 GAGTTCTTGGAGCATCAGGGCACCCACTTTGACTCCCTAGA GAGTTCTTGGAGCATCAGGGCACCCATTTTGACTCCCTAGA < 41bp 1 0.151327718047285 1 0.038733959197998 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF526 ENSG00000167625 CDS Human protein_coding chr19:42729206 chr19:42729212 synonymous SNV . 0 27 hm5C_associated_SNPs_40581 0 0 1 0 0 Cytosol 1 0.500231643921096 1 0.999536712157808 hm5C_site_39814 DeepMRMD:1;iRNA_m5C:0.999536712157808 39815 chr10 3155616 3155616 1 + A G UCEC 3155619 + 3155599 3155639 41 ACCCGCGGCTGGGATGAACGCAGCCGTACGCTCAGCTGTGC ACCCGCGGCTGGGATGAGCGCAGCCGTACGCTCAGCTGTGC < 41bp 1 0.632247274150753 1 0.642803072929382 experiment 0.735505451698494 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3155619 chr10:3155616 nonsynonymous SNV 0.150 5 18 hm5C_associated_SNPs_40583 0 0 1 0 1 Nucleus 1 0.500231644142823 0.714393854141236 0.999536711714353 hm5C_site_39815 DeepMRMD:0.714393854141236;iRNA_m5C:0.999536711714353 39816 chr18 13096262 13096262 1 + G A UCEC 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTGGCCAGCACATTGCCTCACAGTCACGCCGCAGCATGGAT < 41bp 1 0.0900927207829036 1 0.0883151590824127 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096262 synonymous SNV . 0 10 hm5C_associated_SNPs_40584 0 0 1 1 1 Nucleus 1 0.500232142419887 1 0.999535715160226 hm5C_site_39816 DeepMRMD:1;iRNA_m5C:0.999535715160226 39817 chr19 36104800 36104800 1 + C A UCEC 36104795 + 36104775 36104815 41 TCAAGAAGATCCGGGGAAACCTACTCTGGTAACTGCTTCTT TCAAGAAGATCCGGGGAAACCTACTATGGTAACTGCTTCTT < 41bp 1 0.579722130679038 1 0.131654798984528 experiment 0.840555738641924 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36104795 chr19:36104800 synonymous SNV . 0 26 hm5C_associated_SNPs_40585 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39817 DeepMRMD:1;iRNA_m5C:0.999536712157815 39818 chr1 192779343 192779343 1 + C A UCEC 192779358 + 192779338 192779378 41 TTCCTCTACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA TTCCTATACTCCTGGGAAGCCCAAAACCGGCAAAAAAAGCA < 41bp 1 0.305023595152215 1 0.547304928302765 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS2 ENSG00000116741 CDS Human protein_coding chr1:192779358 chr1:192779343 nonsynonymous SNV 0.966 1 6 hm5C_associated_SNPs_40586 0 0 1 0 2 Nucleus 1 0.500231643921092 0.90539014339447 0.999536712157815 hm5C_site_39818 DeepMRMD:0.90539014339447;iRNA_m5C:0.999536712157815 39819 chr7 142460370 142460370 1 + C T UCEC 142460352 + 142460332 142460372 41 GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAA GCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGTAA < 41bp 1 0.335228694715649 1 0.427706062793732 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460352 chr7:142460370 synonymous SNV . 0 39 hm5C_associated_SNPs_40587 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39819 DeepMRMD:1;iRNA_m5C:0.999536712157815 39820 chr7 142460370 142460370 1 + C T UCEC 142460353 + 142460333 142460373 41 CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAAC CTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGTAAC < 41bp 1 0.272121717828678 1 0.571173012256622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460353 chr7:142460370 synonymous SNV . 0 38 hm5C_associated_SNPs_40588 0 0 0 0 2 Cytosol 1 0.500231643921092 0.857653975486756 0.999536712157815 hm5C_site_39820 DeepMRMD:0.857653975486756;iRNA_m5C:0.999536712157815 39821 chr7 142460370 142460370 1 + C T UCEC 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATTACCAGTAACATGTTCTGTGTGG < 41bp 1 0.220710981481371 1 0.115656614303589 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460370 synonymous SNV . 0 25 hm5C_associated_SNPs_40590 0 0 0 0 2 Cytosol 1 0.500231643921063 1 0.999536712157874 hm5C_site_39821 DeepMRMD:1;iRNA_m5C:0.999536712157874 39822 chr7 142460370 142460370 1 + C T UCEC 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATTACCAGTAACATGTTCTGTGTGGG < 41bp 1 0.428975957392973 1 0.710056900978088 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460370 synonymous SNV . 0 24 hm5C_associated_SNPs_40591 0 0 0 0 2 Cytosol 1 0.500231636099915 0.579886198043824 0.99953672780017 hm5C_site_39822 DeepMRMD:0.579886198043824;iRNA_m5C:0.99953672780017 39823 chr7 142460370 142460370 1 + C T UCEC 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGTAACATGTTCTGTGTGGGCTTCCT < 41bp 1 0.307643511668382 1 0.0847977995872498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460370 synonymous SNV . 0 18 hm5C_associated_SNPs_40592 0 0 0 0 2 Cytosol 1 0.500231643924416 1 0.999536712151168 hm5C_site_39823 DeepMRMD:1;iRNA_m5C:0.999536712151168 39824 chr7 142460370 142460370 1 + C T UCEC 142460379 + 142460359 142460399 41 AAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGG AAGATTACCAGTAACATGTTCTGTGTGGGCTTCCTTGAGGG < 41bp 1 0.286605357280029 1 0.337920784950256 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460379 chr7:142460370 synonymous SNV . 0 12 hm5C_associated_SNPs_40593 0 0 0 0 2 Cytosol 1 0.500231644494834 1 0.999536711010332 hm5C_site_39824 DeepMRMD:1;iRNA_m5C:0.999536711010332 39825 chr7 142460370 142460370 1 + C T UCEC 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGTAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA < 41bp 1 0.160002948029366 1 0.134979903697968 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460370 synonymous SNV . 0 3 hm5C_associated_SNPs_40594 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_39825 DeepMRMD:1;iRNA_m5C:0.999536712157816 39826 chr19 11145704 11145704 1 + C T UCEC 11145691 + 11145671 11145711 41 TCGTGGATCATCAAGGACGACGCGGAGGTGGAGCGGCTGAC TCGTGGATCATCAAGGACGACGCGGAGGTGGAGTGGCTGAC < 41bp 1 0.692637697819577 1 0.596965193748474 experiment 0.614724604360845 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145691 chr19:11145704 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_40595 0 0 1 0 0 Nucleus 1 0.500196797770448 0.806069612503052 0.999606404459105 hm5C_site_39826 DeepMRMD:0.806069612503052;iRNA_m5C:0.999606404459105 39827 chr19 11145704 11145704 1 + C T UCEC 11145707 + 11145687 11145727 41 ACGACGCGGAGGTGGAGCGGCTGACCTGTGAGGAGGAGGAG ACGACGCGGAGGTGGAGTGGCTGACCTGTGAGGAGGAGGAG < 41bp 1 0.306158243288212 1 0.258997559547424 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145707 chr19:11145704 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_40596 0 0 1 0 0 Nucleus 1 0.500231643913607 1 0.999536712172786 hm5C_site_39827 DeepMRMD:1;iRNA_m5C:0.999536712172786 39828 chr15 93528733 93528733 1 + G T UCEC 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCATACAAATGACAGTGACTCTGACACTGAGTC < 41bp 1 0.190668131044737 1 0.0355815589427948 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528733 nonsynonymous SNV 1.000 0 12 hm5C_associated_SNPs_40597 0 0 1 0 1 Nucleus 1 0.500231645463462 1 0.999536709073076 hm5C_site_39828 DeepMRMD:1;iRNA_m5C:0.999536709073076 39829 chr3 50614568 50614568 1 + G A UCEC 50614550 + 50614530 50614570 41 TGTGGGATCCCCAGGCAGCCCCCTCATTCTGGAGGTGGGCT TGTGGGATCCCCAGGCAGCCCCCTCATTCTGGAGGTGGACT < 41bp 1 0.0406367113498527 1 0.0922984182834625 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614550 chr3:50614568 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_40599 0 0 0 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_39829 DeepMRMD:1;iRNA_m5C:0.999536712157815 39830 chr1 154988880 154988880 1 + C T UCEC 154988871 + 154988851 154988891 41 AGGCTTTCGCCAAGGAGGACCACCTGCAGCGCCACCTCAAA AGGCTTTCGCCAAGGAGGACCACCTGCAGTGCCACCTCAAA < 41bp 1 0.20372576580286 1 0.289002478122711 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154988871 chr1:154988880 nonsynonymous SNV 0.998 2 30 hm5C_associated_SNPs_40601 0 0 1 0 0 chromatin 1 0.500231643606304 1 0.999536712787392 hm5C_site_39830 DeepMRMD:1;iRNA_m5C:0.999536712787392 39831 chr1 55452078 55452078 1 + G T UCEC 55452081 + 55452061 55452101 41 CACCTCTCCAGAGACCTGTACTACCTCACTGTGGAGTCCTC CACCTCTCCAGAGACCTTTACTACCTCACTGTGGAGTCCTC < 41bp 1 0.157632097182081 1 0.170741081237793 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55452081 chr1:55452078 synonymous SNV . 0 18 hm5C_associated_SNPs_40602 0 0 0 0 1 Cytosol 1 0.500231944318244 1 0.999536111363511 hm5C_site_39831 DeepMRMD:1;iRNA_m5C:0.999536111363511 39832 chr6 35047380 35047380 1 + T G UCEC 35047379 + 35047359 35047399 41 CTGCAGGACTACGTCCATTCCTTCTTGTCAAGTGGTTACAG CTGCAGGACTACGTCCATTCCGTCTTGTCAAGTGGTTACAG < 41bp 1 0.214473001055431 1 0.0704146921634674 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:35047379 chr6:35047380 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_40603 0 0 0 0 2 Cytosol 1 0.500231898047891 1 0.999536203904217 hm5C_site_39832 DeepMRMD:1;iRNA_m5C:0.999536203904217 39833 chr11 8706403 8706403 1 + G C UCEC 8706393 + 8706373 8706413 41 ACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGGCTG ACAGACACGGGTGAATGCTGCTAAAAACAACACTGGGGCTG < 41bp 1 0.676246968445928 1 0.732649803161621 experiment 0.647506063108145 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL27A ENSG00000166441 CDS Human protein_coding chr11:8706393 chr11:8706403 nonsynonymous SNV 0.974 0 31 hm5C_associated_SNPs_40604 0 0 1 0 1 Cytosol 1 0.500228501773957 0.534700393676758 0.999542996452087 hm5C_site_39833 DeepMRMD:0.534700393676758;iRNA_m5C:0.999542996452087 39834 chr7 44802523 44802523 1 + G A UCEC 44802539 + 44802519 44802559 41 GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT GTCCACTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT < 41bp 1 0.0297539771981604 1 0.0305063128471375 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802539 chr7:44802523 nonsynonymous SNV 0.024 4 5 hm5C_associated_SNPs_40605 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39834 DeepMRMD:1;iRNA_m5C:0.999536712157815 39835 chrX 103434379 103434379 1 + G T UCEC 103434382 + 103434362 103434402 41 GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAGGTG GGAAGGAGAGGCTCAGTTGGCTCTTCCTTAACGAAGAGGTG < 41bp 1 0.357350215252482 1 0.153372079133987 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103434382 chrX:103434379 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_40606 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39835 DeepMRMD:1;iRNA_m5C:0.999536712157815 39836 chr15 99491876 99491876 1 + G T UCEC 99491873 + 99491853 99491893 41 ACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATG ACCAGGGCTTGTCCAACGAGCAATTCCTTCGCTTCGTCATG < 41bp 1 0.061376446768441 1 0.0493241250514984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491873 chr15:99491876 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_40608 0 0 0 0 2 Endoplasmic reticulum 1 0.500231641863368 1 0.999536716273264 hm5C_site_39836 DeepMRMD:1;iRNA_m5C:0.999536716273264 39837 chr2 39008756 39008756 1 + C A UCEC 39008755 + 39008735 39008775 41 GAAACTATGAATGAAGGGGACCATAGAGTGAGGGAGAAGCT GAAACTATGAATGAAGGGGACAATAGAGTGAGGGAGAAGCT < 41bp 1 0.464974961483498 1 0.315204560756683 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008755 chr2:39008756 nonsynonymous SNV 0.747 0 22 hm5C_associated_SNPs_40609 0 0 1 0 1 Ribosome 1 0.500231643921398 1 0.999536712157205 hm5C_site_39837 DeepMRMD:1;iRNA_m5C:0.999536712157205 39838 chr3 47324459 47324459 1 + G A UCEC 47324444 + 47324424 47324464 41 CGAGGCCTGCGCAGTTGCAGCGGCCGGGGAAGATGGTGGAG CGAGGCCTGCGCAGTTGCAGCGGCCGGGGAAGATGATGGAG < 41bp 1 0.572585558028925 1 0.527417242527008 experiment 0.854828883942149 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47324444 chr3:47324459 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_40610 0 0 1 0 0 Cytosol 1 0.500231643921092 0.945165514945984 0.999536712157815 hm5C_site_39838 DeepMRMD:0.945165514945984;iRNA_m5C:0.999536712157815 39839 chr1 52870474 52870474 1 + A G UCEC 52870493 + 52870473 52870513 41 CAATATCTGGTGGAGAAGATCATTCGAACGCGAATCTATGA CGATATCTGGTGGAGAAGATCATTCGAACGCGAATCTATGA < 41bp 1 0.155347089917335 1 0.100541055202484 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52870493 chr1:52870474 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_40611 0 0 1 0 1 Ribosome 1 0.500185769788059 1 0.999628460423882 hm5C_site_39839 DeepMRMD:1;iRNA_m5C:0.999628460423882 39840 chr16 30673995 30673995 1 + A G UCEC 30673982 + 30673962 30674002 41 CCAAGAACAGCCCCCGGGGCCCGACCCGCTGCTAGTGCCTT CCAAGAACAGCCCCCGGGGCCCGACCCGCTGCTGGTGCCTT < 41bp 1 0.159747413265492 1 0.166438639163971 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FBRS ENSG00000156860 CDS Human protein_coding chr16:30673982 chr16:30673995 synonymous SNV . 0 34 hm5C_associated_SNPs_40613 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39840 DeepMRMD:1;iRNA_m5C:0.999536712157815 39841 chr16 30673995 30673995 1 + A G UCEC 30673983 + 30673963 30674003 41 CAAGAACAGCCCCCGGGGCCCGACCCGCTGCTAGTGCCTTT CAAGAACAGCCCCCGGGGCCCGACCCGCTGCTGGTGCCTTT < 41bp 1 0.366717199078797 1 0.13716995716095 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBRS ENSG00000156860 CDS Human protein_coding chr16:30673983 chr16:30673995 synonymous SNV . 0 33 hm5C_associated_SNPs_40614 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39841 DeepMRMD:1;iRNA_m5C:0.999536712157815 39842 chr16 1545435 1545435 1 + C T UCEC 1545447 + 1545427 1545467 41 CGCAGTGTCGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC CGCAGTGTTGGCAGCAGACGCAGCCCGGCTTCATCCTGCTC < 41bp 1 0.468111204454933 1 0.359881997108459 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545447 chr16:1545435 nonsynonymous SNV 0.021 1 9 hm5C_associated_SNPs_40616 0 0 0 0 1 Cytosol 1 0.500231644950336 1 0.999536710099328 hm5C_site_39842 DeepMRMD:1;iRNA_m5C:0.999536710099328 39843 chr21 47970639 47970639 1 + C T UCEC 47970626 + 47970606 47970646 41 TGCCCTCACACCTGTGTTACCAACCTCCCCAAACCTCGTCA TGCCCTCACACCTGTGTTACCAACCTCCCCAAATCTCGTCA < 41bp 1 0.236297120860366 1 0.166033834218979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47970626 chr21:47970639 nonsynonymous SNV 0.995 4 34 hm5C_associated_SNPs_40617 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_39843 DeepMRMD:1;iRNA_m5C:0.999536712157816 39844 chr6 147635028 147635028 1 + T C UCEC 147635039 + 147635019 147635059 41 GATATCCTATATTTGAAAATCCCTACCCTTTGAGTATACAT GATATCCTACATTTGAAAATCCCTACCCTTTGAGTATACAT < 41bp 1 0.0837669599104926 1 0.199543207883835 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147635039 chr6:147635028 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_40618 0 0 1 0 1 Nucleus 1 0.500231644000272 1 0.999536711999456 hm5C_site_39844 DeepMRMD:1;iRNA_m5C:0.999536711999456 39845 chr8 98699747 98699747 1 + C T UCEC 98699751 + 98699731 98699771 41 GGTTCATTGGATTCAACTATCCCTGGGATAGAAAATACCAT GGTTCATTGGATTCAATTATCCCTGGGATAGAAAATACCAT < 41bp 1 0.263745850409657 1 0.0685345530509949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MTDH ENSG00000147649 CDS Human protein_coding chr8:98699751 chr8:98699747 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_40619 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39845 DeepMRMD:1;iRNA_m5C:0.999536712157815 39846 chr12 132464254 132464254 1 + G T UCEC 132464239 + 132464219 132464259 41 TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCAGGGAGC TTTTTCATCTTTTTTCCCAGCAGCAAGCCCTCGCATGGAGC < 41bp 1 0.210951888076147 1 0.350771069526672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132464239 chr12:132464254 nonsynonymous SNV 0.551 5 36 hm5C_associated_SNPs_40620 0 0 1 0 3 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39846 DeepMRMD:1;iRNA_m5C:0.999536712157815 39847 chr19 13054389 13054389 1 + C A UCEC 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACAAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA < 41bp 1 0.644578594905751 1 0.152832508087158 experiment 0.710842810188499 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054389 synonymous SNV . 0 6 hm5C_associated_SNPs_40621 0 0 1 0 2 Ribosome 1 0.500231643918975 1 0.999536712162049 hm5C_site_39847 DeepMRMD:1;iRNA_m5C:0.999536712162049 39848 chr16 29708335 29708335 1 + C T UCEC 29708327 + 29708307 29708347 41 TGCCCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACT TGCCCAGCAGGCGGTGCGGGCGGCCAGATAGGCGGCTGACT < 41bp 1 0.407895189199425 1 0.443868815898895 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708327 chr16:29708335 stopgain 0.016 0 29 hm5C_associated_SNPs_40623 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_39848 DeepMRMD:1;iRNA_m5C:0.999536712157815 39849 chr16 29708335 29708335 1 + C T UCEC 29708330 + 29708310 29708350 41 CCAGCAGGCGGTGCGGGCGGCCAGACAGGCGGCTGACTTCA CCAGCAGGCGGTGCGGGCGGCCAGATAGGCGGCTGACTTCA < 41bp 1 0.55591566632066 1 0.443738222122192 experiment 0.888168667358679 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPRT ENSG00000103485 CDS Human protein_coding chr16:29708330 chr16:29708335 stopgain 0.016 0 26 hm5C_associated_SNPs_40624 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644667168 1 0.999536710665664 hm5C_site_39849 DeepMRMD:1;iRNA_m5C:0.999536710665664 39850 chrX 9652125 9652125 1 + T C UCEC 9652130 + 9652110 9652150 41 GGATTGAGAGCCACATCAGCCAGTCCAACATCAATGGGACG GGATTGAGAGCCACACCAGCCAGTCCAACATCAATGGGACG < 41bp 1 0.0967549721113804 1 0.550479710102081 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9652130 chrX:9652125 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_40625 0 0 0 0 1 Cytosol 1 0.500231640227229 0.899040579795838 0.999536719545542 hm5C_site_39850 DeepMRMD:0.899040579795838;iRNA_m5C:0.999536719545542 39851 chr2 242396290 242396290 1 + A G UCEC 242396274 + 242396254 242396294 41 GAACAGGGCTCATCCCCACTCCTGAGCCCTGTCCTCAGTGA GAACAGGGCTCATCCCCACTCCTGAGCCCTGTCCTCGGTGA < 41bp 1 0.63138037342759 1 0.448498547077179 experiment 0.73723925314482 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242396274 chr2:242396290 nonsynonymous SNV 0.217 0 37 hm5C_associated_SNPs_40626 0 0 0 0 1 Nucleus 1 0.500231644432551 1 0.999536711134898 hm5C_site_39851 DeepMRMD:1;iRNA_m5C:0.999536711134898 39852 chr17 78081619 78081619 1 + G A UCEC 78081601 + 78081581 78081621 41 GTCTCCTGCATGTCCCAGCCCGGTGCGAACCTCTACGGGTC GTCTCCTGCATGTCCCAGCCCGGTGCGAACCTCTACGGATC < 41bp 1 0.468562941679044 1 0.626557469367981 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78081601 chr17:78081619 synonymous SNV . 0 39 hm5C_associated_SNPs_40627 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.746885061264038 0.999536712157815 hm5C_site_39852 DeepMRMD:0.746885061264038;iRNA_m5C:0.999536712157815 39853 chr17 7214417 7214417 1 + C T UCEC 7214415 + 7214395 7214435 41 CAACTCATAATATGGATGTCCCCAACATCAAAAGGAATGAC CAACTCATAATATGGATGTCCCTAACATCAAAAGGAATGAC < 41bp 1 0.0850388707523243 1 0.0572859048843384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214415 chr17:7214417 synonymous SNV . 0 23 hm5C_associated_SNPs_40628 0 0 1 0 2 Ribosome 1 0.50023299286922 1 0.999534014261561 hm5C_site_39853 DeepMRMD:1;iRNA_m5C:0.999534014261561 39854 chr17 7214417 7214417 1 + C T UCEC 7214416 + 7214396 7214436 41 AACTCATAATATGGATGTCCCCAACATCAAAAGGAATGACT AACTCATAATATGGATGTCCCTAACATCAAAAGGAATGACT < 41bp 1 0.130518791436925 1 0.133776932954788 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214416 chr17:7214417 synonymous SNV . 0 22 hm5C_associated_SNPs_40629 0 0 1 0 2 Ribosome 1 0.500231643844047 1 0.999536712311905 hm5C_site_39854 DeepMRMD:1;iRNA_m5C:0.999536712311905 39855 chr9 132623223 132623223 1 + C A UCEC 132623233 + 132623213 132623253 41 CAGGACTCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCC CAGGACTCCCAGCCACCCTCCCACCCTCTGAAAGCTGTTCC < 41bp 1 0.0216214392957954 1 0.204140782356262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP20 ENSG00000136878 CDS Human protein_coding chr9:132623233 chr9:132623223 nonsynonymous SNV 0.803 0 11 hm5C_associated_SNPs_40630 0 0 0 0 2 chromatin 1 0.50023164392104 1 0.999536712157919 hm5C_site_39855 DeepMRMD:1;iRNA_m5C:0.999536712157919 39856 chr2 182786960 182786960 1 + G A UCEC 182786940 + 182786920 182786960 41 GGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCTCTG GGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCTCTA < 41bp 1 0.503882711632874 1 0.260259628295898 experiment 0.992234576734252 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182786940 chr2:182786960 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_40631 0 0 1 0 0 Ribosome 1 0.500231680779066 1 0.999536638441867 hm5C_site_39856 DeepMRMD:1;iRNA_m5C:0.999536638441867 39857 chrX 73046731 73046731 1 + A G UCEC 73046721 - 73046701 73046741 41 TCTTAAGACCTGGGACAGGACACATGGAAGGCCTAAGAACT TCTTAAGACCCGGGACAGGACACATGGAAGGCCTAAGAACT < 41bp 1 0.223249119227412 1 0.149332851171494 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046721 chrX:73046731 . . 0 11 hm5C_associated_SNPs_40632 0 0 1 0 0 unknown 1 0.500231643921099 1 0.999536712157801 hm5C_site_39857 DeepMRMD:1;iRNA_m5C:0.999536712157801 39858 chrX 73046731 73046731 1 + A G UCEC 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGAAGTCTTAAGACCCGGGACAGGACACATGGAAGGCCTAA < 41bp 1 0.556989649472224 1 0.392269670963287 experiment 0.886020701055552 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046731 . . 0 16 hm5C_associated_SNPs_40633 0 0 1 0 0 unknown 1 0.500231643921121 1 0.999536712157757 hm5C_site_39858 DeepMRMD:1;iRNA_m5C:0.999536712157757 39859 chr17 29683571 29683571 1 + G A UCEC 29683551 + 29683531 29683571 41 CAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAG CAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAA < 41bp 1 0.262555249085134 1 0.412216782569885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29683551 chr17:29683571 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_40634 0 0 1 1 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39859 DeepMRMD:1;iRNA_m5C:0.999536712157815 39860 chr19 7923169 7923169 1 + G T UCEC 7923165 + 7923145 7923185 41 GCAGCAGTGCAGCTCGGCGGCCGAGGACCTGCAGAAGGCAC GCAGCAGTGCAGCTCGGCGGCCGATGACCTGCAGAAGGCAC < 41bp 1 0.235931749391929 1 0.344191253185272 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control EVI5L ENSG00000142459 CDS Human protein_coding chr19:7923165 chr19:7923169 nonsynonymous SNV 0.862 1 25 hm5C_associated_SNPs_40635 0 0 0 0 2 Ribosome 1 0.500231644397129 1 0.999536711205743 hm5C_site_39860 DeepMRMD:1;iRNA_m5C:0.999536711205743 39861 chr11 764349 764349 1 + C T UCEC 764334 + 764314 764354 41 CACCTGGATGAGAAGTCTTTCCGTTGGTTGCACAACGAGGA CACCTGGATGAGAAGTCTTTCCGTTGGTTGCACAATGAGGA < 41bp 1 0.189284786854044 1 0.587426662445068 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:764334 chr11:764349 nonsynonymous SNV 0.988 2 36 hm5C_associated_SNPs_40636 0 0 1 0 2 Ribosome 1 0.500231643953509 0.825146675109864 0.999536712092982 hm5C_site_39861 DeepMRMD:0.825146675109864;iRNA_m5C:0.999536712092982 39862 chr1 112999417 112999417 1 + A G UCEC 112999436 + 112999416 112999456 41 TAAGCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACC TGAGCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACC < 41bp 1 0.529833923514809 1 0.466560959815979 experiment 0.940332152970382 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999436 chr1:112999417 nonsynonymous SNV 0.173 3 2 hm5C_associated_SNPs_40637 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39862 DeepMRMD:1;iRNA_m5C:0.999536712157815 39863 chr2 27257057 27257057 1 + C T UCEC 27257075 + 27257055 27257095 41 AGCCAAAGAAGGTGGCAACTCCTCCCAACCAAAACCAGAAG AGTCAAAGAAGGTGGCAACTCCTCCCAACCAAAACCAGAAG < 41bp 1 0.127478316960125 1 0.459565043449402 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27257075 chr2:27257057 nonsynonymous SNV 0.928 1 3 hm5C_associated_SNPs_40638 0 0 0 0 1 Ribosome 1 0.500231643920965 1 0.99953671215807 hm5C_site_39863 DeepMRMD:1;iRNA_m5C:0.99953671215807 39864 chr11 73073727 73073727 1 + G A UCEC 73073732 + 73073712 73073752 41 TTCGCCCAGCCCCTCGGGGACGCTGCAGAGCCAGGCCAGCC TTCGCCCAGCCCCTCAGGGACGCTGCAGAGCCAGGCCAGCC < 41bp 1 0.166445220305155 1 0.176104784011841 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73073732 chr11:73073727 synonymous SNV . 0 16 hm5C_associated_SNPs_40639 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39864 DeepMRMD:1;iRNA_m5C:0.999536712157815 39865 chr16 89971377 89971377 1 + C A UCEC 89971393 + 89971373 89971413 41 GAACCTGTACCTTGGGAGGTCACACTTTCTCTGGAAAGAGC GAACATGTACCTTGGGAGGTCACACTTTCTCTGGAAAGAGC < 41bp 1 0.26160074209636 1 0.132683128118515 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89971393 chr16:89971377 nonsynonymous SNV 0.949 3 5 hm5C_associated_SNPs_40640 0 0 1 0 1 Cytosol 1 0.500231637828736 1 0.999536724342529 hm5C_site_39865 DeepMRMD:1;iRNA_m5C:0.999536724342529 39866 chr1 171544181 171544181 1 + C T UCEC 171544172 + 171544152 171544192 41 AACTGGAGTCAGCAGTAGTGCCAGTGGACCAAGCACTGCTA AACTGGAGTCAGCAGTAGTGCCAGTGGACTAAGCACTGCTA < 41bp 1 0.191821045207861 1 0.468962609767914 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171544172 chr1:171544181 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_40641 0 0 1 0 1 Cytosol 1 0.500231642479424 1 0.999536715041153 hm5C_site_39866 DeepMRMD:1;iRNA_m5C:0.999536715041153 39867 chr11 67815229 67815229 1 + C T UCEC 67815244 + 67815224 67815264 41 CCCCTCGGGCTGGAGTGTGGCCGCCATGGCCAACCAGTCTG CCCCTTGGGCTGGAGTGTGGCCGCCATGGCCAACCAGTCTG < 41bp 1 0.317154173635225 1 0.0421819686889648 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815244 chr11:67815229 nonsynonymous SNV 0.996 5 6 hm5C_associated_SNPs_40642 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157813 hm5C_site_39867 DeepMRMD:1;iRNA_m5C:0.999536712157813 39868 chr12 72094673 72094673 1 + A G UCEC 72094681 + 72094661 72094701 41 AAGGCACATAGCAGGGAAACCCATTCTTGATAACAACGCAG AAGGCACATAGCGGGGAAACCCATTCTTGATAACAACGCAG < 41bp 1 0.115249674024957 1 0.102205842733383 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM19 ENSG00000139291 CDS Human protein_coding chr12:72094681 chr12:72094673 synonymous SNV . 0 13 hm5C_associated_SNPs_40643 0 0 0 0 0 Endoplasmic reticulum 1 0.500231637967222 1 0.999536724065556 hm5C_site_39868 DeepMRMD:1;iRNA_m5C:0.999536724065556 39869 chr1 12030856 12030856 1 + C T UCEC 12030850 + 12030830 12030870 41 TTGCGCCCATGACGGAGAAGCTCTACCCCGGCTACTACACC TTGCGCCCATGACGGAGAAGCTCTACTCCGGCTACTACACC < 41bp 1 0.476091325248907 1 0.313414990901947 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12030850 chr1:12030856 nonsynonymous SNV 0.982 3 27 hm5C_associated_SNPs_40644 0 0 1 0 0 Nucleus 1 0.500231643921102 1 0.999536712157796 hm5C_site_39869 DeepMRMD:1;iRNA_m5C:0.999536712157796 39870 chr2 38908569 38908569 1 + G A UCEC 38908580 + 38908560 38908600 41 AGAGCACAAGCCAGTCAGGCCACACCAGTCAACCTGACCAA AGAGCACAAACCAGTCAGGCCACACCAGTCAACCTGACCAA < 41bp 1 0.212718885257965 1 0.144612103700638 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908580 chr2:38908569 nonsynonymous SNV 0.985 0 10 hm5C_associated_SNPs_40645 0 0 1 0 1 Ribosome 1 0.500231643926926 1 0.999536712146149 hm5C_site_39870 DeepMRMD:1;iRNA_m5C:0.999536712146149 39871 chrX 49127136 49127136 1 + T C UCEC 49127142 + 49127122 49127162 41 CGCTATGAGACCCCTGAGGGCACTTTCTGGGCCAACAACCA CGCTATGAGACCCCCGAGGGCACTTTCTGGGCCAACAACCA < 41bp 1 0.118295196544664 1 0.0630346238613129 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPP1R3F ENSG00000049769 CDS Human protein_coding chrX:49127142 chrX:49127136 synonymous SNV . 0 15 hm5C_associated_SNPs_40646 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643975109 1 0.999536712049782 hm5C_site_39871 DeepMRMD:1;iRNA_m5C:0.999536712049782 39872 chr1 24996695 24996695 1 + G A UCEC 24996676 + 24996656 24996696 41 CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAAC < 41bp 1 0.643206993679559 1 0.321196734905243 experiment 0.713586012640883 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996676 chr1:24996695 synonymous SNV . 0 40 hm5C_associated_SNPs_40647 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39872 DeepMRMD:1;iRNA_m5C:0.999536712157815 39873 chr1 24996695 24996695 1 + G A UCEC 24996681 + 24996661 24996701 41 CTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCA CTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAACCCCCA < 41bp 1 0.231201750073726 1 0.576540470123291 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996681 chr1:24996695 synonymous SNV . 0 35 hm5C_associated_SNPs_40648 0 0 1 0 1 Cytosol 1 0.500231643921093 0.846919059753418 0.999536712157815 hm5C_site_39873 DeepMRMD:0.846919059753418;iRNA_m5C:0.999536712157815 39874 chr1 24996695 24996695 1 + G A UCEC 24996688 + 24996668 24996708 41 CGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTC CGGGTCTCCTGAGCCAGCAGCTAAAAAACCCCCAGCACCTC < 41bp 1 0.616754799045132 1 0.632949352264404 experiment 0.766490401909735 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996688 chr1:24996695 synonymous SNV . 0 28 hm5C_associated_SNPs_40649 0 0 1 0 1 Cytosol 1 0.500231628583408 0.734101295471192 0.999536742833183 hm5C_site_39874 DeepMRMD:0.734101295471192;iRNA_m5C:0.999536742833183 39875 chr1 24996695 24996695 1 + G A UCEC 24996696 + 24996676 24996716 41 CTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCC CTGAGCCAGCAGCTAAAAAACCCCCAGCACCTCCATCCCCC < 41bp 1 0.413512594400593 1 0.0884632170200348 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996696 chr1:24996695 synonymous SNV . 0 20 hm5C_associated_SNPs_40650 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39875 DeepMRMD:1;iRNA_m5C:0.999536712157815 39876 chr1 24996695 24996695 1 + G A UCEC 24996698 + 24996678 24996718 41 GAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGT GAGCCAGCAGCTAAAAAACCCCCAGCACCTCCATCCCCCGT < 41bp 1 0.287793047740456 1 0.0813460648059845 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996698 chr1:24996695 synonymous SNV . 0 18 hm5C_associated_SNPs_40652 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39876 DeepMRMD:1;iRNA_m5C:0.999536712157815 39877 chr1 24996695 24996695 1 + G A UCEC 24996703 + 24996683 24996723 41 AGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGT AGCAGCTAAAAAACCCCCAGCACCTCCATCCCCCGTCCAGT < 41bp 1 0.190296188509312 1 0.0676509141921997 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996703 chr1:24996695 synonymous SNV . 0 13 hm5C_associated_SNPs_40653 0 0 1 0 1 Cytosol 1 0.50023164392148 1 0.99953671215704 hm5C_site_39877 DeepMRMD:1;iRNA_m5C:0.99953671215704 39878 chr1 24996695 24996695 1 + G A UCEC 24996705 + 24996685 24996725 41 CAGCTAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCT CAGCTAAAAAACCCCCAGCACCTCCATCCCCCGTCCAGTCT < 41bp 1 0.0446162090390725 1 0.0241390764713287 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996705 chr1:24996695 synonymous SNV . 0 11 hm5C_associated_SNPs_40654 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_39878 DeepMRMD:1;iRNA_m5C:0.999536712157815 39879 chr1 24996695 24996695 1 + G A UCEC 24996709 + 24996689 24996729 41 TAAAAAGCCCCCAGCACCTCCATCCCCCGTCCAGTCTCAGT TAAAAAACCCCCAGCACCTCCATCCCCCGTCCAGTCTCAGT < 41bp 1 0.0616619909014358 1 0.0763353705406189 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996709 chr1:24996695 synonymous SNV . 0 7 hm5C_associated_SNPs_40655 0 0 1 0 1 Cytosol 1 0.500231643923651 1 0.999536712152698 hm5C_site_39879 DeepMRMD:1;iRNA_m5C:0.999536712152698 39880 chr13 114203831 114203831 1 + C T UCEC 114203826 + 114203806 114203846 41 GCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG GCAATCACGAGGTGTGTGCCCAGACTGGAGAGACGGTCCAG < 41bp 1 0.692511589720903 1 0.121402204036713 experiment 0.614976820558195 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203826 chr13:114203831 nonsynonymous SNV 0.268 1 26 hm5C_associated_SNPs_40657 0 0 0 0 1 Ribosome 1 0.500231612197285 1 0.99953677560543 hm5C_site_39880 DeepMRMD:1;iRNA_m5C:0.99953677560543 39881 chr5 139928645 139928645 1 + A C UCEC 139928628 + 139928608 139928648 41 CTCTCTCCAAGCTGGAGGAGCTGAAGGAGCAGGAGACAGAG CTCTCTCCAAGCTGGAGGAGCTGAAGGAGCAGGAGACCGAG < 41bp 1 0.624553365574824 1 0.358637124300003 experiment 0.750893268850352 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANKHD1-EIF4EBP3;EIF4EBP3 ENSG00000131503;ENSG00000243056;ENSG00000254996 CDS Human other chr5:139928628 chr5:139928645 synonymous SNV . 0 38 hm5C_associated_SNPs_40658 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_39881 DeepMRMD:1;iRNA_m5C:0.999536712157815 39882 chr3 15253710 15253710 1 + C T UCEC 15253701 + 15253681 15253721 41 CTGAGTATCTGGAAAGAGTTCAAGCTCTACATTCAGCAGGT CTGAGTATCTGGAAAGAGTTCAAGCTCTATATTCAGCAGGT < 41bp 1 0.453308933867379 1 0.219733983278275 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15253701 chr3:15253710 nonsynonymous SNV 0.193 0 30 hm5C_associated_SNPs_40659 0 0 1 0 2 Cytosol 1 0.500231614398881 1 0.999536771202238 hm5C_site_39882 DeepMRMD:1;iRNA_m5C:0.999536771202238 39883 chr19 41078014 41078014 1 + G A UCEC 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGATGGGG < 41bp 1 0.371943556469397 1 0.848341107368469 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078014 nonsynonymous SNV 0.803 0 36 hm5C_associated_SNPs_40660 0 0 0 0 2 cytosol 1 0.500231643048282 0.303317785263062 0.999536713903435 hm5C_site_39883 DeepMRMD:0.303317785263062;iRNA_m5C:0.999536713903435 39884 chr2 32289200 32289200 1 + C T UCEC 32289205 + 32289185 32289225 41 CGCGCCAGCACCTGCCTCGGCCTCGGCCCCGGCGCCGGTGC CGCGCCAGCACCTGCTTCGGCCTCGGCCCCGGCGCCGGTGC < 41bp 1 0.448986183433485 1 0.152781546115875 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32289205 chr2:32289200 synonymous SNV . 0 16 hm5C_associated_SNPs_40661 0 0 1 0 0 Ribosome 1 0.500231643921099 1 0.999536712157801 hm5C_site_39884 DeepMRMD:1;iRNA_m5C:0.999536712157801 39885 chr2 32289200 32289200 1 + C T UCEC 32289211 + 32289191 32289231 41 AGCACCTGCCTCGGCCTCGGCCCCGGCGCCGGTGCCGGGCG AGCACCTGCTTCGGCCTCGGCCCCGGCGCCGGTGCCGGGCG < 41bp 1 0.688640448707917 1 0.556732416152954 experiment 0.622719102584166 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32289211 chr2:32289200 synonymous SNV . 0 10 hm5C_associated_SNPs_40663 0 0 1 0 0 Ribosome 1 0.500231643921089 0.886535167694092 0.999536712157822 hm5C_site_39885 DeepMRMD:0.886535167694092;iRNA_m5C:0.999536712157822 39886 chr2 32289200 32289200 1 + C T UCEC 32289213 + 32289193 32289233 41 CACCTGCCTCGGCCTCGGCCCCGGCGCCGGTGCCGGGCGGC CACCTGCTTCGGCCTCGGCCCCGGCGCCGGTGCCGGGCGGC < 41bp 1 0.598041386372957 1 0.763978719711304 experiment 0.803917227254085 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPAST ENSG00000021574 CDS Human protein_coding chr2:32289213 chr2:32289200 synonymous SNV . 0 8 hm5C_associated_SNPs_40664 0 0 1 0 0 Ribosome 1 0.500231643921093 0.472042560577392 0.999536712157815 hm5C_site_39886 DeepMRMD:0.472042560577392;iRNA_m5C:0.999536712157815 39887 chr17 76399727 76399727 1 + T C UCEC 76399746 + 76399726 76399766 41 ATGCTGCATGCCCAGACCTTCCACAGCAACTCTCTTTTGAC ACGCTGCATGCCCAGACCTTCCACAGCAACTCTCTTTTGAC < 41bp 1 0.366904774928759 1 0.111531227827072 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PGS1 ENSG00000087157 CDS Human protein_coding chr17:76399746 chr17:76399727 nonsynonymous SNV 0.808 0 2 hm5C_associated_SNPs_40665 0 0 1 2 1 chromatin 1 0.500231642775173 1 0.999536714449654 hm5C_site_39887 DeepMRMD:1;iRNA_m5C:0.999536714449654 39888 chr1 109815791 109815791 1 + G A UCEC 109815795 + 109815775 109815815 41 CTTTCCCCACCAGATGGGGGCCCAGGGCCTGGCAAGGCCCC CTTTCCCCACCAGATGAGGGCCCAGGGCCTGGCAAGGCCCC < 41bp 1 0.0843903520500286 1 0.493110924959183 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109815795 chr1:109815791 nonsynonymous SNV 0.990 0 17 hm5C_associated_SNPs_40666 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_39888 DeepMRMD:1;iRNA_m5C:0.999536712157815 39889 chr1 109815791 109815791 1 + G A UCEC 109815796 + 109815776 109815816 41 TTTCCCCACCAGATGGGGGCCCAGGGCCTGGCAAGGCCCCC TTTCCCCACCAGATGAGGGCCCAGGGCCTGGCAAGGCCCCC < 41bp 1 0.141000654699618 1 0.639180898666382 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109815796 chr1:109815791 nonsynonymous SNV 0.990 0 16 hm5C_associated_SNPs_40667 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921094 0.721638202667236 0.999536712157812 hm5C_site_39889 DeepMRMD:0.721638202667236;iRNA_m5C:0.999536712157812 39890 chr8 142176424 142176424 1 + G A UCEC 142176432 + 142176412 142176452 41 TGCCATGCCTGAGCTGGCACCCAGGAACTCCTCGCTCCGGC TGCCATGCCTGAACTGGCACCCAGGAACTCCTCGCTCCGGC < 41bp 1 0.370157834736945 1 0.790663361549377 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142176432 chr8:142176424 synonymous SNV . 0 13 hm5C_associated_SNPs_40668 0 0 0 0 1 Nucleus 1 0.500231643921815 0.418673276901246 0.999536712156371 hm5C_site_39890 DeepMRMD:0.418673276901246;iRNA_m5C:0.999536712156371 39891 chr11 837585 837585 1 + G A UCEC 837583 + 837563 837603 41 CGGTGGTGGCTCTTTGTGGGCAGCGAGACCATGCCTCCAAC CGGTGGTGGCTCTTTGTGGGCAACGAGACCATGCCTCCAAC < 41bp 1 0.661177069972808 1 0.172374874353409 experiment 0.677645860054383 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD151 ENSG00000177697 CDS Human protein_coding chr11:837583 chr11:837585 synonymous SNV . 0 23 hm5C_associated_SNPs_40669 0 0 1 1 1 Ribosome 1 0.500231655218315 1 0.999536689563371 hm5C_site_39891 DeepMRMD:1;iRNA_m5C:0.999536689563371 39892 chr1 233514926 233514926 1 + G A UCEC 233514944 + 233514924 233514964 41 TGGGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG TGAGTGCACCGTCCTTCTGGCATCGGTGGCTCTGGGACTGG < 41bp 1 0.282834905898441 1 0.0512655377388 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233514944 chr1:233514926 nonsynonymous SNV 0.002 0 3 hm5C_associated_SNPs_40670 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_39892 DeepMRMD:1;iRNA_m5C:0.999536712157815 39893 chr8 48874120 48874120 1 + G T UCEC 48874104 + 48874084 48874124 41 GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGAGGCGA GAGGATGCCAGGTCATCTCCCTCTCAGAGACGTAGATGCGA < 41bp 1 0.139882038998523 1 0.0629492104053497 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874104 chr8:48874120 nonsynonymous SNV 0.516 0 37 hm5C_associated_SNPs_40671 0 0 1 0 1 Cytosol 1 0.500231643920971 1 0.999536712158057 hm5C_site_39893 DeepMRMD:1;iRNA_m5C:0.999536712158057 39894 chr14 105352936 105352936 1 + G T UCEC 105352950 + 105352930 105352970 41 CACCAAGGGCCCCCGGGGAGCCAACTCCCGCCTCTTTCTTC CACCAATGGCCCCCGGGGAGCCAACTCCCGCCTCTTTCTTC < 41bp 1 0.0432361351731076 1 0.0657375454902649 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP170B ENSG00000099814 CDS Human protein_coding chr14:105352950 chr14:105352936 nonsynonymous SNV 0.067 2 7 hm5C_associated_SNPs_40672 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39894 DeepMRMD:1;iRNA_m5C:0.999536712157815 39895 chr7 135272429 135272429 1 + T C UCEC 135272419 + 135272399 135272439 41 CCATTTCACTTAGAAGGGACCTGGAACACTTAATGCTTTTG CCATTTCACTTAGAAGGGACCTGGAACACTCAATGCTTTTG < 41bp 1 0.597961016559084 1 0.444275587797165 experiment 0.804077966881832 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135272419 chr7:135272429 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_40674 0 0 1 0 0 Cytosol 1 0.500231643921303 1 0.999536712157395 hm5C_site_39895 DeepMRMD:1;iRNA_m5C:0.999536712157395 39896 chr1 198233303 198233303 1 + G T UCEC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTGAATATAATGAACTAAA < 41bp 1 0.111406756223215 1 0.255815267562866 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233303 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_40675 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39896 DeepMRMD:1;iRNA_m5C:0.999536712157815 39897 chr11 61897307 61897307 1 + G T UCEC 61897299 + 61897279 61897319 41 AGCCAGCTGAGCTCCCGACGCCTCCGCAGCAAGGACAGTGT AGCCAGCTGAGCTCCCGACGCCTCCGCATCAAGGACAGTGT < 41bp 1 0.0417581287753186 1 0.107030242681503 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897299 chr11:61897307 nonsynonymous SNV 0.919 3 29 hm5C_associated_SNPs_40676 0 0 1 0 1 chromatin 1 0.500231643924869 1 0.999536712150263 hm5C_site_39897 DeepMRMD:1;iRNA_m5C:0.999536712150263 39898 chr11 64701242 64701242 1 + G T UCEC 64701255 + 64701235 64701275 41 GCTACAGGGGACCCAGGGGGCCAAGGAGGCCCCCCTCCAGC GCTACAGTGGACCCAGGGGGCCAAGGAGGCCCCCCTCCAGC < 41bp 1 0.585047142722821 1 0.553826093673706 experiment 0.829905714554358 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64701255 chr11:64701242 nonsynonymous SNV 0.998 3 8 hm5C_associated_SNPs_40677 0 0 1 0 1 Ribosome 1 0.500231643948747 0.892347812652588 0.999536712102506 hm5C_site_39898 DeepMRMD:0.892347812652588;iRNA_m5C:0.999536712102506 39899 chr22 50877169 50877169 1 + C T UCEC 50877165 + 50877145 50877185 41 GGCCCCCGGGAAGAAGGAAGCGCCCCCTGTGGAGGGTGACT GGCCCCCGGGAAGAAGGAAGCGCCTCCTGTGGAGGGTGACT < 41bp 1 0.384953250262429 1 0.216906756162643 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50877165 chr22:50877169 synonymous SNV . 0 25 hm5C_associated_SNPs_40678 0 0 1 0 1 Ribosome 1 0.500231643969769 1 0.999536712060462 hm5C_site_39899 DeepMRMD:1;iRNA_m5C:0.999536712060462 39900 chr14 39650851 39650851 1 + C T UCEC 39650831 + 39650811 39650851 41 GTCGGAGTAGGGGCCGGGGACATAATAGAGATAGAAAGCAC GTCGGAGTAGGGGCCGGGGACATAATAGAGATAGAAAGCAT < 41bp 1 0.693891466301421 1 0.274739921092987 experiment 0.612217067397158 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39650831 chr14:39650851 synonymous SNV . 0 41 hm5C_associated_SNPs_40680 0 0 1 0 0 Nucleus 1 0.500231643920803 1 0.999536712158394 hm5C_site_39900 DeepMRMD:1;iRNA_m5C:0.999536712158394 39901 chr14 39650851 39650851 1 + C T UCEC 39650849 + 39650829 39650869 41 GACATAATAGAGATAGAAAGCACAGAAGGAGCGTGGATCGG GACATAATAGAGATAGAAAGCATAGAAGGAGCGTGGATCGG < 41bp 1 0.453687278661958 1 0.318601578474045 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39650849 chr14:39650851 synonymous SNV . 0 23 hm5C_associated_SNPs_40681 0 0 1 0 0 Nucleus 1 0.500231643919933 1 0.999536712160135 hm5C_site_39901 DeepMRMD:1;iRNA_m5C:0.999536712160135 39902 chr16 89759812 89759812 1 + T C UCEC 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTCCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA < 41bp 1 0.645244073056396 1 0.823930263519287 experiment 0.709511853887207 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759812 nonsynonymous SNV 0.948 4 10 hm5C_associated_SNPs_40683 0 0 1 0 2 chromatin 1 0.500231643921092 0.352139472961426 0.999536712157815 hm5C_site_39902 DeepMRMD:0.352139472961426;iRNA_m5C:0.999536712157815 39903 chr11 9456544 9456544 1 + A G UCEC 9456531 + 9456511 9456551 41 CAGTTGATACAGACACACTTCTGTCTGACACCAAGTATCTT CAGTTGATACAGACACACTTCTGTCTGACACCAGGTATCTT < 41bp 1 0.169755625561256 1 0.104059129953384 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9456531 chr11:9456544 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_40684 0 0 1 0 2 Cytosol 1 0.500231620568477 1 0.999536758863046 hm5C_site_39903 DeepMRMD:1;iRNA_m5C:0.999536758863046 39904 chr10 102798421 102798421 1 + C T UCEC 102798423 + 102798403 102798443 41 CGCCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGG CGCCCCTGGCTGGGGGCATCCCTGCAGGTGGGACTGGTGGG < 41bp 1 0.194301575937807 1 0.188364923000336 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102798423 chr10:102798421 nonsynonymous SNV 0.671 3 19 hm5C_associated_SNPs_40685 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39904 DeepMRMD:1;iRNA_m5C:0.999536712157815 39905 chr19 12036064 12036064 1 + C T UCEC 12036063 + 12036043 12036083 41 CAGGAGCTGTAGAGAGGACCCCGGTACATCTGAAAGCCGGG CAGGAGCTGTAGAGAGGACCCTGGTACATCTGAAAGCCGGG < 41bp 1 0.679086469128031 1 0.449285745620728 experiment 0.641827061743939 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF700 ENSG00000196757;ENSG00000197054;ENSG00000267179 CDS Human other chr19:12036063 chr19:12036064 synonymous SNV . 0 22 hm5C_associated_SNPs_40686 0 0 1 0 1 chromatin 1 0.500231644767015 1 0.99953671046597 hm5C_site_39905 DeepMRMD:1;iRNA_m5C:0.99953671046597 39906 chr19 41306558 41306558 1 + T C UCEC 41306542 + 41306522 41306562 41 TCAGTTACCAGGGTCTTCGTCAGAGCCCTTGGAGCCTGAGC TCAGTTACCAGGGTCTTCGTCAGAGCCCTTGGAGCCCGAGC < 41bp 1 0.658146968917047 1 0.956565976142883 experiment 0.683706062165905 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41306542 chr19:41306558 synonymous SNV . 0 37 hm5C_associated_SNPs_40687 0 0 1 0 0 chromatin 1 0.500231641437612 0.0868680477142341 0.999536717124775 hm5C_site_39906 DeepMRMD:0.0868680477142341;iRNA_m5C:0.999536717124775 39907 chr1 114500824 114500824 1 + G A UCEC 114500816 + 114500796 114500836 41 GCACCAGTTCCTGGAGTTGCCCAGCAGGGTGTTTCCTTGCA GCACCAGTTCCTGGAGTTGCCCAGCAGGATGTTTCCTTGCA < 41bp 1 0.312863798918533 1 0.388331174850464 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114500816 chr1:114500824 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_40688 0 0 1 0 1 Cytosol 1 0.500231643994081 1 0.999536712011839 hm5C_site_39907 DeepMRMD:1;iRNA_m5C:0.999536712011839 39908 chr1 156705660 156705660 1 + C T UCEC 156705645 + 156705625 156705665 41 CAGCCTGGCTCTACTGCTTGCCCCACTGGTGGAGACGCTTA CAGCCTGGCTCTACTGCTTGCCCCACTGGTGGAGATGCTTA < 41bp 1 0.412165099843537 1 0.173626720905304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156705645 chr1:156705660 nonsynonymous SNV 0.987 2 36 hm5C_associated_SNPs_40689 0 0 1 0 0 chromatin 1 0.500231643923013 1 0.999536712153975 hm5C_site_39908 DeepMRMD:1;iRNA_m5C:0.999536712153975 39909 chr1 180049715 180049715 1 + G A UCEC 180049727 + 180049707 180049747 41 ATAGGACTGGAGGACAATGTCACCTGCCTATCAAGTCCCAT ATAGGACTAGAGGACAATGTCACCTGCCTATCAAGTCCCAT < 41bp 1 0.3481363351472 1 0.26077863574028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180049727 chr1:180049715 nonsynonymous SNV 0.962 2 9 hm5C_associated_SNPs_40690 0 0 1 0 2 Nucleus 1 0.500231648038276 1 0.999536703923448 hm5C_site_39909 DeepMRMD:1;iRNA_m5C:0.999536703923448 39910 chr3 33883505 33883505 1 + T C UCEC 33883497 + 33883477 33883517 41 GTGATTGAACAGGGAGGCATCCAGACTGTTGATCAGTTGAT GTGATTGAACAGGGAGGCATCCAGACTGCTGATCAGTTGAT < 41bp 1 0.562830879203392 1 0.200825572013855 experiment 0.874338241593215 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33883497 chr3:33883505 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_40691 0 0 1 0 1 Nucleus 1 0.500231643410295 1 0.999536713179409 hm5C_site_39910 DeepMRMD:1;iRNA_m5C:0.999536713179409 39911 chr21 47978256 47978256 1 + G A UCEC 47978252 + 47978232 47978272 41 AAGGACCTGGGCCTGCCGGCCCGCGCCGTAAGCACCACGTT AAGGACCTGGGCCTGCCGGCCCGCACCGTAAGCACCACGTT < 41bp 1 0.415487237427875 1 0.310711354017258 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47978252 chr21:47978256 nonsynonymous SNV 0.143 4 25 hm5C_associated_SNPs_40693 0 0 1 0 1 Cytosol 1 0.500231643915578 1 0.999536712168844 hm5C_site_39911 DeepMRMD:1;iRNA_m5C:0.999536712168844 39912 chr22 38273926 38273926 1 + G T UCEC 38273930 + 38273910 38273950 41 ACAAAGAGCCCTTCCTGCAGCAGCTGAAGGTGTTTTCTGAT ACAAAGAGCCCTTCCTTCAGCAGCTGAAGGTGTTTTCTGAT < 41bp 1 0.536183426927532 1 0.851012945175171 experiment 0.927633146144937 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38273930 chr22:38273926 synonymous SNV . 0 17 hm5C_associated_SNPs_40694 0 0 0 0 0 Cytosol 1 0.500231643854774 0.297974109649658 0.999536712290452 hm5C_site_39912 DeepMRMD:0.297974109649658;iRNA_m5C:0.999536712290452 39913 chr5 141364477 141364477 1 + C A UCEC 141364483 + 141364463 141364503 41 ACATTTCAATGACCCTGGTTCACCATGTTTTAACCGGTATG ACATTTCAATGACCATGGTTCACCATGTTTTAACCGGTATG < 41bp 1 0.656054450288393 1 0.212841331958771 experiment 0.687891099423215 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141364483 chr5:141364477 nonsynonymous SNV 0.216 4 15 hm5C_associated_SNPs_40695 0 0 1 0 1 Ribosome 1 0.500231643891706 1 0.999536712216587 hm5C_site_39913 DeepMRMD:1;iRNA_m5C:0.999536712216587 39914 chr19 4422641 4422641 1 + C T UCEC 4422658 + 4422638 4422678 41 AAGCGGGCCAAGGAGGAGGCCAAGAAGAAGAAGGAGGAAGA AAGTGGGCCAAGGAGGAGGCCAAGAAGAAGAAGGAGGAAGA < 41bp 1 0.574705984775676 1 0.672837257385254 experiment 0.850588030448648 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4422658 chr19:4422641 nonsynonymous SNV 0.728 2 4 hm5C_associated_SNPs_40696 0 0 1 0 1 Nucleus 1 0.500231643921092 0.654325485229492 0.999536712157815 hm5C_site_39914 DeepMRMD:0.654325485229492;iRNA_m5C:0.999536712157815 39915 chr10 129141943 129141943 1 + T G UCEC 129141924 + 129141904 129141944 41 TTTCAGCTGTGGAACAACTACTTTCACCTGGCTGTTGCTTT TTTCAGCTGTGGAACAACTACTTTCACCTGGCTGTTGCTGT < 41bp 1 0.0224334073564358 1 0.0520175993442535 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141924 chr10:129141943 nonsynonymous SNV 0.979 4 40 hm5C_associated_SNPs_40697 0 0 1 0 2 Nucleus 1 0.500231643916562 1 0.999536712166875 hm5C_site_39915 DeepMRMD:1;iRNA_m5C:0.999536712166875 39916 chr10 129141943 129141943 1 + T G UCEC 129141930 + 129141910 129141950 41 CTGTGGAACAACTACTTTCACCTGGCTGTTGCTTTCCTTAC CTGTGGAACAACTACTTTCACCTGGCTGTTGCTGTCCTTAC < 41bp 1 0.157586592870957 1 0.426722466945648 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141930 chr10:129141943 nonsynonymous SNV 0.979 4 34 hm5C_associated_SNPs_40698 0 0 1 0 2 Nucleus 1 0.500231631058347 1 0.999536737883306 hm5C_site_39916 DeepMRMD:1;iRNA_m5C:0.999536737883306 39917 chr10 129141943 129141943 1 + T G UCEC 129141931 + 129141911 129141951 41 TGTGGAACAACTACTTTCACCTGGCTGTTGCTTTCCTTACT TGTGGAACAACTACTTTCACCTGGCTGTTGCTGTCCTTACT < 41bp 1 0.22437253616669 1 0.237238973379135 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141931 chr10:129141943 nonsynonymous SNV 0.979 4 33 hm5C_associated_SNPs_40699 0 0 1 0 2 Nucleus 1 0.500232166905449 1 0.999535666189103 hm5C_site_39917 DeepMRMD:1;iRNA_m5C:0.999535666189103 39918 chr10 129141943 129141943 1 + T G UCEC 129141935 + 129141915 129141955 41 GAACAACTACTTTCACCTGGCTGTTGCTTTCCTTACTCAAG GAACAACTACTTTCACCTGGCTGTTGCTGTCCTTACTCAAG < 41bp 1 0.0492466726415323 1 0.0657682716846466 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141935 chr10:129141943 nonsynonymous SNV 0.979 4 29 hm5C_associated_SNPs_40700 0 0 1 0 2 Nucleus 1 0.500231643928079 1 0.999536712143843 hm5C_site_39918 DeepMRMD:1;iRNA_m5C:0.999536712143843 39919 chr10 129141943 129141943 1 + T G UCEC 129141941 + 129141921 129141961 41 CTACTTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCC CTACTTTCACCTGGCTGTTGCTGTCCTTACTCAAGAGTCCC < 41bp 1 0.0367625615998966 1 0.121206223964691 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141941 chr10:129141943 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_40701 0 0 1 0 2 Nucleus 1 0.500231643921128 1 0.999536712157744 hm5C_site_39919 DeepMRMD:1;iRNA_m5C:0.999536712157744 39920 chr10 129141943 129141943 1 + T G UCEC 129141945 + 129141925 129141965 41 TTTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCA TTTCACCTGGCTGTTGCTGTCCTTACTCAAGAGTCCCTGCA < 41bp 1 0.0746626379076363 1 0.0268371999263763 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141945 chr10:129141943 nonsynonymous SNV 0.979 4 19 hm5C_associated_SNPs_40702 0 0 1 0 2 Nucleus 1 0.500231645773094 1 0.999536708453812 hm5C_site_39920 DeepMRMD:1;iRNA_m5C:0.999536708453812 39921 chr10 129141943 129141943 1 + T G UCEC 129141946 + 129141926 129141966 41 TTCACCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAA TTCACCTGGCTGTTGCTGTCCTTACTCAAGAGTCCCTGCAA < 41bp 1 0.0491633148200354 1 0.0325277745723724 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141946 chr10:129141943 nonsynonymous SNV 0.979 4 18 hm5C_associated_SNPs_40703 0 0 1 0 2 Nucleus 1 0.500230933668773 1 0.999538132662454 hm5C_site_39921 DeepMRMD:1;iRNA_m5C:0.999538132662454 39922 chr10 129141943 129141943 1 + T G UCEC 129141950 + 129141930 129141970 41 CCTGGCTGTTGCTTTCCTTACTCAAGAGTCCCTGCAACTGG CCTGGCTGTTGCTGTCCTTACTCAAGAGTCCCTGCAACTGG < 41bp 1 0.568311152106419 1 0.921694934368134 experiment 0.863377695787162 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141950 chr10:129141943 nonsynonymous SNV 0.979 4 14 hm5C_associated_SNPs_40704 0 0 1 0 2 Nucleus 1 0.500231643921088 0.156610131263732 0.999536712157823 hm5C_site_39922 DeepMRMD:0.156610131263732;iRNA_m5C:0.999536712157823 39923 chr10 129141943 129141943 1 + T G UCEC 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTGTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC < 41bp 1 0.0108055813366443 1 0.0454113781452179 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141943 nonsynonymous SNV 0.979 4 4 hm5C_associated_SNPs_40705 0 0 1 0 2 Nucleus 1 0.500231644367812 1 0.999536711264376 hm5C_site_39923 DeepMRMD:1;iRNA_m5C:0.999536711264376 39924 chr10 129141943 129141943 1 + T G UCEC 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTGTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA < 41bp 1 0.198081230004467 1 0.264208763837814 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141943 nonsynonymous SNV 0.979 4 3 hm5C_associated_SNPs_40706 0 0 1 0 2 Nucleus 1 0.500231643920993 1 0.999536712158013 hm5C_site_39924 DeepMRMD:1;iRNA_m5C:0.999536712158013 39925 chr8 48877255 48877255 1 + G A UCEC 48877243 + 48877223 48877263 41 ACCATTCAACGCATTGAAGACTAAGAATATGAGAAACCTGA ACCATTCAACGCATTGAAGACTAAGAATATGAAAAACCTGA < 41bp 1 0.169595971283763 1 0.234787732362747 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48877243 chr8:48877255 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_40708 0 0 1 0 0 Cytosol 1 0.50023168885028 1 0.99953662229944 hm5C_site_39925 DeepMRMD:1;iRNA_m5C:0.99953662229944 39926 chr1 120269483 120269483 1 + C T UCEC 120269481 + 120269461 120269501 41 TCTATCCTTGCAGGCAGATTCCCCAGGCGACGGCTTCGATG TCTATCCTTGCAGGCAGATTCCTCAGGCGACGGCTTCGATG < 41bp 1 0.536316732461747 1 0.0980839729309082 experiment 0.927366535076505 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120269481 chr1:120269483 synonymous SNV . 0 23 hm5C_associated_SNPs_40709 0 0 1 0 2 Ribosome 1 0.500231636544094 1 0.999536726911812 hm5C_site_39926 DeepMRMD:1;iRNA_m5C:0.999536726911812 39927 chr10 103908233 103908233 1 + G A UCEC 103908226 + 103908206 103908246 41 CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCCCCA CATCCTCATCATCCAGTTCTCGAAGCCACTCACGATCCCCA < 41bp 1 0.452138674607577 1 0.740006446838379 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908226 chr10:103908233 nonsynonymous SNV 0.710 4 28 hm5C_associated_SNPs_40710 0 0 1 0 1 Cytosol 1 0.500231643897915 0.519987106323242 0.999536712204169 hm5C_site_39927 DeepMRMD:0.519987106323242;iRNA_m5C:0.999536712204169 39928 chr8 77764708 77764708 1 + G A UCEC 77764692 + 77764672 77764712 41 AGTAACATAGTGAGTGCAGACTGCCAAATCATGAAGGATGT AGTAACATAGTGAGTGCAGACTGCCAAATCATGAAGAATGT < 41bp 1 0.108402619966296 1 0.129759907722473 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77764692 chr8:77764708 nonsynonymous SNV 0.385 1 37 hm5C_associated_SNPs_40711 0 0 0 0 0 Ribosome 1 0.500231632535022 1 0.999536734929956 hm5C_site_39928 DeepMRMD:1;iRNA_m5C:0.999536734929956 39929 chr15 93482841 93482841 1 + G A UCEC 93482839 + 93482819 93482859 41 AACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAG AACCTCGTGTTAAAAAGCAGCCAAAGACTCAGCGTGGAAAG < 41bp 1 0.136288891984055 1 0.0389395654201508 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482839 chr15:93482841 synonymous SNV . 0 23 hm5C_associated_SNPs_40712 0 0 1 0 1 Nucleus 1 0.500231643467579 1 0.999536713064843 hm5C_site_39929 DeepMRMD:1;iRNA_m5C:0.999536713064843 39930 chr15 93482841 93482841 1 + G A UCEC 93482840 + 93482820 93482860 41 ACCTCGTGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGA ACCTCGTGTTAAAAAGCAGCCAAAGACTCAGCGTGGAAAGA < 41bp 1 0.129368424290833 1 0.301869332790375 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482840 chr15:93482841 synonymous SNV . 0 22 hm5C_associated_SNPs_40713 0 0 1 0 1 Nucleus 1 0.500231681487633 1 0.999536637024733 hm5C_site_39930 DeepMRMD:1;iRNA_m5C:0.999536637024733 39931 chr15 93482841 93482841 1 + G A UCEC 93482846 + 93482826 93482866 41 TGTTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAA TGTTAAAAAGCAGCCAAAGACTCAGCGTGGAAAGAGAAAAA < 41bp 1 0.324454446465253 1 0.574907660484314 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482846 chr15:93482841 synonymous SNV . 0 16 hm5C_associated_SNPs_40714 0 0 1 0 1 Nucleus 1 0.500231644286766 0.850184679031372 0.999536711426469 hm5C_site_39931 DeepMRMD:0.850184679031372;iRNA_m5C:0.999536711426469 39932 chr15 93482841 93482841 1 + G A UCEC 93482848 + 93482828 93482868 41 TTAAAAAGCAGCCGAAGACTCAGCGTGGAAAGAGAAAAAAG TTAAAAAGCAGCCAAAGACTCAGCGTGGAAAGAGAAAAAAG < 41bp 1 0.487060763884326 1 0.781708955764771 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93482848 chr15:93482841 synonymous SNV . 0 14 hm5C_associated_SNPs_40715 0 0 1 0 1 Nucleus 1 0.500231667479227 0.436582088470458 0.999536665041546 hm5C_site_39932 DeepMRMD:0.436582088470458;iRNA_m5C:0.999536665041546 39933 chr1 41457481 41457481 1 + G T UCEC 41457471 + 41457451 41457491 41 CTCAAATCCACTTGACACATCAGTGAAGGAGAAAATATCAA CTCAAATCCACTTGACACATCAGTGAAGGATAAAATATCAA < 41bp 1 0.193597862350645 1 0.206164449453354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41457471 chr1:41457481 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_40716 0 0 1 0 2 Nucleus 1 0.500231643921669 1 0.999536712156663 hm5C_site_39933 DeepMRMD:1;iRNA_m5C:0.999536712156663 39934 chr7 130020967 130020967 1 + G A UCEC 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGAATCTCTGTAGCCAATGAGGCCCAGGTACAGA < 41bp 1 0.180444482370396 1 0.0637930333614349 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020967 nonsynonymous SNV 0.046 0 23 hm5C_associated_SNPs_40717 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643966377 1 0.999536712067245 hm5C_site_39934 DeepMRMD:1;iRNA_m5C:0.999536712067245 39935 chr8 61654507 61654507 1 + G A UCEC 61654520 + 61654500 61654540 41 CGCAGCCGGCTCCGTCGGGGCCCCCTGCACAGGGCCACCCT CGCAGCCAGCTCCGTCGGGGCCCCCTGCACAGGGCCACCCT < 41bp 1 0.0921310066560714 1 0.236338108778 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61654520 chr8:61654507 synonymous SNV . 0 8 hm5C_associated_SNPs_40718 0 0 0 0 0 Cytosol 1 0.500231645292086 1 0.999536709415829 hm5C_site_39935 DeepMRMD:1;iRNA_m5C:0.999536709415829 39936 chr8 61654507 61654507 1 + G A UCEC 61654521 + 61654501 61654541 41 GCAGCCGGCTCCGTCGGGGCCCCCTGCACAGGGCCACCCTC GCAGCCAGCTCCGTCGGGGCCCCCTGCACAGGGCCACCCTC < 41bp 1 0.176538568130554 1 0.139407247304916 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61654521 chr8:61654507 synonymous SNV . 0 7 hm5C_associated_SNPs_40719 0 0 0 0 0 Cytosol 1 0.500231643920752 1 0.999536712158496 hm5C_site_39936 DeepMRMD:1;iRNA_m5C:0.999536712158496 39937 chr8 61654507 61654507 1 + G A UCEC 61654522 + 61654502 61654542 41 CAGCCGGCTCCGTCGGGGCCCCCTGCACAGGGCCACCCTCA CAGCCAGCTCCGTCGGGGCCCCCTGCACAGGGCCACCCTCA < 41bp 1 0.087815049069814 1 0.112049877643585 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD7 ENSG00000171316 CDS Human protein_coding chr8:61654522 chr8:61654507 synonymous SNV . 0 6 hm5C_associated_SNPs_40720 0 0 0 0 0 Cytosol 1 0.500231644644578 1 0.999536710710843 hm5C_site_39937 DeepMRMD:1;iRNA_m5C:0.999536710710843 39938 chr5 82406963 82406963 1 + T C UCEC 82406946 + 82406926 82406966 41 ATTGTTGTCAGGAGCAGGACCAGCTGATGTATACACGTTTA ATTGTTGTCAGGAGCAGGACCAGCTGATGTATACACGCTTA < 41bp 1 0.636868043279348 1 0.492426604032516 experiment 0.726263913441305 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82406946 chr5:82406963 nonsynonymous SNV 0.555 3 38 hm5C_associated_SNPs_40721 0 0 1 0 1 Ribosome 1 0.500231643921052 1 0.999536712157897 hm5C_site_39938 DeepMRMD:1;iRNA_m5C:0.999536712157897 39939 chr7 142460311 142460311 1 + G T UCEC 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGT < 41bp 1 0.401385763684567 1 0.448532670736313 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460311 nonsynonymous SNV 0.002 2 41 hm5C_associated_SNPs_40722 0 0 0 0 1 Cytosol 1 0.500231660031631 1 0.999536679936739 hm5C_site_39939 DeepMRMD:1;iRNA_m5C:0.999536679936739 39940 chr7 142460311 142460311 1 + G T UCEC 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGTATGC < 41bp 1 0.343012845107263 1 0.38860034942627 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460311 nonsynonymous SNV 0.002 2 37 hm5C_associated_SNPs_40723 0 0 0 0 1 Cytosol 1 0.500288726728132 1 0.999422546543736 hm5C_site_39940 DeepMRMD:1;iRNA_m5C:0.999422546543736 39941 chr7 142460311 142460311 1 + G T UCEC 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGCCTGTATGCTCCT < 41bp 1 0.675795568513747 1 0.256605088710785 experiment 0.648408862972506 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460311 nonsynonymous SNV 0.002 2 33 hm5C_associated_SNPs_40724 0 0 0 0 1 Cytosol 1 0.500233654356847 1 0.999532691286306 hm5C_site_39941 DeepMRMD:1;iRNA_m5C:0.999532691286306 Multiple sclerosis 39942 chr7 142460311 142460311 1 + G T UCEC 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGCCTGTATGCTCCTGTG < 41bp 1 0.252272518290741 1 0.0682804882526398 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460311 nonsynonymous SNV 0.002 2 30 hm5C_associated_SNPs_40725 0 0 0 0 1 Cytosol 1 0.500231643920906 1 0.999536712158188 hm5C_site_39942 DeepMRMD:1;iRNA_m5C:0.999536712158188 39943 chr7 142460311 142460311 1 + G T UCEC 142460307 + 142460287 142460327 41 TACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAG TACCCAGACGAGCTGCAGTGCCTGTATGCTCCTGTGCTGAG < 41bp 1 0.100167624914395 1 0.0434274971485138 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460307 chr7:142460311 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_40726 0 0 0 0 1 Cytosol 1 0.50023175209805 1 0.9995364958039 hm5C_site_39943 DeepMRMD:1;iRNA_m5C:0.9995364958039 39944 chr7 142460311 142460311 1 + G T UCEC 142460308 + 142460288 142460328 41 ACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGC ACCCAGACGAGCTGCAGTGCCTGTATGCTCCTGTGCTGAGC < 41bp 1 0.688997720203915 1 0.517783045768738 experiment 0.622004559592169 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460308 chr7:142460311 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_40727 0 0 0 0 1 Cytosol 1 0.500229926218047 0.964433908462524 0.999540147563907 hm5C_site_39944 DeepMRMD:0.964433908462524;iRNA_m5C:0.999540147563907 39945 chr7 142460311 142460311 1 + G T UCEC 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGTATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.509191646973155 1 0.302042454481125 experiment 0.981616706053691 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460311 nonsynonymous SNV 0.002 2 17 hm5C_associated_SNPs_40728 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39945 DeepMRMD:1;iRNA_m5C:0.999536712157815 39946 chr7 142460311 142460311 1 + G T UCEC 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGTATGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.21410112856686 1 0.380719304084778 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460311 nonsynonymous SNV 0.002 2 15 hm5C_associated_SNPs_40729 0 0 0 0 1 Cytosol 1 0.500231643930987 1 0.999536712138025 hm5C_site_39946 DeepMRMD:1;iRNA_m5C:0.999536712138025 39947 chr7 142460311 142460311 1 + G T UCEC 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGTATGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.424305278112487 1 0.144024074077606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460311 nonsynonymous SNV 0.002 2 14 hm5C_associated_SNPs_40730 0 0 0 0 1 Cytosol 1 0.500231644064219 1 0.999536711871561 hm5C_site_39947 DeepMRMD:1;iRNA_m5C:0.999536711871561 39948 chr7 142460311 142460311 1 + G T UCEC 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGTATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.437913210180414 1 0.052130252122879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460311 nonsynonymous SNV 0.002 2 9 hm5C_associated_SNPs_40731 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_39948 DeepMRMD:1;iRNA_m5C:0.999536712157815 39949 chr7 142460311 142460311 1 + G T UCEC 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGTATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC < 41bp 1 0.349125619982262 1 0.286329507827759 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460311 nonsynonymous SNV 0.002 2 4 hm5C_associated_SNPs_40732 0 0 0 0 1 Cytosol 1 0.500231643918153 1 0.999536712163693 hm5C_site_39949 DeepMRMD:1;iRNA_m5C:0.999536712163693 39950 chr7 142460311 142460311 1 + G T UCEC 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGTATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC < 41bp 1 0.575415783484947 1 0.742589950561523 experiment 0.849168433030105 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460311 nonsynonymous SNV 0.002 2 3 hm5C_associated_SNPs_40733 0 0 0 0 1 Cytosol 1 0.500231577925772 0.514820098876954 0.999536844148457 hm5C_site_39950 DeepMRMD:0.514820098876954;iRNA_m5C:0.999536844148457 39951 chr19 41078001 41078001 1 + G A UCEC 41077999 + 41077979 41078019 41 GGACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGG GGACTCCAAGGGCCCGGCATCCAGGAGCACACACGGTGGGG < 41bp 1 0.269808966841758 1 0.876202166080475 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41077999 chr19:41078001 nonsynonymous SNV 0.609 3 23 hm5C_associated_SNPs_40734 0 0 1 0 2 cytosol 1 0.500231586121999 0.24759566783905 0.999536827756003 hm5C_site_39951 DeepMRMD:0.24759566783905;iRNA_m5C:0.999536827756003 39952 chr7 98564724 98564724 1 + C T UCEC 98564739 + 98564719 98564759 41 AAAAACGCTTTCCGGAAGACCTTGAATTAAATGCCCAGTTT AAAAATGCTTTCCGGAAGACCTTGAATTAAATGCCCAGTTT < 41bp 1 0.202837359972086 1 0.254385769367218 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98564739 chr7:98564724 nonsynonymous SNV 0.998 2 6 hm5C_associated_SNPs_40735 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_39952 DeepMRMD:1;iRNA_m5C:0.999536712157815 39953 chr11 120317116 120317116 1 + G T UCEC 120317136 + 120317116 120317156 41 GAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCCACT TAGAAGACCTGAGCTCATTCCTGAGGATCTGCATCGCCACT < 41bp 1 0.357020333856865 1 0.477932542562485 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120317136 chr11:120317116 nonsynonymous SNV 0.983 4 1 hm5C_associated_SNPs_40736 0 0 1 0 1 Cytosol 1 0.500231566312232 1 0.999536867375537 hm5C_site_39953 DeepMRMD:1;iRNA_m5C:0.999536867375537 39954 chr3 11301478 11301478 1 + G T UCEC 11301466 + 11301446 11301486 41 AGAGAACCCCAAGGGGGATGCCAAGAAACCAGGGAAGGAGT AGAGAACCCCAAGGGGGATGCCAAGAAACCAGTGAAGGAGT < 41bp 1 0.243761887355764 1 0.482087880373001 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HRH1 ENSG00000196639 CDS Human protein_coding chr3:11301466 chr3:11301478 nonsynonymous SNV 0.997 0 33 hm5C_associated_SNPs_40737 0 0 0 0 0 nucleus 1 0.500231643920884 1 0.999536712158232 hm5C_site_39954 DeepMRMD:1;iRNA_m5C:0.999536712158232 39955 chr2 70122274 70122274 1 + G A UCEC 70122272 + 70122252 70122292 41 CGGGAGAGAGAACGCAGGCGCCGAGAAAGGTCCAGGTCTCG CGGGAGAGAGAACGCAGGCGCCAAGAAAGGTCCAGGTCTCG < 41bp 1 0.646158210479685 1 0.442948430776596 experiment 0.707683579040629 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122272 chr2:70122274 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_40738 0 0 1 1 2 Ribosome 1 0.500231643919906 1 0.999536712160188 hm5C_site_39955 DeepMRMD:1;iRNA_m5C:0.999536712160188 39956 chr9 19300318 19300318 1 + G T UCEC 19300313 + 19300293 19300333 41 AGCTGTCTTGACTGGGGTAGCTGAAGCTGTTGTAGCTGTAA AGCTGTCTTGACTGGGGTAGCTGAATCTGTTGTAGCTGTAA < 41bp 1 0.5628629436997 1 0.581621944904327 experiment 0.874274112600599 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19300313 chr9:19300318 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_40739 0 0 1 0 1 Nucleus 1 0.500231686195319 0.836756110191346 0.999536627609362 hm5C_site_39956 DeepMRMD:0.836756110191346;iRNA_m5C:0.999536627609362 39957 chr3 38524741 38524741 1 + A T UCEC 38524735 + 38524715 38524755 41 GGTGTCCCTGATTCGGAGGTCGGTCAACGGCACTACCTCGG GGTGTCCCTGATTCGGAGGTCGGTCATCGGCACTACCTCGG < 41bp 1 0.268440090018905 1 0.339996635913849 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38524735 chr3:38524741 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_40740 0 0 1 0 0 Ribosome 1 0.500230103086999 1 0.999539793826001 hm5C_site_39957 DeepMRMD:1;iRNA_m5C:0.999539793826001 39958 chr17 48736637 48736637 1 + G T UCEC 48736623 + 48736603 48736643 41 CCATCTATGGCTACCGGCATCCCCTGGAGGAGAAGGACCTC CCATCTATGGCTACCGGCATCCCCTGGAGGAGAATGACCTC < 41bp 1 0.188847710588277 1 0.15810552239418 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48736623 chr17:48736637 stopgain 0.997 1 35 hm5C_associated_SNPs_40741 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643885271 1 0.999536712229459 hm5C_site_39958 DeepMRMD:1;iRNA_m5C:0.999536712229459 39959 chr17 48736637 48736637 1 + G T UCEC 48736625 + 48736605 48736645 41 ATCTATGGCTACCGGCATCCCCTGGAGGAGAAGGACCTCTG ATCTATGGCTACCGGCATCCCCTGGAGGAGAATGACCTCTG < 41bp 1 0.312603779989562 1 0.403401613235474 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48736625 chr17:48736637 stopgain 0.997 1 33 hm5C_associated_SNPs_40742 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643881959 1 0.999536712236082 hm5C_site_39959 DeepMRMD:1;iRNA_m5C:0.999536712236082 39960 chr6 53785434 53785434 1 + C T UCEC 53785428 + 53785408 53785448 41 TCTTTGTCACTGCAGAGAATCTGCCTCGCTGTGGTGCACTG TCTTTGTCACTGCAGAGAATCTGCCTTGCTGTGGTGCACTG < 41bp 1 0.549584743978591 1 0.382216602563858 experiment 0.900830512042819 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53785428 chr6:53785434 nonsynonymous SNV 0.846 2 27 hm5C_associated_SNPs_40743 0 0 1 0 1 Ribosome 1 0.500231496801335 1 0.999537006397329 hm5C_site_39960 DeepMRMD:1;iRNA_m5C:0.999537006397329 39961 chr14 61997281 61997281 1 + C A UCEC 61997276 + 61997256 61997296 41 TGATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCA TGATGAGGTGGTCTACCCTACCTGGATCCATGAAGATGCCA < 41bp 1 0.126168684729555 1 0.134138971567154 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997276 chr14:61997281 nonsynonymous SNV 0.997 0 26 hm5C_associated_SNPs_40744 0 0 0 0 1 Cytosol 1 0.50023164988195 1 0.9995367002361 hm5C_site_39961 DeepMRMD:1;iRNA_m5C:0.9995367002361 39962 chr5 5303758 5303758 1 + C T UCEC 5303760 + 5303740 5303780 41 CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCGACGCTGTC CCAACCCCTCGGCCAGAGTGCAGCTGCTGCCCGACGCTGTC < 41bp 1 0.474541797386447 1 0.190200626850128 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303760 chr5:5303758 nonsynonymous SNV 0.013 1 19 hm5C_associated_SNPs_40745 0 0 0 0 1 exosome 1 0.500231643919464 1 0.999536712161073 hm5C_site_39962 DeepMRMD:1;iRNA_m5C:0.999536712161073 39963 chr12 56537074 56537074 1 + C T UCEC 56537084 + 56537064 56537104 41 TCTGTCAAGTCTAATTCCTCCTTCATGTCAAGAGAGCGTGA TCTGTCAAGTTTAATTCCTCCTTCATGTCAAGAGAGCGTGA < 41bp 1 0.279868676135472 1 0.430492341518402 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56537084 chr12:56537074 nonsynonymous SNV 0.979 4 11 hm5C_associated_SNPs_40747 0 0 1 0 2 Endoplasmic reticulum 1 0.500231698446101 1 0.999536603107799 hm5C_site_39963 DeepMRMD:1;iRNA_m5C:0.999536603107799 39964 chr15 57526290 57526290 1 + A G UCEC 57526295 + 57526275 57526315 41 AGGTGATGCACTTGGAAAGGCTTTGGCATCTGTGAGTATTG AGGTGATGCACTTGGGAAGGCTTTGGCATCTGTGAGTATTG < 41bp 1 0.139338703585222 1 0.0476078689098358 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57526295 chr15:57526290 synonymous SNV . 0 16 hm5C_associated_SNPs_40748 0 0 1 0 2 Cytosol 1 0.500230222003292 1 0.999539555993417 hm5C_site_39964 DeepMRMD:1;iRNA_m5C:0.999539555993417 39965 chr11 9530372 9530372 1 + G T UCEC 9530377 + 9530357 9530397 41 GAGGAGGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTGA GAGGAGGAGCAGGAATCCTTCTTTGAGCCGCCCCCAGGTGA < 41bp 1 0.409729996587332 1 0.0959291756153107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9530377 chr11:9530372 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_40749 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_39965 DeepMRMD:1;iRNA_m5C:0.999536712157815 39966 chr22 41322439 41322439 1 + A G UCEC 41322444 + 41322424 41322464 41 CAGCCAGGCTTCTTGACCTTCACTGCGGCCCACATGCACCT CAGCCAGGCTTCTTGGCCTTCACTGCGGCCCACATGCACCT < 41bp 1 0.342758492865164 1 0.255221962928772 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient XPNPEP3 ENSG00000196236 CDS Human protein_coding chr22:41322444 chr22:41322439 stoploss 0.078 0 16 hm5C_associated_SNPs_40750 0 0 1 0 1 Ribosome 1 0.50023163385058 1 0.99953673229884 hm5C_site_39966 DeepMRMD:1;iRNA_m5C:0.99953673229884 39967 chr12 110456189 110456189 1 + G A UCEC 110456173 + 110456153 110456193 41 CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATC CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCACATC < 41bp 1 0.387407613934635 1 0.338686764240265 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456173 chr12:110456189 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_40751 0 0 1 0 1 chromatin 1 0.500231643919756 1 0.999536712160487 hm5C_site_39967 DeepMRMD:1;iRNA_m5C:0.999536712160487 39968 chr12 110456189 110456189 1 + G A UCEC 110456174 + 110456154 110456194 41 CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATCT CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCACATCT < 41bp 1 0.331973631286475 1 0.329476088285446 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456174 chr12:110456189 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_40752 0 0 1 0 1 chromatin 1 0.500231643893495 1 0.99953671221301 hm5C_site_39968 DeepMRMD:1;iRNA_m5C:0.99953671221301 39969 chr22 38284440 38284440 1 + G A UCEC 38284433 + 38284413 38284453 41 TGCTTTTCTTTCTCTTCTAGCTTAATCGAACCCTGAAGAAG TGCTTTTCTTTCTCTTCTAGCTTAATCAAACCCTGAAGAAG < 41bp 1 0.195322735654396 1 0.0721326470375061 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38284433 chr22:38284440 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_40753 0 0 1 0 1 Cytosol 1 0.500231643921078 1 0.999536712157844 hm5C_site_39969 DeepMRMD:1;iRNA_m5C:0.999536712157844 39970 chr22 38284440 38284440 1 + G A UCEC 38284443 + 38284423 38284463 41 TCTCTTCTAGCTTAATCGAACCCTGAAGAAGATGGGACAGA TCTCTTCTAGCTTAATCAAACCCTGAAGAAGATGGGACAGA < 41bp 1 0.119704525741351 1 0.0952037870883942 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38284443 chr22:38284440 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_40754 0 0 1 0 1 Cytosol 1 0.500231643903843 1 0.999536712192314 hm5C_site_39970 DeepMRMD:1;iRNA_m5C:0.999536712192314 39971 chr19 10812883 10812883 1 + A G UCEC 10812865 + 10812845 10812885 41 GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGAGA GGAGGGCGTCCGCTTCCGCTCCCCCTACGACGGCAATGGGA < 41bp 1 0.204291814586335 1 0.107497334480286 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10812865 chr19:10812883 nonsynonymous SNV 0.778 0 39 hm5C_associated_SNPs_40755 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39971 DeepMRMD:1;iRNA_m5C:0.999536712157815 39972 chrX 153628224 153628224 1 + C T UCEC 153628229 + 153628209 153628249 41 CATATCCGGGTGCGGCTCCACCCCTTCCACGTCATCCGCAT CATATCCGGGTGCGGTTCCACCCCTTCCACGTCATCCGCAT < 41bp 1 0.362652306024457 1 0.0519974827766418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628229 chrX:153628224 nonsynonymous SNV 0.973 3 16 hm5C_associated_SNPs_40756 0 0 1 0 1 Cytosol 1 0.500231614668892 1 0.999536770662217 hm5C_site_39972 DeepMRMD:1;iRNA_m5C:0.999536770662217 39973 chr9 109689803 109689803 1 + A C UCEC 109689820 + 109689800 109689840 41 CGGACGGTCAAAGGGGTACTCATTCATTATCAGAAGAAGCA CGGCCGGTCAAAGGGGTACTCATTCATTATCAGAAGAAGCA < 41bp 1 0.0305657979315586 1 0.0785727202892303 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109689820 chr9:109689803 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_40757 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_39973 DeepMRMD:1;iRNA_m5C:0.999536712157815 39974 chr2 55056530 55056530 1 + C T UCEC 55056514 + 55056494 55056534 41 ATGTATGCTTGTGAAGAAGGCTTTGCCACTGGTGGGCGAGA ATGTATGCTTGTGAAGAAGGCTTTGCCACTGGTGGGTGAGA < 41bp 1 0.0295297985963758 1 0.105950474739075 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55056514 chr2:55056530 stopgain 0.998 0 37 hm5C_associated_SNPs_40758 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_39974 DeepMRMD:1;iRNA_m5C:0.999536712157815 39975 chr17 17041249 17041249 1 + C T UCEC 17041237 + 17041217 17041257 41 CTGTCTCTTCCAGAGGAGAGCGCCATGAGTAGCGACCGCAT CTGTCTCTTCCAGAGGAGAGCGCCATGAGTAGTGACCGCAT < 41bp 1 0.552027973266156 1 0.807135820388794 experiment 0.895944053467688 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17041237 chr17:17041249 synonymous SNV . 0 33 hm5C_associated_SNPs_40759 0 0 1 0 1 Cytosol 1 0.500231643946795 0.385728359222412 0.999536712106409 hm5C_site_39975 DeepMRMD:0.385728359222412;iRNA_m5C:0.999536712106409 39976 chr2 207175008 207175008 1 + G A UCEC 207175003 + 207174983 207175023 41 GTGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGA GTGGCCTTAGATAAACCATGCCATCATCATCCTCCAGCAGA < 41bp 1 0.0290853436666044 1 0.0254610776901245 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207175003 chr2:207175008 nonsynonymous SNV 0.084 0 26 hm5C_associated_SNPs_40760 0 0 1 0 0 Nucleus 1 0.500231627101495 1 0.999536745797009 hm5C_site_39976 DeepMRMD:1;iRNA_m5C:0.999536745797009 39977 chr2 207175008 207175008 1 + G A UCEC 207175004 + 207174984 207175024 41 TGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGAG TGGCCTTAGATAAACCATGCCATCATCATCCTCCAGCAGAG < 41bp 1 0.379798589703821 1 0.133205235004425 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207175004 chr2:207175008 nonsynonymous SNV 0.084 0 25 hm5C_associated_SNPs_40761 0 0 1 0 0 Nucleus 1 0.500231643910784 1 0.999536712178433 hm5C_site_39977 DeepMRMD:1;iRNA_m5C:0.999536712178433 39978 chr13 103286379 103286379 1 + A G UCEC 103286380 + 103286360 103286400 41 TAACTGGACACTGAGAGGGACGCAGCTGATGAATGGAACAT TAACTGGACACTGAGAGGGGCGCAGCTGATGAATGGAACAT < 41bp 1 0.433995020316414 1 0.196266889572144 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103286380 chr13:103286379 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_40762 0 0 1 0 2 Nucleus 1 0.500231643921105 1 0.99953671215779 hm5C_site_39978 DeepMRMD:1;iRNA_m5C:0.99953671215779 39979 chr11 44626947 44626947 1 + G A UCEC 44626956 + 44626936 44626976 41 CCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGC CCCAGGTGACGACCGGGGCCCTCTTCTACTTCAACATGGGC < 41bp 1 0.07653351421069 1 0.0353669226169586 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44626956 chr11:44626947 nonsynonymous SNV 0.052 1 12 hm5C_associated_SNPs_40763 0 0 1 0 2 Nucleus 1 0.50023164377113 1 0.999536712457739 hm5C_site_39979 DeepMRMD:1;iRNA_m5C:0.999536712457739 39980 chr4 144336822 144336822 1 + A C UCEC 144336803 + 144336783 144336823 41 AAAAAAGAGTTTGAAAACAGCTACATTTTTGATATCAACAC AAAAAAGAGTTTGAAAACAGCTACATTTTTGATATCAACCC < 41bp 1 0.565250160376363 1 0.171715021133423 experiment 0.869499679247275 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144336803 chr4:144336822 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_40764 0 0 1 0 0 chromatin 1 0.500231644642211 1 0.999536710715579 hm5C_site_39980 DeepMRMD:1;iRNA_m5C:0.999536710715579 39981 chr11 65392707 65392707 1 + G A UCEC 65392705 + 65392685 65392725 41 TCTGTGGCCTCCTGGTGGCACTGTCCTACCACCTGAGCCGG TCTGTGGCCTCCTGGTGGCACTATCCTACCACCTGAGCCGG < 41bp 1 0.0698792169374027 1 0.361160039901733 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392705 chr11:65392707 synonymous SNV . 0 23 hm5C_associated_SNPs_40766 0 0 1 0 2 Ribosome 1 0.500231643921086 1 0.999536712157827 hm5C_site_39981 DeepMRMD:1;iRNA_m5C:0.999536712157827 39982 chr15 42984415 42984415 1 + A C UCEC 42984419 + 42984399 42984439 41 ACACAGCAGCACTGAGAATGCCCAGGGTTCAAATGAGGCCT ACACAGCAGCACTGAGCATGCCCAGGGTTCAAATGAGGCCT < 41bp 1 0.136648254734432 1 0.321140199899673 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STARD9 ENSG00000159433 CDS Human protein_coding chr15:42984419 chr15:42984415 nonsynonymous SNV 0.015 1 17 hm5C_associated_SNPs_40767 0 0 0 0 0 Cytosol 1 0.500231611694618 1 0.999536776610764 hm5C_site_39982 DeepMRMD:1;iRNA_m5C:0.999536776610764 39983 chr15 42984415 42984415 1 + A C UCEC 42984420 + 42984400 42984440 41 CACAGCAGCACTGAGAATGCCCAGGGTTCAAATGAGGCCTG CACAGCAGCACTGAGCATGCCCAGGGTTCAAATGAGGCCTG < 41bp 1 0.181087220198615 1 0.361942052841187 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STARD9 ENSG00000159433 CDS Human protein_coding chr15:42984420 chr15:42984415 nonsynonymous SNV 0.015 1 16 hm5C_associated_SNPs_40768 0 0 0 0 0 Cytosol 1 0.500231643921074 1 0.999536712157853 hm5C_site_39983 DeepMRMD:1;iRNA_m5C:0.999536712157853 39984 chr15 42984415 42984415 1 + A C UCEC 42984421 + 42984401 42984441 41 ACAGCAGCACTGAGAATGCCCAGGGTTCAAATGAGGCCTGG ACAGCAGCACTGAGCATGCCCAGGGTTCAAATGAGGCCTGG < 41bp 1 0.477543812209445 1 0.501389861106873 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STARD9 ENSG00000159433 CDS Human protein_coding chr15:42984421 chr15:42984415 nonsynonymous SNV 0.015 1 15 hm5C_associated_SNPs_40769 0 0 0 0 0 Cytosol 1 0.500231644658133 0.997220277786254 0.999536710683735 hm5C_site_39984 DeepMRMD:0.997220277786254;iRNA_m5C:0.999536710683735 39985 chr19 39948357 39948357 1 + G T UCEC 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAGTATGAGGACGAGGACCAGTGGGAGGATGTAGCAGA < 41bp 1 0.284043027411704 1 0.192401140928268 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948357 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_40770 0 0 1 0 2 Nucleus 1 0.500231643920922 1 0.999536712158157 hm5C_site_39985 DeepMRMD:1;iRNA_m5C:0.999536712158157 39986 chr19 39948357 39948357 1 + G T UCEC 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAGTATGAGGACGAGGACCAGTGGGAGGATGTAGCAGAG < 41bp 1 0.529704688518855 1 0.217215031385422 experiment 0.94059062296229 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948357 nonsynonymous SNV 0.998 3 34 hm5C_associated_SNPs_40771 0 0 1 0 2 Nucleus 1 0.500231604814932 1 0.999536790370137 hm5C_site_39986 DeepMRMD:1;iRNA_m5C:0.999536790370137 39987 chr19 39948357 39948357 1 + G T UCEC 39948360 + 39948340 39948380 41 GGACCAGTGGGAGGATGGAGCAGAGGACATTCTAGAGAAAG GGACCAGTGGGAGGATGTAGCAGAGGACATTCTAGAGAAAG < 41bp 1 0.677715128442979 1 0.866448283195496 experiment 0.644569743114042 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948360 chr19:39948357 nonsynonymous SNV 0.998 3 18 hm5C_associated_SNPs_40772 0 0 1 0 2 Nucleus 1 0.500231643921093 0.267103433609008 0.999536712157814 hm5C_site_39987 DeepMRMD:0.267103433609008;iRNA_m5C:0.999536712157814 39988 chr19 39948357 39948357 1 + G T UCEC 39948367 + 39948347 39948387 41 TGGGAGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTG TGGGAGGATGTAGCAGAGGACATTCTAGAGAAAGGTGTGTG < 41bp 1 0.0451336935137352 1 0.0523582398891449 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948367 chr19:39948357 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_40773 0 0 1 0 2 Nucleus 1 0.500231644036301 1 0.999536711927397 hm5C_site_39988 DeepMRMD:1;iRNA_m5C:0.999536711927397 39989 chr7 77227175 77227175 1 + G A UCEC 77227168 + 77227148 77227188 41 TCTTTATTTAGGAGGATGAACAAGCAAGAACAGACTACTTC TCTTTATTTAGGAGGATGAACAAGCAAAAACAGACTACTTC < 41bp 1 0.359236608619021 1 0.327237993478775 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77227168 chr7:77227175 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_40774 0 0 1 0 2 Ribosome 1 0.500231643903511 1 0.999536712192978 hm5C_site_39989 DeepMRMD:1;iRNA_m5C:0.999536712192978 39990 chr16 28845676 28845676 1 + T C UCEC 28845668 + 28845648 28845688 41 GTGTCCTCATCCCCAGGCACCTCAGATGTATCCATATCCTG GTGTCCTCATCCCCAGGCACCTCAGATGCATCCATATCCTG < 41bp 1 0.308279158115565 1 0.0719198286533356 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845668 chr16:28845676 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_40775 0 0 1 0 2 Cytosol 1 0.500231646593255 1 0.999536706813491 hm5C_site_39990 DeepMRMD:1;iRNA_m5C:0.999536706813491 39991 chr17 78359417 78359417 1 + G A UCEC 78359407 + 78359387 78359427 41 ATGGAACAAACTGAGGAGATCGCTTGAGACGAACGGTTAGT ATGGAACAAACTGAGGAGATCGCTTGAGACAAACGGTTAGT < 41bp 1 0.0458148223299869 1 0.319346338510513 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78359407 chr17:78359417 synonymous SNV . 0 31 hm5C_associated_SNPs_40776 0 0 1 0 2 Nucleus 1 0.500231643909101 1 0.999536712181799 hm5C_site_39991 DeepMRMD:1;iRNA_m5C:0.999536712181799 39992 chr2 219677656 219677656 1 + T G UCEC 219677655 + 219677635 219677675 41 TTGCTTTCACAGGGAAGAAGCTGATTGATGAGAAGCTCGAA TTGCTTTCACAGGGAAGAAGCGGATTGATGAGAAGCTCGAA < 41bp 1 0.367390752472689 1 0.430353313684464 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677655 chr2:219677656 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_40777 0 0 1 0 1 cytosol 1 0.500231682190514 1 0.999536635618972 hm5C_site_39992 DeepMRMD:1;iRNA_m5C:0.999536635618972 39993 chr17 27011946 27011946 1 + A G UCEC 27011928 + 27011908 27011948 41 ACAGACTTCCTTCGACTGCCCCATTTTACCAAACGGCGAAC ACAGACTTCCTTCGACTGCCCCATTTTACCAAACGGCGGAC < 41bp 1 0.0877644935192354 1 0.0416757464408875 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011928 chr17:27011946 synonymous SNV . 0 39 hm5C_associated_SNPs_40778 0 0 1 0 1 Cytosol 1 0.50023164392108 1 0.99953671215784 hm5C_site_39993 DeepMRMD:1;iRNA_m5C:0.99953671215784 39994 chr17 27011946 27011946 1 + A G UCEC 27011948 + 27011928 27011968 41 CCATTTTACCAAACGGCGAACTGCATGGAGAGAGGAAGAGC CCATTTTACCAAACGGCGGACTGCATGGAGAGAGGAAGAGC < 41bp 1 0.517869679979468 1 0.701994597911835 experiment 0.964260640041064 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011948 chr17:27011946 synonymous SNV . 0 19 hm5C_associated_SNPs_40779 0 0 1 0 1 Cytosol 1 0.500231643921128 0.59601080417633 0.999536712157744 hm5C_site_39994 DeepMRMD:0.59601080417633;iRNA_m5C:0.999536712157744 39995 chr9 96411441 96411441 1 + C T UCEC 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GTACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG < 41bp 1 0.468640345931913 1 0.40632763504982 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411441 synonymous SNV . 0 2 hm5C_associated_SNPs_40780 0 0 1 0 2 chromatin 1 0.499997033486973 1 1 hm5C_site_39995 DeepMRMD:1;iRNA_m5C:1 39996 chr17 40714711 40714711 1 + C T UCEC 40714704 + 40714684 40714724 41 TGGCCTCCCTAGCCCCTCGCCTGGCCTCCATCCTGACCTCG TGGCCTCCCTAGCCCCTCGCCTGGCCTTCATCCTGACCTCG < 41bp 1 0.520797853113 1 0.288163483142853 experiment 0.958404293774 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COASY ENSG00000068120 CDS Human protein_coding chr17:40714704 chr17:40714711 nonsynonymous SNV 0.935 2 28 hm5C_associated_SNPs_40781 0 0 1 0 1 Ribosome 1 0.500231643934754 1 0.999536712130492 hm5C_site_39996 DeepMRMD:1;iRNA_m5C:0.999536712130492 39997 chr10 72294246 72294246 1 + G A UCEC 72294256 + 72294236 72294276 41 AGCTTTCTCCGCATGGTGCCCCAGGGAAGGAGGATGGTGGA AGCTTTCTCCACATGGTGCCCCAGGGAAGGAGGATGGTGGA < 41bp 1 0.282241529828509 1 0.728201508522034 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72294256 chr10:72294246 nonsynonymous SNV 0.390 0 11 hm5C_associated_SNPs_40782 0 0 0 0 2 Ribosome 1 0.500231643921032 0.543596982955932 0.999536712157936 hm5C_site_39997 DeepMRMD:0.543596982955932;iRNA_m5C:0.999536712157936 39998 chr19 52195904 52195904 1 + G A UCEC 52195886 + 52195866 52195906 41 GCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCA GCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCACA < 41bp 1 0.089812470278976 1 0.0120324194431305 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195886 chr19:52195904 . . 0 39 hm5C_associated_SNPs_40783 0 0 1 0 0 unknown 1 0.500231643962189 1 0.999536712075623 hm5C_site_39998 DeepMRMD:1;iRNA_m5C:0.999536712075623 39999 chr19 52195904 52195904 1 + G A UCEC 52195887 + 52195867 52195907 41 CACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCAC CACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCACAC < 41bp 1 0.366489010389209 1 0.0778210163116455 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195887 chr19:52195904 . . 0 38 hm5C_associated_SNPs_40784 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_39999 DeepMRMD:1;iRNA_m5C:0.999536712157815 40000 chr12 123466335 123466335 1 + G T UCEC 123466332 + 123466312 123466352 41 AAGAAGCTGAAGAAGAAGGGCAAGGAGAAGGCGGAAGCACA AAGAAGCTGAAGAAGAAGGGCAATGAGAAGGCGGAAGCACA < 41bp 1 0.135709195688634 1 0.140558302402496 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123466332 chr12:123466335 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_40785 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40000 DeepMRMD:1;iRNA_m5C:0.999536712157815 40001 chr11 45882561 45882561 1 + C T UCEC 45882565 + 45882545 45882585 41 ACGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT ACGACGAGACCTACGGTGTGCCCTCCCTGGAGGAGCTGGGT < 41bp 1 0.0323743179434933 1 0.0332527458667755 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882565 chr11:45882561 synonymous SNV . 0 17 hm5C_associated_SNPs_40786 0 0 1 0 1 Nucleus 1 0.500231643890827 1 0.999536712218346 hm5C_site_40001 DeepMRMD:1;iRNA_m5C:0.999536712218346 40002 chr11 45882561 45882561 1 + C T UCEC 45882566 + 45882546 45882586 41 CGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG CGACGAGACCTACGGTGTGCCCTCCCTGGAGGAGCTGGGTG < 41bp 1 0.0480477024650461 1 0.0466641783714294 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882566 chr11:45882561 synonymous SNV . 0 16 hm5C_associated_SNPs_40787 0 0 1 0 1 Nucleus 1 0.500231643691815 1 0.99953671261637 hm5C_site_40002 DeepMRMD:1;iRNA_m5C:0.99953671261637 40003 chr19 39944012 39944012 1 + G A UCEC 39944021 + 39944001 39944041 41 CGAAGAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAG CGAAGAGCGGCAGAGTGCAGCGGGCAGTGAGAAAGAAGAAG < 41bp 1 0.576859388457796 1 0.850392460823059 experiment 0.846281223084407 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944021 chr19:39944012 nonsynonymous SNV 0.827 1 12 hm5C_associated_SNPs_40789 0 0 1 0 1 Nucleus 1 0.500231643936027 0.299215078353882 0.999536712127945 hm5C_site_40003 DeepMRMD:0.299215078353882;iRNA_m5C:0.999536712127945 40004 chr19 39944012 39944012 1 + G A UCEC 39944025 + 39944005 39944045 41 GAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC GAGCGGCAGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC < 41bp 1 0.322095384275617 1 0.377170979976654 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944025 chr19:39944012 nonsynonymous SNV 0.827 1 8 hm5C_associated_SNPs_40790 0 0 1 0 1 Nucleus 1 0.500231607567113 1 0.999536784865774 hm5C_site_40004 DeepMRMD:1;iRNA_m5C:0.999536784865774 40005 chr6 155154527 155154527 1 + T C UCEC 155154525 + 155154505 155154545 41 AAGCACAGAAACTGAGGGGACATAATCATCACTCAGTAGGT AAGCACAGAAACTGAGGGGACACAATCATCACTCAGTAGGT < 41bp 1 0.357933100650755 1 0.276166796684265 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155154525 chr6:155154527 stoploss 1.000 0 23 hm5C_associated_SNPs_40791 0 0 1 0 1 Nucleus 1 0.50023163559677 1 0.999536728806461 hm5C_site_40005 DeepMRMD:1;iRNA_m5C:0.999536728806461 40006 chr4 1806243 1806243 1 + G A UCEC 1806242 + 1806222 1806262 41 TCTCCCGCTTCCCGCTCAAGCGACAGGTAACAGAAAGTAGA TCTCCCGCTTCCCGCTCAAGCAACAGGTAACAGAAAGTAGA < 41bp 1 0.54136770529949 1 0.531539916992188 experiment 0.91726458940102 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1806242 chr4:1806243 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_40792 1 0 0 0 1 Ribosome 1 0.500231643849248 0.936920166015624 0.999536712301503 hm5C_site_40006 DeepMRMD:0.936920166015624;iRNA_m5C:0.999536712301503 not specified not specified 40007 chr7 150769170 150769170 1 + G A UCEC 150769166 + 150769146 150769186 41 TCCCGCTTCACCCAGGAGATCTTCGCCTTCTTGATCTCACT TCCCGCTTCACCCAGGAGATCTTCACCTTCTTGATCTCACT < 41bp 1 0.116237424840985 1 0.0549403727054596 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150769166 chr7:150769170 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_40793 0 0 1 0 1 Ribosome 1 0.500231643922644 1 0.999536712154712 hm5C_site_40007 DeepMRMD:1;iRNA_m5C:0.999536712154712 40008 chr17 18137994 18137994 1 + T G UCEC 18138006 + 18137986 18138026 41 AACAAGATTCTGTGGCGGAACTGTGAATCTGGGTAGGTCGA AACAAGATGCTGTGGCGGAACTGTGAATCTGGGTAGGTCGA < 41bp 1 0.304845109998648 1 0.492230206727982 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18138006 chr17:18137994 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_40794 0 0 1 0 2 Cytosol 1 0.500231643920898 1 0.999536712158203 hm5C_site_40008 DeepMRMD:1;iRNA_m5C:0.999536712158203 40009 chr17 80529646 80529646 1 + C T UCEC 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGTGATTACG < 41bp 1 0.0837909712623568 1 0.0493823885917664 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529646 nonsynonymous SNV 0.488 5 34 hm5C_associated_SNPs_40795 0 0 1 0 1 Cytosol 1 0.500231500845784 1 0.999536998308433 hm5C_site_40009 DeepMRMD:1;iRNA_m5C:0.999536998308433 40010 chr8 17810632 17810632 1 + A C UCEC 17810614 + 17810594 17810634 41 TTTTTAGCAAAATGAGAGTGCTACAGGAAAAGAAACAAAAA TTTTTAGCAAAATGAGAGTGCTACAGGAAAAGAAACAACAA < 41bp 1 0.519241238290571 1 0.387739539146423 experiment 0.961517523418858 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17810614 chr8:17810632 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_40796 0 0 1 0 0 Nucleus 1 0.500231455400822 1 0.999537089198355 hm5C_site_40010 DeepMRMD:1;iRNA_m5C:0.999537089198355 40011 chr20 49197898 49197898 1 + C T UCEC 49197914 + 49197894 49197934 41 TGCCCGAGAAGGACGAGGACCATGCACTGAGTTACTGGAAG TGCCTGAGAAGGACGAGGACCATGCACTGAGTTACTGGAAG < 41bp 1 0.147973924630013 1 0.274630486965179 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49197914 chr20:49197898 synonymous SNV . 0 5 hm5C_associated_SNPs_40797 0 0 1 0 1 Ribosome 1 0.500231579534056 1 0.999536840931889 hm5C_site_40011 DeepMRMD:1;iRNA_m5C:0.999536840931889 40012 chr20 19970854 19970854 1 + T C UCEC 19970861 + 19970841 19970881 41 GAGAAAATCAAAGTCAAGTTCATGACCATGCAGAAGATGTA GAGAAAATCAAAGCCAAGTTCATGACCATGCAGAAGATGTA < 41bp 1 0.431676779759301 1 0.237741053104401 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN2 ENSG00000132669 CDS Human protein_coding chr20:19970861 chr20:19970854 nonsynonymous SNV 0.998 0 14 hm5C_associated_SNPs_40798 0 0 0 0 0 Nucleus 1 0.500231802330687 1 0.999536395338627 hm5C_site_40012 DeepMRMD:1;iRNA_m5C:0.999536395338627 40013 chr15 64410413 64410413 1 + T G UCEC 64410406 + 64410386 64410426 41 TTCTCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCC TTCTCTTCCTCCTCAGGAAGCCACAAAGTCTTCGAAGCCCC < 41bp 1 0.263900219258328 1 0.174763232469559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410406 chr15:64410413 nonsynonymous SNV 0.972 0 28 hm5C_associated_SNPs_40799 0 0 1 0 3 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_40013 DeepMRMD:1;iRNA_m5C:0.999536712157815 40014 chr15 64410413 64410413 1 + T G UCEC 64410409 + 64410389 64410429 41 TCTTCCTCCTCAGGAAGCCACAAATTCTTCGAAGCCCCAGC TCTTCCTCCTCAGGAAGCCACAAAGTCTTCGAAGCCCCAGC < 41bp 1 0.338281142746099 1 0.574059844017029 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64410409 chr15:64410413 nonsynonymous SNV 0.972 0 25 hm5C_associated_SNPs_40800 0 0 1 0 3 Ribosome 1 0.500231643921092 0.851880311965942 0.999536712157815 hm5C_site_40014 DeepMRMD:0.851880311965942;iRNA_m5C:0.999536712157815 40015 chr7 2473386 2473386 1 + G T UCEC 2473368 + 2473348 2473388 41 GGACCGGCAGCTCCGCTTCCCCCCGAGCTACCGGAACAGGA GGACCGGCAGCTCCGCTTCCCCCCGAGCTACCGGAACATGA < 41bp 1 0.355585641356686 1 0.0731455087661743 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHST12 ENSG00000136213 CDS Human protein_coding chr7:2473368 chr7:2473386 nonsynonymous SNV 0.952 4 39 hm5C_associated_SNPs_40801 0 0 1 0 0 nucleolus 1 0.500231693379908 1 0.999536613240185 hm5C_site_40015 DeepMRMD:1;iRNA_m5C:0.999536613240185 40016 chr1 43162425 43162425 1 + G A UCEC 43162444 + 43162424 43162464 41 CGCAATTACCAGCAAAATTACCAGAATAGTGAGAGTGGGGA CACAATTACCAGCAAAATTACCAGAATAGTGAGAGTGGGGA < 41bp 1 0.532414489341445 1 0.206440895795822 experiment 0.93517102131711 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout YBX1 ENSG00000065978 CDS Human protein_coding chr1:43162444 chr1:43162425 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_40802 0 0 1 0 0 Cytosol 1 0.500231643276619 1 0.999536713446762 hm5C_site_40016 DeepMRMD:1;iRNA_m5C:0.999536713446762 40017 chr12 50480641 50480641 1 + G A UCEC 50480623 + 50480603 50480643 41 ACCAGACTATCATGAGGAAACGGCTAGATATCCAAGAGGCC ACCAGACTATCATGAGGAAACGGCTAGATATCCAAGAGACC < 41bp 1 0.357491729733162 1 0.289781153202057 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50480623 chr12:50480641 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_40803 0 0 1 0 1 Cytosol 1 0.500231643587297 1 0.999536712825406 hm5C_site_40017 DeepMRMD:1;iRNA_m5C:0.999536712825406 40018 chr9 130420674 130420674 1 + C T UCEC 130420683 + 130420663 130420703 41 ATATCAATAAGCGCAGAGAGCCGCTCCCCAGCCTGGAGGCT ATATCAATAAGTGCAGAGAGCCGCTCCCCAGCCTGGAGGCT < 41bp 1 0.0948721698619646 1 0.0952309966087341 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420683 chr9:130420674 nonsynonymous SNV 0.995 3 12 hm5C_associated_SNPs_40804 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_40018 DeepMRMD:1;iRNA_m5C:0.999536712157815 40019 chr10 73562753 73562753 1 + G A UCEC 73562773 + 73562753 73562793 41 GGTCATCACCATGATGGCCACTGACCAGGATGAAGGTCCCA AGTCATCACCATGATGGCCACTGACCAGGATGAAGGTCCCA < 41bp 1 0.0862959070468748 1 0.0860834717750549 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73562773 chr10:73562753 synonymous SNV . 0 1 hm5C_associated_SNPs_40805 0 0 0 0 2 exosome 1 0.500306782199361 1 0.999386435601278 hm5C_site_40019 DeepMRMD:1;iRNA_m5C:0.999386435601278 40020 chr7 100732045 100732045 1 + C A UCEC 100732032 + 100732012 100732052 41 GCCCAGCCCAGCCCTGGGGCCGAATCTGGACGGCTCTGGCC GCCCAGCCCAGCCCTGGGGCCGAATCTGGACGGATCTGGCC < 41bp 1 0.226365789428311 1 0.183794647455215 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100732032 chr7:100732045 synonymous SNV . 0 34 hm5C_associated_SNPs_40806 0 0 1 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40020 DeepMRMD:1;iRNA_m5C:0.999536712157815 40021 chrX 69639541 69639541 1 + G T UCEC 69639552 + 69639532 69639572 41 CGGACCCAGGATTCCGAAGGCTCCTTCAAACTGGAGGATCC CGGACCCAGTATTCCGAAGGCTCCTTCAAACTGGAGGATCC < 41bp 1 0.307855501170317 1 0.342208862304688 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639552 chrX:69639541 nonsynonymous SNV 0.981 2 10 hm5C_associated_SNPs_40807 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_40021 DeepMRMD:1;iRNA_m5C:0.999536712157815 40022 chr17 38249485 38249485 1 + G T UCEC 38249489 + 38249469 38249509 41 CGAAGAGCCCGCAGCAGCGTCTCCTGGAGCTGCTCCACCGA CGAAGAGCCCGCAGCATCGTCTCCTGGAGCTGCTCCACCGA < 41bp 1 0.637492151414814 1 0.748814105987549 experiment 0.725015697170373 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NR1D1;THRA ENSG00000126351;ENSG00000126368 CDS Human other chr17:38249489 chr17:38249485 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_40808 0 0 0 0 1 unknown 1 0.500231707220426 0.502371788024902 0.999536585559148 hm5C_site_40022 DeepMRMD:0.502371788024902;iRNA_m5C:0.999536585559148 40023 chr5 134099692 134099692 1 + G A UCEC 134099687 + 134099667 134099707 41 AGAAGTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGA AGAAGTAAACGTGGAGATGACAGACAGTCTAGAAGTAGAGA < 41bp 1 0.446685003632258 1 0.163330644369125 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099687 chr5:134099692 nonsynonymous SNV 0.989 2 26 hm5C_associated_SNPs_40810 0 0 1 0 2 Cytosol 1 0.500231643928591 1 0.999536712142819 hm5C_site_40023 DeepMRMD:1;iRNA_m5C:0.999536712142819 40024 chr5 134099692 134099692 1 + G A UCEC 134099691 + 134099671 134099711 41 GTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGATAGA GTAAACGTGGAGATGACAGACAGTCTAGAAGTAGAGATAGA < 41bp 1 0.320766171637632 1 0.453195571899414 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099691 chr5:134099692 nonsynonymous SNV 0.989 2 22 hm5C_associated_SNPs_40811 0 0 1 0 2 Cytosol 1 0.500230700104689 1 0.999538599790621 hm5C_site_40024 DeepMRMD:1;iRNA_m5C:0.999538599790621 40025 chr3 188242461 188242461 1 + C T UCEC 188242472 + 188242452 188242492 41 GGGGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCA GGGGAATCCTGGAGGCAAGACACTTGAGGAGAGGCGCTCCA < 41bp 1 0.179251537034509 1 0.0409992039203644 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPP ENSG00000145012 CDS Human protein_coding chr3:188242472 chr3:188242461 synonymous SNV . 0 10 hm5C_associated_SNPs_40812 0 0 1 0 1 Cytosol 1 0.500231649012645 1 0.999536701974709 hm5C_site_40025 DeepMRMD:1;iRNA_m5C:0.999536701974709 40026 chr2 27459283 27459283 1 + C T UCEC 27459284 + 27459264 27459304 41 CAATGCGTGGAGCTGGGGGCCGGCGTCTCTCTTCCTTTGTC CAATGCGTGGAGCTGGGGGTCGGCGTCTCTCTTCCTTTGTC < 41bp 1 0.566667113764253 1 0.817685186862946 experiment 0.866665772471493 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27459284 chr2:27459283 synonymous SNV . 0 20 hm5C_associated_SNPs_40813 0 0 1 0 0 Exosome 1 0.500231643914062 0.364629626274108 0.999536712171876 hm5C_site_40026 DeepMRMD:0.364629626274108;iRNA_m5C:0.999536712171876 40027 chrX 153627880 153627880 1 + G A UCEC 153627896 + 153627876 153627916 41 ATGAGTTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT ATGAATTTCCGCTTTGTGGCCACATGGTGTCAGATGAATAT < 41bp 1 0.251642852405071 1 0.523244261741638 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627896 chrX:153627880 synonymous SNV . 0 5 hm5C_associated_SNPs_40816 0 0 1 0 2 Cytosol 1 0.500247303204783 0.953511476516724 0.999505393590434 hm5C_site_40027 DeepMRMD:0.953511476516724;iRNA_m5C:0.999505393590434 40028 chr5 132203231 132203231 1 + G T UCEC 132203216 + 132203196 132203236 41 TCTTATCTACACATGGGGGACTGAAGAGTTCGAGAGATCCA TCTTATCTACACATGGGGGACTGAAGAGTTCGAGATATCCA < 41bp 1 0.593511754766195 1 0.231553018093109 experiment 0.81297649046761 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UQCRQ ENSG00000164405 CDS Human protein_coding chr5:132203216 chr5:132203231 nonsynonymous SNV 0.808 1 36 hm5C_associated_SNPs_40817 0 0 1 0 0 Cytosol 1 0.500231629155781 1 0.999536741688438 hm5C_site_40028 DeepMRMD:1;iRNA_m5C:0.999536741688438 40029 chr17 66039322 66039322 1 + G A UCEC 66039310 + 66039290 66039330 41 TGCTGTTGAGCAGATTCTTCCTACCTTAGTTCGGCTCCTGC TGCTGTTGAGCAGATTCTTCCTACCTTAGTTCAGCTCCTGC < 41bp 1 0.355320707518841 1 0.19946151971817 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66039310 chr17:66039322 nonsynonymous SNV 0.951 0 33 hm5C_associated_SNPs_40818 0 0 1 0 0 Cytosol 1 0.500231525267378 1 0.999536949465244 hm5C_site_40029 DeepMRMD:1;iRNA_m5C:0.999536949465244 40030 chr14 75359606 75359606 1 + C T UCEC 75359614 + 75359594 75359634 41 AACCTACAGCAGCGGCAGTTCCTCCCCCTGCAGCACCCATA AACCTACAGCAGTGGCAGTTCCTCCCCCTGCAGCACCCATA < 41bp 1 0.127526255745131 1 0.203304588794708 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359614 chr14:75359606 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_40819 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40030 DeepMRMD:1;iRNA_m5C:0.999536712157815 40031 chr20 34776333 34776333 1 + G A UCEC 34776322 + 34776302 34776342 41 TGTGCCAATGGCCTGCTCATCTACCGGGACCGGCTGAGAAT TGTGCCAATGGCCTGCTCATCTACCGGGACCAGCTGAGAAT < 41bp 1 0.364598953890169 1 0.166020840406418 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPB41L1 ENSG00000088367 CDS Human protein_coding chr20:34776322 chr20:34776333 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_40820 0 0 1 0 2 Cytoplasm 1 0.500231643921284 1 0.999536712157431 hm5C_site_40031 DeepMRMD:1;iRNA_m5C:0.999536712157431 40032 chr10 91177149 91177149 1 + G T UCEC 91177165 + 91177145 91177185 41 AAAAGGCCAAAATAAAGACGCCCTTGAGTGCTTGGAACAAG AAAATGCCAAAATAAAGACGCCCTTGAGTGCTTGGAACAAG < 41bp 1 0.06640668556516 1 0.0627225041389465 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFIT5 ENSG00000152778 CDS Human protein_coding chr10:91177165 chr10:91177149 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_40821 0 0 0 0 0 exosome 1 0.500231630583393 1 0.999536738833215 hm5C_site_40032 DeepMRMD:1;iRNA_m5C:0.999536738833215 40033 chr1 29651769 29651769 1 + C T UCEC 29651781 + 29651761 29651801 41 CGCTGCCACAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC CGCTGCCATAACTTGGTGGACGTTTTCTTTGCTGCCAAAAC < 41bp 1 0.0454215856983926 1 0.0421985983848572 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPRU ENSG00000060656 CDS Human protein_coding chr1:29651781 chr1:29651769 synonymous SNV . 0 9 hm5C_associated_SNPs_40822 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644372386 1 0.999536711255228 hm5C_site_40033 DeepMRMD:1;iRNA_m5C:0.999536711255228 40034 chrX 205491 205491 1 + G A UCEC 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTACCCTGCATCACGCGCCCTGTCGTGCTGAA < 41bp 1 0.405765583124037 1 0.0931351780891418 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205491 synonymous SNV . 0 12 hm5C_associated_SNPs_40823 0 0 1 0 2 Cytosol 1 0.500231643748559 1 0.999536712502882 hm5C_site_40034 DeepMRMD:1;iRNA_m5C:0.999536712502882 40035 chr5 1036466 1036466 1 + G A UCEC 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCAG < 41bp 1 0.21218743049096 1 0.086009293794632 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036466 nonsynonymous SNV 0.953 3 40 hm5C_associated_SNPs_40824 0 0 0 0 2 exosome 1 0.500231643921348 1 0.999536712157304 hm5C_site_40035 DeepMRMD:1;iRNA_m5C:0.999536712157304 40036 chr5 1036466 1036466 1 + G A UCEC 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCAGG < 41bp 1 0.549084153096973 1 0.142150312662125 experiment 0.901831693806054 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036466 nonsynonymous SNV 0.953 3 39 hm5C_associated_SNPs_40825 0 0 0 0 2 exosome 1 0.500231724860672 1 0.999536550278656 hm5C_site_40036 DeepMRMD:1;iRNA_m5C:0.999536550278656 40037 chr12 32138431 32138431 1 + C T UCEC 32138422 + 32138402 32138442 41 TCTAAAGAATCATTAAATGGCTTGACAAGCCATGGTAAAAA TCTAAAGAATCATTAAATGGCTTGACAAGTCATGGTAAAAA < 41bp 1 0.410179013620775 1 0.0827826857566833 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA1551 ENSG00000174718 CDS Human protein_coding chr12:32138422 chr12:32138431 synonymous SNV . 0 30 hm5C_associated_SNPs_40826 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_40037 DeepMRMD:1;iRNA_m5C:0.999536712157815 40038 chr21 30701856 30701856 1 + G T UCEC 30701844 + 30701824 30701864 41 ATGCACAACGGATAATTTCACTGTCTCGAAATGATTTTCAG ATGCACAACGGATAATTTCACTGTCTCGAAATTATTTTCAG < 41bp 1 0.18615424874551 1 0.160888373851776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BACH1 ENSG00000156273 CDS Human protein_coding chr21:30701844 chr21:30701856 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_40828 0 0 1 0 1 Cytosol 1 0.500231643263979 1 0.999536713472041 hm5C_site_40038 DeepMRMD:1;iRNA_m5C:0.999536713472041 40039 chr5 70952650 70952650 1 + C T UCEC 70952640 + 70952620 70952660 41 GTCTCAGTTTTAGTGCAGCCCTCAACGCACCAATAGAGAAG GTCTCAGTTTTAGTGCAGCCCTCAACGCACTAATAGAGAAG < 41bp 1 0.545445611118612 1 0.579644799232483 experiment 0.909108777762775 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70952640 chr5:70952650 nonsynonymous SNV 0.221 4 31 hm5C_associated_SNPs_40829 0 0 1 0 0 Ribosome 1 0.500231643924147 0.840710401535034 0.999536712151706 hm5C_site_40039 DeepMRMD:0.840710401535034;iRNA_m5C:0.999536712151706 40040 chr12 54741614 54741614 1 + A C UCEC 54741594 + 54741574 54741614 41 TGCTGGAGAACATGGAGGGGCTGTTCTTGGCTGTGGATGAA TGCTGGAGAACATGGAGGGGCTGTTCTTGGCTGTGGATGAC < 41bp 1 0.235527985289289 1 0.0965057909488678 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control COPZ1 ENSG00000111481 CDS Human protein_coding chr12:54741594 chr12:54741614 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_40830 0 0 1 0 1 Cytosol 1 0.500231528991114 1 0.999536942017772 hm5C_site_40040 DeepMRMD:1;iRNA_m5C:0.999536942017772 40041 chr12 54741614 54741614 1 + A C UCEC 54741599 + 54741579 54741619 41 GAGAACATGGAGGGGCTGTTCTTGGCTGTGGATGAAATTGT GAGAACATGGAGGGGCTGTTCTTGGCTGTGGATGACATTGT < 41bp 1 0.668352771463389 1 0.135548114776611 experiment 0.663294457073222 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control COPZ1 ENSG00000111481 CDS Human protein_coding chr12:54741599 chr12:54741614 nonsynonymous SNV 0.999 4 36 hm5C_associated_SNPs_40831 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40041 DeepMRMD:1;iRNA_m5C:0.999536712157815 40042 chr11 119001568 119001568 1 + C T UCEC 119001554 + 119001534 119001574 41 AGCTGAAACAGTGGGGGCTGCAGGCCTTGCAAAGCCAGGCT AGCTGAAACAGTGGGGGCTGCAGGCCTTGCAAAGTCAGGCT < 41bp 1 0.669616775152656 1 0.704294264316559 experiment 0.660766449694689 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HINFP ENSG00000172273 CDS Human protein_coding chr11:119001554 chr11:119001568 synonymous SNV . 0 35 hm5C_associated_SNPs_40833 0 0 1 0 1 Cytosol 1 0.500231643634062 0.591411471366882 0.999536712731876 hm5C_site_40042 DeepMRMD:0.591411471366882;iRNA_m5C:0.999536712731876 40043 chr3 193336673 193336673 1 + C T UCEC 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCGGAAGAAATGGCGTTTAGAGCAACAGATCGTG < 41bp 1 0.0753029788701268 1 0.0235563814640045 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336673 nonsynonymous SNV 0.989 1 18 hm5C_associated_SNPs_40834 0 0 0 0 2 Nucleus 1 0.500231595521133 1 0.999536808957735 hm5C_site_40043 DeepMRMD:1;iRNA_m5C:0.999536808957735 40044 chr14 71444272 71444272 1 + C A UCEC 71444269 + 71444249 71444289 41 AGCTATAAAAGTGAGCAGACCAGCTCAACTCACATAGAGAG AGCTATAAAAGTGAGCAGACCAGATCAACTCACATAGAGAG < 41bp 1 0.137473781270464 1 0.593022167682648 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71444269 chr14:71444272 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_40835 0 0 1 0 0 Endoplasmic reticulum 1 0.500231647368958 0.813955664634704 0.999536705262084 hm5C_site_40044 DeepMRMD:0.813955664634704;iRNA_m5C:0.999536705262084 40045 chr17 65722751 65722751 1 + A G UCEC 65722746 + 65722726 65722766 41 ACGTCGCAGTCCTAGGAAGTCCACTAGCAGCTTCTAAGGGT ACGTCGCAGTCCTAGGAAGTCCACTGGCAGCTTCTAAGGGT < 41bp 1 0.502566150478456 1 0.319453001022339 experiment 0.994867699043089 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65722746 chr17:65722751 synonymous SNV . 0 26 hm5C_associated_SNPs_40836 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40045 DeepMRMD:1;iRNA_m5C:0.999536712157815 40046 chr8 1806233 1806233 1 + G A UCEC 1806226 + 1806206 1806246 41 CCAGAAGCGGACAGACAGGCCCCATCCGCCCCTGAGACAGG CCAGAAGCGGACAGACAGGCCCCATCCACCCCTGAGACAGG < 41bp 1 0.09477681258586 1 0.115866780281067 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1806226 chr8:1806233 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_40837 0 0 1 0 1 Nucleus 1 0.500231643811797 1 0.999536712376407 hm5C_site_40046 DeepMRMD:1;iRNA_m5C:0.999536712376407 40047 chr2 33526656 33526656 1 + T C UCEC 33526650 + 33526630 33526670 41 CAGTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGA CAGTGCAGGAACACTGAGGGCTCTTTCCAATGTGTGTGTGA < 41bp 1 0.101843009562702 1 0.0892471373081207 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526650 chr2:33526656 synonymous SNV . 0 27 hm5C_associated_SNPs_40838 0 0 1 0 2 Endoplasmic reticulum 1 0.500226881991398 1 0.999546236017204 hm5C_site_40047 DeepMRMD:1;iRNA_m5C:0.999546236017204 40048 chr2 33526656 33526656 1 + T C UCEC 33526652 + 33526632 33526672 41 GTGCAGGAACACTGAGGGCTCTTTTCAATGTGTGTGTGACC GTGCAGGAACACTGAGGGCTCTTTCCAATGTGTGTGTGACC < 41bp 1 0.0324034360265821 1 0.0837701857089996 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33526652 chr2:33526656 synonymous SNV . 0 25 hm5C_associated_SNPs_40839 0 0 1 0 2 Endoplasmic reticulum 1 0.500232384753465 1 0.99953523049307 hm5C_site_40048 DeepMRMD:1;iRNA_m5C:0.99953523049307 40049 chr20 1905411 1905411 1 + G A UCEC 1905422 + 1905402 1905442 41 GTCCCTAGAGAACACTGGATCTAATGAACGGAACATCTATA GTCCCTAGAAAACACTGGATCTAATGAACGGAACATCTATA < 41bp 1 0.124118232282606 1 0.0427564680576324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905422 chr20:1905411 synonymous SNV . 0 10 hm5C_associated_SNPs_40841 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40049 DeepMRMD:1;iRNA_m5C:0.999536712157815 40050 chr14 71434932 71434932 1 + G A UCEC 71434922 + 71434902 71434942 41 GTCACGTTTTCAGATTGGATCTGGTTCCTCGCGTCTTGGAA GTCACGTTTTCAGATTGGATCTGGTTCCTCACGTCTTGGAA < 41bp 1 0.181450067259427 1 0.451758801937103 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71434922 chr14:71434932 synonymous SNV . 0 31 hm5C_associated_SNPs_40842 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_40050 DeepMRMD:1;iRNA_m5C:0.999536712157815 40051 chr12 112926254 112926254 1 + A C UCEC 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT CTTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.151390570175195 1 0.0162136256694794 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926254 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_40843 0 0 1 0 2 Ribosome 1 0.500231644685779 1 0.999536710628443 hm5C_site_40051 DeepMRMD:1;iRNA_m5C:0.999536710628443 40052 chr2 153494186 153494186 1 + A G UCEC 153494168 + 153494148 153494188 41 TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG TCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATGAG < 41bp 1 0.18663751799601 1 0.303786516189575 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153494168 chr2:153494186 nonsynonymous SNV 0.986 2 39 hm5C_associated_SNPs_40844 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_40052 DeepMRMD:1;iRNA_m5C:0.999536712157816 40053 chr2 120005513 120005513 1 + C T UCEC 120005510 + 120005490 120005530 41 GCCAGAACAAGTTCTTCAAGCTGCCCGTGTCCGTGGTCAAC GCCAGAACAAGTTCTTCAAGCTGTCCGTGTCCGTGGTCAAC < 41bp 1 0.14620799628848 1 0.0165750682353973 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120005510 chr2:120005513 nonsynonymous SNV 0.963 3 24 hm5C_associated_SNPs_40845 0 0 1 0 0 Ribosome 1 0.50021286132257 1 0.999574277354859 hm5C_site_40053 DeepMRMD:1;iRNA_m5C:0.999574277354859 40054 chr9 114296044 114296044 1 + C A UCEC 114296051 + 114296031 114296071 41 TTGAAGGATGTAGCTGTGAACTTTTCAAGAGGAGAGTGGAA TTGAAGGATGTAGATGTGAACTTTTCAAGAGGAGAGTGGAA < 41bp 1 0.0496633065535918 1 0.0326229929924011 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF483 ENSG00000173258 CDS Human protein_coding chr9:114296051 chr9:114296044 nonsynonymous SNV 0.020 0 14 hm5C_associated_SNPs_40846 0 0 1 0 1 Nucleus 1 0.500231644008187 1 0.999536711983626 hm5C_site_40054 DeepMRMD:1;iRNA_m5C:0.999536711983626 40055 chr16 83948890 83948890 1 + C T UCEC 83948906 + 83948886 83948926 41 AGAACGGGGCGGTGCTGTGGCGCATCAACTGGATGGCGGAT AGAATGGGGCGGTGCTGTGGCGCATCAACTGGATGGCGGAT < 41bp 1 0.428279341804911 1 0.178928971290588 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MLYCD ENSG00000103150 CDS Human protein_coding chr16:83948906 chr16:83948890 synonymous SNV . 0 5 hm5C_associated_SNPs_40847 0 0 0 0 0 nucleolus 1 0.500231643921079 1 0.999536712157842 hm5C_site_40055 DeepMRMD:1;iRNA_m5C:0.999536712157842 40056 chr5 175933841 175933841 1 + C T UCEC 175933855 + 175933835 175933875 41 CCCAGGCGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGCC CCCAGGTGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGCC < 41bp 1 0.103021394415488 1 0.0817488729953766 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAF2 ENSG00000113194 CDS Human protein_coding chr5:175933855 chr5:175933841 stopgain 0.999 1 7 hm5C_associated_SNPs_40849 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_40056 DeepMRMD:1;iRNA_m5C:0.999536712157815 40057 chr6 42974215 42974215 1 + C G UCEC 42974203 + 42974183 42974223 41 GGTGACTTGTTTGACCAGGCCCAGCCGCAGCCCCAGCCCCA GGTGACTTGTTTGACCAGGCCCAGCCGCAGCCGCAGCCCCA < 41bp 1 0.239428079528686 1 0.0734295248985291 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974203 chr6:42974215 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_40850 0 0 1 0 2 Ribosome 1 0.500231662928279 1 0.999536674143441 hm5C_site_40057 DeepMRMD:1;iRNA_m5C:0.999536674143441 40058 chr11 65402558 65402558 1 + G A UCEC 65402544 + 65402524 65402564 41 TTGCCGACATGGACCTGCTTCACCGCGTTGTGGCGCCTGGG TTGCCGACATGGACCTGCTTCACCGCGTTGTGGCACCTGGG < 41bp 1 0.230490657690006 1 0.0934309065341949 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402544 chr11:65402558 synonymous SNV . 0 35 hm5C_associated_SNPs_40851 0 0 1 0 1 Ribosome 1 0.500231603892622 1 0.999536792214756 hm5C_site_40058 DeepMRMD:1;iRNA_m5C:0.999536792214756 40059 chr12 94072686 94072686 1 + G A UCEC 94072701 + 94072681 94072721 41 TCAATGCTCAAACCACAGGCCTCCGGAAAACAATGCTCCTG TCAATACTCAAACCACAGGCCTCCGGAAAACAATGCTCCTG < 41bp 1 0.498938810828685 1 0.773498773574829 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRADD ENSG00000169372 CDS Human protein_coding chr12:94072701 chr12:94072686 nonsynonymous SNV 0.960 1 6 hm5C_associated_SNPs_40853 0 0 1 0 0 Ribosome 1 0.500231643919818 0.453002452850342 0.999536712160364 hm5C_site_40059 DeepMRMD:0.453002452850342;iRNA_m5C:0.999536712160364 40060 chr12 94072686 94072686 1 + G A UCEC 94072703 + 94072683 94072723 41 AATGCTCAAACCACAGGCCTCCGGAAAACAATGCTCCTGCT AATACTCAAACCACAGGCCTCCGGAAAACAATGCTCCTGCT < 41bp 1 0.628378857862658 1 0.592214286327362 experiment 0.743242284274685 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRADD ENSG00000169372 CDS Human protein_coding chr12:94072703 chr12:94072686 nonsynonymous SNV 0.960 1 4 hm5C_associated_SNPs_40854 0 0 1 0 0 Ribosome 1 0.50023164425442 0.815571427345276 0.999536711491161 hm5C_site_40060 DeepMRMD:0.815571427345276;iRNA_m5C:0.999536711491161 40061 chr1 235600751 235600751 1 + G A UCEC 235600742 + 235600722 235600762 41 AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGC AAGCAGAGACGGCGCGACTACTCATTATCACCAGCATTGGC < 41bp 1 0.583092504178278 1 0.0608178377151489 experiment 0.833814991643443 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235600742 chr1:235600751 nonsynonymous SNV 0.019 3 30 hm5C_associated_SNPs_40855 0 0 1 0 0 chromatin 1 0.500227415819581 1 0.999545168360837 hm5C_site_40061 DeepMRMD:1;iRNA_m5C:0.999545168360837 40062 chr1 24996668 24996668 1 + C T UCEC 24996652 + 24996632 24996672 41 GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCCGGGT GTCTGTAAGAAGGGTCTCATCCTCCCGATCTGTCTCTGGGT < 41bp 1 0.164792052211706 1 0.0508123934268951 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996652 chr1:24996668 synonymous SNV . 0 37 hm5C_associated_SNPs_40857 0 0 1 0 1 Cytosol 1 0.500231643939004 1 0.999536712121991 hm5C_site_40062 DeepMRMD:1;iRNA_m5C:0.999536712121991 40063 chr1 24996668 24996668 1 + C T UCEC 24996673 + 24996653 24996693 41 CTCCCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAA CTCCCGATCTGTCTCTGGGTCTCCTGAGCCAGCAGCTAAAA < 41bp 1 0.58067506505866 1 0.0299160182476044 experiment 0.838649869882681 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996673 chr1:24996668 synonymous SNV . 0 16 hm5C_associated_SNPs_40859 0 0 1 0 1 Cytosol 1 0.500231648245959 1 0.999536703508082 hm5C_site_40063 DeepMRMD:1;iRNA_m5C:0.999536703508082 40064 chr1 24996668 24996668 1 + C T UCEC 24996676 + 24996656 24996696 41 CCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGC CCGATCTGTCTCTGGGTCTCCTGAGCCAGCAGCTAAAAAGC < 41bp 1 0.626494829821262 1 0.312501013278961 experiment 0.747010340357475 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996676 chr1:24996668 synonymous SNV . 0 13 hm5C_associated_SNPs_40860 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40064 DeepMRMD:1;iRNA_m5C:0.999536712157815 40065 chr1 24996668 24996668 1 + C T UCEC 24996681 + 24996661 24996701 41 CTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCA CTGTCTCTGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCA < 41bp 1 0.289302244921278 1 0.505124926567078 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996681 chr1:24996668 synonymous SNV . 0 8 hm5C_associated_SNPs_40861 0 0 1 0 1 Cytosol 1 0.500231643921093 0.989750146865844 0.999536712157814 hm5C_site_40065 DeepMRMD:0.989750146865844;iRNA_m5C:0.999536712157814 40066 chr1 24996668 24996668 1 + C T UCEC 24996688 + 24996668 24996708 41 CGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTC TGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTC < 41bp 1 0.656668906896824 1 0.557553887367249 experiment 0.686662186206353 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996688 chr1:24996668 synonymous SNV . 0 1 hm5C_associated_SNPs_40862 0 0 1 0 1 Cytosol 1 0.500231643919091 0.884892225265502 0.999536712161818 hm5C_site_40066 DeepMRMD:0.884892225265502;iRNA_m5C:0.999536712161818 40067 chr16 722956 722956 1 + G A UCEC 722951 + 722931 722971 41 CATTACATGGACGGGCAGACCCCCTGCCTCTTTGTCTCCTC CATTACATGGACGGGCAGACCCCCTACCTCTTTGTCTCCTC < 41bp 1 0.307738712021278 1 0.135344386100769 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722951 chr16:722956 nonsynonymous SNV 0.985 4 26 hm5C_associated_SNPs_40863 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40067 DeepMRMD:1;iRNA_m5C:0.999536712157815 40068 chr9 131847006 131847006 1 + G A UCEC 131846999 + 131846979 131847019 41 AGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCT AGCCTCAGCCCTGTATTTGTCATCGTCAGTTTCGTGACCCT < 41bp 1 0.471203206012283 1 0.371700823307037 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846999 chr9:131847006 nonsynonymous SNV 0.539 1 28 hm5C_associated_SNPs_40864 0 0 1 0 2 Ribosome 1 0.500231643945524 1 0.999536712108951 hm5C_site_40068 DeepMRMD:1;iRNA_m5C:0.999536712108951 40069 chr19 57910651 57910651 1 + C T UCEC 57910662 + 57910642 57910682 41 AGTTCACACCGGAGAAAGACCTTATAAGTGCAATGATTGTG AGTTCACACTGGAGAAAGACCTTATAAGTGCAATGATTGTG < 41bp 1 0.10349403218575 1 0.0632573962211609 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF548 ENSG00000188785 CDS Human protein_coding chr19:57910662 chr19:57910651 synonymous SNV . 0 10 hm5C_associated_SNPs_40865 0 0 0 0 0 Nucleus 1 0.500231643476242 1 0.999536713047516 hm5C_site_40069 DeepMRMD:1;iRNA_m5C:0.999536713047516 40070 chr14 96997923 96997923 1 + G A UCEC 96997917 + 96997897 96997937 41 ATATAAGATGTATAAGAAGTCTTAACGGTATGAGAAAGCCT ATATAAGATGTATAAGAAGTCTTAACAGTATGAGAAAGCCT < 41bp 1 0.245519799920278 1 0.0962882041931152 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:96997917 chr14:96997923 nonsynonymous SNV 0.993 4 27 hm5C_associated_SNPs_40866 0 0 1 0 1 Ribosome 1 0.50023164709039 1 0.99953670581922 hm5C_site_40070 DeepMRMD:1;iRNA_m5C:0.99953670581922 40071 chr16 69726077 69726077 1 + A G UCEC 69726090 + 69726070 69726110 41 CATCACCAAATAGTGTGAGTCAGCTTCAGAATACTATTCAG CATCACCGAATAGTGTGAGTCAGCTTCAGAATACTATTCAG < 41bp 1 0.37524813594162 1 0.719815254211426 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFAT5 ENSG00000102908 CDS Human protein_coding chr16:69726090 chr16:69726077 synonymous SNV . 0 8 hm5C_associated_SNPs_40867 0 0 1 0 0 Nucleus 1 0.500231643825615 0.560369491577148 0.999536712348771 hm5C_site_40071 DeepMRMD:0.560369491577148;iRNA_m5C:0.999536712348771 40072 chr6 106555117 106555117 1 + T C UCEC 106555109 + 106555089 106555129 41 AGTGACAATGCTGACCGGCTCGAGGACGTGGAGGATGACAT AGTGACAATGCTGACCGGCTCGAGGACGCGGAGGATGACAT < 41bp 1 0.595694436379021 1 0.868284463882446 experiment 0.808611127241959 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106555109 chr6:106555117 nonsynonymous SNV 0.785 0 29 hm5C_associated_SNPs_40868 0 0 0 0 0 cytosol 1 0.500231579870045 0.263431072235108 0.99953684025991 hm5C_site_40072 DeepMRMD:0.263431072235108;iRNA_m5C:0.99953684025991 40073 chr1 86048589 86048589 1 + G A UCEC 86048579 + 86048559 86048599 41 TGACCAGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGG TGACCAGGACTGTGAAGATGCGGTTCCGCTACGAAGATGGG < 41bp 1 0.271199392773917 1 0.0992070734500885 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048579 chr1:86048589 nonsynonymous SNV 0.996 5 31 hm5C_associated_SNPs_40869 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643919594 1 0.999536712160812 hm5C_site_40073 DeepMRMD:1;iRNA_m5C:0.999536712160812 40074 chr1 86048589 86048589 1 + G A UCEC 86048584 + 86048564 86048604 41 AGGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGAC AGGACTGTGAAGATGCGGTTCCGCTACGAAGATGGGGAGAC < 41bp 1 0.294784889951706 1 0.0917386710643768 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048584 chr1:86048589 nonsynonymous SNV 0.996 5 26 hm5C_associated_SNPs_40870 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40074 DeepMRMD:1;iRNA_m5C:0.999536712157815 40075 chr1 86048589 86048589 1 + G A UCEC 86048585 + 86048565 86048605 41 GGACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGACA GGACTGTGAAGATGCGGTTCCGCTACGAAGATGGGGAGACA < 41bp 1 0.611712350242429 1 0.195672959089279 experiment 0.776575299515141 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048585 chr1:86048589 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_40871 0 0 1 0 0 Endoplasmic reticulum 1 0.500231658341579 1 0.999536683316841 hm5C_site_40075 DeepMRMD:1;iRNA_m5C:0.999536683316841 40076 chr1 86048589 86048589 1 + G A UCEC 86048587 + 86048567 86048607 41 ACTGTGAAGATGCGGTTCCGCTGCGAAGATGGGGAGACATT ACTGTGAAGATGCGGTTCCGCTACGAAGATGGGGAGACATT < 41bp 1 0.669286816449924 1 0.0844767391681671 experiment 0.661426367100152 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048587 chr1:86048589 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_40872 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164465309 1 0.999536710693821 hm5C_site_40076 DeepMRMD:1;iRNA_m5C:0.999536710693821 40077 chr17 78022552 78022552 1 + C T UCEC 78022532 + 78022512 78022552 41 GGAAGCAGAAGACGAAGGGTCCCAGCTGGTGGTTTTGGACC GGAAGCAGAAGACGAAGGGTCCCAGCTGGTGGTTTTGGACT < 41bp 1 0.207937218512647 1 0.239990025758743 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022532 chr17:78022552 nonsynonymous SNV 0.991 3 41 hm5C_associated_SNPs_40874 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40077 DeepMRMD:1;iRNA_m5C:0.999536712157815 40078 chr12 104336951 104336951 1 + G A UCEC 104336943 + 104336923 104336963 41 GGATGAATACTGTATTCAGGCCCTTCCCGAATTTGATGGGA GGATGAATACTGTATTCAGGCCCTTCCCAAATTTGATGGGA < 41bp 1 0.0737234134917424 1 0.0560506880283356 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104336943 chr12:104336951 nonsynonymous SNV 0.980 2 29 hm5C_associated_SNPs_40875 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40078 DeepMRMD:1;iRNA_m5C:0.999536712157815 40079 chr12 104336951 104336951 1 + G A UCEC 104336944 + 104336924 104336964 41 GATGAATACTGTATTCAGGCCCTTCCCGAATTTGATGGGAA GATGAATACTGTATTCAGGCCCTTCCCAAATTTGATGGGAA < 41bp 1 0.00481567625971354 1 0.0942005217075348 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104336944 chr12:104336951 nonsynonymous SNV 0.980 2 28 hm5C_associated_SNPs_40876 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40079 DeepMRMD:1;iRNA_m5C:0.999536712157815 40080 chr1 228333237 228333237 1 + G T UCEC 228333247 + 228333227 228333267 41 GGCCTGTGGTGCTGAGCGGGCCTTCGGGAGCTGGGAAGAGC GGCCTGTGGTTCTGAGCGGGCCTTCGGGAGCTGGGAAGAGC < 41bp 1 0.0416806172699008 1 0.105187177658081 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333247 chr1:228333237 nonsynonymous SNV 0.775 1 11 hm5C_associated_SNPs_40878 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921055 1 0.99953671215789 hm5C_site_40080 DeepMRMD:1;iRNA_m5C:0.99953671215789 40081 chr3 124351531 124351531 1 + A G UCEC 124351528 + 124351508 124351548 41 GCCTGGGGATGAAACAACCCCTCAGGGAGACAGCGCTGATG GCCTGGGGATGAAACAACCCCTCGGGGAGACAGCGCTGATG < 41bp 1 0.543579802470119 1 0.625898838043213 experiment 0.912840395059762 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124351528 chr3:124351531 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_40879 0 0 1 0 1 nucleoplasm 1 0.500231643921086 0.748202323913574 0.999536712157827 hm5C_site_40081 DeepMRMD:0.748202323913574;iRNA_m5C:0.999536712157827 40082 chr16 83948905 83948905 1 + G A UCEC 83948906 + 83948886 83948926 41 AGAACGGGGCGGTGCTGTGGCGCATCAACTGGATGGCGGAT AGAACGGGGCGGTGCTGTGACGCATCAACTGGATGGCGGAT < 41bp 1 0.488011034250565 1 0.158636450767517 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MLYCD ENSG00000103150 CDS Human protein_coding chr16:83948906 chr16:83948905 stopgain 0.968 1 20 hm5C_associated_SNPs_40880 0 0 0 0 0 nucleolus 1 0.500231643681248 1 0.999536712637504 hm5C_site_40082 DeepMRMD:1;iRNA_m5C:0.999536712637504 40083 chr11 43465656 43465656 1 + A G UCEC 43465648 + 43465628 43465668 41 TAAAGAAACCCAAAGGAGATCATAAGAAAACTCCTGGGAAA TAAAGAAACCCAAAGGAGATCATAAGAAGACTCCTGGGAAA < 41bp 1 0.412525968430631 1 0.347854942083359 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTC17 ENSG00000052841 CDS Human protein_coding chr11:43465648 chr11:43465656 synonymous SNV . 0 29 hm5C_associated_SNPs_40881 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40083 DeepMRMD:1;iRNA_m5C:0.999536712157815 40084 chr7 98564668 98564668 1 + C T UCEC 98564687 + 98564667 98564707 41 CCTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGATGAT CTTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGATGAT < 41bp 1 0.0105607238212938 1 0.105094760656357 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98564687 chr7:98564668 nonsynonymous SNV 0.992 3 2 hm5C_associated_SNPs_40882 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40084 DeepMRMD:1;iRNA_m5C:0.999536712157815 40085 chr1 155582043 155582043 1 + A G UCEC 155582039 + 155582019 155582059 41 GCGCGAAGGCGGCAGAGCTGCTACAAGATGAATATTCAGGG GCGCGAAGGCGGCAGAGCTGCTACGAGATGAATATTCAGGG < 41bp 1 0.669255442831168 1 0.18413257598877 experiment 0.661489114337664 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582039 chr1:155582043 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_40883 0 0 0 0 2 Ribosome 1 0.500231643470671 1 0.999536713058659 hm5C_site_40085 DeepMRMD:1;iRNA_m5C:0.999536713058659 40086 chr1 44134866 44134866 1 + T C UCEC 44134847 + 44134827 44134867 41 AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCTG AGGAGGTGAGTCAGAGTGAGCTCTTCCCCAAGGAGGATCCG < 41bp 1 0.233157541517163 1 0.0301547050476074 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134847 chr1:44134866 nonsynonymous SNV 0.997 2 40 hm5C_associated_SNPs_40884 0 0 1 0 1 Nucleus 1 0.500231643922624 1 0.999536712154751 hm5C_site_40086 DeepMRMD:1;iRNA_m5C:0.999536712154751 40087 chr1 249211782 249211782 1 + A T UCEC 249211767 + 249211747 249211787 41 AGGAGCTTGGATCTAGGAGGCAGTATGGTAATAAAATTTGT AGGAGCTTGGATCTAGGAGGCAGTATGGTAATAAATTTTGT < 41bp 1 0.50543034311717 1 0.418365806341171 experiment 0.98913931376566 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249211767 chr1:249211782 nonsynonymous SNV 0.906 0 36 hm5C_associated_SNPs_40885 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40087 DeepMRMD:1;iRNA_m5C:0.999536712157815 40088 chr21 47864708 47864708 1 + A G UCEC 47864706 + 47864686 47864726 41 ATTCACCATTTAGAAGTGATCCAGCAAAGATTGGGAGGGGT ATTCACCATTTAGAAGTGATCCGGCAAAGATTGGGAGGGGT < 41bp 1 0.0792635236223007 1 0.486805528402328 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47864706 chr21:47864708 nonsynonymous SNV 0.863 3 23 hm5C_associated_SNPs_40886 0 0 1 0 1 Exosome 1 0.500234134496471 1 0.999531731007057 hm5C_site_40088 DeepMRMD:1;iRNA_m5C:0.999531731007057 40089 chr18 2751374 2751374 1 + A G UCEC 2751377 + 2751357 2751397 41 AGCTGTCTACCAGTGGGAACCGACCCCCAGCAAATGTGAGT AGCTGTCTACCAGTGGGGACCGACCCCCAGCAAATGTGAGT < 41bp 1 0.109474287888026 1 0.286013722419739 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2751377 chr18:2751374 nonsynonymous SNV 0.752 0 18 hm5C_associated_SNPs_40887 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_40089 DeepMRMD:1;iRNA_m5C:0.999536712157814 40090 chr6 43171609 43171609 1 + G A UCEC 43171598 + 43171578 43171618 41 CTGTTTGTTCCCAGACTGAACAGGGTTTTGCGCCACGAGCA CTGTTTGTTCCCAGACTGAACAGGGTTTTGCACCACGAGCA < 41bp 1 0.664495635546627 1 0.705987691879272 experiment 0.671008728906747 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43171598 chr6:43171609 nonsynonymous SNV 0.979 3 32 hm5C_associated_SNPs_40888 0 0 0 0 1 chromatin 1 0.500231643921093 0.588024616241456 0.999536712157815 hm5C_site_40090 DeepMRMD:0.588024616241456;iRNA_m5C:0.999536712157815 40091 chr9 131345012 131345012 1 + C T UCEC 131345031 + 131345011 131345051 41 GCGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC GTGTCGCCGGGCCCAGCTAGCCGATTCTTTCCATCTGCAGC < 41bp 1 0.123077994203053 1 0.0947505533695221 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131345031 chr9:131345012 nonsynonymous SNV 0.952 1 2 hm5C_associated_SNPs_40889 0 0 1 0 1 Nucleus 1 0.500231643923605 1 0.999536712152791 hm5C_site_40091 DeepMRMD:1;iRNA_m5C:0.999536712152791 40092 chr9 18721617 18721617 1 + C T UCEC 18721629 + 18721609 18721649 41 GCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT GCCGCCGGTCCCCACAGCTCCTGAAGTCCTGCAATTTGGAT < 41bp 1 0.412017057892828 1 0.336946308612823 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18721629 chr9:18721617 nonsynonymous SNV 0.998 3 9 hm5C_associated_SNPs_40890 0 0 0 0 2 Nucleus 1 0.500435437274897 1 0.999129125450207 hm5C_site_40092 DeepMRMD:1;iRNA_m5C:0.999129125450207 40093 chr7 4824583 4824583 1 + G A UCEC 4824600 + 4824580 4824620 41 TCCGCCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA TCCACCACCTCCTCTGCCGGCCGCCTGCTGCCGCCCCGGGA < 41bp 1 0.119906848687955 1 0.33564293384552 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824600 chr7:4824583 nonsynonymous SNV 0.036 0 4 hm5C_associated_SNPs_40891 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40093 DeepMRMD:1;iRNA_m5C:0.999536712157815 40094 chr1 109441601 109441601 1 + C T UCEC 109441598 + 109441578 109441618 41 ATTTCTTGGTGAATTTGAAACTGCCTCGGAATACTACAAGT ATTTCTTGGTGAATTTGAAACTGTCTCGGAATACTACAAGT < 41bp 1 0.153424193089249 1 0.121497541666031 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109441598 chr1:109441601 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_40892 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921062 1 0.999536712157876 hm5C_site_40094 DeepMRMD:1;iRNA_m5C:0.999536712157876 40095 chr6 29911263 29911263 1 + T C UCEC 29911265 + 29911245 29911285 41 GCCTACCTGGATGGCACGTGCGTGGAGTGGCTCCGCAGATA GCCTACCTGGATGGCACGCGCGTGGAGTGGCTCCGCAGATA < 41bp 1 0.606916280868173 1 0.511029720306396 experiment 0.786167438263655 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911265 chr6:29911263 nonsynonymous SNV 0.002 3 19 hm5C_associated_SNPs_40894 0 0 0 0 1 Endoplasmic reticulum 1 0.500231645022063 0.977940559387208 0.999536709955875 hm5C_site_40095 DeepMRMD:0.977940559387208;iRNA_m5C:0.999536709955875 40096 chr6 29911263 29911263 1 + T C UCEC 29911277 + 29911257 29911297 41 GGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG GGCACGCGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGG < 41bp 1 0.58441391013729 1 0.215847432613373 experiment 0.831172179725421 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911277 chr6:29911263 nonsynonymous SNV 0.002 3 7 hm5C_associated_SNPs_40895 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921755 1 0.99953671215649 hm5C_site_40096 DeepMRMD:1;iRNA_m5C:0.99953671215649 40097 chr6 29911263 29911263 1 + T C UCEC 29911278 + 29911258 29911298 41 GCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG GCACGCGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGG < 41bp 1 0.443115399613905 1 0.345074534416199 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911278 chr6:29911263 nonsynonymous SNV 0.002 3 6 hm5C_associated_SNPs_40896 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921129 1 0.999536712157742 hm5C_site_40097 DeepMRMD:1;iRNA_m5C:0.999536712157742 40098 chr1 156142788 156142788 1 + C A UCEC 156142796 + 156142776 156142816 41 CTTGTCATGTACCTGGGAACCAGTGAGTAAAGAGTTCCGGG CTTGTCATGTACATGGGAACCAGTGAGTAAAGAGTTCCGGG < 41bp 1 0.5032051120768 1 0.548011898994446 experiment 0.9935897758464 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142796 chr1:156142788 nonsynonymous SNV 0.995 4 13 hm5C_associated_SNPs_40897 0 0 0 0 1 exosome 1 0.500231643921092 0.903976202011108 0.999536712157815 hm5C_site_40098 DeepMRMD:0.903976202011108;iRNA_m5C:0.999536712157815 40099 chr1 172356315 172356315 1 + T C UCEC 172356326 + 172356306 172356346 41 CAGTTGTATTCTTCAGAGGACCAAAATACCCTGATGGAGGA CAGTTGTATCCTTCAGAGGACCAAAATACCCTGATGGAGGA < 41bp 1 0.146137371551406 1 0.216324746608734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNM3 ENSG00000197959 CDS Human protein_coding chr1:172356326 chr1:172356315 nonsynonymous SNV 0.848 3 10 hm5C_associated_SNPs_40898 0 0 0 0 1 nucleus 1 0.500231643921236 1 0.999536712157528 hm5C_site_40099 DeepMRMD:1;iRNA_m5C:0.999536712157528 40100 chr13 39454737 39454737 1 + C T UCEC 39454741 + 39454721 39454761 41 AACAGCCCCAGCTCTGCAGTCAGCCTGGTCACTGTGGTGGG AACAGCCCCAGCTCTGTAGTCAGCCTGGTCACTGTGGTGGG < 41bp 1 0.250276812403285 1 0.60163825750351 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FREM2 ENSG00000150893 CDS Human protein_coding chr13:39454741 chr13:39454737 nonsynonymous SNV 0.925 0 17 hm5C_associated_SNPs_40899 0 0 0 0 0 exosome 1 0.500231643921092 0.79672348499298 0.999536712157815 hm5C_site_40100 DeepMRMD:0.79672348499298;iRNA_m5C:0.999536712157815 40101 chr2 173451088 173451088 1 + G A UCEC 173451098 + 173451078 173451118 41 CCAAGACCTCGTGTTGAGACCTCCCGCGCAGTGCCTCTGGT CCAAGACCTCATGTTGAGACCTCCCGCGCAGTGCCTCTGGT < 41bp 1 0.336605043109947 1 0.578772306442261 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK1 ENSG00000152256 CDS Human protein_coding chr2:173451098 chr2:173451088 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_40901 0 0 1 0 2 Ribosome 1 0.500231913699936 0.842455387115478 0.999536172600128 hm5C_site_40101 DeepMRMD:0.842455387115478;iRNA_m5C:0.999536172600128 40102 chr19 16212141 16212141 1 + A G UCEC 16212142 + 16212122 16212162 41 TGGATCAGACACTAAACGAACTTAACTGTATATAAGCAAAA TGGATCAGACACTAAACGAGCTTAACTGTATATAAGCAAAA < 41bp 1 0.133095686217058 1 0.0434053540229797 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM4 ENSG00000167460 CDS Human protein_coding chr19:16212142 chr19:16212141 synonymous SNV . 0 20 hm5C_associated_SNPs_40902 0 0 1 0 1 Ribosome 1 0.500231643931224 1 0.999536712137552 hm5C_site_40102 DeepMRMD:1;iRNA_m5C:0.999536712137552 40103 chr3 124456805 124456805 1 + C A UCEC 124456785 + 124456765 124456805 41 GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGCC GCACCCAAAGAACTCAGCTTCGGTGCACGTGCAGAGCTGCA < 41bp 1 0.372816513952122 1 0.712706387042999 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UMPS ENSG00000114491 CDS Human protein_coding chr3:124456785 chr3:124456805 nonsynonymous SNV 0.977 4 41 hm5C_associated_SNPs_40903 0 0 1 0 1 Ribosome 1 0.500231644171257 0.574587225914002 0.999536711657486 hm5C_site_40103 DeepMRMD:0.574587225914002;iRNA_m5C:0.999536711657486 40104 chr7 100485401 100485401 1 + T C UCEC 100485418 + 100485398 100485438 41 GTTTTTTAACAACTTCCTCACTGATGCTAAGCGCCCAGCTC GTTCTTTAACAACTTCCTCACTGATGCTAAGCGCCCAGCTC < 41bp 1 0.452017657468382 1 0.221474021673203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100485418 chr7:100485401 synonymous SNV . 0 4 hm5C_associated_SNPs_40904 0 0 1 0 0 Nucleus 1 0.50023164575678 1 0.99953670848644 hm5C_site_40104 DeepMRMD:1;iRNA_m5C:0.99953670848644 40105 chr14 101327140 101327140 1 + G A UCEC 101327141 + 101327121 101327161 41 CGCCCTCTGACTGATGGACGCCGCTGACCTGGGGTCAGACC CGCCCTCTGACTGATGGACACCGCTGACCTGGGGTCAGACC < 41bp 1 0.347259464035934 1 0.0506080389022827 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MEG3 ENSG00000214548 ncRNA_exonic Human lincRNA chr14:101327141 chr14:101327140 . . 0 20 hm5C_associated_SNPs_40905 0 0 1 0 0 unknown 1 0.500231643167495 1 0.99953671366501 hm5C_site_40105 DeepMRMD:1;iRNA_m5C:0.99953671366501 40106 chrX 73043553 73043553 1 + T C UCEC 73043534 - 73043514 73043554 41 GAAGATACATGCTTCCTGGCCTGATTGAGGAGATGGAAAAT GGAGATACATGCTTCCTGGCCTGATTGAGGAGATGGAAAAT < 41bp 1 0.117141441792782 1 0.124025285243988 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043534 chrX:73043553 . . 0 2 hm5C_associated_SNPs_40906 0 0 1 0 0 unknown 1 0.500182324747533 1 0.999635350504934 hm5C_site_40106 DeepMRMD:1;iRNA_m5C:0.999635350504934 40107 chr16 57485042 57485042 1 + C T UCEC 57485048 + 57485028 57485068 41 GAAGCAGCAGCCTCCCAACTCATTTTCTCAGCAGCATTCTG GAAGCAGCAGCCTCTCAACTCATTTTCTCAGCAGCATTCTG < 41bp 1 0.122779297972581 1 0.039093941450119 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COQ9 ENSG00000088682 CDS Human protein_coding chr16:57485048 chr16:57485042 nonsynonymous SNV 0.022 1 15 hm5C_associated_SNPs_40907 0 0 1 0 2 Ribosome 1 0.50023164392112 1 0.999536712157759 hm5C_site_40107 DeepMRMD:1;iRNA_m5C:0.999536712157759 40108 chr3 184062624 184062624 1 + G A UCEC 184062638 + 184062618 184062658 41 GAGCCAGCCCCCTGCAAGGACTGCCAGCCACTCTGCCCACC GAGCCAACCCCCTGCAAGGACTGCCAGCCACTCTGCCCACC < 41bp 1 0.46408842354658 1 0.0830295085906982 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAM131A ENSG00000175182 CDS Human protein_coding chr3:184062638 chr3:184062624 nonsynonymous SNV 0.840 0 7 hm5C_associated_SNPs_40908 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40108 DeepMRMD:1;iRNA_m5C:0.999536712157815 40109 chr1 57157081 57157081 1 + G A UCEC 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTGATCAACACTCCAACAGATTTTTTTAT < 41bp 1 0.0522560201026635 1 0.164559036493301 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157081 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_40909 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920474 1 0.999536712159053 hm5C_site_40109 DeepMRMD:1;iRNA_m5C:0.999536712159053 40110 chr11 69456142 69456142 1 + A G UCEC 69456153 + 69456133 69456173 41 CCCGATGCCAACCTCCTCAACGACCGGGTGCTGCGGGCCAT CCCGATGCCGACCTCCTCAACGACCGGGTGCTGCGGGCCAT < 41bp 1 0.590969020637776 1 0.0860893726348877 experiment 0.818061958724449 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CCND1 ENSG00000110092 CDS Human protein_coding chr11:69456153 chr11:69456142 nonsynonymous SNV 0.997 1 10 hm5C_associated_SNPs_40911 0 0 1 0 0 Ribosome 1 0.500231643944619 1 0.999536712110762 hm5C_site_40110 DeepMRMD:1;iRNA_m5C:0.999536712110762 40111 chr3 43389389 43389389 1 + T C UCEC 43389379 + 43389359 43389399 41 CAGCTGCAGTAGTTCGGAGACCAGTGATGATGATTCTGAAA CAGCTGCAGTAGTTCGGAGACCAGTGATGACGATTCTGAAA < 41bp 1 0.391500412862882 1 0.251638770103455 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRK ENSG00000163788 CDS Human protein_coding chr3:43389379 chr3:43389389 synonymous SNV . 0 31 hm5C_associated_SNPs_40912 0 0 1 0 0 Cytosol 1 0.500231428513954 1 0.999537142972091 hm5C_site_40111 DeepMRMD:1;iRNA_m5C:0.999537142972091 Mental composite score 40112 chr19 30936064 30936064 1 + C T UCEC 30936065 + 30936045 30936085 41 CTCATGGCCAGGGGCATGGCCATGGAACATGGCTTCTTGTC CTCATGGCCAGGGGCATGGTCATGGAACATGGCTTCTTGTC < 41bp 1 0.413963981542036 1 0.464965343475342 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936065 chr19:30936064 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_40914 0 0 0 0 0 exosome 1 0.500231642939807 1 0.999536714120385 hm5C_site_40112 DeepMRMD:1;iRNA_m5C:0.999536714120385 40113 chr1 17265615 17265615 1 + A G UCEC 17265609 + 17265589 17265629 41 GCTCGCCCTGATCCACTCCGCCCTGCACAAGCGCCAGCTGC GCTCGCCCTGATCCACTCCGCCCTGCGCAAGCGCCAGCTGC < 41bp 1 0.0942279297837288 1 0.12973016500473 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17265609 chr1:17265615 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_40915 0 0 0 0 1 chromatin 1 0.500231907707905 1 0.999536184584191 hm5C_site_40113 DeepMRMD:1;iRNA_m5C:0.999536184584191 40114 chr5 153709232 153709232 1 + G A UCEC 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTATGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA < 41bp 1 0.631806677003144 1 0.932332277297974 experiment 0.736386645993711 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709232 nonsynonymous SNV 0.989 3 5 hm5C_associated_SNPs_40916 0 0 0 0 1 Ribosome 1 0.500208531358529 0.135335445404052 0.999582937282941 hm5C_site_40114 DeepMRMD:0.135335445404052;iRNA_m5C:0.999582937282941 40115 chr11 68115618 68115618 1 + T C UCEC 68115603 + 68115583 68115623 41 GAAGCTGTACTGGACGGACTCAGAGACCAACCGCATCGAGG GAAGCTGTACTGGACGGACTCAGAGACCAACCGCACCGAGG < 41bp 1 0.693462975875694 1 0.900831580162048 experiment 0.613074048248611 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68115603 chr11:68115618 nonsynonymous SNV 0.976 4 36 hm5C_associated_SNPs_40917 0 0 0 0 1 Endoplasmic reticulum 1 0.500231704762849 0.198336839675904 0.999536590474302 hm5C_site_40115 DeepMRMD:0.198336839675904;iRNA_m5C:0.999536590474302 40116 chr21 47983782 47983782 1 + C T UCEC 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG CCCGGTGTGAAGGTCATCATCGCACACACCGAGACCAAAGG < 41bp 1 0.337541345495261 1 0.36799681186676 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983782 synonymous SNV . 0 6 hm5C_associated_SNPs_40918 0 0 1 0 2 Cytosol 1 0.500256759511597 1 0.999486480976806 hm5C_site_40116 DeepMRMD:1;iRNA_m5C:0.999486480976806 40117 chr19 36579985 36579985 1 + T C UCEC 36579965 + 36579945 36579985 41 AGAGACATCCAGATGATCAGCTGTGGGGCTGACAAGAGCAT AGAGACATCCAGATGATCAGCTGTGGGGCTGACAAGAGCAC < 41bp 1 0.287012993918609 1 0.176028609275818 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579965 chr19:36579985 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_40919 0 0 1 0 2 Nucleus 1 0.500224736526747 1 0.999550526946505 hm5C_site_40117 DeepMRMD:1;iRNA_m5C:0.999550526946505 40118 chr7 106826886 106826886 1 + G A UCEC 106826904 + 106826884 106826924 41 TGGCCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC TGACCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC < 41bp 1 0.0991838023245306 1 0.0271297991275787 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826904 chr7:106826886 stopgain 0.999 1 3 hm5C_associated_SNPs_40920 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_40118 DeepMRMD:1;iRNA_m5C:0.999536712157815 40119 chr11 71941191 71941191 1 + C T UCEC 71941211 + 71941191 71941231 41 CCTGACCAAGATTGGGAAGTCACAGAAGTTCACGCTGAGCG TCTGACCAAGATTGGGAAGTCACAGAAGTTCACGCTGAGCG < 41bp 1 0.465026798012366 1 0.43515083193779 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71941211 chr11:71941191 synonymous SNV . 0 1 hm5C_associated_SNPs_40921 0 0 1 0 1 Cytosol 1 0.500232629269626 1 0.999534741460749 hm5C_site_40119 DeepMRMD:1;iRNA_m5C:0.999534741460749 40120 chr19 19627039 19627039 1 + A G UCEC 19627040 + 19627020 19627060 41 GGGACCGGAAGTGTGGGATACTGCGAGTATGGCGGCGTCAA GGGACCGGAAGTGTGGGATGCTGCGAGTATGGCGGCGTCAA < 41bp 1 0.647509977015478 1 0.492052584886551 experiment 0.704980045969044 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19627040 chr19:19627039 nonsynonymous SNV . 0 20 hm5C_associated_SNPs_40922 0 0 1 0 0 Endoplasmic reticulum 1 0.500231641862996 1 0.999536716274008 hm5C_site_40120 DeepMRMD:1;iRNA_m5C:0.999536716274008 40121 chr15 69728968 69728968 1 + A T UCEC 69728948 + 69728928 69728968 41 GCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGATA GCAGAGTTTTCCACCTTTGCCATCATGCGAAATTTTGGATT < 41bp 1 0.5660954831079 1 0.08512082695961 experiment 0.867809033784199 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69728948 chr15:69728968 nonsynonymous SNV 0.991 0 41 hm5C_associated_SNPs_40923 0 0 1 0 2 Nucleus 1 0.500211514806194 1 0.999576970387611 hm5C_site_40121 DeepMRMD:1;iRNA_m5C:0.999576970387611 40122 chr11 598393 598393 1 + G C UCEC 598413 + 598393 598433 41 GTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG CTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTG < 41bp 1 0.11384407948472 1 0.312545567750931 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598413 chr11:598393 synonymous SNV . 0 1 hm5C_associated_SNPs_40924 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40122 DeepMRMD:1;iRNA_m5C:0.999536712157815 40123 chr17 78335565 78335565 1 + G A UCEC 78335559 + 78335539 78335579 41 CCCAAGAAGTTCGTGGACATCTTTCAGCAGACTCCTCTGGG CCCAAGAAGTTCGTGGACATCTTTCAACAGACTCCTCTGGG < 41bp 1 0.0312183614513241 1 0.0685569643974304 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78335559 chr17:78335565 synonymous SNV . 0 27 hm5C_associated_SNPs_40925 0 0 1 0 1 Nucleus 1 0.500231643921563 1 0.999536712156873 hm5C_site_40123 DeepMRMD:1;iRNA_m5C:0.999536712156873 40124 chr2 74326595 74326595 1 + G A UCEC 74326589 + 74326569 74326609 41 TCCCCCGCGAGGTCCGACGCCTGCCCGAGCCTGCCAAGTCC TCCCCCGCGAGGTCCGACGCCTGCCCAAGCCTGCCAAGTCC < 41bp 1 0.285078244465106 1 0.090480238199234 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74326589 chr2:74326595 nonsynonymous SNV 0.994 3 27 hm5C_associated_SNPs_40926 0 0 1 0 0 Cytosol 1 0.500231644230957 1 0.999536711538086 hm5C_site_40124 DeepMRMD:1;iRNA_m5C:0.999536711538086 40125 chr3 50311359 50311359 1 + C T UCEC 50311344 + 50311324 50311364 41 GCCCTGGTCTTCGCCTCCAGCAGCATCTTCCAGGGCTCTGC GCCCTGGTCTTCGCCTCCAGCAGCATCTTCCAGGGTTCTGC < 41bp 1 0.592196590736683 1 0.43670067191124 experiment 0.815606818526635 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50311344 chr3:50311359 . . 0 36 hm5C_associated_SNPs_40927 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_40125 DeepMRMD:1;iRNA_m5C:0.999536712157816 40126 chr17 75398198 75398198 1 + G A UCEC 75398205 + 75398185 75398225 41 TCCACCCCACCCCGGAGGGTCCAGACTCCCCTACTCCGAGC TCCACCCCACCCCAGAGGGTCCAGACTCCCCTACTCCGAGC < 41bp 1 0.31189833990089 1 0.157963871955872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEPT9 ENSG00000184640 CDS Human protein_coding chr17:75398205 chr17:75398198 nonsynonymous SNV 0.997 3 14 hm5C_associated_SNPs_40928 1 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40126 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hereditary Neuralgic Amyotrophy (HNA) Hereditary Neuralgic Amyotrophy (HNA) 40127 chr10 3176690 3176690 1 + C G UCEC 3176685 + 3176665 3176705 41 CCACCAACAGGGTGGGGCACCCTCTCCATTTGATAGAAACT CCACCAACAGGGTGGGGCACCCTCTGCATTTGATAGAAACT < 41bp 1 0.0159512478006787 1 0.0795022547245026 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFKP ENSG00000067057 CDS Human protein_coding chr10:3176685 chr10:3176690 nonsynonymous SNV 0.254 3 26 hm5C_associated_SNPs_40929 0 0 1 0 1 Nucleus 1 0.500231643921108 1 0.999536712157784 hm5C_site_40127 DeepMRMD:1;iRNA_m5C:0.999536712157784 40128 chr17 47115720 47115720 1 + C A UCEC 47115716 + 47115696 47115736 41 AAGCAGCAGCAAGTGGACATCCCCCTTCGGCTCCTGGTGCC AAGCAGCAGCAAGTGGACATCCCCATTCGGCTCCTGGTGCC < 41bp 1 0.673855791094853 1 0.406268835067749 experiment 0.652288417810295 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47115716 chr17:47115720 nonsynonymous SNV 0.942 2 25 hm5C_associated_SNPs_40931 0 0 1 0 1 Ribosome 1 0.500231643920997 1 0.999536712158006 hm5C_site_40128 DeepMRMD:1;iRNA_m5C:0.999536712158006 40129 chr17 47115720 47115720 1 + C A UCEC 47115718 + 47115698 47115738 41 GCAGCAGCAAGTGGACATCCCCCTTCGGCTCCTGGTGCCCA GCAGCAGCAAGTGGACATCCCCATTCGGCTCCTGGTGCCCA < 41bp 1 0.053551689908408 1 0.0480248630046844 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47115718 chr17:47115720 nonsynonymous SNV 0.942 2 23 hm5C_associated_SNPs_40932 0 0 1 0 1 Ribosome 1 0.500231643920782 1 0.999536712158436 hm5C_site_40129 DeepMRMD:1;iRNA_m5C:0.999536712158436 40130 chr12 132546836 132546836 1 + C T UCEC 132546853 + 132546833 132546873 41 CCCCGGCACGGTCTTTGGTGCCCCAAGTGTCCCAAGGTAAA CCCTGGCACGGTCTTTGGTGCCCCAAGTGTCCCAAGGTAAA < 41bp 1 0.124308090276092 1 0.138336807489395 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546853 chr12:132546836 nonsynonymous SNV 0.171 5 4 hm5C_associated_SNPs_40933 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40130 DeepMRMD:1;iRNA_m5C:0.999536712157815 40131 chr1 76255030 76255030 1 + A G UCEC 76255012 + 76254992 76255032 41 CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTAGT CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTGGT < 41bp 1 0.259685373036812 1 0.0464441478252411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255012 chr1:76255030 nonsynonymous SNV 0.991 4 39 hm5C_associated_SNPs_40935 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_40131 DeepMRMD:1;iRNA_m5C:0.999536712157816 40132 chr17 4799510 4799510 1 + G A UCEC 4799505 + 4799485 4799525 41 CAGTCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGA CAGTCCTTTGCCGACCTCCCCCACCACCCTCTGCTGGTCGA < 41bp 1 0.0767008920226729 1 0.142163008451462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799505 chr17:4799510 nonsynonymous SNV 0.999 4 26 hm5C_associated_SNPs_40936 0 0 1 0 1 Ribosome 1 0.500231643816173 1 0.999536712367653 hm5C_site_40132 DeepMRMD:1;iRNA_m5C:0.999536712367653 40133 chr17 4799510 4799510 1 + G A UCEC 4799508 + 4799488 4799528 41 TCCTTTGCCGACCTCCCCCACCGCCCTCTGCTGGTCGACCT TCCTTTGCCGACCTCCCCCACCACCCTCTGCTGGTCGACCT < 41bp 1 0.0931018111385845 1 0.218882948160172 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4799508 chr17:4799510 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_40937 0 0 1 0 1 Ribosome 1 0.500231644855058 1 0.999536710289884 hm5C_site_40133 DeepMRMD:1;iRNA_m5C:0.999536710289884 40134 chr6 64394367 64394367 1 + G A UCEC 64394368 + 64394348 64394388 41 ATCCGGGAGAAATAGATGTGCCATCTCATGAATTAAATTGT ATCCGGGAGAAATAGATGTACCATCTCATGAATTAAATTGT < 41bp 1 0.0176841412579966 1 0.075787752866745 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PHF3 ENSG00000118482 CDS Human protein_coding chr6:64394368 chr6:64394367 synonymous SNV . 0 20 hm5C_associated_SNPs_40938 0 0 1 0 0 Cytosol 1 0.50023158482086 1 0.999536830358279 hm5C_site_40134 DeepMRMD:1;iRNA_m5C:0.999536830358279 40135 chr1 249142477 249142477 1 + G A UCEC 249142474 + 249142454 249142494 41 CAAGCACCGGCGCACGCACACGGGCGAGAAGCCCTACCGCT CAAGCACCGGCGCACGCACACGGACGAGAAGCCCTACCGCT < 41bp 1 0.647511178908136 1 0.877076327800751 experiment 0.704977642183728 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ZNF672 ENSG00000171161 CDS Human protein_coding chr1:249142474 chr1:249142477 nonsynonymous SNV 0.865 1 24 hm5C_associated_SNPs_40939 0 0 0 0 0 Ribosome 1 0.500247028712384 0.245847344398498 0.999505942575232 hm5C_site_40135 DeepMRMD:0.245847344398498;iRNA_m5C:0.999505942575232 40136 chr20 39986973 39986973 1 + C A UCEC 39986960 + 39986940 39986980 41 GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCCTTTGGGA GTTTCTGCCCCACGGACAGCCCTTCTATGCTGCATTTGGGA < 41bp 1 0.0107287804019931 1 0.111655384302139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986960 chr20:39986973 synonymous SNV . 0 34 hm5C_associated_SNPs_40940 0 0 1 2 2 Nucleus 1 0.500231643921063 1 0.999536712157874 hm5C_site_40136 DeepMRMD:1;iRNA_m5C:0.999536712157874 40137 chr2 27663370 27663370 1 + G C UCEC 27663350 + 27663330 27663370 41 TGGCTGAAATCCCTGCAGGACCAGGAAGAGAACCAGTTCAG TGGCTGAAATCCCTGCAGGACCAGGAAGAGAACCAGTTCAC < 41bp 1 0.32506387047183 1 0.530017018318176 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27663350 chr2:27663370 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_40941 0 0 1 0 1 Cytosol 1 0.500231616613449 0.939965963363648 0.999536766773102 hm5C_site_40137 DeepMRMD:0.939965963363648;iRNA_m5C:0.999536766773102 40138 chr17 64685104 64685104 1 + A G UCEC 64685113 + 64685093 64685133 41 AGGTGAGTACTACAACGTACCCATTCCGGAAGGGGACGAGG AGGTGAGTACTGCAACGTACCCATTCCGGAAGGGGACGAGG < 41bp 1 0.0273591832049799 1 0.0530323684215546 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64685113 chr17:64685104 nonsynonymous SNV 0.993 4 12 hm5C_associated_SNPs_40942 0 0 1 0 2 Ribosome 1 0.500231643920651 1 0.999536712158697 hm5C_site_40138 DeepMRMD:1;iRNA_m5C:0.999536712158697 40139 chr4 57876573 57876573 1 + G A UCEC 57876563 + 57876543 57876583 41 CTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTCT CTTTTGCGTCTACTCTTTCTCACCTGCGTCATTTAAATTCT < 41bp 1 0.641953362140799 1 0.421427458524704 experiment 0.716093275718401 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57876563 chr4:57876573 nonsynonymous SNV 0.999 5 31 hm5C_associated_SNPs_40943 0 0 1 0 2 Nucleus 1 0.500231647142656 1 0.999536705714688 hm5C_site_40139 DeepMRMD:1;iRNA_m5C:0.999536705714688 40140 chr7 45662260 45662260 1 + C T UCEC 45662274 + 45662254 45662294 41 GTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG GTTTCATGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTG < 41bp 1 0.392534021827298 1 0.637467384338379 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45662274 chr7:45662260 nonsynonymous SNV 0.985 5 7 hm5C_associated_SNPs_40944 0 0 1 0 2 Nucleus 1 0.500231596469778 0.725065231323242 0.999536807060444 hm5C_site_40140 DeepMRMD:0.725065231323242;iRNA_m5C:0.999536807060444 40141 chr5 154244900 154244900 1 + C T UCEC 154244920 + 154244900 154244940 41 CTTCTGGAATCAATACTTGGCAGTTCAATTTCAAATTTAAC TTTCTGGAATCAATACTTGGCAGTTCAATTTCAAATTTAAC < 41bp 1 0.0518227332777401 1 0.0715358853340149 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154244920 chr5:154244900 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_40945 0 0 1 0 1 Ribosome 1 0.500231643921029 1 0.999536712157943 hm5C_site_40141 DeepMRMD:1;iRNA_m5C:0.999536712157943 40142 chr17 38290576 38290576 1 + T C UCEC 38290560 + 38290540 38290580 41 AGCTACCCTGGTTGGATGAGCGTAGCCGATGCAGATTGGAG AGCTACCCTGGTTGGATGAGCGTAGCCGATGCAGATCGGAG < 41bp 1 0.203137775788226 1 0.180713981389999 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MSL1 ENSG00000188895 CDS Human protein_coding chr17:38290560 chr17:38290576 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_40946 0 0 1 0 1 Cytosol 1 0.500231580200983 1 0.999536839598034 hm5C_site_40142 DeepMRMD:1;iRNA_m5C:0.999536839598034 40143 chr17 38290576 38290576 1 + T C UCEC 38290565 + 38290545 38290585 41 CCCTGGTTGGATGAGCGTAGCCGATGCAGATTGGAGATCCA CCCTGGTTGGATGAGCGTAGCCGATGCAGATCGGAGATCCA < 41bp 1 0.222555720496747 1 0.0895835757255554 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MSL1 ENSG00000188895 CDS Human protein_coding chr17:38290565 chr17:38290576 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_40947 0 0 1 0 1 Cytosol 1 0.500231643921289 1 0.999536712157423 hm5C_site_40143 DeepMRMD:1;iRNA_m5C:0.999536712157423 40144 chr11 65978624 65978624 1 + G A UCEC 65978630 + 65978610 65978650 41 TCATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGC TCATTTCCTTAAGCAAGATGCCAACAAGCTGCAGATCATGC < 41bp 1 0.0112065017071527 1 0.0732742547988892 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978630 chr11:65978624 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_40948 0 0 1 0 1 Cytosol 1 0.500231700639086 1 0.999536598721827 hm5C_site_40144 DeepMRMD:1;iRNA_m5C:0.999536598721827 40145 chr11 65978624 65978624 1 + G A UCEC 65978631 + 65978611 65978651 41 CATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGCT CATTTCCTTAAGCAAGATGCCAACAAGCTGCAGATCATGCT < 41bp 1 0.2529415588499 1 0.289121091365814 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978631 chr11:65978624 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_40949 0 0 1 0 1 Cytosol 1 0.500230088568064 1 0.999539822863871 hm5C_site_40145 DeepMRMD:1;iRNA_m5C:0.999539822863871 40146 chr11 65978624 65978624 1 + G A UCEC 65978638 + 65978618 65978658 41 TTAAGCGAGATGCCAACAAGCTGCAGATCATGCTGCAAAGG TTAAGCAAGATGCCAACAAGCTGCAGATCATGCTGCAAAGG < 41bp 1 0.638659743118731 1 0.277484893798828 experiment 0.722680513762538 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:65978638 chr11:65978624 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_40950 0 0 1 0 1 Cytosol 1 0.500231643950991 1 0.999536712098017 hm5C_site_40146 DeepMRMD:1;iRNA_m5C:0.999536712098017 40147 chr10 72434499 72434499 1 + G A UCEC 72434514 + 72434494 72434534 41 CCTCTGCACCCAGGAGGGACCCTGTGGCCTGGCAGGGTGGG CCTCTACACCCAGGAGGGACCCTGTGGCCTGGCAGGGTGGG < 41bp 1 0.118757273193895 1 0.125666886568069 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72434514 chr10:72434499 synonymous SNV . 0 6 hm5C_associated_SNPs_40951 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40147 DeepMRMD:1;iRNA_m5C:0.999536712157815 40148 chr19 50919746 50919746 1 + C T UCEC 50919728 + 50919708 50919748 41 AGCAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCC AGCAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGTCC < 41bp 1 0.390754141501583 1 0.292333483695984 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919728 chr19:50919746 nonsynonymous SNV 0.999 4 39 hm5C_associated_SNPs_40952 0 0 1 0 2 Nucleus 1 0.500231643921279 1 0.999536712157442 hm5C_site_40148 DeepMRMD:1;iRNA_m5C:0.999536712157442 40149 chr19 50919746 50919746 1 + C T UCEC 50919730 + 50919710 50919750 41 CAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCCAT CAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGTCCAT < 41bp 1 0.0724050712414814 1 0.0842882692813873 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919730 chr19:50919746 nonsynonymous SNV 0.999 4 37 hm5C_associated_SNPs_40953 0 0 1 0 2 Nucleus 1 0.500231643920851 1 0.999536712158299 hm5C_site_40149 DeepMRMD:1;iRNA_m5C:0.999536712158299 40150 chr19 50919746 50919746 1 + C T UCEC 50919731 + 50919711 50919751 41 AGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCCATC AGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGTCCATC < 41bp 1 0.339522493736435 1 0.0838181674480438 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919731 chr19:50919746 nonsynonymous SNV 0.999 4 36 hm5C_associated_SNPs_40954 0 0 1 0 2 Nucleus 1 0.500231641532624 1 0.999536716934753 hm5C_site_40150 DeepMRMD:1;iRNA_m5C:0.999536716934753 40151 chr13 53036622 53036622 1 + A C UCEC 53036640 + 53036620 53036660 41 CCATGGCAGAAGAAGATGAACAAAGATTATTTACTGAAAAA CCCTGGCAGAAGAAGATGAACAAAGATTATTTACTGAAAAA < 41bp 1 0.492137552741761 1 0.429655075073242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CKAP2 ENSG00000136108 CDS Human protein_coding chr13:53036640 chr13:53036622 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_40955 0 0 1 0 1 Cytosol 1 0.50023164392245 1 0.9995367121551 hm5C_site_40151 DeepMRMD:1;iRNA_m5C:0.9995367121551 40152 chr17 7479907 7479907 1 + C T UCEC 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGTACCAA < 41bp 1 0.625625062221003 1 0.0837382972240448 experiment 0.748749875557995 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479907 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_40957 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40152 DeepMRMD:1;iRNA_m5C:0.999536712157815 40153 chr17 7479907 7479907 1 + C T UCEC 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGTACCAACGT < 41bp 1 0.558302168267172 1 0.486173629760742 experiment 0.883395663465657 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479907 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_40958 0 0 1 0 1 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_40153 DeepMRMD:1;iRNA_m5C:0.999536712157818 40154 chr17 7479907 7479907 1 + C T UCEC 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATCGGGGGTACCAACGTGCGTGCTGAGGTGC < 41bp 1 0.121862389296438 1 0.169220685958862 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479907 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_40959 0 0 1 0 1 Cytosol 1 0.500231646254544 1 0.999536707490911 hm5C_site_40154 DeepMRMD:1;iRNA_m5C:0.999536707490911 40155 chr17 7479907 7479907 1 + C T UCEC 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATCGGGGGTACCAACGTGCGTGCTGAGGTGCA < 41bp 1 0.544650959688061 1 0.355463087558746 experiment 0.910698080623877 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479907 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_40960 0 0 1 0 1 Cytosol 1 0.500231643921087 1 0.999536712157827 hm5C_site_40155 DeepMRMD:1;iRNA_m5C:0.999536712157827 40156 chrX 47104880 47104880 1 + T C UCEC 47104877 + 47104857 47104897 41 AGACCCTGGAGAAGGAAAACCCCTGGTGAGGGGCCAGAGCG AGACCCTGGAGAAGGAAAACCCCCGGTGAGGGGCCAGAGCG < 41bp 1 0.516579225436385 1 0.367551743984222 experiment 0.96684154912723 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47104877 chrX:47104880 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_40961 0 0 1 0 1 cytosol 1 0.500231643924389 1 0.999536712151222 hm5C_site_40156 DeepMRMD:1;iRNA_m5C:0.999536712151222 40157 chr4 126238152 126238152 1 + G A UCEC 126238148 + 126238128 126238168 41 GACATCACCCTGAACCCGAGCGGCGAGGGAGCGTTCCTGCA GACATCACCCTGAACCCGAGCGGCAAGGGAGCGTTCCTGCA < 41bp 1 0.538885402289861 1 0.68866753578186 experiment 0.922229195420278 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126238148 chr4:126238152 nonsynonymous SNV 0.987 2 25 hm5C_associated_SNPs_40962 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921215 0.62266492843628 0.99953671215757 hm5C_site_40157 DeepMRMD:0.62266492843628;iRNA_m5C:0.99953671215757 40158 chr1 201163380 201163380 1 + G A UCEC 201163360 + 201163340 201163380 41 CCCTGAAGGCTGCAGCACGCCGGACTTTGAGCAGAAGCCCG CCCTGAAGGCTGCAGCACGCCGGACTTTGAGCAGAAGCCCA < 41bp 1 0.310401011815732 1 0.325862050056458 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201163360 chr1:201163380 nonsynonymous SNV 0.958 0 41 hm5C_associated_SNPs_40963 0 0 0 0 1 exosome 1 0.500231643920258 1 0.999536712159484 hm5C_site_40158 DeepMRMD:1;iRNA_m5C:0.999536712159484 40159 chr2 202141611 202141611 1 + A G UCEC 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAGTCA < 41bp 1 0.264841833405595 1 0.128590166568756 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141611 nonsynonymous SNV 0.748 4 38 hm5C_associated_SNPs_40964 0 0 1 0 1 Nucleus 1 0.500231782805749 1 0.999536434388502 hm5C_site_40159 DeepMRMD:1;iRNA_m5C:0.999536434388502 40160 chr15 69729046 69729046 1 + G A UCEC 69729054 + 69729034 69729074 41 ATGATGATTGATGAGTTTAACAAACAATGTAAGGGCAAAAC ATGATGATTGATAAGTTTAACAAACAATGTAAGGGCAAAAC < 41bp 1 0.163654574061368 1 0.297039926052094 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69729054 chr15:69729046 nonsynonymous SNV 0.333 1 13 hm5C_associated_SNPs_40965 0 0 1 0 1 Nucleus 1 0.500231719997931 1 0.999536560004139 hm5C_site_40160 DeepMRMD:1;iRNA_m5C:0.999536560004139 40161 chr11 61491044 61491044 1 + G T UCEC 61491024 + 61491004 61491044 41 ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCG ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCT < 41bp 1 0.0880304383490829 1 0.0913488566875458 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491024 chr11:61491044 nonsynonymous SNV 0.998 3 41 hm5C_associated_SNPs_40966 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643759892 1 0.999536712480215 hm5C_site_40161 DeepMRMD:1;iRNA_m5C:0.999536712480215 40162 chr12 123346288 123346288 1 + C T UCEC 123346273 + 123346253 123346293 41 CTTGACAAAAAGGATGGCATCTACCCAGCTCAACTCGTGAA CTTGACAAAAAGGATGGCATCTACCCAGCTCAACTTGTGAA < 41bp 1 0.158152155072023 1 0.0397652685642242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HIP1R ENSG00000130787 CDS Human protein_coding chr12:123346273 chr12:123346288 synonymous SNV . 0 36 hm5C_associated_SNPs_40967 0 0 0 0 1 Nucleus 1 0.500231655187176 1 0.999536689625648 hm5C_site_40162 DeepMRMD:1;iRNA_m5C:0.999536689625648 40163 chr14 64990104 64990104 1 + C T UCEC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGAGCGTCAGTTGCGACTGCACAATGATATGTACAAAGGC < 41bp 1 0.648806478332533 1 0.498590469360352 experiment 0.702387043334935 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990104 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_40968 0 0 1 0 1 Cytosol 1 0.500226849117871 1 0.999546301764259 hm5C_site_40163 DeepMRMD:1;iRNA_m5C:0.999546301764259 40164 chr11 61404248 61404248 1 + G A UCEC 61404259 + 61404239 61404279 41 GTGGGAGCAGACAATGTGAACTCCAAGCAGATGCAGCAGAT GTGGGAGCAAACAATGTGAACTCCAAGCAGATGCAGCAGAT < 41bp 1 0.696381352741396 1 0.807713985443115 experiment 0.607237294517209 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404259 chr11:61404248 . . 0 10 hm5C_associated_SNPs_40969 0 0 0 0 0 unknown 1 0.500231650156534 0.38457202911377 0.999536699686932 hm5C_site_40164 DeepMRMD:0.38457202911377;iRNA_m5C:0.999536699686932 40165 chr11 61404248 61404248 1 + G A UCEC 61404261 + 61404241 61404281 41 GGGAGCAGACAATGTGAACTCCAAGCAGATGCAGCAGATCC GGGAGCAAACAATGTGAACTCCAAGCAGATGCAGCAGATCC < 41bp 1 0.305472136150417 1 0.548883020877838 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404261 chr11:61404248 . . 0 8 hm5C_associated_SNPs_40970 0 0 0 0 0 unknown 1 0.50023163755641 0.902233958244324 0.999536724887181 hm5C_site_40165 DeepMRMD:0.902233958244324;iRNA_m5C:0.999536724887181 40166 chr19 52714672 52714672 1 + C T UCEC 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG TGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG < 41bp 1 0.441976855451623 1 0.0572250485420227 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714672 nonsynonymous SNV 0.992 4 1 hm5C_associated_SNPs_40971 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_40166 DeepMRMD:1;iRNA_m5C:0.999536712157815 40167 chr19 17615412 17615412 1 + C T UCEC 17615397 + 17615377 17615417 41 GAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTCGCCCT GAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTTGCCCT < 41bp 1 0.269466190214671 1 0.17797514796257 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17615397 chr19:17615412 synonymous SNV . 0 36 hm5C_associated_SNPs_40972 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643926992 1 0.999536712146016 hm5C_site_40167 DeepMRMD:1;iRNA_m5C:0.999536712146016 40168 chr9 88576932 88576932 1 + C T UCEC 88576946 + 88576926 88576966 41 AGATAACGTGGTTAGAAGGCCATTCACTGGCACAGACAGTA AGATAATGTGGTTAGAAGGCCATTCACTGGCACAGACAGTA < 41bp 1 0.0175860962049627 1 0.0999580323696136 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NAA35 ENSG00000135040 CDS Human protein_coding chr9:88576946 chr9:88576932 nonsynonymous SNV 0.995 4 7 hm5C_associated_SNPs_40973 0 0 1 0 1 Cytosol 1 0.500231643931756 1 0.999536712136487 hm5C_site_40168 DeepMRMD:1;iRNA_m5C:0.999536712136487 40169 chr9 88576932 88576932 1 + C T UCEC 88576950 + 88576930 88576970 41 AACGTGGTTAGAAGGCCATTCACTGGCACAGACAGTATTTA AATGTGGTTAGAAGGCCATTCACTGGCACAGACAGTATTTA < 41bp 1 0.264760879310564 1 0.172812670469284 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NAA35 ENSG00000135040 CDS Human protein_coding chr9:88576950 chr9:88576932 nonsynonymous SNV 0.995 4 3 hm5C_associated_SNPs_40974 0 0 1 0 1 Cytosol 1 0.500305313295678 1 0.999389373408645 hm5C_site_40169 DeepMRMD:1;iRNA_m5C:0.999389373408645 40170 chr5 122435547 122435547 1 + C T UCEC 122435560 + 122435540 122435580 41 ATCTGCGCGGCGCAGAGGATCCAGCAAGGCACCTGGATTGG ATCTGCGTGGCGCAGAGGATCCAGCAAGGCACCTGGATTGG < 41bp 1 0.324116131550487 1 0.0917368531227112 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM6 ENSG00000061455 CDS Human protein_coding chr5:122435560 chr5:122435547 nonsynonymous SNV 0.945 5 8 hm5C_associated_SNPs_40975 0 0 0 0 0 exosome 1 0.500231643917981 1 0.999536712164038 hm5C_site_40170 DeepMRMD:1;iRNA_m5C:0.999536712164038 40171 chr1 145115808 145115808 1 + G A UCEC 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAAGTACTTGAACATACATTCCACTTATGCCAAACTT < 41bp 1 0.047236645854804 1 0.0589816570281982 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115808 . . 0 20 hm5C_associated_SNPs_40977 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40171 DeepMRMD:1;iRNA_m5C:0.999536712157815 40172 chr5 139917040 139917040 1 + C A UCEC 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATACATCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC < 41bp 1 0.317971365811865 1 0.449128776788712 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917040 nonsynonymous SNV 0.996 4 6 hm5C_associated_SNPs_40978 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_40172 DeepMRMD:1;iRNA_m5C:0.999536712157815 40173 chr17 19284025 19284025 1 + G A UCEC 19284038 + 19284018 19284058 41 CTGCTGCGGGGCCTGAAGTACATGCACTCGGCTCAGGTCAT CTGCTGCAGGGCCTGAAGTACATGCACTCGGCTCAGGTCAT < 41bp 1 0.137343507953964 1 0.0699128210544586 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK7 ENSG00000166484 CDS Human protein_coding chr17:19284038 chr17:19284025 nonsynonymous SNV 0.998 4 8 hm5C_associated_SNPs_40979 0 0 0 0 0 exosome 1 0.500231643927413 1 0.999536712145175 hm5C_site_40173 DeepMRMD:1;iRNA_m5C:0.999536712145175 40174 chr9 37424938 37424938 1 + C T UCEC 37424932 + 37424912 37424952 41 GCCCACGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAA GCCCACGGCCTGCTCTGCCTCCTCTCTGACCACGTGGACAA < 41bp 1 0.235685464226441 1 0.0622031986713409 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424932 chr9:37424938 synonymous SNV . 0 27 hm5C_associated_SNPs_40980 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40174 DeepMRMD:1;iRNA_m5C:0.999536712157815 40175 chr9 37424938 37424938 1 + C T UCEC 37424937 + 37424917 37424957 41 CGGCCTGCTCTGCCTCCTCTCCGACCACGTGGACAAGAGGA CGGCCTGCTCTGCCTCCTCTCTGACCACGTGGACAAGAGGA < 41bp 1 0.377820845424434 1 0.525250196456909 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424937 chr9:37424938 synonymous SNV . 0 22 hm5C_associated_SNPs_40981 0 0 1 0 2 Ribosome 1 0.500231643728845 0.949499607086182 0.999536712542311 hm5C_site_40175 DeepMRMD:0.949499607086182;iRNA_m5C:0.999536712542311 40176 chr1 24022839 24022839 1 + T C UCEC 24022845 + 24022825 24022865 41 CTCTTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAAT CTCTTTCAGTATGACGGGATCATCCTTCCTGGCAAATAAAT < 41bp 1 0.078145341099461 1 0.0429891049861908 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022845 chr1:24022839 synonymous SNV . 0 15 hm5C_associated_SNPs_40983 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40176 DeepMRMD:1;iRNA_m5C:0.999536712157815 40177 chr1 24022839 24022839 1 + T C UCEC 24022848 + 24022828 24022868 41 TTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAATTCC TTTCAGTATGACGGGATCATCCTTCCTGGCAAATAAATTCC < 41bp 1 0.0413553957399804 1 0.0572342276573181 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022848 chr1:24022839 synonymous SNV . 0 12 hm5C_associated_SNPs_40984 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40177 DeepMRMD:1;iRNA_m5C:0.999536712157815 40178 chr5 1036434 1036434 1 + C T UCEC 1036447 + 1036427 1036467 41 GAGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGG GAGAACATGGAGCGCAGAAACCACTACCTGGACCTCGCCGG < 41bp 1 0.228592601458305 1 0.0819889008998871 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036447 chr5:1036434 nonsynonymous SNV 0.996 3 8 hm5C_associated_SNPs_40985 0 0 0 0 2 exosome 1 0.500231643921105 1 0.99953671215779 hm5C_site_40178 DeepMRMD:1;iRNA_m5C:0.99953671215779 40179 chr5 1036434 1036434 1 + C T UCEC 1036448 + 1036428 1036468 41 AGAACACGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG AGAACATGGAGCGCAGAAACCACTACCTGGACCTCGCCGGG < 41bp 1 0.554667336821721 1 0.151871383190155 experiment 0.890665326356558 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036448 chr5:1036434 nonsynonymous SNV 0.996 3 7 hm5C_associated_SNPs_40986 0 0 0 0 2 exosome 1 0.500231656140699 1 0.999536687718602 hm5C_site_40179 DeepMRMD:1;iRNA_m5C:0.999536687718602 40180 chr12 95868078 95868078 1 + G A UCEC 95868059 + 95868039 95868079 41 CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAAA < 41bp 1 0.350592447655141 1 0.492811590433121 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95868059 chr12:95868078 synonymous SNV . 0 40 hm5C_associated_SNPs_40987 0 0 1 0 1 Ribosome 1 0.50023164476686 1 0.999536710466281 hm5C_site_40180 DeepMRMD:1;iRNA_m5C:0.999536710466281 40181 chr8 41355115 41355115 1 + G A UCEC 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCAAAGGTTGT < 41bp 1 0.129376881140519 1 0.173482447862625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355115 nonsynonymous SNV 0.904 4 33 hm5C_associated_SNPs_40988 0 0 1 0 2 Ribosome 1 0.500231643943922 1 0.999536712112156 hm5C_site_40181 DeepMRMD:1;iRNA_m5C:0.999536712112156 40182 chr7 73927168 73927168 1 + G A UCEC 73927169 + 73927149 73927189 41 CCTTCCCACAGTGCTCAGCGCTGTCCAAACTGAACGCCGAG CCTTCCCACAGTGCTCAGCACTGTCCAAACTGAACGCCGAG < 41bp 1 0.101303229915148 1 0.350898563861847 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73927169 chr7:73927168 synonymous SNV . 0 20 hm5C_associated_SNPs_40989 0 0 1 0 1 Nucleus 1 0.500231459621182 1 0.999537080757635 hm5C_site_40182 DeepMRMD:1;iRNA_m5C:0.999537080757635 40183 chr5 151183536 151183536 1 + C T UCEC 151183550 + 151183530 151183570 41 CGCCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGG CGCCTTTGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGG < 41bp 1 0.317282131970345 1 0.417029947042465 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control G3BP1 ENSG00000145907 CDS Human protein_coding chr5:151183550 chr5:151183536 nonsynonymous SNV 0.996 2 7 hm5C_associated_SNPs_40990 0 0 1 0 1 Cytosol 1 0.50023159088462 1 0.99953681823076 hm5C_site_40183 DeepMRMD:1;iRNA_m5C:0.99953681823076 40184 chr2 216995665 216995665 1 + G A UCEC 216995648 + 216995628 216995668 41 TCTCTAAAGTGGATGAGGAACAAATGAAATATAAATCGGAG TCTCTAAAGTGGATGAGGAACAAATGAAATATAAATCAGAG < 41bp 1 0.366411535090591 1 0.505388557910919 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216995648 chr2:216995665 synonymous SNV . 0 38 hm5C_associated_SNPs_40991 0 0 1 0 1 Nucleus 1 0.500231643920894 0.989222884178162 0.999536712158211 hm5C_site_40184 DeepMRMD:0.989222884178162;iRNA_m5C:0.999536712158211 40185 chr12 122620050 122620050 1 + G A UCEC 122620047 + 122620027 122620067 41 TCACTGCAGGCTCCTGGGGTCCCGGAGTTCCACAGCAGCAT TCACTGCAGGCTCCTGGGGTCCCAGAGTTCCACAGCAGCAT < 41bp 1 0.167279270594764 1 0.116553455591202 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MLXIP ENSG00000175727 CDS Human protein_coding chr12:122620047 chr12:122620050 synonymous SNV . 0 24 hm5C_associated_SNPs_40992 0 0 1 0 1 chromatin 1 0.500231643888463 1 0.999536712223075 hm5C_site_40185 DeepMRMD:1;iRNA_m5C:0.999536712223075 40186 chr9 135919203 135919203 1 + C T UCEC 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC CTCCGGCCTGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC < 41bp 1 0.0486790464876451 1 0.0339957773685455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919203 synonymous SNV . 0 9 hm5C_associated_SNPs_40993 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40186 DeepMRMD:1;iRNA_m5C:0.999536712157815 40187 chr7 148876574 148876574 1 + G A UCEC 148876555 + 148876535 148876575 41 AGCACCTGCTGAACCACCGGCGGCTGCACACAGGCGAGCGG AGCACCTGCTGAACCACCGGCGGCTGCACACAGGCGAGCAG < 41bp 1 0.438632130924299 1 0.716839551925659 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148876555 chr7:148876574 nonsynonymous SNV 0.946 3 40 hm5C_associated_SNPs_40994 0 0 1 0 0 chromatin 1 0.500231643921092 0.566320896148682 0.999536712157815 hm5C_site_40187 DeepMRMD:0.566320896148682;iRNA_m5C:0.999536712157815 40188 chr12 58001384 58001384 1 + C T UCEC 58001367 + 58001347 58001387 41 AGTACGGCACCATTGTCATCCAGTACGTCTTCCCGCCCGGT AGTACGGCACCATTGTCATCCAGTACGTCTTCCCGCCTGGT < 41bp 1 0.4483699760341 1 0.27837473154068 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DTX3 ENSG00000178498 CDS Human protein_coding chr12:58001367 chr12:58001384 synonymous SNV . 0 38 hm5C_associated_SNPs_40996 0 0 1 0 0 exosome 1 0.500231643920951 1 0.999536712158098 hm5C_site_40188 DeepMRMD:1;iRNA_m5C:0.999536712158098 40189 chr19 50885853 50885853 1 + C T UCEC 50885864 + 50885844 50885884 41 GGACGTCCACGAGTGAGGGGCTGGCCACCCAGCCCCACAGC GGACGTCCATGAGTGAGGGGCTGGCCACCCAGCCCCACAGC < 41bp 1 0.481980877487155 1 0.700884103775024 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50885864 chr19:50885853 synonymous SNV . 0 10 hm5C_associated_SNPs_40997 0 0 0 0 0 Ribosome 1 0.50023164588632 0.598231792449952 0.999536708227361 hm5C_site_40189 DeepMRMD:0.598231792449952;iRNA_m5C:0.999536708227361 40190 chr19 50885853 50885853 1 + C T UCEC 50885873 + 50885853 50885893 41 CGAGTGAGGGGCTGGCCACCCAGCCCCACAGCCTTGCCTGA TGAGTGAGGGGCTGGCCACCCAGCCCCACAGCCTTGCCTGA < 41bp 1 0.545538549705896 1 0.894953608512878 experiment 0.908922900588208 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50885873 chr19:50885853 synonymous SNV . 0 1 hm5C_associated_SNPs_40998 0 0 0 0 0 Ribosome 1 0.500229889165039 0.210092782974244 0.999540221669923 hm5C_site_40190 DeepMRMD:0.210092782974244;iRNA_m5C:0.999540221669923 40191 chr1 201185648 201185648 1 + G A UCEC 201185656 + 201185636 201185676 41 GCGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGC GCGTCTGCCTCCACTGGCGGCCCCCAAGGGACAATGGGGGC < 41bp 1 0.022028795417025 1 0.219485372304916 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185656 chr1:201185648 nonsynonymous SNV 0.584 0 13 hm5C_associated_SNPs_41000 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40191 DeepMRMD:1;iRNA_m5C:0.999536712157815 40192 chr1 201185648 201185648 1 + G A UCEC 201185657 + 201185637 201185677 41 CGTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCC CGTCTGCCTCCACTGGCGGCCCCCAAGGGACAATGGGGGCC < 41bp 1 0.14891533490928 1 0.31002539396286 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185657 chr1:201185648 nonsynonymous SNV 0.584 0 12 hm5C_associated_SNPs_41001 0 0 0 0 1 exosome 1 0.500231643919229 1 0.999536712161541 hm5C_site_40192 DeepMRMD:1;iRNA_m5C:0.999536712161541 40193 chr1 201185648 201185648 1 + G A UCEC 201185658 + 201185638 201185678 41 GTCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCG GTCTGCCTCCACTGGCGGCCCCCAAGGGACAATGGGGGCCG < 41bp 1 0.275361604205717 1 0.502762615680695 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185658 chr1:201185648 nonsynonymous SNV 0.584 0 11 hm5C_associated_SNPs_41002 0 0 0 0 1 exosome 1 0.500231643921631 0.99447476863861 0.999536712156737 hm5C_site_40193 DeepMRMD:0.99447476863861;iRNA_m5C:0.999536712156737 40194 chr1 201185648 201185648 1 + G A UCEC 201185659 + 201185639 201185679 41 TCTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGG TCTGCCTCCACTGGCGGCCCCCAAGGGACAATGGGGGCCGG < 41bp 1 0.103179835212872 1 0.539940893650055 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185659 chr1:201185648 nonsynonymous SNV 0.584 0 10 hm5C_associated_SNPs_41003 0 0 0 0 1 exosome 1 0.500231643921092 0.92011821269989 0.999536712157815 hm5C_site_40194 DeepMRMD:0.92011821269989;iRNA_m5C:0.999536712157815 40195 chr1 201185648 201185648 1 + G A UCEC 201185660 + 201185640 201185680 41 CTGCCTCCGCTGGCGGCCCCCAAGGGACAATGGGGGCCGGA CTGCCTCCACTGGCGGCCCCCAAGGGACAATGGGGGCCGGA < 41bp 1 0.401770358086287 1 0.839398980140686 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201185660 chr1:201185648 nonsynonymous SNV 0.584 0 9 hm5C_associated_SNPs_41004 0 0 0 0 1 exosome 1 0.500231643921109 0.321202039718628 0.999536712157781 hm5C_site_40195 DeepMRMD:0.321202039718628;iRNA_m5C:0.999536712157781 40196 chr11 12549463 12549463 1 + C T UCEC 12549477 + 12549457 12549497 41 CCGTAACGTGGAGTGAGGGGCTGCCCTGGGCCCACCACTGC CCGTAATGTGGAGTGAGGGGCTGCCCTGGGCCCACCACTGC < 41bp 1 0.268148528809414 1 0.167675852775574 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARVA ENSG00000197702 CDS Human protein_coding chr11:12549477 chr11:12549463 synonymous SNV . 0 7 hm5C_associated_SNPs_41005 0 0 0 0 1 Ribosome 1 0.500231643917503 1 0.999536712164995 hm5C_site_40196 DeepMRMD:1;iRNA_m5C:0.999536712164995 40197 chr1 55524244 55524244 1 + G A UCEC 55524235 + 55524215 55524255 41 GCCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAG GCCTACACGGATGGCCACAGCCGTCGCCCACTGCGCCCCAG < 41bp 1 0.152363759325526 1 0.0812097489833832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524235 chr1:55524244 nonsynonymous SNV 0.001 0 30 hm5C_associated_SNPs_41006 0 0 1 0 2 Nucleus 1 0.500231637168862 1 0.999536725662277 hm5C_site_40197 DeepMRMD:1;iRNA_m5C:0.999536725662277 40198 chr1 55524244 55524244 1 + G A UCEC 55524236 + 55524216 55524256 41 CCTACACGGATGGCCACAGCCGTCGCCCGCTGCGCCCCAGA CCTACACGGATGGCCACAGCCGTCGCCCACTGCGCCCCAGA < 41bp 1 0.509750265532413 1 0.124994188547134 experiment 0.980499468935173 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524236 chr1:55524244 nonsynonymous SNV 0.001 0 29 hm5C_associated_SNPs_41007 0 0 1 0 2 Nucleus 1 0.50023153492437 1 0.999536930151259 hm5C_site_40198 DeepMRMD:1;iRNA_m5C:0.999536930151259 40199 chr19 1453498 1453498 1 + G A UCEC 1453489 + 1453469 1453509 41 TCCAGCCGCCCACCCTGGGCCCGGAGCCTGCCGCCCGGACC TCCAGCCGCCCACCCTGGGCCCGGAGCCTACCGCCCGGACC < 41bp 1 0.358728657546422 1 0.479278385639191 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453489 chr19:1453498 nonsynonymous SNV 0.010 1 30 hm5C_associated_SNPs_41008 0 0 0 0 1 nucleolus 1 0.500231644034178 1 0.999536711931645 hm5C_site_40199 DeepMRMD:1;iRNA_m5C:0.999536711931645 40200 chr3 178947156 178947156 1 + C T UCEC 178947150 + 178947130 178947170 41 ACTATTATGCAAATTCAGTGCAAAGGCGGCTTGAAAGGTGC ACTATTATGCAAATTCAGTGCAAAGGTGGCTTGAAAGGTGC < 41bp 1 0.51744910217852 1 0.257637083530426 experiment 0.96510179564296 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947150 chr3:178947156 synonymous SNV . 0 27 hm5C_associated_SNPs_41009 0 0 0 0 2 Ribosome 1 0.500231643928106 1 0.999536712143787 hm5C_site_40200 DeepMRMD:1;iRNA_m5C:0.999536712143787 40201 chr7 101891773 101891773 1 + G A UCEC 101891755 + 101891735 101891775 41 GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGC GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCAGC < 41bp 1 0.615844917325688 1 0.705721795558929 experiment 0.768310165348624 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891755 chr7:101891773 synonymous SNV . 0 39 hm5C_associated_SNPs_41010 0 0 1 0 1 Exosome 1 0.500231643921092 0.588556408882142 0.999536712157815 hm5C_site_40201 DeepMRMD:0.588556408882142;iRNA_m5C:0.999536712157815 40202 chr7 101891773 101891773 1 + G A UCEC 101891757 + 101891737 101891777 41 GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCC GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCAGCCC < 41bp 1 0.309233012061491 1 0.527885138988495 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891757 chr7:101891773 synonymous SNV . 0 37 hm5C_associated_SNPs_41011 0 0 1 0 1 Exosome 1 0.50023164548415 0.94422972202301 0.9995367090317 hm5C_site_40202 DeepMRMD:0.94422972202301;iRNA_m5C:0.9995367090317 40203 chr7 101891773 101891773 1 + G A UCEC 101891758 + 101891738 101891778 41 AGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCCG AGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCAGCCCG < 41bp 1 0.655865224866298 1 0.809045970439911 experiment 0.688269550267405 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891758 chr7:101891773 synonymous SNV . 0 36 hm5C_associated_SNPs_41012 0 0 1 0 1 Exosome 1 0.500231621260313 0.381908059120178 0.999536757479374 hm5C_site_40203 DeepMRMD:0.381908059120178;iRNA_m5C:0.999536757479374 40204 chr15 69718689 69718689 1 + C T UCEC 69718677 + 69718657 69718697 41 ATTTCTCTGTTGTCCTAGGCCAGAAAAAGAGACGTATTGCT ATTTCTCTGTTGTCCTAGGCCAGAAAAAGAGATGTATTGCT < 41bp 1 0.541645161414894 1 0.531281352043152 experiment 0.916709677170211 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69718677 chr15:69718689 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_41013 0 0 1 0 1 Nucleus 1 0.500231644236682 0.937437295913696 0.999536711526636 hm5C_site_40204 DeepMRMD:0.937437295913696;iRNA_m5C:0.999536711526636 40205 chr1 9416592 9416592 1 + T C UCEC 9416605 + 9416585 9416625 41 TAGTGAGTGCCGTCTGGGGCCACTGTGAGATCCGAATGCGC TAGTGAGCGCCGTCTGGGGCCACTGTGAGATCCGAATGCGC < 41bp 1 0.209787020942638 1 0.1288723051548 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPSB1 ENSG00000171621 CDS Human protein_coding chr1:9416605 chr1:9416592 synonymous SNV . 0 8 hm5C_associated_SNPs_41015 0 0 0 0 1 nucleus 1 0.500231643320517 1 0.999536713358967 hm5C_site_40205 DeepMRMD:1;iRNA_m5C:0.999536713358967 40206 chr10 94392246 94392246 1 + C T UCEC 94392243 + 94392223 94392263 41 ACTTATTTTTAAAAATATAGCTGCTTAACACAGTTGAAGAA ACTTATTTTTAAAAATATAGCTGTTTAACACAGTTGAAGAA < 41bp 1 0.128783863189232 1 0.0622071325778961 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF11 ENSG00000138160 CDS Human protein_coding chr10:94392243 chr10:94392246 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_41016 0 0 1 0 1 Cytosol 1 0.500231644690445 1 0.99953671061911 hm5C_site_40206 DeepMRMD:1;iRNA_m5C:0.99953671061911 40207 chr10 70962697 70962697 1 + A G UCEC 70962706 + 70962686 70962726 41 AAATTTTCTGCAGAGTTGATCCAGCATATTCCACTAAGTCT AAATTTTCTGCGGAGTTGATCCAGCATATTCCACTAAGTCT < 41bp 1 0.175906918191586 1 0.830444276332855 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70962706 chr10:70962697 synonymous SNV . 0 12 hm5C_associated_SNPs_41017 0 0 1 0 1 Cytosol 1 0.499439708900447 0.33911144733429 1 hm5C_site_40207 DeepMRMD:0.33911144733429;iRNA_m5C:1 40208 chr3 191074905 191074905 1 + C T UCEC 191074906 + 191074886 191074926 41 ATTTTGCTGTCCTGGAGGACCACACCCTGGCTCACAGCCTG ATTTTGCTGTCCTGGAGGATCACACCCTGGCTCACAGCCTG < 41bp 1 0.521334976834512 1 0.208775401115417 experiment 0.957330046330977 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191074906 chr3:191074905 synonymous SNV . 0 20 hm5C_associated_SNPs_41018 0 0 1 0 1 Ribosome 1 0.500231643913381 1 0.999536712173239 hm5C_site_40208 DeepMRMD:1;iRNA_m5C:0.999536712173239 40209 chr10 128768998 128768998 1 + G A UCEC 128768993 + 128768973 128769013 41 TAACTATGATGCCAGAGGAGCGGATGAACTTTCTTTACAGA TAACTATGATGCCAGAGGAGCGGATAAACTTTCTTTACAGA < 41bp 1 0.059291204150939 1 0.391879379749298 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128768993 chr10:128768998 nonsynonymous SNV 0.990 1 26 hm5C_associated_SNPs_41019 0 0 1 0 2 Nucleus 1 0.500231643921098 1 0.999536712157803 hm5C_site_40209 DeepMRMD:1;iRNA_m5C:0.999536712157803 40210 chr6 37141801 37141801 1 + T A UCEC 37141808 + 37141788 37141828 41 CATGGATGCAAGATGTTCTCCTGCCCCAGGAAACTGCTGAG CATGGATGCAAGAAGTTCTCCTGCCCCAGGAAACTGCTGAG < 41bp 1 0.301668261190158 1 0.175362348556519 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PIM1 ENSG00000137193 CDS Human protein_coding chr6:37141808 chr6:37141801 nonsynonymous SNV 0.995 0 14 hm5C_associated_SNPs_41020 0 0 1 0 1 Cytosol 1 0.500231643909144 1 0.999536712181712 hm5C_site_40210 DeepMRMD:1;iRNA_m5C:0.999536712181712 40211 chr6 127607951 127607951 1 + T A UCEC 127607952 + 127607932 127607972 41 TCTATGTGTAAAAGGAGCTTCATGGCTTGGAAAGCGGTGTG TCTATGTGTAAAAGGAGCTACATGGCTTGGAAAGCGGTGTG < 41bp 1 0.530356758055503 1 0.444372206926346 experiment 0.939286483888994 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF146 ENSG00000118518 CDS Human protein_coding chr6:127607952 chr6:127607951 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_41021 0 0 0 0 0 cytosol 1 0.500231643920825 1 0.999536712158351 hm5C_site_40211 DeepMRMD:1;iRNA_m5C:0.999536712158351 40212 chr14 93277897 93277897 1 + G A UCEC 93277898 + 93277878 93277918 41 TATAAAAATTTGTCACAGAGCGAGTTTGCTGCACGCCTTAA TATAAAAATTTGTCACAGAACGAGTTTGCTGCACGCCTTAA < 41bp 1 0.582997533096548 1 0.204662472009659 experiment 0.834004933806904 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93277898 chr14:93277897 nonsynonymous SNV 0.996 0 20 hm5C_associated_SNPs_41022 0 0 0 0 1 chromatin 1 0.500231643491742 1 0.999536713016516 hm5C_site_40212 DeepMRMD:1;iRNA_m5C:0.999536713016516 40213 chr3 126751399 126751399 1 + C T UCEC 126751389 + 126751369 126751409 41 CTGGGCAAGGACTCACCCTCCAACAAGCTGCTCTACGCCAA CTGGGCAAGGACTCACCCTCCAACAAGCTGTTCTACGCCAA < 41bp 1 0.414832974137046 1 0.639071822166443 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751389 chr3:126751399 nonsynonymous SNV 0.991 4 31 hm5C_associated_SNPs_41023 0 0 1 0 1 Ribosome 1 0.500231643921092 0.721856355667114 0.999536712157815 hm5C_site_40213 DeepMRMD:0.721856355667114;iRNA_m5C:0.999536712157815 40214 chr17 27027980 27027980 1 + C T UCEC 27027991 + 27027971 27028011 41 CCAGCCCAGCAGCCAGTGGCCACACCACTAATGACCCCTAG CCAGCCCAGTAGCCAGTGGCCACACCACTAATGACCCCTAG < 41bp 1 0.2311479955148 1 0.314044624567032 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27027991 chr17:27027980 stopgain 1.000 1 10 hm5C_associated_SNPs_41024 0 0 1 0 1 Cytosol 1 0.500231643921079 1 0.999536712157841 hm5C_site_40214 DeepMRMD:1;iRNA_m5C:0.999536712157841 40215 chr13 76382253 76382253 1 + T C UCEC 76382234 + 76382214 76382254 41 GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCTG GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCCG < 41bp 1 0.266409299644234 1 0.776997566223145 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76382234 chr13:76382253 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_41025 0 0 1 0 1 Cytosol 1 0.500231643921092 0.44600486755371 0.999536712157815 hm5C_site_40215 DeepMRMD:0.44600486755371;iRNA_m5C:0.999536712157815 40216 chr22 32498091 32498091 1 + G A UCEC 32498104 + 32498084 32498124 41 GGGAGCTGCATGGAGCCCAGCAACTGTCCCACGATTATCTG GGGAGCTACATGGAGCCCAGCAACTGTCCCACGATTATCTG < 41bp 1 0.283528334678833 1 0.246879488229752 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32498104 chr22:32498091 nonsynonymous SNV 0.994 4 8 hm5C_associated_SNPs_41027 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40216 DeepMRMD:1;iRNA_m5C:0.999536712157815 40217 chr20 30386283 30386283 1 + G A UCEC 30386297 + 30386277 30386317 41 AGCCCAGCAGTTGGAGGAGGCCAGACTACAGGAGGAAGAGC AGCCCAACAGTTGGAGGAGGCCAGACTACAGGAGGAAGAGC < 41bp 1 0.534590054011699 1 0.244136601686478 experiment 0.930819891976602 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TPX2 ENSG00000088325 CDS Human protein_coding chr20:30386297 chr20:30386283 synonymous SNV . 0 7 hm5C_associated_SNPs_41028 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40217 DeepMRMD:1;iRNA_m5C:0.999536712157815 40218 chr14 97018849 97018849 1 + C T UCEC 97018858 + 97018838 97018878 41 TTGACAGCTCTCAATGACAGCAGCCTCGACTTGTCTATGGA TTGACAGCTCTTAATGACAGCAGCCTCGACTTGTCTATGGA < 41bp 1 0.216557825917313 1 0.205750554800034 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97018858 chr14:97018849 synonymous SNV . 0 12 hm5C_associated_SNPs_41029 0 0 1 0 1 Ribosome 1 0.500231686683619 1 0.999536626632761 hm5C_site_40218 DeepMRMD:1;iRNA_m5C:0.999536626632761 40219 chr17 79409194 79409194 1 + C T UCEC 79409200 + 79409180 79409220 41 CCCCGAGGGGCCTGCGAGGGCCGCCCCAAGCACCTCACCTC CCCCGAGGGGCCTGTGAGGGCCGCCCCAAGCACCTCACCTC < 41bp 1 0.137585793620301 1 0.413517236709595 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79409200 chr17:79409194 synonymous SNV . 0 15 hm5C_associated_SNPs_41030 0 0 0 0 0 chromatin 1 0.500231643943364 1 0.999536712113272 hm5C_site_40219 DeepMRMD:1;iRNA_m5C:0.999536712113272 40220 chr17 79409194 79409194 1 + C T UCEC 79409201 + 79409181 79409221 41 CCCGAGGGGCCTGCGAGGGCCGCCCCAAGCACCTCACCTCC CCCGAGGGGCCTGTGAGGGCCGCCCCAAGCACCTCACCTCC < 41bp 1 0.195537596777387 1 0.500433206558228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79409201 chr17:79409194 synonymous SNV . 0 14 hm5C_associated_SNPs_41031 0 0 0 0 0 chromatin 1 0.500231643921092 0.999133586883544 0.999536712157815 hm5C_site_40220 DeepMRMD:0.999133586883544;iRNA_m5C:0.999536712157815 40221 chr17 79409194 79409194 1 + C T UCEC 79409203 + 79409183 79409223 41 CGAGGGGCCTGCGAGGGCCGCCCCAAGCACCTCACCTCCTG CGAGGGGCCTGTGAGGGCCGCCCCAAGCACCTCACCTCCTG < 41bp 1 0.345284684001775 1 0.357529252767563 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79409203 chr17:79409194 synonymous SNV . 0 12 hm5C_associated_SNPs_41032 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40221 DeepMRMD:1;iRNA_m5C:0.999536712157815 40222 chr17 79409194 79409194 1 + C T UCEC 79409204 + 79409184 79409224 41 GAGGGGCCTGCGAGGGCCGCCCCAAGCACCTCACCTCCTGC GAGGGGCCTGTGAGGGCCGCCCCAAGCACCTCACCTCCTGC < 41bp 1 0.244974963730908 1 0.627027630805969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79409204 chr17:79409194 synonymous SNV . 0 11 hm5C_associated_SNPs_41033 0 0 0 0 0 chromatin 1 0.500231643921093 0.745944738388062 0.999536712157815 hm5C_site_40222 DeepMRMD:0.745944738388062;iRNA_m5C:0.999536712157815 40223 chr8 145727035 145727035 1 + A C UCEC 145727024 + 145727004 145727044 41 GCTGAGCCCCCTGGACAGCACCACCCCCCACACCCTGGTCC GCTGAGCCCCCTGGACAGCACCACCCCCCACCCCCTGGTCC < 41bp 1 0.125957181746568 1 0.0423557460308075 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145727024 chr8:145727035 nonsynonymous SNV 0.000 0 32 hm5C_associated_SNPs_41034 0 0 1 0 0 Ribosome 1 0.50023164414632 1 0.99953671170736 hm5C_site_40223 DeepMRMD:1;iRNA_m5C:0.99953671170736 40224 chr7 100204250 100204250 1 + C G UCEC 100204239 + 100204219 100204259 41 TCCGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT TCCGGAGAAAACAGAGGAATCTCCTTCAGCCGCTGGTGAGT < 41bp 1 0.374959499474455 1 0.175954431295395 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204239 chr7:100204250 nonsynonymous SNV 0.003 1 32 hm5C_associated_SNPs_41035 0 0 1 0 1 Endoplasmic reticulum 1 0.500231669360229 1 0.999536661279542 hm5C_site_40224 DeepMRMD:1;iRNA_m5C:0.999536661279542 40225 chr3 37583987 37583987 1 + C T UCEC 37583980 + 37583960 37584000 41 GGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGAGAGAC GGCCAGATGCCCAGGGTCTACTTTGTGTTGCTGGGAGAGAC < 41bp 1 0.272707243435663 1 0.10257014632225 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37583980 chr3:37583987 synonymous SNV . 0 28 hm5C_associated_SNPs_41036 0 0 0 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_40225 DeepMRMD:1;iRNA_m5C:0.999536712157814 40226 chr1 32626302 32626302 1 + A G UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTGACGTGA < 41bp 1 0.176402896318392 1 0.460446953773499 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626302 synonymous SNV . 0 35 hm5C_associated_SNPs_41037 0 0 1 0 3 Cytosol 1 0.500231626662659 1 0.999536746674683 hm5C_site_40226 DeepMRMD:1;iRNA_m5C:0.999536746674683 40227 chr5 140516535 140516535 1 + G A UCEC 140516546 + 140516526 140516566 41 TCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTC TCCATCAACACGGACAACGGCCACCTGTTTGCCCTCAGGTC < 41bp 1 0.11243841450716 1 0.0516127645969391 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140516546 chr5:140516535 nonsynonymous SNV 0.335 0 10 hm5C_associated_SNPs_41038 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40227 DeepMRMD:1;iRNA_m5C:0.999536712157815 40228 chr11 86663311 86663311 1 + C A UCEC 86663294 - 86663274 86663314 41 CCAGGTGATGAAGAGGTGCCCTTACCTCACAAAACCCCCAT CCATGTGATGAAGAGGTGCCCTTACCTCACAAAACCCCCAT < 41bp 1 0.17526311624951 1 0.0546196103096008 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZD4 ENSG00000174804 CDS Human protein_coding chr11:86663294 chr11:86663311 nonsynonymous SNV 1.000 5 4 hm5C_associated_SNPs_41039 0 0 1 0 0 Ribosome 1 0.500231834106199 1 0.999536331787602 hm5C_site_40228 DeepMRMD:1;iRNA_m5C:0.999536331787602 40229 chr11 86663311 86663311 1 + C A UCEC 86663313 - 86663293 86663333 41 CCACATGTGCATGGAAGGGCCAGGTGATGAAGAGGTGCCCT CCACATGTGCATGGAAGGGCCATGTGATGAAGAGGTGCCCT < 41bp 1 0.3832432360387 1 0.296073138713837 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FZD4 ENSG00000174804 CDS Human protein_coding chr11:86663313 chr11:86663311 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_41040 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40229 DeepMRMD:1;iRNA_m5C:0.999536712157815 40230 chr1 36645658 36645658 1 + G A UCEC 36645659 + 36645639 36645679 41 AAGCTGTGGTGCAGTCCCCGCAGGTCACAGGTAGATCTCCT AAGCTGTGGTGCAGTCCCCACAGGTCACAGGTAGATCTCCT < 41bp 1 0.396025377460257 1 0.918918251991272 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36645659 chr1:36645658 synonymous SNV . 0 20 hm5C_associated_SNPs_41041 0 0 1 0 1 Ribosome 1 0.500231643871329 0.162163496017456 0.999536712257342 hm5C_site_40230 DeepMRMD:0.162163496017456;iRNA_m5C:0.999536712257342 40231 chr11 67818112 67818112 1 + C T UCEC 67818104 + 67818084 67818124 41 GGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGC GGTGATGGAGGGACTCTCAGCCTTCCTGTACGCCCTGCGGC < 41bp 1 0.0377455802313071 1 0.271637856960297 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818104 chr11:67818112 nonsynonymous SNV 0.994 5 29 hm5C_associated_SNPs_41042 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40231 DeepMRMD:1;iRNA_m5C:0.999536712157815 40232 chr11 67818112 67818112 1 + C T UCEC 67818105 + 67818085 67818125 41 GTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCT GTGATGGAGGGACTCTCAGCCTTCCTGTACGCCCTGCGGCT < 41bp 1 0.132741351942865 1 0.450376033782959 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818105 chr11:67818112 nonsynonymous SNV 0.994 5 28 hm5C_associated_SNPs_41043 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40232 DeepMRMD:1;iRNA_m5C:0.999536712157815 40233 chr17 78321158 78321158 1 + G A UCEC 78321138 + 78321118 78321158 41 GCTTTGGACATCTTTCTGGCCAATTTGCCCGAGGCCAAGTG GCTTTGGACATCTTTCTGGCCAATTTGCCCGAGGCCAAGTA < 41bp 1 0.0358244259303817 1 0.0344139337539673 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78321138 chr17:78321158 nonsynonymous SNV 0.003 0 41 hm5C_associated_SNPs_41044 0 0 1 0 0 Nucleus 1 0.500236047785344 1 0.999527904429313 hm5C_site_40233 DeepMRMD:1;iRNA_m5C:0.999527904429313 40234 chr2 239038788 239038788 1 + G A UCEC 239038799 + 239038779 239038819 41 GGAGCTCAGGCCCCACGGAGCAGGCGGCCTGGAGGTACTCA GGAGCTCAGACCCCACGGAGCAGGCGGCCTGGAGGTACTCA < 41bp 1 0.498147403784919 1 0.881080329418182 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ESPNL ENSG00000144488 CDS Human protein_coding chr2:239038799 chr2:239038788 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_41045 0 0 0 0 1 exosome 1 0.500231643921092 0.237839341163636 0.999536712157815 hm5C_site_40234 DeepMRMD:0.237839341163636;iRNA_m5C:0.999536712157815 40235 chr20 49458397 49458397 1 + G A UCEC 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCAGAG < 41bp 1 0.294565245555403 1 0.0512876510620117 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458397 nonsynonymous SNV 0.444 0 38 hm5C_associated_SNPs_41046 0 0 1 0 2 exosome 1 0.500231643921077 1 0.999536712157846 hm5C_site_40235 DeepMRMD:1;iRNA_m5C:0.999536712157846 40236 chr4 103522093 103522093 1 + T C UCEC 103522101 + 103522081 103522121 41 ATTCTCAACTTGTGAGGGATCTACTAGAAGTCACATCTGGT ATTCTCAACTTGCGAGGGATCTACTAGAAGTCACATCTGGT < 41bp 1 0.158285475359354 1 0.453214138746262 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103522101 chr4:103522093 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_41047 0 0 1 0 1 Ribosome 1 0.500231643919544 1 0.999536712160913 hm5C_site_40236 DeepMRMD:1;iRNA_m5C:0.999536712160913 40237 chr9 131247115 131247115 1 + G A UCEC 131247109 + 131247089 131247129 41 CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAG CCATCCGAGCCCAGAAGGAGCGAGCCAAGAAGAGCGAGGAG < 41bp 1 0.434720959549174 1 0.504312098026276 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247109 chr9:131247115 nonsynonymous SNV 0.998 3 27 hm5C_associated_SNPs_41048 0 0 1 0 1 Cytosol 1 0.500231643921092 0.991375803947448 0.999536712157815 hm5C_site_40237 DeepMRMD:0.991375803947448;iRNA_m5C:0.999536712157815 40238 chr19 30164870 30164870 1 + C T UCEC 30164884 + 30164864 30164904 41 GGCGTGCTGACCAAAGAGTGCCGCAAGAAGGCCAAGCCGCG GGCGTGTTGACCAAAGAGTGCCGCAAGAAGGCCAAGCCGCG < 41bp 1 0.282305066561735 1 0.0829402208328247 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLEKHF1 ENSG00000166289 CDS Human protein_coding chr19:30164884 chr19:30164870 synonymous SNV . 0 7 hm5C_associated_SNPs_41049 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40238 DeepMRMD:1;iRNA_m5C:0.999536712157815 40239 chr14 65210235 65210235 1 + G A UCEC 65210215 + 65210195 65210235 41 TTGTCATGGAGAAGGGACCCCTTCCCAGCCCCACTGCAGGG TTGTCATGGAGAAGGGACCCCTTCCCAGCCCCACTGCAGGA < 41bp 1 0.103089465177394 1 0.0414611101150513 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65210215 chr14:65210235 synonymous SNV . 0 41 hm5C_associated_SNPs_41050 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40239 DeepMRMD:1;iRNA_m5C:0.999536712157815 40240 chr7 35943879 35943879 1 + C T UCEC 35943897 + 35943877 35943917 41 AACAAGAAGAAAGGGAAGATCTTTTAAACTCTCTATTGACC AATAAGAAGAAAGGGAAGATCTTTTAAACTCTCTATTGACC < 41bp 1 0.0632579530425052 1 0.09201979637146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35943897 chr7:35943879 synonymous SNV . 0 3 hm5C_associated_SNPs_41051 0 0 1 0 1 chromatin 1 0.500231606409928 1 0.999536787180144 hm5C_site_40240 DeepMRMD:1;iRNA_m5C:0.999536787180144 40241 chr3 20019895 20019895 1 + G T UCEC 20019890 + 20019870 20019910 41 TGTAAATGAAATATTCATGGCAATAGGTAAGATTAATATCT TGTAAATGAAATATTCATGGCAATATGTAAGATTAATATCT < 41bp 1 0.19202739461668 1 0.161749422550201 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RAB5A ENSG00000144566 CDS Human protein_coding chr3:20019890 chr3:20019895 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_41052 0 0 0 4 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40241 DeepMRMD:1;iRNA_m5C:0.999536712157815 40242 chr1 24018319 24018319 1 + G A UCEC 24018301 + 24018281 24018321 41 CGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCGGT CGGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCAGT < 41bp 1 0.292134094221214 1 0.245328694581985 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24018301 chr1:24018319 synonymous SNV . 0 39 hm5C_associated_SNPs_41053 0 0 1 0 1 Cytosol 1 0.500231643936945 1 0.999536712126109 hm5C_site_40242 DeepMRMD:1;iRNA_m5C:0.999536712126109 40243 chr1 24018319 24018319 1 + G A UCEC 24018302 + 24018282 24018322 41 GGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCGGTG GGAAGCTCCGCTTTCTCTTCCTGCTCTCCATCATGGCAGTG < 41bp 1 0.44433471684596 1 0.0862075388431549 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24018302 chr1:24018319 synonymous SNV . 0 38 hm5C_associated_SNPs_41054 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_40243 DeepMRMD:1;iRNA_m5C:0.999536712157815 40244 chr11 65273147 65273147 1 + C A UCEC 65273153 + 65273133 65273173 41 GGTAACGATGGTGTCGAGGTCTTTGGTGGGTTGAACTATGT GGTAACGATGGTGTAGAGGTCTTTGGTGGGTTGAACTATGT < 41bp 1 0.479328487976688 1 0.172385007143021 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65273153 chr11:65273147 . . 0 15 hm5C_associated_SNPs_41055 0 0 1 0 0 unknown 1 0.500274490024846 1 0.999451019950307 hm5C_site_40244 DeepMRMD:1;iRNA_m5C:0.999451019950307 40245 chr9 133760723 133760723 1 + C T UCEC 133760722 + 133760702 133760742 41 CGAGTGTCTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGAT CGAGTGTCTCTTCGGAAAACCTGCCAGCCTCCAGAGCGGAT < 41bp 1 0.159085689170215 1 0.130102872848511 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760722 chr9:133760723 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_41056 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644441115 1 0.999536711117771 hm5C_site_40245 DeepMRMD:1;iRNA_m5C:0.999536711117771 40246 chr9 133760723 133760723 1 + C T UCEC 133760729 + 133760709 133760749 41 CTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGATCGCCAGC CTCTTCGGAAAACCTGCCAGCCTCCAGAGCGGATCGCCAGC < 41bp 1 0.0125618375904117 1 0.124967217445374 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760729 chr9:133760723 nonsynonymous SNV 0.990 4 15 hm5C_associated_SNPs_41057 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40246 DeepMRMD:1;iRNA_m5C:0.999536712157815 40247 chr6 33652660 33652660 1 + C T UCEC 33652675 + 33652655 33652695 41 AAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCACCTGCT AAGATTTTCCAGGAGAGCATCGGCCTGGCCATCCACCTGCT < 41bp 1 0.226500244442919 1 0.331081449985504 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33652675 chr6:33652660 synonymous SNV . 0 6 hm5C_associated_SNPs_41058 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921087 1 0.999536712157826 hm5C_site_40247 DeepMRMD:1;iRNA_m5C:0.999536712157826 40248 chr13 98654815 98654815 1 + A C UCEC 98654834 + 98654814 98654854 41 TAAATTTTGTTTTACTTTTTCTCCAGGATCCTGTAAGTACC TCAATTTTGTTTTACTTTTTCTCCAGGATCCTGTAAGTACC < 41bp 1 0.637039837715714 1 0.916033506393433 experiment 0.725920324568571 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IPO5 ENSG00000065150 CDS Human protein_coding chr13:98654834 chr13:98654815 synonymous SNV . 0 2 hm5C_associated_SNPs_41059 0 0 1 0 2 Ribosome 1 0.50023164389376 0.167932987213134 0.999536712212481 hm5C_site_40248 DeepMRMD:0.167932987213134;iRNA_m5C:0.999536712212481 40249 chr4 37857244 37857244 1 + A G UCEC 37857261 + 37857241 37857281 41 AGTAAAAGCAGCCAAATGATCACCTTCACCTTTGCTAATGG AGTGAAAGCAGCCAAATGATCACCTTCACCTTTGCTAATGG < 41bp 1 0.682069857462538 1 0.158241450786591 experiment 0.635860285074923 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PGM2 ENSG00000169299 CDS Human protein_coding chr4:37857261 chr4:37857244 nonsynonymous SNV 0.998 1 4 hm5C_associated_SNPs_41060 0 0 0 0 1 Nucleus 1 0.500231644063673 1 0.999536711872653 hm5C_site_40249 DeepMRMD:1;iRNA_m5C:0.999536711872653 40250 chr9 35733129 35733129 1 + C T UCEC 35733112 + 35733092 35733132 41 CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTTTAT < 41bp 1 0.111482682458674 1 0.0815618336200714 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733112 chr9:35733129 nonsynonymous SNV 0.028 1 38 hm5C_associated_SNPs_41061 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157817 hm5C_site_40250 DeepMRMD:1;iRNA_m5C:0.999536712157817 40251 chr9 35733129 35733129 1 + C T UCEC 35733113 + 35733093 35733133 41 ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTTTATG < 41bp 1 0.12715172408499 1 0.206052452325821 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733113 chr9:35733129 nonsynonymous SNV 0.028 1 37 hm5C_associated_SNPs_41062 0 0 1 0 1 Endoplasmic reticulum 1 0.5002316413545 1 0.999536717290999 hm5C_site_40251 DeepMRMD:1;iRNA_m5C:0.999536717290999 40252 chr9 19336755 19336755 1 + G A UCEC 19336770 + 19336750 19336790 41 ATGATGCTAACAATGGGGAGCACACAGTCTTCGTCAGAGAT ATGATACTAACAATGGGGAGCACACAGTCTTCGTCAGAGAT < 41bp 1 0.0440099699237594 1 0.255750805139542 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336770 chr9:19336755 nonsynonymous SNV 1.000 0 6 hm5C_associated_SNPs_41063 0 0 1 0 1 Nucleus 1 0.500231643804886 1 0.999536712390228 hm5C_site_40252 DeepMRMD:1;iRNA_m5C:0.999536712390228 40253 chr11 67052434 67052434 1 + C T UCEC 67052439 + 67052419 67052459 41 AACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCGGTAAG AACCGCCTCGAGTGGTGGGGCGAGGGCGAGGCCCCGGTAAG < 41bp 1 0.690321353112961 1 0.921181797981262 experiment 0.619357293774078 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052439 chr11:67052434 nonsynonymous SNV 0.983 3 16 hm5C_associated_SNPs_41064 0 0 1 0 1 chromatin 1 0.500231643921092 0.157636404037476 0.999536712157815 hm5C_site_40253 DeepMRMD:0.157636404037476;iRNA_m5C:0.999536712157815 40254 chr11 67052434 67052434 1 + C T UCEC 67052450 + 67052430 67052470 41 GTGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG GTGGTGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCG < 41bp 1 0.47609194344022 1 0.745021760463715 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052450 chr11:67052434 nonsynonymous SNV 0.983 3 5 hm5C_associated_SNPs_41065 0 0 1 0 1 chromatin 1 0.50023164392085 0.50995647907257 0.999536712158301 hm5C_site_40254 DeepMRMD:0.50995647907257;iRNA_m5C:0.999536712158301 40255 chr11 67052434 67052434 1 + C T UCEC 67052451 + 67052431 67052471 41 TGGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGG TGGTGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGG < 41bp 1 0.697894721606864 1 0.803953945636749 experiment 0.604210556786272 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052451 chr11:67052434 nonsynonymous SNV 0.983 3 4 hm5C_associated_SNPs_41066 0 0 1 0 1 chromatin 1 0.500231643921092 0.392092108726502 0.999536712157815 hm5C_site_40255 DeepMRMD:0.392092108726502;iRNA_m5C:0.999536712157815 40256 chr11 67052434 67052434 1 + C T UCEC 67052452 + 67052432 67052472 41 GGCGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG GGTGGGGCGAGGGCGAGGCCCCGGTAAGGAGCCCGTGCGGG < 41bp 1 0.52414211347276 1 0.705273568630219 experiment 0.95171577305448 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052452 chr11:67052434 nonsynonymous SNV 0.983 3 3 hm5C_associated_SNPs_41067 0 0 1 0 1 chromatin 1 0.500231643913664 0.589452862739562 0.999536712172672 hm5C_site_40256 DeepMRMD:0.589452862739562;iRNA_m5C:0.999536712172672 40257 chr6 145157474 145157474 1 + C T UCEC 145157491 + 145157471 145157511 41 CAGCACCTCCGAAGGGGGCTCCCTGTCGGTTCACCGCCAGA CAGTACCTCCGAAGGGGGCTCCCTGTCGGTTCACCGCCAGA < 41bp 1 0.0574186853256481 1 0.259549677371979 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145157491 chr6:145157474 nonsynonymous SNV 0.995 2 4 hm5C_associated_SNPs_41069 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40257 DeepMRMD:1;iRNA_m5C:0.999536712157815 40258 chr21 37617616 37617616 1 + C T UCEC 37617607 + 37617587 37617627 41 CCCGGACAGCAGCGAGCACACCGAGTCTGCAGATACAAGCT CCCGGACAGCAGCGAGCACACCGAGTCTGTAGATACAAGCT < 41bp 1 0.438669389730664 1 0.403220921754837 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOPEY2 ENSG00000142197 CDS Human protein_coding chr21:37617607 chr21:37617616 nonsynonymous SNV 0.237 4 30 hm5C_associated_SNPs_41070 0 0 0 0 0 cytosol 1 0.500231646832742 1 0.999536706334516 hm5C_site_40258 DeepMRMD:1;iRNA_m5C:0.999536706334516 40259 chr7 142460800 142460800 1 + A G UCEC 142460784 + 142460764 142460804 41 GTTGTCTCCTGGGGTGATGGCTGTGCCCAGAAGAACAAGCC GTTGTCTCCTGGGGTGATGGCTGTGCCCAGAAGAACGAGCC < 41bp 1 0.407550597574235 1 0.591984689235687 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460784 chr7:142460800 nonsynonymous SNV 0.443 1 37 hm5C_associated_SNPs_41071 0 0 0 0 0 Cytosol 1 0.500231643864847 0.816030621528626 0.999536712270306 hm5C_site_40259 DeepMRMD:0.816030621528626;iRNA_m5C:0.999536712270306 40260 chr7 99627517 99627517 1 + A G UCEC 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCGT < 41bp 1 0.516162144838957 1 0.140241891145706 experiment 0.967675710322087 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627517 nonsynonymous SNV 0.524 0 40 hm5C_associated_SNPs_41072 0 0 1 0 2 Cytosol 1 0.500231606625078 1 0.999536786749844 hm5C_site_40260 DeepMRMD:1;iRNA_m5C:0.999536786749844 40261 chr12 1890204 1890204 1 + A G UCEC 1890217 + 1890197 1890237 41 CAGTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAG CAGTGGGGCATGTTTGCCACCCCTCAGTATCGGGGAGTAAG < 41bp 1 0.0557974416581432 1 0.0311235189437866 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890217 chr12:1890204 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_41073 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40261 DeepMRMD:1;iRNA_m5C:0.999536712157815 40262 chr12 1890204 1890204 1 + A G UCEC 1890218 + 1890198 1890238 41 AGTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGA AGTGGGGCATGTTTGCCACCCCTCAGTATCGGGGAGTAAGA < 41bp 1 0.285637292452992 1 0.05394446849823 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890218 chr12:1890204 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_41074 0 0 1 0 1 chromatin 1 0.500231643921083 1 0.999536712157833 hm5C_site_40262 DeepMRMD:1;iRNA_m5C:0.999536712157833 40263 chr12 1890204 1890204 1 + A G UCEC 1890219 + 1890199 1890239 41 GTGGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAG GTGGGGCATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAG < 41bp 1 0.542094522998959 1 0.425941437482834 experiment 0.915810954002082 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890219 chr12:1890204 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_41075 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40263 DeepMRMD:1;iRNA_m5C:0.999536712157815 40264 chr12 1890204 1890204 1 + A G UCEC 1890221 + 1890201 1890241 41 GGGACATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAGCA GGGGCATGTTTGCCACCCCTCAGTATCGGGGAGTAAGAGCA < 41bp 1 0.650314924560179 1 0.836331725120544 experiment 0.699370150879642 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1890221 chr12:1890204 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_41076 0 0 1 0 1 chromatin 1 0.500231643921092 0.327336549758912 0.999536712157815 hm5C_site_40264 DeepMRMD:0.327336549758912;iRNA_m5C:0.999536712157815 40265 chr2 27455425 27455425 1 + C A UCEC 27455445 + 27455425 27455465 41 CTAACGTATTGGGGCACCACCCATGACCTCACCTTTCGAAC ATAACGTATTGGGGCACCACCCATGACCTCACCTTTCGAAC < 41bp 1 0.0654087008931432 1 0.114235013723373 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27455445 chr2:27455425 nonsynonymous SNV 0.975 3 1 hm5C_associated_SNPs_41077 0 0 1 0 0 Exosome 1 0.500231643907675 1 0.99953671218465 hm5C_site_40265 DeepMRMD:1;iRNA_m5C:0.99953671218465 40266 chr15 91456109 91456109 1 + C A UCEC 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCATACGTCCCCAAGGAGCCCCCCGTGCTGCG < 41bp 1 0.612621207835874 1 0.866792440414429 experiment 0.774757584328252 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456109 synonymous SNV . 0 12 hm5C_associated_SNPs_41078 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921084 0.266415119171142 0.999536712157832 hm5C_site_40266 DeepMRMD:0.266415119171142;iRNA_m5C:0.999536712157832 40267 chr17 29855735 29855735 1 + G A UCEC 29855723 + 29855703 29855743 41 AGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGGCGAGTTCA AGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGACGAGTTCA < 41bp 1 0.116728930779565 1 0.207984775304794 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29855723 chr17:29855735 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_41079 0 0 1 0 2 Ribosome 1 0.500231654747781 1 0.999536690504438 hm5C_site_40267 DeepMRMD:1;iRNA_m5C:0.999536690504438 40268 chr11 57428901 57428901 1 + T C UCEC 57428893 + 57428873 57428913 41 CTCATCATGGATATCCGGTTCATGGATCTGAAGTAGAGATC CTCATCATGGATATCCGGTTCATGGATCCGAAGTAGAGATC < 41bp 1 0.503336211001725 1 0.113647252321243 experiment 0.99332757799655 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLP1 ENSG00000172409 CDS Human protein_coding chr11:57428893 chr11:57428901 nonsynonymous SNV 0.967 3 29 hm5C_associated_SNPs_41080 0 0 1 0 0 Cytosol 1 0.500231643925039 1 0.999536712149923 hm5C_site_40268 DeepMRMD:1;iRNA_m5C:0.999536712149923 40269 chr16 67671689 67671689 1 + G T UCEC 67671677 + 67671657 67671697 41 AAAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAG AAAAAGAGCCAGATGCTGAGCCCGCAGAGGGATAGGAAGAG < 41bp 1 0.245508302627982 1 0.0788452625274658 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671677 chr16:67671689 stopgain 0.923 1 33 hm5C_associated_SNPs_41081 0 0 1 0 2 Nucleus 1 0.500231643861428 1 0.999536712277144 hm5C_site_40269 DeepMRMD:1;iRNA_m5C:0.999536712277144 40270 chr16 67671689 67671689 1 + G T UCEC 67671678 + 67671658 67671698 41 AAAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGG AAAAGAGCCAGATGCTGAGCCCGCAGAGGGATAGGAAGAGG < 41bp 1 0.605625795250408 1 0.403919249773026 experiment 0.788748409499185 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671678 chr16:67671689 stopgain 0.923 1 32 hm5C_associated_SNPs_41082 0 0 1 0 2 Nucleus 1 0.500231643923062 1 0.999536712153875 hm5C_site_40270 DeepMRMD:1;iRNA_m5C:0.999536712153875 40271 chr16 67671689 67671689 1 + G T UCEC 67671679 + 67671659 67671699 41 AAAGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGA AAAGAGCCAGATGCTGAGCCCGCAGAGGGATAGGAAGAGGA < 41bp 1 0.441987428515821 1 0.205687314271927 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671679 chr16:67671689 stopgain 0.923 1 31 hm5C_associated_SNPs_41083 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40271 DeepMRMD:1;iRNA_m5C:0.999536712157815 40272 chr16 67671689 67671689 1 + G T UCEC 67671681 + 67671661 67671701 41 AGAGCCAGATGCTGAGCCCGCAGAGGGAGAGGAAGAGGAGG AGAGCCAGATGCTGAGCCCGCAGAGGGATAGGAAGAGGAGG < 41bp 1 0.646013379256207 1 0.571854829788208 experiment 0.707973241487585 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CTCF ENSG00000102974 CDS Human protein_coding chr16:67671681 chr16:67671689 stopgain 0.923 1 29 hm5C_associated_SNPs_41084 0 0 1 0 2 Nucleus 1 0.500231643921092 0.856290340423584 0.999536712157815 hm5C_site_40272 DeepMRMD:0.856290340423584;iRNA_m5C:0.999536712157815 40273 chr3 33855118 33855118 1 + T C UCEC 33855117 + 33855097 33855137 41 TTTTTGGAGGCTCTGTAAAACTGGGTATGTAATTTTTAATA TTTTTGGAGGCTCTGTAAAACCGGGTATGTAATTTTTAATA < 41bp 1 0.661143254090448 1 0.408660918474197 experiment 0.677713491819103 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33855117 chr3:33855118 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_41085 0 0 1 0 2 Nucleus 1 0.500231643915206 1 0.999536712169587 hm5C_site_40273 DeepMRMD:1;iRNA_m5C:0.999536712169587 40274 chr1 110465791 110465791 1 + T C UCEC 110465798 + 110465778 110465818 41 GTTCTTTCAGATGTGGTGACCAAGCCTGATTGCAACTGCCT GTTCTTTCAGATGCGGTGACCAAGCCTGATTGCAACTGCCT < 41bp 1 0.235483426031076 1 0.193927407264709 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110465798 chr1:110465791 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_41086 0 0 0 0 1 chromatin 1 0.500231643921114 1 0.999536712157771 hm5C_site_40274 DeepMRMD:1;iRNA_m5C:0.999536712157771 40275 chr11 65271704 65271704 1 + T C UCEC 65271692 + 65271672 65271712 41 GTTCTAGTGAGTGTATGAGACCTTGCAGTGAGTTTATCAGC GTTCTAGTGAGTGTATGAGACCTTGCAGTGAGCTTATCAGC < 41bp 1 0.12203272365866 1 0.0611089766025543 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65271692 chr11:65271704 . . 0 33 hm5C_associated_SNPs_41087 0 0 1 0 0 unknown 1 0.500469087643848 1 0.999061824712304 hm5C_site_40275 DeepMRMD:1;iRNA_m5C:0.999061824712304 40276 chr13 114203818 114203818 1 + T C UCEC 114203825 + 114203805 114203845 41 TGCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCA TGCAATCACGAGGCGTGTGCCCAGACCGGAGAGACGGTCCA < 41bp 1 0.693878213502892 1 0.143277257680893 experiment 0.612243572994216 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203825 chr13:114203818 nonsynonymous SNV 0.089 1 14 hm5C_associated_SNPs_41088 0 0 1 0 1 Ribosome 1 0.500231643920146 1 0.999536712159707 hm5C_site_40276 DeepMRMD:1;iRNA_m5C:0.999536712159707 40277 chr13 114203818 114203818 1 + T C UCEC 114203826 + 114203806 114203846 41 GCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG GCAATCACGAGGCGTGTGCCCAGACCGGAGAGACGGTCCAG < 41bp 1 0.638928997919891 1 0.290119409561157 experiment 0.722142004160217 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203826 chr13:114203818 nonsynonymous SNV 0.089 1 13 hm5C_associated_SNPs_41089 0 0 1 0 1 Ribosome 1 0.500231643823165 1 0.999536712353671 hm5C_site_40277 DeepMRMD:1;iRNA_m5C:0.999536712353671 40278 chr2 235943705 235943705 1 + A G UCEC 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGGGGGGACC < 41bp 1 0.263451434206765 1 0.259331881999969 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943705 nonsynonymous SNV 0.998 4 34 hm5C_associated_SNPs_41090 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40278 DeepMRMD:1;iRNA_m5C:0.999536712157815 40279 chr3 126751383 126751383 1 + A G UCEC 126751389 + 126751369 126751409 41 CTGGGCAAGGACTCACCCTCCAACAAGCTGCTCTACGCCAA CTGGGCAAGGACTCGCCCTCCAACAAGCTGCTCTACGCCAA < 41bp 1 0.459762395078453 1 0.578338205814362 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751389 chr3:126751383 synonymous SNV . 0 15 hm5C_associated_SNPs_41092 0 0 1 0 1 Ribosome 1 0.500231643921092 0.843323588371276 0.999536712157815 hm5C_site_40279 DeepMRMD:0.843323588371276;iRNA_m5C:0.999536712157815 40280 chr12 132546867 132546867 1 + A G UCEC 132546853 + 132546833 132546873 41 CCCCGGCACGGTCTTTGGTGCCCCAAGTGTCCCAAGGTAAA CCCCGGCACGGTCTTTGGTGCCCCAAGTGTCCCAGGGTAAA < 41bp 1 0.140998748824473 1 0.0674214959144592 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546853 chr12:132546867 synonymous SNV . 0 35 hm5C_associated_SNPs_41093 0 0 1 0 1 Cytosol 1 0.500231643814338 1 0.999536712371323 hm5C_site_40280 DeepMRMD:1;iRNA_m5C:0.999536712371323 40281 chr17 17697203 17697203 1 + A G UCEC 17697208 + 17697188 17697228 41 CCAAGTATCAGCACTACGGGCAGCAAGGCCAGGGCTACTGC CCAAGTATCAGCACTGCGGGCAGCAAGGCCAGGGCTACTGC < 41bp 1 0.48644576447731 1 0.243776917457581 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAI1 ENSG00000108557 CDS Human protein_coding chr17:17697208 chr17:17697203 nonsynonymous SNV 0.991 4 16 hm5C_associated_SNPs_41094 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_40281 DeepMRMD:1;iRNA_m5C:0.999536712157816 40282 chr7 150772765 150772765 1 + T C UCEC 150772775 + 150772755 150772795 41 TTCCTGTACATGGGAGTCACCTCCCTTAACGGGATCCAGTT TTCCTGTACACGGGAGTCACCTCCCTTAACGGGATCCAGTT < 41bp 1 0.311456069405473 1 0.371352165937424 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150772775 chr7:150772765 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_41096 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40282 DeepMRMD:1;iRNA_m5C:0.999536712157815 40283 chr15 40259727 40259727 1 + T A UCEC 40259728 + 40259708 40259748 41 CAGGCCCCATCCCTGTGCATCAGCTTCGCAGGTACACAGCT CAGGCCCCATCCCTGTGCAACAGCTTCGCAGGTACACAGCT < 41bp 1 0.263818102599705 1 0.128610849380493 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40259728 chr15:40259727 nonsynonymous SNV 0.924 1 20 hm5C_associated_SNPs_41097 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40283 DeepMRMD:1;iRNA_m5C:0.999536712157815 40284 chr19 38871592 38871592 1 + C A UCEC 38871607 + 38871587 38871627 41 ATCCCCGCCGAGAGCTACACCTTCTTCATTGACATCCTGCT ATCCCAGCCGAGAGCTACACCTTCTTCATTGACATCCTGCT < 41bp 1 0.148601134528132 1 0.0511108636856079 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38871607 chr19:38871592 synonymous SNV . 0 6 hm5C_associated_SNPs_41098 0 0 1 0 2 Ribosome 1 0.500231643362633 1 0.999536713274734 hm5C_site_40284 DeepMRMD:1;iRNA_m5C:0.999536713274734 40285 chr16 30096343 30096343 1 + G A UCEC 30096347 + 30096327 30096367 41 CCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGC CCCCAAGAGACACGGGACATCCCCTCCAAGAAGCCCGTGGC < 41bp 1 0.350585621879686 1 0.210889339447021 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096347 chr16:30096343 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_41099 0 0 1 0 1 Ribosome 1 0.500231643855666 1 0.999536712288668 hm5C_site_40285 DeepMRMD:1;iRNA_m5C:0.999536712288668 40286 chr9 107515202 107515202 1 + G A UCEC 107515213 + 107515193 107515233 41 TTGCTCATCGAACTGAAGTTCGGAAAGCCTTGGCCAAAGAT TTGCTCATCAAACTGAAGTTCGGAAAGCCTTGGCCAAAGAT < 41bp 1 0.696842208452964 1 0.853995323181152 experiment 0.606315583094072 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107515213 chr9:107515202 nonsynonymous SNV 0.929 3 10 hm5C_associated_SNPs_41100 0 0 1 0 1 Ribosome 1 0.500231643921092 0.292009353637696 0.999536712157815 hm5C_site_40286 DeepMRMD:0.292009353637696;iRNA_m5C:0.999536712157815 40287 chr22 35783067 35783067 1 + C A UCEC 35783079 + 35783059 35783099 41 ACCAAGTTCAAGCAGCTCTACCGCTCCCGCATGAACTCCCT ACCAAGTTAAAGCAGCTCTACCGCTCCCGCATGAACTCCCT < 41bp 1 0.158798304822763 1 0.0881662964820862 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35783079 chr22:35783067 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_41101 0 0 1 0 0 exosome 1 0.500231643921089 1 0.999536712157823 hm5C_site_40287 DeepMRMD:1;iRNA_m5C:0.999536712157823 40288 chr17 64785035 64785035 1 + C T UCEC 64785043 + 64785023 64785063 41 CATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAA CATGCCTTCTTCTGGAGGATCGACTGGGAAAAACTGGAGAA < 41bp 1 0.304012142382962 1 0.347363293170929 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785043 chr17:64785035 nonsynonymous SNV 0.998 4 13 hm5C_associated_SNPs_41102 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40288 DeepMRMD:1;iRNA_m5C:0.999536712157815 40289 chr17 64785035 64785035 1 + C T UCEC 64785046 + 64785026 64785066 41 GCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAG GCCTTCTTCTGGAGGATCGACTGGGAAAAACTGGAGAACAG < 41bp 1 0.593801080058008 1 0.461277037858963 experiment 0.812397839883983 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCA ENSG00000154229 CDS Human protein_coding chr17:64785046 chr17:64785035 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_41103 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40289 DeepMRMD:1;iRNA_m5C:0.999536712157815 40290 chr3 124053153 124053153 1 + G A UCEC 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGACCCCTGAGCCCTGGGAACTCCGAATCCCTCA < 41bp 1 0.607681057282646 1 0.764022946357727 experiment 0.784637885434707 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053153 synonymous SNV . 0 10 hm5C_associated_SNPs_41104 0 0 0 0 1 nucleoplasm 1 0.500231643921089 0.471954107284546 0.999536712157823 hm5C_site_40290 DeepMRMD:0.471954107284546;iRNA_m5C:0.999536712157823 40291 chr3 160122152 160122152 1 + T G UCEC 160122141 + 160122121 160122161 41 GGATGATTATGAAGTCATTCCTAACAGTAATTTCTATGTAT GGATGATTATGAAGTCATTCCTAACAGTAATGTCTATGTAT < 41bp 1 0.10881399030218 1 0.0322751998901367 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122141 chr3:160122152 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_41105 0 0 1 3 1 Nucleus 1 0.500227475007837 1 0.999545049984325 hm5C_site_40291 DeepMRMD:1;iRNA_m5C:0.999545049984325 40292 chr3 160122152 160122152 1 + T G UCEC 160122171 + 160122151 160122191 41 TTTCTATGTATCCAGAACGGCCTGCAGAGATAATACTTCTG TGTCTATGTATCCAGAACGGCCTGCAGAGATAATACTTCTG < 41bp 1 0.0348665170782254 1 0.0605757534503937 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC4 ENSG00000113810 CDS Human protein_coding chr3:160122171 chr3:160122152 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_41106 0 0 1 3 1 Nucleus 1 0.500231643608757 1 0.999536712782486 hm5C_site_40292 DeepMRMD:1;iRNA_m5C:0.999536712782486 40293 chr7 66660265 66660265 1 + G A UCEC 66660256 + 66660236 66660276 41 TTGTCCACGAGTTGGTGGATCTGATCCCCGAATATGAAATT TTGTCCACGAGTTGGTGGATCTGATCCCCAAATATGAAATT < 41bp 1 0.268641639358072 1 0.0681069493293762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66660256 chr7:66660265 nonsynonymous SNV 0.020 0 30 hm5C_associated_SNPs_41107 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921319 1 0.999536712157361 hm5C_site_40293 DeepMRMD:1;iRNA_m5C:0.999536712157361 40294 chr3 58112453 58112453 1 + G T UCEC 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCCTTTCGCACCGGGGGATTACTATGTTA < 41bp 1 0.469296722049702 1 0.106759041547775 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112453 nonsynonymous SNV 0.974 5 35 hm5C_associated_SNPs_41108 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_40294 DeepMRMD:1;iRNA_m5C:0.999536712157812 40295 chr3 58112453 58112453 1 + G T UCEC 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCCTTTCGCACCGGGGGATTACTATGTTAAT < 41bp 1 0.207750743172245 1 0.27865332365036 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112453 nonsynonymous SNV 0.974 5 33 hm5C_associated_SNPs_41109 0 0 1 0 1 Cytosol 1 0.500231708637631 1 0.999536582724737 hm5C_site_40295 DeepMRMD:1;iRNA_m5C:0.999536582724737 40296 chr3 58112453 58112453 1 + G T UCEC 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCCTTTCGCACCGGGGGATTACTATGTTAATA < 41bp 1 0.471808073379017 1 0.857242465019226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112453 nonsynonymous SNV 0.974 5 32 hm5C_associated_SNPs_41110 0 0 1 0 1 Cytosol 1 0.500231643921092 0.285515069961548 0.999536712157815 hm5C_site_40296 DeepMRMD:0.285515069961548;iRNA_m5C:0.999536712157815 40297 chr11 43411205 43411205 1 + C T UCEC 43411217 + 43411197 43411237 41 AACAGAAACAATTAGTTGCTCAAAAAATTCACATAGAAGAG AACAGAAATAATTAGTTGCTCAAAAAATTCACATAGAAGAG < 41bp 1 0.434606210722176 1 0.374378025531769 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC17 ENSG00000052841 CDS Human protein_coding chr11:43411217 chr11:43411205 stopgain 0.999 1 9 hm5C_associated_SNPs_41111 0 0 1 0 1 Nucleus 1 0.500231814045658 1 0.999536371908685 hm5C_site_40297 DeepMRMD:1;iRNA_m5C:0.999536371908685 40298 chrX 128695229 128695229 1 + G T UCEC 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACAAGAATGGTCCATGTCTGTAGAGAGAGGTT < 41bp 1 0.0678753847701451 1 0.0376727879047394 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695229 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_41112 0 0 1 0 2 Cytosol 1 0.500217016218608 1 0.999565967562785 hm5C_site_40298 DeepMRMD:1;iRNA_m5C:0.999565967562785 40299 chr18 56402460 56402460 1 + T C UCEC 56402451 + 56402431 56402471 41 AAGGTGTCAAGGAGCAGAAGCTTTTGAAATCCAGCATTCTG AAGGTGTCAAGGAGCAGAAGCTTTTGAAACCCAGCATTCTG < 41bp 1 0.0462053659392979 1 0.0430289804935455 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MALT1 ENSG00000172175 CDS Human protein_coding chr18:56402451 chr18:56402460 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_41114 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40299 DeepMRMD:1;iRNA_m5C:0.999536712157815 40300 chr18 61648964 61648964 1 + G T UCEC 61648969 + 61648949 61648989 41 TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATCAGGC TTGCAGGACTTTAAATAATACTGTCAGAAGTTCTATCAGGC < 41bp 1 0.176241183689843 1 0.124266028404236 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61648969 chr18:61648964 stopgain 0.156 0 16 hm5C_associated_SNPs_41115 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_40300 DeepMRMD:1;iRNA_m5C:0.999536712157816 40301 chr2 228148555 228148555 1 + G A UCEC 228148543 + 228148523 228148563 41 CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAG CATTGGCCCTCCAGGGCCCCCTGGGAACCCAGACACACCAG < 41bp 1 0.643747170443805 1 0.669244289398193 experiment 0.71250565911239 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148543 chr2:228148555 nonsynonymous SNV 0.118 5 33 hm5C_associated_SNPs_41116 0 0 0 0 2 nucleus 1 0.500231643921092 0.661511421203614 0.999536712157815 hm5C_site_40301 DeepMRMD:0.661511421203614;iRNA_m5C:0.999536712157815 40302 chr6 125550327 125550327 1 + A G UCEC 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GAGGTAAAACAAAAACTCGGCATGAACCTGATGAATGAATT < 41bp 1 0.251642778106928 1 0.0841017663478851 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550327 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_41117 0 0 1 0 2 Ribosome 1 0.500231643920983 1 0.999536712158033 hm5C_site_40302 DeepMRMD:1;iRNA_m5C:0.999536712158033 40303 chr1 201489445 201489445 1 + G T UCEC 201489464 + 201489444 201489484 41 AGATTGTGCCTGCCACCTTACACCGCAGCTGTCCAGAGACT ATATTGTGCCTGCCACCTTACACCGCAGCTGTCCAGAGACT < 41bp 1 0.661043865468832 1 0.277596712112427 experiment 0.677912269062337 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS10P7 ENSG00000223396;ENSG00000242150 ncRNA_exonic Human other chr1:201489464 chr1:201489445 . . 0 2 hm5C_associated_SNPs_41118 0 0 0 0 0 unknown 1 0.500280441038374 1 0.999439117923252 hm5C_site_40303 DeepMRMD:1;iRNA_m5C:0.999439117923252 40304 chr1 164789347 164789347 1 + T G UCEC 164789352 + 164789332 164789372 41 TCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAA TCAAACTCTGGAGATGTGTTCATGAGCGTGCAGTCACTCAA < 41bp 1 0.597755739826246 1 0.108640342950821 experiment 0.804488520347507 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789352 chr1:164789347 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_41119 0 0 0 0 2 Ribosome 1 0.500232866583664 1 0.999534266832672 hm5C_site_40304 DeepMRMD:1;iRNA_m5C:0.999534266832672 40305 chr17 42152816 42152816 1 + C A UCEC 42152812 + 42152792 42152832 41 TCTTTACACTGGGCCTGGATCTTTCTTGGTAAGTCTCGCTT TCTTTACACTGGGCCTGGATCTTTATTGGTAAGTCTCGCTT < 41bp 1 0.448636944410884 1 0.297569334506989 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42152812 chr17:42152816 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_41120 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40305 DeepMRMD:1;iRNA_m5C:0.999536712157815 40306 chr6 26204962 26204962 1 + T G UCEC 26204977 + 26204957 26204997 41 GGCATTACCAAGCCTGCCATCCGGCGCCTTGCTCGTCGCGG GGCATGACCAAGCCTGCCATCCGGCGCCTTGCTCGTCGCGG < 41bp 1 0.624515612478328 1 0.924871265888214 experiment 0.750968775043344 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient HIST1H4E ENSG00000198518 CDS Human other chr6:26204977 chr6:26204962 nonsynonymous SNV 0.222 0 6 hm5C_associated_SNPs_41121 0 0 1 0 0 Nucleus 1 0.500231643921093 0.150257468223572 0.999536712157815 hm5C_site_40306 DeepMRMD:0.150257468223572;iRNA_m5C:0.999536712157815 40307 chr7 91714844 91714844 1 + G A UCEC 91714852 + 91714832 91714872 41 TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA TGAAGGCATGCAAGTGCTTTCTCTCACTGAGTCTCCCTATA < 41bp 1 0.192242608643985 1 0.024238795042038 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714852 chr7:91714844 synonymous SNV . 0 13 hm5C_associated_SNPs_41122 0 0 0 0 1 Nucleus 1 0.50016153141071 1 0.999676937178579 hm5C_site_40307 DeepMRMD:1;iRNA_m5C:0.999676937178579 40308 chr7 91714844 91714844 1 + G A UCEC 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCATGCAAGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA < 41bp 1 0.326442612323056 1 0.183080196380615 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714844 synonymous SNV . 0 9 hm5C_associated_SNPs_41123 0 0 0 0 1 Nucleus 1 0.500231643918652 1 0.999536712162696 hm5C_site_40308 DeepMRMD:1;iRNA_m5C:0.999536712162696 40309 chr7 91714844 91714844 1 + G A UCEC 91714864 + 91714844 91714884 41 GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG AGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG < 41bp 1 0.195379110075427 1 0.268511444330215 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714864 chr7:91714844 synonymous SNV . 0 1 hm5C_associated_SNPs_41124 0 0 0 0 1 Nucleus 1 0.500231643926369 1 0.999536712147262 hm5C_site_40309 DeepMRMD:1;iRNA_m5C:0.999536712147262 40310 chr22 46681142 46681142 1 + A G UCEC 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGGATATGAGGCCGCGCTGAC < 41bp 1 0.181528581822201 1 0.522590219974518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681142 nonsynonymous SNV 0.041 1 23 hm5C_associated_SNPs_41125 0 0 1 0 2 Ribosome 1 0.500231643921103 0.954819560050964 0.999536712157793 hm5C_site_40310 DeepMRMD:0.954819560050964;iRNA_m5C:0.999536712157793 40311 chr22 42042985 42042985 1 + A C UCEC 42042976 + 42042956 42042996 41 TCCAGAAGGCTCTCAAGCCTCCTCCAATAAAGCTCTATCGG TCCAGAAGGCTCTCAAGCCTCCTCCAATACAGCTCTATCGG < 41bp 1 0.102044446421806 1 0.182749718427658 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42042976 chr22:42042985 nonsynonymous SNV 0.350 1 30 hm5C_associated_SNPs_41126 0 0 1 0 1 Cytosol 1 0.500231687626929 1 0.999536624746142 hm5C_site_40311 DeepMRMD:1;iRNA_m5C:0.999536624746142 40312 chr1 10328295 10328295 1 + A G UCEC 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATGATGAGACCAACCTTTCCACTGAGAAGGTAGG < 41bp 1 0.00340755759332981 1 0.0318421423435211 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328295 nonsynonymous SNV 0.886 0 10 hm5C_associated_SNPs_41127 0 0 1 0 2 Cytosol 1 0.500231643921098 1 0.999536712157804 hm5C_site_40312 DeepMRMD:1;iRNA_m5C:0.999536712157804 40313 chrX 70779268 70779268 1 + A G UCEC 70779251 + 70779231 70779271 41 CTTATGCAGTCTATTCCAGGCATGCACAATCCTGATAAATT CTTATGCAGTCTATTCCAGGCATGCACAATCCTGATAGATT < 41bp 1 0.065906867175863 1 0.0531978607177734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70779251 chrX:70779268 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_41128 0 0 1 0 1 Nucleus 1 0.500231643802035 1 0.999536712395931 hm5C_site_40313 DeepMRMD:1;iRNA_m5C:0.999536712395931 40314 chr19 17424881 17424881 1 + G A UCEC 17424890 + 17424870 17424910 41 CAATTTTAGTCGATTTCACGCGGACTCCGTGTGCAAAGCCT CAATTTTAGTCAATTTCACGCGGACTCCGTGTGCAAAGCCT < 41bp 1 0.166790051677606 1 0.16892609000206 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDA1 ENSG00000130311 CDS Human protein_coding chr19:17424890 chr19:17424881 nonsynonymous SNV 0.885 1 12 hm5C_associated_SNPs_41129 0 0 1 0 2 Ribosome 1 0.50023164412206 1 0.99953671175588 hm5C_site_40314 DeepMRMD:1;iRNA_m5C:0.99953671175588 40315 chr11 118369106 118369106 1 + C T UCEC 118369113 + 118369093 118369133 41 ATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCA ATTCTGCCAAAAGTCAGGAGCCACCGTGGGTTGCTGTCTCA < 41bp 1 0.0211967557983011 1 0.163427501916885 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118369113 chr11:118369106 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_41130 0 0 1 0 1 Cytosol 1 0.500231645015961 1 0.999536709968078 hm5C_site_40315 DeepMRMD:1;iRNA_m5C:0.999536709968078 40316 chr15 36989526 36989526 1 + C T UCEC 36989527 + 36989507 36989547 41 TAACTGAAACTTCCCAGTGCCATTGGTCATGAGCATGAGGT TAACTGAAACTTCCCAGTGTCATTGGTCATGAGCATGAGGT < 41bp 1 0.130316443389098 1 0.0339178740978241 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C15orf41 ENSG00000186073 CDS Human protein_coding chr15:36989527 chr15:36989526 nonsynonymous SNV 0.999 1 20 hm5C_associated_SNPs_41131 0 0 1 0 2 Cytosol 1 0.500231211433028 1 0.999537577133944 hm5C_site_40316 DeepMRMD:1;iRNA_m5C:0.999537577133944 40317 chr1 22336271 22336271 1 + T C UCEC 22336262 + 22336242 22336282 41 CTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTG CTGGCAGGTCCACGGTGTGACCAGCTTTGCTTCTGCCTTTG < 41bp 1 0.343454923238248 1 0.0952849388122559 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336262 chr1:22336271 nonsynonymous SNV 0.514 1 30 hm5C_associated_SNPs_41133 0 0 0 0 1 Endoplasmic reticulum 1 0.50023163652253 1 0.999536726954939 hm5C_site_40317 DeepMRMD:1;iRNA_m5C:0.999536726954939 40318 chr1 22336271 22336271 1 + T C UCEC 22336263 + 22336243 22336283 41 TGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGG TGGCAGGTCCACGGTGTGACCAGCTTTGCTTCTGCCTTTGG < 41bp 1 0.64855045333844 1 0.181793004274368 experiment 0.70289909332312 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336263 chr1:22336271 nonsynonymous SNV 0.514 1 29 hm5C_associated_SNPs_41134 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644705516 1 0.999536710588968 hm5C_site_40318 DeepMRMD:1;iRNA_m5C:0.999536710588968 40319 chr1 22336271 22336271 1 + T C UCEC 22336266 + 22336246 22336286 41 CAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTG CAGGTCCACGGTGTGACCAGCTTTGCTTCTGCCTTTGGCTG < 41bp 1 0.108921473395409 1 0.0587840974330902 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336266 chr1:22336271 nonsynonymous SNV 0.514 1 26 hm5C_associated_SNPs_41135 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643913907 1 0.999536712172186 hm5C_site_40319 DeepMRMD:1;iRNA_m5C:0.999536712172186 40320 chr1 22336271 22336271 1 + T C UCEC 22336274 + 22336254 22336294 41 CGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCA CGGTGTGACCAGCTTTGCTTCTGCCTTTGGCTGCAACTTCA < 41bp 1 0.483272246766116 1 0.0849892795085907 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336274 chr1:22336271 nonsynonymous SNV 0.514 1 18 hm5C_associated_SNPs_41136 0 0 0 0 1 Endoplasmic reticulum 1 0.500231649545352 1 0.999536700909297 hm5C_site_40320 DeepMRMD:1;iRNA_m5C:0.999536700909297 40321 chr1 22336271 22336271 1 + T C UCEC 22336277 + 22336257 22336297 41 TGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCT TGTGACCAGCTTTGCTTCTGCCTTTGGCTGCAACTTCATCT < 41bp 1 0.0459764659756 1 0.0182113945484161 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336277 chr1:22336271 nonsynonymous SNV 0.514 1 15 hm5C_associated_SNPs_41137 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40321 DeepMRMD:1;iRNA_m5C:0.999536712157815 40322 chr1 22336271 22336271 1 + T C UCEC 22336278 + 22336258 22336298 41 GTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTG GTGACCAGCTTTGCTTCTGCCTTTGGCTGCAACTTCATCTG < 41bp 1 0.332940874299569 1 0.0730965435504913 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336278 chr1:22336271 nonsynonymous SNV 0.514 1 14 hm5C_associated_SNPs_41138 0 0 0 0 1 Endoplasmic reticulum 1 0.50023359940586 1 0.999532801188279 hm5C_site_40322 DeepMRMD:1;iRNA_m5C:0.999532801188279 40323 chr1 22336271 22336271 1 + T C UCEC 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGCTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC < 41bp 1 0.239228855050774 1 0.0597550868988037 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336271 nonsynonymous SNV 0.514 1 5 hm5C_associated_SNPs_41140 0 0 0 0 1 Endoplasmic reticulum 1 0.500231648128445 1 0.999536703743109 hm5C_site_40323 DeepMRMD:1;iRNA_m5C:0.999536703743109 40324 chr1 22336271 22336271 1 + T C UCEC 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GCTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT < 41bp 1 0.599737418367576 1 0.756403744220734 experiment 0.800525163264847 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336271 nonsynonymous SNV 0.514 1 2 hm5C_associated_SNPs_41141 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644979346 0.487192511558532 0.999536710041308 hm5C_site_40324 DeepMRMD:0.487192511558532;iRNA_m5C:0.999536710041308 40325 chr9 134064467 134064467 1 + T G UCEC 134064468 + 134064448 134064488 41 AATAAATTCCCTTAAGCCATCTGGGCCTACACCAGCATCCG AATAAATTCCCTTAAGCCAGCTGGGCCTACACCAGCATCCG < 41bp 1 0.437443530612693 1 0.482708841562271 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP214 ENSG00000126883 CDS Human protein_coding chr9:134064468 chr9:134064467 nonsynonymous SNV 0.921 0 20 hm5C_associated_SNPs_41142 0 0 1 3 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40325 DeepMRMD:1;iRNA_m5C:0.999536712157815 40326 chrX 69519027 69519027 1 + G A UCEC 69519014 + 69518994 69519034 41 GCCCATCTCGTGAGAAAGCTCAAATAAATATACGAGAGGAT GCCCATCTCGTGAGAAAGCTCAAATAAATATACAAGAGGAT < 41bp 1 0.135135662770961 1 0.229261010885239 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69519014 chrX:69519027 nonsynonymous SNV 0.991 3 34 hm5C_associated_SNPs_41143 0 0 1 0 2 chromatin 1 0.500231644044459 1 0.999536711911081 hm5C_site_40326 DeepMRMD:1;iRNA_m5C:0.999536711911081 40327 chr6 32134695 32134695 1 + G A UCEC 32134701 + 32134681 32134721 41 CCTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTC CCTCAGCCATCTGCACCAAGCCTTGCCTGAACGGAGGCGTC < 41bp 1 0.0564479003160598 1 0.0348811149597168 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134701 chr6:32134695 nonsynonymous SNV 0.987 0 15 hm5C_associated_SNPs_41144 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40327 DeepMRMD:1;iRNA_m5C:0.999536712157815 40328 chr6 32134695 32134695 1 + G A UCEC 32134702 + 32134682 32134722 41 CTCAGCCATCTGCGCCAAGCCTTGCCTGAACGGAGGCGTCT CTCAGCCATCTGCACCAAGCCTTGCCTGAACGGAGGCGTCT < 41bp 1 0.172252662727201 1 0.035174697637558 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EGFL8 ENSG00000241404 CDS Human protein_coding chr6:32134702 chr6:32134695 nonsynonymous SNV 0.987 0 14 hm5C_associated_SNPs_41145 0 0 1 0 2 chromatin 1 0.500231635914247 1 0.999536728171506 hm5C_site_40328 DeepMRMD:1;iRNA_m5C:0.999536728171506 40329 chr10 75548539 75548539 1 + G A UCEC 75548529 + 75548509 75548549 41 ACCCACCAGTGCCTGAGCAGCTACAGCTCCGAATTGCTTTT ACCCACCAGTGCCTGAGCAGCTACAGCTCCAAATTGCTTTT < 41bp 1 0.6224261957758 1 0.455345630645752 experiment 0.7551476084484 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75548529 chr10:75548539 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_41146 0 0 0 0 1 Cytosol 1 0.500239425495153 1 0.999521149009694 hm5C_site_40329 DeepMRMD:1;iRNA_m5C:0.999521149009694 40330 chr16 70164345 70164345 1 + G A UCEC 70164350 + 70164330 70164370 41 TCAGATCTATGACCGGACATCTGTTCTTCATGTAATGGTCA TCAGATCTATGACCGAACATCTGTTCTTCATGTAATGGTCA < 41bp 1 0.0676036356598305 1 0.0441977977752686 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70164350 chr16:70164345 synonymous SNV . 0 16 hm5C_associated_SNPs_41147 0 0 0 0 1 Nucleus 1 0.500231641118891 1 0.999536717762219 hm5C_site_40330 DeepMRMD:1;iRNA_m5C:0.999536717762219 40331 chr15 57554394 57554394 1 + G T UCEC 57554381 + 57554361 57554401 41 ACTTCAAGCACAGACCTGAACCATAAAACACAAGAAAATTA ACTTCAAGCACAGACCTGAACCATAAAACACAATAAAATTA < 41bp 1 0.162723718062768 1 0.184533983469009 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554381 chr15:57554394 stopgain 0.997 1 34 hm5C_associated_SNPs_41148 0 0 1 0 1 Cytosol 1 0.500231643576545 1 0.999536712846911 hm5C_site_40331 DeepMRMD:1;iRNA_m5C:0.999536712846911 40332 chr15 57554394 57554394 1 + G T UCEC 57554382 + 57554362 57554402 41 CTTCAAGCACAGACCTGAACCATAAAACACAAGAAAATTAT CTTCAAGCACAGACCTGAACCATAAAACACAATAAAATTAT < 41bp 1 0.244079644847906 1 0.468483924865723 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554382 chr15:57554394 stopgain 0.997 1 33 hm5C_associated_SNPs_41149 0 0 1 0 1 Cytosol 1 0.500231522642578 1 0.999536954714844 hm5C_site_40332 DeepMRMD:1;iRNA_m5C:0.999536954714844 40333 chr15 57554394 57554394 1 + G T UCEC 57554389 + 57554369 57554409 41 CACAGACCTGAACCATAAAACACAAGAAAATTATAGAGGTA CACAGACCTGAACCATAAAACACAATAAAATTATAGAGGTA < 41bp 1 0.51752856508092 1 0.474849432706833 experiment 0.964942869838159 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554389 chr15:57554394 stopgain 0.997 1 26 hm5C_associated_SNPs_41150 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40333 DeepMRMD:1;iRNA_m5C:0.999536712157815 40334 chr19 48675220 48675220 1 + C T UCEC 48675236 + 48675216 48675256 41 CTGGCGCGCTGCCGCTGGGCCAGTGCGCCCCCGCTCTACAC CTGGTGCGCTGCCGCTGGGCCAGTGCGCCCCCGCTCTACAC < 41bp 1 0.63991537546821 1 0.35101917386055 experiment 0.72016924906358 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control C19orf68 ENSG00000185453 CDS Human protein_coding chr19:48675236 chr19:48675220 nonsynonymous SNV 0.988 0 5 hm5C_associated_SNPs_41151 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40334 DeepMRMD:1;iRNA_m5C:0.999536712157815 40335 chr2 219676983 219676983 1 + A G UCEC 219676979 + 219676959 219676999 41 GGTACCAGCTGCGCCAGGCTCTGAACCAGCGGTTGCTGAAG GGTACCAGCTGCGCCAGGCTCTGAGCCAGCGGTTGCTGAAG < 41bp 1 0.697356205254994 1 0.673055052757263 experiment 0.605287589490012 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219676979 chr2:219676983 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_41153 0 0 1 0 1 cytosol 1 0.500231643921092 0.653889894485474 0.999536712157815 hm5C_site_40335 DeepMRMD:0.653889894485474;iRNA_m5C:0.999536712157815 40336 chr12 48528818 48528818 1 + G T UCEC 48528825 + 48528805 48528845 41 CAGAAGACATCAAGAATGTTCGTATGAATGAAGCCAGAGAG CAGAAGACATCAATAATGTTCGTATGAATGAAGCCAGAGAG < 41bp 1 0.217679776126148 1 0.182522237300873 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PFKM ENSG00000152556 CDS Human protein_coding chr12:48528825 chr12:48528818 nonsynonymous SNV 0.761 4 14 hm5C_associated_SNPs_41154 0 0 1 0 2 Nucleus 1 0.500232128280889 1 0.999535743438222 hm5C_site_40336 DeepMRMD:1;iRNA_m5C:0.999535743438222 40337 chr5 131976476 131976476 1 + C A UCEC 131976460 + 131976440 131976480 41 AGCCAACAACAAATCTTGACCGAGAAAACATTGAATCTCTT AGCCAACAACAAATCTTGACCGAGAAAACATTGAATATCTT < 41bp 1 0.605144985691502 1 0.495613366365433 experiment 0.789710028616996 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131976460 chr5:131976476 nonsynonymous SNV 0.977 3 37 hm5C_associated_SNPs_41155 0 0 1 0 1 Cytosol 1 0.500231647391792 1 0.999536705216415 hm5C_site_40337 DeepMRMD:1;iRNA_m5C:0.999536705216415 40338 chr3 183853312 183853312 1 + C A UCEC 183853320 + 183853300 183853340 41 CTACAAGCAGTTCTGGTGGCCGATAGCTTCGATCGCCGCTT CTACAAGCAGTTATGGTGGCCGATAGCTTCGATCGCCGCTT < 41bp 1 0.603743743519939 1 0.525813460350037 experiment 0.792512512960122 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183853320 chr3:183853312 nonsynonymous SNV 0.998 5 13 hm5C_associated_SNPs_41156 0 0 0 0 1 Ribosome 1 0.500231643921427 0.948373079299926 0.999536712157147 hm5C_site_40338 DeepMRMD:0.948373079299926;iRNA_m5C:0.999536712157147 40339 chr2 48026153 48026153 1 + A C UCEC 48026173 + 48026153 48026193 41 AAAATTCTGAATCCCAAGCCCACGTTAGTGGAGGTGGTGAT CAAATTCTGAATCCCAAGCCCACGTTAGTGGAGGTGGTGAT < 41bp 1 0.439438774887426 1 0.127356320619583 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MSH6 ENSG00000116062 CDS Human protein_coding chr2:48026173 chr2:48026153 nonsynonymous SNV 0.577 1 1 hm5C_associated_SNPs_41157 0 0 1 0 0 Nucleus 1 0.500231655827701 1 0.999536688344599 hm5C_site_40339 DeepMRMD:1;iRNA_m5C:0.999536688344599 40340 chr8 97316316 97316316 1 + C T UCEC 97316303 + 97316283 97316323 41 CACCGGGAAGATCAAGAGAGCTGTTCTGCAGTTCACTCCTG CACCGGGAAGATCAAGAGAGCTGTTCTGCAGTTTACTCCTG < 41bp 1 0.262884230203859 1 0.0424289107322693 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97316303 chr8:97316316 synonymous SNV . 0 34 hm5C_associated_SNPs_41159 0 0 1 0 2 Ribosome 1 0.500231644046113 1 0.999536711907773 hm5C_site_40340 DeepMRMD:1;iRNA_m5C:0.999536711907773 40341 chrX 70517706 70517706 1 + G A UCEC 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAAGAGCGCAGGCACCGTGAAGAAGAGATGCGGCG < 41bp 1 0.247964400271472 1 0.323331475257874 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517706 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_41160 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40341 DeepMRMD:1;iRNA_m5C:0.999536712157815 40342 chr3 44442813 44442813 1 + A G UCEC 44442795 + 44442775 44442815 41 TTATTCTCACCAAAGCTCAGCAGGCAAGAGAGAACATGAAA TTATTCTCACCAAAGCTCAGCAGGCAAGAGAGAACATGGAA < 41bp 1 0.335778107818318 1 0.128137797117233 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCAIM ENSG00000179152 CDS Human protein_coding chr3:44442795 chr3:44442813 nonsynonymous SNV 0.619 1 39 hm5C_associated_SNPs_41162 0 0 0 0 0 Cytosol 1 0.500231692550137 1 0.999536614899726 hm5C_site_40342 DeepMRMD:1;iRNA_m5C:0.999536614899726 40343 chr15 101169706 101169706 1 + C T UCEC 101169701 + 101169681 101169721 41 CTCTTCACTATGCAGCCATGCATGGCCGGGCCCGCATTGCA CTCTTCACTATGCAGCCATGCATGGTCGGGCCCGCATTGCA < 41bp 1 0.473410097092327 1 0.147948831319809 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASB7 ENSG00000183475 CDS Human protein_coding chr15:101169701 chr15:101169706 synonymous SNV . 0 26 hm5C_associated_SNPs_41164 0 0 1 0 1 Ribosome 1 0.500231644303652 1 0.999536711392696 hm5C_site_40343 DeepMRMD:1;iRNA_m5C:0.999536711392696 40344 chr9 33917139 33917139 1 + C T UCEC 33917126 + 33917106 33917146 41 GCCTTCCAATGACAACAGCTCAGATTTGCTTTACGACGACT GCCTTCCAATGACAACAGCTCAGATTTGCTTTATGACGACT < 41bp 1 0.239823870495533 1 0.118240296840668 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917126 chr9:33917139 synonymous SNV . 0 34 hm5C_associated_SNPs_41165 0 0 1 0 0 Cytosol 1 0.50023198492269 1 0.99953603015462 hm5C_site_40344 DeepMRMD:1;iRNA_m5C:0.99953603015462 40345 chr9 33917139 33917139 1 + C T UCEC 33917142 + 33917122 33917162 41 AGCTCAGATTTGCTTTACGACGACTTGTATGATGACGACAT AGCTCAGATTTGCTTTATGACGACTTGTATGATGACGACAT < 41bp 1 0.424840211830435 1 0.0512970685958862 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917142 chr9:33917139 synonymous SNV . 0 18 hm5C_associated_SNPs_41166 0 0 1 0 0 Cytosol 1 0.500231643915487 1 0.999536712169026 hm5C_site_40345 DeepMRMD:1;iRNA_m5C:0.999536712169026 40346 chr9 33917139 33917139 1 + C T UCEC 33917145 + 33917125 33917165 41 TCAGATTTGCTTTACGACGACTTGTATGATGACGACATTGA TCAGATTTGCTTTATGACGACTTGTATGATGACGACATTGA < 41bp 1 0.151192488807097 1 0.0497819781303406 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33917145 chr9:33917139 synonymous SNV . 0 15 hm5C_associated_SNPs_41167 0 0 1 0 0 Cytosol 1 0.500231947422086 1 0.999536105155828 hm5C_site_40346 DeepMRMD:1;iRNA_m5C:0.999536105155828 40347 chr13 52604954 52604954 1 + C T UCEC 52604967 + 52604947 52604987 41 TGAGAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAG TGAGAAGTGCAACATCCACGCAGCAGCTCATCAGGTACAAG < 41bp 1 0.629800555553162 1 0.259109646081924 experiment 0.740398888893675 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604967 chr13:52604954 nonsynonymous SNV 0.936 2 8 hm5C_associated_SNPs_41168 0 0 1 0 0 nucleoplasm 1 0.500211231035077 1 0.999577537929845 hm5C_site_40347 DeepMRMD:1;iRNA_m5C:0.999577537929845 40348 chr13 52604954 52604954 1 + C T UCEC 52604970 + 52604950 52604990 41 GAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAGTGC GAAGTGCAACATCCACGCAGCAGCTCATCAGGTACAAGTGC < 41bp 1 0.156062131849064 1 0.079890251159668 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604970 chr13:52604954 nonsynonymous SNV 0.936 2 5 hm5C_associated_SNPs_41169 0 0 1 0 0 nucleoplasm 1 0.500230672446834 1 0.999538655106332 hm5C_site_40348 DeepMRMD:1;iRNA_m5C:0.999538655106332 40349 chr3 126707713 126707713 1 + G A UCEC 126707697 + 126707677 126707717 41 CTGCGGGCCCACGTCACGGGCCCTGTGGAGGACAACGAGAA CTGCGGGCCCACGTCACGGGCCCTGTGGAGGACAACAAGAA < 41bp 1 0.0404040595993477 1 0.0779686570167542 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707697 chr3:126707713 nonsynonymous SNV 0.996 0 37 hm5C_associated_SNPs_41170 0 0 1 0 0 Ribosome 1 0.500231645303753 1 0.999536709392495 hm5C_site_40349 DeepMRMD:1;iRNA_m5C:0.999536709392495 40350 chr3 126707713 126707713 1 + G A UCEC 126707698 + 126707678 126707718 41 TGCGGGCCCACGTCACGGGCCCTGTGGAGGACAACGAGAAG TGCGGGCCCACGTCACGGGCCCTGTGGAGGACAACAAGAAG < 41bp 1 0.024546046249691 1 0.0743025839328766 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707698 chr3:126707713 nonsynonymous SNV 0.996 0 36 hm5C_associated_SNPs_41171 0 0 1 0 0 Ribosome 1 0.500231643920894 1 0.999536712158212 hm5C_site_40350 DeepMRMD:1;iRNA_m5C:0.999536712158212 40351 chr3 126707713 126707713 1 + G A UCEC 126707699 + 126707679 126707719 41 GCGGGCCCACGTCACGGGCCCTGTGGAGGACAACGAGAAGT GCGGGCCCACGTCACGGGCCCTGTGGAGGACAACAAGAAGT < 41bp 1 0.147217638288701 1 0.11366081237793 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126707699 chr3:126707713 nonsynonymous SNV 0.996 0 35 hm5C_associated_SNPs_41172 0 0 1 0 0 Ribosome 1 0.500231644077668 1 0.999536711844665 hm5C_site_40351 DeepMRMD:1;iRNA_m5C:0.999536711844665 40352 chr10 70726913 70726913 1 + A G UCEC 70726923 + 70726903 70726943 41 TGGATATGGGATTTGCTGATCAAGTGGAAGAGATTTTAAGT TGGATATGGGGTTTGCTGATCAAGTGGAAGAGATTTTAAGT < 41bp 1 0.515687118509964 1 0.542935132980347 experiment 0.968625762980072 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70726923 chr10:70726913 synonymous SNV . 0 11 hm5C_associated_SNPs_41173 0 0 1 0 1 Nucleus 1 0.500231643921093 0.914129734039306 0.999536712157814 hm5C_site_40352 DeepMRMD:0.914129734039306;iRNA_m5C:0.999536712157814 40353 chrX 64956690 64956690 1 + A C UCEC 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAGCGTGACATGGCAGAGAAGGAG < 41bp 1 0.499879035302556 1 0.626468777656555 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956690 nonsynonymous SNV 0.986 1 26 hm5C_associated_SNPs_41174 0 0 1 0 2 Ribosome 1 0.500231645180309 0.74706244468689 0.999536709639382 hm5C_site_40353 DeepMRMD:0.74706244468689;iRNA_m5C:0.999536709639382 40354 chrX 64956690 64956690 1 + A C UCEC 64956695 + 64956675 64956715 41 GAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAGAAGA GAAGAAGAAGCGTGACATGGCAGAGAAGGAGAAAGAGAAGA < 41bp 1 0.510201131269502 1 0.431357324123383 experiment 0.979597737460997 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956695 chrX:64956690 nonsynonymous SNV 0.986 1 16 hm5C_associated_SNPs_41175 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_40354 DeepMRMD:1;iRNA_m5C:0.999536712157815 40355 chr9 96411449 96411449 1 + G A UCEC 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GCACCAACCACAAGCGGGTCCTCAACGTCACCAACCTCGAG < 41bp 1 0.432441982094492 1 0.305744171142578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411449 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_41176 0 0 1 0 2 chromatin 1 0.500231288184041 1 0.999537423631919 hm5C_site_40355 DeepMRMD:1;iRNA_m5C:0.999537423631919 40356 chr6 142758649 142758649 1 + G T UCEC 142758630 + 142758610 142758650 41 ATGTTCAGAAACAGTGGCGGCAGCATCTCTGCTGTGGTAGA ATGTTCAGAAACAGTGGCGGCAGCATCTCTGCTGTGGTATA < 41bp 1 0.448924214830519 1 0.134108662605286 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142758630 chr6:142758649 nonsynonymous SNV 0.997 4 40 hm5C_associated_SNPs_41177 0 0 1 0 2 Ribosome 1 0.500231643876672 1 0.999536712246657 hm5C_site_40356 DeepMRMD:1;iRNA_m5C:0.999536712246657 40357 chr3 129197039 129197039 1 + C T UCEC 129197026 + 129197006 129197046 41 AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGCCAATCAC AGAAGTTTGAGTGCAACCTCCTGGTGGTGTGTGTCAATCAC < 41bp 1 0.679818197111644 1 0.22866553068161 experiment 0.640363605776713 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT122 ENSG00000163913 CDS Human protein_coding chr3:129197026 chr3:129197039 nonsynonymous SNV 0.510 2 34 hm5C_associated_SNPs_41178 0 0 1 4 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40357 DeepMRMD:1;iRNA_m5C:0.999536712157815 40358 chr11 64132927 64132927 1 + G A UCEC 64132923 + 64132903 64132943 41 GCAGCCCCCCACCTGGGGACCCCCGAATCTTTCAGGTGAGG GCAGCCCCCCACCTGGGGACCCCCAAATCTTTCAGGTGAGG < 41bp 1 0.182603381725824 1 0.15715691447258 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64132923 chr11:64132927 nonsynonymous SNV 0.912 2 25 hm5C_associated_SNPs_41179 0 0 1 0 1 chromatin 1 0.500231643921094 1 0.999536712157811 hm5C_site_40358 DeepMRMD:1;iRNA_m5C:0.999536712157811 40359 chr14 64990086 64990086 1 + C T UCEC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGAGCGTCAGTTGTGACTGCACAATGATATGCACAAAGGC < 41bp 1 0.635701691749866 1 0.684686541557312 experiment 0.728596616500269 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990086 stopgain 1.000 0 15 hm5C_associated_SNPs_41180 0 0 1 0 1 Cytosol 1 0.500449806342638 0.630626916885376 0.999100387314724 hm5C_site_40359 DeepMRMD:0.630626916885376;iRNA_m5C:0.999100387314724 40360 chr8 28574259 28574259 1 + T C UCEC 28574271 + 28574251 28574291 41 CGTTTATGTTACAGAAAATGCAGACATCGCCTGCCTTTACG CGTTTATGCTACAGAAAATGCAGACATCGCCTGCCTTTACG < 41bp 1 0.208235602603392 1 0.0370187759399414 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28574271 chr8:28574259 nonsynonymous SNV 0.998 3 9 hm5C_associated_SNPs_41181 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643922955 1 0.999536712154089 hm5C_site_40360 DeepMRMD:1;iRNA_m5C:0.999536712154089 40361 chr19 17836865 17836865 1 + C A UCEC 17836880 + 17836860 17836900 41 CCCTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCT CCCTTAGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCT < 41bp 1 0.541171096930927 1 0.538652062416077 experiment 0.917657806138146 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836880 chr19:17836865 nonsynonymous SNV 0.166 4 6 hm5C_associated_SNPs_41182 0 0 1 0 0 Cytosol 1 0.500231643921092 0.922695875167846 0.999536712157815 hm5C_site_40361 DeepMRMD:0.922695875167846;iRNA_m5C:0.999536712157815 40362 chr19 17836865 17836865 1 + C A UCEC 17836882 + 17836862 17836902 41 CTTCGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCTCA CTTAGAGCTGCTGGAGCCCCCGACCTCCGGGGGCTTCCTCA < 41bp 1 0.376946226562039 1 0.524387717247009 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836882 chr19:17836865 nonsynonymous SNV 0.166 4 4 hm5C_associated_SNPs_41183 0 0 1 0 0 Cytosol 1 0.500231643921092 0.951224565505982 0.999536712157815 hm5C_site_40362 DeepMRMD:0.951224565505982;iRNA_m5C:0.999536712157815 40363 chr19 17615403 17615403 1 + G A UCEC 17615397 + 17615377 17615417 41 GAGGCAGTCTACACTCGCATCTGCTCGGGCGCCTTCGCCCT GAGGCAGTCTACACTCGCATCTGCTCAGGCGCCTTCGCCCT < 41bp 1 0.308618227242982 1 0.0670866072177887 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17615397 chr19:17615403 synonymous SNV . 0 27 hm5C_associated_SNPs_41184 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164366085 1 0.9995367126783 hm5C_site_40363 DeepMRMD:1;iRNA_m5C:0.9995367126783 40364 chr22 32241035 32241035 1 + C T UCEC 32241034 + 32241014 32241054 41 TCCCTGAAGTTCTGGAGGACCCGCTTCCTGCTGCTGCCAGC TCCCTGAAGTTCTGGAGGACCTGCTTCCTGCTGCTGCCAGC < 41bp 1 0.517706310145812 1 0.108601093292236 experiment 0.964587379708375 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32241034 chr22:32241035 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_41185 0 0 0 0 0 chromatin 1 0.500231684493084 1 0.999536631013833 hm5C_site_40364 DeepMRMD:1;iRNA_m5C:0.999536631013833 40365 chr14 96553036 96553036 1 + C A UCEC 96553020 + 96553000 96553040 41 GCTATGGATTGCCATCATAGCTACGCTGGGGAACATCGTGG GCTATGGATTGCCATCATAGCTACGCTGGGGAACATAGTGG < 41bp 1 0.541140518473275 1 0.225440829992294 experiment 0.917718963053449 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C14orf132 ENSG00000227051 UTR5 Human protein_coding chr14:96553020 chr14:96553036 . . 0 37 hm5C_associated_SNPs_41186 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40365 DeepMRMD:1;iRNA_m5C:0.999536712157815 40366 chr1 162470001 162470001 1 + C A UCEC 162470019 + 162469999 162470039 41 CTCATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCAGGT CTAATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCAGGT < 41bp 1 0.378493635712755 1 0.129003942012787 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162470019 chr1:162470001 synonymous SNV . 0 3 hm5C_associated_SNPs_41187 0 0 1 0 1 chromatin 1 0.500231638507914 1 0.999536722984173 hm5C_site_40366 DeepMRMD:1;iRNA_m5C:0.999536722984173 40367 chr2 203157522 203157522 1 + G A UCEC 203157511 + 203157491 203157531 41 TTATACTAGGTGATTGAAATCTCTGAATATCGAACCCAGCT TTATACTAGGTGATTGAAATCTCTGAATATCAAACCCAGCT < 41bp 1 0.484275050868028 1 0.387015461921692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOP58 ENSG00000055044 CDS Human protein_coding chr2:203157511 chr2:203157522 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_41188 0 0 1 0 1 Nucleus 1 0.500231759957286 1 0.999536480085428 hm5C_site_40367 DeepMRMD:1;iRNA_m5C:0.999536480085428 40368 chrX 64887716 64887716 1 + A C UCEC 64887704 + 64887684 64887724 41 CAACTCCGCTGCCTTTGCCGCCACCATGCCCAAAACGGTGA CAACTCCGCTGCCTTTGCCGCCACCATGCCCACAACGGTGA < 41bp 1 0.309614157390452 1 0.0791624784469604 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MSN ENSG00000147065 CDS Human protein_coding chrX:64887704 chrX:64887716 nonsynonymous SNV 0.958 1 33 hm5C_associated_SNPs_41189 0 0 1 0 1 Ribosome 1 0.500231643919712 1 0.999536712160576 hm5C_site_40368 DeepMRMD:1;iRNA_m5C:0.999536712160576 40369 chrX 64887716 64887716 1 + A C UCEC 64887705 + 64887685 64887725 41 AACTCCGCTGCCTTTGCCGCCACCATGCCCAAAACGGTGAG AACTCCGCTGCCTTTGCCGCCACCATGCCCACAACGGTGAG < 41bp 1 0.611235698462535 1 0.24550998210907 experiment 0.77752860307493 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MSN ENSG00000147065 CDS Human protein_coding chrX:64887705 chrX:64887716 nonsynonymous SNV 0.958 1 32 hm5C_associated_SNPs_41190 0 0 1 0 1 Ribosome 1 0.500231643836005 1 0.999536712327989 hm5C_site_40369 DeepMRMD:1;iRNA_m5C:0.999536712327989 40370 chrX 101970351 101970351 1 + G A UCEC 101970348 + 101970328 101970368 41 TGTGGATGCTGAAACCTTTCCTGGCACCCAGGGTCAGAAAG TGTGGATGCTGAAACCTTTCCTGACACCCAGGGTCAGAAAG < 41bp 1 0.330662581157326 1 0.0973536968231201 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARMCX5-GPRASP2;GPRASP2 ENSG00000158301 CDS Human protein_coding chrX:101970348 chrX:101970351 nonsynonymous SNV 0.299 0 24 hm5C_associated_SNPs_41191 0 0 0 0 0 unknown 1 0.500231643929307 1 0.999536712141386 hm5C_site_40370 DeepMRMD:1;iRNA_m5C:0.999536712141386 40371 chr11 118344547 118344547 1 + G T UCEC 118344564 + 118344544 118344584 41 AGAGAAAAGGAAAAAGGGATCAGAAATTCAGAGTAGTTCTG AGATAAAAGGAAAAAGGGATCAGAAATTCAGAGTAGTTCTG < 41bp 1 0.321695955356648 1 0.562376856803894 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118344564 chr11:118344547 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_41192 0 0 1 0 0 Cytosol 1 0.500231644066759 0.875246286392212 0.999536711866483 hm5C_site_40371 DeepMRMD:0.875246286392212;iRNA_m5C:0.999536711866483 40372 chr5 137767202 137767202 1 + T G UCEC 137767210 + 137767190 137767230 41 TGACTCAGGAATTCAGGCATCTCTCTAACACTCATACAAAT TGACTCAGGAATGCAGGCATCTCTCTAACACTCATACAAAT < 41bp 1 0.0880579845871562 1 0.448443681001663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137767210 chr5:137767202 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_41193 0 0 1 0 2 Nucleus 1 0.500231605173109 1 0.999536789653782 hm5C_site_40372 DeepMRMD:1;iRNA_m5C:0.999536789653782 40373 chr11 75115798 75115798 1 + C T UCEC 75115815 + 75115795 75115835 41 CCACGTGAGCATTGTGGAACCCAAAGATGAGATACTGCCCA CCATGTGAGCATTGTGGAACCCAAAGATGAGATACTGCCCA < 41bp 1 0.65326667301936 1 0.395027816295624 experiment 0.69346665396128 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS3 ENSG00000149273 CDS Human protein_coding chr11:75115815 chr11:75115798 synonymous SNV . 0 4 hm5C_associated_SNPs_41194 0 0 1 0 1 Cytosol 1 0.500234741032074 1 0.999530517935853 hm5C_site_40373 DeepMRMD:1;iRNA_m5C:0.999530517935853 40374 chr21 45217968 45217968 1 + G T UCEC 45217948 + 45217928 45217968 41 GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAG GTGGTGAGCGTGGAGACGCGCTGTCCCAGAAGAGGTCTGAT < 41bp 1 0.167627687905403 1 0.284283876419067 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217948 chr21:45217968 nonsynonymous SNV 0.005 0 41 hm5C_associated_SNPs_41195 0 0 1 0 1 Ribosome 1 0.500231643437659 1 0.999536713124683 hm5C_site_40374 DeepMRMD:1;iRNA_m5C:0.999536713124683 40375 chr21 45217968 45217968 1 + G T UCEC 45217964 + 45217944 45217984 41 CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG CGCGCTGTCCCAGAAGAGGTCTGATAAGCCGCCCGCAGGTG < 41bp 1 0.499545053031942 1 0.0884797275066376 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217964 chr21:45217968 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_41196 0 0 1 0 1 Ribosome 1 0.500231643926851 1 0.999536712146298 hm5C_site_40375 DeepMRMD:1;iRNA_m5C:0.999536712146298 40376 chr9 137708900 137708900 1 + G A UCEC 137708906 + 137708886 137708926 41 TACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGG TACTGGTGAACCAGATCCATCGGGGCCTCCAGGAAAAAGGG < 41bp 1 0.324718644804978 1 0.849877417087555 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137708906 chr9:137708900 nonsynonymous SNV 0.337 4 15 hm5C_associated_SNPs_41197 0 0 0 0 1 Nucleus 1 0.500231643921092 0.30024516582489 0.999536712157815 hm5C_site_40376 DeepMRMD:0.30024516582489;iRNA_m5C:0.999536712157815 40377 chr5 140741610 140741610 1 + C T UCEC 140741612 + 140741592 140741632 41 TGCCTTGGGCGACAGGGACGCGGCCCGCCAGCGCCTGCTGG TGCCTTGGGCGACAGGGATGCGGCCCGCCAGCGCCTGCTGG < 41bp 1 0.39140180224251 1 0.668650150299072 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741612 chr5:140741610 synonymous SNV . 0 19 hm5C_associated_SNPs_41198 0 0 0 0 0 exosome 1 0.500231643921092 0.662699699401856 0.999536712157815 hm5C_site_40377 DeepMRMD:0.662699699401856;iRNA_m5C:0.999536712157815 40378 chr1 207498023 207498023 1 + G T UCEC 207498032 + 207498012 207498052 41 GTTACAGAAGAGAACCTTCTCTATCACCAAAACTAACTTGC GTTACAGAAGATAACCTTCTCTATCACCAAAACTAACTTGC < 41bp 1 0.187210854178782 1 0.132424980401993 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207498032 chr1:207498023 stopgain 0.001 0 12 hm5C_associated_SNPs_41199 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921445 1 0.99953671215711 hm5C_site_40378 DeepMRMD:1;iRNA_m5C:0.99953671215711 40379 chr16 1793378 1793378 1 + C T UCEC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACGTGTTCCCCCTGGCTGATGGCACGGTACG < 41bp 1 0.140027301006347 1 0.13862806558609 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793378 synonymous SNV . 0 30 hm5C_associated_SNPs_41200 0 0 1 0 3 chromatin 1 0.500231643920003 1 0.999536712159994 hm5C_site_40379 DeepMRMD:1;iRNA_m5C:0.999536712159994 40380 chr1 120286596 120286596 1 + C T UCEC 120286594 + 120286574 120286614 41 ACCTGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCT ACCTGGCACGTCATGGGCATCTTCTCCTTGCTGCCCAGCCT < 41bp 1 0.231642538327794 1 0.0360862016677856 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286594 chr1:120286596 nonsynonymous SNV 0.992 5 23 hm5C_associated_SNPs_41201 0 0 1 0 1 Ribosome 1 0.500231643921609 1 0.999536712156782 hm5C_site_40380 DeepMRMD:1;iRNA_m5C:0.999536712156782 40381 chr1 120286596 120286596 1 + C T UCEC 120286597 + 120286577 120286617 41 TGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGA TGGCACGTCATGGGCATCTTCTCCTTGCTGCCCAGCCTGGA < 41bp 1 0.634341921655117 1 0.542988777160645 experiment 0.731316156689766 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286597 chr1:120286596 nonsynonymous SNV 0.992 5 20 hm5C_associated_SNPs_41202 0 0 1 0 1 Ribosome 1 0.500231643921092 0.91402244567871 0.999536712157815 hm5C_site_40381 DeepMRMD:0.91402244567871;iRNA_m5C:0.999536712157815 40382 chr1 120286596 120286596 1 + C T UCEC 120286600 + 120286580 120286620 41 CACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGAAGC CACGTCATGGGCATCTTCTCCTTGCTGCCCAGCCTGGAAGC < 41bp 1 0.421981025533399 1 0.479301869869232 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286600 chr1:120286596 nonsynonymous SNV 0.992 5 17 hm5C_associated_SNPs_41203 0 0 1 0 1 Ribosome 1 0.500228957104176 1 0.999542085791649 hm5C_site_40382 DeepMRMD:1;iRNA_m5C:0.999542085791649 40383 chr2 11300668 11300668 1 + G A UCEC 11300656 + 11300636 11300676 41 CGCTGACCTACCTGGAGTACCCCATCCTCATCGCGCAAGGT CGCTGACCTACCTGGAGTACCCCATCCTCATCACGCAAGGT < 41bp 1 0.181091343774561 1 0.148583024740219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11300656 chr2:11300668 nonsynonymous SNV 0.992 0 33 hm5C_associated_SNPs_41204 0 0 1 0 2 Ribosome 1 0.500231643897299 1 0.999536712205402 hm5C_site_40383 DeepMRMD:1;iRNA_m5C:0.999536712205402 40384 chr1 32620221 32620221 1 + C T UCEC 32620232 + 32620212 32620252 41 GACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA GACAATTATTGAATGAAGAGCTATAAGAACAATGCTCTAAA < 41bp 1 0.220531921342532 1 0.2546306848526 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620232 chr1:32620221 stopgain 1.000 1 10 hm5C_associated_SNPs_41205 0 0 1 0 1 Cytosol 1 0.500231643800735 1 0.99953671239853 hm5C_site_40384 DeepMRMD:1;iRNA_m5C:0.99953671239853 40385 chr13 28752052 28752052 1 + A G UCEC 28752051 + 28752031 28752071 41 TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA TTTAATGACTTTGGTGCCCTCGACATCTCTCAGAGACGAAA < 41bp 1 0.621887477165753 1 0.214514434337616 experiment 0.756225045668495 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752051 chr13:28752052 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_41206 0 0 1 0 2 Ribosome 1 0.500231643919375 1 0.99953671216125 hm5C_site_40385 DeepMRMD:1;iRNA_m5C:0.99953671216125 40386 chr13 28752052 28752052 1 + A G UCEC 28752054 + 28752034 28752074 41 AATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGT AATGACTTTGGTGCCCTCGACATCTCTCAGAGACGAAAGGT < 41bp 1 0.101427174741096 1 0.238498419523239 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752054 chr13:28752052 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_41207 0 0 1 0 2 Ribosome 1 0.500231450556346 1 0.999537098887308 hm5C_site_40386 DeepMRMD:1;iRNA_m5C:0.999537098887308 40387 chr13 28752052 28752052 1 + A G UCEC 28752057 + 28752037 28752077 41 GACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGG GACTTTGGTGCCCTCGACATCTCTCAGAGACGAAAGGTAGG < 41bp 1 0.132508005256226 1 0.285690724849701 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752057 chr13:28752052 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_41208 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40387 DeepMRMD:1;iRNA_m5C:0.999536712157815 40388 chr13 28752052 28752052 1 + A G UCEC 28752059 + 28752039 28752079 41 CTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTG CTTTGGTGCCCTCGACATCTCTCAGAGACGAAAGGTAGGTG < 41bp 1 0.56045609509274 1 0.273006349802017 experiment 0.879087809814521 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752059 chr13:28752052 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_41209 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40388 DeepMRMD:1;iRNA_m5C:0.999536712157815 40389 chr13 28752052 28752052 1 + A G UCEC 28752061 + 28752041 28752081 41 TTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTGAA TTGGTGCCCTCGACATCTCTCAGAGACGAAAGGTAGGTGAA < 41bp 1 0.545872895446568 1 0.907371997833252 experiment 0.908254209106863 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752061 chr13:28752052 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_41210 0 0 1 0 2 Ribosome 1 0.500231643921092 0.185256004333496 0.999536712157815 hm5C_site_40389 DeepMRMD:0.185256004333496;iRNA_m5C:0.999536712157815 40390 chr15 41854876 41854876 1 + C T UCEC 41854884 + 41854864 41854904 41 AACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTT AACTACGAAGATTGGGGGACCCGCTCCCTCTCCATCTGTTT < 41bp 1 0.0551166556113555 1 0.0654378831386566 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854884 chr15:41854876 synonymous SNV . 0 13 hm5C_associated_SNPs_41211 0 0 0 0 1 Ribosome 1 0.500237158289157 1 0.999525683421686 hm5C_site_40390 DeepMRMD:1;iRNA_m5C:0.999525683421686 40391 chr15 41854876 41854876 1 + C T UCEC 41854885 + 41854865 41854905 41 ACTACGAAGATCGGGGGACCCGCTCCCTCTCCATCTGTTTT ACTACGAAGATTGGGGGACCCGCTCCCTCTCCATCTGTTTT < 41bp 1 0.130586943790461 1 0.0371924340724945 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41854885 chr15:41854876 synonymous SNV . 0 12 hm5C_associated_SNPs_41212 0 0 0 0 1 Ribosome 1 0.500231645285346 1 0.999536709429308 hm5C_site_40391 DeepMRMD:1;iRNA_m5C:0.999536709429308 40392 chr17 29325816 29325816 1 + C A UCEC 29325807 + 29325787 29325827 41 AGCTGTGAGAGGTTTTCTACCAGCCAGGTCTTATGTTCCCA AGCTGTGAGAGGTTTTCTACCAGCCAGGTATTATGTTCCCA < 41bp 1 0.548830128416669 1 0.485435575246811 experiment 0.902339743166662 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF135 ENSG00000181481 CDS Human protein_coding chr17:29325807 chr17:29325816 synonymous SNV . 0 30 hm5C_associated_SNPs_41213 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40392 DeepMRMD:1;iRNA_m5C:0.999536712157815 40393 chr19 35530600 35530600 1 + G A UCEC 35530583 + 35530563 35530603 41 TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAAT TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCAAAT < 41bp 1 0.63041849327637 1 0.577061057090759 experiment 0.739163013447261 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530583 chr19:35530600 nonsynonymous SNV 0.982 2 38 hm5C_associated_SNPs_41214 0 0 0 0 2 exosome 1 0.500231643891204 0.845877885818482 0.999536712217592 hm5C_site_40393 DeepMRMD:0.845877885818482;iRNA_m5C:0.999536712217592 40394 chr7 128119309 128119309 1 + C T UCEC 128119323 + 128119303 128119343 41 CGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT CGAATTTCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT < 41bp 1 0.113438931761569 1 0.23765555024147 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METTL2B ENSG00000165055 CDS Human protein_coding chr7:128119323 chr7:128119309 synonymous SNV . 0 7 hm5C_associated_SNPs_41215 0 0 1 0 1 Ribosome 1 0.500209677615761 1 0.999580644768478 hm5C_site_40394 DeepMRMD:1;iRNA_m5C:0.999580644768478 40395 chr7 91735001 91735001 1 + T G UCEC 91735017 + 91734997 91735037 41 AATTTTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT AATTGTTGGTTCGACGGTGGCATCGAGTCACAGGTTCTGTT < 41bp 1 0.147004977485662 1 0.295061677694321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91735017 chr7:91735001 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_41216 0 0 1 0 2 Nucleus 1 0.500231643939516 1 0.999536712120968 hm5C_site_40395 DeepMRMD:1;iRNA_m5C:0.999536712120968 40396 chr7 106826911 106826911 1 + T G UCEC 106826904 + 106826884 106826924 41 TGGCCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC TGGCCTTCAACTGTCTGGCACTGTTTTGTGAAAGGTAAAAC < 41bp 1 0.11963682460844 1 0.0267341434955597 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826904 chr7:106826911 nonsynonymous SNV 0.996 5 28 hm5C_associated_SNPs_41217 0 0 0 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_40396 DeepMRMD:1;iRNA_m5C:0.999536712157812 40397 chr20 35866812 35866812 1 + G A UCEC 35866808 + 35866788 35866828 41 CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAGAGCAGTAG CCTCTTTCCTTTGGCAGGATCGCTACAGAGCAGAGCAGTAG < 41bp 1 0.43656861209344 1 0.573533892631531 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35866808 chr20:35866812 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_41218 0 0 1 0 2 Ribosome 1 0.500231685765448 0.852932214736938 0.999536628469104 hm5C_site_40397 DeepMRMD:0.852932214736938;iRNA_m5C:0.999536628469104 40398 chr11 65156921 65156921 1 + C T UCEC 65156938 + 65156918 65156958 41 CACCGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC CACTGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC < 41bp 1 0.073121579562102 1 0.0793961882591248 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65156938 chr11:65156921 nonsynonymous SNV 0.984 2 4 hm5C_associated_SNPs_41219 0 0 0 0 2 Ribosome 1 0.500233819053921 1 0.999532361892158 hm5C_site_40398 DeepMRMD:1;iRNA_m5C:0.999532361892158 40399 chr5 139494059 139494059 1 + G A UCEC 139494074 + 139494054 139494094 41 CAAGAGCCGCCTTACTCTCTCCATGTCAGTGGCCGTGGAGT CAAGAACCGCCTTACTCTCTCCATGTCAGTGGCCGTGGAGT < 41bp 1 0.203928306586197 1 0.513371229171753 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PURA ENSG00000185129 CDS Human protein_coding chr5:139494074 chr5:139494059 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_41220 0 0 1 0 0 Ribosome 1 0.500231643006496 0.973257541656494 0.999536713987007 hm5C_site_40399 DeepMRMD:0.973257541656494;iRNA_m5C:0.999536713987007 40400 chr5 60839457 60839457 1 + T C UCEC 60839471 + 60839451 60839491 41 GCAGTGTGCCATGAAGGATCCACAGAACTGTGCCCTCTCTG GCAGTGCGCCATGAAGGATCCACAGAACTGTGCCCTCTCTG < 41bp 1 0.467556741889431 1 0.165378630161285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZSWIM6 ENSG00000130449 CDS Human protein_coding chr5:60839471 chr5:60839457 synonymous SNV . 0 7 hm5C_associated_SNPs_41221 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_40400 DeepMRMD:1;iRNA_m5C:0.999536712157816 40401 chr2 55191148 55191148 1 + C T UCEC 55191153 + 55191133 55191173 41 CAAGGTGAGCTTGGGCCATGCGGCCAGGTGTGCAGCCTACA CAAGGTGAGCTTGGGTCATGCGGCCAGGTGTGCAGCCTACA < 41bp 1 0.240404636829324 1 0.37557527422905 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML6 ENSG00000214595 CDS Human protein_coding chr2:55191153 chr2:55191148 synonymous SNV . 0 16 hm5C_associated_SNPs_41222 0 0 1 0 1 cytosol 1 0.500231643864947 1 0.999536712270105 hm5C_site_40401 DeepMRMD:1;iRNA_m5C:0.999536712270105 40402 chr7 27211528 27211528 1 + T G UCEC 27211542 - 27211522 27211562 41 GAAAACCGGATCCGGGAGCTCACAGCCAACTTTAATTTTTC GAAAACCGGATCCGGGAGCTCACAGCCAACTTTACTTTTTC < 41bp 1 0.248263047345625 1 0.190158933401108 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOXA10 ENSG00000253293 CDS Human protein_coding chr7:27211542 chr7:27211528 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_41223 0 0 1 0 0 exosome 1 0.500231646378372 1 0.999536707243255 hm5C_site_40402 DeepMRMD:1;iRNA_m5C:0.999536707243255 40403 chr10 120867621 120867621 1 + G A UCEC 120867616 + 120867596 120867636 41 CCCTTTGTCTTTGGTCAGTACAGAAGAACATGGTTTTATAT CCCTTTGTCTTTGGTCAGTACAGAAAAACATGGTTTTATAT < 41bp 1 0.601147920436092 1 0.434351027011871 experiment 0.797704159127816 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FAM45A ENSG00000119979 CDS Human protein_coding chr10:120867616 chr10:120867621 nonsynonymous SNV 0.999 1 26 hm5C_associated_SNPs_41225 0 0 0 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40403 DeepMRMD:1;iRNA_m5C:0.999536712157815 40404 chr5 159437859 159437859 1 + G T UCEC 159437849 + 159437829 159437869 41 AGAACTGGAAAAAAACATGTCGGATGAAGAGAAACAGGTAA AGAACTGGAAAAAAACATGTCGGATGAAGATAAACAGGTAA < 41bp 1 0.461834833335423 1 0.651363492012024 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTC1 ENSG00000113312 CDS Human protein_coding chr5:159437849 chr5:159437859 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_41226 0 0 1 0 1 Ribosome 1 0.500231643920234 0.697273015975952 0.999536712159531 hm5C_site_40404 DeepMRMD:0.697273015975952;iRNA_m5C:0.999536712159531 40405 chr3 30713581 30713581 1 + G T UCEC 30713566 + 30713546 30713586 41 AAGGACATCTTCTCAGACATCAATCTGAAGCATGAGAACAT AAGGACATCTTCTCAGACATCAATCTGAAGCATGATAACAT < 41bp 1 0.107121576806748 1 0.0437584221363068 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30713566 chr3:30713581 nonsynonymous SNV 0.998 2 36 hm5C_associated_SNPs_41227 0 0 0 0 0 Cytosol 1 0.500231643881409 1 0.999536712237181 hm5C_site_40405 DeepMRMD:1;iRNA_m5C:0.999536712237181 40406 chr12 65264454 65264454 1 + G A UCEC 65264472 + 65264452 65264492 41 TCGAAGTGAATACCATGCAGCTTTTAACAGTATGATGATGG TCAAAGTGAATACCATGCAGCTTTTAACAGTATGATGATGG < 41bp 1 0.0154936914757364 1 0.0269386172294617 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65264472 chr12:65264454 nonsynonymous SNV 0.116 1 3 hm5C_associated_SNPs_41228 0 0 0 0 1 nucleoplasm 1 0.500231643918363 1 0.999536712163274 hm5C_site_40406 DeepMRMD:1;iRNA_m5C:0.999536712163274 40407 chr12 19427774 19427774 1 + A C UCEC 19427793 + 19427773 19427813 41 CAGATCTTAGAGGTGGAAATCGCCCCAATACAGGGCCCTTA CCGATCTTAGAGGTGGAAATCGCCCCAATACAGGGCCCTTA < 41bp 1 0.471817620036438 1 0.403457909822464 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHA5 ENSG00000052126 CDS Human protein_coding chr12:19427793 chr12:19427774 synonymous SNV . 0 2 hm5C_associated_SNPs_41229 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40407 DeepMRMD:1;iRNA_m5C:0.999536712157815 40408 chr3 14697037 14697037 1 + A C UCEC 14697040 + 14697020 14697060 41 TAAAATTATTCTCCAGAAACCAAGTATCTGGAGCAAACAGA TAAAATTATTCTCCAGACACCAAGTATCTGGAGCAAACAGA < 41bp 1 0.234133637108791 1 0.0959219336509705 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14697040 chr3:14697037 nonsynonymous SNV 0.994 3 18 hm5C_associated_SNPs_41230 0 0 0 0 2 Cytosol 1 0.50023182408972 1 0.999536351820559 hm5C_site_40408 DeepMRMD:1;iRNA_m5C:0.999536351820559 40409 chr13 114203814 114203814 1 + G A UCEC 114203825 + 114203805 114203845 41 TGCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCA TGCAATCACAAGGTGTGTGCCCAGACCGGAGAGACGGTCCA < 41bp 1 0.63595637843256 1 0.115347623825073 experiment 0.728087243134881 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203825 chr13:114203814 synonymous SNV . 0 10 hm5C_associated_SNPs_41231 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40409 DeepMRMD:1;iRNA_m5C:0.999536712157815 40410 chr13 114203814 114203814 1 + G A UCEC 114203826 + 114203806 114203846 41 GCAATCACGAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG GCAATCACAAGGTGTGTGCCCAGACCGGAGAGACGGTCCAG < 41bp 1 0.559274431397206 1 0.133146345615387 experiment 0.881451137205589 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114203826 chr13:114203814 synonymous SNV . 0 9 hm5C_associated_SNPs_41232 0 0 0 0 1 Ribosome 1 0.50023164318758 1 0.99953671362484 hm5C_site_40410 DeepMRMD:1;iRNA_m5C:0.99953671362484 40411 chr6 26045878 26045878 1 + A C UCEC 26045888 + 26045868 26045908 41 AGGACTTCAAAACCGACCTGCGTTTCCAGAGCTCTGCGGTG AGGACTTCAACACCGACCTGCGTTTCCAGAGCTCTGCGGTG < 41bp 1 0.0576173027031881 1 0.0612886846065521 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H3C ENSG00000196532 CDS Human other chr6:26045888 chr6:26045878 nonsynonymous SNV 0.994 0 11 hm5C_associated_SNPs_41233 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40411 DeepMRMD:1;iRNA_m5C:0.999536712157815 40412 chr5 131930627 131930627 1 + G T UCEC 131930610 + 131930590 131930630 41 AAAATCATATAAATAATGAACTAAAAAGAAAGGAAGAGCAG AAAATCATATAAATAATGAACTAAAAAGAAAGGAAGATCAG < 41bp 1 0.387638305176511 1 0.263985514640808 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131930610 chr5:131930627 nonsynonymous SNV 0.988 1 38 hm5C_associated_SNPs_41234 0 0 1 0 1 Cytosol 1 0.500231643921086 1 0.999536712157829 hm5C_site_40412 DeepMRMD:1;iRNA_m5C:0.999536712157829 40413 chr6 160494395 160494395 1 + G A UCEC 160494408 + 160494388 160494428 41 TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT TTCGTGTACAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT < 41bp 1 0.320134813883482 1 0.848462104797363 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494408 chr6:160494395 nonsynonymous SNV 0.995 5 8 hm5C_associated_SNPs_41235 0 0 1 0 0 Endoplasmic reticulum 1 0.500231610754516 0.303075790405274 0.999536778490967 hm5C_site_40413 DeepMRMD:0.303075790405274;iRNA_m5C:0.999536778490967 40414 chr19 11123752 11123752 1 + G A UCEC 11123747 + 11123727 11123767 41 ATCACGTACCTCATGGAGCACAAACGCATCAATGGGCCCTT ATCACGTACCTCATGGAGCACAAACACATCAATGGGCCCTT < 41bp 1 0.13423110965099 1 0.192901700735092 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11123747 chr19:11123752 nonsynonymous SNV 0.997 4 26 hm5C_associated_SNPs_41236 0 0 1 0 1 Nucleus 1 0.500231643921079 1 0.999536712157842 hm5C_site_40414 DeepMRMD:1;iRNA_m5C:0.999536712157842 40415 chr16 24835005 24835005 1 + G A UCEC 24835001 + 24834981 24835021 41 CGGCACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCC CGGCACTTCACTCTGGGGGACCCCACATTATTCCACAAGCC < 41bp 1 0.183006465639322 1 0.0858815908432007 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835001 chr16:24835005 synonymous SNV . 0 25 hm5C_associated_SNPs_41237 0 0 1 0 0 Nucleus 1 0.500231643923275 1 0.999536712153449 hm5C_site_40415 DeepMRMD:1;iRNA_m5C:0.999536712153449 40416 chr16 24835005 24835005 1 + G A UCEC 24835002 + 24834982 24835022 41 GGCACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCCT GGCACTTCACTCTGGGGGACCCCACATTATTCCACAAGCCT < 41bp 1 0.0499604034256326 1 0.275382727384567 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835002 chr16:24835005 synonymous SNV . 0 24 hm5C_associated_SNPs_41238 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40416 DeepMRMD:1;iRNA_m5C:0.999536712157815 40417 chr16 24835005 24835005 1 + G A UCEC 24835003 + 24834983 24835023 41 GCACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCCTG GCACTTCACTCTGGGGGACCCCACATTATTCCACAAGCCTG < 41bp 1 0.436877600417595 1 0.598097503185272 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835003 chr16:24835005 synonymous SNV . 0 23 hm5C_associated_SNPs_41239 0 0 1 0 0 Nucleus 1 0.500231643599759 0.803804993629456 0.999536712800482 hm5C_site_40417 DeepMRMD:0.803804993629456;iRNA_m5C:0.999536712800482 40418 chr16 24835005 24835005 1 + G A UCEC 24835004 + 24834984 24835024 41 CACTTCACTCTGGGGGACCCCGCATTATTCCACAAGCCTGT CACTTCACTCTGGGGGACCCCACATTATTCCACAAGCCTGT < 41bp 1 0.337407125981591 1 0.589502036571503 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835004 chr16:24835005 synonymous SNV . 0 22 hm5C_associated_SNPs_41240 0 0 1 0 0 Nucleus 1 0.500231643921092 0.820995926856994 0.999536712157815 hm5C_site_40418 DeepMRMD:0.820995926856994;iRNA_m5C:0.999536712157815 40419 chr10 91177167 91177167 1 + C T UCEC 91177165 + 91177145 91177185 41 AAAAGGCCAAAATAAAGACGCCCTTGAGTGCTTGGAACAAG AAAAGGCCAAAATAAAGACGCCTTTGAGTGCTTGGAACAAG < 41bp 1 0.0275507361956581 1 0.0904234945774078 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFIT5 ENSG00000152778 CDS Human protein_coding chr10:91177165 chr10:91177167 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_41241 0 0 1 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_40419 DeepMRMD:1;iRNA_m5C:0.999536712157815 40420 chr1 31905819 31905819 1 + G A UCEC 31905832 + 31905812 31905852 41 AGTCTGCGCTCCTCAGACCACCGGCAGGTGAACAGCCTGAT AGTCTGCACTCCTCAGACCACCGGCAGGTGAACAGCCTGAT < 41bp 1 0.288477010565316 1 0.448188096284866 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31905832 chr1:31905819 nonsynonymous SNV 0.893 3 8 hm5C_associated_SNPs_41242 0 0 1 0 1 Endoplasmic reticulum 1 0.500231356745197 1 0.999537286509605 hm5C_site_40420 DeepMRMD:1;iRNA_m5C:0.999537286509605 40421 chr21 42629161 42629161 1 + C T UCEC 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCCACAAATGTGCTGGTGATCGGTGCCACGGTG < 41bp 1 0.528837126539526 1 0.191465586423874 experiment 0.942325746920949 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629161 nonsynonymous SNV 0.453 2 19 hm5C_associated_SNPs_41243 0 0 1 0 2 Ribosome 1 0.500231643972811 1 0.999536712054378 hm5C_site_40421 DeepMRMD:1;iRNA_m5C:0.999536712054378 Lung function (FVC) 40422 chr13 20567834 20567834 1 + C T UCEC 20567826 + 20567806 20567846 41 TGATGGCCAATTAGAAAATACTGACGGGCGAGATATGAACT TGATGGCCAATTAGAAAATACTGACGGGTGAGATATGAACT < 41bp 1 0.140016712015407 1 0.0785688161849976 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZMYM2 ENSG00000121741 CDS Human protein_coding chr13:20567826 chr13:20567834 stopgain 0.889 1 29 hm5C_associated_SNPs_41244 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40422 DeepMRMD:1;iRNA_m5C:0.999536712157815 40423 chr8 30332299 30332299 1 + G A UCEC 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT AGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT < 41bp 1 0.0656647440709686 1 0.0508638620376587 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332299 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_41245 0 0 1 0 2 Nucleus 1 0.50023164392109 1 0.99953671215782 hm5C_site_40423 DeepMRMD:1;iRNA_m5C:0.99953671215782 40424 chr1 12061532 12061532 1 + C T UCEC 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCTGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.281834930464635 1 0.0981212854385376 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061532 synonymous SNV . 0 9 hm5C_associated_SNPs_41246 4 0 1 0 2 Ribosome 1 0.500231643921046 1 0.999536712157908 hm5C_site_40424 DeepMRMD:1;iRNA_m5C:0.999536712157908 Charcot-Marie-Tooth, Type 2 Charcot-Marie-Tooth, Type 2 40425 chr7 56119543 56119543 1 + T C UCEC 56119525 + 56119505 56119545 41 ACTCAGCATCGTTTCCTTTTCCTCCGCTGGAGCAGCTATGG ACTCAGCATCGTTTCCTTTTCCTCCGCTGGAGCAGCTACGG < 41bp 1 0.347840673418762 1 0.402285933494568 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56119525 chr7:56119543 nonsynonymous SNV 0.739 4 39 hm5C_associated_SNPs_41247 0 0 1 0 0 Ribosome 1 0.500231643922197 1 0.999536712155607 hm5C_site_40425 DeepMRMD:1;iRNA_m5C:0.999536712155607 40426 chr7 56119543 56119543 1 + T C UCEC 56119526 + 56119506 56119546 41 CTCAGCATCGTTTCCTTTTCCTCCGCTGGAGCAGCTATGGC CTCAGCATCGTTTCCTTTTCCTCCGCTGGAGCAGCTACGGC < 41bp 1 0.687782595782061 1 0.763629555702209 experiment 0.624434808435878 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56119526 chr7:56119543 nonsynonymous SNV 0.739 4 38 hm5C_associated_SNPs_41248 0 0 1 0 0 Ribosome 1 0.500231643771166 0.472740888595582 0.999536712457668 hm5C_site_40426 DeepMRMD:0.472740888595582;iRNA_m5C:0.999536712457668 40427 chr7 56119543 56119543 1 + T C UCEC 56119528 + 56119508 56119548 41 CAGCATCGTTTCCTTTTCCTCCGCTGGAGCAGCTATGGCGG CAGCATCGTTTCCTTTTCCTCCGCTGGAGCAGCTACGGCGG < 41bp 1 0.614955253876764 1 0.250871062278748 experiment 0.770089492246472 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56119528 chr7:56119543 nonsynonymous SNV 0.739 4 36 hm5C_associated_SNPs_41249 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40427 DeepMRMD:1;iRNA_m5C:0.999536712157815 40428 chr7 56119543 56119543 1 + T C UCEC 56119529 + 56119509 56119549 41 AGCATCGTTTCCTTTTCCTCCGCTGGAGCAGCTATGGCGGC AGCATCGTTTCCTTTTCCTCCGCTGGAGCAGCTACGGCGGC < 41bp 1 0.586475235692021 1 0.763270497322083 experiment 0.827049528615958 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56119529 chr7:56119543 nonsynonymous SNV 0.739 4 35 hm5C_associated_SNPs_41250 0 0 1 0 0 Ribosome 1 0.500231643922216 0.473459005355834 0.999536712155568 hm5C_site_40428 DeepMRMD:0.473459005355834;iRNA_m5C:0.999536712155568 40429 chr7 56119543 56119543 1 + T C UCEC 56119537 + 56119517 56119557 41 TTCCTTTTCCTCCGCTGGAGCAGCTATGGCGGCGGTGAAGA TTCCTTTTCCTCCGCTGGAGCAGCTACGGCGGCGGTGAAGA < 41bp 1 0.536884468968477 1 0.377932459115982 experiment 0.926231062063046 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CCT6A ENSG00000146731 CDS Human protein_coding chr7:56119537 chr7:56119543 nonsynonymous SNV 0.739 4 27 hm5C_associated_SNPs_41251 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40429 DeepMRMD:1;iRNA_m5C:0.999536712157815 40430 chr6 42975949 42975949 1 + G A UCEC 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACAAGACGGAGCATCACAACGGGATTGCTGAG < 41bp 1 0.236469920474474 1 0.0574996769428253 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975949 nonsynonymous SNV 0.992 4 12 hm5C_associated_SNPs_41252 0 0 1 0 2 Ribosome 1 0.500231682608882 1 0.999536634782236 hm5C_site_40430 DeepMRMD:1;iRNA_m5C:0.999536634782236 40431 chr4 1955177 1955177 1 + G A UCEC 1955190 + 1955170 1955210 41 GAGAGCCGAGGTTTCCGCTGCCCCCTCCACAGCTGTGTGAG GAGAGCCAAGGTTTCCGCTGCCCCCTCCACAGCTGTGTGAG < 41bp 1 0.0727804842651651 1 0.135983973741531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NSD2 ENSG00000109685 CDS Human protein_coding chr4:1955190 chr4:1955177 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_41253 0 0 1 0 1 Nucleus 1 0.500231653492355 1 0.999536693015291 hm5C_site_40431 DeepMRMD:1;iRNA_m5C:0.999536693015291 40432 chr12 4459024 4459024 1 + G T UCEC 4459031 + 4459011 4459051 41 CAAATTTTGCAAAGATATGACGGTAAAGTATGACTCAAGAC CAAATTTTGCAAATATATGACGGTAAAGTATGACTCAAGAC < 41bp 1 0.427500255311257 1 0.386393964290619 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TIGAR ENSG00000078237 CDS Human protein_coding chr12:4459031 chr12:4459024 nonsynonymous SNV 0.954 2 14 hm5C_associated_SNPs_41254 0 0 1 0 1 Nucleus 1 0.500231588735386 1 0.999536822529228 hm5C_site_40432 DeepMRMD:1;iRNA_m5C:0.999536822529228 40433 chr11 61404913 61404913 1 + G T UCEC 61404895 + 61404875 61404915 41 ATCGACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGAC ATCGACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGATAC < 41bp 1 0.261202753472797 1 0.0727493762969971 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404895 chr11:61404913 . . 0 39 hm5C_associated_SNPs_41255 0 0 1 0 0 unknown 1 0.500235729870506 1 0.999528540258988 hm5C_site_40433 DeepMRMD:1;iRNA_m5C:0.999528540258988 40434 chr1 198231716 198231716 1 + A G UCEC 198231736 + 198231716 198231756 41 AATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG GATGGATGCCAAAGCACGTGCTGATTGCATCAAAGAAATAG < 41bp 1 0.189965701308607 1 0.0756292343139648 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231736 chr1:198231716 synonymous SNV . 0 1 hm5C_associated_SNPs_41256 0 0 1 0 2 Nucleus 1 0.500231643935692 1 0.999536712128617 hm5C_site_40434 DeepMRMD:1;iRNA_m5C:0.999536712128617 40435 chr19 39125694 39125694 1 + C A UCEC 39125675 + 39125655 39125695 41 GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCT GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATAT < 41bp 1 0.252698963872881 1 0.430244505405426 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125675 chr19:39125694 synonymous SNV . 0 40 hm5C_associated_SNPs_41257 0 0 1 0 2 Cytosol 1 0.500231631350341 1 0.999536737299318 hm5C_site_40435 DeepMRMD:1;iRNA_m5C:0.999536737299318 40436 chr19 39125694 39125694 1 + C A UCEC 39125679 + 39125659 39125699 41 AAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCTTCAT AAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATATTCAT < 41bp 1 0.566069348541996 1 0.413999289274216 experiment 0.867861302916008 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125679 chr19:39125694 synonymous SNV . 0 36 hm5C_associated_SNPs_41258 0 0 1 0 2 Cytosol 1 0.500231634799063 1 0.999536730401875 hm5C_site_40436 DeepMRMD:1;iRNA_m5C:0.999536730401875 40437 chr17 7592187 7592187 1 + C A UCEC 7592180 + 7592160 7592200 41 AGGAGCTACGGGAGGGGGACCCAGTTTCTCTCTCCACTCCC AGGAGCTACGGGAGGGGGACCCAGTTTATCTCTCCACTCCC < 41bp 1 0.383599079047897 1 0.203872978687286 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7592180 chr17:7592187 nonsynonymous SNV 0.008 1 28 hm5C_associated_SNPs_41259 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40437 DeepMRMD:1;iRNA_m5C:0.999536712157815 40438 chr20 60878633 60878633 1 + C A UCEC 60878643 + 60878623 60878663 41 GGATGACGACCTCAGGCGCGCTCTTTCCAAGCCTGGTGCCA GGATGACGACATCAGGCGCGCTCTTTCCAAGCCTGGTGCCA < 41bp 1 0.160183232048182 1 0.0168150663375854 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60878643 chr20:60878633 synonymous SNV . 0 11 hm5C_associated_SNPs_41260 0 0 1 0 1 Ribosome 1 0.50023164391997 1 0.99953671216006 hm5C_site_40438 DeepMRMD:1;iRNA_m5C:0.99953671216006 40439 chr14 50088664 50088664 1 + A T UCEC 50088661 + 50088641 50088681 41 TTCGGCCATTATAGAGAGGCCAAATTCTCCCAGACCAAACA TTCGGCCATTATAGAGAGGCCAATTTCTCCCAGACCAAACA < 41bp 1 0.135085219404061 1 0.0543536841869354 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MGAT2 ENSG00000168282 CDS Human protein_coding chr14:50088661 chr14:50088664 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_41261 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157812 hm5C_site_40439 DeepMRMD:1;iRNA_m5C:0.999536712157812 40440 chr17 43220922 43220922 1 + G A UCEC 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TCGTCGTCCAGTGGCTCTTCCGAATGTTTCAGACCCAAAAG < 41bp 1 0.421707819983605 1 0.795809686183929 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220922 nonsynonymous SNV 0.996 2 31 hm5C_associated_SNPs_41262 0 0 1 0 0 Cytosol 1 0.500231643921181 0.408380627632142 0.999536712157638 hm5C_site_40440 DeepMRMD:0.408380627632142;iRNA_m5C:0.999536712157638 40441 chr15 100215656 100215656 1 + T C UCEC 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGCC < 41bp 1 0.285660800535492 1 0.514192759990692 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215656 synonymous SNV . 0 40 hm5C_associated_SNPs_41263 0 0 1 0 2 Endoplasmic reticulum 1 0.500216689639985 0.971614480018616 0.99956662072003 hm5C_site_40441 DeepMRMD:0.971614480018616;iRNA_m5C:0.99956662072003 40442 chr17 33324836 33324836 1 + C T UCEC 33324843 + 33324823 33324863 41 CTCAGAAATGAAGCGAGTCACAGTAAGTGAAGACCCTATGC CTCAGAAATGAAGTGAGTCACAGTAAGTGAAGACCCTATGC < 41bp 1 0.65121564654917 1 0.244450300931931 experiment 0.697568706901659 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33324843 chr17:33324836 stopgain 0.998 0 14 hm5C_associated_SNPs_41264 0 0 1 0 2 Cytosol 1 0.500231670113959 1 0.999536659772081 hm5C_site_40442 DeepMRMD:1;iRNA_m5C:0.999536659772081 40443 chr19 30936078 30936078 1 + T G UCEC 30936065 + 30936045 30936085 41 CTCATGGCCAGGGGCATGGCCATGGAACATGGCTTCTTGTC CTCATGGCCAGGGGCATGGCCATGGAACATGGCGTCTTGTC < 41bp 1 0.338470603602678 1 0.699397265911102 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936065 chr19:30936078 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_41265 0 0 1 0 0 exosome 1 0.500231623784045 0.601205468177796 0.99953675243191 hm5C_site_40443 DeepMRMD:0.601205468177796;iRNA_m5C:0.99953675243191 40444 chr6 44219798 44219798 1 + G A UCEC 44219794 + 44219774 44219814 41 GAGCGAGTGCGGAAACGGGGCTTCGAGGTGGTATATATGAC GAGCGAGTGCGGAAACGGGGCTTCAAGGTGGTATATATGAC < 41bp 1 0.352119918086531 1 0.280385553836823 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219794 chr6:44219798 nonsynonymous SNV 0.986 3 25 hm5C_associated_SNPs_41266 0 0 1 0 1 Nucleus 1 0.500231643919223 1 0.999536712161555 hm5C_site_40444 DeepMRMD:1;iRNA_m5C:0.999536712161555 40445 chr6 44219798 44219798 1 + G A UCEC 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCAAGGTGGTATATATGACCGAGCCCATTGACGAGTACT < 41bp 1 0.330260970136454 1 0.177519381046295 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219798 nonsynonymous SNV 0.986 3 5 hm5C_associated_SNPs_41267 0 0 1 0 1 Nucleus 1 0.500231743633862 1 0.999536512732276 hm5C_site_40445 DeepMRMD:1;iRNA_m5C:0.999536512732276 40446 chr12 104336865 104336865 1 + C A UCEC 104336862 + 104336842 104336882 41 AATTTTGTAGGCTGAATCTTCTCCATTTGTTGAGCGACTTC AATTTTGTAGGCTGAATCTTCTCAATTTGTTGAGCGACTTC < 41bp 1 0.683520820726733 1 0.668353915214539 experiment 0.632958358546533 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104336862 chr12:104336865 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_41268 0 0 1 0 1 Nucleus 1 0.500227494850063 0.663292169570922 0.999545010299875 hm5C_site_40446 DeepMRMD:0.663292169570922;iRNA_m5C:0.999545010299875 40447 chr17 17039737 17039737 1 + C T UCEC 17039743 + 17039723 17039763 41 CTGCCAGCTCCCTGCGGGAACCTGGGCTAGAGAGCAAAGAA CTGCCAGCTCCCTGTGGGAACCTGGGCTAGAGAGCAAAGAA < 41bp 1 0.181612811203069 1 0.311505675315857 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17039743 chr17:17039737 nonsynonymous SNV 0.312 2 15 hm5C_associated_SNPs_41269 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40447 DeepMRMD:1;iRNA_m5C:0.999536712157815 40448 chr17 17039737 17039737 1 + C T UCEC 17039744 + 17039724 17039764 41 TGCCAGCTCCCTGCGGGAACCTGGGCTAGAGAGCAAAGAAG TGCCAGCTCCCTGTGGGAACCTGGGCTAGAGAGCAAAGAAG < 41bp 1 0.695316572762331 1 0.494005113840103 experiment 0.609366854475337 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17039744 chr17:17039737 nonsynonymous SNV 0.312 2 14 hm5C_associated_SNPs_41270 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40448 DeepMRMD:1;iRNA_m5C:0.999536712157815 40449 chr7 142460772 142460772 1 + C A UCEC 142460757 + 142460737 142460777 41 GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGG GTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCATGGGG < 41bp 1 0.255097818464522 1 0.503800570964813 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460757 chr7:142460772 synonymous SNV . 0 36 hm5C_associated_SNPs_41272 0 0 0 0 0 Cytosol 1 0.500231691927475 0.992398858070374 0.99953661614505 hm5C_site_40449 DeepMRMD:0.992398858070374;iRNA_m5C:0.99953661614505 40450 chr7 142460772 142460772 1 + C A UCEC 142460758 + 142460738 142460778 41 TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGT TGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCATGGGGT < 41bp 1 0.416060394999121 1 0.234130263328552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460758 chr7:142460772 synonymous SNV . 0 35 hm5C_associated_SNPs_41273 0 0 0 0 0 Cytosol 1 0.500317194778249 1 0.999365610443503 hm5C_site_40450 DeepMRMD:1;iRNA_m5C:0.999365610443503 40451 chr7 142460772 142460772 1 + C A UCEC 142460769 + 142460749 142460789 41 GGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGC GGACAGCTCCAAGGAGTTGTCTCATGGGGTGATGGCTGTGC < 41bp 1 0.547500179300723 1 0.637305021286011 experiment 0.904999641398554 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460769 chr7:142460772 synonymous SNV . 0 24 hm5C_associated_SNPs_41274 0 0 0 0 0 Cytosol 1 0.500231643921092 0.725389957427978 0.999536712157816 hm5C_site_40451 DeepMRMD:0.725389957427978;iRNA_m5C:0.999536712157816 40452 chr7 142460772 142460772 1 + C A UCEC 142460771 + 142460751 142460791 41 ACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCC ACAGCTCCAAGGAGTTGTCTCATGGGGTGATGGCTGTGCCC < 41bp 1 0.635277741720397 1 0.83678138256073 experiment 0.729444516559206 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460771 chr7:142460772 synonymous SNV . 0 22 hm5C_associated_SNPs_41275 0 0 0 0 0 Cytosol 1 0.500231643874015 0.32643723487854 0.99953671225197 hm5C_site_40452 DeepMRMD:0.32643723487854;iRNA_m5C:0.99953671225197 40453 chr7 142460772 142460772 1 + C A UCEC 142460784 + 142460764 142460804 41 GTTGTCTCCTGGGGTGATGGCTGTGCCCAGAAGAACAAGCC GTTGTCTCATGGGGTGATGGCTGTGCCCAGAAGAACAAGCC < 41bp 1 0.359711833242202 1 0.331012368202209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460784 chr7:142460772 synonymous SNV . 0 9 hm5C_associated_SNPs_41276 0 0 0 0 0 Cytosol 1 0.500231638174933 1 0.999536723650134 hm5C_site_40453 DeepMRMD:1;iRNA_m5C:0.999536723650134 40454 chr13 50589751 50589751 1 + A C UCEC 50589747 + 50589727 50589767 41 GCATGTTAGATGGCAGAGACCAAGAATTCAAGATGGTTGGT GCATGTTAGATGGCAGAGACCAAGCATTCAAGATGGTTGGT < 41bp 1 0.623997884537197 1 0.353767991065979 experiment 0.752004230925606 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KCNRG ENSG00000198553 CDS Human protein_coding chr13:50589747 chr13:50589751 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_41277 0 0 1 0 0 nucleus 1 0.500103547640368 1 0.999792904719264 hm5C_site_40454 DeepMRMD:1;iRNA_m5C:0.999792904719264 40455 chr21 44152047 44152047 1 + C T UCEC 44152044 + 44152024 44152064 41 AGGGCTGCTACCAGGAAGGCCAGCGCATCCCTCCAGGTAAC AGGGCTGCTACCAGGAAGGCCAGTGCATCCCTCCAGGTAAC < 41bp 1 0.525394800485858 1 0.479937523603439 experiment 0.949210399028285 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDE9A ENSG00000160191 CDS Human protein_coding chr21:44152044 chr21:44152047 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_41278 0 0 0 0 1 Nucleus 1 0.500231664777707 1 0.999536670444587 hm5C_site_40455 DeepMRMD:1;iRNA_m5C:0.999536670444587 40456 chrX 102632726 102632726 1 + C T UCEC 102632708 + 102632688 102632728 41 TGCGTATCCTTATGGGGGAGCTCTCTAATCACCATGACCAT TGCGTATCCTTATGGGGGAGCTCTCTAATCACCATGACTAT < 41bp 1 0.108854990034292 1 0.0420005917549133 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632708 chrX:102632726 nonsynonymous SNV 0.999 4 39 hm5C_associated_SNPs_41280 0 0 1 0 0 Cytosol 1 0.500231656209929 1 0.999536687580143 hm5C_site_40456 DeepMRMD:1;iRNA_m5C:0.999536687580143 40457 chrX 102632726 102632726 1 + C T UCEC 102632712 + 102632692 102632732 41 TATCCTTATGGGGGAGCTCTCTAATCACCATGACCATCATG TATCCTTATGGGGGAGCTCTCTAATCACCATGACTATCATG < 41bp 1 0.441321058361203 1 0.143809586763382 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632712 chrX:102632726 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_41282 0 0 1 0 0 Cytosol 1 0.500232109389299 1 0.999535781221403 hm5C_site_40457 DeepMRMD:1;iRNA_m5C:0.999535781221403 40458 chrX 102632726 102632726 1 + C T UCEC 102632725 + 102632705 102632745 41 GAGCTCTCTAATCACCATGACCATCATGATGAATTTTGCCT GAGCTCTCTAATCACCATGACTATCATGATGAATTTTGCCT < 41bp 1 0.0618453701783138 1 0.0263440310955048 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632725 chrX:102632726 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_41283 0 0 1 0 0 Cytosol 1 0.500231293169726 1 0.999537413660549 hm5C_site_40458 DeepMRMD:1;iRNA_m5C:0.999537413660549 40459 chrX 102632726 102632726 1 + C T UCEC 102632743 + 102632723 102632763 41 GACCATCATGATGAATTTTGCCTTATGCCTTGACTCCTGCC GACTATCATGATGAATTTTGCCTTATGCCTTGACTCCTGCC < 41bp 1 0.149126485025972 1 0.0602016448974609 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632743 chrX:102632726 nonsynonymous SNV 0.999 4 4 hm5C_associated_SNPs_41284 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_40459 DeepMRMD:1;iRNA_m5C:0.999536712157812 40460 chrX 102632726 102632726 1 + C T UCEC 102632744 + 102632724 102632764 41 ACCATCATGATGAATTTTGCCTTATGCCTTGACTCCTGCCA ACTATCATGATGAATTTTGCCTTATGCCTTGACTCCTGCCA < 41bp 1 0.271761581698582 1 0.0539169013500214 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632744 chrX:102632726 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_41285 0 0 1 0 0 Cytosol 1 0.500231627302948 1 0.999536745394103 hm5C_site_40460 DeepMRMD:1;iRNA_m5C:0.999536745394103 40461 chr17 80680737 80680737 1 + T C UCEC 80680754 + 80680734 80680774 41 TGGTGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG TGGCGACGTGCTGTGGATACCTCCCCCAGGTGAGTGCACGG < 41bp 1 0.451246361859002 1 0.781522035598755 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680754 chr17:80680737 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_41286 0 0 1 0 2 Ribosome 1 0.500231643921037 0.43695592880249 0.999536712157925 hm5C_site_40461 DeepMRMD:0.43695592880249;iRNA_m5C:0.999536712157925 40462 chr17 16344593 16344593 1 + G A UCEC 16344577 + 16344557 16344597 41 AAAATAGCTGGAATTACCGGCAGATTGTGTAGTGGTGAACC AAAATAGCTGGAATTACCGGCAGATTGTGTAGTGGTAAACC < 41bp 1 0.106967240400266 1 0.157600909471512 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD65 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16344577 chr17:16344593 . . 0 37 hm5C_associated_SNPs_41287 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_40462 DeepMRMD:1;iRNA_m5C:0.999536712157815 40463 chr17 16344593 16344593 1 + G A UCEC 16344596 + 16344576 16344616 41 GCAGATTGTGTAGTGGTGAACCTATGGTTTTCTGAAGATAT GCAGATTGTGTAGTGGTAAACCTATGGTTTTCTGAAGATAT < 41bp 1 0.0674834314831908 1 0.103003859519958 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD65 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16344596 chr17:16344593 . . 0 18 hm5C_associated_SNPs_41288 0 0 1 1 0 unknown 1 0.500231643921074 1 0.999536712157852 hm5C_site_40463 DeepMRMD:1;iRNA_m5C:0.999536712157852 40464 chr6 139487483 139487483 1 + G A UCEC 139487463 + 139487443 139487483 41 GATCTGCAGCTTCGGTAGGCCGGTGGACCTGGAGAAGGACG GATCTGCAGCTTCGGTAGGCCGGTGGACCTGGAGAAGGACA < 41bp 1 0.543336704769794 1 0.482868522405624 experiment 0.913326590460411 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECA ENSG00000112406 CDS Human protein_coding chr6:139487463 chr6:139487483 nonsynonymous SNV 0.996 3 41 hm5C_associated_SNPs_41289 0 0 1 0 1 Ribosome 1 0.500231620794251 1 0.999536758411498 hm5C_site_40464 DeepMRMD:1;iRNA_m5C:0.999536758411498 40465 chr2 105959565 105959565 1 + A G UCEC 105959573 + 105959553 105959593 41 AACAGAACCATGACTTAACGCATAGGAAAAGTCCTTCAGGC AACAGAACCATGGCTTAACGCATAGGAAAAGTCCTTCAGGC < 41bp 1 0.552239191623012 1 0.709652364253998 experiment 0.895521616753977 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105959573 chr2:105959565 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_41290 0 0 1 0 1 Ribosome 1 0.500231646060952 0.580695271492004 0.999536707878097 hm5C_site_40465 DeepMRMD:0.580695271492004;iRNA_m5C:0.999536707878097 40466 chr2 200824532 200824532 1 + C T UCEC 200824514 + 200824494 200824534 41 AGAAAAGGTTACTTCACTACCTGACAACCATAAAAATGCCC AGAAAAGGTTACTTCACTACCTGACAACCATAAAAATGTCC < 41bp 1 0.181702443748579 1 0.129139274358749 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824514 chr2:200824532 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_41291 0 0 1 0 2 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_40466 DeepMRMD:1;iRNA_m5C:0.999536712157815 40467 chr8 1806227 1806227 1 + C T UCEC 1806226 + 1806206 1806246 41 CCAGAAGCGGACAGACAGGCCCCATCCGCCCCTGAGACAGG CCAGAAGCGGACAGACAGGCCTCATCCGCCCCTGAGACAGG < 41bp 1 0.247111093727706 1 0.17174556851387 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1806226 chr8:1806227 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_41292 0 0 1 0 1 Nucleus 1 0.500231643921087 1 0.999536712157825 hm5C_site_40467 DeepMRMD:1;iRNA_m5C:0.999536712157825 40468 chrX 41089023 41089023 1 + T C UCEC 41089020 + 41089000 41089040 41 CTTGCAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA CTTGCAAAAGCTTGTGAACTCTGCCCAGAGGAGGTAAAAAA < 41bp 1 0.214906025332107 1 0.250676155090332 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089020 chrX:41089023 synonymous SNV . 0 24 hm5C_associated_SNPs_41293 0 0 1 0 2 Nucleus 1 0.50023164416198 1 0.999536711676039 hm5C_site_40468 DeepMRMD:1;iRNA_m5C:0.999536711676039 40469 chrX 41089023 41089023 1 + T C UCEC 41089025 + 41089005 41089045 41 AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGCCA AAAAGCTTGTGAACTCTGCCCAGAGGAGGTAAAAAAAGCCA < 41bp 1 0.216120056819434 1 0.667450547218323 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089025 chrX:41089023 synonymous SNV . 0 19 hm5C_associated_SNPs_41294 0 0 1 0 2 Nucleus 1 0.500231648878944 0.665098905563354 0.999536702242112 hm5C_site_40469 DeepMRMD:0.665098905563354;iRNA_m5C:0.999536702242112 40470 chrX 41089023 41089023 1 + T C UCEC 41089043 + 41089023 41089063 41 TCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG CCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG < 41bp 1 0.051657044568292 1 0.201132655143738 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089043 chrX:41089023 synonymous SNV . 0 1 hm5C_associated_SNPs_41295 0 0 1 0 2 Nucleus 1 0.500231643921137 1 0.999536712157726 hm5C_site_40470 DeepMRMD:1;iRNA_m5C:0.999536712157726 40471 chr5 149754347 149754347 1 + G A UCEC 149754335 + 149754315 149754355 41 GAGGAGGACTCGCAGAGCAGCAGCGAGGAATCGGACAGTGA GAGGAGGACTCGCAGAGCAGCAGCGAGGAATCAGACAGTGA < 41bp 1 0.526136720380274 1 0.416235089302063 experiment 0.947726559239451 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754335 chr5:149754347 synonymous SNV . 0 33 hm5C_associated_SNPs_41296 0 0 1 0 1 Nucleus 1 0.50023158473277 1 0.999536830534461 hm5C_site_40471 DeepMRMD:1;iRNA_m5C:0.999536830534461 40472 chr11 44129598 44129598 1 + A G UCEC 44129604 + 44129584 44129624 41 ATCTATGCTCTGAAAAAGTACGTGGATGACTTTGGCGTCTC ATCTATGCTCTGAAGAAGTACGTGGATGACTTTGGCGTCTC < 41bp 1 0.519688784317556 1 0.531013786792755 experiment 0.960622431364888 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129604 chr11:44129598 synonymous SNV . 0 15 hm5C_associated_SNPs_41297 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643919074 0.93797242641449 0.999536712161853 hm5C_site_40472 DeepMRMD:0.93797242641449;iRNA_m5C:0.999536712161853 40473 chr5 142264926 142264926 1 + A G UCEC 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGGATTT < 41bp 1 0.121049583421354 1 0.367004811763763 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264926 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_41298 0 0 1 0 2 Nucleus 1 0.500231643932841 1 0.999536712134318 hm5C_site_40473 DeepMRMD:1;iRNA_m5C:0.999536712134318 40474 chr15 66777517 66777517 1 + A C UCEC 66777521 + 66777501 66777541 41 GCCAAGGACCCCCGGGAGGCCCCTTAGCTGTGAGTAGCCTG GCCAAGGACCCCCGGGCGGCCCCTTAGCTGTGAGTAGCCTG < 41bp 1 0.148872945229317 1 0.0901764631271362 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66777521 chr15:66777517 synonymous SNV . 0 17 hm5C_associated_SNPs_41299 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_40474 DeepMRMD:1;iRNA_m5C:0.999536712157815 40475 chr1 78399026 78399026 1 + G A UCEC 78399025 + 78399005 78399045 41 CTCTCAAGAATTTCTTACACCGGGAAAACTGGAAATTAATT CTCTCAAGAATTTCTTACACCAGGAAAACTGGAAATTAATT < 41bp 1 0.619557433159357 1 0.698949098587036 experiment 0.760885133681285 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEXN ENSG00000162614 CDS Human protein_coding chr1:78399025 chr1:78399026 synonymous SNV . 0 22 hm5C_associated_SNPs_41300 0 0 0 0 1 nucleoplasm 1 0.500231663845356 0.602101802825928 0.999536672309288 hm5C_site_40475 DeepMRMD:0.602101802825928;iRNA_m5C:0.999536672309288 40476 chr17 60769593 60769593 1 + G A UCEC 60769607 + 60769587 60769627 41 GGCAGCGCTTCCAGAGAACCCAGCGGCCCTGGTGGTGGTGC GGCAGCACTTCCAGAGAACCCAGCGGCCCTGGTGGTGGTGC < 41bp 1 0.679598241752021 1 0.750279426574707 experiment 0.640803516495957 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60769607 chr17:60769593 synonymous SNV . 0 7 hm5C_associated_SNPs_41301 0 0 0 0 1 Cytosol 1 0.500231632118115 0.499441146850586 0.99953673576377 hm5C_site_40476 DeepMRMD:0.499441146850586;iRNA_m5C:0.99953673576377 40477 chrX 129535956 129535956 1 + G A UCEC 129535973 + 129535953 129535993 41 TGCGCTGCCTTTCCCGGGCGCTGATTCCTGAGTGCTGAGCG TGCACTGCCTTTCCCGGGCGCTGATTCCTGAGTGCTGAGCG < 41bp 1 0.438686195820725 1 0.0304941833019257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBMX2 ENSG00000134597 UTR5 Human protein_coding chrX:129535973 chrX:129535956 . . 0 4 hm5C_associated_SNPs_41302 0 0 1 0 1 exosome 1 0.500231643913149 1 0.999536712173702 hm5C_site_40477 DeepMRMD:1;iRNA_m5C:0.999536712173702 40478 chr19 14512316 14512316 1 + G T UCEC 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAAGATATCATGATGATCCTGGCCAAGAGCCTGCCTAA < 41bp 1 0.340390762032707 1 0.0581580102443695 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512316 nonsynonymous SNV 0.001 3 17 hm5C_associated_SNPs_41303 0 0 1 0 1 Cytosol 1 0.500231643921112 1 0.999536712157776 hm5C_site_40478 DeepMRMD:1;iRNA_m5C:0.999536712157776 40479 chr19 24010404 24010404 1 + G C UCEC 24010418 + 24010398 24010438 41 TGCGCTGTGTAACACAGATTCTCCTCTGCGCTATGTGGACA TGCGCTCTGTAACACAGATTCTCCTCTGCGCTATGTGGACA < 41bp 1 0.499291899287806 1 0.108181685209274 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010418 chr19:24010404 synonymous SNV . 0 7 hm5C_associated_SNPs_41304 0 0 0 0 0 Cytosol 1 0.500231643886857 1 0.999536712226287 hm5C_site_40479 DeepMRMD:1;iRNA_m5C:0.999536712226287 40480 chr19 24010404 24010404 1 + G C UCEC 24010423 + 24010403 24010443 41 TGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCC TCTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCC < 41bp 1 0.554814526054783 1 0.0861296057701111 experiment 0.890370947890433 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010423 chr19:24010404 synonymous SNV . 0 2 hm5C_associated_SNPs_41305 0 0 0 0 0 Cytosol 1 0.500231071013028 1 0.999537857973944 hm5C_site_40480 DeepMRMD:1;iRNA_m5C:0.999537857973944 40481 chr1 44069407 44069407 1 + G A UCEC 44069418 + 44069398 44069438 41 CGGGCCGACGAGGCGCGGCCCAACACCATAGATTTCGGCAA CGGGCCGACAAGGCGCGGCCCAACACCATAGATTTCGGCAA < 41bp 1 0.348887387511923 1 0.0584088563919067 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44069418 chr1:44069407 nonsynonymous SNV 0.566 2 10 hm5C_associated_SNPs_41306 0 0 1 0 0 Ribosome 1 0.500231643967671 1 0.999536712064657 hm5C_site_40481 DeepMRMD:1;iRNA_m5C:0.999536712064657 40482 chr3 13672274 13672274 1 + G A UCEC 13672281 + 13672261 13672301 41 CAGTGCTACTGCCGCCAGGGCTACCAGCTGGCTGAGGATGG CAGTGCTACTGCCACCAGGGCTACCAGCTGGCTGAGGATGG < 41bp 1 0.0770211578181478 1 0.0463477373123169 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672281 chr3:13672274 nonsynonymous SNV 0.987 5 14 hm5C_associated_SNPs_41307 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40482 DeepMRMD:1;iRNA_m5C:0.999536712157815 40483 chr3 13672274 13672274 1 + G A UCEC 13672285 + 13672265 13672305 41 GCTACTGCCGCCAGGGCTACCAGCTGGCTGAGGATGGGCAC GCTACTGCCACCAGGGCTACCAGCTGGCTGAGGATGGGCAC < 41bp 1 0.562670352722818 1 0.461203932762146 experiment 0.874659294554365 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672285 chr3:13672274 nonsynonymous SNV 0.987 5 10 hm5C_associated_SNPs_41308 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40483 DeepMRMD:1;iRNA_m5C:0.999536712157815 40484 chr17 30293214 30293214 1 + T C UCEC 30293195 + 30293175 30293215 41 TCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAAATG TCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAAACG < 41bp 1 0.501891665237136 1 0.189388364553452 experiment 0.996216669525727 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30293195 chr17:30293214 synonymous SNV . 0 40 hm5C_associated_SNPs_41309 0 0 1 0 2 Ribosome 1 0.500231643556258 1 0.999536712887483 hm5C_site_40484 DeepMRMD:1;iRNA_m5C:0.999536712887483 40485 chr13 28197121 28197121 1 + G A UCEC 28197130 + 28197110 28197150 41 TTGTATTGCACGAGGAAGACCATACCCTAGGAAATTCTCTA TTGTATTGCACAAGGAAGACCATACCCTAGGAAATTCTCTA < 41bp 1 0.0284554348984222 1 0.188082575798035 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1D ENSG00000186184 CDS Human protein_coding chr13:28197130 chr13:28197121 nonsynonymous SNV 0.999 1 12 hm5C_associated_SNPs_41310 0 0 1 0 0 Ribosome 1 0.500231642674884 1 0.999536714650232 hm5C_site_40485 DeepMRMD:1;iRNA_m5C:0.999536714650232 40486 chr19 50339133 50339133 1 + A G UCEC 50339146 + 50339126 50339166 41 CTCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAAC CTCCTGGGCCCATCCTTCGGCCCCAGAACCCTGGGGCCAAC < 41bp 1 0.434045634102374 1 0.0663125514984131 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339146 chr19:50339133 synonymous SNV . 0 8 hm5C_associated_SNPs_41311 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157817 hm5C_site_40486 DeepMRMD:1;iRNA_m5C:0.999536712157817 40487 chr19 50339133 50339133 1 + A G UCEC 50339147 + 50339127 50339167 41 TCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACC TCCTGGGCCCATCCTTCGGCCCCAGAACCCTGGGGCCAACC < 41bp 1 0.139019374416659 1 0.0320164263248444 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339147 chr19:50339133 synonymous SNV . 0 7 hm5C_associated_SNPs_41312 0 0 1 0 1 chromatin 1 0.500231643921072 1 0.999536712157857 hm5C_site_40487 DeepMRMD:1;iRNA_m5C:0.999536712157857 40488 chr19 50339133 50339133 1 + A G UCEC 50339148 + 50339128 50339168 41 CCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCC CCTGGGCCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCC < 41bp 1 0.418497596157918 1 0.0585717856884003 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339148 chr19:50339133 synonymous SNV . 0 6 hm5C_associated_SNPs_41313 0 0 1 0 1 chromatin 1 0.500231643921088 1 0.999536712157824 hm5C_site_40488 DeepMRMD:1;iRNA_m5C:0.999536712157824 40489 chr19 50339133 50339133 1 + A G UCEC 50339149 + 50339129 50339169 41 CTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCCT CTGGGCCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCCT < 41bp 1 0.455824702025484 1 0.0963809490203857 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339149 chr19:50339133 synonymous SNV . 0 5 hm5C_associated_SNPs_41314 0 0 1 0 1 chromatin 1 0.500231643887908 1 0.999536712224183 hm5C_site_40489 DeepMRMD:1;iRNA_m5C:0.999536712224183 40490 chr8 56866444 56866444 1 + C T UCEC 56866453 + 56866433 56866473 41 TTAGTCCCAAGCCACAGAAGCCATGGGATAAAGATGCCTGG TTAGTCCCAAGTCACAGAAGCCATGGGATAAAGATGCCTGG < 41bp 1 0.0966223545187516 1 0.379556357860565 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LYN ENSG00000254087 CDS Human protein_coding chr8:56866453 chr8:56866444 nonsynonymous SNV 0.983 2 12 hm5C_associated_SNPs_41315 0 0 1 0 2 Cytosol 1 0.500231643917906 1 0.999536712164188 hm5C_site_40490 DeepMRMD:1;iRNA_m5C:0.999536712164188 40491 chr3 52326914 52326914 1 + C T UCEC 52326903 + 52326883 52326923 41 CGCTGGGGCCGATAGATGTGCTGTTTTTGAGCGGTGGCACC CGCTGGGGCCGATAGATGTGCTGTTTTTGAGTGGTGGCACC < 41bp 1 0.321688886693841 1 0.307662963867188 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52326903 chr3:52326914 synonymous SNV . 0 32 hm5C_associated_SNPs_41316 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40491 DeepMRMD:1;iRNA_m5C:0.999536712157815 40492 chr22 42032182 42032182 1 + C A UCEC 42032200 + 42032180 42032220 41 TTCTATGGTACCGAGAAAGACAAAAATTCAGTGAATTTTAA TTATATGGTACCGAGAAAGACAAAAATTCAGTGAATTTTAA < 41bp 1 0.496292805420167 1 0.343502163887024 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42032200 chr22:42032182 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_41317 0 0 1 0 1 Cytosol 1 0.500231643921179 1 0.999536712157642 hm5C_site_40492 DeepMRMD:1;iRNA_m5C:0.999536712157642 40493 chr11 35684876 35684876 1 + G A UCEC 35684862 + 35684842 35684882 41 CCACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGG CCACGGCTCCCAGGCCTGGACCCCGCCAGCTGACAGAGAGG < 41bp 1 0.36373452286085 1 0.397938549518585 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684862 chr11:35684876 nonsynonymous SNV 0.001 1 35 hm5C_associated_SNPs_41318 0 0 1 0 0 Ribosome 1 0.500231643921062 1 0.999536712157876 hm5C_site_40493 DeepMRMD:1;iRNA_m5C:0.999536712157876 Body fat distribution (trunk fat ratio) 40494 chr11 35684876 35684876 1 + G A UCEC 35684863 + 35684843 35684883 41 CACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGGG CACGGCTCCCAGGCCTGGACCCCGCCAGCTGACAGAGAGGG < 41bp 1 0.187142412554877 1 0.242300361394882 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684863 chr11:35684876 nonsynonymous SNV 0.001 1 34 hm5C_associated_SNPs_41319 0 0 1 0 0 Ribosome 1 0.500231632120863 1 0.999536735758274 hm5C_site_40494 DeepMRMD:1;iRNA_m5C:0.999536735758274 40495 chr11 35684876 35684876 1 + G A UCEC 35684864 + 35684844 35684884 41 ACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGGGG ACGGCTCCCAGGCCTGGACCCCGCCAGCTGACAGAGAGGGG < 41bp 1 0.247431781463205 1 0.435609817504883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684864 chr11:35684876 nonsynonymous SNV 0.001 1 33 hm5C_associated_SNPs_41320 0 0 1 0 0 Ribosome 1 0.500231631191077 1 0.999536737617845 hm5C_site_40495 DeepMRMD:1;iRNA_m5C:0.999536737617845 40496 chr11 134014868 134014868 1 + A G UCEC 134014879 + 134014859 134014899 41 TTTCCACTTAAACTCTGAAACAGGCACTTTGGTAAGATCTC TTTCCACTTGAACTCTGAAACAGGCACTTTGGTAAGATCTC < 41bp 1 0.415468779690164 1 0.712385892868042 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control JAM3 ENSG00000166086 CDS Human protein_coding chr11:134014879 chr11:134014868 synonymous SNV . 0 10 hm5C_associated_SNPs_41322 0 0 1 0 1 nucleoplasm 1 0.500231574663235 0.575228214263916 0.99953685067353 hm5C_site_40496 DeepMRMD:0.575228214263916;iRNA_m5C:0.99953685067353 40497 chr4 15589548 15589548 1 + C A UCEC 15589537 + 15589517 15589557 41 AAGGCCTGGCTGTTGATGGGCAATGCTATTCCTGAGGTAAG AAGGCCTGGCTGTTGATGGGCAATGCTATTCATGAGGTAAG < 41bp 1 0.124567773127149 1 0.127511203289032 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15589537 chr4:15589548 nonsynonymous SNV 0.997 4 32 hm5C_associated_SNPs_41323 0 0 0 2 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40497 DeepMRMD:1;iRNA_m5C:0.999536712157815 40498 chr2 241514992 241514992 1 + C T UCEC 241514997 + 241514977 241515017 41 TCCTGAGCTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC TCCTGAGCTTCTTCCTGGAGCTGAAGGAGCAGAGCGTGGAC < 41bp 1 0.60996772462541 1 0.271427154541016 experiment 0.78006455074918 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514997 chr2:241514992 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_41324 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_40498 DeepMRMD:1;iRNA_m5C:0.999536712157816 40499 chr13 52604988 52604988 1 + T C UCEC 52604970 + 52604950 52604990 41 GAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAGTGC GAAGCGCAACATCCACGCAGCAGCTCATCAGGTACAAGCGC < 41bp 1 0.182568703847924 1 0.0965416133403778 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UTP14C ENSG00000253797 CDS Human protein_coding chr13:52604970 chr13:52604988 nonsynonymous SNV 0.182 0 39 hm5C_associated_SNPs_41325 0 0 1 1 0 nucleoplasm 1 0.50023090049047 1 0.999538199019061 hm5C_site_40499 DeepMRMD:1;iRNA_m5C:0.999538199019061 40500 chr6 18213975 18213975 1 + G A UCEC 18213957 + 18213937 18213977 41 TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCAAG < 41bp 1 0.415325964297911 1 0.201159179210663 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213957 chr6:18213975 nonsynonymous SNV 0.962 4 39 hm5C_associated_SNPs_41326 0 0 1 0 2 Cytosol 1 0.500231643921086 1 0.999536712157828 hm5C_site_40500 DeepMRMD:1;iRNA_m5C:0.999536712157828 40501 chr6 18213975 18213975 1 + G A UCEC 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCAAGGG < 41bp 1 0.468719448527127 1 0.464764595031738 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213975 nonsynonymous SNV 0.962 4 37 hm5C_associated_SNPs_41327 0 0 1 0 2 Cytosol 1 0.500231643920388 1 0.999536712159224 hm5C_site_40501 DeepMRMD:1;iRNA_m5C:0.999536712159224 40502 chr19 13010538 13010538 1 + G T UCEC 13010519 + 13010499 13010539 41 ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAAGA ATTTCCCTTCTGAAGTCGTTCAGATGTGTTCCTTAAAAATA < 41bp 1 0.37374012565064 1 0.246356666088104 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13010519 chr19:13010538 nonsynonymous SNV . 0 40 hm5C_associated_SNPs_41328 0 0 1 0 1 Ribosome 1 0.500231644575108 1 0.999536710849784 hm5C_site_40502 DeepMRMD:1;iRNA_m5C:0.999536710849784 40503 chr19 36370321 36370321 1 + G A UCEC 36370340 + 36370320 36370360 41 CGCTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC CACTTCCTGGAGGAACGACCCTGACCCGGCCCCCTTCACCC < 41bp 1 0.411141401091536 1 0.0544670820236206 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370340 chr19:36370321 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_41330 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921088 1 0.999536712157825 hm5C_site_40503 DeepMRMD:1;iRNA_m5C:0.999536712157825 Mean corpuscular volume 40504 chr1 224553684 224553684 1 + A G UCEC 224553676 + 224553656 224553696 41 CTTCTCAACTTACCTGTTGCCACTTGGAATATATATCGGTG CTTCTCAACTTACCTGTTGCCACTTGGAGTATATATCGGTG < 41bp 1 0.30708328000775 1 0.347925245761871 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNIH4 ENSG00000143771 CDS Human protein_coding chr1:224553676 chr1:224553684 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_41331 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40504 DeepMRMD:1;iRNA_m5C:0.999536712157815 40505 chr7 142459695 142459695 1 + G A UCEC 142459680 + 142459660 142459700 41 AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAG AAGTCCTGGAGGGGAATGAGCAGTTCATCAATGCAACCAAG < 41bp 1 0.502815563172036 1 0.31520938873291 experiment 0.994368873655928 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459680 chr7:142459695 nonsynonymous SNV 0.055 1 36 hm5C_associated_SNPs_41332 0 0 0 0 1 Cytosol 1 0.500231643921359 1 0.999536712157283 hm5C_site_40505 DeepMRMD:1;iRNA_m5C:0.999536712157283 40506 chr7 142459695 142459695 1 + G A UCEC 142459685 + 142459665 142459705 41 CTGGAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCAT CTGGAGGGGAATGAGCAGTTCATCAATGCAACCAAGATCAT < 41bp 1 0.689708601770046 1 0.0453372001647949 experiment 0.620582796459908 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459685 chr7:142459695 nonsynonymous SNV 0.055 1 31 hm5C_associated_SNPs_41333 0 0 0 0 1 Cytosol 1 0.500231644008214 1 0.999536711983571 hm5C_site_40506 DeepMRMD:1;iRNA_m5C:0.999536711983571 40507 chr7 142459695 142459695 1 + G A UCEC 142459688 + 142459668 142459708 41 GAGGGGAATGAGCAGTTCATCAATGCAGCCAAGATCATCCG GAGGGGAATGAGCAGTTCATCAATGCAACCAAGATCATCCG < 41bp 1 0.6383356520338 1 0.389768987894058 experiment 0.723328695932399 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459688 chr7:142459695 nonsynonymous SNV 0.055 1 28 hm5C_associated_SNPs_41334 0 0 0 0 1 Cytosol 1 0.500231634309742 1 0.999536731380515 hm5C_site_40507 DeepMRMD:1;iRNA_m5C:0.999536731380515 40508 chr7 142459695 142459695 1 + G A UCEC 142459693 + 142459673 142459713 41 GAATGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACC GAATGAGCAGTTCATCAATGCAACCAAGATCATCCGCCACC < 41bp 1 0.440554136058219 1 0.0219292938709259 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459693 chr7:142459695 nonsynonymous SNV 0.055 1 23 hm5C_associated_SNPs_41335 0 0 0 0 1 Cytosol 1 0.500231644355061 1 0.999536711289877 hm5C_site_40508 DeepMRMD:1;iRNA_m5C:0.999536711289877 40509 chr7 142459695 142459695 1 + G A UCEC 142459696 + 142459676 142459716 41 TGAGCAGTTCATCAATGCAGCCAAGATCATCCGCCACCCCC TGAGCAGTTCATCAATGCAACCAAGATCATCCGCCACCCCC < 41bp 1 0.395867101683263 1 0.326244652271271 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459696 chr7:142459695 nonsynonymous SNV 0.055 1 20 hm5C_associated_SNPs_41336 0 0 0 0 1 Cytosol 1 0.500231642094122 1 0.999536715811757 hm5C_site_40509 DeepMRMD:1;iRNA_m5C:0.999536715811757 40510 chr7 142459695 142459695 1 + G A UCEC 142459703 + 142459683 142459723 41 TTCATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGA TTCATCAATGCAACCAAGATCATCCGCCACCCCCAATACGA < 41bp 1 0.270421810240793 1 0.0917937457561493 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459703 chr7:142459695 nonsynonymous SNV 0.055 1 13 hm5C_associated_SNPs_41337 0 0 0 0 1 Cytosol 1 0.500228338059906 1 0.999543323880188 hm5C_site_40510 DeepMRMD:1;iRNA_m5C:0.999543323880188 40511 chr7 142459695 142459695 1 + G A UCEC 142459706 + 142459686 142459726 41 ATCAATGCAGCCAAGATCATCCGCCACCCCCAATACGACAG ATCAATGCAACCAAGATCATCCGCCACCCCCAATACGACAG < 41bp 1 0.272409948478442 1 0.414751648902893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459706 chr7:142459695 nonsynonymous SNV 0.055 1 10 hm5C_associated_SNPs_41338 0 0 0 0 1 Cytosol 1 0.500231641919273 1 0.999536716161454 hm5C_site_40511 DeepMRMD:1;iRNA_m5C:0.999536716161454 40512 chr7 142459695 142459695 1 + G A UCEC 142459709 + 142459689 142459729 41 AATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAA AATGCAACCAAGATCATCCGCCACCCCCAATACGACAGGAA < 41bp 1 0.118610936648808 1 0.075216144323349 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459709 chr7:142459695 nonsynonymous SNV 0.055 1 7 hm5C_associated_SNPs_41340 0 0 0 0 1 Cytosol 1 0.500231550869937 1 0.999536898260126 hm5C_site_40512 DeepMRMD:1;iRNA_m5C:0.999536898260126 40513 chr7 142459695 142459695 1 + G A UCEC 142459710 + 142459690 142459730 41 ATGCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAG ATGCAACCAAGATCATCCGCCACCCCCAATACGACAGGAAG < 41bp 1 0.185508965015172 1 0.181185811758041 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459710 chr7:142459695 nonsynonymous SNV 0.055 1 6 hm5C_associated_SNPs_41341 0 0 0 0 1 Cytosol 1 0.500231646664415 1 0.99953670667117 hm5C_site_40513 DeepMRMD:1;iRNA_m5C:0.99953670667117 40514 chr7 142459695 142459695 1 + G A UCEC 142459712 + 142459692 142459732 41 GCAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC GCAACCAAGATCATCCGCCACCCCCAATACGACAGGAAGAC < 41bp 1 0.151321589351007 1 0.109357297420502 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459712 chr7:142459695 nonsynonymous SNV 0.055 1 4 hm5C_associated_SNPs_41342 0 0 0 0 1 Cytosol 1 0.500231646663362 1 0.999536706673276 hm5C_site_40514 DeepMRMD:1;iRNA_m5C:0.999536706673276 40515 chr7 142459695 142459695 1 + G A UCEC 142459713 + 142459693 142459733 41 CAGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT CAACCAAGATCATCCGCCACCCCCAATACGACAGGAAGACT < 41bp 1 0.482397061611595 1 0.538319647312164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459713 chr7:142459695 nonsynonymous SNV 0.055 1 3 hm5C_associated_SNPs_41343 0 0 0 0 1 Cytosol 1 0.500231643921732 0.923360705375672 0.999536712156536 hm5C_site_40515 DeepMRMD:0.923360705375672;iRNA_m5C:0.999536712156536 40516 chr7 142459695 142459695 1 + G A UCEC 142459714 + 142459694 142459734 41 AGCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC AACCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTC < 41bp 1 0.473689232466566 1 0.169595569372177 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459714 chr7:142459695 nonsynonymous SNV 0.055 1 2 hm5C_associated_SNPs_41344 0 0 0 0 1 Cytosol 1 0.500231643932157 1 0.999536712135686 hm5C_site_40516 DeepMRMD:1;iRNA_m5C:0.999536712135686 40517 chr7 142459695 142459695 1 + G A UCEC 142459715 + 142459695 142459735 41 GCCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT ACCAAGATCATCCGCCACCCCCAATACGACAGGAAGACTCT < 41bp 1 0.242414796473632 1 0.163082927465439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459715 chr7:142459695 nonsynonymous SNV 0.055 1 1 hm5C_associated_SNPs_41345 0 0 0 0 1 Cytosol 1 0.500231643940512 1 0.999536712118975 hm5C_site_40517 DeepMRMD:1;iRNA_m5C:0.999536712118975 40518 chr11 45827602 45827602 1 + A G UCEC 45827586 + 45827566 45827606 41 ACCCCCATCTTCGTCACCTTCTACCAGTGCCTGGTGACCAC ACCCCCATCTTCGTCACCTTCTACCAGTGCCTGGTGGCCAC < 41bp 1 0.435524448064592 1 0.179722726345062 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC35C1 ENSG00000181830 CDS Human protein_coding chr11:45827586 chr11:45827602 nonsynonymous SNV 0.966 1 37 hm5C_associated_SNPs_41346 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40518 DeepMRMD:1;iRNA_m5C:0.999536712157815 40519 chr3 41266527 41266527 1 + G A UCEC 41266530 + 41266510 41266550 41 TTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATGC TTAGATGAGGGCATGCAAATCCCATCTACACAGTTTGATGC < 41bp 1 0.378067541350482 1 0.25400584936142 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41266530 chr3:41266527 synonymous SNV . 0 18 hm5C_associated_SNPs_41347 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40519 DeepMRMD:1;iRNA_m5C:0.999536712157815 40520 chr3 183855521 183855521 1 + G A UCEC 183855522 + 183855502 183855542 41 GATGCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA GATGCCAAGGCTTTGGTGCACTCTGACTTTCTTCTGGTGTA < 41bp 1 0.445236541271422 1 0.086987316608429 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183855522 chr3:183855521 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_41349 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40520 DeepMRMD:1;iRNA_m5C:0.999536712157815 40521 chr1 231114969 231114969 1 + G A UCEC 231114974 + 231114954 231114994 41 ATCGAATGCAACCAGGAGGCCAAAGAGTTGTACCGAGACTA ATCGAATGCAACCAGAAGGCCAAAGAGTTGTACCGAGACTA < 41bp 1 0.616214226451536 1 0.26904571056366 experiment 0.767571547096928 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARV1 ENSG00000173409 CDS Human protein_coding chr1:231114974 chr1:231114969 nonsynonymous SNV 0.996 1 16 hm5C_associated_SNPs_41350 0 0 1 0 1 Endoplasmic reticulum 1 0.500231762696797 1 0.999536474606405 hm5C_site_40521 DeepMRMD:1;iRNA_m5C:0.999536474606405 40522 chr20 62305430 62305430 1 + G A UCEC 62305411 + 62305391 62305431 41 GGCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCGG GGCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCAG < 41bp 1 0.0937571369501516 1 0.236219674348831 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62305411 chr20:62305430 synonymous SNV . 0 40 hm5C_associated_SNPs_41351 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40522 DeepMRMD:1;iRNA_m5C:0.999536712157815 40523 chr20 62305430 62305430 1 + G A UCEC 62305412 + 62305392 62305432 41 GCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCGGA GCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCAGA < 41bp 1 0.106646515103826 1 0.0744684636592865 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62305412 chr20:62305430 synonymous SNV . 0 39 hm5C_associated_SNPs_41352 0 0 1 0 0 chromatin 1 0.500237557850668 1 0.999524884298663 hm5C_site_40523 DeepMRMD:1;iRNA_m5C:0.999524884298663 40524 chr12 53663756 53663756 1 + C A UCEC 53663747 + 53663727 53663767 41 GGGCATTGTATGAGAGCTGCCAGTTCTTCCTTTCAGGCCTG GGGCATTGTATGAGAGCTGCCAGTTCTTCATTTCAGGCCTG < 41bp 1 0.18668966383879 1 0.296596586704254 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663747 chr12:53663756 nonsynonymous SNV 0.987 0 30 hm5C_associated_SNPs_41355 0 0 1 0 0 Nucleus 1 0.500231643921256 1 0.999536712157488 hm5C_site_40524 DeepMRMD:1;iRNA_m5C:0.999536712157488 40525 chr2 24888646 24888646 1 + A C UCEC 24888633 + 24888613 24888653 41 AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAACATAAATA < 41bp 1 0.358626329072736 1 0.674253344535828 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24888633 chr2:24888646 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_41356 0 0 1 0 1 Cytosol 1 0.500231643921092 0.651493310928344 0.999536712157816 hm5C_site_40525 DeepMRMD:0.651493310928344;iRNA_m5C:0.999536712157816 40526 chrX 110954923 110954923 1 + G T UCEC 110954916 + 110954896 110954936 41 TTTGAAGTATGTGGAGGGATCTTTTGAGAAATACCTGGAAC TTTGAAGTATGTGGAGGGATCTTTTGATAAATACCTGGAAC < 41bp 1 0.152410312619914 1 0.0985323488712311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110954916 chrX:110954923 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_41357 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40526 DeepMRMD:1;iRNA_m5C:0.999536712157815 40527 chr17 38991257 38991257 1 + G A UCEC 38991250 + 38991230 38991270 41 CTCAGCTCAGCAATCTCATGCCGGTTGGCAATTGTCAGCAG CTCAGCTCAGCAATCTCATGCCGGTTGACAATTGTCAGCAG < 41bp 1 0.616677066123014 1 0.390873730182648 experiment 0.766645867753972 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM99 ENSG00000167920 CDS Human protein_coding chr17:38991250 chr17:38991257 stopgain 0.001 0 28 hm5C_associated_SNPs_41358 0 0 1 0 0 Ribosome 1 0.500233446594102 1 0.999533106811795 hm5C_site_40527 DeepMRMD:1;iRNA_m5C:0.999533106811795 40528 chr7 5336811 5336811 1 + C T UCEC 5336820 + 5336800 5336840 41 CACGACGTTGTCGCCGGGGACGTCCACTTCGTAAGTGCGCA CACGACGTTGTTGCCGGGGACGTCCACTTCGTAAGTGCGCA < 41bp 1 0.0652008706374895 1 0.136228829622269 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336820 chr7:5336811 synonymous SNV . 0 12 hm5C_associated_SNPs_41359 0 0 0 0 1 Endoplasmic reticulum 1 0.500231599833091 1 0.999536800333818 hm5C_site_40528 DeepMRMD:1;iRNA_m5C:0.999536800333818 40529 chr5 179151724 179151724 1 + G T UCEC 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAT < 41bp 1 0.50220718642122 1 0.699438214302063 experiment 0.99558562715756 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151724 stopgain 0.998 0 41 hm5C_associated_SNPs_41360 0 0 1 0 2 Nucleus 1 0.500235045469353 0.601123571395874 0.999529909061294 hm5C_site_40529 DeepMRMD:0.601123571395874;iRNA_m5C:0.999529909061294 40530 chr8 145727127 145727127 1 + C T UCEC 145727126 + 145727106 145727146 41 GCGACCCCCACCTGAGGGGCCCGAGAGCCCTGAGACAGCTG GCGACCCCCACCTGAGGGGCCTGAGAGCCCTGAGACAGCTG < 41bp 1 0.535105117654047 1 0.372764825820923 experiment 0.929789764691905 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145727126 chr8:145727127 synonymous SNV . 0 22 hm5C_associated_SNPs_41362 0 0 0 0 0 Ribosome 1 0.500231644520478 1 0.999536710959045 hm5C_site_40530 DeepMRMD:1;iRNA_m5C:0.999536710959045 40531 chr19 38572457 38572457 1 + C T UCEC 38572456 + 38572436 38572476 41 GGGCGTGCGCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGG GGGCGTGCGCGCAAGGGTGGCTGACTGGCCGCCCAAGCGGG < 41bp 1 0.146940766837809 1 0.260804712772369 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572456 chr19:38572457 synonymous SNV . 0 22 hm5C_associated_SNPs_41363 0 0 0 0 0 Ribosome 1 0.500231642258279 1 0.999536715483442 hm5C_site_40531 DeepMRMD:1;iRNA_m5C:0.999536715483442 40532 chr19 38572457 38572457 1 + C T UCEC 38572464 + 38572444 38572484 41 GCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTG GCGCAAGGGTGGCTGACTGGCCGCCCAAGCGGGAGGCCCTG < 41bp 1 0.136889841118242 1 0.154681861400604 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572464 chr19:38572457 synonymous SNV . 0 14 hm5C_associated_SNPs_41364 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40532 DeepMRMD:1;iRNA_m5C:0.999536712157815 40533 chr19 38572457 38572457 1 + C T UCEC 38572465 + 38572445 38572485 41 CGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGA CGCAAGGGTGGCTGACTGGCCGCCCAAGCGGGAGGCCCTGA < 41bp 1 0.214907954413555 1 0.138279438018799 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572465 chr19:38572457 synonymous SNV . 0 13 hm5C_associated_SNPs_41365 0 0 0 0 0 Ribosome 1 0.500231643965746 1 0.999536712068508 hm5C_site_40533 DeepMRMD:1;iRNA_m5C:0.999536712068508 40534 chr19 38572457 38572457 1 + C T UCEC 38572467 + 38572447 38572487 41 CAAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGA CAAGGGTGGCTGACTGGCCGCCCAAGCGGGAGGCCCTGAGA < 41bp 1 0.19783412659187 1 0.327652454376221 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572467 chr19:38572457 synonymous SNV . 0 11 hm5C_associated_SNPs_41366 0 0 0 0 0 Ribosome 1 0.500231643916814 1 0.999536712166373 hm5C_site_40534 DeepMRMD:1;iRNA_m5C:0.999536712166373 40535 chr19 38572457 38572457 1 + C T UCEC 38572468 + 38572448 38572488 41 AAGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAG AAGGGTGGCTGACTGGCCGCCCAAGCGGGAGGCCCTGAGAG < 41bp 1 0.0733007157121879 1 0.712732374668121 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572468 chr19:38572457 synonymous SNV . 0 10 hm5C_associated_SNPs_41367 0 0 0 0 0 Ribosome 1 0.500231610937145 0.574535250663758 0.99953677812571 hm5C_site_40535 DeepMRMD:0.574535250663758;iRNA_m5C:0.99953677812571 40536 chr19 38572457 38572457 1 + C T UCEC 38572469 + 38572449 38572489 41 AGGGTGGCCGACTGGCCGCCCAAGCGGGAGGCCCTGAGAGA AGGGTGGCTGACTGGCCGCCCAAGCGGGAGGCCCTGAGAGA < 41bp 1 0.220671929270635 1 0.498732000589371 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572469 chr19:38572457 synonymous SNV . 0 9 hm5C_associated_SNPs_41368 0 0 0 0 0 Ribosome 1 0.500231643920957 1 0.999536712158087 hm5C_site_40536 DeepMRMD:1;iRNA_m5C:0.999536712158087 40537 chr13 77661714 77661714 1 + G T UCEC 77661728 - 77661708 77661748 41 TAATGTCATCCAAACCACTTCTCTCCATGATATTCTGTGGC TAATGTCATCCAAACCACTTCTCTCCATGATATTATGTGGC < 41bp 1 0.0247054973703248 1 0.519282281398773 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYCBP2 ENSG00000005810 CDS Human protein_coding chr13:77661728 chr13:77661714 nonsynonymous SNV 0.997 3 35 hm5C_associated_SNPs_41369 0 0 1 0 2 Cytosol 1 0.50023164391139 0.961435437202454 0.999536712177219 hm5C_site_40537 DeepMRMD:0.961435437202454;iRNA_m5C:0.999536712177219 40538 chr17 38152550 38152550 1 + C T UCEC 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGTGCATC < 41bp 1 0.301626372223051 1 0.250767350196838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152550 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_41370 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40538 DeepMRMD:1;iRNA_m5C:0.999536712157815 40539 chr2 114709399 114709399 1 + G T UCEC 114709379 + 114709359 114709399 41 TTTGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGG TTTGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGT < 41bp 1 0.623994821831934 1 0.200646549463272 experiment 0.752010356336133 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114709379 chr2:114709399 stopgain 0.997 1 41 hm5C_associated_SNPs_41371 0 0 1 0 1 Ribosome 1 0.500231643828312 1 0.999536712343375 hm5C_site_40539 DeepMRMD:1;iRNA_m5C:0.999536712343375 40540 chr2 114709399 114709399 1 + G T UCEC 114709380 + 114709360 114709400 41 TTGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGGA TTGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGTA < 41bp 1 0.349051606833142 1 0.274563610553741 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114709380 chr2:114709399 stopgain 0.997 1 40 hm5C_associated_SNPs_41372 0 0 1 0 1 Ribosome 1 0.500231753170027 1 0.999536493659946 hm5C_site_40540 DeepMRMD:1;iRNA_m5C:0.999536493659946 40541 chr2 114709399 114709399 1 + G T UCEC 114709381 + 114709361 114709401 41 TGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGGAA TGAAAAGAACTGTAGATGCCCGGCTGAAATTAAGTGAGTAA < 41bp 1 0.544791381029743 1 0.396089136600494 experiment 0.910417237940514 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114709381 chr2:114709399 stopgain 0.997 1 39 hm5C_associated_SNPs_41373 0 0 1 0 1 Ribosome 1 0.500231549138419 1 0.999536901723161 hm5C_site_40541 DeepMRMD:1;iRNA_m5C:0.999536901723161 40542 chr19 50339177 50339177 1 + G A UCEC 50339162 + 50339142 50339182 41 TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCAAAGCC < 41bp 1 0.0155450457367539 1 0.0502949059009552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339162 chr19:50339177 nonsynonymous SNV 0.992 2 36 hm5C_associated_SNPs_41374 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40542 DeepMRMD:1;iRNA_m5C:0.999536712157815 40543 chr19 50339177 50339177 1 + G A UCEC 50339163 + 50339143 50339183 41 CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCAAAGCCT < 41bp 1 0.100830790574552 1 0.0419811308383942 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339163 chr19:50339177 nonsynonymous SNV 0.992 2 35 hm5C_associated_SNPs_41375 0 0 1 0 1 chromatin 1 0.500231643916927 1 0.999536712166147 hm5C_site_40543 DeepMRMD:1;iRNA_m5C:0.999536712166147 40544 chr10 118306831 118306831 1 + C T UCEC 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTTGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC < 41bp 1 0.351988384058207 1 0.053823322057724 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306831 synonymous SNV . 0 3 hm5C_associated_SNPs_41376 0 0 0 0 1 unknown 1 0.500231644442027 1 0.999536711115946 hm5C_site_40544 DeepMRMD:1;iRNA_m5C:0.999536711115946 40545 chr7 129939218 129939218 1 + T C UCEC 129939222 + 129939202 129939242 41 ATCCCAGGGCTTAGAGTACGCAGTGACAATTGAGGACCTGC ATCCCAGGGCTTAGAGCACGCAGTGACAATTGAGGACCTGC < 41bp 1 0.4969561381467 1 0.208704441785812 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129939222 chr7:129939218 nonsynonymous SNV 0.373 3 17 hm5C_associated_SNPs_41378 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164153576 1 0.99953671692848 hm5C_site_40545 DeepMRMD:1;iRNA_m5C:0.99953671692848 40546 chr13 115091192 115091192 1 + G T UCEC 115091186 + 115091166 115091206 41 AAGAAGCTCAAGAAAGACAACCAAGAGAGCTCAGACGCTGA AAGAAGCTCAAGAAAGACAACCAAGATAGCTCAGACGCTGA < 41bp 1 0.153870502733045 1 0.346563071012497 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115091186 chr13:115091192 nonsynonymous SNV 0.999 0 27 hm5C_associated_SNPs_41379 0 0 0 0 0 nucleus 1 0.50023162832739 1 0.999536743345219 hm5C_site_40546 DeepMRMD:1;iRNA_m5C:0.999536743345219 40547 chr12 109961890 109961890 1 + C T UCEC 109961906 + 109961886 109961926 41 ACTCCGAGTTCTATAAAAACCTCACCTCCATCAAGGTGAGC ACTCTGAGTTCTATAAAAACCTCACCTCCATCAAGGTGAGC < 41bp 1 0.222371315291148 1 0.0417645871639252 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE3B ENSG00000151148 CDS Human protein_coding chr12:109961906 chr12:109961890 synonymous SNV . 0 5 hm5C_associated_SNPs_41380 0 0 1 0 1 Cytosol 1 0.500231643994136 1 0.999536712011727 hm5C_site_40547 DeepMRMD:1;iRNA_m5C:0.999536712011727 40548 chr13 53039495 53039495 1 + A G UCEC 53039491 + 53039471 53039511 41 GATTAAAAATATTCCAGATGCCAAAAAGCTTGTTAAGTATT GATTAAAAATATTCCAGATGCCAAGAAGCTTGTTAAGTATT < 41bp 1 0.131142184461404 1 0.0875152349472046 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CKAP2 ENSG00000136108 CDS Human protein_coding chr13:53039491 chr13:53039495 synonymous SNV . 0 25 hm5C_associated_SNPs_41381 0 0 1 0 1 Cytosol 1 0.500232065341407 1 0.999535869317186 hm5C_site_40548 DeepMRMD:1;iRNA_m5C:0.999535869317186 40549 chrX 24483647 24483647 1 + G A UCEC 24483663 + 24483643 24483683 41 CGTCGCCGCTCTCCATCAAACAATTCCTGGACTTCGGTGAG CGTCACCGCTCTCCATCAAACAATTCCTGGACTTCGGTGAG < 41bp 1 0.201533774077105 1 0.249026954174042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK3 ENSG00000067992 CDS Human protein_coding chrX:24483663 chrX:24483647 synonymous SNV . 0 5 hm5C_associated_SNPs_41383 0 0 1 0 1 exosome 1 0.50023164285248 1 0.99953671429504 hm5C_site_40549 DeepMRMD:1;iRNA_m5C:0.99953671429504 40550 chr12 104325333 104325333 1 + T G UCEC 104325338 + 104325318 104325358 41 TGAAGTTGATGTGGATGGTACAGTAGAAGAGGATCTGGGTA TGAAGTTGATGTGGAGGGTACAGTAGAAGAGGATCTGGGTA < 41bp 1 0.686674843958808 1 0.323142290115356 experiment 0.626650312082384 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104325338 chr12:104325333 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_41384 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40550 DeepMRMD:1;iRNA_m5C:0.999536712157815 40551 chr3 9775909 9775909 1 + C T UCEC 9775905 + 9775885 9775925 41 TACGAGTGCCCGGTGGAGACCTGCCGAAAGGTCTACAAGAG TACGAGTGCCCGGTGGAGACCTGCTGAAAGGTCTACAAGAG < 41bp 1 0.497066249459025 1 0.315573900938034 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9775905 chr3:9775909 stopgain 1.000 1 25 hm5C_associated_SNPs_41385 0 0 1 0 1 Nucleus 1 0.500231643891709 1 0.999536712216581 hm5C_site_40551 DeepMRMD:1;iRNA_m5C:0.999536712216581 40552 chr7 4002354 4002354 1 + C T UCEC 4002345 + 4002325 4002365 41 CCATCTCCATCAGCAGGCTCCAGAATCCTCGATACAAAGTG CCATCTCCATCAGCAGGCTCCAGAATCCTTGATACAAAGTG < 41bp 1 0.183745146685236 1 0.344102650880814 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SDK1 ENSG00000146555 CDS Human protein_coding chr7:4002345 chr7:4002354 stopgain 0.581 1 30 hm5C_associated_SNPs_41386 0 0 1 0 1 cytosol 1 0.500231624592996 1 0.999536750814009 hm5C_site_40552 DeepMRMD:1;iRNA_m5C:0.999536750814009 40553 chr17 7340158 7340158 1 + C T UCEC 7340160 + 7340140 7340180 41 TGATCCCTGTCCCGGGTGCTCCGCGTCTGGTGCACGCAGCT TGATCCCTGTCCCGGGTGTTCCGCGTCTGGTGCACGCAGCT < 41bp 1 0.436617434080389 1 0.426035046577454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM102 ENSG00000181284 CDS Human protein_coding chr17:7340160 chr17:7340158 nonsynonymous SNV 0.063 1 19 hm5C_associated_SNPs_41387 0 0 0 0 0 exosome 1 0.500231644076143 1 0.999536711847714 hm5C_site_40553 DeepMRMD:1;iRNA_m5C:0.999536711847714 40554 chr7 128478852 128478852 1 + C T UCEC 128478838 + 128478818 128478858 41 CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTCGGAAGG CCCATCACCCGCAGTCCCTTCCCTGTCCATGTGTTGGAAGG < 41bp 1 0.0606853698806197 1 0.0632371604442596 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128478838 chr7:128478852 nonsynonymous SNV 0.946 0 35 hm5C_associated_SNPs_41388 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_40554 DeepMRMD:1;iRNA_m5C:0.999536712157816 40555 chr3 9859436 9859436 1 + C A UCEC 9859427 + 9859407 9859447 41 TGCCTGGGGGCTGAGGATGACAAAAAAGCCTTCATAGGTAA TGCCTGGGGGCTGAGGATGACAAAAAAGCATTCATAGGTAA < 41bp 1 0.584932425096586 1 0.504622459411621 experiment 0.830135149806829 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9859427 chr3:9859436 synonymous SNV . 0 30 hm5C_associated_SNPs_41389 0 0 1 0 1 unknown 1 0.500231643921075 0.990755081176758 0.999536712157849 hm5C_site_40555 DeepMRMD:0.990755081176758;iRNA_m5C:0.999536712157849 40556 chr1 109804153 109804153 1 + C T UCEC 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGCCACAAAGGAGCGTGACGGGTTGCTGTTGTACAATGG < 41bp 1 0.340505896954964 1 0.231809020042419 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804153 synonymous SNV . 0 18 hm5C_associated_SNPs_41390 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_40556 DeepMRMD:1;iRNA_m5C:0.999536712157814 40557 chr19 7584362 7584362 1 + G A UCEC 7584367 + 7584347 7584387 41 CGACGCCGAAGCTCCGGGCTCGGAACCCCAAGATCCCGACC CGACGCCGAAGCTCCAGGCTCGGAACCCCAAGATCCCGACC < 41bp 1 0.668246469074859 1 0.626158475875854 experiment 0.663507061850282 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF358 ENSG00000198816 CDS Human protein_coding chr19:7584367 chr19:7584362 synonymous SNV . 0 16 hm5C_associated_SNPs_41391 0 0 1 0 0 Cytosol 1 0.500231643921092 0.747683048248292 0.999536712157815 hm5C_site_40557 DeepMRMD:0.747683048248292;iRNA_m5C:0.999536712157815 40558 chr2 32897401 32897401 1 + C T UCEC 32897396 + 32897376 32897416 41 TAAAGTTAGCAGATTGTGAACAGTTCCAGATGCCGGATCTG TAAAGTTAGCAGATTGTGAACAGTTTCAGATGCCGGATCTG < 41bp 1 0.242891408672043 1 0.0853863954544067 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC27 ENSG00000018699 CDS Human protein_coding chr2:32897396 chr2:32897401 synonymous SNV . 0 26 hm5C_associated_SNPs_41392 0 0 1 0 2 Nucleus 1 0.500231643921213 1 0.999536712157574 hm5C_site_40558 DeepMRMD:1;iRNA_m5C:0.999536712157574 40559 chr1 231398518 231398518 1 + G A UCEC 231398517 + 231398497 231398537 41 TTGTTCTGCTGCCTAGTCATCGAAGTTACATTGACTTCCTC TTGTTCTGCTGCCTAGTCATCAAAGTTACATTGACTTCCTC < 41bp 1 0.660198451118007 1 0.875037848949432 experiment 0.679603097763987 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231398517 chr1:231398518 nonsynonymous SNV 0.994 5 22 hm5C_associated_SNPs_41393 0 0 0 0 2 Cytosol 1 0.500231681760438 0.249924302101136 0.999536636479123 hm5C_site_40559 DeepMRMD:0.249924302101136;iRNA_m5C:0.999536636479123 40560 chr12 69966005 69966005 1 + C T UCEC 69966003 + 69965983 69966023 41 ACATCCTTCTGTGGGAAGTGCTCGCCTGCCTTCAGTAGGGG ACATCCTTCTGTGGGAAGTGCTTGCCTGCCTTCAGTAGGGG < 41bp 1 0.208579790843639 1 0.111084789037704 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FRS2 ENSG00000166225 CDS Human protein_coding chr12:69966003 chr12:69966005 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_41394 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40560 DeepMRMD:1;iRNA_m5C:0.999536712157815 40561 chr15 41192215 41192215 1 + G A UCEC 41192201 + 41192181 41192221 41 TACCACGTGCAACGGGAGGCCCGAGATGTCTGGCGCACCTA TACCACGTGCAACGGGAGGCCCGAGATGTCTGGCACACCTA < 41bp 1 0.318731100090296 1 0.498149693012238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192201 chr15:41192215 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_41395 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40561 DeepMRMD:1;iRNA_m5C:0.999536712157815 40562 chr19 49102411 49102411 1 + G T UCEC 49102417 + 49102397 49102437 41 TGCGGCGACTGGAAGAACCACTTCACGGTGGCCCAGAGCGA TGCGGCGACTGGAATAACCACTTCACGGTGGCCCAGAGCGA < 41bp 1 0.483927861312305 1 0.361419767141342 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49102417 chr19:49102411 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_41397 0 0 0 0 1 exosome 1 0.500231644244642 1 0.999536711510716 hm5C_site_40562 DeepMRMD:1;iRNA_m5C:0.999536711510716 40563 chr3 50131276 50131276 1 + C T UCEC 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCATGCTGTGCGGCCTTCCCAT < 41bp 1 0.427609847099502 1 0.363150864839554 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131276 nonsynonymous SNV 0.988 4 28 hm5C_associated_SNPs_41398 0 0 1 0 2 Cytosol 1 0.500231643811414 1 0.999536712377172 hm5C_site_40563 DeepMRMD:1;iRNA_m5C:0.999536712377172 40564 chr2 113315624 113315624 1 + C T UCEC 113315643 + 113315623 113315663 41 ACCTTTTTGCTACTGGGAATCTGCGTTCTAAAACAGGTAAA ATCTTTTTGCTACTGGGAATCTGCGTTCTAAAACAGGTAAA < 41bp 1 0.524870526416117 1 0.768506169319153 experiment 0.950258947167766 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113315643 chr2:113315624 synonymous SNV . 0 2 hm5C_associated_SNPs_41399 0 0 1 0 1 Nucleus 1 0.500231695428147 0.462987661361694 0.999536609143705 hm5C_site_40564 DeepMRMD:0.462987661361694;iRNA_m5C:0.999536609143705 40565 chr17 4685828 4685828 1 + G A UCEC 4685815 + 4685795 4685835 41 CAGATGCTGCGCTCGGTCTTCTCCTCGGCGTTCGGGGTGCT CAGATGCTGCGCTCGGTCTTCTCCTCGGCGTTCAGGGTGCT < 41bp 1 0.368669892900445 1 0.436198323965073 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4685815 chr17:4685828 nonsynonymous SNV 0.993 3 34 hm5C_associated_SNPs_41400 0 0 1 0 1 cytosol 1 0.500231644878528 1 0.999536710242943 hm5C_site_40565 DeepMRMD:1;iRNA_m5C:0.999536710242943 40566 chr2 32631582 32631582 1 + G T UCEC 32631577 + 32631557 32631597 41 TTGATTTAAGTGATGATTTACTGGAGGATTCAGACAGTGAA TTGATTTAAGTGATGATTTACTGGATGATTCAGACAGTGAA < 41bp 1 0.304471355604928 1 0.678566098213196 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32631577 chr2:32631582 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_41401 0 0 1 0 2 Nucleus 1 0.500232018892727 0.642867803573608 0.999535962214547 hm5C_site_40566 DeepMRMD:0.642867803573608;iRNA_m5C:0.999535962214547 40567 chr11 35201856 35201856 1 + G A UCEC 35201875 + 35201855 35201895 41 CGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGG CAGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGG < 41bp 1 0.319509711945727 1 0.463130205869675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201875 chr11:35201856 nonsynonymous SNV 0.577 4 2 hm5C_associated_SNPs_41402 0 0 1 0 2 Nucleus 1 0.500231643921103 1 0.999536712157795 hm5C_site_40567 DeepMRMD:1;iRNA_m5C:0.999536712157795 40568 chrX 47101579 47101579 1 + C T UCEC 47101578 + 47101558 47101598 41 CAAGTCCACGCTGGTGTGCCCCGATTGTGGCAATGTATCTG CAAGTCCACGCTGGTGTGCCCTGATTGTGGCAATGTATCTG < 41bp 1 0.315759006393415 1 0.0622163414955139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47101578 chrX:47101579 synonymous SNV . 0 22 hm5C_associated_SNPs_41403 0 0 1 0 1 cytosol 1 0.5002316438607 1 0.999536712278599 hm5C_site_40568 DeepMRMD:1;iRNA_m5C:0.999536712278599 40569 chr3 49728616 49728616 1 + C T UCEC 49728615 + 49728595 49728635 41 AAGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCA AAGGATGGCATCCAAGGGGGCTGGCATGTCTTTCTCCCGCA < 41bp 1 0.317792547706886 1 0.363150089979172 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49728615 chr3:49728616 synonymous SNV . 0 22 hm5C_associated_SNPs_41404 0 0 1 0 2 Nucleus 1 0.500231568955869 1 0.999536862088262 hm5C_site_40569 DeepMRMD:1;iRNA_m5C:0.999536862088262 40570 chr15 31197918 31197918 1 + T C UCEC 31197933 + 31197913 31197953 41 TGATATCCCTCACAGCATTCCTTTGGAGCAGGGGTCAAGCT TGATACCCCTCACAGCATTCCTTTGGAGCAGGGGTCAAGCT < 41bp 1 0.29322110742723 1 0.105258017778397 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAN1 ENSG00000198690 CDS Human protein_coding chr15:31197933 chr15:31197918 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_41405 0 0 1 0 0 Cytosol 1 0.500231621428512 1 0.999536757142976 hm5C_site_40570 DeepMRMD:1;iRNA_m5C:0.999536757142976 40571 chr2 220503471 220503471 1 + G A UCEC 220503474 + 220503454 220503494 41 GACCTCTCCCGATAAGCGCTCGTGGTTCATCCCACCCCTGG GACCTCTCCCGATAAGCACTCGTGGTTCATCCCACCCCTGG < 41bp 1 0.612199326718548 1 0.850510358810425 experiment 0.775601346562905 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503474 chr2:220503471 nonsynonymous SNV 0.937 5 18 hm5C_associated_SNPs_41406 0 0 0 0 1 Cytosol 1 0.500231643921082 0.29897928237915 0.999536712157835 hm5C_site_40571 DeepMRMD:0.29897928237915;iRNA_m5C:0.999536712157835 40572 chr17 55191847 55191847 1 + G A UCEC 55191830 + 55191810 55191850 41 CCCTCTACAGCTCATGCTGCCTGATGGCATCACCGTGGAGG CCCTCTACAGCTCATGCTGCCTGATGGCATCACCGTGAAGG < 41bp 1 0.255374359786748 1 0.0868304967880249 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55191830 chr17:55191847 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_41407 0 0 1 1 1 Endoplasmic reticulum 1 0.50023374991826 1 0.99953250016348 hm5C_site_40572 DeepMRMD:1;iRNA_m5C:0.99953250016348 40573 chr1 231114993 231114993 1 + T C UCEC 231114974 + 231114954 231114994 41 ATCGAATGCAACCAGGAGGCCAAAGAGTTGTACCGAGACTA ATCGAATGCAACCAGGAGGCCAAAGAGTTGTACCGAGACCA < 41bp 1 0.619558993260151 1 0.445395410060883 experiment 0.760882013479699 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARV1 ENSG00000173409 CDS Human protein_coding chr1:231114974 chr1:231114993 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_41408 0 0 1 0 1 Endoplasmic reticulum 1 0.500232172173678 1 0.999535655652644 hm5C_site_40573 DeepMRMD:1;iRNA_m5C:0.999535655652644 40574 chr2 173429368 173429368 1 + G A UCEC 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCAATTC < 41bp 1 0.450441573180742 1 0.0647924244403839 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429368 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_41409 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_40574 DeepMRMD:1;iRNA_m5C:0.999536712157816 40575 chr11 45924115 45924115 1 + G A UCEC 45924098 + 45924078 45924118 41 GCCCCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCGAAT GCCCCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCAAAT < 41bp 1 0.0589647319096198 1 0.0904324352741241 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924098 chr11:45924115 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_41410 0 0 0 0 0 Endoplasmic reticulum 1 0.500230204767493 1 0.999539590465014 hm5C_site_40575 DeepMRMD:1;iRNA_m5C:0.999539590465014 40576 chr11 45924115 45924115 1 + G A UCEC 45924099 + 45924079 45924119 41 CCCCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCGAATC CCCCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCAAATC < 41bp 1 0.123515570037115 1 0.256733417510986 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924099 chr11:45924115 nonsynonymous SNV 0.997 3 37 hm5C_associated_SNPs_41411 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643902435 1 0.999536712195131 hm5C_site_40576 DeepMRMD:1;iRNA_m5C:0.999536712195131 40577 chrX 12838853 12838853 1 + C A UCEC 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCGCATTTGAGGCTGTTGTCGTCACAAACACAA < 41bp 1 0.288677130995295 1 0.0640494227409363 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838853 synonymous SNV . 0 13 hm5C_associated_SNPs_41414 0 0 1 0 2 Ribosome 1 0.500231644458518 1 0.999536711082963 hm5C_site_40577 DeepMRMD:1;iRNA_m5C:0.999536711082963 40578 chr7 94057026 94057026 1 + G A UCEC 94057027 + 94057007 94057047 41 CGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCAC CGATGGAGACTTCTACAGGACTGACCAGCCTCGCTCAGCAC < 41bp 1 0.13807671910617 1 0.0230092704296112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057027 chr7:94057026 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_41415 0 0 0 0 1 Endoplasmic reticulum 1 0.500231759185744 1 0.999536481628512 hm5C_site_40578 DeepMRMD:1;iRNA_m5C:0.999536481628512 40579 chr7 94057026 94057026 1 + G A UCEC 94057032 + 94057012 94057052 41 GAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCT GAGACTTCTACAGGACTGACCAGCCTCGCTCAGCACCTTCT < 41bp 1 0.12146151109489 1 0.167815566062927 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94057032 chr7:94057026 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_41416 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921562 1 0.999536712156876 hm5C_site_40579 DeepMRMD:1;iRNA_m5C:0.999536712156876 40580 chr12 53663545 53663545 1 + C T UCEC 53663559 + 53663539 53663579 41 CATCAGCGCAGTGGAGAAGGCTCACAGTTACCTAAGGAACA CATCAGTGCAGTGGAGAAGGCTCACAGTTACCTAAGGAACA < 41bp 1 0.243649854474331 1 0.0417483448982239 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663559 chr12:53663545 synonymous SNV . 0 7 hm5C_associated_SNPs_41417 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40580 DeepMRMD:1;iRNA_m5C:0.999536712157815 40581 chr1 109803862 109803862 1 + G A UCEC 109803866 + 109803846 109803886 41 CGCGGCCTGCGCCAGCGTTTCCACTTCACCCTGGCCCTCTC CGCGGCCTGCGCCAGCATTTCCACTTCACCCTGGCCCTCTC < 41bp 1 0.182697610232211 1 0.177073895931244 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109803866 chr1:109803862 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_41418 0 0 1 0 1 Endoplasmic reticulum 1 0.500232356831908 1 0.999535286336184 hm5C_site_40581 DeepMRMD:1;iRNA_m5C:0.999535286336184 40582 chrX 135106623 135106623 1 + C A UCEC 135106613 + 135106593 135106633 41 TGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTT TGGGTATTTGGTGGTGGCACCACTGCAATGATGTCATGCTT < 41bp 1 0.312932712501633 1 0.590934574604034 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106613 chrX:135106623 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_41419 0 0 1 0 1 Endoplasmic reticulum 1 0.500231168616315 0.818130850791932 0.99953766276737 hm5C_site_40582 DeepMRMD:0.818130850791932;iRNA_m5C:0.99953766276737 40583 chr2 113950927 113950927 1 + C T UCEC 113950934 + 113950914 113950954 41 CACCATTGCAATCCGGGGATCTTCCCCTCAGTAGGTAGGGA CACCATTGCAATCTGGGGATCTTCCCCTCAGTAGGTAGGGA < 41bp 1 0.0425793727629333 1 0.106544435024261 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950934 chr2:113950927 nonsynonymous SNV 0.376 0 14 hm5C_associated_SNPs_41420 0 0 0 0 2 chromatin 1 0.500231643921089 1 0.999536712157822 hm5C_site_40583 DeepMRMD:1;iRNA_m5C:0.999536712157822 40584 chr11 45882558 45882558 1 + C T UCEC 45882565 + 45882545 45882585 41 ACGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGT ACGACGAGACCTATGGCGTGCCCTCCCTGGAGGAGCTGGGT < 41bp 1 0.0255518805751325 1 0.0464514493942261 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882565 chr11:45882558 synonymous SNV . 0 14 hm5C_associated_SNPs_41421 0 0 1 0 1 Nucleus 1 0.500231643919798 1 0.999536712160404 hm5C_site_40584 DeepMRMD:1;iRNA_m5C:0.999536712160404 40585 chr11 45882558 45882558 1 + C T UCEC 45882566 + 45882546 45882586 41 CGACGAGACCTACGGCGTGCCCTCCCTGGAGGAGCTGGGTG CGACGAGACCTATGGCGTGCCCTCCCTGGAGGAGCTGGGTG < 41bp 1 0.044328189614818 1 0.0429269373416901 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45882566 chr11:45882558 synonymous SNV . 0 13 hm5C_associated_SNPs_41422 0 0 1 0 1 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_40585 DeepMRMD:1;iRNA_m5C:0.999536712157818 40586 chr10 105203013 105203013 1 + C T UCEC 105203022 + 105203002 105203042 41 AGGTCTTTGAGCGAGCCGTGCAGTACAACGAGCCTCTCAAA AGGTCTTTGAGTGAGCCGTGCAGTACAACGAGCCTCTCAAA < 41bp 1 0.226716690806094 1 0.757209062576294 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203022 chr10:105203013 stopgain 0.968 1 12 hm5C_associated_SNPs_41423 0 0 1 0 2 Nucleus 1 0.500231645520307 0.485581874847412 0.999536708959385 hm5C_site_40586 DeepMRMD:0.485581874847412;iRNA_m5C:0.999536708959385 40587 chr11 67354012 67354012 1 + C T UCEC 67353999 + 67353979 67354019 41 CAAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACC CAAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTATGTGAACC < 41bp 1 0.016433099903584 1 0.0901463627815247 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67353999 chr11:67354012 synonymous SNV . 0 34 hm5C_associated_SNPs_41424 0 0 1 0 0 Cytosol 1 0.500231643921122 1 0.999536712157757 hm5C_site_40587 DeepMRMD:1;iRNA_m5C:0.999536712157757 40588 chr11 67354012 67354012 1 + C T UCEC 67354000 + 67353980 67354020 41 AAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACCT AAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTATGTGAACCT < 41bp 1 0.238184510035131 1 0.165695309638977 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67354000 chr11:67354012 synonymous SNV . 0 33 hm5C_associated_SNPs_41425 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40588 DeepMRMD:1;iRNA_m5C:0.999536712157815 40589 chr9 33912025 33912025 1 + C T UCEC 33912033 + 33912013 33912053 41 CCCAGCCAATGTCGATGCTTCAGTTATGTTCAGGAAATGGA CCCAGCCAATGTTGATGCTTCAGTTATGTTCAGGAAATGGA < 41bp 1 0.145484394877676 1 0.0540899038314819 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE2R2 ENSG00000107341 CDS Human protein_coding chr9:33912033 chr9:33912025 synonymous SNV . 0 13 hm5C_associated_SNPs_41426 0 0 1 0 2 Cytosol 1 0.500231674266216 1 0.999536651467568 hm5C_site_40589 DeepMRMD:1;iRNA_m5C:0.999536651467568 40590 chr1 156106048 156106048 1 + C T UCEC 156106055 + 156106035 156106075 41 GCGCAGCCGTGGCCGTGCTTCCTCTCACTCATCCCAGACAC GCGCAGCCGTGGCTGTGCTTCCTCTCACTCATCCCAGACAC < 41bp 1 0.200531257245635 1 0.051869809627533 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156106055 chr1:156106048 nonsynonymous SNV 0.996 5 14 hm5C_associated_SNPs_41427 4 0 1 0 1 Cytosol 1 0.500231599138207 1 0.999536801723585 hm5C_site_40590 DeepMRMD:1;iRNA_m5C:0.999536801723585 not specified not specified 40591 chr1 160325697 160325697 1 + G A UCEC 160325712 + 160325692 160325732 41 TATGAGCTTGCAGGAGGAACCAACTTCAGCGACACAGTTCA TATGAACTTGCAGGAGGAACCAACTTCAGCGACACAGTTCA < 41bp 1 0.553502634349386 1 0.260097920894623 experiment 0.892994731301228 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160325712 chr1:160325697 synonymous SNV . 0 6 hm5C_associated_SNPs_41428 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643945032 1 0.999536712109936 hm5C_site_40591 DeepMRMD:1;iRNA_m5C:0.999536712109936 40592 chr1 156876658 156876658 1 + G T UCEC 156876640 + 156876620 156876660 41 TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAGAG TGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGATAG < 41bp 1 0.341432312887983 1 0.137677788734436 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156876640 chr1:156876658 nonsynonymous SNV 0.981 1 39 hm5C_associated_SNPs_41429 0 0 0 0 1 cytosol 1 0.500231643920322 1 0.999536712159356 hm5C_site_40592 DeepMRMD:1;iRNA_m5C:0.999536712159356 40593 chr8 42927434 42927434 1 + G A UCEC 42927423 + 42927403 42927443 41 GATGCAAAGAATTATCATGCCTGGCAGCATCGACAATGGGT GATGCAAAGAATTATCATGCCTGGCAGCATCAACAATGGGT < 41bp 1 0.453204889160651 1 0.0619671940803528 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FNTA ENSG00000168522;ENSG00000254673 CDS Human other chr8:42927423 chr8:42927434 nonsynonymous SNV 0.998 4 32 hm5C_associated_SNPs_41430 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644252422 1 0.999536711495157 hm5C_site_40593 DeepMRMD:1;iRNA_m5C:0.999536711495157 40594 chr1 44436751 44436751 1 + G A UCEC 44436760 + 44436740 44436780 41 CTTCGTGCTTCGTCAACGTTCTGTGGCCTTGGAGCTCTGTG CTTCGTGCTTCATCAACGTTCTGTGGCCTTGGAGCTCTGTG < 41bp 1 0.376933136330835 1 0.0847961604595184 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPH2 ENSG00000132768 CDS Human protein_coding chr1:44436760 chr1:44436751 nonsynonymous SNV 0.013 2 12 hm5C_associated_SNPs_41431 0 0 1 0 0 nucleolus 1 0.500231418838131 1 0.999537162323739 hm5C_site_40594 DeepMRMD:1;iRNA_m5C:0.999537162323739 40595 chr20 42089372 42089372 1 + G A UCEC 42089358 + 42089338 42089378 41 TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCG TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACATTCTCG < 41bp 1 0.435126834560868 1 0.33639520406723 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089358 chr20:42089372 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_41432 0 0 1 0 1 Nucleus 1 0.500231639900442 1 0.999536720199117 hm5C_site_40595 DeepMRMD:1;iRNA_m5C:0.999536720199117 40596 chr5 5303759 5303759 1 + G A UCEC 5303760 + 5303740 5303780 41 CCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCGACGCTGTC CCAACCCCTCGGCCAGAGCACAGCTGCTGCCCGACGCTGTC < 41bp 1 0.529740589409741 1 0.162889569997787 experiment 0.940518821180518 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303760 chr5:5303759 synonymous SNV . 0 20 hm5C_associated_SNPs_41433 0 0 0 0 1 exosome 1 0.500231643919453 1 0.999536712161095 hm5C_site_40596 DeepMRMD:1;iRNA_m5C:0.999536712161095 40597 chrX 70514356 70514356 1 + G T UCEC 70514364 + 70514344 70514384 41 GACAGATGCAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT GACAGATGCAGTTAAGGCTCCTTCCTGCTAACCACGTAAGT < 41bp 1 0.0800038804718592 1 0.131863981485367 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70514364 chrX:70514356 stopgain 1.000 1 13 hm5C_associated_SNPs_41434 0 0 1 0 1 Nucleus 1 0.500231643831348 1 0.999536712337303 hm5C_site_40597 DeepMRMD:1;iRNA_m5C:0.999536712337303 40598 chr20 42249520 42249520 1 + G A UCEC 42249532 + 42249512 42249552 41 TGGCTCACGACAGGAGACATCCACCTAAACCAGATTGATGC TGGCTCACAACAGGAGACATCCACCTAAACCAGATTGATGC < 41bp 1 0.105870875401969 1 0.0426966547966003 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT52 ENSG00000101052 CDS Human protein_coding chr20:42249532 chr20:42249520 synonymous SNV . 0 9 hm5C_associated_SNPs_41435 0 0 1 0 1 chromatin 1 0.50023164392109 1 0.999536712157819 hm5C_site_40598 DeepMRMD:1;iRNA_m5C:0.999536712157819 40599 chr1 9416617 9416617 1 + C T UCEC 9416605 + 9416585 9416625 41 TAGTGAGTGCCGTCTGGGGCCACTGTGAGATCCGAATGCGC TAGTGAGTGCCGTCTGGGGCCACTGTGAGATCTGAATGCGC < 41bp 1 0.245855574609914 1 0.177952021360397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPSB1 ENSG00000171621 CDS Human protein_coding chr1:9416605 chr1:9416617 stopgain 1.000 1 33 hm5C_associated_SNPs_41436 0 0 1 0 1 nucleus 1 0.500230260562005 1 0.99953947887599 hm5C_site_40599 DeepMRMD:1;iRNA_m5C:0.99953947887599 40600 chr9 137701060 137701060 1 + G A UCEC 137701041 + 137701021 137701061 41 TTCTCTAGGGCGAGAAAGGCCCACAAGGCCCAGCTGGCCGA TTCTCTAGGGCGAGAAAGGCCCACAAGGCCCAGCTGGCCAA < 41bp 1 0.257365571151739 1 0.179080456495285 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137701041 chr9:137701060 nonsynonymous SNV 0.999 4 40 hm5C_associated_SNPs_41437 0 0 0 0 2 Nucleus 1 0.500231643926931 1 0.999536712146138 hm5C_site_40600 DeepMRMD:1;iRNA_m5C:0.999536712146138 40601 chr9 71861612 71861612 1 + T C UCEC 71861613 + 71861593 71861633 41 TATATTTCTATAGCTACAATCAACCTAAATTCAGCCAATGA TATATTTCTATAGCTACAACCAACCTAAATTCAGCCAATGA < 41bp 1 0.0541210612203172 1 0.409460991621017 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71861613 chr9:71861612 nonsynonymous SNV 0.996 4 20 hm5C_associated_SNPs_41438 0 0 1 0 1 Nucleus 1 0.500231732750383 1 0.999536534499234 hm5C_site_40601 DeepMRMD:1;iRNA_m5C:0.999536534499234 40602 chr11 71191890 71191890 1 + C T UCEC 71191878 + 71191858 71191898 41 GAGGACTTGCTGGCACCCATCTCTGAGCCCATCGAGTGGAA GAGGACTTGCTGGCACCCATCTCTGAGCCCATTGAGTGGAA < 41bp 1 0.49368469943147 1 0.876479625701904 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71191878 chr11:71191890 synonymous SNV . 0 33 hm5C_associated_SNPs_41439 0 0 1 0 2 Ribosome 1 0.500231643921075 0.247040748596192 0.99953671215785 hm5C_site_40602 DeepMRMD:0.247040748596192;iRNA_m5C:0.99953671215785 40603 chr15 31197344 31197344 1 + T C UCEC 31197363 + 31197343 31197383 41 GTCCAGAAAATACGTAAAGGCTAAAAAATCAATAGATAAGG GCCCAGAAAATACGTAAAGGCTAAAAAATCAATAGATAAGG < 41bp 1 0.439199659435472 1 0.217081040143967 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAN1 ENSG00000198690 CDS Human protein_coding chr15:31197363 chr15:31197344 nonsynonymous SNV 0.998 4 2 hm5C_associated_SNPs_41440 0 0 0 0 0 Cytosol 1 0.500231643921814 1 0.999536712156372 hm5C_site_40603 DeepMRMD:1;iRNA_m5C:0.999536712156372 40604 chr1 26136289 26136289 1 + C T UCEC 26136269 + 26136249 26136289 41 CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCC CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCT < 41bp 1 0.0353406484448395 1 0.153440713882446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136269 chr1:26136289 nonsynonymous SNV 0.995 3 41 hm5C_associated_SNPs_41441 0 0 1 0 1 unknown 1 0.500231643585912 1 0.999536712828176 hm5C_site_40604 DeepMRMD:1;iRNA_m5C:0.999536712828176 40605 chr1 26136289 26136289 1 + C T UCEC 26136270 + 26136250 26136290 41 ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCG ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCTG < 41bp 1 0.139224707766982 1 0.0417031049728394 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136270 chr1:26136289 nonsynonymous SNV 0.995 3 40 hm5C_associated_SNPs_41442 0 0 1 0 1 unknown 1 0.500231699179793 1 0.999536601640415 hm5C_site_40605 DeepMRMD:1;iRNA_m5C:0.999536601640415 40606 chr1 26136289 26136289 1 + C T UCEC 26136273 + 26136253 26136293 41 ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCT ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCTGGCT < 41bp 1 0.097958878545415 1 0.0700403451919556 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136273 chr1:26136289 nonsynonymous SNV 0.995 3 37 hm5C_associated_SNPs_41443 0 0 1 0 1 unknown 1 0.500231686263759 1 0.999536627472481 hm5C_site_40606 DeepMRMD:1;iRNA_m5C:0.999536627472481 40607 chr1 26136289 26136289 1 + C T UCEC 26136274 + 26136254 26136294 41 TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTC TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCTGGCTC < 41bp 1 0.468617106620211 1 0.0512657761573792 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136274 chr1:26136289 nonsynonymous SNV 0.995 3 36 hm5C_associated_SNPs_41444 0 0 1 0 1 unknown 1 0.500231642190251 1 0.999536715619498 hm5C_site_40607 DeepMRMD:1;iRNA_m5C:0.999536715619498 40608 chrX 70516825 70516825 1 + G T UCEC 70516812 + 70516792 70516832 41 CAGCAGCAGGACCAAGTGGACCGCAACATCAAGGAGGCTCG CAGCAGCAGGACCAAGTGGACCGCAACATCAAGTAGGCTCG < 41bp 1 0.593507658007001 1 0.386473745107651 experiment 0.812984683985999 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516812 chrX:70516825 stopgain 1.000 1 34 hm5C_associated_SNPs_41445 0 0 1 0 0 Nucleus 1 0.50023144999731 1 0.999537100005379 hm5C_site_40608 DeepMRMD:1;iRNA_m5C:0.999537100005379 40609 chrX 70516825 70516825 1 + G T UCEC 70516829 + 70516809 70516849 41 GGACCGCAACATCAAGGAGGCTCGTGAGAAGCTGGAGATGG GGACCGCAACATCAAGTAGGCTCGTGAGAAGCTGGAGATGG < 41bp 1 0.631761390828009 1 0.0854798257350922 experiment 0.736477218343981 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70516829 chrX:70516825 stopgain 1.000 1 17 hm5C_associated_SNPs_41448 0 0 1 0 0 Nucleus 1 0.500231643930226 1 0.999536712139548 hm5C_site_40609 DeepMRMD:1;iRNA_m5C:0.999536712139548 40610 chr7 56136261 56136261 1 + G T UCEC 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCAGAGATGGTGACTGGCCTGTGCGGGAGGCGAC < 41bp 1 0.543485870567988 1 0.102236539125443 experiment 0.913028258864023 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136261 nonsynonymous SNV 0.928 5 22 hm5C_associated_SNPs_41449 0 0 1 0 2 Ribosome 1 0.500233352888965 1 0.999533294222071 hm5C_site_40610 DeepMRMD:1;iRNA_m5C:0.999533294222071 40611 chr6 43168205 43168205 1 + G A UCEC 43168200 + 43168180 43168220 41 CTGGGCCAGATCGAAGACCACAGACGAACCCACCAACCCAT CTGGGCCAGATCGAAGACCACAGACAAACCCACCAACCCAT < 41bp 1 0.204977280410012 1 0.509712994098663 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CUL9 ENSG00000112659 CDS Human protein_coding chr6:43168200 chr6:43168205 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_41450 0 0 0 0 1 chromatin 1 0.50023164539104 0.980574011802674 0.999536709217919 hm5C_site_40611 DeepMRMD:0.980574011802674;iRNA_m5C:0.999536709217919 40612 chr6 4935807 4935807 1 + T C UCEC 4935806 + 4935786 4935826 41 GACAACCAACATACAGACATCTGTTACAGGAGTGACTGCCA GACAACCAACATACAGACATCCGTTACAGGAGTGACTGCCA < 41bp 1 0.0629248607670492 1 0.133709281682968 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4935806 chr6:4935807 synonymous SNV . 0 22 hm5C_associated_SNPs_41451 0 0 1 0 1 Cytoplasm 1 0.500231464104167 1 0.999537071791666 hm5C_site_40612 DeepMRMD:1;iRNA_m5C:0.999537071791666 40613 chr1 27631560 27631560 1 + A G UCEC 27631562 + 27631542 27631582 41 GGGAAAAGGAGACCACCAACCTGGTCCGTGTGCTCCAAGGG GGGAAAAGGAGACCACCAGCCTGGTCCGTGTGCTCCAAGGG < 41bp 1 0.58025874478525 1 0.544809281826019 experiment 0.839482510429501 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27631562 chr1:27631560 nonsynonymous SNV 0.997 1 19 hm5C_associated_SNPs_41452 0 0 1 0 2 Cytosol 1 0.50023164392076 0.910381436347962 0.99953671215848 hm5C_site_40613 DeepMRMD:0.910381436347962;iRNA_m5C:0.99953671215848 40614 chr1 27631560 27631560 1 + A G UCEC 27631567 + 27631547 27631587 41 AAGGAGACCACCAACCTGGTCCGTGTGCTCCAAGGGGATGA AAGGAGACCACCAGCCTGGTCCGTGTGCTCCAAGGGGATGA < 41bp 1 0.183867741045642 1 0.0661131739616394 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27631567 chr1:27631560 nonsynonymous SNV 0.997 1 14 hm5C_associated_SNPs_41453 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40614 DeepMRMD:1;iRNA_m5C:0.999536712157815 40615 chr19 11548775 11548775 1 + T C UCEC 11548761 + 11548741 11548781 41 GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGTCAACGA GGCTATAAGCCCCTGTATATCCCCTCCAACCGGGCCAACGA < 41bp 1 0.356049737399799 1 0.215648949146271 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11548761 chr19:11548775 nonsynonymous SNV 0.966 3 35 hm5C_associated_SNPs_41454 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40615 DeepMRMD:1;iRNA_m5C:0.999536712157815 40616 chr10 91465086 91465086 1 + G A UCEC 91465083 + 91465063 91465103 41 TTTTAATCAAGAGGGAGTACCTCGACCATCTTATGTTTTTA TTTTAATCAAGAGGGAGTACCTCAACCATCTTATGTTTTTA < 41bp 1 0.554744525550609 1 0.37250941991806 experiment 0.890510948898781 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91465083 chr10:91465086 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_41455 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_40616 DeepMRMD:1;iRNA_m5C:0.999536712157815 40617 chr8 144732944 144732944 1 + G A UCEC 144732951 + 144732931 144732971 41 GGGAAGGCATTCCGTCATCGCTCAGACCTTATTGAACACCA GGGAAGGCATTCCATCATCGCTCAGACCTTATTGAACACCA < 41bp 1 0.478503368664749 1 0.0967627465724945 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF623 ENSG00000183309 CDS Human protein_coding chr8:144732951 chr8:144732944 nonsynonymous SNV 0.003 1 14 hm5C_associated_SNPs_41456 0 0 1 0 0 cytosol 1 0.500231652468191 1 0.999536695063617 hm5C_site_40617 DeepMRMD:1;iRNA_m5C:0.999536695063617 40618 chrX 129629793 129629793 1 + G A UCEC 129629789 + 129629769 129629809 41 CTTCACTCTTACGTGCACCTCAACGCCGATGAGCTGGAAGC CTTCACTCTTACGTGCACCTCAACACCGATGAGCTGGAAGC < 41bp 1 0.697339974447123 1 0.207268744707108 experiment 0.605320051105753 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM45BP ENSG00000221930 ncRNA_exonic Human transcribed_processed_pseudogene chrX:129629789 chrX:129629793 . . 0 25 hm5C_associated_SNPs_41457 0 0 0 0 0 unknown 1 0.500231643807096 1 0.999536712385809 hm5C_site_40618 DeepMRMD:1;iRNA_m5C:0.999536712385809 40619 chr12 122079119 122079119 1 + C T UCEC 122079102 + 122079082 122079122 41 AACATCGAGGCGGTGAGCAACGTGCACAATCTCAACTCGGT AACATCGAGGCGGTGAGCAACGTGCACAATCTCAACTTGGT < 41bp 1 0.133922231519692 1 0.125593066215515 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ORAI1 ENSG00000182500 CDS Human other chr12:122079102 chr12:122079119 nonsynonymous SNV 0.986 2 38 hm5C_associated_SNPs_41458 0 0 1 0 0 Endoplasmic reticulum 1 0.500231998686251 1 0.999536002627497 hm5C_site_40619 DeepMRMD:1;iRNA_m5C:0.999536002627497 40620 chr16 22271810 22271810 1 + A G UCEC 22271796 + 22271776 22271816 41 TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAACATGGC TGCCCAGATTGGCCAGTGTTCAGTGACCTCGATAGCATGGC < 41bp 1 0.378893504956299 1 0.764914989471436 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22271796 chr16:22271810 nonsynonymous SNV 0.833 1 35 hm5C_associated_SNPs_41459 0 0 1 0 2 Nucleus 1 0.500231869338872 0.470170021057128 0.999536261322256 hm5C_site_40620 DeepMRMD:0.470170021057128;iRNA_m5C:0.999536261322256 40621 chr19 50919735 50919735 1 + G A UCEC 50919728 + 50919708 50919748 41 AGCAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCC AGCAGCAGCTGGCCAAGCCCCTCCTGCACATCTTCGAGCCC < 41bp 1 0.397422721715072 1 0.247885555028915 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919728 chr19:50919735 nonsynonymous SNV 0.997 4 28 hm5C_associated_SNPs_41460 0 0 1 0 2 Nucleus 1 0.500231643790018 1 0.999536712419963 hm5C_site_40621 DeepMRMD:1;iRNA_m5C:0.999536712419963 40622 chr19 50919735 50919735 1 + G A UCEC 50919730 + 50919710 50919750 41 CAGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCCAT CAGCAGCTGGCCAAGCCCCTCCTGCACATCTTCGAGCCCAT < 41bp 1 0.066287248317346 1 0.161419123411179 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919730 chr19:50919735 nonsynonymous SNV 0.997 4 26 hm5C_associated_SNPs_41461 0 0 1 0 2 Nucleus 1 0.500231643919885 1 0.99953671216023 hm5C_site_40622 DeepMRMD:1;iRNA_m5C:0.99953671216023 40623 chr19 50919735 50919735 1 + G A UCEC 50919731 + 50919711 50919751 41 AGCAGCTGGCCAAGCCCCTCCTGCGCATCTTCGAGCCCATC AGCAGCTGGCCAAGCCCCTCCTGCACATCTTCGAGCCCATC < 41bp 1 0.533568122221783 1 0.336264818906784 experiment 0.932863755556433 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLD1 ENSG00000062822;ENSG00000142539 CDS Human other chr19:50919731 chr19:50919735 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_41462 0 0 1 0 2 Nucleus 1 0.500231643921069 1 0.999536712157861 hm5C_site_40623 DeepMRMD:1;iRNA_m5C:0.999536712157861 40624 chr9 4662959 4662959 1 + A G UCEC 4662948 + 4662928 4662968 41 GGGCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGA GGGCTGGTCCGCAGGCGCCGCCCGGCCCACAGCCAGATGGA < 41bp 1 0.516853686370893 1 0.55459064245224 experiment 0.966292627258214 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PLPP6 ENSG00000205808 CDS Human protein_coding chr9:4662948 chr9:4662959 nonsynonymous SNV 0.991 2 32 hm5C_associated_SNPs_41463 0 0 0 0 0 Ribosome 1 0.500231630062403 0.89081871509552 0.999536739875194 hm5C_site_40624 DeepMRMD:0.89081871509552;iRNA_m5C:0.999536739875194 40625 chr9 4662959 4662959 1 + A G UCEC 4662949 + 4662929 4662969 41 GGCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGAC GGCTGGTCCGCAGGCGCCGCCCGGCCCACAGCCAGATGGAC < 41bp 1 0.274097652410927 1 0.771213173866272 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLPP6 ENSG00000205808 CDS Human protein_coding chr9:4662949 chr9:4662959 nonsynonymous SNV 0.991 2 31 hm5C_associated_SNPs_41464 0 0 0 0 0 Ribosome 1 0.500231643921068 0.457573652267456 0.999536712157865 hm5C_site_40625 DeepMRMD:0.457573652267456;iRNA_m5C:0.999536712157865 40626 chr9 4662959 4662959 1 + A G UCEC 4662950 + 4662930 4662970 41 GCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGACA GCTGGTCCGCAGGCGCCGCCCGGCCCACAGCCAGATGGACA < 41bp 1 0.565473257747486 1 0.309985935688019 experiment 0.869053484505027 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLPP6 ENSG00000205808 CDS Human protein_coding chr9:4662950 chr9:4662959 nonsynonymous SNV 0.991 2 30 hm5C_associated_SNPs_41465 0 0 0 0 0 Ribosome 1 0.500231643719746 1 0.999536712560509 hm5C_site_40626 DeepMRMD:1;iRNA_m5C:0.999536712560509 40627 chr10 75871687 75871687 1 + G T UCEC 75871668 + 75871648 75871688 41 CTTCCCGCCATCGACAAAGCCGGGCATCCCAGCCGCTGAGG CTTCCCGCCATCGACAAAGCCGGGCATCCCAGCCGCTGATG < 41bp 1 0.499376355386773 1 0.654867708683014 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871668 chr10:75871687 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_41466 0 0 1 0 1 Nucleus 1 0.500231614784531 0.690264582633972 0.999536770430939 hm5C_site_40627 DeepMRMD:0.690264582633972;iRNA_m5C:0.999536770430939 40628 chr1 26109127 26109127 1 + G A UCEC 26109121 + 26109101 26109141 41 AAGCCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC AAGCCGGTTTCTCTGGGATCCAAGACATGTACAGTAGCACC < 41bp 1 0.585676878082853 1 0.602328181266785 experiment 0.828646243834293 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26109121 chr1:26109127 nonsynonymous SNV 0.797 5 27 hm5C_associated_SNPs_41467 0 0 1 0 2 exosome 1 0.500231644246003 0.79534363746643 0.999536711507993 hm5C_site_40628 DeepMRMD:0.79534363746643;iRNA_m5C:0.999536711507993 40629 chr1 110134773 110134773 1 + A G UCEC 110134762 + 110134742 110134782 41 GAGATCTATACTCACTTCACCTGTGCCACAGACACGAAGAA GAGATCTATACTCACTTCACCTGTGCCACAGGCACGAAGAA < 41bp 1 0.196990518411451 1 0.287428081035614 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GNAI3 ENSG00000065135 CDS Human protein_coding chr1:110134762 chr1:110134773 nonsynonymous SNV 1.000 5 32 hm5C_associated_SNPs_41468 0 0 1 0 0 Cytosol 1 0.500231643696862 1 0.999536712606276 hm5C_site_40629 DeepMRMD:1;iRNA_m5C:0.999536712606276 40630 chr5 72798825 72798825 1 + A G UCEC 72798844 + 72798824 72798864 41 CATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC CGTTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC < 41bp 1 0.642513257359405 1 0.453345626592636 experiment 0.714973485281191 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798844 chr5:72798825 nonsynonymous SNV 1.000 0 2 hm5C_associated_SNPs_41469 0 0 1 0 1 Ribosome 1 0.500231779222004 1 0.999536441555991 hm5C_site_40630 DeepMRMD:1;iRNA_m5C:0.999536441555991 40631 chr20 54970777 54970777 1 + G A UCEC 54970762 + 54970742 54970782 41 CACCCTCGGAGCAGCTCCTGCATCTCATCAAACTCGGTAGA CACCCTCGGAGCAGCTCCTGCATCTCATCAAACTCAGTAGA < 41bp 1 0.164351340970444 1 0.128752917051315 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54970762 chr20:54970777 nonsynonymous SNV 0.916 3 36 hm5C_associated_SNPs_41470 0 0 1 0 1 Cytosol 1 0.500231643920995 1 0.999536712158011 hm5C_site_40631 DeepMRMD:1;iRNA_m5C:0.999536712158011 40632 chr4 6925395 6925395 1 + C T UCEC 6925415 + 6925395 6925435 41 CGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTGCGCGC TGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTGCGCGC < 41bp 1 0.0261706976972784 1 0.0260516107082367 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:6925415 chr4:6925395 synonymous SNV . 0 1 hm5C_associated_SNPs_41472 0 0 1 0 0 Cytosol 1 0.500232229416633 1 0.999535541166734 hm5C_site_40632 DeepMRMD:1;iRNA_m5C:0.999535541166734 40633 chrX 70514348 70514348 1 + G T UCEC 70514364 + 70514344 70514384 41 GACAGATGCAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT GACATATGCAGTGAAGGCTCCTTCCTGCTAACCACGTAAGT < 41bp 1 0.0816942383978632 1 0.12838488817215 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70514364 chrX:70514348 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_41473 0 0 1 0 1 Nucleus 1 0.500231643921088 1 0.999536712157823 hm5C_site_40633 DeepMRMD:1;iRNA_m5C:0.999536712157823 40634 chr12 123346280 123346280 1 + G A UCEC 123346273 + 123346253 123346293 41 CTTGACAAAAAGGATGGCATCTACCCAGCTCAACTCGTGAA CTTGACAAAAAGGATGGCATCTACCCAACTCAACTCGTGAA < 41bp 1 0.174735252761019 1 0.0691380798816681 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HIP1R ENSG00000130787 CDS Human protein_coding chr12:123346273 chr12:123346280 nonsynonymous SNV 0.980 1 28 hm5C_associated_SNPs_41474 0 0 0 0 1 Nucleus 1 0.500231784132763 1 0.999536431734474 hm5C_site_40634 DeepMRMD:1;iRNA_m5C:0.999536431734474 40635 chr11 67378022 67378022 1 + C T UCEC 67378025 + 67378005 67378045 41 AAGCCCCGCCTGAAGCCCCCCTTCCCCGCAGACGTGGGTAA AAGCCCCGCCTGAAGCCTCCCTTCCCCGCAGACGTGGGTAA < 41bp 1 0.163188777514432 1 0.0773984789848328 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378025 chr11:67378022 synonymous SNV . 0 18 hm5C_associated_SNPs_41475 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_40635 DeepMRMD:1;iRNA_m5C:0.999536712157815 40636 chr18 46284714 46284714 1 + C T UCEC 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGTGG < 41bp 1 0.44407557438252 1 0.119130432605743 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284714 nonsynonymous SNV 0.998 4 39 hm5C_associated_SNPs_41476 0 0 0 0 2 Cytosol 1 0.500231629609393 1 0.999536740781214 hm5C_site_40636 DeepMRMD:1;iRNA_m5C:0.999536740781214 40637 chr12 124181003 124181003 1 + A T UCEC 124181019 + 124180999 124181039 41 CAACAGGATGAATAATGTCACGACTTTACATCTTTGGCAAT CAACTGGATGAATAATGTCACGACTTTACATCTTTGGCAAT < 41bp 1 0.253369633941891 1 0.0998455584049225 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124181019 chr12:124181003 nonsynonymous SNV 0.001 3 5 hm5C_associated_SNPs_41477 0 0 1 0 2 Nucleus 1 0.500232472577967 1 0.999535054844066 hm5C_site_40637 DeepMRMD:1;iRNA_m5C:0.999535054844066 40638 chr14 23240646 23240646 1 + C A UCEC 23240645 + 23240625 23240665 41 TTTCTCTTCTCCCCTCAGGTCCTTTACGACAGACCTTTACC TTTCTCTTCTCCCCTCAGGTCATTTACGACAGACCTTTACC < 41bp 1 0.0388017694770571 1 0.104668080806732 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240645 chr14:23240646 nonsynonymous SNV 0.866 4 22 hm5C_associated_SNPs_41478 0 0 1 1 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_40638 DeepMRMD:1;iRNA_m5C:0.999536712157814 40639 chr2 26987226 26987226 1 + G T UCEC 26987239 + 26987219 26987259 41 TGGCCTGGACCAAGTACCAGCTGTTCCTGGCCGGGCTCATG TGGCCTGTACCAAGTACCAGCTGTTCCTGGCCGGGCTCATG < 41bp 1 0.135694118049897 1 0.0987737774848938 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC35F6 ENSG00000213699 CDS Human protein_coding chr2:26987239 chr2:26987226 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_41479 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40639 DeepMRMD:1;iRNA_m5C:0.999536712157815 40640 chr10 75533012 75533012 1 + C T UCEC 75533032 + 75533012 75533052 41 CCACGGCCACCACCGAGGATCCAGAGCTCTTGGCTTTCTTG TCACGGCCACCACCGAGGATCCAGAGCTCTTGGCTTTCTTG < 41bp 1 0.587419647626574 1 0.11345836520195 experiment 0.825160704746853 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FUT11 ENSG00000196968 CDS Human protein_coding chr10:75533032 chr10:75533012 nonsynonymous SNV 0.982 0 1 hm5C_associated_SNPs_41480 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_40640 DeepMRMD:1;iRNA_m5C:0.999536712157815 40641 chr18 13056641 13056641 1 + C A UCEC 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTATGTTGGTACAAACTGTGGAATTGAACCAT < 41bp 1 0.0973238251125987 1 0.135035693645477 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056641 nonsynonymous SNV 0.003 2 12 hm5C_associated_SNPs_41481 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_40641 DeepMRMD:1;iRNA_m5C:0.999536712157816 40642 chr18 13056641 13056641 1 + C A UCEC 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTATGTTGGTACAAACTGTGGAATTGAACCATGGGA < 41bp 1 0.348096618291778 1 0.219852179288864 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056641 nonsynonymous SNV 0.003 2 8 hm5C_associated_SNPs_41482 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40642 DeepMRMD:1;iRNA_m5C:0.999536712157815 40643 chr11 73074857 73074857 1 + C T UCEC 73074840 + 73074820 73074860 41 ATCCGTGACCGCAGGAACAGCATGAAGCTCCAGCATGCGGC ATCCGTGACCGCAGGAACAGCATGAAGCTCCAGCATGTGGC < 41bp 1 0.369180861584954 1 0.249510645866394 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73074840 chr11:73074857 nonsynonymous SNV 0.971 1 38 hm5C_associated_SNPs_41483 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40643 DeepMRMD:1;iRNA_m5C:0.999536712157815 40644 chr6 3152762 3152762 1 + C T UCEC 3152743 + 3152723 3152763 41 CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTTGCG CTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTTGTG < 41bp 1 0.124581273641028 1 0.43380743265152 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BPHL ENSG00000137274 CDS Human protein_coding chr6:3152743 chr6:3152762 nonsynonymous SNV 0.982 4 40 hm5C_associated_SNPs_41484 0 0 1 0 1 Ribosome 1 0.500231638166565 1 0.99953672366687 hm5C_site_40644 DeepMRMD:1;iRNA_m5C:0.99953672366687 40645 chr7 139094314 139094314 1 + C T UCEC 139094319 + 139094299 139094339 41 TGTTTTTAAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAA TGTTTTTAAGAGAGTTGTAGCTGAGAAGCAGGAGAAAAGAA < 41bp 1 0.490981995487283 1 0.15888187289238 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094319 chr7:139094314 synonymous SNV . 0 16 hm5C_associated_SNPs_41485 0 0 1 0 2 unknown 1 0.500232232808768 1 0.999535534382465 hm5C_site_40645 DeepMRMD:1;iRNA_m5C:0.999535534382465 40646 chr16 28847783 28847783 1 + C T UCEC 28847774 + 28847754 28847794 41 CCCACTGCCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCT CCCACTGCCTCCCCAGCTCTCAGTGACCCTGACTGTCTCCT < 41bp 1 0.567874636466745 1 0.454065203666687 experiment 0.86425072706651 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847774 chr16:28847783 synonymous SNV . 0 30 hm5C_associated_SNPs_41486 0 0 1 0 1 Cytosol 1 0.500231643933868 1 0.999536712132265 hm5C_site_40646 DeepMRMD:1;iRNA_m5C:0.999536712132265 40647 chr4 87691042 87691042 1 + T G UCEC 87691057 + 87691037 87691077 41 GCTCTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG GCTCTGTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTG < 41bp 1 0.376372364151901 1 0.688832581043243 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691057 chr4:87691042 nonsynonymous SNV 0.999 4 6 hm5C_associated_SNPs_41487 0 0 1 0 1 Ribosome 1 0.500231643921092 0.622334837913514 0.999536712157815 hm5C_site_40647 DeepMRMD:0.622334837913514;iRNA_m5C:0.999536712157815 40648 chr4 87691042 87691042 1 + T G UCEC 87691060 + 87691040 87691080 41 CTTTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATG CTGTCCTGGACAGCCAGCAGCAGAAAGTGGAAAAATTGATG < 41bp 1 0.226777676387837 1 0.587614595890045 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87691060 chr4:87691042 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_41488 0 0 1 0 1 Ribosome 1 0.500231644660411 0.82477080821991 0.999536710679178 hm5C_site_40648 DeepMRMD:0.82477080821991;iRNA_m5C:0.999536710679178 40649 chr19 7911463 7911463 1 + C T UCEC 7911474 + 7911454 7911494 41 ACTCCTCATCCCAGGAGGCCCTGTCGGCCCCCACCTGCTCC ACTCCTCATTCCAGGAGGCCCTGTCGGCCCCCACCTGCTCC < 41bp 1 0.221081384646666 1 0.0910734236240387 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EVI5L ENSG00000142459 CDS Human protein_coding chr19:7911474 chr19:7911463 nonsynonymous SNV 0.996 2 10 hm5C_associated_SNPs_41489 0 0 1 0 0 Ribosome 1 0.500231643921101 1 0.999536712157799 hm5C_site_40649 DeepMRMD:1;iRNA_m5C:0.999536712157799 40650 chr1 156105746 156105746 1 + C T UCEC 156105730 + 156105710 156105750 41 AAGCTTCGAGACCTGGAGGACTCACTGGCCCGTGAGCGGGA AAGCTTCGAGACCTGGAGGACTCACTGGCCCGTGAGTGGGA < 41bp 1 0.25314447942684 1 0.20429790019989 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105730 chr1:156105746 nonsynonymous SNV 0.998 5 37 hm5C_associated_SNPs_41490 1 0 1 0 1 Cytosol 1 0.500231643863004 1 0.999536712273993 hm5C_site_40650 DeepMRMD:1;iRNA_m5C:0.999536712273993 not specified not specified 40651 chr12 56331270 56331270 1 + G T UCEC 56331284 + 56331264 56331304 41 AGCCTGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT AGCCTGTCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT < 41bp 1 0.204357943866073 1 0.0373035371303558 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56331284 chr12:56331270 nonsynonymous SNV 0.972 0 7 hm5C_associated_SNPs_41491 0 0 0 0 3 Cytosol 1 0.500231643921121 1 0.999536712157759 hm5C_site_40651 DeepMRMD:1;iRNA_m5C:0.999536712157759 40652 chr14 100367271 100367271 1 + G A UCEC 100367289 + 100367269 100367309 41 TTGCCCCCACATGTGCGCATCTGGGATTCTGTGACATTGAA TTACCCCCACATGTGCGCATCTGGGATTCTGTGACATTGAA < 41bp 1 0.487980689750955 1 0.283325552940369 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367289 chr14:100367271 synonymous SNV . 0 3 hm5C_associated_SNPs_41492 0 0 0 0 1 Nucleus 1 0.500235046921436 1 0.999529906157128 hm5C_site_40652 DeepMRMD:1;iRNA_m5C:0.999529906157128 40653 chr17 38142934 38142934 1 + T C UCEC 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTATCTCCAACTCCTCGTGGTCACCTTCATGATGAA < 41bp 1 0.384671790627525 1 0.300720393657684 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142934 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_41493 0 0 1 0 1 Ribosome 1 0.500231511619379 1 0.999536976761242 hm5C_site_40653 DeepMRMD:1;iRNA_m5C:0.999536976761242 40654 chr2 71654038 71654038 1 + T C UCEC 71654019 + 71653999 71654039 41 CAGTGGCTGAAGAACAAGATCTCCTCAAACAGGAACGCTTG CAGTGGCTGAAGAACAAGATCTCCTCAAACAGGAACGCTCG < 41bp 1 0.390049555634314 1 0.30489045381546 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71654019 chr2:71654038 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_41494 0 0 1 0 0 Nucleus 1 0.50023164918101 1 0.999536701637979 hm5C_site_40654 DeepMRMD:1;iRNA_m5C:0.999536701637979 40655 chr2 71654038 71654038 1 + T C UCEC 71654044 + 71654024 71654064 41 CAAACAGGAACGCTTGGTAACTGTGGATGAAATTGGAGAAG CAAACAGGAACGCTCGGTAACTGTGGATGAAATTGGAGAAG < 41bp 1 0.497697793565741 1 0.109614878892899 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71654044 chr2:71654038 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_41495 0 0 1 0 0 Nucleus 1 0.50023164392388 1 0.999536712152239 hm5C_site_40655 DeepMRMD:1;iRNA_m5C:0.999536712152239 40656 chr2 152276748 152276748 1 + G T UCEC 152276742 + 152276722 152276762 41 AATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGG AATTCAAATGGGAGAAGAGGCAGTGATGTGGGCAAAACTGG < 41bp 1 0.341060670776433 1 0.165340811014175 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152276742 chr2:152276748 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_41496 0 0 1 0 1 Nucleus 1 0.500231643920762 1 0.999536712158476 hm5C_site_40656 DeepMRMD:1;iRNA_m5C:0.999536712158476 40657 chr18 9954096 9954096 1 + G T UCEC 9954099 + 9954079 9954119 41 ACATTCGGATAAACCTGGATCAACCTCAACTGCATCCTTCA ACATTCGGATAAACCTGTATCAACCTCAACTGCATCCTTCA < 41bp 1 0.352313147989922 1 0.362146496772766 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VAPA ENSG00000101558 CDS Human protein_coding chr18:9954099 chr18:9954096 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_41497 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40657 DeepMRMD:1;iRNA_m5C:0.999536712157815 40658 chr9 100773654 100773654 1 + G A UCEC 100773653 + 100773633 100773673 41 GTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT GTAGAAGGGGATGAGGACGACAATGAAGTCAGTGAGGAGGT < 41bp 1 0.40013050267634 1 0.316106736660004 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773653 chr9:100773654 nonsynonymous SNV 0.217 0 22 hm5C_associated_SNPs_41498 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_40658 DeepMRMD:1;iRNA_m5C:0.999536712157816 40659 chr9 100773654 100773654 1 + G A UCEC 100773662 + 100773642 100773682 41 GATGAGGACGACGATGAAGTCAGTGAGGAGGTCAGTGCAGC GATGAGGACGACAATGAAGTCAGTGAGGAGGTCAGTGCAGC < 41bp 1 0.606076599473559 1 0.46339163184166 experiment 0.787846801052883 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773662 chr9:100773654 nonsynonymous SNV 0.217 0 13 hm5C_associated_SNPs_41499 0 0 1 0 1 Cytosol 1 0.500231643535091 1 0.999536712929817 hm5C_site_40659 DeepMRMD:1;iRNA_m5C:0.999536712929817 40660 chr19 36221739 36221739 1 + C T UCEC 36221735 + 36221715 36221755 41 TGGAGGCTGCAGAGGAGAACCAGACCATTGTGCACAGCCCC TGGAGGCTGCAGAGGAGAACCAGATCATTGTGCACAGCCCC < 41bp 1 0.236889769986308 1 0.778967499732971 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36221735 chr19:36221739 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_41500 0 0 1 0 1 chromatin 1 0.500231634105631 0.442065000534058 0.999536731788738 hm5C_site_40660 DeepMRMD:0.442065000534058;iRNA_m5C:0.999536731788738 40661 chr7 135312781 135312781 1 + G T UCEC 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCGCCATATTCTCCTC < 41bp 1 0.517873027044991 1 0.112628638744354 experiment 0.964253945910018 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312781 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_41501 0 0 1 1 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40661 DeepMRMD:1;iRNA_m5C:0.999536712157815 40662 chr2 32724749 32724749 1 + C T UCEC 32724730 + 32724710 32724750 41 TATTTCTGCCGTGATAGAATCGGTTACATTTTTAGTGCACC TATTTCTGCCGTGATAGAATCGGTTACATTTTTAGTGCATC < 41bp 1 0.0484950820123808 1 0.332287162542343 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32724730 chr2:32724749 synonymous SNV . 0 40 hm5C_associated_SNPs_41502 0 0 1 0 0 Nucleus 1 0.50023160023865 1 0.999536799522701 hm5C_site_40662 DeepMRMD:1;iRNA_m5C:0.999536799522701 40663 chr6 52288771 52288771 1 + C T UCEC 52288769 + 52288749 52288789 41 AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCT AGCCTTCCACAGAAGTCAGACGTTGAGCTACAGGAACGGCT < 41bp 1 0.0966332022111796 1 0.178291618824005 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288769 chr6:52288771 synonymous SNV . 0 23 hm5C_associated_SNPs_41503 0 0 1 0 1 Cytosol 1 0.50023163965225 1 0.999536720695501 hm5C_site_40663 DeepMRMD:1;iRNA_m5C:0.999536720695501 40664 chrX 69639612 69639612 1 + C A UCEC 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGGATTGAGCTTCTTTAATCCCGTATGTGCCACCCCCAAT < 41bp 1 0.446331024736061 1 0.223783195018768 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639612 synonymous SNV . 0 26 hm5C_associated_SNPs_41504 0 0 1 0 1 chromatin 1 0.500231615806323 1 0.999536768387354 hm5C_site_40664 DeepMRMD:1;iRNA_m5C:0.999536768387354 40665 chr11 117152347 117152347 1 + G T UCEC 117152351 + 117152331 117152371 41 CATATCCAGTTAGTGAGGAACGGAGCCAAGCTGAGCAGCCT CATATCCAGTTAGTGATGAACGGAGCCAAGCTGAGCAGCCT < 41bp 1 0.635386105857949 1 0.797691166400909 experiment 0.729227788284102 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152351 chr11:117152347 nonsynonymous SNV 0.994 4 17 hm5C_associated_SNPs_41505 0 0 1 0 2 chromatin 1 0.500231643921092 0.404617667198182 0.999536712157815 hm5C_site_40665 DeepMRMD:0.404617667198182;iRNA_m5C:0.999536712157815 40666 chr8 9620705 9620705 1 + T G UCEC 9620699 + 9620679 9620719 41 TCACTGTGTTAATCAGGGAACGATTTTGCTGGATCTTGCTC TCACTGTGTTAATCAGGGAACGATTTGGCTGGATCTTGCTC < 41bp 1 0.0767680250466029 1 0.0632745325565338 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9620699 chr8:9620705 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_41507 0 0 1 0 2 Nucleus 1 0.500231601695183 1 0.999536796609633 hm5C_site_40666 DeepMRMD:1;iRNA_m5C:0.999536796609633 40667 chr3 47455570 47455570 1 + C A UCEC 47455586 - 47455566 47455606 41 CATGTCCTTGCCTCCAGGACCTGGGCTGTGGTGCAAGCTTG CATGTCCTTGCCTCCAGGACCTGGGCTGTGGTGCAATCTTG < 41bp 1 0.451896587679536 1 0.17934250831604 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCAP ENSG00000114650 CDS Human protein_coding chr3:47455586 chr3:47455570 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_41508 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40667 DeepMRMD:1;iRNA_m5C:0.999536712157815 40668 chr16 23578376 23578376 1 + G A UCEC 23578358 + 23578338 23578378 41 TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAGAC TAAAAAATGTGGTCAGTGAACCTATCGAAGGACATGAAAAC < 41bp 1 0.0644901525343829 1 0.0718959867954254 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23578358 chr16:23578376 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_41509 0 0 1 0 2 Ribosome 1 0.500231643921009 1 0.999536712157981 hm5C_site_40668 DeepMRMD:1;iRNA_m5C:0.999536712157981 40669 chr10 102824017 102824017 1 + G T UCEC 102824020 + 102824000 102824040 41 TCCCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCA TCCCGCCTTCACCCCCATGGCCCCAGATCGTGTCACATCCA < 41bp 1 0.263681990438085 1 0.264147460460663 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1;KAZALD1 ENSG00000107821 splicing Human protein_coding chr10:102824020 chr10:102824017 . 0.915 0 18 hm5C_associated_SNPs_41510 0 0 1 0 1 unknown 1 0.50023164391636 1 0.999536712167281 hm5C_site_40669 DeepMRMD:1;iRNA_m5C:0.999536712167281 40670 chr10 102824017 102824017 1 + G T UCEC 102824021 + 102824001 102824041 41 CCCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCAT CCCGCCTTCACCCCCATGGCCCCAGATCGTGTCACATCCAT < 41bp 1 0.0950208412253789 1 0.0942524671554565 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1;KAZALD1 ENSG00000107821 splicing Human protein_coding chr10:102824021 chr10:102824017 . 0.915 0 17 hm5C_associated_SNPs_41511 0 0 1 0 1 unknown 1 0.50023164391572 1 0.99953671216856 hm5C_site_40670 DeepMRMD:1;iRNA_m5C:0.99953671216856 40671 chr10 102824017 102824017 1 + G T UCEC 102824022 + 102824002 102824042 41 CCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCATA CCGCCTTCACCCCCATGGCCCCAGATCGTGTCACATCCATA < 41bp 1 0.142662312739317 1 0.0928701758384705 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1;KAZALD1 ENSG00000107821 splicing Human protein_coding chr10:102824022 chr10:102824017 . 0.915 0 16 hm5C_associated_SNPs_41512 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_40671 DeepMRMD:1;iRNA_m5C:0.999536712157815 40672 chr10 102824017 102824017 1 + G T UCEC 102824023 + 102824003 102824043 41 CGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATCCATAT CGCCTTCACCCCCATGGCCCCAGATCGTGTCACATCCATAT < 41bp 1 0.111565092984114 1 0.401343286037445 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KAZALD1;KAZALD1 ENSG00000107821 splicing Human protein_coding chr10:102824023 chr10:102824017 . 0.915 0 15 hm5C_associated_SNPs_41513 0 0 1 0 1 unknown 1 0.500231634583337 1 0.999536730833326 hm5C_site_40672 DeepMRMD:1;iRNA_m5C:0.999536730833326 40673 chr1 114500802 114500802 1 + G A UCEC 114500816 + 114500796 114500836 41 GCACCAGTTCCTGGAGTTGCCCAGCAGGGTGTTTCCTTGCA GCACCAATTCCTGGAGTTGCCCAGCAGGGTGTTTCCTTGCA < 41bp 1 0.330811920889401 1 0.465157687664032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114500816 chr1:114500802 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_41514 0 0 1 0 0 Cytosol 1 0.500231643921141 1 0.999536712157717 hm5C_site_40673 DeepMRMD:1;iRNA_m5C:0.999536712157717 40674 chr10 104160804 104160804 1 + C A UCEC 104160790 + 104160770 104160810 41 GGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA GGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGATGGTCA < 41bp 1 0.0401646063845159 1 0.225600630044937 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160790 chr10:104160804 nonsynonymous SNV 0.993 2 35 hm5C_associated_SNPs_41515 0 0 0 0 1 chromatin 1 0.500231879900762 1 0.999536240198476 hm5C_site_40674 DeepMRMD:1;iRNA_m5C:0.999536240198476 40675 chr3 126751369 126751369 1 + C A UCEC 126751389 + 126751369 126751409 41 CTGGGCAAGGACTCACCCTCCAACAAGCTGCTCTACGCCAA ATGGGCAAGGACTCACCCTCCAACAAGCTGCTCTACGCCAA < 41bp 1 0.478820565841458 1 0.649330139160156 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126751389 chr3:126751369 nonsynonymous SNV 0.996 4 1 hm5C_associated_SNPs_41516 0 0 1 0 1 Ribosome 1 0.500231643921052 0.701339721679688 0.999536712157896 hm5C_site_40675 DeepMRMD:0.701339721679688;iRNA_m5C:0.999536712157896 40676 chr8 22054866 22054866 1 + C T UCEC 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCCGAGGTCATCACCTCCCAGTACAACAATATGCGCG < 41bp 1 0.140815417231682 1 0.283278346061707 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054866 synonymous SNV . 0 34 hm5C_associated_SNPs_41517 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643891558 1 0.999536712216884 hm5C_site_40676 DeepMRMD:1;iRNA_m5C:0.999536712216884 40677 chr19 39215182 39215182 1 + C T UCEC 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGTC < 41bp 1 0.327541380741471 1 0.715404391288757 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215182 nonsynonymous SNV 0.997 0 40 hm5C_associated_SNPs_41518 0 0 1 0 1 Nucleus 1 0.500231643921092 0.569191217422486 0.999536712157815 hm5C_site_40677 DeepMRMD:0.569191217422486;iRNA_m5C:0.999536712157815 40678 chr19 39215182 39215182 1 + C T UCEC 39215169 + 39215149 39215189 41 CGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCCCTGGAT CGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGTCCTGGAT < 41bp 1 0.250810070965464 1 0.0405273735523224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215169 chr19:39215182 nonsynonymous SNV 0.997 0 34 hm5C_associated_SNPs_41519 0 0 1 0 1 Nucleus 1 0.500231643187797 1 0.999536713624406 hm5C_site_40678 DeepMRMD:1;iRNA_m5C:0.999536713624406 40679 chr19 39215182 39215182 1 + C T UCEC 39215191 + 39215171 39215211 41 ATGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGG ATGTTGTGGGGTCCTGGATCCAGACCAAGATGGAGGTGAGG < 41bp 1 0.190237284116017 1 0.488530874252319 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215191 chr19:39215182 nonsynonymous SNV 0.997 0 12 hm5C_associated_SNPs_41521 0 0 1 0 1 Nucleus 1 0.500150802113844 1 0.999698395772312 hm5C_site_40679 DeepMRMD:1;iRNA_m5C:0.999698395772312 40680 chr19 39215182 39215182 1 + C T UCEC 39215195 + 39215175 39215215 41 TGTGGGGCCCTGGATCCAGACCAAGATGGAGGTGAGGCACG TGTGGGGTCCTGGATCCAGACCAAGATGGAGGTGAGGCACG < 41bp 1 0.319047119889314 1 0.499410271644592 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215195 chr19:39215182 nonsynonymous SNV 0.997 0 8 hm5C_associated_SNPs_41522 0 0 1 0 1 Nucleus 1 0.500231380356088 1 0.999537239287824 hm5C_site_40680 DeepMRMD:1;iRNA_m5C:0.999537239287824 40681 chr15 75499562 75499562 1 + C T UCEC 75499548 + 75499528 75499568 41 ATGCCCGGGATGACCTCTCTCTCTATGGAGCATCCCCTGGG ATGCCCGGGATGACCTCTCTCTCTATGGAGCATCTCCTGGG < 41bp 1 0.690797026881195 1 0.916932463645935 experiment 0.618405946237611 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control C15orf39 ENSG00000167173 CDS Human protein_coding chr15:75499548 chr15:75499562 synonymous SNV . 0 35 hm5C_associated_SNPs_41524 0 0 1 0 0 Cytosol 1 0.500231643921161 0.16613507270813 0.999536712157679 hm5C_site_40681 DeepMRMD:0.16613507270813;iRNA_m5C:0.999536712157679 40682 chr14 102478270 102478270 1 + C T UCEC 102478250 + 102478230 102478270 41 ATCACCCAGATCAATCATGGCCTGATGATGGTGGGGCCCTC ATCACCCAGATCAATCATGGCCTGATGATGGTGGGGCCCTT < 41bp 1 0.0903699340929641 1 0.0648582577705383 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478250 chr14:102478270 nonsynonymous SNV 0.994 4 41 hm5C_associated_SNPs_41525 0 0 1 0 1 Cytosol 1 0.500231643921087 1 0.999536712157827 hm5C_site_40682 DeepMRMD:1;iRNA_m5C:0.999536712157827 40683 chr14 102478270 102478270 1 + C T UCEC 102478266 + 102478246 102478286 41 ATGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGC ATGGCCTGATGATGGTGGGGCCCTTGGGAAGTGGGAAGAGC < 41bp 1 0.0134554029229877 1 0.0578262209892273 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478266 chr14:102478270 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_41526 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40683 DeepMRMD:1;iRNA_m5C:0.999536712157815 40684 chr14 102478270 102478270 1 + C T UCEC 102478267 + 102478247 102478287 41 TGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGCA TGGCCTGATGATGGTGGGGCCCTTGGGAAGTGGGAAGAGCA < 41bp 1 0.0115974222937665 1 0.0935302972793579 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478267 chr14:102478270 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_41527 0 0 1 0 1 Cytosol 1 0.500231643923397 1 0.999536712153206 hm5C_site_40684 DeepMRMD:1;iRNA_m5C:0.999536712153206 40685 chr15 63128200 63128200 1 + T G UCEC 63128184 + 63128164 63128204 41 GGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCTTCCA GGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCGTCCA < 41bp 1 0.0725863744594644 1 0.314773499965668 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63128184 chr15:63128200 synonymous SNV . 0 37 hm5C_associated_SNPs_41528 0 0 0 0 1 Nucleus 1 0.500231643371103 1 0.999536713257794 hm5C_site_40685 DeepMRMD:1;iRNA_m5C:0.999536713257794 40686 chr7 5643504 5643504 1 + G T UCEC 5643505 + 5643485 5643525 41 CTGGGACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATC CTGGGACAGGGGACTCAGATCTCTTCCTCATGAAGCTCATC < 41bp 1 0.174449142222863 1 0.199699729681015 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643505 chr7:5643504 nonsynonymous SNV 0.532 2 20 hm5C_associated_SNPs_41529 0 0 1 0 1 Ribosome 1 0.500231643922095 1 0.99953671215581 hm5C_site_40686 DeepMRMD:1;iRNA_m5C:0.99953671215581 40687 chr7 5643504 5643504 1 + G T UCEC 5643510 + 5643490 5643530 41 ACAGGGGACTCAGAGCTCTTCCTCATGAAGCTCATCAACCG ACAGGGGACTCAGATCTCTTCCTCATGAAGCTCATCAACCG < 41bp 1 0.349541277140407 1 0.11724391579628 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5643510 chr7:5643504 nonsynonymous SNV 0.532 2 15 hm5C_associated_SNPs_41530 0 0 1 0 1 Ribosome 1 0.500258112172602 1 0.999483775654796 hm5C_site_40687 DeepMRMD:1;iRNA_m5C:0.999483775654796 40688 chr20 30898889 30898889 1 + G T UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCATAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA < 41bp 1 0.479876882840627 1 0.187575042247772 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350;ENSG00000101350 exonic;splicing Human other chr20:30898904 chr20:30898889 stopgain 1.000 1 6 hm5C_associated_SNPs_41531 0 0 1 0 2 Ribosome 1 0.500231619536915 1 0.999536760926169 hm5C_site_40688 DeepMRMD:1;iRNA_m5C:0.999536760926169 40689 chr9 131247129 131247129 1 + G A UCEC 131247109 + 131247089 131247129 41 CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAG CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAA < 41bp 1 0.415173258826971 1 0.490970343351364 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247109 chr9:131247129 synonymous SNV . 0 41 hm5C_associated_SNPs_41532 0 0 1 0 1 Cytosol 1 0.50023164391322 1 0.999536712173559 hm5C_site_40689 DeepMRMD:1;iRNA_m5C:0.999536712173559 40690 chr22 23615307 23615307 1 + C T UCEC 23615317 + 23615297 23615337 41 ACGAGGAGCACGCTGGTCCTCCATGTAAGTCACAGCGCCCC ACGAGGAGCATGCTGGTCCTCCATGTAAGTCACAGCGCCCC < 41bp 1 0.186510761466516 1 0.0942659974098206 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCR ENSG00000186716 CDS Human protein_coding chr22:23615317 chr22:23615307 nonsynonymous SNV 0.856 4 11 hm5C_associated_SNPs_41533 0 0 1 0 2 Ribosome 1 0.500231643923499 1 0.999536712153001 hm5C_site_40690 DeepMRMD:1;iRNA_m5C:0.999536712153001 40691 chr16 28994592 28994592 1 + G A UCEC 28994609 + 28994589 28994629 41 GGAGCCCCTACCTCATTGGCCTGGTGAGCATTATTTCTTGG GGAACCCCTACCTCATTGGCCTGGTGAGCATTATTTCTTGG < 41bp 1 0.489043440437069 1 0.0635210871696472 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994609 chr16:28994592 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_41534 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40691 DeepMRMD:1;iRNA_m5C:0.999536712157815 40692 chr1 12027052 12027052 1 + G A UCEC 12027067 + 12027047 12027087 41 TGCCCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC TGCCCAGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGC < 41bp 1 0.476372298031344 1 0.0927470624446869 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027067 chr1:12027052 synonymous SNV . 0 6 hm5C_associated_SNPs_41535 0 0 1 0 2 Nucleus 1 0.500231643824873 1 0.999536712350254 hm5C_site_40692 DeepMRMD:1;iRNA_m5C:0.999536712350254 40693 chr2 101622439 101622439 1 + C T UCEC 101622446 + 101622426 101622466 41 TGCCATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAAT TGCCATACCGAATTCGTGTGCGGCTGTCCAGAAAACGTAAT < 41bp 1 0.625927724677077 1 0.229960590600967 experiment 0.748144550645846 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622446 chr2:101622439 synonymous SNV . 0 14 hm5C_associated_SNPs_41537 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40693 DeepMRMD:1;iRNA_m5C:0.999536712157815 40694 chr2 101622439 101622439 1 + C T UCEC 101622449 + 101622429 101622469 41 CATACCGAATCCGTGTGCGGCTGTCCAGAAAACGTAATGAG CATACCGAATTCGTGTGCGGCTGTCCAGAAAACGTAATGAG < 41bp 1 0.190985522832527 1 0.235334932804108 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622449 chr2:101622439 synonymous SNV . 0 11 hm5C_associated_SNPs_41538 0 0 1 0 2 Cytosol 1 0.500231643400677 1 0.999536713198646 hm5C_site_40694 DeepMRMD:1;iRNA_m5C:0.999536713198646 40695 chr1 97771762 97771762 1 + A C UCEC 97771744 - 97771724 97771764 41 TATTGTGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT TAGTGTGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT < 41bp 1 0.586650520012917 1 0.47221451997757 experiment 0.826698959974167 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYD ENSG00000188641 CDS Human protein_coding chr1:97771744 chr1:97771762 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_41540 0 0 0 0 2 cytosol 1 0.500231642965863 1 0.999536714068275 hm5C_site_40695 DeepMRMD:1;iRNA_m5C:0.999536714068275 40696 chr1 39906770 39906770 1 + G A UCEC 39906771 + 39906751 39906791 41 CCTGTGGAGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATT CCTGTGGAGAAACTGAGAAACCTGAAGTGAGGAAGAGCATT < 41bp 1 0.092338135608768 1 0.126137107610703 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39906771 chr1:39906770 synonymous SNV . 0 20 hm5C_associated_SNPs_41542 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643917306 1 0.999536712165388 hm5C_site_40696 DeepMRMD:1;iRNA_m5C:0.999536712165388 40697 chr1 39906770 39906770 1 + G A UCEC 39906772 + 39906752 39906792 41 CTGTGGAGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATTG CTGTGGAGAAACTGAGAAACCTGAAGTGAGGAAGAGCATTG < 41bp 1 0.346439260792863 1 0.26474791765213 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39906772 chr1:39906770 synonymous SNV . 0 19 hm5C_associated_SNPs_41543 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643981206 1 0.999536712037588 hm5C_site_40697 DeepMRMD:1;iRNA_m5C:0.999536712037588 40698 chr1 120286594 120286594 1 + C A UCEC 120286596 + 120286576 120286616 41 CTGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGG CTGGCACGTCATGGGCATATCCTCCTTGCTGCCCAGCCTGG < 41bp 1 0.15156096051655 1 0.112613141536713 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286596 chr1:120286594 synonymous SNV . 0 19 hm5C_associated_SNPs_41544 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40698 DeepMRMD:1;iRNA_m5C:0.999536712157815 40699 chr1 120286594 120286594 1 + C A UCEC 120286597 + 120286577 120286617 41 TGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGA TGGCACGTCATGGGCATATCCTCCTTGCTGCCCAGCCTGGA < 41bp 1 0.659426663158052 1 0.42692819237709 experiment 0.681146673683895 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286597 chr1:120286594 synonymous SNV . 0 18 hm5C_associated_SNPs_41545 0 0 1 0 1 Ribosome 1 0.500192100355656 1 0.999615799288688 hm5C_site_40699 DeepMRMD:1;iRNA_m5C:0.999615799288688 40700 chr1 120286594 120286594 1 + C A UCEC 120286600 + 120286580 120286620 41 CACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGAAGC CACGTCATGGGCATATCCTCCTTGCTGCCCAGCCTGGAAGC < 41bp 1 0.34912027650629 1 0.23743525147438 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286600 chr1:120286594 synonymous SNV . 0 15 hm5C_associated_SNPs_41546 0 0 1 0 1 Ribosome 1 0.500231885653588 1 0.999536228692824 hm5C_site_40700 DeepMRMD:1;iRNA_m5C:0.999536228692824 40701 chr2 202141596 202141596 1 + G A UCEC 202141594 + 202141574 202141614 41 AAAAGCAAACCTCGGGGATACTGTCTGATCATCAACAATCA AAAAGCAAACCTCGGGGATACTATCTGATCATCAACAATCA < 41bp 1 0.197487107734519 1 0.22907418012619 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CASP8 ENSG00000064012 CDS Human protein_coding chr2:202141594 chr2:202141596 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_41547 0 0 1 1 1 Nucleus 1 0.500231643759841 1 0.999536712480317 hm5C_site_40701 DeepMRMD:1;iRNA_m5C:0.999536712480317 40702 chr17 37814072 37814072 1 + C T UCEC 37814079 + 37814059 37814099 41 TCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTG TCCTAGGCTATGCTGTGCTGCGGCTCCGGCACTGGTGGGTG < 41bp 1 0.437839102278451 1 0.447749257087708 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37814079 chr17:37814072 synonymous SNV . 0 14 hm5C_associated_SNPs_41548 0 0 1 0 3 Ribosome 1 0.50023164392109 1 0.999536712157819 hm5C_site_40702 DeepMRMD:1;iRNA_m5C:0.999536712157819 40703 chr7 66563552 66563552 1 + G A UCEC 66563534 + 66563514 66563554 41 ACTGTATTCTCCAGGAGTACCGGGCGTCAAAGCAGAACGCT ACTGTATTCTCCAGGAGTACCGGGCGTCAAAGCAGAACACT < 41bp 1 0.689698790840861 1 0.881344139575958 experiment 0.620602418318279 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66563534 chr7:66563552 nonsynonymous SNV 0.196 3 39 hm5C_associated_SNPs_41549 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643922622 0.237311720848084 0.999536712154756 hm5C_site_40703 DeepMRMD:0.237311720848084;iRNA_m5C:0.999536712154756 40704 chr13 24871544 24871544 1 + G A UCEC 24871549 + 24871529 24871569 41 AATTGATTCATTCTGGGGAGCTGACCAAAATCACTAAGCAA AATTGATTCATTCTGAGGAGCTGACCAAAATCACTAAGCAA < 41bp 1 0.0605526418883323 1 0.194883316755295 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24871549 chr13:24871544 nonsynonymous SNV 0.987 5 16 hm5C_associated_SNPs_41550 0 0 1 0 0 Cytosol 1 0.500231642147645 1 0.999536715704711 hm5C_site_40704 DeepMRMD:1;iRNA_m5C:0.999536715704711 40705 chr1 984707 984707 1 + C T UCEC 984697 + 984677 984717 41 TGGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCAC TGGCACCGCCTGGAGCTGTCCCGGCACTGGTGCCGGGGCAC < 41bp 1 0.232332407778236 1 0.721747994422913 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984697 chr1:984707 nonsynonymous SNV 0.459 1 31 hm5C_associated_SNPs_41551 0 0 1 0 1 Endoplasmic reticulum 1 0.500233036807654 0.556504011154174 0.999533926384692 hm5C_site_40705 DeepMRMD:0.556504011154174;iRNA_m5C:0.999533926384692 40706 chr1 984707 984707 1 + C T UCEC 984701 + 984681 984721 41 ACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCACCCTC ACCGCCTGGAGCTGTCCCGGCACTGGTGCCGGGGCACCCTC < 41bp 1 0.324572393569537 1 0.468052566051483 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984701 chr1:984707 nonsynonymous SNV 0.459 1 27 hm5C_associated_SNPs_41553 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164383017 1 0.99953671233966 hm5C_site_40706 DeepMRMD:1;iRNA_m5C:0.99953671233966 40707 chr1 984707 984707 1 + C T UCEC 984709 + 984689 984729 41 GAGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGA GAGCTGTCCCGGCACTGGTGCCGGGGCACCCTCTCGGTGGA < 41bp 1 0.404431015746866 1 0.739206552505493 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984709 chr1:984707 nonsynonymous SNV 0.459 1 19 hm5C_associated_SNPs_41554 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643844908 0.521586894989014 0.999536712310184 hm5C_site_40707 DeepMRMD:0.521586894989014;iRNA_m5C:0.999536712310184 40708 chr1 984707 984707 1 + C T UCEC 984710 + 984690 984730 41 AGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGAT AGCTGTCCCGGCACTGGTGCCGGGGCACCCTCTCGGTGGAT < 41bp 1 0.613673980765634 1 0.879595994949341 experiment 0.772652038468732 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:984710 chr1:984707 nonsynonymous SNV 0.459 1 18 hm5C_associated_SNPs_41555 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 0.240808010101318 0.999536712157815 hm5C_site_40708 DeepMRMD:0.240808010101318;iRNA_m5C:0.999536712157815 40709 chr3 9776007 9776007 1 + C T UCEC 9776023 + 9776003 9776043 41 AGCACAAGAAAAAGGGGCGCCAGTCACGCCCAGCCAACAAG AGCATAAGAAAAAGGGGCGCCAGTCACGCCCAGCCAACAAG < 41bp 1 0.124191408264172 1 0.211580544710159 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9776023 chr3:9776007 synonymous SNV . 0 5 hm5C_associated_SNPs_41556 0 0 0 0 0 Nucleus 1 0.500231643916999 1 0.999536712166001 hm5C_site_40709 DeepMRMD:1;iRNA_m5C:0.999536712166001 40710 chr11 722469 722469 1 + C A UCEC 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGCAGTGGACTTCCTGCGCGGCCACCTGGTCCC < 41bp 1 0.230683680202474 1 0.151110678911209 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722469 nonsynonymous SNV . 0 12 hm5C_associated_SNPs_41557 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40710 DeepMRMD:1;iRNA_m5C:0.999536712157815 40711 chr14 38679152 38679152 1 + G A UCEC 38679144 + 38679124 38679164 41 TAAACCTGGGCGTGTGGGTGCTATCGCTGCTCGTCATCCTG TAAACCTGGGCGTGTGGGTGCTATCGCTACTCGTCATCCTG < 41bp 1 0.157195542686385 1 0.0437508523464203 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSTR1 ENSG00000139874 CDS Human protein_coding chr14:38679144 chr14:38679152 synonymous SNV . 0 29 hm5C_associated_SNPs_41558 0 0 0 0 0 nucleus 1 0.500231643919988 1 0.999536712160024 hm5C_site_40711 DeepMRMD:1;iRNA_m5C:0.999536712160024 40712 chr8 22429249 22429249 1 + C A UCEC 22429234 + 22429214 22429254 41 TTCCTGTCAACTCCCAGAATCTTGGCACCCCTGGTCCAGCT TTCCTGTCAACTCCCAGAATCTTGGCACCCCTGGTACAGCT < 41bp 1 0.239698286459881 1 0.301255732774734 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429234 chr8:22429249 nonsynonymous SNV 0.002 0 36 hm5C_associated_SNPs_41559 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_40712 DeepMRMD:1;iRNA_m5C:0.999536712157815 40713 chr9 131198061 131198061 1 + G A UCEC 131198051 + 131198031 131198071 41 GCTCAGTGACACGGAGACATCCTCTCCATGGGATGATGACA GCTCAGTGACACGGAGACATCCTCTCCATGAGATGATGACA < 41bp 1 0.0494709626372756 1 0.0510405898094177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131198051 chr9:131198061 stopgain 0.965 1 31 hm5C_associated_SNPs_41560 0 0 1 0 0 chromatin 1 0.50023163279931 1 0.99953673440138 hm5C_site_40713 DeepMRMD:1;iRNA_m5C:0.99953673440138 40714 chr9 131198061 131198061 1 + G A UCEC 131198054 + 131198034 131198074 41 CAGTGACACGGAGACATCCTCTCCATGGGATGATGACAGCG CAGTGACACGGAGACATCCTCTCCATGAGATGATGACAGCG < 41bp 1 0.667677652547405 1 0.949862003326416 experiment 0.664644694905191 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CERCAM ENSG00000167123 CDS Human protein_coding chr9:131198054 chr9:131198061 stopgain 0.965 1 28 hm5C_associated_SNPs_41561 0 0 1 0 0 chromatin 1 0.50022885480491 0.100275993347168 0.999542290390179 hm5C_site_40714 DeepMRMD:0.100275993347168;iRNA_m5C:0.999542290390179 40715 chrX 107821186 107821186 1 + C A UCEC 107821198 + 107821178 107821218 41 TTAGGGCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGG TTAGGGCCATCCTGGTCCACCAGGACTTCCAGGACCTAAGG < 41bp 1 0.47631048631492 1 0.518548369407654 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821198 chrX:107821186 nonsynonymous SNV 0.982 2 9 hm5C_associated_SNPs_41562 0 0 1 0 2 Ribosome 1 0.500231643921092 0.962903261184692 0.999536712157815 hm5C_site_40715 DeepMRMD:0.962903261184692;iRNA_m5C:0.999536712157815 40716 chrX 107821186 107821186 1 + C A UCEC 107821203 + 107821183 107821223 41 GCCCTCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT GCCATCCTGGTCCACCAGGACTTCCAGGACCTAAGGTAATT < 41bp 1 0.0324513711327841 1 0.0360987782478333 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107821203 chrX:107821186 nonsynonymous SNV 0.982 2 4 hm5C_associated_SNPs_41563 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_40716 DeepMRMD:1;iRNA_m5C:0.999536712157815 40717 chr19 35828871 35828871 1 + T C UCEC 35828874 + 35828854 35828894 41 GAAGTACTGCTGTCAGGTCTCCAATGACGTGGGCCCGGGAA GAAGTACTGCTGTCAGGCCTCCAATGACGTGGGCCCGGGAA < 41bp 1 0.215782572047144 1 0.747066080570221 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD22 ENSG00000012124 CDS Human protein_coding chr19:35828874 chr19:35828871 nonsynonymous SNV 0.011 0 18 hm5C_associated_SNPs_41564 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921094 0.505867838859558 0.999536712157813 hm5C_site_40717 DeepMRMD:0.505867838859558;iRNA_m5C:0.999536712157813 40718 chr17 4623696 4623696 1 + C T UCEC 4623704 + 4623684 4623724 41 CCAGGGATGTCTCTGTGGAGCTGCCTTTTGTTCTTATGCAC CCAGGGATGTCTTTGTGGAGCTGCCTTTTGTTCTTATGCAC < 41bp 1 0.362235229282773 1 0.0707744657993317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4623704 chr17:4623696 nonsynonymous SNV 0.992 2 13 hm5C_associated_SNPs_41566 0 0 1 0 2 Cytosol 1 0.500231647169475 1 0.999536705661051 hm5C_site_40718 DeepMRMD:1;iRNA_m5C:0.999536705661051 40719 chr19 42814476 42814476 1 + C A UCEC 42814475 + 42814455 42814495 41 ACACCCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCA ACACCCTTCTGGATTAATAGCACTGATCAAGTCCCAGAGCA < 41bp 1 0.371266800159786 1 0.273140966892242 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814475 chr19:42814476 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_41567 0 0 0 4 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40719 DeepMRMD:1;iRNA_m5C:0.999536712157815 40720 chr19 3533342 3533342 1 + C A UCEC 3533341 + 3533321 3533361 41 GATCCTTGTCTGGAAGTACCCCTCCCTGACCCAGGTGGCCA GATCCTTGTCTGGAAGTACCCATCCCTGACCCAGGTGGCCA < 41bp 1 0.243442436774792 1 0.222057521343231 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3533341 chr19:3533342 synonymous SNV . 0 22 hm5C_associated_SNPs_41568 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40720 DeepMRMD:1;iRNA_m5C:0.999536712157815 40721 chr20 47691917 47691917 1 + G T UCEC 47691921 + 47691901 47691941 41 ATGCAAGTTTTTTGAGGGACCTGTGACAGGAATCTTCTCTG ATGCAAGTTTTTTGAGTGACCTGTGACAGGAATCTTCTCTG < 41bp 1 0.61715408395591 1 0.256319642066956 experiment 0.765691832088181 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CSE1L ENSG00000124207 CDS Human protein_coding chr20:47691921 chr20:47691917 stopgain 0.994 1 17 hm5C_associated_SNPs_41569 0 0 1 0 1 Nucleus 1 0.500227898772662 1 0.999544202454676 hm5C_site_40721 DeepMRMD:1;iRNA_m5C:0.999544202454676 40722 chr12 62946735 62946735 1 + G A UCEC 62946733 + 62946713 62946753 41 TAAATAAGGAAGAGGCAGCACAGCAAAAGCAGGCAGAAGAG TAAATAAGGAAGAGGCAGCACAACAAAAGCAGGCAGAAGAG < 41bp 1 0.573573565239011 1 0.457842528820038 experiment 0.852852869521977 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MON2 ENSG00000061987 CDS Human protein_coding chr12:62946733 chr12:62946735 synonymous SNV . 0 23 hm5C_associated_SNPs_41570 0 0 0 0 1 Nucleus 1 0.500231646662297 1 0.999536706675406 hm5C_site_40722 DeepMRMD:1;iRNA_m5C:0.999536706675406 40723 chrX 70779269 70779269 1 + A C UCEC 70779251 + 70779231 70779271 41 CTTATGCAGTCTATTCCAGGCATGCACAATCCTGATAAATT CTTATGCAGTCTATTCCAGGCATGCACAATCCTGATAACTT < 41bp 1 0.0837095008632509 1 0.0560456216335297 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70779251 chrX:70779269 nonsynonymous SNV 0.997 1 39 hm5C_associated_SNPs_41571 0 0 1 0 1 Nucleus 1 0.500231643979213 1 0.999536712041574 hm5C_site_40723 DeepMRMD:1;iRNA_m5C:0.999536712041574 40724 chr12 57627877 57627877 1 + G A UCEC 57627865 + 57627845 57627885 41 TTTATAGATGAAGGGGTCAACATTGGCTTAGAGGTGAAGAG TTTATAGATGAAGGGGTCAACATTGGCTTAGAAGTGAAGAG < 41bp 1 0.246316259426188 1 0.17951437830925 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627865 chr12:57627877 synonymous SNV . 0 33 hm5C_associated_SNPs_41572 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40724 DeepMRMD:1;iRNA_m5C:0.999536712157815 40725 chr11 61631197 61631197 1 + G A UCEC 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CAGCCACCTGCAACATGGAGCAGTCCTTCTTCAACGACTGG < 41bp 1 0.0295662465776557 1 0.300368010997772 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631197 nonsynonymous SNV 0.993 3 15 hm5C_associated_SNPs_41573 0 0 1 0 2 Ribosome 1 0.500232351041948 1 0.999535297916105 hm5C_site_40725 DeepMRMD:1;iRNA_m5C:0.999535297916105 40726 chr3 111835675 111835675 1 + C A UCEC 111835672 + 111835652 111835692 41 TGGCTCTAAGCCCAGTAAAACAGCTCCCGAGCACTGCTTCA TGGCTCTAAGCCCAGTAAAACAGATCCCGAGCACTGCTTCA < 41bp 1 0.413351401684996 1 0.294085025787354 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C3orf52 ENSG00000114529 CDS Human protein_coding chr3:111835672 chr3:111835675 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_41574 0 0 0 0 0 Ribosome 1 0.500231643792154 1 0.999536712415692 hm5C_site_40726 DeepMRMD:1;iRNA_m5C:0.999536712415692 40727 chr3 127775660 127775660 1 + C T UCEC 127775667 + 127775647 127775687 41 CCAAAAGACCGAGCTCTCTTCAACGGAGCCCAAAAGTGTAA CCAAAAGACCGAGTTCTCTTCAACGGAGCCCAAAAGTGTAA < 41bp 1 0.497566081416457 1 0.183895885944366 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC61A1 ENSG00000058262 CDS Human protein_coding chr3:127775667 chr3:127775660 nonsynonymous SNV 0.996 1 14 hm5C_associated_SNPs_41575 0 0 1 0 0 Ribosome 1 0.500231643919076 1 0.999536712161849 hm5C_site_40727 DeepMRMD:1;iRNA_m5C:0.999536712161849 40728 chr7 130021011 130021011 1 + G A UCEC 130021005 + 130020985 130021025 41 AAGGTGAAGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAG AAGGTGAAGGAGCTGGAGGACCTGGAACACCTGCAGGTCAG < 41bp 1 0.405340638648513 1 0.207894921302795 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021005 chr7:130021011 synonymous SNV . 0 27 hm5C_associated_SNPs_41576 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40728 DeepMRMD:1;iRNA_m5C:0.999536712157815 40729 chr7 130021011 130021011 1 + G A UCEC 130021012 + 130020992 130021032 41 AGGAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGG AGGAGCTGGAGGACCTGGAACACCTGCAGGTCAGAAGAGGG < 41bp 1 0.327348117243562 1 0.387093096971512 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021012 chr7:130021011 synonymous SNV . 0 20 hm5C_associated_SNPs_41577 0 0 0 0 2 Endoplasmic reticulum 1 0.500232030240674 1 0.999535939518651 hm5C_site_40729 DeepMRMD:1;iRNA_m5C:0.999535939518651 40730 chr7 130021011 130021011 1 + G A UCEC 130021014 + 130020994 130021034 41 GAGCTGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGA GAGCTGGAGGACCTGGAACACCTGCAGGTCAGAAGAGGGGA < 41bp 1 0.1973896831203 1 0.212895452976227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021014 chr7:130021011 synonymous SNV . 0 18 hm5C_associated_SNPs_41578 0 0 0 0 2 Endoplasmic reticulum 1 0.500231642700038 1 0.999536714599925 hm5C_site_40730 DeepMRMD:1;iRNA_m5C:0.999536714599925 40731 chr7 130021011 130021011 1 + G A UCEC 130021018 + 130020998 130021038 41 TGGAGGACCTGGAGCACCTGCAGGTCAGAAGAGGGGAGAAG TGGAGGACCTGGAACACCTGCAGGTCAGAAGAGGGGAGAAG < 41bp 1 0.563486301922024 1 0.779494643211365 experiment 0.873027396155952 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021018 chr7:130021011 synonymous SNV . 0 14 hm5C_associated_SNPs_41579 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643264005 0.44101071357727 0.99953671347199 hm5C_site_40731 DeepMRMD:0.44101071357727;iRNA_m5C:0.99953671347199 40732 chrX 129063352 129063352 1 + T C UCEC 129063370 + 129063350 129063390 41 ATTTGAAAGGACCATCCAGACCCCCATAGGATCCACATGGA ATCTGAAAGGACCATCCAGACCCCCATAGGATCCACATGGA < 41bp 1 0.309964994966074 1 0.0712369978427887 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP14A ENSG00000156697 CDS Human protein_coding chrX:129063370 chrX:129063352 nonsynonymous SNV 0.997 4 3 hm5C_associated_SNPs_41580 0 0 1 0 1 Cytosol 1 0.500231644034904 1 0.999536711930192 hm5C_site_40732 DeepMRMD:1;iRNA_m5C:0.999536711930192 40733 chr5 148577861 148577861 1 + C A UCEC 148577870 + 148577850 148577890 41 TACCAGCAACTCTATGGCACCCGCTGTGACAGCTGCCGGGA TACCAGCAACTATATGGCACCCGCTGTGACAGCTGCCGGGA < 41bp 1 0.311147778030995 1 0.336772620677948 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148577870 chr5:148577861 synonymous SNV . 0 12 hm5C_associated_SNPs_41581 0 0 0 0 1 nucleus 1 0.500231643935879 1 0.999536712128242 hm5C_site_40733 DeepMRMD:1;iRNA_m5C:0.999536712128242 40734 chr4 170616784 170616784 1 + G A UCEC 170616800 + 170616780 170616820 41 AGCTGCAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG AGCTACAGGGGTTTCTGTAGCTTTTGGTGCACCAATTGGAG < 41bp 1 0.126729130824577 1 0.0792041122913361 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170616800 chr4:170616784 nonsynonymous SNV 0.993 5 5 hm5C_associated_SNPs_41582 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40734 DeepMRMD:1;iRNA_m5C:0.999536712157815 40735 chr1 28862489 28862489 1 + C A UCEC 28862499 + 28862479 28862519 41 TTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTC TTGCCATCTCACATGAGGGCCACGTGTACGGCTTCGGCCTC < 41bp 1 0.590336776891955 1 0.0876669883728027 experiment 0.819326446216091 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862499 chr1:28862489 synonymous SNV . 0 11 hm5C_associated_SNPs_41583 0 0 1 0 1 Ribosome 1 0.500231643993473 1 0.999536712013055 hm5C_site_40735 DeepMRMD:1;iRNA_m5C:0.999536712013055 40736 chr11 126213248 126213248 1 + G T UCEC 126213246 + 126213226 126213266 41 ATCTGCCATCGCCGGGGCATCAGATCCCTACGCGACCTTAC ATCTGCCATCGCCGGGGCATCATATCCCTACGCGACCTTAC < 41bp 1 0.156998049025372 1 0.378813177347183 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DCPS ENSG00000110063 CDS Human protein_coding chr11:126213246 chr11:126213248 nonsynonymous SNV 0.841 2 23 hm5C_associated_SNPs_41584 0 0 1 0 2 Ribosome 1 0.500231643941634 1 0.999536712116733 hm5C_site_40736 DeepMRMD:1;iRNA_m5C:0.999536712116733 40737 chr10 134219536 134219536 1 + T C UCEC 134219517 + 134219497 134219537 41 TCCATGGTTTTCCTTGGTGGCCGGCGCGTGTTCTTGACATC TCCATGGTTTTCCTTGGTGGCCGGCGCGTGTTCTTGACACC < 41bp 1 0.166707321220772 1 0.509537875652313 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PWWP2B ENSG00000171813 CDS Human protein_coding chr10:134219517 chr10:134219536 nonsynonymous SNV 0.987 1 40 hm5C_associated_SNPs_41585 0 0 1 0 0 chromatin 1 0.500231257886208 0.980924248695374 0.999537484227584 hm5C_site_40737 DeepMRMD:0.980924248695374;iRNA_m5C:0.999537484227584 40738 chr8 23114073 23114073 1 + G A UCEC 23114068 + 23114048 23114088 41 ATGCAGAGTGAACAGCTTCTCTCACGCAAAGTGGAGTCCTT ATGCAGAGTGAACAGCTTCTCTCACACAAAGTGGAGTCCTT < 41bp 1 0.343685636303097 1 0.138097196817398 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23114068 chr8:23114073 nonsynonymous SNV 0.833 2 26 hm5C_associated_SNPs_41586 0 0 1 0 1 Ribosome 1 0.500231644873235 1 0.999536710253531 hm5C_site_40738 DeepMRMD:1;iRNA_m5C:0.999536710253531 40739 chr8 23114073 23114073 1 + G A UCEC 23114070 + 23114050 23114090 41 GCAGAGTGAACAGCTTCTCTCACGCAAAGTGGAGTCCTTAT GCAGAGTGAACAGCTTCTCTCACACAAAGTGGAGTCCTTAT < 41bp 1 0.315099713242259 1 0.0565425157546997 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23114070 chr8:23114073 nonsynonymous SNV 0.833 2 24 hm5C_associated_SNPs_41587 0 0 1 0 1 Ribosome 1 0.500233312351669 1 0.999533375296662 hm5C_site_40739 DeepMRMD:1;iRNA_m5C:0.999533375296662 40740 chr1 183091301 183091301 1 + C T UCEC 183091283 + 183091263 183091303 41 GGAGATTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTG GGAGATTCAACTGCAGGCACCTCCTCCGATTGCCAACCTTG < 41bp 1 0.0990060416719981 1 0.115908592939377 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091283 chr1:183091301 synonymous SNV . 0 39 hm5C_associated_SNPs_41588 0 0 1 0 1 Ribosome 1 0.500231643959583 1 0.999536712080834 hm5C_site_40740 DeepMRMD:1;iRNA_m5C:0.999536712080834 40741 chr1 183091301 183091301 1 + C T UCEC 183091288 + 183091268 183091308 41 TTCAACTGCAGGCACCTCCTCCGATTGCCAACCCTGTCCGT TTCAACTGCAGGCACCTCCTCCGATTGCCAACCTTGTCCGT < 41bp 1 0.188450477108928 1 0.270143985748291 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183091288 chr1:183091301 synonymous SNV . 0 34 hm5C_associated_SNPs_41589 0 0 1 0 1 Ribosome 1 0.500231639941527 1 0.999536720116945 hm5C_site_40741 DeepMRMD:1;iRNA_m5C:0.999536720116945 40742 chr6 34730433 34730433 1 + A G UCEC 34730453 + 34730433 34730473 41 ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC GTCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC < 41bp 1 0.632518846142581 1 0.802953362464905 experiment 0.734962307714838 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRPC ENSG00000124562 CDS Human protein_coding chr6:34730453 chr6:34730433 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_41590 0 0 1 0 2 Ribosome 1 0.500231655004981 0.39409327507019 0.999536689990038 hm5C_site_40742 DeepMRMD:0.39409327507019;iRNA_m5C:0.999536689990038 40743 chr6 106555105 106555105 1 + G A UCEC 106555109 + 106555089 106555129 41 AGTGACAATGCTGACCGGCTCGAGGACGTGGAGGATGACAT AGTGACAATGCTGACCAGCTCGAGGACGTGGAGGATGACAT < 41bp 1 0.603255751776661 1 0.827918648719788 experiment 0.793488496446677 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106555109 chr6:106555105 nonsynonymous SNV 0.937 1 17 hm5C_associated_SNPs_41591 0 0 0 0 0 cytosol 1 0.500231636479972 0.344162702560424 0.999536727040055 hm5C_site_40743 DeepMRMD:0.344162702560424;iRNA_m5C:0.999536727040055 40744 chr12 57909064 57909064 1 + G T UCEC 57909051 + 57909031 57909071 41 AGGCCCAGCTGCAGCTCCCACCTCCAGCCTGCAGTATCCTG AGGCCCAGCTGCAGCTCCCACCTCCAGCCTGCATTATCCTG < 41bp 1 0.0585198460811178 1 0.0662634670734406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57909051 chr12:57909064 nonsynonymous SNV 0.827 0 34 hm5C_associated_SNPs_41592 0 0 1 2 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40744 DeepMRMD:1;iRNA_m5C:0.999536712157815 40745 chr16 842501 842501 1 + G T UCEC 842482 + 842462 842502 41 CATCCTGAACCGCAAGGGGCCACAGGAGGTGGGGCCACAGG CATCCTGAACCGCAAGGGGCCACAGGAGGTGGGGCCACATG < 41bp 1 0.528750067951064 1 0.288609385490417 experiment 0.942499864097872 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842482 chr16:842501 nonsynonymous SNV 0.001 1 40 hm5C_associated_SNPs_41593 0 0 1 0 2 Nucleus 1 0.500231753252352 1 0.999536493495295 hm5C_site_40745 DeepMRMD:1;iRNA_m5C:0.999536493495295 40746 chr5 141364476 141364476 1 + C T UCEC 141364483 + 141364463 141364503 41 ACATTTCAATGACCCTGGTTCACCATGTTTTAACCGGTATG ACATTTCAATGACTCTGGTTCACCATGTTTTAACCGGTATG < 41bp 1 0.660144685692038 1 0.400575697422028 experiment 0.679710628615923 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141364483 chr5:141364476 nonsynonymous SNV 0.257 1 14 hm5C_associated_SNPs_41594 0 0 1 0 1 Ribosome 1 0.500231643919891 1 0.999536712160218 hm5C_site_40746 DeepMRMD:1;iRNA_m5C:0.999536712160218 40747 chr5 34824168 34824168 1 + C T UCEC 34824175 + 34824155 34824195 41 GATAACCACGCTGCGGACTGCAGCAAAAGAGATGGAAGAAA GATAACCACGCTGTGGACTGCAGCAAAAGAGATGGAAGAAA < 41bp 1 0.509224979688894 1 0.251074343919754 experiment 0.981550040622211 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAI14 ENSG00000039560 CDS Human protein_coding chr5:34824175 chr5:34824168 nonsynonymous SNV 0.480 3 14 hm5C_associated_SNPs_41596 0 0 1 0 0 Cytosol 1 0.500231711831814 1 0.999536576336372 hm5C_site_40747 DeepMRMD:1;iRNA_m5C:0.999536576336372 40748 chr5 34824168 34824168 1 + C T UCEC 34824178 + 34824158 34824198 41 AACCACGCTGCGGACTGCAGCAAAAGAGATGGAAGAAAAAA AACCACGCTGTGGACTGCAGCAAAAGAGATGGAAGAAAAAA < 41bp 1 0.407186715306355 1 0.533422470092773 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAI14 ENSG00000039560 CDS Human protein_coding chr5:34824178 chr5:34824168 nonsynonymous SNV 0.480 3 11 hm5C_associated_SNPs_41597 0 0 1 0 0 Cytosol 1 0.500234163689062 0.933155059814454 0.999531672621875 hm5C_site_40748 DeepMRMD:0.933155059814454;iRNA_m5C:0.999531672621875 40749 chr15 74920375 74920375 1 + G T UCEC 74920360 + 74920340 74920380 41 TGGAGCATTGGCTGCATTCTCTTTGAGTACTACCGGGGCTT TGGAGCATTGGCTGCATTCTCTTTGAGTACTACCGTGGCTT < 41bp 1 0.312176536393928 1 0.299371123313904 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74920360 chr15:74920375 synonymous SNV . 0 36 hm5C_associated_SNPs_41598 0 0 1 0 2 Nucleus 1 0.500232461757236 1 0.999535076485528 hm5C_site_40749 DeepMRMD:1;iRNA_m5C:0.999535076485528 40750 chr11 9462065 9462065 1 + C A UCEC 9462070 + 9462050 9462090 41 ATTTGGAGATTCTGGCTAAGCAGGCTGGTGAAGATGGAGAT ATTTGGAGATTCTGGATAAGCAGGCTGGTGAAGATGGAGAT < 41bp 1 0.696344376726001 1 0.678632974624634 experiment 0.607311246547999 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9462070 chr11:9462065 nonsynonymous SNV 0.998 1 16 hm5C_associated_SNPs_41599 0 0 1 0 1 Cytosol 1 0.500231643954426 0.642734050750732 0.999536712091148 hm5C_site_40750 DeepMRMD:0.642734050750732;iRNA_m5C:0.999536712091148 40751 chr11 57574424 57574424 1 + G T UCEC 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACGATACAGTTGATTTCCCTAAAAGAACGAGTCCAGCTC < 41bp 1 0.622967306005319 1 0.499224573373795 experiment 0.754065387989361 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574424 synonymous SNV . 0 13 hm5C_associated_SNPs_41600 0 0 1 0 2 Nucleus 1 0.500231644834299 1 0.999536710331401 hm5C_site_40751 DeepMRMD:1;iRNA_m5C:0.999536710331401 40752 chr12 64810528 64810528 1 + A G UCEC 64810521 + 64810501 64810541 41 GCTTTCAAGTACTGGAACATCAAGTTAAATACAAGTAAGGC GCTTTCAAGTACTGGAACATCAAGTTAGATACAAGTAAGGC < 41bp 1 0.570172693045279 1 0.382301241159439 experiment 0.859654613909443 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XPOT ENSG00000184575 CDS Human protein_coding chr12:64810521 chr12:64810528 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_41601 0 0 1 0 2 Ribosome 1 0.500231642066808 1 0.999536715866383 hm5C_site_40752 DeepMRMD:1;iRNA_m5C:0.999536715866383 40753 chr10 128830505 128830505 1 + G A UCEC 128830517 + 128830497 128830537 41 AGCATGCAGAGCCTTGGGAGCTGCACCATTAGCAAGGACTC AGCATGCAAAGCCTTGGGAGCTGCACCATTAGCAAGGACTC < 41bp 1 0.391610416195091 1 0.198745101690292 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128830517 chr10:128830505 synonymous SNV . 0 9 hm5C_associated_SNPs_41602 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_40753 DeepMRMD:1;iRNA_m5C:0.999536712157815 40754 chr11 108206584 108206584 1 + C A UCEC 108206601 + 108206581 108206621 41 GACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT GACATGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGAT < 41bp 1 0.170059511085498 1 0.254177987575531 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATM ENSG00000149311 CDS Human protein_coding chr11:108206601 chr11:108206584 nonsynonymous SNV 1.000 5 4 hm5C_associated_SNPs_41603 0 0 1 0 1 Nucleus 1 0.500231661770688 1 0.999536676458624 hm5C_site_40754 DeepMRMD:1;iRNA_m5C:0.999536676458624 40755 chrX 57405176 57405176 1 + C A UCEC 57405181 + 57405161 57405201 41 CGTTATGCTGAAGACCTGGCCCCCATGTTGAAGGTCATGGC CGTTATGCTGAAGACATGGCCCCCATGTTGAAGGTCATGGC < 41bp 1 0.54538005393676 1 0.175329834222794 experiment 0.909239892126479 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405181 chrX:57405176 nonsynonymous SNV 0.755 3 16 hm5C_associated_SNPs_41604 0 0 0 0 2 nucleus 1 0.500255174749654 1 0.999489650500691 hm5C_site_40755 DeepMRMD:1;iRNA_m5C:0.999489650500691 40756 chr6 42974218 42974218 1 + G A UCEC 42974203 + 42974183 42974223 41 GGTGACTTGTTTGACCAGGCCCAGCCGCAGCCCCAGCCCCA GGTGACTTGTTTGACCAGGCCCAGCCGCAGCCCCAACCCCA < 41bp 1 0.251659579550163 1 0.0689936876296997 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974203 chr6:42974218 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_41605 0 0 0 0 2 Ribosome 1 0.500231648729462 1 0.999536702541076 hm5C_site_40756 DeepMRMD:1;iRNA_m5C:0.999536702541076 40757 chrX 53223813 53223813 1 + G T UCEC 53223826 - 53223806 53223846 41 GCCCAGTCCACTGGCATCATCGAGCACGGCCTCCTCTACAA GCCCAGTCCACTGGCATCATCGAGCACGGCCTCATCTACAA < 41bp 1 0.545911122923069 1 0.918447375297546 experiment 0.908177754153862 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KDM5C ENSG00000126012 CDS Human protein_coding chrX:53223826 chrX:53223813 synonymous SNV . 0 34 hm5C_associated_SNPs_41606 0 0 1 0 0 Nucleus 1 0.50023164449487 0.163105249404908 0.99953671101026 hm5C_site_40757 DeepMRMD:0.163105249404908;iRNA_m5C:0.99953671101026 40758 chr20 3891319 3891319 1 + G A UCEC 3891322 + 3891302 3891342 41 TTCAATGGACGGTCACAGTGCTATTACTTTGAAAACCCTGC TTCAATGGACGGTCACAATGCTATTACTTTGAAAACCCTGC < 41bp 1 0.10457892035167 1 0.162709653377533 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PANK2 ENSG00000125779 CDS Human protein_coding chr20:3891322 chr20:3891319 synonymous SNV . 0 18 hm5C_associated_SNPs_41607 0 0 1 0 1 Ribosome 1 0.500231426263716 1 0.999537147472568 hm5C_site_40758 DeepMRMD:1;iRNA_m5C:0.999537147472568 40759 chr8 68074128 68074128 1 + G T UCEC 68074141 + 68074121 68074161 41 GTTGACAGCATCATACGTTCCTTTATTCATGTATGTACTTT GTTGACATCATCATACGTTCCTTTATTCATGTATGTACTTT < 41bp 1 0.200524107656767 1 0.0252571403980255 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68074141 chr8:68074128 nonsynonymous SNV 0.999 3 8 hm5C_associated_SNPs_41608 0 0 1 0 2 Cytosol 1 0.500231696810505 1 0.999536606378989 hm5C_site_40759 DeepMRMD:1;iRNA_m5C:0.999536606378989 40760 chr16 2122332 2122332 1 + G A UCEC 2122321 + 2122301 2122341 41 TAAAGTGCTCATCTTTACTTCCCCTTGCAGTGTGGACCAGC TAAAGTGCTCATCTTTACTTCCCCTTGCAGTATGGACCAGC < 41bp 1 0.104520724338193 1 0.0332131087779999 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122321 chr16:2122332 nonsynonymous SNV 0.871 2 32 hm5C_associated_SNPs_41609 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921311 1 0.999536712157377 hm5C_site_40760 DeepMRMD:1;iRNA_m5C:0.999536712157377 40761 chr20 39795167 39795167 1 + C T UCEC 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGTG < 41bp 1 0.375812616834464 1 0.166874259710312 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795167 synonymous SNV . 0 40 hm5C_associated_SNPs_41610 0 0 1 0 2 Cytosol 1 0.500231645431204 1 0.999536709137592 hm5C_site_40761 DeepMRMD:1;iRNA_m5C:0.999536709137592 40762 chr6 33653602 33653602 1 + C T UCEC 33653599 + 33653579 33653619 41 GTGAGAACCACAACCGGGACCTGCAGGTGAGTGCCTCGCCA GTGAGAACCACAACCGGGACCTGTAGGTGAGTGCCTCGCCA < 41bp 1 0.458025849009731 1 0.223902702331543 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33653599 chr6:33653602 stopgain 0.977 1 24 hm5C_associated_SNPs_41612 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643406634 1 0.999536713186732 hm5C_site_40762 DeepMRMD:1;iRNA_m5C:0.999536713186732 40763 chr4 166259867 166259867 1 + G A UCEC 166259885 + 166259865 166259905 41 CTGCATAGACTCTTACACCACAAAAGAATATACAAGTATAT CTACATAGACTCTTACACCACAAAAGAATATACAAGTATAT < 41bp 1 0.509924774029577 1 0.165877044200897 experiment 0.980150451940846 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166259885 chr4:166259867 synonymous SNV . 0 3 hm5C_associated_SNPs_41613 0 0 1 0 2 Ribosome 1 0.500232013533724 1 0.999535972932552 hm5C_site_40763 DeepMRMD:1;iRNA_m5C:0.999535972932552 40764 chr11 65402529 65402529 1 + G A UCEC 65402544 + 65402524 65402564 41 TTGCCGACATGGACCTGCTTCACCGCGTTGTGGCGCCTGGG TTGCCAACATGGACCTGCTTCACCGCGTTGTGGCGCCTGGG < 41bp 1 0.26173546802241 1 0.116613000631332 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402544 chr11:65402529 nonsynonymous SNV 0.988 4 6 hm5C_associated_SNPs_41614 0 0 1 0 2 Ribosome 1 0.500231643826557 1 0.999536712346886 hm5C_site_40764 DeepMRMD:1;iRNA_m5C:0.999536712346886 40765 chr2 135883791 135883791 1 + G T UCEC 135883796 + 135883776 135883816 41 CCTCATCTGACCGAAGGGATCATTGTGGATAATGATGTTTA CCTCATCTGACCGAATGGATCATTGTGGATAATGATGTTTA < 41bp 1 0.142176997658317 1 0.0930217206478119 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883796 chr2:135883791 nonsynonymous SNV 0.990 4 16 hm5C_associated_SNPs_41615 0 0 1 0 2 Cytosol 1 0.500231643921078 1 0.999536712157844 hm5C_site_40765 DeepMRMD:1;iRNA_m5C:0.999536712157844 40766 chr22 51044080 51044080 1 + C A UCEC 51044075 + 51044055 51044095 41 AGGAGGACGACTTCTGGTTCCGTGGCTTCAACATGCGCACG AGGAGGACGACTTCTGGTTCCGTGGATTCAACATGCGCACG < 41bp 1 0.414287304669216 1 0.810709178447723 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044075 chr22:51044080 synonymous SNV . 0 26 hm5C_associated_SNPs_41616 0 0 0 0 2 exosome 1 0.500234603090894 0.378581643104554 0.999530793818212 hm5C_site_40766 DeepMRMD:0.378581643104554;iRNA_m5C:0.999530793818212 40767 chr1 45808595 45808595 1 + G T UCEC 45808600 + 45808580 45808620 41 ATCCTTCCAGCATGAGGGACCATATTGATTACCGCTGCTGC ATCCTTCCAGCATGATGGACCATATTGATTACCGCTGCTGC < 41bp 1 0.106645491866392 1 0.0215809941291809 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TOE1 ENSG00000132773 CDS Human protein_coding chr1:45808600 chr1:45808595 nonsynonymous SNV 0.944 2 16 hm5C_associated_SNPs_41617 0 0 1 0 1 Ribosome 1 0.500229830820837 1 0.999540338358326 hm5C_site_40767 DeepMRMD:1;iRNA_m5C:0.999540338358326 40768 chr7 128852096 128852096 1 + A T UCEC 128852114 + 128852094 128852134 41 GGACTCTTGCCGACAGGGAGCGTGGACCCTGGTCTCCAACC GGTCTCTTGCCGACAGGGAGCGTGGACCCTGGTCTCCAACC < 41bp 1 0.485078153777505 1 0.470675110816956 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128852114 chr7:128852096 nonsynonymous SNV 0.556 1 3 hm5C_associated_SNPs_41618 0 0 0 0 0 cytosol 1 0.500231643913017 1 0.999536712173966 hm5C_site_40768 DeepMRMD:1;iRNA_m5C:0.999536712173966 40769 chr3 49742510 49742510 1 + C A UCEC 49742520 + 49742500 49742540 41 CAACCGCTTCCTCAGCACAGCGGCTGTGAGCCTCATGACCC CAACCGCTTCATCAGCACAGCGGCTGTGAGCCTCATGACCC < 41bp 1 0.441984577554233 1 0.260640323162079 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742520 chr3:49742510 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_41619 0 0 1 0 1 Nucleus 1 0.500231577967301 1 0.999536844065398 hm5C_site_40769 DeepMRMD:1;iRNA_m5C:0.999536844065398 40770 chr16 84684524 84684524 1 + C T UCEC 84684521 + 84684501 84684541 41 GTGTCTCGGCCATACAAGATCAGCGAATCATCAAAGGTCTG GTGTCTCGGCCATACAAGATCAGTGAATCATCAAAGGTCTG < 41bp 1 0.295753876597244 1 0.084331214427948 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84684521 chr16:84684524 synonymous SNV . 0 24 hm5C_associated_SNPs_41620 0 0 0 0 2 chromatin 1 0.500231616365883 1 0.999536767268233 hm5C_site_40770 DeepMRMD:1;iRNA_m5C:0.999536767268233 40771 chr20 52824657 52824657 1 + G T UCEC 52824647 + 52824627 52824667 41 GTCCAGTCCCAAGATGGCGGCCACCATGAAGAAGGCGGTGA GTCCAGTCCCAAGATGGCGGCCACCATGAATAAGGCGGTGA < 41bp 1 0.253523821293848 1 0.0418843626976013 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PFDN4 ENSG00000101132 CDS Human protein_coding chr20:52824647 chr20:52824657 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_41621 0 0 1 0 1 Ribosome 1 0.500231643921718 1 0.999536712156563 hm5C_site_40771 DeepMRMD:1;iRNA_m5C:0.999536712156563 40772 chr16 2284212 2284212 1 + C T UCEC 2284209 + 2284189 2284229 41 TGCGCGCAGTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCT TGCGCGCAGTGTGGCAAGGCCTTTCCCAAGGCCTACCTGCT < 41bp 1 0.0229689254079671 1 0.0454350709915161 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284209 chr16:2284212 synonymous SNV . 0 24 hm5C_associated_SNPs_41622 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40772 DeepMRMD:1;iRNA_m5C:0.999536712157815 40773 chr9 134354739 134354739 1 + G A UCEC 134354743 + 134354723 134354763 41 GACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTG GACGTGACCGTGCCTGACAGCAGCCTGGGCACTGAGATCTG < 41bp 1 0.31557199151978 1 0.220277726650238 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134354743 chr9:134354739 nonsynonymous SNV 0.504 2 17 hm5C_associated_SNPs_41623 0 0 1 0 0 Nucleus 1 0.500231643921095 1 0.99953671215781 hm5C_site_40773 DeepMRMD:1;iRNA_m5C:0.99953671215781 40774 chrX 18606144 18606144 1 + C T UCEC 18606141 + 18606121 18606161 41 TTGGGGAGCTTAGCGATGGACAGCCTTTATTTCCTGGAGAA TTGGGGAGCTTAGCGATGGACAGTCTTTATTTCCTGGAGAA < 41bp 1 0.232851849769126 1 0.245151281356812 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18606141 chrX:18606144 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_41624 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40774 DeepMRMD:1;iRNA_m5C:0.999536712157815 40775 chr1 65871727 65871727 1 + C T UCEC 65871740 + 65871720 65871760 41 CCCCACTCCTCTCCCCAGAACCGACCCAACTACAACGTGAG CCCCACTTCTCTCCCCAGAACCGACCCAACTACAACGTGAG < 41bp 1 0.0676419417762926 1 0.108251243829727 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871740 chr1:65871727 nonsynonymous SNV 0.138 1 8 hm5C_associated_SNPs_41625 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40775 DeepMRMD:1;iRNA_m5C:0.999536712157815 40776 chr1 109806291 109806291 1 + G A UCEC 109806280 + 109806260 109806300 41 GCAGCAGCCTGGTGGCCTGGCATGGCCTCTCGCTGCCCATC GCAGCAGCCTGGTGGCCTGGCATGGCCTCTCACTGCCCATC < 41bp 1 0.276992385336399 1 0.162453472614288 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806280 chr1:109806291 synonymous SNV . 0 32 hm5C_associated_SNPs_41626 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921228 1 0.999536712157545 hm5C_site_40776 DeepMRMD:1;iRNA_m5C:0.999536712157545 40777 chr3 9775917 9775917 1 + C T UCEC 9775905 + 9775885 9775925 41 TACGAGTGCCCGGTGGAGACCTGCCGAAAGGTCTACAAGAG TACGAGTGCCCGGTGGAGACCTGCCGAAAGGTTTACAAGAG < 41bp 1 0.409257117241261 1 0.484197020530701 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9775905 chr3:9775917 synonymous SNV . 0 33 hm5C_associated_SNPs_41628 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40777 DeepMRMD:1;iRNA_m5C:0.999536712157815 40778 chr4 107268735 107268735 1 + G T UCEC 107268727 + 107268707 107268747 41 CTAAGAAGAAGATTTGGGAGCAGATCCAGCCTGATCTTCAC CTAAGAAGAAGATTTGGGAGCAGATCCATCCTGATCTTCAC < 41bp 1 0.3967627880705 1 0.108632922172546 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107268727 chr4:107268735 nonsynonymous SNV 0.918 4 29 hm5C_associated_SNPs_41629 0 0 1 0 1 Ribosome 1 0.500231597874237 1 0.999536804251526 hm5C_site_40778 DeepMRMD:1;iRNA_m5C:0.999536804251526 40779 chr19 45493759 45493759 1 + C T UCEC 45493744 + 45493724 45493764 41 CAGTCATTCGTGGTCCTCCTCTACATCCTGGACAACGAGAC CAGTCATTCGTGGTCCTCCTCTACATCCTGGACAATGAGAC < 41bp 1 0.649040911585395 1 0.720036268234253 experiment 0.701918176829209 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493744 chr19:45493759 synonymous SNV . 0 36 hm5C_associated_SNPs_41630 0 0 1 0 1 Cytosol 1 0.500231643920625 0.559927463531494 0.999536712158749 hm5C_site_40779 DeepMRMD:0.559927463531494;iRNA_m5C:0.999536712158749 40780 chr19 45493759 45493759 1 + C T UCEC 45493756 + 45493736 45493776 41 GTCCTCCTCTACATCCTGGACAACGAGACCAACTTCGTGGT GTCCTCCTCTACATCCTGGACAATGAGACCAACTTCGTGGT < 41bp 1 0.253695918392514 1 0.0227035582065582 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493756 chr19:45493759 synonymous SNV . 0 24 hm5C_associated_SNPs_41631 0 0 1 0 1 Cytosol 1 0.500231643921086 1 0.999536712157828 hm5C_site_40780 DeepMRMD:1;iRNA_m5C:0.999536712157828 40781 chr19 45493759 45493759 1 + C T UCEC 45493765 + 45493745 45493785 41 TACATCCTGGACAACGAGACCAACTTCGTGGTCCAGGTCAG TACATCCTGGACAATGAGACCAACTTCGTGGTCCAGGTCAG < 41bp 1 0.348777132552503 1 0.0284381806850433 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45493765 chr19:45493759 synonymous SNV . 0 15 hm5C_associated_SNPs_41632 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_40781 DeepMRMD:1;iRNA_m5C:0.999536712157814 40782 chr5 158695984 158695984 1 + G A UCEC 158695994 + 158695974 158696014 41 CACACTTTCAGAAGATGATACTGTGCTCGATCTCAAACAGT CACACTTTCAAAAGATGATACTGTGCTCGATCTCAAACAGT < 41bp 1 0.301608523077707 1 0.0556452572345734 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158695994 chr5:158695984 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_41634 0 0 1 0 1 Cytosol 1 0.500236027151079 1 0.999527945697843 hm5C_site_40782 DeepMRMD:1;iRNA_m5C:0.999527945697843 40783 chr10 35854954 35854954 1 + C T UCEC 35854964 + 35854944 35854984 41 TTTGCAGGAACGAGCTAGAGCGACAGTTTCTTGAATTGCTG TTTGCAGGAATGAGCTAGAGCGACAGTTTCTTGAATTGCTG < 41bp 1 0.627575311857442 1 0.300900012254715 experiment 0.744849376285115 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNY ENSG00000108100 CDS Human protein_coding chr10:35854964 chr10:35854954 synonymous SNV . 0 11 hm5C_associated_SNPs_41635 0 0 1 0 1 Cytosol 1 0.500234769900521 1 0.999530460198958 hm5C_site_40783 DeepMRMD:1;iRNA_m5C:0.999530460198958 40784 chr8 42226801 42226801 1 + C T UCEC 42226797 + 42226777 42226817 41 TGTTCATTTTAGGGTGTTTGCCAGCTTCCCAGTAAAAATGA TGTTCATTTTAGGGTGTTTGCCAGTTTCCCAGTAAAAATGA < 41bp 1 0.37781735440952 1 0.252597749233246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLB ENSG00000070501 CDS Human protein_coding chr8:42226797 chr8:42226801 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_41637 0 0 1 0 1 Cytosol 1 0.500231643771173 1 0.999536712457654 hm5C_site_40784 DeepMRMD:1;iRNA_m5C:0.999536712457654 40785 chr1 155032755 155032755 1 + T C UCEC 155032751 + 155032731 155032771 41 GTCCTGGTGATGCTTGGTGCCAGCTACTGGTACCGTGCCCG GTCCTGGTGATGCTTGGTGCCAGCCACTGGTACCGTGCCCG < 41bp 1 0.478897095913898 1 0.440146803855896 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155032751 chr1:155032755 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_41638 0 0 1 0 2 Ribosome 1 0.500231641182037 1 0.999536717635926 hm5C_site_40785 DeepMRMD:1;iRNA_m5C:0.999536717635926 40786 chr12 72094663 72094663 1 + G T UCEC 72094681 + 72094661 72094701 41 AAGGCACATAGCAGGGAAACCCATTCTTGATAACAACGCAG AATGCACATAGCAGGGAAACCCATTCTTGATAACAACGCAG < 41bp 1 0.10789714758814 1 0.118577867746353 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM19 ENSG00000139291 CDS Human protein_coding chr12:72094681 chr12:72094663 nonsynonymous SNV 0.573 1 3 hm5C_associated_SNPs_41639 0 0 0 1 0 Endoplasmic reticulum 1 0.499951059722747 1 1 hm5C_site_40786 DeepMRMD:1;iRNA_m5C:1 40787 chr6 35392250 35392250 1 + C T UCEC 35392256 + 35392236 35392276 41 CAGTGGAGACCGTGCGGGAGCTCACTGAGTTCGCCAAGAGC CAGTGGAGACCGTGTGGGAGCTCACTGAGTTCGCCAAGAGC < 41bp 1 0.223860957145234 1 0.160628527402878 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPARD ENSG00000112033 CDS Human protein_coding chr6:35392256 chr6:35392250 nonsynonymous SNV 0.844 4 15 hm5C_associated_SNPs_41640 0 0 1 0 0 Cytosol 1 0.500231643920666 1 0.999536712158668 hm5C_site_40787 DeepMRMD:1;iRNA_m5C:0.999536712158668 40788 chr6 35392250 35392250 1 + C T UCEC 35392258 + 35392238 35392278 41 GTGGAGACCGTGCGGGAGCTCACTGAGTTCGCCAAGAGCAT GTGGAGACCGTGTGGGAGCTCACTGAGTTCGCCAAGAGCAT < 41bp 1 0.478256050077637 1 0.164636224508286 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPARD ENSG00000112033 CDS Human protein_coding chr6:35392258 chr6:35392250 nonsynonymous SNV 0.844 4 13 hm5C_associated_SNPs_41641 0 0 1 0 0 Cytosol 1 0.500229035064807 1 0.999541929870386 hm5C_site_40788 DeepMRMD:1;iRNA_m5C:0.999541929870386 40789 chr11 85977211 85977211 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATTAA < 41bp 1 0.161884874173062 1 0.116541057825089 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977211 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_41642 0 0 1 13 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40789 DeepMRMD:1;iRNA_m5C:0.999536712157815 40790 chr18 56063409 56063409 1 + C A UCEC 56063414 + 56063394 56063434 41 TGCAGCTTTAATCGCCTTGACTTACCTCCATATGAAACCTT TGCAGCTTTAATCGCATTGACTTACCTCCATATGAAACCTT < 41bp 1 0.042279831757312 1 0.0859885811805725 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:56063414 chr18:56063409 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_41643 0 0 1 0 1 Cytosol 1 0.500231643922021 1 0.999536712155957 hm5C_site_40790 DeepMRMD:1;iRNA_m5C:0.999536712155957 40791 chrX 129173212 129173212 1 + G T UCEC 129173210 + 129173190 129173230 41 GGCTACCTACTCGGGTCAGACAGCCATGAAGCTGGCCAGCA GGCTACCTACTCGGGTCAGACATCCATGAAGCTGGCCAGCA < 41bp 1 0.136105932064313 1 0.288677036762238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129173210 chrX:129173212 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_41644 0 0 0 0 1 Cytosol 1 0.500231643921248 1 0.999536712157504 hm5C_site_40791 DeepMRMD:1;iRNA_m5C:0.999536712157504 40792 chr4 148555323 148555323 1 + G A UCEC 148555322 + 148555302 148555342 41 GAAAACTTTATATTAAAGGACGGACAGTCAGGGGACATCCC GAAAACTTTATATTAAAGGACAGACAGTCAGGGGACATCCC < 41bp 1 0.117829364234517 1 0.0838279128074646 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM184C ENSG00000164168 CDS Human protein_coding chr4:148555322 chr4:148555323 nonsynonymous SNV 0.052 2 22 hm5C_associated_SNPs_41645 0 0 1 0 1 Nucleus 1 0.500231643921126 1 0.999536712157749 hm5C_site_40792 DeepMRMD:1;iRNA_m5C:0.999536712157749 40793 chr11 111863187 111863187 1 + C T UCEC 111863173 + 111863153 111863193 41 GAGATTGACTCAGCAGGACACATCTGTTCTTCAGCTCAAAC GAGATTGACTCAGCAGGACACATCTGTTCTTCAGTTCAAAC < 41bp 1 0.134117735110617 1 0.0365367829799652 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111863173 chr11:111863187 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_41649 0 0 1 0 2 Ribosome 1 0.50023158497245 1 0.999536830055099 hm5C_site_40793 DeepMRMD:1;iRNA_m5C:0.999536830055099 40794 chr2 74086421 74086421 1 + T C UCEC 74086431 + 74086411 74086451 41 AGTGTCGACCTACACACTCACTGCTCTTACCAGATGATGTT AGTGTCGACCCACACACTCACTGCTCTTACCAGATGATGTT < 41bp 1 0.463580022045016 1 0.0701512694358826 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74086431 chr2:74086421 nonsynonymous SNV 0.747 3 11 hm5C_associated_SNPs_41650 0 0 1 0 2 Ribosome 1 0.50023164399377 1 0.99953671201246 hm5C_site_40794 DeepMRMD:1;iRNA_m5C:0.99953671201246 40795 chr16 67575951 67575951 1 + C T UCEC 67575945 + 67575925 67575965 41 CCAAGTTGCCTTCCGCAGGCCTGAGACCCCCAGCTCTGGGC CCAAGTTGCCTTCCGCAGGCCTGAGATCCCCAGCTCTGGGC < 41bp 1 0.562462455478097 1 0.067734956741333 experiment 0.875075089043805 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575945 chr16:67575951 nonsynonymous SNV 0.029 1 27 hm5C_associated_SNPs_41651 0 0 1 0 0 unknown 1 0.500231643735613 1 0.999536712528774 hm5C_site_40795 DeepMRMD:1;iRNA_m5C:0.999536712528774 40796 chr1 39851485 39851485 1 + C A UCEC 39851491 + 39851471 39851511 41 CGAGGTTAAGGAGGCTCAGACACTGTGCGATGAACTCTCAG CGAGGTTAAGGAGGATCAGACACTGTGCGATGAACTCTCAG < 41bp 1 0.167973086898995 1 0.136606693267822 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39851491 chr1:39851485 nonsynonymous SNV 0.991 4 15 hm5C_associated_SNPs_41652 0 0 1 0 0 Endoplasmic reticulum 1 0.500231665514155 1 0.999536668971689 hm5C_site_40796 DeepMRMD:1;iRNA_m5C:0.999536668971689 40797 chr12 122623378 122623378 1 + C A UCEC 122623396 + 122623376 122623416 41 TGCTCCCTGCCACGGGAGTCCCCGTTACCCGGCGCCAGTTT TGATCCCTGCCACGGGAGTCCCCGTTACCCGGCGCCAGTTT < 41bp 1 0.187289956524819 1 0.0627383291721344 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MLXIP ENSG00000175727 CDS Human protein_coding chr12:122623396 chr12:122623378 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_41653 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40797 DeepMRMD:1;iRNA_m5C:0.999536712157815 40798 chr12 122255115 122255115 1 + C T UCEC 122255128 + 122255108 122255148 41 TCAAGGTCAAGAGGAAGGAGCCACCAGACACCACCTCATCT TCAAGGTTAAGAGGAAGGAGCCACCAGACACCACCTCATCT < 41bp 1 0.0305042637692219 1 0.0925533175468445 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122255128 chr12:122255115 synonymous SNV . 0 8 hm5C_associated_SNPs_41654 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40798 DeepMRMD:1;iRNA_m5C:0.999536712157815 40799 chr3 39110340 39110340 1 + C T UCEC 39110322 + 39110302 39110342 41 GGCCATGAATCAACTGGGAACAATCATTGTATCAGGGTCCA GGCCATGAATCAACTGGGAACAATCATTGTATCAGGGTTCA < 41bp 1 0.0825478587892778 1 0.365059673786163 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110322 chr3:39110340 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_41656 0 0 0 1 2 Ribosome 1 0.500231684205267 1 0.999536631589465 hm5C_site_40799 DeepMRMD:1;iRNA_m5C:0.999536631589465 40800 chr3 39110340 39110340 1 + C T UCEC 39110326 + 39110306 39110346 41 ATGAATCAACTGGGAACAATCATTGTATCAGGGTCCACTGA ATGAATCAACTGGGAACAATCATTGTATCAGGGTTCACTGA < 41bp 1 0.291352105998913 1 0.250509262084961 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR48 ENSG00000114742 CDS Human protein_coding chr3:39110326 chr3:39110340 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_41657 0 0 0 1 2 Ribosome 1 0.500231643946568 1 0.999536712106864 hm5C_site_40800 DeepMRMD:1;iRNA_m5C:0.999536712106864 40801 chr9 95599756 95599756 1 + T C UCEC 95599736 + 95599716 95599756 41 CGCTGTGGTCTCCGCTGGGGCCGCTGGAGGCCCCGGGGCCT CGCTGTGGTCTCCGCTGGGGCCGCTGGAGGCCCCGGGGCCC < 41bp 1 0.506043260664453 1 0.328397393226624 experiment 0.987913478671094 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599736 chr9:95599756 . . 0 41 hm5C_associated_SNPs_41658 0 0 0 0 0 unknown 1 0.500231643047251 1 0.999536713905498 hm5C_site_40801 DeepMRMD:1;iRNA_m5C:0.999536713905498 40802 chr9 95599756 95599756 1 + T C UCEC 95599746 + 95599726 95599766 41 TCCGCTGGGGCCGCTGGAGGCCCCGGGGCCTGAGTTTCCGG TCCGCTGGGGCCGCTGGAGGCCCCGGGGCCCGAGTTTCCGG < 41bp 1 0.673400643796094 1 0.694379329681396 experiment 0.653198712407811 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599746 chr9:95599756 . . 0 31 hm5C_associated_SNPs_41660 0 0 0 0 0 unknown 1 0.500231643921092 0.611241340637208 0.999536712157816 hm5C_site_40802 DeepMRMD:0.611241340637208;iRNA_m5C:0.999536712157816 40803 chr1 180064827 180064827 1 + C T UCEC 180064828 + 180064808 180064848 41 AAAAATAAGGCAGAAGAAACCATTGTACCTCTAATGGCAGA AAAAATAAGGCAGAAGAAATCATTGTACCTCTAATGGCAGA < 41bp 1 0.115557247994516 1 0.328599214553833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP350 ENSG00000135837 CDS Human protein_coding chr1:180064828 chr1:180064827 nonsynonymous SNV 0.986 0 20 hm5C_associated_SNPs_41662 0 0 1 0 0 Nucleus 1 0.500231643313744 1 0.999536713372512 hm5C_site_40803 DeepMRMD:1;iRNA_m5C:0.999536713372512 40804 chr21 47986587 47986587 1 + T G UCEC 47986588 + 47986568 47986608 41 ATCCGAGCACACAGGAGCATCGCTGAGTGGTAAGAGCCCAG ATCCGAGCACACAGGAGCAGCGCTGAGTGGTAAGAGCCCAG < 41bp 1 0.281425882126049 1 0.227800011634827 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986588 chr21:47986587 nonsynonymous SNV 0.981 2 20 hm5C_associated_SNPs_41663 0 0 1 0 1 Cytosol 1 0.500232408978987 1 0.999535182042026 hm5C_site_40804 DeepMRMD:1;iRNA_m5C:0.999535182042026 40805 chr2 113260562 113260562 1 + C A UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAAACATATCATGTTGATA < 41bp 1 0.529682514064647 1 0.500202476978302 experiment 0.940634971870706 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260562 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_41664 0 0 1 5 1 Cytosol 1 0.500230252572648 0.999595046043396 0.999539494854705 hm5C_site_40805 DeepMRMD:0.999595046043396;iRNA_m5C:0.999539494854705 40806 chr19 16296485 16296485 1 + G T UCEC 16296488 + 16296468 16296508 41 ACTCCTGGAAGCAATGGGAACGAGCAAAAAGAACGAGGAGG ACTCCTGGAAGCAATGGTAACGAGCAAAAAGAACGAGGAGG < 41bp 1 0.647647334463699 1 0.606327295303345 experiment 0.704705331072602 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FAM32A ENSG00000105058 CDS Human protein_coding chr19:16296488 chr19:16296485 nonsynonymous SNV 0.984 0 18 hm5C_associated_SNPs_41665 0 0 1 0 2 Ribosome 1 0.500231643921059 0.78734540939331 0.999536712157882 hm5C_site_40806 DeepMRMD:0.78734540939331;iRNA_m5C:0.999536712157882 40807 chr3 100059959 100059959 1 + G A UCEC 100059974 + 100059954 100059994 41 CACCTGTGCTGTGTTTGGGCCTGATGGAACTTTACTAGCAA CACCTATGCTGTGTTTGGGCCTGATGGAACTTTACTAGCAA < 41bp 1 0.395606388268192 1 0.108839780092239 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NIT2 ENSG00000114021 CDS Human protein_coding chr3:100059974 chr3:100059959 nonsynonymous SNV 0.971 4 6 hm5C_associated_SNPs_41666 0 0 1 0 2 Ribosome 1 0.500231643202578 1 0.999536713594845 hm5C_site_40807 DeepMRMD:1;iRNA_m5C:0.999536713594845 40808 chr3 4856217 4856217 1 + G T UCEC 4856235 + 4856215 4856255 41 TAGGAGATGTACTCAGGAAGCCGTCCAAAGAGGTAAATTAA TATGAGATGTACTCAGGAAGCCGTCCAAAGAGGTAAATTAA < 41bp 1 0.0455194813962601 1 0.448493987321854 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4856235 chr3:4856217 stopgain 0.998 1 3 hm5C_associated_SNPs_41667 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921189 1 0.999536712157622 hm5C_site_40808 DeepMRMD:1;iRNA_m5C:0.999536712157622 40809 chr15 43632483 43632483 1 + A C UCEC 43632491 + 43632471 43632511 41 AGATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC AGATGTCATAAACGAATTTGCAGATGACGGCGTCAAGTACC < 41bp 1 0.503472669373406 1 0.483913153409958 experiment 0.993054661253188 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADAL ENSG00000168803 CDS Human protein_coding chr15:43632491 chr15:43632483 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_41668 0 0 1 0 1 chromatin 1 0.500231772989488 1 0.999536454021025 hm5C_site_40809 DeepMRMD:1;iRNA_m5C:0.999536454021025 40810 chr22 38201758 38201758 1 + G A UCEC 38201755 + 38201735 38201775 41 GAGAACGCTGACTCGCAGATCAAGTTGTCCATCAAGCGCCT GAGAACGCTGACTCGCAGATCAAATTGTCCATCAAGCGCCT < 41bp 1 0.276338347365862 1 0.200383365154266 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control H1F0 ENSG00000189060 CDS Human protein_coding chr22:38201755 chr22:38201758 synonymous SNV . 0 24 hm5C_associated_SNPs_41669 0 0 1 0 0 Ribosome 1 0.499994237291312 1 1 hm5C_site_40810 DeepMRMD:1;iRNA_m5C:1 40811 chr3 49052386 49052386 1 + G A UCEC 49052377 + 49052357 49052397 41 GCAGTGAAGATGGATCCCTCCATGTCTTCGTGCTTGCTGTG GCAGTGAAGATGGATCCCTCCATGTCTTCATGCTTGCTGTG < 41bp 1 0.216262132696634 1 0.0619321763515472 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR6 ENSG00000178252 CDS Human protein_coding chr3:49052377 chr3:49052386 nonsynonymous SNV 0.037 0 30 hm5C_associated_SNPs_41671 0 0 1 0 0 Nucleus 1 0.50023164399191 1 0.999536712016179 hm5C_site_40811 DeepMRMD:1;iRNA_m5C:0.999536712016179 40812 chr11 46400051 46400051 1 + G A UCEC 46400038 + 46400018 46400058 41 ATTGAGGCTGCCAAGAGGAACGACTTCTGTAAGGTACTAGC ATTGAGGCTGCCAAGAGGAACGACTTCTGTAAGATACTAGC < 41bp 1 0.156403238297425 1 0.445477545261383 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 splicing Human protein_coding chr11:46400038 chr11:46400051 . 0.971 0 34 hm5C_associated_SNPs_41673 0 0 1 0 1 Ribosome 1 0.500231643922276 1 0.999536712155448 hm5C_site_40812 DeepMRMD:1;iRNA_m5C:0.999536712155448 40813 chr16 29828323 29828323 1 + G A UCEC 29828307 + 29828287 29828327 41 ATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAGGAAA ATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAAGAAA < 41bp 1 0.376808886776886 1 0.726247608661652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828307 chr16:29828323 synonymous SNV . 0 37 hm5C_associated_SNPs_41674 0 0 1 0 1 Ribosome 1 0.500231643788269 0.547504782676696 0.999536712423462 hm5C_site_40813 DeepMRMD:0.547504782676696;iRNA_m5C:0.999536712423462 40814 chr17 4498569 4498569 1 + G A UCEC 4498575 + 4498555 4498595 41 CGCACCTCGGAGGCGCAGGCCCGGAAAGCATTGTTTGAGAA CGCACCTCGGAGGCACAGGCCCGGAAAGCATTGTTTGAGAA < 41bp 1 0.664245155101031 1 0.338069975376129 experiment 0.671509689797939 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4498575 chr17:4498569 synonymous SNV . 0 15 hm5C_associated_SNPs_41675 0 0 0 0 1 insoluble cytoplasm 1 0.500231643498071 1 0.999536713003857 hm5C_site_40814 DeepMRMD:1;iRNA_m5C:0.999536713003857 40815 chr1 32680484 32680484 1 + G T UCEC 32680487 - 32680467 32680507 41 TTGCTTCTTGGCTGAATGGTCTGCTGGGGTCTGGCATAGAA TTGCTTCTTGGCTGAATGGTCTGATGGGGTCTGGCATAGAA < 41bp 1 0.448332243789976 1 0.233003228902817 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32680487 chr1:32680484 nonsynonymous SNV 0.891 0 24 hm5C_associated_SNPs_41676 0 0 1 0 0 cytosol 1 0.500231643921141 1 0.999536712157718 hm5C_site_40815 DeepMRMD:1;iRNA_m5C:0.999536712157718 40816 chr12 56504367 56504367 1 + A G UCEC 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGAGAACCGCTATTTACAAACGAGACCCCTCTAAACA < 41bp 1 0.390486987976527 1 0.436355412006378 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504367 nonsynonymous SNV 0.998 1 13 hm5C_associated_SNPs_41677 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40816 DeepMRMD:1;iRNA_m5C:0.999536712157815 40817 chr16 731820 731820 1 + C T UCEC 731817 + 731797 731837 41 CTGGAAGAGTGCCAGCGAAACCACGAGGGTGATGAGGACGA CTGGAAGAGTGCCAGCGAAACCATGAGGGTGATGAGGACGA < 41bp 1 0.202559604461186 1 0.108296066522598 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STUB1 ENSG00000103266 CDS Human protein_coding chr16:731817 chr16:731820 synonymous SNV . 0 24 hm5C_associated_SNPs_41678 0 0 1 0 2 Endoplasmic reticulum 1 0.500230033284834 1 0.999539933430332 hm5C_site_40817 DeepMRMD:1;iRNA_m5C:0.999539933430332 40818 chr2 201485950 201485950 1 + A G UCEC 201485944 + 201485924 201485964 41 CTTCTGCTTTTTTACTGAAGCTGAGAAATTTCTGGCGACAG CTTCTGCTTTTTTACTGAAGCTGAGAGATTTCTGGCGACAG < 41bp 1 0.446847821657392 1 0.114918619394302 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AOX1 ENSG00000138356 CDS Human protein_coding chr2:201485944 chr2:201485950 nonsynonymous SNV 0.002 0 27 hm5C_associated_SNPs_41679 0 0 0 0 1 Endoplasmic reticulum 1 0.500231849233852 1 0.999536301532297 hm5C_site_40818 DeepMRMD:1;iRNA_m5C:0.999536301532297 40819 chr5 92923708 92923708 1 + C T UCEC 92923717 + 92923697 92923737 41 AACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCT AACGGCCACTGTTACCTGTCCGGCTACATCTCGCTGCTGCT < 41bp 1 0.293953329888808 1 0.312545627355576 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92923717 chr5:92923708 synonymous SNV . 0 12 hm5C_associated_SNPs_41680 0 0 1 0 1 nucleus 1 0.500231643921105 1 0.99953671215779 hm5C_site_40819 DeepMRMD:1;iRNA_m5C:0.99953671215779 40820 chr20 279029 279029 1 + G T UCEC 279018 + 278998 279038 41 CATCCTCTTCCGGAACGAGACGGTGGACGTGGAGGACATTG CATCCTCTTCCGGAACGAGACGGTGGACGTGTAGGACATTG < 41bp 1 0.595190065661058 1 0.475616842508316 experiment 0.809619868677883 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZCCHC3 ENSG00000177764 CDS Human other chr20:279018 chr20:279029 stopgain 1.000 0 32 hm5C_associated_SNPs_41681 0 0 1 1 0 Cytosol 1 0.500229003731133 1 0.999541992537734 hm5C_site_40820 DeepMRMD:1;iRNA_m5C:0.999541992537734 40821 chr3 122419860 122419860 1 + T C UCEC 122419849 + 122419829 122419869 41 GACTTGGCACGGCTTCCTGTCGATGTGGTGGTGAATGCATC GACTTGGCACGGCTTCCTGTCGATGTGGTGGCGAATGCATC < 41bp 1 0.31407172215286 1 0.502550065517426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PARP14 ENSG00000173193 CDS Human protein_coding chr3:122419849 chr3:122419860 nonsynonymous SNV 0.082 4 32 hm5C_associated_SNPs_41682 0 0 1 0 0 Nucleus 1 0.500231643921092 0.994899868965148 0.999536712157815 hm5C_site_40821 DeepMRMD:0.994899868965148;iRNA_m5C:0.999536712157815 40822 chr7 148979318 148979318 1 + C A UCEC 148979322 + 148979302 148979342 41 CAACCGCAACCACCACCTGGCCGTGCACATGCAGACCCACG CAACCGCAACCACCACATGGCCGTGCACATGCAGACCCACG < 41bp 1 0.0700326003502959 1 0.0361860990524292 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148979322 chr7:148979318 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_41683 0 0 1 0 0 chromatin 1 0.517709864269849 1 0.964580271460302 hm5C_site_40822 DeepMRMD:1;iRNA_m5C:0.964580271460302 40823 chr6 145103207 145103207 1 + G A UCEC 145103189 + 145103169 145103209 41 ATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAACGTT ATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAACATT < 41bp 1 0.148918291464243 1 0.139955252408981 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145103189 chr6:145103207 nonsynonymous SNV 0.963 1 39 hm5C_associated_SNPs_41684 0 0 0 0 1 Nucleus 1 0.500231643921091 1 0.999536712157817 hm5C_site_40823 DeepMRMD:1;iRNA_m5C:0.999536712157817 40824 chr11 86947693 86947693 1 + G T UCEC 86947706 + 86947686 86947726 41 TTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG TTGTTTTTCATCACAGCTGCCATGTACATGTTCTTTTTCAG < 41bp 1 0.0453505374486022 1 0.042749434709549 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM135 ENSG00000166575 CDS Human protein_coding chr11:86947706 chr11:86947693 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_41685 0 0 1 0 2 Ribosome 1 0.500233062253581 1 0.999533875492839 hm5C_site_40824 DeepMRMD:1;iRNA_m5C:0.999533875492839 40825 chr20 42089377 42089377 1 + C G UCEC 42089358 + 42089338 42089378 41 TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCG TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTGG < 41bp 1 0.46614030768295 1 0.419936299324036 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089358 chr20:42089377 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_41686 0 0 1 0 1 Nucleus 1 0.50023164392145 1 0.999536712157099 hm5C_site_40825 DeepMRMD:1;iRNA_m5C:0.999536712157099 40826 chr3 99509738 99509738 1 + G A UCEC 99509758 + 99509738 99509778 41 GCAAGGAGATGCCCCACTTGCAGTATGGCAAAGAGTATCCA ACAAGGAGATGCCCCACTTGCAGTATGGCAAAGAGTATCCA < 41bp 1 0.637270327946395 1 0.338165432214737 experiment 0.725459344107209 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99509758 chr3:99509738 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_41687 0 0 0 0 0 Cytosol 1 0.500231643860636 1 0.999536712278728 hm5C_site_40826 DeepMRMD:1;iRNA_m5C:0.999536712278728 40827 chr5 132400704 132400704 1 + C T UCEC 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCGTTTAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC < 41bp 1 0.481455697847025 1 0.489507347345352 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400704 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_41688 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40827 DeepMRMD:1;iRNA_m5C:0.999536712157815 40828 chrX 47101580 47101580 1 + G A UCEC 47101578 + 47101558 47101598 41 CAAGTCCACGCTGGTGTGCCCCGATTGTGGCAATGTATCTG CAAGTCCACGCTGGTGTGCCCCAATTGTGGCAATGTATCTG < 41bp 1 0.0825929258083727 1 0.0674139559268951 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP11 ENSG00000102226 CDS Human protein_coding chrX:47101578 chrX:47101580 nonsynonymous SNV 0.979 3 23 hm5C_associated_SNPs_41689 0 0 1 0 1 cytosol 1 0.500231643860425 1 0.99953671227915 hm5C_site_40828 DeepMRMD:1;iRNA_m5C:0.99953671227915 40829 chr19 13002703 13002703 1 + A G UCEC 13002695 + 13002675 13002715 41 CGCTGGTGCTGGAGGAGCAGCTGACCACAGATGAGATCCTC CGCTGGTGCTGGAGGAGCAGCTGACCACGGATGAGATCCTC < 41bp 1 0.474535254408762 1 0.741491496562958 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13002695 chr19:13002703 synonymous SNV . 0 29 hm5C_associated_SNPs_41690 0 0 0 0 2 Ribosome 1 0.50023193385716 0.517017006874084 0.99953613228568 hm5C_site_40829 DeepMRMD:0.517017006874084;iRNA_m5C:0.99953613228568 40830 chr10 99416045 99416045 1 + G T UCEC 99416064 + 99416044 99416084 41 AGTATACCTGGCCAGTGAGACCTTCAACTATAGTGCCATTG ATTATACCTGGCCAGTGAGACCTTCAACTATAGTGCCATTG < 41bp 1 0.0134396712914965 1 0.0482575595378876 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PI4K2A ENSG00000155252;ENSG00000249967 CDS Human other chr10:99416064 chr10:99416045 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_41691 0 0 0 0 1 Ribosome 1 0.500231643859176 1 0.999536712281648 hm5C_site_40830 DeepMRMD:1;iRNA_m5C:0.999536712281648 40831 chr21 37617627 37617627 1 + T C UCEC 37617607 + 37617587 37617627 41 CCCGGACAGCAGCGAGCACACCGAGTCTGCAGATACAAGCT CCCGGACAGCAGCGAGCACACCGAGTCTGCAGATACAAGCC < 41bp 1 0.534927963196749 1 0.316916465759277 experiment 0.930144073606503 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOPEY2 ENSG00000142197 CDS Human protein_coding chr21:37617607 chr21:37617627 nonsynonymous SNV 0.319 2 41 hm5C_associated_SNPs_41692 0 0 0 0 0 cytosol 1 0.500231638476172 1 0.999536723047656 hm5C_site_40831 DeepMRMD:1;iRNA_m5C:0.999536723047656 40832 chr1 10435346 10435346 1 + C T UCEC 10435355 + 10435335 10435375 41 GCACAAAGCACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC GCACAAAGCACTGTGGGGTCCTTTTGCAGGCCCTCAATGAC < 41bp 1 0.0386004963593578 1 0.062830924987793 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10435355 chr1:10435346 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_41693 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40832 DeepMRMD:1;iRNA_m5C:0.999536712157815 40833 chr20 25198139 25198139 1 + G A UCEC 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGACACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC < 41bp 1 0.116671054457096 1 0.0753320753574371 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198139 nonsynonymous SNV 0.162 0 5 hm5C_associated_SNPs_41694 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643975344 1 0.999536712049313 hm5C_site_40833 DeepMRMD:1;iRNA_m5C:0.999536712049313 40834 chr5 110439989 110439989 1 + G A UCEC 110439992 + 110439972 110440012 41 ACTCTACAGCAATTGCCGGACTGACATTTCTCCATAGAGAG ACTCTACAGCAATTGCCAGACTGACATTTCTCCATAGAGAG < 41bp 1 0.390994566018732 1 0.253472864627838 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient WDR36 ENSG00000134987 CDS Human protein_coding chr5:110439992 chr5:110439989 nonsynonymous SNV 0.994 3 18 hm5C_associated_SNPs_41695 0 0 1 0 0 Nucleus 1 0.500231643891214 1 0.999536712217572 hm5C_site_40834 DeepMRMD:1;iRNA_m5C:0.999536712217572 40835 chr2 71780277 71780277 1 + C T UCEC 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTCGACATGACCTGCCTGCTGCTGGCCTCCA < 41bp 1 0.132576357723357 1 0.0163420140743256 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780277 nonsynonymous SNV 0.994 5 30 hm5C_associated_SNPs_41696 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_40835 DeepMRMD:1;iRNA_m5C:0.999536712157815 40836 chr19 49993826 49993826 1 + C T UCEC 49993825 + 49993805 49993845 41 CAGCCGCATCTTCTGGCGGACCGTGCGAGGTGAGCAGAGCG CAGCCGCATCTTCTGGCGGACTGTGCGAGGTGAGCAGAGCG < 41bp 1 0.347156113302824 1 0.232163906097412 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993825 chr19:49993826 synonymous SNV . 0 22 hm5C_associated_SNPs_41697 0 0 1 0 2 Cytosol 1 0.50023164353992 1 0.99953671292016 hm5C_site_40836 DeepMRMD:1;iRNA_m5C:0.99953671292016 40837 chr6 44221300 44221300 1 + G A UCEC 44221288 + 44221268 44221308 41 CAGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGAT CAGTTCCTGATGAGATCCCCCCTCTCGAGGGCAATGAGGAT < 41bp 1 0.0431993846448436 1 0.0520859360694885 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221288 chr6:44221300 nonsynonymous SNV 0.612 0 33 hm5C_associated_SNPs_41698 0 0 1 0 1 Nucleus 1 0.50023164349583 1 0.99953671300834 hm5C_site_40837 DeepMRMD:1;iRNA_m5C:0.99953671300834 40838 chr6 44221300 44221300 1 + G A UCEC 44221289 + 44221269 44221309 41 AGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATG AGTTCCTGATGAGATCCCCCCTCTCGAGGGCAATGAGGATG < 41bp 1 0.262744691981284 1 0.237962126731873 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221289 chr6:44221300 nonsynonymous SNV 0.612 0 32 hm5C_associated_SNPs_41699 0 0 1 0 1 Nucleus 1 0.500231643920811 1 0.999536712158379 hm5C_site_40838 DeepMRMD:1;iRNA_m5C:0.999536712158379 40839 chr11 47602091 47602091 1 + C T UCEC 47602077 + 47602057 47602097 41 AATATGCCTTTTCCTTCCAGCCACTGTCAGACCACGGAATG AATATGCCTTTTCCTTCCAGCCACTGTCAGACCATGGAATG < 41bp 1 0.186558951834566 1 0.0551910996437073 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47602077 chr11:47602091 nonsynonymous SNV 0.969 0 35 hm5C_associated_SNPs_41700 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40839 DeepMRMD:1;iRNA_m5C:0.999536712157815 40840 chr15 22945054 22945054 1 + G A UCEC 22945057 + 22945037 22945077 41 CAGGTGGTCACGGGCTCGGGCCGCCAGGAGGCCCAGAAGAC CAGGTGGTCACGGGCTCAGGCCGCCAGGAGGCCCAGAAGAC < 41bp 1 0.225578501924787 1 0.403597444295883 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22945057 chr15:22945054 synonymous SNV . 0 18 hm5C_associated_SNPs_41701 0 0 1 0 1 Cytosol 1 0.500231648508413 1 0.999536702983173 hm5C_site_40840 DeepMRMD:1;iRNA_m5C:0.999536702983173 40841 chr21 45733850 45733850 1 + C A UCEC 45733862 + 45733842 45733882 41 TTCATCCCCGAGGCTCCACCCGAGGACGGCTGGGAGAACTT TTCATCCCAGAGGCTCCACCCGAGGACGGCTGGGAGAACTT < 41bp 1 0.671565438405789 1 0.845573544502258 experiment 0.656869123188422 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45733862 chr21:45733850 synonymous SNV . 0 9 hm5C_associated_SNPs_41702 0 0 1 0 2 Ribosome 1 0.500231643918321 0.308852910995484 0.999536712163357 hm5C_site_40841 DeepMRMD:0.308852910995484;iRNA_m5C:0.999536712163357 40842 chrX 153663648 153663648 1 + G C UCEC 153663636 + 153663616 153663656 41 CCAGGTTCATTCTGGCCAACCGCCTCTACCCAGTGTCTGCC CCAGGTTCATTCTGGCCAACCGCCTCTACCCACTGTCTGCC < 41bp 1 0.398828778907708 1 0.0971961617469788 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153663636 chrX:153663648 nonsynonymous SNV 0.999 1 33 hm5C_associated_SNPs_41703 0 0 1 0 1 Ribosome 1 0.500231973169433 1 0.999536053661134 hm5C_site_40842 DeepMRMD:1;iRNA_m5C:0.999536053661134 40843 chr5 140741111 140741111 1 + C T UCEC 140741124 + 140741104 140741144 41 GGCGCCTCTATCGCTCAAATCAGTGCCTCTGACCCTGACTT GGCGCCTTTATCGCTCAAATCAGTGCCTCTGACCCTGACTT < 41bp 1 0.250040774310189 1 0.658908247947693 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741124 chr5:140741111 nonsynonymous SNV 0.056 3 8 hm5C_associated_SNPs_41705 0 0 0 0 0 exosome 1 0.500231644106615 0.682183504104614 0.999536711786769 hm5C_site_40843 DeepMRMD:0.682183504104614;iRNA_m5C:0.999536711786769 40844 chr17 37358661 37358661 1 + G A UCEC 37358657 + 37358637 37358677 41 GGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCA GGCTCGATGCCGGAAAAACACCTTAGCCCGCCGGAAGGGCA < 41bp 1 0.343308576183798 1 0.0416496694087982 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358657 chr17:37358661 synonymous SNV . 0 25 hm5C_associated_SNPs_41706 0 0 1 0 2 chromatin 1 0.500231650758612 1 0.999536698482775 hm5C_site_40844 DeepMRMD:1;iRNA_m5C:0.999536698482775 40845 chr17 37358661 37358661 1 + G A UCEC 37358663 + 37358643 37358683 41 ATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACA ATGCCGGAAAAACACCTTAGCCCGCCGGAAGGGCAGGCACA < 41bp 1 0.268056613206942 1 0.0618149638175964 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358663 chr17:37358661 synonymous SNV . 0 19 hm5C_associated_SNPs_41707 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_40845 DeepMRMD:1;iRNA_m5C:0.999536712157815 40846 chr17 37358661 37358661 1 + G A UCEC 37358664 + 37358644 37358684 41 TGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCACAT TGCCGGAAAAACACCTTAGCCCGCCGGAAGGGCAGGCACAT < 41bp 1 0.326409030525545 1 0.247011244297028 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358664 chr17:37358661 synonymous SNV . 0 18 hm5C_associated_SNPs_41708 0 0 1 0 2 chromatin 1 0.500231643921117 1 0.999536712157767 hm5C_site_40846 DeepMRMD:1;iRNA_m5C:0.999536712157767 40847 chr17 37358661 37358661 1 + G A UCEC 37358680 + 37358660 37358700 41 TGGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGTGT TAGCCCGCCGGAAGGGCAGGCACATGGGCATAGGTAAGTGT < 41bp 1 0.299856082072505 1 0.145772457122803 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358680 chr17:37358661 synonymous SNV . 0 2 hm5C_associated_SNPs_41711 0 0 1 0 2 chromatin 1 0.500233096843877 1 0.999533806312245 hm5C_site_40847 DeepMRMD:1;iRNA_m5C:0.999533806312245 40848 chr12 22208525 22208525 1 + G T UCEC 22208514 + 22208494 22208534 41 TCTCTGTTGTGAGACGCCATCAGTTTCGATGGAGTGAAATT TCTCTGTTGTGAGACGCCATCAGTTTCGATGTAGTGAAATT < 41bp 1 0.382470747645039 1 0.193571805953979 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22208514 chr12:22208525 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_41712 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40848 DeepMRMD:1;iRNA_m5C:0.999536712157815 40849 chr19 42373177 42373177 1 + G T UCEC 42373186 + 42373166 42373206 41 GGGGGACGTCAGAGAAACGGCGTCATGCCCAGCCACTTCAG GGGGGACGTCATAGAAACGGCGTCATGCCCAGCCACTTCAG < 41bp 1 0.614710971293152 1 0.389224916696548 experiment 0.770578057413695 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373186 chr19:42373177 stopgain 1.000 2 12 hm5C_associated_SNPs_41713 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_40849 DeepMRMD:1;iRNA_m5C:0.999536712157815 40850 chr19 42373177 42373177 1 + G T UCEC 42373193 + 42373173 42373213 41 GTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGC GTCATAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGC < 41bp 1 0.245236967655797 1 0.126057147979736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373193 chr19:42373177 stopgain 1.000 2 5 hm5C_associated_SNPs_41714 0 0 1 0 1 Cytosol 1 0.500231643937639 1 0.999536712124722 hm5C_site_40850 DeepMRMD:1;iRNA_m5C:0.999536712124722 40851 chr19 42373177 42373177 1 + G T UCEC 42373194 + 42373174 42373214 41 TCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCT TCATAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCT < 41bp 1 0.259472025076371 1 0.108651369810104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373194 chr19:42373177 stopgain 1.000 2 4 hm5C_associated_SNPs_41715 0 0 1 0 1 Cytosol 1 0.500231780710116 1 0.999536438579768 hm5C_site_40851 DeepMRMD:1;iRNA_m5C:0.999536438579768 40852 chr17 33310468 33310468 1 + G A UCEC 33310485 + 33310465 33310505 41 AGAGCGGGCCCGGGCCACCACAAAAAAAATCGAGGACCTCA AGAACGGGCCCGGGCCACCACAAAAAAAATCGAGGACCTCA < 41bp 1 0.684605771026172 1 0.531233608722687 experiment 0.630788457947657 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33310485 chr17:33310468 synonymous SNV . 0 4 hm5C_associated_SNPs_41717 0 0 1 0 0 Cytosol 1 0.500231643921092 0.937532782554626 0.999536712157815 hm5C_site_40852 DeepMRMD:0.937532782554626;iRNA_m5C:0.999536712157815 40853 chr5 140481786 140481786 1 + C T UCEC 140481767 + 140481747 140481787 41 CCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCG CCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTTG < 41bp 1 0.661422500763551 1 0.101851582527161 experiment 0.677154998472898 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140481767 chr5:140481786 nonsynonymous SNV 0.321 1 40 hm5C_associated_SNPs_41718 0 0 0 0 0 exosome 1 0.500231642349969 1 0.999536715300062 hm5C_site_40853 DeepMRMD:1;iRNA_m5C:0.999536715300062 40854 chr13 115037788 115037788 1 + C T UCEC 115037793 + 115037773 115037813 41 AGACTGCAGAAGAAACGGGGCTTACGCCATTGGAAACCTCA AGACTGCAGAAGAAATGGGGCTTACGCCATTGGAAACCTCA < 41bp 1 0.0858067971884619 1 0.0577613413333893 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDC16 ENSG00000130177 CDS Human protein_coding chr13:115037793 chr13:115037788 nonsynonymous SNV 0.514 1 16 hm5C_associated_SNPs_41719 0 0 1 0 0 Ribosome 1 0.500231597270662 1 0.999536805458675 hm5C_site_40854 DeepMRMD:1;iRNA_m5C:0.999536805458675 40855 chr3 32169680 32169680 1 + G A UCEC 32169667 + 32169647 32169687 41 TTTGAAGAAACAGTGAATGGCAGAAAACTGACAGACATCAT TTTGAAGAAACAGTGAATGGCAGAAAACTGACAAACATCAT < 41bp 1 0.630923541073898 1 0.339326560497284 experiment 0.738152917852203 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPD1L ENSG00000152642 CDS Human protein_coding chr3:32169667 chr3:32169680 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_41720 0 0 0 0 1 Cytosol 1 0.500231643922181 1 0.999536712155637 hm5C_site_40855 DeepMRMD:1;iRNA_m5C:0.999536712155637 40856 chr7 4796802 4796802 1 + G A UCEC 4796801 + 4796781 4796821 41 TCCTGCTTCCGCACCCCCTTCGGGCCTCTGTCCTCAAGGTA TCCTGCTTCCGCACCCCCTTCAGGCCTCTGTCCTCAAGGTA < 41bp 1 0.298901321965019 1 0.678507328033447 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796801 chr7:4796802 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_41721 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.642985343933106 0.999536712157815 hm5C_site_40856 DeepMRMD:0.642985343933106;iRNA_m5C:0.999536712157815 40857 chr2 86968139 86968139 1 + G A UCEC 86968142 + 86968122 86968162 41 TTCAAAAATTGGCCTCCGACCACAAAGACATCCACAGCAGT TTCAAAAATTGGCCTCCAACCACAAAGACATCCACAGCAGT < 41bp 1 0.494991793220183 1 0.822614431381226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RMND5A ENSG00000153561 CDS Human protein_coding chr2:86968142 chr2:86968139 nonsynonymous SNV 0.834 2 18 hm5C_associated_SNPs_41722 0 0 0 0 2 Ribosome 1 0.500231643921093 0.354771137237548 0.999536712157815 hm5C_site_40857 DeepMRMD:0.354771137237548;iRNA_m5C:0.999536712157815 40858 chr4 186231909 186231909 1 + C A UCEC 186231908 + 186231888 186231928 41 GAATCCGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAG GAATCCGAATCCTGGGAGGCCATGCCTATGACCAGCAAGAG < 41bp 1 0.200891479237794 1 0.269569873809814 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX25 ENSG00000109762 CDS Human protein_coding chr4:186231908 chr4:186231909 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_41723 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643935472 1 0.999536712129056 hm5C_site_40858 DeepMRMD:1;iRNA_m5C:0.999536712129056 40859 chr12 57919784 57919784 1 + A C UCEC 57919787 + 57919767 57919807 41 GCACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCA GCACTTTACAGGGCCGACGGCCCCGTGCCCAGGCACCCTCA < 41bp 1 0.290278899974723 1 0.667764604091644 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919787 chr12:57919784 synonymous SNV . 0 18 hm5C_associated_SNPs_41724 0 0 1 0 0 chromatin 1 0.500231644292787 0.664470791816712 0.999536711414426 hm5C_site_40859 DeepMRMD:0.664470791816712;iRNA_m5C:0.999536711414426 40860 chr12 57919784 57919784 1 + A C UCEC 57919788 + 57919768 57919808 41 CACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAG CACTTTACAGGGCCGACGGCCCCGTGCCCAGGCACCCTCAG < 41bp 1 0.232669288341939 1 0.658067941665649 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919788 chr12:57919784 synonymous SNV . 0 17 hm5C_associated_SNPs_41725 0 0 1 0 0 chromatin 1 0.500231643921087 0.683864116668702 0.999536712157827 hm5C_site_40860 DeepMRMD:0.683864116668702;iRNA_m5C:0.999536712157827 40861 chr12 57919784 57919784 1 + A C UCEC 57919789 + 57919769 57919809 41 ACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGC ACTTTACAGGGCCGACGGCCCCGTGCCCAGGCACCCTCAGC < 41bp 1 0.18124529053662 1 0.151373863220215 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919789 chr12:57919784 synonymous SNV . 0 16 hm5C_associated_SNPs_41726 0 0 1 0 0 chromatin 1 0.50023163846546 1 0.999536723069081 hm5C_site_40861 DeepMRMD:1;iRNA_m5C:0.999536723069081 40862 chr12 57919784 57919784 1 + A C UCEC 57919790 + 57919770 57919810 41 CTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCT CTTTACAGGGCCGACGGCCCCGTGCCCAGGCACCCTCAGCT < 41bp 1 0.263438326264907 1 0.485591113567352 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919790 chr12:57919784 synonymous SNV . 0 15 hm5C_associated_SNPs_41727 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_40862 DeepMRMD:1;iRNA_m5C:0.999536712157816 40863 chr12 57919784 57919784 1 + A C UCEC 57919794 + 57919774 57919814 41 ACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCC ACAGGGCCGACGGCCCCGTGCCCAGGCACCCTCAGCTTCCC < 41bp 1 0.274124529010929 1 0.149583607912064 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919794 chr12:57919784 synonymous SNV . 0 11 hm5C_associated_SNPs_41728 0 0 1 0 0 chromatin 1 0.500231643919911 1 0.999536712160177 hm5C_site_40863 DeepMRMD:1;iRNA_m5C:0.999536712160177 40864 chr12 57919784 57919784 1 + A C UCEC 57919795 + 57919775 57919815 41 CAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCA CAGGGCCGACGGCCCCGTGCCCAGGCACCCTCAGCTTCCCA < 41bp 1 0.277689735994096 1 0.0997693836688995 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919795 chr12:57919784 synonymous SNV . 0 10 hm5C_associated_SNPs_41729 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_40864 DeepMRMD:1;iRNA_m5C:0.999536712157814 40865 chr12 57919784 57919784 1 + A C UCEC 57919796 + 57919776 57919816 41 AGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCAC AGGGCCGACGGCCCCGTGCCCAGGCACCCTCAGCTTCCCAC < 41bp 1 0.568308088217957 1 0.857998847961426 experiment 0.863383823564087 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919796 chr12:57919784 synonymous SNV . 0 9 hm5C_associated_SNPs_41730 0 0 1 0 0 chromatin 1 0.500231643914187 0.284002304077148 0.999536712171626 hm5C_site_40865 DeepMRMD:0.284002304077148;iRNA_m5C:0.999536712171626 40866 chr12 57919784 57919784 1 + A C UCEC 57919800 + 57919780 57919820 41 CCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCT CCGACGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCT < 41bp 1 0.203648433187295 1 0.013521671295166 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919800 chr12:57919784 synonymous SNV . 0 5 hm5C_associated_SNPs_41731 0 0 1 0 0 chromatin 1 0.500231643918625 1 0.99953671216275 hm5C_site_40866 DeepMRMD:1;iRNA_m5C:0.99953671216275 40867 chr12 57919784 57919784 1 + A C UCEC 57919802 + 57919782 57919822 41 GAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCA GACGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCA < 41bp 1 0.0232918084531045 1 0.00995239615440369 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919802 chr12:57919784 synonymous SNV . 0 3 hm5C_associated_SNPs_41732 0 0 1 0 0 chromatin 1 0.50023164392102 1 0.999536712157959 hm5C_site_40867 DeepMRMD:1;iRNA_m5C:0.999536712157959 40868 chr12 57919784 57919784 1 + A C UCEC 57919803 + 57919783 57919823 41 AAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCAT ACGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCAT < 41bp 1 0.161734447450916 1 0.0307640433311462 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919803 chr12:57919784 synonymous SNV . 0 2 hm5C_associated_SNPs_41733 0 0 1 0 0 chromatin 1 0.500231643921094 1 0.999536712157812 hm5C_site_40868 DeepMRMD:1;iRNA_m5C:0.999536712157812 40869 chr12 57919784 57919784 1 + A C UCEC 57919804 + 57919784 57919824 41 AGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATC CGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATC < 41bp 1 0.462421060947425 1 0.0812933743000031 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919804 chr12:57919784 synonymous SNV . 0 1 hm5C_associated_SNPs_41734 0 0 1 0 0 chromatin 1 0.500231643920995 1 0.999536712158009 hm5C_site_40869 DeepMRMD:1;iRNA_m5C:0.999536712158009 40870 chr16 3117508 3117508 1 + G T UCEC 3117519 + 3117499 3117539 41 GACCCTGGAGGGACAAGGATCCGGCCCTTTGGTGCCAACTC GACCCTGGATGGACAAGGATCCGGCCCTTTGGTGCCAACTC < 41bp 1 0.485125354093641 1 0.479861348867416 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IL32 ENSG00000008517 CDS Human protein_coding chr16:3117519 chr16:3117508 nonsynonymous SNV 0.021 3 10 hm5C_associated_SNPs_41735 0 0 1 0 0 Ribosome 1 0.500231643919438 1 0.999536712161124 hm5C_site_40870 DeepMRMD:1;iRNA_m5C:0.999536712161124 40871 chr1 223943292 223943292 1 + C T UCEC 223943279 + 223943259 223943299 41 TGCACCTTCCTGGTGGGGCTCATTCAGAAGCACCGACGGCG TGCACCTTCCTGGTGGGGCTCATTCAGAAGCACTGACGGCG < 41bp 1 0.0689949246507603 1 0.0876302421092987 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943279 chr1:223943292 stopgain 1.000 1 34 hm5C_associated_SNPs_41736 0 0 1 0 1 Ribosome 1 0.500231643921098 1 0.999536712157804 hm5C_site_40871 DeepMRMD:1;iRNA_m5C:0.999536712157804 40872 chr1 223943292 223943292 1 + C T UCEC 223943301 + 223943281 223943321 41 TTCAGAAGCACCGACGGCGGCAGAGGAAGATGGGCGAGGAC TTCAGAAGCACTGACGGCGGCAGAGGAAGATGGGCGAGGAC < 41bp 1 0.681656227313799 1 0.705839931964874 experiment 0.636687545372402 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943301 chr1:223943292 stopgain 1.000 1 12 hm5C_associated_SNPs_41737 0 0 1 0 1 Ribosome 1 0.500231321900662 0.588320136070252 0.999537356198676 hm5C_site_40872 DeepMRMD:0.588320136070252;iRNA_m5C:0.999537356198676 40873 chr12 6936357 6936357 1 + G A UCEC 6936363 + 6936343 6936383 41 CCCATCTTTCCCCAGCTGACCCTGTGAGCCCAAGCAGGCCT CCCATCTTTCCCCAACTGACCCTGTGAGCCCAAGCAGGCCT < 41bp 1 0.163381389947793 1 0.0559065043926239 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR162 ENSG00000250510 CDS Human protein_coding chr12:6936363 chr12:6936357 synonymous SNV . 0 15 hm5C_associated_SNPs_41738 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643951078 1 0.999536712097844 hm5C_site_40873 DeepMRMD:1;iRNA_m5C:0.999536712097844 40874 chr14 97002279 97002279 1 + T G UCEC 97002283 + 97002263 97002303 41 ATACCCACAACAGAACTCCACGTACAATGTGTCCGTTTCAA ATACCCACAACAGAACGCCACGTACAATGTGTCCGTTTCAA < 41bp 1 0.0766484310602703 1 0.129134148359299 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97002283 chr14:97002279 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_41739 0 0 1 0 2 Ribosome 1 0.500218551444839 1 0.999562897110322 hm5C_site_40874 DeepMRMD:1;iRNA_m5C:0.999562897110322 40875 chr8 87447753 87447753 1 + C T UCEC 87447738 + 87447718 87447758 41 TTTAGGTGGAAGCTTGCTCACTTCCGTTATTTGTGCCAGGT TTTAGGTGGAAGCTTGCTCACTTCCGTTATTTGTGTCAGGT < 41bp 1 0.254721662246247 1 0.0919767618179321 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWP1 ENSG00000123124 CDS Human protein_coding chr8:87447738 chr8:87447753 synonymous SNV . 0 36 hm5C_associated_SNPs_41740 0 0 1 0 2 Cytosol 1 0.500231643834532 1 0.999536712330937 hm5C_site_40875 DeepMRMD:1;iRNA_m5C:0.999536712330937 40876 chr7 94917919 94917919 1 + G A UCEC 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCGTTCAGGAATGGAGTGTGCAACAGGTTTCTCACTGGTTA < 41bp 1 0.446392850277473 1 0.0900022387504578 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917919 synonymous SNV . 0 23 hm5C_associated_SNPs_41741 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_40876 DeepMRMD:1;iRNA_m5C:0.999536712157816 40877 chr4 48384726 48384726 1 + T C UCEC 48384732 + 48384712 48384752 41 TATGCATCATGCAGTATACCCTGCTGTTAACAGGTTTTCAC TATGCATCATGCAGCATACCCTGCTGTTAACAGGTTTTCAC < 41bp 1 0.638178143473855 1 0.0590055584907532 experiment 0.72364371305229 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48384732 chr4:48384726 nonsynonymous SNV 0.981 0 15 hm5C_associated_SNPs_41743 0 0 1 0 0 Cytosol 1 0.500231642360778 1 0.999536715278445 hm5C_site_40877 DeepMRMD:1;iRNA_m5C:0.999536715278445 40878 chr7 156746931 156746931 1 + G T UCEC 156746911 + 156746891 156746931 41 GCTCTCATGGGTGCCTGCGTCACTGCCTCGGCCATGCCCAG GCTCTCATGGGTGCCTGCGTCACTGCCTCGGCCATGCCCAT < 41bp 1 0.520629086643166 1 0.339345991611481 experiment 0.958741826713668 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NOM1 ENSG00000146909 CDS Human protein_coding chr7:156746911 chr7:156746931 nonsynonymous SNV 0.854 1 41 hm5C_associated_SNPs_41744 0 0 1 0 1 Nucleus 1 0.500232686201284 1 0.999534627597431 hm5C_site_40878 DeepMRMD:1;iRNA_m5C:0.999534627597431 40879 chr19 54377330 54377330 1 + G A UCEC 54377326 + 54377306 54377346 41 CTGCTGAAGGTGCTGGAGACCTTCGTTGCCTGCATCATCTT CTGCTGAAGGTGCTGGAGACCTTCATTGCCTGCATCATCTT < 41bp 1 0.573742630431566 1 0.623627305030823 experiment 0.852514739136867 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYADM ENSG00000179820 CDS Human protein_coding chr19:54377326 chr19:54377330 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_41745 0 0 1 0 0 Nucleus 1 0.500231643909984 0.752745389938354 0.999536712180033 hm5C_site_40879 DeepMRMD:0.752745389938354;iRNA_m5C:0.999536712180033 40880 chr12 56536126 56536126 1 + C A UCEC 56536133 + 56536113 56536153 41 CCTCTCAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACC CCTCTCAGAGCTCATCGTGGCTGACCAGCTCTGCTTGGACC < 41bp 1 0.227376799722003 1 0.0555998384952545 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536133 chr12:56536126 nonsynonymous SNV 0.178 2 14 hm5C_associated_SNPs_41746 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643916213 1 0.999536712167575 hm5C_site_40880 DeepMRMD:1;iRNA_m5C:0.999536712167575 40881 chr12 56536126 56536126 1 + C A UCEC 56536138 + 56536118 56536158 41 CAGAGCTCCTCGTGGCTGACCAGCTCTGCTTGGACCGCTGG CAGAGCTCATCGTGGCTGACCAGCTCTGCTTGGACCGCTGG < 41bp 1 0.399350404347091 1 0.177325695753098 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536138 chr12:56536126 nonsynonymous SNV 0.178 2 9 hm5C_associated_SNPs_41747 0 0 1 0 2 Endoplasmic reticulum 1 0.500232483774865 1 0.99953503245027 hm5C_site_40881 DeepMRMD:1;iRNA_m5C:0.99953503245027 40882 chr15 75942421 75942421 1 + C T UCEC 75942405 + 75942385 75942425 41 GGACCACATGACCAGCCACCCTGTGCTCTCCCAGTACGAAG GGACCACATGACCAGCCACCCTGTGCTCTCCCAGTATGAAG < 41bp 1 0.241739534737144 1 0.0706231296062469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX33 ENSG00000173548 CDS Human protein_coding chr15:75942405 chr15:75942421 synonymous SNV . 0 37 hm5C_associated_SNPs_41748 0 0 0 0 0 membrane 1 0.500231432265567 1 0.999537135468865 hm5C_site_40882 DeepMRMD:1;iRNA_m5C:0.999537135468865 40883 chr6 27101083 27101083 1 + G A UCEC 27101063 + 27101043 27101083 41 GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCA < 41bp 1 0.410299953393731 1 0.159987241029739 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101063 chr6:27101083 nonsynonymous SNV 0.661 4 41 hm5C_associated_SNPs_41750 0 0 1 0 0 Ribosome 1 0.500231642887501 1 0.999536714224998 hm5C_site_40883 DeepMRMD:1;iRNA_m5C:0.999536714224998 40884 chr17 48631708 48631708 1 + G A UCEC 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TATGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG < 41bp 1 0.0385182147708581 1 0.0193673670291901 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631708 nonsynonymous SNV 0.997 2 2 hm5C_associated_SNPs_41752 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40884 DeepMRMD:1;iRNA_m5C:0.999536712157815 40885 chr16 29912751 29912751 1 + C T UCEC 29912748 + 29912728 29912768 41 GTGAGCCGGCGGCTTCGGGCCTACGCAAGGCGCTACTCCTG GTGAGCCGGCGGCTTCGGGCCTATGCAAGGCGCTACTCCTG < 41bp 1 0.431225243387685 1 0.193876713514328 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASPHD1 ENSG00000174939 CDS Human protein_coding chr16:29912748 chr16:29912751 synonymous SNV . 0 24 hm5C_associated_SNPs_41753 0 0 1 0 0 nucleus 1 0.500231643921114 1 0.999536712157771 hm5C_site_40885 DeepMRMD:1;iRNA_m5C:0.999536712157771 40886 chr19 52705261 52705261 1 + G A UCEC 52705272 + 52705252 52705292 41 AAAGGACCCGAAGTGAGCTTCTGCCTTTCCTTACAGGTAAC AAAGGACCCAAAGTGAGCTTCTGCCTTTCCTTACAGGTAAC < 41bp 1 0.278896412362497 1 0.320113122463226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705272 chr19:52705261 nonsynonymous SNV 0.980 2 10 hm5C_associated_SNPs_41754 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_40886 DeepMRMD:1;iRNA_m5C:0.999536712157815 40887 chr20 31374349 31374349 1 + G T UCEC 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGTCACAGGCCTTCCCCACGTTCCACCCGAGGCCG < 41bp 1 0.302288905614431 1 0.43871220946312 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374349 nonsynonymous SNV 0.773 2 9 hm5C_associated_SNPs_41755 0 0 0 0 1 chromatin 1 0.500231643909013 1 0.999536712181974 hm5C_site_40887 DeepMRMD:1;iRNA_m5C:0.999536712181974 40888 chr20 31374349 31374349 1 + G T UCEC 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGAGAGTCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG < 41bp 1 0.607246698347951 1 0.52160108089447 experiment 0.785506603304099 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374349 nonsynonymous SNV 0.773 2 8 hm5C_associated_SNPs_41756 0 0 0 0 1 chromatin 1 0.500231643474489 0.95679783821106 0.999536713051022 hm5C_site_40888 DeepMRMD:0.95679783821106;iRNA_m5C:0.999536713051022 40889 chr1 249212313 249212313 1 + G A UCEC 249212301 + 249212281 249212321 41 CAGCTGCATAGAATCTGCTGCCAAGATGCCCAGGTGGACCT CAGCTGCATAGAATCTGCTGCCAAGATGCCCAAGTGGACCT < 41bp 1 0.159122889881342 1 0.062813937664032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212301 chr1:249212313 synonymous SNV . 0 33 hm5C_associated_SNPs_41757 0 0 0 0 0 Cytosol 1 0.500225382301182 1 0.999549235397637 hm5C_site_40889 DeepMRMD:1;iRNA_m5C:0.999549235397637 40890 chr17 48433483 48433483 1 + G A UCEC 48433472 + 48433452 48433492 41 TTCCACACGGTGCTGGAGAACAGCCTGGCCTGTGAGACCCT TTCCACACGGTGCTGGAGAACAGCCTGGCCTATGAGACCCT < 41bp 1 0.388829124941662 1 0.267741173505783 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48433472 chr17:48433483 nonsynonymous SNV 0.995 4 32 hm5C_associated_SNPs_41758 0 0 1 0 1 nucleolus 1 0.500231644372016 1 0.999536711255969 hm5C_site_40890 DeepMRMD:1;iRNA_m5C:0.999536711255969 40891 chr22 42301542 42301542 1 + C T UCEC 42301538 + 42301518 42301558 41 TCCTTCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGC TCCTTCCTCTCCTCCCCGGGCCAGTGGGCAGTGCTGCTGGC < 41bp 1 0.258896773465347 1 0.161682993173599 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42301538 chr22:42301542 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_41759 0 0 1 0 1 Ribosome 1 0.500231643925108 1 0.999536712149784 hm5C_site_40891 DeepMRMD:1;iRNA_m5C:0.999536712149784 40892 chr22 42301542 42301542 1 + C T UCEC 42301539 + 42301519 42301559 41 CCTTCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGCC CCTTCCTCTCCTCCCCGGGCCAGTGGGCAGTGCTGCTGGCC < 41bp 1 0.366291296610356 1 0.50411856174469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42301539 chr22:42301542 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_41760 0 0 1 0 1 Ribosome 1 0.500231643921092 0.99176287651062 0.999536712157815 hm5C_site_40892 DeepMRMD:0.99176287651062;iRNA_m5C:0.999536712157815 40893 chr2 29344264 29344264 1 + G T UCEC 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TATAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG < 41bp 1 0.0905002454832569 1 0.124002516269684 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344264 stopgain 1.000 1 3 hm5C_associated_SNPs_41761 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40893 DeepMRMD:1;iRNA_m5C:0.999536712157815 40894 chr4 25396323 25396323 1 + G A UCEC 25396309 + 25396289 25396329 41 GTAGTGCTGAACTTCAGACTCTCTTGATGAATCAGTTAACA GTAGTGCTGAACTTCAGACTCTCTTGATGAATCAATTAACA < 41bp 1 0.20059627517003 1 0.110281109809875 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25396309 chr4:25396323 synonymous SNV . 0 35 hm5C_associated_SNPs_41762 0 0 1 0 2 chromatin 1 0.500238393989175 1 0.99952321202165 hm5C_site_40894 DeepMRMD:1;iRNA_m5C:0.99952321202165 40895 chr12 6879138 6879138 1 + G T UCEC 6879124 + 6879104 6879144 41 TGAGGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGG TGAGGAGGAAGAAGAAGAAACTGCCGAGGATGGATAGGAGG < 41bp 1 0.380178888483959 1 0.27869039773941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6879124 chr12:6879138 stopgain 1.000 0 35 hm5C_associated_SNPs_41763 0 0 1 1 2 Ribosome 1 0.500231643927767 1 0.999536712144465 hm5C_site_40895 DeepMRMD:1;iRNA_m5C:0.999536712144465 40896 chr12 6879138 6879138 1 + G T UCEC 6879127 + 6879107 6879147 41 GGAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAG GGAGGAAGAAGAAGAAACTGCCGAGGATGGATAGGAGGAAG < 41bp 1 0.401487255442093 1 0.670178651809692 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMS ENSG00000159335 CDS Human protein_coding chr12:6879127 chr12:6879138 stopgain 1.000 0 32 hm5C_associated_SNPs_41764 0 0 1 1 2 Ribosome 1 0.500231643921093 0.659642696380616 0.999536712157815 hm5C_site_40896 DeepMRMD:0.659642696380616;iRNA_m5C:0.999536712157815 40897 chr12 6879138 6879138 1 + G T UCEC 6879128 + 6879108 6879148 41 GAGGAAGAAGAAGAAACTGCCGAGGATGGAGAGGAGGAAGA GAGGAAGAAGAAGAAACTGCCGAGGATGGATAGGAGGAAGA < 41bp 1 0.685873531600067 1 0.794931769371033 experiment 0.628252936799867 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6879128 chr12:6879138 stopgain 1.000 0 31 hm5C_associated_SNPs_41765 0 0 1 1 2 Ribosome 1 0.500231643921094 0.410136461257934 0.999536712157811 hm5C_site_40897 DeepMRMD:0.410136461257934;iRNA_m5C:0.999536712157811 40898 chr19 35828880 35828880 1 + A G UCEC 35828874 + 35828854 35828894 41 GAAGTACTGCTGTCAGGTCTCCAATGACGTGGGCCCGGGAA GAAGTACTGCTGTCAGGTCTCCAATGGCGTGGGCCCGGGAA < 41bp 1 0.290913598588205 1 0.827037036418915 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD22 ENSG00000012124 CDS Human protein_coding chr19:35828874 chr19:35828880 nonsynonymous SNV 0.026 1 27 hm5C_associated_SNPs_41766 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643935225 0.34592592716217 0.99953671212955 hm5C_site_40898 DeepMRMD:0.34592592716217;iRNA_m5C:0.99953671212955 40899 chr2 3627702 3627702 1 + G A UCEC 3627693 + 3627673 3627713 41 TGCTTACCTTTTAAACTATTCTTTTAGCCGTACTCTGACAG TGCTTACCTTTTAAACTATTCTTTTAGCCATACTCTGACAG < 41bp 1 0.0850283282549033 1 0.0231726467609406 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS7 ENSG00000171863 CDS Human protein_coding chr2:3627693 chr2:3627702 nonsynonymous SNV 0.482 2 30 hm5C_associated_SNPs_41767 0 0 1 0 1 Nucleus 1 0.500231645388707 1 0.999536709222587 hm5C_site_40899 DeepMRMD:1;iRNA_m5C:0.999536709222587 40900 chr3 13672884 13672884 1 + C T UCEC 13672900 + 13672880 13672920 41 TCAACGTGCCAGGGAGCTACCAGTGTGCATGCCCTGAGCAG TCAATGTGCCAGGGAGCTACCAGTGTGCATGCCCTGAGCAG < 41bp 1 0.607734523357273 1 0.514852464199066 experiment 0.784530953285453 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13672900 chr3:13672884 synonymous SNV . 0 5 hm5C_associated_SNPs_41768 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643763355 0.970295071601868 0.999536712473289 hm5C_site_40900 DeepMRMD:0.970295071601868;iRNA_m5C:0.999536712473289 40901 chr22 31998611 31998611 1 + C T UCEC 31998614 + 31998594 31998634 41 CCATCCTTCACGCAGAGCGACAGCTTCTGTATAGGTCTTGG CCATCCTTCACGCAGAGTGACAGCTTCTGTATAGGTCTTGG < 41bp 1 0.241636618917866 1 0.160936117172241 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SFI1 ENSG00000198089 CDS Human protein_coding chr22:31998614 chr22:31998611 stopgain 0.364 0 18 hm5C_associated_SNPs_41769 0 0 0 0 1 chromatin 1 0.500231643919971 1 0.999536712160057 hm5C_site_40901 DeepMRMD:1;iRNA_m5C:0.999536712160057 40902 chr19 42373186 42373186 1 + C T UCEC 42373193 + 42373173 42373213 41 GTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGC GTCAGAGAAACGGTGTCATGCCCAGCCACTTCAGCCGAGGC < 41bp 1 0.281718117043469 1 0.123301088809967 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373193 chr19:42373186 nonsynonymous SNV 0.990 1 14 hm5C_associated_SNPs_41770 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_40902 DeepMRMD:1;iRNA_m5C:0.999536712157816 40903 chr19 42373186 42373186 1 + C T UCEC 42373194 + 42373174 42373214 41 TCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCT TCAGAGAAACGGTGTCATGCCCAGCCACTTCAGCCGAGGCT < 41bp 1 0.254849635961714 1 0.190955430269241 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373194 chr19:42373186 nonsynonymous SNV 0.990 1 13 hm5C_associated_SNPs_41771 0 0 1 0 2 Cytosol 1 0.500232814906633 1 0.999534370186734 hm5C_site_40903 DeepMRMD:1;iRNA_m5C:0.999534370186734 40904 chr19 42373186 42373186 1 + C T UCEC 42373198 + 42373178 42373218 41 AGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAA AGAAACGGTGTCATGCCCAGCCACTTCAGCCGAGGCTCCAA < 41bp 1 0.167697793791989 1 0.218566119670868 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373198 chr19:42373186 nonsynonymous SNV 0.990 1 9 hm5C_associated_SNPs_41772 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40904 DeepMRMD:1;iRNA_m5C:0.999536712157815 40905 chr19 42373186 42373186 1 + C T UCEC 42373199 + 42373179 42373219 41 GAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAG GAAACGGTGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAG < 41bp 1 0.25312967487762 1 0.331703394651413 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373199 chr19:42373186 nonsynonymous SNV 0.990 1 8 hm5C_associated_SNPs_41773 0 0 1 0 2 Cytosol 1 0.500231643646179 1 0.999536712707641 hm5C_site_40905 DeepMRMD:1;iRNA_m5C:0.999536712707641 40906 chr9 139244096 139244096 1 + C T UCEC 139244104 + 139244084 139244124 41 AGCAGGGACTCGCTACCCCTCCCCGTGAGGAGCAGGAAGTA AGCAGGGACTCGTTACCCCTCCCCGTGAGGAGCAGGAAGTA < 41bp 1 0.345868644417039 1 0.505221247673035 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139244104 chr9:139244096 synonymous SNV . 0 13 hm5C_associated_SNPs_41774 0 0 0 0 1 Cytosol 1 0.500231643920196 0.98955750465393 0.999536712159609 hm5C_site_40906 DeepMRMD:0.98955750465393;iRNA_m5C:0.999536712159609 40907 chr19 13054422 13054422 1 + C T UCEC 13054404 + 13054384 13054424 41 ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGA ATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAATGA < 41bp 1 0.581617850628549 1 0.0948998928070068 experiment 0.836764298742902 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054404 chr19:13054422 synonymous SNV . 0 39 hm5C_associated_SNPs_41775 0 0 1 0 2 Ribosome 1 0.500482947345894 1 0.999034105308212 hm5C_site_40907 DeepMRMD:1;iRNA_m5C:0.999034105308212 40908 chr19 13054422 13054422 1 + C T UCEC 13054406 + 13054386 13054426 41 CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGA CACCAACGATGAGGCATACGCTGAGGAGTTTGGCAATGAGA < 41bp 1 0.684473064250232 1 0.215155065059662 experiment 0.631053871499536 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054406 chr19:13054422 synonymous SNV . 0 37 hm5C_associated_SNPs_41776 0 0 1 0 2 Ribosome 1 0.500236658169759 1 0.999526683660481 hm5C_site_40908 DeepMRMD:1;iRNA_m5C:0.999526683660481 Body mass index 40909 chr19 13054422 13054422 1 + C T UCEC 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAATGAGACGTGGGGCGTAAC < 41bp 1 0.412209204730871 1 0.298320233821869 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054422 synonymous SNV . 0 24 hm5C_associated_SNPs_41777 0 0 1 0 2 Ribosome 1 0.500230736862515 1 0.999538526274971 hm5C_site_40909 DeepMRMD:1;iRNA_m5C:0.999538526274971 40910 chr7 99722500 99722500 1 + G T UCEC 99722514 + 99722494 99722534 41 GACCGAGAAGATCTTTGACCCTTGCCTTTGAGCCCCCAGGA GACCGATAAGATCTTTGACCCTTGCCTTTGAGCCCCCAGGA < 41bp 1 0.47163126167233 1 0.186144560575485 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99722514 chr7:99722500 stopgain 0.827 0 7 hm5C_associated_SNPs_41779 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40910 DeepMRMD:1;iRNA_m5C:0.999536712157815 40911 chr17 78318485 78318485 1 + G A UCEC 78318498 + 78318478 78318518 41 CGTACACGTGTACCCCAGTTCAGTTTTCTTGACATCTTCCC CGTACACATGTACCCCAGTTCAGTTTTCTTGACATCTTCCC < 41bp 1 0.0486989570692512 1 0.0277711749076843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78318498 chr17:78318485 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_41780 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40911 DeepMRMD:1;iRNA_m5C:0.999536712157815 40912 chr17 16335482 16335482 1 + C T UCEC 16335468 + 16335448 16335488 41 GCGAGCTGGCCTTCCAGGAGCAGCTGCACTTCCGCGGCATG GCGAGCTGGCCTTCCAGGAGCAGCTGCACTTCCGTGGCATG < 41bp 1 0.420786582859371 1 0.488622337579727 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16335468 chr17:16335482 synonymous SNV . 0 35 hm5C_associated_SNPs_41781 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40912 DeepMRMD:1;iRNA_m5C:0.999536712157815 40913 chr7 99702529 99702529 1 + G T UCEC 99702547 + 99702527 99702567 41 GAGATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA GATATTCGGCTCAAGAGCTTCCTTCCTAGCGGCTCTGGTGA < 41bp 1 0.0253882551929494 1 0.070514440536499 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702547 chr7:99702529 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_41782 0 0 1 0 2 Cytosol 1 0.500231705368695 1 0.99953658926261 hm5C_site_40913 DeepMRMD:1;iRNA_m5C:0.99953658926261 40914 chr16 69353373 69353373 1 + G C UCEC 69353363 + 69353343 69353383 41 AAATCCTACCTGGCCAAAGCCGTGGCAACAGAGGCCAACAA AAATCCTACCTGGCCAAAGCCGTGGCAACACAGGCCAACAA < 41bp 1 0.657900941847595 1 0.733780741691589 experiment 0.684198116304809 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69353363 chr16:69353373 nonsynonymous SNV 0.928 5 31 hm5C_associated_SNPs_41783 0 0 1 0 2 Cytosol 1 0.500231643920803 0.532438516616822 0.999536712158395 hm5C_site_40914 DeepMRMD:0.532438516616822;iRNA_m5C:0.999536712158395 40915 chr1 237044065 237044065 1 + G A UCEC 237044057 + 237044037 237044077 41 TCTGACCCTTCTTTTTAGAACCCACACAGCAGTTAAAATAG TCTGACCCTTCTTTTTAGAACCCACACAACAGTTAAAATAG < 41bp 1 0.0275814994115586 1 0.101504981517792 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MTR ENSG00000116984 CDS Human protein_coding chr1:237044057 chr1:237044065 nonsynonymous SNV 0.983 4 29 hm5C_associated_SNPs_41784 0 0 1 0 2 Nucleus 1 0.500231644232622 1 0.999536711534756 hm5C_site_40915 DeepMRMD:1;iRNA_m5C:0.999536711534756 40916 chr2 231931714 231931714 1 + C T UCEC 231931696 + 231931676 231931716 41 GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATCGT GGAGAAAAAAAACCAATTGACCAGAGATTGGAAGGCATTGT < 41bp 1 0.568247637204165 1 0.0565168559551239 experiment 0.863504725591669 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD1 ENSG00000173692 CDS Human protein_coding chr2:231931696 chr2:231931714 synonymous SNV . 0 39 hm5C_associated_SNPs_41785 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40916 DeepMRMD:1;iRNA_m5C:0.999536712157815 40917 chr20 35857048 35857048 1 + C A UCEC 35857050 + 35857030 35857070 41 CAAGTTTGAACTGGATACCTCTGAAAGAAAGATTGAATTTG CAAGTTTGAACTGGATACATCTGAAAGAAAGATTGAATTTG < 41bp 1 0.595311462003828 1 0.248164415359497 experiment 0.809377075992345 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35857050 chr20:35857048 synonymous SNV . 0 19 hm5C_associated_SNPs_41786 0 0 1 0 2 Ribosome 1 0.500231643921032 1 0.999536712157937 hm5C_site_40917 DeepMRMD:1;iRNA_m5C:0.999536712157937 40918 chr17 45773493 45773493 1 + C T UCEC 45773473 + 45773453 45773493 41 GTGTGGGCCGCGGCCCGGCCCTCACCATGGAGTCCATGTTC GTGTGGGCCGCGGCCCGGCCCTCACCATGGAGTCCATGTTT < 41bp 1 0.442893850729704 1 0.0464185476303101 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBKBP1 ENSG00000198933 CDS Human protein_coding chr17:45773473 chr17:45773493 synonymous SNV . 0 41 hm5C_associated_SNPs_41787 0 0 1 0 0 Cytosol 1 0.500231643921022 1 0.999536712157957 hm5C_site_40918 DeepMRMD:1;iRNA_m5C:0.999536712157957 40919 chr5 170883761 170883761 1 + G A UCEC 170883778 + 170883758 170883798 41 CACGACGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACAC CACAACGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACAC < 41bp 1 0.359264481908938 1 0.294660300016403 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGF18 ENSG00000156427 CDS Human protein_coding chr5:170883778 chr5:170883761 synonymous SNV . 0 4 hm5C_associated_SNPs_41788 0 0 0 0 0 nucleolus 1 0.500233365813376 1 0.999533268373247 hm5C_site_40919 DeepMRMD:1;iRNA_m5C:0.999533268373247 40920 chr5 170883761 170883761 1 + G A UCEC 170883780 + 170883760 170883800 41 CGACGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACACAC CAACGGTGACCAAGAGGTCCCGTCGGATCCGGCCCACACAC < 41bp 1 0.523857292878653 1 0.411495119333267 experiment 0.952285414242694 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGF18 ENSG00000156427 CDS Human protein_coding chr5:170883780 chr5:170883761 synonymous SNV . 0 2 hm5C_associated_SNPs_41789 0 0 0 0 0 nucleolus 1 0.500231711484948 1 0.999536577030104 hm5C_site_40920 DeepMRMD:1;iRNA_m5C:0.999536577030104 40921 chr2 97875435 97875435 1 + C A UCEC 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGTCTTCTCGGAAAAAAACAGCCTTGAAGGTAATGAAAC < 41bp 1 0.30094449812287 1 0.347746133804321 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875435 nonsynonymous SNV 0.001 1 20 hm5C_associated_SNPs_41790 0 0 0 0 1 Cytosol 1 0.500231643921025 1 0.999536712157949 hm5C_site_40921 DeepMRMD:1;iRNA_m5C:0.999536712157949 40922 chr20 31374366 31374366 1 + G A UCEC 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGGCACAGGCCTTCCCCACATTCCACCCGAGGCCG < 41bp 1 0.296269880217913 1 0.440991252660751 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374366 nonsynonymous SNV 0.114 4 26 hm5C_associated_SNPs_41791 0 0 0 0 1 chromatin 1 0.500231643921406 1 0.999536712157188 hm5C_site_40922 DeepMRMD:1;iRNA_m5C:0.999536712157188 40923 chr2 183616835 183616835 1 + C T UCEC 183616850 + 183616830 183616870 41 AGTTACGAAGAGCATCAAATCTTCTTTATGGTCAGCTTAAG AGTTATGAAGAGCATCAAATCTTCTTTATGGTCAGCTTAAG < 41bp 1 0.395204138346272 1 0.328715145587921 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183616850 chr2:183616835 stopgain 0.999 1 6 hm5C_associated_SNPs_41794 0 0 1 0 2 Ribosome 1 0.500231643921916 1 0.999536712156168 hm5C_site_40923 DeepMRMD:1;iRNA_m5C:0.999536712156168 40924 chr9 20990202 20990202 1 + C T UCEC 20990218 + 20990198 20990238 41 GCCTCAGTGCCAGTTGGTTGCCATGGCATCAGGAGAATGGC GCCTTAGTGCCAGTTGGTTGCCATGGCATCAGGAGAATGGC < 41bp 1 0.146126759128015 1 0.0666433572769165 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990218 chr9:20990202 synonymous SNV . 0 5 hm5C_associated_SNPs_41795 0 0 0 0 1 Ribosome 1 0.500458950640314 1 0.999082098719372 hm5C_site_40924 DeepMRMD:1;iRNA_m5C:0.999082098719372 40925 chr11 64138924 64138924 1 + G A UCEC 64138919 + 64138899 64138939 41 GTCGCCTCCAAAGGGGCCCCCCGCCGAGCCAACGGCCCCCT GTCGCCTCCAAAGGGGCCCCCCGCCAAGCCAACGGCCCCCT < 41bp 1 0.256585946908087 1 0.228003263473511 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64138919 chr11:64138924 nonsynonymous SNV 0.907 2 26 hm5C_associated_SNPs_41796 0 0 0 0 0 chromatin 1 0.500231643921118 1 0.999536712157765 hm5C_site_40925 DeepMRMD:1;iRNA_m5C:0.999536712157765 40926 chrX 70516422 70516422 1 + C T UCEC 70516419 + 70516399 70516439 41 TTGTTCTTTCTTCCAGATTTCCTCGTCCTGTGACTGTGGAG TTGTTCTTTCTTCCAGATTTCCTTGTCCTGTGACTGTGGAG < 41bp 1 0.0442967169349459 1 0.0536989569664001 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516419 chrX:70516422 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_41797 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_40926 DeepMRMD:1;iRNA_m5C:0.999536712157815 40927 chrX 70516422 70516422 1 + C T UCEC 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTTGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT < 41bp 1 0.12112932995616 1 0.0692953169345856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516422 nonsynonymous SNV 0.996 2 3 hm5C_associated_SNPs_41798 0 0 1 0 2 Nucleus 1 0.500231534098202 1 0.999536931803596 hm5C_site_40927 DeepMRMD:1;iRNA_m5C:0.999536931803596 40928 chr1 12061536 12061536 1 + G T UCEC 12061544 + 12061524 12061564 41 TCCCAGGCCGGGGACCGCATCTTCTTTGTGTCTGCTAAGGA TCCCAGGCCGGGTACCGCATCTTCTTTGTGTCTGCTAAGGA < 41bp 1 0.223889508997605 1 0.0602515339851379 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MFN2 ENSG00000116688 CDS Human protein_coding chr1:12061544 chr1:12061536 nonsynonymous SNV 0.848 3 13 hm5C_associated_SNPs_41799 0 0 1 0 2 Ribosome 1 0.500231643676041 1 0.999536712647918 hm5C_site_40928 DeepMRMD:1;iRNA_m5C:0.999536712647918 40929 chr19 49686160 49686160 1 + G A UCEC 49686179 + 49686159 49686199 41 GGCCAGGGCTTCGGGGAGAGCGTAAGGACCGGGCAAAGCTG GACCAGGGCTTCGGGGAGAGCGTAAGGACCGGGCAAAGCTG < 41bp 1 0.69981793973544 1 0.6031294465065 experiment 0.60036412052912 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49686179 chr19:49686160 nonsynonymous SNV 0.010 0 2 hm5C_associated_SNPs_41800 0 0 1 0 0 chromatin 1 0.500231643921092 0.793741106987 0.999536712157815 hm5C_site_40929 DeepMRMD:0.793741106987;iRNA_m5C:0.999536712157815 40930 chr10 5963489 5963489 1 + G A UCEC 5963508 + 5963488 5963528 41 CGGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT CAGGTGACGGAAGGGGAATTCCCTTCAAGGATACATTTGAT < 41bp 1 0.0905634877755126 1 0.539206147193909 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5963508 chr10:5963489 nonsynonymous SNV 0.815 4 2 hm5C_associated_SNPs_41801 0 0 1 0 2 Ribosome 1 0.500231643921092 0.921587705612182 0.999536712157815 hm5C_site_40930 DeepMRMD:0.921587705612182;iRNA_m5C:0.999536712157815 40931 chr7 97822934 97822934 1 + G A UCEC 97822929 + 97822909 97822949 41 GCATCCCGCTCCCGAGGGCACCGCAGACTCAGAACCAGCCA GCATCCCGCTCCCGAGGGCACCGCAAACTCAGAACCAGCCA < 41bp 1 0.527627388127096 1 0.227830141782761 experiment 0.944745223745807 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97822929 chr7:97822934 nonsynonymous SNV 0.009 0 26 hm5C_associated_SNPs_41802 0 0 1 0 0 Nucleus 1 0.500242049164111 1 0.999515901671778 hm5C_site_40931 DeepMRMD:1;iRNA_m5C:0.999515901671778 40932 chrX 102632707 102632707 1 + G A UCEC 102632708 + 102632688 102632728 41 TGCGTATCCTTATGGGGGAGCTCTCTAATCACCATGACCAT TGCGTATCCTTATGGGGGAACTCTCTAATCACCATGACCAT < 41bp 1 0.136886041267427 1 0.0664883553981781 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632708 chrX:102632707 synonymous SNV . 0 20 hm5C_associated_SNPs_41803 0 0 1 0 0 Cytosol 1 0.500231643975827 1 0.999536712048347 hm5C_site_40932 DeepMRMD:1;iRNA_m5C:0.999536712048347 40933 chrX 102632707 102632707 1 + G A UCEC 102632712 + 102632692 102632732 41 TATCCTTATGGGGGAGCTCTCTAATCACCATGACCATCATG TATCCTTATGGGGGAACTCTCTAATCACCATGACCATCATG < 41bp 1 0.430896874574116 1 0.105573177337646 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632712 chrX:102632707 synonymous SNV . 0 16 hm5C_associated_SNPs_41804 0 0 1 0 0 Cytosol 1 0.500231643921096 1 0.999536712157809 hm5C_site_40933 DeepMRMD:1;iRNA_m5C:0.999536712157809 40934 chrX 102632707 102632707 1 + G A UCEC 102632725 + 102632705 102632745 41 GAGCTCTCTAATCACCATGACCATCATGATGAATTTTGCCT GAACTCTCTAATCACCATGACCATCATGATGAATTTTGCCT < 41bp 1 0.0236897406875552 1 0.0238809585571289 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632725 chrX:102632707 synonymous SNV . 0 3 hm5C_associated_SNPs_41805 0 0 1 0 0 Cytosol 1 0.500232216980012 1 0.999535566039977 hm5C_site_40934 DeepMRMD:1;iRNA_m5C:0.999535566039977 40935 chrX 102632707 102632707 1 + G A UCEC 102632726 + 102632706 102632746 41 AGCTCTCTAATCACCATGACCATCATGATGAATTTTGCCTT AACTCTCTAATCACCATGACCATCATGATGAATTTTGCCTT < 41bp 1 0.481519856241277 1 0.0362809300422668 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632726 chrX:102632707 synonymous SNV . 0 2 hm5C_associated_SNPs_41806 0 0 1 0 0 Cytosol 1 0.50023165231983 1 0.99953669536034 hm5C_site_40935 DeepMRMD:1;iRNA_m5C:0.99953669536034 40936 chr6 26446161 26446161 1 + C A UCEC 26446158 + 26446138 26446178 41 TCTGGTGGGGGTGTATCCTGCATCATCAGAAATTCCCTCCT TCTGGTGGGGGTGTATCCTGCATAATCAGAAATTCCCTCCT < 41bp 1 0.620873453523417 1 0.282510936260223 experiment 0.758253092953167 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26446158 chr6:26446161 synonymous SNV . 0 24 hm5C_associated_SNPs_41808 0 0 0 0 1 Endoplasmic reticulum 1 0.500012915735516 1 0.999974168528969 hm5C_site_40936 DeepMRMD:1;iRNA_m5C:0.999974168528969 40937 chr14 56119753 56119753 1 + G T UCEC 56119741 + 56119721 56119761 41 CTATTCTTTTTAAGGATCTTCAAGAAGAAAATGAATCTTTA CTATTCTTTTTAAGGATCTTCAAGAAGAAAATTAATCTTTA < 41bp 1 0.490147374132 1 0.753304243087769 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KTN1 ENSG00000126777 CDS Human protein_coding chr14:56119741 chr14:56119753 stopgain 0.987 0 33 hm5C_associated_SNPs_41809 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921103 0.493391513824462 0.999536712157795 hm5C_site_40937 DeepMRMD:0.493391513824462;iRNA_m5C:0.999536712157795 40938 chr15 25220519 25220519 1 + T C UCEC 25220529 + 25220509 25220549 41 TTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGA TTGGCAAGAGCAGCAAGATGCTGCAGCACATTGACTATAGA < 41bp 1 0.62311176284472 1 0.552311778068542 experiment 0.75377647431056 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNRPN ENSG00000128739 CDS Human protein_coding chr15:25220529 chr15:25220519 synonymous SNV . 0 11 hm5C_associated_SNPs_41810 0 0 1 2 1 Cytosol 1 0.500231641073762 0.895376443862916 0.999536717852475 hm5C_site_40938 DeepMRMD:0.895376443862916;iRNA_m5C:0.999536717852475 40939 chr19 10657581 10657581 1 + G A UCEC 10657575 + 10657555 10657595 41 GCTGTCAGGGTCAGCCTCTCCCAGCCGGTACCATGGGCCTG GCTGTCAGGGTCAGCCTCTCCCAGCCAGTACCATGGGCCTG < 41bp 1 0.419507125082789 1 0.642822504043579 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4D ENSG00000130734 CDS Human protein_coding chr19:10657575 chr19:10657581 nonsynonymous SNV 0.036 1 27 hm5C_associated_SNPs_41811 0 0 1 0 1 Ribosome 1 0.500231643921602 0.714354991912842 0.999536712156796 hm5C_site_40939 DeepMRMD:0.714354991912842;iRNA_m5C:0.999536712156796 40940 chr3 111667872 111667872 1 + G A UCEC 111667867 + 111667847 111667887 41 GTTTCCTGCTGATGCTGATGCTGTTGCCACTGAGCCTGCCA GTTTCCTGCTGATGCTGATGCTGTTACCACTGAGCCTGCCA < 41bp 1 0.204370412942683 1 0.0804378688335419 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111667867 chr3:111667872 nonsynonymous SNV 0.959 0 26 hm5C_associated_SNPs_41812 0 0 1 0 2 cytosol 1 0.500231643919279 1 0.999536712161441 hm5C_site_40940 DeepMRMD:1;iRNA_m5C:0.999536712161441 40941 chr10 60549133 60549133 1 + T C UCEC 60549151 + 60549131 60549171 41 TTTCAGTATCATTTAAACAGCGTTCCCGAATGTATGGTGCT TTCCAGTATCATTTAAACAGCGTTCCCGAATGTATGGTGCT < 41bp 1 0.0106049438341899 1 0.0555595755577087 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BICC1 ENSG00000122870 CDS Human protein_coding chr10:60549151 chr10:60549133 nonsynonymous SNV 0.999 1 3 hm5C_associated_SNPs_41813 0 0 1 0 1 nucleus 1 0.500231643921073 1 0.999536712157853 hm5C_site_40941 DeepMRMD:1;iRNA_m5C:0.999536712157853 40942 chr10 1090054 1090054 1 + G A UCEC 1090038 - 1090018 1090058 41 ACCTCGACAAGCAACAGGTTCAACTCCTGGCAGAGATGTGT ACCTTGACAAGCAACAGGTTCAACTCCTGGCAGAGATGTGT < 41bp 1 0.127956028581449 1 0.0865922272205353 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IDI1 ENSG00000067064 CDS Human protein_coding chr10:1090038 chr10:1090054 synonymous SNV . 0 5 hm5C_associated_SNPs_41814 0 0 1 0 1 Cytosol 1 0.500231643873036 1 0.999536712253928 hm5C_site_40942 DeepMRMD:1;iRNA_m5C:0.999536712253928 40943 chr3 47385302 47385302 1 + C T UCEC 47385299 + 47385279 47385319 41 CGCCTCTACGCTGTTGGGGGCTACGACGGACAGTCAAACCT CGCCTCTACGCTGTTGGGGGCTATGACGGACAGTCAAACCT < 41bp 1 0.117157220349757 1 0.154024600982666 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47385299 chr3:47385302 synonymous SNV . 0 24 hm5C_associated_SNPs_41815 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_40943 DeepMRMD:1;iRNA_m5C:0.999536712157815 40944 chr4 144390258 144390258 1 + C A UCEC 144390263 + 144390243 144390283 41 TGACCAACAGAAGACCTTGGCTCTAAAGAGTACCCGGGAAG TGACCAACAGAAGACATTGGCTCTAAAGAGTACCCGGGAAG < 41bp 1 0.622226040163296 1 0.774279475212097 experiment 0.755547919673407 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144390263 chr4:144390258 synonymous SNV . 0 16 hm5C_associated_SNPs_41816 0 0 0 0 1 chromatin 1 0.500231643921092 0.451441049575806 0.999536712157815 hm5C_site_40944 DeepMRMD:0.451441049575806;iRNA_m5C:0.999536712157815 40945 chr12 7080190 7080190 1 + G A UCEC 7080174 + 7080154 7080194 41 ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAAC ATGCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGAAAAC < 41bp 1 0.180560110345468 1 0.0616549551486969 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080174 chr12:7080190 nonsynonymous SNV 0.974 0 37 hm5C_associated_SNPs_41817 0 0 1 0 1 Cytosol 1 0.50023164398263 1 0.999536712034739 hm5C_site_40945 DeepMRMD:1;iRNA_m5C:0.999536712034739 40946 chr12 7080190 7080190 1 + G A UCEC 7080176 + 7080156 7080196 41 GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAA GCTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGAAAACAA < 41bp 1 0.17514771952947 1 0.0704514682292938 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080176 chr12:7080190 nonsynonymous SNV 0.974 0 35 hm5C_associated_SNPs_41818 0 0 1 0 1 Cytosol 1 0.500231643924662 1 0.999536712150676 hm5C_site_40946 DeepMRMD:1;iRNA_m5C:0.999536712150676 40947 chr12 7080190 7080190 1 + G A UCEC 7080177 + 7080157 7080197 41 CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGGAAACAAG CTCTGCCACCCAAGCGGCCCCGACTAGGGGCAGAAAACAAG < 41bp 1 0.344642898314191 1 0.121934950351715 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080177 chr12:7080190 nonsynonymous SNV 0.974 0 34 hm5C_associated_SNPs_41819 0 0 1 0 1 Cytosol 1 0.500231643920795 1 0.999536712158409 hm5C_site_40947 DeepMRMD:1;iRNA_m5C:0.999536712158409 40948 chr11 65338915 65338915 1 + G A UCEC 65338926 + 65338906 65338946 41 CTGGCCTCAGCCTCAGAGCTCCCCCTGGGCTCTCGACCTGC CTGGCCTCAACCTCAGAGCTCCCCCTGGGCTCTCGACCTGC < 41bp 1 0.23406916917221 1 0.0193994641304016 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338926 chr11:65338915 nonsynonymous SNV 0.000 0 10 hm5C_associated_SNPs_41820 0 0 0 0 1 Cytosol 1 0.500231643942838 1 0.999536712114325 hm5C_site_40948 DeepMRMD:1;iRNA_m5C:0.999536712114325 40949 chr12 21598302 21598302 1 + T G UCEC 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TCTAAAATATTGGAAGAAGTCGATGTTGAAGAACAATCAAG < 41bp 1 0.588290451551355 1 0.552077770233154 experiment 0.82341909689729 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598302 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_41821 0 0 1 0 2 Cytosol 1 0.50023164392274 0.895844459533692 0.999536712154519 hm5C_site_40949 DeepMRMD:0.895844459533692;iRNA_m5C:0.999536712154519 40950 chr19 7584368 7584368 1 + G A UCEC 7584367 + 7584347 7584387 41 CGACGCCGAAGCTCCGGGCTCGGAACCCCAAGATCCCGACC CGACGCCGAAGCTCCGGGCTCAGAACCCCAAGATCCCGACC < 41bp 1 0.635826772028065 1 0.593423306941986 experiment 0.72834645594387 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF358 ENSG00000198816 CDS Human protein_coding chr19:7584367 chr19:7584368 synonymous SNV . 0 22 hm5C_associated_SNPs_41822 0 0 1 0 0 Cytosol 1 0.500231644104656 0.813153386116028 0.999536711790688 hm5C_site_40950 DeepMRMD:0.813153386116028;iRNA_m5C:0.999536711790688 40951 chr7 34125543 34125543 1 + G A UCEC 34125549 + 34125529 34125569 41 GAATCTTGGAGGGTGGAGTCCAATGAGTTCTGCAACAGACC GAATCTTGGAGGGTAGAGTCCAATGAGTTCTGCAACAGACC < 41bp 1 0.143901827084278 1 0.13973131775856 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BMPER ENSG00000164619 CDS Human protein_coding chr7:34125549 chr7:34125543 synonymous SNV . 0 15 hm5C_associated_SNPs_41823 0 0 0 0 0 exosome 1 0.50023164399474 1 0.999536712010521 hm5C_site_40951 DeepMRMD:1;iRNA_m5C:0.999536712010521 40952 chr4 57876569 57876569 1 + C T UCEC 57876563 + 57876543 57876583 41 CTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTCT CTTTTGCGTCTACTCTTTCTCACCTGTGTCGTTTAAATTCT < 41bp 1 0.671668332550383 1 0.342612385749817 experiment 0.656663334899233 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57876563 chr4:57876569 nonsynonymous SNV 0.998 5 27 hm5C_associated_SNPs_41824 0 0 1 0 1 Nucleus 1 0.500231673970605 1 0.999536652058789 hm5C_site_40952 DeepMRMD:1;iRNA_m5C:0.999536652058789 40953 chr1 222806514 222806514 1 + G A UCEC 222806499 + 222806479 222806519 41 CTATTGATGCAAACAAGCAACCAGAGACAGCCGCCGAAGAG CTATTGATGCAAACAAGCAACCAGAGACAGCCGCCAAAGAG < 41bp 1 0.547278526531355 1 0.319833993911743 experiment 0.905442946937289 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222806499 chr1:222806514 nonsynonymous SNV 0.021 1 36 hm5C_associated_SNPs_41825 0 0 1 0 2 Endoplasmic reticulum 1 0.500231629543139 1 0.999536740913721 hm5C_site_40953 DeepMRMD:1;iRNA_m5C:0.999536740913721 40954 chr2 30756154 30756154 1 + C T UCEC 30756147 + 30756127 30756167 41 TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTCTCAAAGGT TCAGATTGGAGAAAATTTGCCTCAAAGTGAGTCTCAAAGGT < 41bp 1 0.67698440783257 1 0.596725702285767 experiment 0.646031184334861 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30756147 chr2:30756154 nonsynonymous SNV 0.983 2 28 hm5C_associated_SNPs_41826 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644035247 0.806548595428466 0.999536711929506 hm5C_site_40954 DeepMRMD:0.806548595428466;iRNA_m5C:0.999536711929506 40955 chr1 171535881 171535881 1 + G T UCEC 171535864 + 171535844 171535884 41 ACAAGAGAAACCAAGCCCAGCTACAGTCAGAAGCACAGATC ACAAGAGAAACCAAGCCCAGCTACAGTCAGAAGCACATATC < 41bp 1 0.433056289080189 1 0.411839008331299 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171535864 chr1:171535881 nonsynonymous SNV 0.998 3 38 hm5C_associated_SNPs_41827 0 0 1 0 0 Cytosol 1 0.500231643923523 1 0.999536712152954 hm5C_site_40955 DeepMRMD:1;iRNA_m5C:0.999536712152954 40956 chr1 180010817 180010817 1 + G T UCEC 180010799 + 180010779 180010819 41 AACCCCTTTTATTTAAAGGTCCATGCAGAATCATTACAGCA AACCCCTTTTATTTAAAGGTCCATGCAGAATCATTACATCA < 41bp 1 0.0161521612582193 1 0.0228069424629211 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP350 ENSG00000135837 CDS Human protein_coding chr1:180010799 chr1:180010817 nonsynonymous SNV 0.998 0 39 hm5C_associated_SNPs_41829 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40956 DeepMRMD:1;iRNA_m5C:0.999536712157815 40957 chr8 59483456 59483456 1 + C A UCEC 59483471 + 59483451 59483491 41 AACTGCTTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGT AACTGATTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGT < 41bp 1 0.440973514747204 1 0.0261452794075012 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SDCBP ENSG00000137575 CDS Human protein_coding chr8:59483471 chr8:59483456 nonsynonymous SNV 0.970 1 6 hm5C_associated_SNPs_41830 0 0 1 0 2 Ribosome 1 0.500231643423693 1 0.999536713152613 hm5C_site_40957 DeepMRMD:1;iRNA_m5C:0.999536713152613 40958 chr17 80684787 80684787 1 + G T UCEC 80684806 + 80684786 80684826 41 AGCAGAGGATTCCTCTGGGCCGGTGATTTTTGACCCAGCTT ATCAGAGGATTCCTCTGGGCCGGTGATTTTTGACCCAGCTT < 41bp 1 0.435469189773549 1 0.421065270900726 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80684806 chr17:80684787 nonsynonymous SNV 0.142 1 2 hm5C_associated_SNPs_41831 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_40958 DeepMRMD:1;iRNA_m5C:0.999536712157815 40959 chr19 39950208 39950208 1 + T C UCEC 39950216 + 39950196 39950236 41 TAGGGATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTG TAGGGATCCCAACCTGTGGACTGTCAAATGTAAGGTATGTG < 41bp 1 0.0381334908310701 1 0.0712136030197144 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950216 chr19:39950208 synonymous SNV . 0 13 hm5C_associated_SNPs_41832 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_40959 DeepMRMD:1;iRNA_m5C:0.999536712157815 40960 chr19 39950208 39950208 1 + T C UCEC 39950220 + 39950200 39950240 41 GATCCCAATCTGTGGACTGTCAAATGTAAGGTATGTGCTCT GATCCCAACCTGTGGACTGTCAAATGTAAGGTATGTGCTCT < 41bp 1 0.402495056300409 1 0.854240000247955 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39950220 chr19:39950208 synonymous SNV . 0 9 hm5C_associated_SNPs_41833 0 0 1 0 2 Nucleus 1 0.500231643921092 0.29151999950409 0.999536712157815 hm5C_site_40960 DeepMRMD:0.29151999950409;iRNA_m5C:0.999536712157815 40961 chr11 61725741 61725741 1 + C T UCEC 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGTAGTT < 41bp 1 0.188948434457832 1 0.21291309595108 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725741 stopgain 0.998 1 37 hm5C_associated_SNPs_41834 0 0 0 2 1 chromatin 1 0.500231688938584 1 0.999536622122832 hm5C_site_40961 DeepMRMD:1;iRNA_m5C:0.999536622122832 40962 chr12 53700842 53700842 1 + G A UCEC 53700859 + 53700839 53700879 41 GCGGCTTCACTGGCGGTCACCACACCCGAGAGGGTGCCTTG GCGACTTCACTGGCGGTCACCACACCCGAGAGGGTGCCTTG < 41bp 1 0.54273213586956 1 0.352064818143845 experiment 0.91453572826088 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700859 chr12:53700842 nonsynonymous SNV 0.996 4 4 hm5C_associated_SNPs_41835 0 0 1 0 1 cytosol 1 0.500231631967871 1 0.999536736064258 hm5C_site_40962 DeepMRMD:1;iRNA_m5C:0.999536736064258 40963 chr7 104717815 104717815 1 + C A UCEC 104717824 + 104717804 104717844 41 GATGCACTTATCATTGAATACAGAGGGAAGTTTATGCTGAG GATGCACTTATAATTGAATACAGAGGGAAGTTTATGCTGAG < 41bp 1 0.484216771611237 1 0.77402675151825 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2E ENSG00000005483 CDS Human protein_coding chr7:104717824 chr7:104717815 synonymous SNV . 0 12 hm5C_associated_SNPs_41836 0 0 1 0 1 Cytosol 1 0.500231643921092 0.4519464969635 0.999536712157815 hm5C_site_40963 DeepMRMD:0.4519464969635;iRNA_m5C:0.999536712157815 40964 chr3 47870579 47870579 1 + C T UCEC 47870592 + 47870572 47870612 41 AGAAGATCGATGCTGAGCGGCAGGCTGCAGCTGCAGCCTGC AGAAGATTGATGCTGAGCGGCAGGCTGCAGCTGCAGCCTGC < 41bp 1 0.476484315960374 1 0.213461637496948 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47870592 chr3:47870579 synonymous SNV . 0 8 hm5C_associated_SNPs_41837 0 0 1 0 2 Cytosol 1 0.500231682100684 1 0.999536635798631 hm5C_site_40964 DeepMRMD:1;iRNA_m5C:0.999536635798631 40965 chr3 47870579 47870579 1 + C T UCEC 47870599 + 47870579 47870619 41 CGATGCTGAGCGGCAGGCTGCAGCTGCAGCCTGCCAGCTGT TGATGCTGAGCGGCAGGCTGCAGCTGCAGCCTGCCAGCTGT < 41bp 1 0.487733350960335 1 0.108718037605286 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47870599 chr3:47870579 synonymous SNV . 0 1 hm5C_associated_SNPs_41838 0 0 1 0 2 Cytosol 1 0.497520882607982 1 1 hm5C_site_40965 DeepMRMD:1;iRNA_m5C:1 40966 chr17 37359313 37359313 1 + C T UCEC 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGTGCCGGCTGCTCAGAAGATACCGT < 41bp 1 0.469189558892455 1 0.316915154457092 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359313 nonsynonymous SNV 0.621 1 18 hm5C_associated_SNPs_41839 0 0 1 0 2 chromatin 1 0.500231643921073 1 0.999536712157854 hm5C_site_40966 DeepMRMD:1;iRNA_m5C:0.999536712157854 40967 chr17 37359313 37359313 1 + C T UCEC 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGTGCCGGCTGCTCAGAAGATACCGTGAA < 41bp 1 0.385376728878291 1 0.124901294708252 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359313 nonsynonymous SNV 0.621 1 15 hm5C_associated_SNPs_41840 0 0 1 0 2 chromatin 1 0.500231643920274 1 0.999536712159452 hm5C_site_40967 DeepMRMD:1;iRNA_m5C:0.999536712159452 40968 chr17 37359313 37359313 1 + C T UCEC 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGTGCCGGCTGCTCAGAAGATACCGTGAATCT < 41bp 1 0.446903414343794 1 0.121127992868423 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359313 nonsynonymous SNV 0.621 1 12 hm5C_associated_SNPs_41841 0 0 1 0 2 chromatin 1 0.500231643921008 1 0.999536712157984 hm5C_site_40968 DeepMRMD:1;iRNA_m5C:0.999536712157984 40969 chr17 37359313 37359313 1 + C T UCEC 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA TGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA < 41bp 1 0.227580193758306 1 0.131600618362427 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359313 nonsynonymous SNV 0.621 1 1 hm5C_associated_SNPs_41842 0 0 1 0 2 chromatin 1 0.500231644909698 1 0.999536710180604 hm5C_site_40969 DeepMRMD:1;iRNA_m5C:0.999536710180604 40970 chr9 90261455 90261455 1 + G T UCEC 90261459 + 90261439 90261479 41 ATTAAAAGAGGCTCGAGAATCGATGTCCAGGATAAGGTCAT ATTAAAAGAGGCTCGATAATCGATGTCCAGGATAAGGTCAT < 41bp 1 0.233690581311523 1 0.498921513557434 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90261459 chr9:90261455 nonsynonymous SNV 0.994 0 17 hm5C_associated_SNPs_41843 0 0 0 0 2 Ribosome 1 0.500231645456662 1 0.999536709086675 hm5C_site_40970 DeepMRMD:1;iRNA_m5C:0.999536709086675 40971 chr2 207027320 207027320 1 + G A UCEC 207027336 + 207027316 207027356 41 AGACGGCTTAGTCTGGGGCTCATGTGAGTTTAGGCTTTGCC AGACAGCTTAGTCTGGGGCTCATGTGAGTTTAGGCTTTGCC < 41bp 1 0.197602132554313 1 0.247000277042389 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 CDS Human protein_coding chr2:207027336 chr2:207027320 nonsynonymous SNV 0.980 2 5 hm5C_associated_SNPs_41844 0 0 1 0 1 chromatin 1 0.500231643922628 1 0.999536712154744 hm5C_site_40971 DeepMRMD:1;iRNA_m5C:0.999536712154744 40972 chrX 205513 205513 1 + G A UCEC 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCATGCTGAA < 41bp 1 0.4371811439156 1 0.223816156387329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205513 nonsynonymous SNV 0.013 2 34 hm5C_associated_SNPs_41845 0 0 1 0 1 Cytosol 1 0.500231643552099 1 0.999536712895802 hm5C_site_40972 DeepMRMD:1;iRNA_m5C:0.999536712895802 40973 chr14 94512182 94512182 1 + G A UCEC 94512166 + 94512146 94512186 41 TACGTGGACGAGATGGATACCGCCCTGAACCACCACGTGTT TACGTGGACGAGATGGATACCGCCCTGAACCACCACATGTT < 41bp 1 0.474397232286612 1 0.272655367851257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUB2 ENSG00000089723 CDS Human protein_coding chr14:94512166 chr14:94512182 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_41846 0 0 0 0 0 exosome 1 0.500231640448007 1 0.999536719103987 hm5C_site_40973 DeepMRMD:1;iRNA_m5C:0.999536719103987 40974 chr19 42862334 42862334 1 + G A UCEC 42862330 + 42862310 42862350 41 TCTGCTGTCTACCACGAGGCCACCGACTCCCTCTACGTGTT TCTGCTGTCTACCACGAGGCCACCAACTCCCTCTACGTGTT < 41bp 1 0.363078046930035 1 0.144114255905151 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42862330 chr19:42862334 nonsynonymous SNV 0.948 3 25 hm5C_associated_SNPs_41847 0 0 0 0 1 Endoplasmic reticulum 1 0.500285273238111 1 0.999429453523779 hm5C_site_40974 DeepMRMD:1;iRNA_m5C:0.999429453523779 40975 chr19 42862334 42862334 1 + G A UCEC 42862340 + 42862320 42862360 41 ACCACGAGGCCACCGACTCCCTCTACGTGTTTGGGGGGTTC ACCACGAGGCCACCAACTCCCTCTACGTGTTTGGGGGGTTC < 41bp 1 0.33953252743616 1 0.261841416358948 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42862340 chr19:42862334 nonsynonymous SNV 0.948 3 15 hm5C_associated_SNPs_41848 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_40975 DeepMRMD:1;iRNA_m5C:0.999536712157815 40976 chr8 22064999 22064999 1 + C T UCEC 22065011 + 22064991 22065031 41 CGGTCCAGCGAAAGGGCTTCCAGGCCTCCCACGCCACAGGT CGGTCCAGTGAAAGGGCTTCCAGGCCTCCCACGCCACAGGT < 41bp 1 0.556382538876172 1 0.804307341575623 experiment 0.887234922247657 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22065011 chr8:22064999 stopgain 0.829 0 9 hm5C_associated_SNPs_41849 0 0 0 0 1 Endoplasmic reticulum 1 0.500231653825208 0.391385316848754 0.999536692349583 hm5C_site_40976 DeepMRMD:0.391385316848754;iRNA_m5C:0.999536692349583 40977 chr19 11152184 11152184 1 + C A UCEC 11152165 + 11152145 11152185 41 CGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCT CGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACAT < 41bp 1 0.393138256583337 1 0.283856064081192 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11152165 chr19:11152184 nonsynonymous SNV 0.995 2 40 hm5C_associated_SNPs_41850 0 0 1 0 1 Nucleus 1 0.500231644391912 1 0.999536711216177 hm5C_site_40977 DeepMRMD:1;iRNA_m5C:0.999536711216177 40978 chr19 11152184 11152184 1 + C A UCEC 11152168 + 11152148 11152188 41 CCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCTCAC CCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACATCAC < 41bp 1 0.14388339667739 1 0.093771904706955 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11152168 chr19:11152184 nonsynonymous SNV 0.995 2 37 hm5C_associated_SNPs_41851 0 0 1 0 1 Nucleus 1 0.50023164392111 1 0.99953671215778 hm5C_site_40978 DeepMRMD:1;iRNA_m5C:0.99953671215778 40979 chr10 122664256 122664256 1 + G A UCEC 122664258 + 122664238 122664278 41 AGTCACTACTGTCACCTCGTCAGGCCCCTCTCAGAGCACCA AGTCACTACTGTCACCTCATCAGGCCCCTCTCAGAGCACCA < 41bp 1 0.388185058963779 1 0.837097764015198 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664258 chr10:122664256 synonymous SNV . 0 19 hm5C_associated_SNPs_41852 0 0 1 0 2 Nucleus 1 0.500231673949989 0.325804471969604 0.999536652100022 hm5C_site_40979 DeepMRMD:0.325804471969604;iRNA_m5C:0.999536652100022 40980 chr7 73922430 73922430 1 + G A UCEC 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGCACTGTGACGTCCCCACCAACGGCTGCGGACC < 41bp 1 0.546911107091352 1 0.198889404535294 experiment 0.906177785817296 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922430 nonsynonymous SNV 0.998 0 11 hm5C_associated_SNPs_41853 0 0 1 0 1 Nucleus 1 0.500381330397019 1 0.999237339205963 hm5C_site_40980 DeepMRMD:1;iRNA_m5C:0.999237339205963 40981 chr9 100234752 100234752 1 + A C UCEC 100234769 + 100234749 100234789 41 GTGACAAGTCACTAGAGGTTCACCTGCAGGTACCACTGTGA GTGCCAAGTCACTAGAGGTTCACCTGCAGGTACCACTGTGA < 41bp 1 0.400577213911434 1 0.0459957122802734 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TDRD7 ENSG00000196116 CDS Human protein_coding chr9:100234769 chr9:100234752 nonsynonymous SNV 0.995 4 4 hm5C_associated_SNPs_41854 0 0 0 0 1 Ribosome 1 0.500230499371228 1 0.999539001257544 hm5C_site_40981 DeepMRMD:1;iRNA_m5C:0.999539001257544 40982 chr9 129641693 129641693 1 + G A UCEC 129641712 + 129641692 129641732 41 TGGACAGCAGCAGTTTTATTCAGTTTGATGTGCCCGAGTAC TAGACAGCAGCAGTTTTATTCAGTTTGATGTGCCCGAGTAC < 41bp 1 0.338856219393887 1 0.800294995307922 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB34 ENSG00000177125 CDS Human protein_coding chr9:129641712 chr9:129641693 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_41856 0 0 0 0 0 nucleoplasm 1 0.500231645534404 0.399410009384156 0.999536708931193 hm5C_site_40982 DeepMRMD:0.399410009384156;iRNA_m5C:0.999536708931193 40983 chr20 35128904 35128904 1 + G A UCEC 35128888 + 35128868 35128908 41 GCTCCCCAGCAGAGCCGGCACAGCCAGGGGCCTGCCGCCGA GCTCCCCAGCAGAGCCGGCACAGCCAGGGGCCTGCCACCGA < 41bp 1 0.431035275035597 1 0.0685310065746307 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DLGAP4 ENSG00000080845 CDS Human protein_coding chr20:35128888 chr20:35128904 nonsynonymous SNV 0.988 1 37 hm5C_associated_SNPs_41857 0 0 0 0 0 Cytosol 1 0.500231643921098 1 0.999536712157803 hm5C_site_40983 DeepMRMD:1;iRNA_m5C:0.999536712157803 40984 chr18 19371502 19371502 1 + C T UCEC 19371516 + 19371496 19371536 41 AATGGGCTGAAGCGATGCTTCCAGTAAGTATGTTTAGAATA AATGGGTTGAAGCGATGCTTCCAGTAAGTATGTTTAGAATA < 41bp 1 0.209190564093232 1 0.0596825182437897 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MIB1 ENSG00000101752 CDS Human protein_coding chr18:19371516 chr18:19371502 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_41858 0 0 1 0 1 Nucleus 1 0.50023836290748 1 0.99952327418504 hm5C_site_40984 DeepMRMD:1;iRNA_m5C:0.99952327418504 40985 chr19 45805736 45805736 1 + C A UCEC 45805754 + 45805734 45805774 41 AGCTCTGCGCCAGGCCACAGCAGCCGCCCGCTGCCGCTGCC AGATCTGCGCCAGGCCACAGCAGCCGCCCGCTGCCGCTGCC < 41bp 1 0.587891452546032 1 0.754181146621704 experiment 0.824217094907936 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45805754 chr19:45805736 nonsynonymous SNV 0.995 2 3 hm5C_associated_SNPs_41859 0 0 0 0 0 Nucleus 1 0.500231643930597 0.491637706756592 0.999536712138807 hm5C_site_40985 DeepMRMD:0.491637706756592;iRNA_m5C:0.999536712138807 40986 chr1 222806495 222806495 1 + G A UCEC 222806499 + 222806479 222806519 41 CTATTGATGCAAACAAGCAACCAGAGACAGCCGCCGAAGAG CTATTGATGCAAACAAACAACCAGAGACAGCCGCCGAAGAG < 41bp 1 0.611251349156872 1 0.324140906333923 experiment 0.777497301686256 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIA3 ENSG00000154305 CDS Human protein_coding chr1:222806499 chr1:222806495 synonymous SNV . 0 17 hm5C_associated_SNPs_41860 0 0 1 0 2 Endoplasmic reticulum 1 0.500231458160671 1 0.999537083678657 hm5C_site_40986 DeepMRMD:1;iRNA_m5C:0.999537083678657 40987 chr22 21288070 21288070 1 + T G UCEC 21288090 + 21288070 21288110 41 TCCAAGCCCACCAATGGGATCTGTCTCAGCACCCAACCTGC GCCAAGCCCACCAATGGGATCTGTCTCAGCACCCAACCTGC < 41bp 1 0.111047326395426 1 0.157166332006454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRKL ENSG00000099942 CDS Human protein_coding chr22:21288090 chr22:21288070 stopgain 0.996 1 1 hm5C_associated_SNPs_41861 0 0 1 0 1 Nucleus 1 0.500231621393304 1 0.999536757213392 hm5C_site_40987 DeepMRMD:1;iRNA_m5C:0.999536757213392 40988 chr2 46985765 46985765 1 + G A UCEC 46985774 + 46985754 46985794 41 AATGTGGACATGAACTCCAACAGATGTTTGTCTGTCAAAGA AATGTGGACATAAACTCCAACAGATGTTTGTCTGTCAAAGA < 41bp 1 0.367094268744638 1 0.325285017490387 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SOCS5 ENSG00000171150 CDS Human protein_coding chr2:46985774 chr2:46985765 nonsynonymous SNV 0.996 0 12 hm5C_associated_SNPs_41863 0 0 1 0 0 Cytosol 1 0.500231658718486 1 0.999536682563028 hm5C_site_40988 DeepMRMD:1;iRNA_m5C:0.999536682563028 40989 chr9 131010985 131010985 1 + G A UCEC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCATGAGGGACCTCATGCCCAAGACCATCATG < 41bp 1 0.34335571719787 1 0.0726199746131897 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131010985 nonsynonymous SNV 0.927 2 12 hm5C_associated_SNPs_41864 0 0 1 0 1 Endoplasmic reticulum 1 0.500231641768852 1 0.999536716462297 hm5C_site_40989 DeepMRMD:1;iRNA_m5C:0.999536716462297 40990 chr14 21544750 21544750 1 + G A UCEC 21544752 + 21544732 21544772 41 ATCCTCCCCTTGTTCAGCGGCTGCTGATTCTCATTCATGAT ATCCTCCCCTTGTTCAGCAGCTGCTGATTCTCATTCATGAT < 41bp 1 0.176969835430972 1 0.137535125017166 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544752 chr14:21544750 nonsynonymous SNV 0.703 0 19 hm5C_associated_SNPs_41865 0 0 1 0 3 Cytosol 1 0.500231643863273 1 0.999536712273454 hm5C_site_40990 DeepMRMD:1;iRNA_m5C:0.999536712273454 40991 chr7 6641740 6641740 1 + A C UCEC 6641737 + 6641717 6641757 41 TCTCCTTAATTGCAGATGACCTGAGAACCTTGTGCTCCAGG TCTCCTTAATTGCAGATGACCTGCGAACCTTGTGCTCCAGG < 41bp 1 0.36428716663859 1 0.36930125951767 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6641737 chr7:6641740 synonymous SNV . 0 24 hm5C_associated_SNPs_41867 0 0 0 0 2 chromatin 1 0.500231653656058 1 0.999536692687884 hm5C_site_40991 DeepMRMD:1;iRNA_m5C:0.999536692687884 40992 chr10 5494333 5494333 1 + C T UCEC 5494328 + 5494308 5494348 41 TTTCTTTTTTAAGTCATTTACCCTTCGTGGTGACCACAGAT TTTCTTTTTTAAGTCATTTACCCTTTGTGGTGACCACAGAT < 41bp 1 0.102831737082263 1 0.0805096626281738 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NET1 ENSG00000173848 CDS Human protein_coding chr10:5494328 chr10:5494333 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_41868 0 0 1 0 1 Cytosol 1 0.50023164392346 1 0.999536712153079 hm5C_site_40992 DeepMRMD:1;iRNA_m5C:0.999536712153079 40993 chr11 110333106 110333106 1 + A G UCEC 110333093 + 110333073 110333113 41 TACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATC TACAGATCACGGTTGGGCTGCCAAATCTGTTTGGCAAAATC < 41bp 1 0.203424711963849 1 0.110003530979156 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333093 chr11:110333106 nonsynonymous SNV 0.994 2 34 hm5C_associated_SNPs_41869 0 0 1 0 1 Cytosol 1 0.500231730507391 1 0.999536538985219 hm5C_site_40993 DeepMRMD:1;iRNA_m5C:0.999536538985219 40994 chr11 110333106 110333106 1 + A G UCEC 110333094 + 110333074 110333114 41 ACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATCT ACAGATCACGGTTGGGCTGCCAAATCTGTTTGGCAAAATCT < 41bp 1 0.23071738285586 1 0.476891338825226 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333094 chr11:110333106 nonsynonymous SNV 0.994 2 33 hm5C_associated_SNPs_41870 0 0 1 0 1 Cytosol 1 0.500231643920092 1 0.999536712159816 hm5C_site_40994 DeepMRMD:1;iRNA_m5C:0.999536712159816 40995 chr5 110097171 110097171 1 + G T UCEC 110097160 + 110097140 110097180 41 TGTGCAGAGTATGTTGGATGCTTATTTTCCAGAACTTATTG TGTGCAGAGTATGTTGGATGCTTATTTTCCATAACTTATTG < 41bp 1 0.319222584870229 1 0.0678516328334808 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLC25A46 ENSG00000164209 CDS Human protein_coding chr5:110097160 chr5:110097171 stopgain 1.000 1 32 hm5C_associated_SNPs_41871 0 0 1 0 0 Cytosol 1 0.500231651245974 1 0.999536697508052 hm5C_site_40995 DeepMRMD:1;iRNA_m5C:0.999536697508052 40996 chr17 77755508 77755508 1 + G T UCEC 77755519 + 77755499 77755539 41 CATGAGAAGGAGGTGCAGAACCGGAAGAGAGGCAAGAGGCC CATGAGAAGTAGGTGCAGAACCGGAAGAGAGGCAAGAGGCC < 41bp 1 0.692417629690328 1 0.557493805885315 experiment 0.615164740619345 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755519 chr17:77755508 stopgain 1.000 1 10 hm5C_associated_SNPs_41872 0 0 1 0 2 chromatin 1 0.500231644022535 0.88501238822937 0.999536711954929 hm5C_site_40996 DeepMRMD:0.88501238822937;iRNA_m5C:0.999536711954929 40997 chrX 41198294 41198294 1 + C T UCEC 41198304 + 41198284 41198324 41 TTTAGAAGGGCGCTATATTCCTCCTCATTTAAGGAACCGAG TTTAGAAGGGTGCTATATTCCTCCTCATTTAAGGAACCGAG < 41bp 1 0.34119354639218 1 0.384774208068848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41198304 chrX:41198294 nonsynonymous SNV 0.997 3 11 hm5C_associated_SNPs_41873 0 0 1 0 2 Nucleus 1 0.500231643921338 1 0.999536712157323 hm5C_site_40997 DeepMRMD:1;iRNA_m5C:0.999536712157323 40998 chr11 111594833 111594833 1 + G A UCEC 111594827 + 111594807 111594847 41 TAGACGCTGTGGATCCACAACACAACGGGTATGTCCTGGTG TAGACGCTGTGGATCCACAACACAACAGGTATGTCCTGGTG < 41bp 1 0.4655451176439 1 0.308777749538422 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SIK2 ENSG00000170145 CDS Human protein_coding chr11:111594827 chr11:111594833 nonsynonymous SNV 0.946 5 27 hm5C_associated_SNPs_41874 0 0 0 0 0 Cytosol 1 0.500231643921097 1 0.999536712157807 hm5C_site_40998 DeepMRMD:1;iRNA_m5C:0.999536712157807 40999 chr4 48384654 48384654 1 + G A UCEC 48384660 + 48384640 48384680 41 CAATTCTACAAGACGGGGTACTTTTAGTGATCAGGAACTTG CAATTCTACAAGACAGGGTACTTTTAGTGATCAGGAACTTG < 41bp 1 0.0230725395764447 1 0.0111980736255646 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48384660 chr4:48384654 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_41875 0 0 1 0 1 Cytosol 1 0.500231643921059 1 0.999536712157882 hm5C_site_40999 DeepMRMD:1;iRNA_m5C:0.999536712157882 41000 chr5 72798848 72798848 1 + G T UCEC 72798844 + 72798824 72798864 41 CATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC CATTACAGGCCATGCTGAGACAAATCAGCTGACAGAAATGC < 41bp 1 0.427867288901207 1 0.288900196552277 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798844 chr5:72798848 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_41876 0 0 1 0 1 Ribosome 1 0.500231642970462 1 0.999536714059077 hm5C_site_41000 DeepMRMD:1;iRNA_m5C:0.999536714059077 41001 chr12 105558483 105558483 1 + C T UCEC 105558486 + 105558466 105558506 41 CAGAGCAGACAAGACTGCGGCTGAAGAAAACCAAGAAAAGA CAGAGCAGACAAGACTGTGGCTGAAGAAAACCAAGAAAAGA < 41bp 1 0.568465043377463 1 0.419167011976242 experiment 0.863069913245074 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105558486 chr12:105558483 nonsynonymous SNV 0.994 3 18 hm5C_associated_SNPs_41877 0 0 0 0 2 unknown 1 0.50032485549591 1 0.99935028900818 hm5C_site_41001 DeepMRMD:1;iRNA_m5C:0.99935028900818 41002 chr12 100732658 100732658 1 + G A UCEC 100732661 + 100732641 100732681 41 AAAGCAGACCCAACAAAGACCCACAGATATGTCTGCCCTTA AAAGCAGACCCAACAAAAACCCACAGATATGTCTGCCCTTA < 41bp 1 0.624774785431534 1 0.114204108715057 experiment 0.750450429136932 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732661 chr12:100732658 nonsynonymous SNV 0.949 1 18 hm5C_associated_SNPs_41878 0 0 1 0 0 chromatin 1 0.500231643921168 1 0.999536712157664 hm5C_site_41002 DeepMRMD:1;iRNA_m5C:0.999536712157664 41003 chr12 100732658 100732658 1 + G A UCEC 100732662 + 100732642 100732682 41 AAGCAGACCCAACAAAGACCCACAGATATGTCTGCCCTTAA AAGCAGACCCAACAAAAACCCACAGATATGTCTGCCCTTAA < 41bp 1 0.639461536586096 1 0.143803089857101 experiment 0.721076926827809 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732662 chr12:100732658 nonsynonymous SNV 0.949 1 17 hm5C_associated_SNPs_41879 0 0 1 0 0 chromatin 1 0.500231643428977 1 0.999536713142046 hm5C_site_41003 DeepMRMD:1;iRNA_m5C:0.999536713142046 41004 chr12 100732658 100732658 1 + G A UCEC 100732664 + 100732644 100732684 41 GCAGACCCAACAAAGACCCACAGATATGTCTGCCCTTAATA GCAGACCCAACAAAAACCCACAGATATGTCTGCCCTTAATA < 41bp 1 0.267808507497741 1 0.476432532072067 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732664 chr12:100732658 nonsynonymous SNV 0.949 1 15 hm5C_associated_SNPs_41880 0 0 1 0 0 chromatin 1 0.500231779742897 1 0.999536440514205 hm5C_site_41004 DeepMRMD:1;iRNA_m5C:0.999536440514205 41005 chr12 100732658 100732658 1 + G A UCEC 100732676 + 100732656 100732696 41 AAGACCCACAGATATGTCTGCCCTTAATAATCTCTTTGGCC AAAACCCACAGATATGTCTGCCCTTAATAATCTCTTTGGCC < 41bp 1 0.052356037331439 1 0.0589154064655304 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732676 chr12:100732658 nonsynonymous SNV 0.949 1 3 hm5C_associated_SNPs_41881 0 0 1 0 0 chromatin 1 0.500231643922775 1 0.999536712154451 hm5C_site_41005 DeepMRMD:1;iRNA_m5C:0.999536712154451 41006 chr15 91456113 91456113 1 + G A UCEC 91456118 + 91456098 91456138 41 TTTCTCTAGCCCTACGTCCCCAAGGAGCCCCCCGTGCTGCG TTTCTCTAGCCCTACATCCCCAAGGAGCCCCCCGTGCTGCG < 41bp 1 0.636344269979595 1 0.89609694480896 experiment 0.727311460040809 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91456118 chr15:91456113 nonsynonymous SNV 0.447 0 16 hm5C_associated_SNPs_41882 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 0.20780611038208 0.999536712157815 hm5C_site_41006 DeepMRMD:0.20780611038208;iRNA_m5C:0.999536712157815 41007 chr7 70252211 70252211 1 + C T UCEC 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTTGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA < 41bp 1 0.145109458039715 1 0.0629980266094208 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252211 synonymous SNV . 0 4 hm5C_associated_SNPs_41883 0 0 1 0 1 Nucleus 1 0.500231643921036 1 0.999536712157927 hm5C_site_41007 DeepMRMD:1;iRNA_m5C:0.999536712157927 41008 chr15 41192202 41192202 1 + C T UCEC 41192201 + 41192181 41192221 41 TACCACGTGCAACGGGAGGCCCGAGATGTCTGGCGCACCTA TACCACGTGCAACGGGAGGCCTGAGATGTCTGGCGCACCTA < 41bp 1 0.587187294399668 1 0.356966882944107 experiment 0.825625411200664 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192201 chr15:41192202 stopgain 0.996 1 22 hm5C_associated_SNPs_41884 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41008 DeepMRMD:1;iRNA_m5C:0.999536712157815 41009 chr14 102466691 102466691 1 + C T UCEC 102466707 + 102466687 102466727 41 AAATCGATCAGATGAAGGAGCAACCCTGGGTTTCAGTACAG AAATTGATCAGATGAAGGAGCAACCCTGGGTTTCAGTACAG < 41bp 1 0.0418911451348553 1 0.197573095560074 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102466707 chr14:102466691 synonymous SNV . 0 5 hm5C_associated_SNPs_41885 0 0 1 0 2 Cytosol 1 0.500231643921069 1 0.999536712157861 hm5C_site_41009 DeepMRMD:1;iRNA_m5C:0.999536712157861 41010 chr2 54871555 54871555 1 + C A UCEC 54871546 + 54871526 54871566 41 TTACATAAAATGTGGGAAGTCCTTGAATCCACTACCCAGAC TTACATAAAATGTGGGAAGTCCTTGAATCAACTACCCAGAC < 41bp 1 0.0402154660983994 1 0.0925605893135071 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54871546 chr2:54871555 synonymous SNV . 0 30 hm5C_associated_SNPs_41886 0 0 1 0 1 Nucleus 1 0.500231671621961 1 0.999536656756077 hm5C_site_41010 DeepMRMD:1;iRNA_m5C:0.999536656756077 41011 chr1 38171217 38171217 1 + C T UCEC 38171209 + 38171189 38171229 41 CTTGCTGACAGCAAAGAGATCTTCCTCACTGTGCCAGTGGG CTTGCTGACAGCAAAGAGATCTTCCTCATTGTGCCAGTGGG < 41bp 1 0.120725146854965 1 0.0468387305736542 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CDCA8 ENSG00000134690 CDS Human protein_coding chr1:38171209 chr1:38171217 nonsynonymous SNV 0.931 2 29 hm5C_associated_SNPs_41887 0 0 1 0 0 Ribosome 1 0.500231643924053 1 0.999536712151895 hm5C_site_41011 DeepMRMD:1;iRNA_m5C:0.999536712151895 41012 chr16 28843545 28843545 1 + G A UCEC 28843531 + 28843511 28843551 41 CCCCTTTTCTTCCAGTGGGCCGGATGTATCCCCCGCGTTCT CCCCTTTTCTTCCAGTGGGCCGGATGTATCCCCCACGTTCT < 41bp 1 0.327829988005079 1 0.447473585605621 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28843531 chr16:28843545 synonymous SNV . 0 35 hm5C_associated_SNPs_41888 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_41012 DeepMRMD:1;iRNA_m5C:0.999536712157815 41013 chr3 157841677 157841677 1 + A C UCEC 157841658 + 157841638 157841678 41 ATTATATTTTATTTCAGACGCAGGCATCGATCAAGCAGTAG ATTATATTTTATTTCAGACGCAGGCATCGATCAAGCAGTCG < 41bp 1 0.33874370153041 1 0.116480052471161 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841658 chr3:157841677 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_41889 0 0 1 0 1 Ribosome 1 0.500231661961809 1 0.999536676076382 hm5C_site_41013 DeepMRMD:1;iRNA_m5C:0.999536676076382 41014 chr3 157841677 157841677 1 + A C UCEC 157841665 + 157841645 157841685 41 TTTATTTCAGACGCAGGCATCGATCAAGCAGTAGCTCTTCT TTTATTTCAGACGCAGGCATCGATCAAGCAGTCGCTCTTCT < 41bp 1 0.11826560267626 1 0.14891904592514 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841665 chr3:157841677 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_41890 0 0 1 0 1 Ribosome 1 0.500231643904877 1 0.999536712190247 hm5C_site_41014 DeepMRMD:1;iRNA_m5C:0.999536712190247 41015 chr14 100367285 100367285 1 + G A UCEC 100367289 + 100367269 100367309 41 TTGCCCCCACATGTGCGCATCTGGGATTCTGTGACATTGAA TTGCCCCCACATGTGCACATCTGGGATTCTGTGACATTGAA < 41bp 1 0.54157262930177 1 0.16809007525444 experiment 0.916854741396461 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367289 chr14:100367285 nonsynonymous SNV 1.000 3 17 hm5C_associated_SNPs_41891 0 0 0 0 2 Nucleus 1 0.500235007983577 1 0.999529984032846 hm5C_site_41015 DeepMRMD:1;iRNA_m5C:0.999529984032846 41016 chr16 24835052 24835052 1 + G A UCEC 24835032 + 24835012 24835052 41 TCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCG TCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCA < 41bp 1 0.690416327471563 1 0.367930948734283 experiment 0.619167345056874 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835032 chr16:24835052 nonsynonymous SNV 0.999 3 41 hm5C_associated_SNPs_41892 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41016 DeepMRMD:1;iRNA_m5C:0.999536712157815 41017 chr16 24835052 24835052 1 + G A UCEC 24835033 + 24835013 24835053 41 CCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCGA CCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCAA < 41bp 1 0.251329441398152 1 0.307909667491913 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835033 chr16:24835052 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_41893 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41017 DeepMRMD:1;iRNA_m5C:0.999536712157815 41018 chr16 24835052 24835052 1 + G A UCEC 24835034 + 24835014 24835054 41 CACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCGAG CACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCAAG < 41bp 1 0.470001695222268 1 0.407500714063644 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24835034 chr16:24835052 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_41894 0 0 1 0 0 Nucleus 1 0.500231643921103 1 0.999536712157795 hm5C_site_41018 DeepMRMD:1;iRNA_m5C:0.999536712157795 41019 chr4 144460050 144460050 1 + T C UCEC 144460033 + 144460013 144460053 41 TGGCATCAATCTTGCGACTGCTGATGTAGTAATTTTGTATG TGGCATCAATCTTGCGACTGCTGATGTAGTAATTTTGCATG < 41bp 1 0.318138945913889 1 0.264405131340027 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144460033 chr4:144460050 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_41895 0 0 1 0 1 Nucleus 1 0.50027853612994 1 0.999442927740119 hm5C_site_41019 DeepMRMD:1;iRNA_m5C:0.999442927740119 41020 chr2 64118268 64118268 1 + C A UCEC 64118258 + 64118238 64118278 41 TTTCCCTGTCACTTAGGGAACGGTTATCATCATTGCAAATC TTTCCCTGTCACTTAGGGAACGGTTATCATAATTGCAAATC < 41bp 1 0.339405532533664 1 0.0689093768596649 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UGP2 ENSG00000169764 CDS Human protein_coding chr2:64118258 chr2:64118268 synonymous SNV . 0 31 hm5C_associated_SNPs_41896 0 0 0 0 1 Ribosome 1 0.500231643722765 1 0.999536712554471 hm5C_site_41020 DeepMRMD:1;iRNA_m5C:0.999536712554471 41021 chr14 21462706 21462706 1 + T C UCEC 21462722 + 21462702 21462742 41 GTGGTTCAGAATCTGGGGAGCCTTATATTCCAGGTGTCTTT GTGGCTCAGAATCTGGGGAGCCTTATATTCCAGGTGTCTTT < 41bp 1 0.0833533525681871 1 0.0114620923995972 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21462722 chr14:21462706 synonymous SNV . 0 5 hm5C_associated_SNPs_41897 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41021 DeepMRMD:1;iRNA_m5C:0.999536712157815 41022 chr17 38142915 38142915 1 + C A UCEC 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCCTATATCCAACTCCTCGTGGTCATCTTCATGATGAA < 41bp 1 0.344064504087138 1 0.175295025110245 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142915 nonsynonymous SNV 0.900 2 10 hm5C_associated_SNPs_41898 0 0 1 0 2 Ribosome 1 0.500231643921101 1 0.999536712157798 hm5C_site_41022 DeepMRMD:1;iRNA_m5C:0.999536712157798 41023 chr1 16261826 16261826 1 + C G UCEC 16261811 + 16261791 16261831 41 CAAAGCTAGATGCTCATTCTCCTCGACCAAGTGGACCCGGG CAAAGCTAGATGCTCATTCTCCTCGACCAAGTGGAGCCGGG < 41bp 1 0.0869879549104906 1 0.104220479726791 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16261811 chr1:16261826 nonsynonymous SNV 0.004 1 36 hm5C_associated_SNPs_41899 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164436552 1 0.999536711268959 hm5C_site_41023 DeepMRMD:1;iRNA_m5C:0.999536711268959 41024 chr14 55609354 55609354 1 + C T UCEC 55609359 + 55609339 55609379 41 TTCCACTTTAACCCACGCTTCAATGAGAACAACAGGAGAGT TTCCACTTTAACCCATGCTTCAATGAGAACAACAGGAGAGT < 41bp 1 0.151863109949508 1 0.0705975592136383 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LGALS3 ENSG00000131981 CDS Human protein_coding chr14:55609359 chr14:55609354 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_41900 0 0 0 0 1 Ribosome 1 0.500231645020933 1 0.999536709958135 hm5C_site_41024 DeepMRMD:1;iRNA_m5C:0.999536709958135 41025 chr17 33900713 33900713 1 + G A UCEC 33900704 + 33900684 33900724 41 ATGAGTGAAGTAGAGCCTGACCTGGTATTGCCATTGCTTCA ATGAGTGAAGTAGAGCCTGACCTGGTATTACCATTGCTTCA < 41bp 1 0.267219021723 1 0.0526687502861023 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD7 ENSG00000207297 ncRNA_exonic Human snoRNA chr17:33900704 chr17:33900713 . . 0 30 hm5C_associated_SNPs_41901 0 0 1 0 0 unknown 1 0.500231643923239 1 0.999536712153521 hm5C_site_41025 DeepMRMD:1;iRNA_m5C:0.999536712153521 41026 chr17 33900713 33900713 1 + G A UCEC 33900715 + 33900695 33900735 41 AGAGCCTGACCTGGTATTGCCATTGCTTCACTGTTGGCTTT AGAGCCTGACCTGGTATTACCATTGCTTCACTGTTGGCTTT < 41bp 1 0.280468375428436 1 0.192359417676926 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD7 ENSG00000207297 ncRNA_exonic Human snoRNA chr17:33900715 chr17:33900713 . . 0 19 hm5C_associated_SNPs_41903 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_41026 DeepMRMD:1;iRNA_m5C:0.999536712157815 41027 chr17 33900713 33900713 1 + G A UCEC 33900725 + 33900705 33900745 41 CTGGTATTGCCATTGCTTCACTGTTGGCTTTGACCAGGGTA CTGGTATTACCATTGCTTCACTGTTGGCTTTGACCAGGGTA < 41bp 1 0.30552640776388 1 0.136425971984863 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD7 ENSG00000207297 ncRNA_exonic Human snoRNA chr17:33900725 chr17:33900713 . . 0 9 hm5C_associated_SNPs_41904 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_41027 DeepMRMD:1;iRNA_m5C:0.999536712157815 41028 chr19 41120229 41120229 1 + G A UCEC 41120209 + 41120189 41120229 41 CCCACATCCGACCACCCGACCTCTCTCCTCAGACGTGGACG CCCACATCCGACCACCCGACCTCTCTCCTCAGACGTGGACA < 41bp 1 0.0264208167127126 1 0.0144018530845642 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41120209 chr19:41120229 nonsynonymous SNV 0.997 4 41 hm5C_associated_SNPs_41905 0 0 1 0 1 Cytosol 1 0.500231641851695 1 0.99953671629661 hm5C_site_41028 DeepMRMD:1;iRNA_m5C:0.99953671629661 41029 chr12 101680180 101680180 1 + C T UCEC 101680176 + 101680156 101680196 41 GTTTTTTTTGACTATCACCTCGATCCTGGAGACTCAGGACA GTTTTTTTTGACTATCACCTCGATTCTGGAGACTCAGGACA < 41bp 1 0.121966178517278 1 0.0629355907440186 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101680176 chr12:101680180 synonymous SNV . 0 25 hm5C_associated_SNPs_41906 0 0 1 0 1 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_41029 DeepMRMD:1;iRNA_m5C:0.999536712157818 41030 chr5 72798827 72798827 1 + T C UCEC 72798844 + 72798824 72798864 41 CATTACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC CATCACAGGCCATGCTGAGACAAAGCAGCTGACAGAAATGC < 41bp 1 0.605191179047287 1 0.348757266998291 experiment 0.789617641905426 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTF3 ENSG00000145741 CDS Human protein_coding chr5:72798844 chr5:72798827 synonymous SNV . 0 4 hm5C_associated_SNPs_41907 0 0 1 0 1 Ribosome 1 0.500231645761962 1 0.999536708476076 hm5C_site_41030 DeepMRMD:1;iRNA_m5C:0.999536708476076 41031 chr1 182827323 182827323 1 + T C UCEC 182827338 + 182827318 182827358 41 CCATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA CCATCCTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA < 41bp 1 0.199106612494248 1 0.135673761367798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827338 chr1:182827323 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_41908 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_41031 DeepMRMD:1;iRNA_m5C:0.999536712157816 41032 chr1 109325272 109325272 1 + G A UCEC 109325284 + 109325264 109325304 41 TTGACAGGGAAATTCCCAAGCTTATGAAAGAAATTTCATCA TTGACAGGAAAATTCCCAAGCTTATGAAAGAAATTTCATCA < 41bp 1 0.157304414754699 1 0.0607879459857941 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109325284 chr1:109325272 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_41910 0 0 1 0 2 Nucleus 1 0.500231643921091 1 0.999536712157817 hm5C_site_41032 DeepMRMD:1;iRNA_m5C:0.999536712157817 41033 chr8 17819583 17819583 1 + A G UCEC 17819570 + 17819550 17819590 41 CTGCTAGTGTGGGTAACTGTCCCACCAAAAAATATATGCCA CTGCTAGTGTGGGTAACTGTCCCACCAAAAAATGTATGCCA < 41bp 1 0.178223168228957 1 0.353214472532272 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PCM1 ENSG00000078674 CDS Human protein_coding chr8:17819570 chr8:17819583 nonsynonymous SNV 0.984 1 34 hm5C_associated_SNPs_41911 0 0 1 0 1 Nucleus 1 0.500231643921322 1 0.999536712157357 hm5C_site_41033 DeepMRMD:1;iRNA_m5C:0.999536712157357 41034 chr8 17819583 17819583 1 + A G UCEC 17819571 + 17819551 17819591 41 TGCTAGTGTGGGTAACTGTCCCACCAAAAAATATATGCCAG TGCTAGTGTGGGTAACTGTCCCACCAAAAAATGTATGCCAG < 41bp 1 0.145836119138972 1 0.461863994598389 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17819571 chr8:17819583 nonsynonymous SNV 0.984 1 33 hm5C_associated_SNPs_41912 0 0 1 0 1 Nucleus 1 0.500231643840521 1 0.999536712318958 hm5C_site_41034 DeepMRMD:1;iRNA_m5C:0.999536712318958 41035 chr19 38780811 38780811 1 + C A UCEC 38780801 + 38780781 38780821 41 CACTGGGCCTTGCCGTGCATCCTTCCCACGCTGGTACTTTG CACTGGGCCTTGCCGTGCATCCTTCCCACGATGGTACTTTG < 41bp 1 0.0150268132953442 1 0.074692964553833 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPINT2 ENSG00000167642;ENSG00000267748 CDS Human other chr19:38780801 chr19:38780811 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_41913 0 0 1 0 1 Ribosome 1 0.500230337510097 1 0.999539324979805 hm5C_site_41035 DeepMRMD:1;iRNA_m5C:0.999539324979805 41036 chr6 7578032 7578032 1 + C T UCEC 7578027 + 7578007 7578047 41 TGCAGGATTATGAGCTCCAGCTGGCCTCATACACCTCAGGA TGCAGGATTATGAGCTCCAGCTGGCTTCATACACCTCAGGA < 41bp 1 0.319824390646166 1 0.388523876667023 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DSP ENSG00000096696 CDS Human protein_coding chr6:7578027 chr6:7578032 synonymous SNV . 0 26 hm5C_associated_SNPs_41915 0 0 1 0 2 Nucleus 1 0.500231643921097 1 0.999536712157807 hm5C_site_41036 DeepMRMD:1;iRNA_m5C:0.999536712157807 41037 chr20 25198161 25198161 1 + C T UCEC 25198155 + 25198135 25198175 41 CAGGGCACCCTGCAGGCCTCCCCACCCGGCTACCTGACGGC CAGGGCACCCTGCAGGCCTCCCCACCTGGCTACCTGACGGC < 41bp 1 0.148779185794553 1 0.0681360363960266 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25198155 chr20:25198161 synonymous SNV . 0 27 hm5C_associated_SNPs_41916 0 0 1 0 2 Endoplasmic reticulum 1 0.500231640971538 1 0.999536718056924 hm5C_site_41037 DeepMRMD:1;iRNA_m5C:0.999536718056924 41038 chr4 7026929 7026929 1 + G T UCEC 7026933 + 7026913 7026953 41 AGGACCTGCCCGCCGAGGAGCTGTTTGCCTCCATCGCCACG AGGACCTGCCCGCCGATGAGCTGTTTGCCTCCATCGCCACG < 41bp 1 0.272763806933218 1 0.0397909879684448 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBC1D14 ENSG00000132405 CDS Human protein_coding chr4:7026933 chr4:7026929 nonsynonymous SNV 0.689 0 17 hm5C_associated_SNPs_41917 0 0 1 0 1 Cytosol 1 0.50023164394592 1 0.99953671210816 hm5C_site_41038 DeepMRMD:1;iRNA_m5C:0.99953671210816 41039 chr1 22307572 22307572 1 + G A UCEC 22307561 + 22307541 22307581 41 ACCTACCAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAA ACCTACCAGGTGGTGTTGGGCGAGTACGACCATGCTGTGAA < 41bp 1 0.628721351373288 1 0.456040024757385 experiment 0.742557297253424 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307561 chr1:22307572 nonsynonymous SNV 0.001 1 32 hm5C_associated_SNPs_41918 0 0 0 0 2 unknown 1 0.500231746713838 1 0.999536506572324 hm5C_site_41039 DeepMRMD:1;iRNA_m5C:0.999536506572324 41040 chr1 22307572 22307572 1 + G A UCEC 22307567 + 22307547 22307587 41 CAGGTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGG CAGGTGGTGTTGGGCGAGTACGACCATGCTGTGAAGGAGGG < 41bp 1 0.342910687518657 1 0.486939609050751 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307567 chr1:22307572 nonsynonymous SNV 0.001 1 26 hm5C_associated_SNPs_41919 0 0 0 0 2 unknown 1 0.500231643918996 1 0.999536712162008 hm5C_site_41040 DeepMRMD:1;iRNA_m5C:0.999536712162008 41041 chr1 22307572 22307572 1 + G A UCEC 22307570 + 22307550 22307590 41 GTGGTGTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCC GTGGTGTTGGGCGAGTACGACCATGCTGTGAAGGAGGGCCC < 41bp 1 0.187390940258825 1 0.585090577602386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307570 chr1:22307572 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_41920 0 0 0 0 2 unknown 1 0.500235462346569 0.829818844795228 0.999529075306863 hm5C_site_41041 DeepMRMD:0.829818844795228;iRNA_m5C:0.999529075306863 41042 chr1 22307572 22307572 1 + G A UCEC 22307575 + 22307555 22307595 41 GTTGGGCGAGTACGACCGTGCTGTGAAGGAGGGCCCCGAGC GTTGGGCGAGTACGACCATGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.661808202683946 1 0.175130695104599 experiment 0.676383594632109 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307575 chr1:22307572 nonsynonymous SNV 0.001 1 18 hm5C_associated_SNPs_41921 0 0 0 0 2 unknown 1 0.500231656439088 1 0.999536687121823 hm5C_site_41042 DeepMRMD:1;iRNA_m5C:0.999536687121823 41043 chr1 22307572 22307572 1 + G A UCEC 22307588 + 22307568 22307608 41 GACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT GACCATGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.23422089755653 1 0.127512246370316 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307588 chr1:22307572 nonsynonymous SNV 0.001 1 5 hm5C_associated_SNPs_41922 0 0 0 0 2 unknown 1 0.500231834118131 1 0.999536331763738 hm5C_site_41043 DeepMRMD:1;iRNA_m5C:0.999536331763738 41044 chr1 22307572 22307572 1 + G A UCEC 22307589 + 22307569 22307609 41 ACCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC ACCATGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATC < 41bp 1 0.571890841695976 1 0.414706349372864 experiment 0.856218316608048 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307589 chr1:22307572 nonsynonymous SNV 0.001 1 4 hm5C_associated_SNPs_41923 0 0 0 0 2 unknown 1 0.500231611048346 1 0.999536777903307 hm5C_site_41044 DeepMRMD:1;iRNA_m5C:0.999536777903307 41045 chr1 22307572 22307572 1 + G A UCEC 22307590 + 22307570 22307610 41 CCGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CCATGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.410436046554783 1 0.268902540206909 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307590 chr1:22307572 nonsynonymous SNV 0.001 1 3 hm5C_associated_SNPs_41924 0 0 0 0 2 unknown 1 0.500233234270353 1 0.999533531459294 hm5C_site_41045 DeepMRMD:1;iRNA_m5C:0.999533531459294 41046 chr1 22307572 22307572 1 + G A UCEC 22307591 + 22307571 22307611 41 CGTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA CATGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAA < 41bp 1 0.572392676431815 1 0.261330246925354 experiment 0.85521464713637 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3B ENSG00000219073 CDS Human protein_coding chr1:22307591 chr1:22307572 nonsynonymous SNV 0.001 1 2 hm5C_associated_SNPs_41925 0 0 0 0 2 unknown 1 0.500231100162682 1 0.999537799674635 hm5C_site_41046 DeepMRMD:1;iRNA_m5C:0.999537799674635 41047 chr11 93913003 93913003 1 + G A UCEC 93912995 + 93912975 93913015 41 GATCCTGAGAAACGACAGCACCGTGCCCGATCAGTTTCAGT GATCCTGAGAAACGACAGCACCGTGCCCAATCAGTTTCAGT < 41bp 1 0.154353586842247 1 0.0897596478462219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PANX1 ENSG00000110218 CDS Human protein_coding chr11:93912995 chr11:93913003 nonsynonymous SNV 0.007 0 29 hm5C_associated_SNPs_41926 0 0 0 0 0 Endoplasmic reticulum 1 0.500231428322736 1 0.999537143354528 hm5C_site_41047 DeepMRMD:1;iRNA_m5C:0.999537143354528 41048 chr17 45757963 45757963 1 + C T UCEC 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGGCGGAGATTGAAGACTAACAAA < 41bp 1 0.386324759344497 1 0.219311773777008 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757963 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_41927 0 0 1 0 2 Cytosol 1 0.500231643926885 1 0.999536712146229 hm5C_site_41048 DeepMRMD:1;iRNA_m5C:0.999536712146229 41049 chr1 171763642 171763642 1 + G T UCEC 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAATCTTTTCTACAGAATGTTAAAA < 41bp 1 0.15970573303175 1 0.0624492764472961 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763642 nonsynonymous SNV 0.982 0 34 hm5C_associated_SNPs_41928 0 0 1 0 1 Ribosome 1 0.500231643919318 1 0.999536712161364 hm5C_site_41049 DeepMRMD:1;iRNA_m5C:0.999536712161364 41050 chr10 80968149 80968149 1 + C T UCEC 80968135 + 80968115 80968155 41 TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGCGGAGAC TCCACAATGCCGCCACGGAGCTGCTGGACTGGTGTGGAGAC < 41bp 1 0.324311585000194 1 0.106821060180664 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:80968135 chr10:80968149 synonymous SNV . 0 35 hm5C_associated_SNPs_41929 0 0 1 0 2 Nucleus 1 0.500231329832033 1 0.999537340335933 hm5C_site_41050 DeepMRMD:1;iRNA_m5C:0.999537340335933 41051 chr14 103805646 103805646 1 + G T UCEC 103805638 + 103805618 103805658 41 TTAATGAGAAGATTAGAGAACAGATTAAGAAATACAGGCGC TTAATGAGAAGATTAGAGAACAGATTAATAAATACAGGCGC < 41bp 1 0.387974776246537 1 0.144428133964539 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805638 chr14:103805646 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_41931 0 0 1 0 1 Cytosol 1 0.500231644642547 1 0.999536710714906 hm5C_site_41051 DeepMRMD:1;iRNA_m5C:0.999536710714906 41052 chr5 140741142 140741142 1 + C T UCEC 140741124 + 140741104 140741144 41 GGCGCCTCTATCGCTCAAATCAGTGCCTCTGACCCTGACTT GGCGCCTCTATCGCTCAAATCAGTGCCTCTGACCCTGATTT < 41bp 1 0.205768379791359 1 0.357944309711456 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741124 chr5:140741142 synonymous SNV . 0 39 hm5C_associated_SNPs_41932 0 0 0 0 0 exosome 1 0.50023164390578 1 0.99953671218844 hm5C_site_41052 DeepMRMD:1;iRNA_m5C:0.99953671218844 41053 chr1 82372812 82372812 1 + G A UCEC 82372824 + 82372804 82372844 41 TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGT TTGAGAGCACTAACTATGGTCGGACGGATGACAAGATTTGT < 41bp 1 0.209586926800328 1 0.354738831520081 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82372824 chr1:82372812 nonsynonymous SNV 0.885 4 9 hm5C_associated_SNPs_41933 0 0 1 0 0 cytosol 1 0.500231643923012 1 0.999536712153975 hm5C_site_41053 DeepMRMD:1;iRNA_m5C:0.999536712153975 41054 chr15 22958328 22958328 1 + G T UCEC 22958333 + 22958313 22958353 41 CCTGGAGACCAAGGAGGCATCGATGATGGAGTGCGTGTCCT CCTGGAGACCAAGGATGCATCGATGATGGAGTGCGTGTCCT < 41bp 1 0.521632140131633 1 0.314628839492798 experiment 0.956735719736733 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22958333 chr15:22958328 nonsynonymous SNV . 0 16 hm5C_associated_SNPs_41934 0 0 1 0 1 Cytosol 1 0.500231643961835 1 0.999536712076331 hm5C_site_41054 DeepMRMD:1;iRNA_m5C:0.999536712076331 41055 chr11 125475562 125475562 1 + T C UCEC 125475549 + 125475529 125475569 41 GCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA GCCATCTTTTGCATGCTACTCACCTACTACATGCGGATCAA < 41bp 1 0.620505324852442 1 0.19466495513916 experiment 0.758989350295116 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125475549 chr11:125475562 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_41935 0 0 1 0 2 Endoplasmic reticulum 1 0.500231642835101 1 0.999536714329797 hm5C_site_41055 DeepMRMD:1;iRNA_m5C:0.999536714329797 41056 chr19 36034713 36034713 1 + C T UCEC 36034699 - 36034679 36034719 41 GTGTAGGCAAGGATGCCAGCCATGGGCCCCTTGGCTGCTGC GTGTAGACAAGGATGCCAGCCATGGGCCCCTTGGCTGCTGC < 41bp 1 0.501351246582287 1 0.547634541988373 experiment 0.997297506835425 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36034699 chr19:36034713 nonsynonymous SNV 0.989 3 7 hm5C_associated_SNPs_41936 0 0 1 0 0 chromatin 1 0.500231644040514 0.904730916023254 0.999536711918972 hm5C_site_41056 DeepMRMD:0.904730916023254;iRNA_m5C:0.999536711918972 41057 chr19 13051159 13051159 1 + G A UCEC 13051158 + 13051138 13051178 41 GAGTCCGGCTCCTTGGAAGACGATTGGGACTTCCTGCCACC GAGTCCGGCTCCTTGGAAGACAATTGGGACTTCCTGCCACC < 41bp 1 0.306900808595871 1 0.167683571577072 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051158 chr19:13051159 nonsynonymous SNV 0.785 4 22 hm5C_associated_SNPs_41937 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41057 DeepMRMD:1;iRNA_m5C:0.999536712157815 41058 chr19 13051159 13051159 1 + G A UCEC 13051171 + 13051151 13051191 41 TGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAG TGGAAGACAATTGGGACTTCCTGCCACCCAAGAAGATAAAG < 41bp 1 0.293406549410064 1 0.281727194786072 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051171 chr19:13051159 nonsynonymous SNV 0.785 4 9 hm5C_associated_SNPs_41938 0 0 1 0 0 Ribosome 1 0.500231643742779 1 0.999536712514442 hm5C_site_41058 DeepMRMD:1;iRNA_m5C:0.999536712514442 41059 chr19 13051159 13051159 1 + G A UCEC 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACAATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC < 41bp 1 0.340722787021451 1 0.115805715322495 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051159 nonsynonymous SNV 0.785 4 5 hm5C_associated_SNPs_41939 0 0 1 0 0 Ribosome 1 0.500231641924255 1 0.99953671615149 hm5C_site_41059 DeepMRMD:1;iRNA_m5C:0.99953671615149 41060 chr13 20233208 20233208 1 + G A UCEC 20233203 + 20233183 20233223 41 GGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAA GGATGAAGTTGGAAGATTTCCAAAAACACCTTGATGGGAAA < 41bp 1 0.686362101574595 1 0.827344715595245 experiment 0.62727579685081 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20233203 chr13:20233208 synonymous SNV . 0 26 hm5C_associated_SNPs_41940 0 0 1 0 2 Ribosome 1 0.500231643921115 0.34531056880951 0.999536712157771 hm5C_site_41060 DeepMRMD:0.34531056880951;iRNA_m5C:0.999536712157771 41061 chr14 103802216 103802216 1 + C T UCEC 103802231 + 103802211 103802251 41 TCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG TCAACTGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATG < 41bp 1 0.19156655520101 1 0.0682340264320374 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF5 ENSG00000100664 CDS Human protein_coding chr14:103802231 chr14:103802216 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_41941 0 0 1 0 1 Cytosol 1 0.500231640814732 1 0.999536718370536 hm5C_site_41061 DeepMRMD:1;iRNA_m5C:0.999536718370536 41062 chr19 46519591 46519591 1 + G A UCEC 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCACTTCGACCCCACGGCCTTTGTGAA < 41bp 1 0.293300237261592 1 0.353145718574524 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519591 nonsynonymous SNV 0.796 3 17 hm5C_associated_SNPs_41942 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41062 DeepMRMD:1;iRNA_m5C:0.999536712157815 41063 chr5 6746350 6746350 1 + G T UCEC 6746347 + 6746327 6746367 41 TTGCATCCAAGAATTGATGCCCGGAGAGCTGATGAAAACCT TTGCATCCAAGAATTGATGCCCGTAGAGCTGATGAAAACCT < 41bp 1 0.12230150175135 1 0.117856800556183 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6746347 chr5:6746350 synonymous SNV . 0 24 hm5C_associated_SNPs_41943 0 0 1 0 1 Nucleus 1 0.500231644749532 1 0.999536710500936 hm5C_site_41063 DeepMRMD:1;iRNA_m5C:0.999536710500936 41064 chr14 102452882 102452882 1 + C A UCEC 102452896 + 102452876 102452916 41 AACCAGCTTTACCCGTTTGCCATCTCACTGATCGAGAGCGT AACCAGATTTACCCGTTTGCCATCTCACTGATCGAGAGCGT < 41bp 1 0.0686433761273773 1 0.175414979457855 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102452896 chr14:102452882 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_41944 0 0 1 0 0 Cytosol 1 0.500229505647385 1 0.999540988705229 hm5C_site_41064 DeepMRMD:1;iRNA_m5C:0.999540988705229 41065 chr22 26242226 26242226 1 + G A UCEC 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGCGGTGAGGAGGAAAGCCCCATGCTCCCAGATCAAGC < 41bp 1 0.42862235203976 1 0.238795816898346 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242226 synonymous SNV . 0 25 hm5C_associated_SNPs_41945 0 0 0 0 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_41065 DeepMRMD:1;iRNA_m5C:0.999536712157818 41066 chr5 149212865 149212865 1 + G A UCEC 149212851 + 149212831 149212871 41 TCACCCAAGAGCACCGGGCCCAGACCAAGCCTGCGCCCACT TCACCCAAGAGCACCGGGCCCAGACCAAGCCTGCACCCACT < 41bp 1 0.237803765985884 1 0.124283969402313 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149212851 chr5:149212865 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_41946 0 0 0 0 0 chromatin 1 0.500231619777065 1 0.999536760445871 hm5C_site_41066 DeepMRMD:1;iRNA_m5C:0.999536760445871 41067 chr17 7401125 7401125 1 + G A UCEC 7401133 + 7401113 7401153 41 GACCAGGTTGGCGTGCCCCGCTCCATTGCTGCCAACATGAC GACCAGGTTGGCATGCCCCGCTCCATTGCTGCCAACATGAC < 41bp 1 0.640603462144373 1 0.916956782341003 experiment 0.718793075711255 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7401133 chr17:7401125 nonsynonymous SNV 0.998 3 13 hm5C_associated_SNPs_41947 0 0 1 0 1 Nucleus 1 0.500231643919485 0.166086435317994 0.99953671216103 hm5C_site_41067 DeepMRMD:0.166086435317994;iRNA_m5C:0.99953671216103 41068 chr11 62553756 62553756 1 + C T UCEC 62553759 + 62553739 62553779 41 AACGAGTCCTGTACCCACACCTGTCCACCTACTGGACAAAC AACGAGTCCTGTACCCATACCTGTCCACCTACTGGACAAAC < 41bp 1 0.0740322815581776 1 0.0321565270423889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF6L ENSG00000162227 CDS Human protein_coding chr11:62553759 chr11:62553756 nonsynonymous SNV 0.998 2 18 hm5C_associated_SNPs_41948 0 0 1 0 1 Ribosome 1 0.500231643921179 1 0.999536712157641 hm5C_site_41068 DeepMRMD:1;iRNA_m5C:0.999536712157641 41069 chr19 4013007 4013007 1 + C T UCEC 4013020 + 4013000 4013040 41 ACGAGCTCGTCACCAGGGCCCTCCAGCTGGTGCAGTTTGAC ACGAGCTTGTCACCAGGGCCCTCCAGCTGGTGCAGTTTGAC < 41bp 1 0.578623675371974 1 0.756624579429626 experiment 0.842752649256052 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4013020 chr19:4013007 synonymous SNV . 0 8 hm5C_associated_SNPs_41951 0 0 1 0 1 chromatin 1 0.500231647492373 0.486750841140748 0.999536705015254 hm5C_site_41069 DeepMRMD:0.486750841140748;iRNA_m5C:0.999536705015254 41070 chr4 76711330 76711330 1 + C T UCEC 76711339 + 76711319 76711359 41 CAGAAGTTATTCGAGGCTGCCAAGTAAACCAAGACTACTTT CAGAAGTTATTTGAGGCTGCCAAGTAAACCAAGACTACTTT < 41bp 1 0.365517186792958 1 0.347448140382767 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control USO1 ENSG00000138768 CDS Human protein_coding chr4:76711339 chr4:76711330 stopgain 0.997 1 12 hm5C_associated_SNPs_41952 0 0 1 0 2 Nucleus 1 0.500225415429177 1 0.999549169141646 hm5C_site_41070 DeepMRMD:1;iRNA_m5C:0.999549169141646 41071 chr11 118245893 118245893 1 + C T UCEC 118245886 + 118245866 118245906 41 CTCACCTTTAATCCCACATACTGTGCCCTCAAGGAGTTGAA CTCACCTTTAATCCCACATACTGTGCCTTCAAGGAGTTGAA < 41bp 1 0.183380718929517 1 0.0758862197399139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118245886 chr11:118245893 nonsynonymous SNV 0.994 3 28 hm5C_associated_SNPs_41953 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41071 DeepMRMD:1;iRNA_m5C:0.999536712157815 41072 chr17 37872134 37872134 1 + C A UCEC 37872129 + 37872109 37872149 41 TGCACACGGTGCCCTGGGACCAGCTCTTTCGGAACCCGCAC TGCACACGGTGCCCTGGGACCAGCTATTTCGGAACCCGCAC < 41bp 1 0.553875610065308 1 0.411798536777496 experiment 0.892248779869385 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37872129 chr17:37872134 synonymous SNV . 0 26 hm5C_associated_SNPs_41954 0 0 1 0 1 Cytosol 1 0.500231643910071 1 0.999536712179859 hm5C_site_41072 DeepMRMD:1;iRNA_m5C:0.999536712179859 41073 chr16 67314908 67314908 1 + G T UCEC 67314905 + 67314885 67314925 41 GCTGTACCTGCGAAGCATCCCCAGGTTTGAGGGAGGGGGTT GCTGTACCTGCGAAGCATCCCCATGTTTGAGGGAGGGGGTT < 41bp 1 0.103427441091042 1 0.136990904808044 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67314905 chr16:67314908 nonsynonymous SNV 0.963 3 24 hm5C_associated_SNPs_41955 0 0 1 0 1 Cytosol 1 0.500231643908336 1 0.999536712183328 hm5C_site_41073 DeepMRMD:1;iRNA_m5C:0.999536712183328 41074 chr3 182591767 182591767 1 + G T UCEC 182591776 + 182591756 182591796 41 GAAATCAGACAGCGAGTGTGCTGAACAATTGAGGCAGCTTG GAAATCAGACATCGAGTGTGCTGAACAATTGAGGCAGCTTG < 41bp 1 0.458637842426412 1 0.161102533340454 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182591776 chr3:182591767 nonsynonymous SNV 0.116 1 12 hm5C_associated_SNPs_41956 0 0 1 0 1 Endoplasmic reticulum 1 0.500213135608467 1 0.999573728783066 hm5C_site_41074 DeepMRMD:1;iRNA_m5C:0.999573728783066 41075 chr14 102792498 102792498 1 + G A UCEC 102792493 + 102792473 102792513 41 GCCCTCAGCTGCTCAGGGTACAGCCGCTTGTGAGAACCGAG GCCCTCAGCTGCTCAGGGTACAGCCACTTGTGAGAACCGAG < 41bp 1 0.268435108283225 1 0.195336163043976 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102792493 chr14:102792498 synonymous SNV . 0 26 hm5C_associated_SNPs_41957 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_41075 DeepMRMD:1;iRNA_m5C:0.999536712157814 41076 chr1 45243689 45243689 1 + G T UCEC 45243698 + 45243678 45243718 41 GAGGAAGAAGAGATTTTAAACAAAAAACGATCTAAAAAAAT GAGGAAGAAGATATTTTAAACAAAAAACGATCTAAAAAAAT < 41bp 1 0.361882964265577 1 0.451520532369614 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243698 chr1:45243689 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_41958 0 0 0 0 1 Cytosol 1 0.50023164295776 1 0.999536714084479 hm5C_site_41076 DeepMRMD:1;iRNA_m5C:0.999536714084479 41077 chr1 45243689 45243689 1 + G T UCEC 45243709 + 45243689 45243729 41 GATTTTAAACAAAAAACGATCTAAAAAAATTCAGAAGAAAT TATTTTAAACAAAAAACGATCTAAAAAAATTCAGAAGAAAT < 41bp 1 0.283989435619584 1 0.253224432468414 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243709 chr1:45243689 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_41959 0 0 0 0 1 Cytosol 1 0.500231728393106 1 0.999536543213788 hm5C_site_41077 DeepMRMD:1;iRNA_m5C:0.999536543213788 41078 chr9 33313659 33313659 1 + G T UCEC 33313662 + 33313642 33313682 41 GTCTTTACAGGCACACAGTTCGCTGTGGTCAGGCTGTCTCA GTCTTTACAGGCACACATTTCGCTGTGGTCAGGCTGTCTCA < 41bp 1 0.542147072413945 1 0.807722151279449 experiment 0.915705855172111 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33313662 chr9:33313659 nonsynonymous SNV 0.998 4 18 hm5C_associated_SNPs_41960 0 0 1 0 1 Nucleus 1 0.50023166171714 0.384555697441102 0.99953667656572 hm5C_site_41078 DeepMRMD:0.384555697441102;iRNA_m5C:0.99953667656572 41079 chr17 29857373 29857373 1 + C T UCEC 29857365 + 29857345 29857385 41 AGAATTATAAGCTGCGGGATCAGAACGACGACTTGAATGGG AGAATTATAAGCTGCGGGATCAGAACGATGACTTGAATGGG < 41bp 1 0.35175150905066 1 0.550864338874817 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29857365 chr17:29857373 synonymous SNV . 0 29 hm5C_associated_SNPs_41961 0 0 1 0 1 Ribosome 1 0.500232648846842 0.898271322250366 0.999534702306316 hm5C_site_41079 DeepMRMD:0.898271322250366;iRNA_m5C:0.999534702306316 41080 chr10 93605610 93605610 1 + A C UCEC 93605612 + 93605592 93605632 41 AGCAGCCCAAAAGGGACGAACACAGCTTTGTGCTTTGTTGC AGCAGCCCAAAAGGGACGCACACAGCTTTGTGCTTTGTTGC < 41bp 1 0.369525432310222 1 0.151111721992493 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93605612 chr10:93605610 synonymous SNV . 0 19 hm5C_associated_SNPs_41962 0 0 1 0 1 Ribosome 1 0.500231643966943 1 0.999536712066114 hm5C_site_41080 DeepMRMD:1;iRNA_m5C:0.999536712066114 41081 chr6 43188313 43188313 1 + C A UCEC 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTATC < 41bp 1 0.441788211716442 1 0.411536008119583 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188313 synonymous SNV . 0 39 hm5C_associated_SNPs_41966 0 0 0 0 1 chromatin 1 0.500231643786503 1 0.999536712426994 hm5C_site_41081 DeepMRMD:1;iRNA_m5C:0.999536712426994 41082 chr19 42398349 42398349 1 + G T UCEC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAATAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT < 41bp 1 0.125150237548605 1 0.447215974330902 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398349 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_41967 0 0 1 0 2 Cytosol 1 0.500231643921096 1 0.999536712157809 hm5C_site_41082 DeepMRMD:1;iRNA_m5C:0.999536712157809 41083 chr11 65063437 65063437 1 + G A UCEC 65063444 + 65063424 65063464 41 TCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGAAGGTA TCCTCATCATCCCATCAGAGCTGAGGTACTTCGTGAAGGTA < 41bp 1 0.29682996792015 1 0.0581005215644836 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLA2 ENSG00000014138 CDS Human protein_coding chr11:65063444 chr11:65063437 synonymous SNV . 0 14 hm5C_associated_SNPs_41968 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164742109 1 0.999536705157821 hm5C_site_41083 DeepMRMD:1;iRNA_m5C:0.999536705157821 41084 chr12 9070335 9070335 1 + G A UCEC 9070333 + 9070313 9070353 41 GGGAGTTCTAGCTCAGGGGGCAGCTCTCGGCCCCAGATAGC GGGAGTTCTAGCTCAGGGGGCAACTCTCGGCCCCAGATAGC < 41bp 1 0.127492376991692 1 0.126035124063492 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHC1 ENSG00000111752 CDS Human protein_coding chr12:9070333 chr12:9070335 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_41969 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_41084 DeepMRMD:1;iRNA_m5C:0.999536712157815 41085 chr2 171822300 171822300 1 + G A UCEC 171822305 + 171822285 171822325 41 CCGTTTTTGTCCTAGGTCTGCCACCTCTTCCTTCCATGCCT CCGTTTTTGTCCTAGATCTGCCACCTCTTCCTTCCATGCCT < 41bp 1 0.127527970093027 1 0.0702346861362457 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171822305 chr2:171822300 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_41970 0 0 1 0 1 Ribosome 1 0.500231643921084 1 0.999536712157832 hm5C_site_41085 DeepMRMD:1;iRNA_m5C:0.999536712157832 41086 chr1 151063024 151063024 1 + C T UCEC 151063038 + 151063018 151063058 41 GACATGCGCACATCGTGGAACTGCTTGTTCGGGTAAAGCAA GACATGTGCACATCGTGGAACTGCTTGTTCGGGTAAAGCAA < 41bp 1 0.424341051769106 1 0.175727218389511 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151063038 chr1:151063024 nonsynonymous SNV 0.752 0 7 hm5C_associated_SNPs_41971 0 0 0 0 1 chromatin 1 0.500231643034756 1 0.999536713930488 hm5C_site_41086 DeepMRMD:1;iRNA_m5C:0.999536713930488 41087 chr8 59347027 59347027 1 + C T UCEC 59347026 + 59347006 59347046 41 AATTGAGACCTTACAATGAACCAACAAATGCTCAATTTCTG AATTGAGACCTTACAATGAACTAACAAATGCTCAATTTCTG < 41bp 1 0.162282751946251 1 0.0614343881607056 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBXN2B ENSG00000215114 CDS Human protein_coding chr8:59347026 chr8:59347027 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_41972 0 0 0 0 1 Cytosol 1 0.500231643930155 1 0.99953671213969 hm5C_site_41087 DeepMRMD:1;iRNA_m5C:0.99953671213969 41088 chr11 4091346 4091346 1 + G A UCEC 4091338 + 4091318 4091358 41 GGCTGCTGGTTTGCCTATATCCAGAACCGTTACTCCAAGGA GGCTGCTGGTTTGCCTATATCCAGAACCATTACTCCAAGGA < 41bp 1 0.673949060429481 1 0.659039676189423 experiment 0.652101879141037 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4091338 chr11:4091346 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_41973 0 0 1 0 2 Endoplasmic reticulum 1 0.500231576751345 0.681920647621154 0.999536846497309 hm5C_site_41088 DeepMRMD:0.681920647621154;iRNA_m5C:0.999536846497309 41089 chr19 36510139 36510139 1 + C T UCEC 36510143 + 36510123 36510163 41 TTCTTGCCCTCAGGTTCGTCCAGCTCCACGCCCACCCACTG TTCTTGCCCTCAGGTTTGTCCAGCTCCACGCCCACCCACTG < 41bp 1 0.464169440029277 1 0.738029062747955 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510143 chr19:36510139 nonsynonymous SNV 0.994 3 17 hm5C_associated_SNPs_41974 0 0 0 0 1 unknown 1 0.500231643921092 0.52394187450409 0.999536712157816 hm5C_site_41089 DeepMRMD:0.52394187450409;iRNA_m5C:0.999536712157816 41090 chr11 67075182 67075182 1 + G A UCEC 67075191 + 67075171 67075211 41 CTGGAGTCTCTGCGGCCTCCCAGCGCCGAGCCTGGCGGGTC CTGGAGTCTCTACGGCCTCCCAGCGCCGAGCCTGGCGGGTC < 41bp 1 0.628298825376902 1 0.728013217449188 experiment 0.743402349246196 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075191 chr11:67075182 synonymous SNV . 0 12 hm5C_associated_SNPs_41975 0 0 1 0 1 nucleus 1 0.500231643920432 0.543973565101624 0.999536712159137 hm5C_site_41090 DeepMRMD:0.543973565101624;iRNA_m5C:0.999536712159137 41091 chr18 13096283 13096283 1 + G A UCEC 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTGGCCAGCGCATTGCCTCACAGTCACGCCACAGCATGGAT < 41bp 1 0.122978274865582 1 0.0866160094738007 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096283 synonymous SNV . 0 31 hm5C_associated_SNPs_41976 0 0 1 0 0 Nucleus 1 0.500231651450348 1 0.999536697099305 hm5C_site_41091 DeepMRMD:1;iRNA_m5C:0.999536697099305 41092 chr1 110586361 110586361 1 + G T UCEC 110586381 + 110586361 110586401 41 GTCTGGAGGGGGAGACGTTTCCCCTGGAACGGGATGAAGTG TTCTGGAGGGGGAGACGTTTCCCCTGGAACGGGATGAAGTG < 41bp 1 0.626952236245856 1 0.159138083457947 experiment 0.746095527508289 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110586381 chr1:110586361 nonsynonymous SNV 0.998 2 1 hm5C_associated_SNPs_41977 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41092 DeepMRMD:1;iRNA_m5C:0.999536712157815 41093 chr8 26227811 26227811 1 + G T UCEC 26227822 + 26227802 26227842 41 ATGAAATAAGTGTTGACAGCCTAGACTTCAATAAGAAAATC ATGAAATAATTGTTGACAGCCTAGACTTCAATAAGAAAATC < 41bp 1 0.592777201941934 1 0.215752869844437 experiment 0.814445596116133 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26227822 chr8:26227811 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_41978 0 0 1 0 0 Cytosol 1 0.500231166659246 1 0.999537666681507 hm5C_site_41093 DeepMRMD:1;iRNA_m5C:0.999537666681507 41094 chr20 43052693 43052693 1 + C T UCEC 43052674 + 43052654 43052694 41 GTAGATGCCAAGGGGCTGAGCGATCCAGGGAAGATCAAGCG GTAGATGCCAAGGGGCTGAGCGATCCAGGGAAGATCAAGTG < 41bp 1 0.165406028760225 1 0.397149056196213 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HNF4A ENSG00000101076 CDS Human protein_coding chr20:43052674 chr20:43052693 nonsynonymous SNV 0.998 5 40 hm5C_associated_SNPs_41980 0 0 1 0 1 Ribosome 1 0.500230708492577 1 0.999538583014846 hm5C_site_41094 DeepMRMD:1;iRNA_m5C:0.999538583014846 41095 chr9 35846278 35846278 1 + T C UCEC 35846259 + 35846239 35846279 41 TTCCTTCTCCCTTCAGAGTCCCTGGCCGGCTTCCTCCTCTC TTCCTTCTCCCTTCAGAGTCCCTGGCCGGCTTCCTCCTCCC < 41bp 1 0.190092708976101 1 0.0487965047359467 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35846259 chr9:35846278 nonsynonymous SNV 0.911 1 40 hm5C_associated_SNPs_41981 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41095 DeepMRMD:1;iRNA_m5C:0.999536712157815 41096 chr9 35846278 35846278 1 + T C UCEC 35846279 + 35846259 35846299 41 CCTGGCCGGCTTCCTCCTCTCTGTCAGTGCCACCACCAGGG CCTGGCCGGCTTCCTCCTCCCTGTCAGTGCCACCACCAGGG < 41bp 1 0.316269716912252 1 0.0958490669727325 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35846279 chr9:35846278 nonsynonymous SNV 0.911 1 20 hm5C_associated_SNPs_41982 0 0 0 0 0 cytosol 1 0.500231643920967 1 0.999536712158065 hm5C_site_41096 DeepMRMD:1;iRNA_m5C:0.999536712158065 41097 chr10 122664313 122664313 1 + C T UCEC 122664294 + 122664274 122664314 41 CACCATTAAGTTGGTGGCAACGAATATGATTGCCAATGGCA CACCATTAAGTTGGTGGCAACGAATATGATTGCCAATGGTA < 41bp 1 0.201389291460733 1 0.298098653554916 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDR11 ENSG00000120008 CDS Human protein_coding chr10:122664294 chr10:122664313 synonymous SNV . 0 40 hm5C_associated_SNPs_41984 0 0 1 0 1 Nucleus 1 0.500231643921103 1 0.999536712157794 hm5C_site_41097 DeepMRMD:1;iRNA_m5C:0.999536712157794 41098 chr9 37357125 37357125 1 + T G UCEC 37357114 + 37357094 37357134 41 AACCCAGAAGCCTTCTAAGCCCTTTCACCGTTCATCACATT AACCCAGAAGCCTTCTAAGCCCTTTCACCGTGCATCACATT < 41bp 1 0.0211927815376013 1 0.0437401831150055 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZCCHC7 ENSG00000147905 CDS Human protein_coding chr9:37357114 chr9:37357125 nonsynonymous SNV 0.003 0 32 hm5C_associated_SNPs_41985 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41098 DeepMRMD:1;iRNA_m5C:0.999536712157815 41099 chr4 3205784 3205784 1 + A C UCEC 3205778 + 3205758 3205798 41 GTTACTTAGTCCCCAGATGTCTGGAGAAGAGGAGGATTCTG GTTACTTAGTCCCCAGATGTCTGGAGCAGAGGAGGATTCTG < 41bp 1 0.656414844690216 1 0.850450992584229 experiment 0.687170310619567 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3205778 chr4:3205784 nonsynonymous SNV 0.986 0 27 hm5C_associated_SNPs_41986 0 0 1 0 2 Cytosol 1 0.500231644080584 0.299098014831542 0.999536711838832 hm5C_site_41099 DeepMRMD:0.299098014831542;iRNA_m5C:0.999536711838832 41100 chr22 31485784 31485784 1 + C A UCEC 31485804 + 31485784 31485824 41 CTGCGAGCCCCACCTGGGAGCACATCCAGCTCACCTGCCTC ATGCGAGCCCCACCTGGGAGCACATCCAGCTCACCTGCCTC < 41bp 1 0.19354141314955 1 0.172720342874527 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMTN ENSG00000183963 CDS Human protein_coding chr22:31485804 chr22:31485784 nonsynonymous SNV 0.923 3 1 hm5C_associated_SNPs_41987 0 0 1 0 1 Cytosol 1 0.5002316439211 1 0.999536712157801 hm5C_site_41100 DeepMRMD:1;iRNA_m5C:0.999536712157801 41101 chr11 61505629 61505629 1 + G T UCEC 61505613 + 61505593 61505633 41 CGTTCCCTCCCCAGGATTGGCCTCTCTCAGCTGGAAGGCTT CGTTCCCTCCCCAGGATTGGCCTCTCTCAGCTGGAATGCTT < 41bp 1 0.028293708944796 1 0.0326513350009918 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61505613 chr11:61505629 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_41988 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164393859 1 0.99953671212282 hm5C_site_41101 DeepMRMD:1;iRNA_m5C:0.99953671212282 41102 chr12 112926261 112926261 1 + G A UCEC 112926274 + 112926254 112926294 41 ATTGGCCGGACAGGGACGTTCATTGTGATTGATATTCTTAT ATTGGCCAGACAGGGACGTTCATTGTGATTGATATTCTTAT < 41bp 1 0.144809631366017 1 0.0155549347400665 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926274 chr12:112926261 nonsynonymous SNV 1.000 5 8 hm5C_associated_SNPs_41989 0 0 1 0 2 Ribosome 1 0.500231638921427 1 0.999536722157145 hm5C_site_41102 DeepMRMD:1;iRNA_m5C:0.999536722157145 41103 chr7 66703400 66703400 1 + G A UCEC 66703395 + 66703375 66703415 41 TGGATCAAAAACGTTCAGCGCAAAGGATTATATGGCCAGAA TGGATCAAAAACGTTCAGCGCAAAGAATTATATGGCCAGAA < 41bp 1 0.293070646690266 1 0.124800711870193 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66703395 chr7:66703400 nonsynonymous SNV 0.975 1 26 hm5C_associated_SNPs_41990 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921454 1 0.999536712157092 hm5C_site_41103 DeepMRMD:1;iRNA_m5C:0.999536712157092 41104 chr20 4679918 4679918 1 + G A UCEC 4679908 + 4679888 4679928 41 ATGCTGGTTCTCTTTGTGGCCACATGGAGTGACCTGGGCCT ATGCTGGTTCTCTTTGTGGCCACATGGAGTAACCTGGGCCT < 41bp 1 0.612488339838592 1 0.804550409317017 experiment 0.775023320322816 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRNP ENSG00000171867 CDS Human protein_coding chr20:4679908 chr20:4679918 nonsynonymous SNV 0.994 2 31 hm5C_associated_SNPs_41991 0 0 1 0 1 Ribosome 1 0.500231668394778 0.390899181365966 0.999536663210444 hm5C_site_41104 DeepMRMD:0.390899181365966;iRNA_m5C:0.999536663210444 41105 chr11 10783513 10783513 1 + G A UCEC 10783524 + 10783504 10783544 41 TTAAAAATGGTGTCCAGCTTCTTTCCAGAGCCTATACTATT TTAAAAATGATGTCCAGCTTCTTTCCAGAGCCTATACTATT < 41bp 1 0.0324571514650097 1 0.0441203117370605 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTR9 ENSG00000198730 CDS Human protein_coding chr11:10783524 chr11:10783513 nonsynonymous SNV 0.992 4 10 hm5C_associated_SNPs_41992 0 0 1 0 2 Cytosol 1 0.500231651064099 1 0.999536697871802 hm5C_site_41105 DeepMRMD:1;iRNA_m5C:0.999536697871802 41106 chr9 35560814 35560814 1 + C T UCEC 35560834 + 35560814 35560854 41 CGAAAAGCCCAGCGGGAGGCCCGGCCCACAAATAGGTGAGA TGAAAAGCCCAGCGGGAGGCCCGGCCCACAAATAGGTGAGA < 41bp 1 0.0912974429835068 1 0.517706453800201 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RUSC2 ENSG00000198853 CDS Human protein_coding chr9:35560834 chr9:35560814 stopgain 0.984 1 1 hm5C_associated_SNPs_41993 0 0 0 0 1 Cytosol 1 0.500231643972899 0.964587092399598 0.999536712054201 hm5C_site_41106 DeepMRMD:0.964587092399598;iRNA_m5C:0.999536712054201 41107 chr7 129096288 129096288 1 + C T UCEC 129096284 + 129096264 129096304 41 CCTGTTTCTTCCTTAGTTTACCCTCGGTGGATTTGAGCATC CCTGTTTCTTCCTTAGTTTACCCTTGGTGGATTTGAGCATC < 41bp 1 0.156127709524209 1 0.0543960928916931 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129096284 chr7:129096288 synonymous SNV . 0 25 hm5C_associated_SNPs_41994 0 0 1 0 1 Nucleus 1 0.50023164392093 1 0.999536712158139 hm5C_site_41107 DeepMRMD:1;iRNA_m5C:0.999536712158139 41108 chr4 119200355 119200355 1 + C T UCEC 119200363 + 119200343 119200383 41 ATCTCCATGTATCTTTGGGACCTGTCAGCCGTGGCAGTCTC ATCTCCATGTATTTTTGGGACCTGTCAGCCGTGGCAGTCTC < 41bp 1 0.0737367105923335 1 0.0357979536056519 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200363 chr4:119200355 . . 0 13 hm5C_associated_SNPs_41995 0 0 1 0 0 unknown 1 0.500231624556224 1 0.999536750887552 hm5C_site_41108 DeepMRMD:1;iRNA_m5C:0.999536750887552 41109 chr4 119200355 119200355 1 + C T UCEC 119200364 + 119200344 119200384 41 TCTCCATGTATCTTTGGGACCTGTCAGCCGTGGCAGTCTCC TCTCCATGTATTTTTGGGACCTGTCAGCCGTGGCAGTCTCC < 41bp 1 0.0891311386546181 1 0.0297324359416962 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200364 chr4:119200355 . . 0 12 hm5C_associated_SNPs_41996 0 0 1 0 0 unknown 1 0.500231643921048 1 0.999536712157905 hm5C_site_41109 DeepMRMD:1;iRNA_m5C:0.999536712157905 41110 chr4 119200355 119200355 1 + C T UCEC 119200368 + 119200348 119200388 41 CATGTATCTTTGGGACCTGTCAGCCGTGGCAGTCTCCCTTC CATGTATTTTTGGGACCTGTCAGCCGTGGCAGTCTCCCTTC < 41bp 1 0.540902673739234 1 0.637139022350311 experiment 0.918194652521532 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200368 chr4:119200355 . . 0 8 hm5C_associated_SNPs_41997 0 0 1 0 0 unknown 1 0.500231643921092 0.725721955299378 0.999536712157815 hm5C_site_41110 DeepMRMD:0.725721955299378;iRNA_m5C:0.999536712157815 41111 chr4 119200355 119200355 1 + C T UCEC 119200371 + 119200351 119200391 41 GTATCTTTGGGACCTGTCAGCCGTGGCAGTCTCCCTTCCTA GTATTTTTGGGACCTGTCAGCCGTGGCAGTCTCCCTTCCTA < 41bp 1 0.293920248383327 1 0.800353765487671 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200371 chr4:119200355 . . 0 5 hm5C_associated_SNPs_41998 0 0 1 0 0 unknown 1 0.500231643921092 0.399292469024658 0.999536712157815 hm5C_site_41111 DeepMRMD:0.399292469024658;iRNA_m5C:0.999536712157815 41112 chr4 119200355 119200355 1 + C T UCEC 119200372 + 119200352 119200392 41 TATCTTTGGGACCTGTCAGCCGTGGCAGTCTCCCTTCCTAG TATTTTTGGGACCTGTCAGCCGTGGCAGTCTCCCTTCCTAG < 41bp 1 0.538810674018924 1 0.782440662384033 experiment 0.922378651962152 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORA24 ENSG00000269893 ncRNA_exonic Human lincRNA chr4:119200372 chr4:119200355 . . 0 4 hm5C_associated_SNPs_41999 0 0 1 0 0 unknown 1 0.500231638227061 0.435118675231934 0.999536723545878 hm5C_site_41112 DeepMRMD:0.435118675231934;iRNA_m5C:0.999536723545878 41113 chr12 3149338 3149338 1 + G C UCEC 3149330 + 3149310 3149350 41 ACCGCATCCACCGGTCCCCGCTCTGTGAGTACATGATCAAC ACCGCATCCACCGGTCCCCGCTCTGTGACTACATGATCAAC < 41bp 1 0.150204680084144 1 0.347613036632538 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3149330 chr12:3149338 nonsynonymous SNV 0.995 1 29 hm5C_associated_SNPs_42000 0 0 1 0 2 Cytosol 1 0.500231487190583 1 0.999537025618835 hm5C_site_41113 DeepMRMD:1;iRNA_m5C:0.999537025618835 41114 chr4 38937395 38937395 1 + C A UCEC 38937401 + 38937381 38937421 41 GAAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTAC GAAGTTTACGAATTATTTAACCACTGTTGGGGTAAGATTAC < 41bp 1 0.0916483499385153 1 0.120547950267792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937401 chr4:38937395 nonsynonymous SNV 0.784 1 15 hm5C_associated_SNPs_42001 0 0 1 0 2 Cytosol 1 0.50023164397006 1 0.99953671205988 hm5C_site_41114 DeepMRMD:1;iRNA_m5C:0.99953671205988 41115 chr4 38937395 38937395 1 + C A UCEC 38937402 + 38937382 38937422 41 AAGTTTACGAATTCTTTAACCACTGTTGGGGTAAGATTACA AAGTTTACGAATTATTTAACCACTGTTGGGGTAAGATTACA < 41bp 1 0.214225086712407 1 0.187070816755295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38937402 chr4:38937395 nonsynonymous SNV 0.784 1 14 hm5C_associated_SNPs_42002 0 0 1 0 2 Cytosol 1 0.500231643922193 1 0.999536712155613 hm5C_site_41115 DeepMRMD:1;iRNA_m5C:0.999536712155613 41116 chr10 135197560 135197560 1 + A G UCEC 135197543 + 135197523 135197563 41 GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAAAAT GAAGCAATCAGGAAGATAGGCTTTGGGACCAACAACAGAAT < 41bp 1 0.141340828463402 1 0.0644612312316895 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PAOX ENSG00000148832 CDS Human protein_coding chr10:135197543 chr10:135197560 nonsynonymous SNV 0.996 5 38 hm5C_associated_SNPs_42003 0 0 0 0 2 exosome 1 0.500231643917947 1 0.999536712164105 hm5C_site_41116 DeepMRMD:1;iRNA_m5C:0.999536712164105 41117 chr3 155628661 155628661 1 + C T UCEC 155628644 + 155628624 155628664 41 CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCACGTC CTTGAGTGTATTCGAGAGATCAAAGAGAGAGTAGGCATGTC < 41bp 1 0.494052176075427 1 0.190050572156906 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155628644 chr3:155628661 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_42004 0 0 1 0 1 Nucleus 1 0.50023164392111 1 0.999536712157781 hm5C_site_41117 DeepMRMD:1;iRNA_m5C:0.999536712157781 41118 chr17 4846490 4846490 1 + G A UCEC 4846476 + 4846456 4846496 41 TGGTCATCCTTTTCCCAGGGCTCGGGTGCTTCTGGTTCCAG TGGTCATCCTTTTCCCAGGGCTCGGGTGCTTCTGATTCCAG < 41bp 1 0.628168949668332 1 0.115374863147736 experiment 0.743662100663337 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846476 chr17:4846490 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_42005 0 0 1 0 2 Ribosome 1 0.500231643921085 1 0.99953671215783 hm5C_site_41118 DeepMRMD:1;iRNA_m5C:0.99953671215783 41119 chr12 27908166 27908166 1 + T C UCEC 27908148 + 27908128 27908168 41 GGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGTATATAT GGAAAAAAGTAAGACTGAAGCAGACATGGAAGAGTATACAT < 41bp 1 0.524419864169726 1 0.814183235168457 experiment 0.951160271660548 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27908148 chr12:27908166 nonsynonymous SNV 0.749 0 39 hm5C_associated_SNPs_42006 0 0 1 0 1 Ribosome 1 0.500231643753841 0.371633529663086 0.999536712492318 hm5C_site_41119 DeepMRMD:0.371633529663086;iRNA_m5C:0.999536712492318 41120 chr17 37872116 37872116 1 + G A UCEC 37872129 + 37872109 37872149 41 TGCACACGGTGCCCTGGGACCAGCTCTTTCGGAACCCGCAC TGCACACAGTGCCCTGGGACCAGCTCTTTCGGAACCCGCAC < 41bp 1 0.47619935106922 1 0.241555601358414 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37872129 chr17:37872116 synonymous SNV . 0 8 hm5C_associated_SNPs_42007 0 0 1 0 1 Cytosol 1 0.500231644006424 1 0.999536711987151 hm5C_site_41120 DeepMRMD:1;iRNA_m5C:0.999536711987151 41121 chr1 45267334 45267334 1 + A G UCEC 45267317 + 45267297 45267337 41 CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGGGCC < 41bp 1 0.243001246965872 1 0.514010369777679 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267317 chr1:45267334 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_42009 0 0 0 1 2 Cytosol 1 0.50023164403017 0.971979260444642 0.99953671193966 hm5C_site_41121 DeepMRMD:0.971979260444642;iRNA_m5C:0.99953671193966 41122 chr22 39773695 39773695 1 + G A UCEC 39773703 + 39773683 39773723 41 GGCACAGCCGTAGGCCTCCCCGGCTTGCAGAGGCCGGCAGC GGCACAGCCGTAAGCCTCCCCGGCTTGCAGAGGCCGGCAGC < 41bp 1 0.405743730222616 1 0.389322638511658 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SYNGR1 ENSG00000100321 CDS Human protein_coding chr22:39773703 chr22:39773695 synonymous SNV . 0 13 hm5C_associated_SNPs_42010 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_41122 DeepMRMD:1;iRNA_m5C:0.999536712157815 41123 chr3 38524729 38524729 1 + G A UCEC 38524735 + 38524715 38524755 41 GGTGTCCCTGATTCGGAGGTCGGTCAACGGCACTACCTCGG GGTGTCCCTGATTCAGAGGTCGGTCAACGGCACTACCTCGG < 41bp 1 0.23890483296583 1 0.423007249832153 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38524735 chr3:38524729 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_42011 0 0 1 0 0 Ribosome 1 0.500231386305848 1 0.999537227388304 hm5C_site_41123 DeepMRMD:1;iRNA_m5C:0.999537227388304 41124 chr3 47374693 47374693 1 + G T UCEC 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ACGACCGGGAGCAGATGGGTCCCTACCTGCCTGAGCTGCTG < 41bp 1 0.317917712688329 1 0.415431201457977 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374693 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_42012 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41124 DeepMRMD:1;iRNA_m5C:0.999536712157815 41125 chr2 54858605 54858605 1 + C T UCEC 54858614 + 54858594 54858634 41 ACATGTTTCTGCGGCAGCGGCTGCAGGCCCTGGACACTGGA ACATGTTTCTGTGGCAGCGGCTGCAGGCCCTGGACACTGGA < 41bp 1 0.598292123582888 1 0.633755803108215 experiment 0.803415752834225 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858614 chr2:54858605 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_42013 0 0 1 0 0 Nucleus 1 0.500231643921094 0.73248839378357 0.999536712157811 hm5C_site_41125 DeepMRMD:0.73248839378357;iRNA_m5C:0.999536712157811 41126 chr2 54858605 54858605 1 + C T UCEC 54858617 + 54858597 54858637 41 TGTTTCTGCGGCAGCGGCTGCAGGCCCTGGACACTGGATGG TGTTTCTGTGGCAGCGGCTGCAGGCCCTGGACACTGGATGG < 41bp 1 0.3321666766356 1 0.704983353614807 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858617 chr2:54858605 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_42014 0 0 1 0 0 Nucleus 1 0.500231643921093 0.590033292770386 0.999536712157815 hm5C_site_41126 DeepMRMD:0.590033292770386;iRNA_m5C:0.999536712157815 41127 chr2 54858605 54858605 1 + C T UCEC 54858621 + 54858601 54858641 41 TCTGCGGCAGCGGCTGCAGGCCCTGGACACTGGATGGAACG TCTGTGGCAGCGGCTGCAGGCCCTGGACACTGGATGGAACG < 41bp 1 0.174997238703406 1 0.10527765750885 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858621 chr2:54858605 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_42015 0 0 1 0 0 Nucleus 1 0.500231643921946 1 0.999536712156108 hm5C_site_41127 DeepMRMD:1;iRNA_m5C:0.999536712156108 41128 chr6 118015229 118015229 1 + C A UCEC 118015223 + 118015203 118015243 41 GCCATTTGGCAGTGAAGGTGCTGTCTCCGGAAGATGGAAAA GCCATTTGGCAGTGAAGGTGCTGTCTACGGAAGATGGAAAA < 41bp 1 0.215488560098295 1 0.541188657283783 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUS1 ENSG00000153989 CDS Human protein_coding chr6:118015223 chr6:118015229 nonsynonymous SNV 0.976 1 27 hm5C_associated_SNPs_42016 0 0 0 0 1 Endoplasmic reticulum 1 0.500230800805578 0.917622685432434 0.999538398388844 hm5C_site_41128 DeepMRMD:0.917622685432434;iRNA_m5C:0.999538398388844 41129 chr1 45267325 45267325 1 + C T UCEC 45267317 + 45267297 45267337 41 CTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGAGCC CTGGCCCACATCTGGAAGGCCCGGCACATCCTGTTGGAGCC < 41bp 1 0.228376033942167 1 0.526292681694031 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267317 chr1:45267325 nonsynonymous SNV 0.993 1 29 hm5C_associated_SNPs_42017 0 0 1 1 2 Cytosol 1 0.500231660213082 0.947414636611938 0.999536679573835 hm5C_site_41129 DeepMRMD:0.947414636611938;iRNA_m5C:0.999536679573835 41130 chr9 4697135 4697135 1 + C A UCEC 4697148 + 4697128 4697168 41 TTTTTGTCTGACCATCCATACCTTGTATGTGAAGAAACTGC TTTTTGTATGACCATCCATACCTTGTATGTGAAGAAACTGC < 41bp 1 0.055942349128512 1 0.0593304932117462 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC37L1 ENSG00000106993 CDS Human protein_coding chr9:4697148 chr9:4697135 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_42018 0 0 1 0 2 Ribosome 1 0.500230426551118 1 0.999539146897763 hm5C_site_41130 DeepMRMD:1;iRNA_m5C:0.999539146897763 41131 chrX 153677070 153677070 1 + G A UCEC 153677085 + 153677065 153677105 41 CTGCGGCAGGAGTGGGAAGCCAAGCAGGAGAAGATCAAGAG CTGCGACAGGAGTGGGAAGCCAAGCAGGAGAAGATCAAGAG < 41bp 1 0.675442536768906 1 0.748172283172607 experiment 0.649114926462187 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout FAM50A ENSG00000071859 CDS Human protein_coding chrX:153677085 chrX:153677070 synonymous SNV . 0 6 hm5C_associated_SNPs_42019 0 0 1 0 1 Ribosome 1 0.500231643921079 0.503655433654786 0.999536712157842 hm5C_site_41131 DeepMRMD:0.503655433654786;iRNA_m5C:0.999536712157842 41132 chrX 24073093 24073093 1 + G A UCEC 24073094 + 24073074 24073114 41 TCTTTTGGCAACATGGCGGGCGGAGAAGCTGGAGTGACTCT TCTTTTGGCAACATGGCGGACGGAGAAGCTGGAGTGACTCT < 41bp 1 0.68488982497517 1 0.488284826278687 experiment 0.63022035004966 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EIF2S3 ENSG00000130741 CDS Human protein_coding chrX:24073094 chrX:24073093 nonsynonymous SNV 0.485 1 20 hm5C_associated_SNPs_42020 0 0 1 0 1 Cytosol 1 0.500231643921568 1 0.999536712156863 hm5C_site_41132 DeepMRMD:1;iRNA_m5C:0.999536712156863 41133 chr1 154988762 154988762 1 + C T UCEC 154988768 + 154988748 154988788 41 TCATGCCCGCACTGCCCAGCCCGCTTCCTGCACAGCTACGA TCATGCCCGCACTGTCCAGCCCGCTTCCTGCACAGCTACGA < 41bp 1 0.211119997350988 1 0.104627966880798 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154988768 chr1:154988762 synonymous SNV . 0 15 hm5C_associated_SNPs_42021 0 0 1 0 1 chromatin 1 0.500230686004272 1 0.999538627991455 hm5C_site_41133 DeepMRMD:1;iRNA_m5C:0.999538627991455 41134 chr22 40662828 40662828 1 + C T UCEC 40662825 + 40662805 40662845 41 CTGGAGCAGCGGGCCACAGCCTGCAACACCTAAGGATGAGG CTGGAGCAGCGGGCCACAGCCTGTAACACCTAAGGATGAGG < 41bp 1 0.225730839831704 1 0.663787662982941 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40662825 chr22:40662828 nonsynonymous SNV 0.521 0 24 hm5C_associated_SNPs_42023 0 0 1 0 0 Cytosol 1 0.500231643970297 0.672424674034118 0.999536712059405 hm5C_site_41134 DeepMRMD:0.672424674034118;iRNA_m5C:0.999536712059405 41135 chr19 11213371 11213371 1 + C A UCEC 11213368 + 11213348 11213388 41 ACCTGCAAATCCGGGGACTTCAGCTGTGGGGGCCGTGTCAA ACCTGCAAATCCGGGGACTTCAGATGTGGGGGCCGTGTCAA < 41bp 1 0.585493178460516 1 0.816340923309326 experiment 0.829013643078969 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11213368 chr19:11213371 nonsynonymous SNV 0.976 2 24 hm5C_associated_SNPs_42024 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.367318153381348 0.999536712157815 hm5C_site_41135 DeepMRMD:0.367318153381348;iRNA_m5C:0.999536712157815 41136 chr1 235577774 235577774 1 + G A UCEC 235577765 + 235577745 235577785 41 CAGGCACCCGACAGGAGGATCCTTTATTCGTCCGAACAAGG CAGGCACCCGACAGGAGGATCCTTTATTCATCCGAACAAGG < 41bp 1 0.0139723917652393 1 0.0280433297157288 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235577765 chr1:235577774 nonsynonymous SNV 0.746 4 30 hm5C_associated_SNPs_42025 0 0 1 1 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_41136 DeepMRMD:1;iRNA_m5C:0.999536712157816 41137 chr7 16823105 16823105 1 + G A UCEC 16823094 + 16823074 16823114 41 GAACCAGAAAGACCCCCGCGCGAATCCTAGTGCATTCCTTT GAACCAGAAAGACCCCCGCGCGAATCCTAGTACATTCCTTT < 41bp 1 0.168280452118939 1 0.139124095439911 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16823094 chr7:16823105 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_42026 0 0 1 0 1 Ribosome 1 0.500231643995102 1 0.999536712009795 hm5C_site_41137 DeepMRMD:1;iRNA_m5C:0.999536712009795 41138 chr2 39009023 39009023 1 + G T UCEC 39009029 + 39009009 39009049 41 AAGGACATCTTACAGCTTCCCAATGAGAGGCCAGGAAGTGT AAGGACATCTTACATCTTCCCAATGAGAGGCCAGGAAGTGT < 41bp 1 0.23329067025673 1 0.199710130691528 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39009029 chr2:39009023 nonsynonymous SNV 0.998 1 15 hm5C_associated_SNPs_42027 0 0 1 0 0 Ribosome 1 0.500231639638051 1 0.999536720723897 hm5C_site_41138 DeepMRMD:1;iRNA_m5C:0.999536720723897 41139 chr5 140182606 140182606 1 + G A UCEC 140182596 + 140182576 140182616 41 TGCAGACTCAGGCTACAACGCGTGGCTTTCGTATGAGCTGC TGCAGACTCAGGCTACAACGCGTGGCTTTCATATGAGCTGC < 41bp 1 0.502208013300099 1 0.443987011909485 experiment 0.995583973399802 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control PCDHA3 ENSG00000255408 CDS Human protein_coding chr5:140182596 chr5:140182606 synonymous SNV . 0 31 hm5C_associated_SNPs_42028 0 0 0 0 0 insoluble cytoplasm 1 0.500231646749013 1 0.999536706501975 hm5C_site_41139 DeepMRMD:1;iRNA_m5C:0.999536706501975 41140 chr1 183519926 183519926 1 + C T UCEC 183519913 + 183519893 183519933 41 AACACCAGCCAGCCAGTCTCCTCATTCCTCTAACCCAAGCA AACACCAGCCAGCCAGTCTCCTCATTCCTCTAATCCAAGCA < 41bp 1 0.306686711129035 1 0.455041706562042 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519913 chr1:183519926 synonymous SNV . 0 34 hm5C_associated_SNPs_42029 0 0 1 0 1 Cytosol 1 0.500231643921212 1 0.999536712157576 hm5C_site_41140 DeepMRMD:1;iRNA_m5C:0.999536712157576 41141 chr2 74783924 74783924 1 + T C UCEC 74783942 + 74783922 74783962 41 TTTATGATCTGCCTCGGGAGCCCAAGGATGCATGGTGGTGC TTCATGATCTGCCTCGGGAGCCCAAGGATGCATGGTGGTGC < 41bp 1 0.491239312203435 1 0.106898009777069 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOK1 ENSG00000115325 CDS Human protein_coding chr2:74783942 chr2:74783924 nonsynonymous SNV 0.999 3 3 hm5C_associated_SNPs_42030 0 0 1 0 0 Cytosol 1 0.500231567247548 1 0.999536865504905 hm5C_site_41141 DeepMRMD:1;iRNA_m5C:0.999536865504905 41142 chr17 72239559 72239559 1 + C A UCEC 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCATCATTGC < 41bp 1 0.116597926130508 1 0.0719596445560455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239559 nonsynonymous SNV 0.679 2 34 hm5C_associated_SNPs_42031 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_41142 DeepMRMD:1;iRNA_m5C:0.999536712157815 41143 chr16 67572447 67572447 1 + G A UCEC 67572449 + 67572429 67572469 41 TCGGCAGCCACGAGCGGGGGCCCAGGTACGCGGCCGCGCAG TCGGCAGCCACGAGCGGGAGCCCAGGTACGCGGCCGCGCAG < 41bp 1 0.409361740264169 1 0.377862304449081 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572449 chr16:67572447 nonsynonymous SNV 0.997 0 19 hm5C_associated_SNPs_42032 0 0 0 0 1 unknown 1 0.500231689842893 1 0.999536620314215 hm5C_site_41143 DeepMRMD:1;iRNA_m5C:0.999536620314215 41144 chr16 67572447 67572447 1 + G A UCEC 67572450 + 67572430 67572470 41 CGGCAGCCACGAGCGGGGGCCCAGGTACGCGGCCGCGCAGG CGGCAGCCACGAGCGGGAGCCCAGGTACGCGGCCGCGCAGG < 41bp 1 0.540123442799102 1 0.701860427856445 experiment 0.919753114401796 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572450 chr16:67572447 nonsynonymous SNV 0.997 0 18 hm5C_associated_SNPs_42033 0 0 0 0 1 unknown 1 0.500231643921121 0.59627914428711 0.999536712157758 hm5C_site_41144 DeepMRMD:0.59627914428711;iRNA_m5C:0.999536712157758 41145 chr8 17810604 17810604 1 + A C UCEC 17810614 + 17810594 17810634 41 TTTTTAGCAAAATGAGAGTGCTACAGGAAAAGAAACAAAAA TTTTTAGCAACATGAGAGTGCTACAGGAAAAGAAACAAAAA < 41bp 1 0.465870280717853 1 0.460707247257233 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17810614 chr8:17810604 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_42035 0 0 1 0 0 Nucleus 1 0.500193217191896 1 0.999613565616209 hm5C_site_41145 DeepMRMD:1;iRNA_m5C:0.999613565616209 41146 chr15 69738627 69738627 1 + G A UCEC 69738626 + 69738606 69738646 41 GTTTCCCCTTTTTCAGTAGTCGAAAACGAAGATCTTCCACA GTTTCCCCTTTTTCAGTAGTCAAAAACGAAGATCTTCCACA < 41bp 1 0.520385707963465 1 0.807718396186829 experiment 0.959228584073071 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69738626 chr15:69738627 nonsynonymous SNV 0.988 4 22 hm5C_associated_SNPs_42036 0 0 1 0 1 Nucleus 1 0.50023164392009 0.384563207626342 0.999536712159819 hm5C_site_41146 DeepMRMD:0.384563207626342;iRNA_m5C:0.999536712159819 41147 chr4 88989059 88989059 1 + G A UCEC 88989056 + 88989036 88989076 41 CCCTTGTTCTTCAGGAGGACCTGGATTTGGATCACAGTTCT CCCTTGTTCTTCAGGAGGACCTGAATTTGGATCACAGTTCT < 41bp 1 0.638168265355131 1 0.302641242742538 experiment 0.723663469289738 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PKD2 ENSG00000118762 CDS Human protein_coding chr4:88989056 chr4:88989059 nonsynonymous SNV 0.964 2 24 hm5C_associated_SNPs_42037 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_41147 DeepMRMD:1;iRNA_m5C:0.999536712157815 41148 chr1 35824621 35824621 1 + G T UCEC 35824625 + 35824605 35824645 41 AATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATG AATGCCGAATCAAACATGATCTGAAAATTCATTGCTGGATG < 41bp 1 0.528371421014063 1 0.301513999700546 experiment 0.943257157971875 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35824625 chr1:35824621 stopgain 1.000 0 17 hm5C_associated_SNPs_42038 0 0 1 0 0 Cytosol 1 0.500231644639894 1 0.999536710720212 hm5C_site_41148 DeepMRMD:1;iRNA_m5C:0.999536710720212 41149 chr9 35733117 35733117 1 + G A UCEC 35733112 + 35733092 35733132 41 CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT CATGACCACACCTACTCCCTCCCACAGGAAACTGTCTCTAT < 41bp 1 0.100959047556381 1 0.140310704708099 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733112 chr9:35733117 nonsynonymous SNV 0.203 0 26 hm5C_associated_SNPs_42039 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_41149 DeepMRMD:1;iRNA_m5C:0.999536712157815 41150 chr9 35733117 35733117 1 + G A UCEC 35733113 + 35733093 35733133 41 ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG ATGACCACACCTACTCCCTCCCACAGGAAACTGTCTCTATG < 41bp 1 0.232575400944998 1 0.235690295696259 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733113 chr9:35733117 nonsynonymous SNV 0.203 0 25 hm5C_associated_SNPs_42040 0 0 1 0 1 Endoplasmic reticulum 1 0.500231071879525 1 0.999537856240949 hm5C_site_41150 DeepMRMD:1;iRNA_m5C:0.999537856240949 41151 chr14 24773399 24773399 1 + C T UCEC 24773383 + 24773363 24773403 41 GACGGGACCACAGCTTCTGTCCCTTGCCCAAAGTCCCGCTG GACGGGACCACAGCTTCTGTCCCTTGCCCAAAGTCCTGCTG < 41bp 1 0.167831227228237 1 0.0389314293861389 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOP9 ENSG00000196943 CDS Human protein_coding chr14:24773383 chr14:24773399 synonymous SNV . 0 37 hm5C_associated_SNPs_42041 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157817 hm5C_site_41151 DeepMRMD:1;iRNA_m5C:0.999536712157817 41152 chr21 46900433 46900433 1 + G A UCEC 46900416 + 46900396 46900436 41 GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCGGGT GAGGGATCTGGCTTCGGGGGCGATCTGGAGGCCCTGCAGGT < 41bp 1 0.0368815289945855 1 0.143819063901901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900416 chr21:46900433 nonsynonymous SNV 0.181 2 38 hm5C_associated_SNPs_42042 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41152 DeepMRMD:1;iRNA_m5C:0.999536712157815 41153 chr19 50983440 50983440 1 + G A UCEC 50983456 + 50983436 50983476 41 GGAAGCTGGTGGCTATGTCTCCTCCTTTGTCCCTGCGGTGA GGAAACTGGTGGCTATGTCTCCTCCTTTGTCCCTGCGGTGA < 41bp 1 0.123378215376652 1 0.212720781564713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983456 chr19:50983440 nonsynonymous SNV 0.918 0 5 hm5C_associated_SNPs_42043 0 0 1 0 2 Cytosol 1 0.500231725404373 1 0.999536549191255 hm5C_site_41153 DeepMRMD:1;iRNA_m5C:0.999536549191255 41154 chr5 66414532 66414532 1 + C T UCEC 66414552 + 66414532 66414572 41 CGATAGTGGGACAGCAGAAACACCAGAAACAGATGAATCAG TGATAGTGGGACAGCAGAAACACCAGAAACAGATGAATCAG < 41bp 1 0.560637756811065 1 0.802746415138245 experiment 0.87872448637787 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAST4 ENSG00000069020 CDS Human protein_coding chr5:66414552 chr5:66414532 synonymous SNV . 0 1 hm5C_associated_SNPs_42044 0 0 0 0 1 Cytosol 1 0.500231643903736 0.39450716972351 0.999536712192527 hm5C_site_41154 DeepMRMD:0.39450716972351;iRNA_m5C:0.999536712192527 41155 chr10 71016848 71016848 1 + C T UCEC 71016829 + 71016809 71016849 41 GACCAAAGGTTTCAAGGCCACTGACTGTGAAGGGGAGGACG GACCAAAGGTTTCAAGGCCACTGACTGTGAAGGGGAGGATG < 41bp 1 0.310523537485084 1 0.0558207035064697 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71016829 chr10:71016848 synonymous SNV . 0 40 hm5C_associated_SNPs_42045 0 0 0 0 2 Cytosol 1 0.50023166625666 1 0.999536667486681 hm5C_site_41155 DeepMRMD:1;iRNA_m5C:0.999536667486681 41156 chr1 87208029 87208029 1 + C T UCEC 87208023 + 87208003 87208043 41 ATCACCTCTCCTTCCAACCTCAGTGACCTTAAGGAGTGTAG ATCACCTCTCCTTCCAACCTCAGTGATCTTAAGGAGTGTAG < 41bp 1 0.373294765491603 1 0.18396207690239 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87208023 chr1:87208029 synonymous SNV . 0 27 hm5C_associated_SNPs_42046 0 0 1 0 1 Ribosome 1 0.500231643920531 1 0.999536712158939 hm5C_site_41156 DeepMRMD:1;iRNA_m5C:0.999536712158939 41157 chr9 136216875 136216875 1 + T C UCEC 136216860 + 136216840 136216880 41 CCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGTCCCAA CCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGCCCCAA < 41bp 1 0.680333379058468 1 0.422688543796539 experiment 0.639333241883063 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216860 chr9:136216875 nonsynonymous SNV 0.867 0 36 hm5C_associated_SNPs_42048 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41157 DeepMRMD:1;iRNA_m5C:0.999536712157815 41158 chr9 136216875 136216875 1 + T C UCEC 136216873 + 136216853 136216893 41 AAGGCTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACC AAGGCTGCTGGCAAAGGGGACGCCCCAACGAAGAGACCACC < 41bp 1 0.286908548559716 1 0.206764131784439 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216873 chr9:136216875 nonsynonymous SNV 0.867 0 23 hm5C_associated_SNPs_42049 0 0 1 0 1 Cytosol 1 0.500231648626615 1 0.999536702746771 hm5C_site_41158 DeepMRMD:1;iRNA_m5C:0.999536702746771 41159 chr9 136216875 136216875 1 + T C UCEC 136216877 + 136216857 136216897 41 CTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACCTGTC CTGCTGGCAAAGGGGACGCCCCAACGAAGAGACCACCTGTC < 41bp 1 0.161433919928065 1 0.0574875473976135 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL7A ENSG00000148303 CDS Human protein_coding chr9:136216877 chr9:136216875 nonsynonymous SNV 0.867 0 19 hm5C_associated_SNPs_42050 0 0 1 0 1 Cytosol 1 0.500231643921105 1 0.999536712157789 hm5C_site_41159 DeepMRMD:1;iRNA_m5C:0.999536712157789 41160 chr4 79420914 79420914 1 + G A UCEC 79420912 + 79420892 79420932 41 GAAGAAGCTGCATACCAAGTCCGGGAACCCGCAGGCCCAGA GAAGAAGCTGCATACCAAGTCCAGGAACCCGCAGGCCCAGA < 41bp 1 0.141355189047963 1 0.325248271226883 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79420912 chr4:79420914 nonsynonymous SNV 0.982 3 23 hm5C_associated_SNPs_42053 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_41160 DeepMRMD:1;iRNA_m5C:0.999536712157815 41161 chr7 4796680 4796680 1 + C A UCEC 4796673 + 4796653 4796693 41 ACCGTTACTTTATCAAAGTCCCACGTTCCCAGGAGGAGCCT ACCGTTACTTTATCAAAGTCCCACGTTACCAGGAGGAGCCT < 41bp 1 0.0866030051298331 1 0.0443016886711121 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796673 chr7:4796680 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_42054 0 0 1 0 1 Endoplasmic reticulum 1 0.500231642497728 1 0.999536715004544 hm5C_site_41161 DeepMRMD:1;iRNA_m5C:0.999536715004544 41162 chr1 214832259 214832259 1 + G A UCEC 214832258 + 214832238 214832278 41 GAAGAACAACCATGGCAACTCGGACCAGCCCCCGCCTGGCT GAAGAACAACCATGGCAACTCAGACCAGCCCCCGCCTGGCT < 41bp 1 0.282478063784581 1 0.147308707237244 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214832258 chr1:214832259 nonsynonymous SNV 0.746 3 22 hm5C_associated_SNPs_42055 0 0 1 0 0 Nucleus 1 0.500231644024264 1 0.999536711951472 hm5C_site_41162 DeepMRMD:1;iRNA_m5C:0.999536711951472 41163 chr10 131943489 131943489 1 + T C UCEC 131943482 + 131943462 131943502 41 AATTGATTTACAGGTCCCTCCTTGTGGTCCATTTCTGGGCA AATTGATTTACAGGTCCCTCCTTGTGGCCCATTTCTGGGCA < 41bp 1 0.446934074776589 1 0.24248406291008 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131943482 chr10:131943489 nonsynonymous SNV 0.996 1 28 hm5C_associated_SNPs_42056 0 0 1 1 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41163 DeepMRMD:1;iRNA_m5C:0.999536712157815 41164 chr2 85598244 85598244 1 + C T UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTTGCCGCCCTCCGACACTACCTCT < 41bp 1 0.385358254105516 1 0.240454703569412 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598244 synonymous SNV . 0 19 hm5C_associated_SNPs_42057 0 0 0 3 1 Cytosol 1 0.500231643912481 1 0.999536712175038 hm5C_site_41164 DeepMRMD:1;iRNA_m5C:0.999536712175038 41165 chr11 119050796 119050796 1 + G A UCEC 119050815 + 119050795 119050835 41 CGCTTCTCCGCTGAGGTGCTCAGCTCCCTGCGTCAGCTCAA CACTTCTCCGCTGAGGTGCTCAGCTCCCTGCGTCAGCTCAA < 41bp 1 0.284331075645373 1 0.231872856616974 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119050815 chr11:119050796 nonsynonymous SNV 0.998 0 2 hm5C_associated_SNPs_42059 0 0 0 0 0 exosome 1 0.500231647463082 1 0.999536705073837 hm5C_site_41165 DeepMRMD:1;iRNA_m5C:0.999536705073837 41166 chr15 64792165 64792165 1 + C T UCEC 64792174 + 64792154 64792194 41 CAGAAAAGGATCCTGGGGTCCTCCAGCCAGTTCCCTTGGGA CAGAAAAGGATTCTGGGGTCCTCCAGCCAGTTCCCTTGGGA < 41bp 1 0.524303468621048 1 0.862911641597748 experiment 0.951393062757903 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ZNF609 ENSG00000180357 CDS Human protein_coding chr15:64792174 chr15:64792165 nonsynonymous SNV 1.000 0 12 hm5C_associated_SNPs_42060 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164393256 0.274176716804504 0.999536712134879 hm5C_site_41166 DeepMRMD:0.274176716804504;iRNA_m5C:0.999536712134879 41167 chr11 94532779 94532779 1 + G A UCEC 94532760 + 94532740 94532780 41 TGCAGGACCAGCCCATCCTACAAACAACTTTTCTTCCACGG TGCAGGACCAGCCCATCCTACAAACAACTTTTCTTCCACAG < 41bp 1 0.174436297723984 1 0.351614266633987 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94532760 chr11:94532779 synonymous SNV . 0 40 hm5C_associated_SNPs_42061 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41167 DeepMRMD:1;iRNA_m5C:0.999536712157815 41168 chr7 150771236 150771236 1 + C T UCEC 150771233 + 150771213 150771253 41 AGACCCACGCTGGGGCCGGGCAACAGGAGCTTGGCTGGGCA AGACCCACGCTGGGGCCGGGCAATAGGAGCTTGGCTGGGCA < 41bp 1 0.413086310234942 1 0.387870073318481 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150771233 chr7:150771236 synonymous SNV . 0 24 hm5C_associated_SNPs_42062 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_41168 DeepMRMD:1;iRNA_m5C:0.999536712157818 41169 chr1 236711367 236711367 1 + G A UCEC 236711377 + 236711357 236711397 41 GGCGTACACAGCCTGGAGTACAAACACAGATTTAAAGAGCT GGCGTACACAACCTGGAGTACAAACACAGATTTAAAGAGCT < 41bp 1 0.0701361915310231 1 0.14209920167923 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236711377 chr1:236711367 nonsynonymous SNV 0.977 0 11 hm5C_associated_SNPs_42063 0 0 1 0 1 Cytosol 1 0.500231643921077 1 0.999536712157846 hm5C_site_41169 DeepMRMD:1;iRNA_m5C:0.999536712157846 41170 chr6 31605017 31605017 1 + C T UCEC 31605013 + 31604993 31605033 41 ACGCCCTTCTTCCCTTAGGTCCTTCTCTGGCCTCAATTCCC ACGCCCTTCTTCCCTTAGGTCCTTTTCTGGCCTCAATTCCC < 41bp 1 0.101488984524478 1 0.0397774577140808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31605013 chr6:31605017 synonymous SNV . 0 25 hm5C_associated_SNPs_42064 0 0 1 0 2 Ribosome 1 0.500231643975997 1 0.999536712048005 hm5C_site_41170 DeepMRMD:1;iRNA_m5C:0.999536712048005 41171 chr1 198233314 198233314 1 + A G UCEC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTGAAGATAATGAACTGAA < 41bp 1 0.130961369856952 1 0.344748854637146 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233314 synonymous SNV . 0 39 hm5C_associated_SNPs_42065 0 0 1 0 2 Nucleus 1 0.500231643926243 1 0.999536712147515 hm5C_site_41171 DeepMRMD:1;iRNA_m5C:0.999536712147515 41172 chr8 9564450 9564450 1 + C T UCEC 9564436 + 9564416 9564456 41 TAGCCATGGCGCTGATCCTACATTAGTCAACTGCCATGGCA TAGCCATGGCGCTGATCCTACATTAGTCAACTGCTATGGCA < 41bp 1 0.312236174025833 1 0.0221323072910309 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9564436 chr8:9564450 nonsynonymous SNV 0.999 3 35 hm5C_associated_SNPs_42066 0 0 1 0 1 Nucleus 1 0.500231479150889 1 0.999537041698223 hm5C_site_41172 DeepMRMD:1;iRNA_m5C:0.999537041698223 41173 chr1 153724862 153724862 1 + G T UCEC 153724860 + 153724840 153724880 41 AAGATATTATCCATAATCCTCAGGCCTTGAGTCCTCAGTTC AAGATATTATCCATAATCCTCATGCCTTGAGTCCTCAGTTC < 41bp 1 0.411897240699626 1 0.233195573091507 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout INTS3 ENSG00000143624 CDS Human protein_coding chr1:153724860 chr1:153724862 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_42067 0 0 1 0 1 chromatin 1 0.500231643920785 1 0.999536712158429 hm5C_site_41173 DeepMRMD:1;iRNA_m5C:0.999536712158429 41174 chr9 100077141 100077141 1 + C T UCEC 100077158 + 100077138 100077178 41 AAGCGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT AAGTGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT < 41bp 1 0.581019232479822 1 0.487349510192871 experiment 0.837961535040356 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100077158 chr9:100077141 synonymous SNV . 0 4 hm5C_associated_SNPs_42068 0 0 0 2 2 chromatin 1 0.500231640401561 1 0.999536719196877 hm5C_site_41174 DeepMRMD:1;iRNA_m5C:0.999536719196877 41175 chr17 38152551 38152551 1 + G A UCEC 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCACATC < 41bp 1 0.317531055854532 1 0.179141014814377 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152551 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_42070 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41175 DeepMRMD:1;iRNA_m5C:0.999536712157815 41176 chr11 93530713 93530713 1 + A G UCEC 93530714 + 93530694 93530734 41 TTGTTAGTTTCATAAACAGACCTTGAGTTCCATCATGATGC TTGTTAGTTTCATAAACAGGCCTTGAGTTCCATCATGATGC < 41bp 1 0.0249761920021246 1 0.0325663089752197 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED17 ENSG00000042429 CDS Human protein_coding chr11:93530714 chr11:93530713 nonsynonymous SNV 1.000 2 20 hm5C_associated_SNPs_42071 0 0 0 0 1 Cytosol 1 0.500231643908557 1 0.999536712182887 hm5C_site_41176 DeepMRMD:1;iRNA_m5C:0.999536712182887 41177 chr5 176016595 176016595 1 + G A UCEC 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCACCA < 41bp 1 0.535523417364326 1 0.781206130981445 experiment 0.928953165271348 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016595 nonsynonymous SNV 0.036 0 38 hm5C_associated_SNPs_42072 0 0 0 0 2 Exosome 1 0.500231643921036 0.43758773803711 0.999536712157929 hm5C_site_41177 DeepMRMD:0.43758773803711;iRNA_m5C:0.999536712157929 41178 chr17 34001247 34001247 1 + C A UCEC 34001266 + 34001246 34001286 41 ACTCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC AATCACCGCCAAGGGCACATCTATATGGAAATGAACTTCAC < 41bp 1 0.500833985401312 1 0.674835920333862 experiment 0.998332029197375 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:34001266 chr17:34001247 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_42073 0 0 1 0 2 Cytosol 1 0.500231643921105 0.650328159332276 0.99953671215779 hm5C_site_41178 DeepMRMD:0.650328159332276;iRNA_m5C:0.99953671215779 41179 chr11 36422802 36422802 1 + C A UCEC 36422793 + 36422773 36422813 41 CCTTCCCCGATTCCAAGCAGCTCGGCAGGCTCTGCAGCTGA CCTTCCCCGATTCCAAGCAGCTCGGCAGGATCTGCAGCTGA < 41bp 1 0.65036701292971 1 0.364940822124481 experiment 0.69926597414058 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRR5L ENSG00000135362 CDS Human protein_coding chr11:36422793 chr11:36422802 nonsynonymous SNV 0.992 0 30 hm5C_associated_SNPs_42074 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41179 DeepMRMD:1;iRNA_m5C:0.999536712157815 41180 chr16 72139443 72139443 1 + G A UCEC 72139447 + 72139427 72139467 41 CGTTCGGAAGTGCATCGTTGCCACCAATATTGCCGAGACGT CGTTCGGAAGTGCATCATTGCCACCAATATTGCCGAGACGT < 41bp 1 0.0793011361980715 1 0.0600351989269257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139447 chr16:72139443 nonsynonymous SNV 0.988 4 17 hm5C_associated_SNPs_42075 0 0 1 0 2 Cytosol 1 0.500231643953567 1 0.999536712092867 hm5C_site_41180 DeepMRMD:1;iRNA_m5C:0.999536712092867 41181 chr1 87805776 87805776 1 + G A UCEC 87805775 + 87805755 87805795 41 ATCGCCTGGTCCCGGGAGATCGGTTTCACTACATCAATGGC ATCGCCTGGTCCCGGGAGATCAGTTTCACTACATCAATGGC < 41bp 1 0.331178117522185 1 0.287450551986694 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMO4 ENSG00000143013 CDS Human protein_coding chr1:87805775 chr1:87805776 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_42076 0 0 1 0 0 Ribosome 1 0.500231643946281 1 0.999536712107437 hm5C_site_41181 DeepMRMD:1;iRNA_m5C:0.999536712107437 41182 chr17 48757169 48757169 1 + C A UCEC 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTGACATTTGATCTGAACTGGATGATACGAATGATGTC < 41bp 1 0.546051111712174 1 0.321776449680328 experiment 0.907897776575653 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757169 nonsynonymous SNV 0.734 2 14 hm5C_associated_SNPs_42077 0 0 0 0 2 Endoplasmic reticulum 1 0.500236072341238 1 0.999527855317523 hm5C_site_41182 DeepMRMD:1;iRNA_m5C:0.999527855317523 41183 chr16 81077059 81077059 1 + C T UCEC 81077079 + 81077059 81077099 41 CTACAGCCGACTCCTCAGCCCAGCCTGTGGTGTTAGGTGTT TTACAGCCGACTCCTCAGCCCAGCCTGTGGTGTTAGGTGTT < 41bp 1 0.342095815333431 1 0.126244992017746 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATMIN ENSG00000166454 CDS Human protein_coding chr16:81077079 chr16:81077059 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_42078 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41183 DeepMRMD:1;iRNA_m5C:0.999536712157815 41184 chr2 211465341 211465341 1 + G A UCEC 211465360 + 211465340 211465380 41 AGTTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT AATTGAGTCCATTATGGCTACGGAAGACAGGCAGCTGTTTT < 41bp 1 0.497363331960359 1 0.740393996238708 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPS1 ENSG00000021826 CDS Human protein_coding chr2:211465360 chr2:211465341 nonsynonymous SNV 0.997 2 2 hm5C_associated_SNPs_42079 0 0 1 0 2 Nucleus 1 0.500231643921094 0.519212007522584 0.999536712157812 hm5C_site_41184 DeepMRMD:0.519212007522584;iRNA_m5C:0.999536712157812 41185 chr17 46128902 46128902 1 + G A UCEC 46128901 + 46128881 46128921 41 CAGGCCCAGACAACGGGGTGCGAGAAAGCGAAACGGAGCAG CAGGCCCAGACAACGGGGTGCAAGAAAGCGAAACGGAGCAG < 41bp 1 0.629864108086518 1 0.233622461557388 experiment 0.740271783826965 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128901 chr17:46128902 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_42080 0 0 1 0 1 Ribosome 1 0.500231643917488 1 0.999536712165024 hm5C_site_41185 DeepMRMD:1;iRNA_m5C:0.999536712165024 41186 chr17 46128902 46128902 1 + G A UCEC 46128914 + 46128894 46128934 41 CGGGGTGCGAGAAAGCGAAACGGAGCAGGGATTCGGTGAAG CGGGGTGCAAGAAAGCGAAACGGAGCAGGGATTCGGTGAAG < 41bp 1 0.584166687573062 1 0.834227681159973 experiment 0.831666624853876 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128914 chr17:46128902 nonsynonymous SNV 0.998 2 9 hm5C_associated_SNPs_42082 0 0 1 0 1 Ribosome 1 0.500231584597059 0.331544637680054 0.999536830805882 hm5C_site_41186 DeepMRMD:0.331544637680054;iRNA_m5C:0.999536830805882 41187 chr17 46128902 46128902 1 + G A UCEC 46128919 + 46128899 46128939 41 TGCGAGAAAGCGAAACGGAGCAGGGATTCGGTGAAGATTTG TGCAAGAAAGCGAAACGGAGCAGGGATTCGGTGAAGATTTG < 41bp 1 0.643970028982942 1 0.67047107219696 experiment 0.712059942034117 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128919 chr17:46128902 nonsynonymous SNV 0.998 2 4 hm5C_associated_SNPs_42083 0 0 1 0 1 Ribosome 1 0.500231643921092 0.65905785560608 0.999536712157816 hm5C_site_41187 DeepMRMD:0.65905785560608;iRNA_m5C:0.999536712157816 41188 chr9 98678707 98678707 1 + G A UCEC 98678714 + 98678694 98678734 41 AGTTGCCTAAGAAGGAAGACCGGGTAAGAACCGCATTTGTA AGTTGCCTAAGAAAGAAGACCGGGTAAGAACCGCATTTGTA < 41bp 1 0.445240662383589 1 0.51391077041626 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98678714 chr9:98678707 synonymous SNV . 0 14 hm5C_associated_SNPs_42084 0 0 0 0 1 Nucleus 1 0.500231643936704 0.97217845916748 0.999536712126593 hm5C_site_41188 DeepMRMD:0.97217845916748;iRNA_m5C:0.999536712126593 41189 chr11 43908165 43908165 1 + T C UCEC 43908156 + 43908136 43908176 41 TGTTTCCTTTGTTTCTTTAGCAGAGAGGGTGTGTATGAAAT TGTTTCCTTTGTTTCTTTAGCAGAGAGGGCGTGTATGAAAT < 41bp 1 0.50025803279165 1 0.545542895793915 experiment 0.9994839344167 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43908156 chr11:43908165 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_42085 0 0 1 4 3 Ribosome 1 0.500231687174931 0.90891420841217 0.999536625650137 hm5C_site_41189 DeepMRMD:0.90891420841217;iRNA_m5C:0.999536625650137 41190 chr5 153709246 153709246 1 + G A UCEC 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTGTGCTCAATCGCTCACCTCCAGAGCTGGTCGCCGAGA < 41bp 1 0.698260259737196 1 0.929033577442169 experiment 0.603479480525608 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709246 synonymous SNV . 0 19 hm5C_associated_SNPs_42086 0 0 0 0 1 Ribosome 1 0.500115935239033 0.141932845115662 0.999768129521935 hm5C_site_41190 DeepMRMD:0.141932845115662;iRNA_m5C:0.999768129521935 41191 chr5 169127061 169127061 1 + G T UCEC 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGGTGGGTGACATCATTCATATTCGCAAGGACTATCCA < 41bp 1 0.18164363951445 1 0.107817590236664 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127061 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_42087 0 0 1 0 2 Cytosol 1 0.500231643921728 1 0.999536712156543 hm5C_site_41191 DeepMRMD:1;iRNA_m5C:0.999536712156543 41192 chr18 21478721 21478721 1 + G A UCEC 21478705 + 21478685 21478725 41 TTGTGTTTTGTTTCCAGAATCAGTTGCTCAACTACCGTTCT TTGTGTTTTGTTTCCAGAATCAGTTGCTCAACTACCATTCT < 41bp 1 0.0518885040627943 1 0.153181672096252 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21478705 chr18:21478721 nonsynonymous SNV 0.904 0 37 hm5C_associated_SNPs_42088 0 0 0 0 2 Cytosol 1 0.500231640548111 1 0.999536718903778 hm5C_site_41192 DeepMRMD:1;iRNA_m5C:0.999536718903778 41193 chr17 37360824 37360824 1 + C T UCEC 37360807 + 37360787 37360827 41 TGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCC TGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGCAAGTGCC < 41bp 1 0.481947688967141 1 0.528961181640625 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360807 chr17:37360824 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_42089 0 0 1 0 1 chromatin 1 0.500231643936506 0.94207763671875 0.999536712126988 hm5C_site_41193 DeepMRMD:0.94207763671875;iRNA_m5C:0.999536712126988 Intelligence (MTAG) 41194 chr17 37360824 37360824 1 + C T UCEC 37360816 + 37360796 37360836 41 CAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGC CAGGTCTAAGACCAAGGAAGCACGCAAGTGCCGTGAAGAGC < 41bp 1 0.416736895477475 1 0.174070477485657 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360816 chr17:37360824 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_42091 0 0 1 0 1 chromatin 1 0.500233364119842 1 0.999533271760316 hm5C_site_41194 DeepMRMD:1;iRNA_m5C:0.999533271760316 41195 chr12 27835610 27835610 1 + G T UCEC 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATTGTCGAATGCTACATTACATGACTGTTGTAAGT < 41bp 1 0.185580571078787 1 0.222742825746536 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835610 nonsynonymous SNV 0.993 3 9 hm5C_associated_SNPs_42093 0 0 1 0 2 Nucleus 1 0.500231643918419 1 0.999536712163163 hm5C_site_41195 DeepMRMD:1;iRNA_m5C:0.999536712163163 41196 chr10 5147789 5147789 1 + T G UCEC 5147798 + 5147778 5147818 41 TTCTGATAGGTTTTTGAGTTCCAGTTGACTGCAGAGGACAT TTCTGATAGGTGTTTGAGTTCCAGTTGACTGCAGAGGACAT < 41bp 1 0.228266109220342 1 0.146257400512695 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AKR1C3 ENSG00000196139 CDS Human protein_coding chr10:5147798 chr10:5147789 synonymous SNV . 0 12 hm5C_associated_SNPs_42094 0 0 1 0 2 Ribosome 1 0.500232621669817 1 0.999534756660367 hm5C_site_41196 DeepMRMD:1;iRNA_m5C:0.999534756660367 41197 chr11 110333083 110333083 1 + G A UCEC 110333093 + 110333073 110333113 41 TACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATC TACAGATCACAGTTGGGCTGCCAAATCTGTTTGACAAAATC < 41bp 1 0.177528576013938 1 0.153972715139389 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333093 chr11:110333083 nonsynonymous SNV 0.897 3 11 hm5C_associated_SNPs_42095 0 0 1 0 1 Cytosol 1 0.500231687616663 1 0.999536624766674 hm5C_site_41197 DeepMRMD:1;iRNA_m5C:0.999536624766674 41198 chr11 110333083 110333083 1 + G A UCEC 110333094 + 110333074 110333114 41 ACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATCT ACAGATCACAGTTGGGCTGCCAAATCTGTTTGACAAAATCT < 41bp 1 0.191054596365523 1 0.43353483080864 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333094 chr11:110333083 nonsynonymous SNV 0.897 3 10 hm5C_associated_SNPs_42096 0 0 1 0 1 Cytosol 1 0.500231628490742 1 0.999536743018515 hm5C_site_41198 DeepMRMD:1;iRNA_m5C:0.999536743018515 41199 chr11 124747879 124747879 1 + C T UCEC 124747866 + 124747846 124747886 41 CCTGTATCTAGCTCAGACGGCCAGGGGCACGGCCGCCCCTG CCTGTATCTAGCTCAGACGGCCAGGGGCACGGCTGCCCCTG < 41bp 1 0.429550755656352 1 0.834459781646729 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747866 chr11:124747879 synonymous SNV . 0 34 hm5C_associated_SNPs_42097 0 0 0 0 1 exosome 1 0.500231643921092 0.331080436706542 0.999536712157815 hm5C_site_41199 DeepMRMD:0.331080436706542;iRNA_m5C:0.999536712157815 41200 chr11 124747879 124747879 1 + C T UCEC 124747867 + 124747847 124747887 41 CTGTATCTAGCTCAGACGGCCAGGGGCACGGCCGCCCCTGG CTGTATCTAGCTCAGACGGCCAGGGGCACGGCTGCCCCTGG < 41bp 1 0.681095330639162 1 0.950021505355835 experiment 0.637809338721677 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747867 chr11:124747879 synonymous SNV . 0 33 hm5C_associated_SNPs_42098 0 0 0 0 1 exosome 1 0.500231643921092 0.0999569892883301 0.999536712157815 hm5C_site_41200 DeepMRMD:0.0999569892883301;iRNA_m5C:0.999536712157815 41201 chr11 124747879 124747879 1 + C T UCEC 124747881 + 124747861 124747901 41 GACGGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCT GACGGCCAGGGGCACGGCTGCCCCTGGCGAGGGTCCTGTCT < 41bp 1 0.164438038781198 1 0.110223203897476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747881 chr11:124747879 synonymous SNV . 0 19 hm5C_associated_SNPs_42100 0 0 0 0 1 exosome 1 0.500231643903565 1 0.99953671219287 hm5C_site_41201 DeepMRMD:1;iRNA_m5C:0.99953671219287 41202 chr11 124747879 124747879 1 + C T UCEC 124747882 + 124747862 124747902 41 ACGGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTA ACGGCCAGGGGCACGGCTGCCCCTGGCGAGGGTCCTGTCTA < 41bp 1 0.251643555282509 1 0.09859699010849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747882 chr11:124747879 synonymous SNV . 0 18 hm5C_associated_SNPs_42101 0 0 0 0 1 exosome 1 0.500231643919797 1 0.999536712160405 hm5C_site_41202 DeepMRMD:1;iRNA_m5C:0.999536712160405 41203 chr11 124747879 124747879 1 + C T UCEC 124747883 + 124747863 124747903 41 CGGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTAT CGGCCAGGGGCACGGCTGCCCCTGGCGAGGGTCCTGTCTAT < 41bp 1 0.282122859826565 1 0.340583354234695 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747883 chr11:124747879 synonymous SNV . 0 17 hm5C_associated_SNPs_42102 0 0 0 0 1 exosome 1 0.500231643859746 1 0.999536712280507 hm5C_site_41203 DeepMRMD:1;iRNA_m5C:0.999536712280507 41204 chr11 124747879 124747879 1 + C T UCEC 124747884 + 124747864 124747904 41 GGCCAGGGGCACGGCCGCCCCTGGCGAGGGTCCTGTCTATA GGCCAGGGGCACGGCTGCCCCTGGCGAGGGTCCTGTCTATA < 41bp 1 0.630282698513484 1 0.294700592756271 experiment 0.739434602973033 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747884 chr11:124747879 synonymous SNV . 0 16 hm5C_associated_SNPs_42103 0 0 0 0 1 exosome 1 0.500231643922006 1 0.999536712155988 hm5C_site_41204 DeepMRMD:1;iRNA_m5C:0.999536712155988 41205 chr15 41555005 41555005 1 + C T UCEC 41554985 + 41554965 41555005 41 TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGC TAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGT < 41bp 1 0.237579278366877 1 0.166997134685516 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHP1 ENSG00000187446 CDS Human protein_coding chr15:41554985 chr15:41555005 synonymous SNV . 0 41 hm5C_associated_SNPs_42104 0 0 1 0 2 Ribosome 1 0.500231739945611 1 0.999536520108778 hm5C_site_41205 DeepMRMD:1;iRNA_m5C:0.999536520108778 41206 chr3 47891215 47891215 1 + C T UCEC 47891200 + 47891180 47891220 41 CAGCGTCTTCGTCCGGGACTCCTCTCAGGTGCACCCGCTAG CAGCGTCTTCGTCCGGGACTCCTCTCAGGTGCACCTGCTAG < 41bp 1 0.0888043384912913 1 0.184582769870758 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47891200 chr3:47891215 nonsynonymous SNV 0.986 4 36 hm5C_associated_SNPs_42105 0 0 1 0 1 Cytosol 1 0.500231644126998 1 0.999536711746005 hm5C_site_41206 DeepMRMD:1;iRNA_m5C:0.999536711746005 41207 chr12 104327990 104327990 1 + G A UCEC 104327970 + 104327950 104327990 41 ATTGTCACTTCAAAACACAACAACGATACCCAGCACATCTG ATTGTCACTTCAAAACACAACAACGATACCCAGCACATCTA < 41bp 1 0.468476355022858 1 0.136727899312973 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104327970 chr12:104327990 stopgain 1.000 1 41 hm5C_associated_SNPs_42106 0 0 1 0 1 Nucleus 1 0.50023458234387 1 0.999530835312261 hm5C_site_41207 DeepMRMD:1;iRNA_m5C:0.999530835312261 41208 chr16 30750666 30750666 1 + G A UCEC 30750662 + 30750642 30750682 41 TGGACTTAGCAGATAGCGGGCCAGGCGGGTTGGAATTGACA TGGACTTAGCAGATAGCGGGCCAGACGGGTTGGAATTGACA < 41bp 1 0.24295791499758 1 0.10236868262291 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30750662 chr16:30750666 nonsynonymous SNV 0.814 2 25 hm5C_associated_SNPs_42107 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_41208 DeepMRMD:1;iRNA_m5C:0.999536712157815 41209 chr16 30750666 30750666 1 + G A UCEC 30750663 + 30750643 30750683 41 GGACTTAGCAGATAGCGGGCCAGGCGGGTTGGAATTGACAC GGACTTAGCAGATAGCGGGCCAGACGGGTTGGAATTGACAC < 41bp 1 0.224144776857976 1 0.144154459238052 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30750663 chr16:30750666 nonsynonymous SNV 0.814 2 24 hm5C_associated_SNPs_42108 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41209 DeepMRMD:1;iRNA_m5C:0.999536712157815 41210 chr19 59060603 59060603 1 + T C UCEC 59060584 + 59060564 59060604 41 GAACCCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGTC GAACCCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGCC < 41bp 1 0.472618400089445 1 0.488364338874817 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060584 chr19:59060603 nonsynonymous SNV 0.981 1 40 hm5C_associated_SNPs_42109 0 0 1 0 1 Cytosol 1 0.500231504503895 1 0.999536990992211 hm5C_site_41210 DeepMRMD:1;iRNA_m5C:0.999536990992211 41211 chr19 59060603 59060603 1 + T C UCEC 59060588 + 59060568 59060608 41 CCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGTCAAGG CCCTGGTGCCCCACCCCTGGCTGGCATGGCCATTGCCAAGG < 41bp 1 0.508408295488755 1 0.0379734635353088 experiment 0.983183409022491 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060588 chr19:59060603 nonsynonymous SNV 0.981 1 36 hm5C_associated_SNPs_42110 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41211 DeepMRMD:1;iRNA_m5C:0.999536712157815 41212 chr19 59060603 59060603 1 + T C UCEC 59060592 + 59060572 59060612 41 GGTGCCCCACCCCTGGCTGGCATGGCCATTGTCAAGGTAAG GGTGCCCCACCCCTGGCTGGCATGGCCATTGCCAAGGTAAG < 41bp 1 0.163876698234841 1 0.115292102098465 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060592 chr19:59060603 nonsynonymous SNV 0.981 1 32 hm5C_associated_SNPs_42111 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41212 DeepMRMD:1;iRNA_m5C:0.999536712157815 41213 chr19 7620632 7620632 1 + G A UCEC 7620645 + 7620625 7620665 41 GCAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA GCAGCGGACCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGA < 41bp 1 0.239650591445894 1 0.412064582109451 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620645 chr19:7620632 nonsynonymous SNV 0.995 1 8 hm5C_associated_SNPs_42112 0 0 1 0 1 Ribosome 1 0.500237319392227 1 0.999525361215545 hm5C_site_41213 DeepMRMD:1;iRNA_m5C:0.999525361215545 41214 chr19 7620632 7620632 1 + G A UCEC 7620646 + 7620626 7620666 41 CAGCGGGCCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG CAGCGGACCCGGGAGTGGGCCAAGGTGTGTGTTGCGAGGAG < 41bp 1 0.486198993263917 1 0.721481084823608 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7620646 chr19:7620632 nonsynonymous SNV 0.995 1 7 hm5C_associated_SNPs_42113 0 0 1 0 1 Ribosome 1 0.500231643921092 0.557037830352784 0.999536712157815 hm5C_site_41214 DeepMRMD:0.557037830352784;iRNA_m5C:0.999536712157815 41215 chrX 17705968 17705968 1 + G T UCEC 17705955 + 17705935 17705975 41 CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGC CTTCCTCCCAGCCACAAGGCCACCCTGCGTGGATGAGCTGC < 41bp 1 0.351147361391508 1 0.0664248466491699 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NHS ENSG00000188158 CDS Human protein_coding chrX:17705955 chrX:17705968 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_42114 0 0 0 0 1 nucleus 1 0.500231643894402 1 0.999536712211196 hm5C_site_41215 DeepMRMD:1;iRNA_m5C:0.999536712211196 41216 chrX 135593004 135593004 1 + G T UCEC 135593020 + 135593000 135593040 41 CTGAGAGGATGGGAGGCTTTCCTCAATGCTCCTGAGGCCAA CTGATAGGATGGGAGGCTTTCCTCAATGCTCCTGAGGCCAA < 41bp 1 0.486245514706849 1 0.384057372808456 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593020 chrX:135593004 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_42116 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41216 DeepMRMD:1;iRNA_m5C:0.999536712157815 41217 chr6 44116555 44116555 1 + T G UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCAGC < 41bp 1 0.0932623862785064 1 0.484518468379974 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116555 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_42117 0 0 1 3 1 Ribosome 1 0.500224415913801 1 0.999551168172398 hm5C_site_41217 DeepMRMD:1;iRNA_m5C:0.999551168172398 41218 chr2 220072116 220072116 1 + G A UCEC 220072099 + 220072079 220072119 41 CAGGCATCTTCTGCGCAGACCATGTGGCCTACGCCCAGCAT CAGGCATCTTCTGCGCAGACCATGTGGCCTACGCCCAACAT < 41bp 1 0.336562606311716 1 0.123378992080688 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220072099 chr2:220072116 synonymous SNV . 0 38 hm5C_associated_SNPs_42118 0 0 1 0 2 Ribosome 1 0.500231643951795 1 0.999536712096409 hm5C_site_41218 DeepMRMD:1;iRNA_m5C:0.999536712096409 41219 chr14 94512160 94512160 1 + G A UCEC 94512166 + 94512146 94512186 41 TACGTGGACGAGATGGATACCGCCCTGAACCACCACGTGTT TACGTGGACGAGATAGATACCGCCCTGAACCACCACGTGTT < 41bp 1 0.503458391080102 1 0.218442350625992 experiment 0.993083217839796 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUB2 ENSG00000089723 CDS Human protein_coding chr14:94512166 chr14:94512160 nonsynonymous SNV 0.991 1 15 hm5C_associated_SNPs_42119 0 0 0 0 1 exosome 1 0.500231643922359 1 0.999536712155283 hm5C_site_41219 DeepMRMD:1;iRNA_m5C:0.999536712155283 41220 chr15 44085917 44085917 1 + G T UCEC 44085898 + 44085878 44085918 41 CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGA CTCCCAGTGCCCCATCATCTCTACCCCCAGGGACTCGGATA < 41bp 1 0.297185258061274 1 0.0395390093326569 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085898 chr15:44085917 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_42120 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41220 DeepMRMD:1;iRNA_m5C:0.999536712157815 41221 chr15 44085917 44085917 1 + G T UCEC 44085902 + 44085882 44085922 41 CAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGATCAT CAGTGCCCCATCATCTCTACCCCCAGGGACTCGGATATCAT < 41bp 1 0.295758904939107 1 0.0997720658779144 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085902 chr15:44085917 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_42121 0 0 1 0 2 Cytosol 1 0.500231643786444 1 0.999536712427112 hm5C_site_41221 DeepMRMD:1;iRNA_m5C:0.999536712427112 41222 chr4 128811314 128811314 1 + C T UCEC 128811297 + 128811277 128811317 41 GACTAGGGGTATGGAGCCACCATGGGGTTATCAGAATCGTA GACTAGGGGTATGGAGCCACCATGGGGTTATCAGAATTGTA < 41bp 1 0.625036591997679 1 0.273236632347107 experiment 0.749926816004641 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLK4 ENSG00000142731 CDS Human protein_coding chr4:128811297 chr4:128811314 nonsynonymous SNV 0.938 0 38 hm5C_associated_SNPs_42122 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41222 DeepMRMD:1;iRNA_m5C:0.999536712157815 41223 chr17 46128610 46128610 1 + C A UCEC 46128592 + 46128572 46128612 41 ACCTGACCTCACAGCTTCCCCCACTCCGGGAGATCATCCTG ACCTGACCTCACAGCTTCCCCCACTCCGGGAGATCATCATG < 41bp 1 0.113549552716603 1 0.0631169080734253 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128592 chr17:46128610 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_42123 0 0 1 0 0 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_41223 DeepMRMD:1;iRNA_m5C:0.999536712157818 41224 chr19 15222219 15222219 1 + G T UCEC 15222222 + 15222202 15222242 41 GCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGT GCGGTCTGCCTATCTGATGACCTGTACCCCGATATCAATGT < 41bp 1 0.0750753270154737 1 0.0182059109210968 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222222 chr19:15222219 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_42124 0 0 0 0 2 exosome 1 0.500231668232669 1 0.999536663534661 hm5C_site_41224 DeepMRMD:1;iRNA_m5C:0.999536663534661 41225 chr2 113325662 113325662 1 + C A UCEC 113325644 + 113325624 113325664 41 ATTGTTCCTTTTTACCACTCCTTGTAGACTGGTACGGCCTG ATTGTTCCTTTTTACCACTCCTTGTAGACTGGTACGGCATG < 41bp 1 0.155910605197326 1 0.117488980293274 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113325644 chr2:113325662 nonsynonymous SNV 0.997 5 39 hm5C_associated_SNPs_42125 0 0 1 0 1 Nucleus 1 0.500231644582236 1 0.999536710835528 hm5C_site_41225 DeepMRMD:1;iRNA_m5C:0.999536710835528 41226 chr16 72139465 72139465 1 + C T UCEC 72139447 + 72139427 72139467 41 CGTTCGGAAGTGCATCGTTGCCACCAATATTGCCGAGACGT CGTTCGGAAGTGCATCGTTGCCACCAATATTGCCGAGATGT < 41bp 1 0.0571973127763596 1 0.0538067519664764 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139447 chr16:72139465 nonsynonymous SNV 0.972 4 39 hm5C_associated_SNPs_42126 0 0 1 0 2 Cytosol 1 0.50023164558467 1 0.999536708830659 hm5C_site_41226 DeepMRMD:1;iRNA_m5C:0.999536708830659 41227 chr1 10239548 10239548 1 + C A UCEC 10239562 + 10239542 10239582 41 ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCCCTT ATCATCATGCGGCACCTGCTCAACTCCCCCACGGACCCCTT < 41bp 1 0.491366156981004 1 0.342719674110413 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10239562 chr1:10239548 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_42127 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41227 DeepMRMD:1;iRNA_m5C:0.999536712157815 41228 chr14 24707709 24707709 1 + C T UCEC 24707716 + 24707696 24707736 41 AAGCATGGTGAACCGGGGCTCAATGCTAGGGTCTGTGGAAA AAGCATGGTGAACTGGGGCTCAATGCTAGGGTCTGTGGAAA < 41bp 1 0.477635243766208 1 0.307214558124542 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GMPR2 ENSG00000100938 CDS Human protein_coding chr14:24707716 chr14:24707709 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_42128 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41228 DeepMRMD:1;iRNA_m5C:0.999536712157815 41229 chr10 75526829 75526829 1 + G A UCEC 75526835 + 75526815 75526855 41 GCTGAGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCCT GCTGAGTGTGCAGGAAAGCTCTTTCTATTCCATACATCCCT < 41bp 1 0.116424123438721 1 0.0887628495693207 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526835 chr10:75526829 synonymous SNV . 0 15 hm5C_associated_SNPs_42129 0 0 1 0 2 Nucleus 1 0.500231631852894 1 0.999536736294211 hm5C_site_41229 DeepMRMD:1;iRNA_m5C:0.999536736294211 41230 chr10 75526829 75526829 1 + G A UCEC 75526839 + 75526819 75526859 41 AGTGTGCAGGGAAGCTCTTTCTATTCCATACATCCCTGCCC AGTGTGCAGGAAAGCTCTTTCTATTCCATACATCCCTGCCC < 41bp 1 0.308136071381884 1 0.18769234418869 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75526839 chr10:75526829 synonymous SNV . 0 11 hm5C_associated_SNPs_42130 0 0 1 0 2 Nucleus 1 0.500231643863777 1 0.999536712272446 hm5C_site_41230 DeepMRMD:1;iRNA_m5C:0.999536712272446 41231 chr5 33461363 33461363 1 + T G UCEC 33461353 + 33461333 33461373 41 AACTAAACCTTTCTACTCGCCCGGAAAAATTCCTTGGAGAT AACTAAACCTTTCTACTCGCCCGGAAAAATGCCTTGGAGAT < 41bp 1 0.455416220631318 1 0.199837535619736 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33461353 chr5:33461363 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_42131 0 0 1 0 1 Nucleus 1 0.500231636943748 1 0.999536726112504 hm5C_site_41231 DeepMRMD:1;iRNA_m5C:0.999536726112504 41232 chr6 25450209 25450209 1 + A G UCEC 25450192 + 25450172 25450212 41 AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGAGCA AGTCTCCAGGCGCTGTGGGACAGCCAGACCGTGGCTGGGCA < 41bp 1 0.452861048695046 1 0.423143029212952 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25450192 chr6:25450209 nonsynonymous SNV 0.994 2 38 hm5C_associated_SNPs_42132 0 0 0 0 2 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_41232 DeepMRMD:1;iRNA_m5C:0.999536712157815 41233 chrX 48564769 48564769 1 + C T UCEC 48564763 + 48564743 48564783 41 GACGTGTACACCGTGGATGCCGCCTACTATGGCAACATCTC GACGTGTACACCGTGGATGCCGCCTATTATGGCAACATCTC < 41bp 1 0.335490720848188 1 0.20716181397438 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564763 chrX:48564769 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_42133 0 0 1 1 0 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_41233 DeepMRMD:1;iRNA_m5C:0.999536712157817 41234 chr11 65269085 65269085 1 + A G UCEC 65269082 + 65269062 65269102 41 AGATGCTATAGTACTATTGACAAACTGGGTTAGAGAAGGAG AGATGCTATAGTACTATTGACAAGCTGGGTTAGAGAAGGAG < 41bp 1 0.284728169193814 1 0.38245415687561 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269082 chr11:65269085 . . 0 24 hm5C_associated_SNPs_42134 0 0 1 2 0 unknown 1 0.500231643920909 1 0.999536712158183 hm5C_site_41234 DeepMRMD:1;iRNA_m5C:0.999536712158183 41235 chr10 24816977 24816977 1 + A C UCEC 24816988 + 24816968 24817008 41 CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTG CAATACCAACTCTGGAGATGCCGCCAGCCACAGGCCCACTG < 41bp 1 0.170102322113653 1 0.212923467159271 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816988 chr10:24816977 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_42136 0 0 1 0 1 Nucleus 1 0.500231958134521 1 0.999536083730957 hm5C_site_41235 DeepMRMD:1;iRNA_m5C:0.999536083730957 41236 chr10 24816977 24816977 1 + A C UCEC 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAACTCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA < 41bp 1 0.21599866929249 1 0.770004034042358 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24816977 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_42137 0 0 1 0 1 Nucleus 1 0.500231643921021 0.459991931915284 0.999536712157959 hm5C_site_41236 DeepMRMD:0.459991931915284;iRNA_m5C:0.999536712157959 41237 chr4 144390265 144390265 1 + C A UCEC 144390263 + 144390243 144390283 41 TGACCAACAGAAGACCTTGGCTCTAAAGAGTACCCGGGAAG TGACCAACAGAAGACCTTGGCTATAAAGAGTACCCGGGAAG < 41bp 1 0.512501762267829 1 0.298177152872086 experiment 0.974996475464342 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144390263 chr4:144390265 nonsynonymous SNV 0.953 4 23 hm5C_associated_SNPs_42138 0 0 0 0 1 chromatin 1 0.500231643977914 1 0.999536712044172 hm5C_site_41237 DeepMRMD:1;iRNA_m5C:0.999536712044172 41238 chr6 25551242 25551242 1 + T G UCEC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAAGACTTGATTCATGCCAGCACCGAAAAGATGTCTAT < 41bp 1 0.476167365694042 1 0.42942225933075 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551242 nonsynonymous SNV 0.997 1 36 hm5C_associated_SNPs_42139 0 0 0 0 1 unknown 1 0.500231636369527 1 0.999536727260946 hm5C_site_41238 DeepMRMD:1;iRNA_m5C:0.999536727260946 41239 chrX 73042696 73042696 1 + G A UCEC 73042691 - 73042671 73042711 41 TAGCTGTGATATGTTCGATACTAAGGAAAAACTAAACAGAT TAGCTGTGATATGTTTGATACTAAGGAAAAACTAAACAGAT < 41bp 1 0.176961722285014 1 0.430322498083115 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042691 chrX:73042696 . . 0 16 hm5C_associated_SNPs_42140 0 0 1 0 0 unknown 1 0.500232443178504 1 0.999535113642991 hm5C_site_41239 DeepMRMD:1;iRNA_m5C:0.999535113642991 41240 chr5 162905764 162905764 1 + G A UCEC 162905772 + 162905752 162905792 41 AAAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT AAAAGTATGACAATATGGTGCAAAGCCTTGAAGATGTTACT < 41bp 1 0.259690932598672 1 0.175862610340118 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162905772 chr5:162905764 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_42141 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41240 DeepMRMD:1;iRNA_m5C:0.999536712157815 41241 chr11 120957738 120957738 1 + C A UCEC 120957753 + 120957733 120957773 41 CAGCTCTCGGGCATTGCATTCCTTTGGCATTAGGGATGGAG CAGCTATCGGGCATTGCATTCCTTTGGCATTAGGGATGGAG < 41bp 1 0.034473216595676 1 0.0714091956615448 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBCEL ENSG00000154114 CDS Human protein_coding chr11:120957753 chr11:120957738 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_42142 0 0 1 1 0 Ribosome 1 0.500231643921101 1 0.999536712157798 hm5C_site_41241 DeepMRMD:1;iRNA_m5C:0.999536712157798 41242 chr4 57891057 57891057 1 + G A UCEC 57891056 + 57891036 57891076 41 CTTTTTTTTTTAAAAGGTATCGGCTAACAAGGGTGAAATTG CTTTTTTTTTTAAAAGGTATCAGCTAACAAGGGTGAAATTG < 41bp 1 0.347661779312392 1 0.350962907075882 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57891056 chr4:57891057 synonymous SNV . 0 22 hm5C_associated_SNPs_42143 0 0 0 0 1 Nucleus 1 0.500232732001366 1 0.999534535997269 hm5C_site_41242 DeepMRMD:1;iRNA_m5C:0.999534535997269 41243 chr2 178378625 178378625 1 + T G UCEC 178378621 + 178378601 178378641 41 GAAGGGTGTTCAGTTTGCTCCTTTTTCTACATGCAGGTAAG GAAGGGTGTTCAGTTTGCTCCTTTGTCTACATGCAGGTAAG < 41bp 1 0.064305005051175 1 0.128764569759369 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGPS ENSG00000018510 CDS Human protein_coding chr2:178378621 chr2:178378625 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_42144 0 0 1 0 1 Nucleus 1 0.5002315165069 1 0.9995369669862 hm5C_site_41243 DeepMRMD:1;iRNA_m5C:0.9995369669862 41244 chr17 41345581 41345581 1 + G A UCEC 41345576 + 41345556 41345596 41 TATCATAGTAGATCCTTTCCCCTCCGAAGAGAGCCCTGATA TATCATAGTAGATCCTTTCCCCTCCAAAGAGAGCCCTGATA < 41bp 1 0.110479846518467 1 0.242188572883606 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41345576 chr17:41345581 nonsynonymous SNV 0.126 0 26 hm5C_associated_SNPs_42145 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41244 DeepMRMD:1;iRNA_m5C:0.999536712157815 41245 chr6 7583144 7583144 1 + G A UCEC 7583125 + 7583105 7583145 41 ATATTCCCGCAAGGAGGAGGCTATTAGGAAGATAGAATCGG ATATTCCCGCAAGGAGGAGGCTATTAGGAAGATAGAATCAG < 41bp 1 0.0758096059848911 1 0.117117673158646 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7583125 chr6:7583144 synonymous SNV . 0 40 hm5C_associated_SNPs_42146 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41245 DeepMRMD:1;iRNA_m5C:0.999536712157815 41246 chr6 151671187 151671187 1 + C A UCEC 151671207 + 151671187 151671227 41 CTCCGGACAGCCAGGAGGAGCAAAAGGGCGAGAGCTCTGCC ATCCGGACAGCCAGGAGGAGCAAAAGGGCGAGAGCTCTGCC < 41bp 1 0.636183735369522 1 0.721081018447876 experiment 0.727632529260956 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151671207 chr6:151671187 nonsynonymous SNV 0.140 3 1 hm5C_associated_SNPs_42147 0 0 1 0 0 Ribosome 1 0.500231643921092 0.557837963104248 0.999536712157815 hm5C_site_41246 DeepMRMD:0.557837963104248;iRNA_m5C:0.999536712157815 41247 chr19 16962315 16962315 1 + G A UCEC 16962301 + 16962281 16962321 41 CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTC CCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCACTCCTC < 41bp 1 0.27212428579769 1 0.29907900094986 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962301 chr19:16962315 synonymous SNV . 0 35 hm5C_associated_SNPs_42148 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41247 DeepMRMD:1;iRNA_m5C:0.999536712157815 41248 chr2 27438235 27438235 1 + C A UCEC 27438244 + 27438224 27438264 41 GTCCAAACTTTCATCAGGCACATACCACTGTCATCATGTAA GTCCAAACTTTAATCAGGCACATACCACTGTCATCATGTAA < 41bp 1 0.0470882954479984 1 0.0832727253437042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATRAID ENSG00000138085 CDS Human protein_coding chr2:27438244 chr2:27438235 nonsynonymous SNV 0.508 0 12 hm5C_associated_SNPs_42149 0 0 1 0 2 Endoplasmic reticulum 1 0.500231638323035 1 0.999536723353931 hm5C_site_41248 DeepMRMD:1;iRNA_m5C:0.999536723353931 41249 chr1 44087623 44087623 1 + C T UCEC 44087609 + 44087589 44087629 41 GCCCCCTATCCTGGCAGGACCAGTATCAGCTGTGCTACCGT GCCCCCTATCCTGGCAGGACCAGTATCAGCTGTGTTACCGT < 41bp 1 0.34037300708931 1 0.273751139640808 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44087609 chr1:44087623 synonymous SNV . 0 35 hm5C_associated_SNPs_42150 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41249 DeepMRMD:1;iRNA_m5C:0.999536712157815 41250 chr19 44732659 44732659 1 + G A UCEC 44732653 + 44732633 44732673 41 TCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGG TCTCCAGGGAGGAACTGCGACTGCTCAATCTTACCCAGAGG < 41bp 1 0.64295359412612 1 0.419205486774445 experiment 0.714092811747761 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732653 chr19:44732659 nonsynonymous SNV 0.318 3 27 hm5C_associated_SNPs_42151 0 0 1 0 3 cytosol 1 0.500231664268207 1 0.999536671463586 hm5C_site_41250 DeepMRMD:1;iRNA_m5C:0.999536671463586 41251 chr10 45486405 45486405 1 + A C UCEC 45486398 + 45486378 45486418 41 AACCACCTTCTTTTTCAGAGCGGACAAAATTAAAAGACTGC AACCACCTTCTTTTTCAGAGCGGACAACATTAAAAGACTGC < 41bp 1 0.068174993335691 1 0.352331697940826 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486398 chr10:45486405 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_42152 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41251 DeepMRMD:1;iRNA_m5C:0.999536712157815 41252 chr7 142460307 142460307 1 + C T UCEC 142460289 + 142460269 142460309 41 CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCT CTGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGTCT < 41bp 1 0.11933823966708 1 0.178094238042831 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460289 chr7:142460307 synonymous SNV . 0 39 hm5C_associated_SNPs_42153 0 0 0 0 1 Cytosol 1 0.500231643926514 1 0.999536712146972 hm5C_site_41252 DeepMRMD:1;iRNA_m5C:0.999536712146972 41253 chr7 142460307 142460307 1 + C T UCEC 142460290 + 142460270 142460310 41 TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTG TGATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGTCTG < 41bp 1 0.375046647998246 1 0.27952367067337 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460290 chr7:142460307 synonymous SNV . 0 38 hm5C_associated_SNPs_42154 0 0 0 0 1 Cytosol 1 0.500231656197922 1 0.999536687604156 hm5C_site_41253 DeepMRMD:1;iRNA_m5C:0.999536687604156 41254 chr7 142460307 142460307 1 + C T UCEC 142460291 + 142460271 142460311 41 GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGG GATCCTCACAGCCGACTACCCAGACGAGCTGCAGTGTCTGG < 41bp 1 0.401513148203527 1 0.298834800720215 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460291 chr7:142460307 synonymous SNV . 0 37 hm5C_associated_SNPs_42155 0 0 0 0 1 Cytosol 1 0.500231643502562 1 0.999536712994876 hm5C_site_41254 DeepMRMD:1;iRNA_m5C:0.999536712994876 41255 chr7 142460307 142460307 1 + C T UCEC 142460295 + 142460275 142460315 41 CTCACAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGC CTCACAGCCGACTACCCAGACGAGCTGCAGTGTCTGGATGC < 41bp 1 0.382502128922309 1 0.151485085487366 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460295 chr7:142460307 synonymous SNV . 0 33 hm5C_associated_SNPs_42156 0 0 0 0 1 Cytosol 1 0.500231920582845 1 0.99953615883431 hm5C_site_41255 DeepMRMD:1;iRNA_m5C:0.99953615883431 41256 chr7 142460307 142460307 1 + C T UCEC 142460299 + 142460279 142460319 41 CAGCCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCT CAGCCGACTACCCAGACGAGCTGCAGTGTCTGGATGCTCCT < 41bp 1 0.66010175000017 1 0.128994286060333 experiment 0.67979649999966 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460299 chr7:142460307 synonymous SNV . 0 29 hm5C_associated_SNPs_42157 0 0 0 0 1 Cytosol 1 0.500231640795654 1 0.999536718408691 hm5C_site_41256 DeepMRMD:1;iRNA_m5C:0.999536718408691 41257 chr7 142460307 142460307 1 + C T UCEC 142460302 + 142460282 142460322 41 CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTG CCGACTACCCAGACGAGCTGCAGTGTCTGGATGCTCCTGTG < 41bp 1 0.344743898283415 1 0.200584471225739 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460302 chr7:142460307 synonymous SNV . 0 26 hm5C_associated_SNPs_42158 0 0 0 0 1 Cytosol 1 0.500232651659805 1 0.99953469668039 hm5C_site_41257 DeepMRMD:1;iRNA_m5C:0.99953469668039 41258 chr7 142460307 142460307 1 + C T UCEC 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGTCTGGATGCTCCTGTGCTGAGCCAGGCTA < 41bp 1 0.428833777687801 1 0.110015243291855 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460307 synonymous SNV . 0 13 hm5C_associated_SNPs_42159 0 0 0 0 1 Cytosol 1 0.500310351895651 1 0.999379296208698 hm5C_site_41258 DeepMRMD:1;iRNA_m5C:0.999379296208698 41259 chr7 142460307 142460307 1 + C T UCEC 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGTCTGGATGCTCCTGTGCTGAGCCAGGCTAAG < 41bp 1 0.214553152779804 1 0.388782292604446 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460307 synonymous SNV . 0 11 hm5C_associated_SNPs_42160 0 0 0 0 1 Cytosol 1 0.500231644031299 1 0.999536711937401 hm5C_site_41259 DeepMRMD:1;iRNA_m5C:0.999536711937401 41260 chr7 142460307 142460307 1 + C T UCEC 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGTCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT < 41bp 1 0.482719666773831 1 0.34614971280098 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460307 synonymous SNV . 0 10 hm5C_associated_SNPs_42161 0 0 0 0 1 Cytosol 1 0.500231645590326 1 0.999536708819347 hm5C_site_41260 DeepMRMD:1;iRNA_m5C:0.999536708819347 41261 chr7 142460307 142460307 1 + C T UCEC 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGTCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA < 41bp 1 0.472384432002304 1 0.0677043795585632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460307 synonymous SNV . 0 5 hm5C_associated_SNPs_42162 0 0 0 0 1 Cytosol 1 0.500231644183165 1 0.99953671163367 hm5C_site_41261 DeepMRMD:1;iRNA_m5C:0.99953671163367 41262 chr15 99460067 99460067 1 + C A UCEC 99460083 + 99460063 99460103 41 AAGTCTTTGAGAATTTCCTGCACAACTCCATCTTCGTGCCC AAGTATTTGAGAATTTCCTGCACAACTCCATCTTCGTGCCC < 41bp 1 0.259668454822094 1 0.129899263381958 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99460083 chr15:99460067 synonymous SNV . 0 5 hm5C_associated_SNPs_42163 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643745367 1 0.999536712509267 hm5C_site_41262 DeepMRMD:1;iRNA_m5C:0.999536712509267 41263 chr1 118499759 118499759 1 + A C UCEC 118499775 + 118499755 118499795 41 AACGAATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG AACGCATTCATTCAGCTGGGCTCTGATGTTGAACTTATATG < 41bp 1 0.145097441034538 1 0.0528576970100403 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR3 ENSG00000065183 CDS Human protein_coding chr1:118499775 chr1:118499759 nonsynonymous SNV 0.749 0 5 hm5C_associated_SNPs_42164 0 0 1 0 2 Nucleus 1 0.500231643922301 1 0.999536712155398 hm5C_site_41263 DeepMRMD:1;iRNA_m5C:0.999536712155398 41264 chr19 7604936 7604936 1 + G T UCEC 7604931 + 7604911 7604951 41 CCTCTGAAGTGCTTTATATGCTCAAGAACGTCCGGTCAGTG CCTCTGAAGTGCTTTATATGCTCAATAACGTCCGGTCAGTG < 41bp 1 0.653646372848253 1 0.587534308433533 experiment 0.692707254303494 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7604931 chr19:7604936 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_42165 0 0 1 0 2 Ribosome 1 0.500231643921113 0.824931383132934 0.999536712157775 hm5C_site_41264 DeepMRMD:0.824931383132934;iRNA_m5C:0.999536712157775 41265 chrX 70344188 70344188 1 + G A UCEC 70344193 + 70344173 70344213 41 TTTGATGATCCTGCCGATGACCCAGAGCACAAGGAGGCTGA TTTGATGATCCTGCCAATGACCCAGAGCACAAGGAGGCTGA < 41bp 1 0.332704701686871 1 0.0526464581489563 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70344193 chrX:70344188 nonsynonymous SNV 0.920 2 16 hm5C_associated_SNPs_42166 0 0 1 0 1 Cytosol 1 0.500231643888675 1 0.999536712222649 hm5C_site_41265 DeepMRMD:1;iRNA_m5C:0.999536712222649 41266 chr20 36662483 36662483 1 + A G UCEC 36662465 + 36662445 36662485 41 CCACCGCAAGCACGCGGGACCCATCGTCTCCGTGTGGCACC CCACCGCAAGCACGCGGGACCCATCGTCTCCGTGTGGCGCC < 41bp 1 0.175090812502842 1 0.0379385650157928 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36662465 chr20:36662483 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_42167 0 0 1 0 1 Ribosome 1 0.500231640291544 1 0.999536719416911 hm5C_site_41266 DeepMRMD:1;iRNA_m5C:0.999536719416911 41267 chr17 66033533 66033533 1 + C G UCEC 66033520 + 66033500 66033540 41 CAATGTGGAGCTGAGGAAAGCTAAGAAGGATGACCAGATGC CAATGTGGAGCTGAGGAAAGCTAAGAAGGATGAGCAGATGC < 41bp 1 0.563861311071983 1 0.154534250497818 experiment 0.872277377856034 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033520 chr17:66033533 nonsynonymous SNV 0.895 0 34 hm5C_associated_SNPs_42168 0 0 1 0 2 Cytosol 1 0.500231643966055 1 0.999536712067891 hm5C_site_41267 DeepMRMD:1;iRNA_m5C:0.999536712067891 41268 chr6 26093184 26093184 1 + C T UCEC 26093171 + 26093151 26093191 41 GCACCCAGGCCTGGATCAGCCCCTCATTGTGATCTGGGGTA GCACCCAGGCCTGGATCAGCCCCTCATTGTGATTTGGGGTA < 41bp 1 0.17867953780413 1 0.0446358621120453 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26093171 chr6:26093184 synonymous SNV . 0 34 hm5C_associated_SNPs_42170 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643723074 1 0.999536712553852 hm5C_site_41268 DeepMRMD:1;iRNA_m5C:0.999536712553852 41269 chr6 27833357 27833357 1 + G A UCEC 27833344 + 27833324 27833364 41 GGAGCTGGCGGGCAACGCCGCCCGCGACAACAAGAAGACCC GGAGCTGGCGGGCAACGCCGCCCGCGACAACAAAAAGACCC < 41bp 1 0.353983366412861 1 0.429449498653412 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AL ENSG00000198374 CDS Human other chr6:27833344 chr6:27833357 synonymous SNV . 0 34 hm5C_associated_SNPs_42171 0 0 1 0 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_41269 DeepMRMD:1;iRNA_m5C:0.999536712157815 41270 chr6 27833357 27833357 1 + G A UCEC 27833345 + 27833325 27833365 41 GAGCTGGCGGGCAACGCCGCCCGCGACAACAAGAAGACCCG GAGCTGGCGGGCAACGCCGCCCGCGACAACAAAAAGACCCG < 41bp 1 0.407609471332817 1 0.372019678354263 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AL ENSG00000198374 CDS Human other chr6:27833345 chr6:27833357 synonymous SNV . 0 33 hm5C_associated_SNPs_42172 0 0 1 0 0 exosome 1 0.500231643921164 1 0.999536712157673 hm5C_site_41270 DeepMRMD:1;iRNA_m5C:0.999536712157673 41271 chr3 184038422 184038422 1 + G A UCEC 184038413 + 184038393 184038433 41 TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCGAGATC TCATCTTATAGCTTTCTTTCCCCAGATCCAAATTCGAGATC < 41bp 1 0.141098410122499 1 0.19976469874382 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184038413 chr3:184038422 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_42173 0 0 1 0 1 Nucleus 1 0.500231643380286 1 0.999536713239428 hm5C_site_41271 DeepMRMD:1;iRNA_m5C:0.999536713239428 41272 chr9 125143655 125143655 1 + A G UCEC 125143665 + 125143645 125143685 41 ACCAGGGAAGAAGCAGTTGCCAGATGCCCAGCTCCTGGCCC ACCAGGGAAGGAGCAGTTGCCAGATGCCCAGCTCCTGGCCC < 41bp 1 0.698902750282861 1 0.959330201148987 experiment 0.602194499434277 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125143665 chr9:125143655 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_42174 0 0 1 0 1 nucleolus 1 0.500231643920805 0.0813395977020259 0.999536712158389 hm5C_site_41272 DeepMRMD:0.0813395977020259;iRNA_m5C:0.999536712158389 41273 chr4 154318410 154318410 1 + C T UCEC 154318425 + 154318405 154318445 41 CACTTCGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA CACTTTGAGACCAAAGGGAACAGCTAAAGGCAGAAGTAGAA < 41bp 1 0.2772314437683 1 0.400718569755554 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MND1 ENSG00000121211 CDS Human protein_coding chr4:154318425 chr4:154318410 stopgain 0.891 0 6 hm5C_associated_SNPs_42175 0 0 1 0 2 chromatin 1 0.500231643921617 1 0.999536712156766 hm5C_site_41273 DeepMRMD:1;iRNA_m5C:0.999536712156766 41274 chr17 40931084 40931084 1 + C A UCEC 40931095 + 40931075 40931115 41 CAAGTTCTTCTAGCAGGGACCTGTCTCCCTTTACTTCTTAC CAAGTTCTTATAGCAGGGACCTGTCTCCCTTTACTTCTTAC < 41bp 1 0.154938607373665 1 0.0720909535884857 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control VPS25 ENSG00000131475 CDS Human protein_coding chr17:40931095 chr17:40931084 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_42178 0 0 1 0 0 Ribosome 1 0.500231643921032 1 0.999536712157936 hm5C_site_41274 DeepMRMD:1;iRNA_m5C:0.999536712157936 41275 chrX 123229252 123229252 1 + G T UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACGAGAGAGAACATAACTGAAGCCTGATTTCT < 41bp 1 0.200344957210896 1 0.17824187874794 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229252 stopgain 1.000 1 23 hm5C_associated_SNPs_42179 0 0 1 0 2 Nucleus 1 0.500231643931904 1 0.999536712136192 hm5C_site_41275 DeepMRMD:1;iRNA_m5C:0.999536712136192 41276 chr22 19707382 19707382 1 + T G UCEC 19707377 + 19707357 19707397 41 GGTCCACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA GGTCCACAGCCTCTTCCTGACAGACGTGTACAAGGACCGGA < 41bp 1 0.29003777490199 1 0.112733483314514 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707377 chr22:19707382 nonsynonymous SNV 0.998 2 26 hm5C_associated_SNPs_42180 0 0 0 0 1 chromatin 1 0.500231350286776 1 0.999537299426448 hm5C_site_41276 DeepMRMD:1;iRNA_m5C:0.999537299426448 41277 chr2 61258844 61258844 1 + G A UCEC 61258852 + 61258832 61258872 41 AAAGCAGCAGGGGTGCATTTCAGTCCATTGAAAGTATTGTG AAAGCAGCAGGGATGCATTTCAGTCCATTGAAAGTATTGTG < 41bp 1 0.204247978134007 1 0.354096531867981 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PEX13 ENSG00000162928 CDS Human protein_coding chr2:61258852 chr2:61258844 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_42181 0 0 0 0 0 Ribosome 1 0.500231641759393 1 0.999536716481214 hm5C_site_41277 DeepMRMD:1;iRNA_m5C:0.999536716481214 41278 chrX 16753426 16753426 1 + G T UCEC 16753431 + 16753411 16753451 41 AGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAG AGCACAAACAATAAATAAATCCGTAGAAGAAGGAAAAATAG < 41bp 1 0.388191961773353 1 0.250655353069305 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16753431 chrX:16753426 nonsynonymous SNV 0.978 3 16 hm5C_associated_SNPs_42182 0 0 1 0 3 Ribosome 1 0.500231643918474 1 0.999536712163051 hm5C_site_41278 DeepMRMD:1;iRNA_m5C:0.999536712163051 41279 chr10 292721 292721 1 + T G UCEC 292709 + 292689 292729 41 TTATGTGTTTTTCCTAGGGCCTGGATTCCTTCTGAAAACAT TTATGTGTTTTTCCTAGGGCCTGGATTCCTTCGGAAAACAT < 41bp 1 0.6584724768972 1 0.348013252019882 experiment 0.683055046205599 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:292709 chr10:292721 synonymous SNV . 0 33 hm5C_associated_SNPs_42183 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_41279 DeepMRMD:1;iRNA_m5C:0.999536712157815 41280 chr2 114713249 114713249 1 + C A UCEC 114713267 + 114713247 114713287 41 TGCAGTTTGGTTTGGAGGATCAATGCTGGCTTCCACGGTGA TGAAGTTTGGTTTGGAGGATCAATGCTGGCTTCCACGGTGA < 41bp 1 0.352630327587728 1 0.138211518526077 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114713267 chr2:114713249 nonsynonymous SNV 0.991 5 3 hm5C_associated_SNPs_42185 0 0 1 0 2 Ribosome 1 0.500231643921125 1 0.999536712157751 hm5C_site_41280 DeepMRMD:1;iRNA_m5C:0.999536712157751 41281 chr2 71783097 71783097 1 + A C UCEC 71783115 + 71783095 71783135 41 GAAGCTGGCCTGGAGCAGGTCCACCTGGCCCTGAAGGCGCA GACGCTGGCCTGGAGCAGGTCCACCTGGCCCTGAAGGCGCA < 41bp 1 0.175865051292898 1 0.0856704711914062 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71783115 chr2:71783097 nonsynonymous SNV 0.996 3 3 hm5C_associated_SNPs_42186 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41281 DeepMRMD:1;iRNA_m5C:0.999536712157815 41282 chrX 48369802 48369802 1 + C A UCEC 48369821 + 48369801 48369841 41 GCTGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC GATGTTCCTCTGCCGACATTCCTCCCATCGAGGCGTCTTCC < 41bp 1 0.070570018466766 1 0.0514118075370789 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PORCN ENSG00000102312 CDS Human protein_coding chrX:48369821 chrX:48369802 nonsynonymous SNV 1.000 5 2 hm5C_associated_SNPs_42187 0 0 0 0 2 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41282 DeepMRMD:1;iRNA_m5C:0.999536712157815 41283 chr15 101169714 101169714 1 + G A UCEC 101169701 + 101169681 101169721 41 CTCTTCACTATGCAGCCATGCATGGCCGGGCCCGCATTGCA CTCTTCACTATGCAGCCATGCATGGCCGGGCCCACATTGCA < 41bp 1 0.357378956569669 1 0.0405502617359161 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASB7 ENSG00000183475 CDS Human protein_coding chr15:101169701 chr15:101169714 nonsynonymous SNV 0.997 2 34 hm5C_associated_SNPs_42188 0 0 1 0 1 Ribosome 1 0.500231643911163 1 0.999536712177675 hm5C_site_41283 DeepMRMD:1;iRNA_m5C:0.999536712177675 41284 chr10 89505610 89505610 1 + C A UCEC 89505590 + 89505570 89505610 41 TGTTGCCACCCTGTAACAGGCACAATGAGTTTGACTTCATC TGTTGCCACCCTGTAACAGGCACAATGAGTTTGACTTCATA < 41bp 1 0.535694180553229 1 0.106844276189804 experiment 0.928611638893542 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89505590 chr10:89505610 synonymous SNV . 0 41 hm5C_associated_SNPs_42189 0 0 1 0 1 Cytosol 1 0.500231651947768 1 0.999536696104464 hm5C_site_41284 DeepMRMD:1;iRNA_m5C:0.999536696104464 41285 chr11 61404879 61404879 1 + A G UCEC 61404895 + 61404875 61404915 41 ATCGACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGAC ATCGGCGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGAC < 41bp 1 0.262434401174739 1 0.101578652858734 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404895 chr11:61404879 . . 0 5 hm5C_associated_SNPs_42191 0 0 0 0 0 unknown 1 0.500231555285773 1 0.999536889428455 hm5C_site_41285 DeepMRMD:1;iRNA_m5C:0.999536889428455 41286 chr3 138341067 138341067 1 + G T UCEC 138341068 + 138341048 138341088 41 TGGATGTTCAAATTAGTGGGCAAAGAAACATTCTATGTTGG TGGATGTTCAAATTAGTGGTCAAAGAAACATTCTATGTTGG < 41bp 1 0.186174186943194 1 0.573011636734009 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138341068 chr3:138341067 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_42192 0 0 1 0 1 Ribosome 1 0.500231643921093 0.853976726531982 0.999536712157815 hm5C_site_41286 DeepMRMD:0.853976726531982;iRNA_m5C:0.999536712157815 41287 chr10 118313344 118313344 1 + A G UCEC 118313333 + 118313313 118313353 41 TGGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTT TGGAAGGAGAACCAATGGGACCATTGGACGCGTCACAGGTT < 41bp 1 0.134815921133538 1 0.0478155910968781 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313333 chr10:118313344 nonsynonymous SNV 0.803 3 32 hm5C_associated_SNPs_42194 0 0 0 0 1 unknown 1 0.500231703952434 1 0.999536592095133 hm5C_site_41287 DeepMRMD:1;iRNA_m5C:0.999536592095133 41288 chr10 118313344 118313344 1 + A G UCEC 118313334 + 118313314 118313354 41 GGAAGGAGAACCAATGGGACCATTGGACGCATCACAGGTTG GGAAGGAGAACCAATGGGACCATTGGACGCGTCACAGGTTG < 41bp 1 0.438416646821718 1 0.201191514730453 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118313334 chr10:118313344 nonsynonymous SNV 0.803 3 31 hm5C_associated_SNPs_42195 0 0 0 0 1 unknown 1 0.500231643896757 1 0.999536712206485 hm5C_site_41288 DeepMRMD:1;iRNA_m5C:0.999536712206485 41289 chrX 100880810 100880810 1 + C T UCEC 100880794 + 100880774 100880814 41 AATTTGGCTGAAAATCCAGCCATGACTAGGGAACTGCTCAG AATTTGGCTGAAAATCCAGCCATGACTAGGGAACTGTTCAG < 41bp 1 0.591408138084091 1 0.167367845773697 experiment 0.817183723831817 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880794 chrX:100880810 nonsynonymous SNV 0.994 1 37 hm5C_associated_SNPs_42196 0 0 1 0 0 Endoplasmic reticulum 1 0.500231636649493 1 0.999536726701014 hm5C_site_41289 DeepMRMD:1;iRNA_m5C:0.999536726701014 41290 chr11 129996715 129996715 1 + G A UCEC 129996707 + 129996687 129996727 41 GAGCAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGT GAGCAGCTGGAGATTCGGCACCGCAACCAAATGGACAGGGT < 41bp 1 0.438861796490428 1 0.10922509431839 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:129996707 chr11:129996715 nonsynonymous SNV 1.000 2 29 hm5C_associated_SNPs_42197 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643944181 1 0.999536712111639 hm5C_site_41290 DeepMRMD:1;iRNA_m5C:0.999536712111639 41291 chr11 129996715 129996715 1 + G A UCEC 129996710 + 129996690 129996730 41 CAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAA CAGCTGGAGATTCGGCACCGCAACCAAATGGACAGGGTAAA < 41bp 1 0.12571134429898 1 0.077593058347702 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:129996710 chr11:129996715 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_42198 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643919292 1 0.999536712161416 hm5C_site_41291 DeepMRMD:1;iRNA_m5C:0.999536712161416 41292 chr21 46624547 46624547 1 + G A UCEC 46624567 + 46624547 46624587 41 GCAGCCTTTACCACGGGGACCACCTTTCCAGGGCCATGTAC ACAGCCTTTACCACGGGGACCACCTTTCCAGGGCCATGTAC < 41bp 1 0.316757278872756 1 0.0510813891887665 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46624567 chr21:46624547 nonsynonymous SNV 0.998 5 1 hm5C_associated_SNPs_42199 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41292 DeepMRMD:1;iRNA_m5C:0.999536712157815 41293 chr5 139876768 139876768 1 + G A UCEC 139876749 + 139876729 139876769 41 ATCAGCAGATTGTAGGACAGCCTCAGATTGCTATTACTGGA ATCAGCAGATTGTAGGACAGCCTCAGATTGCTATTACTGAA < 41bp 1 0.145995203421771 1 0.0471703112125397 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139876749 chr5:139876768 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_42200 0 0 1 0 1 unknown 1 0.500226646658886 1 0.999546706682228 hm5C_site_41293 DeepMRMD:1;iRNA_m5C:0.999546706682228 41294 chr2 204259478 204259478 1 + G T UCEC 204259473 + 204259453 204259493 41 AGTGCGTCCTCCAGTGGTACCAAATGATTACGTACCTAGCC AGTGCGTCCTCCAGTGGTACCAAATTATTACGTACCTAGCC < 41bp 1 0.437865452025504 1 0.642450094223022 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204259473 chr2:204259478 nonsynonymous SNV 1.000 5 26 hm5C_associated_SNPs_42201 0 0 1 0 1 Cytosol 1 0.500231643920945 0.715099811553956 0.999536712158111 hm5C_site_41294 DeepMRMD:0.715099811553956;iRNA_m5C:0.999536712158111 41295 chr17 78350182 78350182 1 + G A UCEC 78350171 + 78350151 78350191 41 TCCTGATATCAGCCGTTTTGCAACATCGCTCGTGGACAATT TCCTGATATCAGCCGTTTTGCAACATCGCTCATGGACAATT < 41bp 1 0.19503544261616 1 0.417670696973801 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78350171 chr17:78350182 nonsynonymous SNV 0.010 4 32 hm5C_associated_SNPs_42202 0 0 1 0 1 Nucleus 1 0.500231643921088 1 0.999536712157824 hm5C_site_41295 DeepMRMD:1;iRNA_m5C:0.999536712157824 41296 chr1 228496035 228496035 1 + C A UCEC 228496015 + 228495995 228496035 41 TGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTC TGCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTA < 41bp 1 0.157811901847828 1 0.717167615890503 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496015 chr1:228496035 synonymous SNV . 0 41 hm5C_associated_SNPs_42203 0 0 0 0 1 Ribosome 1 0.500231652824335 0.565664768218994 0.999536694351331 hm5C_site_41296 DeepMRMD:0.565664768218994;iRNA_m5C:0.999536694351331 41297 chr1 228496035 228496035 1 + C A UCEC 228496016 + 228495996 228496036 41 GCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCT GCGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTAT < 41bp 1 0.0768179865426357 1 0.496990919113159 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496016 chr1:228496035 synonymous SNV . 0 40 hm5C_associated_SNPs_42204 0 0 0 0 1 Ribosome 1 0.500231643921878 1 0.999536712156245 hm5C_site_41297 DeepMRMD:1;iRNA_m5C:0.999536712156245 41298 chr1 228496035 228496035 1 + C A UCEC 228496017 + 228495997 228496037 41 CGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTCTC CGGCTGAAGGGCGTGACGCCCGAGGACGCTGGCACTGTATC < 41bp 1 0.196805593901399 1 0.888394713401794 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228496017 chr1:228496035 synonymous SNV . 0 39 hm5C_associated_SNPs_42205 0 0 0 0 1 Ribosome 1 0.500231642765569 0.223210573196412 0.999536714468862 hm5C_site_41298 DeepMRMD:0.223210573196412;iRNA_m5C:0.999536714468862 41299 chr11 33370238 33370238 1 + C A UCEC 33370247 + 33370227 33370267 41 GGACTCTGATTCATCAGTTTCAGACAAACAGCGGCAAACCA GGACTCTGATTAATCAGTTTCAGACAAACAGCGGCAAACCA < 41bp 1 0.219082339197383 1 0.497317790985107 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33370247 chr11:33370238 stopgain 0.988 0 12 hm5C_associated_SNPs_42206 0 0 1 0 0 Cytosol 1 0.500231633988899 1 0.999536732022202 hm5C_site_41299 DeepMRMD:1;iRNA_m5C:0.999536732022202 41300 chr17 38610244 38610244 1 + G A UCEC 38610248 + 38610228 38610268 41 GCCGCTTCACAGAGCCGCACCCACGAGGACCTCTACATCAT GCCGCTTCACAGAGCCACACCCACGAGGACCTCTACATCAT < 41bp 1 0.361797372876791 1 0.114600241184235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610248 chr17:38610244 nonsynonymous SNV 0.990 4 17 hm5C_associated_SNPs_42207 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41300 DeepMRMD:1;iRNA_m5C:0.999536712157815 41301 chr5 102345548 102345548 1 + A C UCEC 102345555 + 102345535 102345575 41 GGGGAAATTATAGACATCTTCAAGCCAGTGCGCAAGGTATT GGGGAAATTATAGCCATCTTCAAGCCAGTGCGCAAGGTATT < 41bp 1 0.266703556342773 1 0.507109880447388 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102345555 chr5:102345548 nonsynonymous SNV 0.154 4 14 hm5C_associated_SNPs_42208 0 0 0 0 2 Ribosome 1 0.50023270024415 0.985780239105224 0.999534599511701 hm5C_site_41301 DeepMRMD:0.985780239105224;iRNA_m5C:0.999534599511701 41302 chr11 35250853 35250853 1 + G T UCEC 35250851 + 35250831 35250871 41 CTGATGAGACAAGGAACCTGCAGAATGTGGACATGAAGATT CTGATGAGACAAGGAACCTGCATAATGTGGACATGAAGATT < 41bp 1 0.306641980941521 1 0.102656066417694 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35250851 chr11:35250853 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_42209 0 0 1 1 0 Nucleus 1 0.500231643920945 1 0.999536712158109 hm5C_site_41302 DeepMRMD:1;iRNA_m5C:0.999536712158109 41303 chr5 71618005 71618005 1 + G T UCEC 71617999 + 71617979 71618019 41 TTTCTTTCTCTGATTTTTAGCTAAAAGATACCTACTTACAG TTTCTTTCTCTGATTTTTAGCTAAAATATACCTACTTACAG < 41bp 1 0.359946798140243 1 0.230035454034805 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71617999 chr5:71618005 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_42210 0 0 0 0 2 chromatin 1 0.500231643965069 1 0.999536712069862 hm5C_site_41303 DeepMRMD:1;iRNA_m5C:0.999536712069862 41304 chr4 107268711 107268711 1 + G T UCEC 107268727 + 107268707 107268747 41 CTAAGAAGAAGATTTGGGAGCAGATCCAGCCTGATCTTCAC CTAATAAGAAGATTTGGGAGCAGATCCAGCCTGATCTTCAC < 41bp 1 0.373366522526251 1 0.284045219421387 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107268727 chr4:107268711 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_42211 0 0 1 0 1 Ribosome 1 0.500231643919765 1 0.999536712160471 hm5C_site_41304 DeepMRMD:1;iRNA_m5C:0.999536712160471 41305 chr3 66430818 66430818 1 + C T UCEC 66430812 - 66430792 66430832 41 GTCCAGAGCGCGCGGAAGCCCAGTACTTGCTTGTTTCCAAT GTCCAGAGCGCGCGAAAGCCCAGTACTTGCTTGTTTCCAAT < 41bp 1 0.547662506965684 1 0.278127431869507 experiment 0.904674986068632 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430812 chr3:66430818 nonsynonymous SNV 0.001 0 15 hm5C_associated_SNPs_42212 0 0 0 0 1 Ribosome 1 0.500231643921108 1 0.999536712157785 hm5C_site_41305 DeepMRMD:1;iRNA_m5C:0.999536712157785 41306 chr7 128119308 128119308 1 + T G UCEC 128119323 + 128119303 128119343 41 CGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT CGAATGCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT < 41bp 1 0.13668825857769 1 0.133847266435623 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METTL2B ENSG00000165055 CDS Human protein_coding chr7:128119323 chr7:128119308 nonsynonymous SNV 0.992 4 6 hm5C_associated_SNPs_42213 0 0 1 0 1 Ribosome 1 0.500230888361522 1 0.999538223276957 hm5C_site_41306 DeepMRMD:1;iRNA_m5C:0.999538223276957 41307 chr1 22332195 22332195 1 + C T UCEC 22332191 + 22332171 22332211 41 CAGGTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGG CAGGTGGTGTTGGGTGAGTACAACTTTGCTGTGAAGGAGGG < 41bp 1 0.493679013949279 1 0.433426052331924 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332191 chr1:22332195 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_42214 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921098 1 0.999536712157804 hm5C_site_41307 DeepMRMD:1;iRNA_m5C:0.999536712157804 41308 chr1 22332195 22332195 1 + C T UCEC 22332194 + 22332174 22332214 41 GTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCC GTGGTGTTGGGTGAGTACAACTTTGCTGTGAAGGAGGGCCC < 41bp 1 0.270109924899217 1 0.285481631755829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332194 chr1:22332195 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_42215 0 0 0 0 2 Endoplasmic reticulum 1 0.500231639224566 1 0.999536721550868 hm5C_site_41308 DeepMRMD:1;iRNA_m5C:0.999536721550868 41309 chr1 22332195 22332195 1 + C T UCEC 22332199 + 22332179 22332219 41 GTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGC GTTGGGTGAGTACAACTTTGCTGTGAAGGAGGGCCCCGAGC < 41bp 1 0.690352787313675 1 0.0749975740909576 experiment 0.61929442537265 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332199 chr1:22332195 nonsynonymous SNV 0.001 2 17 hm5C_associated_SNPs_42216 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643923606 1 0.999536712152787 hm5C_site_41309 DeepMRMD:1;iRNA_m5C:0.999536712152787 41310 chr1 22332195 22332195 1 + C T UCEC 22332212 + 22332192 22332232 41 AACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT AACTTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCAT < 41bp 1 0.295895266264984 1 0.140396237373352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332212 chr1:22332195 nonsynonymous SNV 0.001 2 4 hm5C_associated_SNPs_42217 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_41310 DeepMRMD:1;iRNA_m5C:0.999536712157816 41311 chr1 22332195 22332195 1 + C T UCEC 22332214 + 22332194 22332234 41 CCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA CTTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCA < 41bp 1 0.521549803348293 1 0.260467797517776 experiment 0.956900393303414 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332214 chr1:22332195 nonsynonymous SNV 0.001 2 2 hm5C_associated_SNPs_42219 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_41311 DeepMRMD:1;iRNA_m5C:0.999536712157815 41312 chr10 75830567 75830567 1 + G A UCEC 75830552 + 75830532 75830572 41 TCCTCTCTGGAACATCAGACCTGCTCCTTACCTTCGATGAG TCCTCTCTGGAACATCAGACCTGCTCCTTACCTTCAATGAG < 41bp 1 0.308678943994952 1 0.0504015982151031 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75830552 chr10:75830567 nonsynonymous SNV 0.998 4 36 hm5C_associated_SNPs_42221 0 0 1 0 1 Nucleus 1 0.500231643925948 1 0.999536712148104 hm5C_site_41312 DeepMRMD:1;iRNA_m5C:0.999536712148104 41313 chr11 57373909 57373909 1 + G T UCEC 57373925 + 57373905 57373945 41 CCAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA CCAATAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCA < 41bp 1 0.0168171932082742 1 0.0582644939422607 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373925 chr11:57373909 nonsynonymous SNV 0.000 2 5 hm5C_associated_SNPs_42222 0 0 0 0 1 Endoplasmic reticulum 1 0.500231667707728 1 0.999536664584544 hm5C_site_41313 DeepMRMD:1;iRNA_m5C:0.999536664584544 41314 chr11 57373909 57373909 1 + G T UCEC 57373926 + 57373906 57373946 41 CAAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG CAATAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAG < 41bp 1 0.0116819321811495 1 0.121042102575302 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373926 chr11:57373909 nonsynonymous SNV 0.000 2 4 hm5C_associated_SNPs_42223 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921111 1 0.999536712157778 hm5C_site_41314 DeepMRMD:1;iRNA_m5C:0.999536712157778 41315 chr11 57373909 57373909 1 + G T UCEC 57373927 + 57373907 57373947 41 AAGAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT AATAAAACCAGAATGGAACCCTTTCACTTCAAAAACTCAGT < 41bp 1 0.0183549901354522 1 0.0574821829795837 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373927 chr11:57373909 nonsynonymous SNV 0.000 2 3 hm5C_associated_SNPs_42224 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164392102 1 0.999536712157961 hm5C_site_41315 DeepMRMD:1;iRNA_m5C:0.999536712157961 41316 chrX 17770030 17770030 1 + C A UCEC 17770024 + 17770004 17770044 41 GGTCGGTGGAAGCAGTGGTCCTATTTCTAAAACAAACAGAT GGTCGGTGGAAGCAGTGGTCCTATTTATAAAACAAACAGAT < 41bp 1 0.328913412272107 1 0.329290628433228 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCML1 ENSG00000047634 CDS Human protein_coding chrX:17770024 chrX:17770030 nonsynonymous SNV 0.011 2 27 hm5C_associated_SNPs_42225 0 0 1 0 2 insoluble cytoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_41316 DeepMRMD:1;iRNA_m5C:0.999536712157815 41317 chr18 21508196 21508196 1 + G A UCEC 21508180 + 21508160 21508200 41 AATGATACTGTGGGAGTAACCAAAAAGTGCTCGGAAGACTG AATGATACTGTGGGAGTAACCAAAAAGTGCTCGGAAAACTG < 41bp 1 0.412819602437313 1 0.800147771835327 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21508180 chr18:21508196 nonsynonymous SNV 0.983 3 37 hm5C_associated_SNPs_42226 0 0 0 0 1 Cytosol 1 0.500231643920783 0.399704456329346 0.999536712158434 hm5C_site_41317 DeepMRMD:0.399704456329346;iRNA_m5C:0.999536712158434 41318 chrX 135593865 135593865 1 + A C UCEC 135593870 + 135593850 135593890 41 AATATGCAGATGAAAAGGGGCTTGAAGCTGCTGATAAAAAG AATATGCAGATGAAACGGGGCTTGAAGCTGCTGATAAAAAG < 41bp 1 0.322185687141826 1 0.183488577604294 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593870 chrX:135593865 nonsynonymous SNV 0.536 1 16 hm5C_associated_SNPs_42227 0 0 1 0 0 Ribosome 1 0.50023164398283 1 0.99953671203434 hm5C_site_41318 DeepMRMD:1;iRNA_m5C:0.99953671203434 41319 chrX 135593865 135593865 1 + A C UCEC 135593880 + 135593860 135593900 41 TGAAAAGGGGCTTGAAGCTGCTGATAAAAAGGCGGAAGAAG TGAAACGGGGCTTGAAGCTGCTGATAAAAAGGCGGAAGAAG < 41bp 1 0.261565843713875 1 0.208027124404907 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593880 chrX:135593865 nonsynonymous SNV 0.536 1 6 hm5C_associated_SNPs_42229 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41319 DeepMRMD:1;iRNA_m5C:0.999536712157815 41320 chr2 220503475 220503475 1 + G A UCEC 220503474 + 220503454 220503494 41 GACCTCTCCCGATAAGCGCTCGTGGTTCATCCCACCCCTGG GACCTCTCCCGATAAGCGCTCATGGTTCATCCCACCCCTGG < 41bp 1 0.458684547012411 1 0.653154134750366 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503474 chr2:220503475 synonymous SNV . 0 22 hm5C_associated_SNPs_42231 0 0 0 0 1 Cytosol 1 0.500231643848695 0.693691730499268 0.99953671230261 hm5C_site_41320 DeepMRMD:0.693691730499268;iRNA_m5C:0.99953671230261 41321 chr19 39860392 39860392 1 + G A UCEC 39860373 + 39860353 39860393 41 CCACCTTCCCCTGCTTCAGCCAGGCAACACAGAGGCCAAGT CCACCTTCCCCTGCTTCAGCCAGGCAACACAGAGGCCAAAT < 41bp 1 0.48898794764508 1 0.678594589233398 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39860373 chr19:39860392 synonymous SNV . 0 40 hm5C_associated_SNPs_42232 0 0 1 0 1 Ribosome 1 0.500231644775817 0.642810821533204 0.999536710448365 hm5C_site_41321 DeepMRMD:0.642810821533204;iRNA_m5C:0.999536710448365 41322 chr19 39860392 39860392 1 + G A UCEC 39860388 + 39860368 39860408 41 TCAGCCAGGCAACACAGAGGCCAAGTCGGAGTACATGAGGC TCAGCCAGGCAACACAGAGGCCAAATCGGAGTACATGAGGC < 41bp 1 0.249183909071917 1 0.249624788761139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39860388 chr19:39860392 synonymous SNV . 0 25 hm5C_associated_SNPs_42233 0 0 1 0 1 Ribosome 1 0.500231804080955 1 0.99953639183809 hm5C_site_41322 DeepMRMD:1;iRNA_m5C:0.99953639183809 41323 chr8 73921219 73921219 1 + G T UCEC 73921233 + 73921213 73921253 41 CAGAGAGAAACGACGAGGAGCAGTTCGAATGCCAGGAACTG CAGAGATAAACGACGAGGAGCAGTTCGAATGCCAGGAACTG < 41bp 1 0.242887457641813 1 0.0787836611270905 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TERF1 ENSG00000147601 CDS Human protein_coding chr8:73921233 chr8:73921219 nonsynonymous SNV 0.002 1 7 hm5C_associated_SNPs_42234 0 0 1 0 0 Nucleus 1 0.50023164392408 1 0.999536712151839 hm5C_site_41323 DeepMRMD:1;iRNA_m5C:0.999536712151839 Multiple complex diseases 41324 chr6 44116553 44116553 1 + C A UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTAATC < 41bp 1 0.0942493911556688 1 0.724096298217773 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116553 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_42235 0 0 1 3 1 Ribosome 1 0.499453069262319 0.551807403564454 1 hm5C_site_41324 DeepMRMD:0.551807403564454;iRNA_m5C:1 41325 chrX 73042378 73042378 1 + C A UCEC 73042369 - 73042349 73042389 41 AGAATATAGGAGAAAGGTTACTGTTTATTTTTTTTCATGTA AGAATATAGGATAAAGGTTACTGTTTATTTTTTTTCATGTA < 41bp 1 0.0453259032056208 1 0.0718485713005066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042369 chrX:73042378 . . 0 12 hm5C_associated_SNPs_42236 0 0 1 1 0 unknown 1 0.500231212514367 1 0.999537574971265 hm5C_site_41325 DeepMRMD:1;iRNA_m5C:0.999537574971265 41326 chrX 10180620 10180620 1 + G T UCEC 10180611 + 10180591 10180631 41 TACCATCACCATGACTGGATCATCTTCAGGAACTGGTGCAG TACCATCACCATGACTGGATCATCTTCAGTAACTGGTGCAG < 41bp 1 0.161361704323969 1 0.0745160281658173 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10180611 chrX:10180620 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_42237 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643928901 1 0.999536712142197 hm5C_site_41326 DeepMRMD:1;iRNA_m5C:0.999536712142197 41327 chr2 228398426 228398426 1 + A T UCEC 228398425 + 228398405 228398445 41 GCTGGTTTACAGACTGCAGACAAATATGCAGCACTTGCTAA GCTGGTTTACAGACTGCAGACTAATATGCAGCACTTGCTAA < 41bp 1 0.447199311774735 1 0.0620908141136169 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228398425 chr2:228398426 stopgain 1.000 1 22 hm5C_associated_SNPs_42238 0 0 1 0 1 Cytosol 1 0.500231921235532 1 0.999536157528937 hm5C_site_41327 DeepMRMD:1;iRNA_m5C:0.999536157528937 41328 chr7 142458534 142458534 1 + T G UCEC 142458515 + 142458495 142458535 41 GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG GGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGGG < 41bp 1 0.269746123065061 1 0.27891081571579 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458515 chr7:142458534 nonsynonymous SNV 0.800 5 40 hm5C_associated_SNPs_42239 0 0 0 0 2 Cytosol 1 0.500266369803361 1 0.999467260393277 hm5C_site_41328 DeepMRMD:1;iRNA_m5C:0.999467260393277 41329 chr7 142458534 142458534 1 + T G UCEC 142458517 + 142458497 142458537 41 CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGG CTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGGGGG < 41bp 1 0.0977860855407777 1 0.0469091832637787 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458517 chr7:142458534 nonsynonymous SNV 0.800 5 38 hm5C_associated_SNPs_42240 0 0 0 0 2 Cytosol 1 0.50021377354786 1 0.999572452904281 hm5C_site_41329 DeepMRMD:1;iRNA_m5C:0.999572452904281 41330 chr7 142458534 142458534 1 + T G UCEC 142458518 + 142458498 142458538 41 TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGT TACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGGGGGT < 41bp 1 0.171015957534185 1 0.0630175173282623 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458518 chr7:142458534 nonsynonymous SNV 0.800 5 37 hm5C_associated_SNPs_42241 0 0 0 0 2 Cytosol 1 0.500217632458463 1 0.999564735083074 hm5C_site_41330 DeepMRMD:1;iRNA_m5C:0.999564735083074 41331 chr7 142458534 142458534 1 + T G UCEC 142458519 + 142458499 142458539 41 ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTG ACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGGGGGTG < 41bp 1 0.417424527551702 1 0.114547371864319 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458519 chr7:142458534 nonsynonymous SNV 0.800 5 36 hm5C_associated_SNPs_42242 0 0 0 0 2 Cytosol 1 0.500231642980637 1 0.999536714038727 hm5C_site_41331 DeepMRMD:1;iRNA_m5C:0.999536714038727 41332 chr7 142458534 142458534 1 + T G UCEC 142458521 + 142458501 142458541 41 CACTTCTGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGT CACTTCTGTGGTGGCTCCCTCATCAACGAACAGGGGGTGGT < 41bp 1 0.481455452672551 1 0.551734507083893 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458521 chr7:142458534 nonsynonymous SNV 0.800 5 34 hm5C_associated_SNPs_42243 0 0 0 0 2 Cytosol 1 0.500231639494543 0.896530985832214 0.999536721010914 hm5C_site_41332 DeepMRMD:0.896530985832214;iRNA_m5C:0.999536721010914 41333 chr7 142458534 142458534 1 + T G UCEC 142458527 + 142458507 142458547 41 TGTGGTGGCTCCCTCATCAACGAACAGTGGGTGGTATCAGC TGTGGTGGCTCCCTCATCAACGAACAGGGGGTGGTATCAGC < 41bp 1 0.451280204138987 1 0.511978983879089 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458527 chr7:142458534 nonsynonymous SNV 0.800 5 28 hm5C_associated_SNPs_42245 0 0 0 0 2 Cytosol 1 0.500231643921092 0.976042032241822 0.999536712157816 hm5C_site_41333 DeepMRMD:0.976042032241822;iRNA_m5C:0.999536712157816 41334 chr7 142458534 142458534 1 + T G UCEC 142458547 + 142458527 142458567 41 CGAACAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT CGAACAGGGGGTGGTATCAGCAGGCCACTGCTACAAGTCGT < 41bp 1 0.608134853458228 1 0.86400043964386 experiment 0.783730293083544 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458547 chr7:142458534 nonsynonymous SNV 0.800 5 8 hm5C_associated_SNPs_42246 0 0 0 0 2 Cytosol 1 0.500231643919542 0.27199912071228 0.999536712160917 hm5C_site_41334 DeepMRMD:0.27199912071228;iRNA_m5C:0.999536712160917 41335 chr7 142458534 142458534 1 + T G UCEC 142458551 + 142458531 142458571 41 CAGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT CAGGGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGT < 41bp 1 0.195899092583146 1 0.486309617757797 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458551 chr7:142458534 nonsynonymous SNV 0.800 5 4 hm5C_associated_SNPs_42247 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41335 DeepMRMD:1;iRNA_m5C:0.999536712157815 41336 chr7 142458534 142458534 1 + T G UCEC 142458552 + 142458532 142458572 41 AGTGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG AGGGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTG < 41bp 1 0.398688166445591 1 0.256227225065231 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458552 chr7:142458534 nonsynonymous SNV 0.800 5 3 hm5C_associated_SNPs_42248 0 0 0 0 2 Cytosol 1 0.500231632206011 1 0.999536735587979 hm5C_site_41336 DeepMRMD:1;iRNA_m5C:0.999536735587979 41337 chr7 142458534 142458534 1 + T G UCEC 142458554 + 142458534 142458574 41 TGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG GGGGTGGTATCAGCAGGCCACTGCTACAAGTCGTAAGTGTG < 41bp 1 0.310934414085213 1 0.142906874418259 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458554 chr7:142458534 nonsynonymous SNV 0.800 5 1 hm5C_associated_SNPs_42249 0 0 0 0 2 Cytosol 1 0.500218942624968 1 0.999562114750065 hm5C_site_41337 DeepMRMD:1;iRNA_m5C:0.999562114750065 41338 chr5 72189471 72189471 1 + C A UCEC 72189491 + 72189471 72189511 41 CTTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCAG ATTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCAG < 41bp 1 0.242719616074593 1 0.111446708440781 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72189491 chr5:72189471 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_42250 0 0 1 0 2 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_41338 DeepMRMD:1;iRNA_m5C:0.999536712157812 41339 chr9 2186185 2186185 1 + T C UCEC 2186182 + 2186162 2186202 41 GAAGAGAGTGAGGATGAAAGCAATGAAGAGGAGGAAGAGGA GAAGAGAGTGAGGATGAAAGCAACGAAGAGGAGGAAGAGGA < 41bp 1 0.554044616600447 1 0.387548714876175 experiment 0.891910766799105 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186182 chr9:2186185 synonymous SNV . 0 24 hm5C_associated_SNPs_42251 0 0 1 0 1 Nucleus 1 0.500231651920941 1 0.999536696158118 hm5C_site_41339 DeepMRMD:1;iRNA_m5C:0.999536696158118 41340 chr5 142264893 142264893 1 + G A UCEC 142264910 + 142264890 142264930 41 ACAGAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT ACAAAAAAGTATTGTGGCATCTTAGAAAAACACTTGAATTT < 41bp 1 0.100934098078593 1 0.431180119514465 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142264910 chr5:142264893 nonsynonymous SNV 0.999 2 4 hm5C_associated_SNPs_42252 0 0 0 0 2 Nucleus 1 0.500231771681457 1 0.999536456637086 hm5C_site_41340 DeepMRMD:1;iRNA_m5C:0.999536456637086 41341 chr13 92051394 92051394 1 + G T UCEC 92051411 + 92051391 92051431 41 GAAGAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC GAATAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC < 41bp 1 0.49610265014895 1 0.747032642364502 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC5 ENSG00000179399 CDS Human protein_coding chr13:92051411 chr13:92051394 stopgain 1.000 0 4 hm5C_associated_SNPs_42253 0 0 0 0 1 Nucleus 1 0.500231643920914 0.505934715270996 0.999536712158172 hm5C_site_41341 DeepMRMD:0.505934715270996;iRNA_m5C:0.999536712158172 41342 chr2 192141642 192141642 1 + A C UCEC 192141649 + 192141629 192141669 41 AAATGGAGGTGAAAACCTCACTTCTGGACAATATGATTGGA AAATGGAGGTGAACACCTCACTTCTGGACAATATGATTGGA < 41bp 1 0.243276958170409 1 0.216290175914764 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141649 chr2:192141642 nonsynonymous SNV 0.969 2 14 hm5C_associated_SNPs_42254 0 0 1 0 1 Nucleus 1 0.500231643921084 1 0.999536712157832 hm5C_site_41342 DeepMRMD:1;iRNA_m5C:0.999536712157832 41343 chr19 34717316 34717316 1 + A G UCEC 34717318 + 34717298 34717338 41 TTTTTTACCTTTCAGAAAACCACAGCTTTTGGACCCTAAAA TTTTTTACCTTTCAGAAAGCCACAGCTTTTGGACCCTAAAA < 41bp 1 0.190499533387477 1 0.305062413215637 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSM14A ENSG00000257103 CDS Human protein_coding chr19:34717318 chr19:34717316 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_42255 0 0 1 0 2 Cytosol 1 0.500231646752454 1 0.999536706495091 hm5C_site_41343 DeepMRMD:1;iRNA_m5C:0.999536706495091 41344 chr11 65267165 65267165 1 + G T UCEC 65267145 + 65267125 65267165 41 TGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAG TGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAT < 41bp 1 0.644361233487318 1 0.827397048473358 experiment 0.711277533025365 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65267145 chr11:65267165 . . 0 41 hm5C_associated_SNPs_42256 0 0 1 1 0 unknown 1 0.500231643921287 0.345205903053284 0.999536712157425 hm5C_site_41344 DeepMRMD:0.345205903053284;iRNA_m5C:0.999536712157425 41345 chr5 177633861 177633861 1 + G T UCEC 177633841 + 177633821 177633861 41 TCTTCGTTGGGGGTCTGAATCCTGAAGCCACTGAGGAAAAG TCTTCGTTGGGGGTCTGAATCCTGAAGCCACTGAGGAAAAT < 41bp 1 0.577811465635747 1 0.274541735649109 experiment 0.844377068728505 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633841 chr5:177633861 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_42258 0 0 1 0 1 Cytosol 1 0.500231643579235 1 0.999536712841531 hm5C_site_41345 DeepMRMD:1;iRNA_m5C:0.999536712841531 41346 chr5 177633861 177633861 1 + G T UCEC 177633848 + 177633828 177633868 41 TGGGGGTCTGAATCCTGAAGCCACTGAGGAAAAGATCAGGG TGGGGGTCTGAATCCTGAAGCCACTGAGGAAAATATCAGGG < 41bp 1 0.135185074519531 1 0.348401814699173 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633848 chr5:177633861 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_42259 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_41346 DeepMRMD:1;iRNA_m5C:0.999536712157814 41347 chr5 177633861 177633861 1 + G T UCEC 177633849 + 177633829 177633869 41 GGGGGTCTGAATCCTGAAGCCACTGAGGAAAAGATCAGGGA GGGGGTCTGAATCCTGAAGCCACTGAGGAAAATATCAGGGA < 41bp 1 0.441065174919391 1 0.370948761701584 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633849 chr5:177633861 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_42260 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_41347 DeepMRMD:1;iRNA_m5C:0.999536712157814 41348 chr5 177633861 177633861 1 + G T UCEC 177633851 + 177633831 177633871 41 GGGTCTGAATCCTGAAGCCACTGAGGAAAAGATCAGGGAGT GGGTCTGAATCCTGAAGCCACTGAGGAAAATATCAGGGAGT < 41bp 1 0.467276404710354 1 0.375456094741821 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177633851 chr5:177633861 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_42261 0 0 1 0 1 Cytosol 1 0.500231643930733 1 0.999536712138535 hm5C_site_41348 DeepMRMD:1;iRNA_m5C:0.999536712138535 41349 chr20 21362684 21362684 1 + A C UCEC 21362679 + 21362659 21362699 41 GTCCTCCTCCCCTTTTCCAGCAGCAAAGGTTTGACAGGTAA GTCCTCCTCCCCTTTTCCAGCAGCACAGGTTTGACAGGTAA < 41bp 1 0.551050166423136 1 0.297279715538025 experiment 0.897899667153728 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRN2 ENSG00000088930 CDS Human protein_coding chr20:21362679 chr20:21362684 nonsynonymous SNV 0.999 0 26 hm5C_associated_SNPs_42263 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41349 DeepMRMD:1;iRNA_m5C:0.999536712157815 41350 chrX 123229267 123229267 1 + T G UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATGTCT < 41bp 1 0.502571560694292 1 0.532979965209961 experiment 0.994856878611416 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229267 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_42264 0 0 1 0 2 Nucleus 1 0.500231643921396 0.934040069580078 0.999536712157207 hm5C_site_41350 DeepMRMD:0.934040069580078;iRNA_m5C:0.999536712157207 41351 chr5 154251380 154251380 1 + C G UCEC 154251388 + 154251368 154251408 41 TCTGAACCTTTTCTTCCCATCCATTTATGATGTGAAATACC TCTGAACCTTTTGTTCCCATCCATTTATGATGTGAAATACC < 41bp 1 0.0523058154107125 1 0.12595322728157 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154251388 chr5:154251380 nonsynonymous SNV 0.998 1 13 hm5C_associated_SNPs_42265 0 0 1 0 2 Ribosome 1 0.500231643921155 1 0.99953671215769 hm5C_site_41351 DeepMRMD:1;iRNA_m5C:0.99953671215769 41352 chr17 41348562 41348562 1 + G A UCEC 41348551 + 41348531 41348571 41 ACAGTCCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAG ACAGTCCTTTAATAGAGAAGCCAGGCTTGGGACAGATAGAG < 41bp 1 0.304497320408322 1 0.177854955196381 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348551 chr17:41348562 synonymous SNV . 0 32 hm5C_associated_SNPs_42266 0 0 1 0 2 Cytosol 1 0.500231643878417 1 0.999536712243165 hm5C_site_41352 DeepMRMD:1;iRNA_m5C:0.999536712243165 41353 chr17 41348562 41348562 1 + G A UCEC 41348556 + 41348536 41348576 41 CCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGA CCTTTAATAGAGAAGCCAGGCTTGGGACAGATAGAGGAAGA < 41bp 1 0.55258282167663 1 0.0913607478141785 experiment 0.89483435664674 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348556 chr17:41348562 synonymous SNV . 0 27 hm5C_associated_SNPs_42267 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41353 DeepMRMD:1;iRNA_m5C:0.999536712157815 41354 chr17 41348562 41348562 1 + G A UCEC 41348563 + 41348543 41348583 41 TAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGAGAATGAA TAGAGAAGCCAGGCTTGGGACAGATAGAGGAAGAGAATGAA < 41bp 1 0.339159509056044 1 0.273230373859406 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41348563 chr17:41348562 synonymous SNV . 0 20 hm5C_associated_SNPs_42268 0 0 1 0 2 Cytosol 1 0.500231643951514 1 0.999536712096972 hm5C_site_41354 DeepMRMD:1;iRNA_m5C:0.999536712096972 41355 chr14 62205000 62205000 1 + C A UCEC 62204993 + 62204973 62205013 41 AAGTTGCATTAAAATTAGAACCAAATCCAGAGTCACTGGAA AAGTTGCATTAAAATTAGAACCAAATCAAGAGTCACTGGAA < 41bp 1 0.239875470553044 1 0.249249249696732 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HIF1A ENSG00000100644 CDS Human protein_coding chr14:62204993 chr14:62205000 nonsynonymous SNV 1.000 0 28 hm5C_associated_SNPs_42269 0 0 1 0 1 Cytosol 1 0.500231644209099 1 0.999536711581801 hm5C_site_41355 DeepMRMD:1;iRNA_m5C:0.999536711581801 41356 chr16 31196313 31196313 1 + G A UCEC 31196312 + 31196292 31196332 41 AGTGGTGGTGGCAGTGGTGGCGGTTATGGCAATCAAGACCA AGTGGTGGTGGCAGTGGTGGCAGTTATGGCAATCAAGACCA < 41bp 1 0.54985592679863 1 0.439034640789032 experiment 0.900288146402739 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control FUS ENSG00000089280 CDS Human protein_coding chr16:31196312 chr16:31196313 nonsynonymous SNV 0.920 3 22 hm5C_associated_SNPs_42270 0 0 1 0 1 Cytosol 1 0.5002316439211 1 0.999536712157799 hm5C_site_41356 DeepMRMD:1;iRNA_m5C:0.999536712157799 41357 chr11 129996720 129996720 1 + G A UCEC 129996707 + 129996687 129996727 41 GAGCAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGT GAGCAGCTGGAGATTCGGCACCGCAACCGAATGAACAGGGT < 41bp 1 0.417227240365468 1 0.168643444776535 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:129996707 chr11:129996720 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_42271 0 0 1 0 0 Endoplasmic reticulum 1 0.500231625342944 1 0.999536749314111 hm5C_site_41357 DeepMRMD:1;iRNA_m5C:0.999536749314111 41358 chr11 129996720 129996720 1 + G A UCEC 129996710 + 129996690 129996730 41 CAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAA CAGCTGGAGATTCGGCACCGCAACCGAATGAACAGGGTAAA < 41bp 1 0.176324481891467 1 0.109046846628189 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:129996710 chr11:129996720 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_42272 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643941321 1 0.999536712117359 hm5C_site_41358 DeepMRMD:1;iRNA_m5C:0.999536712117359 41359 chr18 7955212 7955212 1 + G T UCEC 7955214 + 7955194 7955234 41 ACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTG ACTCCATCAATGGGGATGTGCCCATTGTGGCCCGAGAGGTG < 41bp 1 0.113935862130295 1 0.13978785276413 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955214 chr18:7955212 nonsynonymous SNV 0.895 4 19 hm5C_associated_SNPs_42273 0 0 0 0 1 Nucleus 1 0.500228298433342 1 0.999543403133315 hm5C_site_41359 DeepMRMD:1;iRNA_m5C:0.999543403133315 41360 chr18 7955212 7955212 1 + G T UCEC 7955215 + 7955195 7955235 41 CTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGG CTCCATCAATGGGGATGTGCCCATTGTGGCCCGAGAGGTGG < 41bp 1 0.108594638180163 1 0.0633066892623901 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955215 chr18:7955212 nonsynonymous SNV 0.895 4 18 hm5C_associated_SNPs_42274 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41360 DeepMRMD:1;iRNA_m5C:0.999536712157815 41361 chr18 7955212 7955212 1 + G T UCEC 7955216 + 7955196 7955236 41 TCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGA TCCATCAATGGGGATGTGCCCATTGTGGCCCGAGAGGTGGA < 41bp 1 0.145126987480844 1 0.1586934030056 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955216 chr18:7955212 nonsynonymous SNV 0.895 4 17 hm5C_associated_SNPs_42275 0 0 0 0 1 Nucleus 1 0.500230248261782 1 0.999539503476436 hm5C_site_41361 DeepMRMD:1;iRNA_m5C:0.999539503476436 41362 chr18 7955212 7955212 1 + G T UCEC 7955224 + 7955204 7955244 41 TGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCA TGGGGATGTGCCCATTGTGGCCCGAGAGGTGGAGTACTGCA < 41bp 1 0.522849807897886 1 0.124780505895615 experiment 0.954300384204227 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955224 chr18:7955212 nonsynonymous SNV 0.895 4 9 hm5C_associated_SNPs_42276 0 0 0 0 1 Nucleus 1 0.500231643921807 1 0.999536712156385 hm5C_site_41362 DeepMRMD:1;iRNA_m5C:0.999536712156385 41363 chr18 7955212 7955212 1 + G T UCEC 7955225 + 7955205 7955245 41 GGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCAC GGGGATGTGCCCATTGTGGCCCGAGAGGTGGAGTACTGCAC < 41bp 1 0.273371690641618 1 0.441462367773056 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955225 chr18:7955212 nonsynonymous SNV 0.895 4 8 hm5C_associated_SNPs_42277 0 0 0 0 1 Nucleus 1 0.500231641680073 1 0.999536716639854 hm5C_site_41363 DeepMRMD:1;iRNA_m5C:0.999536716639854 41364 chr18 7955212 7955212 1 + G T UCEC 7955226 + 7955206 7955246 41 GGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACG GGGATGTGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACG < 41bp 1 0.643303157677311 1 0.501182079315186 experiment 0.713393684645378 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955226 chr18:7955212 nonsynonymous SNV 0.895 4 7 hm5C_associated_SNPs_42278 0 0 0 0 1 Nucleus 1 0.5002316439253 0.997635841369628 0.999536712149401 hm5C_site_41364 DeepMRMD:0.997635841369628;iRNA_m5C:0.999536712149401 41365 chr1 161748036 161748036 1 + T C UCEC 161748056 + 161748036 161748076 41 TCTGCTCTCTTTGCTGAACTCGGTTATTTCACAGACACTGA CCTGCTCTCTTTGCTGAACTCGGTTATTTCACAGACACTGA < 41bp 1 0.313871535762188 1 0.204070746898651 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161748056 chr1:161748036 nonsynonymous SNV 0.863 3 1 hm5C_associated_SNPs_42279 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643718978 1 0.999536712562045 hm5C_site_41365 DeepMRMD:1;iRNA_m5C:0.999536712562045 41366 chrX 57515251 57515251 1 + A G UCEC 57515266 + 57515246 57515286 41 AAAGGACTCCCTTTAGGCATCCAGGTTGTGGCTGGACCCTT AAAGGGCTCCCTTTAGGCATCCAGGTTGTGGCTGGACCCTT < 41bp 1 0.563649470865872 1 0.772432386875153 experiment 0.872701058268257 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57515266 chrX:57515251 synonymous SNV . 0 6 hm5C_associated_SNPs_42280 0 0 0 0 1 nucleus 1 0.500231643921092 0.455135226249694 0.999536712157815 hm5C_site_41366 DeepMRMD:0.455135226249694;iRNA_m5C:0.999536712157815 41367 chr11 308255 308255 1 + G A UCEC 308239 + 308219 308259 41 TCCTGTCAACAGCGGCCAGCCTCCCAACTACGAGATGCTCA TCCTGTCAACAGCGGCCAGCCTCCCAACTACGAGATACTCA < 41bp 1 0.330527086029503 1 0.283999353647232 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IFITM2 ENSG00000185201 CDS Human protein_coding chr11:308239 chr11:308255 nonsynonymous SNV 0.003 1 37 hm5C_associated_SNPs_42281 0 0 1 0 0 Endoplasmic reticulum 1 0.500230005888715 1 0.99953998822257 hm5C_site_41367 DeepMRMD:1;iRNA_m5C:0.99953998822257 41368 chr6 161470203 161470203 1 + C A UCEC 161470199 + 161470179 161470219 41 CAGATATTATTAATGAAATCCTTACTTTCAAAGTCGACTAT CAGATATTATTAATGAAATCCTTAATTTCAAAGTCGACTAT < 41bp 1 0.223251024962476 1 0.156533241271973 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161470199 chr6:161470203 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_42282 0 0 1 0 0 Cytosol 1 0.500231643929252 1 0.999536712141496 hm5C_site_41368 DeepMRMD:1;iRNA_m5C:0.999536712141496 41369 chr5 149206256 149206256 1 + C T UCEC 149206241 + 149206221 149206261 41 CCCTCCTCACTCCAGATTGACAGTGAGAATGAGGCCCTCCT CCCTCCTCACTCCAGATTGACAGTGAGAATGAGGCTCTCCT < 41bp 1 0.194060863045016 1 0.0375402271747589 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149206241 chr5:149206256 synonymous SNV . 0 36 hm5C_associated_SNPs_42283 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41369 DeepMRMD:1;iRNA_m5C:0.999536712157815 41370 chrX 64956684 64956684 1 + G A UCEC 64956664 + 64956644 64956684 41 TCTCCTTCCCTAGTGCTATGCTGGAAAATGAGAAGAAGAAG TCTCCTTCCCTAGTGCTATGCTGGAAAATGAGAAGAAGAAA < 41bp 1 0.675573342862956 1 0.668651461601257 experiment 0.648853314274088 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956664 chrX:64956684 synonymous SNV . 0 41 hm5C_associated_SNPs_42284 0 0 1 0 1 Ribosome 1 0.500231643961237 0.662697076797486 0.999536712077526 hm5C_site_41370 DeepMRMD:0.662697076797486;iRNA_m5C:0.999536712077526 41371 chrX 64956684 64956684 1 + G A UCEC 64956685 + 64956665 64956705 41 TGGAAAATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAG TGGAAAATGAGAAGAAGAAACGTGAAATGGCAGAGAAGGAG < 41bp 1 0.590231050225396 1 0.491238653659821 experiment 0.819537899549208 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956685 chrX:64956684 synonymous SNV . 0 20 hm5C_associated_SNPs_42285 0 0 1 0 1 Ribosome 1 0.500231644177984 1 0.999536711644031 hm5C_site_41371 DeepMRMD:1;iRNA_m5C:0.999536711644031 41372 chrX 64956684 64956684 1 + G A UCEC 64956695 + 64956675 64956715 41 GAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAGAAGA GAAGAAGAAACGTGAAATGGCAGAGAAGGAGAAAGAGAAGA < 41bp 1 0.475967106842268 1 0.380179107189178 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956695 chrX:64956684 synonymous SNV . 0 10 hm5C_associated_SNPs_42286 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_41372 DeepMRMD:1;iRNA_m5C:0.999536712157818 41373 chr15 78841254 78841254 1 + A G UCEC 78841245 + 78841225 78841265 41 AAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAAGAA AAGAAGAAGCCAAAGCTGAGCGTGAGAAGGAAGAAAAAGAA < 41bp 1 0.667797231305837 1 0.4283167719841 experiment 0.664405537388325 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78841245 chr15:78841254 nonsynonymous SNV 0.998 1 30 hm5C_associated_SNPs_42287 0 0 1 0 0 Ribosome 1 0.500238616610113 1 0.999522766779775 hm5C_site_41373 DeepMRMD:1;iRNA_m5C:0.999522766779775 41374 chr9 79996923 79996923 1 + C T UCEC 79996920 + 79996900 79996940 41 AGACTTCTGAAGTGGAGAGTCTGCGACCTCCTCGGTTCTTC AGACTTCTGAAGTGGAGAGTCTGTGACCTCCTCGGTTCTTC < 41bp 1 0.257815881603681 1 0.37711375951767 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS13A ENSG00000197969 CDS Human protein_coding chr9:79996920 chr9:79996923 stopgain 0.980 1 24 hm5C_associated_SNPs_42288 0 0 1 0 2 Nucleus 1 0.500231646222297 1 0.999536707555406 hm5C_site_41374 DeepMRMD:1;iRNA_m5C:0.999536707555406 41375 chr6 18213974 18213974 1 + C T UCEC 18213957 + 18213937 18213977 41 TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGTGAG < 41bp 1 0.413399859580966 1 0.247388541698456 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213957 chr6:18213974 stopgain 0.958 0 38 hm5C_associated_SNPs_42289 0 0 1 0 2 Cytosol 1 0.500231643921086 1 0.999536712157828 hm5C_site_41375 DeepMRMD:1;iRNA_m5C:0.999536712157828 41376 chr6 18213974 18213974 1 + C T UCEC 18213959 + 18213939 18213979 41 ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAGGG ACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGTGAGGG < 41bp 1 0.434244310918233 1 0.515890896320343 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213959 chr6:18213974 stopgain 0.958 0 36 hm5C_associated_SNPs_42290 0 0 1 0 2 Cytosol 1 0.500231643920377 0.968218207359314 0.999536712159245 hm5C_site_41376 DeepMRMD:0.968218207359314;iRNA_m5C:0.999536712159245 41377 chr11 119050825 119050825 1 + C T UCEC 119050815 + 119050795 119050835 41 CGCTTCTCCGCTGAGGTGCTCAGCTCCCTGCGTCAGCTCAA CGCTTCTCCGCTGAGGTGCTCAGCTCCCTGTGTCAGCTCAA < 41bp 1 0.257439137234531 1 0.468572437763214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119050815 chr11:119050825 nonsynonymous SNV 0.912 2 31 hm5C_associated_SNPs_42291 0 0 0 0 0 exosome 1 0.500231636186666 1 0.999536727626667 hm5C_site_41377 DeepMRMD:1;iRNA_m5C:0.999536727626667 41378 chr19 18975039 18975039 1 + G A UCEC 18975023 + 18975003 18975043 41 ATGTATGATGCCCGGGAGGCCATCATCCCAGGCTCCGTCTA ATGTATGATGCCCGGGAGGCCATCATCCCAGGCTCCATCTA < 41bp 1 0.477849467455284 1 0.0728333592414856 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18975023 chr19:18975039 nonsynonymous SNV 0.878 2 37 hm5C_associated_SNPs_42292 0 0 1 0 1 Nucleus 1 0.500234822758847 1 0.999530354482305 hm5C_site_41378 DeepMRMD:1;iRNA_m5C:0.999530354482305 41379 chr21 30411818 30411818 1 + G T UCEC 30411804 + 30411784 30411824 41 CTTTTTGTTTTTCTCTAGAGCAGTGCGGTTTAAAGGCTATC CTTTTTGTTTTTCTCTAGAGCAGTGCGGTTTAAATGCTATC < 41bp 1 0.268907452531764 1 0.148191779851913 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP16 ENSG00000156256 CDS Human protein_coding chr21:30411804 chr21:30411818 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_42293 0 0 1 0 2 Ribosome 1 0.500231643885223 1 0.999536712229555 hm5C_site_41379 DeepMRMD:1;iRNA_m5C:0.999536712229555 41380 chr2 114688909 114688909 1 + G T UCEC 114688918 + 114688898 114688938 41 TCCAGAAAACAGGGAATATACTGCTGAAATAATGTTTGAGT TCCAGAAAACATGGAATATACTGCTGAAATAATGTTTGAGT < 41bp 1 0.650058020560099 1 0.107877045869827 experiment 0.699883958879803 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114688918 chr2:114688909 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_42294 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_41380 DeepMRMD:1;iRNA_m5C:0.999536712157815 41381 chr17 41345509 41345509 1 + C T UCEC 41345492 + 41345472 41345512 41 TGCCCCAGCCTTGGAGGGAACGTATACTTCCCATTGGCGTC TGCCCCAGCCTTGGAGGGAACGTATACTTCCCATTGGTGTC < 41bp 1 0.217913009273439 1 0.114759981632233 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41345492 chr17:41345509 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_42295 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41381 DeepMRMD:1;iRNA_m5C:0.999536712157815 41382 chrX 73046580 73046580 1 + G A UCEC 73046568 - 73046548 73046588 41 GACCCAAGCGAAAAAGGTATCTCAAGACTAACGGCCGGAAT GACCCAAGTGAAAAAGGTATCTCAAGACTAACGGCCGGAAT < 41bp 1 0.697091320102448 1 0.331723749637604 experiment 0.605817359795104 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046568 chrX:73046580 . . 0 9 hm5C_associated_SNPs_42296 0 0 1 1 0 unknown 1 0.500231644579569 1 0.999536710840862 hm5C_site_41382 DeepMRMD:1;iRNA_m5C:0.999536710840862 41383 chrX 73046580 73046580 1 + G A UCEC 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGATAGAGGACCCAAGTGAAAAAGGTATCTCA < 41bp 1 0.109097435776503 1 0.259132981300354 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046580 . . 0 26 hm5C_associated_SNPs_42297 0 0 1 1 0 unknown 1 0.500231643876072 1 0.999536712247856 hm5C_site_41383 DeepMRMD:1;iRNA_m5C:0.999536712247856 41384 chr13 115091203 115091203 1 + C G UCEC 115091186 + 115091166 115091206 41 AAGAAGCTCAAGAAAGACAACCAAGAGAGCTCAGACGCTGA AAGAAGCTCAAGAAAGACAACCAAGAGAGCTCAGACGGTGA < 41bp 1 0.130201317015194 1 0.358097076416016 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115091186 chr13:115091203 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_42298 0 0 1 0 0 nucleus 1 0.500231692831004 1 0.999536614337991 hm5C_site_41384 DeepMRMD:1;iRNA_m5C:0.999536614337991 41385 chr7 44741197 44741197 1 + T G UCEC 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCCGAGGCCAGATCCAGCTGTGATGAGATGCTTC < 41bp 1 0.185182610320938 1 0.455376803874969 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741197 nonsynonymous SNV 0.999 2 27 hm5C_associated_SNPs_42299 0 0 1 0 2 Nucleus 1 0.500231586248448 1 0.999536827503104 hm5C_site_41385 DeepMRMD:1;iRNA_m5C:0.999536827503104 41386 chr20 37580974 37580974 1 + A G UCEC 37580957 + 37580937 37580977 41 TGGGCACCCCCCACCTGGAACTGTACTTGAGTGACTCACTT TGGGCACCCCCCACCTGGAACTGTACTTGAGTGACTCGCTT < 41bp 1 0.32970824864089 1 0.107550859451294 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37580957 chr20:37580974 synonymous SNV . 0 38 hm5C_associated_SNPs_42300 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41386 DeepMRMD:1;iRNA_m5C:0.999536712157815 41387 chr12 1517357 1517357 1 + G A UCEC 1517370 + 1517350 1517390 41 CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAA CGAGGATAACCACTTCAAATCCTCCCATTCCAATCAAACAA < 41bp 1 0.0243435127300527 1 0.101734936237335 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERC1 ENSG00000082805 CDS Human protein_coding chr12:1517370 chr12:1517357 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_42301 0 0 1 0 2 chromatin 1 0.500231643803783 1 0.999536712392435 hm5C_site_41387 DeepMRMD:1;iRNA_m5C:0.999536712392435 41388 chr7 2419058 2419058 1 + G A UCEC 2419038 + 2419018 2419058 41 TGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAACG TGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAACA < 41bp 1 0.444024365945681 1 0.0538598895072937 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419038 chr7:2419058 nonsynonymous SNV 0.996 3 41 hm5C_associated_SNPs_42302 0 0 1 0 2 Ribosome 1 0.50023164398452 1 0.999536712030961 hm5C_site_41388 DeepMRMD:1;iRNA_m5C:0.999536712030961 41389 chr2 233674449 233674449 1 + G A UCEC 233674436 + 233674416 233674456 41 CACTTCATTCCTAGGGAGAGCTGGACCAGGAACGACTGACC CACTTCATTCCTAGGGAGAGCTGGACCAGGAACAACTGACC < 41bp 1 0.503607594642972 1 0.589686989784241 experiment 0.992784810714057 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233674436 chr2:233674449 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_42304 0 0 1 0 2 Nucleus 1 0.500231643921092 0.820626020431518 0.999536712157815 hm5C_site_41389 DeepMRMD:0.820626020431518;iRNA_m5C:0.999536712157815 41390 chr2 233674449 233674449 1 + G A UCEC 233674441 + 233674421 233674461 41 CATTCCTAGGGAGAGCTGGACCAGGAACGACTGACCAGGCA CATTCCTAGGGAGAGCTGGACCAGGAACAACTGACCAGGCA < 41bp 1 0.248580487618402 1 0.306059718132019 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233674441 chr2:233674449 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_42305 0 0 1 0 2 Nucleus 1 0.500231429112925 1 0.99953714177415 hm5C_site_41390 DeepMRMD:1;iRNA_m5C:0.99953714177415 41391 chr3 49758470 49758470 1 + C T UCEC 49758471 + 49758451 49758491 41 AGCCCACCAGTGAGGAGGACCTCTGCCCCATCTGCTATGCC AGCCCACCAGTGAGGAGGATCTCTGCCCCATCTGCTATGCC < 41bp 1 0.149155016941866 1 0.149001151323318 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49758471 chr3:49758470 synonymous SNV . 0 20 hm5C_associated_SNPs_42306 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41391 DeepMRMD:1;iRNA_m5C:0.999536712157815 41392 chr17 4923887 4923887 1 + G A UCEC 4923870 + 4923850 4923890 41 TGGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACCGCCC TGGAACGGGAACGAGGGGTCCCCCCACCCCCAGGACCACCC < 41bp 1 0.129605444230268 1 0.0812363028526306 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4923870 chr17:4923887 synonymous SNV . 0 38 hm5C_associated_SNPs_42307 0 0 1 0 1 Ribosome 1 0.500232104235604 1 0.999535791528792 hm5C_site_41392 DeepMRMD:1;iRNA_m5C:0.999535791528792 41393 chr3 196304327 196304327 1 + C T UCEC 196304336 + 196304316 196304356 41 CTTTTTAGATACGTGCTTTTCAACATGCCTTCAGCACTAAT CTTTTTAGATATGTGCTTTTCAACATGCCTTCAGCACTAAT < 41bp 1 0.577540780961039 1 0.622923314571381 experiment 0.844918438077921 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO45 ENSG00000174013 CDS Human protein_coding chr3:196304336 chr3:196304327 nonsynonymous SNV 0.990 4 12 hm5C_associated_SNPs_42308 0 0 0 0 1 Cytosol 1 0.500231643959663 0.754153370857238 0.999536712080675 hm5C_site_41393 DeepMRMD:0.754153370857238;iRNA_m5C:0.999536712080675 41394 chr17 15929903 15929903 1 + G A UCEC 15929902 + 15929882 15929922 41 CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATATT CTACCCTGGATGCACAGGGCCACTTTGATGAGGCCTATATT < 41bp 1 0.139737762823942 1 0.0243609249591827 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15929902 chr17:15929903 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_42309 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41394 DeepMRMD:1;iRNA_m5C:0.999536712157815 41395 chr12 109637345 109637345 1 + C T UCEC 109637339 + 109637319 109637359 41 GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT GGCCACGTTGAGGCTGGGAGCAGCTATGCTGAGATGGAGGT < 41bp 1 0.288025255708515 1 0.575288116931915 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109637339 chr12:109637345 synonymous SNV . 0 27 hm5C_associated_SNPs_42310 0 0 1 0 1 Nucleus 1 0.500231644669603 0.84942376613617 0.999536710660795 hm5C_site_41395 DeepMRMD:0.84942376613617;iRNA_m5C:0.999536710660795 41396 chr15 66777502 66777502 1 + C T UCEC 66777521 + 66777501 66777541 41 GCCAAGGACCCCCGGGAGGCCCCTTAGCTGTGAGTAGCCTG GTCAAGGACCCCCGGGAGGCCCCTTAGCTGTGAGTAGCCTG < 41bp 1 0.151963513627113 1 0.114430218935013 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66777521 chr15:66777502 nonsynonymous SNV 0.979 1 2 hm5C_associated_SNPs_42311 0 0 1 0 1 Ribosome 1 0.500231643922128 1 0.999536712155743 hm5C_site_41396 DeepMRMD:1;iRNA_m5C:0.999536712155743 41397 chr10 75529149 75529149 1 + C T UCEC 75529135 + 75529115 75529155 41 TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCAT TTTACACCAGCTGTGCAGGGCAGCGTCGGCTCCGTATCCAT < 41bp 1 0.504712534394928 1 0.0882059037685394 experiment 0.990574931210143 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529135 chr10:75529149 synonymous SNV . 0 35 hm5C_associated_SNPs_42312 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41397 DeepMRMD:1;iRNA_m5C:0.999536712157815 41398 chr10 75529149 75529149 1 + C T UCEC 75529138 + 75529118 75529158 41 ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGCATCCATAAT ACACCAGCTGTGCAGGGCAGCGTCGGCTCCGTATCCATAAT < 41bp 1 0.455252246171255 1 0.262603431940079 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529138 chr10:75529149 synonymous SNV . 0 32 hm5C_associated_SNPs_42313 0 0 1 0 2 Nucleus 1 0.500237222608018 1 0.999525554783963 hm5C_site_41398 DeepMRMD:1;iRNA_m5C:0.999525554783963 41399 chr10 75529149 75529149 1 + C T UCEC 75529146 + 75529126 75529166 41 TGTGCAGGGCAGCGTCGGCTCCGCATCCATAATCTGGCCCT TGTGCAGGGCAGCGTCGGCTCCGTATCCATAATCTGGCCCT < 41bp 1 0.574930075181395 1 0.0490468144416809 experiment 0.850139849637209 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529146 chr10:75529149 synonymous SNV . 0 24 hm5C_associated_SNPs_42314 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41399 DeepMRMD:1;iRNA_m5C:0.999536712157815 41400 chr1 6692462 6692462 1 + G A UCEC 6692470 + 6692450 6692490 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCTGGGA GGTCCTCCCTGAAGCGGGGGCCGGAGAGGACAGTCCTGGGA < 41bp 1 0.663986538610059 1 0.576979100704193 experiment 0.672026922779881 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692470 chr1:6692462 synonymous SNV . 0 13 hm5C_associated_SNPs_42315 0 0 1 0 3 Ribosome 1 0.500231725723915 0.846041798591614 0.99953654855217 hm5C_site_41400 DeepMRMD:0.846041798591614;iRNA_m5C:0.99953654855217 41401 chr2 32824931 32824931 1 + C T UCEC 32824918 + 32824898 32824938 41 TCTTGTGAATCTAGAGACAACTGGTGGTCATAGCGTGCGAT TCTTGTGAATCTAGAGACAACTGGTGGTCATAGTGTGCGAT < 41bp 1 0.216585688402764 1 0.379756271839142 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824918 chr2:32824931 synonymous SNV . 0 34 hm5C_associated_SNPs_42316 0 0 1 0 1 Nucleus 1 0.500231645523639 1 0.999536708952721 hm5C_site_41401 DeepMRMD:1;iRNA_m5C:0.999536708952721 41402 chr12 9070341 9070341 1 + G A UCEC 9070333 + 9070313 9070353 41 GGGAGTTCTAGCTCAGGGGGCAGCTCTCGGCCCCAGATAGC GGGAGTTCTAGCTCAGGGGGCAGCTCTCAGCCCCAGATAGC < 41bp 1 0.197131186086904 1 0.169447511434555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHC1 ENSG00000111752 CDS Human protein_coding chr12:9070333 chr12:9070341 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_42317 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_41402 DeepMRMD:1;iRNA_m5C:0.999536712157815 41403 chr5 154173687 154173687 1 + G A UCEC 154173686 + 154173666 154173706 41 TTGACTACCAGTTTGGCTACCGAAAGTTTGATGGTGTGGAG TTGACTACCAGTTTGGCTACCAAAAGTTTGATGGTGTGGAG < 41bp 1 0.541807779890474 1 0.547685742378235 experiment 0.916384440219052 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154173686 chr5:154173687 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_42320 0 0 1 0 1 Cytosol 1 0.500231645215619 0.90462851524353 0.999536709568762 hm5C_site_41403 DeepMRMD:0.90462851524353;iRNA_m5C:0.999536709568762 41404 chr8 145166601 145166601 1 + G A UCEC 145166598 + 145166578 145166618 41 TGAGGCTGGGGCTAGTGGTCCCAGCAGCCCAGCCCCCACCC TGAGGCTGGGGCTAGTGGTCCCAACAGCCCAGCCCCCACCC < 41bp 1 0.101877375550067 1 0.201917678117752 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166598 chr8:145166601 nonsynonymous SNV 0.157 1 24 hm5C_associated_SNPs_42321 0 0 0 0 2 chromatin 1 0.500231644018436 1 0.999536711963128 hm5C_site_41404 DeepMRMD:1;iRNA_m5C:0.999536711963128 41405 chr8 145166601 145166601 1 + G A UCEC 145166599 + 145166579 145166619 41 GAGGCTGGGGCTAGTGGTCCCAGCAGCCCAGCCCCCACCCT GAGGCTGGGGCTAGTGGTCCCAACAGCCCAGCCCCCACCCT < 41bp 1 0.619139450286817 1 0.353998124599457 experiment 0.761721099426366 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166599 chr8:145166601 nonsynonymous SNV 0.157 1 23 hm5C_associated_SNPs_42322 0 0 0 0 2 chromatin 1 0.500231643921139 1 0.999536712157722 hm5C_site_41405 DeepMRMD:1;iRNA_m5C:0.999536712157722 41406 chr8 145166601 145166601 1 + G A UCEC 145166614 + 145166594 145166634 41 GGTCCCAGCAGCCCAGCCCCCACCCTCCTGGCAGCAGCGCC GGTCCCAACAGCCCAGCCCCCACCCTCCTGGCAGCAGCGCC < 41bp 1 0.185873384610329 1 0.356161296367645 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166614 chr8:145166601 nonsynonymous SNV 0.157 1 8 hm5C_associated_SNPs_42323 0 0 0 0 2 chromatin 1 0.500231643921095 1 0.999536712157809 hm5C_site_41406 DeepMRMD:1;iRNA_m5C:0.999536712157809 41407 chr9 6990452 6990452 1 + C T UCEC 6990461 + 6990441 6990481 41 CTAAGAGTTGGCGCCATCCACTTAGCAGGCCTCCAGCAAGA CTAAGAGTTGGTGCCATCCACTTAGCAGGCCTCCAGCAAGA < 41bp 1 0.217246389663854 1 0.173576354980469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KDM4C ENSG00000107077 CDS Human protein_coding chr9:6990461 chr9:6990452 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_42324 0 0 1 0 2 Nucleus 1 0.500231631229491 1 0.999536737541018 hm5C_site_41407 DeepMRMD:1;iRNA_m5C:0.999536737541018 41408 chr7 77256351 77256351 1 + G T UCEC 77256335 + 77256315 77256355 41 AGGTCCCTCTCCAAGAGGGACCAAAAAGTTTTGATGGGAAC AGGTCCCTCTCCAAGAGGGACCAAAAAGTTTTGATGTGAAC < 41bp 1 0.086448346088819 1 0.242062032222748 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256335 chr7:77256351 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_42325 0 0 1 0 0 Ribosome 1 0.500231643880225 1 0.99953671223955 hm5C_site_41408 DeepMRMD:1;iRNA_m5C:0.99953671223955 41409 chr7 77256351 77256351 1 + G T UCEC 77256336 + 77256316 77256356 41 GGTCCCTCTCCAAGAGGGACCAAAAAGTTTTGATGGGAACA GGTCCCTCTCCAAGAGGGACCAAAAAGTTTTGATGTGAACA < 41bp 1 0.213951645526242 1 0.471249550580978 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77256336 chr7:77256351 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_42326 0 0 1 0 0 Ribosome 1 0.500231644113912 1 0.999536711772175 hm5C_site_41409 DeepMRMD:1;iRNA_m5C:0.999536711772175 41410 chr2 28999809 28999809 1 + C T UCEC 28999796 + 28999776 28999816 41 TGTATCAAGTCTCGGGAGATCTTTCTCAGCCAGCCTATTCT TGTATCAAGTCTCGGGAGATCTTTCTCAGCCAGTCTATTCT < 41bp 1 0.1200287836208 1 0.0815187394618988 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1CB ENSG00000213639 CDS Human protein_coding chr2:28999796 chr2:28999809 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_42327 0 0 1 0 2 Ribosome 1 0.500231643921098 1 0.999536712157805 hm5C_site_41410 DeepMRMD:1;iRNA_m5C:0.999536712157805 41411 chr15 42105212 42105212 1 + G A UCEC 42105224 + 42105204 42105244 41 GGAAAAAAGGCGGACAGTACCTTCTGCATCACGTCCTCAGG GGAAAAAAAGCGGACAGTACCTTCTGCATCACGTCCTCAGG < 41bp 1 0.232518112605363 1 0.0941851735115051 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42105224 chr15:42105212 synonymous SNV . 0 9 hm5C_associated_SNPs_42328 0 0 0 0 1 Endoplasmic reticulum 1 0.500231645440953 1 0.999536709118093 hm5C_site_41411 DeepMRMD:1;iRNA_m5C:0.999536709118093 41412 chr18 51887079 51887079 1 + G T UCEC 51887099 + 51887079 51887119 41 GATCTGCTTCTCAAGCTCTACAGGCTTATATTGATGATTTT TATCTGCTTCTCAAGCTCTACAGGCTTATATTGATGATTTT < 41bp 1 0.464700455182021 1 0.718392729759216 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C18orf54 ENSG00000166845 CDS Human protein_coding chr18:51887099 chr18:51887079 nonsynonymous SNV 0.206 2 1 hm5C_associated_SNPs_42329 0 0 1 0 0 chromatin 1 0.500231644019101 0.563214540481568 0.999536711961798 hm5C_site_41412 DeepMRMD:0.563214540481568;iRNA_m5C:0.999536711961798 41413 chr2 74315074 74315074 1 + C T UCEC 74315067 + 74315047 74315087 41 CTCATCCTGGCCTGGGAGGGCATTCCCCGTAGCCTCGGAGA CTCATCCTGGCCTGGGAGGGCATTCCCTGTAGCCTCGGAGA < 41bp 1 0.0234542568599432 1 0.0929228663444519 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74315067 chr2:74315074 nonsynonymous SNV 0.997 3 28 hm5C_associated_SNPs_42330 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_41413 DeepMRMD:1;iRNA_m5C:0.999536712157815 41414 chr1 183072765 183072765 1 + C T UCEC 183072762 + 183072742 183072782 41 ACTTTGACAATAGCCCTGTGCTGCAGGTAAATTCTCACAGG ACTTTGACAATAGCCCTGTGCTGTAGGTAAATTCTCACAGG < 41bp 1 0.538171219489258 1 0.0764662325382233 experiment 0.923657561021484 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183072762 chr1:183072765 stopgain 0.997 1 24 hm5C_associated_SNPs_42331 0 0 1 0 1 Ribosome 1 0.500231643877031 1 0.999536712245938 hm5C_site_41414 DeepMRMD:1;iRNA_m5C:0.999536712245938 41415 chr4 7691275 7691275 1 + G A UCEC 7691293 + 7691273 7691313 41 GTGCACACCAAGGACACCGCCCCAGGCCTCATCATGGGTGC GTACACACCAAGGACACCGCCCCAGGCCTCATCATGGGTGC < 41bp 1 0.148654427417363 1 0.245269984006882 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7691293 chr4:7691275 synonymous SNV . 0 3 hm5C_associated_SNPs_42332 0 0 0 0 2 nucleus 1 0.500231643926673 1 0.999536712146653 hm5C_site_41415 DeepMRMD:1;iRNA_m5C:0.999536712146653 41416 chr14 101419730 101419730 1 + A G UCEC 101419734 + 101419714 101419754 41 TGAGTCATGGACGATGAATACTACGTGTCTGAAACTCTGAG TGAGTCATGGACGATGGATACTACGTGTCTGAAACTCTGAG < 41bp 1 0.513810985904216 1 0.0715165138244629 experiment 0.972378028191568 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419734 chr14:101419730 . . 0 17 hm5C_associated_SNPs_42333 0 0 1 0 0 unknown 1 0.50023194691637 1 0.999536106167261 hm5C_site_41416 DeepMRMD:1;iRNA_m5C:0.999536106167261 41417 chr14 101419730 101419730 1 + A G UCEC 101419742 + 101419722 101419762 41 GGACGATGAATACTACGTGTCTGAAACTCTGAGGTCCAACA GGACGATGGATACTACGTGTCTGAAACTCTGAGGTCCAACA < 41bp 1 0.589852322778185 1 0.139557898044586 experiment 0.820295354443629 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419742 chr14:101419730 . . 0 9 hm5C_associated_SNPs_42334 0 0 1 0 0 unknown 1 0.500237350206775 1 0.999525299586449 hm5C_site_41417 DeepMRMD:1;iRNA_m5C:0.999525299586449 41418 chr14 101419730 101419730 1 + A G UCEC 101419748 + 101419728 101419768 41 TGAATACTACGTGTCTGAAACTCTGAGGTCCAACAGAAAAC TGGATACTACGTGTCTGAAACTCTGAGGTCCAACAGAAAAC < 41bp 1 0.335123920701841 1 0.245059907436371 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD114-3 ENSG00000201839 ncRNA_exonic Human snoRNA chr14:101419748 chr14:101419730 . . 0 3 hm5C_associated_SNPs_42335 0 0 1 0 0 unknown 1 0.500231643570497 1 0.999536712859006 hm5C_site_41418 DeepMRMD:1;iRNA_m5C:0.999536712859006 41419 chr14 103931985 103931985 1 + C T UCEC 103931971 + 103931951 103931991 41 AGCAATGAATTTACTGTTGGCGGTAAACTCGACACGTTTTG AGCAATGAATTTACTGTTGGCGGTAAACTCGACATGTTTTG < 41bp 1 0.513018998928408 1 0.209697693586349 experiment 0.973962002143183 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARK3 ENSG00000075413 CDS Human protein_coding chr14:103931971 chr14:103931985 nonsynonymous SNV 0.966 4 35 hm5C_associated_SNPs_42337 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41419 DeepMRMD:1;iRNA_m5C:0.999536712157815 41420 chr12 51844694 51844694 1 + G A UCEC 51844686 + 51844666 51844706 41 GAACTCTGTATGTGGGAGTTCGGATGCCGCTTGGCCGGCAG GAACTCTGTATGTGGGAGTTCGGATGCCACTTGGCCGGCAG < 41bp 1 0.588292104165648 1 0.786007821559906 experiment 0.823415791668704 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A8 ENSG00000050438 CDS Human protein_coding chr12:51844686 chr12:51844694 synonymous SNV . 0 29 hm5C_associated_SNPs_42338 0 0 0 0 1 exosome 1 0.50023164383505 0.427984356880188 0.9995367123299 hm5C_site_41420 DeepMRMD:0.427984356880188;iRNA_m5C:0.9995367123299 41421 chr10 75551698 75551698 1 + G A UCEC 75551705 + 75551685 75551725 41 AACACAAGAAGACGCTGGAGCGGCTCTTCCCCGGCTTCCGG AACACAAGAAGACACTGGAGCGGCTCTTCCCCGGCTTCCGG < 41bp 1 0.357024395938567 1 0.216671526432037 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75551705 chr10:75551698 synonymous SNV . 0 14 hm5C_associated_SNPs_42339 0 0 1 0 0 Cytosol 1 0.500231643921055 1 0.99953671215789 hm5C_site_41421 DeepMRMD:1;iRNA_m5C:0.99953671215789 41422 chr22 42273319 42273319 1 + C A UCEC 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGACTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG < 41bp 1 0.27274870768426 1 0.0247563421726227 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273319 stopgain 1.000 1 8 hm5C_associated_SNPs_42340 0 0 1 0 1 Ribosome 1 0.500231643902247 1 0.999536712195505 hm5C_site_41422 DeepMRMD:1;iRNA_m5C:0.999536712195505 41423 chrX 41088594 41088594 1 + G A UCEC 41088595 + 41088575 41088615 41 GAATCACTATCAAAAAAGAGCATACCAGTGTATAAAATGTA GAATCACTATCAAAAAAGAACATACCAGTGTATAAAATGTA < 41bp 1 0.0070099614084932 1 0.0966778993606567 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41088595 chrX:41088594 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_42341 0 0 1 0 2 Nucleus 1 0.500231643915554 1 0.999536712168892 hm5C_site_41423 DeepMRMD:1;iRNA_m5C:0.999536712168892 41424 chr1 2419117 2419117 1 + G A UCEC 2419119 + 2419099 2419139 41 AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACAAATA AAGATCCTCTTCAAAGACATCATTGAAACCATCAACAAATA < 41bp 1 0.043921219559863 1 0.0467396676540375 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2419119 chr1:2419117 nonsynonymous SNV 0.979 4 19 hm5C_associated_SNPs_42342 0 0 0 0 2 nucleus 1 0.500232157658641 1 0.999535684682717 hm5C_site_41424 DeepMRMD:1;iRNA_m5C:0.999535684682717 41425 chr3 190347218 190347218 1 + C T UCEC 190347220 + 190347200 190347240 41 ACCTCTGAGGATCTCAAGCGCAGCTATGTCTGTCATGCTAG ACCTCTGAGGATCTCAAGTGCAGCTATGTCTGTCATGCTAG < 41bp 1 0.403690360161975 1 0.0937489569187164 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IL1RAP ENSG00000196083 CDS Human protein_coding chr3:190347220 chr3:190347218 nonsynonymous SNV 0.994 4 19 hm5C_associated_SNPs_42343 0 0 1 0 2 Endoplasmic reticulum 1 0.500232585948196 1 0.999534828103609 hm5C_site_41425 DeepMRMD:1;iRNA_m5C:0.999534828103609 41426 chr8 23147910 23147910 1 + G A UCEC 23147890 + 23147870 23147910 41 AGAGTCTGTTGGAGAAGAGGCTGGTGGCAGAGGAGGAAGAG AGAGTCTGTTGGAGAAGAGGCTGGTGGCAGAGGAGGAAGAA < 41bp 1 0.641896120537583 1 0.45251053571701 experiment 0.716207758924834 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23147890 chr8:23147910 synonymous SNV . 0 41 hm5C_associated_SNPs_42344 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41426 DeepMRMD:1;iRNA_m5C:0.999536712157815 41427 chr8 23147910 23147910 1 + G A UCEC 23147913 + 23147893 23147933 41 GTGGCAGAGGAGGAAGAGGACGAAGAGGAGGTGGAAGAGGA GTGGCAGAGGAGGAAGAAGACGAAGAGGAGGTGGAAGAGGA < 41bp 1 0.699949057013783 1 0.628674864768982 experiment 0.600101885972434 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23147913 chr8:23147910 synonymous SNV . 0 18 hm5C_associated_SNPs_42345 0 0 1 0 1 Cytosol 1 0.500231643921092 0.742650270462036 0.999536712157815 hm5C_site_41427 DeepMRMD:0.742650270462036;iRNA_m5C:0.999536712157815 41428 chr11 35684875 35684875 1 + C T UCEC 35684862 + 35684842 35684882 41 CCACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGG CCACGGCTCCCAGGCCTGGACCCCGCCAGCTGATGGAGAGG < 41bp 1 0.36728512905751 1 0.359701991081238 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684862 chr11:35684875 synonymous SNV . 0 34 hm5C_associated_SNPs_42346 0 0 1 0 0 Ribosome 1 0.500231643921062 1 0.999536712157877 hm5C_site_41428 DeepMRMD:1;iRNA_m5C:0.999536712157877 41429 chr11 35684875 35684875 1 + C T UCEC 35684863 + 35684843 35684883 41 CACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGGG CACGGCTCCCAGGCCTGGACCCCGCCAGCTGATGGAGAGGG < 41bp 1 0.207002750506943 1 0.182311654090881 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684863 chr11:35684875 synonymous SNV . 0 33 hm5C_associated_SNPs_42347 0 0 1 0 0 Ribosome 1 0.500231617529415 1 0.999536764941171 hm5C_site_41429 DeepMRMD:1;iRNA_m5C:0.999536764941171 41430 chr11 35684875 35684875 1 + C T UCEC 35684864 + 35684844 35684884 41 ACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGGGG ACGGCTCCCAGGCCTGGACCCCGCCAGCTGATGGAGAGGGG < 41bp 1 0.267866900399943 1 0.566761255264282 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684864 chr11:35684875 synonymous SNV . 0 32 hm5C_associated_SNPs_42348 0 0 1 0 0 Ribosome 1 0.50023163128352 0.866477489471436 0.99953673743296 hm5C_site_41430 DeepMRMD:0.866477489471436;iRNA_m5C:0.99953673743296 41431 chr16 29994950 29994950 1 + C T UCEC 29994940 + 29994920 29994960 41 TCCGCCCGCCGCCGGGCCTACTGCCGTAACCGAGACCACTT TCCGCCCGCCGCCGGGCCTACTGCCGTAACTGAGACCACTT < 41bp 1 0.537258506029519 1 0.0906435549259186 experiment 0.925482987940962 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994940 chr16:29994950 stopgain 1.000 1 31 hm5C_associated_SNPs_42350 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41431 DeepMRMD:1;iRNA_m5C:0.999536712157815 41432 chr9 131247123 131247123 1 + C T UCEC 131247109 + 131247089 131247129 41 CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGCGAGGAG CCATCCGAGCCCAGAAGGAGCGAGCCGAGAAGAGTGAGGAG < 41bp 1 0.417104763801387 1 0.447435587644577 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247109 chr9:131247123 synonymous SNV . 0 35 hm5C_associated_SNPs_42351 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41432 DeepMRMD:1;iRNA_m5C:0.999536712157815 41433 chrX 100667750 100667750 1 + T C UCEC 100667738 + 100667718 100667758 41 GGCTATAATGATGGATATGGCTTTGGGTCTGATAGATTTGG GGCTATAATGATGGATATGGCTTTGGGTCTGACAGATTTGG < 41bp 1 0.296787994151016 1 0.0440697968006134 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPH2 ENSG00000126945 CDS Human protein_coding chrX:100667738 chrX:100667750 synonymous SNV . 0 33 hm5C_associated_SNPs_42352 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_41433 DeepMRMD:1;iRNA_m5C:0.999536712157816 41434 chr1 160323974 160323974 1 + C T UCEC 160323975 + 160323955 160323995 41 TGCTGTCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCC TGCTGTCATCCTCAGGAGGTCAAATCAGTCCCAGCCTCTCC < 41bp 1 0.330312397236528 1 0.0885326862335205 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCSTN ENSG00000162736 CDS Human protein_coding chr1:160323975 chr1:160323974 nonsynonymous SNV 0.054 0 20 hm5C_associated_SNPs_42353 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643923162 1 0.999536712153675 hm5C_site_41434 DeepMRMD:1;iRNA_m5C:0.999536712153675 41435 chr17 4859429 4859429 1 + C T UCEC 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCGAATTGATCCAGGCGTGAG < 41bp 1 0.606991093167764 1 0.226066023111343 experiment 0.786017813664472 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859429 nonsynonymous SNV 0.747 2 27 hm5C_associated_SNPs_42354 0 0 1 0 2 nucleus 1 0.500231643706212 1 0.999536712587576 hm5C_site_41435 DeepMRMD:1;iRNA_m5C:0.999536712587576 41436 chr17 4859429 4859429 1 + C T UCEC 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCGAATTGATCCAGGCGTGAGT < 41bp 1 0.46031046801608 1 0.720873236656189 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859429 nonsynonymous SNV 0.747 2 26 hm5C_associated_SNPs_42355 0 0 1 0 2 nucleus 1 0.5002315634672 0.558253526687622 0.999536873065601 hm5C_site_41436 DeepMRMD:0.558253526687622;iRNA_m5C:0.999536873065601 41437 chr6 168291633 168291633 1 + G T UCEC 168291650 + 168291630 168291670 41 AAAGGAGAGAGCTGACGGGTCTGGCTATGGCTCCACCCTTC AAATGAGAGAGCTGACGGGTCTGGCTATGGCTCCACCCTTC < 41bp 1 0.644429912940727 1 0.271682739257812 experiment 0.711140174118546 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168291650 chr6:168291633 nonsynonymous SNV 0.233 0 4 hm5C_associated_SNPs_42357 0 0 1 0 1 unknown 1 0.500231643885647 1 0.999536712228706 hm5C_site_41437 DeepMRMD:1;iRNA_m5C:0.999536712228706 41438 chr3 73113194 73113194 1 + C T UCEC 73113185 + 73113165 73113205 41 ATGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTT ATGGGCCTGGGACACCCAGGCCACTTAATTGACCAAAGGTT < 41bp 1 0.126708919517788 1 0.181844472885132 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113185 chr3:73113194 stopgain 0.999 1 30 hm5C_associated_SNPs_42358 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41438 DeepMRMD:1;iRNA_m5C:0.999536712157815 41439 chr3 73113194 73113194 1 + C T UCEC 73113186 + 73113166 73113206 41 TGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGTTT TGGGCCTGGGACACCCAGGCCACTTAATTGACCAAAGGTTT < 41bp 1 0.127485359570854 1 0.0560333132743835 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113186 chr3:73113194 stopgain 0.999 1 29 hm5C_associated_SNPs_42359 0 0 1 0 1 Ribosome 1 0.500231643966345 1 0.99953671206731 hm5C_site_41439 DeepMRMD:1;iRNA_m5C:0.99953671206731 41440 chr7 150773121 150773121 1 + C A UCEC 150773103 + 150773083 150773123 41 CTGTCTCCGCCCCCCAGGTCCGGACCCTCCGTATGCACCTG CTGTCTCCGCCCCCCAGGTCCGGACCCTCCGTATGCACATG < 41bp 1 0.226338666360261 1 0.162856221199036 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773103 chr7:150773121 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_42360 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41440 DeepMRMD:1;iRNA_m5C:0.999536712157815 41441 chr4 186231893 186231893 1 + C T UCEC 186231908 + 186231888 186231928 41 GAATCCGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAG GAATCTGAATCCTGGGAGGCCCTGCCTATGACCAGCAAGAG < 41bp 1 0.0860752988770899 1 0.29104682803154 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX25 ENSG00000109762 CDS Human protein_coding chr4:186231908 chr4:186231893 stopgain 0.976 1 6 hm5C_associated_SNPs_42361 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921262 1 0.999536712157475 hm5C_site_41441 DeepMRMD:1;iRNA_m5C:0.999536712157475 41442 chr7 100454587 100454587 1 + C T UCEC 100454584 + 100454564 100454604 41 CTGGGCCTTGTGGGTGGGGTCTGCACCCTGGGAGCCGGCCT CTGGGCCTTGTGGGTGGGGTCTGTACCCTGGGAGCCGGCCT < 41bp 1 0.598622859536744 1 0.420296132564545 experiment 0.802754280926512 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC12A9 ENSG00000146828 CDS Human protein_coding chr7:100454584 chr7:100454587 synonymous SNV . 0 24 hm5C_associated_SNPs_42362 0 0 0 0 1 Cytosol 1 0.500231643920831 1 0.999536712158339 hm5C_site_41442 DeepMRMD:1;iRNA_m5C:0.999536712158339 41443 chr20 30898919 30898919 1 + G T UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAATAGAAA < 41bp 1 0.461734291981991 1 0.350228071212769 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898919 stopgain 1.000 1 36 hm5C_associated_SNPs_42364 0 0 0 0 3 Ribosome 1 0.500231665390863 1 0.999536669218275 hm5C_site_41443 DeepMRMD:1;iRNA_m5C:0.999536669218275 41444 chr9 36162413 36162413 1 + C T UCEC 36162431 + 36162411 36162451 41 GGCGTCCGCAAGTGACGGGTCCTCCTTTGTGGTGGCCAGAT GGTGTCCGCAAGTGACGGGTCCTCCTTTGTGGTGGCCAGAT < 41bp 1 0.0864404802459557 1 0.0391649901866913 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLIPR2 ENSG00000122694 CDS Human protein_coding chr9:36162431 chr9:36162413 nonsynonymous SNV 0.893 4 3 hm5C_associated_SNPs_42366 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41444 DeepMRMD:1;iRNA_m5C:0.999536712157815 41445 chrX 129149562 129149562 1 + G C UCEC 129149555 + 129149535 129149575 41 GACTGGGACCCTGGCACTGTCTGTTCAGCCTAGCGGTGGGG GACTGGGACCCTGGCACTGTCTGTTCACCCTAGCGGTGGGG < 41bp 1 0.159787010786856 1 0.146400600671768 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129149555 chrX:129149562 nonsynonymous SNV 0.991 3 28 hm5C_associated_SNPs_42368 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41445 DeepMRMD:1;iRNA_m5C:0.999536712157815 41446 chr17 7401148 7401148 1 + C T UCEC 7401133 + 7401113 7401153 41 GACCAGGTTGGCGTGCCCCGCTCCATTGCTGCCAACATGAC GACCAGGTTGGCGTGCCCCGCTCCATTGCTGCCAATATGAC < 41bp 1 0.669275777652009 1 0.923181116580963 experiment 0.661448444695981 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7401133 chr17:7401148 synonymous SNV . 0 36 hm5C_associated_SNPs_42369 0 0 1 0 1 Nucleus 1 0.500231643920612 0.153637766838074 0.999536712158776 hm5C_site_41446 DeepMRMD:0.153637766838074;iRNA_m5C:0.999536712158776 41447 chr7 157041145 157041145 1 + C T UCEC 157041160 + 157041140 157041180 41 GTGGACATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA GTGGATATTCACCACCTCGCCTCCCTAGACCCTGAGGTGTA < 41bp 1 0.36029357119837 1 0.519984483718872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157041160 chr7:157041145 synonymous SNV . 0 6 hm5C_associated_SNPs_42370 0 0 1 0 1 Ribosome 1 0.500231643921092 0.960031032562256 0.999536712157815 hm5C_site_41447 DeepMRMD:0.960031032562256;iRNA_m5C:0.999536712157815 41448 chr4 26622294 26622294 1 + A G UCEC 26622308 + 26622288 26622328 41 TGGTATACATGAGGAAAGCACAGGTTGGCTATTGTTCAATT TGGTATGCATGAGGAAAGCACAGGTTGGCTATTGTTCAATT < 41bp 1 0.457727634309379 1 0.282842457294464 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26622308 chr4:26622294 nonsynonymous SNV 0.999 4 7 hm5C_associated_SNPs_42371 0 0 1 0 2 Endoplasmic reticulum 1 0.500231751242366 1 0.999536497515269 hm5C_site_41448 DeepMRMD:1;iRNA_m5C:0.999536497515269 41449 chr12 95868070 95868070 1 + A G UCEC 95868059 + 95868039 95868079 41 CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAAGACGAAAGA CTCTACGGCTGAGGAAGCAGCCAAGAAAAAAGGACGAAAGA < 41bp 1 0.337174305225717 1 0.424514412879944 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95868059 chr12:95868070 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_42372 0 0 1 0 1 Ribosome 1 0.500231643922392 1 0.999536712155216 hm5C_site_41449 DeepMRMD:1;iRNA_m5C:0.999536712155216 41450 chr19 58904831 58904831 1 + T C UCEC 58904832 + 58904812 58904852 41 ACGACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACC ACGACAGGCTGTGGATGTGCCCCCCCTGCGCCGTGTGAACC < 41bp 1 0.229397221088465 1 0.039327472448349 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904832 chr19:58904831 nonsynonymous SNV 0.980 4 20 hm5C_associated_SNPs_42373 0 0 1 0 1 Ribosome 1 0.500231644250612 1 0.999536711498777 hm5C_site_41450 DeepMRMD:1;iRNA_m5C:0.999536711498777 41451 chr19 58904831 58904831 1 + T C UCEC 58904833 + 58904813 58904853 41 CGACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCA CGACAGGCTGTGGATGTGCCCCCCCTGCGCCGTGTGAACCA < 41bp 1 0.402124554561466 1 0.127671182155609 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904833 chr19:58904831 nonsynonymous SNV 0.980 4 19 hm5C_associated_SNPs_42374 0 0 1 0 1 Ribosome 1 0.50023164844864 1 0.99953670310272 hm5C_site_41451 DeepMRMD:1;iRNA_m5C:0.99953670310272 41452 chr19 58904831 58904831 1 + T C UCEC 58904834 + 58904814 58904854 41 GACAGGCTGTGGATGTGTCCCCCCTGCGCCGTGTGAACCAG GACAGGCTGTGGATGTGCCCCCCCTGCGCCGTGTGAACCAG < 41bp 1 0.394610867394323 1 0.183890104293823 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904834 chr19:58904831 nonsynonymous SNV 0.980 4 18 hm5C_associated_SNPs_42375 0 0 1 0 1 Ribosome 1 0.500231648995604 1 0.999536702008791 hm5C_site_41452 DeepMRMD:1;iRNA_m5C:0.999536702008791 41453 chr19 58904831 58904831 1 + T C UCEC 58904843 + 58904823 58904863 41 TGGATGTGTCCCCCCTGCGCCGTGTGAACCAGGTGAGCCTG TGGATGTGCCCCCCCTGCGCCGTGTGAACCAGGTGAGCCTG < 41bp 1 0.519373531902105 1 0.0957700312137604 experiment 0.96125293619579 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904843 chr19:58904831 nonsynonymous SNV 0.980 4 9 hm5C_associated_SNPs_42377 0 0 1 0 1 Ribosome 1 0.500231642978 1 0.999536714044 hm5C_site_41453 DeepMRMD:1;iRNA_m5C:0.999536714044 41454 chr14 24784940 24784940 1 + C T UCEC 24784923 + 24784903 24784943 41 TTCATCTCTCTGCTGGCTATCATCCTGCTGTCAGTGGCGCT TTCATCTCTCTGCTGGCTATCATCCTGCTGTCAGTGGTGCT < 41bp 1 0.0997423541695306 1 0.691152334213257 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LTB4R ENSG00000213903 CDS Human protein_coding chr14:24784923 chr14:24784940 nonsynonymous SNV 0.980 1 38 hm5C_associated_SNPs_42378 0 0 1 0 1 Nucleus 1 0.500231643737691 0.617695331573486 0.999536712524619 hm5C_site_41454 DeepMRMD:0.617695331573486;iRNA_m5C:0.999536712524619 41455 chr11 9530362 9530362 1 + G T UCEC 9530377 + 9530357 9530397 41 GAGGAGGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTGA GAGGATGAGCAGGAAGCCTTCTTTGAGCCGCCCCCAGGTGA < 41bp 1 0.397565722660471 1 0.0878462791442871 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9530377 chr11:9530362 nonsynonymous SNV 0.990 3 6 hm5C_associated_SNPs_42379 0 0 0 0 1 chromatin 1 0.50023164393679 1 0.99953671212642 hm5C_site_41455 DeepMRMD:1;iRNA_m5C:0.99953671212642 41456 chr17 80426686 80426686 1 + C A UCEC 80426677 + 80426657 80426697 41 GCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGC GCACAAAGTGCTGGTAGTGTCTGTGTGTCATCAATCTTTGC < 41bp 1 0.523163815354948 1 0.365755677223206 experiment 0.953672369290104 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80426677 chr17:80426686 nonsynonymous SNV 0.997 4 30 hm5C_associated_SNPs_42380 0 0 1 2 2 Cytosol 1 0.500233411912057 1 0.999533176175885 hm5C_site_41456 DeepMRMD:1;iRNA_m5C:0.999533176175885 41457 chr16 14970244 14970244 1 + C T UCEC 14970225 + 14970205 14970245 41 TCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATCGAGATCC TCCCCTCTTAGAAAGCTGCCCAGGGAAGCTGATCGAGATTC < 41bp 1 0.633486977869217 1 0.692391395568848 experiment 0.733026044261567 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14970225 chr16:14970244 synonymous SNV . 0 40 hm5C_associated_SNPs_42381 0 0 1 0 1 Nucleus 1 0.500231643921101 0.615217208862304 0.999536712157797 hm5C_site_41457 DeepMRMD:0.615217208862304;iRNA_m5C:0.999536712157797 41458 chr5 7885823 7885823 1 + T C UCEC 7885818 + 7885798 7885838 41 TTTGGCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTG TTTGGCTCTTCTCTAGAATACAGACCTTTCCTATCAGCCTG < 41bp 1 0.323511221091989 1 0.363283932209015 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885818 chr5:7885823 nonsynonymous SNV 0.959 0 26 hm5C_associated_SNPs_42382 0 0 1 3 1 Nucleus 1 0.500231643920543 1 0.999536712158915 hm5C_site_41458 DeepMRMD:1;iRNA_m5C:0.999536712158915 41459 chr5 7885823 7885823 1 + T C UCEC 7885822 + 7885802 7885842 41 GCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTGGAGA GCTCTTCTCTAGAATACAGACCTTTCCTATCAGCCTGGAGA < 41bp 1 0.0161034813128289 1 0.0157137215137482 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885822 chr5:7885823 nonsynonymous SNV 0.959 0 22 hm5C_associated_SNPs_42383 0 0 1 3 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41459 DeepMRMD:1;iRNA_m5C:0.999536712157815 41460 chr5 7885823 7885823 1 + T C UCEC 7885828 + 7885808 7885848 41 CTCTAGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTT CTCTAGAATACAGACCTTTCCTATCAGCCTGGAGATGCCTT < 41bp 1 0.108631622202054 1 0.0849094390869141 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885828 chr5:7885823 nonsynonymous SNV 0.959 0 16 hm5C_associated_SNPs_42384 0 0 1 3 1 Nucleus 1 0.500231643921013 1 0.999536712157974 hm5C_site_41460 DeepMRMD:1;iRNA_m5C:0.999536712157974 41461 chr5 7885823 7885823 1 + T C UCEC 7885832 + 7885812 7885852 41 AGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGC AGAATACAGACCTTTCCTATCAGCCTGGAGATGCCTTCAGC < 41bp 1 0.472273744423838 1 0.260106205940247 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885832 chr5:7885823 nonsynonymous SNV 0.959 0 12 hm5C_associated_SNPs_42385 0 0 1 3 1 Nucleus 1 0.500231643864254 1 0.999536712271491 hm5C_site_41461 DeepMRMD:1;iRNA_m5C:0.999536712271491 41462 chr5 7885823 7885823 1 + T C UCEC 7885835 + 7885815 7885855 41 ATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG ATACAGACCTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG < 41bp 1 0.239218974978599 1 0.093623161315918 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885835 chr5:7885823 nonsynonymous SNV 0.959 0 9 hm5C_associated_SNPs_42386 0 0 1 3 1 Nucleus 1 0.500231643921098 1 0.999536712157805 hm5C_site_41462 DeepMRMD:1;iRNA_m5C:0.999536712157805 41463 chr15 42984685 42984685 1 + A G UCEC 42984694 + 42984674 42984714 41 CCAGGACGAACACATTCGAACAGGGCACACAGACCCTCGGC CCAGGACGAACGCATTCGAACAGGGCACACAGACCCTCGGC < 41bp 1 0.598826532994324 1 0.932207345962524 experiment 0.802346934011351 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control STARD9 ENSG00000159433 CDS Human protein_coding chr15:42984694 chr15:42984685 nonsynonymous SNV 0.005 1 12 hm5C_associated_SNPs_42387 0 0 1 0 0 Cytosol 1 0.500231643920937 0.135585308074952 0.999536712158125 hm5C_site_41463 DeepMRMD:0.135585308074952;iRNA_m5C:0.999536712158125 41464 chr1 114440553 114440553 1 + G A UCEC 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGTGGTGCAGATTTTCCGAGACCTGGTT < 41bp 1 0.515136287418869 1 0.282276034355164 experiment 0.969727425162263 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440553 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_42389 0 0 0 0 2 chromatin 1 0.500228363225394 1 0.999543273549213 hm5C_site_41464 DeepMRMD:1;iRNA_m5C:0.999543273549213 41465 chr22 35783087 35783087 1 + G A UCEC 35783079 + 35783059 35783099 41 ACCAAGTTCAAGCAGCTCTACCGCTCCCGCATGAACTCCCT ACCAAGTTCAAGCAGCTCTACCGCTCCCACATGAACTCCCT < 41bp 1 0.158597315069459 1 0.119621396064758 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35783079 chr22:35783087 nonsynonymous SNV 0.999 4 29 hm5C_associated_SNPs_42390 0 0 1 0 1 exosome 1 0.500231651552527 1 0.999536696894946 hm5C_site_41465 DeepMRMD:1;iRNA_m5C:0.999536696894946 41466 chr7 30673468 30673468 1 + G A UCEC 30673480 + 30673460 30673500 41 AGACAATCGAGGAATGAGGACAATTTTGACAACTTTTGACC AGACAATCAAGGAATGAGGACAATTTTGACAACTTTTGACC < 41bp 1 0.145390015782179 1 0.0721597075462341 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GARS ENSG00000106105 CDS Human protein_coding chr7:30673480 chr7:30673468 nonsynonymous SNV 0.971 2 9 hm5C_associated_SNPs_42391 3 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41466 DeepMRMD:1;iRNA_m5C:0.999536712157815 Charcot-Marie-Tooth, Type 2 Charcot-Marie-Tooth, Type 2 41467 chr14 50088660 50088660 1 + C A UCEC 50088661 + 50088641 50088681 41 TTCGGCCATTATAGAGAGGCCAAATTCTCCCAGACCAAACA TTCGGCCATTATAGAGAGGACAAATTCTCCCAGACCAAACA < 41bp 1 0.239652547588387 1 0.0889347791671753 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MGAT2 ENSG00000168282 CDS Human protein_coding chr14:50088661 chr14:50088660 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_42392 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643798305 1 0.999536712403391 hm5C_site_41467 DeepMRMD:1;iRNA_m5C:0.999536712403391 41468 chr11 110333081 110333081 1 + A G UCEC 110333093 + 110333073 110333113 41 TACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATC TACAGATCGCGGTTGGGCTGCCAAATCTGTTTGACAAAATC < 41bp 1 0.237209209517454 1 0.258347004652023 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333093 chr11:110333081 synonymous SNV . 0 9 hm5C_associated_SNPs_42393 0 0 1 0 1 Cytosol 1 0.50023177127677 1 0.99953645744646 hm5C_site_41468 DeepMRMD:1;iRNA_m5C:0.99953645744646 41469 chr11 110333081 110333081 1 + A G UCEC 110333094 + 110333074 110333114 41 ACAGATCACGGTTGGGCTGCCAAATCTGTTTGACAAAATCT ACAGATCGCGGTTGGGCTGCCAAATCTGTTTGACAAAATCT < 41bp 1 0.241756529597667 1 0.595916926860809 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333094 chr11:110333081 synonymous SNV . 0 8 hm5C_associated_SNPs_42394 0 0 1 0 1 Cytosol 1 0.500231633984274 0.808166146278382 0.999536732031452 hm5C_site_41469 DeepMRMD:0.808166146278382;iRNA_m5C:0.999536732031452 41470 chr7 99751574 99751574 1 + C T UCEC 99751560 + 99751540 99751580 41 TTTGTGGTGAAGAGGCAGAACCGAGGTCGGGAGCCCATTGA TTTGTGGTGAAGAGGCAGAACCGAGGTCGGGAGCTCATTGA < 41bp 1 0.689348408849697 1 0.326058685779572 experiment 0.621303182300607 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751560 chr7:99751574 nonsynonymous SNV 0.993 4 35 hm5C_associated_SNPs_42395 0 0 1 0 1 Cytosol 1 0.500231685700625 1 0.99953662859875 hm5C_site_41470 DeepMRMD:1;iRNA_m5C:0.99953662859875 Parkinson's disease 41471 chr13 111164385 111164385 1 + C T UCEC 111164391 + 111164371 111164411 41 TGCAATGGAGGCCGCGGCACCTGCCACTACTACGCCAACAA TGCAATGGAGGCCGTGGCACCTGCCACTACTACGCCAACAA < 41bp 1 0.198963330123534 1 0.423755407333374 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111164391 chr13:111164385 synonymous SNV . 0 15 hm5C_associated_SNPs_42396 0 0 1 0 0 Cytosol 1 0.500232118521333 1 0.999535762957334 hm5C_site_41471 DeepMRMD:1;iRNA_m5C:0.999535762957334 41472 chr3 183855520 183855520 1 + C T UCEC 183855522 + 183855502 183855542 41 GATGCCAAGGCTTTGGTGCGCTCTGACTTTCTTCTGGTGTA GATGCCAAGGCTTTGGTGTGCTCTGACTTTCTTCTGGTGTA < 41bp 1 0.411045236414716 1 0.117634236812592 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183855522 chr3:183855520 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_42397 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41472 DeepMRMD:1;iRNA_m5C:0.999536712157815 41473 chr11 68363648 68363648 1 + C T UCEC 68363639 + 68363619 68363659 41 AAAGCAAGACTTGTTTGAACCCAGCAGTGCCAACACGGAGG AAAGCAAGACTTGTTTGAACCCAGCAGTGTCAACACGGAGG < 41bp 1 0.216282610614432 1 0.335182011127472 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68363639 chr11:68363648 nonsynonymous SNV 0.001 0 30 hm5C_associated_SNPs_42398 0 0 1 0 2 Nucleus 1 0.500231671716018 1 0.999536656567964 hm5C_site_41473 DeepMRMD:1;iRNA_m5C:0.999536656567964 41474 chr7 91714841 91714841 1 + G A UCEC 91714852 + 91714832 91714872 41 TGAAGGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATA TGAAGGCATACAGGTGCTTTCTCTCACTGAGTCTCCCTATA < 41bp 1 0.207229609773601 1 0.037899374961853 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714852 chr7:91714841 nonsynonymous SNV 0.997 1 10 hm5C_associated_SNPs_42399 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41474 DeepMRMD:1;iRNA_m5C:0.999536712157815 41475 chr7 91714841 91714841 1 + G A UCEC 91714856 + 91714836 91714876 41 GGCATGCAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA GGCATACAGGTGCTTTCTCTCACTGAGTCTCCCTATAGTGA < 41bp 1 0.378625265564608 1 0.119859784841537 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714856 chr7:91714841 nonsynonymous SNV 0.997 1 6 hm5C_associated_SNPs_42400 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41475 DeepMRMD:1;iRNA_m5C:0.999536712157815 41476 chr2 46607464 46607464 1 + C A UCEC 46607459 + 46607439 46607479 41 GCCCCATCTGCCCCGAGGAGCGGCTCTTGGCGGAGAACCCA GCCCCATCTGCCCCGAGGAGCGGCTATTGGCGGAGAACCCA < 41bp 1 0.461628502412598 1 0.469905465841293 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46607459 chr2:46607464 synonymous SNV . 0 26 hm5C_associated_SNPs_42401 0 0 1 0 1 Cytosol 1 0.500231643928989 1 0.999536712142022 hm5C_site_41476 DeepMRMD:1;iRNA_m5C:0.999536712142022 41477 chr5 34824169 34824169 1 + G A UCEC 34824175 + 34824155 34824195 41 GATAACCACGCTGCGGACTGCAGCAAAAGAGATGGAAGAAA GATAACCACGCTGCAGACTGCAGCAAAAGAGATGGAAGAAA < 41bp 1 0.533560698039737 1 0.337712854146957 experiment 0.932878603920526 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAI14 ENSG00000039560 CDS Human protein_coding chr5:34824175 chr5:34824169 nonsynonymous SNV 0.476 2 15 hm5C_associated_SNPs_42402 0 0 1 0 0 Cytosol 1 0.500020739387592 1 0.999958521224817 hm5C_site_41477 DeepMRMD:1;iRNA_m5C:0.999958521224817 41478 chr5 34824169 34824169 1 + G A UCEC 34824178 + 34824158 34824198 41 AACCACGCTGCGGACTGCAGCAAAAGAGATGGAAGAAAAAA AACCACGCTGCAGACTGCAGCAAAAGAGATGGAAGAAAAAA < 41bp 1 0.344344394875288 1 0.446523427963257 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RAI14 ENSG00000039560 CDS Human protein_coding chr5:34824178 chr5:34824169 nonsynonymous SNV 0.476 2 12 hm5C_associated_SNPs_42403 0 0 1 0 0 Cytosol 1 0.500234125630461 1 0.999531748739079 hm5C_site_41478 DeepMRMD:1;iRNA_m5C:0.999531748739079 41479 chr9 36162451 36162451 1 + T C UCEC 36162431 + 36162411 36162451 41 GGCGTCCGCAAGTGACGGGTCCTCCTTTGTGGTGGCCAGAT GGCGTCCGCAAGTGACGGGTCCTCCTTTGTGGTGGCCAGAC < 41bp 1 0.0858085583193034 1 0.0478655695915222 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GLIPR2 ENSG00000122694 CDS Human protein_coding chr9:36162431 chr9:36162451 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_42404 0 0 0 1 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_41479 DeepMRMD:1;iRNA_m5C:0.999536712157814 41480 chr17 15929916 15929916 1 + C A UCEC 15929902 + 15929882 15929922 41 CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCCTATATT CTACCCTGGATGCACAGGGCCGCTTTGATGAGGCATATATT < 41bp 1 0.138025550809593 1 0.0389781296253204 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15929902 chr17:15929916 synonymous SNV . 0 35 hm5C_associated_SNPs_42405 0 0 1 1 1 Ribosome 1 0.500231643921072 1 0.999536712157856 hm5C_site_41480 DeepMRMD:1;iRNA_m5C:0.999536712157856 41481 chr7 135312777 135312777 1 + G A UCEC 135312770 + 135312750 135312790 41 TCATCCCTACCCCAGTGGATCGCTACCGCCAGATTCTCCTC TCATCCCTACCCCAGTGGATCGCTACCACCAGATTCTCCTC < 41bp 1 0.463508123704327 1 0.10894900560379 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135312770 chr7:135312777 nonsynonymous SNV 0.997 3 28 hm5C_associated_SNPs_42406 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41481 DeepMRMD:1;iRNA_m5C:0.999536712157815 41482 chrX 107868971 107868971 1 + G A UCEC 107868973 + 107868953 107868993 41 GTCTCCCTGGACAGCCAGGTCTTATAGGACCTCCTGGACTT GTCTCCCTGGACAGCCAGATCTTATAGGACCTCCTGGACTT < 41bp 1 0.219673552936284 1 0.0411334633827209 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107868973 chrX:107868971 nonsynonymous SNV 0.990 2 19 hm5C_associated_SNPs_42407 0 0 0 0 2 Ribosome 1 0.500231643921171 1 0.999536712157659 hm5C_site_41482 DeepMRMD:1;iRNA_m5C:0.999536712157659 41483 chr22 41922351 41922351 1 + A G UCEC 41922331 + 41922311 41922351 41 TGGCTCAAGTTCCGTGGGCACTTGGATAACATCTCCAACAA TGGCTCAAGTTCCGTGGGCACTTGGATAACATCTCCAACAG < 41bp 1 0.564311413260971 1 0.302980244159698 experiment 0.871377173478059 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41922331 chr22:41922351 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_42408 0 0 1 0 1 chromatin 1 0.500231643798977 1 0.999536712402045 hm5C_site_41483 DeepMRMD:1;iRNA_m5C:0.999536712402045 41484 chr6 155154258 155154258 1 + G T UCEC 155154268 + 155154248 155154288 41 GGACGAGACAGAATTCAAAACACTTGGGTTCCCCCTCCTCA GGACGAGACATAATTCAAAACACTTGGGTTCCCCCTCCTCA < 41bp 1 0.175392691712041 1 0.0952976942062378 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155154268 chr6:155154258 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_42409 0 0 1 0 0 Nucleus 1 0.50023164392123 1 0.99953671215754 hm5C_site_41484 DeepMRMD:1;iRNA_m5C:0.99953671215754 41485 chr20 62904615 62904615 1 + G A UCEC 62904609 + 62904589 62904629 41 GCAGCCTCCAGGACTTGGCTCGCATCGCCATCCGGGGCACC GCAGCCTCCAGGACTTGGCTCGCATCACCATCCGGGGCACC < 41bp 1 0.369911401022184 1 0.0282723605632782 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62904609 chr20:62904615 nonsynonymous SNV 0.981 1 27 hm5C_associated_SNPs_42410 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_41485 DeepMRMD:1;iRNA_m5C:0.999536712157812 41486 chr11 11971522 11971522 1 + G A UCEC 11971540 + 11971520 11971560 41 GAGCAATGTGGTTTAGAGCTCAGTATTGACAGGTAAAGTAA GAACAATGTGGTTTAGAGCTCAGTATTGACAGGTAAAGTAA < 41bp 1 0.475441347204716 1 0.293546557426453 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP47 ENSG00000170242 CDS Human protein_coding chr11:11971540 chr11:11971522 synonymous SNV . 0 3 hm5C_associated_SNPs_42411 0 0 0 0 2 Nucleus 1 0.500231510618408 1 0.999536978763183 hm5C_site_41486 DeepMRMD:1;iRNA_m5C:0.999536978763183 41487 chr14 23070611 23070611 1 + C T UCEC 23070600 + 23070580 23070620 41 GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGCCCCACTTCC GCTGGCTGAGTAGCTGGCTGCCCACGTGGCGTCCCACTTCC < 41bp 1 0.340799935055549 1 0.157898485660553 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23070600 chr14:23070611 synonymous SNV . 0 32 hm5C_associated_SNPs_42412 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41487 DeepMRMD:1;iRNA_m5C:0.999536712157815 41488 chrX 73046732 73046732 1 + G A UCEC 73046721 - 73046701 73046741 41 TCTTAAGACCTGGGACAGGACACATGGAAGGCCTAAGAACT TCTTAAGACTTGGGACAGGACACATGGAAGGCCTAAGAACT < 41bp 1 0.225935056132295 1 0.164149910211563 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046721 chrX:73046732 . . 0 10 hm5C_associated_SNPs_42413 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_41488 DeepMRMD:1;iRNA_m5C:0.999536712157815 41489 chrX 73046732 73046732 1 + G A UCEC 73046726 - 73046706 73046746 41 AGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAA AGAAGTCTTAAGACTTGGGACAGGACACATGGAAGGCCTAA < 41bp 1 0.556106599556242 1 0.420597970485687 experiment 0.887786800887517 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046726 chrX:73046732 . . 0 15 hm5C_associated_SNPs_42414 0 0 1 0 0 unknown 1 0.500231643920998 1 0.999536712158003 hm5C_site_41489 DeepMRMD:1;iRNA_m5C:0.999536712158003 41490 chr12 58190174 58190174 1 + C T UCEC 58190183 + 58190163 58190203 41 CATGTGGTGGGCATGGCCCCCCTCTCTGTTGGCTCCCTGGA CATGTGGTGGGTATGGCCCCCCTCTCTGTTGGCTCCCTGGA < 41bp 1 0.216589861148652 1 0.170396208763123 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TSFM ENSG00000123297 CDS Human protein_coding chr12:58190183 chr12:58190174 synonymous SNV . 0 12 hm5C_associated_SNPs_42415 0 0 1 0 0 Cytosol 1 0.500231643921006 1 0.999536712157987 hm5C_site_41490 DeepMRMD:1;iRNA_m5C:0.999536712157987 41491 chr17 21319363 21319363 1 + G A UCEC 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGA < 41bp 1 0.643567992510092 1 0.440523117780685 experiment 0.712864014979816 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319363 nonsynonymous SNV 0.975 2 41 hm5C_associated_SNPs_42416 0 0 0 0 0 unknown 1 0.500231643925616 1 0.999536712148769 hm5C_site_41491 DeepMRMD:1;iRNA_m5C:0.999536712148769 41492 chr3 183369012 183369012 1 + C T UCEC 183369020 + 183369000 183369040 41 CATGAAGCAAGACGGTACCACATACTTGGGAATGAAATGAT CATGAAGCAAGATGGTACCACATACTTGGGAATGAAATGAT < 41bp 1 0.108383855628327 1 0.135109484195709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183369020 chr3:183369012 nonsynonymous SNV 0.931 4 13 hm5C_associated_SNPs_42417 0 0 1 0 1 Ribosome 1 0.500231651170013 1 0.999536697659975 hm5C_site_41492 DeepMRMD:1;iRNA_m5C:0.999536697659975 41493 chr17 34147395 34147395 1 + C A UCEC 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATAGCCAGCAAACATATAATAACCAGGGA < 41bp 1 0.158250103607022 1 0.625971496105194 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147395 nonsynonymous SNV 0.919 1 24 hm5C_associated_SNPs_42418 0 0 1 0 2 Cytosol 1 0.500231643918004 0.748057007789612 0.999536712163991 hm5C_site_41493 DeepMRMD:0.748057007789612;iRNA_m5C:0.999536712163991 41494 chr3 45559431 45559431 1 + G A UCEC 45559415 + 45559395 45559435 41 CTGATGCTCTCCCTGGGGTGCTGAGATGGCAACAACGACTG CTGATGCTCTCCCTGGGGTGCTGAGATGGCAACAACAACTG < 41bp 1 0.419679888542982 1 0.22841939330101 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45559415 chr3:45559431 nonsynonymous SNV 0.905 4 37 hm5C_associated_SNPs_42419 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643495662 1 0.999536713008676 hm5C_site_41494 DeepMRMD:1;iRNA_m5C:0.999536713008676 41495 chr11 71502826 71502826 1 + C G UCEC 71502812 + 71502792 71502832 41 AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTCAAGTAT AGCATCCTGTGTGTGTGAAGCACCCGCCGTCAGTGAAGTAT < 41bp 1 0.185646763089923 1 0.473752200603485 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71502812 chr11:71502826 synonymous SNV . 0 35 hm5C_associated_SNPs_42420 0 0 0 0 3 Ribosome 1 0.500230903919027 1 0.999538192161947 hm5C_site_41495 DeepMRMD:1;iRNA_m5C:0.999538192161947 41496 chr12 44166772 44166772 1 + G A UCEC 44166754 + 44166734 44166774 41 TTATGAATTGAAGAATGTCACAAATAACTTTGATGAACGAC TTATGAATTGAAGAATGTCACAAATAACTTTGATGAACAAC < 41bp 1 0.207581245579461 1 0.346153438091278 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166754 chr12:44166772 nonsynonymous SNV 0.802 1 39 hm5C_associated_SNPs_42421 0 0 1 0 1 Cytosol 1 0.50023159619908 1 0.99953680760184 hm5C_site_41496 DeepMRMD:1;iRNA_m5C:0.99953680760184 41497 chr7 130021554 130021554 1 + C A UCEC 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATATT < 41bp 1 0.11960982088981 1 0.074722945690155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021554 synonymous SNV . 0 39 hm5C_associated_SNPs_42422 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_41497 DeepMRMD:1;iRNA_m5C:0.999536712157815 41498 chr7 130021554 130021554 1 + C A UCEC 130021539 + 130021519 130021559 41 CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCT CGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATATTTCT < 41bp 1 0.343648955767232 1 0.323113977909088 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021539 chr7:130021554 synonymous SNV . 0 36 hm5C_associated_SNPs_42423 0 0 0 0 2 Endoplasmic reticulum 1 0.500231847012656 1 0.999536305974689 hm5C_site_41498 DeepMRMD:1;iRNA_m5C:0.999536305974689 41499 chr7 130021554 130021554 1 + C A UCEC 130021540 + 130021520 130021560 41 GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTG GAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATATTTCTG < 41bp 1 0.667560865607966 1 0.832034647464752 experiment 0.664878268784068 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021540 chr7:130021554 synonymous SNV . 0 35 hm5C_associated_SNPs_42424 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.335930705070496 0.999536712157815 hm5C_site_41499 DeepMRMD:0.335930705070496;iRNA_m5C:0.999536712157815 41500 chr7 130021554 130021554 1 + C A UCEC 130021544 + 130021524 130021564 41 GCCCTTCCCCAGCATCCAGGCGGTCAAGATCTTTCTGGAGT GCCCTTCCCCAGCATCCAGGCGGTCAAGATATTTCTGGAGT < 41bp 1 0.207072117421654 1 0.504766166210175 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021544 chr7:130021554 synonymous SNV . 0 31 hm5C_associated_SNPs_42425 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643468258 0.99046766757965 0.999536713063484 hm5C_site_41500 DeepMRMD:0.99046766757965;iRNA_m5C:0.999536713063484 41501 chr7 130021554 130021554 1 + C A UCEC 130021565 + 130021545 130021585 41 GGTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGA GGTCAAGATATTTCTGGAGTCCCACGGCATCAGCTATGAGA < 41bp 1 0.157563569267106 1 0.0766908526420593 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021565 chr7:130021554 synonymous SNV . 0 10 hm5C_associated_SNPs_42426 0 0 0 0 2 Endoplasmic reticulum 1 0.500231745762016 1 0.999536508475968 hm5C_site_41501 DeepMRMD:1;iRNA_m5C:0.999536508475968 41502 chr7 130021554 130021554 1 + C A UCEC 130021566 + 130021546 130021586 41 GTCAAGATCTTTCTGGAGTCCCACGGCATCAGCTATGAGAC GTCAAGATATTTCTGGAGTCCCACGGCATCAGCTATGAGAC < 41bp 1 0.355473788860229 1 0.467629015445709 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021566 chr7:130021554 synonymous SNV . 0 9 hm5C_associated_SNPs_42427 0 0 0 0 2 Endoplasmic reticulum 1 0.500231660858396 1 0.999536678283209 hm5C_site_41502 DeepMRMD:1;iRNA_m5C:0.999536678283209 41503 chr7 130021554 130021554 1 + C A UCEC 130021572 + 130021552 130021592 41 ATCTTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT ATATTTCTGGAGTCCCACGGCATCAGCTATGAGACCATGAT < 41bp 1 0.348465220725259 1 0.534707427024841 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021572 chr7:130021554 synonymous SNV . 0 3 hm5C_associated_SNPs_42430 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643942564 0.930585145950318 0.999536712114872 hm5C_site_41503 DeepMRMD:0.930585145950318;iRNA_m5C:0.999536712114872 41504 chr1 203821376 203821376 1 + C T UCEC 203821365 + 203821345 203821385 41 AGCATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAA AGCATGAAAACTCGCCGACTCAGCTCTGCCTTAACAGGAAA < 41bp 1 0.512343578035266 1 0.482586741447449 experiment 0.975312843929468 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203821365 chr1:203821376 nonsynonymous SNV 0.959 3 32 hm5C_associated_SNPs_42431 0 0 0 0 0 Nucleus 1 0.500231643887803 1 0.999536712224393 hm5C_site_41504 DeepMRMD:1;iRNA_m5C:0.999536712224393 41505 chr7 148963445 148963445 1 + A G UCEC 148963456 + 148963436 148963476 41 CAGACAAGCACACAGAGGACCAGAGTCCTTCGACACCCTTG CAGACAAGCGCACAGAGGACCAGAGTCCTTCGACACCCTTG < 41bp 1 0.4549142765361 1 0.50784569978714 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148963456 chr7:148963445 nonsynonymous SNV 0.019 1 10 hm5C_associated_SNPs_42432 0 0 1 0 1 chromatin 1 0.500231644414626 0.98430860042572 0.999536711170748 hm5C_site_41505 DeepMRMD:0.98430860042572;iRNA_m5C:0.999536711170748 41506 chr16 67662303 67662303 1 + C T UCEC 67662319 + 67662299 67662339 41 CACCCACACCGGGGAGAAGCCTTACGCCTGCAGCCACTGCG CACCTACACCGGGGAGAAGCCTTACGCCTGCAGCCACTGCG < 41bp 1 0.26157589917805 1 0.153874635696411 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CTCF ENSG00000102974 CDS Human protein_coding chr16:67662319 chr16:67662303 nonsynonymous SNV 0.536 4 5 hm5C_associated_SNPs_42433 0 0 1 0 0 Nucleus 1 0.500231643921094 1 0.999536712157813 hm5C_site_41506 DeepMRMD:1;iRNA_m5C:0.999536712157813 41507 chrX 205502 205502 1 + C T UCEC 205500 + 205480 205520 41 AACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAA AACAAGGCCTTGCCCTGCATCATGCGCCCTGTCGTGCTGAA < 41bp 1 0.223397858486591 1 0.0702100992202759 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205500 chrX:205502 nonsynonymous SNV 0.016 1 23 hm5C_associated_SNPs_42434 0 0 1 0 1 Cytosol 1 0.500231643919995 1 0.99953671216001 hm5C_site_41507 DeepMRMD:1;iRNA_m5C:0.99953671216001 41508 chr17 48166613 48166613 1 + G A UCEC 48166618 + 48166598 48166638 41 CCAGCTGGCAGACTCGGGACCAATACTACTGACGTCCTCCC CCAGCTGGCAGACTCAGGACCAATACTACTGACGTCCTCCC < 41bp 1 0.360449989303375 1 0.14400726556778 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48166618 chr17:48166613 nonsynonymous SNV 0.998 0 16 hm5C_associated_SNPs_42435 0 0 1 2 0 Cytosol 1 0.500231643921094 1 0.999536712157811 hm5C_site_41508 DeepMRMD:1;iRNA_m5C:0.999536712157811 41509 chr19 24010427 24010427 1 + G A UCEC 24010418 + 24010398 24010438 41 TGCGCTGTGTAACACAGATTCTCCTCTGCGCTATGTGGACA TGCGCTGTGTAACACAGATTCTCCTCTGCACTATGTGGACA < 41bp 1 0.51661643520778 1 0.0746443569660187 experiment 0.96676712958444 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010418 chr19:24010427 nonsynonymous SNV 0.979 0 30 hm5C_associated_SNPs_42436 0 0 0 0 0 Cytosol 1 0.500231643296835 1 0.99953671340633 hm5C_site_41509 DeepMRMD:1;iRNA_m5C:0.99953671340633 41510 chr19 24010427 24010427 1 + G A UCEC 24010423 + 24010403 24010443 41 TGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCC TGTGTAACACAGATTCTCCTCTGCACTATGTGGACATTGCC < 41bp 1 0.679233737510266 1 0.198252528905869 experiment 0.641532524979467 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010423 chr19:24010427 nonsynonymous SNV 0.979 0 25 hm5C_associated_SNPs_42437 0 0 0 0 0 Cytosol 1 0.500273021451312 1 0.999453957097376 hm5C_site_41510 DeepMRMD:1;iRNA_m5C:0.999453957097376 41511 chrX 41089039 41089039 1 + A C UCEC 41089020 + 41089000 41089040 41 CTTGCAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAA CTTGCAAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAACA < 41bp 1 0.0911760261454575 1 0.167693436145782 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089020 chrX:41089039 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_42438 0 0 0 0 1 Nucleus 1 0.500231658000982 1 0.999536683998037 hm5C_site_41511 DeepMRMD:1;iRNA_m5C:0.999536683998037 41512 chrX 41089039 41089039 1 + A C UCEC 41089025 + 41089005 41089045 41 AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGCCA AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAACAAGCCA < 41bp 1 0.254330399012864 1 0.758983731269836 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089025 chrX:41089039 nonsynonymous SNV 1.000 0 35 hm5C_associated_SNPs_42439 0 0 0 0 1 Nucleus 1 0.500234058481619 0.482032537460328 0.999531883036762 hm5C_site_41512 DeepMRMD:0.482032537460328;iRNA_m5C:0.999531883036762 41513 chrX 41089039 41089039 1 + A C UCEC 41089043 + 41089023 41089063 41 TCCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAG TCCAGAGGAGGTAAAACAAGCCACCAGTGTGCAGCAGATAG < 41bp 1 0.0480776534200439 1 0.232910364866257 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089043 chrX:41089039 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_42440 0 0 0 0 1 Nucleus 1 0.500231644878158 1 0.999536710243684 hm5C_site_41513 DeepMRMD:1;iRNA_m5C:0.999536710243684 41514 chrX 41089039 41089039 1 + A C UCEC 41089044 + 41089024 41089064 41 CCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGA CCAGAGGAGGTAAAACAAGCCACCAGTGTGCAGCAGATAGA < 41bp 1 0.512484648758423 1 0.213855683803558 experiment 0.975030702483155 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089044 chrX:41089039 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_42441 0 0 0 0 1 Nucleus 1 0.500231645875182 1 0.999536708249636 hm5C_site_41514 DeepMRMD:1;iRNA_m5C:0.999536708249636 41515 chrX 41089039 41089039 1 + A C UCEC 41089046 + 41089026 41089066 41 AGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAA AGAGGAGGTAAAACAAGCCACCAGTGTGCAGCAGATAGAAA < 41bp 1 0.0612811152166436 1 0.0694719851016998 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089046 chrX:41089039 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_42442 0 0 0 0 1 Nucleus 1 0.500231629553928 1 0.999536740892144 hm5C_site_41515 DeepMRMD:1;iRNA_m5C:0.999536740892144 41516 chrX 41089039 41089039 1 + A C UCEC 41089047 + 41089027 41089067 41 GAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAAT GAGGAGGTAAAACAAGCCACCAGTGTGCAGCAGATAGAAAT < 41bp 1 0.122104190684046 1 0.101808041334152 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089047 chrX:41089039 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_42443 0 0 0 0 1 Nucleus 1 0.500231643945971 1 0.999536712108058 hm5C_site_41516 DeepMRMD:1;iRNA_m5C:0.999536712108058 41517 chr7 142460379 142460379 1 + C A UCEC 142460366 + 142460346 142460386 41 CTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGG CTCCTACCCTGGAAAGATTACCAGCAACATGTTATGTGTGG < 41bp 1 0.133612290718294 1 0.12400233745575 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460366 chr7:142460379 nonsynonymous SNV 0.036 1 34 hm5C_associated_SNPs_42445 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41517 DeepMRMD:1;iRNA_m5C:0.999536712157815 41518 chr7 142460379 142460379 1 + C A UCEC 142460367 + 142460347 142460387 41 TCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGG TCCTACCCTGGAAAGATTACCAGCAACATGTTATGTGTGGG < 41bp 1 0.630166612467884 1 0.743853449821472 experiment 0.739666775064231 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460367 chr7:142460379 nonsynonymous SNV 0.036 1 33 hm5C_associated_SNPs_42446 0 0 0 0 2 Cytosol 1 0.500231642952332 0.512293100357056 0.999536714095336 hm5C_site_41518 DeepMRMD:0.512293100357056;iRNA_m5C:0.999536714095336 41519 chr7 142460379 142460379 1 + C A UCEC 142460370 + 142460350 142460390 41 TACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTT TACCCTGGAAAGATTACCAGCAACATGTTATGTGTGGGCTT < 41bp 1 0.455191643927404 1 0.730903029441833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460370 chr7:142460379 nonsynonymous SNV 0.036 1 30 hm5C_associated_SNPs_42447 0 0 0 0 2 Cytosol 1 0.500231643921093 0.538193941116334 0.999536712157815 hm5C_site_41519 DeepMRMD:0.538193941116334;iRNA_m5C:0.999536712157815 41520 chr7 142460379 142460379 1 + C A UCEC 142460373 + 142460353 142460393 41 CCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCT CCTGGAAAGATTACCAGCAACATGTTATGTGTGGGCTTCCT < 41bp 1 0.257522192336766 1 0.177739411592484 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460373 chr7:142460379 nonsynonymous SNV 0.036 1 27 hm5C_associated_SNPs_42448 0 0 0 0 2 Cytosol 1 0.500231649783784 1 0.999536700432432 hm5C_site_41520 DeepMRMD:1;iRNA_m5C:0.999536700432432 41521 chr7 142460379 142460379 1 + C A UCEC 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTATGTGTGGGCTTCCTTGAGGGAGGCAAGGA < 41bp 1 0.118327843857077 1 0.136021852493286 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460379 nonsynonymous SNV 0.036 1 12 hm5C_associated_SNPs_42449 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_41521 DeepMRMD:1;iRNA_m5C:0.999536712157815 41522 chr7 142460379 142460379 1 + C A UCEC 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTATGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC < 41bp 1 0.0319926128558875 1 0.102369487285614 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460379 nonsynonymous SNV 0.036 1 9 hm5C_associated_SNPs_42450 0 0 0 0 2 Cytosol 1 0.500231643919925 1 0.99953671216015 hm5C_site_41522 DeepMRMD:1;iRNA_m5C:0.99953671216015 41523 chr7 142460379 142460379 1 + C A UCEC 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTATGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA < 41bp 1 0.612057631783485 1 0.374273180961609 experiment 0.77588473643303 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460379 nonsynonymous SNV 0.036 1 8 hm5C_associated_SNPs_42451 0 0 0 0 2 Cytosol 1 0.500231643921073 1 0.999536712157853 hm5C_site_41523 DeepMRMD:1;iRNA_m5C:0.999536712157853 41524 chr1 65871756 65871756 1 + G A UCEC 65871740 + 65871720 65871760 41 CCCCACTCCTCTCCCCAGAACCGACCCAACTACAACGTGAG CCCCACTCCTCTCCCCAGAACCGACCCAACTACAACATGAG < 41bp 1 0.0500008460179053 1 0.142443656921387 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871740 chr1:65871756 nonsynonymous SNV 0.996 1 37 hm5C_associated_SNPs_42453 0 0 0 0 1 Cytosol 1 0.500231643921022 1 0.999536712157956 hm5C_site_41524 DeepMRMD:1;iRNA_m5C:0.999536712157956 41525 chr16 31473251 31473251 1 + C A UCEC 31473271 + 31473251 31473291 41 CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC ATTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC < 41bp 1 0.693488378588585 1 0.582305431365967 experiment 0.613023242822829 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31473271 chr16:31473251 nonsynonymous SNV 0.999 2 1 hm5C_associated_SNPs_42454 0 0 1 0 2 cytosol 1 0.500231647259094 0.835389137268066 0.999536705481813 hm5C_site_41525 DeepMRMD:0.835389137268066;iRNA_m5C:0.999536705481813 41526 chr2 160623840 160623840 1 + T G UCEC 160623826 + 160623806 160623846 41 GATTCCGAAGAAGACGGAGACCATAACAGGACATTTGATAT GATTCCGAAGAAGACGGAGACCATAACAGGACATGTGATAT < 41bp 1 0.260865721901588 1 0.12898525595665 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160623826 chr2:160623840 nonsynonymous SNV 0.998 3 35 hm5C_associated_SNPs_42455 0 0 1 0 1 Cytosol 1 0.500231645323552 1 0.999536709352897 hm5C_site_41526 DeepMRMD:1;iRNA_m5C:0.999536709352897 41527 chr8 37968308 37968308 1 + G A UCEC 37968305 + 37968285 37968325 41 GGCCAACCTGACATGGCAGTCCCGAACACAGGATGAACATC GGCCAACCTGACATGGCAGTCCCAAACACAGGATGAACATC < 41bp 1 0.371147430806923 1 0.351732909679413 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASH2L ENSG00000129691 CDS Human protein_coding chr8:37968305 chr8:37968308 nonsynonymous SNV 0.992 2 24 hm5C_associated_SNPs_42456 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41527 DeepMRMD:1;iRNA_m5C:0.999536712157815 41528 chrX 48457786 48457786 1 + C T UCEC 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTTGTTCTG < 41bp 1 0.318688365106252 1 0.0583165287971497 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457786 nonsynonymous SNV 0.996 3 35 hm5C_associated_SNPs_42458 0 0 1 0 1 Ribosome 1 0.500231644277773 1 0.999536711444455 hm5C_site_41528 DeepMRMD:1;iRNA_m5C:0.999536711444455 41529 chrX 48457786 48457786 1 + C T UCEC 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTTGTTCTGT < 41bp 1 0.296777855377245 1 0.331882536411285 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457786 nonsynonymous SNV 0.996 3 34 hm5C_associated_SNPs_42459 0 0 1 0 1 Ribosome 1 0.500231643920899 1 0.999536712158201 hm5C_site_41529 DeepMRMD:1;iRNA_m5C:0.999536712158201 41530 chr2 54845327 54845327 1 + G A UCEC 54845324 + 54845304 54845344 41 GCCTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGG GCCTCACTAAACTGTTGGACCCCAAAGGTAGGGACTCAAGG < 41bp 1 0.132791179544548 1 0.115882217884064 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845324 chr2:54845327 nonsynonymous SNV 0.903 4 24 hm5C_associated_SNPs_42461 0 0 1 0 1 Nucleus 1 0.500230722665447 1 0.999538554669107 hm5C_site_41530 DeepMRMD:1;iRNA_m5C:0.999538554669107 41531 chr2 54845327 54845327 1 + G A UCEC 54845325 + 54845305 54845345 41 CCTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGGG CCTCACTAAACTGTTGGACCCCAAAGGTAGGGACTCAAGGG < 41bp 1 0.179695905511655 1 0.18105486035347 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845325 chr2:54845327 nonsynonymous SNV 0.903 4 23 hm5C_associated_SNPs_42462 0 0 1 0 1 Nucleus 1 0.500231643926891 1 0.999536712146219 hm5C_site_41531 DeepMRMD:1;iRNA_m5C:0.999536712146219 41532 chr2 54845327 54845327 1 + G A UCEC 54845326 + 54845306 54845346 41 CTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGGGA CTCACTAAACTGTTGGACCCCAAAGGTAGGGACTCAAGGGA < 41bp 1 0.282574499809941 1 0.481099307537079 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845326 chr2:54845327 nonsynonymous SNV 0.903 4 22 hm5C_associated_SNPs_42463 0 0 1 0 1 Nucleus 1 0.500231643769043 1 0.999536712461914 hm5C_site_41532 DeepMRMD:1;iRNA_m5C:0.999536712461914 41533 chr10 74994593 74994593 1 + G A UCEC 74994586 + 74994566 74994606 41 GATCTGCAGCCCAGTGGCACCCGACTCGCTCTCCTCTCCCT GATCTGCAGCCCAGTGGCACCCGACTCACTCTCCTCTCCCT < 41bp 1 0.25449830192016 1 0.258391857147217 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FAM149B1 ENSG00000138286 CDS Human protein_coding chr10:74994586 chr10:74994593 synonymous SNV . 0 28 hm5C_associated_SNPs_42464 0 0 0 0 1 Ribosome 1 0.500110853244127 1 0.999778293511746 hm5C_site_41533 DeepMRMD:1;iRNA_m5C:0.999778293511746 41534 chr5 154251406 154251406 1 + A G UCEC 154251388 + 154251368 154251408 41 TCTGAACCTTTTCTTCCCATCCATTTATGATGTGAAATACC TCTGAACCTTTTCTTCCCATCCATTTATGATGTGAAATGCC < 41bp 1 0.0496736451996391 1 0.146324068307877 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154251388 chr5:154251406 nonsynonymous SNV 0.998 3 39 hm5C_associated_SNPs_42465 0 0 1 0 1 Ribosome 1 0.50023164392127 1 0.999536712157461 hm5C_site_41534 DeepMRMD:1;iRNA_m5C:0.999536712157461 41535 chr18 3457617 3457617 1 + T G UCEC 3457613 + 3457593 3457633 41 TAAGCCGTCATCCCCGGGATCAGTTTTGGCTCGTCCATCAG TAAGCCGTCATCCCCGGGATCAGTGTTGGCTCGTCCATCAG < 41bp 1 0.513421759692052 1 0.0564537048339844 experiment 0.973156480615896 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457613 chr18:3457617 synonymous SNV . 0 25 hm5C_associated_SNPs_42466 0 0 1 0 0 Cytosol 1 0.500231643916099 1 0.999536712167801 hm5C_site_41535 DeepMRMD:1;iRNA_m5C:0.999536712167801 41536 chr18 3457617 3457617 1 + T G UCEC 3457622 + 3457602 3457642 41 ATCCCCGGGATCAGTTTTGGCTCGTCCATCAGTGATCTGCC ATCCCCGGGATCAGTGTTGGCTCGTCCATCAGTGATCTGCC < 41bp 1 0.641844171380511 1 0.184645682573318 experiment 0.716311657238979 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457622 chr18:3457617 synonymous SNV . 0 16 hm5C_associated_SNPs_42467 0 0 1 0 0 Cytosol 1 0.500231643921117 1 0.999536712157766 hm5C_site_41536 DeepMRMD:1;iRNA_m5C:0.999536712157766 41537 chr1 36354036 36354036 1 + G A UCEC 36354031 + 36354011 36354051 41 GCCTCTTTGTCTTGTAGCTGCGGGCGCTTACCTGCCCCCCC GCCTCTTTGTCTTGTAGCTGCGGGCACTTACCTGCCCCCCC < 41bp 1 0.656246277162497 1 0.892173528671265 experiment 0.687507445675006 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO1 ENSG00000092847 CDS Human protein_coding chr1:36354031 chr1:36354036 nonsynonymous SNV 0.995 0 26 hm5C_associated_SNPs_42468 0 0 1 0 1 Cytosol 1 0.500231643921091 0.21565294265747 0.999536712157818 hm5C_site_41537 DeepMRMD:0.21565294265747;iRNA_m5C:0.999536712157818 41538 chr16 30964934 30964934 1 + G A UCEC 30964947 + 30964927 30964967 41 CAGCACCGTCCCAAGCTGAGCCAGCCTGCCCACCCCGGCAA CAGCACCATCCCAAGCTGAGCCAGCCTGCCCACCCCGGCAA < 41bp 1 0.288277989464642 1 0.088845819234848 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30964947 chr16:30964934 synonymous SNV . 0 8 hm5C_associated_SNPs_42469 0 0 1 0 0 chromatin 1 0.500231643912885 1 0.99953671217423 hm5C_site_41538 DeepMRMD:1;iRNA_m5C:0.99953671217423 41539 chr7 141255334 141255334 1 + C T UCEC 141255330 + 141255310 141255350 41 CTACAGCTGGGCTCTGCCTGCTGACCTGGGGAGGCCATTGG CTACAGCTGGGCTCTGCCTGCTGATCTGGGGAGGCCATTGG < 41bp 1 0.560998891790157 1 0.256607830524445 experiment 0.878002216419686 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141255330 chr7:141255334 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_42470 0 0 1 0 2 Cytosol 1 0.500231643921048 1 0.999536712157904 hm5C_site_41539 DeepMRMD:1;iRNA_m5C:0.999536712157904 41540 chr14 56233302 56233302 1 + T G UCEC 56233306 + 56233286 56233326 41 AAGCCTACAAGAAAGTTTGCCCTTCTGGGGCGACAGGCTCA AAGCCTACAAGAAAGTGTGCCCTTCTGGGGCGACAGGCTCA < 41bp 1 0.024625275358454 1 0.0315200090408325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233306 chr14:56233302 . . 0 17 hm5C_associated_SNPs_42471 0 0 0 0 0 unknown 1 0.500231643926437 1 0.999536712147125 hm5C_site_41540 DeepMRMD:1;iRNA_m5C:0.999536712147125 41541 chr17 3572633 3572633 1 + C A UCEC 3572638 + 3572618 3572658 41 GTCCTGCTCTCCCTGCTCCTCATTCTCAAGGCGGGAAGGAG GTCCTGCTCTCCCTGATCCTCATTCTCAAGGCGGGAAGGAG < 41bp 1 0.131438367951521 1 0.106980085372925 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EMC6 ENSG00000127774 CDS Human protein_coding chr17:3572638 chr17:3572633 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_42472 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_41541 DeepMRMD:1;iRNA_m5C:0.999536712157814 41542 chr15 42111135 42111135 1 + A G UCEC 42111122 + 42111102 42111142 41 GGGCGGCAAGCAGCAAGGACCATCCTCTCCCCAAAGGGCTT GGGCGGCAAGCAGCAAGGACCATCCTCTCCCCAGAGGGCTT < 41bp 1 0.260614228574598 1 0.159453243017197 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42111122 chr15:42111135 synonymous SNV . 0 34 hm5C_associated_SNPs_42473 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_41542 DeepMRMD:1;iRNA_m5C:0.999536712157815 41543 chr2 97215187 97215187 1 + T A UCEC 97215177 + 97215157 97215197 41 ACGCCCATCGAGAGGGTGCCCCATCTCGGCTTCAAGCAGAG ACGCCCATCGAGAGGGTGCCCCATCTCGGCATCAAGCAGAG < 41bp 1 0.135472950049388 1 0.074737548828125 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID5A ENSG00000196843 CDS Human protein_coding chr2:97215177 chr2:97215187 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_42474 0 0 0 0 0 Cytosol 1 0.500231643857846 1 0.999536712284307 hm5C_site_41543 DeepMRMD:1;iRNA_m5C:0.999536712284307 41544 chr6 126210657 126210657 1 + C T UCEC 126210642 + 126210622 126210662 41 TGATGTTGAACTGAAGGGGGCGCTAGATTTAGAAACCTGTG TGATGTTGAACTGAAGGGGGCGCTAGATTTAGAAATCTGTG < 41bp 1 0.272540450312557 1 0.233351022005081 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCOA7 ENSG00000111912 CDS Human protein_coding chr6:126210642 chr6:126210657 nonsynonymous SNV 0.994 1 36 hm5C_associated_SNPs_42475 0 0 1 0 0 Ribosome 1 0.50023163414288 1 0.999536731714241 hm5C_site_41544 DeepMRMD:1;iRNA_m5C:0.999536731714241 41545 chr17 47004393 47004393 1 + G A UCEC 47004386 + 47004366 47004406 41 CCCTCTTGATGCGCCTGGGACTGATACGTCAGAAAGTGCTG CCCTCTTGATGCGCCTGGGACTGATACATCAGAAAGTGCTG < 41bp 1 0.254216762063744 1 0.0799285769462585 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2Z ENSG00000159202 CDS Human protein_coding chr17:47004386 chr17:47004393 nonsynonymous SNV 0.995 1 28 hm5C_associated_SNPs_42477 0 0 1 0 1 Ribosome 1 0.500197372315213 1 0.999605255369574 hm5C_site_41545 DeepMRMD:1;iRNA_m5C:0.999605255369574 41546 chr9 91077524 91077524 1 + G T UCEC 91077534 + 91077514 91077554 41 GTTACCCAGTGGAAAGGAACCGTTCTGGACCAGGTGCCTGT GTTACCCAGTTGAAAGGAACCGTTCTGGACCAGGTGCCTGT < 41bp 1 0.171071336983046 1 0.119755804538727 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91077534 chr9:91077524 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_42478 0 0 1 0 0 Cytosol 1 0.50023157532397 1 0.99953684935206 hm5C_site_41546 DeepMRMD:1;iRNA_m5C:0.99953684935206 41547 chr9 91077524 91077524 1 + G T UCEC 91077544 + 91077524 91077564 41 GGAAAGGAACCGTTCTGGACCAGGTGCCTGTAAATCCTTCT TGAAAGGAACCGTTCTGGACCAGGTGCCTGTAAATCCTTCT < 41bp 1 0.497322812499702 1 0.316522538661957 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91077544 chr9:91077524 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_42479 0 0 1 0 0 Cytosol 1 0.500231643710905 1 0.999536712578191 hm5C_site_41547 DeepMRMD:1;iRNA_m5C:0.999536712578191 41548 chr2 28521313 28521313 1 + C T UCEC 28521298 + 28521278 28521318 41 TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCCGTACA TGGACAGCTTTACTCCCAGGCCCAAAAAAATTATCTGTACA < 41bp 1 0.18217685342567 1 0.146111130714417 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28521298 chr2:28521313 nonsynonymous SNV 0.903 4 36 hm5C_associated_SNPs_42480 0 0 1 1 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_41548 DeepMRMD:1;iRNA_m5C:0.999536712157815 41549 chr4 3432492 3432492 1 + C T UCEC 3432506 + 3432486 3432526 41 CTCCCTCGCGCAGGAGGGCACCGCCCAGATCTGGAAGAGGC CTCCCTTGCGCAGGAGGGCACCGCCCAGATCTGGAAGAGGC < 41bp 1 0.126479082024886 1 0.304346203804016 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3432506 chr4:3432492 synonymous SNV . 0 7 hm5C_associated_SNPs_42481 0 0 0 0 0 Nucleus 1 0.500231643903584 1 0.999536712192832 hm5C_site_41549 DeepMRMD:1;iRNA_m5C:0.999536712192832 41550 chr17 1637428 1637428 1 + C T UCEC 1637447 + 1637427 1637467 41 GCGTCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG GTGTCTTCTTCGTGGGCCAGCTTGAGGCCCCGCAGCACGTG < 41bp 1 0.539670992498132 1 0.26719468832016 experiment 0.920658015003736 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1637447 chr17:1637428 synonymous SNV . 0 2 hm5C_associated_SNPs_42482 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643918898 1 0.999536712162205 hm5C_site_41550 DeepMRMD:1;iRNA_m5C:0.999536712162205 41551 chr4 123192856 123192856 1 + C A UCEC 123192859 + 123192839 123192879 41 AGGAATATTGGAAAAGTCTTCAGAAACATTTGGACCAGCAG AGGAATATTGGAAAAGTATTCAGAAACATTTGGACCAGCAG < 41bp 1 0.323264673484092 1 0.749978542327881 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123192859 chr4:123192856 nonsynonymous SNV 0.997 3 18 hm5C_associated_SNPs_42483 0 0 1 0 1 Nucleus 1 0.500231643921093 0.500042915344238 0.999536712157814 hm5C_site_41551 DeepMRMD:0.500042915344238;iRNA_m5C:0.999536712157814 41552 chr7 150840476 150840476 1 + C A UCEC 150840477 + 150840457 150840497 41 AGTATGAACAGAAGCTCTTCCTGGCCCCACTGCCAAGCTCA AGTATGAACAGAAGCTCTTACTGGCCCCACTGCCAAGCTCA < 41bp 1 0.39056338823274 1 0.231147319078445 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150840477 chr7:150840476 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_42484 0 0 1 0 1 Cytosol 1 0.500231643944611 1 0.999536712110778 hm5C_site_41552 DeepMRMD:1;iRNA_m5C:0.999536712110778 41553 chr12 53647893 53647893 1 + G A UCEC 53647877 + 53647857 53647897 41 CTGCTGTCATGGTGATGGCTCTGCTGGCAGTGGTGGGACTC CTGCTGTCATGGTGATGGCTCTGCTGGCAGTGGTGGAACTC < 41bp 1 0.571970348904264 1 0.32958522439003 experiment 0.856059302191472 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFSD5 ENSG00000182544 CDS Human protein_coding chr12:53647877 chr12:53647893 nonsynonymous SNV 0.999 1 37 hm5C_associated_SNPs_42485 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921119 1 0.999536712157762 hm5C_site_41553 DeepMRMD:1;iRNA_m5C:0.999536712157762 41554 chr17 78087072 78087072 1 + T C UCEC 78087058 + 78087038 78087078 41 AGCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT AGCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCCCACCCT < 41bp 1 0.677554052807515 1 0.524318277835846 experiment 0.64489189438497 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78087058 chr17:78087072 nonsynonymous SNV 0.620 4 35 hm5C_associated_SNPs_42486 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 0.951363444328308 0.999536712157815 hm5C_site_41554 DeepMRMD:0.951363444328308;iRNA_m5C:0.999536712157815 41555 chr19 50385595 50385595 1 + G A UCEC 50385593 + 50385573 50385613 41 GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGC GCAGCCACAGCCTGAGGGAGCCACCTCCGACCTTCCCCCGC < 41bp 1 0.194328529915407 1 0.140281856060028 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385593 chr19:50385595 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_42487 0 0 1 0 2 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_41555 DeepMRMD:1;iRNA_m5C:0.999536712157815 41556 chr19 50385595 50385595 1 + G A UCEC 50385594 + 50385574 50385614 41 CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGCC CAGCCACAGCCTGAGGGAGCCACCTCCGACCTTCCCCCGCC < 41bp 1 0.474809161741029 1 0.239550113677979 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385594 chr19:50385595 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_42488 0 0 1 0 2 membrane 1 0.500231643931817 1 0.999536712136367 hm5C_site_41556 DeepMRMD:1;iRNA_m5C:0.999536712136367 41557 chr10 51581298 51581298 1 + G T UCEC 51581313 + 51581293 51581333 41 CTGAAGATTCAACTGTCCTGCTCTTTGAAGCTGACACAATT CTGAATATTCAACTGTCCTGCTCTTTGAAGCTGACACAATT < 41bp 1 0.157515808118018 1 0.0411920845508575 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCOA4 ENSG00000138293 CDS Human other chr10:51581313 chr10:51581298 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_42489 0 0 1 0 2 Cytosol 1 0.500231491066898 1 0.999537017866205 hm5C_site_41557 DeepMRMD:1;iRNA_m5C:0.999537017866205 41558 chr7 150933632 150933632 1 + G A UCEC 150933614 + 150933594 150933634 41 AAGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCT AAGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCACT < 41bp 1 0.358352135923695 1 0.87986147403717 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933614 chr7:150933632 nonsynonymous SNV 0.995 1 39 hm5C_associated_SNPs_42493 0 0 1 0 1 Nucleus 1 0.500231643921092 0.24027705192566 0.999536712157815 hm5C_site_41558 DeepMRMD:0.24027705192566;iRNA_m5C:0.999536712157815 41559 chr7 150933632 150933632 1 + G A UCEC 150933616 + 150933596 150933636 41 GGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCGCTCT GGTACCCTCATGTACCGGCTCCACAAACGCTTCAGCACTCT < 41bp 1 0.235053465040721 1 0.103213548660278 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150933616 chr7:150933632 nonsynonymous SNV 0.995 1 37 hm5C_associated_SNPs_42494 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41559 DeepMRMD:1;iRNA_m5C:0.999536712157815 41560 chr3 42701093 42701093 1 + C T UCEC 42701099 + 42701079 42701119 41 CCTCTGCATCGGCCCGAGGGCCGCCAGCCACTGATGGGCTG CCTCTGCATCGGCCTGAGGGCCGCCAGCCACTGATGGGCTG < 41bp 1 0.151920893986471 1 0.195265114307404 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701099 chr3:42701093 stopgain 0.009 0 15 hm5C_associated_SNPs_42495 0 0 0 0 0 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_41560 DeepMRMD:1;iRNA_m5C:0.999536712157815 41561 chr3 42701093 42701093 1 + C T UCEC 42701100 + 42701080 42701120 41 CTCTGCATCGGCCCGAGGGCCGCCAGCCACTGATGGGCTGG CTCTGCATCGGCCTGAGGGCCGCCAGCCACTGATGGGCTGG < 41bp 1 0.621867349859887 1 0.605663299560547 experiment 0.756265300280227 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701100 chr3:42701093 stopgain 0.009 0 14 hm5C_associated_SNPs_42496 0 0 0 0 0 membrane 1 0.500231939194296 0.788673400878906 0.999536121611409 hm5C_site_41561 DeepMRMD:0.788673400878906;iRNA_m5C:0.999536121611409 41562 chr3 42701093 42701093 1 + C T UCEC 42701102 + 42701082 42701122 41 CTGCATCGGCCCGAGGGCCGCCAGCCACTGATGGGCTGGGG CTGCATCGGCCTGAGGGCCGCCAGCCACTGATGGGCTGGGG < 41bp 1 0.119721514860052 1 0.735089302062988 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701102 chr3:42701093 stopgain 0.009 0 12 hm5C_associated_SNPs_42497 0 0 0 0 0 membrane 1 0.500231676166708 0.529821395874024 0.999536647666584 hm5C_site_41562 DeepMRMD:0.529821395874024;iRNA_m5C:0.999536647666584 41563 chr3 42701093 42701093 1 + C T UCEC 42701103 + 42701083 42701123 41 TGCATCGGCCCGAGGGCCGCCAGCCACTGATGGGCTGGGGG TGCATCGGCCTGAGGGCCGCCAGCCACTGATGGGCTGGGGG < 41bp 1 0.157320608735083 1 0.467978596687317 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701103 chr3:42701093 stopgain 0.009 0 11 hm5C_associated_SNPs_42498 0 0 0 0 0 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_41563 DeepMRMD:1;iRNA_m5C:0.999536712157815 41564 chr3 42701093 42701093 1 + C T UCEC 42701106 + 42701086 42701126 41 ATCGGCCCGAGGGCCGCCAGCCACTGATGGGCTGGGGGCCA ATCGGCCTGAGGGCCGCCAGCCACTGATGGGCTGGGGGCCA < 41bp 1 0.210398680007922 1 0.357427716255188 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701106 chr3:42701093 stopgain 0.009 0 8 hm5C_associated_SNPs_42499 0 0 0 0 0 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_41564 DeepMRMD:1;iRNA_m5C:0.999536712157815 41565 chr3 42701093 42701093 1 + C T UCEC 42701107 + 42701087 42701127 41 TCGGCCCGAGGGCCGCCAGCCACTGATGGGCTGGGGGCCAA TCGGCCTGAGGGCCGCCAGCCACTGATGGGCTGGGGGCCAA < 41bp 1 0.449782015077401 1 0.298061370849609 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701107 chr3:42701093 stopgain 0.009 0 7 hm5C_associated_SNPs_42500 0 0 0 0 0 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_41565 DeepMRMD:1;iRNA_m5C:0.999536712157815 41566 chrX 149671734 149671734 1 + C T UCEC 149671740 + 149671720 149671760 41 GGGCAGCTGGGATCCGAAGGCCTGGAGGCAGGTGCCCGCTC GGGCAGCTGGGATCTGAAGGCCTGGAGGCAGGTGCCCGCTC < 41bp 1 0.489145356227635 1 0.747419655323029 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149671740 chrX:149671734 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_42501 0 0 0 0 1 Nucleus 1 0.500231643921092 0.505160689353942 0.999536712157815 hm5C_site_41566 DeepMRMD:0.505160689353942;iRNA_m5C:0.999536712157815 41567 chrX 149671734 149671734 1 + C T UCEC 149671748 + 149671728 149671768 41 GGGATCCGAAGGCCTGGAGGCAGGTGCCCGCTCCACTACTG GGGATCTGAAGGCCTGGAGGCAGGTGCCCGCTCCACTACTG < 41bp 1 0.694708763802954 1 0.806815624237061 experiment 0.610582472394092 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149671748 chrX:149671734 nonsynonymous SNV 1.000 3 7 hm5C_associated_SNPs_42502 0 0 0 0 1 Nucleus 1 0.500231647232579 0.386368751525878 0.999536705534841 hm5C_site_41567 DeepMRMD:0.386368751525878;iRNA_m5C:0.999536705534841 41568 chr17 27074254 27074254 1 + A G UCEC 27074259 + 27074239 27074279 41 TCTTCAAGTGCCCTGAGGACCAGCTTCCTCTGGACTATGCC TCTTCAAGTGCCCTGGGGACCAGCTTCCTCTGGACTATGCC < 41bp 1 0.431313943885087 1 0.336327075958252 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27074259 chr17:27074254 stoploss 1.000 3 16 hm5C_associated_SNPs_42503 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41568 DeepMRMD:1;iRNA_m5C:0.999536712157815 41569 chr17 74944110 74944110 1 + G A UCEC 74944107 + 74944087 74944127 41 GCACCGACACCTGCCTGGACCACGGGCTAATCTGTGAGCCC GCACCGACACCTGCCTGGACCACAGGCTAATCTGTGAGCCC < 41bp 1 0.526252878024742 1 0.344940423965454 experiment 0.947494243950515 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74944107 chr17:74944110 nonsynonymous SNV 0.432 4 24 hm5C_associated_SNPs_42504 0 0 1 0 1 exosome 1 0.500230191636165 1 0.99953961672767 hm5C_site_41569 DeepMRMD:1;iRNA_m5C:0.99953961672767 41570 chr6 36884236 36884236 1 + C G UCEC 36884229 + 36884209 36884249 41 ATACTTCTACAGGAGGAGACCTCTGAACAGATCACAAATGT ATACTTCTACAGGAGGAGACCTCTGAAGAGATCACAAATGT < 41bp 1 0.202705391519141 1 0.321150064468384 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C6orf89 ENSG00000198663 CDS Human protein_coding chr6:36884229 chr6:36884236 nonsynonymous SNV 0.995 4 28 hm5C_associated_SNPs_42505 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643259428 1 0.999536713481144 hm5C_site_41570 DeepMRMD:1;iRNA_m5C:0.999536713481144 41571 chr5 21491512 21491512 1 + C T UCEC 21491518 + 21491498 21491538 41 TCAGAAAACAAAGTCGTGGACAACCAGGCTGGGACCCAGGG TCAGAAAACAAAGTTGTGGACAACCAGGCTGGGACCCAGGG < 41bp 1 0.135963793496021 1 0.090019553899765 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21491518 chr5:21491512 . . 0 15 hm5C_associated_SNPs_42506 0 0 1 0 1 unknown 1 0.500231643912488 1 0.999536712175024 hm5C_site_41571 DeepMRMD:1;iRNA_m5C:0.999536712175024 41572 chr14 73577700 73577700 1 + G A UCEC 73577703 + 73577683 73577723 41 CTGAAACCTACTCTGAGGCCCATCAGCTCTGCTCCATCTGT CTGAAACCTACTCTGAGACCCATCAGCTCTGCTCCATCTGT < 41bp 1 0.441201359539228 1 0.260441929101944 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73577703 chr14:73577700 synonymous SNV . 0 18 hm5C_associated_SNPs_42507 0 0 1 0 0 Nucleus 1 0.500231643395493 1 0.999536713209014 hm5C_site_41572 DeepMRMD:1;iRNA_m5C:0.999536713209014 41573 chr6 33243789 33243789 1 + C T UCEC 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCCAGTACAAGATTCCA < 41bp 1 0.207448088727419 1 0.0644068121910095 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243789 synonymous SNV . 0 38 hm5C_associated_SNPs_42508 0 0 1 0 2 Cytosol 1 0.50023164368186 1 0.99953671263628 hm5C_site_41573 DeepMRMD:1;iRNA_m5C:0.99953671263628 41574 chrX 129159318 129159318 1 + G T UCEC 129159311 + 129159291 129159331 41 AAATATCAGACTGGGGAGTACCTGACAGAGCAAGAAGACGA AAATATCAGACTGGGGAGTACCTGACATAGCAAGAAGACGA < 41bp 1 0.117680311488331 1 0.16925585269928 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129159311 chrX:129159318 stopgain 0.774 0 28 hm5C_associated_SNPs_42509 0 0 1 0 1 Cytosol 1 0.500231643921835 1 0.99953671215633 hm5C_site_41574 DeepMRMD:1;iRNA_m5C:0.99953671215633 41575 chr9 37486787 37486787 1 + G T UCEC 37486792 + 37486772 37486812 41 CCAACCCCAGGAAGAGGAATCAACGGATCCTGGTAAGTGAA CCAACCCCAGGAAGATGAATCAACGGATCCTGGTAAGTGAA < 41bp 1 0.545315632293601 1 0.538872957229614 experiment 0.909368735412798 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37486792 chr9:37486787 nonsynonymous SNV 0.994 3 16 hm5C_associated_SNPs_42510 0 0 1 0 2 Ribosome 1 0.500231643578128 0.922254085540772 0.999536712843745 hm5C_site_41575 DeepMRMD:0.922254085540772;iRNA_m5C:0.999536712843745 41576 chr19 16212139 16212139 1 + G A UCEC 16212142 + 16212122 16212162 41 TGGATCAGACACTAAACGAACTTAACTGTATATAAGCAAAA TGGATCAGACACTAAACAAACTTAACTGTATATAAGCAAAA < 41bp 1 0.224135140409069 1 0.0836977064609528 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPM4 ENSG00000167460 CDS Human protein_coding chr19:16212142 chr19:16212139 nonsynonymous SNV 0.957 2 18 hm5C_associated_SNPs_42511 0 0 0 0 1 Ribosome 1 0.500231641459745 1 0.99953671708051 hm5C_site_41576 DeepMRMD:1;iRNA_m5C:0.99953671708051 41577 chr9 131011004 131011004 1 + A G UCEC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGGGACCTCATGCCCAGGACCATCATG < 41bp 1 0.36047383435455 1 0.0553626120090485 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131011004 nonsynonymous SNV 0.997 4 31 hm5C_associated_SNPs_42512 0 0 1 2 1 Endoplasmic reticulum 1 0.500231643988868 1 0.999536712022263 hm5C_site_41577 DeepMRMD:1;iRNA_m5C:0.999536712022263 41578 chr4 6862966 6862966 1 + G A UCEC 6862975 + 6862955 6862995 41 GATTCGCCCTCGCTCGTGGTCTTCTGGCTCCAGTGAAGCAG GATTCGCCCTCACTCGTGGTCTTCTGGCTCCAGTGAAGCAG < 41bp 1 0.276859502079025 1 0.0555087029933929 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0232 ENSG00000170871 CDS Human protein_coding chr4:6862975 chr4:6862966 nonsynonymous SNV 0.996 4 12 hm5C_associated_SNPs_42513 0 0 1 0 0 Nucleus 1 0.500231643894512 1 0.999536712210977 hm5C_site_41578 DeepMRMD:1;iRNA_m5C:0.999536712210977 41579 chr9 18504876 18504876 1 + C T UCEC 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGTCTGGGG < 41bp 1 0.324897081831322 1 0.41802591085434 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504876 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_42514 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41579 DeepMRMD:1;iRNA_m5C:0.999536712157815 41580 chrX 48457290 48457290 1 + G A UCEC 48457272 + 48457252 48457292 41 CCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTG CCAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCATG < 41bp 1 0.633453426121606 1 0.850570797920227 experiment 0.733093147756789 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457272 chrX:48457290 nonsynonymous SNV 0.998 4 39 hm5C_associated_SNPs_42515 0 0 1 0 1 Ribosome 1 0.500231643921092 0.298858404159546 0.999536712157815 hm5C_site_41580 DeepMRMD:0.298858404159546;iRNA_m5C:0.999536712157815 41581 chrX 48457290 48457290 1 + G A UCEC 48457273 + 48457253 48457293 41 CAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTGC CAGCGCTACGGGCCCCTCTCCGAGCCAGGCAGTGCTCATGC < 41bp 1 0.63402328580179 1 0.640731513500214 experiment 0.73195342839642 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457273 chrX:48457290 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_42516 0 0 1 0 1 Ribosome 1 0.500231643921093 0.718536972999572 0.999536712157815 hm5C_site_41581 DeepMRMD:0.718536972999572;iRNA_m5C:0.999536712157815 41582 chr2 24964689 24964689 1 + C T UCEC 24964700 + 24964680 24964720 41 CAACGTCAGCGGGAACTGTACAGTCAACAGCACCGACAGAG CAACGTCAGTGGGAACTGTACAGTCAACAGCACCGACAGAG < 41bp 1 0.292288531621516 1 0.140121936798096 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24964700 chr2:24964689 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_42517 0 0 1 0 0 Cytosol 1 0.500231643510005 1 0.99953671297999 hm5C_site_41582 DeepMRMD:1;iRNA_m5C:0.99953671297999 41583 chr11 33358655 33358655 1 + G A UCEC 33358660 + 33358640 33358680 41 CTCAAGGTTTGCCAGGAGAACAGTTGTTAAATGTGGGTACT CTCAAGGTTTGCCAGAAGAACAGTTGTTAAATGTGGGTACT < 41bp 1 0.199076537553222 1 0.115263879299164 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358660 chr11:33358655 nonsynonymous SNV 1.000 2 16 hm5C_associated_SNPs_42518 0 0 0 3 2 Cytosol 1 0.50023164393019 1 0.99953671213962 hm5C_site_41583 DeepMRMD:1;iRNA_m5C:0.99953671213962 41584 chr1 12027096 12027096 1 + A C UCEC 12027087 + 12027067 12027107 41 CCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGG CCCCATCTTCACGGAGGTGGCCTGTGATGCGCTGGTGGAGG < 41bp 1 0.209854006582732 1 0.118773102760315 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027087 chr1:12027096 nonsynonymous SNV 0.989 4 30 hm5C_associated_SNPs_42519 0 0 1 0 2 Nucleus 1 0.500231643943546 1 0.999536712112909 hm5C_site_41584 DeepMRMD:1;iRNA_m5C:0.999536712112909 41585 chr16 845189 845189 1 + T C UCEC 845172 + 845152 845192 41 GCGTCTGCGGCTGCGAGACTCCAGCCTGGGTGCTGTGTGTG GCGTCTGCGGCTGCGAGACTCCAGCCTGGGTGCTGTGCGTG < 41bp 1 0.332293525279355 1 0.386926561594009 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845172 chr16:845189 nonsynonymous SNV 0.124 4 38 hm5C_associated_SNPs_42520 0 0 1 0 1 Nucleus 1 0.500231646425954 1 0.999536707148093 hm5C_site_41585 DeepMRMD:1;iRNA_m5C:0.999536707148093 41586 chr14 23794471 23794471 1 + G A UCEC 23794459 + 23794439 23794479 41 CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATG CTCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCAACATCATG < 41bp 1 0.275005368109227 1 0.216796487569809 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794459 chr14:23794471 synonymous SNV . 0 33 hm5C_associated_SNPs_42521 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_41586 DeepMRMD:1;iRNA_m5C:0.999536712157815 41587 chr14 23794471 23794471 1 + G A UCEC 23794460 + 23794440 23794480 41 TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCGACATCATGG TCCTTCTTTCTTCCAGGGGCCGGGCTAGAGCAACATCATGG < 41bp 1 0.426437284792031 1 0.421277284622192 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23794460 chr14:23794471 synonymous SNV . 0 32 hm5C_associated_SNPs_42522 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157816 hm5C_site_41587 DeepMRMD:1;iRNA_m5C:0.999536712157816 41588 chr8 11679280 11679280 1 + C A UCEC 11679261 + 11679241 11679281 41 TTACGGTTTCCATTTCAGATCTCCCTTGAGTTTAGAAATCT TTACGGTTTCCATTTCAGATCTCCCTTGAGTTTAGAAATAT < 41bp 1 0.238330409270666 1 0.037088930606842 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11679261 chr8:11679280 nonsynonymous SNV 0.997 4 40 hm5C_associated_SNPs_42523 0 0 1 0 1 Cytosol 1 0.500231643921089 1 0.999536712157823 hm5C_site_41588 DeepMRMD:1;iRNA_m5C:0.999536712157823 41589 chrX 73040937 73040937 1 + G T UCEC 73040931 - 73040911 73040951 41 AGTAACACCCCTTTCTTCAGCTGGGGATGGGGAATGGATTA AGTAACACCCCTTTATTCAGCTGGGGATGGGGAATGGATTA < 41bp 1 0.62218822293119 1 0.736357390880585 experiment 0.75562355413762 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040931 chrX:73040937 . . 0 15 hm5C_associated_SNPs_42525 0 0 1 1 0 unknown 1 0.500231643580232 0.52728521823883 0.999536712839537 hm5C_site_41589 DeepMRMD:0.52728521823883;iRNA_m5C:0.999536712839537 41590 chrX 73040937 73040937 1 + G T UCEC 73040934 - 73040914 73040954 41 CTCAGTAACACCCCTTTCTTCAGCTGGGGATGGGGAATGGA CTCAGTAACACCCCTTTATTCAGCTGGGGATGGGGAATGGA < 41bp 1 0.33620326234882 1 0.233541995286942 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040934 chrX:73040937 . . 0 18 hm5C_associated_SNPs_42526 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_41590 DeepMRMD:1;iRNA_m5C:0.999536712157815 41591 chr19 4954446 4954446 1 + G T UCEC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGTGGGGCTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.267717529051912 1 0.535599231719971 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954446 . 0.000 1 11 hm5C_associated_SNPs_42527 0 0 0 0 2 chromatin 1 0.500231645252056 0.928801536560058 0.999536709495887 hm5C_site_41591 DeepMRMD:0.928801536560058;iRNA_m5C:0.999536709495887 41592 chr19 4954446 4954446 1 + G T UCEC 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGTGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.539188160873981 1 0.48627096414566 experiment 0.921623678252038 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954446 . 0.000 1 7 hm5C_associated_SNPs_42528 0 0 0 0 2 chromatin 1 0.500231644153642 1 0.999536711692716 hm5C_site_41592 DeepMRMD:1;iRNA_m5C:0.999536711692716 41593 chrX 73044129 73044129 1 + T G UCEC 73044128 - 73044108 73044148 41 AAGTAGGAAAATTTGAATAACAATGATTATCTTTTGAATAC AAGTAGGAAAATTTGAATACCAATGATTATCTTTTGAATAC < 41bp 1 0.0929466263462026 1 0.0641671419143677 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044128 chrX:73044129 . . 0 20 hm5C_associated_SNPs_42529 0 0 1 0 0 unknown 1 0.500231818771888 1 0.999536362456223 hm5C_site_41593 DeepMRMD:1;iRNA_m5C:0.999536362456223 41594 chr2 24888632 24888632 1 + G A UCEC 24888633 + 24888613 24888653 41 AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA AACAGCACGGAAAAGAGGCACAGGGAGCAAGAAAATAAATA < 41bp 1 0.333660214063979 1 0.540680348873138 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24888633 chr2:24888632 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_42530 0 0 1 0 1 Cytosol 1 0.500231643921092 0.918639302253724 0.999536712157815 hm5C_site_41594 DeepMRMD:0.918639302253724;iRNA_m5C:0.999536712157815 41595 chr16 56659785 56659785 1 + G A UCEC 56659789 + 56659769 56659809 41 CCCCAACTGCTCTTGCGCCACTGGTAAGGGAAGCTCTGCGC CCCCAACTGCTCTTGCACCACTGGTAAGGGAAGCTCTGCGC < 41bp 1 0.698556618685714 1 0.448570430278778 experiment 0.602886762628573 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MT1E ENSG00000169715 CDS Human protein_coding chr16:56659789 chr16:56659785 nonsynonymous SNV 0.951 0 17 hm5C_associated_SNPs_42531 0 0 1 0 1 Ribosome 1 0.500229405599814 1 0.999541188800373 hm5C_site_41595 DeepMRMD:1;iRNA_m5C:0.999541188800373 41596 chr1 65684532 65684532 1 + G T UCEC 65684546 + 65684526 65684566 41 CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG CTTAAATATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG < 41bp 1 0.0786748413588775 1 0.121007204055786 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AK4 ENSG00000162433 CDS Human protein_coding chr1:65684546 chr1:65684532 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_42532 0 0 0 0 2 chromatin 1 0.500231643920866 1 0.999536712158268 hm5C_site_41596 DeepMRMD:1;iRNA_m5C:0.999536712158268 41597 chr4 110581369 110581369 1 + G T UCEC 110581382 + 110581362 110581402 41 ATTTATAGACATGGCCTTCCCTTGGTAACACTTACCTTGCC ATTTATATACATGGCCTTCCCTTGGTAACACTTACCTTGCC < 41bp 1 0.616880716738651 1 0.361482322216034 experiment 0.766238566522699 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCUB ENSG00000005059 CDS Human protein_coding chr4:110581382 chr4:110581369 nonsynonymous SNV 0.991 2 8 hm5C_associated_SNPs_42533 0 0 1 0 1 unknown 1 0.500231643921104 1 0.999536712157793 hm5C_site_41597 DeepMRMD:1;iRNA_m5C:0.999536712157793 41598 chr19 36572463 36572463 1 + C A UCEC 36572466 + 36572446 36572486 41 CACTGGCAGAAAAACATCTTCAGCAATGTGAGTGGCTTCCT CACTGGCAGAAAAACATATTCAGCAATGTGAGTGGCTTCCT < 41bp 1 0.639301434155118 1 0.673614382743835 experiment 0.721397131689765 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR62 ENSG00000075702 CDS Human protein_coding chr19:36572466 chr19:36572463 synonymous SNV . 0 18 hm5C_associated_SNPs_42534 0 0 1 0 1 Nucleus 1 0.500231642397 0.65277123451233 0.999536715206 hm5C_site_41598 DeepMRMD:0.65277123451233;iRNA_m5C:0.999536715206 41599 chr5 138994181 138994181 1 + G A UCEC 138994200 + 138994180 138994220 41 GGCAAGCTACAATAATGGGGCCAGTAAGTATTCAGATTAAT GACAAGCTACAATAATGGGGCCAGTAAGTATTCAGATTAAT < 41bp 1 0.0496387442643511 1 0.0743628442287445 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2D2 ENSG00000131508 CDS Human protein_coding chr5:138994200 chr5:138994181 stopgain 1.000 1 2 hm5C_associated_SNPs_42535 0 0 1 0 1 Ribosome 1 0.500231643877402 1 0.999536712245195 hm5C_site_41599 DeepMRMD:1;iRNA_m5C:0.999536712245195 41600 chr12 57600407 57600407 1 + C A UCEC 57600397 + 57600377 57600417 41 TATGGATGTCCATGTCAAGGCTGGCCGTGTCTATTGGACCA TATGGATGTCCATGTCAAGGCTGGCCGTGTATATTGGACCA < 41bp 1 0.181166027958515 1 0.0615924596786499 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600397 chr12:57600407 synonymous SNV . 0 31 hm5C_associated_SNPs_42536 0 0 0 0 0 Exosome 1 0.500231645102933 1 0.999536709794134 hm5C_site_41600 DeepMRMD:1;iRNA_m5C:0.999536709794134 41601 chrX 123224572 123224572 1 + A G UCEC 123224558 + 123224538 123224578 41 AGATTACGGCCTGAGGATAGCTTCATGAGTGTTTATCCAAT AGATTACGGCCTGAGGATAGCTTCATGAGTGTTTGTCCAAT < 41bp 1 0.513668491893146 1 0.122413009405136 experiment 0.972663016213709 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123224558 chrX:123224572 nonsynonymous SNV 0.996 2 35 hm5C_associated_SNPs_42537 0 0 1 0 1 Nucleus 1 0.500231662444961 1 0.999536675110078 hm5C_site_41601 DeepMRMD:1;iRNA_m5C:0.999536675110078 41602 chr11 107968463 107968463 1 + A G UCEC 107968473 + 107968453 107968493 41 TTCTCAGTGAACCAGGAGTTCAGTTTAATGTAAGCTCGTTA TTCTCAGTGAGCCAGGAGTTCAGTTTAATGTAAGCTCGTTA < 41bp 1 0.278065031999705 1 0.200038969516754 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107968473 chr11:107968463 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_42538 0 0 1 0 1 Ribosome 1 0.500231643942016 1 0.999536712115968 hm5C_site_41602 DeepMRMD:1;iRNA_m5C:0.999536712115968 41603 chr12 12940260 12940260 1 + T G UCEC 12940241 + 12940221 12940261 41 CAGGACCAGATGCGAGAGATCCTGAGCTGCCTCGAGTTTTT CAGGACCAGATGCGAGAGATCCTGAGCTGCCTCGAGTTTGT < 41bp 1 0.493632623505502 1 0.142049014568329 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APOLD1 ENSG00000178878 CDS Human protein_coding chr12:12940241 chr12:12940260 nonsynonymous SNV 0.988 0 40 hm5C_associated_SNPs_42539 0 0 1 0 0 Cytosol 1 0.500231643921239 1 0.999536712157522 hm5C_site_41603 DeepMRMD:1;iRNA_m5C:0.999536712157522 41604 chr10 102672917 102672917 1 + C A UCEC 102672904 + 102672884 102672924 41 TGCCCGCTAGGCCAGGTTTCCCCTCATCCCCAGCCCCGGGG TGCCCGCTAGGCCAGGTTTCCCCTCATCCCCAGACCCGGGG < 41bp 1 0.266862908384134 1 0.0878105163574219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102672904 chr10:102672917 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_42540 0 0 1 0 1 Nucleus 1 0.50023410229162 1 0.999531795416761 hm5C_site_41604 DeepMRMD:1;iRNA_m5C:0.999531795416761 41605 chr2 204082005 204082005 1 + T G UCEC 204082013 + 204081993 204082033 41 TTCTCGAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA TTCTCGAAAATTGTGGGGATCGAGCAAGCGGCTCAGCCAGA < 41bp 1 0.264571303055722 1 0.371687531471252 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204082013 chr2:204082005 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_42541 0 0 1 0 1 chromatin 1 0.500231646329662 1 0.999536707340676 hm5C_site_41605 DeepMRMD:1;iRNA_m5C:0.999536707340676 41606 chr7 128486883 128486883 1 + C A UCEC 128486898 + 128486878 128486918 41 GGTAGCTGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA GGTAGATGCACCGTGGAGTACATCCCCTTCACTCCTGGAGA < 41bp 1 0.0485578064757967 1 0.0515612959861755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128486898 chr7:128486883 nonsynonymous SNV 0.992 5 6 hm5C_associated_SNPs_42542 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41606 DeepMRMD:1;iRNA_m5C:0.999536712157815 41607 chr12 57588462 57588462 1 + G A UCEC 57588474 + 57588454 57588494 41 TGAACATGGCGAGGACGAGACCCACTGCAGTGAGTGACCAC TGAACATGACGAGGACGAGACCCACTGCAGTGAGTGACCAC < 41bp 1 0.0288748672830388 1 0.0284607112407684 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57588474 chr12:57588462 nonsynonymous SNV 0.952 4 9 hm5C_associated_SNPs_42543 0 0 1 0 1 Exosome 1 0.500231572405385 1 0.99953685518923 hm5C_site_41607 DeepMRMD:1;iRNA_m5C:0.99953685518923 41608 chr16 2814603 2814603 1 + G A UCEC 2814601 + 2814581 2814621 41 TTAAAGAAGATTTGAATGGACCGTTTCTTAATCAGCTGGAA TTAAAGAAGATTTGAATGGACCATTTCTTAATCAGCTGGAA < 41bp 1 0.0184768912229442 1 0.0382657051086426 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2814601 chr16:2814603 synonymous SNV . 0 23 hm5C_associated_SNPs_42544 0 0 1 0 0 Nucleus 1 0.500231643920582 1 0.999536712158837 hm5C_site_41608 DeepMRMD:1;iRNA_m5C:0.999536712158837 41609 chr16 2814603 2814603 1 + G A UCEC 2814613 + 2814593 2814633 41 TGAATGGACCGTTTCTTAATCAGCTGGAAACAGATCCATCT TGAATGGACCATTTCTTAATCAGCTGGAAACAGATCCATCT < 41bp 1 0.273285323012059 1 0.842301368713379 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2814613 chr16:2814603 synonymous SNV . 0 11 hm5C_associated_SNPs_42545 0 0 1 0 0 Nucleus 1 0.500231643921108 0.315397262573242 0.999536712157785 hm5C_site_41609 DeepMRMD:0.315397262573242;iRNA_m5C:0.999536712157785 41610 chr11 74717354 74717354 1 + T C UCEC 74717350 + 74717330 74717370 41 CTGGATCTTGCACTGTGGGCCCTGTGGCTACTCTGATCTGG CTGGATCTTGCACTGTGGGCCCTGCGGCTACTCTGATCTGG < 41bp 1 0.094254434909665 1 0.171345561742783 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEU3 ENSG00000162139 CDS Human protein_coding chr11:74717350 chr11:74717354 synonymous SNV . 0 25 hm5C_associated_SNPs_42546 0 0 1 0 0 Nucleus 1 0.500231639680457 1 0.999536720639085 hm5C_site_41610 DeepMRMD:1;iRNA_m5C:0.999536720639085 41611 chr1 54666004 54666004 1 + G A UCEC 54665990 + 54665970 54666010 41 CGGCCTTGGGGGCTTCGGGGCCCCGAGACGCGGGGCGTATG CGGCCTTGGGGGCTTCGGGGCCCCGAGACGCGGGACGTATG < 41bp 1 0.422867146688521 1 0.289273291826248 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54665990 chr1:54666004 nonsynonymous SNV 0.999 2 35 hm5C_associated_SNPs_42547 0 0 1 0 0 Ribosome 1 0.500231643921111 1 0.999536712157777 hm5C_site_41611 DeepMRMD:1;iRNA_m5C:0.999536712157777 41612 chr1 54666004 54666004 1 + G A UCEC 54665992 + 54665972 54666012 41 GCCTTGGGGGCTTCGGGGCCCCGAGACGCGGGGCGTATGAG GCCTTGGGGGCTTCGGGGCCCCGAGACGCGGGACGTATGAG < 41bp 1 0.539818336843114 1 0.63768082857132 experiment 0.920363326313773 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54665992 chr1:54666004 nonsynonymous SNV 0.999 2 33 hm5C_associated_SNPs_42548 0 0 1 0 0 Ribosome 1 0.500231643921093 0.72463834285736 0.999536712157814 hm5C_site_41612 DeepMRMD:0.72463834285736;iRNA_m5C:0.999536712157814 41613 chr12 53663546 53663546 1 + G A UCEC 53663559 + 53663539 53663579 41 CATCAGCGCAGTGGAGAAGGCTCACAGTTACCTAAGGAACA CATCAGCACAGTGGAGAAGGCTCACAGTTACCTAAGGAACA < 41bp 1 0.242984930829415 1 0.0364626944065094 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663559 chr12:53663546 nonsynonymous SNV 0.003 0 8 hm5C_associated_SNPs_42549 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41613 DeepMRMD:1;iRNA_m5C:0.999536712157815 41614 chr19 18971131 18971131 1 + G A UCEC 18971127 + 18971107 18971147 41 TACTTCTTTCCCTCCCCTCACAGCGGATCGTGTGAAGAAGG TACTTCTTTCCCTCCCCTCACAGCAGATCGTGTGAAGAAGG < 41bp 1 0.199544399360779 1 0.475180745124817 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18971127 chr19:18971131 synonymous SNV . 0 25 hm5C_associated_SNPs_42550 0 0 1 0 1 Nucleus 1 0.500231643921138 1 0.999536712157723 hm5C_site_41614 DeepMRMD:1;iRNA_m5C:0.999536712157723 41615 chr6 64394838 64394838 1 + G A UCEC 64394837 + 64394817 64394857 41 GTTGGGTTATTGTGAAGATGCGGAGTCTAATAGGCAGTTGG GTTGGGTTATTGTGAAGATGCAGAGTCTAATAGGCAGTTGG < 41bp 1 0.487353249644604 1 0.421457856893539 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHF3 ENSG00000118482 CDS Human protein_coding chr6:64394837 chr6:64394838 synonymous SNV . 0 22 hm5C_associated_SNPs_42551 0 0 1 0 0 Cytosol 1 0.50023164394687 1 0.999536712106261 hm5C_site_41615 DeepMRMD:1;iRNA_m5C:0.999536712106261 41616 chr6 31638950 31638950 1 + C T UCEC 31638959 + 31638939 31638979 41 TTCCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGAC TTCCCGACATCTGGACGTGCCACTTCTGCCTCGTAGAAGAC < 41bp 1 0.29150893555523 1 0.044761598110199 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638959 chr6:31638950 nonsynonymous SNV 0.067 3 12 hm5C_associated_SNPs_42552 0 0 1 0 1 chromatin 1 0.500231643923475 1 0.999536712153051 hm5C_site_41616 DeepMRMD:1;iRNA_m5C:0.999536712153051 41617 chr6 31638950 31638950 1 + C T UCEC 31638961 + 31638941 31638981 41 CCCGACATCCGGACGTGCCACTTCTGCCTCGTAGAAGACCC CCCGACATCTGGACGTGCCACTTCTGCCTCGTAGAAGACCC < 41bp 1 0.341837947709164 1 0.0358472466468811 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LY6G5B ENSG00000240053;ENSG00000263020 CDS Human other chr6:31638961 chr6:31638950 nonsynonymous SNV 0.067 3 10 hm5C_associated_SNPs_42553 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_41617 DeepMRMD:1;iRNA_m5C:0.999536712157815 41618 chr7 142459763 142459763 1 + C A UCEC 142459745 + 142459725 142459765 41 AGGAAGACTCTGAACAATGACATCATGTTAATCAAGCTCTC AGGAAGACTCTGAACAATGACATCATGTTAATCAAGCTATC < 41bp 1 0.527673262884223 1 0.0530872046947479 experiment 0.944653474231554 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459745 chr7:142459763 synonymous SNV . 0 39 hm5C_associated_SNPs_42554 0 0 0 0 0 Cytosol 1 0.500231899009907 1 0.999536201980185 hm5C_site_41618 DeepMRMD:1;iRNA_m5C:0.999536201980185 41619 chr7 142459763 142459763 1 + C A UCEC 142459748 + 142459728 142459768 41 AAGACTCTGAACAATGACATCATGTTAATCAAGCTCTCCTC AAGACTCTGAACAATGACATCATGTTAATCAAGCTATCCTC < 41bp 1 0.531449000126154 1 0.0388444066047668 experiment 0.937101999747692 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459748 chr7:142459763 synonymous SNV . 0 36 hm5C_associated_SNPs_42555 0 0 0 0 0 Cytosol 1 0.500231734854256 1 0.999536530291489 hm5C_site_41619 DeepMRMD:1;iRNA_m5C:0.999536530291489 41620 chr7 142459763 142459763 1 + C A UCEC 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATGACATCATGTTAATCAAGCTATCCTCACGTGCAGT < 41bp 1 0.505931741151542 1 0.708527088165283 experiment 0.988136517696916 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459763 synonymous SNV . 0 27 hm5C_associated_SNPs_42556 0 0 0 0 0 Cytosol 1 0.500231642779729 0.582945823669434 0.999536714440541 hm5C_site_41620 DeepMRMD:0.582945823669434;iRNA_m5C:0.999536714440541 41621 chr7 142459763 142459763 1 + C A UCEC 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATGACATCATGTTAATCAAGCTATCCTCACGTGCAGTAATC < 41bp 1 0.134447830906339 1 0.0587590336799622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459763 synonymous SNV . 0 23 hm5C_associated_SNPs_42557 0 0 0 0 0 Cytosol 1 0.500231622138451 1 0.999536755723098 hm5C_site_41621 DeepMRMD:1;iRNA_m5C:0.999536755723098 41622 chr7 142459763 142459763 1 + C A UCEC 142459765 + 142459745 142459785 41 CATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACG CATCATGTTAATCAAGCTATCCTCACGTGCAGTAATCAACG < 41bp 1 0.357665168424811 1 0.051709920167923 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459765 chr7:142459763 synonymous SNV . 0 19 hm5C_associated_SNPs_42558 0 0 0 0 0 Cytosol 1 0.500231637097217 1 0.999536725805567 hm5C_site_41622 DeepMRMD:1;iRNA_m5C:0.999536725805567 41623 chr7 142459763 142459763 1 + C A UCEC 142459766 + 142459746 142459786 41 ATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGC ATCATGTTAATCAAGCTATCCTCACGTGCAGTAATCAACGC < 41bp 1 0.455974189079032 1 0.0766177773475647 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459766 chr7:142459763 synonymous SNV . 0 18 hm5C_associated_SNPs_42559 0 0 0 0 0 Cytosol 1 0.500231455481949 1 0.999537089036103 hm5C_site_41623 DeepMRMD:1;iRNA_m5C:0.999537089036103 41624 chr7 142459763 142459763 1 + C A UCEC 142459770 + 142459750 142459790 41 TGTTAATCAAGCTCTCCTCACGTGCAGTAATCAACGCCCGC TGTTAATCAAGCTATCCTCACGTGCAGTAATCAACGCCCGC < 41bp 1 0.37293507364182 1 0.346069067716599 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459770 chr7:142459763 synonymous SNV . 0 14 hm5C_associated_SNPs_42561 0 0 0 0 0 Cytosol 1 0.5002316438994 1 0.999536712201199 hm5C_site_41624 DeepMRMD:1;iRNA_m5C:0.999536712201199 41625 chr7 142459763 142459763 1 + C A UCEC 142459781 + 142459761 142459801 41 CTCTCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCAT CTATCCTCACGTGCAGTAATCAACGCCCGCGTGTCCACCAT < 41bp 1 0.688143809720538 1 0.786357879638672 experiment 0.623712380558923 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459781 chr7:142459763 synonymous SNV . 0 3 hm5C_associated_SNPs_42563 0 0 0 0 0 Cytosol 1 0.500231643926392 0.427284240722656 0.999536712147217 hm5C_site_41625 DeepMRMD:0.427284240722656;iRNA_m5C:0.999536712147217 41626 chr10 75871763 75871763 1 + G A UCEC 75871762 + 75871742 75871782 41 GTCCCCCCTGACATGGAAGACGATTACGAACCTGAGCTGCT GTCCCCCCTGACATGGAAGACAATTACGAACCTGAGCTGCT < 41bp 1 0.0726682373934317 1 0.100912928581238 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871762 chr10:75871763 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_42564 0 0 0 0 1 Nucleus 1 0.500231643240818 1 0.999536713518365 hm5C_site_41626 DeepMRMD:1;iRNA_m5C:0.999536713518365 41627 chr3 37340487 37340487 1 + A C UCEC 37340497 + 37340477 37340517 41 TGGATGAAAGACTTCAAGAACTAGAAAAGATAAAGGTAAAA TGGATGAAAGCCTTCAAGAACTAGAAAAGATAAAGGTAAAA < 41bp 1 0.514008496267564 1 0.731858193874359 experiment 0.971983007464872 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37340497 chr3:37340487 nonsynonymous SNV 0.998 3 11 hm5C_associated_SNPs_42565 0 0 1 0 1 Cytosol 1 0.500231643920999 0.536283612251282 0.999536712158003 hm5C_site_41627 DeepMRMD:0.536283612251282;iRNA_m5C:0.999536712158003 41628 chr17 60637472 60637472 1 + A C UCEC 60637473 + 60637453 60637493 41 GTGTGACAATGAGCAAGAAACTCCTTATAGAAAAGGTTAGT GTGTGACAATGAGCAAGAACCTCCTTATAGAAAAGGTTAGT < 41bp 1 0.216922044329782 1 0.0971100032329559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TLK2 ENSG00000146872 CDS Human protein_coding chr17:60637473 chr17:60637472 nonsynonymous SNV 0.998 3 20 hm5C_associated_SNPs_42566 0 0 0 0 2 Cytosol 1 0.500226052550913 1 0.999547894898174 hm5C_site_41628 DeepMRMD:1;iRNA_m5C:0.999547894898174 41629 chr11 557927 557927 1 + G A UCEC 557932 - 557912 557952 41 TGCCTCCTGCAGCTGGCCCGCTCCTCGTGGGTGGGCCGCAT TGCCTCCTGCAGCTGGCCCGCTCCTTGTGGGTGGGCCGCAT < 41bp 1 0.340997149516046 1 0.497283816337585 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:557932 chr11:557927 nonsynonymous SNV 0.284 0 26 hm5C_associated_SNPs_42567 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41629 DeepMRMD:1;iRNA_m5C:0.999536712157815 41630 chr6 43168180 43168180 1 + C A UCEC 43168200 + 43168180 43168220 41 CTGGGCCAGATCGAAGACCACAGACGAACCCACCAACCCAT ATGGGCCAGATCGAAGACCACAGACGAACCCACCAACCCAT < 41bp 1 0.272347371557531 1 0.354589849710464 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CUL9 ENSG00000112659 CDS Human protein_coding chr6:43168200 chr6:43168180 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_42568 0 0 1 0 1 chromatin 1 0.500552605988444 1 0.998894788023111 hm5C_site_41630 DeepMRMD:1;iRNA_m5C:0.998894788023111 41631 chr13 27847398 27847398 1 + G A UCEC 27847416 + 27847396 27847436 41 TAGCCAATGAGCTGGGCAGCCTGTTCCTTGAAATTTCCACT TAACCAATGAGCTGGGCAGCCTGTTCCTTGAAATTTCCACT < 41bp 1 0.194035849504519 1 0.113515019416809 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RASL11A ENSG00000122035 CDS Human protein_coding chr13:27847416 chr13:27847398 nonsynonymous SNV 0.992 5 3 hm5C_associated_SNPs_42569 0 0 1 0 0 Ribosome 1 0.500231644153055 1 0.99953671169389 hm5C_site_41631 DeepMRMD:1;iRNA_m5C:0.99953671169389 41632 chr4 123748442 123748442 1 + G A UCEC 123748458 + 123748438 123748478 41 GGGGGCTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGA GGGGACTTCTTCCTGCGCATCCACCCCGACGGCCGAGTTGA < 41bp 1 0.133018932392923 1 0.0398847758769989 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FGF2 ENSG00000138685 CDS Human protein_coding chr4:123748458 chr4:123748442 nonsynonymous SNV 0.998 4 5 hm5C_associated_SNPs_42570 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41632 DeepMRMD:1;iRNA_m5C:0.999536712157815 41633 chr9 116972007 116972007 1 + G A UCEC 116971988 + 116971968 116972008 41 TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGA TCCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACAA < 41bp 1 0.162118842242027 1 0.739433586597443 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971988 chr9:116972007 nonsynonymous SNV 0.981 4 40 hm5C_associated_SNPs_42572 0 0 1 0 2 Nucleus 1 0.500228542254881 0.521132826805114 0.999542915490239 hm5C_site_41633 DeepMRMD:0.521132826805114;iRNA_m5C:0.999542915490239 41634 chr9 116972007 116972007 1 + G A UCEC 116971989 + 116971969 116972009 41 CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACGAG CCCAGGGCTCTTCGGCCTGCCAGGGTCTGATGGAGAACAAG < 41bp 1 0.313335437254674 1 0.705039858818054 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116971989 chr9:116972007 nonsynonymous SNV 0.981 4 39 hm5C_associated_SNPs_42573 0 0 1 0 2 Nucleus 1 0.500231643921163 0.589920282363892 0.999536712157674 hm5C_site_41634 DeepMRMD:0.589920282363892;iRNA_m5C:0.999536712157674 41635 chr22 18650778 18650778 1 + T C UCEC 18650766 + 18650746 18650786 41 CATGCTCACCCTCCCACTTTCTCTTTTTGATGTGGACTCAA CATGCTCACCCTCCCACTTTCTCTTTTTGATGCGGACTCAA < 41bp 1 0.284936658170974 1 0.113678425550461 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP18 ENSG00000184979 CDS Human protein_coding chr22:18650766 chr22:18650778 nonsynonymous SNV 0.044 0 33 hm5C_associated_SNPs_42574 0 0 0 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_41635 DeepMRMD:1;iRNA_m5C:0.999536712157812 41636 chr6 41557793 41557793 1 + G A UCEC 41557781 + 41557761 41557801 41 TTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGC TTCCCAGATGGTCTCGTGCACCCCCCGACCTCAGCCGCAGC < 41bp 1 0.116781669903749 1 0.0395050346851349 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557781 chr6:41557793 synonymous SNV . 0 33 hm5C_associated_SNPs_42576 0 0 1 0 2 Nucleus 1 0.500231643726267 1 0.999536712547466 hm5C_site_41636 DeepMRMD:1;iRNA_m5C:0.999536712547466 41637 chr2 27257073 27257073 1 + C A UCEC 27257075 + 27257055 27257095 41 AGCCAAAGAAGGTGGCAACTCCTCCCAACCAAAACCAGAAG AGCCAAAGAAGGTGGCAAATCCTCCCAACCAAAACCAGAAG < 41bp 1 0.120516462957851 1 0.301713883876801 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27257075 chr2:27257073 nonsynonymous SNV 0.003 1 19 hm5C_associated_SNPs_42577 0 0 1 0 1 Ribosome 1 0.500231643920816 1 0.999536712158368 hm5C_site_41637 DeepMRMD:1;iRNA_m5C:0.999536712158368 41638 chr19 45162148 45162148 1 + A G UCEC 45162132 + 45162112 45162152 41 TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCACTGT TCTATTGGTCCAAATGTTCCCGTGAGGTCCTTTGGCGCTGT < 41bp 1 0.676793552142939 1 0.621363997459412 experiment 0.646412895714121 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162132 chr19:45162148 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_42578 0 0 1 0 1 Ribosome 1 0.500231643921092 0.757272005081176 0.999536712157816 hm5C_site_41638 DeepMRMD:0.757272005081176;iRNA_m5C:0.999536712157816 41639 chr19 45162148 45162148 1 + A G UCEC 45162140 + 45162120 45162160 41 TCCAAATGTTCCCGTGAGGTCCTTTGGCACTGTCATCTGTG TCCAAATGTTCCCGTGAGGTCCTTTGGCGCTGTCATCTGTG < 41bp 1 0.0277139774529658 1 0.0629242360591888 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PVR ENSG00000073008 CDS Human protein_coding chr19:45162140 chr19:45162148 nonsynonymous SNV 0.000 1 29 hm5C_associated_SNPs_42579 0 0 1 0 1 Ribosome 1 0.500231640402618 1 0.999536719194764 hm5C_site_41639 DeepMRMD:1;iRNA_m5C:0.999536719194764 41640 chrX 73046027 73046027 1 + C A UCEC 73046010 - 73045990 73046030 41 GAAGAATTAGACAAGAAATACACAGATGTGCCAGACTTCTG GAATAATTAGACAAGAAATACACAGATGTGCCAGACTTCTG < 41bp 1 0.269008494355225 1 0.0677463412284851 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046010 chrX:73046027 . . 0 4 hm5C_associated_SNPs_42580 0 0 1 0 0 unknown 1 0.500279722296738 1 0.999440555406524 hm5C_site_41640 DeepMRMD:1;iRNA_m5C:0.999440555406524 41641 chrX 73046027 73046027 1 + C A UCEC 73046036 - 73046016 73046056 41 TGTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAG TGTGAAGAGATGCTCCAGGCCAATGAGAATAATTAGACAAG < 41bp 1 0.0970607820628192 1 0.150159567594528 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046036 chrX:73046027 . . 0 30 hm5C_associated_SNPs_42581 0 0 1 0 0 unknown 1 0.500231644296975 1 0.99953671140605 hm5C_site_41641 DeepMRMD:1;iRNA_m5C:0.99953671140605 41642 chr7 2686526 2686526 1 + G A UCEC 2686507 + 2686487 2686527 41 GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTCGC GCCCTGCTGCTCCTGGGGGCCGCCGCCCTGGCCTGCCTCAC < 41bp 1 0.559754331288726 1 0.764960765838623 experiment 0.880491337422549 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686507 chr7:2686526 nonsynonymous SNV 0.990 3 40 hm5C_associated_SNPs_42582 0 0 1 0 1 Ribosome 1 0.500231643921093 0.470078468322754 0.999536712157815 hm5C_site_41642 DeepMRMD:0.470078468322754;iRNA_m5C:0.999536712157815 41643 chr12 101520843 101520843 1 + C T UCEC 101520850 + 101520830 101520870 41 CCACAACGAGTGGCCGTGACCATGTAGGTGAGAGGTGTGCT CCACAACGAGTGGTCGTGACCATGTAGGTGAGAGGTGTGCT < 41bp 1 0.422872825128595 1 0.329457938671112 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANO4 ENSG00000151572 CDS Human protein_coding chr12:101520850 chr12:101520843 nonsynonymous SNV 0.982 4 14 hm5C_associated_SNPs_42583 0 0 0 0 2 exosome 1 0.500231687834196 1 0.999536624331608 hm5C_site_41643 DeepMRMD:1;iRNA_m5C:0.999536624331608 41644 chr1 20231420 20231420 1 + A C UCEC 20231415 + 20231395 20231435 41 AATAGTCCAGAACCTGGAAGCTGAAAATTATAATATTGAAT AATAGTCCAGAACCTGGAAGCTGAACATTATAATATTGAAT < 41bp 1 0.259258936116315 1 0.382936477661133 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20231415 chr1:20231420 nonsynonymous SNV 1.000 0 26 hm5C_associated_SNPs_42584 0 0 1 0 2 Cytosol 1 0.500231643935251 1 0.999536712129498 hm5C_site_41644 DeepMRMD:1;iRNA_m5C:0.999536712129498 41645 chr5 131973782 131973782 1 + A G UCEC 131973793 + 131973773 131973813 41 ATATTGAATACATAGAAATACGGTCTGATGCCGATGAAAAT ATATTGAATGCATAGAAATACGGTCTGATGCCGATGAAAAT < 41bp 1 0.105391431402809 1 0.147036492824554 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131973793 chr5:131973782 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_42585 0 0 1 0 1 Cytosol 1 0.500231643937857 1 0.999536712124285 hm5C_site_41645 DeepMRMD:1;iRNA_m5C:0.999536712124285 41646 chr11 123989019 123989019 1 + G A UCEC 123989020 + 123989000 123989040 41 CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATGTGC CCAACCTGGGTCGAAGGCGACAGTCACCCTGAAGTATGTGC < 41bp 1 0.176857076388443 1 0.159833520650864 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VWA5A ENSG00000110002 CDS Human protein_coding chr11:123989020 chr11:123989019 nonsynonymous SNV 0.106 0 20 hm5C_associated_SNPs_42586 0 0 0 0 1 nucleus 1 0.50023164392109 1 0.99953671215782 hm5C_site_41646 DeepMRMD:1;iRNA_m5C:0.99953671215782 41647 chr19 39944008 39944008 1 + C T UCEC 39944021 + 39944001 39944041 41 CGAAGAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAG CGAAGAGTGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAG < 41bp 1 0.654253393380366 1 0.831600666046143 experiment 0.691493213239267 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944021 chr19:39944008 nonsynonymous SNV 0.771 2 8 hm5C_associated_SNPs_42587 0 0 1 0 1 Nucleus 1 0.500231643921093 0.336798667907714 0.999536712157814 hm5C_site_41647 DeepMRMD:0.336798667907714;iRNA_m5C:0.999536712157814 41648 chr19 39944008 39944008 1 + C T UCEC 39944025 + 39944005 39944045 41 GAGCGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC GAGTGGCGGAGTGCAGCGGGCAGTGAGAAAGAAGAAGAGCC < 41bp 1 0.352000085085906 1 0.416242837905884 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944025 chr19:39944008 nonsynonymous SNV 0.771 2 4 hm5C_associated_SNPs_42588 0 0 1 0 1 Nucleus 1 0.500231639458245 1 0.999536721083509 hm5C_site_41648 DeepMRMD:1;iRNA_m5C:0.999536721083509 41649 chr20 37078069 37078069 1 + G A UCEC 37078054 + 37078034 37078074 41 CGGGCTGCCTGTGCTCTGGTCATCAATAACGCAGGGAGAGG CGGGCTGCCTGTGCTCTGGTCATCAATAACGCAGGAAGAGG < 41bp 1 0.258641562245139 1 0.0736136436462402 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA60 ENSG00000199266 ncRNA_exonic Human snoRNA chr20:37078054 chr20:37078069 . . 0 36 hm5C_associated_SNPs_42589 0 0 1 0 0 unknown 1 0.50023162817488 1 0.999536743650241 hm5C_site_41649 DeepMRMD:1;iRNA_m5C:0.999536743650241 41650 chr12 57919755 57919755 1 + T C UCEC 57919754 + 57919734 57919774 41 CCAAGGCACAGCATCCCCCACTACCCCCTCCCAGCACTTTA CCAAGGCACAGCATCCCCCACCACCCCCTCCCAGCACTTTA < 41bp 1 0.0411809080466732 1 0.1813023686409 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919754 chr12:57919755 nonsynonymous SNV 0.990 1 22 hm5C_associated_SNPs_42590 0 0 1 0 0 chromatin 1 0.500216236499964 1 0.999567527000073 hm5C_site_41650 DeepMRMD:1;iRNA_m5C:0.999567527000073 41651 chr19 3525941 3525941 1 + A C UCEC 3525949 + 3525929 3525969 41 GGAGACCGCTTCATCCCCTCCAGAGCCGGAGCCAACTGGAG GGAGACCGCTTCCTCCCCTCCAGAGCCGGAGCCAACTGGAG < 41bp 1 0.433109378548596 1 0.834765076637268 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525949 chr19:3525941 nonsynonymous SNV 0.983 4 13 hm5C_associated_SNPs_42592 0 0 1 0 2 Ribosome 1 0.500231643921092 0.330469846725464 0.999536712157815 hm5C_site_41651 DeepMRMD:0.330469846725464;iRNA_m5C:0.999536712157815 41652 chr3 49736445 49736445 1 + A G UCEC 49736459 + 49736439 49736479 41 TTGAGAACCTGTCCAGGGGCCTGGGTATGGCCTACTTCCCA TTGAGAGCCTGTCCAGGGGCCTGGGTATGGCCTACTTCCCA < 41bp 1 0.557704395532724 1 0.1335229575634 experiment 0.884591208934553 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49736459 chr3:49736445 nonsynonymous SNV 0.943 2 7 hm5C_associated_SNPs_42593 0 0 1 0 1 Nucleus 1 0.500231643772164 1 0.999536712455673 hm5C_site_41652 DeepMRMD:1;iRNA_m5C:0.999536712455673 41653 chr7 21631035 21631035 1 + T C UCEC 21631019 + 21630999 21631039 41 AGCACAGAGTTGAGCGCACACAGAAAAACGTGAAGGTGATC AGCACAGAGTTGAGCGCACACAGAAAAACGTGAAGGCGATC < 41bp 1 0.568197266561856 1 0.467863440513611 experiment 0.863605466876288 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21631019 chr7:21631035 nonsynonymous SNV 0.002 0 37 hm5C_associated_SNPs_42594 0 0 0 0 0 nucleolus 1 0.500231643879784 1 0.999536712240433 hm5C_site_41653 DeepMRMD:1;iRNA_m5C:0.999536712240433 41654 chr2 128944280 128944280 1 + T G UCEC 128944260 + 128944240 128944280 41 TTTTTTTAACCAAACAGGATCTGCCCAATAACATGATTCAT TTTTTTTAACCAAACAGGATCTGCCCAATAACATGATTCAG < 41bp 1 0.0470397378806748 1 0.168133944272995 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128944260 chr2:128944280 nonsynonymous SNV 0.998 4 41 hm5C_associated_SNPs_42595 0 0 1 0 2 Nucleus 1 0.500231643978472 1 0.999536712043056 hm5C_site_41654 DeepMRMD:1;iRNA_m5C:0.999536712043056 41655 chr18 34289063 34289063 1 + G A UCEC 34289065 + 34289045 34289085 41 TTGTCTCCACCAGCAAGTGCCGGGGATCCTGAACCCGAATC TTGTCTCCACCAGCAAGTACCGGGGATCCTGAACCCGAATC < 41bp 1 0.672592724392766 1 0.911352753639221 experiment 0.654814551214469 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34289065 chr18:34289063 nonsynonymous SNV 0.099 0 19 hm5C_associated_SNPs_42596 0 0 0 0 1 exosome 1 0.50023164383956 0.177294492721558 0.99953671232088 hm5C_site_41655 DeepMRMD:0.177294492721558;iRNA_m5C:0.99953671232088 41656 chr22 42262989 42262989 1 + C T UCEC 42263002 + 42262982 42263022 41 GCAGCAGCGGAGCTGTGGACCCTTCAGTGCAACGGTCATTC GCAGCAGTGGAGCTGTGGACCCTTCAGTGCAACGGTCATTC < 41bp 1 0.0270786656934844 1 0.0256856083869934 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42263002 chr22:42262989 synonymous SNV . 0 8 hm5C_associated_SNPs_42597 0 0 1 0 0 Ribosome 1 0.500231620310523 1 0.999536759378955 hm5C_site_41656 DeepMRMD:1;iRNA_m5C:0.999536759378955 41657 chr3 51315081 51315081 1 + C A UCEC 51315093 + 51315073 51315113 41 TGGAGAGCCTCCTGGACGTGCTCTTGCAGACTCTGCTCACC TGGAGAGCATCCTGGACGTGCTCTTGCAGACTCTGCTCACC < 41bp 1 0.101654584656181 1 0.0538749098777771 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOCK3 ENSG00000088538 CDS Human protein_coding chr3:51315093 chr3:51315081 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_42598 0 0 1 0 1 Cytosol 1 0.500231645774365 1 0.999536708451271 hm5C_site_41657 DeepMRMD:1;iRNA_m5C:0.999536708451271 41658 chrX 73041555 73041555 1 + G C UCEC 73041535 - 73041515 73041555 41 CCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAGGA GCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAGGA < 41bp 1 0.128792389196679 1 0.0893210172653198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041535 chrX:73041555 . . 0 1 hm5C_associated_SNPs_42599 0 0 1 1 0 unknown 1 0.500231643921112 1 0.999536712157776 hm5C_site_41658 DeepMRMD:1;iRNA_m5C:0.999536712157776 41659 chrX 73041555 73041555 1 + G C UCEC 73041537 - 73041517 73041557 41 GACCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAG GAGCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAG < 41bp 1 0.0873780742209063 1 0.0961666107177734 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041537 chrX:73041555 . . 0 3 hm5C_associated_SNPs_42600 0 0 1 1 0 unknown 1 0.500231643964845 1 0.99953671207031 hm5C_site_41659 DeepMRMD:1;iRNA_m5C:0.99953671207031 41660 chrX 73041555 73041555 1 + G C UCEC 73041549 - 73041529 73041569 41 TGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACTCACAG TGGCTGGGCTTTGAGCTTTTCCGTTTTTAAATCACTCACAG < 41bp 1 0.0776296505867938 1 0.114622473716736 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041549 chrX:73041555 . . 0 15 hm5C_associated_SNPs_42601 0 0 1 1 0 unknown 1 0.500231639167251 1 0.999536721665498 hm5C_site_41660 DeepMRMD:1;iRNA_m5C:0.999536721665498 41661 chrX 73041555 73041555 1 + G C UCEC 73041554 - 73041534 73041574 41 AGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACT AGGCCTGGCTGGGCTTTGAGCTTTTCCGTTTTTAAATCACT < 41bp 1 0.00971162047301388 1 0.123138964176178 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041554 chrX:73041555 . . 0 20 hm5C_associated_SNPs_42602 0 0 1 1 0 unknown 1 0.500238102794657 1 0.999523794410687 hm5C_site_41661 DeepMRMD:1;iRNA_m5C:0.999523794410687 41662 chrX 73041555 73041555 1 + G C UCEC 73041561 - 73041541 73041581 41 TAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTA TAAATGTAGGCCTGGCTGGGCTTTGAGCTTTTCCGTTTTTA < 41bp 1 0.0323969848577781 1 0.0608313083648682 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041561 chrX:73041555 . . 0 27 hm5C_associated_SNPs_42603 0 0 1 1 0 unknown 1 0.500231643921097 1 0.999536712157806 hm5C_site_41662 DeepMRMD:1;iRNA_m5C:0.999536712157806 41663 chrX 73041555 73041555 1 + G C UCEC 73041566 - 73041546 73041586 41 TTCTCTAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGT TTCTCTAAATGTAGGCCTGGCTGGGCTTTGAGCTTTTCCGT < 41bp 1 0.509193781134427 1 0.251679718494415 experiment 0.981612437731146 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73041566 chrX:73041555 . . 0 32 hm5C_associated_SNPs_42604 0 0 1 1 0 unknown 1 0.500231643861134 1 0.999536712277733 hm5C_site_41663 DeepMRMD:1;iRNA_m5C:0.999536712277733 41664 chr20 55049753 55049753 1 + G A UCEC 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT ATCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT < 41bp 1 0.113756948904113 1 0.145820409059525 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049753 nonsynonymous SNV 0.954 0 1 hm5C_associated_SNPs_42605 0 0 1 0 2 Ribosome 1 0.500231643921226 1 0.999536712157548 hm5C_site_41664 DeepMRMD:1;iRNA_m5C:0.999536712157548 41665 chr7 44100376 44100376 1 + C T UCEC 44100392 + 44100372 44100412 41 GCAGCCGACGACACAGAGATCTCCTTTGACCCCGAGAACCT GCAGTCGACGACACAGAGATCTCCTTTGACCCCGAGAACCT < 41bp 1 0.52135883301081 1 0.343518793582916 experiment 0.957282333978381 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44100392 chr7:44100376 nonsynonymous SNV 0.167 3 5 hm5C_associated_SNPs_42607 0 0 1 0 1 Ribosome 1 0.500231643920081 1 0.999536712159839 hm5C_site_41665 DeepMRMD:1;iRNA_m5C:0.999536712159839 41666 chr12 109604770 109604770 1 + G A UCEC 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCACACACTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG < 41bp 1 0.541686739575447 1 0.752779722213745 experiment 0.916626520849106 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604770 nonsynonymous SNV 0.975 3 7 hm5C_associated_SNPs_42608 0 0 1 0 1 Nucleus 1 0.500231643928518 0.49444055557251 0.999536712142964 hm5C_site_41666 DeepMRMD:0.49444055557251;iRNA_m5C:0.999536712142964 41667 chr18 77802168 77802168 1 + T C UCEC 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT CTTTTGATGTCCCAGCAGACCCTGAGGAACGTGCCACCGAT < 41bp 1 0.57334642798511 1 0.176421970129013 experiment 0.85330714402978 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802168 synonymous SNV . 0 30 hm5C_associated_SNPs_42609 0 0 1 0 2 Ribosome 1 0.500231643920613 1 0.999536712158774 hm5C_site_41667 DeepMRMD:1;iRNA_m5C:0.999536712158774 41668 chr7 98528424 98528424 1 + C A UCEC 98528441 + 98528421 98528461 41 CTTCTCTTTGTCATGATGGACTTAACTGGAGAGGTAGGTGA CTTATCTTTGTCATGATGGACTTAACTGGAGAGGTAGGTGA < 41bp 1 0.103495836038603 1 0.0800579488277435 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98528441 chr7:98528424 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_42611 0 0 1 0 1 Nucleus 1 0.500231598999896 1 0.999536802000207 hm5C_site_41668 DeepMRMD:1;iRNA_m5C:0.999536802000207 41669 chr10 76729436 76729436 1 + A C UCEC 76729423 + 76729403 76729443 41 TTTTTATTCTCATAGGACACCCATCCTGTTTGAAATTTTGT TTTTTATTCTCATAGGACACCCATCCTGTTTGACATTTTGT < 41bp 1 0.00306168844661873 1 0.0770283043384552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KAT6B ENSG00000156650 CDS Human protein_coding chr10:76729423 chr10:76729436 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_42612 0 0 1 0 2 Nucleus 1 0.500232119198995 1 0.99953576160201 hm5C_site_41669 DeepMRMD:1;iRNA_m5C:0.99953576160201 41670 chr9 96427992 96427992 1 + G A UCEC 96427976 + 96427956 96427996 41 CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCGACGAGCC CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCGACAAGCC < 41bp 1 0.128858466187671 1 0.10044914484024 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96427976 chr9:96427992 synonymous SNV . 0 37 hm5C_associated_SNPs_42613 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41670 DeepMRMD:1;iRNA_m5C:0.999536712157815 41671 chr11 68125236 68125236 1 + G A UCEC 68125248 + 68125228 68125268 41 TGACCATCGACCTGGAGGAGCAGAAGCTCTACTGGGCTGAC TGACCATCAACCTGGAGGAGCAGAAGCTCTACTGGGCTGAC < 41bp 1 0.398657101750798 1 0.49801766872406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68125248 chr11:68125236 nonsynonymous SNV 0.993 4 9 hm5C_associated_SNPs_42614 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643910971 1 0.999536712178057 hm5C_site_41671 DeepMRMD:1;iRNA_m5C:0.999536712178057 41672 chr16 70589085 70589085 1 + G A UCEC 70589071 + 70589051 70589091 41 AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAGCTGGTC AGCGACAAGTGGTGATTGCCCTGACAGGAGGAGAACTGGTC < 41bp 1 0.27872067714265 1 0.170178830623627 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589071 chr16:70589085 synonymous SNV . 0 35 hm5C_associated_SNPs_42615 0 0 1 0 1 Cytosol 1 0.500231737196001 1 0.999536525607998 hm5C_site_41672 DeepMRMD:1;iRNA_m5C:0.999536525607998 41673 chr16 70589085 70589085 1 + G A UCEC 70589086 + 70589066 70589106 41 TTGCCCTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGAT TTGCCCTGACAGGAGGAGAACTGGTCTATTTCGAGATGGAT < 41bp 1 0.249773827392358 1 0.187183886766434 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589086 chr16:70589085 synonymous SNV . 0 20 hm5C_associated_SNPs_42616 0 0 1 0 1 Cytosol 1 0.500231643918991 1 0.999536712162017 hm5C_site_41673 DeepMRMD:1;iRNA_m5C:0.999536712162017 41674 chr16 70589085 70589085 1 + G A UCEC 70589091 + 70589071 70589111 41 CTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGATCCTGT CTGACAGGAGGAGAACTGGTCTATTTCGAGATGGATCCTGT < 41bp 1 0.0915385305607325 1 0.07593634724617 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589091 chr16:70589085 synonymous SNV . 0 15 hm5C_associated_SNPs_42617 0 0 1 0 1 Cytosol 1 0.500232071357729 1 0.999535857284543 hm5C_site_41674 DeepMRMD:1;iRNA_m5C:0.999535857284543 41675 chr3 5215727 5215727 1 + A G UCEC 5215729 + 5215709 5215749 41 TGCTTGGAAACAAGAGAGATCTTCCTAATGCCTTGGATGAG TGCTTGGAAACAAGAGAGGTCTTCCTAATGCCTTGGATGAG < 41bp 1 0.0798117041178507 1 0.0536289513111115 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ARL8B ENSG00000134108 CDS Human protein_coding chr3:5215729 chr3:5215727 nonsynonymous SNV 1.000 5 19 hm5C_associated_SNPs_42618 0 0 1 0 2 Ribosome 1 0.500231643837516 1 0.999536712324968 hm5C_site_41675 DeepMRMD:1;iRNA_m5C:0.999536712324968 41676 chr12 112915759 112915759 1 + G A UCEC 112915765 + 112915745 112915785 41 GACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGAT GACTTTTGGCGGATAGTGTTCCAAGAAAACTCCCGAGTGAT < 41bp 1 0.284589537212332 1 0.271362066268921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915765 chr12:112915759 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_42619 0 0 1 0 2 Ribosome 1 0.500231644128011 1 0.999536711743977 hm5C_site_41676 DeepMRMD:1;iRNA_m5C:0.999536711743977 41677 chr1 7861184 7861184 1 + C T UCEC 7861204 + 7861184 7861224 41 CCAGTGAATAAAAGAATCTTCACCACCACACACACCCCAGG TCAGTGAATAAAAGAATCTTCACCACCACACACACCCCAGG < 41bp 1 0.601590341181694 1 0.438605219125748 experiment 0.796819317636613 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PER3 ENSG00000049246 CDS Human protein_coding chr1:7861204 chr1:7861184 nonsynonymous SNV 0.928 4 1 hm5C_associated_SNPs_42621 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41677 DeepMRMD:1;iRNA_m5C:0.999536712157815 41678 chr6 4935981 4935981 1 + A G UCEC 4935980 + 4935960 4936000 41 CTTGTTATCCACAAAGTCCTCAGAGAATAACTCACTAAATC CTTGTTATCCACAAAGTCCTCGGAGAATAACTCACTAAATC < 41bp 1 0.694985945967313 1 0.857805252075195 experiment 0.610028108065373 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4935980 chr6:4935981 synonymous SNV . 0 22 hm5C_associated_SNPs_42622 0 0 1 0 1 Cytoplasm 1 0.500231643921092 0.28438949584961 0.999536712157815 hm5C_site_41678 DeepMRMD:0.28438949584961;iRNA_m5C:0.999536712157815 41679 chr19 50912082 50912082 1 + C A UCEC 50912092 + 50912072 50912112 41 CTTCTCCTCGCTGTACCCGTCCATCATGATGGCCCACAACC CTTCTCCTCGATGTACCCGTCCATCATGATGGCCCACAACC < 41bp 1 0.0236484174951916 1 0.0264444053173065 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912092 chr19:50912082 nonsynonymous SNV 0.937 4 11 hm5C_associated_SNPs_42623 0 0 1 0 2 Nucleus 1 0.500231611841476 1 0.999536776317048 hm5C_site_41679 DeepMRMD:1;iRNA_m5C:0.999536776317048 41680 chr12 53647860 53647860 1 + C T UCEC 53647877 + 53647857 53647897 41 CTGCTGTCATGGTGATGGCTCTGCTGGCAGTGGTGGGACTC CTGTTGTCATGGTGATGGCTCTGCTGGCAGTGGTGGGACTC < 41bp 1 0.597288132959038 1 0.391644418239594 experiment 0.805423734081924 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MFSD5 ENSG00000182544 CDS Human protein_coding chr12:53647877 chr12:53647860 nonsynonymous SNV 0.996 0 4 hm5C_associated_SNPs_42625 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643922652 1 0.999536712154697 hm5C_site_41680 DeepMRMD:1;iRNA_m5C:0.999536712154697 41681 chr15 69003166 69003166 1 + C A UCEC 69003148 + 69003128 69003168 41 CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTCGA CTGGAGCTGCACGGGCACAGCCGGCGTGTGGGGCTGGTAGA < 41bp 1 0.531441576799187 1 0.497710168361664 experiment 0.937116846401627 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CORO2B ENSG00000103647 CDS Human protein_coding chr15:69003148 chr15:69003166 synonymous SNV . 0 39 hm5C_associated_SNPs_42626 0 0 0 0 2 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_41681 DeepMRMD:1;iRNA_m5C:0.999536712157815 41682 chr8 145140264 145140264 1 + C T UCEC 145140252 + 145140232 145140272 41 CACAGGCCATGGGACTGGCCCTCTATGTCCTGCCAGTGCTG CACAGGCCATGGGACTGGCCCTCTATGTCCTGTCAGTGCTG < 41bp 1 0.564543424167308 1 0.753306031227112 experiment 0.870913151665385 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145140252 chr8:145140264 nonsynonymous SNV 0.792 4 33 hm5C_associated_SNPs_42627 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921086 0.493387937545776 0.999536712157827 hm5C_site_41682 DeepMRMD:0.493387937545776;iRNA_m5C:0.999536712157827 41683 chr10 102684005 102684005 1 + G A UCEC 102684010 + 102683990 102684030 41 ATTCTGGCAATTCTGGCCACCATTCTACCAGGAATAGTGAC ATTCTGGCAATTCTGACCACCATTCTACCAGGAATAGTGAC < 41bp 1 0.0285633615265114 1 0.363856196403503 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SLF2 ENSG00000119906 CDS Human protein_coding chr10:102684010 chr10:102684005 nonsynonymous SNV 0.990 3 16 hm5C_associated_SNPs_42628 0 0 1 0 0 Nucleus 1 0.500231646595596 1 0.999536706808808 hm5C_site_41683 DeepMRMD:1;iRNA_m5C:0.999536706808808 41684 chr1 114483616 114483616 1 + T C UCEC 114483612 + 114483592 114483632 41 TAGGCCGGGGGACATTTGGACAGGTGGCTAAGTGCTGGAAG TAGGCCGGGGGACATTTGGACAGGCGGCTAAGTGCTGGAAG < 41bp 1 0.570668363301706 1 0.619864106178284 experiment 0.858663273396587 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114483612 chr1:114483616 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_42630 0 0 1 0 0 Cytosol 1 0.500231643921092 0.760271787643432 0.999536712157815 hm5C_site_41684 DeepMRMD:0.760271787643432;iRNA_m5C:0.999536712157815 41685 chr1 120286589 120286589 1 + G A UCEC 120286594 + 120286574 120286614 41 ACCTGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCT ACCTGGCACGTCATGAGCATCTCCTCCTTGCTGCCCAGCCT < 41bp 1 0.477433402032281 1 0.226268261671066 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286594 chr1:120286589 nonsynonymous SNV 0.999 1 16 hm5C_associated_SNPs_42631 0 0 1 0 1 Ribosome 1 0.50023164392103 1 0.99953671215794 hm5C_site_41685 DeepMRMD:1;iRNA_m5C:0.99953671215794 41686 chr1 120286589 120286589 1 + G A UCEC 120286596 + 120286576 120286616 41 CTGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGG CTGGCACGTCATGAGCATCTCCTCCTTGCTGCCCAGCCTGG < 41bp 1 0.109570422897883 1 0.0671021938323975 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286596 chr1:120286589 nonsynonymous SNV 0.999 1 14 hm5C_associated_SNPs_42632 0 0 1 0 1 Ribosome 1 0.500231643913359 1 0.999536712173282 hm5C_site_41686 DeepMRMD:1;iRNA_m5C:0.999536712173282 41687 chr1 120286589 120286589 1 + G A UCEC 120286597 + 120286577 120286617 41 TGGCACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGA TGGCACGTCATGAGCATCTCCTCCTTGCTGCCCAGCCTGGA < 41bp 1 0.472436851440958 1 0.228120416402817 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286597 chr1:120286589 nonsynonymous SNV 0.999 1 13 hm5C_associated_SNPs_42633 0 0 1 0 1 Ribosome 1 0.500231643886765 1 0.99953671222647 hm5C_site_41687 DeepMRMD:1;iRNA_m5C:0.99953671222647 41688 chr1 120286589 120286589 1 + G A UCEC 120286600 + 120286580 120286620 41 CACGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGAAGC CACGTCATGAGCATCTCCTCCTTGCTGCCCAGCCTGGAAGC < 41bp 1 0.306410307448295 1 0.220518678426743 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286600 chr1:120286589 nonsynonymous SNV 0.999 1 10 hm5C_associated_SNPs_42634 0 0 1 0 1 Ribosome 1 0.500231634383111 1 0.999536731233777 hm5C_site_41688 DeepMRMD:1;iRNA_m5C:0.999536731233777 41689 chr22 37425550 37425550 1 + C T UCEC 37425537 + 37425517 37425557 41 GAGGATGTCATCTCAGAGGGCCGGGGGAAGACCCACTGAAG GAGGATGTCATCTCAGAGGGCCGGGGGAAGACCTACTGAAG < 41bp 1 0.623462522833759 1 0.845639884471893 experiment 0.753074954332483 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MPST ENSG00000128309 CDS Human protein_coding chr22:37425537 chr22:37425550 nonsynonymous SNV 0.561 0 34 hm5C_associated_SNPs_42635 0 0 1 0 0 chromatin 1 0.500231643921092 0.308720231056214 0.999536712157815 hm5C_site_41689 DeepMRMD:0.308720231056214;iRNA_m5C:0.999536712157815 41690 chr15 99491893 99491893 1 + G T UCEC 99491873 + 99491853 99491893 41 ACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATG ACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATT < 41bp 1 0.216212172345475 1 0.193023979663849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491873 chr15:99491893 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_42637 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_41690 DeepMRMD:1;iRNA_m5C:0.999536712157815 41691 chr15 99491893 99491893 1 + G T UCEC 99491899 + 99491879 99491919 41 CTTCGCTTCGTCATGGAGGGCGGCCTTCTGGACAAGCCAGA CTTCGCTTCGTCATTGAGGGCGGCCTTCTGGACAAGCCAGA < 41bp 1 0.175150622225544 1 0.172218233346939 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99491899 chr15:99491893 nonsynonymous SNV 1.000 2 15 hm5C_associated_SNPs_42638 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_41691 DeepMRMD:1;iRNA_m5C:0.999536712157815 41692 chr13 28752064 28752064 1 + A T UCEC 28752051 + 28752031 28752071 41 TTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAA TTTAATGACTTTGGTGCCCTCAACATCTCTCAGTGACGAAA < 41bp 1 0.616624680734577 1 0.244082778692245 experiment 0.766750638530845 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752051 chr13:28752064 stopgain 1.000 1 34 hm5C_associated_SNPs_42639 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41692 DeepMRMD:1;iRNA_m5C:0.999536712157815 41693 chr13 28752064 28752064 1 + A T UCEC 28752054 + 28752034 28752074 41 AATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGT AATGACTTTGGTGCCCTCAACATCTCTCAGTGACGAAAGGT < 41bp 1 0.0990036165996404 1 0.194623470306396 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752054 chr13:28752064 stopgain 1.000 1 31 hm5C_associated_SNPs_42640 0 0 1 0 2 Ribosome 1 0.500231643919511 1 0.999536712160978 hm5C_site_41693 DeepMRMD:1;iRNA_m5C:0.999536712160978 41694 chr13 28752064 28752064 1 + A T UCEC 28752057 + 28752037 28752077 41 GACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGG GACTTTGGTGCCCTCAACATCTCTCAGTGACGAAAGGTAGG < 41bp 1 0.124551478202074 1 0.120750308036804 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752057 chr13:28752064 stopgain 1.000 1 28 hm5C_associated_SNPs_42641 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41694 DeepMRMD:1;iRNA_m5C:0.999536712157815 41695 chr13 28752064 28752064 1 + A T UCEC 28752059 + 28752039 28752079 41 CTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTG CTTTGGTGCCCTCAACATCTCTCAGTGACGAAAGGTAGGTG < 41bp 1 0.537163135307791 1 0.186867296695709 experiment 0.925673729384418 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752059 chr13:28752064 stopgain 1.000 1 26 hm5C_associated_SNPs_42642 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41695 DeepMRMD:1;iRNA_m5C:0.999536712157815 41696 chr13 28752064 28752064 1 + A T UCEC 28752061 + 28752041 28752081 41 TTGGTGCCCTCAACATCTCTCAGAGACGAAAGGTAGGTGAA TTGGTGCCCTCAACATCTCTCAGTGACGAAAGGTAGGTGAA < 41bp 1 0.326107102824074 1 0.622917652130127 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PAN3 ENSG00000152520 CDS Human protein_coding chr13:28752061 chr13:28752064 stopgain 1.000 1 24 hm5C_associated_SNPs_42643 0 0 1 0 2 Ribosome 1 0.500231643921092 0.754164695739746 0.999536712157815 hm5C_site_41696 DeepMRMD:0.754164695739746;iRNA_m5C:0.999536712157815 41697 chr1 155288063 155288063 1 + T C UCEC 155288044 + 155288024 155288064 41 TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCCG < 41bp 1 0.248578239314483 1 0.304238379001617 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155288044 chr1:155288063 nonsynonymous SNV 0.995 2 40 hm5C_associated_SNPs_42644 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41697 DeepMRMD:1;iRNA_m5C:0.999536712157815 41698 chr17 2266378 2266378 1 + C T UCEC 2266362 + 2266342 2266382 41 CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGG CCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCTGGGG < 41bp 1 0.123949609612978 1 0.367151170969009 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266362 chr17:2266378 nonsynonymous SNV 0.975 2 37 hm5C_associated_SNPs_42645 0 0 1 0 2 Cytosol 1 0.500231641674471 1 0.999536716651057 hm5C_site_41698 DeepMRMD:1;iRNA_m5C:0.999536716651057 41699 chr17 2266378 2266378 1 + C T UCEC 2266363 + 2266343 2266383 41 CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGGT CCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCTGGGGT < 41bp 1 0.452764756443218 1 0.751694858074188 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266363 chr17:2266378 nonsynonymous SNV 0.975 2 36 hm5C_associated_SNPs_42646 0 0 1 0 2 Cytosol 1 0.500231653325455 0.496610283851624 0.999536693349089 hm5C_site_41699 DeepMRMD:0.496610283851624;iRNA_m5C:0.999536693349089 41700 chr5 131607115 131607115 1 + G A UCEC 131607104 + 131607084 131607124 41 GAGCCCGTGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG GAGCCCGTGGCCGCGGAGCCCAAGCAGTCAGACTCCTTCCG < 41bp 1 0.63066572255302 1 0.314585030078888 experiment 0.738668554893959 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607104 chr5:131607115 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_42647 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41700 DeepMRMD:1;iRNA_m5C:0.999536712157815 41701 chr16 5123003 5123003 1 + G A UCEC 5122983 + 5122963 5123003 41 CATGATGAGCTCTTGCAGAACAACAGAATTCAGATTGTGGG CATGATGAGCTCTTGCAGAACAACAGAATTCAGATTGTGGA < 41bp 1 0.483980563515776 1 0.188659489154816 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5122983 chr16:5123003 nonsynonymous SNV 0.022 0 41 hm5C_associated_SNPs_42648 0 0 1 0 2 Ribosome 1 0.500234703791984 1 0.999530592416031 hm5C_site_41701 DeepMRMD:1;iRNA_m5C:0.999530592416031 41702 chr6 18213962 18213962 1 + A G UCEC 18213957 + 18213937 18213977 41 TGACTTTTTTGGTCACGTTCCTCCCAGTGCCAGCAAGCGAG TGACTTTTTTGGTCACGTTCCTCCCGGTGCCAGCAAGCGAG < 41bp 1 0.522763130392575 1 0.303245306015015 experiment 0.954473739214851 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213957 chr6:18213962 nonsynonymous SNV 0.995 2 26 hm5C_associated_SNPs_42650 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41702 DeepMRMD:1;iRNA_m5C:0.999536712157815 41703 chr7 44098981 44098981 1 + G A UCEC 44098968 + 44098948 44098988 41 TGCAGGCAAGCTGAGGAGCCCCTTCCTGCAGAAGCAGCTCA TGCAGGCAAGCTGAGGAGCCCCTTCCTGCAGAAACAGCTCA < 41bp 1 0.0168717739369199 1 0.0306969285011292 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44098968 chr7:44098981 synonymous SNV . 0 34 hm5C_associated_SNPs_42652 0 0 1 0 1 Ribosome 1 0.50023230503259 1 0.99953538993482 hm5C_site_41703 DeepMRMD:1;iRNA_m5C:0.99953538993482 41704 chr6 87865419 87865419 1 + G A UCEC 87865437 + 87865417 87865457 41 GCGGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACCGACT GCAGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACCGACT < 41bp 1 0.458489409397047 1 0.23932158946991 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF292 ENSG00000188994 CDS Human protein_coding chr6:87865437 chr6:87865419 nonsynonymous SNV 0.991 0 3 hm5C_associated_SNPs_42653 0 0 1 0 1 Cytosol 1 0.500231643860407 1 0.999536712279187 hm5C_site_41704 DeepMRMD:1;iRNA_m5C:0.999536712279187 41705 chr12 132589441 132589441 1 + C T UCEC 132589422 + 132589402 132589442 41 GCCCCTGGGCTTCGAGAGGACGCCCGGCGTGCTGCTCCCCG GCCCCTGGGCTTCGAGAGGACGCCCGGCGTGCTGCTCCCTG < 41bp 1 0.550990060482583 1 0.086250364780426 experiment 0.898019879034834 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EP400NL ENSG00000185684 CDS Human protein_coding chr12:132589422 chr12:132589441 synonymous SNV . 0 40 hm5C_associated_SNPs_42655 0 0 1 0 0 chromatin 1 0.500231643921792 1 0.999536712156416 hm5C_site_41705 DeepMRMD:1;iRNA_m5C:0.999536712156416 41706 chr16 29853333 29853333 1 + C T UCEC 29853323 + 29853303 29853343 41 GCTGGGCGGCCCAAGCGTCCCCATGCCCGCCGTGCGCTCTG GCTGGGCGGCCCAAGCGTCCCCATGCCCGCTGTGCGCTCTG < 41bp 1 0.281397685715762 1 0.162575453519821 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29853323 chr16:29853333 nonsynonymous SNV 0.993 3 31 hm5C_associated_SNPs_42656 0 0 0 1 0 Nucleus 1 0.500231643962516 1 0.999536712074969 hm5C_site_41706 DeepMRMD:1;iRNA_m5C:0.999536712074969 41707 chr21 47983777 47983777 1 + C T UCEC 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG TCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG < 41bp 1 0.325740068748677 1 0.256418168544769 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983777 nonsynonymous SNV 0.771 4 1 hm5C_associated_SNPs_42657 0 0 1 0 2 Cytosol 1 0.501262848840578 1 0.997474302318844 hm5C_site_41707 DeepMRMD:1;iRNA_m5C:0.997474302318844 41708 chr19 18255950 18255950 1 + A G UCEC 18255949 + 18255929 18255969 41 CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG CGGCCCCCCATCGTTATCCACGGCTCTGGCAAGAAGTACGG < 41bp 1 0.300997899949644 1 0.051302969455719 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255949 chr19:18255950 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_42658 0 0 0 0 1 Cytosol 1 0.500245378836065 1 0.999509242327869 hm5C_site_41708 DeepMRMD:1;iRNA_m5C:0.999509242327869 41709 chr17 4859436 4859436 1 + G A UCEC 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCGAATCGATCCAAGCGTGAG < 41bp 1 0.487808036927284 1 0.282024621963501 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859436 synonymous SNV . 0 34 hm5C_associated_SNPs_42659 0 0 1 0 2 nucleus 1 0.500231520317923 1 0.999536959364155 hm5C_site_41709 DeepMRMD:1;iRNA_m5C:0.999536959364155 41710 chr17 4859436 4859436 1 + G A UCEC 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCGAATCGATCCAAGCGTGAGT < 41bp 1 0.372831753743664 1 0.63074791431427 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859436 synonymous SNV . 0 33 hm5C_associated_SNPs_42660 0 0 1 0 2 nucleus 1 0.500231639880558 0.73850417137146 0.999536720238885 hm5C_site_41710 DeepMRMD:0.73850417137146;iRNA_m5C:0.999536720238885 41711 chr1 110466207 110466207 1 + G A UCEC 110466215 + 110466195 110466235 41 CCCCAAGGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGG CCCCAAGGGACAAAGCTTTCCCCCTCCAGGCCAGGAGGGGG < 41bp 1 0.127445585024348 1 0.0682574212551117 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466215 chr1:110466207 nonsynonymous SNV 0.036 0 13 hm5C_associated_SNPs_42661 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41711 DeepMRMD:1;iRNA_m5C:0.999536712157815 41712 chr1 110466207 110466207 1 + G A UCEC 110466216 + 110466196 110466236 41 CCCAAGGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGC CCCAAGGGACAAAGCTTTCCCCCTCCAGGCCAGGAGGGGGC < 41bp 1 0.075930010361396 1 0.0798684060573578 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466216 chr1:110466207 nonsynonymous SNV 0.036 0 12 hm5C_associated_SNPs_42662 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41712 DeepMRMD:1;iRNA_m5C:0.999536712157815 41713 chr1 110466207 110466207 1 + G A UCEC 110466220 + 110466200 110466240 41 AGGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGCAGCA AGGGACAAAGCTTTCCCCCTCCAGGCCAGGAGGGGGCAGCA < 41bp 1 0.285696676974237 1 0.89367949962616 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466220 chr1:110466207 nonsynonymous SNV 0.036 0 8 hm5C_associated_SNPs_42663 0 0 0 0 0 chromatin 1 0.500231643921092 0.21264100074768 0.999536712157815 hm5C_site_41713 DeepMRMD:0.21264100074768;iRNA_m5C:0.999536712157815 41714 chr1 110466207 110466207 1 + G A UCEC 110466221 + 110466201 110466241 41 GGGACAGAGCTTTCCCCCTCCAGGCCAGGAGGGGGCAGCAT GGGACAAAGCTTTCCCCCTCCAGGCCAGGAGGGGGCAGCAT < 41bp 1 0.445554342365306 1 0.934010863304138 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110466221 chr1:110466207 nonsynonymous SNV 0.036 0 7 hm5C_associated_SNPs_42664 0 0 0 0 0 chromatin 1 0.500231643921092 0.131978273391724 0.999536712157815 hm5C_site_41714 DeepMRMD:0.131978273391724;iRNA_m5C:0.999536712157815 41715 chr12 110456154 110456154 1 + C A UCEC 110456173 + 110456153 110456193 41 CCTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATC CATTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATC < 41bp 1 0.36173842984916 1 0.348741590976715 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456173 chr12:110456154 synonymous SNV . 0 2 hm5C_associated_SNPs_42665 0 0 0 0 1 chromatin 1 0.500231236954873 1 0.999537526090254 hm5C_site_41715 DeepMRMD:1;iRNA_m5C:0.999537526090254 41716 chr12 110456154 110456154 1 + C A UCEC 110456174 + 110456154 110456194 41 CTTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATCT ATTGGTTTCTAGAATATGCCCAAATGATGTCTGTCGCATCT < 41bp 1 0.357751411506177 1 0.2260522544384 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110456174 chr12:110456154 synonymous SNV . 0 1 hm5C_associated_SNPs_42666 0 0 0 0 1 chromatin 1 0.50023164392879 1 0.99953671214242 hm5C_site_41716 DeepMRMD:1;iRNA_m5C:0.99953671214242 41717 chr11 65269959 65269959 1 + T C UCEC 65269963 + 65269943 65269983 41 AAACAAGATGTTAAGGTATGCTTCAAAAATTTTGTAAATTG AAACAAGATGTTAAGGCATGCTTCAAAAATTTTGTAAATTG < 41bp 1 0.209422386771783 1 0.257199794054031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269963 chr11:65269959 . . 0 17 hm5C_associated_SNPs_42667 0 0 1 0 0 unknown 1 0.500230661375386 1 0.999538677249227 hm5C_site_41717 DeepMRMD:1;iRNA_m5C:0.999538677249227 41718 chr16 30998265 30998265 1 + G A UCEC 30998260 + 30998240 30998280 41 ACTTCTACCGCCAGGGCCTGCGCCTGGGAGGTTGGCTCTTC ACTTCTACCGCCAGGGCCTGCGCCTAGGAGGTTGGCTCTTC < 41bp 1 0.58684584166219 1 0.258030742406845 experiment 0.82630831667562 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30998260 chr16:30998265 synonymous SNV . 0 26 hm5C_associated_SNPs_42668 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_41718 DeepMRMD:1;iRNA_m5C:0.999536712157815 41719 chr9 4662957 4662957 1 + C T UCEC 4662948 + 4662928 4662968 41 GGGCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGA GGGCTGGTCCGCAGGCGCCGCCCGGCCCATAACCAGATGGA < 41bp 1 0.436332381437777 1 0.702400803565979 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PLPP6 ENSG00000205808 CDS Human protein_coding chr9:4662948 chr9:4662957 synonymous SNV . 0 30 hm5C_associated_SNPs_42669 0 0 0 0 0 Ribosome 1 0.50023164283291 0.595198392868042 0.999536714334181 hm5C_site_41719 DeepMRMD:0.595198392868042;iRNA_m5C:0.999536714334181 41720 chr9 4662957 4662957 1 + C T UCEC 4662949 + 4662929 4662969 41 GGCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGAC GGCTGGTCCGCAGGCGCCGCCCGGCCCATAACCAGATGGAC < 41bp 1 0.29079785825447 1 0.714085340499878 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLPP6 ENSG00000205808 CDS Human protein_coding chr9:4662949 chr9:4662957 synonymous SNV . 0 29 hm5C_associated_SNPs_42670 0 0 0 0 0 Ribosome 1 0.500231643921092 0.571829319000244 0.999536712157815 hm5C_site_41720 DeepMRMD:0.571829319000244;iRNA_m5C:0.999536712157815 41721 chr9 4662957 4662957 1 + C T UCEC 4662950 + 4662930 4662970 41 GCTGGTCCGCAGGCGCCGCCCGGCCCACAACCAGATGGACA GCTGGTCCGCAGGCGCCGCCCGGCCCATAACCAGATGGACA < 41bp 1 0.543586577556719 1 0.23419776558876 experiment 0.912826844886562 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLPP6 ENSG00000205808 CDS Human protein_coding chr9:4662950 chr9:4662957 synonymous SNV . 0 28 hm5C_associated_SNPs_42671 0 0 0 0 0 Ribosome 1 0.500231643921112 1 0.999536712157776 hm5C_site_41721 DeepMRMD:1;iRNA_m5C:0.999536712157776 41722 chr15 57526293 57526293 1 + G T UCEC 57526295 + 57526275 57526315 41 AGGTGATGCACTTGGAAAGGCTTTGGCATCTGTGAGTATTG AGGTGATGCACTTGGAAATGCTTTGGCATCTGTGAGTATTG < 41bp 1 0.140352521885832 1 0.026357889175415 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57526295 chr15:57526293 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_42672 0 0 1 0 2 Cytosol 1 0.500231516267831 1 0.999536967464339 hm5C_site_41722 DeepMRMD:1;iRNA_m5C:0.999536967464339 41723 chr8 145735854 145735854 1 + G A UCEC 145735855 + 145735835 145735875 41 GTGGTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTT GTGGTCTGCTCCATCGCTGACTCCTCCCTGGGTGGGACCTT < 41bp 1 0.280996852039125 1 0.201964527368546 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735855 chr8:145735854 nonsynonymous SNV 0.584 5 20 hm5C_associated_SNPs_42673 0 0 1 0 1 Ribosome 1 0.500231643906374 1 0.999536712187252 hm5C_site_41723 DeepMRMD:1;iRNA_m5C:0.999536712187252 41724 chr8 145735854 145735854 1 + G A UCEC 145735858 + 145735838 145735878 41 GTCTGCTCCATCGCTGGCTCCTCCCTGGGTGGGACCTTGCT GTCTGCTCCATCGCTGACTCCTCCCTGGGTGGGACCTTGCT < 41bp 1 0.223769005511357 1 0.285923540592194 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735858 chr8:145735854 nonsynonymous SNV 0.584 5 17 hm5C_associated_SNPs_42674 0 0 1 0 1 Ribosome 1 0.500231643921049 1 0.999536712157902 hm5C_site_41724 DeepMRMD:1;iRNA_m5C:0.999536712157902 41725 chr8 145150812 145150812 1 + C T UCEC 145150830 + 145150810 145150850 41 GGCAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG GGTAGGGGGTGCGGGGCTGGCCATGGCTCTGCATTCGGCTG < 41bp 1 0.569554340769518 1 0.468362718820572 experiment 0.860891318460963 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYC1 ENSG00000179091 CDS Human protein_coding chr8:145150830 chr8:145150812 nonsynonymous SNV 0.983 1 3 hm5C_associated_SNPs_42675 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41725 DeepMRMD:1;iRNA_m5C:0.999536712157815 41726 chr7 106768717 106768717 1 + C T UCEC 106768707 + 106768687 106768727 41 AATAGGTTGCAAGAGGCTTGCAAAGACATCCTGCTGTTTAA AATAGGTTGCAAGAGGCTTGCAAAGACATCTTGCTGTTTAA < 41bp 1 0.441552884877782 1 0.529642581939697 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106768707 chr7:106768717 synonymous SNV . 0 31 hm5C_associated_SNPs_42676 0 0 1 0 2 Ribosome 1 0.50023164392022 0.940714836120606 0.99953671215956 hm5C_site_41726 DeepMRMD:0.940714836120606;iRNA_m5C:0.99953671215956 41727 chr1 223943216 223943216 1 + G T UCEC 223943200 + 223943180 223943220 41 AGACACATTCTGGATGAACCCTCAGTACCTGATCAAGCTGG AGACACATTCTGGATGAACCCTCAGTACCTGATCAATCTGG < 41bp 1 0.624191786778362 1 0.417696118354797 experiment 0.751616426443276 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943200 chr1:223943216 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_42677 0 0 1 0 1 Ribosome 1 0.500231643923116 1 0.999536712153768 hm5C_site_41727 DeepMRMD:1;iRNA_m5C:0.999536712153768 41728 chr1 223943216 223943216 1 + G T UCEC 223943207 + 223943187 223943227 41 TTCTGGATGAACCCTCAGTACCTGATCAAGCTGGAGGAGGA TTCTGGATGAACCCTCAGTACCTGATCAATCTGGAGGAGGA < 41bp 1 0.363602501205921 1 0.0291604697704315 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943207 chr1:223943216 nonsynonymous SNV 1.000 2 30 hm5C_associated_SNPs_42678 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_41728 DeepMRMD:1;iRNA_m5C:0.999536712157816 41729 chr5 71648504 71648504 1 + C T UCEC 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACTTGATAAAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.453778085251046 1 0.641235888004303 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648504 synonymous SNV . 0 9 hm5C_associated_SNPs_42679 0 0 1 0 2 chromatin 1 0.500220981015681 0.717528223991394 0.999558037968638 hm5C_site_41729 DeepMRMD:0.717528223991394;iRNA_m5C:0.999558037968638 41730 chr1 10239573 10239573 1 + C T UCEC 10239562 + 10239542 10239582 41 ATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCCCTT ATCATCCTGCGGCACCTGCTCAACTCCCCCATGGACCCCTT < 41bp 1 0.486782551616694 1 0.634780168533325 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10239562 chr1:10239573 nonsynonymous SNV 0.995 4 32 hm5C_associated_SNPs_42680 0 0 1 0 2 Cytosol 1 0.500231643921092 0.73043966293335 0.999536712157815 hm5C_site_41730 DeepMRMD:0.73043966293335;iRNA_m5C:0.999536712157815 41731 chr7 150707857 150707857 1 + T C UCEC 150707858 + 150707838 150707878 41 AGCACCCACCCAGGAGAGATCCACCTCACTGTAGCTGTGCT AGCACCCACCCAGGAGAGACCCACCTCACTGTAGCTGTGCT < 41bp 1 0.0483414822110027 1 0.164332538843155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOS3 ENSG00000164867 CDS Human protein_coding chr7:150707858 chr7:150707857 nonsynonymous SNV 0.987 3 20 hm5C_associated_SNPs_42681 0 0 0 0 0 chromatin 1 0.500231643921121 1 0.999536712157759 hm5C_site_41731 DeepMRMD:1;iRNA_m5C:0.999536712157759 41732 chr15 41192199 41192199 1 + G A UCEC 41192201 + 41192181 41192221 41 TACCACGTGCAACGGGAGGCCCGAGATGTCTGGCGCACCTA TACCACGTGCAACGGGAGACCCGAGATGTCTGGCGCACCTA < 41bp 1 0.409093398508628 1 0.49744063615799 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192201 chr15:41192199 nonsynonymous SNV 0.996 0 19 hm5C_associated_SNPs_42682 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41732 DeepMRMD:1;iRNA_m5C:0.999536712157815 41733 chr11 93412659 93412659 1 + C T UCEC 93412674 + 93412654 93412694 41 TGGAACGGTTTGAAAAGGCACATGTACGGGGATTCCAAGCA TGGAATGGTTTGAAAAGGCACATGTACGGGGATTCCAAGCA < 41bp 1 0.202584432392026 1 0.0708856880664825 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP295 ENSG00000166004 CDS Human protein_coding chr11:93412674 chr11:93412659 nonsynonymous SNV 0.983 2 6 hm5C_associated_SNPs_42683 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41733 DeepMRMD:1;iRNA_m5C:0.999536712157815 41734 chr19 54649743 54649743 1 + C T UCEC 54649752 + 54649732 54649772 41 ACCACCTCCAGCTCTCCCATCCCGCCCAGCCCAGCCAACTG ACCACCTCCAGTTCTCCCATCCCGCCCAGCCCAGCCAACTG < 41bp 1 0.192379898782454 1 0.414322346448898 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54649752 chr19:54649743 synonymous SNV . 0 12 hm5C_associated_SNPs_42684 0 0 1 1 2 Ribosome 1 0.500234504314455 1 0.999530991371089 hm5C_site_41734 DeepMRMD:1;iRNA_m5C:0.999530991371089 41735 chr1 45793566 45793566 1 + C T UCEC 45793580 + 45793560 45793600 41 TCCTGGCCCGGCACAAGGGGCCAGGCCTGCAGCACGTGGGG TCCTGGTCCGGCACAAGGGGCCAGGCCTGCAGCACGTGGGG < 41bp 1 0.233868121072911 1 0.333053350448608 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HPDL ENSG00000186603 CDS Human protein_coding chr1:45793580 chr1:45793566 nonsynonymous SNV 0.413 0 7 hm5C_associated_SNPs_42685 0 0 0 0 0 exosome 1 0.500231643921125 1 0.999536712157751 hm5C_site_41735 DeepMRMD:1;iRNA_m5C:0.999536712157751 41736 chr1 45793566 45793566 1 + C T UCEC 45793581 + 45793561 45793601 41 CCTGGCCCGGCACAAGGGGCCAGGCCTGCAGCACGTGGGGC CCTGGTCCGGCACAAGGGGCCAGGCCTGCAGCACGTGGGGC < 41bp 1 0.520167118914501 1 0.724225521087646 experiment 0.959665762170998 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HPDL ENSG00000186603 CDS Human protein_coding chr1:45793581 chr1:45793566 nonsynonymous SNV 0.413 0 6 hm5C_associated_SNPs_42686 0 0 0 0 0 exosome 1 0.500231643921141 0.551548957824708 0.999536712157719 hm5C_site_41736 DeepMRMD:0.551548957824708;iRNA_m5C:0.999536712157719 41737 chr6 32944236 32944236 1 + G A UCEC 32944227 + 32944207 32944247 41 TTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAGGTATGA TTACTGCAGCTCCTCCAGCCCAGCCCCTTACCAAGGTATGA < 41bp 1 0.297550665119566 1 0.152070939540863 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32944227 chr6:32944236 nonsynonymous SNV 1.000 0 30 hm5C_associated_SNPs_42687 0 0 1 0 1 Cytosol 1 0.500231643779555 1 0.999536712440891 hm5C_site_41737 DeepMRMD:1;iRNA_m5C:0.999536712440891 41738 chr12 98995270 98995270 1 + A G UCEC 98995269 + 98995249 98995289 41 CCCTCCTCCACCCGAGATGCCAGAGTCTCTGAAGAAGAAGC CCCTCCTCCACCCGAGATGCCGGAGTCTCTGAAGAAGAAGC < 41bp 1 0.613111201118143 1 0.465520888566971 experiment 0.773777597763714 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98995269 chr12:98995270 synonymous SNV . 0 22 hm5C_associated_SNPs_42690 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41738 DeepMRMD:1;iRNA_m5C:0.999536712157815 41739 chr16 2816049 2816049 1 + C T UCEC 2816031 + 2816011 2816051 41 CAGGAAAGTTCCCGGACCTCCTCTCGACGCCGAAGAGGCCG CAGGAAAGTTCCCGGACCTCCTCTCGACGCCGAAGAGGTCG < 41bp 1 0.116903981534268 1 0.30153352022171 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816031 chr16:2816049 synonymous SNV . 0 39 hm5C_associated_SNPs_42691 0 0 1 0 0 Nucleus 1 0.500231647850161 1 0.999536704299678 hm5C_site_41739 DeepMRMD:1;iRNA_m5C:0.999536704299678 41740 chr16 2816049 2816049 1 + C T UCEC 2816050 + 2816030 2816070 41 CCTCTCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACC CCTCTCGACGCCGAAGAGGTCGCTCTCGGACACCCCCAACC < 41bp 1 0.22700524723557 1 0.105241149663925 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816050 chr16:2816049 synonymous SNV . 0 20 hm5C_associated_SNPs_42692 0 0 1 0 0 Nucleus 1 0.500231612697588 1 0.999536774604825 hm5C_site_41740 DeepMRMD:1;iRNA_m5C:0.999536774604825 41741 chr16 2816049 2816049 1 + C T UCEC 2816052 + 2816032 2816072 41 TCTCGACGCCGAAGAGGCCGCTCTCGGACACCCCCAACCAG TCTCGACGCCGAAGAGGTCGCTCTCGGACACCCCCAACCAG < 41bp 1 0.269001123112645 1 0.159784346818924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2816052 chr16:2816049 synonymous SNV . 0 18 hm5C_associated_SNPs_42693 0 0 1 0 0 Nucleus 1 0.50023164370729 1 0.999536712585419 hm5C_site_41741 DeepMRMD:1;iRNA_m5C:0.999536712585419 41742 chr6 44219189 44219189 1 + G A UCEC 44219187 + 44219167 44219207 41 GTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCCCGA GTGTGGTTGACTCTGAGGATCTACCCCTGAACATCTCCCGA < 41bp 1 0.254944090178983 1 0.0876008570194244 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219187 chr6:44219189 synonymous SNV . 0 23 hm5C_associated_SNPs_42694 0 0 1 0 1 Nucleus 1 0.500231643921082 1 0.999536712157836 hm5C_site_41742 DeepMRMD:1;iRNA_m5C:0.999536712157836 41743 chr19 12902703 12902703 1 + G A UCEC 12902712 + 12902692 12902732 41 AACCGAGCCTGGCGGTCAACCTGGCCGACCCCTACCGGAGT AACCGAGCCTGACGGTCAACCTGGCCGACCCCTACCGGAGT < 41bp 1 0.564617020930882 1 0.596655488014221 experiment 0.870765958138235 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control JUNB ENSG00000171223 CDS Human protein_coding chr19:12902712 chr19:12902703 nonsynonymous SNV 0.998 0 12 hm5C_associated_SNPs_42695 0 0 1 0 0 Cytosol 1 0.50023163971555 0.806689023971558 0.9995367205689 hm5C_site_41743 DeepMRMD:0.806689023971558;iRNA_m5C:0.9995367205689 41744 chr11 93412692 93412692 1 + G A UCEC 93412674 + 93412654 93412694 41 TGGAACGGTTTGAAAAGGCACATGTACGGGGATTCCAAGCA TGGAACGGTTTGAAAAGGCACATGTACGGGGATTCCAAACA < 41bp 1 0.181918148362586 1 0.0500983893871307 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEP295 ENSG00000166004 CDS Human protein_coding chr11:93412674 chr11:93412692 nonsynonymous SNV 0.994 4 39 hm5C_associated_SNPs_42696 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_41744 DeepMRMD:1;iRNA_m5C:0.999536712157816 41745 chr19 48259045 48259045 1 + G A UCEC 48259063 + 48259043 48259083 41 GAGCTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC GAACTCGGAGCTGACAGACTCGCTCAGGACCCTGAAGGTGC < 41bp 1 0.243579163925808 1 0.0310888588428497 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259063 chr19:48259045 nonsynonymous SNV 0.905 4 3 hm5C_associated_SNPs_42697 0 0 1 0 2 unknown 1 0.500231643865637 1 0.999536712268726 hm5C_site_41745 DeepMRMD:1;iRNA_m5C:0.999536712268726 41746 chr11 65156920 65156920 1 + C A UCEC 65156938 + 65156918 65156958 41 CACCGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC CAACGCGCTGTCCGCGAGGTCCTGCAGCTTCCAGACATCGC < 41bp 1 0.0678741992937523 1 0.115534752607346 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65156938 chr11:65156920 nonsynonymous SNV 0.992 4 3 hm5C_associated_SNPs_42698 0 0 0 0 2 Ribosome 1 0.500231810482049 1 0.999536379035902 hm5C_site_41746 DeepMRMD:1;iRNA_m5C:0.999536379035902 41747 chr6 31516054 31516054 1 + G T UCEC 31516048 + 31516028 31516068 41 CCCAGGCCCTCCTCCAGCGACACCCAGGCCTCGATGTAGAT CCCAGGCCCTCCTCCAGCGACACCCATGCCTCGATGTAGAT < 41bp 1 0.337811034865726 1 0.0393623113632202 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFKBIL1 ENSG00000204498;ENSG00000213760 CDS Human other chr6:31516048 chr6:31516054 nonsynonymous SNV 0.998 3 27 hm5C_associated_SNPs_42699 0 0 1 0 0 cytosol 1 0.500226848627878 1 0.999546302744244 hm5C_site_41747 DeepMRMD:1;iRNA_m5C:0.999546302744244 41748 chr22 42301553 42301553 1 + G A UCEC 42301538 + 42301518 42301558 41 TCCTTCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGC TCCTTCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTACTGGC < 41bp 1 0.181230797302421 1 0.272884905338287 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42301538 chr22:42301553 synonymous SNV . 0 36 hm5C_associated_SNPs_42700 0 0 1 0 0 Ribosome 1 0.50023164392143 1 0.99953671215714 hm5C_site_41748 DeepMRMD:1;iRNA_m5C:0.99953671215714 41749 chr22 42301553 42301553 1 + G A UCEC 42301539 + 42301519 42301559 41 CCTTCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGCC CCTTCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTACTGGCC < 41bp 1 0.533951149395273 1 0.626239717006683 experiment 0.932097701209454 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42301539 chr22:42301553 synonymous SNV . 0 35 hm5C_associated_SNPs_42701 0 0 1 0 0 Ribosome 1 0.500231643921092 0.747520565986634 0.999536712157815 hm5C_site_41749 DeepMRMD:0.747520565986634;iRNA_m5C:0.999536712157815 41750 chr22 42301553 42301553 1 + G A UCEC 42301542 + 42301522 42301562 41 TCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGCCGAA TCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTACTGGCCGAA < 41bp 1 0.656826329061327 1 0.800466060638428 experiment 0.686347341877346 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42301542 chr22:42301553 synonymous SNV . 0 32 hm5C_associated_SNPs_42702 0 0 1 0 0 Ribosome 1 0.500231643921092 0.399067878723144 0.999536712157815 hm5C_site_41750 DeepMRMD:0.399067878723144;iRNA_m5C:0.999536712157815 41751 chr12 65264471 65264471 1 + G A UCEC 65264472 + 65264452 65264492 41 TCGAAGTGAATACCATGCAGCTTTTAACAGTATGATGATGG TCGAAGTGAATACCATGCAACTTTTAACAGTATGATGATGG < 41bp 1 0.0194755405094453 1 0.0230828821659088 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65264472 chr12:65264471 nonsynonymous SNV 0.542 2 20 hm5C_associated_SNPs_42703 0 0 0 0 1 nucleoplasm 1 0.500231633597203 1 0.999536732805594 hm5C_site_41751 DeepMRMD:1;iRNA_m5C:0.999536732805594 41752 chr19 18543843 18543843 1 + G A UCEC 18543840 + 18543820 18543860 41 GAACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTG GAACCCCATCGGGCAGGGCGCCGACAGGGCTAATGTGAGTG < 41bp 1 0.0646960333534908 1 0.113160818815231 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543840 chr19:18543843 nonsynonymous SNV 0.760 0 24 hm5C_associated_SNPs_42705 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_41752 DeepMRMD:1;iRNA_m5C:0.999536712157813 41753 chr19 18543843 18543843 1 + G A UCEC 18543841 + 18543821 18543861 41 AACCCCATCGGGCAGGGCGCCGGCAGGGCTAATGTGAGTGG AACCCCATCGGGCAGGGCGCCGACAGGGCTAATGTGAGTGG < 41bp 1 0.542660118254472 1 0.4344202876091 experiment 0.914679763491056 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18543841 chr19:18543843 nonsynonymous SNV 0.760 0 23 hm5C_associated_SNPs_42706 0 0 1 0 2 Ribosome 1 0.500232036577726 1 0.999535926844549 hm5C_site_41753 DeepMRMD:1;iRNA_m5C:0.999535926844549 41754 chr7 98497059 98497059 1 + G A UCEC 98497067 + 98497047 98497087 41 TTCCATCATTCCGAGGGGATCACTTTCTCTGAAAGTGTTGG TTCCATCATTCCAAGGGGATCACTTTCTCTGAAAGTGTTGG < 41bp 1 0.0239924846430289 1 0.121159315109253 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98497067 chr7:98497059 synonymous SNV . 0 13 hm5C_associated_SNPs_42707 0 0 1 0 2 Nucleus 1 0.500231643921014 1 0.999536712157972 hm5C_site_41754 DeepMRMD:1;iRNA_m5C:0.999536712157972 41755 chr1 114514526 114514526 1 + C T UCEC 114514546 + 114514526 114514566 41 CGAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA TGAGCTCAACGCGGGGGGACCAGTGCAGCACAACCACTCAA < 41bp 1 0.564483461276261 1 0.669021368026733 experiment 0.871033077447479 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114514546 chr1:114514526 stopgain 0.920 1 1 hm5C_associated_SNPs_42708 0 0 1 0 2 Cytosol 1 0.500231643921092 0.661957263946534 0.999536712157815 hm5C_site_41755 DeepMRMD:0.661957263946534;iRNA_m5C:0.999536712157815 41756 chr3 62189595 62189595 1 + A G UCEC 62189585 + 62189565 62189605 41 AGCCTATGTCCCGCGGGGACCGATTTTCTGAAGACAGCAGA AGCCTATGTCCCGCGGGGACCGATTTTCTGGAGACAGCAGA < 41bp 1 0.0993635705414233 1 0.0875984728336334 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189585 chr3:62189595 nonsynonymous SNV 0.996 1 31 hm5C_associated_SNPs_42709 0 0 0 0 1 Ribosome 1 0.500231643920996 1 0.999536712158009 hm5C_site_41756 DeepMRMD:1;iRNA_m5C:0.999536712158009 41757 chr15 42105230 42105230 1 + C T UCEC 42105224 + 42105204 42105244 41 GGAAAAAAGGCGGACAGTACCTTCTGCATCACGTCCTCAGG GGAAAAAAGGCGGACAGTACCTTCTGTATCACGTCCTCAGG < 41bp 1 0.343948114877103 1 0.104921400547028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42105224 chr15:42105230 synonymous SNV . 0 27 hm5C_associated_SNPs_42710 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643994921 1 0.999536712010157 hm5C_site_41757 DeepMRMD:1;iRNA_m5C:0.999536712010157 41758 chr18 55996262 55996262 1 + A G UCEC 55996248 + 55996228 55996268 41 GACGTGTCCTCGGAGTCGGACAATAACATCAGACAGATCAA GACGTGTCCTCGGAGTCGGACAATAACATCAGACGGATCAA < 41bp 1 0.312304421160516 1 0.222743958234787 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:55996248 chr18:55996262 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_42711 0 0 1 0 2 Cytosol 1 0.500231651972176 1 0.999536696055649 hm5C_site_41758 DeepMRMD:1;iRNA_m5C:0.999536696055649 41759 chr6 31525821 31525821 1 + G A UCEC 31525833 + 31525813 31525853 41 GAAACCCAGGAACCTGAGTCCTTCTCAGCCTGGTCAGATCG GAAACCCAAGAACCTGAGTCCTTCTCAGCCTGGTCAGATCG < 41bp 1 0.217517893726319 1 0.110365301370621 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFKBIL1 ENSG00000204498 CDS Human protein_coding chr6:31525833 chr6:31525821 synonymous SNV . 0 9 hm5C_associated_SNPs_42712 0 0 0 1 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41759 DeepMRMD:1;iRNA_m5C:0.999536712157815 Multiple continuous traits in DGI samples 41760 chr7 102109433 102109433 1 + C T UCEC 102109445 + 102109425 102109465 41 GGCTTCTGCTGCGGGGTCATCCGAGCCCACAAGAAGGCCAT GGCTTCTGTTGCGGGGTCATCCGAGCCCACAAGAAGGCCAT < 41bp 1 0.414610373426263 1 0.74229884147644 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102109445 chr7:102109433 synonymous SNV . 0 9 hm5C_associated_SNPs_42713 0 0 1 0 1 Ribosome 1 0.500231643944876 0.51540231704712 0.999536712110248 hm5C_site_41760 DeepMRMD:0.51540231704712;iRNA_m5C:0.999536712110248 41761 chr22 39125550 39125550 1 + G A UCEC 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTCGACGAAAAAGGGCCCCCTGACAAAACGAGACGA < 41bp 1 0.0480708937720875 1 0.144877433776855 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125550 synonymous SNV . 0 30 hm5C_associated_SNPs_42714 0 0 0 0 1 Ribosome 1 0.500231643921042 1 0.999536712157916 hm5C_site_41761 DeepMRMD:1;iRNA_m5C:0.999536712157916 41762 chr22 39125550 39125550 1 + G A UCEC 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTCGACGAAAAAGGGCCCCCTGACAAAACGAGACGAG < 41bp 1 0.0523657959470683 1 0.254397422075272 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125550 synonymous SNV . 0 29 hm5C_associated_SNPs_42715 0 0 0 0 1 Ribosome 1 0.50023164392135 1 0.9995367121573 hm5C_site_41762 DeepMRMD:1;iRNA_m5C:0.9995367121573 41763 chr22 39125550 39125550 1 + G A UCEC 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTCGACGAAAAAGGGCCCCCTGACAAAACGAGACGAGG < 41bp 1 0.0238458271963889 1 0.194403052330017 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125550 synonymous SNV . 0 28 hm5C_associated_SNPs_42716 0 0 0 0 1 Ribosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_41763 DeepMRMD:1;iRNA_m5C:0.999536712157806 41764 chr22 39125550 39125550 1 + G A UCEC 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTCGACGAAAAAGGGCCCCCTGACAAAACGAGACGAGGG < 41bp 1 0.0850710215543296 1 0.193061172962189 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125550 synonymous SNV . 0 27 hm5C_associated_SNPs_42717 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41764 DeepMRMD:1;iRNA_m5C:0.999536712157815 41765 chr22 39125550 39125550 1 + G A UCEC 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTCGACGAAAAAGGGCCCCCTGACAAAACGAGACGAGGGG < 41bp 1 0.122268157071606 1 0.366479635238647 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125550 synonymous SNV . 0 26 hm5C_associated_SNPs_42718 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41765 DeepMRMD:1;iRNA_m5C:0.999536712157815 41766 chr22 39125550 39125550 1 + G A UCEC 39125568 + 39125548 39125588 41 ACGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT ACAAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGT < 41bp 1 0.135694392468229 1 0.183102965354919 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125568 chr22:39125550 synonymous SNV . 0 3 hm5C_associated_SNPs_42719 0 0 0 0 1 Ribosome 1 0.50023164392112 1 0.99953671215776 hm5C_site_41766 DeepMRMD:1;iRNA_m5C:0.99953671215776 41767 chr22 39125550 39125550 1 + G A UCEC 39125569 + 39125549 39125589 41 CGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA CAAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTA < 41bp 1 0.0359151971388896 1 0.437037110328674 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125569 chr22:39125550 synonymous SNV . 0 2 hm5C_associated_SNPs_42720 0 0 0 0 1 Ribosome 1 0.500231643912426 1 0.999536712175148 hm5C_site_41767 DeepMRMD:1;iRNA_m5C:0.999536712175148 41768 chr22 39125550 39125550 1 + G A UCEC 39125570 + 39125550 39125590 41 GAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAG AAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAG < 41bp 1 0.156044415253989 1 0.320160508155823 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125570 chr22:39125550 synonymous SNV . 0 1 hm5C_associated_SNPs_42721 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41768 DeepMRMD:1;iRNA_m5C:0.999536712157815 41769 chr2 38908574 38908574 1 + T C UCEC 38908580 + 38908560 38908600 41 AGAGCACAAGCCAGTCAGGCCACACCAGTCAACCTGACCAA AGAGCACAAGCCAGCCAGGCCACACCAGTCAACCTGACCAA < 41bp 1 0.256277042715408 1 0.205931067466736 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALM ENSG00000143891 CDS Human protein_coding chr2:38908580 chr2:38908574 synonymous SNV . 0 15 hm5C_associated_SNPs_42722 0 0 1 0 1 Ribosome 1 0.500231643921895 1 0.999536712156209 hm5C_site_41769 DeepMRMD:1;iRNA_m5C:0.999536712156209 41770 chr12 989995 989995 1 + C T UCEC 989989 + 989969 990009 41 ATTCTACAGTCCTATCCCCTCCCATGCCGACAGAAGTACTG ATTCTACAGTCCTATCCCCTCCCATGTCGACAGAAGTACTG < 41bp 1 0.153798211031764 1 0.129124015569687 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WNK1 ENSG00000060237 CDS Human protein_coding chr12:989989 chr12:989995 nonsynonymous SNV 0.997 1 27 hm5C_associated_SNPs_42723 0 0 1 0 0 Ribosome 1 0.500231643102169 1 0.999536713795662 hm5C_site_41770 DeepMRMD:1;iRNA_m5C:0.999536713795662 41771 chr18 77802139 77802139 1 + C A UCEC 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT ATTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT < 41bp 1 0.534809326457109 1 0.181409507989883 experiment 0.930381347085782 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802139 nonsynonymous SNV 0.957 0 1 hm5C_associated_SNPs_42724 0 0 1 0 2 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_41771 DeepMRMD:1;iRNA_m5C:0.999536712157818 41772 chr1 3329168 3329168 1 + C T UCEC 3329165 + 3329145 3329185 41 CCGCATCCGGCGAGGAGCAGCCGCTGGACCTGAGCATCGGC CCGCATCCGGCGAGGAGCAGCCGTTGGACCTGAGCATCGGC < 41bp 1 0.118510598970539 1 0.180769115686417 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3329165 chr1:3329168 synonymous SNV . 0 24 hm5C_associated_SNPs_42725 0 0 0 0 0 Nucleus 1 0.50023164393521 1 0.99953671212958 hm5C_site_41772 DeepMRMD:1;iRNA_m5C:0.99953671212958 41773 chr17 37360389 37360389 1 + T C UCEC 37360369 + 37360349 37360389 41 AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCAT AAGGTGAAGGGGAATGTGTTCAAAAACAAGCGGATTCTCAC < 41bp 1 0.68788862015468 1 0.679356098175049 experiment 0.624222759690639 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360369 chr17:37360389 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_42726 0 0 1 0 2 chromatin 1 0.500231643921092 0.641287803649902 0.999536712157815 hm5C_site_41773 DeepMRMD:0.641287803649902;iRNA_m5C:0.999536712157815 41774 chr17 45656843 45656843 1 + G T UCEC 45656840 + 45656820 45656860 41 AAGTAAATATACTACCCCTTCTGGAGAGGTGCGCTATGCTG AAGTAAATATACTACCCCTTCTGTAGAGGTGCGCTATGCTG < 41bp 1 0.556929844043945 1 0.444603621959686 experiment 0.886140311912111 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45656840 chr17:45656843 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_42727 0 0 1 0 2 Nucleus 1 0.500231643920798 1 0.999536712158405 hm5C_site_41774 DeepMRMD:1;iRNA_m5C:0.999536712158405 41775 chr11 64128969 64128969 1 + C T UCEC 64128952 + 64128932 64128972 41 CCCTCCCAGAAAGAGCGGACCTTCTCCTTCTGTGGCACCAT CCCTCCCAGAAAGAGCGGACCTTCTCCTTCTGTGGCATCAT < 41bp 1 0.0413329899989519 1 0.0518414974212646 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128952 chr11:64128969 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_42729 0 0 1 0 2 chromatin 1 0.500231643921143 1 0.999536712157714 hm5C_site_41775 DeepMRMD:1;iRNA_m5C:0.999536712157714 41776 chr3 100467130 100467130 1 + C A UCEC 100467138 + 100467118 100467158 41 CCACAGCAGTACCAGGCGAGCAATTATCCTGCACAAACTTA CCACAGCAGTACAAGGCGAGCAATTATCCTGCACAAACTTA < 41bp 1 0.155570192358537 1 0.215494364500046 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TFG ENSG00000114354 CDS Human protein_coding chr3:100467138 chr3:100467130 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_42730 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41776 DeepMRMD:1;iRNA_m5C:0.999536712157815 41777 chr7 12269412 12269412 1 + C T UCEC 12269401 + 12269381 12269421 41 AAACAGTTATTGGAAAGGCACGCTTAAACAACATAACCATT AAACAGTTATTGGAAAGGCACGCTTAAACAATATAACCATT < 41bp 1 0.230575748458995 1 0.0583687126636505 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM106B ENSG00000106460 CDS Human protein_coding chr7:12269401 chr7:12269412 synonymous SNV . 0 32 hm5C_associated_SNPs_42732 0 0 1 0 1 Ribosome 1 0.500231677039453 1 0.999536645921095 hm5C_site_41777 DeepMRMD:1;iRNA_m5C:0.999536645921095 41778 chrX 48457774 48457774 1 + C T UCEC 48457763 + 48457743 48457783 41 CTTTGAGGATGATCCTCGGGCCCTGGGGGCCCGTGGGCACC CTTTGAGGATGATCCTCGGGCCCTGGGGGCCTGTGGGCACC < 41bp 1 0.183999760216503 1 0.0892339944839478 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457763 chrX:48457774 nonsynonymous SNV 0.997 2 32 hm5C_associated_SNPs_42734 0 0 1 0 1 Ribosome 1 0.500231603122113 1 0.999536793755775 hm5C_site_41778 DeepMRMD:1;iRNA_m5C:0.999536793755775 41779 chrX 48457774 48457774 1 + C T UCEC 48457772 + 48457752 48457792 41 TGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTG TGATCCTCGGGCCCTGGGGGCCTGTGGGCACCGTCGTTCTG < 41bp 1 0.136239091187303 1 0.053396999835968 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457772 chrX:48457774 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_42735 0 0 1 0 1 Ribosome 1 0.500231490795491 1 0.999537018409019 hm5C_site_41779 DeepMRMD:1;iRNA_m5C:0.999537018409019 41780 chrX 48457774 48457774 1 + C T UCEC 48457773 + 48457753 48457793 41 GATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGT GATCCTCGGGCCCTGGGGGCCTGTGGGCACCGTCGTTCTGT < 41bp 1 0.54012690473272 1 0.385330080986023 experiment 0.919746190534561 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457773 chrX:48457774 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_42736 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41780 DeepMRMD:1;iRNA_m5C:0.999536712157815 41781 chr1 228470956 228470956 1 + C T UCEC 228470936 + 228470916 228470956 41 CTCAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC CTCAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTT < 41bp 1 0.191291060607962 1 0.369783937931061 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228470936 chr1:228470956 nonsynonymous SNV 0.022 2 41 hm5C_associated_SNPs_42737 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41781 DeepMRMD:1;iRNA_m5C:0.999536712157815 41782 chr14 24779943 24779943 1 + G A UCEC 24779945 + 24779925 24779965 41 TCGCGGGCCACAGGCACAGCCTTCCTGCTGCTGGCGGCGCT TCGCGGGCCACAGGCACAACCTTCCTGCTGCTGGCGGCGCT < 41bp 1 0.238517310686816 1 0.44155615568161 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTB4R2 ENSG00000213906;ENSG00000272658 CDS Human other chr14:24779945 chr14:24779943 nonsynonymous SNV 0.511 0 19 hm5C_associated_SNPs_42738 0 0 1 0 1 chromatin 1 0.500231643914706 1 0.999536712170588 hm5C_site_41782 DeepMRMD:1;iRNA_m5C:0.999536712170588 41783 chr4 6642847 6642847 1 + C T UCEC 6642867 + 6642847 6642887 41 CGACGCGGCCGAGGGCCGGGCGGCCAAGAGGTGCGAGAAGG TGACGCGGCCGAGGGCCGGGCGGCCAAGAGGTGCGAGAAGG < 41bp 1 0.614604911978707 1 0.526133835315704 experiment 0.770790176042585 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MRFAP1 ENSG00000179010 CDS Human protein_coding chr4:6642867 chr4:6642847 synonymous SNV . 0 1 hm5C_associated_SNPs_42740 0 0 1 0 0 Ribosome 1 0.500231643921092 0.947732329368592 0.999536712157815 hm5C_site_41783 DeepMRMD:0.947732329368592;iRNA_m5C:0.999536712157815 41784 chrX 148628333 148628333 1 + C T UCEC 148628325 + 148628305 148628345 41 ACTTTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT ACTTTGCAATGCCCCGAAGACTTAACTCTCGATGAGGTTGT < 41bp 1 0.372600671568204 1 0.0826967358589172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXorf40A ENSG00000197620 CDS Human protein_coding chrX:148628325 chrX:148628333 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_42741 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41784 DeepMRMD:1;iRNA_m5C:0.999536712157815 41785 chr11 33564283 33564283 1 + G A UCEC 33564290 + 33564270 33564310 41 GCAGATCAAAGCTGGGGTGCCTGGAAGAGTGCACAATGGGG GCAGATCAAAGCTAGGGTGCCTGGAAGAGTGCACAATGGGG < 41bp 1 0.637633750959591 1 0.439821481704712 experiment 0.724732498080817 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33564290 chr11:33564283 nonsynonymous SNV 0.000 0 14 hm5C_associated_SNPs_42742 0 0 1 0 0 exosome 1 0.500231656507237 1 0.999536686985526 hm5C_site_41785 DeepMRMD:1;iRNA_m5C:0.999536686985526 41786 chr1 9670745 9670745 1 + G T UCEC 9670727 + 9670707 9670747 41 GGACAGAAGCTGCTGCTGTTCCCGTCACCCCCTGGAGAGGC GGACAGAAGCTGCTGCTGTTCCCGTCACCCCCTGGAGATGC < 41bp 1 0.434319927046824 1 0.0790221393108368 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9670727 chr1:9670745 nonsynonymous SNV 0.017 1 39 hm5C_associated_SNPs_42743 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41786 DeepMRMD:1;iRNA_m5C:0.999536712157815 41787 chr8 92090667 92090667 1 + G T UCEC 92090658 + 92090638 92090678 41 ATTGAAAACTTAACAGGAGCCAGACATATGGAAAGTGAGAA ATTGAAAACTTAACAGGAGCCAGACATATTGAAAGTGAGAA < 41bp 1 0.451240989924349 1 0.29829066991806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92090658 chr8:92090667 nonsynonymous SNV 0.771 0 30 hm5C_associated_SNPs_42744 0 0 1 0 1 Ribosome 1 0.500219395311873 1 0.999561209376255 hm5C_site_41787 DeepMRMD:1;iRNA_m5C:0.999561209376255 41788 chr9 78506250 78506250 1 + C T UCEC 78506235 + 78506215 78506255 41 GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAACCGTAT GCAGTCAAAATCGCCGGGGGCTTCCCGGAGGCCAATCGTAT < 41bp 1 0.0420873929029517 1 0.0275035798549652 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78506235 chr9:78506250 synonymous SNV . 0 36 hm5C_associated_SNPs_42745 0 0 0 1 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41788 DeepMRMD:1;iRNA_m5C:0.999536712157815 41789 chr17 27064862 27064862 1 + A G UCEC 27064861 + 27064841 27064881 41 CCCCCGGGGACCTGTGAGGCCAGCCATCCCACCACCACTGT CCCCCGGGGACCTGTGAGGCCGGCCATCCCACCACCACTGT < 41bp 1 0.452130424665171 1 0.145168662071228 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064861 chr17:27064862 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_42746 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41789 DeepMRMD:1;iRNA_m5C:0.999536712157815 41790 chr12 53433441 53433441 1 + C T UCEC 53433438 + 53433418 53433458 41 GATGGCAAAAAGGATCAAGACTCCAGATCTGCACCTGAGCC GATGGCAAAAAGGATCAAGACTCTAGATCTGCACCTGAGCC < 41bp 1 0.624085809236294 1 0.76581859588623 experiment 0.751828381527411 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433438 chr12:53433441 synonymous SNV . 0 24 hm5C_associated_SNPs_42747 0 0 0 0 2 Cytosol 1 0.500231643921092 0.46836280822754 0.999536712157815 hm5C_site_41790 DeepMRMD:0.46836280822754;iRNA_m5C:0.999536712157815 41791 chr8 28906492 28906492 1 + A G UCEC 28906477 + 28906457 28906497 41 TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGA TGCTTTTTTCGAAGAAGCAGCAATCCTGGAGAGTCGTGGGA < 41bp 1 0.043075663678899 1 0.133563250303268 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906477 chr8:28906492 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_42749 0 0 1 0 4 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41791 DeepMRMD:1;iRNA_m5C:0.999536712157815 41792 chr8 28906492 28906492 1 + A G UCEC 28906481 + 28906461 28906501 41 TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCATGGGATAGA TTTTTCGAAGAAGCAGCAATCCTGGAGAGTCGTGGGATAGA < 41bp 1 0.248350022873758 1 0.752850532531738 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906481 chr8:28906492 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_42750 0 0 1 0 4 Nucleus 1 0.500231643921094 0.494298934936524 0.999536712157813 hm5C_site_41792 DeepMRMD:0.494298934936524;iRNA_m5C:0.999536712157813 41793 chr8 28906492 28906492 1 + A G UCEC 28906512 + 28906492 28906532 41 ATGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT GTGGGATAGATGTGCAGAGTCCAGGAGGCCACTCAAACAGT < 41bp 1 0.560465496887329 1 0.454638510942459 experiment 0.879069006225342 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906512 chr8:28906492 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_42751 0 0 1 0 4 Nucleus 1 0.500231654398511 1 0.999536691202978 hm5C_site_41793 DeepMRMD:1;iRNA_m5C:0.999536691202978 41794 chr10 43285938 43285938 1 + G A UCEC 43285946 + 43285926 43285966 41 ATTAAAACACAGGTTCTGGACGGAAGTTTACCCGGTACGAA ATTAAAACACAGATTCTGGACGGAAGTTTACCCGGTACGAA < 41bp 1 0.631280632171596 1 0.307745963335037 experiment 0.737438735656808 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43285946 chr10:43285938 synonymous SNV . 0 13 hm5C_associated_SNPs_42752 0 0 1 0 1 chromatin 1 0.500231643925602 1 0.999536712148796 hm5C_site_41794 DeepMRMD:1;iRNA_m5C:0.999536712148796 41795 chr6 27101025 27101025 1 + C A UCEC 27101032 + 27101012 27101052 41 GGTGCTGGAGTACCTGACCGCCGAGATCCTGGAACTGGCGG GGTGCTGGAGTACATGACCGCCGAGATCCTGGAACTGGCGG < 41bp 1 0.579182569842844 1 0.437135815620422 experiment 0.841634860314312 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101032 chr6:27101025 nonsynonymous SNV 0.916 3 14 hm5C_associated_SNPs_42753 0 0 1 0 0 Ribosome 1 0.50023163074875 1 0.999536738502501 hm5C_site_41795 DeepMRMD:1;iRNA_m5C:0.999536738502501 41796 chr9 2077747 2077747 1 + C T UCEC 2077760 + 2077740 2077780 41 TGCCCTCCTAATTAATGGGACCCTAAAGCATTACCAGGTAA TGCCCTCTTAATTAATGGGACCCTAAAGCATTACCAGGTAA < 41bp 1 0.105813966091847 1 0.0314510762691498 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2077760 chr9:2077747 synonymous SNV . 0 8 hm5C_associated_SNPs_42754 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41796 DeepMRMD:1;iRNA_m5C:0.999536712157815 41797 chr17 47115715 47115715 1 + T C UCEC 47115716 + 47115696 47115736 41 AAGCAGCAGCAAGTGGACATCCCCCTTCGGCTCCTGGTGCC AAGCAGCAGCAAGTGGACACCCCCCTTCGGCTCCTGGTGCC < 41bp 1 0.200025012945309 1 0.193391919136047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47115716 chr17:47115715 nonsynonymous SNV 0.958 1 20 hm5C_associated_SNPs_42755 0 0 1 0 1 Ribosome 1 0.500231643919925 1 0.999536712160151 hm5C_site_41797 DeepMRMD:1;iRNA_m5C:0.999536712160151 41798 chr17 47115715 47115715 1 + T C UCEC 47115718 + 47115698 47115738 41 GCAGCAGCAAGTGGACATCCCCCTTCGGCTCCTGGTGCCCA GCAGCAGCAAGTGGACACCCCCCTTCGGCTCCTGGTGCCCA < 41bp 1 0.0488919543533077 1 0.0583628118038177 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47115718 chr17:47115715 nonsynonymous SNV 0.958 1 18 hm5C_associated_SNPs_42756 0 0 1 0 1 Ribosome 1 0.50023164392146 1 0.99953671215708 hm5C_site_41798 DeepMRMD:1;iRNA_m5C:0.99953671215708 41799 chr7 66703375 66703375 1 + T C UCEC 66703395 + 66703375 66703415 41 TGGATCAAAAACGTTCAGCGCAAAGGATTATATGGCCAGAA CGGATCAAAAACGTTCAGCGCAAAGGATTATATGGCCAGAA < 41bp 1 0.347822496865088 1 0.128904014825821 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66703395 chr7:66703375 synonymous SNV . 0 1 hm5C_associated_SNPs_42757 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643916755 1 0.99953671216649 hm5C_site_41799 DeepMRMD:1;iRNA_m5C:0.99953671216649 41800 chr10 51581323 51581323 1 + C T UCEC 51581313 + 51581293 51581333 41 CTGAAGATTCAACTGTCCTGCTCTTTGAAGCTGACACAATT CTGAAGATTCAACTGTCCTGCTCTTTGAAGTTGACACAATT < 41bp 1 0.141815725049467 1 0.0799928307533264 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCOA4 ENSG00000138293 CDS Human other chr10:51581313 chr10:51581323 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_42758 0 0 1 0 2 Cytosol 1 0.500231643879689 1 0.999536712240622 hm5C_site_41800 DeepMRMD:1;iRNA_m5C:0.999536712240622 41801 chrX 17770008 17770008 1 + G A UCEC 17770024 + 17770004 17770044 41 GGTCGGTGGAAGCAGTGGTCCTATTTCTAAAACAAACAGAT GGTCAGTGGAAGCAGTGGTCCTATTTCTAAAACAAACAGAT < 41bp 1 0.273848131042253 1 0.184457838535309 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCML1 ENSG00000047634 CDS Human protein_coding chrX:17770024 chrX:17770008 synonymous SNV . 0 5 hm5C_associated_SNPs_42759 0 0 1 0 2 insoluble cytoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_41801 DeepMRMD:1;iRNA_m5C:0.999536712157815 41802 chr16 597855 597855 1 + C T UCEC 597866 + 597846 597886 41 CTCCAGCCCCGACTTCACCACCTGGTCATGTGCCAAGTGCA CTCCAGCCCTGACTTCACCACCTGGTCATGTGCCAAGTGCA < 41bp 1 0.0644142690496451 1 0.198636829853058 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CAPN15 ENSG00000103326 CDS Human protein_coding chr16:597866 chr16:597855 synonymous SNV . 0 10 hm5C_associated_SNPs_42760 0 0 1 0 0 chromatin 1 0.500231655672316 1 0.999536688655368 hm5C_site_41802 DeepMRMD:1;iRNA_m5C:0.999536688655368 41803 chr19 4685666 4685666 1 + G A UCEC 4685671 - 4685651 4685691 41 TTGCAGCCAGGGAAGAAGCACCCCACCGTCCTCTTTGTATA TTGCAGCCAGGGAAGAAGCACCCCATCGTCCTCTTTGTATA < 41bp 1 0.29236593932617 1 0.174520641565323 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPP9 ENSG00000142002 CDS Human protein_coding chr19:4685671 chr19:4685666 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_42761 0 0 0 0 1 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_41803 DeepMRMD:1;iRNA_m5C:0.999536712157818 41804 chr7 6631384 6631384 1 + C T UCEC 6631401 + 6631381 6631421 41 CAGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT CAGTCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCT < 41bp 1 0.152212285520699 1 0.178245723247528 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631401 chr7:6631384 synonymous SNV . 0 4 hm5C_associated_SNPs_42763 0 0 1 0 1 chromatin 1 0.500231643920577 1 0.999536712158847 hm5C_site_41804 DeepMRMD:1;iRNA_m5C:0.999536712158847 41805 chr7 6631384 6631384 1 + C T UCEC 6631402 + 6631382 6631422 41 AGCCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT AGTCCTCAAGGGAACAAAGCCGATGACAGCCGGATGAGCTT < 41bp 1 0.479922084495613 1 0.544707953929901 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631402 chr7:6631384 synonymous SNV . 0 3 hm5C_associated_SNPs_42764 0 0 1 0 1 chromatin 1 0.500231643957018 0.910584092140198 0.999536712085964 hm5C_site_41805 DeepMRMD:0.910584092140198;iRNA_m5C:0.999536712085964 41806 chr6 117869595 117869595 1 + T G UCEC 117869589 + 117869569 117869609 41 CCTCAACCAGACGGCCATGACTGCCCTTTTGTGAACACAAT CCTCAACCAGACGGCCATGACTGCCCGTTTGTGAACACAAT < 41bp 1 0.406615294547322 1 0.346199750900269 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117869589 chr6:117869595 nonsynonymous SNV 0.996 2 27 hm5C_associated_SNPs_42765 0 0 1 2 0 Endoplasmic reticulum 1 0.500231643930343 1 0.999536712139313 hm5C_site_41806 DeepMRMD:1;iRNA_m5C:0.999536712139313 41807 chr16 460305 460305 1 + A G UCEC 460313 + 460293 460333 41 TTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAA TTCAAGACCGTGGTGGACATCGATACCAGCGGCACCTTCAA < 41bp 1 0.624116465707557 1 0.413625776767731 experiment 0.751767068584885 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DECR2 ENSG00000242612 CDS Human protein_coding chr16:460313 chr16:460305 nonsynonymous SNV 0.823 0 13 hm5C_associated_SNPs_42766 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41807 DeepMRMD:1;iRNA_m5C:0.999536712157815 41808 chr9 135942486 135942486 1 + G A UCEC 135942479 + 135942459 135942499 41 TTGGTTCTGCCCCCAGGTGGCTGAGAAGGTGGGTTGCCCTG TTGGTTCTGCCCCCAGGTGGCTGAGAAAGTGGGTTGCCCTG < 41bp 1 0.52131821046863 1 0.405447691679001 experiment 0.95736357906274 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942479 chr9:135942486 synonymous SNV . 0 28 hm5C_associated_SNPs_42767 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41808 DeepMRMD:1;iRNA_m5C:0.999536712157815 41809 chr9 135942486 135942486 1 + G A UCEC 135942495 + 135942475 135942515 41 GTGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAG GTGGCTGAGAAAGTGGGTTGCCCTGTGGGTGATGCCGCCAG < 41bp 1 0.22837517256008 1 0.0630083382129669 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942495 chr9:135942486 synonymous SNV . 0 12 hm5C_associated_SNPs_42768 0 0 0 0 1 exosome 1 0.500231643923922 1 0.999536712152155 hm5C_site_41809 DeepMRMD:1;iRNA_m5C:0.999536712152155 41810 chr9 135942486 135942486 1 + G A UCEC 135942496 + 135942476 135942516 41 TGGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGG TGGCTGAGAAAGTGGGTTGCCCTGTGGGTGATGCCGCCAGG < 41bp 1 0.206236014589677 1 0.115200340747833 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942496 chr9:135942486 synonymous SNV . 0 11 hm5C_associated_SNPs_42769 0 0 0 0 1 exosome 1 0.500231643927772 1 0.999536712144457 hm5C_site_41810 DeepMRMD:1;iRNA_m5C:0.999536712144457 41811 chr9 135942486 135942486 1 + G A UCEC 135942497 + 135942477 135942517 41 GGCTGAGAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA GGCTGAGAAAGTGGGTTGCCCTGTGGGTGATGCCGCCAGGA < 41bp 1 0.507411160908207 1 0.653024077415466 experiment 0.985177678183586 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942497 chr9:135942486 synonymous SNV . 0 10 hm5C_associated_SNPs_42770 0 0 0 0 1 exosome 1 0.500231643921454 0.693951845169068 0.999536712157092 hm5C_site_41811 DeepMRMD:0.693951845169068;iRNA_m5C:0.999536712157092 41812 chr11 118369120 118369120 1 + G A UCEC 118369113 + 118369093 118369133 41 ATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCA ATTCTGCCAAAAGCCAGGAGCCACCGTAGGTTGCTGTCTCA < 41bp 1 0.0201284418290379 1 0.335254311561584 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2A ENSG00000118058 CDS Human protein_coding chr11:118369113 chr11:118369120 synonymous SNV . 0 28 hm5C_associated_SNPs_42771 0 0 1 0 1 Cytosol 1 0.500231643921102 1 0.999536712157797 hm5C_site_41812 DeepMRMD:1;iRNA_m5C:0.999536712157797 41813 chr5 36985785 36985785 1 + G T UCEC 36985791 + 36985771 36985811 41 CAGAGCGACATCGAGGGGATCAGTCTAGGGTTCGAAGACCA CAGAGCGACATCGATGGGATCAGTCTAGGGTTCGAAGACCA < 41bp 1 0.132032136568559 1 0.0308621227741241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:36985791 chr5:36985785 nonsynonymous SNV 0.982 4 15 hm5C_associated_SNPs_42773 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_41813 DeepMRMD:1;iRNA_m5C:0.999536712157816 41814 chr9 138378966 138378966 1 + C G UCEC 138378967 + 138378947 138378987 41 CCGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTG CCGCTCTTGGGACAGGGGGGCCAGCCAGGCCAGAGGTGCTG < 41bp 1 0.108060848954757 1 0.125800043344498 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378967 chr9:138378966 synonymous SNV . 0 20 hm5C_associated_SNPs_42774 0 0 1 0 0 Ribosome 1 0.50023160335401 1 0.999536793291979 hm5C_site_41814 DeepMRMD:1;iRNA_m5C:0.999536793291979 41815 chr9 138378966 138378966 1 + C G UCEC 138378968 + 138378948 138378988 41 CGCTCTTGGGACAGGGGGCCCAGCCAGGCCAGAGGTGCTGT CGCTCTTGGGACAGGGGGGCCAGCCAGGCCAGAGGTGCTGT < 41bp 1 0.300838205778909 1 0.499384820461273 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378968 chr9:138378966 synonymous SNV . 0 19 hm5C_associated_SNPs_42775 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41815 DeepMRMD:1;iRNA_m5C:0.999536712157815 41816 chr2 71780270 71780270 1 + T C UCEC 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTCGACATGACCCGCCTGCCGCTGGCCTCCA < 41bp 1 0.313285820552134 1 0.0149896144866943 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780270 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_42776 0 0 0 0 1 Nucleus 1 0.500231643902912 1 0.999536712194177 hm5C_site_41816 DeepMRMD:1;iRNA_m5C:0.999536712194177 41817 chr1 28857120 28857120 1 + C T UCEC 28857124 + 28857104 28857144 41 CTCCTGACCAGAAAACCCGACCAGGTGGCTCCGCGCCCGGG CTCCTGACCAGAAAACTCGACCAGGTGGCTCCGCGCCCGGG < 41bp 1 0.462618982722918 1 0.2137371301651 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RCC1 ENSG00000180198 CDS Human protein_coding chr1:28857124 chr1:28857120 synonymous SNV . 0 17 hm5C_associated_SNPs_42777 0 0 0 0 2 Ribosome 1 0.500231675354699 1 0.999536649290602 hm5C_site_41817 DeepMRMD:1;iRNA_m5C:0.999536649290602 41818 chr19 19308370 19308370 1 + C T UCEC 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGACGAGCGCGGCTTCACTCCCCTCATCTGGGCCTCCGCC < 41bp 1 0.35676114647514 1 0.172363787889481 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308370 synonymous SNV . 0 20 hm5C_associated_SNPs_42778 0 0 1 0 2 Ribosome 1 0.500231643921091 1 0.999536712157817 hm5C_site_41818 DeepMRMD:1;iRNA_m5C:0.999536712157817 41819 chr19 580412 580412 1 + C A UCEC 580394 + 580374 580414 41 TGCAGGGTGGACTCCGACGACCAGTGGGGAGAGTACTCCTG TGCAGGGTGGACTCCGACGACCAGTGGGGAGAGTACTCATG < 41bp 1 0.383445553999633 1 0.145904868841171 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BSG ENSG00000172270 CDS Human protein_coding chr19:580394 chr19:580412 synonymous SNV . 0 39 hm5C_associated_SNPs_42779 0 0 1 0 1 Ribosome 1 0.500233804730797 1 0.999532390538406 hm5C_site_41819 DeepMRMD:1;iRNA_m5C:0.999532390538406 41820 chr8 23146561 23146561 1 + T A UCEC 23146569 + 23146549 23146589 41 TCTCCAGTCGCCTCCGGTACCTGATCCATAGAACAGCAGAG TCTCCAGTCGCCACCGGTACCTGATCCATAGAACAGCAGAG < 41bp 1 0.326185066368591 1 0.0600094497203827 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23146569 chr8:23146561 nonsynonymous SNV 0.990 2 13 hm5C_associated_SNPs_42780 0 0 1 0 0 Cytosol 1 0.500231648771093 1 0.999536702457814 hm5C_site_41820 DeepMRMD:1;iRNA_m5C:0.999536702457814 41821 chr7 102937922 102937922 1 + G A UCEC 102937920 + 102937900 102937940 41 AGCAGAAATGGCGGCTGCGGCGGCTCGAGTGGTGTTGTCAT AGCAGAAATGGCGGCTGCGGCGACTCGAGTGGTGTTGTCAT < 41bp 1 0.546885545852565 1 0.528308510780334 experiment 0.906228908294869 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PMPCB ENSG00000105819 CDS Human protein_coding chr7:102937920 chr7:102937922 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_42781 0 0 1 0 1 Ribosome 1 0.50023164481449 0.943382978439332 0.99953671037102 hm5C_site_41821 DeepMRMD:0.943382978439332;iRNA_m5C:0.99953671037102 41822 chr19 7604912 7604912 1 + C A UCEC 7604931 + 7604911 7604951 41 CCTCTGAAGTGCTTTATATGCTCAAGAACGTCCGGTCAGTG CATCTGAAGTGCTTTATATGCTCAAGAACGTCCGGTCAGTG < 41bp 1 0.637792934601011 1 0.352538824081421 experiment 0.724414130797978 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7604931 chr19:7604912 synonymous SNV . 0 2 hm5C_associated_SNPs_42782 0 0 1 0 1 Ribosome 1 0.500231643982914 1 0.999536712034173 hm5C_site_41822 DeepMRMD:1;iRNA_m5C:0.999536712034173 41823 chr22 20128455 20128455 1 + C T UCEC 20128461 + 20128441 20128481 41 CGCCTTTCCTTAGGCCTGAACTCCTGGACCGAGCTGCACCG CGCCTTTCCTTAGGTCTGAACTCCTGGACCGAGCTGCACCG < 41bp 1 0.361504972910689 1 0.874370455741882 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20128461 chr22:20128455 nonsynonymous SNV 0.195 3 15 hm5C_associated_SNPs_42783 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921077 0.251259088516236 0.999536712157847 hm5C_site_41823 DeepMRMD:0.251259088516236;iRNA_m5C:0.999536712157847 41824 chr2 32773051 32773051 1 + G A UCEC 32773033 + 32773013 32773053 41 GGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGGCTGGA GGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGGCTAGA < 41bp 1 0.206184248997308 1 0.098798543214798 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773033 chr2:32773051 synonymous SNV . 0 39 hm5C_associated_SNPs_42784 0 0 1 0 1 Nucleus 1 0.500231644783599 1 0.999536710432802 hm5C_site_41824 DeepMRMD:1;iRNA_m5C:0.999536710432802 41825 chr2 32773051 32773051 1 + G A UCEC 32773043 + 32773023 32773063 41 TGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACAT TGGAACAAGCCTTAACTAAGCAAAGGCTAGAAGAGGAACAT < 41bp 1 0.175562037434025 1 0.633621037006378 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32773043 chr2:32773051 synonymous SNV . 0 29 hm5C_associated_SNPs_42785 0 0 1 0 1 Nucleus 1 0.500231643929557 0.732757925987244 0.999536712140886 hm5C_site_41825 DeepMRMD:0.732757925987244;iRNA_m5C:0.999536712140886 41826 chrX 21874924 21874924 1 + C T UCEC 21874912 + 21874892 21874932 41 TAGGCAACGACTTGGAGGACCAGTTGGCCCTCCCGGATAGC TAGGCAACGACTTGGAGGACCAGTTGGCCCTCTCGGATAGC < 41bp 1 0.172551379896988 1 0.122865319252014 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YY2 ENSG00000230797 CDS Human protein_coding chrX:21874912 chrX:21874924 nonsynonymous SNV 0.001 2 33 hm5C_associated_SNPs_42786 0 0 0 0 0 exosome 1 0.500231642441452 1 0.999536715117096 hm5C_site_41826 DeepMRMD:1;iRNA_m5C:0.999536715117096 41827 chr9 104307082 104307082 1 + T C UCEC 104307070 + 104307050 104307090 41 TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTT TAATCTGATAGTGGAGGAAGCAGTGCAGGAGCCGAACTCTT < 41bp 1 0.321250293386697 1 0.612744390964508 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307070 chr9:104307082 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_42787 0 0 1 0 2 nucleus 1 0.500231643921092 0.774511218070984 0.999536712157815 hm5C_site_41827 DeepMRMD:0.774511218070984;iRNA_m5C:0.999536712157815 41828 chr2 71654022 71654022 1 + C T UCEC 71654019 + 71653999 71654039 41 CAGTGGCTGAAGAACAAGATCTCCTCAAACAGGAACGCTTG CAGTGGCTGAAGAACAAGATCTCTTCAAACAGGAACGCTTG < 41bp 1 0.220342632416261 1 0.30475515127182 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71654019 chr2:71654022 nonsynonymous SNV 0.975 3 24 hm5C_associated_SNPs_42788 0 0 1 0 0 Nucleus 1 0.500231643921235 1 0.999536712157529 hm5C_site_41828 DeepMRMD:1;iRNA_m5C:0.999536712157529 41829 chr10 43292212 43292212 1 + A T UCEC 43292225 + 43292205 43292245 41 GACGATGACCTTGAGAGGAGCTCAGCGGAAGAAGGGGAAGC GACGATGTCCTTGAGAGGAGCTCAGCGGAAGAAGGGGAAGC < 41bp 1 0.362925524427924 1 0.279264897108078 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292225 chr10:43292212 nonsynonymous SNV 0.988 4 8 hm5C_associated_SNPs_42790 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_41829 DeepMRMD:1;iRNA_m5C:0.999536712157815 41830 chr2 135160678 135160678 1 + G A UCEC 135160666 + 135160646 135160686 41 TACGTGAAAAACCATGGTATCCTCAGTGGACGGGACCTGCA TACGTGAAAAACCATGGTATCCTCAGTGGACGAGACCTGCA < 41bp 1 0.194578467706426 1 0.065963476896286 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135160666 chr2:135160678 synonymous SNV . 0 33 hm5C_associated_SNPs_42791 0 0 1 0 1 Ribosome 1 0.500231643987452 1 0.999536712025096 hm5C_site_41830 DeepMRMD:1;iRNA_m5C:0.999536712025096 41831 chr3 184039158 184039158 1 + T C UCEC 184039162 + 184039142 184039182 41 CCCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCA CCCAGCCTTCGTCGCCCTCTCCGACCCCATCACCATCCCCA < 41bp 1 0.216134008516784 1 0.418859213590622 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039162 chr3:184039158 synonymous SNV . 0 17 hm5C_associated_SNPs_42792 0 0 1 0 1 Nucleus 1 0.500231643921081 1 0.999536712157838 hm5C_site_41831 DeepMRMD:1;iRNA_m5C:0.999536712157838 41832 chr3 184039158 184039158 1 + T C UCEC 184039163 + 184039143 184039183 41 CCAGCCTTCGTCGCCTTCTCCGACCCCATCACCATCCCCAG CCAGCCTTCGTCGCCCTCTCCGACCCCATCACCATCCCCAG < 41bp 1 0.385664312300736 1 0.787561893463135 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184039163 chr3:184039158 synonymous SNV . 0 16 hm5C_associated_SNPs_42793 0 0 1 0 1 Nucleus 1 0.50023164392729 0.42487621307373 0.99953671214542 hm5C_site_41832 DeepMRMD:0.42487621307373;iRNA_m5C:0.99953671214542 41833 chr9 139234220 139234220 1 + G A UCEC 139234211 + 139234191 139234231 41 CCTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGCGCAGG CCTGGGAAATGCCTACGTGTCCATGGGGCACCCAGCGCAGG < 41bp 1 0.251469869275254 1 0.11086717247963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139234211 chr9:139234220 nonsynonymous SNV 0.992 1 30 hm5C_associated_SNPs_42794 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41833 DeepMRMD:1;iRNA_m5C:0.999536712157815 41834 chr9 139234220 139234220 1 + G A UCEC 139234212 + 139234192 139234232 41 CTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGCGCAGGC CTGGGAAATGCCTACGTGTCCATGGGGCACCCAGCGCAGGC < 41bp 1 0.684980430610098 1 0.259187608957291 experiment 0.630039138779803 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139234212 chr9:139234220 nonsynonymous SNV 0.992 1 29 hm5C_associated_SNPs_42795 0 0 0 0 1 Cytosol 1 0.500231643921607 1 0.999536712156786 hm5C_site_41834 DeepMRMD:1;iRNA_m5C:0.999536712156786 41835 chr1 110034244 110034244 1 + T G UCEC 110034237 + 110034217 110034257 41 TATTGCCGGCCAGTGAAGGCCAAGCACTGTCAGGCTGGTGC TATTGCCGGCCAGTGAAGGCCAAGCACGGTCAGGCTGGTGC < 41bp 1 0.368704031921983 1 0.268638074398041 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110034237 chr1:110034244 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_42796 0 0 0 0 1 nucleoplasm 1 0.500231643851384 1 0.999536712297231 hm5C_site_41835 DeepMRMD:1;iRNA_m5C:0.999536712297231 41836 chr19 46026018 46026018 1 + A G UCEC 46026006 + 46025986 46026026 41 CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGA CCTCAGGGGGGCCCACAGCCCCCAAAGCTGAGGGTGGTCGA < 41bp 1 0.611133460121702 1 0.560025215148926 experiment 0.777733079756596 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026006 chr19:46026018 nonsynonymous SNV 0.475 0 33 hm5C_associated_SNPs_42797 0 0 1 0 3 Ribosome 1 0.500231643921114 0.879949569702148 0.999536712157771 hm5C_site_41836 DeepMRMD:0.879949569702148;iRNA_m5C:0.999536712157771 41837 chr19 46026018 46026018 1 + A G UCEC 46026007 + 46025987 46026027 41 CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAA CTCAGGGGGGCCCACAGCCCCCAAAGCTGAGGGTGGTCGAA < 41bp 1 0.3814543132882 1 0.306441605091095 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026007 chr19:46026018 nonsynonymous SNV 0.475 0 32 hm5C_associated_SNPs_42798 0 0 1 0 3 Ribosome 1 0.500231643919859 1 0.999536712160282 hm5C_site_41837 DeepMRMD:1;iRNA_m5C:0.999536712160282 41838 chr19 46026018 46026018 1 + A G UCEC 46026008 + 46025988 46026028 41 TCAGGGGGGCCCACAGCCCCCAAAGCTGAGAGTGGTCGAAG TCAGGGGGGCCCACAGCCCCCAAAGCTGAGGGTGGTCGAAG < 41bp 1 0.491224616165032 1 0.489049553871155 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46026008 chr19:46026018 nonsynonymous SNV 0.475 0 31 hm5C_associated_SNPs_42799 0 0 1 0 3 Ribosome 1 0.500231643781911 1 0.999536712436179 hm5C_site_41838 DeepMRMD:1;iRNA_m5C:0.999536712436179 41839 chr19 45797628 45797628 1 + A G UCEC 45797648 + 45797628 45797668 41 ATGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG GTGACCCGCAGAAACACCTACGTTTGCACAGAACGCCCGGG < 41bp 1 0.0516367975656757 1 0.0734494030475616 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45797648 chr19:45797628 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_42800 0 0 1 0 2 Nucleus 1 0.50023222719818 1 0.99953554560364 hm5C_site_41839 DeepMRMD:1;iRNA_m5C:0.99953554560364 Brown vs. black hair color 41840 chr5 14359526 14359526 1 + G T UCEC 14359530 + 14359510 14359550 41 TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG TCAACCACATTGAGACTGTGCTGCAGCAGCTGGACGAGGCG < 41bp 1 0.410608747056511 1 0.562633275985718 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359530 chr5:14359526 synonymous SNV . 0 17 hm5C_associated_SNPs_42801 0 0 1 0 1 Nucleus 1 0.500231645709473 0.874733448028564 0.999536708581054 hm5C_site_41840 DeepMRMD:0.874733448028564;iRNA_m5C:0.999536708581054 41841 chr3 122399827 122399827 1 + A G UCEC 122399812 + 122399792 122399832 41 AGAACTTGAACACCAAGTTGCAGATGTACTTCCAGAGCCCG AGAACTTGAACACCAAGTTGCAGATGTACTTCCAGGGCCCG < 41bp 1 0.42409582567384 1 0.369675993919373 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PARP14 ENSG00000173193 CDS Human protein_coding chr3:122399812 chr3:122399827 nonsynonymous SNV 0.896 2 36 hm5C_associated_SNPs_42802 0 0 0 0 1 Nucleus 1 0.500231643921034 1 0.999536712157931 hm5C_site_41841 DeepMRMD:1;iRNA_m5C:0.999536712157931 41842 chrX 73043774 73043774 1 + G A UCEC 73043778 - 73043758 73043798 41 AGATAGGAATGAACTATTGGCTTACTGAATGGTGATTACTT AGATAGGAATGAACTATTGGCTTATTGAATGGTGATTACTT < 41bp 1 0.030547359467151 1 0.0333169102668762 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043778 chrX:73043774 . . 0 25 hm5C_associated_SNPs_42803 0 0 1 0 0 unknown 1 0.500231643917338 1 0.999536712165324 hm5C_site_41842 DeepMRMD:1;iRNA_m5C:0.999536712165324 41843 chr11 6591854 6591854 1 + G T UCEC 6591872 + 6591852 6591892 41 AAGGGAGCTGGATGCAATGGCAGAGTGCAAGGCCCAGATGC AATGGAGCTGGATGCAATGGCAGAGTGCAAGGCCCAGATGC < 41bp 1 0.396761381740713 1 0.809083104133606 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DNHD1 ENSG00000179532 CDS Human protein_coding chr11:6591872 chr11:6591854 nonsynonymous SNV 0.873 1 3 hm5C_associated_SNPs_42804 0 0 0 0 2 chromatin 1 0.500231641966274 0.381833791732788 0.999536716067451 hm5C_site_41843 DeepMRMD:0.381833791732788;iRNA_m5C:0.999536716067451 41844 chr1 949635 949635 1 + G A UCEC 949655 + 949635 949675 41 GCAGCAGCACCTACGAGGTACGGCTGACGCAGACCGTGGCC ACAGCAGCACCTACGAGGTACGGCTGACGCAGACCGTGGCC < 41bp 1 0.636345731581348 1 0.390745639801025 experiment 0.727308536837305 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ISG15 ENSG00000187608 CDS Human protein_coding chr1:949655 chr1:949635 nonsynonymous SNV 0.009 0 1 hm5C_associated_SNPs_42805 0 0 1 0 0 Ribosome 1 0.500231643921749 1 0.999536712156503 hm5C_site_41844 DeepMRMD:1;iRNA_m5C:0.999536712156503 41845 chr8 87447722 87447722 1 + G T UCEC 87447738 + 87447718 87447758 41 TTTAGGTGGAAGCTTGCTCACTTCCGTTATTTGTGCCAGGT TTTATGTGGAAGCTTGCTCACTTCCGTTATTTGTGCCAGGT < 41bp 1 0.268272045928197 1 0.0610020458698273 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WWP1 ENSG00000123124 CDS Human protein_coding chr8:87447738 chr8:87447722 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_42806 0 0 1 0 2 Cytosol 1 0.500231643921075 1 0.99953671215785 hm5C_site_41845 DeepMRMD:1;iRNA_m5C:0.99953671215785 41846 chr17 53844737 53844737 1 + G T UCEC 53844740 + 53844720 53844760 41 GTCTTTGGTGTTCTGGAGGACTGCTCACCAACTCTACTGGC GTCTTTGGTGTTCTGGATGACTGCTCACCAACTCTACTGGC < 41bp 1 0.452351196957464 1 0.094639390707016 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53844740 chr17:53844737 nonsynonymous SNV 0.037 0 18 hm5C_associated_SNPs_42807 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41846 DeepMRMD:1;iRNA_m5C:0.999536712157815 41847 chr22 24574037 24574037 1 + C A UCEC 24574025 + 24574005 24574045 41 CCGGCCCTCTCCGCAGTCAGCCATCCTTTCTGCCCAGTCTG CCGGCCCTCTCCGCAGTCAGCCATCCTTTCTGACCAGTCTG < 41bp 1 0.0290641798719509 1 0.0739536881446838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24574025 chr22:24574037 nonsynonymous SNV 0.982 4 33 hm5C_associated_SNPs_42808 0 0 0 0 1 Cytosol 1 0.500231643918332 1 0.999536712163336 hm5C_site_41847 DeepMRMD:1;iRNA_m5C:0.999536712163336 41848 chr22 24574037 24574037 1 + C A UCEC 24574029 + 24574009 24574049 41 CCCTCTCCGCAGTCAGCCATCCTTTCTGCCCAGTCTGCTGC CCCTCTCCGCAGTCAGCCATCCTTTCTGACCAGTCTGCTGC < 41bp 1 0.0320017414548379 1 0.0365329682826996 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24574029 chr22:24574037 nonsynonymous SNV 0.982 4 29 hm5C_associated_SNPs_42809 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41848 DeepMRMD:1;iRNA_m5C:0.999536712157815 41849 chr9 140110225 140110225 1 + C T UCEC 140110226 + 140110206 140110246 41 GTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA GTAGCCCCCTTCCGAGCAGTCATCCAGGAGCGTGTGGCCCA < 41bp 1 0.177402562958794 1 0.0554902255535126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110226 chr9:140110225 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_42810 0 0 1 0 1 chromatin 1 0.500231643855042 1 0.999536712289916 hm5C_site_41849 DeepMRMD:1;iRNA_m5C:0.999536712289916 41850 chr9 140110225 140110225 1 + C T UCEC 140110236 + 140110216 140110256 41 TCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAGACT TCCGAGCAGTCATCCAGGAGCGTGTGGCCCAGGGCCAGACT < 41bp 1 0.284578468763411 1 0.136406600475311 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110236 chr9:140110225 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_42811 0 0 1 0 1 chromatin 1 0.500231645664663 1 0.999536708670675 hm5C_site_41850 DeepMRMD:1;iRNA_m5C:0.999536708670675 41851 chr14 56233337 56233337 1 + T C UCEC 56233356 + 56233336 56233376 41 GTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGA GCGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGA < 41bp 1 0.501964199979888 1 0.311522513628006 experiment 0.996071600040225 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233356 chr14:56233337 . . 0 2 hm5C_associated_SNPs_42812 0 0 0 0 0 unknown 1 0.500231643772063 1 0.999536712455874 hm5C_site_41851 DeepMRMD:1;iRNA_m5C:0.999536712455874 41852 chr16 16208691 16208691 1 + G A UCEC 16208711 + 16208691 16208731 41 GTGGACCTGCTGCACAGCATCCTGCGGTCACCCATGAGCTT ATGGACCTGCTGCACAGCATCCTGCGGTCACCCATGAGCTT < 41bp 1 0.1287781187022 1 0.259900987148285 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16208711 chr16:16208691 nonsynonymous SNV 0.003 1 1 hm5C_associated_SNPs_42813 0 0 1 0 0 Mitochondrion 1 0.500231643921092 1 0.999536712157817 hm5C_site_41852 DeepMRMD:1;iRNA_m5C:0.999536712157817 41853 chr1 235600761 235600761 1 + G A UCEC 235600742 + 235600722 235600762 41 AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGC AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGAC < 41bp 1 0.594129787726541 1 0.0628799200057983 experiment 0.811740424546918 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235600742 chr1:235600761 nonsynonymous SNV 0.002 0 40 hm5C_associated_SNPs_42814 0 0 1 0 0 chromatin 1 0.500231643051934 1 0.999536713896131 hm5C_site_41853 DeepMRMD:1;iRNA_m5C:0.999536713896131 41854 chr3 148559711 148559711 1 + G T UCEC 148559693 + 148559673 148559713 41 TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGT TGGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGATGT < 41bp 1 0.141671104735021 1 0.356166988611221 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559693 chr3:148559711 nonsynonymous SNV 0.995 1 39 hm5C_associated_SNPs_42815 0 0 0 0 1 exosome 1 0.500231454627192 1 0.999537090745616 hm5C_site_41854 DeepMRMD:1;iRNA_m5C:0.999537090745616 41855 chr3 148559711 148559711 1 + G T UCEC 148559694 + 148559674 148559714 41 GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGAGGTC GGATTTCTCCTGCATTCTGCCAGTGGTTTGTAAGAGATGTC < 41bp 1 0.404089491407241 1 0.404563248157501 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPB1 ENSG00000153002 CDS Human protein_coding chr3:148559694 chr3:148559711 nonsynonymous SNV 0.995 1 38 hm5C_associated_SNPs_42816 0 0 0 0 1 exosome 1 0.500231643904625 1 0.999536712190749 hm5C_site_41855 DeepMRMD:1;iRNA_m5C:0.999536712190749 41856 chr14 61789177 61789177 1 + G A UCEC 61789158 + 61789138 61789178 41 GAGCTGCTGCGCACGACCGGCGCCTCGGACACCTTCGAGGG GAGCTGCTGCGCACGACCGGCGCCTCGGACACCTTCGAGAG < 41bp 1 0.429861925238942 1 0.227638334035873 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKCH ENSG00000027075 CDS Human protein_coding chr14:61789158 chr14:61789177 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_42817 0 0 0 0 1 Cytosol 1 0.500231643875092 1 0.999536712249816 hm5C_site_41856 DeepMRMD:1;iRNA_m5C:0.999536712249816 41857 chr15 91358377 91358377 1 + C T UCEC 91358367 + 91358347 91358387 41 TAGAAAGATATCTTCCAAAACGAAATCCTCCAGCATCATTG TAGAAAGATATCTTCCAAAACGAAATCCTCTAGCATCATTG < 41bp 1 0.59881142771078 1 0.0991764664649963 experiment 0.80237714457844 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91358367 chr15:91358377 synonymous SNV . 0 31 hm5C_associated_SNPs_42818 0 0 1 0 1 Ribosome 1 0.500231640010063 1 0.999536719979873 hm5C_site_41857 DeepMRMD:1;iRNA_m5C:0.999536719979873 41858 chr6 33411137 33411137 1 + T C UCEC 33411133 + 33411113 33411153 41 GAACCCTCTCTTCCACATGGCTGCTGATGGGCCAGGTCCCC GAACCCTCTCTTCCACATGGCTGCCGATGGGCCAGGTCCCC < 41bp 1 0.150896743592181 1 0.0113314688205719 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33411133 chr6:33411137 synonymous SNV . 0 25 hm5C_associated_SNPs_42819 0 0 1 0 0 chromatin 1 0.500231640321512 1 0.999536719356976 hm5C_site_41858 DeepMRMD:1;iRNA_m5C:0.999536719356976 Preschool internalizing problems 41859 chr14 64628983 64628983 1 + C T UCEC 64628971 + 64628951 64628991 41 ACAACCTGGCAGAGATCCTGCCCCCAGCCCTGCAGGACATA ACAACCTGGCAGAGATCCTGCCCCCAGCCCTGTAGGACATA < 41bp 1 0.0769260820003325 1 0.0436230301856995 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64628971 chr14:64628983 stopgain 0.726 0 33 hm5C_associated_SNPs_42820 0 0 1 0 1 Nucleus 1 0.500231644058313 1 0.999536711883375 hm5C_site_41859 DeepMRMD:1;iRNA_m5C:0.999536711883375 41860 chr12 6638682 6638682 1 + G A UCEC 6638688 + 6638668 6638708 41 CCTTCCTGCAGACAGCTCCTCTCCTACATCACCAAGGACAA CCTTCCTGCAGACAACTCCTCTCCTACATCACCAAGGACAA < 41bp 1 0.284679284389495 1 0.0590895712375641 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6638688 chr12:6638682 synonymous SNV . 0 15 hm5C_associated_SNPs_42821 0 0 1 0 2 Nucleus 1 0.500231643921097 1 0.999536712157806 hm5C_site_41860 DeepMRMD:1;iRNA_m5C:0.999536712157806 41861 chr18 13056665 13056665 1 + A G UCEC 13056650 + 13056630 13056670 41 TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCAT TCCTGTGCCGTCTGTTGGTACAAACTGTGGAATTGGACCAT < 41bp 1 0.120198253212999 1 0.305841505527496 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056650 chr18:13056665 nonsynonymous SNV 0.210 0 36 hm5C_associated_SNPs_42822 0 0 1 0 1 Nucleus 1 0.500231643972215 1 0.99953671205557 hm5C_site_41861 DeepMRMD:1;iRNA_m5C:0.99953671205557 41862 chr18 13056665 13056665 1 + A G UCEC 13056654 + 13056634 13056674 41 GTGCCGTCTGTTGGTACAAACTGTGGAATTGAACCATGGGA GTGCCGTCTGTTGGTACAAACTGTGGAATTGGACCATGGGA < 41bp 1 0.319949517148013 1 0.255760014057159 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13056654 chr18:13056665 nonsynonymous SNV 0.210 0 32 hm5C_associated_SNPs_42823 0 0 1 0 1 Nucleus 1 0.500231643921028 1 0.999536712157943 hm5C_site_41862 DeepMRMD:1;iRNA_m5C:0.999536712157943 41863 chr19 7585178 7585178 1 + G A UCEC 7585187 + 7585167 7585207 41 TACGCCTGCCCGCACTGCTCCAAGGCCTTCGGCCAGAGCTC TACGCCTGCCCACACTGCTCCAAGGCCTTCGGCCAGAGCTC < 41bp 1 0.584736308592681 1 0.612827479839325 experiment 0.830527382814638 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control ZNF358 ENSG00000198816 CDS Human protein_coding chr19:7585187 chr19:7585178 synonymous SNV . 0 12 hm5C_associated_SNPs_42824 0 0 1 0 0 Cytosol 1 0.500231643921092 0.77434504032135 0.999536712157815 hm5C_site_41863 DeepMRMD:0.77434504032135;iRNA_m5C:0.999536712157815 41864 chr9 19336400 19336400 1 + T C UCEC 19336394 + 19336374 19336414 41 AAAAGACTGTGCAAAGGTCACAGGTCTCCTCAATATCAGGT AAAAGACTGTGCAAAGGTCACAGGTCCCCTCAATATCAGGT < 41bp 1 0.313162210356418 1 0.420017689466476 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336394 chr9:19336400 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_42825 0 0 1 0 1 Nucleus 1 0.500231291739361 1 0.999537416521279 hm5C_site_41864 DeepMRMD:1;iRNA_m5C:0.999537416521279 41865 chr21 34925037 34925037 1 + T C UCEC 34925019 + 34924999 34925039 41 CCCAACAATGCCACCGTTGCCACCTGAGGAGCCACCAATGA CCCAACAATGCCACCGTTGCCACCTGAGGAGCCACCAACGA < 41bp 1 0.627391437873319 1 0.388439208269119 experiment 0.745217124253362 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SON ENSG00000159140 CDS Human protein_coding chr21:34925019 chr21:34925037 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_42826 0 0 1 0 0 Nucleus 1 0.500231709956672 1 0.999536580086656 hm5C_site_41865 DeepMRMD:1;iRNA_m5C:0.999536580086656 41866 chr17 4859869 4859869 1 + T C UCEC 4859885 + 4859865 4859905 41 CAGGTGCAAACTGGCTCAGTCTAATGGCTGGGGGGTGATGG CAGGCGCAAACTGGCTCAGTCTAATGGCTGGGGGGTGATGG < 41bp 1 0.362455283022408 1 0.0988220274448395 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859885 chr17:4859869 nonsynonymous SNV 0.915 5 5 hm5C_associated_SNPs_42827 0 0 1 0 1 nucleus 1 0.500231643919542 1 0.999536712160915 hm5C_site_41866 DeepMRMD:1;iRNA_m5C:0.999536712160915 41867 chr6 145103206 145103206 1 + C T UCEC 145103189 + 145103169 145103209 41 ATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAACGTT ATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAATGTT < 41bp 1 0.142466248675335 1 0.144589841365814 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145103189 chr6:145103206 synonymous SNV . 0 38 hm5C_associated_SNPs_42828 0 0 0 0 1 Nucleus 1 0.500231643921091 1 0.999536712157817 hm5C_site_41867 DeepMRMD:1;iRNA_m5C:0.999536712157817 41868 chr12 1517390 1517390 1 + A G UCEC 1517370 + 1517350 1517390 41 CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAA CGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAG < 41bp 1 0.0295054347713061 1 0.0938459634780884 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ERC1 ENSG00000082805 CDS Human protein_coding chr12:1517370 chr12:1517390 nonsynonymous SNV 0.997 4 41 hm5C_associated_SNPs_42829 0 0 0 0 2 chromatin 1 0.500215987351311 1 0.999568025297378 hm5C_site_41868 DeepMRMD:1;iRNA_m5C:0.999568025297378 41869 chr19 14512336 14512336 1 + C T UCEC 14512320 + 14512300 14512340 41 CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGCCTAA CTTGAAGATATCATGAGGATCCTGGCCAAGAGCCTGTCTAA < 41bp 1 0.237933041017746 1 0.0492123961448669 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRE5 ENSG00000123146 CDS Human protein_coding chr19:14512320 chr19:14512336 nonsynonymous SNV 0.003 1 37 hm5C_associated_SNPs_42830 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41869 DeepMRMD:1;iRNA_m5C:0.999536712157815 41870 chr1 27089626 27089626 1 + C T UCEC 27089608 + 27089588 27089628 41 ACCTTATGGCACACTCCCTCCAGGGAGGATGAGTCACGCCT ACCTTATGGCACACTCCCTCCAGGGAGGATGAGTCACGTCT < 41bp 1 0.613181766061736 1 0.890716910362244 experiment 0.773636467876527 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27089608 chr1:27089626 nonsynonymous SNV 0.882 1 39 hm5C_associated_SNPs_42831 0 0 1 0 0 Nucleus 1 0.500231646552955 0.218566179275512 0.99953670689409 hm5C_site_41870 DeepMRMD:0.218566179275512;iRNA_m5C:0.99953670689409 41871 chr5 61669593 61669593 1 + G A UCEC 61669583 + 61669563 61669603 41 ATAATGCACCATCCACCAAACCAGATTGATGACTTAGAGAC ATAATGCACCATCCACCAAACCAGATTGATAACTTAGAGAC < 41bp 1 0.699749732568047 1 0.38718655705452 experiment 0.600500534863906 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF2A ENSG00000068796 CDS Human protein_coding chr5:61669583 chr5:61669593 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_42832 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41871 DeepMRMD:1;iRNA_m5C:0.999536712157815 41872 chr13 24858274 24858274 1 + T C UCEC 24858291 + 24858271 24858311 41 AGTTTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG AGTCTCTTCAGATGGAGGTACTGAGCCCTCTGCCTTAGTGG < 41bp 1 0.149686530030553 1 0.316577911376953 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24858291 chr13:24858274 synonymous SNV . 0 4 hm5C_associated_SNPs_42833 0 0 0 0 1 Cytosol 1 0.5002316439236 1 0.9995367121528 hm5C_site_41872 DeepMRMD:1;iRNA_m5C:0.9995367121528 41873 chr4 26622291 26622291 1 + T C UCEC 26622308 + 26622288 26622328 41 TGGTATACATGAGGAAAGCACAGGTTGGCTATTGTTCAATT TGGCATACATGAGGAAAGCACAGGTTGGCTATTGTTCAATT < 41bp 1 0.490203259574952 1 0.407135009765625 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26622308 chr4:26622291 nonsynonymous SNV 0.997 0 4 hm5C_associated_SNPs_42834 0 0 1 0 2 Endoplasmic reticulum 1 0.500280933355759 1 0.999438133288483 hm5C_site_41873 DeepMRMD:1;iRNA_m5C:0.999438133288483 41874 chr3 4859841 4859841 1 + A G UCEC 4859828 + 4859808 4859848 41 AAGAGCACATCAAGGAAGAACACAACATGTGGCACTATCTG AAGAGCACATCAAGGAAGAACACAACATGTGGCGCTATCTG < 41bp 1 0.173657773337733 1 0.305477619171143 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4859828 chr3:4859841 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_42835 0 0 1 0 2 Endoplasmic reticulum 1 0.50018465440101 1 0.999630691197979 hm5C_site_41874 DeepMRMD:1;iRNA_m5C:0.999630691197979 41875 chr2 204082003 204082003 1 + T C UCEC 204082013 + 204081993 204082033 41 TTCTCGAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA TTCTCGAAAACTTTGGGGATCGAGCAAGCGGCTCAGCCAGA < 41bp 1 0.218974271638519 1 0.386976212263107 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204082013 chr2:204082003 nonsynonymous SNV 0.997 0 11 hm5C_associated_SNPs_42836 0 0 1 0 1 chromatin 1 0.500231643921091 1 0.999536712157817 hm5C_site_41875 DeepMRMD:1;iRNA_m5C:0.999536712157817 41876 chr1 171756895 171756895 1 + T C UCEC 171756878 + 171756858 171756898 41 TCTGGTTGTACCTTCAGGTCCCCTTTCTGTCTGTGGGTGGG TCTGGTTGTACCTTCAGGTCCCCTTTCTGTCTGTGGGCGGG < 41bp 1 0.081674205820524 1 0.0246005356311798 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171756878 chr1:171756895 synonymous SNV . 0 38 hm5C_associated_SNPs_42837 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_41876 DeepMRMD:1;iRNA_m5C:0.999536712157814 41877 chr17 42636648 42636648 1 + T C UCEC 42636652 + 42636632 42636672 41 CTCATGACGCTCATCGTGGGCATCACGTCGGGCTTCTGGAT CTCATGACGCTCATCGCGGGCATCACGTCGGGCTTCTGGAT < 41bp 1 0.229154716478791 1 0.0801604986190796 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FZD2 ENSG00000180340 CDS Human protein_coding chr17:42636652 chr17:42636648 nonsynonymous SNV 1.000 5 17 hm5C_associated_SNPs_42838 0 0 1 0 0 exosome 1 0.500231643822532 1 0.999536712354936 hm5C_site_41877 DeepMRMD:1;iRNA_m5C:0.999536712354936 41878 chr16 11066817 11066817 1 + C A UCEC 11066834 + 11066814 11066854 41 GCACTACATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA GCAATACATCCGAGATAAAACTGCTGTTCCTTACTTCTCCA < 41bp 1 0.385835677465529 1 0.0309991240501404 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11066834 chr16:11066817 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_42839 0 0 1 0 1 Cytosol 1 0.500231622850694 1 0.999536754298612 hm5C_site_41878 DeepMRMD:1;iRNA_m5C:0.999536754298612 41879 chr1 249212035 249212035 1 + G A UCEC 249212016 + 249211996 249212036 41 AGTGAGGAGATCATCGTGTGCCGCTGGCACGATAGCAGCGT AGTGAGGAGATCATCGTGTGCCGCTGGCACGATAGCAGCAT < 41bp 1 0.432978345543046 1 0.141247719526291 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212016 chr1:249212035 nonsynonymous SNV 0.587 2 40 hm5C_associated_SNPs_42840 0 0 0 0 0 Cytosol 1 0.50023167378655 1 0.999536652426899 hm5C_site_41879 DeepMRMD:1;iRNA_m5C:0.999536652426899 41880 chrX 21869664 21869664 1 + A T UCEC 21869650 + 21869630 21869670 41 CCTGGTATAAATTTACCCGTCAATCAACTGACCTATTTCTT CCTGGTATAAATTTACCCGTCAATCAACTGACCTTTTTCTT < 41bp 1 0.0970095674749986 1 0.118871510028839 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21869650 chrX:21869664 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_42841 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921106 1 0.999536712157787 hm5C_site_41880 DeepMRMD:1;iRNA_m5C:0.999536712157787 41881 chr17 1640907 1640907 1 + C T UCEC 1640921 + 1640901 1640941 41 CACCAGCCTGGCCTTGCTGCCCACTAAACGCCACCTCCTGC CACCAGTCTGGCCTTGCTGCCCACTAAACGCCACCTCCTGC < 41bp 1 0.0699012692530779 1 0.0526534020900726 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR81 ENSG00000167716 CDS Human protein_coding chr17:1640921 chr17:1640907 synonymous SNV . 0 7 hm5C_associated_SNPs_42842 0 0 0 0 0 Endoplasmic reticulum 1 0.50023171059372 1 0.99953657881256 hm5C_site_41881 DeepMRMD:1;iRNA_m5C:0.99953657881256 41882 chr1 32626293 32626293 1 + T C UCEC 32626288 + 32626268 32626308 41 ACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACGTGA ACGTCTTGAACTGTTCCATCCTTAACCCTTTGTTAACGTGA < 41bp 1 0.118413912952105 1 0.593871235847473 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32626288 chr1:32626293 synonymous SNV . 0 26 hm5C_associated_SNPs_42843 0 0 1 0 3 Cytosol 1 0.500231643915089 0.812257528305054 0.999536712169821 hm5C_site_41882 DeepMRMD:0.812257528305054;iRNA_m5C:0.999536712169821 41883 chr17 48696112 48696112 1 + C T UCEC 48696108 + 48696088 48696128 41 TTCGTGCTGACGGCCCAGTTCGTGCTAGTCAACGTGGTGAT TTCGTGCTGACGGCCCAGTTCGTGTTAGTCAACGTGGTGAT < 41bp 1 0.579215566737522 1 0.107696533203125 experiment 0.841568866524955 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48696108 chr17:48696112 synonymous SNV . 0 25 hm5C_associated_SNPs_42844 0 0 1 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41883 DeepMRMD:1;iRNA_m5C:0.999536712157815 41884 chr2 46609726 46609726 1 + A G UCEC 46609709 + 46609689 46609729 41 GCCACCCAGTACCAGGACTACAGCCTGTCGTCAGCCCACAA GCCACCCAGTACCAGGACTACAGCCTGTCGTCAGCCCGCAA < 41bp 1 0.384992583837867 1 0.110350042581558 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46609709 chr2:46609726 nonsynonymous SNV 0.871 0 38 hm5C_associated_SNPs_42845 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41884 DeepMRMD:1;iRNA_m5C:0.999536712157815 41885 chr18 12658591 12658591 1 + T C UCEC 12658585 + 12658565 12658605 41 TTCCCTAGGCGCTGGATCGCCGAAGGTCTGGTTGAAAACTT TTCCCTAGGCGCTGGATCGCCGAAGGCCTGGTTGAAAACTT < 41bp 1 0.603693141601628 1 0.705003082752228 experiment 0.792613716796745 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PSMG2;SPIRE1 ENSG00000215527 CDS Human other chr18:12658585 chr18:12658591 synonymous SNV . 0 27 hm5C_associated_SNPs_42846 0 0 0 0 1 unknown 1 0.500231643920967 0.589993834495544 0.999536712158066 hm5C_site_41885 DeepMRMD:0.589993834495544;iRNA_m5C:0.999536712158066 41886 chr7 103008446 103008446 1 + T C UCEC 103008447 + 103008427 103008467 41 TTGGAAGCTGTAAATAAGGTCATTAAGTCTTATGCCAAATT TTGGAAGCTGTAAATAAGGCCATTAAGTCTTATGCCAAATT < 41bp 1 0.14019435641363 1 0.011517345905304 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103008447 chr7:103008446 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_42847 0 0 1 0 0 Ribosome 1 0.50023198329744 1 0.999536033405121 hm5C_site_41886 DeepMRMD:1;iRNA_m5C:0.999536033405121 41887 chr10 43292433 43292433 1 + C T UCEC 43292423 + 43292403 43292443 41 AAAGCAGCTCTCCCCACTTTCGATTCTGGGCATTGCACAGC AAAGCAGCTCTCCCCACTTTCGATTCTGGGTATTGCACAGC < 41bp 1 0.200604477227176 1 0.14551317691803 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BMS1 ENSG00000165733 CDS Human protein_coding chr10:43292423 chr10:43292433 nonsynonymous SNV 0.016 1 31 hm5C_associated_SNPs_42848 0 0 1 0 0 chromatin 1 0.500234104494069 1 0.999531791011861 hm5C_site_41887 DeepMRMD:1;iRNA_m5C:0.999531791011861 41888 chr14 50247447 50247447 1 + A G UCEC 50247443 + 50247423 50247463 41 GATGCCTGGACTTACTGCATCAGTAAAAATGAATGGATACA GATGCCTGGACTTACTGCATCAGTGAAAATGAATGGATACA < 41bp 1 0.18573091686936 1 0.232321232557297 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KLHDC2 ENSG00000165516 CDS Human protein_coding chr14:50247443 chr14:50247447 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_42849 0 0 1 0 2 Cytosol 1 0.500231614544805 1 0.99953677091039 hm5C_site_41888 DeepMRMD:1;iRNA_m5C:0.99953677091039 41889 chr20 44522631 44522631 1 + T C UCEC 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCTTCGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.139723926052388 1 0.93926477432251 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522631 nonsynonymous SNV 0.975 5 9 hm5C_associated_SNPs_42850 0 0 1 1 2 Ribosome 1 0.500231647654511 0.12147045135498 0.999536704690979 hm5C_site_41889 DeepMRMD:0.12147045135498;iRNA_m5C:0.999536704690979 41890 chr2 27448062 27448062 1 + A G UCEC 27448047 + 27448027 27448067 41 CGAGGATCGACGGGCCTTTGCTGCCAGAATGGCAGAGATCG CGAGGATCGACGGGCCTTTGCTGCCAGAATGGCAGGGATCG < 41bp 1 0.355657465873748 1 0.0297842025756836 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448047 chr2:27448062 nonsynonymous SNV 0.994 3 36 hm5C_associated_SNPs_42851 0 0 1 0 1 Exosome 1 0.500231644141946 1 0.999536711716108 hm5C_site_41890 DeepMRMD:1;iRNA_m5C:0.999536711716108 41891 chr8 142178444 142178444 1 + A G UCEC 142178447 + 142178427 142178467 41 AGGCGCCGGAGCTGATGAGGCTCATCAGCGAGATCCTGGAC AGGCGCCGGAGCTGATGGGGCTCATCAGCGAGATCCTGGAC < 41bp 1 0.31147481903946 1 0.143583655357361 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control DENND3 ENSG00000105339 CDS Human protein_coding chr8:142178447 chr8:142178444 nonsynonymous SNV 0.045 4 18 hm5C_associated_SNPs_42852 0 0 0 0 0 Nucleus 1 0.500231644049436 1 0.999536711901128 hm5C_site_41891 DeepMRMD:1;iRNA_m5C:0.999536711901128 41892 chr12 94072717 94072717 1 + T C UCEC 94072701 + 94072681 94072721 41 TCAATGCTCAAACCACAGGCCTCCGGAAAACAATGCTCCTG TCAATGCTCAAACCACAGGCCTCCGGAAAACAATGCCCCTG < 41bp 1 0.547848166988047 1 0.750274896621704 experiment 0.904303666023906 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRADD ENSG00000169372 CDS Human protein_coding chr12:94072701 chr12:94072717 nonsynonymous SNV 0.988 3 37 hm5C_associated_SNPs_42853 0 0 0 0 0 Ribosome 1 0.500231643895193 0.499450206756592 0.999536712209614 hm5C_site_41892 DeepMRMD:0.499450206756592;iRNA_m5C:0.999536712209614 41893 chr12 94072717 94072717 1 + T C UCEC 94072703 + 94072683 94072723 41 AATGCTCAAACCACAGGCCTCCGGAAAACAATGCTCCTGCT AATGCTCAAACCACAGGCCTCCGGAAAACAATGCCCCTGCT < 41bp 1 0.653923537411117 1 0.685776233673096 experiment 0.692152925177766 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRADD ENSG00000169372 CDS Human protein_coding chr12:94072703 chr12:94072717 nonsynonymous SNV 0.988 3 35 hm5C_associated_SNPs_42854 0 0 0 0 0 Ribosome 1 0.500231643920108 0.628447532653808 0.999536712159785 hm5C_site_41893 DeepMRMD:0.628447532653808;iRNA_m5C:0.999536712159785 41894 chr19 50912090 50912090 1 + G A UCEC 50912092 + 50912072 50912112 41 CTTCTCCTCGCTGTACCCGTCCATCATGATGGCCCACAACC CTTCTCCTCGCTGTACCCATCCATCATGATGGCCCACAACC < 41bp 1 0.030931230013118 1 0.0879022181034088 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912092 chr19:50912090 synonymous SNV . 0 19 hm5C_associated_SNPs_42855 1 0 1 0 2 Nucleus 1 0.500232384810326 1 0.999535230379348 hm5C_site_41894 DeepMRMD:1;iRNA_m5C:0.999535230379348 not specified not specified 41895 chrX 73044122 73044122 1 + A G UCEC 73044128 - 73044108 73044148 41 AAGTAGGAAAATTTGAATAACAATGATTATCTTTTGAATAC AAGTAGGAAAATTTGAATAACAATGACTATCTTTTGAATAC < 41bp 1 0.0827411884567328 1 0.0772877335548401 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044128 chrX:73044122 . . 0 27 hm5C_associated_SNPs_42856 0 0 1 0 0 unknown 1 0.500231643510343 1 0.999536712979314 hm5C_site_41895 DeepMRMD:1;iRNA_m5C:0.999536712979314 41896 chr11 44129529 44129529 1 + G A UCEC 44129509 + 44129489 44129529 41 CCATCCCAGAGCGGGGGGATCTCAGTTGCAGAATGCACACG CCATCCCAGAGCGGGGGGATCTCAGTTGCAGAATGCACACA < 41bp 1 0.686040007548806 1 0.533803224563599 experiment 0.627919984902389 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129509 chr11:44129529 synonymous SNV . 0 41 hm5C_associated_SNPs_42857 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.932393550872802 0.999536712157815 hm5C_site_41896 DeepMRMD:0.932393550872802;iRNA_m5C:0.999536712157815 41897 chr3 49742457 49742457 1 + T G UCEC 49742448 + 49742428 49742468 41 GGCCCTGGCTGTTGGGGGGCCACTGCCCCTGCCCCGGCCCG GGCCCTGGCTGTTGGGGGGCCACTGCCCCGGCCCCGGCCCG < 41bp 1 0.421870222073821 1 0.664554595947266 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742448 chr3:49742457 nonsynonymous SNV 0.993 3 30 hm5C_associated_SNPs_42858 0 0 1 0 1 Nucleus 1 0.500231643954178 0.670890808105468 0.999536712091645 hm5C_site_41897 DeepMRMD:0.670890808105468;iRNA_m5C:0.999536712091645 41898 chr11 110333151 110333151 1 + G A UCEC 110333167 + 110333147 110333187 41 AGTGGCTGATGCCAGACAATCCATTGATGTGGGCAAGACCT AGTGACTGATGCCAGACAATCCATTGATGTGGGCAAGACCT < 41bp 1 0.174648132536257 1 0.145657658576965 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333167 chr11:110333151 nonsynonymous SNV 0.662 1 5 hm5C_associated_SNPs_42859 0 0 0 0 1 Cytosol 1 0.500232029103221 1 0.999535941793559 hm5C_site_41898 DeepMRMD:1;iRNA_m5C:0.999535941793559 41899 chr19 7987402 7987402 1 + T C UCEC 7987382 + 7987362 7987402 41 CTTCCAGAGGAGCTGCCACTCCTGCCCTGCACAGCCCTGGT CTTCCAGAGGAGCTGCCACTCCTGCCCTGCACAGCCCTGGC < 41bp 1 0.223056547521674 1 0.398325085639954 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7987382 chr19:7987402 nonsynonymous SNV 0.005 0 41 hm5C_associated_SNPs_42860 0 0 1 0 0 Ribosome 1 0.500231120771985 1 0.999537758456031 hm5C_site_41899 DeepMRMD:1;iRNA_m5C:0.999537758456031 41900 chr11 71941228 71941228 1 + A G UCEC 71941211 + 71941191 71941231 41 CCTGACCAAGATTGGGAAGTCACAGAAGTTCACGCTGAGCG CCTGACCAAGATTGGGAAGTCACAGAAGTTCACGCTGGGCG < 41bp 1 0.478471107975137 1 0.44840008020401 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71941211 chr11:71941228 nonsynonymous SNV 0.978 3 38 hm5C_associated_SNPs_42861 0 0 1 0 2 Cytosol 1 0.500231631450984 1 0.999536737098031 hm5C_site_41900 DeepMRMD:1;iRNA_m5C:0.999536737098031 41901 chr10 112361858 112361858 1 + G C UCEC 112361869 + 112361849 112361889 41 GTTAGATAGGGGTTACAAATCAATCATGGAACTGATGAATG GTTAGATAGCGGTTACAAATCAATCATGGAACTGATGAATG < 41bp 1 0.276609821509507 1 0.0940138101577759 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112361869 chr10:112361858 nonsynonymous SNV 0.960 1 10 hm5C_associated_SNPs_42862 0 0 1 0 1 Ribosome 1 0.500231643920581 1 0.999536712158839 hm5C_site_41901 DeepMRMD:1;iRNA_m5C:0.999536712158839 41902 chr2 204082001 204082001 1 + A C UCEC 204082013 + 204081993 204082033 41 TTCTCGAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA TTCTCGAACATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA < 41bp 1 0.232996569824251 1 0.373231410980225 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204082013 chr2:204082001 nonsynonymous SNV 0.999 3 9 hm5C_associated_SNPs_42863 0 0 1 0 1 chromatin 1 0.500231643921125 1 0.99953671215775 hm5C_site_41902 DeepMRMD:1;iRNA_m5C:0.99953671215775 41903 chr3 150289805 150289805 1 + T C UCEC 150289790 + 150289770 150289810 41 AGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATG AGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGCATATG < 41bp 1 0.62291891092463 1 0.159569084644318 experiment 0.754162178150739 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EIF2A ENSG00000144895 CDS Human protein_coding chr3:150289790 chr3:150289805 nonsynonymous SNV 0.996 4 36 hm5C_associated_SNPs_42864 0 0 1 0 1 Cytosol 1 0.500261875825638 1 0.999476248348724 hm5C_site_41903 DeepMRMD:1;iRNA_m5C:0.999476248348724 41904 chr1 43917092 43917092 1 + T C UCEC 43917100 - 43917080 43917120 41 GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCGAGG GGCTACAAAGGCTTCGTGGGCTGTGAGTGTCAGCCTCGAGG < 41bp 1 0.294919507622542 1 0.0563547313213348 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HYI ENSG00000178922 CDS Human protein_coding chr1:43917100 chr1:43917092 nonsynonymous SNV 0.970 3 29 hm5C_associated_SNPs_42865 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41904 DeepMRMD:1;iRNA_m5C:0.999536712157815 41905 chr1 110456953 110456953 1 + T C UCEC 110456962 + 110456942 110456982 41 AGGTGTCGGAGTACTGTAGCCACATGATTGGGAGTGGACAC AGGTGTCGGAGCACTGTAGCCACATGATTGGGAGTGGACAC < 41bp 1 0.561716434058714 1 0.729156792163849 experiment 0.876567131882571 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110456962 chr1:110456953 nonsynonymous SNV 0.988 0 12 hm5C_associated_SNPs_42866 0 0 1 0 2 chromatin 1 0.500230780594108 0.541686415672302 0.999538438811785 hm5C_site_41905 DeepMRMD:0.541686415672302;iRNA_m5C:0.999538438811785 41906 chr22 19707361 19707361 1 + C T UCEC 19707377 + 19707357 19707397 41 GGTCCACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA GGTCTACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA < 41bp 1 0.255649407945364 1 0.136840164661407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707377 chr22:19707361 nonsynonymous SNV 0.999 2 5 hm5C_associated_SNPs_42867 0 0 1 1 1 chromatin 1 0.500227364804483 1 0.999545270391034 hm5C_site_41906 DeepMRMD:1;iRNA_m5C:0.999545270391034 Squamous cell lung carcinoma 41907 chr1 42925463 42925463 1 + T C UCEC 42925451 + 42925431 42925471 41 CTAATATCCTTGAGTCACGACAGTCCTTTGTGTTTATTGTA CTAATATCCTTGAGTCACGACAGTCCTTTGTGCTTATTGTA < 41bp 1 0.0666566424810627 1 0.119754314422607 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPCS ENSG00000127125 CDS Human protein_coding chr1:42925451 chr1:42925463 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_42868 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_41907 DeepMRMD:1;iRNA_m5C:0.999536712157814 41908 chr10 75542935 75542935 1 + A G UCEC 75542932 + 75542912 75542952 41 ACAGAGGTTTCCTAACAAACCTTACCTCAGCTGAAAATGGA ACAGAGGTTTCCTAACAAACCTTGCCTCAGCTGAAAATGGA < 41bp 1 0.50139017521706 1 0.024468332529068 experiment 0.99721964956588 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHCHD1 ENSG00000172586 CDS Human protein_coding chr10:75542932 chr10:75542935 nonsynonymous SNV 0.378 1 24 hm5C_associated_SNPs_42869 0 0 1 0 0 Ribosome 1 0.500231643193247 1 0.999536713613506 hm5C_site_41908 DeepMRMD:1;iRNA_m5C:0.999536713613506 41909 chr1 114440562 114440562 1 + A G UCEC 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGCGGTGCAGACTTTCCGAGACCTGGTT < 41bp 1 0.404307629682268 1 0.196389585733414 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440562 nonsynonymous SNV 0.973 4 16 hm5C_associated_SNPs_42870 0 0 1 0 1 chromatin 1 0.500231643919856 1 0.999536712160287 hm5C_site_41909 DeepMRMD:1;iRNA_m5C:0.999536712160287 41910 chr2 220505241 220505241 1 + T A UCEC 220505231 + 220505211 220505251 41 ATCTTCCTGTACATGGGGGTCACGTCCCTGTCTGGTATCCA ATCTTCCTGTACATGGGGGTCACGTCCCTGACTGGTATCCA < 41bp 1 0.305909998874699 1 0.0924261510372162 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505231 chr2:220505241 nonsynonymous SNV 0.993 1 31 hm5C_associated_SNPs_42871 0 0 0 0 2 Cytosol 1 0.500231640050363 1 0.999536719899273 hm5C_site_41910 DeepMRMD:1;iRNA_m5C:0.999536719899273 41911 chr19 59059452 59059452 1 + A T UCEC 59059447 + 59059427 59059467 41 CCTGGAGCGGCAGCACTGGACCATGACCAAGATCCAGAAGC CCTGGAGCGGCAGCACTGGACCATGTCCAAGATCCAGAAGC < 41bp 1 0.233589118236785 1 0.0430557131767273 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59059447 chr19:59059452 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_42872 0 0 1 0 2 Cytosol 1 0.500231643164578 1 0.999536713670845 hm5C_site_41911 DeepMRMD:1;iRNA_m5C:0.999536713670845 41912 chr19 59059452 59059452 1 + A T UCEC 59059448 + 59059428 59059468 41 CTGGAGCGGCAGCACTGGACCATGACCAAGATCCAGAAGCA CTGGAGCGGCAGCACTGGACCATGTCCAAGATCCAGAAGCA < 41bp 1 0.297813037403453 1 0.12371301651001 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59059448 chr19:59059452 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_42873 0 0 1 0 2 Cytosol 1 0.500231643919475 1 0.999536712161051 hm5C_site_41912 DeepMRMD:1;iRNA_m5C:0.999536712161051 Mean corpuscular hemoglobin 41913 chr3 180666564 180666564 1 + A G UCEC 180666572 + 180666552 180666592 41 GGAGCATGCAGAATTTTTTACCATCCAGAAACAACACAGCT GGAGCATGCAGAGTTTTTTACCATCCAGAAACAACACAGCT < 41bp 1 0.0370317938234014 1 0.171768963336945 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180666572 chr3:180666564 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_42874 0 0 0 0 2 Exosome 1 0.500231643921361 1 0.999536712157278 hm5C_site_41913 DeepMRMD:1;iRNA_m5C:0.999536712157278 41914 chr19 54942075 54942075 1 + T C UCEC 54942079 + 54942059 54942099 41 TGTGCCTCAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC TGTGCCTCAGTTCCCTCCAGCGCAGGTCGGTGGGTGGGCGC < 41bp 1 0.659537707201203 1 0.36348432302475 experiment 0.680924585597594 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942079 chr19:54942075 nonsynonymous SNV 0.450 1 17 hm5C_associated_SNPs_42875 0 0 0 0 2 cytosol 1 0.500231641900469 1 0.999536716199062 hm5C_site_41914 DeepMRMD:1;iRNA_m5C:0.999536716199062 41915 chr2 201436919 201436919 1 + A G UCEC 201436921 + 201436901 201436941 41 AGCTTAGAAAGAAAGTAAACCGGAAGACAGAAATAATTTCT AGCTTAGAAAGAAAGTAAGCCGGAAGACAGAAATAATTTCT < 41bp 1 0.655636474799541 1 0.547702252864838 experiment 0.688727050400919 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SGO2 ENSG00000163535 CDS Human protein_coding chr2:201436921 chr2:201436919 nonsynonymous SNV 0.995 1 19 hm5C_associated_SNPs_42876 0 0 1 0 0 cytosol 1 0.5002316439221 0.904595494270324 0.9995367121558 hm5C_site_41915 DeepMRMD:0.904595494270324;iRNA_m5C:0.9995367121558 41916 chr2 152273372 152273372 1 + C T UCEC 152273359 + 152273339 152273379 41 TCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGC TCATTAGAAATACTGTTTAACAAAGGAGAGACGTATTCTGC < 41bp 1 0.285412403324199 1 0.494898647069931 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152273359 chr2:152273372 nonsynonymous SNV 0.869 1 34 hm5C_associated_SNPs_42877 0 0 1 0 2 Nucleus 1 0.500231588527071 1 0.999536822945858 hm5C_site_41916 DeepMRMD:1;iRNA_m5C:0.999536822945858 Age at menopause 41917 chr15 42105221 42105221 1 + T C UCEC 42105224 + 42105204 42105244 41 GGAAAAAAGGCGGACAGTACCTTCTGCATCACGTCCTCAGG GGAAAAAAGGCGGACAGCACCTTCTGCATCACGTCCTCAGG < 41bp 1 0.217396200194653 1 0.113348782062531 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42105224 chr15:42105221 synonymous SNV . 0 18 hm5C_associated_SNPs_42880 0 0 0 0 0 Endoplasmic reticulum 1 0.500231642599081 1 0.999536714801837 hm5C_site_41917 DeepMRMD:1;iRNA_m5C:0.999536714801837 41918 chr12 95877001 95877001 1 + C T UCEC 95877015 + 95876995 95877035 41 AGATGGCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA AGATGGTGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAA < 41bp 1 0.332176080976245 1 0.312281757593155 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877015 chr12:95877001 synonymous SNV . 0 7 hm5C_associated_SNPs_42881 0 0 1 1 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41918 DeepMRMD:1;iRNA_m5C:0.999536712157815 41919 chr12 109604766 109604766 1 + A G UCEC 109604784 + 109604764 109604804 41 TCACACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG TCGCACGCTTTGGGGGGGATCGGGTCATCGAGAAGGTACAG < 41bp 1 0.539434989391666 1 0.738179445266724 experiment 0.921130021216668 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109604784 chr12:109604766 nonsynonymous SNV 0.975 2 3 hm5C_associated_SNPs_42882 0 0 1 0 1 Nucleus 1 0.500231643921093 0.523641109466552 0.999536712157815 hm5C_site_41919 DeepMRMD:0.523641109466552;iRNA_m5C:0.999536712157815 41920 chr19 54969675 54969675 1 + G A UCEC 54969680 + 54969660 54969700 41 GATCGGGAGCGCAAGGTCGCCCTCAAGGCCATGATCAAAAC GATCGGGAGCGCAAGATCGCCCTCAAGGCCATGATCAAAAC < 41bp 1 0.127146863038536 1 0.16665518283844 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54969680 chr19:54969675 nonsynonymous SNV 0.997 0 16 hm5C_associated_SNPs_42883 0 0 1 0 1 chromatin 1 0.500229985052842 1 0.999540029894315 hm5C_site_41920 DeepMRMD:1;iRNA_m5C:0.999540029894315 41921 chr16 88098880 88098880 1 + A G UCEC 88098888 + 88098868 88098908 41 TCCAGCTTCTAGAGGCCACCCGCATCCCCTGCCTCCTGGCC TCCAGCTTCTAGGGGCCACCCGCATCCCCTGCCTCCTGGCC < 41bp 1 0.303780228746504 1 0.216259509325027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BANP ENSG00000172530 CDS Human protein_coding chr16:88098888 chr16:88098880 nonsynonymous SNV 0.913 0 13 hm5C_associated_SNPs_42884 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41921 DeepMRMD:1;iRNA_m5C:0.999536712157815 41922 chr22 30416165 30416165 1 + A G UCEC 30416167 + 30416147 30416187 41 CCCTTTTGAGACCAGAGGACCAAACGTGGACAGTTCTACAG CCCTTTTGAGACCAGAGGGCCAAACGTGGACAGTTCTACAG < 41bp 1 0.109339053689575 1 0.216153085231781 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30416167 chr22:30416165 synonymous SNV . 0 19 hm5C_associated_SNPs_42886 0 0 1 0 0 Ribosome 1 0.500231644062799 1 0.999536711874402 hm5C_site_41922 DeepMRMD:1;iRNA_m5C:0.999536711874402 41923 chrX 73045686 73045686 1 + C T UCEC 73045684 - 73045664 73045704 41 TGGGAAGTTGATTTAAATGACTGATAATGTGTATGAAAGCA TGGGAAGTTGATTTAAATAACTGATAATGTGTATGAAAGCA < 41bp 1 0.0776352859673745 1 0.088361918926239 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045684 chrX:73045686 . . 0 19 hm5C_associated_SNPs_42887 0 0 1 3 0 unknown 1 0.500235543663495 1 0.999528912673009 hm5C_site_41923 DeepMRMD:1;iRNA_m5C:0.999528912673009 41924 chr6 145149981 145149981 1 + A G UCEC 145149979 + 145149959 145149999 41 TCTCACTGATAGCAGCTCCACCACAGGAAGTGTGTAAGTAA TCTCACTGATAGCAGCTCCACCGCAGGAAGTGTGTAAGTAA < 41bp 1 0.187256001790107 1 0.203832030296326 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145149979 chr6:145149981 nonsynonymous SNV 0.946 2 23 hm5C_associated_SNPs_42889 0 0 1 0 2 Nucleus 1 0.50023217354689 1 0.99953565290622 hm5C_site_41924 DeepMRMD:1;iRNA_m5C:0.99953565290622 41925 chr22 32881154 32881154 1 + A G UCEC 32881149 + 32881129 32881169 41 TCCTCTCTGCGAGGGCAGCTCCGCTACTCTCACCTGTGTGC TCCTCTCTGCGAGGGCAGCTCCGCTGCTCTCACCTGTGTGC < 41bp 1 0.547775651399593 1 0.13800510764122 experiment 0.904448697200814 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881149 chr22:32881154 nonsynonymous SNV 0.148 0 26 hm5C_associated_SNPs_42892 1 0 1 0 2 chromatin 1 0.50023164392109 1 0.99953671215782 hm5C_site_41925 DeepMRMD:1;iRNA_m5C:0.99953671215782 Parkinson Disease, Recessive Parkinson Disease, Recessive 41926 chr2 233684684 233684684 1 + T C UCEC 233684666 + 233684646 233684686 41 GAAGAGAAGAGGAAGAAAGGCGGAAGCAGGAAGAATTGTTA GAAGAGAAGAGGAAGAAAGGCGGAAGCAGGAAGAATTGCTA < 41bp 1 0.685447301839054 1 0.871447563171387 experiment 0.629105396321892 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233684666 chr2:233684684 synonymous SNV . 0 39 hm5C_associated_SNPs_42893 0 0 1 0 0 Nucleus 1 0.500231643921092 0.257104873657226 0.999536712157815 hm5C_site_41926 DeepMRMD:0.257104873657226;iRNA_m5C:0.999536712157815 41927 chr19 52195866 52195866 1 + G A UCEC 52195882 + 52195862 52195902 41 CCTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGC CCTGACACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGC < 41bp 1 0.278326599921535 1 0.159434080123901 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B ENSG00000207550 ncRNA_exonic Human miRNA chr19:52195882 chr19:52195866 . . 0 5 hm5C_associated_SNPs_42894 0 0 1 0 0 unknown 1 0.50023145407181 1 0.99953709185638 hm5C_site_41927 DeepMRMD:1;iRNA_m5C:0.99953709185638 41928 chr19 52195866 52195866 1 + G A UCEC 52195883 + 52195863 52195903 41 CTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCC CTGACACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCC < 41bp 1 0.41618105189622 1 0.228709310293198 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B ENSG00000207550 ncRNA_exonic Human miRNA chr19:52195883 chr19:52195866 . . 0 4 hm5C_associated_SNPs_42895 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_41928 DeepMRMD:1;iRNA_m5C:0.999536712157815 41929 chr19 52195866 52195866 1 + G A UCEC 52195886 + 52195866 52195906 41 GCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCA ACACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCA < 41bp 1 0.0935660176439919 1 0.0172544419765472 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B ENSG00000207550 ncRNA_exonic Human miRNA chr19:52195886 chr19:52195866 . . 0 1 hm5C_associated_SNPs_42896 0 0 1 0 0 unknown 1 0.500231643891861 1 0.999536712216278 hm5C_site_41929 DeepMRMD:1;iRNA_m5C:0.999536712216278 41930 chr22 39078397 39078397 1 + G A UCEC 39078388 + 39078368 39078408 41 AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAGCCACT AGATGTTTCCGGAGAGGGTCCGGTCCGCGACCGGAGCCACT < 41bp 1 0.344554108256391 1 0.335571259260178 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078388 chr22:39078397 nonsynonymous SNV 0.961 1 30 hm5C_associated_SNPs_42897 0 0 1 0 2 Ribosome 1 0.500231643920846 1 0.999536712158309 hm5C_site_41930 DeepMRMD:1;iRNA_m5C:0.999536712158309 41931 chr2 200824529 200824529 1 + A G UCEC 200824514 + 200824494 200824534 41 AGAAAAGGTTACTTCACTACCTGACAACCATAAAAATGCCC AGAAAAGGTTACTTCACTACCTGACAACCATAAAAGTGCCC < 41bp 1 0.218625588336161 1 0.153344243764877 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824514 chr2:200824529 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_42898 0 0 1 0 2 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_41931 DeepMRMD:1;iRNA_m5C:0.999536712157815 41932 chr5 21497203 21497203 1 + A G UCEC 21497215 + 21497195 21497235 41 TGGAGTTGATTCAGCTGCAGCTGGCCGCCCAGTTTGAGAAC TGGAGTTGGTTCAGCTGCAGCTGGCCGCCCAGTTTGAGAAC < 41bp 1 0.332576666178374 1 0.763272941112518 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21497215 chr5:21497203 . . 0 9 hm5C_associated_SNPs_42899 0 0 1 0 1 unknown 1 0.500208797634988 0.473454117774964 0.999582404730024 hm5C_site_41932 DeepMRMD:0.473454117774964;iRNA_m5C:0.999582404730024 41933 chr16 14978310 14978310 1 + A G UCEC 14978325 + 14978305 14978345 41 TGATCACTTCCTCTGAATACCTTCCTACATTATGGGTAAGT TGATCGCTTCCTCTGAATACCTTCCTACATTATGGGTAAGT < 41bp 1 0.034286146559342 1 0.0270529091358185 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14978325 chr16:14978310 nonsynonymous SNV 0.998 4 6 hm5C_associated_SNPs_42900 0 0 1 0 2 Nucleus 1 0.500231462285731 1 0.999537075428538 hm5C_site_41933 DeepMRMD:1;iRNA_m5C:0.999537075428538 41934 chr16 14978310 14978310 1 + A G UCEC 14978328 + 14978308 14978348 41 TCACTTCCTCTGAATACCTTCCTACATTATGGGTAAGTCCA TCGCTTCCTCTGAATACCTTCCTACATTATGGGTAAGTCCA < 41bp 1 0.00884978982566549 1 0.391550302505493 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14978328 chr16:14978310 nonsynonymous SNV 0.998 4 3 hm5C_associated_SNPs_42901 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_41934 DeepMRMD:1;iRNA_m5C:0.999536712157816 41935 chr19 11105622 11105622 1 + G A UCEC 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ATGCCAACACGGAGCAGGAGCAGAAGAAAGAGAACGAGCGG < 41bp 1 0.627182896981921 1 0.691103219985962 experiment 0.745634206036158 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105622 nonsynonymous SNV 0.995 4 16 hm5C_associated_SNPs_42902 0 0 1 0 1 Nucleus 1 0.500231643921512 0.617793560028076 0.999536712156977 hm5C_site_41935 DeepMRMD:0.617793560028076;iRNA_m5C:0.999536712156977 41936 chr1 228451884 228451884 1 + T C UCEC 228451881 + 228451861 228451901 41 GTGCAGGCTGAGGCGGGGACCAGTGCCACGCTGAGCTGCGA GTGCAGGCTGAGGCGGGGACCAGCGCCACGCTGAGCTGCGA < 41bp 1 0.159122674920681 1 0.860830664634705 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228451881 chr1:228451884 synonymous SNV . 0 24 hm5C_associated_SNPs_42904 0 0 0 0 1 Ribosome 1 0.500231817119708 0.27833867073059 0.999536365760584 hm5C_site_41936 DeepMRMD:0.27833867073059;iRNA_m5C:0.999536365760584 41937 chr18 29116357 29116357 1 + G A UCEC 29116350 + 29116330 29116370 41 GTTTCTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAA GTTTCTCCGTCATTGACAAACCACCTGACATGGCAGAAAAA < 41bp 1 0.106693793925235 1 0.173202782869339 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116350 chr18:29116357 nonsynonymous SNV 0.825 3 28 hm5C_associated_SNPs_42905 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921088 1 0.999536712157825 hm5C_site_41937 DeepMRMD:1;iRNA_m5C:0.999536712157825 41938 chr18 29116357 29116357 1 + G A UCEC 29116354 + 29116334 29116374 41 CTCCGTCATTGACAAACCACCTGGCATGGCAGAAAAATGGA CTCCGTCATTGACAAACCACCTGACATGGCAGAAAAATGGA < 41bp 1 0.231699878071805 1 0.14175420999527 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116354 chr18:29116357 nonsynonymous SNV 0.825 3 24 hm5C_associated_SNPs_42906 0 0 1 0 1 Endoplasmic reticulum 1 0.500231655273407 1 0.999536689453187 hm5C_site_41938 DeepMRMD:1;iRNA_m5C:0.999536689453187 41939 chr18 29116357 29116357 1 + G A UCEC 29116363 + 29116343 29116383 41 TGACAAACCACCTGGCATGGCAGAAAAATGGAAAATAGCAC TGACAAACCACCTGACATGGCAGAAAAATGGAAAATAGCAC < 41bp 1 0.568172152591567 1 0.292733013629913 experiment 0.863655694816866 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DSG2 ENSG00000046604 CDS Human protein_coding chr18:29116363 chr18:29116357 nonsynonymous SNV 0.825 3 15 hm5C_associated_SNPs_42907 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_41939 DeepMRMD:1;iRNA_m5C:0.999536712157815 41940 chr13 76382214 76382214 1 + G A UCEC 76382234 + 76382214 76382254 41 GGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCTG AGAACTACCGTGCCTCCCATCAGTTTCACCCCTGGCCCCTG < 41bp 1 0.246894453394167 1 0.783420085906982 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76382234 chr13:76382214 nonsynonymous SNV 0.948 2 1 hm5C_associated_SNPs_42908 0 0 0 0 0 Cytosol 1 0.500231643921092 0.433159828186036 0.999536712157815 hm5C_site_41940 DeepMRMD:0.433159828186036;iRNA_m5C:0.999536712157815 41941 chr3 97661200 97661200 1 + C T UCEC 97661188 + 97661168 97661208 41 CACCTGGAGCTAAAGTAGCTCTATGGACTGAACATGGGCAA CACCTGGAGCTAAAGTAGCTCTATGGACTGAATATGGGCAA < 41bp 1 0.207544321647576 1 0.114064633846283 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRYBG3 ENSG00000080200 CDS Human protein_coding chr3:97661188 chr3:97661200 nonsynonymous SNV 0.748 3 33 hm5C_associated_SNPs_42910 0 0 1 0 2 Cytosol 1 0.500231643931368 1 0.999536712137264 hm5C_site_41941 DeepMRMD:1;iRNA_m5C:0.999536712137264 41942 chr15 22940741 22940741 1 + T C UCEC 22940756 + 22940736 22940776 41 GCACATCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAG GCACACCCTCCGGCAGCAGCCCTCAGTACAACATCTGCGAG < 41bp 1 0.359420106404733 1 0.381530851125717 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22940756 chr15:22940741 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_42912 0 0 1 0 1 Cytosol 1 0.500281473346567 1 0.999437053306866 hm5C_site_41942 DeepMRMD:1;iRNA_m5C:0.999437053306866 41943 chr5 82834792 82834792 1 + T C UCEC 82834788 + 82834768 82834808 41 CATATCTGACTCAGAAGGACCCAGTAGCACCATGGTCAGCA CATATCTGACTCAGAAGGACCCAGCAGCACCATGGTCAGCA < 41bp 1 0.045448599423381 1 0.132387697696686 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82834788 chr5:82834792 synonymous SNV . 0 25 hm5C_associated_SNPs_42913 0 0 1 0 0 Ribosome 1 0.500231643921074 1 0.999536712157852 hm5C_site_41943 DeepMRMD:1;iRNA_m5C:0.999536712157852 41944 chr10 118306848 118306848 1 + A G UCEC 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGGCTCCCCATGGTCAGGAATTAC < 41bp 1 0.276104659274162 1 0.0420912206172943 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306848 nonsynonymous SNV 0.773 1 20 hm5C_associated_SNPs_42915 0 0 0 0 1 unknown 1 0.500231645220687 1 0.999536709558625 hm5C_site_41944 DeepMRMD:1;iRNA_m5C:0.999536709558625 41945 chr10 118306848 118306848 1 + A G UCEC 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGGCTCCCCATGGTCAGGAATTACGG < 41bp 1 0.606455185390517 1 0.144171953201294 experiment 0.787089629218966 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306848 nonsynonymous SNV 0.773 1 18 hm5C_associated_SNPs_42916 0 0 0 0 1 unknown 1 0.500231444894416 1 0.999537110211168 hm5C_site_41945 DeepMRMD:1;iRNA_m5C:0.999537110211168 41946 chr10 118306848 118306848 1 + A G UCEC 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGGCTCCCCATGGTCAGGAATTACGGAA < 41bp 1 0.282577743225152 1 0.304024934768677 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306848 nonsynonymous SNV 0.773 1 16 hm5C_associated_SNPs_42917 0 0 0 0 1 unknown 1 0.50023164395272 1 0.99953671209456 hm5C_site_41946 DeepMRMD:1;iRNA_m5C:0.99953671209456 41947 chr10 118306848 118306848 1 + A G UCEC 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGGCTCCCCATGGTCAGGAATTACGGAAA < 41bp 1 0.551860651653391 1 0.45896303653717 experiment 0.896278696693217 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306848 nonsynonymous SNV 0.773 1 15 hm5C_associated_SNPs_42918 0 0 0 0 1 unknown 1 0.500231643921091 1 0.999536712157819 hm5C_site_41947 DeepMRMD:1;iRNA_m5C:0.999536712157819 41948 chr1 70700415 70700415 1 + A G UCEC 70700412 + 70700392 70700432 41 CACTGGCTGCTTTGGGGGCTCCTACTCTTGATCCTGCCCTT CACTGGCTGCTTTGGGGGCTCCTGCTCTTGATCCTGCCCTT < 41bp 1 0.427488997431395 1 0.197558969259262 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70700412 chr1:70700415 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_42919 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41948 DeepMRMD:1;iRNA_m5C:0.999536712157815 41949 chr22 41742209 41742209 1 + C T UCEC 41742194 + 41742174 41742214 41 CTGAAGGAGCACCAGGGCATCTTCACCTTCCTCTGCGAGGT CTGAAGGAGCACCAGGGCATCTTCACCTTCCTCTGTGAGGT < 41bp 1 0.290688308388627 1 0.154329657554626 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41742194 chr22:41742209 synonymous SNV . 0 36 hm5C_associated_SNPs_42920 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920407 1 0.999536712159187 hm5C_site_41949 DeepMRMD:1;iRNA_m5C:0.999536712159187 41950 chr20 58519645 58519645 1 + G T UCEC 58519625 + 58519605 58519645 41 GGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTCAGG GGGGGCAAAGCAAGGCCCCCCACTGCCCCTGGGACCTCAGT < 41bp 1 0.314553059692638 1 0.189857333898544 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519625 chr20:58519645 nonsynonymous SNV 0.025 0 41 hm5C_associated_SNPs_42921 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41950 DeepMRMD:1;iRNA_m5C:0.999536712157815 41951 chr7 100204247 100204247 1 + G T UCEC 100204239 + 100204219 100204259 41 TCCGGAGAAAACAGAGGAATCTCCTTCAGCCCCTGGTGAGT TCCGGAGAAAACAGAGGAATCTCCTTCATCCCCTGGTGAGT < 41bp 1 0.33288592280398 1 0.11872586607933 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100204239 chr7:100204247 nonsynonymous SNV 0.001 0 29 hm5C_associated_SNPs_42922 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645874646 1 0.999536708250708 hm5C_site_41951 DeepMRMD:1;iRNA_m5C:0.999536708250708 41952 chr7 55270297 55270297 1 + G A UCEC 55270305 + 55270285 55270325 41 GACAGCATAGACGACACCTTCCTCCCAGTGCCTGGTGAGTG GACAGCATAGACAACACCTTCCTCCCAGTGCCTGGTGAGTG < 41bp 1 0.0441989786480863 1 0.0338515937328339 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55270305 chr7:55270297 nonsynonymous SNV 0.943 2 13 hm5C_associated_SNPs_42923 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_41952 DeepMRMD:1;iRNA_m5C:0.999536712157815 41953 chr9 91041450 91041450 1 + G A UCEC 91041433 + 91041413 91041453 41 ACCCTAGTCCAGCAGCTCCGCTGCTCACTTAAATACAGATG ACCCTAGTCCAGCAGCTCCGCTGCTCACTTAAATACAAATG < 41bp 1 0.455721350230475 1 0.373258322477341 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 UTR5 Human protein_coding chr9:91041433 chr9:91041450 . . 0 38 hm5C_associated_SNPs_42924 0 0 1 0 1 Cytosol 1 0.500231643921488 1 0.999536712157025 hm5C_site_41953 DeepMRMD:1;iRNA_m5C:0.999536712157025 41954 chr7 99956371 99956371 1 + C T UCEC 99956353 + 99956333 99956373 41 CCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTCTC CCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTTTC < 41bp 1 0.0732241739459779 1 0.0205260813236237 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956353 chr7:99956371 synonymous SNV . 0 39 hm5C_associated_SNPs_42925 0 0 0 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41954 DeepMRMD:1;iRNA_m5C:0.999536712157815 41955 chr12 95694213 95694213 1 + G A UCEC 95694232 + 95694212 95694252 41 AGCAGATGGAAGTGGTCTGACCACTGCCCCTCCAACTCCCA AACAGATGGAAGTGGTCTGACCACTGCCCCTCCAACTCCCA < 41bp 1 0.333348836944593 1 0.161350458860397 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VEZT ENSG00000028203 CDS Human protein_coding chr12:95694232 chr12:95694213 nonsynonymous SNV 0.001 0 2 hm5C_associated_SNPs_42926 0 0 1 1 0 Endoplasmic reticulum 1 0.500231643973316 1 0.999536712053367 hm5C_site_41955 DeepMRMD:1;iRNA_m5C:0.999536712053367 41956 chr2 71297694 71297694 1 + A C UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGCTGGACTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.597970913841022 1 0.27280205488205 experiment 0.804058172317956 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297694 nonsynonymous SNV 1.000 0 11 hm5C_associated_SNPs_42927 0 0 1 2 2 chromatin 1 0.500231644045024 1 0.999536711909953 hm5C_site_41956 DeepMRMD:1;iRNA_m5C:0.999536711909953 Red cell distribution width 41957 chr17 38142911 38142911 1 + C A UCEC 38142926 + 38142906 38142946 41 GAAGCCTATCTCCAACTCCTCGTGGTCATCTTCATGATGAA GAAGCATATCTCCAACTCCTCGTGGTCATCTTCATGATGAA < 41bp 1 0.415030859499511 1 0.196974486112595 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38142926 chr17:38142911 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_42928 0 0 1 0 2 Ribosome 1 0.50023171628227 1 0.999536567435459 hm5C_site_41957 DeepMRMD:1;iRNA_m5C:0.999536567435459 41958 chr1 220964953 220964953 1 + G T UCEC 220964933 + 220964913 220964953 41 GCGATGGTGACACCCTGACTCTCAGTGCAGCCTACACAAAG GCGATGGTGACACCCTGACTCTCAGTGCAGCCTACACAAAT < 41bp 1 0.690157095877032 1 0.34901151061058 experiment 0.619685808245935 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964933 chr1:220964953 nonsynonymous SNV 0.994 0 41 hm5C_associated_SNPs_42929 0 0 1 0 1 Ribosome 1 0.500231642140948 1 0.999536715718104 hm5C_site_41958 DeepMRMD:1;iRNA_m5C:0.999536715718104 41959 chr4 169632781 169632781 1 + C T UCEC 169632772 + 169632752 169632792 41 TACGAGTCAATGGGAGAATCCAACAATGACCACTTCCAACA TACGAGTCAATGGGAGAATCCAACAATGATCACTTCCAACA < 41bp 1 0.57985038268784 1 0.148322820663452 experiment 0.84029923462432 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PALLD ENSG00000129116 CDS Human protein_coding chr4:169632772 chr4:169632781 synonymous SNV . 0 30 hm5C_associated_SNPs_42930 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_41959 DeepMRMD:1;iRNA_m5C:0.999536712157815 41960 chrX 12838855 12838855 1 + T C UCEC 12838861 + 12838841 12838881 41 AAATAATGCCGCCTTTGAGGCTGTTGTCGTCACAAACACAA AAATAATGCCGCCTCTGAGGCTGTTGTCGTCACAAACACAA < 41bp 1 0.32427362800053 1 0.109329283237457 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838861 chrX:12838855 nonsynonymous SNV 0.993 1 15 hm5C_associated_SNPs_42931 0 0 1 0 2 Ribosome 1 0.50023164477389 1 0.999536710452221 hm5C_site_41960 DeepMRMD:1;iRNA_m5C:0.999536710452221 41961 chr2 32656077 32656077 1 + G T UCEC 32656070 + 32656050 32656090 41 TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAA TAGAAGTTCAACAAGAACAGCAGCAAATGAGGCATCCTCAA < 41bp 1 0.274143737729467 1 0.374160945415497 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656070 chr2:32656077 nonsynonymous SNV 0.997 5 28 hm5C_associated_SNPs_42932 0 0 1 0 1 Nucleus 1 0.500231643922682 1 0.999536712154636 hm5C_site_41961 DeepMRMD:1;iRNA_m5C:0.999536712154636 41962 chr3 99509760 99509760 1 + G T UCEC 99509758 + 99509738 99509778 41 GCAAGGAGATGCCCCACTTGCAGTATGGCAAAGAGTATCCA GCAAGGAGATGCCCCACTTGCATTATGGCAAAGAGTATCCA < 41bp 1 0.311490425052998 1 0.11531013250351 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99509758 chr3:99509760 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_42934 0 0 1 0 1 Cytosol 1 0.500231726939993 1 0.999536546120015 hm5C_site_41962 DeepMRMD:1;iRNA_m5C:0.999536546120015 41963 chr8 98837320 98837320 1 + G A UCEC 98837312 + 98837292 98837332 41 TTGATTAGCTGTGTTTGGAACTGCTACCGATACATCAATGG TTGATTAGCTGTGTTTGGAACTGCTACCAATACATCAATGG < 41bp 1 0.226957202487686 1 0.103724330663681 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAPTM4B ENSG00000104341 CDS Human protein_coding chr8:98837312 chr8:98837320 nonsynonymous SNV 0.977 4 29 hm5C_associated_SNPs_42935 0 0 1 0 1 Ribosome 1 0.500231643523445 1 0.999536712953111 hm5C_site_41963 DeepMRMD:1;iRNA_m5C:0.999536712953111 41964 chr12 56331267 56331267 1 + C A UCEC 56331284 + 56331264 56331304 41 AGCCTGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT AGCATGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT < 41bp 1 0.224842118067275 1 0.0753671526908875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56331284 chr12:56331267 nonsynonymous SNV 0.945 0 4 hm5C_associated_SNPs_42936 0 0 0 0 3 Cytosol 1 0.500227992025055 1 0.999544015949889 hm5C_site_41964 DeepMRMD:1;iRNA_m5C:0.999544015949889 41965 chr19 41078274 41078274 1 + G T UCEC 41078256 + 41078236 41078276 41 TCCTGCAGGACCCAGGATGGCAGTGAGTTTTTGCTCCAGGC TCCTGCAGGACCCAGGATGGCAGTGAGTTTTTGCTCCATGC < 41bp 1 0.222915405107124 1 0.0481716990470886 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41078256 chr19:41078274 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_42938 0 0 0 0 2 cytosol 1 0.500231643904687 1 0.999536712190627 hm5C_site_41965 DeepMRMD:1;iRNA_m5C:0.999536712190627 41966 chr2 29344266 29344266 1 + G T UCEC 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TAGATGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG < 41bp 1 0.0600604068756172 1 0.0789860486984253 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344266 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_42939 0 0 0 0 0 nucleus 1 0.500231644121145 1 0.999536711757711 hm5C_site_41966 DeepMRMD:1;iRNA_m5C:0.999536711757711 41967 chr19 41709423 41709423 1 + C T UCEC 41709417 + 41709397 41709437 41 AGGCACCAAGCCTAGGGGACCGTACCCGCCTCCCTTACACC AGGCACCAAGCCTAGGGGACCGTACCTGCCTCCCTTACACC < 41bp 1 0.0678877215694417 1 0.0471005737781525 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41709417 chr19:41709423 nonsynonymous SNV 0.513 2 27 hm5C_associated_SNPs_42940 0 0 0 0 0 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_41967 DeepMRMD:1;iRNA_m5C:0.999536712157813 41968 chr11 75279984 75279984 1 + G A UCEC 75279988 + 75279968 75280008 41 TCCGCTCCTCTCCCAGGCCTCTACAACTACTACGACGACGA TCCGCTCCTCTCCCAGACCTCTACAACTACTACGACGACGA < 41bp 1 0.597900610413911 1 0.677691340446472 experiment 0.804198779172177 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279988 chr11:75279984 nonsynonymous SNV 0.920 4 17 hm5C_associated_SNPs_42941 0 0 1 0 1 Ribosome 1 0.500231643921095 0.644617319107056 0.99953671215781 hm5C_site_41968 DeepMRMD:0.644617319107056;iRNA_m5C:0.99953671215781 Heel bone mineral density 41969 chr1 36645662 36645662 1 + G T UCEC 36645659 + 36645639 36645679 41 AAGCTGTGGTGCAGTCCCCGCAGGTCACAGGTAGATCTCCT AAGCTGTGGTGCAGTCCCCGCAGTTCACAGGTAGATCTCCT < 41bp 1 0.107825642548726 1 0.790398716926575 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36645659 chr1:36645662 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_42942 0 0 0 0 1 Ribosome 1 0.500231643925698 0.41920256614685 0.999536712148604 hm5C_site_41969 DeepMRMD:0.41920256614685;iRNA_m5C:0.999536712148604 41970 chr2 71297701 71297701 1 + G A UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGGACTAAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.627389898650434 1 0.273150742053986 experiment 0.745220202699132 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297701 synonymous SNV . 0 18 hm5C_associated_SNPs_42943 0 0 1 2 2 chromatin 1 0.500231643921214 1 0.999536712157572 hm5C_site_41970 DeepMRMD:1;iRNA_m5C:0.999536712157572 41971 chr13 76430722 76430722 1 + C T UCEC 76430734 + 76430714 76430754 41 TACTGCAACGACTGCTATCTCAGATTCAAATGTAAGAGAGC TACTGCAATGACTGCTATCTCAGATTCAAATGTAAGAGAGC < 41bp 1 0.327781586369823 1 0.72634756565094 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76430734 chr13:76430722 nonsynonymous SNV 0.989 0 9 hm5C_associated_SNPs_42944 0 0 1 0 1 Cytosol 1 0.500231643898527 0.54730486869812 0.999536712202946 hm5C_site_41971 DeepMRMD:0.54730486869812;iRNA_m5C:0.999536712202946 41972 chr12 53663766 53663766 1 + T C UCEC 53663747 + 53663727 53663767 41 GGGCATTGTATGAGAGCTGCCAGTTCTTCCTTTCAGGCCTG GGGCATTGTATGAGAGCTGCCAGTTCTTCCTTTCAGGCCCG < 41bp 1 0.185264246156727 1 0.330729782581329 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663747 chr12:53663766 nonsynonymous SNV 0.994 4 40 hm5C_associated_SNPs_42945 0 0 1 0 0 Nucleus 1 0.500232183953316 1 0.999535632093367 hm5C_site_41972 DeepMRMD:1;iRNA_m5C:0.999535632093367 41973 chr4 123145740 123145740 1 + G A UCEC 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAAAAGG < 41bp 1 0.403037618529793 1 0.193276137113571 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145740 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_42947 0 0 1 0 3 Nucleus 1 0.500232002578288 1 0.999535994843423 hm5C_site_41973 DeepMRMD:1;iRNA_m5C:0.999535994843423 41974 chr6 31593321 31593321 1 + C T UCEC 31593332 + 31593312 31593352 41 GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC GTCATGATCTCCGGGGTGGGCTACAGCCTTCAGGCCCACCC < 41bp 1 0.664750008499754 1 0.473716467618942 experiment 0.670499983000491 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593332 chr6:31593321 nonsynonymous SNV 0.995 3 10 hm5C_associated_SNPs_42948 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41974 DeepMRMD:1;iRNA_m5C:0.999536712157815 41975 chr5 153709235 153709235 1 + C T UCEC 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTGTGTTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA < 41bp 1 0.679524714524936 1 0.92730724811554 experiment 0.640950570950129 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709235 nonsynonymous SNV 0.973 2 8 hm5C_associated_SNPs_42949 0 0 0 0 1 Ribosome 1 0.500222726597679 0.14538550376892 0.999554546804642 hm5C_site_41975 DeepMRMD:0.14538550376892;iRNA_m5C:0.999554546804642 41976 chr19 1279098 1279098 1 + T C UCEC 1279105 + 1279085 1279125 41 TGACTGTGACTTGTGCCTCTCTCCTGCCCCCGTGGGGACAT TGACTGTGACTTGCGCCTCTCTCCTGCCCCCGTGGGGACAT < 41bp 1 0.687755592604298 1 0.20723769068718 experiment 0.624488814791403 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C19orf24 ENSG00000228300 CDS Human protein_coding chr19:1279105 chr19:1279098 nonsynonymous SNV 0.015 1 14 hm5C_associated_SNPs_42950 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41976 DeepMRMD:1;iRNA_m5C:0.999536712157815 41977 chr17 48551156 48551156 1 + C T UCEC 48551147 + 48551127 48551167 41 AGGACTTCTTTCACACACACCCGAAGGTGCAGGAAGTGCAG AGGACTTCTTTCACACACACCCGAAGGTGTAGGAAGTGCAG < 41bp 1 0.362623186197135 1 0.113216400146484 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48551147 chr17:48551156 stopgain 1.000 0 30 hm5C_associated_SNPs_42951 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157817 hm5C_site_41977 DeepMRMD:1;iRNA_m5C:0.999536712157817 41978 chrX 133511660 133511660 1 + G A UCEC 133511658 + 133511638 133511678 41 TTTAAAAATCATGTCAAGCTCAGTTGAACAGAAAAAAGGGC TTTAAAAATCATGTCAAGCTCAATTGAACAGAAAAAAGGGC < 41bp 1 0.158304630136289 1 0.160099238157272 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133511658 chrX:133511660 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_42952 0 0 1 0 1 Ribosome 1 0.500231643919478 1 0.999536712161043 hm5C_site_41978 DeepMRMD:1;iRNA_m5C:0.999536712161043 41979 chr16 28950004 28950004 1 + G T UCEC 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTCCCATTCCTATGAGGATATGA < 41bp 1 0.0432335231645741 1 0.028704822063446 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950004 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_42953 0 0 0 0 3 exosome 1 0.500231644457628 1 0.999536711084744 hm5C_site_41979 DeepMRMD:1;iRNA_m5C:0.999536711084744 41980 chr16 28950004 28950004 1 + G T UCEC 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTCCCATTCCTATGAGGATATGAG < 41bp 1 0.00918522637330106 1 0.0257252156734467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950004 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_42954 0 0 0 0 3 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41980 DeepMRMD:1;iRNA_m5C:0.999536712157815 Lung cancer 41981 chr16 28950004 28950004 1 + G T UCEC 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTCCCATTCCTATGAGGATATGAGA < 41bp 1 0.0192390517016027 1 0.0414834916591644 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950004 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_42955 0 0 0 0 3 exosome 1 0.500231644281667 1 0.999536711436667 hm5C_site_41981 DeepMRMD:1;iRNA_m5C:0.999536711436667 41982 chr5 149406363 149406363 1 + G A UCEC 149406376 + 149406356 149406396 41 CATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG CATGAGAACAATTTTGCCAGCCCCAGTTAACGTGGGGCGAG < 41bp 1 0.453697795164261 1 0.124432504177094 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406376 chr5:149406363 nonsynonymous SNV 0.999 3 8 hm5C_associated_SNPs_42956 0 0 1 0 2 Ribosome 1 0.500231624986463 1 0.999536750027074 hm5C_site_41982 DeepMRMD:1;iRNA_m5C:0.999536750027074 41983 chr5 149406363 149406363 1 + G A UCEC 149406377 + 149406357 149406397 41 ATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGG ATGAGAACAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGG < 41bp 1 0.174886697061082 1 0.0779462158679962 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406377 chr5:149406363 nonsynonymous SNV 0.999 3 7 hm5C_associated_SNPs_42957 0 0 1 0 2 Ribosome 1 0.500231643921154 1 0.999536712157693 hm5C_site_41983 DeepMRMD:1;iRNA_m5C:0.999536712157693 41984 chr5 149406363 149406363 1 + G A UCEC 149406378 + 149406358 149406398 41 TGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGC TGAGAACAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGC < 41bp 1 0.13333978792064 1 0.276255935430527 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406378 chr5:149406363 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_42958 0 0 1 0 2 Ribosome 1 0.50023141164571 1 0.999537176708581 hm5C_site_41984 DeepMRMD:1;iRNA_m5C:0.999537176708581 41985 chr5 149406363 149406363 1 + G A UCEC 149406379 + 149406359 149406399 41 GAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGCA GAGAACAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGCA < 41bp 1 0.127607316171142 1 0.425476908683777 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149406379 chr5:149406363 nonsynonymous SNV 0.999 3 5 hm5C_associated_SNPs_42959 0 0 1 0 2 Ribosome 1 0.500231643920976 1 0.999536712158047 hm5C_site_41985 DeepMRMD:1;iRNA_m5C:0.999536712158047 41986 chr7 101891761 101891761 1 + C T UCEC 101891755 + 101891735 101891775 41 GGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGC GGGAGTCAGGGCCAGGCGGGCGCCAGTGACTCACCCTCGGC < 41bp 1 0.693356395494251 1 0.557564914226532 experiment 0.613287209011498 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891755 chr7:101891761 synonymous SNV . 0 27 hm5C_associated_SNPs_42960 0 0 1 0 1 Exosome 1 0.500231643921091 0.884870171546936 0.999536712157817 hm5C_site_41986 DeepMRMD:0.884870171546936;iRNA_m5C:0.999536712157817 41987 chr7 101891761 101891761 1 + C T UCEC 101891757 + 101891737 101891777 41 GAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCC GAGTCAGGGCCAGGCGGGCGCCAGTGACTCACCCTCGGCCC < 41bp 1 0.409599772625869 1 0.377107411623001 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891757 chr7:101891761 synonymous SNV . 0 25 hm5C_associated_SNPs_42961 0 0 1 0 1 Exosome 1 0.500231642430246 1 0.999536715139507 hm5C_site_41987 DeepMRMD:1;iRNA_m5C:0.999536715139507 41988 chr7 101891761 101891761 1 + C T UCEC 101891758 + 101891738 101891778 41 AGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCCG AGTCAGGGCCAGGCGGGCGCCAGTGACTCACCCTCGGCCCG < 41bp 1 0.50210498813852 1 0.591745853424072 experiment 0.995790023722959 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101891758 chr7:101891761 synonymous SNV . 0 24 hm5C_associated_SNPs_42962 0 0 1 0 1 Exosome 1 0.500231643921094 0.816508293151856 0.999536712157812 hm5C_site_41988 DeepMRMD:0.816508293151856;iRNA_m5C:0.999536712157812 41989 chr1 162039990 162039990 1 + A C UCEC 162040009 + 162039989 162040029 41 AACCTTGTGGACGATGGGCACGACCTGCGGATCCCCTTGCA ACCCTTGTGGACGATGGGCACGACCTGCGGATCCCCTTGCA < 41bp 1 0.367088229704225 1 0.468978017568588 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162040009 chr1:162039990 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_42963 0 0 1 0 1 cytosol 1 0.5002316439211 1 0.999536712157799 hm5C_site_41989 DeepMRMD:1;iRNA_m5C:0.999536712157799 41990 chr13 113732714 113732714 1 + C T UCEC 113732702 + 113732682 113732722 41 CGGCGAGGCTCTGAGAACTCCAGCTCCGAGGGCGGTGCGCT CGGCGAGGCTCTGAGAACTCCAGCTCCGAGGGTGGTGCGCT < 41bp 1 0.324492745852953 1 0.303036868572235 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCF2L ENSG00000126217 CDS Human protein_coding chr13:113732702 chr13:113732714 synonymous SNV . 0 33 hm5C_associated_SNPs_42964 0 0 1 0 2 Cytosol 1 0.500231643922839 1 0.999536712154322 hm5C_site_41990 DeepMRMD:1;iRNA_m5C:0.999536712154322 41991 chr1 75214444 75214444 1 + G A UCEC 75214439 + 75214419 75214459 41 TTTTATTTTCTTACAGCATTCCATGGCAATAGATTCTGGTT TTTTATTTTCTTACAGCATTCCATGACAATAGATTCTGGTT < 41bp 1 0.110797422867234 1 0.341788798570633 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TYW3 ENSG00000162623 CDS Human protein_coding chr1:75214439 chr1:75214444 nonsynonymous SNV 0.993 4 26 hm5C_associated_SNPs_42965 0 0 1 0 2 chromatin 1 0.50023141870594 1 0.99953716258812 hm5C_site_41991 DeepMRMD:1;iRNA_m5C:0.99953716258812 41992 chr1 75214444 75214444 1 + G A UCEC 75214440 + 75214420 75214460 41 TTTATTTTCTTACAGCATTCCATGGCAATAGATTCTGGTTT TTTATTTTCTTACAGCATTCCATGACAATAGATTCTGGTTT < 41bp 1 0.412586819727914 1 0.133907645940781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TYW3 ENSG00000162623 CDS Human protein_coding chr1:75214440 chr1:75214444 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_42966 0 0 1 0 2 chromatin 1 0.50023164811429 1 0.99953670377142 hm5C_site_41992 DeepMRMD:1;iRNA_m5C:0.99953670377142 41993 chr10 75830571 75830571 1 + A T UCEC 75830552 + 75830532 75830572 41 TCCTCTCTGGAACATCAGACCTGCTCCTTACCTTCGATGAG TCCTCTCTGGAACATCAGACCTGCTCCTTACCTTCGATGTG < 41bp 1 0.316635524103393 1 0.026380181312561 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75830552 chr10:75830571 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_42967 0 0 1 0 1 Nucleus 1 0.500231644095779 1 0.999536711808442 hm5C_site_41993 DeepMRMD:1;iRNA_m5C:0.999536711808442 41994 chrX 77373633 77373633 1 + A T UCEC 77373646 + 77373626 77373666 41 CTTGGAGAGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG CTTGGAGTGCCCAGAGCGACCCTTCCTGGCCATCCTGGGCG < 41bp 1 0.0737082680129575 1 0.0477201342582703 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373646 chrX:77373633 nonsynonymous SNV 0.995 2 8 hm5C_associated_SNPs_42968 0 0 1 2 2 Ribosome 1 0.500231677883535 1 0.999536644232931 hm5C_site_41994 DeepMRMD:1;iRNA_m5C:0.999536644232931 41995 chr16 28845686 28845686 1 + C A UCEC 28845668 + 28845648 28845688 41 GTGTCCTCATCCCCAGGCACCTCAGATGTATCCATATCCTG GTGTCCTCATCCCCAGGCACCTCAGATGTATCCATATCATG < 41bp 1 0.237769794153093 1 0.0978447198867798 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28845668 chr16:28845686 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_42969 0 0 1 0 2 Cytosol 1 0.500231706971007 1 0.999536586057985 hm5C_site_41995 DeepMRMD:1;iRNA_m5C:0.999536586057985 41996 chr3 50131284 50131284 1 + T A UCEC 50131269 + 50131249 50131289 41 GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCAT GAGAGGGAGAGCAAGACCATCATGCTGCGCGGCCTACCCAT < 41bp 1 0.469317983406844 1 0.236827671527863 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131269 chr3:50131284 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_42970 0 0 1 0 2 Cytosol 1 0.500231643920467 1 0.999536712159066 hm5C_site_41996 DeepMRMD:1;iRNA_m5C:0.999536712159066 41997 chr16 28950005 28950005 1 + T A UCEC 28950000 + 28949980 28950020 41 ATCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGA ATCCCCCGCCCAAGCAGGGTCCCAGACCTATGAGGATATGA < 41bp 1 0.0777632820981057 1 0.0983783900737762 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950000 chr16:28950005 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_42971 0 0 0 0 3 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41997 DeepMRMD:1;iRNA_m5C:0.999536712157815 41998 chr16 28950005 28950005 1 + T A UCEC 28950001 + 28949981 28950021 41 TCCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAG TCCCCCGCCCAAGCAGGGTCCCAGACCTATGAGGATATGAG < 41bp 1 0.14725072798058 1 0.0873808562755585 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950001 chr16:28950005 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_42972 0 0 0 0 3 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41998 DeepMRMD:1;iRNA_m5C:0.999536712157815 41999 chr16 28950005 28950005 1 + T A UCEC 28950002 + 28949982 28950022 41 CCCCCGCCCAAGCAGGGTCCCAGTCCTATGAGGATATGAGA CCCCCGCCCAAGCAGGGTCCCAGACCTATGAGGATATGAGA < 41bp 1 0.137027684441051 1 0.0883345901966095 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CD19 ENSG00000177455 CDS Human protein_coding chr16:28950002 chr16:28950005 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_42973 0 0 0 0 3 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_41999 DeepMRMD:1;iRNA_m5C:0.999536712157815 42000 chr18 9954115 9954115 1 + C A UCEC 9954099 + 9954079 9954119 41 ACATTCGGATAAACCTGGATCAACCTCAACTGCATCCTTCA ACATTCGGATAAACCTGGATCAACCTCAACTGCATCATTCA < 41bp 1 0.231366068333189 1 0.14709135890007 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VAPA ENSG00000101558 CDS Human protein_coding chr18:9954099 chr18:9954115 synonymous SNV . 0 37 hm5C_associated_SNPs_42975 0 0 1 0 1 Ribosome 1 0.500231643921212 1 0.999536712157576 hm5C_site_42000 DeepMRMD:1;iRNA_m5C:0.999536712157576 42001 chr12 95888844 95888844 1 + C T UCEC 95888833 + 95888813 95888853 41 CTCTCAATAATTGTGCTGCCCATTATACTCCCAATGCCGGT CTCTCAATAATTGTGCTGCCCATTATACTCCTAATGCCGGT < 41bp 1 0.32145210351568 1 0.0506909787654877 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95888833 chr12:95888844 synonymous SNV . 0 32 hm5C_associated_SNPs_42976 0 0 1 1 1 Ribosome 1 0.500225142338121 1 0.999549715323759 hm5C_site_42001 DeepMRMD:1;iRNA_m5C:0.999549715323759 42002 chr21 46900044 46900044 1 + G T UCEC 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCTCCAGGGCCCCCATGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0737262142589496 1 0.0499127507209778 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900044 stopgain 0.990 1 17 hm5C_associated_SNPs_42977 0 0 1 0 2 Nucleus 1 0.50023155757949 1 0.999536884841021 hm5C_site_42002 DeepMRMD:1;iRNA_m5C:0.999536884841021 42003 chrX 152914911 152914911 1 + C T UCEC 152914918 + 152914898 152914938 41 ACCAGTGGGGCTGCGGGCATCCTTCCCTGTCCAGATCCTGC ACCAGTGGGGCTGTGGGCATCCTTCCCTGTCCAGATCCTGC < 41bp 1 0.0134673023789463 1 0.0446197092533112 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152914918 chrX:152914911 nonsynonymous SNV 0.869 1 14 hm5C_associated_SNPs_42978 0 0 0 0 0 cytosol 1 0.500232214105177 1 0.999535571789645 hm5C_site_42003 DeepMRMD:1;iRNA_m5C:0.999535571789645 42004 chrX 152914911 152914911 1 + C T UCEC 152914922 + 152914902 152914942 41 GTGGGGCTGCGGGCATCCTTCCCTGTCCAGATCCTGCCCAA GTGGGGCTGTGGGCATCCTTCCCTGTCCAGATCCTGCCCAA < 41bp 1 0.49316156850291 1 0.271367490291595 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152914922 chrX:152914911 nonsynonymous SNV 0.869 1 10 hm5C_associated_SNPs_42979 0 0 0 0 0 cytosol 1 0.500231643921088 1 0.999536712157823 hm5C_site_42004 DeepMRMD:1;iRNA_m5C:0.999536712157823 42005 chr2 217311862 217311862 1 + G A UCEC 217311863 + 217311843 217311883 41 TTTCATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGT TTTCATGCCTTTGGACTTCACTACTGTGATGCCAAACGGGT < 41bp 1 0.474611928353265 1 0.107269793748856 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311863 chr2:217311862 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_42981 0 0 0 2 1 chromatin 1 0.500231643757092 1 0.999536712485817 hm5C_site_42005 DeepMRMD:1;iRNA_m5C:0.999536712485817 42006 chr2 217311862 217311862 1 + G A UCEC 217311866 + 217311846 217311886 41 CATGCCTTTGGACTTCGCTACTGTGATGCCAAACGGGTATG CATGCCTTTGGACTTCACTACTGTGATGCCAAACGGGTATG < 41bp 1 0.416005175128236 1 0.0473084151744843 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311866 chr2:217311862 nonsynonymous SNV 1.000 5 17 hm5C_associated_SNPs_42982 0 0 0 2 1 chromatin 1 0.500231643921098 1 0.999536712157803 hm5C_site_42006 DeepMRMD:1;iRNA_m5C:0.999536712157803 42007 chr1 154313344 154313344 1 + G A UCEC 154313339 + 154313319 154313359 41 CCCCTGTGCAGTGTGGAGGTCATCCGTCTGGGCCACAGCTA CCCCTGTGCAGTGTGGAGGTCATCCATCTGGGCCACAGCTA < 41bp 1 0.105938893072267 1 0.0305734872817993 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154313339 chr1:154313344 nonsynonymous SNV 0.996 4 26 hm5C_associated_SNPs_42983 0 0 1 0 0 chromatin 1 0.500231666053811 1 0.999536667892378 hm5C_site_42007 DeepMRMD:1;iRNA_m5C:0.999536667892378 42008 chr1 154313344 154313344 1 + G A UCEC 154313342 + 154313322 154313362 41 CTGTGCAGTGTGGAGGTCATCCGTCTGGGCCACAGCTACTT CTGTGCAGTGTGGAGGTCATCCATCTGGGCCACAGCTACTT < 41bp 1 0.113061878441325 1 0.0321570932865143 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154313342 chr1:154313344 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_42984 0 0 1 0 0 chromatin 1 0.500231643899576 1 0.999536712200848 hm5C_site_42008 DeepMRMD:1;iRNA_m5C:0.999536712200848 42009 chr17 48154398 48154398 1 + G A UCEC 48154383 + 48154363 48154403 41 AAATTGCTCCTGAGCATCAACGTGACGAACACCCGGACCTC AAATTGCTCCTGAGCATCAACGTGACGAACACCCGAACCTC < 41bp 1 0.682362729225839 1 0.465888321399689 experiment 0.635274541548321 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154383 chr17:48154398 synonymous SNV . 0 36 hm5C_associated_SNPs_42985 0 0 0 0 2 Cytosol 1 0.50023164392092 1 0.99953671215816 hm5C_site_42009 DeepMRMD:1;iRNA_m5C:0.99953671215816 42010 chr17 48154398 48154398 1 + G A UCEC 48154408 + 48154388 48154428 41 CGAACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCAC CGAACACCCGAACCTCGGAGCGCTCCGGGGAGGACGCCCAC < 41bp 1 0.107841518291905 1 0.142307877540588 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154408 chr17:48154398 synonymous SNV . 0 11 hm5C_associated_SNPs_42986 0 0 0 0 2 Cytosol 1 0.500231643795775 1 0.99953671240845 hm5C_site_42010 DeepMRMD:1;iRNA_m5C:0.99953671240845 42011 chr17 48154398 48154398 1 + G A UCEC 48154410 + 48154390 48154430 41 AACACCCGGACCTCGGAGCGCTCCGGGGAGGACGCCCACGA AACACCCGAACCTCGGAGCGCTCCGGGGAGGACGCCCACGA < 41bp 1 0.578385050637676 1 0.765070259571075 experiment 0.843229898724648 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48154410 chr17:48154398 synonymous SNV . 0 9 hm5C_associated_SNPs_42987 0 0 0 0 2 Cytosol 1 0.500231644072674 0.46985948085785 0.999536711854651 hm5C_site_42011 DeepMRMD:0.46985948085785;iRNA_m5C:0.999536711854651 42012 chr9 139730262 139730262 1 + G A UCEC 139730261 + 139730241 139730281 41 CGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGG CGCCACGCTGGAGGAGCTGTCAGTGCAGCAGGAGACGGAGG < 41bp 1 0.481985137743974 1 0.558240115642548 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139730261 chr9:139730262 synonymous SNV . 0 22 hm5C_associated_SNPs_42988 0 0 1 1 2 chromatin 1 0.500231578894718 0.883519768714904 0.999536842210565 hm5C_site_42012 DeepMRMD:0.883519768714904;iRNA_m5C:0.999536842210565 42013 chr5 908490 908490 1 + C T UCEC 908507 + 908487 908527 41 CGCCCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG CGCTCGAAATGCCTGCAGGGCGGGCACCGAGCCATCAGATG < 41bp 1 0.540329602113494 1 0.302717089653015 experiment 0.919340795773012 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TRIP13 ENSG00000071539 CDS Human protein_coding chr5:908507 chr5:908490 synonymous SNV . 0 4 hm5C_associated_SNPs_42990 0 0 1 0 2 Ribosome 1 0.500231643946852 1 0.999536712106295 hm5C_site_42013 DeepMRMD:1;iRNA_m5C:0.999536712106295 42014 chr11 125445274 125445274 1 + G T UCEC 125445260 + 125445240 125445280 41 CGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAAGAGCCCA CGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAATAGCCCA < 41bp 1 0.688500536006585 1 0.43730503320694 experiment 0.62299892798683 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EI24 ENSG00000149547 CDS Human protein_coding chr11:125445260 chr11:125445274 stopgain 0.998 4 35 hm5C_associated_SNPs_42992 0 0 1 2 3 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_42014 DeepMRMD:1;iRNA_m5C:0.999536712157815 42015 chr19 42398345 42398345 1 + A T UCEC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GTCAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT < 41bp 1 0.155623399622772 1 0.401497393846512 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398345 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_42993 0 0 1 0 2 Cytosol 1 0.500231643921048 1 0.999536712157904 hm5C_site_42015 DeepMRMD:1;iRNA_m5C:0.999536712157904 42016 chr19 56172418 56172418 1 + C A UCEC 56172435 + 56172415 56172455 41 ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGG ATTACAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGG < 41bp 1 0.604002407604264 1 0.72695380449295 experiment 0.791995184791472 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172435 chr19:56172418 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_42994 0 0 1 0 1 Ribosome 1 0.50023164392714 0.5460923910141 0.999536712145719 hm5C_site_42016 DeepMRMD:0.5460923910141;iRNA_m5C:0.999536712145719 42017 chr19 56172418 56172418 1 + C A UCEC 56172437 + 56172417 56172457 41 TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTC TACAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTC < 41bp 1 0.140769279748631 1 0.142303436994553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172437 chr19:56172418 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_42995 0 0 1 0 1 Ribosome 1 0.500231643921198 1 0.999536712157604 hm5C_site_42017 DeepMRMD:1;iRNA_m5C:0.999536712157604 42018 chr20 60963513 60963513 1 + G T UCEC 60963516 + 60963496 60963536 41 TTTTCCCCTGGTTCTAGGAACTTTTGACTGGAGAGAATCAC TTTTCCCCTGGTTCTAGTAACTTTTGACTGGAGAGAATCAC < 41bp 1 0.153124052771151 1 0.0490667521953583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963516 chr20:60963513 nonsynonymous SNV 0.932 1 18 hm5C_associated_SNPs_42997 0 0 1 1 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42018 DeepMRMD:1;iRNA_m5C:0.999536712157815 42019 chrX 70517700 70517700 1 + G A UCEC 70517707 + 70517687 70517727 41 CAGGAGGAAGAGCGCAGGCGCCGTGAAGAAGAGATGCGGCG CAGGAGGAAGAGCACAGGCGCCGTGAAGAAGAGATGCGGCG < 41bp 1 0.179988274665629 1 0.288371682167053 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517707 chrX:70517700 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_42998 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42019 DeepMRMD:1;iRNA_m5C:0.999536712157815 42020 chr11 121495975 121495975 1 + A T UCEC 121495977 + 121495957 121495997 41 CCATCCTGCTGTACGATGAGCTGGGGTCTGGTGAGTTGCGA CCATCCTGCTGTACGATGTGCTGGGGTCTGGTGAGTTGCGA < 41bp 1 0.448612706719602 1 0.421901792287827 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SORL1 ENSG00000137642 CDS Human protein_coding chr11:121495977 chr11:121495975 nonsynonymous SNV 0.870 2 19 hm5C_associated_SNPs_42999 0 0 1 0 1 Nucleus 1 0.500231107127567 1 0.999537785744865 hm5C_site_42020 DeepMRMD:1;iRNA_m5C:0.999537785744865 42021 chr14 102502976 102502976 1 + C A UCEC 102502965 + 102502945 102502985 41 GTGCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGT GTGCACTGAGATTCGGTAACCCCCTTCTGGTACAGGTTGGT < 41bp 1 0.0389917435473406 1 0.0467683970928192 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502965 chr14:102502976 synonymous SNV . 0 32 hm5C_associated_SNPs_43000 0 0 1 0 1 Cytosol 1 0.500231691406573 1 0.999536617186853 hm5C_site_42021 DeepMRMD:1;iRNA_m5C:0.999536617186853 42022 chr14 102502976 102502976 1 + C A UCEC 102502967 + 102502947 102502987 41 GCACTGAGATTCGGTAACCCCCTTCTGGTCCAGGTTGGTGT GCACTGAGATTCGGTAACCCCCTTCTGGTACAGGTTGGTGT < 41bp 1 0.0103070109324478 1 0.0528272390365601 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102502967 chr14:102502976 synonymous SNV . 0 30 hm5C_associated_SNPs_43001 0 0 1 0 1 Cytosol 1 0.500231677860011 1 0.999536644279977 hm5C_site_42022 DeepMRMD:1;iRNA_m5C:0.999536644279977 42023 chr17 21731059 21731059 1 + T G UCEC 21731040 + 21731020 21731060 41 GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCGT < 41bp 1 0.2841671960886 1 0.368293553590775 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731040 chr17:21731059 nonsynonymous SNV 0.962 2 40 hm5C_associated_SNPs_43004 0 0 1 0 0 Ribosome 1 0.500231643921098 1 0.999536712157803 hm5C_site_42023 DeepMRMD:1;iRNA_m5C:0.999536712157803 42024 chr1 231401803 231401803 1 + T G UCEC 231401783 + 231401763 231401803 41 TTCTGAATATTGTGATGGAGCCATTTTTTAAAAGAGAAGTT TTCTGAATATTGTGATGGAGCCATTTTTTAAAAGAGAAGTG < 41bp 1 0.0857851457105864 1 0.0545059442520142 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401783 chr1:231401803 synonymous SNV . 0 41 hm5C_associated_SNPs_43005 0 0 1 0 1 Cytosol 1 0.500231643921104 1 0.999536712157792 hm5C_site_42024 DeepMRMD:1;iRNA_m5C:0.999536712157792 42025 chr9 91930098 91930098 1 + C T UCEC 91930099 + 91930079 91930119 41 TAACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAG TAACAGGCATGTTATGTTATCCAGAGAACTTTCCAAACAAG < 41bp 1 0.683957446417988 1 0.699949562549591 experiment 0.632085107164025 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930099 chr9:91930098 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_43006 0 0 1 0 1 Ribosome 1 0.500231328931212 0.600100874900818 0.999537342137576 hm5C_site_42025 DeepMRMD:0.600100874900818;iRNA_m5C:0.999537342137576 42026 chr9 91930098 91930098 1 + C T UCEC 91930100 + 91930080 91930120 41 AACAGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAGT AACAGGCATGTTATGTTATCCAGAGAACTTTCCAAACAAGT < 41bp 1 0.497682009109605 1 0.670906662940979 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930100 chr9:91930098 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_43007 0 0 1 0 1 Ribosome 1 0.500231637187769 0.658186674118042 0.999536725624462 hm5C_site_42026 DeepMRMD:0.658186674118042;iRNA_m5C:0.999536725624462 42027 chr14 24634093 24634093 1 + C A UCEC 24634110 + 24634090 24634130 41 CACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACGAGTGC CACATGGGCCAGGCCCGCATCTGCTGCCCAGCAACGAGTGC < 41bp 1 0.559674772199058 1 0.423234522342682 experiment 0.880650455601884 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRF9 ENSG00000213928 CDS Human protein_coding chr14:24634110 chr14:24634093 nonsynonymous SNV 0.759 3 4 hm5C_associated_SNPs_43009 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42027 DeepMRMD:1;iRNA_m5C:0.999536712157815 42028 chrX 69712424 69712424 1 + C T UCEC 69712418 + 69712398 69712438 41 GAAAACTGTGAAGTTCCATGCCAGGACGGGGATGATTGAGT GAAAACTGTGAAGTTCCATGCCAGGATGGGGATGATTGAGT < 41bp 1 0.184808916711345 1 0.419523060321808 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DLG3 ENSG00000082458 CDS Human protein_coding chrX:69712418 chrX:69712424 nonsynonymous SNV 0.997 3 27 hm5C_associated_SNPs_43010 0 0 1 0 0 Ribosome 1 0.500231643923048 1 0.999536712153905 hm5C_site_42028 DeepMRMD:1;iRNA_m5C:0.999536712153905 42029 chrX 21995204 21995204 1 + G T UCEC 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACCCATAGTGCGAGGAGGATCCATCGACAGATACTGGCCCA < 41bp 1 0.214487924121787 1 0.384813070297241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995204 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_43011 0 0 1 0 1 Ribosome 1 0.500231643693929 1 0.999536712612142 hm5C_site_42029 DeepMRMD:1;iRNA_m5C:0.999536712612142 42030 chr5 139917043 139917043 1 + C T UCEC 139917055 + 139917035 139917075 41 GATACCTCCCCCAATTGGAACAGAGAGACTGGCCCGAATTC GATACCTCTCCCAATTGGAACAGAGAGACTGGCCCGAATTC < 41bp 1 0.307483965638307 1 0.72403085231781 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139917055 chr5:139917043 nonsynonymous SNV 0.948 3 9 hm5C_associated_SNPs_43012 0 0 1 0 1 unknown 1 0.500231643921092 0.55193829536438 0.999536712157815 hm5C_site_42030 DeepMRMD:0.55193829536438;iRNA_m5C:0.999536712157815 42031 chr14 24634098 24634098 1 + C A UCEC 24634110 + 24634090 24634130 41 CACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACGAGTGC CACCTGGGACAGGCCCGCATCTGCTGCCCAGCAACGAGTGC < 41bp 1 0.564631523628623 1 0.364329755306244 experiment 0.870736952742753 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRF9 ENSG00000213928 CDS Human protein_coding chr14:24634110 chr14:24634098 nonsynonymous SNV 0.759 2 9 hm5C_associated_SNPs_43013 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_42031 DeepMRMD:1;iRNA_m5C:0.999536712157816 42032 chr1 206653222 206653222 1 + A C UCEC 206653240 + 206653220 206653260 41 GGACGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG GGCCGTCCCCAAGTTCGTCCCCAAAGTGGACCTGCAGGCGG < 41bp 1 0.451237572738455 1 0.260539293289185 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control IKBKE ENSG00000143466 CDS Human other chr1:206653240 chr1:206653222 nonsynonymous SNV 0.828 2 3 hm5C_associated_SNPs_43014 0 0 0 0 2 Cytosol 1 0.500231643921134 1 0.999536712157731 hm5C_site_42032 DeepMRMD:1;iRNA_m5C:0.999536712157731 42033 chr17 76061006 76061006 1 + C A UCEC 76061001 + 76060981 76061021 41 TGGCGCACCTGTTGCTGCCTCAGCCCTGTGCAAACCAGGTA TGGCGCACCTGTTGCTGCCTCAGCCATGTGCAAACCAGGTA < 41bp 1 0.246133274840363 1 0.21899026632309 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76061001 chr17:76061006 nonsynonymous SNV 0.995 2 26 hm5C_associated_SNPs_43015 0 0 1 0 1 chromatin 1 0.50023164321471 1 0.999536713570579 hm5C_site_42033 DeepMRMD:1;iRNA_m5C:0.999536713570579 42034 chr15 68583497 68583497 1 + G A UCEC 68583493 + 68583473 68583513 41 ATGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCG ATGAAGATGAGTCTCAAGTGCCTGACTGCCCGAGCAGTTCG < 41bp 1 0.311961325214546 1 0.0596278309822083 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583493 chr15:68583497 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_43018 0 0 1 0 0 Ribosome 1 0.500231625048768 1 0.999536749902465 hm5C_site_42034 DeepMRMD:1;iRNA_m5C:0.999536749902465 42035 chr15 68583497 68583497 1 + G A UCEC 68583494 + 68583474 68583514 41 TGAAGATGAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGG TGAAGATGAGTCTCAAGTGCCTGACTGCCCGAGCAGTTCGG < 41bp 1 0.259558425695117 1 0.182042002677917 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583494 chr15:68583497 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_43019 0 0 1 0 0 Ribosome 1 0.500231625214129 1 0.999536749571742 hm5C_site_42035 DeepMRMD:1;iRNA_m5C:0.999536749571742 42036 chr15 68583497 68583497 1 + G A UCEC 68583501 + 68583481 68583521 41 GAGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGGGCTAATG GAGTCTCAAGTGCCTGACTGCCCGAGCAGTTCGGGCTAATG < 41bp 1 0.35982909198023 1 0.284038662910461 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583501 chr15:68583497 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_43020 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42036 DeepMRMD:1;iRNA_m5C:0.999536712157815 42037 chr15 68583497 68583497 1 + G A UCEC 68583502 + 68583482 68583522 41 AGTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGGGCTAATGA AGTCTCAAGTGCCTGACTGCCCGAGCAGTTCGGGCTAATGA < 41bp 1 0.371888461623508 1 0.47824501991272 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583502 chr15:68583497 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_43021 0 0 1 0 0 Ribosome 1 0.500231644010496 1 0.999536711979009 hm5C_site_42037 DeepMRMD:1;iRNA_m5C:0.999536711979009 42038 chr15 68583497 68583497 1 + G A UCEC 68583503 + 68583483 68583523 41 GTCTCAAGTGCCTGGCTGCCCGAGCAGTTCGGGCTAATGAC GTCTCAAGTGCCTGACTGCCCGAGCAGTTCGGGCTAATGAC < 41bp 1 0.544895509358138 1 0.422917455434799 experiment 0.910208981283723 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583503 chr15:68583497 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_43022 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42038 DeepMRMD:1;iRNA_m5C:0.999536712157815 42039 chr15 68583497 68583497 1 + G A UCEC 68583507 + 68583487 68583527 41 CAAGTGCCTGGCTGCCCGAGCAGTTCGGGCTAATGACATTA CAAGTGCCTGACTGCCCGAGCAGTTCGGGCTAATGACATTA < 41bp 1 0.157615216967366 1 0.0636910200119019 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient FEM1B ENSG00000169018 CDS Human protein_coding chr15:68583507 chr15:68583497 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_43023 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42039 DeepMRMD:1;iRNA_m5C:0.999536712157815 42040 chr1 24022841 24022841 1 + G A UCEC 24022845 + 24022825 24022865 41 CTCTTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAAT CTCTTTCAGTATGATGAGATCATCCTTCCTGGCAAATAAAT < 41bp 1 0.0885803577476065 1 0.034270852804184 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022845 chr1:24022841 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_43025 0 0 1 0 1 Cytosol 1 0.500231643887954 1 0.999536712224091 hm5C_site_42040 DeepMRMD:1;iRNA_m5C:0.999536712224091 42041 chr1 24022841 24022841 1 + G A UCEC 24022848 + 24022828 24022868 41 TTTCAGTATGATGGGATCATCCTTCCTGGCAAATAAATTCC TTTCAGTATGATGAGATCATCCTTCCTGGCAAATAAATTCC < 41bp 1 0.0275606571158339 1 0.0607724785804749 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24022848 chr1:24022841 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_43026 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_42041 DeepMRMD:1;iRNA_m5C:0.999536712157817 42042 chr19 13051195 13051195 1 + C T UCEC 13051175 + 13051155 13051195 41 AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATC AGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATT < 41bp 1 0.318127413358566 1 0.122254312038422 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13051175 chr19:13051195 nonsynonymous SNV 0.997 2 41 hm5C_associated_SNPs_43027 0 0 1 0 1 Ribosome 1 0.500230933012475 1 0.999538133975049 hm5C_site_42042 DeepMRMD:1;iRNA_m5C:0.999538133975049 42043 chr1 228362929 228362929 1 + C T UCEC 228362945 + 228362925 228362965 41 TTGGCCAGGAGCTGACGGCCCGCACCCACCACATGGGCGTC TTGGTCAGGAGCTGACGGCCCGCACCCACCACATGGGCGTC < 41bp 1 0.2942790040309 1 0.038653165102005 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IBA57 ENSG00000181873 CDS Human protein_coding chr1:228362945 chr1:228362929 synonymous SNV . 0 5 hm5C_associated_SNPs_43029 0 0 1 0 0 Ribosome 1 0.500224663729437 1 0.999550672541125 hm5C_site_42043 DeepMRMD:1;iRNA_m5C:0.999550672541125 42044 chr3 134851693 134851693 1 + C T UCEC 134851688 + 134851668 134851708 41 CATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCC CATCTGCAAAAAGTGCCGGGCAGACTGCCGGAGCTGCTCCC < 41bp 1 0.138457792124227 1 0.323684096336365 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851688 chr3:134851693 nonsynonymous SNV 0.993 3 26 hm5C_associated_SNPs_43030 0 0 0 1 0 exosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_42044 DeepMRMD:1;iRNA_m5C:0.999536712157813 42045 chr1 155106000 155106000 1 + A T UCEC 155106004 + 155105984 155106024 41 CCCATCCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGT CCCATCCACCAGCATGTAGACCGCTGCTTGAGGTTGAAGGT < 41bp 1 0.200388976381544 1 0.123533844947815 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106004 chr1:155106000 nonsynonymous SNV 0.935 2 17 hm5C_associated_SNPs_43031 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_42045 DeepMRMD:1;iRNA_m5C:0.999536712157816 42046 chr6 26045882 26045882 1 + G A UCEC 26045888 + 26045868 26045908 41 AGGACTTCAAAACCGACCTGCGTTTCCAGAGCTCTGCGGTG AGGACTTCAAAACCAACCTGCGTTTCCAGAGCTCTGCGGTG < 41bp 1 0.0582814922144967 1 0.0442266166210175 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H3C ENSG00000196532 CDS Human other chr6:26045888 chr6:26045882 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_43032 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42046 DeepMRMD:1;iRNA_m5C:0.999536712157815 42047 chr19 13002745 13002745 1 + G T UCEC 13002759 + 13002739 13002779 41 CTGCCAGGAGAGACTCATGCCTCGCATCCTGTTGGCCAATC CTGCCATGAGAGACTCATGCCTCGCATCCTGTTGGCCAATC < 41bp 1 0.576762919942688 1 0.244449704885483 experiment 0.846474160114623 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13002759 chr19:13002745 nonsynonymous SNV 0.992 3 7 hm5C_associated_SNPs_43033 0 0 1 0 1 Ribosome 1 0.50023164403587 1 0.99953671192826 hm5C_site_42047 DeepMRMD:1;iRNA_m5C:0.99953671192826 42048 chr8 143816765 143816765 1 + G A UCEC 143816777 + 143816757 143816797 41 AGCTGCCCGCTGATCTGCAGCACTGGATCTCCTACAACGAG AGCTGCCCACTGATCTGCAGCACTGGATCTCCTACAACGAG < 41bp 1 0.201035690325394 1 0.169612348079681 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THEM6 ENSG00000130193 CDS Human protein_coding chr8:143816777 chr8:143816765 nonsynonymous SNV 0.438 0 9 hm5C_associated_SNPs_43034 0 0 1 0 1 Ribosome 1 0.500231644090267 1 0.999536711819465 hm5C_site_42048 DeepMRMD:1;iRNA_m5C:0.999536711819465 42049 chr19 1036137 1036137 1 + T C UCEC 1036125 + 1036105 1036145 41 TCCCGGCCCCTTTCCCTCACCCAGGCCAAGACTAAGGGGCT TCCCGGCCCCTTTCCCTCACCCAGGCCAAGACCAAGGGGCT < 41bp 1 0.314783458066883 1 0.70249879360199 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1036125 chr19:1036137 synonymous SNV . 0 33 hm5C_associated_SNPs_43035 0 0 1 0 2 Ribosome 1 0.500231643921092 0.59500241279602 0.999536712157815 hm5C_site_42049 DeepMRMD:0.59500241279602;iRNA_m5C:0.999536712157815 42050 chr11 722468 722468 1 + C T UCEC 722478 + 722458 722498 41 TCCCGAGATGCCGTGGACTTCCTGCGCGGCCACCTGGTCCC TCCCGAGATGTCGTGGACTTCCTGCGCGGCCACCTGGTCCC < 41bp 1 0.270284528707235 1 0.129941076040268 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722478 chr11:722468 nonsynonymous SNV 0.017 1 11 hm5C_associated_SNPs_43036 0 0 1 0 2 Cytosol 1 0.500231643921145 1 0.999536712157709 hm5C_site_42050 DeepMRMD:1;iRNA_m5C:0.999536712157709 42051 chr7 151791328 151791328 1 + G T UCEC 151791339 + 151791319 151791359 41 AGTGTCACAGTTCGGTATTTCTGTTATGGGTGCCTTTTTAC AGTGTCACATTTCGGTATTTCTGTTATGGGTGCCTTTTTAC < 41bp 1 0.233106432726199 1 0.0547597110271454 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151791339 chr7:151791328 nonsynonymous SNV 0.998 1 10 hm5C_associated_SNPs_43037 0 0 1 0 1 chromatin 1 0.500231643916431 1 0.999536712167138 hm5C_site_42051 DeepMRMD:1;iRNA_m5C:0.999536712167138 42052 chrX 70519859 70519859 1 + C A UCEC 70519864 + 70519844 70519884 41 GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGCAGCT GGGCAATTGGTGGAAATCCTCCTGCATTCAACCGTGCAGCT < 41bp 1 0.256496458680957 1 0.219072639942169 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70519864 chrX:70519859 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_43038 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_42052 DeepMRMD:1;iRNA_m5C:0.999536712157816 42053 chr3 57994418 57994418 1 + G A UCEC 57994399 + 57994379 57994419 41 CTCAAGTGCGTGAACAAACGCATCGGCAACCTGCAGACCGA CTCAAGTGCGTGAACAAACGCATCGGCAACCTGCAGACCAA < 41bp 1 0.243557469781247 1 0.168918013572693 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:57994399 chr3:57994418 nonsynonymous SNV 0.998 5 40 hm5C_associated_SNPs_43039 0 0 1 0 0 Cytosol 1 0.500231683897802 1 0.999536632204395 hm5C_site_42053 DeepMRMD:1;iRNA_m5C:0.999536632204395 42054 chr19 41306507 41306507 1 + A G UCEC 41306503 + 41306483 41306523 41 CAGCCCGTGCCAGCCGCAGCCCCTAAGTCAGGCTCTCCCTC CAGCCCGTGCCAGCCGCAGCCCCTGAGTCAGGCTCTCCCTC < 41bp 1 0.212136894138776 1 0.205751150846481 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41306503 chr19:41306507 synonymous SNV . 0 25 hm5C_associated_SNPs_43040 0 0 1 0 0 chromatin 1 0.500231643922984 1 0.999536712154033 hm5C_site_42054 DeepMRMD:1;iRNA_m5C:0.999536712154033 42055 chrX 21995199 21995199 1 + G A UCEC 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACCCATAGTGCGAGAAGGAGCCATCGACAGATACTGGCCCA < 41bp 1 0.161595556895989 1 0.271789491176605 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995199 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_43041 0 0 1 0 1 Ribosome 1 0.50023163967 1 0.99953672066 hm5C_site_42055 DeepMRMD:1;iRNA_m5C:0.99953672066 42056 chrX 106893244 106893244 1 + C A UCEC 106893248 + 106893228 106893268 41 CCGTTTCTTACCTATTCAGCCATGTCCCTTTATAATAGAGT CCGTTTCTTACCTATTAAGCCATGTCCCTTTATAATAGAGT < 41bp 1 0.0567063020110457 1 0.0808222591876984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893248 chrX:106893244 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_43042 0 0 1 0 1 Ribosome 1 0.50023164392087 1 0.999536712158259 hm5C_site_42056 DeepMRMD:1;iRNA_m5C:0.999536712158259 42057 chrX 106893244 106893244 1 + C A UCEC 106893253 + 106893233 106893273 41 TCTTACCTATTCAGCCATGTCCCTTTATAATAGAGTAACTT TCTTACCTATTAAGCCATGTCCCTTTATAATAGAGTAACTT < 41bp 1 0.0733483328225044 1 0.0632898807525635 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPS1 ENSG00000147224 CDS Human protein_coding chrX:106893253 chrX:106893244 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_43043 0 0 1 0 1 Ribosome 1 0.500231643869653 1 0.999536712260694 hm5C_site_42057 DeepMRMD:1;iRNA_m5C:0.999536712260694 42058 chr12 7019080 7019080 1 + A C UCEC 7019093 + 7019073 7019113 41 AGGTGGAAGGCTTGGAGGATCTGAGCAATCTCACCACCTTG AGGTGGACGGCTTGGAGGATCTGAGCAATCTCACCACCTTG < 41bp 1 0.637247354367533 1 0.0847408175468445 experiment 0.725505291264934 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7019093 chr12:7019080 nonsynonymous SNV 0.979 0 8 hm5C_associated_SNPs_43044 0 0 0 0 1 Cytosol 1 0.500231227253724 1 0.999537545492551 hm5C_site_42058 DeepMRMD:1;iRNA_m5C:0.999537545492551 42059 chr2 224824674 224824674 1 + C T UCEC 224824686 + 224824666 224824706 41 ATTGGAGCCCTGTTACAGAGCAGTGGACCTGAGAGGACTGC ATTGGAGCTCTGTTACAGAGCAGTGGACCTGAGAGGACTGC < 41bp 1 0.512767296151875 1 0.184419721364975 experiment 0.974465407696251 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824686 chr2:224824674 synonymous SNV . 0 9 hm5C_associated_SNPs_43045 0 0 1 0 0 Ribosome 1 0.500215832640403 1 0.999568334719194 hm5C_site_42059 DeepMRMD:1;iRNA_m5C:0.999568334719194 42060 chr22 38028088 38028088 1 + C T UCEC 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCTGACGTG < 41bp 1 0.407587387498002 1 0.171290010213852 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028088 synonymous SNV . 0 35 hm5C_associated_SNPs_43046 0 0 1 0 2 chromatin 1 0.500231643920844 1 0.999536712158312 hm5C_site_42060 DeepMRMD:1;iRNA_m5C:0.999536712158312 Pneumonia 42061 chr2 224824670 224824670 1 + G T UCEC 224824686 + 224824666 224824706 41 ATTGGAGCCCTGTTACAGAGCAGTGGACCTGAGAGGACTGC ATTGTAGCCCTGTTACAGAGCAGTGGACCTGAGAGGACTGC < 41bp 1 0.455499221357814 1 0.359405755996704 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824686 chr2:224824670 nonsynonymous SNV 0.992 4 5 hm5C_associated_SNPs_43047 0 0 1 0 0 Ribosome 1 0.500231652776989 1 0.999536694446023 hm5C_site_42061 DeepMRMD:1;iRNA_m5C:0.999536694446023 42062 chr12 52370259 52370259 1 + G T UCEC 52370279 + 52370259 52370299 41 GAGACTGGACATGGAAGATCCCTCATGTGAGATGTGTCTCT TAGACTGGACATGGAAGATCCCTCATGTGAGATGTGTCTCT < 41bp 1 0.223141618532338 1 0.506209790706635 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52370279 chr12:52370259 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_43048 0 0 1 0 0 Endoplasmic reticulum 1 0.500231646618817 0.98758041858673 0.999536706762367 hm5C_site_42062 DeepMRMD:0.98758041858673;iRNA_m5C:0.999536706762367 42063 chrX 135291509 135291509 1 + C T UCEC 135291501 + 135291481 135291521 41 TCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATC TCTCACCCTGTTTCCCAGCGCCAACCTCTGGGGCAGGCATC < 41bp 1 0.0730378223539875 1 0.236107856035233 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291501 chrX:135291509 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_43049 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42063 DeepMRMD:1;iRNA_m5C:0.999536712157815 42064 chrX 135291509 135291509 1 + C T UCEC 135291502 + 135291482 135291522 41 CTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCC CTCACCCTGTTTCCCAGCGCCAACCTCTGGGGCAGGCATCC < 41bp 1 0.181547881071307 1 0.160467505455017 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291502 chrX:135291509 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_43050 0 0 1 0 1 chromatin 1 0.50023164298776 1 0.99953671402448 hm5C_site_42064 DeepMRMD:1;iRNA_m5C:0.99953671402448 42065 chr19 45389218 45389218 1 + G A UCEC 45389205 + 45389185 45389225 41 ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAGCCACCAA ACCCCACAGCCTGGAGGGACCTCCCTCCTACAAACCACCAA < 41bp 1 0.35419531101465 1 0.150093525648117 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389205 chr19:45389218 synonymous SNV . 0 34 hm5C_associated_SNPs_43051 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42065 DeepMRMD:1;iRNA_m5C:0.999536712157815 42066 chr19 3207654 3207654 1 + C A UCEC 3207638 + 3207618 3207658 41 TGTCCCCAGCACTTCAGCCTCCTCTACAAGACCGTCCAGAG TGTCCCCAGCACTTCAGCCTCCTCTACAAGACCGTCAAGAG < 41bp 1 0.0634035631984 1 0.136086195707321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NCLN ENSG00000125912 CDS Human protein_coding chr19:3207638 chr19:3207654 nonsynonymous SNV 0.682 0 37 hm5C_associated_SNPs_43052 0 0 1 0 2 Ribosome 1 0.500231686331389 1 0.999536627337221 hm5C_site_42066 DeepMRMD:1;iRNA_m5C:0.999536627337221 42067 chr10 118314932 118314932 1 + G T UCEC 118314913 + 118314893 118314933 41 ATTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGA ATTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTATA < 41bp 1 0.351364702775284 1 0.11738595366478 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314913 chr10:118314932 nonsynonymous SNV 0.983 5 40 hm5C_associated_SNPs_43053 0 0 0 0 1 unknown 1 0.500231643921149 1 0.999536712157703 hm5C_site_42067 DeepMRMD:1;iRNA_m5C:0.999536712157703 42068 chr10 118314932 118314932 1 + G T UCEC 118314914 + 118314894 118314934 41 TTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGAT TTTCAGGGTTTGGAATGAGCCAAGTCGTGGGCCACCTATAT < 41bp 1 0.55452942077097 1 0.271724939346313 experiment 0.89094115845806 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314914 chr10:118314932 nonsynonymous SNV 0.983 5 39 hm5C_associated_SNPs_43054 0 0 0 0 1 unknown 1 0.500231636167687 1 0.999536727664626 hm5C_site_42068 DeepMRMD:1;iRNA_m5C:0.999536727664626 42069 chr10 118314932 118314932 1 + G T UCEC 118314919 + 118314899 118314939 41 GGGTTTGGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTT GGGTTTGGAATGAGCCAAGTCGTGGGCCACCTATATTTCTT < 41bp 1 0.639924411157045 1 0.288639605045319 experiment 0.72015117768591 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314919 chr10:118314932 nonsynonymous SNV 0.983 5 34 hm5C_associated_SNPs_43055 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_42069 DeepMRMD:1;iRNA_m5C:0.999536712157815 42070 chr10 118314932 118314932 1 + G T UCEC 118314925 + 118314905 118314945 41 GGAATGAGCCAAGTCGTGGGCCACCTAGATTTCTTTCCAAA GGAATGAGCCAAGTCGTGGGCCACCTATATTTCTTTCCAAA < 41bp 1 0.0964701989963231 1 0.0425909459590912 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314925 chr10:118314932 nonsynonymous SNV 0.983 5 28 hm5C_associated_SNPs_43056 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_42070 DeepMRMD:1;iRNA_m5C:0.999536712157815 Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined) 42071 chrX 70519880 70519880 1 + C T UCEC 70519864 + 70519844 70519884 41 GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGCAGCT GGGCAATTGGTGGAACTCCTCCTGCATTCAACCGTGTAGCT < 41bp 1 0.213249863456487 1 0.238839566707611 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70519864 chrX:70519880 nonsynonymous SNV 1.000 0 37 hm5C_associated_SNPs_43058 0 0 1 0 1 Nucleus 1 0.500231643921115 1 0.99953671215777 hm5C_site_42071 DeepMRMD:1;iRNA_m5C:0.99953671215777 42072 chr4 144336804 144336804 1 + T C UCEC 144336803 + 144336783 144336823 41 AAAAAAGAGTTTGAAAACAGCTACATTTTTGATATCAACAC AAAAAAGAGTTTGAAAACAGCCACATTTTTGATATCAACAC < 41bp 1 0.327736211661857 1 0.0869315564632416 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144336803 chr4:144336804 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_43059 0 0 1 0 0 chromatin 1 0.50087556321811 1 0.99824887356378 hm5C_site_42072 DeepMRMD:1;iRNA_m5C:0.99824887356378 42073 chr8 95835775 95835775 1 + G T UCEC 95835768 + 95835748 95835788 41 AGGAGTCACTGTTGGAGAAACATCTGCGCAAGCCCTGCCCG AGGAGTCACTGTTGGAGAAACATCTGCTCAAGCCCTGCCCG < 41bp 1 0.476627556664673 1 0.2525714635849 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95835768 chr8:95835775 nonsynonymous SNV 0.998 0 28 hm5C_associated_SNPs_43060 0 0 1 0 1 Nucleus 1 0.500231643923795 1 0.999536712152409 hm5C_site_42073 DeepMRMD:1;iRNA_m5C:0.999536712152409 42074 chr19 17313041 17313041 1 + C T UCEC 17313031 + 17313011 17313051 41 GAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTT GAGCGTGGCCAGAAGGACACCAACCTGGTCTTCAACCTCTT < 41bp 1 0.122996506636554 1 0.0811648368835449 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17313031 chr19:17313041 nonsynonymous SNV 0.997 5 31 hm5C_associated_SNPs_43061 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42074 DeepMRMD:1;iRNA_m5C:0.999536712157815 Multiple complex diseases 42075 chr9 96420502 96420502 1 + C T UCEC 96420497 + 96420477 96420517 41 AAAATTCTCAATGGTGCTTTCCGATCGTGGACGAAGAAGCA AAAATTCTCAATGGTGCTTTCCGATTGTGGACGAAGAAGCA < 41bp 1 0.0944140541921921 1 0.566449463367462 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96420497 chr9:96420502 nonsynonymous SNV 0.981 0 26 hm5C_associated_SNPs_43062 0 0 1 0 2 chromatin 1 0.500231629647862 0.867101073265076 0.999536740704276 hm5C_site_42075 DeepMRMD:0.867101073265076;iRNA_m5C:0.999536740704276 42076 chr9 129458206 129458206 1 + C T UCEC 129458218 + 129458198 129458238 41 GAACAGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG GAACAGAGTCCCTACGGCAGCAGCGACCCCTTCCAGCAGGG < 41bp 1 0.571220651168706 1 0.502475082874298 experiment 0.857558697662588 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458218 chr9:129458206 synonymous SNV . 0 9 hm5C_associated_SNPs_43063 0 0 0 0 3 Endoplasmic reticulum 1 0.500231643921092 0.995049834251404 0.999536712157815 hm5C_site_42076 DeepMRMD:0.995049834251404;iRNA_m5C:0.999536712157815 42077 chr1 16260531 16260531 1 + C T UCEC 16260511 + 16260491 16260531 41 ACAGCACCTCCAGTGACAAACAACTCTGAGATACAAGCCTC ACAGCACCTCCAGTGACAAACAACTCTGAGATACAAGCCTT < 41bp 1 0.171355571773797 1 0.494388103485107 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SPEN ENSG00000065526 CDS Human protein_coding chr1:16260511 chr1:16260531 nonsynonymous SNV 0.034 1 41 hm5C_associated_SNPs_43064 0 0 1 0 0 Endoplasmic reticulum 1 0.500231649248482 1 0.999536701503035 hm5C_site_42077 DeepMRMD:1;iRNA_m5C:0.999536701503035 42078 chr1 2160682 2160682 1 + G T UCEC 2160685 + 2160665 2160705 41 ACGGCCGACCAGCTGGAGATCCTCAAAGTCATGGGCATCCT ACGGCCGACCAGCTGGATATCCTCAAAGTCATGGGCATCCT < 41bp 1 0.305434021665495 1 0.0247483551502228 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKI ENSG00000157933 CDS Human protein_coding chr1:2160685 chr1:2160682 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_43065 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920991 1 0.999536712158019 hm5C_site_42078 DeepMRMD:1;iRNA_m5C:0.999536712158019 42079 chr12 58109588 58109588 1 + C T UCEC 58109596 + 58109576 58109616 41 GACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTA GACTACATCGATTGCGTGGACGAGCCCTTGTCCTGCTCTTA < 41bp 1 0.437772903798143 1 0.593159854412079 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OS9 ENSG00000135506 CDS Human protein_coding chr12:58109596 chr12:58109588 nonsynonymous SNV 0.523 4 13 hm5C_associated_SNPs_43066 0 0 1 0 1 Nucleus 1 0.500232442055177 0.813680291175842 0.999535115889647 hm5C_site_42079 DeepMRMD:0.813680291175842;iRNA_m5C:0.999535115889647 42080 chr12 58109588 58109588 1 + C T UCEC 58109602 + 58109582 58109622 41 ATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT ATCGATTGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCT < 41bp 1 0.365681737795736 1 0.0663501024246216 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient OS9 ENSG00000135506 CDS Human protein_coding chr12:58109602 chr12:58109588 nonsynonymous SNV 0.523 4 7 hm5C_associated_SNPs_43067 0 0 1 0 1 Nucleus 1 0.500231652394269 1 0.999536695211461 hm5C_site_42080 DeepMRMD:1;iRNA_m5C:0.999536695211461 42081 chr1 231401139 231401139 1 + C A UCEC 231401132 + 231401112 231401152 41 TGGCAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA TGGCAATAAACTCTACTGGGCTGTATTATCTGAATATGTAA < 41bp 1 0.380202021802445 1 0.044250100851059 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401132 chr1:231401139 nonsynonymous SNV 0.993 2 28 hm5C_associated_SNPs_43068 0 0 1 0 1 Cytosol 1 0.500231643927068 1 0.999536712145865 hm5C_site_42081 DeepMRMD:1;iRNA_m5C:0.999536712145865 42082 chr12 100732667 100732667 1 + A G UCEC 100732661 + 100732641 100732681 41 AAAGCAGACCCAACAAAGACCCACAGATATGTCTGCCCTTA AAAGCAGACCCAACAAAGACCCACAGGTATGTCTGCCCTTA < 41bp 1 0.510207073444613 1 0.0560541749000549 experiment 0.979585853110773 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732661 chr12:100732667 nonsynonymous SNV 0.996 2 27 hm5C_associated_SNPs_43069 0 0 0 0 0 chromatin 1 0.500231643921123 1 0.999536712157754 hm5C_site_42082 DeepMRMD:1;iRNA_m5C:0.999536712157754 42083 chr12 100732667 100732667 1 + A G UCEC 100732662 + 100732642 100732682 41 AAGCAGACCCAACAAAGACCCACAGATATGTCTGCCCTTAA AAGCAGACCCAACAAAGACCCACAGGTATGTCTGCCCTTAA < 41bp 1 0.685851110068617 1 0.0502360165119171 experiment 0.628297779862766 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732662 chr12:100732667 nonsynonymous SNV 0.996 2 26 hm5C_associated_SNPs_43070 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_42083 DeepMRMD:1;iRNA_m5C:0.999536712157816 42084 chr12 100732667 100732667 1 + A G UCEC 100732664 + 100732644 100732684 41 GCAGACCCAACAAAGACCCACAGATATGTCTGCCCTTAATA GCAGACCCAACAAAGACCCACAGGTATGTCTGCCCTTAATA < 41bp 1 0.46513931552218 1 0.770458102226257 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732664 chr12:100732667 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_43071 0 0 0 0 0 chromatin 1 0.50023164395597 0.459083795547486 0.99953671208806 hm5C_site_42084 DeepMRMD:0.459083795547486;iRNA_m5C:0.99953671208806 42085 chr12 100732667 100732667 1 + A G UCEC 100732676 + 100732656 100732696 41 AAGACCCACAGATATGTCTGCCCTTAATAATCTCTTTGGCC AAGACCCACAGGTATGTCTGCCCTTAATAATCTCTTTGGCC < 41bp 1 0.0704986279340867 1 0.078844428062439 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732676 chr12:100732667 nonsynonymous SNV 0.996 2 12 hm5C_associated_SNPs_43072 0 0 0 0 0 chromatin 1 0.500231643089324 1 0.999536713821353 hm5C_site_42085 DeepMRMD:1;iRNA_m5C:0.999536713821353 42086 chr12 100732667 100732667 1 + A G UCEC 100732687 + 100732667 100732707 41 ATATGTCTGCCCTTAATAATCTCTTTGGCCCTCAGAAACCC GTATGTCTGCCCTTAATAATCTCTTTGGCCCTCAGAAACCC < 41bp 1 0.569502451854151 1 0.0369229018688202 experiment 0.860995096291698 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100732687 chr12:100732667 nonsynonymous SNV 0.996 2 1 hm5C_associated_SNPs_43073 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42086 DeepMRMD:1;iRNA_m5C:0.999536712157815 42087 chr16 67197028 67197028 1 + C T UCEC 67197039 + 67197019 67197059 41 GACCTGCGGCGCTTGTCCTTCACACTGGACGACGCGCTGGT GACCTGCGGTGCTTGTCCTTCACACTGGACGACGCGCTGGT < 41bp 1 0.434598825159718 1 0.226219654083252 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXL8 ENSG00000135722 CDS Human protein_coding chr16:67197039 chr16:67197028 nonsynonymous SNV 0.592 1 10 hm5C_associated_SNPs_43074 0 0 0 0 0 exosome 1 0.500231566660054 1 0.999536866679892 hm5C_site_42087 DeepMRMD:1;iRNA_m5C:0.999536866679892 42088 chrX 73040666 73040666 1 + A T UCEC 73040659 - 73040639 73040679 41 AAGACTCTTGAACTTGTGAACTGATGTGAAATGCAGAATCT AAGACTCTTGAACATGTGAACTGATGTGAAATGCAGAATCT < 41bp 1 0.153797854378647 1 0.119292885065079 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040659 chrX:73040666 . . 0 14 hm5C_associated_SNPs_43075 0 0 1 1 0 unknown 1 0.500430261489809 1 0.999139477020382 hm5C_site_42088 DeepMRMD:1;iRNA_m5C:0.999139477020382 42089 chrX 73040666 73040666 1 + A T UCEC 73040667 - 73040647 73040687 41 ATAAATGGAAGACTCTTGAACTTGTGAACTGATGTGAAATG ATAAATGGAAGACTCTTGAACATGTGAACTGATGTGAAATG < 41bp 1 0.107814678645206 1 0.133708208799362 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040667 chrX:73040666 . . 0 22 hm5C_associated_SNPs_43076 0 0 1 1 0 unknown 1 0.500231654198118 1 0.999536691603765 hm5C_site_42089 DeepMRMD:1;iRNA_m5C:0.999536691603765 42090 chrX 73040666 73040666 1 + A T UCEC 73040673 - 73040653 73040693 41 GCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGATGT GCTAAGATAAATGGAAGACTCTTGAACATGTGAACTGATGT < 41bp 1 0.343806359739068 1 0.505150556564331 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040673 chrX:73040666 . . 0 28 hm5C_associated_SNPs_43077 0 0 1 1 0 unknown 1 0.500231643921369 0.989698886871338 0.999536712157261 hm5C_site_42090 DeepMRMD:0.989698886871338;iRNA_m5C:0.999536712157261 42091 chrX 73040666 73040666 1 + A T UCEC 73040675 - 73040655 73040695 41 AAGCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGAT AAGCTAAGATAAATGGAAGACTCTTGAACATGTGAACTGAT < 41bp 1 0.0760571452349461 1 0.0728810429573059 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73040675 chrX:73040666 . . 0 30 hm5C_associated_SNPs_43078 0 0 1 1 0 unknown 1 0.500231643596836 1 0.999536712806327 hm5C_site_42091 DeepMRMD:1;iRNA_m5C:0.999536712806327 42092 chr1 249212291 249212291 1 + G T UCEC 249212301 + 249212281 249212321 41 CAGCTGCATAGAATCTGCTGCCAAGATGCCCAGGTGGACCT CAGCTGCATATAATCTGCTGCCAAGATGCCCAGGTGGACCT < 41bp 1 0.152459230830393 1 0.0606851875782013 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212301 chr1:249212291 nonsynonymous SNV 0.356 1 11 hm5C_associated_SNPs_43079 0 0 0 0 0 Cytosol 1 0.500231644771112 1 0.999536710457775 hm5C_site_42092 DeepMRMD:1;iRNA_m5C:0.999536710457775 42093 chr2 27157530 27157530 1 + C A UCEC 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCGGATGCCTATGTCACGGTGCCTCCCCTGAGACTGG < 41bp 1 0.382431799582663 1 0.824084401130676 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157530 nonsynonymous SNV 0.418 5 9 hm5C_associated_SNPs_43080 0 0 0 0 2 Ribosome 1 0.500231643925823 0.351831197738648 0.999536712148353 hm5C_site_42093 DeepMRMD:0.351831197738648;iRNA_m5C:0.999536712148353 42094 chr11 33079499 33079499 1 + G T UCEC 33079509 + 33079489 33079529 41 GGTCATACTAGACTGAGAAACCAGATAACAGAAGTCTTGGA GGTCATACTATACTGAGAAACCAGATAACAGAAGTCTTGGA < 41bp 1 0.549313546098402 1 0.549352049827576 experiment 0.901372907803195 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33079509 chr11:33079499 nonsynonymous SNV 0.995 4 11 hm5C_associated_SNPs_43081 0 0 1 0 1 Ribosome 1 0.500231646860012 0.901295900344848 0.999536706279977 hm5C_site_42094 DeepMRMD:0.901295900344848;iRNA_m5C:0.999536706279977 42095 chr3 52233274 52233274 1 + G A UCEC 52233278 + 52233258 52233298 41 ATGGAGAGTGTTGTTCGCCGCTGCCCATTCTTATCCCGAGT ATGGAGAGTGTTGTTCACCGCTGCCCATTCTTATCCCGAGT < 41bp 1 0.36807640693166 1 0.232151746749878 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233278 chr3:52233274 nonsynonymous SNV 0.997 2 17 hm5C_associated_SNPs_43082 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42095 DeepMRMD:1;iRNA_m5C:0.999536712157815 42096 chr11 46388374 46388374 1 + C T UCEC 46388380 + 46388360 46388400 41 GGCGCCTCAGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGC GGCGCCTCAGCCAGTGGCGGCCCTCAGGCCAGCACCCTGGC < 41bp 1 0.0287039981618161 1 0.0567203164100647 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388380 chr11:46388374 nonsynonymous SNV 0.932 0 15 hm5C_associated_SNPs_43083 0 0 0 0 0 Ribosome 1 0.500231643931635 1 0.99953671213673 hm5C_site_42096 DeepMRMD:1;iRNA_m5C:0.99953671213673 42097 chr11 46388374 46388374 1 + C T UCEC 46388381 + 46388361 46388401 41 GCGCCTCAGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCC GCGCCTCAGCCAGTGGCGGCCCTCAGGCCAGCACCCTGGCC < 41bp 1 0.194810612106629 1 0.204897433519363 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388381 chr11:46388374 nonsynonymous SNV 0.932 0 14 hm5C_associated_SNPs_43084 0 0 0 0 0 Ribosome 1 0.500231643206321 1 0.999536713587359 hm5C_site_42097 DeepMRMD:1;iRNA_m5C:0.999536713587359 42098 chr11 46388374 46388374 1 + C T UCEC 46388382 + 46388362 46388402 41 CGCCTCAGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCCC CGCCTCAGCCAGTGGCGGCCCTCAGGCCAGCACCCTGGCCC < 41bp 1 0.515601520569304 1 0.387517273426056 experiment 0.968796958861392 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388382 chr11:46388374 nonsynonymous SNV 0.932 0 13 hm5C_associated_SNPs_43085 0 0 0 0 0 Ribosome 1 0.500231643729268 1 0.999536712541463 hm5C_site_42098 DeepMRMD:1;iRNA_m5C:0.999536712541463 42099 chr11 46388374 46388374 1 + C T UCEC 46388388 + 46388368 46388408 41 AGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCCCTGGGGG AGCCAGTGGCGGCCCTCAGGCCAGCACCCTGGCCCTGGGGG < 41bp 1 0.202602658861286 1 0.636006593704224 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388388 chr11:46388374 nonsynonymous SNV 0.932 0 7 hm5C_associated_SNPs_43087 0 0 0 0 0 Ribosome 1 0.500231643903534 0.727986812591552 0.999536712192932 hm5C_site_42099 DeepMRMD:0.727986812591552;iRNA_m5C:0.999536712192932 42100 chr16 3712061 3712061 1 + G A UCEC 3712045 - 3712025 3712065 41 CCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG CCTGTGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCG < 41bp 1 0.270404306243476 1 0.229632198810577 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712045 chr16:3712061 nonsynonymous SNV 0.988 4 5 hm5C_associated_SNPs_43088 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643925393 1 0.999536712149214 hm5C_site_42100 DeepMRMD:1;iRNA_m5C:0.999536712149214 42101 chr16 3712061 3712061 1 + G A UCEC 3712049 - 3712029 3712069 41 ACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAG ACTTCCTGTGCATGCAGCAGCTGGCCAAGACCCAGGAGGAG < 41bp 1 0.534217025315088 1 0.697154402732849 experiment 0.931565949369825 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712049 chr16:3712061 nonsynonymous SNV 0.988 4 9 hm5C_associated_SNPs_43089 0 0 1 0 2 Endoplasmic reticulum 1 0.500231569228244 0.605691194534302 0.999536861543513 hm5C_site_42101 DeepMRMD:0.605691194534302;iRNA_m5C:0.999536861543513 42102 chr16 3712061 3712061 1 + G A UCEC 3712068 - 3712048 3712088 41 GAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCT GAGATGGGGGCTGCCCGCCACTTCCTGTGCATGCAGCAGCT < 41bp 1 0.313267104817583 1 0.447661906480789 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712068 chr16:3712061 nonsynonymous SNV 0.988 4 28 hm5C_associated_SNPs_43091 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643919591 1 0.999536712160817 hm5C_site_42102 DeepMRMD:1;iRNA_m5C:0.999536712160817 42103 chr16 3712061 3712061 1 + G A UCEC 3712074 - 3712054 3712094 41 GTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCA GTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGTGCATGCA < 41bp 1 0.456860880066819 1 0.250251412391663 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3712074 chr16:3712061 nonsynonymous SNV 0.988 4 34 hm5C_associated_SNPs_43092 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643854248 1 0.999536712291504 hm5C_site_42103 DeepMRMD:1;iRNA_m5C:0.999536712291504 42104 chr7 79764321 79764321 1 + G T UCEC 79764327 + 79764307 79764347 41 CCCCTTTGCGGACAGCGTCTCCCTCGACTCCGCTTAGGAAG CCCCTTTGCGGACATCGTCTCCCTCGACTCCGCTTAGGAAG < 41bp 1 0.186643176434456 1 0.438763022422791 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GNAI1 ENSG00000127955 UTR5 Human protein_coding chr7:79764327 chr7:79764321 . . 0 15 hm5C_associated_SNPs_43093 0 0 0 0 0 Cytosol 1 0.500231643921122 1 0.999536712157757 hm5C_site_42104 DeepMRMD:1;iRNA_m5C:0.999536712157757 42105 chr5 153760010 153760010 1 + C T UCEC 153760024 + 153760004 153760044 41 TCAGACCGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC TCAGACTGCATTGCTCGGAACCGCAAGACCATTGTGTGCCC < 41bp 1 0.367002462863115 1 0.102664142847061 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153760024 chr5:153760010 nonsynonymous SNV 0.997 3 7 hm5C_associated_SNPs_43094 0 0 1 0 1 Ribosome 1 0.500231643785796 1 0.999536712428408 hm5C_site_42105 DeepMRMD:1;iRNA_m5C:0.999536712428408 42106 chr3 58112438 58112438 1 + G A UCEC 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCCTTTCACACCGGGGGATTACGATGTTA < 41bp 1 0.502343391482786 1 0.0641097724437714 experiment 0.995313217034429 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112438 nonsynonymous SNV 0.901 1 20 hm5C_associated_SNPs_43095 0 0 1 0 1 Cytosol 1 0.500231643921261 1 0.999536712157478 hm5C_site_42106 DeepMRMD:1;iRNA_m5C:0.999536712157478 42107 chr3 58112438 58112438 1 + G A UCEC 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCCTTTCACACCGGGGGATTACGATGTTAAT < 41bp 1 0.267206813041801 1 0.355527222156525 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112438 nonsynonymous SNV 0.901 1 18 hm5C_associated_SNPs_43096 0 0 1 0 1 Cytosol 1 0.500231643926353 1 0.999536712147294 hm5C_site_42107 DeepMRMD:1;iRNA_m5C:0.999536712147294 Rheumatoid Arthritis 42108 chr3 58112438 58112438 1 + G A UCEC 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCCTTTCACACCGGGGGATTACGATGTTAATA < 41bp 1 0.49384393953538 1 0.857243537902832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112438 nonsynonymous SNV 0.901 1 17 hm5C_associated_SNPs_43097 0 0 1 0 1 Cytosol 1 0.500231643921092 0.285512924194336 0.999536712157816 hm5C_site_42108 DeepMRMD:0.285512924194336;iRNA_m5C:0.999536712157816 42109 chr17 16332216 16332216 1 + C A UCEC 16332211 + 16332191 16332231 41 GTACCTGCCCCTGCTTGTGTCTGCGCTGGTGCTGGGCTGGC GTACCTGCCCCTGCTTGTGTCTGCGATGGTGCTGGGCTGGC < 41bp 1 0.686635247114527 1 0.441494882106781 experiment 0.626729505770947 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332211 chr17:16332216 nonsynonymous SNV 0.684 4 26 hm5C_associated_SNPs_43098 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643981149 1 0.999536712037702 hm5C_site_42109 DeepMRMD:1;iRNA_m5C:0.999536712037702 42110 chr16 30941547 30941547 1 + G A UCEC 30941537 + 30941517 30941557 41 TCTTCCTCCTCGGACTCAGACTCCGACTCCGACTCTTCGGG TCTTCCTCCTCGGACTCAGACTCCGACTCCAACTCTTCGGG < 41bp 1 0.455875438371962 1 0.80766361951828 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30941537 chr16:30941547 nonsynonymous SNV 0.481 1 31 hm5C_associated_SNPs_43099 0 0 1 0 0 chromatin 1 0.50023164392119 0.38467276096344 0.99953671215762 hm5C_site_42110 DeepMRMD:0.38467276096344;iRNA_m5C:0.99953671215762 42111 chr5 125820131 125820131 1 + C A UCEC 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACAGAATCCCAAACAGTTCTGAATGTATCCAAGG < 41bp 1 0.24510686338492 1 0.109240710735321 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820131 synonymous SNV . 0 34 hm5C_associated_SNPs_43100 0 0 0 4 2 Nucleus 1 0.500231643919705 1 0.99953671216059 hm5C_site_42111 DeepMRMD:1;iRNA_m5C:0.99953671216059 42112 chr16 70564776 70564776 1 + G A UCEC 70564775 + 70564755 70564795 41 CATGTAGTTGGAGTAGATGTCGGATTTGAAAATCCAATGTT CATGTAGTTGGAGTAGATGTCAGATTTGAAAATCCAATGTT < 41bp 1 0.43148443546507 1 0.570985019207001 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70564775 chr16:70564776 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_43101 0 0 1 0 1 Cytosol 1 0.500231643923175 0.858029961585998 0.999536712153651 hm5C_site_42112 DeepMRMD:0.858029961585998;iRNA_m5C:0.999536712153651 42113 chr22 24717322 24717322 1 + G T UCEC 24717339 + 24717319 24717359 41 AAAGATTACGTGAACGTACCCGATTAAACCAGAGCAAAAAA AAATATTACGTGAACGTACCCGATTAAACCAGAGCAAAAAA < 41bp 1 0.0862471821403567 1 0.115522801876068 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SPECC1L ENSG00000100014;ENSG00000258555 CDS Human other chr22:24717339 chr22:24717322 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_43102 0 0 1 0 1 Cytosol 1 0.500231666191234 1 0.999536667617532 hm5C_site_42113 DeepMRMD:1;iRNA_m5C:0.999536667617532 42114 chr4 99341223 99341223 1 + T G UCEC 99341204 + 99341184 99341224 41 AAGATGTTATCAGCTGGGGTCACAGAGGCAGTTTTGAAATT AAGATGTTATCAGCTGGGGTCACAGAGGCAGTTTTGAAAGT < 41bp 1 0.272624628930754 1 0.395879566669464 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99341204 chr4:99341223 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_43103 0 0 1 0 2 Ribosome 1 0.500231640613088 1 0.999536718773823 hm5C_site_42114 DeepMRMD:1;iRNA_m5C:0.999536718773823 42115 chr11 64884071 64884071 1 + G A UCEC 64884085 - 64884065 64884105 41 CAGTTCCTCCTGGCCTGGACCAACGAAAATGAGGCGGCCCT CAGTTCCTCCTGGCCTGGACCAACGAAAATGAGGTGGCCCT < 41bp 1 0.438463909899601 1 0.678160488605499 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNHIT2 ENSG00000174276 CDS Human protein_coding chr11:64884085 chr11:64884071 nonsynonymous SNV 0.886 0 35 hm5C_associated_SNPs_43104 0 0 0 0 0 Ribosome 1 0.500231643921088 0.643679022789002 0.999536712157823 hm5C_site_42115 DeepMRMD:0.643679022789002;iRNA_m5C:0.999536712157823 42116 chr10 24816979 24816979 1 + C A UCEC 24816988 + 24816968 24817008 41 CAATACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTG CAATACCAAATATGGAGATGCCGCCAGCCACAGGCCCACTG < 41bp 1 0.130496763400815 1 0.182758897542953 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816988 chr10:24816979 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_43105 0 0 1 0 1 Nucleus 1 0.5002316503098 1 0.999536699380399 hm5C_site_42116 DeepMRMD:1;iRNA_m5C:0.999536699380399 42117 chr10 24816979 24816979 1 + C A UCEC 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAAATATGGAGATGCCGCCAGCCACAGGCCCACTGCCAA < 41bp 1 0.241748940114061 1 0.587010860443115 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24816979 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_43106 0 0 1 0 1 Nucleus 1 0.500231643921882 0.82597827911377 0.999536712156237 hm5C_site_42117 DeepMRMD:0.82597827911377;iRNA_m5C:0.999536712156237 42118 chr11 68115607 68115607 1 + G T UCEC 68115603 + 68115583 68115623 41 GAAGCTGTACTGGACGGACTCAGAGACCAACCGCATCGAGG GAAGCTGTACTGGACGGACTCAGATACCAACCGCATCGAGG < 41bp 1 0.441588780238535 1 0.708045721054077 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68115603 chr11:68115607 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_43107 0 0 1 0 0 Endoplasmic reticulum 1 0.500231508550798 0.583908557891846 0.999536982898404 hm5C_site_42118 DeepMRMD:0.583908557891846;iRNA_m5C:0.999536982898404 42119 chr9 135946621 135946621 1 + G A UCEC 135946619 + 135946599 135946639 41 CGTGCCCCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGC CGTGCCCCCCACGGGTGACTCCAAGACCGCCCCCGTGCCGC < 41bp 1 0.559208331611234 1 0.64024806022644 experiment 0.881583336777533 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946619 chr9:135946621 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_43108 0 0 0 0 0 exosome 1 0.500231643905289 0.71950387954712 0.999536712189423 hm5C_site_42119 DeepMRMD:0.71950387954712;iRNA_m5C:0.999536712189423 42120 chr9 135946621 135946621 1 + G A UCEC 135946625 + 135946605 135946645 41 CCCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGG CCCCACGGGTGACTCCAAGACCGCCCCCGTGCCGCCCACGG < 41bp 1 0.320901951511273 1 0.420199275016785 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946625 chr9:135946621 nonsynonymous SNV 0.002 0 17 hm5C_associated_SNPs_43109 0 0 0 0 0 exosome 1 0.500231644023492 1 0.999536711953016 hm5C_site_42120 DeepMRMD:1;iRNA_m5C:0.999536711953016 42121 chr9 135946621 135946621 1 + G A UCEC 135946626 + 135946606 135946646 41 CCCACGGGTGACTCCGAGACCGCCCCCGTGCCGCCCACGGG CCCACGGGTGACTCCAAGACCGCCCCCGTGCCGCCCACGGG < 41bp 1 0.486550294686402 1 0.411805272102356 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135946626 chr9:135946621 nonsynonymous SNV 0.002 0 16 hm5C_associated_SNPs_43110 0 0 0 0 0 exosome 1 0.500231417020992 1 0.999537165958016 hm5C_site_42121 DeepMRMD:1;iRNA_m5C:0.999537165958016 42122 chr8 25323734 25323734 1 + G A UCEC 25323752 + 25323732 25323772 41 ACGAATATCAGCCTTCCAGTCAGCTTTTCACTCCATAAAGG ACAAATATCAGCCTTCCAGTCAGCTTTTCACTCCATAAAGG < 41bp 1 0.292883201664672 1 0.400552928447723 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CDCA2 ENSG00000184661 CDS Human protein_coding chr8:25323752 chr8:25323734 nonsynonymous SNV 0.417 0 3 hm5C_associated_SNPs_43111 0 0 1 0 1 Nucleus 1 0.500231643925162 1 0.999536712149677 hm5C_site_42122 DeepMRMD:1;iRNA_m5C:0.999536712149677 42123 chr12 93968548 93968548 1 + G T UCEC 93968564 + 93968544 93968584 41 AAAAGAGGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT AAAATAGGCACCAGAAGGAACTTTCTTGATTAGAGATAGCT < 41bp 1 0.0514720783421116 1 0.109131187200546 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93968564 chr12:93968548 stopgain 1.000 1 5 hm5C_associated_SNPs_43112 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42123 DeepMRMD:1;iRNA_m5C:0.999536712157815 42124 chr22 42049642 42049642 1 + G A UCEC 42049622 + 42049602 42049642 41 ACACACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTG ACACACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTA < 41bp 1 0.0714755506589781 1 0.159080982208252 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42049622 chr22:42049642 synonymous SNV . 0 41 hm5C_associated_SNPs_43113 0 0 1 0 1 Cytosol 1 0.500231644412934 1 0.999536711174132 hm5C_site_42124 DeepMRMD:1;iRNA_m5C:0.999536711174132 42125 chr22 42049642 42049642 1 + G A UCEC 42049626 + 42049606 42049646 41 ACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTGGTGC ACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTAGTGC < 41bp 1 0.14151889958761 1 0.0781862139701843 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42049626 chr22:42049642 synonymous SNV . 0 37 hm5C_associated_SNPs_43114 0 0 1 0 1 Cytosol 1 0.500231643921065 1 0.99953671215787 hm5C_site_42125 DeepMRMD:1;iRNA_m5C:0.99953671215787 42126 chr6 30593467 30593467 1 + C A UCEC 30593484 + 30593464 30593504 41 CATCTCCAAGAAGAGAGTGGCCCCCCACCTGAGTCAATGCC CATATCCAAGAAGAGAGTGGCCCCCCACCTGAGTCAATGCC < 41bp 1 0.100241978648727 1 0.0990270376205444 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS18B ENSG00000204568 CDS Human protein_coding chr6:30593484 chr6:30593467 nonsynonymous SNV 0.777 2 4 hm5C_associated_SNPs_43115 0 0 1 1 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42126 DeepMRMD:1;iRNA_m5C:0.999536712157815 42127 chr2 36691766 36691766 1 + G T UCEC 36691763 + 36691743 36691783 41 CTCTCGTGGCGATGGGACACCTGGAAAGTGCTGTGATGTCT CTCTCGTGGCGATGGGACACCTGTAAAGTGCTGTGATGTCT < 41bp 1 0.570588599517837 1 0.289806991815567 experiment 0.858822800964326 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36691763 chr2:36691766 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_43116 0 0 1 0 2 Nucleus 1 0.500232325678663 1 0.999535348642674 hm5C_site_42127 DeepMRMD:1;iRNA_m5C:0.999535348642674 42128 chr2 160623812 160623812 1 + G A UCEC 160623826 + 160623806 160623846 41 GATTCCGAAGAAGACGGAGACCATAACAGGACATTTGATAT GATTCCAAAGAAGACGGAGACCATAACAGGACATTTGATAT < 41bp 1 0.298639352569206 1 0.182178944349289 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160623826 chr2:160623812 nonsynonymous SNV 0.976 1 7 hm5C_associated_SNPs_43117 0 0 1 0 1 Cytosol 1 0.500231643527872 1 0.999536712944256 hm5C_site_42128 DeepMRMD:1;iRNA_m5C:0.999536712944256 42129 chr6 126210631 126210631 1 + A G UCEC 126210642 + 126210622 126210662 41 TGATGTTGAACTGAAGGGGGCGCTAGATTTAGAAACCTGTG TGATGTTGAGCTGAAGGGGGCGCTAGATTTAGAAACCTGTG < 41bp 1 0.359269748723744 1 0.396116703748703 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCOA7 ENSG00000111912 CDS Human protein_coding chr6:126210642 chr6:126210631 synonymous SNV . 0 10 hm5C_associated_SNPs_43118 0 0 0 0 0 Ribosome 1 0.500231643920979 1 0.999536712158042 hm5C_site_42129 DeepMRMD:1;iRNA_m5C:0.999536712158042 42130 chr15 50782548 50782548 1 + C A UCEC 50782564 + 50782544 50782584 41 TCATCTGCACCTCCTTCCACCCCTCCAACTCATAAAGCCAA TCATATGCACCTCCTTCCACCCCTCCAACTCATAAAGCCAA < 41bp 1 0.0467188566814908 1 0.177874207496643 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50782564 chr15:50782548 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_43119 0 0 1 0 1 Ribosome 1 0.500231643693536 1 0.999536712612928 hm5C_site_42130 DeepMRMD:1;iRNA_m5C:0.999536712612928 42131 chr5 162898226 162898226 1 + T G UCEC 162898209 + 162898189 162898229 41 AGTTTTCTGAAAATGGTAACCAGAAGAATTTGAGAATTCTA AGTTTTCTGAAAATGGTAACCAGAAGAATTTGAGAATGCTA < 41bp 1 0.689574506550189 1 0.788505077362061 experiment 0.620850986899621 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162898209 chr5:162898226 nonsynonymous SNV 0.995 1 38 hm5C_associated_SNPs_43120 0 0 1 0 1 Cytosol 1 0.500231643921092 0.422989845275878 0.999536712157815 hm5C_site_42131 DeepMRMD:0.422989845275878;iRNA_m5C:0.999536712157815 42132 chr3 123983489 123983489 1 + C A UCEC 123983506 + 123983486 123983526 41 CTTCTGGCAGAAACAGAAGACCAACTTTGGCAGCTCCAAAT CTTATGGCAGAAACAGAAGACCAACTTTGGCAGCTCCAAAT < 41bp 1 0.0477334672767652 1 0.0508805215358734 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:123983506 chr3:123983489 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_43121 0 0 0 0 1 nucleoplasm 1 0.500231643905397 1 0.999536712189206 hm5C_site_42132 DeepMRMD:1;iRNA_m5C:0.999536712189206 Cervical cancer 42133 chr17 30372815 30372815 1 + T C UCEC 30372808 + 30372788 30372828 41 AGTCAAGCTGCATTGCAACACTGCATGTCTGACTAACAGCA AGTCAAGCTGCATTGCAACACTGCATGCCTGACTAACAGCA < 41bp 1 0.690433157120638 1 0.208802282810211 experiment 0.619133685758725 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30372808 chr17:30372815 synonymous SNV . 0 28 hm5C_associated_SNPs_43122 0 0 1 0 2 chromatin 1 0.500231737885746 1 0.999536524228509 hm5C_site_42133 DeepMRMD:1;iRNA_m5C:0.999536524228509 42134 chr1 39851498 39851498 1 + C T UCEC 39851491 + 39851471 39851511 41 CGAGGTTAAGGAGGCTCAGACACTGTGCGATGAACTCTCAG CGAGGTTAAGGAGGCTCAGACACTGTGTGATGAACTCTCAG < 41bp 1 0.164537007841234 1 0.335527658462524 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39851491 chr1:39851498 synonymous SNV . 0 28 hm5C_associated_SNPs_43123 0 0 1 0 0 Endoplasmic reticulum 1 0.500231388744059 1 0.999537222511883 hm5C_site_42134 DeepMRMD:1;iRNA_m5C:0.999537222511883 42135 chr1 27190123 27190123 1 + G T UCEC 27190127 + 27190107 27190147 41 CCACCGGTGACGACAAGAAGCGCATCATTGACTCAGCCCGG CCACCGGTGACGACAATAAGCGCATCATTGACTCAGCCCGG < 41bp 1 0.438450150935581 1 0.420048594474792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFN ENSG00000175793 CDS Human protein_coding chr1:27190127 chr1:27190123 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_43124 0 0 0 0 0 Ribosome 1 0.500231644213452 1 0.999536711573096 hm5C_site_42135 DeepMRMD:1;iRNA_m5C:0.999536711573096 42136 chr19 8503325 8503325 1 + G T UCEC 8503319 + 8503299 8503339 41 TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCGCCTGAA TACTCCGAGTGGAGAAAGACCAACCATAAAGTTCGCCTGAA < 41bp 1 0.46640472378872 1 0.0869563519954681 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503319 chr19:8503325 nonsynonymous SNV 0.998 4 27 hm5C_associated_SNPs_43125 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42136 DeepMRMD:1;iRNA_m5C:0.999536712157815 42137 chr12 22214331 22214331 1 + C A UCEC 22214315 + 22214295 22214335 41 ACATTTATGTATCAGGAGACCAAAAAGAAATAATATCTTAT ACATTTATGTATCAGGAGACCAAAAAGAAATAATATATTAT < 41bp 1 0.364223069279066 1 0.527245461940765 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22214315 chr12:22214331 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_43126 0 0 1 0 1 Ribosome 1 0.50023164400498 0.94550907611847 0.99953671199004 hm5C_site_42137 DeepMRMD:0.94550907611847;iRNA_m5C:0.99953671199004 42138 chr2 37475369 37475369 1 + G T UCEC 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGATA < 41bp 1 0.40909498303059 1 0.480537563562393 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475369 nonsynonymous SNV 0.997 3 40 hm5C_associated_SNPs_43127 0 0 1 1 1 chromatin 1 0.500224396724587 1 0.999551206550825 hm5C_site_42138 DeepMRMD:1;iRNA_m5C:0.999551206550825 42139 chr2 37475369 37475369 1 + G T UCEC 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGATAT < 41bp 1 0.421939278003884 1 0.397640526294708 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475369 nonsynonymous SNV 0.997 3 39 hm5C_associated_SNPs_43128 0 0 1 1 1 chromatin 1 0.500231649421964 1 0.999536701156072 hm5C_site_42139 DeepMRMD:1;iRNA_m5C:0.999536701156072 42140 chr1 6271147 6271147 1 + C T UCEC 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCCACTGCTGCTGCTGGGGCCACGTTGGGTGGCAGCTGCTG < 41bp 1 0.456523659648011 1 0.38383424282074 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271147 nonsynonymous SNV 0.001 2 26 hm5C_associated_SNPs_43129 0 0 1 0 2 Nucleus 1 0.500231643929675 1 0.999536712140651 hm5C_site_42140 DeepMRMD:1;iRNA_m5C:0.999536712140651 42141 chr14 100563932 100563932 1 + G T UCEC 100563942 + 100563922 100563962 41 AAGTAAAGAAGAGGCAACCACGTTCTCCAATGCAATGCTGT AAGTAAAGAATAGGCAACCACGTTCTCCAATGCAATGCTGT < 41bp 1 0.0259239606008869 1 0.0858523845672607 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVL ENSG00000196405 CDS Human protein_coding chr14:100563942 chr14:100563932 stopgain 0.970 1 11 hm5C_associated_SNPs_43130 0 0 0 0 1 chromatin 1 0.500231666385666 1 0.999536667228667 hm5C_site_42141 DeepMRMD:1;iRNA_m5C:0.999536667228667 42142 chr12 54394190 54394190 1 + C T UCEC 54394180 + 54394160 54394200 41 GCACGTCGTGGGCGCCCGTGCCCTCTCAGTCGTCCGTGGTA GCACGTCGTGGGCGCCCGTGCCCTCTCAGTTGTCCGTGGTA < 41bp 1 0.153204483657384 1 0.0518771708011627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54394180 chr12:54394190 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_43131 0 0 1 0 0 chromatin 1 0.500231643921021 1 0.999536712157958 hm5C_site_42142 DeepMRMD:1;iRNA_m5C:0.999536712157958 42143 chr20 44526710 44526710 1 + G A UCEC 44526703 + 44526683 44526723 41 GACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGTTCTC GACAGCGGGGAGCAGATTGCCGGCTTCATGAAGGAGTTCTC < 41bp 1 0.666038357846928 1 0.704003036022186 experiment 0.667923284306144 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44526703 chr20:44526710 nonsynonymous SNV 0.844 5 28 hm5C_associated_SNPs_43132 0 0 1 2 2 Ribosome 1 0.500231633568734 0.591993927955628 0.999536732862532 hm5C_site_42143 DeepMRMD:0.591993927955628;iRNA_m5C:0.999536732862532 42144 chr2 32640458 32640458 1 + C A UCEC 32640443 + 32640423 32640463 41 TCAGCAATTTGCAGATGCAGCAGCCAACCTTACCTCTCCGG TCAGCAATTTGCAGATGCAGCAGCCAACCTTACCTATCCGG < 41bp 1 0.09441244500271 1 0.531444787979126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32640443 chr2:32640458 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_43133 0 0 1 0 0 Nucleus 1 0.500231643921092 0.937110424041748 0.999536712157815 hm5C_site_42144 DeepMRMD:0.937110424041748;iRNA_m5C:0.999536712157815 42145 chr2 86360307 86360307 1 + G T UCEC 86360303 + 86360283 86360323 41 TTTTTGCCTTCATCACAGTTCCAAGTTCTTCGATTTGATTT TTTTTGCCTTCATCACAGTTCCAATTTCTTCGATTTGATTT < 41bp 1 0.0459322511967172 1 0.0226196050643921 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360303 chr2:86360307 nonsynonymous SNV 0.530 1 25 hm5C_associated_SNPs_43134 0 0 1 0 2 Nucleus 1 0.500231643920953 1 0.999536712158095 hm5C_site_42145 DeepMRMD:1;iRNA_m5C:0.999536712158095 42146 chr4 146463817 146463817 1 + G A UCEC 146463820 + 146463800 146463840 41 TGGACACAAACATGATGGCGCCTCCCCTGCCCTCAGAAATC TGGACACAAACATGATGACGCCTCCCCTGCCCTCAGAAATC < 41bp 1 0.0294126849991915 1 0.0942295491695404 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146463820 chr4:146463817 nonsynonymous SNV 0.990 2 18 hm5C_associated_SNPs_43135 0 0 0 0 2 Endoplasmic reticulum 1 0.500231666053843 1 0.999536667892313 hm5C_site_42146 DeepMRMD:1;iRNA_m5C:0.999536667892313 42147 chrX 47083814 47083814 1 + C A UCEC 47083794 + 47083774 47083814 41 CTGCCACCAGAGATTGTGCACGAGGACTTGAAGATGGGGTC CTGCCACCAGAGATTGTGCACGAGGACTTGAAGATGGGGTA < 41bp 1 0.677259785200945 1 0.902820408344269 experiment 0.64548042959811 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CDK16 ENSG00000102225 CDS Human protein_coding chrX:47083794 chrX:47083814 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_43136 0 0 1 0 1 Ribosome 1 0.500231643527383 0.194359183311462 0.999536712945234 hm5C_site_42147 DeepMRMD:0.194359183311462;iRNA_m5C:0.999536712945234 42148 chr4 81118811 81118811 1 + C A UCEC 81118826 + 81118806 81118846 41 CACCTCTTGACATGGAAATACACTGATACAATAGGCAAAAG CACCTATTGACATGGAAATACACTGATACAATAGGCAAAAG < 41bp 1 0.382101159184393 1 0.0856525301933289 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRDM8 ENSG00000152784 UTR5 Human protein_coding chr4:81118826 chr4:81118811 . . 0 6 hm5C_associated_SNPs_43137 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_42148 DeepMRMD:1;iRNA_m5C:0.999536712157816 42149 chr7 127569264 127569264 1 + C A UCEC 127569246 + 127569226 127569266 41 TCTTTTCTCCATCAGGATACCCAAAAAGCAAAGCAGTTCCT TCTTTTCTCCATCAGGATACCCAAAAAGCAAAGCAGTTACT < 41bp 1 0.0741181303725526 1 0.175528883934021 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127569246 chr7:127569264 nonsynonymous SNV 0.995 1 39 hm5C_associated_SNPs_43138 0 0 1 0 1 Cytosol 1 0.500231643943947 1 0.999536712112106 hm5C_site_42149 DeepMRMD:1;iRNA_m5C:0.999536712112106 42150 chr14 24900777 24900777 1 + G A UCEC 24900790 + 24900770 24900810 41 CTGCCTGGCCTGGAGCACGTCAGCCCATCTGGTGCCCAGGG CTGCCTGACCTGGAGCACGTCAGCCCATCTGGTGCCCAGGG < 41bp 1 0.469319496438166 1 0.331104785203934 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KHNYN ENSG00000100441 CDS Human protein_coding chr14:24900790 chr14:24900777 nonsynonymous SNV 0.722 0 8 hm5C_associated_SNPs_43139 0 0 1 0 0 Cytosol 1 0.500231643918936 1 0.999536712162127 hm5C_site_42150 DeepMRMD:1;iRNA_m5C:0.999536712162127 42151 chr1 155057763 155057763 1 + G T UCEC 155057768 + 155057748 155057788 41 GGCTTCAAGCGCTGGGAGTGCAACCGGCCGCACGCCCCGCA GGCTTCAAGCGCTGGTAGTGCAACCGGCCGCACGCCCCGCA < 41bp 1 0.430652216565996 1 0.55690211057663 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EFNA3 ENSG00000143590;ENSG00000251246 CDS Human other chr1:155057768 chr1:155057763 stopgain 1.000 1 16 hm5C_associated_SNPs_43140 0 0 0 0 0 chromatin 1 0.500231643921093 0.88619577884674 0.999536712157814 hm5C_site_42151 DeepMRMD:0.88619577884674;iRNA_m5C:0.999536712157814 42152 chr6 43155547 43155547 1 + C A UCEC 43155540 + 43155520 43155560 41 CTCAGTAGTCGATTTGAGGGCAGCACTCTCAATGACCTGCT CTCAGTAGTCGATTTGAGGGCAGCACTATCAATGACCTGCT < 41bp 1 0.530923498273249 1 0.170821785926819 experiment 0.938153003453502 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43155540 chr6:43155547 nonsynonymous SNV 0.985 2 28 hm5C_associated_SNPs_43141 0 0 0 0 1 chromatin 1 0.500231643921049 1 0.999536712157903 hm5C_site_42152 DeepMRMD:1;iRNA_m5C:0.999536712157903 42153 chr4 20568893 20568893 1 + G T UCEC 20568888 + 20568868 20568908 41 TTTGAATTAATTTTCAGGTCCTGTGGATGTCAATATTCTAG TTTGAATTAATTTTCAGGTCCTGTGTATGTCAATATTCTAG < 41bp 1 0.0675374722687087 1 0.0650830864906311 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20568888 chr4:20568893 nonsynonymous SNV 0.998 4 26 hm5C_associated_SNPs_43142 0 0 0 0 1 Ribosome 1 0.500231919164005 1 0.99953616167199 hm5C_site_42153 DeepMRMD:1;iRNA_m5C:0.99953616167199 42154 chr6 117037417 117037417 1 + G T UCEC 117037411 + 117037391 117037431 41 AAATTCAAACAGACTCACAACAACAAGAAATGCCGTGTGGG AAATTCAAACAGACTCACAACAACAATAAATGCCGTGTGGG < 41bp 1 0.580246426854186 1 0.434971868991852 experiment 0.839507146291629 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117037411 chr6:117037417 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_43143 0 0 1 0 2 chromatin 1 0.500226307899795 1 0.999547384200409 hm5C_site_42154 DeepMRMD:1;iRNA_m5C:0.999547384200409 42155 chr16 5122980 5122980 1 + G T UCEC 5122983 + 5122963 5123003 41 CATGATGAGCTCTTGCAGAACAACAGAATTCAGATTGTGGG CATGATGAGCTCTTGCATAACAACAGAATTCAGATTGTGGG < 41bp 1 0.534935672640138 1 0.190896213054657 experiment 0.930128654719723 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5122983 chr16:5122980 nonsynonymous SNV 0.536 1 18 hm5C_associated_SNPs_43144 0 0 1 0 2 Ribosome 1 0.500231764409288 1 0.999536471181424 hm5C_site_42155 DeepMRMD:1;iRNA_m5C:0.999536471181424 42156 chr10 71855414 71855414 1 + C T UCEC 71855433 + 71855413 71855453 41 TCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG TTCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATGAG < 41bp 1 0.41790421342264 1 0.223039299249649 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71855433 chr10:71855414 nonsynonymous SNV 0.971 4 2 hm5C_associated_SNPs_43145 0 0 0 2 2 Ribosome 1 0.500231643922161 1 0.999536712155678 hm5C_site_42156 DeepMRMD:1;iRNA_m5C:0.999536712155678 42157 chr5 122435575 122435575 1 + G A UCEC 122435560 + 122435540 122435580 41 ATCTGCGCGGCGCAGAGGATCCAGCAAGGCACCTGGATTGG ATCTGCGCGGCGCAGAGGATCCAGCAAGGCACCTGAATTGG < 41bp 1 0.279177232563004 1 0.113263726234436 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRDM6 ENSG00000061455 CDS Human protein_coding chr5:122435560 chr5:122435575 stopgain 1.000 1 36 hm5C_associated_SNPs_43146 0 0 0 0 1 exosome 1 0.500231643890276 1 0.999536712219448 hm5C_site_42157 DeepMRMD:1;iRNA_m5C:0.999536712219448 42158 chr12 124074982 124074982 1 + G A UCEC 124074965 + 124074945 124074985 41 GTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAGAAT GTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAAAAT < 41bp 1 0.626277821051376 1 0.236889630556107 experiment 0.747444357897247 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074965 chr12:124074982 nonsynonymous SNV 0.997 1 38 hm5C_associated_SNPs_43147 0 0 1 0 2 Ribosome 1 0.500231643921087 1 0.999536712157826 hm5C_site_42158 DeepMRMD:1;iRNA_m5C:0.999536712157826 42159 chr18 8635555 8635555 1 + C A UCEC 8635557 + 8635537 8635577 41 TCAGAAGATGCAGAGCTTCTCTTAGTTGGAAATAAGTTGGA TCAGAAGATGCAGAGCTTATCTTAGTTGGAAATAAGTTGGA < 41bp 1 0.514228758067397 1 0.4312943816185 experiment 0.971542483865206 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RAB12 ENSG00000206418 CDS Human protein_coding chr18:8635557 chr18:8635555 nonsynonymous SNV 0.988 0 19 hm5C_associated_SNPs_43148 0 0 1 0 2 Ribosome 1 0.500231655881486 1 0.999536688237028 hm5C_site_42159 DeepMRMD:1;iRNA_m5C:0.999536688237028 42160 chr6 116565144 116565144 1 + C A UCEC 116565147 + 116565127 116565167 41 TGGCTACTATCCAAATCCTCCACTGGTCTTATCAAGTGATG TGGCTACTATCCAAATCATCCACTGGTCTTATCAAGTGATG < 41bp 1 0.263187579325173 1 0.0264369249343872 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116565147 chr6:116565144 nonsynonymous SNV 0.101 2 18 hm5C_associated_SNPs_43149 0 0 1 0 1 Cytosol 1 0.500232114172687 1 0.999535771654627 hm5C_site_42160 DeepMRMD:1;iRNA_m5C:0.999535771654627 42161 chr3 4776945 4776945 1 + C T UCEC 4776929 + 4776909 4776949 41 TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATCGACC TCACCTTGACAAGGAGGGGGCTTCCAATCTAGTTATTGACC < 41bp 1 0.0183997558300573 1 0.0732423961162567 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4776929 chr3:4776945 synonymous SNV . 0 37 hm5C_associated_SNPs_43150 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_42161 DeepMRMD:1;iRNA_m5C:0.999536712157814 42162 chr7 142460406 142460406 1 + G T UCEC 142460388 + 142460368 142460408 41 AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGA AGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAATGA < 41bp 1 0.14547036831502 1 0.0794779360294342 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460388 chr7:142460406 nonsynonymous SNV 0.982 5 39 hm5C_associated_SNPs_43151 0 0 0 0 1 Cytosol 1 0.50023164389127 1 0.99953671221746 hm5C_site_42162 DeepMRMD:1;iRNA_m5C:0.99953671221746 42163 chr7 142460406 142460406 1 + G T UCEC 142460391 + 142460371 142460411 41 AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTC AACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAATGATTC < 41bp 1 0.0282791623997072 1 0.0588495135307312 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460391 chr7:142460406 nonsynonymous SNV 0.982 5 36 hm5C_associated_SNPs_43152 0 0 0 0 1 Cytosol 1 0.50023164399422 1 0.99953671201156 hm5C_site_42163 DeepMRMD:1;iRNA_m5C:0.99953671201156 42164 chr7 142460406 142460406 1 + G T UCEC 142460392 + 142460372 142460412 41 ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCA ACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAATGATTCA < 41bp 1 0.605983330382988 1 0.383349508047104 experiment 0.788033339234025 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460392 chr7:142460406 nonsynonymous SNV 0.982 5 35 hm5C_associated_SNPs_43153 0 0 0 0 1 Cytosol 1 0.500231753049513 1 0.999536493900974 hm5C_site_42164 DeepMRMD:1;iRNA_m5C:0.999536493900974 42165 chr7 142460406 142460406 1 + G T UCEC 142460403 + 142460383 142460423 41 GTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAGGTGAT GTGGGCTTCCTTGAGGGAGGCAATGATTCATGTCAGGTGAT < 41bp 1 0.166916337613516 1 0.177618324756622 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460403 chr7:142460406 nonsynonymous SNV 0.982 5 24 hm5C_associated_SNPs_43154 0 0 0 0 1 Cytosol 1 0.500231643152477 1 0.999536713695045 hm5C_site_42165 DeepMRMD:1;iRNA_m5C:0.999536713695045 42166 chr7 142460406 142460406 1 + G T UCEC 142460411 + 142460391 142460431 41 CCTTGAGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAA CCTTGAGGGAGGCAATGATTCATGTCAGGTGATTTGACCAA < 41bp 1 0.508705883064127 1 0.189401477575302 experiment 0.982588233871745 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460411 chr7:142460406 nonsynonymous SNV 0.982 5 16 hm5C_associated_SNPs_43155 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42166 DeepMRMD:1;iRNA_m5C:0.999536712157815 42167 chr7 142460406 142460406 1 + G T UCEC 142460416 + 142460396 142460436 41 AGGGAGGCAAGGATTCATGTCAGGTGATTTGACCAACCCTT AGGGAGGCAATGATTCATGTCAGGTGATTTGACCAACCCTT < 41bp 1 0.56157756531931 1 0.765519261360168 experiment 0.87684486936138 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460416 chr7:142460406 nonsynonymous SNV 0.982 5 11 hm5C_associated_SNPs_43156 0 0 0 0 1 Cytosol 1 0.50023164405296 0.468961477279664 0.999536711894081 hm5C_site_42167 DeepMRMD:0.468961477279664;iRNA_m5C:0.999536711894081 42168 chr1 24782719 24782719 1 + C T UCEC 24782707 + 24782687 24782727 41 GGGAACCTGCAGCTTGACTACCCCATCTTCTACGTGATGTT GGGAACCTGCAGCTTGACTACCCCATCTTCTATGTGATGTT < 41bp 1 0.439848832723351 1 0.200465828180313 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24782707 chr1:24782719 synonymous SNV . 0 33 hm5C_associated_SNPs_43157 0 0 1 0 1 Endoplasmic reticulum 1 0.500231642904939 1 0.999536714190121 hm5C_site_42168 DeepMRMD:1;iRNA_m5C:0.999536714190121 42169 chr16 30664155 30664155 1 + G A UCEC 30664142 + 30664122 30664162 41 TGCCTCGCCACCCCGGCAGGCCGGGTGGTCCTCGCAGGCCA TGCCTCGCCACCCCGGCAGGCCGGGTGGTCCTCACAGGCCA < 41bp 1 0.685568897751901 1 0.543845474720001 experiment 0.628862204496197 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRR14 ENSG00000156858 CDS Human protein_coding chr16:30664142 chr16:30664155 synonymous SNV . 0 34 hm5C_associated_SNPs_43158 0 0 1 0 1 Cytosol 1 0.500231640463127 0.912309050559998 0.999536719073747 hm5C_site_42169 DeepMRMD:0.912309050559998;iRNA_m5C:0.999536719073747 42170 chr15 90771602 90771602 1 + C T UCEC 90771587 + 90771567 90771607 41 TTGCTCTACCGGCACCGGAACAGCATGAAAGTCTTCCTGAA TTGCTCTACCGGCACCGGAACAGCATGAAAGTCTTTCTGAA < 41bp 1 0.591767258340103 1 0.712498307228088 experiment 0.816465483319793 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90771587 chr15:90771602 synonymous SNV . 0 36 hm5C_associated_SNPs_43159 0 0 1 0 0 chromatin 1 0.500231643921092 0.575003385543824 0.999536712157815 hm5C_site_42170 DeepMRMD:0.575003385543824;iRNA_m5C:0.999536712157815 42171 chr5 140084151 140084151 1 + G T UCEC 140084145 + 140084125 140084165 41 TTGAGGAAAGGATGAAGGAGCTCAGAGAAGAGGTAAGGGTC TTGAGGAAAGGATGAAGGAGCTCAGATAAGAGGTAAGGGTC < 41bp 1 0.618048449423046 1 0.493384122848511 experiment 0.763903101153908 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084145 chr5:140084151 stopgain 0.999 1 27 hm5C_associated_SNPs_43160 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42171 DeepMRMD:1;iRNA_m5C:0.999536712157815 42172 chr5 140084151 140084151 1 + G T UCEC 140084147 + 140084127 140084167 41 GAGGAAAGGATGAAGGAGCTCAGAGAAGAGGTAAGGGTCTC GAGGAAAGGATGAAGGAGCTCAGATAAGAGGTAAGGGTCTC < 41bp 1 0.632416496262203 1 0.41048589348793 experiment 0.735167007475593 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084147 chr5:140084151 stopgain 0.999 1 25 hm5C_associated_SNPs_43161 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42172 DeepMRMD:1;iRNA_m5C:0.999536712157815 42173 chr6 33657073 33657073 1 + C T UCEC 33657075 + 33657055 33657095 41 CCTCATCTGCTTCTCCATCGCGGCCCTGTTCACCAAGCGCT CCTCATCTGCTTCTCCATTGCGGCCCTGTTCACCAAGCGCT < 41bp 1 0.193716200744171 1 0.47996786236763 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33657075 chr6:33657073 synonymous SNV . 0 19 hm5C_associated_SNPs_43162 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921096 1 0.999536712157809 hm5C_site_42173 DeepMRMD:1;iRNA_m5C:0.999536712157809 42174 chr17 48631725 48631725 1 + G A UCEC 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TGTGTGTGCCTATTGACCACCTTTTCCGAGCGCATGCGTCG < 41bp 1 0.0545949277485065 1 0.0153005719184875 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631725 nonsynonymous SNV 0.779 1 19 hm5C_associated_SNPs_43163 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42174 DeepMRMD:1;iRNA_m5C:0.999536712157815 42175 chrX 107097884 107097884 1 + G A UCEC 107097904 + 107097884 107097924 41 GAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA AAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCA < 41bp 1 0.112909546125481 1 0.126875847578049 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MID2 ENSG00000080561 CDS Human protein_coding chrX:107097904 chrX:107097884 nonsynonymous SNV 0.991 3 1 hm5C_associated_SNPs_43164 0 0 0 0 2 nucleus 1 0.500231643915804 1 0.999536712168392 hm5C_site_42175 DeepMRMD:1;iRNA_m5C:0.999536712168392 42176 chr5 7885875 7885875 1 + C A UCEC 7885861 + 7885841 7885881 41 GATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGT GATGCCTTCAGCGTGATCTGCCCTAACAGTGATTATGAGGT < 41bp 1 0.210390996606038 1 0.0861481726169586 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885861 chr5:7885875 nonsynonymous SNV 0.802 1 35 hm5C_associated_SNPs_43165 0 0 1 0 1 Nucleus 1 0.500231643113668 1 0.999536713772665 hm5C_site_42176 DeepMRMD:1;iRNA_m5C:0.999536713772665 42177 chr5 7885875 7885875 1 + C A UCEC 7885862 + 7885842 7885882 41 ATGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTA ATGCCTTCAGCGTGATCTGCCCTAACAGTGATTATGAGGTA < 41bp 1 0.186971433818721 1 0.139536172151566 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885862 chr5:7885875 nonsynonymous SNV 0.802 1 34 hm5C_associated_SNPs_43166 0 0 1 0 1 Nucleus 1 0.500231643956883 1 0.999536712086234 hm5C_site_42177 DeepMRMD:1;iRNA_m5C:0.999536712086234 42178 chr5 7885875 7885875 1 + C A UCEC 7885863 + 7885843 7885883 41 TGCCTTCAGCGTGATCTGCCCTAACAGTGATTCTGAGGTAC TGCCTTCAGCGTGATCTGCCCTAACAGTGATTATGAGGTAC < 41bp 1 0.271754026761663 1 0.0892837941646576 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885863 chr5:7885875 nonsynonymous SNV 0.802 1 33 hm5C_associated_SNPs_43167 0 0 1 0 1 Nucleus 1 0.500231643968829 1 0.999536712062343 hm5C_site_42178 DeepMRMD:1;iRNA_m5C:0.999536712062343 42179 chr1 227618476 227618476 1 + C A UCEC 227618466 + 227618446 227618486 41 TCCATGCCAGTACAAGATCCCGGACTGGTTCTTGAACAGAC TCCATGCCAGTACAAGATCCCGGACTGGTTATTGAACAGAC < 41bp 1 0.205618015153114 1 0.649778485298157 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC42BPA;ZNF678 ENSG00000234277;ENSG00000242757 ncRNA_exonic Human other chr1:227618466 chr1:227618476 . . 0 31 hm5C_associated_SNPs_43168 0 0 0 0 0 unknown 1 0.500231643921092 0.700443029403686 0.999536712157815 hm5C_site_42179 DeepMRMD:0.700443029403686;iRNA_m5C:0.999536712157815 42180 chr2 70096887 70096887 1 + G A UCEC 70096880 + 70096860 70096900 41 CGTTGGACAGGTTTTAACTTCGGCTTCGACCTACTTGTAAC CGTTGGACAGGTTTTAACTTCGGCTTCAACCTACTTGTAAC < 41bp 1 0.548186443547156 1 0.456648886203766 experiment 0.903627112905687 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096880 chr2:70096887 nonsynonymous SNV 0.940 3 28 hm5C_associated_SNPs_43169 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42180 DeepMRMD:1;iRNA_m5C:0.999536712157815 42181 chr2 242683168 242683168 1 + G A UCEC 242683180 + 242683160 242683200 41 CAACCAACGCTGGAGGCCTGCGGTTTCTTCGATATGGCTCA CAACCAACACTGGAGGCCTGCGGTTTCTTCGATATGGCTCA < 41bp 1 0.285014815036779 1 0.652176916599274 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242683180 chr2:242683168 nonsynonymous SNV 0.013 5 9 hm5C_associated_SNPs_43170 0 0 1 0 1 Ribosome 1 0.500234484084347 0.695646166801452 0.999531031831305 hm5C_site_42181 DeepMRMD:0.695646166801452;iRNA_m5C:0.999531031831305 42182 chr1 20224099 20224099 1 + G A UCEC 20224116 + 20224096 20224136 41 TACGACAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC TACAACAGTGTTCGGAGGATCAATGACAACTCAGAGGCACC < 41bp 1 0.247998536123173 1 0.369145572185516 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20224116 chr1:20224099 nonsynonymous SNV 0.992 1 4 hm5C_associated_SNPs_43171 0 0 1 0 2 Cytosol 1 0.500231643920963 1 0.999536712158074 hm5C_site_42182 DeepMRMD:1;iRNA_m5C:0.999536712158074 42183 chr2 232577534 232577534 1 + G T UCEC 232577531 + 232577511 232577551 41 TAGGATGACGATGTCGATACCAAGAAGCAGAAGACCGACGA TAGGATGACGATGTCGATACCAATAAGCAGAAGACCGACGA < 41bp 1 0.53210318325851 1 0.179170936346054 experiment 0.935793633482979 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232577531 chr2:232577534 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_43172 0 0 1 0 1 Ribosome 1 0.500231643924207 1 0.999536712151585 hm5C_site_42183 DeepMRMD:1;iRNA_m5C:0.999536712151585 42184 chr5 34949742 34949742 1 + G A UCEC 34949743 + 34949723 34949763 41 GAGAGAAGAGATGGAGAGAGCGAGCACAAATGTGCCAAAAT GAGAGAAGAGATGGAGAGAACGAGCACAAATGTGCCAAAAT < 41bp 1 0.502801975104081 1 0.824424207210541 experiment 0.994396049791839 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34949743 chr5:34949742 nonsynonymous SNV 0.000 0 20 hm5C_associated_SNPs_43173 0 0 0 0 2 Cytosol 1 0.500231643926823 0.351151585578918 0.999536712146353 hm5C_site_42184 DeepMRMD:0.351151585578918;iRNA_m5C:0.999536712146353 42185 chr1 109801266 109801266 1 + G A UCEC 109801267 + 109801247 109801287 41 CGTACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCA CGTACAGCGGGACACCGACACCCCCGGGGGCCACATCCTCA < 41bp 1 0.0801665755780234 1 0.0383744835853577 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801267 chr1:109801266 nonsynonymous SNV 0.062 1 20 hm5C_associated_SNPs_43174 0 0 1 0 0 Endoplasmic reticulum 1 0.500231654886404 1 0.999536690227191 hm5C_site_42185 DeepMRMD:1;iRNA_m5C:0.999536690227191 42186 chr1 109801266 109801266 1 + G A UCEC 109801268 + 109801248 109801288 41 GTACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCAA GTACAGCGGGACACCGACACCCCCGGGGGCCACATCCTCAA < 41bp 1 0.359314776300339 1 0.360740780830383 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801268 chr1:109801266 nonsynonymous SNV 0.062 1 19 hm5C_associated_SNPs_43175 0 0 1 0 0 Endoplasmic reticulum 1 0.500230849579429 1 0.999538300841142 hm5C_site_42186 DeepMRMD:1;iRNA_m5C:0.999538300841142 42187 chr1 109801266 109801266 1 + G A UCEC 109801269 + 109801249 109801289 41 TACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCAAC TACAGCGGGACACCGACACCCCCGGGGGCCACATCCTCAAC < 41bp 1 0.402532149504855 1 0.43428236246109 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801269 chr1:109801266 nonsynonymous SNV 0.062 1 18 hm5C_associated_SNPs_43176 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164730943 1 0.999536705381139 hm5C_site_42187 DeepMRMD:1;iRNA_m5C:0.999536705381139 42188 chr1 109801266 109801266 1 + G A UCEC 109801270 + 109801250 109801290 41 ACAGCGGGACACCGACGCCCCCGGGGGCCACATCCTCAACG ACAGCGGGACACCGACACCCCCGGGGGCCACATCCTCAACG < 41bp 1 0.480113197163401 1 0.482181340456009 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801270 chr1:109801266 nonsynonymous SNV 0.062 1 17 hm5C_associated_SNPs_43177 0 0 1 0 0 Endoplasmic reticulum 1 0.500231418589273 1 0.999537162821454 hm5C_site_42188 DeepMRMD:1;iRNA_m5C:0.999537162821454 42189 chr1 249211762 249211762 1 + G T UCEC 249211767 + 249211747 249211787 41 AGGAGCTTGGATCTAGGAGGCAGTATGGTAATAAAATTTGT AGGAGCTTGGATCTATGAGGCAGTATGGTAATAAAATTTGT < 41bp 1 0.505264561093761 1 0.233372658491135 experiment 0.989470877812477 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249211767 chr1:249211762 stopgain 0.819 0 16 hm5C_associated_SNPs_43179 0 0 0 0 0 Cytosol 1 0.500231643921103 1 0.999536712157795 hm5C_site_42189 DeepMRMD:1;iRNA_m5C:0.999536712157795 42190 chr1 12009963 12009963 1 + G T UCEC 12009955 + 12009935 12009975 41 GAGGATCTGGTCATTCTCTTCGCAGACAGGTAGGTGGGTCA GAGGATCTGGTCATTCTCTTCGCAGACATGTAGGTGGGTCA < 41bp 1 0.513179909748125 1 0.829998016357422 experiment 0.97364018050375 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12009955 chr1:12009963 nonsynonymous SNV 0.980 3 29 hm5C_associated_SNPs_43181 0 0 1 0 1 Nucleus 1 0.500231822461294 0.340003967285156 0.999536355077413 hm5C_site_42190 DeepMRMD:0.340003967285156;iRNA_m5C:0.999536355077413 42191 chr11 45924000 45924000 1 + G T UCEC 45923984 + 45923964 45924004 41 GAGCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCG GAGCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACATATCG < 41bp 1 0.0635950392533403 1 0.0760771930217743 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923984 chr11:45924000 nonsynonymous SNV 0.817 3 37 hm5C_associated_SNPs_43183 0 0 1 0 1 Endoplasmic reticulum 1 0.500231642059667 1 0.999536715880667 hm5C_site_42191 DeepMRMD:1;iRNA_m5C:0.999536715880667 42192 chr11 45924000 45924000 1 + G T UCEC 45923985 + 45923965 45924005 41 AGCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGA AGCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACATATCGA < 41bp 1 0.0620719126179912 1 0.0857259631156921 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923985 chr11:45924000 nonsynonymous SNV 0.817 3 36 hm5C_associated_SNPs_43184 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_42192 DeepMRMD:1;iRNA_m5C:0.999536712157814 42193 chr11 45924000 45924000 1 + G T UCEC 45923986 + 45923966 45924006 41 GCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAG GCTGCCCCCCCAGAGCGGCCCCGCCCCCACCACATATCGAG < 41bp 1 0.055655346214421 1 0.0861335098743439 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923986 chr11:45924000 nonsynonymous SNV 0.817 3 35 hm5C_associated_SNPs_43185 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643856424 1 0.999536712287152 hm5C_site_42193 DeepMRMD:1;iRNA_m5C:0.999536712287152 42194 chr11 45924000 45924000 1 + G T UCEC 45923987 + 45923967 45924007 41 CTGCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGG CTGCCCCCCCAGAGCGGCCCCGCCCCCACCACATATCGAGG < 41bp 1 0.118240530514913 1 0.262667953968048 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923987 chr11:45924000 nonsynonymous SNV 0.817 3 34 hm5C_associated_SNPs_43186 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_42194 DeepMRMD:1;iRNA_m5C:0.999536712157815 42195 chr11 45924000 45924000 1 + G T UCEC 45923989 + 45923969 45924009 41 GCCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCA GCCCCCCCAGAGCGGCCCCGCCCCCACCACATATCGAGGCA < 41bp 1 0.0716952567764008 1 0.227397888898849 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923989 chr11:45924000 nonsynonymous SNV 0.817 3 32 hm5C_associated_SNPs_43187 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643958557 1 0.999536712082887 hm5C_site_42195 DeepMRMD:1;iRNA_m5C:0.999536712082887 42196 chr11 45924000 45924000 1 + G T UCEC 45923990 + 45923970 45924010 41 CCCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCAC CCCCCCCAGAGCGGCCCCGCCCCCACCACATATCGAGGCAC < 41bp 1 0.279477010378277 1 0.632889688014984 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923990 chr11:45924000 nonsynonymous SNV 0.817 3 31 hm5C_associated_SNPs_43188 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921089 0.734220623970032 0.999536712157823 hm5C_site_42196 DeepMRMD:0.734220623970032;iRNA_m5C:0.999536712157823 42197 chr11 45924000 45924000 1 + G T UCEC 45923991 + 45923971 45924011 41 CCCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCACC CCCCCCAGAGCGGCCCCGCCCCCACCACATATCGAGGCACC < 41bp 1 0.0669437884468998 1 0.0982395708560944 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923991 chr11:45924000 nonsynonymous SNV 0.817 3 30 hm5C_associated_SNPs_43189 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_42197 DeepMRMD:1;iRNA_m5C:0.999536712157815 42198 chr11 45924000 45924000 1 + G T UCEC 45923992 + 45923972 45924012 41 CCCCCAGAGCGGCCCCGCCCCCACCACAGATCGAGGCACCT CCCCCAGAGCGGCCCCGCCCCCACCACATATCGAGGCACCT < 41bp 1 0.041603739793537 1 0.149656772613525 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45923992 chr11:45924000 nonsynonymous SNV 0.817 3 29 hm5C_associated_SNPs_43190 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_42198 DeepMRMD:1;iRNA_m5C:0.999536712157815 42199 chr5 43649356 43649356 1 + G T UCEC 43649344 + 43649324 43649364 41 TGGCTGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACC TGGCTGGCATTGTGGGGTATCATACCGTCTGGTGAGTGACC < 41bp 1 0.0932521013708609 1 0.0896016955375671 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43649344 chr5:43649356 stopgain 0.995 1 33 hm5C_associated_SNPs_43192 0 0 1 0 1 Endoplasmic reticulum 1 0.50023144858181 1 0.99953710283638 hm5C_site_42199 DeepMRMD:1;iRNA_m5C:0.99953710283638 42200 chr5 43649356 43649356 1 + G T UCEC 43649348 + 43649328 43649368 41 TGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACCCCTG TGGCATTGTGGGGTATCATACCGTCTGGTGAGTGACCCCTG < 41bp 1 0.247263719360223 1 0.465058088302612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43649348 chr5:43649356 stopgain 0.995 1 29 hm5C_associated_SNPs_43193 0 0 1 0 1 Endoplasmic reticulum 1 0.50023504170258 1 0.99952991659484 hm5C_site_42200 DeepMRMD:1;iRNA_m5C:0.99952991659484 42201 chr1 11779750 11779750 1 + C A UCEC 11779741 + 11779721 11779761 41 AACGGCGACCAGGGATCCTTCATCAACGTCTAGCGGCCCCG AACGGCGACCAGGGATCCTTCATCAACGTATAGCGGCCCCG < 41bp 1 0.622862692862011 1 0.212047785520554 experiment 0.754274614275977 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11779741 chr1:11779750 synonymous SNV . 0 30 hm5C_associated_SNPs_43194 0 0 0 0 0 exosome 1 0.500231643921319 1 0.999536712157362 hm5C_site_42201 DeepMRMD:1;iRNA_m5C:0.999536712157362 42202 chr5 231085 231085 1 + G T UCEC 231073 + 231053 231093 41 CCATGATCACCAGGGCAGGCCTTCCTTGCCAGGACCTAGAG CCATGATCACCAGGGCAGGCCTTCCTTGCCAGTACCTAGAG < 41bp 1 0.236902818720444 1 0.181193768978119 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:231073 chr5:231085 nonsynonymous SNV 0.864 3 33 hm5C_associated_SNPs_43195 0 0 1 0 2 Nucleus 1 0.500231644296955 1 0.999536711406091 hm5C_site_42202 DeepMRMD:1;iRNA_m5C:0.999536711406091 42203 chr8 22054840 22054840 1 + G A UCEC 22054839 + 22054819 22054859 41 TTCTGTGGTTCTGAGAAGCCCGAGGTCATCACCTCCCAGTA TTCTGTGGTTCTGAGAAGCCCAAGGTCATCACCTCCCAGTA < 41bp 1 0.689630504202621 1 0.792672634124756 experiment 0.620738991594758 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054839 chr8:22054840 nonsynonymous SNV 0.984 2 22 hm5C_associated_SNPs_43196 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.414654731750488 0.999536712157815 hm5C_site_42203 DeepMRMD:0.414654731750488;iRNA_m5C:0.999536712157815 42204 chr8 22054840 22054840 1 + G A UCEC 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCCAAGGTCATCACCTCCCAGTACAACAACATGCGCG < 41bp 1 0.126339833362491 1 0.190434902906418 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054840 nonsynonymous SNV 0.984 2 8 hm5C_associated_SNPs_43197 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921202 1 0.999536712157595 hm5C_site_42204 DeepMRMD:1;iRNA_m5C:0.999536712157595 42205 chr17 42426655 42426655 1 + C T UCEC 42426663 + 42426643 42426683 41 CAGCTACAGCTGCTGCCGTCCCCTTCTGGTGAGTGCCCCTC CAGCTACAGCTGTTGCCGTCCCCTTCTGGTGAGTGCCCCTC < 41bp 1 0.0972477081564693 1 0.0524072647094727 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42426663 chr17:42426655 synonymous SNV . 0 13 hm5C_associated_SNPs_43199 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921095 1 0.99953671215781 hm5C_site_42205 DeepMRMD:1;iRNA_m5C:0.99953671215781 42206 chr17 42426655 42426655 1 + C T UCEC 42426664 + 42426644 42426684 41 AGCTACAGCTGCTGCCGTCCCCTTCTGGTGAGTGCCCCTCA AGCTACAGCTGTTGCCGTCCCCTTCTGGTGAGTGCCCCTCA < 41bp 1 0.0637974004451894 1 0.243425726890564 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRN ENSG00000030582 CDS Human protein_coding chr17:42426664 chr17:42426655 synonymous SNV . 0 12 hm5C_associated_SNPs_43200 0 0 1 0 1 Endoplasmic reticulum 1 0.500231687957472 1 0.999536624085057 hm5C_site_42206 DeepMRMD:1;iRNA_m5C:0.999536624085057 42207 chr11 76829255 76829255 1 + G A UCEC 76829251 + 76829231 76829271 41 TTCACGGACATCATCAAGTGCCGCGTGATCAACACATCCCA TTCACGGACATCATCAAGTGCCGCATGATCAACACATCCCA < 41bp 1 0.304920052275485 1 0.0710746347904205 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76829251 chr11:76829255 nonsynonymous SNV 0.954 1 25 hm5C_associated_SNPs_43201 0 0 0 0 1 Endoplasmic reticulum 1 0.5002318741713 1 0.9995362516574 hm5C_site_42207 DeepMRMD:1;iRNA_m5C:0.9995362516574 42208 chr2 128861522 128861522 1 + G T UCEC 128861524 + 128861504 128861544 41 AGTGAGTTTTTAGCAGAAGACAGTCAAGAGAAATTTTGGAA AGTGAGTTTTTAGCAGAATACAGTCAAGAGAAATTTTGGAA < 41bp 1 0.0788602613324061 1 0.175419926643372 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UGGT1 ENSG00000136731 CDS Human protein_coding chr2:128861524 chr2:128861522 nonsynonymous SNV 1.000 2 19 hm5C_associated_SNPs_43202 0 0 1 0 2 Nucleus 1 0.500231643929967 1 0.999536712140066 hm5C_site_42208 DeepMRMD:1;iRNA_m5C:0.999536712140066 42209 chr12 94072698 94072698 1 + G T UCEC 94072701 + 94072681 94072721 41 TCAATGCTCAAACCACAGGCCTCCGGAAAACAATGCTCCTG TCAATGCTCAAACCACATGCCTCCGGAAAACAATGCTCCTG < 41bp 1 0.606631329563114 1 0.709474086761475 experiment 0.786737340873771 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CRADD ENSG00000169372 CDS Human protein_coding chr12:94072701 chr12:94072698 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_43203 0 0 1 0 0 Ribosome 1 0.500231643925968 0.58105182647705 0.999536712148064 hm5C_site_42209 DeepMRMD:0.58105182647705;iRNA_m5C:0.999536712148064 42210 chr12 94072698 94072698 1 + G T UCEC 94072703 + 94072683 94072723 41 AATGCTCAAACCACAGGCCTCCGGAAAACAATGCTCCTGCT AATGCTCAAACCACATGCCTCCGGAAAACAATGCTCCTGCT < 41bp 1 0.627553901547225 1 0.622136473655701 experiment 0.744892196905551 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRADD ENSG00000169372 CDS Human protein_coding chr12:94072703 chr12:94072698 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_43204 0 0 1 0 0 Ribosome 1 0.500231643921533 0.755727052688598 0.999536712156934 hm5C_site_42210 DeepMRMD:0.755727052688598;iRNA_m5C:0.999536712156934 42211 chr5 125820108 125820108 1 + G T UCEC 125820118 + 125820098 125820138 41 CCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGG CCATGCGACATAATCCCAAACAGTTCTGAATGTCTCCAAGG < 41bp 1 0.268633573356638 1 0.176048666238785 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125820118 chr5:125820108 stopgain 0.963 1 11 hm5C_associated_SNPs_43205 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42211 DeepMRMD:1;iRNA_m5C:0.999536712157815 42212 chr22 39440147 39440147 1 + C T UCEC 39440154 + 39440134 39440174 41 CCTTTGGCCAGTGCGCCCCACCACATGGGACAGCGCAGGTC CCTTTGGCCAGTGTGCCCCACCACATGGGACAGCGCAGGTC < 41bp 1 0.373998496087221 1 0.226268947124481 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39440154 chr22:39440147 synonymous SNV . 0 14 hm5C_associated_SNPs_43206 0 0 0 0 1 Nucleus 1 0.500231643919725 1 0.999536712160549 hm5C_site_42212 DeepMRMD:1;iRNA_m5C:0.999536712160549 42213 chr12 6637436 6637436 1 + G A UCEC 6637450 + 6637430 6637470 41 ACTGGGGATCTGGCCATCCGCTTTCCCAATCTGGTGGACCC ACTGGGAATCTGGCCATCCGCTTTCCCAATCTGGTGGACCC < 41bp 1 0.0991492820367898 1 0.0578273236751556 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6637450 chr12:6637436 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_43207 0 0 1 0 1 Nucleus 1 0.500231643924352 1 0.999536712151296 hm5C_site_42213 DeepMRMD:1;iRNA_m5C:0.999536712151296 42214 chr16 56362599 56362599 1 + C A UCEC 56362604 + 56362584 56362624 41 AGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCATGA AGACACCGAGCCCTTATCTGCAGAGCTGCTTTCTGCCATGA < 41bp 1 0.499746880884792 1 0.730260848999023 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56362604 chr16:56362599 nonsynonymous SNV 0.998 2 16 hm5C_associated_SNPs_43208 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643935303 0.539478302001954 0.999536712129393 hm5C_site_42214 DeepMRMD:0.539478302001954;iRNA_m5C:0.999536712129393 42215 chr5 162905778 162905778 1 + C A UCEC 162905772 + 162905752 162905792 41 AAAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT AAAAGTATGACAGTATGGTGCAAAGCATTGAAGATGTTACT < 41bp 1 0.348666148390411 1 0.239560157060623 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162905772 chr5:162905778 nonsynonymous SNV 0.004 2 27 hm5C_associated_SNPs_43209 0 0 1 0 2 Cytosol 1 0.500231642578947 1 0.999536714842106 hm5C_site_42215 DeepMRMD:1;iRNA_m5C:0.999536714842106 42216 chr12 51449973 51449973 1 + G T UCEC 51449969 + 51449949 51449989 41 CAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAAC CAATACATGATATCTTGGCTCTGATAGAGTGTTTCTCTAAC < 41bp 1 0.394407649489981 1 0.0911135971546173 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449969 chr12:51449973 nonsynonymous SNV 0.290 2 25 hm5C_associated_SNPs_43210 0 0 1 0 2 chromatin 1 0.500231644092946 1 0.999536711814108 hm5C_site_42216 DeepMRMD:1;iRNA_m5C:0.999536711814108 42217 chr22 42032192 42032192 1 + G A UCEC 42032200 + 42032180 42032220 41 TTCTATGGTACCGAGAAAGACAAAAATTCAGTGAATTTTAA TTCTATGGTACCAAGAAAGACAAAAATTCAGTGAATTTTAA < 41bp 1 0.444387374916222 1 0.368028342723846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42032200 chr22:42032192 nonsynonymous SNV 0.675 0 13 hm5C_associated_SNPs_43211 0 0 1 0 1 Cytosol 1 0.50023164427723 1 0.999536711445539 hm5C_site_42217 DeepMRMD:1;iRNA_m5C:0.999536711445539 Blood protein levels 42218 chr14 102499719 102499719 1 + C T UCEC 102499701 + 102499681 102499721 41 GACAACCAGCAGAAGGCCAACGAGGTGGAGCAGATGATCCG GACAACCAGCAGAAGGCCAACGAGGTGGAGCAGATGATTCG < 41bp 1 0.279291463480954 1 0.724425196647644 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499701 chr14:102499719 synonymous SNV . 0 39 hm5C_associated_SNPs_43212 0 0 1 0 0 Cytosol 1 0.500231643918655 0.551149606704712 0.999536712162689 hm5C_site_42218 DeepMRMD:0.551149606704712;iRNA_m5C:0.999536712162689 42219 chr14 102499719 102499719 1 + C T UCEC 102499720 + 102499700 102499740 41 ACGAGGTGGAGCAGATGATCCGAGACCTGGAAGCCAGCATC ACGAGGTGGAGCAGATGATTCGAGACCTGGAAGCCAGCATC < 41bp 1 0.576232463983952 1 0.858805179595947 experiment 0.847535072032096 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102499720 chr14:102499719 synonymous SNV . 0 20 hm5C_associated_SNPs_43213 0 0 1 0 0 Cytosol 1 0.500231643907291 0.282389640808106 0.999536712185418 hm5C_site_42219 DeepMRMD:0.282389640808106;iRNA_m5C:0.999536712185418 42220 chr7 74103466 74103466 1 + G A UCEC 74103486 + 74103466 74103506 41 GCCCAAGTTGCAATGTCCACCCTCCCCGTTGAAGATGAGGA ACCCAAGTTGCAATGTCCACCCTCCCCGTTGAAGATGAGGA < 41bp 1 0.0277625092314064 1 0.113113313913345 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF2I ENSG00000077809 CDS Human other chr7:74103486 chr7:74103466 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_43214 0 0 1 0 2 Cytosol 1 0.500231643921946 1 0.999536712156107 hm5C_site_42220 DeepMRMD:1;iRNA_m5C:0.999536712156107 42221 chr14 73407009 73407009 1 + C T UCEC 73406995 + 73406975 73407015 41 TTGCTCCCTGGACATAACAACTGCAACCCCCTGACGAAAGA TTGCTCCCTGGACATAACAACTGCAACCCCCTGATGAAAGA < 41bp 1 0.691673929516314 1 0.39204216003418 experiment 0.616652140967372 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73406995 chr14:73407009 nonsynonymous SNV 0.761 4 35 hm5C_associated_SNPs_43215 0 0 1 0 3 chromatin 1 0.500231653501126 1 0.999536692997747 hm5C_site_42221 DeepMRMD:1;iRNA_m5C:0.999536692997747 42222 chr12 132326250 132326250 1 + A G UCEC 132326257 + 132326237 132326277 41 GTGGCCGCTGCACACTCCATCATGCGGCCGTACTACCAGGG GTGGCCGCTGCACGCTCCATCATGCGGCCGTACTACCAGGG < 41bp 1 0.314107616788804 1 0.798640131950378 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132326257 chr12:132326250 nonsynonymous SNV 0.081 0 14 hm5C_associated_SNPs_43216 0 0 0 0 2 Cytosol 1 0.500231643912608 0.402719736099244 0.999536712174784 hm5C_site_42222 DeepMRMD:0.402719736099244;iRNA_m5C:0.999536712174784 42223 chrX 69639595 69639595 1 + A G UCEC 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGGATTGGGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT < 41bp 1 0.479989600795829 1 0.200018614530563 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639595 nonsynonymous SNV 0.990 2 9 hm5C_associated_SNPs_43217 0 0 0 0 2 chromatin 1 0.500231643088326 1 0.999536713823349 hm5C_site_42223 DeepMRMD:1;iRNA_m5C:0.999536713823349 42224 chr17 34958427 34958427 1 + A G UCEC 34958431 + 34958411 34958451 41 TGTCTCCTGGCTCTGCAGGCCGCCCGCCGCTCTGTGGCCCG TGTCTCCTGGCTCTGCGGGCCGCCCGCCGCTCTGTGGCCCG < 41bp 1 0.405088989461051 1 0.159519553184509 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MRM1 ENSG00000129282 CDS Human other chr17:34958431 chr17:34958427 nonsynonymous SNV 0.960 0 17 hm5C_associated_SNPs_43218 0 0 1 0 0 nucleolus 1 0.500231643921091 1 0.999536712157819 hm5C_site_42224 DeepMRMD:1;iRNA_m5C:0.999536712157819 42225 chr19 42373816 42373816 1 + C G UCEC 42373808 + 42373788 42373828 41 CAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTAAG CAGGGACAAAGAGATCTGGACAGAATCGGCGGACAGGTAAG < 41bp 1 0.626334527380212 1 0.33413553237915 experiment 0.747330945239577 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373808 chr19:42373816 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_43219 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_42225 DeepMRMD:1;iRNA_m5C:0.999536712157816 42226 chr17 41154751 41154751 1 + G T UCEC 41154768 + 41154748 41154788 41 CCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA CCTTCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA < 41bp 1 0.251997754711993 1 0.35940757393837 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154768 chr17:41154751 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_43220 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42226 DeepMRMD:1;iRNA_m5C:0.999536712157815 42227 chr9 112705582 112705582 1 + C T UCEC 112705590 + 112705570 112705610 41 TGAGCTTGTGTCCGGGAGGCCGGTCTCAGACACCACAGAGC TGAGCTTGTGTCTGGGAGGCCGGTCTCAGACACCACAGAGC < 41bp 1 0.0981264083000103 1 0.429842174053192 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALM2 ENSG00000157654;ENSG00000243444 CDS Human other chr9:112705590 chr9:112705582 synonymous SNV . 0 13 hm5C_associated_SNPs_43222 0 0 0 0 1 exosome 1 0.500231681467841 1 0.999536637064318 hm5C_site_42227 DeepMRMD:1;iRNA_m5C:0.999536637064318 42228 chr19 18255963 18255963 1 + A G UCEC 18255949 + 18255929 18255969 41 CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGG CGGCCCCCCATCGTTATCCACAGCTCTGGCAAGAGGTACGG < 41bp 1 0.285561300860581 1 0.0597706437110901 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255949 chr19:18255963 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_43223 0 0 0 0 1 Cytosol 1 0.50023164392114 1 0.999536712157719 hm5C_site_42228 DeepMRMD:1;iRNA_m5C:0.999536712157719 42229 chr11 46394434 46394434 1 + G A UCEC 46394414 + 46394394 46394434 41 GTACTGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGG GTACTGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGA < 41bp 1 0.11194305252363 1 0.0396721363067627 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394414 chr11:46394434 synonymous SNV . 0 41 hm5C_associated_SNPs_43224 0 0 1 0 1 Ribosome 1 0.500231643921071 1 0.999536712157858 hm5C_site_42229 DeepMRMD:1;iRNA_m5C:0.999536712157858 42230 chr11 46394434 46394434 1 + G A UCEC 46394418 + 46394398 46394438 41 TGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGGGTAA TGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGAGTAA < 41bp 1 0.0681544129005573 1 0.319894909858704 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394418 chr11:46394434 synonymous SNV . 0 37 hm5C_associated_SNPs_43225 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42230 DeepMRMD:1;iRNA_m5C:0.999536712157815 42231 chr14 93119172 93119172 1 + C T UCEC 93119189 + 93119169 93119209 41 ACGCTTTCCTCTCCAACAACCGCAAGCTGTACAAGAAGGTG ACGTTTTCCTCTCCAACAACCGCAAGCTGTACAAGAAGGTG < 41bp 1 0.394208330917766 1 0.260524243116379 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93119189 chr14:93119172 nonsynonymous SNV 0.134 1 4 hm5C_associated_SNPs_43226 0 0 1 0 0 cytosol 1 0.500231634344927 1 0.999536731310147 hm5C_site_42231 DeepMRMD:1;iRNA_m5C:0.999536731310147 42232 chr7 72397373 72397373 1 + A G UCEC 72397355 + 72397335 72397375 41 TGTAGACCAGAGCAGATAATCAGCTCAACACTGTCCTCACC TGTAGACCAGAGCAGATAATCAGCTCAACACTGTCCTCGCC < 41bp 1 0.414159250918824 1 0.871983051300049 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72397355 chr7:72397373 synonymous SNV . 0 39 hm5C_associated_SNPs_43227 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645182912 0.256033897399902 0.999536709634177 hm5C_site_42232 DeepMRMD:0.256033897399902;iRNA_m5C:0.999536709634177 42233 chrX 41088615 41088615 1 + A C UCEC 41088595 + 41088575 41088615 41 GAATCACTATCAAAAAAGAGCATACCAGTGTATAAAATGTA GAATCACTATCAAAAAAGAGCATACCAGTGTATAAAATGTC < 41bp 1 0.00632462332199859 1 0.103228688240051 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41088595 chrX:41088615 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_43229 0 0 1 0 1 Nucleus 1 0.50023164392104 1 0.99953671215792 hm5C_site_42233 DeepMRMD:1;iRNA_m5C:0.99953671215792 42234 chr19 55817714 55817714 1 + G A UCEC 55817715 + 55817695 55817735 41 GTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGACATCAGCTC GTCTTCCAAAAGCCCGTCCACTTCCAGGTGGACATCAGCTC < 41bp 1 0.143171157933951 1 0.118593096733093 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817715 chr19:55817714 nonsynonymous SNV 0.994 3 20 hm5C_associated_SNPs_43230 0 0 1 0 1 chromatin 1 0.500231643921254 1 0.999536712157492 hm5C_site_42234 DeepMRMD:1;iRNA_m5C:0.999536712157492 42235 chr5 151183555 151183555 1 + G A UCEC 151183550 + 151183530 151183570 41 CGCCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGG CGCCTTCGGGGACCTGGAGGCCCTCAAGGTGGGCTGGGTGG < 41bp 1 0.259934844109219 1 0.369104892015457 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control G3BP1 ENSG00000145907 CDS Human protein_coding chr5:151183550 chr5:151183555 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_43232 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42235 DeepMRMD:1;iRNA_m5C:0.999536712157815 42236 chr1 26109103 26109103 1 + G A UCEC 26109121 + 26109101 26109141 41 AAGCCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC AAACCGGTTTCTCTGGGATCCAAGACGTGTACAGTAGCACC < 41bp 1 0.588974489469736 1 0.755324840545654 experiment 0.822051021060529 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26109121 chr1:26109103 nonsynonymous SNV 0.821 0 3 hm5C_associated_SNPs_43233 0 0 0 0 2 exosome 1 0.500231643921086 0.489350318908692 0.999536712157828 hm5C_site_42236 DeepMRMD:0.489350318908692;iRNA_m5C:0.999536712157828 42237 chr19 17273842 17273842 1 + C T UCEC 17273851 + 17273831 17273871 41 TTTGAAGACTTCGAGAGGAACAGCTTTGAGCAGTTCTGCAT TTTGAAGACTTTGAGAGGAACAGCTTTGAGCAGTTCTGCAT < 41bp 1 0.287346950680078 1 0.120919525623322 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17273851 chr19:17273842 synonymous SNV . 0 12 hm5C_associated_SNPs_43234 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_42237 DeepMRMD:1;iRNA_m5C:0.999536712157815 42238 chr19 36034688 36034688 1 + A G UCEC 36034699 - 36034679 36034719 41 GTGTAGGCAAGGATGCCAGCCATGGGCCCCTTGGCTGCTGC GTGTAGGCAAGGATGCCAGCCATGGGCCCCTCGGCTGCTGC < 41bp 1 0.436300955421026 1 0.651051700115204 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36034699 chr19:36034688 nonsynonymous SNV 0.998 0 32 hm5C_associated_SNPs_43235 0 0 1 0 0 chromatin 1 0.500231643893531 0.697896599769592 0.999536712212938 hm5C_site_42238 DeepMRMD:0.697896599769592;iRNA_m5C:0.999536712212938 42239 chrX 24755780 24755780 1 + G T UCEC 24755775 + 24755755 24755795 41 ATGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTG ATGGGTTTGAACTGGAAGTACTACTTCAGAGAATTAATGTG < 41bp 1 0.146114023010246 1 0.110177397727966 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLA1 ENSG00000101868 CDS Human protein_coding chrX:24755775 chrX:24755780 synonymous SNV . 0 26 hm5C_associated_SNPs_43236 0 0 1 0 1 chromatin 1 0.500231643921155 1 0.99953671215769 hm5C_site_42239 DeepMRMD:1;iRNA_m5C:0.99953671215769 42240 chr15 74918195 74918195 1 + G A UCEC 74918204 + 74918184 74918224 41 ACATGTGCATCGCCTTTGAGCTCCTGGGCAAGAACACCTTT ACATGTGCATCACCTTTGAGCTCCTGGGCAAGAACACCTTT < 41bp 1 0.378589999800979 1 0.169330179691315 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74918204 chr15:74918195 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_43237 0 0 1 0 1 Nucleus 1 0.500231643393045 1 0.99953671321391 hm5C_site_42240 DeepMRMD:1;iRNA_m5C:0.99953671321391 42241 chrX 73044089 73044089 1 + A G UCEC 73044072 - 73044052 73044092 41 TGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATTGTG TGGCTGTCTGAAGAATGCCACTATAGTAGTTATCTATTGTG < 41bp 1 0.107569168281138 1 0.116167902946472 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044072 chrX:73044089 . . 0 4 hm5C_associated_SNPs_43238 0 0 1 0 0 unknown 1 0.500240599367972 1 0.999518801264055 hm5C_site_42241 DeepMRMD:1;iRNA_m5C:0.999518801264055 42242 chrX 73044089 73044089 1 + A G UCEC 73044074 - 73044054 73044094 41 ATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATTG ATTGGCTGTCTGAAGAATGCCACTATAGTAGTTATCTATTG < 41bp 1 0.284263856789555 1 0.136016666889191 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044074 chrX:73044089 . . 0 6 hm5C_associated_SNPs_43239 0 0 1 0 0 unknown 1 0.500231846453179 1 0.999536307093642 hm5C_site_42242 DeepMRMD:1;iRNA_m5C:0.999536307093642 42243 chrX 73044089 73044089 1 + A G UCEC 73044075 - 73044055 73044095 41 GATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATT GATTGGCTGTCTGAAGAATGCCACTATAGTAGTTATCTATT < 41bp 1 0.0719109012507337 1 0.0276032984256744 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044075 chrX:73044089 . . 0 7 hm5C_associated_SNPs_43240 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_42243 DeepMRMD:1;iRNA_m5C:0.999536712157815 42244 chrX 73044089 73044089 1 + A G UCEC 73044085 - 73044065 73044105 41 ATACGCAAGGGATTGGTTGTCTGAAGAATGCCACTATAGTA ATACGCAAGGGATTGGCTGTCTGAAGAATGCCACTATAGTA < 41bp 1 0.52854180144539 1 0.583789587020874 experiment 0.94291639710922 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044085 chrX:73044089 . . 0 17 hm5C_associated_SNPs_43241 0 0 1 0 0 unknown 1 0.500231656244627 0.832420825958252 0.999536687510745 hm5C_site_42244 DeepMRMD:0.832420825958252;iRNA_m5C:0.999536687510745 42245 chr2 71368480 71368480 1 + A C UCEC 71368493 + 71368473 71368513 41 GAACAGGAGTACATCAAACTCAACCAGGTGAGGAAGCCTGT GAACAGGCGTACATCAAACTCAACCAGGTGAGGAAGCCTGT < 41bp 1 0.365308348845073 1 0.079357922077179 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71368493 chr2:71368480 nonsynonymous SNV 0.989 4 8 hm5C_associated_SNPs_43242 0 0 1 0 1 Cytosol 1 0.50023161878326 1 0.999536762433479 hm5C_site_42245 DeepMRMD:1;iRNA_m5C:0.999536762433479 42246 chr4 48835483 48835483 1 + A C UCEC 48835494 + 48835474 48835514 41 AATGATGAAAGCTTCTGGTTCAGATGTGAGTTCAATTTTCT AATGATGAACGCTTCTGGTTCAGATGTGAGTTCAATTTTCT < 41bp 1 0.339590232094135 1 0.472832143306732 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48835494 chr4:48835483 nonsynonymous SNV 0.984 3 10 hm5C_associated_SNPs_43244 0 0 1 0 2 Ribosome 1 0.500231640025334 1 0.999536719949333 hm5C_site_42246 DeepMRMD:1;iRNA_m5C:0.999536719949333 42247 chr5 40853287 40853287 1 + G T UCEC 40853307 + 40853287 40853327 41 GAAGGAAGAACATGGAGGGCCTTCAAGCTGCCCTCCAGGAA TAAGGAAGAACATGGAGGGCCTTCAAGCTGCCCTCCAGGAA < 41bp 1 0.530655825406011 1 0.111104756593704 experiment 0.938688349187977 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CARD6 ENSG00000132357 CDS Human protein_coding chr5:40853307 chr5:40853287 nonsynonymous SNV 0.000 1 1 hm5C_associated_SNPs_43245 0 0 0 0 0 exosome 1 0.500231643921097 1 0.999536712157807 hm5C_site_42247 DeepMRMD:1;iRNA_m5C:0.999536712157807 42248 chr15 63111769 63111769 1 + C T UCEC 63111780 + 63111760 63111800 41 TTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCA TTCTCCAAGTGAGTCGCCGGCGCTGTGACAGAGCTCATCCA < 41bp 1 0.148089175656651 1 0.34698075056076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63111780 chr15:63111769 stopgain 0.692 1 10 hm5C_associated_SNPs_43246 0 0 0 0 2 Nucleus 1 0.50023164392696 1 0.99953671214608 hm5C_site_42248 DeepMRMD:1;iRNA_m5C:0.99953671214608 42249 chr1 186946857 186946857 1 + G T UCEC 186946875 + 186946855 186946895 41 AAGATTGCCCAACCATCATCCACTTTGTTCTGGCCAACATC AATATTGCCCAACCATCATCCACTTTGTTCTGGCCAACATC < 41bp 1 0.194041300059054 1 0.374133229255676 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186946875 chr1:186946857 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_43247 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_42249 DeepMRMD:1;iRNA_m5C:0.999536712157815 42250 chr6 31929384 31929384 1 + G A UCEC 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTCAGGAGCAGTGGACCATCCCTGTGGAC < 41bp 1 0.270588734295636 1 0.409623652696609 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929384 nonsynonymous SNV 0.928 3 27 hm5C_associated_SNPs_43248 0 0 1 0 2 chromatin 1 0.500225996554384 1 0.999548006891231 hm5C_site_42250 DeepMRMD:1;iRNA_m5C:0.999548006891231 42251 chr11 68213990 68213990 1 + G A UCEC 68213986 + 68213966 68214006 41 CTCTTCAAACATTCCGGCCACTGCGAGACCGTACAGGTAGG CTCTTCAAACATTCCGGCCACTGCAAGACCGTACAGGTAGG < 41bp 1 0.475166643476831 1 0.460545748472214 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68213986 chr11:68213990 synonymous SNV . 0 25 hm5C_associated_SNPs_43249 0 0 1 0 2 Endoplasmic reticulum 1 0.500231594116719 1 0.999536811766562 hm5C_site_42251 DeepMRMD:1;iRNA_m5C:0.999536811766562 42252 chrX 47774356 47774356 1 + G T UCEC 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAAGCCTTCCCAGAGGATAATTTCTGGGAA < 41bp 1 0.219689739956459 1 0.597618460655212 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774356 nonsynonymous SNV 0.703 0 29 hm5C_associated_SNPs_43250 0 0 0 0 1 cytosol 1 0.500231643921092 0.804763078689576 0.999536712157816 hm5C_site_42252 DeepMRMD:0.804763078689576;iRNA_m5C:0.999536712157816 42253 chr6 160481681 160481681 1 + G A UCEC 160481661 + 160481641 160481681 41 AAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCCG AAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCCA < 41bp 1 0.162425975805561 1 0.305353164672852 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160481661 chr6:160481681 nonsynonymous SNV 0.952 0 41 hm5C_associated_SNPs_43251 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_42253 DeepMRMD:1;iRNA_m5C:0.999536712157815 42254 chr5 118529625 118529625 1 + G A UCEC 118529637 + 118529617 118529657 41 TAGCATCAGATTTCCATCTCCAGGAACATTCTAATTCAAAT TAGCATCAAATTTCCATCTCCAGGAACATTCTAATTCAAAT < 41bp 1 0.227615393526621 1 0.820639491081238 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DMXL1 ENSG00000172869 CDS Human protein_coding chr5:118529637 chr5:118529625 nonsynonymous SNV 0.989 0 9 hm5C_associated_SNPs_43252 0 0 1 0 1 Cytosol 1 0.502102142213018 0.358721017837524 0.995795715573963 hm5C_site_42254 DeepMRMD:0.358721017837524;iRNA_m5C:0.995795715573963 42255 chr1 156202162 156202162 1 + G A UCEC 156202172 + 156202152 156202192 41 TGCAGCCTGCGATGACACAGCAAATCTATGACAAGTTTATA TGCAGCCTGCAATGACACAGCAAATCTATGACAAGTTTATA < 41bp 1 0.0943916493808916 1 0.161862403154373 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156202172 chr1:156202162 synonymous SNV . 0 11 hm5C_associated_SNPs_43253 0 0 1 1 2 unknown 1 0.500232784109788 1 0.999534431780424 hm5C_site_42255 DeepMRMD:1;iRNA_m5C:0.999534431780424 42256 chr14 71444258 71444258 1 + A C UCEC 71444269 + 71444249 71444289 41 AGCTATAAAAGTGAGCAGACCAGCTCAACTCACATAGAGAG AGCTATAAACGTGAGCAGACCAGCTCAACTCACATAGAGAG < 41bp 1 0.194707344133328 1 0.335364460945129 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71444269 chr14:71444258 nonsynonymous SNV 0.971 4 10 hm5C_associated_SNPs_43254 0 0 1 0 0 Endoplasmic reticulum 1 0.500231654702399 1 0.999536690595201 hm5C_site_42256 DeepMRMD:1;iRNA_m5C:0.999536690595201 42257 chrX 110951614 110951614 1 + C T UCEC 110951619 + 110951599 110951639 41 TCTTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAACATATC TCTTTCGGGCCATTTTGGAGCAGGTAAAAGGAAAACATATC < 41bp 1 0.523663303685945 1 0.824633598327637 experiment 0.95267339262811 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110951619 chrX:110951614 nonsynonymous SNV 0.979 2 16 hm5C_associated_SNPs_43255 0 0 1 0 1 Cytosol 1 0.500231643921092 0.350732803344726 0.999536712157815 hm5C_site_42257 DeepMRMD:0.350732803344726;iRNA_m5C:0.999536712157815 42258 chrX 73046152 73046152 1 + A C UCEC 73046132 - 73046112 73046152 41 TTCAGTCCTTTCTTTTGACCCCAGAAGCCCTAGACTGAGAA GTCAGTCCTTTCTTTTGACCCCAGAAGCCCTAGACTGAGAA < 41bp 1 0.141184151893687 1 0.302256166934967 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046132 chrX:73046152 . . 0 1 hm5C_associated_SNPs_43256 0 0 1 0 0 unknown 1 0.500231643921422 1 0.999536712157156 hm5C_site_42258 DeepMRMD:1;iRNA_m5C:0.999536712157156 Waist circumference 42259 chr1 214814423 214814423 1 + A G UCEC 214814421 + 214814401 214814441 41 AGAACAAGGAAAAAGAGCTGCAACTTTTAAATGATAAGGTA AGAACAAGGAAAAAGAGCTGCAGCTTTTAAATGATAAGGTA < 41bp 1 0.24977429467557 1 0.397276133298874 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214814421 chr1:214814423 synonymous SNV . 0 23 hm5C_associated_SNPs_43257 0 0 1 0 0 Nucleus 1 0.500231560741161 1 0.999536878517678 hm5C_site_42259 DeepMRMD:1;iRNA_m5C:0.999536878517678 42260 chr19 48259792 48259792 1 + G A UCEC 48259799 + 48259779 48259819 41 CTGTAGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAG CTGTAGCCCGAGGACAACATCCTTCGAGACCGGTTCAAGAG < 41bp 1 0.0407402933362894 1 0.107763946056366 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259799 chr19:48259792 nonsynonymous SNV 0.965 4 14 hm5C_associated_SNPs_43258 0 0 1 0 2 unknown 1 0.500231686881503 1 0.999536626236994 hm5C_site_42260 DeepMRMD:1;iRNA_m5C:0.999536626236994 42261 chr19 48259792 48259792 1 + G A UCEC 48259803 + 48259783 48259823 41 AGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAGCTTC AGCCCGAGGACAACATCCTTCGAGACCGGTTCAAGAGCTTC < 41bp 1 0.690413364686265 1 0.894723773002625 experiment 0.61917327062747 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259803 chr19:48259792 nonsynonymous SNV 0.965 4 10 hm5C_associated_SNPs_43259 0 0 1 0 2 unknown 1 0.500231643471193 0.21055245399475 0.999536713057614 hm5C_site_42261 DeepMRMD:0.21055245399475;iRNA_m5C:0.999536713057614 42262 chr7 128119315 128119315 1 + G A UCEC 128119323 + 128119303 128119343 41 CGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATT CGAATTCCCTGAACTGGCACCTAGCCAAAATCAAAATCATT < 41bp 1 0.0950073244663258 1 0.103072345256805 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METTL2B ENSG00000165055 CDS Human protein_coding chr7:128119323 chr7:128119315 synonymous SNV . 0 13 hm5C_associated_SNPs_43260 0 0 1 0 0 Ribosome 1 0.500231643921027 1 0.999536712157946 hm5C_site_42262 DeepMRMD:1;iRNA_m5C:0.999536712157946 42263 chr6 4937919 4937919 1 + C T UCEC 4937916 + 4937896 4937936 41 TTGACTTTATTTATTTTATACGACGTCTGACAGATGACAGG TTGACTTTATTTATTTTATACGATGTCTGACAGATGACAGG < 41bp 1 0.202440168185086 1 0.155318737030029 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4937916 chr6:4937919 nonsynonymous SNV 0.965 1 24 hm5C_associated_SNPs_43261 0 0 1 0 1 Cytoplasm 1 0.500231707925068 1 0.999536584149864 hm5C_site_42263 DeepMRMD:1;iRNA_m5C:0.999536584149864 42264 chrX 100667727 100667727 1 + G T UCEC 100667738 + 100667718 100667758 41 GGCTATAATGATGGATATGGCTTTGGGTCTGATAGATTTGG GGCTATAATTATGGATATGGCTTTGGGTCTGATAGATTTGG < 41bp 1 0.275252543509054 1 0.0553068220615387 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HNRNPH2 ENSG00000126945 CDS Human protein_coding chrX:100667738 chrX:100667727 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_43262 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42264 DeepMRMD:1;iRNA_m5C:0.999536712157815 42265 chr1 55452088 55452088 1 + A C UCEC 55452081 + 55452061 55452101 41 CACCTCTCCAGAGACCTGTACTACCTCACTGTGGAGTCCTC CACCTCTCCAGAGACCTGTACTACCTCCCTGTGGAGTCCTC < 41bp 1 0.119463685682962 1 0.061031699180603 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55452081 chr1:55452088 nonsynonymous SNV 0.675 3 28 hm5C_associated_SNPs_43263 0 0 0 0 1 Cytosol 1 0.500231644498618 1 0.999536711002764 hm5C_site_42265 DeepMRMD:1;iRNA_m5C:0.999536711002764 42266 chrX 149896165 149896165 1 + T G UCEC 149896183 + 149896163 149896203 41 ATTTTATCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG ATGTTATCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG < 41bp 1 0.269246012152963 1 0.0332295000553131 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149896183 chrX:149896165 nonsynonymous SNV 0.953 2 3 hm5C_associated_SNPs_43264 0 0 1 0 2 Ribosome 1 0.500231643920594 1 0.999536712158811 hm5C_site_42266 DeepMRMD:1;iRNA_m5C:0.999536712158811 42267 chr12 101705858 101705858 1 + G T UCEC 101705877 + 101705857 101705897 41 AGATGAAAGTTGGGAGCAGACCCAGGAAGGAGATGTTGGAG ATATGAAAGTTGGGAGCAGACCCAGGAAGGAGATGTTGGAG < 41bp 1 0.372117665471451 1 0.470059394836426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101705877 chr12:101705858 nonsynonymous SNV 0.615 1 2 hm5C_associated_SNPs_43265 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42267 DeepMRMD:1;iRNA_m5C:0.999536712157815 42268 chr11 117152058 117152058 1 + C T UCEC 117152053 + 117152033 117152073 41 AACTCCCCCAACACTGGAGACAGTTCGTTCCAAACAGGAGT AACTCCCCCAACACTGGAGACAGTTTGTTCCAAACAGGAGT < 41bp 1 0.106330517568011 1 0.147689044475555 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152053 chr11:117152058 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_43266 0 0 1 0 2 chromatin 1 0.50023164395106 1 0.999536712097881 hm5C_site_42268 DeepMRMD:1;iRNA_m5C:0.999536712097881 42269 chrX 105921476 105921476 1 + G T UCEC 105921458 + 105921438 105921478 41 AAAGTGGAAGTCTATTTGCACAAGATTTATAGTCCAGAGAA AAAGTGGAAGTCTATTTGCACAAGATTTATAGTCCAGATAA < 41bp 1 0.688327668206147 1 0.169796854257584 experiment 0.623344663587706 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105921458 chrX:105921476 nonsynonymous SNV 0.152 0 39 hm5C_associated_SNPs_43267 0 0 1 0 0 nucleus 1 0.500231643777475 1 0.999536712445049 hm5C_site_42269 DeepMRMD:1;iRNA_m5C:0.999536712445049 42270 chr7 128445497 128445497 1 + C A UCEC 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATGGATTTATTAGAGCCTGATCCTGAAATGCAGTTGT < 41bp 1 0.173849745807327 1 0.191786736249924 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445497 nonsynonymous SNV 0.997 2 13 hm5C_associated_SNPs_43268 0 0 1 0 2 chromatin 1 0.500231643920698 1 0.999536712158605 hm5C_site_42270 DeepMRMD:1;iRNA_m5C:0.999536712158605 42271 chr7 128445497 128445497 1 + C A UCEC 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TGGATTTATTAGAGCCTGATCCTGAAATGCAGTTGTTACGG < 41bp 1 0.367808869165758 1 0.372789978981018 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445497 nonsynonymous SNV 0.997 2 8 hm5C_associated_SNPs_43269 0 0 1 0 2 chromatin 1 0.500231654682131 1 0.999536690635738 hm5C_site_42271 DeepMRMD:1;iRNA_m5C:0.999536690635738 42272 chr1 118477158 118477158 1 + A C UCEC 118477159 + 118477139 118477179 41 GCCCCTCCCCAGATGGGCTACACTTAGCTGTTGGGTATGAG GCCCCTCCCCAGATGGGCTCCACTTAGCTGTTGGGTATGAG < 41bp 1 0.15352055178063 1 0.0796947479248047 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WDR3 ENSG00000065183 CDS Human protein_coding chr1:118477159 chr1:118477158 synonymous SNV . 0 20 hm5C_associated_SNPs_43270 0 0 1 0 1 Nucleus 1 0.500231634389602 1 0.999536731220796 hm5C_site_42272 DeepMRMD:1;iRNA_m5C:0.999536731220796 42273 chr12 132516567 132516567 1 + A G UCEC 132516568 + 132516548 132516588 41 CTCCACTCACAGCCGTACCACAGGTATAAACCTTGTAGAGG CTCCACTCACAGCCGTACCGCAGGTATAAACCTTGTAGAGG < 41bp 1 0.20195211155832 1 0.255713403224945 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132516568 chr12:132516567 nonsynonymous SNV 0.069 0 20 hm5C_associated_SNPs_43271 0 0 1 0 1 Cytosol 1 0.500232002132569 1 0.999535995734861 hm5C_site_42273 DeepMRMD:1;iRNA_m5C:0.999535995734861 42274 chrX 100880687 100880687 1 + A G UCEC 100880681 + 100880661 100880701 41 TGACTGTTACTAATGAGTATCAGCACATGCTTGCTAATTCC TGACTGTTACTAATGAGTATCAGCACGTGCTTGCTAATTCC < 41bp 1 0.654754806496102 1 0.718309283256531 experiment 0.690490387007797 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880681 chrX:100880687 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_43272 0 0 1 0 0 Endoplasmic reticulum 1 0.500231837106788 0.563381433486938 0.999536325786424 hm5C_site_42274 DeepMRMD:0.563381433486938;iRNA_m5C:0.999536325786424 42275 chrX 100880687 100880687 1 + A G UCEC 100880686 + 100880666 100880706 41 GTTACTAATGAGTATCAGCACATGCTTGCTAATTCCATTTC GTTACTAATGAGTATCAGCACGTGCTTGCTAATTCCATTTC < 41bp 1 0.383833291840413 1 0.0518956184387207 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880686 chrX:100880687 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_43273 0 0 1 0 0 Endoplasmic reticulum 1 0.500298030397812 1 0.999403939204377 hm5C_site_42275 DeepMRMD:1;iRNA_m5C:0.999403939204377 42276 chr7 66703394 66703394 1 + G A UCEC 66703395 + 66703375 66703415 41 TGGATCAAAAACGTTCAGCGCAAAGGATTATATGGCCAGAA TGGATCAAAAACGTTCAGCACAAAGGATTATATGGCCAGAA < 41bp 1 0.390442107742389 1 0.124445527791977 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66703395 chr7:66703394 nonsynonymous SNV 0.937 0 20 hm5C_associated_SNPs_43274 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921439 1 0.999536712157123 hm5C_site_42276 DeepMRMD:1;iRNA_m5C:0.999536712157123 42277 chr16 29989126 29989126 1 + G T UCEC 29989108 + 29989088 29989128 41 GCCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGA GCCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAATGA < 41bp 1 0.578324013290867 1 0.597264051437378 experiment 0.843351973418267 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989108 chr16:29989126 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_43275 0 0 1 0 1 Nucleus 1 0.50023164389982 0.805471897125244 0.99953671220036 hm5C_site_42277 DeepMRMD:0.805471897125244;iRNA_m5C:0.99953671220036 42278 chr16 29989126 29989126 1 + G T UCEC 29989109 + 29989089 29989129 41 CCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGAC CCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAATGAC < 41bp 1 0.450288415698673 1 0.610597908496857 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989109 chr16:29989126 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_43276 0 0 1 0 1 Nucleus 1 0.500231643911147 0.778804183006286 0.999536712177706 hm5C_site_42278 DeepMRMD:0.778804183006286;iRNA_m5C:0.999536712177706 42279 chr9 38396515 38396515 1 + A G UCEC 38396501 + 38396481 38396521 41 GGTGCGGCCATCGCCCAGCACGTGGATGTTGACAAAGTTGC GGTGCGGCCATCGCCCAGCACGTGGATGTTGACAGAGTTGC < 41bp 1 0.555860020665685 1 0.361317276954651 experiment 0.88827995866863 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALDH1B1 ENSG00000137124 CDS Human protein_coding chr9:38396501 chr9:38396515 nonsynonymous SNV 0.690 4 35 hm5C_associated_SNPs_43278 0 0 1 0 0 Cytosol 1 0.500233773638152 1 0.999532452723697 hm5C_site_42279 DeepMRMD:1;iRNA_m5C:0.999532452723697 42280 chr11 67354016 67354016 1 + A G UCEC 67353999 + 67353979 67354019 41 CAAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACC CAAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGGACC < 41bp 1 0.0183728782882829 1 0.0999182462692261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67353999 chr11:67354016 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_43279 0 0 1 0 0 Cytosol 1 0.5002316438992 1 0.999536712201599 hm5C_site_42280 DeepMRMD:1;iRNA_m5C:0.999536712201599 42281 chr11 67354016 67354016 1 + A G UCEC 67354000 + 67353980 67354020 41 AAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGAACCT AAGCTCAAGGCCTTCCTGGCCTCCCCTGAGTACGTGGACCT < 41bp 1 0.259086506352345 1 0.155122190713882 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67354000 chr11:67354016 nonsynonymous SNV 0.999 1 37 hm5C_associated_SNPs_43280 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42281 DeepMRMD:1;iRNA_m5C:0.999536712157815 42282 chr2 202899668 202899668 1 + T G UCEC 202899657 + 202899637 202899677 41 GGTGAAGGTGCAGTGTTCTCCCGAACTCCGCTTTTTCTTAT GGTGAAGGTGCAGTGTTCTCCCGAACTCCGCGTTTTCTTAT < 41bp 1 0.654513412221557 1 0.383309543132782 experiment 0.690973175556885 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FZD7 ENSG00000155760 CDS Human protein_coding chr2:202899657 chr2:202899668 nonsynonymous SNV 0.899 3 32 hm5C_associated_SNPs_43281 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644320384 1 0.999536711359233 hm5C_site_42282 DeepMRMD:1;iRNA_m5C:0.999536711359233 42283 chr11 4159538 4159538 1 + A C UCEC 4159553 + 4159533 4159573 41 GAAGAAGAGAAGGAGAGGAACACAGCAGCCATGGTGTGCTC GAAGACGAGAAGGAGAGGAACACAGCAGCCATGGTGTGCTC < 41bp 1 0.586804537179162 1 0.352235853672028 experiment 0.826390925641676 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4159553 chr11:4159538 nonsynonymous SNV 0.998 1 6 hm5C_associated_SNPs_43282 0 0 1 0 0 Nucleus 1 0.500231609749858 1 0.999536780500284 hm5C_site_42283 DeepMRMD:1;iRNA_m5C:0.999536780500284 42284 chr5 17275336 17275336 1 + A C UCEC 17275338 + 17275318 17275358 41 ACTCCAAGATGGGAGGCAAGCTCAGCAAGAAGAAGAAGGGC ACTCCAAGATGGGAGGCACGCTCAGCAAGAAGAAGAAGGGC < 41bp 1 0.652242324741596 1 0.185456037521362 experiment 0.695515350516808 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BASP1 ENSG00000176788 CDS Human protein_coding chr5:17275338 chr5:17275336 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_43283 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42284 DeepMRMD:1;iRNA_m5C:0.999536712157815 42285 chr1 39926400 39926400 1 + C T UCEC 39926397 + 39926377 39926417 41 CTCGAGTGATGGATTTCTTCCGGCGCATTGATAAGGACCAG CTCGAGTGATGGATTTCTTCCGGTGCATTGATAAGGACCAG < 41bp 1 0.135744780244119 1 0.864873886108398 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39926397 chr1:39926400 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_43285 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.270252227783204 0.999536712157815 hm5C_site_42285 DeepMRMD:0.270252227783204;iRNA_m5C:0.999536712157815 42286 chr6 1390653 1390653 1 + C T UCEC 1390666 + 1390646 1390686 41 ACGAGTGCTTCATCAAGCTGCCTAAGGGCCTCGGGCGGCCC ACGAGTGTTTCATCAAGCTGCCTAAGGGCCTCGGGCGGCCC < 41bp 1 0.157346840340737 1 0.13671401143074 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOXF2 ENSG00000137273 CDS Human protein_coding chr6:1390666 chr6:1390653 synonymous SNV . 0 8 hm5C_associated_SNPs_43286 0 0 1 0 0 exosome 1 0.500231643920879 1 0.999536712158243 hm5C_site_42286 DeepMRMD:1;iRNA_m5C:0.999536712158243 42287 chr6 25551213 25551213 1 + G T UCEC 25551227 + 25551207 25551247 41 CGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCTAT CGACAATACTTGATTCATGCCAGCACCGAAAAGATTTCTAT < 41bp 1 0.386097734793043 1 0.424963653087616 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25551227 chr6:25551213 nonsynonymous SNV 0.995 3 7 hm5C_associated_SNPs_43287 0 0 1 0 1 unknown 1 0.500231643528315 1 0.999536712943369 hm5C_site_42287 DeepMRMD:1;iRNA_m5C:0.999536712943369 42288 chr1 145304594 145304594 1 + A G UCEC 145304596 + 145304576 145304616 41 GGAAGACAAAGTCGACTCAACTCTCATTGGCTCATCCTCTC GGAAGACAAAGTCGACTCGACTCTCATTGGCTCATCCTCTC < 41bp 1 0.0713325026659989 1 0.0440313518047333 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NBPF10 ENSG00000163386 CDS Human other chr1:145304596 chr1:145304594 synonymous SNV . 0 19 hm5C_associated_SNPs_43288 0 0 0 0 0 chromatin 1 0.50023182898937 1 0.99953634202126 hm5C_site_42288 DeepMRMD:1;iRNA_m5C:0.99953634202126 42289 chr12 123892122 123892122 1 + G T UCEC 123892103 + 123892083 123892123 41 AATCACAGCAAATGTGGGAACTGCCAAACCAAACTGCACGA AATCACAGCAAATGTGGGAACTGCCAAACCAAACTGCACTA < 41bp 1 0.471639095560333 1 0.39312732219696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123892103 chr12:123892122 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_43289 0 0 1 0 0 Cytosol 1 0.500231643970463 1 0.999536712059075 hm5C_site_42289 DeepMRMD:1;iRNA_m5C:0.999536712059075 42290 chr17 62223767 62223767 1 + T C UCEC 62223763 + 62223743 62223783 41 GTCAATCTGCAGCGCTAGAGCATGTGCTTGCGCATAACTGG GTCAATCTGCAGCGCTAGAGCATGCGCTTGCGCATAACTGG < 41bp 1 0.50662541833127 1 0.369872868061066 experiment 0.98674916333746 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223763 chr17:62223767 . . 0 25 hm5C_associated_SNPs_43290 0 0 1 0 0 unknown 1 0.500231643475608 1 0.999536713048785 hm5C_site_42290 DeepMRMD:1;iRNA_m5C:0.999536713048785 42291 chr17 62223767 62223767 1 + T C UCEC 62223769 + 62223749 62223789 41 CTGCAGCGCTAGAGCATGTGCTTGCGCATAACTGGGGCCGC CTGCAGCGCTAGAGCATGCGCTTGCGCATAACTGGGGCCGC < 41bp 1 0.346318186491137 1 0.135264933109283 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223769 chr17:62223767 . . 0 19 hm5C_associated_SNPs_43291 0 0 1 0 0 unknown 1 0.500231737842163 1 0.999536524315674 hm5C_site_42291 DeepMRMD:1;iRNA_m5C:0.999536524315674 42292 chr17 62223767 62223767 1 + T C UCEC 62223787 + 62223767 62223807 41 TGCTTGCGCATAACTGGGGCCGCCTGGCCTCCCGCGGGCGG CGCTTGCGCATAACTGGGGCCGCCTGGCCTCCCGCGGGCGG < 41bp 1 0.287344947616032 1 0.064817488193512 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223787 chr17:62223767 . . 0 1 hm5C_associated_SNPs_43292 0 0 1 0 0 unknown 1 0.500231643921107 1 0.999536712157786 hm5C_site_42292 DeepMRMD:1;iRNA_m5C:0.999536712157786 42293 chrX 9661249 9661249 1 + G T UCEC 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG CGGTTTTGCAAGAATATGGACGGAATATGGTGAGTTCTGTG < 41bp 1 0.436505798687261 1 0.235132962465286 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661249 nonsynonymous SNV 0.910 5 26 hm5C_associated_SNPs_43293 0 0 0 0 2 Cytosol 1 0.500231635377961 1 0.999536729244077 hm5C_site_42293 DeepMRMD:1;iRNA_m5C:0.999536729244077 42294 chr12 125603198 125603198 1 + G T UCEC 125603189 + 125603169 125603209 41 TCCCTCCTGTCTTTGCAGGTCGGCTGGATGATGTGGAACTG TCCCTCCTGTCTTTGCAGGTCGGCTGGATTATGTGGAACTG < 41bp 1 0.540615298014164 1 0.443799167871475 experiment 0.918769403971672 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AACS ENSG00000081760 CDS Human protein_coding chr12:125603189 chr12:125603198 nonsynonymous SNV 1.000 4 30 hm5C_associated_SNPs_43294 0 0 0 0 1 Ribosome 1 0.500231657457784 1 0.999536685084432 hm5C_site_42294 DeepMRMD:1;iRNA_m5C:0.999536685084432 42295 chr2 24888650 24888650 1 + A C UCEC 24888633 + 24888613 24888653 41 AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATAAATA AACAGCACGGAAAAGAGGCGCAGGGAGCAAGAAAATACATA < 41bp 1 0.32602207521723 1 0.600242674350739 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24888633 chr2:24888650 nonsynonymous SNV 0.997 5 38 hm5C_associated_SNPs_43295 0 0 1 0 1 Cytosol 1 0.500231643921092 0.799514651298522 0.999536712157816 hm5C_site_42295 DeepMRMD:0.799514651298522;iRNA_m5C:0.999536712157816 42296 chr11 35684884 35684884 1 + G A UCEC 35684864 + 35684844 35684884 41 ACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGGGG ACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGGGA < 41bp 1 0.240858368197367 1 0.478824317455292 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684864 chr11:35684884 synonymous SNV . 0 41 hm5C_associated_SNPs_43296 0 0 1 0 0 Ribosome 1 0.500231643926698 1 0.999536712146603 hm5C_site_42296 DeepMRMD:1;iRNA_m5C:0.999536712146603 42297 chr7 101837150 101837150 1 + T C UCEC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCGCCCGAGGGCGCTGGGACA < 41bp 1 0.0443910122429204 1 0.214567929506302 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837150 nonsynonymous SNV 0.416 1 24 hm5C_associated_SNPs_43297 0 0 1 0 2 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42297 DeepMRMD:1;iRNA_m5C:0.999536712157815 42298 chr7 101837150 101837150 1 + T C UCEC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCGCCCGAGGGCGCTGGGACAC < 41bp 1 0.215849959436886 1 0.61100161075592 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837150 nonsynonymous SNV 0.416 1 23 hm5C_associated_SNPs_43298 0 0 1 0 2 Exosome 1 0.500231644581551 0.77799677848816 0.999536710836898 hm5C_site_42298 DeepMRMD:0.77799677848816;iRNA_m5C:0.999536710836898 42299 chrX 70776888 70776888 1 + A G UCEC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTGTACGCGTGCCATCCAAATTAATCCT < 41bp 1 0.226573646715895 1 0.0445112287998199 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776888 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_43299 0 0 1 0 2 Nucleus 1 0.500227277220587 1 0.999545445558825 hm5C_site_42299 DeepMRMD:1;iRNA_m5C:0.999545445558825 42300 chr1 166818706 166818706 1 + A G UCEC 166818712 + 166818692 166818732 41 CGCCCAGGAAATGAACATTCCAGAGAAAGGGTTCAAGGCAA CGCCCAGGAAATGAGCATTCCAGAGAAAGGGTTCAAGGCAA < 41bp 1 0.604483644798704 1 0.389917701482773 experiment 0.791032710402592 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POGK ENSG00000143157 CDS Human protein_coding chr1:166818712 chr1:166818706 nonsynonymous SNV 0.999 1 15 hm5C_associated_SNPs_43300 0 0 1 0 0 Nucleus 1 0.500231643921089 1 0.999536712157822 hm5C_site_42300 DeepMRMD:1;iRNA_m5C:0.999536712157822 42301 chr1 214814550 214814550 1 + G A UCEC 214814530 + 214814510 214814550 41 GCTACAACTTTTATCCGAAACCCTAAGCTTGGAGAAGAAAG GCTACAACTTTTATCCGAAACCCTAAGCTTGGAGAAGAAAA < 41bp 1 0.0947743553853225 1 0.0872783362865448 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214814530 chr1:214814550 nonsynonymous SNV 0.979 2 41 hm5C_associated_SNPs_43301 0 0 1 0 0 Nucleus 1 0.500231644093192 1 0.999536711813616 hm5C_site_42301 DeepMRMD:1;iRNA_m5C:0.999536711813616 42302 chr1 214814550 214814550 1 + G A UCEC 214814537 + 214814517 214814557 41 CTTTTATCCGAAACCCTAAGCTTGGAGAAGAAAGAAATGAG CTTTTATCCGAAACCCTAAGCTTGGAGAAGAAAAAAATGAG < 41bp 1 0.155278552463184 1 0.431474626064301 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214814537 chr1:214814550 nonsynonymous SNV 0.979 2 34 hm5C_associated_SNPs_43302 0 0 1 0 0 Nucleus 1 0.5002316439175 1 0.999536712165 hm5C_site_42302 DeepMRMD:1;iRNA_m5C:0.999536712165 42303 chr7 2411435 2411435 1 + T G UCEC 2411420 + 2411400 2411440 41 TTTTTTAAACAGGGTGTTGTCACAAATTTTGAAATTTTCCG TTTTTTAAACAGGGTGTTGTCACAAATTTTGAAATGTTCCG < 41bp 1 0.672183510511598 1 0.491657346487045 experiment 0.655632978976803 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2411420 chr7:2411435 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_43303 0 0 1 0 0 Ribosome 1 0.500231643932501 1 0.999536712134997 hm5C_site_42303 DeepMRMD:1;iRNA_m5C:0.999536712134997 42304 chr11 4142895 4142895 1 + A G UCEC 4142908 + 4142888 4142928 41 TTCCTTGATTTAAAGAAGAACACAGGAAAGGAAGAGCAGCG TTCCTTGGTTTAAAGAAGAACACAGGAAAGGAAGAGCAGCG < 41bp 1 0.449058282251959 1 0.371017724275589 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142908 chr11:4142895 nonsynonymous SNV 0.997 2 8 hm5C_associated_SNPs_43304 0 0 1 0 0 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_42304 DeepMRMD:1;iRNA_m5C:0.999536712157818 Chemerin levels 42305 chr11 70181778 70181778 1 + G T UCEC 70181768 + 70181748 70181788 41 ATGAGAGGCTTCAACTTCATCTTAAAGAGAGAATGGCTGCT ATGAGAGGCTTCAACTTCATCTTAAAGAGATAATGGCTGCT < 41bp 1 0.229950504901971 1 0.279085218906403 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70181768 chr11:70181778 nonsynonymous SNV 0.994 3 31 hm5C_associated_SNPs_43305 0 0 1 0 1 Ribosome 1 0.500231643898754 1 0.999536712202492 hm5C_site_42305 DeepMRMD:1;iRNA_m5C:0.999536712202492 42306 chr1 198233309 198233309 1 + G T UCEC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATTCATTGAAGATAATTAACTAAA < 41bp 1 0.12808162700761 1 0.368995100259781 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233309 stopgain 1.000 1 34 hm5C_associated_SNPs_43306 0 0 1 0 2 Nucleus 1 0.500231643919395 1 0.99953671216121 hm5C_site_42306 DeepMRMD:1;iRNA_m5C:0.99953671216121 42307 chr9 128678165 128678165 1 + A C UCEC 128678180 + 128678160 128678200 41 CCCAGATCAGACAAATCTATCACACAGAACTGGAGAAATAT CCCAGCTCAGACAAATCTATCACACAGAACTGGAGAAATAT < 41bp 1 0.194283998111301 1 0.123647302389145 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PBX3 ENSG00000167081 CDS Human protein_coding chr9:128678180 chr9:128678165 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_43307 0 0 0 0 1 Nucleus 1 0.500231635627033 1 0.999536728745934 hm5C_site_42307 DeepMRMD:1;iRNA_m5C:0.999536728745934 42308 chr6 36175108 36175108 1 + A C UCEC 36175115 + 36175095 36175135 41 GCAGGATGAGAAGACAAGTGCAGTGAAGGAGGAGCTGAAGT GCAGGATGAGAAGCCAAGTGCAGTGAAGGAGGAGCTGAAGT < 41bp 1 0.277711225686123 1 0.704143822193146 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36175115 chr6:36175108 nonsynonymous SNV 0.998 2 14 hm5C_associated_SNPs_43308 0 0 1 0 1 chromatin 1 0.500227578097021 0.591712355613708 0.999544843805959 hm5C_site_42308 DeepMRMD:0.591712355613708;iRNA_m5C:0.999544843805959 42309 chr20 31021424 31021424 1 + G A UCEC 31021436 + 31021416 31021456 41 CAGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCT CAGCACCCAACCTGGAGGGTCCCGAATTCCCAGTTGAGTCT < 41bp 1 0.477273940054987 1 0.13561549782753 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021436 chr20:31021424 nonsynonymous SNV 0.000 0 9 hm5C_associated_SNPs_43309 0 0 1 0 0 Nucleus 1 0.500231644576481 1 0.999536710847038 hm5C_site_42309 DeepMRMD:1;iRNA_m5C:0.999536710847038 42310 chr20 31021424 31021424 1 + G A UCEC 31021437 + 31021417 31021457 41 AGCACCCGACCTGGAGGGTCCCGAATTCCCAGTTGAGTCTG AGCACCCAACCTGGAGGGTCCCGAATTCCCAGTTGAGTCTG < 41bp 1 0.504180431221843 1 0.264307677745819 experiment 0.991639137556314 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021437 chr20:31021424 nonsynonymous SNV 0.000 0 8 hm5C_associated_SNPs_43310 0 0 1 0 0 Nucleus 1 0.5002316439209 1 0.9995367121582 hm5C_site_42310 DeepMRMD:1;iRNA_m5C:0.9995367121582 42311 chr12 64810527 64810527 1 + A C UCEC 64810521 + 64810501 64810541 41 GCTTTCAAGTACTGGAACATCAAGTTAAATACAAGTAAGGC GCTTTCAAGTACTGGAACATCAAGTTCAATACAAGTAAGGC < 41bp 1 0.505933701090385 1 0.545646131038666 experiment 0.98813259781923 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control XPOT ENSG00000184575 CDS Human protein_coding chr12:64810521 chr12:64810527 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_43311 0 0 1 0 2 Ribosome 1 0.500231644416325 0.908707737922668 0.999536711167351 hm5C_site_42311 DeepMRMD:0.908707737922668;iRNA_m5C:0.999536711167351 42312 chr3 50006056 50006056 1 + G T UCEC 50006076 + 50006056 50006096 41 GATTACAGAAGCATGGAGTACCGTGATGTGGATCATAGGCT TATTACAGAAGCATGGAGTACCGTGATGTGGATCATAGGCT < 41bp 1 0.141108897822132 1 0.114535629749298 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBM6 ENSG00000004534 CDS Human protein_coding chr3:50006076 chr3:50006056 nonsynonymous SNV 0.998 4 1 hm5C_associated_SNPs_43312 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42312 DeepMRMD:1;iRNA_m5C:0.999536712157815 42313 chr1 198222180 198222180 1 + G A UCEC 198222182 + 198222162 198222202 41 AATTACAGAAGGCCTTACGACCGGATATGGGCTATAATACA AATTACAGAAGGCCTTACAACCGGATATGGGCTATAATACA < 41bp 1 0.633175392452268 1 0.840398550033569 experiment 0.733649215095465 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEK7 ENSG00000151414 CDS Human protein_coding chr1:198222182 chr1:198222180 nonsynonymous SNV 0.999 1 19 hm5C_associated_SNPs_43313 0 0 1 0 1 Nucleus 1 0.500231643921091 0.319202899932862 0.999536712157817 hm5C_site_42313 DeepMRMD:0.319202899932862;iRNA_m5C:0.999536712157817 42314 chr1 198222180 198222180 1 + G A UCEC 198222183 + 198222163 198222203 41 ATTACAGAAGGCCTTACGACCGGATATGGGCTATAATACAT ATTACAGAAGGCCTTACAACCGGATATGGGCTATAATACAT < 41bp 1 0.546737383178731 1 0.705528020858765 experiment 0.906525233642538 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEK7 ENSG00000151414 CDS Human protein_coding chr1:198222183 chr1:198222180 nonsynonymous SNV 0.999 1 18 hm5C_associated_SNPs_43314 0 0 1 0 1 Nucleus 1 0.500231644228757 0.58894395828247 0.999536711542486 hm5C_site_42314 DeepMRMD:0.58894395828247;iRNA_m5C:0.999536711542486 42315 chr7 129950688 129950688 1 + A G UCEC 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAGGTG < 41bp 1 0.586253277385692 1 0.0540202856063843 experiment 0.827493445228617 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950688 synonymous SNV . 0 38 hm5C_associated_SNPs_43315 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643915837 1 0.999536712168326 hm5C_site_42315 DeepMRMD:1;iRNA_m5C:0.999536712168326 42316 chr7 129950688 129950688 1 + A G UCEC 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAGGTGG < 41bp 1 0.110756363686911 1 0.0379899144172668 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950688 synonymous SNV . 0 37 hm5C_associated_SNPs_43316 0 0 0 0 1 Endoplasmic reticulum 1 0.50023164395978 1 0.999536712080439 hm5C_site_42316 DeepMRMD:1;iRNA_m5C:0.999536712080439 42317 chr13 77570192 77570192 1 + C T UCEC 77570189 + 77570169 77570209 41 TGGTGTAATCAAGGCGCTGCCTGCTTTTTTGAGGGAATTGA TGGTGTAATCAAGGCGCTGCCTGTTTTTTTGAGGGAATTGA < 41bp 1 0.422000691616503 1 0.0906981825828552 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570189 chr13:77570192 synonymous SNV . 0 24 hm5C_associated_SNPs_43317 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921106 1 0.999536712157788 hm5C_site_42317 DeepMRMD:1;iRNA_m5C:0.999536712157788 42318 chr2 109367738 109367738 1 + A C UCEC 109367752 + 109367732 109367772 41 CACATAATGGTAGTCTTCAGCACCTTACTTGGCTTGGCTTA CACATACTGGTAGTCTTCAGCACCTTACTTGGCTTGGCTTA < 41bp 1 0.273647211195271 1 0.410289138555527 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109367752 chr2:109367738 nonsynonymous SNV 1.000 0 7 hm5C_associated_SNPs_43318 0 0 0 0 1 Nucleus 1 0.500231643716477 1 0.999536712567046 hm5C_site_42318 DeepMRMD:1;iRNA_m5C:0.999536712567046 42319 chr14 102484870 102484870 1 + G T UCEC 102484854 + 102484834 102484874 41 GCCTCCCTCACACAGATCTACGGCACCTTCAACCGCGCCAT GCCTCCCTCACACAGATCTACGGCACCTTCAACCGCTCCAT < 41bp 1 0.352639361492788 1 0.297518134117126 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484854 chr14:102484870 nonsynonymous SNV 0.985 4 37 hm5C_associated_SNPs_43319 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42319 DeepMRMD:1;iRNA_m5C:0.999536712157815 42320 chr14 102484870 102484870 1 + G T UCEC 102484872 + 102484852 102484892 41 TACGGCACCTTCAACCGCGCCATGCTGAGGCTCATTCCATC TACGGCACCTTCAACCGCTCCATGCTGAGGCTCATTCCATC < 41bp 1 0.063619357258663 1 0.0661492347717285 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484872 chr14:102484870 nonsynonymous SNV 0.985 4 19 hm5C_associated_SNPs_43320 0 0 1 0 2 Cytosol 1 0.500231643388893 1 0.999536713222213 hm5C_site_42320 DeepMRMD:1;iRNA_m5C:0.999536713222213 42321 chr11 764325 764325 1 + G T UCEC 764334 + 764314 764354 41 CACCTGGATGAGAAGTCTTTCCGTTGGTTGCACAACGAGGA CACCTGGATGATAAGTCTTTCCGTTGGTTGCACAACGAGGA < 41bp 1 0.171206242179714 1 0.286462783813477 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122266;BS-seq with improved protocol;Liver;Control TALDO1 ENSG00000177156 CDS Human protein_coding chr11:764334 chr11:764325 nonsynonymous SNV 0.989 5 12 hm5C_associated_SNPs_43321 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_42321 DeepMRMD:1;iRNA_m5C:0.999536712157816 42322 chr11 43413475 43413475 1 + T C UCEC 43413476 + 43413456 43413496 41 GGAGTATAGATGACATAGGTCACCTCATTCATGAAGGCCTA GGAGTATAGATGACATAGGCCACCTCATTCATGAAGGCCTA < 41bp 1 0.273708968997949 1 0.0621383190155029 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTC17 ENSG00000052841 CDS Human protein_coding chr11:43413476 chr11:43413475 synonymous SNV . 0 20 hm5C_associated_SNPs_43322 0 0 1 0 1 Nucleus 1 0.500231643915517 1 0.999536712168966 hm5C_site_42322 DeepMRMD:1;iRNA_m5C:0.999536712168966 42323 chr2 191523983 191523983 1 + T G UCEC 191523972 + 191523952 191523992 41 TATTACAAAAAGCCAATCTACTTTCTTATTTTGATGCCTTT TATTACAAAAAGCCAATCTACTTTCTTATTTGGATGCCTTT < 41bp 1 0.0677874413225327 1 0.0374069809913635 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAB1 ENSG00000138386 CDS Human protein_coding chr2:191523972 chr2:191523983 nonsynonymous SNV 0.907 4 32 hm5C_associated_SNPs_43323 0 0 1 0 0 Cytosol 1 0.500231643921094 1 0.999536712157813 hm5C_site_42323 DeepMRMD:1;iRNA_m5C:0.999536712157813 42324 chr12 94563018 94563018 1 + A C UCEC 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTCAT < 41bp 1 0.0781452934409065 1 0.0791213810443878 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563018 synonymous SNV . 0 39 hm5C_associated_SNPs_43324 0 0 1 0 2 chromatin 1 0.500231642609875 1 0.99953671478025 hm5C_site_42324 DeepMRMD:1;iRNA_m5C:0.99953671478025 42325 chr7 130020954 130020954 1 + A G UCEC 130020965 + 130020945 130020985 41 GGTGCTCCGAATCTCTGTAGCCGATGAGGCCCAGGTACAGA GGTGCTCCGGATCTCTGTAGCCGATGAGGCCCAGGTACAGA < 41bp 1 0.342708601920518 1 0.211583971977234 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020965 chr7:130020954 synonymous SNV . 0 10 hm5C_associated_SNPs_43325 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643926423 1 0.999536712147154 hm5C_site_42325 DeepMRMD:1;iRNA_m5C:0.999536712147154 42326 chr5 127522285 127522285 1 + C T UCEC 127522271 + 127522251 127522291 41 TCTATCTAAGGACCTACCACCAATCCTCCTAGTTCGTGGGA TCTATCTAAGGACCTACCACCAATCCTCCTAGTTTGTGGGA < 41bp 1 0.0630831240775422 1 0.724978685379028 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SLC12A2 ENSG00000064651 CDS Human protein_coding chr5:127522271 chr5:127522285 nonsynonymous SNV 0.987 5 35 hm5C_associated_SNPs_43326 0 0 1 0 1 Nucleus 1 0.500231643919404 0.550042629241944 0.999536712161192 hm5C_site_42326 DeepMRMD:0.550042629241944;iRNA_m5C:0.999536712161192 42327 chr4 37857247 37857247 1 + A C UCEC 37857261 + 37857241 37857281 41 AGTAAAAGCAGCCAAATGATCACCTTCACCTTTGCTAATGG AGTAAACGCAGCCAAATGATCACCTTCACCTTTGCTAATGG < 41bp 1 0.619159116246974 1 0.190731853246689 experiment 0.761681767506052 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PGM2 ENSG00000169299 CDS Human protein_coding chr4:37857261 chr4:37857247 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_43327 0 0 0 0 1 Nucleus 1 0.500231644044047 1 0.999536711911905 hm5C_site_42327 DeepMRMD:1;iRNA_m5C:0.999536711911905 42328 chr17 8172158 8172158 1 + G T UCEC 8172177 + 8172157 8172197 41 GGAGTGCGCACGGGGAAGGTCAGGCCCAAGGAAGGCTGGGG GTAGTGCGCACGGGGAAGGTCAGGCCCAAGGAAGGCTGGGG < 41bp 1 0.560009730588745 1 0.799729824066162 experiment 0.879980538822511 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PFAS ENSG00000178921 CDS Human protein_coding chr17:8172177 chr17:8172158 nonsynonymous SNV 0.947 4 2 hm5C_associated_SNPs_43328 0 0 1 0 1 Nucleus 1 0.500231643921092 0.400540351867676 0.999536712157817 hm5C_site_42328 DeepMRMD:0.400540351867676;iRNA_m5C:0.999536712157817 42329 chr6 7579645 7579645 1 + G A UCEC 7579653 + 7579633 7579673 41 CCAGTTCAAAGCGAAGCTTGCGAGCCTGGAGGAGCTGAAGA CCAGTTCAAAGCAAAGCTTGCGAGCCTGGAGGAGCTGAAGA < 41bp 1 0.233317482644936 1 0.414813071489334 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7579653 chr6:7579645 synonymous SNV . 0 13 hm5C_associated_SNPs_43329 0 0 1 0 0 Nucleus 1 0.500231643987751 1 0.999536712024498 hm5C_site_42329 DeepMRMD:1;iRNA_m5C:0.999536712024498 42330 chrX 123190069 123190069 1 + G T UCEC 123190075 + 123190055 123190095 41 CAGTAGCAGCTGGAGAATTTCTCTACAAAAAGTAAATCTAT CAGTAGCAGCTGGATAATTTCTCTACAAAAAGTAAATCTAT < 41bp 1 0.513070628542924 1 0.941492080688477 experiment 0.973858742914151 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123190075 chrX:123190069 stopgain 1.000 1 15 hm5C_associated_SNPs_43330 0 0 1 0 2 Nucleus 1 0.500231643921092 0.117015838623046 0.999536712157815 hm5C_site_42330 DeepMRMD:0.117015838623046;iRNA_m5C:0.999536712157815 42331 chr22 45579398 45579398 1 + T G UCEC 45579387 + 45579367 45579407 41 GACACAGCTTTTGGTGCGGGCAGACACCAATTTAGGTGGGT GACACAGCTTTTGGTGCGGGCAGACACCAATGTAGGTGGGT < 41bp 1 0.111483163288223 1 0.41553196310997 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NUP50 ENSG00000093000 CDS Human protein_coding chr22:45579387 chr22:45579398 nonsynonymous SNV 0.999 1 32 hm5C_associated_SNPs_43331 0 0 1 0 1 Ribosome 1 0.500231641268352 1 0.999536717463296 hm5C_site_42331 DeepMRMD:1;iRNA_m5C:0.999536717463296 42332 chr16 57144721 57144721 1 + G A UCEC 57144701 + 57144681 57144721 41 CCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGCG CCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGCA < 41bp 1 0.264630971303037 1 0.246393591165543 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57144701 chr16:57144721 nonsynonymous SNV 0.944 3 41 hm5C_associated_SNPs_43332 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42332 DeepMRMD:1;iRNA_m5C:0.999536712157815 42333 chrX 110951600 110951600 1 + C A UCEC 110951619 + 110951599 110951639 41 TCTTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAACATATC TATTTCGGGCCATTTCGGAGCAGGTAAAAGGAAAACATATC < 41bp 1 0.470433991983063 1 0.870934247970581 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG13 ENSG00000101901 CDS Human protein_coding chrX:110951619 chrX:110951600 synonymous SNV . 0 2 hm5C_associated_SNPs_43334 0 0 1 0 1 Cytosol 1 0.500231643921092 0.258131504058838 0.999536712157815 hm5C_site_42333 DeepMRMD:0.258131504058838;iRNA_m5C:0.999536712157815 42334 chr22 18979468 18979468 1 + T G UCEC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGCGAACCAAGCCGGTCTGTGTGTTCTGGAAC < 41bp 1 0.363267321593334 1 0.309418529272079 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979468 . . 0 23 hm5C_associated_SNPs_43335 0 0 0 0 1 unknown 1 0.500231644192663 1 0.999536711614674 hm5C_site_42334 DeepMRMD:1;iRNA_m5C:0.999536711614674 42335 chr13 77574678 77574678 1 + C T UCEC 77574692 + 77574672 77574712 41 AGCCAGCCCAGAAAAGGGGGCAGAGACATGGTTTGATTCCT AGCCAGTCCAGAAAAGGGGGCAGAGACATGGTTTGATTCCT < 41bp 1 0.282009650975948 1 0.279962033033371 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77574692 chr13:77574678 synonymous SNV . 0 7 hm5C_associated_SNPs_43336 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920345 1 0.99953671215931 hm5C_site_42335 DeepMRMD:1;iRNA_m5C:0.99953671215931 42336 chr16 58073998 58073998 1 + C A UCEC 58073989 + 58073969 58074009 41 CCGTTTGATGGCACCGGTGGCTTTCTGGCCCACGCCTATTT CCGTTTGATGGCACCGGTGGCTTTCTGGCACACGCCTATTT < 41bp 1 0.0626735294272025 1 0.0257281363010406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MMP15 ENSG00000102996 CDS Human protein_coding chr16:58073989 chr16:58073998 synonymous SNV . 0 30 hm5C_associated_SNPs_43337 0 0 0 0 1 Ribosome 1 0.500231274442677 1 0.999537451114646 hm5C_site_42336 DeepMRMD:1;iRNA_m5C:0.999537451114646 42337 chr17 17061785 17061785 1 + T C UCEC 17061773 + 17061753 17061793 41 CCAGAGGAAAAAAACAAGAGCAGCTGCTCTTTTGAGACCTG CCAGAGGAAAAAAACAAGAGCAGCTGCTCTTTCGAGACCTG < 41bp 1 0.100794710965395 1 0.328359097242355 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MPRIP ENSG00000133030 CDS Human protein_coding chr17:17061773 chr17:17061785 synonymous SNV . 0 33 hm5C_associated_SNPs_43338 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42337 DeepMRMD:1;iRNA_m5C:0.999536712157815 42338 chr1 28975133 28975133 1 + T A UCEC 28975140 + 28975120 28975160 41 CTTCTGTCGTGAGTGGCACACGTAGGGCAACTCGATTGCTC CTTCTGTCGTGAGAGGCACACGTAGGGCAACTCGATTGCTC < 41bp 1 0.58779622506442 1 0.255649626255035 experiment 0.824407549871159 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LINC01715;RNU11 ENSG00000270103 ncRNA_exonic Human lincRNA chr1:28975140 chr1:28975133 . . 0 14 hm5C_associated_SNPs_43341 0 0 1 1 0 unknown 1 0.500231479744853 1 0.999537040510295 hm5C_site_42338 DeepMRMD:1;iRNA_m5C:0.999537040510295 42339 chr16 78143703 78143703 1 + T G UCEC 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATACGGATGGGAACAAGAAACGGATGAGAACGGA < 41bp 1 0.422559487470321 1 0.444598853588104 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143703 stoploss 0.995 0 29 hm5C_associated_SNPs_43342 0 0 1 0 2 Ribosome 1 0.500231643921456 1 0.999536712157087 hm5C_site_42339 DeepMRMD:1;iRNA_m5C:0.999536712157087 42340 chr2 113309368 113309368 1 + C A UCEC 113309353 + 113309333 113309373 41 CTTTTATTTTCTATTCTAGGCACTTGTCAGCTTTTCTGATT CTTTTATTTTCTATTCTAGGCACTTGTCAGCTTTTATGATT < 41bp 1 0.0684754848134016 1 0.0411527752876282 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR1B ENSG00000125630 CDS Human protein_coding chr2:113309353 chr2:113309368 nonsynonymous SNV 0.990 4 36 hm5C_associated_SNPs_43343 0 0 1 0 1 Nucleus 1 0.50023164152267 1 0.99953671695466 hm5C_site_42340 DeepMRMD:1;iRNA_m5C:0.99953671695466 42341 chr1 39877626 39877626 1 + C A UCEC 39877617 + 39877597 39877637 41 CTTATTGCCCACGTTGATATCATGAGAGACACTTCCACTGT CTTATTGCCCACGTTGATATCATGAGAGAAACTTCCACTGT < 41bp 1 0.385088972458532 1 0.52105039358139 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIAA0754 ENSG00000255103 CDS Human other chr1:39877617 chr1:39877626 nonsynonymous SNV 0.062 0 30 hm5C_associated_SNPs_43344 0 0 0 0 0 Nucleus 1 0.500231925163422 0.95789921283722 0.999536149673157 hm5C_site_42341 DeepMRMD:0.95789921283722;iRNA_m5C:0.999536149673157 42342 chr1 201163359 201163359 1 + C T UCEC 201163360 + 201163340 201163380 41 CCCTGAAGGCTGCAGCACGCCGGACTTTGAGCAGAAGCCCG CCCTGAAGGCTGCAGCACGTCGGACTTTGAGCAGAAGCCCG < 41bp 1 0.380655397025918 1 0.515500724315643 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201163360 chr1:201163359 nonsynonymous SNV 0.993 1 20 hm5C_associated_SNPs_43345 0 0 0 0 1 exosome 1 0.500231643923901 0.968998551368714 0.999536712152198 hm5C_site_42342 DeepMRMD:0.968998551368714;iRNA_m5C:0.999536712152198 42343 chr2 27157543 27157543 1 + G A UCEC 27157542 + 27157522 27157562 41 CCACGCGGCTGCCTATGTCACGGTGCCTCCCCTGAGACTGG CCACGCGGCTGCCTATGTCACAGTGCCTCCCCTGAGACTGG < 41bp 1 0.345807958614373 1 0.716585278511047 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157542 chr2:27157543 synonymous SNV . 0 22 hm5C_associated_SNPs_43346 0 0 0 0 2 Ribosome 1 0.500231643921109 0.566829442977906 0.999536712157783 hm5C_site_42343 DeepMRMD:0.566829442977906;iRNA_m5C:0.999536712157783 42344 chr11 810347 810347 1 + G T UCEC 810346 + 810326 810366 41 GTATCGAGGCGGACGACGACCGGCTCAACAAGGTAGCGGCC GTATCGAGGCGGACGACGACCTGCTCAACAAGGTAGCGGCC < 41bp 1 0.694870325284311 1 0.121892929077148 experiment 0.610259349431377 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPLP2 ENSG00000177600 CDS Human protein_coding chr11:810346 chr11:810347 nonsynonymous SNV 0.928 2 22 hm5C_associated_SNPs_43347 0 0 1 0 1 Ribosome 1 0.500231643833791 1 0.999536712332417 hm5C_site_42344 DeepMRMD:1;iRNA_m5C:0.999536712332417 42345 chrX 73045669 73045669 1 + T C UCEC 73045684 - 73045664 73045704 41 TGGGAAGTTGATTTAAATGACTGATAATGTGTATGAAAGCA TGGGAAGTTGATTTAAATGACTGATAATGTGTATGGAAGCA < 41bp 1 0.065124024444336 1 0.0605373680591583 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73045684 chrX:73045669 . . 0 36 hm5C_associated_SNPs_43348 0 0 1 3 0 unknown 1 0.500231574033917 1 0.999536851932167 hm5C_site_42345 DeepMRMD:1;iRNA_m5C:0.999536851932167 42346 chr16 842481 842481 1 + C A UCEC 842482 + 842462 842502 41 CATCCTGAACCGCAAGGGGCCACAGGAGGTGGGGCCACAGG CATCCTGAACCGCAAGGGGACACAGGAGGTGGGGCCACAGG < 41bp 1 0.530607199774287 1 0.215890467166901 experiment 0.938785600451426 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842482 chr16:842481 nonsynonymous SNV 0.005 0 20 hm5C_associated_SNPs_43351 0 0 1 0 1 Nucleus 1 0.500231643921001 1 0.999536712157999 hm5C_site_42346 DeepMRMD:1;iRNA_m5C:0.999536712157999 42347 chr15 69560936 69560936 1 + G A UCEC 69560923 + 69560903 69560943 41 GACAACATTACCATCTCTACCACAGCCCACATGGCTGCATT GACAACATTACCATCTCTACCACAGCCCACATGACTGCATT < 41bp 1 0.449588022111828 1 0.3287273645401 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GLCE ENSG00000138604 CDS Human protein_coding chr15:69560923 chr15:69560936 nonsynonymous SNV 0.997 1 34 hm5C_associated_SNPs_43352 0 0 0 0 0 Ribosome 1 0.50023172506635 1 0.9995365498673 hm5C_site_42347 DeepMRMD:1;iRNA_m5C:0.9995365498673 42348 chr2 42886997 42886997 1 + A T UCEC 42886977 + 42886957 42886997 41 TAGTTTGCATATGAGTGCTGCTGCAGCTTCCCGAGACATCA TAGTTTGCATATGAGTGCTGCTGCAGCTTCCCGAGACATCT < 41bp 1 0.275659916474752 1 0.268521547317505 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTA3 ENSG00000057935 CDS Human protein_coding chr2:42886977 chr2:42886997 nonsynonymous SNV 0.997 1 41 hm5C_associated_SNPs_43353 0 0 1 0 2 Cytosol 1 0.500231648467119 1 0.999536703065763 hm5C_site_42348 DeepMRMD:1;iRNA_m5C:0.999536703065763 42349 chr11 4112570 4112570 1 + G A UCEC 4112557 + 4112537 4112577 41 TCCTCCCTCCACATGAGTGACCGCCAGCGTGTGGCCCCCAA TCCTCCCTCCACATGAGTGACCGCCAGCGTGTGACCCCCAA < 41bp 1 0.155403087120557 1 0.0687461793422699 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STIM1 ENSG00000167323 CDS Human protein_coding chr11:4112557 chr11:4112570 nonsynonymous SNV 0.825 0 34 hm5C_associated_SNPs_43354 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_42349 DeepMRMD:1;iRNA_m5C:0.999536712157814 42350 chr16 705346 705346 1 + G A UCEC 705347 + 705327 705367 41 GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT GCAGTGTGCGGCTCTGGCGACTGCGTGGCGGGGTGCTGCGT < 41bp 1 0.533166550248517 1 0.481648564338684 experiment 0.933666899502966 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:705347 chr16:705346 synonymous SNV . 0 20 hm5C_associated_SNPs_43355 0 0 1 0 1 Cytosol 1 0.500222715257836 1 0.999554569484328 hm5C_site_42350 DeepMRMD:1;iRNA_m5C:0.999554569484328 42351 chr11 67018210 67018210 1 + C T UCEC 67018208 + 67018188 67018228 41 AGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAGAGAA AGGTCTGGATGTCTGTCTTCCGTTACCTCAGCCGCAGAGAA < 41bp 1 0.236189158309329 1 0.140258431434631 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67018208 chr11:67018210 synonymous SNV . 0 23 hm5C_associated_SNPs_43356 0 0 1 0 1 Cytosol 1 0.500231643875465 1 0.999536712249069 hm5C_site_42351 DeepMRMD:1;iRNA_m5C:0.999536712249069 42352 chr7 128846157 128846157 1 + C T UCEC 128846171 + 128846151 128846191 41 CACCTGCTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC CACCTGTTCACCTGGTCACTCCCCTTTGTCCTCACTGTGGC < 41bp 1 0.219186859517371 1 0.0458514988422394 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SMO ENSG00000128602 CDS Human protein_coding chr7:128846171 chr7:128846157 nonsynonymous SNV 0.995 3 7 hm5C_associated_SNPs_43358 0 0 0 0 1 cytosol 1 0.500231643920845 1 0.999536712158309 hm5C_site_42352 DeepMRMD:1;iRNA_m5C:0.999536712158309 42353 chr14 105959048 105959048 1 + G A UCEC 105959051 + 105959031 105959071 41 TGGTGTCCAGTCAGCAGGAGCAGTGCGCCCTCCTGAGCAAG TGGTGTCCAGTCAGCAGAAGCAGTGCGCCCTCCTGAGCAAG < 41bp 1 0.387190834469223 1 0.281623989343643 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105959051 chr14:105959048 nonsynonymous SNV 0.998 4 18 hm5C_associated_SNPs_43361 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_42353 DeepMRMD:1;iRNA_m5C:0.999536712157815 42354 chr1 23408755 23408755 1 + G A UCEC 23408765 + 23408745 23408785 41 TGATCCCTGGGCTCGGGGCTCTTATTCCTATGTTGCTGCAG TGATCCCTGGACTCGGGGCTCTTATTCCTATGTTGCTGCAG < 41bp 1 0.123860500640321 1 0.101054280996323 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KDM1A ENSG00000004487 CDS Human protein_coding chr1:23408765 chr1:23408755 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_43362 0 0 1 0 1 Cytosol 1 0.500231643918917 1 0.999536712162165 hm5C_site_42354 DeepMRMD:1;iRNA_m5C:0.999536712162165 42355 chr14 102484866 102484866 1 + C T UCEC 102484854 + 102484834 102484874 41 GCCTCCCTCACACAGATCTACGGCACCTTCAACCGCGCCAT GCCTCCCTCACACAGATCTACGGCACCTTCAATCGCGCCAT < 41bp 1 0.397353133360104 1 0.443766862154007 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484854 chr14:102484866 synonymous SNV . 0 33 hm5C_associated_SNPs_43363 0 0 1 0 2 Cytosol 1 0.500231643919684 1 0.999536712160632 hm5C_site_42355 DeepMRMD:1;iRNA_m5C:0.999536712160632 42356 chr14 102484866 102484866 1 + C T UCEC 102484872 + 102484852 102484892 41 TACGGCACCTTCAACCGCGCCATGCTGAGGCTCATTCCATC TACGGCACCTTCAATCGCGCCATGCTGAGGCTCATTCCATC < 41bp 1 0.0555281837197756 1 0.132000625133514 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102484872 chr14:102484866 synonymous SNV . 0 15 hm5C_associated_SNPs_43364 0 0 1 0 2 Cytosol 1 0.500099187669632 1 0.999801624660735 hm5C_site_42356 DeepMRMD:1;iRNA_m5C:0.999801624660735 42357 chr5 149754338 149754338 1 + C T UCEC 149754323 + 149754303 149754343 41 GCGGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGA GCGGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGTGAGGA < 41bp 1 0.53105436138435 1 0.376139402389526 experiment 0.9378912772313 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754323 chr5:149754338 synonymous SNV . 0 36 hm5C_associated_SNPs_43366 1 0 1 0 1 Nucleus 1 0.500231643921199 1 0.999536712157601 hm5C_site_42357 DeepMRMD:1;iRNA_m5C:0.999536712157601 Treacher Collins syndrome 1 Treacher Collins syndrome 1 42358 chr5 149754338 149754338 1 + C T UCEC 149754325 + 149754305 149754345 41 GGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGCGAGGAAT GGGGAAGCGGGAGGAGGACTCGCAGAGCAGCAGTGAGGAAT < 41bp 1 0.695635069028145 1 0.723336696624756 experiment 0.60872986194371 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754325 chr5:149754338 synonymous SNV . 0 34 hm5C_associated_SNPs_43367 1 0 1 0 1 Nucleus 1 0.50023164394311 0.553326606750488 0.999536712113781 hm5C_site_42358 DeepMRMD:0.553326606750488;iRNA_m5C:0.999536712113781 Treacher Collins syndrome 1 Treacher Collins syndrome 1 42359 chr5 149754338 149754338 1 + C T UCEC 149754335 + 149754315 149754355 41 GAGGAGGACTCGCAGAGCAGCAGCGAGGAATCGGACAGTGA GAGGAGGACTCGCAGAGCAGCAGTGAGGAATCGGACAGTGA < 41bp 1 0.330600488278397 1 0.214113026857376 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149754335 chr5:149754338 synonymous SNV . 0 24 hm5C_associated_SNPs_43368 1 0 1 0 1 Nucleus 1 0.500231610890275 1 0.99953677821945 hm5C_site_42359 DeepMRMD:1;iRNA_m5C:0.99953677821945 Treacher Collins syndrome 1 Treacher Collins syndrome 1 42360 chrX 56591620 56591620 1 + G A UCEC 56591612 + 56591592 56591632 41 AGCTCCCAGCCTTCCTGCAGCAGATGCAGAATCCAGACACA AGCTCCCAGCCTTCCTGCAGCAGATGCAAAATCCAGACACA < 41bp 1 0.382817710697224 1 0.384106308221817 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56591612 chrX:56591620 synonymous SNV . 0 29 hm5C_associated_SNPs_43369 0 0 1 0 0 nucleus 1 0.500231657641424 1 0.999536684717152 hm5C_site_42360 DeepMRMD:1;iRNA_m5C:0.999536684717152 42361 chr1 26136184 26136184 1 + G A UCEC 26136177 + 26136157 26136197 41 GATCCCCTTCCCCACAGGATCCATGCCGAGTTCCAGCTCAG GATCCCCTTCCCCACAGGATCCATGCCAAGTTCCAGCTCAG < 41bp 1 0.0944447652404557 1 0.0377747714519501 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136177 chr1:26136184 nonsynonymous SNV 0.944 5 28 hm5C_associated_SNPs_43370 0 0 1 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_42361 DeepMRMD:1;iRNA_m5C:0.999536712157815 42362 chr17 4797386 4797386 1 + C T UCEC 4797367 + 4797347 4797387 41 ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGCG ACCCAGCCCCCATACGGGGGCGGCACCATGGTGGTCCAGTG < 41bp 1 0.478839863287739 1 0.170426100492477 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797367 chr17:4797386 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_43371 0 0 1 0 1 Ribosome 1 0.500231644311579 1 0.999536711376842 hm5C_site_42362 DeepMRMD:1;iRNA_m5C:0.999536711376842 42363 chr20 32665002 32665002 1 + G A UCEC 32664995 + 32664975 32665015 41 GCCTGCCCCAGGGGGAAGCACGGACCCGAGACGACGGCGAT GCCTGCCCCAGGGGGAAGCACGGACCCAAGACGACGGCGAT < 41bp 1 0.395771171421529 1 0.774309992790222 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664995 chr20:32665002 nonsynonymous SNV 0.029 0 28 hm5C_associated_SNPs_43372 0 0 1 0 1 Cytosol 1 0.500231643921091 0.451380014419556 0.999536712157818 hm5C_site_42363 DeepMRMD:0.451380014419556;iRNA_m5C:0.999536712157818 42364 chr20 32665002 32665002 1 + G A UCEC 32664999 + 32664979 32665019 41 GCCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGG GCCCCAGGGGGAAGCACGGACCCAAGACGACGGCGATGAGG < 41bp 1 0.573093078546112 1 0.257423669099808 experiment 0.853813842907776 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664999 chr20:32665002 nonsynonymous SNV 0.029 0 24 hm5C_associated_SNPs_43373 0 0 1 0 1 Cytosol 1 0.500231159387675 1 0.99953768122465 hm5C_site_42364 DeepMRMD:1;iRNA_m5C:0.99953768122465 42365 chr20 32665002 32665002 1 + G A UCEC 32665000 + 32664980 32665020 41 CCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGGA CCCCAGGGGGAAGCACGGACCCAAGACGACGGCGATGAGGA < 41bp 1 0.223795918970785 1 0.403342008590698 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665000 chr20:32665002 nonsynonymous SNV 0.029 0 23 hm5C_associated_SNPs_43374 0 0 1 0 1 Cytosol 1 0.500231643756743 1 0.999536712486514 hm5C_site_42365 DeepMRMD:1;iRNA_m5C:0.999536712486514 42366 chr16 85839355 85839355 1 + C A UCEC 85839335 + 85839315 85839355 41 AATGGCTGTCCTCTCTGCCCCCAGTGTATCGCATTAAGTTC AATGGCTGTCCTCTCTGCCCCCAGTGTATCGCATTAAGTTA < 41bp 1 0.41532518145238 1 0.427894115447998 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85839335 chr16:85839355 nonsynonymous SNV 0.843 3 41 hm5C_associated_SNPs_43375 0 0 1 0 1 Ribosome 1 0.500231650335828 1 0.999536699328344 hm5C_site_42366 DeepMRMD:1;iRNA_m5C:0.999536699328344 42367 chr16 85839355 85839355 1 + C A UCEC 85839336 + 85839316 85839356 41 ATGGCTGTCCTCTCTGCCCCCAGTGTATCGCATTAAGTTCA ATGGCTGTCCTCTCTGCCCCCAGTGTATCGCATTAAGTTAA < 41bp 1 0.501625699688772 1 0.793993651866913 experiment 0.996748600622457 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85839336 chr16:85839355 nonsynonymous SNV 0.843 3 40 hm5C_associated_SNPs_43376 0 0 1 0 1 Ribosome 1 0.500231643921092 0.412012696266174 0.999536712157815 hm5C_site_42367 DeepMRMD:0.412012696266174;iRNA_m5C:0.999536712157815 42368 chr8 22037964 22037964 1 + G A UCEC 22037952 + 22037932 22037972 41 ACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGC ACCCCAATGGCTACTCTGCTCACATGCACTGCATGTGGCGC < 41bp 1 0.374905505644244 1 0.0933316946029663 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037952 chr8:22037964 nonsynonymous SNV 0.930 2 33 hm5C_associated_SNPs_43377 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643681059 1 0.999536712637883 hm5C_site_42368 DeepMRMD:1;iRNA_m5C:0.999536712637883 42369 chr1 32620231 32620231 1 + G C UCEC 32620232 + 32620212 32620252 41 GACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAA GACAATTATCGAATGAAGACCTATAAGAACAATGCTCTAAA < 41bp 1 0.250764770322725 1 0.333719849586487 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620232 chr1:32620231 nonsynonymous SNV 1.000 1 20 hm5C_associated_SNPs_43378 0 0 1 0 2 Cytosol 1 0.500234054461631 1 0.999531891076737 hm5C_site_42369 DeepMRMD:1;iRNA_m5C:0.999531891076737 42370 chr1 32620231 32620231 1 + G C UCEC 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGACCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA < 41bp 1 0.328140128686102 1 0.137161135673523 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620231 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_43379 0 0 1 0 2 Cytosol 1 0.500231614155301 1 0.999536771689398 hm5C_site_42370 DeepMRMD:1;iRNA_m5C:0.999536771689398 42371 chr1 32620231 32620231 1 + G C UCEC 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGACCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA < 41bp 1 0.275096821699593 1 0.279112696647644 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620231 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_43380 0 0 1 0 2 Cytosol 1 0.500231643817105 1 0.999536712365789 hm5C_site_42371 DeepMRMD:1;iRNA_m5C:0.999536712365789 42372 chr10 105185080 105185080 1 + A G UCEC 105185079 + 105185059 105185099 41 ATAAAGAAGCACACCCTCTCCATCGGGGACATGGTCACAGG ATAAAGAAGCACACCCTCTCCGTCGGGGACATGGTCACAGG < 41bp 1 0.373227660803813 1 0.474843561649323 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105185079 chr10:105185080 nonsynonymous SNV 0.644 1 22 hm5C_associated_SNPs_43381 0 0 1 0 0 Nucleus 1 0.500231643892127 1 0.999536712215746 hm5C_site_42372 DeepMRMD:1;iRNA_m5C:0.999536712215746 42373 chr11 120099668 120099668 1 + C A UCEC 120099680 + 120099660 120099700 41 GGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG GGGAAGCCATGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG < 41bp 1 0.524361132383256 1 0.483053505420685 experiment 0.951277735233488 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099680 chr11:120099668 synonymous SNV . 0 9 hm5C_associated_SNPs_43383 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_42373 DeepMRMD:1;iRNA_m5C:0.999536712157815 42374 chr11 244732 244732 1 + T G UCEC 244747 + 244727 244767 41 TAAAATTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA TAAAAGTAAACATCGGGGACCTACAGGTTACAAAGGTGAGA < 41bp 1 0.335293684061981 1 0.179504692554474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMD13 ENSG00000185627 CDS Human protein_coding chr11:244747 chr11:244732 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_43384 0 0 1 1 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42374 DeepMRMD:1;iRNA_m5C:0.999536712157815 42375 chr1 171501740 171501740 1 + G A UCEC 171501758 + 171501738 171501778 41 AGGAAATTAGGGAAAGGGAGCGAGAAAAAGAACGGGAGCGT AGAAAATTAGGGAAAGGGAGCGAGAAAAAGAACGGGAGCGT < 41bp 1 0.603517121223178 1 0.716052353382111 experiment 0.792965757553645 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171501758 chr1:171501740 nonsynonymous SNV 0.996 2 3 hm5C_associated_SNPs_43385 0 0 1 0 0 Cytosol 1 0.500231643921091 0.567895293235778 0.999536712157819 hm5C_site_42375 DeepMRMD:0.567895293235778;iRNA_m5C:0.999536712157819 42376 chr7 98601886 98601886 1 + C A UCEC 98601905 + 98601885 98601925 41 TCTTGGAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTC TATTGGAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTC < 41bp 1 0.124816340097857 1 0.547884702682495 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98601905 chr7:98601886 synonymous SNV . 0 2 hm5C_associated_SNPs_43386 0 0 1 0 1 Nucleus 1 0.500231643921092 0.90423059463501 0.999536712157815 hm5C_site_42376 DeepMRMD:0.90423059463501;iRNA_m5C:0.999536712157815 42377 chr20 11900401 11900401 1 + G A UCEC 11900386 + 11900366 11900406 41 TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCGATGTT TATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCAATGTT < 41bp 1 0.189215368261748 1 0.162416636943817 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900386 chr20:11900401 synonymous SNV . 0 36 hm5C_associated_SNPs_43387 0 0 1 0 2 Cytosol 1 0.500231152982527 1 0.999537694034945 hm5C_site_42377 DeepMRMD:1;iRNA_m5C:0.999537694034945 42378 chr12 51034576 51034576 1 + C A UCEC 51034590 + 51034570 51034610 41 CTTCTGCTCCCTCTAAGTACCACCGAACTCGATCTGGGGGA CTTCTGATCCCTCTAAGTACCACCGAACTCGATCTGGGGGA < 41bp 1 0.692055172261449 1 0.75525975227356 experiment 0.615889655477103 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51034590 chr12:51034576 nonsynonymous SNV 0.999 0 7 hm5C_associated_SNPs_43388 0 0 1 0 1 Nucleus 1 0.500231661327086 0.48948049545288 0.999536677345829 hm5C_site_42378 DeepMRMD:0.48948049545288;iRNA_m5C:0.999536677345829 42379 chr9 67926912 67926912 1 + G A UCEC 67926906 + 67926886 67926926 41 GCTTCGGGAGCCGCAGGGGCCAGACGGCCCAGGGCTCCATA GCTTCGGGAGCCGCAGGGGCCAGACGACCCAGGGCTCCATA < 41bp 1 0.483277145966882 1 0.848769068717957 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD20A1;ANKRD20A3 ENSG00000196774 CDS Human other chr9:67926906 chr9:67926912 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_43389 0 0 0 0 0 unknown 1 0.500231643921092 0.302461862564086 0.999536712157815 hm5C_site_42379 DeepMRMD:0.302461862564086;iRNA_m5C:0.999536712157815 42380 chr15 99460097 99460097 1 + C A UCEC 99460083 + 99460063 99460103 41 AAGTCTTTGAGAATTTCCTGCACAACTCCATCTTCGTGCCC AAGTCTTTGAGAATTTCCTGCACAACTCCATCTTAGTGCCC < 41bp 1 0.194264971276407 1 0.193387925624847 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99460083 chr15:99460097 nonsynonymous SNV 0.959 3 35 hm5C_associated_SNPs_43390 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164392156 1 0.999536712156879 hm5C_site_42380 DeepMRMD:1;iRNA_m5C:0.999536712156879 42381 chr15 99460097 99460097 1 + C A UCEC 99460103 + 99460083 99460123 41 CACAACTCCATCTTCGTGCCCAGGTACCCAGCTCATGTGAA CACAACTCCATCTTAGTGCCCAGGTACCCAGCTCATGTGAA < 41bp 1 0.177924870699106 1 0.271010726690292 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99460103 chr15:99460097 nonsynonymous SNV 0.959 3 15 hm5C_associated_SNPs_43391 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643882934 1 0.999536712234132 hm5C_site_42381 DeepMRMD:1;iRNA_m5C:0.999536712234132 42382 chr5 92921100 92921100 1 + C T UCEC 92921110 + 92921090 92921130 41 ACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCA ACATGCCGTGTCAACAGGAACTGTCCCATCGACCAGCACCA < 41bp 1 0.0894009286577803 1 0.0687248706817627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92921110 chr5:92921100 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_43392 0 0 1 0 1 nucleus 1 0.50029474964921 1 0.999410500701581 hm5C_site_42382 DeepMRMD:1;iRNA_m5C:0.999410500701581 42383 chr2 32824930 32824930 1 + G T UCEC 32824918 + 32824898 32824938 41 TCTTGTGAATCTAGAGACAACTGGTGGTCATAGCGTGCGAT TCTTGTGAATCTAGAGACAACTGGTGGTCATATCGTGCGAT < 41bp 1 0.243708295415335 1 0.516102910041809 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824918 chr2:32824930 nonsynonymous SNV 0.997 4 33 hm5C_associated_SNPs_43393 0 0 1 0 1 Nucleus 1 0.500231736268929 0.967794179916382 0.999536527462143 hm5C_site_42383 DeepMRMD:0.967794179916382;iRNA_m5C:0.999536527462143 42384 chr2 32824930 32824930 1 + G T UCEC 32824931 + 32824911 32824951 41 GAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCT GAGACAACTGGTGGTCATATCGTGCGATTCAATCCAAACCT < 41bp 1 0.151593276905594 1 0.634854853153229 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32824931 chr2:32824930 nonsynonymous SNV 0.997 4 20 hm5C_associated_SNPs_43394 0 0 1 0 1 Nucleus 1 0.500237416749592 0.730290293693542 0.999525166500816 hm5C_site_42384 DeepMRMD:0.730290293693542;iRNA_m5C:0.999525166500816 42385 chr16 57153147 57153147 1 + A G UCEC 57153128 + 57153108 57153148 41 ACCTCTTTGGGAAGTCAGACCCCTTTCTGGAGTTTTATAAG ACCTCTTTGGGAAGTCAGACCCCTTTCTGGAGTTTTATAGG < 41bp 1 0.0551100824294843 1 0.0546999275684357 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57153128 chr16:57153147 nonsynonymous SNV 0.994 3 40 hm5C_associated_SNPs_43395 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42385 DeepMRMD:1;iRNA_m5C:0.999536712157815 42386 chr17 21319337 21319337 1 + T C UCEC 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGCGCGCGCGCAGCTCATCAAGCCGCGGG < 41bp 1 0.653489711906071 1 0.393484562635422 experiment 0.693020576187859 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319337 nonsynonymous SNV 0.991 5 15 hm5C_associated_SNPs_43396 0 0 0 0 0 unknown 1 0.500231643998183 1 0.999536712003634 hm5C_site_42386 DeepMRMD:1;iRNA_m5C:0.999536712003634 42387 chr16 82891991 82891991 1 + G A UCEC 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGTGCTGCTGCTAACATCTGCAGAAAATTTGGACTGCA < 41bp 1 0.570403696084938 1 0.72450715303421 experiment 0.859192607830124 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891991 nonsynonymous SNV 0.998 0 29 hm5C_associated_SNPs_43397 0 0 0 0 2 Nucleus 1 0.500209238348375 0.55098569393158 0.99958152330325 hm5C_site_42387 DeepMRMD:0.55098569393158;iRNA_m5C:0.99958152330325 42388 chr11 107966303 107966303 1 + C T UCEC 107966308 + 107966288 107966328 41 ATTTGGAGGTAACCACGTTTCAGCTCGCTGTATTGTTTGCA ATTTGGAGGTAACCATGTTTCAGCTCGCTGTATTGTTTGCA < 41bp 1 0.50820057484129 1 0.459298640489578 experiment 0.98359885031742 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107966308 chr11:107966303 nonsynonymous SNV 0.998 4 16 hm5C_associated_SNPs_43398 0 0 1 0 1 Ribosome 1 0.500231643067056 1 0.999536713865887 hm5C_site_42388 DeepMRMD:1;iRNA_m5C:0.999536713865887 42389 chr14 77706878 77706878 1 + G A UCEC 77706886 + 77706866 77706906 41 GAGTTCAACGCCGAGCTCAACCGCGTGCCGCTCAAGCGGCT GAGTTCAACGCCAAGCTCAACCGCGTGCCGCTCAAGCGGCT < 41bp 1 0.189018572565088 1 0.17591118812561 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77706886 chr14:77706878 nonsynonymous SNV 0.272 3 13 hm5C_associated_SNPs_43399 0 0 0 0 2 exosome 1 0.500231643920629 1 0.999536712158743 hm5C_site_42389 DeepMRMD:1;iRNA_m5C:0.999536712158743 42390 chr3 101520151 101520151 1 + G T UCEC 101520149 + 101520129 101520169 41 GTTTGTTTCCTCCCAGGTGACAGGAATTAGCCGAAATCCCT GTTTGTTTCCTCCCAGGTGACATGAATTAGCCGAAATCCCT < 41bp 1 0.585902691185037 1 0.128760069608688 experiment 0.828194617629925 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NXPE3 ENSG00000144815 CDS Human protein_coding chr3:101520149 chr3:101520151 stopgain 0.414 0 23 hm5C_associated_SNPs_43400 0 0 1 0 1 Ribosome 1 0.500231643919519 1 0.999536712160961 hm5C_site_42390 DeepMRMD:1;iRNA_m5C:0.999536712160961 42391 chr3 195398114 195398114 1 + A T UCEC 195398099 + 195398079 195398119 41 AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGTCCTGG < 41bp 1 0.151014345962163 1 0.0264990925788879 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195398099 chr3:195398114 . . 0 36 hm5C_associated_SNPs_43401 0 0 0 0 1 unknown 1 0.500231431394414 1 0.999537137211173 hm5C_site_42391 DeepMRMD:1;iRNA_m5C:0.999537137211173 42392 chr16 30016649 30016649 1 + G T UCEC 30016663 + 30016643 30016683 41 CCCTAAGATGCCCCCCCCCACGATCCTGAGCACGGTCCCTC CCCTAATATGCCCCCCCCCACGATCCTGAGCACGGTCCCTC < 41bp 1 0.258003862530397 1 0.120908707380295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INO80E ENSG00000169592 CDS Human protein_coding chr16:30016663 chr16:30016649 nonsynonymous SNV 0.390 3 7 hm5C_associated_SNPs_43402 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42392 DeepMRMD:1;iRNA_m5C:0.999536712157815 42393 chr8 107752593 107752593 1 + G T UCEC 107752575 + 107752555 107752595 41 ACTTTGTTTTCTAAAGCTTACCAAGCATCTTCCACCAAGAA ACTTTGTTTTCTAAAGCTTACCAAGCATCTTCCACCAATAA < 41bp 1 0.0689776893574875 1 0.0378376245498657 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752575 chr8:107752593 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_43403 0 0 1 0 1 chromatin 1 0.50023160327969 1 0.999536793440621 hm5C_site_42393 DeepMRMD:1;iRNA_m5C:0.999536793440621 42394 chr18 60642763 60642763 1 + C T UCEC 60642776 + 60642756 60642796 41 TCTCTGTCGAAATGGAAAGCCGCTGCCTCTGTCCAGATCTT TCTCTGTTGAAATGGAAAGCCGCTGCCTCTGTCCAGATCTT < 41bp 1 0.131078129754162 1 0.375677049160004 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60642776 chr18:60642763 stopgain 0.998 0 8 hm5C_associated_SNPs_43404 0 0 0 0 1 Cytosol 1 0.500281958646173 1 0.999436082707655 hm5C_site_42394 DeepMRMD:1;iRNA_m5C:0.999436082707655 42395 chr12 104335638 104335638 1 + T C UCEC 104335627 + 104335607 104335647 41 AAGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCGCGA AAGGTGGACTCAGATGATCTCCCCTTGAATGCTTCCCGCGA < 41bp 1 0.313752827692736 1 0.363022804260254 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104335627 chr12:104335638 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_43405 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42395 DeepMRMD:1;iRNA_m5C:0.999536712157815 42396 chr4 41621302 41621302 1 + G A UCEC 41621300 + 41621280 41621320 41 GGCGGACTTCCCATGGTGAGCCGAAATCAGCAGTGCCTTTT GGCGGACTTCCCATGGTGAGCCAAAATCAGCAGTGCCTTTT < 41bp 1 0.473138092277089 1 0.392906248569489 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMCH1 ENSG00000064042 CDS Human protein_coding chr4:41621300 chr4:41621302 synonymous SNV . 0 23 hm5C_associated_SNPs_43406 0 0 0 0 1 Nucleus 1 0.500231643965457 1 0.999536712069086 hm5C_site_42396 DeepMRMD:1;iRNA_m5C:0.999536712069086 42397 chr2 135095981 135095981 1 + A C UCEC 135095983 + 135095963 135096003 41 AGAACCTTGAAAAGAGAAAGCGGAAGAAAGTGAGTTTCTTA AGAACCTTGAAAAGAGAACGCGGAAGAAAGTGAGTTTCTTA < 41bp 1 0.460205626021671 1 0.658387064933777 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135095983 chr2:135095981 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_43407 0 0 0 0 1 Ribosome 1 0.500231643921092 0.683225870132446 0.999536712157815 hm5C_site_42397 DeepMRMD:0.683225870132446;iRNA_m5C:0.999536712157815 42398 chr22 32234829 32234829 1 + G A UCEC 32234816 + 32234796 32234836 41 CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCCGAGGTGAG CGCCCCCGCTGAGCAGTAGCCCACTCTATAGCCAAGGTGAG < 41bp 1 0.127601133035335 1 0.0609638094902039 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32234816 chr22:32234829 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_43408 0 0 0 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_42398 DeepMRMD:1;iRNA_m5C:0.999536712157815 42399 chr6 87967461 87967461 1 + G T UCEC 87967481 + 87967461 87967501 41 GATGGGAAATTTATCTGTAGCAGGTGTTACAGGGCTTTTAC TATGGGAAATTTATCTGTAGCAGGTGTTACAGGGCTTTTAC < 41bp 1 0.588065172378051 1 0.582226157188416 experiment 0.823869655243898 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF292 ENSG00000188994 CDS Human protein_coding chr6:87967481 chr6:87967461 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_43409 0 0 1 0 0 Cytosol 1 0.500231643920406 0.835547685623168 0.999536712159188 hm5C_site_42399 DeepMRMD:0.835547685623168;iRNA_m5C:0.999536712159188 42400 chr20 45801367 45801367 1 + C A UCEC 45801382 + 45801362 45801402 41 AACTTCTCCGCTGACGGCTTCCACAGTTCGGCCCCAGGAGC AACTTATCCGCTGACGGCTTCCACAGTTCGGCCCCAGGAGC < 41bp 1 0.341977965580052 1 0.229807406663895 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801382 chr20:45801367 nonsynonymous SNV 0.890 5 6 hm5C_associated_SNPs_43410 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_42400 DeepMRMD:1;iRNA_m5C:0.999536712157814 42401 chr17 46189967 46189967 1 + G A UCEC 46189985 + 46189965 46190005 41 CCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT CCAAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATT < 41bp 1 0.139737931330738 1 0.290364325046539 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX11 ENSG00000002919 CDS Human protein_coding chr17:46189985 chr17:46189967 nonsynonymous SNV 0.997 3 3 hm5C_associated_SNPs_43411 0 0 1 0 2 Cytosol 1 0.500231643920939 1 0.999536712158122 hm5C_site_42401 DeepMRMD:1;iRNA_m5C:0.999536712158122 42402 chr9 20990263 20990263 1 + C A UCEC 20990248 + 20990228 20990268 41 AGGAGAATGGCCCGGCTGGGCCAGTACCAAGCTTCCTTGGC AGGAGAATGGCCCGGCTGGGCCAGTACCAAGCTTCATTGGC < 41bp 1 0.193354806810038 1 0.0608411133289337 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990248 chr9:20990263 nonsynonymous SNV 0.991 0 36 hm5C_associated_SNPs_43412 0 0 0 0 0 Ribosome 1 0.500231643784035 1 0.99953671243193 hm5C_site_42402 DeepMRMD:1;iRNA_m5C:0.99953671243193 42403 chr9 20990263 20990263 1 + C A UCEC 20990249 + 20990229 20990269 41 GGAGAATGGCCCGGCTGGGCCAGTACCAAGCTTCCTTGGCA GGAGAATGGCCCGGCTGGGCCAGTACCAAGCTTCATTGGCA < 41bp 1 0.379359891178613 1 0.080668181180954 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20990249 chr9:20990263 nonsynonymous SNV 0.991 0 35 hm5C_associated_SNPs_43413 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42403 DeepMRMD:1;iRNA_m5C:0.999536712157815 Systolic blood pressure 42404 chr3 39431984 39431984 1 + A G UCEC 39431995 + 39431975 39432015 41 GGCCTTTGGAAAGGGATGTCCCCTGTAAGCTGCCATCTGGG GGCCTTTGGGAAGGGATGTCCCCTGTAAGCTGCCATCTGGG < 41bp 1 0.316680767814767 1 0.236603528261185 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431995 chr3:39431984 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_43414 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_42404 DeepMRMD:1;iRNA_m5C:0.999536712157815 42405 chr15 99434709 99434709 1 + C T UCEC 99434698 + 99434678 99434718 41 CTATGCCGGTGTCTGTGTGCCTGCCTGCCCGCCCAACACCT CTATGCCGGTGTCTGTGTGCCTGCCTGCCCGTCCAACACCT < 41bp 1 0.271794796795462 1 0.300463676452637 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99434698 chr15:99434709 nonsynonymous SNV 0.878 2 32 hm5C_associated_SNPs_43415 0 0 1 0 0 Endoplasmic reticulum 1 0.500231645963398 1 0.999536708073204 hm5C_site_42405 DeepMRMD:1;iRNA_m5C:0.999536708073204 42406 chr2 242430978 242430978 1 + C T UCEC 242430986 + 242430966 242431006 41 GAAGATGATGCTCGGGGTGTCCGCAGCTCCCTGGAGGGGCA GAAGATGATGCTTGGGGTGTCCGCAGCTCCCTGGAGGGGCA < 41bp 1 0.622991475664743 1 0.37952932715416 experiment 0.754017048670514 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FARP2 ENSG00000006607 CDS Human protein_coding chr2:242430986 chr2:242430978 nonsynonymous SNV 0.001 2 13 hm5C_associated_SNPs_43416 0 0 0 0 1 Nucleus 1 0.500231649957687 1 0.999536700084627 hm5C_site_42406 DeepMRMD:1;iRNA_m5C:0.999536700084627 42407 chr9 137702149 137702149 1 + G T UCEC 137702152 + 137702132 137702172 41 GCAAGGGGGACAAAGGAGAACAGGTAAGTATTGGCACGGGG GCAAGGGGGACAAAGGATAACAGGTAAGTATTGGCACGGGG < 41bp 1 0.536916276667207 1 0.546790838241577 experiment 0.926167446665587 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137702152 chr9:137702149 stopgain 0.960 0 18 hm5C_associated_SNPs_43417 0 0 0 0 2 Nucleus 1 0.500231643962707 0.906418323516846 0.999536712074586 hm5C_site_42407 DeepMRMD:0.906418323516846;iRNA_m5C:0.999536712074586 42408 chr6 31593365 31593365 1 + T C UCEC 31593346 + 31593326 31593366 41 GGTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTA GGTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCA < 41bp 1 0.221976513151579 1 0.064331442117691 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593346 chr6:31593365 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_43418 0 0 1 1 1 Ribosome 1 0.500231627068829 1 0.999536745862342 hm5C_site_42408 DeepMRMD:1;iRNA_m5C:0.999536745862342 42409 chr6 31593365 31593365 1 + T C UCEC 31593347 + 31593327 31593367 41 GTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTAC GTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCAC < 41bp 1 0.162167109191247 1 0.0985339879989624 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593347 chr6:31593365 nonsynonymous SNV 1.000 2 39 hm5C_associated_SNPs_43419 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42409 DeepMRMD:1;iRNA_m5C:0.999536712157815 42410 chr6 31593365 31593365 1 + T C UCEC 31593348 + 31593328 31593368 41 TGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACC TGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACC < 41bp 1 0.272825118414368 1 0.0827682912349701 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593348 chr6:31593365 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_43420 0 0 1 1 1 Ribosome 1 0.500231650771996 1 0.999536698456008 hm5C_site_42410 DeepMRMD:1;iRNA_m5C:0.999536698456008 42411 chr6 31593365 31593365 1 + T C UCEC 31593350 + 31593330 31593370 41 GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACCGC < 41bp 1 0.592297399667199 1 0.354897022247314 experiment 0.815405200665601 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593350 chr6:31593365 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_43421 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42411 DeepMRMD:1;iRNA_m5C:0.999536712157815 42412 chr6 31593365 31593365 1 + T C UCEC 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACCGCG < 41bp 1 0.389244006537744 1 0.125841170549393 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593365 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_43422 0 0 1 1 1 Ribosome 1 0.500231643920892 1 0.999536712158217 hm5C_site_42412 DeepMRMD:1;iRNA_m5C:0.999536712158217 42413 chr6 31593365 31593365 1 + T C UCEC 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACCGCGG < 41bp 1 0.356399506881867 1 0.149693250656128 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593365 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_43423 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42413 DeepMRMD:1;iRNA_m5C:0.999536712157815 42414 chr6 31593365 31593365 1 + T C UCEC 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCCACCGCGGA < 41bp 1 0.308111394465683 1 0.435111731290817 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593365 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_43424 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42414 DeepMRMD:1;iRNA_m5C:0.999536712157815 42415 chr15 81214444 81214444 1 + A C UCEC 81214448 + 81214428 81214468 41 CACATTCCACTGGGAAAATTCTATAACAACCGAGCACATTC CACATTCCACTGGGAACATTCTATAACAACCGAGCACATTC < 41bp 1 0.331032344640162 1 0.193852066993713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81214448 chr15:81214444 nonsynonymous SNV 0.985 0 17 hm5C_associated_SNPs_43425 0 0 0 0 2 Nucleus 1 0.500231643921784 1 0.999536712156432 hm5C_site_42415 DeepMRMD:1;iRNA_m5C:0.999536712156432 42416 chr17 57725631 57725631 1 + T A UCEC 57725620 + 57725600 57725640 41 GCAAAATCGTGTGGTGGGAGCTATGCAGCTATATTCTGTAG GCAAAATCGTGTGGTGGGAGCTATGCAGCTAAATTCTGTAG < 41bp 1 0.192736770458388 1 0.0679200887680054 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57725620 chr17:57725631 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_43426 0 0 1 0 1 Nucleus 1 0.500229112705247 1 0.999541774589505 hm5C_site_42416 DeepMRMD:1;iRNA_m5C:0.999541774589505 42417 chr1 193205402 193205402 1 + G A UCEC 193205390 + 193205370 193205410 41 ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCGTTTTTGTG ACTTTTCTACTTGTAGGGACCGCGTTGTAGCCATTTTTGTG < 41bp 1 0.677150237417394 1 0.144496351480484 experiment 0.645699525165212 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205390 chr1:193205402 nonsynonymous SNV 0.967 3 33 hm5C_associated_SNPs_43427 1 0 1 0 2 Ribosome 1 0.500231643839538 1 0.999536712320924 hm5C_site_42417 DeepMRMD:1;iRNA_m5C:0.999536712320924 Parathyroid carcinoma Parathyroid carcinoma 42418 chr4 30725911 30725911 1 + C A UCEC 30725920 + 30725900 30725940 41 CACTGTGGAGGCTTCTAAGCCAAATGGACAGAGGTATGATA CACTGTGGAGGATTCTAAGCCAAATGGACAGAGGTATGATA < 41bp 1 0.110352606496641 1 0.678548336029053 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PCDH7 ENSG00000169851 CDS Human protein_coding chr4:30725920 chr4:30725911 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_43428 0 0 1 0 0 Ribosome 1 0.500231646726043 0.642903327941894 0.999536706547914 hm5C_site_42418 DeepMRMD:0.642903327941894;iRNA_m5C:0.999536706547914 42419 chr12 57910042 57910042 1 + G A UCEC 57910022 + 57910002 57910042 41 CTGGTGATAACTTTGTTGTTCTCCAGGCAAAAACGTCCCCG CTGGTGATAACTTTGTTGTTCTCCAGGCAAAAACGTCCCCA < 41bp 1 0.426891761479291 1 0.801587820053101 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57910022 chr12:57910042 synonymous SNV . 0 41 hm5C_associated_SNPs_43429 0 0 1 0 2 Cytosol 1 0.500231643920995 0.396824359893798 0.999536712158009 hm5C_site_42419 DeepMRMD:0.396824359893798;iRNA_m5C:0.999536712158009 42420 chr21 17250136 17250136 1 + G T UCEC 17250131 + 17250111 17250151 41 TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG TAAGAAATTAAATGAGCAAGCCGCATAACTCTTCGAATCTG < 41bp 1 0.480914094501665 1 0.29080206155777 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP25 ENSG00000155313 CDS Human protein_coding chr21:17250131 chr21:17250136 stopgain 0.937 1 26 hm5C_associated_SNPs_43430 0 0 1 0 1 Cytosol 1 0.500231644167303 1 0.999536711665393 hm5C_site_42420 DeepMRMD:1;iRNA_m5C:0.999536711665393 42421 chr11 20066886 20066886 1 + G A UCEC 20066902 + 20066882 20066922 41 TACCGGAGTTTGCCGAGGCCCAGTAAGTCCAACAGCCGGAA TACCAGAGTTTGCCGAGGCCCAGTAAGTCCAACAGCCGGAA < 41bp 1 0.366877828437474 1 0.44624724984169 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20066902 chr11:20066886 nonsynonymous SNV 0.997 4 5 hm5C_associated_SNPs_43431 0 0 0 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_42421 DeepMRMD:1;iRNA_m5C:0.999536712157814 42422 chr12 82796816 82796816 1 + C T UCEC 82796830 + 82796810 82796850 41 ACTTTGCGAATATTTACCTCCAACTCTGAAATCAAGGGAGT ACTTTGTGAATATTTACCTCCAACTCTGAAATCAAGGGAGT < 41bp 1 0.222548502215531 1 0.104862928390503 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL25 ENSG00000127720 CDS Human protein_coding chr12:82796830 chr12:82796816 stopgain 0.958 1 7 hm5C_associated_SNPs_43432 0 0 0 0 2 cytosol 1 0.500231643921186 1 0.999536712157628 hm5C_site_42422 DeepMRMD:1;iRNA_m5C:0.999536712157628 42423 chrX 24755785 24755785 1 + G T UCEC 24755775 + 24755755 24755795 41 ATGGGTTTGAACTGGAAGTACTACTGCAGAGAATTAATGTG ATGGGTTTGAACTGGAAGTACTACTGCAGATAATTAATGTG < 41bp 1 0.15503892297646 1 0.0880051255226135 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLA1 ENSG00000101868 CDS Human protein_coding chrX:24755775 chrX:24755785 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_43433 0 0 1 0 1 chromatin 1 0.500231664719541 1 0.999536670560919 hm5C_site_42423 DeepMRMD:1;iRNA_m5C:0.999536670560919 42424 chr7 99123772 99123772 1 + G A UCEC 99123761 + 99123741 99123781 41 AACTTTATTCAGCATCGGCGCATCCACACTGGAGAAAAACC AACTTTATTCAGCATCGGCGCATCCACACTGAAGAAAAACC < 41bp 1 0.0268601808295762 1 0.207065403461456 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZKSCAN5 ENSG00000196652 CDS Human protein_coding chr7:99123761 chr7:99123772 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_43434 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42424 DeepMRMD:1;iRNA_m5C:0.999536712157815 42425 chr1 45270018 45270018 1 + G T UCEC 45270016 + 45269996 45270036 41 CCTCTCCCATGACAGCGGAACAGAACCCGGCCCCCCTGGCC CCTCTCCCATGACAGCGGAACATAACCCGGCCCCCCTGGCC < 41bp 1 0.266124910567363 1 0.0915399789810181 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270016 chr1:45270018 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_43435 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_42425 DeepMRMD:1;iRNA_m5C:0.999536712157815 42426 chr2 216960888 216960888 1 + G T UCEC 216960884 + 216960864 216960904 41 GAGAAAACAGATGAGGAGCCCGGAGAATCAGAAGGTGGAGA GAGAAAACAGATGAGGAGCCCGGATAATCAGAAGGTGGAGA < 41bp 1 0.364744931062176 1 0.348173409700394 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM169 ENSG00000163449 CDS Human protein_coding chr2:216960884 chr2:216960888 stopgain 0.051 0 25 hm5C_associated_SNPs_43436 0 0 0 0 1 Nucleus 1 0.50023164392109 1 0.999536712157819 hm5C_site_42426 DeepMRMD:1;iRNA_m5C:0.999536712157819 42427 chr1 44684034 44684034 1 + G A UCEC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACAATGAT < 41bp 1 0.536179666652938 1 0.355637282133102 experiment 0.927640666694123 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684034 nonsynonymous SNV 0.948 1 36 hm5C_associated_SNPs_43437 0 0 1 0 2 chromatin 1 0.500231547170504 1 0.999536905658992 hm5C_site_42427 DeepMRMD:1;iRNA_m5C:0.999536905658992 42428 chr6 57012307 57012307 1 + A C UCEC 57012315 + 57012295 57012335 41 CCTGGTTCTGTGAATGCAATCAGCGATTCCCAAGTGAAGAT CCTGGTTCTGTGCATGCAATCAGCGATTCCCAAGTGAAGAT < 41bp 1 0.532358003858292 1 0.562111616134644 experiment 0.935283992283417 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF451 ENSG00000112200 CDS Human protein_coding chr6:57012315 chr6:57012307 nonsynonymous SNV 0.999 4 13 hm5C_associated_SNPs_43438 0 0 1 0 0 chromatin 1 0.500231660610153 0.875776767730712 0.999536678779693 hm5C_site_42428 DeepMRMD:0.875776767730712;iRNA_m5C:0.999536678779693 42429 chr3 32188122 32188122 1 + G T UCEC 32188133 + 32188113 32188153 41 GGCAGCAAAGTAATGGAGAACGGCCTTCTCTTCAAAGAACT GGCAGCAAATTAATGGAGAACGGCCTTCTCTTCAAAGAACT < 41bp 1 0.258488698396939 1 0.441197991371155 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GPD1L ENSG00000152642 CDS Human protein_coding chr3:32188133 chr3:32188122 nonsynonymous SNV 0.969 0 10 hm5C_associated_SNPs_43439 0 0 1 0 1 Cytosol 1 0.500231643921147 1 0.999536712157706 hm5C_site_42429 DeepMRMD:1;iRNA_m5C:0.999536712157706 42430 chr13 111160550 111160550 1 + C T UCEC 111160562 + 111160542 111160582 41 TTGTGGATCGGATATTCCTTCCTCATGGTATGTGGTATTTG TTGTGGATTGGATATTCCTTCCTCATGGTATGTGGTATTTG < 41bp 1 0.0890696379990003 1 0.0538565814495087 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111160562 chr13:111160550 synonymous SNV . 0 9 hm5C_associated_SNPs_43441 0 0 0 0 1 Cytosol 1 0.500229790728841 1 0.999540418542318 hm5C_site_42430 DeepMRMD:1;iRNA_m5C:0.999540418542318 42431 chr10 93713510 93713510 1 + A C UCEC 93713504 + 93713484 93713524 41 ATTCTTTTAGACTCTTCAGGCAGCTGAATTGATTGACTCAG ATTCTTTTAGACTCTTCAGGCAGCTGCATTGATTGACTCAG < 41bp 1 0.311959756668399 1 0.54978221654892 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93713504 chr10:93713510 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_43442 0 0 1 1 1 Nucleus 1 0.500231642824058 0.90043556690216 0.999536714351885 hm5C_site_42431 DeepMRMD:0.90043556690216;iRNA_m5C:0.999536714351885 42432 chrX 47774361 47774361 1 + T C UCEC 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTCCTGGGAA < 41bp 1 0.260690523988697 1 0.597433686256409 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774361 nonsynonymous SNV 0.762 0 34 hm5C_associated_SNPs_43443 0 0 0 0 1 cytosol 1 0.500231643921092 0.805132627487182 0.999536712157815 hm5C_site_42432 DeepMRMD:0.805132627487182;iRNA_m5C:0.999536712157815 42433 chr12 50452864 50452864 1 + G T UCEC 50452871 + 50452851 50452891 41 GCCAAGTCTCCAAGAATGACCTGTATCATGCTGGGGAGCTG GCCAAGTCTCCAATAATGACCTGTATCATGCTGGGGAGCTG < 41bp 1 0.515062711689868 1 0.0850111842155457 experiment 0.969874576620263 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50452871 chr12:50452864 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_43444 0 0 0 0 1 exosome 1 0.500231126008245 1 0.99953774798351 hm5C_site_42433 DeepMRMD:1;iRNA_m5C:0.99953774798351 42434 chr7 44741208 44741208 1 + C T UCEC 44741191 + 44741171 44741211 41 GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTC GCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGTTTC < 41bp 1 0.184657163958509 1 0.630326449871063 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44741191 chr7:44741208 nonsynonymous SNV 0.990 1 38 hm5C_associated_SNPs_43445 0 0 1 0 2 Nucleus 1 0.500229138622979 0.739347100257874 0.999541722754043 hm5C_site_42434 DeepMRMD:0.739347100257874;iRNA_m5C:0.999541722754043 42435 chr7 116422057 116422057 1 + G T UCEC 116422045 + 116422025 116422065 41 ACTCTCTTTGACTGCAGAATCCAACTGTAAAAGATCTTATT ACTCTCTTTGACTGCAGAATCCAACTGTAAAATATCTTATT < 41bp 1 0.119440432429808 1 0.394179463386536 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MET ENSG00000105976 CDS Human protein_coding chr7:116422045 chr7:116422057 nonsynonymous SNV 1.000 5 33 hm5C_associated_SNPs_43446 0 0 1 0 2 Cytosol 1 0.500231644019675 1 0.999536711960651 hm5C_site_42435 DeepMRMD:1;iRNA_m5C:0.999536711960651 42436 chr22 18979453 18979453 1 + G T UCEC 18979435 + 18979415 18979455 41 AGGCCCGTCCTGGTGGAGTTCACCCTGCTGGAGATGGAGAA AGGCCCGTCCTGGTGGAGTTCACCCTGCTGGAGATGGATAA < 41bp 1 0.277095809733693 1 0.175233155488968 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979435 chr22:18979453 . . 0 39 hm5C_associated_SNPs_43447 0 0 0 0 1 unknown 1 0.500231643921106 1 0.999536712157788 hm5C_site_42436 DeepMRMD:1;iRNA_m5C:0.999536712157788 42437 chr22 18979453 18979453 1 + G T UCEC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGATAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC < 41bp 1 0.103882057391502 1 0.0436413884162903 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979453 . . 0 8 hm5C_associated_SNPs_43448 0 0 0 0 1 unknown 1 0.500231636786437 1 0.999536726427126 hm5C_site_42437 DeepMRMD:1;iRNA_m5C:0.999536726427126 42438 chr2 233684608 233684608 1 + G A UCEC 233684612 + 233684592 233684632 41 AAGAGGAAGAAAGACAGCAGCAAGAAGAAGCTCTTAGAAGA AAGAGGAAGAAAGACAACAGCAAGAAGAAGCTCTTAGAAGA < 41bp 1 0.685237559547541 1 0.616708099842072 experiment 0.629524880904917 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233684612 chr2:233684608 synonymous SNV . 0 17 hm5C_associated_SNPs_43450 0 0 1 0 1 Nucleus 1 0.500231643261228 0.766583800315856 0.999536713477543 hm5C_site_42438 DeepMRMD:0.766583800315856;iRNA_m5C:0.999536713477543 42439 chr2 233684608 233684608 1 + G A UCEC 233684622 + 233684602 233684642 41 AAGACAGCAGCAAGAAGAAGCTCTTAGAAGACTGGAAGAGA AAGACAACAGCAAGAAGAAGCTCTTAGAAGACTGGAAGAGA < 41bp 1 0.123802873006713 1 0.256164371967316 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233684622 chr2:233684608 synonymous SNV . 0 7 hm5C_associated_SNPs_43451 0 0 1 0 1 Nucleus 1 0.50023164385273 1 0.999536712294539 hm5C_site_42439 DeepMRMD:1;iRNA_m5C:0.999536712294539 42440 chr6 36442601 36442601 1 + C A UCEC 36442596 + 36442576 36442616 41 TGACTATGCCTCTCAGCCAGCAAATCTTCAGTTCCCTCACA TGACTATGCCTCTCAGCCAGCAAATATTCAGTTCCCTCACA < 41bp 1 0.19448689921246 1 0.230979084968567 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KCTD20 ENSG00000112078 CDS Human protein_coding chr6:36442596 chr6:36442601 nonsynonymous SNV 0.983 0 26 hm5C_associated_SNPs_43452 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42440 DeepMRMD:1;iRNA_m5C:0.999536712157815 42441 chr1 162745466 162745466 1 + G T UCEC 162745469 + 162745449 162745489 41 TTTCTTAAGGAGATAAAGATCATGTCTCGGCTCAAGGACCC TTTCTTAAGGAGATAAATATCATGTCTCGGCTCAAGGACCC < 41bp 1 0.37651646319865 1 0.130233079195023 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162745469 chr1:162745466 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_43453 0 0 0 0 1 nucleolus 1 0.50023164392109 1 0.99953671215782 hm5C_site_42441 DeepMRMD:1;iRNA_m5C:0.99953671215782 42442 chr4 144438535 144438535 1 + A C UCEC 144438549 + 144438529 144438569 41 CCTGGAAAGCAAAAGGAAATCCAAGAACCAGATCCTACCTA CCTGGACAGCAAAAGGAAATCCAAGAACCAGATCCTACCTA < 41bp 1 0.385787882207125 1 0.492017060518265 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144438549 chr4:144438535 nonsynonymous SNV 0.998 2 7 hm5C_associated_SNPs_43454 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42442 DeepMRMD:1;iRNA_m5C:0.999536712157815 42443 chr3 112713993 112713993 1 + G T UCEC 112714008 + 112713988 112714028 41 ACAAAGAAAATGAATTTTTTCAAAGTTGGAAAACATTTTAC ACAAATAAAATGAATTTTTTCAAAGTTGGAAAACATTTTAC < 41bp 1 0.558361880620527 1 0.761259913444519 experiment 0.883276238758946 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112714008 chr3:112713993 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_43455 0 0 1 0 1 Ribosome 1 0.500231730302071 0.477480173110962 0.999536539395859 hm5C_site_42443 DeepMRMD:0.477480173110962;iRNA_m5C:0.999536539395859 42444 chr5 61778972 61778972 1 + A G UCEC 61778983 + 61778963 61779003 41 TACTCCTCTAATTCAGAGATCACTGGAATTTTCTGTAAGCT TACTCCTCTGATTCAGAGATCACTGGAATTTTCTGTAAGCT < 41bp 1 0.152956426970439 1 0.132145136594772 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IPO11 ENSG00000086200 CDS Human protein_coding chr5:61778983 chr5:61778972 synonymous SNV . 0 10 hm5C_associated_SNPs_43456 0 0 1 0 1 Ribosome 1 0.500231643863792 1 0.999536712272415 hm5C_site_42444 DeepMRMD:1;iRNA_m5C:0.999536712272415 42445 chr1 236347187 236347187 1 + G T UCEC 236347193 + 236347173 236347213 41 TTTCTTCCGAGTTAGAAATCCTACAAAGGACCTTGTAAGTA TTTCTTCCGAGTTATAAATCCTACAAAGGACCTTGTAAGTA < 41bp 1 0.616696752792456 1 0.232986807823181 experiment 0.766606494415089 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GPR137B ENSG00000077585 CDS Human protein_coding chr1:236347193 chr1:236347187 nonsynonymous SNV 0.847 4 15 hm5C_associated_SNPs_43457 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42445 DeepMRMD:1;iRNA_m5C:0.999536712157815 42446 chr3 179424772 179424772 1 + G T UCEC 179424778 + 179424758 179424798 41 TCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAATGA TCTCCATACAGAAATCAGGACCCAGACACGTGGGAAAATGA < 41bp 1 0.048759590040347 1 0.0817404985427856 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179424778 chr3:179424772 nonsynonymous SNV 0.995 2 15 hm5C_associated_SNPs_43458 0 0 1 0 2 Ribosome 1 0.500231643999189 1 0.999536712001623 hm5C_site_42446 DeepMRMD:1;iRNA_m5C:0.999536712001623 42447 chr17 65908108 65908108 1 + A G UCEC 65908112 + 65908092 65908132 41 GAAGAAATTAGAGGAGAGACCAGTTAATAAATGTAGTGATC GAAGAAATTAGAGGAGGGACCAGTTAATAAATGTAGTGATC < 41bp 1 0.0947891932595961 1 0.224953204393387 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65908112 chr17:65908108 nonsynonymous SNV 0.210 0 17 hm5C_associated_SNPs_43459 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42447 DeepMRMD:1;iRNA_m5C:0.999536712157815 42448 chr19 18245425 18245425 1 + G A UCEC 18245431 + 18245411 18245451 41 CACATCAAGCTCACGGACTTCGGCCTGTCCAAGATCGGCCT CACATCAAGCTCACAGACTTCGGCCTGTCCAAGATCGGCCT < 41bp 1 0.325047080313105 1 0.24273407459259 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAST3 ENSG00000099308 CDS Human protein_coding chr19:18245431 chr19:18245425 synonymous SNV . 0 15 hm5C_associated_SNPs_43460 0 0 0 0 2 Cytosol 1 0.50023164392056 1 0.99953671215888 hm5C_site_42448 DeepMRMD:1;iRNA_m5C:0.99953671215888 42449 chr17 30293190 30293190 1 + G A UCEC 30293195 + 30293175 30293215 41 TCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAAATG TCATTTGCAGCTTACATTTACTGGTTTCTTCCACAAAAATG < 41bp 1 0.506117204126173 1 0.159992009401321 experiment 0.987765591747654 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30293195 chr17:30293190 synonymous SNV . 0 16 hm5C_associated_SNPs_43461 0 0 1 0 2 Ribosome 1 0.500231652511813 1 0.999536694976375 hm5C_site_42449 DeepMRMD:1;iRNA_m5C:0.999536694976375 42450 chr5 137734038 137734038 1 + C T UCEC 137734024 + 137734004 137734044 41 TCCTGGCCAATGTTGGGGACCAGTTCTGCCAGCTCGTAATG TCCTGGCCAATGTTGGGGACCAGTTCTGCCAGCTTGTAATG < 41bp 1 0.145528672689493 1 0.0355956256389618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDM3B ENSG00000120733 CDS Human protein_coding chr5:137734024 chr5:137734038 synonymous SNV . 0 35 hm5C_associated_SNPs_43462 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_42450 DeepMRMD:1;iRNA_m5C:0.999536712157815 42451 chr16 30995246 30995246 1 + G A UCEC 30995266 + 30995246 30995286 41 GTGGACGAGGAGATCACCTACGACTACAAGTTCCCACTGGA ATGGACGAGGAGATCACCTACGACTACAAGTTCCCACTGGA < 41bp 1 0.196352729992452 1 0.392379075288773 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SETD1A ENSG00000099381 CDS Human protein_coding chr16:30995266 chr16:30995246 nonsynonymous SNV 0.992 3 1 hm5C_associated_SNPs_43463 0 0 1 0 1 Cytosol 1 0.50023164305558 1 0.99953671388884 hm5C_site_42451 DeepMRMD:1;iRNA_m5C:0.99953671388884 42452 chrX 102632699 102632699 1 + A G UCEC 102632708 + 102632688 102632728 41 TGCGTATCCTTATGGGGGAGCTCTCTAATCACCATGACCAT TGCGTATCCTTGTGGGGGAGCTCTCTAATCACCATGACCAT < 41bp 1 0.149673175795602 1 0.0611779689788818 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632708 chrX:102632699 nonsynonymous SNV 0.995 0 12 hm5C_associated_SNPs_43464 0 0 1 0 0 Cytosol 1 0.500231644557182 1 0.999536710885636 hm5C_site_42452 DeepMRMD:1;iRNA_m5C:0.999536710885636 42453 chrX 102632699 102632699 1 + A G UCEC 102632712 + 102632692 102632732 41 TATCCTTATGGGGGAGCTCTCTAATCACCATGACCATCATG TATCCTTGTGGGGGAGCTCTCTAATCACCATGACCATCATG < 41bp 1 0.468706176687246 1 0.284228891134262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632712 chrX:102632699 nonsynonymous SNV 0.995 0 8 hm5C_associated_SNPs_43466 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42453 DeepMRMD:1;iRNA_m5C:0.999536712157815 42454 chr19 11096047 11096047 1 + G C UCEC 11096032 + 11096012 11096052 41 ATGGGGATGCGGTCAGGGGGCCATGCTGGGATGGGGCCCCC ATGGGGATGCGGTCAGGGGGCCATGCTGGGATGGGCCCCCC < 41bp 1 0.305293480083015 1 0.447842568159103 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11096032 chr19:11096047 synonymous SNV . 0 36 hm5C_associated_SNPs_43467 0 0 1 0 2 Nucleus 1 0.500231643848334 1 0.999536712303333 hm5C_site_42454 DeepMRMD:1;iRNA_m5C:0.999536712303333 42455 chr11 65418141 65418141 1 + C T UCEC 65418138 + 65418118 65418158 41 GAGAGTGCAGCCACACGCCTCCTCCTGGCCTCCAAGCAGCT GAGAGTGCAGCCACACGCCTCCTTCTGGCCTCCAAGCAGCT < 41bp 1 0.00730562111887265 1 0.0521169900894165 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65418138 chr11:65418141 synonymous SNV . 0 24 hm5C_associated_SNPs_43468 0 0 0 0 0 Ribosome 1 0.500231612804771 1 0.999536774390458 hm5C_site_42455 DeepMRMD:1;iRNA_m5C:0.999536774390458 42456 chr11 65418141 65418141 1 + C T UCEC 65418139 + 65418119 65418159 41 AGAGTGCAGCCACACGCCTCCTCCTGGCCTCCAAGCAGCTG AGAGTGCAGCCACACGCCTCCTTCTGGCCTCCAAGCAGCTG < 41bp 1 0.104993148114676 1 0.0834995210170746 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65418139 chr11:65418141 synonymous SNV . 0 23 hm5C_associated_SNPs_43469 0 0 0 0 0 Ribosome 1 0.500231644360993 1 0.999536711278013 hm5C_site_42456 DeepMRMD:1;iRNA_m5C:0.999536711278013 42457 chr7 150765087 150765087 1 + G A UCEC 150765104 + 150765084 150765124 41 CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG CACATGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG < 41bp 1 0.569239630347865 1 0.341610968112946 experiment 0.86152073930427 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765104 chr7:150765087 nonsynonymous SNV 0.834 3 4 hm5C_associated_SNPs_43470 0 0 1 0 1 Ribosome 1 0.500231643727906 1 0.999536712544188 hm5C_site_42457 DeepMRMD:1;iRNA_m5C:0.999536712544188 42458 chr7 150765087 150765087 1 + G A UCEC 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACATGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC < 41bp 1 0.528736749642333 1 0.646806120872498 experiment 0.942526500715334 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765087 nonsynonymous SNV 0.834 3 3 hm5C_associated_SNPs_43471 0 0 1 0 1 Ribosome 1 0.500231643921092 0.706387758255004 0.999536712157816 hm5C_site_42458 DeepMRMD:0.706387758255004;iRNA_m5C:0.999536712157816 42459 chr19 36216171 36216171 1 + C T UCEC 36216159 + 36216139 36216179 41 AACGTGTGGCTGATGGGGGGCCTGAGTGTGCTCACCTCTGT AACGTGTGGCTGATGGGGGGCCTGAGTGTGCTTACCTCTGT < 41bp 1 0.138730095468439 1 0.114303767681122 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216159 chr19:36216171 synonymous SNV . 0 33 hm5C_associated_SNPs_43473 0 0 1 0 2 chromatin 1 0.500231643921129 1 0.999536712157741 hm5C_site_42459 DeepMRMD:1;iRNA_m5C:0.999536712157741 42460 chr19 36216171 36216171 1 + C T UCEC 36216160 + 36216140 36216180 41 ACGTGTGGCTGATGGGGGGCCTGAGTGTGCTCACCTCTGTG ACGTGTGGCTGATGGGGGGCCTGAGTGTGCTTACCTCTGTG < 41bp 1 0.323519946547047 1 0.199014574289322 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216160 chr19:36216171 synonymous SNV . 0 32 hm5C_associated_SNPs_43474 0 0 1 0 2 chromatin 1 0.500231645950133 1 0.999536708099734 hm5C_site_42460 DeepMRMD:1;iRNA_m5C:0.999536708099734 42461 chr19 36216171 36216171 1 + C T UCEC 36216189 + 36216169 36216209 41 CTCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT CTTACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCT < 41bp 1 0.0165121796073908 1 0.0886060893535614 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216189 chr19:36216171 synonymous SNV . 0 3 hm5C_associated_SNPs_43475 0 0 1 0 2 chromatin 1 0.500231645572902 1 0.999536708854195 hm5C_site_42461 DeepMRMD:1;iRNA_m5C:0.999536708854195 42462 chr19 36216171 36216171 1 + C T UCEC 36216190 + 36216170 36216210 41 TCACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG TTACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTG < 41bp 1 0.043386661082036 1 0.14202806353569 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216190 chr19:36216171 synonymous SNV . 0 2 hm5C_associated_SNPs_43476 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42462 DeepMRMD:1;iRNA_m5C:0.999536712157815 42463 chr19 36216171 36216171 1 + C T UCEC 36216191 + 36216171 36216211 41 CACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT TACCTCTGTGCCAGGGGGCCCCCCGATGGTGTGCTTGCTGT < 41bp 1 0.0999940781893133 1 0.231186151504517 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216191 chr19:36216171 synonymous SNV . 0 1 hm5C_associated_SNPs_43477 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42463 DeepMRMD:1;iRNA_m5C:0.999536712157815 42464 chr17 29560163 29560163 1 + A G UCEC 29560175 + 29560155 29560195 41 TGGTCACAATGATGGGTGATCAAGGAGAACTCCCTATAGCG TGGTCACAGTGATGGGTGATCAAGGAGAACTCCCTATAGCG < 41bp 1 0.548254265308645 1 0.869936347007751 experiment 0.903491469382709 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29560175 chr17:29560163 nonsynonymous SNV 0.997 3 9 hm5C_associated_SNPs_43478 0 0 1 0 1 Nucleus 1 0.500231697194687 0.260127305984498 0.999536605610626 hm5C_site_42464 DeepMRMD:0.260127305984498;iRNA_m5C:0.999536605610626 42465 chr12 109684161 109684161 1 + G A UCEC 109684168 + 109684148 109684188 41 TCCCAAAATTTACGTGGCAGCCAACAGTGGCGCCCGTATTG TCCCAAAATTTACATGGCAGCCAACAGTGGCGCCCGTATTG < 41bp 1 0.0278769077744773 1 0.190533757209778 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109684168 chr12:109684161 nonsynonymous SNV 0.996 3 14 hm5C_associated_SNPs_43479 0 0 1 0 1 Nucleus 1 0.500231674877148 1 0.999536650245703 hm5C_site_42465 DeepMRMD:1;iRNA_m5C:0.999536650245703 42466 chr11 65269948 65269948 1 + A G UCEC 65269963 + 65269943 65269983 41 AAACAAGATGTTAAGGTATGCTTCAAAAATTTTGTAAATTG AAACAGGATGTTAAGGTATGCTTCAAAAATTTTGTAAATTG < 41bp 1 0.239463709730179 1 0.227199733257294 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65269963 chr11:65269948 . . 0 6 hm5C_associated_SNPs_43480 0 0 1 0 0 unknown 1 0.500229418846178 1 0.999541162307644 hm5C_site_42466 DeepMRMD:1;iRNA_m5C:0.999541162307644 42467 chr11 61913176 61913176 1 + C T UCEC 61913174 + 61913154 61913194 41 GAAGATGGAGGAGGTGGAAGCACGCAGGAAGCAGGAAGAGG GAAGATGGAGGAGGTGGAAGCATGCAGGAAGCAGGAAGAGG < 41bp 1 0.213380652473127 1 0.281797826290131 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout INCENP ENSG00000149503 CDS Human protein_coding chr11:61913174 chr11:61913176 nonsynonymous SNV 0.886 4 23 hm5C_associated_SNPs_43481 0 0 1 0 3 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42467 DeepMRMD:1;iRNA_m5C:0.999536712157815 42468 chr5 43650633 43650633 1 + C T UCEC 43650617 + 43650597 43650637 41 GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCACAACT GGTTGGCACTGATGGGAGGACATTTGTATCCTTCCATAACT < 41bp 1 0.150757218928867 1 0.0311766564846039 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43650617 chr5:43650633 nonsynonymous SNV 0.986 1 37 hm5C_associated_SNPs_43482 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921125 1 0.99953671215775 hm5C_site_42468 DeepMRMD:1;iRNA_m5C:0.99953671215775 42469 chr14 102478260 102478260 1 + G C UCEC 102478245 + 102478225 102478265 41 ATCAGATCACCCAGATCAATCATGGCCTGATGATGGTGGGG ATCAGATCACCCAGATCAATCATGGCCTGATGATGCTGGGG < 41bp 1 0.199437551380704 1 0.387377172708511 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478245 chr14:102478260 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_43483 0 0 1 0 1 Cytosol 1 0.500231654006796 1 0.999536691986407 hm5C_site_42469 DeepMRMD:1;iRNA_m5C:0.999536691986407 42470 chr14 102478260 102478260 1 + G C UCEC 102478250 + 102478230 102478270 41 ATCACCCAGATCAATCATGGCCTGATGATGGTGGGGCCCTC ATCACCCAGATCAATCATGGCCTGATGATGCTGGGGCCCTC < 41bp 1 0.114445987089969 1 0.0786656439304352 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478250 chr14:102478260 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_43484 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_42470 DeepMRMD:1;iRNA_m5C:0.999536712157815 42471 chr14 102478260 102478260 1 + G C UCEC 102478266 + 102478246 102478286 41 ATGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGC ATGGCCTGATGATGCTGGGGCCCTCGGGAAGTGGGAAGAGC < 41bp 1 0.0103675154400143 1 0.0698511302471161 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478266 chr14:102478260 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_43485 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_42471 DeepMRMD:1;iRNA_m5C:0.999536712157815 42472 chr14 102478260 102478260 1 + G C UCEC 102478267 + 102478247 102478287 41 TGGCCTGATGATGGTGGGGCCCTCGGGAAGTGGGAAGAGCA TGGCCTGATGATGCTGGGGCCCTCGGGAAGTGGGAAGAGCA < 41bp 1 0.0227083600055004 1 0.169730126857758 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102478267 chr14:102478260 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_43486 0 0 1 0 1 Cytosol 1 0.500231644618495 1 0.999536710763011 hm5C_site_42472 DeepMRMD:1;iRNA_m5C:0.999536710763011 42473 chr11 62655922 62655922 1 + C A UCEC 62655920 + 62655900 62655940 41 CGTTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC CGTTCTCCGCTGGGCCTGGACTATTCTCCTATATCCGCCAC < 41bp 1 0.352712494989042 1 0.156067341566086 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62655920 chr11:62655922 synonymous SNV . 0 23 hm5C_associated_SNPs_43488 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42473 DeepMRMD:1;iRNA_m5C:0.999536712157815 42474 chr6 158870105 158870105 1 + C T UCEC 158870090 + 158870070 158870110 41 TGCCACGGCAGAATGCTGGCCCACGTCCTCTTGCACGAGTC TGCCACGGCAGAATGCTGGCCCACGTCCTCTTGCATGAGTC < 41bp 1 0.110305141985997 1 0.0962307751178741 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158870090 chr6:158870105 synonymous SNV . 0 36 hm5C_associated_SNPs_43489 0 0 1 0 1 Ribosome 1 0.500380036005021 1 0.999239927989957 hm5C_site_42474 DeepMRMD:1;iRNA_m5C:0.999239927989957 42475 chr19 49129249 49129249 1 + C T UCEC 49129246 + 49129226 49129266 41 CCCCCACCGCCACTGGCTGCCAGCACCCCGCTCCTCCATGG CCCCCACCGCCACTGGCTGCCAGTACCCCGCTCCTCCATGG < 41bp 1 0.551644854966032 1 0.455794751644135 experiment 0.896710290067936 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49129246 chr19:49129249 synonymous SNV . 0 24 hm5C_associated_SNPs_43490 0 0 1 0 0 chromatin 1 0.500231643928024 1 0.999536712143952 hm5C_site_42475 DeepMRMD:1;iRNA_m5C:0.999536712143952 42476 chr7 44100404 44100404 1 + C T UCEC 44100392 + 44100372 44100412 41 GCAGCCGACGACACAGAGATCTCCTTTGACCCCGAGAACCT GCAGCCGACGACACAGAGATCTCCTTTGACCCTGAGAACCT < 41bp 1 0.543316338428649 1 0.592525780200958 experiment 0.913367323142702 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DBNL ENSG00000136279 CDS Human protein_coding chr7:44100392 chr7:44100404 synonymous SNV . 0 33 hm5C_associated_SNPs_43491 0 0 1 0 1 Ribosome 1 0.500231643921031 0.814948439598084 0.999536712157938 hm5C_site_42476 DeepMRMD:0.814948439598084;iRNA_m5C:0.999536712157938 42477 chr17 78704415 78704415 1 + G A UCEC 78704396 + 78704376 78704416 41 TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAGC TCCCTCTGTCCATATATGACCTGCAGACGTGGATGGGCAAC < 41bp 1 0.464800867394147 1 0.165069103240967 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPTOR ENSG00000141564 CDS Human protein_coding chr17:78704396 chr17:78704415 nonsynonymous SNV 0.943 4 40 hm5C_associated_SNPs_43492 0 0 1 0 2 Nucleus 1 0.500235137726181 1 0.999529724547639 hm5C_site_42477 DeepMRMD:1;iRNA_m5C:0.999529724547639 42478 chr12 82752426 82752426 1 + A G UCEC 82752435 + 82752415 82752455 41 TGCAGTTCCTGAGGGATGCCCTGTCCATTTCCAATGCACAT TGCAGTTCCTGGGGGATGCCCTGTCCATTTCCAATGCACAT < 41bp 1 0.286095770889818 1 0.123768657445908 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL25 ENSG00000127720 CDS Human protein_coding chr12:82752435 chr12:82752426 nonsynonymous SNV 0.030 1 12 hm5C_associated_SNPs_43493 0 0 1 0 0 cytosol 1 0.500231650831428 1 0.999536698337145 hm5C_site_42478 DeepMRMD:1;iRNA_m5C:0.999536698337145 42479 chr3 51624525 51624525 1 + A T UCEC 51624531 + 51624511 51624551 41 GGAGGAGGAGGAGGAGGTGGCAGTGGAGGAGTGTGACAGGG GGAGGAGGAGGAGGTGGTGGCAGTGGAGGAGTGTGACAGGG < 41bp 1 0.673402864319379 1 0.747793436050415 experiment 0.653194271361242 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51624531 chr3:51624525 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_43494 0 0 1 0 1 chromatin 1 0.500231643921092 0.50441312789917 0.999536712157815 hm5C_site_42479 DeepMRMD:0.50441312789917;iRNA_m5C:0.999536712157815 42480 chr6 35047371 35047371 1 + G A UCEC 35047379 + 35047359 35047399 41 CTGCAGGACTACGTCCATTCCTTCTTGTCAAGTGGTTACAG CTGCAGGACTACATCCATTCCTTCTTGTCAAGTGGTTACAG < 41bp 1 0.142723593694156 1 0.0201468169689178 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:35047379 chr6:35047371 nonsynonymous SNV 0.944 0 13 hm5C_associated_SNPs_43495 0 0 0 0 2 Cytosol 1 0.500231777859783 1 0.999536444280434 hm5C_site_42480 DeepMRMD:1;iRNA_m5C:0.999536444280434 42481 chr5 53815360 53815360 1 + G T UCEC 53815367 + 53815347 53815387 41 TAGCGCTGTATCAGGGGCATCTGGCTAACTTCCCGGACATC TAGCGCTGTATCATGGGCATCTGGCTAACTTCCCGGACATC < 41bp 1 0.328000873402531 1 0.185053616762161 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815367 chr5:53815360 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_43496 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42481 DeepMRMD:1;iRNA_m5C:0.999536712157815 42482 chr3 132394156 132394156 1 + C T UCEC 132394139 + 132394119 132394159 41 TTTTTACCTTGGATACAATGCAATGCAGGATTTTTTTCCTA TTTTTACCTTGGATACAATGCAATGCAGGATTTTTTTTCTA < 41bp 1 0.302233413658994 1 0.0702444911003113 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBA5 ENSG00000081307 CDS Human protein_coding chr3:132394139 chr3:132394156 nonsynonymous SNV 0.997 4 38 hm5C_associated_SNPs_43497 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_42482 DeepMRMD:1;iRNA_m5C:0.999536712157815 42483 chr3 191074910 191074910 1 + C T UCEC 191074906 + 191074886 191074926 41 ATTTTGCTGTCCTGGAGGACCACACCCTGGCTCACAGCCTG ATTTTGCTGTCCTGGAGGACCACATCCTGGCTCACAGCCTG < 41bp 1 0.544312043828636 1 0.217493265867233 experiment 0.911375912342727 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191074906 chr3:191074910 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_43498 0 0 1 0 1 Ribosome 1 0.500231643948313 1 0.999536712103374 hm5C_site_42483 DeepMRMD:1;iRNA_m5C:0.999536712103374 42484 chr1 183083817 183083817 1 + C A UCEC 183083799 + 183083779 183083819 41 TGTGAGAGGTGCCGAGAGAACTTCTTCCGCCTTGGCAACAA TGTGAGAGGTGCCGAGAGAACTTCTTCCGCCTTGGCAAAAA < 41bp 1 0.366418832019112 1 0.183221280574799 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183083799 chr1:183083817 nonsynonymous SNV 0.879 0 39 hm5C_associated_SNPs_43499 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_42484 DeepMRMD:1;iRNA_m5C:0.999536712157815 42485 chr12 53454463 53454463 1 + C T UCEC 53454477 + 53454457 53454497 41 AGCACCCGGCGACAGGACACCAGGTCCCCCACCTCAGCGCC AGCACCTGGCGACAGGACACCAGGTCCCCCACCTCAGCGCC < 41bp 1 0.559252771692998 1 0.821986556053162 experiment 0.881494456614004 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TNS2 ENSG00000111077 CDS Human protein_coding chr12:53454477 chr12:53454463 nonsynonymous SNV 0.936 3 7 hm5C_associated_SNPs_43500 0 0 0 0 1 cytosol 1 0.500231642910413 0.356026887893676 0.999536714179174 hm5C_site_42485 DeepMRMD:0.356026887893676;iRNA_m5C:0.999536714179174 42486 chr13 111160566 111160566 1 + A G UCEC 111160562 + 111160542 111160582 41 TTGTGGATCGGATATTCCTTCCTCATGGTATGTGGTATTTG TTGTGGATCGGATATTCCTTCCTCGTGGTATGTGGTATTTG < 41bp 1 0.0524580561297106 1 0.0656821429729462 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111160562 chr13:111160566 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_43501 0 0 0 0 1 Cytosol 1 0.500231643919686 1 0.999536712160629 hm5C_site_42486 DeepMRMD:1;iRNA_m5C:0.999536712160629 42487 chr17 38318322 38318322 1 + A C UCEC 38318303 + 38318283 38318323 41 TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGAT TGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGCT < 41bp 1 0.123615591587093 1 0.176970422267914 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318303 chr17:38318322 nonsynonymous SNV 0.997 4 40 hm5C_associated_SNPs_43502 0 0 1 0 2 Ribosome 1 0.500231631644309 1 0.999536736711383 hm5C_site_42487 DeepMRMD:1;iRNA_m5C:0.999536736711383 42488 chr16 630878 630878 1 + C T UCEC 630864 + 630844 630884 41 CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCCGTGCAG CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCTGTGCAG < 41bp 1 0.268281032599417 1 0.435722827911377 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:630864 chr16:630878 synonymous SNV . 0 35 hm5C_associated_SNPs_43503 0 0 1 0 2 Ribosome 1 0.500231643886438 1 0.999536712227123 hm5C_site_42488 DeepMRMD:1;iRNA_m5C:0.999536712227123 42489 chr6 87865453 87865453 1 + C T UCEC 87865437 + 87865417 87865457 41 GCGGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACCGACT GCGGGAGAGCCGGGTACCGGCCGTGGAAGCGGCCACTGACT < 41bp 1 0.421926107750014 1 0.308135598897934 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF292 ENSG00000188994 CDS Human protein_coding chr6:87865437 chr6:87865453 stopgain 0.861 0 37 hm5C_associated_SNPs_43504 0 0 1 0 1 Cytosol 1 0.500233193295415 1 0.999533613409171 hm5C_site_42489 DeepMRMD:1;iRNA_m5C:0.999533613409171 42490 chr17 80529627 80529627 1 + G A UCEC 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG CGCCTTACTCCTACACGCAGCTGATAGTTCAGGCGATTACG < 41bp 1 0.0844609746053686 1 0.0495160222053528 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529627 nonsynonymous SNV 0.894 4 15 hm5C_associated_SNPs_43505 0 0 1 0 1 Cytosol 1 0.500231351651094 1 0.999537296697813 hm5C_site_42490 DeepMRMD:1;iRNA_m5C:0.999537296697813 42491 chr17 21319361 21319361 1 + G A UCEC 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCAGG < 41bp 1 0.620361517549562 1 0.435654580593109 experiment 0.759276964900876 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319361 nonsynonymous SNV 0.966 5 39 hm5C_associated_SNPs_43506 0 0 0 0 0 unknown 1 0.500231688508892 1 0.999536622982216 hm5C_site_42491 DeepMRMD:1;iRNA_m5C:0.999536622982216 42492 chr19 17316780 17316780 1 + C T UCEC 17316775 + 17316755 17316795 41 CCCCGGCACTGCAGGGCGAGCCAGGCGTTGAGCCTGGCCAC CCCCGGCACTGCAGGGCGAGCCAGGTGTTGAGCCTGGCCAC < 41bp 1 0.285306011935405 1 0.464304864406586 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17316775 chr19:17316780 synonymous SNV . 0 26 hm5C_associated_SNPs_43507 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42492 DeepMRMD:1;iRNA_m5C:0.999536712157815 42493 chr6 32944234 32944234 1 + T C UCEC 32944227 + 32944207 32944247 41 TTACTGCAGCTCCTCCAGCCCAGCCCCTTGCCAAGGTATGA TTACTGCAGCTCCTCCAGCCCAGCCCCCTGCCAAGGTATGA < 41bp 1 0.31217805626898 1 0.0967797338962555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32944227 chr6:32944234 nonsynonymous SNV 0.999 2 28 hm5C_associated_SNPs_43509 0 0 1 0 1 Cytosol 1 0.500231643981262 1 0.999536712037476 hm5C_site_42493 DeepMRMD:1;iRNA_m5C:0.999536712037476 42494 chr10 101515437 101515437 1 + G T UCEC 101515429 + 101515409 101515449 41 ACTTTCTTGCTCAGAATATTCCCTAAAGGTAACAGATGTGA ACTTTCTTGCTCAGAATATTCCCTAAAGTTAACAGATGTGA < 41bp 1 0.400543321185126 1 0.151019334793091 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CUTC ENSG00000119929 CDS Human protein_coding chr10:101515429 chr10:101515437 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_43510 0 0 1 3 1 Ribosome 1 0.500231644208772 1 0.999536711582456 hm5C_site_42494 DeepMRMD:1;iRNA_m5C:0.999536711582456 42495 chr10 102798430 102798430 1 + G A UCEC 102798423 + 102798403 102798443 41 CGCCCCTGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGG CGCCCCTGGCTGGGGGCACCCCTGCAGATGGGACTGGTGGG < 41bp 1 0.181633417860062 1 0.643294930458069 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102798423 chr10:102798430 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_43511 0 0 1 0 2 Cytosol 1 0.500231643921092 0.713410139083862 0.999536712157815 hm5C_site_42495 DeepMRMD:0.713410139083862;iRNA_m5C:0.999536712157815 42496 chr16 69279711 69279711 1 + G T UCEC 69279708 + 69279688 69279728 41 GAAACCTAAGCATGCCGGATCTGGAAAACAGGTGAGGTGTA GAAACCTAAGCATGCCGGATCTGTAAAACAGGTGAGGTGTA < 41bp 1 0.340472916733255 1 0.639710545539856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNTB2 ENSG00000168807 CDS Human protein_coding chr16:69279708 chr16:69279711 stopgain 1.000 1 24 hm5C_associated_SNPs_43513 0 0 1 0 1 Ribosome 1 0.500231643921096 0.720578908920288 0.999536712157808 hm5C_site_42496 DeepMRMD:0.720578908920288;iRNA_m5C:0.999536712157808 42497 chr8 104066185 104066185 1 + G A UCEC 104066182 + 104066162 104066202 41 TTGTTCTTGATTCAGAGTATCTCGTCACATTACTGGTAGTA TTGTTCTTGATTCAGAGTATCTCATCACATTACTGGTAGTA < 41bp 1 0.210633997331179 1 0.0445477962493896 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104066182 chr8:104066185 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_43514 0 0 1 0 2 Ribosome 1 0.500293119576491 1 0.999413760847019 hm5C_site_42497 DeepMRMD:1;iRNA_m5C:0.999413760847019 42498 chr9 91041432 91041432 1 + G A UCEC 91041433 + 91041413 91041453 41 ACCCTAGTCCAGCAGCTCCGCTGCTCACTTAAATACAGATG ACCCTAGTCCAGCAGCTCCACTGCTCACTTAAATACAGATG < 41bp 1 0.465499377763166 1 0.32180392742157 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 UTR5 Human protein_coding chr9:91041433 chr9:91041432 . . 0 20 hm5C_associated_SNPs_43515 0 0 1 0 1 Cytosol 1 0.500231707130348 1 0.999536585739304 hm5C_site_42498 DeepMRMD:1;iRNA_m5C:0.999536585739304 42499 chr6 31936155 31936155 1 + G A UCEC 31936137 + 31936117 31936157 41 CCTTGCAGCCGTGACCACTGCTGTCCAGGAACTGCTGCGTC CCTTGCAGCCGTGACCACTGCTGTCCAGGAACTGCTGCATC < 41bp 1 0.252611249716041 1 0.128022223711014 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31936137 chr6:31936155 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_43516 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42499 DeepMRMD:1;iRNA_m5C:0.999536712157815 42500 chr4 106861771 106861771 1 + G T UCEC 106861769 + 106861749 106861789 41 GCAAATGTAAAGAAGGATACCAGGGTGATGGACTGACTTGT GCAAATGTAAAGAAGGATACCATGGTGATGGACTGACTTGT < 41bp 1 0.462985812327996 1 0.323194235563278 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NPNT ENSG00000168743 CDS Human protein_coding chr4:106861769 chr4:106861771 nonsynonymous SNV 0.882 2 23 hm5C_associated_SNPs_43517 0 0 1 0 1 exosome 1 0.500231644139593 1 0.999536711720815 hm5C_site_42500 DeepMRMD:1;iRNA_m5C:0.999536711720815 42501 chr5 176519765 176519765 1 + C A UCEC 176519758 + 176519738 176519778 41 ATTCCATCGGCCTCTCCTACCAGTCTGCCTGGCTCACGGTG ATTCCATCGGCCTCTCCTACCAGTCTGACTGGCTCACGGTG < 41bp 1 0.300559221952072 1 0.426281869411469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519758 chr5:176519765 nonsynonymous SNV 0.975 4 28 hm5C_associated_SNPs_43518 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645376653 1 0.999536709246693 hm5C_site_42501 DeepMRMD:1;iRNA_m5C:0.999536709246693 42502 chr4 6596391 6596391 1 + G A UCEC 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACTTCCATGCCCTGCACGCTCTCAATGTCACCTGGCGTG < 41bp 1 0.128371854095402 1 0.0212816298007965 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596391 nonsynonymous SNV 0.133 0 9 hm5C_associated_SNPs_43519 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392118 1 0.99953671215764 hm5C_site_42502 DeepMRMD:1;iRNA_m5C:0.99953671215764 42503 chr17 73814820 73814820 1 + G A UCEC 73814827 + 73814807 73814847 41 CCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGC CCTAGCCCAGTGGACACCAGCAGCGTCCCCGGCATGAATGC < 41bp 1 0.665554905056656 1 0.472931206226349 experiment 0.668890189886689 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control UNK ENSG00000132478 CDS Human protein_coding chr17:73814827 chr17:73814820 nonsynonymous SNV 0.998 2 14 hm5C_associated_SNPs_43520 0 0 1 0 2 Cytosol 1 0.500231643921146 1 0.999536712157708 hm5C_site_42503 DeepMRMD:1;iRNA_m5C:0.999536712157708 42504 chr1 22333459 22333459 1 + C A UCEC 22333440 + 22333420 22333460 41 GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCT GCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCAT < 41bp 1 0.113444355702658 1 0.138887465000153 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333440 chr1:22333459 nonsynonymous SNV 0.603 4 40 hm5C_associated_SNPs_43521 0 0 0 0 2 Endoplasmic reticulum 1 0.500231503206212 1 0.999536993587575 hm5C_site_42504 DeepMRMD:1;iRNA_m5C:0.999536993587575 42505 chr1 22333459 22333459 1 + C A UCEC 22333441 + 22333421 22333461 41 CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTT CCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATT < 41bp 1 0.0416604932832593 1 0.0398607552051544 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333441 chr1:22333459 nonsynonymous SNV 0.603 4 39 hm5C_associated_SNPs_43522 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920944 1 0.999536712158113 hm5C_site_42505 DeepMRMD:1;iRNA_m5C:0.999536712158113 42506 chr1 22333459 22333459 1 + C A UCEC 22333442 + 22333422 22333462 41 CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTC CGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATTC < 41bp 1 0.404762002259836 1 0.276446998119354 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333442 chr1:22333459 nonsynonymous SNV 0.603 4 38 hm5C_associated_SNPs_43523 0 0 0 0 2 Endoplasmic reticulum 1 0.500231727372145 1 0.999536545255711 hm5C_site_42506 DeepMRMD:1;iRNA_m5C:0.999536545255711 42507 chr1 22333459 22333459 1 + C A UCEC 22333444 + 22333424 22333464 41 TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCC TCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATTCCC < 41bp 1 0.301237973576534 1 0.242042005062103 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333444 chr1:22333459 nonsynonymous SNV 0.603 4 36 hm5C_associated_SNPs_43524 0 0 0 0 2 Endoplasmic reticulum 1 0.50023266631148 1 0.999534667377039 hm5C_site_42507 DeepMRMD:1;iRNA_m5C:0.999534667377039 42508 chr1 22333459 22333459 1 + C A UCEC 22333445 + 22333425 22333465 41 CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCA CCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATTCCCA < 41bp 1 0.268783527929949 1 0.263598799705505 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333445 chr1:22333459 nonsynonymous SNV 0.603 4 35 hm5C_associated_SNPs_43525 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643923451 1 0.999536712153097 hm5C_site_42508 DeepMRMD:1;iRNA_m5C:0.999536712153097 42509 chr1 22333459 22333459 1 + C A UCEC 22333446 + 22333426 22333466 41 CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAA CAGCTCGCCTCACTCCCTCCCGCTGGTGACATCATTCCCAA < 41bp 1 0.606835143259522 1 0.780604243278503 experiment 0.786329713480955 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333446 chr1:22333459 nonsynonymous SNV 0.603 4 34 hm5C_associated_SNPs_43526 0 0 0 0 2 Endoplasmic reticulum 1 0.500231614873299 0.438791513442994 0.999536770253401 hm5C_site_42509 DeepMRMD:0.438791513442994;iRNA_m5C:0.999536770253401 42510 chr11 58379208 58379208 1 + G T UCEC 58379204 + 58379184 58379224 41 TTAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCAAT TTAGAGAGGATGAGGAACCTCCAATGAAGTGAGTAGGCAAT < 41bp 1 0.125105631046765 1 0.250145226716995 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379204 chr11:58379208 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_43528 0 0 1 0 1 chromatin 1 0.500725491495291 1 0.998549017009418 hm5C_site_42510 DeepMRMD:1;iRNA_m5C:0.998549017009418 42511 chr11 58379208 58379208 1 + G T UCEC 58379205 + 58379185 58379225 41 TAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCAATT TAGAGAGGATGAGGAACCTCCAATGAAGTGAGTAGGCAATT < 41bp 1 0.221269211921366 1 0.108939409255981 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379205 chr11:58379208 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_43529 0 0 1 0 1 chromatin 1 0.50023963021217 1 0.999520739575659 hm5C_site_42511 DeepMRMD:1;iRNA_m5C:0.999520739575659 42512 chr12 112940012 112940012 1 + G A UCEC 112940029 + 112940009 112940049 41 GTGGAGATCAGAGCCCTCTCCCGCCTTGTACTCCAACGCCA GTGAAGATCAGAGCCCTCTCCCGCCTTGTACTCCAACGCCA < 41bp 1 0.325557920314804 1 0.127474308013916 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112940029 chr12:112940012 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_43530 0 0 1 0 1 Ribosome 1 0.500233276837689 1 0.999533446324621 hm5C_site_42512 DeepMRMD:1;iRNA_m5C:0.999533446324621 42513 chr18 13095639 13095639 1 + C T UCEC 13095653 + 13095633 13095673 41 CGTGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT CGTGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCT < 41bp 1 0.170361069142159 1 0.0963205695152283 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095653 chr18:13095639 nonsynonymous SNV 0.003 1 7 hm5C_associated_SNPs_43532 0 0 1 11 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42513 DeepMRMD:1;iRNA_m5C:0.999536712157815 42514 chr18 13095639 13095639 1 + C T UCEC 13095655 + 13095635 13095675 41 TGGACTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC TGGATTGTCCTACCCGAGCACTTGATTCTGGTAGCTCCTTC < 41bp 1 0.579630832732494 1 0.149724245071411 experiment 0.840738334535013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095655 chr18:13095639 nonsynonymous SNV 0.003 1 5 hm5C_associated_SNPs_43533 0 0 1 11 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42514 DeepMRMD:1;iRNA_m5C:0.999536712157815 42515 chr2 27449450 27449450 1 + G A UCEC 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTGGCCAGTAAGACCACAGGTTATCCACTGGCTT < 41bp 1 0.192570528100393 1 0.0935760736465454 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449450 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_43535 0 0 1 0 2 Exosome 1 0.500191010260745 1 0.99961797947851 hm5C_site_42515 DeepMRMD:1;iRNA_m5C:0.99961797947851 42516 chr1 161130777 161130777 1 + G A UCEC 161130757 + 161130737 161130777 41 CCATCTCGGACCAACTTAGCCCGTTCCAAGTCTGTGAGCAG CCATCTCGGACCAACTTAGCCCGTTCCAAGTCTGTGAGCAA < 41bp 1 0.0914863849566761 1 0.112721085548401 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161130757 chr1:161130777 nonsynonymous SNV 1.000 1 41 hm5C_associated_SNPs_43536 0 0 1 0 0 Cytosol 1 0.500231643922417 1 0.999536712155166 hm5C_site_42516 DeepMRMD:1;iRNA_m5C:0.999536712155166 42517 chr1 161130777 161130777 1 + G A UCEC 161130758 + 161130738 161130778 41 CATCTCGGACCAACTTAGCCCGTTCCAAGTCTGTGAGCAGT CATCTCGGACCAACTTAGCCCGTTCCAAGTCTGTGAGCAAT < 41bp 1 0.0295169428093078 1 0.0496025383472443 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161130758 chr1:161130777 nonsynonymous SNV 1.000 1 40 hm5C_associated_SNPs_43537 0 0 1 0 0 Cytosol 1 0.500257989700901 1 0.999484020598198 hm5C_site_42517 DeepMRMD:1;iRNA_m5C:0.999484020598198 42518 chr1 161130777 161130777 1 + G A UCEC 161130762 + 161130742 161130782 41 TCGGACCAACTTAGCCCGTTCCAAGTCTGTGAGCAGTGGGG TCGGACCAACTTAGCCCGTTCCAAGTCTGTGAGCAATGGGG < 41bp 1 0.110533051535282 1 0.202012062072754 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161130762 chr1:161130777 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_43538 0 0 1 0 0 Cytosol 1 0.500231643911928 1 0.999536712176144 hm5C_site_42518 DeepMRMD:1;iRNA_m5C:0.999536712176144 42519 chr20 3564713 3564713 1 + C T UCEC 3564722 + 3564702 3564742 41 GGAATGGTATACGATGAGCACCTGCCCCCGTAAGTGAAAAA GGAATGGTATATGATGAGCACCTGCCCCCGTAAGTGAAAAA < 41bp 1 0.0266951390413254 1 0.135832250118256 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3564722 chr20:3564713 nonsynonymous SNV 0.973 4 12 hm5C_associated_SNPs_43539 0 0 1 0 1 Ribosome 1 0.500231643922238 1 0.999536712155524 hm5C_site_42519 DeepMRMD:1;iRNA_m5C:0.999536712155524 42520 chr18 77102315 77102315 1 + C T UCEC 77102335 + 77102315 77102355 41 CAAAAGTTCACATCTCGTGTCTAGAACACAAGATATTCATA TAAAAGTTCACATCTCGTGTCTAGAACACAAGATATTCATA < 41bp 1 0.329292454351897 1 0.43024605512619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP9B ENSG00000166377 CDS Human protein_coding chr18:77102335 chr18:77102315 synonymous SNV . 0 1 hm5C_associated_SNPs_43540 0 0 0 0 2 Endoplasmic reticulum 1 0.500231667329921 1 0.999536665340158 hm5C_site_42520 DeepMRMD:1;iRNA_m5C:0.999536665340158 42521 chr14 65194485 65194485 1 + G A UCEC 65194465 + 65194445 65194485 41 TCGCAGTGCCATGGAGGAGCCCAGCAGCTCCGAGGCTCCCG TCGCAGTGCCATGGAGGAGCCCAGCAGCTCCGAGGCTCCCA < 41bp 1 0.135531583203311 1 0.393742918968201 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65194465 chr14:65194485 nonsynonymous SNV 0.000 0 41 hm5C_associated_SNPs_43541 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42521 DeepMRMD:1;iRNA_m5C:0.999536712157815 42522 chr14 65194485 65194485 1 + G A UCEC 65194466 + 65194446 65194486 41 CGCAGTGCCATGGAGGAGCCCAGCAGCTCCGAGGCTCCCGC CGCAGTGCCATGGAGGAGCCCAGCAGCTCCGAGGCTCCCAC < 41bp 1 0.678352054052949 1 0.499298602342606 experiment 0.643295891894103 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65194466 chr14:65194485 nonsynonymous SNV 0.000 0 40 hm5C_associated_SNPs_43542 0 0 0 0 0 Nucleus 1 0.50023161648485 1 0.9995367670303 hm5C_site_42522 DeepMRMD:1;iRNA_m5C:0.9995367670303 42523 chr10 129231623 129231623 1 + G T UCEC 129231605 + 129231585 129231625 41 GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCC GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCTCC < 41bp 1 0.577101003719493 1 0.783625185489655 experiment 0.845797992561015 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129231605 chr10:129231623 nonsynonymous SNV 0.883 4 39 hm5C_associated_SNPs_43543 0 0 0 0 2 Nucleus 1 0.500231643921093 0.43274962902069 0.999536712157815 hm5C_site_42523 DeepMRMD:0.43274962902069;iRNA_m5C:0.999536712157815 42524 chrX 70354254 70354254 1 + G A UCEC 70354269 + 70354249 70354289 41 ACCACGGAGTGGGCCATGCTCCTCCTGGAGATCATCATCAG ACCACAGAGTGGGCCATGCTCCTCCTGGAGATCATCATCAG < 41bp 1 0.146424556339184 1 0.426467627286911 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70354269 chrX:70354254 synonymous SNV . 0 6 hm5C_associated_SNPs_43544 1 0 0 0 2 Cytosol 1 0.500231837662573 1 0.999536324674854 hm5C_site_42524 DeepMRMD:1;iRNA_m5C:0.999536324674854 not specified not specified 42525 chr11 62502875 62502875 1 + C A UCEC 62502861 + 62502841 62502881 41 TTTGGCCCATTAGCTTGTCTCCTTCAGATGGAGCCCGTGAA TTTGGCCCATTAGCTTGTCTCCTTCAGATGGAGCACGTGAA < 41bp 1 0.0268915050280996 1 0.0603937208652496 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TTC9C ENSG00000162222 CDS Human protein_coding chr11:62502861 chr11:62502875 nonsynonymous SNV 0.996 0 35 hm5C_associated_SNPs_43545 0 0 1 0 1 Ribosome 1 0.500231643921267 1 0.999536712157466 hm5C_site_42525 DeepMRMD:1;iRNA_m5C:0.999536712157466 42526 chr21 45217977 45217977 1 + C T UCEC 45217964 + 45217944 45217984 41 CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCCGCAGGTG CGCGCTGTCCCAGAAGAGGTCTGAGAAGCCGCCTGCAGGTG < 41bp 1 0.692935104611386 1 0.173383921384811 experiment 0.614129790777229 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217964 chr21:45217977 synonymous SNV . 0 34 hm5C_associated_SNPs_43546 0 0 1 0 1 Ribosome 1 0.500231644293121 1 0.999536711413757 hm5C_site_42526 DeepMRMD:1;iRNA_m5C:0.999536711413757 42527 chr19 11152175 11152175 1 + C T UCEC 11152165 + 11152145 11152185 41 CGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCT CGGCCGCCTGCCGAGAAACTCTCCCCTAACTCACCCAACCT < 41bp 1 0.32539512070843 1 0.326309084892273 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11152165 chr19:11152175 nonsynonymous SNV 0.928 3 31 hm5C_associated_SNPs_43547 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_42527 DeepMRMD:1;iRNA_m5C:0.999536712157815 42528 chr19 11152175 11152175 1 + C T UCEC 11152168 + 11152148 11152188 41 CCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCTCAC CCGCCTGCCGAGAAACTCTCCCCTAACTCACCCAACCTCAC < 41bp 1 0.157498626101967 1 0.142834037542343 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11152168 chr19:11152175 nonsynonymous SNV 0.928 3 28 hm5C_associated_SNPs_43548 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_42528 DeepMRMD:1;iRNA_m5C:0.999536712157814 42529 chr19 14580190 14580190 1 + A G UCEC 14580202 + 14580182 14580222 41 CAGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTC CAGTGACCGGTGCGGGACACCCCTTCCTGGTGAACCTCTTC < 41bp 1 0.0638307844329068 1 0.109463095664978 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580202 chr19:14580190 nonsynonymous SNV 0.117 0 9 hm5C_associated_SNPs_43550 0 0 1 0 1 Ribosome 1 0.500238340506147 1 0.999523318987706 hm5C_site_42529 DeepMRMD:1;iRNA_m5C:0.999523318987706 42530 chr19 14580190 14580190 1 + A G UCEC 14580203 + 14580183 14580223 41 AGTGACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG AGTGACCGGTGCGGGACACCCCTTCCTGGTGAACCTCTTCG < 41bp 1 0.0238416377249172 1 0.15375617146492 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580203 chr19:14580190 nonsynonymous SNV 0.117 0 8 hm5C_associated_SNPs_43551 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42530 DeepMRMD:1;iRNA_m5C:0.999536712157815 42531 chr19 14580190 14580190 1 + A G UCEC 14580207 + 14580187 14580227 41 ACCAGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG ACCGGTGCGGGACACCCCTTCCTGGTGAACCTCTTCGGCTG < 41bp 1 0.473543095213138 1 0.613941669464111 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14580207 chr19:14580190 nonsynonymous SNV 0.117 0 4 hm5C_associated_SNPs_43552 0 0 1 0 1 Ribosome 1 0.500231643921092 0.772116661071778 0.999536712157815 hm5C_site_42531 DeepMRMD:0.772116661071778;iRNA_m5C:0.999536712157815 Stroke 42532 chr10 93751971 93751971 1 + A G UCEC 93751990 + 93751970 93752010 41 CACAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTC CGCAAGTAGGCGAGGTCCTACCCCCAAAGCAGTAAAAGCTC < 41bp 1 0.182450115833101 1 0.0966578125953674 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93751990 chr10:93751971 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_43553 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_42532 DeepMRMD:1;iRNA_m5C:0.999536712157815 42533 chr2 86360531 86360531 1 + G A UCEC 86360529 + 86360509 86360549 41 AAGCATTGGATGTGGCCAATCGGCTAGAAGTGATTCCTAAA AAGCATTGGATGTGGCCAATCGACTAGAAGTGATTCCTAAA < 41bp 1 0.430285864450765 1 0.666226863861084 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360529 chr2:86360531 synonymous SNV . 0 23 hm5C_associated_SNPs_43555 0 0 1 0 2 Nucleus 1 0.500231643925627 0.667546272277832 0.999536712148746 hm5C_site_42533 DeepMRMD:0.667546272277832;iRNA_m5C:0.999536712148746 42534 chr7 794299 794299 1 + C T UCEC 794297 + 794277 794317 41 AGATCCTCCCTGCCCTGTGCCACGACATCACCGACTGGGTG AGATCCTCCCTGCCCTGTGCCATGACATCACCGACTGGGTG < 41bp 1 0.436712221727731 1 0.0710168182849884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:794297 chr7:794299 synonymous SNV . 0 23 hm5C_associated_SNPs_43556 0 0 1 0 1 Ribosome 1 0.500231643918496 1 0.999536712163009 hm5C_site_42534 DeepMRMD:1;iRNA_m5C:0.999536712163009 42535 chr18 20815980 20815980 1 + G A UCEC 20815963 + 20815943 20815983 41 CAGTTCCGTAACCTGAGCCACCGCAGCCTCTCCATAGGCCG CAGTTCCGTAACCTGAGCCACCGCAGCCTCTCCATAGACCG < 41bp 1 0.284048744085178 1 0.20206093788147 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CABLES1 ENSG00000134508 CDS Human protein_coding chr18:20815963 chr18:20815980 nonsynonymous SNV 0.815 3 38 hm5C_associated_SNPs_43557 0 0 0 0 1 chromatin 1 0.500230906654132 1 0.999538186691736 hm5C_site_42535 DeepMRMD:1;iRNA_m5C:0.999538186691736 42536 chr1 109806263 109806263 1 + G A UCEC 109806280 + 109806260 109806300 41 GCAGCAGCCTGGTGGCCTGGCATGGCCTCTCGCTGCCCATC GCAACAGCCTGGTGGCCTGGCATGGCCTCTCGCTGCCCATC < 41bp 1 0.266013247812733 1 0.169173687696457 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806280 chr1:109806263 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_43558 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164392129 1 0.999536712157419 hm5C_site_42536 DeepMRMD:1;iRNA_m5C:0.999536712157419 42537 chr11 35684851 35684851 1 + C A UCEC 35684862 + 35684842 35684882 41 CCACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGG CCACGGCTCACAGGCCTGGACCCCGCCAGCTGACGGAGAGG < 41bp 1 0.371964285554392 1 0.190104812383652 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684862 chr11:35684851 synonymous SNV . 0 10 hm5C_associated_SNPs_43559 0 0 1 0 0 Ribosome 1 0.500231643938797 1 0.999536712122407 hm5C_site_42537 DeepMRMD:1;iRNA_m5C:0.999536712122407 42538 chr11 35684851 35684851 1 + C A UCEC 35684863 + 35684843 35684883 41 CACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGGG CACGGCTCACAGGCCTGGACCCCGCCAGCTGACGGAGAGGG < 41bp 1 0.21034434894475 1 0.22091281414032 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684863 chr11:35684851 synonymous SNV . 0 9 hm5C_associated_SNPs_43560 0 0 1 0 0 Ribosome 1 0.500231675442842 1 0.999536649114317 hm5C_site_42538 DeepMRMD:1;iRNA_m5C:0.999536649114317 42539 chr11 35684851 35684851 1 + C A UCEC 35684864 + 35684844 35684884 41 ACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGGAGAGGGG ACGGCTCACAGGCCTGGACCCCGCCAGCTGACGGAGAGGGG < 41bp 1 0.274684120182869 1 0.346649050712585 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684864 chr11:35684851 synonymous SNV . 0 8 hm5C_associated_SNPs_43561 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42539 DeepMRMD:1;iRNA_m5C:0.999536712157815 42540 chr5 112868681 112868681 1 + G A UCEC 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTGTGGCTGAAAGAGTTACCGCAGAGAGACGGGAAAGGA < 41bp 1 0.579148968645285 1 0.102562010288239 experiment 0.841702062709431 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868681 nonsynonymous SNV 0.999 4 20 hm5C_associated_SNPs_43562 0 0 1 0 1 Cytosol 1 0.500231643739465 1 0.99953671252107 hm5C_site_42540 DeepMRMD:1;iRNA_m5C:0.99953671252107 42541 chr5 112868681 112868681 1 + G A UCEC 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTGTGGCTGAAAGAGTTACCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.686558621186589 1 0.764957785606384 experiment 0.626882757626822 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868681 nonsynonymous SNV 0.999 4 19 hm5C_associated_SNPs_43563 0 0 1 0 1 Cytosol 1 0.500231644266181 0.470084428787232 0.999536711467638 hm5C_site_42541 DeepMRMD:0.470084428787232;iRNA_m5C:0.999536711467638 42542 chr19 24010147 24010147 1 + G A UCEC 24010154 + 24010134 24010174 41 GCTTCTGCTGGCAGCTCGTGCTATTGTTGCCATTGAAAACC GCTTCTGCTGGCAACTCGTGCTATTGTTGCCATTGAAAACC < 41bp 1 0.185297991263273 1 0.0886645913124084 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPSAP58 ENSG00000205246 CDS Human other chr19:24010154 chr19:24010147 nonsynonymous SNV 0.893 1 14 hm5C_associated_SNPs_43564 0 0 0 0 0 Cytosol 1 0.500231644047756 1 0.999536711904488 hm5C_site_42542 DeepMRMD:1;iRNA_m5C:0.999536711904488 42543 chr10 63850880 63850880 1 + C G UCEC 63850899 + 63850879 63850919 41 TCAGCCTTGGTCCCTGGGGCCAGCAAACAGCCACTCACCTC TGAGCCTTGGTCCCTGGGGCCAGCAAACAGCCACTCACCTC < 41bp 1 0.671337448771341 1 0.138462990522385 experiment 0.657325102457317 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARID5B ENSG00000150347 CDS Human protein_coding chr10:63850899 chr10:63850880 stopgain 0.003 0 2 hm5C_associated_SNPs_43566 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_42543 DeepMRMD:1;iRNA_m5C:0.999536712157816 42544 chr17 48434076 48434076 1 + C T UCEC 48434072 + 48434052 48434092 41 CTCACTGCTTACACAGCCTTCGCCCGCCTCAGCCTGCACCA CTCACTGCTTACACAGCCTTCGCCTGCCTCAGCCTGCACCA < 41bp 1 0.516027979510062 1 0.154038548469543 experiment 0.967944040979876 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48434072 chr17:48434076 nonsynonymous SNV 0.878 4 25 hm5C_associated_SNPs_43567 0 0 0 0 1 nucleolus 1 0.50023195738557 1 0.999536085228859 hm5C_site_42544 DeepMRMD:1;iRNA_m5C:0.999536085228859 42545 chr18 33780019 33780019 1 + C T UCEC 33780021 + 33780001 33780041 41 GTCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAA GTCAAGTCTGGGCGGTTGTACCCTGTGAGCACGCCTGGGAA < 41bp 1 0.40942685890586 1 0.0617339313030243 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780021 chr18:33780019 nonsynonymous SNV 0.000 1 19 hm5C_associated_SNPs_43568 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_42545 DeepMRMD:1;iRNA_m5C:0.999536712157816 42546 chr18 33780019 33780019 1 + C T UCEC 33780022 + 33780002 33780042 41 TCAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAAG TCAAGTCTGGGCGGTTGTACCCTGTGAGCACGCCTGGGAAG < 41bp 1 0.535803819103687 1 0.300858616828918 experiment 0.928392361792625 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780022 chr18:33780019 nonsynonymous SNV 0.000 1 18 hm5C_associated_SNPs_43569 0 0 1 0 0 Ribosome 1 0.500231643921087 1 0.999536712157826 hm5C_site_42546 DeepMRMD:1;iRNA_m5C:0.999536712157826 42547 chr18 33780019 33780019 1 + C T UCEC 33780023 + 33780003 33780043 41 CAAGTCTGGGCGGTTGCACCCTGTGAGCACGCCTGGGAAGT CAAGTCTGGGCGGTTGTACCCTGTGAGCACGCCTGGGAAGT < 41bp 1 0.656125906684829 1 0.0503070950508118 experiment 0.687748186630343 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33780023 chr18:33780019 nonsynonymous SNV 0.000 1 17 hm5C_associated_SNPs_43570 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_42547 DeepMRMD:1;iRNA_m5C:0.999536712157816 42548 chr18 13059290 13059290 1 + T C UCEC 13059272 + 13059252 13059292 41 GCAGAAGCTTTGGCCAGCACCGTCACTCTCACTGCCATTGC GCAGAAGCTTTGGCCAGCACCGTCACTCTCACTGCCATCGC < 41bp 1 0.57445833422408 1 0.32967472076416 experiment 0.851083331551841 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13059272 chr18:13059290 synonymous SNV . 0 39 hm5C_associated_SNPs_43571 0 0 1 0 0 Nucleus 1 0.500243543148834 1 0.999512913702332 hm5C_site_42548 DeepMRMD:1;iRNA_m5C:0.999512913702332 42549 chr2 32640606 32640606 1 + G A UCEC 32640607 + 32640587 32640627 41 TTCATTTGTTGGTAGGACTGCGGACATGCCCTGTTGAATCC TTCATTTGTTGGTAGGACTACGGACATGCCCTGTTGAATCC < 41bp 1 0.12714984607745 1 0.500162482261658 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32640607 chr2:32640606 synonymous SNV . 0 20 hm5C_associated_SNPs_43572 0 0 1 0 0 Nucleus 1 0.500231643921092 0.999675035476684 0.999536712157815 hm5C_site_42549 DeepMRMD:0.999675035476684;iRNA_m5C:0.999536712157815 42550 chr10 75871837 75871837 1 + C A UCEC 75871841 + 75871821 75871861 41 TGGCCGCGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG TGGCCGCGGCTCAGTCATTGCATCGGGAAGCTACCAAGTGG < 41bp 1 0.388135893517515 1 0.228924602270126 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871841 chr10:75871837 synonymous SNV . 0 17 hm5C_associated_SNPs_43574 0 0 0 0 1 Nucleus 1 0.500230502908812 1 0.999538994182375 hm5C_site_42550 DeepMRMD:1;iRNA_m5C:0.999538994182375 42551 chr9 80915557 80915557 1 + G T UCEC 80915575 + 80915555 80915595 41 AAGGAGTTGGCATTAGTGTTCTTGGTAAGATTTACTTTTGA AATGAGTTGGCATTAGTGTTCTTGGTAAGATTTACTTTTGA < 41bp 1 0.457170976779826 1 0.481495320796967 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80915575 chr9:80915557 stopgain 0.991 1 3 hm5C_associated_SNPs_43575 0 0 1 0 2 Ribosome 1 0.500231643921096 1 0.999536712157809 hm5C_site_42551 DeepMRMD:1;iRNA_m5C:0.999536712157809 42552 chr10 99416059 99416059 1 + T C UCEC 99416064 + 99416044 99416084 41 AGTATACCTGGCCAGTGAGACCTTCAACTATAGTGCCATTG AGTATACCTGGCCAGCGAGACCTTCAACTATAGTGCCATTG < 41bp 1 0.0121348368773017 1 0.0401354730129242 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PI4K2A ENSG00000155252;ENSG00000249967 CDS Human other chr10:99416064 chr10:99416059 synonymous SNV . 0 16 hm5C_associated_SNPs_43576 0 0 0 0 1 Ribosome 1 0.500231643921387 1 0.999536712157226 hm5C_site_42552 DeepMRMD:1;iRNA_m5C:0.999536712157226 42553 chr1 161088974 161088974 1 + C A UCEC 161088961 + 161088941 161088981 41 TCTCCTCTTCCTCCTGCGAACTGCCCCTGGTGGCTGTGTGC TCTCCTCTTCCTCCTGCGAACTGCCCCTGGTGGATGTGTGC < 41bp 1 0.310500881953744 1 0.0882014334201813 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NIT1 ENSG00000158793 CDS Human protein_coding chr1:161088961 chr1:161088974 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_43577 0 0 1 0 1 nucleolus 1 0.500231583261693 1 0.999536833476613 hm5C_site_42553 DeepMRMD:1;iRNA_m5C:0.999536833476613 42554 chr2 207024653 207024653 1 + T A UCEC 207024663 + 207024643 207024683 41 GCGCCCACAATTTGCGCGCTCTCTTTCTGCTGCTCCCCAGC GCGCCCACAAATTGCGCGCTCTCTTTCTGCTGCTCCCCAGC < 41bp 1 0.393951703376626 1 0.0214557647705078 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 UTR5 Human protein_coding chr2:207024663 chr2:207024653 . . 0 11 hm5C_associated_SNPs_43579 0 0 1 0 1 chromatin 1 0.500231660733254 1 0.999536678533493 hm5C_site_42554 DeepMRMD:1;iRNA_m5C:0.999536678533493 42555 chr6 44219831 44219831 1 + T G UCEC 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGGACT < 41bp 1 0.368283746877046 1 0.217917144298553 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219831 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_43580 0 0 1 0 1 Nucleus 1 0.500020991690201 1 0.999958016619597 hm5C_site_42555 DeepMRMD:1;iRNA_m5C:0.999958016619597 42556 chr6 44219831 44219831 1 + T G UCEC 44219833 + 44219813 44219853 41 ACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGA ACCGAGCCCATTGACGAGGACTGTGTGCAGCAGCTCAAGGA < 41bp 1 0.490591455860796 1 0.0422308444976807 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219833 chr6:44219831 nonsynonymous SNV 0.997 3 19 hm5C_associated_SNPs_43581 0 0 1 0 1 Nucleus 1 0.500231642996372 1 0.999536714007256 hm5C_site_42556 DeepMRMD:1;iRNA_m5C:0.999536714007256 42557 chr1 153750651 153750651 1 + T C UCEC 153750644 + 153750624 153750664 41 CCACTCATCTCAGAGCAAGGCAGAACGTGGCCATAAGGTCC CCACTCATCTCAGAGCAAGGCAGAACGCGGCCATAAGGTCC < 41bp 1 0.60255244984975 1 0.350177705287933 experiment 0.7948951003005 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750644 chr1:153750651 synonymous SNV . 0 28 hm5C_associated_SNPs_43584 0 0 0 0 1 nucleoplasm 1 0.500228410855307 1 0.999543178289387 hm5C_site_42557 DeepMRMD:1;iRNA_m5C:0.999543178289387 42558 chr1 153750651 153750651 1 + T C UCEC 153750655 + 153750635 153750675 41 AGAGCAAGGCAGAACGTGGCCATAAGGTCCGGCTGGCAGTG AGAGCAAGGCAGAACGCGGCCATAAGGTCCGGCTGGCAGTG < 41bp 1 0.486883352567477 1 0.126791030168533 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750655 chr1:153750651 synonymous SNV . 0 17 hm5C_associated_SNPs_43585 0 0 0 0 1 nucleoplasm 1 0.500231644000991 1 0.999536711998019 hm5C_site_42558 DeepMRMD:1;iRNA_m5C:0.999536711998019 42559 chr1 153750651 153750651 1 + T C UCEC 153750663 + 153750643 153750683 41 GCAGAACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG GCAGAACGCGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGG < 41bp 1 0.488679726484248 1 0.418095231056213 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750663 chr1:153750651 synonymous SNV . 0 9 hm5C_associated_SNPs_43586 0 0 0 0 1 nucleoplasm 1 0.500231644487106 1 0.999536711025787 hm5C_site_42559 DeepMRMD:1;iRNA_m5C:0.999536711025787 42560 chr1 153750651 153750651 1 + T C UCEC 153750667 + 153750647 153750687 41 AACGTGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG AACGCGGCCATAAGGTCCGGCTGGCAGTGGGCAGCGGGCTG < 41bp 1 0.401820021531387 1 0.125857204198837 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750667 chr1:153750651 synonymous SNV . 0 5 hm5C_associated_SNPs_43587 0 0 0 0 1 nucleoplasm 1 0.500231643921447 1 0.999536712157107 hm5C_site_42560 DeepMRMD:1;iRNA_m5C:0.999536712157107 42561 chr7 100867239 100867239 1 + A C UCEC 100867232 + 100867212 100867252 41 CTGCAGGTGTCTGAAGTGGACTGTGTGAGCCTGGGCATTCC CTGCAGGTGTCTGAAGTGGACTGTGTGCGCCTGGGCATTCC < 41bp 1 0.699743593156315 1 0.0630992949008942 experiment 0.600512813687371 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867232 chr7:100867239 stoploss 0.602 0 28 hm5C_associated_SNPs_43588 0 0 1 0 1 Cytosol 1 0.500231643644876 1 0.999536712710248 hm5C_site_42561 DeepMRMD:1;iRNA_m5C:0.999536712710248 42562 chr10 104679414 104679414 1 + G T UCEC 104679423 + 104679403 104679443 41 CTTCCTACCCGGTCAGCAAGCTGCTGGACTGCGTCCTGGGC CTTCCTACCCGTTCAGCAAGCTGCTGGACTGCGTCCTGGGC < 41bp 1 0.419586620994717 1 0.164173662662506 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104679423 chr10:104679414 nonsynonymous SNV 1.000 5 12 hm5C_associated_SNPs_43590 0 0 1 0 0 Ribosome 1 0.500194426661347 1 0.999611146677305 hm5C_site_42562 DeepMRMD:1;iRNA_m5C:0.999611146677305 42563 chr5 1034382 1034382 1 + C G UCEC 1034388 + 1034368 1034408 41 TCGGTGGAGGAGGACGACCGCCAGGAGTGGACGTTCACGCT TCGGTGGAGGAGGAGGACCGCCAGGAGTGGACGTTCACGCT < 41bp 1 0.37392880213138 1 0.592290222644806 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NKD2 ENSG00000145506 CDS Human protein_coding chr5:1034388 chr5:1034382 nonsynonymous SNV 0.001 1 15 hm5C_associated_SNPs_43591 0 0 0 0 2 exosome 1 0.500231643921089 0.815419554710388 0.999536712157823 hm5C_site_42563 DeepMRMD:0.815419554710388;iRNA_m5C:0.999536712157823 42564 chr20 44522629 44522629 1 + T C UCEC 44522643 + 44522623 44522663 41 ACAGGCTTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA ACAGGCCTTGGTCTTCTCTCCAGACCCACTGCTGCTCTCAA < 41bp 1 0.1598584421295 1 0.932987987995148 experiment 1 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44522643 chr20:44522629 nonsynonymous SNV 0.939 5 7 hm5C_associated_SNPs_43592 0 0 1 1 2 Ribosome 1 0.5002316045757 0.134024024009704 0.999536790848601 hm5C_site_42564 DeepMRMD:0.134024024009704;iRNA_m5C:0.999536790848601 42565 chr18 54362334 54362334 1 + T A UCEC 54362330 + 54362310 54362350 41 TGTACATACCAGCACATGGACGACTTGTTTGTGGTCGTGAA TGTACATACCAGCACATGGACGACATGTTTGTGGTCGTGAA < 41bp 1 0.485232930513264 1 0.133305191993713 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR7 ENSG00000091157 CDS Human protein_coding chr18:54362330 chr18:54362334 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_43593 0 0 0 0 1 chromatin 1 0.500231643920847 1 0.999536712158307 hm5C_site_42565 DeepMRMD:1;iRNA_m5C:0.999536712158307 42566 chr11 309112 309112 1 + A G UCEC 309126 + 309106 309146 41 ATCTTCATGACCATTCTGCTCATCATCATCCCAGTGTTGGT ATCTTCGTGACCATTCTGCTCATCATCATCCCAGTGTTGGT < 41bp 1 0.419040884249255 1 0.0389183163642883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFITM2 ENSG00000185201 CDS Human protein_coding chr11:309126 chr11:309112 nonsynonymous SNV 0.000 1 7 hm5C_associated_SNPs_43594 0 0 1 0 1 Endoplasmic reticulum 1 0.500231653943111 1 0.999536692113779 hm5C_site_42566 DeepMRMD:1;iRNA_m5C:0.999536692113779 42567 chr19 50753079 50753079 1 + C T UCEC 50753062 + 50753042 50753082 41 CTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCCGGT CTCGACCTGCAGCCCTGCATCGACCTCATCGAGCGGCTGGT < 41bp 1 0.203581630011409 1 0.512857735157013 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753062 chr19:50753079 nonsynonymous SNV 0.986 3 38 hm5C_associated_SNPs_43595 1 0 0 0 1 cytosol 1 0.500231644137726 0.974284529685974 0.999536711724548 hm5C_site_42567 DeepMRMD:0.974284529685974;iRNA_m5C:0.999536711724548 not specified not specified 42568 chr7 5644995 5644995 1 + T G UCEC 5644976 + 5644956 5644996 41 GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACTA GGCGACACTCCTGTGGACTTCTTCTTCGAGTTCTGCGACGA < 41bp 1 0.236073767750329 1 0.234697699546814 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644976 chr7:5644995 nonsynonymous SNV 0.999 1 40 hm5C_associated_SNPs_43596 0 0 1 0 1 Ribosome 1 0.500231643577039 1 0.999536712845922 hm5C_site_42568 DeepMRMD:1;iRNA_m5C:0.999536712845922 42569 chr18 74622083 74622083 1 + A G UCEC 74622068 + 74622048 74622088 41 CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGGGCCCT < 41bp 1 0.334839351333108 1 0.371924072504044 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622068 chr18:74622083 nonsynonymous SNV 0.020 0 36 hm5C_associated_SNPs_43597 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42569 DeepMRMD:1;iRNA_m5C:0.999536712157815 42570 chr14 21544577 21544577 1 + C T UCEC 21544565 + 21544545 21544585 41 CCGTCCTGCTGGACCTTCGTCAGGCACCTCCACTGCCTCCA CCGTCCTGCTGGACCTTCGTCAGGCACCTCCATTGCCTCCA < 41bp 1 0.668789777070558 1 0.887920558452606 experiment 0.662420445858883 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21544565 chr14:21544577 synonymous SNV . 0 33 hm5C_associated_SNPs_43598 0 0 1 0 2 Cytosol 1 0.500231613766484 0.224158883094788 0.999536772467033 hm5C_site_42570 DeepMRMD:0.224158883094788;iRNA_m5C:0.999536772467033 42571 chr1 155028674 155028674 1 + G A UCEC 155028667 + 155028647 155028687 41 TCACCCTCGAAAACTTCCTCCACTGGCGCAGGGCACATTTG TCACCCTCGAAAACTTCCTCCACTGGCACAGGGCACATTTG < 41bp 1 0.390774405065076 1 0.195888191461563 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155028667 chr1:155028674 nonsynonymous SNV 0.886 4 28 hm5C_associated_SNPs_43599 0 0 0 2 0 Ribosome 1 0.500231643921088 1 0.999536712157823 hm5C_site_42571 DeepMRMD:1;iRNA_m5C:0.999536712157823 42572 chr1 27099098 27099098 1 + C T UCEC 27099103 + 27099083 27099123 41 TCCACACCACACAGTCAGATCCCCCCATTGCCAGGCATGAG TCCACACCACACAGTTAGATCCCCCCATTGCCAGGCATGAG < 41bp 1 0.0449640483731189 1 0.0292576551437378 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27099103 chr1:27099098 stopgain 1.000 1 16 hm5C_associated_SNPs_43600 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42572 DeepMRMD:1;iRNA_m5C:0.999536712157815 42573 chr19 21281646 21281646 1 + G A UCEC 21281651 + 21281631 21281671 41 CTCTAAGCAAGACCCGATCACCAGTCTAGAGCAAGAAAAAG CTCTAAGCAAGACCCAATCACCAGTCTAGAGCAAGAAAAAG < 41bp 1 0.204846157492583 1 0.167950391769409 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21281651 chr19:21281646 synonymous SNV . 0 16 hm5C_associated_SNPs_43601 0 0 1 0 3 Cytosol 1 0.500231542591406 1 0.999536914817187 hm5C_site_42573 DeepMRMD:1;iRNA_m5C:0.999536914817187 42574 chr19 21281646 21281646 1 + G A UCEC 21281652 + 21281632 21281672 41 TCTAAGCAAGACCCGATCACCAGTCTAGAGCAAGAAAAAGA TCTAAGCAAGACCCAATCACCAGTCTAGAGCAAGAAAAAGA < 41bp 1 0.204307151777936 1 0.345235258340836 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF714 ENSG00000160352 CDS Human protein_coding chr19:21281652 chr19:21281646 synonymous SNV . 0 15 hm5C_associated_SNPs_43602 0 0 1 0 3 Cytosol 1 0.500231557417019 1 0.999536885165962 hm5C_site_42574 DeepMRMD:1;iRNA_m5C:0.999536885165962 42575 chr19 42729223 42729223 1 + T C UCEC 42729206 + 42729186 42729226 41 GAGTTCTTGGAGCATCAGGGCACCCACTTTGACTCCCTAGA GAGTTCTTGGAGCATCAGGGCACCCACTTTGACTCCCCAGA < 41bp 1 0.135839601784002 1 0.0651758015155792 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF526 ENSG00000167625 CDS Human protein_coding chr19:42729206 chr19:42729223 nonsynonymous SNV 0.991 2 38 hm5C_associated_SNPs_43603 0 0 1 0 0 Cytosol 1 0.50023164392109 1 0.999536712157821 hm5C_site_42575 DeepMRMD:1;iRNA_m5C:0.999536712157821 42576 chr11 61491020 61491020 1 + G A UCEC 61491024 + 61491004 61491044 41 ACCAAGAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCG ACCAAGAGGAGGCAGCATAACCTGCGGACCTACAACCTGCG < 41bp 1 0.121769768442737 1 0.194030344486237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491024 chr11:61491020 nonsynonymous SNV 0.995 4 17 hm5C_associated_SNPs_43604 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921394 1 0.999536712157211 hm5C_site_42576 DeepMRMD:1;iRNA_m5C:0.999536712157211 42577 chr1 201970597 201970597 1 + A G UCEC 201970604 + 201970584 201970624 41 GGTGATCAGGATCAGTTTGACAGTTTTCTCAAGGTATAGTC GGTGATCAGGATCGGTTTGACAGTTTTCTCAAGGTATAGTC < 41bp 1 0.50299840335427 1 0.0585473775863647 experiment 0.994003193291461 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201970604 chr1:201970597 nonsynonymous SNV 0.995 0 14 hm5C_associated_SNPs_43605 0 0 1 0 2 Ribosome 1 0.5002323045141 1 0.999535390971799 hm5C_site_42577 DeepMRMD:1;iRNA_m5C:0.999535390971799 42578 chr14 71444260 71444260 1 + T C UCEC 71444269 + 71444249 71444289 41 AGCTATAAAAGTGAGCAGACCAGCTCAACTCACATAGAGAG AGCTATAAAAGCGAGCAGACCAGCTCAACTCACATAGAGAG < 41bp 1 0.204222779731395 1 0.670011699199677 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71444269 chr14:71444260 synonymous SNV . 0 12 hm5C_associated_SNPs_43606 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921453 0.659976601600646 0.999536712157093 hm5C_site_42578 DeepMRMD:0.659976601600646;iRNA_m5C:0.999536712157093 42579 chr14 72152239 72152239 1 + A G UCEC 72152244 + 72152224 72152264 41 CAGGTGCAGAGTCCCATGACCTCGCGGCTGAATGCTGGAAA CAGGTGCAGAGTCCCGTGACCTCGCGGCTGAATGCTGGAAA < 41bp 1 0.491887043442673 1 0.287386119365692 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152244 chr14:72152239 nonsynonymous SNV 0.992 1 16 hm5C_associated_SNPs_43607 0 0 1 0 0 Nucleus 1 0.500231643923428 1 0.999536712153145 hm5C_site_42579 DeepMRMD:1;iRNA_m5C:0.999536712153145 42580 chrX 73751373 73751373 1 + T C UCEC 73751380 + 73751360 73751400 41 GCTCCCCCAACCCTGAGGAACCAATCTAATGCCTTTCTTGC GCTCCCCCAACCCCGAGGAACCAATCTAATGCCTTTCTTGC < 41bp 1 0.0563450405119472 1 0.0488646626472473 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73751380 chrX:73751373 synonymous SNV . 0 14 hm5C_associated_SNPs_43608 0 0 0 0 0 Ribosome 1 0.500231643940495 1 0.99953671211901 hm5C_site_42580 DeepMRMD:1;iRNA_m5C:0.99953671211901 42581 chr7 138944039 138944039 1 + T C UCEC 138944058 + 138944038 138944078 41 TTGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG TCGAGATGAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAG < 41bp 1 0.527479017416246 1 0.556599676609039 experiment 0.945041965167507 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBN2 ENSG00000157741 CDS Human protein_coding chr7:138944058 chr7:138944039 synonymous SNV . 0 2 hm5C_associated_SNPs_43609 0 0 1 0 2 Cytosol 1 0.500231643921091 0.886800646781922 0.999536712157818 hm5C_site_42581 DeepMRMD:0.886800646781922;iRNA_m5C:0.999536712157818 42582 chr17 49239204 49239204 1 + T C UCEC 49239220 + 49239200 49239240 41 TGAATGACAGGAGGGCAGACCACATTGCTTTTCACATCCAT TGAACGACAGGAGGGCAGACCACATTGCTTTTCACATCCAT < 41bp 1 0.351949939793601 1 0.267435252666473 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NME1 ENSG00000239672 CDS Human protein_coding chr17:49239220 chr17:49239204 stoploss 0.973 0 5 hm5C_associated_SNPs_43610 0 0 1 0 0 Ribosome 1 0.500231637789556 1 0.999536724420889 hm5C_site_42582 DeepMRMD:1;iRNA_m5C:0.999536724420889 42583 chr17 16344603 16344603 1 + T C UCEC 16344596 + 16344576 16344616 41 GCAGATTGTGTAGTGGTGAACCTATGGTTTTCTGAAGATAT GCAGATTGTGTAGTGGTGAACCTATGGCTTTCTGAAGATAT < 41bp 1 0.0550239272455479 1 0.0686910152435303 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNORD65 ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16344596 chr17:16344603 . . 0 28 hm5C_associated_SNPs_43612 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_42583 DeepMRMD:1;iRNA_m5C:0.999536712157815 42584 chr12 132547018 132547018 1 + A G UCEC 132547025 + 132547005 132547045 41 TCATAGCCACAGGAGTTCAGCTCCCTGGAAAAACCATCACA TCATAGCCACAGGGGTTCAGCTCCCTGGAAAAACCATCACA < 41bp 1 0.142508230177696 1 0.41101461648941 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EP400 ENSG00000183495 CDS Human protein_coding chr12:132547025 chr12:132547018 synonymous SNV . 0 14 hm5C_associated_SNPs_43613 0 0 0 0 0 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_42584 DeepMRMD:1;iRNA_m5C:0.999536712157814 42585 chr2 118579628 118579628 1 + C T UCEC 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGATCAT < 41bp 1 0.500318193631927 1 0.115370273590088 experiment 0.999363612736145 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579628 synonymous SNV . 0 38 hm5C_associated_SNPs_43614 0 0 1 0 1 Nucleus 1 0.50023164392109 1 0.99953671215782 hm5C_site_42585 DeepMRMD:1;iRNA_m5C:0.99953671215782 42586 chr19 54606430 54606430 1 + G A UCEC 54606432 + 54606412 54606452 41 ACCCCTTCAGGAGTCGGCGCCTTCCTCAAGAATGCCTGGGA ACCCCTTCAGGAGTCGGCACCTTCCTCAAGAATGCCTGGGA < 41bp 1 0.144783298860693 1 0.049350768327713 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54606432 chr19:54606430 nonsynonymous SNV 0.798 0 19 hm5C_associated_SNPs_43615 0 0 1 0 2 Ribosome 1 0.500231643088076 1 0.999536713823848 hm5C_site_42586 DeepMRMD:1;iRNA_m5C:0.999536713823848 42587 chr1 223943295 223943295 1 + C T UCEC 223943279 + 223943259 223943299 41 TGCACCTTCCTGGTGGGGCTCATTCAGAAGCACCGACGGCG TGCACCTTCCTGGTGGGGCTCATTCAGAAGCACCGATGGCG < 41bp 1 0.0622933732858686 1 0.0665687024593353 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943279 chr1:223943295 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_43616 0 0 1 0 1 Ribosome 1 0.500231643921115 1 0.999536712157769 hm5C_site_42587 DeepMRMD:1;iRNA_m5C:0.999536712157769 42588 chr1 223943295 223943295 1 + C T UCEC 223943292 + 223943272 223943312 41 TGGGGCTCATTCAGAAGCACCGACGGCGGCAGAGGAAGATG TGGGGCTCATTCAGAAGCACCGATGGCGGCAGAGGAAGATG < 41bp 1 0.415938616851884 1 0.194166362285614 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943292 chr1:223943295 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_43617 0 0 1 0 1 Ribosome 1 0.500232311719828 1 0.999535376560343 hm5C_site_42588 DeepMRMD:1;iRNA_m5C:0.999535376560343 42589 chr16 30081513 30081513 1 + G A UCEC 30081505 + 30081485 30081525 41 TGGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACG TGGGGCTGCTGCCAGCGAGTCCCTCTTCATCTCTAACCACG < 41bp 1 0.0574239816337996 1 0.0372637510299683 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081505 chr16:30081513 nonsynonymous SNV 0.984 1 29 hm5C_associated_SNPs_43619 0 0 1 0 1 Cytosol 1 0.500232288319435 1 0.99953542336113 hm5C_site_42589 DeepMRMD:1;iRNA_m5C:0.99953542336113 42590 chr16 30081513 30081513 1 + G A UCEC 30081506 + 30081486 30081526 41 GGGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGC GGGGCTGCTGCCAGCGAGTCCCTCTTCATCTCTAACCACGC < 41bp 1 0.0533177172806366 1 0.0573436319828033 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081506 chr16:30081513 nonsynonymous SNV 0.984 1 28 hm5C_associated_SNPs_43620 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42590 DeepMRMD:1;iRNA_m5C:0.999536712157815 42591 chr16 30081513 30081513 1 + G A UCEC 30081507 + 30081487 30081527 41 GGGCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCC GGGCTGCTGCCAGCGAGTCCCTCTTCATCTCTAACCACGCC < 41bp 1 0.188143259712083 1 0.137648612260818 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081507 chr16:30081513 nonsynonymous SNV 0.984 1 27 hm5C_associated_SNPs_43621 0 0 1 0 1 Cytosol 1 0.500231643921105 1 0.999536712157791 hm5C_site_42591 DeepMRMD:1;iRNA_m5C:0.999536712157791 42592 chr16 30081513 30081513 1 + G A UCEC 30081509 + 30081489 30081529 41 GCTGCTGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCCTA GCTGCTGCCAGCGAGTCCCTCTTCATCTCTAACCACGCCTA < 41bp 1 0.600948395342813 1 0.800184488296509 experiment 0.798103209314374 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDOA ENSG00000149925 CDS Human protein_coding chr16:30081509 chr16:30081513 nonsynonymous SNV 0.984 1 25 hm5C_associated_SNPs_43622 0 0 1 0 1 Cytosol 1 0.500231643921102 0.399631023406982 0.999536712157796 hm5C_site_42592 DeepMRMD:0.399631023406982;iRNA_m5C:0.999536712157796 42593 chr19 45762361 45762361 1 + G A UCEC 45762352 + 45762332 45762372 41 TCGCCTCCTGTCCCGAGGAGCAGCCCCACGTGGGCAACTAC TCGCCTCCTGTCCCGAGGAGCAGCCCCACATGGGCAACTAC < 41bp 1 0.200086171050914 1 0.6030313372612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MARK4 ENSG00000007047 CDS Human protein_coding chr19:45762352 chr19:45762361 nonsynonymous SNV 0.991 3 30 hm5C_associated_SNPs_43623 0 0 1 0 1 Nucleus 1 0.500231643921092 0.7939373254776 0.999536712157815 hm5C_site_42593 DeepMRMD:0.7939373254776;iRNA_m5C:0.999536712157815 42594 chr11 44639775 44639775 1 + C T UCEC 44639783 + 44639763 44639803 41 CTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGCGA CTCATGAATCGCTCTGAGGTCACCTACCCCTGTTCCTGCGA < 41bp 1 0.378468853508745 1 0.117589205503464 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD82 ENSG00000085117 CDS Human protein_coding chr11:44639783 chr11:44639775 nonsynonymous SNV 0.001 0 13 hm5C_associated_SNPs_43624 0 0 1 0 1 Nucleus 1 0.500229935985307 1 0.999540128029386 hm5C_site_42594 DeepMRMD:1;iRNA_m5C:0.999540128029386 42595 chr3 40499409 40499409 1 + G T UCEC 40499425 + 40499405 40499445 41 GGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA GGCCTGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAA < 41bp 1 0.350756842213429 1 0.0524573922157288 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPL14 ENSG00000188846 CDS Human protein_coding chr3:40499425 chr3:40499409 nonsynonymous SNV 0.999 3 5 hm5C_associated_SNPs_43625 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42595 DeepMRMD:1;iRNA_m5C:0.999536712157815 42596 chr11 110333183 110333183 1 + G T UCEC 110333167 + 110333147 110333187 41 AGTGGCTGATGCCAGACAATCCATTGATGTGGGCAAGACCT AGTGGCTGATGCCAGACAATCCATTGATGTGGGCAATACCT < 41bp 1 0.176033207513307 1 0.0583765208721161 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FDX1 ENSG00000137714 CDS Human protein_coding chr11:110333167 chr11:110333183 nonsynonymous SNV 0.991 3 37 hm5C_associated_SNPs_43626 0 0 0 0 0 Cytosol 1 0.50023164390417 1 0.999536712191659 hm5C_site_42596 DeepMRMD:1;iRNA_m5C:0.999536712191659 42597 chr9 2186134 2186134 1 + G A UCEC 2186154 + 2186134 2186174 41 GAGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG AAGTGCCCGGCAGAAAATTGCCAAAGAGGAAGAGAGTGAGG < 41bp 1 0.204685926841758 1 0.0793546736240387 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186154 chr9:2186134 synonymous SNV . 0 1 hm5C_associated_SNPs_43627 0 0 1 0 1 Nucleus 1 0.500231643853954 1 0.999536712292092 hm5C_site_42597 DeepMRMD:1;iRNA_m5C:0.999536712292092 42598 chr13 20221288 20221288 1 + G A UCEC 20221300 + 20221280 20221320 41 AGAAAACTGTGCCTAAAAAGCAGAGGAATCAAGACAGAAGC AGAAAACTATGCCTAAAAAGCAGAGGAATCAAGACAGAAGC < 41bp 1 0.698659547421484 1 0.810785293579102 experiment 0.602680905157032 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20221300 chr13:20221288 nonsynonymous SNV 0.001 0 9 hm5C_associated_SNPs_43628 0 0 1 0 0 Ribosome 1 0.50023164400076 0.378429412841796 0.999536711998481 hm5C_site_42598 DeepMRMD:0.378429412841796;iRNA_m5C:0.999536711998481 42599 chr7 55240744 55240744 1 + G T UCEC 55240738 + 55240718 55240758 41 CCTCTTGCTGCTGGTGGTGGCCCTGGGGATCGGCCTCTTCA CCTCTTGCTGCTGGTGGTGGCCCTGGTGATCGGCCTCTTCA < 41bp 1 0.280832086317608 1 0.384992212057114 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55240738 chr7:55240744 nonsynonymous SNV 0.246 0 27 hm5C_associated_SNPs_43629 0 0 1 0 2 Nucleus 1 0.500231643923426 1 0.999536712153147 hm5C_site_42599 DeepMRMD:1;iRNA_m5C:0.999536712153147 42600 chr19 57796003 57796003 1 + G A UCEC 57795986 + 57795966 57796006 41 GTGGGGGCAGTTGGACGTGACCCAGAGGGCCTTGTACGTGG GTGGGGGCAGTTGGACGTGACCCAGAGGGCCTTGTACATGG < 41bp 1 0.683635834615036 1 0.110977917909622 experiment 0.632728330769927 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57795986 chr19:57796003 nonsynonymous SNV 0.936 1 38 hm5C_associated_SNPs_43630 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42600 DeepMRMD:1;iRNA_m5C:0.999536712157815 42601 chr1 120286531 120286531 1 + G A UCEC 120286511 + 120286491 120286531 41 AGTTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTG AGTTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTA < 41bp 1 0.378419971094625 1 0.729426383972168 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286511 chr1:120286531 synonymous SNV . 0 41 hm5C_associated_SNPs_43632 0 0 1 0 1 Ribosome 1 0.500231643921092 0.541147232055664 0.999536712157815 hm5C_site_42601 DeepMRMD:0.541147232055664;iRNA_m5C:0.999536712157815 42602 chr1 120286531 120286531 1 + G A UCEC 120286513 + 120286493 120286533 41 TTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCG TTTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTACG < 41bp 1 0.173638529214594 1 0.251030623912811 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286513 chr1:120286531 synonymous SNV . 0 39 hm5C_associated_SNPs_43633 0 0 1 0 1 Ribosome 1 0.500231643925482 1 0.999536712149036 hm5C_site_42602 DeepMRMD:1;iRNA_m5C:0.999536712149036 42603 chr1 120286531 120286531 1 + G A UCEC 120286514 + 120286494 120286534 41 TTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCGG TTCTTCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTACGG < 41bp 1 0.430939809660697 1 0.168971568346024 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286514 chr1:120286531 synonymous SNV . 0 38 hm5C_associated_SNPs_43634 0 0 1 0 1 Ribosome 1 0.500231643844007 1 0.999536712311986 hm5C_site_42603 DeepMRMD:1;iRNA_m5C:0.999536712311986 42604 chr1 120286531 120286531 1 + G A UCEC 120286518 + 120286498 120286538 41 TCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTGCGGCTGC TCTATTTCCAGGCCTCCTGGCAGAGGCAGGCGTACGGCTGC < 41bp 1 0.676395304179332 1 0.913830876350403 experiment 0.647209391641336 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286518 chr1:120286531 synonymous SNV . 0 34 hm5C_associated_SNPs_43635 0 0 1 0 1 Ribosome 1 0.500231643921687 0.172338247299194 0.999536712156626 hm5C_site_42604 DeepMRMD:0.172338247299194;iRNA_m5C:0.999536712156626 42605 chr1 120286531 120286531 1 + G A UCEC 120286535 + 120286515 120286555 41 TGGCAGAGGCAGGCGTGCGGCTGCTGTCCTACCAGACTTCA TGGCAGAGGCAGGCGTACGGCTGCTGTCCTACCAGACTTCA < 41bp 1 0.631073402661745 1 0.514018714427948 experiment 0.73785319467651 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286535 chr1:120286531 synonymous SNV . 0 17 hm5C_associated_SNPs_43636 0 0 1 0 1 Ribosome 1 0.500231538179617 0.971962571144104 0.999536923640766 hm5C_site_42605 DeepMRMD:0.971962571144104;iRNA_m5C:0.999536923640766 42606 chr1 120286531 120286531 1 + G A UCEC 120286542 + 120286522 120286562 41 GGCAGGCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGT GGCAGGCGTACGGCTGCTGTCCTACCAGACTTCACTGGTGT < 41bp 1 0.0664526101727658 1 0.190434247255325 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286542 chr1:120286531 synonymous SNV . 0 10 hm5C_associated_SNPs_43637 0 0 1 0 1 Ribosome 1 0.500232167678004 1 0.999535664643991 hm5C_site_42606 DeepMRMD:1;iRNA_m5C:0.999535664643991 42607 chr1 120286531 120286531 1 + G A UCEC 120286543 + 120286523 120286563 41 GCAGGCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGTC GCAGGCGTACGGCTGCTGTCCTACCAGACTTCACTGGTGTC < 41bp 1 0.268831553520533 1 0.111624002456665 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286543 chr1:120286531 synonymous SNV . 0 9 hm5C_associated_SNPs_43638 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42607 DeepMRMD:1;iRNA_m5C:0.999536712157815 42608 chr1 120286531 120286531 1 + G A UCEC 120286547 + 120286527 120286567 41 GCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGAT GCGTACGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGAT < 41bp 1 0.550598158967972 1 0.631887555122375 experiment 0.898803682064057 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286547 chr1:120286531 synonymous SNV . 0 5 hm5C_associated_SNPs_43639 0 0 1 0 1 Ribosome 1 0.500231643921093 0.73622488975525 0.999536712157815 hm5C_site_42608 DeepMRMD:0.73622488975525;iRNA_m5C:0.999536712157815 42609 chr1 120286531 120286531 1 + G A UCEC 120286551 + 120286531 120286571 41 GCGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGATGGGG ACGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGATGGGG < 41bp 1 0.425666303077378 1 0.51078873872757 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120286551 chr1:120286531 synonymous SNV . 0 1 hm5C_associated_SNPs_43640 0 0 1 0 1 Ribosome 1 0.500231643920731 0.97842252254486 0.999536712158537 hm5C_site_42609 DeepMRMD:0.97842252254486;iRNA_m5C:0.999536712158537 42610 chr17 65722731 65722731 1 + G A UCEC 65722746 + 65722726 65722766 41 ACGTCGCAGTCCTAGGAAGTCCACTAGCAGCTTCTAAGGGT ACGTCACAGTCCTAGGAAGTCCACTAGCAGCTTCTAAGGGT < 41bp 1 0.417474137489494 1 0.227540463209152 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65722746 chr17:65722731 nonsynonymous SNV 0.463 2 6 hm5C_associated_SNPs_43641 0 0 1 0 0 Nucleus 1 0.50023164306401 1 0.99953671387198 hm5C_site_42610 DeepMRMD:1;iRNA_m5C:0.99953671387198 42611 chr9 131893878 131893878 1 + G T UCEC 131893872 + 131893852 131893892 41 GTGCCTGAGGTGGCTGTTTACCTAAAGGAGTCAGTGGGGAA GTGCCTGAGGTGGCTGTTTACCTAAATGAGTCAGTGGGGAA < 41bp 1 0.439955819451615 1 0.451251327991486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131893872 chr9:131893878 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_43642 0 0 1 0 2 Nucleus 1 0.500231643921054 1 0.999536712157892 hm5C_site_42611 DeepMRMD:1;iRNA_m5C:0.999536712157892 42612 chr2 131801890 131801890 1 + G A UCEC 131801875 + 131801855 131801895 41 AGGCCAGCATCTGGCAGGACCTGCTCCGCCGCGACGTGTTG AGGCCAGCATCTGGCAGGACCTGCTCCGCCGCGACATGTTG < 41bp 1 0.157992927221186 1 0.0961700677871704 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131801875 chr2:131801890 nonsynonymous SNV 0.994 1 36 hm5C_associated_SNPs_43643 0 0 0 0 1 nucleus 1 0.500231643926121 1 0.999536712147758 hm5C_site_42612 DeepMRMD:1;iRNA_m5C:0.999536712147758 42613 chrX 70516429 70516429 1 + T G UCEC 70516419 + 70516399 70516439 41 TTGTTCTTTCTTCCAGATTTCCTCGTCCTGTGACTGTGGAG TTGTTCTTTCTTCCAGATTTCCTCGTCCTGGGACTGTGGAG < 41bp 1 0.116631000270126 1 0.0549381375312805 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516419 chrX:70516429 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_43644 0 0 1 0 2 Nucleus 1 0.500231643921096 1 0.999536712157809 hm5C_site_42613 DeepMRMD:1;iRNA_m5C:0.999536712157809 42614 chrX 70516429 70516429 1 + T G UCEC 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCTGGGACTGTGGAGCCCATGGACCAGTTAGATGAT < 41bp 1 0.115997845938364 1 0.146133720874786 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516429 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_43645 0 0 1 0 2 Nucleus 1 0.500227105932301 1 0.999545788135399 hm5C_site_42614 DeepMRMD:1;iRNA_m5C:0.999545788135399 42615 chr19 40718824 40718824 1 + G T UCEC 40718840 + 40718820 40718860 41 AGAAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAG AGAATGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAG < 41bp 1 0.0739726165210886 1 0.182797074317932 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718840 chr19:40718824 nonsynonymous SNV 0.810 4 5 hm5C_associated_SNPs_43646 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921099 1 0.999536712157803 hm5C_site_42615 DeepMRMD:1;iRNA_m5C:0.999536712157803 42616 chr19 40718824 40718824 1 + G T UCEC 40718841 + 40718821 40718861 41 GAAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGG GAATGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGG < 41bp 1 0.0738908346477943 1 0.0414059162139893 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718841 chr19:40718824 nonsynonymous SNV 0.810 4 4 hm5C_associated_SNPs_43647 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920184 1 0.999536712159632 hm5C_site_42616 DeepMRMD:1;iRNA_m5C:0.999536712159632 42617 chr19 40718824 40718824 1 + G T UCEC 40718842 + 40718822 40718862 41 AAGGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGGA AATGGACGAACGTGGGGGCCCAGCTCCACCCTGCAGAAGGA < 41bp 1 0.19564559802581 1 0.188491702079773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718842 chr19:40718824 nonsynonymous SNV 0.810 4 3 hm5C_associated_SNPs_43648 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164392161 1 0.99953671215678 hm5C_site_42617 DeepMRMD:1;iRNA_m5C:0.99953671215678 42618 chr3 8579067 8579067 1 + G T UCEC 8579084 + 8579064 8579104 41 AAAGATCCCACTTTTGACACCATCACCTACGAGTGGGCTCC AAATATCCCACTTTTGACACCATCACCTACGAGTGGGCTCC < 41bp 1 0.280853675432646 1 0.173721134662628 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8579084 chr3:8579067 nonsynonymous SNV 0.996 5 4 hm5C_associated_SNPs_43649 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42618 DeepMRMD:1;iRNA_m5C:0.999536712157815 42619 chr3 47447487 47447487 1 + G A UCEC 47447468 + 47447448 47447488 41 CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGC CCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAAC < 41bp 1 0.0733231057400211 1 0.0214638411998749 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47447468 chr3:47447487 nonsynonymous SNV 0.937 3 40 hm5C_associated_SNPs_43650 0 0 1 0 3 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42619 DeepMRMD:1;iRNA_m5C:0.999536712157815 42620 chr19 37853743 37853743 1 + G T UCEC 37853759 + 37853739 37853779 41 CAGCGGACACACTCAGGGCTCAAGCCTTATGTGTGCAAGGA CAGCTGACACACTCAGGGCTCAAGCCTTATGTGTGCAAGGA < 41bp 1 0.277917027449294 1 0.211930960416794 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HKR1 ENSG00000181666 CDS Human protein_coding chr19:37853759 chr19:37853743 nonsynonymous SNV 0.872 2 5 hm5C_associated_SNPs_43651 0 0 1 0 0 exosome 1 0.500231977806446 1 0.999536044387108 hm5C_site_42620 DeepMRMD:1;iRNA_m5C:0.999536044387108 42621 chr16 88501727 88501727 1 + C T UCEC 88501733 + 88501713 88501753 41 GCCGGAGGTGGCGCCGAGAGCCCACCGTGGACTCTCCTAGC GCCGGAGGTGGCGCTGAGAGCCCACCGTGGACTCTCCTAGC < 41bp 1 0.0481931590026008 1 0.255590409040451 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88501733 chr16:88501727 stopgain 0.000 0 15 hm5C_associated_SNPs_43652 0 0 0 0 0 exosome 1 0.500231643939727 1 0.999536712120546 hm5C_site_42621 DeepMRMD:1;iRNA_m5C:0.999536712120546 42622 chr12 113379475 113379475 1 + G T UCEC 113379481 + 113379461 113379501 41 GGACCAGAGGGCCCGCCGTGCAGAGATCCTCAGTGAGATGC GGACCAGAGGGCCCTCCGTGCAGAGATCCTCAGTGAGATGC < 41bp 1 0.629547458764369 1 0.309429168701172 experiment 0.740905082471261 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113379481 chr12:113379475 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_43653 0 0 1 0 0 Nucleus 1 0.500231795612408 1 0.999536408775183 hm5C_site_42622 DeepMRMD:1;iRNA_m5C:0.999536408775183 42623 chr9 95869975 95869975 1 + C A UCEC 95869992 + 95869972 95870012 41 CCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC CCGACTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGC < 41bp 1 0.0548829530513539 1 0.0647945404052734 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CARD19 ENSG00000165233 CDS Human protein_coding chr9:95869992 chr9:95869975 synonymous SNV . 0 4 hm5C_associated_SNPs_43654 0 0 1 0 1 Ribosome 1 0.500232026649712 1 0.999535946700576 hm5C_site_42623 DeepMRMD:1;iRNA_m5C:0.999535946700576 42624 chr8 107754460 107754460 1 + C T UCEC 107754474 + 107754454 107754494 41 TTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC TTGGTGTGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGC < 41bp 1 0.0632397625413394 1 0.0742046236991882 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754474 chr8:107754460 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_43655 0 0 0 1 2 chromatin 1 0.500222587017533 1 0.999554825964933 hm5C_site_42624 DeepMRMD:1;iRNA_m5C:0.999554825964933 42625 chr8 107754460 107754460 1 + C T UCEC 107754475 + 107754455 107754495 41 TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT TGGTGTGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCT < 41bp 1 0.161229795219191 1 0.092203289270401 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107754475 chr8:107754460 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_43656 0 0 0 1 2 chromatin 1 0.500265343481459 1 0.999469313037082 hm5C_site_42625 DeepMRMD:1;iRNA_m5C:0.999469313037082 42626 chr2 113950926 113950926 1 + C T UCEC 113950934 + 113950914 113950954 41 CACCATTGCAATCCGGGGATCTTCCCCTCAGTAGGTAGGGA CACCATTGCAATTCGGGGATCTTCCCCTCAGTAGGTAGGGA < 41bp 1 0.0433421548313538 1 0.131646811962128 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950934 chr2:113950926 nonsynonymous SNV 0.453 2 13 hm5C_associated_SNPs_43657 0 0 0 0 2 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_42626 DeepMRMD:1;iRNA_m5C:0.999536712157814 42627 chr16 1394267 1394267 1 + G T UCEC 1394270 + 1394250 1394290 41 TTCCAACCCTCCTTTGAGATCTGCCCCTTCGAGTCGGAGCT TTCCAACCCTCCTTTGATATCTGCCCCTTCGAGTCGGAGCT < 41bp 1 0.244644895861208 1 0.248470336198807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394270 chr16:1394267 nonsynonymous SNV 0.942 0 18 hm5C_associated_SNPs_43658 0 0 0 0 2 chromatin 1 0.500231643919264 1 0.999536712161473 hm5C_site_42627 DeepMRMD:1;iRNA_m5C:0.999536712161473 42628 chr19 54942081 54942081 1 + C T UCEC 54942079 + 54942059 54942099 41 TGTGCCTCAGTTCCCTTCAGCGCAGGTCGGTGGGTGGGCGC TGTGCCTCAGTTCCCTTCAGCGTAGGTCGGTGGGTGGGCGC < 41bp 1 0.45763186421373 1 0.530285120010376 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942079 chr19:54942081 stopgain 0.826 1 23 hm5C_associated_SNPs_43659 0 0 0 0 2 cytosol 1 0.50023164285207 0.939429759979248 0.999536714295859 hm5C_site_42628 DeepMRMD:0.939429759979248;iRNA_m5C:0.999536714295859 42629 chr6 64288837 64288837 1 + A G UCEC 64288830 + 64288810 64288850 41 CTTTTGATGATGGTGCACCACCATCCAACCAGATTGTTGAT CTTTTGATGATGGTGCACCACCATCCAGCCAGATTGTTGAT < 41bp 1 0.0513089219451537 1 0.0156221985816956 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 CDS Human protein_coding chr6:64288830 chr6:64288837 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_43660 0 0 1 0 2 Ribosome 1 0.500067925229529 1 0.999864149540942 hm5C_site_42629 DeepMRMD:1;iRNA_m5C:0.999864149540942 42630 chr6 64288837 64288837 1 + A G UCEC 64288831 + 64288811 64288851 41 TTTTGATGATGGTGCACCACCATCCAACCAGATTGTTGATG TTTTGATGATGGTGCACCACCATCCAGCCAGATTGTTGATG < 41bp 1 0.133822398116116 1 0.0610883235931396 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTP4A1 ENSG00000112245 CDS Human protein_coding chr6:64288831 chr6:64288837 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_43661 0 0 1 0 2 Ribosome 1 0.500231643921393 1 0.999536712157214 hm5C_site_42630 DeepMRMD:1;iRNA_m5C:0.999536712157214 42631 chr12 3149321 3149321 1 + C T UCEC 3149330 + 3149310 3149350 41 ACCGCATCCACCGGTCCCCGCTCTGTGAGTACATGATCAAC ACCGCATCCACTGGTCCCCGCTCTGTGAGTACATGATCAAC < 41bp 1 0.135215591067749 1 0.408866345882416 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3149330 chr12:3149321 nonsynonymous SNV 0.989 3 12 hm5C_associated_SNPs_43662 0 0 1 0 1 Cytosol 1 0.500231631412988 1 0.999536737174024 hm5C_site_42631 DeepMRMD:1;iRNA_m5C:0.999536737174024 42632 chr19 40477114 40477114 1 + A G UCEC 40477096 + 40477076 40477116 41 CATCCCAGGCCACACAGAGGCCGGCTTGGTCACTATGGAGG CATCCCAGGCCACACAGAGGCCGGCTTGGTCACTATGGGGG < 41bp 1 0.556876773555952 1 0.462213456630707 experiment 0.886246452888095 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40477096 chr19:40477114 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_43663 0 0 1 0 1 Ribosome 1 0.500231643921091 1 0.999536712157819 hm5C_site_42632 DeepMRMD:1;iRNA_m5C:0.999536712157819 42633 chr19 40477114 40477114 1 + A G UCEC 40477097 + 40477077 40477117 41 ATCCCAGGCCACACAGAGGCCGGCTTGGTCACTATGGAGGA ATCCCAGGCCACACAGAGGCCGGCTTGGTCACTATGGGGGA < 41bp 1 0.614067415320034 1 0.252048909664154 experiment 0.771865169359932 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40477097 chr19:40477114 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_43664 0 0 1 0 1 Ribosome 1 0.500231643921395 1 0.99953671215721 hm5C_site_42633 DeepMRMD:1;iRNA_m5C:0.99953671215721 42634 chr1 154248142 154248142 1 + G A UCEC 154248129 + 154248109 154248149 41 CCTCCAGCCCTGGATGATGCCTTTTCCATCCTGGACTTATT CCTCCAGCCCTGGATGATGCCTTTTCCATCCTGAACTTATT < 41bp 1 0.076892347097522 1 0.0463041067123413 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HAX1 ENSG00000143575 CDS Human protein_coding chr1:154248129 chr1:154248142 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_43665 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42634 DeepMRMD:1;iRNA_m5C:0.999536712157815 42635 chr7 99751535 99751535 1 + G T UCEC 99751531 + 99751511 99751551 41 TGCTGGTGACGGTGTCAGGACAGAGGGTGTTTGTGGTGAAG TGCTGGTGACGGTGTCAGGACAGATGGTGTTTGTGGTGAAG < 41bp 1 0.475839030433979 1 0.347814917564392 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751531 chr7:99751535 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_43666 0 0 1 0 1 Cytosol 1 0.500231643897685 1 0.999536712204631 hm5C_site_42635 DeepMRMD:1;iRNA_m5C:0.999536712204631 42636 chr8 61533342 61533342 1 + G A UCEC 61533362 + 61533342 61533382 41 GTCTAGCTGCCCAACGGGGCCTACTCACTTATTCTTTCACC ATCTAGCTGCCCAACGGGGCCTACTCACTTATTCTTTCACC < 41bp 1 0.45504624963771 1 0.0626246929168701 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB2A ENSG00000104388 CDS Human protein_coding chr8:61533362 chr8:61533342 nonsynonymous SNV 0.920 1 1 hm5C_associated_SNPs_43667 0 0 1 0 0 Ribosome 1 0.500231643920379 1 0.999536712159243 hm5C_site_42636 DeepMRMD:1;iRNA_m5C:0.999536712159243 42637 chr9 139234226 139234226 1 + C T UCEC 139234211 + 139234191 139234231 41 CCTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGCGCAGG CCTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGTGCAGG < 41bp 1 0.210080804181927 1 0.0500581860542297 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139234211 chr9:139234226 nonsynonymous SNV 0.979 1 36 hm5C_associated_SNPs_43668 0 0 0 0 1 Cytosol 1 0.50023163160692 1 0.99953673678616 hm5C_site_42637 DeepMRMD:1;iRNA_m5C:0.99953673678616 42638 chr9 139234226 139234226 1 + C T UCEC 139234212 + 139234192 139234232 41 CTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGCGCAGGC CTGGGAAATGCCTACGTGTCCATGGGGCGCCCAGTGCAGGC < 41bp 1 0.688507134295463 1 0.329676806926727 experiment 0.622985731409075 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139234212 chr9:139234226 nonsynonymous SNV 0.979 1 35 hm5C_associated_SNPs_43669 0 0 0 0 1 Cytosol 1 0.500231643921123 1 0.999536712157753 hm5C_site_42638 DeepMRMD:1;iRNA_m5C:0.999536712157753 42639 chr6 44219833 44219833 1 + C T UCEC 44219814 + 44219794 44219834 41 CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACT CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTATT < 41bp 1 0.374475283720128 1 0.153904289007187 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219814 chr6:44219833 synonymous SNV . 0 40 hm5C_associated_SNPs_43670 0 0 1 0 1 Nucleus 1 0.500231862522277 1 0.999536274955446 hm5C_site_42639 DeepMRMD:1;iRNA_m5C:0.999536274955446 42640 chr6 44219833 44219833 1 + C T UCEC 44219840 + 44219820 44219860 41 CCATTGACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGAT CCATTGACGAGTATTGTGTGCAGCAGCTCAAGGAATTTGAT < 41bp 1 0.639698562583929 1 0.328569531440735 experiment 0.720602874832143 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219840 chr6:44219833 synonymous SNV . 0 14 hm5C_associated_SNPs_43672 0 0 1 0 1 Nucleus 1 0.50030407775772 1 0.99939184448456 hm5C_site_42640 DeepMRMD:1;iRNA_m5C:0.99939184448456 42641 chr17 35346649 35346649 1 + G A UCEC 35346663 + 35346643 35346683 41 TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT TCTATCAAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT < 41bp 1 0.643172320718985 1 0.0609728395938873 experiment 0.713655358562029 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35346663 chr17:35346649 nonsynonymous SNV 0.997 1 7 hm5C_associated_SNPs_43674 0 0 1 1 1 chromatin 1 0.500227431122877 1 0.999545137754246 hm5C_site_42641 DeepMRMD:1;iRNA_m5C:0.999545137754246 42642 chr17 43323034 43323034 1 + G T UCEC 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTCGGAGATAACCCCAAGACCACATCCCCAGG < 41bp 1 0.599772598618448 1 0.385723382234573 experiment 0.800454802763104 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323037 chr17:43323034 nonsynonymous SNV 0.999 3 18 hm5C_associated_SNPs_43675 0 0 0 0 3 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_42642 DeepMRMD:1;iRNA_m5C:0.999536712157816 42643 chr14 96707381 96707381 1 + T A UCEC 96707365 + 96707345 96707385 41 TCCTGAATGTCGTGGGCTTCCTGCTGCCCCTGAGTGTCATC TCCTGAATGTCGTGGGCTTCCTGCTGCCCCTGAGTGACATC < 41bp 1 0.655033630862222 1 0.232610374689102 experiment 0.689932738275557 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BDKRB2 ENSG00000168398 CDS Human protein_coding chr14:96707365 chr14:96707381 nonsynonymous SNV 0.656 1 37 hm5C_associated_SNPs_43676 0 0 0 0 0 exosome 1 0.500231768963346 1 0.999536462073308 hm5C_site_42643 DeepMRMD:1;iRNA_m5C:0.999536462073308 42644 chr1 116946553 116946553 1 + T C UCEC 116946536 + 116946516 116946556 41 TGGTTCTGTGCCTTCCCCTACTCTCTTCTCATCTTCGTATA TGGTTCTGTGCCTTCCCCTACTCTCTTCTCATCTTCGCATA < 41bp 1 0.151625601506318 1 0.0622618198394775 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116946536 chr1:116946553 nonsynonymous SNV 0.975 3 38 hm5C_associated_SNPs_43677 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42644 DeepMRMD:1;iRNA_m5C:0.999536712157815 42645 chr11 47297571 47297571 1 + G A UCEC 47297563 + 47297543 47297583 41 CTATCGATTGCTGCGCTCCCCAGTACCCGTCTCTGGGCAGA CTATCGATTGCTGCGCTCCCCAGTACCCATCTCTGGGCAGA < 41bp 1 0.508057332337942 1 0.311990439891815 experiment 0.983885335324117 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MADD ENSG00000110514 CDS Human protein_coding chr11:47297563 chr11:47297571 nonsynonymous SNV 0.977 1 29 hm5C_associated_SNPs_43678 0 0 1 0 0 Nucleus 1 0.500231644234293 1 0.999536711531414 hm5C_site_42645 DeepMRMD:1;iRNA_m5C:0.999536711531414 42646 chr17 40817774 40817774 1 + G A UCEC 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATCGGCCTCATCACCTCGCTCATTCCCACCCCACGGCTC < 41bp 1 0.345634287089294 1 0.03245609998703 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817774 nonsynonymous SNV 0.999 4 15 hm5C_associated_SNPs_43679 0 0 0 0 2 Cytosol 1 0.500231447642868 1 0.999537104714264 hm5C_site_42646 DeepMRMD:1;iRNA_m5C:0.999537104714264 42647 chr19 36219692 36219692 1 + C T UCEC 36219685 + 36219665 36219705 41 CTGTCCACAGCGGAGTCCTTCCCAATGCGGTGTTGCCCCCA CTGTCCACAGCGGAGTCCTTCCCAATGTGGTGTTGCCCCCA < 41bp 1 0.227229676571153 1 0.368371963500977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36219685 chr19:36219692 nonsynonymous SNV 0.996 4 28 hm5C_associated_SNPs_43680 0 0 1 0 2 chromatin 1 0.500214236503597 1 0.999571526992806 hm5C_site_42647 DeepMRMD:1;iRNA_m5C:0.999571526992806 42648 chr21 47983778 47983778 1 + C T UCEC 47983797 + 47983777 47983817 41 CCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG CTCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGG < 41bp 1 0.315049458703213 1 0.307493925094604 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47983797 chr21:47983778 nonsynonymous SNV 0.724 4 2 hm5C_associated_SNPs_43681 0 0 1 0 2 Cytosol 1 0.501518247753509 1 0.996963504492982 hm5C_site_42648 DeepMRMD:1;iRNA_m5C:0.996963504492982 42649 chr9 140110210 140110210 1 + C T UCEC 140110226 + 140110206 140110246 41 GTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA GTAGTCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCA < 41bp 1 0.129832011715844 1 0.0632002055644989 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110226 chr9:140110210 nonsynonymous SNV 0.931 5 5 hm5C_associated_SNPs_43682 0 0 1 0 2 chromatin 1 0.500231643910947 1 0.999536712178105 hm5C_site_42649 DeepMRMD:1;iRNA_m5C:0.999536712178105 42650 chr1 214794197 214794197 1 + C T UCEC 214794185 + 214794165 214794205 41 TGGGGAACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAA TGGGGAACAAGAGGTGACTCCAAGTCGATCAATTTTGCAAA < 41bp 1 0.315136344664647 1 0.216362833976746 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794185 chr1:214794197 nonsynonymous SNV 0.006 0 33 hm5C_associated_SNPs_43683 0 0 1 0 1 Nucleus 1 0.500353911543553 1 0.999292176912895 hm5C_site_42650 DeepMRMD:1;iRNA_m5C:0.999292176912895 42651 chr1 214794197 214794197 1 + C T UCEC 214794190 + 214794170 214794210 41 AACAAGAGGTGACTCCAAGTCGATCAACTTTGCAAATAGGG AACAAGAGGTGACTCCAAGTCGATCAATTTTGCAAATAGGG < 41bp 1 0.0804237333365041 1 0.247078567743301 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214794190 chr1:214794197 nonsynonymous SNV 0.006 0 28 hm5C_associated_SNPs_43684 0 0 1 0 1 Nucleus 1 0.500231632639044 1 0.999536734721913 hm5C_site_42651 DeepMRMD:1;iRNA_m5C:0.999536734721913 42652 chr19 8503332 8503332 1 + C T UCEC 8503319 + 8503299 8503339 41 TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTCGCCTGAA TACTCCGAGTGGAGAAAGACCAACCAGAAAGTTTGCCTGAA < 41bp 1 0.426386917566668 1 0.121750026941299 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503319 chr19:8503332 nonsynonymous SNV 0.989 2 34 hm5C_associated_SNPs_43685 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42652 DeepMRMD:1;iRNA_m5C:0.999536712157815 42653 chr15 65157702 65157702 1 + G T UCEC 65157697 + 65157677 65157717 41 CCCTCTCAGGCTGAGGGCACCCCAGGAACTCCTCCAAAGGA CCCTCTCAGGCTGAGGGCACCCCAGTAACTCCTCCAAAGGA < 41bp 1 0.214195234169946 1 0.163313508033752 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHO2 ENSG00000241839 CDS Human protein_coding chr15:65157697 chr15:65157702 nonsynonymous SNV 0.003 1 26 hm5C_associated_SNPs_43686 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42653 DeepMRMD:1;iRNA_m5C:0.999536712157815 42654 chr11 61404347 61404347 1 + C T UCEC 61404327 + 61404307 61404347 41 GGTGCTGATGGGCAAGAACGCCATGACGCGCAAGGCCATCC GGTGCTGATGGGCAAGAACGCCATGACGCGCAAGGCCATCT < 41bp 1 0.334391810019495 1 0.181591600179672 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404327 chr11:61404347 . . 0 41 hm5C_associated_SNPs_43687 0 0 0 0 0 unknown 1 0.500231643921031 1 0.999536712157938 hm5C_site_42654 DeepMRMD:1;iRNA_m5C:0.999536712157938 42655 chr2 204081998 204081998 1 + G A UCEC 204082013 + 204081993 204082033 41 TTCTCGAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA TTCTCAAAAATTTTGGGGATCGAGCAAGCGGCTCAGCCAGA < 41bp 1 0.214091683087734 1 0.378469556570053 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control NBEAL1 ENSG00000144426 CDS Human protein_coding chr2:204082013 chr2:204081998 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_43689 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_42655 DeepMRMD:1;iRNA_m5C:0.999536712157814 42656 chr9 135919195 135919195 1 + C A UCEC 135919215 + 135919195 135919235 41 CTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC ATCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCC < 41bp 1 0.0504127556075652 1 0.0276399552822113 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919215 chr9:135919195 nonsynonymous SNV 0.717 0 1 hm5C_associated_SNPs_43690 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_42656 DeepMRMD:1;iRNA_m5C:0.999536712157815 42657 chr2 29159805 29159805 1 + A T UCEC 29159809 + 29159789 29159829 41 TTACAAAGAGGTTACAAGGACATCCTAATAGGTAAGATTAA TTACAAAGAGGTTACATGGACATCCTAATAGGTAAGATTAA < 41bp 1 0.109685681164359 1 0.1131551861763 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR43 ENSG00000163811 CDS Human protein_coding chr2:29159809 chr2:29159805 nonsynonymous SNV 0.959 1 17 hm5C_associated_SNPs_43691 0 0 1 0 2 Ribosome 1 0.500231646701983 1 0.999536706596034 hm5C_site_42657 DeepMRMD:1;iRNA_m5C:0.999536706596034 42658 chr17 79663480 79663480 1 + G A UCEC 79663489 + 79663469 79663509 41 GGAGAAGCTTCGCCGGGCAGCCGAGGAGGCAGAGCGCCAGC GGAGAAGCTTCACCGGGCAGCCGAGGAGGCAGAGCGCCAGC < 41bp 1 0.588888522076325 1 0.74053555727005 experiment 0.82222295584735 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663489 chr17:79663480 nonsynonymous SNV 0.995 3 12 hm5C_associated_SNPs_43692 0 0 1 0 1 Nucleus 1 0.500231643920778 0.5189288854599 0.999536712158443 hm5C_site_42658 DeepMRMD:0.5189288854599;iRNA_m5C:0.999536712158443 42659 chr8 104432656 104432656 1 + C A UCEC 104432667 + 104432647 104432687 41 CCAGAGAAGCTGGCTACTGTCCTTTCTGGGGCGTGTGATGG CCAGAGAAGATGGCTACTGTCCTTTCTGGGGCGTGTGATGG < 41bp 1 0.0910427419804417 1 0.0318083763122559 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104432667 chr8:104432656 nonsynonymous SNV 0.994 3 10 hm5C_associated_SNPs_43693 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42659 DeepMRMD:1;iRNA_m5C:0.999536712157815 42660 chr16 675504 675504 1 + G A UCEC 675485 + 675465 675505 41 TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCGA TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCAA < 41bp 1 0.202222928159193 1 0.114881217479706 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675485 chr16:675504 nonsynonymous SNV 0.942 1 40 hm5C_associated_SNPs_43694 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42660 DeepMRMD:1;iRNA_m5C:0.999536712157815 42661 chr14 102445743 102445743 1 + G A UCEC 102445731 + 102445711 102445751 41 CAGCTCCGGGTCCTTACACTCAGTGAAGACTCGCCCTACGA CAGCTCCGGGTCCTTACACTCAGTGAAGACTCACCCTACGA < 41bp 1 0.21383364348766 1 0.796578407287598 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102445731 chr14:102445743 synonymous SNV . 0 33 hm5C_associated_SNPs_43696 4 0 1 0 2 Cytosol 1 0.500231643921104 0.406843185424804 0.999536712157792 hm5C_site_42661 DeepMRMD:0.406843185424804;iRNA_m5C:0.999536712157792 Spinocerebellar Ataxia, Dominant Spinocerebellar Ataxia, Dominant 42662 chr16 89645276 89645276 1 + G A UCEC 89645265 + 89645245 89645285 41 CTGGGTTACGGCCTCCACAGCCAGCCCAAAAGTGGCTTCTG CTGGGTTACGGCCTCCACAGCCAGCCCAAAAATGGCTTCTG < 41bp 1 0.0792298250754846 1 0.799322068691254 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89645265 chr16:89645276 synonymous SNV . 0 32 hm5C_associated_SNPs_43698 0 0 1 0 1 Nucleus 1 0.500231643664168 0.401355862617492 0.999536712671663 hm5C_site_42662 DeepMRMD:0.401355862617492;iRNA_m5C:0.999536712671663 42663 chr5 5457671 5457671 1 + T C UCEC 5457687 + 5457667 5457707 41 AGGTTTTAGTACAAAGTCATCGTGACGGTGGTAGTACTGAA AGGTCTTAGTACAAAGTCATCGTGACGGTGGTAGTACTGAA < 41bp 1 0.395250898726504 1 0.20800644159317 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ICE1 ENSG00000164151 CDS Human protein_coding chr5:5457687 chr5:5457671 synonymous SNV . 0 5 hm5C_associated_SNPs_43699 0 0 1 0 0 Nucleus 1 0.500231643833809 1 0.999536712332383 hm5C_site_42663 DeepMRMD:1;iRNA_m5C:0.999536712332383 42664 chr8 107752678 107752678 1 + T C UCEC 107752684 + 107752664 107752704 41 CGAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGAT CGAACAATGACAGGCTTAGACACCCCAGTGCTGATGGTGAT < 41bp 1 0.374141124724945 1 0.268074572086334 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXR1 ENSG00000164830 CDS Human protein_coding chr8:107752684 chr8:107752678 synonymous SNV . 0 15 hm5C_associated_SNPs_43700 0 0 0 0 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_42664 DeepMRMD:1;iRNA_m5C:0.999536712157818 42665 chrX 21874931 21874931 1 + G A UCEC 21874912 + 21874892 21874932 41 TAGGCAACGACTTGGAGGACCAGTTGGCCCTCCCGGATAGC TAGGCAACGACTTGGAGGACCAGTTGGCCCTCCCGGATAAC < 41bp 1 0.181541203324578 1 0.125289678573608 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control YY2 ENSG00000230797 CDS Human protein_coding chrX:21874912 chrX:21874931 nonsynonymous SNV 0.000 0 40 hm5C_associated_SNPs_43701 0 0 0 0 0 exosome 1 0.50023164391434 1 0.999536712171319 hm5C_site_42665 DeepMRMD:1;iRNA_m5C:0.999536712171319 42666 chr22 32188025 32188025 1 + A G UCEC 32188034 + 32188014 32188054 41 CTTAGGAGAAGAACTGTAGTCATGAAGTGACAGTGGTCCTG CTTAGGAGAAGGACTGTAGTCATGAAGTGACAGTGGTCCTG < 41bp 1 0.65577080870555 1 0.255634337663651 experiment 0.6884583825889 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32188034 chr22:32188025 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_43702 0 0 1 1 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42666 DeepMRMD:1;iRNA_m5C:0.999536712157815 42667 chr4 3205791 3205791 1 + G T UCEC 3205778 + 3205758 3205798 41 GTTACTTAGTCCCCAGATGTCTGGAGAAGAGGAGGATTCTG GTTACTTAGTCCCCAGATGTCTGGAGAAGAGGATGATTCTG < 41bp 1 0.68659840664348 1 0.91582179069519 experiment 0.626803186713041 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3205778 chr4:3205791 nonsynonymous SNV 0.572 0 34 hm5C_associated_SNPs_43703 0 0 1 0 2 Cytosol 1 0.500231643921726 0.16835641860962 0.999536712156547 hm5C_site_42667 DeepMRMD:0.16835641860962;iRNA_m5C:0.999536712156547 42668 chr3 142741794 142741794 1 + C T UCEC 142741800 + 142741780 142741820 41 TATGATGGAACATACGCTTCCCCCACCTCCATCCGGACTGC TATGATGGAACATATGCTTCCCCCACCTCCATCCGGACTGC < 41bp 1 0.556946868226424 1 0.0591742694377899 experiment 0.886106263547152 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142741800 chr3:142741794 nonsynonymous SNV 0.994 3 15 hm5C_associated_SNPs_43704 0 0 1 0 1 Cytosol 1 0.50023164391644 1 0.99953671216712 hm5C_site_42668 DeepMRMD:1;iRNA_m5C:0.99953671216712 42669 chr20 35862439 35862439 1 + C T UCEC 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCGGATTGGTGTCAATGTCTC < 41bp 1 0.518615637742447 1 0.323157429695129 experiment 0.962768724515105 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862439 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_43705 0 0 1 0 2 Ribosome 1 0.500231643921025 1 0.999536712157949 hm5C_site_42669 DeepMRMD:1;iRNA_m5C:0.999536712157949 42670 chr19 56172454 56172454 1 + G A UCEC 56172435 + 56172415 56172455 41 ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGG ATTCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACAG < 41bp 1 0.628243054582334 1 0.572168350219727 experiment 0.743513890835332 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172435 chr19:56172454 nonsynonymous SNV 0.984 0 40 hm5C_associated_SNPs_43706 0 0 1 0 1 Ribosome 1 0.500231643921092 0.855663299560546 0.999536712157815 hm5C_site_42670 DeepMRMD:0.855663299560546;iRNA_m5C:0.999536712157815 42671 chr19 56172454 56172454 1 + G A UCEC 56172437 + 56172417 56172457 41 TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTC TCCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACAGTC < 41bp 1 0.166328606095243 1 0.121466904878616 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172437 chr19:56172454 nonsynonymous SNV 0.984 0 38 hm5C_associated_SNPs_43707 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42671 DeepMRMD:1;iRNA_m5C:0.999536712157815 42672 chr19 56172454 56172454 1 + G A UCEC 56172438 + 56172418 56172458 41 CCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACGGTCT CCAGCCACTGCTCTTCTCCCCACCATGACCCCTGACAGTCT < 41bp 1 0.680514245775211 1 0.531381905078888 experiment 0.638971508449578 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172438 chr19:56172454 nonsynonymous SNV 0.984 0 37 hm5C_associated_SNPs_43708 0 0 1 0 1 Ribosome 1 0.500231574096281 0.937236189842224 0.999536851807437 hm5C_site_42672 DeepMRMD:0.937236189842224;iRNA_m5C:0.999536851807437 42673 chr1 46739826 46739826 1 + C A UCEC 46739819 + 46739799 46739839 41 TCCCCCTTCAGGTACTTATACGTCCGCCTGGATGGCACGAT TCCCCCTTCAGGTACTTATACGTCCGCATGGATGGCACGAT < 41bp 1 0.153945517255107 1 0.0860338509082794 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD54L ENSG00000085999 CDS Human protein_coding chr1:46739819 chr1:46739826 nonsynonymous SNV 0.962 4 28 hm5C_associated_SNPs_43709 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42673 DeepMRMD:1;iRNA_m5C:0.999536712157815 42674 chr19 8551095 8551095 1 + G A UCEC 8551091 + 8551071 8551111 41 AACAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCGGCCCT AACAGCCTCGAGCGCATGGGCCCTACCATGGGCCCGGCCCT < 41bp 1 0.497002658977355 1 0.0364145040512085 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551091 chr19:8551095 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_43711 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42674 DeepMRMD:1;iRNA_m5C:0.999536712157815 42675 chr19 8551095 8551095 1 + G A UCEC 8551092 + 8551072 8551112 41 ACAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCGGCCCTG ACAGCCTCGAGCGCATGGGCCCTACCATGGGCCCGGCCCTG < 41bp 1 0.0932104464907176 1 0.0414590835571289 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551092 chr19:8551095 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_43712 0 0 1 0 0 Nucleus 1 0.500231643978737 1 0.999536712042526 hm5C_site_42675 DeepMRMD:1;iRNA_m5C:0.999536712042526 42676 chr19 8551095 8551095 1 + G A UCEC 8551093 + 8551073 8551113 41 CAGCCTCGAGCGCATGGGCCCTGCCATGGGCCCGGCCCTGG CAGCCTCGAGCGCATGGGCCCTACCATGGGCCCGGCCCTGG < 41bp 1 0.551744726209052 1 0.038785994052887 experiment 0.896510547581895 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551093 chr19:8551095 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_43713 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42676 DeepMRMD:1;iRNA_m5C:0.999536712157815 42677 chr19 8551095 8551095 1 + G A UCEC 8551103 + 8551083 8551123 41 CGCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGGCAT CGCATGGGCCCTACCATGGGCCCGGCCCTGGGCGCTGGCAT < 41bp 1 0.527408954460802 1 0.0865453481674194 experiment 0.945182091078396 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551103 chr19:8551095 nonsynonymous SNV 0.995 1 13 hm5C_associated_SNPs_43714 0 0 1 0 0 Nucleus 1 0.500231659460038 1 0.999536681079925 hm5C_site_42677 DeepMRMD:1;iRNA_m5C:0.999536681079925 42678 chr19 8551095 8551095 1 + G A UCEC 8551104 + 8551084 8551124 41 GCATGGGCCCTGCCATGGGCCCGGCCCTGGGCGCTGGCATT GCATGGGCCCTACCATGGGCCCGGCCCTGGGCGCTGGCATT < 41bp 1 0.447903652890367 1 0.109416902065277 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8551104 chr19:8551095 nonsynonymous SNV 0.995 1 12 hm5C_associated_SNPs_43715 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42678 DeepMRMD:1;iRNA_m5C:0.999536712157815 42679 chr9 127055283 127055283 1 + A T UCEC 127055289 + 127055269 127055309 41 AGCAGAGCCTGCCAAGGCCTCGAGGTGAGAGCAAGATCATT AGCAGAGCCTGCCATGGCCTCGAGGTGAGAGCAAGATCATT < 41bp 1 0.617157948683065 1 0.938111186027527 experiment 0.765684102633871 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NEK6 ENSG00000119408 CDS Human protein_coding chr9:127055289 chr9:127055283 nonsynonymous SNV 0.410 1 15 hm5C_associated_SNPs_43717 0 0 0 0 1 Cytosol 1 0.500231657170127 0.123777627944946 0.999536685659746 hm5C_site_42679 DeepMRMD:0.123777627944946;iRNA_m5C:0.999536685659746 42680 chr2 152273370 152273370 1 + C T UCEC 152273359 + 152273339 152273379 41 TCATTAGAAATACTGTTTAACAAAGGAGAGACGCATTCTGC TCATTAGAAATACTGTTTAACAAAGGAGAGATGCATTCTGC < 41bp 1 0.321594130655302 1 0.714677691459656 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RIF1 ENSG00000080345 CDS Human protein_coding chr2:152273359 chr2:152273370 nonsynonymous SNV 0.861 0 32 hm5C_associated_SNPs_43719 0 0 1 0 2 Nucleus 1 0.5002310228112 0.570644617080688 0.9995379543776 hm5C_site_42680 DeepMRMD:0.570644617080688;iRNA_m5C:0.9995379543776 42681 chr12 31244689 31244689 1 + G A UCEC 31244687 + 31244667 31244707 41 CTATCAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGG CTATCAGATGCTGCTGCATGCGACCACTCGGCAGGCCGCGG < 41bp 1 0.414623927991913 1 0.145087242126465 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244687 chr12:31244689 nonsynonymous SNV 0.206 1 23 hm5C_associated_SNPs_43721 0 0 1 0 1 Cytosol 1 0.50023164392362 1 0.999536712152761 hm5C_site_42681 DeepMRMD:1;iRNA_m5C:0.999536712152761 42682 chr12 31244689 31244689 1 + G A UCEC 31244691 + 31244671 31244711 41 CAGATGCTGCTGCATGCGGCCACTCGGCAGGCCGCGGGCAT CAGATGCTGCTGCATGCGACCACTCGGCAGGCCGCGGGCAT < 41bp 1 0.295690243568437 1 0.0660594999790192 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31244691 chr12:31244689 nonsynonymous SNV 0.206 1 19 hm5C_associated_SNPs_43722 0 0 1 0 1 Cytosol 1 0.500231644014106 1 0.999536711971788 hm5C_site_42682 DeepMRMD:1;iRNA_m5C:0.999536711971788 42683 chr2 204103735 204103735 1 + G A UCEC 204103736 + 204103716 204103756 41 AATTGGGCCAGGCTGAGGCGCTGCTGCTGGAGCGGCCGATC AATTGGGCCAGGCTGAGGCACTGCTGCTGGAGCGGCCGATC < 41bp 1 0.598366479591063 1 0.354208886623383 experiment 0.803267040817875 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CYP20A1 ENSG00000119004 UTR5 Human protein_coding chr2:204103736 chr2:204103735 . . 0 20 hm5C_associated_SNPs_43724 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_42683 DeepMRMD:1;iRNA_m5C:0.999536712157815 42684 chr2 204103735 204103735 1 + G A UCEC 204103739 + 204103719 204103759 41 TGGGCCAGGCTGAGGCGCTGCTGCTGGAGCGGCCGATCCGA TGGGCCAGGCTGAGGCACTGCTGCTGGAGCGGCCGATCCGA < 41bp 1 0.622498104002464 1 0.258098840713501 experiment 0.755003791995072 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP20A1 ENSG00000119004 UTR5 Human protein_coding chr2:204103739 chr2:204103735 . . 0 17 hm5C_associated_SNPs_43725 0 0 1 0 0 Nucleus 1 0.500231643912705 1 0.999536712174591 hm5C_site_42684 DeepMRMD:1;iRNA_m5C:0.999536712174591 42685 chr15 64418415 64418415 1 + C T UCEC 64418395 + 64418375 64418415 41 AGAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTC AGAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTT < 41bp 1 0.0886578915287154 1 0.252354979515076 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418395 chr15:64418415 synonymous SNV . 0 41 hm5C_associated_SNPs_43726 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42685 DeepMRMD:1;iRNA_m5C:0.999536712157815 42686 chr15 64418415 64418415 1 + C T UCEC 64418396 + 64418376 64418416 41 GAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCA GAATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTTA < 41bp 1 0.216041904667792 1 0.33225804567337 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418396 chr15:64418415 synonymous SNV . 0 40 hm5C_associated_SNPs_43727 0 0 1 0 1 Ribosome 1 0.500231643919896 1 0.999536712160207 hm5C_site_42686 DeepMRMD:1;iRNA_m5C:0.999536712160207 42687 chr15 64418415 64418415 1 + C T UCEC 64418398 + 64418378 64418418 41 ATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTCATA ATGGCTTCATTGTCCCTCCGCCCCCGGAGAAGAGCCTTATA < 41bp 1 0.109249497048569 1 0.0939939618110657 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64418398 chr15:64418415 synonymous SNV . 0 38 hm5C_associated_SNPs_43728 0 0 1 0 1 Ribosome 1 0.500231643920531 1 0.999536712158939 hm5C_site_42687 DeepMRMD:1;iRNA_m5C:0.999536712158939 42688 chr2 241514979 241514979 1 + C G UCEC 241514997 + 241514977 241515017 41 TCCTGAGCTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC TCGTGAGCTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC < 41bp 1 0.592442400108066 1 0.2728670835495 experiment 0.815115199783869 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514997 chr2:241514979 nonsynonymous SNV 0.999 4 3 hm5C_associated_SNPs_43729 0 0 1 0 1 chromatin 1 0.500231643921091 1 0.999536712157818 hm5C_site_42688 DeepMRMD:1;iRNA_m5C:0.999536712157818 42689 chr7 135291561 135291561 1 + C G UCEC 135291549 + 135291529 135291569 41 TTCGTCATGAAACAAGAATCCACATCTTGAATCTTCTCATT TTCGTCATGAAACAAGAATCCACATCTTGAATGTTCTCATT < 41bp 1 0.212434232840001 1 0.0828733444213867 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135291549 chr7:135291561 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_43730 0 0 1 0 1 Cytosol 1 0.500231642600173 1 0.999536714799653 hm5C_site_42689 DeepMRMD:1;iRNA_m5C:0.999536714799653 42690 chrX 105921450 105921450 1 + T A UCEC 105921458 + 105921438 105921478 41 AAAGTGGAAGTCTATTTGCACAAGATTTATAGTCCAGAGAA AAAGTGGAAGTCAATTTGCACAAGATTTATAGTCCAGAGAA < 41bp 1 0.670501823015098 1 0.297337353229523 experiment 0.658996353969804 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105921458 chrX:105921450 nonsynonymous SNV 0.872 2 13 hm5C_associated_SNPs_43731 0 0 1 0 1 nucleus 1 0.500231643905565 1 0.999536712188869 hm5C_site_42690 DeepMRMD:1;iRNA_m5C:0.999536712188869 42691 chr7 73922433 73922433 1 + G A UCEC 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGCGCTATGACGTCCCCACCAACGGCTGCGGACC < 41bp 1 0.50806881273061 1 0.219767212867737 experiment 0.983862374538779 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922433 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_43732 0 0 1 0 1 Nucleus 1 0.500231909303872 1 0.999536181392256 hm5C_site_42691 DeepMRMD:1;iRNA_m5C:0.999536181392256 42692 chrX 56591606 56591606 1 + C A UCEC 56591612 + 56591592 56591632 41 AGCTCCCAGCCTTCCTGCAGCAGATGCAGAATCCAGACACA AGCTCCCAGCCTTCATGCAGCAGATGCAGAATCCAGACACA < 41bp 1 0.392138560864126 1 0.197277188301086 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56591612 chrX:56591606 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_43733 0 0 0 0 0 nucleus 1 0.500232585598579 1 0.999534828802843 hm5C_site_42692 DeepMRMD:1;iRNA_m5C:0.999534828802843 42693 chr15 40708534 40708534 1 + G A UCEC 40708548 + 40708528 40708568 41 ACACAGGTAGCCCTGGACGGCATTCAGTGTTTTGGTGAGTG ACACAGATAGCCCTGGACGGCATTCAGTGTTTTGGTGAGTG < 41bp 1 0.0476501229812523 1 0.0348435640335083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IVD ENSG00000128928 CDS Human protein_coding chr15:40708548 chr15:40708534 nonsynonymous SNV 0.980 2 7 hm5C_associated_SNPs_43734 0 0 1 0 2 Cytosol 1 0.500231643920545 1 0.99953671215891 hm5C_site_42693 DeepMRMD:1;iRNA_m5C:0.99953671215891 42694 chr7 102944355 102944355 1 + G A UCEC 102944354 + 102944334 102944374 41 AAGCAGAGATTGAACGTGAGCGTGGAGTAATCCTTAGAGAG AAGCAGAGATTGAACGTGAGCATGGAGTAATCCTTAGAGAG < 41bp 1 0.537695064561551 1 0.473426014184952 experiment 0.924609870876898 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PMPCB ENSG00000105819 CDS Human protein_coding chr7:102944354 chr7:102944355 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_43735 0 0 1 0 1 Ribosome 1 0.500231643921117 1 0.999536712157765 hm5C_site_42694 DeepMRMD:1;iRNA_m5C:0.999536712157765 42695 chr3 49568981 49568981 1 + C T UCEC 49568966 + 49568946 49568986 41 CCCATCCAGGATCGTGCCAACCCCCACATCTCCAGCCATTG CCCATCCAGGATCGTGCCAACCCCCACATCTCCAGTCATTG < 41bp 1 0.120519302444657 1 0.0245395004749298 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DAG1 ENSG00000173402 CDS Human protein_coding chr3:49568966 chr3:49568981 nonsynonymous SNV 0.998 2 36 hm5C_associated_SNPs_43736 0 0 1 0 0 Nucleus 1 0.50023164392109 1 0.999536712157821 hm5C_site_42695 DeepMRMD:1;iRNA_m5C:0.999536712157821 Pulmonary function 42696 chr6 145103184 145103184 1 + A G UCEC 145103189 + 145103169 145103209 41 ATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAACGTT ATGATGGACTTGAGCGAATGCATAAGGACCTGGTCAACGTT < 41bp 1 0.166390792472169 1 0.385030627250671 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145103189 chr6:145103184 nonsynonymous SNV 0.994 0 16 hm5C_associated_SNPs_43737 0 0 1 0 1 Nucleus 1 0.500231643921471 1 0.999536712157058 hm5C_site_42696 DeepMRMD:1;iRNA_m5C:0.999536712157058 42697 chr9 33799164 33799164 1 + G A UCEC 33799160 + 33799140 33799180 41 GTGGACTGGATTAAGGACACCATCGCTGCCAACAGCTAAAG GTGGACTGGATTAAGGACACCATCACTGCCAACAGCTAAAG < 41bp 1 0.383803156699436 1 0.0476764142513275 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRSS3 ENSG00000010438 CDS Human protein_coding chr9:33799160 chr9:33799164 nonsynonymous SNV 0.173 1 25 hm5C_associated_SNPs_43739 0 0 0 0 0 Ribosome 1 0.500231643890393 1 0.999536712219213 hm5C_site_42697 DeepMRMD:1;iRNA_m5C:0.999536712219213 42698 chr1 200817246 200817246 1 + G A UCEC 200817245 + 200817225 200817265 41 CTCCAAACCGAGGAATCACTCGTTCTATTAGTAATGAAGGA CTCCAAACCGAGGAATCACTCATTCTATTAGTAATGAAGGA < 41bp 1 0.0670831162982652 1 0.481988459825516 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200817245 chr1:200817246 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_43740 0 0 1 0 1 chromatin 1 0.500231643921087 1 0.999536712157827 hm5C_site_42698 DeepMRMD:1;iRNA_m5C:0.999536712157827 42699 chr5 159849879 159849879 1 + G A UCEC 159849863 + 159849843 159849883 41 GTCTGTAAAGACCAAGGGACCCCTCAAACAAAAACAGCCAA GTCTGTAAAGACCAAGGGACCCCTCAAACAAAAACAACCAA < 41bp 1 0.133059351422654 1 0.208641350269318 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PTTG1 ENSG00000164611 CDS Human protein_coding chr5:159849863 chr5:159849879 synonymous SNV . 0 37 hm5C_associated_SNPs_43741 0 0 1 0 1 Ribosome 1 0.500231643797949 1 0.999536712404101 hm5C_site_42699 DeepMRMD:1;iRNA_m5C:0.999536712404101 42700 chr7 129950656 129950656 1 + G A UCEC 129950671 + 129950651 129950691 41 GCTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG GCTCCAAAGTGTACCATGGACCCCACGCCAATTCGGAAGTG < 41bp 1 0.578595109239044 1 0.0636526644229889 experiment 0.842809781521911 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950671 chr7:129950656 nonsynonymous SNV 0.994 4 6 hm5C_associated_SNPs_43742 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643930314 1 0.999536712139372 hm5C_site_42700 DeepMRMD:1;iRNA_m5C:0.999536712139372 42701 chr7 129950656 129950656 1 + G A UCEC 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCAAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG < 41bp 1 0.0930502358034615 1 0.0731083750724792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950656 nonsynonymous SNV 0.994 4 5 hm5C_associated_SNPs_43743 0 0 0 0 1 Endoplasmic reticulum 1 0.500233633969446 1 0.999532732061107 hm5C_site_42701 DeepMRMD:1;iRNA_m5C:0.999532732061107 42702 chr1 43900098 43900098 1 + G A UCEC 43900109 + 43900089 43900129 41 CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGAGGCGAGTT CTGAGTGTCACCACCTGCAGCAGCTCCTGGTGAGGCGAGTT < 41bp 1 0.0839352130533388 1 0.229417055845261 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43900109 chr1:43900098 nonsynonymous SNV 0.998 0 10 hm5C_associated_SNPs_43745 0 0 1 0 2 Cytosol 1 0.50023164392067 1 0.99953671215866 hm5C_site_42702 DeepMRMD:1;iRNA_m5C:0.99953671215866 42703 chr18 641405 641405 1 + G A UCEC 641423 + 641403 641443 41 TGGCCAGATTCTCCAGATGACCCGGAAGCACTTGGAGGACA TGACCAGATTCTCCAGATGACCCGGAAGCACTTGGAGGACA < 41bp 1 0.658466068753142 1 0.0620328485965729 experiment 0.683067862493717 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641423 chr18:641405 nonsynonymous SNV 0.009 0 3 hm5C_associated_SNPs_43746 0 0 0 0 1 cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_42703 DeepMRMD:1;iRNA_m5C:0.999536712157814 42704 chr8 67341394 67341394 1 + C T UCEC 67341375 + 67341355 67341395 41 CGAGCCGGAGCCATGGAGGGCCAGAGCGTGGAGGAGCTGCT CGAGCCGGAGCCATGGAGGGCCAGAGCGTGGAGGAGCTGTT < 41bp 1 0.577555779781077 1 0.423372179269791 experiment 0.844888440437846 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RRS1 ENSG00000179041 CDS Human protein_coding chr8:67341375 chr8:67341394 nonsynonymous SNV 0.966 2 40 hm5C_associated_SNPs_43747 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42704 DeepMRMD:1;iRNA_m5C:0.999536712157815 42705 chr17 79418799 79418799 1 + C T UCEC 79418808 + 79418788 79418828 41 CACTGCCCCAGCGCAGCCGCCCACAGCCAACCCCTGCAGCG CACTGCCCCAGTGCAGCCGCCCACAGCCAACCCCTGCAGCG < 41bp 1 0.141348663575291 1 0.106047123670578 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BAHCC1 ENSG00000171282 CDS Human other chr17:79418808 chr17:79418799 nonsynonymous SNV 0.000 0 12 hm5C_associated_SNPs_43748 0 0 1 0 1 chromatin 1 0.500231694580806 1 0.999536610838388 hm5C_site_42705 DeepMRMD:1;iRNA_m5C:0.999536610838388 42706 chr16 72134483 72134483 1 + T C UCEC 72134463 + 72134443 72134483 41 GTGCACAATCTGGTGCCTCCCTTTCTGGATGGGCGCATTGT GTGCACAATCTGGTGCCTCCCTTTCTGGATGGGCGCATTGC < 41bp 1 0.104318185440074 1 0.0281984806060791 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72134463 chr16:72134483 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_43750 0 0 1 0 0 Cytosol 1 0.500228653564659 1 0.999542692870682 hm5C_site_42706 DeepMRMD:1;iRNA_m5C:0.999542692870682 42707 chr2 203421066 203421066 1 + G A UCEC 203421065 + 203421045 203421085 41 GTCTTGTGGACAGGAGGGAACGGCCACTAGAAGGTGGCCGA GTCTTGTGGACAGGAGGGAACAGCCACTAGAAGGTGGCCGA < 41bp 1 0.274915509204425 1 0.523216843605042 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BMPR2 ENSG00000204217 CDS Human protein_coding chr2:203421065 chr2:203421066 nonsynonymous SNV 0.985 4 22 hm5C_associated_SNPs_43751 0 0 1 0 0 Ribosome 1 0.500231643852227 0.953566312789916 0.999536712295545 hm5C_site_42707 DeepMRMD:0.953566312789916;iRNA_m5C:0.999536712295545 Amyotrophic Lateral Sclerosis (ALS) 42708 chr16 29912737 29912737 1 + C T UCEC 29912748 + 29912728 29912768 41 GTGAGCCGGCGGCTTCGGGCCTACGCAAGGCGCTACTCCTG GTGAGCCGGTGGCTTCGGGCCTACGCAAGGCGCTACTCCTG < 41bp 1 0.64084348478693 1 0.524823606014252 experiment 0.71831303042614 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASPHD1 ENSG00000174939 CDS Human protein_coding chr16:29912748 chr16:29912737 nonsynonymous SNV 0.942 2 10 hm5C_associated_SNPs_43753 0 0 1 0 0 nucleus 1 0.500231643921092 0.950352787971496 0.999536712157815 hm5C_site_42708 DeepMRMD:0.950352787971496;iRNA_m5C:0.999536712157815 42709 chr19 54965794 54965794 1 + T C UCEC 54965774 + 54965754 54965794 41 CACAGCACAGCCAGGCGGGGCCCGCCACGGGCCAGGCCTAT CACAGCACAGCCAGGCGGGGCCCGCCACGGGCCAGGCCTAC < 41bp 1 0.0840899099667587 1 0.4097980260849 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54965774 chr19:54965794 synonymous SNV . 0 41 hm5C_associated_SNPs_43754 0 0 1 0 0 chromatin 1 0.500231974775902 1 0.999536050448197 hm5C_site_42709 DeepMRMD:1;iRNA_m5C:0.999536050448197 42710 chr19 54965794 54965794 1 + T C UCEC 54965775 + 54965755 54965795 41 ACAGCACAGCCAGGCGGGGCCCGCCACGGGCCAGGCCTATG ACAGCACAGCCAGGCGGGGCCCGCCACGGGCCAGGCCTACG < 41bp 1 0.107834825633591 1 0.201607346534729 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54965775 chr19:54965794 synonymous SNV . 0 40 hm5C_associated_SNPs_43755 0 0 1 0 0 chromatin 1 0.500231594147334 1 0.999536811705331 hm5C_site_42710 DeepMRMD:1;iRNA_m5C:0.999536811705331 42711 chr15 63073421 63073421 1 + C T UCEC 63073407 + 63073387 63073427 41 CAGACGACTGTGGTTAAATACTCCAAAGCCATTGCGGTGAC CAGACGACTGTGGTTAAATACTCCAAAGCCATTGTGGTGAC < 41bp 1 0.648716559812036 1 0.975176811218262 experiment 0.702566880375927 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control TLN2 ENSG00000171914 CDS Human protein_coding chr15:63073407 chr15:63073421 nonsynonymous SNV 0.996 2 35 hm5C_associated_SNPs_43756 0 0 0 0 2 Nucleus 1 0.50023199837561 0.0496463775634759 0.99953600324878 hm5C_site_42711 DeepMRMD:0.0496463775634759;iRNA_m5C:0.99953600324878 42712 chr19 45490675 45490675 1 + G A UCEC 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCAG < 41bp 1 0.696391079982861 1 0.784320950508118 experiment 0.607217840034277 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490675 synonymous SNV . 0 40 hm5C_associated_SNPs_43757 0 0 1 0 1 Cytosol 1 0.500231643920963 0.431358098983764 0.999536712158074 hm5C_site_42712 DeepMRMD:0.431358098983764;iRNA_m5C:0.999536712158074 42713 chr12 57597273 57597273 1 + C T UCEC 57597276 + 57597256 57597296 41 GACGCCGACTGCATGGACGGCAGCGACGAGGAGGCCTGCGG GACGCCGACTGCATGGATGGCAGCGACGAGGAGGCCTGCGG < 41bp 1 0.287824684299148 1 0.232824862003326 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57597276 chr12:57597273 synonymous SNV . 0 18 hm5C_associated_SNPs_43758 0 0 1 0 1 Exosome 1 0.500231643921145 1 0.99953671215771 hm5C_site_42713 DeepMRMD:1;iRNA_m5C:0.99953671215771 42714 chr4 3418757 3418757 1 + A G UCEC 3418764 + 3418744 3418784 41 GCAGCAGGTCCCCAGCAGCCCGGCTTCCAAGCACAGCCTCG GCAGCAGGTCCCCGGCAGCCCGGCTTCCAAGCACAGCCTCG < 41bp 1 0.644062961024898 1 0.402678996324539 experiment 0.711874077950203 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RGS12 ENSG00000159788 CDS Human protein_coding chr4:3418764 chr4:3418757 nonsynonymous SNV 0.957 2 14 hm5C_associated_SNPs_43759 0 0 0 0 1 Nucleus 1 0.500231643905756 1 0.999536712188489 hm5C_site_42714 DeepMRMD:1;iRNA_m5C:0.999536712188489 42715 chr2 190531727 190531727 1 + T C UCEC 190531711 + 190531691 190531731 41 ACATGAAGGAAGTAATTCAGCAGTTCATTGATGTCCTGAGT ACATGAAGGAAGTAATTCAGCAGTTCATTGATGTCCCGAGT < 41bp 1 0.439837885735539 1 0.322365462779999 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ASNSD1 ENSG00000138381 CDS Human protein_coding chr2:190531711 chr2:190531727 nonsynonymous SNV 0.702 4 37 hm5C_associated_SNPs_43760 0 0 1 0 0 chromatin 1 0.500669084984327 1 0.998661830031347 hm5C_site_42715 DeepMRMD:1;iRNA_m5C:0.998661830031347 42716 chr1 11897081 11897081 1 + G A UCEC 11897086 + 11897066 11897106 41 TCCTCACCCGGGCTGGCGAGCAGCGCAAACGGAGCCAGTCC TCCTCACCCGGGCTGACGAGCAGCGCAAACGGAGCCAGTCC < 41bp 1 0.698412885883068 1 0.893293023109436 experiment 0.603174228233864 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11897086 chr1:11897081 nonsynonymous SNV 0.191 2 16 hm5C_associated_SNPs_43761 0 0 1 0 1 Endoplasmic reticulum 1 0.500231647680881 0.213413953781128 0.999536704638237 hm5C_site_42716 DeepMRMD:0.213413953781128;iRNA_m5C:0.999536704638237 42717 chr17 21319357 21319357 1 + C G UCEC 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGGCGCGGG < 41bp 1 0.621090660617677 1 0.472696155309677 experiment 0.757818678764646 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319357 nonsynonymous SNV 0.974 2 35 hm5C_associated_SNPs_43762 0 0 0 0 0 unknown 1 0.500231643921556 1 0.999536712156887 hm5C_site_42717 DeepMRMD:1;iRNA_m5C:0.999536712156887 42718 chr15 74325024 74325024 1 + G A UCEC 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACACC < 41bp 1 0.293147147716074 1 0.0441511869430542 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325024 nonsynonymous SNV 0.018 2 39 hm5C_associated_SNPs_43763 0 0 1 0 2 Cytosol 1 0.500231643921095 1 0.999536712157809 hm5C_site_42718 DeepMRMD:1;iRNA_m5C:0.999536712157809 42719 chr17 33310223 33310223 1 + C T UCEC 33310210 + 33310190 33310230 41 GTTCTATCATTCCAGGGAAGCCATCTAAGATCACGTGCCAC GTTCTATCATTCCAGGGAAGCCATCTAAGATCATGTGCCAC < 41bp 1 0.0407370128662367 1 0.176616847515106 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33310210 chr17:33310223 nonsynonymous SNV 0.995 1 34 hm5C_associated_SNPs_43764 0 0 1 0 0 Cytosol 1 0.500231643921111 1 0.999536712157777 hm5C_site_42719 DeepMRMD:1;iRNA_m5C:0.999536712157777 42720 chr6 30886618 30886618 1 + G A UCEC 30886601 + 30886581 30886621 41 AGTGTTTAAATGTTTATCTTCAGATGCAGAGGTTGTGGTAG AGTGTTTAAATGTTTATCTTCAGATGCAGAGGTTGTGATAG < 41bp 1 0.170712465068971 1 0.38204824924469 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VARS2 ENSG00000137411 CDS Human protein_coding chr6:30886601 chr6:30886618 nonsynonymous SNV 0.992 3 38 hm5C_associated_SNPs_43765 0 0 1 0 2 Ribosome 1 0.500231643759788 1 0.999536712480424 hm5C_site_42720 DeepMRMD:1;iRNA_m5C:0.999536712480424 42721 chr12 112229176 112229176 1 + G A UCEC 112229156 + 112229136 112229176 41 CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTG CATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTA < 41bp 1 0.290927939266155 1 0.169102966785431 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229156 chr12:112229176 nonsynonymous SNV 0.619 1 41 hm5C_associated_SNPs_43766 0 0 1 0 2 chromatin 1 0.500231643920932 1 0.999536712158136 hm5C_site_42721 DeepMRMD:1;iRNA_m5C:0.999536712158136 42722 chr12 112229176 112229176 1 + G A UCEC 112229168 + 112229148 112229188 41 ATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGG ATTTGGCCCCACGGCTGGGGCCGCCATTACCTCCCATGAGG < 41bp 1 0.168718030752001 1 0.135394364595413 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112229168 chr12:112229176 nonsynonymous SNV 0.619 1 29 hm5C_associated_SNPs_43768 0 0 1 0 2 chromatin 1 0.500231643921057 1 0.999536712157885 hm5C_site_42722 DeepMRMD:1;iRNA_m5C:0.999536712157885 42723 chr12 31247735 31247735 1 + C T UCEC 31247744 + 31247724 31247764 41 CAGAGCCAGATCGACAACATCAACCTGTTCAAGGTAGAGGT CAGAGCCAGATTGACAACATCAACCTGTTCAAGGTAGAGGT < 41bp 1 0.151322648060891 1 0.059501439332962 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX11 ENSG00000013573 CDS Human protein_coding chr12:31247744 chr12:31247735 synonymous SNV . 0 12 hm5C_associated_SNPs_43770 0 0 0 1 2 Cytosol 1 0.500231643818846 1 0.999536712362307 hm5C_site_42723 DeepMRMD:1;iRNA_m5C:0.999536712362307 42724 chr1 104115864 104115864 1 + C A UCEC 104115875 + 104115855 104115895 41 TATCGAGAACTACAATGATGCTACTCAGGTAAATTTTTTTA TATCGAGAAATACAATGATGCTACTCAGGTAAATTTTTTTA < 41bp 1 0.239586772324764 1 0.0745550692081451 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115875 chr1:104115864 nonsynonymous SNV 0.328 3 10 hm5C_associated_SNPs_43771 0 0 0 0 1 exosome 1 0.500231643932734 1 0.999536712134532 hm5C_site_42724 DeepMRMD:1;iRNA_m5C:0.999536712134532 42725 chr4 79440607 79440607 1 + C A UCEC 79440588 + 79440568 79440608 41 GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCT GGCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTAT < 41bp 1 0.184580154072491 1 0.607966721057892 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440588 chr4:79440607 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_43772 0 0 1 0 1 Nucleus 1 0.500231555680303 0.784066557884216 0.999536888639394 hm5C_site_42725 DeepMRMD:0.784066557884216;iRNA_m5C:0.999536888639394 42726 chr4 79440607 79440607 1 + C A UCEC 79440589 + 79440569 79440609 41 GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTCTT GCCTCCTTGGAGCACCACACCGAGATGGAGTTTTCTTTATT < 41bp 1 0.396182656062802 1 0.449177175760269 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79440589 chr4:79440607 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_43773 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157811 hm5C_site_42726 DeepMRMD:1;iRNA_m5C:0.999536712157811 42727 chr8 59347023 59347023 1 + G T UCEC 59347026 + 59347006 59347046 41 AATTGAGACCTTACAATGAACCAACAAATGCTCAATTTCTG AATTGAGACCTTACAATTAACCAACAAATGCTCAATTTCTG < 41bp 1 0.0980995752624195 1 0.0924267768859863 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBXN2B ENSG00000215114 CDS Human protein_coding chr8:59347026 chr8:59347023 stopgain 0.997 0 18 hm5C_associated_SNPs_43774 0 0 0 0 1 Cytosol 1 0.500232437824732 1 0.999535124350537 hm5C_site_42727 DeepMRMD:1;iRNA_m5C:0.999535124350537 42728 chr7 94293228 94293228 1 + C T UCEC 94293216 + 94293196 94293236 41 GATTTCTCAGTTGATCGTGTCCGTGTCTGCTTCGTGACAAG GATTTCTCAGTTGATCGTGTCCGTGTCTGCTTTGTGACAAG < 41bp 1 0.188592436209992 1 0.0424976646900177 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PEG10 ENSG00000242265 CDS Human protein_coding chr7:94293216 chr7:94293228 synonymous SNV . 0 33 hm5C_associated_SNPs_43775 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164724979 1 0.999536705500421 hm5C_site_42728 DeepMRMD:1;iRNA_m5C:0.999536705500421 42729 chrX 55029468 55029468 1 + G A UCEC 55029466 + 55029446 55029486 41 CCATGCGGACCCTGGGAGGCCTGAGCGGCTAGTCTTTAAGA CCATGCGGACCCTGGGAGGCCTAAGCGGCTAGTCTTTAAGA < 41bp 1 0.397271195959937 1 0.403611570596695 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control APEX2 ENSG00000169188 CDS Human protein_coding chrX:55029466 chrX:55029468 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_43776 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42729 DeepMRMD:1;iRNA_m5C:0.999536712157815 42730 chr11 61725743 61725743 1 + G C UCEC 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCACTT < 41bp 1 0.252999790018092 1 0.191117525100708 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725743 nonsynonymous SNV 0.998 5 39 hm5C_associated_SNPs_43777 0 0 0 1 1 chromatin 1 0.500231644374934 1 0.999536711250131 hm5C_site_42730 DeepMRMD:1;iRNA_m5C:0.999536711250131 42731 chrX 70516832 70516832 1 + G A UCEC 70516812 + 70516792 70516832 41 CAGCAGCAGGACCAAGTGGACCGCAACATCAAGGAGGCTCG CAGCAGCAGGACCAAGTGGACCGCAACATCAAGGAGGCTCA < 41bp 1 0.577603995619818 1 0.315210461616516 experiment 0.844792008760364 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516812 chrX:70516832 nonsynonymous SNV 1.000 2 41 hm5C_associated_SNPs_43779 0 0 1 0 0 Nucleus 1 0.500231643936809 1 0.999536712126383 hm5C_site_42731 DeepMRMD:1;iRNA_m5C:0.999536712126383 42732 chrX 70516832 70516832 1 + G A UCEC 70516829 + 70516809 70516849 41 GGACCGCAACATCAAGGAGGCTCGTGAGAAGCTGGAGATGG GGACCGCAACATCAAGGAGGCTCATGAGAAGCTGGAGATGG < 41bp 1 0.323564093680206 1 0.0420860052108765 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70516829 chrX:70516832 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_43781 0 0 1 0 0 Nucleus 1 0.500232379411509 1 0.999535241176983 hm5C_site_42732 DeepMRMD:1;iRNA_m5C:0.999535241176983 42733 chr4 123814193 123814193 1 + C G UCEC 123814174 - 123814154 123814194 41 AGTGGATGGATCTCAATGACCTGGCGAAGACTGAAAATACA ACTGGATGGATCTCAATGACCTGGCGAAGACTGAAAATACA < 41bp 1 0.680363755262507 1 0.388645350933075 experiment 0.639272489474986 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT6 ENSG00000170917 CDS Human protein_coding chr4:123814174 chr4:123814193 nonsynonymous SNV 0.955 1 2 hm5C_associated_SNPs_43782 0 0 0 0 0 Ribosome 1 0.500326069589481 1 0.999347860821037 hm5C_site_42733 DeepMRMD:1;iRNA_m5C:0.999347860821037 42734 chr3 141163624 141163624 1 + T C UCEC 141163632 + 141163612 141163652 41 TGTTGCTGATCCTGGAGGATCACTGAGCAAAACCACAAATA TGTTGCTGATCCCGGAGGATCACTGAGCAAAACCACAAATA < 41bp 1 0.379267172827036 1 0.260655224323273 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ZBTB38 ENSG00000177311 CDS Human protein_coding chr3:141163632 chr3:141163624 synonymous SNV . 0 13 hm5C_associated_SNPs_43783 0 0 1 0 0 chromatin 1 0.500231643922819 1 0.999536712154361 hm5C_site_42734 DeepMRMD:1;iRNA_m5C:0.999536712154361 42735 chr22 31658767 31658767 1 + C T UCEC 31658771 + 31658751 31658791 41 GGGGACACTGAGGAGACGTTCCCTAAGGTGCCACCTCCCAC GGGGACACTGAGGAGATGTTCCCTAAGGTGCCACCTCCCAC < 41bp 1 0.434752119128345 1 0.0240149199962616 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658771 chr22:31658767 nonsynonymous SNV 0.999 3 17 hm5C_associated_SNPs_43784 0 0 1 0 1 Cytosol 1 0.50023164399047 1 0.99953671201906 hm5C_site_42735 DeepMRMD:1;iRNA_m5C:0.99953671201906 42736 chr22 41924494 41924494 1 + C T UCEC 41924486 + 41924466 41924506 41 CCACCTTCTCCTTGCAGCCCCTGAAGTGCATCATCAAGCAC CCACCTTCTCCTTGCAGCCCCTGAAGTGTATCATCAAGCAC < 41bp 1 0.595909283770769 1 0.264200687408447 experiment 0.808181432458463 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41924486 chr22:41924494 synonymous SNV . 0 29 hm5C_associated_SNPs_43785 0 0 1 0 1 chromatin 1 0.50023159069312 1 0.99953681861376 hm5C_site_42736 DeepMRMD:1;iRNA_m5C:0.99953681861376 42737 chr5 131607090 131607090 1 + G A UCEC 131607104 + 131607084 131607124 41 GAGCCCGTGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG GAGCCCATGGCCGCGGAGCCCAAGCAGTCAGGCTCCTTCCG < 41bp 1 0.653671752348262 1 0.174668401479721 experiment 0.692656495303476 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607104 chr5:131607090 nonsynonymous SNV 0.000 0 7 hm5C_associated_SNPs_43786 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42737 DeepMRMD:1;iRNA_m5C:0.999536712157815 42738 chr12 21598309 21598309 1 + T A UCEC 21598304 + 21598284 21598324 41 TCTAAAATATTGGAAGAATTCGATGTTGAAGAACAATCAAG TCTAAAATATTGGAAGAATTCGATGATGAAGAACAATCAAG < 41bp 1 0.584247194279888 1 0.442263007164001 experiment 0.831505611440225 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21598304 chr12:21598309 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_43787 0 0 1 0 2 Cytosol 1 0.500231644006069 1 0.999536711987861 hm5C_site_42738 DeepMRMD:1;iRNA_m5C:0.999536711987861 42739 chr1 120254696 120254696 1 + T C UCEC 120254699 + 120254679 120254719 41 AGTGACAGCCTGGACCCTTGCTGCCGGAAGATCTTGCAAGA AGTGACAGCCTGGACCCCTGCTGCCGGAAGATCTTGCAAGA < 41bp 1 0.581793036548424 1 0.441557437181473 experiment 0.836413926903152 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PHGDH ENSG00000092621 CDS Human protein_coding chr1:120254699 chr1:120254696 synonymous SNV . 0 18 hm5C_associated_SNPs_43788 0 0 1 0 1 Ribosome 1 0.500231643917546 1 0.999536712164909 hm5C_site_42739 DeepMRMD:1;iRNA_m5C:0.999536712164909 42740 chr6 13616707 13616707 1 + C A UCEC 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAAGAAAACTCATTCCAGACACTATTTTG < 41bp 1 0.29429914954551 1 0.0850081741809845 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616707 nonsynonymous SNV 0.479 4 24 hm5C_associated_SNPs_43790 0 0 1 0 2 Ribosome 1 0.500231644392274 1 0.999536711215452 hm5C_site_42740 DeepMRMD:1;iRNA_m5C:0.999536711215452 42741 chr9 18887967 18887967 1 + C A UCEC 18887949 + 18887929 18887969 41 TGGACAGATCCTTCAAGTTGCAAACCTTAGCGGTGGGTCTC TGGACAGATCCTTCAAGTTGCAAACCTTAGCGGTGGGTATC < 41bp 1 0.0566927035422112 1 0.033018559217453 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18887949 chr9:18887967 nonsynonymous SNV 0.995 0 39 hm5C_associated_SNPs_43791 0 0 0 0 1 Nucleus 1 0.500231643200258 1 0.999536713599484 hm5C_site_42741 DeepMRMD:1;iRNA_m5C:0.999536713599484 42742 chr2 109365464 109365464 1 + A G UCEC 109365446 + 109365426 109365466 41 ATTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGCATT ATTGTTGAAACTTTTGCCAACAAAAGCGGGCAGTCTGCGTT < 41bp 1 0.375840890784833 1 0.241679340600967 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109365446 chr2:109365464 synonymous SNV . 0 39 hm5C_associated_SNPs_43793 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_42742 DeepMRMD:1;iRNA_m5C:0.999536712157814 42743 chr7 91714912 91714912 1 + C A UCEC 91714906 + 91714886 91714926 41 CCATTCTATTCAGCAGGTTTCAGAACCTTGGCTAGAAGAGA CCATTCTATTCAGCAGGTTTCAGAACATTGGCTAGAAGAGA < 41bp 1 0.335341788841484 1 0.782205641269684 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714906 chr7:91714912 nonsynonymous SNV 0.979 1 27 hm5C_associated_SNPs_43795 0 0 0 0 1 Nucleus 1 0.500231643920179 0.435588717460632 0.999536712159641 hm5C_site_42743 DeepMRMD:0.435588717460632;iRNA_m5C:0.999536712159641 42744 chr7 91714912 91714912 1 + C A UCEC 91714917 + 91714897 91714937 41 AGCAGGTTTCAGAACCTTGGCTAGAAGAGAGAAAAGCTTAC AGCAGGTTTCAGAACATTGGCTAGAAGAGAGAAAAGCTTAC < 41bp 1 0.396572004351768 1 0.472725421190262 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714917 chr7:91714912 nonsynonymous SNV 0.979 1 16 hm5C_associated_SNPs_43796 0 0 0 0 1 Nucleus 1 0.500231643921073 1 0.999536712157855 hm5C_site_42744 DeepMRMD:1;iRNA_m5C:0.999536712157855 42745 chr2 32656069 32656069 1 + G A UCEC 32656070 + 32656050 32656090 41 TAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAA TAGAAGTTCAACAAGAACAACAGCAAAGGAGGCATCCTCAA < 41bp 1 0.326787805129269 1 0.163377016782761 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32656070 chr2:32656069 synonymous SNV . 0 20 hm5C_associated_SNPs_43797 0 0 1 0 1 Nucleus 1 0.500231620819539 1 0.999536758360922 hm5C_site_42745 DeepMRMD:1;iRNA_m5C:0.999536758360922 42746 chr3 112715755 112715755 1 + T G UCEC 112715739 + 112715719 112715759 41 TCTTTTCTACATGCTTATAGCTTGAAGAGAACATTTTTATT TCTTTTCTACATGCTTATAGCTTGAAGAGAACATTTGTATT < 41bp 1 0.50582826280899 1 0.195688456296921 experiment 0.988343474382021 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112715739 chr3:112715755 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_43799 0 0 1 0 2 Ribosome 1 0.500324532244182 1 0.999350935511637 hm5C_site_42746 DeepMRMD:1;iRNA_m5C:0.999350935511637 42747 chr12 112915799 112915799 1 + A C UCEC 112915794 + 112915774 112915814 41 CTCCCGAGTGATTGTCATGACAACGAAAGAAGTGGAGAGAG CTCCCGAGTGATTGTCATGACAACGCAAGAAGTGGAGAGAG < 41bp 1 0.554404659090885 1 0.39040806889534 experiment 0.891190681818231 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915794 chr12:112915799 nonsynonymous SNV 0.994 3 26 hm5C_associated_SNPs_43801 0 0 1 0 1 Ribosome 1 0.500231643039966 1 0.999536713920068 hm5C_site_42747 DeepMRMD:1;iRNA_m5C:0.999536713920068 42748 chr8 17815279 17815279 1 + G A UCEC 17815261 + 17815241 17815281 41 AACAGAAACTTAGACAGTTACAAGATCTTGTTGCTATGGTA AACAGAAACTTAGACAGTTACAAGATCTTGTTGCTATGATA < 41bp 1 0.683750230079532 1 0.216116845607758 experiment 0.632499539840937 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17815261 chr8:17815279 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_43803 0 0 1 0 1 Nucleus 1 0.500231643919946 1 0.999536712160108 hm5C_site_42748 DeepMRMD:1;iRNA_m5C:0.999536712160108 42749 chr4 184192384 184192384 1 + C A UCEC 184192371 + 184192351 184192391 41 CTGTATTTCAACCAAACCAGCCGTTAGTAGATTCTATAGAC CTGTATTTCAACCAAACCAGCCGTTAGTAGATTATATAGAC < 41bp 1 0.021332332795742 1 0.114134311676025 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184192371 chr4:184192384 nonsynonymous SNV 0.015 1 34 hm5C_associated_SNPs_43804 0 0 1 0 1 Cytosol 1 0.500231643921089 1 0.999536712157821 hm5C_site_42749 DeepMRMD:1;iRNA_m5C:0.999536712157821 42750 chr16 29810040 29810040 1 + T G UCEC 29810025 + 29810005 29810045 41 TGCCGAGGGCCGGCCATGGGCCCTTTCTGTCACCATGTCTT TGCCGAGGGCCGGCCATGGGCCCTTTCTGTCACCAGGTCTT < 41bp 1 0.14531823603444 1 0.031805694103241 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF22 ENSG00000079616 CDS Human protein_coding chr16:29810025 chr16:29810040 nonsynonymous SNV 0.998 3 36 hm5C_associated_SNPs_43805 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42750 DeepMRMD:1;iRNA_m5C:0.999536712157815 42751 chr22 51044063 51044063 1 + G A UCEC 51044075 + 51044055 51044095 41 AGGAGGACGACTTCTGGTTCCGTGGCTTCAACATGCGCACG AGGAGGACAACTTCTGGTTCCGTGGCTTCAACATGCGCACG < 41bp 1 0.310558302301581 1 0.467042535543442 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044075 chr22:51044063 nonsynonymous SNV 0.801 3 9 hm5C_associated_SNPs_43806 0 0 1 0 2 exosome 1 0.500242631996904 1 0.999514736006192 hm5C_site_42751 DeepMRMD:1;iRNA_m5C:0.999514736006192 42752 chr12 69119555 69119555 1 + C A UCEC 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTATTATCCTGGGAGACATTGATGGTAA < 41bp 1 0.389713323795785 1 0.308158874511719 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119555 nonsynonymous SNV 0.999 1 16 hm5C_associated_SNPs_43807 0 0 0 0 2 chromatin 1 0.500231643814789 1 0.999536712370422 hm5C_site_42752 DeepMRMD:1;iRNA_m5C:0.999536712370422 42753 chr19 10935776 10935776 1 + A G UCEC 10935765 + 10935745 10935785 41 GATGGGGCCCAGGAGAACACCTTCTCCATGGACCCCCAACT GATGGGGCCCAGGAGAACACCTTCTCCATGGGCCCCCAACT < 41bp 1 0.163673428107787 1 0.109748154878616 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10935765 chr19:10935776 nonsynonymous SNV 0.998 5 32 hm5C_associated_SNPs_43808 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42753 DeepMRMD:1;iRNA_m5C:0.999536712157815 42754 chr1 45242430 45242430 1 + C A UCEC 45242439 + 45242419 45242459 41 GTGGGGAATTTCTCCTGGGGCTCAGAGTGTGAGTGAGGCCC GTGGGGAATTTATCCTGGGGCTCAGAGTGTGAGTGAGGCCC < 41bp 1 0.553324624007835 1 0.11680081486702 experiment 0.893350751984331 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS8 ENSG00000142937 CDS Human protein_coding chr1:45242439 chr1:45242430 nonsynonymous SNV 0.972 2 12 hm5C_associated_SNPs_43809 0 0 1 0 1 Cytosol 1 0.500231643921099 1 0.999536712157803 hm5C_site_42754 DeepMRMD:1;iRNA_m5C:0.999536712157803 42755 chr21 45544578 45544578 1 + C A UCEC 45544584 + 45544564 45544604 41 AAGAGGTTCGAGATCTCTTGCAACCTGTCTTTGGACGCCAT AAGAGGTTCGAGATATCTTGCAACCTGTCTTTGGACGCCAT < 41bp 1 0.257676847257756 1 0.177045077085495 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45544584 chr21:45544578 synonymous SNV . 0 15 hm5C_associated_SNPs_43811 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_42755 DeepMRMD:1;iRNA_m5C:0.999536712157815 42756 chrX 48682083 48682083 1 + G A UCEC 48682101 + 48682081 48682121 41 GGGGGCCTCAGAATCTCAGGCCCCAGGAGAGGAGAACCTAC GGAGGCCTCAGAATCTCAGGCCCCAGGAGAGGAGAACCTAC < 41bp 1 0.305105201543311 1 0.426578968763351 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48682101 chrX:48682083 nonsynonymous SNV 0.002 0 3 hm5C_associated_SNPs_43812 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_42756 DeepMRMD:1;iRNA_m5C:0.999536712157814 42757 chr3 142739464 142739464 1 + G T UCEC 142739480 + 142739460 142739500 41 GAGAGACATAAAACAAAAGGCAGATTAAGTCGATTTGAACC GAGATACATAAAACAAAAGGCAGATTAAGTCGATTTGAACC < 41bp 1 0.229138341430702 1 0.569075524806976 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142739480 chr3:142739464 nonsynonymous SNV 0.999 4 5 hm5C_associated_SNPs_43813 0 0 1 0 2 Cytosol 1 0.500231643921092 0.861848950386048 0.999536712157815 hm5C_site_42757 DeepMRMD:0.861848950386048;iRNA_m5C:0.999536712157815 42758 chr20 1902325 1902325 1 + C T UCEC 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACGTCACCTTGCAGGGGGACCCTCTTTGTGGGACTGCCAAC < 41bp 1 0.0946251908561221 1 0.0271573960781097 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902325 nonsynonymous SNV 0.877 2 27 hm5C_associated_SNPs_43814 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42758 DeepMRMD:1;iRNA_m5C:0.999536712157815 42759 chr15 22969237 22969237 1 + C T UCEC 22969231 + 22969211 22969251 41 AGCCGGTACCTGACGCTGGACGGCTTCGACGCCATGTTCCG AGCCGGTACCTGACGCTGGACGGCTTTGACGCCATGTTCCG < 41bp 1 0.567338734110539 1 0.119818359613419 experiment 0.865322531778922 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969231 chr15:22969237 synonymous SNV . 0 27 hm5C_associated_SNPs_43815 0 0 1 0 1 Cytosol 1 0.500231643554962 1 0.999536712890075 hm5C_site_42759 DeepMRMD:1;iRNA_m5C:0.999536712890075 42760 chr16 90001497 90001497 1 + G A UCEC 90001517 + 90001497 90001537 41 GCACCCTCAAGCTGGCCACGCCCACCTACGGGGACCTCAAC ACACCCTCAAGCTGGCCACGCCCACCTACGGGGACCTCAAC < 41bp 1 0.0692133623786521 1 0.0723415315151215 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TUBB3 ENSG00000198211;ENSG00000258947 CDS Human other chr16:90001517 chr16:90001497 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_43816 0 0 1 0 0 chromatin 1 0.500231643921083 1 0.999536712157834 hm5C_site_42760 DeepMRMD:1;iRNA_m5C:0.999536712157834 42761 chr11 20139740 20139740 1 + G A UCEC 20139725 + 20139705 20139745 41 GGCAGCCAACTACTCCAGCCCCCAGAGCTATGACAGCGACT GGCAGCCAACTACTCCAGCCCCCAGAGCTATGACAACGACT < 41bp 1 0.0560574459251714 1 0.307279855012894 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20139725 chr11:20139740 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_43817 0 0 1 0 1 Nucleus 1 0.50023182859416 1 0.999536342811679 hm5C_site_42761 DeepMRMD:1;iRNA_m5C:0.999536342811679 42762 chr5 65321800 65321800 1 + C T UCEC 65321797 + 65321777 65321817 41 ATAATTACTTACAGCAGTTGCCCCCAGAGGTAATGTATTTT ATAATTACTTACAGCAGTTGCCCTCAGAGGTAATGTATTTT < 41bp 1 0.0191206582105095 1 0.0668041706085205 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ERBIN ENSG00000112851 CDS Human protein_coding chr5:65321797 chr5:65321800 nonsynonymous SNV 0.973 1 24 hm5C_associated_SNPs_43818 0 0 1 0 1 Nucleus 1 0.500231659736217 1 0.999536680527566 hm5C_site_42762 DeepMRMD:1;iRNA_m5C:0.999536680527566 42763 chr1 94964188 94964188 1 + G T UCEC 94964179 + 94964159 94964199 41 TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC TTCGATCTGGGGCTAATGTTCTAATTTGTTGTCCAAATGGC < 41bp 1 0.508146545234327 1 0.172998905181885 experiment 0.983706909531346 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964179 chr1:94964188 nonsynonymous SNV 1.000 5 30 hm5C_associated_SNPs_43820 0 0 1 0 2 Nucleus 1 0.500231643924906 1 0.999536712150188 hm5C_site_42763 DeepMRMD:1;iRNA_m5C:0.999536712150188 42764 chrX 153533707 153533707 1 + C A UCEC 153533726 + 153533706 153533746 41 TCTACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG TATACATCATGAGGTACAAGCAGTCAGATCCAGAGAATCCG < 41bp 1 0.144068713062479 1 0.167200356721878 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153533726 chrX:153533707 nonsynonymous SNV 0.461 3 2 hm5C_associated_SNPs_43821 0 0 0 0 3 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42764 DeepMRMD:1;iRNA_m5C:0.999536712157815 42765 chr15 73468829 73468829 1 + A T UCEC 73468840 + 73468820 73468860 41 GACTGGAAAACCAACTCCAACTGTGAAGTGGGTCAAAAATG GACTGGAAATCCAACTCCAACTGTGAAGTGGGTCAAAAATG < 41bp 1 0.145786756119813 1 0.366112053394318 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient NEO1 ENSG00000067141 CDS Human protein_coding chr15:73468840 chr15:73468829 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_43823 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42765 DeepMRMD:1;iRNA_m5C:0.999536712157815 42766 chr20 5154257 5154257 1 + A T UCEC 5154273 + 5154253 5154293 41 GCAGATGATACCCCGGAGGTCCTCAATAGGGCCCTTTCCAA GCAGTTGATACCCCGGAGGTCCTCAATAGGGCCCTTTCCAA < 41bp 1 0.172832865332577 1 0.0521049797534943 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDS2 ENSG00000101290 CDS Human protein_coding chr20:5154273 chr20:5154257 nonsynonymous SNV 0.929 3 5 hm5C_associated_SNPs_43824 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42766 DeepMRMD:1;iRNA_m5C:0.999536712157815 42767 chr12 53516952 53516952 1 + C T UCEC 53516960 + 53516940 53516980 41 TTCTGCTTCGTCCTGGGGTTCTTCTATCCCGTCATGCTGAT TTCTGCTTCGTCTTGGGGTTCTTCTATCCCGTCATGCTGAT < 41bp 1 0.128886158685965 1 0.0452195703983307 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53516960 chr12:53516952 synonymous SNV . 0 13 hm5C_associated_SNPs_43825 0 0 0 0 2 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42767 DeepMRMD:1;iRNA_m5C:0.999536712157815 42768 chr3 49568286 49568286 1 + C G UCEC 49568306 + 49568286 49568326 41 CCACACCCTGGAGGGCCTCCCCCTTGACACTGATAAGGGTG GCACACCCTGGAGGGCCTCCCCCTTGACACTGATAAGGGTG < 41bp 1 0.231152400485926 1 0.310950815677643 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DAG1 ENSG00000173402 CDS Human protein_coding chr3:49568306 chr3:49568286 nonsynonymous SNV 0.109 4 1 hm5C_associated_SNPs_43826 0 0 1 0 1 Nucleus 1 0.500231643862384 1 0.999536712275231 hm5C_site_42768 DeepMRMD:1;iRNA_m5C:0.999536712275231 42769 chr9 100418042 100418042 1 + G C UCEC 100418035 + 100418015 100418055 41 AACTTCCAGTTCCGTTGGAGCTGGGAAGATTGGTAAGTGAT AACTTCCAGTTCCGTTGGAGCTGGGAACATTGGTAAGTGAT < 41bp 1 0.53982402396287 1 0.707043468952179 experiment 0.920351952074261 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100418035 chr9:100418042 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_43827 0 0 1 0 2 Nucleus 1 0.500231643921092 0.585913062095642 0.999536712157815 hm5C_site_42769 DeepMRMD:0.585913062095642;iRNA_m5C:0.999536712157815 42770 chr10 75758107 75758107 1 + C G UCEC 75758099 + 75758079 75758119 41 TGACCTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCA TGACCTCACCGCGCCCGTGGCCGCCGTGGAGGCGGCCGTCA < 41bp 1 0.311315165903427 1 0.297870934009552 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758099 chr10:75758107 nonsynonymous SNV 1.000 1 29 hm5C_associated_SNPs_43829 0 0 1 0 1 Nucleus 1 0.500231853964349 1 0.999536292071301 hm5C_site_42770 DeepMRMD:1;iRNA_m5C:0.999536292071301 42771 chr10 75758107 75758107 1 + C G UCEC 75758102 + 75758082 75758122 41 CCTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAGCA CCTCACCGCGCCCGTGGCCGCCGTGGAGGCGGCCGTCAGCA < 41bp 1 0.408114145143734 1 0.488912791013718 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758102 chr10:75758107 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_43831 0 0 1 0 1 Nucleus 1 0.500231643941013 1 0.999536712117973 hm5C_site_42771 DeepMRMD:1;iRNA_m5C:0.999536712117973 42772 chr10 75758107 75758107 1 + C G UCEC 75758103 + 75758083 75758123 41 CTCACCGCGCCCGTGGCCGCCGTGCAGGCGGCCGTCAGCAA CTCACCGCGCCCGTGGCCGCCGTGGAGGCGGCCGTCAGCAA < 41bp 1 0.589775784385795 1 0.680960416793823 experiment 0.820448431228411 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758103 chr10:75758107 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_43832 0 0 1 0 1 Nucleus 1 0.500231539105867 0.638079166412354 0.999536921788266 hm5C_site_42772 DeepMRMD:0.638079166412354;iRNA_m5C:0.999536921788266 42773 chr10 75758107 75758107 1 + C G UCEC 75758114 + 75758094 75758134 41 CGTGGCCGCCGTGCAGGCGGCCGTCAGCAACCTCGTCCGGG CGTGGCCGCCGTGGAGGCGGCCGTCAGCAACCTCGTCCGGG < 41bp 1 0.110631433633045 1 0.0477902293205261 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758114 chr10:75758107 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_43834 0 0 1 0 1 Nucleus 1 0.500231645521316 1 0.999536708957368 hm5C_site_42773 DeepMRMD:1;iRNA_m5C:0.999536708957368 42774 chr10 75758107 75758107 1 + C G UCEC 75758115 + 75758095 75758135 41 GTGGCCGCCGTGCAGGCGGCCGTCAGCAACCTCGTCCGGGT GTGGCCGCCGTGGAGGCGGCCGTCAGCAACCTCGTCCGGGT < 41bp 1 0.592218730389703 1 0.204643100500107 experiment 0.815562539220594 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75758115 chr10:75758107 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_43835 0 0 1 0 1 Nucleus 1 0.500232245162351 1 0.999535509675298 hm5C_site_42774 DeepMRMD:1;iRNA_m5C:0.999535509675298 42775 chr19 13054584 13054584 1 + G A UCEC 13054566 + 13054546 13054586 41 AGGACAAACAGGACGAGGAGCAGAGGCTTAAGGAGGAGGAA AGGACAAACAGGACGAGGAGCAGAGGCTTAAGGAGGAGAAA < 41bp 1 0.601767457370909 1 0.532667219638824 experiment 0.796465085258182 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054566 chr19:13054584 nonsynonymous SNV 0.827 1 39 hm5C_associated_SNPs_43836 0 0 1 0 1 Ribosome 1 0.500231643921093 0.934665560722352 0.999536712157815 hm5C_site_42775 DeepMRMD:0.934665560722352;iRNA_m5C:0.999536712157815 42776 chr19 13054584 13054584 1 + G A UCEC 13054572 + 13054552 13054592 41 AACAGGACGAGGAGCAGAGGCTTAAGGAGGAGGAAGAAGAC AACAGGACGAGGAGCAGAGGCTTAAGGAGGAGAAAGAAGAC < 41bp 1 0.575603473395481 1 0.468949824571609 experiment 0.848793053209038 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054572 chr19:13054584 nonsynonymous SNV 0.827 1 33 hm5C_associated_SNPs_43837 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42776 DeepMRMD:1;iRNA_m5C:0.999536712157815 42777 chr19 13054584 13054584 1 + G A UCEC 13054601 + 13054581 13054621 41 GAGGAAGAAGACAAGAAACGCAAAGAGGAGGAGGAGGCAGA GAGAAAGAAGACAAGAAACGCAAAGAGGAGGAGGAGGCAGA < 41bp 1 0.539213906443825 1 0.584295630455017 experiment 0.921572187112351 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054601 chr19:13054584 nonsynonymous SNV 0.827 1 4 hm5C_associated_SNPs_43838 0 0 1 0 1 Ribosome 1 0.500231643699921 0.831408739089966 0.999536712600158 hm5C_site_42777 DeepMRMD:0.831408739089966;iRNA_m5C:0.999536712600158 42778 chr5 174156544 174156544 1 + C G UCEC 174156550 + 174156530 174156570 41 CCGCCTGTGGGACTCTATGCCACGCCAGTGGGATATGGCAT CCGCCTGTGGGACTGTATGCCACGCCAGTGGGATATGGCAT < 41bp 1 0.498959266282229 1 0.381988316774368 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSX2 ENSG00000120149 CDS Human protein_coding chr5:174156550 chr5:174156544 synonymous SNV . 0 15 hm5C_associated_SNPs_43839 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42778 DeepMRMD:1;iRNA_m5C:0.999536712157815 42779 chr11 48164492 48164492 1 + C T UCEC 48164480 + 48164460 48164500 41 TTTTGTTTTAGATCCCCCTCCTCCAGATGGATCCCCTAATA TTTTGTTTTAGATCCCCCTCCTCCAGATGGATTCCCTAATA < 41bp 1 0.455682279875627 1 0.900282323360443 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48164480 chr11:48164492 nonsynonymous SNV 0.999 1 33 hm5C_associated_SNPs_43840 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 0.199435353279114 0.999536712157815 hm5C_site_42779 DeepMRMD:0.199435353279114;iRNA_m5C:0.999536712157815 42780 chr6 31602091 31602091 1 + G C UCEC 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACA < 41bp 1 0.167857561278639 1 0.0419564545154572 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602091 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_43841 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42780 DeepMRMD:1;iRNA_m5C:0.999536712157815 42781 chr6 31602091 31602091 1 + G C UCEC 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACAT < 41bp 1 0.32246472698891 1 0.0596903264522552 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602091 nonsynonymous SNV 0.998 1 39 hm5C_associated_SNPs_43842 0 0 1 0 2 Ribosome 1 0.500231643921103 1 0.999536712157794 hm5C_site_42781 DeepMRMD:1;iRNA_m5C:0.999536712157794 42782 chr6 31602091 31602091 1 + G C UCEC 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACATA < 41bp 1 0.382129509146943 1 0.155278325080872 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602091 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_43843 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42782 DeepMRMD:1;iRNA_m5C:0.999536712157815 42783 chr6 31602091 31602091 1 + G C UCEC 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACATACA < 41bp 1 0.448426737927866 1 0.733695030212402 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602091 nonsynonymous SNV 0.998 1 36 hm5C_associated_SNPs_43844 0 0 1 0 2 Ribosome 1 0.500231643921092 0.532609939575196 0.999536712157817 hm5C_site_42783 DeepMRMD:0.532609939575196;iRNA_m5C:0.999536712157817 42784 chr6 31602091 31602091 1 + G C UCEC 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGACATACAGGCA < 41bp 1 0.411391557511243 1 0.750946998596191 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602091 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_43845 0 0 1 0 2 Ribosome 1 0.500231643921092 0.498106002807618 0.999536712157816 hm5C_site_42784 DeepMRMD:0.498106002807618;iRNA_m5C:0.999536712157816 42785 chr1 214795537 214795537 1 + G T UCEC 214795520 + 214795500 214795540 41 TTCAAGAACTCCAACTCCAACTGGAGAAAGCAAAAGTGGAA TTCAAGAACTCCAACTCCAACTGGAGAAAGCAAAAGTTGAA < 41bp 1 0.613359130277909 1 0.69642448425293 experiment 0.773281739444183 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214795520 chr1:214795537 synonymous SNV . 0 38 hm5C_associated_SNPs_43846 0 0 1 0 1 Nucleus 1 0.500231643921094 0.60715103149414 0.999536712157813 hm5C_site_42785 DeepMRMD:0.60715103149414;iRNA_m5C:0.999536712157813 42786 chr1 145368546 145368546 1 + C G UCEC 145368536 + 145368516 145368556 41 GTCAATGTACTTTGAACTACCTGACTCATTCCAGCACTACA GTCAATGTACTTTGAACTACCTGACTCATTGCAGCACTACA < 41bp 1 0.0746581405889773 1 0.0875885188579559 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368536 chr1:145368546 nonsynonymous SNV . 0 31 hm5C_associated_SNPs_43847 0 0 0 0 0 exosome 1 0.500235748381206 1 0.999528503237588 hm5C_site_42786 DeepMRMD:1;iRNA_m5C:0.999528503237588 42787 chr1 145368546 145368546 1 + C G UCEC 145368540 + 145368520 145368560 41 ATGTACTTTGAACTACCTGACTCATTCCAGCACTACAGAAG ATGTACTTTGAACTACCTGACTCATTGCAGCACTACAGAAG < 41bp 1 0.0782422555618107 1 0.184998869895935 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBPF9 ENSG00000163386 CDS Human other chr1:145368540 chr1:145368546 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_43848 0 0 0 0 0 exosome 1 0.500231999722646 1 0.999536000554707 hm5C_site_42787 DeepMRMD:1;iRNA_m5C:0.999536000554707 42788 chr1 201966463 201966463 1 + A G UCEC 201966479 + 201966459 201966499 41 CTTCATGCCACCGTCCTTTCCATTTGGAGGAATGGAGAACC CTTCGTGCCACCGTCCTTTCCATTTGGAGGAATGGAGAACC < 41bp 1 0.175058875127 1 0.205118089914322 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966479 chr1:201966463 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_43849 0 0 1 0 1 Ribosome 1 0.500231643921289 1 0.999536712157422 hm5C_site_42788 DeepMRMD:1;iRNA_m5C:0.999536712157422 42789 chr2 241516064 241516064 1 + C T UCEC 241516046 + 241516026 241516066 41 CTGACCCGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACCGC CTGACCCGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACTGC < 41bp 1 0.038553887724629 1 0.0260923504829407 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516046 chr2:241516064 synonymous SNV . 0 39 hm5C_associated_SNPs_43850 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_42789 DeepMRMD:1;iRNA_m5C:0.999536712157815 42790 chr2 241516064 241516064 1 + C T UCEC 241516052 + 241516032 241516072 41 CGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACCGCAGAACC CGGCCCGTGGAGGCCCTTTTCCAGCTGTGGACTGCAGAACC < 41bp 1 0.480532122813799 1 0.841246783733368 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516052 chr2:241516064 synonymous SNV . 0 33 hm5C_associated_SNPs_43851 0 0 0 0 1 chromatin 1 0.500231646837501 0.317506432533264 0.999536706324998 hm5C_site_42790 DeepMRMD:0.317506432533264;iRNA_m5C:0.999536706324998 42791 chr17 7214406 7214406 1 + A G UCEC 7214415 + 7214395 7214435 41 CAACTCATAATATGGATGTCCCCAACATCAAAAGGAATGAC CAACTCATAATGTGGATGTCCCCAACATCAAAAGGAATGAC < 41bp 1 0.288100455013201 1 0.0652668178081512 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214415 chr17:7214406 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_43853 0 0 1 0 2 Ribosome 1 0.500231643919481 1 0.999536712161038 hm5C_site_42791 DeepMRMD:1;iRNA_m5C:0.999536712161038 42792 chr17 7214406 7214406 1 + A G UCEC 7214416 + 7214396 7214436 41 AACTCATAATATGGATGTCCCCAACATCAAAAGGAATGACT AACTCATAATGTGGATGTCCCCAACATCAAAAGGAATGACT < 41bp 1 0.0544777274607973 1 0.0951005518436432 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214416 chr17:7214406 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_43854 0 0 1 0 2 Ribosome 1 0.500231642406935 1 0.99953671518613 hm5C_site_42792 DeepMRMD:1;iRNA_m5C:0.99953671518613 42793 chr14 104618473 104618473 1 + G A UCEC 104618487 + 104618467 104618507 41 TCACACGGGAGGCCATGCACCTGCTGCAGGCCCCTGCCAGC TCACACAGGAGGCCATGCACCTGCTGCAGGCCCCTGCCAGC < 41bp 1 0.461142614106486 1 0.516991436481476 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF26A ENSG00000066735 CDS Human protein_coding chr14:104618487 chr14:104618473 nonsynonymous SNV 0.470 0 7 hm5C_associated_SNPs_43855 0 0 1 0 0 Ribosome 1 0.500231337648189 0.966017127037048 0.999537324703623 hm5C_site_42793 DeepMRMD:0.966017127037048;iRNA_m5C:0.999537324703623 42794 chr9 137021706 137021706 1 + G T UCEC 137021694 + 137021674 137021714 41 TTCAGACGAAAGAGATTGTACAGAAACTACAAGGCCACACA TTCAGACGAAAGAGATTGTACAGAAACTACAATGCCACACA < 41bp 1 0.676395416783829 1 0.511609494686127 experiment 0.647209166432342 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR5 ENSG00000196363 CDS Human protein_coding chr9:137021694 chr9:137021706 nonsynonymous SNV 0.974 1 33 hm5C_associated_SNPs_43856 0 0 1 0 2 Cytosol 1 0.500231633806161 0.976781010627746 0.999536732387678 hm5C_site_42794 DeepMRMD:0.976781010627746;iRNA_m5C:0.999536732387678 42795 chr3 47046768 47046768 1 + G A UCEC 47046776 + 47046756 47046796 41 TACCTCATCCGCGTGGAGCCCTTCACCTCCCTGCACGTCCA TACCTCATCCGCATGGAGCCCTTCACCTCCCTGCACGTCCA < 41bp 1 0.191748972957394 1 0.131726503372192 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47046776 chr3:47046768 nonsynonymous SNV 0.921 0 13 hm5C_associated_SNPs_43857 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42795 DeepMRMD:1;iRNA_m5C:0.999536712157815 42796 chr7 98591326 98591326 1 + A G UCEC 98591325 + 98591305 98591345 41 CCCTGGAAGGCATCGTCGATCAGATGGTCTGGTTCAGAGAA CCCTGGAAGGCATCGTCGATCGGATGGTCTGGTTCAGAGAA < 41bp 1 0.320765064232394 1 0.418165147304535 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98591325 chr7:98591326 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_43858 0 0 1 0 1 Nucleus 1 0.500231644167251 1 0.999536711665497 hm5C_site_42796 DeepMRMD:1;iRNA_m5C:0.999536711665497 42797 chr13 113487178 113487178 1 + G A UCEC 113487177 + 113487157 113487197 41 GAACTGCTTTTTTATAGGAGCGCGAGGAGCTGTTTTTCCGG GAACTGCTTTTTTATAGGAGCACGAGGAGCTGTTTTTCCGG < 41bp 1 0.622262269986905 1 0.361166089773178 experiment 0.75547546002619 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487177 chr13:113487178 nonsynonymous SNV 0.037 1 22 hm5C_associated_SNPs_43859 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_42797 DeepMRMD:1;iRNA_m5C:0.999536712157815 42798 chr17 4797344 4797344 1 + G A UCEC 4797353 + 4797333 4797373 41 AGGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACC AGGAGATCACCAGGACCCAGCCCCCATACGGGGGCGGCACC < 41bp 1 0.0630273339877988 1 0.0883751213550568 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797353 chr17:4797344 nonsynonymous SNV 0.646 1 12 hm5C_associated_SNPs_43860 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_42798 DeepMRMD:1;iRNA_m5C:0.999536712157813 42799 chr17 4797344 4797344 1 + G A UCEC 4797354 + 4797334 4797374 41 GGAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCA GGAGATCACCAGGACCCAGCCCCCATACGGGGGCGGCACCA < 41bp 1 0.487118154570888 1 0.852003931999207 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797354 chr17:4797344 nonsynonymous SNV 0.646 1 11 hm5C_associated_SNPs_43861 0 0 1 0 2 Ribosome 1 0.500231643921016 0.295992136001586 0.999536712157967 hm5C_site_42799 DeepMRMD:0.295992136001586;iRNA_m5C:0.999536712157967 42800 chr17 4797344 4797344 1 + G A UCEC 4797355 + 4797335 4797375 41 GAGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCAT GAGATCACCAGGACCCAGCCCCCATACGGGGGCGGCACCAT < 41bp 1 0.0629304491726652 1 0.238038331270218 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797355 chr17:4797344 nonsynonymous SNV 0.646 1 10 hm5C_associated_SNPs_43862 0 0 1 0 2 Ribosome 1 0.500231643921024 1 0.999536712157952 hm5C_site_42800 DeepMRMD:1;iRNA_m5C:0.999536712157952 42801 chr17 4797344 4797344 1 + G A UCEC 4797356 + 4797336 4797376 41 AGATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATG AGATCACCAGGACCCAGCCCCCATACGGGGGCGGCACCATG < 41bp 1 0.0758188898327105 1 0.164766281843185 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797356 chr17:4797344 nonsynonymous SNV 0.646 1 9 hm5C_associated_SNPs_43863 0 0 1 0 2 Ribosome 1 0.500231609868917 1 0.999536780262167 hm5C_site_42801 DeepMRMD:1;iRNA_m5C:0.999536780262167 42802 chr17 4797344 4797344 1 + G A UCEC 4797357 + 4797337 4797377 41 GATCACCGGGACCCAGCCCCCATACGGGGGCGGCACCATGG GATCACCAGGACCCAGCCCCCATACGGGGGCGGCACCATGG < 41bp 1 0.121066748955881 1 0.182424545288086 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797357 chr17:4797344 nonsynonymous SNV 0.646 1 8 hm5C_associated_SNPs_43864 0 0 1 0 2 Ribosome 1 0.500231643920767 1 0.999536712158467 hm5C_site_42802 DeepMRMD:1;iRNA_m5C:0.999536712158467 42803 chr2 102486200 102486200 1 + C T UCEC 102486184 + 102486164 102486204 41 CAGTGAGGAGTCGGGGACGACGGATGAGGAGGACGACGATG CAGTGAGGAGTCGGGGACGACGGATGAGGAGGACGATGATG < 41bp 1 0.687945262958626 1 0.589079439640045 experiment 0.624109474082747 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486184 chr2:102486200 synonymous SNV . 0 37 hm5C_associated_SNPs_43865 0 0 1 0 0 Ribosome 1 0.500231638057836 0.82184112071991 0.999536723884328 hm5C_site_42803 DeepMRMD:0.82184112071991;iRNA_m5C:0.999536723884328 42804 chr6 44116545 44116545 1 + C T UCEC 44116536 + 44116516 44116556 41 CCCACCTTGCCAGGGAGCACCTCTCCATCCGAGGCTTCATC CCCACCTTGCCAGGGAGCACCTCTCCATCTGAGGCTTCATC < 41bp 1 0.0811494497716061 1 0.280007869005203 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116536 chr6:44116545 stopgain 1.000 1 30 hm5C_associated_SNPs_43867 0 0 1 3 1 Ribosome 1 0.500181462772642 1 0.999637074454716 hm5C_site_42804 DeepMRMD:1;iRNA_m5C:0.999637074454716 42805 chr5 179151705 179151705 1 + G A UCEC 179151689 + 179151669 179151709 41 TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATG TGGTATGGAGTATAAGAAAACTGATGCACCTCAACCAGATG < 41bp 1 0.450762662658505 1 0.334704428911209 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151689 chr5:179151705 synonymous SNV . 0 37 hm5C_associated_SNPs_43868 0 0 1 0 2 Nucleus 1 0.500231643952175 1 0.999536712095651 hm5C_site_42805 DeepMRMD:1;iRNA_m5C:0.999536712095651 42806 chr5 179151705 179151705 1 + G A UCEC 179151698 + 179151678 179151718 41 GTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAG GTATAAGAAAACTGATGCACCTCAACCAGATGTGAAGGAAG < 41bp 1 0.50177254107951 1 0.617846131324768 experiment 0.996454917840979 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151698 chr5:179151705 synonymous SNV . 0 28 hm5C_associated_SNPs_43869 0 0 1 0 2 Nucleus 1 0.5002316439209 0.764307737350464 0.9995367121582 hm5C_site_42806 DeepMRMD:0.764307737350464;iRNA_m5C:0.9995367121582 42807 chr5 179151705 179151705 1 + G A UCEC 179151700 + 179151680 179151720 41 ATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAG ATAAGAAAACTGATGCACCTCAACCAGATGTGAAGGAAGAG < 41bp 1 0.209983901085618 1 0.235217481851578 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151700 chr5:179151705 synonymous SNV . 0 26 hm5C_associated_SNPs_43870 0 0 1 0 2 Nucleus 1 0.50023164391974 1 0.99953671216052 hm5C_site_42807 DeepMRMD:1;iRNA_m5C:0.99953671216052 42808 chr5 179151705 179151705 1 + G A UCEC 179151704 + 179151684 179151724 41 GAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAG GAAAACTGATGCACCTCAACCAGATGTGAAGGAAGAGGAAG < 41bp 1 0.494210131373283 1 0.71641343832016 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CANX ENSG00000127022 CDS Human protein_coding chr5:179151704 chr5:179151705 synonymous SNV . 0 22 hm5C_associated_SNPs_43871 0 0 1 0 2 Nucleus 1 0.50022483781124 0.56717312335968 0.999550324377519 hm5C_site_42808 DeepMRMD:0.56717312335968;iRNA_m5C:0.999550324377519 42809 chr19 50728934 50728934 1 + C T UCEC 50728929 + 50728909 50728949 41 TGAAGAATGACAACTCCTCCCGATTCGTGAGTGCCAGGGGT TGAAGAATGACAACTCCTCCCGATTTGTGAGTGCCAGGGGT < 41bp 1 0.109123117310498 1 0.204719394445419 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYH14 ENSG00000105357 CDS Human protein_coding chr19:50728929 chr19:50728934 synonymous SNV . 0 26 hm5C_associated_SNPs_43872 1 0 0 0 1 cytosol 1 0.500231635061366 1 0.999536729877268 hm5C_site_42809 DeepMRMD:1;iRNA_m5C:0.999536729877268 not specified not specified 42810 chr22 39078405 39078405 1 + C A UCEC 39078388 + 39078368 39078408 41 AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAGCCACT AGATGTTTCCGGAGAGGGTCCGGTCCGCGGCCGGAGCAACT < 41bp 1 0.33043520831703 1 0.542656540870667 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078388 chr22:39078405 synonymous SNV . 0 38 hm5C_associated_SNPs_43873 0 0 1 0 2 Ribosome 1 0.50023164392109 0.914686918258666 0.999536712157819 hm5C_site_42810 DeepMRMD:0.914686918258666;iRNA_m5C:0.999536712157819 42811 chr9 130420676 130420676 1 + C T UCEC 130420683 + 130420663 130420703 41 ATATCAATAAGCGCAGAGAGCCGCTCCCCAGCCTGGAGGCT ATATCAATAAGCGTAGAGAGCCGCTCCCCAGCCTGGAGGCT < 41bp 1 0.10651547589185 1 0.0682820081710815 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420683 chr9:130420676 synonymous SNV . 0 14 hm5C_associated_SNPs_43874 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42811 DeepMRMD:1;iRNA_m5C:0.999536712157815 42812 chr1 45279383 45279383 1 + G A UCEC 45279398 + 45279378 45279418 41 GTGTCGCCGCCGGAGAGGCACCCTGCCCCGGGAGCATCACC GTGTCACCGCCGGAGAGGCACCCTGCCCCGGGAGCATCACC < 41bp 1 0.169866587530943 1 0.0596871078014374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BTBD19 ENSG00000222009 CDS Human protein_coding chr1:45279398 chr1:45279383 nonsynonymous SNV 0.941 1 6 hm5C_associated_SNPs_43875 0 0 1 0 1 chromatin 1 0.500231643922769 1 0.999536712154463 hm5C_site_42812 DeepMRMD:1;iRNA_m5C:0.999536712154463 42813 chr1 249211771 249211771 1 + A G UCEC 249211767 + 249211747 249211787 41 AGGAGCTTGGATCTAGGAGGCAGTATGGTAATAAAATTTGT AGGAGCTTGGATCTAGGAGGCAGTGTGGTAATAAAATTTGT < 41bp 1 0.391559924922833 1 0.432125151157379 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249211767 chr1:249211771 nonsynonymous SNV 0.931 1 25 hm5C_associated_SNPs_43876 0 0 0 0 0 Cytosol 1 0.500231643921095 1 0.99953671215781 hm5C_site_42813 DeepMRMD:1;iRNA_m5C:0.99953671215781 42814 chr18 72345381 72345381 1 + T C UCEC 72345397 + 72345377 72345417 41 TAGGTGTGCAATTACAAGAGCATTCCTATCTTGAGAAGGGC TAGGCGTGCAATTACAAGAGCATTCCTATCTTGAGAAGGGC < 41bp 1 0.00636361050046073 1 0.0962545871734619 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF407 ENSG00000215421 CDS Human protein_coding chr18:72345397 chr18:72345381 synonymous SNV . 0 5 hm5C_associated_SNPs_43877 0 0 1 0 0 Cytosol 1 0.500231643926752 1 0.999536712146495 hm5C_site_42814 DeepMRMD:1;iRNA_m5C:0.999536712146495 Multiple complex diseases 42815 chr22 38282851 38282851 1 + A G UCEC 38282832 + 38282812 38282852 41 ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAG ATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGGG < 41bp 1 0.393745926030548 1 0.757546424865723 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38282832 chr22:38282851 nonsynonymous SNV 0.996 3 40 hm5C_associated_SNPs_43878 0 0 1 0 2 Cytosol 1 0.500231643921092 0.484907150268554 0.999536712157815 hm5C_site_42815 DeepMRMD:0.484907150268554;iRNA_m5C:0.999536712157815 42816 chr3 193336665 193336665 1 + G A UCEC 193336676 + 193336656 193336696 41 AGGTTCTCCGGAAGAAACGGCGTTTAGAGCAACAGATCGTG AGGTTCTCCAGAAGAAACGGCGTTTAGAGCAACAGATCGTG < 41bp 1 0.0401440114838721 1 0.0357896685600281 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OPA1 ENSG00000198836 CDS Human protein_coding chr3:193336676 chr3:193336665 synonymous SNV . 0 10 hm5C_associated_SNPs_43880 0 0 1 0 2 Nucleus 1 0.500231533005984 1 0.999536933988032 hm5C_site_42816 DeepMRMD:1;iRNA_m5C:0.999536933988032 42817 chr19 1440432 1440432 1 + C A UCEC 1440440 + 1440420 1440460 41 ATCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTA ATCGGGGCCACCAACTCCTCCCGCTTCATCCCTCTCAAGTA < 41bp 1 0.21522351824686 1 0.164587795734406 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440440 chr19:1440432 nonsynonymous SNV 0.828 0 13 hm5C_associated_SNPs_43881 0 0 1 0 1 Ribosome 1 0.500231636178538 1 0.999536727642924 hm5C_site_42817 DeepMRMD:1;iRNA_m5C:0.999536727642924 42818 chr19 1440432 1440432 1 + C A UCEC 1440441 + 1440421 1440461 41 TCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTAA TCGGGGCCACCAACTCCTCCCGCTTCATCCCTCTCAAGTAA < 41bp 1 0.2695617588925 1 0.362597435712814 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPS15 ENSG00000115268 CDS Human protein_coding chr19:1440441 chr19:1440432 nonsynonymous SNV 0.828 0 12 hm5C_associated_SNPs_43882 0 0 1 0 1 Ribosome 1 0.500231643323495 1 0.999536713353009 hm5C_site_42818 DeepMRMD:1;iRNA_m5C:0.999536713353009 42819 chr8 100182348 100182348 1 + A G UCEC 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCGGC < 41bp 1 0.0892186244707443 1 0.120890200138092 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182348 nonsynonymous SNV 0.998 3 39 hm5C_associated_SNPs_43883 0 0 1 0 2 Nucleus 1 0.500231641794441 1 0.999536716411118 hm5C_site_42819 DeepMRMD:1;iRNA_m5C:0.999536716411118 42820 chr20 32664984 32664984 1 + A G UCEC 32664995 + 32664975 32665015 41 GCCTGCCCCAGGGGGAAGCACGGACCCGAGACGACGGCGAT GCCTGCCCCGGGGGGAAGCACGGACCCGAGACGACGGCGAT < 41bp 1 0.483249954764315 1 0.726381480693817 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664995 chr20:32664984 nonsynonymous SNV 0.025 2 10 hm5C_associated_SNPs_43884 0 0 1 0 1 Cytosol 1 0.500231643921092 0.547237038612366 0.999536712157815 hm5C_site_42820 DeepMRMD:0.547237038612366;iRNA_m5C:0.999536712157815 42821 chr20 32664984 32664984 1 + A G UCEC 32665000 + 32664980 32665020 41 CCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGGA CCCCGGGGGGAAGCACGGACCCGAGACGACGGCGATGAGGA < 41bp 1 0.364614591085529 1 0.555648565292358 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665000 chr20:32664984 nonsynonymous SNV 0.025 2 5 hm5C_associated_SNPs_43886 0 0 1 0 1 Cytosol 1 0.500231645058643 0.888702869415284 0.999536709882714 hm5C_site_42821 DeepMRMD:0.888702869415284;iRNA_m5C:0.999536709882714 42822 chr5 92921104 92921104 1 + C T UCEC 92921110 + 92921090 92921130 41 ACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCA ACATGCCGTGCCAATAGGAACTGTCCCATCGACCAGCACCA < 41bp 1 0.0910603312061804 1 0.128621280193329 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NR2F1 ENSG00000175745 CDS Human protein_coding chr5:92921110 chr5:92921104 synonymous SNV . 0 15 hm5C_associated_SNPs_43887 0 0 1 0 1 nucleus 1 0.5002316434705 1 0.999536713059 hm5C_site_42822 DeepMRMD:1;iRNA_m5C:0.999536713059 42823 chr18 77802175 77802175 1 + C T UCEC 77802159 + 77802139 77802179 41 CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGAT CTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCATCGAT < 41bp 1 0.470126009078575 1 0.163528144359589 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RBFA ENSG00000101546 CDS Human protein_coding chr18:77802159 chr18:77802175 nonsynonymous SNV 0.045 1 37 hm5C_associated_SNPs_43888 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_42823 DeepMRMD:1;iRNA_m5C:0.999536712157816 42824 chr19 39125658 39125658 1 + C T UCEC 39125675 + 39125655 39125695 41 GAGCAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCT GAGTAAATACGGCTGGAGTGCCGACGAGTCGGGGCAGATCT < 41bp 1 0.241397922529133 1 0.409604787826538 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3K ENSG00000178982 CDS Human protein_coding chr19:39125675 chr19:39125658 synonymous SNV . 0 4 hm5C_associated_SNPs_43891 0 0 1 0 1 Cytosol 1 0.500231601827994 1 0.999536796344013 hm5C_site_42824 DeepMRMD:1;iRNA_m5C:0.999536796344013 42825 chr1 180034363 180034363 1 + C T UCEC 180034360 + 180034340 180034380 41 ATCTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAA ATCTCCAGCAGTGAAACTAGCAGTATTATGCAGAAACTGAA < 41bp 1 0.361856372694777 1 0.104857474565506 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP350 ENSG00000135837 CDS Human protein_coding chr1:180034360 chr1:180034363 synonymous SNV . 0 24 hm5C_associated_SNPs_43892 0 0 1 0 1 Nucleus 1 0.500231643958516 1 0.999536712082969 hm5C_site_42825 DeepMRMD:1;iRNA_m5C:0.999536712082969 42826 chr5 34929981 34929981 1 + C T UCEC 34929965 + 34929945 34929985 41 GCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCTCAAGA GCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCTTAAGA < 41bp 1 0.623846038877604 1 0.46982616186142 experiment 0.752307922244791 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DNAJC21 ENSG00000168724 CDS Human protein_coding chr5:34929965 chr5:34929981 synonymous SNV . 0 37 hm5C_associated_SNPs_43893 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_42826 DeepMRMD:1;iRNA_m5C:0.999536712157812 42827 chr10 76788898 76788898 1 + T C UCEC 76788889 + 76788869 76788909 41 GGATGACAGCCACATGGAGTCTGCCGAAGTGGAGAAGGAAG GGATGACAGCCACATGGAGTCTGCCGAAGCGGAGAAGGAAG < 41bp 1 0.354792978782887 1 0.173768490552902 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KAT6B ENSG00000156650 CDS Human protein_coding chr10:76788889 chr10:76788898 nonsynonymous SNV 0.030 0 30 hm5C_associated_SNPs_43894 0 0 1 0 0 Nucleus 1 0.500231082474667 1 0.999537835050666 hm5C_site_42827 DeepMRMD:1;iRNA_m5C:0.999537835050666 42828 chr10 76788898 76788898 1 + T C UCEC 76788892 + 76788872 76788912 41 TGACAGCCACATGGAGTCTGCCGAAGTGGAGAAGGAAGAGC TGACAGCCACATGGAGTCTGCCGAAGCGGAGAAGGAAGAGC < 41bp 1 0.240134530698476 1 0.309283912181854 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KAT6B ENSG00000156650 CDS Human protein_coding chr10:76788892 chr10:76788898 nonsynonymous SNV 0.030 0 27 hm5C_associated_SNPs_43895 0 0 1 0 0 Nucleus 1 0.500231643915616 1 0.999536712168768 hm5C_site_42828 DeepMRMD:1;iRNA_m5C:0.999536712168768 42829 chr17 28712044 28712044 1 + G A UCEC 28712048 + 28712028 28712068 41 GCATGGTGGCTCAGTGGTAGCAAGCTATCCTTTTGATGATT GCATGGTGGCTCAGTGATAGCAAGCTATCCTTTTGATGATT < 41bp 1 0.478463616533444 1 0.328896284103394 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28712048 chr17:28712044 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_43896 0 0 1 0 1 Nucleus 1 0.500231638742462 1 0.999536722515077 hm5C_site_42829 DeepMRMD:1;iRNA_m5C:0.999536722515077 42830 chr17 46128598 46128598 1 + C T UCEC 46128578 + 46128558 46128598 41 GGACGTGGATACTTACCTGACCTCACAGCTTCCCCCACTCC GGACGTGGATACTTACCTGACCTCACAGCTTCCCCCACTCT < 41bp 1 0.164191451853859 1 0.0193630456924438 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128578 chr17:46128598 nonsynonymous SNV 0.990 4 41 hm5C_associated_SNPs_43897 0 0 1 0 0 Ribosome 1 0.500231572734591 1 0.999536854530817 hm5C_site_42830 DeepMRMD:1;iRNA_m5C:0.999536854530817 42831 chr17 46128598 46128598 1 + C T UCEC 46128592 + 46128572 46128612 41 ACCTGACCTCACAGCTTCCCCCACTCCGGGAGATCATCCTG ACCTGACCTCACAGCTTCCCCCACTCTGGGAGATCATCCTG < 41bp 1 0.190208714925943 1 0.0524689257144928 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128592 chr17:46128598 nonsynonymous SNV 0.990 4 27 hm5C_associated_SNPs_43898 0 0 1 0 0 Ribosome 1 0.500231643920854 1 0.999536712158293 hm5C_site_42831 DeepMRMD:1;iRNA_m5C:0.999536712158293 42832 chr9 71851981 71851981 1 + G A UCEC 71851967 + 71851947 71851987 41 AGGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCGGGAAGA AGGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCAGGAAGA < 41bp 1 0.43619529996068 1 0.353593647480011 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71851967 chr9:71851981 nonsynonymous SNV 0.997 4 35 hm5C_associated_SNPs_43899 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42832 DeepMRMD:1;iRNA_m5C:0.999536712157815 42833 chr17 40766007 40766007 1 + G A UCEC 40765994 + 40765974 40766014 41 CTTCCTCATGACCGGCTACACCCCTCTCACTACGGACCAGT CTTCCTCATGACCGGCTACACCCCTCTCACTACAGACCAGT < 41bp 1 0.165901418311342 1 0.0427419543266296 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765994 chr17:40766007 synonymous SNV . 0 34 hm5C_associated_SNPs_43901 0 0 1 0 1 Ribosome 1 0.500230541970209 1 0.999538916059582 hm5C_site_42833 DeepMRMD:1;iRNA_m5C:0.999538916059582 42834 chrX 153688733 153688733 1 + C A UCEC 153688731 + 153688711 153688751 41 TGCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGC TGCGGGCCCATGTCACGGGGCCAGTCGAGGACAACGCTCGC < 41bp 1 0.0586601883690816 1 0.102600961923599 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688731 chrX:153688733 synonymous SNV . 0 23 hm5C_associated_SNPs_43902 0 0 0 0 0 Endoplasmic reticulum 1 0.500251655316299 1 0.999496689367402 hm5C_site_42834 DeepMRMD:1;iRNA_m5C:0.999496689367402 42835 chrX 153688733 153688733 1 + C A UCEC 153688732 + 153688712 153688752 41 GCGGGCCCATGTCACGGGGCCCGTCGAGGACAACGCTCGCT GCGGGCCCATGTCACGGGGCCAGTCGAGGACAACGCTCGCT < 41bp 1 0.0755187243403098 1 0.119661390781403 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688732 chrX:153688733 synonymous SNV . 0 22 hm5C_associated_SNPs_43903 0 0 0 0 0 Endoplasmic reticulum 1 0.50023164386056 1 0.99953671227888 hm5C_site_42835 DeepMRMD:1;iRNA_m5C:0.99953671227888 42836 chr15 64429090 64429090 1 + G A UCEC 64429070 + 64429050 64429090 41 TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAAGAACCACG TGTCTCCTAGAAAGAGAAATCCAAGGACTTCAAGAACCACA < 41bp 1 0.140955871417489 1 0.337111473083496 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX1 ENSG00000028528 CDS Human protein_coding chr15:64429070 chr15:64429090 nonsynonymous SNV 0.987 4 41 hm5C_associated_SNPs_43904 0 0 1 0 2 Ribosome 1 0.500233028204203 1 0.999533943591595 hm5C_site_42836 DeepMRMD:1;iRNA_m5C:0.999533943591595 42837 chr12 64814295 64814295 1 + T C UCEC 64814299 + 64814279 64814319 41 CTGGGTTTTTCAGCATTGACCAGGTTGGTAAATTTATATAA CTGGGTTTTTCAGCATCGACCAGGTTGGTAAATTTATATAA < 41bp 1 0.477513132765199 1 0.826928317546844 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control XPOT ENSG00000184575 CDS Human protein_coding chr12:64814299 chr12:64814295 synonymous SNV . 0 17 hm5C_associated_SNPs_43905 0 0 1 0 1 Ribosome 1 0.500231296707368 0.346143364906312 0.999537406585264 hm5C_site_42837 DeepMRMD:0.346143364906312;iRNA_m5C:0.999537406585264 42838 chr2 27438251 27438251 1 + C G UCEC 27438244 + 27438224 27438264 41 GTCCAAACTTTCATCAGGCACATACCACTGTCATCATGTAA GTCCAAACTTTCATCAGGCACATACCAGTGTCATCATGTAA < 41bp 1 0.0590021536504094 1 0.075777679681778 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ATRAID ENSG00000138085 CDS Human protein_coding chr2:27438244 chr2:27438251 nonsynonymous SNV 0.442 0 28 hm5C_associated_SNPs_43906 0 0 1 0 2 Endoplasmic reticulum 1 0.500233110919077 1 0.999533778161847 hm5C_site_42838 DeepMRMD:1;iRNA_m5C:0.999533778161847 42839 chr19 48259809 48259809 1 + C T UCEC 48259799 + 48259779 48259819 41 CTGTAGCCCGAGGGCAACATCCTTCGAGACCGGTTCAAGAG CTGTAGCCCGAGGGCAACATCCTTCGAGACTGGTTCAAGAG < 41bp 1 0.0424848185497648 1 0.136503010988235 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259799 chr19:48259809 nonsynonymous SNV 0.711 2 31 hm5C_associated_SNPs_43907 0 0 1 0 2 unknown 1 0.50023163720055 1 0.9995367255989 hm5C_site_42839 DeepMRMD:1;iRNA_m5C:0.9995367255989 42840 chr17 28958936 28958936 1 + C T UCEC 28958929 + 28958909 28958949 41 TGGGAGTGAGCAGCTAGACACCAATGACGAGAGTGATGTTA TGGGAGTGAGCAGCTAGACACCAATGATGAGAGTGATGTTA < 41bp 1 0.116163714380191 1 0.0689842402935028 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28958929 chr17:28958936 . . 0 28 hm5C_associated_SNPs_43909 0 0 1 0 2 unknown 1 0.500231948783355 1 0.999536102433291 hm5C_site_42840 DeepMRMD:1;iRNA_m5C:0.999536102433291 42841 chr1 27089624 27089624 1 + C T UCEC 27089608 + 27089588 27089628 41 ACCTTATGGCACACTCCCTCCAGGGAGGATGAGTCACGCCT ACCTTATGGCACACTCCCTCCAGGGAGGATGAGTCATGCCT < 41bp 1 0.604652912443713 1 0.911476016044617 experiment 0.790694175112573 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARID1A ENSG00000117713 CDS Human protein_coding chr1:27089608 chr1:27089624 synonymous SNV . 0 37 hm5C_associated_SNPs_43910 0 0 1 0 0 Nucleus 1 0.500231643933307 0.177047967910766 0.999536712133385 hm5C_site_42841 DeepMRMD:0.177047967910766;iRNA_m5C:0.999536712133385 42842 chr20 44037086 44037086 1 + T C UCEC 44037094 + 44037074 44037114 41 TACTTGTTTTGCTCCTCTACCCGCAGGAGCTGACATGGACC TACTTGTTTTGCCCCTCTACCCGCAGGAGCTGACATGGACC < 41bp 1 0.465932193114217 1 0.598611414432526 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DBNDD2 ENSG00000244274 CDS Human protein_coding chr20:44037094 chr20:44037086 synonymous SNV . 0 13 hm5C_associated_SNPs_43911 0 0 1 0 0 Endoplasmic reticulum 1 0.500231647101622 0.802777171134948 0.999536705796755 hm5C_site_42842 DeepMRMD:0.802777171134948;iRNA_m5C:0.999536705796755 42843 chr10 104678371 104678371 1 + C T UCEC 104678357 + 104678337 104678377 41 AGCGCTCGCGGCCGGGGGATCCTGCAGGCGGCTGCGGGGCG AGCGCTCGCGGCCGGGGGATCCTGCAGGCGGCTGTGGGGCG < 41bp 1 0.303169754287582 1 0.602774798870087 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104678357 chr10:104678371 nonsynonymous SNV 0.473 1 35 hm5C_associated_SNPs_43912 0 0 1 0 0 Ribosome 1 0.500231668633546 0.794450402259826 0.999536662732907 hm5C_site_42843 DeepMRMD:0.794450402259826;iRNA_m5C:0.999536662732907 42844 chr20 25205883 25205883 1 + C G UCEC 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGACACAGCCGCAGAGCAGCCCCTTCTGATGCATGGACCT < 41bp 1 0.188946519320321 1 0.0639784038066864 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205883 stopgain 0.003 0 29 hm5C_associated_SNPs_43913 0 0 1 0 3 Endoplasmic reticulum 1 0.500231614665025 1 0.99953677066995 hm5C_site_42844 DeepMRMD:1;iRNA_m5C:0.99953677066995 42845 chr2 109347900 109347900 1 + C T UCEC 109347887 + 109347867 109347907 41 AAAATACTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAA AAAATACTGGCTTGAAAGAGCAGCCAAACTTTTTCCAGGAA < 41bp 1 0.200019263858789 1 0.496517419815063 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347887 chr2:109347900 synonymous SNV . 0 34 hm5C_associated_SNPs_43914 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42845 DeepMRMD:1;iRNA_m5C:0.999536712157815 42846 chr2 109347900 109347900 1 + C T UCEC 109347890 + 109347870 109347910 41 ATACTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAAGTC ATACTGGCTTGAAAGAGCAGCCAAACTTTTTCCAGGAAGTC < 41bp 1 0.0680981857527072 1 0.263365596532822 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347890 chr2:109347900 synonymous SNV . 0 31 hm5C_associated_SNPs_43915 0 0 1 0 1 Nucleus 1 0.500231433468003 1 0.999537133063993 hm5C_site_42846 DeepMRMD:1;iRNA_m5C:0.999537133063993 42847 chr2 109347900 109347900 1 + C T UCEC 109347895 + 109347875 109347915 41 GGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAAGTCCTGCA GGCTTGAAAGAGCAGCCAAACTTTTTCCAGGAAGTCCTGCA < 41bp 1 0.0688399140034049 1 0.0366297662258148 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347895 chr2:109347900 synonymous SNV . 0 26 hm5C_associated_SNPs_43916 0 0 1 0 1 Nucleus 1 0.500232060267715 1 0.999535879464571 hm5C_site_42847 DeepMRMD:1;iRNA_m5C:0.999535879464571 42848 chr2 109347900 109347900 1 + C T UCEC 109347901 + 109347881 109347921 41 AAAGAGCAGCCAAACTTTTCCCAGGAAGTCCTGCAATTTAT AAAGAGCAGCCAAACTTTTTCCAGGAAGTCCTGCAATTTAT < 41bp 1 0.318793693909242 1 0.529546320438385 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347901 chr2:109347900 synonymous SNV . 0 20 hm5C_associated_SNPs_43917 0 0 1 0 1 Nucleus 1 0.50023164370093 0.94090735912323 0.999536712598139 hm5C_site_42848 DeepMRMD:0.94090735912323;iRNA_m5C:0.999536712598139 42849 chr2 109347900 109347900 1 + C T UCEC 109347902 + 109347882 109347922 41 AAGAGCAGCCAAACTTTTCCCAGGAAGTCCTGCAATTTATA AAGAGCAGCCAAACTTTTTCCAGGAAGTCCTGCAATTTATA < 41bp 1 0.614317051145823 1 0.845586538314819 experiment 0.771365897708354 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347902 chr2:109347900 synonymous SNV . 0 19 hm5C_associated_SNPs_43918 0 0 1 0 1 Nucleus 1 0.500231643921144 0.308826923370362 0.999536712157711 hm5C_site_42849 DeepMRMD:0.308826923370362;iRNA_m5C:0.999536712157711 42850 chr2 109347900 109347900 1 + C T UCEC 109347910 + 109347890 109347930 41 CCAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAG CCAAACTTTTTCCAGGAAGTCCTGCAATTTATAAACTAAAG < 41bp 1 0.04338749911607 1 0.194399684667587 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347910 chr2:109347900 synonymous SNV . 0 11 hm5C_associated_SNPs_43919 0 0 1 0 1 Nucleus 1 0.500231643921081 1 0.999536712157837 hm5C_site_42850 DeepMRMD:1;iRNA_m5C:0.999536712157837 42851 chr2 109347900 109347900 1 + C T UCEC 109347911 + 109347891 109347931 41 CAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAGG CAAACTTTTTCCAGGAAGTCCTGCAATTTATAAACTAAAGG < 41bp 1 0.291331717885334 1 0.287665963172913 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347911 chr2:109347900 synonymous SNV . 0 10 hm5C_associated_SNPs_43920 0 0 1 0 1 Nucleus 1 0.5002316439211 1 0.9995367121578 hm5C_site_42851 DeepMRMD:1;iRNA_m5C:0.9995367121578 42852 chr6 158497759 158497759 1 + C T UCEC 158497757 + 158497737 158497777 41 CAAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTG CAAGCGACAAATGCCGCACCCCTGCCTGGACAGACAGGGTG < 41bp 1 0.0619838000040266 1 0.0717436075210571 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497757 chr6:158497759 synonymous SNV . 0 23 hm5C_associated_SNPs_43921 0 0 1 0 1 Cytosol 1 0.500231628956519 1 0.999536742086961 hm5C_site_42852 DeepMRMD:1;iRNA_m5C:0.999536742086961 42853 chr6 158497759 158497759 1 + C T UCEC 158497758 + 158497738 158497778 41 AAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTGC AAGCGACAAATGCCGCACCCCTGCCTGGACAGACAGGGTGC < 41bp 1 0.318501407280182 1 0.426237314939499 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497758 chr6:158497759 synonymous SNV . 0 22 hm5C_associated_SNPs_43922 0 0 1 0 1 Cytosol 1 0.500231752840472 1 0.999536494319055 hm5C_site_42853 DeepMRMD:1;iRNA_m5C:0.999536494319055 42854 chr12 22214296 22214296 1 + C T UCEC 22214315 + 22214295 22214335 41 ACATTTATGTATCAGGAGACCAAAAAGAAATAATATCTTAT ATATTTATGTATCAGGAGACCAAAAAGAAATAATATCTTAT < 41bp 1 0.368649267803194 1 0.63706636428833 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22214315 chr12:22214296 synonymous SNV . 0 2 hm5C_associated_SNPs_43923 0 0 1 0 2 Ribosome 1 0.500231643923189 0.72586727142334 0.999536712153623 hm5C_site_42854 DeepMRMD:0.72586727142334;iRNA_m5C:0.999536712153623 42855 chr9 133738156 133738156 1 + G A UCEC 133738171 + 133738151 133738191 41 TCTACGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAG TCTACATCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAG < 41bp 1 0.109479461351639 1 0.170564502477646 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133738171 chr9:133738156 nonsynonymous SNV 0.986 2 6 hm5C_associated_SNPs_43924 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164411355 1 0.9995367117729 hm5C_site_42855 DeepMRMD:1;iRNA_m5C:0.9995367117729 42856 chr5 131973808 131973808 1 + G A UCEC 131973793 + 131973773 131973813 41 ATATTGAATACATAGAAATACGGTCTGATGCCGATGAAAAT ATATTGAATACATAGAAATACGGTCTGATGCCGATAAAAAT < 41bp 1 0.0830372632840123 1 0.153104960918427 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131973793 chr5:131973808 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_43925 0 0 1 0 1 Cytosol 1 0.500231643921106 1 0.999536712157787 hm5C_site_42856 DeepMRMD:1;iRNA_m5C:0.999536712157787 42857 chr7 77214887 77214887 1 + G C UCEC 77214877 + 77214857 77214897 41 TAGATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAG TAGATCATTGTAATGGCCTGCCGAGAATTTCAGATGGGAAG < 41bp 1 0.135545061589758 1 0.562607824802399 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77214877 chr7:77214887 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_43926 0 0 1 1 1 Ribosome 1 0.50023164395474 0.874784350395202 0.999536712090521 hm5C_site_42857 DeepMRMD:0.874784350395202;iRNA_m5C:0.999536712090521 42858 chr12 6878783 6878783 1 + G A UCEC 6878771 + 6878751 6878791 41 CCTCTTTCTCCTTTGCAGGACCTGAAGGAGAAGAAGGAGAA CCTCTTTCTCCTTTGCAGGACCTGAAGGAGAAAAAGGAGAA < 41bp 1 0.134695103186978 1 0.0995012819766998 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6878771 chr12:6878783 synonymous SNV . 0 33 hm5C_associated_SNPs_43927 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_42858 DeepMRMD:1;iRNA_m5C:0.999536712157814 42859 chr12 6878783 6878783 1 + G A UCEC 6878772 + 6878752 6878792 41 CTCTTTCTCCTTTGCAGGACCTGAAGGAGAAGAAGGAGAAG CTCTTTCTCCTTTGCAGGACCTGAAGGAGAAAAAGGAGAAG < 41bp 1 0.520757545229516 1 0.371726632118225 experiment 0.958484909540967 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMS ENSG00000159335 CDS Human protein_coding chr12:6878772 chr12:6878783 synonymous SNV . 0 32 hm5C_associated_SNPs_43928 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42859 DeepMRMD:1;iRNA_m5C:0.999536712157815 42860 chr2 36668430 36668430 1 + T C UCEC 36668446 + 36668426 36668466 41 CCGCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT CCGCCGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATT < 41bp 1 0.671599463965713 1 0.686736583709717 experiment 0.656801072068573 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668446 chr2:36668430 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_43929 0 0 1 0 1 Nucleus 1 0.500231643921093 0.626526832580566 0.999536712157814 hm5C_site_42860 DeepMRMD:0.626526832580566;iRNA_m5C:0.999536712157814 42861 chr2 36668430 36668430 1 + T C UCEC 36668448 + 36668428 36668468 41 GCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATTCT GCCGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATTCT < 41bp 1 0.502154955495695 1 0.427867740392685 experiment 0.995690089008609 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36668448 chr2:36668430 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_43930 0 0 1 0 1 Nucleus 1 0.500231643929429 1 0.999536712141142 hm5C_site_42861 DeepMRMD:1;iRNA_m5C:0.999536712141142 42862 chr13 97928589 97928589 1 + T A UCEC 97928608 + 97928588 97928628 41 ATGCAAATTTGCTCATCCCCCCAAAAGTTGTCAGGTTGAAA AAGCAAATTTGCTCATCCCCCCAAAAGTTGTCAGGTTGAAA < 41bp 1 0.202007015234006 1 0.353849023580551 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MBNL2 ENSG00000139793 CDS Human protein_coding chr13:97928608 chr13:97928589 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_43931 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42862 DeepMRMD:1;iRNA_m5C:0.999536712157815 42863 chr1 32782309 32782309 1 + G A UCEC 32782298 + 32782278 32782318 41 GCCAATGCTGAGGAGATGACCAAGTACCACAGCGATGACTA GCCAATGCTGAGGAGATGACCAAGTACCACAACGATGACTA < 41bp 1 0.603469107853876 1 0.402974903583527 experiment 0.793061784292247 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32782298 chr1:32782309 nonsynonymous SNV 0.961 2 32 hm5C_associated_SNPs_43932 0 0 1 0 2 Cytosol 1 0.500231575529923 1 0.999536848940153 hm5C_site_42863 DeepMRMD:1;iRNA_m5C:0.999536848940153 42864 chr11 61545217 61545217 1 + C T UCEC 61545235 + 61545215 61545255 41 ACCGAGCAATTGAAGAGGATCTCGCGCATGCGGCTGGTGCA ACTGAGCAATTGAAGAGGATCTCGCGCATGCGGCTGGTGCA < 41bp 1 0.399093195255086 1 0.415896505117416 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYRF ENSG00000124920 CDS Human protein_coding chr11:61545235 chr11:61545217 synonymous SNV . 0 3 hm5C_associated_SNPs_43933 0 0 1 0 1 chromatin 1 0.500233798064337 1 0.999532403871327 hm5C_site_42864 DeepMRMD:1;iRNA_m5C:0.999532403871327 42865 chr1 153750691 153750691 1 + C T UCEC 153750688 + 153750668 153750708 41 TGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAGCGT TGGCAGTGGGCAGCGGGCTGCGCTCAGATACCTGGGAGCGT < 41bp 1 0.232739395707226 1 0.174329578876495 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750688 chr1:153750691 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_43935 0 0 0 0 1 nucleoplasm 1 0.500232005545392 1 0.999535988909216 hm5C_site_42865 DeepMRMD:1;iRNA_m5C:0.999535988909216 42866 chr17 38450694 38450694 1 + T C UCEC 38450687 + 38450667 38450707 41 CTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCT CTAGAGAAAAATGTAAGCCACAGCTGTCGAACTTCCCACCT < 41bp 1 0.560661174843277 1 0.372536599636078 experiment 0.878677650313446 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450687 chr17:38450694 nonsynonymous SNV 0.990 3 28 hm5C_associated_SNPs_43937 0 0 1 0 2 Nucleus 1 0.50023164392466 1 0.99953671215068 hm5C_site_42866 DeepMRMD:1;iRNA_m5C:0.99953671215068 42867 chr15 77756709 77756709 1 + G A UCEC 77756689 + 77756669 77756709 41 GTTGCTTCAGAGTGAGTCTTCAAATGCAGCAGAAGGCAATG GTTGCTTCAGAGTGAGTCTTCAAATGCAGCAGAAGGCAATA < 41bp 1 0.48873683922215 1 0.272305756807327 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HMG20A ENSG00000140382 CDS Human protein_coding chr15:77756689 chr15:77756709 nonsynonymous SNV 0.844 3 41 hm5C_associated_SNPs_43938 0 0 1 0 1 Ribosome 1 0.500231748030646 1 0.999536503938708 hm5C_site_42867 DeepMRMD:1;iRNA_m5C:0.999536503938708 42868 chr10 103901204 103901204 1 + G C UCEC 103901206 + 103901186 103901226 41 GTTCCACATGTACCTATGGGCCCTTGGGATGGGGCCCAGGG GTTCCACATGTACCTATGCGCCCTTGGGATGGGGCCCAGGG < 41bp 1 0.0912286661561218 1 0.0184653103351593 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901206 chr10:103901204 nonsynonymous SNV 0.977 2 19 hm5C_associated_SNPs_43939 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42868 DeepMRMD:1;iRNA_m5C:0.999536712157815 42869 chr10 103901204 103901204 1 + G C UCEC 103901207 + 103901187 103901227 41 TTCCACATGTACCTATGGGCCCTTGGGATGGGGCCCAGGGC TTCCACATGTACCTATGCGCCCTTGGGATGGGGCCCAGGGC < 41bp 1 0.0533050030500608 1 0.0410152971744537 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901207 chr10:103901204 nonsynonymous SNV 0.977 2 18 hm5C_associated_SNPs_43940 0 0 1 0 0 Cytosol 1 0.500231643922913 1 0.999536712154174 hm5C_site_42869 DeepMRMD:1;iRNA_m5C:0.999536712154174 42870 chr10 103901204 103901204 1 + G C UCEC 103901208 + 103901188 103901228 41 TCCACATGTACCTATGGGCCCTTGGGATGGGGCCCAGGGCC TCCACATGTACCTATGCGCCCTTGGGATGGGGCCCAGGGCC < 41bp 1 0.445726002390636 1 0.141625344753265 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901208 chr10:103901204 nonsynonymous SNV 0.977 2 17 hm5C_associated_SNPs_43941 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42870 DeepMRMD:1;iRNA_m5C:0.999536712157815 42871 chr10 103901204 103901204 1 + G C UCEC 103901220 + 103901200 103901240 41 TATGGGCCCTTGGGATGGGGCCCAGGGCCTCAACATGCTCC TATGCGCCCTTGGGATGGGGCCCAGGGCCTCAACATGCTCC < 41bp 1 0.157248740404663 1 0.262018799781799 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901220 chr10:103901204 nonsynonymous SNV 0.977 2 5 hm5C_associated_SNPs_43942 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42871 DeepMRMD:1;iRNA_m5C:0.999536712157815 42872 chr10 103901204 103901204 1 + G C UCEC 103901221 + 103901201 103901241 41 ATGGGCCCTTGGGATGGGGCCCAGGGCCTCAACATGCTCCA ATGCGCCCTTGGGATGGGGCCCAGGGCCTCAACATGCTCCA < 41bp 1 0.345546450959953 1 0.69041121006012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901221 chr10:103901204 nonsynonymous SNV 0.977 2 4 hm5C_associated_SNPs_43943 0 0 1 0 0 Cytosol 1 0.500231643712103 0.61917757987976 0.999536712575793 hm5C_site_42872 DeepMRMD:0.61917757987976;iRNA_m5C:0.999536712575793 42873 chr10 103901204 103901204 1 + G C UCEC 103901222 + 103901202 103901242 41 TGGGCCCTTGGGATGGGGCCCAGGGCCTCAACATGCTCCAT TGCGCCCTTGGGATGGGGCCCAGGGCCTCAACATGCTCCAT < 41bp 1 0.621502495481291 1 0.74058324098587 experiment 0.756995009037418 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103901222 chr10:103901204 nonsynonymous SNV 0.977 2 3 hm5C_associated_SNPs_43944 0 0 1 0 0 Cytosol 1 0.500231643921092 0.51883351802826 0.999536712157815 hm5C_site_42873 DeepMRMD:0.51883351802826;iRNA_m5C:0.999536712157815 42874 chr13 88329608 88329608 1 + C A UCEC 88329589 + 88329569 88329609 41 GTTGAATAGCACCGGGGCCCCCGCGAGCTTGGGCGCAGGCG GTTGAATAGCACCGGGGCCCCCGCGAGCTTGGGCGCAGGAG < 41bp 1 0.641681648296419 1 0.408765912055969 experiment 0.716636703407161 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88329589 chr13:88329608 synonymous SNV . 0 40 hm5C_associated_SNPs_43945 0 0 0 0 0 nucleus 1 0.500232186313143 1 0.999535627373714 hm5C_site_42874 DeepMRMD:1;iRNA_m5C:0.999535627373714 42875 chr2 158152285 158152285 1 + G A UCEC 158152276 + 158152256 158152296 41 GTAGAAAGAAAGTGGCCTGTCCAGTAATCGAAGTCATCAAT GTAGAAAGAAAGTGGCCTGTCCAGTAATCAAAGTCATCAAT < 41bp 1 0.2478840713104 1 0.194105625152588 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158152276 chr2:158152285 nonsynonymous SNV 0.997 4 30 hm5C_associated_SNPs_43946 0 0 0 0 1 Exosome 1 0.50023509245653 1 0.99952981508694 hm5C_site_42875 DeepMRMD:1;iRNA_m5C:0.99952981508694 42876 chr21 34634952 34634952 1 + A G UCEC 34634957 + 34634937 34634977 41 AACTCCTGAGCTCAAACAGTCGTCCTGCCTAAGCTTCCCCA AACTCCTGAGCTCAAGCAGTCGTCCTGCCTAAGCTTCCCCA < 41bp 1 0.0864923444170237 1 0.339205265045166 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34634957 chr21:34634952 synonymous SNV . 0 16 hm5C_associated_SNPs_43947 0 0 1 0 1 Ribosome 1 0.500231298679921 1 0.999537402640158 hm5C_site_42876 DeepMRMD:1;iRNA_m5C:0.999537402640158 42877 chr21 34634952 34634952 1 + A G UCEC 34634961 + 34634941 34634981 41 CCTGAGCTCAAACAGTCGTCCTGCCTAAGCTTCCCCAGTAG CCTGAGCTCAAGCAGTCGTCCTGCCTAAGCTTCCCCAGTAG < 41bp 1 0.302521572853914 1 0.222620189189911 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34634961 chr21:34634952 synonymous SNV . 0 12 hm5C_associated_SNPs_43948 0 0 1 0 1 Ribosome 1 0.500231643906153 1 0.999536712187695 hm5C_site_42877 DeepMRMD:1;iRNA_m5C:0.999536712187695 42878 chrX 49103967 49103967 1 + C T UCEC 49103974 + 49103954 49103994 41 TAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGATGTGCC TAGGAGCCCCAGGTCCAGGCCACTCAGGTGTCAGATGTGCC < 41bp 1 0.0753730372432256 1 0.0346382856369019 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103974 chrX:49103967 nonsynonymous SNV 0.961 0 14 hm5C_associated_SNPs_43949 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_42878 DeepMRMD:1;iRNA_m5C:0.999536712157815 42879 chr1 16257975 16257975 1 + G A UCEC 16257979 + 16257959 16257999 41 TTTTCCCAGGCAGAGAGCAACGTAGATCCAGAGCCTGACAG TTTTCCCAGGCAGAGAACAACGTAGATCCAGAGCCTGACAG < 41bp 1 0.271018742106689 1 0.133114159107208 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPEN ENSG00000065526 CDS Human protein_coding chr1:16257979 chr1:16257975 nonsynonymous SNV 0.057 1 17 hm5C_associated_SNPs_43950 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_42879 DeepMRMD:1;iRNA_m5C:0.999536712157815 42880 chr10 75871856 75871856 1 + A G UCEC 75871841 + 75871821 75871861 41 TGGCCGCGGCTCAGTCCTTGCATCGGGAAGCTACCAAGTGG TGGCCGCGGCTCAGTCCTTGCATCGGGAAGCTACCGAGTGG < 41bp 1 0.393644539515876 1 0.196299463510513 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VCL ENSG00000035403 CDS Human protein_coding chr10:75871841 chr10:75871856 nonsynonymous SNV 1.000 2 36 hm5C_associated_SNPs_43951 0 0 0 0 1 Nucleus 1 0.500231643919266 1 0.999536712161468 hm5C_site_42880 DeepMRMD:1;iRNA_m5C:0.999536712161468 42881 chr1 37947347 37947347 1 + C T UCEC 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATCGTGGTTTCCAATGACACATACCGTGACCTCCAAGG < 41bp 1 0.352443447288581 1 0.163795709609985 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947347 synonymous SNV . 0 18 hm5C_associated_SNPs_43952 0 0 0 0 1 Nucleus 1 0.500231643921139 1 0.999536712157722 hm5C_site_42881 DeepMRMD:1;iRNA_m5C:0.999536712157722 42882 chr1 37947347 37947347 1 + C T UCEC 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATCGTGGTTTCCAATGACACATACCGTGACCTCCAAGGCG < 41bp 1 0.150716868283163 1 0.0808469653129578 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947347 synonymous SNV . 0 16 hm5C_associated_SNPs_43953 0 0 0 0 1 Nucleus 1 0.500231643136488 1 0.999536713727024 hm5C_site_42882 DeepMRMD:1;iRNA_m5C:0.999536713727024 42883 chr7 148979307 148979307 1 + G A UCEC 148979322 + 148979302 148979342 41 CAACCGCAACCACCACCTGGCCGTGCACATGCAGACCCACG CAACCACAACCACCACCTGGCCGTGCACATGCAGACCCACG < 41bp 1 0.0663086314833299 1 0.0383164286613464 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148979322 chr7:148979307 nonsynonymous SNV 0.990 1 6 hm5C_associated_SNPs_43954 0 0 0 0 0 chromatin 1 0.500312694989265 1 0.999374610021471 hm5C_site_42883 DeepMRMD:1;iRNA_m5C:0.999374610021471 42884 chr3 9408636 9408636 1 + G T UCEC 9408634 + 9408614 9408654 41 ATAACTTATTTGTGGTGGTTCAGGAGTTTCAAGATTACCAG ATAACTTATTTGTGGTGGTTCATGAGTTTCAAGATTACCAG < 41bp 1 0.666216666919164 1 0.164112478494644 experiment 0.667566666161671 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control THUMPD3 ENSG00000134077 CDS Human protein_coding chr3:9408634 chr3:9408636 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_43955 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_42884 DeepMRMD:1;iRNA_m5C:0.999536712157815 42885 chr5 65455065 65455065 1 + C A UCEC 65455056 + 65455036 65455076 41 TGCCTCTGCAGGTAAAATCCCAGAGGAATCCAAAGCCCTCT TGCCTCTGCAGGTAAAATCCCAGAGGAATACAAAGCCCTCT < 41bp 1 0.679950099673905 1 0.809311866760254 experiment 0.64009980065219 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control SREK1 ENSG00000153914 CDS Human protein_coding chr5:65455056 chr5:65455065 nonsynonymous SNV 0.999 0 30 hm5C_associated_SNPs_43956 0 0 1 0 2 Nucleus 1 0.500231643921092 0.381376266479492 0.999536712157815 hm5C_site_42885 DeepMRMD:0.381376266479492;iRNA_m5C:0.999536712157815 42886 chr3 157841661 157841661 1 + G T UCEC 157841658 + 157841638 157841678 41 ATTATATTTTATTTCAGACGCAGGCATCGATCAAGCAGTAG ATTATATTTTATTTCAGACGCAGTCATCGATCAAGCAGTAG < 41bp 1 0.107094297105426 1 0.0326999127864838 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841658 chr3:157841661 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_43957 0 0 1 0 1 Ribosome 1 0.500231644058602 1 0.999536711882796 hm5C_site_42886 DeepMRMD:1;iRNA_m5C:0.999536711882796 42887 chr3 157841661 157841661 1 + G T UCEC 157841665 + 157841645 157841685 41 TTTATTTCAGACGCAGGCATCGATCAAGCAGTAGCTCTTCT TTTATTTCAGACGCAGTCATCGATCAAGCAGTAGCTCTTCT < 41bp 1 0.13816896479047 1 0.343939125537872 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841665 chr3:157841661 nonsynonymous SNV 0.998 4 17 hm5C_associated_SNPs_43958 0 0 1 0 1 Ribosome 1 0.500231642458657 1 0.999536715082685 hm5C_site_42887 DeepMRMD:1;iRNA_m5C:0.999536715082685 42888 chr1 95639445 95639445 1 + G A UCEC 95639425 + 95639405 95639445 41 CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCG CGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCA < 41bp 1 0.270501626515241 1 0.472855150699615 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95639425 chr1:95639445 nonsynonymous SNV 0.987 5 41 hm5C_associated_SNPs_43959 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_42888 DeepMRMD:1;iRNA_m5C:0.999536712157815 42889 chr22 22025335 22025335 1 + G A UCEC 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCAT < 41bp 1 0.562476715045957 1 0.349373579025269 experiment 0.875046569908087 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025335 nonsynonymous SNV 0.853 1 40 hm5C_associated_SNPs_43960 0 0 1 0 2 Cytosol 1 0.500231666894509 1 0.999536666210982 hm5C_site_42889 DeepMRMD:1;iRNA_m5C:0.999536666210982 42890 chr16 22019662 22019662 1 + G A UCEC 22019663 + 22019643 22019683 41 CTCAGGATGTCTCTTTCTGGCCGCCGATATCTTCGCCATCG CTCAGGATGTCTCTTTCTGACCGCCGATATCTTCGCCATCG < 41bp 1 0.513417443271838 1 0.04585200548172 experiment 0.973165113456323 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C16orf52 ENSG00000185716 CDS Human protein_coding chr16:22019663 chr16:22019662 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_43961 0 0 1 1 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_42890 DeepMRMD:1;iRNA_m5C:0.999536712157815 42891 chr5 33459945 33459945 1 + C T UCEC 33459929 + 33459909 33459949 41 CCTTTGAGGTGGAGAAGGAGCTGTTTGCCCTGAAACCCATG CCTTTGAGGTGGAGAAGGAGCTGTTTGCCCTGAAACTCATG < 41bp 1 0.444675870260336 1 0.089888870716095 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TARS ENSG00000113407 CDS Human protein_coding chr5:33459929 chr5:33459945 nonsynonymous SNV 0.985 4 37 hm5C_associated_SNPs_43962 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_42891 DeepMRMD:1;iRNA_m5C:0.999536712157815 42892 chr9 20993279 20993279 1 + G A UCEC 20993260 + 20993240 20993280 41 TTTTTACCCTAGTTCATTGACTGGCTATTCAGCATCATGGA TTTTTACCCTAGTTCATTGACTGGCTATTCAGCATCATGAA < 41bp 1 0.304589612920757 1 0.0510105788707733 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20993260 chr9:20993279 nonsynonymous SNV 0.626 4 40 hm5C_associated_SNPs_43963 0 0 0 0 2 Ribosome 1 0.500231643831287 1 0.999536712337426 hm5C_site_42892 DeepMRMD:1;iRNA_m5C:0.999536712337426 42893 chr2 228162514 228162514 1 + C T UCEC 228162527 + 228162507 228162547 41 GTCTGCCCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT GTCTGCCTGGTGCAATTATCCCTGGCCAGACAGGAAATCGT < 41bp 1 0.178753867748665 1 0.220451056957245 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228162527 chr2:228162514 synonymous SNV . 0 8 hm5C_associated_SNPs_43964 0 0 0 0 1 nucleus 1 0.500231643921102 1 0.999536712157797 hm5C_site_42893 DeepMRMD:1;iRNA_m5C:0.999536712157797 42894 chr1 78001607 78001607 1 + C T UCEC 78001588 + 78001568 78001608 41 TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCG TCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCTG < 41bp 1 0.173160089686509 1 0.0426214933395386 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001588 chr1:78001607 nonsynonymous SNV 0.520 2 40 hm5C_associated_SNPs_43965 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42894 DeepMRMD:1;iRNA_m5C:0.999536712157815 42895 chr1 78001607 78001607 1 + C T UCEC 78001612 + 78001592 78001632 41 CTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACAC CTTCTCCAAAGGAGCTGGAGCAGCCTGCCTGTGGACGACAC < 41bp 1 0.433158637024415 1 0.374099254608154 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AK5 ENSG00000154027 CDS Human protein_coding chr1:78001612 chr1:78001607 nonsynonymous SNV 0.520 2 16 hm5C_associated_SNPs_43966 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_42895 DeepMRMD:1;iRNA_m5C:0.999536712157815 42896 chr21 47970642 47970642 1 + C T UCEC 47970626 + 47970606 47970646 41 TGCCCTCACACCTGTGTTACCAACCTCCCCAAACCTCGTCA TGCCCTCACACCTGTGTTACCAACCTCCCCAAACCTTGTCA < 41bp 1 0.211134664593406 1 0.191577464342117 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DIP2A ENSG00000160305 CDS Human protein_coding chr21:47970626 chr21:47970642 nonsynonymous SNV 0.998 4 37 hm5C_associated_SNPs_43968 0 0 1 0 1 Cytosol 1 0.500231643920879 1 0.999536712158242 hm5C_site_42896 DeepMRMD:1;iRNA_m5C:0.999536712158242 42897 chr22 19707367 19707367 1 + C A UCEC 19707377 + 19707357 19707397 41 GGTCCACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGA GGTCCACAGCATCTTCCTGACAGACTTGTACAAGGACCGGA < 41bp 1 0.257819061709238 1 0.089176207780838 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707377 chr22:19707367 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_43969 0 0 0 1 1 chromatin 1 0.500231643156149 1 0.999536713687701 hm5C_site_42897 DeepMRMD:1;iRNA_m5C:0.999536713687701 42898 chr13 52293441 52293441 1 + C T UCEC 52293456 + 52293436 52293476 41 GGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA GGCAGTGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCA < 41bp 1 0.556659225355364 1 0.952416718006134 experiment 0.886681549289272 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52293456 chr13:52293441 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_43971 0 0 1 0 1 Cytosol 1 0.500231643923753 0.0951665639877319 0.999536712152495 hm5C_site_42898 DeepMRMD:0.0951665639877319;iRNA_m5C:0.999536712152495 42899 chr20 61291813 61291813 1 + G A UCEC 61291833 + 61291813 61291853 41 GGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT AGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGT < 41bp 1 0.415884045268932 1 0.287621378898621 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291833 chr20:61291813 nonsynonymous SNV 0.967 4 1 hm5C_associated_SNPs_43972 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643938662 1 0.999536712122676 hm5C_site_42899 DeepMRMD:1;iRNA_m5C:0.999536712122676 42900 chr1 97771760 97771760 1 + C T UCEC 97771744 - 97771724 97771764 41 TATTGTGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT TATTATGAGCATCGCAAGAGCTGCAAAGGAAGGTAAGAACT < 41bp 1 0.587177665092024 1 0.492677181959152 experiment 0.825644669815951 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DPYD ENSG00000188641 CDS Human protein_coding chr1:97771744 chr1:97771760 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_43973 0 0 0 0 2 cytosol 1 0.500231643915661 1 0.999536712168678 hm5C_site_42900 DeepMRMD:1;iRNA_m5C:0.999536712168678 42901 chr4 153896247 153896247 1 + C T UCEC 153896264 + 153896244 153896284 41 AAACCTCAGGCCTCGGGGGGCCAGGAGGAGGCCCCCAACCC AAATCTCAGGCCTCGGGGGGCCAGGAGGAGGCCCCCAACCC < 41bp 1 0.420647157561645 1 0.711454629898071 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896264 chr4:153896247 nonsynonymous SNV 0.563 0 4 hm5C_associated_SNPs_43974 0 0 0 0 0 Nucleus 1 0.500231687566455 0.577090740203858 0.99953662486709 hm5C_site_42901 DeepMRMD:0.577090740203858;iRNA_m5C:0.99953662486709 42902 chr21 48068522 48068522 1 + G A UCEC 48068504 + 48068484 48068524 41 ACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCGGCC ACTGGGATCATCAGTCTCTTCTGTGCACACTATGCGCGACC < 41bp 1 0.697162347922551 1 0.731600165367126 experiment 0.605675304154898 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068504 chr21:48068522 synonymous SNV 0.008 0 39 hm5C_associated_SNPs_43975 0 0 1 0 1 Cytosol 1 0.500231637769892 0.536799669265748 0.999536724460217 hm5C_site_42902 DeepMRMD:0.536799669265748;iRNA_m5C:0.999536724460217 42903 chr9 110068769 110068769 1 + C A UCEC 110068756 + 110068736 110068776 41 CCACCACCACAACTGTGGCTCAGGCTCCAACCCCTGTCCCT CCACCACCACAACTGTGGCTCAGGCTCCAACCCATGTCCCT < 41bp 1 0.661476398830894 1 0.730191051959991 experiment 0.677047202338212 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD23B ENSG00000119318 CDS Human protein_coding chr9:110068756 chr9:110068769 nonsynonymous SNV 0.112 2 34 hm5C_associated_SNPs_43976 0 0 1 0 0 Ribosome 1 0.500231643910915 0.539617896080018 0.999536712178169 hm5C_site_42903 DeepMRMD:0.539617896080018;iRNA_m5C:0.999536712178169 42904 chr7 127342516 127342516 1 + G A UCEC 127342535 + 127342515 127342555 41 AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT AATGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT < 41bp 1 0.0375202993178555 1 0.0946151614189148 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127342535 chr7:127342516 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_43977 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42904 DeepMRMD:1;iRNA_m5C:0.999536712157815 42905 chr19 803576 803576 1 + C T UCEC 803568 + 803548 803588 41 CCTTCTCTTGCAGCGGGGATCTGACGAGCTTTTCTCTACTT CCTTCTCTTGCAGCGGGGATCTGACGAGTTTTTCTCTACTT < 41bp 1 0.399002705465348 1 0.252969771623611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTBP1 ENSG00000011304 CDS Human protein_coding chr19:803568 chr19:803576 nonsynonymous SNV 0.900 3 29 hm5C_associated_SNPs_43978 0 0 1 0 2 Cytosol 1 0.500231643921075 1 0.999536712157851 hm5C_site_42905 DeepMRMD:1;iRNA_m5C:0.999536712157851 42906 chr2 71780272 71780272 1 + C T UCEC 71780268 + 71780248 71780288 41 CGGGAACAAGTTCGACATGACCTGCCTGCCGCTGGCCTCCA CGGGAACAAGTTCGACATGACCTGTCTGCCGCTGGCCTCCA < 41bp 1 0.194734157204492 1 0.00962042808532715 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71780268 chr2:71780272 synonymous SNV . 0 25 hm5C_associated_SNPs_43979 0 0 0 0 1 Nucleus 1 0.500231643921096 1 0.999536712157808 hm5C_site_42906 DeepMRMD:1;iRNA_m5C:0.999536712157808 42907 chr8 48641588 48641588 1 + G A UCEC 48641587 + 48641567 48641607 41 CCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCA CCTGGACTGCCGCTCAAGACCACAGTGCAGAGTGAAGGTCA < 41bp 1 0.64233905541336 1 0.169075399637222 experiment 0.715321889173279 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPIDR ENSG00000164808 CDS Human protein_coding chr8:48641587 chr8:48641588 synonymous SNV . 0 22 hm5C_associated_SNPs_43980 0 0 1 0 3 Ribosome 1 0.500231821102802 1 0.999536357794397 hm5C_site_42907 DeepMRMD:1;iRNA_m5C:0.999536357794397 42908 chr17 73727996 73727996 1 + T A UCEC 73727993 + 73727973 73728013 41 CAACATCCATCTGAAACCTTCCTTCTCCGACGGCCTCAAGA CAACATCCATCTGAAACCTTCCTACTCCGACGGCCTCAAGA < 41bp 1 0.0111555038327656 1 0.0177028179168701 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73727993 chr17:73727996 nonsynonymous SNV 0.987 5 24 hm5C_associated_SNPs_43981 0 0 0 0 1 Cytosol 1 0.500232062981508 1 0.999535874036983 hm5C_site_42908 DeepMRMD:1;iRNA_m5C:0.999535874036983 42909 chr9 106858491 106858491 1 + C T UCEC 106858485 + 106858465 106858505 41 AATGGGCAGGCTGGTATTACCAAAGCCTCTGTGTCAATCAC AATGGGCAGGCTGGTATTACCAAAGCTTCTGTGTCAATCAC < 41bp 1 0.628075679355909 1 0.55999094247818 experiment 0.743848641288182 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106858485 chr9:106858491 synonymous SNV . 0 27 hm5C_associated_SNPs_43982 0 0 1 0 2 Cytosol 1 0.500231643921098 0.88001811504364 0.999536712157804 hm5C_site_42909 DeepMRMD:0.88001811504364;iRNA_m5C:0.999536712157804 42910 chr3 47374679 47374679 1 + C T UCEC 47374698 + 47374678 47374718 41 ACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG ATGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTG < 41bp 1 0.317239022529273 1 0.224397629499435 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374698 chr3:47374679 synonymous SNV . 0 2 hm5C_associated_SNPs_43983 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42910 DeepMRMD:1;iRNA_m5C:0.999536712157815 42911 chr19 45648517 45648517 1 + C T UCEC 45648504 + 45648484 45648524 41 GCCTGGACCTCGACCGTGAACCCAAGAAAGAGGCGGTGAGC GCCTGGACCTCGACCGTGAACCCAAGAAAGAGGTGGTGAGC < 41bp 1 0.467877089820979 1 0.109747707843781 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP1R37 ENSG00000104866 CDS Human protein_coding chr19:45648504 chr19:45648517 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_43984 0 0 1 0 1 Ribosome 1 0.50023164394408 1 0.999536712111839 hm5C_site_42911 DeepMRMD:1;iRNA_m5C:0.999536712111839 42912 chr19 13054600 13054600 1 + G A UCEC 13054601 + 13054581 13054621 41 GAGGAAGAAGACAAGAAACGCAAAGAGGAGGAGGAGGCAGA GAGGAAGAAGACAAGAAACACAAAGAGGAGGAGGAGGCAGA < 41bp 1 0.583573292191997 1 0.576082766056061 experiment 0.832853415616006 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054601 chr19:13054600 nonsynonymous SNV 0.995 0 20 hm5C_associated_SNPs_43985 0 0 1 1 1 Ribosome 1 0.500231643921102 0.847834467887878 0.999536712157796 hm5C_site_42912 DeepMRMD:0.847834467887878;iRNA_m5C:0.999536712157796 42913 chr12 110765484 110765484 1 + C A UCEC 110765502 + 110765482 110765522 41 AACTAGATGAATTTGGGGAACAGCTTTCCAAAGTCATCTCC AAATAGATGAATTTGGGGAACAGCTTTCCAAAGTCATCTCC < 41bp 1 0.310628001745966 1 0.189018219709396 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110765502 chr12:110765484 nonsynonymous SNV 0.998 3 3 hm5C_associated_SNPs_43986 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42913 DeepMRMD:1;iRNA_m5C:0.999536712157815 42914 chrX 47774347 47774347 1 + C T UCEC 47774348 + 47774328 47774368 41 AAATTTGGAATTAAGCCTTCCCAGAGGAGAATTTCTGGGAA AAATTTGGAATTAAGCCTTTCCAGAGGAGAATTTCTGGGAA < 41bp 1 0.29758287443409 1 0.795053839683533 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF81 ENSG00000197779 CDS Human protein_coding chrX:47774348 chrX:47774347 nonsynonymous SNV 0.636 1 20 hm5C_associated_SNPs_43988 0 0 1 0 1 cytosol 1 0.500231643921024 0.409892320632934 0.999536712157951 hm5C_site_42914 DeepMRMD:0.409892320632934;iRNA_m5C:0.999536712157951 42915 chr17 45773491 45773491 1 + T C UCEC 45773473 + 45773453 45773493 41 GTGTGGGCCGCGGCCCGGCCCTCACCATGGAGTCCATGTTC GTGTGGGCCGCGGCCCGGCCCTCACCATGGAGTCCATGCTC < 41bp 1 0.48402305715165 1 0.0847546458244324 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TBKBP1 ENSG00000198933 CDS Human protein_coding chr17:45773473 chr17:45773491 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_43989 0 0 1 0 0 Cytosol 1 0.500231641711955 1 0.99953671657609 hm5C_site_42915 DeepMRMD:1;iRNA_m5C:0.99953671657609 42916 chr1 76255000 76255000 1 + G A UCEC 76255012 + 76254992 76255032 41 CTAGTATCGGACATGATCCTCATCTTTTATACACTCTTAGT CTAGTATCAGACATGATCCTCATCTTTTATACACTCTTAGT < 41bp 1 0.199563790815449 1 0.0490074157714844 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255012 chr1:76255000 nonsynonymous SNV 0.993 2 9 hm5C_associated_SNPs_43990 0 0 1 2 1 Nucleus 1 0.50023164388867 1 0.999536712222661 hm5C_site_42916 DeepMRMD:1;iRNA_m5C:0.999536712222661 42917 chr1 229783430 229783430 1 + G A UCEC 229783428 + 229783408 229783448 41 TCCCTTTGGACCATCTGAAGCCGCTGGAGTATGGAAGCGTC TCCCTTTGGACCATCTGAAGCCACTGGAGTATGGAAGCGTC < 41bp 1 0.183754693624634 1 0.195274710655212 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control URB2 ENSG00000135763 CDS Human protein_coding chr1:229783428 chr1:229783430 synonymous SNV . 0 23 hm5C_associated_SNPs_43991 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42917 DeepMRMD:1;iRNA_m5C:0.999536712157815 42918 chr3 9517403 9517403 1 + G A UCEC 9517422 + 9517402 9517442 41 GGTATTTTAGCAGCCAGCCACATTCTGGAAACAGCACTGGC GATATTTTAGCAGCCAGCCACATTCTGGAAACAGCACTGGC < 41bp 1 0.0605919666112357 1 0.0587697327136993 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9517422 chr3:9517403 synonymous SNV . 0 2 hm5C_associated_SNPs_43992 0 0 1 0 0 Nucleus 1 0.500235185246037 1 0.999529629507926 hm5C_site_42918 DeepMRMD:1;iRNA_m5C:0.999529629507926 42919 chr1 156255397 156255397 1 + G A UCEC 156255378 + 156255358 156255398 41 CCGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCGT CCGAAGACGATGCCAACCTGCTGCCTGAGAAAGCGGCCCAT < 41bp 1 0.376673850516378 1 0.132362127304077 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255378 chr1:156255397 nonsynonymous SNV 0.604 1 40 hm5C_associated_SNPs_43993 0 0 0 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42919 DeepMRMD:1;iRNA_m5C:0.999536712157815 42920 chr9 134382806 134382806 1 + C T UCEC 134382812 + 134382792 134382832 41 GCTGCCAGCACTCGCGGGGGCCTTGTCGGTCCCCATGGCCT GCTGCCAGCACTCGTGGGGGCCTTGTCGGTCCCCATGGCCT < 41bp 1 0.0576256505741867 1 0.0443802177906036 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control POMT1 ENSG00000130714 CDS Human protein_coding chr9:134382812 chr9:134382806 nonsynonymous SNV 0.002 1 15 hm5C_associated_SNPs_43994 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643920196 1 0.999536712159608 hm5C_site_42920 DeepMRMD:1;iRNA_m5C:0.999536712159608 42921 chr4 184192351 184192351 1 + C A UCEC 184192371 + 184192351 184192391 41 CTGTATTTCAACCAAACCAGCCGTTAGTAGATTCTATAGAC ATGTATTTCAACCAAACCAGCCGTTAGTAGATTCTATAGAC < 41bp 1 0.027796499796573 1 0.0528261661529541 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WWC2 ENSG00000151718 CDS Human protein_coding chr4:184192371 chr4:184192351 nonsynonymous SNV 0.127 0 1 hm5C_associated_SNPs_43995 0 0 1 0 1 Cytosol 1 0.500231643876229 1 0.999536712247542 hm5C_site_42921 DeepMRMD:1;iRNA_m5C:0.999536712247542 42922 chr11 45924108 45924108 1 + C T UCEC 45924098 + 45924078 45924118 41 GCCCCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCGAAT GCCCCGCCTGGGGGTCGGGGCCACTCGCATTGAGACCGAAT < 41bp 1 0.0483045892382938 1 0.146883755922318 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924098 chr11:45924108 stopgain 1.000 1 31 hm5C_associated_SNPs_43996 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643944436 1 0.999536712111128 hm5C_site_42922 DeepMRMD:1;iRNA_m5C:0.999536712111128 42923 chr11 45924108 45924108 1 + C T UCEC 45924099 + 45924079 45924119 41 CCCCGCCTGGGGGTCGGGGCCACTCGCATCGAGACCGAATC CCCCGCCTGGGGGTCGGGGCCACTCGCATTGAGACCGAATC < 41bp 1 0.117591368462966 1 0.242606401443481 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924099 chr11:45924108 stopgain 1.000 1 30 hm5C_associated_SNPs_43997 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921227 1 0.999536712157546 hm5C_site_42923 DeepMRMD:1;iRNA_m5C:0.999536712157546 42924 chr17 78335550 78335550 1 + C T UCEC 78335559 + 78335539 78335579 41 CCCAAGAAGTTCGTGGACATCTTTCAGCAGACTCCTCTGGG CCCAAGAAGTTTGTGGACATCTTTCAGCAGACTCCTCTGGG < 41bp 1 0.0259443480068079 1 0.0501239597797394 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78335559 chr17:78335550 synonymous SNV . 0 12 hm5C_associated_SNPs_43998 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_42924 DeepMRMD:1;iRNA_m5C:0.999536712157815 42925 chr16 29842350 29842350 1 + G A UCEC 29842365 + 29842345 29842385 41 GGCTGGCCCAGGACCCCTTCCCCCTGTACCCAGGGGAGGTG GGCTGACCCAGGACCCCTTCCCCCTGTACCCAGGGGAGGTG < 41bp 1 0.267608275543625 1 0.0953201949596405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29842365 chr16:29842350 nonsynonymous SNV 0.989 0 6 hm5C_associated_SNPs_43999 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_42925 DeepMRMD:1;iRNA_m5C:0.999536712157815 42926 chr18 33289699 33289699 1 + C A UCEC 33289684 + 33289664 33289704 41 TTAGAGACTGCAATGGAAGTCGGTCCCAGCAGTGGCTTCTT TTAGAGACTGCAATGGAAGTCGGTCCCAGCAGTGGATTCTT < 41bp 1 0.378511385794102 1 0.582371890544891 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT1 ENSG00000141429 CDS Human protein_coding chr18:33289684 chr18:33289699 nonsynonymous SNV 1.000 1 36 hm5C_associated_SNPs_44000 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164392341 0.835256218910218 0.99953671215318 hm5C_site_42926 DeepMRMD:0.835256218910218;iRNA_m5C:0.99953671215318 42927 chr19 13930219 13930219 1 + C A UCEC 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CACATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT < 41bp 1 0.10763661219602 1 0.0483099222183228 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930219 nonsynonymous SNV 0.994 4 2 hm5C_associated_SNPs_44001 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157817 hm5C_site_42927 DeepMRMD:1;iRNA_m5C:0.999536712157817 42928 chr20 39795165 39795165 1 + C T UCEC 39795148 + 39795128 39795168 41 GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGCGCG GAGCCTGACCAGAGCACAGGCTGAGCACATGCTAATGTGCG < 41bp 1 0.313372384665807 1 0.171475291252136 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795148 chr20:39795165 nonsynonymous SNV 0.969 5 38 hm5C_associated_SNPs_44002 0 0 1 0 2 Cytosol 1 0.500231643173885 1 0.999536713652229 hm5C_site_42928 DeepMRMD:1;iRNA_m5C:0.999536713652229 42929 chr11 986878 986878 1 + G A UCEC 986875 + 986855 986895 41 CGCTACCTGGCCCTGGAGAGCATGTGCACGCTGGCCAGCTC CGCTACCTGGCCCTGGAGAGCATATGCACGCTGGCCAGCTC < 41bp 1 0.196010040881724 1 0.329761862754822 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AP2A2 ENSG00000183020 CDS Human protein_coding chr11:986875 chr11:986878 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_44004 0 0 1 1 1 Nucleus 1 0.500231643539242 1 0.999536712921516 hm5C_site_42929 DeepMRMD:1;iRNA_m5C:0.999536712921516 42930 chr2 99179976 99179976 1 + G A UCEC 99179968 + 99179948 99179988 41 TACCCGCTGCTGACCACTCTCACCGACTGCGTGGCCATGAT TACCCGCTGCTGACCACTCTCACCGACTACGTGGCCATGAT < 41bp 1 0.653830481460544 1 0.389268189668655 experiment 0.692339037078913 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99179968 chr2:99179976 nonsynonymous SNV 0.998 4 29 hm5C_associated_SNPs_44005 0 0 1 0 1 Ribosome 1 0.500229871021939 1 0.999540257956122 hm5C_site_42930 DeepMRMD:1;iRNA_m5C:0.999540257956122 42931 chr9 139751740 139751740 1 + C T UCEC 139751742 + 139751722 139751762 41 ACCAGCCTGGCTCCCATGCCCAGTACCAGGTGAGGCCTGGC ACCAGCCTGGCTCCCATGTCCAGTACCAGGTGAGGCCTGGC < 41bp 1 0.498797948552884 1 0.607147455215454 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751742 chr9:139751740 nonsynonymous SNV 0.006 0 19 hm5C_associated_SNPs_44006 0 0 1 0 1 chromatin 1 0.500231456011631 0.785705089569092 0.999537087976737 hm5C_site_42931 DeepMRMD:0.785705089569092;iRNA_m5C:0.999537087976737 42932 chr2 74326583 74326583 1 + C T UCEC 74326589 + 74326569 74326609 41 TCCCCCGCGAGGTCCGACGCCTGCCCGAGCCTGCCAAGTCC TCCCCCGCGAGGTCTGACGCCTGCCCGAGCCTGCCAAGTCC < 41bp 1 0.295120257099187 1 0.0657806396484375 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74326589 chr2:74326583 stopgain 0.999 1 15 hm5C_associated_SNPs_44007 0 0 1 0 0 Cytosol 1 0.500220966591127 1 0.999558066817746 hm5C_site_42932 DeepMRMD:1;iRNA_m5C:0.999558066817746 42933 chr16 89985481 89985481 1 + G A UCEC 89985491 + 89985471 89985511 41 CCATGCCTGGGCTGACCTGTCCAGCCAGGGAGAGGGTGTGA CCATGCCTGGACTGACCTGTCCAGCCAGGGAGAGGGTGTGA < 41bp 1 0.380256728649121 1 0.337446302175522 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MC1R ENSG00000256390 ncRNA_exonic Human other chr16:89985491 chr16:89985481 . . 0 11 hm5C_associated_SNPs_44008 0 0 1 0 0 Endoplasmic reticulum 1 0.500231641714087 1 0.999536716571827 hm5C_site_42933 DeepMRMD:1;iRNA_m5C:0.999536716571827 42934 chr20 3802803 3802803 1 + G A UCEC 3802800 + 3802780 3802820 41 CTCATTCACACCTTGAGGGCCCCGAATACTGAGGACACGGG CTCATTCACACCTTGAGGGCCCCAAATACTGAGGACACGGG < 41bp 1 0.194841470043073 1 0.0420036613941193 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3802800 chr20:3802803 synonymous SNV . 0 24 hm5C_associated_SNPs_44009 0 0 1 0 1 Ribosome 1 0.500231645929935 1 0.999536708140129 hm5C_site_42934 DeepMRMD:1;iRNA_m5C:0.999536708140129 42935 chr2 71901335 71901335 1 + C A UCEC 71901331 + 71901311 71901351 41 TCCTCTTCCGGGTCAGGATGCCTTCTGGAGGCTGGACAAGA TCCTCTTCCGGGTCAGGATGCCTTATGGAGGCTGGACAAGA < 41bp 1 0.0805166781928626 1 0.0459335148334503 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYSF ENSG00000135636 CDS Human protein_coding chr2:71901331 chr2:71901335 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_44010 0 0 0 0 2 Nucleus 1 0.500231653741987 1 0.999536692516027 hm5C_site_42935 DeepMRMD:1;iRNA_m5C:0.999536692516027 42936 chr2 234360616 234360616 1 + G A UCEC 234360615 + 234360595 234360635 41 GTATCTCCTTTACAGATGTCCGGGCTGGAATGTCTGGTTCC GTATCTCCTTTACAGATGTCCAGGCTGGAATGTCTGGTTCC < 41bp 1 0.303091086934419 1 0.482422143220901 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKD ENSG00000077044 CDS Human protein_coding chr2:234360615 chr2:234360616 nonsynonymous SNV 0.981 2 22 hm5C_associated_SNPs_44011 0 0 0 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_42936 DeepMRMD:1;iRNA_m5C:0.999536712157814 42937 chr1 150280580 150280580 1 + G A UCEC 150280582 + 150280562 150280602 41 AAAGCTATGAAAGGTGCCGGCGGATCTACAACATGGAAATG AAAGCTATGAAAGGTGCCAGCGGATCTACAACATGGAAATG < 41bp 1 0.493040242934249 1 0.732397198677063 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280582 chr1:150280580 nonsynonymous SNV 0.994 0 19 hm5C_associated_SNPs_44012 0 0 1 0 1 Cytosol 1 0.500231643921428 0.535205602645874 0.999536712157144 hm5C_site_42937 DeepMRMD:0.535205602645874;iRNA_m5C:0.999536712157144 42938 chr10 27469888 27469888 1 + C T UCEC 27469905 + 27469885 27469925 41 CTGCGGTAGACTGGTGGGCACTTGGAGTTTGCTTGTTTGAA CTGTGGTAGACTGGTGGGCACTTGGAGTTTGCTTGTTTGAA < 41bp 1 0.262722434451683 1 0.279394328594208 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MASTL ENSG00000120539 CDS Human protein_coding chr10:27469905 chr10:27469888 nonsynonymous SNV 0.945 3 4 hm5C_associated_SNPs_44013 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_42938 DeepMRMD:1;iRNA_m5C:0.999536712157816 42939 chr16 70165252 70165252 1 + G A UCEC 70165261 + 70165241 70165281 41 GTTAGTATCCCGCTACATGCCTGCGAACACTTCTACCTCCT GTTAGTATCCCACTACATGCCTGCGAACACTTCTACCTCCT < 41bp 1 0.662157588141548 1 0.130303353071213 experiment 0.675684823716905 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDPR ENSG00000090857 CDS Human protein_coding chr16:70165261 chr16:70165252 synonymous SNV . 0 12 hm5C_associated_SNPs_44014 0 0 0 0 2 Nucleus 1 0.500230324964552 1 0.999539350070896 hm5C_site_42939 DeepMRMD:1;iRNA_m5C:0.999539350070896 42940 chr22 32889239 32889239 1 + G T UCEC 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTTGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT < 41bp 1 0.531612790021845 1 0.423166483640671 experiment 0.93677441995631 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889239 nonsynonymous SNV 0.995 4 7 hm5C_associated_SNPs_44015 0 0 1 0 1 chromatin 1 0.500231471628744 1 0.999537056742512 hm5C_site_42940 DeepMRMD:1;iRNA_m5C:0.999537056742512 42941 chr19 11553320 11553320 1 + G T UCEC 11553302 + 11553282 11553322 41 GAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCAGAAGCT GAGAAGCCAGAGAGAGAGGCCAAAGAGCAGCACCAGAATCT < 41bp 1 0.353872765681707 1 0.42739400267601 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553302 chr19:11553320 nonsynonymous SNV 0.996 1 39 hm5C_associated_SNPs_44016 0 0 1 0 1 Nucleus 1 0.500231644111535 1 0.999536711776929 hm5C_site_42941 DeepMRMD:1;iRNA_m5C:0.999536711776929 42942 chr19 11553320 11553320 1 + G T UCEC 11553314 + 11553294 11553334 41 AGAGAGGCCAAAGAGCAGCACCAGAAGCTGTGGGAAGGTAT AGAGAGGCCAAAGAGCAGCACCAGAATCTGTGGGAAGGTAT < 41bp 1 0.362109008881767 1 0.109503626823425 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553314 chr19:11553320 nonsynonymous SNV 0.996 1 27 hm5C_associated_SNPs_44017 0 0 1 0 1 Nucleus 1 0.500231326627636 1 0.999537346744727 hm5C_site_42942 DeepMRMD:1;iRNA_m5C:0.999537346744727 42943 chr12 58001321 58001321 1 + C T UCEC 58001336 + 58001316 58001356 41 GACGCCACCCTCCTACTGCCCAGCTATGAGAAGTACGGCAC GACGCTACCCTCCTACTGCCCAGCTATGAGAAGTACGGCAC < 41bp 1 0.599995255878307 1 0.13177078962326 experiment 0.800009488243386 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DTX3 ENSG00000178498 CDS Human protein_coding chr12:58001336 chr12:58001321 synonymous SNV . 0 6 hm5C_associated_SNPs_44019 0 0 1 0 0 exosome 1 0.500231658024169 1 0.999536683951663 hm5C_site_42943 DeepMRMD:1;iRNA_m5C:0.999536683951663 42944 chr6 160494422 160494422 1 + G T UCEC 160494408 + 160494388 160494428 41 TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATATGCCCAT < 41bp 1 0.35681981254414 1 0.8258056640625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494408 chr6:160494422 nonsynonymous SNV 0.784 2 35 hm5C_associated_SNPs_44020 0 0 1 0 1 Endoplasmic reticulum 1 0.500237730370257 0.348388671875 0.999524539259486 hm5C_site_42944 DeepMRMD:0.348388671875;iRNA_m5C:0.999524539259486 42945 chr1 183101606 183101606 1 + A G UCEC 183101623 + 183101603 183101643 41 ACAACCTGCTTCTGAGGACACTGGCAGGAGAAAATCAAACA ACAGCCTGCTTCTGAGGACACTGGCAGGAGAAAATCAAACA < 41bp 1 0.301559320458501 1 0.287742435932159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183101623 chr1:183101606 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_44021 0 0 1 0 2 Ribosome 1 0.50023164394516 1 0.999536712109681 hm5C_site_42945 DeepMRMD:1;iRNA_m5C:0.999536712109681 42946 chr12 132335767 132335767 1 + C T UCEC 132335772 + 132335752 132335792 41 TGCTGCTGCTGCTGCCGCCACTGTCACCAGGCGCCCTGTGG TGCTGCTGCTGCTGCTGCCACTGTCACCAGGCGCCCTGTGG < 41bp 1 0.17492324360566 1 0.109468996524811 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132335772 chr12:132335767 nonsynonymous SNV 0.001 0 16 hm5C_associated_SNPs_44022 0 0 1 0 0 Cytosol 1 0.500231645582595 1 0.99953670883481 hm5C_site_42946 DeepMRMD:1;iRNA_m5C:0.99953670883481 42947 chr6 161508794 161508794 1 + G A UCEC 161508811 + 161508791 161508831 41 TTTGCAGTTACTCAATGCAGCTGCAGGAAAGGACTGTTCAA TTTACAGTTACTCAATGCAGCTGCAGGAAAGGACTGTTCAA < 41bp 1 0.613802438796106 1 0.514565229415894 experiment 0.772395122407788 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161508811 chr6:161508794 synonymous SNV . 0 4 hm5C_associated_SNPs_44023 0 0 1 0 1 Cytosol 1 0.500231643914044 0.970869541168212 0.999536712171912 hm5C_site_42947 DeepMRMD:0.970869541168212;iRNA_m5C:0.999536712171912 42948 chr15 99434701 99434701 1 + C T UCEC 99434698 + 99434678 99434718 41 CTATGCCGGTGTCTGTGTGCCTGCCTGCCCGCCCAACACCT CTATGCCGGTGTCTGTGTGCCTGTCTGCCCGCCCAACACCT < 41bp 1 0.117071995837962 1 0.174305438995361 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99434698 chr15:99434701 nonsynonymous SNV 0.721 1 24 hm5C_associated_SNPs_44024 0 0 1 0 0 Endoplasmic reticulum 1 0.500231683164246 1 0.999536633671508 hm5C_site_42948 DeepMRMD:1;iRNA_m5C:0.999536633671508 42949 chr3 158383128 158383128 1 + C T UCEC 158383132 + 158383112 158383152 41 TTCTTCTTTTAAAGAACGATCTGGAAAAATTTTCAAAAGGT TTCTTCTTTTAAAGAATGATCTGGAAAAATTTTCAAAAGGT < 41bp 1 0.67482724611247 1 0.579138576984406 experiment 0.65034550777506 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GFM1 ENSG00000168827 CDS Human protein_coding chr3:158383132 chr3:158383128 synonymous SNV . 0 17 hm5C_associated_SNPs_44025 0 0 0 0 1 Nucleus 1 0.500233413612066 0.841722846031188 0.999533172775869 hm5C_site_42949 DeepMRMD:0.841722846031188;iRNA_m5C:0.999533172775869 42950 chr9 133506095 133506095 1 + C T UCEC 133506078 + 133506058 133506098 41 CGTGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCA CGTGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACTCCA < 41bp 1 0.284327067493059 1 0.0879555344581604 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506078 chr9:133506095 nonsynonymous SNV 0.999 3 38 hm5C_associated_SNPs_44026 0 0 1 0 2 Ribosome 1 0.500231419339422 1 0.999537161321157 hm5C_site_42950 DeepMRMD:1;iRNA_m5C:0.999537161321157 42951 chr9 133506095 133506095 1 + C T UCEC 133506080 + 133506060 133506100 41 TGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCAAC TGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACTCCAAC < 41bp 1 0.0295746637297017 1 0.268026411533356 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506080 chr9:133506095 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_44027 0 0 1 0 2 Ribosome 1 0.50023111378782 1 0.999537772424361 hm5C_site_42951 DeepMRMD:1;iRNA_m5C:0.999537772424361 42952 chr19 10225355 10225355 1 + C A UCEC 10225362 + 10225342 10225382 41 CCAAGCCCTGCCCCTCAATGCCACAGCCGCCCCTAAACCGT CCAAGCCCTGCCCATCAATGCCACAGCCGCCCCTAAACCGT < 41bp 1 0.558686442755544 1 0.200268536806107 experiment 0.882627114488912 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control P2RY11;PPAN-P2RY11 ENSG00000130810;ENSG00000243207;ENSG00000244165 CDS Human other chr19:10225362 chr19:10225355 nonsynonymous SNV 0.001 2 14 hm5C_associated_SNPs_44028 0 0 1 0 0 unknown 1 0.500231640243459 1 0.999536719513081 hm5C_site_42952 DeepMRMD:1;iRNA_m5C:0.999536719513081 42953 chr20 35835747 35835747 1 + C T UCEC 35835730 + 35835710 35835750 41 GCAAGAAGAACTTTGAGTCCCTCTCCGAAGCCTTCAGCGTG GCAAGAAGAACTTTGAGTCCCTCTCCGAAGCCTTCAGTGTG < 41bp 1 0.206769005854187 1 0.0480694770812988 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35835730 chr20:35835747 synonymous SNV . 0 38 hm5C_associated_SNPs_44029 0 0 1 0 1 Ribosome 1 0.500231643795551 1 0.999536712408899 hm5C_site_42953 DeepMRMD:1;iRNA_m5C:0.999536712408899 42954 chr6 139487469 139487469 1 + A G UCEC 139487463 + 139487443 139487483 41 GATCTGCAGCTTCGGTAGGCCGGTGGACCTGGAGAAGGACG GATCTGCAGCTTCGGTAGGCCGGTGGGCCTGGAGAAGGACG < 41bp 1 0.556894411119041 1 0.502622067928314 experiment 0.886211177761918 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECA ENSG00000112406 CDS Human protein_coding chr6:139487463 chr6:139487469 nonsynonymous SNV 0.999 2 27 hm5C_associated_SNPs_44031 0 0 1 0 1 Ribosome 1 0.500231643915358 0.994755864143372 0.999536712169284 hm5C_site_42954 DeepMRMD:0.994755864143372;iRNA_m5C:0.999536712169284 42955 chr3 32483440 32483440 1 + G A UCEC 32483437 + 32483417 32483457 41 TTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCAC TTTGCGACTTGATAATGATCCTCACCTTTTACCTGGTCCAC < 41bp 1 0.263767917004247 1 0.0865810215473175 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32483437 chr3:32483440 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_44032 0 0 1 0 1 Ribosome 1 0.500231705754716 1 0.999536588490567 hm5C_site_42955 DeepMRMD:1;iRNA_m5C:0.999536588490567 42956 chr19 49652958 49652958 1 + G A UCEC 49652948 + 49652928 49652968 41 GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCACAAGCTGCAG < 41bp 1 0.0893870045744738 1 0.116752028465271 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652948 chr19:49652958 nonsynonymous SNV 0.999 3 31 hm5C_associated_SNPs_44033 0 0 0 0 1 Cytosol 1 0.50023164392003 1 0.99953671215994 hm5C_site_42956 DeepMRMD:1;iRNA_m5C:0.99953671215994 42957 chr19 49652958 49652958 1 + G A UCEC 49652950 + 49652930 49652970 41 GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC GCCCTGGGCTCTCCGGGGCTCCCTCTCCACAAGCTGCAGCC < 41bp 1 0.0568481865924743 1 0.0710450112819672 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652950 chr19:49652958 nonsynonymous SNV 0.999 3 29 hm5C_associated_SNPs_44034 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_42957 DeepMRMD:1;iRNA_m5C:0.999536712157815 Heel bone mineral density 42958 chr19 49652958 49652958 1 + G A UCEC 49652951 + 49652931 49652971 41 CCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCA CCCTGGGCTCTCCGGGGCTCCCTCTCCACAAGCTGCAGCCA < 41bp 1 0.0401948066706892 1 0.0591782033443451 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652951 chr19:49652958 nonsynonymous SNV 0.999 3 28 hm5C_associated_SNPs_44035 0 0 0 0 1 Cytosol 1 0.500231643922035 1 0.99953671215593 hm5C_site_42958 DeepMRMD:1;iRNA_m5C:0.99953671215593 42959 chr19 49652958 49652958 1 + G A UCEC 49652952 + 49652932 49652972 41 CCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG CCTGGGCTCTCCGGGGCTCCCTCTCCACAAGCTGCAGCCAG < 41bp 1 0.227903767349475 1 0.7325279712677 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652952 chr19:49652958 nonsynonymous SNV 0.999 3 27 hm5C_associated_SNPs_44036 0 0 0 0 1 Cytosol 1 0.500231643921367 0.5349440574646 0.999536712157266 hm5C_site_42959 DeepMRMD:0.5349440574646;iRNA_m5C:0.999536712157266 42960 chr7 87005035 87005035 1 + G A UCEC 87005024 + 87005004 87005044 41 CAGCATTAACTAGTGAGGAGCGAACTCGATGGGCTAAGGTT CAGCATTAACTAGTGAGGAGCGAACTCGATGAGCTAAGGTT < 41bp 1 0.15230198730842 1 0.371693015098572 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CROT ENSG00000005469 CDS Human protein_coding chr7:87005024 chr7:87005035 stopgain 0.997 1 32 hm5C_associated_SNPs_44037 0 0 1 0 2 Nucleus 1 0.500231643921561 1 0.999536712156878 hm5C_site_42960 DeepMRMD:1;iRNA_m5C:0.999536712156878 42961 chr16 19460917 19460917 1 + C T UCEC 19460903 + 19460883 19460923 41 TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGT TGAAAGTGGTCCTGTCCATGCTTATGGAAACCCATCATTGT < 41bp 1 0.138328370864136 1 0.0841471552848816 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TMC5 ENSG00000103534 CDS Human protein_coding chr16:19460903 chr16:19460917 nonsynonymous SNV 0.007 0 35 hm5C_associated_SNPs_44038 0 0 0 0 2 cytosol 1 0.500231643922703 1 0.999536712154595 hm5C_site_42961 DeepMRMD:1;iRNA_m5C:0.999536712154595 42962 chr5 109155393 109155393 1 + G A UCEC 109155379 + 109155359 109155399 41 ATCTTTTAAAGATCTCTTTTCGAGCACATATACCGCCATTG ATCTTTTAAAGATCTCTTTTCGAGCACATATACCACCATTG < 41bp 1 0.174387635992797 1 0.568516314029694 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109155379 chr5:109155393 synonymous SNV . 0 35 hm5C_associated_SNPs_44039 0 0 1 0 1 Cytosol 1 0.500231643917984 0.862967371940612 0.999536712164033 hm5C_site_42962 DeepMRMD:0.862967371940612;iRNA_m5C:0.999536712164033 42963 chr18 74620325 74620325 1 + G T UCEC 74620335 + 74620315 74620355 41 AGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATGC AGCCTCGATATATGACAGCACTGTAGACCAGCAGAGCATGC < 41bp 1 0.420147728731925 1 0.117629885673523 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74620335 chr18:74620325 nonsynonymous SNV 0.002 1 11 hm5C_associated_SNPs_44040 0 0 1 0 1 Cytosol 1 0.500231643912414 1 0.999536712175171 hm5C_site_42963 DeepMRMD:1;iRNA_m5C:0.999536712175171 42964 chr17 66526547 66526547 1 + G A UCEC 66526558 + 66526538 66526578 41 TCCTCAAACGAAACATCCAGCAGTACAACAGTTTTGTGTCA TCCTCAAACAAAACATCCAGCAGTACAACAGTTTTGTGTCA < 41bp 1 0.444957560363756 1 0.889625430107117 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66526558 chr17:66526547 nonsynonymous SNV 0.997 5 10 hm5C_associated_SNPs_44041 0 0 1 0 0 Ribosome 1 0.500231643290275 0.220749139785766 0.999536713419449 hm5C_site_42964 DeepMRMD:0.220749139785766;iRNA_m5C:0.999536713419449 42965 chr19 10935770 10935770 1 + C A UCEC 10935765 + 10935745 10935785 41 GATGGGGCCCAGGAGAACACCTTCTCCATGGACCCCCAACT GATGGGGCCCAGGAGAACACCTTCTACATGGACCCCCAACT < 41bp 1 0.18129933603092 1 0.199826955795288 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10935765 chr19:10935770 nonsynonymous SNV 1.000 5 26 hm5C_associated_SNPs_44042 0 0 1 0 1 Nucleus 1 0.500231644113336 1 0.999536711773327 hm5C_site_42965 DeepMRMD:1;iRNA_m5C:0.999536711773327 42966 chr16 1793361 1793361 1 + G A UCEC 1793369 + 1793349 1793389 41 ACCTCCCTGAACGTGTTCCCCCTGGCTGACGGCACGGTACG ACCTCCCTGAACATGTTCCCCCTGGCTGACGGCACGGTACG < 41bp 1 0.124173960699879 1 0.13775622844696 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1793369 chr16:1793361 nonsynonymous SNV 0.978 2 13 hm5C_associated_SNPs_44043 0 0 1 0 2 chromatin 1 0.500231643920956 1 0.999536712158089 hm5C_site_42966 DeepMRMD:1;iRNA_m5C:0.999536712158089 42967 chr7 129093125 129093125 1 + G A UCEC 129093106 + 129093086 129093126 41 ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTGC ATTCAGAGGTCGATGTGCTACACTGGTCCAGGTACAACTAC < 41bp 1 0.641858843028806 1 0.104128509759903 experiment 0.716282313942387 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129093106 chr7:129093125 nonsynonymous SNV 1.000 2 40 hm5C_associated_SNPs_44044 0 0 1 0 2 Nucleus 1 0.500231643917697 1 0.999536712164606 hm5C_site_42967 DeepMRMD:1;iRNA_m5C:0.999536712164606 42968 chr2 39008767 39008767 1 + G T UCEC 39008755 + 39008735 39008775 41 GAAACTATGAATGAAGGGGACCATAGAGTGAGGGAGAAGCT GAAACTATGAATGAAGGGGACCATAGAGTGAGTGAGAAGCT < 41bp 1 0.248286092395057 1 0.0869268774986267 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008755 chr2:39008767 nonsynonymous SNV 0.193 0 33 hm5C_associated_SNPs_44045 0 0 1 0 0 Ribosome 1 0.500231645357007 1 0.999536709285985 hm5C_site_42968 DeepMRMD:1;iRNA_m5C:0.999536709285985 42969 chr4 56230300 56230300 1 + C T UCEC 56230318 + 56230298 56230338 41 TACGAAGACTCTTCGAGTGCCTCTACGTCAGTGTCTTCTCC TATGAAGACTCTTCGAGTGCCTCTACGTCAGTGTCTTCTCC < 41bp 1 0.549657263970593 1 0.222426980733871 experiment 0.900685472058813 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56230318 chr4:56230300 stopgain 0.005 1 3 hm5C_associated_SNPs_44046 1 0 0 0 1 Ribosome 1 0.500231643922823 1 0.999536712154355 hm5C_site_42969 DeepMRMD:1;iRNA_m5C:0.999536712154355 Congenital disorder of glycosylation type 1Q Congenital disorder of glycosylation type 1Q 42970 chr6 106555104 106555104 1 + C T UCEC 106555109 + 106555089 106555129 41 AGTGACAATGCTGACCGGCTCGAGGACGTGGAGGATGACAT AGTGACAATGCTGACTGGCTCGAGGACGTGGAGGATGACAT < 41bp 1 0.607780440049628 1 0.885298132896423 experiment 0.784439119900745 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106555109 chr6:106555104 nonsynonymous SNV 0.963 3 16 hm5C_associated_SNPs_44047 0 0 0 0 0 cytosol 1 0.500231643922895 0.229403734207154 0.999536712154209 hm5C_site_42970 DeepMRMD:0.229403734207154;iRNA_m5C:0.999536712154209 42971 chr14 50088668 50088668 1 + T C UCEC 50088661 + 50088641 50088681 41 TTCGGCCATTATAGAGAGGCCAAATTCTCCCAGACCAAACA TTCGGCCATTATAGAGAGGCCAAATTCCCCCAGACCAAACA < 41bp 1 0.233896066063053 1 0.214555650949478 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MGAT2 ENSG00000168282 CDS Human protein_coding chr14:50088661 chr14:50088668 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_44048 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_42971 DeepMRMD:1;iRNA_m5C:0.999536712157815 42972 chr11 119054011 119054011 1 + C T UCEC 119054023 + 119054003 119054043 41 GGGTTCAGCGACACCTTGAGCTCCTACTGCGGGATCTGGAA GGGTTCAGTGACACCTTGAGCTCCTACTGCGGGATCTGGAA < 41bp 1 0.327811594681053 1 0.128463327884674 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119054023 chr11:119054011 stopgain 0.347 0 9 hm5C_associated_SNPs_44049 0 0 0 0 0 exosome 1 0.500231643921484 1 0.999536712157033 hm5C_site_42972 DeepMRMD:1;iRNA_m5C:0.999536712157033 42973 chr1 114450783 114450783 1 + C T UCEC 114450803 + 114450783 114450823 41 CGAAAACACCCACAACATAACATAAAGATTGGTGAGTTGTT TGAAAACACCCACAACATAACATAAAGATTGGTGAGTTGTT < 41bp 1 0.31682066656592 1 0.0789452493190765 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114450803 chr1:114450783 stopgain 0.910 1 1 hm5C_associated_SNPs_44050 0 0 0 0 1 chromatin 1 0.500244563150084 1 0.999510873699832 hm5C_site_42973 DeepMRMD:1;iRNA_m5C:0.999510873699832 42974 chr17 16329475 16329475 1 + C T UCEC 16329457 + 16329437 16329477 41 GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCGA GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACTGA < 41bp 1 0.00773526145593274 1 0.0477001965045929 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329457 chr17:16329475 synonymous SNV . 0 39 hm5C_associated_SNPs_44051 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921088 1 0.999536712157824 hm5C_site_42974 DeepMRMD:1;iRNA_m5C:0.999536712157824 42975 chr4 74308049 74308049 1 + G A UCEC 74308041 + 74308021 74308061 41 ATGAGATAGCAAGAAGGCATCCCTTCCTGTATGCACCTACA ATGAGATAGCAAGAAGGCATCCCTTCCTATATGCACCTACA < 41bp 1 0.0656978140241051 1 0.0741245448589325 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AFP ENSG00000081051 CDS Human protein_coding chr4:74308041 chr4:74308049 synonymous SNV . 0 29 hm5C_associated_SNPs_44052 0 0 1 0 2 Endoplasmic reticulum 1 0.500231015430723 1 0.999537969138555 hm5C_site_42975 DeepMRMD:1;iRNA_m5C:0.999537969138555 42976 chr20 60348211 60348211 1 + C A UCEC 60348215 + 60348195 60348235 41 TGCCCGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTG TGCCCGAGAACTCGCGAGGGCCCTTCCCGCAGCAGCTCGTG < 41bp 1 0.0495827150638 1 0.0636293590068817 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348215 chr20:60348211 synonymous SNV . 0 17 hm5C_associated_SNPs_44053 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42976 DeepMRMD:1;iRNA_m5C:0.999536712157815 42977 chr20 60348211 60348211 1 + C A UCEC 60348217 + 60348197 60348237 41 CCCGAGAACTCGCGCGGGCCCTTCCCGCAGCAGCTCGTGAG CCCGAGAACTCGCGAGGGCCCTTCCCGCAGCAGCTCGTGAG < 41bp 1 0.160483181055122 1 0.0628128945827484 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDH4 ENSG00000179242 CDS Human protein_coding chr20:60348217 chr20:60348211 synonymous SNV . 0 15 hm5C_associated_SNPs_44054 0 0 0 0 0 exosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_42977 DeepMRMD:1;iRNA_m5C:0.999536712157806 42978 chr1 24996769 24996769 1 + A T UCEC 24996751 + 24996731 24996771 41 ACCGTCTACAAACTGGTCACCAGCTGTACCGGTCAAAAAGG ACCGTCTACAAACTGGTCACCAGCTGTACCGGTCAAAATGG < 41bp 1 0.567751949578651 1 0.494387060403824 experiment 0.864496100842698 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24996751 chr1:24996769 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_44055 0 0 1 0 0 Cytosol 1 0.500231643921613 1 0.999536712156773 hm5C_site_42978 DeepMRMD:1;iRNA_m5C:0.999536712156773 42979 chr5 134154671 134154671 1 + G A UCEC 134154670 + 134154650 134154690 41 AAGAACCCAAGGAAGGCGAGCGGAAGATTTACTTGGCAATT AAGAACCCAAGGAAGGCGAGCAGAAGATTTACTTGGCAATT < 41bp 1 0.573111907938028 1 0.760170936584473 experiment 0.853776184123943 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134154670 chr5:134154671 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_44056 0 0 1 0 1 Cytosol 1 0.500231643921092 0.479658126831054 0.999536712157815 hm5C_site_42979 DeepMRMD:0.479658126831054;iRNA_m5C:0.999536712157815 42980 chr1 110735224 110735224 1 + C A UCEC 110735227 + 110735207 110735247 41 CACCTGACCACAAAGGACTACATGGAGATGTACAATGTCAT CACCTGACCACAAAGGAATACATGGAGATGTACAATGTCAT < 41bp 1 0.15514563753126 1 0.0640693008899689 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110735227 chr1:110735224 nonsynonymous SNV 0.999 1 18 hm5C_associated_SNPs_44058 0 0 0 0 1 exosome 1 0.500231644016639 1 0.999536711966723 hm5C_site_42980 DeepMRMD:1;iRNA_m5C:0.999536711966723 42981 chr8 121259921 121259921 1 + A G UCEC 121259930 + 121259910 121259950 41 CATTACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATA CATTACGTGGGGCCCCCCATCTTCCCCGGTGAAAGGCTATA < 41bp 1 0.0945669943213522 1 0.0718520879745483 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259930 chr8:121259921 nonsynonymous SNV 0.705 4 12 hm5C_associated_SNPs_44059 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42981 DeepMRMD:1;iRNA_m5C:0.999536712157815 42982 chr8 121259921 121259921 1 + A G UCEC 121259934 + 121259914 121259954 41 ACGTGGGACCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT ACGTGGGGCCCCCCATCTTCCCCGGTGAAAGGCTATAGAAT < 41bp 1 0.420228345411091 1 0.206842064857483 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259934 chr8:121259921 nonsynonymous SNV 0.705 4 8 hm5C_associated_SNPs_44060 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_42982 DeepMRMD:1;iRNA_m5C:0.999536712157815 42983 chr1 25679460 25679460 1 + C T UCEC 25679441 + 25679421 25679461 41 TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCT TGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGTT < 41bp 1 0.100702089221971 1 0.0288422703742981 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25679441 chr1:25679460 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_44061 0 0 1 0 2 Ribosome 1 0.500231664258954 1 0.999536671482091 hm5C_site_42983 DeepMRMD:1;iRNA_m5C:0.999536671482091 42984 chr11 45926282 45926282 1 + G A UCEC 45926276 + 45926256 45926296 41 TTGTCACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGC TTGTCACCTGTAGATTGCCACCACCCACCGGCTCACCGTGC < 41bp 1 0.0373750275482419 1 0.080421507358551 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926276 chr11:45926282 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_44062 0 0 0 0 1 Endoplasmic reticulum 1 0.500237036364225 1 0.99952592727155 hm5C_site_42984 DeepMRMD:1;iRNA_m5C:0.99952592727155 42985 chr11 45926282 45926282 1 + G A UCEC 45926280 + 45926260 45926300 41 CACCTGTAGATTGCCACCACCCGCCGGCTCACCGTGCACTT CACCTGTAGATTGCCACCACCCACCGGCTCACCGTGCACTT < 41bp 1 0.0651040857454924 1 0.0234695374965668 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926280 chr11:45926282 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_44063 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_42985 DeepMRMD:1;iRNA_m5C:0.999536712157815 42986 chr11 45926282 45926282 1 + G A UCEC 45926291 + 45926271 45926311 41 TGCCACCACCCGCCGGCTCACCGTGCACTTTAACCCGCCCT TGCCACCACCCACCGGCTCACCGTGCACTTTAACCCGCCCT < 41bp 1 0.101882486398518 1 0.497727155685425 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926291 chr11:45926282 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_44064 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_42986 DeepMRMD:1;iRNA_m5C:0.999536712157815 42987 chr17 48757186 48757186 1 + C T UCEC 48757176 + 48757156 48757196 41 CAGGTGACATTTGCTCTGAACTGGATGATACGAATGATGTC CAGGTGACATTTGCTCTGAACTGGATGATATGAATGATGTC < 41bp 1 0.510391189842979 1 0.475229322910309 experiment 0.979217620314042 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48757176 chr17:48757186 stopgain 0.924 1 31 hm5C_associated_SNPs_44066 0 0 0 0 2 Endoplasmic reticulum 1 0.500232521931904 1 0.999534956136192 hm5C_site_42987 DeepMRMD:1;iRNA_m5C:0.999534956136192 42988 chr10 121436039 121436039 1 + C T UCEC 121436044 + 121436024 121436064 41 AAACCAGAAAGTAAGCCAGGCCCAGTTGGACCAGAACTCCC AAACCAGAAAGTAAGTCAGGCCCAGTTGGACCAGAACTCCC < 41bp 1 0.19471395225172 1 0.161921471357346 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAG3 ENSG00000151929 CDS Human protein_coding chr10:121436044 chr10:121436039 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_44067 0 0 1 0 2 Nucleus 1 0.500231643917548 1 0.999536712164905 hm5C_site_42988 DeepMRMD:1;iRNA_m5C:0.999536712164905 42989 chr11 68705772 68705772 1 + T C UCEC 68705792 + 68705772 68705812 41 TTCTGCCAGCTCTGCAGCCGCCGCTACTGCCTCAGCCACCA CTCTGCCAGCTCTGCAGCCGCCGCTACTGCCTCAGCCACCA < 41bp 1 0.218295710593139 1 0.278259962797165 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68705792 chr11:68705772 nonsynonymous SNV 0.900 0 1 hm5C_associated_SNPs_44068 0 0 1 0 1 chromatin 1 0.500233447145 1 0.999533105710001 hm5C_site_42989 DeepMRMD:1;iRNA_m5C:0.999533105710001 42990 chr20 37161462 37161462 1 + C T UCEC 37161476 + 37161456 37161496 41 GACTCCCGATAGTGAGAGACCTGCTCAAGCTCTCTTAAGAG GACTCCTGATAGTGAGAGACCTGCTCAAGCTCTCTTAAGAG < 41bp 1 0.280923229090452 1 0.578992962837219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37161476 chr20:37161462 synonymous SNV . 0 7 hm5C_associated_SNPs_44069 0 0 1 0 1 Nucleus 1 0.50023163418929 0.842014074325562 0.999536731621421 hm5C_site_42990 DeepMRMD:0.842014074325562;iRNA_m5C:0.999536731621421 42991 chr7 142459878 142459878 1 + G A UCEC 142459862 + 142459842 142459882 41 CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGA CTCATCTCTGGCTGGGGCAACACTGCGAGCTCTGGCAGTGA < 41bp 1 0.313090829115751 1 0.185269862413406 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459862 chr7:142459878 nonsynonymous SNV 0.018 0 37 hm5C_associated_SNPs_44070 0 0 0 0 1 Cytosol 1 0.500231645691175 1 0.99953670861765 hm5C_site_42991 DeepMRMD:1;iRNA_m5C:0.99953670861765 42992 chr7 142459878 142459878 1 + G A UCEC 142459867 + 142459847 142459887 41 CTCTGGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGG CTCTGGCTGGGGCAACACTGCGAGCTCTGGCAGTGAGTGGG < 41bp 1 0.397934223770833 1 0.5132936835289 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459867 chr7:142459878 nonsynonymous SNV 0.018 0 32 hm5C_associated_SNPs_44072 0 0 0 0 1 Cytosol 1 0.500231538533107 0.9734126329422 0.999536922933787 hm5C_site_42992 DeepMRMD:0.9734126329422;iRNA_m5C:0.999536922933787 42993 chr7 142459878 142459878 1 + G A UCEC 142459871 + 142459851 142459891 41 GGCTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCC GGCTGGGGCAACACTGCGAGCTCTGGCAGTGAGTGGGACCC < 41bp 1 0.382061665765643 1 0.108607560396194 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459871 chr7:142459878 nonsynonymous SNV 0.018 0 28 hm5C_associated_SNPs_44073 0 0 0 0 1 Cytosol 1 0.500231647772852 1 0.999536704454296 hm5C_site_42993 DeepMRMD:1;iRNA_m5C:0.999536704454296 42994 chr7 142459878 142459878 1 + G A UCEC 142459873 + 142459853 142459893 41 CTGGGGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTT CTGGGGCAACACTGCGAGCTCTGGCAGTGAGTGGGACCCTT < 41bp 1 0.581669874087698 1 0.510769009590149 experiment 0.836660251824604 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459873 chr7:142459878 nonsynonymous SNV 0.018 0 26 hm5C_associated_SNPs_44074 0 0 0 0 1 Cytosol 1 0.500231644100513 0.978461980819702 0.999536711798974 hm5C_site_42994 DeepMRMD:0.978461980819702;iRNA_m5C:0.999536711798974 42995 chr7 142459878 142459878 1 + G A UCEC 142459877 + 142459857 142459897 41 GGCAACACTGCGAGCTCTGGCGGTGAGTGGGACCCTTAGTC GGCAACACTGCGAGCTCTGGCAGTGAGTGGGACCCTTAGTC < 41bp 1 0.425718268501924 1 0.738493084907532 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459877 chr7:142459878 nonsynonymous SNV 0.018 0 22 hm5C_associated_SNPs_44075 0 0 0 0 1 Cytosol 1 0.500231643921064 0.523013830184936 0.999536712157872 hm5C_site_42995 DeepMRMD:0.523013830184936;iRNA_m5C:0.999536712157872 42996 chr3 142408619 142408619 1 + C A UCEC 142408604 + 142408584 142408624 41 CTAATTTGTTTAACACATACCCGTGCCTGCACAAGCCGAAT CTAATTTGTTTAACACATACCCGTGCCTGCACAAGACGAAT < 41bp 1 0.111257007884153 1 0.0737068951129913 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142408604 chr3:142408619 nonsynonymous SNV 0.995 1 36 hm5C_associated_SNPs_44076 0 0 0 0 1 Nucleus 1 0.500231648721587 1 0.999536702556826 hm5C_site_42996 DeepMRMD:1;iRNA_m5C:0.999536702556826 42997 chr4 154216614 154216614 1 + C T UCEC 154216623 + 154216603 154216643 41 AACGAGCTGGCCGACCAGGACTTCCCCTTGCACCCGCGGGA AACGAGCTGGCTGACCAGGACTTCCCCTTGCACCCGCGGGA < 41bp 1 0.101657309195205 1 0.0433966517448425 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154216623 chr4:154216614 synonymous SNV . 0 12 hm5C_associated_SNPs_44077 0 0 0 0 0 Ribosome 1 0.500231643921095 1 0.999536712157811 hm5C_site_42997 DeepMRMD:1;iRNA_m5C:0.999536712157811 42998 chr7 819722 819722 1 + A G UCEC 819711 + 819691 819731 41 TCCTACTATCAGAGCAGTGTCCAGTACCTGTACCGAGAGTT TCCTACTATCAGAGCAGTGTCCAGTACCTGTGCCGAGAGTT < 41bp 1 0.150901976168578 1 0.14024430513382 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:819711 chr7:819722 nonsynonymous SNV 0.336 1 32 hm5C_associated_SNPs_44078 0 0 1 0 1 Ribosome 1 0.500231541952173 1 0.999536916095654 hm5C_site_42998 DeepMRMD:1;iRNA_m5C:0.999536916095654 42999 chr2 162226622 162226622 1 + T C UCEC 162226642 + 162226622 162226662 41 TCAGTGTGGAGGCAGTTGATCCAGTGTTCCAAGCTAAAATG CCAGTGTGGAGGCAGTTGATCCAGTGTTCCAAGCTAAAATG < 41bp 1 0.517858019615982 1 0.239958316087723 experiment 0.964283960768037 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162226642 chr2:162226622 nonsynonymous SNV 0.997 2 1 hm5C_associated_SNPs_44079 0 0 1 0 1 Cytosol 1 0.50023164252165 1 0.9995367149567 hm5C_site_42999 DeepMRMD:1;iRNA_m5C:0.9995367149567 43000 chr6 30860279 30860279 1 + G A UCEC 30860273 + 30860253 30860293 41 TTTCTGCAGTGCCGCTTCCTCTTTGCGGGGCCCTGGTTACT TTTCTGCAGTGCCGCTTCCTCTTTGCAGGGCCCTGGTTACT < 41bp 1 0.282674777932007 1 0.127789080142975 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DDR1 ENSG00000204580 CDS Human protein_coding chr6:30860273 chr6:30860279 synonymous SNV . 0 27 hm5C_associated_SNPs_44080 0 0 1 0 1 Ribosome 1 0.500231643921123 1 0.999536712157754 hm5C_site_43000 DeepMRMD:1;iRNA_m5C:0.999536712157754 43001 chr19 11105617 11105617 1 + G A UCEC 11105627 + 11105607 11105647 41 ATGCCAACACGGAGCGGGAGCAGAAGAAAGAGAACGAGCGG ATGCCAACACAGAGCGGGAGCAGAAGAAAGAGAACGAGCGG < 41bp 1 0.615512602926222 1 0.546581447124481 experiment 0.768974794147555 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11105627 chr19:11105617 synonymous SNV . 0 11 hm5C_associated_SNPs_44081 0 0 1 0 1 Nucleus 1 0.500231643921094 0.906837105751038 0.999536712157812 hm5C_site_43001 DeepMRMD:0.906837105751038;iRNA_m5C:0.999536712157812 43002 chr1 44461737 44461737 1 + G A UCEC 44461735 + 44461715 44461755 41 CCTTCGACCTCGAGGCCAGTCGGCTACCCACCGCTGGGGAC CCTTCGACCTCGAGGCCAGTCGACTACCCACCGCTGGGGAC < 41bp 1 0.661833563909841 1 0.105232000350952 experiment 0.676332872180318 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC24 ENSG00000159214 CDS Human protein_coding chr1:44461735 chr1:44461737 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_44082 0 0 0 0 0 chromatin 1 0.500231644685676 1 0.999536710628648 hm5C_site_43002 DeepMRMD:1;iRNA_m5C:0.999536710628648 43003 chr19 54965777 54965777 1 + G A UCEC 54965774 + 54965754 54965794 41 CACAGCACAGCCAGGCGGGGCCCGCCACGGGCCAGGCCTAT CACAGCACAGCCAGGCGGGGCCCACCACGGGCCAGGCCTAT < 41bp 1 0.0266638208887108 1 0.170090883970261 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54965774 chr19:54965777 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_44083 0 0 0 0 0 chromatin 1 0.500231646582307 1 0.999536706835385 hm5C_site_43003 DeepMRMD:1;iRNA_m5C:0.999536706835385 43004 chr19 54965777 54965777 1 + G A UCEC 54965775 + 54965755 54965795 41 ACAGCACAGCCAGGCGGGGCCCGCCACGGGCCAGGCCTATG ACAGCACAGCCAGGCGGGGCCCACCACGGGCCAGGCCTATG < 41bp 1 0.0690303543366424 1 0.10355818271637 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LENG8 ENSG00000167615 CDS Human protein_coding chr19:54965775 chr19:54965777 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_44084 0 0 0 0 0 chromatin 1 0.500233549597332 1 0.999532900805336 hm5C_site_43004 DeepMRMD:1;iRNA_m5C:0.999532900805336 43005 chr1 109806906 109806906 1 + T C UCEC 109806891 + 109806871 109806911 41 AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCA AGAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGCCTGCA < 41bp 1 0.0480163516822035 1 0.0801582038402557 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806891 chr1:109806906 synonymous SNV . 0 36 hm5C_associated_SNPs_44086 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_43005 DeepMRMD:1;iRNA_m5C:0.999536712157815 43006 chr1 109806906 109806906 1 + T C UCEC 109806892 + 109806872 109806912 41 GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCAC GAGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGCCTGCAC < 41bp 1 0.191195264568588 1 0.392038941383362 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806892 chr1:109806906 synonymous SNV . 0 35 hm5C_associated_SNPs_44087 0 0 1 0 1 Endoplasmic reticulum 1 0.500231825511221 1 0.999536348977558 hm5C_site_43006 DeepMRMD:1;iRNA_m5C:0.999536348977558 43007 chr1 109806906 109806906 1 + T C UCEC 109806893 + 109806873 109806913 41 AGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACC AGCAGAGGGCAACCTGGGCCCCCGGCTGCATGGCCTGCACC < 41bp 1 0.261097880512903 1 0.255912303924561 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806893 chr1:109806906 synonymous SNV . 0 34 hm5C_associated_SNPs_44088 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_43007 DeepMRMD:1;iRNA_m5C:0.999536712157815 43008 chr1 109806906 109806906 1 + T C UCEC 109806894 + 109806874 109806914 41 GCAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCT GCAGAGGGCAACCTGGGCCCCCGGCTGCATGGCCTGCACCT < 41bp 1 0.149675715221607 1 0.416567921638489 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806894 chr1:109806906 synonymous SNV . 0 33 hm5C_associated_SNPs_44089 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643565989 1 0.999536712868021 hm5C_site_43008 DeepMRMD:1;iRNA_m5C:0.999536712868021 43009 chr1 109806906 109806906 1 + T C UCEC 109806895 + 109806875 109806915 41 CAGAGGGCAACCTGGGCCCCCGGCTGCATGGTCTGCACCTG CAGAGGGCAACCTGGGCCCCCGGCTGCATGGCCTGCACCTG < 41bp 1 0.255680015046276 1 0.598412752151489 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806895 chr1:109806906 synonymous SNV . 0 32 hm5C_associated_SNPs_44090 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643918783 0.803174495697022 0.999536712162434 hm5C_site_43009 DeepMRMD:0.803174495697022;iRNA_m5C:0.999536712162434 43010 chr12 113388603 113388603 1 + G A UCEC 113388604 + 113388584 113388624 41 GGACCAGGGGCCCCGCCGCGCAGAGATCCTTGATGAGATGC GGACCAGGGGCCCCGCCGCACAGAGATCCTTGATGAGATGC < 41bp 1 0.574116122784342 1 0.564908504486084 experiment 0.851767754431317 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OAS3 ENSG00000111331 CDS Human protein_coding chr12:113388604 chr12:113388603 nonsynonymous SNV 0.006 0 20 hm5C_associated_SNPs_44091 0 0 0 0 0 Nucleus 1 0.500231644593214 0.870182991027832 0.999536710813572 hm5C_site_43010 DeepMRMD:0.870182991027832;iRNA_m5C:0.999536710813572 43011 chr12 57619042 57619042 1 + C A UCEC 57619032 + 57619012 57619052 41 AGTGTGTATTTCCGCCACAACTCGTCCAGCCTGGGCAACCT AGTGTGTATTTCCGCCACAACTCGTCCAGCATGGGCAACCT < 41bp 1 0.593315394903456 1 0.306727647781372 experiment 0.813369210193089 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619032 chr12:57619042 nonsynonymous SNV 0.999 2 31 hm5C_associated_SNPs_44092 0 0 0 0 0 exosome 1 0.500231643921328 1 0.999536712157344 hm5C_site_43011 DeepMRMD:1;iRNA_m5C:0.999536712157344 43012 chr11 44092843 44092843 1 + G A UCEC 44092826 + 44092806 44092846 41 GGCATCATTAACTTGGGCACCAGTGAGAACAAACTCTGCTT GGCATCATTAACTTGGGCACCAGTGAGAACAAACTCTACTT < 41bp 1 0.36532982176205 1 0.503534078598022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACCS ENSG00000110455 CDS Human protein_coding chr11:44092826 chr11:44092843 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_44093 0 0 1 0 2 chromatin 1 0.500231643921068 0.992931842803956 0.999536712157865 hm5C_site_43012 DeepMRMD:0.992931842803956;iRNA_m5C:0.999536712157865 43013 chr17 41296965 41296965 1 + C T UCEC 41296945 + 41296925 41296965 41 CACACCGCGGCCAGCAGGCACCTGGCACCCACCTTCCCTGC CACACCGCGGCCAGCAGGCACCTGGCACCCACCTTCCCTGT < 41bp 1 0.365612053219581 1 0.134837329387665 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NBR2 ENSG00000198496 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:41296945 chr17:41296965 . . 0 41 hm5C_associated_SNPs_44094 0 0 0 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_43013 DeepMRMD:1;iRNA_m5C:0.999536712157815 43014 chr10 5937103 5937103 1 + G A UCEC 5937118 + 5937098 5937138 41 GAGATGCCAGAGGACGAGTGCCCACTTGCTGGTCTTCACAG GAGATACCAGAGGACGAGTGCCCACTTGCTGGTCTTCACAG < 41bp 1 0.129652827460749 1 0.0684912502765656 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5937118 chr10:5937103 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_44095 0 0 0 0 2 Ribosome 1 0.500231643921039 1 0.999536712157922 hm5C_site_43014 DeepMRMD:1;iRNA_m5C:0.999536712157922 43015 chr21 46713505 46713505 1 + G A UCEC 46713488 + 46713468 46713508 41 TCTGGACTCATTGCGGAGTTCCACCCCTGCACGTTGCGGTT TCTGGACTCATTGCGGAGTTCCACCCCTGCACGTTGCAGTT < 41bp 1 0.0648929145843388 1 0.121328145265579 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LOC642852 ENSG00000223768 ncRNA_intronic Human lincRNA chr21:46713488 chr21:46713505 . . 0 38 hm5C_associated_SNPs_44096 0 0 1 0 0 unknown 1 0.500231643921096 1 0.999536712157808 hm5C_site_43015 DeepMRMD:1;iRNA_m5C:0.999536712157808 43016 chr10 5791141 5791141 1 + C T UCEC 5791136 + 5791116 5791156 41 CTTACGTCCAAATCCGAGATCTCCACGGGATCCTCAGGACT CTTACGTCCAAATCCGAGATCTCCATGGGATCCTCAGGACT < 41bp 1 0.642422611466249 1 0.898550748825073 experiment 0.715154777067501 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM208B ENSG00000108021 CDS Human protein_coding chr10:5791136 chr10:5791141 synonymous SNV . 0 26 hm5C_associated_SNPs_44097 0 0 1 0 0 Nucleus 1 0.500247137734327 0.202898502349854 0.999505724531347 hm5C_site_43016 DeepMRMD:0.202898502349854;iRNA_m5C:0.999505724531347 43017 chr2 192141645 192141645 1 + C A UCEC 192141649 + 192141629 192141669 41 AAATGGAGGTGAAAACCTCACTTCTGGACAATATGATTGGA AAATGGAGGTGAAAACATCACTTCTGGACAATATGATTGGA < 41bp 1 0.24430667977223 1 0.179781019687653 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MYO1B ENSG00000128641 CDS Human protein_coding chr2:192141649 chr2:192141645 synonymous SNV . 0 17 hm5C_associated_SNPs_44099 0 0 1 0 1 Nucleus 1 0.500231643916774 1 0.999536712166452 hm5C_site_43017 DeepMRMD:1;iRNA_m5C:0.999536712166452 43018 chr14 100996337 100996337 1 + G A UCEC 100996330 + 100996310 100996350 41 TATCACCCCGTGCTGCCCTCCGTCCTCGCCACCTGCTCCTG TATCACCCCGTGCTGCCCTCCGTCCTCACCACCTGCTCCTG < 41bp 1 0.188409644035678 1 0.789827942848206 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100996330 chr14:100996337 nonsynonymous SNV 0.757 3 28 hm5C_associated_SNPs_44100 0 0 1 0 0 chromatin 1 0.500231640991261 0.420344114303588 0.999536718017479 hm5C_site_43018 DeepMRMD:0.420344114303588;iRNA_m5C:0.999536718017479 43019 chr15 40756128 40756128 1 + C G UCEC 40756137 + 40756117 40756157 41 ACAATCCGAGTCCGGGACACCGTCCTTCTCAAATCAGGCCC ACAATCCGAGTGCGGGACACCGTCCTTCTCAAATCAGGCCC < 41bp 1 0.265265059576425 1 0.169497698545456 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756137 chr15:40756128 synonymous SNV . 0 12 hm5C_associated_SNPs_44101 0 0 1 0 2 chromatin 1 0.500231643921094 1 0.999536712157812 hm5C_site_43019 DeepMRMD:1;iRNA_m5C:0.999536712157812 43020 chr19 30936299 30936299 1 + C T UCEC 30936308 + 30936288 30936328 41 TTTTTGTCACACGGGCTGAACCAGACTCTCGAGTATAACCT TTTTTGTCACATGGGCTGAACCAGACTCTCGAGTATAACCT < 41bp 1 0.281567589192759 1 0.0647166669368744 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936308 chr19:30936299 synonymous SNV . 0 12 hm5C_associated_SNPs_44102 0 0 1 0 0 exosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_43020 DeepMRMD:1;iRNA_m5C:0.99953671215781 43021 chr3 47032984 47032984 1 + C T UCEC 47032971 + 47032951 47032991 41 TGCGGGGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTA TGCGGGGCTGGAGCCGTGGGCCAGCCCCGGACCTGTGCCTA < 41bp 1 0.134190930822241 1 0.663937211036682 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032971 chr3:47032984 nonsynonymous SNV 0.060 0 34 hm5C_associated_SNPs_44103 0 0 0 0 1 Nucleus 1 0.500231643921039 0.672125577926636 0.999536712157921 hm5C_site_43021 DeepMRMD:0.672125577926636;iRNA_m5C:0.999536712157921 43022 chr3 47032984 47032984 1 + C T UCEC 47032972 + 47032952 47032992 41 GCGGGGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAG GCGGGGCTGGAGCCGTGGGCCAGCCCCGGACCTGTGCCTAG < 41bp 1 0.316001830241374 1 0.813081860542297 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032972 chr3:47032984 nonsynonymous SNV 0.060 0 33 hm5C_associated_SNPs_44104 0 0 0 0 1 Nucleus 1 0.500231643921095 0.373836278915406 0.99953671215781 hm5C_site_43022 DeepMRMD:0.373836278915406;iRNA_m5C:0.99953671215781 43023 chr3 47032984 47032984 1 + C T UCEC 47032975 + 47032955 47032995 41 GGGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGC GGGCTGGAGCCGTGGGCCAGCCCCGGACCTGTGCCTAGTGC < 41bp 1 0.32738542240347 1 0.234577775001526 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032975 chr3:47032984 nonsynonymous SNV 0.060 0 30 hm5C_associated_SNPs_44105 0 0 0 0 1 Nucleus 1 0.500231643918924 1 0.999536712162153 hm5C_site_43023 DeepMRMD:1;iRNA_m5C:0.999536712162153 43024 chr3 47032984 47032984 1 + C T UCEC 47032976 + 47032956 47032996 41 GGCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGCC GGCTGGAGCCGTGGGCCAGCCCCGGACCTGTGCCTAGTGCC < 41bp 1 0.423928875090249 1 0.620219171047211 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032976 chr3:47032984 nonsynonymous SNV 0.060 0 29 hm5C_associated_SNPs_44106 0 0 0 0 1 Nucleus 1 0.500231643913166 0.759561657905578 0.999536712173669 hm5C_site_43024 DeepMRMD:0.759561657905578;iRNA_m5C:0.999536712173669 43025 chr3 47032984 47032984 1 + C T UCEC 47032977 + 47032957 47032997 41 GCTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGCCA GCTGGAGCCGTGGGCCAGCCCCGGACCTGTGCCTAGTGCCA < 41bp 1 0.661415100801021 1 0.492107450962067 experiment 0.677169798397959 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032977 chr3:47032984 nonsynonymous SNV 0.060 0 28 hm5C_associated_SNPs_44107 0 0 0 0 1 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_43025 DeepMRMD:1;iRNA_m5C:0.999536712157812 43026 chr3 47032984 47032984 1 + C T UCEC 47032978 + 47032958 47032998 41 CTGGAGCCGTGGGCCAGCCCCGGACCCGTGCCTAGTGCCAC CTGGAGCCGTGGGCCAGCCCCGGACCTGTGCCTAGTGCCAC < 41bp 1 0.380066950953923 1 0.571761310100555 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47032978 chr3:47032984 nonsynonymous SNV 0.060 0 27 hm5C_associated_SNPs_44108 0 0 0 0 1 Nucleus 1 0.500231643921352 0.85647737979889 0.999536712157297 hm5C_site_43026 DeepMRMD:0.85647737979889;iRNA_m5C:0.999536712157297 43027 chr1 109804152 109804152 1 + G A UCEC 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGCCACAAAGGAGCACGACGGGTTGCTGTTGTACAATGG < 41bp 1 0.299802543190308 1 0.31911426782608 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804152 nonsynonymous SNV 0.735 1 17 hm5C_associated_SNPs_44109 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_43027 DeepMRMD:1;iRNA_m5C:0.999536712157814 43028 chr17 18832164 18832164 1 + C T UCEC 18832171 + 18832151 18832191 41 TTTCTTGCTGCAGCAGAGACCCTGAAGGAAAGAGGTGCATA TTTCTTGCTGCAGTAGAGACCCTGAAGGAAAGAGGTGCATA < 41bp 1 0.334884081333377 1 0.13500252366066 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18832171 chr17:18832164 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_44110 0 0 1 0 1 Ribosome 1 0.500231643880328 1 0.999536712239344 hm5C_site_43028 DeepMRMD:1;iRNA_m5C:0.999536712239344 43029 chr2 192265524 192265524 1 + C T UCEC 192265542 + 192265522 192265562 41 TGCTATTGCAGTTATTTGGGCTTACTGGCTTGGATCTAAGG TGTTATTGCAGTTATTTGGGCTTACTGGCTTGGATCTAAGG < 41bp 1 0.0282014368128633 1 0.114156186580658 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MYO1B ENSG00000128641 CDS Human protein_coding chr2:192265542 chr2:192265524 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_44112 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43029 DeepMRMD:1;iRNA_m5C:0.999536712157815 43030 chr6 90305643 90305643 1 + G A UCEC 90305648 + 90305628 90305668 41 TTCACAGCATGGCCGGACTCCCCTGCATCTTGCTGCCAATA TTCACAGCATGGCCGAACTCCCCTGCATCTTGCTGCCAATA < 41bp 1 0.0944700250705208 1 0.0810502767562866 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90305648 chr6:90305643 synonymous SNV . 0 16 hm5C_associated_SNPs_44113 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43030 DeepMRMD:1;iRNA_m5C:0.999536712157815 43031 chr12 122517014 122517014 1 + G A UCEC 122517033 + 122517013 122517053 41 CGTCGCCGCACCGAGAGCACCCGCCCAAGAAGGGCTACGAT CATCGCCGCACCGAGAGCACCCGCCCAAGAAGGGCTACGAT < 41bp 1 0.0656502560375551 1 0.456039786338806 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MLXIP ENSG00000175727 CDS Human protein_coding chr12:122517033 chr12:122517014 synonymous SNV . 0 2 hm5C_associated_SNPs_44114 0 0 1 0 0 chromatin 1 0.500231643921086 1 0.999536712157827 hm5C_site_43031 DeepMRMD:1;iRNA_m5C:0.999536712157827 43032 chr2 171818208 171818208 1 + A C UCEC 171818210 + 171818190 171818230 41 TTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCC TTATTGCCACCACAAGTACACCAGTCCCTCACTTCTGTGCC < 41bp 1 0.20975812130745 1 0.0616903007030487 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171818210 chr2:171818208 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_44115 0 0 1 0 2 Ribosome 1 0.50023875800826 1 0.99952248398348 hm5C_site_43032 DeepMRMD:1;iRNA_m5C:0.99952248398348 43033 chr12 95879657 95879657 1 + A G UCEC 95879655 + 95879635 95879675 41 GCTTTATTTGTATCTCACAGCAAAAGTTCAAACAGACCCTC GCTTTATTTGTATCTCACAGCAGAAGTTCAAACAGACCCTC < 41bp 1 0.688721574841233 1 0.51702892780304 experiment 0.622556850317534 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control METAP2 ENSG00000111142 CDS Human protein_coding chr12:95879655 chr12:95879657 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_44116 0 0 1 2 1 Ribosome 1 0.500231635247886 0.96594214439392 0.999536729504227 hm5C_site_43033 DeepMRMD:0.96594214439392;iRNA_m5C:0.999536729504227 43034 chr1 24020374 24020374 1 + G A UCEC 24020369 + 24020349 24020389 41 CCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGG CCACTGCACAGTTCGAGGGGCCAAGACAGAAGAAATCTTGG < 41bp 1 0.0921933557782458 1 0.167239189147949 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL11 ENSG00000142676 CDS Human protein_coding chr1:24020369 chr1:24020374 nonsynonymous SNV 0.999 2 26 hm5C_associated_SNPs_44117 0 0 1 0 2 Cytosol 1 0.500231643922988 1 0.999536712154025 hm5C_site_43034 DeepMRMD:1;iRNA_m5C:0.999536712154025 43035 chr17 18832162 18832162 1 + A G UCEC 18832171 + 18832151 18832191 41 TTTCTTGCTGCAGCAGAGACCCTGAAGGAAAGAGGTGCATA TTTCTTGCTGCGGCAGAGACCCTGAAGGAAAGAGGTGCATA < 41bp 1 0.414189159572279 1 0.186741501092911 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18832171 chr17:18832162 synonymous SNV . 0 12 hm5C_associated_SNPs_44119 0 0 1 0 1 Ribosome 1 0.500231522476708 1 0.999536955046583 hm5C_site_43035 DeepMRMD:1;iRNA_m5C:0.999536955046583 43036 chrX 103434375 103434375 1 + C T UCEC 103434382 + 103434362 103434402 41 GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAGGTG GGAAGGAGAGGCTTAGTGGGCTCTTCCTTAACGAAGAGGTG < 41bp 1 0.260786989637397 1 0.084915429353714 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103434382 chrX:103434375 synonymous SNV . 0 14 hm5C_associated_SNPs_44120 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43036 DeepMRMD:1;iRNA_m5C:0.999536712157815 43037 chr2 223782820 223782820 1 + A G UCEC 223782831 + 223782811 223782851 41 TTAAATGAAACAGAGGTGACCAACATCATTACTAGTAAAGA TTAAATGAAGCAGAGGTGACCAACATCATTACTAGTAAAGA < 41bp 1 0.544716357704648 1 0.349731117486954 experiment 0.910567284590704 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223782831 chr2:223782820 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_44121 0 0 1 0 2 Endoplasmic reticulum 1 0.500231652630492 1 0.999536694739015 hm5C_site_43037 DeepMRMD:1;iRNA_m5C:0.999536694739015 43038 chr2 109367756 109367756 1 + T G UCEC 109367752 + 109367732 109367772 41 CACATAATGGTAGTCTTCAGCACCTTACTTGGCTTGGCTTA CACATAATGGTAGTCTTCAGCACCGTACTTGGCTTGGCTTA < 41bp 1 0.504306419191373 1 0.479071497917175 experiment 0.991387161617255 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109367752 chr2:109367756 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_44122 0 0 0 0 1 Nucleus 1 0.500231641058049 1 0.999536717883903 hm5C_site_43038 DeepMRMD:1;iRNA_m5C:0.999536717883903 43039 chr11 67079116 67079116 1 + C A UCEC 67079113 + 67079093 67079133 41 AGCCTCTGCAGCCCTTCCCACAGCTTGCAAGGACCAAGGGA AGCCTCTGCAGCCCTTCCCACAGATTGCAAGGACCAAGGGA < 41bp 1 0.260212393092908 1 0.753471195697784 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSH3 ENSG00000172830 CDS Human protein_coding chr11:67079113 chr11:67079116 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_44123 0 0 0 0 1 nucleus 1 0.500231643921092 0.493057608604432 0.999536712157815 hm5C_site_43039 DeepMRMD:0.493057608604432;iRNA_m5C:0.999536712157815 43040 chr11 67069690 67069690 1 + C T UCEC 67069687 + 67069667 67069707 41 GTCCACCCAGCTTTGAAGAGCAGCTGCGCCTGGCCCTGGAG GTCCACCCAGCTTTGAAGAGCAGTTGCGCCTGGCCCTGGAG < 41bp 1 0.293013507163966 1 0.184866517782211 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANKRD13D ENSG00000172932 CDS Human protein_coding chr11:67069687 chr11:67069690 synonymous SNV . 0 24 hm5C_associated_SNPs_44124 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43040 DeepMRMD:1;iRNA_m5C:0.999536712157815 43041 chr11 114183057 114183057 1 + G A UCEC 114183048 + 114183028 114183068 41 GCAGAAGTTCTCCAGCCTCCCCCTGGGCCGGGAGGCAGTAG GCAGAAGTTCTCCAGCCTCCCCCTGGGCCAGGAGGCAGTAG < 41bp 1 0.296625697007671 1 0.265076220035553 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNMT ENSG00000166741 CDS Human protein_coding chr11:114183048 chr11:114183057 nonsynonymous SNV 0.090 0 30 hm5C_associated_SNPs_44126 0 0 0 0 0 Cytosol 1 0.500231643918941 1 0.999536712162118 hm5C_site_43041 DeepMRMD:1;iRNA_m5C:0.999536712162118 43042 chr1 44684007 44684007 1 + G A UCEC 44684019 + 44683999 44684039 41 TGTACTCGGAGCAGGAGTACCAGCTTTATCTCCACGATGAT TGTACTCGAAGCAGGAGTACCAGCTTTATCTCCACGATGAT < 41bp 1 0.477515328580362 1 0.280862033367157 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684019 chr1:44684007 nonsynonymous SNV 0.998 1 9 hm5C_associated_SNPs_44128 0 0 1 0 1 chromatin 1 0.500231695485259 1 0.999536609029481 hm5C_site_43042 DeepMRMD:1;iRNA_m5C:0.999536609029481 43043 chr11 93494812 93494812 1 + C T UCEC 93494810 + 93494790 93494830 41 TACCTGCAGAGTTTCTCTATCGCATTGATCAACCAAAAGAG TACCTGCAGAGTTTCTCTATCGTATTGATCAACCAAAAGAG < 41bp 1 0.282543701360009 1 0.0798113644123077 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93494810 chr11:93494812 synonymous SNV . 0 23 hm5C_associated_SNPs_44129 0 0 1 0 0 Cytosol 1 0.50023373949207 1 0.999532521015861 hm5C_site_43043 DeepMRMD:1;iRNA_m5C:0.999532521015861 43044 chr17 81042988 81042988 1 + G A UCEC 81042993 + 81042973 81043013 41 CTTCACGGACTCCTCGGGGGCCAATATTTATTTGGAAAAAA CTTCACGGACTCCTCAGGGGCCAATATTTATTTGGAAAAAA < 41bp 1 0.037011652967458 1 0.0403677523136139 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control METRNL ENSG00000176845 CDS Human protein_coding chr17:81042993 chr17:81042988 synonymous SNV . 0 16 hm5C_associated_SNPs_44130 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_43044 DeepMRMD:1;iRNA_m5C:0.999536712157815 43045 chr1 153750707 153750707 1 + G A UCEC 153750688 + 153750668 153750708 41 TGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAGCGT TGGCAGTGGGCAGCGGGCTGCGCCCAGATACCTGGGAGCAT < 41bp 1 0.43904293059492 1 0.173095345497131 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750688 chr1:153750707 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44131 0 0 0 0 1 nucleoplasm 1 0.50023164526588 1 0.99953670946824 hm5C_site_43045 DeepMRMD:1;iRNA_m5C:0.99953670946824 43046 chr1 201828077 201828077 1 + C T UCEC 201828085 + 201828065 201828105 41 CATTTTGACATGCATGGGTTCCTGACCAATGTCATCCTTGC CATTTTGACATGTATGGGTTCCTGACCAATGTCATCCTTGC < 41bp 1 0.135166809667936 1 0.0448461174964905 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201828085 chr1:201828077 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_44132 0 0 1 0 2 Nucleus 1 0.50023164392109 1 0.99953671215782 hm5C_site_43046 DeepMRMD:1;iRNA_m5C:0.99953671215782 43047 chr2 99156101 99156101 1 + C T UCEC 99156084 + 99156064 99156104 41 GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGCAGT GATGGCAGAGAGCGTGCTCTCCCTGCACGTGCCCCGGTAGT < 41bp 1 0.320154356599141 1 0.680331885814667 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INPP4A ENSG00000040933 CDS Human protein_coding chr2:99156084 chr2:99156101 stopgain 1.000 1 38 hm5C_associated_SNPs_44133 0 0 1 0 1 Ribosome 1 0.500231913989872 0.639336228370666 0.999536172020255 hm5C_site_43047 DeepMRMD:0.639336228370666;iRNA_m5C:0.999536172020255 43048 chr17 49239101 49239101 1 + T C UCEC 49239112 + 49239092 49239132 41 CATTATACATGGCAGTGATTCTGTGGAGAGTGCAGAGAAGG CATTATACACGGCAGTGATTCTGTGGAGAGTGCAGAGAAGG < 41bp 1 0.437456297905639 1 0.45100063085556 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NME1 ENSG00000239672 CDS Human protein_coding chr17:49239112 chr17:49239101 synonymous SNV . 0 10 hm5C_associated_SNPs_44136 0 0 1 0 1 Ribosome 1 0.50023164384727 1 0.999536712305461 hm5C_site_43048 DeepMRMD:1;iRNA_m5C:0.999536712305461 43049 chr1 32647152 32647152 1 + A C UCEC 32647149 + 32647129 32647169 41 AGACCGAGACCATCGAAGGCCACAGGAGAAGAAAAAAGCCA AGACCGAGACCATCGAAGGCCACCGGAGAAGAAAAAAGCCA < 41bp 1 0.493652530655883 1 0.4496990442276 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TXLNA ENSG00000084652 CDS Human protein_coding chr1:32647149 chr1:32647152 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_44137 0 0 1 0 1 Nucleus 1 0.500232418586843 1 0.999535162826313 hm5C_site_43049 DeepMRMD:1;iRNA_m5C:0.999535162826313 43050 chr6 27101067 27101067 1 + G A UCEC 27101054 + 27101034 27101074 41 GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCGACAACAA GAGATCCTGGAACTGGCGGGCAACGCGGCCCGCAACAACAA < 41bp 1 0.519958751699383 1 0.55085277557373 experiment 0.960082496601234 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101054 chr6:27101067 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_44138 0 0 1 0 0 Ribosome 1 0.500231643921093 0.89829444885254 0.999536712157814 hm5C_site_43050 DeepMRMD:0.89829444885254;iRNA_m5C:0.999536712157814 43051 chr6 27101067 27101067 1 + G A UCEC 27101062 + 27101042 27101082 41 GGAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCC GGAACTGGCGGGCAACGCGGCCCGCAACAACAAGAAGACCC < 41bp 1 0.274334847992883 1 0.256435930728912 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101062 chr6:27101067 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_44139 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43051 DeepMRMD:1;iRNA_m5C:0.999536712157815 43052 chr6 27101067 27101067 1 + G A UCEC 27101063 + 27101043 27101083 41 GAACTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACCCG GAACTGGCGGGCAACGCGGCCCGCAACAACAAGAAGACCCG < 41bp 1 0.542168421313762 1 0.145419716835022 experiment 0.915663157372476 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101063 chr6:27101067 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_44140 0 0 1 0 0 Ribosome 1 0.5002318464956 1 0.9995363070088 hm5C_site_43052 DeepMRMD:1;iRNA_m5C:0.9995363070088 43053 chrX 150156295 150156295 1 + G C UCEC 150156311 + 150156291 150156331 41 AAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGG AAAGCGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGG < 41bp 1 0.450650123550599 1 0.186369061470032 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156311 chrX:150156295 nonsynonymous SNV 0.961 1 5 hm5C_associated_SNPs_44143 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43053 DeepMRMD:1;iRNA_m5C:0.999536712157815 43054 chrX 150156295 150156295 1 + G C UCEC 150156312 + 150156292 150156332 41 AAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA AAGCGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA < 41bp 1 0.669190708124834 1 0.536859273910522 experiment 0.661618583750332 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156312 chrX:150156295 nonsynonymous SNV 0.961 1 4 hm5C_associated_SNPs_44144 0 0 1 0 1 Ribosome 1 0.500231643922876 0.926281452178956 0.999536712154248 hm5C_site_43054 DeepMRMD:0.926281452178956;iRNA_m5C:0.999536712154248 43055 chrX 150156295 150156295 1 + G C UCEC 150156313 + 150156293 150156333 41 AGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA AGCGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA < 41bp 1 0.675715835805387 1 0.74322247505188 experiment 0.648568328389226 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156313 chrX:150156295 nonsynonymous SNV 0.961 1 3 hm5C_associated_SNPs_44145 0 0 1 0 1 Ribosome 1 0.500231643921092 0.51355504989624 0.999536712157815 hm5C_site_43055 DeepMRMD:0.51355504989624;iRNA_m5C:0.999536712157815 43056 chr14 73550246 73550246 1 + C T UCEC 73550235 + 73550215 73550255 41 TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCGGAAAGCTT TTTTGAGCTGGAAGAGAGTACAAGGTGCTTCTGGAAAGCTT < 41bp 1 0.58986860803369 1 0.538762092590332 experiment 0.820262783932621 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73550235 chr14:73550246 synonymous SNV . 0 32 hm5C_associated_SNPs_44146 0 0 1 0 2 Nucleus 1 0.500231658526288 0.922475814819336 0.999536682947424 hm5C_site_43056 DeepMRMD:0.922475814819336;iRNA_m5C:0.999536682947424 43057 chr2 157407222 157407222 1 + G A UCEC 157407233 + 157407213 157407253 41 GCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTAT GCCAGCCAAATGCTGGTGTCCATATTGTGATGCCTGGTTAT < 41bp 1 0.136239676333214 1 0.0697313249111176 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407233 chr2:157407222 nonsynonymous SNV 0.486 3 10 hm5C_associated_SNPs_44147 0 0 1 1 1 Endoplasmic reticulum 1 0.500231647008733 1 0.999536705982535 hm5C_site_43057 DeepMRMD:1;iRNA_m5C:0.999536705982535 43058 chr11 44129667 44129667 1 + G A UCEC 44129673 + 44129653 44129693 41 AATGAACTGCTCATGGCCATCTCAGACAGTGACTACTACAC AATGAACTGCTCATAGCCATCTCAGACAGTGACTACTACAC < 41bp 1 0.581364892233061 1 0.187041461467743 experiment 0.837270215533877 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129673 chr11:44129667 nonsynonymous SNV 0.194 2 15 hm5C_associated_SNPs_44148 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157812 hm5C_site_43058 DeepMRMD:1;iRNA_m5C:0.999536712157812 43059 chr1 32502590 32502590 1 + G A UCEC 32502598 + 32502578 32502618 41 CCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGCT CCTCTCGTGGACATGGGGTGCCAGTGAGAGGCCGGGGAGCT < 41bp 1 0.494058391323095 1 0.47748139500618 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502598 chr1:32502590 nonsynonymous SNV 0.999 2 13 hm5C_associated_SNPs_44150 0 0 1 0 2 Nucleus 1 0.500231699963399 1 0.999536600073201 hm5C_site_43059 DeepMRMD:1;iRNA_m5C:0.999536600073201 43060 chr3 49568961 49568961 1 + G T UCEC 49568966 + 49568946 49568986 41 CCCATCCAGGATCGTGCCAACCCCCACATCTCCAGCCATTG CCCATCCAGGATCGTTCCAACCCCCACATCTCCAGCCATTG < 41bp 1 0.145972117092759 1 0.0347837805747986 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DAG1 ENSG00000173402 CDS Human protein_coding chr3:49568966 chr3:49568961 synonymous SNV . 0 16 hm5C_associated_SNPs_44152 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43060 DeepMRMD:1;iRNA_m5C:0.999536712157815 43061 chr12 69965990 69965990 1 + T C UCEC 69966003 + 69965983 69966023 41 ACATCCTTCTGTGGGAAGTGCTCGCCTGCCTTCAGTAGGGG ACATCCTCCTGTGGGAAGTGCTCGCCTGCCTTCAGTAGGGG < 41bp 1 0.428447144871681 1 0.223352640867233 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FRS2 ENSG00000166225 CDS Human protein_coding chr12:69966003 chr12:69965990 nonsynonymous SNV 0.995 4 8 hm5C_associated_SNPs_44153 0 0 1 0 2 Nucleus 1 0.500231643918109 1 0.999536712163781 hm5C_site_43061 DeepMRMD:1;iRNA_m5C:0.999536712163781 43062 chr11 14865497 14865497 1 + C T UCEC 14865490 + 14865470 14865510 41 TCCTGCATTAGAATTGATGGCTCTATACGTGGCAGCTGCCA TCCTGCATTAGAATTGATGGCTCTATATGTGGCAGCTGCCA < 41bp 1 0.410920183837871 1 0.863337576389313 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14865490 chr11:14865497 synonymous SNV . 0 28 hm5C_associated_SNPs_44154 0 0 1 0 1 chromatin 1 0.500234605797787 0.273324847221374 0.999530788404426 hm5C_site_43062 DeepMRMD:0.273324847221374;iRNA_m5C:0.999530788404426 43063 chr7 94917899 94917899 1 + G A UCEC 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CCATTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA < 41bp 1 0.563600869209373 1 0.173299938440323 experiment 0.872798261581253 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917899 nonsynonymous SNV 0.136 1 3 hm5C_associated_SNPs_44155 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43063 DeepMRMD:1;iRNA_m5C:0.999536712157815 43064 chr5 154174839 154174839 1 + G T UCEC 154174837 + 154174817 154174857 41 ACCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCAC ACCCTTATTGCTTCCTTCCACCTAGTGCAGGCCCTTACCAC < 41bp 1 0.108052418662394 1 0.0602322816848755 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174837 chr5:154174839 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_44156 0 0 1 0 1 Cytosol 1 0.500231647790601 1 0.999536704418798 hm5C_site_43064 DeepMRMD:1;iRNA_m5C:0.999536704418798 43065 chr5 154174839 154174839 1 + G T UCEC 154174838 + 154174818 154174858 41 CCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCACT CCCTTATTGCTTCCTTCCACCTAGTGCAGGCCCTTACCACT < 41bp 1 0.337744708025983 1 0.668883919715881 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154174838 chr5:154174839 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_44157 0 0 1 0 1 Cytosol 1 0.500231643921092 0.662232160568238 0.999536712157815 hm5C_site_43065 DeepMRMD:0.662232160568238;iRNA_m5C:0.999536712157815 43066 chr1 161751789 161751789 1 + G T UCEC 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GACATTTGGGACATCAACAACCAAATCTGTACATGTAATTA < 41bp 1 0.171904500255024 1 0.104089349508286 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751789 nonsynonymous SNV 0.996 0 34 hm5C_associated_SNPs_44158 0 0 1 0 2 Endoplasmic reticulum 1 0.500233985860197 1 0.999532028279607 hm5C_site_43066 DeepMRMD:1;iRNA_m5C:0.999532028279607 43067 chrX 73046589 73046589 1 + C A UCEC 73046585 - 73046565 73046605 41 TACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCA TACCTAGATGGATAGATGACCCAAGCGAAAAAGGTATCTCA < 41bp 1 0.10650677162071 1 0.245333135128021 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046585 chrX:73046589 . . 0 17 hm5C_associated_SNPs_44159 0 0 1 2 0 unknown 1 0.500231643917299 1 0.999536712165402 hm5C_site_43067 DeepMRMD:1;iRNA_m5C:0.999536712165402 43068 chrX 73046589 73046589 1 + C A UCEC 73046606 - 73046586 73046626 41 GAAGGCCCCTGTCACAAAGCCTACCTAGATGGATAGAGGAC GAAGGCCCCTGTCACAAAGCCTACCTAGATGGATAGATGAC < 41bp 1 0.0923852401384065 1 0.0684517920017242 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046606 chrX:73046589 . . 0 38 hm5C_associated_SNPs_44160 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_43068 DeepMRMD:1;iRNA_m5C:0.999536712157815 43069 chr9 80943003 80943003 1 + T C UCEC 80942983 + 80942963 80943003 41 TCAGTTGTCCAGTGGAGCCCCAAAATAGAAGCAAGATGAAT TCAGTTGTCCAGTGGAGCCCCAAAATAGAAGCAAGATGAAC < 41bp 1 0.462292650838077 1 0.423964202404022 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80942983 chr9:80943003 synonymous SNV . 0 41 hm5C_associated_SNPs_44161 0 0 1 0 1 Ribosome 1 0.500231643921096 1 0.999536712157808 hm5C_site_43069 DeepMRMD:1;iRNA_m5C:0.999536712157808 43070 chr9 134382793 134382793 1 + C T UCEC 134382812 + 134382792 134382832 41 GCTGCCAGCACTCGCGGGGGCCTTGTCGGTCCCCATGGCCT GTTGCCAGCACTCGCGGGGGCCTTGTCGGTCCCCATGGCCT < 41bp 1 0.0537112585174522 1 0.0347888171672821 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control POMT1 ENSG00000130714 CDS Human protein_coding chr9:134382812 chr9:134382793 synonymous SNV . 0 2 hm5C_associated_SNPs_44162 0 0 1 0 1 Endoplasmic reticulum 1 0.500231640530521 1 0.999536718938957 hm5C_site_43070 DeepMRMD:1;iRNA_m5C:0.999536718938957 43071 chr7 6661268 6661268 1 + C T UCEC 6661265 + 6661245 6661285 41 AGGAACAGTTACAGCAGCAGCAGCTGCTACAACAGCAGGAA AGGAACAGTTACAGCAGCAGCAGTTGCTACAACAGCAGGAA < 41bp 1 0.226401025266344 1 0.398823529481888 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6661265 chr7:6661268 synonymous SNV . 0 24 hm5C_associated_SNPs_44163 0 0 0 0 0 exosome 1 0.500231643051231 1 0.999536713897538 hm5C_site_43071 DeepMRMD:1;iRNA_m5C:0.999536713897538 43072 chr21 30701832 30701832 1 + C T UCEC 30701844 + 30701824 30701864 41 ATGCACAACGGATAATTTCACTGTCTCGAAATGATTTTCAG ATGCACAATGGATAATTTCACTGTCTCGAAATGATTTTCAG < 41bp 1 0.184262556606321 1 0.131155163049698 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient BACH1 ENSG00000156273 CDS Human protein_coding chr21:30701844 chr21:30701832 nonsynonymous SNV 0.998 2 9 hm5C_associated_SNPs_44164 0 0 1 0 1 Cytosol 1 0.500231660971847 1 0.999536678056307 hm5C_site_43072 DeepMRMD:1;iRNA_m5C:0.999536678056307 43073 chrX 24545705 24545705 1 + G A UCEC 24545707 + 24545687 24545727 41 TTAGAACTCAATGAGAGCGACAGTTGAACTCTATGAAGACA TTAGAACTCAATGAGAGCAACAGTTGAACTCTATGAAGACA < 41bp 1 0.0706186930007436 1 0.384961664676666 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDK3 ENSG00000067992 CDS Human protein_coding chrX:24545707 chrX:24545705 synonymous SNV . 0 19 hm5C_associated_SNPs_44165 0 0 1 0 2 exosome 1 0.500231643882243 1 0.999536712235515 hm5C_site_43073 DeepMRMD:1;iRNA_m5C:0.999536712235515 43074 chr3 113786895 113786895 1 + T C UCEC 113786877 + 113786857 113786897 41 TGCTCCCTGCACGATCCAGTCAGCCCCTGCCCGGCTGGTTA TGCTCCCTGCACGATCCAGTCAGCCCCTGCCCGGCTGGCTA < 41bp 1 0.527846892370175 1 0.607407033443451 experiment 0.944306215259651 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QTRT2 ENSG00000151576 CDS Human protein_coding chr3:113786877 chr3:113786895 synonymous SNV . 0 39 hm5C_associated_SNPs_44166 0 0 1 0 2 Nucleus 1 0.500231646394301 0.785185933113098 0.999536707211398 hm5C_site_43074 DeepMRMD:0.785185933113098;iRNA_m5C:0.999536707211398 43075 chr20 35176484 35176484 1 + G A UCEC 35176493 + 35176473 35176513 41 AGCGAGGCCCCGGGGCCCATCAACTTCACCATGTTCCTCAC AGCGAGGCCCCAGGGCCCATCAACTTCACCATGTTCCTCAC < 41bp 1 0.479438881161806 1 0.777886748313904 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYL9 ENSG00000101335 CDS Human protein_coding chr20:35176493 chr20:35176484 synonymous SNV . 0 12 hm5C_associated_SNPs_44168 0 0 0 0 1 Cytosol 1 0.500231643919923 0.444226503372192 0.999536712160154 hm5C_site_43075 DeepMRMD:0.444226503372192;iRNA_m5C:0.999536712160154 43076 chr19 11141524 11141524 1 + G A UCEC 11141506 + 11141486 11141526 41 AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCGGC AGCACCCGGGCTGGGGGGCTCGGCCTGAACCTCCAGTCAGC < 41bp 1 0.442138900497515 1 0.695037364959717 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141506 chr19:11141524 synonymous SNV . 0 39 hm5C_associated_SNPs_44169 0 0 1 0 1 Nucleus 1 0.500231643921092 0.609925270080566 0.999536712157815 hm5C_site_43076 DeepMRMD:0.609925270080566;iRNA_m5C:0.999536712157815 43077 chr19 40718779 40718779 1 + C T UCEC 40718786 + 40718766 40718806 41 GGACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTG GGACATGGAGCCGTGGTGGGCCCCCAAAGAAGGAAGAACTG < 41bp 1 0.0629099403730065 1 0.141393512487411 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718786 chr19:40718779 synonymous SNV . 0 14 hm5C_associated_SNPs_44170 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644011039 1 0.999536711977922 hm5C_site_43077 DeepMRMD:1;iRNA_m5C:0.999536711977922 43078 chr19 40718779 40718779 1 + C T UCEC 40718787 + 40718767 40718807 41 GACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGG GACATGGAGCCGTGGTGGGCCCCCAAAGAAGGAAGAACTGG < 41bp 1 0.203706256821908 1 0.382641524076462 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718787 chr19:40718779 synonymous SNV . 0 13 hm5C_associated_SNPs_44171 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643928534 1 0.999536712142932 hm5C_site_43078 DeepMRMD:1;iRNA_m5C:0.999536712142932 43079 chr19 40718779 40718779 1 + C T UCEC 40718788 + 40718768 40718808 41 ACATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGT ACATGGAGCCGTGGTGGGCCCCCAAAGAAGGAAGAACTGGT < 41bp 1 0.188178941958765 1 0.558956146240234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718788 chr19:40718779 synonymous SNV . 0 12 hm5C_associated_SNPs_44172 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.882087707519532 0.999536712157815 hm5C_site_43079 DeepMRMD:0.882087707519532;iRNA_m5C:0.999536712157815 43080 chr19 40718779 40718779 1 + C T UCEC 40718789 + 40718769 40718809 41 CATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTC CATGGAGCCGTGGTGGGCCCCCAAAGAAGGAAGAACTGGTC < 41bp 1 0.198471904576981 1 0.698400437831879 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718789 chr19:40718779 synonymous SNV . 0 11 hm5C_associated_SNPs_44173 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921368 0.603199124336242 0.999536712157264 hm5C_site_43080 DeepMRMD:0.603199124336242;iRNA_m5C:0.999536712157264 43081 chr19 40718779 40718779 1 + C T UCEC 40718790 + 40718770 40718810 41 ATGGAGCCGCGGTGGGCCCCCAAAGAAGGAAGAACTGGTCG ATGGAGCCGTGGTGGGCCCCCAAAGAAGGAAGAACTGGTCG < 41bp 1 0.341266576050732 1 0.774573743343353 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718790 chr19:40718779 synonymous SNV . 0 10 hm5C_associated_SNPs_44174 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.450852513313294 0.999536712157815 hm5C_site_43081 DeepMRMD:0.450852513313294;iRNA_m5C:0.999536712157815 43082 chr6 133137664 133137664 1 + G A UCEC 133137684 + 133137664 133137704 41 GAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGT AAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGT < 41bp 1 0.470268680126166 1 0.396497160196304 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137684 chr6:133137664 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_44176 0 0 1 1 2 Cytosol 1 0.500231643786203 1 0.999536712427594 hm5C_site_43082 DeepMRMD:1;iRNA_m5C:0.999536712427594 43083 chrX 153035855 153035855 1 + T A UCEC 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CACCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG < 41bp 1 0.0285061897466913 1 0.0774831175804138 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035855 nonsynonymous SNV 0.997 1 2 hm5C_associated_SNPs_44177 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_43083 DeepMRMD:1;iRNA_m5C:0.999536712157815 43084 chr19 46509884 46509884 1 + T C UCEC 46509891 + 46509871 46509911 41 CGGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCC CGGAACCGCAAGACGGGGGGCCGCCCAGGCTCCTTGGCCCC < 41bp 1 0.107275902153077 1 0.111608356237411 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509891 chr19:46509884 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_44178 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43084 DeepMRMD:1;iRNA_m5C:0.999536712157815 43085 chr19 46509884 46509884 1 + T C UCEC 46509892 + 46509872 46509912 41 GGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCCC GGAACCGCAAGACGGGGGGCCGCCCAGGCTCCTTGGCCCCC < 41bp 1 0.271064158183612 1 0.0901864767074585 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509892 chr19:46509884 nonsynonymous SNV 0.998 1 13 hm5C_associated_SNPs_44179 0 0 1 0 1 chromatin 1 0.50023164487777 1 0.99953671024446 hm5C_site_43085 DeepMRMD:1;iRNA_m5C:0.99953671024446 43086 chr16 675478 675478 1 + G T UCEC 675485 + 675465 675505 41 TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCGA TGGTCCTTTGACGTCATCGACCGCTGGATCAAGGAGATCGA < 41bp 1 0.164783960950659 1 0.080287367105484 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675485 chr16:675478 nonsynonymous SNV 0.992 4 14 hm5C_associated_SNPs_44180 0 0 1 0 2 Ribosome 1 0.500231643917128 1 0.999536712165744 hm5C_site_43086 DeepMRMD:1;iRNA_m5C:0.999536712165744 43087 chr3 126741023 126741023 1 + G T UCEC 126741032 + 126741012 126741052 41 CTGGAGGCACAGCGCAGCTTCTCCATGCGCGACCGCGGGAA CTGGAGGCACATCGCAGCTTCTCCATGCGCGACCGCGGGAA < 41bp 1 0.594309488966165 1 0.967249751091003 experiment 0.811381022067671 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126741032 chr3:126741023 nonsynonymous SNV 0.920 4 12 hm5C_associated_SNPs_44181 0 0 1 0 1 Ribosome 1 0.500233022893292 0.0655004978179941 0.999533954213415 hm5C_site_43087 DeepMRMD:0.0655004978179941;iRNA_m5C:0.999533954213415 43088 chrX 105891600 105891600 1 + G A UCEC 105891593 + 105891573 105891613 41 ACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCA ACAAACAAAGGGAATTAAACCGGGCATACCAAGCATCTTCA < 41bp 1 0.689037681505715 1 0.717086255550385 experiment 0.62192463698857 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891593 chrX:105891600 nonsynonymous SNV 0.000 0 28 hm5C_associated_SNPs_44182 0 0 1 0 1 nucleus 1 0.500231643949294 0.56582748889923 0.999536712101412 hm5C_site_43088 DeepMRMD:0.56582748889923;iRNA_m5C:0.999536712101412 43089 chr3 40553909 40553909 1 + G A UCEC 40553898 + 40553878 40553918 41 TTTCTCCCTGGGCAGCATTCCCATTCACCACGCCTGTTCTG TTTCTCCCTGGGCAGCATTCCCATTCACCACACCTGTTCTG < 41bp 1 0.108070035153864 1 0.168994814157486 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553898 chr3:40553909 synonymous SNV . 0 32 hm5C_associated_SNPs_44184 0 0 0 0 2 cytosol 1 0.500231642636845 1 0.99953671472631 hm5C_site_43089 DeepMRMD:1;iRNA_m5C:0.99953671472631 43090 chr12 57619018 57619018 1 + T C UCEC 57619032 + 57619012 57619052 41 AGTGTGTATTTCCGCCACAACTCGTCCAGCCTGGGCAACCT AGTGTGCATTTCCGCCACAACTCGTCCAGCCTGGGCAACCT < 41bp 1 0.609679157043306 1 0.24118384718895 experiment 0.780641685913389 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619032 chr12:57619018 nonsynonymous SNV 0.999 1 7 hm5C_associated_SNPs_44185 0 0 1 0 0 exosome 1 0.500231643921211 1 0.999536712157579 hm5C_site_43090 DeepMRMD:1;iRNA_m5C:0.999536712157579 43091 chr2 189458726 189458726 1 + C T UCEC 189458714 + 189458694 189458734 41 GAAGGCACAGTATTTTGTCTCGACCCGTTAGACAGTAGGTG GAAGGCACAGTATTTTGTCTCGACCCGTTAGATAGTAGGTG < 41bp 1 0.309531369723455 1 0.0986729264259338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GULP1 ENSG00000144366 CDS Human protein_coding chr2:189458714 chr2:189458726 synonymous SNV . 0 33 hm5C_associated_SNPs_44186 0 0 1 0 1 Ribosome 1 0.500231643926209 1 0.999536712147582 hm5C_site_43091 DeepMRMD:1;iRNA_m5C:0.999536712147582 43092 chr6 36569550 36569550 1 + G A UCEC 36569553 + 36569533 36569573 41 AAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGGT AAATCACAAGCCGTCCCAATCCTTCTCTAGGTCTCGTAGGT < 41bp 1 0.0358536386477031 1 0.0797218680381775 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SRSF3 ENSG00000112081 CDS Human protein_coding chr6:36569553 chr6:36569550 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_44188 0 0 1 0 2 Ribosome 1 0.500231605194279 1 0.999536789611441 hm5C_site_43092 DeepMRMD:1;iRNA_m5C:0.999536789611441 43093 chr22 40391439 40391439 1 + C T UCEC 40391436 + 40391416 40391456 41 ACGGACACTGGTTTCTACCGCGGCGTGAGCCGGGTCACGCT ACGGACACTGGTTTCTACCGCGGTGTGAGCCGGGTCACGCT < 41bp 1 0.547562265770113 1 0.909042477607727 experiment 0.904875468459774 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control FAM83F ENSG00000133477 CDS Human protein_coding chr22:40391436 chr22:40391439 synonymous SNV . 0 24 hm5C_associated_SNPs_44190 0 0 0 0 1 Ribosome 1 0.500231643527417 0.181915044784546 0.999536712945166 hm5C_site_43093 DeepMRMD:0.181915044784546;iRNA_m5C:0.999536712945166 43094 chr19 42880589 42880589 1 + C T UCEC 42880609 + 42880589 42880629 41 CCCCTGCTGCTGACAGGGGCCGGTGGGCCCTGGGGACCCAT TCCCTGCTGCTGACAGGGGCCGGTGGGCCCTGGGGACCCAT < 41bp 1 0.243812093478886 1 0.786110639572144 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42880609 chr19:42880589 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_44191 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644017569 0.427778720855712 0.999536711964863 hm5C_site_43094 DeepMRMD:0.427778720855712;iRNA_m5C:0.999536711964863 43095 chr2 102486868 102486868 1 + C T UCEC 102486859 + 102486839 102486879 41 ATGACCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGGT ATGACCCCATCCAAGGAGGGCACTCTAATTGTCCGCCAGGT < 41bp 1 0.0843531278343048 1 0.0860275626182556 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486859 chr2:102486868 synonymous SNV . 0 30 hm5C_associated_SNPs_44192 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43095 DeepMRMD:1;iRNA_m5C:0.999536712157815 43096 chr17 21731034 21731034 1 + C T UCEC 21731040 + 21731020 21731060 41 GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT GATAAAGAAGGCATTCCCCCCGACCAGCAGAGGCTCATCTT < 41bp 1 0.278191986847329 1 0.362528622150421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731040 chr17:21731034 synonymous SNV . 0 15 hm5C_associated_SNPs_44193 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_43096 DeepMRMD:1;iRNA_m5C:0.999536712157815 43097 chr9 95599738 95599738 1 + G A UCEC 95599736 + 95599716 95599756 41 CGCTGTGGTCTCCGCTGGGGCCGCTGGAGGCCCCGGGGCCT CGCTGTGGTCTCCGCTGGGGCCACTGGAGGCCCCGGGGCCT < 41bp 1 0.309186503193046 1 0.143581956624985 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599736 chr9:95599738 . . 0 23 hm5C_associated_SNPs_44194 0 0 0 0 0 unknown 1 0.500231643921074 1 0.999536712157853 hm5C_site_43097 DeepMRMD:1;iRNA_m5C:0.999536712157853 43098 chr9 95599738 95599738 1 + G A UCEC 95599746 + 95599726 95599766 41 TCCGCTGGGGCCGCTGGAGGCCCCGGGGCCTGAGTTTCCGG TCCGCTGGGGCCACTGGAGGCCCCGGGGCCTGAGTTTCCGG < 41bp 1 0.528948820739628 1 0.61957573890686 experiment 0.942102358520744 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599746 chr9:95599738 . . 0 13 hm5C_associated_SNPs_44196 0 0 0 0 0 unknown 1 0.500231643921182 0.76084852218628 0.999536712157636 hm5C_site_43098 DeepMRMD:0.76084852218628;iRNA_m5C:0.999536712157636 43099 chr9 95599738 95599738 1 + G A UCEC 95599747 + 95599727 95599767 41 CCGCTGGGGCCGCTGGAGGCCCCGGGGCCTGAGTTTCCGGC CCGCTGGGGCCACTGGAGGCCCCGGGGCCTGAGTTTCCGGC < 41bp 1 0.661010309965933 1 0.769736766815186 experiment 0.677979380068134 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD19P ENSG00000187984;ENSG00000226721 ncRNA_exonic Human other chr9:95599747 chr9:95599738 . . 0 12 hm5C_associated_SNPs_44197 0 0 0 0 0 unknown 1 0.500231643921092 0.460526466369628 0.999536712157815 hm5C_site_43099 DeepMRMD:0.460526466369628;iRNA_m5C:0.999536712157815 43100 chr9 18504863 18504863 1 + G A UCEC 18504862 + 18504842 18504882 41 CGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGGGG CGCTCCGAGGAGGACCGGGACAGCCTATGGGATGCCTGGGG < 41bp 1 0.290809470897689 1 0.283362209796906 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18504862 chr9:18504863 nonsynonymous SNV 0.971 0 22 hm5C_associated_SNPs_44198 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43100 DeepMRMD:1;iRNA_m5C:0.999536712157815 43101 chr2 74326586 74326586 1 + C T UCEC 74326589 + 74326569 74326609 41 TCCCCCGCGAGGTCCGACGCCTGCCCGAGCCTGCCAAGTCC TCCCCCGCGAGGTCCGATGCCTGCCCGAGCCTGCCAAGTCC < 41bp 1 0.38852220098376 1 0.0396896302700043 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74326589 chr2:74326586 nonsynonymous SNV 0.997 3 18 hm5C_associated_SNPs_44199 0 0 1 0 0 Cytosol 1 0.500231866481748 1 0.999536267036505 hm5C_site_43101 DeepMRMD:1;iRNA_m5C:0.999536267036505 43102 chr3 127323800 127323800 1 + G A UCEC 127323809 + 127323789 127323829 41 GAGCGGGCCACGGAGGACGGCGAGGAGGACGAGGAGATGAT GAGCGGGCCACAGAGGACGGCGAGGAGGACGAGGAGATGAT < 41bp 1 0.60136126500799 1 0.497272074222565 experiment 0.79727746998402 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MCM2 ENSG00000073111 CDS Human protein_coding chr3:127323809 chr3:127323800 synonymous SNV . 0 12 hm5C_associated_SNPs_44200 0 0 1 0 2 Cytosol 1 0.500228745958248 1 0.999542508083504 hm5C_site_43102 DeepMRMD:1;iRNA_m5C:0.999542508083504 43103 chr17 38249479 38249479 1 + G A UCEC 38249489 + 38249469 38249509 41 CGAAGAGCCCGCAGCAGCGTCTCCTGGAGCTGCTCCACCGA CGAAGAGCCCACAGCAGCGTCTCCTGGAGCTGCTCCACCGA < 41bp 1 0.537613097682758 1 0.552766382694244 experiment 0.924773804634484 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NR1D1;THRA ENSG00000126351;ENSG00000126368 CDS Human other chr17:38249489 chr17:38249479 nonsynonymous SNV 1.000 5 11 hm5C_associated_SNPs_44201 0 0 0 0 1 unknown 1 0.500231643871921 0.894467234611512 0.999536712256158 hm5C_site_43103 DeepMRMD:0.894467234611512;iRNA_m5C:0.999536712256158 43104 chr2 114670799 114670799 1 + C A UCEC 114670803 + 114670783 114670823 41 CCACAGTTTATCATCCCTTCCTGTAAGTATTTCTTTTAAGC CCACAGTTTATCATCCATTCCTGTAAGTATTTCTTTTAAGC < 41bp 1 0.453511775391614 1 0.191579759120941 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ACTR3 ENSG00000115091 CDS Human protein_coding chr2:114670803 chr2:114670799 nonsynonymous SNV 0.997 5 17 hm5C_associated_SNPs_44202 0 0 1 0 2 Ribosome 1 0.500231643920847 1 0.999536712158306 hm5C_site_43104 DeepMRMD:1;iRNA_m5C:0.999536712158306 43105 chr20 39744056 39744056 1 + G A UCEC 39744076 + 39744056 39744096 41 GATGATCTTTTTGATAGACTCAATGTGAGTAGATGAAGCAC AATGATCTTTTTGATAGACTCAATGTGAGTAGATGAAGCAC < 41bp 1 0.455554619912885 1 0.351229667663574 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TOP1 ENSG00000198900 CDS Human protein_coding chr20:39744076 chr20:39744056 nonsynonymous SNV 0.999 4 1 hm5C_associated_SNPs_44203 0 0 1 0 2 Nucleus 1 0.500231603692225 1 0.99953679261555 hm5C_site_43105 DeepMRMD:1;iRNA_m5C:0.99953679261555 43106 chr1 112999446 112999446 1 + C T UCEC 112999436 + 112999416 112999456 41 TAAGCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACC TAAGCGTTTATTGGGGTCATCAGCTAGCAGTCCTGGCTACC < 41bp 1 0.432009774024032 1 0.570381224155426 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999436 chr1:112999446 synonymous SNV . 0 31 hm5C_associated_SNPs_44204 0 0 0 0 0 Ribosome 1 0.500231643921092 0.859237551689148 0.999536712157815 hm5C_site_43106 DeepMRMD:0.859237551689148;iRNA_m5C:0.999536712157815 43107 chr1 112999446 112999446 1 + C T UCEC 112999439 + 112999419 112999459 41 GCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGT GCGTTTATTGGGGTCATCAGCTAGCAGTCCTGGCTACCAGT < 41bp 1 0.533504160373594 1 0.301977604627609 experiment 0.932991679252812 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999439 chr1:112999446 synonymous SNV . 0 28 hm5C_associated_SNPs_44205 0 0 0 0 0 Ribosome 1 0.500231551283593 1 0.999536897432814 hm5C_site_43107 DeepMRMD:1;iRNA_m5C:0.999536897432814 43108 chr1 112999446 112999446 1 + C T UCEC 112999447 + 112999427 112999467 41 TGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTAC TGGGGTCATCAGCTAGCAGTCCTGGCTACCAGTCATCGTAC < 41bp 1 0.417539057269386 1 0.304221868515015 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999447 chr1:112999446 synonymous SNV . 0 20 hm5C_associated_SNPs_44206 0 0 0 0 0 Ribosome 1 0.500232311176274 1 0.999535377647452 hm5C_site_43108 DeepMRMD:1;iRNA_m5C:0.999535377647452 43109 chr1 112999446 112999446 1 + C T UCEC 112999452 + 112999432 112999472 41 TCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGT TCATCAGCTAGCAGTCCTGGCTACCAGTCATCGTACCAAGT < 41bp 1 0.142626902308334 1 0.0332371890544891 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999452 chr1:112999446 synonymous SNV . 0 15 hm5C_associated_SNPs_44207 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43109 DeepMRMD:1;iRNA_m5C:0.999536712157815 43110 chr1 112999446 112999446 1 + C T UCEC 112999455 + 112999435 112999475 41 TCAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGG TCAGCTAGCAGTCCTGGCTACCAGTCATCGTACCAAGTAGG < 41bp 1 0.122898183440117 1 0.0725730955600739 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999455 chr1:112999446 synonymous SNV . 0 12 hm5C_associated_SNPs_44208 0 0 0 0 0 Ribosome 1 0.50023164392117 1 0.99953671215766 hm5C_site_43110 DeepMRMD:1;iRNA_m5C:0.99953671215766 43111 chr1 112999446 112999446 1 + C T UCEC 112999456 + 112999436 112999476 41 CAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGG CAGCTAGCAGTCCTGGCTACCAGTCATCGTACCAAGTAGGG < 41bp 1 0.159331152892556 1 0.472323685884476 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999456 chr1:112999446 synonymous SNV . 0 11 hm5C_associated_SNPs_44209 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43111 DeepMRMD:1;iRNA_m5C:0.999536712157815 43112 chr1 112999446 112999446 1 + C T UCEC 112999460 + 112999440 112999480 41 TAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGGATCA TAGCAGTCCTGGCTACCAGTCATCGTACCAAGTAGGGATCA < 41bp 1 0.38669324864662 1 0.0628741979598999 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999460 chr1:112999446 synonymous SNV . 0 7 hm5C_associated_SNPs_44210 0 0 0 0 0 Ribosome 1 0.500231643921081 1 0.999536712157838 hm5C_site_43112 DeepMRMD:1;iRNA_m5C:0.999536712157838 43113 chr1 183519959 183519959 1 + C T UCEC 183519963 + 183519943 183519983 41 GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC GCTCTCCTCCAACACATAACCATAATTCTGTTCCATTCTCC < 41bp 1 0.426368274218401 1 0.200506836175919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519963 chr1:183519959 synonymous SNV . 0 17 hm5C_associated_SNPs_44211 0 0 1 0 2 Cytosol 1 0.500231643909601 1 0.999536712180798 hm5C_site_43113 DeepMRMD:1;iRNA_m5C:0.999536712180798 43114 chr17 25904587 25904587 1 + C T UCEC 25904584 + 25904564 25904604 41 AGGCCAAGGTGAAGGAGACGCTGCGGCGCTGTGGGGCCAGC AGGCCAAGGTGAAGGAGACGCTGTGGCGCTGTGGGGCCAGC < 41bp 1 0.583780391112606 1 0.119805932044983 experiment 0.832439217774789 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KSR1 ENSG00000141068 CDS Human protein_coding chr17:25904584 chr17:25904587 nonsynonymous SNV 0.920 3 24 hm5C_associated_SNPs_44212 0 0 1 0 1 chromatin 1 0.500231632994111 1 0.999536734011779 hm5C_site_43114 DeepMRMD:1;iRNA_m5C:0.999536734011779 43115 chr19 50104993 50104993 1 + G A UCEC 50104991 + 50104971 50105011 41 GGCTGCTCCTCCTGAGGAGCCCGCCGCCCCGTCTCCCGAAG GGCTGCTCCTCCTGAGGAGCCCACCGCCCCGTCTCCCGAAG < 41bp 1 0.125653673474512 1 0.420712292194366 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PRR12 ENSG00000126464 CDS Human protein_coding chr19:50104991 chr19:50104993 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_44213 0 0 0 0 0 Exosome 1 0.500231643963123 1 0.999536712073755 hm5C_site_43115 DeepMRMD:1;iRNA_m5C:0.999536712073755 43116 chr9 88622365 88622365 1 + G A UCEC 88622373 + 88622353 88622393 41 TGTCAGTCCTCCGGTGCTTTCCCCCAAGTAAGTATTGTAAG TGTCAGTCCTCCAGTGCTTTCCCCCAAGTAAGTATTGTAAG < 41bp 1 0.173196751997546 1 0.15947750210762 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA35 ENSG00000135040 CDS Human protein_coding chr9:88622373 chr9:88622365 synonymous SNV . 0 13 hm5C_associated_SNPs_44214 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43116 DeepMRMD:1;iRNA_m5C:0.999536712157815 43117 chr9 88622365 88622365 1 + G A UCEC 88622374 + 88622354 88622394 41 GTCAGTCCTCCGGTGCTTTCCCCCAAGTAAGTATTGTAAGA GTCAGTCCTCCAGTGCTTTCCCCCAAGTAAGTATTGTAAGA < 41bp 1 0.50308992282669 1 0.623987793922424 experiment 0.99382015434662 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAA35 ENSG00000135040 CDS Human protein_coding chr9:88622374 chr9:88622365 synonymous SNV . 0 12 hm5C_associated_SNPs_44215 0 0 1 0 2 Cytosol 1 0.500231643939575 0.752024412155152 0.999536712120851 hm5C_site_43117 DeepMRMD:0.752024412155152;iRNA_m5C:0.999536712120851 43118 chr17 48631743 48631743 1 + C T UCEC 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGTGTCG < 41bp 1 0.036316977847622 1 0.0146062076091766 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631743 nonsynonymous SNV 0.973 1 37 hm5C_associated_SNPs_44216 0 0 1 0 1 nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_43118 DeepMRMD:1;iRNA_m5C:0.999536712157815 43119 chr13 61034626 61034626 1 + G A UCEC 61034613 + 61034593 61034633 41 CACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATA CACCAAGGATGCTGCGATTACAGATGACTGATGATCATATA < 41bp 1 0.665632408707629 1 0.581136226654053 experiment 0.668735182584743 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034613 chr13:61034626 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_44217 0 0 1 0 1 Cytosol 1 0.500231644781145 0.837727546691894 0.999536710437709 hm5C_site_43119 DeepMRMD:0.837727546691894;iRNA_m5C:0.999536710437709 43120 chr19 50338285 50338285 1 + C T UCEC 50338268 + 50338248 50338288 41 CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCG CTGCGTGCACTTCCCCCACACGGCGCCCTGTGAGGTGTGCG < 41bp 1 0.548563048448492 1 0.769653797149658 experiment 0.902873903103016 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338268 chr19:50338285 nonsynonymous SNV 0.898 5 38 hm5C_associated_SNPs_44219 0 0 0 0 1 chromatin 1 0.500231643921142 0.460692405700684 0.999536712157717 hm5C_site_43120 DeepMRMD:0.460692405700684;iRNA_m5C:0.999536712157717 43121 chr10 118306858 118306858 1 + G A UCEC 118306849 + 118306829 118306869 41 CTCGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTAC CTCGGCTGCTTCAGTGATGACTCCCCATGATCAGGAATTAC < 41bp 1 0.309971685072309 1 0.0317147374153137 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306849 chr10:118306858 stopgain 0.865 1 30 hm5C_associated_SNPs_44220 0 0 0 0 1 unknown 1 0.500231711759877 1 0.999536576480246 hm5C_site_43121 DeepMRMD:1;iRNA_m5C:0.999536576480246 43122 chr10 118306858 118306858 1 + G A UCEC 118306851 + 118306831 118306871 41 CGGCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGG CGGCTGCTTCAGTGATGACTCCCCATGATCAGGAATTACGG < 41bp 1 0.675715747029173 1 0.164736181497574 experiment 0.648568505941654 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306851 chr10:118306858 stopgain 0.865 1 28 hm5C_associated_SNPs_44221 0 0 0 0 1 unknown 1 0.500231644353316 1 0.999536711293368 hm5C_site_43122 DeepMRMD:1;iRNA_m5C:0.999536711293368 43123 chr10 118306858 118306858 1 + G A UCEC 118306853 + 118306833 118306873 41 GCTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAA GCTGCTTCAGTGATGACTCCCCATGATCAGGAATTACGGAA < 41bp 1 0.215357224391456 1 0.140176296234131 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306853 chr10:118306858 stopgain 0.865 1 26 hm5C_associated_SNPs_44222 0 0 0 0 1 unknown 1 0.500231643921089 1 0.999536712157823 hm5C_site_43123 DeepMRMD:1;iRNA_m5C:0.999536712157823 43124 chr10 118306858 118306858 1 + G A UCEC 118306854 + 118306834 118306874 41 CTGCTTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAA CTGCTTCAGTGATGACTCCCCATGATCAGGAATTACGGAAA < 41bp 1 0.679798543681697 1 0.432863712310791 experiment 0.640402912636605 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306854 chr10:118306858 stopgain 0.865 1 25 hm5C_associated_SNPs_44223 0 0 0 0 1 unknown 1 0.500231643895618 1 0.999536712208763 hm5C_site_43124 DeepMRMD:1;iRNA_m5C:0.999536712208763 Rheumatoid arthritis 43125 chr19 18053594 18053594 1 + C T UCEC 18053574 + 18053554 18053594 41 CGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCC CGGCAAGGCGCCGCGGGTGGCCACGTCCAGCAAGGTCACCT < 41bp 1 0.334263601928762 1 0.0779215693473816 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053574 chr19:18053594 nonsynonymous SNV 0.162 2 41 hm5C_associated_SNPs_44224 0 0 1 0 1 Ribosome 1 0.500231643921081 1 0.999536712157838 hm5C_site_43125 DeepMRMD:1;iRNA_m5C:0.999536712157838 43126 chr11 9463666 9463666 1 + A G UCEC 9463671 + 9463651 9463691 41 TGGTATCAGGCACTGACTCACGGTCTTAATGAAGAACAAAG TGGTATCAGGCACTGGCTCACGGTCTTAATGAAGAACAAAG < 41bp 1 0.223746616607579 1 0.21760630607605 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9463671 chr11:9463666 nonsynonymous SNV 0.994 2 16 hm5C_associated_SNPs_44226 0 0 1 0 2 Cytosol 1 0.50023164392103 1 0.999536712157939 hm5C_site_43126 DeepMRMD:1;iRNA_m5C:0.999536712157939 43127 chr2 10560065 10560065 1 + C T UCEC 10560051 + 10560031 10560071 41 AAGATCTACGCCAACTTCTTCCCCTACGGCGACGCTTCCAA AAGATCTACGCCAACTTCTTCCCCTACGGCGACGTTTCCAA < 41bp 1 0.09841662715927 1 0.133738547563553 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10560051 chr2:10560065 nonsynonymous SNV 0.994 2 35 hm5C_associated_SNPs_44227 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43127 DeepMRMD:1;iRNA_m5C:0.999536712157815 43128 chr16 842536 842536 1 + G A UCEC 842525 + 842505 842545 41 CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCACCGGGCAGA < 41bp 1 0.522830704244051 1 0.592785477638245 experiment 0.954338591511898 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842525 chr16:842536 nonsynonymous SNV 0.001 0 32 hm5C_associated_SNPs_44228 0 0 1 0 2 Nucleus 1 0.50023164179564 0.81442904472351 0.99953671640872 hm5C_site_43128 DeepMRMD:0.81442904472351;iRNA_m5C:0.99953671640872 43129 chr7 43590118 43590118 1 + G A UCEC 43590119 + 43590099 43590139 41 ACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTG ACAAGAAGGAGTACATCGAACGCATGGTGAAGTGGCGGGTG < 41bp 1 0.323258269001026 1 0.102189779281616 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HECW1 ENSG00000002746 CDS Human protein_coding chr7:43590119 chr7:43590118 synonymous SNV . 0 20 hm5C_associated_SNPs_44229 0 0 0 0 2 Cytosol 1 0.500231643760077 1 0.999536712479846 hm5C_site_43129 DeepMRMD:1;iRNA_m5C:0.999536712479846 43130 chr1 21904064 21904064 1 + G A UCEC 21904078 + 21904058 21904098 41 GCTCCTGCCAGCTCGGCAGGCAGCCTTGCTGCAGGCCCCCT GCTCCTACCAGCTCGGCAGGCAGCCTTGCTGCAGGCCCCCT < 41bp 1 0.540715948096463 1 0.69314432144165 experiment 0.918568103807073 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ALPL ENSG00000162551 CDS Human protein_coding chr1:21904078 chr1:21904064 nonsynonymous SNV 0.055 1 7 hm5C_associated_SNPs_44230 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921062 0.6137113571167 0.999536712157876 hm5C_site_43130 DeepMRMD:0.6137113571167;iRNA_m5C:0.999536712157876 43131 chr11 4156353 4156353 1 + A C UCEC 4156342 + 4156322 4156362 41 AAATTCCTGATGACCTGAAGCAACTTTATAAAACTGTGTGG AAATTCCTGATGACCTGAAGCAACTTTATAACACTGTGTGG < 41bp 1 0.30827176681258 1 0.215743660926819 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4156342 chr11:4156353 nonsynonymous SNV 0.999 4 32 hm5C_associated_SNPs_44231 0 0 1 0 1 Nucleus 1 0.500231643921091 1 0.999536712157818 hm5C_site_43131 DeepMRMD:1;iRNA_m5C:0.999536712157818 43132 chrX 117815667 117815667 1 + G A UCEC 117815659 + 117815639 117815679 41 TCTTCTATTGTGATATAGGTCAATGCTGGTCCATTAGCATA TCTTCTATTGTGATATAGGTCAATGCTGATCCATTAGCATA < 41bp 1 0.160302048947234 1 0.0500192940235138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117815659 chrX:117815667 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_44232 0 0 1 0 2 Cytosol 1 0.500231643760614 1 0.999536712478771 hm5C_site_43132 DeepMRMD:1;iRNA_m5C:0.999536712478771 43133 chr6 26091715 26091715 1 + C T UCEC 26091728 + 26091708 26091748 41 GGAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACC GGAAAGGTACAAGATTCGGGCCAGGCAGAACAGGGCCTACC < 41bp 1 0.353142089369923 1 0.182213842868805 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091728 chr6:26091715 nonsynonymous SNV 0.681 1 8 hm5C_associated_SNPs_44233 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643919799 1 0.999536712160401 hm5C_site_43133 DeepMRMD:1;iRNA_m5C:0.999536712160401 43134 chr6 26091715 26091715 1 + C T UCEC 26091729 + 26091709 26091749 41 GAAAGGCACAAGATTCGGGCCAGGCAGAACAGGGCCTACCT GAAAGGTACAAGATTCGGGCCAGGCAGAACAGGGCCTACCT < 41bp 1 0.412481404740793 1 0.311063826084137 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control HFE ENSG00000010704 CDS Human protein_coding chr6:26091729 chr6:26091715 nonsynonymous SNV 0.681 1 7 hm5C_associated_SNPs_44234 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644866149 1 0.999536710267703 hm5C_site_43134 DeepMRMD:1;iRNA_m5C:0.999536710267703 43135 chr14 105716516 105716516 1 + G A UCEC 105716527 + 105716507 105716547 41 ACAAGCCCCGCCTGGACTTTCCCCTGACCAAGAGGAAGGGC ACAAGCCCCACCTGGACTTTCCCCTGACCAAGAGGAAGGGC < 41bp 1 0.285747358978121 1 0.0497926473617554 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BTBD6 ENSG00000184887 CDS Human protein_coding chr14:105716527 chr14:105716516 nonsynonymous SNV 0.990 0 10 hm5C_associated_SNPs_44235 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43135 DeepMRMD:1;iRNA_m5C:0.999536712157815 43136 chr11 123988384 123988384 1 + G A UCEC 123988382 + 123988362 123988402 41 ACTCTGGTCTATCTCCAGTGCCGCTGAAGAGTATCTCTGTG ACTCTGGTCTATCTCCAGTGCCACTGAAGAGTATCTCTGTG < 41bp 1 0.10412234533324 1 0.0671935081481934 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VWA5A ENSG00000110002 CDS Human protein_coding chr11:123988382 chr11:123988384 synonymous SNV . 0 23 hm5C_associated_SNPs_44236 0 0 1 0 1 nucleus 1 0.500165376927023 1 0.999669246145953 hm5C_site_43136 DeepMRMD:1;iRNA_m5C:0.999669246145953 43137 chr19 35741400 35741400 1 + G A UCEC 35741406 + 35741386 35741426 41 CCCCGGCCAGCGTCGACAACCAGCTCAATGCCCAGCTGGCA CCCCGGCCAGCGTCAACAACCAGCTCAATGCCCAGCTGGCA < 41bp 1 0.48990842226674 1 0.580634355545044 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LSR ENSG00000105699 CDS Human protein_coding chr19:35741406 chr19:35741400 nonsynonymous SNV 0.576 3 15 hm5C_associated_SNPs_44238 0 0 1 0 0 chromatin 1 0.500231643921092 0.838731288909912 0.999536712157815 hm5C_site_43137 DeepMRMD:0.838731288909912;iRNA_m5C:0.999536712157815 43138 chr20 5163074 5163074 1 + C T UCEC 5163068 + 5163048 5163088 41 TACTGAGTCTGGTCAAGAAGCATTATCGACTGCAGTTCTAC TACTGAGTCTGGTCAAGAAGCATTATTGACTGCAGTTCTAC < 41bp 1 0.228760752061534 1 0.0921469032764435 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CDS2 ENSG00000101290 CDS Human protein_coding chr20:5163068 chr20:5163074 stopgain 1.000 1 27 hm5C_associated_SNPs_44239 0 0 1 0 2 chromatin 1 0.500232036471081 1 0.999535927057837 hm5C_site_43138 DeepMRMD:1;iRNA_m5C:0.999535927057837 43139 chrX 55033528 55033528 1 + C T UCEC 55033545 + 55033525 55033565 41 AAGCCTCTCCTGACATAGAGCTGCCTAGCCTACCACTGATG AAGTCTCTCCTGACATAGAGCTGCCTAGCCTACCACTGATG < 41bp 1 0.283548192450789 1 0.089118093252182 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control APEX2 ENSG00000169188 CDS Human protein_coding chrX:55033545 chrX:55033528 nonsynonymous SNV 0.040 0 4 hm5C_associated_SNPs_44240 0 0 1 0 0 Ribosome 1 0.50023164005777 1 0.99953671988446 hm5C_site_43139 DeepMRMD:1;iRNA_m5C:0.99953671988446 43140 chr15 75949311 75949311 1 + G A UCEC 75949304 + 75949284 75949324 41 TCTGCTCTGCCTATGCCAGGCGCCTTCGCCAAGGTGAAGGA TCTGCTCTGCCTATGCCAGGCGCCTTCACCAAGGTGAAGGA < 41bp 1 0.358031243224381 1 0.253836512565613 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX33 ENSG00000173548 CDS Human protein_coding chr15:75949304 chr15:75949311 nonsynonymous SNV 0.964 1 28 hm5C_associated_SNPs_44241 0 0 1 0 1 membrane 1 0.500231575931456 1 0.999536848137089 hm5C_site_43140 DeepMRMD:1;iRNA_m5C:0.999536848137089 43141 chr2 160623820 160623820 1 + C T UCEC 160623826 + 160623806 160623846 41 GATTCCGAAGAAGACGGAGACCATAACAGGACATTTGATAT GATTCCGAAGAAGATGGAGACCATAACAGGACATTTGATAT < 41bp 1 0.255498619099082 1 0.127755492925644 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160623826 chr2:160623820 nonsynonymous SNV 0.998 0 15 hm5C_associated_SNPs_44242 0 0 1 0 1 Cytosol 1 0.500231643925973 1 0.999536712148055 hm5C_site_43141 DeepMRMD:1;iRNA_m5C:0.999536712148055 43142 chrX 40450493 40450493 1 + C A UCEC 40450488 + 40450468 40450508 41 GTGCTTTTCAATGTTTAGGACCTTTCTTGGCCAGGACTCGC GTGCTTTTCAATGTTTAGGACCTTTATTGGCCAGGACTCGC < 41bp 1 0.0296726778452317 1 0.00979825854301453 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40450488 chrX:40450493 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_44244 0 0 1 0 1 Ribosome 1 0.500232251451933 1 0.999535497096133 hm5C_site_43142 DeepMRMD:1;iRNA_m5C:0.999535497096133 43143 chr11 93912993 93912993 1 + C T UCEC 93912995 + 93912975 93913015 41 GATCCTGAGAAACGACAGCACCGTGCCCGATCAGTTTCAGT GATCCTGAGAAACGACAGTACCGTGCCCGATCAGTTTCAGT < 41bp 1 0.157509588255771 1 0.108411699533463 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PANX1 ENSG00000110218 CDS Human protein_coding chr11:93912995 chr11:93912993 synonymous SNV . 0 19 hm5C_associated_SNPs_44246 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643918869 1 0.999536712162263 hm5C_site_43143 DeepMRMD:1;iRNA_m5C:0.999536712162263 43144 chrX 70356357 70356357 1 + C T UCEC 70356356 + 70356336 70356376 41 TGCCCCCAGAAGATGAGGAGCCGCCTGCTCCTACCCTGCTA TGCCCCCAGAAGATGAGGAGCTGCCTGCTCCTACCCTGCTA < 41bp 1 0.321507901120628 1 0.150167495012283 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MED12 ENSG00000184634 CDS Human protein_coding chrX:70356356 chrX:70356357 nonsynonymous SNV 0.991 3 22 hm5C_associated_SNPs_44247 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43144 DeepMRMD:1;iRNA_m5C:0.999536712157815 43145 chr16 1397792 1397792 1 + G A UCEC 1397801 + 1397781 1397821 41 AGGTGCTGCACGCCGCGGACCTGCTCCCCCTGGACGCCAAC AGGTGCTGCACACCGCGGACCTGCTCCCCCTGGACGCCAAC < 41bp 1 0.248609694995046 1 0.09564408659935 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1397801 chr16:1397792 nonsynonymous SNV 0.693 5 12 hm5C_associated_SNPs_44248 0 0 0 0 2 chromatin 1 0.500231643807854 1 0.999536712384293 hm5C_site_43145 DeepMRMD:1;iRNA_m5C:0.999536712384293 43146 chr12 56622964 56622964 1 + C T UCEC 56622945 + 56622925 56622965 41 TGCAGGCCCGCCTGGCCCTTCCAGCAACCCTGTTAGTAACG TGCAGGCCCGCCTGGCCCTTCCAGCAACCCTGTTAGTAATG < 41bp 1 0.254698606889288 1 0.32562130689621 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NABP2 ENSG00000139579 CDS Human protein_coding chr12:56622945 chr12:56622964 synonymous SNV . 0 40 hm5C_associated_SNPs_44249 0 0 1 0 0 Ribosome 1 0.500231643991084 1 0.999536712017833 hm5C_site_43146 DeepMRMD:1;iRNA_m5C:0.999536712017833 43147 chr1 109801322 109801322 1 + C T UCEC 109801320 + 109801300 109801340 41 CGGTGGGCCAGCCGCCAGGGCCCGGGGGCGGGCCGCCCTTC CGGTGGGCCAGCCGCCAGGGCCTGGGGGCGGGCCGCCCTTC < 41bp 1 0.276987459441438 1 0.62649393081665 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801320 chr1:109801322 synonymous SNV . 0 23 hm5C_associated_SNPs_44250 0 0 1 0 0 Endoplasmic reticulum 1 0.500231646756345 0.7470121383667 0.99953670648731 hm5C_site_43147 DeepMRMD:0.7470121383667;iRNA_m5C:0.99953670648731 43148 chr1 109801322 109801322 1 + C T UCEC 109801328 + 109801308 109801348 41 CAGCCGCCAGGGCCCGGGGGCGGGCCGCCCTTCCTGCCCTC CAGCCGCCAGGGCCTGGGGGCGGGCCGCCCTTCCTGCCCTC < 41bp 1 0.334374651366169 1 0.862344741821289 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109801328 chr1:109801322 synonymous SNV . 0 15 hm5C_associated_SNPs_44251 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921091 0.275310516357422 0.999536712157817 hm5C_site_43148 DeepMRMD:0.275310516357422;iRNA_m5C:0.999536712157817 43149 chr2 32613941 32613941 1 + G A UCEC 32613943 + 32613923 32613963 41 GTGGCGTCCTCAGTGATGGACAGATTGTCTTACCTCTTACC GTGGCGTCCTCAGTGATGAACAGATTGTCTTACCTCTTACC < 41bp 1 0.131374902971965 1 0.774788618087769 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32613943 chr2:32613941 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_44252 0 0 1 0 1 Nucleus 1 0.50023164392021 0.450422763824462 0.99953671215958 hm5C_site_43149 DeepMRMD:0.450422763824462;iRNA_m5C:0.99953671215958 43150 chr20 4163344 4163344 1 + C T UCEC 4163341 + 4163321 4163361 41 TACCCACCTGAGCTCTGGTACCGCAAGATCTGCGGCTTTGA TACCCACCTGAGCTCTGGTACCGTAAGATCTGCGGCTTTGA < 41bp 1 0.157033246337321 1 0.0549643635749817 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMOX ENSG00000088826 CDS Human protein_coding chr20:4163341 chr20:4163344 synonymous SNV . 0 24 hm5C_associated_SNPs_44253 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43150 DeepMRMD:1;iRNA_m5C:0.999536712157815 43151 chr11 60703957 60703957 1 + G A UCEC 60703977 + 60703957 60703997 41 GCCACTGACCCCACCTCCCCCCAGCCCCACAACTGGGTCTG ACCACTGACCCCACCTCCCCCCAGCCCCACAACTGGGTCTG < 41bp 1 0.0967734844195722 1 0.57856297492981 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60703977 chr11:60703957 nonsynonymous SNV 0.006 0 1 hm5C_associated_SNPs_44254 0 0 1 0 0 Ribosome 1 0.500231634862856 0.84287405014038 0.999536730274289 hm5C_site_43151 DeepMRMD:0.84287405014038;iRNA_m5C:0.999536730274289 43152 chr7 43840157 43840157 1 + C T UCEC 43840161 + 43840141 43840181 41 GACCTGCTGAAAGGGTCGCTCCTCTTCACAGGTCAGTGCTA GACCTGCTGAAAGGGTTGCTCCTCTTCACAGGTCAGTGCTA < 41bp 1 0.134661841189777 1 0.0855674147605896 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BLVRA ENSG00000106605 CDS Human protein_coding chr7:43840161 chr7:43840157 nonsynonymous SNV 0.693 2 17 hm5C_associated_SNPs_44255 0 0 1 0 2 Ribosome 1 0.500231682952364 1 0.999536634095273 hm5C_site_43152 DeepMRMD:1;iRNA_m5C:0.999536634095273 43153 chr19 11241989 11241989 1 + G A UCEC 11242009 + 11241989 11242029 41 GTGAACATCTGCCTGGAGTCCCGTCCCTGCCCAGAACCCTT ATGAACATCTGCCTGGAGTCCCGTCCCTGCCCAGAACCCTT < 41bp 1 0.0854254573709714 1 0.147691607475281 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LDLR ENSG00000130164 CDS Human protein_coding chr19:11242009 chr19:11241989 nonsynonymous SNV 0.028 2 1 hm5C_associated_SNPs_44256 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921095 1 0.99953671215781 hm5C_site_43153 DeepMRMD:1;iRNA_m5C:0.99953671215781 43154 chr13 99047582 99047582 1 + G A UCEC 99047580 + 99047560 99047600 41 CGAAGGTTTCCGCCGGGGAGCCGGGGTCGCACCCGAGCCCT CGAAGGTTTCCGCCGGGGAGCCAGGGTCGCACCCGAGCCCT < 41bp 1 0.584570398269714 1 0.582645297050476 experiment 0.830859203460572 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99047580 chr13:99047582 synonymous SNV . 0 23 hm5C_associated_SNPs_44257 0 0 0 0 0 Cytosol 1 0.500231504790894 0.834709405899048 0.999536990418211 hm5C_site_43154 DeepMRMD:0.834709405899048;iRNA_m5C:0.999536990418211 43155 chr17 7814186 7814186 1 + G A UCEC 7814192 + 7814172 7814212 41 CGCCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGGCC CGCCGGGTCCCTACACTACACCTCCGGGGTACGGGGCGGCC < 41bp 1 0.103236491229822 1 0.0317938029766083 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814192 chr17:7814186 nonsynonymous SNV 0.998 2 15 hm5C_associated_SNPs_44258 0 0 0 0 1 Cytosol 1 0.500231643937116 1 0.999536712125768 hm5C_site_43155 DeepMRMD:1;iRNA_m5C:0.999536712125768 43156 chr1 214814422 214814422 1 + A G UCEC 214814421 + 214814401 214814441 41 AGAACAAGGAAAAAGAGCTGCAACTTTTAAATGATAAGGTA AGAACAAGGAAAAAGAGCTGCGACTTTTAAATGATAAGGTA < 41bp 1 0.197017949214917 1 0.237648010253906 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CENPF ENSG00000117724 CDS Human protein_coding chr1:214814421 chr1:214814422 nonsynonymous SNV 0.081 1 22 hm5C_associated_SNPs_44260 0 0 1 0 0 Nucleus 1 0.500231607292652 1 0.999536785414695 hm5C_site_43156 DeepMRMD:1;iRNA_m5C:0.999536785414695 43157 chr4 113352559 113352559 1 + C A UCEC 113352571 + 113352551 113352591 41 GGTGGACACTCAGTGTTCCACTGCCTTGTCTGAGGAGCTAG GGTGGACAATCAGTGTTCCACTGCCTTGTCTGAGGAGCTAG < 41bp 1 0.435641676124562 1 0.147993177175522 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113352571 chr4:113352559 nonsynonymous SNV 0.084 1 9 hm5C_associated_SNPs_44261 0 0 0 0 0 chromatin 1 0.500231584501638 1 0.999536830996724 hm5C_site_43157 DeepMRMD:1;iRNA_m5C:0.999536830996724 43158 chr21 46624580 46624580 1 + C T UCEC 46624567 + 46624547 46624587 41 GCAGCCTTTACCACGGGGACCACCTTTCCAGGGCCATGTAC GCAGCCTTTACCACGGGGACCACCTTTCCAGGGTCATGTAC < 41bp 1 0.334441664930867 1 0.0968383252620697 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46624567 chr21:46624580 nonsynonymous SNV 1.000 3 34 hm5C_associated_SNPs_44262 0 0 0 1 0 Nucleus 1 0.500231643921089 1 0.999536712157822 hm5C_site_43158 DeepMRMD:1;iRNA_m5C:0.999536712157822 43159 chr3 183435509 183435509 1 + G T UCEC 183435490 + 183435470 183435510 41 TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAAGG TATTATCAAAGAACAGTTTGCTCTTGAAATGAAGAATAATG < 41bp 1 0.06094342370789 1 0.0535396635532379 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435490 chr3:183435509 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44263 0 0 1 0 2 Nucleus 1 0.500219281517585 1 0.99956143696483 hm5C_site_43159 DeepMRMD:1;iRNA_m5C:0.99956143696483 43160 chr1 150280540 150280540 1 + C T UCEC 150280549 + 150280529 150280569 41 ATTATGAGAAGCCATGCCGCCGGCGACAGAGGGAAAGCTAT ATTATGAGAAGTCATGCCGCCGGCGACAGAGGGAAAGCTAT < 41bp 1 0.656535563551401 1 0.742811799049377 experiment 0.686928872897198 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRPS21 ENSG00000187145 CDS Human other chr1:150280549 chr1:150280540 nonsynonymous SNV 0.957 0 12 hm5C_associated_SNPs_44264 0 0 1 0 1 Cytosol 1 0.500231643921233 0.514376401901246 0.999536712157534 hm5C_site_43160 DeepMRMD:0.514376401901246;iRNA_m5C:0.999536712157534 43161 chr1 22331981 22331981 1 + G A UCEC 22331969 + 22331949 22331989 41 CAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG CAGTATGAGAAAAGTGGAAGCTTCTACCACACATGTGGCGG < 41bp 1 0.181337865017214 1 0.194220036268234 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331969 chr1:22331981 synonymous SNV . 0 33 hm5C_associated_SNPs_44265 0 0 0 0 2 Endoplasmic reticulum 1 0.500231949484859 1 0.999536101030282 hm5C_site_43161 DeepMRMD:1;iRNA_m5C:0.999536101030282 43162 chr1 22331981 22331981 1 + G A UCEC 22331972 + 22331952 22331992 41 TATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAG TATGAGAAAAGTGGAAGCTTCTACCACACATGTGGCGGTAG < 41bp 1 0.302027045575605 1 0.333017081022263 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331972 chr1:22331981 synonymous SNV . 0 30 hm5C_associated_SNPs_44266 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921095 1 0.999536712157811 hm5C_site_43162 DeepMRMD:1;iRNA_m5C:0.999536712157811 43163 chr1 22331981 22331981 1 + G A UCEC 22331975 + 22331955 22331995 41 GAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCT GAGAAAAGTGGAAGCTTCTACCACACATGTGGCGGTAGCCT < 41bp 1 0.444022891915214 1 0.121639579534531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331975 chr1:22331981 synonymous SNV . 0 27 hm5C_associated_SNPs_44267 0 0 0 0 2 Endoplasmic reticulum 1 0.50023163657571 1 0.999536726848581 hm5C_site_43163 DeepMRMD:1;iRNA_m5C:0.999536726848581 43164 chr1 22331981 22331981 1 + G A UCEC 22331976 + 22331956 22331996 41 AGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTC AGAAAAGTGGAAGCTTCTACCACACATGTGGCGGTAGCCTC < 41bp 1 0.572211527624225 1 0.214190512895584 experiment 0.85557694475155 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331976 chr1:22331981 synonymous SNV . 0 26 hm5C_associated_SNPs_44268 0 0 0 0 2 Endoplasmic reticulum 1 0.500231783077538 1 0.999536433844924 hm5C_site_43164 DeepMRMD:1;iRNA_m5C:0.999536433844924 43165 chr1 22331981 22331981 1 + G A UCEC 22331978 + 22331958 22331998 41 AAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCAT AAAAGTGGAAGCTTCTACCACACATGTGGCGGTAGCCTCAT < 41bp 1 0.544291504295783 1 0.177401810884476 experiment 0.911416991408435 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331978 chr1:22331981 synonymous SNV . 0 24 hm5C_associated_SNPs_44269 0 0 0 0 2 Endoplasmic reticulum 1 0.50023253345719 1 0.999534933085621 hm5C_site_43165 DeepMRMD:1;iRNA_m5C:0.999534933085621 43166 chr1 22331981 22331981 1 + G A UCEC 22331980 + 22331960 22332000 41 AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG AAGTGGAAGCTTCTACCACACATGTGGCGGTAGCCTCATCG < 41bp 1 0.475111714969339 1 0.0516816973686218 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331980 chr1:22331981 synonymous SNV . 0 22 hm5C_associated_SNPs_44270 0 0 0 0 2 Endoplasmic reticulum 1 0.500231645978338 1 0.999536708043323 hm5C_site_43166 DeepMRMD:1;iRNA_m5C:0.999536708043323 43167 chr1 22331981 22331981 1 + G A UCEC 22331993 + 22331973 22332013 41 TACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGT TACCACACATGTGGCGGTAGCCTCATCGCCCCCGATTGGGT < 41bp 1 0.26644820239624 1 0.0573326051235199 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331993 chr1:22331981 synonymous SNV . 0 9 hm5C_associated_SNPs_44272 0 0 0 0 2 Endoplasmic reticulum 1 0.500231885270676 1 0.999536229458648 hm5C_site_43167 DeepMRMD:1;iRNA_m5C:0.999536229458648 43168 chr1 22331981 22331981 1 + G A UCEC 22331994 + 22331974 22332014 41 ACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT ACCACACATGTGGCGGTAGCCTCATCGCCCCCGATTGGGTT < 41bp 1 0.527792048098992 1 0.15044379234314 experiment 0.944415903802017 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331994 chr1:22331981 synonymous SNV . 0 8 hm5C_associated_SNPs_44273 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643981254 1 0.999536712037493 hm5C_site_43168 DeepMRMD:1;iRNA_m5C:0.999536712037493 43169 chr1 22331981 22331981 1 + G A UCEC 22331996 + 22331976 22332016 41 CACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT CACACATGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGT < 41bp 1 0.382313427222394 1 0.403843611478806 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331996 chr1:22331981 synonymous SNV . 0 6 hm5C_associated_SNPs_44274 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_43169 DeepMRMD:1;iRNA_m5C:0.999536712157814 43170 chr1 22331981 22331981 1 + G A UCEC 22331999 + 22331979 22332019 41 ACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC ACATGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGAC < 41bp 1 0.458860179697657 1 0.697626650333405 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331999 chr1:22331981 synonymous SNV . 0 3 hm5C_associated_SNPs_44275 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920927 0.60474669933319 0.999536712158147 hm5C_site_43170 DeepMRMD:0.60474669933319;iRNA_m5C:0.999536712158147 43171 chr1 22331981 22331981 1 + G A UCEC 22332001 + 22331981 22332021 41 GTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG ATGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTG < 41bp 1 0.383927284389256 1 0.388680011034012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332001 chr1:22331981 synonymous SNV . 0 1 hm5C_associated_SNPs_44276 0 0 0 0 2 Endoplasmic reticulum 1 0.500231648087915 1 0.99953670382417 hm5C_site_43171 DeepMRMD:1;iRNA_m5C:0.99953670382417 43172 chr21 46596575 46596575 1 + C T UCEC 46596559 + 46596539 46596579 41 AGCCTATTCCCAGTGAGGGTCTTCAGCTGCATTTACCGCAG AGCCTATTCCCAGTGAGGGTCTTCAGCTGCATTTACTGCAG < 41bp 1 0.345260529896979 1 0.64653480052948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46596559 chr21:46596575 nonsynonymous SNV 0.972 4 37 hm5C_associated_SNPs_44277 0 0 1 0 0 Nucleus 1 0.50023164392055 0.70693039894104 0.999536712158899 hm5C_site_43172 DeepMRMD:0.70693039894104;iRNA_m5C:0.999536712158899 43173 chr6 151670269 151670269 1 + G T UCEC 151670287 + 151670267 151670307 41 AAGCCACGCAGAAATTTCTCCCCCAGCCGAATCTGGCCAAG AATCCACGCAGAAATTTCTCCCCCAGCCGAATCTGGCCAAG < 41bp 1 0.358727041725742 1 0.168045908212662 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151670287 chr6:151670269 nonsynonymous SNV 0.003 1 3 hm5C_associated_SNPs_44279 0 0 0 0 0 Ribosome 1 0.500231643922636 1 0.999536712154727 hm5C_site_43173 DeepMRMD:1;iRNA_m5C:0.999536712154727 43174 chr9 140002990 140002990 1 + G A UCEC 140002991 + 140002971 140003011 41 AAACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAG AAACCTGCTCAGCCTGGATACCTACGTGTTCAACACCGAAG < 41bp 1 0.0564913690182473 1 0.135922700166702 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002991 chr9:140002990 nonsynonymous SNV 0.430 1 20 hm5C_associated_SNPs_44280 0 0 1 1 0 Ribosome 1 0.500231614501549 1 0.999536770996903 hm5C_site_43174 DeepMRMD:1;iRNA_m5C:0.999536770996903 43175 chr9 140002990 140002990 1 + G A UCEC 140002992 + 140002972 140003012 41 AACCTGCTCAGCCTGGATGCCTACGTGTTCAACACCGAAGC AACCTGCTCAGCCTGGATACCTACGTGTTCAACACCGAAGC < 41bp 1 0.567948441756043 1 0.0895808041095734 experiment 0.864103116487914 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002992 chr9:140002990 nonsynonymous SNV 0.430 1 19 hm5C_associated_SNPs_44281 0 0 1 1 0 Ribosome 1 0.500231643979563 1 0.999536712040875 hm5C_site_43175 DeepMRMD:1;iRNA_m5C:0.999536712040875 43176 chr7 149426298 149426298 1 + C T UCEC 149426306 + 149426286 149426326 41 GGCTGAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG GGCTGAGGCCTGTGAGTCAGCCGTCTCGGGCAGGGTAGGGG < 41bp 1 0.0381036396128005 1 0.203484386205673 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149426306 chr7:149426298 synonymous SNV . 0 13 hm5C_associated_SNPs_44282 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_43176 DeepMRMD:1;iRNA_m5C:0.999536712157815 43177 chr5 82834806 82834806 1 + G T UCEC 82834788 + 82834768 82834808 41 CATATCTGACTCAGAAGGACCCAGTAGCACCATGGTCAGCA CATATCTGACTCAGAAGGACCCAGTAGCACCATGGTCATCA < 41bp 1 0.0684991951751839 1 0.0750354528427124 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82834788 chr5:82834806 nonsynonymous SNV 0.172 2 39 hm5C_associated_SNPs_44283 0 0 1 0 0 Ribosome 1 0.50023164390575 1 0.999536712188499 hm5C_site_43177 DeepMRMD:1;iRNA_m5C:0.999536712188499 43178 chr6 34730463 34730463 1 + G A UCEC 34730453 + 34730433 34730473 41 ATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGAC ATCAGAAATGGATGGAAGAGCAGGCTCAGAACCTGATTGAC < 41bp 1 0.647154781242612 1 0.782526731491089 experiment 0.705690437514776 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNRPC ENSG00000124562 CDS Human protein_coding chr6:34730453 chr6:34730463 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_44284 0 0 1 0 2 Ribosome 1 0.50023163973778 0.434946537017822 0.99953672052444 hm5C_site_43178 DeepMRMD:0.434946537017822;iRNA_m5C:0.99953672052444 43179 chr16 2577852 2577852 1 + C T UCEC 2577853 + 2577833 2577873 41 CACCTCCGCTCCTTCGAGGCCGATGCCTTCCAGGACTTGCT CACCTCCGCTCCTTCGAGGTCGATGCCTTCCAGGACTTGCT < 41bp 1 0.152469794065485 1 0.342213988304138 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577853 chr16:2577852 nonsynonymous SNV 0.907 1 20 hm5C_associated_SNPs_44285 0 0 1 0 1 Ribosome 1 0.500231643899338 1 0.999536712201324 hm5C_site_43179 DeepMRMD:1;iRNA_m5C:0.999536712201324 43180 chr12 122260568 122260568 1 + G A UCEC 122260559 + 122260539 122260579 41 CCGGAGCCCCTTGCCGAGGACCACCCCCCGCATACTCCAGG CCGGAGCCCCTTGCCGAGGACCACCCCCCACATACTCCAGG < 41bp 1 0.0247525319815173 1 0.051187127828598 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SETD1B ENSG00000139718 CDS Human protein_coding chr12:122260559 chr12:122260568 synonymous SNV . 0 30 hm5C_associated_SNPs_44286 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43180 DeepMRMD:1;iRNA_m5C:0.999536712157815 43181 chr11 830660 830660 1 + G A UCEC 830674 + 830654 830694 41 GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC GAGCTGAAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC < 41bp 1 0.555545118958426 1 0.488420993089676 experiment 0.888909762083148 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830674 chr11:830660 nonsynonymous SNV 1.000 2 7 hm5C_associated_SNPs_44287 0 0 1 0 2 Cytosol 1 0.500221848400898 1 0.999556303198204 hm5C_site_43181 DeepMRMD:1;iRNA_m5C:0.999556303198204 43182 chr11 58347083 58347083 1 + G A UCEC 58347094 + 58347074 58347114 41 GCAAGAAGAGTCCGCGACTCCTGTGAGTAACAGTCTTTCAG GCAAGAAGAATCCGCGACTCCTGTGAGTAACAGTCTTTCAG < 41bp 1 0.673491391848008 1 0.138572663068771 experiment 0.653017216303983 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58347094 chr11:58347083 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_44288 0 0 1 0 1 chromatin 1 0.500231643921102 1 0.999536712157796 hm5C_site_43182 DeepMRMD:1;iRNA_m5C:0.999536712157796 43183 chr6 86176875 86176875 1 + C T UCEC 86176884 + 86176864 86176904 41 AAACATTAAAGCAAAGGGGCCACTAGCATCTCAAATATCAG AAACATTAAAGTAAAGGGGCCACTAGCATCTCAAATATCAG < 41bp 1 0.14975571716142 1 0.114269822835922 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NT5E ENSG00000135318 CDS Human protein_coding chr6:86176884 chr6:86176875 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_44289 0 0 0 0 1 nucleus 1 0.500285132905281 1 0.999429734189438 hm5C_site_43183 DeepMRMD:1;iRNA_m5C:0.999429734189438 43184 chr1 54562122 54562122 1 + G A UCEC 54562129 + 54562109 54562149 41 TGCCAGTCGGCACGTTTGTACAGACCCACAAAAAGTGACCT TGCCAGTCGGCACATTTGTACAGACCCACAAAAAGTGACCT < 41bp 1 0.292675226049981 1 0.369399189949036 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCEANC2 ENSG00000116205 CDS Human protein_coding chr1:54562129 chr1:54562122 synonymous SNV . 0 14 hm5C_associated_SNPs_44290 0 0 0 0 0 chromatin 1 0.500232156676968 1 0.999535686646063 hm5C_site_43184 DeepMRMD:1;iRNA_m5C:0.999535686646063 43185 chr17 80559253 80559253 1 + G A UCEC 80559268 + 80559248 80559288 41 ACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC ACAACAGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATC < 41bp 1 0.270452658638856 1 0.309814751148224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80559268 chr17:80559253 nonsynonymous SNV 0.001 3 6 hm5C_associated_SNPs_44292 0 0 1 0 1 Cytosol 1 0.50023164392106 1 0.999536712157881 hm5C_site_43185 DeepMRMD:1;iRNA_m5C:0.999536712157881 43186 chrX 73047046 73047046 1 + C T UCEC 73047047 - 73047027 73047067 41 TCAGAGCAAGCATTGTGGAGCGGTTCCTTATGCCAGGCTGC TCAGAGCAAGCATTGTGGAGCAGTTCCTTATGCCAGGCTGC < 41bp 1 0.0902930277495049 1 0.0749892294406891 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047047 chrX:73047046 . . 0 22 hm5C_associated_SNPs_44293 0 0 1 0 0 unknown 1 0.500231643921057 1 0.999536712157885 hm5C_site_43186 DeepMRMD:1;iRNA_m5C:0.999536712157885 43187 chr17 43311076 43311076 1 + G T UCEC 43311084 + 43311064 43311104 41 CTCGAGTACCTGGCCTTTGCCCAGTGCTCTGTCACGTAAGC CTCGAGTACCTGTCCTTTGCCCAGTGCTCTGTCACGTAAGC < 41bp 1 0.218614960534736 1 0.582166731357574 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43311084 chr17:43311076 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_44294 0 0 1 0 2 chromatin 1 0.500228303695269 0.835666537284852 0.999543392609462 hm5C_site_43187 DeepMRMD:0.835666537284852;iRNA_m5C:0.999543392609462 43188 chr11 67018209 67018209 1 + G A UCEC 67018208 + 67018188 67018228 41 AGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAGAGAA AGGTCTGGATGTCTGTCTTCCACTACCTCAGCCGCAGAGAA < 41bp 1 0.434487433531584 1 0.278157413005829 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67018208 chr11:67018209 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_44295 0 0 1 0 1 Cytosol 1 0.500231643874889 1 0.999536712250221 hm5C_site_43188 DeepMRMD:1;iRNA_m5C:0.999536712250221 43189 chr16 83998901 83998901 1 + C T UCEC 83998898 + 83998878 83998918 41 CCCTTCTCGCTGTGGGCCCGCAACGTGGTCCTCGCCACAGG CCCTTCTCGCTGTGGGCCCGCAATGTGGTCCTCGCCACAGG < 41bp 1 0.402512470610479 1 0.152921408414841 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83998898 chr16:83998901 synonymous SNV . 0 24 hm5C_associated_SNPs_44296 0 0 0 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_43189 DeepMRMD:1;iRNA_m5C:0.999536712157815 43190 chr1 31899637 31899637 1 + C A UCEC 31899651 + 31899631 31899671 41 TGTCTGCGTGTCCATCGCTGCTGTCCTGCCCAAGGTCCAGG TGTCTGAGTGTCCATCGCTGCTGTCCTGCCCAAGGTCCAGG < 41bp 1 0.169546179911756 1 0.0425865054130554 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31899651 chr1:31899637 stopgain 0.443 0 7 hm5C_associated_SNPs_44297 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644688057 1 0.999536710623886 hm5C_site_43190 DeepMRMD:1;iRNA_m5C:0.999536710623886 43191 chr1 109806279 109806279 1 + G A UCEC 109806280 + 109806260 109806300 41 GCAGCAGCCTGGTGGCCTGGCATGGCCTCTCGCTGCCCATC GCAGCAGCCTGGTGGCCTGACATGGCCTCTCGCTGCCCATC < 41bp 1 0.319966000802807 1 0.137721925973892 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806280 chr1:109806279 stopgain 1.000 0 20 hm5C_associated_SNPs_44298 0 0 1 0 1 Endoplasmic reticulum 1 0.50023164162549 1 0.999536716749019 hm5C_site_43191 DeepMRMD:1;iRNA_m5C:0.999536716749019 43192 chr16 89623349 89623349 1 + C T UCEC 89623367 + 89623347 89623387 41 CTCTCATTGGCCCGCCGCCCCATGGGCCGAAGAAAATGATC CTTTCATTGGCCCGCCGCCCCATGGGCCGAAGAAAATGATC < 41bp 1 0.514488224265304 1 0.293934464454651 experiment 0.971023551469392 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89623367 chr16:89623349 nonsynonymous SNV 0.846 5 3 hm5C_associated_SNPs_44299 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43192 DeepMRMD:1;iRNA_m5C:0.999536712157815 43193 chr11 130003559 130003559 1 + G A UCEC 130003563 + 130003543 130003583 41 TGATTGAAGAAAGGAGGAACCAAAGCCTCTCTCTGCTCTAC TGATTGAAGAAAGGAGAAACCAAAGCCTCTCTCTGCTCTAC < 41bp 1 0.517827636257691 1 0.479012042284012 experiment 0.964344727484618 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003563 chr11:130003559 synonymous SNV . 0 17 hm5C_associated_SNPs_44300 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643922736 1 0.999536712154528 hm5C_site_43193 DeepMRMD:1;iRNA_m5C:0.999536712154528 43194 chr11 130003559 130003559 1 + G A UCEC 130003575 + 130003555 130003595 41 GGAGGAACCAAAGCCTCTCTCTGCTCTACAAAGTACCTTAT GGAGAAACCAAAGCCTCTCTCTGCTCTACAAAGTACCTTAT < 41bp 1 0.472057790550075 1 0.589008510112762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130003575 chr11:130003559 synonymous SNV . 0 5 hm5C_associated_SNPs_44301 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643227073 0.821982979774476 0.999536713545855 hm5C_site_43194 DeepMRMD:0.821982979774476;iRNA_m5C:0.999536713545855 43195 chr12 110770420 110770420 1 + G T UCEC 110770433 + 110770413 110770453 41 GGACAGAGTGGAAGGTGATACTTGTTCCCTTAATGAGTTTA GGACAGATTGGAAGGTGATACTTGTTCCCTTAATGAGTTTA < 41bp 1 0.164316637005355 1 0.108443975448608 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110770433 chr12:110770420 nonsynonymous SNV 0.985 1 8 hm5C_associated_SNPs_44302 0 0 1 0 1 Nucleus 1 0.500231643083844 1 0.999536713832313 hm5C_site_43195 DeepMRMD:1;iRNA_m5C:0.999536713832313 43196 chr2 190531698 190531698 1 + G A UCEC 190531711 + 190531691 190531731 41 ACATGAAGGAAGTAATTCAGCAGTTCATTGATGTCCTGAGT ACATGAAAGAAGTAATTCAGCAGTTCATTGATGTCCTGAGT < 41bp 1 0.387469775845626 1 0.340381324291229 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ASNSD1 ENSG00000138381 CDS Human protein_coding chr2:190531711 chr2:190531698 synonymous SNV . 0 8 hm5C_associated_SNPs_44303 0 0 1 0 0 chromatin 1 0.500231643776368 1 0.999536712447264 hm5C_site_43196 DeepMRMD:1;iRNA_m5C:0.999536712447264 43197 chr19 40715032 40715032 1 + C A UCEC 40715040 + 40715020 40715060 41 TAAGATCACAGTCCAGGCCTCTCCAACTCTGGATAAGCGGA TAAGATCACAGTACAGGCCTCTCCAACTCTGGATAAGCGGA < 41bp 1 0.208198118240459 1 0.907299935817719 experiment 1 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40715040 chr19:40715032 nonsynonymous SNV . 0 13 hm5C_associated_SNPs_44304 0 0 0 0 2 Endoplasmic reticulum 1 0.500231642284289 0.185400128364562 0.999536715431422 hm5C_site_43197 DeepMRMD:0.185400128364562;iRNA_m5C:0.999536715431422 43198 chr19 50985731 50985731 1 + G A UCEC 50985739 + 50985719 50985759 41 GGTGTCTCCTGCGCCCGCCTCCCCCATGGCCCCATGCAGCC GGTGTCTCCTGCACCCGCCTCCCCCATGGCCCCATGCAGCC < 41bp 1 0.135323494745787 1 0.295793533325195 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EMC10 ENSG00000161671 CDS Human protein_coding chr19:50985739 chr19:50985731 nonsynonymous SNV 0.000 0 13 hm5C_associated_SNPs_44305 0 0 1 0 0 Cytosol 1 0.500231646288273 1 0.999536707423453 hm5C_site_43198 DeepMRMD:1;iRNA_m5C:0.999536707423453 43199 chr7 142561977 142561977 1 + G A UCEC 142561972 + 142561952 142561992 41 TACCGTCAGGCTGAGGAGCCCGACAGCCCTGACAGCGTTTC TACCGTCAGGCTGAGGAGCCCGACAACCCTGACAGCGTTTC < 41bp 1 0.657290911155307 1 0.262238800525665 experiment 0.685418177689386 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561972 chr7:142561977 nonsynonymous SNV 0.885 1 26 hm5C_associated_SNPs_44306 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157813 hm5C_site_43199 DeepMRMD:1;iRNA_m5C:0.999536712157813 43200 chr17 7479917 7479917 1 + C T UCEC 7479907 + 7479887 7479927 41 TGTCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGT TGTCACGCCTGTATCGGGGGCACCAACGTGTGTGCTGAGGT < 41bp 1 0.467021867144841 1 0.342097103595734 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479907 chr17:7479917 nonsynonymous SNV 0.977 3 31 hm5C_associated_SNPs_44307 0 0 1 0 2 Cytosol 1 0.50023155967583 1 0.999536880648339 hm5C_site_43200 DeepMRMD:1;iRNA_m5C:0.999536880648339 43201 chr17 7479917 7479917 1 + C T UCEC 7479909 + 7479889 7479929 41 TCACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGC TCACGCCTGTATCGGGGGCACCAACGTGTGTGCTGAGGTGC < 41bp 1 0.117697454018347 1 0.176065295934677 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479909 chr17:7479917 nonsynonymous SNV 0.977 3 29 hm5C_associated_SNPs_44308 0 0 1 0 2 Cytosol 1 0.500229450840663 1 0.999541098318674 hm5C_site_43201 DeepMRMD:1;iRNA_m5C:0.999541098318674 43202 chr17 7479917 7479917 1 + C T UCEC 7479910 + 7479890 7479930 41 CACGCCTGTATCGGGGGCACCAACGTGCGTGCTGAGGTGCA CACGCCTGTATCGGGGGCACCAACGTGTGTGCTGAGGTGCA < 41bp 1 0.418037717099291 1 0.305774867534637 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479910 chr17:7479917 nonsynonymous SNV 0.977 3 28 hm5C_associated_SNPs_44309 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43202 DeepMRMD:1;iRNA_m5C:0.999536712157815 43203 chr1 43893255 43893255 1 + C T UCEC 43893251 + 43893231 43893271 41 CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGCGTCAG CACCATTCCGTCGAGACTTACAGGTTTACGCTGGGCGTCAG < 41bp 1 0.373139101271622 1 0.883818030357361 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43893251 chr1:43893255 nonsynonymous SNV 0.889 0 25 hm5C_associated_SNPs_44310 0 0 1 0 1 Cytosol 1 0.500231643921093 0.232363939285278 0.999536712157814 hm5C_site_43203 DeepMRMD:0.232363939285278;iRNA_m5C:0.999536712157814 43204 chr11 120099665 120099665 1 + G T UCEC 120099678 + 120099658 120099698 41 ACGGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCC ACGGGAATCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCC < 41bp 1 0.683239564835318 1 0.760499536991119 experiment 0.633520870329363 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099678 chr11:120099665 nonsynonymous SNV 0.116 1 8 hm5C_associated_SNPs_44311 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.479000926017762 0.999536712157815 hm5C_site_43204 DeepMRMD:0.479000926017762;iRNA_m5C:0.999536712157815 43205 chr11 120099665 120099665 1 + G T UCEC 120099680 + 120099660 120099700 41 GGGAAGCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG GGGAATCCCTGCGTCTGCCGCTATGGCCTGAGCCTGGCCTG < 41bp 1 0.528513798652639 1 0.561908960342407 experiment 0.942972402694723 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OAF ENSG00000184232 CDS Human protein_coding chr11:120099680 chr11:120099665 nonsynonymous SNV 0.116 1 6 hm5C_associated_SNPs_44312 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.876182079315186 0.999536712157815 hm5C_site_43205 DeepMRMD:0.876182079315186;iRNA_m5C:0.999536712157815 43206 chrX 73044235 73044235 1 + G A UCEC 73044221 - 73044201 73044241 41 AAGGCACCATATAAATGTAACTGTTGATTTTCTCACTTGGT AAGGCATCATATAAATGTAACTGTTGATTTTCTCACTTGGT < 41bp 1 0.0279303697681224 1 0.125934332609177 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044221 chrX:73044235 . . 0 7 hm5C_associated_SNPs_44313 0 0 1 1 0 unknown 1 0.500231645320484 1 0.999536709359031 hm5C_site_43206 DeepMRMD:1;iRNA_m5C:0.999536709359031 43207 chr11 46394404 46394404 1 + C T UCEC 46394413 + 46394393 46394433 41 GGTACTGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGG GGTACTGGCAATGACTTGGCCCGAACCCTCAACTGGGGTGG < 41bp 1 0.302945139328156 1 0.164279013872147 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394413 chr11:46394404 synonymous SNV . 0 12 hm5C_associated_SNPs_44314 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43207 DeepMRMD:1;iRNA_m5C:0.999536712157815 43208 chr11 46394404 46394404 1 + C T UCEC 46394414 + 46394394 46394434 41 GTACTGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGG GTACTGGCAATGACTTGGCCCGAACCCTCAACTGGGGTGGG < 41bp 1 0.116571966243764 1 0.0736207962036133 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394414 chr11:46394404 synonymous SNV . 0 11 hm5C_associated_SNPs_44315 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43208 DeepMRMD:1;iRNA_m5C:0.999536712157815 43209 chr11 46394404 46394404 1 + C T UCEC 46394418 + 46394398 46394438 41 TGGCAACGACTTGGCCCGAACCCTCAACTGGGGTGGGGTAA TGGCAATGACTTGGCCCGAACCCTCAACTGGGGTGGGGTAA < 41bp 1 0.0727507762187681 1 0.219025075435638 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394418 chr11:46394404 synonymous SNV . 0 7 hm5C_associated_SNPs_44316 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43209 DeepMRMD:1;iRNA_m5C:0.999536712157815 43210 chr11 57574442 57574442 1 + G A UCEC 57574432 + 57574412 57574452 41 AAACGATACAGTGGATTTCCCTAAAAGAACGAGTCCAGCTC AAACGATACAGTGGATTTCCCTAAAAGAACAAGTCCAGCTC < 41bp 1 0.699462574559217 1 0.520591735839844 experiment 0.601074850881566 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57574432 chr11:57574442 synonymous SNV . 0 31 hm5C_associated_SNPs_44317 0 0 1 0 2 Nucleus 1 0.500231643921093 0.958816528320312 0.999536712157815 hm5C_site_43210 DeepMRMD:0.958816528320312;iRNA_m5C:0.999536712157815 43211 chr17 16285400 16285400 1 + A G UCEC 16285385 + 16285365 16285405 41 GCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCC GCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAGCATCC < 41bp 1 0.288045845541878 1 0.122804522514343 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBB ENSG00000170315 CDS Human protein_coding chr17:16285385 chr17:16285400 nonsynonymous SNV 0.999 0 36 hm5C_associated_SNPs_44318 0 0 1 0 1 Ribosome 1 0.500231641027541 1 0.999536717944917 hm5C_site_43211 DeepMRMD:1;iRNA_m5C:0.999536717944917 43212 chr6 4935975 4935975 1 + G A UCEC 4935980 + 4935960 4936000 41 CTTGTTATCCACAAAGTCCTCAGAGAATAACTCACTAAATC CTTGTTATCCACAAAATCCTCAGAGAATAACTCACTAAATC < 41bp 1 0.644144627244019 1 0.809953927993774 experiment 0.711710745511962 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4935980 chr6:4935975 synonymous SNV . 0 16 hm5C_associated_SNPs_44320 0 0 1 0 1 Cytoplasm 1 0.500231643921092 0.380092144012452 0.999536712157815 hm5C_site_43212 DeepMRMD:0.380092144012452;iRNA_m5C:0.999536712157815 43213 chr19 46202144 46202144 1 + G A UCEC 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCAGC < 41bp 1 0.121111200109931 1 0.725505709648132 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202144 nonsynonymous SNV 0.985 2 39 hm5C_associated_SNPs_44321 0 0 0 0 2 chromatin 1 0.500231643921093 0.548988580703736 0.999536712157815 hm5C_site_43213 DeepMRMD:0.548988580703736;iRNA_m5C:0.999536712157815 43214 chr11 64056104 64056104 1 + C A UCEC 64056090 + 64056070 64056110 41 CCCAGAGCACCAGCCACATCCTCAATGGGCAGGTCTTTGCC CCCAGAGCACCAGCCACATCCTCAATGGGCAGGTATTTGCC < 41bp 1 0.615415990105939 1 0.95353889465332 experiment 0.769168019788122 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control GPR137 ENSG00000173264 CDS Human protein_coding chr11:64056090 chr11:64056104 synonymous SNV . 0 35 hm5C_associated_SNPs_44322 0 0 0 0 2 Cytosol 1 0.500231643921092 0.09292221069336 0.999536712157816 hm5C_site_43214 DeepMRMD:0.09292221069336;iRNA_m5C:0.999536712157816 43215 chr11 64032915 64032915 1 + G A UCEC 64032900 + 64032880 64032920 41 CATCAGCGGAAGGCAGTCACCCTCACCCGCCGCCTGCTGGA CATCAGCGGAAGGCAGTCACCCTCACCCGCCGCCTACTGGA < 41bp 1 0.199770625721294 1 0.0596483051776886 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64032900 chr11:64032915 synonymous SNV . 0 36 hm5C_associated_SNPs_44323 0 0 0 0 1 Ribosome 1 0.500231542771994 1 0.999536914456011 hm5C_site_43215 DeepMRMD:1;iRNA_m5C:0.999536914456011 43216 chr1 150923134 150923134 1 + A G UCEC 150923116 + 150923096 150923136 41 CTGTCTGTCTCGAGTCAGACCTATGAGGAATGAGCAGTACC CTGTCTGTCTCGAGTCAGACCTATGAGGAATGAGCAGTGCC < 41bp 1 0.226508162628771 1 0.207189798355103 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150923116 chr1:150923134 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_44324 0 0 1 0 0 Nucleus 1 0.500231644542235 1 0.99953671091553 hm5C_site_43216 DeepMRMD:1;iRNA_m5C:0.99953671091553 43217 chr17 37360877 37360877 1 + C T UCEC 37360862 + 37360842 37360882 41 CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCCAAGGA CAGGCCAAGAAGGAGGAGATCATCAAGACTTTATCTAAGGA < 41bp 1 0.45257178060324 1 0.183613955974579 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360862 chr17:37360877 synonymous SNV . 0 36 hm5C_associated_SNPs_44325 0 0 1 0 1 chromatin 1 0.500231643884016 1 0.999536712231968 hm5C_site_43217 DeepMRMD:1;iRNA_m5C:0.999536712231968 43218 chr3 195398107 195398107 1 + G A UCEC 195398099 + 195398079 195398119 41 AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG AAGGTTTATGGAGCGATACGCCCCCATCACGAAGGACCTGG < 41bp 1 0.147334500647706 1 0.0388888418674469 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195398099 chr3:195398107 . . 0 29 hm5C_associated_SNPs_44327 0 0 0 0 1 unknown 1 0.500231643799305 1 0.999536712401391 hm5C_site_43218 DeepMRMD:1;iRNA_m5C:0.999536712401391 43219 chr11 74329639 74329639 1 + G A UCEC 74329623 + 74329603 74329643 41 AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTT AGCTGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCATCTT < 41bp 1 0.563516152794366 1 0.0715704560279846 experiment 0.872967694411267 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329623 chr11:74329639 synonymous SNV . 0 37 hm5C_associated_SNPs_44328 0 0 0 0 1 Nucleus 1 0.500231644281699 1 0.999536711436602 hm5C_site_43219 DeepMRMD:1;iRNA_m5C:0.999536711436602 43220 chr11 74329639 74329639 1 + G A UCEC 74329626 + 74329606 74329646 41 TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCA TGCCGTCCCTAGAGCTCCTGCTGAATCCTCTTCATCTTCCA < 41bp 1 0.667886486514409 1 0.19574773311615 experiment 0.664227026971182 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329626 chr11:74329639 synonymous SNV . 0 34 hm5C_associated_SNPs_44329 0 0 0 0 1 Nucleus 1 0.500231640367845 1 0.99953671926431 hm5C_site_43220 DeepMRMD:1;iRNA_m5C:0.99953671926431 43221 chr11 74329639 74329639 1 + G A UCEC 74329633 + 74329613 74329653 41 CCTAGAGCTCCTGCTGAATCCTCTTCGTCTTCCAAAAAGTT CCTAGAGCTCCTGCTGAATCCTCTTCATCTTCCAAAAAGTT < 41bp 1 0.130075225459083 1 0.0784773826599121 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329633 chr11:74329639 synonymous SNV . 0 27 hm5C_associated_SNPs_44330 0 0 0 0 1 Nucleus 1 0.500231643814836 1 0.999536712370329 hm5C_site_43221 DeepMRMD:1;iRNA_m5C:0.999536712370329 43222 chr11 74329639 74329639 1 + G A UCEC 74329645 + 74329625 74329665 41 GCTGAATCCTCTTCGTCTTCCAAAAAGTTTGAGCAGTCACA GCTGAATCCTCTTCATCTTCCAAAAAGTTTGAGCAGTCACA < 41bp 1 0.441547783631221 1 0.744121789932251 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329645 chr11:74329639 synonymous SNV . 0 15 hm5C_associated_SNPs_44331 0 0 0 0 1 Nucleus 1 0.500230754763647 0.511756420135498 0.999538490472705 hm5C_site_43222 DeepMRMD:0.511756420135498;iRNA_m5C:0.999538490472705 43223 chr22 30416177 30416177 1 + C T UCEC 30416167 + 30416147 30416187 41 CCCTTTTGAGACCAGAGGACCAAACGTGGACAGTTCTACAG CCCTTTTGAGACCAGAGGACCAAACGTGGATAGTTCTACAG < 41bp 1 0.1109359792345 1 0.206788897514343 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30416167 chr22:30416177 synonymous SNV . 0 31 hm5C_associated_SNPs_44332 0 0 1 0 0 Ribosome 1 0.500231643918552 1 0.999536712162896 hm5C_site_43223 DeepMRMD:1;iRNA_m5C:0.999536712162896 43224 chr12 989997 989997 1 + G A UCEC 989989 + 989969 990009 41 ATTCTACAGTCCTATCCCCTCCCATGCCGACAGAAGTACTG ATTCTACAGTCCTATCCCCTCCCATGCCAACAGAAGTACTG < 41bp 1 0.115348864761566 1 0.116830974817276 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient WNK1 ENSG00000060237 CDS Human protein_coding chr12:989989 chr12:989997 synonymous SNV . 0 29 hm5C_associated_SNPs_44333 0 0 1 0 0 Ribosome 1 0.500231643950552 1 0.999536712098895 hm5C_site_43224 DeepMRMD:1;iRNA_m5C:0.999536712098895 43225 chr14 73725987 73725987 1 + C T UCEC 73725978 + 73725958 73725998 41 TTTTGCTTCTTCTTTCTAGACTCCAGAGGCCAGTGGTGGGC TTTTGCTTCTTCTTTCTAGACTCCAGAGGTCAGTGGTGGGC < 41bp 1 0.660159896480506 1 0.772560954093933 experiment 0.679680207038988 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control PAPLN ENSG00000100767 CDS Human protein_coding chr14:73725978 chr14:73725987 synonymous SNV . 0 30 hm5C_associated_SNPs_44334 0 0 1 0 1 chromatin 1 0.500231643921094 0.454878091812134 0.999536712157813 hm5C_site_43225 DeepMRMD:0.454878091812134;iRNA_m5C:0.999536712157813 43226 chr1 236711362 236711362 1 + A G UCEC 236711377 + 236711357 236711397 41 GGCGTACACAGCCTGGAGTACAAACACAGATTTAAAGAGCT GGCGTGCACAGCCTGGAGTACAAACACAGATTTAAAGAGCT < 41bp 1 0.0786064119588236 1 0.155280888080597 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236711377 chr1:236711362 synonymous SNV . 0 6 hm5C_associated_SNPs_44335 0 0 1 0 1 Cytosol 1 0.500231643921083 1 0.999536712157835 hm5C_site_43226 DeepMRMD:1;iRNA_m5C:0.999536712157835 43227 chr7 11076068 11076068 1 + G A UCEC 11076066 + 11076046 11076086 41 CAAGGATCAATGCCCGGCTTCAGCAGTATCGTGCCAAAGCA CAAGGATCAATGCCCGGCTTCAACAGTATCGTGCCAAAGCA < 41bp 1 0.600521160177377 1 0.0930892527103424 experiment 0.798957679645246 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHF14 ENSG00000106443 CDS Human protein_coding chr7:11076066 chr7:11076068 synonymous SNV . 0 23 hm5C_associated_SNPs_44336 0 0 1 0 1 Nucleus 1 0.500231643952731 1 0.999536712094537 hm5C_site_43227 DeepMRMD:1;iRNA_m5C:0.999536712094537 43228 chr8 11696003 11696003 1 + G A UCEC 11695990 + 11695970 11696010 41 AGAATCTTCCCAACTGTCAGCTGATTTCCCGAAGCCACTAC AGAATCTTCCCAACTGTCAGCTGATTTCCCGAAACCACTAC < 41bp 1 0.422818299765035 1 0.239761680364609 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11695990 chr8:11696003 nonsynonymous SNV 1.000 0 34 hm5C_associated_SNPs_44337 0 0 1 0 0 Cytosol 1 0.500231640300678 1 0.999536719398645 hm5C_site_43228 DeepMRMD:1;iRNA_m5C:0.999536719398645 43229 chr17 7463164 7463164 1 + G T UCEC 7463183 + 7463163 7463203 41 AGCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC ATCAGCACTCTGTCCTGCACCTGGTTCCCATTAACGCCACC < 41bp 1 0.418659865887247 1 0.230528771877289 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TNFSF12-TNFSF13;TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463183 chr17:7463164 nonsynonymous SNV 0.772 1 2 hm5C_associated_SNPs_44338 0 0 0 0 1 unknown 1 0.500231649340545 1 0.99953670131891 hm5C_site_43229 DeepMRMD:1;iRNA_m5C:0.99953670131891 43230 chr11 67017884 67017884 1 + C T UCEC 67017891 + 67017871 67017911 41 GAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACGCTAC GAAAGCCAAGATCTGGGGATCGTACCTCACTGTCACGCTAC < 41bp 1 0.11295928386415 1 0.188031762838364 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67017891 chr11:67017884 nonsynonymous SNV 1.000 2 14 hm5C_associated_SNPs_44339 0 0 1 0 0 Cytosol 1 0.500231643828763 1 0.999536712342473 hm5C_site_43230 DeepMRMD:1;iRNA_m5C:0.999536712342473 43231 chr19 1036136 1036136 1 + C A UCEC 1036125 + 1036105 1036145 41 TCCCGGCCCCTTTCCCTCACCCAGGCCAAGACTAAGGGGCT TCCCGGCCCCTTTCCCTCACCCAGGCCAAGAATAAGGGGCT < 41bp 1 0.302913782393049 1 0.675444364547729 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CNN2 ENSG00000064666 CDS Human protein_coding chr19:1036125 chr19:1036136 nonsynonymous SNV 0.964 2 32 hm5C_associated_SNPs_44340 0 0 1 0 2 Ribosome 1 0.500231643921092 0.649111270904542 0.999536712157815 hm5C_site_43231 DeepMRMD:0.649111270904542;iRNA_m5C:0.999536712157815 43232 chr15 75949305 75949305 1 + G A UCEC 75949304 + 75949284 75949324 41 TCTGCTCTGCCTATGCCAGGCGCCTTCGCCAAGGTGAAGGA TCTGCTCTGCCTATGCCAGGCACCTTCGCCAAGGTGAAGGA < 41bp 1 0.327132364275415 1 0.0870012044906616 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX33 ENSG00000173548 CDS Human protein_coding chr15:75949304 chr15:75949305 nonsynonymous SNV 0.960 1 22 hm5C_associated_SNPs_44341 0 0 1 0 1 membrane 1 0.500232072929525 1 0.99953585414095 hm5C_site_43232 DeepMRMD:1;iRNA_m5C:0.99953585414095 43233 chr1 109643194 109643194 1 + C A UCEC 109643189 + 109643169 109643209 41 AATTGATCAGATAGACGAGGCCGGGCTTGTCCCCGGCCACT AATTGATCAGATAGACGAGGCCGGGATTGTCCCCGGCCACT < 41bp 1 0.498885577053546 1 0.15234899520874 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643189 chr1:109643194 . . 0 26 hm5C_associated_SNPs_44342 0 0 1 1 0 unknown 1 0.500230646226336 1 0.999538707547327 hm5C_site_43233 DeepMRMD:1;iRNA_m5C:0.999538707547327 43234 chr1 109643194 109643194 1 + C A UCEC 109643200 + 109643180 109643220 41 TAGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGG TAGACGAGGCCGGGATTGTCCCCGGCCACTGATTATCGAGG < 41bp 1 0.534843978615166 1 0.513755857944489 experiment 0.930312042769669 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643200 chr1:109643194 . . 0 15 hm5C_associated_SNPs_44344 0 0 1 1 0 unknown 1 0.500231643409008 0.972488284111022 0.999536713181983 hm5C_site_43234 DeepMRMD:0.972488284111022;iRNA_m5C:0.999536713181983 43235 chr1 109643194 109643194 1 + C A UCEC 109643201 + 109643181 109643221 41 AGACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGC AGACGAGGCCGGGATTGTCCCCGGCCACTGATTATCGAGGC < 41bp 1 0.567225381410709 1 0.888897657394409 experiment 0.865549237178583 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643201 chr1:109643194 . . 0 14 hm5C_associated_SNPs_44345 0 0 1 1 0 unknown 1 0.500231643921092 0.222204685211182 0.999536712157815 hm5C_site_43235 DeepMRMD:0.222204685211182;iRNA_m5C:0.999536712157815 43236 chr1 109643194 109643194 1 + C A UCEC 109643202 + 109643182 109643222 41 GACGAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCG GACGAGGCCGGGATTGTCCCCGGCCACTGATTATCGAGGCG < 41bp 1 0.403690613349735 1 0.716338574886322 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|30526041;GSE122413;RNA-BisSeq;HEK293;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643202 chr1:109643194 . . 0 13 hm5C_associated_SNPs_44346 0 0 1 1 0 unknown 1 0.500231618936246 0.567322850227356 0.999536762127508 hm5C_site_43236 DeepMRMD:0.567322850227356;iRNA_m5C:0.999536762127508 43237 chr1 109643194 109643194 1 + C A UCEC 109643205 + 109643185 109643225 41 GAGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATT GAGGCCGGGATTGTCCCCGGCCACTGATTATCGAGGCGATT < 41bp 1 0.0682342619262087 1 0.0406433343887329 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643205 chr1:109643194 . . 0 10 hm5C_associated_SNPs_44347 0 0 1 1 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_43237 DeepMRMD:1;iRNA_m5C:0.999536712157815 43238 chr1 109643194 109643194 1 + C A UCEC 109643206 + 109643186 109643226 41 AGGCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATTC AGGCCGGGATTGTCCCCGGCCACTGATTATCGAGGCGATTC < 41bp 1 0.363244927580752 1 0.029891312122345 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643206 chr1:109643194 . . 0 9 hm5C_associated_SNPs_44348 0 0 1 1 0 unknown 1 0.500232134851243 1 0.999535730297514 hm5C_site_43238 DeepMRMD:1;iRNA_m5C:0.999535730297514 43239 chr1 109643194 109643194 1 + C A UCEC 109643208 + 109643188 109643228 41 GCCGGGCTTGTCCCCGGCCACTGATTATCGAGGCGATTCTG GCCGGGATTGTCCCCGGCCACTGATTATCGAGGCGATTCTG < 41bp 1 0.566551699856188 1 0.119059324264526 experiment 0.866896600287625 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643208 chr1:109643194 . . 0 7 hm5C_associated_SNPs_44349 0 0 1 1 0 unknown 1 0.500231751362289 1 0.999536497275422 hm5C_site_43239 DeepMRMD:1;iRNA_m5C:0.999536497275422 43240 chr7 98591316 98591316 1 + A G UCEC 98591325 + 98591305 98591345 41 CCCTGGAAGGCATCGTCGATCAGATGGTCTGGTTCAGAGAA CCCTGGAAGGCGTCGTCGATCAGATGGTCTGGTTCAGAGAA < 41bp 1 0.344410444214022 1 0.601672351360321 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRRAP ENSG00000196367 CDS Human protein_coding chr7:98591325 chr7:98591316 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_44350 0 0 1 0 1 Nucleus 1 0.500231643929369 0.796655297279358 0.999536712141263 hm5C_site_43240 DeepMRMD:0.796655297279358;iRNA_m5C:0.999536712141263 43241 chrX 128695215 128695215 1 + A G UCEC 128695224 + 128695204 128695244 41 TGTGAAGGAACAAGAATGGTCCATGGCTGTAGAGAGAGGTT TGTGAAGGAACGAGAATGGTCCATGGCTGTAGAGAGAGGTT < 41bp 1 0.102790662634893 1 0.0787133574485779 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control OCRL ENSG00000122126 CDS Human protein_coding chrX:128695224 chrX:128695215 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_44351 0 0 1 0 2 Cytosol 1 0.500223566054449 1 0.999552867891103 hm5C_site_43241 DeepMRMD:1;iRNA_m5C:0.999552867891103 43242 chr6 31929385 31929385 1 + C G UCEC 31929378 + 31929358 31929398 41 CAGAGCCTCCATCTCAGGAGCAGTGGGCCATCCCTGTGGAC CAGAGCCTCCATCTCAGGAGCAGTGGGGCATCCCTGTGGAC < 41bp 1 0.27002251362004 1 0.333199799060822 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SKIV2L ENSG00000204351 CDS Human protein_coding chr6:31929378 chr6:31929385 nonsynonymous SNV 0.810 4 28 hm5C_associated_SNPs_44352 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43242 DeepMRMD:1;iRNA_m5C:0.999536712157815 43243 chr3 127398879 127398879 1 + C T UCEC 127398863 + 127398843 127398883 41 GCCTATGATGTGCTGAGCGTCGCCGACATGTACCTGCTGCC GCCTATGATGTGCTGAGCGTCGCCGACATGTACCTGTTGCC < 41bp 1 0.60900444471215 1 0.81798779964447 experiment 0.7819911105757 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127398863 chr3:127398879 synonymous SNV . 0 37 hm5C_associated_SNPs_44353 0 0 0 0 1 exosome 1 0.500231633458071 0.36402440071106 0.999536733083857 hm5C_site_43243 DeepMRMD:0.36402440071106;iRNA_m5C:0.999536733083857 43244 chr19 49377571 49377571 1 + G T UCEC 49377573 + 49377553 49377593 41 GATGAGGAAGAAGATGAGGACAGTGACTCTGGATCAGATGA GATGAGGAAGAAGATGAGTACAGTGACTCTGGATCAGATGA < 41bp 1 0.348653950682976 1 0.187388271093369 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377573 chr19:49377571 nonsynonymous SNV 0.311 1 19 hm5C_associated_SNPs_44354 0 0 1 0 0 Cytosol 1 0.500231405658579 1 0.999537188682843 hm5C_site_43244 DeepMRMD:1;iRNA_m5C:0.999537188682843 43245 chr19 49377571 49377571 1 + G T UCEC 49377579 + 49377559 49377599 41 GAAGAAGATGAGGACAGTGACTCTGGATCAGATGAGGAAGA GAAGAAGATGAGTACAGTGACTCTGGATCAGATGAGGAAGA < 41bp 1 0.306510795254951 1 0.176839053630829 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377579 chr19:49377571 nonsynonymous SNV 0.311 1 13 hm5C_associated_SNPs_44355 0 0 1 0 0 Cytosol 1 0.500231640652766 1 0.999536718694468 hm5C_site_43245 DeepMRMD:1;iRNA_m5C:0.999536718694468 43246 chr19 49377571 49377571 1 + G T UCEC 49377587 + 49377567 49377607 41 TGAGGACAGTGACTCTGGATCAGATGAGGAAGAGGGAGAAG TGAGTACAGTGACTCTGGATCAGATGAGGAAGAGGGAGAAG < 41bp 1 0.433968211020848 1 0.346685737371445 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377587 chr19:49377571 nonsynonymous SNV 0.311 1 5 hm5C_associated_SNPs_44356 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43246 DeepMRMD:1;iRNA_m5C:0.999536712157815 43247 chr17 79425974 79425974 1 + G A UCEC 79425992 + 79425972 79426012 41 GCGCAGAGCAGAGCGCCGCCCTAGGTGAGCAGGGCCAGGAA GCACAGAGCAGAGCGCCGCCCTAGGTGAGCAGGGCCAGGAA < 41bp 1 0.548980077436075 1 0.843108773231506 experiment 0.902039845127851 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425992 chr17:79425974 nonsynonymous SNV 0.003 0 3 hm5C_associated_SNPs_44357 0 0 0 0 1 chromatin 1 0.500231643921092 0.313782453536988 0.999536712157815 hm5C_site_43247 DeepMRMD:0.313782453536988;iRNA_m5C:0.999536712157815 43248 chr8 145139705 145139705 1 + G A UCEC 145139712 + 145139692 145139732 41 TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCT TACTTGCTCCCCGACCTCTCCCGCTTCGTCTCCATCGGCCT < 41bp 1 0.213578186766444 1 0.029585212469101 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139712 chr8:145139705 nonsynonymous SNV 0.801 1 14 hm5C_associated_SNPs_44358 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_43248 DeepMRMD:1;iRNA_m5C:0.999536712157815 43249 chr18 13029797 13029797 1 + T A UCEC 13029800 + 13029780 13029820 41 TAAAACAGGGGGCAGAGTGTCCTCACCAAAATAAGACAGTT TAAAACAGGGGGCAGAGAGTCCTCACCAAAATAAGACAGTT < 41bp 1 0.153317724123682 1 0.200478851795197 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13029800 chr18:13029797 nonsynonymous SNV 0.003 0 18 hm5C_associated_SNPs_44359 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43249 DeepMRMD:1;iRNA_m5C:0.999536712157815 43250 chr3 49050659 49050659 1 + C G UCEC 49050657 + 49050637 49050677 41 TGGGCCCAGTGTCTACCCTGCCCTCTCTGCACGGGAAGCAG TGGGCCCAGTGTCTACCCTGCCGTCTCTGCACGGGAAGCAG < 41bp 1 0.0441503979343143 1 0.063403308391571 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WDR6 ENSG00000178252 CDS Human protein_coding chr3:49050657 chr3:49050659 synonymous SNV . 0 23 hm5C_associated_SNPs_44360 0 0 1 0 0 Nucleus 1 0.500231644099507 1 0.999536711800987 hm5C_site_43250 DeepMRMD:1;iRNA_m5C:0.999536711800987 43251 chr19 36229292 36229292 1 + C T UCEC 36229279 + 36229259 36229299 41 TCATCAACCACTCCTGTGAGCCCAACTGCTTCTCTCGGGTC TCATCAACCACTCCTGTGAGCCCAACTGCTTCTTTCGGGTC < 41bp 1 0.100947570040433 1 0.197644978761673 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36229279 chr19:36229292 nonsynonymous SNV 0.986 4 34 hm5C_associated_SNPs_44361 0 0 1 0 0 chromatin 1 0.500231617394698 1 0.999536765210604 hm5C_site_43251 DeepMRMD:1;iRNA_m5C:0.999536765210604 43252 chr16 67662338 67662338 1 + C A UCEC 67662319 + 67662299 67662339 41 CACCCACACCGGGGAGAAGCCTTACGCCTGCAGCCACTGCG CACCCACACCGGGGAGAAGCCTTACGCCTGCAGCCACTGAG < 41bp 1 0.287198198325357 1 0.128298074007034 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CTCF ENSG00000102974 CDS Human protein_coding chr16:67662319 chr16:67662338 stopgain 1.000 1 40 hm5C_associated_SNPs_44362 0 0 1 0 0 Nucleus 1 0.500231643921099 1 0.999536712157802 hm5C_site_43252 DeepMRMD:1;iRNA_m5C:0.999536712157802 43253 chr6 107956334 107956334 1 + A G UCEC 107956346 + 107956326 107956366 41 CCTGAGGAACCGGCGGTGAGCGAGCTAGAGTCGGTCAAGGA CCTGAGGAGCCGGCGGTGAGCGAGCTAGAGTCGGTCAAGGA < 41bp 1 0.595641183471532 1 0.563271164894104 experiment 0.808717633056937 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SOBP ENSG00000112320 CDS Human protein_coding chr6:107956346 chr6:107956334 synonymous SNV . 0 9 hm5C_associated_SNPs_44363 0 0 0 0 0 cytosol 1 0.500231643890175 0.873457670211792 0.999536712219651 hm5C_site_43253 DeepMRMD:0.873457670211792;iRNA_m5C:0.999536712219651 43254 chr6 158497778 158497778 1 + C T UCEC 158497758 + 158497738 158497778 41 AAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTGC AAGCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTGT < 41bp 1 0.115932353862707 1 0.160427570343018 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497758 chr6:158497778 synonymous SNV . 0 41 hm5C_associated_SNPs_44364 0 0 1 0 1 Cytosol 1 0.500231650318692 1 0.999536699362617 hm5C_site_43254 DeepMRMD:1;iRNA_m5C:0.999536699362617 43255 chr7 35943889 35943889 1 + G T UCEC 35943897 + 35943877 35943917 41 AACAAGAAGAAAGGGAAGATCTTTTAAACTCTCTATTGACC AACAAGAAGAAATGGAAGATCTTTTAAACTCTCTATTGACC < 41bp 1 0.0476860223018829 1 0.0601078569889069 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35943897 chr7:35943889 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_44365 0 0 1 0 1 chromatin 1 0.500227920739036 1 0.999544158521928 hm5C_site_43255 DeepMRMD:1;iRNA_m5C:0.999544158521928 43256 chr7 44733446 44733446 1 + G A UCEC 44733426 + 44733406 44733446 41 GCTACATGTTCCTTGCAGATCGGCTTCACCACCGACCCTCG GCTACATGTTCCTTGCAGATCGGCTTCACCACCGACCCTCA < 41bp 1 0.623324459468579 1 0.253660380840302 experiment 0.753351081062842 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44733426 chr7:44733446 nonsynonymous SNV 0.991 5 41 hm5C_associated_SNPs_44366 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43256 DeepMRMD:1;iRNA_m5C:0.999536712157815 43257 chr7 44733446 44733446 1 + G A UCEC 44733465 + 44733445 44733485 41 CGGATGGCCCGCTCCTCCCCCTACCCCACTGACGTGGCCCG CAGATGGCCCGCTCCTCCCCCTACCCCACTGACGTGGCCCG < 41bp 1 0.148853591924141 1 0.269967019557953 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control OGDH ENSG00000105953 CDS Human protein_coding chr7:44733465 chr7:44733446 nonsynonymous SNV 0.991 5 2 hm5C_associated_SNPs_44367 0 0 0 0 1 Nucleus 1 0.500232915751267 1 0.999534168497467 hm5C_site_43257 DeepMRMD:1;iRNA_m5C:0.999534168497467 43258 chr19 38572443 38572443 1 + C T UCEC 38572456 + 38572436 38572476 41 GGGCGTGCGCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGG GGGCGTGTGCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGG < 41bp 1 0.0692090634515965 1 0.375896245241165 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572456 chr19:38572443 nonsynonymous SNV 0.017 5 8 hm5C_associated_SNPs_44368 0 0 1 0 0 Ribosome 1 0.500231635946138 1 0.999536728107725 hm5C_site_43258 DeepMRMD:1;iRNA_m5C:0.999536728107725 43259 chr19 38572443 38572443 1 + C T UCEC 38572457 + 38572437 38572477 41 GGCGTGCGCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGA GGCGTGTGCGCAAGGGTGGCCGACTGGCCGCCCAAGCGGGA < 41bp 1 0.176753203596613 1 0.280963450670242 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572457 chr19:38572443 nonsynonymous SNV 0.017 5 7 hm5C_associated_SNPs_44369 0 0 1 0 0 Ribosome 1 0.500231655300807 1 0.999536689398387 hm5C_site_43259 DeepMRMD:1;iRNA_m5C:0.999536689398387 43260 chr2 73471150 73471150 1 + C T UCEC 73471157 + 73471137 73471177 41 ATCAAAGAGATTGCTGTGACCGTGAAGAAGGCAGATAAAGT ATCAAAGAGATTGTTGTGACCGTGAAGAAGGCAGATAAAGT < 41bp 1 0.445276970047143 1 0.670185685157776 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CCT7 ENSG00000135624 CDS Human protein_coding chr2:73471157 chr2:73471150 nonsynonymous SNV 0.997 1 14 hm5C_associated_SNPs_44370 0 0 1 0 1 Cytosol 1 0.500231542436527 0.659628629684448 0.999536915126947 hm5C_site_43260 DeepMRMD:0.659628629684448;iRNA_m5C:0.999536915126947 43261 chr2 73471150 73471150 1 + C T UCEC 73471168 + 73471148 73471188 41 TGCTGTGACCGTGAAGAAGGCAGATAAAGTGTAAGTCTGTA TGTTGTGACCGTGAAGAAGGCAGATAAAGTGTAAGTCTGTA < 41bp 1 0.294429539714947 1 0.466152638196945 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CCT7 ENSG00000135624 CDS Human protein_coding chr2:73471168 chr2:73471150 nonsynonymous SNV 0.997 1 3 hm5C_associated_SNPs_44371 0 0 1 0 1 Cytosol 1 0.500231643921185 1 0.999536712157631 hm5C_site_43261 DeepMRMD:1;iRNA_m5C:0.999536712157631 43262 chrX 73046503 73046503 1 + C A UCEC 73046490 - 73046470 73046510 41 GCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAAC GCTTGAATACCTGGGGAAATCCCAAGATGAGAACCCTAAAC < 41bp 1 0.567996884311478 1 0.612966418266296 experiment 0.864006231377044 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73046490 chrX:73046503 . . 0 8 hm5C_associated_SNPs_44372 0 0 1 4 0 unknown 1 0.500231643921092 0.774067163467408 0.999536712157815 hm5C_site_43262 DeepMRMD:0.774067163467408;iRNA_m5C:0.999536712157815 43263 chr5 176722010 176722010 1 + T G UCEC 176722024 + 176722004 176722044 41 GGCCTTTTTATATGAGCCAACAACTCAGGCCTCAGGAAGAG GGCCTTGTTATATGAGCCAACAACTCAGGCCTCAGGAAGAG < 41bp 1 0.148118288311877 1 0.0864331722259521 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NSD1 ENSG00000165671 CDS Human protein_coding chr5:176722024 chr5:176722010 nonsynonymous SNV 0.986 2 7 hm5C_associated_SNPs_44373 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43263 DeepMRMD:1;iRNA_m5C:0.999536712157815 43264 chr6 31525852 31525852 1 + C T UCEC 31525833 + 31525813 31525853 41 GAAACCCAGGAACCTGAGTCCTTCTCAGCCTGGTCAGATCG GAAACCCAGGAACCTGAGTCCTTCTCAGCCTGGTCAGATTG < 41bp 1 0.277500091938199 1 0.1507368683815 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NFKBIL1 ENSG00000204498 CDS Human protein_coding chr6:31525833 chr6:31525852 nonsynonymous SNV 0.998 3 40 hm5C_associated_SNPs_44374 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43264 DeepMRMD:1;iRNA_m5C:0.999536712157815 43265 chrX 73044584 73044584 1 + C T UCEC 73044568 - 73044548 73044588 41 TGAAGTAATAGATGTGAGATCCAGACCGAAAGTCACTTAAT TGAAATAATAGATGTGAGATCCAGACCGAAAGTCACTTAAT < 41bp 1 0.257869839525163 1 0.717103004455566 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044568 chrX:73044584 . . 0 5 hm5C_associated_SNPs_44375 0 0 1 0 0 unknown 1 0.500231643921092 0.565793991088868 0.999536712157816 hm5C_site_43265 DeepMRMD:0.565793991088868;iRNA_m5C:0.999536712157816 43266 chr7 150931171 150931171 1 + G T UCEC 150931172 + 150931152 150931192 41 GGGCTGTCTCTGGGGTGCAGCCTGAGCCTCCTGCGGGTTTC GGGCTGTCTCTGGGGTGCATCCTGAGCCTCCTGCGGGTTTC < 41bp 1 0.505115984741904 1 0.140098392963409 experiment 0.989768030516191 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CHPF2;CHPF2 ENSG00000033100;ENSG00000033100 exonic;splicing Human other chr7:150931172 chr7:150931171 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_44376 0 0 1 0 0 unknown 1 0.500231596274989 1 0.999536807450022 hm5C_site_43266 DeepMRMD:1;iRNA_m5C:0.999536807450022 43267 chr7 150931171 150931171 1 + G T UCEC 150931173 + 150931153 150931193 41 GGCTGTCTCTGGGGTGCAGCCTGAGCCTCCTGCGGGTTTCC GGCTGTCTCTGGGGTGCATCCTGAGCCTCCTGCGGGTTTCC < 41bp 1 0.631024647441109 1 0.261405825614929 experiment 0.737950705117782 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CHPF2;CHPF2 ENSG00000033100;ENSG00000033100 exonic;splicing Human other chr7:150931173 chr7:150931171 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_44377 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_43267 DeepMRMD:1;iRNA_m5C:0.999536712157815 43268 chr2 182786894 182786894 1 + G A UCEC 182786886 + 182786866 182786906 41 AGTGGGCAAATCCAAAACCCCATTAGTGGCAAGGAAGAAAG AGTGGGCAAATCCAAAACCCCATTAGTGACAAGGAAGAAAG < 41bp 1 0.312709237257528 1 0.0684865117073059 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182786886 chr2:182786894 nonsynonymous SNV 0.032 0 29 hm5C_associated_SNPs_44378 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43268 DeepMRMD:1;iRNA_m5C:0.999536712157815 43269 chr7 70252222 70252222 1 + A C UCEC 70252228 + 70252208 70252248 41 GTTCGGCCACAAGGATGGCCCCAGTGTGCAGAACTTTAGCA GTTCGGCCACAAGGCTGGCCCCAGTGTGCAGAACTTTAGCA < 41bp 1 0.158460638011605 1 0.0669603049755096 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70252228 chr7:70252222 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_44379 0 0 1 0 1 Nucleus 1 0.500231643924349 1 0.999536712151301 hm5C_site_43269 DeepMRMD:1;iRNA_m5C:0.999536712151301 43270 chr19 17273853 17273853 1 + G T UCEC 17273851 + 17273831 17273871 41 TTTGAAGACTTCGAGAGGAACAGCTTTGAGCAGTTCTGCAT TTTGAAGACTTCGAGAGGAACATCTTTGAGCAGTTCTGCAT < 41bp 1 0.114606058589553 1 0.0505989491939545 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17273851 chr19:17273853 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_44380 0 0 1 0 2 Nucleus 1 0.500231643921213 1 0.999536712157574 hm5C_site_43270 DeepMRMD:1;iRNA_m5C:0.999536712157574 43271 chr12 51449982 51449982 1 + T G UCEC 51449969 + 51449949 51449989 41 CAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAAC CAATACATGATATCTTGGCTCTGAGAGAGTGTTGCTCTAAC < 41bp 1 0.573247117075848 1 0.357956230640411 experiment 0.853505765848305 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449969 chr12:51449982 nonsynonymous SNV 0.977 4 34 hm5C_associated_SNPs_44381 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_43271 DeepMRMD:1;iRNA_m5C:0.999536712157816 43272 chr2 54845322 54845322 1 + A G UCEC 54845324 + 54845304 54845344 41 GCCTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGG GCCTCACTAAACTGTTGGGCCCCGAAGGTAGGGACTCAAGG < 41bp 1 0.230749053386061 1 0.143860727548599 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845324 chr2:54845322 nonsynonymous SNV 0.964 5 19 hm5C_associated_SNPs_44382 0 0 1 0 1 Nucleus 1 0.5002315565654 1 0.9995368868692 hm5C_site_43272 DeepMRMD:1;iRNA_m5C:0.9995368868692 43273 chr2 54845322 54845322 1 + A G UCEC 54845325 + 54845305 54845345 41 CCTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGGG CCTCACTAAACTGTTGGGCCCCGAAGGTAGGGACTCAAGGG < 41bp 1 0.202771627667114 1 0.246159434318542 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845325 chr2:54845322 nonsynonymous SNV 0.964 5 18 hm5C_associated_SNPs_44383 0 0 1 0 1 Nucleus 1 0.500231643907998 1 0.999536712184004 hm5C_site_43273 DeepMRMD:1;iRNA_m5C:0.999536712184004 43274 chr2 54845322 54845322 1 + A G UCEC 54845326 + 54845306 54845346 41 CTCACTAAACTGTTGGACCCCGAAGGTAGGGACTCAAGGGA CTCACTAAACTGTTGGGCCCCGAAGGTAGGGACTCAAGGGA < 41bp 1 0.278130121455894 1 0.530791580677032 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54845326 chr2:54845322 nonsynonymous SNV 0.964 5 17 hm5C_associated_SNPs_44384 0 0 1 0 1 Nucleus 1 0.500231642695926 0.938416838645936 0.999536714608148 hm5C_site_43274 DeepMRMD:0.938416838645936;iRNA_m5C:0.999536714608148 43275 chr15 52338937 52338937 1 + G A UCEC 52338932 + 52338912 52338952 41 TCCCAGTGGAAGCCAATTAACAGACGATGTGGGCTCTCTTA TCCCAGTGGAAGCCAATTAACAGACAATGTGGGCTCTCTTA < 41bp 1 0.683389718595491 1 0.680657148361206 experiment 0.633220562809018 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52338932 chr15:52338937 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_44385 0 0 1 0 0 Ribosome 1 0.500231643922448 0.638685703277588 0.999536712155104 hm5C_site_43275 DeepMRMD:0.638685703277588;iRNA_m5C:0.999536712155104 43276 chr12 57919787 57919787 1 + C T UCEC 57919788 + 57919768 57919808 41 CACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAG CACTTTACAGGGCCGAAGGTCCCGTGCCCAGGCACCCTCAG < 41bp 1 0.300520765050378 1 0.24921789765358 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919788 chr12:57919787 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_44386 0 0 1 0 0 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_43276 DeepMRMD:1;iRNA_m5C:0.999536712157815 43277 chr12 57919787 57919787 1 + C T UCEC 57919789 + 57919769 57919809 41 ACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGC ACTTTACAGGGCCGAAGGTCCCGTGCCCAGGCACCCTCAGC < 41bp 1 0.183251872937653 1 0.233287781476974 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919789 chr12:57919787 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_44387 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43277 DeepMRMD:1;iRNA_m5C:0.999536712157815 43278 chr12 57919787 57919787 1 + C T UCEC 57919790 + 57919770 57919810 41 CTTTACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCT CTTTACAGGGCCGAAGGTCCCGTGCCCAGGCACCCTCAGCT < 41bp 1 0.331383967018039 1 0.41313898563385 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919790 chr12:57919787 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_44388 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43278 DeepMRMD:1;iRNA_m5C:0.999536712157815 43279 chr12 57919787 57919787 1 + C T UCEC 57919794 + 57919774 57919814 41 ACAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCC ACAGGGCCGAAGGTCCCGTGCCCAGGCACCCTCAGCTTCCC < 41bp 1 0.261449288524701 1 0.13982030749321 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919794 chr12:57919787 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_44389 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43279 DeepMRMD:1;iRNA_m5C:0.999536712157815 43280 chr12 57919787 57919787 1 + C T UCEC 57919795 + 57919775 57919815 41 CAGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCA CAGGGCCGAAGGTCCCGTGCCCAGGCACCCTCAGCTTCCCA < 41bp 1 0.241746421212578 1 0.251450896263123 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919795 chr12:57919787 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_44390 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43280 DeepMRMD:1;iRNA_m5C:0.999536712157815 43281 chr12 57919787 57919787 1 + C T UCEC 57919796 + 57919776 57919816 41 AGGGCCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCAC AGGGCCGAAGGTCCCGTGCCCAGGCACCCTCAGCTTCCCAC < 41bp 1 0.509082580756917 1 0.833602070808411 experiment 0.981834838486166 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919796 chr12:57919787 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_44391 0 0 1 0 0 chromatin 1 0.500231643921092 0.332795858383178 0.999536712157815 hm5C_site_43281 DeepMRMD:0.332795858383178;iRNA_m5C:0.999536712157815 43282 chr12 57919787 57919787 1 + C T UCEC 57919800 + 57919780 57919820 41 CCGAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCT CCGAAGGTCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCT < 41bp 1 0.254187106229575 1 0.0346833467483521 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919800 chr12:57919787 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_44392 0 0 1 0 0 chromatin 1 0.50023164390683 1 0.999536712186341 hm5C_site_43282 DeepMRMD:1;iRNA_m5C:0.999536712186341 43283 chr12 57919787 57919787 1 + C T UCEC 57919802 + 57919782 57919822 41 GAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCA GAAGGTCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCA < 41bp 1 0.0247321221004842 1 0.0139928758144379 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919802 chr12:57919787 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_44393 0 0 1 0 0 chromatin 1 0.500231643939637 1 0.999536712120725 hm5C_site_43283 DeepMRMD:1;iRNA_m5C:0.999536712120725 43284 chr12 57919787 57919787 1 + C T UCEC 57919803 + 57919783 57919823 41 AAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCAT AAGGTCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCAT < 41bp 1 0.129730750167768 1 0.0355278551578522 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919803 chr12:57919787 nonsynonymous SNV 1.000 3 5 hm5C_associated_SNPs_44394 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43284 DeepMRMD:1;iRNA_m5C:0.999536712157815 43285 chr12 57919787 57919787 1 + C T UCEC 57919804 + 57919784 57919824 41 AGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATC AGGTCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATC < 41bp 1 0.490915393020603 1 0.136484891176224 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919804 chr12:57919787 nonsynonymous SNV 1.000 3 4 hm5C_associated_SNPs_44395 0 0 1 0 0 chromatin 1 0.500231643921835 1 0.99953671215633 hm5C_site_43285 DeepMRMD:1;iRNA_m5C:0.99953671215633 43286 chr12 57919787 57919787 1 + C T UCEC 57919806 + 57919786 57919826 41 GCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATCAC GTCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATCAC < 41bp 1 0.62296325101649 1 0.67266833782196 experiment 0.754073497967021 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919806 chr12:57919787 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_44396 0 0 1 0 0 chromatin 1 0.500231643014694 0.65466332435608 0.999536713970611 hm5C_site_43286 DeepMRMD:0.65466332435608;iRNA_m5C:0.999536713970611 43287 chr11 35201888 35201888 1 + A G UCEC 35201875 + 35201855 35201895 41 CGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGG CGGATCCACCCCAACTCCATCTGTGCAGCAAACGACACAGG < 41bp 1 0.375431655782876 1 0.346743702888489 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201875 chr11:35201888 nonsynonymous SNV 0.388 0 34 hm5C_associated_SNPs_44397 0 0 1 0 2 Nucleus 1 0.500231643921019 1 0.999536712157963 hm5C_site_43287 DeepMRMD:1;iRNA_m5C:0.999536712157963 43288 chr11 35201888 35201888 1 + A G UCEC 35201902 + 35201882 35201922 41 GCAAACAACACAGGGGTGTACATCCTCACATCCAACACCTC GCAAACGACACAGGGGTGTACATCCTCACATCCAACACCTC < 41bp 1 0.154994451186717 1 0.147462874650955 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201902 chr11:35201888 nonsynonymous SNV 0.388 0 7 hm5C_associated_SNPs_44398 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43288 DeepMRMD:1;iRNA_m5C:0.999536712157815 43289 chrX 73042709 73042709 1 + C A UCEC 73042691 - 73042671 73042711 41 TAGCTGTGATATGTTCGATACTAAGGAAAAACTAAACAGAT TATCTGTGATATGTTCGATACTAAGGAAAAACTAAACAGAT < 41bp 1 0.185351600567915 1 0.432088136672974 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042691 chrX:73042709 . . 0 3 hm5C_associated_SNPs_44399 0 0 1 0 0 unknown 1 0.500231645152592 1 0.999536709694816 hm5C_site_43289 DeepMRMD:1;iRNA_m5C:0.999536709694816 43290 chr18 3457605 3457605 1 + C A UCEC 3457613 + 3457593 3457633 41 TAAGCCGTCATCCCCGGGATCAGTTTTGGCTCGTCCATCAG TAAGCCGTCATCACCGGGATCAGTTTTGGCTCGTCCATCAG < 41bp 1 0.286140957233028 1 0.065497875213623 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457613 chr18:3457605 synonymous SNV . 0 13 hm5C_associated_SNPs_44400 0 0 1 0 0 Cytosol 1 0.500231644478658 1 0.999536711042684 hm5C_site_43290 DeepMRMD:1;iRNA_m5C:0.999536711042684 43291 chr18 3457605 3457605 1 + C A UCEC 3457622 + 3457602 3457642 41 ATCCCCGGGATCAGTTTTGGCTCGTCCATCAGTGATCTGCC ATCACCGGGATCAGTTTTGGCTCGTCCATCAGTGATCTGCC < 41bp 1 0.618888862666207 1 0.281286299228668 experiment 0.762222274667586 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457622 chr18:3457605 synonymous SNV . 0 4 hm5C_associated_SNPs_44401 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43291 DeepMRMD:1;iRNA_m5C:0.999536712157815 43292 chr5 37697813 37697813 1 + C T UCEC 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACTCGGGCACAGACACTTCTTGTGTGACTTTTTC < 41bp 1 0.335002559495842 1 0.0826710760593414 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697813 synonymous SNV . 0 30 hm5C_associated_SNPs_44402 0 0 0 2 2 Nucleus 1 0.500231630766153 1 0.999536738467694 hm5C_site_43292 DeepMRMD:1;iRNA_m5C:0.999536738467694 43293 chr5 37697813 37697813 1 + C T UCEC 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACTCGGGCACAGACACTTCTTGTGTGACTTTTTCCT < 41bp 1 0.245449835794637 1 0.149654179811478 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697813 synonymous SNV . 0 28 hm5C_associated_SNPs_44403 0 0 0 2 2 Nucleus 1 0.500231622656679 1 0.999536754686642 hm5C_site_43293 DeepMRMD:1;iRNA_m5C:0.999536754686642 43294 chr12 53776171 53776171 1 + A G UCEC 53776180 + 53776160 53776200 41 TGGTGGGCAGTATGTTGTGGCTGCCGCTCCCAACTTACAGA TGGTGGGCAGTGTGTTGTGGCTGCCGCTCCCAACTTACAGA < 41bp 1 0.301756700720977 1 0.0289565622806549 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SP1 ENSG00000185591 CDS Human protein_coding chr12:53776180 chr12:53776171 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_44405 0 0 1 0 0 Nucleus 1 0.500231650434364 1 0.999536699131272 hm5C_site_43294 DeepMRMD:1;iRNA_m5C:0.999536699131272 43295 chrX 123195667 123195667 1 + T C UCEC 123195669 + 123195649 123195689 41 GATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAAT GATTGAAATAATGCTTTGCACCATTAGACAAGCGGCTGAAT < 41bp 1 0.0802592264633086 1 0.0301941633224487 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123195669 chrX:123195667 synonymous SNV . 0 19 hm5C_associated_SNPs_44406 0 0 1 0 1 Nucleus 1 0.500231659816247 1 0.999536680367507 hm5C_site_43295 DeepMRMD:1;iRNA_m5C:0.999536680367507 43296 chrX 123195667 123195667 1 + T C UCEC 123195670 + 123195650 123195690 41 ATTGAAATAATGCTTTGTACCATTAGACAAGCGGCTGAATG ATTGAAATAATGCTTTGCACCATTAGACAAGCGGCTGAATG < 41bp 1 0.272846565348931 1 0.0646955370903015 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123195670 chrX:123195667 synonymous SNV . 0 18 hm5C_associated_SNPs_44407 0 0 1 0 1 Nucleus 1 0.500231386038709 1 0.999537227922582 hm5C_site_43296 DeepMRMD:1;iRNA_m5C:0.999537227922582 43297 chr5 162869386 162869386 1 + G T UCEC 162869395 + 162869375 162869415 41 TACAGATAAATGGCAGAGATCTGACCTTCTGGCAAGAGCTT TACAGATAAATTGCAGAGATCTGACCTTCTGGCAAGAGCTT < 41bp 1 0.160488806406362 1 0.0488498210906982 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCNG1 ENSG00000113328 CDS Human protein_coding chr5:162869395 chr5:162869386 nonsynonymous SNV 1.000 1 12 hm5C_associated_SNPs_44408 0 0 1 1 1 Cytosol 1 0.500231645124392 1 0.999536709751216 hm5C_site_43297 DeepMRMD:1;iRNA_m5C:0.999536709751216 43298 chr19 33465002 33465002 1 + A G UCEC 33465022 + 33465002 33465042 41 ACCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT GCCCGGATGAGTGAACAATACTTCCCAGCCCTACAGAAGTT < 41bp 1 0.169404125873596 1 0.139242351055145 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465022 chr19:33465002 nonsynonymous SNV 0.558 3 1 hm5C_associated_SNPs_44409 0 0 1 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43298 DeepMRMD:1;iRNA_m5C:0.999536712157815 43299 chr19 41711899 41711899 1 + C A UCEC 41711910 + 41711890 41711930 41 TCCATCCTGCATGACCCCAACATCTTCAAGCACCCAGAAGA TCCATCCTGAATGACCCCAACATCTTCAAGCACCCAGAAGA < 41bp 1 0.0900786372301116 1 0.0617958605289459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41711910 chr19:41711899 stopgain 0.003 1 10 hm5C_associated_SNPs_44410 0 0 0 0 1 Ribosome 1 0.500231643925321 1 0.999536712149357 hm5C_site_43299 DeepMRMD:1;iRNA_m5C:0.999536712149357 43300 chr1 38484934 38484934 1 + T C UCEC 38484930 + 38484910 38484950 41 TGTCTTGAATTTTAGTTGAACAGTTTGATGTCGCAACTCAC TGTCTTGAATTTTAGTTGAACAGTCTGATGTCGCAACTCAC < 41bp 1 0.157707403270023 1 0.0698352754116058 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP11 ENSG00000183520 CDS Human protein_coding chr1:38484930 chr1:38484934 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_44411 0 0 1 0 1 Ribosome 1 0.500231536301576 1 0.999536927396848 hm5C_site_43300 DeepMRMD:1;iRNA_m5C:0.999536927396848 43301 chr12 27835633 27835633 1 + T G UCEC 27835622 + 27835602 27835642 41 GGGTTGATGGTCGAATGCTACATTACATGACTGTTGTAAGT GGGTTGATGGTCGAATGCTACATTACATGACGGTTGTAAGT < 41bp 1 0.203110727718829 1 0.149397045373917 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27835622 chr12:27835633 synonymous SNV . 0 32 hm5C_associated_SNPs_44413 0 0 0 0 2 Nucleus 1 0.500250055800541 1 0.999499888398919 hm5C_site_43301 DeepMRMD:1;iRNA_m5C:0.999499888398919 43302 chr16 82891968 82891968 1 + T C UCEC 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGCGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA < 41bp 1 0.579049297316717 1 0.825625777244568 experiment 0.841901405366567 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891968 nonsynonymous SNV 0.998 2 6 hm5C_associated_SNPs_44414 0 0 0 0 1 Nucleus 1 0.500231041427846 0.348748445510864 0.999537917144308 hm5C_site_43302 DeepMRMD:0.348748445510864;iRNA_m5C:0.999537917144308 43303 chr22 39125528 39125528 1 + C T UCEC 39125541 + 39125521 39125561 41 ATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGA ATGCAGTTGACGAAAAAGGGCCCCCTGACGAAACGAGACGA < 41bp 1 0.0556682857353799 1 0.108709216117859 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125541 chr22:39125528 nonsynonymous SNV 0.971 1 8 hm5C_associated_SNPs_44415 0 0 1 0 1 Ribosome 1 0.500231643922391 1 0.999536712155218 hm5C_site_43303 DeepMRMD:1;iRNA_m5C:0.999536712155218 43304 chr22 39125528 39125528 1 + C T UCEC 39125542 + 39125522 39125562 41 TGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG TGCAGTTGACGAAAAAGGGCCCCCTGACGAAACGAGACGAG < 41bp 1 0.0516013787768919 1 0.185302495956421 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125542 chr22:39125528 nonsynonymous SNV 0.971 1 7 hm5C_associated_SNPs_44416 0 0 1 0 1 Ribosome 1 0.500231645778805 1 0.999536708442391 hm5C_site_43304 DeepMRMD:1;iRNA_m5C:0.999536708442391 43305 chr22 39125528 39125528 1 + C T UCEC 39125543 + 39125523 39125563 41 GCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG GCAGTTGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGG < 41bp 1 0.0291291298396811 1 0.193480223417282 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125543 chr22:39125528 nonsynonymous SNV 0.971 1 6 hm5C_associated_SNPs_44417 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43305 DeepMRMD:1;iRNA_m5C:0.999536712157815 43306 chr22 39125528 39125528 1 + C T UCEC 39125544 + 39125524 39125564 41 CAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG CAGTTGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGG < 41bp 1 0.080893638117338 1 0.174072861671448 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125544 chr22:39125528 nonsynonymous SNV 0.971 1 5 hm5C_associated_SNPs_44418 0 0 1 0 1 Ribosome 1 0.500231643922722 1 0.999536712154556 hm5C_site_43306 DeepMRMD:1;iRNA_m5C:0.999536712154556 43307 chr22 39125528 39125528 1 + C T UCEC 39125545 + 39125525 39125565 41 AGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG AGTTGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGG < 41bp 1 0.16245738275498 1 0.377568662166595 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125545 chr22:39125528 nonsynonymous SNV 0.971 1 4 hm5C_associated_SNPs_44419 0 0 1 0 1 Ribosome 1 0.500231643920672 1 0.999536712158657 hm5C_site_43307 DeepMRMD:1;iRNA_m5C:0.999536712158657 43308 chr16 22237232 22237232 1 + G T UCEC 22237252 + 22237232 22237272 41 GCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTCC TCAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTCC < 41bp 1 0.381868262515599 1 0.553581058979034 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EEF2K ENSG00000103319 CDS Human protein_coding chr16:22237252 chr16:22237232 nonsynonymous SNV 0.998 1 1 hm5C_associated_SNPs_44420 0 0 1 0 1 Nucleus 1 0.500231643898152 0.892837882041932 0.999536712203696 hm5C_site_43308 DeepMRMD:0.892837882041932;iRNA_m5C:0.999536712203696 43309 chr7 99956632 99956632 1 + G T UCEC 99956624 + 99956604 99956644 41 ACCAGTCTGTGTATTTCTGCCGAGTCGAGCTGGACACCCGG ACCAGTCTGTGTATTTCTGCCGAGTCGATCTGGACACCCGG < 41bp 1 0.55174079981179 1 0.730578780174255 experiment 0.896518400376421 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956624 chr7:99956632 nonsynonymous SNV 0.000 0 29 hm5C_associated_SNPs_44422 0 0 1 0 0 Cytosol 1 0.501595957020425 0.53884243965149 0.99680808595915 hm5C_site_43309 DeepMRMD:0.53884243965149;iRNA_m5C:0.99680808595915 43310 chr7 99956632 99956632 1 + G T UCEC 99956638 + 99956618 99956658 41 TTCTGCCGAGTCGAGCTGGACACCCGGAGATCAGGGAGGCA TTCTGCCGAGTCGATCTGGACACCCGGAGATCAGGGAGGCA < 41bp 1 0.299760467944694 1 0.0317302644252777 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956638 chr7:99956632 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_44423 0 0 1 0 0 Cytosol 1 0.500231643916136 1 0.999536712167728 hm5C_site_43310 DeepMRMD:1;iRNA_m5C:0.999536712167728 43311 chrX 73043360 73043360 1 + T C UCEC 73043361 - 73043341 73043381 41 GATTCATTTGATAAACAAAGCATCTTTTATGTGGAATATAC GATTCATTTGATAAACAAAGCGTCTTTTATGTGGAATATAC < 41bp 1 0.0519678644658784 1 0.0483934581279755 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043361 chrX:73043360 . . 0 22 hm5C_associated_SNPs_44424 0 0 1 0 0 unknown 1 0.500270824599566 1 0.999458350800867 hm5C_site_43311 DeepMRMD:1;iRNA_m5C:0.999458350800867 43312 chr7 66489937 66489937 1 + C T UCEC 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGATCATCAGAGCCTAAATTCCATT < 41bp 1 0.472691860656756 1 0.110724627971649 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489937 synonymous SNV . 0 20 hm5C_associated_SNPs_44425 0 0 0 0 2 Endoplasmic reticulum 1 0.500231485207153 1 0.999537029585693 hm5C_site_43312 DeepMRMD:1;iRNA_m5C:0.999537029585693 43313 chr21 45725246 45725246 1 + T C UCEC 45725240 + 45725220 45725260 41 CAGGGTAGAGGTCGAGAGTCCTCTCGTGGGGGTCTCCATGT CAGGGTAGAGGTCGAGAGTCCTCTCGCGGGGGTCTCCATGT < 41bp 1 0.196322227038682 1 0.0775333344936371 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PFKL ENSG00000141959 CDS Human protein_coding chr21:45725240 chr21:45725246 synonymous SNV . 0 27 hm5C_associated_SNPs_44426 0 0 0 0 1 Ribosome 1 0.500231643921084 1 0.999536712157833 hm5C_site_43313 DeepMRMD:1;iRNA_m5C:0.999536712157833 43314 chr3 25542789 25542789 1 + C A UCEC 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGATT < 41bp 1 0.21537272436118 1 0.0710446536540985 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542789 stopgain 1.000 1 39 hm5C_associated_SNPs_44427 0 0 1 0 1 nucleoplasm 1 0.500231643921103 1 0.999536712157794 hm5C_site_43314 DeepMRMD:1;iRNA_m5C:0.999536712157794 43315 chr17 57918663 57918663 1 + A C UCEC 57918672 + 57918652 57918692 41 TTGACTGTTGAATCTCATGGCAACACCAGTCGATGGGCTGT TTGACTGTTGACTCTCATGGCAACACCAGTCGATGGGCTGT < 41bp 1 0.668150669351871 1 0.179440349340439 experiment 0.663698661296258 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control MIR21 ENSG00000199004 ncRNA_exonic Human other chr17:57918672 chr17:57918663 . . 0 12 hm5C_associated_SNPs_44428 0 0 1 0 0 unknown 1 0.500231643842826 1 0.999536712314348 hm5C_site_43315 DeepMRMD:1;iRNA_m5C:0.999536712314348 43316 chr8 22862106 22862106 1 + A G UCEC 22862102 + 22862082 22862122 41 GCTGGCCACGCATGTGCCCACAGTATGGGCCATCGACCAAT GCTGGCCACGCATGTGCCCACAGTGTGGGCCATCGACCAAT < 41bp 1 0.566773852048427 1 0.0860329866409302 experiment 0.866452295903147 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862102 chr8:22862106 synonymous SNV . 0 25 hm5C_associated_SNPs_44430 0 0 0 0 1 cytosol 1 0.500245336143799 1 0.999509327712401 hm5C_site_43316 DeepMRMD:1;iRNA_m5C:0.999509327712401 43317 chr6 31602069 31602069 1 + A G UCEC 31602058 + 31602038 31602078 41 CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAG CTGGATTCTTGGGCTCTAAGCCTGAGGGCCCGGGCCCTCAG < 41bp 1 0.506333500521137 1 0.275240898132324 experiment 0.987332998957727 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602058 chr6:31602069 synonymous SNV . 0 32 hm5C_associated_SNPs_44431 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43317 DeepMRMD:1;iRNA_m5C:0.999536712157815 43318 chr6 31602069 31602069 1 + A G UCEC 31602059 + 31602039 31602079 41 TGGATTCTTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGG TGGATTCTTGGGCTCTAAGCCTGAGGGCCCGGGCCCTCAGG < 41bp 1 0.508767076827831 1 0.817206203937531 experiment 0.982465846344339 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602059 chr6:31602069 synonymous SNV . 0 31 hm5C_associated_SNPs_44432 0 0 1 0 2 Ribosome 1 0.500231643921078 0.365587592124938 0.999536712157844 hm5C_site_43318 DeepMRMD:0.365587592124938;iRNA_m5C:0.999536712157844 43319 chr6 31602069 31602069 1 + A G UCEC 31602066 + 31602046 31602086 41 TTGGGCTCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTC TTGGGCTCTAAGCCTGAGGGCCCGGGCCCTCAGGCAGAGTC < 41bp 1 0.360259788178611 1 0.493091762065887 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602066 chr6:31602069 synonymous SNV . 0 24 hm5C_associated_SNPs_44433 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43319 DeepMRMD:1;iRNA_m5C:0.999536712157815 43320 chr6 31602069 31602069 1 + A G UCEC 31602072 + 31602052 31602092 41 TCTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGA TCTAAGCCTGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGA < 41bp 1 0.137638330160281 1 0.0436141490936279 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602072 chr6:31602069 synonymous SNV . 0 18 hm5C_associated_SNPs_44434 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43320 DeepMRMD:1;iRNA_m5C:0.999536712157815 43321 chr6 31602069 31602069 1 + A G UCEC 31602073 + 31602053 31602093 41 CTAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGAT CTAAGCCTGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGAT < 41bp 1 0.281277589257661 1 0.100325286388397 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602073 chr6:31602069 synonymous SNV . 0 17 hm5C_associated_SNPs_44435 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_43321 DeepMRMD:1;iRNA_m5C:0.999536712157815 43322 chr6 31602069 31602069 1 + A G UCEC 31602074 + 31602054 31602094 41 TAAGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATA TAAGCCTGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGATA < 41bp 1 0.380609914488213 1 0.123026043176651 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602074 chr6:31602069 synonymous SNV . 0 16 hm5C_associated_SNPs_44436 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43322 DeepMRMD:1;iRNA_m5C:0.999536712157815 43323 chr6 31602069 31602069 1 + A G UCEC 31602076 + 31602056 31602096 41 AGCCTGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACA AGCCTGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGATACA < 41bp 1 0.466257789770779 1 0.832018733024597 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602076 chr6:31602069 synonymous SNV . 0 14 hm5C_associated_SNPs_44437 0 0 1 0 2 Ribosome 1 0.500231643896691 0.335962533950806 0.999536712206619 hm5C_site_43323 DeepMRMD:0.335962533950806;iRNA_m5C:0.999536712206619 43324 chr6 31602069 31602069 1 + A G UCEC 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCGGGCCCTCAGGCAGAGTCCAGAGATACAGGCA < 41bp 1 0.449209213457156 1 0.824256181716919 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602069 synonymous SNV . 0 10 hm5C_associated_SNPs_44438 0 0 1 0 2 Ribosome 1 0.500231643921089 0.351487636566162 0.999536712157822 hm5C_site_43324 DeepMRMD:0.351487636566162;iRNA_m5C:0.999536712157822 43325 chr3 37367126 37367126 1 + T C UCEC 37367140 + 37367120 37367160 41 CTAGGATTTCTCATTGTCAGCACCGTACAACTAAAGTTAAG CTAGGACTTCTCATTGTCAGCACCGTACAACTAAAGTTAAG < 41bp 1 0.282535718852797 1 0.196582466363907 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367140 chr3:37367126 nonsynonymous SNV 0.959 1 7 hm5C_associated_SNPs_44439 0 0 1 0 0 Cytosol 1 0.500231643902091 1 0.999536712195818 hm5C_site_43325 DeepMRMD:1;iRNA_m5C:0.999536712195818 43326 chr3 37367126 37367126 1 + T C UCEC 37367142 + 37367122 37367162 41 AGGATTTCTCATTGTCAGCACCGTACAACTAAAGTTAAGGA AGGACTTCTCATTGTCAGCACCGTACAACTAAAGTTAAGGA < 41bp 1 0.0508303090735674 1 0.211512625217438 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367142 chr3:37367126 nonsynonymous SNV 0.959 1 5 hm5C_associated_SNPs_44440 0 0 1 0 0 Cytosol 1 0.500231643921001 1 0.999536712157998 hm5C_site_43326 DeepMRMD:1;iRNA_m5C:0.999536712157998 43327 chr5 50058993 50058993 1 + T C UCEC 50059003 + 50058983 50059023 41 TGAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAA TGAACTATGACGGGGAACTGCACAAGCACCCACAACTGGAA < 41bp 1 0.684679312245278 1 0.358957499265671 experiment 0.630641375509443 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PARP8 ENSG00000151883 CDS Human protein_coding chr5:50059003 chr5:50058993 synonymous SNV . 0 11 hm5C_associated_SNPs_44441 0 0 1 0 2 Nucleus 1 0.500231643921928 1 0.999536712156143 hm5C_site_43327 DeepMRMD:1;iRNA_m5C:0.999536712156143 43328 chr15 93528744 93528744 1 + G T UCEC 93528742 + 93528722 93528762 41 TCTCAGGCTCAGACAAATGACAGTGACTCTGACACTGAGTC TCTCAGGCTCAGACAAATGACATTGACTCTGACACTGAGTC < 41bp 1 0.0798740599310239 1 0.0223695933818817 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528742 chr15:93528744 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_44442 0 0 1 0 1 Nucleus 1 0.500226470361084 1 0.999547059277833 hm5C_site_43328 DeepMRMD:1;iRNA_m5C:0.999547059277833 43329 chr17 29683531 29683531 1 + C T UCEC 29683551 + 29683531 29683571 41 CAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAG TAAGAAATGGAATCAGGGATCACAACACCCCCCAAAATGAG < 41bp 1 0.285015108331821 1 0.470875889062881 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NF1 ENSG00000196712 CDS Human protein_coding chr17:29683551 chr17:29683531 stopgain 1.000 1 1 hm5C_associated_SNPs_44443 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43329 DeepMRMD:1;iRNA_m5C:0.999536712157815 43330 chr6 117859947 117859947 1 + A G UCEC 117859950 + 117859930 117859970 41 ACAGTAGCAACAACCACAAACCACGAGAGTGGCTGGAGATC ACAGTAGCAACAACCACGAACCACGAGAGTGGCTGGAGATC < 41bp 1 0.194926378303533 1 0.163222253322601 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117859950 chr6:117859947 nonsynonymous SNV 0.050 1 18 hm5C_associated_SNPs_44444 0 0 0 0 1 Endoplasmic reticulum 1 0.500240746257395 1 0.999518507485209 hm5C_site_43330 DeepMRMD:1;iRNA_m5C:0.999518507485209 43331 chr1 151538654 151538654 1 + C T UCEC 151538645 + 151538625 151538665 41 TTTTCTTTGAACAGGTGGTGCTAGAAAAGCCAAATGGCTTT TTTTCTTTGAACAGGTGGTGCTAGAAAAGTCAAATGGCTTT < 41bp 1 0.541847320620979 1 0.17065155506134 experiment 0.916305358758043 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151538645 chr1:151538654 nonsynonymous SNV 0.998 0 30 hm5C_associated_SNPs_44445 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43331 DeepMRMD:1;iRNA_m5C:0.999536712157815 43332 chr10 17277849 17277849 1 + T C UCEC 17277858 + 17277838 17277878 41 TTTATAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCTG TTTATAGGATTCCTCTGCCTCTTCCAAACTTTTCCTCCCTG < 41bp 1 0.0838687607755544 1 0.647125363349915 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277858 chr10:17277849 nonsynonymous SNV 0.998 2 12 hm5C_associated_SNPs_44446 0 0 1 1 2 Ribosome 1 0.500231643921092 0.70574927330017 0.999536712157815 hm5C_site_43332 DeepMRMD:0.70574927330017;iRNA_m5C:0.999536712157815 43333 chr3 38294331 38294331 1 + T C UCEC 38294312 + 38294292 38294332 41 TTTGTTTGGTTCTTAGGCATCTGGTGTCGAAGGCTCAGATA TTTGTTTGGTTCTTAGGCATCTGGTGTCGAAGGCTCAGACA < 41bp 1 0.596211624372551 1 0.448002398014069 experiment 0.807576751254899 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38294312 chr3:38294331 synonymous SNV . 0 40 hm5C_associated_SNPs_44447 0 0 1 0 1 Ribosome 1 0.500231643919018 1 0.999536712161964 hm5C_site_43333 DeepMRMD:1;iRNA_m5C:0.999536712161964 43334 chr10 112361866 112361866 1 + A G UCEC 112361869 + 112361849 112361889 41 GTTAGATAGGGGTTACAAATCAATCATGGAACTGATGAATG GTTAGATAGGGGTTACAGATCAATCATGGAACTGATGAATG < 41bp 1 0.213378074679281 1 0.0926706194877625 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112361869 chr10:112361866 nonsynonymous SNV 0.954 2 18 hm5C_associated_SNPs_44449 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43334 DeepMRMD:1;iRNA_m5C:0.999536712157815 43335 chr6 42975955 42975955 1 + G A UCEC 42975958 + 42975938 42975978 41 GGTTCATCTACGAGACGGAGCATCACAACGGGATTGCTGAG GGTTCATCTACGAGACGAAGCATCACAACGGGATTGCTGAG < 41bp 1 0.397253467756598 1 0.0768393278121948 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42975958 chr6:42975955 nonsynonymous SNV 0.959 4 18 hm5C_associated_SNPs_44450 0 0 1 0 2 Ribosome 1 0.500233417601039 1 0.999533164797922 hm5C_site_43335 DeepMRMD:1;iRNA_m5C:0.999533164797922 43336 chr2 228162512 228162512 1 + C A UCEC 228162527 + 228162507 228162547 41 GTCTGCCCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT GTCTGACCGGTGCAATTATCCCTGGCCAGACAGGAAATCGT < 41bp 1 0.173240080070546 1 0.222166538238525 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228162527 chr2:228162512 nonsynonymous SNV 0.389 4 6 hm5C_associated_SNPs_44451 0 0 0 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43336 DeepMRMD:1;iRNA_m5C:0.999536712157815 43337 chr20 1902316 1902316 1 + G A UCEC 1902319 + 1902299 1902339 41 ACGTCACCTTGCAGGGGGACCCTCTTCGTGGGACTGCCAAC ACGTCACCTTGCAGGGGAACCCTCTTCGTGGGACTGCCAAC < 41bp 1 0.105600632966842 1 0.0221747756004333 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902319 chr20:1902316 nonsynonymous SNV 0.022 0 18 hm5C_associated_SNPs_44452 0 0 0 0 1 Nucleus 1 0.500231643914693 1 0.999536712170614 hm5C_site_43337 DeepMRMD:1;iRNA_m5C:0.999536712170614 43338 chr1 22332246 22332246 1 + C A UCEC 22332227 + 22332207 22332247 41 GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCT GAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGAT < 41bp 1 0.529291891734113 1 0.0726851224899292 experiment 0.941416216531775 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332227 chr1:22332246 nonsynonymous SNV 0.000 1 40 hm5C_associated_SNPs_44453 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920317 1 0.999536712159366 hm5C_site_43338 DeepMRMD:1;iRNA_m5C:0.999536712159366 43339 chr1 22332246 22332246 1 + C A UCEC 22332228 + 22332208 22332248 41 AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTG AGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGATG < 41bp 1 0.108223013892647 1 0.0238616466522217 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332228 chr1:22332246 nonsynonymous SNV 0.000 1 39 hm5C_associated_SNPs_44454 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643922617 1 0.999536712154767 hm5C_site_43339 DeepMRMD:1;iRNA_m5C:0.999536712154767 43340 chr1 22332246 22332246 1 + C A UCEC 22332229 + 22332209 22332249 41 GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGT GGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGATGT < 41bp 1 0.0713132559119318 1 0.0831275582313538 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332229 chr1:22332246 nonsynonymous SNV 0.000 1 38 hm5C_associated_SNPs_44455 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643786722 1 0.999536712426556 hm5C_site_43340 DeepMRMD:1;iRNA_m5C:0.999536712426556 43341 chr1 22332246 22332246 1 + C A UCEC 22332230 + 22332210 22332250 41 GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTT GGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGATGTT < 41bp 1 0.40649654088153 1 0.140416264533997 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332230 chr1:22332246 nonsynonymous SNV 0.000 1 37 hm5C_associated_SNPs_44456 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921104 1 0.999536712157792 hm5C_site_43341 DeepMRMD:1;iRNA_m5C:0.999536712157792 43342 chr1 22332246 22332246 1 + C A UCEC 22332233 + 22332213 22332253 41 CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGT CCCGAGCAGGTGATCCCCATCAACTCTGAGGAGATGTTTGT < 41bp 1 0.398552506503334 1 0.689794421195984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332233 chr1:22332246 nonsynonymous SNV 0.000 1 34 hm5C_associated_SNPs_44457 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392115 0.620411157608032 0.9995367121577 hm5C_site_43342 DeepMRMD:0.620411157608032;iRNA_m5C:0.9995367121577 43343 chr1 22332246 22332246 1 + C A UCEC 22332236 + 22332216 22332256 41 GAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGTGCA GAGCAGGTGATCCCCATCAACTCTGAGGAGATGTTTGTGCA < 41bp 1 0.591894070050111 1 0.47909414768219 experiment 0.816211859899777 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332236 chr1:22332246 nonsynonymous SNV 0.000 1 31 hm5C_associated_SNPs_44458 0 0 0 0 2 Endoplasmic reticulum 1 0.500232989384885 1 0.999534021230229 hm5C_site_43343 DeepMRMD:1;iRNA_m5C:0.999534021230229 43344 chr1 22332246 22332246 1 + C A UCEC 22332255 + 22332235 22332275 41 ACTCTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCG ACTCTGAGGAGATGTTTGTGCATCCACTCTGGAACCGCTCG < 41bp 1 0.210908415250285 1 0.328152775764465 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332255 chr1:22332246 nonsynonymous SNV 0.000 1 12 hm5C_associated_SNPs_44459 0 0 0 0 2 Endoplasmic reticulum 1 0.500232456592571 1 0.999535086814857 hm5C_site_43344 DeepMRMD:1;iRNA_m5C:0.999535086814857 43345 chr1 22332246 22332246 1 + C A UCEC 22332258 + 22332238 22332278 41 CTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGT CTGAGGAGATGTTTGTGCATCCACTCTGGAACCGCTCGTGT < 41bp 1 0.253972831154546 1 0.0778161585330963 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332258 chr1:22332246 nonsynonymous SNV 0.000 1 9 hm5C_associated_SNPs_44460 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921277 1 0.999536712157445 hm5C_site_43345 DeepMRMD:1;iRNA_m5C:0.999536712157445 43346 chr1 22332246 22332246 1 + C A UCEC 22332259 + 22332239 22332279 41 TGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTG TGAGGAGATGTTTGTGCATCCACTCTGGAACCGCTCGTGTG < 41bp 1 0.367715561287267 1 0.0775362551212311 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332259 chr1:22332246 nonsynonymous SNV 0.000 1 8 hm5C_associated_SNPs_44461 0 0 0 0 2 Endoplasmic reticulum 1 0.500254395216828 1 0.999491209566345 hm5C_site_43346 DeepMRMD:1;iRNA_m5C:0.999491209566345 43347 chr1 22332246 22332246 1 + C A UCEC 22332261 + 22332241 22332281 41 AGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG AGGAGATGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTG < 41bp 1 0.614282692832475 1 0.144934415817261 experiment 0.771434614335049 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332261 chr1:22332246 nonsynonymous SNV 0.000 1 6 hm5C_associated_SNPs_44462 0 0 0 0 2 Endoplasmic reticulum 1 0.50014300984992 1 0.99971398030016 hm5C_site_43347 DeepMRMD:1;iRNA_m5C:0.99971398030016 43348 chr14 89075645 89075645 1 + T C UCEC 89075656 + 89075636 89075676 41 GAAAAATGTTTGTTTGTTCACCCAAATTGTAAATATGATGC GAAAAATGTCTGTTTGTTCACCCAAATTGTAAATATGATGC < 41bp 1 0.467443342334754 1 0.0506678223609924 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89075656 chr14:89075645 synonymous SNV . 0 10 hm5C_associated_SNPs_44463 0 0 1 0 1 Nucleus 1 0.500234035140106 1 0.999531929719788 hm5C_site_43348 DeepMRMD:1;iRNA_m5C:0.999531929719788 43349 chr6 30547710 30547710 1 + C T UCEC 30547729 + 30547709 30547749 41 CCGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG CTGTATCTGAGGAACAGCAGCCTGCACTCAAGGGCAAAAAG < 41bp 1 0.0653218577746449 1 0.0978022813796997 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547729 chr6:30547710 synonymous SNV . 0 2 hm5C_associated_SNPs_44464 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643940375 1 0.99953671211925 hm5C_site_43349 DeepMRMD:1;iRNA_m5C:0.99953671211925 43350 chr13 111154091 111154091 1 + A G UCEC 111154071 + 111154051 111154091 41 GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCA GGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCG < 41bp 1 0.00785422214523079 1 0.371289789676666 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111154071 chr13:111154091 synonymous SNV . 0 41 hm5C_associated_SNPs_44465 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_43350 DeepMRMD:1;iRNA_m5C:0.999536712157817 43351 chr20 42089371 42089371 1 + C T UCEC 42089358 + 42089338 42089378 41 TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCACGTTCTCG TCCAGTTCCAGGTCGCGGAGCAAAGGTCGATCATGTTCTCG < 41bp 1 0.450620460442912 1 0.320768713951111 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089358 chr20:42089371 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_44466 0 0 1 0 1 Nucleus 1 0.500231639934657 1 0.999536720130686 hm5C_site_43351 DeepMRMD:1;iRNA_m5C:0.999536720130686 43352 chr4 8284212 8284212 1 + A G UCEC 8284228 + 8284208 8284248 41 GCTGACGTGGTGGAGAAGATCGCACCAGCCGTGGTCCACAT GCTGGCGTGGTGGAGAAGATCGCACCAGCCGTGGTCCACAT < 41bp 1 0.62906567782043 1 0.291528761386871 experiment 0.74186864435914 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8284228 chr4:8284212 nonsynonymous SNV 0.497 5 5 hm5C_associated_SNPs_44467 0 0 0 0 2 exosome 1 0.50026532094053 1 0.99946935811894 hm5C_site_43352 DeepMRMD:1;iRNA_m5C:0.99946935811894 43353 chr11 61404692 61404692 1 + T C UCEC 61404674 + 61404654 61404694 41 GAGCCAGTGAAGCCACGCTGCTGACCATGCTCAACATCTCC GAGCCAGTGAAGCCACGCTGCTGACCATGCTCAACATCCCC < 41bp 1 0.222737922579915 1 0.131803542375565 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404674 chr11:61404692 . . 0 39 hm5C_associated_SNPs_44468 0 0 1 0 0 unknown 1 0.500231647088093 1 0.999536705823815 hm5C_site_43353 DeepMRMD:1;iRNA_m5C:0.999536705823815 43354 chr11 61404692 61404692 1 + T C UCEC 61404700 + 61404680 61404720 41 ATGCTCAACATCTCCCCCTTCTCCTCTGGGCTGGTCATCCA ATGCTCAACATCCCCCCCTTCTCCTCTGGGCTGGTCATCCA < 41bp 1 0.486585979706815 1 0.812409043312073 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404700 chr11:61404692 . . 0 13 hm5C_associated_SNPs_44469 0 0 1 0 0 unknown 1 0.500231643921461 0.375181913375854 0.999536712157079 hm5C_site_43354 DeepMRMD:0.375181913375854;iRNA_m5C:0.999536712157079 43355 chr11 61404692 61404692 1 + T C UCEC 61404702 + 61404682 61404722 41 GCTCAACATCTCCCCCTTCTCCTCTGGGCTGGTCATCCAGC GCTCAACATCCCCCCCTTCTCCTCTGGGCTGGTCATCCAGC < 41bp 1 0.181330043199169 1 0.05107381939888 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404702 chr11:61404692 . . 0 11 hm5C_associated_SNPs_44470 0 0 1 0 0 unknown 1 0.500231643921095 1 0.99953671215781 hm5C_site_43355 DeepMRMD:1;iRNA_m5C:0.99953671215781 43356 chr19 30500184 30500184 1 + A G UCEC 30500196 + 30500176 30500216 41 TGGTGATAACGACCATGAGGCTTTAGGGGTTGGAGATAATT TGGTGATAGCGACCATGAGGCTTTAGGGGTTGGAGATAATT < 41bp 1 0.281249484113206 1 0.12163981795311 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control URI1 ENSG00000105176 CDS Human protein_coding chr19:30500196 chr19:30500184 nonsynonymous SNV 0.018 0 9 hm5C_associated_SNPs_44471 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_43356 DeepMRMD:1;iRNA_m5C:0.999536712157816 43357 chrX 148628308 148628308 1 + T G UCEC 148628325 + 148628305 148628345 41 ACTTTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT ACTGTGCAATGCCCCGAAGACTTAACTCCCGATGAGGTTGT < 41bp 1 0.382073763581791 1 0.191144317388535 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CXorf40A ENSG00000197620 CDS Human protein_coding chrX:148628325 chrX:148628308 nonsynonymous SNV 0.197 1 4 hm5C_associated_SNPs_44472 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_43357 DeepMRMD:1;iRNA_m5C:0.999536712157815 43358 chr1 198233295 198233295 1 + T C UCEC 198233296 + 198233276 198233316 41 ATAAAATATTATGCATCATTCATTGAAGATAATGAACTAAA ATAAAATATTATGCATCATCCATTGAAGATAATGAACTAAA < 41bp 1 0.0949438224529873 1 0.439428567886353 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198233296 chr1:198233295 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_44473 0 0 1 0 2 Nucleus 1 0.500231619388575 1 0.99953676122285 hm5C_site_43358 DeepMRMD:1;iRNA_m5C:0.99953676122285 43359 chr14 70235555 70235555 1 + A G UCEC 70235540 + 70235520 70235560 41 CTATTGAACATGCTAGGGCTCGGTCACGAGGTGGAAGAGGT CTATTGAACATGCTAGGGCTCGGTCACGAGGTGGAGGAGGT < 41bp 1 0.182081773885974 1 0.255148589611053 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70235540 chr14:70235555 nonsynonymous SNV 1.000 0 36 hm5C_associated_SNPs_44474 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_43359 DeepMRMD:1;iRNA_m5C:0.999536712157816 43360 chr20 32665012 32665012 1 + C T UCEC 32664995 + 32664975 32665015 41 GCCTGCCCCAGGGGGAAGCACGGACCCGAGACGACGGCGAT GCCTGCCCCAGGGGGAAGCACGGACCCGAGACGACGGTGAT < 41bp 1 0.387177096645043 1 0.72720742225647 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32664995 chr20:32665012 synonymous SNV . 0 38 hm5C_associated_SNPs_44475 0 0 1 0 1 Cytosol 1 0.500231643921092 0.54558515548706 0.999536712157816 hm5C_site_43360 DeepMRMD:0.54558515548706;iRNA_m5C:0.999536712157816 43361 chr20 32665012 32665012 1 + C T UCEC 32665000 + 32664980 32665020 41 CCCCAGGGGGAAGCACGGACCCGAGACGACGGCGATGAGGA CCCCAGGGGGAAGCACGGACCCGAGACGACGGTGATGAGGA < 41bp 1 0.352804870305256 1 0.583639800548553 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665000 chr20:32665012 synonymous SNV . 0 33 hm5C_associated_SNPs_44477 0 0 1 0 1 Cytosol 1 0.500231644165374 0.832720398902894 0.999536711669251 hm5C_site_43361 DeepMRMD:0.832720398902894;iRNA_m5C:0.999536711669251 43362 chr20 32665012 32665012 1 + C T UCEC 32665025 + 32665005 32665045 41 ACGACGGCGATGAGGAAGGGCTCCTGACACACAGCGAGGAA ACGACGGTGATGAGGAAGGGCTCCTGACACACAGCGAGGAA < 41bp 1 0.579881519104342 1 0.19310387969017 experiment 0.840236961791317 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665025 chr20:32665012 synonymous SNV . 0 8 hm5C_associated_SNPs_44478 0 0 1 0 1 Cytosol 1 0.500231643922692 1 0.999536712154616 hm5C_site_43362 DeepMRMD:1;iRNA_m5C:0.999536712154616 43363 chr20 32665012 32665012 1 + C T UCEC 32665027 + 32665007 32665047 41 GACGGCGATGAGGAAGGGCTCCTGACACACAGCGAGGAAGA GACGGTGATGAGGAAGGGCTCCTGACACACAGCGAGGAAGA < 41bp 1 0.542347618782042 1 0.109713464975357 experiment 0.915304762435917 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALY ENSG00000125970 CDS Human protein_coding chr20:32665027 chr20:32665012 synonymous SNV . 0 6 hm5C_associated_SNPs_44479 0 0 1 0 1 Cytosol 1 0.500231643927612 1 0.999536712144777 hm5C_site_43363 DeepMRMD:1;iRNA_m5C:0.999536712144777 43364 chr16 4498839 4498839 1 + C T UCEC 4498845 + 4498825 4498865 41 TCCACATCAAGATACGAGTTCCAAAGTAAGTGCCCCCTAGG TCCACATCAAGATATGAGTTCCAAAGTAAGTGCCCCCTAGG < 41bp 1 0.378657677609107 1 0.290245622396469 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJA3 ENSG00000103423 CDS Human protein_coding chr16:4498845 chr16:4498839 stopgain 0.985 1 15 hm5C_associated_SNPs_44481 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43364 DeepMRMD:1;iRNA_m5C:0.999536712157815 43365 chr16 67315516 67315516 1 + C T UCEC 67315518 + 67315498 67315538 41 TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTGCCTTCC TGCTGCTAGTGGGAAGCATGCTGCTGAAGGAAGTGCCTTCC < 41bp 1 0.517089169830638 1 0.16764509677887 experiment 0.965821660338724 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67315518 chr16:67315516 nonsynonymous SNV 0.288 0 19 hm5C_associated_SNPs_44482 0 0 1 0 2 Cytosol 1 0.500231643921175 1 0.999536712157649 hm5C_site_43365 DeepMRMD:1;iRNA_m5C:0.999536712157649 43366 chr17 7214407 7214407 1 + T C UCEC 7214415 + 7214395 7214435 41 CAACTCATAATATGGATGTCCCCAACATCAAAAGGAATGAC CAACTCATAATACGGATGTCCCCAACATCAAAAGGAATGAC < 41bp 1 0.24333714949291 1 0.112840831279755 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214415 chr17:7214407 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_44483 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_43366 DeepMRMD:1;iRNA_m5C:0.999536712157817 43367 chr17 7214407 7214407 1 + T C UCEC 7214416 + 7214396 7214436 41 AACTCATAATATGGATGTCCCCAACATCAAAAGGAATGACT AACTCATAATACGGATGTCCCCAACATCAAAAGGAATGACT < 41bp 1 0.0603587523123711 1 0.151366025209427 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214416 chr17:7214407 nonsynonymous SNV 1.000 2 12 hm5C_associated_SNPs_44484 0 0 1 0 2 Ribosome 1 0.500231642421748 1 0.999536715156503 hm5C_site_43367 DeepMRMD:1;iRNA_m5C:0.999536715156503 43368 chrX 153696520 153696520 1 + G A UCEC 153696529 + 153696509 153696549 41 ACGCCGTGCGCGTGCTCTTCCCGGGCATCGAGGCCCACCCG ACGCCGTGCGCATGCTCTTCCCGGGCATCGAGGCCCACCCG < 41bp 1 0.545288064937401 1 0.865538358688354 experiment 0.909423870125198 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696529 chrX:153696520 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_44485 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921105 0.268923282623292 0.99953671215779 hm5C_site_43368 DeepMRMD:0.268923282623292;iRNA_m5C:0.99953671215779 43369 chrX 153696520 153696520 1 + G A UCEC 153696537 + 153696517 153696557 41 CGCGTGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA CGCATGCTCTTCCCGGGCATCGAGGCCCACCCGGTGCTCAA < 41bp 1 0.634750823578127 1 0.948688387870789 experiment 0.730498352843747 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696537 chrX:153696520 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_44486 0 0 0 0 2 Endoplasmic reticulum 1 0.500231657894403 0.102623224258422 0.999536684211195 hm5C_site_43369 DeepMRMD:0.102623224258422;iRNA_m5C:0.999536684211195 43370 chr2 170804141 170804141 1 + T C UCEC 170804126 + 170804106 170804146 41 TTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGT TTAGTGTCAAACATGCGACACTTTATAAACTATGTCAGAGT < 41bp 1 0.0843020984404648 1 0.0685591399669647 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170804126 chr2:170804141 synonymous SNV . 0 36 hm5C_associated_SNPs_44487 0 0 1 0 2 Cytosol 1 0.499969670604092 1 1 hm5C_site_43370 DeepMRMD:1;iRNA_m5C:1 43371 chrX 70510550 70510550 1 + A G UCEC 70510542 + 70510522 70510562 41 AAAACCATACTCCAAGAAAGCATCATCAACATCACCACCAG AAAACCATACTCCAAGAAAGCATCATCAGCATCACCACCAG < 41bp 1 0.545287033387371 1 0.108000129461288 experiment 0.909425933225258 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70510542 chrX:70510550 synonymous SNV . 0 29 hm5C_associated_SNPs_44488 0 0 1 0 1 Nucleus 1 0.500231644047694 1 0.999536711904611 hm5C_site_43371 DeepMRMD:1;iRNA_m5C:0.999536711904611 43372 chrX 51641240 51641240 1 + C A UCEC 51641235 + 51641215 51641255 41 AAGACACACCCAAGCTCGGTCTCCTCTTGGTGATTCTGGGT AAGACACACCCAAGCTCGGTCTCCTATTGGTGATTCTGGGT < 41bp 1 0.219308299982675 1 0.574397444725037 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51641235 chrX:51641240 synonymous SNV . 0 26 hm5C_associated_SNPs_44489 0 0 1 0 1 chromatin 1 0.500231642320343 0.851205110549926 0.999536715359313 hm5C_site_43372 DeepMRMD:0.851205110549926;iRNA_m5C:0.999536715359313 43373 chr7 72396967 72396967 1 + T C UCEC 72396980 + 72396960 72397000 41 AGCCCAGTGACTGTGAGGATCGCCCCTCCTGACAGAAGATT AGCCCAGCGACTGTGAGGATCGCCCCTCCTGACAGAAGATT < 41bp 1 0.122120123672815 1 0.089171439409256 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control POM121 ENSG00000196313 CDS Human protein_coding chr7:72396980 chr7:72396967 nonsynonymous SNV 0.984 1 8 hm5C_associated_SNPs_44490 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_43373 DeepMRMD:1;iRNA_m5C:0.999536712157814 43374 chr12 112321488 112321488 1 + G A UCEC 112321470 + 112321450 112321490 41 CTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAA CTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCAAA < 41bp 1 0.0332164191573055 1 0.060117244720459 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112321470 chr12:112321488 nonsynonymous SNV 0.997 3 39 hm5C_associated_SNPs_44491 0 0 1 0 1 chromatin 1 0.500231643927751 1 0.999536712144498 hm5C_site_43374 DeepMRMD:1;iRNA_m5C:0.999536712144498 43375 chrX 73043524 73043524 1 + T A UCEC 73043508 - 73043488 73043528 41 GAGGAGATGGAAAATTTTTGCAAAAAACAAGGTGTTGTGGT GAGGTGATGGAAAATTTTTGCAAAAAACAAGGTGTTGTGGT < 41bp 1 0.296360269921903 1 0.566891431808472 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043508 chrX:73043524 . . 0 5 hm5C_associated_SNPs_44492 0 0 1 1 0 unknown 1 0.500231643921094 0.866217136383056 0.999536712157812 hm5C_site_43375 DeepMRMD:0.866217136383056;iRNA_m5C:0.999536712157812 43376 chrX 73043524 73043524 1 + T A UCEC 73043534 - 73043514 73043554 41 GAAGATACATGCTTCCTGGCCTGATTGAGGAGATGGAAAAT GAAGATACATGCTTCCTGGCCTGATTGAGGTGATGGAAAAT < 41bp 1 0.0764556440879931 1 0.167967051267624 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043534 chrX:73043524 . . 0 31 hm5C_associated_SNPs_44493 0 0 1 1 0 unknown 1 0.500228646227279 1 0.999542707545442 hm5C_site_43376 DeepMRMD:1;iRNA_m5C:0.999542707545442 43377 chr2 102472581 102472581 1 + G T UCEC 102472562 + 102472542 102472582 41 AAGAAGAAGAGGAGAGGAGACGGGCAGAAGAAGAAAAGAGG AAGAAGAAGAGGAGAGGAGACGGGCAGAAGAAGAAAAGATG < 41bp 1 0.567048662330638 1 0.66192889213562 experiment 0.865902675338723 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102472562 chr2:102472581 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44494 0 0 1 0 1 Ribosome 1 0.500231643921092 0.67614221572876 0.999536712157815 hm5C_site_43377 DeepMRMD:0.67614221572876;iRNA_m5C:0.999536712157815 43378 chr2 102472581 102472581 1 + G T UCEC 102472566 + 102472546 102472586 41 AGAAGAGGAGAGGAGACGGGCAGAAGAAGAAAAGAGGAGAG AGAAGAGGAGAGGAGACGGGCAGAAGAAGAAAAGATGAGAG < 41bp 1 0.674726375984026 1 0.569165825843811 experiment 0.650547248031947 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102472566 chr2:102472581 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_44495 0 0 1 0 1 Ribosome 1 0.500231643921093 0.861668348312378 0.999536712157815 hm5C_site_43378 DeepMRMD:0.861668348312378;iRNA_m5C:0.999536712157815 43379 chr8 145065430 145065430 1 + C T UCEC 145065439 + 145065419 145065459 41 TCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGG TCTGGGGACAATTATCCTCCCCCCAACCCTGGATATCCGGG < 41bp 1 0.343806387555366 1 0.354492425918579 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065439 chr8:145065430 synonymous SNV . 0 12 hm5C_associated_SNPs_44496 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_43379 DeepMRMD:1;iRNA_m5C:0.999536712157815 43380 chr17 691347 691347 1 + C T UCEC 691367 + 691347 691387 41 CTGCAGCAAAGTGTTACTCACCAAAGGTAAGGACATCAAAG TTGCAGCAAAGTGTTACTCACCAAAGGTAAGGACATCAAAG < 41bp 1 0.354143864423848 1 0.17761766910553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRM3 ENSG00000171861 CDS Human protein_coding chr17:691367 chr17:691347 synonymous SNV . 0 1 hm5C_associated_SNPs_44497 0 0 0 0 1 chromatin 1 0.50022041401223 1 0.999559171975541 hm5C_site_43380 DeepMRMD:1;iRNA_m5C:0.999559171975541 43381 chr17 30374792 30374792 1 + C A UCEC 30374780 + 30374760 30374800 41 AGTCTCTTCTTTTCTGACAGCTGAAGAAGCATCTGTAGGGA AGTCTCTTCTTTTCTGACAGCTGAAGAAGCATATGTAGGGA < 41bp 1 0.474210091664584 1 0.746246814727783 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30374780 chr17:30374792 nonsynonymous SNV 0.011 3 33 hm5C_associated_SNPs_44498 0 0 0 0 1 chromatin 1 0.500231643921092 0.507506370544434 0.999536712157815 hm5C_site_43381 DeepMRMD:0.507506370544434;iRNA_m5C:0.999536712157815 43382 chr17 78022545 78022545 1 + T G UCEC 78022532 + 78022512 78022552 41 GGAAGCAGAAGACGAAGGGTCCCAGCTGGTGGTTTTGGACC GGAAGCAGAAGACGAAGGGTCCCAGCTGGTGGTGTTGGACC < 41bp 1 0.228666807709916 1 0.372912228107452 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022532 chr17:78022545 synonymous SNV . 0 34 hm5C_associated_SNPs_44499 0 0 1 0 1 exosome 1 0.500231643915299 1 0.999536712169403 hm5C_site_43382 DeepMRMD:1;iRNA_m5C:0.999536712169403 43383 chr5 7897298 7897298 1 + G A UCEC 7897284 + 7897264 7897304 41 AAGCCCCAGCAAAGTATGTGCAAGACAACATCCAGCTTCAT AAGCCCCAGCAAAGTATGTGCAAGACAACATCCAACTTCAT < 41bp 1 0.661192812426538 1 0.0973699986934662 experiment 0.677614375146924 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7897284 chr5:7897298 synonymous SNV . 0 35 hm5C_associated_SNPs_44500 0 0 1 1 1 Nucleus 1 0.500231643566517 1 0.999536712866965 hm5C_site_43383 DeepMRMD:1;iRNA_m5C:0.999536712866965 43384 chr6 31599576 31599576 1 + T C UCEC 31599589 + 31599569 31599609 41 GGACCTATGGGGGACGAGGGCGGGGAGCCCGAAGCCGGGAA GGACCTACGGGGGACGAGGGCGGGGAGCCCGAAGCCGGGAA < 41bp 1 0.694268747700094 1 0.923179388046265 experiment 0.611462504599812 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31599589 chr6:31599576 synonymous SNV . 0 8 hm5C_associated_SNPs_44501 0 0 1 0 0 Ribosome 1 0.500231643921092 0.15364122390747 0.999536712157815 hm5C_site_43384 DeepMRMD:0.15364122390747;iRNA_m5C:0.999536712157815 43385 chr8 56699510 56699510 1 + T C UCEC 56699490 + 56699470 56699510 41 CCTGTACAAGTCATGATGGTCATCAACAGCTAAGTGAAGTT CCTGTACAAGTCATGATGGTCATCAACAGCTAAGTGAAGTC < 41bp 1 0.513817696709072 1 0.233143389225006 experiment 0.972364606581856 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TGS1 ENSG00000137574 CDS Human protein_coding chr8:56699490 chr8:56699510 synonymous SNV . 0 41 hm5C_associated_SNPs_44502 0 0 1 0 0 Nucleus 1 0.500211709302952 1 0.999576581394095 hm5C_site_43385 DeepMRMD:1;iRNA_m5C:0.999576581394095 43386 chr11 73074836 73074836 1 + A G UCEC 73074840 + 73074820 73074860 41 ATCCGTGACCGCAGGAACAGCATGAAGCTCCAGCATGCGGC ATCCGTGACCGCAGGAGCAGCATGAAGCTCCAGCATGCGGC < 41bp 1 0.347115840214989 1 0.206224769353867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73074840 chr11:73074836 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_44503 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43386 DeepMRMD:1;iRNA_m5C:0.999536712157815 43387 chr19 42373183 42373183 1 + C T UCEC 42373193 + 42373173 42373213 41 GTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGC GTCAGAGAAATGGCGTCATGCCCAGCCACTTCAGCCGAGGC < 41bp 1 0.29683130708873 1 0.126034915447235 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373193 chr19:42373183 nonsynonymous SNV 0.992 1 11 hm5C_associated_SNPs_44506 0 0 1 0 1 Cytosol 1 0.500231643921124 1 0.999536712157752 hm5C_site_43387 DeepMRMD:1;iRNA_m5C:0.999536712157752 43388 chr19 42373183 42373183 1 + C T UCEC 42373194 + 42373174 42373214 41 TCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCT TCAGAGAAATGGCGTCATGCCCAGCCACTTCAGCCGAGGCT < 41bp 1 0.257710013195658 1 0.15303510427475 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373194 chr19:42373183 nonsynonymous SNV 0.992 1 10 hm5C_associated_SNPs_44507 0 0 1 0 1 Cytosol 1 0.500231643924006 1 0.999536712151989 hm5C_site_43388 DeepMRMD:1;iRNA_m5C:0.999536712151989 43389 chr19 42373183 42373183 1 + C T UCEC 42373198 + 42373178 42373218 41 AGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAA AGAAATGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAA < 41bp 1 0.170266940487312 1 0.296389311552048 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373198 chr19:42373183 nonsynonymous SNV 0.992 1 6 hm5C_associated_SNPs_44508 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43389 DeepMRMD:1;iRNA_m5C:0.999536712157815 43390 chr19 42373183 42373183 1 + C T UCEC 42373199 + 42373179 42373219 41 GAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAG GAAATGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAG < 41bp 1 0.220880991653195 1 0.285202711820602 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373199 chr19:42373183 nonsynonymous SNV 0.992 1 5 hm5C_associated_SNPs_44509 0 0 1 0 1 Cytosol 1 0.500231651914995 1 0.99953669617001 hm5C_site_43390 DeepMRMD:1;iRNA_m5C:0.99953669617001 43391 chr9 33366685 33366685 1 + T C UCEC 33366677 + 33366657 33366697 41 CCTCCCATGAACAGAGACCACCGCCGGATCATCCATGACTT CCTCCCATGAACAGAGACCACCGCCGGACCATCCATGACTT < 41bp 1 0.271605909552643 1 0.294218838214874 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366677 chr9:33366685 nonsynonymous SNV 0.999 1 29 hm5C_associated_SNPs_44510 0 0 1 0 2 Nucleus 1 0.500231641436607 1 0.999536717126786 hm5C_site_43391 DeepMRMD:1;iRNA_m5C:0.999536717126786 43392 chr1 147091668 147091668 1 + A G UCEC 147091688 + 147091668 147091708 41 AAACTCTGAAATGGAAGGGCCGAATGTCCCCAACCCTGCAT GAACTCTGAAATGGAAGGGCCGAATGTCCCCAACCCTGCAT < 41bp 1 0.226323060602611 1 0.152979910373688 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCL9 ENSG00000116128 CDS Human protein_coding chr1:147091688 chr1:147091668 nonsynonymous SNV 0.998 0 1 hm5C_associated_SNPs_44511 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43392 DeepMRMD:1;iRNA_m5C:0.999536712157815 43393 chr1 53420455 53420455 1 + T C UCEC 53420465 + 53420445 53420485 41 AGAAGATGAGTAAGGGAAGCCTTGGAATAAAAGTGAGTGTT AGAAGATGAGCAAGGGAAGCCTTGGAATAAAAGTGAGTGTT < 41bp 1 0.389679932793735 1 0.225809842348099 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCP2 ENSG00000116171 CDS Human protein_coding chr1:53420465 chr1:53420455 synonymous SNV . 0 11 hm5C_associated_SNPs_44512 0 0 1 0 2 Ribosome 1 0.500231650056848 1 0.999536699886304 hm5C_site_43393 DeepMRMD:1;iRNA_m5C:0.999536699886304 43394 chr12 122079093 122079093 1 + G A UCEC 122079102 + 122079082 122079122 41 AACATCGAGGCGGTGAGCAACGTGCACAATCTCAACTCGGT AACATCGAGGCAGTGAGCAACGTGCACAATCTCAACTCGGT < 41bp 1 0.12561187712475 1 0.115442663431168 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ORAI1 ENSG00000182500 CDS Human other chr12:122079102 chr12:122079093 synonymous SNV . 0 12 hm5C_associated_SNPs_44513 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643923028 1 0.999536712153944 hm5C_site_43394 DeepMRMD:1;iRNA_m5C:0.999536712153944 43395 chr17 7479876 7479876 1 + T C UCEC 7479886 + 7479866 7479906 41 GGAGACTACATGGGCGCCTCCTGTCACGCCTGTATCGGGGG GGAGACTACACGGGCGCCTCCTGTCACGCCTGTATCGGGGG < 41bp 1 0.176379893118058 1 0.29585736989975 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479886 chr17:7479876 nonsynonymous SNV 0.997 2 11 hm5C_associated_SNPs_44515 0 0 1 0 1 Cytosol 1 0.500231639685747 1 0.999536720628505 hm5C_site_43395 DeepMRMD:1;iRNA_m5C:0.999536720628505 43396 chr17 7479876 7479876 1 + T C UCEC 7479892 + 7479872 7479912 41 TACATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA TACACGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAA < 41bp 1 0.688891605817873 1 0.1119344830513 experiment 0.622216788364254 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479892 chr17:7479876 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_44516 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43396 DeepMRMD:1;iRNA_m5C:0.999536712157815 43397 chr17 7479876 7479876 1 + T C UCEC 7479895 + 7479875 7479915 41 ATGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT ACGGGCGCCTCCTGTCACGCCTGTATCGGGGGCACCAACGT < 41bp 1 0.571021315134376 1 0.298053413629532 experiment 0.857957369731247 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7479895 chr17:7479876 nonsynonymous SNV 0.997 2 2 hm5C_associated_SNPs_44517 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43397 DeepMRMD:1;iRNA_m5C:0.999536712157815 43398 chr5 139892987 139892987 1 + G A UCEC 139893005 + 139892985 139893025 41 TTGTGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG TTATGAAGGCTAAAGACCAGCAAGCTGCAGAAGCAAATAAG < 41bp 1 0.169299060593846 1 0.407388538122177 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139893005 chr5:139892987 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_44518 0 0 1 0 2 unknown 1 0.500231643920933 1 0.999536712158135 hm5C_site_43398 DeepMRMD:1;iRNA_m5C:0.999536712158135 43399 chr2 120005522 120005522 1 + G A UCEC 120005510 + 120005490 120005530 41 GCCAGAACAAGTTCTTCAAGCTGCCCGTGTCCGTGGTCAAC GCCAGAACAAGTTCTTCAAGCTGCCCGTGTCCATGGTCAAC < 41bp 1 0.291856228321795 1 0.0129623413085938 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120005510 chr2:120005522 nonsynonymous SNV 0.987 2 33 hm5C_associated_SNPs_44519 0 0 1 0 0 Ribosome 1 0.500231614276367 1 0.999536771447266 hm5C_site_43399 DeepMRMD:1;iRNA_m5C:0.999536771447266 43400 chr2 102472563 102472563 1 + G A UCEC 102472562 + 102472542 102472582 41 AAGAAGAAGAGGAGAGGAGACGGGCAGAAGAAGAAAAGAGG AAGAAGAAGAGGAGAGGAGACAGGCAGAAGAAGAAAAGAGG < 41bp 1 0.502970451480264 1 0.556477963924408 experiment 0.994059097039472 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102472562 chr2:102472563 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_44520 0 0 1 0 1 Ribosome 1 0.500231643922311 0.887044072151184 0.999536712155379 hm5C_site_43400 DeepMRMD:0.887044072151184;iRNA_m5C:0.999536712155379 43401 chr17 42085958 42085958 1 + C A UCEC 42085966 + 42085946 42085986 41 CCAGCTTCTGACCCAGGCAGCTGACCCTCACCATGGACACT CCAGCTTCTGACACAGGCAGCTGACCCTCACCATGGACACT < 41bp 1 0.0900315483358806 1 0.105683833360672 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAGS ENSG00000161653 CDS Human protein_coding chr17:42085966 chr17:42085958 nonsynonymous SNV 0.997 2 13 hm5C_associated_SNPs_44522 0 0 0 0 0 Cytosol 1 0.500231839180422 1 0.999536321639155 hm5C_site_43401 DeepMRMD:1;iRNA_m5C:0.999536321639155 43402 chr12 69119574 69119574 1 + A G UCEC 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGGTGGTAA < 41bp 1 0.401227131168993 1 0.389463245868683 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119574 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_44523 0 0 0 0 2 chromatin 1 0.500231643921122 1 0.999536712157757 hm5C_site_43402 DeepMRMD:1;iRNA_m5C:0.999536712157757 43403 chr8 28906561 28906561 1 + A G UCEC 28906553 + 28906533 28906573 41 GATGATGTCGACGGGAATGACTACTCTGAGCAGGTGAGCCC GATGATGTCGACGGGAATGACTACTCTGGGCAGGTGAGCCC < 41bp 1 0.692941925890485 1 0.378070592880249 experiment 0.61411614821903 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906553 chr8:28906561 nonsynonymous SNV 0.987 4 29 hm5C_associated_SNPs_44525 0 0 1 0 4 Nucleus 1 0.500231644010005 1 0.999536711979991 hm5C_site_43403 DeepMRMD:1;iRNA_m5C:0.999536711979991 43404 chr2 220099777 220099777 1 + C A UCEC 220099770 + 220099750 220099790 41 ACAGTCATCCCAGGCAGTTGCTGCCCCCTTGGGCCCTTTGC ACAGTCATCCCAGGCAGTTGCTGCCCCATTGGGCCCTTTGC < 41bp 1 0.636131811584922 1 0.121031910181046 experiment 0.727736376830155 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220099770 chr2:220099777 synonymous SNV . 0 28 hm5C_associated_SNPs_44526 0 0 1 0 0 chromatin 1 0.500231670047299 1 0.999536659905401 hm5C_site_43404 DeepMRMD:1;iRNA_m5C:0.999536659905401 43405 chr16 842515 842515 1 + C A UCEC 842525 + 842505 842545 41 CCGGCTGTGCCTTCGGGAGGCGGCCGACGGCGCCGGGCAGA CCGGCTGTGCATTCGGGAGGCGGCCGACGGCGCCGGGCAGA < 41bp 1 0.532767479508809 1 0.665794968605042 experiment 0.934465040982381 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842525 chr16:842515 nonsynonymous SNV 0.001 1 11 hm5C_associated_SNPs_44527 0 0 1 0 2 Nucleus 1 0.500231648696085 0.668410062789916 0.999536702607831 hm5C_site_43405 DeepMRMD:0.668410062789916;iRNA_m5C:0.999536702607831 43406 chr2 39008967 39008967 1 + G A UCEC 39008951 + 39008931 39008971 41 CTATAGACCCACCATATGGTCCAGAAAATTGCAGCAGCTCT CTATAGACCCACCATATGGTCCAGAAAATTGCAGCAACTCT < 41bp 1 0.505782303938213 1 0.152529060840607 experiment 0.988435392123574 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39008951 chr2:39008967 nonsynonymous SNV 0.998 4 37 hm5C_associated_SNPs_44528 0 0 1 3 0 Ribosome 1 0.50024345444273 1 0.99951309111454 hm5C_site_43406 DeepMRMD:1;iRNA_m5C:0.99951309111454 43407 chr21 34787291 34787291 1 + G A UCEC 34787311 + 34787291 34787331 41 GCACGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA ACACGAGGCCTGTTGTCTACCAAGTGCAGTTTAAATAGTAA < 41bp 1 0.549158109138357 1 0.5376296043396 experiment 0.901683781723286 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787311 chr21:34787291 nonsynonymous SNV 0.000 1 1 hm5C_associated_SNPs_44529 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643804733 0.9247407913208 0.999536712390535 hm5C_site_43407 DeepMRMD:0.9247407913208;iRNA_m5C:0.999536712390535 43408 chr1 200730053 200730053 1 + C A UCEC 200730036 + 200730016 200730056 41 CCAGGAACACATCAAACCACCTGTTGTTAATTTGCTTCTAT CCAGGAACACATCAAACCACCTGTTGTTAATTTGCTTATAT < 41bp 1 0.188615242782922 1 0.0576754510402679 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200730036 chr1:200730053 nonsynonymous SNV 0.998 4 38 hm5C_associated_SNPs_44530 0 0 1 0 1 chromatin 1 0.500231643921091 1 0.999536712157817 hm5C_site_43408 DeepMRMD:1;iRNA_m5C:0.999536712157817 43409 chr12 51117075 51117075 1 + C T UCEC 51117087 + 51117067 51117107 41 CCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATG CCTCACGGTCACGCTGCCCACTGTCCGAATGATTGTTGATG < 41bp 1 0.112998551820745 1 0.0541536211967468 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51117087 chr12:51117075 nonsynonymous SNV 0.615 2 9 hm5C_associated_SNPs_44531 0 0 1 0 2 Nucleus 1 0.50023160324768 1 0.999536793504639 hm5C_site_43409 DeepMRMD:1;iRNA_m5C:0.999536793504639 43410 chr11 61404722 61404722 1 + C T UCEC 61404702 + 61404682 61404722 41 GCTCAACATCTCCCCCTTCTCCTCTGGGCTGGTCATCCAGC GCTCAACATCTCCCCCTTCTCCTCTGGGCTGGTCATCCAGT < 41bp 1 0.155073128648704 1 0.204511612653732 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404702 chr11:61404722 . . 0 41 hm5C_associated_SNPs_44532 0 0 1 0 0 unknown 1 0.500231643961145 1 0.999536712077711 hm5C_site_43410 DeepMRMD:1;iRNA_m5C:0.999536712077711 43411 chr16 705356 705356 1 + G A UCEC 705347 + 705327 705367 41 GCAGTGTGCGGCTCTGGCGGCTGCGTGGCGGGGTGCTGCGT GCAGTGTGCGGCTCTGGCGGCTGCGTGGCAGGGTGCTGCGT < 41bp 1 0.480967694991231 1 0.306684136390686 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:705347 chr16:705356 nonsynonymous SNV 0.000 0 30 hm5C_associated_SNPs_44533 0 0 1 0 1 Cytosol 1 0.500231639711184 1 0.999536720577631 hm5C_site_43411 DeepMRMD:1;iRNA_m5C:0.999536720577631 43412 chr12 56537032 56537032 1 + T C UCEC 56537025 + 56537005 56537045 41 ACCCCAGGTTTGAGTGGGAACTCCCCCTGGATGAGGCCCAG ACCCCAGGTTTGAGTGGGAACTCCCCCCGGATGAGGCCCAG < 41bp 1 0.30223262669321 1 0.578854084014893 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56537025 chr12:56537032 nonsynonymous SNV 0.940 2 28 hm5C_associated_SNPs_44534 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164392083 0.842291831970214 0.999536712158341 hm5C_site_43412 DeepMRMD:0.842291831970214;iRNA_m5C:0.999536712158341 43413 chr3 39179141 39179141 1 + C T UCEC 39179132 + 39179112 39179152 41 AGCTGGCTCCTGCTGGCTGACATTTACTGCCAGGGCAGCAA AGCTGGCTCCTGCTGGCTGACATTTACTGTCAGGGCAGCAA < 41bp 1 0.16663662051739 1 0.140183985233307 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TTC21A ENSG00000168026 CDS Human protein_coding chr3:39179132 chr3:39179141 synonymous SNV . 0 30 hm5C_associated_SNPs_44535 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43413 DeepMRMD:1;iRNA_m5C:0.999536712157815 43414 chr20 57289644 57289644 1 + C T UCEC 57289631 + 57289611 57289651 41 CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTC CCTAGGACCGAGACAACAGCCCCAGCTCCTGTGTTGGCCTC < 41bp 1 0.402359525486397 1 0.477839171886444 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57289631 chr20:57289644 nonsynonymous SNV 0.993 4 34 hm5C_associated_SNPs_44536 0 0 1 0 2 cytosol 1 0.500231643920994 1 0.999536712158011 hm5C_site_43414 DeepMRMD:1;iRNA_m5C:0.999536712158011 43415 chr21 45876550 45876550 1 + G A UCEC 45876551 + 45876531 45876571 41 GGCACCGTGCGCCCACCTCGCCCCTCGCTCCTGCTGGTCTC GGCACCGTGCGCCCACCTCACCCCTCGCTCCTGCTGGTCTC < 41bp 1 0.393656558039138 1 0.382919609546661 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRRC3 ENSG00000160233 CDS Human protein_coding chr21:45876551 chr21:45876550 nonsynonymous SNV 0.013 0 20 hm5C_associated_SNPs_44537 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43415 DeepMRMD:1;iRNA_m5C:0.999536712157815 43416 chr10 112361863 112361863 1 + A G UCEC 112361869 + 112361849 112361889 41 GTTAGATAGGGGTTACAAATCAATCATGGAACTGATGAATG GTTAGATAGGGGTTGCAAATCAATCATGGAACTGATGAATG < 41bp 1 0.279865455492395 1 0.147938370704651 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC3 ENSG00000108055 CDS Human protein_coding chr10:112361869 chr10:112361863 nonsynonymous SNV 0.949 1 15 hm5C_associated_SNPs_44538 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43416 DeepMRMD:1;iRNA_m5C:0.999536712157815 43417 chr8 143816793 143816793 1 + A G UCEC 143816777 + 143816757 143816797 41 AGCTGCCCGCTGATCTGCAGCACTGGATCTCCTACAACGAG AGCTGCCCGCTGATCTGCAGCACTGGATCTCCTACAGCGAG < 41bp 1 0.276888894839107 1 0.173095285892487 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control THEM6 ENSG00000130193 CDS Human protein_coding chr8:143816777 chr8:143816793 nonsynonymous SNV 0.796 2 37 hm5C_associated_SNPs_44539 0 0 1 0 1 Ribosome 1 0.500231643927118 1 0.999536712145765 hm5C_site_43417 DeepMRMD:1;iRNA_m5C:0.999536712145765 43418 chr16 50813906 50813906 1 + G T UCEC 50813901 + 50813881 50813921 41 CCTCCTTTCTATGGGGTAATCCGTTGGATCGGTCAGCCACC CCTCCTTTCTATGGGGTAATCCGTTTGATCGGTCAGCCACC < 41bp 1 0.286927565504021 1 0.160710781812668 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CYLD ENSG00000083799 CDS Human protein_coding chr16:50813901 chr16:50813906 nonsynonymous SNV 1.000 5 26 hm5C_associated_SNPs_44540 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43418 DeepMRMD:1;iRNA_m5C:0.999536712157815 43419 chr7 104717810 104717810 1 + C G UCEC 104717824 + 104717804 104717844 41 GATGCACTTATCATTGAATACAGAGGGAAGTTTATGCTGAG GATGCAGTTATCATTGAATACAGAGGGAAGTTTATGCTGAG < 41bp 1 0.558179622235683 1 0.772397756576538 experiment 0.883640755528634 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2E ENSG00000005483 CDS Human protein_coding chr7:104717824 chr7:104717810 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_44541 0 0 1 0 1 Cytosol 1 0.500231632616947 0.455204486846924 0.999536734766107 hm5C_site_43419 DeepMRMD:0.455204486846924;iRNA_m5C:0.999536734766107 43420 chr19 42373817 42373817 1 + C G UCEC 42373808 + 42373788 42373828 41 CAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTAAG CAGGGACAAAGAGATCTGGACAGAATCGCGGGACAGGTAAG < 41bp 1 0.588943683029656 1 0.263968706130981 experiment 0.822112633940687 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS19 ENSG00000105372 CDS Human protein_coding chr19:42373808 chr19:42373817 synonymous SNV . 0 30 hm5C_associated_SNPs_44542 0 0 1 0 2 Cytosol 1 0.500231644031403 1 0.999536711937194 hm5C_site_43420 DeepMRMD:1;iRNA_m5C:0.999536711937194 43421 chr11 58379202 58379202 1 + C A UCEC 58379204 + 58379184 58379224 41 TTAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCAAT TTAGAGAGGATGAGGAACATCCAAGGAAGTGAGTAGGCAAT < 41bp 1 0.253704296480342 1 0.418588906526566 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379204 chr11:58379202 nonsynonymous SNV 0.998 3 19 hm5C_associated_SNPs_44544 0 0 1 0 1 chromatin 1 0.500231643921096 1 0.999536712157808 hm5C_site_43421 DeepMRMD:1;iRNA_m5C:0.999536712157808 43422 chr11 58379202 58379202 1 + C A UCEC 58379205 + 58379185 58379225 41 TAGAGAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCAATT TAGAGAGGATGAGGAACATCCAAGGAAGTGAGTAGGCAATT < 41bp 1 0.678510593892549 1 0.468381643295288 experiment 0.642978812214901 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379205 chr11:58379202 nonsynonymous SNV 0.998 3 18 hm5C_associated_SNPs_44545 0 0 1 0 1 chromatin 1 0.500231643923072 1 0.999536712153856 hm5C_site_43422 DeepMRMD:1;iRNA_m5C:0.999536712153856 43423 chr22 31673087 31673087 1 + C A UCEC 31673093 + 31673073 31673113 41 CTGCTGGACAAGATCCGGGCCATGCAGAAGCTGAGCACACC CTGCTGGACAAGATACGGGCCATGCAGAAGCTGAGCACACC < 41bp 1 0.0632283338237268 1 0.0333158075809479 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31673093 chr22:31673087 synonymous SNV . 0 15 hm5C_associated_SNPs_44546 0 0 1 0 0 Cytosol 1 0.500231672224789 1 0.999536655550423 hm5C_site_43423 DeepMRMD:1;iRNA_m5C:0.999536655550423 43424 chr19 9939272 9939272 1 + G A UCEC 9939290 + 9939270 9939310 41 CGGATGATACCATCGGGGACCTTAAGAAGCTGATTGCAGCC CGAATGATACCATCGGGGACCTTAAGAAGCTGATTGCAGCC < 41bp 1 0.419805200738568 1 0.130843073129654 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBL5 ENSG00000198258 CDS Human protein_coding chr19:9939290 chr19:9939272 nonsynonymous SNV 0.975 1 3 hm5C_associated_SNPs_44547 0 0 1 0 2 Ribosome 1 0.500231628906978 1 0.999536742186044 hm5C_site_43424 DeepMRMD:1;iRNA_m5C:0.999536742186044 43425 chr19 49685863 49685863 1 + A T UCEC 49685868 + 49685848 49685888 41 AAGCTTCCCTCATGGACGCCCTGCTGAATGACCGGCCTGAG AAGCTTCCCTCATGGTCGCCCTGCTGAATGACCGGCCTGAG < 41bp 1 0.386898080141795 1 0.168413579463959 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49685868 chr19:49685863 nonsynonymous SNV 0.994 4 16 hm5C_associated_SNPs_44548 0 0 1 0 1 chromatin 1 0.50023166097595 1 0.999536678048101 hm5C_site_43425 DeepMRMD:1;iRNA_m5C:0.999536678048101 43426 chr19 46003765 46003765 1 + C A UCEC 46003772 + 46003752 46003792 41 ACAGTTTTCAGGACTCTGGCCTCAGAGGACATCCCAGATTT ACAGTTTTCAGGAATCTGGCCTCAGAGGACATCCCAGATTT < 41bp 1 0.485981431828785 1 0.241367399692535 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003772 chr19:46003765 nonsynonymous SNV 0.981 0 14 hm5C_associated_SNPs_44549 0 0 0 0 2 nucleolus 1 0.500231643942963 1 0.999536712114074 hm5C_site_43426 DeepMRMD:1;iRNA_m5C:0.999536712114074 43427 chr19 46003765 46003765 1 + C A UCEC 46003784 + 46003764 46003804 41 ACTCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGGGGG AATCTGGCCTCAGAGGACATCCCAGATTTACCTCCTGGGGG < 41bp 1 0.329571730945631 1 0.536294937133789 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003784 chr19:46003765 nonsynonymous SNV 0.981 0 2 hm5C_associated_SNPs_44550 0 0 0 0 2 nucleolus 1 0.500230993026706 0.927410125732422 0.999538013946588 hm5C_site_43427 DeepMRMD:0.927410125732422;iRNA_m5C:0.999538013946588 43428 chr1 162470029 162470029 1 + G T UCEC 162470019 + 162469999 162470039 41 CTCATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCAGGT CTCATTGACTTTGGACTTAGCTTCAAAGAATGCAATCAGGT < 41bp 1 0.376563701615415 1 0.135961204767227 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162470019 chr1:162470029 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_44551 0 0 1 0 1 chromatin 1 0.500231647512303 1 0.999536704975394 hm5C_site_43428 DeepMRMD:1;iRNA_m5C:0.999536704975394 43429 chr5 173380238 173380238 1 + G A UCEC 173380246 + 173380226 173380266 41 CTATCAGTGCCCGCTTTGTTCAGCTGCAGCATGGAGAGATA CTATCAGTGCCCACTTTGTTCAGCTGCAGCATGGAGAGATA < 41bp 1 0.492697852435594 1 0.405221492052078 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173380246 chr5:173380238 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_44552 0 0 1 0 1 Ribosome 1 0.500231893684029 1 0.999536212631943 hm5C_site_43429 DeepMRMD:1;iRNA_m5C:0.999536212631943 43430 chr1 36755112 36755112 1 + A G UCEC 36755116 + 36755096 36755136 41 GGAGTCTTTCCCAGAGAGATCCAAAAAGGAAGATCGGGGCA GGAGTCTTTCCCAGAGGGATCCAAAAAGGAAGATCGGGGCA < 41bp 1 0.407554808584251 1 0.436039626598358 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36755116 chr1:36755112 nonsynonymous SNV 0.994 3 17 hm5C_associated_SNPs_44553 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43430 DeepMRMD:1;iRNA_m5C:0.999536712157815 43431 chr11 122817429 122817429 1 + C T UCEC 122817446 + 122817426 122817466 41 AGCCGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA AGCTGTAGCAATTCTGAAGGCTATCTGTTTCAACTGGAAAA < 41bp 1 0.0991563628215909 1 0.0926916301250458 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817446 chr11:122817429 nonsynonymous SNV 0.435 2 4 hm5C_associated_SNPs_44555 0 0 0 0 1 exosome 1 0.500231643921589 1 0.999536712156821 hm5C_site_43431 DeepMRMD:1;iRNA_m5C:0.999536712156821 43432 chr17 37360836 37360836 1 + C T UCEC 37360816 + 37360796 37360836 41 CAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGC CAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGT < 41bp 1 0.390213321080355 1 0.172549158334732 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360816 chr17:37360836 nonsynonymous SNV 0.998 2 41 hm5C_associated_SNPs_44556 0 0 1 0 1 chromatin 1 0.500231650354245 1 0.999536699291511 hm5C_site_43432 DeepMRMD:1;iRNA_m5C:0.999536699291511 43433 chr17 37360836 37360836 1 + C T UCEC 37360820 + 37360800 37360840 41 TCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGCGCCT TCTAAGACCAAGGAAGCACGCAAGCGCCGTGAAGAGTGCCT < 41bp 1 0.603302867075599 1 0.696558713912964 experiment 0.793394265848801 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360820 chr17:37360836 nonsynonymous SNV 0.998 2 37 hm5C_associated_SNPs_44557 0 0 1 0 1 chromatin 1 0.500231697262528 0.606882572174072 0.999536605474945 hm5C_site_43433 DeepMRMD:0.606882572174072;iRNA_m5C:0.999536605474945 43434 chr17 37360836 37360836 1 + C T UCEC 37360846 + 37360826 37360866 41 CCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCATCA CCGTGAAGAGTGCCTCCAGGCCAAGAAGGAGGAGATCATCA < 41bp 1 0.334872448274561 1 0.252057641744614 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360846 chr17:37360836 nonsynonymous SNV 0.998 2 11 hm5C_associated_SNPs_44558 0 0 1 0 1 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_43434 DeepMRMD:1;iRNA_m5C:0.999536712157815 43435 chr5 179195974 179195974 1 + G A UCEC 179195992 + 179195972 179196012 41 CCGCTGTAATGAAGCAGCATCAGTTGCTTTTGGACCAACAG CCACTGTAATGAAGCAGCATCAGTTGCTTTTGGACCAACAG < 41bp 1 0.0813216598535723 1 0.428129851818085 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MAML1 ENSG00000161021 CDS Human protein_coding chr5:179195992 chr5:179195974 nonsynonymous SNV 0.125 4 3 hm5C_associated_SNPs_44559 0 0 0 0 0 Ribosome 1 0.500231498792657 1 0.999537002414687 hm5C_site_43435 DeepMRMD:1;iRNA_m5C:0.999537002414687 43436 chr1 109804151 109804151 1 + C T UCEC 109804156 + 109804136 109804176 41 TTTGCCACAAAGGAGCGCGACGGGTTGCTGTTGTACAATGG TTTGCCACAAAGGAGTGCGACGGGTTGCTGTTGTACAATGG < 41bp 1 0.275319183160646 1 0.42434698343277 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804156 chr1:109804151 nonsynonymous SNV 0.773 3 16 hm5C_associated_SNPs_44560 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_43436 DeepMRMD:1;iRNA_m5C:0.999536712157815 43437 chr1 206902151 206902151 1 + A T UCEC 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGTATCT < 41bp 1 0.496873128713151 1 0.229875057935715 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902151 nonsynonymous SNV 0.996 3 37 hm5C_associated_SNPs_44561 0 0 1 0 2 Ribosome 1 0.500231385817672 1 0.999537228364657 hm5C_site_43437 DeepMRMD:1;iRNA_m5C:0.999537228364657 43438 chr20 62305418 62305418 1 + G A UCEC 62305411 + 62305391 62305431 41 GGCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCGG GGCAGCGCAGCAGGGTGAGCCCCACCCAGAGTTCAGCGCGG < 41bp 1 0.0797632820334858 1 0.340061366558075 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62305411 chr20:62305418 synonymous SNV . 0 28 hm5C_associated_SNPs_44562 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43438 DeepMRMD:1;iRNA_m5C:0.999536712157815 43439 chr20 62305418 62305418 1 + G A UCEC 62305412 + 62305392 62305432 41 GCAGCGCAGCAGGGTGAGCCCCACCCGGAGTTCAGCGCGGA GCAGCGCAGCAGGGTGAGCCCCACCCAGAGTTCAGCGCGGA < 41bp 1 0.113239580602223 1 0.109229564666748 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62305412 chr20:62305418 synonymous SNV . 0 27 hm5C_associated_SNPs_44563 0 0 1 0 0 chromatin 1 0.500229956681316 1 0.999540086637368 hm5C_site_43439 DeepMRMD:1;iRNA_m5C:0.999540086637368 43440 chr3 33877666 33877666 1 + G A UCEC 33877665 + 33877645 33877685 41 ATGACTTCATTTATCATGATCGAGTTCCAGACCTTAAAGAT ATGACTTCATTTATCATGATCAAGTTCCAGACCTTAAAGAT < 41bp 1 0.389699140685717 1 0.219258785247803 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33877665 chr3:33877666 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_44565 0 0 1 0 1 Nucleus 1 0.500231644476722 1 0.999536711046555 hm5C_site_43440 DeepMRMD:1;iRNA_m5C:0.999536711046555 43441 chr16 20792043 20792043 1 + A G UCEC 20792052 + 20792032 20792072 41 GCAGACATGCCAGTGACAGCCACACCTGTGTGAAGACAAAA GCAGACATGCCGGTGACAGCCACACCTGTGTGAAGACAAAA < 41bp 1 0.346870842451761 1 0.284286081790924 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACSM3;ERI2 ENSG00000005187;ENSG00000196678 CDS Human other chr16:20792052 chr16:20792043 nonsynonymous SNV 0.933 1 12 hm5C_associated_SNPs_44566 0 0 1 0 1 unknown 1 0.500310591290892 1 0.999378817418216 hm5C_site_43441 DeepMRMD:1;iRNA_m5C:0.999378817418216 43442 chr10 89487116 89487116 1 + G T UCEC 89487114 + 89487094 89487134 41 AAGACACGGCTGGAAGGGTGCAGCAAGTTTGTCCTGGCACA AAGACACGGCTGGAAGGGTGCATCAAGTTTGTCCTGGCACA < 41bp 1 0.468227916265246 1 0.188758283853531 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89487114 chr10:89487116 nonsynonymous SNV 0.986 1 23 hm5C_associated_SNPs_44567 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43442 DeepMRMD:1;iRNA_m5C:0.999536712157815 43443 chr4 126412242 126412242 1 + T A UCEC 126412244 + 126412224 126412264 41 GGGAAGGAGAAGCAAGAGTCCTCAGGCCATGGCATCACATG GGGAAGGAGAAGCAAGAGACCTCAGGCCATGGCATCACATG < 41bp 1 0.285880159683237 1 0.471988558769226 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126412244 chr4:126412242 nonsynonymous SNV 0.987 2 19 hm5C_associated_SNPs_44568 0 0 0 0 0 Endoplasmic reticulum 1 0.500231644654722 1 0.999536710690556 hm5C_site_43443 DeepMRMD:1;iRNA_m5C:0.999536710690556 43444 chr7 73922429 73922429 1 + C T UCEC 73922440 + 73922420 73922460 41 CTGGGTAAGCGCTGTGACGTCCCCACCAACGGCTGCGGACC CTGGGTAAGTGCTGTGACGTCCCCACCAACGGCTGCGGACC < 41bp 1 0.577902504473224 1 0.39321357011795 experiment 0.844194991053552 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73922440 chr7:73922429 nonsynonymous SNV 0.999 2 10 hm5C_associated_SNPs_44569 0 0 1 0 1 Nucleus 1 0.500231647148372 1 0.999536705703255 hm5C_site_43444 DeepMRMD:1;iRNA_m5C:0.999536705703255 43445 chr1 11898614 11898614 1 + C A UCEC 11898626 + 11898606 11898646 41 CATGAACCCTTCGCCTTTCACCGTCTCGCCCAACACCCACG CATGAACCATTCGCCTTTCACCGTCTCGCCCAACACCCACG < 41bp 1 0.117445458862279 1 0.0507520735263824 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11898626 chr1:11898614 nonsynonymous SNV 0.944 4 9 hm5C_associated_SNPs_44570 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921034 1 0.999536712157933 hm5C_site_43445 DeepMRMD:1;iRNA_m5C:0.999536712157933 43446 chr2 74687007 74687007 1 + G T UCEC 74687004 + 74686984 74687024 41 TCCTTGCCTCTTGCAGGGTTCTGGCTGCTCTGGACTGTCCT TCCTTGCCTCTTGCAGGGTTCTGTCTGCTCTGGACTGTCCT < 41bp 1 0.0881902094195167 1 0.0698177814483643 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control WBP1 ENSG00000239779 CDS Human protein_coding chr2:74687004 chr2:74687007 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_44571 0 0 0 0 0 cytosol 1 0.500231643921076 1 0.999536712157848 hm5C_site_43446 DeepMRMD:1;iRNA_m5C:0.999536712157848 43447 chr6 158870094 158870094 1 + G A UCEC 158870090 + 158870070 158870110 41 TGCCACGGCAGAATGCTGGCCCACGTCCTCTTGCACGAGTC TGCCACGGCAGAATGCTGGCCCACATCCTCTTGCACGAGTC < 41bp 1 0.217944845044838 1 0.11327999830246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TULP4 ENSG00000130338 CDS Human protein_coding chr6:158870090 chr6:158870094 nonsynonymous SNV 0.904 1 25 hm5C_associated_SNPs_44572 0 0 0 0 1 Ribosome 1 0.50023184327697 1 0.999536313446059 hm5C_site_43447 DeepMRMD:1;iRNA_m5C:0.999536313446059 43448 chr10 101715524 101715524 1 + C A UCEC 101715533 - 101715513 101715553 41 GAGAAGAGCTTGGCAGGGCCCGGCACAGAGCCAGATAAAAT GAGAAGAGCTTGGCAGGGCCCGGCACAGATCCAGATAAAAT < 41bp 1 0.534865812723899 1 0.601246774196625 experiment 0.930268374552203 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNMBP ENSG00000107554 CDS Human protein_coding chr10:101715533 chr10:101715524 nonsynonymous SNV 0.148 0 30 hm5C_associated_SNPs_44573 0 0 0 0 0 Nucleus 1 0.500231643921759 0.79750645160675 0.999536712156482 hm5C_site_43448 DeepMRMD:0.79750645160675;iRNA_m5C:0.999536712156482 43449 chr19 49376811 49376811 1 + C A UCEC 49376803 + 49376783 49376823 41 TGAAAACCAGCAGTTCCCTTCCTGAAGCCTGGGGACTTTTG TGAAAACCAGCAGTTCCCTTCCTGAAGCATGGGGACTTTTG < 41bp 1 0.180148276462653 1 0.126428514719009 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49376803 chr19:49376811 synonymous SNV . 0 29 hm5C_associated_SNPs_44574 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43449 DeepMRMD:1;iRNA_m5C:0.999536712157815 43450 chr5 112868666 112868666 1 + G A UCEC 112868682 + 112868662 112868702 41 CGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA CGCTATGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGA < 41bp 1 0.515136541814762 1 0.13521534204483 experiment 0.969726916370477 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868682 chr5:112868666 nonsynonymous SNV 0.998 3 5 hm5C_associated_SNPs_44575 0 0 1 0 2 Cytosol 1 0.500231512451842 1 0.999536975096317 hm5C_site_43450 DeepMRMD:1;iRNA_m5C:0.999536975096317 43451 chr5 112868666 112868666 1 + G A UCEC 112868683 + 112868663 112868703 41 GCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT GCTATGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGGAT < 41bp 1 0.613875543246443 1 0.748012959957123 experiment 0.772248913507114 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868683 chr5:112868666 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_44576 0 0 1 0 2 Cytosol 1 0.500231645746429 0.503974080085754 0.999536708507142 hm5C_site_43451 DeepMRMD:0.503974080085754;iRNA_m5C:0.999536708507142 43452 chr14 97014145 97014145 1 + G A UCEC 97014156 + 97014136 97014176 41 TATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGATAT TATAGGCAAACAATAAACAGCAAGATGTTTGAGGTGGATAT < 41bp 1 0.501962733840903 1 0.197345346212387 experiment 0.996074532318194 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PAPOLA ENSG00000090060 CDS Human protein_coding chr14:97014156 chr14:97014145 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_44577 0 0 1 0 1 Ribosome 1 0.500228842353879 1 0.999542315292243 hm5C_site_43452 DeepMRMD:1;iRNA_m5C:0.999542315292243 43453 chr13 111164403 111164403 1 + C T UCEC 111164391 + 111164371 111164411 41 TGCAATGGAGGCCGCGGCACCTGCCACTACTACGCCAACAA TGCAATGGAGGCCGCGGCACCTGCCACTACTATGCCAACAA < 41bp 1 0.213712439025841 1 0.411722809076309 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111164391 chr13:111164403 synonymous SNV . 0 33 hm5C_associated_SNPs_44578 0 0 1 0 0 Cytosol 1 0.500231643947487 1 0.999536712105025 hm5C_site_43453 DeepMRMD:1;iRNA_m5C:0.999536712105025 43454 chr22 26299786 26299786 1 + G T UCEC 26299787 + 26299767 26299807 41 AGCAGGAAAACACCATCAAGCAGCTGGAGCAGGTAGGAAAG AGCAGGAAAACACCATCAATCAGCTGGAGCAGGTAGGAAAG < 41bp 1 0.442857238913105 1 0.901329576969147 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26299787 chr22:26299786 nonsynonymous SNV 0.997 3 20 hm5C_associated_SNPs_44579 0 0 1 0 1 chromatin 1 0.500231643921048 0.197340846061706 0.999536712157904 hm5C_site_43454 DeepMRMD:0.197340846061706;iRNA_m5C:0.999536712157904 43455 chr1 155058969 155058969 1 + C T UCEC 155058986 + 155058966 155059006 41 CTGCCCCTGGCCGTGGGCATCGCCTTCTTCCTCATGACGTT CTGTCCCTGGCCGTGGGCATCGCCTTCTTCCTCATGACGTT < 41bp 1 0.532150830139764 1 0.34879195690155 experiment 0.935698339720472 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EFNA3 ENSG00000143590;ENSG00000251246 CDS Human other chr1:155058986 chr1:155058969 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_44580 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157816 hm5C_site_43455 DeepMRMD:1;iRNA_m5C:0.999536712157816 43456 chr11 118452208 118452208 1 + G T UCEC 118452203 + 118452183 118452223 41 ATTTTAGAAGATTTGGAGACCCTAAGGCTCTTCTCAAGAGT ATTTTAGAAGATTTGGAGACCCTAATGCTCTTCTCAAGAGT < 41bp 1 0.18176100642976 1 0.0696074366569519 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARCN1 ENSG00000095139 CDS Human protein_coding chr11:118452203 chr11:118452208 nonsynonymous SNV 0.777 4 26 hm5C_associated_SNPs_44581 0 0 1 0 1 Cytosol 1 0.500231643900822 1 0.999536712198355 hm5C_site_43456 DeepMRMD:1;iRNA_m5C:0.999536712198355 43457 chr7 100485933 100485933 1 + G A UCEC 100485923 + 100485903 100485943 41 CACAGGAGGCCCTCCATACCCCCATGCCCCGTATGGTGCTG CACAGGAGGCCCTCCATACCCCCATGCCCCATATGGTGCTG < 41bp 1 0.434653768466091 1 0.191416263580322 experiment 1 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100485923 chr7:100485933 synonymous SNV . 0 31 hm5C_associated_SNPs_44582 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43457 DeepMRMD:1;iRNA_m5C:0.999536712157815 43458 chr17 16329458 16329458 1 + C A UCEC 16329457 + 16329437 16329477 41 GAGTTTTCAGGACTGAGCCACCTTTCCCGAAAGTTCACCGA GAGTTTTCAGGACTGAGCCACATTTCCCGAAAGTTCACCGA < 41bp 1 0.0256686226205712 1 0.0588530600070953 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329457 chr17:16329458 nonsynonymous SNV 0.571 5 22 hm5C_associated_SNPs_44583 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920359 1 0.999536712159282 hm5C_site_43458 DeepMRMD:1;iRNA_m5C:0.999536712159282 43459 chr7 158734637 158734637 1 + A C UCEC 158734618 + 158734598 158734638 41 CTTTCTTCCTGGTCATAGGCCGGCTGTTCGGACGGAAGCAT CTTTCTTCCTGGTCATAGGCCGGCTGTTCGGACGGAAGCCT < 41bp 1 0.46680294925377 1 0.440789401531219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR60 ENSG00000126870 CDS Human protein_coding chr7:158734618 chr7:158734637 nonsynonymous SNV 0.041 0 40 hm5C_associated_SNPs_44584 0 0 1 0 1 Nucleus 1 0.500231671904325 1 0.99953665619135 hm5C_site_43459 DeepMRMD:1;iRNA_m5C:0.99953665619135 43460 chr21 45546835 45546835 1 + T A UCEC 45546824 + 45546804 45546844 41 AAACCTGAGATCAGGGTGACCTCACTCCGCTTCTCTCCCAC AAACCTGAGATCAGGGTGACCTCACTCCGCTACTCTCCCAC < 41bp 1 0.368008040592 1 0.289590179920197 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PWP2 ENSG00000241945 CDS Human protein_coding chr21:45546824 chr21:45546835 nonsynonymous SNV 0.934 4 32 hm5C_associated_SNPs_44585 0 0 1 0 2 Nucleus 1 0.500231643444296 1 0.999536713111408 hm5C_site_43460 DeepMRMD:1;iRNA_m5C:0.999536713111408 43461 chr14 23777260 23777260 1 + G A UCEC 23777246 + 23777226 23777266 41 GATGAACTTTTTCAAGGGGGCCCCAACTGGGGCCGCCTTGT GATGAACTTTTTCAAGGGGGCCCCAACTGGGGCCACCTTGT < 41bp 1 0.344017552774045 1 0.186754643917084 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL2L2;BCL2L2-PABPN1 ENSG00000129473;ENSG00000258643 CDS Human other chr14:23777246 chr14:23777260 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_44586 0 0 1 0 0 unknown 1 0.500231643844184 1 0.999536712311632 hm5C_site_43461 DeepMRMD:1;iRNA_m5C:0.999536712311632 43462 chr14 23777260 23777260 1 + G A UCEC 23777247 + 23777227 23777267 41 ATGAACTTTTTCAAGGGGGCCCCAACTGGGGCCGCCTTGTA ATGAACTTTTTCAAGGGGGCCCCAACTGGGGCCACCTTGTA < 41bp 1 0.268435920806574 1 0.128588140010834 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL2L2;BCL2L2-PABPN1 ENSG00000129473;ENSG00000258643 CDS Human other chr14:23777247 chr14:23777260 nonsynonymous SNV 0.998 2 34 hm5C_associated_SNPs_44587 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_43462 DeepMRMD:1;iRNA_m5C:0.999536712157815 43463 chr14 23777260 23777260 1 + G A UCEC 23777248 + 23777228 23777268 41 TGAACTTTTTCAAGGGGGCCCCAACTGGGGCCGCCTTGTAG TGAACTTTTTCAAGGGGGCCCCAACTGGGGCCACCTTGTAG < 41bp 1 0.0630062811694278 1 0.19195494055748 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL2L2;BCL2L2-PABPN1 ENSG00000129473;ENSG00000258643 CDS Human other chr14:23777248 chr14:23777260 nonsynonymous SNV 0.998 2 33 hm5C_associated_SNPs_44588 0 0 1 0 0 unknown 1 0.500231643921079 1 0.999536712157843 hm5C_site_43463 DeepMRMD:1;iRNA_m5C:0.999536712157843 43464 chr14 23777260 23777260 1 + G A UCEC 23777249 + 23777229 23777269 41 GAACTTTTTCAAGGGGGCCCCAACTGGGGCCGCCTTGTAGC GAACTTTTTCAAGGGGGCCCCAACTGGGGCCACCTTGTAGC < 41bp 1 0.416815516644993 1 0.309156596660614 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL2L2;BCL2L2-PABPN1 ENSG00000129473;ENSG00000258643 CDS Human other chr14:23777249 chr14:23777260 nonsynonymous SNV 0.998 2 32 hm5C_associated_SNPs_44589 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_43464 DeepMRMD:1;iRNA_m5C:0.999536712157815 43465 chr14 23777260 23777260 1 + G A UCEC 23777258 + 23777238 23777278 41 CAAGGGGGCCCCAACTGGGGCCGCCTTGTAGCCTTCTTTGT CAAGGGGGCCCCAACTGGGGCCACCTTGTAGCCTTCTTTGT < 41bp 1 0.0700815100479243 1 0.0539668798446655 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control BCL2L2;BCL2L2-PABPN1 ENSG00000129473;ENSG00000258643 CDS Human other chr14:23777258 chr14:23777260 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_44590 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_43465 DeepMRMD:1;iRNA_m5C:0.999536712157815 43466 chr11 34129833 34129833 1 + C T UCEC 34129843 + 34129823 34129863 41 AGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGG AGTAGCTGAGTGGCAAAGATCTCTCTTTGTTGTAGTTGGGG < 41bp 1 0.200495950081751 1 0.0508868992328644 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129843 chr11:34129833 nonsynonymous SNV 0.993 2 11 hm5C_associated_SNPs_44591 0 0 1 0 2 chromatin 1 0.500231644503383 1 0.999536710993234 hm5C_site_43466 DeepMRMD:1;iRNA_m5C:0.999536710993234 43467 chr15 83502175 83502175 1 + C T UCEC 83502180 + 83502160 83502200 41 CCAACCAGCAACAGACGCACCAGTGACCTTGAGAGGAGCAT CCAACCAGCAACAGATGCACCAGTGACCTTGAGAGGAGCAT < 41bp 1 0.262299976373268 1 0.24839922785759 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control WHAMM ENSG00000156232 CDS Human protein_coding chr15:83502180 chr15:83502175 nonsynonymous SNV 0.010 0 16 hm5C_associated_SNPs_44592 0 0 1 0 0 Nucleus 1 0.500231643921944 1 0.999536712156113 hm5C_site_43467 DeepMRMD:1;iRNA_m5C:0.999536712156113 43468 chr5 5457688 5457688 1 + G A UCEC 5457687 + 5457667 5457707 41 AGGTTTTAGTACAAAGTCATCGTGACGGTGGTAGTACTGAA AGGTTTTAGTACAAAGTCATCATGACGGTGGTAGTACTGAA < 41bp 1 0.34581699007527 1 0.102421581745148 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ICE1 ENSG00000164151 CDS Human protein_coding chr5:5457687 chr5:5457688 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_44593 0 0 1 0 0 Nucleus 1 0.500231643920821 1 0.999536712158358 hm5C_site_43468 DeepMRMD:1;iRNA_m5C:0.999536712158358 43469 chr15 43820902 43820902 1 + C T UCEC 43820897 + 43820877 43820917 41 GCCTGACACATTGCTCTCCCCTGAGCAGCCAGTGTGTCCTG GCCTGACACATTGCTCTCCCCTGAGTAGCCAGTGTGTCCTG < 41bp 1 0.633360502362009 1 0.724797368049622 experiment 0.733278995275981 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAP1A ENSG00000166963 CDS Human protein_coding chr15:43820897 chr15:43820902 stopgain 0.995 0 26 hm5C_associated_SNPs_44594 0 0 0 0 0 nucleolus 1 0.500231645712029 0.550405263900756 0.999536708575943 hm5C_site_43469 DeepMRMD:0.550405263900756;iRNA_m5C:0.999536708575943 43470 chr18 74631824 74631824 1 + G A UCEC 74631822 + 74631802 74631842 41 CACTTTCACGGAGGAGGAGACAGCCCAGTTAGCCAAGATCC CACTTTCACGGAGGAGGAGACAACCCAGTTAGCCAAGATCC < 41bp 1 0.226355643807061 1 0.138303369283676 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74631822 chr18:74631824 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_44595 0 0 1 0 1 Cytosol 1 0.500231643434366 1 0.999536713131268 hm5C_site_43470 DeepMRMD:1;iRNA_m5C:0.999536713131268 43471 chr9 131455936 131455936 1 + G T UCEC 131455929 + 131455909 131455949 41 TCATTTAGGATTTGACGAAACGTTCGAGTCAAACGCAGAAT TCATTTAGGATTTGACGAAACGTTCGATTCAAACGCAGAAT < 41bp 1 0.104012404225048 1 0.107626855373383 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SET ENSG00000119335 CDS Human protein_coding chr9:131455929 chr9:131455936 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_44596 0 0 1 0 1 Ribosome 1 0.50023164375232 1 0.999536712495359 hm5C_site_43471 DeepMRMD:1;iRNA_m5C:0.999536712495359 43472 chr15 86278373 86278373 1 + C A UCEC 86278359 + 86278339 86278379 41 ACCTTTGGAGGATTTGACAGCCATCAGATGAATGCTTCAAA ACCTTTGGAGGATTTGACAGCCATCAGATGAATGATTCAAA < 41bp 1 0.00924573211858853 1 0.413622111082077 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AKAP13 ENSG00000170776 CDS Human protein_coding chr15:86278359 chr15:86278373 nonsynonymous SNV 0.998 2 35 hm5C_associated_SNPs_44598 0 0 1 0 1 Ribosome 1 0.500231644238877 1 0.999536711522245 hm5C_site_43472 DeepMRMD:1;iRNA_m5C:0.999536711522245 43473 chr7 66489945 66489945 1 + G T UCEC 66489938 + 66489918 66489958 41 AAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATT AAGAGTTTGGTGGTGAGGACCATCAGATCCTAAATTCCATT < 41bp 1 0.375959296575899 1 0.182508558034897 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYW1 ENSG00000198874 CDS Human protein_coding chr7:66489938 chr7:66489945 nonsynonymous SNV 0.057 0 28 hm5C_associated_SNPs_44599 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644312403 1 0.999536711375195 hm5C_site_43473 DeepMRMD:1;iRNA_m5C:0.999536711375195 43474 chr1 235600762 235600762 1 + C A UCEC 235600742 + 235600722 235600762 41 AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGC AAGCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGA < 41bp 1 0.565993657329114 1 0.074709564447403 experiment 0.868012685341772 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TBCE ENSG00000116957 CDS Human protein_coding chr1:235600742 chr1:235600762 synonymous SNV . 0 41 hm5C_associated_SNPs_44600 0 0 1 0 0 chromatin 1 0.500231635764609 1 0.999536728470781 hm5C_site_43474 DeepMRMD:1;iRNA_m5C:0.999536728470781 43475 chr4 166418679 166418679 1 + G T UCEC 166418676 + 166418656 166418696 41 TCTTTTAGGTTGATTTTGAACTGGAGTCATTTTCTGAAAGG TCTTTTAGGTTGATTTTGAACTGTAGTCATTTTCTGAAAGG < 41bp 1 0.550368966323952 1 0.0668288767337799 experiment 0.899262067352096 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CPE ENSG00000109472 CDS Human protein_coding chr4:166418676 chr4:166418679 stopgain 0.999 1 24 hm5C_associated_SNPs_44601 0 0 1 0 1 Ribosome 1 0.500223251637401 1 0.999553496725198 hm5C_site_43475 DeepMRMD:1;iRNA_m5C:0.999553496725198 43476 chr10 103827279 103827279 1 + G T UCEC 103827278 + 103827258 103827298 41 CCGAGTTTGCCCAGCACCGCCGGCTTGATGCTCACCTCCCC CCGAGTTTGCCCAGCACCGCCTGCTTGATGCTCACCTCCCC < 41bp 1 0.489202604231125 1 0.160460591316223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HPS6 ENSG00000166189 CDS Human protein_coding chr10:103827278 chr10:103827279 nonsynonymous SNV 0.336 0 22 hm5C_associated_SNPs_44603 0 0 1 0 0 Ribosome 1 0.500231657093121 1 0.999536685813758 hm5C_site_43476 DeepMRMD:1;iRNA_m5C:0.999536685813758 43477 chr20 61575032 61575032 1 + G A UCEC 61575018 + 61574998 61575038 41 AGGAGTCGCCCTTCGGAGACCTCCTCCACACCATGCAGAGG AGGAGTCGCCCTTCGGAGACCTCCTCCACACCATACAGAGG < 41bp 1 0.426572724203291 1 0.350594997406006 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GID8 ENSG00000101193 CDS Human protein_coding chr20:61575018 chr20:61575032 nonsynonymous SNV 0.995 2 35 hm5C_associated_SNPs_44604 0 0 1 0 1 Ribosome 1 0.500231648110874 1 0.999536703778253 hm5C_site_43477 DeepMRMD:1;iRNA_m5C:0.999536703778253 43478 chr2 176988304 176988304 1 + C A UCEC 176988301 + 176988281 176988321 41 ATTCGCAGCCGCAGCAGCAGCAACTTGACCCAAGTAAGTGC ATTCGCAGCCGCAGCAGCAGCAAATTGACCCAAGTAAGTGC < 41bp 1 0.200439748847638 1 0.120126783847809 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176988301 chr2:176988304 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_44605 0 0 0 0 1 Endoplasmic reticulum 1 0.500232141084338 1 0.999535717831324 hm5C_site_43478 DeepMRMD:1;iRNA_m5C:0.999535717831324 43479 chr1 150297422 150297422 1 + C A UCEC 150297437 + 150297417 150297457 41 GGGAGCTGGATGAGCTGAAACCATGGATAGAGAAGACAGTG GGGAGATGGATGAGCTGAAACCATGGATAGAGAAGACAGTG < 41bp 1 0.372992837260209 1 0.148348689079285 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150297437 chr1:150297422 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_44606 0 0 1 0 2 Nucleus 1 0.500231641481765 1 0.99953671703647 hm5C_site_43479 DeepMRMD:1;iRNA_m5C:0.99953671703647 43480 chr8 102381124 102381124 1 + G A UCEC 102381132 + 102381112 102381152 41 TCTTGATTCCACGTTCCCTCCACAAAATGCCTGGCGAAGCC TCTTGATTCCACATTCCCTCCACAAAATGCCTGGCGAAGCC < 41bp 1 0.644077432376277 1 0.317757427692413 experiment 0.711845135247446 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NACAP1 ENSG00000228224 ncRNA_exonic Human transcribed_processed_pseudogene chr8:102381132 chr8:102381124 . . 0 13 hm5C_associated_SNPs_44607 0 0 0 0 0 unknown 1 0.50023164390304 1 0.999536712193921 hm5C_site_43480 DeepMRMD:1;iRNA_m5C:0.999536712193921 43481 chr11 35250855 35250855 1 + A C UCEC 35250851 + 35250831 35250871 41 CTGATGAGACAAGGAACCTGCAGAATGTGGACATGAAGATT CTGATGAGACAAGGAACCTGCAGACTGTGGACATGAAGATT < 41bp 1 0.237915183819352 1 0.202997744083405 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35250851 chr11:35250855 nonsynonymous SNV 0.946 3 25 hm5C_associated_SNPs_44608 0 0 1 1 0 Nucleus 1 0.500231643921061 1 0.999536712157877 hm5C_site_43481 DeepMRMD:1;iRNA_m5C:0.999536712157877 43482 chr2 219269109 219269109 1 + C T UCEC 219269106 + 219269086 219269126 41 GAGCAACTCAGCCGTGTGGACGACGTGTACTCAGTGCTCAG GAGCAACTCAGCCGTGTGGACGATGTGTACTCAGTGCTCAG < 41bp 1 0.39487924379764 1 0.168721973896027 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219269106 chr2:219269109 synonymous SNV . 0 24 hm5C_associated_SNPs_44609 0 0 1 0 1 Cytosol 1 0.500231667044316 1 0.999536665911368 hm5C_site_43482 DeepMRMD:1;iRNA_m5C:0.999536665911368 43483 chr3 184038426 184038426 1 + T C UCEC 184038413 + 184038393 184038433 41 TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCGAGATC TCATCTTATAGCTTTCTTTCCCCAGATCCGAATCCGAGATC < 41bp 1 0.148336669076492 1 0.404697358608246 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184038413 chr3:184038426 synonymous SNV . 0 34 hm5C_associated_SNPs_44611 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43483 DeepMRMD:1;iRNA_m5C:0.999536712157815 43484 chrX 103434400 103434400 1 + G A UCEC 103434382 + 103434362 103434402 41 GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAGGTG GGAAGGAGAGGCTCAGTGGGCTCTTCCTTAACGAAGAGATG < 41bp 1 0.252870825966991 1 0.0963623821735382 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM199X ENSG00000123575 CDS Human protein_coding chrX:103434382 chrX:103434400 nonsynonymous SNV 0.995 4 39 hm5C_associated_SNPs_44612 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43484 DeepMRMD:1;iRNA_m5C:0.999536712157815 43485 chr10 94822661 94822661 1 + C T UCEC 94822648 + 94822628 94822668 41 CGCGCATCCTGCTGGGGTTGCGGCTGGACGAGGCGCAGTGC CGCGCATCCTGCTGGGGTTGCGGCTGGACGAGGTGCAGTGC < 41bp 1 0.686866724939426 1 0.458097666501999 experiment 0.626266550121147 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94822648 chr10:94822661 nonsynonymous SNV 0.467 0 34 hm5C_associated_SNPs_44613 0 0 0 0 1 exosome 1 0.500231653999936 1 0.999536692000129 hm5C_site_43485 DeepMRMD:1;iRNA_m5C:0.999536692000129 43486 chr2 32640615 32640615 1 + C T UCEC 32640607 + 32640587 32640627 41 TTCATTTGTTGGTAGGACTGCGGACATGCCCTGTTGAATCC TTCATTTGTTGGTAGGACTGCGGACATGTCCTGTTGAATCC < 41bp 1 0.114412683002135 1 0.383665710687637 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BIRC6 ENSG00000115760 CDS Human protein_coding chr2:32640607 chr2:32640615 synonymous SNV . 0 29 hm5C_associated_SNPs_44615 0 0 1 0 0 Nucleus 1 0.500231643902964 1 0.999536712194071 hm5C_site_43486 DeepMRMD:1;iRNA_m5C:0.999536712194071 Systemic lupus erythematosus 43487 chr1 161332228 161332228 1 + A C UCEC 161332236 + 161332216 161332256 41 CCATGTGAAGAAAGGAGGCTCCCAGCATCATCTTCCTACAC CCATGTGAAGAACGGAGGCTCCCAGCATCATCTTCCTACAC < 41bp 1 0.392159236048027 1 0.0597136616706848 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SDHC ENSG00000143252 CDS Human protein_coding chr1:161332236 chr1:161332228 nonsynonymous SNV 0.397 1 13 hm5C_associated_SNPs_44616 0 0 0 0 0 Ribosome 1 0.500231643930525 1 0.99953671213895 hm5C_site_43487 DeepMRMD:1;iRNA_m5C:0.99953671213895 43488 chr2 27662640 27662640 1 + T A UCEC 27662638 + 27662618 27662658 41 TGTTTCCTTTTCTAGGAGTTCATTCAAAAGTGCCTGCAGTC TGTTTCCTTTTCTAGGAGTTCAATCAAAAGTGCCTGCAGTC < 41bp 1 0.120338524137971 1 0.42230162024498 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27662638 chr2:27662640 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_44617 0 0 1 0 1 Cytosol 1 0.500228911371477 1 0.999542177257046 hm5C_site_43488 DeepMRMD:1;iRNA_m5C:0.999542177257046 43489 chr6 31516056 31516056 1 + C T UCEC 31516048 + 31516028 31516068 41 CCCAGGCCCTCCTCCAGCGACACCCAGGCCTCGATGTAGAT CCCAGGCCCTCCTCCAGCGACACCCAGGTCTCGATGTAGAT < 41bp 1 0.300262216776274 1 0.0196509063243866 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NFKBIL1 ENSG00000204498;ENSG00000213760 CDS Human other chr6:31516048 chr6:31516056 nonsynonymous SNV 0.997 1 29 hm5C_associated_SNPs_44618 0 0 1 0 0 cytosol 1 0.500231643914615 1 0.999536712170769 hm5C_site_43489 DeepMRMD:1;iRNA_m5C:0.999536712170769 43490 chr7 129064961 129064961 1 + T C UCEC 129064943 + 129064923 129064963 41 TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCTAC TTTACAATGCTCCTGAGGGTCGCTATAAGCAGGATGTCCAC < 41bp 1 0.634384574697633 1 0.614601135253906 experiment 0.731230850604734 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129064943 chr7:129064961 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_44620 0 0 0 0 2 chromatin 1 0.50023164392127 0.770797729492188 0.99953671215746 hm5C_site_43490 DeepMRMD:0.770797729492188;iRNA_m5C:0.99953671215746 43491 chr1 145761289 145761289 1 + A G UCEC 145761280 + 145761260 145761300 41 CTTCTCTGGAAGTCTCAAGTCCACCAGATACTACAGAGGAA CTTCTCTGGAAGTCTCAAGTCCACCAGATGCTACAGAGGAA < 41bp 1 0.0662709069711581 1 0.152488440275192 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDZK1 ENSG00000174827 CDS Human protein_coding chr1:145761280 chr1:145761289 nonsynonymous SNV . 0 30 hm5C_associated_SNPs_44621 0 0 1 0 0 Nucleus 1 0.500231644224892 1 0.999536711550217 hm5C_site_43491 DeepMRMD:1;iRNA_m5C:0.999536711550217 43492 chr13 114292034 114292034 1 + C A UCEC 114292033 + 114292013 114292053 41 ATATCCGGAAGCTTCTACAGCCGTCTGTCCTGTGGAACTGC ATATCCGGAAGCTTCTACAGCAGTCTGTCCTGTGGAACTGC < 41bp 1 0.193983104604989 1 0.0467501282691956 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114292033 chr13:114292034 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_44622 0 0 1 0 1 Cytosol 1 0.500231643921095 1 0.999536712157809 hm5C_site_43492 DeepMRMD:1;iRNA_m5C:0.999536712157809 43493 chr9 133760748 133760748 1 + G A UCEC 133760729 + 133760709 133760749 41 CTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGATCGCCAGC CTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGATCGCCAAC < 41bp 1 0.0136002968192734 1 0.11406597495079 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760729 chr9:133760748 nonsynonymous SNV 0.159 1 40 hm5C_associated_SNPs_44624 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644002292 1 0.999536711995416 hm5C_site_43493 DeepMRMD:1;iRNA_m5C:0.999536711995416 43494 chr19 12924190 12924190 1 + C A UCEC 12924210 + 12924190 12924230 41 CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT ATACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT < 41bp 1 0.342444562091138 1 0.0822468996047974 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924210 chr19:12924190 synonymous SNV . 0 1 hm5C_associated_SNPs_44625 0 0 1 0 1 Ribosome 1 0.500231643921224 1 0.999536712157551 hm5C_site_43494 DeepMRMD:1;iRNA_m5C:0.999536712157551 43495 chr11 61507977 61507977 1 + C T UCEC 61507980 + 61507960 61508000 41 TACTTTGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT TACTTTGCCATCTGGGGTGACAACAAGGCCTTCAATGAGGT < 41bp 1 0.246938903893953 1 0.348295032978058 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507980 chr11:61507977 synonymous SNV . 0 18 hm5C_associated_SNPs_44626 0 0 1 0 2 Endoplasmic reticulum 1 0.500234367932084 1 0.999531264135832 hm5C_site_43495 DeepMRMD:1;iRNA_m5C:0.999531264135832 43496 chr1 145584504 145584504 1 + C T UCEC 145584485 + 145584465 145584505 41 CTCCTCTCTACCCACAGAGTCCTGACATCTGGCCACCAGCC CTCCTCTCTACCCACAGAGTCCTGACATCTGGCCACCAGTC < 41bp 1 0.0958166581617989 1 0.0388613939285278 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PIAS3 ENSG00000131788 CDS Human protein_coding chr1:145584485 chr1:145584504 nonsynonymous SNV . 0 40 hm5C_associated_SNPs_44627 0 0 0 0 0 chromatin 1 0.500231643555057 1 0.999536712889885 hm5C_site_43496 DeepMRMD:1;iRNA_m5C:0.999536712889885 43497 chr1 26136182 26136182 1 + C T UCEC 26136177 + 26136157 26136197 41 GATCCCCTTCCCCACAGGATCCATGCCGAGTTCCAGCTCAG GATCCCCTTCCCCACAGGATCCATGTCGAGTTCCAGCTCAG < 41bp 1 0.134527134850672 1 0.0310828983783722 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136177 chr1:26136182 nonsynonymous SNV 0.871 5 26 hm5C_associated_SNPs_44628 0 0 1 0 1 unknown 1 0.500216667159846 1 0.999566665680307 hm5C_site_43497 DeepMRMD:1;iRNA_m5C:0.999566665680307 43498 chr8 21958387 21958387 1 + G T UCEC 21958371 + 21958351 21958391 41 ACAGAGACCTGGAGGAAGACCCCTACTTCACCGACAGCTTC ACAGAGACCTGGAGGAAGACCCCTACTTCACCGACATCTTC < 41bp 1 0.150189807936035 1 0.0463263988494873 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21958371 chr8:21958387 nonsynonymous SNV 0.440 0 37 hm5C_associated_SNPs_44629 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_43498 DeepMRMD:1;iRNA_m5C:0.999536712157815 43499 chr1 22332025 22332025 1 + G A UCEC 22332005 + 22331985 22332025 41 GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGG GGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGA < 41bp 1 0.370941409690478 1 0.397291600704193 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332005 chr1:22332025 nonsynonymous SNV 0.649 3 41 hm5C_associated_SNPs_44631 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644044741 1 0.999536711910519 hm5C_site_43499 DeepMRMD:1;iRNA_m5C:0.999536711910519 43500 chr1 22332025 22332025 1 + G A UCEC 22332019 + 22331999 22332039 41 CGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGT CGCCCCCGATTGGGTTGTGACTGCCGACCACTGCATCTCGT < 41bp 1 0.620432299703375 1 0.387043356895447 experiment 0.759135400593249 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332019 chr1:22332025 nonsynonymous SNV 0.649 3 27 hm5C_associated_SNPs_44632 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164541045 1 0.9995367091791 hm5C_site_43500 DeepMRMD:1;iRNA_m5C:0.9995367091791 43501 chr1 22332025 22332025 1 + G A UCEC 22332022 + 22332002 22332042 41 CCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAG CCCCGATTGGGTTGTGACTGCCGACCACTGCATCTCGTGAG < 41bp 1 0.217160756877202 1 0.40448534488678 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332022 chr1:22332025 nonsynonymous SNV 0.649 3 24 hm5C_associated_SNPs_44633 0 0 0 0 2 Endoplasmic reticulum 1 0.500231646826331 1 0.999536706347338 hm5C_site_43501 DeepMRMD:1;iRNA_m5C:0.999536706347338 43502 chr1 22332025 22332025 1 + G A UCEC 22332023 + 22332003 22332043 41 CCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGT CCCGATTGGGTTGTGACTGCCGACCACTGCATCTCGTGAGT < 41bp 1 0.338184259890968 1 0.200772702693939 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332023 chr1:22332025 nonsynonymous SNV 0.649 3 23 hm5C_associated_SNPs_44634 0 0 0 0 2 Endoplasmic reticulum 1 0.500225701986508 1 0.999548596026985 hm5C_site_43502 DeepMRMD:1;iRNA_m5C:0.999548596026985 43503 chr1 22332025 22332025 1 + G A UCEC 22332026 + 22332006 22332046 41 GATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCT GATTGGGTTGTGACTGCCGACCACTGCATCTCGTGAGTTCT < 41bp 1 0.187944161413666 1 0.1440389752388 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332026 chr1:22332025 nonsynonymous SNV 0.649 3 20 hm5C_associated_SNPs_44635 0 0 0 0 2 Endoplasmic reticulum 1 0.500231702971669 1 0.999536594056662 hm5C_site_43503 DeepMRMD:1;iRNA_m5C:0.999536594056662 43504 chr1 22332025 22332025 1 + G A UCEC 22332027 + 22332007 22332047 41 ATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTC ATTGGGTTGTGACTGCCGACCACTGCATCTCGTGAGTTCTC < 41bp 1 0.374710183245459 1 0.319517433643341 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332027 chr1:22332025 nonsynonymous SNV 0.649 3 19 hm5C_associated_SNPs_44636 0 0 0 0 2 Endoplasmic reticulum 1 0.500300909830058 1 0.999398180339883 hm5C_site_43504 DeepMRMD:1;iRNA_m5C:0.999398180339883 43505 chr1 22332025 22332025 1 + G A UCEC 22332032 + 22332012 22332052 41 GTTGTGACTGCCGGCCACTGCATCTCGTGAGTTCTCTACCC GTTGTGACTGCCGACCACTGCATCTCGTGAGTTCTCTACCC < 41bp 1 0.345115434945649 1 0.125527381896973 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332032 chr1:22332025 nonsynonymous SNV 0.649 3 14 hm5C_associated_SNPs_44637 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643664059 1 0.999536712671881 hm5C_site_43505 DeepMRMD:1;iRNA_m5C:0.999536712671881 43506 chr2 30756159 30756159 1 + C A UCEC 30756147 + 30756127 30756167 41 TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTCTCAAAGGT TCAGATTGGAGAAAATTTGCCTCAAAGCGAGTATCAAAGGT < 41bp 1 0.66553699221751 1 0.501719176769257 experiment 0.668926015564981 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30756147 chr2:30756159 nonsynonymous SNV 0.995 4 33 hm5C_associated_SNPs_44639 0 0 1 0 1 Endoplasmic reticulum 1 0.500231642118272 0.996561646461486 0.999536715763457 hm5C_site_43506 DeepMRMD:0.996561646461486;iRNA_m5C:0.999536715763457 43507 chr14 69704349 69704349 1 + C T UCEC 69704365 + 69704345 69704385 41 ACCACAACTCCCACGATGTGCTGCTGCTCTGCACCTCCTGC ACCATAACTCCCACGATGTGCTGCTGCTCTGCACCTCCTGC < 41bp 1 0.526092572036509 1 0.108944118022919 experiment 0.947814855926982 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EXD2 ENSG00000081177 CDS Human protein_coding chr14:69704365 chr14:69704349 synonymous SNV . 0 5 hm5C_associated_SNPs_44640 0 0 1 0 1 Ribosome 1 0.500255509936907 1 0.999488980126187 hm5C_site_43507 DeepMRMD:1;iRNA_m5C:0.999488980126187 43508 chr1 3342243 3342243 1 + G A UCEC 3342250 + 3342230 3342270 41 AAGTGCCACCTGTGCAACCGCTGCTTCGGGCAGCAGACCAA AAGTGCCACCTGTACAACCGCTGCTTCGGGCAGCAGACCAA < 41bp 1 0.273388869235876 1 0.153393894433975 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3342250 chr1:3342243 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_44641 0 0 0 0 2 Nucleus 1 0.500231644051532 1 0.999536711896935 hm5C_site_43508 DeepMRMD:1;iRNA_m5C:0.999536711896935 43509 chr7 130021497 130021497 1 + C T UCEC 130021489 + 130021469 130021509 41 AGCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCC AGCTGGACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCC < 41bp 1 0.125831772345907 1 0.192230433225632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021489 chr7:130021497 synonymous SNV . 0 29 hm5C_associated_SNPs_44642 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_43509 DeepMRMD:1;iRNA_m5C:0.999536712157815 43510 chr7 130021497 130021497 1 + C T UCEC 130021490 + 130021470 130021510 41 GCTGGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCA GCTGGACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCA < 41bp 1 0.524122420540294 1 0.264239907264709 experiment 0.951755158919412 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021490 chr7:130021497 synonymous SNV . 0 28 hm5C_associated_SNPs_44643 0 0 0 0 2 Endoplasmic reticulum 1 0.500231648607704 1 0.999536702784592 hm5C_site_43510 DeepMRMD:1;iRNA_m5C:0.999536702784592 43511 chr7 130021497 130021497 1 + C T UCEC 130021493 + 130021473 130021513 41 GGACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCG GGACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCG < 41bp 1 0.404414861411261 1 0.219224065542221 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021493 chr7:130021497 synonymous SNV . 0 25 hm5C_associated_SNPs_44644 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921084 1 0.999536712157832 hm5C_site_43511 DeepMRMD:1;iRNA_m5C:0.999536712157832 43512 chr7 130021497 130021497 1 + C T UCEC 130021494 + 130021474 130021514 41 GACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGA GACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCGA < 41bp 1 0.173158184249016 1 0.105853855609894 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021494 chr7:130021497 synonymous SNV . 0 24 hm5C_associated_SNPs_44645 0 0 0 0 2 Endoplasmic reticulum 1 0.500236897033 1 0.999526205934 hm5C_site_43512 DeepMRMD:1;iRNA_m5C:0.999526205934 43513 chr7 130021497 130021497 1 + C T UCEC 130021495 + 130021475 130021515 41 ACTTCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGAC ACTTCTGGCGGGGGCCTGCCCATCCTGGCTCCCCCATCGAC < 41bp 1 0.524757622478293 1 0.137002855539322 experiment 0.950484755043413 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021495 chr7:130021497 synonymous SNV . 0 23 hm5C_associated_SNPs_44646 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643504928 1 0.999536712990143 hm5C_site_43513 DeepMRMD:1;iRNA_m5C:0.999536712990143 43514 chr7 130021497 130021497 1 + C T UCEC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGT < 41bp 1 0.199447492251019 1 0.0815363526344299 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021497 synonymous SNV . 0 15 hm5C_associated_SNPs_44648 0 0 0 0 2 Endoplasmic reticulum 1 0.5002316460221 1 0.999536707955799 hm5C_site_43514 DeepMRMD:1;iRNA_m5C:0.999536707955799 43515 chr7 130021497 130021497 1 + C T UCEC 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGC < 41bp 1 0.205809146699792 1 0.0602035820484161 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021497 synonymous SNV . 0 13 hm5C_associated_SNPs_44649 0 0 0 0 2 Endoplasmic reticulum 1 0.500231645213317 1 0.999536709573366 hm5C_site_43515 DeepMRMD:1;iRNA_m5C:0.999536709573366 43516 chr7 130021497 130021497 1 + C T UCEC 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGCC < 41bp 1 0.404086468195063 1 0.284346163272858 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021497 synonymous SNV . 0 12 hm5C_associated_SNPs_44650 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_43516 DeepMRMD:1;iRNA_m5C:0.999536712157814 43517 chr7 130021497 130021497 1 + C T UCEC 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGCCC < 41bp 1 0.101418666869969 1 0.0679097473621368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021497 synonymous SNV . 0 11 hm5C_associated_SNPs_44651 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921428 1 0.999536712157144 hm5C_site_43517 DeepMRMD:1;iRNA_m5C:0.999536712157144 43518 chr7 130021497 130021497 1 + C T UCEC 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGCCCT < 41bp 1 0.0552403264618166 1 0.341299474239349 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021497 synonymous SNV . 0 10 hm5C_associated_SNPs_44652 0 0 0 0 2 Endoplasmic reticulum 1 0.500231623957727 1 0.999536752084545 hm5C_site_43518 DeepMRMD:1;iRNA_m5C:0.999536752084545 43519 chr7 130021497 130021497 1 + C T UCEC 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCATCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT < 41bp 1 0.412586244819135 1 0.121734976768494 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021497 synonymous SNV . 0 9 hm5C_associated_SNPs_44653 0 0 0 0 2 Endoplasmic reticulum 1 0.500203976144547 1 0.999592047710906 hm5C_site_43519 DeepMRMD:1;iRNA_m5C:0.999592047710906 43520 chr7 130021497 130021497 1 + C T UCEC 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CATCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG < 41bp 1 0.470214627347293 1 0.453294694423676 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021497 synonymous SNV . 0 3 hm5C_associated_SNPs_44654 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392104 1 0.99953671215792 hm5C_site_43520 DeepMRMD:1;iRNA_m5C:0.99953671215792 43521 chr12 117426552 117426552 1 + G A UCEC 117426534 + 117426514 117426554 41 CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAGCC CAGTAGCCGCTGCTGGAGATCTGATGTACCTGCTCAAAACC < 41bp 1 0.476502435491243 1 0.239121288061142 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426534 chr12:117426552 nonsynonymous SNV 0.937 1 39 hm5C_associated_SNPs_44656 0 0 0 0 1 Cytosol 1 0.500231643943268 1 0.999536712113464 hm5C_site_43521 DeepMRMD:1;iRNA_m5C:0.999536712113464 43522 chr11 63743745 63743745 1 + G T UCEC 63743738 + 63743718 63743758 41 TCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCT TCCTGCTTCGTGACCTTCCTCCTGCCATCGGGCTGGATCCT < 41bp 1 0.162230895694856 1 0.444667547941208 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743738 chr11:63743745 nonsynonymous SNV 0.504 0 28 hm5C_associated_SNPs_44658 0 0 1 0 1 Ribosome 1 0.500231512202311 1 0.999536975595379 hm5C_site_43522 DeepMRMD:1;iRNA_m5C:0.999536975595379 43523 chr11 63743745 63743745 1 + G T UCEC 63743739 + 63743719 63743759 41 CCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTG CCTGCTTCGTGACCTTCCTCCTGCCATCGGGCTGGATCCTG < 41bp 1 0.540909676777694 1 0.145775526762009 experiment 0.918180646444611 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX8A ENSG00000176340 CDS Human protein_coding chr11:63743739 chr11:63743745 nonsynonymous SNV 0.504 0 27 hm5C_associated_SNPs_44659 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_43523 DeepMRMD:1;iRNA_m5C:0.999536712157814 43524 chr7 55259423 55259423 1 + C A UCEC 55259432 + 55259412 55259452 41 GGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGA GGCATGAACTAATTGGAGGACCGTCGCTTGGTGCACCGCGA < 41bp 1 0.0647841559303689 1 0.259965658187866 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EGFR ENSG00000146648 CDS Human protein_coding chr7:55259432 chr7:55259423 stopgain 1.000 1 12 hm5C_associated_SNPs_44660 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43524 DeepMRMD:1;iRNA_m5C:0.999536712157815 43525 chr22 51143508 51143508 1 + C T UCEC 51143513 + 51143493 51143533 41 GAAGCCAGAAGAGGACGGGGCTCGGCGCAGAGGTGAGGGGT GAAGCCAGAAGAGGATGGGGCTCGGCGCAGAGGTGAGGGGT < 41bp 1 0.323500907112939 1 0.782187700271606 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143513 chr22:51143508 synonymous SNV . 0 16 hm5C_associated_SNPs_44661 0 0 1 0 1 cytosol 1 0.500231643921114 0.435624599456788 0.999536712157771 hm5C_site_43525 DeepMRMD:0.435624599456788;iRNA_m5C:0.999536712157771 43526 chr11 61897802 61897802 1 + A G UCEC 61897785 + 61897765 61897805 41 AAGCTCAGGATTGCGCAGGTCTCCCCTGGCCCACGGGACTC AAGCTCAGGATTGCGCAGGTCTCCCCTGGCCCACGGGGCTC < 41bp 1 0.418809206801506 1 0.202985227108002 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61897785 chr11:61897802 nonsynonymous SNV 0.014 1 38 hm5C_associated_SNPs_44663 0 0 1 0 0 chromatin 1 0.500231642434047 1 0.999536715131905 hm5C_site_43526 DeepMRMD:1;iRNA_m5C:0.999536715131905 43527 chr1 32645955 32645955 1 + C A UCEC 32645938 + 32645918 32645958 41 CTTCTCCTGACCCAGCATCGCTCATCACAATGAAGAACCAA CTTCTCCTGACCCAGCATCGCTCATCACAATGAAGAAACAA < 41bp 1 0.288113521466186 1 0.042214035987854 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TXLNA ENSG00000084652 CDS Human protein_coding chr1:32645938 chr1:32645955 nonsynonymous SNV 0.998 1 38 hm5C_associated_SNPs_44664 0 0 1 0 1 Nucleus 1 0.500231639686492 1 0.999536720627016 hm5C_site_43527 DeepMRMD:1;iRNA_m5C:0.999536720627016 43528 chr10 126523198 126523198 1 + G A UCEC 126523195 + 126523175 126523215 41 ACACTTGGAGATGCAGAGGCCTCGGATCCTCCTCCCCCTTA ACACTTGGAGATGCAGAGGCCTCAGATCCTCCTCCCCCTTA < 41bp 1 0.631591705541477 1 0.0566122531890869 experiment 0.736816588917047 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126523195 chr10:126523198 synonymous SNV . 0 24 hm5C_associated_SNPs_44665 0 0 1 0 0 Nucleus 1 0.500231643921159 1 0.999536712157682 hm5C_site_43528 DeepMRMD:1;iRNA_m5C:0.999536712157682 43529 chr2 100013255 100013255 1 + T G UCEC 100013261 + 100013241 100013281 41 CTGCAAGATAAAAATCCTCCCTCAGTACATTTTTAATTCTC CTGCAAGATAAAAAGCCTCCCTCAGTACATTTTTAATTCTC < 41bp 1 0.524835405505534 1 0.0757907629013062 experiment 0.950329188988931 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:100013261 chr2:100013255 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_44666 0 0 1 0 1 Ribosome 1 0.500231644898673 1 0.999536710202654 hm5C_site_43529 DeepMRMD:1;iRNA_m5C:0.999536710202654 43530 chr10 103917957 103917957 1 + C T UCEC 103917963 + 103917943 103917983 41 AGCTCAGACTAAAGCCCCTCCCAAACCAGGTACTGTTTCTG AGCTCAGACTAAAGTCCCTCCCAAACCAGGTACTGTTTCTG < 41bp 1 0.17264068942965 1 0.410084009170532 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917963 chr10:103917957 nonsynonymous SNV 0.426 0 15 hm5C_associated_SNPs_44667 0 0 1 0 1 Nucleus 1 0.500231645229449 1 0.999536709541103 hm5C_site_43530 DeepMRMD:1;iRNA_m5C:0.999536709541103 43531 chr1 236711387 236711387 1 + T A UCEC 236711377 + 236711357 236711397 41 GGCGTACACAGCCTGGAGTACAAACACAGATTTAAAGAGCT GGCGTACACAGCCTGGAGTACAAACACAGAATTAAAGAGCT < 41bp 1 0.100389816397014 1 0.256597340106964 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236711377 chr1:236711387 nonsynonymous SNV 0.993 2 31 hm5C_associated_SNPs_44668 0 0 1 1 1 Cytosol 1 0.500231643921083 1 0.999536712157834 hm5C_site_43531 DeepMRMD:1;iRNA_m5C:0.999536712157834 43532 chr11 44129389 44129389 1 + T C UCEC 44129385 + 44129365 44129405 41 CTGGGCCTCATTGCCACTGGCATGTTTCAGTTTTGGCCCCA CTGGGCCTCATTGCCACTGGCATGCTTCAGTTTTGGCCCCA < 41bp 1 0.21249161388593 1 0.11436715722084 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129385 chr11:44129389 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_44671 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_43532 DeepMRMD:1;iRNA_m5C:0.999536712157815 43533 chr11 44129389 44129389 1 + T C UCEC 44129403 + 44129383 44129423 41 GGCATGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAA GGCATGCTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAA < 41bp 1 0.0438827367910736 1 0.0298463404178619 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129403 chr11:44129389 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_44672 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921312 1 0.999536712157376 hm5C_site_43533 DeepMRMD:1;iRNA_m5C:0.999536712157376 43534 chr11 44129389 44129389 1 + T C UCEC 44129404 + 44129384 44129424 41 GCATGTTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAAT GCATGCTTCAGTTTTGGCCCCATTCTATCGAGTCCTCAAAT < 41bp 1 0.0300412797876977 1 0.0564543306827545 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129404 chr11:44129389 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_44673 0 0 1 0 0 Endoplasmic reticulum 1 0.500240552690284 1 0.999518894619432 hm5C_site_43534 DeepMRMD:1;iRNA_m5C:0.999518894619432 43535 chr5 158695986 158695986 1 + A C UCEC 158695994 + 158695974 158696014 41 CACACTTTCAGAAGATGATACTGTGCTCGATCTCAAACAGT CACACTTTCAGACGATGATACTGTGCTCGATCTCAAACAGT < 41bp 1 0.347221961144508 1 0.0924490094184875 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158695994 chr5:158695986 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_44674 0 0 1 0 1 Cytosol 1 0.500231632180078 1 0.999536735639844 hm5C_site_43535 DeepMRMD:1;iRNA_m5C:0.999536735639844 43536 chr14 23944953 23944953 1 + G A UCEC 23944972 + 23944952 23944992 41 CGTTTTAAGCCTCATCCCAGCAATATGATGAGCAAGGTAAG CATTTTAAGCCTCATCCCAGCAATATGATGAGCAAGGTAAG < 41bp 1 0.308534353611513 1 0.382488876581192 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NGDN ENSG00000129460 CDS Human protein_coding chr14:23944972 chr14:23944953 nonsynonymous SNV 0.995 1 2 hm5C_associated_SNPs_44675 0 0 1 0 2 Cytosol 1 0.500231646179671 1 0.999536707640659 hm5C_site_43536 DeepMRMD:1;iRNA_m5C:0.999536707640659 43537 chrX 21995200 21995200 1 + A G UCEC 21995205 + 21995185 21995225 41 ACCCATAGTGCGAGGAGGAGCCATCGACAGATACTGGCCCA ACCCATAGTGCGAGGGGGAGCCATCGACAGATACTGGCCCA < 41bp 1 0.178765521912742 1 0.488583564758301 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMS ENSG00000102172 CDS Human protein_coding chrX:21995205 chrX:21995200 synonymous SNV . 0 16 hm5C_associated_SNPs_44676 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43537 DeepMRMD:1;iRNA_m5C:0.999536712157815 43538 chr16 22335844 22335844 1 + G T UCEC 22335864 + 22335844 22335884 41 GGACTTCCTGGAGCACATGGCCGTGGTGAGGATCAACAAAG TGACTTCCTGGAGCACATGGCCGTGGTGAGGATCAACAAAG < 41bp 1 0.242242749647253 1 0.151188939809799 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22335864 chr16:22335844 nonsynonymous SNV 0.997 2 1 hm5C_associated_SNPs_44677 0 0 1 0 1 Ribosome 1 0.500231638732574 1 0.999536722534852 hm5C_site_43538 DeepMRMD:1;iRNA_m5C:0.999536722534852 43539 chr2 241514991 241514991 1 + C T UCEC 241514997 + 241514977 241515017 41 TCCTGAGCTTCTTCCCGGAGCTGAAGGAGCAGAGCGTGGAC TCCTGAGCTTCTTCTCGGAGCTGAAGGAGCAGAGCGTGGAC < 41bp 1 0.588679712069207 1 0.40302562713623 experiment 0.822640575861587 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241514997 chr2:241514991 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_44679 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43539 DeepMRMD:1;iRNA_m5C:0.999536712157815 43540 chr1 228470924 228470924 1 + C T UCEC 228470936 + 228470916 228470956 41 CTCAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC CTCAAGGATGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC < 41bp 1 0.213306609654667 1 0.273010730743408 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228470936 chr1:228470924 synonymous SNV . 0 9 hm5C_associated_SNPs_44680 0 0 0 0 1 Ribosome 1 0.500231651567993 1 0.999536696864015 hm5C_site_43540 DeepMRMD:1;iRNA_m5C:0.999536696864015 43541 chr10 1118121 1118121 1 + C T UCEC 1118127 + 1118107 1118147 41 AAGCGCAAGTTGTTCGACTGCTCGCCAAACAAAACAGAAGC AAGCGCAAGTTGTTTGACTGCTCGCCAAACAAAACAGAAGC < 41bp 1 0.274868307078348 1 0.654619634151459 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR37 ENSG00000047056 CDS Human protein_coding chr10:1118127 chr10:1118121 nonsynonymous SNV 0.938 1 15 hm5C_associated_SNPs_44681 0 0 1 1 1 Cytosol 1 0.500371529121595 0.690760731697082 0.999256941756811 hm5C_site_43541 DeepMRMD:0.690760731697082;iRNA_m5C:0.999256941756811 43542 chr1 228470927 228470927 1 + G A UCEC 228470936 + 228470916 228470956 41 CTCAAGGACGCGGGCGAGTACACGTGTGAGGTGGAGGCTTC CTCAAGGACGCAGGCGAGTACACGTGTGAGGTGGAGGCTTC < 41bp 1 0.179910402558263 1 0.306504786014557 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control OBSCN ENSG00000154358 CDS Human protein_coding chr1:228470936 chr1:228470927 synonymous SNV . 0 12 hm5C_associated_SNPs_44682 0 0 0 0 1 Ribosome 1 0.500231644156774 1 0.999536711686452 hm5C_site_43542 DeepMRMD:1;iRNA_m5C:0.999536711686452 43543 chr19 16296498 16296498 1 + G T UCEC 16296488 + 16296468 16296508 41 ACTCCTGGAAGCAATGGGAACGAGCAAAAAGAACGAGGAGG ACTCCTGGAAGCAATGGGAACGAGCAAAAATAACGAGGAGG < 41bp 1 0.513527746415648 1 0.593364238739014 experiment 0.972944507168704 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control FAM32A ENSG00000105058 CDS Human protein_coding chr19:16296488 chr19:16296498 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_44683 0 0 1 0 2 Ribosome 1 0.500231643919985 0.813271522521972 0.99953671216003 hm5C_site_43543 DeepMRMD:0.813271522521972;iRNA_m5C:0.99953671216003 43544 chr2 85598248 85598248 1 + G A UCEC 85598246 + 85598226 85598266 41 TATTCGAAGGACTGGGCTCGCCGCCCTCCGACACTACCTCT TATTCGAAGGACTGGGCTCGCCACCCTCCGACACTACCTCT < 41bp 1 0.265234242120189 1 0.263414680957794 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598246 chr2:85598248 nonsynonymous SNV 0.509 2 23 hm5C_associated_SNPs_44684 0 0 0 12 1 Cytosol 1 0.500231643190782 1 0.999536713618437 hm5C_site_43544 DeepMRMD:1;iRNA_m5C:0.999536713618437 43545 chr16 78143698 78143698 1 + G T UCEC 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTTGCCATACGGATGGGAACAATAAACTGATGAGAACGGA < 41bp 1 0.183271267753626 1 0.359098464250565 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143698 stopgain 0.999 1 24 hm5C_associated_SNPs_44686 0 0 1 0 2 Ribosome 1 0.50023164392318 1 0.999536712153639 hm5C_site_43545 DeepMRMD:1;iRNA_m5C:0.999536712153639 43546 chr22 18979472 18979472 1 + T C UCEC 18979466 + 18979446 18979486 41 AGATGGAGAAGCGAACCAAGCCTGTCTGTGTGTTCTGGAAC AGATGGAGAAGCGAACCAAGCCTGTCCGTGTGTTCTGGAAC < 41bp 1 0.0957703461743179 1 0.0562752187252045 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979466 chr22:18979472 . . 0 27 hm5C_associated_SNPs_44687 0 0 1 0 1 unknown 1 0.500231644012226 1 0.999536711975548 hm5C_site_43546 DeepMRMD:1;iRNA_m5C:0.999536711975548 43547 chr11 125475547 125475547 1 + C T UCEC 125475549 + 125475529 125475569 41 GCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA GCCATCTTTTGCATGCTATTCACCTACTACATGTGGATCAA < 41bp 1 0.605317730827758 1 0.44750115275383 experiment 0.789364538344484 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control STT3A ENSG00000134910 CDS Human protein_coding chr11:125475549 chr11:125475547 nonsynonymous SNV 0.994 1 19 hm5C_associated_SNPs_44688 0 0 1 0 2 Endoplasmic reticulum 1 0.500231614354446 1 0.999536771291108 hm5C_site_43547 DeepMRMD:1;iRNA_m5C:0.999536771291108 43548 chr1 153713790 153713790 1 + A C UCEC 153713778 + 153713758 153713798 41 CAGGTGTGCAAAGGCCTCCCCCAGCATGAAGAAATCTGCCT CAGGTGTGCAAAGGCCTCCCCCAGCATGAAGACATCTGCCT < 41bp 1 0.164893378699213 1 0.201267093420029 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control INTS3 ENSG00000143624 CDS Human protein_coding chr1:153713778 chr1:153713790 nonsynonymous SNV 0.996 2 33 hm5C_associated_SNPs_44690 0 0 1 0 2 chromatin 1 0.500231730974279 1 0.999536538051442 hm5C_site_43548 DeepMRMD:1;iRNA_m5C:0.999536538051442 43549 chr9 135932281 135932281 1 + G T UCEC 135932293 + 135932273 135932313 41 GACCATCCGCTCCAAGAGGCCTGGTAAGAGCCGCTTGGGGT GACCATCCTCTCCAAGAGGCCTGGTAAGAGCCGCTTGGGGT < 41bp 1 0.514528972583537 1 0.103738516569138 experiment 0.970942054832926 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135932293 chr9:135932281 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_44691 0 0 1 0 1 Ribosome 1 0.500231643905695 1 0.999536712188611 hm5C_site_43549 DeepMRMD:1;iRNA_m5C:0.999536712188611 43550 chr14 100950434 100950434 1 + G T UCEC 100950419 + 100950399 100950439 41 AACATCTTTTTATGTGGAGGCTTCAGCTCTGAAATGAAAGC AACATCTTTTTATGTGGAGGCTTCAGCTCTGAAATTAAAGC < 41bp 1 0.148289952875199 1 0.387586295604706 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WDR25 ENSG00000176473 CDS Human protein_coding chr14:100950419 chr14:100950434 nonsynonymous SNV 0.993 0 36 hm5C_associated_SNPs_44692 0 0 0 0 1 chromatin 1 0.500231659479008 1 0.999536681041983 hm5C_site_43550 DeepMRMD:1;iRNA_m5C:0.999536681041983 43551 chr17 45757974 45757974 1 + A C UCEC 45757956 + 45757936 45757976 41 ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACAAA ATGAATTGTTAACTGAAGGGCGGAGATCGAAGACTAACCAA < 41bp 1 0.459861026124228 1 0.301657974720001 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45757956 chr17:45757974 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_44693 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43551 DeepMRMD:1;iRNA_m5C:0.999536712157815 43552 chr19 45912975 45912975 1 + C T UCEC 45912980 - 45912960 45913000 41 TTCTCCCTCCCATCCAGGCCCGGAGGCTGTTTGATGTCCTG TTCTCCCTCCCATCCAGGCCCGGAGACTGTTTGATGTCCTG < 41bp 1 0.332728806721488 1 0.296015918254852 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ERCC1 ENSG00000012061 CDS Human protein_coding chr19:45912980 chr19:45912975 nonsynonymous SNV 0.995 0 26 hm5C_associated_SNPs_44694 0 0 0 0 1 Cytosol 1 0.500231643921097 1 0.999536712157806 hm5C_site_43552 DeepMRMD:1;iRNA_m5C:0.999536712157806 43553 chr4 187122437 187122437 1 + G A UCEC 187122449 + 187122429 187122469 41 CTGATGACGAAGGGAACAGGCTAAGTCATGAAGATATTCGA CTGATGACAAAGGGAACAGGCTAAGTCATGAAGATATTCGA < 41bp 1 0.372117524299551 1 0.0866914987564087 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187122449 chr4:187122437 nonsynonymous SNV 0.922 0 9 hm5C_associated_SNPs_44695 0 0 1 0 1 Nucleus 1 0.500231643839697 1 0.999536712320606 hm5C_site_43553 DeepMRMD:1;iRNA_m5C:0.999536712320606 43554 chr20 30526965 30526965 1 + G A UCEC 30526975 + 30526955 30526995 41 AGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGA AGGGAGAAGCAAGTCGGGGGCTTTGACCTCATGTGGAATGA < 41bp 1 0.199404727840623 1 0.102158784866333 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30526975 chr20:30526965 nonsynonymous SNV 0.842 1 11 hm5C_associated_SNPs_44696 0 0 0 0 1 exosome 1 0.500231643921099 1 0.999536712157802 hm5C_site_43554 DeepMRMD:1;iRNA_m5C:0.999536712157802 Late-onset Alzheimer's disease 43555 chr7 69599531 69599531 1 + C T UCEC 69599551 + 69599531 69599571 41 CCTTCCAGCTTGGGAACAGGCTACTTCGTAAGTCTATCTCA TCTTCCAGCTTGGGAACAGGCTACTTCGTAAGTCTATCTCA < 41bp 1 0.206848973055069 1 0.0647813379764557 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69599551 chr7:69599531 nonsynonymous SNV 1.000 0 1 hm5C_associated_SNPs_44697 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43555 DeepMRMD:1;iRNA_m5C:0.999536712157815 43556 chr6 133137686 133137686 1 + A G UCEC 133137682 + 133137662 133137702 41 TGGAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAG TGGAGGCCCTTTGTGCTGAACACCGAATCAACCTAATTAAG < 41bp 1 0.660117349623238 1 0.0437493622303009 experiment 0.679765300753524 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137682 chr6:133137686 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_44698 0 0 1 0 2 Cytosol 1 0.500231643921111 1 0.999536712157777 hm5C_site_43556 DeepMRMD:1;iRNA_m5C:0.999536712157777 43557 chr6 133137686 133137686 1 + A G UCEC 133137684 + 133137664 133137704 41 GAGGCCCTTTGTGCTGAACACCAAATCAACCTAATTAAGGT GAGGCCCTTTGTGCTGAACACCGAATCAACCTAATTAAGGT < 41bp 1 0.598710770537013 1 0.491567313671112 experiment 0.802578458925973 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137684 chr6:133137686 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_44699 0 0 1 0 2 Cytosol 1 0.500231643915917 1 0.999536712168166 hm5C_site_43557 DeepMRMD:1;iRNA_m5C:0.999536712168166 43558 chr6 133137686 133137686 1 + A G UCEC 133137694 + 133137674 133137714 41 GTGCTGAACACCAAATCAACCTAATTAAGGTAAGGCTGCTA GTGCTGAACACCGAATCAACCTAATTAAGGTAAGGCTGCTA < 41bp 1 0.491230029640488 1 0.186433523893356 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137694 chr6:133137686 nonsynonymous SNV 0.997 1 13 hm5C_associated_SNPs_44700 0 0 1 0 2 Cytosol 1 0.50023164380434 1 0.999536712391319 hm5C_site_43558 DeepMRMD:1;iRNA_m5C:0.999536712391319 43559 chr10 73122283 73122283 1 + C T UCEC 73122270 + 73122250 73122290 41 CTAAGATTGTGCCCAGGGAGCTGGCTGAGGCCACGGGAGTG CTAAGATTGTGCCCAGGGAGCTGGCTGAGGCCATGGGAGTG < 41bp 1 0.663645223854715 1 0.448062479496002 experiment 0.672709552290571 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73122270 chr10:73122283 nonsynonymous SNV 0.670 4 34 hm5C_associated_SNPs_44701 0 0 1 1 0 chromatin 1 0.500231643923167 1 0.999536712153667 hm5C_site_43559 DeepMRMD:1;iRNA_m5C:0.999536712153667 43560 chr13 25905590 25905590 1 + G A UCEC 25905593 + 25905573 25905613 41 GAAGCCAAGAAGTGGCAGAACACACCCAGAGTTACTACTGG GAAGCCAAGAAGTGGCAAAACACACCCAGAGTTACTACTGG < 41bp 1 0.340247674968199 1 0.0614571571350098 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP58 ENSG00000139496 CDS Human protein_coding chr13:25905593 chr13:25905590 synonymous SNV . 0 18 hm5C_associated_SNPs_44703 0 0 1 0 1 Cytosol 1 0.500231641480666 1 0.999536717038668 hm5C_site_43560 DeepMRMD:1;iRNA_m5C:0.999536717038668 43561 chr8 2092608 2092608 1 + G A UCEC 2092590 + 2092570 2092610 41 AACCTCTTCCGTCCAAAGACCTTGAATCTGACCTGCACGGT AACCTCTTCCGTCCAAAGACCTTGAATCTGACCTGCACAGT < 41bp 1 0.28551797012094 1 0.252942025661469 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2092590 chr8:2092608 synonymous SNV . 0 39 hm5C_associated_SNPs_44704 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43561 DeepMRMD:1;iRNA_m5C:0.999536712157815 43562 chr17 73058266 73058266 1 + T G UCEC 73058257 + 73058237 73058277 41 ATAACTACGGCAATGAGGATCAGGCAGAATTCCTCTGTGTT ATAACTACGGCAATGAGGATCAGGCAGAAGTCCTCTGTGTT < 41bp 1 0.244023171093867 1 0.782800197601318 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058257 chr17:73058266 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_44705 0 0 1 0 2 Cytosol 1 0.500231643894197 0.434399604797364 0.999536712211605 hm5C_site_43562 DeepMRMD:0.434399604797364;iRNA_m5C:0.999536712211605 43563 chr11 120280116 120280116 1 + G T UCEC 120280127 + 120280107 120280147 41 CTCCTCCAAGAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT CTCCTCCAATAAGACAAAGTCTAGTTCAGAGGAGAGTAGAT < 41bp 1 0.171280267555006 1 0.32916048169136 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120280127 chr11:120280116 nonsynonymous SNV 1.000 1 10 hm5C_associated_SNPs_44706 0 0 1 0 2 Cytosol 1 0.500238332941974 1 0.999523334116052 hm5C_site_43563 DeepMRMD:1;iRNA_m5C:0.999523334116052 43564 chr17 57754428 57754428 1 + G T UCEC 57754417 + 57754397 57754437 41 ATCTACATAGACAGTAATAACAACCCGGAGAGATTTCTTCG ATCTACATAGACAGTAATAACAACCCGGAGATATTTCTTCG < 41bp 1 0.267665874020487 1 0.144222587347031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57754417 chr17:57754428 nonsynonymous SNV 1.000 2 32 hm5C_associated_SNPs_44707 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43564 DeepMRMD:1;iRNA_m5C:0.999536712157815 43565 chr22 46681152 46681152 1 + C T UCEC 46681140 + 46681120 46681160 41 AGAACTTTATTCTTCCAGGGCGAATATGAGGCCGCGCTGAC AGAACTTTATTCTTCCAGGGCGAATATGAGGCTGCGCTGAC < 41bp 1 0.11092632055655 1 0.241885125637054 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTC38 ENSG00000075234 CDS Human protein_coding chr22:46681140 chr22:46681152 synonymous SNV . 0 33 hm5C_associated_SNPs_44708 0 0 1 0 2 Ribosome 1 0.500231643929866 1 0.999536712140268 hm5C_site_43565 DeepMRMD:1;iRNA_m5C:0.999536712140268 43566 chrX 123191727 123191727 1 + G A UCEC 123191735 + 123191715 123191755 41 GGCTCTTCAGTCGTAGAGATCCAGAGGAGGATGGAATGATG GGCTCTTCAGTCATAGAGATCCAGAGGAGGATGGAATGATG < 41bp 1 0.431027081316635 1 0.552512347698212 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123191735 chrX:123191727 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_44709 0 0 1 0 1 Nucleus 1 0.500231643920659 0.894975304603576 0.999536712158681 hm5C_site_43566 DeepMRMD:0.894975304603576;iRNA_m5C:0.999536712158681 43567 chr6 7583131 7583131 1 + G T UCEC 7583125 + 7583105 7583145 41 ATATTCCCGCAAGGAGGAGGCTATTAGGAAGATAGAATCGG ATATTCCCGCAAGGAGGAGGCTATTATGAAGATAGAATCGG < 41bp 1 0.0786923995487109 1 0.0879997313022614 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7583125 chr6:7583131 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_44710 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43567 DeepMRMD:1;iRNA_m5C:0.999536712157815 43568 chr15 90814700 90814700 1 + A T UCEC 90814684 + 90814664 90814704 41 CTTATGCCAGGGCATGAAGCCTCATCTAAAGACCCAAATCA CTTATGCCAGGGCATGAAGCCTCATCTAAAGACCCATATCA < 41bp 1 0.370771349582424 1 0.4193195104599 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NGRN ENSG00000182768 CDS Human protein_coding chr15:90814684 chr15:90814700 nonsynonymous SNV 0.001 1 37 hm5C_associated_SNPs_44711 0 0 1 0 0 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_43568 DeepMRMD:1;iRNA_m5C:0.99953671215781 43569 chr17 42636026 42636026 1 + A C UCEC 42636043 + 42636023 42636063 41 AAGAAGGAGGGCTGCACCATCCTCTTCATGATGCTCTACTT AAGCAGGAGGGCTGCACCATCCTCTTCATGATGCTCTACTT < 41bp 1 0.151530362372182 1 0.112647235393524 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FZD2 ENSG00000180340 CDS Human protein_coding chr17:42636043 chr17:42636026 nonsynonymous SNV 0.999 2 4 hm5C_associated_SNPs_44712 0 0 0 0 0 exosome 1 0.500231643910412 1 0.999536712179176 hm5C_site_43569 DeepMRMD:1;iRNA_m5C:0.999536712179176 43570 chr3 9515081 9515081 1 + A G UCEC 9515077 + 9515057 9515097 41 TGCCCATGGTGTGCAGGGATCCTCAGCCCGAACTCCATCTT TGCCCATGGTGTGCAGGGATCCTCGGCCCGAACTCCATCTT < 41bp 1 0.217443380355036 1 0.0404566824436188 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9515077 chr3:9515081 synonymous SNV . 0 25 hm5C_associated_SNPs_44713 0 0 1 0 0 Nucleus 1 0.50023162078646 1 0.999536758427081 hm5C_site_43570 DeepMRMD:1;iRNA_m5C:0.999536758427081 43571 chr7 150765124 150765124 1 + G A UCEC 150765104 + 150765084 150765124 41 CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCA < 41bp 1 0.58099983986784 1 0.36908808350563 experiment 0.83800032026432 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765104 chr7:150765124 nonsynonymous SNV 0.999 3 41 hm5C_associated_SNPs_44714 0 0 1 0 1 Ribosome 1 0.50023164395132 1 0.99953671209736 hm5C_site_43571 DeepMRMD:1;iRNA_m5C:0.99953671209736 43572 chr7 150765124 150765124 1 + G A UCEC 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCAC < 41bp 1 0.546639493457049 1 0.782880663871765 experiment 0.906721013085902 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765124 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_44715 0 0 1 0 1 Ribosome 1 0.500231643920731 0.43423867225647 0.999536712158538 hm5C_site_43572 DeepMRMD:0.43423867225647;iRNA_m5C:0.999536712158538 43573 chr6 155139671 155139671 1 + G A UCEC 155139674 + 155139654 155139694 41 TCGACAAGATGCATTTCGAGCTCTTCAGAAACTCAGTTCTG TCGACAAGATGCATTTCAAGCTCTTCAGAAACTCAGTTCTG < 41bp 1 0.201607012784229 1 0.200932830572128 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155139674 chr6:155139671 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_44716 0 0 1 0 2 Nucleus 1 0.500236595296173 1 0.999526809407654 hm5C_site_43573 DeepMRMD:1;iRNA_m5C:0.999526809407654 43574 chr7 6634125 6634125 1 + T C UCEC 6634139 + 6634119 6634159 41 CTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA CTGCTGCTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA < 41bp 1 0.0466458267133633 1 0.321909964084625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634139 chr7:6634125 synonymous SNV . 0 7 hm5C_associated_SNPs_44717 0 0 1 0 1 chromatin 1 0.500225222041125 1 0.99954955591775 hm5C_site_43574 DeepMRMD:1;iRNA_m5C:0.99954955591775 43575 chr3 170009710 170009710 1 + T G UCEC 170009695 + 170009675 170009715 41 TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATTTTAAG TTCTGTGGTACTCCTAATTACATTGCTCCTGAAATGTTAAG < 41bp 1 0.110718478192391 1 0.0404757559299469 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRKCI ENSG00000163558 CDS Human protein_coding chr3:170009695 chr3:170009710 nonsynonymous SNV 0.997 4 36 hm5C_associated_SNPs_44718 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43575 DeepMRMD:1;iRNA_m5C:0.999536712157815 43576 chr10 102762412 102762412 1 + C T UCEC 102762420 + 102762400 102762440 41 CCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCGCCACCACG CCGGCCCTGTCCTGGGGGGCCAGCTCCTCCCCGCCACCACG < 41bp 1 0.32827390183286 1 0.466960072517395 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102762420 chr10:102762412 synonymous SNV . 0 13 hm5C_associated_SNPs_44719 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_43576 DeepMRMD:1;iRNA_m5C:0.999536712157816 43577 chr2 102959741 102959741 1 + G A UCEC 102959733 + 102959713 102959753 41 ACAGGTTGCTTTCTTAGTTTCAGCAATGGGCTGGCTTGTCT ACAGGTTGCTTTCTTAGTTTCAGCAATGAGCTGGCTTGTCT < 41bp 1 0.624726522334029 1 0.792106747627258 experiment 0.750546955331941 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102959733 chr2:102959741 nonsynonymous SNV 0.003 0 29 hm5C_associated_SNPs_44720 0 0 0 0 1 Endoplasmic reticulum 1 0.500231690342609 0.415786504745484 0.999536619314782 hm5C_site_43577 DeepMRMD:0.415786504745484;iRNA_m5C:0.999536619314782 43578 chr17 43323043 43323043 1 + G T UCEC 43323037 + 43323017 43323057 41 GTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGG GTGGAGTACTTCGGAGAGAACCCCAATACCACATCCCCAGG < 41bp 1 0.535902618493539 1 0.458982288837433 experiment 0.928194763012922 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323037 chr17:43323043 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_44721 0 0 1 0 3 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_43578 DeepMRMD:1;iRNA_m5C:0.999536712157814 43579 chr1 26136285 26136285 1 + C T UCEC 26136269 + 26136249 26136289 41 CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCC CATCATCCTCTCCAAAGACGCCACCCACGTCCGCGATTTCC < 41bp 1 0.0359107683861424 1 0.0551288723945618 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136269 chr1:26136285 synonymous SNV . 0 37 hm5C_associated_SNPs_44722 0 0 1 0 1 unknown 1 0.500231643914559 1 0.999536712170883 hm5C_site_43579 DeepMRMD:1;iRNA_m5C:0.999536712170883 43580 chr1 26136285 26136285 1 + C T UCEC 26136270 + 26136250 26136290 41 ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCG ATCATCCTCTCCAAAGACGCCACCCACGTCCGCGATTTCCG < 41bp 1 0.102844843918595 1 0.0325266122817993 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136270 chr1:26136285 synonymous SNV . 0 36 hm5C_associated_SNPs_44723 0 0 1 0 1 unknown 1 0.500246911189056 1 0.999506177621889 hm5C_site_43580 DeepMRMD:1;iRNA_m5C:0.999506177621889 43581 chr1 26136285 26136285 1 + C T UCEC 26136273 + 26136253 26136293 41 ATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCT ATCCTCTCCAAAGACGCCACCCACGTCCGCGATTTCCGGCT < 41bp 1 0.119226329940207 1 0.112191200256348 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136273 chr1:26136285 synonymous SNV . 0 33 hm5C_associated_SNPs_44724 0 0 1 0 1 unknown 1 0.500231686230356 1 0.999536627539287 hm5C_site_43581 DeepMRMD:1;iRNA_m5C:0.999536627539287 43582 chr1 26136285 26136285 1 + C T UCEC 26136274 + 26136254 26136294 41 TCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTC TCCTCTCCAAAGACGCCACCCACGTCCGCGATTTCCGGCTC < 41bp 1 0.553561778128959 1 0.0605772733688354 experiment 0.892876443742082 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SELENON ENSG00000162430 CDS Human protein_coding chr1:26136274 chr1:26136285 synonymous SNV . 0 32 hm5C_associated_SNPs_44725 0 0 1 0 1 unknown 1 0.500231633793114 1 0.999536732413773 hm5C_site_43582 DeepMRMD:1;iRNA_m5C:0.999536732413773 43583 chr3 25542761 25542761 1 + G A UCEC 25542771 + 25542751 25542791 41 ACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTT ACCAGGAATCAATGCCAATACTGTCGACTCCAGAAGTGCTT < 41bp 1 0.238935560182215 1 0.0825390517711639 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RARB ENSG00000077092 CDS Human protein_coding chr3:25542771 chr3:25542761 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_44726 0 0 1 0 2 nucleoplasm 1 0.500231643921093 1 0.999536712157815 hm5C_site_43583 DeepMRMD:1;iRNA_m5C:0.999536712157815 43584 chr17 4905839 4905839 1 + G A UCEC 4905833 + 4905813 4905853 41 AGTCGGGGTTCTCTGCGGGTCCGGGAGCACCCCATCCTGGG AGTCGGGGTTCTCTGCGGGTCCGGGAACACCCCATCCTGGG < 41bp 1 0.515717851465978 1 0.619586706161499 experiment 0.968564297068043 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905833 chr17:4905839 synonymous SNV . 0 27 hm5C_associated_SNPs_44727 0 0 1 0 2 Ribosome 1 0.500231643921092 0.760826587677002 0.999536712157815 hm5C_site_43584 DeepMRMD:0.760826587677002;iRNA_m5C:0.999536712157815 43585 chr15 66816079 66816079 1 + T G UCEC 66816065 + 66816045 66816085 41 GGTCCTTTGAATCATCTCTACAGAGAACTGAAATTTCTTCT GGTCCTTTGAATCATCTCTACAGAGAACTGAAATGTCTTCT < 41bp 1 0.437343551073004 1 0.331680953502655 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66816065 chr15:66816079 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_44728 0 0 1 0 2 Ribosome 1 0.500231643920361 1 0.999536712159278 hm5C_site_43585 DeepMRMD:1;iRNA_m5C:0.999536712159278 43586 chr16 29828312 29828312 1 + G T UCEC 29828300 + 29828280 29828320 41 AGGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAA AGGAGAGATCCGATGAGGAGCCGGAGGCCAAATAAGAGGAA < 41bp 1 0.694195321878436 1 0.595689594745636 experiment 0.611609356243127 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828300 chr16:29828312 stopgain 1.000 1 33 hm5C_associated_SNPs_44729 0 0 1 0 1 Ribosome 1 0.500231643921092 0.808620810508728 0.999536712157815 hm5C_site_43586 DeepMRMD:0.808620810508728;iRNA_m5C:0.999536712157815 43587 chr16 29828312 29828312 1 + G T UCEC 29828307 + 29828287 29828327 41 ATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAGGAAA ATCCGATGAGGAGCCGGAGGCCAAATAAGAGGAAGAGGAAA < 41bp 1 0.364146315105004 1 0.494572937488556 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29828307 chr16:29828312 stopgain 1.000 1 26 hm5C_associated_SNPs_44731 0 0 1 0 1 Ribosome 1 0.500231643921084 1 0.999536712157832 hm5C_site_43587 DeepMRMD:1;iRNA_m5C:0.999536712157832 43588 chr9 131730845 131730845 1 + G T UCEC 131730830 + 131730810 131730850 41 TTGTTCAGTGCCTTCGGGAACAGTCCATGCTGCTAGAAATT TTGTTCAGTGCCTTCGGGAACAGTCCATGCTGCTATAAATT < 41bp 1 0.0419932768553591 1 0.316308557987213 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NUP188 ENSG00000095319 CDS Human protein_coding chr9:131730830 chr9:131730845 stopgain 0.999 1 36 hm5C_associated_SNPs_44732 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43588 DeepMRMD:1;iRNA_m5C:0.999536712157815 43589 chr22 32889266 32889266 1 + G A UCEC 32889253 + 32889233 32889273 41 TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCGAGGTGAT TCCTGTGGAGGTTTTTATATCTGCGTGATTTTCAAGGTGAT < 41bp 1 0.55349929228054 1 0.462613224983215 experiment 0.893001415438921 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889253 chr22:32889266 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_44733 0 0 1 0 1 chromatin 1 0.500231643921086 1 0.999536712157827 hm5C_site_43589 DeepMRMD:1;iRNA_m5C:0.999536712157827 43590 chr10 81036951 81036951 1 + C T UCEC 81036966 + 81036946 81036986 41 TCCTCCTGGTGCGAAGAGCTCGGCCGCCTGCTGCTGCTCCG TCCTCTTGGTGCGAAGAGCTCGGCCGCCTGCTGCTGCTCCG < 41bp 1 0.559465134123172 1 0.274315237998962 experiment 0.881069731753656 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:81036966 chr10:81036951 synonymous SNV . 0 6 hm5C_associated_SNPs_44735 0 0 1 0 0 Nucleus 1 0.50023164448469 1 0.999536711030619 hm5C_site_43590 DeepMRMD:1;iRNA_m5C:0.999536711030619 43591 chr19 7589945 7589945 1 + C T UCEC 7589936 + 7589916 7589956 41 CACCCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC CACCCCCAGAAGAGGAAGACCTTCGCCGTTGTCTCAAATAC < 41bp 1 0.298498166342053 1 0.156070232391357 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589936 chr19:7589945 nonsynonymous SNV 0.982 3 30 hm5C_associated_SNPs_44736 0 0 1 0 1 chromatin 1 0.500232510100567 1 0.999534979798866 hm5C_site_43591 DeepMRMD:1;iRNA_m5C:0.999534979798866 43592 chr2 233681608 233681608 1 + A C UCEC 233681615 + 233681595 233681635 41 AAGAGAGGCAGAAATGAGGGCAAAACGGGAAGAGGAAGAGC AAGAGAGGCAGAACTGAGGGCAAAACGGGAAGAGGAAGAGC < 41bp 1 0.291287834733328 1 0.416121542453766 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681615 chr2:233681608 nonsynonymous SNV 1.000 0 14 hm5C_associated_SNPs_44737 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43592 DeepMRMD:1;iRNA_m5C:0.999536712157815 43593 chr7 102107901 102107901 1 + C T UCEC 102107918 + 102107898 102107938 41 AGTCCCTCAGCGAGTTCACCCAGTGGCGGGTATGTCCCTGT AGTTCCTCAGCGAGTTCACCCAGTGGCGGGTATGTCCCTGT < 41bp 1 0.424862604230001 1 0.338834524154663 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102107918 chr7:102107901 nonsynonymous SNV 0.998 4 4 hm5C_associated_SNPs_44738 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43593 DeepMRMD:1;iRNA_m5C:0.999536712157815 43594 chr1 212619345 212619345 1 + C T UCEC 212619354 + 212619334 212619374 41 AAGGATGAGTTCTGATGTTCCCCCTGCAGGAGCAGGTTCTT AAGGATGAGTTTTGATGTTCCCCCTGCAGGAGCAGGTTCTT < 41bp 1 0.297538882434673 1 0.0463404357433319 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NENF ENSG00000117691 CDS Human protein_coding chr1:212619354 chr1:212619345 synonymous SNV . 0 12 hm5C_associated_SNPs_44739 0 0 1 0 0 Cytosol 1 0.50023164258793 1 0.99953671482414 hm5C_site_43594 DeepMRMD:1;iRNA_m5C:0.99953671482414 43595 chr20 35835736 35835736 1 + G A UCEC 35835730 + 35835710 35835750 41 GCAAGAAGAACTTTGAGTCCCTCTCCGAAGCCTTCAGCGTG GCAAGAAGAACTTTGAGTCCCTCTCCAAAGCCTTCAGCGTG < 41bp 1 0.2241114743593 1 0.110110342502594 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35835730 chr20:35835736 nonsynonymous SNV 0.997 2 27 hm5C_associated_SNPs_44741 0 0 1 0 1 Ribosome 1 0.500231643927251 1 0.999536712145497 hm5C_site_43595 DeepMRMD:1;iRNA_m5C:0.999536712145497 43596 chr5 162905753 162905753 1 + A G UCEC 162905772 + 162905752 162905792 41 AAAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT AGAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACT < 41bp 1 0.346600131650233 1 0.168909549713135 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control HMMR ENSG00000072571 CDS Human protein_coding chr5:162905772 chr5:162905753 synonymous SNV . 0 2 hm5C_associated_SNPs_44742 0 0 1 0 2 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_43596 DeepMRMD:1;iRNA_m5C:0.999536712157814 43597 chr5 167933122 167933122 1 + A G UCEC 167933117 + 167933097 167933137 41 AAATCAGATGGAGGTTATACCTATGATACATCTGACCTGGC AAATCAGATGGAGGTTATACCTATGGTACATCTGACCTGGC < 41bp 1 0.52421466118186 1 0.323232203722 experiment 0.95157067763628 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167933117 chr5:167933122 nonsynonymous SNV 0.999 3 26 hm5C_associated_SNPs_44743 0 0 1 0 2 Nucleus 1 0.500231643884556 1 0.999536712230888 hm5C_site_43597 DeepMRMD:1;iRNA_m5C:0.999536712230888 43598 chr11 17331199 17331199 1 + G T UCEC 17331183 + 17331163 17331203 41 CTAAACCACCTGAATCCTGACAAGTTTGAATCCACAGATTT CTAAACCACCTGAATCCTGACAAGTTTGAATCCACATATTT < 41bp 1 0.395655044804018 1 0.0814482569694519 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17331183 chr11:17331199 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_44745 0 0 0 0 2 Ribosome 1 0.50018993750186 1 0.999620124996281 hm5C_site_43598 DeepMRMD:1;iRNA_m5C:0.999620124996281 43599 chr1 57157092 57157092 1 + G T UCEC 57157082 + 57157062 57157102 41 AAAAGATACCAGGTGATCAGCACTCCAACAGATTTTTTTAT AAAAGATACCAGGTGATCAGCACTCCAACATATTTTTTTAT < 41bp 1 0.0420566188565077 1 0.0945472419261932 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57157082 chr1:57157092 nonsynonymous SNV 0.999 4 31 hm5C_associated_SNPs_44746 0 0 1 0 2 Endoplasmic reticulum 1 0.500231411094726 1 0.999537177810548 hm5C_site_43599 DeepMRMD:1;iRNA_m5C:0.999537177810548 43600 chr12 69128526 69128526 1 + G T UCEC 69128531 + 69128511 69128551 41 GTGGTTTAAGCATATGAATTCAGTTCCACAAAAACCTGCTT GTGGTTTAAGCATATTAATTCAGTTCCACAAAAACCTGCTT < 41bp 1 0.182317101019039 1 0.496727705001831 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69128531 chr12:69128526 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_44747 0 0 1 0 2 chromatin 1 0.500223279814136 1 0.999553440371729 hm5C_site_43600 DeepMRMD:1;iRNA_m5C:0.999553440371729 43601 chr12 53776175 53776175 1 + T C UCEC 53776180 + 53776160 53776200 41 TGGTGGGCAGTATGTTGTGGCTGCCGCTCCCAACTTACAGA TGGTGGGCAGTATGTCGTGGCTGCCGCTCCCAACTTACAGA < 41bp 1 0.226882979464354 1 0.0362419784069061 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SP1 ENSG00000185591 CDS Human protein_coding chr12:53776180 chr12:53776175 synonymous SNV . 0 16 hm5C_associated_SNPs_44748 0 0 1 0 0 Nucleus 1 0.500231643920788 1 0.999536712158423 hm5C_site_43601 DeepMRMD:1;iRNA_m5C:0.999536712158423 43602 chr2 118579617 118579617 1 + C T UCEC 118579611 + 118579591 118579631 41 TCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCAT TCAACATCATTGTGGCCACACCAGGCTGTCTGCTGGACCAT < 41bp 1 0.591283539177205 1 0.10666686296463 experiment 0.817432921645591 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579611 chr2:118579617 nonsynonymous SNV 0.990 4 27 hm5C_associated_SNPs_44749 0 0 1 0 1 Nucleus 1 0.50023165038892 1 0.99953669922216 hm5C_site_43602 DeepMRMD:1;iRNA_m5C:0.99953669922216 43603 chr16 675480 675480 1 + A G UCEC 675485 + 675465 675505 41 TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCGA TGGTCCTTTGACGGCGTCGACCGCTGGATCAAGGAGATCGA < 41bp 1 0.207163660734217 1 0.277953714132309 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675485 chr16:675480 nonsynonymous SNV 0.993 1 16 hm5C_associated_SNPs_44750 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_43603 DeepMRMD:1;iRNA_m5C:0.999536712157815 43604 chrX 114856667 114856667 1 + G A UCEC 114856664 + 114856644 114856684 41 AGAGAAATTATTCAGAAACTCATGCTGGATGGTGACAGGAA AGAGAAATTATTCAGAAACTCATACTGGATGGTGACAGGAA < 41bp 1 0.129450974330362 1 0.118164718151093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856664 chrX:114856667 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_44752 0 0 1 2 1 Nucleus 1 0.500231647807934 1 0.999536704384131 hm5C_site_43604 DeepMRMD:1;iRNA_m5C:0.999536704384131 43605 chr22 40666239 40666239 1 + G T UCEC 40666231 + 40666211 40666251 41 GATGGATGATACAGGAGCATCGACCACAGGCTGGGGGAACA GATGGATGATACAGGAGCATCGACCACATGCTGGGGGAACA < 41bp 1 0.119990868285782 1 0.181181997060776 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TNRC6B ENSG00000100354 CDS Human protein_coding chr22:40666231 chr22:40666239 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_44754 0 0 0 0 1 Cytosol 1 0.500234739437424 1 0.999530521125152 hm5C_site_43605 DeepMRMD:1;iRNA_m5C:0.999530521125152 43606 chr1 182827337 182827337 1 + G T UCEC 182827338 + 182827318 182827358 41 CCATCTTGGAGTGGTTGAAGCTTACTCCGGACTTACAAAGA CCATCTTGGAGTGGTTGAATCTTACTCCGGACTTACAAAGA < 41bp 1 0.273926662093661 1 0.273489624261856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827338 chr1:182827337 nonsynonymous SNV 0.999 0 20 hm5C_associated_SNPs_44756 0 0 1 0 2 Cytosol 1 0.500231643905394 1 0.999536712189212 hm5C_site_43606 DeepMRMD:1;iRNA_m5C:0.999536712189212 43607 chr1 182827337 182827337 1 + G T UCEC 182827349 + 182827329 182827369 41 TGGTTGAAGCTTACTCCGGACTTACAAAGAAGAAGGAAGGA TGGTTGAATCTTACTCCGGACTTACAAAGAAGAAGGAAGGA < 41bp 1 0.0522472902949628 1 0.0626658797264099 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DHX9 ENSG00000135829 CDS Human protein_coding chr1:182827349 chr1:182827337 nonsynonymous SNV 0.999 0 9 hm5C_associated_SNPs_44758 0 0 1 0 2 Cytosol 1 0.500231643921705 1 0.999536712156591 hm5C_site_43607 DeepMRMD:1;iRNA_m5C:0.999536712156591 43608 chr17 47119679 47119679 1 + C T UCEC 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CATCGAGAATTGTTGCAGGGCTGAGCAGGAAATAATGAAGA < 41bp 1 0.313630551759634 1 0.199812978506088 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119679 synonymous SNV . 0 22 hm5C_associated_SNPs_44759 0 0 1 0 1 Ribosome 1 0.500231644374344 1 0.999536711251312 hm5C_site_43608 DeepMRMD:1;iRNA_m5C:0.999536711251312 43609 chr20 60882779 60882779 1 + G T UCEC 60882762 + 60882742 60882782 41 AGCAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAG AGCAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATTGAG < 41bp 1 0.271635478217094 1 0.487201929092407 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882762 chr20:60882779 stopgain 0.784 0 38 hm5C_associated_SNPs_44760 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43609 DeepMRMD:1;iRNA_m5C:0.999536712157815 43610 chr20 60882779 60882779 1 + G T UCEC 60882764 + 60882744 60882784 41 CAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATGGAGCC CAACTAGCCCGAGCCCCGCGCCCAGTTCCGGGAATTGAGCC < 41bp 1 0.222550277484736 1 0.531945407390594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60882764 chr20:60882779 stopgain 0.784 0 36 hm5C_associated_SNPs_44761 0 0 1 0 0 Ribosome 1 0.500231643921092 0.936109185218812 0.999536712157815 hm5C_site_43610 DeepMRMD:0.936109185218812;iRNA_m5C:0.999536712157815 43611 chr16 5127982 5127982 1 + T C UCEC 5128001 + 5127981 5128021 41 ATGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA ACGAAGCTGGGCAGCATGCACTCTCCGTTCAGGGCCCGGTA < 41bp 1 0.363790116679149 1 0.0819019973278046 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5128001 chr16:5127982 nonsynonymous SNV 0.967 1 2 hm5C_associated_SNPs_44762 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_43611 DeepMRMD:1;iRNA_m5C:0.999536712157816 43612 chr11 58959632 58959632 1 + C T UCEC 58959625 + 58959605 58959645 41 CCTCAGGCTACAAGGGCCCGCAGCCTACGGTAAAACCTGAC CCTCAGGCTACAAGGGCCCGCAGCCTATGGTAAAACCTGAC < 41bp 1 0.217786576721329 1 0.449804335832596 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX4 ENSG00000110042 CDS Human protein_coding chr11:58959625 chr11:58959632 nonsynonymous SNV 0.427 0 28 hm5C_associated_SNPs_44763 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43612 DeepMRMD:1;iRNA_m5C:0.999536712157815 43613 chr6 26597212 26597212 1 + T C UCEC 26597193 + 26597173 26597213 41 GGCACTTTACGGCCGTCGTGCCGCTCGTGTCAGTCAACATG GGCACTTTACGGCCGTCGTGCCGCTCGTGTCAGTCAACACG < 41bp 1 0.222542461136726 1 0.0633856356143951 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ABT1 ENSG00000146109 CDS Human protein_coding chr6:26597193 chr6:26597212 nonsynonymous SNV 0.035 1 40 hm5C_associated_SNPs_44764 0 0 1 0 0 Ribosome 1 0.500231643920499 1 0.999536712159002 hm5C_site_43613 DeepMRMD:1;iRNA_m5C:0.999536712159002 43614 chr6 26597212 26597212 1 + T C UCEC 26597203 + 26597183 26597223 41 GGCCGTCGTGCCGCTCGTGTCAGTCAACATGGAGGCAGAGG GGCCGTCGTGCCGCTCGTGTCAGTCAACACGGAGGCAGAGG < 41bp 1 0.410160953334118 1 0.413780629634857 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABT1 ENSG00000146109 CDS Human protein_coding chr6:26597203 chr6:26597212 nonsynonymous SNV 0.035 1 30 hm5C_associated_SNPs_44765 0 0 1 0 0 Ribosome 1 0.500240461192645 1 0.999519077614709 hm5C_site_43614 DeepMRMD:1;iRNA_m5C:0.999519077614709 43615 chr16 23700963 23700963 1 + T C UCEC 23700976 + 23700956 23700996 41 CTGCACCTCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA CTGCACCCCAGCAACGGCAGCGTGCAGATCAACTTCTTCCA < 41bp 1 0.179064977470362 1 0.271413087844849 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700976 chr16:23700963 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_44766 0 0 1 0 1 Ribosome 1 0.500231631647443 1 0.999536736705114 hm5C_site_43615 DeepMRMD:1;iRNA_m5C:0.999536736705114 43616 chr9 130551717 130551717 1 + C T UCEC 130551725 + 130551705 130551745 41 CATGTTCGAGTACTTGGCACCACCGCGCCGGAAGGGCAGCC CATGTTCGAGTATTTGGCACCACCGCGCCGGAAGGGCAGCC < 41bp 1 0.5190471281736 1 0.297393143177032 experiment 0.961905743652799 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDK9 ENSG00000136807 CDS Human protein_coding chr9:130551725 chr9:130551717 synonymous SNV . 0 13 hm5C_associated_SNPs_44767 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921109 1 0.999536712157783 hm5C_site_43616 DeepMRMD:1;iRNA_m5C:0.999536712157783 43617 chr10 24817012 24817012 1 + A C UCEC 24816992 + 24816972 24817012 41 ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAA ACCAAATCTGGAGATGCCGCCAGCCACAGGCCCACTGCCAC < 41bp 1 0.24239318377706 1 0.683932304382324 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24816992 chr10:24817012 synonymous SNV . 0 41 hm5C_associated_SNPs_44768 0 0 1 0 1 Nucleus 1 0.500231665166845 0.632135391235352 0.999536669666309 hm5C_site_43617 DeepMRMD:0.632135391235352;iRNA_m5C:0.999536669666309 43618 chr19 44341227 44341227 1 + T C UCEC 44341234 + 44341214 44341254 41 ACATTCAGGGATGTGGCCATCGACTTCTCTCAGGAGGAGTG ACATTCAGGGATGCGGCCATCGACTTCTCTCAGGAGGAGTG < 41bp 1 0.543665926738198 1 0.123779892921448 experiment 0.912668146523603 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44341234 chr19:44341227 nonsynonymous SNV 1.000 3 14 hm5C_associated_SNPs_44769 0 0 1 0 1 Nucleus 1 0.500231647163922 1 0.999536705672155 hm5C_site_43618 DeepMRMD:1;iRNA_m5C:0.999536705672155 43619 chr2 219269107 219269107 1 + G C UCEC 219269106 + 219269086 219269126 41 GAGCAACTCAGCCGTGTGGACGACGTGTACTCAGTGCTCAG GAGCAACTCAGCCGTGTGGACCACGTGTACTCAGTGCTCAG < 41bp 1 0.302861416634103 1 0.0619842112064362 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219269106 chr2:219269107 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_44770 0 0 1 0 1 Cytosol 1 0.50023164712435 1 0.9995367057513 hm5C_site_43619 DeepMRMD:1;iRNA_m5C:0.9995367057513 43620 chr16 82891985 82891985 1 + G A UCEC 82891983 + 82891963 82892003 41 TCAGGTGCTGCTGCTAACATCTGCAGAAGATTTGGACTGCA TCAGGTGCTGCTGCTAACATCTACAGAAGATTTGGACTGCA < 41bp 1 0.4864694284235 1 0.775429725646973 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:82891983 chr16:82891985 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_44771 0 0 0 0 2 Nucleus 1 0.500231040523951 0.449140548706054 0.999537918952099 hm5C_site_43620 DeepMRMD:0.449140548706054;iRNA_m5C:0.999537918952099 43621 chr11 119054003 119054003 1 + G A UCEC 119054023 + 119054003 119054043 41 GGGTTCAGCGACACCTTGAGCTCCTACTGCGGGATCTGGAA AGGTTCAGCGACACCTTGAGCTCCTACTGCGGGATCTGGAA < 41bp 1 0.305798296700819 1 0.0917831659317017 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119054023 chr11:119054003 nonsynonymous SNV 0.562 4 1 hm5C_associated_SNPs_44772 0 0 0 0 0 exosome 1 0.500231643927421 1 0.999536712145157 hm5C_site_43621 DeepMRMD:1;iRNA_m5C:0.999536712145157 43622 chr2 170735045 170735045 1 + C T UCEC 170735039 + 170735019 170735059 41 TTCTTCTCCTCCAAAGGTTTCATAGGCGCAACAGGAACTTT TTCTTCTCCTCCAAAGGTTTCATAGGTGCAACAGGAACTTT < 41bp 1 0.130958122033692 1 0.108347564935684 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170735039 chr2:170735045 synonymous SNV . 0 27 hm5C_associated_SNPs_44773 0 0 1 0 2 Cytosol 1 0.500231644485366 1 0.999536711029268 hm5C_site_43622 DeepMRMD:1;iRNA_m5C:0.999536711029268 43623 chr2 10560063 10560063 1 + C T UCEC 10560051 + 10560031 10560071 41 AAGATCTACGCCAACTTCTTCCCCTACGGCGACGCTTCCAA AAGATCTACGCCAACTTCTTCCCCTACGGCGATGCTTCCAA < 41bp 1 0.106333272902863 1 0.316024303436279 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10560051 chr2:10560063 synonymous SNV . 0 33 hm5C_associated_SNPs_44775 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43623 DeepMRMD:1;iRNA_m5C:0.999536712157815 43624 chr1 43893267 43893267 1 + G A UCEC 43893251 + 43893231 43893271 41 CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGCGTCAG CACCATTCCGTCGAGACTTACAGGCTTACGCTGGGCATCAG < 41bp 1 0.276819355137698 1 0.874479651451111 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43893251 chr1:43893267 nonsynonymous SNV 0.979 0 37 hm5C_associated_SNPs_44776 0 0 1 0 1 Cytosol 1 0.500231643920774 0.251040697097778 0.999536712158452 hm5C_site_43624 DeepMRMD:0.251040697097778;iRNA_m5C:0.999536712158452 43625 chr2 74326575 74326575 1 + G A UCEC 74326589 + 74326569 74326609 41 TCCCCCGCGAGGTCCGACGCCTGCCCGAGCCTGCCAAGTCC TCCCCCACGAGGTCCGACGCCTGCCCGAGCCTGCCAAGTCC < 41bp 1 0.315754497846388 1 0.0595697164535522 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74326589 chr2:74326575 nonsynonymous SNV 0.982 3 7 hm5C_associated_SNPs_44777 0 0 1 0 0 Cytosol 1 0.500233263992769 1 0.999533472014463 hm5C_site_43625 DeepMRMD:1;iRNA_m5C:0.999533472014463 43626 chr19 30164904 30164904 1 + G A UCEC 30164884 + 30164864 30164904 41 GGCGTGCTGACCAAAGAGTGCCGCAAGAAGGCCAAGCCGCG GGCGTGCTGACCAAAGAGTGCCGCAAGAAGGCCAAGCCGCA < 41bp 1 0.299791487512022 1 0.0943288803100586 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLEKHF1 ENSG00000166289 CDS Human protein_coding chr19:30164884 chr19:30164904 nonsynonymous SNV 0.976 4 41 hm5C_associated_SNPs_44778 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43626 DeepMRMD:1;iRNA_m5C:0.999536712157815 43627 chr7 99956338 99956338 1 + C T UCEC 99956353 + 99956333 99956373 41 CCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTCTC CCAAGTTACCTTTATGGGGTCACTCAACCAAAACACCTCTC < 41bp 1 0.0826121949935841 1 0.0295203626155853 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956353 chr7:99956338 synonymous SNV . 0 6 hm5C_associated_SNPs_44779 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43627 DeepMRMD:1;iRNA_m5C:0.999536712157815 43628 chr11 66627364 66627364 1 + G A UCEC 66627381 + 66627361 66627401 41 GTGGCCTTGCTGGTTCGGGGCCGGGGGGCCGGAAATGGCCG GTGACCTTGCTGGTTCGGGGCCGGGGGGCCGGAAATGGCCG < 41bp 1 0.620250633084993 1 0.762015461921692 experiment 0.759498733830013 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627381 chr11:66627364 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_44780 0 0 1 0 0 Ribosome 1 0.500231643921102 0.475969076156616 0.999536712157796 hm5C_site_43628 DeepMRMD:0.475969076156616;iRNA_m5C:0.999536712157796 43629 chrX 153696899 153696899 1 + G A UCEC 153696889 + 153696869 153696909 41 AGAGCAAGAACCACCCCAAGCTGCTGCTACGCAGGTACCTG AGAGCAAGAACCACCCCAAGCTGCTGCTACACAGGTACCTG < 41bp 1 0.274896289270132 1 0.129401087760925 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696889 chrX:153696899 nonsynonymous SNV 0.973 4 31 hm5C_associated_SNPs_44781 0 0 0 0 1 Endoplasmic reticulum 1 0.50023149681016 1 0.99953700637968 hm5C_site_43629 DeepMRMD:1;iRNA_m5C:0.99953700637968 43630 chr2 98263847 98263847 1 + C T UCEC 98263858 + 98263838 98263878 41 CTTCAGGCACCAGGGAAGACCCTAATTTAGTCCCCTCCATC CTTCAGGCATCAGGGAAGACCCTAATTTAGTCCCCTCCATC < 41bp 1 0.30617187527368 1 0.0501925945281982 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control COX5B ENSG00000135940 CDS Human protein_coding chr2:98263858 chr2:98263847 nonsynonymous SNV 0.998 4 10 hm5C_associated_SNPs_44782 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43630 DeepMRMD:1;iRNA_m5C:0.999536712157815 43631 chr1 155583268 155583268 1 + G A UCEC 155583273 + 155583253 155583293 41 CCAGCTCACCCCAGGGACACCTCCACCCTCTGCCCTTCATG CCAGCTCACCCCAGGAACACCTCCACCCTCTGCCCTTCATG < 41bp 1 0.660804023765386 1 0.857155561447144 experiment 0.678391952469228 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155583273 chr1:155583268 synonymous SNV . 0 16 hm5C_associated_SNPs_44783 0 0 0 0 3 Ribosome 1 0.500231643921093 0.285688877105712 0.999536712157814 hm5C_site_43631 DeepMRMD:0.285688877105712;iRNA_m5C:0.999536712157814 43632 chrX 64956747 64956747 1 + G T UCEC 64956736 + 64956716 64956756 41 TTGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG TTGAACGGGAGAAGGAGGAGCTGATGGAGAGTCTGAAGCAG < 41bp 1 0.393441401839894 1 0.319944083690643 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956736 chrX:64956747 nonsynonymous SNV 0.994 2 32 hm5C_associated_SNPs_44785 0 0 1 0 2 Ribosome 1 0.500231643920992 1 0.999536712158015 hm5C_site_43632 DeepMRMD:1;iRNA_m5C:0.999536712158015 43633 chr10 43971256 43971256 1 + G T UCEC 43971248 + 43971228 43971268 41 GGACTCTGCTCAGAGGACCCCGTACAGAGACATGATGCTGG GGACTCTGCTCAGAGGACCCCGTACAGATACATGATGCTGG < 41bp 1 0.369368529406463 1 0.369012057781219 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971248 chr10:43971256 nonsynonymous SNV . 0 29 hm5C_associated_SNPs_44786 0 0 0 0 2 exosome 1 0.500237307794394 1 0.999525384411212 hm5C_site_43633 DeepMRMD:1;iRNA_m5C:0.999525384411212 43634 chr14 37754622 37754622 1 + G A UCEC 37754619 + 37754599 37754639 41 GGAGAGAGATGAAGCAATTGCACGAGCCAAGCATATGGAAA GGAGAGAGATGAAGCAATTGCACAAGCCAAGCATATGGAAA < 41bp 1 0.306157351703745 1 0.33117488026619 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37754619 chr14:37754622 nonsynonymous SNV 0.872 0 24 hm5C_associated_SNPs_44787 0 0 1 0 1 chromatin 1 0.500231642353411 1 0.999536715293178 hm5C_site_43634 DeepMRMD:1;iRNA_m5C:0.999536715293178 43635 chr15 75949310 75949310 1 + C T UCEC 75949304 + 75949284 75949324 41 TCTGCTCTGCCTATGCCAGGCGCCTTCGCCAAGGTGAAGGA TCTGCTCTGCCTATGCCAGGCGCCTTTGCCAAGGTGAAGGA < 41bp 1 0.450695332254601 1 0.181981831789017 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNX33 ENSG00000173548 CDS Human protein_coding chr15:75949304 chr15:75949310 synonymous SNV . 0 27 hm5C_associated_SNPs_44788 0 0 1 0 1 membrane 1 0.500231659816762 1 0.999536680366475 hm5C_site_43635 DeepMRMD:1;iRNA_m5C:0.999536680366475 43636 chr5 65349751 65349751 1 + A C UCEC 65349734 + 65349714 65349754 41 CTCCCCTCAGAAAAGTGGTCCAGTTGGATCTGTTGTGAAAT CTCCCCTCAGAAAAGTGGTCCAGTTGGATCTGTTGTGCAAT < 41bp 1 0.0691277423169064 1 0.0800723433494568 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ERBIN ENSG00000112851 CDS Human protein_coding chr5:65349734 chr5:65349751 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_44789 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43636 DeepMRMD:1;iRNA_m5C:0.999536712157815 43637 chr12 78520976 78520976 1 + A C UCEC 78520959 + 78520939 78520979 41 TTTAACAGCATGCAGCTTGACAGAAATACACTACCCAAAAA TTTAACAGCATGCAGCTTGACAGAAATACACTACCCACAAA < 41bp 1 0.434158822633706 1 0.231643617153168 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NAV3 ENSG00000067798 CDS Human protein_coding chr12:78520959 chr12:78520976 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_44790 0 0 0 0 2 Nucleus 1 0.500228728647795 1 0.999542542704409 hm5C_site_43637 DeepMRMD:1;iRNA_m5C:0.999542542704409 43638 chr2 48027751 48027751 1 + G A UCEC 48027758 + 48027738 48027778 41 AGGGATCATGGAAGAAGTTGCTGATGGTTTTAAGTCTAAAA AGGGATCATGGAAAAAGTTGCTGATGGTTTTAAGTCTAAAA < 41bp 1 0.221454324477542 1 0.0498495995998383 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MSH6 ENSG00000116062 CDS Human protein_coding chr2:48027758 chr2:48027751 nonsynonymous SNV 0.690 1 14 hm5C_associated_SNPs_44791 1 0 1 0 0 Nucleus 1 0.500231701393141 1 0.999536597213718 hm5C_site_43638 DeepMRMD:1;iRNA_m5C:0.999536597213718 not specified not specified 43639 chr1 32620273 32620273 1 + G T UCEC 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAT < 41bp 1 0.190475095376351 1 0.119779229164124 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620273 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_44792 0 0 1 0 2 Cytosol 1 0.500231643933624 1 0.999536712132753 hm5C_site_43639 DeepMRMD:1;iRNA_m5C:0.999536712132753 43640 chr1 32620273 32620273 1 + G T UCEC 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAATA < 41bp 1 0.28977049477 1 0.308539927005768 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620273 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44793 0 0 1 0 2 Cytosol 1 0.500231679731975 1 0.99953664053605 hm5C_site_43640 DeepMRMD:1;iRNA_m5C:0.99953664053605 43641 chr15 29346703 29346703 1 + G A UCEC 29346702 + 29346682 29346722 41 GAGGAGGCCAACGGGAACACCGGCGCCTCCCCCTACCGCCT GAGGAGGCCAACGGGAACACCAGCGCCTCCCCCTACCGCCT < 41bp 1 0.680997579542155 1 0.691118240356445 experiment 0.63800484091569 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control APBA2 ENSG00000034053 CDS Human protein_coding chr15:29346702 chr15:29346703 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_44794 0 0 1 0 0 Cytosol 1 0.500231643921093 0.61776351928711 0.999536712157815 hm5C_site_43641 DeepMRMD:0.61776351928711;iRNA_m5C:0.999536712157815 43642 chrX 73044917 73044917 1 + G T UCEC 73044935 - 73044915 73044955 41 ATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTATTCTC ATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTATTATC < 41bp 1 0.3450179773207 1 0.788606584072113 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044935 chrX:73044917 . . 0 39 hm5C_associated_SNPs_44796 0 0 1 1 0 unknown 1 0.500231643974046 0.422786831855774 0.999536712051907 hm5C_site_43642 DeepMRMD:0.422786831855774;iRNA_m5C:0.999536712051907 43643 chr4 166408640 166408640 1 + G A UCEC 166408636 + 166408616 166408656 41 AGCAACTGTTTTGAGATCACCGTGGAGCTTAGCTGTGAGAA AGCAACTGTTTTGAGATCACCGTGAAGCTTAGCTGTGAGAA < 41bp 1 0.639866595740418 1 0.612635791301727 experiment 0.720266808519164 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CPE ENSG00000109472 CDS Human protein_coding chr4:166408636 chr4:166408640 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_44797 0 0 1 0 2 Ribosome 1 0.50023164427697 0.774728417396546 0.999536711446061 hm5C_site_43643 DeepMRMD:0.774728417396546;iRNA_m5C:0.999536711446061 43644 chr15 52356227 52356227 1 + G A UCEC 52356223 + 52356203 52356243 41 AAGAAGAAGTACAAGTTGATCCCCGAAAATATTTGGATGGA AAGAAGAAGTACAAGTTGATCCCCAAAAATATTTGGATGGA < 41bp 1 0.661708308208647 1 0.401182740926743 experiment 0.676583383582706 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356223 chr15:52356227 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_44798 0 0 1 0 0 Ribosome 1 0.500231643966611 1 0.999536712066778 hm5C_site_43644 DeepMRMD:1;iRNA_m5C:0.999536712066778 43645 chr15 52356227 52356227 1 + G A UCEC 52356225 + 52356205 52356245 41 GAAGAAGTACAAGTTGATCCCCGAAAATATTTGGATGGAGA GAAGAAGTACAAGTTGATCCCCAAAAATATTTGGATGGAGA < 41bp 1 0.349806834377434 1 0.414545893669128 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356225 chr15:52356227 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_44799 0 0 1 0 0 Ribosome 1 0.500231643670496 1 0.999536712659008 hm5C_site_43645 DeepMRMD:1;iRNA_m5C:0.999536712659008 43646 chr15 52356227 52356227 1 + G A UCEC 52356226 + 52356206 52356246 41 AAGAAGTACAAGTTGATCCCCGAAAATATTTGGATGGAGAT AAGAAGTACAAGTTGATCCCCAAAAATATTTGGATGGAGAT < 41bp 1 0.520584140703735 1 0.445899873971939 experiment 0.958831718592531 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356226 chr15:52356227 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_44800 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43646 DeepMRMD:1;iRNA_m5C:0.999536712157815 43647 chr15 57545617 57545617 1 + C A UCEC 57545632 + 57545612 57545652 41 CAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC CAATTAAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC < 41bp 1 0.229444572456626 1 0.356426477432251 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57545632 chr15:57545617 stopgain 1.000 0 6 hm5C_associated_SNPs_44801 0 0 1 0 1 Cytosol 1 0.5002360169508 1 0.999527966098401 hm5C_site_43647 DeepMRMD:1;iRNA_m5C:0.999527966098401 43648 chr15 81173443 81173443 1 + G A UCEC 81173448 + 81173428 81173468 41 ATTGTTCATGTCATCGACCCCAAATCAGGCACAGTCATCCA ATTGTTCATGTCATCAACCCCAAATCAGGCACAGTCATCCA < 41bp 1 0.125273406164073 1 0.126383244991302 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81173448 chr15:81173443 nonsynonymous SNV 0.132 0 16 hm5C_associated_SNPs_44802 0 0 0 0 1 Nucleus 1 0.500229880313349 1 0.999540239373301 hm5C_site_43648 DeepMRMD:1;iRNA_m5C:0.999540239373301 43649 chr10 24832559 24832559 1 + C T UCEC 24832548 + 24832528 24832568 41 GATCATCATTTTCGATGAGCCCATGGACATCCGGTCTGCCT GATCATCATTTTCGATGAGCCCATGGACATCTGGTCTGCCT < 41bp 1 0.101632049375973 1 0.0776600539684296 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24832548 chr10:24832559 nonsynonymous SNV 0.915 4 32 hm5C_associated_SNPs_44803 0 0 0 0 0 Nucleus 1 0.500231560694247 1 0.999536878611506 hm5C_site_43649 DeepMRMD:1;iRNA_m5C:0.999536878611506 43650 chr2 189873885 189873885 1 + C A UCEC 189873898 + 189873878 189873918 41 GATGGTTCTCGTAAAAACCCCGCTAGAAACTGCAGAGACCT GATGGTTATCGTAAAAACCCCGCTAGAAACTGCAGAGACCT < 41bp 1 0.339520034568657 1 0.152199298143387 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189873898 chr2:189873885 nonsynonymous SNV 0.981 3 8 hm5C_associated_SNPs_44804 0 0 0 0 1 Endoplasmic reticulum 1 0.50022986255857 1 0.999540274882859 hm5C_site_43650 DeepMRMD:1;iRNA_m5C:0.999540274882859 43651 chr14 71434938 71434938 1 + T C UCEC 71434922 + 71434902 71434942 41 GTCACGTTTTCAGATTGGATCTGGTTCCTCGCGTCTTGGAA GTCACGTTTTCAGATTGGATCTGGTTCCTCGCGTCTCGGAA < 41bp 1 0.184662361078267 1 0.53335964679718 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71434922 chr14:71434938 synonymous SNV . 0 37 hm5C_associated_SNPs_44805 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921086 0.93328070640564 0.999536712157828 hm5C_site_43651 DeepMRMD:0.93328070640564;iRNA_m5C:0.999536712157828 43652 chr3 39152437 39152437 1 + C T UCEC 39152446 + 39152426 39152466 41 TTTTCCTCTGGCTCATAGGCCGCCATGACAAGGCCAAAGAG TTTTCCTCTGGTTCATAGGCCGCCATGACAAGGCCAAAGAG < 41bp 1 0.668594743536576 1 0.380758047103882 experiment 0.662810512926849 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TTC21A ENSG00000168026 CDS Human protein_coding chr3:39152446 chr3:39152437 nonsynonymous SNV 0.749 0 12 hm5C_associated_SNPs_44806 0 0 0 0 2 nucleus 1 0.500231643921426 1 0.999536712157148 hm5C_site_43652 DeepMRMD:1;iRNA_m5C:0.999536712157148 43653 chrX 73044918 73044918 1 + A C UCEC 73044935 - 73044915 73044955 41 ATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTATTCTC ATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTATGCTC < 41bp 1 0.434306882364567 1 0.847711741924286 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044935 chrX:73044918 . . 0 38 hm5C_associated_SNPs_44807 0 0 1 1 0 unknown 1 0.500231643921195 0.304576516151428 0.99953671215761 hm5C_site_43653 DeepMRMD:0.304576516151428;iRNA_m5C:0.99953671215761 43654 chr1 39823355 39823355 1 + G T UCEC 39823346 + 39823326 39823366 41 AACATGCATAAGGGAGGCAGCAGCCCCGAGACCCTTCCCTC AACATGCATAAGGGAGGCAGCAGCCCCGATACCCTTCCCTC < 41bp 1 0.147983129408228 1 0.456562668085098 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39823346 chr1:39823355 nonsynonymous SNV 0.290 1 30 hm5C_associated_SNPs_44808 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_43654 DeepMRMD:1;iRNA_m5C:0.999536712157816 43655 chr12 104332150 104332150 1 + A G UCEC 104332136 + 104332116 104332156 41 AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAAGAAGCA AGACTGAAACTGTTGAGGAGCCCATGGAGGAAGAGGAAGCA < 41bp 1 0.1187570115198 1 0.0831471681594849 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104332136 chr12:104332150 synonymous SNV . 0 35 hm5C_associated_SNPs_44809 0 0 1 0 3 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_43655 DeepMRMD:1;iRNA_m5C:0.999536712157814 43656 chr19 8321901 8321901 1 + C T UCEC 8321902 + 8321882 8321922 41 CCTTCTCCTACAGTGCCAACCTGCTGCGCATTGGCTCTCTG CCTTCTCCTACAGTGCCAATCTGCTGCGCATTGGCTCTCTG < 41bp 1 0.554165372749432 1 0.485648810863495 experiment 0.891669254501135 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321902 chr19:8321901 synonymous SNV . 0 20 hm5C_associated_SNPs_44810 0 0 0 0 2 chromatin 1 0.500231617987534 1 0.999536764024932 hm5C_site_43656 DeepMRMD:1;iRNA_m5C:0.999536764024932 43657 chr4 187122468 187122468 1 + G A UCEC 187122449 + 187122429 187122469 41 CTGATGACGAAGGGAACAGGCTAAGTCATGAAGATATTCGA CTGATGACGAAGGGAACAGGCTAAGTCATGAAGATATTCAA < 41bp 1 0.465770522013726 1 0.0917392671108246 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187122449 chr4:187122468 nonsynonymous SNV 0.939 1 40 hm5C_associated_SNPs_44811 0 0 1 0 1 Nucleus 1 0.500231643925013 1 0.999536712149974 hm5C_site_43657 DeepMRMD:1;iRNA_m5C:0.999536712149974 43658 chrX 9661229 9661229 1 + T C UCEC 9661244 + 9661224 9661264 41 CGGTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG CGGTTCTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTG < 41bp 1 0.46962320625562 1 0.220736593008041 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661244 chrX:9661229 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_44812 0 0 1 0 2 Cytosol 1 0.500231586788654 1 0.999536826422692 hm5C_site_43658 DeepMRMD:1;iRNA_m5C:0.999536826422692 43659 chr6 52288760 52288760 1 + G A UCEC 52288769 + 52288749 52288789 41 AGCCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCT AGCCTTCCACAAAAGTCAGACGCTGAGCTACAGGAACGGCT < 41bp 1 0.208207186102591 1 0.335291802883148 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288769 chr6:52288760 nonsynonymous SNV 0.994 1 12 hm5C_associated_SNPs_44814 0 0 0 0 1 Cytosol 1 0.500231501252981 1 0.999536997494039 hm5C_site_43659 DeepMRMD:1;iRNA_m5C:0.999536997494039 43660 chr22 31658762 31658762 1 + G T UCEC 31658771 + 31658751 31658791 41 GGGGACACTGAGGAGACGTTCCCTAAGGTGCCACCTCCCAC GGGGACACTGATGAGACGTTCCCTAAGGTGCCACCTCCCAC < 41bp 1 0.317271212514065 1 0.032497376203537 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658771 chr22:31658762 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_44815 0 0 1 0 1 Cytosol 1 0.500240610309455 1 0.99951877938109 hm5C_site_43660 DeepMRMD:1;iRNA_m5C:0.99951877938109 43661 chr12 94563013 94563013 1 + G A UCEC 94563000 + 94562980 94563020 41 ATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAAT ATCCATTCCGACCTGACATCCGTTTATGGCACCATGGTAAT < 41bp 1 0.0537423904188249 1 0.0526050925254822 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94563000 chr12:94563013 nonsynonymous SNV 0.999 2 34 hm5C_associated_SNPs_44816 0 0 1 0 2 chromatin 1 0.500231642043259 1 0.999536715913483 hm5C_site_43661 DeepMRMD:1;iRNA_m5C:0.999536715913483 43662 chr20 21312442 21312442 1 + T C UCEC 21312451 + 21312431 21312471 41 TCATCATTGTTTATGTGGAGCAGATGGTAAGTTTCTTCTTT TCATCATTGTTCATGTGGAGCAGATGGTAAGTTTCTTCTTT < 41bp 1 0.268151884373648 1 0.0526235699653625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRN2 ENSG00000088930 CDS Human protein_coding chr20:21312451 chr20:21312442 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_44817 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43662 DeepMRMD:1;iRNA_m5C:0.999536712157815 43663 chr15 40269025 40269025 1 + C T UCEC 40269028 + 40269008 40269048 41 GAGGACGAGCACGGTGGCGTCTTCTCCCAGTCCTTCCTGTA GAGGACGAGCACGGTGGTGTCTTCTCCCAGTCCTTCCTGTA < 41bp 1 0.350227552216246 1 0.110062569379807 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40269028 chr15:40269025 synonymous SNV . 0 18 hm5C_associated_SNPs_44818 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_43663 DeepMRMD:1;iRNA_m5C:0.999536712157815 43664 chrX 70517767 70517767 1 + C A UCEC 70517781 + 70517761 70517801 41 AGGATTCAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT AGGATTAAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT < 41bp 1 0.653137936965939 1 0.12215855717659 experiment 0.693724126068121 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517781 chrX:70517767 nonsynonymous SNV 0.999 1 7 hm5C_associated_SNPs_44819 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43664 DeepMRMD:1;iRNA_m5C:0.999536712157815 43665 chr2 55461997 55461997 1 + C T UCEC 55461979 + 55461959 55461999 41 ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGT ATTAACAGGAGTCTACTCTTCATCTTGTGTTGAGACTTTGT < 41bp 1 0.153212388645333 1 0.0407131910324097 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461979 chr2:55461997 nonsynonymous SNV 1.000 1 39 hm5C_associated_SNPs_44820 0 0 1 3 1 Ribosome 1 0.500231643411833 1 0.999536713176335 hm5C_site_43665 DeepMRMD:1;iRNA_m5C:0.999536713176335 43666 chr2 55461997 55461997 1 + C T UCEC 55462007 + 55461987 55462027 41 GTTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT GTTGAGACTTTGTGGTGGTGCTAAGAAAAGGAAGAAGAAGT < 41bp 1 0.410412655487547 1 0.187788993120193 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS27A ENSG00000143947 CDS Human protein_coding chr2:55462007 chr2:55461997 nonsynonymous SNV 1.000 1 11 hm5C_associated_SNPs_44821 0 0 1 3 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_43666 DeepMRMD:1;iRNA_m5C:0.999536712157815 43667 chr11 130013304 130013304 1 + G T UCEC 130013308 + 130013288 130013328 41 AGAACCATGGCTATGAGAACCCCACCTACAAATACCTGGAG AGAACCATGGCTATGATAACCCCACCTACAAATACCTGGAG < 41bp 1 0.178141053563498 1 0.568044781684875 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control APLP2 ENSG00000084234 CDS Human protein_coding chr11:130013308 chr11:130013304 nonsynonymous SNV 0.996 5 17 hm5C_associated_SNPs_44822 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.86391043663025 0.999536712157815 hm5C_site_43667 DeepMRMD:0.86391043663025;iRNA_m5C:0.999536712157815 43668 chr2 169626103 169626103 1 + G A UCEC 169626121 + 169626101 169626141 41 GCGACAACCACCAATGGGACCAGTGGTACCAACGGGTATCT GCAACAACCACCAATGGGACCAGTGGTACCAACGGGTATCT < 41bp 1 0.337729105379097 1 0.17455866932869 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169626121 chr2:169626103 synonymous SNV . 0 3 hm5C_associated_SNPs_44823 0 0 1 0 1 Endoplasmic reticulum 1 0.500231259018247 1 0.999537481963505 hm5C_site_43668 DeepMRMD:1;iRNA_m5C:0.999537481963505 43669 chr10 70723156 70723156 1 + C A UCEC 70723167 + 70723147 70723187 41 GACATTCTCCTTTGCCATCCCTTTGATTGAGAAACTTCATG GACATTCTCATTTGCCATCCCTTTGATTGAGAAACTTCATG < 41bp 1 0.127794527698398 1 0.0656410753726959 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70723167 chr10:70723156 synonymous SNV . 0 10 hm5C_associated_SNPs_44824 0 0 1 0 1 Nucleus 1 0.500231644204153 1 0.999536711591693 hm5C_site_43669 DeepMRMD:1;iRNA_m5C:0.999536711591693 43670 chr7 27827102 27827102 1 + T A UCEC 27827088 + 27827068 27827108 41 CCAAGCTTATGTCAGAGGTCCAGACTTTAAAAAATTTAGAT CCAAGCTTATGTCAGAGGTCCAGACTTTAAAAAAATTAGAT < 41bp 1 0.115160161530281 1 0.342726767063141 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27827088 chr7:27827102 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_44825 0 0 1 0 1 Ribosome 1 0.500231643935938 1 0.999536712128124 hm5C_site_43670 DeepMRMD:1;iRNA_m5C:0.999536712128124 43671 chr4 186244868 186244868 1 + T C UCEC 186244882 + 186244862 186244902 41 CCTTCATTTATTGTCAGTGACCTGTATGAGAAATTGTTGAT CCTTCACTTATTGTCAGTGACCTGTATGAGAAATTGTTGAT < 41bp 1 0.108175453917414 1 0.0949963629245758 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SNX25 ENSG00000109762 CDS Human protein_coding chr4:186244882 chr4:186244868 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_44826 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644159859 1 0.999536711680282 hm5C_site_43671 DeepMRMD:1;iRNA_m5C:0.999536711680282 43672 chr15 69560903 69560903 1 + G A UCEC 69560923 + 69560903 69560943 41 GACAACATTACCATCTCTACCACAGCCCACATGGCTGCATT AACAACATTACCATCTCTACCACAGCCCACATGGCTGCATT < 41bp 1 0.465454733892412 1 0.256128877401352 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GLCE ENSG00000138604 CDS Human protein_coding chr15:69560923 chr15:69560903 nonsynonymous SNV 0.999 3 1 hm5C_associated_SNPs_44827 0 0 1 0 0 Ribosome 1 0.500231495771708 1 0.999537008456584 hm5C_site_43672 DeepMRMD:1;iRNA_m5C:0.999537008456584 43673 chr5 64881996 64881996 1 + G T UCEC 64881981 + 64881961 64882001 41 GGATCAAATACTAATGGATCCCAGTTTTTCATAACGGTAGT GGATCAAATACTAATGGATCCCAGTTTTTCATAACTGTAGT < 41bp 1 0.261085662270545 1 0.207440108060837 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64881981 chr5:64881996 synonymous SNV . 0 36 hm5C_associated_SNPs_44828 0 0 1 0 1 chromatin 1 0.500231643921322 1 0.999536712157356 hm5C_site_43673 DeepMRMD:1;iRNA_m5C:0.999536712157356 43674 chr7 129029014 129029014 1 + G A UCEC 129029013 + 129028993 129029033 41 TCAAACAGGCAGAGTTTGGACGAAGAGAAATTGAAATTGCT TCAAACAGGCAGAGTTTGGACAAAGAGAAATTGAAATTGCT < 41bp 1 0.2396139006122 1 0.213562518358231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129029013 chr7:129029014 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_44829 0 0 1 0 1 chromatin 1 0.500231830047365 1 0.999536339905269 hm5C_site_43674 DeepMRMD:1;iRNA_m5C:0.999536339905269 43675 chr12 53415606 53415606 1 + G T UCEC 53415587 + 53415567 53415607 41 TTAATATGGTCCTATGCTCTCAGTCTCTAGGTAACAGGAGA TTAATATGGTCCTATGCTCTCAGTCTCTAGGTAACAGGATA < 41bp 1 0.117830127920778 1 0.559636116027832 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout EIF4B ENSG00000063046 CDS Human protein_coding chr12:53415587 chr12:53415606 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44830 0 0 1 0 2 Cytosol 1 0.500231643921092 0.880727767944336 0.999536712157815 hm5C_site_43675 DeepMRMD:0.880727767944336;iRNA_m5C:0.999536712157815 43676 chr8 22106596 22106596 1 + T G UCEC 22106604 + 22106584 22106624 41 AAGAGGCCAAGATGAAGGCTCCTCCCAAAGCAGCCAGGAAG AAGAGGCCAAGAGGAAGGCTCCTCCCAAAGCAGCCAGGAAG < 41bp 1 0.023242012754796 1 0.0789967477321625 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POLR3D ENSG00000168495 CDS Human protein_coding chr8:22106604 chr8:22106596 nonsynonymous SNV 0.998 0 13 hm5C_associated_SNPs_44831 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43676 DeepMRMD:1;iRNA_m5C:0.999536712157815 43677 chr2 54871685 54871685 1 + G T UCEC 54871687 + 54871667 54871707 41 TCTGATGACTATGGCAAAGACCTGACCAGTGTCAATATCCT TCTGATGACTATGGCAAATACCTGACCAGTGTCAATATCCT < 41bp 1 0.148466617622676 1 0.0400269031524658 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54871687 chr2:54871685 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_44832 0 0 1 0 0 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_43677 DeepMRMD:1;iRNA_m5C:0.999536712157814 43678 chr5 147585602 147585602 1 + T C UCEC 147585619 + 147585599 147585639 41 GTGTCTTCAGTCAGGGAGGACAGGTCAGTGCCTATTTTTAT GTGCCTTCAGTCAGGGAGGACAGGTCAGTGCCTATTTTTAT < 41bp 1 0.598950609656128 1 0.482435286045074 experiment 0.802098780687744 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SPINK6 ENSG00000178172 CDS Human protein_coding chr5:147585619 chr5:147585602 nonsynonymous SNV 0.990 0 4 hm5C_associated_SNPs_44833 0 0 1 0 2 unknown 1 0.50023164391482 1 0.999536712170359 hm5C_site_43678 DeepMRMD:1;iRNA_m5C:0.999536712170359 43679 chr6 170865981 170865981 1 + C A UCEC 170865967 + 170865947 170865987 41 CTTTAGACTTTTTTCCAAAGCAGCATCACTGTTTCTTGGCG CTTTAGACTTTTTTCCAAAGCAGCATCACTGTTTATTGGCG < 41bp 1 0.433204248084397 1 0.126049101352692 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TBP ENSG00000112592 UTR5 Human protein_coding chr6:170865967 chr6:170865981 . . 0 35 hm5C_associated_SNPs_44834 0 0 1 0 1 Cytosol 1 0.500231643918924 1 0.999536712162152 hm5C_site_43679 DeepMRMD:1;iRNA_m5C:0.999536712162152 43680 chr4 103806586 103806586 1 + C T UCEC 103806576 + 103806556 103806596 41 CAGCTTATTGTAGGTGTTGGCGTTCTAAAACGGTAAGATGT CAGCTTATTGTAGGTGTTGGCGTTCTAAAATGGTAAGATGT < 41bp 1 0.0671182319765818 1 0.477890253067017 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CISD2 ENSG00000145354 CDS Human protein_coding chr4:103806576 chr4:103806586 nonsynonymous SNV 0.991 4 31 hm5C_associated_SNPs_44835 0 0 1 0 1 Ribosome 1 0.500231643904587 1 0.999536712190825 hm5C_site_43680 DeepMRMD:1;iRNA_m5C:0.999536712190825 43681 chr22 41322427 41322427 1 + C T UCEC 41322444 + 41322424 41322464 41 CAGCCAGGCTTCTTGACCTTCACTGCGGCCCACATGCACCT CAGTCAGGCTTCTTGACCTTCACTGCGGCCCACATGCACCT < 41bp 1 0.310356458106417 1 0.324661612510681 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient XPNPEP3 ENSG00000196236 CDS Human protein_coding chr22:41322444 chr22:41322427 synonymous SNV . 0 4 hm5C_associated_SNPs_44836 0 0 1 0 1 Ribosome 1 0.500231493313274 1 0.999537013373453 hm5C_site_43681 DeepMRMD:1;iRNA_m5C:0.999537013373453 43682 chr3 119135075 119135075 1 + A C UCEC 119135071 + 119135051 119135091 41 TTACCAGCCTCAGCGGAGATCAGTAATTCTGGATGGAAGAA TTACCAGCCTCAGCGGAGATCAGTCATTCTGGATGGAAGAA < 41bp 1 0.0506736996281988 1 0.280363202095032 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119135071 chr3:119135075 synonymous SNV . 0 25 hm5C_associated_SNPs_44838 0 0 0 0 0 cytosol 1 0.500231643921177 1 0.999536712157647 hm5C_site_43682 DeepMRMD:1;iRNA_m5C:0.999536712157647 43683 chr20 30898921 30898921 1 + G T UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGATAAA < 41bp 1 0.464369904579788 1 0.249228298664093 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898921 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_44839 0 0 1 0 3 Ribosome 1 0.500232474774504 1 0.999535050450992 hm5C_site_43683 DeepMRMD:1;iRNA_m5C:0.999535050450992 43684 chr6 47576993 47576993 1 + G A UCEC 47576982 + 47576962 47577002 41 AAAAAAATTCCCTGGATGAACTTAGAGCCCAGATTATTGAA AAAAAAATTCCCTGGATGAACTTAGAGCCCAAATTATTGAA < 41bp 1 0.228014490000563 1 0.064485639333725 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47576982 chr6:47576993 synonymous SNV . 0 32 hm5C_associated_SNPs_44840 0 0 1 0 1 Cytosol 1 0.500231644043427 1 0.999536711913145 hm5C_site_43684 DeepMRMD:1;iRNA_m5C:0.999536711913145 43685 chr19 42854409 42854409 1 + C T UCEC 42854425 + 42854405 42854445 41 AGTGCCACCTGCCACCTGCGCCAGGGCGGAGCCCATTGCGG AGTGTCACCTGCCACCTGCGCCAGGGCGGAGCCCATTGCGG < 41bp 1 0.226636296119683 1 0.766969084739685 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42854425 chr19:42854409 nonsynonymous SNV 0.998 0 5 hm5C_associated_SNPs_44841 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.46606183052063 0.999536712157815 hm5C_site_43685 DeepMRMD:0.46606183052063;iRNA_m5C:0.999536712157815 43686 chr5 71648510 71648510 1 + A C UCEC 71648516 + 71648496 71648536 41 TGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGA TGGAAAACCTGATACAGACTCTAAAAAATGCTGCAGAAGGA < 41bp 1 0.462705151963826 1 0.701010763645172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71648516 chr5:71648510 nonsynonymous SNV 0.000 0 15 hm5C_associated_SNPs_44842 0 0 1 3 2 chromatin 1 0.500229637883251 0.597978472709656 0.999540724233498 hm5C_site_43686 DeepMRMD:0.597978472709656;iRNA_m5C:0.999540724233498 43687 chr22 42301560 42301560 1 + G A UCEC 42301542 + 42301522 42301562 41 TCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGCCGAA TCCTCTCCTCCCCGGGCCAGCGGGCAGTGCTGCTGGCCAAA < 41bp 1 0.639338380367889 1 0.840946078300476 experiment 0.721323239264222 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42301542 chr22:42301560 nonsynonymous SNV 0.993 4 39 hm5C_associated_SNPs_44843 0 0 1 0 0 Ribosome 1 0.500231643921092 0.318107843399048 0.999536712157815 hm5C_site_43687 DeepMRMD:0.318107843399048;iRNA_m5C:0.999536712157815 43688 chr1 231401124 231401124 1 + C A UCEC 231401132 + 231401112 231401152 41 TGGCAATAAACTCTACTGGGCTGTATTCTCTGAATATGTAA TGGCAATAAACTATACTGGGCTGTATTCTCTGAATATGTAA < 41bp 1 0.365126492927805 1 0.032417893409729 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401132 chr1:231401124 synonymous SNV . 0 13 hm5C_associated_SNPs_44844 0 0 1 0 2 Cytosol 1 0.50023164400957 1 0.99953671198086 hm5C_site_43688 DeepMRMD:1;iRNA_m5C:0.99953671198086 43689 chr6 47580232 47580232 1 + A C UCEC 47580216 + 47580196 47580236 41 ACTTTGTTTTTAGGAAAGAACTGGAAAAACTGCGAAAAGAT ACTTTGTTTTTAGGAAAGAACTGGAAAAACTGCGAACAGAT < 41bp 1 0.683603703996147 1 0.475735813379288 experiment 0.632792592007705 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47580216 chr6:47580232 nonsynonymous SNV 0.952 0 37 hm5C_associated_SNPs_44845 0 0 1 0 2 Cytosol 1 0.500231616651309 1 0.999536766697382 hm5C_site_43689 DeepMRMD:1;iRNA_m5C:0.999536766697382 43690 chr11 6567270 6567270 1 + G T UCEC 6567288 + 6567268 6567308 41 TGGCACAGGCCCTGGGCCGCCAGCTGGTGATGCTACCCTGC TGTCACAGGCCCTGGGCCGCCAGCTGGTGATGCTACCCTGC < 41bp 1 0.379936995407967 1 0.624374687671661 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control DNHD1 ENSG00000179532 CDS Human protein_coding chr11:6567288 chr11:6567270 nonsynonymous SNV 0.680 3 3 hm5C_associated_SNPs_44846 0 0 0 0 0 chromatin 1 0.500231643919615 0.751250624656678 0.999536712160769 hm5C_site_43690 DeepMRMD:0.751250624656678;iRNA_m5C:0.999536712160769 43691 chr8 48874235 48874235 1 + C A UCEC 48874231 + 48874211 48874251 41 TTTCCAGCCCTCCCCAAATGCATTCTTCAGGTGCGTGTCTG TTTCCAGCCCTCCCCAAATGCATTATTCAGGTGCGTGTCTG < 41bp 1 0.363836781220791 1 0.0387251377105713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874231 chr8:48874235 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_44847 0 0 1 0 1 Cytosol 1 0.500231649070055 1 0.999536701859891 hm5C_site_43691 DeepMRMD:1;iRNA_m5C:0.999536701859891 43692 chr13 21205220 21205220 1 + T C UCEC 21205223 + 21205203 21205243 41 AGTGCAGCTGCAACCAATCTCTCAGCCCTGTATTATATGGT AGTGCAGCTGCAACCAACCTCTCAGCCCTGTATTATATGGT < 41bp 1 0.240878009437356 1 0.36285275220871 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control IFT88 ENSG00000032742 CDS Human protein_coding chr13:21205223 chr13:21205220 synonymous SNV . 0 18 hm5C_associated_SNPs_44848 0 0 0 0 2 Cytosol 1 0.500133155395698 1 0.999733689208604 hm5C_site_43692 DeepMRMD:1;iRNA_m5C:0.999733689208604 43693 chr7 21934387 21934387 1 + A G UCEC 21934397 + 21934377 21934417 41 TTCGGGAAATACGTATATCACTTGAACAACTGGACCTTAGT TTCGGGAAATGCGTATATCACTTGAACAACTGGACCTTAGT < 41bp 1 0.239987466366882 1 0.533310294151306 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21934397 chr7:21934387 nonsynonymous SNV 0.719 0 11 hm5C_associated_SNPs_44849 0 0 0 0 1 nucleolus 1 0.500231643952842 0.933379411697388 0.999536712094317 hm5C_site_43693 DeepMRMD:0.933379411697388;iRNA_m5C:0.999536712094317 43694 chr1 62455902 62455902 1 + G T UCEC 62455922 + 62455902 62455942 41 GATAAGAATGGACTTGGACTCAGCCTTGCTGGTAATAAAGA TATAAGAATGGACTTGGACTCAGCCTTGCTGGTAATAAAGA < 41bp 1 0.198430696165771 1 0.461386680603027 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PATJ ENSG00000132849 CDS Human protein_coding chr1:62455922 chr1:62455902 nonsynonymous SNV 1.000 3 1 hm5C_associated_SNPs_44850 0 0 1 0 1 Nucleus 1 0.500231644412415 1 0.999536711175171 hm5C_site_43694 DeepMRMD:1;iRNA_m5C:0.999536711175171 43695 chr7 100485399 100485399 1 + T C UCEC 100485418 + 100485398 100485438 41 GTTTTTTAACAACTTCCTCACTGATGCTAAGCGCCCAGCTC GCTTTTTAACAACTTCCTCACTGATGCTAAGCGCCCAGCTC < 41bp 1 0.478962086814542 1 0.1280857026577 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRRT ENSG00000087087 CDS Human protein_coding chr7:100485418 chr7:100485399 nonsynonymous SNV 0.982 4 2 hm5C_associated_SNPs_44851 0 0 1 0 0 Nucleus 1 0.500231647212027 1 0.999536705575946 hm5C_site_43695 DeepMRMD:1;iRNA_m5C:0.999536705575946 43696 chr6 7566653 7566653 1 + A C UCEC 7566648 + 7566628 7566668 41 GAAGTTAAAGAAAAAGAGCTCAATAAGCTGAAACAAGAAAG GAAGTTAAAGAAAAAGAGCTCAATACGCTGAAACAAGAAAG < 41bp 1 0.128272404204487 1 0.388165682554245 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7566648 chr6:7566653 nonsynonymous SNV 1.000 3 26 hm5C_associated_SNPs_44852 0 0 1 0 2 Nucleus 1 0.500231646000381 1 0.999536707999238 hm5C_site_43696 DeepMRMD:1;iRNA_m5C:0.999536707999238 43697 chr3 148562351 148562351 1 + T C UCEC 148562331 + 148562311 148562351 41 ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAT ACAAGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGAC < 41bp 1 0.261792849836194 1 0.0842737555503845 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562331 chr3:148562351 synonymous SNV . 0 41 hm5C_associated_SNPs_44853 0 0 0 0 2 exosome 1 0.500231643754062 1 0.999536712491877 hm5C_site_43697 DeepMRMD:1;iRNA_m5C:0.999536712491877 43698 chr3 148562351 148562351 1 + T C UCEC 148562334 + 148562314 148562354 41 AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGC AGTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGACGGC < 41bp 1 0.131600478452153 1 0.0866718888282776 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562334 chr3:148562351 synonymous SNV . 0 38 hm5C_associated_SNPs_44854 0 0 0 0 2 exosome 1 0.500231648294468 1 0.999536703411065 hm5C_site_43698 DeepMRMD:1;iRNA_m5C:0.999536703411065 43699 chr3 148562351 148562351 1 + T C UCEC 148562335 + 148562315 148562355 41 GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGATGGCT GTTAGACTTTTATGTCCTGCCTGTGCTCAATATTGACGGCT < 41bp 1 0.412901595591077 1 0.364202916622162 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562335 chr3:148562351 synonymous SNV . 0 37 hm5C_associated_SNPs_44855 0 0 0 0 2 exosome 1 0.50025955581222 1 0.999480888375559 hm5C_site_43699 DeepMRMD:1;iRNA_m5C:0.999480888375559 43700 chr3 148562351 148562351 1 + T C UCEC 148562354 + 148562334 148562374 41 CCTGTGCTCAATATTGATGGCTACATCTACACCTGGACCAA CCTGTGCTCAATATTGACGGCTACATCTACACCTGGACCAA < 41bp 1 0.61588283846461 1 0.501412510871887 experiment 0.768234323070779 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562354 chr3:148562351 synonymous SNV . 0 18 hm5C_associated_SNPs_44858 0 0 0 0 2 exosome 1 0.500231643921092 0.997174978256226 0.999536712157815 hm5C_site_43700 DeepMRMD:0.997174978256226;iRNA_m5C:0.999536712157815 43701 chr3 148562351 148562351 1 + T C UCEC 148562357 + 148562337 148562377 41 GTGCTCAATATTGATGGCTACATCTACACCTGGACCAAGGT GTGCTCAATATTGACGGCTACATCTACACCTGGACCAAGGT < 41bp 1 0.110915547089996 1 0.0806642174720764 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562357 chr3:148562351 synonymous SNV . 0 15 hm5C_associated_SNPs_44859 0 0 0 0 2 exosome 1 0.500230745441378 1 0.999538509117244 hm5C_site_43701 DeepMRMD:1;iRNA_m5C:0.999538509117244 43702 chr3 148562351 148562351 1 + T C UCEC 148562360 + 148562340 148562380 41 CTCAATATTGATGGCTACATCTACACCTGGACCAAGGTATA CTCAATATTGACGGCTACATCTACACCTGGACCAAGGTATA < 41bp 1 0.694132630198888 1 0.73963063955307 experiment 0.611734739602223 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562360 chr3:148562351 synonymous SNV . 0 12 hm5C_associated_SNPs_44860 0 0 0 0 2 exosome 1 0.500231643921092 0.52073872089386 0.999536712157815 hm5C_site_43702 DeepMRMD:0.52073872089386;iRNA_m5C:0.999536712157815 43703 chr3 148562351 148562351 1 + T C UCEC 148562363 + 148562343 148562383 41 AATATTGATGGCTACATCTACACCTGGACCAAGGTATATGC AATATTGACGGCTACATCTACACCTGGACCAAGGTATATGC < 41bp 1 0.510475146101291 1 0.157802432775497 experiment 0.979049707797418 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562363 chr3:148562351 synonymous SNV . 0 9 hm5C_associated_SNPs_44861 0 0 0 0 2 exosome 1 0.500231640888551 1 0.999536718222897 hm5C_site_43703 DeepMRMD:1;iRNA_m5C:0.999536718222897 43704 chr3 148562351 148562351 1 + T C UCEC 148562365 + 148562345 148562385 41 TATTGATGGCTACATCTACACCTGGACCAAGGTATATGCAC TATTGACGGCTACATCTACACCTGGACCAAGGTATATGCAC < 41bp 1 0.333629022013014 1 0.109319686889648 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CPB1 ENSG00000153002 CDS Human protein_coding chr3:148562365 chr3:148562351 synonymous SNV . 0 7 hm5C_associated_SNPs_44862 0 0 0 0 2 exosome 1 0.50023164299837 1 0.99953671400326 hm5C_site_43704 DeepMRMD:1;iRNA_m5C:0.99953671400326 43705 chr10 129137320 129137320 1 + T A UCEC 129137333 + 129137313 129137353 41 AAAAAATTTCTGGATCAAGCCAACTTTGAGCTACAGGTAAG AAAAAATATCTGGATCAAGCCAACTTTGAGCTACAGGTAAG < 41bp 1 0.129554147794132 1 0.143285661935806 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129137333 chr10:129137320 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_44863 0 0 0 0 1 Nucleus 1 0.500231646880058 1 0.999536706239885 hm5C_site_43705 DeepMRMD:1;iRNA_m5C:0.999536706239885 43706 chr10 129137320 129137320 1 + T A UCEC 129137336 + 129137316 129137356 41 AAATTTCTGGATCAAGCCAACTTTGAGCTACAGGTAAGAGA AAATATCTGGATCAAGCCAACTTTGAGCTACAGGTAAGAGA < 41bp 1 0.0247756325200804 1 0.0501953959465027 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129137336 chr10:129137320 nonsynonymous SNV 1.000 4 5 hm5C_associated_SNPs_44864 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43706 DeepMRMD:1;iRNA_m5C:0.999536712157815 43707 chr1 43917106 43917106 1 + G A UCEC 43917100 - 43917080 43917120 41 GGCTACAAAGGCTTCGTGGGCTGTGAGTATCAGCCTCGAGG GGCTACAAAGGCTTTGTGGGCTGTGAGTATCAGCCTCGAGG < 41bp 1 0.284353038940081 1 0.100584179162979 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient HYI ENSG00000178922 CDS Human protein_coding chr1:43917100 chr1:43917106 synonymous SNV . 0 15 hm5C_associated_SNPs_44865 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43707 DeepMRMD:1;iRNA_m5C:0.999536712157815 43708 chr1 114440545 114440545 1 + C A UCEC 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGTGGTGCAGACTTTCCGATACCTGGTT < 41bp 1 0.439734001011208 1 0.347812861204147 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440545 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_44866 0 0 0 0 2 chromatin 1 0.500231558558033 1 0.999536882883934 hm5C_site_43708 DeepMRMD:1;iRNA_m5C:0.999536882883934 43709 chr11 4142939 4142939 1 + C A UCEC 4142924 + 4142904 4142944 41 AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTC AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATATTTTC < 41bp 1 0.557447879520019 1 0.464372158050537 experiment 0.885104240959962 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142924 chr11:4142939 nonsynonymous SNV 0.995 2 36 hm5C_associated_SNPs_44867 0 0 1 0 1 Nucleus 1 0.500231643918628 1 0.999536712162744 hm5C_site_43709 DeepMRMD:1;iRNA_m5C:0.999536712162744 43710 chr15 78841250 78841250 1 + G T UCEC 78841245 + 78841225 78841265 41 AAGAAGAAGCCAAAGCTGAGCGTGAGAAGAAAGAAAAAGAA AAGAAGAAGCCAAAGCTGAGCGTGATAAGAAAGAAAAAGAA < 41bp 1 0.648914961529638 1 0.478146433830261 experiment 0.702170076940723 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78841245 chr15:78841250 nonsynonymous SNV 0.998 1 26 hm5C_associated_SNPs_44868 0 0 1 0 0 Ribosome 1 0.500232338515131 1 0.999535322969738 hm5C_site_43710 DeepMRMD:1;iRNA_m5C:0.999535322969738 43711 chr7 116339968 116339968 1 + G T UCEC 116339981 + 116339961 116340001 41 CACACAAGAATAATCAGGTTCTGTTCCATAAACTCTGGATT CACACAATAATAATCAGGTTCTGTTCCATAAACTCTGGATT < 41bp 1 0.129426854427943 1 0.0553376972675323 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MET ENSG00000105976 CDS Human protein_coding chr7:116339981 chr7:116339968 nonsynonymous SNV 0.776 4 8 hm5C_associated_SNPs_44869 0 0 1 0 0 Cytosol 1 0.500231643921091 1 0.999536712157818 hm5C_site_43711 DeepMRMD:1;iRNA_m5C:0.999536712157818 43712 chr1 55075524 55075524 1 + A G UCEC 55075531 + 55075511 55075551 41 CTCCAGCGTCAGGATGTTGCCACTTGGAGTATGAACAATGG CTCCAGCGTCAGGGTGTTGCCACTTGGAGTATGAACAATGG < 41bp 1 0.510688948231185 1 0.259092211723328 experiment 0.978622103537629 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control FAM151A ENSG00000162391 CDS Human protein_coding chr1:55075531 chr1:55075524 nonsynonymous SNV 0.013 0 14 hm5C_associated_SNPs_44870 0 0 0 1 0 exosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_43712 DeepMRMD:1;iRNA_m5C:0.999536712157815 43713 chr1 10435347 10435347 1 + G A UCEC 10435355 + 10435335 10435375 41 GCACAAAGCACCGTGGGGTCCTTTTGCAGGCCCTCAATGAC GCACAAAGCACCATGGGGTCCTTTTGCAGGCCCTCAATGAC < 41bp 1 0.0331970968829117 1 0.0328662395477295 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10435355 chr1:10435347 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_44871 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43713 DeepMRMD:1;iRNA_m5C:0.999536712157815 43714 chr12 6646132 6646132 1 + G A UCEC 6646142 + 6646122 6646162 41 CGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCA CGCTGAGTACATCGTGGAGTCCACTGGCGTCTTCACCACCA < 41bp 1 0.430653111816148 1 0.098168671131134 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646142 chr12:6646132 nonsynonymous SNV 0.290 1 11 hm5C_associated_SNPs_44872 0 0 1 0 2 Ribosome 1 0.500190789841202 1 0.999618420317596 hm5C_site_43714 DeepMRMD:1;iRNA_m5C:0.999618420317596 43715 chr5 52096403 52096403 1 + A G UCEC 52096386 + 52096366 52096406 41 GGTACAGACAGAGTCCTCCACGGGCAGCGTGGGCAGCAACC GGTACAGACAGAGTCCTCCACGGGCAGCGTGGGCAGCGACC < 41bp 1 0.693753224393493 1 0.342622250318527 experiment 0.612493551213014 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PELO ENSG00000152684 CDS Human protein_coding chr5:52096386 chr5:52096403 nonsynonymous SNV 0.994 0 38 hm5C_associated_SNPs_44873 0 0 0 0 0 Ribosome 1 0.500231997529031 1 0.999536004941937 hm5C_site_43715 DeepMRMD:1;iRNA_m5C:0.999536004941937 Initial alcohol sensitivity 43716 chrX 70516427 70516427 1 + T C UCEC 70516419 + 70516399 70516439 41 TTGTTCTTTCTTCCAGATTTCCTCGTCCTGTGACTGTGGAG TTGTTCTTTCTTCCAGATTTCCTCGTCCCGTGACTGTGGAG < 41bp 1 0.106401877503755 1 0.107641935348511 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516419 chrX:70516427 synonymous SNV . 0 29 hm5C_associated_SNPs_44874 0 0 1 0 2 Nucleus 1 0.500231643918854 1 0.999536712162292 hm5C_site_43716 DeepMRMD:1;iRNA_m5C:0.999536712162292 43717 chrX 70516427 70516427 1 + T C UCEC 70516440 + 70516420 70516460 41 CTCGTCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGAT CTCGTCCCGTGACTGTGGAGCCCATGGACCAGTTAGATGAT < 41bp 1 0.0919851570572079 1 0.0385313928127289 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70516440 chrX:70516427 synonymous SNV . 0 8 hm5C_associated_SNPs_44875 0 0 1 0 2 Nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_43717 DeepMRMD:1;iRNA_m5C:0.999536712157812 43718 chr14 21967277 21967277 1 + C T UCEC 21967278 - 21967258 21967298 41 TAGTTTTTATTTCCTAGGTTCGTTCCACCAGTCATAAACCA TAGTTTTTATTTCCTAGGTTCATTCCACCAGTCATAAACCA < 41bp 1 0.0161813465746111 1 0.0728622376918793 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control METTL3 ENSG00000165819 CDS Human protein_coding chr14:21967278 chr14:21967277 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_44876 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43718 DeepMRMD:1;iRNA_m5C:0.999536712157815 43719 chr7 130021599 130021599 1 + C T UCEC 130021586 + 130021566 130021606 41 CCACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGT CCACGGCATCAGCTATGAGACCATGATCGAGGATGTGCAGT < 41bp 1 0.149281217493544 1 0.0365941524505615 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021586 chr7:130021599 synonymous SNV . 0 34 hm5C_associated_SNPs_44877 0 0 0 0 1 Endoplasmic reticulum 1 0.500206532365116 1 0.999586935269768 hm5C_site_43719 DeepMRMD:1;iRNA_m5C:0.999586935269768 43720 chr7 130021599 130021599 1 + C T UCEC 130021587 + 130021567 130021607 41 CACGGCATCAGCTATGAGACCATGATCGAGGACGTGCAGTC CACGGCATCAGCTATGAGACCATGATCGAGGATGTGCAGTC < 41bp 1 0.685225204037743 1 0.114584743976593 experiment 0.629549591924515 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021587 chr7:130021599 synonymous SNV . 0 33 hm5C_associated_SNPs_44878 0 0 0 0 1 Endoplasmic reticulum 1 0.500231663495578 1 0.999536673008844 hm5C_site_43720 DeepMRMD:1;iRNA_m5C:0.999536673008844 43721 chr10 91532536 91532536 1 + G A UCEC 91532517 + 91532497 91532537 41 CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAAACGG CAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAAACAG < 41bp 1 0.30050524179714 1 0.404503762722015 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control KIF20B ENSG00000138182 CDS Human protein_coding chr10:91532517 chr10:91532536 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_44879 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43721 DeepMRMD:1;iRNA_m5C:0.999536712157815 43722 chr19 49464798 49464798 1 + C A UCEC 49464797 + 49464777 49464817 41 CCCTGTCTCCAGGACGGCCTCCTCTCCTACTTTGGGACGCC CCCTGTCTCCAGGACGGCCTCATCTCCTACTTTGGGACGCC < 41bp 1 0.299391732363754 1 0.255930602550507 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BAX ENSG00000087088 CDS Human protein_coding chr19:49464797 chr19:49464798 nonsynonymous SNV 0.922 1 22 hm5C_associated_SNPs_44881 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_43722 DeepMRMD:1;iRNA_m5C:0.999536712157815 43723 chr19 6362538 6362538 1 + T A UCEC 6362549 + 6362529 6362569 41 ATCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTC ATCCACATGAACATCAACAGCCCTGGTGAGCAGGGTCTTTC < 41bp 1 0.200587983821839 1 0.0302045345306396 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656;ENSG00000125656 exonic;splicing Human other chr19:6362549 chr19:6362538 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_44882 0 0 1 0 2 Cytosol 1 0.500231688582859 1 0.999536622834282 hm5C_site_43723 DeepMRMD:1;iRNA_m5C:0.999536622834282 43724 chr19 6362538 6362538 1 + T A UCEC 6362550 + 6362530 6362570 41 TCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTCC TCCACATGAACATCAACAGCCCTGGTGAGCAGGGTCTTTCC < 41bp 1 0.204076577969798 1 0.0814743340015411 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656;ENSG00000125656 exonic;splicing Human other chr19:6362550 chr19:6362538 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_44883 0 0 1 0 2 Cytosol 1 0.500231643933692 1 0.999536712132617 hm5C_site_43724 DeepMRMD:1;iRNA_m5C:0.999536712132617 43725 chr19 14561842 14561842 1 + C T UCEC 14561839 + 14561819 14561859 41 GAAGAGCTCGCTGCGGCCTCCTCCGCTGCCTTCAGCACCCG GAAGAGCTCGCTGCGGCCTCCTCTGCTGCCTTCAGCACCCG < 41bp 1 0.431453617025987 1 0.171069473028183 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561839 chr19:14561842 synonymous SNV . 0 24 hm5C_associated_SNPs_44884 0 0 1 0 1 Ribosome 1 0.500231643464708 1 0.999536713070584 hm5C_site_43725 DeepMRMD:1;iRNA_m5C:0.999536713070584 43726 chr11 63997004 63997004 1 + G T UCEC 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTGAGTGGGGGACCCGATGCCCACGAGTCTACAG < 41bp 1 0.268399629986266 1 0.446901798248291 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63997004 nonsynonymous SNV 0.978 2 25 hm5C_associated_SNPs_44885 0 0 0 0 2 Ribosome 1 0.500231642374746 1 0.999536715250508 hm5C_site_43726 DeepMRMD:1;iRNA_m5C:0.999536715250508 43727 chr10 17278332 17278332 1 + C G UCEC 17278316 + 17278296 17278336 41 CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTCAAAA CTAATCTGGATTCACTCCCTCTGGTTGATACCCACTGAAAA < 41bp 1 0.290338024438767 1 0.67701667547226 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17278316 chr10:17278332 stopgain 0.998 0 37 hm5C_associated_SNPs_44886 0 0 1 0 2 Ribosome 1 0.500231643916683 0.64596664905548 0.999536712166634 hm5C_site_43727 DeepMRMD:0.64596664905548;iRNA_m5C:0.999536712166634 43728 chr17 78346485 78346485 1 + C T UCEC 78346488 + 78346468 78346508 41 GTGGCCCGGATCCGCCTCTGCCTCGACAGAGCTGCAGATTT GTGGCCCGGATCCGCCTTTGCCTCGACAGAGCTGCAGATTT < 41bp 1 0.0554633722679774 1 0.182100385427475 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78346488 chr17:78346485 synonymous SNV . 0 18 hm5C_associated_SNPs_44887 0 0 1 0 0 Nucleus 1 0.500231643914075 1 0.99953671217185 hm5C_site_43728 DeepMRMD:1;iRNA_m5C:0.99953671217185 43729 chr17 78346485 78346485 1 + C T UCEC 78346494 + 78346474 78346514 41 CGGATCCGCCTCTGCCTCGACAGAGCTGCAGATTTCCTCTC CGGATCCGCCTTTGCCTCGACAGAGCTGCAGATTTCCTCTC < 41bp 1 0.171070334715346 1 0.659572660923004 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78346494 chr17:78346485 synonymous SNV . 0 12 hm5C_associated_SNPs_44888 0 0 1 0 0 Nucleus 1 0.500231625270293 0.680854678153992 0.999536749459414 hm5C_site_43729 DeepMRMD:0.680854678153992;iRNA_m5C:0.999536749459414 43730 chrX 2641355 2641355 1 + G A UCEC 2641365 + 2641345 2641385 41 TGTCTTGCAGGAAAAGGAGGCAGTGATGGTGGAGGCAGCCA TGTCTTGCAGAAAAAGGAGGCAGTGATGGTGGAGGCAGCCA < 41bp 1 0.298238341903801 1 0.504561424255371 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD99 ENSG00000002586 CDS Human protein_coding chrX:2641365 chrX:2641355 nonsynonymous SNV 0.034 1 11 hm5C_associated_SNPs_44889 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921101 0.990877151489258 0.999536712157797 hm5C_site_43730 DeepMRMD:0.990877151489258;iRNA_m5C:0.999536712157797 43731 chr7 91714879 91714879 1 + G C UCEC 91714864 + 91714844 91714884 41 GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGG GGTGCTTTCTCTCACTGAGTCTCCCTATAGTGATGCAGAGG < 41bp 1 0.22162206269909 1 0.337579429149628 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714864 chr7:91714879 nonsynonymous SNV 0.903 0 36 hm5C_associated_SNPs_44890 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_43731 DeepMRMD:1;iRNA_m5C:0.999536712157815 43732 chr7 91714879 91714879 1 + G C UCEC 91714867 + 91714847 91714887 41 GCTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACC GCTTTCTCTCACTGAGTCTCCCTATAGTGATGCAGAGGACC < 41bp 1 0.0191573367877879 1 0.0749336779117584 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714867 chr7:91714879 nonsynonymous SNV 0.903 0 33 hm5C_associated_SNPs_44891 0 0 1 0 1 Nucleus 1 0.500231655490726 1 0.999536689018548 hm5C_site_43732 DeepMRMD:1;iRNA_m5C:0.999536689018548 43733 chr7 91714879 91714879 1 + G C UCEC 91714868 + 91714848 91714888 41 CTTTCTCTCACTGAGTCTCCCTATAGTGATGGAGAGGACCA CTTTCTCTCACTGAGTCTCCCTATAGTGATGCAGAGGACCA < 41bp 1 0.231247406185427 1 0.37359482049942 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714868 chr7:91714879 nonsynonymous SNV 0.903 0 32 hm5C_associated_SNPs_44892 0 0 1 0 1 Nucleus 1 0.500231644390652 1 0.999536711218695 hm5C_site_43733 DeepMRMD:1;iRNA_m5C:0.999536711218695 43734 chr7 91714879 91714879 1 + G C UCEC 91714891 + 91714871 91714911 41 TAGTGATGGAGAGGACCATTCTATTCAGCAGGTTTCAGAAC TAGTGATGCAGAGGACCATTCTATTCAGCAGGTTTCAGAAC < 41bp 1 0.161973199808012 1 0.169393837451935 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control AKAP9 ENSG00000127914 CDS Human protein_coding chr7:91714891 chr7:91714879 nonsynonymous SNV 0.903 0 9 hm5C_associated_SNPs_44893 0 0 1 0 1 Nucleus 1 0.50023223656508 1 0.999535526869841 hm5C_site_43734 DeepMRMD:1;iRNA_m5C:0.999535526869841 43735 chr3 123348376 123348376 1 + C T UCEC 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATCGTCGGAGATCTTATCGAATGCCTCGTCGTCGAAGT < 41bp 1 0.649786175487478 1 0.415423452854156 experiment 0.700427649025045 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348376 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_44895 0 0 0 0 1 Cytosol 1 0.500231643911106 1 0.999536712177788 hm5C_site_43735 DeepMRMD:1;iRNA_m5C:0.999536712177788 43736 chr6 43188277 43188277 1 + C T UCEC 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCTGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.54816267549335 1 0.350996315479279 experiment 0.903674649013301 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188277 synonymous SNV . 0 3 hm5C_associated_SNPs_44896 0 0 0 0 2 chromatin 1 0.500231643994149 1 0.999536712011703 hm5C_site_43736 DeepMRMD:1;iRNA_m5C:0.999536712011703 43737 chr10 75676163 75676163 1 + C A UCEC 75676179 + 75676159 75676199 41 GGACCCCTCGTCTGTTCCCTCCAAGGCCGCATGACTTTGAC GGACACCTCGTCTGTTCCCTCCAAGGCCGCATGACTTTGAC < 41bp 1 0.366514907261789 1 0.692973673343658 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLAU ENSG00000122861 CDS Human protein_coding chr10:75676179 chr10:75676163 nonsynonymous SNV 0.022 4 5 hm5C_associated_SNPs_44897 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921634 0.614052653312684 0.999536712156732 hm5C_site_43737 DeepMRMD:0.614052653312684;iRNA_m5C:0.999536712156732 43738 chr17 33328361 33328361 1 + G A UCEC 33328374 + 33328354 33328394 41 TTCCCTCGCTGCACCCGAATCCGAGATGATAAGGACTGGAA TTCCCTCACTGCACCCGAATCCGAGATGATAAGGACTGGAA < 41bp 1 0.416193240835341 1 0.760663151741028 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LIG3 ENSG00000005156 CDS Human protein_coding chr17:33328374 chr17:33328361 nonsynonymous SNV 0.997 4 8 hm5C_associated_SNPs_44898 0 0 1 0 2 Cytosol 1 0.500231643921093 0.478673696517944 0.999536712157814 hm5C_site_43738 DeepMRMD:0.478673696517944;iRNA_m5C:0.999536712157814 43739 chr16 845834 845834 1 + C T UCEC 845820 + 845800 845840 41 TGCTCCTGGACATTCTTGCACCCAAGCTCCGCCCCGTGAGT TGCTCCTGGACATTCTTGCACCCAAGCTCCGCCCTGTGAGT < 41bp 1 0.253498322934129 1 0.0873498320579529 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845820 chr16:845834 synonymous SNV . 0 35 hm5C_associated_SNPs_44899 0 0 1 0 1 Nucleus 1 0.500231643921181 1 0.999536712157638 hm5C_site_43739 DeepMRMD:1;iRNA_m5C:0.999536712157638 43740 chr19 49593570 49593570 1 + C A UCEC 49593563 + 49593543 49593583 41 CCCAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAA CCCAGGACCCTCGAGATGCCCCTCCTCAAACTCGTGCTGAA < 41bp 1 0.05887474043732 1 0.0760475397109985 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593563 chr19:49593570 nonsynonymous SNV 0.997 4 28 hm5C_associated_SNPs_44900 0 0 1 0 2 Nucleus 1 0.500231643921339 1 0.999536712157323 hm5C_site_43740 DeepMRMD:1;iRNA_m5C:0.999536712157323 43741 chr19 49593570 49593570 1 + C A UCEC 49593564 + 49593544 49593584 41 CCAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAAA CCAGGACCCTCGAGATGCCCCTCCTCAAACTCGTGCTGAAA < 41bp 1 0.213338705253746 1 0.150329977273941 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593564 chr19:49593570 nonsynonymous SNV 0.997 4 27 hm5C_associated_SNPs_44901 0 0 1 0 2 Nucleus 1 0.500231516257398 1 0.999536967485204 hm5C_site_43741 DeepMRMD:1;iRNA_m5C:0.999536967485204 43742 chr19 49593570 49593570 1 + C A UCEC 49593586 + 49593566 49593606 41 CCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG CCTCAAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAG < 41bp 1 0.51353713161137 1 0.747860074043274 experiment 0.972925736777261 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593586 chr19:49593570 nonsynonymous SNV 0.997 4 5 hm5C_associated_SNPs_44903 0 0 1 0 2 Nucleus 1 0.50023164392163 0.504279851913452 0.99953671215674 hm5C_site_43742 DeepMRMD:0.504279851913452;iRNA_m5C:0.99953671215674 43743 chr1 147091686 147091686 1 + G A UCEC 147091688 + 147091668 147091708 41 AAACTCTGAAATGGAAGGGCCGAATGTCCCCAACCCTGCAT AAACTCTGAAATGGAAGGACCGAATGTCCCCAACCCTGCAT < 41bp 1 0.263259547313592 1 0.186998069286346 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BCL9 ENSG00000116128 CDS Human protein_coding chr1:147091688 chr1:147091686 synonymous SNV . 0 19 hm5C_associated_SNPs_44904 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43743 DeepMRMD:1;iRNA_m5C:0.999536712157815 43744 chr16 30941507 30941507 1 + T G UCEC 30941505 + 30941485 30941525 41 GCCAGCTGCTGGAACGGGTGCCTGACACCTCCTCTTCCTCC GCCAGCTGCTGGAACGGGTGCCGGACACCTCCTCTTCCTCC < 41bp 1 0.471552652526265 1 0.410319030284882 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30941505 chr16:30941507 synonymous SNV . 0 23 hm5C_associated_SNPs_44905 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43744 DeepMRMD:1;iRNA_m5C:0.999536712157815 43745 chr12 105553810 105553810 1 + C T UCEC 105553821 + 105553801 105553841 41 GATCACACACGAAATTCTGCCGAAGGCACAGAATATTTCAA GATCACACATGAAATTCTGCCGAAGGCACAGAATATTTCAA < 41bp 1 0.4100378628403 1 0.553618907928467 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105553821 chr12:105553810 stopgain 1.000 1 10 hm5C_associated_SNPs_44906 0 0 1 0 1 unknown 1 0.500234090436741 0.892762184143066 0.999531819126518 hm5C_site_43745 DeepMRMD:0.892762184143066;iRNA_m5C:0.999531819126518 43746 chr6 168363204 168363204 1 + G A UCEC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGCGCCAGCGGCAGGAGGAGGAGCG < 41bp 1 0.171104938371182 1 0.470098286867142 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363204 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_44907 0 0 1 0 3 unknown 1 0.500231643921106 1 0.999536712157787 hm5C_site_43746 DeepMRMD:1;iRNA_m5C:0.999536712157787 43747 chr17 73738713 73738713 1 + C T UCEC 73738719 + 73738699 73738739 41 AGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAG AGCTGGTGGACGTATGGGTGCCCCTCTTTATCCGGCCTGAG < 41bp 1 0.118237007846684 1 0.0295092463493347 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738719 chr17:73738713 nonsynonymous SNV 0.920 4 15 hm5C_associated_SNPs_44908 1 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43747 DeepMRMD:1;iRNA_m5C:0.999536712157815 Epidermolysis bullosa junctionalis with pyloric atresia Epidermolysis bullosa junctionalis with pyloric atresia 43748 chr16 1817172 1817172 1 + C T UCEC 1817164 + 1817144 1817184 41 CTCCAGATGGCCAGTGGGATCTGAGCAACTATCACCTAATG CTCCAGATGGCCAGTGGGATCTGAGCAATTATCACCTAATG < 41bp 1 0.506620464535932 1 0.324399948120117 experiment 0.986759070928136 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1817164 chr16:1817172 synonymous SNV . 0 29 hm5C_associated_SNPs_44909 0 0 0 0 1 chromatin 1 0.500231643921072 1 0.999536712157856 hm5C_site_43748 DeepMRMD:1;iRNA_m5C:0.999536712157856 43749 chr6 117869570 117869570 1 + C A UCEC 117869589 + 117869569 117869609 41 CCTCAACCAGACGGCCATGACTGCCCTTTTGTGAACACAAT CATCAACCAGACGGCCATGACTGCCCTTTTGTGAACACAAT < 41bp 1 0.379168487614228 1 0.166501581668854 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117869589 chr6:117869570 nonsynonymous SNV 0.897 1 2 hm5C_associated_SNPs_44910 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_43749 DeepMRMD:1;iRNA_m5C:0.999536712157815 43750 chr11 45924573 45924573 1 + G A UCEC 45924592 + 45924572 45924612 41 CGTCTCCTCGCCCTATGAGTCGGCCATCGGAGAGGAATATG CATCTCCTCGCCCTATGAGTCGGCCATCGGAGAGGAATATG < 41bp 1 0.291714370942118 1 0.424037009477615 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45924592 chr11:45924573 nonsynonymous SNV 0.971 1 2 hm5C_associated_SNPs_44911 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921078 1 0.999536712157844 hm5C_site_43750 DeepMRMD:1;iRNA_m5C:0.999536712157844 43751 chr17 27049885 27049885 1 + C T UCEC 27049866 + 27049846 27049886 41 CAAGCACCAGATTAAACAGGCTGTGAAGAAGCTGTATGACA CAAGCACCAGATTAAACAGGCTGTGAAGAAGCTGTATGATA < 41bp 1 0.248931830552775 1 0.105336487293243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL23A ENSG00000198242 CDS Human protein_coding chr17:27049866 chr17:27049885 synonymous SNV . 0 40 hm5C_associated_SNPs_44912 0 0 1 0 1 Cytosol 1 0.500231643921091 1 0.999536712157817 hm5C_site_43751 DeepMRMD:1;iRNA_m5C:0.999536712157817 43752 chr17 27049885 27049885 1 + C T UCEC 27049896 + 27049876 27049916 41 GCTGTATGACATTGATGTGGCCAAGGTCAACACCCTGATTC GCTGTATGATATTGATGTGGCCAAGGTCAACACCCTGATTC < 41bp 1 0.453771408436168 1 0.415976285934448 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL23A ENSG00000198242 CDS Human protein_coding chr17:27049896 chr17:27049885 synonymous SNV . 0 10 hm5C_associated_SNPs_44913 0 0 1 0 1 Cytosol 1 0.500257135550558 1 0.999485728898884 hm5C_site_43752 DeepMRMD:1;iRNA_m5C:0.999485728898884 43753 chr3 10320677 10320677 1 + C T UCEC 10320688 + 10320668 10320708 41 GCTGCCTTGCGTGAGAACACCAGTCGCCTCTACAGTCTTTA GCTGCCTTGTGTGAGAACACCAGTCGCCTCTACAGTCTTTA < 41bp 1 0.18172604027565 1 0.102928280830383 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320688 chr3:10320677 nonsynonymous SNV 0.710 3 10 hm5C_associated_SNPs_44915 0 0 1 0 2 Cytosol 1 0.500231512410755 1 0.99953697517849 hm5C_site_43753 DeepMRMD:1;iRNA_m5C:0.99953697517849 43754 chr3 138341056 138341056 1 + C A UCEC 138341068 + 138341048 138341088 41 TGGATGTTCAAATTAGTGGGCAAAGAAACATTCTATGTTGG TGGATGTTAAAATTAGTGGGCAAAGAAACATTCTATGTTGG < 41bp 1 0.132526369967977 1 0.240726262331009 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138341068 chr3:138341056 nonsynonymous SNV 0.990 4 9 hm5C_associated_SNPs_44916 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43754 DeepMRMD:1;iRNA_m5C:0.999536712157815 43755 chr20 35176483 35176483 1 + C T UCEC 35176493 + 35176473 35176513 41 AGCGAGGCCCCGGGGCCCATCAACTTCACCATGTTCCTCAC AGCGAGGCCCTGGGGCCCATCAACTTCACCATGTTCCTCAC < 41bp 1 0.569810318323718 1 0.821735680103302 experiment 0.860379363352563 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MYL9 ENSG00000101335 CDS Human protein_coding chr20:35176493 chr20:35176483 nonsynonymous SNV 0.988 2 11 hm5C_associated_SNPs_44917 0 0 0 0 1 Cytosol 1 0.500231643919924 0.356528639793396 0.999536712160152 hm5C_site_43755 DeepMRMD:0.356528639793396;iRNA_m5C:0.999536712160152 43756 chr11 107966289 107966289 1 + T G UCEC 107966308 + 107966288 107966328 41 ATTTGGAGGTAACCACGTTTCAGCTCGCTGTATTGTTTGCA AGTTGGAGGTAACCACGTTTCAGCTCGCTGTATTGTTTGCA < 41bp 1 0.497609484628095 1 0.501153707504272 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CUL5 ENSG00000166266 CDS Human protein_coding chr11:107966308 chr11:107966289 nonsynonymous SNV 0.998 1 2 hm5C_associated_SNPs_44918 0 0 1 0 1 Ribosome 1 0.500231645326419 0.997692584991456 0.999536709347162 hm5C_site_43756 DeepMRMD:0.997692584991456;iRNA_m5C:0.999536709347162 43757 chr1 145293188 145293188 1 + C G UCEC 145293174 + 145293154 145293194 41 ATCAGAGTCTGAGCTACTGGCAGTGCTTTCAGCTCTGAGTT ATCAGAGTCTGAGCTACTGGCAGTGCTTTCAGCTGTGAGTT < 41bp 1 0.12194227726268 1 0.109072744846344 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NBPF25P ENSG00000255168 CDS Human other chr1:145293174 chr1:145293188 nonsynonymous SNV . 0 35 hm5C_associated_SNPs_44919 0 0 0 0 2 unknown 1 0.500231602993584 1 0.999536794012832 hm5C_site_43757 DeepMRMD:1;iRNA_m5C:0.999536794012832 43758 chr20 39746905 39746905 1 + T C UCEC 39746895 + 39746875 39746915 41 GTAACCATCAGAGGGCACCACCAAAAACTTTTGAGAAGTCT GTAACCATCAGAGGGCACCACCAAAAACTTCTGAGAAGTCT < 41bp 1 0.217673650616405 1 0.168753415346146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39746895 chr20:39746905 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_44920 0 0 0 0 2 Nucleus 1 0.500231614651808 1 0.999536770696385 hm5C_site_43758 DeepMRMD:1;iRNA_m5C:0.999536770696385 43759 chr16 2514075 2514075 1 + G T UCEC 2514057 + 2514037 2514077 41 CAGCGGTGGCGGAACAGCCACCAAGACCATGTCCTGTGGGG CAGCGGTGGCGGAACAGCCACCAAGACCATGTCCTGTGTGG < 41bp 1 0.248123549025655 1 0.298507153987885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514057 chr16:2514075 nonsynonymous SNV 0.001 2 39 hm5C_associated_SNPs_44921 0 0 0 0 1 Ribosome 1 0.50023164477324 1 0.999536710453519 hm5C_site_43759 DeepMRMD:1;iRNA_m5C:0.999536710453519 43760 chr3 51737776 51737776 1 + T C UCEC 51737767 + 51737747 51737787 41 CACAATGAGTGACACGAGTTCTGTAAGCTTGGAAGTGAGCC CACAATGAGTGACACGAGTTCTGTAAGCTCGGAAGTGAGCC < 41bp 1 0.563998920008364 1 0.262880951166153 experiment 0.872002159983271 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TEX264 ENSG00000164081 CDS Human protein_coding chr3:51737767 chr3:51737776 nonsynonymous SNV 0.991 0 30 hm5C_associated_SNPs_44923 0 0 1 0 1 Ribosome 1 0.500231643918811 1 0.999536712162379 hm5C_site_43760 DeepMRMD:1;iRNA_m5C:0.999536712162379 43761 chr21 45560184 45560184 1 + C T UCEC 45560204 + 45560184 45560224 41 CGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG TGTGTCCTGAAGGAGTTCCACCAGGCCGGGAAGCCCATCGG < 41bp 1 0.651684747914252 1 0.329770624637604 experiment 0.696630504171496 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45560204 chr21:45560184 nonsynonymous SNV 0.028 4 1 hm5C_associated_SNPs_44925 0 0 1 0 2 Ribosome 1 0.500231649185745 1 0.999536701628509 hm5C_site_43761 DeepMRMD:1;iRNA_m5C:0.999536701628509 43762 chr8 22054841 22054841 1 + A G UCEC 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCCGGGGTCATCACCTCCCAGTACAACAACATGCGCG < 41bp 1 0.185306165884967 1 0.172325432300568 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054841 nonsynonymous SNV 0.992 0 9 hm5C_associated_SNPs_44927 0 0 1 0 2 Endoplasmic reticulum 1 0.500231646266808 1 0.999536707466384 hm5C_site_43762 DeepMRMD:1;iRNA_m5C:0.999536707466384 43763 chr20 60708474 60708474 1 + G T UCEC 60708483 + 60708463 60708503 41 TGGGACCACCCGTCGCAACCCCACTTCCCACAGGGCCGGGA TGGGACCACCCTTCGCAACCCCACTTCCCACAGGGCCGGGA < 41bp 1 0.240895800875747 1 0.0258095562458038 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LSM14B ENSG00000149657 CDS Human protein_coding chr20:60708483 chr20:60708474 nonsynonymous SNV 0.849 3 12 hm5C_associated_SNPs_44928 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43763 DeepMRMD:1;iRNA_m5C:0.999536712157815 43764 chr12 104327825 104327825 1 + A G UCEC 104327808 + 104327788 104327828 41 AGAGAAGAGTTGGTTAAAAACCTTGGTACCATAGCCAAATC AGAGAAGAGTTGGTTAAAAACCTTGGTACCATAGCCAGATC < 41bp 1 0.257695150154348 1 0.0770439803600311 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104327808 chr12:104327825 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_44929 0 0 1 0 0 Nucleus 1 0.500230553636077 1 0.999538892727845 hm5C_site_43764 DeepMRMD:1;iRNA_m5C:0.999538892727845 43765 chr1 212970477 212970477 1 + G T UCEC 212970488 + 212970468 212970508 41 TCCTGCCATGCTTGGGTGTTCATCCAGTTCAAGGACTTCCA TCCTGCCATTCTTGGGTGTTCATCCAGTTCAAGGACTTCCA < 41bp 1 0.250856236422657 1 0.0416581630706787 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TATDN3 ENSG00000203705 CDS Human protein_coding chr1:212970488 chr1:212970477 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_44930 0 0 1 0 2 Ribosome 1 0.500231643915356 1 0.999536712169289 hm5C_site_43765 DeepMRMD:1;iRNA_m5C:0.999536712169289 43766 chr17 18167935 18167935 1 + C T UCEC 18167953 + 18167933 18167973 41 TGCTCATCGGCAGCCTGGAGCAGGCCAGCCTGCCCTGCCAC TGTTCATCGGCAGCCTGGAGCAGGCCAGCCTGCCCTGCCAC < 41bp 1 0.684229971540983 1 0.924288392066956 experiment 0.631540056918034 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control MIEF2 ENSG00000177427 CDS Human protein_coding chr17:18167953 chr17:18167935 nonsynonymous SNV 0.278 4 3 hm5C_associated_SNPs_44931 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643913836 0.151423215866088 0.999536712172329 hm5C_site_43766 DeepMRMD:0.151423215866088;iRNA_m5C:0.999536712172329 43767 chr2 99985889 99985889 1 + A C UCEC 99985879 + 99985859 99985899 41 TGAATCAATGGAATTATGTGCTGCTGTAGAAGTTATGGAAC TGAATCAATGGAATTATGTGCTGCTGTAGACGTTATGGAAC < 41bp 1 0.438618936904223 1 0.25346428155899 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99985879 chr2:99985889 nonsynonymous SNV 0.385 0 31 hm5C_associated_SNPs_44932 0 0 1 0 0 Ribosome 1 0.500231643908487 1 0.999536712183026 hm5C_site_43767 DeepMRMD:1;iRNA_m5C:0.999536712183026 43768 chr2 99985889 99985889 1 + A C UCEC 99985882 + 99985862 99985902 41 ATCAATGGAATTATGTGCTGCTGTAGAAGTTATGGAACAAG ATCAATGGAATTATGTGCTGCTGTAGACGTTATGGAACAAG < 41bp 1 0.346541094571534 1 0.388825565576553 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99985882 chr2:99985889 nonsynonymous SNV 0.385 0 28 hm5C_associated_SNPs_44933 0 0 1 0 0 Ribosome 1 0.500231638060187 1 0.999536723879625 hm5C_site_43768 DeepMRMD:1;iRNA_m5C:0.999536723879625 43769 chr2 99985889 99985889 1 + A C UCEC 99985899 + 99985879 99985919 41 CTGCTGTAGAAGTTATGGAACAAGGAGTACCAGAAAAGGAA CTGCTGTAGACGTTATGGAACAAGGAGTACCAGAAAAGGAA < 41bp 1 0.651410339553413 1 0.429660052061081 experiment 0.697179320893174 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99985899 chr2:99985889 nonsynonymous SNV 0.385 0 11 hm5C_associated_SNPs_44934 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43769 DeepMRMD:1;iRNA_m5C:0.999536712157815 43770 chr2 99985889 99985889 1 + A C UCEC 99985908 + 99985888 99985928 41 AAGTTATGGAACAAGGAGTACCAGAAAAGGAAGAGACACCA ACGTTATGGAACAAGGAGTACCAGAAAAGGAAGAGACACCA < 41bp 1 0.600833801137554 1 0.224275439977646 experiment 0.798332397724893 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99985908 chr2:99985889 nonsynonymous SNV 0.385 0 2 hm5C_associated_SNPs_44935 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43770 DeepMRMD:1;iRNA_m5C:0.999536712157815 43771 chr2 74074753 74074753 1 + A G UCEC 74074746 + 74074726 74074766 41 AGTGCCTGACTTGGAGAAGCCCTCCTTAGATGTGTTCCCCA AGTGCCTGACTTGGAGAAGCCCTCCTTGGATGTGTTCCCCA < 41bp 1 0.129953975044437 1 0.0804388821125031 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74074746 chr2:74074753 synonymous SNV . 0 28 hm5C_associated_SNPs_44936 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43771 DeepMRMD:1;iRNA_m5C:0.999536712157815 43772 chr2 133402852 133402852 1 + G T UCEC 133402834 + 133402814 133402854 41 TTCTACCTCAGCTCGGTCATCAACCCGCTCCTGTACACGGT TTCTACCTCAGCTCGGTCATCAACCCGCTCCTGTACACTGT < 41bp 1 0.175676765643395 1 0.158609300851822 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR39 ENSG00000183840 CDS Human protein_coding chr2:133402834 chr2:133402852 synonymous SNV . 0 39 hm5C_associated_SNPs_44938 0 0 0 0 0 nucleus 1 0.500231643921158 1 0.999536712157685 hm5C_site_43772 DeepMRMD:1;iRNA_m5C:0.999536712157685 43773 chr1 161751785 161751785 1 + T C UCEC 161751776 + 161751756 161751796 41 GACATTTGGGACATCAACAACCAAATCTGTACAGGTAATTA GACATTTGGGACATCAACAACCAAATCTGCACAGGTAATTA < 41bp 1 0.190321213998021 1 0.140946269035339 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161751776 chr1:161751785 synonymous SNV . 0 30 hm5C_associated_SNPs_44939 0 0 1 0 2 Endoplasmic reticulum 1 0.500231647932676 1 0.999536704134647 hm5C_site_43773 DeepMRMD:1;iRNA_m5C:0.999536704134647 43774 chr22 43558925 43558925 1 + C T UCEC 43558927 + 43558907 43558947 41 CCTGGCCTGGCTGGCCTTCACGACCACACTCAACTACTGCG CCTGGCCTGGCTGGCCTTTACGACCACACTCAACTACTGCG < 41bp 1 0.587767817287089 1 0.085856705904007 experiment 0.824464365425821 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TSPO ENSG00000100300 CDS Human protein_coding chr22:43558927 chr22:43558925 nonsynonymous SNV . 0 19 hm5C_associated_SNPs_44940 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43774 DeepMRMD:1;iRNA_m5C:0.999536712157815 43775 chr14 60592509 60592509 1 + T C UCEC 60592489 + 60592469 60592509 41 TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAT TGATGAAAAGTGGAAGGAAGCAATTTTACAAGAAAAGCCAC < 41bp 1 0.313192264584483 1 0.257998615503311 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60592489 chr14:60592509 nonsynonymous SNV 0.997 2 41 hm5C_associated_SNPs_44942 0 0 1 2 1 Endoplasmic reticulum 1 0.500231644002793 1 0.999536711994415 hm5C_site_43775 DeepMRMD:1;iRNA_m5C:0.999536711994415 43776 chr16 1397797 1397797 1 + G A UCEC 1397801 + 1397781 1397821 41 AGGTGCTGCACGCCGCGGACCTGCTCCCCCTGGACGCCAAC AGGTGCTGCACGCCGCAGACCTGCTCCCCCTGGACGCCAAC < 41bp 1 0.34802414253949 1 0.133115977048874 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1397801 chr16:1397797 synonymous SNV . 0 17 hm5C_associated_SNPs_44943 0 0 0 0 2 chromatin 1 0.500231643920062 1 0.999536712159875 hm5C_site_43776 DeepMRMD:1;iRNA_m5C:0.999536712159875 43777 chr1 110171381 110171381 1 + C T UCEC 110171392 + 110171372 110171412 41 CATGCACCGCGTGCACTCCCCCAACGTGCGCTGGCTGGTGC CATGCACCGTGTGCACTCCCCCAACGTGCGCTGGCTGGTGC < 41bp 1 0.222990397793656 1 0.272607207298279 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110171392 chr1:110171381 synonymous SNV . 0 10 hm5C_associated_SNPs_44944 0 0 0 0 1 Cytosol 1 0.500238194358765 1 0.999523611282471 hm5C_site_43777 DeepMRMD:1;iRNA_m5C:0.999523611282471 43778 chr8 26223917 26223917 1 + T C UCEC 26223916 + 26223896 26223936 41 TGAATGTTGTTGGAATGGATCTGACAGGTAATTAAGTCAAA TGAATGTTGTTGGAATGGATCCGACAGGTAATTAAGTCAAA < 41bp 1 0.0775516702545646 1 0.159130722284317 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223916 chr8:26223917 synonymous SNV . 0 22 hm5C_associated_SNPs_44945 0 0 1 0 2 Cytosol 1 0.50023164392033 1 0.999536712159339 hm5C_site_43778 DeepMRMD:1;iRNA_m5C:0.999536712159339 43779 chr8 26223917 26223917 1 + T C UCEC 26223920 + 26223900 26223940 41 TGTTGTTGGAATGGATCTGACAGGTAATTAAGTCAAACCTC TGTTGTTGGAATGGATCCGACAGGTAATTAAGTCAAACCTC < 41bp 1 0.377537934772915 1 0.630474090576172 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PPP2R2A ENSG00000221914 CDS Human protein_coding chr8:26223920 chr8:26223917 synonymous SNV . 0 18 hm5C_associated_SNPs_44946 0 0 1 0 2 Cytosol 1 0.500231643921093 0.739051818847656 0.999536712157815 hm5C_site_43779 DeepMRMD:0.739051818847656;iRNA_m5C:0.999536712157815 43780 chr19 1434846 1434846 1 + G A UCEC 1434836 + 1434816 1434856 41 TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGG TCCGTGCCAGGGTCGGGGGGCCCCCCCGCCAGCGGCAGCGG < 41bp 1 0.326800809936068 1 0.126468300819397 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434836 chr19:1434846 nonsynonymous SNV 0.824 1 31 hm5C_associated_SNPs_44947 0 0 1 0 0 chromatin 1 0.500231595568936 1 0.999536808862128 hm5C_site_43780 DeepMRMD:1;iRNA_m5C:0.999536808862128 43781 chr19 1434846 1434846 1 + G A UCEC 1434837 + 1434817 1434857 41 CCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGC CCGTGCCAGGGTCGGGGGGCCCCCCCGCCAGCGGCAGCGGC < 41bp 1 0.382462366957243 1 0.10453999042511 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434837 chr19:1434846 nonsynonymous SNV 0.824 1 30 hm5C_associated_SNPs_44948 0 0 1 0 0 chromatin 1 0.500231643909187 1 0.999536712181627 hm5C_site_43781 DeepMRMD:1;iRNA_m5C:0.999536712181627 43782 chr19 1434846 1434846 1 + G A UCEC 1434838 + 1434818 1434858 41 CGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCT CGTGCCAGGGTCGGGGGGCCCCCCCGCCAGCGGCAGCGGCT < 41bp 1 0.488471866410687 1 0.25387167930603 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434838 chr19:1434846 nonsynonymous SNV 0.824 1 29 hm5C_associated_SNPs_44949 0 0 1 0 0 chromatin 1 0.500231643915186 1 0.999536712169628 hm5C_site_43782 DeepMRMD:1;iRNA_m5C:0.999536712169628 43783 chr19 41306553 41306553 1 + G T UCEC 41306542 + 41306522 41306562 41 TCAGTTACCAGGGTCTTCGTCAGAGCCCTTGGAGCCTGAGC TCAGTTACCAGGGTCTTCGTCAGAGCCCTTGTAGCCTGAGC < 41bp 1 0.635020100016916 1 0.937201619148254 experiment 0.729959799966168 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41306542 chr19:41306553 stopgain 0.967 0 32 hm5C_associated_SNPs_44952 0 0 1 0 0 chromatin 1 0.500232064516512 0.125596761703492 0.999535870966977 hm5C_site_43783 DeepMRMD:0.125596761703492;iRNA_m5C:0.999535870966977 43784 chr11 68204381 68204381 1 + G A UCEC 68204395 + 68204375 68204415 41 AGTTCCGGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG AGTTCCAGTGTGCGAGCGGCCAGTGTGTCCTCATCAAACAG < 41bp 1 0.41707336995998 1 0.438703924417496 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204395 chr11:68204381 nonsynonymous SNV 0.970 2 7 hm5C_associated_SNPs_44953 0 0 1 0 2 Endoplasmic reticulum 1 0.500231644504391 1 0.999536710991219 hm5C_site_43784 DeepMRMD:1;iRNA_m5C:0.999536710991219 43785 chr8 27288495 27288495 1 + G A UCEC 27288507 + 27288487 27288527 41 CCGGCTTCGCCAACATCGACCAGGAGACCTACCGCTGTGAA CCGGCTTCACCAACATCGACCAGGAGACCTACCGCTGTGAA < 41bp 1 0.665369767891438 1 0.964138388633728 experiment 0.669260464217125 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTK2B ENSG00000120899 CDS Human protein_coding chr8:27288507 chr8:27288495 nonsynonymous SNV 0.993 1 9 hm5C_associated_SNPs_44954 0 0 1 0 1 chromatin 1 0.500202737942771 0.0717232227325439 0.999594524114458 hm5C_site_43785 DeepMRMD:0.0717232227325439;iRNA_m5C:0.999594524114458 43786 chr16 12618645 12618645 1 + G C UCEC 12618659 + 12618639 12618679 41 CCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC CCCCGACTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCC < 41bp 1 0.146959136230064 1 0.414547383785248 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618659 chr16:12618645 nonsynonymous SNV 0.799 1 7 hm5C_associated_SNPs_44955 0 0 0 0 2 Nucleus 1 0.500231643914239 1 0.999536712171522 hm5C_site_43786 DeepMRMD:1;iRNA_m5C:0.999536712171522 43787 chr6 133783601 133783601 1 + G T UCEC 133783602 + 133783582 133783622 41 CAGACAGGACAGCCCTACAGCTTGCCCACTTACGGTATTTC CAGACAGGACAGCCCTACATCTTGCCCACTTACGGTATTTC < 41bp 1 0.107485194197356 1 0.049150139093399 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783602 chr6:133783601 nonsynonymous SNV 1.000 5 20 hm5C_associated_SNPs_44956 0 0 0 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_43787 DeepMRMD:1;iRNA_m5C:0.999536712157815 43788 chr1 10328300 10328300 1 + G T UCEC 10328306 + 10328286 10328326 41 AAACACGATAATGAGACCAACCTTTCCACTGAGAAGGTAGG AAACACGATAATGATACCAACCTTTCCACTGAGAAGGTAGG < 41bp 1 0.00268531252647476 1 0.0418626070022583 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KIF1B ENSG00000054523 CDS Human protein_coding chr1:10328306 chr1:10328300 nonsynonymous SNV 0.925 2 15 hm5C_associated_SNPs_44957 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43788 DeepMRMD:1;iRNA_m5C:0.999536712157815 43789 chr1 86048107 86048107 1 + A T UCEC 86048095 + 86048075 86048115 41 GTCTTCCCTCTTATATGTCTCTAGTTTTTGGAATGGAGCCT GTCTTCCCTCTTATATGTCTCTAGTTTTTGGATTGGAGCCT < 41bp 1 0.257443229183908 1 0.319637537002563 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048095 chr1:86048107 nonsynonymous SNV 0.962 0 33 hm5C_associated_SNPs_44958 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920977 1 0.999536712158045 hm5C_site_43789 DeepMRMD:1;iRNA_m5C:0.999536712158045 43790 chr12 110474085 110474085 1 + C T UCEC 110474069 + 110474049 110474089 41 ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTCGAAT ACATTTGTCTTTGCCAGGAACTTTCAGGACCAGCTTTGAAT < 41bp 1 0.0313281594499055 1 0.0497825741767883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110474069 chr12:110474085 nonsynonymous SNV 0.995 1 37 hm5C_associated_SNPs_44959 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43790 DeepMRMD:1;iRNA_m5C:0.999536712157815 43791 chr3 47361148 47361148 1 + G A UCEC 47361152 + 47361132 47361172 41 TTTGCCCACAGATTGGGGACCACAAATTCAGTGCCCACCGG TTTGCCCACAGATTGGAGACCACAAATTCAGTGCCCACCGG < 41bp 1 0.58228118416686 1 0.1956847012043 experiment 0.83543763166628 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47361152 chr3:47361148 synonymous SNV . 0 17 hm5C_associated_SNPs_44961 0 0 1 0 1 Cytosol 1 0.500231646248868 1 0.999536707502264 hm5C_site_43791 DeepMRMD:1;iRNA_m5C:0.999536707502264 43792 chr5 132400724 132400724 1 + A C UCEC 132400719 + 132400699 132400739 41 TCGTTCAATTGGAGCAGCAGCTAAAAGCCAGGTAAAGTTTC TCGTTCAATTGGAGCAGCAGCTAAACGCCAGGTAAAGTTTC < 41bp 1 0.427401082611419 1 0.288387417793274 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132400719 chr5:132400724 nonsynonymous SNV 0.999 2 26 hm5C_associated_SNPs_44962 0 0 1 0 2 Cytosol 1 0.50023164383676 1 0.99953671232648 hm5C_site_43792 DeepMRMD:1;iRNA_m5C:0.99953671232648 43793 chr14 21462714 21462714 1 + C T UCEC 21462722 + 21462702 21462742 41 GTGGTTCAGAATCTGGGGAGCCTTATATTCCAGGTGTCTTT GTGGTTCAGAATTTGGGGAGCCTTATATTCCAGGTGTCTTT < 41bp 1 0.0727427132485525 1 0.0158212780952454 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL17 ENSG00000165792 CDS Human protein_coding chr14:21462722 chr14:21462714 nonsynonymous SNV 0.786 2 13 hm5C_associated_SNPs_44963 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43793 DeepMRMD:1;iRNA_m5C:0.999536712157815 43794 chr9 106901525 106901525 1 + C A UCEC 106901519 + 106901499 106901539 41 CTACAGTAGCCAGATTTACTCAATGTCAAAATGGAAAGATT CTACAGTAGCCAGATTTACTCAATGTAAAAATGGAAAGATT < 41bp 1 0.324799266981623 1 0.818899154663086 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106901519 chr9:106901525 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_44964 0 0 1 0 0 Cytosol 1 0.500232605017633 0.362201690673828 0.999534789964734 hm5C_site_43794 DeepMRMD:0.362201690673828;iRNA_m5C:0.999534789964734 43795 chr6 47580230 47580230 1 + A G UCEC 47580216 + 47580196 47580236 41 ACTTTGTTTTTAGGAAAGAACTGGAAAAACTGCGAAAAGAT ACTTTGTTTTTAGGAAAGAACTGGAAAAACTGCGGAAAGAT < 41bp 1 0.686353175742567 1 0.412574708461761 experiment 0.627293648514866 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47580216 chr6:47580230 synonymous SNV . 0 35 hm5C_associated_SNPs_44965 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43795 DeepMRMD:1;iRNA_m5C:0.999536712157815 43796 chr12 56428847 56428847 1 + A T UCEC 56428827 + 56428807 56428847 41 ACCATTGTGGTGGGCCGGCACAGTCCTGCCTACGCCAAAGA ACCATTGTGGTGGGCCGGCACAGTCCTGCCTACGCCAAAGT < 41bp 1 0.262405262580271 1 0.251558810472488 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56428827 chr12:56428847 nonsynonymous SNV 1.000 3 41 hm5C_associated_SNPs_44966 0 0 0 0 0 Cytosol 1 0.500231646062535 1 0.999536707874929 hm5C_site_43796 DeepMRMD:1;iRNA_m5C:0.999536707874929 43797 chr5 167943842 167943842 1 + A C UCEC 167943826 + 167943806 167943846 41 TGCTGCTCAGACATCCGTTGCGTATGGCTGCATCAAATATG TGCTGCTCAGACATCCGTTGCGTATGGCTGCATCAACTATG < 41bp 1 0.183129292660315 1 0.033019095659256 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167943826 chr5:167943842 nonsynonymous SNV 0.995 4 37 hm5C_associated_SNPs_44967 0 0 1 0 1 Nucleus 1 0.500231647899843 1 0.999536704200314 hm5C_site_43797 DeepMRMD:1;iRNA_m5C:0.999536704200314 43798 chr10 102112203 102112203 1 + C T UCEC 102112188 + 102112168 102112208 41 CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTTGGCTG < 41bp 1 0.326734287319093 1 0.573358297348022 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102112188 chr10:102112203 nonsynonymous SNV 0.037 3 36 hm5C_associated_SNPs_44968 0 0 1 0 2 Ribosome 1 0.500231643921832 0.853283405303956 0.999536712156336 hm5C_site_43798 DeepMRMD:0.853283405303956;iRNA_m5C:0.999536712156336 43799 chr22 26880025 26880025 1 + T C UCEC 26880006 + 26879986 26880026 41 AGAGAGGCGGCGCCCCGGGGCCCCGAGGCGGAGTTCGAGTC AGAGAGGCGGCGCCCCGGGGCCCCGAGGCGGAGTTCGAGCC < 41bp 1 0.557833368194331 1 0.180821627378464 experiment 0.884333263611338 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SRRD ENSG00000100104 CDS Human protein_coding chr22:26880006 chr22:26880025 nonsynonymous SNV 0.668 0 40 hm5C_associated_SNPs_44969 0 0 1 0 2 Ribosome 1 0.500231643921096 1 0.999536712157809 hm5C_site_43799 DeepMRMD:1;iRNA_m5C:0.999536712157809 43800 chr4 148796254 148796254 1 + G T UCEC 148796249 + 148796229 148796269 41 AGACAGAATCCCAAGGACCACAAACGAGCAAGTCAGTTTAC AGACAGAATCCCAAGGACCACAAACTAGCAAGTCAGTTTAC < 41bp 1 0.240555320843519 1 0.303517162799835 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148796249 chr4:148796254 nonsynonymous SNV 0.997 2 26 hm5C_associated_SNPs_44970 0 0 1 0 2 Nucleus 1 0.500231643927419 1 0.999536712145162 hm5C_site_43800 DeepMRMD:1;iRNA_m5C:0.999536712145162 43801 chr13 103299677 103299677 1 + G A UCEC 103299672 + 103299652 103299692 41 GAACAAAAGACAGATGGGTTCAGGCGATGCCTATCCACATC GAACAAAAGACAGATGGGTTCAGGCAATGCCTATCCACATC < 41bp 1 0.623086651559163 1 0.517963707447052 experiment 0.753826696881675 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPP2 ENSG00000134900 CDS Human protein_coding chr13:103299672 chr13:103299677 nonsynonymous SNV 0.993 4 26 hm5C_associated_SNPs_44971 0 0 0 0 1 Nucleus 1 0.500231643921043 0.964072585105896 0.999536712157914 hm5C_site_43801 DeepMRMD:0.964072585105896;iRNA_m5C:0.999536712157914 43802 chr15 77224770 77224770 1 + G T UCEC 77224764 + 77224744 77224784 41 CAAAAAAGACTGCAGGCGATCATAAAGAAAATCGACTTGGA CAAAAAAGACTGCAGGCGATCATAAATAAAATCGACTTGGA < 41bp 1 0.618046960830372 1 0.252286672592163 experiment 0.763906078339256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RCN2 ENSG00000117906 CDS Human protein_coding chr15:77224764 chr15:77224770 nonsynonymous SNV 0.998 1 27 hm5C_associated_SNPs_44972 0 0 1 0 2 Ribosome 1 0.500231643921002 1 0.999536712157995 hm5C_site_43802 DeepMRMD:1;iRNA_m5C:0.999536712157995 43803 chr5 118484577 118484577 1 + C A UCEC 118484585 + 118484565 118484605 41 GGAAAAATTGATCTTGCATACATTTGGGAAGAATGGCCATT GGAAAAATTGATATTGCATACATTTGGGAAGAATGGCCATT < 41bp 1 0.0333661473827167 1 0.0391447842121124 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DMXL1 ENSG00000172869 CDS Human protein_coding chr5:118484585 chr5:118484577 nonsynonymous SNV 0.013 0 13 hm5C_associated_SNPs_44973 0 0 1 0 0 Cytosol 1 0.500231643799608 1 0.999536712400783 hm5C_site_43803 DeepMRMD:1;iRNA_m5C:0.999536712400783 43804 chr3 52233360 52233360 1 + A G UCEC 52233380 + 52233360 52233400 41 AAGATGATGGAAGTTGGGGCCAAGCCAGCCCCTCGGGCATT GAGATGATGGAAGTTGGGGCCAAGCCAGCCCCTCGGGCATT < 41bp 1 0.479157550188165 1 0.470909088850021 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233380 chr3:52233360 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_44974 0 0 1 0 0 Cytosol 1 0.500231643922881 1 0.999536712154239 hm5C_site_43804 DeepMRMD:1;iRNA_m5C:0.999536712154239 43805 chr1 9416618 9416618 1 + G A UCEC 9416605 + 9416585 9416625 41 TAGTGAGTGCCGTCTGGGGCCACTGTGAGATCCGAATGCGC TAGTGAGTGCCGTCTGGGGCCACTGTGAGATCCAAATGCGC < 41bp 1 0.209712270214966 1 0.134735524654388 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPSB1 ENSG00000171621 CDS Human protein_coding chr1:9416605 chr1:9416618 nonsynonymous SNV 1.000 2 34 hm5C_associated_SNPs_44975 0 0 1 0 1 nucleus 1 0.500231638922225 1 0.99953672215555 hm5C_site_43805 DeepMRMD:1;iRNA_m5C:0.99953672215555 43806 chr6 160494418 160494418 1 + A G UCEC 160494408 + 160494388 160494428 41 TTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCAT TTCGTGTGCAGGCCTGAGGCCAGGCCAACCGATAGGCCCAT < 41bp 1 0.322356472869142 1 0.850769996643066 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494408 chr6:160494418 nonsynonymous SNV 0.701 0 31 hm5C_associated_SNPs_44976 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644008584 0.298460006713868 0.999536711982832 hm5C_site_43806 DeepMRMD:0.298460006713868;iRNA_m5C:0.999536711982832 43807 chr4 87968660 87968660 1 + C T UCEC 87968645 + 87968625 87968665 41 AATCCCCTGAACTGAAACCACTGCCGGAGGACTATCGACAG AATCCCCTGAACTGAAACCACTGCCGGAGGACTATTGACAG < 41bp 1 0.358364369154841 1 0.354528784751892 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AFF1 ENSG00000172493 CDS Human protein_coding chr4:87968645 chr4:87968660 stopgain 0.118 0 36 hm5C_associated_SNPs_44977 0 0 1 0 1 Nucleus 1 0.500231643925443 1 0.999536712149115 hm5C_site_43807 DeepMRMD:1;iRNA_m5C:0.999536712149115 43808 chr6 13616699 13616699 1 + G T UCEC 13616704 + 13616684 13616724 41 CATTCCAAAAGAAAAGAAAACTCCTTCCAGACACTATTTTG CATTCCAAAAGAAAATAAAACTCCTTCCAGACACTATTTTG < 41bp 1 0.343524840625492 1 0.241240590810776 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOL7 ENSG00000225921 CDS Human protein_coding chr6:13616704 chr6:13616699 nonsynonymous SNV 0.996 4 16 hm5C_associated_SNPs_44978 0 0 1 0 2 Ribosome 1 0.50023157414179 1 0.99953685171642 hm5C_site_43808 DeepMRMD:1;iRNA_m5C:0.99953685171642 43809 chr16 56501900 56501900 1 + T C UCEC 56501910 + 56501890 56501930 41 TTGAAGAAAGTTCTGAAATTCTCCTGAAGGAGTTTCTTAAG TTGAAGAAAGCTCTGAAATTCTCCTGAAGGAGTTTCTTAAG < 41bp 1 0.576673850569989 1 0.917631506919861 experiment 0.846652298860023 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56501910 chr16:56501900 synonymous SNV . 0 11 hm5C_associated_SNPs_44979 0 0 1 0 2 Ribosome 1 0.500231643923411 0.164736986160278 0.999536712153178 hm5C_site_43809 DeepMRMD:0.164736986160278;iRNA_m5C:0.999536712153178 43810 chr20 39741481 39741481 1 + G T UCEC 39741461 + 39741441 39741481 41 AATACGAGACTGCTCGGCGGCTGAAAAAATGTGTGGACAAG AATACGAGACTGCTCGGCGGCTGAAAAAATGTGTGGACAAT < 41bp 1 0.686787831518115 1 0.460848480463028 experiment 0.626424336963771 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39741461 chr20:39741481 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_44981 0 0 1 0 1 Nucleus 1 0.50023164414412 1 0.999536711711759 hm5C_site_43810 DeepMRMD:1;iRNA_m5C:0.999536711711759 43811 chr11 65827418 65827418 1 + G A UCEC 65827410 + 65827390 65827430 41 CAAACGGGGCATTGAGAAGCCCCCCTTCGAGCTGCCAGACT CAAACGGGGCATTGAGAAGCCCCCCTTCAAGCTGCCAGACT < 41bp 1 0.170132514294629 1 0.0500862002372742 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827410 chr11:65827418 nonsynonymous SNV 0.992 2 29 hm5C_associated_SNPs_44982 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43811 DeepMRMD:1;iRNA_m5C:0.999536712157815 43812 chr5 54635878 54635878 1 + A C UCEC 54635889 + 54635869 54635909 41 CAGCGTGTAATATTTACCAGCCCAATTAAGGCTCTGAGTAA CAGCGTGTACTATTTACCAGCCCAATTAAGGCTCTGAGTAA < 41bp 1 0.376680492465229 1 0.351960837841034 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54635889 chr5:54635878 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_44983 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43812 DeepMRMD:1;iRNA_m5C:0.999536712157815 43813 chr1 65871742 65871742 1 + G A UCEC 65871740 + 65871720 65871760 41 CCCCACTCCTCTCCCCAGAACCGACCCAACTACAACGTGAG CCCCACTCCTCTCCCCAGAACCAACCCAACTACAACGTGAG < 41bp 1 0.0319892245938882 1 0.10583359003067 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65871740 chr1:65871742 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_44984 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43813 DeepMRMD:1;iRNA_m5C:0.999536712157815 43814 chr7 116199070 116199070 1 + T C UCEC 116199065 + 116199045 116199085 41 TTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTCACTGT TTTGACGGCATTTGGAAGGCCAGCTCCACCACCTTCACTGT < 41bp 1 0.3145329439521 1 0.285999715328217 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CAV1 ENSG00000105974 CDS Human protein_coding chr7:116199065 chr7:116199070 nonsynonymous SNV 1.000 2 26 hm5C_associated_SNPs_44985 0 0 0 3 1 Ribosome 1 0.500231433362126 1 0.999537133275748 hm5C_site_43814 DeepMRMD:1;iRNA_m5C:0.999537133275748 43815 chr3 179462921 179462921 1 + G T UCEC 179462925 + 179462905 179462945 41 GCCAAGATACCATTTAGTGCCTGCCTTCAGGCCTTCTCTGA GCCAAGATACCATTTATTGCCTGCCTTCAGGCCTTCTCTGA < 41bp 1 0.472504255101443 1 0.0346703231334686 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179462925 chr3:179462921 nonsynonymous SNV 0.824 1 17 hm5C_associated_SNPs_44986 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43815 DeepMRMD:1;iRNA_m5C:0.999536712157815 43816 chr20 39721205 39721205 1 + G T UCEC 39721195 + 39721175 39721215 41 ATTTGCCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGT ATTTGCCCCACCATATGAGCCTCTTCCAGATAATGTCAAGT < 41bp 1 0.0719054169937073 1 0.0442748665809631 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721195 chr20:39721205 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_44987 0 0 1 5 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_43816 DeepMRMD:1;iRNA_m5C:0.999536712157814 43817 chr19 55899675 55899675 1 + G A UCEC 55899674 + 55899654 55899694 41 CTGTGATGGTGAAGAGGAAGCGGACCCGCCCCACCAAGAGC CTGTGATGGTGAAGAGGAAGCAGACCCGCCCCACCAAGAGC < 41bp 1 0.571592297883831 1 0.55489194393158 experiment 0.856815404232338 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899674 chr19:55899675 nonsynonymous SNV 0.901 1 22 hm5C_associated_SNPs_44988 0 0 1 0 1 Cytosol 1 0.500231645860255 0.89021611213684 0.99953670827949 hm5C_site_43817 DeepMRMD:0.89021611213684;iRNA_m5C:0.99953670827949 43818 chr11 57373951 57373951 1 + A G UCEC 57373933 + 57373913 57373953 41 ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATAAA ACCAGAATGGAACCCTTTCACTTCAAAAACTCAGTTATGAA < 41bp 1 0.51905653158845 1 0.414606273174286 experiment 0.9618869368231 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373933 chr11:57373951 nonsynonymous SNV 0.654 2 39 hm5C_associated_SNPs_44989 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643539809 1 0.999536712920383 hm5C_site_43818 DeepMRMD:1;iRNA_m5C:0.999536712920383 43819 chr1 110561689 110561689 1 + T G UCEC 110561676 + 110561656 110561696 41 CTCTCTTACCTTTCCAGGGTCGTCTACTCAATTTGAGCTGC CTCTCTTACCTTTCCAGGGTCGTCTACTCAATTGGAGCTGC < 41bp 1 0.133775334415224 1 0.0380018651485443 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110561676 chr1:110561689 nonsynonymous SNV 1.000 5 34 hm5C_associated_SNPs_44990 0 0 1 0 1 Ribosome 1 0.500231643921095 1 0.999536712157811 hm5C_site_43819 DeepMRMD:1;iRNA_m5C:0.999536712157811 43820 chr2 29344289 29344289 1 + A G UCEC 29344282 + 29344262 29344302 41 TAGAGGACCTTCCAGATTTTCCATTAGAAGGAAATCCTTTG TAGAGGACCTTCCAGATTTTCCATTAGGAGGAAATCCTTTG < 41bp 1 0.0814796821496358 1 0.0441745519638062 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29344282 chr2:29344289 nonsynonymous SNV 0.992 3 28 hm5C_associated_SNPs_44991 0 0 1 1 1 nucleus 1 0.500231643926591 1 0.999536712146817 hm5C_site_43820 DeepMRMD:1;iRNA_m5C:0.999536712146817 43821 chr19 35828857 35828857 1 + G T UCEC 35828874 + 35828854 35828894 41 GAAGTACTGCTGTCAGGTCTCCAATGACGTGGGCCCGGGAA GAATTACTGCTGTCAGGTCTCCAATGACGTGGGCCCGGGAA < 41bp 1 0.295165090962839 1 0.773656666278839 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD22 ENSG00000012124 CDS Human protein_coding chr19:35828874 chr19:35828857 nonsynonymous SNV 0.026 0 4 hm5C_associated_SNPs_44992 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643923312 0.452686667442322 0.999536712153376 hm5C_site_43821 DeepMRMD:0.452686667442322;iRNA_m5C:0.999536712153376 43822 chr10 4877951 4877951 1 + G A UCEC 4877959 + 4877939 4877979 41 TTGCCTCTGGACGAGAGCAACATGGTTATTCCCAGTGACAC TTGCCTCTGGACAAGAGCAACATGGTTATTCCCAGTGACAC < 41bp 1 0.552264070577361 1 0.126085013151169 experiment 0.895471858845277 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4877959 chr10:4877951 nonsynonymous SNV 0.002 0 13 hm5C_associated_SNPs_44993 0 0 1 0 2 chromatin 1 0.50023164361368 1 0.999536712772641 hm5C_site_43822 DeepMRMD:1;iRNA_m5C:0.999536712772641 43823 chr16 89970564 89970564 1 + G A UCEC 89970558 + 89970538 89970578 41 TGCTCGAGTCTTGCAGTGTGCGGCCCGACGCCAGCGTTTCC TGCTCGAGTCTTGCAGTGTGCGGCCCAACGCCAGCGTTTCC < 41bp 1 0.448661555712674 1 0.374418824911118 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TCF25 ENSG00000141002 CDS Human protein_coding chr16:89970558 chr16:89970564 nonsynonymous SNV 0.018 4 27 hm5C_associated_SNPs_44995 0 0 1 0 2 Cytosol 1 0.500231643920593 1 0.999536712158813 hm5C_site_43823 DeepMRMD:1;iRNA_m5C:0.999536712158813 43824 chr1 162725003 162725003 1 + A G UCEC 162725020 + 162725000 162725040 41 CCCATTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA CCCGTTGTAGCCAGATTTGTCCGGTTCATTCCAGTCACCGA < 41bp 1 0.485608793241523 1 0.807188391685486 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDR2 ENSG00000162733 CDS Human protein_coding chr1:162725020 chr1:162725003 nonsynonymous SNV 0.915 2 4 hm5C_associated_SNPs_44996 0 0 0 0 2 nucleolus 1 0.500230949936094 0.385623216629028 0.999538100127811 hm5C_site_43824 DeepMRMD:0.385623216629028;iRNA_m5C:0.999538100127811 43825 chr22 25019101 25019101 1 + A C UCEC 25019089 + 25019069 25019109 41 TGCAGGGGGCATTGTGACAGCTGAGGACCTGAACAACTACC TGCAGGGGGCATTGTGACAGCTGAGGACCTGACCAACTACC < 41bp 1 0.597291432386738 1 0.425714790821075 experiment 0.805417135226523 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GGT1 ENSG00000100031 CDS Human protein_coding chr22:25019089 chr22:25019101 nonsynonymous SNV 0.985 0 33 hm5C_associated_SNPs_44997 0 0 0 0 1 exosome 1 0.500231669221416 1 0.999536661557167 hm5C_site_43825 DeepMRMD:1;iRNA_m5C:0.999536661557167 43826 chr13 92051391 92051391 1 + G A UCEC 92051411 + 92051391 92051431 41 GAAGAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC AAAGAAGTTCGGAAACTTTTCCAGTGGCGGCTGCTGGGAGC < 41bp 1 0.489087198896982 1 0.748411178588867 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GPC5 ENSG00000179399 CDS Human protein_coding chr13:92051411 chr13:92051391 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_44998 0 0 0 0 1 Nucleus 1 0.500231643921092 0.503177642822266 0.999536712157815 hm5C_site_43826 DeepMRMD:0.503177642822266;iRNA_m5C:0.999536712157815 43827 chr22 25007054 25007054 1 + G T UCEC 25007048 + 25007028 25007068 41 CCCCGTGGGTGCAGCAGAGCCATGAAGAAGAAGTTAGTGGT CCCCGTGGGTGCAGCAGAGCCATGAATAAGAAGTTAGTGGT < 41bp 1 0.617481216949365 1 0.390402674674988 experiment 0.765037566101269 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GGT1 ENSG00000100031 CDS Human protein_coding chr22:25007048 chr22:25007054 nonsynonymous SNV 0.827 1 27 hm5C_associated_SNPs_44999 0 0 0 0 2 exosome 1 0.500231643920822 1 0.999536712158357 hm5C_site_43827 DeepMRMD:1;iRNA_m5C:0.999536712158357 43828 chr5 73989527 73989527 1 + G A UCEC 73989526 + 73989506 73989546 41 ACAGAGTTTGGGGAGCATTACGAGGTAAGTTCCATGCAGTT ACAGAGTTTGGGGAGCATTACAAGGTAAGTTCCATGCAGTT < 41bp 1 0.633911514947067 1 0.838638603687286 experiment 0.732176970105867 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control HEXB ENSG00000049860 CDS Human protein_coding chr5:73989526 chr5:73989527 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_45000 0 0 1 0 2 Cytosol 1 0.500231643921094 0.322722792625428 0.999536712157812 hm5C_site_43828 DeepMRMD:0.322722792625428;iRNA_m5C:0.999536712157812 43829 chr16 30727510 30727510 1 + A G UCEC 30727523 + 30727503 30727543 41 TGACTTCATGGCACAGACCACGTAAGGGAGGAAGGAGGGTG TGACTTCGTGGCACAGACCACGTAAGGGAGGAAGGAGGGTG < 41bp 1 0.239952558858799 1 0.139658063650131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SRCAP ENSG00000080603 CDS Human protein_coding chr16:30727523 chr16:30727510 nonsynonymous SNV 1.000 2 8 hm5C_associated_SNPs_45001 0 0 1 0 1 Ribosome 1 0.500231639690583 1 0.999536720618835 hm5C_site_43829 DeepMRMD:1;iRNA_m5C:0.999536720618835 43830 chr2 220502412 220502412 1 + G A UCEC 220502432 + 220502412 220502452 41 GCCCCCCCAGCCCGAGGAACCAGCCCAATACGGCACTGCTC ACCCCCCCAGCCCGAGGAACCAGCCCAATACGGCACTGCTC < 41bp 1 0.383646789938077 1 0.650378465652466 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220502432 chr2:220502412 nonsynonymous SNV 0.575 0 1 hm5C_associated_SNPs_45002 0 0 0 0 0 Cytosol 1 0.50023165735275 0.699243068695068 0.9995366852945 hm5C_site_43830 DeepMRMD:0.699243068695068;iRNA_m5C:0.9995366852945 43831 chr11 73075572 73075572 1 + C A UCEC 73075552 + 73075532 73075572 41 ACCTTGGGCACCCAGGGGAGCCCCATCACCAAGATGGTATC ACCTTGGGCACCCAGGGGAGCCCCATCACCAAGATGGTATA < 41bp 1 0.160416267551314 1 0.0451797544956207 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73075552 chr11:73075572 nonsynonymous SNV 0.999 1 41 hm5C_associated_SNPs_45003 0 0 1 0 2 Cytosol 1 0.50023164392114 1 0.99953671215772 hm5C_site_43831 DeepMRMD:1;iRNA_m5C:0.99953671215772 43832 chr1 110766332 110766332 1 + C T UCEC 110766341 + 110766321 110766361 41 GTCAACAACTTCGGCATGTACTACTCCCTGGCCATGGCCAA GTCAACAACTTTGGCATGTACTACTCCCTGGCCATGGCCAA < 41bp 1 0.273435138920228 1 0.0363330841064453 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110766341 chr1:110766332 synonymous SNV . 0 12 hm5C_associated_SNPs_45004 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43832 DeepMRMD:1;iRNA_m5C:0.999536712157815 43833 chr15 91358383 91358383 1 + C A UCEC 91358367 + 91358347 91358387 41 TAGAAAGATATCTTCCAAAACGAAATCCTCCAGCATCATTG TAGAAAGATATCTTCCAAAACGAAATCCTCCAGCATAATTG < 41bp 1 0.610418465313931 1 0.0734100639820099 experiment 0.779163069372138 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91358367 chr15:91358383 synonymous SNV . 0 37 hm5C_associated_SNPs_45005 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43833 DeepMRMD:1;iRNA_m5C:0.999536712157815 43834 chr14 76455293 76455293 1 + G T UCEC 76455279 + 76455259 76455299 41 AGTCAGCGCAGGCCGAGAATCACCTCAATGGCAAGAATTCC AGTCAGCGCAGGCCGAGAATCACCTCAATGGCAATAATTCC < 41bp 1 0.556809776083397 1 0.133593499660492 experiment 0.886380447833207 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IFT43 ENSG00000119650 CDS Human protein_coding chr14:76455279 chr14:76455293 nonsynonymous SNV 0.994 1 35 hm5C_associated_SNPs_45006 0 0 1 0 2 Ribosome 1 0.500231312438437 1 0.999537375123126 hm5C_site_43834 DeepMRMD:1;iRNA_m5C:0.999537375123126 43835 chr15 50789390 50789390 1 + C A UCEC 50789404 + 50789384 50789424 41 AGAAATCTGGAAGTTACCACCTGTGCTTTTAGTGCATCTGA AGAAATATGGAAGTTACCACCTGTGCTTTTAGTGCATCTGA < 41bp 1 0.34613480514281 1 0.317891657352448 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control USP8 ENSG00000138592 CDS Human protein_coding chr15:50789404 chr15:50789390 synonymous SNV . 0 7 hm5C_associated_SNPs_45007 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43835 DeepMRMD:1;iRNA_m5C:0.999536712157815 43836 chr11 66009076 66009076 1 + T G UCEC 66009069 + 66009049 66009089 41 CTGCCCCATAGTGGGGAGGCCCAGCTTTCTGGCACCATGGC CTGCCCCATAGTGGGGAGGCCCAGCTTGCTGGCACCATGGC < 41bp 1 0.0825280080159562 1 0.0996669232845306 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PACS1 ENSG00000175115 CDS Human protein_coding chr11:66009069 chr11:66009076 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_45008 0 0 0 0 1 Cytosol 1 0.500231652183347 1 0.999536695633306 hm5C_site_43836 DeepMRMD:1;iRNA_m5C:0.999536695633306 43837 chr16 81654499 81654499 1 + C T UCEC 81654513 + 81654493 81654533 41 TACCTGCGAGACCAGTGGTTCCATTCTCTGCAATGGAAGGT TACCTGTGAGACCAGTGGTTCCATTCTCTGCAATGGAAGGT < 41bp 1 0.0148744096315347 1 0.0713131129741669 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CMIP ENSG00000153815 CDS Human protein_coding chr16:81654513 chr16:81654499 stopgain 0.997 1 7 hm5C_associated_SNPs_45009 0 0 1 0 2 Cytosol 1 0.500231430910854 1 0.999537138178292 hm5C_site_43837 DeepMRMD:1;iRNA_m5C:0.999537138178292 43838 chr5 179151663 179151663 1 + G T UCEC 179151661 + 179151641 179151681 41 TTTGGGGAACATTTCAGAAACAGACCAGTGGTATGGAGTAT TTTGGGGAACATTTCAGAAACATACCAGTGGTATGGAGTAT < 41bp 1 0.0824494833728036 1 0.0570405721664429 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179151661 chr5:179151663 nonsynonymous SNV 0.859 0 23 hm5C_associated_SNPs_45010 0 0 1 0 1 Nucleus 1 0.500231643513804 1 0.999536712972391 hm5C_site_43838 DeepMRMD:1;iRNA_m5C:0.999536712972391 43839 chr5 179151663 179151663 1 + G T UCEC 179151665 + 179151645 179151685 41 GGGAACATTTCAGAAACAGACCAGTGGTATGGAGTATAAGA GGGAACATTTCAGAAACATACCAGTGGTATGGAGTATAAGA < 41bp 1 0.227571293629297 1 0.0496888756752014 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CANX ENSG00000127022 CDS Human protein_coding chr5:179151665 chr5:179151663 nonsynonymous SNV 0.859 0 19 hm5C_associated_SNPs_45011 0 0 1 0 1 Nucleus 1 0.50023164404722 1 0.999536711905559 hm5C_site_43839 DeepMRMD:1;iRNA_m5C:0.999536711905559 43840 chr11 61631196 61631196 1 + C T UCEC 61631203 + 61631183 61631223 41 CAGCCACCTGCAACGTGGAGCAGTCCTTCTTCAACGACTGG CAGCCACCTGCAATGTGGAGCAGTCCTTCTTCAACGACTGG < 41bp 1 0.0275353349781799 1 0.336595147848129 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61631203 chr11:61631196 synonymous SNV . 0 14 hm5C_associated_SNPs_45013 0 0 1 0 2 Ribosome 1 0.500232999420256 1 0.999534001159488 hm5C_site_43840 DeepMRMD:1;iRNA_m5C:0.999534001159488 43841 chr11 6631711 6631711 1 + C T UCEC 6631708 + 6631688 6631728 41 CGCAGGTGGCATTGGAAGGCCTTCGGCCTACCATCCCACCA CGCAGGTGGCATTGGAAGGCCTTTGGCCTACCATCCCACCA < 41bp 1 0.14992359041317 1 0.24207216501236 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6631708 chr11:6631711 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_45014 0 0 1 0 1 Endoplasmic reticulum 1 0.500231766877118 1 0.999536466245763 hm5C_site_43841 DeepMRMD:1;iRNA_m5C:0.999536466245763 43842 chr2 207174854 207174854 1 + G T UCEC 207174847 + 207174827 207174867 41 TTTGATGATGACTGTGAGACCAAAAAAGTTTCTTCGAAGGG TTTGATGATGACTGTGAGACCAAAAAATTTTCTTCGAAGGG < 41bp 1 0.43571775377514 1 0.185720443725586 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207174847 chr2:207174854 nonsynonymous SNV 0.005 0 28 hm5C_associated_SNPs_45015 0 0 1 0 0 Nucleus 1 0.50023164392085 1 0.9995367121583 hm5C_site_43842 DeepMRMD:1;iRNA_m5C:0.9995367121583 43843 chr5 82833372 82833372 1 + A C UCEC 82833367 + 82833347 82833387 41 GAATTTGAAAGTGGAACAGCCAAAAAAGGGGCAGAATCAGT GAATTTGAAAGTGGAACAGCCAAAACAGGGGCAGAATCAGT < 41bp 1 0.152248303591033 1 0.22636091709137 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82833367 chr5:82833372 nonsynonymous SNV 0.000 1 26 hm5C_associated_SNPs_45016 0 0 1 0 0 Ribosome 1 0.500231643923305 1 0.99953671215339 hm5C_site_43843 DeepMRMD:1;iRNA_m5C:0.99953671215339 43844 chr1 16349147 16349147 1 + C A UCEC 16349157 + 16349137 16349177 41 GTGAGGGCTTCTCAGGGGACCCTGTGACTCTGCAGGAGCTG GTGAGGGCTTATCAGGGGACCCTGTGACTCTGCAGGAGCTG < 41bp 1 0.144574892175189 1 0.09518101811409 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16349157 chr1:16349147 nonsynonymous SNV 0.227 1 11 hm5C_associated_SNPs_45017 0 0 0 0 2 Endoplasmic reticulum 1 0.500231947349166 1 0.999536105301667 hm5C_site_43844 DeepMRMD:1;iRNA_m5C:0.999536105301667 43845 chr4 103500147 103500147 1 + C G UCEC 103500160 + 103500140 103500180 41 CTGGCAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC CTGGCAGGTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC < 41bp 1 0.681574761970572 1 0.358169585466385 experiment 0.636850476058855 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103500160 chr4:103500147 nonsynonymous SNV 1.000 1 8 hm5C_associated_SNPs_45018 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43845 DeepMRMD:1;iRNA_m5C:0.999536712157815 43846 chr3 184038428 184038428 1 + G A UCEC 184038413 + 184038393 184038433 41 TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCGAGATC TCATCTTATAGCTTTCTTTCCCCAGATCCGAATTCAAGATC < 41bp 1 0.137330932952925 1 0.280240654945374 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184038413 chr3:184038428 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_45020 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43846 DeepMRMD:1;iRNA_m5C:0.999536712157815 43847 chr6 33662782 33662782 1 + C T UCEC 33662799 - 33662779 33662819 41 AGCTTCATGGTGGAGTTGAGCTTGTCCTGGAGAATCCGAAT AGCTTCATGGTGGAGTTGAGCTTGTCCTGGAGAATCCAAAT < 41bp 1 0.258561425482551 1 0.0528092086315155 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33662799 chr6:33662782 nonsynonymous SNV 0.992 4 38 hm5C_associated_SNPs_45021 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921174 1 0.999536712157651 hm5C_site_43847 DeepMRMD:1;iRNA_m5C:0.999536712157651 43848 chr11 85977204 85977204 1 + G T UCEC 85977193 + 85977173 85977213 41 TCTCTTAAACTTTGGAGGATCAATTCAAAGAGAATGATGAA TCTCTTAAACTTTGGAGGATCAATTCAAAGATAATGATGAA < 41bp 1 0.170166720033489 1 0.165116459131241 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EED ENSG00000074266 CDS Human protein_coding chr11:85977193 chr11:85977204 nonsynonymous SNV 1.000 1 32 hm5C_associated_SNPs_45022 0 0 1 13 2 Ribosome 1 0.500231643924219 1 0.999536712151563 hm5C_site_43848 DeepMRMD:1;iRNA_m5C:0.999536712151563 43849 chr7 128477720 128477720 1 + C A UCEC 128477710 + 128477690 128477730 41 GGCATCGAGCCACAGGGCAACACCGTGCTGCAGCCTGCCCA GGCATCGAGCCACAGGGCAACACCGTGCTGAAGCCTGCCCA < 41bp 1 0.414441336729198 1 0.206689924001694 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FLNC ENSG00000128591 CDS Human protein_coding chr7:128477710 chr7:128477720 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_45023 0 0 0 0 2 chromatin 1 0.500231639320789 1 0.999536721358423 hm5C_site_43849 DeepMRMD:1;iRNA_m5C:0.999536721358423 43850 chr2 73681183 73681183 1 + T C UCEC 73681178 + 73681158 73681198 41 AATGCAGAGGAAGAGGAAAGCCGGGTACGAGCACATGGTAA AATGCAGAGGAAGAGGAAAGCCGGGCACGAGCACATGGTAA < 41bp 1 0.238037066782308 1 0.844027161598206 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ALMS1 ENSG00000116127 CDS Human protein_coding chr2:73681178 chr2:73681183 nonsynonymous SNV 0.880 3 26 hm5C_associated_SNPs_45024 0 0 0 0 1 Nucleus 1 0.500231647292529 0.311945676803588 0.999536705414942 hm5C_site_43850 DeepMRMD:0.311945676803588;iRNA_m5C:0.999536705414942 43851 chrX 129063378 129063378 1 + G T UCEC 129063370 + 129063350 129063390 41 ATTTGAAAGGACCATCCAGACCCCCATAGGATCCACATGGA ATTTGAAAGGACCATCCAGACCCCCATATGATCCACATGGA < 41bp 1 0.318961500713839 1 0.0807239413261414 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UTP14A ENSG00000156697 CDS Human protein_coding chrX:129063370 chrX:129063378 stopgain 0.999 1 29 hm5C_associated_SNPs_45025 0 0 0 0 1 Cytosol 1 0.500231717399908 1 0.999536565200184 hm5C_site_43851 DeepMRMD:1;iRNA_m5C:0.999536565200184 43852 chr9 123917083 123917083 1 + T C UCEC 123917066 + 123917046 123917086 41 TAGAAAAATCACTCAAACATCATGAAGATATTGTAGATGAA TAGAAAAATCACTCAAACATCATGAAGATATTGTAGACGAA < 41bp 1 0.341707442567026 1 0.103630632162094 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CNTRL ENSG00000119397 CDS Human protein_coding chr9:123917066 chr9:123917083 synonymous SNV . 0 38 hm5C_associated_SNPs_45026 0 0 0 0 1 chromatin 1 0.500231643928545 1 0.99953671214291 hm5C_site_43852 DeepMRMD:1;iRNA_m5C:0.99953671214291 43853 chr14 75359624 75359624 1 + C T UCEC 75359614 + 75359594 75359634 41 AACCTACAGCAGCGGCAGTTCCTCCCCCTGCAGCACCCATA AACCTACAGCAGCGGCAGTTCCTCCCCCTGTAGCACCCATA < 41bp 1 0.104044110982863 1 0.237326741218567 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DLST ENSG00000119689 CDS Human protein_coding chr14:75359614 chr14:75359624 nonsynonymous SNV 0.654 0 31 hm5C_associated_SNPs_45027 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43853 DeepMRMD:1;iRNA_m5C:0.999536712157815 43854 chr12 122618497 122618497 1 + C T UCEC 122618478 + 122618458 122618498 41 GCAGCCCCACAAAATAGTGCCTGCTCCCAAACCAGAGCCCG GCAGCCCCACAAAATAGTGCCTGCTCCCAAACCAGAGCCTG < 41bp 1 0.117640208208279 1 0.0618515312671661 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MLXIP ENSG00000175727 CDS Human protein_coding chr12:122618478 chr12:122618497 synonymous SNV . 0 40 hm5C_associated_SNPs_45028 0 0 1 0 0 chromatin 1 0.500231643911529 1 0.999536712176941 hm5C_site_43854 DeepMRMD:1;iRNA_m5C:0.999536712176941 43855 chr12 122618497 122618497 1 + C T UCEC 122618483 + 122618463 122618503 41 CCCACAAAATAGTGCCTGCTCCCAAACCAGAGCCCGTGTCC CCCACAAAATAGTGCCTGCTCCCAAACCAGAGCCTGTGTCC < 41bp 1 0.334011361658071 1 0.177632212638855 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MLXIP ENSG00000175727 CDS Human protein_coding chr12:122618483 chr12:122618497 synonymous SNV . 0 35 hm5C_associated_SNPs_45029 0 0 1 0 0 chromatin 1 0.500231644209976 1 0.999536711580048 hm5C_site_43855 DeepMRMD:1;iRNA_m5C:0.999536711580048 43856 chr16 29994487 29994487 1 + G A UCEC 29994488 + 29994468 29994508 41 ATCAGCGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGC ATCAGCGCCTCCAGCCAGAACAGCTCCGTCAACAGCCTAGC < 41bp 1 0.361296423993393 1 0.370896458625793 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994488 chr16:29994487 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_45030 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43856 DeepMRMD:1;iRNA_m5C:0.999536712157815 43857 chr16 29994487 29994487 1 + G A UCEC 29994493 + 29994473 29994513 41 CGCCTCCAGCCAGAGCAGCTCCGTCAACAGCCTAGCAGATG CGCCTCCAGCCAGAACAGCTCCGTCAACAGCCTAGCAGATG < 41bp 1 0.0705609906654147 1 0.137208968400955 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994493 chr16:29994487 nonsynonymous SNV 1.000 4 15 hm5C_associated_SNPs_45031 0 0 1 0 1 Nucleus 1 0.500234964772807 1 0.999530070454385 hm5C_site_43857 DeepMRMD:1;iRNA_m5C:0.999530070454385 Lipid metabolism phenotypes 43858 chr16 58286708 58286708 1 + G A UCEC 58286704 + 58286684 58286724 41 CTAAACTGGAGCCCAGGGATCAGCGACCTCCACGATTATCA CTAAACTGGAGCCCAGGGATCAGCAACCTCCACGATTATCA < 41bp 1 0.648819203354115 1 0.411874383687973 experiment 0.702361593291771 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74775;RNA-BisSeq;SNB19;Control CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58286704 chr16:58286708 nonsynonymous SNV 0.036 0 25 hm5C_associated_SNPs_45032 0 0 0 0 2 Nucleus 1 0.500231643941224 1 0.999536712117551 hm5C_site_43858 DeepMRMD:1;iRNA_m5C:0.999536712117551 43859 chr15 22962524 22962524 1 + G A UCEC 22962534 + 22962514 22962554 41 GCTACGAGACGCTGCTGAAGCAGAGGCATGTGCAGGTGAGC GCTACGAGACACTGCTGAAGCAGAGGCATGTGCAGGTGAGC < 41bp 1 0.668777219909825 1 0.730197191238403 experiment 0.66244556018035 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22962534 chr15:22962524 synonymous SNV . 0 11 hm5C_associated_SNPs_45033 0 0 1 0 2 Cytosol 1 0.500230337360167 0.539605617523194 0.999539325279665 hm5C_site_43859 DeepMRMD:0.539605617523194;iRNA_m5C:0.999539325279665 43860 chr5 140481756 140481756 1 + C T UCEC 140481767 + 140481747 140481787 41 CCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCG CCATCAACGTGGACAACGGCCACCTGTTTGCCCTCAGGTCG < 41bp 1 0.663184211599232 1 0.17403045296669 experiment 0.673631576801536 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140481767 chr5:140481756 nonsynonymous SNV 0.031 1 10 hm5C_associated_SNPs_45034 0 0 0 0 0 exosome 1 0.500231643906493 1 0.999536712187014 hm5C_site_43860 DeepMRMD:1;iRNA_m5C:0.999536712187014 43861 chr2 157406258 157406258 1 + G A UCEC 157406248 + 157406228 157406268 41 ACCCCCAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGC ACCCCCAGACAGGGAAAGTGCGTGTGAGCGACGCACGGTGC < 41bp 1 0.643893585094504 1 0.398078918457031 experiment 0.712212829810992 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406248 chr2:157406258 nonsynonymous SNV 0.040 4 31 hm5C_associated_SNPs_45035 0 0 0 0 1 Endoplasmic reticulum 1 0.500229601046149 1 0.999540797907702 hm5C_site_43861 DeepMRMD:1;iRNA_m5C:0.999540797907702 43862 chr11 67378031 67378031 1 + C T UCEC 67378025 + 67378005 67378045 41 AAGCCCCGCCTGAAGCCCCCCTTCCCCGCAGACGTGGGTAA AAGCCCCGCCTGAAGCCCCCCTTCCCTGCAGACGTGGGTAA < 41bp 1 0.153054170188236 1 0.197046250104904 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378025 chr11:67378031 synonymous SNV . 0 27 hm5C_associated_SNPs_45036 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43862 DeepMRMD:1;iRNA_m5C:0.999536712157815 43863 chr8 145166658 145166658 1 + C T UCEC 145166669 + 145166649 145166689 41 AATTACCTCCGTCTGATCTACGGCTCTGGCCTGCTGGTAGG AATTACCTCTGTCTGATCTACGGCTCTGGCCTGCTGGTAGG < 41bp 1 0.35645118856794 1 0.356596648693085 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166669 chr8:145166658 nonsynonymous SNV 0.016 1 10 hm5C_associated_SNPs_45037 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43863 DeepMRMD:1;iRNA_m5C:0.999536712157815 43864 chr2 135160648 135160648 1 + C T UCEC 135160666 + 135160646 135160686 41 TACGTGAAAAACCATGGTATCCTCAGTGGACGGGACCTGCA TATGTGAAAAACCATGGTATCCTCAGTGGACGGGACCTGCA < 41bp 1 0.221684658075637 1 0.097765326499939 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135160666 chr2:135160648 synonymous SNV . 0 3 hm5C_associated_SNPs_45038 0 0 1 0 2 Ribosome 1 0.500231643922427 1 0.999536712155146 hm5C_site_43864 DeepMRMD:1;iRNA_m5C:0.999536712155146 43865 chr20 44038657 44038657 1 + C T UCEC 44038672 + 44038652 44038692 41 TCCTCCGACTCCTCCACCAACCTGCATAGCCCAAATCCAAG TCCTCTGACTCCTCCACCAACCTGCATAGCCCAAATCCAAG < 41bp 1 0.10866299644116 1 0.433663725852966 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DBNDD2 ENSG00000244274 CDS Human protein_coding chr20:44038672 chr20:44038657 synonymous SNV . 0 6 hm5C_associated_SNPs_45040 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_43865 DeepMRMD:1;iRNA_m5C:0.999536712157815 43866 chr13 24242897 24242897 1 + C T UCEC 24242887 + 24242867 24242907 41 CTTCGGATCCCTCACGCAGTCCATCTGTGGCGAGTTTTCAG CTTCGGATCCCTCACGCAGTCCATCTGTGGTGAGTTTTCAG < 41bp 1 0.0938872079919256 1 0.112648338079453 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24242887 chr13:24242897 synonymous SNV . 0 31 hm5C_associated_SNPs_45041 0 0 1 0 1 cytosol 1 0.500231639223506 1 0.999536721552987 hm5C_site_43866 DeepMRMD:1;iRNA_m5C:0.999536721552987 43867 chr19 49593560 49593560 1 + G A UCEC 49593563 + 49593543 49593583 41 CCCAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAA CCCAGGACCCTCGAGATACCCCTCCTCCAACTCGTGCTGAA < 41bp 1 0.0903445810936937 1 0.114778012037277 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593563 chr19:49593560 nonsynonymous SNV 1.000 1 18 hm5C_associated_SNPs_45042 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43867 DeepMRMD:1;iRNA_m5C:0.999536712157815 43868 chr19 49593560 49593560 1 + G A UCEC 49593564 + 49593544 49593584 41 CCAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAAA CCAGGACCCTCGAGATACCCCTCCTCCAACTCGTGCTGAAA < 41bp 1 0.229432457359906 1 0.636249601840973 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49593564 chr19:49593560 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_45043 0 0 1 0 2 Nucleus 1 0.500231643921089 0.727500796318054 0.999536712157821 hm5C_site_43868 DeepMRMD:0.727500796318054;iRNA_m5C:0.999536712157821 43869 chr12 49888752 49888752 1 + G A UCEC 49888749 + 49888729 49888769 41 ATGCCAGAGAATTGGAGGATCCCGAGTCTGCCATGCTAGAT ATGCCAGAGAATTGGAGGATCCCAAGTCTGCCATGCTAGAT < 41bp 1 0.468583194764554 1 0.127526491880417 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SPATS2 ENSG00000123352 CDS Human protein_coding chr12:49888749 chr12:49888752 nonsynonymous SNV 0.478 3 24 hm5C_associated_SNPs_45044 0 0 1 0 1 chromatin 1 0.500237997406245 1 0.999524005187511 hm5C_site_43869 DeepMRMD:1;iRNA_m5C:0.999524005187511 43870 chr12 6969622 6969622 1 + G T UCEC 6969628 + 6969608 6969648 41 CAGCAGGATGCCCAGGAGTTCTTCCTTCACCTTATCAACAT CAGCAGGATGCCCATGAGTTCTTCCTTCACCTTATCAACAT < 41bp 1 0.220630090764477 1 0.0347322523593903 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control USP5 ENSG00000111667 CDS Human protein_coding chr12:6969628 chr12:6969622 nonsynonymous SNV 0.999 1 15 hm5C_associated_SNPs_45045 0 0 1 0 2 Nucleus 1 0.500231644013095 1 0.999536711973809 hm5C_site_43870 DeepMRMD:1;iRNA_m5C:0.999536711973809 43871 chr1 22336306 22336306 1 + A C UCEC 22336287 + 22336267 22336307 41 TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCAC TTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCCC < 41bp 1 0.210150029681012 1 0.0475148856639862 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336287 chr1:22336306 nonsynonymous SNV 0.218 4 40 hm5C_associated_SNPs_45046 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921108 1 0.999536712157783 hm5C_site_43871 DeepMRMD:1;iRNA_m5C:0.999536712157783 43872 chr1 22336306 22336306 1 + A C UCEC 22336290 + 22336270 22336310 41 GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGT GTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCCCGGT < 41bp 1 0.611772930391301 1 0.796551942825317 experiment 0.776454139217399 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336290 chr1:22336306 nonsynonymous SNV 0.218 4 37 hm5C_associated_SNPs_45047 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643922957 0.406896114349366 0.999536712154087 hm5C_site_43872 DeepMRMD:0.406896114349366;iRNA_m5C:0.999536712154087 43873 chr1 22336306 22336306 1 + A C UCEC 22336293 + 22336273 22336313 41 TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTT TCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCCCGGTGTT < 41bp 1 0.3646633056111 1 0.404198706150055 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336293 chr1:22336306 nonsynonymous SNV 0.218 4 34 hm5C_associated_SNPs_45048 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_43873 DeepMRMD:1;iRNA_m5C:0.999536712157815 43874 chr1 22336306 22336306 1 + A C UCEC 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCATCTGGAAGCCCCCGGTGTTCACTCGAGTC < 41bp 1 0.234433600119602 1 0.174230873584747 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336306 nonsynonymous SNV 0.218 4 24 hm5C_associated_SNPs_45049 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921795 1 0.99953671215641 hm5C_site_43874 DeepMRMD:1;iRNA_m5C:0.99953671215641 43875 chr1 22336306 22336306 1 + A C UCEC 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCATCTGGAAGCCCCCGGTGTTCACTCGAGTCT < 41bp 1 0.391946142299608 1 0.290760159492493 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336306 nonsynonymous SNV 0.218 4 23 hm5C_associated_SNPs_45050 0 0 0 0 1 Endoplasmic reticulum 1 0.50021782373291 1 0.99956435253418 hm5C_site_43875 DeepMRMD:1;iRNA_m5C:0.99956435253418 43876 chr1 22336306 22336306 1 + A C UCEC 22336305 + 22336285 22336325 41 TGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTC TGCAACTTCATCTGGAAGCCCCCGGTGTTCACTCGAGTCTC < 41bp 1 0.546105494249111 1 0.149598389863968 experiment 0.907789011501777 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336305 chr1:22336306 nonsynonymous SNV 0.218 4 22 hm5C_associated_SNPs_45051 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644175184 1 0.999536711649632 hm5C_site_43876 DeepMRMD:1;iRNA_m5C:0.999536711649632 43877 chr1 22336306 22336306 1 + A C UCEC 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCCCCGGTGTTCACTCGAGTCTCCG < 41bp 1 0.412199580916486 1 0.250084638595581 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336306 nonsynonymous SNV 0.218 4 20 hm5C_associated_SNPs_45052 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643926764 1 0.999536712146473 hm5C_site_43877 DeepMRMD:1;iRNA_m5C:0.999536712146473 43878 chr1 22336306 22336306 1 + A C UCEC 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCCCCGGTGTTCACTCGAGTCTCCGCCTTCAT < 41bp 1 0.401030524066871 1 0.0164901316165924 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336306 nonsynonymous SNV 0.218 4 13 hm5C_associated_SNPs_45053 0 0 0 0 1 Endoplasmic reticulum 1 0.500231629259424 1 0.999536741481152 hm5C_site_43878 DeepMRMD:1;iRNA_m5C:0.999536741481152 43879 chr1 22336306 22336306 1 + A C UCEC 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCCCGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT < 41bp 1 0.626042679436967 1 0.21685990691185 experiment 0.747914641126065 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336306 nonsynonymous SNV 0.218 4 4 hm5C_associated_SNPs_45055 0 0 0 0 1 Endoplasmic reticulum 1 0.500231594153531 1 0.999536811692938 hm5C_site_43879 DeepMRMD:1;iRNA_m5C:0.999536811692938 43880 chr1 22336306 22336306 1 + A C UCEC 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA CCGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA < 41bp 1 0.395890144528851 1 0.0392768681049347 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336306 nonsynonymous SNV 0.218 4 1 hm5C_associated_SNPs_45056 0 0 0 0 1 Endoplasmic reticulum 1 0.5002316439157 1 0.9995367121686 hm5C_site_43880 DeepMRMD:1;iRNA_m5C:0.9995367121686 43881 chr3 142422826 142422826 1 + A G UCEC 142422814 + 142422794 142422834 41 GAAGGGAATTCAACACTTACCCTGGCATTGGTATGGCAGCT GAAGGGAATTCAACACTTACCCTGGCATTGGTGTGGCAGCT < 41bp 1 0.328756534673334 1 0.224831104278564 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLS1 ENSG00000120756 CDS Human protein_coding chr3:142422814 chr3:142422826 synonymous SNV . 0 33 hm5C_associated_SNPs_45057 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43881 DeepMRMD:1;iRNA_m5C:0.999536712157815 43882 chr10 129231595 129231595 1 + C T UCEC 129231605 + 129231585 129231625 41 GTCCATGGTGCGGTCCTTCACGATGCCTTCCTCATCCCGCC GTCCATGGTGTGGTCCTTCACGATGCCTTCCTCATCCCGCC < 41bp 1 0.588145752744153 1 0.792246103286743 experiment 0.823708494511694 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129231605 chr10:129231595 nonsynonymous SNV 0.967 4 11 hm5C_associated_SNPs_45058 0 0 0 0 2 Nucleus 1 0.500231643921174 0.415507793426514 0.999536712157651 hm5C_site_43882 DeepMRMD:0.415507793426514;iRNA_m5C:0.999536712157651 43883 chr6 31593349 31593349 1 + A C UCEC 31593332 + 31593312 31593352 41 GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCACCC GTCATGATCCCCGGGGTGGGCTACAGCCTTCAGGCCCCCCC < 41bp 1 0.676402899135295 1 0.536171674728394 experiment 0.647194201729411 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593332 chr6:31593349 synonymous SNV . 0 38 hm5C_associated_SNPs_45059 0 0 1 0 1 Ribosome 1 0.500231643921093 0.927656650543212 0.999536712157815 hm5C_site_43883 DeepMRMD:0.927656650543212;iRNA_m5C:0.999536712157815 43884 chr6 31593349 31593349 1 + A C UCEC 31593346 + 31593326 31593366 41 GGTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTA GGTGGGCTACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTA < 41bp 1 0.263975483022393 1 0.0766705572605133 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593346 chr6:31593349 synonymous SNV . 0 24 hm5C_associated_SNPs_45060 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43884 DeepMRMD:1;iRNA_m5C:0.999536712157815 43885 chr6 31593349 31593349 1 + A C UCEC 31593347 + 31593327 31593367 41 GTGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTAC GTGGGCTACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTAC < 41bp 1 0.18196160774888 1 0.128718197345734 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593347 chr6:31593349 synonymous SNV . 0 23 hm5C_associated_SNPs_45061 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43885 DeepMRMD:1;iRNA_m5C:0.999536712157815 43886 chr6 31593349 31593349 1 + A C UCEC 31593348 + 31593328 31593368 41 TGGGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACC TGGGCTACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTACC < 41bp 1 0.170737012654117 1 0.0451984405517578 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593348 chr6:31593349 synonymous SNV . 0 22 hm5C_associated_SNPs_45062 0 0 1 0 1 Ribosome 1 0.500231643917249 1 0.999536712165501 hm5C_site_43886 DeepMRMD:1;iRNA_m5C:0.999536712165501 43887 chr6 31593349 31593349 1 + A C UCEC 31593350 + 31593330 31593370 41 GGCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGC GGCTACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTACCGC < 41bp 1 0.554020791819314 1 0.310758143663406 experiment 0.891958416361371 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593350 chr6:31593349 synonymous SNV . 0 20 hm5C_associated_SNPs_45063 0 0 1 0 1 Ribosome 1 0.500231643903246 1 0.999536712193509 hm5C_site_43887 DeepMRMD:1;iRNA_m5C:0.999536712193509 Schizophrenia 43888 chr6 31593349 31593349 1 + A C UCEC 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTACCGCG < 41bp 1 0.374554868327644 1 0.142367631196976 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593349 synonymous SNV . 0 19 hm5C_associated_SNPs_45064 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43888 DeepMRMD:1;iRNA_m5C:0.999536712157815 43889 chr6 31593349 31593349 1 + A C UCEC 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTACCGCGG < 41bp 1 0.306788969077549 1 0.172214388847351 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593349 synonymous SNV . 0 18 hm5C_associated_SNPs_45065 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_43889 DeepMRMD:1;iRNA_m5C:0.999536712157816 43890 chr6 31593349 31593349 1 + A C UCEC 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCCCCCCAGTTCCCTCCCTACCGCGGA < 41bp 1 0.289415212837811 1 0.400724470615387 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593349 synonymous SNV . 0 17 hm5C_associated_SNPs_45066 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43890 DeepMRMD:1;iRNA_m5C:0.999536712157815 43891 chr8 56699505 56699505 1 + G A UCEC 56699490 + 56699470 56699510 41 CCTGTACAAGTCATGATGGTCATCAACAGCTAAGTGAAGTT CCTGTACAAGTCATGATGGTCATCAACAGCTAAGTAAAGTT < 41bp 1 0.461165580418866 1 0.155355840921402 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TGS1 ENSG00000137574 CDS Human protein_coding chr8:56699490 chr8:56699505 nonsynonymous SNV 0.011 0 36 hm5C_associated_SNPs_45067 0 0 1 0 0 Nucleus 1 0.500256951034569 1 0.999486097930862 hm5C_site_43891 DeepMRMD:1;iRNA_m5C:0.999486097930862 43892 chr3 39453847 39453847 1 + T C UCEC 39453861 + 39453841 39453881 41 AACCACTGACTGGTCTTAAGCTGTTCTTGCATAGGCTCTTA AACCACCGACTGGTCTTAAGCTGTTCTTGCATAGGCTCTTA < 41bp 1 0.551380927914952 1 0.0938301980495453 experiment 0.897238144170095 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control RPSA ENSG00000168028 CDS Human protein_coding chr3:39453861 chr3:39453847 synonymous SNV . 0 7 hm5C_associated_SNPs_45068 0 0 0 1 1 Cytosol 1 0.500236796524876 1 0.999526406950249 hm5C_site_43892 DeepMRMD:1;iRNA_m5C:0.999526406950249 Exploratory eye movement dysfunction in schizophrenia (cognitive search score) 43893 chrX 70517254 70517254 1 + G A UCEC 70517240 + 70517220 70517260 41 TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGAT TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCAGAGGAT < 41bp 1 0.144577879370992 1 0.30708035826683 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517240 chrX:70517254 nonsynonymous SNV 0.999 1 35 hm5C_associated_SNPs_45069 0 0 1 0 2 Nucleus 1 0.500231643918859 1 0.999536712162282 hm5C_site_43893 DeepMRMD:1;iRNA_m5C:0.999536712162282 43894 chrX 70517254 70517254 1 + G A UCEC 70517241 + 70517221 70517261 41 TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGATG TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCAGAGGATG < 41bp 1 0.685994936482136 1 0.367157727479935 experiment 0.628010127035728 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517241 chrX:70517254 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_45070 0 0 1 0 2 Nucleus 1 0.500231643949269 1 0.999536712101462 hm5C_site_43894 DeepMRMD:1;iRNA_m5C:0.999536712101462 43895 chrX 70517254 70517254 1 + G A UCEC 70517253 + 70517233 70517273 41 TGAGGCGCCAAGAAGAACTTCGGAGGATGGAAGAGCTGCAC TGAGGCGCCAAGAAGAACTTCAGAGGATGGAAGAGCTGCAC < 41bp 1 0.609475789595221 1 0.692869544029236 experiment 0.781048420809558 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517253 chrX:70517254 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_45071 0 0 1 0 2 Nucleus 1 0.500231764467995 0.614260911941528 0.99953647106401 hm5C_site_43895 DeepMRMD:0.614260911941528;iRNA_m5C:0.99953647106401 43896 chr4 6862960 6862960 1 + G A UCEC 6862975 + 6862955 6862995 41 GATTCGCCCTCGCTCGTGGTCTTCTGGCTCCAGTGAAGCAG GATTCACCCTCGCTCGTGGTCTTCTGGCTCCAGTGAAGCAG < 41bp 1 0.331579668540734 1 0.0880438387393951 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KIAA0232 ENSG00000170871 CDS Human protein_coding chr4:6862975 chr4:6862960 nonsynonymous SNV 0.999 3 6 hm5C_associated_SNPs_45072 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43896 DeepMRMD:1;iRNA_m5C:0.999536712157815 43897 chr8 99102051 99102051 1 + A C UCEC 99102068 + 99102048 99102088 41 CAGAAGTATTGGACAGAAGTCAGCTTGTGGAAAAGCCTGTT CAGCAGTATTGGACAGAAGTCAGCTTGTGGAAAAGCCTGTT < 41bp 1 0.497918238700982 1 0.340642124414444 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ERICH5 ENSG00000177459 CDS Human protein_coding chr8:99102068 chr8:99102051 nonsynonymous SNV 0.003 1 4 hm5C_associated_SNPs_45074 0 0 0 0 0 exosome 1 0.50023164391772 1 0.99953671216456 hm5C_site_43897 DeepMRMD:1;iRNA_m5C:0.99953671216456 43898 chr2 136511733 136511733 1 + T C UCEC 136511732 + 136511712 136511752 41 TTCATTAAACTGTACAGATCCTGTAGTGTGTGTTCCATCCA TTCATTAAACTGTACAGATCCCGTAGTGTGTGTTCCATCCA < 41bp 1 0.368891757423427 1 0.0867962837219238 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136511732 chr2:136511733 synonymous SNV . 0 22 hm5C_associated_SNPs_45075 0 0 1 0 1 Endoplasmic reticulum 1 0.500257887064617 1 0.999484225870766 hm5C_site_43898 DeepMRMD:1;iRNA_m5C:0.999484225870766 43899 chrX 41025267 41025267 1 + G A UCEC 41025277 + 41025257 41025297 41 GGATGAACCAGACTTAGATCCTGATATTAATAAGGACTTCT GGATGAACCAAACTTAGATCCTGATATTAATAAGGACTTCT < 41bp 1 0.0976730033707259 1 0.0627878308296204 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41025277 chrX:41025267 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_45076 0 0 1 0 0 Nucleus 1 0.500431207386699 1 0.999137585226602 hm5C_site_43899 DeepMRMD:1;iRNA_m5C:0.999137585226602 43900 chr9 96427989 96427989 1 + G A UCEC 96427976 + 96427956 96427996 41 CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCGACGAGCC CTTCTGCCCTAGCTCCAAGGCTCTCAGGCCCCCAACGAGCC < 41bp 1 0.126561599474381 1 0.083881676197052 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96427976 chr9:96427989 synonymous SNV . 0 34 hm5C_associated_SNPs_45078 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43900 DeepMRMD:1;iRNA_m5C:0.999536712157815 43901 chr21 37785211 37785211 1 + C A UCEC 37785214 + 37785194 37785234 41 TGCCTTCCTGGCCATTTCTTCCACGGACGGTTACTGCTCAT TGCCTTCCTGGCCATTTATTCCACGGACGGTTACTGCTCAT < 41bp 1 0.458038788708057 1 0.292892843484879 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37785214 chr21:37785211 nonsynonymous SNV 1.000 4 18 hm5C_associated_SNPs_45079 0 0 1 0 1 Ribosome 1 0.500231643918938 1 0.999536712162124 hm5C_site_43901 DeepMRMD:1;iRNA_m5C:0.999536712162124 43902 chr20 1144997 1144997 1 + G A UCEC 1145015 + 1144995 1145035 41 GAGATCTGGCTTCCCAAGAGCACTTATTGACCCTTCCTCAG GAAATCTGGCTTCCCAAGAGCACTTATTGACCCTTCCTCAG < 41bp 1 0.332510320733439 1 0.0189460813999176 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1145015 chr20:1144997 nonsynonymous SNV 1.000 3 3 hm5C_associated_SNPs_45080 0 0 1 0 1 Ribosome 1 0.500231643674481 1 0.999536712651038 hm5C_site_43902 DeepMRMD:1;iRNA_m5C:0.999536712651038 43903 chr16 57113038 57113038 1 + G T UCEC 57113028 + 57113008 57113048 41 CAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATCAGGTA CAGGCCCTGGATGGATCCCCCCATTTGGAATAGATCAGGTA < 41bp 1 0.0597881649063632 1 0.0521866977214813 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57113028 chr16:57113038 stopgain 0.971 0 31 hm5C_associated_SNPs_45081 0 0 0 0 2 Ribosome 1 0.500231643921559 1 0.999536712156883 hm5C_site_43903 DeepMRMD:1;iRNA_m5C:0.999536712156883 43904 chr4 123145707 123145707 1 + C T UCEC 123145724 + 123145704 123145744 41 GGTCTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG GGTTTCCAGCTGAGAGCACACGCTATGTTCTCAGCAGAAGG < 41bp 1 0.422489790425469 1 0.212111860513687 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KIAA1109 ENSG00000138688 CDS Human protein_coding chr4:123145724 chr4:123145707 nonsynonymous SNV 1.000 2 4 hm5C_associated_SNPs_45082 0 0 1 0 2 Nucleus 1 0.500231974741618 1 0.999536050516765 hm5C_site_43904 DeepMRMD:1;iRNA_m5C:0.999536050516765 43905 chr15 65157334 65157334 1 + C A UCEC 65157338 + 65157318 65157358 41 CAGCAAGCTCTGAGGTCTCCCCTGAGAGCCAAGAGGACTCA CAGCAAGCTCTGAGGTATCCCCTGAGAGCCAAGAGGACTCA < 41bp 1 0.472673235331945 1 0.171863168478012 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLEKHO2 ENSG00000241839 CDS Human protein_coding chr15:65157338 chr15:65157334 synonymous SNV . 0 17 hm5C_associated_SNPs_45083 0 0 0 0 0 chromatin 1 0.500231643844102 1 0.999536712311797 hm5C_site_43905 DeepMRMD:1;iRNA_m5C:0.999536712311797 43906 chrX 123229241 123229241 1 + G A UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAACAGACAAGAGAGAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.405748877180851 1 0.423438400030136 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229241 nonsynonymous SNV 0.998 3 12 hm5C_associated_SNPs_45084 0 0 1 0 2 Nucleus 1 0.500231643921096 1 0.999536712157808 hm5C_site_43906 DeepMRMD:1;iRNA_m5C:0.999536712157808 43907 chr22 47290704 47290704 1 + A C UCEC 47290696 + 47290676 47290716 41 CCAGATCCACATAGACATCCCTCGCATGAGCCCTGAAGCGT CCAGATCCACATAGACATCCCTCGCATGCGCCCTGAAGCGT < 41bp 1 0.292345912194838 1 0.0834000110626221 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBC1D22A ENSG00000054611 CDS Human protein_coding chr22:47290696 chr22:47290704 nonsynonymous SNV 0.978 3 29 hm5C_associated_SNPs_45085 0 0 1 0 2 Cytosol 1 0.500233584896316 1 0.999532830207368 hm5C_site_43907 DeepMRMD:1;iRNA_m5C:0.999532830207368 43908 chr1 200730050 200730050 1 + C A UCEC 200730036 + 200730016 200730056 41 CCAGGAACACATCAAACCACCTGTTGTTAATTTGCTTCTAT CCAGGAACACATCAAACCACCTGTTGTTAATTTGATTCTAT < 41bp 1 0.162278872189752 1 0.0546545386314392 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200730036 chr1:200730050 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_45086 0 0 1 0 1 chromatin 1 0.500231644004564 1 0.999536711990873 hm5C_site_43908 DeepMRMD:1;iRNA_m5C:0.999536711990873 43909 chr11 61632663 61632663 1 + C T UCEC 61632668 + 61632648 61632688 41 CAACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTG CAACTTACACAAGATTGCCCCGCTGGTGAAGTCTCTATGTG < 41bp 1 0.370394160201705 1 0.147710055112839 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632668 chr11:61632663 synonymous SNV . 0 16 hm5C_associated_SNPs_45087 0 0 1 0 2 Ribosome 1 0.500231640449975 1 0.999536719100049 hm5C_site_43909 DeepMRMD:1;iRNA_m5C:0.999536719100049 43910 chr11 61632663 61632663 1 + C T UCEC 61632670 + 61632650 61632690 41 ACTTACACAAGATCGCCCCGCTGGTGAAGTCTCTATGTGCC ACTTACACAAGATTGCCCCGCTGGTGAAGTCTCTATGTGCC < 41bp 1 0.530307877028594 1 0.353135406970978 experiment 0.939384245942811 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FADS2 ENSG00000134824 CDS Human protein_coding chr11:61632670 chr11:61632663 synonymous SNV . 0 14 hm5C_associated_SNPs_45088 0 0 1 0 2 Ribosome 1 0.500231666285457 1 0.999536667429086 hm5C_site_43910 DeepMRMD:1;iRNA_m5C:0.999536667429086 43911 chr1 249212026 249212026 1 + G A UCEC 249212016 + 249211996 249212036 41 AGTGAGGAGATCATCGTGTGCCGCTGGCACGATAGCAGCGT AGTGAGGAGATCATCGTGTGCCGCTGGCACAATAGCAGCGT < 41bp 1 0.451692017420292 1 0.124156624078751 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212016 chr1:249212026 nonsynonymous SNV 0.506 2 31 hm5C_associated_SNPs_45089 0 0 0 0 0 Cytosol 1 0.500231501912442 1 0.999536996175117 hm5C_site_43911 DeepMRMD:1;iRNA_m5C:0.999536996175117 43912 chr4 166254697 166254697 1 + G T UCEC 166254694 + 166254674 166254714 41 CATGGGGATCCCTTATAGTTCATGAAGCCCTTTATTTCTTA CATGGGGATCCCTTATAGTTCATTAAGCCCTTTATTTCTTA < 41bp 1 0.264232690810834 1 0.0160024166107178 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166254694 chr4:166254697 stopgain 0.948 1 24 hm5C_associated_SNPs_45090 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43912 DeepMRMD:1;iRNA_m5C:0.999536712157815 43913 chr1 145115796 145115796 1 + G T UCEC 145115809 + 145115789 145115829 41 ATGCGAAGTACTTGAACATGCATTCCACTTATGCCAAACTT ATGCGAATTACTTGAACATGCATTCCACTTATGCCAAACTT < 41bp 1 0.0417880528356591 1 0.0492966175079346 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SEC22B ENSG00000223380 ncRNA_exonic Human other chr1:145115809 chr1:145115796 . . 0 8 hm5C_associated_SNPs_45091 0 0 1 0 1 Cytosol 1 0.500230877345917 1 0.999538245308167 hm5C_site_43913 DeepMRMD:1;iRNA_m5C:0.999538245308167 43914 chr12 101711341 101711341 1 + G A UCEC 101711330 + 101711310 101711350 41 AAAAGGCAAAGGGATGGTGGCAGAGGAAATCGAAGAGGAAC AAAAGGCAAAGGGATGGTGGCAGAGGAAATCAAAGAGGAAC < 41bp 1 0.38010035792482 1 0.531568288803101 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711330 chr12:101711341 nonsynonymous SNV 0.017 1 32 hm5C_associated_SNPs_45092 0 0 1 0 1 Cytosol 1 0.500231643921092 0.936863422393798 0.999536712157815 hm5C_site_43914 DeepMRMD:0.936863422393798;iRNA_m5C:0.999536712157815 43915 chr12 101711341 101711341 1 + G A UCEC 101711340 + 101711320 101711360 41 GGGATGGTGGCAGAGGAAATCGAAGAGGAACCTGCCGCAGG GGGATGGTGGCAGAGGAAATCAAAGAGGAACCTGCCGCAGG < 41bp 1 0.666944755213569 1 0.871371984481812 experiment 0.666110489572862 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711340 chr12:101711341 nonsynonymous SNV 0.017 1 22 hm5C_associated_SNPs_45093 0 0 1 0 1 Cytosol 1 0.500231642936809 0.257256031036376 0.999536714126382 hm5C_site_43915 DeepMRMD:0.257256031036376;iRNA_m5C:0.999536714126382 43916 chr12 101711341 101711341 1 + G A UCEC 101711351 + 101711331 101711371 41 AGAGGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAG AGAGGAAATCAAAGAGGAACCTGCCGCAGGAGATGATGAAG < 41bp 1 0.334818380583487 1 0.539670288562775 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711351 chr12:101711341 nonsynonymous SNV 0.017 1 11 hm5C_associated_SNPs_45094 0 0 1 0 1 Cytosol 1 0.500231643921085 0.92065942287445 0.999536712157829 hm5C_site_43916 DeepMRMD:0.92065942287445;iRNA_m5C:0.999536712157829 43917 chr12 101711341 101711341 1 + G A UCEC 101711354 + 101711334 101711374 41 GGAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGT GGAAATCAAAGAGGAACCTGCCGCAGGAGATGATGAAGAGT < 41bp 1 0.270881894186231 1 0.43636691570282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711354 chr12:101711341 nonsynonymous SNV 0.017 1 8 hm5C_associated_SNPs_45095 0 0 1 0 1 Cytosol 1 0.500231643903648 1 0.999536712192704 hm5C_site_43917 DeepMRMD:1;iRNA_m5C:0.999536712192704 43918 chr12 101711341 101711341 1 + G A UCEC 101711355 + 101711335 101711375 41 GAAATCGAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTT GAAATCAAAGAGGAACCTGCCGCAGGAGATGATGAAGAGTT < 41bp 1 0.431374807344548 1 0.626878619194031 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control UTP20 ENSG00000120800 CDS Human protein_coding chr12:101711355 chr12:101711341 nonsynonymous SNV 0.017 1 7 hm5C_associated_SNPs_45096 0 0 1 0 1 Cytosol 1 0.500231643883088 0.746242761611938 0.999536712233823 hm5C_site_43918 DeepMRMD:0.746242761611938;iRNA_m5C:0.999536712233823 43919 chr9 35733119 35733119 1 + G T UCEC 35733112 + 35733092 35733132 41 CATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTAT CATGACCACACCTACTCCCTCCCACGGTAAACTGTCTCTAT < 41bp 1 0.110849678339061 1 0.0433460175991058 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733112 chr9:35733119 stopgain 0.017 0 28 hm5C_associated_SNPs_45098 0 0 1 0 1 Endoplasmic reticulum 1 0.500231616156206 1 0.999536767687588 hm5C_site_43919 DeepMRMD:1;iRNA_m5C:0.999536767687588 43920 chr9 35733119 35733119 1 + G T UCEC 35733113 + 35733093 35733133 41 ATGACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATG ATGACCACACCTACTCCCTCCCACGGTAAACTGTCTCTATG < 41bp 1 0.167956723160918 1 0.102048993110657 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733113 chr9:35733119 stopgain 0.017 0 27 hm5C_associated_SNPs_45099 0 0 1 0 1 Endoplasmic reticulum 1 0.500231644231744 1 0.999536711536513 hm5C_site_43920 DeepMRMD:1;iRNA_m5C:0.999536711536513 43921 chr10 17277195 17277195 1 + G T UCEC 17277176 + 17277156 17277196 41 CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTGA CACCCCCTGCAGAATGAGTCCCTGGAACGCCAGATGCGTTA < 41bp 1 0.14534016135476 1 0.108674198389053 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277176 chr10:17277195 stopgain 1.000 1 40 hm5C_associated_SNPs_45101 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_43921 DeepMRMD:1;iRNA_m5C:0.999536712157812 43922 chr10 17277195 17277195 1 + G T UCEC 17277185 + 17277165 17277205 41 CAGAATGAGTCCCTGGAACGCCAGATGCGTGAAATGGAAGA CAGAATGAGTCCCTGGAACGCCAGATGCGTTAAATGGAAGA < 41bp 1 0.382108708994862 1 0.69793301820755 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277185 chr10:17277195 stopgain 1.000 1 31 hm5C_associated_SNPs_45102 0 0 1 0 1 Ribosome 1 0.500231628872457 0.6041339635849 0.999536742255087 hm5C_site_43922 DeepMRMD:0.6041339635849;iRNA_m5C:0.999536742255087 43923 chr10 17277195 17277195 1 + G T UCEC 17277192 + 17277172 17277212 41 AGTCCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTT AGTCCCTGGAACGCCAGATGCGTTAAATGGAAGAGAACTTT < 41bp 1 0.247215018222107 1 0.208135426044464 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17277192 chr10:17277195 stopgain 1.000 1 24 hm5C_associated_SNPs_45103 0 0 1 0 1 Ribosome 1 0.50023166465089 1 0.999536670698219 hm5C_site_43923 DeepMRMD:1;iRNA_m5C:0.999536670698219 43924 chr6 34212861 34212861 1 + T C UCEC 34212877 + 34212857 34212897 41 TGAGTGGGGAGCAGTTTTCCCCTGGCCTCAGTTCCCAGCTC TGAGCGGGGAGCAGTTTTCCCCTGGCCTCAGTTCCCAGCTC < 41bp 1 0.691970977223095 1 0.708561599254608 experiment 0.616058045553811 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control HMGA1 ENSG00000137309 CDS Human protein_coding chr6:34212877 chr6:34212861 synonymous SNV . 0 5 hm5C_associated_SNPs_45104 0 0 1 0 0 Cytosol 1 0.500231643921237 0.582876801490784 0.999536712157525 hm5C_site_43924 DeepMRMD:0.582876801490784;iRNA_m5C:0.999536712157525 43925 chr7 36464165 36464165 1 + C T UCEC 36464155 + 36464135 36464175 41 TAATGCTTTATTTTTCCAGGCAAGATGTATCCAATGACTTT TAATGCTTTATTTTTCCAGGCAAGATGTATTCAATGACTTT < 41bp 1 0.321418878865719 1 0.324450790882111 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36464155 chr7:36464165 nonsynonymous SNV 0.997 3 31 hm5C_associated_SNPs_45106 0 0 1 0 2 Nucleus 1 0.500231643921085 1 0.99953671215783 hm5C_site_43925 DeepMRMD:1;iRNA_m5C:0.99953671215783 43926 chrX 149826334 149826334 1 + C A UCEC 149826326 + 149826306 149826346 41 GGAGCCATTCAAGTAGCAGACAAAGTTTCTTCAGGGAAGAG GGAGCCATTCAAGTAGCAGACAAAGTTTATTCAGGGAAGAG < 41bp 1 0.535137736563588 1 0.320601046085358 experiment 0.929724526872823 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTM1 ENSG00000171100 CDS Human protein_coding chrX:149826326 chrX:149826334 nonsynonymous SNV 0.992 3 29 hm5C_associated_SNPs_45107 0 0 0 0 1 Ribosome 1 0.500231643979846 1 0.999536712040308 hm5C_site_43926 DeepMRMD:1;iRNA_m5C:0.999536712040308 43927 chr9 100773653 100773653 1 + C T UCEC 100773650 + 100773630 100773670 41 GATGTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGA GATGTAGAAGGGGATGAGGACGATGATGAAGTCAGTGAGGA < 41bp 1 0.494322722106293 1 0.470453381538391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773650 chr9:100773653 synonymous SNV . 0 24 hm5C_associated_SNPs_45108 0 0 1 0 1 Cytosol 1 0.500231704582713 1 0.999536590834574 hm5C_site_43927 DeepMRMD:1;iRNA_m5C:0.999536590834574 43928 chr9 100773653 100773653 1 + C T UCEC 100773662 + 100773642 100773682 41 GATGAGGACGACGATGAAGTCAGTGAGGAGGTCAGTGCAGC GATGAGGACGATGATGAAGTCAGTGAGGAGGTCAGTGCAGC < 41bp 1 0.629578325719154 1 0.41373798251152 experiment 0.740843348561692 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773662 chr9:100773653 synonymous SNV . 0 12 hm5C_associated_SNPs_45109 0 0 1 0 1 Cytosol 1 0.500231902674873 1 0.999536194650254 hm5C_site_43928 DeepMRMD:1;iRNA_m5C:0.999536194650254 43929 chr8 143783079 143783079 1 + G A UCEC 143783082 + 143783062 143783102 41 AACACTTTCGAGTGCCAGAACCCAAGGAGGTGCAAATGGAC AACACTTTCGAGTGCCAAAACCCAAGGAGGTGCAAATGGAC < 41bp 1 0.50561520172399 1 0.366663098335266 experiment 0.98876959655202 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LY6K ENSG00000160886 CDS Human protein_coding chr8:143783082 chr8:143783079 synonymous SNV . 0 18 hm5C_associated_SNPs_45110 0 0 0 0 2 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43929 DeepMRMD:1;iRNA_m5C:0.999536712157815 43930 chrX 150156314 150156314 1 + G A UCEC 150156311 + 150156291 150156331 41 AAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGG AAAGGGTCCTGCTAAAGTTGCCCAGAAAAAGGTGGAAGAGG < 41bp 1 0.260235474288555 1 0.114947736263275 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156311 chrX:150156314 nonsynonymous SNV 0.969 1 24 hm5C_associated_SNPs_45111 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43930 DeepMRMD:1;iRNA_m5C:0.999536712157815 43931 chrX 150156314 150156314 1 + G A UCEC 150156312 + 150156292 150156332 41 AAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGA AAGGGTCCTGCTAAAGTTGCCCAGAAAAAGGTGGAAGAGGA < 41bp 1 0.532231260596023 1 0.424913257360458 experiment 0.935537478807954 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156312 chrX:150156314 nonsynonymous SNV 0.969 1 23 hm5C_associated_SNPs_45112 0 0 1 0 1 Ribosome 1 0.500231647752759 1 0.999536704494483 hm5C_site_43931 DeepMRMD:1;iRNA_m5C:0.999536704494483 43932 chrX 150156314 150156314 1 + G A UCEC 150156313 + 150156293 150156333 41 AGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAA AGGGTCCTGCTAAAGTTGCCCAGAAAAAGGTGGAAGAGGAA < 41bp 1 0.633665540186171 1 0.561741173267365 experiment 0.732668919627658 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156313 chrX:150156314 nonsynonymous SNV 0.969 1 22 hm5C_associated_SNPs_45113 0 0 1 0 1 Ribosome 1 0.500231643921092 0.87651765346527 0.999536712157815 hm5C_site_43932 DeepMRMD:0.87651765346527;iRNA_m5C:0.999536712157815 43933 chrX 152959698 152959698 1 + C A UCEC 152959718 + 152959698 152959738 41 CATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG AATCGATCTCTCCATGGTGACTGATGTGAGTGGGGTGGGGG < 41bp 1 0.338382523163474 1 0.118282735347748 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959718 chrX:152959698 synonymous SNV . 0 1 hm5C_associated_SNPs_45115 0 0 1 4 1 Ribosome 1 0.500231598436501 1 0.999536803126999 hm5C_site_43933 DeepMRMD:1;iRNA_m5C:0.999536803126999 43934 chr17 57287553 57287553 1 + C A UCEC 57287568 + 57287548 57287588 41 GAGATCTGCGTTGTGGGAATCTTCGGCAAGACGGCTCTACG GAGATATGCGTTGTGGGAATCTTCGGCAAGACGGCTCTACG < 41bp 1 0.518029152137763 1 0.659614861011505 experiment 0.963941695724474 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMG8 ENSG00000167447 CDS Human protein_coding chr17:57287568 chr17:57287553 synonymous SNV . 0 6 hm5C_associated_SNPs_45116 0 0 1 0 0 chromatin 1 0.500231643921093 0.68077027797699 0.999536712157815 hm5C_site_43934 DeepMRMD:0.68077027797699;iRNA_m5C:0.999536712157815 43935 chr22 26242235 26242235 1 + G T UCEC 26242222 + 26242202 26242242 41 TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCAGATCAAGC TGCCGCGGTGAGGAGGAAAGCCCCGTGCTCCCATATCAAGC < 41bp 1 0.3258799312922 1 0.253150582313538 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26242222 chr22:26242235 nonsynonymous SNV 0.991 4 34 hm5C_associated_SNPs_45117 0 0 0 0 1 chromatin 1 0.500231643907324 1 0.999536712185352 hm5C_site_43935 DeepMRMD:1;iRNA_m5C:0.999536712185352 43936 chr10 128768989 128768989 1 + G T UCEC 128768993 + 128768973 128769013 41 TAACTATGATGCCAGAGGAGCGGATGAACTTTCTTTACAGA TAACTATGATGCCAGATGAGCGGATGAACTTTCTTTACAGA < 41bp 1 0.0943466670659946 1 0.43416365981102 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOCK1 ENSG00000150760 CDS Human protein_coding chr10:128768993 chr10:128768989 stopgain 0.984 1 17 hm5C_associated_SNPs_45118 0 0 1 0 2 Nucleus 1 0.500232385270145 1 0.999535229459711 hm5C_site_43936 DeepMRMD:1;iRNA_m5C:0.999535229459711 43937 chr1 151020407 151020407 1 + G T UCEC 151020391 + 151020371 151020411 41 GGGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTC GGGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCATACTC < 41bp 1 0.62293919294716 1 0.469291627407074 experiment 0.75412161410568 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020391 chr1:151020407 nonsynonymous SNV 0.001 0 37 hm5C_associated_SNPs_45119 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_43937 DeepMRMD:1;iRNA_m5C:0.999536712157815 43938 chr1 151020407 151020407 1 + G T UCEC 151020392 + 151020372 151020412 41 GGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTCC GGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCATACTCC < 41bp 1 0.494844378519914 1 0.675429940223694 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020392 chr1:151020407 nonsynonymous SNV 0.001 0 36 hm5C_associated_SNPs_45120 0 0 1 0 0 Cytosol 1 0.500231643921092 0.649140119552612 0.999536712157815 hm5C_site_43938 DeepMRMD:0.649140119552612;iRNA_m5C:0.999536712157815 43939 chr3 122288490 122288490 1 + G T UCEC 122288506 + 122288486 122288526 41 GAAAGAAATTGAAAGAGGGTCATGAAACACCGATGGACATT GAAATAAATTGAAAGAGGGTCATGAAACACCGATGGACATT < 41bp 1 0.402286186786156 1 0.132454305887222 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DTX3L ENSG00000163840 CDS Human protein_coding chr3:122288506 chr3:122288490 nonsynonymous SNV 0.279 1 5 hm5C_associated_SNPs_45121 0 0 0 0 0 Nucleus 1 0.500226286608012 1 0.999547426783976 hm5C_site_43939 DeepMRMD:1;iRNA_m5C:0.999547426783976 43940 chrX 107834435 107834435 1 + G A UCEC 107834422 + 107834402 107834442 41 AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGGCCCTGCT AGCCTGGGGCTCCTGGGCTTCCAGGGCCTCCTGACCCTGCT < 41bp 1 0.601008755669592 1 0.898171782493591 experiment 0.797982488660815 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107834422 chrX:107834435 nonsynonymous SNV 0.976 4 34 hm5C_associated_SNPs_45122 0 0 1 0 1 Ribosome 1 0.500231643921092 0.203656435012818 0.999536712157815 hm5C_site_43940 DeepMRMD:0.203656435012818;iRNA_m5C:0.999536712157815 43941 chr19 4222732 4222732 1 + C T UCEC 4222718 + 4222698 4222738 41 TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTCGCCACC TTAAGGAAGCCTTGAAGGAGCAGCCGGCCGCCCTTGCCACC < 41bp 1 0.287255370748764 1 0.367413818836212 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4222718 chr19:4222732 synonymous SNV . 0 35 hm5C_associated_SNPs_45123 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43941 DeepMRMD:1;iRNA_m5C:0.999536712157815 43942 chr3 33877683 33877683 1 + G T UCEC 33877665 + 33877645 33877685 41 ATGACTTCATTTATCATGATCGAGTTCCAGACCTTAAAGAT ATGACTTCATTTATCATGATCGAGTTCCAGACCTTAAATAT < 41bp 1 0.442889411472347 1 0.292905628681183 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33877665 chr3:33877683 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_45124 0 0 1 0 1 Nucleus 1 0.500231634822019 1 0.999536730355963 hm5C_site_43942 DeepMRMD:1;iRNA_m5C:0.999536730355963 43943 chr17 38609285 38609285 1 + C T UCEC 38609301 + 38609281 38609321 41 AGCGCCCATGACCGCAGGTGCCTGCAGAAGCACTTCGCCAA AGCGTCCATGACCGCAGGTGCCTGCAGAAGCACTTCGCCAA < 41bp 1 0.106701824762589 1 0.0854181051254272 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38609301 chr17:38609285 nonsynonymous SNV 0.961 0 5 hm5C_associated_SNPs_45125 0 0 1 0 1 Nucleus 1 0.500231599427606 1 0.999536801144788 hm5C_site_43943 DeepMRMD:1;iRNA_m5C:0.999536801144788 43944 chr1 156761569 156761569 1 + C A UCEC 156761563 + 156761543 156761583 41 CAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGC CAGGAAATTGCCCCAGATGCCTCCTTAATCGATGACGAAGC < 41bp 1 0.527102087301178 1 0.208423048257828 experiment 0.945795825397644 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156761563 chr1:156761569 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_45127 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_43944 DeepMRMD:1;iRNA_m5C:0.999536712157815 43945 chr18 48446853 48446853 1 + C T UCEC 48446838 + 48446818 48446858 41 GTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGAAGA GTTTTTAGATATGGCCGGAACACACTCATTCAGTTTGAAGA < 41bp 1 0.21413220524939 1 0.129078924655914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ME2 ENSG00000082212 CDS Human protein_coding chr18:48446838 chr18:48446853 synonymous SNV . 0 36 hm5C_associated_SNPs_45129 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43945 DeepMRMD:1;iRNA_m5C:0.999536712157815 43946 chr2 86360545 86360545 1 + C A UCEC 86360529 + 86360509 86360549 41 AAGCATTGGATGTGGCCAATCGGCTAGAAGTGATTCCTAAA AAGCATTGGATGTGGCCAATCGGCTAGAAGTGATTCATAAA < 41bp 1 0.522396516959228 1 0.699435174465179 experiment 0.955206966081543 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360529 chr2:86360545 nonsynonymous SNV 0.959 4 37 hm5C_associated_SNPs_45130 0 0 1 0 2 Nucleus 1 0.500231643921093 0.601129651069642 0.999536712157815 hm5C_site_43946 DeepMRMD:0.601129651069642;iRNA_m5C:0.999536712157815 43947 chr1 44878336 44878336 1 + C T UCEC 44878350 + 44878330 44878370 41 TGCTGTCTCTGGCCTCATTTCTGATCGGGAAGCCTCATCTA TGCTGTTTCTGGCCTCATTTCTGATCGGGAAGCCTCATCTA < 41bp 1 0.456442324006191 1 0.462544798851013 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF220 ENSG00000187147 CDS Human protein_coding chr1:44878350 chr1:44878336 synonymous SNV . 0 7 hm5C_associated_SNPs_45131 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43947 DeepMRMD:1;iRNA_m5C:0.999536712157815 43948 chr1 162536047 162536047 1 + G T UCEC 162536030 + 162536010 162536050 41 AGGCCATTGAAGGTTTTAACCAGTCTTCTCACCAAAAGAAT AGGCCATTGAAGGTTTTAACCAGTCTTCTCACCAAAATAAT < 41bp 1 0.346168744825191 1 0.243906199932098 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UAP1 ENSG00000117143 CDS Human protein_coding chr1:162536030 chr1:162536047 nonsynonymous SNV 0.992 1 38 hm5C_associated_SNPs_45132 0 0 1 0 1 Ribosome 1 0.500229983887847 1 0.999540032224306 hm5C_site_43948 DeepMRMD:1;iRNA_m5C:0.999540032224306 43949 chrX 73751377 73751377 1 + G A UCEC 73751380 + 73751360 73751400 41 GCTCCCCCAACCCTGAGGAACCAATCTAATGCCTTTCTTGC GCTCCCCCAACCCTGAGAAACCAATCTAATGCCTTTCTTGC < 41bp 1 0.0832240053941461 1 0.106083661317825 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73751380 chrX:73751377 nonsynonymous SNV 0.970 0 18 hm5C_associated_SNPs_45133 0 0 0 0 0 Ribosome 1 0.500231643885483 1 0.999536712229033 hm5C_site_43949 DeepMRMD:1;iRNA_m5C:0.999536712229033 43950 chr11 94533464 94533464 1 + T C UCEC 94533474 + 94533454 94533494 41 ACCCCCTGAGTATGGGGTAACGAGGTGATTATCAACTGCAG ACCCCCTGAGCATGGGGTAACGAGGTGATTATCAACTGCAG < 41bp 1 0.666180019198165 1 0.744880199432373 experiment 0.66763996160367 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94533474 chr11:94533464 nonsynonymous SNV 0.939 3 11 hm5C_associated_SNPs_45134 0 0 1 0 1 chromatin 1 0.500231643496674 0.510239601135254 0.999536713006652 hm5C_site_43950 DeepMRMD:0.510239601135254;iRNA_m5C:0.999536713006652 43951 chr11 17393602 17393602 1 + A C UCEC 17393604 + 17393584 17393624 41 CTCTCAAGTGCATTCTGAAACACTGGAACTCCTTTGACACT CTCTCAAGTGCATTCTGACACACTGGAACTCCTTTGACACT < 41bp 1 0.291377888615493 1 0.0541815757751465 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NCR3LG1 ENSG00000188211 CDS Human protein_coding chr11:17393604 chr11:17393602 nonsynonymous SNV 0.741 1 19 hm5C_associated_SNPs_45135 0 0 1 0 1 Nucleus 1 0.500231803393019 1 0.999536393213963 hm5C_site_43951 DeepMRMD:1;iRNA_m5C:0.999536393213963 43952 chr5 82833362 82833362 1 + A G UCEC 82833367 + 82833347 82833387 41 GAATTTGAAAGTGGAACAGCCAAAAAAGGGGCAGAATCAGT GAATTTGAAAGTGGAGCAGCCAAAAAAGGGGCAGAATCAGT < 41bp 1 0.180876219919207 1 0.281611323356628 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82833367 chr5:82833362 nonsynonymous SNV 0.002 0 16 hm5C_associated_SNPs_45136 0 0 1 0 0 Ribosome 1 0.500231643921387 1 0.999536712157226 hm5C_site_43952 DeepMRMD:1;iRNA_m5C:0.999536712157226 43953 chr9 35389882 35389882 1 + C T UCEC 35389874 + 35389854 35389894 41 ACCTCCAGAGGAACAAGGGCCCAGCATTCGGAACCTGGATT ACCTCCAGAGGAACAAGGGCCCAGCATTTGGAACCTGGATT < 41bp 1 0.0708260395625366 1 0.172866702079773 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UNC13B ENSG00000198722 CDS Human protein_coding chr9:35389874 chr9:35389882 nonsynonymous SNV 1.000 4 29 hm5C_associated_SNPs_45139 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_43953 DeepMRMD:1;iRNA_m5C:0.999536712157815 43954 chr6 21198305 21198305 1 + T G UCEC 21198317 + 21198297 21198337 41 TCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGT TCCAAGTTGTATGTTGCACACAATCAATTCTATGAGCAGGT < 41bp 1 0.0488958664331609 1 0.0654658079147339 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:21198317 chr6:21198305 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_45140 0 0 0 0 2 Nucleus 1 0.500230895902752 1 0.999538208194497 hm5C_site_43954 DeepMRMD:1;iRNA_m5C:0.999538208194497 43955 chr17 28499611 28499611 1 + A C UCEC 28499607 + 28499587 28499627 41 GAAGCTGCTAAGAAGCAGGCCATGAAACAGGTAAGGTAGAA GAAGCTGCTAAGAAGCAGGCCATGCAACAGGTAAGGTAGAA < 41bp 1 0.334381050485421 1 0.0683208405971527 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28499607 chr17:28499611 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_45141 0 0 1 0 2 Cytosol 1 0.500231620474282 1 0.999536759051436 hm5C_site_43955 DeepMRMD:1;iRNA_m5C:0.999536759051436 43956 chr18 641413 641413 1 + C A UCEC 641423 + 641403 641443 41 TGGCCAGATTCTCCAGATGACCCGGAAGCACTTGGAGGACA TGGCCAGATTATCCAGATGACCCGGAAGCACTTGGAGGACA < 41bp 1 0.67212959314716 1 0.0502934455871582 experiment 0.65574081370568 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641423 chr18:641413 nonsynonymous SNV 0.574 1 11 hm5C_associated_SNPs_45142 0 0 0 0 1 cytosol 1 0.500231643921107 1 0.999536712157786 hm5C_site_43956 DeepMRMD:1;iRNA_m5C:0.999536712157786 43957 chr10 104157768 104157768 1 + C A UCEC 104157753 + 104157733 104157773 41 CATAGAATCTCCGGGGGCATCAAACCTGAAGATTTCTCGAA CATAGAATCTCCGGGGGCATCAAACCTGAAGATTTATCGAA < 41bp 1 0.206365211351622 1 0.438122481107712 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104157753 chr10:104157768 nonsynonymous SNV 0.894 4 36 hm5C_associated_SNPs_45143 0 0 1 0 2 chromatin 1 0.500231643977 1 0.999536712045999 hm5C_site_43957 DeepMRMD:1;iRNA_m5C:0.999536712045999 43958 chr19 49611699 49611699 1 + G T UCEC 49611707 + 49611687 49611727 41 CTGCGCCGGAGTGAAGAGGTCGTCCTCTCCATCTGCTGTGT CTGCGCCGGAGTTAAGAGGTCGTCCTCTCCATCTGCTGTGT < 41bp 1 0.137108801151835 1 0.0372253954410553 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49611707 chr19:49611699 stoploss 0.627 0 13 hm5C_associated_SNPs_45144 0 0 1 0 0 Nucleus 1 0.50023098088478 1 0.99953803823044 hm5C_site_43958 DeepMRMD:1;iRNA_m5C:0.99953803823044 43959 chr19 49611699 49611699 1 + G T UCEC 49611710 + 49611690 49611730 41 CGCCGGAGTGAAGAGGTCGTCCTCTCCATCTGCTGTGTTTG CGCCGGAGTTAAGAGGTCGTCCTCTCCATCTGCTGTGTTTG < 41bp 1 0.04993345602024 1 0.0359221994876862 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SNRNP70 ENSG00000104852 CDS Human protein_coding chr19:49611710 chr19:49611699 stoploss 0.627 0 10 hm5C_associated_SNPs_45145 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43959 DeepMRMD:1;iRNA_m5C:0.999536712157815 43960 chr17 78078655 78078655 1 + C T UCEC 78078646 + 78078626 78078666 41 CAGTGCGACGTCCCCCCCAACAGCCGCTTCGATTGCGCCCC CAGTGCGACGTCCCCCCCAACAGCCGCTTTGATTGCGCCCC < 41bp 1 0.30887562423689 1 0.625185608863831 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78078646 chr17:78078655 synonymous SNV . 0 30 hm5C_associated_SNPs_45146 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921094 0.749628782272338 0.999536712157813 hm5C_site_43960 DeepMRMD:0.749628782272338;iRNA_m5C:0.999536712157813 43961 chrX 123229236 123229236 1 + C T UCEC 123229250 + 123229230 123229270 41 AAAGAACAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT AAAGAATAGACGAGAGAGAACAGAACTGAAGCCTGATTTCT < 41bp 1 0.45243727507696 1 0.459439784288406 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STAG2 ENSG00000101972 CDS Human protein_coding chrX:123229250 chrX:123229236 synonymous SNV . 0 7 hm5C_associated_SNPs_45148 0 0 1 0 2 Nucleus 1 0.50023164392114 1 0.99953671215772 hm5C_site_43961 DeepMRMD:1;iRNA_m5C:0.99953671215772 43962 chr15 41192187 41192187 1 + G A UCEC 41192201 + 41192181 41192221 41 TACCACGTGCAACGGGAGGCCCGAGATGTCTGGCGCACCTA TACCACATGCAACGGGAGGCCCGAGATGTCTGGCGCACCTA < 41bp 1 0.36569982306505 1 0.454179346561432 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192201 chr15:41192187 nonsynonymous SNV 0.986 3 7 hm5C_associated_SNPs_45149 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_43962 DeepMRMD:1;iRNA_m5C:0.999536712157815 43963 chr11 61725716 61725716 1 + C T UCEC 61725725 + 61725705 61725745 41 GAGCTGGACCTCGTTGTGCCCGTCTTCACGTTCCTGCAGTT GAGCTGGACCTTGTTGTGCCCGTCTTCACGTTCCTGCAGTT < 41bp 1 0.194979537838536 1 0.140045523643494 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61725725 chr11:61725716 synonymous SNV . 0 12 hm5C_associated_SNPs_45151 3 0 0 0 2 chromatin 1 0.500231643935871 1 0.999536712128257 hm5C_site_43963 DeepMRMD:1;iRNA_m5C:0.999536712128257 Vitelliform macular dystrophy type 2 Vitelliform macular dystrophy type 2 43964 chr19 36128132 36128132 1 + G A UCEC 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT GCCTTCAGCCACTTCCCATCCTTCCTTAAGGCCAAGGTGAT < 41bp 1 0.165758593523539 1 0.515446662902832 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128132 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_45152 0 0 1 0 1 Ribosome 1 0.500231643921092 0.969106674194336 0.999536712157815 hm5C_site_43964 DeepMRMD:0.969106674194336;iRNA_m5C:0.999536712157815 43965 chrX 73044055 73044055 1 + A G UCEC 73044044 - 73044024 73044064 41 GTTATCTATTGTGTGCCAATCTCATTGCTAGGCATTGGGGA GTTATCTATCGTGTGCCAATCTCATTGCTAGGCATTGGGGA < 41bp 1 0.105244983172896 1 0.193599224090576 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044044 chrX:73044055 . . 0 10 hm5C_associated_SNPs_45153 0 0 1 2 0 unknown 1 0.500231627093331 1 0.999536745813338 hm5C_site_43965 DeepMRMD:1;iRNA_m5C:0.999536745813338 43966 chrX 73044055 73044055 1 + A G UCEC 73044072 - 73044052 73044092 41 TGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATTGTG TGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATCGTG < 41bp 1 0.117420220471024 1 0.0741501748561859 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044072 chrX:73044055 . . 0 38 hm5C_associated_SNPs_45154 0 0 1 2 0 unknown 1 0.500231639259904 1 0.999536721480191 hm5C_site_43966 DeepMRMD:1;iRNA_m5C:0.999536721480191 43967 chrX 73044055 73044055 1 + A G UCEC 73044074 - 73044054 73044094 41 ATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATTG ATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATCG < 41bp 1 0.263214542591734 1 0.197937965393066 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044074 chrX:73044055 . . 0 40 hm5C_associated_SNPs_45155 0 0 1 2 0 unknown 1 0.500231623991813 1 0.999536752016374 hm5C_site_43967 DeepMRMD:1;iRNA_m5C:0.999536752016374 43968 chrX 73044055 73044055 1 + A G UCEC 73044075 - 73044055 73044095 41 GATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATT GATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATC < 41bp 1 0.0717803136731025 1 0.0313075482845306 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044075 chrX:73044055 . . 0 41 hm5C_associated_SNPs_45156 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_43968 DeepMRMD:1;iRNA_m5C:0.999536712157815 43969 chr12 53663743 53663743 1 + C T UCEC 53663747 + 53663727 53663767 41 GGGCATTGTATGAGAGCTGCCAGTTCTTCCTTTCAGGCCTG GGGCATTGTATGAGAGTTGCCAGTTCTTCCTTTCAGGCCTG < 41bp 1 0.236750101727836 1 0.391987860202789 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663747 chr12:53663743 synonymous SNV . 0 17 hm5C_associated_SNPs_45157 0 0 1 0 0 Nucleus 1 0.50023164947677 1 0.99953670104646 hm5C_site_43969 DeepMRMD:1;iRNA_m5C:0.99953670104646 43970 chr3 179424786 179424786 1 + C T UCEC 179424778 + 179424758 179424798 41 TCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAATGA TCTCCATACAGAAAGCAGGACCCAGACATGTGGGAAAATGA < 41bp 1 0.0472680250049838 1 0.0818475484848022 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP13 ENSG00000058056 CDS Human protein_coding chr3:179424778 chr3:179424786 nonsynonymous SNV 0.996 2 29 hm5C_associated_SNPs_45159 0 0 0 0 2 Ribosome 1 0.500231643925339 1 0.999536712149322 hm5C_site_43970 DeepMRMD:1;iRNA_m5C:0.999536712149322 43971 chr7 148921517 148921517 1 + C A UCEC 148921521 + 148921501 148921541 41 AGCGGCTGCACACGGGCGAGCGGCCTTTCCAATGTGCACTG AGCGGCTGCACACGGGAGAGCGGCCTTTCCAATGTGCACTG < 41bp 1 0.483384036420861 1 0.654489636421204 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148921521 chr7:148921517 synonymous SNV . 0 17 hm5C_associated_SNPs_45160 0 0 1 0 0 Cytosol 1 0.500231593164038 0.691020727157592 0.999536813671924 hm5C_site_43971 DeepMRMD:0.691020727157592;iRNA_m5C:0.999536813671924 43972 chr12 132237681 132237681 1 + C T UCEC 132237672 + 132237652 132237692 41 CAATGTGTCTCCACAGCGACCGTGGCAGCCATGTATTACAG CAATGTGTCTCCACAGCGACCGTGGCAGCTATGTATTACAG < 41bp 1 0.35556011764302 1 0.324491739273071 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132237672 chr12:132237681 synonymous SNV . 0 30 hm5C_associated_SNPs_45161 0 0 1 0 1 Nucleus 1 0.500231837574788 1 0.999536324850423 hm5C_site_43972 DeepMRMD:1;iRNA_m5C:0.999536324850423 43973 chr5 72189510 72189510 1 + A G UCEC 72189491 + 72189471 72189511 41 CTTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCAG CTTTTGCCCTGTTAGGTGACCTCACAAAAGCTTGCTTTCGG < 41bp 1 0.215904657449118 1 0.113589257001877 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TNPO1 ENSG00000083312 CDS Human protein_coding chr5:72189491 chr5:72189510 nonsynonymous SNV 0.999 1 40 hm5C_associated_SNPs_45162 0 0 1 0 2 Cytosol 1 0.500231644212079 1 0.999536711575841 hm5C_site_43973 DeepMRMD:1;iRNA_m5C:0.999536711575841 43974 chr7 30661074 30661074 1 + C A UCEC 30661058 + 30661038 30661078 41 TCGTTCCTGTTATGACCTCTCCTGTCATGCACGAGCCACCA TCGTTCCTGTTATGACCTCTCCTGTCATGCACGAGCAACCA < 41bp 1 0.210353806485576 1 0.0916042625904083 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GARS ENSG00000106105 CDS Human protein_coding chr7:30661058 chr7:30661074 synonymous SNV . 0 37 hm5C_associated_SNPs_45163 0 0 1 0 0 Cytosol 1 0.500320819600499 1 0.999358360799003 hm5C_site_43974 DeepMRMD:1;iRNA_m5C:0.999358360799003 43975 chr2 113260567 113260567 1 + T G UCEC 113260557 + 113260537 113260577 41 GGGTGTGCTTCGGACTGCTTCAGAACCATATCATGTTGATA GGGTGTGCTTCGGACTGCTTCAGAACCATAGCATGTTGATA < 41bp 1 0.524367120529687 1 0.521205544471741 experiment 0.951265758940626 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113260557 chr2:113260567 stopgain 0.999 1 31 hm5C_associated_SNPs_45164 0 0 1 5 1 Cytosol 1 0.500231643921092 0.957588911056518 0.999536712157816 hm5C_site_43975 DeepMRMD:0.957588911056518;iRNA_m5C:0.999536712157816 43976 chr13 113485783 113485783 1 + A G UCEC 113485767 + 113485747 113485787 41 AGGAGTGCTGCATCGAAGGCCATGTCTACGTGCCCCACGTC AGGAGTGCTGCATCGAAGGCCATGTCTACGTGCCCCGCGTC < 41bp 1 0.166343826152762 1 0.618438303470612 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATP11A ENSG00000068650 CDS Human protein_coding chr13:113485767 chr13:113485783 nonsynonymous SNV 0.143 2 37 hm5C_associated_SNPs_45165 0 0 0 0 1 Endoplasmic reticulum 1 0.500230837077732 0.763123393058776 0.999538325844536 hm5C_site_43976 DeepMRMD:0.763123393058776;iRNA_m5C:0.999538325844536 43977 chr2 113243551 113243551 1 + G A UCEC 113243539 + 113243519 113243559 41 GGTGAATTACTACAGGGGTGCTGACAAACTGTGTCGCAAAG GGTGAATTACTACAGGGGTGCTGACAAACTGTATCGCAAAG < 41bp 1 0.237872091347248 1 0.205895036458969 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTL ENSG00000114999 CDS Human protein_coding chr2:113243539 chr2:113243551 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_45166 0 0 1 0 2 Cytosol 1 0.500231643921411 1 0.999536712157178 hm5C_site_43977 DeepMRMD:1;iRNA_m5C:0.999536712157178 43978 chr18 21478720 21478720 1 + C T UCEC 21478705 + 21478685 21478725 41 TTGTGTTTTGTTTCCAGAATCAGTTGCTCAACTACCGTTCT TTGTGTTTTGTTTCCAGAATCAGTTGCTCAACTACTGTTCT < 41bp 1 0.0482375652794778 1 0.155308812856674 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21478705 chr18:21478720 nonsynonymous SNV 0.857 3 36 hm5C_associated_SNPs_45167 0 0 0 0 2 Cytosol 1 0.500231640456941 1 0.999536719086118 hm5C_site_43978 DeepMRMD:1;iRNA_m5C:0.999536719086118 43979 chr16 630881 630881 1 + G A UCEC 630864 + 630844 630884 41 CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCCGTGCAG CTCCTCTGCCACAGCTCCGGCTCCTGGTGGTCGCCGTACAG < 41bp 1 0.269217264248568 1 0.274190366268158 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PIGQ ENSG00000007541 CDS Human protein_coding chr16:630864 chr16:630881 synonymous SNV . 0 38 hm5C_associated_SNPs_45168 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_43979 DeepMRMD:1;iRNA_m5C:0.999536712157815 43980 chr7 87530115 87530115 1 + A G UCEC 87530114 + 87530094 87530134 41 CGATAAGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAG CGATAAGTATGGTGGAACCTCGATTCAACTCCAGTTGAAAG < 41bp 1 0.178896635111943 1 0.291621267795563 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530114 chr7:87530115 synonymous SNV . 0 22 hm5C_associated_SNPs_45169 0 0 1 0 2 chromatin 1 0.500230129239621 1 0.999539741520758 hm5C_site_43980 DeepMRMD:1;iRNA_m5C:0.999539741520758 43981 chr7 87530115 87530115 1 + A G UCEC 87530119 + 87530099 87530139 41 AGTATGGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAG AGTATGGTGGAACCTCGATTCAACTCCAGTTGAAAGAGAAG < 41bp 1 0.243933201711609 1 0.446159332990646 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530119 chr7:87530115 synonymous SNV . 0 17 hm5C_associated_SNPs_45170 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_43981 DeepMRMD:1;iRNA_m5C:0.999536712157814 43982 chr7 87530115 87530115 1 + A G UCEC 87530124 + 87530104 87530144 41 GGTGGAACCTCAATTCAACTCCAGTTGAAAGAGAAGAAGAA GGTGGAACCTCGATTCAACTCCAGTTGAAAGAGAAGAAGAA < 41bp 1 0.385584096382655 1 0.651295602321625 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DBF4 ENSG00000006634 CDS Human protein_coding chr7:87530124 chr7:87530115 synonymous SNV . 0 12 hm5C_associated_SNPs_45171 0 0 1 0 2 chromatin 1 0.500231644151487 0.69740879535675 0.999536711697026 hm5C_site_43982 DeepMRMD:0.69740879535675;iRNA_m5C:0.999536711697026 43983 chr3 38294315 38294315 1 + G A UCEC 38294312 + 38294292 38294332 41 TTTGTTTGGTTCTTAGGCATCTGGTGTCGAAGGCTCAGATA TTTGTTTGGTTCTTAGGCATCTGATGTCGAAGGCTCAGATA < 41bp 1 0.381579939342347 1 0.21157169342041 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38294312 chr3:38294315 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_45172 0 0 1 0 1 Ribosome 1 0.500231643943525 1 0.999536712112949 hm5C_site_43983 DeepMRMD:1;iRNA_m5C:0.999536712112949 43984 chr19 46202123 46202123 1 + G A UCEC 46202126 + 46202106 46202146 41 CTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATCGGC CTACAGCCACTTCCCTCACACGGTCCGCTGGTTCCATCGGC < 41bp 1 0.186664144792668 1 0.839542508125305 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202126 chr19:46202123 nonsynonymous SNV 0.066 0 18 hm5C_associated_SNPs_45173 0 0 1 0 2 chromatin 1 0.500231643921093 0.32091498374939 0.999536712157814 hm5C_site_43984 DeepMRMD:0.32091498374939;iRNA_m5C:0.999536712157814 43985 chr5 56526790 56526790 1 + A G UCEC 56526784 + 56526764 56526804 41 GCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATT GCTTTGATTCTGCTATTGGGCGTCCTGATGGAGGTAAAATT < 41bp 1 0.201495431623147 1 0.0828137099742889 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526784 chr5:56526790 nonsynonymous SNV 0.999 0 27 hm5C_associated_SNPs_45174 0 0 1 1 1 Ribosome 1 0.500231643925908 1 0.999536712148183 hm5C_site_43985 DeepMRMD:1;iRNA_m5C:0.999536712148183 43986 chr4 126372080 126372080 1 + C T UCEC 126372100 + 126372080 126372120 41 CTATTTTGAAATCTCAGAAGCAGCTCCTAAAGGTACTATTG TTATTTTGAAATCTCAGAAGCAGCTCCTAAAGGTACTATTG < 41bp 1 0.0640881126184533 1 0.173912435770035 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126372100 chr4:126372080 synonymous SNV . 0 1 hm5C_associated_SNPs_45175 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_43986 DeepMRMD:1;iRNA_m5C:0.999536712157815 43987 chr10 126505165 126505165 1 + T A UCEC 126505159 + 126505139 126505179 41 TTACAGAAATCCATAACCATCAGCCTTGTTCAAAACTTTTT TTACAGAAATCCATAACCATCAGCCTAGTTCAAAACTTTTT < 41bp 1 0.251728744629644 1 0.100771427154541 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126505159 chr10:126505165 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_45176 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_43987 DeepMRMD:1;iRNA_m5C:0.999536712157816 43988 chr11 65402834 65402834 1 + C T UCEC 65402836 + 65402816 65402856 41 ACACGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGAT ACACGCCCTCCCTGCTGGTGCTGCGCCATGTCCTGGATGAT < 41bp 1 0.131238534530425 1 0.110754907131195 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402836 chr11:65402834 nonsynonymous SNV 0.992 4 19 hm5C_associated_SNPs_45177 0 0 1 0 1 Ribosome 1 0.500235734622748 1 0.999528530754505 hm5C_site_43988 DeepMRMD:1;iRNA_m5C:0.999528530754505 43989 chr11 65402834 65402834 1 + C T UCEC 65402839 + 65402819 65402859 41 CGCCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCC CGCCCTCCCTGCTGGTGCTGCGCCATGTCCTGGATGATGCC < 41bp 1 0.281152848947103 1 0.810563921928406 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402839 chr11:65402834 nonsynonymous SNV 0.992 4 16 hm5C_associated_SNPs_45178 0 0 1 0 1 Ribosome 1 0.500231678377179 0.378872156143188 0.999536643245643 hm5C_site_43989 DeepMRMD:0.378872156143188;iRNA_m5C:0.999536643245643 43990 chr11 65402834 65402834 1 + C T UCEC 65402841 + 65402821 65402861 41 CCCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTC CCCTCCCTGCTGGTGCTGCGCCATGTCCTGGATGATGCCTC < 41bp 1 0.0633037087052576 1 0.0900659263134003 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402841 chr11:65402834 nonsynonymous SNV 0.992 4 14 hm5C_associated_SNPs_45179 0 0 1 0 1 Ribosome 1 0.500231643923739 1 0.999536712152522 hm5C_site_43990 DeepMRMD:1;iRNA_m5C:0.999536712152522 43991 chr11 65402834 65402834 1 + C T UCEC 65402842 + 65402822 65402862 41 CCTCCCTGCTGGCGCTGCGCCATGTCCTGGATGATGCCTCC CCTCCCTGCTGGTGCTGCGCCATGTCCTGGATGATGCCTCC < 41bp 1 0.0898013488986853 1 0.602384805679321 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65402842 chr11:65402834 nonsynonymous SNV 0.992 4 13 hm5C_associated_SNPs_45180 0 0 1 0 1 Ribosome 1 0.500231648986065 0.795230388641358 0.999536702027869 hm5C_site_43991 DeepMRMD:0.795230388641358;iRNA_m5C:0.999536702027869 43992 chr10 81841643 81841643 1 + C T UCEC 81841623 + 81841603 81841643 41 GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCC GTCTTCTGGCCTCAGAGTATCCCTTATCAGAACCTTGGGCT < 41bp 1 0.286904967887729 1 0.0259994566440582 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient TMEM254 ENSG00000133678 CDS Human protein_coding chr10:81841623 chr10:81841643 nonsynonymous SNV 0.554 0 41 hm5C_associated_SNPs_45181 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643897994 1 0.999536712204011 hm5C_site_43992 DeepMRMD:1;iRNA_m5C:0.999536712204011 43993 chrX 41200757 41200757 1 + T A UCEC 41200758 + 41200738 41200778 41 TTTCTACGATAAAGACAGTTCAGGGTGGAGTTCTAGCAAAG TTTCTACGATAAAGACAGTACAGGGTGGAGTTCTAGCAAAG < 41bp 1 0.68359942499887 1 0.62121057510376 experiment 0.63280115000226 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41200758 chrX:41200757 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_45182 0 0 1 0 1 Nucleus 1 0.500231643923794 0.75757884979248 0.999536712152413 hm5C_site_43993 DeepMRMD:0.75757884979248;iRNA_m5C:0.999536712152413 43994 chrX 41200757 41200757 1 + T A UCEC 41200770 + 41200750 41200790 41 AGACAGTTCAGGGTGGAGTTCTAGCAAAGATAAGGATGCGT AGACAGTACAGGGTGGAGTTCTAGCAAAGATAAGGATGCGT < 41bp 1 0.314485236755084 1 0.205929577350616 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX3X ENSG00000215301 CDS Human protein_coding chrX:41200770 chrX:41200757 nonsynonymous SNV 1.000 0 8 hm5C_associated_SNPs_45183 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_43994 DeepMRMD:1;iRNA_m5C:0.999536712157815 43995 chr1 87805791 87805791 1 + A G UCEC 87805775 + 87805755 87805795 41 ATCGCCTGGTCCCGGGAGATCGGTTTCACTACATCAATGGC ATCGCCTGGTCCCGGGAGATCGGTTTCACTACATCAGTGGC < 41bp 1 0.416545483431495 1 0.442000269889832 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LMO4 ENSG00000143013 CDS Human protein_coding chr1:87805775 chr1:87805791 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_45184 0 0 1 0 1 Ribosome 1 0.500231643680657 1 0.999536712638687 hm5C_site_43995 DeepMRMD:1;iRNA_m5C:0.999536712638687 43996 chr11 76114892 76114892 1 + G T UCEC 76114912 + 76114892 76114932 41 GGGCAGGAGAAGATGGATGTCACAGCTCAAGAAGCGAGAAC TGGCAGGAGAAGATGGATGTCACAGCTCAAGAAGCGAGAAC < 41bp 1 0.49904104208329 1 0.294386386871338 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LOC100506127 ENSG00000179240 CDS Human protein_coding chr11:76114912 chr11:76114892 nonsynonymous SNV 0.007 1 1 hm5C_associated_SNPs_45185 0 0 0 0 1 unknown 1 0.500231643631903 1 0.999536712736194 hm5C_site_43996 DeepMRMD:1;iRNA_m5C:0.999536712736194 43997 chr1 244217424 244217424 1 + T C UCEC 244217405 + 244217385 244217425 41 TGAAGACGTGCTAGCAGCTGCCAGTTATCTCCACATGTATG TGAAGACGTGCTAGCAGCTGCCAGTTATCTCCACATGTACG < 41bp 1 0.162477838458639 1 0.105205059051514 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZBTB18 ENSG00000179456 CDS Human protein_coding chr1:244217405 chr1:244217424 synonymous SNV . 0 40 hm5C_associated_SNPs_45186 0 0 1 0 0 Cytosol 1 0.500233085019897 1 0.999533829960205 hm5C_site_43997 DeepMRMD:1;iRNA_m5C:0.999533829960205 43998 chr16 53348828 53348828 1 + C T UCEC 53348814 + 53348794 53348834 41 TACTCAACCTCAAGGAATTCCTGATACAGAAAGTCCAGTTC TACTCAACCTCAAGGAATTCCTGATACAGAAAGTTCAGTTC < 41bp 1 0.203638655913926 1 0.087408185005188 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD9 ENSG00000177200 CDS Human protein_coding chr16:53348814 chr16:53348828 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_45187 0 0 0 0 1 Ribosome 1 0.500231644266019 1 0.999536711467962 hm5C_site_43998 DeepMRMD:1;iRNA_m5C:0.999536711467962 43999 chr16 53348828 53348828 1 + C T UCEC 53348820 + 53348800 53348840 41 ACCTCAAGGAATTCCTGATACAGAAAGTCCAGTTCCAGTTA ACCTCAAGGAATTCCTGATACAGAAAGTTCAGTTCCAGTTA < 41bp 1 0.598260839398029 1 0.411942571401596 experiment 0.803478321203942 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CHD9 ENSG00000177200 CDS Human protein_coding chr16:53348820 chr16:53348828 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_45188 0 0 0 0 1 Ribosome 1 0.500231643921111 1 0.999536712157779 hm5C_site_43999 DeepMRMD:1;iRNA_m5C:0.999536712157779 44000 chr12 57600307 57600307 1 + T G UCEC 57600323 + 57600303 57600343 41 AGCCTGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC AGCCGGTTCCCCGGCCACCCCCATTCGGCTTACGAGCAGGC < 41bp 1 0.0185750207400847 1 0.176496356725693 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57600323 chr12:57600307 nonsynonymous SNV 0.912 3 5 hm5C_associated_SNPs_45189 0 0 1 0 1 Exosome 1 0.500231643919799 1 0.999536712160403 hm5C_site_44000 DeepMRMD:1;iRNA_m5C:0.999536712160403 44001 chr9 116053076 116053076 1 + C A UCEC 116053079 + 116053059 116053099 41 ATCTATGGAATAAATTTCTCCCCCAATGGGTAAAATAAACA ATCTATGGAATAAATTTATCCCCCAATGGGTAAAATAAACA < 41bp 1 0.233448322849978 1 0.112582713365555 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116053079 chr9:116053076 nonsynonymous SNV 0.994 4 18 hm5C_associated_SNPs_45190 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44001 DeepMRMD:1;iRNA_m5C:0.999536712157815 44002 chrX 153696876 153696876 1 + G T UCEC 153696889 + 153696869 153696909 41 AGAGCAAGAACCACCCCAAGCTGCTGCTACGCAGGTACCTG AGAGCAATAACCACCCCAAGCTGCTGCTACGCAGGTACCTG < 41bp 1 0.232190117473966 1 0.134073913097382 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696889 chrX:153696876 nonsynonymous SNV 0.997 4 8 hm5C_associated_SNPs_45191 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44002 DeepMRMD:1;iRNA_m5C:0.999536712157815 44003 chr6 168352448 168352448 1 + G A UCEC 168352459 + 168352439 168352479 41 ATGAAGCCCGAAAAGCCTTCCACACTCCAGCGGCCACAGGA ATGAAGCCCAAAAAGCCTTCCACACTCCAGCGGCCACAGGA < 41bp 1 0.114294226244505 1 0.0175021290779114 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168352459 chr6:168352448 nonsynonymous SNV 0.547 1 10 hm5C_associated_SNPs_45192 0 0 1 0 0 unknown 1 0.50023159241627 1 0.999536815167459 hm5C_site_44003 DeepMRMD:1;iRNA_m5C:0.999536815167459 44004 chr6 125550347 125550347 1 + G T UCEC 125550344 + 125550324 125550364 41 GAGATAAAACAAAAACTCGGCATGAACCTGATGAATGAATT GAGATAAAACAAAAACTCGGCATTAACCTGATGAATGAATT < 41bp 1 0.0667746256370425 1 0.0475977063179016 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550344 chr6:125550347 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_45193 0 0 1 0 2 Ribosome 1 0.50023164344372 1 0.999536713112559 hm5C_site_44004 DeepMRMD:1;iRNA_m5C:0.999536713112559 44005 chr1 227618460 227618460 1 + A C UCEC 227618466 + 227618446 227618486 41 TCCATGCCAGTACAAGATCCCGGACTGGTTCTTGAACAGAC TCCATGCCAGTACACGATCCCGGACTGGTTCTTGAACAGAC < 41bp 1 0.195972555307547 1 0.269975423812866 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC42BPA;ZNF678 ENSG00000234277;ENSG00000242757 ncRNA_exonic Human other chr1:227618466 chr1:227618460 . . 0 15 hm5C_associated_SNPs_45194 0 0 0 0 0 unknown 1 0.500231643921403 1 0.999536712157193 hm5C_site_44005 DeepMRMD:1;iRNA_m5C:0.999536712157193 44006 chr9 37501733 37501733 1 + C A UCEC 37501742 + 37501722 37501762 41 AATTTCGGATTCTATGAAGGCGAAGATTACTGCATATGTGA AATTTCGGATTATATGAAGGCGAAGATTACTGCATATGTGA < 41bp 1 0.299595262530412 1 0.307938396930695 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR1E ENSG00000137054 CDS Human protein_coding chr9:37501742 chr9:37501733 nonsynonymous SNV 0.998 4 12 hm5C_associated_SNPs_45195 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44006 DeepMRMD:1;iRNA_m5C:0.999536712157815 44007 chr9 35792613 35792613 1 + G A UCEC 35792598 + 35792578 35792618 41 GGGCACTGCCCGTGGACCTGCGGTTTGTCAGCTCCGAACTG GGGCACTGCCCGTGGACCTGCGGTTTGTCAGCTCCAAACTG < 41bp 1 0.532432931222266 1 0.511166572570801 experiment 0.935134137555467 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NPR2 ENSG00000159899 CDS Human protein_coding chr9:35792598 chr9:35792613 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_45196 0 0 1 0 0 chromatin 1 0.500231643921092 0.977666854858398 0.999536712157815 hm5C_site_44007 DeepMRMD:0.977666854858398;iRNA_m5C:0.999536712157815 44008 chr2 207175024 207175024 1 + G T UCEC 207175004 + 207174984 207175024 41 TGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGAG TGGCCTTAGATAAACCATGCCATCGTCATCCTCCAGCAGAT < 41bp 1 0.237302248697582 1 0.0627199113368988 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207175004 chr2:207175024 nonsynonymous SNV 0.076 0 41 hm5C_associated_SNPs_45197 0 0 0 0 0 Nucleus 1 0.500231643924028 1 0.999536712151945 hm5C_site_44008 DeepMRMD:1;iRNA_m5C:0.999536712151945 44009 chr1 214503554 214503554 1 + G T UCEC 214503545 + 214503525 214503565 41 TATTGATCTCCTGTACCCAACGGAAGATAGAAATGACCGGT TATTGATCTCCTGTACCCAACGGAAGATATAAATGACCGGT < 41bp 1 0.625174936289887 1 0.64493590593338 experiment 0.749650127420226 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503545 chr1:214503554 nonsynonymous SNV 0.995 4 30 hm5C_associated_SNPs_45198 0 0 1 2 2 Ribosome 1 0.500231637891586 0.71012818813324 0.999536724216828 hm5C_site_44009 DeepMRMD:0.71012818813324;iRNA_m5C:0.999536724216828 44010 chr19 7589924 7589924 1 + G T UCEC 7589936 + 7589916 7589956 41 CACCCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC CACCCCCATAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC < 41bp 1 0.29086826592796 1 0.091355174779892 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589936 chr19:7589924 stopgain 0.918 1 9 hm5C_associated_SNPs_45199 0 0 1 0 1 chromatin 1 0.50023164393589 1 0.99953671212822 hm5C_site_44010 DeepMRMD:1;iRNA_m5C:0.99953671212822 44011 chr2 169622173 169622173 1 + T G UCEC 169622178 + 169622158 169622198 41 GGTGGGTTTTTAACCTACTGCTATTGCTAGTACAAGGGTTG GGTGGGTTTTTAACCGACTGCTATTGCTAGTACAAGGGTTG < 41bp 1 0.101270957962163 1 0.0755776464939117 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169622178 chr2:169622173 nonsynonymous SNV 0.930 2 16 hm5C_associated_SNPs_45200 0 0 1 0 1 Endoplasmic reticulum 1 0.500231605740263 1 0.999536788519475 hm5C_site_44011 DeepMRMD:1;iRNA_m5C:0.999536788519475 44012 chr20 35862434 35862434 1 + T C UCEC 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCGGATCGGTGCCAATGTCTC < 41bp 1 0.420439539081198 1 0.475726157426834 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862434 synonymous SNV . 0 27 hm5C_associated_SNPs_45201 0 0 1 0 2 Ribosome 1 0.50023164369383 1 0.999536712612339 hm5C_site_44012 DeepMRMD:1;iRNA_m5C:0.999536712612339 44013 chr11 722135 722135 1 + C T UCEC 722139 + 722119 722159 41 CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTCGGGCCTCTG CCAGCGCCGCGGAGCTTGTGCACTTCCTCTTCGGGCCTCTG < 41bp 1 0.133579373077141 1 0.0465401411056519 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722139 chr11:722135 synonymous SNV . 0 17 hm5C_associated_SNPs_45202 0 0 1 0 2 Cytosol 1 0.5002316439211 1 0.999536712157801 hm5C_site_44013 DeepMRMD:1;iRNA_m5C:0.999536712157801 44014 chr2 201435948 201435948 1 + A C UCEC 201435937 + 201435917 201435957 41 ATAATCTTTCTGCAGACACTCCCTGTGCAACAGTTTTAGAT ATAATCTTTCTGCAGACACTCCCTGTGCAACCGTTTTAGAT < 41bp 1 0.214340371965955 1 0.0672541260719299 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SGO2 ENSG00000163535 CDS Human protein_coding chr2:201435937 chr2:201435948 synonymous SNV . 0 32 hm5C_associated_SNPs_45203 0 0 1 0 0 cytosol 1 0.500231644205244 1 0.999536711589513 hm5C_site_44014 DeepMRMD:1;iRNA_m5C:0.999536711589513 44015 chr10 70666630 70666630 1 + A C UCEC 70666624 + 70666604 70666644 41 AGAAGGATTTAATAGACTTTCAGATGAATTCTCCAAATCTC AGAAGGATTTAATAGACTTTCAGATGCATTCTCCAAATCTC < 41bp 1 0.511680265184346 1 0.439142674207687 experiment 0.976639469631309 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX50 ENSG00000107625 CDS Human protein_coding chr10:70666624 chr10:70666630 nonsynonymous SNV 0.998 0 27 hm5C_associated_SNPs_45204 0 0 1 0 0 chromatin 1 0.500231643921605 1 0.999536712156789 hm5C_site_44015 DeepMRMD:1;iRNA_m5C:0.999536712156789 44016 chr17 53852187 53852187 1 + A C UCEC 53852185 + 53852165 53852205 41 ACTTCGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATT ACTTCGATAACCCGGGTGGCCACATTCCGTCCTGGCTCATT < 41bp 1 0.382251610603269 1 0.0713023245334625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCTP ENSG00000141179 CDS Human protein_coding chr17:53852185 chr17:53852187 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_45205 0 0 1 1 2 Ribosome 1 0.500212976615997 1 0.999574046768006 hm5C_site_44016 DeepMRMD:1;iRNA_m5C:0.999574046768006 44017 chr6 38029472 38029472 1 + G A UCEC 38029468 + 38029448 38029488 41 CACCAGTGACAACAACAATACCTCGATAACCACGCCAACTC CACCAGTGACAACAACAATACCTCAATAACCACGCCAACTC < 41bp 1 0.229578605569402 1 0.187166929244995 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFAND3 ENSG00000156639 CDS Human protein_coding chr6:38029468 chr6:38029472 synonymous SNV . 0 25 hm5C_associated_SNPs_45206 0 0 1 0 0 Cytosol 1 0.500231399887502 1 0.999537200224997 hm5C_site_44017 DeepMRMD:1;iRNA_m5C:0.999537200224997 44018 chr6 38029472 38029472 1 + G A UCEC 38029469 + 38029449 38029489 41 ACCAGTGACAACAACAATACCTCGATAACCACGCCAACTCT ACCAGTGACAACAACAATACCTCAATAACCACGCCAACTCT < 41bp 1 0.664187763984804 1 0.725233674049377 experiment 0.671624472030392 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZFAND3 ENSG00000156639 CDS Human protein_coding chr6:38029469 chr6:38029472 synonymous SNV . 0 24 hm5C_associated_SNPs_45207 0 0 1 0 0 Cytosol 1 0.500231643921094 0.549532651901246 0.999536712157812 hm5C_site_44018 DeepMRMD:0.549532651901246;iRNA_m5C:0.999536712157812 44019 chrX 154005106 154005106 1 + G T UCEC 154005114 + 154005094 154005134 41 GAAGAAGAAGAAGAAGAAAGCAAAAGAGGTAGAATTGGTTT GAAGAAGAAGAATAAGAAAGCAAAAGAGGTAGAATTGGTTT < 41bp 1 0.680083499262874 1 0.494701117277145 experiment 0.639833001474252 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DKC1 ENSG00000130826 CDS Human protein_coding chrX:154005114 chrX:154005106 nonsynonymous SNV 1.000 5 13 hm5C_associated_SNPs_45208 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_44019 DeepMRMD:1;iRNA_m5C:0.999536712157815 44020 chr2 131801886 131801886 1 + C T UCEC 131801875 + 131801855 131801895 41 AGGCCAGCATCTGGCAGGACCTGCTCCGCCGCGACGTGTTG AGGCCAGCATCTGGCAGGACCTGCTCCGCCGTGACGTGTTG < 41bp 1 0.194853534978179 1 0.0958689749240875 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131801875 chr2:131801886 synonymous SNV . 0 32 hm5C_associated_SNPs_45209 0 0 0 0 1 nucleus 1 0.500231644230113 1 0.999536711539775 hm5C_site_44020 DeepMRMD:1;iRNA_m5C:0.999536711539775 44021 chr5 131953926 131953926 1 + T G UCEC 131953938 + 131953918 131953958 41 GATGATTGTTATGAGGACAACAGAACTTGTGAACAAGGATC GATGATTGGTATGAGGACAACAGAACTTGTGAACAAGGATC < 41bp 1 0.536395426813637 1 0.514515340328217 experiment 0.927209146372725 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131953938 chr5:131953926 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_45210 0 0 1 0 1 Cytosol 1 0.500231647043405 0.970969319343566 0.999536705913191 hm5C_site_44021 DeepMRMD:0.970969319343566;iRNA_m5C:0.999536705913191 44022 chr14 76638273 76638273 1 + A G UCEC 76638267 + 76638247 76638287 41 TAATCTTCTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAG TAATCTTCTGCCCAAGTGGGCTCCTGGTCATTGTTCTGAAG < 41bp 1 0.281554833953444 1 0.189268440008163 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76638267 chr14:76638273 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_45211 0 0 1 0 2 Nucleus 1 0.500231641525325 1 0.999536716949351 hm5C_site_44022 DeepMRMD:1;iRNA_m5C:0.999536716949351 44023 chr15 91479520 91479520 1 + G T UCEC 91479512 + 91479492 91479532 41 ACAGCGCTCCTGTTTGTGCTCAGCCATTGAAAAGGATGGTG ACAGCGCTCCTGTTTGTGCTCAGCCATTTAAAAGGATGGTG < 41bp 1 0.200789434032124 1 0.129699647426605 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UNC45A ENSG00000140553 CDS Human protein_coding chr15:91479512 chr15:91479520 stopgain 1.000 0 29 hm5C_associated_SNPs_45212 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44023 DeepMRMD:1;iRNA_m5C:0.999536712157815 44024 chr15 52356230 52356230 1 + A C UCEC 52356223 + 52356203 52356243 41 AAGAAGAAGTACAAGTTGATCCCCGAAAATATTTGGATGGA AAGAAGAAGTACAAGTTGATCCCCGAACATATTTGGATGGA < 41bp 1 0.520778867838858 1 0.369929701089859 experiment 0.958442264322285 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356223 chr15:52356230 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_45213 0 0 1 0 0 Ribosome 1 0.500231643921099 1 0.999536712157803 hm5C_site_44024 DeepMRMD:1;iRNA_m5C:0.999536712157803 44025 chr15 52356230 52356230 1 + A C UCEC 52356225 + 52356205 52356245 41 GAAGAAGTACAAGTTGATCCCCGAAAATATTTGGATGGAGA GAAGAAGTACAAGTTGATCCCCGAACATATTTGGATGGAGA < 41bp 1 0.424985248584037 1 0.312550872564316 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356225 chr15:52356230 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_45214 0 0 1 0 0 Ribosome 1 0.500231643921103 1 0.999536712157794 hm5C_site_44025 DeepMRMD:1;iRNA_m5C:0.999536712157794 44026 chr15 52356230 52356230 1 + A C UCEC 52356226 + 52356206 52356246 41 AAGAAGTACAAGTTGATCCCCGAAAATATTTGGATGGAGAT AAGAAGTACAAGTTGATCCCCGAACATATTTGGATGGAGAT < 41bp 1 0.201922432152665 1 0.263638764619827 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52356226 chr15:52356230 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_45215 0 0 1 0 0 Ribosome 1 0.500231644017508 1 0.999536711964985 hm5C_site_44026 DeepMRMD:1;iRNA_m5C:0.999536711964985 44027 chr17 21731026 21731026 1 + G T UCEC 21731040 + 21731020 21731060 41 GATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT GATAAATAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTT < 41bp 1 0.253269590955974 1 0.384202301502228 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731040 chr17:21731026 stopgain 0.514 0 7 hm5C_associated_SNPs_45216 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44027 DeepMRMD:1;iRNA_m5C:0.999536712157815 44028 chrX 49031029 49031029 1 + G C UCEC 49031034 + 49031014 49031054 41 CCTGCAGACCCCGCAGATGGCCCGGTGTAGGCGAACTTCCC CCTGCAGACCCCGCACATGGCCCGGTGTAGGCGAACTTCCC < 41bp 1 0.534671262501227 1 0.123566091060638 experiment 0.930657474997545 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PLP2 ENSG00000102007 CDS Human protein_coding chrX:49031034 chrX:49031029 nonsynonymous SNV 0.568 2 16 hm5C_associated_SNPs_45218 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44028 DeepMRMD:1;iRNA_m5C:0.999536712157815 44029 chr9 100405549 100405549 1 + G T UCEC 100405545 + 100405525 100405565 41 ATTAGTTGGACTACTGAATGCCAGGAATTACAATTTTGGTG ATTAGTTGGACTACTGAATGCCAGTAATTACAATTTTGGTG < 41bp 1 0.194256183207203 1 0.165948569774628 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100405545 chr9:100405549 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_45219 0 0 1 0 2 Nucleus 1 0.500231630470201 1 0.999536739059599 hm5C_site_44029 DeepMRMD:1;iRNA_m5C:0.999536739059599 44030 chr4 126398362 126398362 1 + G T UCEC 126398352 + 126398332 126398372 41 AGAGTTACAGTTGGAGGTATCAGATCTCTAGAACCAATCCT AGAGTTACAGTTGGAGGTATCAGATCTCTATAACCAATCCT < 41bp 1 0.130204071306556 1 0.792271018028259 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAT4 ENSG00000196159 CDS Human protein_coding chr4:126398352 chr4:126398362 stopgain 0.437 0 31 hm5C_associated_SNPs_45220 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.415457963943482 0.999536712157815 hm5C_site_44030 DeepMRMD:0.415457963943482;iRNA_m5C:0.999536712157815 44031 chr7 130021518 130021518 1 + C T UCEC 130021498 + 130021478 130021518 41 TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTC TCTGGCGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTT < 41bp 1 0.598589265749564 1 0.156729847192764 experiment 0.802821468500873 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021498 chr7:130021518 synonymous SNV . 0 41 hm5C_associated_SNPs_45221 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44031 DeepMRMD:1;iRNA_m5C:0.999536712157815 44032 chr7 130021518 130021518 1 + C T UCEC 130021503 + 130021483 130021523 41 CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGT CGGGGGCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGT < 41bp 1 0.172403706450607 1 0.132423728704453 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021503 chr7:130021518 synonymous SNV . 0 36 hm5C_associated_SNPs_45222 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643909467 1 0.999536712181066 hm5C_site_44032 DeepMRMD:1;iRNA_m5C:0.999536712181066 44033 chr7 130021518 130021518 1 + C T UCEC 130021505 + 130021485 130021525 41 GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGC GGGGCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGC < 41bp 1 0.205851410990566 1 0.0457748174667358 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021505 chr7:130021518 synonymous SNV . 0 34 hm5C_associated_SNPs_45223 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157816 hm5C_site_44033 DeepMRMD:1;iRNA_m5C:0.999536712157816 44034 chr7 130021518 130021518 1 + C T UCEC 130021506 + 130021486 130021526 41 GGGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCC GGGCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGCC < 41bp 1 0.445216635195743 1 0.495363771915436 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021506 chr7:130021518 synonymous SNV . 0 33 hm5C_associated_SNPs_45224 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44034 DeepMRMD:1;iRNA_m5C:0.999536712157815 44035 chr7 130021518 130021518 1 + C T UCEC 130021507 + 130021487 130021527 41 GGCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCC GGCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGCCC < 41bp 1 0.116464514648787 1 0.108918428421021 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021507 chr7:130021518 synonymous SNV . 0 32 hm5C_associated_SNPs_45225 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921071 1 0.999536712157859 hm5C_site_44035 DeepMRMD:1;iRNA_m5C:0.999536712157859 44036 chr7 130021518 130021518 1 + C T UCEC 130021508 + 130021488 130021528 41 GCCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCT GCCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGCCCT < 41bp 1 0.0428284070544618 1 0.401971280574799 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021508 chr7:130021518 synonymous SNV . 0 31 hm5C_associated_SNPs_45226 0 0 0 0 2 Endoplasmic reticulum 1 0.500230080380168 1 0.999539839239663 hm5C_site_44036 DeepMRMD:1;iRNA_m5C:0.999539839239663 44037 chr7 130021518 130021518 1 + C T UCEC 130021509 + 130021489 130021529 41 CCTGCCCACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTT CCTGCCCACCCTGGCTCCCCCATCGACGTTCGAGTGCCCTT < 41bp 1 0.362858475176635 1 0.26350349187851 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021509 chr7:130021518 synonymous SNV . 0 30 hm5C_associated_SNPs_45227 0 0 0 0 2 Endoplasmic reticulum 1 0.500190486076613 1 0.999619027846773 hm5C_site_44037 DeepMRMD:1;iRNA_m5C:0.999619027846773 44038 chr7 130021518 130021518 1 + C T UCEC 130021515 + 130021495 130021535 41 CACCCTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAG CACCCTGGCTCCCCCATCGACGTTCGAGTGCCCTTCCCCAG < 41bp 1 0.233854821292186 1 0.389465570449829 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021515 chr7:130021518 synonymous SNV . 0 24 hm5C_associated_SNPs_45228 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921088 1 0.999536712157823 hm5C_site_44038 DeepMRMD:1;iRNA_m5C:0.999536712157823 44039 chr7 130021518 130021518 1 + C T UCEC 130021519 + 130021499 130021539 41 CTGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATC CTGGCTCCCCCATCGACGTTCGAGTGCCCTTCCCCAGCATC < 41bp 1 0.493081201423102 1 0.294633537530899 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021519 chr7:130021518 synonymous SNV . 0 20 hm5C_associated_SNPs_45229 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44039 DeepMRMD:1;iRNA_m5C:0.999536712157815 44040 chr7 130021518 130021518 1 + C T UCEC 130021525 + 130021505 130021545 41 CCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCG CCCCCATCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCG < 41bp 1 0.0649889369305737 1 0.0116992890834808 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021525 chr7:130021518 synonymous SNV . 0 14 hm5C_associated_SNPs_45230 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643931952 1 0.999536712136097 hm5C_site_44040 DeepMRMD:1;iRNA_m5C:0.999536712136097 44041 chr7 130021518 130021518 1 + C T UCEC 130021526 + 130021506 130021546 41 CCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGG CCCCATCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGG < 41bp 1 0.0253374786519072 1 0.0302430391311646 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021526 chr7:130021518 synonymous SNV . 0 13 hm5C_associated_SNPs_45231 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921095 1 0.999536712157811 hm5C_site_44041 DeepMRMD:1;iRNA_m5C:0.999536712157811 44042 chr7 130021518 130021518 1 + C T UCEC 130021527 + 130021507 130021547 41 CCCATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGT CCCATCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGGT < 41bp 1 0.142416053464088 1 0.0433138608932495 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021527 chr7:130021518 synonymous SNV . 0 12 hm5C_associated_SNPs_45232 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44042 DeepMRMD:1;iRNA_m5C:0.999536712157815 44043 chr7 130021518 130021518 1 + C T UCEC 130021530 + 130021510 130021550 41 ATCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA ATCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAA < 41bp 1 0.679089077444628 1 0.597406566143036 experiment 0.641821845110745 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021530 chr7:130021518 synonymous SNV . 0 9 hm5C_associated_SNPs_45233 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921094 0.805186867713928 0.999536712157812 hm5C_site_44043 DeepMRMD:0.805186867713928;iRNA_m5C:0.999536712157812 44044 chr7 130021518 130021518 1 + C T UCEC 130021531 + 130021511 130021551 41 TCGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG TCGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAG < 41bp 1 0.380971863002142 1 0.29364675283432 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021531 chr7:130021518 synonymous SNV . 0 8 hm5C_associated_SNPs_45234 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643922804 1 0.999536712154391 hm5C_site_44044 DeepMRMD:1;iRNA_m5C:0.999536712154391 44045 chr7 130021518 130021518 1 + C T UCEC 130021532 + 130021512 130021552 41 CGACGTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA CGACGTTCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGA < 41bp 1 0.306051187213352 1 0.199511855840683 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021532 chr7:130021518 synonymous SNV . 0 7 hm5C_associated_SNPs_45235 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157815 hm5C_site_44045 DeepMRMD:1;iRNA_m5C:0.999536712157815 44046 chr7 130021518 130021518 1 + C T UCEC 130021536 + 130021516 130021556 41 GTCCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT GTTCGAGTGCCCTTCCCCAGCATCCAGGCGGTCAAGATCTT < 41bp 1 0.187331587875063 1 0.166053175926208 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021536 chr7:130021518 synonymous SNV . 0 3 hm5C_associated_SNPs_45236 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44046 DeepMRMD:1;iRNA_m5C:0.999536712157815 44047 chr11 118495733 118495733 1 + G A UCEC 118495741 + 118495721 118495761 41 AGCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTA AGCATGATTCCAACAGGGGGCCGAGCCCCTGGGCCCCCCTA < 41bp 1 0.201624237312185 1 0.438468396663666 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495741 chr11:118495733 nonsynonymous SNV 0.997 1 13 hm5C_associated_SNPs_45237 0 0 0 0 2 Cytosol 1 0.500230934146931 1 0.999538131706137 hm5C_site_44047 DeepMRMD:1;iRNA_m5C:0.999538131706137 44048 chr11 118495733 118495733 1 + G A UCEC 118495742 + 118495722 118495762 41 GCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTAC GCATGATTCCAACAGGGGGCCGAGCCCCTGGGCCCCCCTAC < 41bp 1 0.355659100771804 1 0.820199251174927 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118495742 chr11:118495733 nonsynonymous SNV 0.997 1 12 hm5C_associated_SNPs_45238 0 0 0 0 2 Cytosol 1 0.500231643921092 0.359601497650146 0.999536712157815 hm5C_site_44048 DeepMRMD:0.359601497650146;iRNA_m5C:0.999536712157815 44049 chr20 47641899 47641899 1 + T C UCEC 47641892 + 47641872 47641912 41 TCCACATAGAGACGGAGGATCAGGGCATGTATAAGTACATG TCCACATAGAGACGGAGGATCAGGGCACGTATAAGTACATG < 41bp 1 0.587158257961579 1 0.896369218826294 experiment 0.825683484076843 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47641892 chr20:47641899 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_45239 0 0 0 0 1 Cytosol 1 0.500231643921093 0.207261562347412 0.999536712157815 hm5C_site_44049 DeepMRMD:0.207261562347412;iRNA_m5C:0.999536712157815 44050 chr17 4859361 4859361 1 + G T UCEC 4859343 + 4859323 4859363 41 GATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGC GATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCATGC < 41bp 1 0.698498550720247 1 0.508149325847626 experiment 0.603002898559505 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859343 chr17:4859361 nonsynonymous SNV 0.997 2 39 hm5C_associated_SNPs_45240 0 0 1 0 1 nucleus 1 0.500231646090482 0.983701348304748 0.999536707819036 hm5C_site_44050 DeepMRMD:0.983701348304748;iRNA_m5C:0.999536707819036 44051 chr17 4859361 4859361 1 + G T UCEC 4859344 + 4859324 4859364 41 ATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCC ATGACTTGACAGTCACCAACCCCAAGAGGATTGCCCATGCC < 41bp 1 0.538488253429809 1 0.276055067777634 experiment 0.923023493140381 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859344 chr17:4859361 nonsynonymous SNV 0.997 2 38 hm5C_associated_SNPs_45241 0 0 1 0 1 nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_44051 DeepMRMD:1;iRNA_m5C:0.999536712157815 44052 chr17 4859361 4859361 1 + G T UCEC 4859345 + 4859325 4859365 41 TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCAGGCCG TGACTTGACAGTCACCAACCCCAAGAGGATTGCCCATGCCG < 41bp 1 0.169012587530584 1 0.195262938737869 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859345 chr17:4859361 nonsynonymous SNV 0.997 2 37 hm5C_associated_SNPs_45242 0 0 1 0 1 nucleus 1 0.500231643914754 1 0.999536712170492 hm5C_site_44052 DeepMRMD:1;iRNA_m5C:0.999536712170492 44053 chr17 4859361 4859361 1 + G T UCEC 4859357 + 4859337 4859377 41 CACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGG CACCAACCCCAAGAGGATTGCCCATGCCGTTGAGAAGAAGG < 41bp 1 0.133311007051351 1 0.0661524534225464 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859357 chr17:4859361 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_45243 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44053 DeepMRMD:1;iRNA_m5C:0.999536712157815 44054 chr17 4859361 4859361 1 + G T UCEC 4859358 + 4859338 4859378 41 ACCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGC ACCAACCCCAAGAGGATTGCCCATGCCGTTGAGAAGAAGGC < 41bp 1 0.0826665609094273 1 0.0722693204879761 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859358 chr17:4859361 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_45244 0 0 1 0 1 nucleus 1 0.500231643921523 1 0.999536712156954 hm5C_site_44054 DeepMRMD:1;iRNA_m5C:0.999536712156954 44055 chr17 4859361 4859361 1 + G T UCEC 4859359 + 4859339 4859379 41 CCAACCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCC CCAACCCCAAGAGGATTGCCCATGCCGTTGAGAAGAAGGCC < 41bp 1 0.148122735492013 1 0.162793725728989 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859359 chr17:4859361 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_45245 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44055 DeepMRMD:1;iRNA_m5C:0.999536712157815 44056 chr17 4859361 4859361 1 + G T UCEC 4859363 + 4859343 4859383 41 CCCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCA CCCCAAGAGGATTGCCCATGCCGTTGAGAAGAAGGCCTGCA < 41bp 1 0.174871978210715 1 0.078055202960968 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859363 chr17:4859361 nonsynonymous SNV 0.997 2 19 hm5C_associated_SNPs_45246 0 0 1 0 1 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44056 DeepMRMD:1;iRNA_m5C:0.999536712157815 44057 chr17 4859361 4859361 1 + G T UCEC 4859364 + 4859344 4859384 41 CCCAAGAGGATTGCCCAGGCCGTTGAGAAGAAGGCCTGCAA CCCAAGAGGATTGCCCATGCCGTTGAGAAGAAGGCCTGCAA < 41bp 1 0.345388425854297 1 0.425027668476105 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859364 chr17:4859361 nonsynonymous SNV 0.997 2 18 hm5C_associated_SNPs_45247 0 0 1 0 1 nucleus 1 0.500231643921095 1 0.999536712157809 hm5C_site_44057 DeepMRMD:1;iRNA_m5C:0.999536712157809 44058 chr17 4859361 4859361 1 + G T UCEC 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCATGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA < 41bp 1 0.140781727284817 1 0.0729342997074127 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859361 nonsynonymous SNV 0.997 2 4 hm5C_associated_SNPs_45248 0 0 1 0 1 nucleus 1 0.500231642716494 1 0.999536714567012 hm5C_site_44058 DeepMRMD:1;iRNA_m5C:0.999536714567012 44059 chr1 166818983 166818983 1 + G T UCEC 166818969 + 166818949 166818989 41 TTGATAACCAGGGCGAAAAGCCTGTCTTGGTCAAGACACCA TTGATAACCAGGGCGAAAAGCCTGTCTTGGTCAATACACCA < 41bp 1 0.0881248620313878 1 0.0535743236541748 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POGK ENSG00000143157 CDS Human protein_coding chr1:166818969 chr1:166818983 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_45250 0 0 1 0 0 Nucleus 1 0.500231643921206 1 0.999536712157587 hm5C_site_44059 DeepMRMD:1;iRNA_m5C:0.999536712157587 44060 chr7 128445506 128445506 1 + T C UCEC 128445505 + 128445485 128445525 41 AGAAATGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGT AGAAATGGATTTCTTAGAGCCCGATCCTGAAATGCAGTTGT < 41bp 1 0.0796423921032068 1 0.275891304016113 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445505 chr7:128445506 synonymous SNV . 0 22 hm5C_associated_SNPs_45251 0 0 1 0 2 chromatin 1 0.500231643924788 1 0.999536712150424 hm5C_site_44060 DeepMRMD:1;iRNA_m5C:0.999536712150424 44061 chr7 128445506 128445506 1 + T C UCEC 128445510 + 128445490 128445530 41 TGGATTTCTTAGAGCCTGATCCTGAAATGCAGTTGTTACGG TGGATTTCTTAGAGCCCGATCCTGAAATGCAGTTGTTACGG < 41bp 1 0.285919787589947 1 0.481176674365997 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445510 chr7:128445506 synonymous SNV . 0 17 hm5C_associated_SNPs_45252 0 0 1 0 2 chromatin 1 0.500231643966858 1 0.999536712066284 hm5C_site_44061 DeepMRMD:1;iRNA_m5C:0.999536712066284 44062 chr22 42032231 42032231 1 + G A UCEC 42032243 + 42032223 42032263 41 ATATTTACGTCTTACAGGAGCTGGATAATCCAGGTCAGTAA ATATTTACATCTTACAGGAGCTGGATAATCCAGGTCAGTAA < 41bp 1 0.668102698080147 1 0.31388846039772 experiment 0.663794603839705 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42032243 chr22:42032231 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_45253 0 0 1 0 1 Cytosol 1 0.500231643919213 1 0.999536712161573 hm5C_site_44062 DeepMRMD:1;iRNA_m5C:0.999536712161573 44063 chr1 65684536 65684536 1 + G A UCEC 65684546 + 65684526 65684566 41 CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG CTTAAAGATCATCTCAGCCGCCGTTGGATTCACCCTCCTAG < 41bp 1 0.0868616512504413 1 0.0867177546024323 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AK4 ENSG00000162433 CDS Human protein_coding chr1:65684546 chr1:65684536 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_45254 0 0 0 0 2 chromatin 1 0.500231621100767 1 0.999536757798466 hm5C_site_44063 DeepMRMD:1;iRNA_m5C:0.999536757798466 Multiple continuous traits in DGI samples 44064 chr1 154962719 154962719 1 + G T UCEC 154962708 + 154962688 154962728 41 CCCCTTTCCCTGAGCTGGAACAGTTTCTACAGGACACTATC CCCCTTTCCCTGAGCTGGAACAGTTTCTACATGACACTATC < 41bp 1 0.266322932388366 1 0.408698856830597 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962708 chr1:154962719 nonsynonymous SNV 0.998 1 32 hm5C_associated_SNPs_45255 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44064 DeepMRMD:1;iRNA_m5C:0.999536712157815 44065 chr13 115064335 115064335 1 + G T UCEC 115064352 + 115064332 115064372 41 AAAGGGAGAGGAACCAACCACAGAGAAACCAAAAGAAAGAG AAATGGAGAGGAACCAACCACAGAGAAACCAAAAGAAAGAG < 41bp 1 0.588539727430469 1 0.804012298583984 experiment 0.822920545139061 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UPF3A ENSG00000169062 CDS Human protein_coding chr13:115064352 chr13:115064335 nonsynonymous SNV 0.999 2 4 hm5C_associated_SNPs_45257 0 0 1 0 1 chromatin 1 0.500231733264565 0.391975402832032 0.999536533470871 hm5C_site_44065 DeepMRMD:0.391975402832032;iRNA_m5C:0.999536533470871 44066 chr15 74325015 74325015 1 + C T UCEC 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCGTGTCAGTGTACGCC < 41bp 1 0.276724617315114 1 0.044034332036972 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325015 nonsynonymous SNV 0.008 3 30 hm5C_associated_SNPs_45258 0 0 0 0 2 Cytosol 1 0.50023164392135 1 0.999536712157301 hm5C_site_44066 DeepMRMD:1;iRNA_m5C:0.999536712157301 44067 chr1 43917167 43917167 1 + G T UCEC 43917159 - 43917139 43917179 41 AGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTATCTGTTT AGCCCAGCAGCCACGGAGAGCTGAATTTCCCCTATCTGTTT < 41bp 1 0.633225684308745 1 0.250292956829071 experiment 0.733548631382511 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HYI ENSG00000178922 CDS Human protein_coding chr1:43917159 chr1:43917167 nonsynonymous SNV 0.995 2 13 hm5C_associated_SNPs_45259 0 0 0 0 3 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44067 DeepMRMD:1;iRNA_m5C:0.999536712157815 44068 chrX 105855846 105855846 1 + G T UCEC 105855849 + 105855829 105855869 41 CCAGGAGAAACCAGAGAGGCCTTTAAGAGGCGGGAAGAGTC CCAGGAGAAACCAGAGATGCCTTTAAGAGGCGGGAAGAGTC < 41bp 1 0.304182269261648 1 0.141299486160278 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105855849 chrX:105855846 nonsynonymous SNV 0.999 1 18 hm5C_associated_SNPs_45261 0 0 0 0 0 nucleus 1 0.500231643928392 1 0.999536712143217 hm5C_site_44068 DeepMRMD:1;iRNA_m5C:0.999536712143217 44069 chr6 34950938 34950938 1 + C A UCEC 34950926 + 34950906 34950946 41 AAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCGGG AAAAGATAACCATGGACTGACTGCCCTAGACAATGTTCGGG < 41bp 1 0.111047592335634 1 0.163932532072067 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:34950926 chr6:34950938 nonsynonymous SNV 1.000 2 33 hm5C_associated_SNPs_45263 0 0 1 0 2 Cytosol 1 0.500231643927032 1 0.999536712145935 hm5C_site_44069 DeepMRMD:1;iRNA_m5C:0.999536712145935 44070 chr1 203834171 203834171 1 + T C UCEC 203834189 + 203834169 203834209 41 GGTTTTGATGAGTATATGAACCTTGTATTAGATGATGCAGA GGCTTTGATGAGTATATGAACCTTGTATTAGATGATGCAGA < 41bp 1 0.044593175495416 1 0.0815619826316833 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SNRPE ENSG00000182004 CDS Human protein_coding chr1:203834189 chr1:203834171 synonymous SNV . 0 3 hm5C_associated_SNPs_45264 0 0 1 0 1 Ribosome 1 0.50023164391547 1 0.99953671216906 hm5C_site_44070 DeepMRMD:1;iRNA_m5C:0.99953671216906 44071 chr3 58067463 58067463 1 + A C UCEC 58067455 + 58067435 58067475 41 CCAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAAC CCAAGCTCAAGCCGGGGGCTCCTCTCAACCCCAAACTCAAC < 41bp 1 0.0159470336532165 1 0.0564540922641754 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067455 chr3:58067463 nonsynonymous SNV 1.000 5 29 hm5C_associated_SNPs_45265 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_44071 DeepMRMD:1;iRNA_m5C:0.999536712157814 44072 chr3 58067463 58067463 1 + A C UCEC 58067456 + 58067436 58067476 41 CAAGCTCAAGCCGGGGGCTCCTCTCAAACCCAAACTCAACC CAAGCTCAAGCCGGGGGCTCCTCTCAACCCCAAACTCAACC < 41bp 1 0.0559067839932157 1 0.300461113452911 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58067456 chr3:58067463 nonsynonymous SNV 1.000 5 28 hm5C_associated_SNPs_45266 0 0 1 0 1 Cytosol 1 0.500231643915067 1 0.999536712169866 hm5C_site_44072 DeepMRMD:1;iRNA_m5C:0.999536712169866 44073 chr2 169551556 169551556 1 + A T UCEC 169551536 + 169551516 169551556 41 TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAA TTATTGGTCTTTGATGTTTTCTCAGTTCACTGATATCAAAT < 41bp 1 0.474622839790991 1 0.382927626371384 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CERS6 ENSG00000172292 CDS Human protein_coding chr2:169551536 chr2:169551556 stopgain 1.000 1 41 hm5C_associated_SNPs_45267 0 0 1 0 2 Endoplasmic reticulum 1 0.500231630778686 1 0.999536738442628 hm5C_site_44073 DeepMRMD:1;iRNA_m5C:0.999536738442628 44074 chr10 118314720 118314720 1 + G A UCEC 118314708 + 118314688 118314728 41 AGGGTTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTG AGGGTTGGACCCAGCAGAACCTTGCTTTCAGGACACACCTG < 41bp 1 0.368661059694611 1 0.293784499168396 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314708 chr10:118314720 nonsynonymous SNV 0.864 1 33 hm5C_associated_SNPs_45268 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_44074 DeepMRMD:1;iRNA_m5C:0.999536712157815 44075 chr10 118314720 118314720 1 + G A UCEC 118314712 + 118314692 118314732 41 TTGGACCCAGCAGAACCTTGCTTTCAGGGCACACCTGAATT TTGGACCCAGCAGAACCTTGCTTTCAGGACACACCTGAATT < 41bp 1 0.0397072289042427 1 0.0526699125766754 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314712 chr10:118314720 nonsynonymous SNV 0.864 1 29 hm5C_associated_SNPs_45269 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_44075 DeepMRMD:1;iRNA_m5C:0.999536712157815 44076 chr10 118314720 118314720 1 + G A UCEC 118314721 + 118314701 118314741 41 GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATT GCAGAACCTTGCTTTCAGGACACACCTGAATTAGTCCGATT < 41bp 1 0.285640781590292 1 0.0373651683330536 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314721 chr10:118314720 nonsynonymous SNV 0.864 1 20 hm5C_associated_SNPs_45270 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_44076 DeepMRMD:1;iRNA_m5C:0.999536712157815 44077 chr10 118314720 118314720 1 + G A UCEC 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTGCTTTCAGGACACACCTGAATTAGTCCGATTGG < 41bp 1 0.566931545771809 1 0.0548935234546661 experiment 0.866136908456381 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314720 nonsynonymous SNV 0.864 1 18 hm5C_associated_SNPs_45271 0 0 0 0 1 unknown 1 0.500231643957671 1 0.999536712084659 hm5C_site_44077 DeepMRMD:1;iRNA_m5C:0.999536712084659 44078 chr10 118314720 118314720 1 + G A UCEC 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTGCTTTCAGGACACACCTGAATTAGTCCGATTGGAC < 41bp 1 0.243838355442865 1 0.25265908241272 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314720 nonsynonymous SNV 0.864 1 16 hm5C_associated_SNPs_45272 0 0 0 0 1 unknown 1 0.50023164392257 1 0.99953671215486 hm5C_site_44078 DeepMRMD:1;iRNA_m5C:0.99953671215486 44079 chr10 118314720 118314720 1 + G A UCEC 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGACACACCTGAATTAGTCCGATTGGACCCCAGCGATGC < 41bp 1 0.360456512602756 1 0.307020425796509 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314720 nonsynonymous SNV 0.864 1 5 hm5C_associated_SNPs_45274 0 0 0 0 1 unknown 1 0.500231643867159 1 0.999536712265681 hm5C_site_44079 DeepMRMD:1;iRNA_m5C:0.999536712265681 44080 chr10 118314720 118314720 1 + G A UCEC 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGACACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC < 41bp 1 0.228135850557317 1 0.103887349367142 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314720 nonsynonymous SNV 0.864 1 4 hm5C_associated_SNPs_45275 0 0 0 0 1 unknown 1 0.500231644312041 1 0.999536711375918 hm5C_site_44080 DeepMRMD:1;iRNA_m5C:0.999536711375918 44081 chr5 10391752 10391752 1 + G T UCEC 10391750 + 10391730 10391770 41 TGGGGGAAAACCCTGATGCCCAGGATGACCAGGCAGAAGAG TGGGGGAAAACCCTGATGCCCATGATGACCAGGCAGAAGAG < 41bp 1 0.69392848525688 1 0.376348555088043 experiment 0.612143029486241 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10391750 chr5:10391752 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_45276 0 0 1 0 1 Nucleus 1 0.500231644144165 1 0.99953671171167 hm5C_site_44081 DeepMRMD:1;iRNA_m5C:0.99953671171167 44082 chr1 26080049 26080049 1 + G T UCEC 26080043 + 26080023 26080063 41 TTCAACACCCCCACGGGAATCCCAAAGGGCGTGGTGAGCTT TTCAACACCCCCACGGGAATCCCAAATGGCGTGGTGAGCTT < 41bp 1 0.575563822864518 1 0.303464531898499 experiment 0.848872354270964 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26080043 chr1:26080049 nonsynonymous SNV 0.858 1 27 hm5C_associated_SNPs_45277 0 0 0 0 2 exosome 1 0.500230694899701 1 0.999538610200597 hm5C_site_44082 DeepMRMD:1;iRNA_m5C:0.999538610200597 44083 chr1 117626693 117626693 1 + A G UCEC 117626677 + 117626657 117626697 41 TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCCA TCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGGTCCA < 41bp 1 0.165659653800578 1 0.0783667862415314 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117626677 chr1:117626693 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_45278 0 0 1 0 1 Nucleus 1 0.500231643620327 1 0.999536712759346 hm5C_site_44083 DeepMRMD:1;iRNA_m5C:0.999536712759346 44084 chr1 231377134 231377134 1 + T C UCEC 231377115 + 231377095 231377135 41 CCAGACCCCGCCCGGGAAGGCAGCCGCACCATGGAGTCTTC CCAGACCCCGCCCGGGAAGGCAGCCGCACCATGGAGTCTCC < 41bp 1 0.67566660868597 1 0.523629307746887 experiment 0.64866678262806 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231377115 chr1:231377134 nonsynonymous SNV 0.002 0 40 hm5C_associated_SNPs_45279 0 0 1 0 1 Cytosol 1 0.500231619484872 0.952741384506226 0.999536761030255 hm5C_site_44084 DeepMRMD:0.952741384506226;iRNA_m5C:0.999536761030255 44085 chr1 161179377 161179377 1 + A G UCEC 161179358 + 161179338 161179378 41 CTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAAG CTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAGG < 41bp 1 0.265764766209023 1 0.150936752557755 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179358 chr1:161179377 nonsynonymous SNV 0.999 5 40 hm5C_associated_SNPs_45280 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44085 DeepMRMD:1;iRNA_m5C:0.999536712157815 44086 chr2 54858595 54858595 1 + C T UCEC 54858614 + 54858594 54858634 41 ACATGTTTCTGCGGCAGCGGCTGCAGGCCCTGGACACTGGA ATATGTTTCTGCGGCAGCGGCTGCAGGCCCTGGACACTGGA < 41bp 1 0.630874148032724 1 0.596440196037292 experiment 0.738251703934551 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54858614 chr2:54858595 synonymous SNV . 0 2 hm5C_associated_SNPs_45281 0 0 1 0 0 Nucleus 1 0.500231643921166 0.807119607925416 0.999536712157667 hm5C_site_44086 DeepMRMD:0.807119607925416;iRNA_m5C:0.999536712157667 44087 chr9 131296145 131296145 1 + C A UCEC 131296139 + 131296119 131296159 41 TCCACCCCAGAGTGGGGGACCTCATTCTTGCTCATCTACAT TCCACCCCAGAGTGGGGGACCTCATTATTGCTCATCTACAT < 41bp 1 0.341005069171083 1 0.0866718888282776 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GLE1 ENSG00000119392 CDS Human protein_coding chr9:131296139 chr9:131296145 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_45282 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44087 DeepMRMD:1;iRNA_m5C:0.999536712157815 44088 chr12 123880948 123880948 1 + G T UCEC 123880964 + 123880944 123880984 41 CGAAGGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGGTAGT CGAATGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGGTAGT < 41bp 1 0.322797007360654 1 0.284079313278198 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123880964 chr12:123880948 nonsynonymous SNV 1.000 5 5 hm5C_associated_SNPs_45283 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44088 DeepMRMD:1;iRNA_m5C:0.999536712157815 44089 chr20 37078064 37078064 1 + G A UCEC 37078054 + 37078034 37078074 41 CGGGCTGCCTGTGCTCTGGTCATCAATAACGCAGGGAGAGG CGGGCTGCCTGTGCTCTGGTCATCAATAACACAGGGAGAGG < 41bp 1 0.304741672223415 1 0.0530121922492981 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA60 ENSG00000199266 ncRNA_exonic Human snoRNA chr20:37078054 chr20:37078064 . . 0 31 hm5C_associated_SNPs_45285 0 0 1 0 0 unknown 1 0.500236390671157 1 0.999527218657685 hm5C_site_44089 DeepMRMD:1;iRNA_m5C:0.999527218657685 44090 chr4 103500143 103500143 1 + G A UCEC 103500160 + 103500140 103500180 41 CTGGCAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC CTGACAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC < 41bp 1 0.602338700259892 1 0.357259780168533 experiment 0.795322599480215 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103500160 chr4:103500143 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_45287 0 0 1 0 1 Ribosome 1 0.500231644106924 1 0.999536711786152 hm5C_site_44090 DeepMRMD:1;iRNA_m5C:0.999536711786152 44091 chr19 8320512 8320512 1 + G A UCEC 8320515 + 8320495 8320535 41 AGCTGTCTCTCCTGGCCGCCCAGTGTGGCCTCACGCTGCAG AGCTGTCTCTCCTGGCCACCCAGTGTGGCCTCACGCTGCAG < 41bp 1 0.60360303323127 1 0.529396176338196 experiment 0.792793933537461 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CERS4 ENSG00000090661 CDS Human protein_coding chr19:8320515 chr19:8320512 nonsynonymous SNV 0.187 0 18 hm5C_associated_SNPs_45288 0 0 1 0 2 chromatin 1 0.500207649430901 0.941207647323608 0.999584701138198 hm5C_site_44091 DeepMRMD:0.941207647323608;iRNA_m5C:0.999584701138198 44092 chr1 47838748 47838748 1 + C A UCEC 47838752 + 47838732 47838772 41 GGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAA GGGAAGGCAGATGTATATTTCGTTCTCTTTTTTGACTGTAA < 41bp 1 0.149676491345365 1 0.208801805973053 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47838752 chr1:47838748 nonsynonymous SNV 1.000 2 17 hm5C_associated_SNPs_45289 0 0 1 0 1 chromatin 1 0.500231643921086 1 0.999536712157827 hm5C_site_44092 DeepMRMD:1;iRNA_m5C:0.999536712157827 44093 chr10 35854984 35854984 1 + G A UCEC 35854964 + 35854944 35854984 41 TTTGCAGGAACGAGCTAGAGCGACAGTTTCTTGAATTGCTG TTTGCAGGAACGAGCTAGAGCGACAGTTTCTTGAATTGCTA < 41bp 1 0.61192734947329 1 0.337272375822067 experiment 0.776145301053419 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCNY ENSG00000108100 CDS Human protein_coding chr10:35854964 chr10:35854984 synonymous SNV . 0 41 hm5C_associated_SNPs_45290 0 0 1 0 1 Cytosol 1 0.500231643057565 1 0.99953671388487 hm5C_site_44093 DeepMRMD:1;iRNA_m5C:0.99953671388487 44094 chr15 52339184 52339184 1 + G A UCEC 52339181 + 52339161 52339201 41 GATAGGTGACTTTGGTCTTGCACGGATCATGGATCCTCATT GATAGGTGACTTTGGTCTTGCACAGATCATGGATCCTCATT < 41bp 1 0.623793156978293 1 0.0741875767707825 experiment 0.752413686043414 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK6 ENSG00000069956 CDS Human protein_coding chr15:52339181 chr15:52339184 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_45291 0 0 1 0 1 Ribosome 1 0.50023164357545 1 0.999536712849099 hm5C_site_44094 DeepMRMD:1;iRNA_m5C:0.999536712849099 44095 chr6 7583123 7583123 1 + G T UCEC 7583125 + 7583105 7583145 41 ATATTCCCGCAAGGAGGAGGCTATTAGGAAGATAGAATCGG ATATTCCCGCAAGGAGGATGCTATTAGGAAGATAGAATCGG < 41bp 1 0.0751580570472486 1 0.0630557239055634 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7583125 chr6:7583123 nonsynonymous SNV 0.997 1 19 hm5C_associated_SNPs_45292 0 0 1 0 0 Nucleus 1 0.500231643921396 1 0.999536712157207 hm5C_site_44095 DeepMRMD:1;iRNA_m5C:0.999536712157207 44096 chr17 4848166 4848166 1 + C T UCEC 4848182 + 4848162 4848202 41 CACCCTGCCTCAGAAAGGACCCCACTTTTGGGTTCTAGCCC CACCTTGCCTCAGAAAGGACCCCACTTTTGGGTTCTAGCCC < 41bp 1 0.0992262620349754 1 0.0759420394897461 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF167 ENSG00000108523 CDS Human protein_coding chr17:4848182 chr17:4848166 nonsynonymous SNV 0.999 1 5 hm5C_associated_SNPs_45293 0 0 0 0 0 Ribosome 1 0.50023164392105 1 0.9995367121579 hm5C_site_44096 DeepMRMD:1;iRNA_m5C:0.9995367121579 44097 chr16 29989096 29989096 1 + G A UCEC 29989079 + 29989059 29989099 41 GCCAGGCCCCACTCTCAGGGCCCCCAGGGGCCACCATGCCA GCCAGGCCCCACTCTCAGGGCCCCCAGGGGCCACCATACCA < 41bp 1 0.293572023007886 1 0.086406409740448 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989079 chr16:29989096 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45294 0 0 1 0 0 Nucleus 1 0.500231643893409 1 0.999536712213182 hm5C_site_44097 DeepMRMD:1;iRNA_m5C:0.999536712213182 44098 chr16 29989096 29989096 1 + G A UCEC 29989080 + 29989060 29989100 41 CCAGGCCCCACTCTCAGGGCCCCCAGGGGCCACCATGCCAG CCAGGCCCCACTCTCAGGGCCCCCAGGGGCCACCATACCAG < 41bp 1 0.471125259661339 1 0.30222100019455 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989080 chr16:29989096 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_45295 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44098 DeepMRMD:1;iRNA_m5C:0.999536712157815 44099 chr16 29989096 29989096 1 + G A UCEC 29989081 + 29989061 29989101 41 CAGGCCCCACTCTCAGGGCCCCCAGGGGCCACCATGCCAGC CAGGCCCCACTCTCAGGGCCCCCAGGGGCCACCATACCAGC < 41bp 1 0.428083539926508 1 0.310462355613708 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989081 chr16:29989096 nonsynonymous SNV 1.000 4 36 hm5C_associated_SNPs_45296 0 0 1 0 0 Nucleus 1 0.500231641627085 1 0.999536716745831 hm5C_site_44099 DeepMRMD:1;iRNA_m5C:0.999536716745831 44100 chr16 29989096 29989096 1 + G A UCEC 29989082 + 29989062 29989102 41 AGGCCCCACTCTCAGGGCCCCCAGGGGCCACCATGCCAGCT AGGCCCCACTCTCAGGGCCCCCAGGGGCCACCATACCAGCT < 41bp 1 0.524707819647794 1 0.660767674446106 experiment 0.950584360704412 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989082 chr16:29989096 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_45297 0 0 1 0 0 Nucleus 1 0.500231643921092 0.678464651107788 0.999536712157815 hm5C_site_44100 DeepMRMD:0.678464651107788;iRNA_m5C:0.999536712157815 44101 chr16 29989096 29989096 1 + G A UCEC 29989108 + 29989088 29989128 41 GCCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGA GCCACCATACCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGA < 41bp 1 0.493133361272845 1 0.587226808071136 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989108 chr16:29989096 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_45299 0 0 1 0 0 Nucleus 1 0.500231643055131 0.825546383857728 0.999536713889738 hm5C_site_44101 DeepMRMD:0.825546383857728;iRNA_m5C:0.999536713889738 44102 chr16 29989096 29989096 1 + G A UCEC 29989109 + 29989089 29989129 41 CCACCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGAC CCACCATACCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGAC < 41bp 1 0.439225129524553 1 0.572208166122437 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29989109 chr16:29989096 nonsynonymous SNV 1.000 4 8 hm5C_associated_SNPs_45300 0 0 1 0 0 Nucleus 1 0.500231643921092 0.855583667755126 0.999536712157815 hm5C_site_44102 DeepMRMD:0.855583667755126;iRNA_m5C:0.999536712157815 44103 chr19 5908904 5908904 1 + G A UCEC 5908886 + 5908866 5908906 41 ACCTCAGAAGCCACTGTCCACAGCCTGCAGGCCACCGTGCA ACCTCAGAAGCCACTGTCCACAGCCTGCAGGCCACCGTACA < 41bp 1 0.435047796989012 1 0.190032571554184 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control VMAC ENSG00000187650 CDS Human protein_coding chr19:5908886 chr19:5908904 synonymous SNV . 0 39 hm5C_associated_SNPs_45301 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44103 DeepMRMD:1;iRNA_m5C:0.999536712157815 44104 chr20 44038655 44038655 1 + T C UCEC 44038672 + 44038652 44038692 41 TCCTCCGACTCCTCCACCAACCTGCATAGCCCAAATCCAAG TCCCCCGACTCCTCCACCAACCTGCATAGCCCAAATCCAAG < 41bp 1 0.0992292163560978 1 0.429748505353928 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DBNDD2 ENSG00000244274 CDS Human protein_coding chr20:44038672 chr20:44038655 nonsynonymous SNV 0.529 2 4 hm5C_associated_SNPs_45302 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44104 DeepMRMD:1;iRNA_m5C:0.999536712157815 44105 chr3 186504022 186504022 1 + A G UCEC 186504005 + 186503985 186504025 41 GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCAAAT GAAGCAGATGAAATGTTGAGCCGTGGTTTTAAGGATCGAAT < 41bp 1 0.15248777527213 1 0.112883985042572 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504005 chr3:186504022 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45303 0 0 1 6 2 Nucleus 1 0.500231644483136 1 0.999536711033728 hm5C_site_44105 DeepMRMD:1;iRNA_m5C:0.999536711033728 44106 chr16 24580545 24580545 1 + A G UCEC 24580557 + 24580537 24580577 41 TAAAGGTTATGCTGCTGGAGCACAGCCTAGACCCTCAGCAA TAAAGGTTGTGCTGCTGGAGCACAGCCTAGACCCTCAGCAA < 41bp 1 0.339421533023716 1 0.363956391811371 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBBP6 ENSG00000122257 CDS Human protein_coding chr16:24580557 chr16:24580545 nonsynonymous SNV 0.985 1 9 hm5C_associated_SNPs_45304 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44106 DeepMRMD:1;iRNA_m5C:0.999536712157815 44107 chr11 65268433 65268433 1 + G A UCEC 65268439 + 65268419 65268459 41 CTGAAGCTTTTGAGGGCAGACTGCCAAGTCCTGGAGAAATA CTGAAGCTTTTGAGAGCAGACTGCCAAGTCCTGGAGAAATA < 41bp 1 0.252265789189064 1 0.0764643847942352 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MALAT1;TALAM1 ENSG00000251562 ncRNA_exonic Human lincRNA chr11:65268439 chr11:65268433 . . 0 15 hm5C_associated_SNPs_45305 0 0 1 1 0 unknown 1 0.500231643897394 1 0.999536712205211 hm5C_site_44107 DeepMRMD:1;iRNA_m5C:0.999536712205211 44108 chr17 37883745 37883745 1 + C T UCEC 37883734 + 37883714 37883754 41 TACAGCGGTACAGTGAGGACCCCACAGTACCCCTGCCCTCT TACAGCGGTACAGTGAGGACCCCACAGTACCTCTGCCCTCT < 41bp 1 0.0678491648098987 1 0.111555606126785 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37883734 chr17:37883745 synonymous SNV . 0 32 hm5C_associated_SNPs_45308 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_44108 DeepMRMD:1;iRNA_m5C:0.999536712157815 44109 chr3 178947161 178947161 1 + T G UCEC 178947150 + 178947130 178947170 41 ACTATTATGCAAATTCAGTGCAAAGGCGGCTTGAAAGGTGC ACTATTATGCAAATTCAGTGCAAAGGCGGCTGGAAAGGTGC < 41bp 1 0.430214219449897 1 0.240055680274963 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947150 chr3:178947161 nonsynonymous SNV 0.972 3 32 hm5C_associated_SNPs_45310 0 0 0 0 1 Ribosome 1 0.500231643054753 1 0.999536713890495 hm5C_site_44109 DeepMRMD:1;iRNA_m5C:0.999536713890495 44110 chr6 151671220 151671220 1 + G C UCEC 151671207 + 151671187 151671227 41 CTCCGGACAGCCAGGAGGAGCAAAAGGGCGAGAGCTCTGCC CTCCGGACAGCCAGGAGGAGCAAAAGGGCGAGACCTCTGCC < 41bp 1 0.639559947093095 1 0.767795741558075 experiment 0.720880105813809 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKAP12 ENSG00000131016 CDS Human protein_coding chr6:151671207 chr6:151671220 nonsynonymous SNV 0.367 2 34 hm5C_associated_SNPs_45311 0 0 0 0 0 Ribosome 1 0.500231643921081 0.46440851688385 0.999536712157838 hm5C_site_44110 DeepMRMD:0.46440851688385;iRNA_m5C:0.999536712157838 44111 chr1 156142782 156142782 1 + A G UCEC 156142796 + 156142776 156142816 41 CTTGTCATGTACCTGGGAACCAGTGAGTAAAGAGTTCCGGG CTTGTCGTGTACCTGGGAACCAGTGAGTAAAGAGTTCCGGG < 41bp 1 0.51179701087583 1 0.785355925559998 experiment 0.976405978248339 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142796 chr1:156142782 nonsynonymous SNV 0.995 1 7 hm5C_associated_SNPs_45312 0 0 0 0 1 exosome 1 0.500231643902577 0.429288148880004 0.999536712194846 hm5C_site_44111 DeepMRMD:0.429288148880004;iRNA_m5C:0.999536712194846 44112 chr17 16342830 16342830 1 + T C UCEC 16342848 + 16342828 16342868 41 GATACTTGTAATAGGAAGTGCCGTCAGAAGCGATAACTGAC GACACTTGTAATAGGAAGTGCCGTCAGAAGCGATAACTGAC < 41bp 1 0.0233885803062228 1 0.282485365867615 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD49B ENSG00000175061 ncRNA_exonic Human processed_transcript chr17:16342848 chr17:16342830 . . 0 3 hm5C_associated_SNPs_45313 0 0 1 0 0 unknown 1 0.500231542980179 1 0.999536914039641 hm5C_site_44112 DeepMRMD:1;iRNA_m5C:0.999536914039641 44113 chr12 51112790 51112790 1 + A G UCEC 51112772 + 51112752 51112792 41 AGAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCATG AGAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCGTG < 41bp 1 0.192757564705878 1 0.156714230775833 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51112772 chr12:51112790 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_45314 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_44113 DeepMRMD:1;iRNA_m5C:0.999536712157815 44114 chr12 51112790 51112790 1 + A G UCEC 51112773 + 51112753 51112793 41 GAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCATGT GAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCGTGT < 41bp 1 0.231752019358531 1 0.434434592723846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51112773 chr12:51112790 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45315 0 0 1 0 2 Nucleus 1 0.50023166416634 1 0.99953667166732 hm5C_site_44114 DeepMRMD:1;iRNA_m5C:0.99953667166732 44115 chr20 18142496 18142496 1 + A G UCEC 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CCATCATTGCTGTTGAGGGACTTAGAAAACGAGCAAGTCGG < 41bp 1 0.135268809160747 1 0.0626125931739807 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142496 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_45316 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44115 DeepMRMD:1;iRNA_m5C:0.999536712157815 44116 chr3 184584687 184584687 1 + T A UCEC 184584699 + 184584679 184584719 41 AAGGCTTGTTATCAATCCATCAGTAGCTATGGTGGTCAGAT AAGGCTTGATATCAATCCATCAGTAGCTATGGTGGTCAGAT < 41bp 1 0.208969959820263 1 0.356925755739212 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS8 ENSG00000156931 CDS Human protein_coding chr3:184584699 chr3:184584687 stopgain 0.998 1 9 hm5C_associated_SNPs_45317 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157815 hm5C_site_44116 DeepMRMD:1;iRNA_m5C:0.999536712157815 44117 chrX 73042371 73042371 1 + A T UCEC 73042369 - 73042349 73042389 41 AGAATATAGGAGAAAGGTTACTGTTTATTTTTTTTCATGTA AGAATATAGGAGAAAGGTAACTGTTTATTTTTTTTCATGTA < 41bp 1 0.0638669893036544 1 0.129810392856598 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042369 chrX:73042371 . . 0 19 hm5C_associated_SNPs_45318 0 0 1 0 0 unknown 1 0.500229359451506 1 0.999541281096988 hm5C_site_44117 DeepMRMD:1;iRNA_m5C:0.999541281096988 44118 chr3 128973581 128973581 1 + A G UCEC 128973582 + 128973562 128973602 41 GCGAGCCCTCTGCCAGATCACTGATGTGAGTCGTGCCGGTT GCGAGCCCTCTGCCAGATCGCTGATGTGAGTCGTGCCGGTT < 41bp 1 0.6469934977521 1 0.128329038619995 experiment 0.7060130044958 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973582 chr3:128973581 nonsynonymous SNV 0.875 4 20 hm5C_associated_SNPs_45319 0 0 1 0 2 Nucleus 1 0.500231643919293 1 0.999536712161414 hm5C_site_44118 DeepMRMD:1;iRNA_m5C:0.999536712161414 44119 chr8 98837316 98837316 1 + T C UCEC 98837312 + 98837292 98837332 41 TTGATTAGCTGTGTTTGGAACTGCTACCGATACATCAATGG TTGATTAGCTGTGTTTGGAACTGCCACCGATACATCAATGG < 41bp 1 0.178873904388168 1 0.0903472304344177 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LAPTM4B ENSG00000104341 CDS Human protein_coding chr8:98837312 chr8:98837316 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_45320 0 0 1 0 1 Ribosome 1 0.500231643921178 1 0.999536712157645 hm5C_site_44119 DeepMRMD:1;iRNA_m5C:0.999536712157645 44120 chr6 33423213 33423213 1 + G A UCEC 33423232 + 33423212 33423252 41 TGGATGCTCTTCCTGCTCATCTCCTTGTGGCCAGTGGCCTT TAGATGCTCTTCCTGCTCATCTCCTTGTGGCCAGTGGCCTT < 41bp 1 0.289791437663183 1 0.203926682472229 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZBTB9 ENSG00000213588 CDS Human protein_coding chr6:33423232 chr6:33423213 synonymous SNV . 0 2 hm5C_associated_SNPs_45321 0 0 0 0 0 chromatin 1 0.500231644436074 1 0.999536711127851 hm5C_site_44120 DeepMRMD:1;iRNA_m5C:0.999536711127851 44121 chr5 102360942 102360942 1 + C T UCEC 102360927 + 102360907 102360947 41 AACAGAAACTGATCAAAGAGCCAGGCTCGGGAGTGCCTGTT AACAGAAACTGATCAAAGAGCCAGGCTCGGGAGTGTCTGTT < 41bp 1 0.295749818323377 1 0.682207465171814 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102360927 chr5:102360942 nonsynonymous SNV 0.909 0 36 hm5C_associated_SNPs_45322 0 0 0 0 0 Ribosome 1 0.500231638944479 0.635585069656372 0.999536722111042 hm5C_site_44121 DeepMRMD:0.635585069656372;iRNA_m5C:0.999536722111042 44122 chr3 124053178 124053178 1 + T C UCEC 124053164 + 124053144 124053184 41 GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAATCCCTCA GCTGCAGCGGCCCCTGAGCCCTGGGAACTCCGAACCCCTCA < 41bp 1 0.675546518070494 1 0.891994953155518 experiment 0.648906963859013 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KALRN ENSG00000160145 CDS Human protein_coding chr3:124053164 chr3:124053178 nonsynonymous SNV 0.972 3 35 hm5C_associated_SNPs_45323 0 0 0 0 1 nucleoplasm 1 0.500231643921092 0.216010093688964 0.999536712157815 hm5C_site_44122 DeepMRMD:0.216010093688964;iRNA_m5C:0.999536712157815 44123 chr4 7533312 7533312 1 + A G UCEC 7533294 + 7533274 7533314 41 CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCACC CGTCCTACACCAAGCTCACCCTCCAGCCTGGTGTCACCGCC < 41bp 1 0.632569073053982 1 0.984843611717224 experiment 0.734861853892036 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7533294 chr4:7533312 nonsynonymous SNV 0.977 1 39 hm5C_associated_SNPs_45324 0 0 0 0 2 nucleus 1 0.500231643908503 0.030312776565552 0.999536712182994 hm5C_site_44123 DeepMRMD:0.030312776565552;iRNA_m5C:0.999536712182994 44124 chr15 63866345 63866345 1 + T C UCEC 63866342 + 63866322 63866362 41 CAGAATCTAGAAAGTTTGATCCATTCCTAGGTAAGATATAT CAGAATCTAGAAAGTTTGATCCACTCCTAGGTAAGATATAT < 41bp 1 0.0382137718500345 1 0.0851966738700867 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP3 ENSG00000140455 CDS Human protein_coding chr15:63866342 chr15:63866345 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_45325 0 0 1 4 1 Cytosol 1 0.500231644129805 1 0.99953671174039 hm5C_site_44124 DeepMRMD:1;iRNA_m5C:0.99953671174039 44125 chr5 37022456 37022456 1 + T C UCEC 37022445 + 37022425 37022465 41 GTCGATTTGTCCTTTGTCGACCTCAGCTTGCTGAACAGTAT GTCGATTTGTCCTTTGTCGACCTCAGCTTGCCGAACAGTAT < 41bp 1 0.0890926880587383 1 0.051024466753006 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIPBL ENSG00000164190 CDS Human protein_coding chr5:37022445 chr5:37022456 synonymous SNV . 0 32 hm5C_associated_SNPs_45326 0 0 1 0 1 Nucleus 1 0.50023164492125 1 0.999536710157499 hm5C_site_44125 DeepMRMD:1;iRNA_m5C:0.999536710157499 44126 chr8 144732948 144732948 1 + T C UCEC 144732951 + 144732931 144732971 41 GGGAAGGCATTCCGTCATCGCTCAGACCTTATTGAACACCA GGGAAGGCATTCCGTCACCGCTCAGACCTTATTGAACACCA < 41bp 1 0.454738278137062 1 0.272699147462845 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF623 ENSG00000183309 CDS Human protein_coding chr8:144732951 chr8:144732948 synonymous SNV . 0 18 hm5C_associated_SNPs_45327 0 0 1 0 0 cytosol 1 0.500231525119692 1 0.999536949760616 hm5C_site_44126 DeepMRMD:1;iRNA_m5C:0.999536949760616 44127 chr11 66411237 66411237 1 + T C UCEC 66411252 + 66411232 66411272 41 TATAATTACGCAGAGCAGACCCTGTCCCAGCTGCCACAAGT TATAACTACGCAGAGCAGACCCTGTCCCAGCTGCCACAAGT < 41bp 1 0.0501249800926858 1 0.0258961021900177 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66411252 chr11:66411237 synonymous SNV . 0 6 hm5C_associated_SNPs_45328 0 0 1 0 0 unknown 1 0.500231444584999 1 0.999537110830001 hm5C_site_44127 DeepMRMD:1;iRNA_m5C:0.999537110830001 44128 chr1 154207164 154207164 1 + G A UCEC 154207147 + 154207127 154207167 41 ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCGGGA ACGGAATCCAATGAGGAAGGCAAAGAAAATCGAGACCAGGA < 41bp 1 0.41822906615012 1 0.345891237258911 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207147 chr1:154207164 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_45329 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44128 DeepMRMD:1;iRNA_m5C:0.999536712157815 44129 chr19 45490640 45490640 1 + G A UCEC 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG TGATAAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG < 41bp 1 0.666407347390283 1 0.6779865026474 experiment 0.667185305219433 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490640 nonsynonymous SNV 0.164 1 5 hm5C_associated_SNPs_45330 0 0 1 0 1 Cytosol 1 0.50023164392281 0.6440269947052 0.999536712154381 hm5C_site_44129 DeepMRMD:0.6440269947052;iRNA_m5C:0.999536712154381 44130 chr19 45490658 45490658 1 + G A UCEC 45490656 + 45490636 45490676 41 TGATGAGTTGTACGAGCAGTCAGATGAGGAGCAGGACTCGG TGATGAGTTGTACGAGCAGTCAAATGAGGAGCAGGACTCGG < 41bp 1 0.538735070980465 1 0.69463574886322 experiment 0.92252985803907 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45490656 chr19:45490658 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_45331 0 0 1 0 1 Cytosol 1 0.50023164392177 0.61072850227356 0.99953671215646 hm5C_site_44130 DeepMRMD:0.61072850227356;iRNA_m5C:0.99953671215646 44131 chr17 7592189 7592189 1 + C T UCEC 7592180 + 7592160 7592200 41 AGGAGCTACGGGAGGGGGACCCAGTTTCTCTCTCCACTCCC AGGAGCTACGGGAGGGGGACCCAGTTTCTTTCTCCACTCCC < 41bp 1 0.34280201724818 1 0.254852294921875 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7592180 chr17:7592189 nonsynonymous SNV 0.004 0 30 hm5C_associated_SNPs_45332 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44131 DeepMRMD:1;iRNA_m5C:0.999536712157815 44132 chr20 18142514 18142514 1 + A G UCEC 18142508 + 18142488 18142528 41 CCATCATTACTGTTGAGGGACTTAGAAAACGAGCAAGTCGG CCATCATTACTGTTGAGGGACTTAGAGAACGAGCAAGTCGG < 41bp 1 0.102140071856127 1 0.0413108468055725 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KAT14 ENSG00000149474 CDS Human protein_coding chr20:18142508 chr20:18142514 nonsynonymous SNV 1.000 2 27 hm5C_associated_SNPs_45333 0 0 1 0 2 Nucleus 1 0.500231643921607 1 0.999536712156786 hm5C_site_44132 DeepMRMD:1;iRNA_m5C:0.999536712156786 44133 chr5 131977956 131977956 1 + C A UCEC 131977975 + 131977955 131977995 41 TCTGAATATGTGGAGAAATTCTACAGGATTAAAAAGAACAT TATGAATATGTGGAGAAATTCTACAGGATTAAAAAGAACAT < 41bp 1 0.68962342497125 1 0.720050573348999 experiment 0.6207531500575 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAD50 ENSG00000113522 CDS Human protein_coding chr5:131977975 chr5:131977956 nonsynonymous SNV 1.000 3 2 hm5C_associated_SNPs_45334 0 0 1 0 1 Cytosol 1 0.500231643921092 0.559898853302002 0.999536712157815 hm5C_site_44133 DeepMRMD:0.559898853302002;iRNA_m5C:0.999536712157815 44134 chr15 41865270 41865270 1 + G A UCEC 41865260 + 41865240 41865280 41 TTGCCTGCGGCATGGAGTACCTGAGCTCTCGGAACTTCATC TTGCCTGCGGCATGGAGTACCTGAGCTCTCAGAACTTCATC < 41bp 1 0.53275100423705 1 0.12526148557663 experiment 0.934497991525899 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865260 chr15:41865270 nonsynonymous SNV 0.999 2 31 hm5C_associated_SNPs_45335 0 0 0 0 2 Ribosome 1 0.500231441717932 1 0.999537116564135 hm5C_site_44134 DeepMRMD:1;iRNA_m5C:0.999537116564135 44135 chrX 70776896 70776896 1 + G A UCEC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTATACGCGTACCATCCAAATTAATCCT < 41bp 1 0.0943578796415775 1 0.0198173820972443 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776896 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_45336 0 0 1 0 2 Nucleus 1 0.50022714251011 1 0.99954571497978 hm5C_site_44135 DeepMRMD:1;iRNA_m5C:0.99954571497978 44136 chrX 69354614 69354614 1 + G T UCEC 69354607 + 69354587 69354627 41 GAAAATCACACTGCCAATTCCTCCATGGCTTATCCTAGTCT GAAAATCACACTGCCAATTCCTCCATGTCTTATCCTAGTCT < 41bp 1 0.661521248124234 1 0.879114985466003 experiment 0.676957503751532 Functional Loss 31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69354607 chrX:69354614 nonsynonymous SNV 0.999 0 28 hm5C_associated_SNPs_45337 0 0 1 0 1 Cytosol 1 0.500231121876247 0.241770029067994 0.999537756247506 hm5C_site_44136 DeepMRMD:0.241770029067994;iRNA_m5C:0.999537756247506 44137 chr12 98926761 98926761 1 + G T UCEC 98926754 + 98926734 98926774 41 GGGCAGTACCGAACTACAGGCAGCTAAGAAAGTACATACTT GGGCAGTACCGAACTACAGGCAGCTAATAAAGTACATACTT < 41bp 1 0.420030346508459 1 0.243809133768082 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98926754 chr12:98926761 nonsynonymous SNV 0.992 0 28 hm5C_associated_SNPs_45338 0 0 1 0 0 Ribosome 1 0.50023164392103 1 0.999536712157939 hm5C_site_44137 DeepMRMD:1;iRNA_m5C:0.999536712157939 44138 chr8 97332509 97332509 1 + A C UCEC 97332495 + 97332475 97332515 41 GTCATTGGTTTCCTGGAGGCCATTGTTTGCATAAAATTTGG GTCATTGGTTTCCTGGAGGCCATTGTTTGCATAACATTTGG < 41bp 1 0.116981284434852 1 0.0771222412586212 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97332495 chr8:97332509 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_45339 0 0 1 0 1 Ribosome 1 0.500231644869302 1 0.999536710261395 hm5C_site_44138 DeepMRMD:1;iRNA_m5C:0.999536710261395 44139 chr19 19627025 19627025 1 + C A UCEC 19627040 + 19627020 19627060 41 GGGACCGGAAGTGTGGGATACTGCGAGTATGGCGGCGTCAA GGGACAGGAAGTGTGGGATACTGCGAGTATGGCGGCGTCAA < 41bp 1 0.669965393041339 1 0.301745027303696 experiment 0.660069213917321 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19627040 chr19:19627025 nonsynonymous SNV . 0 6 hm5C_associated_SNPs_45340 0 0 1 0 0 Endoplasmic reticulum 1 0.500229529945873 1 0.999540940108254 hm5C_site_44139 DeepMRMD:1;iRNA_m5C:0.999540940108254 44140 chr12 123880945 123880945 1 + G A UCEC 123880964 + 123880944 123880984 41 CGAAGGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGGTAGT CAAAGGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGGTAGT < 41bp 1 0.343082626260412 1 0.393498599529266 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control KMT5A ENSG00000183955 CDS Human protein_coding chr12:123880964 chr12:123880945 nonsynonymous SNV 0.997 4 2 hm5C_associated_SNPs_45341 0 0 1 0 2 Cytosol 1 0.500231643833585 1 0.99953671233283 hm5C_site_44140 DeepMRMD:1;iRNA_m5C:0.99953671233283 44141 chr18 74622053 74622053 1 + C T UCEC 74622068 + 74622048 74622088 41 CTCTGCGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT CTCTGTGAGGGCACGTAGACCAGTTTGAAGAGCAGAGCCCT < 41bp 1 0.324578311731258 1 0.344461441040039 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622068 chr18:74622053 stopgain 0.343 0 6 hm5C_associated_SNPs_45342 0 0 1 0 2 Cytosol 1 0.500231643922985 1 0.999536712154031 hm5C_site_44141 DeepMRMD:1;iRNA_m5C:0.999536712154031 44142 chr9 100410445 100410445 1 + T G UCEC 100410432 + 100410412 100410452 41 GCCTCCTTTTACACCACCTCCTCACACTGAAGATTCAGTGT GCCTCCTTTTACACCACCTCCTCACACTGAAGAGTCAGTGT < 41bp 1 0.172653273077132 1 0.115703046321869 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100410432 chr9:100410445 nonsynonymous SNV 0.991 1 34 hm5C_associated_SNPs_45343 0 0 1 0 1 Nucleus 1 0.500231652047373 1 0.999536695905253 hm5C_site_44142 DeepMRMD:1;iRNA_m5C:0.999536695905253 44143 chr20 31019214 31019214 1 + C A UCEC 31019221 + 31019201 31019241 41 GCCCTGATCAACTCTCGGACCTTCCATGCCTTACCATCACA GCCCTGATCAACTATCGGACCTTCCATGCCTTACCATCACA < 41bp 1 0.0711891850823915 1 0.0743148028850555 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31019221 chr20:31019214 nonsynonymous SNV 0.997 3 14 hm5C_associated_SNPs_45344 0 0 1 0 2 Nucleus 1 0.500231643952847 1 0.999536712094307 hm5C_site_44143 DeepMRMD:1;iRNA_m5C:0.999536712094307 44144 chr21 47706928 47706928 1 + A C UCEC 47706944 + 47706924 47706964 41 CAGAAATTTGACCTGGGGATCATCTGTGTTGACAACAAGAA CAGACATTTGACCTGGGGATCATCTGTGTTGACAACAAGAA < 41bp 1 0.13735910219881 1 0.143496990203857 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control YBEY ENSG00000182362 CDS Human protein_coding chr21:47706944 chr21:47706928 nonsynonymous SNV 0.016 0 5 hm5C_associated_SNPs_45345 0 0 1 0 0 chromatin 1 0.500231643921271 1 0.999536712157458 hm5C_site_44144 DeepMRMD:1;iRNA_m5C:0.999536712157458 44145 chr22 29695805 29695805 1 + G T UCEC 29695816 + 29695796 29695836 41 TGGGAGGAAGAAGAGGAGGACGTGGAGGACCTGGAAAAATG TGGGAGGAATAAGAGGAGGACGTGGAGGACCTGGAAAAATG < 41bp 1 0.5590970743548 1 0.295433938503265 experiment 0.881805851290399 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695816 chr22:29695805 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_45346 0 0 1 0 1 Cytosol 1 0.500231643920336 1 0.999536712159328 hm5C_site_44145 DeepMRMD:1;iRNA_m5C:0.999536712159328 44146 chr22 29695805 29695805 1 + G T UCEC 29695825 + 29695805 29695845 41 GAAGAGGAGGACGTGGAGGACCTGGAAAAATGGATAAGTAA TAAGAGGAGGACGTGGAGGACCTGGAAAAATGGATAAGTAA < 41bp 1 0.302993001130738 1 0.260825932025909 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695825 chr22:29695805 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_45347 0 0 1 0 1 Cytosol 1 0.500231643905599 1 0.999536712188802 hm5C_site_44146 DeepMRMD:1;iRNA_m5C:0.999536712188802 44147 chr16 78143678 78143678 1 + T A UCEC 78143695 + 78143675 78143715 41 ATTTGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA ATTAGCCATACGGATGGGAACAAGAAACTGATGAGAACGGA < 41bp 1 0.393545459934667 1 0.38224983215332 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control WWOX ENSG00000186153 CDS Human protein_coding chr16:78143695 chr16:78143678 stopgain 0.999 1 4 hm5C_associated_SNPs_45348 0 0 1 0 2 Ribosome 1 0.50023164393536 1 0.999536712129281 hm5C_site_44147 DeepMRMD:1;iRNA_m5C:0.999536712129281 44148 chr15 44673156 44673156 1 + T G UCEC 44673143 + 44673123 44673163 41 CTAAAGCAGGCTACCAAGGACAGAGTCAGTGATTTCCATAA CTAAAGCAGGCTACCAAGGACAGAGTCAGTGATGTCCATAA < 41bp 1 0.505286758709453 1 0.372665584087372 experiment 0.989426482581095 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CASC4 ENSG00000166734 CDS Human protein_coding chr15:44673143 chr15:44673156 nonsynonymous SNV 0.998 0 34 hm5C_associated_SNPs_45349 0 0 1 0 1 Ribosome 1 0.500231644094107 1 0.999536711811786 hm5C_site_44148 DeepMRMD:1;iRNA_m5C:0.999536711811786 44149 chr1 91980456 91980456 1 + G T UCEC 91980446 + 91980426 91980466 41 AAAAAAGAAGGCTATTTCTACAAAAGTTATGAATAGTGCTG AAAAAAGAAGGCTATTTCTACAAAAGTTATTAATAGTGCTG < 41bp 1 0.636268318614683 1 0.452239722013474 experiment 0.727463362770633 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDC7 ENSG00000097046 CDS Human protein_coding chr1:91980446 chr1:91980456 nonsynonymous SNV 0.875 0 31 hm5C_associated_SNPs_45350 0 0 1 0 1 Nucleus 1 0.500231610179102 1 0.999536779641796 hm5C_site_44149 DeepMRMD:1;iRNA_m5C:0.999536779641796 44150 chr1 154233542 154233542 1 + C T UCEC 154233546 + 154233526 154233566 41 TACTATACAGGGGTCCCGGGCCTCCCCAGCACCTTCCAGTA TACTATACAGGGGTCCTGGGCCTCCCCAGCACCTTCCAGTA < 41bp 1 0.0813348294468761 1 0.0628930926322937 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154233546 chr1:154233542 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_45351 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44150 DeepMRMD:1;iRNA_m5C:0.999536712157815 44151 chr8 42927425 42927425 1 + G T UCEC 42927423 + 42927403 42927443 41 GATGCAAAGAATTATCATGCCTGGCAGCATCGACAATGGGT GATGCAAAGAATTATCATGCCTTGCAGCATCGACAATGGGT < 41bp 1 0.183819725081127 1 0.0258871912956238 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FNTA ENSG00000168522;ENSG00000254673 CDS Human other chr8:42927423 chr8:42927425 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_45352 0 0 0 1 1 Endoplasmic reticulum 1 0.500231690848973 1 0.999536618302053 hm5C_site_44151 DeepMRMD:1;iRNA_m5C:0.999536618302053 44152 chr6 4937927 4937927 1 + A T UCEC 4937916 + 4937896 4937936 41 TTGACTTTATTTATTTTATACGACGTCTGACAGATGACAGG TTGACTTTATTTATTTTATACGACGTCTGACTGATGACAGG < 41bp 1 0.422628334295252 1 0.306040227413177 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CDYL ENSG00000153046 CDS Human protein_coding chr6:4937916 chr6:4937927 synonymous SNV . 0 32 hm5C_associated_SNPs_45353 0 0 1 0 1 Cytoplasm 1 0.500231682704218 1 0.999536634591564 hm5C_site_44152 DeepMRMD:1;iRNA_m5C:0.999536634591564 44153 chr8 145169221 145169221 1 + T C UCEC 145169220 + 145169200 145169240 41 CGATCGAGGGCCTGGCCTCGCTGTTGGTGGCCCTGCTGGAG CGATCGAGGGCCTGGCCTCGCCGTTGGTGGCCCTGCTGGAG < 41bp 1 0.184805782060057 1 0.499244958162308 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control WDR97 ENSG00000179698 CDS Human protein_coding chr8:145169220 chr8:145169221 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_45354 0 0 1 0 1 chromatin 1 0.500231643920827 1 0.999536712158346 hm5C_site_44153 DeepMRMD:1;iRNA_m5C:0.999536712158346 44154 chr9 124528993 124528993 1 + C A UCEC 124528998 + 124528978 124529018 41 AAGGTCACCCAGAACCTGGCCAACTTTGCCAAGTGAGTGCC AAGGTCACCCAGAACATGGCCAACTTTGCCAAGTGAGTGCC < 41bp 1 0.1314260916987 1 0.119801968336105 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124528998 chr9:124528993 nonsynonymous SNV 0.997 4 16 hm5C_associated_SNPs_45355 0 0 0 0 1 Ribosome 1 0.50023164392079 1 0.99953671215842 hm5C_site_44154 DeepMRMD:1;iRNA_m5C:0.99953671215842 44155 chr19 52196895 52196895 1 + G A UCEC 52196899 + 52196879 52196919 41 TACTCTGAGCGCCTCCGCATCTGCCAGATGTTTGTTGGGAT TACTCTGAGCGCCTCCACATCTGCCAGATGTTTGTTGGGAT < 41bp 1 0.238226290383581 1 0.386158972978592 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPACA6 ENSG00000182310;ENSG00000273318 ncRNA_exonic Human other chr19:52196899 chr19:52196895 . . 0 17 hm5C_associated_SNPs_45356 0 0 1 1 0 chromatin 1 0.500231643621661 1 0.999536712756679 hm5C_site_44155 DeepMRMD:1;iRNA_m5C:0.999536712756679 44156 chr13 61034608 61034608 1 + G A UCEC 61034613 + 61034593 61034633 41 CACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATA CACCAAGGATGCTGCAATTACAGATGACTGATGGTCATATA < 41bp 1 0.673306734675695 1 0.719131648540497 experiment 0.65338653064861 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61034613 chr13:61034608 nonsynonymous SNV 0.994 3 16 hm5C_associated_SNPs_45357 0 0 1 0 2 Cytosol 1 0.500231748501569 0.561736702919006 0.999536502996863 hm5C_site_44156 DeepMRMD:0.561736702919006;iRNA_m5C:0.999536502996863 44157 chr18 77474852 77474852 1 + C T UCEC 77474860 + 77474840 77474880 41 CAGCAGTGAGTCCGAGGGCACGAAGTCCTCCTCCTCCGCCT CAGCAGTGAGTCTGAGGGCACGAAGTCCTCCTCCTCCGCCT < 41bp 1 0.595224099032702 1 0.29951000213623 experiment 0.809551801934595 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77474860 chr18:77474852 synonymous SNV . 0 13 hm5C_associated_SNPs_45358 0 0 1 0 0 chromatin 1 0.500231643920781 1 0.999536712158438 hm5C_site_44157 DeepMRMD:1;iRNA_m5C:0.999536712158438 44158 chr1 87208040 87208040 1 + G A UCEC 87208023 + 87208003 87208043 41 ATCACCTCTCCTTCCAACCTCAGTGACCTTAAGGAGTGTAG ATCACCTCTCCTTCCAACCTCAGTGACCTTAAGGAGTATAG < 41bp 1 0.317295717582067 1 0.191675812005997 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87208023 chr1:87208040 nonsynonymous SNV 0.933 0 38 hm5C_associated_SNPs_45359 0 0 1 0 1 Ribosome 1 0.500231643917081 1 0.999536712165838 hm5C_site_44158 DeepMRMD:1;iRNA_m5C:0.999536712165838 44159 chr15 90617495 90617495 1 + G A UCEC 90617476 + 90617456 90617496 41 AAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGT AAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCAT < 41bp 1 0.483230725780196 1 0.236161440610886 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90617476 chr15:90617495 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_45360 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44159 DeepMRMD:1;iRNA_m5C:0.999536712157815 44160 chr1 64095665 64095665 1 + T A UCEC 64095685 + 64095665 64095705 41 TGAAGAATATGCAGTTTGCCCTGACCTGAAAGTAGACCTTG AGAAGAATATGCAGTTTGCCCTGACCTGAAAGTAGACCTTG < 41bp 1 0.263454918632184 1 0.0309434831142426 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PGM1 ENSG00000079739 CDS Human protein_coding chr1:64095685 chr1:64095665 synonymous SNV . 0 1 hm5C_associated_SNPs_45361 0 0 0 0 1 Ribosome 1 0.500231635663649 1 0.999536728672701 hm5C_site_44160 DeepMRMD:1;iRNA_m5C:0.999536728672701 44161 chr7 100867114 100867114 1 + A C UCEC 100867120 + 100867100 100867140 41 TCTGGGGACCCACCAGGAGACCAGGTGAGCATGAGACCTGC TCTGGGGACCCACCCGGAGACCAGGTGAGCATGAGACCTGC < 41bp 1 0.689799834569284 1 0.567653715610504 experiment 0.620400330861431 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867120 chr7:100867114 nonsynonymous SNV 1.000 1 15 hm5C_associated_SNPs_45362 0 0 1 0 1 Cytosol 1 0.500231643921092 0.864692568778992 0.999536712157815 hm5C_site_44161 DeepMRMD:0.864692568778992;iRNA_m5C:0.999536712157815 44162 chr4 1017614 1017614 1 + G A UCEC 1017627 + 1017607 1017647 41 CGACCGCGCTTCACACAGCCCTCCAAGATGAGGCGCCGGGT CGACCGCACTTCACACAGCCCTCCAAGATGAGGCGCCGGGT < 41bp 1 0.681952910880017 1 0.951341807842255 experiment 0.636094178239966 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1017627 chr4:1017614 nonsynonymous SNV 0.721 3 8 hm5C_associated_SNPs_45364 0 0 0 0 1 Ribosome 1 0.500231658632523 0.0973163843154901 0.999536682734954 hm5C_site_44162 DeepMRMD:0.0973163843154901;iRNA_m5C:0.999536682734954 44163 chr1 22331963 22331963 1 + T C UCEC 22331944 + 22331924 22331964 41 CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTG CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGCG < 41bp 1 0.170914483314213 1 0.130253523588181 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331944 chr1:22331963 synonymous SNV . 0 40 hm5C_associated_SNPs_45366 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643853081 1 0.999536712293838 hm5C_site_44163 DeepMRMD:1;iRNA_m5C:0.999536712293838 44164 chr1 22331963 22331963 1 + T C UCEC 22331945 + 22331925 22331965 41 CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGG CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGCGG < 41bp 1 0.0721468921374328 1 0.156447529792786 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331945 chr1:22331963 synonymous SNV . 0 39 hm5C_associated_SNPs_45367 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44164 DeepMRMD:1;iRNA_m5C:0.999536712157815 44165 chr1 22331963 22331963 1 + T C UCEC 22331949 + 22331929 22331969 41 TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGAAGC TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGCGGAAGC < 41bp 1 0.540960448568681 1 0.371116459369659 experiment 0.918079102862638 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331949 chr1:22331963 synonymous SNV . 0 35 hm5C_associated_SNPs_45368 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643901417 1 0.999536712197166 hm5C_site_44165 DeepMRMD:1;iRNA_m5C:0.999536712197166 44166 chr1 22331963 22331963 1 + T C UCEC 22331969 + 22331949 22331989 41 CAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG CAGTATGAGAAAAGCGGAAGCTTCTACCACACGTGTGGCGG < 41bp 1 0.188501252735799 1 0.320574253797531 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331969 chr1:22331963 synonymous SNV . 0 15 hm5C_associated_SNPs_45369 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643566534 1 0.999536712866931 hm5C_site_44166 DeepMRMD:1;iRNA_m5C:0.999536712866931 44167 chr1 22331963 22331963 1 + T C UCEC 22331972 + 22331952 22331992 41 TATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAG TATGAGAAAAGCGGAAGCTTCTACCACACGTGTGGCGGTAG < 41bp 1 0.343560825762678 1 0.308292210102081 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331972 chr1:22331963 synonymous SNV . 0 12 hm5C_associated_SNPs_45370 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44167 DeepMRMD:1;iRNA_m5C:0.999536712157815 44168 chr1 22331963 22331963 1 + T C UCEC 22331975 + 22331955 22331995 41 GAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCT GAGAAAAGCGGAAGCTTCTACCACACGTGTGGCGGTAGCCT < 41bp 1 0.446617343842511 1 0.0789535045623779 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331975 chr1:22331963 synonymous SNV . 0 9 hm5C_associated_SNPs_45371 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44168 DeepMRMD:1;iRNA_m5C:0.999536712157815 44169 chr1 22331963 22331963 1 + T C UCEC 22331976 + 22331956 22331996 41 AGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTC AGAAAAGCGGAAGCTTCTACCACACGTGTGGCGGTAGCCTC < 41bp 1 0.617672382173975 1 0.428486764431 experiment 0.76465523565205 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331976 chr1:22331963 synonymous SNV . 0 8 hm5C_associated_SNPs_45372 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644502987 1 0.999536710994026 hm5C_site_44169 DeepMRMD:1;iRNA_m5C:0.999536710994026 44170 chr1 22331963 22331963 1 + T C UCEC 22331980 + 22331960 22332000 41 AAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG AAGCGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCG < 41bp 1 0.540507243234627 1 0.184222102165222 experiment 0.918985513530747 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331980 chr1:22331963 synonymous SNV . 0 4 hm5C_associated_SNPs_45374 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644172919 1 0.999536711654162 hm5C_site_44170 DeepMRMD:1;iRNA_m5C:0.999536711654162 44171 chr7 142459744 142459744 1 + A G UCEC 142459732 + 142459712 142459752 41 CCCCCAATACGACAGGAAGACTCTGAACAATGACATCATGT CCCCCAATACGACAGGAAGACTCTGAACAATGGCATCATGT < 41bp 1 0.522502360132992 1 0.110919535160065 experiment 0.954995279734016 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459732 chr7:142459744 nonsynonymous SNV 0.445 5 33 hm5C_associated_SNPs_45375 0 0 0 0 0 Cytosol 1 0.500231387952732 1 0.999537224094535 hm5C_site_44171 DeepMRMD:1;iRNA_m5C:0.999537224094535 44172 chr7 142459744 142459744 1 + A G UCEC 142459739 + 142459719 142459759 41 TACGACAGGAAGACTCTGAACAATGACATCATGTTAATCAA TACGACAGGAAGACTCTGAACAATGGCATCATGTTAATCAA < 41bp 1 0.540381499303536 1 0.160409271717072 experiment 0.919237001392927 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459739 chr7:142459744 nonsynonymous SNV 0.445 5 26 hm5C_associated_SNPs_45376 0 0 0 0 0 Cytosol 1 0.500231798505962 1 0.999536402988076 hm5C_site_44172 DeepMRMD:1;iRNA_m5C:0.999536402988076 44173 chr7 142459744 142459744 1 + A G UCEC 142459745 + 142459725 142459765 41 AGGAAGACTCTGAACAATGACATCATGTTAATCAAGCTCTC AGGAAGACTCTGAACAATGGCATCATGTTAATCAAGCTCTC < 41bp 1 0.558250920481464 1 0.0802784860134125 experiment 0.883498159037072 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459745 chr7:142459744 nonsynonymous SNV 0.445 5 20 hm5C_associated_SNPs_45377 0 0 0 0 0 Cytosol 1 0.500231292336067 1 0.999537415327867 hm5C_site_44173 DeepMRMD:1;iRNA_m5C:0.999537415327867 44174 chr7 142459744 142459744 1 + A G UCEC 142459748 + 142459728 142459768 41 AAGACTCTGAACAATGACATCATGTTAATCAAGCTCTCCTC AAGACTCTGAACAATGGCATCATGTTAATCAAGCTCTCCTC < 41bp 1 0.535163893707445 1 0.0370499789714813 experiment 0.92967221258511 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459748 chr7:142459744 nonsynonymous SNV 0.445 5 17 hm5C_associated_SNPs_45378 0 0 0 0 0 Cytosol 1 0.500231840003607 1 0.999536319992786 hm5C_site_44174 DeepMRMD:1;iRNA_m5C:0.999536319992786 44175 chr7 142459744 142459744 1 + A G UCEC 142459757 + 142459737 142459777 41 AACAATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGT AACAATGGCATCATGTTAATCAAGCTCTCCTCACGTGCAGT < 41bp 1 0.488060239490056 1 0.792700469493866 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459757 chr7:142459744 nonsynonymous SNV 0.445 5 8 hm5C_associated_SNPs_45379 0 0 0 0 0 Cytosol 1 0.500231643938461 0.414599061012268 0.999536712123078 hm5C_site_44175 DeepMRMD:0.414599061012268;iRNA_m5C:0.999536712123078 44176 chr7 142459744 142459744 1 + A G UCEC 142459761 + 142459741 142459781 41 ATGACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC ATGGCATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATC < 41bp 1 0.152362984626196 1 0.0432152152061462 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459761 chr7:142459744 nonsynonymous SNV 0.445 5 4 hm5C_associated_SNPs_45380 0 0 0 0 0 Cytosol 1 0.500231652477411 1 0.999536695045178 hm5C_site_44176 DeepMRMD:1;iRNA_m5C:0.999536695045178 44177 chr7 142459744 142459744 1 + A G UCEC 142459763 + 142459743 142459783 41 GACATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA GGCATCATGTTAATCAAGCTCTCCTCACGTGCAGTAATCAA < 41bp 1 0.445766028771735 1 0.309469193220139 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142459763 chr7:142459744 nonsynonymous SNV 0.445 5 2 hm5C_associated_SNPs_45381 0 0 0 0 0 Cytosol 1 0.500231643921431 1 0.999536712157137 hm5C_site_44177 DeepMRMD:1;iRNA_m5C:0.999536712157137 44178 chr12 132328579 132328579 1 + G T UCEC 132328586 + 132328566 132328606 41 CGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCA CGGCGCAGCCCGATGAGCCTCCCCTGCTGCCGGAGCCCCCA < 41bp 1 0.292825940245175 1 0.158855825662613 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328586 chr12:132328579 nonsynonymous SNV 0.340 0 14 hm5C_associated_SNPs_45382 0 0 0 0 2 Cytosol 1 0.50023164392108 1 0.999536712157839 hm5C_site_44178 DeepMRMD:1;iRNA_m5C:0.999536712157839 44179 chr12 132328579 132328579 1 + G T UCEC 132328588 + 132328568 132328608 41 GCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAGCCCCCAGA GCGCAGCCCGATGAGCCTCCCCTGCTGCCGGAGCCCCCAGA < 41bp 1 0.183456376775315 1 0.0936098396778107 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328588 chr12:132328579 nonsynonymous SNV 0.340 0 12 hm5C_associated_SNPs_45383 0 0 0 0 2 Cytosol 1 0.500231643921078 1 0.999536712157844 hm5C_site_44179 DeepMRMD:1;iRNA_m5C:0.999536712157844 44180 chr3 42700156 42700156 1 + G A UCEC 42700143 + 42700123 42700163 41 CGCCTCATTGCTGCAGATGGCTGACATCGCTGCGTCCTGCC CGCCTCATTGCTGCAGATGGCTGACATCGCTGCATCCTGCC < 41bp 1 0.310541059593104 1 0.0530897378921509 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42700143 chr3:42700156 synonymous SNV . 0 34 hm5C_associated_SNPs_45384 0 0 0 0 0 membrane 1 0.500231700985709 1 0.999536598028583 hm5C_site_44180 DeepMRMD:1;iRNA_m5C:0.999536598028583 44181 chr7 73770902 73770902 1 + C T UCEC 73770922 + 73770902 73770942 41 CGTCAGCTCTGTGGCCTCCTCCGTGGGGGGTCGGCCCAGCC TGTCAGCTCTGTGGCCTCCTCCGTGGGGGGTCGGCCCAGCC < 41bp 1 0.28356233108162 1 0.818400740623474 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73770922 chr7:73770902 synonymous SNV . 0 1 hm5C_associated_SNPs_45385 0 0 0 0 1 Ribosome 1 0.500231643921062 0.363198518753052 0.999536712157875 hm5C_site_44181 DeepMRMD:0.363198518753052;iRNA_m5C:0.999536712157875 44182 chr11 63676423 63676423 1 + G A UCEC 63676421 + 63676401 63676441 41 GAGGCCAAGCCCCGCTCCCTCCGCTTCACGTGGAGTATGAA GAGGCCAAGCCCCGCTCCCTCCACTTCACGTGGAGTATGAA < 41bp 1 0.078871680863658 1 0.247416019439697 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MARK2 ENSG00000072518 CDS Human protein_coding chr11:63676421 chr11:63676423 nonsynonymous SNV 0.875 4 23 hm5C_associated_SNPs_45386 0 0 1 0 1 Nucleus 1 0.500231643920958 1 0.999536712158084 hm5C_site_44182 DeepMRMD:1;iRNA_m5C:0.999536712158084 44183 chr3 127394848 127394848 1 + C T UCEC 127394864 + 127394844 127394884 41 TGAGCGCTGCCTCTATGGGGCACTGAGTGACCCCATCCGCC TGAGTGCTGCCTCTATGGGGCACTGAGTGACCCCATCCGCC < 41bp 1 0.402884137660139 1 0.037157267332077 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127394864 chr3:127394848 nonsynonymous SNV 0.988 5 5 hm5C_associated_SNPs_45387 0 0 0 0 1 exosome 1 0.50023164392637 1 0.99953671214726 hm5C_site_44183 DeepMRMD:1;iRNA_m5C:0.99953671214726 44184 chr17 48562211 48562211 1 + C T UCEC 48562204 + 48562184 48562224 41 TGGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACA TGGCAGCAGAGAACCCCCTCCCCTGTGTCAGGAGGATGACA < 41bp 1 0.122407987188514 1 0.283422589302063 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562204 chr17:48562211 nonsynonymous SNV 0.277 0 28 hm5C_associated_SNPs_45388 0 0 0 0 0 Ribosome 1 0.500231643923706 1 0.999536712152588 hm5C_site_44184 DeepMRMD:1;iRNA_m5C:0.999536712152588 44185 chr17 48562211 48562211 1 + C T UCEC 48562205 + 48562185 48562225 41 GGCAGCAGAGAACCCCCTCCCCTGTGCCAGGAGGATGACAA GGCAGCAGAGAACCCCCTCCCCTGTGTCAGGAGGATGACAA < 41bp 1 0.204532532584856 1 0.34600242972374 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562205 chr17:48562211 nonsynonymous SNV 0.277 0 27 hm5C_associated_SNPs_45389 0 0 0 0 0 Ribosome 1 0.500231643921073 1 0.999536712157854 hm5C_site_44185 DeepMRMD:1;iRNA_m5C:0.999536712157854 44186 chr1 151236409 151236409 1 + A C UCEC 151236410 + 151236390 151236430 41 TGACTGTGAAGTGCTGACCACACTCACCCCAGACACTGGCC TGACTGTGAAGTGCTGACCCCACTCACCCCAGACACTGGCC < 41bp 1 0.118366693282894 1 0.0996169745922089 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151236410 chr1:151236409 nonsynonymous SNV 0.997 4 20 hm5C_associated_SNPs_45390 0 0 1 0 2 Ribosome 1 0.500231645337479 1 0.999536709325043 hm5C_site_44186 DeepMRMD:1;iRNA_m5C:0.999536709325043 44187 chr17 27187487 27187487 1 + G T UCEC 27187506 + 27187486 27187526 41 AGATAGCACAGGAGGCAGGCCATGACCTCATGGACATCTTC ATATAGCACAGGAGGCAGGCCATGACCTCATGGACATCTTC < 41bp 1 0.589432312335166 1 0.0752125084400177 experiment 0.821135375329668 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27187506 chr17:27187487 nonsynonymous SNV 0.843 1 2 hm5C_associated_SNPs_45391 0 0 1 0 1 Ribosome 1 0.500231643921135 1 0.999536712157729 hm5C_site_44187 DeepMRMD:1;iRNA_m5C:0.999536712157729 44188 chr4 153802308 153802308 1 + A G UCEC 153802310 + 153802290 153802330 41 TTGGAGATGCATTTGCTGACCTGAGTTTGAAGTCACTAGAA TTGGAGATGCATTTGCTGGCCTGAGTTTGAAGTCACTAGAA < 41bp 1 0.600854893197455 1 0.591535985469818 experiment 0.79829021360509 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARFIP1 ENSG00000164144 CDS Human protein_coding chr4:153802310 chr4:153802308 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_45392 0 0 0 0 1 Cytosol 1 0.500230938318654 0.816928029060364 0.999538123362692 hm5C_site_44188 DeepMRMD:0.816928029060364;iRNA_m5C:0.999538123362692 44189 chr1 65684545 65684545 1 + G A UCEC 65684546 + 65684526 65684566 41 CTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAG CTTAAAGATCGTCTCAGCCACCGTTGGATTCACCCTCCTAG < 41bp 1 0.105020434084824 1 0.108126044273376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AK4 ENSG00000162433 CDS Human protein_coding chr1:65684546 chr1:65684545 nonsynonymous SNV 0.928 0 20 hm5C_associated_SNPs_45393 0 0 0 0 1 chromatin 1 0.500231567332003 1 0.999536865335994 hm5C_site_44189 DeepMRMD:1;iRNA_m5C:0.999536865335994 44190 chr3 23960784 23960784 1 + A G UCEC 23960787 + 23960767 23960807 41 TGAGGTTATCCTCATTGATCCATTCCATAAAGCTATCAGAA TGAGGTTATCCTCATTGGTCCATTCCATAAAGCTATCAGAA < 41bp 1 0.010783460172338 1 0.111238062381744 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23960787 chr3:23960784 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_45394 0 0 0 0 2 Cytosol 1 0.500231645172601 1 0.999536709654799 hm5C_site_44190 DeepMRMD:1;iRNA_m5C:0.999536709654799 44191 chr10 133761098 133761098 1 + C T UCEC 133761091 + 133761071 133761111 41 CTTCTCAGAAATAATTTCATCCATATCCGATGTAAAATTCA CTTCTCAGAAATAATTTCATCCATATCTGATGTAAAATTCA < 41bp 1 0.153133777277877 1 0.221312642097473 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R2D ENSG00000175470 CDS Human protein_coding chr10:133761091 chr10:133761098 synonymous SNV . 0 28 hm5C_associated_SNPs_45395 0 0 1 0 1 chromatin 1 0.500231666924257 1 0.999536666151486 hm5C_site_44191 DeepMRMD:1;iRNA_m5C:0.999536666151486 44192 chrX 40996139 40996139 1 + T G UCEC 40996126 + 40996106 40996146 41 AGTTGTCCCAAGACTGGTTTCCACTTTTAGAACTTCTTGCC AGTTGTCCCAAGACTGGTTTCCACTTTTAGAACGTCTTGCC < 41bp 1 0.133783442496302 1 0.377118170261383 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:40996126 chrX:40996139 nonsynonymous SNV 0.999 4 34 hm5C_associated_SNPs_45396 0 0 1 0 1 Nucleus 1 0.500231643783409 1 0.999536712433183 hm5C_site_44192 DeepMRMD:1;iRNA_m5C:0.999536712433183 44193 chr1 145517317 145517317 1 + G T UCEC 145517304 + 145517284 145517324 41 ATGCTTGCTCTCTTCTTGGCCATGCGCTGCAGAGGCATGGA ATGCTTGCTCTCTTCTTGGCCATGCGCTGCAGATGCATGGA < 41bp 1 0.11198349021362 1 0.292532920837402 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PEX11B ENSG00000131779 CDS Human protein_coding chr1:145517304 chr1:145517317 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_45397 0 0 1 0 2 Ribosome 1 0.500231629444572 1 0.999536741110856 hm5C_site_44193 DeepMRMD:1;iRNA_m5C:0.999536741110856 44194 chr19 12924224 12924224 1 + C T UCEC 12924210 + 12924190 12924230 41 CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTT CTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCTGTTCTT < 41bp 1 0.332137589734608 1 0.0452612638473511 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924210 chr19:12924224 nonsynonymous SNV 0.001 3 35 hm5C_associated_SNPs_45398 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44194 DeepMRMD:1;iRNA_m5C:0.999536712157815 44195 chr19 12924224 12924224 1 + C T UCEC 12924211 + 12924191 12924231 41 TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTC TACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCTGTTCTTC < 41bp 1 0.0975549303653673 1 0.0388606786727905 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924211 chr19:12924224 nonsynonymous SNV 0.001 3 34 hm5C_associated_SNPs_45399 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44195 DeepMRMD:1;iRNA_m5C:0.999536712157815 44196 chr19 12924224 12924224 1 + C T UCEC 12924232 + 12924212 12924252 41 CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACG CAAGCCCGTCCCTGTTCTTCCCACCGATATTTCCTGGAACG < 41bp 1 0.15296346225012 1 0.0705824494361877 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12924232 chr19:12924224 nonsynonymous SNV 0.001 3 13 hm5C_associated_SNPs_45400 0 0 1 0 1 Ribosome 1 0.500231643921371 1 0.999536712157258 hm5C_site_44196 DeepMRMD:1;iRNA_m5C:0.999536712157258 44197 chr3 126739157 126739157 1 + C T UCEC 126739145 + 126739125 126739165 41 ACATATGCCATGCGGGTGCTCTTTCCTGGGATCGAGGACCA ACATATGCCATGCGGGTGCTCTTTCCTGGGATTGAGGACCA < 41bp 1 0.0691010718963711 1 0.182533651590347 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126739145 chr3:126739157 synonymous SNV . 0 33 hm5C_associated_SNPs_45401 0 0 1 0 1 Ribosome 1 0.500231833287194 1 0.999536333425612 hm5C_site_44197 DeepMRMD:1;iRNA_m5C:0.999536333425612 44198 chr8 145065447 145065447 1 + C A UCEC 145065439 + 145065419 145065459 41 TCTGGGGACAACTATCCTCCCCCCAACCCTGGATATCCGGG TCTGGGGACAACTATCCTCCCCCCAACCATGGATATCCGGG < 41bp 1 0.396925928905938 1 0.170496791601181 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GRINA ENSG00000178719 CDS Human protein_coding chr8:145065439 chr8:145065447 nonsynonymous SNV 0.748 1 29 hm5C_associated_SNPs_45402 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44198 DeepMRMD:1;iRNA_m5C:0.999536712157815 44199 chr2 220500016 220500016 1 + G T UCEC 220500010 + 220499990 220500030 41 CAGCTGTTTCATGAGGCTGCCTACCAGGCAGATGACCGGCA CAGCTGTTTCATGAGGCTGCCTACCATGCAGATGACCGGCA < 41bp 1 0.10032969569473 1 0.0995874106884003 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220500010 chr2:220500016 nonsynonymous SNV 0.981 1 27 hm5C_associated_SNPs_45403 0 0 0 0 1 Cytosol 1 0.50023311282742 1 0.999533774345159 hm5C_site_44199 DeepMRMD:1;iRNA_m5C:0.999533774345159 44200 chr6 159086571 159086571 1 + C T UCEC 159086565 + 159086545 159086585 41 GGCGCCGTGTGCCGGGGCTGCAGCCACCGCGTGTGTGCCCA GGCGCCGTGTGCCGGGGCTGCAGCCATCGCGTGTGTGCCCA < 41bp 1 0.688287090344719 1 0.463417112827301 experiment 0.623425819310562 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086565 chr6:159086571 synonymous SNV . 0 27 hm5C_associated_SNPs_45404 0 0 0 0 1 exosome 1 0.500231644495575 1 0.999536711008851 hm5C_site_44200 DeepMRMD:1;iRNA_m5C:0.999536711008851 44201 chr6 26045870 26045870 1 + G A UCEC 26045888 + 26045868 26045908 41 AGGACTTCAAAACCGACCTGCGTTTCCAGAGCTCTGCGGTG AGAACTTCAAAACCGACCTGCGTTTCCAGAGCTCTGCGGTG < 41bp 1 0.0574804017038503 1 0.0678058266639709 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H3C ENSG00000196532 CDS Human other chr6:26045888 chr6:26045870 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_45405 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44201 DeepMRMD:1;iRNA_m5C:0.999536712157815 44202 chr17 78349653 78349653 1 + C T UCEC 78349659 + 78349639 78349679 41 CCCACAATGCAAGCCTCCACCCCACGCCAGAGGTGAGTAAC CCCACAATGCAAGCTTCCACCCCACGCCAGAGGTGAGTAAC < 41bp 1 0.0246435188940108 1 0.147076845169067 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78349659 chr17:78349653 nonsynonymous SNV 0.075 0 15 hm5C_associated_SNPs_45406 0 0 1 0 2 Nucleus 1 0.500231643946918 1 0.999536712106165 hm5C_site_44202 DeepMRMD:1;iRNA_m5C:0.999536712106165 44203 chr18 60645868 60645868 1 + A G UCEC 60645885 + 60645865 60645905 41 TGAACATGGTGATCAAGGATCGGCCCTCAGATGGGCTGGGC TGAGCATGGTGATCAAGGATCGGCCCTCAGATGGGCTGGGC < 41bp 1 0.266839918185009 1 0.194424450397491 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60645885 chr18:60645868 nonsynonymous SNV 0.685 0 4 hm5C_associated_SNPs_45407 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_44203 DeepMRMD:1;iRNA_m5C:0.999536712157815 44204 chr15 69747822 69747822 1 + C T UCEC 69747803 + 69747783 69747823 41 GGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACA GGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGATA < 41bp 1 0.37873107504791 1 0.494189321994781 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747803 chr15:69747822 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_45408 0 0 1 0 1 Cytosol 1 0.500231672277513 1 0.999536655444974 hm5C_site_44204 DeepMRMD:1;iRNA_m5C:0.999536655444974 44205 chr17 62223732 62223732 1 + T C UCEC 62223713 + 62223693 62223733 41 GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTG GGCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGCG < 41bp 1 0.160584520282829 1 0.170551747083664 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223713 chr17:62223732 . . 0 40 hm5C_associated_SNPs_45410 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_44205 DeepMRMD:1;iRNA_m5C:0.999536712157815 44206 chr17 62223732 62223732 1 + T C UCEC 62223714 + 62223694 62223734 41 GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGG GCGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGCGG < 41bp 1 0.341604257971956 1 0.192669093608856 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223714 chr17:62223732 . . 0 39 hm5C_associated_SNPs_45411 0 0 1 0 0 unknown 1 0.500231643922328 1 0.999536712155344 hm5C_site_44206 DeepMRMD:1;iRNA_m5C:0.999536712155344 44207 chr17 62223732 62223732 1 + T C UCEC 62223715 + 62223695 62223735 41 CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGC CGACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGCGGC < 41bp 1 0.24987500792927 1 0.179640620946884 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223715 chr17:62223732 . . 0 38 hm5C_associated_SNPs_45412 0 0 1 0 0 unknown 1 0.500231648778996 1 0.999536702442008 hm5C_site_44207 DeepMRMD:1;iRNA_m5C:0.999536702442008 44208 chr17 62223732 62223732 1 + T C UCEC 62223716 + 62223696 62223736 41 GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCG GACGCGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGCGGCG < 41bp 1 0.135514087048894 1 0.0753505229949951 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223716 chr17:62223732 . . 0 37 hm5C_associated_SNPs_45413 0 0 1 0 0 unknown 1 0.500231643960189 1 0.999536712079622 hm5C_site_44208 DeepMRMD:1;iRNA_m5C:0.999536712079622 44209 chr17 62223732 62223732 1 + T C UCEC 62223720 + 62223700 62223740 41 CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGG CGCTGTCTTTGAGCCCCCGCCGAGCTTCCTCGCGGCGCCGG < 41bp 1 0.589579646209702 1 0.705561816692352 experiment 0.820840707580596 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223720 chr17:62223732 . . 0 33 hm5C_associated_SNPs_45414 0 0 1 0 0 unknown 1 0.500231643921092 0.588876366615296 0.999536712157815 hm5C_site_44209 DeepMRMD:0.588876366615296;iRNA_m5C:0.999536712157815 44210 chr17 62223732 62223732 1 + T C UCEC 62223727 + 62223707 62223747 41 TTTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAA TTTGAGCCCCCGCCGAGCTTCCTCGCGGCGCCGGGGGTCAA < 41bp 1 0.221358322544383 1 0.149173498153687 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223727 chr17:62223732 . . 0 26 hm5C_associated_SNPs_45415 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_44210 DeepMRMD:1;iRNA_m5C:0.999536712157815 44211 chr17 62223732 62223732 1 + T C UCEC 62223728 + 62223708 62223748 41 TTGAGCCCCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAAT TTGAGCCCCCGCCGAGCTTCCTCGCGGCGCCGGGGGTCAAT < 41bp 1 0.54860515975765 1 0.205150693655014 experiment 0.902789680484699 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223728 chr17:62223732 . . 0 25 hm5C_associated_SNPs_45416 0 0 1 0 0 unknown 1 0.50023164434 1 0.99953671132 hm5C_site_44211 DeepMRMD:1;iRNA_m5C:0.99953671132 44212 chr17 62223732 62223732 1 + T C UCEC 62223735 + 62223715 62223755 41 CCCGCCGAGCTTCCTCGTGGCGCCGGGGGTCAATCTGCAGC CCCGCCGAGCTTCCTCGCGGCGCCGGGGGTCAATCTGCAGC < 41bp 1 0.577444237437735 1 0.193418473005295 experiment 0.84511152512453 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223735 chr17:62223732 . . 0 18 hm5C_associated_SNPs_45417 0 0 1 0 0 unknown 1 0.500231284005759 1 0.999537431988482 hm5C_site_44212 DeepMRMD:1;iRNA_m5C:0.999537431988482 44213 chr17 62223732 62223732 1 + T C UCEC 62223745 + 62223725 62223765 41 TTCCTCGTGGCGCCGGGGGTCAATCTGCAGCGCTAGAGCAT TTCCTCGCGGCGCCGGGGGTCAATCTGCAGCGCTAGAGCAT < 41bp 1 0.219907231941754 1 0.121196806430817 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORA50C ENSG00000266402 ncRNA_exonic Human lincRNA chr17:62223745 chr17:62223732 . . 0 8 hm5C_associated_SNPs_45418 0 0 1 0 0 unknown 1 0.5002316439211 1 0.9995367121578 hm5C_site_44213 DeepMRMD:1;iRNA_m5C:0.9995367121578 44214 chr19 7670117 7670117 1 + G A UCEC 7670120 + 7670100 7670140 41 ATGCCCCCACAGAGCACGTGCCCCCGGAGCTGTGGGAGCCC ATGCCCCCACAGAGCACATGCCCCCGGAGCTGTGGGAGCCC < 41bp 1 0.0913073162615721 1 0.0542516708374023 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7670120 chr19:7670117 nonsynonymous SNV 0.994 4 18 hm5C_associated_SNPs_45419 0 0 1 0 1 nucleus 1 0.500231643922348 1 0.999536712155305 hm5C_site_44214 DeepMRMD:1;iRNA_m5C:0.999536712155305 44215 chr19 7670117 7670117 1 + G A UCEC 7670124 + 7670104 7670144 41 CCCCACAGAGCACGTGCCCCCGGAGCTGTGGGAGCCCTTCT CCCCACAGAGCACATGCCCCCGGAGCTGTGGGAGCCCTTCT < 41bp 1 0.51305905229605 1 0.805420994758606 experiment 0.973881895407901 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7670124 chr19:7670117 nonsynonymous SNV 0.994 4 14 hm5C_associated_SNPs_45420 0 0 1 0 1 nucleus 1 0.500231643921092 0.389158010482788 0.999536712157815 hm5C_site_44215 DeepMRMD:0.389158010482788;iRNA_m5C:0.999536712157815 44216 chr9 139975208 139975208 1 + G A UCEC 139975202 + 139975182 139975222 41 CCCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCC CCCCACTGAAGAACGCAGAGCCAGCCAACAGGGACAGTCCC < 41bp 1 0.0776768220458173 1 0.680422902107239 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975202 chr9:139975208 nonsynonymous SNV 0.032 0 27 hm5C_associated_SNPs_45421 0 0 1 0 1 Ribosome 1 0.500231975188367 0.639154195785522 0.999536049623266 hm5C_site_44216 DeepMRMD:0.639154195785522;iRNA_m5C:0.999536049623266 44217 chr9 139975208 139975208 1 + G A UCEC 139975203 + 139975183 139975223 41 CCCACTGAAGAACGCAGAGCCAGCCGACAGGGACAGTCCCC CCCACTGAAGAACGCAGAGCCAGCCAACAGGGACAGTCCCC < 41bp 1 0.30252608559624 1 0.43056446313858 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139975203 chr9:139975208 nonsynonymous SNV 0.032 0 26 hm5C_associated_SNPs_45422 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44217 DeepMRMD:1;iRNA_m5C:0.999536712157815 44218 chr1 230822710 230822710 1 + T C UCEC 230822730 + 230822710 230822750 41 TCCCAAGGAGATCAAGAAACCTTTGGTAACTGGTAGCAAAG CCCCAAGGAGATCAAGAAACCTTTGGTAACTGGTAGCAAAG < 41bp 1 0.28098443110648 1 0.0886075794696808 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COG2 ENSG00000135775 CDS Human protein_coding chr1:230822730 chr1:230822710 synonymous SNV . 0 1 hm5C_associated_SNPs_45423 0 0 0 0 1 Cytosol 1 0.50023164392107 1 0.99953671215786 hm5C_site_44218 DeepMRMD:1;iRNA_m5C:0.99953671215786 44219 chr2 109347859 109347859 1 + G A UCEC 109347873 + 109347853 109347893 41 ACTGATGGAAGAGCAAAATACTGGCTTGAAAGAGCAGCCAA ACTGATAGAAGAGCAAAATACTGGCTTGAAAGAGCAGCCAA < 41bp 1 0.696940297710583 1 0.317403644323349 experiment 0.606119404578833 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347873 chr2:109347859 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_45424 0 0 1 0 1 Nucleus 1 0.500231644540502 1 0.999536710918995 hm5C_site_44219 DeepMRMD:1;iRNA_m5C:0.999536710918995 44220 chr11 473952 473952 1 + C T UCEC 473956 + 473936 473976 41 TCACACAAGCTAAAGACGGGCCATTTTCCAGACCTCATCCA TCACACAAGCTAAAGATGGGCCATTTTCCAGACCTCATCCA < 41bp 1 0.0321705154388437 1 0.0253819823265076 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:473956 chr11:473952 synonymous SNV . 0 17 hm5C_associated_SNPs_45425 0 0 0 0 2 Ribosome 1 0.500231643942468 1 0.999536712115065 hm5C_site_44220 DeepMRMD:1;iRNA_m5C:0.999536712115065 44221 chr19 52195899 52195899 1 + T C UCEC 52195882 + 52195862 52195902 41 CCTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGC CCTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTCCGC < 41bp 1 0.331826404003869 1 0.109522998332977 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195882 chr19:52195899 . . 0 38 hm5C_associated_SNPs_45426 0 0 1 0 0 unknown 1 0.500231393354914 1 0.999537213290171 hm5C_site_44221 DeepMRMD:1;iRNA_m5C:0.999537213290171 44222 chr19 52195899 52195899 1 + T C UCEC 52195883 + 52195863 52195903 41 CTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCC CTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTCCGCC < 41bp 1 0.467153937680684 1 0.340311229228973 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195883 chr19:52195899 . . 0 37 hm5C_associated_SNPs_45427 0 0 1 0 0 unknown 1 0.50023164393063 1 0.99953671213874 hm5C_site_44222 DeepMRMD:1;iRNA_m5C:0.99953671213874 44223 chr19 52195899 52195899 1 + T C UCEC 52195886 + 52195866 52195906 41 GCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCA GCACCCACCCGTAGAACCGACCTTGCGGGGCCTCCGCCGCA < 41bp 1 0.106606800140814 1 0.017713874578476 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195886 chr19:52195899 . . 0 34 hm5C_associated_SNPs_45428 0 0 1 0 0 unknown 1 0.500231643922135 1 0.999536712155731 hm5C_site_44223 DeepMRMD:1;iRNA_m5C:0.999536712155731 44224 chr19 52195899 52195899 1 + T C UCEC 52195887 + 52195867 52195907 41 CACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCAC CACCCACCCGTAGAACCGACCTTGCGGGGCCTCCGCCGCAC < 41bp 1 0.382349437920539 1 0.0753376185894012 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR99B;SPACA6P-AS ENSG00000207550;ENSG00000269959 ncRNA_exonic Human other chr19:52195887 chr19:52195899 . . 0 33 hm5C_associated_SNPs_45429 0 0 1 0 0 unknown 1 0.500231643919913 1 0.999536712160173 hm5C_site_44224 DeepMRMD:1;iRNA_m5C:0.999536712160173 44225 chr10 115485146 115485146 1 + C T UCEC 115485145 + 115485125 115485165 41 TGAAGAGGACCATACAAATGCCGCCTGCTTCGCCTGCATCC TGAAGAGGACCATACAAATGCTGCCTGCTTCGCCTGCATCC < 41bp 1 0.484121035270396 1 0.123375773429871 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CASP7 ENSG00000165806 CDS Human protein_coding chr10:115485145 chr10:115485146 synonymous SNV . 0 22 hm5C_associated_SNPs_45430 0 0 0 0 2 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_44225 DeepMRMD:1;iRNA_m5C:0.999536712157814 44226 chr12 56075819 56075819 1 + T C UCEC 56075823 + 56075803 56075843 41 CCACCGGGCTGCAGGGTCACCTGCCTAGACCCAAATCCCCA CCACCGGGCTGCAGGGCCACCTGCCTAGACCCAAATCCCCA < 41bp 1 0.414186431743438 1 0.11913588643074 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control METTL7B ENSG00000170439 CDS Human protein_coding chr12:56075823 chr12:56075819 nonsynonymous SNV 0.995 3 17 hm5C_associated_SNPs_45431 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_44226 DeepMRMD:1;iRNA_m5C:0.999536712157815 44227 chr5 176868828 176868828 1 + G A UCEC 176868832 + 176868812 176868852 41 CCAGCAGTTGGCGGTAGCAGCTACTCCGAGCGCCGTTTACA CCAGCAGTTGGCGGTAACAGCTACTCCGAGCGCCGTTTACA < 41bp 1 0.281919958810214 1 0.080486923456192 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GRK6 ENSG00000198055 CDS Human protein_coding chr5:176868832 chr5:176868828 synonymous SNV . 0 17 hm5C_associated_SNPs_45432 0 0 1 0 1 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_44227 DeepMRMD:1;iRNA_m5C:0.99953671215782 44228 chrX 133547558 133547558 1 + G T UCEC 133547561 + 133547541 133547581 41 AATGAACATGAACTGGAGCCCTCATCACCTAAAAGTAAAAA AATGAACATGAACTGGATCCCTCATCACCTAAAAGTAAAAA < 41bp 1 0.215250403726068 1 0.132240176200867 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133547561 chrX:133547558 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_45433 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44228 DeepMRMD:1;iRNA_m5C:0.999536712157815 44229 chr1 62905603 62905603 1 + G T UCEC 62905591 + 62905571 62905611 41 ACTTTCAAGAGGTAGCCCTTCAAAGAAAAACAGACTTTCCT ACTTTCAAGAGGTAGCCCTTCAAAGAAAAACATACTTTCCT < 41bp 1 0.469508316098381 1 0.277870714664459 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient USP1 ENSG00000162607 CDS Human protein_coding chr1:62905591 chr1:62905603 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_45434 0 0 1 0 0 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_44229 DeepMRMD:1;iRNA_m5C:0.999536712157813 44230 chr6 44218112 44218112 1 + G T UCEC 44218121 + 44218101 44218141 41 ATAAAGATGATGAAGAAAAACCCAAGATCGAAGATGTGGGT ATAAAGATGATTAAGAAAAACCCAAGATCGAAGATGTGGGT < 41bp 1 0.473931419888377 1 0.173278719186783 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218121 chr6:44218112 stopgain 0.959 0 12 hm5C_associated_SNPs_45435 0 0 1 0 1 Nucleus 1 0.500231643920795 1 0.99953671215841 hm5C_site_44230 DeepMRMD:1;iRNA_m5C:0.99953671215841 44231 chr8 32613923 32613923 1 + A C UCEC 32613925 + 32613905 32613945 41 CCTTTCTTATGTCCAGGAAACAGCGGAAAAAGCTGCATGAC CCTTTCTTATGTCCAGGACACAGCGGAAAAAGCTGCATGAC < 41bp 1 0.55725613789949 1 0.463322073221207 experiment 0.88548772420102 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control NRG1 ENSG00000157168 CDS Human protein_coding chr8:32613925 chr8:32613923 nonsynonymous SNV 0.967 3 19 hm5C_associated_SNPs_45436 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921018 1 0.999536712157964 hm5C_site_44231 DeepMRMD:1;iRNA_m5C:0.999536712157964 44232 chr18 77895410 77895410 1 + C T UCEC 77895411 + 77895391 77895431 41 TGCAACGAGCTCTTTCCGTCCAACGTCTACCAGGTCCACAT TGCAACGAGCTCTTTCCGTTCAACGTCTACCAGGTCCACAT < 41bp 1 0.53527095489714 1 0.336136400699615 experiment 0.929458090205721 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ADNP2 ENSG00000101544 CDS Human protein_coding chr18:77895411 chr18:77895410 nonsynonymous SNV 0.808 4 20 hm5C_associated_SNPs_45437 0 0 1 0 0 Cytosol 1 0.500231643920973 1 0.999536712158054 hm5C_site_44232 DeepMRMD:1;iRNA_m5C:0.999536712158054 44233 chr2 120125830 120125830 1 + C T UCEC 120125835 + 120125815 120125855 41 TCGGATGAGGAGATGCTGTTCATCTATGGCCACTACAAACA TCGGATGAGGAGATGTTGTTCATCTATGGCCACTACAAACA < 41bp 1 0.291760721279525 1 0.0611684024333954 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DBI ENSG00000155368 CDS Human protein_coding chr2:120125835 chr2:120125830 synonymous SNV . 0 16 hm5C_associated_SNPs_45438 0 0 1 1 2 Ribosome 1 0.500231643921073 1 0.999536712157855 hm5C_site_44233 DeepMRMD:1;iRNA_m5C:0.999536712157855 44234 chr17 79425689 79425689 1 + G A UCEC 79425696 + 79425676 79425716 41 GGCCACACGCAACGCCAAGGCCATCCTGGGGAAGGGCCGGA GGCCACACGCAACACCAAGGCCATCCTGGGGAAGGGCCGGA < 41bp 1 0.0168193110388035 1 0.0278404951095581 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BAHCC1 ENSG00000171282 CDS Human other chr17:79425696 chr17:79425689 nonsynonymous SNV 0.945 0 14 hm5C_associated_SNPs_45440 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_44234 DeepMRMD:1;iRNA_m5C:0.999536712157815 44235 chr1 151020384 151020384 1 + G A UCEC 151020375 + 151020355 151020395 41 TCCTGCTGCTGAATCTGGGTCCCCGGGCGGCGGGGGCCCAA TCCTGCTGCTGAATCTGGGTCCCCGGGCGACGGGGGCCCAA < 41bp 1 0.614432164293755 1 0.123375475406647 experiment 0.77113567141249 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020375 chr1:151020384 nonsynonymous SNV 0.992 3 30 hm5C_associated_SNPs_45441 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44235 DeepMRMD:1;iRNA_m5C:0.999536712157815 44236 chr1 151020384 151020384 1 + G A UCEC 151020391 + 151020371 151020411 41 GGGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTC GGGTCCCCGGGCGACGGGGGCCCAAGGCCTGACCCAGACTC < 41bp 1 0.600767893971416 1 0.398347228765488 experiment 0.798464212057168 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020391 chr1:151020384 nonsynonymous SNV 0.992 3 14 hm5C_associated_SNPs_45444 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44236 DeepMRMD:1;iRNA_m5C:0.999536712157815 44237 chr1 151020384 151020384 1 + G A UCEC 151020392 + 151020372 151020412 41 GGTCCCCGGGCGGCGGGGGCCCAAGGCCTGACCCAGACTCC GGTCCCCGGGCGACGGGGGCCCAAGGCCTGACCCAGACTCC < 41bp 1 0.446769212276998 1 0.540614306926727 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control C1orf56 ENSG00000143443 CDS Human protein_coding chr1:151020392 chr1:151020384 nonsynonymous SNV 0.992 3 13 hm5C_associated_SNPs_45445 0 0 1 0 0 Cytosol 1 0.500231643921975 0.918771386146546 0.999536712156049 hm5C_site_44237 DeepMRMD:0.918771386146546;iRNA_m5C:0.999536712156049 44238 chr9 131843467 131843467 1 + C G UCEC 131843453 + 131843433 131843473 41 CGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTC CGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACGCACGTC < 41bp 1 0.314325971217863 1 0.332882195711136 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131843453 chr9:131843467 synonymous SNV . 0 35 hm5C_associated_SNPs_45446 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_44238 DeepMRMD:1;iRNA_m5C:0.999536712157813 44239 chr16 89759814 89759814 1 + G A UCEC 89759823 + 89759803 89759843 41 CAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTA CAGCGGATTTCAGCCTGGCCCGGGCCTATGGTGTCCCAGTA < 41bp 1 0.569066288647091 1 0.813974380493164 experiment 0.861867422705818 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CDK10 ENSG00000185324 CDS Human protein_coding chr16:89759823 chr16:89759814 nonsynonymous SNV 0.970 5 12 hm5C_associated_SNPs_45447 0 0 1 0 2 chromatin 1 0.500231643921092 0.372051239013672 0.999536712157815 hm5C_site_44239 DeepMRMD:0.372051239013672;iRNA_m5C:0.999536712157815 44240 chr7 43840158 43840158 1 + G A UCEC 43840161 + 43840141 43840181 41 GACCTGCTGAAAGGGTCGCTCCTCTTCACAGGTCAGTGCTA GACCTGCTGAAAGGGTCACTCCTCTTCACAGGTCAGTGCTA < 41bp 1 0.162213202449903 1 0.0747706592082977 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BLVRA ENSG00000106605 CDS Human protein_coding chr7:43840161 chr7:43840158 synonymous SNV . 0 18 hm5C_associated_SNPs_45448 0 0 1 0 2 Ribosome 1 0.500231682953918 1 0.999536634092164 hm5C_site_44240 DeepMRMD:1;iRNA_m5C:0.999536634092164 44241 chr12 109547688 109547688 1 + G A UCEC 109547670 + 109547650 109547690 41 TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAAGG < 41bp 1 0.0395622226411546 1 0.0294241905212402 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547670 chr12:109547688 nonsynonymous SNV 0.993 4 39 hm5C_associated_SNPs_45449 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157817 hm5C_site_44241 DeepMRMD:1;iRNA_m5C:0.999536712157817 44242 chr15 57545636 57545636 1 + C T UCEC 57545632 + 57545612 57545652 41 CAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTC CAATTCAAACTATGGAGGATCAAGTCTTGTTGCAAGCAGTC < 41bp 1 0.275921523651633 1 0.228035926818848 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57545632 chr15:57545636 synonymous SNV . 0 25 hm5C_associated_SNPs_45450 0 0 1 0 1 Cytosol 1 0.500231063720332 1 0.999537872559335 hm5C_site_44242 DeepMRMD:1;iRNA_m5C:0.999537872559335 44243 chr11 46393142 46393142 1 + C T UCEC 46393149 + 46393129 46393169 41 GATCCTCCGCGCCCGGAGGCCCCAGGTGAGTACTGCCTGCA GATCCTCCGCGCCTGGAGGCCCCAGGTGAGTACTGCCTGCA < 41bp 1 0.279386151960989 1 0.53308093547821 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46393149 chr11:46393142 nonsynonymous SNV 0.776 4 14 hm5C_associated_SNPs_45451 0 0 0 0 1 Ribosome 1 0.500231643928021 0.93383812904358 0.999536712143958 hm5C_site_44243 DeepMRMD:0.93383812904358;iRNA_m5C:0.999536712143958 44244 chr11 46393142 46393142 1 + C T UCEC 46393150 + 46393130 46393170 41 ATCCTCCGCGCCCGGAGGCCCCAGGTGAGTACTGCCTGCAC ATCCTCCGCGCCTGGAGGCCCCAGGTGAGTACTGCCTGCAC < 41bp 1 0.446049448384832 1 0.421604424715042 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGKZ ENSG00000149091 CDS Human protein_coding chr11:46393150 chr11:46393142 nonsynonymous SNV 0.776 4 13 hm5C_associated_SNPs_45452 0 0 0 0 1 Ribosome 1 0.500231643921486 1 0.999536712157027 hm5C_site_44244 DeepMRMD:1;iRNA_m5C:0.999536712157027 44245 chr7 36438899 36438899 1 + A T UCEC 36438880 + 36438860 36438900 41 TTCTGTTGCTGTCCCGGCATCACTGCTGGGCATGAGGAGAG TTCTGTTGCTGTCCCGGCATCACTGCTGGGCATGAGGAGTG < 41bp 1 0.649919433443042 1 0.269535660743713 experiment 0.700161133113915 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36438880 chr7:36438899 nonsynonymous SNV 0.730 0 40 hm5C_associated_SNPs_45454 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_44245 DeepMRMD:1;iRNA_m5C:0.999536712157816 Red cell distribution width 44246 chr18 19371509 19371509 1 + G A UCEC 19371516 + 19371496 19371536 41 AATGGGCTGAAGCGATGCTTCCAGTAAGTATGTTTAGAATA AATGGGCTGAAGCAATGCTTCCAGTAAGTATGTTTAGAATA < 41bp 1 0.196938913594992 1 0.0458164513111115 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MIB1 ENSG00000101752 CDS Human protein_coding chr18:19371516 chr18:19371509 synonymous SNV . 0 14 hm5C_associated_SNPs_45457 0 0 1 0 1 Nucleus 1 0.500227784647129 1 0.999544430705742 hm5C_site_44246 DeepMRMD:1;iRNA_m5C:0.999544430705742 44247 chr11 35201889 35201889 1 + A G UCEC 35201875 + 35201855 35201895 41 CGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGG CGGATCCACCCCAACTCCATCTGTGCAGCAAACAGCACAGG < 41bp 1 0.380826207072202 1 0.381331831216812 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201875 chr11:35201889 nonsynonymous SNV 0.404 0 35 hm5C_associated_SNPs_45458 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44247 DeepMRMD:1;iRNA_m5C:0.999536712157815 44248 chr11 35201889 35201889 1 + A G UCEC 35201902 + 35201882 35201922 41 GCAAACAACACAGGGGTGTACATCCTCACATCCAACACCTC GCAAACAGCACAGGGGTGTACATCCTCACATCCAACACCTC < 41bp 1 0.191673292818273 1 0.117801874876022 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CD44 ENSG00000026508 CDS Human protein_coding chr11:35201902 chr11:35201889 nonsynonymous SNV 0.404 0 8 hm5C_associated_SNPs_45459 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44248 DeepMRMD:1;iRNA_m5C:0.999536712157815 44249 chr7 103006594 103006594 1 + A G UCEC 103006582 + 103006562 103006602 41 ACAAAAAAAGCCTGCCTTATCTTCTTTGATGAAATTGATGC ACAAAAAAAGCCTGCCTTATCTTCTTTGATGAGATTGATGC < 41bp 1 0.461006358421559 1 0.372030407190323 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103006582 chr7:103006594 synonymous SNV . 0 33 hm5C_associated_SNPs_45460 0 0 0 0 2 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_44249 DeepMRMD:1;iRNA_m5C:0.99953671215782 44250 chr2 223782840 223782840 1 + T C UCEC 223782831 + 223782811 223782851 41 TTAAATGAAACAGAGGTGACCAACATCATTACTAGTAAAGA TTAAATGAAACAGAGGTGACCAACATCATCACTAGTAAAGA < 41bp 1 0.540070639531444 1 0.209888935089111 experiment 0.919858720937112 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223782831 chr2:223782840 synonymous SNV . 0 30 hm5C_associated_SNPs_45461 0 0 1 0 2 Endoplasmic reticulum 1 0.500231649225626 1 0.999536701548749 hm5C_site_44250 DeepMRMD:1;iRNA_m5C:0.999536701548749 44251 chr4 110442771 110442771 1 + T C UCEC 110442772 + 110442752 110442792 41 AGAAGATCCTAATCAGAGATCAAGTACAAAGGTATTTTATG AGAAGATCCTAATCAGAGACCAAGTACAAAGGTATTTTATG < 41bp 1 0.18368335490886 1 0.595999538898468 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SEC24B ENSG00000138802 CDS Human protein_coding chr4:110442772 chr4:110442771 nonsynonymous SNV 0.993 3 20 hm5C_associated_SNPs_45462 0 0 1 0 1 Cytosol 1 0.500231643925805 0.808000922203064 0.999536712148389 hm5C_site_44251 DeepMRMD:0.808000922203064;iRNA_m5C:0.999536712148389 44252 chr19 10202244 10202244 1 + A G UCEC 10202247 + 10202227 10202267 41 CCCGCGCTGGGACCGGGACCCGGATCGCCGCAGCACCCACA CCCGCGCTGGGACCGGGGCCCGGATCGCCGCAGCACCCACA < 41bp 1 0.433789666621668 1 0.734257102012634 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10202247 chr19:10202244 nonsynonymous SNV 0.898 0 18 hm5C_associated_SNPs_45463 0 0 0 0 2 Ribosome 1 0.50023164392618 0.531485795974732 0.999536712147639 hm5C_site_44252 DeepMRMD:0.531485795974732;iRNA_m5C:0.999536712147639 44253 chr11 17316969 17316969 1 + A G UCEC 17316973 + 17316953 17316993 41 ACATAGACAAGACAAAAGTACAAAATATTCACCCTGTGGAA ACATAGACAAGACAAAGGTACAAAATATTCACCCTGTGGAA < 41bp 1 0.607920939533556 1 0.0914878845214844 experiment 0.784158120932888 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17316973 chr11:17316969 synonymous SNV . 0 17 hm5C_associated_SNPs_45465 0 0 1 1 1 Ribosome 1 0.500231643921116 1 0.999536712157768 hm5C_site_44253 DeepMRMD:1;iRNA_m5C:0.999536712157768 44254 chr20 31024481 31024481 1 + G A UCEC 31024479 + 31024459 31024499 41 AGCGCCCCAGGCCTGCGGACCCGATGCCTCTTCCTGCTGAG AGCGCCCCAGGCCTGCGGACCCAATGCCTCTTCCTGCTGAG < 41bp 1 0.0678904080394744 1 0.0849089324474335 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31024479 chr20:31024481 synonymous SNV . 0 23 hm5C_associated_SNPs_45466 0 0 1 0 0 Nucleus 1 0.500231643828691 1 0.999536712342618 hm5C_site_44254 DeepMRMD:1;iRNA_m5C:0.999536712342618 44255 chr6 33169569 33169569 1 + C A UCEC 33169566 + 33169546 33169586 41 TCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGA TCAGCAGCTCCATTTTTTGTCCTATTCCTTATCCCCGTGGA < 41bp 1 0.115368263686947 1 0.0451162755489349 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33169566 chr6:33169569 synonymous SNV . 0 24 hm5C_associated_SNPs_45467 0 0 1 0 2 Ribosome 1 0.500231643918065 1 0.99953671216387 hm5C_site_44255 DeepMRMD:1;iRNA_m5C:0.99953671216387 44256 chr13 31903708 31903708 1 + A G UCEC 31903694 + 31903674 31903714 41 CATCAAGTTCCCATATCGTTCCACAAACACTGGAACATCGA CATCAAGTTCCCATATCGTTCCACAAACACTGGAGCATCGA < 41bp 1 0.410240702997293 1 0.16580793261528 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31903694 chr13:31903708 nonsynonymous SNV 0.998 1 35 hm5C_associated_SNPs_45469 0 0 0 0 1 Ribosome 1 0.500231643922875 1 0.99953671215425 hm5C_site_44256 DeepMRMD:1;iRNA_m5C:0.99953671215425 44257 chr19 55994330 55994330 1 + C T UCEC 55994334 + 55994314 55994354 41 AGCGCGTGCACACGGGCGAGCGGCCCTTCCGCTGCCCGCTC AGCGCGTGCACACGGGTGAGCGGCCCTTCCGCTGCCCGCTC < 41bp 1 0.556171846331416 1 0.670355021953583 experiment 0.887656307337169 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF628 ENSG00000197483 CDS Human protein_coding chr19:55994334 chr19:55994330 synonymous SNV . 0 17 hm5C_associated_SNPs_45470 0 0 0 0 0 exosome 1 0.500231650224563 0.659289956092834 0.999536699550874 hm5C_site_44257 DeepMRMD:0.659289956092834;iRNA_m5C:0.999536699550874 44258 chr12 132325357 132325357 1 + A G UCEC 132325361 + 132325341 132325381 41 CACCACACCGCCGGGGACACCCACTTTGACGATGACGAGGC CACCACACCGCCGGGGGCACCCACTTTGACGATGACGAGGC < 41bp 1 0.18493460558113 1 0.270713835954666 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325361 chr12:132325357 nonsynonymous SNV 0.117 1 17 hm5C_associated_SNPs_45471 0 0 0 0 1 Cytosol 1 0.50023164392114 1 0.99953671215772 hm5C_site_44258 DeepMRMD:1;iRNA_m5C:0.99953671215772 44259 chr2 233681722 233681722 1 + G T UCEC 233681725 + 233681705 233681745 41 AAAGGCGAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGTA AAAGGCGAGAGGAAGAATAACTTGCCCGAAGGAAACAGGTA < 41bp 1 0.176835590990827 1 0.195548444986343 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681725 chr2:233681722 stopgain 0.998 1 18 hm5C_associated_SNPs_45472 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44259 DeepMRMD:1;iRNA_m5C:0.999536712157815 44260 chr2 233681722 233681722 1 + G T UCEC 233681730 + 233681710 233681750 41 CGAGAGGAAGAAGAACTTGCCCGAAGGAAACAGGTATGTAT CGAGAGGAAGAATAACTTGCCCGAAGGAAACAGGTATGTAT < 41bp 1 0.408159133523024 1 0.38801172375679 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233681730 chr2:233681722 stopgain 0.998 1 13 hm5C_associated_SNPs_45473 0 0 1 0 0 Nucleus 1 0.500235250828172 1 0.999529498343657 hm5C_site_44260 DeepMRMD:1;iRNA_m5C:0.999529498343657 44261 chr22 20079083 20079083 1 + T C UCEC 20079093 + 20079073 20079113 41 GCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGA GCAGGCGGAGCCCGAGAGGCCCATCTTGCCAGCCAATCAGA < 41bp 1 0.0585229634730683 1 0.135323762893677 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20079093 chr22:20079083 nonsynonymous SNV 0.937 2 11 hm5C_associated_SNPs_45474 0 0 1 0 1 Nucleus 1 0.50023164391851 1 0.999536712162981 hm5C_site_44261 DeepMRMD:1;iRNA_m5C:0.999536712162981 44262 chrX 57619262 57619262 1 + C T UCEC 57619252 + 57619232 57619272 41 GGCCCGGCCGCCGCCCTGGGCCCCCGCGGACCGCTGGGCTC GGCCCGGCCGCCGCCCTGGGCCCCCGCGGATCGCTGGGCTC < 41bp 1 0.393966026035301 1 0.0753535330295563 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZXDB ENSG00000198455 CDS Human protein_coding chrX:57619252 chrX:57619262 nonsynonymous SNV 0.005 0 31 hm5C_associated_SNPs_45476 0 0 0 0 0 Cytosol 1 0.500231903298348 1 0.999536193403303 hm5C_site_44262 DeepMRMD:1;iRNA_m5C:0.999536193403303 44263 chrX 57619262 57619262 1 + C T UCEC 57619254 + 57619234 57619274 41 CCCGGCCGCCGCCCTGGGCCCCCGCGGACCGCTGGGCTCCG CCCGGCCGCCGCCCTGGGCCCCCGCGGATCGCTGGGCTCCG < 41bp 1 0.669882590295157 1 0.18925929069519 experiment 0.660234819409686 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZXDB ENSG00000198455 CDS Human protein_coding chrX:57619254 chrX:57619262 nonsynonymous SNV 0.005 0 29 hm5C_associated_SNPs_45478 0 0 0 0 0 Cytosol 1 0.500231645475741 1 0.999536709048518 hm5C_site_44263 DeepMRMD:1;iRNA_m5C:0.999536709048518 44264 chr15 99673042 99673042 1 + G A UCEC 99673023 + 99673003 99673043 41 GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACGC GGAGCTCTCGGTGTGTCTGACCGTGGTTCCTGGAGAGACAC < 41bp 1 0.258047575591513 1 0.0567341148853302 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99673023 chr15:99673042 nonsynonymous SNV 0.007 0 40 hm5C_associated_SNPs_45479 0 0 1 0 1 exosome 1 0.500133078414181 1 0.999733843171637 hm5C_site_44264 DeepMRMD:1;iRNA_m5C:0.999733843171637 44265 chr1 44069434 44069434 1 + G A UCEC 44069418 + 44069398 44069438 41 CGGGCCGACGAGGCGCGGCCCAACACCATAGATTTCGGCAA CGGGCCGACGAGGCGCGGCCCAACACCATAGATTTCAGCAA < 41bp 1 0.372925878460937 1 0.070190042257309 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control PTPRF ENSG00000142949 CDS Human protein_coding chr1:44069418 chr1:44069434 nonsynonymous SNV 0.997 1 37 hm5C_associated_SNPs_45480 0 0 1 0 0 Ribosome 1 0.500233975826912 1 0.999532048346176 hm5C_site_44265 DeepMRMD:1;iRNA_m5C:0.999532048346176 44266 chr17 57725629 57725629 1 + T C UCEC 57725620 + 57725600 57725640 41 GCAAAATCGTGTGGTGGGAGCTATGCAGCTATATTCTGTAG GCAAAATCGTGTGGTGGGAGCTATGCAGCCATATTCTGTAG < 41bp 1 0.250181529503234 1 0.106591522693634 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CLTC ENSG00000141367 CDS Human protein_coding chr17:57725620 chr17:57725629 nonsynonymous SNV 0.998 4 30 hm5C_associated_SNPs_45481 0 0 1 0 1 Nucleus 1 0.500231645987568 1 0.999536708024865 hm5C_site_44266 DeepMRMD:1;iRNA_m5C:0.999536708024865 44267 chr2 15747322 15747322 1 + A G UCEC 15747340 + 15747320 15747360 41 CAAAGTTTCTCCCCAATGCTCCGAAAGCTCTCATTGTTGAA CAGAGTTTCTCCCCAATGCTCCGAAAGCTCTCATTGTTGAA < 41bp 1 0.449639919452969 1 0.0872959196567535 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15747340 chr2:15747322 nonsynonymous SNV 0.999 2 3 hm5C_associated_SNPs_45482 0 0 1 0 1 Cytosol 1 0.500231643919968 1 0.999536712160063 hm5C_site_44267 DeepMRMD:1;iRNA_m5C:0.999536712160063 44268 chr14 65009462 65009462 1 + G T UCEC 65009465 + 65009445 65009485 41 TTCAGGAGCCTCCGGGGGACCCACCATCGAAGAAGTGGACT TTCAGGAGCCTCCGGGGTACCCACCATCGAAGAAGTGGACT < 41bp 1 0.221080578884277 1 0.232390463352203 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65009465 chr14:65009462 nonsynonymous SNV 0.991 3 18 hm5C_associated_SNPs_45483 0 0 0 0 0 Cytosol 1 0.500231757662958 1 0.999536484674084 hm5C_site_44268 DeepMRMD:1;iRNA_m5C:0.999536484674084 44269 chr5 139906570 139906570 1 + G T UCEC 139906560 + 139906540 139906580 41 CTTGTCAACCAGCTACAAGACAGTGTCATTGCCATTAAGCT CTTGTCAACCAGCTACAAGACAGTGTCATTTCCATTAAGCT < 41bp 1 0.158803246165427 1 0.132165998220444 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139906560 chr5:139906570 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_45484 0 0 1 0 2 unknown 1 0.500231643929396 1 0.999536712141208 hm5C_site_44269 DeepMRMD:1;iRNA_m5C:0.999536712141208 44270 chr1 109811560 109811560 1 + C T UCEC 109811544 + 109811524 109811564 41 CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGG CAAAGGGAACTTTGCTGGGGCCAAGCTGCCCCGCTATGAGG < 41bp 1 0.0407608970431723 1 0.078225314617157 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811544 chr1:109811560 synonymous SNV . 0 37 hm5C_associated_SNPs_45485 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44270 DeepMRMD:1;iRNA_m5C:0.999536712157815 44271 chr1 109811560 109811560 1 + C T UCEC 109811552 + 109811532 109811572 41 ACTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGT ACTTTGCTGGGGCCAAGCTGCCCCGCTATGAGGCCCTGCGT < 41bp 1 0.210524186506988 1 0.0685094892978668 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811552 chr1:109811560 synonymous SNV . 0 29 hm5C_associated_SNPs_45486 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44271 DeepMRMD:1;iRNA_m5C:0.999536712157815 44272 chr1 109811560 109811560 1 + C T UCEC 109811553 + 109811533 109811573 41 CTTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTG CTTTGCTGGGGCCAAGCTGCCCCGCTATGAGGCCCTGCGTG < 41bp 1 0.238752240492542 1 0.508653223514557 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811553 chr1:109811560 synonymous SNV . 0 28 hm5C_associated_SNPs_45487 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921121 0.982693552970886 0.999536712157758 hm5C_site_44272 DeepMRMD:0.982693552970886;iRNA_m5C:0.999536712157758 44273 chr1 109811560 109811560 1 + C T UCEC 109811554 + 109811534 109811574 41 TTTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGG TTTGCTGGGGCCAAGCTGCCCCGCTATGAGGCCCTGCGTGG < 41bp 1 0.182034046268479 1 0.287102490663528 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811554 chr1:109811560 synonymous SNV . 0 27 hm5C_associated_SNPs_45488 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44273 DeepMRMD:1;iRNA_m5C:0.999536712157815 44274 chr1 109811560 109811560 1 + C T UCEC 109811555 + 109811535 109811575 41 TTGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGG TTGCTGGGGCCAAGCTGCCCCGCTATGAGGCCCTGCGTGGG < 41bp 1 0.383911841099132 1 0.830539345741272 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811555 chr1:109811560 synonymous SNV . 0 26 hm5C_associated_SNPs_45489 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921093 0.338921308517456 0.999536712157815 hm5C_site_44274 DeepMRMD:0.338921308517456;iRNA_m5C:0.999536712157815 44275 chr15 99671629 99671629 1 + G A UCEC 99671610 + 99671590 99671630 41 GTGGATGCCGATCGGTTAGACCTGGAGGAGCTGAGCAAAGA GTGGATGCCGATCGGTTAGACCTGGAGGAGCTGAGCAAAAA < 41bp 1 0.193084055777859 1 0.256970942020416 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99671610 chr15:99671629 nonsynonymous SNV 0.432 3 40 hm5C_associated_SNPs_45490 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44275 DeepMRMD:1;iRNA_m5C:0.999536712157815 44276 chr15 99671629 99671629 1 + G A UCEC 99671620 + 99671600 99671640 41 ATCGGTTAGACCTGGAGGAGCTGAGCAAAGATGAGGCCAGT ATCGGTTAGACCTGGAGGAGCTGAGCAAAAATGAGGCCAGT < 41bp 1 0.344524967654915 1 0.277167081832886 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SYNM ENSG00000182253 CDS Human protein_coding chr15:99671620 chr15:99671629 nonsynonymous SNV 0.432 3 30 hm5C_associated_SNPs_45491 0 0 1 0 0 exosome 1 0.500231656346628 1 0.999536687306745 hm5C_site_44276 DeepMRMD:1;iRNA_m5C:0.999536687306745 44277 chr7 2695742 2695742 1 + T C UCEC 2695731 + 2695711 2695751 41 GTGCGTGCCCCCCAGGACCCCCTCCTCCGCGTCCAGGAGGT GTGCGTGCCCCCCAGGACCCCCTCCTCCGCGCCCAGGAGGT < 41bp 1 0.0215433197029194 1 0.125098079442978 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695731 chr7:2695742 nonsynonymous SNV 0.991 2 32 hm5C_associated_SNPs_45492 0 0 1 0 2 Ribosome 1 0.50023339816094 1 0.999533203678119 hm5C_site_44277 DeepMRMD:1;iRNA_m5C:0.999533203678119 44278 chr7 2695742 2695742 1 + T C UCEC 2695734 + 2695714 2695754 41 CGTGCCCCCCAGGACCCCCTCCTCCGCGTCCAGGAGGTGCT CGTGCCCCCCAGGACCCCCTCCTCCGCGCCCAGGAGGTGCT < 41bp 1 0.023534040341271 1 0.239519417285919 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2695734 chr7:2695742 nonsynonymous SNV 0.991 2 29 hm5C_associated_SNPs_45493 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44278 DeepMRMD:1;iRNA_m5C:0.999536712157815 44279 chr16 67315533 67315533 1 + C T UCEC 67315518 + 67315498 67315538 41 TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTGCCTTCC TGCTGCTAGTGGGAAGCACGCTGCTGAAGGAAGTGTCTTCC < 41bp 1 0.478097113542931 1 0.173752993345261 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67315518 chr16:67315533 nonsynonymous SNV 0.096 2 36 hm5C_associated_SNPs_45494 0 0 1 0 2 Cytosol 1 0.5002316440807 1 0.999536711838601 hm5C_site_44279 DeepMRMD:1;iRNA_m5C:0.999536711838601 44280 chr11 33078735 33078735 1 + C T UCEC 33078749 + 33078729 33078769 41 AAGATCCCCCAGCATATGACCATGCTATCAAACTTGTAGGA AAGATCTCCCAGCATATGACCATGCTATCAAACTTGTAGGA < 41bp 1 0.299430627333247 1 0.439190208911896 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33078749 chr11:33078735 nonsynonymous SNV 0.955 4 7 hm5C_associated_SNPs_45495 0 0 1 0 2 Ribosome 1 0.500231643492848 1 0.999536713014304 hm5C_site_44280 DeepMRMD:1;iRNA_m5C:0.999536713014304 44281 chr11 71209473 71209473 1 + T C UCEC 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GCGCACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT < 41bp 1 0.190558388180611 1 0.326978027820587 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209473 nonsynonymous SNV 0.073 4 4 hm5C_associated_SNPs_45496 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44281 DeepMRMD:1;iRNA_m5C:0.999536712157815 44282 chr12 109547663 109547663 1 + T C UCEC 109547670 + 109547650 109547690 41 TACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGG TACAGACGGCTCACCCCTCCCCTTTGTCAGTGTATAGAGGG < 41bp 1 0.044882532600847 1 0.0436437726020813 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UNG ENSG00000076248 CDS Human protein_coding chr12:109547670 chr12:109547663 synonymous SNV . 0 14 hm5C_associated_SNPs_45497 0 0 1 0 1 Ribosome 1 0.50023164391966 1 0.999536712160679 hm5C_site_44282 DeepMRMD:1;iRNA_m5C:0.999536712160679 44283 chr9 131010990 131010990 1 + G T UCEC 131010994 + 131010974 131011014 41 TCAACAAGACCGTGAGGGACCTCATGCCCAAGACCATCATG TCAACAAGACCGTGAGTGACCTCATGCCCAAGACCATCATG < 41bp 1 0.472142104616099 1 0.155211210250854 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNM1 ENSG00000106976 CDS Human protein_coding chr9:131010994 chr9:131010990 nonsynonymous SNV 0.988 4 17 hm5C_associated_SNPs_45498 0 0 1 0 1 Endoplasmic reticulum 1 0.500231658785966 1 0.999536682428068 hm5C_site_44283 DeepMRMD:1;iRNA_m5C:0.999536682428068 44284 chr15 22969317 22969317 1 + A G UCEC 22969313 + 22969293 22969333 41 CCCTGCACGTCTTCTGGGAGCTCAACTATGACTTCCTGCCC CCCTGCACGTCTTCTGGGAGCTCAGCTATGACTTCCTGCCC < 41bp 1 0.49682068583817 1 0.0721945762634277 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22969313 chr15:22969317 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_45499 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44284 DeepMRMD:1;iRNA_m5C:0.999536712157815 44285 chrX 73047062 73047062 1 + C A UCEC 73047047 - 73047027 73047067 41 TCAGAGCAAGCATTGTGGAGCGGTTCCTTATGCCAGGCTGC TCAGATCAAGCATTGTGGAGCGGTTCCTTATGCCAGGCTGC < 41bp 1 0.0926678293024499 1 0.0814279913902283 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047047 chrX:73047062 . . 0 6 hm5C_associated_SNPs_45500 0 0 1 2 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_44285 DeepMRMD:1;iRNA_m5C:0.999536712157815 44286 chrX 73047062 73047062 1 + C A UCEC 73047076 - 73047056 73047096 41 CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCA CCTGCCTGATAGGTGCAGAACGTCGGCTATCAGATCAAGCA < 41bp 1 0.296743049347251 1 0.118366181850433 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73047076 chrX:73047062 . . 0 35 hm5C_associated_SNPs_45501 0 0 1 2 0 unknown 1 0.500231644186576 1 0.999536711626849 hm5C_site_44286 DeepMRMD:1;iRNA_m5C:0.999536711626849 44287 chr10 17275846 17275846 1 + G A UCEC 17275853 + 17275833 17275873 41 AGCCTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAA AGCCTGACCTCACAGCTGCCCTGCGTGACGTACGTCAGCAA < 41bp 1 0.587968385372365 1 0.752772450447083 experiment 0.824063229255271 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275853 chr10:17275846 synonymous SNV . 0 14 hm5C_associated_SNPs_45502 0 0 1 0 2 Ribosome 1 0.500231593285261 0.494455099105834 0.999536813429478 hm5C_site_44287 DeepMRMD:0.494455099105834;iRNA_m5C:0.999536813429478 44288 chr10 17275846 17275846 1 + G A UCEC 17275856 + 17275836 17275876 41 CTGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAATAT CTGACCTCACAGCTGCCCTGCGTGACGTACGTCAGCAATAT < 41bp 1 0.377014828985366 1 0.131976336240768 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275856 chr10:17275846 synonymous SNV . 0 11 hm5C_associated_SNPs_45503 0 0 1 0 2 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_44288 DeepMRMD:1;iRNA_m5C:0.999536712157812 44289 chr10 17275846 17275846 1 + G A UCEC 17275861 + 17275841 17275881 41 CTCACGGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG CTCACAGCTGCCCTGCGTGACGTACGTCAGCAATATGAAAG < 41bp 1 0.113726291042147 1 0.0312120318412781 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control VIM ENSG00000026025 CDS Human protein_coding chr10:17275861 chr10:17275846 synonymous SNV . 0 6 hm5C_associated_SNPs_45504 0 0 1 0 2 Ribosome 1 0.500231684972539 1 0.999536630054922 hm5C_site_44289 DeepMRMD:1;iRNA_m5C:0.999536630054922 44290 chr7 101837158 101837158 1 + C T UCEC 101837147 + 101837127 101837167 41 TGAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACA TGAAGTCCATGGAGTTTGCACCGTCCGAGGGTGCTGGGACA < 41bp 1 0.0215941579869932 1 0.248377650976181 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837147 chr7:101837158 synonymous SNV . 0 32 hm5C_associated_SNPs_45505 0 0 1 0 2 Exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44290 DeepMRMD:1;iRNA_m5C:0.999536712157815 44291 chr7 101837158 101837158 1 + C T UCEC 101837148 + 101837128 101837168 41 GAAGTCCATGGAGTTTGCACCGTCCGAGGGCGCTGGGACAC GAAGTCCATGGAGTTTGCACCGTCCGAGGGTGCTGGGACAC < 41bp 1 0.067721448764793 1 0.338296383619308 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101837148 chr7:101837158 synonymous SNV . 0 31 hm5C_associated_SNPs_45506 0 0 1 0 2 Exosome 1 0.500231686628394 1 0.999536626743213 hm5C_site_44291 DeepMRMD:1;iRNA_m5C:0.999536626743213 44292 chr11 120957754 120957754 1 + C A UCEC 120957753 + 120957733 120957773 41 CAGCTCTCGGGCATTGCATTCCTTTGGCATTAGGGATGGAG CAGCTCTCGGGCATTGCATTCATTTGGCATTAGGGATGGAG < 41bp 1 0.0812974248890857 1 0.0635031163692474 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TBCEL ENSG00000154114 CDS Human protein_coding chr11:120957753 chr11:120957754 synonymous SNV . 0 22 hm5C_associated_SNPs_45509 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44292 DeepMRMD:1;iRNA_m5C:0.999536712157815 44293 chr4 79301015 79301015 1 + T C UCEC 79301019 + 79300999 79301039 41 CTCCTATTTCATGTTGTGAGCACTCCCACCAATGGTCAGCT CTCCTATTTCATGTTGCGAGCACTCCCACCAATGGTCAGCT < 41bp 1 0.0191896401414173 1 0.0559141635894775 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FRAS1 ENSG00000138759 CDS Human protein_coding chr4:79301019 chr4:79301015 nonsynonymous SNV 0.881 0 17 hm5C_associated_SNPs_45510 0 0 0 0 0 Nucleus 1 0.500231643921051 1 0.999536712157898 hm5C_site_44293 DeepMRMD:1;iRNA_m5C:0.999536712157898 44294 chr1 183519949 183519949 1 + C A UCEC 183519963 + 183519943 183519983 41 GCTCTCCTCCAACACACAACCATAATTCTGTTCCATTCTCC GCTCTCATCCAACACACAACCATAATTCTGTTCCATTCTCC < 41bp 1 0.413469040178673 1 0.119739234447479 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SMG7 ENSG00000116698 CDS Human protein_coding chr1:183519963 chr1:183519949 nonsynonymous SNV 0.999 4 7 hm5C_associated_SNPs_45512 0 0 1 0 1 Cytosol 1 0.500231643955394 1 0.999536712089212 hm5C_site_44294 DeepMRMD:1;iRNA_m5C:0.999536712089212 44295 chr5 167913517 167913517 1 + T C UCEC 167913509 + 167913489 167913529 41 GACGCTGATGGGAGGATGGACGTACTGGTGTCTGAGTGCTC GACGCTGATGGGAGGATGGACGTACTGGCGTCTGAGTGCTC < 41bp 1 0.284710151544081 1 0.133242458105087 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RARS ENSG00000113643 CDS Human protein_coding chr5:167913509 chr5:167913517 nonsynonymous SNV 0.589 1 29 hm5C_associated_SNPs_45513 0 0 1 0 1 Nucleus 1 0.500230663477647 1 0.999538673044705 hm5C_site_44295 DeepMRMD:1;iRNA_m5C:0.999538673044705 44296 chr1 43911916 43911916 1 + G A UCEC 43911903 + 43911883 43911923 41 CAGCGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGC CAGCGGGCACTGCCTGGGGGCATCATCCTCATGAAACTGGC < 41bp 1 0.0908850782575728 1 0.113065212965012 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911903 chr1:43911916 nonsynonymous SNV 0.991 4 34 hm5C_associated_SNPs_45514 0 0 1 0 2 Cytosol 1 0.500231643929036 1 0.999536712141929 hm5C_site_44296 DeepMRMD:1;iRNA_m5C:0.999536712141929 44297 chr1 43911916 43911916 1 + G A UCEC 43911906 + 43911886 43911926 41 CGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATT CGGGCACTGCCTGGGGGCATCATCCTCATGAAACTGGCATT < 41bp 1 0.0536336142586362 1 0.108226090669632 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911906 chr1:43911916 nonsynonymous SNV 0.991 4 31 hm5C_associated_SNPs_45515 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44297 DeepMRMD:1;iRNA_m5C:0.999536712157815 44298 chr1 43911916 43911916 1 + G A UCEC 43911909 + 43911889 43911929 41 GCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCA GCACTGCCTGGGGGCATCATCCTCATGAAACTGGCATTCCA < 41bp 1 0.194551367509261 1 0.104591846466064 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911909 chr1:43911916 nonsynonymous SNV 0.991 4 28 hm5C_associated_SNPs_45516 0 0 1 0 2 Cytosol 1 0.500231643808382 1 0.999536712383236 hm5C_site_44298 DeepMRMD:1;iRNA_m5C:0.999536712383236 44299 chr1 43911916 43911916 1 + G A UCEC 43911910 + 43911890 43911930 41 CACTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCAG CACTGCCTGGGGGCATCATCCTCATGAAACTGGCATTCCAG < 41bp 1 0.245400439962834 1 0.337716966867447 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911910 chr1:43911916 nonsynonymous SNV 0.991 4 27 hm5C_associated_SNPs_45517 0 0 1 0 2 Cytosol 1 0.500231643921124 1 0.999536712157752 hm5C_site_44299 DeepMRMD:1;iRNA_m5C:0.999536712157752 44300 chr1 43911916 43911916 1 + G A UCEC 43911912 + 43911892 43911932 41 CTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCAGGT CTGCCTGGGGGCATCATCCTCATGAAACTGGCATTCCAGGT < 41bp 1 0.378873008542003 1 0.700985312461853 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43911912 chr1:43911916 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_45518 0 0 1 0 2 Cytosol 1 0.500231643631661 0.598029375076294 0.999536712736679 hm5C_site_44300 DeepMRMD:0.598029375076294;iRNA_m5C:0.999536712736679 44301 chr20 49576169 49576169 1 + G A UCEC 49576184 + 49576164 49576204 41 AAATCGCTGCGGGTCTGGGCCCCTCTTACAGTGGCAGCTTG AAATCACTGCGGGTCTGGGCCCCTCTTACAGTGGCAGCTTG < 41bp 1 0.141767086741918 1 0.104075163602829 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MOCS3 ENSG00000124217 CDS Human protein_coding chr20:49576184 chr20:49576169 nonsynonymous SNV 0.611 1 6 hm5C_associated_SNPs_45519 0 0 1 0 0 Nucleus 1 0.50023164412876 1 0.99953671174248 hm5C_site_44301 DeepMRMD:1;iRNA_m5C:0.99953671174248 44302 chr15 29346717 29346717 1 + C T UCEC 29346702 + 29346682 29346722 41 GAGGAGGCCAACGGGAACACCGGCGCCTCCCCCTACCGCCT GAGGAGGCCAACGGGAACACCGGCGCCTCCCCCTATCGCCT < 41bp 1 0.680786130812126 1 0.589784920215607 experiment 0.638427738375747 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control APBA2 ENSG00000034053 CDS Human protein_coding chr15:29346702 chr15:29346717 synonymous SNV . 0 36 hm5C_associated_SNPs_45521 0 0 1 0 0 Cytosol 1 0.500231646083921 0.820430159568786 0.999536707832158 hm5C_site_44302 DeepMRMD:0.820430159568786;iRNA_m5C:0.999536707832158 44303 chr5 175933874 175933874 1 + C T UCEC 175933855 + 175933835 175933875 41 CCCAGGCGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGCC CCCAGGCGAGTGCTGCCCTGCATCCCTTCAGAGGAGTGGTC < 41bp 1 0.116998547360672 1 0.100635349750519 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FAF2 ENSG00000113194 CDS Human protein_coding chr5:175933855 chr5:175933874 nonsynonymous SNV 0.998 1 40 hm5C_associated_SNPs_45522 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44303 DeepMRMD:1;iRNA_m5C:0.999536712157815 44304 chr4 1017643 1017643 1 + C T UCEC 1017627 + 1017607 1017647 41 CGACCGCGCTTCACACAGCCCTCCAAGATGAGGCGCCGGGT CGACCGCGCTTCACACAGCCCTCCAAGATGAGGCGCTGGGT < 41bp 1 0.673183122943949 1 0.938007354736328 experiment 0.653633754112101 Functional Loss 31061524;GSE122266;BS-seq with improved protocol;Liver;Control FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1017627 chr4:1017643 nonsynonymous SNV 0.995 4 37 hm5C_associated_SNPs_45523 0 0 1 0 1 Ribosome 1 0.500176473143668 0.123985290527344 0.999647053712663 hm5C_site_44304 DeepMRMD:0.123985290527344;iRNA_m5C:0.999647053712663 44305 chr19 58797547 58797547 1 + G T UCEC 58797552 + 58797532 58797572 41 TGGGTGGCTGAGAGAGGAACCACCCAGGGCTGCCATCCAGG TGGGTGGCTGAGAGATGAACCACCCAGGGCTGCCATCCAGG < 41bp 1 0.406406817930089 1 0.104569435119629 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF8 ENSG00000083842;ENSG00000273439 CDS Human other chr19:58797552 chr19:58797547 stopgain 0.092 0 16 hm5C_associated_SNPs_45524 0 0 1 0 2 chromatin 1 0.500231643921093 1 0.999536712157814 hm5C_site_44305 DeepMRMD:1;iRNA_m5C:0.999536712157814 44306 chr2 26987227 26987227 1 + A G UCEC 26987239 + 26987219 26987259 41 TGGCCTGGACCAAGTACCAGCTGTTCCTGGCCGGGCTCATG TGGCCTGGGCCAAGTACCAGCTGTTCCTGGCCGGGCTCATG < 41bp 1 0.19383360187873 1 0.200738191604614 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC35F6 ENSG00000213699 CDS Human protein_coding chr2:26987239 chr2:26987227 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_45525 0 0 1 0 1 Ribosome 1 0.500231643920628 1 0.999536712158744 hm5C_site_44306 DeepMRMD:1;iRNA_m5C:0.999536712158744 44307 chr10 75551724 75551724 1 + G A UCEC 75551705 + 75551685 75551725 41 AACACAAGAAGACGCTGGAGCGGCTCTTCCCCGGCTTCCGG AACACAAGAAGACGCTGGAGCGGCTCTTCCCCGGCTTCCAG < 41bp 1 0.43708626736165 1 0.281428456306458 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75551705 chr10:75551724 nonsynonymous SNV 1.000 0 40 hm5C_associated_SNPs_45526 0 0 1 0 0 Cytosol 1 0.500231643921096 1 0.999536712157809 hm5C_site_44307 DeepMRMD:1;iRNA_m5C:0.999536712157809 44308 chr12 69119559 69119559 1 + T C UCEC 69119560 + 69119540 69119580 41 ATAGTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAA ATAGTTCAAAAGTTTCTTACCCTGGGAGACATTGATGGTAA < 41bp 1 0.307239294321563 1 0.473795205354691 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119560 chr12:69119559 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_45527 0 0 1 0 2 chromatin 1 0.500231643922375 1 0.99953671215525 hm5C_site_44308 DeepMRMD:1;iRNA_m5C:0.99953671215525 44309 chr6 25983642 25983642 1 + G T UCEC 25983632 + 25983612 25983652 41 GGAAAATGTGCAGAGGGGCACTGGCATGAAGCAAGAGCCTC GGAAAATGTGCAGAGGGGCACTGGCATGAATCAAGAGCCTC < 41bp 1 0.519113866436126 1 0.229247838258743 experiment 0.961772267127749 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TRIM38 ENSG00000112343 CDS Human protein_coding chr6:25983632 chr6:25983642 nonsynonymous SNV 0.008 0 31 hm5C_associated_SNPs_45528 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_44309 DeepMRMD:1;iRNA_m5C:0.999536712157815 44310 chr11 111896434 111896434 1 + T C UCEC 111896435 + 111896415 111896455 41 ACTGCTGCAGCTTTTGGGGTCGCCCGGCCGCCGCTATTACA ACTGCTGCAGCTTTTGGGGCCGCCCGGCCGCCGCTATTACA < 41bp 1 0.331245503399115 1 0.128631204366684 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DLAT ENSG00000150768 CDS Human protein_coding chr11:111896435 chr11:111896434 nonsynonymous SNV 0.203 0 20 hm5C_associated_SNPs_45529 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44310 DeepMRMD:1;iRNA_m5C:0.999536712157815 44311 chr22 35726433 35726433 1 + G A UCEC 35726424 + 35726404 35726444 41 ATGAGCAGCTGACAGAGGAGCTGCTCATCGTCAATGACAAT ATGAGCAGCTGACAGAGGAGCTGCTCATCATCAATGACAAT < 41bp 1 0.135943126184217 1 0.0452596843242645 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TOM1 ENSG00000100284 CDS Human protein_coding chr22:35726424 chr22:35726433 nonsynonymous SNV 0.944 0 30 hm5C_associated_SNPs_45530 0 0 1 1 2 Cytosol 1 0.500231643919149 1 0.999536712161702 hm5C_site_44311 DeepMRMD:1;iRNA_m5C:0.999536712161702 44312 chr17 36619125 36619125 1 + A G UCEC 36619123 + 36619103 36619143 41 CCGCCTGGAGCCCATGGACACCATCTTTGTCAAGAATGTGA CCGCCTGGAGCCCATGGACACCGTCTTTGTCAAGAATGTGA < 41bp 1 0.0549066251358274 1 0.0408101677894592 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGAP23 ENSG00000225485 CDS Human other chr17:36619123 chr17:36619125 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_45531 0 0 0 0 2 nucleus 1 0.500231643930234 1 0.999536712139531 hm5C_site_44312 DeepMRMD:1;iRNA_m5C:0.999536712139531 44313 chr7 5952549 5952549 1 + T C UCEC 5952554 + 5952534 5952574 41 TTTTGTAAATACAGATGACACTTATGAAGAGCTCCATTTAA TTTTGTAAATACAGACGACACTTATGAAGAGCTCCATTTAA < 41bp 1 0.224055851306554 1 0.026585191488266 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5952554 chr7:5952549 synonymous SNV . 0 16 hm5C_associated_SNPs_45532 0 0 0 0 2 Ribosome 1 0.500231643936392 1 0.999536712127216 hm5C_site_44313 DeepMRMD:1;iRNA_m5C:0.999536712127216 44314 chr7 5952571 5952571 1 + T G UCEC 5952554 + 5952534 5952574 41 TTTTGTAAATACAGATGACACTTATGAAGAGCTCCATTTAA TTTTGTAAATACAGATGACACTTATGAAGAGCTCCATGTAA < 41bp 1 0.254042008816594 1 0.0273202359676361 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5952554 chr7:5952571 nonsynonymous SNV 1.000 2 38 hm5C_associated_SNPs_45533 0 0 0 0 2 Ribosome 1 0.500231643614415 1 0.999536712771169 hm5C_site_44314 DeepMRMD:1;iRNA_m5C:0.999536712771169 44315 chr19 10886498 10886498 1 + A G UCEC 10886497 + 10886477 10886517 41 CAGTTCATCAGCCGGGAGAGCAGCCTCATTCTGGCTGTCAC CAGTTCATCAGCCGGGAGAGCGGCCTCATTCTGGCTGTCAC < 41bp 1 0.267303699099767 1 0.267601728439331 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10886497 chr19:10886498 nonsynonymous SNV 0.943 3 22 hm5C_associated_SNPs_45534 0 0 1 1 1 Nucleus 1 0.500231643964191 1 0.999536712071617 hm5C_site_44315 DeepMRMD:1;iRNA_m5C:0.999536712071617 44316 chr7 22896288 22896288 1 + A C UCEC 22896268 + 22896248 22896288 41 CTCTAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAA CTCTAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAC < 41bp 1 0.100257130814153 1 0.0554837882518768 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896268 chr7:22896288 . . 0 41 hm5C_associated_SNPs_45535 0 0 1 0 0 unknown 1 0.500231352614571 1 0.999537294770858 hm5C_site_44316 DeepMRMD:1;iRNA_m5C:0.999537294770858 44317 chr7 22896288 22896288 1 + A C UCEC 22896271 + 22896251 22896291 41 TAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAAAGGA TAATCTGATTTTATGTGCTTCTGCTGTGATGGATTAACGGA < 41bp 1 0.451843398994069 1 0.111886590719223 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896271 chr7:22896288 . . 0 38 hm5C_associated_SNPs_45536 0 0 1 0 0 unknown 1 0.50023165035951 1 0.99953669928098 hm5C_site_44317 DeepMRMD:1;iRNA_m5C:0.99953669928098 44318 chr7 22896288 22896288 1 + A C UCEC 22896296 + 22896276 22896316 41 GTGATGGATTAAAGGATTTACCTGAGGCCAAATTGGTATGC GTGATGGATTAACGGATTTACCTGAGGCCAAATTGGTATGC < 41bp 1 0.598607518160813 1 0.0437758266925812 experiment 0.802784963678375 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896296 chr7:22896288 . . 0 13 hm5C_associated_SNPs_45537 0 0 1 0 0 unknown 1 0.500231644082979 1 0.999536711834041 hm5C_site_44318 DeepMRMD:1;iRNA_m5C:0.999536711834041 44319 chr7 22896288 22896288 1 + A C UCEC 22896303 + 22896283 22896323 41 ATTAAAGGATTTACCTGAGGCCAAATTGGTATGCAGGAATT ATTAACGGATTTACCTGAGGCCAAATTGGTATGCAGGAATT < 41bp 1 0.378503322199921 1 0.414163380861282 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SNORD93 ENSG00000221740 ncRNA_exonic Human snoRNA chr7:22896303 chr7:22896288 . . 0 6 hm5C_associated_SNPs_45538 0 0 1 0 0 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_44319 DeepMRMD:1;iRNA_m5C:0.999536712157815 Hyperactive-impulsive symptoms 44320 chr4 103500165 103500165 1 + A G UCEC 103500160 + 103500140 103500180 41 CTGGCAGCTTCACAAGGCGCCTGGAACCCGTGGTATCAGAC CTGGCAGCTTCACAAGGCGCCTGGAGCCCGTGGTATCAGAC < 41bp 1 0.693635674863559 1 0.510310292243958 experiment 0.612728650272881 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103500160 chr4:103500165 synonymous SNV . 0 26 hm5C_associated_SNPs_45539 0 0 1 0 1 Ribosome 1 0.500231644059209 0.979379415512084 0.999536711881583 hm5C_site_44320 DeepMRMD:0.979379415512084;iRNA_m5C:0.999536711881583 44321 chr20 33033236 33033236 1 + G A UCEC 33033240 + 33033220 33033260 41 AGCTTCAAGGAGCAATGCAGCAGTTTAACCAGAGATTCATT AGCTTCAAGGAGCAATACAGCAGTTTAACCAGAGATTCATT < 41bp 1 0.233071436703963 1 0.219451904296875 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ITCH ENSG00000078747 CDS Human protein_coding chr20:33033240 chr20:33033236 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_45540 0 0 1 0 1 Ribosome 1 0.50022708387999 1 0.999545832240021 hm5C_site_44321 DeepMRMD:1;iRNA_m5C:0.999545832240021 44322 chr18 19371515 19371515 1 + T C UCEC 19371516 + 19371496 19371536 41 AATGGGCTGAAGCGATGCTTCCAGTAAGTATGTTTAGAATA AATGGGCTGAAGCGATGCTCCCAGTAAGTATGTTTAGAATA < 41bp 1 0.186737894304327 1 0.0326895713806152 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MIB1 ENSG00000101752 CDS Human protein_coding chr18:19371516 chr18:19371515 synonymous SNV . 0 20 hm5C_associated_SNPs_45541 0 0 1 0 1 Nucleus 1 0.500231767405123 1 0.999536465189754 hm5C_site_44322 DeepMRMD:1;iRNA_m5C:0.999536465189754 44323 chr13 100920966 100920966 1 + T C UCEC 100920958 + 100920938 100920978 41 TTCAGGTTCTAGGTGATAAACATGGGAATGCTTTATGGCTT TTCAGGTTCTAGGTGATAAACATGGGAACGCTTTATGGCTT < 41bp 1 0.497743775595783 1 0.509622037410736 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:100920958 chr13:100920966 synonymous SNV . 0 29 hm5C_associated_SNPs_45542 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643295744 0.980755925178528 0.999536713408511 hm5C_site_44323 DeepMRMD:0.980755925178528;iRNA_m5C:0.999536713408511 44324 chr8 17794722 17794722 1 + G T UCEC 17794729 + 17794709 17794749 41 GAAAGTGATAAAAGAGTAACCAATGATATTTCTCCGGAGTC GAAAGTGATAAAATAGTAACCAATGATATTTCTCCGGAGTC < 41bp 1 0.296431344859016 1 0.453016072511673 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCM1 ENSG00000078674 CDS Human protein_coding chr8:17794729 chr8:17794722 nonsynonymous SNV 0.997 4 14 hm5C_associated_SNPs_45543 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44324 DeepMRMD:1;iRNA_m5C:0.999536712157815 44325 chr11 64118672 64118672 1 + C T UCEC 64118659 + 64118639 64118679 41 AGGGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCT AGGGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGTGGAGCCT < 41bp 1 0.316977952018454 1 0.383491218090057 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118659 chr11:64118672 nonsynonymous SNV 0.000 0 34 hm5C_associated_SNPs_45544 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44325 DeepMRMD:1;iRNA_m5C:0.999536712157815 44326 chr11 64118672 64118672 1 + C T UCEC 64118660 + 64118640 64118680 41 GGGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCTC GGGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGTGGAGCCTC < 41bp 1 0.283620230291822 1 0.355224311351776 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118660 chr11:64118672 nonsynonymous SNV 0.000 0 33 hm5C_associated_SNPs_45545 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44326 DeepMRMD:1;iRNA_m5C:0.999536712157815 44327 chr11 64118672 64118672 1 + C T UCEC 64118661 + 64118641 64118681 41 GGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGCGGAGCCTCA GGCCCCGCGGGGCTGGGGCCCAAAAAGCGTGTGGAGCCTCA < 41bp 1 0.505354616347329 1 0.667921483516693 experiment 0.989290767305341 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118661 chr11:64118672 nonsynonymous SNV 0.000 0 32 hm5C_associated_SNPs_45546 0 0 1 0 1 Ribosome 1 0.500231643921092 0.664157032966614 0.999536712157815 hm5C_site_44327 DeepMRMD:0.664157032966614;iRNA_m5C:0.999536712157815 44328 chr16 675487 675487 1 + G A UCEC 675485 + 675465 675505 41 TGGTCCTTTGACGGCATCGACCGCTGGATCAAGGAGATCGA TGGTCCTTTGACGGCATCGACCACTGGATCAAGGAGATCGA < 41bp 1 0.119303374040112 1 0.0999394357204437 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RAB40C ENSG00000197562 CDS Human protein_coding chr16:675485 chr16:675487 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_45547 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_44328 DeepMRMD:1;iRNA_m5C:0.999536712157814 44329 chr1 161753836 161753836 1 + G T UCEC 161753845 + 161753825 161753865 41 CAAGTTATTCAGTCTCGTCTCCTCGGTCAGTGGACTCTTAT CAAGTTATTCATTCTCGTCTCCTCGGTCAGTGGACTCTTAT < 41bp 1 0.144143056165242 1 0.105536103248596 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF6 ENSG00000118217 CDS Human protein_coding chr1:161753845 chr1:161753836 nonsynonymous SNV 0.982 1 12 hm5C_associated_SNPs_45548 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921528 1 0.999536712156944 hm5C_site_44329 DeepMRMD:1;iRNA_m5C:0.999536712156944 44330 chr6 90305654 90305654 1 + A G UCEC 90305648 + 90305628 90305668 41 TTCACAGCATGGCCGGACTCCCCTGCATCTTGCTGCCAATA TTCACAGCATGGCCGGACTCCCCTGCGTCTTGCTGCCAATA < 41bp 1 0.100405628402189 1 0.0721805989742279 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90305648 chr6:90305654 nonsynonymous SNV 0.992 3 27 hm5C_associated_SNPs_45549 0 0 0 0 2 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_44330 DeepMRMD:1;iRNA_m5C:0.999536712157814 44331 chr1 39926411 39926411 1 + G T UCEC 39926397 + 39926377 39926417 41 CTCGAGTGATGGATTTCTTCCGGCGCATTGATAAGGACCAG CTCGAGTGATGGATTTCTTCCGGCGCATTGATAATGACCAG < 41bp 1 0.223273294783978 1 0.804598212242126 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39926397 chr1:39926411 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_45550 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.390803575515748 0.999536712157815 hm5C_site_44331 DeepMRMD:0.390803575515748;iRNA_m5C:0.999536712157815 44332 chr17 40817765 40817765 1 + G A UCEC 40817780 + 40817760 40817800 41 TCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC TCATCAGCCTCATCGCCTCGCTCATTCCCACCCCACGGCTC < 41bp 1 0.348969962898014 1 0.0434269607067108 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817780 chr17:40817765 nonsynonymous SNV 1.000 2 6 hm5C_associated_SNPs_45551 0 0 0 0 2 Cytosol 1 0.50023175309504 1 0.99953649380992 hm5C_site_44332 DeepMRMD:1;iRNA_m5C:0.99953649380992 44333 chr1 171558668 171558668 1 + G T UCEC 171558656 + 171558636 171558676 41 CATGAGCCATGCTCGTTTGCCACATGTAGCCAGGGGTCCTT CATGAGCCATGCTCGTTTGCCACATGTAGCCATGGGTCCTT < 41bp 1 0.373812532839268 1 0.182383209466934 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171558656 chr1:171558668 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_45552 0 0 1 0 1 Cytosol 1 0.500228990156229 1 0.999542019687541 hm5C_site_44333 DeepMRMD:1;iRNA_m5C:0.999542019687541 44334 chr17 18057177 18057177 1 + G T UCEC 18057159 + 18057139 18057179 41 CTGCACCGCCTCATCAATCCCAACTTCTACGGCTATCAGGA CTGCACCGCCTCATCAATCCCAACTTCTACGGCTATCATGA < 41bp 1 0.132883920845515 1 0.127401351928711 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MYO15A ENSG00000091536 CDS Human protein_coding chr17:18057159 chr17:18057177 nonsynonymous SNV 0.999 1 39 hm5C_associated_SNPs_45553 0 0 0 0 1 chromatin 1 0.500231643932887 1 0.999536712134226 hm5C_site_44334 DeepMRMD:1;iRNA_m5C:0.999536712134226 44335 chr1 151633300 151633300 1 + A G UCEC 151633305 + 151633285 151633325 41 CGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATC CGAGTAATTGGTGAGGGTGACATCATGCAGGAATTCCTATC < 41bp 1 0.343796737577254 1 0.337820738554001 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX27 ENSG00000143376 CDS Human protein_coding chr1:151633305 chr1:151633300 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_45554 0 0 1 0 1 Ribosome 1 0.500231643920248 1 0.999536712159504 hm5C_site_44335 DeepMRMD:1;iRNA_m5C:0.999536712159504 44336 chr6 168363206 168363206 1 + C T UCEC 168363202 + 168363182 168363222 41 GCGAGGCAAGAGGAAGAGCGCCGGCGGCAGGAGGAGGAGCG GCGAGGCAAGAGGAAGAGCGCCGGTGGCAGGAGGAGGAGCG < 41bp 1 0.345457802389927 1 0.617064356803894 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168363202 chr6:168363206 nonsynonymous SNV 0.127 0 25 hm5C_associated_SNPs_45555 0 0 1 0 3 unknown 1 0.500231647970232 0.765871286392212 0.999536704059537 hm5C_site_44336 DeepMRMD:0.765871286392212;iRNA_m5C:0.999536704059537 44337 chr5 140347711 140347711 1 + A G UCEC 140347691 + 140347671 140347711 41 AGCCACAGATGGGGGAATACCGCAGCTCACATCCCTGCGTA AGCCACAGATGGGGGAATACCGCAGCTCACATCCCTGCGTG < 41bp 1 0.665174051196751 1 0.923115491867065 experiment 0.669651897606497 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCDHAC2 ENSG00000243232 CDS Human protein_coding chr5:140347691 chr5:140347711 nonsynonymous SNV 0.941 1 41 hm5C_associated_SNPs_45557 0 0 0 0 0 exosome 1 0.500224014223752 0.15376901626587 0.999551971552496 hm5C_site_44337 DeepMRMD:0.15376901626587;iRNA_m5C:0.999551971552496 44338 chr1 94964166 94964166 1 + T C UCEC 94964179 + 94964159 94964199 41 TTCGATCTGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC TTCGATCCGGGGCTAATGTTCTAATTTGTGGTCCAAATGGC < 41bp 1 0.497053647298543 1 0.181958705186844 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964179 chr1:94964166 synonymous SNV . 0 8 hm5C_associated_SNPs_45558 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44338 DeepMRMD:1;iRNA_m5C:0.999536712157815 44339 chr13 24242896 24242896 1 + G A UCEC 24242887 + 24242867 24242907 41 CTTCGGATCCCTCACGCAGTCCATCTGTGGCGAGTTTTCAG CTTCGGATCCCTCACGCAGTCCATCTGTGACGAGTTTTCAG < 41bp 1 0.114807286270899 1 0.0905694663524628 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24242887 chr13:24242896 nonsynonymous SNV 0.838 4 30 hm5C_associated_SNPs_45559 0 0 1 0 1 cytosol 1 0.500231639255941 1 0.999536721488119 hm5C_site_44339 DeepMRMD:1;iRNA_m5C:0.999536721488119 44340 chr3 49742453 49742453 1 + C T UCEC 49742448 + 49742428 49742468 41 GGCCCTGGCTGTTGGGGGGCCACTGCCCCTGCCCCGGCCCG GGCCCTGGCTGTTGGGGGGCCACTGTCCCTGCCCCGGCCCG < 41bp 1 0.454021359435791 1 0.241435497999191 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742448 chr3:49742453 nonsynonymous SNV 0.969 0 26 hm5C_associated_SNPs_45560 0 0 1 0 1 Nucleus 1 0.500231707948359 1 0.999536584103282 hm5C_site_44340 DeepMRMD:1;iRNA_m5C:0.999536584103282 44341 chr4 8230120 8230120 1 + G T UCEC 8230125 + 8230105 8230145 41 ACCTGGGCCAGCAAAGGAACCAGGCAGTGGGGCTGGCCAAC ACCTGGGCCAGCAAATGAACCAGGCAGTGGGGCTGGCCAAC < 41bp 1 0.552450937174729 1 0.777976214885712 experiment 0.895098125650542 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8230125 chr4:8230120 nonsynonymous SNV 0.032 2 16 hm5C_associated_SNPs_45561 0 0 0 0 0 cytosol 1 0.50023165301367 0.444047570228576 0.999536693972661 hm5C_site_44341 DeepMRMD:0.444047570228576;iRNA_m5C:0.999536693972661 44342 chr12 112915711 112915711 1 + T C UCEC 112915716 + 112915696 112915736 41 CAAAAAGAGTTACATTGCCACACAAGGCTGCCTGCAAAACA CAAAAAGAGTTACATCGCCACACAAGGCTGCCTGCAAAACA < 41bp 1 0.523251084806464 1 0.141052097082138 experiment 0.953497830387072 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915716 chr12:112915711 synonymous SNV . 0 16 hm5C_associated_SNPs_45562 0 0 1 0 1 Ribosome 1 0.500230549589758 1 0.999538900820484 hm5C_site_44342 DeepMRMD:1;iRNA_m5C:0.999538900820484 44343 chr6 96976484 96976484 1 + G A UCEC 96976482 + 96976462 96976502 41 GCTCGACATAAAGCACGTATCCGTGGACTATTCAGTGCTAT GCTCGACATAAAGCACGTATCCATGGACTATTCAGTGCTAT < 41bp 1 0.318847876620087 1 0.225613683462143 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UFL1 ENSG00000014123 CDS Human protein_coding chr6:96976482 chr6:96976484 nonsynonymous SNV 0.981 2 23 hm5C_associated_SNPs_45563 0 0 1 0 1 Endoplasmic reticulum 1 0.500231625686185 1 0.999536748627631 hm5C_site_44343 DeepMRMD:1;iRNA_m5C:0.999536748627631 44344 chr9 100077142 100077142 1 + G A UCEC 100077158 + 100077138 100077178 41 AAGCGTGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT AAGCATGTTGAAGAAATATGCAGAAGTCATAGAGAAAACTT < 41bp 1 0.583651564466374 1 0.502076923847198 experiment 0.832696871067251 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100077158 chr9:100077142 nonsynonymous SNV 0.518 4 5 hm5C_associated_SNPs_45564 0 0 0 2 2 chromatin 1 0.500232516082281 0.995846152305604 0.999534967835439 hm5C_site_44344 DeepMRMD:0.995846152305604;iRNA_m5C:0.999534967835439 44345 chr1 43897038 43897038 1 + G T UCEC 43897029 + 43897009 43897049 41 CTCGGGCCCCCACTGCCACCCCCAGAAGAGGAGAGGTACTT CTCGGGCCCCCACTGCCACCCCCAGAAGATGAGAGGTACTT < 41bp 1 0.0412030249081828 1 0.433579355478287 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient SZT2 ENSG00000198198 CDS Human protein_coding chr1:43897029 chr1:43897038 nonsynonymous SNV 0.999 0 30 hm5C_associated_SNPs_45566 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44345 DeepMRMD:1;iRNA_m5C:0.999536712157815 44346 chr10 70525793 70525793 1 + T C UCEC 70525803 + 70525783 70525823 41 TTGAGTGTCCTATTGGACTACAGATTAGAGGATAATAAAGA TTGAGTGTCCCATTGGACTACAGATTAGAGGATAATAAAGA < 41bp 1 0.233912594230355 1 0.276315093040466 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70525803 chr10:70525793 nonsynonymous SNV 0.872 4 11 hm5C_associated_SNPs_45567 0 0 1 0 1 Nucleus 1 0.500231643921089 1 0.999536712157823 hm5C_site_44346 DeepMRMD:1;iRNA_m5C:0.999536712157823 44347 chr9 131897104 131897104 1 + G A UCEC 131897102 + 131897082 131897122 41 GCAGCCTTCGCTGCTTTCCTCTGCTGTCTCTGCAAGATTGG GCAGCCTTCGCTGCTTTCCTCTACTGTCTCTGCAAGATTGG < 41bp 1 0.376906134297422 1 0.174069076776505 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPA ENSG00000119383 CDS Human protein_coding chr9:131897102 chr9:131897104 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_45569 0 0 1 0 2 Nucleus 1 0.500231643921602 1 0.999536712156795 hm5C_site_44347 DeepMRMD:1;iRNA_m5C:0.999536712156795 Red blood cell count 44348 chr19 36360657 36360657 1 + A G UCEC 36360676 + 36360656 36360696 41 CAGCGCTCTCGACGCTGTCTCCGGGACCCGCAGCGCGTGCT CGGCGCTCTCGACGCTGTCTCCGGGACCCGCAGCGCGTGCT < 41bp 1 0.585023528519326 1 0.918009638786316 experiment 0.829952942961348 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control APLP1 ENSG00000105290 CDS Human protein_coding chr19:36360676 chr19:36360657 nonsynonymous SNV 0.889 4 2 hm5C_associated_SNPs_45570 0 0 0 0 3 Endoplasmic reticulum 1 0.500231687127371 0.163980722427368 0.999536625745259 hm5C_site_44348 DeepMRMD:0.163980722427368;iRNA_m5C:0.999536625745259 44349 chr5 153709263 153709263 1 + C T UCEC 153709248 + 153709228 153709268 41 CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGCCGAGA CAGTGTGCTCAATCGCTCGCCTCCAGAGCTGGTCGTCGAGA < 41bp 1 0.591161438292626 1 0.919673085212708 experiment 0.817677123414748 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153709248 chr5:153709263 nonsynonymous SNV 0.809 1 36 hm5C_associated_SNPs_45571 0 0 0 0 1 Ribosome 1 0.500195133810748 0.160653829574584 0.999609732378503 hm5C_site_44349 DeepMRMD:0.160653829574584;iRNA_m5C:0.999609732378503 44350 chr19 1912878 1912878 1 + G A UCEC 1912858 + 1912838 1912878 41 CTGCTCCTTCGCCCCGGCCGCTGCCCCCCAGGCCGTCCGCG CTGCTCCTTCGCCCCGGCCGCTGCCCCCCAGGCCGTCCGCA < 41bp 1 0.121730116788973 1 0.227779418230057 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ADAT3 ENSG00000213638 CDS Human protein_coding chr19:1912858 chr19:1912878 nonsynonymous SNV 0.001 0 41 hm5C_associated_SNPs_45572 0 0 1 0 0 exosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_44350 DeepMRMD:1;iRNA_m5C:0.999536712157812 44351 chr1 59811984 59811984 1 + A G UCEC 59811996 + 59811976 59812016 41 ACAGGATCAATGAGACCAAGCACAGTGTCCTCCAGTACGTC ACAGGATCGATGAGACCAAGCACAGTGTCCTCCAGTACGTC < 41bp 1 0.504128910425562 1 0.0629615783691406 experiment 0.991742179148877 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FGGY ENSG00000172456 CDS Human protein_coding chr1:59811996 chr1:59811984 nonsynonymous SNV 0.121 4 9 hm5C_associated_SNPs_45573 0 0 0 0 2 Endoplasmic reticulum 1 0.500231756137507 1 0.999536487724985 hm5C_site_44351 DeepMRMD:1;iRNA_m5C:0.999536487724985 44352 chr20 2635156 2635156 1 + C T UCEC 2635143 + 2635123 2635163 41 TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGCCGCAATA TACTCTTGGGAGTTGGGGATCCCAAGATTGGTGTCGCAATA < 41bp 1 0.564176668974004 1 0.177801549434662 experiment 0.871646662051992 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635143 chr20:2635156 nonsynonymous SNV 0.988 2 34 hm5C_associated_SNPs_45574 0 0 1 0 2 Cytosol 1 0.500231643921091 1 0.999536712157817 hm5C_site_44352 DeepMRMD:1;iRNA_m5C:0.999536712157817 44353 chr20 2635156 2635156 1 + C T UCEC 2635157 + 2635137 2635177 41 GGGGATCCCAAGATTGGTGCCGCAATACAGGAGGAGTTAGG GGGGATCCCAAGATTGGTGTCGCAATACAGGAGGAGTTAGG < 41bp 1 0.642319342325029 1 0.614174604415894 experiment 0.715361315349941 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635157 chr20:2635156 nonsynonymous SNV 0.988 2 20 hm5C_associated_SNPs_45575 0 0 1 0 2 Cytosol 1 0.500231643922438 0.771650791168212 0.999536712155125 hm5C_site_44353 DeepMRMD:0.771650791168212;iRNA_m5C:0.999536712155125 44354 chr19 757468 757468 1 + C A UCEC 757482 + 757462 757502 41 CCCCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGG CCCCGGACCACCTCGGTCCACGCCCCTGGAGGAGAACGTGG < 41bp 1 0.367104093148038 1 0.0406960248947144 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757482 chr19:757468 synonymous SNV . 0 7 hm5C_associated_SNPs_45576 0 0 0 0 0 nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_44354 DeepMRMD:1;iRNA_m5C:0.999536712157815 44355 chr19 757468 757468 1 + C A UCEC 757484 + 757464 757504 41 CCGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTT CCGGACCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTT < 41bp 1 0.243269824981379 1 0.172429859638214 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757484 chr19:757468 synonymous SNV . 0 5 hm5C_associated_SNPs_45577 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44355 DeepMRMD:1;iRNA_m5C:0.999536712157815 44356 chr19 757468 757468 1 + C A UCEC 757485 + 757465 757505 41 CGGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTG CGGACCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTG < 41bp 1 0.161198958680731 1 0.364741861820221 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757485 chr19:757468 synonymous SNV . 0 4 hm5C_associated_SNPs_45578 0 0 0 0 0 nucleus 1 0.500232120031785 1 0.99953575993643 hm5C_site_44356 DeepMRMD:1;iRNA_m5C:0.99953575993643 44357 chr19 757468 757468 1 + C A UCEC 757486 + 757466 757506 41 GGCCCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTGA GGACCACCTCGGTCCACGCCCCTGGAGGAGAACGTGGTTGA < 41bp 1 0.273038265347774 1 0.487974643707275 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MISP ENSG00000099812 CDS Human protein_coding chr19:757486 chr19:757468 synonymous SNV . 0 3 hm5C_associated_SNPs_45579 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44357 DeepMRMD:1;iRNA_m5C:0.999536712157815 44358 chr1 6271124 6271124 1 + C T UCEC 6271142 + 6271122 6271162 41 GCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG GCTACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCTG < 41bp 1 0.432019626959445 1 0.265682756900787 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF207 ENSG00000158286 CDS Human protein_coding chr1:6271142 chr1:6271124 nonsynonymous SNV 0.864 3 3 hm5C_associated_SNPs_45580 0 0 1 0 2 Nucleus 1 0.500231693689205 1 0.999536612621589 hm5C_site_44358 DeepMRMD:1;iRNA_m5C:0.999536612621589 44359 chr12 6978336 6978336 1 + G A UCEC 6978340 + 6978320 6978360 41 AAGGCATGTCTTTGGGGAGTCAGATGAGGTTAGTAGCCAAG AAGGCATGTCTTTGGGAAGTCAGATGAGGTTAGTAGCCAAG < 41bp 1 0.470152982430068 1 0.704167068004608 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient TPI1 ENSG00000111669 CDS Human protein_coding chr12:6978340 chr12:6978336 nonsynonymous SNV 1.000 4 17 hm5C_associated_SNPs_45581 0 0 1 0 2 Ribosome 1 0.500231643921092 0.591665863990784 0.999536712157815 hm5C_site_44359 DeepMRMD:0.591665863990784;iRNA_m5C:0.999536712157815 44360 chr16 56973820 56973820 1 + G T UCEC 56973818 + 56973798 56973838 41 TTATTTTAGTTTAGCAGCCACTGCTGCATCAGGGGCTTTTG TTATTTTAGTTTAGCAGCCACTTCTGCATCAGGGGCTTTTG < 41bp 1 0.141276816764859 1 0.122068285942078 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56973818 chr16:56973820 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_45582 0 0 1 0 1 Ribosome 1 0.500231648436496 1 0.999536703127008 hm5C_site_44360 DeepMRMD:1;iRNA_m5C:0.999536703127008 44361 chr21 40191653 40191653 1 + A G UCEC 40191635 + 40191615 40191655 41 TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACC TACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAGCC < 41bp 1 0.234629531303422 1 0.224783390760422 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191635 chr21:40191653 synonymous SNV . 0 39 hm5C_associated_SNPs_45583 0 0 0 0 1 Ribosome 1 0.500231643143215 1 0.99953671371357 hm5C_site_44361 DeepMRMD:1;iRNA_m5C:0.99953671371357 44362 chr21 40191653 40191653 1 + A G UCEC 40191636 + 40191616 40191656 41 ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCA ACATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAGCCA < 41bp 1 0.459178120100375 1 0.533065557479858 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191636 chr21:40191653 synonymous SNV . 0 38 hm5C_associated_SNPs_45584 0 0 0 0 1 Ribosome 1 0.500231643920971 0.933868885040284 0.999536712158057 hm5C_site_44362 DeepMRMD:0.933868885040284;iRNA_m5C:0.999536712158057 44363 chr21 40191653 40191653 1 + A G UCEC 40191637 + 40191617 40191657 41 CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAACCAG CATCCAAGAGAGGAGTGACCCAGTGGAGCAAGGCAAGCCAG < 41bp 1 0.688707195594056 1 0.798409700393677 experiment 0.622585608811888 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ETS2 ENSG00000157557 CDS Human protein_coding chr21:40191637 chr21:40191653 synonymous SNV . 0 37 hm5C_associated_SNPs_45585 0 0 0 0 1 Ribosome 1 0.500231643921073 0.403180599212646 0.999536712157853 hm5C_site_44363 DeepMRMD:0.403180599212646;iRNA_m5C:0.999536712157853 44364 chr19 42862325 42862325 1 + G A UCEC 42862330 + 42862310 42862350 41 TCTGCTGTCTACCACGAGGCCACCGACTCCCTCTACGTGTT TCTGCTGTCTACCACAAGGCCACCGACTCCCTCTACGTGTT < 41bp 1 0.228615746576601 1 0.0367600917816162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42862330 chr19:42862325 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_45586 0 0 0 0 1 Endoplasmic reticulum 1 0.500231779702226 1 0.999536440595548 hm5C_site_44364 DeepMRMD:1;iRNA_m5C:0.999536440595548 44365 chr19 42862325 42862325 1 + G A UCEC 42862340 + 42862320 42862360 41 ACCACGAGGCCACCGACTCCCTCTACGTGTTTGGGGGGTTC ACCACAAGGCCACCGACTCCCTCTACGTGTTTGGGGGGTTC < 41bp 1 0.346542612016384 1 0.383200526237488 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42862340 chr19:42862325 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_45587 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44365 DeepMRMD:1;iRNA_m5C:0.999536712157815 44366 chr13 111111172 111111172 1 + C T UCEC 111111171 + 111111151 111111191 41 ACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAG ACGAAGCTATCAAAGGTCTTCTGGGACTGCCAGGACCCAAG < 41bp 1 0.52473526765133 1 0.438805609941483 experiment 0.95052946469734 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111111171 chr13:111111172 nonsynonymous SNV 0.040 4 22 hm5C_associated_SNPs_45588 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44366 DeepMRMD:1;iRNA_m5C:0.999536712157815 44367 chr12 57922979 57922979 1 + C T UCEC 57922978 + 57922958 57922998 41 CCTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAG CCTCCCCGGGCCCGCCCTGGCTGTCCTGCCAAAAACAAGAG < 41bp 1 0.168939641184191 1 0.155006855726242 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57922978 chr12:57922979 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_45590 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_44367 DeepMRMD:1;iRNA_m5C:0.999536712157815 44368 chr2 236403459 236403459 1 + G T UCEC 236403477 + 236403457 236403497 41 CAGAACCAGATCCGGGAGCACGTCATCGCCATCGAAGGTGA CATAACCAGATCCGGGAGCACGTCATCGCCATCGAAGGTGA < 41bp 1 0.424460252379028 1 0.23746919631958 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236403477 chr2:236403459 nonsynonymous SNV 1.000 2 3 hm5C_associated_SNPs_45591 0 0 1 0 1 Nucleus 1 0.500231648799807 1 0.999536702400386 hm5C_site_44368 DeepMRMD:1;iRNA_m5C:0.999536702400386 44369 chr17 48148800 48148800 1 + C T UCEC 48148790 + 48148770 48148810 41 TTGCTGAGCCAGGAGGCAGGCGGAGACCTGCGGAGGAGGCA TTGCTGAGCCAGGAGGCAGGCGGAGACCTGTGGAGGAGGCA < 41bp 1 0.442010552627767 1 0.85346919298172 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48148790 chr17:48148800 nonsynonymous SNV 0.989 1 31 hm5C_associated_SNPs_45592 0 0 0 0 1 Cytosol 1 0.500231643921092 0.29306161403656 0.999536712157815 hm5C_site_44369 DeepMRMD:0.29306161403656;iRNA_m5C:0.999536712157815 44370 chr1 100740453 100740453 1 + T G UCEC 100740467 + 100740447 100740487 41 ATAAATTTAACTGAGCGTGGCTGTGTGACTAAGATATATGG ATAAATGTAACTGAGCGTGGCTGTGTGACTAAGATATATGG < 41bp 1 0.266281239723778 1 0.135373175144196 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RTCA ENSG00000137996 CDS Human protein_coding chr1:100740467 chr1:100740453 nonsynonymous SNV 0.979 1 7 hm5C_associated_SNPs_45593 0 0 1 0 2 Ribosome 1 0.500231643921179 1 0.999536712157642 hm5C_site_44370 DeepMRMD:1;iRNA_m5C:0.999536712157642 44371 chr10 73566025 73566025 1 + T C UCEC 73566026 + 73566006 73566046 41 GATGACAACGAACCCCTTTTCGTGAGGCCTCCAGTGAGCTT GATGACAACGAACCCCTTTCCGTGAGGCCTCCAGTGAGCTT < 41bp 1 0.51315722386448 1 0.282740831375122 experiment 0.97368555227104 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73566026 chr10:73566025 nonsynonymous SNV 0.997 4 20 hm5C_associated_SNPs_45594 0 0 0 0 1 exosome 1 0.500231643921226 1 0.999536712157547 hm5C_site_44371 DeepMRMD:1;iRNA_m5C:0.999536712157547 44372 chr1 161179359 161179359 1 + T G UCEC 161179358 + 161179338 161179378 41 CTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAAG CTTGGGGCCATGACCCCTTTCGTCTGGCTGTTTGAAGAAAG < 41bp 1 0.317160257086913 1 0.321732372045517 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179358 chr1:161179359 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_45595 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44372 DeepMRMD:1;iRNA_m5C:0.999536712157815 44373 chrX 73044538 73044538 1 + C T UCEC 73044553 - 73044533 73044573 41 GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGT GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCAAATGT < 41bp 1 0.140111564588106 1 0.0311310291290283 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044553 chrX:73044538 . . 0 36 hm5C_associated_SNPs_45596 0 0 1 1 0 unknown 1 0.500232575722331 1 0.999534848555339 hm5C_site_44373 DeepMRMD:1;iRNA_m5C:0.999534848555339 44374 chrX 73044538 73044538 1 + C T UCEC 73044555 - 73044535 73044575 41 GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAAT GTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCAAAT < 41bp 1 0.0759810451307282 1 0.0475502610206604 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044555 chrX:73044538 . . 0 38 hm5C_associated_SNPs_45597 0 0 1 1 0 unknown 1 0.500231781184481 1 0.999536437631038 hm5C_site_44374 DeepMRMD:1;iRNA_m5C:0.999536437631038 44375 chr20 55049793 55049793 1 + T G UCEC 55049773 + 55049753 55049793 41 GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCT GTCATTGAATTTCTCTTGGACAAATCTGCAGAAAAGGCTCG < 41bp 1 0.135736007590217 1 0.189686477184296 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55049773 chr20:55049793 nonsynonymous SNV 0.999 0 41 hm5C_associated_SNPs_45600 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44375 DeepMRMD:1;iRNA_m5C:0.999536712157815 44376 chr1 22336319 22336319 1 + G A UCEC 22336303 + 22336283 22336323 41 GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTC GCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCAAGTC < 41bp 1 0.171428780278848 1 0.201912462711334 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336303 chr1:22336319 nonsynonymous SNV 0.129 3 37 hm5C_associated_SNPs_45601 0 0 0 0 1 Endoplasmic reticulum 1 0.500231636386122 1 0.999536727227756 hm5C_site_44376 DeepMRMD:1;iRNA_m5C:0.999536727227756 44377 chr1 22336319 22336319 1 + G A UCEC 22336304 + 22336284 22336324 41 CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCT CTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCAAGTCT < 41bp 1 0.297513290009553 1 0.285536766052246 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336304 chr1:22336319 nonsynonymous SNV 0.129 3 36 hm5C_associated_SNPs_45602 0 0 0 0 1 Endoplasmic reticulum 1 0.500231638148522 1 0.999536723702956 hm5C_site_44377 DeepMRMD:1;iRNA_m5C:0.999536723702956 44378 chr1 22336319 22336319 1 + G A UCEC 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCCACGGTGTTCACTCAAGTCTCCG < 41bp 1 0.413445888247577 1 0.377671360969543 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336319 nonsynonymous SNV 0.129 3 33 hm5C_associated_SNPs_45604 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643905565 1 0.99953671218887 hm5C_site_44378 DeepMRMD:1;iRNA_m5C:0.99953671218887 44379 chr1 22336319 22336319 1 + G A UCEC 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCCACGGTGTTCACTCAAGTCTCCGCCTTCAT < 41bp 1 0.29052568025871 1 0.00860661268234253 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336319 nonsynonymous SNV 0.129 3 26 hm5C_associated_SNPs_45605 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643922313 1 0.999536712155373 hm5C_site_44379 DeepMRMD:1;iRNA_m5C:0.999536712155373 44380 chr1 22336319 22336319 1 + G A UCEC 22336323 + 22336303 22336343 41 CCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGAT CCCACGGTGTTCACTCAAGTCTCCGCCTTCATCGACTGGAT < 41bp 1 0.665514582346039 1 0.130709260702133 experiment 0.668970835307923 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336323 chr1:22336319 nonsynonymous SNV 0.129 3 17 hm5C_associated_SNPs_45607 0 0 0 0 1 Endoplasmic reticulum 1 0.500148499471118 1 0.999703001057764 hm5C_site_44380 DeepMRMD:1;iRNA_m5C:0.999703001057764 44381 chr1 22336319 22336319 1 + G A UCEC 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTCAAGTCTCCGCCTTCATCGACTGGATTGA < 41bp 1 0.353296755900086 1 0.0302415788173676 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336319 nonsynonymous SNV 0.129 3 14 hm5C_associated_SNPs_45608 0 0 0 0 1 Endoplasmic reticulum 1 0.50024232335137 1 0.99951535329726 hm5C_site_44381 DeepMRMD:1;iRNA_m5C:0.99951535329726 44382 chr1 22336319 22336319 1 + G A UCEC 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTCAAGTCTCCGCCTTCATCGACTGGATTGAGGA < 41bp 1 0.356151970397585 1 0.549148082733154 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336319 nonsynonymous SNV 0.129 3 11 hm5C_associated_SNPs_45609 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643923726 0.901703834533692 0.999536712152548 hm5C_site_44382 DeepMRMD:0.901703834533692;iRNA_m5C:0.999536712152548 44383 chr1 22336319 22336319 1 + G A UCEC 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTCAAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT < 41bp 1 0.333047857920815 1 0.190758347511292 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336319 nonsynonymous SNV 0.129 3 8 hm5C_associated_SNPs_45610 0 0 0 0 1 Endoplasmic reticulum 1 0.500231641468075 1 0.99953671706385 hm5C_site_44383 DeepMRMD:1;iRNA_m5C:0.99953671706385 44384 chr1 22336319 22336319 1 + G A UCEC 22336335 + 22336315 22336355 41 ACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG ACTCAAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG < 41bp 1 0.626457568932732 1 0.462703347206116 experiment 0.747084862134536 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336335 chr1:22336319 nonsynonymous SNV 0.129 3 5 hm5C_associated_SNPs_45611 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44384 DeepMRMD:1;iRNA_m5C:0.999536712157815 44385 chrX 100880751 100880751 1 + T C UCEC 100880745 + 100880725 100880765 41 TTCAGCGGGAAATGAAGAAACCAAACTTCAGGTTCTGAAAC TTCAGCGGGAAATGAAGAAACCAAACCTCAGGTTCTGAAAC < 41bp 1 0.385756613538357 1 0.0830093920230865 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880745 chrX:100880751 nonsynonymous SNV 1.000 1 27 hm5C_associated_SNPs_45612 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643963352 1 0.999536712073297 hm5C_site_44385 DeepMRMD:1;iRNA_m5C:0.999536712073297 44386 chrX 100880751 100880751 1 + T C UCEC 100880746 + 100880726 100880766 41 TCAGCGGGAAATGAAGAAACCAAACTTCAGGTTCTGAAACT TCAGCGGGAAATGAAGAAACCAAACCTCAGGTTCTGAAACT < 41bp 1 0.242395070586319 1 0.256092429161072 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880746 chrX:100880751 nonsynonymous SNV 1.000 1 26 hm5C_associated_SNPs_45613 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44386 DeepMRMD:1;iRNA_m5C:0.999536712157815 44387 chrX 100880751 100880751 1 + T C UCEC 100880750 + 100880730 100880770 41 CGGGAAATGAAGAAACCAAACTTCAGGTTCTGAAACTCCTT CGGGAAATGAAGAAACCAAACCTCAGGTTCTGAAACTCCTT < 41bp 1 0.317768968136629 1 0.0931900143623352 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880750 chrX:100880751 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_45614 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44387 DeepMRMD:1;iRNA_m5C:0.999536712157815 44388 chrX 100880751 100880751 1 + T C UCEC 100880753 + 100880733 100880773 41 GAAATGAAGAAACCAAACTTCAGGTTCTGAAACTCCTTTTG GAAATGAAGAAACCAAACCTCAGGTTCTGAAACTCCTTTTG < 41bp 1 0.696984290934891 1 0.651769757270813 experiment 0.606031418130218 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880753 chrX:100880751 nonsynonymous SNV 1.000 1 19 hm5C_associated_SNPs_45615 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643920587 0.696460485458374 0.999536712158826 hm5C_site_44388 DeepMRMD:0.696460485458374;iRNA_m5C:0.999536712158826 44389 chrX 100880751 100880751 1 + T C UCEC 100880765 + 100880745 100880785 41 CCAAACTTCAGGTTCTGAAACTCCTTTTGAATTTGGCTGAA CCAAACCTCAGGTTCTGAAACTCCTTTTGAATTTGGCTGAA < 41bp 1 0.606898114065914 1 0.187953174114227 experiment 0.786203771868173 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880765 chrX:100880751 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_45616 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643919503 1 0.999536712160994 hm5C_site_44389 DeepMRMD:1;iRNA_m5C:0.999536712160994 Type 2 diabetes 44390 chrX 100880751 100880751 1 + T C UCEC 100880767 + 100880747 100880787 41 AAACTTCAGGTTCTGAAACTCCTTTTGAATTTGGCTGAAAA AAACCTCAGGTTCTGAAACTCCTTTTGAATTTGGCTGAAAA < 41bp 1 0.0388145955181732 1 0.0459762811660767 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880767 chrX:100880751 nonsynonymous SNV 1.000 1 5 hm5C_associated_SNPs_45617 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921932 1 0.999536712156136 hm5C_site_44390 DeepMRMD:1;iRNA_m5C:0.999536712156136 44391 chrX 149896178 149896178 1 + T C UCEC 149896183 + 149896163 149896203 41 ATTTTATCCTTGATGTTCCCCTTGGAGTGATCAGCAGAGTG ATTTTATCCTTGATGCTCCCCTTGGAGTGATCAGCAGAGTG < 41bp 1 0.300782947754118 1 0.037448912858963 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149896183 chrX:149896178 nonsynonymous SNV 0.994 1 16 hm5C_associated_SNPs_45618 0 0 1 0 2 Ribosome 1 0.50023164392112 1 0.99953671215776 hm5C_site_44391 DeepMRMD:1;iRNA_m5C:0.99953671215776 44392 chr2 71297699 71297699 1 + C T UCEC 71297704 + 71297684 71297724 41 GCAGAAGCAGATGGACTGAGCACAAACCACTGGGTAAAAAC GCAGAAGCAGATGGATTGAGCACAAACCACTGGGTAAAAAC < 41bp 1 0.589988907567841 1 0.21455904841423 experiment 0.820022184864319 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NAGK ENSG00000124357 CDS Human protein_coding chr2:71297704 chr2:71297699 synonymous SNV . 0 16 hm5C_associated_SNPs_45619 0 0 1 2 2 chromatin 1 0.500231649231154 1 0.999536701537692 hm5C_site_44392 DeepMRMD:1;iRNA_m5C:0.999536701537692 44393 chrX 152770755 152770755 1 + A G UCEC 152770746 + 152770726 152770766 41 CTGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCC CTGACACCACGCTGCTGGACCTGCAGAACGACGACATCTCC < 41bp 1 0.660034558218777 1 0.502148151397705 experiment 0.679930883562447 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control BGN ENSG00000182492 CDS Human protein_coding chrX:152770746 chrX:152770755 nonsynonymous SNV 0.970 4 30 hm5C_associated_SNPs_45621 0 0 0 0 2 Cytosol 1 0.500231643053857 0.99570369720459 0.999536713892286 hm5C_site_44393 DeepMRMD:0.99570369720459;iRNA_m5C:0.999536713892286 44394 chr2 109347893 109347893 1 + A G UCEC 109347873 + 109347853 109347893 41 ACTGATGGAAGAGCAAAATACTGGCTTGAAAGAGCAGCCAA ACTGATGGAAGAGCAAAATACTGGCTTGAAAGAGCAGCCAG < 41bp 1 0.675467122974801 1 0.267316818237305 experiment 0.649065754050398 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347873 chr2:109347893 nonsynonymous SNV 1.000 0 41 hm5C_associated_SNPs_45622 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_44394 DeepMRMD:1;iRNA_m5C:0.999536712157815 44395 chr2 109347893 109347893 1 + A G UCEC 109347887 + 109347867 109347907 41 AAAATACTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAA AAAATACTGGCTTGAAAGAGCAGCCAGACTTTTCCCAGGAA < 41bp 1 0.204659481910533 1 0.520636916160583 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347887 chr2:109347893 nonsynonymous SNV 1.000 0 27 hm5C_associated_SNPs_45623 0 0 1 0 1 Nucleus 1 0.500231643921092 0.958726167678834 0.999536712157815 hm5C_site_44395 DeepMRMD:0.958726167678834;iRNA_m5C:0.999536712157815 44396 chr2 109347893 109347893 1 + A G UCEC 109347890 + 109347870 109347910 41 ATACTGGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAAGTC ATACTGGCTTGAAAGAGCAGCCAGACTTTTCCCAGGAAGTC < 41bp 1 0.173612187508738 1 0.372537910938263 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347890 chr2:109347893 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_45624 0 0 1 0 1 Nucleus 1 0.500231643457115 1 0.99953671308577 hm5C_site_44396 DeepMRMD:1;iRNA_m5C:0.99953671308577 44397 chr2 109347893 109347893 1 + A G UCEC 109347895 + 109347875 109347915 41 GGCTTGAAAGAGCAGCCAAACTTTTCCCAGGAAGTCCTGCA GGCTTGAAAGAGCAGCCAGACTTTTCCCAGGAAGTCCTGCA < 41bp 1 0.0410987527879994 1 0.0383966565132141 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347895 chr2:109347893 nonsynonymous SNV 1.000 0 19 hm5C_associated_SNPs_45625 0 0 1 0 1 Nucleus 1 0.500231651084897 1 0.999536697830206 hm5C_site_44397 DeepMRMD:1;iRNA_m5C:0.999536697830206 44398 chr2 109347893 109347893 1 + A G UCEC 109347901 + 109347881 109347921 41 AAAGAGCAGCCAAACTTTTCCCAGGAAGTCCTGCAATTTAT AAAGAGCAGCCAGACTTTTCCCAGGAAGTCCTGCAATTTAT < 41bp 1 0.313475235705395 1 0.419338285923004 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347901 chr2:109347893 nonsynonymous SNV 1.000 0 13 hm5C_associated_SNPs_45626 0 0 1 0 1 Nucleus 1 0.500231642978783 1 0.999536714042434 hm5C_site_44398 DeepMRMD:1;iRNA_m5C:0.999536714042434 44399 chr2 109347893 109347893 1 + A G UCEC 109347902 + 109347882 109347922 41 AAGAGCAGCCAAACTTTTCCCAGGAAGTCCTGCAATTTATA AAGAGCAGCCAGACTTTTCCCAGGAAGTCCTGCAATTTATA < 41bp 1 0.675387504012538 1 0.834830820560455 experiment 0.649224991974924 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347902 chr2:109347893 nonsynonymous SNV 1.000 0 12 hm5C_associated_SNPs_45627 0 0 1 0 1 Nucleus 1 0.500231643948093 0.33033835887909 0.999536712103814 hm5C_site_44399 DeepMRMD:0.33033835887909;iRNA_m5C:0.999536712103814 44400 chr2 109347893 109347893 1 + A G UCEC 109347910 + 109347890 109347930 41 CCAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAG CCAGACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAG < 41bp 1 0.0469248034494856 1 0.163049012422562 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347910 chr2:109347893 nonsynonymous SNV 1.000 0 4 hm5C_associated_SNPs_45628 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44400 DeepMRMD:1;iRNA_m5C:0.999536712157815 44401 chr2 109347893 109347893 1 + A G UCEC 109347911 + 109347891 109347931 41 CAAACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAGG CAGACTTTTCCCAGGAAGTCCTGCAATTTATAAACTAAAGG < 41bp 1 0.302294654947763 1 0.240668565034866 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109347911 chr2:109347893 nonsynonymous SNV 1.000 0 3 hm5C_associated_SNPs_45629 0 0 1 0 1 Nucleus 1 0.500231643945663 1 0.999536712108673 hm5C_site_44401 DeepMRMD:1;iRNA_m5C:0.999536712108673 44402 chr1 198222179 198222179 1 + C A UCEC 198222182 + 198222162 198222202 41 AATTACAGAAGGCCTTACGACCGGATATGGGCTATAATACA AATTACAGAAGGCCTTAAGACCGGATATGGGCTATAATACA < 41bp 1 0.670548567343045 1 0.645240187644958 experiment 0.65890286531391 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEK7 ENSG00000151414 CDS Human protein_coding chr1:198222182 chr1:198222179 synonymous SNV . 0 18 hm5C_associated_SNPs_45630 0 0 1 0 1 Nucleus 1 0.500231644165971 0.709519624710084 0.999536711668058 hm5C_site_44402 DeepMRMD:0.709519624710084;iRNA_m5C:0.999536711668058 44403 chr1 198222179 198222179 1 + C A UCEC 198222183 + 198222163 198222203 41 ATTACAGAAGGCCTTACGACCGGATATGGGCTATAATACAT ATTACAGAAGGCCTTAAGACCGGATATGGGCTATAATACAT < 41bp 1 0.466894797553177 1 0.531422555446625 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NEK7 ENSG00000151414 CDS Human protein_coding chr1:198222183 chr1:198222179 synonymous SNV . 0 17 hm5C_associated_SNPs_45631 0 0 1 0 1 Nucleus 1 0.500231643925019 0.93715488910675 0.999536712149961 hm5C_site_44403 DeepMRMD:0.93715488910675;iRNA_m5C:0.999536712149961 44404 chr8 22054868 22054868 1 + T C UCEC 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCCGAGGTCATCACCTCCCAGTACAACAACACGCGCG < 41bp 1 0.17396828294462 1 0.314634561538696 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054868 nonsynonymous SNV 1.000 3 36 hm5C_associated_SNPs_45632 0 0 1 0 1 Endoplasmic reticulum 1 0.500231645981922 1 0.999536708036156 hm5C_site_44404 DeepMRMD:1;iRNA_m5C:0.999536708036156 44405 chr2 120005520 120005520 1 + C T UCEC 120005510 + 120005490 120005530 41 GCCAGAACAAGTTCTTCAAGCTGCCCGTGTCCGTGGTCAAC GCCAGAACAAGTTCTTCAAGCTGCCCGTGTTCGTGGTCAAC < 41bp 1 0.251408166328349 1 0.025077223777771 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120005510 chr2:120005520 nonsynonymous SNV 0.974 0 31 hm5C_associated_SNPs_45633 0 0 1 0 0 Ribosome 1 0.50024806078578 1 0.999503878428439 hm5C_site_44405 DeepMRMD:1;iRNA_m5C:0.999503878428439 44406 chr7 149576625 149576625 1 + C T UCEC 149576622 + 149576602 149576642 41 CTGGGGAGCCCTGGGCACAGCAGCGGCCGAGGGGATGTCCT CTGGGGAGCCCTGGGCACAGCAGTGGCCGAGGGGATGTCCT < 41bp 1 0.660247424295155 1 0.656983137130737 experiment 0.67950515140969 Functional Loss 31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149576622 chr7:149576625 synonymous SNV . 0 24 hm5C_associated_SNPs_45634 0 0 1 0 0 Ribosome 1 0.500231643917212 0.686033725738526 0.999536712165575 hm5C_site_44406 DeepMRMD:0.686033725738526;iRNA_m5C:0.999536712165575 44407 chr15 64967523 64967523 1 + C T UCEC 64967515 + 64967495 64967535 41 AAACACTACCCCTACTCAGCCCCTGACTCCCTTACATGTGG AAACACTACCCCTACTCAGCCCCTGACTTCCTTACATGTGG < 41bp 1 0.0442570056973395 1 0.0865764021873474 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF609 ENSG00000180357 CDS Human protein_coding chr15:64967515 chr15:64967523 nonsynonymous SNV 0.998 2 29 hm5C_associated_SNPs_45635 0 0 1 0 0 Endoplasmic reticulum 1 0.500231640415213 1 0.999536719169575 hm5C_site_44407 DeepMRMD:1;iRNA_m5C:0.999536719169575 44408 chr1 171527202 171527202 1 + A G UCEC 171527220 + 171527200 171527240 41 ACAGTCACATGGCACTCTGACAGCTGAATTATGGGATAACA ACGGTCACATGGCACTCTGACAGCTGAATTATGGGATAACA < 41bp 1 0.313266284874842 1 0.486650735139847 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171527220 chr1:171527202 nonsynonymous SNV 0.998 1 3 hm5C_associated_SNPs_45636 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44408 DeepMRMD:1;iRNA_m5C:0.999536712157815 44409 chr2 170592364 170592364 1 + C A UCEC 170592378 + 170592358 170592398 41 TGGAGGCTATTACTGGCATCCTTTATCAGAGGTTCACATAT TGGAGGATATTACTGGCATCCTTTATCAGAGGTTCACATAT < 41bp 1 0.354342928499143 1 0.717084050178528 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KLHL23;PHOSPHO2-KLHL23 ENSG00000213160 CDS Human protein_coding chr2:170592378 chr2:170592364 synonymous SNV . 0 7 hm5C_associated_SNPs_45637 0 0 1 0 0 unknown 1 0.500231643891008 0.565831899642944 0.999536712217984 hm5C_site_44409 DeepMRMD:0.565831899642944;iRNA_m5C:0.999536712217984 44410 chrX 56592134 56592134 1 + G A UCEC 56592147 + 56592127 56592167 41 AGGAGGCGACATCAATGCAGCCATTGAAAGGCTGCTGGGCT AGGAGGCAACATCAATGCAGCCATTGAAAGGCTGCTGGGCT < 41bp 1 0.0532217300533258 1 0.0783413946628571 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56592147 chrX:56592134 nonsynonymous SNV 0.997 4 8 hm5C_associated_SNPs_45638 0 0 1 0 0 nucleus 1 0.500231643921124 1 0.999536712157753 hm5C_site_44410 DeepMRMD:1;iRNA_m5C:0.999536712157753 44411 chr16 70589097 70589097 1 + C T UCEC 70589086 + 70589066 70589106 41 TTGCCCTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGAT TTGCCCTGACAGGAGGAGAGCTGGTCTATTTTGAGATGGAT < 41bp 1 0.245480611443419 1 0.166226148605347 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589086 chr16:70589097 synonymous SNV . 0 32 hm5C_associated_SNPs_45639 0 0 1 0 1 Cytosol 1 0.500231644380647 1 0.999536711238705 hm5C_site_44411 DeepMRMD:1;iRNA_m5C:0.999536711238705 44412 chr16 70589097 70589097 1 + C T UCEC 70589091 + 70589071 70589111 41 CTGACAGGAGGAGAGCTGGTCTATTTCGAGATGGATCCTGT CTGACAGGAGGAGAGCTGGTCTATTTTGAGATGGATCCTGT < 41bp 1 0.117828079560938 1 0.0688834190368652 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70589091 chr16:70589097 synonymous SNV . 0 27 hm5C_associated_SNPs_45640 0 0 1 0 1 Cytosol 1 0.500231644056553 1 0.999536711886895 hm5C_site_44412 DeepMRMD:1;iRNA_m5C:0.999536711886895 44413 chr17 65735656 65735656 1 + C T UCEC 65735673 + 65735653 65735693 41 TTCCTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT TTCTTGTACCTGAAGTGTAGCGAAAATGCTACTATGACTCT < 41bp 1 0.647361505634474 1 0.720992982387543 experiment 0.705276988731052 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65735673 chr17:65735656 synonymous SNV . 0 4 hm5C_associated_SNPs_45641 0 0 1 0 2 Nucleus 1 0.500231643776721 0.558014035224914 0.999536712446558 hm5C_site_44413 DeepMRMD:0.558014035224914;iRNA_m5C:0.999536712446558 44414 chr11 9459826 9459826 1 + G T UCEC 9459830 + 9459810 9459850 41 AGCTGAAGATGATGATGAAACCGGTAAGGGATTTTCAATGG AGCTGAAGATGATGATTAAACCGGTAAGGGATTTTCAATGG < 41bp 1 0.630512647940382 1 0.149759918451309 experiment 0.738974704119237 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IPO7 ENSG00000205339 CDS Human protein_coding chr11:9459830 chr11:9459826 stopgain 0.997 0 17 hm5C_associated_SNPs_45642 0 0 1 0 1 Cytosol 1 0.500231643921098 1 0.999536712157804 hm5C_site_44414 DeepMRMD:1;iRNA_m5C:0.999536712157804 44415 chr9 96411478 96411478 1 + G A UCEC 96411460 + 96411440 96411480 41 GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCGAG GCACCAACCGCAAGCGGGTCCTCAACGTCACCAACCTCAAG < 41bp 1 0.466195741183288 1 0.312393367290497 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF2 ENSG00000197724 CDS Human protein_coding chr9:96411460 chr9:96411478 nonsynonymous SNV 0.992 4 39 hm5C_associated_SNPs_45644 0 0 1 0 1 chromatin 1 0.500238268146377 1 0.999523463707246 hm5C_site_44415 DeepMRMD:1;iRNA_m5C:0.999523463707246 44416 chr2 11053270 11053270 1 + C T UCEC 11053264 + 11053244 11053284 41 GCTGGTTCACCCTGGAGTACCTGCTGCGCCTCTTCTCGTCA GCTGGTTCACCCTGGAGTACCTGCTGTGCCTCTTCTCGTCA < 41bp 1 0.640288695232674 1 0.0580415427684784 experiment 0.719422609534653 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11053264 chr2:11053270 nonsynonymous SNV 1.000 5 27 hm5C_associated_SNPs_45645 0 0 0 0 0 exosome 1 0.500231212150112 1 0.999537575699776 hm5C_site_44416 DeepMRMD:1;iRNA_m5C:0.999537575699776 44417 chr13 77570182 77570182 1 + G A UCEC 77570189 + 77570169 77570209 41 TGGTGTAATCAAGGCGCTGCCTGCTTTTTTGAGGGAATTGA TGGTGTAATCAAGACGCTGCCTGCTTTTTTGAGGGAATTGA < 41bp 1 0.599364021987234 1 0.123994618654251 experiment 0.801271956025531 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570189 chr13:77570182 nonsynonymous SNV 0.951 5 14 hm5C_associated_SNPs_45647 0 0 1 0 1 Endoplasmic reticulum 1 0.500231649372836 1 0.999536701254329 hm5C_site_44417 DeepMRMD:1;iRNA_m5C:0.999536701254329 44418 chr22 38028062 38028062 1 + G T UCEC 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTTCCCGGGACCCACTGCCAGGGCGCTCCGACGTG < 41bp 1 0.36547567972306 1 0.119824886322021 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028062 nonsynonymous SNV 0.921 3 9 hm5C_associated_SNPs_45649 0 0 1 0 1 chromatin 1 0.500231644827779 1 0.999536710344441 hm5C_site_44418 DeepMRMD:1;iRNA_m5C:0.999536710344441 44419 chr1 162469799 162469799 1 + G A UCEC 162469797 + 162469777 162469817 41 TCTCCAAATGTGCCATCACGCTGTCTGTTGCTTGAACTCCT TCTCCAAATGTGCCATCACGCTATCTGTTGCTTGAACTCCT < 41bp 1 0.217926957975868 1 0.368896484375 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162469797 chr1:162469799 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_45650 0 0 1 0 1 chromatin 1 0.500231643920896 1 0.999536712158207 hm5C_site_44419 DeepMRMD:1;iRNA_m5C:0.999536712158207 44420 chr3 47891205 47891205 1 + C T UCEC 47891200 + 47891180 47891220 41 CAGCGTCTTCGTCCGGGACTCCTCTCAGGTGCACCCGCTAG CAGCGTCTTCGTCCGGGACTCCTCTTAGGTGCACCCGCTAG < 41bp 1 0.142359691022515 1 0.283894032239914 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DHX30 ENSG00000132153 CDS Human protein_coding chr3:47891200 chr3:47891205 stopgain 0.996 0 26 hm5C_associated_SNPs_45651 0 0 1 0 1 Cytosol 1 0.50023164392109 1 0.99953671215782 hm5C_site_44420 DeepMRMD:1;iRNA_m5C:0.99953671215782 44421 chr8 104342121 104342121 1 + G C UCEC 104342108 + 104342088 104342128 41 CAAGAAACTTTGACAGAAATCCAAACCTCACCAGAAACATC CAAGAAACTTTGACAGAAATCCAAACCTCACCACAAACATC < 41bp 1 0.357427720917873 1 0.0965209603309631 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FZD6 ENSG00000164930 CDS Human protein_coding chr8:104342108 chr8:104342121 nonsynonymous SNV 0.767 0 34 hm5C_associated_SNPs_45652 0 0 1 0 0 Ribosome 1 0.500231597193036 1 0.999536805613927 hm5C_site_44421 DeepMRMD:1;iRNA_m5C:0.999536805613927 44422 chr11 61722648 61722648 1 + G C UCEC 61722649 + 61722629 61722669 41 ATTGCGACAGCTACATCCAGCTCATCCCCATTTCCTTCGTG ATTGCGACAGCTACATCCACCTCATCCCCATTTCCTTCGTG < 41bp 1 0.218623761968681 1 0.0899466872215271 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61722649 chr11:61722648 nonsynonymous SNV 0.998 5 20 hm5C_associated_SNPs_45654 0 0 0 0 1 chromatin 1 0.500231647132192 1 0.999536705735616 hm5C_site_44422 DeepMRMD:1;iRNA_m5C:0.999536705735616 44423 chr22 39918062 39918062 1 + T A UCEC 39918059 + 39918039 39918079 41 TTCCCCTTTCCCCAGGGGTCCTGTCCTCCACTCCAGATCAT TTCCCCTTTCCCCAGGGGTCCTGACCTCCACTCCAGATCAT < 41bp 1 0.306710607841341 1 0.0521968305110931 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ATF4 ENSG00000128272 CDS Human protein_coding chr22:39918059 chr22:39918062 nonsynonymous SNV 0.940 0 24 hm5C_associated_SNPs_45655 0 0 1 0 0 Ribosome 1 0.50023164392109 1 0.99953671215782 hm5C_site_44423 DeepMRMD:1;iRNA_m5C:0.99953671215782 44424 chr19 17213061 17213061 1 + C T UCEC 17213070 + 17213050 17213090 41 ATCTACACGTACGCGGGGAGCATCCTGGTGGCCATCAACCC ATCTACACGTATGCGGGGAGCATCCTGGTGGCCATCAACCC < 41bp 1 0.0503021490120316 1 0.0718804001808167 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYO9B ENSG00000099331 CDS Human protein_coding chr19:17213070 chr19:17213061 synonymous SNV . 0 12 hm5C_associated_SNPs_45656 0 0 1 0 0 Nucleus 1 0.50023163565518 1 0.99953672868964 hm5C_site_44424 DeepMRMD:1;iRNA_m5C:0.99953672868964 44425 chr1 39776663 39776663 1 + A G UCEC 39776662 + 39776642 39776682 41 GGACAATGCATTAAGGATTGCAGAGCAAGAGGTAAGCCCTA GGACAATGCATTAAGGATTGCGGAGCAAGAGGTAAGCCCTA < 41bp 1 0.220135101919957 1 0.690390586853027 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39776662 chr1:39776663 synonymous SNV . 0 22 hm5C_associated_SNPs_45657 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 0.619218826293946 0.999536712157815 hm5C_site_44425 DeepMRMD:0.619218826293946;iRNA_m5C:0.999536712157815 44426 chr17 73058300 73058300 1 + C T UCEC 73058313 + 73058293 73058333 41 AATAATTCTACCAATGGCATCGTCATAGAGCCGAGCGAAAA AATAATTTTACCAATGGCATCGTCATAGAGCCGAGCGAAAA < 41bp 1 0.37569210928544 1 0.465017944574356 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73058313 chr17:73058300 nonsynonymous SNV 1.000 3 8 hm5C_associated_SNPs_45658 0 0 1 0 2 Cytosol 1 0.500231643822896 1 0.999536712354208 hm5C_site_44426 DeepMRMD:1;iRNA_m5C:0.999536712354208 44427 chr19 1395395 1395395 1 + C T UCEC 1395382 + 1395362 1395402 41 AAGCGAGACTGAGGCAAGGTCCCTGCAGGCTGCCCACCTAC AAGCGAGACTGAGGCAAGGTCCCTGCAGGCTGCTCACCTAC < 41bp 1 0.435536929564543 1 0.340341538190842 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS7 ENSG00000115286 CDS Human protein_coding chr19:1395382 chr19:1395395 nonsynonymous SNV 0.499 4 34 hm5C_associated_SNPs_45659 0 0 1 0 1 chromatin 1 0.500231623015528 1 0.999536753968943 hm5C_site_44427 DeepMRMD:1;iRNA_m5C:0.999536753968943 44428 chr19 1395395 1395395 1 + C T UCEC 1395383 + 1395363 1395403 41 AGCGAGACTGAGGCAAGGTCCCTGCAGGCTGCCCACCTACG AGCGAGACTGAGGCAAGGTCCCTGCAGGCTGCTCACCTACG < 41bp 1 0.190442625085883 1 0.679533123970032 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NDUFS7 ENSG00000115286 CDS Human protein_coding chr19:1395383 chr19:1395395 nonsynonymous SNV 0.499 4 33 hm5C_associated_SNPs_45660 0 0 1 0 1 chromatin 1 0.500231643922885 0.640933752059936 0.99953671215423 hm5C_site_44428 DeepMRMD:0.640933752059936;iRNA_m5C:0.99953671215423 44429 chr7 101821774 101821774 1 + G A UCEC 101821775 + 101821755 101821795 41 GCCATAGAGGTGCTGACCCGCTCCAGCCTAGAAGTTGAGTT GCCATAGAGGTGCTGACCCACTCCAGCCTAGAAGTTGAGTT < 41bp 1 0.530897632459439 1 0.846901178359985 experiment 0.938204735081122 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CUX1 ENSG00000257923 CDS Human protein_coding chr7:101821775 chr7:101821774 nonsynonymous SNV 0.998 0 20 hm5C_associated_SNPs_45662 0 0 1 0 2 Exosome 1 0.500231644335138 0.30619764328003 0.999536711329724 hm5C_site_44429 DeepMRMD:0.30619764328003;iRNA_m5C:0.999536711329724 44430 chr2 232573441 232573441 1 + A G UCEC 232573427 + 232573407 232573447 41 GTGCCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCG GTGCCCCACCATGTCAGACGCAGCCGTAGACACCGGCTCCG < 41bp 1 0.675215065750528 1 0.18489795923233 experiment 0.649569868498944 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232573427 chr2:232573441 nonsynonymous SNV 0.998 0 35 hm5C_associated_SNPs_45663 0 0 1 0 1 Ribosome 1 0.500231405655806 1 0.999537188688387 hm5C_site_44430 DeepMRMD:1;iRNA_m5C:0.999537188688387 44431 chr2 232573441 232573441 1 + A G UCEC 232573430 + 232573410 232573450 41 CCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCGAAA CCCCACCATGTCAGACGCAGCCGTAGACACCGGCTCCGAAA < 41bp 1 0.52167543702631 1 0.318287968635559 experiment 0.95664912594738 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTMA ENSG00000187514 CDS Human protein_coding chr2:232573430 chr2:232573441 nonsynonymous SNV 0.998 0 32 hm5C_associated_SNPs_45664 0 0 1 0 1 Ribosome 1 0.500231643934204 1 0.999536712131592 hm5C_site_44431 DeepMRMD:1;iRNA_m5C:0.999536712131592 44432 chr2 232573441 232573441 1 + A G UCEC 232573443 + 232573423 232573463 41 GACGCAGCCGTAGACACCAGCTCCGAAATCACCACCAAGGT GACGCAGCCGTAGACACCGGCTCCGAAATCACCACCAAGGT < 41bp 1 0.589866046813538 1 0.372251391410828 experiment 0.820267906372925 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232573443 chr2:232573441 nonsynonymous SNV 0.998 0 19 hm5C_associated_SNPs_45666 0 0 1 0 1 Ribosome 1 0.500231643918599 1 0.999536712162801 hm5C_site_44432 DeepMRMD:1;iRNA_m5C:0.999536712162801 44433 chr2 232573441 232573441 1 + A G UCEC 232573445 + 232573425 232573465 41 CGCAGCCGTAGACACCAGCTCCGAAATCACCACCAAGGTGA CGCAGCCGTAGACACCGGCTCCGAAATCACCACCAAGGTGA < 41bp 1 0.654322420304273 1 0.177597880363464 experiment 0.691355159391454 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232573445 chr2:232573441 nonsynonymous SNV 0.998 0 17 hm5C_associated_SNPs_45667 0 0 1 0 1 Ribosome 1 0.500231643875749 1 0.999536712248502 hm5C_site_44433 DeepMRMD:1;iRNA_m5C:0.999536712248502 44434 chr2 232573441 232573441 1 + A G UCEC 232573457 + 232573437 232573477 41 CACCAGCTCCGAAATCACCACCAAGGTGAGGCTGGACGCCG CACCGGCTCCGAAATCACCACCAAGGTGAGGCTGGACGCCG < 41bp 1 0.470034290756717 1 0.352903604507446 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PTMA ENSG00000187514 CDS Human protein_coding chr2:232573457 chr2:232573441 nonsynonymous SNV 0.998 0 5 hm5C_associated_SNPs_45669 0 0 1 0 1 Ribosome 1 0.50023075832682 1 0.99953848334636 hm5C_site_44434 DeepMRMD:1;iRNA_m5C:0.99953848334636 44435 chr5 140573648 140573648 1 + C T UCEC 140573658 + 140573638 140573678 41 TCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAGGTC TCCATCAACGTGGACAACGGCCACCTGTTCGCCCTCAGGTC < 41bp 1 0.201834274063161 1 0.0472629368305206 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573658 chr5:140573648 nonsynonymous SNV 0.060 2 11 hm5C_associated_SNPs_45670 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44435 DeepMRMD:1;iRNA_m5C:0.999536712157815 44436 chr12 13232887 13232887 1 + C T UCEC 13232896 + 13232876 13232916 41 CCAAAATTGGCCGTGGGGAGCTGCGAAGATTTCTCTCTAGG CCAAAATTGGCTGTGGGGAGCTGCGAAGATTTCTCTCTAGG < 41bp 1 0.475130151022256 1 0.313832759857178 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232896 chr12:13232887 nonsynonymous SNV 1.000 3 12 hm5C_associated_SNPs_45671 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44436 DeepMRMD:1;iRNA_m5C:0.999536712157815 44437 chr16 30953728 30953728 1 + T C UCEC 30953726 + 30953706 30953746 41 GCTGGTGCTCTCTGGCTGCTCCTGGCTCTCTGTCTCTGCCC GCTGGTGCTCTCTGGCTGCTCCCGGCTCTCTGTCTCTGCCC < 41bp 1 0.689953503322409 1 0.265969306230545 experiment 0.620092993355181 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30953726 chr16:30953728 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_45672 0 0 1 0 1 chromatin 1 0.500231643921094 1 0.999536712157811 hm5C_site_44437 DeepMRMD:1;iRNA_m5C:0.999536712157811 44438 chr1 156756693 156756693 1 + A T UCEC 156756700 + 156756680 156756720 41 ACAGTGATGAGGAAGTAGCCCCCGAAAACTTTTTCTCCCTC ACAGTGATGAGGATGTAGCCCCCGAAAACTTTTTCTCCCTC < 41bp 1 0.693236513742258 1 0.454860866069794 experiment 0.613526972515484 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PRCC ENSG00000143294 CDS Human protein_coding chr1:156756700 chr1:156756693 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_45673 0 0 1 0 0 Ribosome 1 0.500231643906602 1 0.999536712186797 hm5C_site_44438 DeepMRMD:1;iRNA_m5C:0.999536712186797 44439 chr12 120876227 120876227 1 + T C UCEC 120876210 + 120876190 120876230 41 TGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCGGGGTGGC TGGAAGACTCTCACCTTCTTCGTCGCGCTCCCCGGGGCGGC < 41bp 1 0.558811836309414 1 0.364409476518631 experiment 0.882376327381173 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control COX6A1 ENSG00000111775;ENSG00000111780 CDS Human other chr12:120876210 chr12:120876227 nonsynonymous SNV 0.986 4 38 hm5C_associated_SNPs_45674 0 0 1 0 2 Ribosome 1 0.500231669130554 1 0.999536661738893 hm5C_site_44439 DeepMRMD:1;iRNA_m5C:0.999536661738893 44440 chr1 109806829 109806829 1 + G T UCEC 109806832 + 109806812 109806852 41 CACTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCC CACTGGGAGCCAGCGGGTGGCCCGGCCATGCCATTCTGTCC < 41bp 1 0.20494651671283 1 0.194817095994949 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806832 chr1:109806829 nonsynonymous SNV 0.658 3 18 hm5C_associated_SNPs_45675 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643917853 1 0.999536712164295 hm5C_site_44440 DeepMRMD:1;iRNA_m5C:0.999536712164295 44441 chr1 109806829 109806829 1 + G T UCEC 109806833 + 109806813 109806853 41 ACTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCCT ACTGGGAGCCAGCGGGTGGCCCGGCCATGCCATTCTGTCCT < 41bp 1 0.239630034049503 1 0.191503018140793 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806833 chr1:109806829 nonsynonymous SNV 0.658 3 17 hm5C_associated_SNPs_45676 0 0 0 0 0 Endoplasmic reticulum 1 0.500231544495096 1 0.999536911009808 hm5C_site_44441 DeepMRMD:1;iRNA_m5C:0.999536911009808 44442 chr1 109806829 109806829 1 + G T UCEC 109806834 + 109806814 109806854 41 CTGGGAGCCAGCGGGGGGCCCGGCCATGCCATTCTGTCCTT CTGGGAGCCAGCGGGTGGCCCGGCCATGCCATTCTGTCCTT < 41bp 1 0.313950572393795 1 0.310144662857056 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806834 chr1:109806829 nonsynonymous SNV 0.658 3 16 hm5C_associated_SNPs_45677 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643419004 1 0.999536713161993 hm5C_site_44442 DeepMRMD:1;iRNA_m5C:0.999536713161993 44443 chr20 62374329 62374329 1 + C T UCEC 62374321 + 62374301 62374341 41 AGCCTGCCGCTGGAAGAAAGCCTGCCAGCGGTTCCTGGACT AGCCTGCCGCTGGAAGAAAGCCTGCCAGTGGTTCCTGGACT < 41bp 1 0.143935144692392 1 0.143517792224884 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62374321 chr20:62374329 nonsynonymous SNV 0.991 3 29 hm5C_associated_SNPs_45679 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44443 DeepMRMD:1;iRNA_m5C:0.999536712157815 44444 chr1 36505447 36505447 1 + G T UCEC 36505465 + 36505445 36505485 41 CAGAGACCCCGACAGGAGATCATCCAGGACTTGGCCTCCAT CATAGACCCCGACAGGAGATCATCCAGGACTTGGCCTCCAT < 41bp 1 0.136891112824864 1 0.1889289021492 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGO3 ENSG00000126070 CDS Human protein_coding chr1:36505465 chr1:36505447 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_45680 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_44444 DeepMRMD:1;iRNA_m5C:0.999536712157815 44445 chr1 116942098 116942098 1 + G T UCEC 116942086 + 116942066 116942106 41 GAGCAGGCTGAGAGTGACATCATGAAGAGACAGCCCAGAAA GAGCAGGCTGAGAGTGACATCATGAAGAGACATCCCAGAAA < 41bp 1 0.67959969363048 1 0.379130750894547 experiment 0.640800612739039 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942086 chr1:116942098 nonsynonymous SNV 1.000 3 33 hm5C_associated_SNPs_45681 0 0 1 0 2 Nucleus 1 0.500231500128848 1 0.999536999742304 hm5C_site_44445 DeepMRMD:1;iRNA_m5C:0.999536999742304 44446 chr1 116942098 116942098 1 + G T UCEC 116942108 + 116942088 116942128 41 TGAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTG TGAAGAGACATCCCAGAAATCCCAAAACAGACAAACTTGTG < 41bp 1 0.412135866969688 1 0.222023785114288 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942108 chr1:116942098 nonsynonymous SNV 1.000 3 11 hm5C_associated_SNPs_45682 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44446 DeepMRMD:1;iRNA_m5C:0.999536712157815 44447 chr1 116942098 116942098 1 + G T UCEC 116942109 + 116942089 116942129 41 GAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTGA GAAGAGACATCCCAGAAATCCCAAAACAGACAAACTTGTGA < 41bp 1 0.188740101946709 1 0.367498457431793 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942109 chr1:116942098 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_45683 0 0 1 0 2 Nucleus 1 0.500231666636034 1 0.999536666727932 hm5C_site_44447 DeepMRMD:1;iRNA_m5C:0.999536666727932 44448 chr1 116942098 116942098 1 + G T UCEC 116942110 + 116942090 116942130 41 AAGAGACAGCCCAGAAATCCCAAAACAGACAAACTTGTGAA AAGAGACATCCCAGAAATCCCAAAACAGACAAACTTGTGAA < 41bp 1 0.537667435787013 1 0.506913900375366 experiment 0.924665128425973 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116942110 chr1:116942098 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_45684 0 0 1 0 2 Nucleus 1 0.500231643921092 0.986172199249268 0.999536712157815 hm5C_site_44448 DeepMRMD:0.986172199249268;iRNA_m5C:0.999536712157815 44449 chr10 4877979 4877979 1 + C T UCEC 4877959 + 4877939 4877979 41 TTGCCTCTGGACGAGAGCAACATGGTTATTCCCAGTGACAC TTGCCTCTGGACGAGAGCAACATGGTTATTCCCAGTGACAT < 41bp 1 0.587809409642635 1 0.169598788022995 experiment 0.824381180714731 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4877959 chr10:4877979 nonsynonymous SNV 0.034 4 41 hm5C_associated_SNPs_45685 0 0 1 0 1 chromatin 1 0.500231650022936 1 0.999536699954128 hm5C_site_44449 DeepMRMD:1;iRNA_m5C:0.999536699954128 44450 chr4 77661144 77661144 1 + T C UCEC 77661164 + 77661144 77661184 41 TCAGGCTCAGGCCTGGCAAGCGGGTGAAGACAAGAGATCTT CCAGGCTCAGGCCTGGCAAGCGGGTGAAGACAAGAGATCTT < 41bp 1 0.585276201075565 1 0.931592285633087 experiment 0.829447597848869 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661164 chr4:77661144 synonymous SNV . 0 1 hm5C_associated_SNPs_45686 0 0 1 0 0 Ribosome 1 0.500231643918772 0.136815428733826 0.999536712162457 hm5C_site_44450 DeepMRMD:0.136815428733826;iRNA_m5C:0.999536712162457 44451 chr16 68718529 68718529 1 + A G UCEC 68718546 + 68718526 68718566 41 TTGAAGTGACCAACGAGGCCCCTTTTGTGCTGAAGCTCCCA TTGGAGTGACCAACGAGGCCCCTTTTGTGCTGAAGCTCCCA < 41bp 1 0.0101942519537616 1 0.0561774373054504 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CDH3 ENSG00000062038 CDS Human protein_coding chr16:68718546 chr16:68718529 nonsynonymous SNV 0.274 0 4 hm5C_associated_SNPs_45687 0 0 0 0 0 Endoplasmic reticulum 1 0.500231812418463 1 0.999536375163075 hm5C_site_44451 DeepMRMD:1;iRNA_m5C:0.999536375163075 44452 chr14 58666957 58666957 1 + G T UCEC 58666954 + 58666934 58666974 41 CCATGCCGCTCTACGAGGGCCTGGGGAGCGGCGGGGAGAAG CCATGCCGCTCTACGAGGGCCTGTGGAGCGGCGGGGAGAAG < 41bp 1 0.64048828684956 1 0.147189855575562 experiment 0.719023426300879 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58666954 chr14:58666957 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_45688 0 0 1 0 1 Ribosome 1 0.500231643920899 1 0.999536712158203 hm5C_site_44452 DeepMRMD:1;iRNA_m5C:0.999536712158203 44453 chr17 4701590 4701590 1 + T C UCEC 4701572 + 4701552 4701592 41 CAGCTTTCTTCTTTTATCCACAGCTCTCGCTTTGGCCATGG CAGCTTTCTTCTTTTATCCACAGCTCTCGCTTTGGCCACGG < 41bp 1 0.441782934340011 1 0.06980961561203 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701572 chr17:4701590 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_45689 0 0 1 0 2 Ribosome 1 0.500231643921103 1 0.999536712157794 hm5C_site_44453 DeepMRMD:1;iRNA_m5C:0.999536712157794 44454 chr8 22064477 22064477 1 + G A UCEC 22064464 + 22064444 22064484 41 AAGGAGTGCACGTGGGCCATCTCCAGCACCCCCGGGCACCG AAGGAGTGCACGTGGGCCATCTCCAGCACCCCCAGGCACCG < 41bp 1 0.688152280988826 1 0.787684500217438 experiment 0.623695438022349 Functional Loss 31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|28418038;GSE74772;RNA-BisSeq;HCT116;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22064464 chr8:22064477 nonsynonymous SNV 0.987 3 34 hm5C_associated_SNPs_45690 0 0 1 0 1 Endoplasmic reticulum 1 0.500231591984487 0.424630999565124 0.999536816031026 hm5C_site_44454 DeepMRMD:0.424630999565124;iRNA_m5C:0.999536816031026 44455 chr11 830693 830693 1 + G A UCEC 830674 + 830654 830694 41 GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCGC GAGCTGGAGCTGCAGAGCCGCGAGCAGGACCTGGAACGCAC < 41bp 1 0.552380051062905 1 0.463044255971909 experiment 0.895239897874191 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830674 chr11:830693 nonsynonymous SNV 0.844 0 40 hm5C_associated_SNPs_45691 0 0 1 0 2 Cytosol 1 0.500231628380625 1 0.999536743238751 hm5C_site_44455 DeepMRMD:1;iRNA_m5C:0.999536743238751 44456 chr17 18140846 18140846 1 + G A UCEC 18140861 + 18140841 18140881 41 GCGTGGCCATCATAGACCTCCTCCAGGACCGCGAGGGCTTC GCGTGACCATCATAGACCTCCTCCAGGACCGCGAGGGCTTC < 41bp 1 0.649378329964905 1 0.87172657251358 experiment 0.70124334007019 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18140861 chr17:18140846 nonsynonymous SNV 0.814 0 6 hm5C_associated_SNPs_45692 0 0 0 0 1 Cytosol 1 0.500231643921092 0.25654685497284 0.999536712157815 hm5C_site_44456 DeepMRMD:0.25654685497284;iRNA_m5C:0.999536712157815 44457 chr17 18140846 18140846 1 + G A UCEC 18140864 + 18140844 18140884 41 TGGCCATCATAGACCTCCTCCAGGACCGCGAGGGCTTCACA TGACCATCATAGACCTCCTCCAGGACCGCGAGGGCTTCACA < 41bp 1 0.602542934471163 1 0.772955179214478 experiment 0.794914131057673 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18140864 chr17:18140846 nonsynonymous SNV 0.814 0 3 hm5C_associated_SNPs_45693 0 0 0 0 1 Cytosol 1 0.500229832438266 0.454089641571044 0.999540335123467 hm5C_site_44457 DeepMRMD:0.454089641571044;iRNA_m5C:0.999540335123467 44458 chr22 44379853 44379853 1 + A C UCEC 44379837 + 44379817 44379857 41 TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCATGCA TACCTTGGGGGACCCACAAGCATCCGCGGATTCAGCCTGCA < 41bp 1 0.267894478140338 1 0.407356292009354 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44379837 chr22:44379853 nonsynonymous SNV 0.998 1 37 hm5C_associated_SNPs_45694 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44458 DeepMRMD:1;iRNA_m5C:0.999536712157815 44459 chr7 97822947 97822947 1 + C T UCEC 97822929 + 97822909 97822949 41 GCATCCCGCTCCCGAGGGCACCGCAGACTCAGAACCAGCCA GCATCCCGCTCCCGAGGGCACCGCAGACTCAGAACCAGTCA < 41bp 1 0.579073627313099 1 0.156439751386642 experiment 0.841852745373802 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97822929 chr7:97822947 nonsynonymous SNV 0.002 0 39 hm5C_associated_SNPs_45695 0 0 0 0 0 Nucleus 1 0.500231645124693 1 0.999536709750614 hm5C_site_44459 DeepMRMD:1;iRNA_m5C:0.999536709750614 44460 chr19 35530589 35530589 1 + T A UCEC 35530583 + 35530563 35530603 41 TGAAAGCAAAGAGAACTGCACGGGCGTCCAGGTGGCCGAAT TGAAAGCAAAGAGAACTGCACGGGCGACCAGGTGGCCGAAT < 41bp 1 0.602518263347123 1 0.781973719596863 experiment 0.794963473305754 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SCN1B ENSG00000105711 CDS Human protein_coding chr19:35530583 chr19:35530589 nonsynonymous SNV 0.990 4 27 hm5C_associated_SNPs_45696 0 0 0 0 2 exosome 1 0.500231643896358 0.436052560806274 0.999536712207283 hm5C_site_44460 DeepMRMD:0.436052560806274;iRNA_m5C:0.999536712207283 44461 chr6 33374111 33374111 1 + G A UCEC 33374114 + 33374094 33374134 41 GAGGCCTGCAGTGTGGGGCCCCCCTCAGTCTTGTGGACCTG GAGGCCTGCAGTGTGGGACCCCCCTCAGTCTTGTGGACCTG < 41bp 1 0.158843175918956 1 0.0545282661914825 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33374114 chr6:33374111 nonsynonymous SNV 0.928 3 18 hm5C_associated_SNPs_45697 0 0 1 0 0 Cytosol 1 0.500231643921185 1 0.99953671215763 hm5C_site_44461 DeepMRMD:1;iRNA_m5C:0.99953671215763 44462 chr17 35346648 35346648 1 + C T UCEC 35346663 + 35346643 35346683 41 TCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT TCTATTGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCT < 41bp 1 0.640210135356261 1 0.034627377986908 experiment 0.719579729287477 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122263;BS-seq with improved protocol;Frontal cortex;Control|31061524;GSE122265;BS-seq with improved protocol;Lung;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control AATF ENSG00000108270 CDS Human other chr17:35346663 chr17:35346648 stopgain 0.995 1 6 hm5C_associated_SNPs_45698 0 0 1 0 1 chromatin 1 0.500231636820894 1 0.999536726358212 hm5C_site_44462 DeepMRMD:1;iRNA_m5C:0.999536726358212 44463 chr5 145641104 145641104 1 + T C UCEC 145641091 + 145641071 145641111 41 AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCTAATCCAA AGGTTGCTTTTAAGGGTGACCCAGAAGCAGCCCCAATCCAA < 41bp 1 0.422985446930834 1 0.367034047842026 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641091 chr5:145641104 nonsynonymous SNV 0.957 4 34 hm5C_associated_SNPs_45700 0 0 1 0 1 Nucleus 1 0.50023163871294 1 0.999536722574119 hm5C_site_44463 DeepMRMD:1;iRNA_m5C:0.999536722574119 44464 chr19 4954437 4954437 1 + C G UCEC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GGAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG < 41bp 1 0.27619192049875 1 0.548057556152344 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954437 . 0.000 0 2 hm5C_associated_SNPs_45701 0 0 0 0 2 chromatin 1 0.500231643921092 0.903884887695312 0.999536712157816 hm5C_site_44464 DeepMRMD:0.903884887695312;iRNA_m5C:0.999536712157816 44465 chr10 75551856 75551856 1 + G A UCEC 75551836 + 75551816 75551856 41 TGCTGGGCCCGGGCCCTGCCCTCTCGGCCAGGTGCCTCCCG TGCTGGGCCCGGGCCCTGCCCTCTCGGCCAGGTGCCTCCCA < 41bp 1 0.384392346003279 1 0.235008418560028 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75551836 chr10:75551856 nonsynonymous SNV 0.964 1 41 hm5C_associated_SNPs_45702 0 0 1 0 0 Cytosol 1 0.500231643922244 1 0.999536712155512 hm5C_site_44465 DeepMRMD:1;iRNA_m5C:0.999536712155512 44466 chr2 242695343 242695343 1 + C A UCEC 242695362 + 242695342 242695382 41 CCTGTGGAGCGGCTCTACGACATCGTGACTGACCTGCGCGC CATGTGGAGCGGCTCTACGACATCGTGACTGACCTGCGCGC < 41bp 1 0.503982948813679 1 0.282419264316559 experiment 0.992034102372641 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242695362 chr2:242695343 nonsynonymous SNV 0.198 5 2 hm5C_associated_SNPs_45703 0 0 1 0 1 Ribosome 1 0.500231624087498 1 0.999536751825005 hm5C_site_44466 DeepMRMD:1;iRNA_m5C:0.999536751825005 44467 chr19 50334620 50334620 1 + G A UCEC 50334624 + 50334604 50334644 41 CCCAGGAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAG CCCAGGAGGGGTGAGCAGCCCTTCCCCAGCCCAGCTGGGAG < 41bp 1 0.27026907113986 1 0.284995049238205 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334624 chr19:50334620 nonsynonymous SNV 0.648 0 17 hm5C_associated_SNPs_45704 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_44467 DeepMRMD:1;iRNA_m5C:0.999536712157815 44468 chr19 50334620 50334620 1 + G A UCEC 50334629 + 50334609 50334649 41 GAGGGGTGAGCGGCCCTTCCCCAGCCCAGCTGGGAGCCCCA GAGGGGTGAGCAGCCCTTCCCCAGCCCAGCTGGGAGCCCCA < 41bp 1 0.388648819199424 1 0.342860013246536 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50334629 chr19:50334620 nonsynonymous SNV 0.648 0 12 hm5C_associated_SNPs_45705 0 0 1 0 2 chromatin 1 0.500231643921182 1 0.999536712157635 hm5C_site_44468 DeepMRMD:1;iRNA_m5C:0.999536712157635 44469 chr8 145139715 145139715 1 + C T UCEC 145139712 + 145139692 145139732 41 TACTTGCTCCCCGGCCTCTCCCGCTTCGTCTCCATCGGCCT TACTTGCTCCCCGGCCTCTCCCGTTTCGTCTCCATCGGCCT < 41bp 1 0.133915477605935 1 0.0579718053340912 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139712 chr8:145139715 synonymous SNV . 0 24 hm5C_associated_SNPs_45706 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44469 DeepMRMD:1;iRNA_m5C:0.999536712157815 44470 chr5 74638494 74638494 1 + G C UCEC 74638509 + 74638489 74638529 41 TCATAGTGGGGACAGTGACACTGACCATCTGCATGATGTCC TCATACTGGGGACAGTGACACTGACCATCTGCATGATGTCC < 41bp 1 0.318296676653989 1 0.0974304974079132 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control HMGCR ENSG00000113161 CDS Human protein_coding chr5:74638509 chr5:74638494 nonsynonymous SNV 1.000 4 6 hm5C_associated_SNPs_45707 0 0 1 0 1 Nucleus 1 0.500628930729706 1 0.998742138540587 hm5C_site_44470 DeepMRMD:1;iRNA_m5C:0.998742138540587 44471 chr7 79842162 79842162 1 + C T UCEC 79842156 + 79842136 79842176 41 AGAAAAAATCAAAAAGAGCCCTCTCACTATATGCTATCCAG AGAAAAAATCAAAAAGAGCCCTCTCATTATATGCTATCCAG < 41bp 1 0.166634699830067 1 0.051021933555603 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842156 chr7:79842162 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_45708 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44471 DeepMRMD:1;iRNA_m5C:0.999536712157815 44472 chr2 191524447 191524447 1 + C T UCEC 191524463 + 191524443 191524483 41 CCCGCGTCCCCAAAGGAGAGCAGTGAGGCGCTGGATGCTGC CCCGTGTCCCCAAAGGAGAGCAGTGAGGCGCTGGATGCTGC < 41bp 1 0.553716253627342 1 0.336544960737228 experiment 0.892567492745315 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAB1 ENSG00000138386 CDS Human protein_coding chr2:191524463 chr2:191524447 nonsynonymous SNV 0.846 1 5 hm5C_associated_SNPs_45709 0 0 1 0 0 Cytosol 1 0.500231643921435 1 0.99953671215713 hm5C_site_44472 DeepMRMD:1;iRNA_m5C:0.99953671215713 44473 chr11 66411255 66411255 1 + G A UCEC 66411252 + 66411232 66411272 41 TATAATTACGCAGAGCAGACCCTGTCCCAGCTGCCACAAGT TATAATTACGCAGAGCAGACCCTATCCCAGCTGCCACAAGT < 41bp 1 0.0202183648054098 1 0.0367194712162018 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66411252 chr11:66411255 synonymous SNV . 0 24 hm5C_associated_SNPs_45710 0 0 1 0 0 unknown 1 0.500231635955174 1 0.999536728089652 hm5C_site_44473 DeepMRMD:1;iRNA_m5C:0.999536728089652 44474 chr11 4142938 4142938 1 + T C UCEC 4142924 + 4142904 4142944 41 AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTC AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGACCTTTTC < 41bp 1 0.614329425904609 1 0.519353806972504 experiment 0.771341148190782 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142924 chr11:4142938 synonymous SNV . 0 35 hm5C_associated_SNPs_45711 0 0 1 0 1 Nucleus 1 0.50023164391716 0.961292386054992 0.999536712165681 hm5C_site_44474 DeepMRMD:0.961292386054992;iRNA_m5C:0.999536712165681 44475 chr6 57012757 57012757 1 + G A UCEC 57012758 + 57012738 57012778 41 GAATATGTAAAACAGCACTGCATGTCTTTGGCAAGCCACAA GAATATGTAAAACAGCACTACATGTCTTTGGCAAGCCACAA < 41bp 1 0.0730381822006595 1 0.26089072227478 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZNF451 ENSG00000112200 CDS Human protein_coding chr6:57012758 chr6:57012757 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_45712 0 0 1 0 0 chromatin 1 0.500231643917034 1 0.999536712165932 hm5C_site_44475 DeepMRMD:1;iRNA_m5C:0.999536712165932 44476 chr17 37359332 37359332 1 + A G UCEC 37359316 + 37359296 37359336 41 GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGT GGAGAATGAGGATTTTGCGCCGGCTGCTCAGAAGATGCCGT < 41bp 1 0.400289641978328 1 0.273587286472321 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359316 chr17:37359332 nonsynonymous SNV 0.342 4 37 hm5C_associated_SNPs_45714 0 0 1 0 2 chromatin 1 0.500231643921213 1 0.999536712157574 hm5C_site_44476 DeepMRMD:1;iRNA_m5C:0.999536712157574 44477 chr17 37359332 37359332 1 + A G UCEC 37359319 + 37359299 37359339 41 GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAA GAATGAGGATTTTGCGCCGGCTGCTCAGAAGATGCCGTGAA < 41bp 1 0.427020526598238 1 0.115762263536453 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359319 chr17:37359332 nonsynonymous SNV 0.342 4 34 hm5C_associated_SNPs_45715 0 0 1 0 2 chromatin 1 0.50023164383609 1 0.999536712327819 hm5C_site_44477 DeepMRMD:1;iRNA_m5C:0.999536712327819 44478 chr17 37359332 37359332 1 + A G UCEC 37359322 + 37359302 37359342 41 TGAGGATTTTGCGCCGGCTGCTCAGAAGATACCGTGAATCT TGAGGATTTTGCGCCGGCTGCTCAGAAGATGCCGTGAATCT < 41bp 1 0.468340696743297 1 0.136485755443573 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359322 chr17:37359332 nonsynonymous SNV 0.342 4 31 hm5C_associated_SNPs_45716 0 0 1 0 2 chromatin 1 0.500231659836575 1 0.99953668032685 hm5C_site_44478 DeepMRMD:1;iRNA_m5C:0.99953668032685 44479 chr17 37359332 37359332 1 + A G UCEC 37359333 + 37359313 37359353 41 CGCCGGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGA CGCCGGCTGCTCAGAAGATGCCGTGAATCTAAGAAGATCGA < 41bp 1 0.194057189696321 1 0.140712738037109 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359333 chr17:37359332 nonsynonymous SNV 0.342 4 20 hm5C_associated_SNPs_45717 0 0 1 0 2 chromatin 1 0.500233967630166 1 0.999532064739667 hm5C_site_44479 DeepMRMD:1;iRNA_m5C:0.999532064739667 44480 chr12 104056696 104056696 1 + C T UCEC 104056683 + 104056663 104056703 41 GAGATCACTGCCAAAAATGGCCGAATTTACACACTGACAGG GAGATCACTGCCAAAAATGGCCGAATTTACACATTGACAGG < 41bp 1 0.182027758109263 1 0.13932928442955 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STAB2 ENSG00000136011 CDS Human protein_coding chr12:104056683 chr12:104056696 synonymous SNV . 0 34 hm5C_associated_SNPs_45719 0 0 0 0 2 nucleoplasm 1 0.500231641550155 1 0.99953671689969 hm5C_site_44480 DeepMRMD:1;iRNA_m5C:0.99953671689969 44481 chr9 116053083 116053083 1 + A G UCEC 116053079 + 116053059 116053099 41 ATCTATGGAATAAATTTCTCCCCCAATGGGTAAAATAAACA ATCTATGGAATAAATTTCTCCCCCGATGGGTAAAATAAACA < 41bp 1 0.0935292575196257 1 0.133106708526611 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116053079 chr9:116053083 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_45720 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44481 DeepMRMD:1;iRNA_m5C:0.999536712157815 44482 chr1 173819555 173819555 1 + A G UCEC 173819569 + 173819549 173819589 41 TTAATCAGACTAATGGAGACCCAAGAGGAAGATGTGGTCCT TTAATCGGACTAATGGAGACCCAAGAGGAAGATGTGGTCCT < 41bp 1 0.160073340237861 1 0.364049077033997 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DARS2 ENSG00000117593 CDS Human protein_coding chr1:173819569 chr1:173819555 nonsynonymous SNV 0.311 1 7 hm5C_associated_SNPs_45721 0 0 1 0 2 chromatin 1 0.500231701178467 1 0.999536597643067 hm5C_site_44482 DeepMRMD:1;iRNA_m5C:0.999536597643067 44483 chr1 78325049 78325049 1 + A G UCEC 78325041 + 78325021 78325061 41 GGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACA GGAGACAGTGATTTTCTTGCCAAACTTCGCTGTATTCGACA < 41bp 1 0.214024338931444 1 0.231562435626984 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78325041 chr1:78325049 nonsynonymous SNV 1.000 3 29 hm5C_associated_SNPs_45725 0 0 0 0 2 unknown 1 0.500231643898608 1 0.999536712202784 hm5C_site_44483 DeepMRMD:1;iRNA_m5C:0.999536712202784 44484 chrX 69639626 69639626 1 + A T UCEC 69639607 + 69639587 69639627 41 CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCAAT CAGGATTGAGCTTCTTTAATCCCGTCTGTGCCACCCCCATT < 41bp 1 0.408890844634454 1 0.101356476545334 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639607 chrX:69639626 nonsynonymous SNV 0.989 1 40 hm5C_associated_SNPs_45726 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_44484 DeepMRMD:1;iRNA_m5C:0.999536712157815 44485 chr13 111147746 111147746 1 + C A UCEC 111147745 + 111147725 111147765 41 CTCCTGGGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTT CTCCTGGGGAAAGAGGTGACCAAGGAGAGGCCAACACCCTT < 41bp 1 0.431314032108117 1 0.764168441295624 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111147745 chr13:111147746 nonsynonymous SNV 0.032 4 22 hm5C_associated_SNPs_45727 0 0 1 0 2 Cytosol 1 0.500231644109099 0.471663117408752 0.999536711781802 hm5C_site_44485 DeepMRMD:0.471663117408752;iRNA_m5C:0.999536711781802 44486 chr6 145157505 145157505 1 + C T UCEC 145157491 + 145157471 145157511 41 CAGCACCTCCGAAGGGGGCTCCCTGTCGGTTCACCGCCAGA CAGCACCTCCGAAGGGGGCTCCCTGTCGGTTCACTGCCAGA < 41bp 1 0.0567389051584474 1 0.291519343852997 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control UTRN ENSG00000152818 CDS Human protein_coding chr6:145157491 chr6:145157505 nonsynonymous SNV 0.009 3 35 hm5C_associated_SNPs_45728 0 0 0 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_44486 DeepMRMD:1;iRNA_m5C:0.999536712157814 44487 chr3 49713563 49713563 1 + G T UCEC 49713571 + 49713551 49713591 41 AAGCGCCCCAAGGCCGAGTCCTTCTTTCAGACCAAAGCCTT AAGCGCCCCAAGTCCGAGTCCTTCTTTCAGACCAAAGCCTT < 41bp 1 0.166510853730267 1 0.0686521530151367 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49713571 chr3:49713563 nonsynonymous SNV 0.967 0 13 hm5C_associated_SNPs_45729 0 0 1 0 2 Cytosol 1 0.500231643920568 1 0.999536712158865 hm5C_site_44487 DeepMRMD:1;iRNA_m5C:0.999536712158865 44488 chr16 66998549 66998549 1 + G A UCEC 66998564 + 66998544 66998584 41 GCAGGGCTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT GCAGGACTGTTCCACAGAGCCATCACACAGAGTGGGGTCAT < 41bp 1 0.447910349626997 1 0.123782753944397 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CES3 ENSG00000172828 CDS Human protein_coding chr16:66998564 chr16:66998549 synonymous SNV . 0 6 hm5C_associated_SNPs_45730 0 0 1 0 2 nucleolus 1 0.500234725738843 1 0.999530548522314 hm5C_site_44488 DeepMRMD:1;iRNA_m5C:0.999530548522314 44489 chr19 42392282 42392282 1 + G A UCEC 42392281 + 42392261 42392301 41 AGGCCTCCCCAGGCCCCTCCCGGCCTGGCCTGGTTCCCGTC AGGCCTCCCCAGGCCCCTCCCAGCCTGGCCTGGTTCCCGTC < 41bp 1 0.263116729476718 1 0.741267561912537 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42392281 chr19:42392282 nonsynonymous SNV 0.247 2 22 hm5C_associated_SNPs_45731 0 0 1 0 2 Cytosol 1 0.500231643921092 0.517464876174926 0.999536712157815 hm5C_site_44489 DeepMRMD:0.517464876174926;iRNA_m5C:0.999536712157815 44490 chr2 15732063 15732063 1 + G A UCEC 15732066 + 15732046 15732086 41 GACGGGGTGAAGATGGCGGCCTTCTCCGGTGCGTTTGTGGA GACGGGGTGAAGATGGCAGCCTTCTCCGGTGCGTTTGTGGA < 41bp 1 0.391968881158225 1 0.154820501804352 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX1 ENSG00000079785 CDS Human protein_coding chr2:15732066 chr2:15732063 synonymous SNV . 0 18 hm5C_associated_SNPs_45732 0 0 1 0 1 Cytosol 1 0.500231643921618 1 0.999536712156764 hm5C_site_44490 DeepMRMD:1;iRNA_m5C:0.999536712156764 44491 chr19 58290954 58290954 1 + T C UCEC 58290970 + 58290950 58290990 41 TTATTATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT TTATCATACATCTGAGAGTTCACACTGGAGAAAGGCCTTAT < 41bp 1 0.224049017288204 1 0.0635986924171448 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290970 chr19:58290954 synonymous SNV . 0 5 hm5C_associated_SNPs_45733 0 0 1 2 0 chromatin 1 0.500231643648447 1 0.999536712703105 hm5C_site_44491 DeepMRMD:1;iRNA_m5C:0.999536712703105 44492 chrX 64956742 64956742 1 + G A UCEC 64956736 + 64956716 64956756 41 TTGAACGGGAGAAGGAGGAGCTGATGGAGAGGCTGAAGCAG TTGAACGGGAGAAGGAGGAGCTGATGAAGAGGCTGAAGCAG < 41bp 1 0.368301991845203 1 0.403478443622589 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MSN ENSG00000147065 CDS Human protein_coding chrX:64956736 chrX:64956742 nonsynonymous SNV 0.996 1 27 hm5C_associated_SNPs_45734 0 0 1 0 2 Ribosome 1 0.500231643931935 1 0.999536712136131 hm5C_site_44492 DeepMRMD:1;iRNA_m5C:0.999536712136131 44493 chr1 206574977 206574977 1 + T G UCEC 206574965 + 206574945 206574985 41 TACAACAACGTCTTCTGCCCCCCTATGAAGTTTGAGTTTCA TACAACAACGTCTTCTGCCCCCCTATGAAGTTGGAGTTTCA < 41bp 1 0.181451155862946 1 0.137318283319473 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SRGAP2 ENSG00000163486 CDS Human other chr1:206574965 chr1:206574977 nonsynonymous SNV 0.999 3 33 hm5C_associated_SNPs_45735 0 0 0 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_44493 DeepMRMD:1;iRNA_m5C:0.999536712157815 44494 chr1 231401782 231401782 1 + G T UCEC 231401783 + 231401763 231401803 41 TTCTGAATATTGTGATGGAGCCATTTTTTAAAAGAGAAGTT TTCTGAATATTGTGATGGATCCATTTTTTAAAAGAGAAGTT < 41bp 1 0.103824968514553 1 0.050985187292099 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control GNPAT ENSG00000116906 CDS Human protein_coding chr1:231401783 chr1:231401782 nonsynonymous SNV 0.999 2 20 hm5C_associated_SNPs_45736 0 0 1 0 1 Cytosol 1 0.500231643968276 1 0.999536712063447 hm5C_site_44494 DeepMRMD:1;iRNA_m5C:0.999536712063447 44495 chr17 37816514 37816514 1 + G A UCEC 37816499 + 37816479 37816519 41 GTGTACACCATTGAAGTTCCCTTTCACGGCAAGACGTTTAT GTGTACACCATTGAAGTTCCCTTTCACGGCAAGACATTTAT < 41bp 1 0.0467741709037189 1 0.0245318710803986 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control STARD3 ENSG00000131748 CDS Human protein_coding chr17:37816499 chr17:37816514 nonsynonymous SNV . 0 36 hm5C_associated_SNPs_45737 0 0 1 1 2 Ribosome 1 0.500231643921034 1 0.999536712157931 hm5C_site_44495 DeepMRMD:1;iRNA_m5C:0.999536712157931 44496 chr1 37947357 37947357 1 + C T UCEC 37947350 + 37947330 37947370 41 GGGATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGG GGGATCGTGGTTTCCAACGACACATACTGTGACCTCCAAGG < 41bp 1 0.252143761187648 1 0.417165160179138 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947350 chr1:37947357 nonsynonymous SNV 0.833 4 28 hm5C_associated_SNPs_45738 0 0 0 0 1 Nucleus 1 0.500231643891376 1 0.999536712217249 hm5C_site_44496 DeepMRMD:1;iRNA_m5C:0.999536712217249 44497 chr1 37947357 37947357 1 + C T UCEC 37947352 + 37947332 37947372 41 GATCGTGGTTTCCAACGACACATACCGTGACCTCCAAGGCG GATCGTGGTTTCCAACGACACATACTGTGACCTCCAAGGCG < 41bp 1 0.181721174545594 1 0.113150864839554 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37947352 chr1:37947357 nonsynonymous SNV 0.833 4 26 hm5C_associated_SNPs_45739 0 0 0 0 1 Nucleus 1 0.500231643921069 1 0.999536712157861 hm5C_site_44497 DeepMRMD:1;iRNA_m5C:0.999536712157861 44498 chr5 10258301 10258301 1 + C T UCEC 10258282 + 10258262 10258302 41 GAATGCCGTCCTCACTGTAGCAGATATGGAGCGGAGAGACG GAATGCCGTCCTCACTGTAGCAGATATGGAGCGGAGAGATG < 41bp 1 0.415102638525467 1 0.241710662841797 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CCT5 ENSG00000150753 CDS Human protein_coding chr5:10258282 chr5:10258301 synonymous SNV . 0 40 hm5C_associated_SNPs_45741 0 0 1 0 0 Cytosol 1 0.500231798261561 1 0.999536403476877 hm5C_site_44498 DeepMRMD:1;iRNA_m5C:0.999536403476877 44499 chr16 21190820 21190820 1 + T C UCEC 21190826 + 21190806 21190846 41 CAGCAAAACACCAGTTGTGACTTTCTGCCAGCCATGAAGTC CAGCAAAACACCAGCTGTGACTTTCTGCCAGCCATGAAGTC < 41bp 1 0.0616158032687862 1 0.0434902310371399 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TMEM159 ENSG00000011638 CDS Human protein_coding chr16:21190826 chr16:21190820 synonymous SNV . 0 15 hm5C_associated_SNPs_45742 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44499 DeepMRMD:1;iRNA_m5C:0.999536712157815 44500 chr8 9620700 9620700 1 + G A UCEC 9620699 + 9620679 9620719 41 TCACTGTGTTAATCAGGGAACGATTTTGCTGGATCTTGCTC TCACTGTGTTAATCAGGGAACAATTTTGCTGGATCTTGCTC < 41bp 1 0.0729942470149578 1 0.0845592617988586 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TNKS ENSG00000173273 CDS Human protein_coding chr8:9620699 chr8:9620700 synonymous SNV . 0 22 hm5C_associated_SNPs_45743 0 0 1 0 2 Nucleus 1 0.500231643922593 1 0.999536712154814 hm5C_site_44500 DeepMRMD:1;iRNA_m5C:0.999536712154814 44501 chr3 58112452 58112452 1 + C T UCEC 58112439 + 58112419 58112459 41 TGCTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTA TGCTGAGTACATTCCTTTCGCACCGGGGGATTATGATGTTA < 41bp 1 0.451523379936074 1 0.157622963190079 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112439 chr3:58112452 synonymous SNV . 0 34 hm5C_associated_SNPs_45744 1 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157814 hm5C_site_44501 DeepMRMD:1;iRNA_m5C:0.999536712157814 FLNB-Related Spectrum Disorders FLNB-Related Spectrum Disorders 44502 chr3 58112452 58112452 1 + C T UCEC 58112441 + 58112421 58112461 41 CTGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAAT CTGAGTACATTCCTTTCGCACCGGGGGATTATGATGTTAAT < 41bp 1 0.212244887369182 1 0.323051989078522 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112441 chr3:58112452 synonymous SNV . 0 32 hm5C_associated_SNPs_45745 1 0 1 0 1 Cytosol 1 0.500231695104679 1 0.999536609790642 hm5C_site_44502 DeepMRMD:1;iRNA_m5C:0.999536609790642 FLNB-Related Spectrum Disorders FLNB-Related Spectrum Disorders 44503 chr3 58112452 58112452 1 + C T UCEC 58112442 + 58112422 58112462 41 TGAGTACATTCCTTTCGCACCGGGGGATTACGATGTTAATA TGAGTACATTCCTTTCGCACCGGGGGATTATGATGTTAATA < 41bp 1 0.392310027345162 1 0.903830349445343 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FLNB ENSG00000136068 CDS Human protein_coding chr3:58112442 chr3:58112452 synonymous SNV . 0 31 hm5C_associated_SNPs_45746 1 0 1 0 1 Cytosol 1 0.500231643921091 0.192339301109314 0.999536712157818 hm5C_site_44503 DeepMRMD:0.192339301109314;iRNA_m5C:0.999536712157818 FLNB-Related Spectrum Disorders FLNB-Related Spectrum Disorders 44504 chr21 42769566 42769566 1 + C T UCEC 42769560 + 42769540 42769580 41 AGTTCTCCTGGAGGAGGGGTCAGCCACGGTTCCCCGACTGG AGTTCTCCTGGAGGAGGGGTCAGCCATGGTTCCCCGACTGG < 41bp 1 0.351157013331653 1 0.241688787937164 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MX2 ENSG00000183486 CDS Human protein_coding chr21:42769560 chr21:42769566 nonsynonymous SNV 0.885 4 27 hm5C_associated_SNPs_45747 0 0 0 0 1 exosome 1 0.5002316447743 1 0.999536710451399 hm5C_site_44504 DeepMRMD:1;iRNA_m5C:0.999536710451399 44505 chr15 100215624 100215624 1 + G A UCEC 100215637 + 100215617 100215657 41 CACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC CACTACAAACCTCACAGTGCCAAATGGAGCTGGAAGCAGTC < 41bp 1 0.271071961224188 1 0.457383155822754 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MEF2A ENSG00000068305 CDS Human protein_coding chr15:100215637 chr15:100215624 nonsynonymous SNV 0.981 4 8 hm5C_associated_SNPs_45748 0 0 1 0 2 Endoplasmic reticulum 1 0.500231078702032 1 0.999537842595937 hm5C_site_44505 DeepMRMD:1;iRNA_m5C:0.999537842595937 44506 chr5 145858109 145858109 1 + G A UCEC 145858103 + 145858083 145858123 41 GGTCTTCTTTTATAATCCCACCACTCGTCTTTCTATGTGGG GGTCTTCTTTTATAATCCCACCACTCATCTTTCTATGTGGG < 41bp 1 0.0650412797978777 1 0.0461867153644562 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145858103 chr5:145858109 nonsynonymous SNV 0.997 4 27 hm5C_associated_SNPs_45750 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_44506 DeepMRMD:1;iRNA_m5C:0.999536712157816 44507 chr5 14359525 14359525 1 + C T UCEC 14359530 + 14359510 14359550 41 TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG TCAACCACATTGAGATGGTGCTGCAGCAGCTGGACGAGGCG < 41bp 1 0.348767494814053 1 0.49131640791893 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359530 chr5:14359525 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_45751 0 0 1 0 1 Nucleus 1 0.500241254918569 1 0.999517490162861 hm5C_site_44507 DeepMRMD:1;iRNA_m5C:0.999517490162861 44508 chr19 36227604 36227604 1 + C T UCEC 36227620 + 36227600 36227640 41 CGAGCTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG CGAGTTCTGAGGAAGAGCCTCCATCCCCAGATGATAAAGAG < 41bp 1 0.00751147651703197 1 0.109802752733231 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227620 chr19:36227604 synonymous SNV . 0 5 hm5C_associated_SNPs_45753 0 0 1 0 1 chromatin 1 0.500231643921337 1 0.999536712157327 hm5C_site_44508 DeepMRMD:1;iRNA_m5C:0.999536712157327 44509 chr1 22336327 22336327 1 + G A UCEC 22336307 + 22336287 22336327 41 CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCG CAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCA < 41bp 1 0.420523190564396 1 0.282875418663025 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336307 chr1:22336327 nonsynonymous SNV 0.389 4 41 hm5C_associated_SNPs_45754 0 0 0 0 1 Endoplasmic reticulum 1 0.500231640646428 1 0.999536718707144 hm5C_site_44509 DeepMRMD:1;iRNA_m5C:0.999536718707144 44510 chr1 22336327 22336327 1 + G A UCEC 22336314 + 22336294 22336334 41 ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCAT ATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCACCTTCAT < 41bp 1 0.327980052981468 1 0.0156124234199524 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336314 chr1:22336327 nonsynonymous SNV 0.389 4 34 hm5C_associated_SNPs_45755 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643928468 1 0.999536712143064 hm5C_site_44510 DeepMRMD:1;iRNA_m5C:0.999536712143064 44511 chr1 22336327 22336327 1 + G A UCEC 22336326 + 22336306 22336346 41 ACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGA ACGGTGTTCACTCGAGTCTCCACCTTCATCGACTGGATTGA < 41bp 1 0.367522080556274 1 0.0266448855400085 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336326 chr1:22336327 nonsynonymous SNV 0.389 4 22 hm5C_associated_SNPs_45758 0 0 0 0 1 Endoplasmic reticulum 1 0.500231657859284 1 0.999536684281432 hm5C_site_44511 DeepMRMD:1;iRNA_m5C:0.999536684281432 44512 chr1 22336327 22336327 1 + G A UCEC 22336329 + 22336309 22336349 41 GTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGA GTGTTCACTCGAGTCTCCACCTTCATCGACTGGATTGAGGA < 41bp 1 0.449688320266515 1 0.661939203739166 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336329 chr1:22336327 nonsynonymous SNV 0.389 4 19 hm5C_associated_SNPs_45759 0 0 0 0 1 Endoplasmic reticulum 1 0.50023165007277 0.676121592521668 0.99953669985446 hm5C_site_44512 DeepMRMD:0.676121592521668;iRNA_m5C:0.99953669985446 44513 chr1 22336327 22336327 1 + G A UCEC 22336332 + 22336312 22336352 41 TTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGT TTCACTCGAGTCTCCACCTTCATCGACTGGATTGAGGAGGT < 41bp 1 0.34579205838526 1 0.359843850135803 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336332 chr1:22336327 nonsynonymous SNV 0.389 4 16 hm5C_associated_SNPs_45760 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921491 1 0.999536712157019 hm5C_site_44513 DeepMRMD:1;iRNA_m5C:0.999536712157019 44514 chr1 22336327 22336327 1 + G A UCEC 22336335 + 22336315 22336355 41 ACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGGTGAG ACTCGAGTCTCCACCTTCATCGACTGGATTGAGGAGGTGAG < 41bp 1 0.57440707263377 1 0.242462307214737 experiment 0.85118585473246 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22336335 chr1:22336327 nonsynonymous SNV 0.389 4 13 hm5C_associated_SNPs_45761 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921062 1 0.999536712157877 hm5C_site_44514 DeepMRMD:1;iRNA_m5C:0.999536712157877 44515 chrX 47083802 47083802 1 + T C UCEC 47083814 + 47083794 47083834 41 CGAGGACTTGAAGATGGGGTCTGATGGGGAGAGTGACCAGG CGAGGACTCGAAGATGGGGTCTGATGGGGAGAGTGACCAGG < 41bp 1 0.432091651240003 1 0.107244879007339 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CDK16 ENSG00000102225 CDS Human protein_coding chrX:47083814 chrX:47083802 nonsynonymous SNV 1.000 2 9 hm5C_associated_SNPs_45763 0 0 1 0 1 Ribosome 1 0.500231639554193 1 0.999536720891615 hm5C_site_44515 DeepMRMD:1;iRNA_m5C:0.999536720891615 44516 chr16 19548877 19548877 1 + A G UCEC 19548865 + 19548845 19548885 41 AAAAAGATACCCTAAGGGATCTGGCTTCGTTAACAAGAATA AAAAAGATACCCTAAGGGATCTGGCTTCGTTAGCAAGAATA < 41bp 1 0.424006057551856 1 0.243605494499207 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCP110 ENSG00000103540 CDS Human protein_coding chr16:19548865 chr16:19548877 nonsynonymous SNV 0.993 0 33 hm5C_associated_SNPs_45764 0 0 1 0 1 Cytosol 1 0.500231643921762 1 0.999536712156476 hm5C_site_44516 DeepMRMD:1;iRNA_m5C:0.999536712156476 44517 chr17 79010741 79010741 1 + C T UCEC 79010724 + 79010704 79010744 41 TTCTCCTTCTGCGCTGAAACCAGAAAGCAGGAACTTTCGTG TTCTCCTTCTGCGCTGAAACCAGAAAGCAGGAACTTTTGTG < 41bp 1 0.469240955259143 1 0.444808840751648 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79010724 chr17:79010741 nonsynonymous SNV 0.008 0 38 hm5C_associated_SNPs_45766 0 0 0 0 2 Cytosol 1 0.500231643177155 1 0.999536713645691 hm5C_site_44517 DeepMRMD:1;iRNA_m5C:0.999536713645691 44518 chr19 41807543 41807543 1 + C T UCEC 41807534 + 41807514 41807554 41 TTTGTCCCACTGACGAGGACCTAAAAGACCGAACAATAAAG TTTGTCCCACTGACGAGGACCTAAAAGACTGAACAATAAAG < 41bp 1 0.288845360765067 1 0.191483050584793 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41807534 chr19:41807543 stopgain 0.993 1 30 hm5C_associated_SNPs_45767 0 0 1 0 1 Cytosol 1 0.500231645386644 1 0.999536709226713 hm5C_site_44518 DeepMRMD:1;iRNA_m5C:0.999536709226713 44519 chr1 220313612 220313612 1 + T C UCEC 220313599 + 220313579 220313619 41 ACGTTTTATACCAGAGAGCTCTCTAACTTTTATTTCAGTAT ACGTTTTATACCAGAGAGCTCTCTAACTTTTATCTCAGTAT < 41bp 1 0.347119124392304 1 0.629381060600281 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control IARS2 ENSG00000067704 CDS Human protein_coding chr1:220313599 chr1:220313612 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_45768 0 0 1 0 2 Ribosome 1 0.500231643921092 0.741237878799438 0.999536712157815 hm5C_site_44519 DeepMRMD:0.741237878799438;iRNA_m5C:0.999536712157815 44520 chr19 39592170 39592170 1 + G A UCEC 39592152 + 39592132 39592172 41 CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGGAT CTACACCAACCCGCGAGGGCCTGTCCACATCATCACAGAAT < 41bp 1 0.0706859450962037 1 0.151329815387726 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592152 chr19:39592170 nonsynonymous SNV 0.270 4 39 hm5C_associated_SNPs_45770 0 0 0 0 2 exosome 1 0.500231633186891 1 0.999536733626218 hm5C_site_44520 DeepMRMD:1;iRNA_m5C:0.999536733626218 44521 chr19 10561589 10561589 1 + G A UCEC 10561575 + 10561555 10561595 41 TGTCTGGAGCAGCTGGAGACCATGCAGACCTATCGCTCTGT TGTCTGGAGCAGCTGGAGACCATGCAGACCTATCACTCTGT < 41bp 1 0.196436937119726 1 0.433032929897308 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561575 chr19:10561589 nonsynonymous SNV 0.984 1 35 hm5C_associated_SNPs_45771 0 0 1 0 2 chromatin 1 0.500231622661802 1 0.999536754676395 hm5C_site_44521 DeepMRMD:1;iRNA_m5C:0.999536754676395 44522 chr15 22933577 22933577 1 + C T UCEC 22933564 + 22933544 22933584 41 TCTTTTTGTTTTCAAAGGGCCGCTCAGTTTTTACGTAAAAT TCTTTTTGTTTTCAAAGGGCCGCTCAGTTTTTATGTAAAAT < 41bp 1 0.0229608917783089 1 0.0714161694049835 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CYFIP1 ENSG00000068793 CDS Human other chr15:22933564 chr15:22933577 nonsynonymous SNV . 0 34 hm5C_associated_SNPs_45772 0 0 1 0 2 Cytosol 1 0.500231643923765 1 0.999536712152471 hm5C_site_44522 DeepMRMD:1;iRNA_m5C:0.999536712152471 44523 chr11 17393601 17393601 1 + A G UCEC 17393604 + 17393584 17393624 41 CTCTCAAGTGCATTCTGAAACACTGGAACTCCTTTGACACT CTCTCAAGTGCATTCTGGAACACTGGAACTCCTTTGACACT < 41bp 1 0.221685790965959 1 0.0984623730182648 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NCR3LG1 ENSG00000188211 CDS Human protein_coding chr11:17393604 chr11:17393601 nonsynonymous SNV 0.732 0 18 hm5C_associated_SNPs_45774 0 0 1 0 1 Nucleus 1 0.500231497450237 1 0.999537005099525 hm5C_site_44523 DeepMRMD:1;iRNA_m5C:0.999537005099525 44524 chr2 37475367 37475367 1 + G A UCEC 37475350 + 37475330 37475370 41 GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGA GATATGATATGTTAATGAATCCAAAGAAGATGGGAGAAAGA < 41bp 1 0.398916921974601 1 0.669553875923157 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475350 chr2:37475367 synonymous SNV . 0 38 hm5C_associated_SNPs_45775 0 0 1 1 1 chromatin 1 0.500231643901296 0.660892248153686 0.999536712197407 hm5C_site_44524 DeepMRMD:0.660892248153686;iRNA_m5C:0.999536712197407 44525 chr2 37475367 37475367 1 + G A UCEC 37475351 + 37475331 37475371 41 ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAGAGAT ATATGATATGTTAATGAATCCAAAGAAGATGGGAGAAAGAT < 41bp 1 0.38217753094069 1 0.334486961364746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475351 chr2:37475367 synonymous SNV . 0 37 hm5C_associated_SNPs_45776 0 0 1 1 1 chromatin 1 0.500231643820546 1 0.999536712358909 hm5C_site_44525 DeepMRMD:1;iRNA_m5C:0.999536712358909 44526 chr10 103908238 103908238 1 + C T UCEC 103908226 + 103908206 103908246 41 CATCCTCATCATCCAGTTCTCGAAGCCGCTCACGATCCCCA CATCCTCATCATCCAGTTCTCGAAGCCGCTCATGATCCCCA < 41bp 1 0.47888017029934 1 0.793367624282837 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908226 chr10:103908238 stopgain 0.008 1 33 hm5C_associated_SNPs_45777 0 0 1 0 1 Cytosol 1 0.500231643920917 0.413264751434326 0.999536712158166 hm5C_site_44526 DeepMRMD:0.413264751434326;iRNA_m5C:0.999536712158166 44527 chr19 52714686 52714686 1 + C T UCEC 52714692 + 52714672 52714712 41 CGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCG CGCACCTCGGCCTGTGGCCTCTTCTCCGTCTGCTACCCCCG < 41bp 1 0.433826247827528 1 0.10617795586586 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52714692 chr19:52714686 synonymous SNV . 0 15 hm5C_associated_SNPs_45778 0 0 1 0 1 Ribosome 1 0.500231643911249 1 0.999536712177502 hm5C_site_44527 DeepMRMD:1;iRNA_m5C:0.999536712177502 44528 chr9 20923686 20923686 1 + G A UCEC 20923667 + 20923647 20923687 41 CCTTTTGAACAGGGAGAGTCCGGTAGTGAAAGGCAATGCGC CCTTTTGAACAGGGAGAGTCCGGTAGTGAAAGGCAATGCAC < 41bp 1 0.574613513587418 1 0.275038450956345 experiment 0.850772972825164 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOCAD ENSG00000188352 CDS Human protein_coding chr9:20923667 chr9:20923686 synonymous SNV . 0 40 hm5C_associated_SNPs_45780 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44528 DeepMRMD:1;iRNA_m5C:0.999536712157815 44529 chr1 109643050 109643050 1 + C A UCEC 109643033 + 109643013 109643053 41 TGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCT TGACCCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGATCT < 41bp 1 0.131532296668742 1 0.145508378744125 experiment 1 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target|23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643033 chr1:109643050 . . 0 38 hm5C_associated_SNPs_45781 0 0 1 2 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_44529 DeepMRMD:1;iRNA_m5C:0.999536712157815 44530 chr1 109643050 109643050 1 + C A UCEC 109643037 + 109643017 109643057 41 CCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGCTCTCCTC CCCAGCCCCGCCGGGCCGACCCGAAATGAAAAGATCTCCTC < 41bp 1 0.668829065435276 1 0.349602460861206 experiment 0.662341869129447 Functional Loss 23604283;GSE38957;Aza-IP;HeLa;DNMT2 target SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643037 chr1:109643050 . . 0 34 hm5C_associated_SNPs_45782 0 0 1 2 0 unknown 1 0.500231644015857 1 0.999536711968287 hm5C_site_44530 DeepMRMD:1;iRNA_m5C:0.999536711968287 44531 chr1 109643050 109643050 1 + C A UCEC 109643068 + 109643048 109643088 41 AGCTCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG AGATCTCCTCCTGCGAAGCCCCCTCGGGGCGCTGTGCAGCG < 41bp 1 0.153001594729939 1 0.220854580402374 experiment 1 Functional Loss 23604283;GSE38958;Aza-IP;HeLa;Control SCARNA2 ENSG00000270066 ncRNA_exonic Human lincRNA chr1:109643068 chr1:109643050 . . 0 3 hm5C_associated_SNPs_45783 0 0 1 2 0 unknown 1 0.500231643920884 1 0.999536712158232 hm5C_site_44531 DeepMRMD:1;iRNA_m5C:0.999536712158232 44532 chr19 541465 541465 1 + C T UCEC 541454 + 541434 541474 41 CGCCCGACGAGGGCTCAGACCTCTTCTACGACGACTACTAC CGCCCGACGAGGGCTCAGACCTCTTCTACGATGACTACTAC < 41bp 1 0.223278347862475 1 0.46093761920929 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control CDC34 ENSG00000099804 CDS Human protein_coding chr19:541454 chr19:541465 synonymous SNV . 0 32 hm5C_associated_SNPs_45784 0 0 1 0 0 Ribosome 1 0.500231644623595 1 0.999536710752809 hm5C_site_44532 DeepMRMD:1;iRNA_m5C:0.999536710752809 44533 chr15 68480059 68480059 1 + C T UCEC 68480074 + 68480054 68480094 41 AGCAGCCTGGTTTCTTCCAACAGCCTAAGGGAAAGCCATAG AGCAGTCTGGTTTCTTCCAACAGCCTAAGGGAAAGCCATAG < 41bp 1 0.501731155871543 1 0.515818536281586 experiment 0.996537688256914 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68480074 chr15:68480059 synonymous SNV . 0 6 hm5C_associated_SNPs_45785 0 0 1 0 0 Cytosol 1 0.500231643921092 0.968362927436828 0.999536712157815 hm5C_site_44533 DeepMRMD:0.968362927436828;iRNA_m5C:0.999536712157815 44534 chr3 184040728 184040728 1 + G A UCEC 184040721 + 184040701 184040741 41 CCAGAGGGATTGCCACATATCAGTGACGTGGTGCTGGACAA CCAGAGGGATTGCCACATATCAGTGACATGGTGCTGGACAA < 41bp 1 0.643404592823791 1 0.400867104530334 experiment 0.713190814352418 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184040721 chr3:184040728 nonsynonymous SNV 0.997 4 28 hm5C_associated_SNPs_45786 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157816 hm5C_site_44534 DeepMRMD:1;iRNA_m5C:0.999536712157816 44535 chr14 105916470 105916470 1 + G A UCEC 105916480 + 105916460 105916500 41 CTGCGGCATCGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTC CTGCGGCATCAGGAGCTGTTCCTCTCCCGGCAGCTGGAGTC < 41bp 1 0.151628574761219 1 0.0918189883232117 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105916480 chr14:105916470 nonsynonymous SNV 0.989 4 11 hm5C_associated_SNPs_45787 0 0 1 0 2 Cytosol 1 0.500231643912806 1 0.999536712174387 hm5C_site_44535 DeepMRMD:1;iRNA_m5C:0.999536712174387 44536 chr1 148561080 148561080 1 + G A UCEC 148561060 + 148561040 148561080 41 AGAAACTTCCCCATTCGGTGCACCAAGAGCAACCTCACACG AGAAACTTCCCCATTCGGTGCACCAAGAGCAACCTCACACA < 41bp 1 0.536713993395505 1 0.0491900146007538 experiment 0.92657201320899 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NBPF25P ENSG00000243452 UTR5 Human other chr1:148561060 chr1:148561080 . . 0 41 hm5C_associated_SNPs_45788 0 0 1 0 1 unknown 1 0.500231643921034 1 0.999536712157932 hm5C_site_44536 DeepMRMD:1;iRNA_m5C:0.999536712157932 44537 chr1 45270422 45270422 1 + G A UCEC 45270421 + 45270401 45270441 41 CTGGGTATCCTGCGGTACTTCGCCTCCTACATGGAGCAGCA CTGGGTATCCTGCGGTACTTCACCTCCTACATGGAGCAGCA < 41bp 1 0.630598107266232 1 0.281911253929138 experiment 0.738803785467535 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLK3 ENSG00000173846 CDS Human protein_coding chr1:45270421 chr1:45270422 nonsynonymous SNV 0.815 0 22 hm5C_associated_SNPs_45789 0 0 0 0 1 Cytosol 1 0.500231643481675 1 0.99953671303665 hm5C_site_44537 DeepMRMD:1;iRNA_m5C:0.99953671303665 44538 chr14 89336497 89336497 1 + A G UCEC 89336501 + 89336481 89336521 41 GCATGCATTGGAAGCAACCACTTCTATTCTGATCAGCCAGA GCATGCATTGGAAGCAGCCACTTCTATTCTGATCAGCCAGA < 41bp 1 0.229501083308944 1 0.0619073212146759 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC8 ENSG00000165533 CDS Human protein_coding chr14:89336501 chr14:89336497 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_45790 0 0 1 0 2 Nucleus 1 0.500231482435318 1 0.999537035129364 hm5C_site_44538 DeepMRMD:1;iRNA_m5C:0.999537035129364 44539 chrX 2777935 2777935 1 + G A UCEC 2777923 + 2777903 2777943 41 GTCGTCCACTTTTTGGGGTCCATGAAACCTTGGAACTACAA GTCGTCCACTTTTTGGGGTCCATGAAACCTTGAAACTACAA < 41bp 1 0.281545876989297 1 0.278948485851288 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GYG2 ENSG00000056998 CDS Human protein_coding chrX:2777923 chrX:2777935 stopgain 0.791 1 33 hm5C_associated_SNPs_45791 0 0 0 0 1 Cytosol 1 0.500231644106919 1 0.999536711786163 hm5C_site_44539 DeepMRMD:1;iRNA_m5C:0.999536711786163 44540 chr11 64085799 64085799 1 + T C UCEC 64085786 + 64085766 64085806 41 GCAGCGGCAGCAAGACGGTACAGTGAAGGAGAGTGGGCGTC GCAGCGGCAGCAAGACGGTACAGTGAAGGAGAGCGGGCGTC < 41bp 1 0.640850189377742 1 0.262965768575668 experiment 0.718299621244517 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64085786 chr11:64085799 nonsynonymous SNV 0.085 0 34 hm5C_associated_SNPs_45792 0 0 1 0 1 Cytosol 1 0.500231643951711 1 0.999536712096577 hm5C_site_44540 DeepMRMD:1;iRNA_m5C:0.999536712096577 44541 chr3 40353050 40353050 1 + G T UCEC 40353054 + 40353034 40353074 41 GAAAAAACATCTGCCAGTTTCTCTTGGAGGTGAGTGATTGG GAAAAAACATCTGCCATTTTCTCTTGGAGGTGAGTGATTGG < 41bp 1 0.45522632917037 1 0.211148858070374 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EIF1B ENSG00000114784 CDS Human protein_coding chr3:40353054 chr3:40353050 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_45793 0 0 1 0 2 Cytosol 1 0.50023164333916 1 0.99953671332168 hm5C_site_44541 DeepMRMD:1;iRNA_m5C:0.99953671332168 44542 chr3 126725010 126725010 1 + C T UCEC 126725001 + 126724981 126725021 41 TCTGTGGACTTCGTCTTCTACAACTGCAGCGTCCACCAGTC TCTGTGGACTTCGTCTTCTACAACTGCAGTGTCCACCAGTC < 41bp 1 0.233834566720427 1 0.26050528883934 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126725001 chr3:126725010 synonymous SNV . 0 30 hm5C_associated_SNPs_45794 0 0 1 0 2 Ribosome 1 0.500231644127918 1 0.999536711744165 hm5C_site_44542 DeepMRMD:1;iRNA_m5C:0.999536711744165 44543 chr6 31602097 31602097 1 + G T UCEC 31602080 + 31602060 31602100 41 TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACAGGCA TGAGGGCCCAGGCCCTCAGGCAGAGTCCAGAGATACATGCA < 41bp 1 0.41193530380043 1 0.820781111717224 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31602080 chr6:31602097 nonsynonymous SNV 0.997 3 38 hm5C_associated_SNPs_45795 0 0 1 0 2 Ribosome 1 0.500231643921092 0.358437776565552 0.999536712157815 hm5C_site_44543 DeepMRMD:0.358437776565552;iRNA_m5C:0.999536712157815 44544 chr16 29853334 29853334 1 + G A UCEC 29853323 + 29853303 29853343 41 GCTGGGCGGCCCAAGCGTCCCCATGCCCGCCGTGCGCTCTG GCTGGGCGGCCCAAGCGTCCCCATGCCCGCCATGCGCTCTG < 41bp 1 0.324482318551051 1 0.0862736105918884 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MVP ENSG00000013364 CDS Human protein_coding chr16:29853323 chr16:29853334 nonsynonymous SNV 0.992 2 32 hm5C_associated_SNPs_45796 0 0 0 1 0 Nucleus 1 0.500244784819456 1 0.999510430361087 hm5C_site_44544 DeepMRMD:1;iRNA_m5C:0.999510430361087 44545 chr19 15224375 15224375 1 + C T UCEC 15224376 + 15224356 15224396 41 CCTGTCTCCCTTCAGATCCCCGCCTGCCCCGACAATCTCCA CCTGTCTCCCTTCAGATCCTCGCCTGCCCCGACAATCTCCA < 41bp 1 0.265097356272198 1 0.0585660338401794 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15224376 chr19:15224375 synonymous SNV . 0 20 hm5C_associated_SNPs_45797 0 0 0 0 1 exosome 1 0.500231643977504 1 0.999536712044992 hm5C_site_44545 DeepMRMD:1;iRNA_m5C:0.999536712044992 44546 chr1 22331944 22331944 1 + C T UCEC 22331945 + 22331925 22331965 41 CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGG CTCCTGGGCCACCAGGTTTTCCTGCAGTATGAGAAAAGTGG < 41bp 1 0.0815440565960126 1 0.23332467675209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331945 chr1:22331944 nonsynonymous SNV 0.916 4 20 hm5C_associated_SNPs_45798 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921115 1 0.999536712157771 hm5C_site_44546 DeepMRMD:1;iRNA_m5C:0.999536712157771 44547 chr1 22331944 22331944 1 + C T UCEC 22331949 + 22331929 22331969 41 TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGAAGC TGGGCCACCAGGTTTTCCTGCAGTATGAGAAAAGTGGAAGC < 41bp 1 0.560684621748244 1 0.279086470603943 experiment 0.878630756503513 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331949 chr1:22331944 nonsynonymous SNV 0.916 4 16 hm5C_associated_SNPs_45799 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44547 DeepMRMD:1;iRNA_m5C:0.999536712157815 44548 chr19 54377048 54377048 1 + G A UCEC 54377053 + 54377033 54377073 41 ATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTC ATCGTGGAGCTGTGCAGGCTCCAGGCCCGCTTCCCCCTGTC < 41bp 1 0.66304408502872 1 0.820430755615234 experiment 0.67391182994256 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYADM ENSG00000179820 CDS Human protein_coding chr19:54377053 chr19:54377048 nonsynonymous SNV 0.139 3 16 hm5C_associated_SNPs_45801 0 0 1 0 0 Nucleus 1 0.500231643920991 0.359138488769532 0.999536712158018 hm5C_site_44548 DeepMRMD:0.359138488769532;iRNA_m5C:0.999536712158018 44549 chr19 19656464 19656464 1 + C T UCEC 19656481 + 19656461 19656501 41 CACCGGTGCCCGCGGAGGACCCAGCTGCCTTCTCCATGCTG CACTGGTGCCCGCGGAGGACCCAGCTGCCTTCTCCATGCTG < 41bp 1 0.165337982340102 1 0.174917757511139 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CILP2 ENSG00000160161 CDS Human protein_coding chr19:19656481 chr19:19656464 nonsynonymous SNV 0.000 0 4 hm5C_associated_SNPs_45802 0 0 0 0 0 exosome 1 0.500231618448448 1 0.999536763103104 hm5C_site_44549 DeepMRMD:1;iRNA_m5C:0.999536763103104 44550 chr1 17265622 17265622 1 + C T UCEC 17265609 + 17265589 17265629 41 GCTCGCCCTGATCCACTCCGCCCTGCACAAGCGCCAGCTGC GCTCGCCCTGATCCACTCCGCCCTGCACAAGCGTCAGCTGC < 41bp 1 0.0864130470267148 1 0.241544187068939 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CROCC ENSG00000058453 CDS Human protein_coding chr1:17265609 chr1:17265622 synonymous SNV . 0 34 hm5C_associated_SNPs_45803 0 0 0 0 1 chromatin 1 0.500231644450803 1 0.999536711098395 hm5C_site_44550 DeepMRMD:1;iRNA_m5C:0.999536711098395 44551 chr19 13054431 13054431 1 + G A UCEC 13054419 + 13054399 13054439 41 GCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAAC GCATACGCTGAGGAGTTTGGCAACGAGACGTGAGGCGTAAC < 41bp 1 0.631186492749257 1 0.785386741161346 experiment 0.737627014501487 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CALR ENSG00000179218 CDS Human protein_coding chr19:13054419 chr19:13054431 stopgain 0.883 1 33 hm5C_associated_SNPs_45804 0 0 1 0 2 Ribosome 1 0.500231642731791 0.429226517677308 0.999536714536418 hm5C_site_44551 DeepMRMD:0.429226517677308;iRNA_m5C:0.999536714536418 44552 chr2 65299979 65299979 1 + C A UCEC 65299976 + 65299956 65299996 41 AGCAGCCAGGCCCTCGGGGTCTCCTCTGGACTGCTGAAAAC AGCAGCCAGGCCCTCGGGGTCTCATCTGGACTGCTGAAAAC < 41bp 1 0.381291983752455 1 0.224067360162735 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CEP68 ENSG00000011523 CDS Human protein_coding chr2:65299976 chr2:65299979 synonymous SNV . 0 24 hm5C_associated_SNPs_45805 0 0 0 0 0 Cytosol 1 0.500231643895884 1 0.999536712208231 hm5C_site_44552 DeepMRMD:1;iRNA_m5C:0.999536712208231 44553 chr3 37367180 37367180 1 + C T UCEC 37367165 + 37367145 37367185 41 TACAACTAAAGTTAAGGAGGCACTGTTAATTAAAACTTGCA TACAACTAAAGTTAAGGAGGCACTGTTAATTAAAATTTGCA < 41bp 1 0.0595136377452342 1 0.080351322889328 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367165 chr3:37367180 nonsynonymous SNV 0.009 0 36 hm5C_associated_SNPs_45806 0 0 1 0 0 Cytosol 1 0.500231644088878 1 0.999536711822243 hm5C_site_44553 DeepMRMD:1;iRNA_m5C:0.999536711822243 44554 chr3 37367180 37367180 1 + C T UCEC 37367167 + 37367147 37367187 41 CAACTAAAGTTAAGGAGGCACTGTTAATTAAAACTTGCACA CAACTAAAGTTAAGGAGGCACTGTTAATTAAAATTTGCACA < 41bp 1 0.0851323113004709 1 0.0467973351478577 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37367167 chr3:37367180 nonsynonymous SNV 0.009 0 34 hm5C_associated_SNPs_45807 0 0 1 0 0 Cytosol 1 0.500231650355047 1 0.999536699289906 hm5C_site_44554 DeepMRMD:1;iRNA_m5C:0.999536699289906 44555 chr15 39876523 39876523 1 + C T UCEC 39876541 + 39876521 39876561 41 GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG GGTCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG < 41bp 1 0.199568137163827 1 0.379682272672653 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876541 chr15:39876523 nonsynonymous SNV 0.992 0 3 hm5C_associated_SNPs_45808 0 0 1 0 1 cytosol 1 0.50023164392109 1 0.999536712157821 hm5C_site_44555 DeepMRMD:1;iRNA_m5C:0.999536712157821 44556 chr19 41106048 41106048 1 + G T UCEC 41106028 + 41106008 41106048 41 CGGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAG CGGCCCCGGGGGCCAGGGGGCCGGGGACTACTGAGAAGGAT < 41bp 1 0.539970547436038 1 0.810677170753479 experiment 0.920058905127925 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41106028 chr19:41106048 nonsynonymous SNV 0.996 2 41 hm5C_associated_SNPs_45809 0 0 0 0 2 Cytosol 1 0.500231643920959 0.378645658493042 0.999536712158083 hm5C_site_44556 DeepMRMD:0.378645658493042;iRNA_m5C:0.999536712158083 44557 chr2 135160677 135160677 1 + G A UCEC 135160666 + 135160646 135160686 41 TACGTGAAAAACCATGGTATCCTCAGTGGACGGGACCTGCA TACGTGAAAAACCATGGTATCCTCAGTGGACAGGACCTGCA < 41bp 1 0.199639659230959 1 0.067219078540802 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135160666 chr2:135160677 nonsynonymous SNV 0.978 3 32 hm5C_associated_SNPs_45811 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_44557 DeepMRMD:1;iRNA_m5C:0.999536712157814 44558 chr17 36508881 36508881 1 + G A UCEC 36508864 + 36508844 36508884 41 AGAGCTGGCTGCTTCAGCTGCGAGCCTGACAGACATGGGAG AGAGCTGGCTGCTTCAGCTGCGAGCCTGACAGACATGAGAG < 41bp 1 0.45773419233511 1 0.401047348976135 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOCS7 ENSG00000174111 CDS Human other chr17:36508864 chr17:36508881 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_45812 0 0 1 0 1 Cytosol 1 0.500223952020339 1 0.999552095959323 hm5C_site_44558 DeepMRMD:1;iRNA_m5C:0.999552095959323 44559 chr17 36508881 36508881 1 + G A UCEC 36508869 + 36508849 36508889 41 TGGCTGCTTCAGCTGCGAGCCTGACAGACATGGGAGGCTCT TGGCTGCTTCAGCTGCGAGCCTGACAGACATGAGAGGCTCT < 41bp 1 0.120734706620388 1 0.137900084257126 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SOCS7 ENSG00000174111 CDS Human other chr17:36508869 chr17:36508881 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_45813 0 0 1 0 1 Cytosol 1 0.500231644677096 1 0.999536710645808 hm5C_site_44559 DeepMRMD:1;iRNA_m5C:0.999536710645808 44560 chr19 49967978 49967978 1 + T C UCEC 49967998 + 49967978 49968018 41 TGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA CGTTCCCTCAACCCTGCCGGCTGGGCCTGAAATAGGGCCCA < 41bp 1 0.553076360367665 1 0.588594496250153 experiment 0.89384727926467 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967998 chr19:49967978 synonymous SNV . 0 1 hm5C_associated_SNPs_45814 0 0 1 0 2 Ribosome 1 0.500231643921092 0.822811007499694 0.999536712157815 hm5C_site_44560 DeepMRMD:0.822811007499694;iRNA_m5C:0.999536712157815 44561 chr7 36445879 36445879 1 + G A UCEC 36445868 + 36445848 36445888 41 CCCTCCCAGACCTCTGCTTTCAAATGCCTCGGCAACTCCAG CCCTCCCAGACCTCTGCTTTCAAATGCCTCGACAACTCCAG < 41bp 1 0.557778359372264 1 0.478291302919388 experiment 0.884443281255472 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ANLN ENSG00000011426 CDS Human protein_coding chr7:36445868 chr7:36445879 nonsynonymous SNV 0.087 2 32 hm5C_associated_SNPs_45815 0 0 1 0 1 Nucleus 1 0.500231647484416 1 0.999536705031168 hm5C_site_44561 DeepMRMD:1;iRNA_m5C:0.999536705031168 44562 chr1 154303954 154303954 1 + G A UCEC 154303952 + 154303932 154303972 41 AGCGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGAT AGCGATAACCAGGTGAATAACCACCAGTCTCAGGTGCTGAT < 41bp 1 0.100535375804722 1 0.0653940439224243 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154303952 chr1:154303954 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_45816 0 0 1 0 2 chromatin 1 0.500231643921081 1 0.999536712157838 hm5C_site_44562 DeepMRMD:1;iRNA_m5C:0.999536712157838 44563 chr1 155288058 155288058 1 + G A UCEC 155288044 + 155288024 155288064 41 TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTG TGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTAAACCTG < 41bp 1 0.243416102730994 1 0.203077048063278 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FDPS ENSG00000160752 CDS Human protein_coding chr1:155288044 chr1:155288058 synonymous SNV . 0 35 hm5C_associated_SNPs_45817 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44563 DeepMRMD:1;iRNA_m5C:0.999536712157815 44564 chr17 28958939 28958939 1 + G A UCEC 28958929 + 28958909 28958949 41 TGGGAGTGAGCAGCTAGACACCAATGACGAGAGTGATGTTA TGGGAGTGAGCAGCTAGACACCAATGACGAAAGTGATGTTA < 41bp 1 0.144029878550097 1 0.0642244815826416 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LOC107133515 ENSG00000214719;ENSG00000250462 ncRNA_exonic Human other chr17:28958929 chr17:28958939 . . 0 31 hm5C_associated_SNPs_45818 0 0 1 0 2 unknown 1 0.500231674134799 1 0.999536651730402 hm5C_site_44564 DeepMRMD:1;iRNA_m5C:0.999536651730402 44565 chrX 70517257 70517257 1 + G T UCEC 70517240 + 70517220 70517260 41 TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGAT TTTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGATGAT < 41bp 1 0.147198106363668 1 0.23172590136528 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517240 chrX:70517257 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_45819 0 0 1 0 2 Nucleus 1 0.500231643934783 1 0.999536712130435 hm5C_site_44565 DeepMRMD:1;iRNA_m5C:0.999536712130435 44566 chrX 70517257 70517257 1 + G T UCEC 70517241 + 70517221 70517261 41 TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGAGGATG TTTTAGATTTGATGAGGCGCCAAGAAGAACTTCGGATGATG < 41bp 1 0.681719997962007 1 0.20798197388649 experiment 0.636560004075986 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout NONO ENSG00000147140 CDS Human protein_coding chrX:70517241 chrX:70517257 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_45820 0 0 1 0 2 Nucleus 1 0.500195177980812 1 0.999609644038375 hm5C_site_44566 DeepMRMD:1;iRNA_m5C:0.999609644038375 44567 chrX 70517257 70517257 1 + G T UCEC 70517253 + 70517233 70517273 41 TGAGGCGCCAAGAAGAACTTCGGAGGATGGAAGAGCTGCAC TGAGGCGCCAAGAAGAACTTCGGATGATGGAAGAGCTGCAC < 41bp 1 0.455320794528122 1 0.726439476013184 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517253 chrX:70517257 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_45821 0 0 1 0 2 Nucleus 1 0.500231624069237 0.547121047973632 0.999536751861525 hm5C_site_44567 DeepMRMD:0.547121047973632;iRNA_m5C:0.999536751861525 44568 chr1 957732 957732 1 + A G UCEC 957712 + 957692 957732 41 AACCAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTGAA AACCAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTGAG < 41bp 1 0.495211399087168 1 0.204452008008957 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957712 chr1:957732 nonsynonymous SNV 0.991 2 41 hm5C_associated_SNPs_45822 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921094 1 0.999536712157812 hm5C_site_44568 DeepMRMD:1;iRNA_m5C:0.999536712157812 44569 chr1 957732 957732 1 + A G UCEC 957715 + 957695 957735 41 CAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTGAACCC CAGGTGTCCACTGGGGACACCAGGATCTTCTTTGTGAGCCC < 41bp 1 0.622728786447057 1 0.704408526420593 experiment 0.754542427105885 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957715 chr1:957732 nonsynonymous SNV 0.991 2 38 hm5C_associated_SNPs_45823 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 0.591182947158814 0.999536712157815 hm5C_site_44569 DeepMRMD:0.591182947158814;iRNA_m5C:0.999536712157815 44570 chr1 957732 957732 1 + A G UCEC 957724 + 957704 957744 41 ACTGGGGACACCAGGATCTTCTTTGTGAACCCTGCACCCCC ACTGGGGACACCAGGATCTTCTTTGTGAGCCCTGCACCCCC < 41bp 1 0.191197128169573 1 0.178483575582504 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957724 chr1:957732 nonsynonymous SNV 0.991 2 29 hm5C_associated_SNPs_45824 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44570 DeepMRMD:1;iRNA_m5C:0.999536712157815 44571 chr1 957732 957732 1 + A G UCEC 957744 + 957724 957764 41 CTTTGTGAACCCTGCACCCCCATACCTGTGGCCAGCCCACA CTTTGTGAGCCCTGCACCCCCATACCTGTGGCCAGCCCACA < 41bp 1 0.0591347979499837 1 0.153591692447662 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957744 chr1:957732 nonsynonymous SNV 0.991 2 9 hm5C_associated_SNPs_45825 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921895 1 0.99953671215621 hm5C_site_44571 DeepMRMD:1;iRNA_m5C:0.99953671215621 44572 chr5 138658570 138658570 1 + G A UCEC 138658571 + 138658551 138658591 41 TGCTAATTTAGGTGATGTGGCTTCTGATGGGAAAAAGGAAC TGCTAATTTAGGTGATGTGACTTCTGATGGGAAAAAGGAAC < 41bp 1 0.2102832591811 1 0.0449237525463104 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MATR3 ENSG00000015479 CDS Human protein_coding chr5:138658571 chr5:138658570 nonsynonymous SNV 0.916 0 20 hm5C_associated_SNPs_45826 0 0 1 0 0 Nucleus 1 0.500231643518935 1 0.999536712962129 hm5C_site_44572 DeepMRMD:1;iRNA_m5C:0.999536712962129 44573 chr17 78087039 78087039 1 + G C UCEC 78087058 + 78087038 78087078 41 AGCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT ACCGAGCCGGCCCAGCAGGCCATGAGGAAGGCCCTCACCCT < 41bp 1 0.688507765605486 1 0.300926029682159 experiment 0.622984468789028 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAA ENSG00000171298 CDS Human protein_coding chr17:78087058 chr17:78087039 nonsynonymous SNV 0.958 4 2 hm5C_associated_SNPs_45827 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643932049 1 0.999536712135902 hm5C_site_44573 DeepMRMD:1;iRNA_m5C:0.999536712135902 44574 chr6 109763765 109763765 1 + G A UCEC 109763767 + 109763747 109763787 41 TCCATGCCGAATACAATCGACAGAAGGACATCTACCTAGCA TCCATGCCGAATACAATCAACAGAAGGACATCTACCTAGCA < 41bp 1 0.591712591658636 1 0.458701401948929 experiment 0.816574816682728 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763767 chr6:109763765 nonsynonymous SNV 0.337 4 19 hm5C_associated_SNPs_45828 0 0 1 0 2 chromatin 1 0.50023164395924 1 0.99953671208152 hm5C_site_44574 DeepMRMD:1;iRNA_m5C:0.99953671208152 44575 chr4 48384653 48384653 1 + C T UCEC 48384660 + 48384640 48384680 41 CAATTCTACAAGACGGGGTACTTTTAGTGATCAGGAACTTG CAATTCTACAAGATGGGGTACTTTTAGTGATCAGGAACTTG < 41bp 1 0.0224295723001034 1 0.0167497098445892 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48384660 chr4:48384653 nonsynonymous SNV 0.997 4 14 hm5C_associated_SNPs_45830 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44575 DeepMRMD:1;iRNA_m5C:0.999536712157815 44576 chr17 41585003 41585003 1 + G A UCEC 41585007 + 41584987 41585027 41 GATCATCATGTTGGACGAGGCACATGAGAGGACAATTCACA GATCATCATGTTGGACAAGGCACATGAGAGGACAATTCACA < 41bp 1 0.317367580733533 1 0.17764738202095 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DHX8 ENSG00000067596 CDS Human protein_coding chr17:41585007 chr17:41585003 nonsynonymous SNV 0.308 3 17 hm5C_associated_SNPs_45831 0 0 1 0 1 Cytosol 1 0.50023164393312 1 0.999536712133759 hm5C_site_44576 DeepMRMD:1;iRNA_m5C:0.999536712133759 44577 chr7 2419050 2419050 1 + A G UCEC 2419036 + 2419016 2419056 41 TTTGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAA TTTGTCCCCTCAGGGGTGGACACTGACGAGCTGGGCAGCAA < 41bp 1 0.428582885683165 1 0.0847239196300507 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419036 chr7:2419050 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_45832 0 0 1 1 2 Ribosome 1 0.500324077823783 1 0.999351844352435 hm5C_site_44577 DeepMRMD:1;iRNA_m5C:0.999351844352435 44578 chr7 2419050 2419050 1 + A G UCEC 2419038 + 2419018 2419058 41 TGTCCCCTCAGGGGTGGACACTGACGAGCTGGACAGCAACG TGTCCCCTCAGGGGTGGACACTGACGAGCTGGGCAGCAACG < 41bp 1 0.462048055446428 1 0.0488315522670746 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419038 chr7:2419050 nonsynonymous SNV 1.000 4 33 hm5C_associated_SNPs_45833 0 0 1 1 2 Ribosome 1 0.500231646832672 1 0.999536706334657 hm5C_site_44578 DeepMRMD:1;iRNA_m5C:0.999536706334657 44579 chr7 2419050 2419050 1 + A G UCEC 2419051 + 2419031 2419071 41 GTGGACACTGACGAGCTGGACAGCAACGTGGACGACTGGGA GTGGACACTGACGAGCTGGGCAGCAACGTGGACGACTGGGA < 41bp 1 0.691100235743268 1 0.308981359004974 experiment 0.617799528513463 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2419051 chr7:2419050 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_45834 0 0 1 1 2 Ribosome 1 0.500131740437343 1 0.999736519125313 hm5C_site_44579 DeepMRMD:1;iRNA_m5C:0.999736519125313 44580 chr7 94917898 94917898 1 + C T UCEC 94917917 + 94917897 94917937 41 CCGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA CTGTTCAGGAATGGAGTGTGCAGCAGGTTTCTCACTGGTTA < 41bp 1 0.559741963718679 1 0.196966737508774 experiment 0.880516072562642 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94917917 chr7:94917898 synonymous SNV . 0 2 hm5C_associated_SNPs_45835 0 0 0 0 1 Nucleus 1 0.500231643928828 1 0.999536712142344 hm5C_site_44580 DeepMRMD:1;iRNA_m5C:0.999536712142344 44581 chr19 46025462 46025462 1 + G A UCEC 46025467 + 46025447 46025487 41 GCACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGA GCACATAGAGCGCCGAGTCTCCAATGCAGGTGATGCTCAGA < 41bp 1 0.204769297360263 1 0.404457092285156 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025467 chr19:46025462 synonymous SNV . 0 16 hm5C_associated_SNPs_45836 0 0 1 0 2 Ribosome 1 0.500323455037952 1 0.999353089924095 hm5C_site_44581 DeepMRMD:1;iRNA_m5C:0.999353089924095 44582 chr19 46025462 46025462 1 + G A UCEC 46025468 + 46025448 46025488 41 CACATAGAGCGCCGGGTCTCCAATGCAGGTGATGCTCAGAT CACATAGAGCGCCGAGTCTCCAATGCAGGTGATGCTCAGAT < 41bp 1 0.303054152924071 1 0.359345525503159 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VASP ENSG00000125753 CDS Human protein_coding chr19:46025468 chr19:46025462 synonymous SNV . 0 15 hm5C_associated_SNPs_45837 0 0 1 0 2 Ribosome 1 0.500231636426746 1 0.999536727146507 hm5C_site_44582 DeepMRMD:1;iRNA_m5C:0.999536727146507 44583 chrX 73042043 73042043 1 + A G UCEC 73042026 - 73042006 73042046 41 CCCTCATGAAAAATGACTGACCACTGCTGGGCAGCAGGAGG CCCCCATGAAAAATGACTGACCACTGCTGGGCAGCAGGAGG < 41bp 1 0.0606227326637094 1 0.164221853017807 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73042026 chrX:73042043 . . 0 4 hm5C_associated_SNPs_45838 0 0 1 0 0 unknown 1 0.500231765172706 1 0.999536469654588 hm5C_site_44583 DeepMRMD:1;iRNA_m5C:0.999536469654588 44584 chr10 102112174 102112174 1 + G A UCEC 102112188 + 102112168 102112208 41 CTCATCGTCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG CTCATCATCTGTGGAGCCACCGCTCTTACAAAGCTCGGCTG < 41bp 1 0.410396960768082 1 0.744503617286682 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SCD ENSG00000099194 CDS Human protein_coding chr10:102112188 chr10:102112174 nonsynonymous SNV 0.462 4 7 hm5C_associated_SNPs_45839 0 0 1 0 2 Ribosome 1 0.500231643963981 0.510992765426636 0.999536712072038 hm5C_site_44584 DeepMRMD:0.510992765426636;iRNA_m5C:0.999536712072038 44585 chr3 9854718 9854718 1 + G A UCEC 9854727 + 9854707 9854747 41 GATGGTCCATCGCTCAGGCCCCACCCTGCTGCCACCCCAGA GATGGTCCATCACTCAGGCCCCACCCTGCTGCCACCCCAGA < 41bp 1 0.0610620254553295 1 0.0436374545097351 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9854727 chr3:9854718 nonsynonymous SNV 0.001 0 12 hm5C_associated_SNPs_45840 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_44585 DeepMRMD:1;iRNA_m5C:0.999536712157815 44586 chr11 6629288 6629288 1 + C T UCEC 6629293 + 6629273 6629313 41 AAGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCC AAGGGACGATCATGGTTTCTCCCCCTTGCACTGGGCCTGCC < 41bp 1 0.28325204738743 1 0.554110288619995 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629293 chr11:6629288 synonymous SNV . 0 16 hm5C_associated_SNPs_45841 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643918467 0.89177942276001 0.999536712163066 hm5C_site_44586 DeepMRMD:0.89177942276001;iRNA_m5C:0.999536712163066 44587 chr11 6629288 6629288 1 + C T UCEC 6629294 + 6629274 6629314 41 AGGGACGATCATGGCTTCTCCCCCTTGCACTGGGCCTGCCG AGGGACGATCATGGTTTCTCCCCCTTGCACTGGGCCTGCCG < 41bp 1 0.196745568555617 1 0.0900666415691376 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ILK ENSG00000166333 CDS Human protein_coding chr11:6629294 chr11:6629288 synonymous SNV . 0 15 hm5C_associated_SNPs_45842 0 0 1 0 1 Endoplasmic reticulum 1 0.500231670147502 1 0.999536659704996 hm5C_site_44587 DeepMRMD:1;iRNA_m5C:0.999536659704996 44588 chr5 5457692 5457692 1 + C T UCEC 5457687 + 5457667 5457707 41 AGGTTTTAGTACAAAGTCATCGTGACGGTGGTAGTACTGAA AGGTTTTAGTACAAAGTCATCGTGATGGTGGTAGTACTGAA < 41bp 1 0.45420935730848 1 0.409289360046387 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ICE1 ENSG00000164151 CDS Human protein_coding chr5:5457687 chr5:5457692 synonymous SNV . 0 26 hm5C_associated_SNPs_45843 0 0 1 0 0 Nucleus 1 0.500231632611603 1 0.999536734776795 hm5C_site_44588 DeepMRMD:1;iRNA_m5C:0.999536734776795 44589 chr1 22331951 22331951 1 + G A UCEC 22331944 + 22331924 22331964 41 CCTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTG CCTCCTGGGCCACCAGGTTTCCCTGCAATATGAGAAAAGTG < 41bp 1 0.163904029526602 1 0.159767091274261 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331944 chr1:22331951 synonymous SNV . 0 28 hm5C_associated_SNPs_45845 0 0 0 0 2 Endoplasmic reticulum 1 0.500231644388516 1 0.999536711222968 hm5C_site_44589 DeepMRMD:1;iRNA_m5C:0.999536711222968 44590 chr1 22331951 22331951 1 + G A UCEC 22331945 + 22331925 22331965 41 CTCCTGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGG CTCCTGGGCCACCAGGTTTCCCTGCAATATGAGAAAAGTGG < 41bp 1 0.0625325315869721 1 0.156322956085205 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331945 chr1:22331951 synonymous SNV . 0 27 hm5C_associated_SNPs_45846 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44590 DeepMRMD:1;iRNA_m5C:0.999536712157815 44591 chr1 22331951 22331951 1 + G A UCEC 22331949 + 22331929 22331969 41 TGGGCCACCAGGTTTCCCTGCAGTATGAGAAAAGTGGAAGC TGGGCCACCAGGTTTCCCTGCAATATGAGAAAAGTGGAAGC < 41bp 1 0.38819866525377 1 0.235509008169174 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331949 chr1:22331951 synonymous SNV . 0 23 hm5C_associated_SNPs_45848 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921088 1 0.999536712157824 hm5C_site_44591 DeepMRMD:1;iRNA_m5C:0.999536712157824 44592 chr1 22331951 22331951 1 + G A UCEC 22331969 + 22331949 22331989 41 CAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG CAATATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGG < 41bp 1 0.178616959611658 1 0.266539990901947 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CELA3A ENSG00000142789 CDS Human protein_coding chr1:22331969 chr1:22331951 synonymous SNV . 0 3 hm5C_associated_SNPs_45849 0 0 0 0 2 Endoplasmic reticulum 1 0.500231714658291 1 0.999536570683418 hm5C_site_44592 DeepMRMD:1;iRNA_m5C:0.999536570683418 44593 chr21 46931088 46931088 1 + G A UCEC 46931104 + 46931084 46931124 41 GCCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC GCCCAGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCC < 41bp 1 0.0530393628263612 1 0.111429274082184 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931104 chr21:46931088 nonsynonymous SNV 0.071 3 5 hm5C_associated_SNPs_45851 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44593 DeepMRMD:1;iRNA_m5C:0.999536712157815 44594 chr21 46931088 46931088 1 + G A UCEC 46931105 + 46931085 46931125 41 CCCGGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT CCCAGGGCACGCATCTTCTCCTTTGACGGCAAGGACGTCCT < 41bp 1 0.0689193830849104 1 0.0468246936798096 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931105 chr21:46931088 nonsynonymous SNV 0.071 3 4 hm5C_associated_SNPs_45852 0 0 1 0 2 Nucleus 1 0.500231642229141 1 0.999536715541718 hm5C_site_44594 DeepMRMD:1;iRNA_m5C:0.999536715541718 44595 chr17 79663962 79663962 1 + G A UCEC 79663977 + 79663957 79663997 41 TGCACGGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGC TGCACAGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGC < 41bp 1 0.557163102069552 1 0.5112025141716 experiment 0.885673795860896 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663977 chr17:79663962 nonsynonymous SNV 0.016 0 6 hm5C_associated_SNPs_45853 0 0 1 0 1 Nucleus 1 0.500231645123617 0.9775949716568 0.999536709752766 hm5C_site_44595 DeepMRMD:0.9775949716568;iRNA_m5C:0.999536709752766 44596 chr17 79663962 79663962 1 + G A UCEC 79663980 + 79663960 79664000 41 ACGGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGCCCC ACAGCGTGTACATGAGCCAGCCGGCCCCTGCCGCTGGCCCC < 41bp 1 0.3733768026242 1 0.387857884168625 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79663980 chr17:79663962 nonsynonymous SNV 0.016 0 3 hm5C_associated_SNPs_45854 0 0 1 0 1 Nucleus 1 0.500231643917952 1 0.999536712164095 hm5C_site_44596 DeepMRMD:1;iRNA_m5C:0.999536712164095 44597 chr14 105927182 105927182 1 + C T UCEC 105927186 + 105927166 105927206 41 TGCCGCAGGGCGGGCCCGTGCTCTGCAGGGACGAGATGGAG TGCCGCAGGGCGGGCCTGTGCTCTGCAGGGACGAGATGGAG < 41bp 1 0.518085879972473 1 0.199661523103714 experiment 0.963828240055054 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MTA1 ENSG00000182979 CDS Human protein_coding chr14:105927186 chr14:105927182 synonymous SNV . 0 17 hm5C_associated_SNPs_45855 0 0 1 0 1 Cytosol 1 0.500231610122233 1 0.999536779755534 hm5C_site_44597 DeepMRMD:1;iRNA_m5C:0.999536779755534 44598 chr3 47041793 47041793 1 + C T UCEC 47041773 + 47041753 47041793 41 TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTC TCCTTCGCCACTGGATGGGCCGCGGCCCTTTCCTGCTGCTT < 41bp 1 0.320911609374677 1 0.48270919919014 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041773 chr3:47041793 nonsynonymous SNV 0.087 0 41 hm5C_associated_SNPs_45856 0 0 1 0 0 Nucleus 1 0.500231643921101 1 0.999536712157798 hm5C_site_44598 DeepMRMD:1;iRNA_m5C:0.999536712157798 44599 chr19 18960992 18960992 1 + C T UCEC 18961004 + 18960984 18961024 41 TGTCGCAACGTCTTCCTCCTCGGCTTCATCCCGGCCAAAGC TGTCGCAATGTCTTCCTCCTCGGCTTCATCCCGGCCAAAGC < 41bp 1 0.601649318487431 1 0.84890204668045 experiment 0.796701363025137 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UPF1 ENSG00000005007 CDS Human protein_coding chr19:18961004 chr19:18960992 synonymous SNV . 0 9 hm5C_associated_SNPs_45857 0 0 1 0 1 Nucleus 1 0.500231644921202 0.3021959066391 0.999536710157595 hm5C_site_44599 DeepMRMD:0.3021959066391;iRNA_m5C:0.999536710157595 44600 chr11 125513701 125513701 1 + C T UCEC 125513690 + 125513670 125513710 41 TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTT TTTGTTTTCTTTTTTAGGGGCAAAAAGGCCCTGAGTCACTT < 41bp 1 0.405062275239521 1 0.27319073677063 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513690 chr11:125513701 stopgain 0.996 0 32 hm5C_associated_SNPs_45858 0 0 1 3 2 Ribosome 1 0.50023164392109 1 0.999536712157819 hm5C_site_44600 DeepMRMD:1;iRNA_m5C:0.999536712157819 44601 chr11 125513701 125513701 1 + C T UCEC 125513698 + 125513678 125513718 41 CTTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGT CTTTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGT < 41bp 1 0.13303785512191 1 0.186926245689392 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513698 chr11:125513701 stopgain 0.996 0 24 hm5C_associated_SNPs_45859 0 0 1 3 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44601 DeepMRMD:1;iRNA_m5C:0.999536712157815 44602 chr11 125513701 125513701 1 + C T UCEC 125513699 + 125513679 125513719 41 TTTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTG TTTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTG < 41bp 1 0.371423849725464 1 0.18227207660675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513699 chr11:125513701 stopgain 0.996 0 23 hm5C_associated_SNPs_45860 0 0 1 3 2 Ribosome 1 0.500231643260005 1 0.99953671347999 hm5C_site_44602 DeepMRMD:1;iRNA_m5C:0.99953671347999 44603 chr11 125513701 125513701 1 + C T UCEC 125513700 + 125513680 125513720 41 TTTTTAGGGGCAAAAAGGCCCCGAGTCACTTCAGGTGGTGT TTTTTAGGGGCAAAAAGGCCCTGAGTCACTTCAGGTGGTGT < 41bp 1 0.274133184770787 1 0.0893861949443817 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125513700 chr11:125513701 stopgain 0.996 0 22 hm5C_associated_SNPs_45861 0 0 1 3 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44603 DeepMRMD:1;iRNA_m5C:0.999536712157815 44604 chr1 2419135 2419135 1 + A G UCEC 2419119 + 2419099 2419139 41 AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACAAATA AAGATCCTCTTCAAAGACGTCATTGAAACCATCAACGAATA < 41bp 1 0.0372445906741902 1 0.0375730097293854 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2419119 chr1:2419135 nonsynonymous SNV 0.997 3 37 hm5C_associated_SNPs_45862 0 0 0 0 2 nucleus 1 0.500231599724397 1 0.999536800551206 hm5C_site_44604 DeepMRMD:1;iRNA_m5C:0.999536800551206 44605 chr20 35866809 35866809 1 + G A UCEC 35866808 + 35866788 35866828 41 CCTCTTTCCTTTGGCAGGATCGCTGCAGAGCAGAGCAGTAG CCTCTTTCCTTTGGCAGGATCACTGCAGAGCAGAGCAGTAG < 41bp 1 0.252979479048282 1 0.101587027311325 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35866808 chr20:35866809 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_45863 0 0 1 0 2 Ribosome 1 0.500234147030436 1 0.999531705939127 hm5C_site_44605 DeepMRMD:1;iRNA_m5C:0.999531705939127 44606 chr8 21844756 21844756 1 + A G UCEC 21844767 + 21844747 21844787 41 GTAAGATCTACATTGGGGACCAAGTGCAGAAATCCTCTAAG GTAAGATCTGCATTGGGGACCAAGTGCAGAAATCCTCTAAG < 41bp 1 0.393761719078187 1 0.623611330986023 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control XPO7 ENSG00000130227 CDS Human protein_coding chr8:21844767 chr8:21844756 nonsynonymous SNV 1.000 4 10 hm5C_associated_SNPs_45864 0 0 1 0 1 Cytosol 1 0.500231643921092 0.752777338027954 0.999536712157815 hm5C_site_44606 DeepMRMD:0.752777338027954;iRNA_m5C:0.999536712157815 44607 chr11 75277419 75277419 1 + G A UCEC 75277402 + 75277382 75277422 41 CCACTTCCTGGCCATGCGCTCCCTCCTGCTTCTCAGCGCCT CCACTTCCTGGCCATGCGCTCCCTCCTGCTTCTCAGCACCT < 41bp 1 0.040233858979062 1 0.0284769833087921 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75277402 chr11:75277419 nonsynonymous SNV 0.005 0 38 hm5C_associated_SNPs_45865 0 0 1 0 1 Ribosome 1 0.50023164392117 1 0.999536712157659 hm5C_site_44607 DeepMRMD:1;iRNA_m5C:0.999536712157659 44608 chr11 75277419 75277419 1 + G A UCEC 75277406 + 75277386 75277426 41 TTCCTGGCCATGCGCTCCCTCCTGCTTCTCAGCGCCTTCTG TTCCTGGCCATGCGCTCCCTCCTGCTTCTCAGCACCTTCTG < 41bp 1 0.266141619802324 1 0.159561038017273 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75277406 chr11:75277419 nonsynonymous SNV 0.005 0 34 hm5C_associated_SNPs_45866 0 0 1 0 1 Ribosome 1 0.500231643921274 1 0.999536712157453 hm5C_site_44608 DeepMRMD:1;iRNA_m5C:0.999536712157453 44609 chr20 31024475 31024475 1 + G A UCEC 31024479 + 31024459 31024499 41 AGCGCCCCAGGCCTGCGGACCCGATGCCTCTTCCTGCTGAG AGCGCCCCAGGCCTGCAGACCCGATGCCTCTTCCTGCTGAG < 41bp 1 0.127279425958538 1 0.102092623710632 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31024479 chr20:31024475 synonymous SNV . 0 17 hm5C_associated_SNPs_45867 0 0 1 0 0 Nucleus 1 0.500231642242821 1 0.999536715514357 hm5C_site_44609 DeepMRMD:1;iRNA_m5C:0.999536715514357 44610 chr13 100920957 100920957 1 + A G UCEC 100920958 + 100920938 100920978 41 TTCAGGTTCTAGGTGATAAACATGGGAATGCTTTATGGCTT TTCAGGTTCTAGGTGATAAGCATGGGAATGCTTTATGGCTT < 41bp 1 0.465386105044442 1 0.404849469661713 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:100920958 chr13:100920957 synonymous SNV . 0 20 hm5C_associated_SNPs_45868 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643967958 1 0.999536712064084 hm5C_site_44610 DeepMRMD:1;iRNA_m5C:0.999536712064084 44611 chr19 2226640 2226640 1 + G A UCEC 2226642 + 2226622 2226662 41 CTGAGCAAGAGGCAGCTGGACGGCCTGGCTGGGCTGAAGGG CTGAGCAAGAGGCAGCTGAACGGCCTGGCTGGGCTGAAGGG < 41bp 1 0.277807333514769 1 0.280693113803864 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DOT1L ENSG00000104885 CDS Human protein_coding chr19:2226642 chr19:2226640 nonsynonymous SNV 0.116 1 19 hm5C_associated_SNPs_45869 0 0 1 0 0 Cytosol 1 0.500231643920907 1 0.999536712158187 hm5C_site_44611 DeepMRMD:1;iRNA_m5C:0.999536712158187 44612 chr17 43220894 43220894 1 + G A UCEC 43220912 + 43220892 43220932 41 TCGTCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG TCATCGTCCAGTGGCTCTTCCGAATGTTTCGGACCCAAAAG < 41bp 1 0.390319683575975 1 0.844249069690704 experiment 1 Functional Loss 31061524;GSE122264;BS-seq with improved protocol;Heart;Control ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43220912 chr17:43220894 nonsynonymous SNV 0.983 0 3 hm5C_associated_SNPs_45870 0 0 1 0 1 Cytosol 1 0.500231643915357 0.311501860618592 0.999536712169285 hm5C_site_44612 DeepMRMD:0.311501860618592;iRNA_m5C:0.999536712169285 44613 chr14 65007621 65007621 1 + C T UCEC 65007630 + 65007610 65007650 41 ACCTATTCGTGCGTCGGGGTCTTCCAACATGGCAAGGTGGA ACCTATTCGTGTGTCGGGGTCTTCCAACATGGCAAGGTGGA < 41bp 1 0.124099522165842 1 0.0674143433570862 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65007630 chr14:65007621 synonymous SNV . 0 12 hm5C_associated_SNPs_45871 0 0 0 0 1 Cytosol 1 0.500231643921064 1 0.999536712157872 hm5C_site_44613 DeepMRMD:1;iRNA_m5C:0.999536712157872 44614 chr20 62562233 62562233 1 + G A UCEC 62562230 + 62562210 62562250 41 TTTGTCTTCTGCGGCCTCCTCACGTGCTGCTACTGCTGCTG TTTGTCTTCTGCGGCCTCCTCACATGCTGCTACTGCTGCTG < 41bp 1 0.435484054798577 1 0.428897887468338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562230 chr20:62562233 synonymous SNV . 0 24 hm5C_associated_SNPs_45872 0 0 1 6 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_44614 DeepMRMD:1;iRNA_m5C:0.999536712157812 44615 chr21 45400944 45400944 1 + G A UCEC 45400940 + 45400920 45400960 41 GTTTAAGCCTGCCCGGAGGCCGTGGACCCTCCTGAACTTCC GTTTAAGCCTGCCCGGAGGCCGTGAACCCTCCTGAACTTCC < 41bp 1 0.543732276045255 1 0.228305041790009 experiment 0.912535447909491 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGPAT3 ENSG00000160216 CDS Human protein_coding chr21:45400940 chr21:45400944 stopgain 0.934 1 25 hm5C_associated_SNPs_45873 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643920869 1 0.999536712158261 hm5C_site_44615 DeepMRMD:1;iRNA_m5C:0.999536712158261 44616 chr19 10561581 10561581 1 + G A UCEC 10561575 + 10561555 10561595 41 TGTCTGGAGCAGCTGGAGACCATGCAGACCTATCGCTCTGT TGTCTGGAGCAGCTGGAGACCATGCAAACCTATCGCTCTGT < 41bp 1 0.214857435543569 1 0.44240140914917 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561575 chr19:10561581 synonymous SNV . 0 27 hm5C_associated_SNPs_45874 0 0 1 0 2 chromatin 1 0.500231643921055 1 0.99953671215789 hm5C_site_44616 DeepMRMD:1;iRNA_m5C:0.99953671215789 44617 chr8 41355102 41355102 1 + C T UCEC 41355103 + 41355083 41355123 41 AAGCAGAGAAGCTCGGCGGCCAGTCATATCTCGAAGGTTGT AAGCAGAGAAGCTCGGCGGTCAGTCATATCTCGAAGGTTGT < 41bp 1 0.173211925604444 1 0.109503954648972 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355103 chr8:41355102 synonymous SNV . 0 20 hm5C_associated_SNPs_45875 0 0 1 2 2 Ribosome 1 0.500231643933535 1 0.99953671213293 hm5C_site_44617 DeepMRMD:1;iRNA_m5C:0.99953671213293 44618 chr1 230379169 230379169 1 + C T UCEC 230379152 + 230379132 230379172 41 AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGCGGA AATGAGCACTGGCTGGAGCCCCTCCTGGAAAGGGTGGTGGA < 41bp 1 0.0669520406048379 1 0.11726787686348 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230379152 chr1:230379169 nonsynonymous SNV 0.667 1 38 hm5C_associated_SNPs_45876 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44618 DeepMRMD:1;iRNA_m5C:0.999536712157815 44619 chr7 148979306 148979306 1 + C T UCEC 148979322 + 148979302 148979342 41 CAACCGCAACCACCACCTGGCCGTGCACATGCAGACCCACG CAACTGCAACCACCACCTGGCCGTGCACATGCAGACCCACG < 41bp 1 0.0590174557715489 1 0.0385584533214569 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148979322 chr7:148979306 nonsynonymous SNV 0.995 1 5 hm5C_associated_SNPs_45877 0 0 0 0 0 chromatin 1 0.500313503046866 1 0.999372993906268 hm5C_site_44619 DeepMRMD:1;iRNA_m5C:0.999372993906268 44620 chr1 145663174 145663174 1 + G T UCEC 145663167 + 145663147 145663187 41 GGTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTT GGTCTTTACTAGCTTTGGGGCCATTTGTATCACACGATGTT < 41bp 1 0.0218647505549447 1 0.0291571617126465 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RNF115 ENSG00000121848 CDS Human other chr1:145663167 chr1:145663174 nonsynonymous SNV . 0 28 hm5C_associated_SNPs_45878 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44620 DeepMRMD:1;iRNA_m5C:0.999536712157815 44621 chr1 145663174 145663174 1 + G T UCEC 145663168 + 145663148 145663188 41 GTCTTTACTAGCTTTGGGGCCATTTGGATCACACGATGTTT GTCTTTACTAGCTTTGGGGCCATTTGTATCACACGATGTTT < 41bp 1 0.0296107914315308 1 0.0640210807323456 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RNF115 ENSG00000121848 CDS Human other chr1:145663168 chr1:145663174 nonsynonymous SNV . 0 27 hm5C_associated_SNPs_45879 0 0 1 0 1 Nucleus 1 0.500231469020784 1 0.999537061958432 hm5C_site_44621 DeepMRMD:1;iRNA_m5C:0.999537061958432 44622 chr16 90028247 90028247 1 + A G UCEC 90028230 + 90028210 90028250 41 TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAA TGGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACGCAA < 41bp 1 0.435097133237966 1 0.246587455272675 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028230 chr16:90028247 nonsynonymous SNV 0.905 0 38 hm5C_associated_SNPs_45880 0 0 1 0 1 Ribosome 1 0.500231547609779 1 0.999536904780443 hm5C_site_44622 DeepMRMD:1;iRNA_m5C:0.999536904780443 44623 chr16 90028247 90028247 1 + A G UCEC 90028231 + 90028211 90028251 41 GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACACAAC GGAACGACCTGGCTGTGATCCCTGCACGCGTTGTACGCAAC < 41bp 1 0.122026839441194 1 0.486598938703537 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028231 chr16:90028247 nonsynonymous SNV 0.905 0 37 hm5C_associated_SNPs_45881 0 0 1 0 1 Ribosome 1 0.500231643842479 1 0.999536712315041 hm5C_site_44623 DeepMRMD:1;iRNA_m5C:0.999536712315041 44624 chr3 47041674 47041674 1 + G A UCEC 47041673 + 47041653 47041693 41 CCTTTGACCTGGGCCTGGAACGGTCTAGTGTAGGATCAGGC CCTTTGACCTGGGCCTGGAACAGTCTAGTGTAGGATCAGGC < 41bp 1 0.091635608829415 1 0.467337638139725 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47041673 chr3:47041674 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_45882 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44624 DeepMRMD:1;iRNA_m5C:0.999536712157815 44625 chr19 34959962 34959962 1 + G A UCEC 34959978 + 34959958 34959998 41 TGACGTTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA TGACATTCTCATAGTTGATTCAGATGAAGAAGATTCTTCAA < 41bp 1 0.442477231690548 1 0.190346479415894 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBA2 ENSG00000126261 CDS Human protein_coding chr19:34959978 chr19:34959962 nonsynonymous SNV 0.984 1 5 hm5C_associated_SNPs_45884 0 0 1 0 1 Cytosol 1 0.50023164392086 1 0.99953671215828 hm5C_site_44625 DeepMRMD:1;iRNA_m5C:0.99953671215828 44626 chr19 4960697 4960697 1 + G T UCEC 4960706 + 4960686 4960726 41 TTTCGGGCACAGGTGTTCAGCTGCCCTGCCTGCCGCTACGA TTTCGGGCACATGTGTTCAGCTGCCCTGCCTGCCGCTACGA < 41bp 1 0.327512458205526 1 0.0448226928710938 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4960706 chr19:4960697 . 0.964 0 12 hm5C_associated_SNPs_45885 0 0 0 0 1 chromatin 1 0.500231641086161 1 0.999536717827679 hm5C_site_44626 DeepMRMD:1;iRNA_m5C:0.999536717827679 44627 chr15 72855817 72855817 1 + G A UCEC 72855834 + 72855814 72855854 41 TTCGCTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT TTCACTGCAAATGTGGGCGCCAATTTTGGTAAGCAAGTGAT < 41bp 1 0.0628106199966617 1 0.125126212835312 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72855834 chr15:72855817 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_45886 0 0 1 0 2 Cytosol 1 0.500231643921068 1 0.999536712157864 hm5C_site_44627 DeepMRMD:1;iRNA_m5C:0.999536712157864 44628 chr16 88495391 88495391 1 + C T UCEC 88495410 + 88495390 88495430 41 GCCTTTCCCCGCGGGGGGCCCCGAGTGGCAGGGGGGCAGCC GTCTTTCCCCGCGGGGGGCCCCGAGTGGCAGGGGGGCAGCC < 41bp 1 0.230587643670374 1 0.704604983329773 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88495410 chr16:88495391 nonsynonymous SNV 0.000 0 2 hm5C_associated_SNPs_45887 0 0 0 0 0 exosome 1 0.500231643921092 0.590790033340454 0.999536712157815 hm5C_site_44628 DeepMRMD:0.590790033340454;iRNA_m5C:0.999536712157815 44629 chr16 88495391 88495391 1 + C T UCEC 88495411 + 88495391 88495431 41 CCTTTCCCCGCGGGGGGCCCCGAGTGGCAGGGGGGCAGCCA TCTTTCCCCGCGGGGGGCCCCGAGTGGCAGGGGGGCAGCCA < 41bp 1 0.514493757104224 1 0.818628668785095 experiment 0.971012485791552 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88495411 chr16:88495391 nonsynonymous SNV 0.000 0 1 hm5C_associated_SNPs_45888 0 0 0 0 0 exosome 1 0.500231640757605 0.36274266242981 0.99953671848479 hm5C_site_44629 DeepMRMD:0.36274266242981;iRNA_m5C:0.99953671848479 44630 chr19 39215146 39215146 1 + C T UCEC 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGTGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC < 41bp 1 0.307966762205892 1 0.709546387195587 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215146 nonsynonymous SNV 0.998 3 4 hm5C_associated_SNPs_45890 0 0 1 0 2 Nucleus 1 0.500231643921092 0.580907225608826 0.999536712157815 hm5C_site_44630 DeepMRMD:0.580907225608826;iRNA_m5C:0.999536712157815 44631 chr1 161134340 161134340 1 + G A UCEC 161134359 + 161134339 161134379 41 CGGCAGAAAACTCGAAGTACCAAAAAGTTGACAGTACAAAG CAGCAGAAAACTCGAAGTACCAAAAAGTTGACAGTACAAAG < 41bp 1 0.423318313263539 1 0.414675414562225 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP21 ENSG00000143258 CDS Human protein_coding chr1:161134359 chr1:161134340 nonsynonymous SNV 1.000 2 2 hm5C_associated_SNPs_45891 0 0 1 0 1 Cytosol 1 0.500231643921296 1 0.999536712157408 hm5C_site_44631 DeepMRMD:1;iRNA_m5C:0.999536712157408 44632 chr1 156105717 156105717 1 + G A UCEC 156105721 + 156105701 156105741 41 AAGGAGGCGAAGCTTCGAGACCTGGAGGACTCACTGGCCCG AAGGAGGCGAAGCTTCAAGACCTGGAGGACTCACTGGCCCG < 41bp 1 0.413259732005415 1 0.460228234529495 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105721 chr1:156105717 nonsynonymous SNV 0.997 3 17 hm5C_associated_SNPs_45892 0 0 1 0 1 Cytosol 1 0.500231653646647 1 0.999536692706706 hm5C_site_44632 DeepMRMD:1;iRNA_m5C:0.999536692706706 44633 chr1 156105717 156105717 1 + G A UCEC 156105730 + 156105710 156105750 41 AAGCTTCGAGACCTGGAGGACTCACTGGCCCGTGAGCGGGA AAGCTTCAAGACCTGGAGGACTCACTGGCCCGTGAGCGGGA < 41bp 1 0.260562288495845 1 0.164394348859787 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156105730 chr1:156105717 nonsynonymous SNV 0.997 3 8 hm5C_associated_SNPs_45893 0 0 1 0 1 Cytosol 1 0.50023164391753 1 0.999536712164939 hm5C_site_44633 DeepMRMD:1;iRNA_m5C:0.999536712164939 44634 chr3 49568297 49568297 1 + A G UCEC 49568306 + 49568286 49568326 41 CCACACCCTGGAGGGCCTCCCCCTTGACACTGATAAGGGTG CCACACCCTGGGGGGCCTCCCCCTTGACACTGATAAGGGTG < 41bp 1 0.245931512157135 1 0.321514666080475 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DAG1 ENSG00000173402 CDS Human protein_coding chr3:49568306 chr3:49568297 nonsynonymous SNV 0.971 3 12 hm5C_associated_SNPs_45894 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44634 DeepMRMD:1;iRNA_m5C:0.999536712157815 44635 chr10 51582892 51582892 1 + G A UCEC 51582890 + 51582870 51582910 41 AGCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTA AGCTCCTTACATACCCAGCACCAACCCCCAGGACTGGCTTA < 41bp 1 0.0415874043372268 1 0.0394658148288727 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582890 chr10:51582892 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_45895 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44635 DeepMRMD:1;iRNA_m5C:0.999536712157815 44636 chr10 51582892 51582892 1 + G A UCEC 51582891 + 51582871 51582911 41 GCTCCTTACATACCCAGCACCGACCCCCAGGACTGGCTTAC GCTCCTTACATACCCAGCACCAACCCCCAGGACTGGCTTAC < 41bp 1 0.170519190390019 1 0.0695391297340393 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582891 chr10:51582892 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_45896 0 0 1 0 2 Cytosol 1 0.500231643921088 1 0.999536712157823 hm5C_site_44636 DeepMRMD:1;iRNA_m5C:0.999536712157823 44637 chr10 51582892 51582892 1 + G A UCEC 51582895 + 51582875 51582915 41 CTTACATACCCAGCACCGACCCCCAGGACTGGCTTACCCAA CTTACATACCCAGCACCAACCCCCAGGACTGGCTTACCCAA < 41bp 1 0.673848501897225 1 0.317480623722076 experiment 0.652302996205551 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NCOA4 ENSG00000138293 CDS Human other chr10:51582895 chr10:51582892 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_45897 0 0 1 0 2 Cytosol 1 0.500231643921097 1 0.999536712157805 hm5C_site_44637 DeepMRMD:1;iRNA_m5C:0.999536712157805 44638 chr9 130107716 130107716 1 + C A UCEC 130107699 + 130107679 130107719 41 AAGGCACTAAAACTGAAATCCATTGTGAGAGGGGATGCTCC AAGGCACTAAAACTGAAATCCATTGTGAGAGGGGATGATCC < 41bp 1 0.0501834017563684 1 0.213299661874771 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130107699 chr9:130107716 nonsynonymous SNV 0.996 4 38 hm5C_associated_SNPs_45898 0 0 0 0 2 Nucleus 1 0.50023164392109 1 0.999536712157821 hm5C_site_44638 DeepMRMD:1;iRNA_m5C:0.999536712157821 44639 chr13 76415806 76415806 1 + C T UCEC 76415812 + 76415792 76415832 41 TGTCTCTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAA TGTCTCTGACCACATGGGAGCCCTCTCTTGCCACCTGGGAA < 41bp 1 0.0340248796454738 1 0.0412544906139374 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76415812 chr13:76415806 nonsynonymous SNV 0.867 3 15 hm5C_associated_SNPs_45899 0 0 1 0 1 Cytosol 1 0.500231643921671 1 0.999536712156659 hm5C_site_44639 DeepMRMD:1;iRNA_m5C:0.999536712156659 44640 chr13 76415806 76415806 1 + C T UCEC 76415814 + 76415794 76415834 41 TCTCTGACCACACGGGAGCCCTCTCTTGCCACCTGGGAAGC TCTCTGACCACATGGGAGCCCTCTCTTGCCACCTGGGAAGC < 41bp 1 0.217096279017568 1 0.180630505084991 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76415814 chr13:76415806 nonsynonymous SNV 0.867 3 13 hm5C_associated_SNPs_45900 0 0 1 0 1 Cytosol 1 0.500231643921117 1 0.999536712157766 hm5C_site_44640 DeepMRMD:1;iRNA_m5C:0.999536712157766 44641 chr18 48604724 48604724 1 + C G UCEC 48604710 + 48604690 48604730 41 TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGACAGAGCA TTTTGTGAAAGGCTGGGGACCGGATTACCCAAGAGAGAGCA < 41bp 1 0.449544642591805 1 0.625366270542145 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604710 chr18:48604724 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_45901 0 0 1 0 1 Cytosol 1 0.500231643921092 0.74926745891571 0.999536712157815 hm5C_site_44641 DeepMRMD:0.74926745891571;iRNA_m5C:0.999536712157815 44642 chr7 44802552 44802552 1 + C T UCEC 44802539 + 44802519 44802559 41 GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGCGCCTCCT GTCCGCTCGGTGCTGCAGGGCCTCCTCAAAAAGTGCCTCCT < 41bp 1 0.0302035923725554 1 0.0332789123058319 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802539 chr7:44802552 nonsynonymous SNV 0.992 4 34 hm5C_associated_SNPs_45902 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44642 DeepMRMD:1;iRNA_m5C:0.999536712157815 44643 chr17 30806297 30806297 1 + G A UCEC 30806305 + 30806285 30806325 41 GGGCAGAGCTCCGGGATGACCCAATCATCAGCACACACTTG GGGCAGAGCTCCAGGATGACCCAATCATCAGCACACACTTG < 41bp 1 0.165114892806962 1 0.211541950702667 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30806305 chr17:30806297 nonsynonymous SNV 1.000 1 13 hm5C_associated_SNPs_45903 0 0 1 0 2 Ribosome 1 0.500230139484474 1 0.999539721031052 hm5C_site_44643 DeepMRMD:1;iRNA_m5C:0.999539721031052 44644 chr9 135073647 135073647 1 + G T UCEC 135073628 + 135073608 135073648 41 AACGGGCGCACCTGGCAGCCCTACCAGTTCTACGCCGAGGA AACGGGCGCACCTGGCAGCCCTACCAGTTCTACGCCGAGTA < 41bp 1 0.180279305797227 1 0.0597870945930481 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135073628 chr9:135073647 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_45904 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44644 DeepMRMD:1;iRNA_m5C:0.999536712157815 44645 chr1 957741 957741 1 + C T UCEC 957724 + 957704 957744 41 ACTGGGGACACCAGGATCTTCTTTGTGAACCCTGCACCCCC ACTGGGGACACCAGGATCTTCTTTGTGAACCCTGCACTCCC < 41bp 1 0.165882523113728 1 0.0650539100170135 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957724 chr1:957741 nonsynonymous SNV 0.736 1 38 hm5C_associated_SNPs_45905 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44645 DeepMRMD:1;iRNA_m5C:0.999536712157815 44646 chr1 957741 957741 1 + C T UCEC 957744 + 957724 957764 41 CTTTGTGAACCCTGCACCCCCATACCTGTGGCCAGCCCACA CTTTGTGAACCCTGCACTCCCATACCTGTGGCCAGCCCACA < 41bp 1 0.0629322952732287 1 0.194223552942276 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGRN ENSG00000188157 CDS Human protein_coding chr1:957744 chr1:957741 nonsynonymous SNV 0.736 1 18 hm5C_associated_SNPs_45906 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164392109 1 0.999536712157821 hm5C_site_44646 DeepMRMD:1;iRNA_m5C:0.999536712157821 44647 chr7 91981900 91981900 1 + C T UCEC 91981887 + 91981867 91981907 41 AGGGTCAAATACATCTGGATCTGATACACTCAGCTTCCCAT AGGGTCAAATACATCTGGATCTGATACACTCAGTTTCCCAT < 41bp 1 0.255194399085134 1 0.0437774062156677 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:91981887 chr7:91981900 synonymous SNV . 0 34 hm5C_associated_SNPs_45907 0 0 1 0 1 Cytosol 1 0.500231361021397 1 0.999537277957206 hm5C_site_44647 DeepMRMD:1;iRNA_m5C:0.999537277957206 44648 chr12 51117078 51117078 1 + C T UCEC 51117087 + 51117067 51117107 41 CCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATG CCTCACGGCCATGCTGCCCACTGTCCGAATGATTGTTGATG < 41bp 1 0.0902602636170286 1 0.064265251159668 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DIP2B ENSG00000066084 CDS Human protein_coding chr12:51117087 chr12:51117078 nonsynonymous SNV 0.600 4 12 hm5C_associated_SNPs_45908 0 0 1 0 2 Nucleus 1 0.500231643744133 1 0.999536712511734 hm5C_site_44648 DeepMRMD:1;iRNA_m5C:0.999536712511734 44649 chr5 454099 454099 1 + G A UCEC 454080 + 454060 454100 41 ATGTACCACCAAGCCCTGAGCACGCGGATGCAGGACCTCGC ATGTACCACCAAGCCCTGAGCACGCGGATGCAGGACCTCAC < 41bp 1 0.617453911214753 1 0.350242555141449 experiment 0.765092177570494 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXOC3 ENSG00000180104 CDS Human protein_coding chr5:454080 chr5:454099 nonsynonymous SNV 0.017 1 40 hm5C_associated_SNPs_45909 0 0 1 0 1 Ribosome 1 0.500231642083437 1 0.999536715833126 hm5C_site_44649 DeepMRMD:1;iRNA_m5C:0.999536715833126 44650 chr12 72094698 72094698 1 + G A UCEC 72094681 + 72094661 72094701 41 AAGGCACATAGCAGGGAAACCCATTCTTGATAACAACGCAG AAGGCACATAGCAGGGAAACCCATTCTTGATAACAACACAG < 41bp 1 0.0890282125250736 1 0.0961523950099945 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TMEM19 ENSG00000139291 CDS Human protein_coding chr12:72094681 chr12:72094698 nonsynonymous SNV 0.921 4 38 hm5C_associated_SNPs_45910 0 0 0 0 0 Endoplasmic reticulum 1 0.500230641709815 1 0.99953871658037 hm5C_site_44650 DeepMRMD:1;iRNA_m5C:0.99953871658037 44651 chr16 57243050 57243050 1 + G A UCEC 57243043 + 57243023 57243063 41 GAGTTATTCCACTGGAAGATCCACTGGGACCAGCTGTTATA GAGTTATTCCACTGGAAGATCCACTGGAACCAGCTGTTATA < 41bp 1 0.136164988852317 1 0.0704048275947571 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57243043 chr16:57243050 nonsynonymous SNV 0.997 4 28 hm5C_associated_SNPs_45911 0 0 1 0 2 Ribosome 1 0.500231643921094 1 0.999536712157811 hm5C_site_44651 DeepMRMD:1;iRNA_m5C:0.999536712157811 44652 chr19 42848894 42848894 1 + C T UCEC 42848907 + 42848887 42848927 41 TTCGTCACGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT TTCGTCATGTCCCTGGAGGCCTGCGTCACCCAGAGCTTCCT < 41bp 1 0.339031760214796 1 0.166937291622162 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42848907 chr19:42848894 nonsynonymous SNV 0.525 3 8 hm5C_associated_SNPs_45912 0 0 1 0 2 Endoplasmic reticulum 1 0.50023164392139 1 0.99953671215722 hm5C_site_44652 DeepMRMD:1;iRNA_m5C:0.99953671215722 44653 chr16 67572597 67572597 1 + C T UCEC 67572603 + 67572583 67572623 41 CGGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCG CGGTCTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCG < 41bp 1 0.0730226004295467 1 0.168044835329056 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572603 chr16:67572597 nonsynonymous SNV 0.955 1 15 hm5C_associated_SNPs_45913 0 0 0 0 2 unknown 1 0.50023164392331 1 0.99953671215338 hm5C_site_44653 DeepMRMD:1;iRNA_m5C:0.99953671215338 44654 chr16 67572597 67572597 1 + C T UCEC 67572604 + 67572584 67572624 41 GGTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGC GGTCTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCGC < 41bp 1 0.533684065172073 1 0.568321168422699 experiment 0.932631869655854 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572604 chr16:67572597 nonsynonymous SNV 0.955 1 14 hm5C_associated_SNPs_45914 0 0 0 0 2 unknown 1 0.500231643921092 0.863357663154602 0.999536712157815 hm5C_site_44654 DeepMRMD:0.863357663154602;iRNA_m5C:0.999536712157815 44655 chr16 67572597 67572597 1 + C T UCEC 67572605 + 67572585 67572625 41 GTCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCT GTCTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCGCT < 41bp 1 0.149071129613699 1 0.296148896217346 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572605 chr16:67572597 nonsynonymous SNV 0.955 1 13 hm5C_associated_SNPs_45915 0 0 0 0 2 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_44655 DeepMRMD:1;iRNA_m5C:0.999536712157814 44656 chr16 67572597 67572597 1 + C T UCEC 67572606 + 67572586 67572626 41 TCTTCAGCCCGCCGGGGCCCCCACGGAAGCCCCCCGCGCTC TCTTCAGCCCGTCGGGGCCCCCACGGAAGCCCCCCGCGCTC < 41bp 1 0.439333151584371 1 0.264592796564102 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572606 chr16:67572597 nonsynonymous SNV 0.955 1 12 hm5C_associated_SNPs_45916 0 0 0 0 2 unknown 1 0.500231643921097 1 0.999536712157805 hm5C_site_44656 DeepMRMD:1;iRNA_m5C:0.999536712157805 44657 chr1 110172971 110172971 1 + C T UCEC 110172951 + 110172931 110172971 41 TCCTCAGCTATCACCGGAATCCGCTACCGGAGTACCTGTCC TCCTCAGCTATCACCGGAATCCGCTACCGGAGTACCTGTCT < 41bp 1 0.198017933821046 1 0.243410170078278 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110172951 chr1:110172971 synonymous SNV . 0 41 hm5C_associated_SNPs_45919 0 0 1 0 0 Cytosol 1 0.500232058752906 1 0.999535882494189 hm5C_site_44657 DeepMRMD:1;iRNA_m5C:0.999535882494189 44658 chr16 85100863 85100863 1 + G A UCEC 85100859 + 85100839 85100879 41 GAATGACATGGGCGAGTCGCCCTCGCACCCGTCCTGGGACC GAATGACATGGGCGAGTCGCCCTCACACCCGTCCTGGGACC < 41bp 1 0.20065019668029 1 0.0661791265010834 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85100859 chr16:85100863 synonymous SNV . 0 25 hm5C_associated_SNPs_45920 0 0 0 0 0 Nucleus 1 0.50023167678446 1 0.999536646431081 hm5C_site_44658 DeepMRMD:1;iRNA_m5C:0.999536646431081 44659 chr12 132546849 132546849 1 + G A UCEC 132546853 + 132546833 132546873 41 CCCCGGCACGGTCTTTGGTGCCCCAAGTGTCCCAAGGTAAA CCCCGGCACGGTCTTTAGTGCCCCAAGTGTCCCAAGGTAAA < 41bp 1 0.148998498890017 1 0.0901011228561401 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control EP400 ENSG00000183495 CDS Human protein_coding chr12:132546853 chr12:132546849 synonymous SNV . 0 17 hm5C_associated_SNPs_45921 0 0 1 0 1 Cytosol 1 0.500231644150104 1 0.999536711699791 hm5C_site_44659 DeepMRMD:1;iRNA_m5C:0.999536711699791 Multiple continuous traits in DGI samples 44660 chr19 50339144 50339144 1 + G A UCEC 50339146 + 50339126 50339166 41 CTCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAAC CTCCTGGACCCATCCTTCAGCCCCAGAACCCTGGGGCCAAC < 41bp 1 0.461871281646478 1 0.0750053524971008 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339146 chr19:50339144 nonsynonymous SNV 0.998 3 19 hm5C_associated_SNPs_45922 0 0 1 0 1 chromatin 1 0.500231637264208 1 0.999536725471585 hm5C_site_44660 DeepMRMD:1;iRNA_m5C:0.999536725471585 44661 chr19 50339144 50339144 1 + G A UCEC 50339147 + 50339127 50339167 41 TCCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACC TCCTGGACCCATCCTTCAGCCCCAGAACCCTGGGGCCAACC < 41bp 1 0.203189603500984 1 0.043927013874054 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339147 chr19:50339144 nonsynonymous SNV 0.998 3 18 hm5C_associated_SNPs_45923 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_44661 DeepMRMD:1;iRNA_m5C:0.999536712157815 44662 chr19 50339144 50339144 1 + G A UCEC 50339148 + 50339128 50339168 41 CCTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCC CCTGGACCCATCCTTCAGCCCCAGAACCCTGGGGCCAACCC < 41bp 1 0.468284284513947 1 0.0582012534141541 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339148 chr19:50339144 nonsynonymous SNV 0.998 3 17 hm5C_associated_SNPs_45924 0 0 1 0 1 chromatin 1 0.500231643891907 1 0.999536712216186 hm5C_site_44662 DeepMRMD:1;iRNA_m5C:0.999536712216186 44663 chr19 50339144 50339144 1 + G A UCEC 50339149 + 50339129 50339169 41 CTGGACCCATCCTTCGGCCCCAGAACCCTGGGGCCAACCCT CTGGACCCATCCTTCAGCCCCAGAACCCTGGGGCCAACCCT < 41bp 1 0.421090665764961 1 0.159334570169449 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339149 chr19:50339144 nonsynonymous SNV 0.998 3 16 hm5C_associated_SNPs_45925 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_44663 DeepMRMD:1;iRNA_m5C:0.999536712157815 44664 chr19 50339144 50339144 1 + G A UCEC 50339162 + 50339142 50339182 41 TCGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC TCAGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCC < 41bp 1 0.0166909787634916 1 0.0425904989242554 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339162 chr19:50339144 nonsynonymous SNV 0.998 3 3 hm5C_associated_SNPs_45926 0 0 1 0 1 chromatin 1 0.500231643177544 1 0.999536713644912 hm5C_site_44664 DeepMRMD:1;iRNA_m5C:0.999536713644912 44665 chr19 50339144 50339144 1 + G A UCEC 50339163 + 50339143 50339183 41 CGGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT CAGCCCCAGAACCCTGGGGCCAACCCTCAGCTGCGAAGCCT < 41bp 1 0.103941110145075 1 0.0541350841522217 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50339163 chr19:50339144 nonsynonymous SNV 0.998 3 2 hm5C_associated_SNPs_45927 0 0 1 0 1 chromatin 1 0.50023164329832 1 0.999536713403359 hm5C_site_44665 DeepMRMD:1;iRNA_m5C:0.999536713403359 44666 chr14 56233316 56233316 1 + C T UCEC 56233306 + 56233286 56233326 41 AAGCCTACAAGAAAGTTTGCCCTTCTGGGGCGACAGGCTCA AAGCCTACAAGAAAGTTTGCCCTTCTGGGGTGACAGGCTCA < 41bp 1 0.0239462515343121 1 0.0502032041549683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233306 chr14:56233316 . . 0 31 hm5C_associated_SNPs_45928 0 0 0 0 0 unknown 1 0.500231643923965 1 0.99953671215207 hm5C_site_44666 DeepMRMD:1;iRNA_m5C:0.99953671215207 44667 chr3 126708568 126708568 1 + C T UCEC 126708579 + 126708559 126708599 41 TCCTGCTACCGTGGTGAGGGCAAGCTCTCCCTGCCGTGGCT TCCTGCTACTGTGGTGAGGGCAAGCTCTCCCTGCCGTGGCT < 41bp 1 0.13353780358216 1 0.375635117292404 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126708579 chr3:126708568 nonsynonymous SNV 0.824 4 10 hm5C_associated_SNPs_45929 0 0 1 0 1 Ribosome 1 0.500231643918813 1 0.999536712162375 hm5C_site_44667 DeepMRMD:1;iRNA_m5C:0.999536712162375 44668 chr11 379647 379647 1 + C T UCEC 379631 + 379611 379651 41 GCCTCCGTGCGCCCCGACGGCCGCCCCGAGCTCTGCCGGCC GCCTCCGTGCGCCCCGACGGCCGCCCCGAGCTCTGCTGGCC < 41bp 1 0.129889446158183 1 0.183403372764587 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:379631 chr11:379647 nonsynonymous SNV 0.825 1 37 hm5C_associated_SNPs_45931 0 0 1 0 1 chromatin 1 0.500231643942442 1 0.999536712115115 hm5C_site_44668 DeepMRMD:1;iRNA_m5C:0.999536712115115 44669 chr17 7752796 7752796 1 + C T UCEC 7752799 + 7752779 7752819 41 CTTCTGCCCAGCCCACACCCCCGTCAGCCTCTGTCCCTGGA CTTCTGCCCAGCCCACATCCCCGTCAGCCTCTGTCCCTGGA < 41bp 1 0.0506411864796457 1 0.0782074332237244 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7752799 chr17:7752796 nonsynonymous SNV 0.384 1 18 hm5C_associated_SNPs_45932 0 0 1 0 0 Cytosol 1 0.500231643920596 1 0.999536712158807 hm5C_site_44669 DeepMRMD:1;iRNA_m5C:0.999536712158807 44670 chr17 7752796 7752796 1 + C T UCEC 7752800 + 7752780 7752820 41 TTCTGCCCAGCCCACACCCCCGTCAGCCTCTGTCCCTGGAA TTCTGCCCAGCCCACATCCCCGTCAGCCTCTGTCCCTGGAA < 41bp 1 0.322544284295987 1 0.176813989877701 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDM6B ENSG00000132510 CDS Human protein_coding chr17:7752800 chr17:7752796 nonsynonymous SNV 0.384 1 17 hm5C_associated_SNPs_45933 0 0 1 0 0 Cytosol 1 0.500231643920639 1 0.999536712158722 hm5C_site_44670 DeepMRMD:1;iRNA_m5C:0.999536712158722 44671 chr1 45973922 45973922 1 + C T UCEC 45973929 + 45973909 45973949 41 TCATTGCTGACTACGAGGTGCACCCCAACCGACGCCCCAAG TCATTGCTGACTATGAGGTGCACCCCAACCGACGCCCCAAG < 41bp 1 0.220836052481315 1 0.0534875094890594 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MMACHC ENSG00000132763 CDS Human protein_coding chr1:45973929 chr1:45973922 synonymous SNV . 0 14 hm5C_associated_SNPs_45934 0 0 0 0 1 Cytosol 1 0.500231644607836 1 0.999536710784328 hm5C_site_44671 DeepMRMD:1;iRNA_m5C:0.999536710784328 44672 chr3 123348385 123348385 1 + C T UCEC 123348379 + 123348359 123348399 41 GGCATCGTCGGAGATCTCATCGAATGCCTCGTCGTCGAAGT GGCATCGTCGGAGATCTCATCGAATGTCTCGTCGTCGAAGT < 41bp 1 0.635115157778603 1 0.302568584680557 experiment 0.729769684442794 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MYLK ENSG00000065534 CDS Human protein_coding chr3:123348379 chr3:123348385 nonsynonymous SNV 0.945 3 27 hm5C_associated_SNPs_45935 0 0 0 0 1 Cytosol 1 0.500253828921253 1 0.999492342157495 hm5C_site_44672 DeepMRMD:1;iRNA_m5C:0.999492342157495 44673 chr7 32598994 32598994 1 + C T UCEC 32598978 + 32598958 32598998 41 AGAGTCTTCCAATTACTGTACAACCTCAAGCTAATACGGGA AGAGTCTTCCAATTACTGTACAACCTCAAGCTAATATGGGA < 41bp 1 0.130765232705118 1 0.069542795419693 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AVL9 ENSG00000105778 CDS Human protein_coding chr7:32598978 chr7:32598994 nonsynonymous SNV 0.280 1 37 hm5C_associated_SNPs_45936 0 0 1 0 1 Ribosome 1 0.500231643920964 1 0.999536712158072 hm5C_site_44673 DeepMRMD:1;iRNA_m5C:0.999536712158072 44674 chr11 44129780 44129780 1 + C T UCEC 44129787 + 44129767 44129807 41 GAGACAGCACAAGCGATGGCCCAGCTCTCTAGGTATCTCAC GAGACAGCACAAGTGATGGCCCAGCTCTCTAGGTATCTCAC < 41bp 1 0.0756532147186773 1 0.0932349562644958 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129787 chr11:44129780 nonsynonymous SNV 0.050 2 14 hm5C_associated_SNPs_45937 0 0 1 0 1 Endoplasmic reticulum 1 0.500231812838288 1 0.999536374323425 hm5C_site_44674 DeepMRMD:1;iRNA_m5C:0.999536374323425 44675 chr6 42996964 42996964 1 + T G UCEC 42996946 + 42996926 42996966 41 CAGGCAAGGACAGGAGACATCTCCCTTTGAGCAAAGAGTAA CAGGCAAGGACAGGAGACATCTCCCTTTGAGCAAAGAGGAA < 41bp 1 0.422938294186842 1 0.745121896266937 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RRP36 ENSG00000124541 CDS Human protein_coding chr6:42996946 chr6:42996964 stoploss 0.876 0 39 hm5C_associated_SNPs_45938 0 0 1 0 0 Ribosome 1 0.500231643922983 0.509756207466126 0.999536712154034 hm5C_site_44675 DeepMRMD:0.509756207466126;iRNA_m5C:0.999536712154034 44676 chr17 71231909 71231909 1 + A G UCEC 71231897 + 71231877 71231917 41 CCAGAACAGACAGTGAAGACCTTTCCACTGCCAGCTGTTGG CCAGAACAGACAGTGAAGACCTTTCCACTGCCGGCTGTTGG < 41bp 1 0.0482005344686285 1 0.058421790599823 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71231897 chr17:71231909 synonymous SNV . 0 33 hm5C_associated_SNPs_45939 0 0 1 0 0 chromatin 1 0.500231616188267 1 0.999536767623466 hm5C_site_44676 DeepMRMD:1;iRNA_m5C:0.999536767623466 44677 chr7 150765106 150765106 1 + G A UCEC 150765104 + 150765084 150765124 41 CACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCG CACGTGGCCTCCCTCTCCTTCCACAGTCTCCTGGAGCTCCG < 41bp 1 0.439506871911639 1 0.315832167863846 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765104 chr7:150765106 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_45940 0 0 1 0 1 Ribosome 1 0.500231643879873 1 0.999536712240254 hm5C_site_44677 DeepMRMD:1;iRNA_m5C:0.999536712240254 44678 chr7 150765106 150765106 1 + G A UCEC 150765105 + 150765085 150765125 41 ACGTGGCCTCCCTCTCCTTCCGCAGTCTCCTGGAGCTCCGC ACGTGGCCTCCCTCTCCTTCCACAGTCTCCTGGAGCTCCGC < 41bp 1 0.484552156538929 1 0.368933916091919 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150765105 chr7:150765106 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_45941 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_44678 DeepMRMD:1;iRNA_m5C:0.999536712157814 44679 chr6 31605033 31605033 1 + C T UCEC 31605013 + 31604993 31605033 41 ACGCCCTTCTTCCCTTAGGTCCTTCTCTGGCCTCAATTCCC ACGCCCTTCTTCCCTTAGGTCCTTCTCTGGCCTCAATTCCT < 41bp 1 0.0767515168523938 1 0.0389368832111359 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31605013 chr6:31605033 nonsynonymous SNV 0.994 1 41 hm5C_associated_SNPs_45943 0 0 1 0 2 Ribosome 1 0.500231643923575 1 0.99953671215285 hm5C_site_44679 DeepMRMD:1;iRNA_m5C:0.99953671215285 44680 chr19 46196137 46196137 1 + C T UCEC 46196120 + 46196100 46196140 41 GCGTTCTACACCATTTGGAGCGGCTGGCACCGCAGGACTGA GCGTTCTACACCATTTGGAGCGGCTGGCACCGCAGGATTGA < 41bp 1 0.460697942262199 1 0.226381301879883 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QPCTL ENSG00000011478 CDS Human protein_coding chr19:46196120 chr19:46196137 nonsynonymous SNV 0.839 0 38 hm5C_associated_SNPs_45944 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_44680 DeepMRMD:1;iRNA_m5C:0.999536712157815 44681 chr5 43649326 43649326 1 + G A UCEC 43649344 + 43649324 43649364 41 TGGCTGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACC TGACTGGCATTGTGGGGTATCATACCGTCTGGGGAGTGACC < 41bp 1 0.0839637324601637 1 0.0337048470973969 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control NNT ENSG00000112992 CDS Human protein_coding chr5:43649344 chr5:43649326 nonsynonymous SNV 0.996 3 3 hm5C_associated_SNPs_45945 0 0 1 0 2 Endoplasmic reticulum 1 0.500232584970729 1 0.999534830058542 hm5C_site_44681 DeepMRMD:1;iRNA_m5C:0.999534830058542 44682 chr11 61719351 61719351 1 + C T UCEC 61719365 + 61719345 61719385 41 TGCTGGCGGGGCAGCATCTACAAGCTGCTATATGGCGAGTT TGCTGGTGGGGCAGCATCTACAAGCTGCTATATGGCGAGTT < 41bp 1 0.528103827787781 1 0.511276662349701 experiment 0.943792344424438 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control BEST1 ENSG00000167995 CDS Human protein_coding chr11:61719365 chr11:61719351 nonsynonymous SNV 0.992 4 7 hm5C_associated_SNPs_45946 1 0 0 0 1 chromatin 1 0.500231643921073 0.977446675300598 0.999536712157855 hm5C_site_44682 DeepMRMD:0.977446675300598;iRNA_m5C:0.999536712157855 not provided not provided 44683 chr12 56504368 56504368 1 + C T UCEC 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGAGAACCATTATTTACAAACGAGACCCCTCTAAACA < 41bp 1 0.309586910758293 1 0.447910130023956 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504368 nonsynonymous SNV 0.999 4 14 hm5C_associated_SNPs_45947 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44683 DeepMRMD:1;iRNA_m5C:0.999536712157815 44684 chr1 171763645 171763645 1 + T C UCEC 171763629 + 171763609 171763649 41 CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTTAAAA CCCAGCATTTGTGGAGCAATCTTTTCTACAGAAGGTCAAAA < 41bp 1 0.176102036334831 1 0.0640592277050018 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763629 chr1:171763645 synonymous SNV . 0 37 hm5C_associated_SNPs_45948 0 0 1 0 1 Ribosome 1 0.500231643920922 1 0.999536712158156 hm5C_site_44684 DeepMRMD:1;iRNA_m5C:0.999536712158156 44685 chr12 57599004 57599004 1 + C T UCEC 57599013 + 57598993 57599033 41 GACTGCGGGGACGGCTCTGACGAGGAGGACTGCAGCATCGG GACTGCGGGGATGGCTCTGACGAGGAGGACTGCAGCATCGG < 41bp 1 0.461116240826061 1 0.930318117141724 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control LRP1 ENSG00000123384 CDS Human protein_coding chr12:57599013 chr12:57599004 synonymous SNV . 0 12 hm5C_associated_SNPs_45949 0 0 0 0 1 Exosome 1 0.500231586037796 0.139363765716552 0.999536827924407 hm5C_site_44685 DeepMRMD:0.139363765716552;iRNA_m5C:0.999536827924407 44686 chr19 6177345 6177345 1 + G T UCEC 6177336 + 6177316 6177356 41 CACTCAGCCATATTGCAGCACAGATGATGGACATCTGGGTA CACTCAGCCATATTGCAGCACAGATGATGTACATCTGGGTA < 41bp 1 0.372579063672195 1 0.0778681933879852 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6177336 chr19:6177345 nonsynonymous SNV 0.727 2 30 hm5C_associated_SNPs_45950 0 0 0 0 1 exosome 1 0.500231651106289 1 0.999536697787422 hm5C_site_44686 DeepMRMD:1;iRNA_m5C:0.999536697787422 44687 chr19 30313229 30313229 1 + C T UCEC 30313222 + 30313202 30313242 41 TTGCTGCTTCGGCCTTGTATCATTTCTCGTCATCTGAATTG TTGCTGCTTCGGCCTTGTATCATTTCTTGTCATCTGAATTG < 41bp 1 0.0796183153197336 1 0.156813830137253 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313222 chr19:30313229 nonsynonymous SNV 0.947 3 28 hm5C_associated_SNPs_45951 0 0 0 0 2 Ribosome 1 0.500231643921655 1 0.999536712156689 hm5C_site_44687 DeepMRMD:1;iRNA_m5C:0.999536712156689 44688 chr1 86048097 86048097 1 + A G UCEC 86048095 + 86048075 86048115 41 GTCTTCCCTCTTATATGTCTCTAGTTTTTGGAATGGAGCCT GTCTTCCCTCTTATATGTCTCTGGTTTTTGGAATGGAGCCT < 41bp 1 0.356622333031079 1 0.392822235822678 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CYR61 ENSG00000142871 splicing Human protein_coding chr1:86048095 chr1:86048097 . 0.755 0 23 hm5C_associated_SNPs_45952 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643919109 1 0.999536712161782 hm5C_site_44688 DeepMRMD:1;iRNA_m5C:0.999536712161782 44689 chr1 203787702 203787702 1 + A G UCEC 203787706 + 203787686 203787726 41 ATTTGTTTACAGGGTGACAGCTGCCCATTCCGTCACTGTGA ATTTGTTTACAGGGTGGCAGCTGCCCATTCCGTCACTGTGA < 41bp 1 0.383872488909564 1 0.116609692573547 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203787706 chr1:203787702 nonsynonymous SNV 0.999 4 17 hm5C_associated_SNPs_45953 0 0 1 0 0 Nucleus 1 0.500231643977518 1 0.999536712044964 hm5C_site_44689 DeepMRMD:1;iRNA_m5C:0.999536712044964 44690 chr1 203787702 203787702 1 + A G UCEC 203787710 + 203787690 203787730 41 GTTTACAGGGTGACAGCTGCCCATTCCGTCACTGTGAAGCT GTTTACAGGGTGGCAGCTGCCCATTCCGTCACTGTGAAGCT < 41bp 1 0.107476918896952 1 0.099665105342865 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203787710 chr1:203787702 nonsynonymous SNV 0.999 4 13 hm5C_associated_SNPs_45954 0 0 1 0 0 Nucleus 1 0.500231645939294 1 0.999536708121412 hm5C_site_44690 DeepMRMD:1;iRNA_m5C:0.999536708121412 44691 chr1 203787702 203787702 1 + A G UCEC 203787711 + 203787691 203787731 41 TTTACAGGGTGACAGCTGCCCATTCCGTCACTGTGAAGCTG TTTACAGGGTGGCAGCTGCCCATTCCGTCACTGTGAAGCTG < 41bp 1 0.0699243705724445 1 0.0820406377315521 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203787711 chr1:203787702 nonsynonymous SNV 0.999 4 12 hm5C_associated_SNPs_45955 0 0 1 0 0 Nucleus 1 0.500231598410336 1 0.999536803179328 hm5C_site_44691 DeepMRMD:1;iRNA_m5C:0.999536803179328 44692 chr7 77539623 77539623 1 + G T UCEC 77539642 + 77539622 77539662 41 AGATAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAA ATATAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAA < 41bp 1 0.240472960156849 1 0.228506565093994 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PHTF2 ENSG00000006576 CDS Human protein_coding chr7:77539642 chr7:77539623 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_45957 0 0 1 0 1 Ribosome 1 0.500230905537354 1 0.999538188925291 hm5C_site_44692 DeepMRMD:1;iRNA_m5C:0.999538188925291 44693 chr3 62229564 62229564 1 + C A UCEC 62229569 + 62229549 62229589 41 GTATCCCTATTATTCCTATTCCGGGTAAGTAAGACACTGCT GTATCCCTATTATTCATATTCCGGGTAAGTAAGACACTGCT < 41bp 1 0.228017504417369 1 0.874078333377838 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PTPRG ENSG00000144724 CDS Human protein_coding chr3:62229569 chr3:62229564 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_45959 0 0 1 0 2 Ribosome 1 0.500231643921682 0.251843333244324 0.999536712156637 hm5C_site_44693 DeepMRMD:0.251843333244324;iRNA_m5C:0.999536712156637 44694 chr1 230384969 230384969 1 + C T UCEC 230384971 + 230384951 230384991 41 TCAAGTGGGATTACATGACGCCTGAGCAGAGAAGGTCCCGG TCAAGTGGGATTACATGATGCCTGAGCAGAGAAGGTCCCGG < 41bp 1 0.274878662647843 1 0.0750665366649628 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GALNT2 ENSG00000143641 CDS Human protein_coding chr1:230384971 chr1:230384969 nonsynonymous SNV 0.990 3 19 hm5C_associated_SNPs_45960 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921121 1 0.999536712157759 hm5C_site_44694 DeepMRMD:1;iRNA_m5C:0.999536712157759 44695 chr4 88967974 88967974 1 + A G UCEC 88967960 + 88967940 88967980 41 TGGAAGAGATATTGGAAATTCGCATTCACAAACTACACTAT TGGAAGAGATATTGGAAATTCGCATTCACAAACTGCACTAT < 41bp 1 0.353477375546737 1 0.499312996864319 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PKD2 ENSG00000118762 CDS Human protein_coding chr4:88967960 chr4:88967974 synonymous SNV . 0 35 hm5C_associated_SNPs_45961 0 0 1 0 1 Endoplasmic reticulum 1 0.500231635382039 1 0.999536729235923 hm5C_site_44695 DeepMRMD:1;iRNA_m5C:0.999536729235923 44696 chr3 16312547 16312547 1 + C T UCEC 16312562 + 16312542 16312582 41 TGACACTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA TGACATTCAGCACTTTGCGCCACCTTACTCTAACCAGGTGA < 41bp 1 0.239999763104094 1 0.143780559301376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312562 chr3:16312547 nonsynonymous SNV 0.000 0 6 hm5C_associated_SNPs_45962 0 0 0 19 2 Ribosome 1 0.500230831610057 1 0.999538336779886 hm5C_site_44696 DeepMRMD:1;iRNA_m5C:0.999538336779886 44697 chr1 145440779 145440779 1 + A G UCEC 145440782 + 145440762 145440802 41 ATCTGAACATCCCTGATACCCCAGAAGGTGAGCCAGACCTA ATCTGAACATCCCTGATGCCCCAGAAGGTGAGCCAGACCTA < 41bp 1 0.252815201493506 1 0.28320649266243 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TXNIP ENSG00000117289 CDS Human other chr1:145440782 chr1:145440779 nonsynonymous SNV . 0 18 hm5C_associated_SNPs_45963 0 0 1 0 1 Ribosome 1 0.500231643923876 1 0.999536712152247 hm5C_site_44697 DeepMRMD:1;iRNA_m5C:0.999536712152247 44698 chr1 145440779 145440779 1 + A G UCEC 145440783 + 145440763 145440803 41 TCTGAACATCCCTGATACCCCAGAAGGTGAGCCAGACCTAA TCTGAACATCCCTGATGCCCCAGAAGGTGAGCCAGACCTAA < 41bp 1 0.325967426316003 1 0.487674474716187 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TXNIP ENSG00000117289 CDS Human other chr1:145440783 chr1:145440779 nonsynonymous SNV . 0 17 hm5C_associated_SNPs_45964 0 0 1 0 1 Ribosome 1 0.500231643921163 1 0.999536712157675 hm5C_site_44698 DeepMRMD:1;iRNA_m5C:0.999536712157675 44699 chr16 22328487 22328487 1 + G A UCEC 22328499 + 22328479 22328519 41 CTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGAT CTGCGCACACTGCCCCTGGCCGATCAGATCAAGATCCTGAT < 41bp 1 0.143816299634723 1 0.0499754846096039 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22328499 chr16:22328487 synonymous SNV . 0 9 hm5C_associated_SNPs_45965 0 0 1 0 2 Ribosome 1 0.50023164534092 1 0.99953670931816 hm5C_site_44699 DeepMRMD:1;iRNA_m5C:0.99953670931816 44700 chr3 52245362 52245362 1 + G A UCEC 52245356 + 52245336 52245376 41 CACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTG CACGAGTTCTCTGATTGACACCGTACAGTCCTATGCTGCTG < 41bp 1 0.404875563181378 1 0.270872950553894 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245356 chr3:52245362 nonsynonymous SNV 0.024 5 27 hm5C_associated_SNPs_45966 0 0 1 0 1 Cytosol 1 0.500231643914803 1 0.999536712170394 hm5C_site_44700 DeepMRMD:1;iRNA_m5C:0.999536712170394 44701 chr3 52245362 52245362 1 + G A UCEC 52245357 + 52245337 52245377 41 ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGG ACGAGTTCTCTGATTGACACCGTACAGTCCTATGCTGCTGG < 41bp 1 0.119278945110914 1 0.252921044826508 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245357 chr3:52245362 nonsynonymous SNV 0.024 5 26 hm5C_associated_SNPs_45967 0 0 1 0 1 Cytosol 1 0.500188847513017 1 0.999622304973965 hm5C_site_44701 DeepMRMD:1;iRNA_m5C:0.999622304973965 44702 chr3 52245362 52245362 1 + G A UCEC 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTCTCTGATTGACACCGTACAGTCCTATGCTGCTGGCTTC < 41bp 1 0.267676289389027 1 0.203156560659409 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245362 nonsynonymous SNV 0.024 5 22 hm5C_associated_SNPs_45968 0 0 1 0 1 Cytosol 1 0.500231634196395 1 0.999536731607211 hm5C_site_44702 DeepMRMD:1;iRNA_m5C:0.999536731607211 44703 chr6 157527963 157527963 1 + C T UCEC 157527969 + 157527949 157527989 41 GCAAACCCTGGGCCCCAGACCGAAAGCAGTAAGTTTCCCTT GCAAACCCTGGGCCTCAGACCGAAAGCAGTAAGTTTCCCTT < 41bp 1 0.317323158348014 1 0.683894217014313 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARID1B ENSG00000049618 CDS Human protein_coding chr6:157527969 chr6:157527963 synonymous SNV . 0 15 hm5C_associated_SNPs_45969 0 0 0 0 0 Ribosome 1 0.500231643921092 0.632211565971374 0.999536712157815 hm5C_site_44703 DeepMRMD:0.632211565971374;iRNA_m5C:0.999536712157815 44704 chr22 41923391 41923391 1 + G A UCEC 41923388 + 41923368 41923408 41 AGCCTCGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGC AGCCTCGCCACCTTGGGGGCCGGACCATCATCACCAAGAGC < 41bp 1 0.110519523054057 1 0.298592925071716 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO2 ENSG00000100412 CDS Human protein_coding chr22:41923388 chr22:41923391 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_45970 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_44704 DeepMRMD:1;iRNA_m5C:0.999536712157815 44705 chr2 138762729 138762729 1 + G T UCEC 138762727 + 138762707 138762747 41 GTATTATGTAAAAGACATCCCAGCTACCCTGAAATTCTTCC GTATTATGTAAAAGACATCCCATCTACCCTGAAATTCTTCC < 41bp 1 0.0881755536447166 1 0.137805610895157 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HNMT ENSG00000150540 CDS Human protein_coding chr2:138762727 chr2:138762729 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_45971 0 0 1 0 2 Cytosol 1 0.500231643929542 1 0.999536712140916 hm5C_site_44705 DeepMRMD:1;iRNA_m5C:0.999536712140916 44706 chrX 73043713 73043713 1 + A G UCEC 73043732 - 73043712 73043752 41 GGGGCTCGGAACTACATGCCCTAGGATATAAAAATGATGTT GGGGCTCGGAACTACATGCCCTAGGATATAAAAATGATGCT < 41bp 1 0.327958789056756 1 0.458993315696716 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73043732 chrX:73043713 . . 0 40 hm5C_associated_SNPs_45972 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_44706 DeepMRMD:1;iRNA_m5C:0.999536712157815 44707 chr7 6634149 6634149 1 + G A UCEC 6634139 + 6634119 6634159 41 CTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAGCAGA CTGCTGTTTGGTGCCGGGATCCATTCAGACACTGAAGCAGA < 41bp 1 0.0479007506088255 1 0.406984120607376 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634139 chr7:6634149 synonymous SNV . 0 31 hm5C_associated_SNPs_45973 0 0 1 0 2 chromatin 1 0.500231138075598 1 0.999537723848804 hm5C_site_44707 DeepMRMD:1;iRNA_m5C:0.999537723848804 44708 chr16 72134478 72134478 1 + C T UCEC 72134463 + 72134443 72134483 41 GTGCACAATCTGGTGCCTCCCTTTCTGGATGGGCGCATTGT GTGCACAATCTGGTGCCTCCCTTTCTGGATGGGCGTATTGT < 41bp 1 0.0694530980275506 1 0.0340635776519775 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72134463 chr16:72134478 synonymous SNV . 0 36 hm5C_associated_SNPs_45975 0 0 1 0 0 Cytosol 1 0.500231489562694 1 0.999537020874612 hm5C_site_44708 DeepMRMD:1;iRNA_m5C:0.999537020874612 44709 chr8 59059225 59059225 1 + C T UCEC 59059206 + 59059186 59059226 41 TCGGGCTCGGGGCACAAGCACAGCTCCCGCAACTGGCCGCC TCGGGCTCGGGGCACAAGCACAGCTCCCGCAACTGGCCGTC < 41bp 1 0.647252877394589 1 0.373908877372742 experiment 0.705494245210822 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FAM110B ENSG00000169122 CDS Human protein_coding chr8:59059206 chr8:59059225 nonsynonymous SNV 0.070 1 40 hm5C_associated_SNPs_45976 0 0 0 0 0 Cytosol 1 0.500231643920232 1 0.999536712159535 hm5C_site_44709 DeepMRMD:1;iRNA_m5C:0.999536712159535 44710 chr7 141341096 141341096 1 + G T UCEC 141341103 + 141341083 141341123 41 CACGGGACCTACAGAGAGACCTCCCAATGAACCAGAGGAGA CACGGGACCTACATAGAGACCTCCCAATGAACCAGAGGAGA < 41bp 1 0.273693577765836 1 0.0585985779762268 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGK ENSG00000006530 CDS Human protein_coding chr7:141341103 chr7:141341096 stopgain 1.000 1 14 hm5C_associated_SNPs_45977 0 0 1 0 1 Cytosol 1 0.500231643039625 1 0.99953671392075 hm5C_site_44710 DeepMRMD:1;iRNA_m5C:0.99953671392075 44711 chr3 195398092 195398092 1 + C T UCEC 195398099 + 195398079 195398119 41 AAGGTTTATGGAGCGATACGCCCCCATCGCGAAGGACCTGG AAGGTTTATGGAGTGATACGCCCCCATCGCGAAGGACCTGG < 41bp 1 0.150528439694075 1 0.0354055166244507 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195398099 chr3:195398092 . . 0 14 hm5C_associated_SNPs_45979 0 0 0 1 2 unknown 1 0.500231582728944 1 0.999536834542112 hm5C_site_44711 DeepMRMD:1;iRNA_m5C:0.999536834542112 44712 chr6 130381237 130381237 1 + C T UCEC 130381222 + 130381202 130381242 41 AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGA AAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGTGTGGA < 41bp 1 0.434071503716678 1 0.273564338684082 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381222 chr6:130381237 synonymous SNV . 0 36 hm5C_associated_SNPs_45980 0 0 1 0 2 nucleoplasm 1 0.500231643921092 1 0.999536712157815 hm5C_site_44712 DeepMRMD:1;iRNA_m5C:0.999536712157815 44713 chr15 74325012 74325012 1 + G A UCEC 74325006 + 74324986 74325026 41 TACAGTCAGTGCCCGGGGCACACCCCGTGCCAGTGTACGCC TACAGTCAGTGCCCGGGGCACACCCCATGCCAGTGTACGCC < 41bp 1 0.316015971661785 1 0.0598049163818359 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PML ENSG00000140464 CDS Human protein_coding chr15:74325006 chr15:74325012 nonsynonymous SNV 0.007 0 27 hm5C_associated_SNPs_45981 0 0 0 0 3 Cytosol 1 0.500231643921174 1 0.999536712157651 hm5C_site_44713 DeepMRMD:1;iRNA_m5C:0.999536712157651 44714 chr1 166818962 166818962 1 + C T UCEC 166818969 + 166818949 166818989 41 TTGATAACCAGGGCGAAAAGCCTGTCTTGGTCAAGACACCA TTGATAACCAGGGTGAAAAGCCTGTCTTGGTCAAGACACCA < 41bp 1 0.0799329566781392 1 0.0435179173946381 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POGK ENSG00000143157 CDS Human protein_coding chr1:166818969 chr1:166818962 synonymous SNV . 0 14 hm5C_associated_SNPs_45982 0 0 1 0 0 Nucleus 1 0.500231643456489 1 0.999536713087022 hm5C_site_44714 DeepMRMD:1;iRNA_m5C:0.999536713087022 44715 chr12 52635387 52635387 1 + C T UCEC 52635378 + 52635358 52635398 41 GCGCAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGC GCGCAGTATGAGGAGATGGCCAAATGCAGTCGGGCTGAGGC < 41bp 1 0.322566420398884 1 0.68374490737915 experiment 1 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control KRT7 ENSG00000135480 CDS Human protein_coding chr12:52635378 chr12:52635387 synonymous SNV . 0 30 hm5C_associated_SNPs_45983 0 0 0 0 1 Cytosol 1 0.500232845386007 0.6325101852417 0.999534309227987 hm5C_site_44715 DeepMRMD:0.6325101852417;iRNA_m5C:0.999534309227987 44716 chr16 19580893 19580893 1 + G A UCEC 19580890 + 19580870 19580910 41 TGTTTGCAGCCACTGCTGACCCCGCAGCCTTGGCAGCTGCC TGTTTGCAGCCACTGCTGACCCCACAGCCTTGGCAGCTGCC < 41bp 1 0.122584040219979 1 0.312316954135895 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19580890 chr16:19580893 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_45985 0 0 0 0 1 Cytosol 1 0.500231642994069 1 0.999536714011862 hm5C_site_44716 DeepMRMD:1;iRNA_m5C:0.999536714011862 44717 chr19 10897280 10897280 1 + G A UCEC 10897279 + 10897259 10897299 41 GGGAGTCGCTGCCGGCCCTACGTAGCAAACTACAGAGCCAG GGGAGTCGCTGCCGGCCCTACATAGCAAACTACAGAGCCAG < 41bp 1 0.165719331063334 1 0.121634185314178 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNM2 ENSG00000079805 CDS Human protein_coding chr19:10897279 chr19:10897280 nonsynonymous SNV 0.556 4 22 hm5C_associated_SNPs_45986 2 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44717 DeepMRMD:1;iRNA_m5C:0.999536712157815 Charcot-Marie-Tooth, Intermediate Charcot-Marie-Tooth, Intermediate 44718 chr11 4142935 4142935 1 + A G UCEC 4142924 + 4142904 4142944 41 AGAACACAGGAAAGGAAGAGCAGCGTGCCAGAGATCTTTTC AGAACACAGGAAAGGAAGAGCAGCGTGCCAGGGATCTTTTC < 41bp 1 0.615572258756493 1 0.718154668807983 experiment 0.768855482487013 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RRM1 ENSG00000167325 CDS Human protein_coding chr11:4142924 chr11:4142935 synonymous SNV . 0 32 hm5C_associated_SNPs_45987 0 0 1 0 1 Nucleus 1 0.500231643921088 0.563690662384034 0.999536712157823 hm5C_site_44718 DeepMRMD:0.563690662384034;iRNA_m5C:0.999536712157823 44719 chr8 110569182 110569182 1 + G T UCEC 110569185 + 110569165 110569205 41 TTGTTATTAAGAAGAGAGAACCATTGAATTTTGGCATCCCA TTGTTATTAAGAAGAGATAACCATTGAATTTTGGCATCCCA < 41bp 1 0.0520228718304331 1 0.119010508060455 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110569185 chr8:110569182 stopgain 1.000 1 18 hm5C_associated_SNPs_45988 0 0 1 0 2 Ribosome 1 0.500231645888047 1 0.999536708223906 hm5C_site_44719 DeepMRMD:1;iRNA_m5C:0.999536708223906 44720 chr1 46070645 46070645 1 + G A UCEC 46070650 + 46070630 46070670 41 GCTAATGAGTGTGGAGAAGCCTTCTTTTTCTATGGGAAATC GCTAATGAGTGTGGAAAAGCCTTCTTTTTCTATGGGAAATC < 41bp 1 0.255824422289339 1 0.0554491579532623 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46070650 chr1:46070645 nonsynonymous SNV 1.000 5 16 hm5C_associated_SNPs_45989 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_44720 DeepMRMD:1;iRNA_m5C:0.999536712157815 44721 chrX 68059898 68059898 1 + C T UCEC 68059888 + 68059868 68059908 41 GTCAAGATGGCCACACAGGCCCCTGGTAGTCGGGGCTCCCT GTCAAGATGGCCACACAGGCCCCTGGTAGTTGGGGCTCCCT < 41bp 1 0.143160515046453 1 0.0925588011741638 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059888 chrX:68059898 nonsynonymous SNV 0.493 3 31 hm5C_associated_SNPs_45990 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_44721 DeepMRMD:1;iRNA_m5C:0.999536712157815 44722 chr2 182786925 182786925 1 + C A UCEC 182786940 + 182786920 182786960 41 GGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCTCTG GGTGGATCTAACGCCAACAGCTCCTTCTAGAACAGGCTCTG < 41bp 1 0.536340616281472 1 0.180770635604858 experiment 0.927318767437055 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182786940 chr2:182786925 nonsynonymous SNV 0.624 3 6 hm5C_associated_SNPs_45991 0 0 1 0 0 Ribosome 1 0.500231825393516 1 0.999536349212968 hm5C_site_44722 DeepMRMD:1;iRNA_m5C:0.999536349212968 44723 chr2 177015077 177015077 1 + G A UCEC 177015059 + 177015039 177015079 41 TGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTG TGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTATG < 41bp 1 0.285420030757393 1 0.0261346101760864 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015059 chr2:177015077 . . 0 39 hm5C_associated_SNPs_45992 0 0 1 0 0 unknown 1 0.500231643272265 1 0.99953671345547 hm5C_site_44723 DeepMRMD:1;iRNA_m5C:0.99953671345547 44724 chr2 177015077 177015077 1 + G A UCEC 177015060 + 177015040 177015080 41 GTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGT GTAACGTTGTCTATATATACCCTGTAGAACCGAATTTATGT < 41bp 1 0.143192722719245 1 0.0399515330791473 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015060 chr2:177015077 . . 0 38 hm5C_associated_SNPs_45993 0 0 1 0 0 unknown 1 0.500231643612626 1 0.999536712774748 hm5C_site_44724 DeepMRMD:1;iRNA_m5C:0.999536712774748 44725 chr2 177015077 177015077 1 + G A UCEC 177015069 + 177015049 177015089 41 TCTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCGT TCTATATATACCCTGTAGAACCGAATTTATGTGGTATCCGT < 41bp 1 0.615525983814997 1 0.062897652387619 experiment 0.768948032370005 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015069 chr2:177015077 . . 0 29 hm5C_associated_SNPs_45994 0 0 1 0 0 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_44725 DeepMRMD:1;iRNA_m5C:0.999536712157814 44726 chr2 177015077 177015077 1 + G A UCEC 177015070 + 177015050 177015090 41 CTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCGTA CTATATATACCCTGTAGAACCGAATTTATGTGGTATCCGTA < 41bp 1 0.399184549789918 1 0.150236964225769 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout MIR10B ENSG00000207744 ncRNA_exonic Human miRNA chr2:177015070 chr2:177015077 . . 0 28 hm5C_associated_SNPs_45995 0 0 1 0 0 unknown 1 0.500231626184674 1 0.999536747630653 hm5C_site_44726 DeepMRMD:1;iRNA_m5C:0.999536747630653 44727 chr2 73681187 73681187 1 + A G UCEC 73681178 + 73681158 73681198 41 AATGCAGAGGAAGAGGAAAGCCGGGTACGAGCACATGGTAA AATGCAGAGGAAGAGGAAAGCCGGGTACGGGCACATGGTAA < 41bp 1 0.292947485744216 1 0.829263925552368 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ALMS1 ENSG00000116127 CDS Human protein_coding chr2:73681178 chr2:73681187 synonymous SNV . 0 30 hm5C_associated_SNPs_45996 0 0 0 0 1 Nucleus 1 0.50023164392109 0.341472148895264 0.99953671215782 hm5C_site_44727 DeepMRMD:0.341472148895264;iRNA_m5C:0.99953671215782 44728 chr6 52943654 52943654 1 + C A UCEC 52943668 + 52943648 52943688 41 AGATTACTTATACCCGGTCTCCAGATGGTGATGGCGTTGGA AGATTAATTATACCCGGTCTCCAGATGGTGATGGCGTTGGA < 41bp 1 0.664918417081145 1 0.736110687255859 experiment 0.67016316583771 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943668 chr6:52943654 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_45997 0 0 1 0 2 Cytosol 1 0.50023190846697 0.527778625488282 0.999536183066061 hm5C_site_44728 DeepMRMD:0.527778625488282;iRNA_m5C:0.999536183066061 44729 chr14 37754606 37754606 1 + G T UCEC 37754619 + 37754599 37754639 41 GGAGAGAGATGAAGCAATTGCACGAGCCAAGCATATGGAAA GGAGAGATATGAAGCAATTGCACGAGCCAAGCATATGGAAA < 41bp 1 0.490059943714095 1 0.54093474149704 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MIPOL1 ENSG00000151338 CDS Human protein_coding chr14:37754619 chr14:37754606 nonsynonymous SNV 0.997 4 8 hm5C_associated_SNPs_46000 0 0 1 0 1 chromatin 1 0.500228403286139 0.91813051700592 0.999543193427722 hm5C_site_44729 DeepMRMD:0.91813051700592;iRNA_m5C:0.999543193427722 44730 chr11 63719959 63719959 1 + C T UCEC 63719969 + 63719949 63719989 41 TACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTT TACCTCATCGTGTGGGAAAACAGCTCCGTCCCTGTTGCCTT < 41bp 1 0.655708487885928 1 0.609795808792114 experiment 0.688583024228143 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719969 chr11:63719959 nonsynonymous SNV 0.978 3 11 hm5C_associated_SNPs_46001 0 0 1 0 2 Ribosome 1 0.500231643921092 0.780408382415772 0.999536712157815 hm5C_site_44730 DeepMRMD:0.780408382415772;iRNA_m5C:0.999536712157815 44731 chr16 5127933 5127933 1 + G A UCEC 5127916 + 5127896 5127936 41 ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCCGCAT ATTTCATTGCAGGGCTGTGACCGTCTACGACAAGCCCACAT < 41bp 1 0.165848258435223 1 0.20905864238739 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ALG1 ENSG00000033011 CDS Human protein_coding chr16:5127916 chr16:5127933 nonsynonymous SNV 0.662 2 38 hm5C_associated_SNPs_46002 0 0 1 0 2 Ribosome 1 0.499996740104184 1 1 hm5C_site_44731 DeepMRMD:1;iRNA_m5C:1 44732 chr7 76109984 76109984 1 + G A UCEC 76110000 + 76109980 76110020 41 CAACGTTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTT CAACATTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTT < 41bp 1 0.1778445936196 1 0.071511298418045 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110000 chr7:76109984 nonsynonymous SNV 0.743 0 5 hm5C_associated_SNPs_46003 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44732 DeepMRMD:1;iRNA_m5C:0.999536712157815 44733 chr7 76109984 76109984 1 + G A UCEC 76110001 + 76109981 76110021 41 AACGTTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTG AACATTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTG < 41bp 1 0.455164380648469 1 0.604759395122528 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110001 chr7:76109984 nonsynonymous SNV 0.743 0 4 hm5C_associated_SNPs_46004 0 0 0 0 0 Nucleus 1 0.500231643921103 0.790481209754944 0.999536712157793 hm5C_site_44733 DeepMRMD:0.790481209754944;iRNA_m5C:0.999536712157793 44734 chr19 58371009 58371009 1 + G A UCEC 58371027 + 58371007 58371047 41 GTGCAAGGAATGTGGGAAATCATTTAGGTACAGATCCCACC GTACAAGGAATGTGGGAAATCATTTAGGTACAGATCCCACC < 41bp 1 0.176699252996084 1 0.214186817407608 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF587 ENSG00000198466 CDS Human protein_coding chr19:58371027 chr19:58371009 nonsynonymous SNV 0.006 4 3 hm5C_associated_SNPs_46005 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44734 DeepMRMD:1;iRNA_m5C:0.999536712157815 44735 chr20 57484814 57484814 1 + G A UCEC 57484828 + 57484808 57484848 41 CCAACCGCCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC CCAACCACCTGCAGGAGGCTCTGAACCTCTTCAAGAGCATC < 41bp 1 0.398310773992574 1 0.155091255903244 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient GNAS ENSG00000087460 CDS Human protein_coding chr20:57484828 chr20:57484814 nonsynonymous SNV 1.000 5 7 hm5C_associated_SNPs_46006 0 0 1 0 2 Cytosol 1 0.500231687218543 1 0.999536625562914 hm5C_site_44735 DeepMRMD:1;iRNA_m5C:0.999536625562914 44736 chr15 40659663 40659663 1 + C T UCEC 40659654 + 40659634 40659674 41 CCCACCCCAAAGGGTGCTTCCCTCATGGACATCTACCTGGA CCCACCCCAAAGGGTGCTTCCCTCATGGATATCTACCTGGA < 41bp 1 0.189564449742627 1 0.253814399242401 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control DISP2 ENSG00000140323 CDS Human protein_coding chr15:40659654 chr15:40659663 synonymous SNV . 0 30 hm5C_associated_SNPs_46007 0 0 0 0 0 nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44736 DeepMRMD:1;iRNA_m5C:0.999536712157815 44737 chr17 4859438 4859438 1 + C T UCEC 4859423 + 4859403 4859443 41 CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAG CAACCAGATCGGCTCGGTGACCGAATCGATCCAGGTGTGAG < 41bp 1 0.473279365277952 1 0.13961735367775 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859423 chr17:4859438 nonsynonymous SNV 0.999 3 36 hm5C_associated_SNPs_46008 0 0 1 0 2 nucleus 1 0.500228963864227 1 0.999542072271546 hm5C_site_44737 DeepMRMD:1;iRNA_m5C:0.999542072271546 44738 chr17 4859438 4859438 1 + C T UCEC 4859424 + 4859404 4859444 41 AACCAGATCGGCTCGGTGACCGAATCGATCCAGGCGTGAGT AACCAGATCGGCTCGGTGACCGAATCGATCCAGGTGTGAGT < 41bp 1 0.374634489993058 1 0.475293844938278 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859424 chr17:4859438 nonsynonymous SNV 0.999 3 35 hm5C_associated_SNPs_46009 0 0 1 0 2 nucleus 1 0.500231625392274 1 0.999536749215451 hm5C_site_44738 DeepMRMD:1;iRNA_m5C:0.999536749215451 44739 chr11 118949983 118949983 1 + G A UCEC 118949993 + 118949973 118950013 41 ACCCGTATCCGCCAGGAGATCCAAGAGCTCAAGGCCAGGTA ACCCGTATCCACCAGGAGATCCAAGAGCTCAAGGCCAGGTA < 41bp 1 0.434614555010458 1 0.221472471952438 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control VPS11 ENSG00000160695 CDS Human protein_coding chr11:118949993 chr11:118949983 nonsynonymous SNV 1.000 2 11 hm5C_associated_SNPs_46010 0 0 0 0 1 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44739 DeepMRMD:1;iRNA_m5C:0.999536712157815 44740 chr19 39948351 39948351 1 + A G UCEC 39948343 + 39948323 39948363 41 GATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGA GATGAGTATGAGGACGAGGACCAGTGGGGGGATGGAGCAGA < 41bp 1 0.295151420310367 1 0.153096437454224 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948343 chr19:39948351 nonsynonymous SNV 0.997 2 29 hm5C_associated_SNPs_46011 0 0 1 0 2 Nucleus 1 0.500231643921111 1 0.999536712157778 hm5C_site_44740 DeepMRMD:1;iRNA_m5C:0.999536712157778 44741 chr19 39948351 39948351 1 + A G UCEC 39948344 + 39948324 39948364 41 ATGAGTATGAGGACGAGGACCAGTGGGAGGATGGAGCAGAG ATGAGTATGAGGACGAGGACCAGTGGGGGGATGGAGCAGAG < 41bp 1 0.549384221602726 1 0.219991713762283 experiment 0.901231556794547 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948344 chr19:39948351 nonsynonymous SNV 0.997 2 28 hm5C_associated_SNPs_46012 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_44741 DeepMRMD:1;iRNA_m5C:0.999536712157814 44742 chr19 39948351 39948351 1 + A G UCEC 39948360 + 39948340 39948380 41 GGACCAGTGGGAGGATGGAGCAGAGGACATTCTAGAGAAAG GGACCAGTGGGGGGATGGAGCAGAGGACATTCTAGAGAAAG < 41bp 1 0.649545530591356 1 0.844734191894531 experiment 0.700908938817287 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948360 chr19:39948351 nonsynonymous SNV 0.997 2 12 hm5C_associated_SNPs_46013 0 0 1 0 2 Nucleus 1 0.500231643921092 0.310531616210938 0.999536712157815 hm5C_site_44742 DeepMRMD:0.310531616210938;iRNA_m5C:0.999536712157815 44743 chr19 39948351 39948351 1 + A G UCEC 39948367 + 39948347 39948387 41 TGGGAGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTG TGGGGGGATGGAGCAGAGGACATTCTAGAGAAAGGTGTGTG < 41bp 1 0.0535783829350573 1 0.0631246566772461 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948367 chr19:39948351 nonsynonymous SNV 0.997 2 5 hm5C_associated_SNPs_46014 0 0 1 0 2 Nucleus 1 0.50021796076042 1 0.999564078479161 hm5C_site_44743 DeepMRMD:1;iRNA_m5C:0.999564078479161 44744 chrX 70776892 70776892 1 + G A UCEC 70776893 + 70776873 70776913 41 GAGCCTTGCAGTGTTATACGCGTGCCATCCAAATTAATCCT GAGCCTTGCAGTGTTATACACGTGCCATCCAAATTAATCCT < 41bp 1 0.237602396912635 1 0.0417568385601044 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control OGT ENSG00000147162 CDS Human protein_coding chrX:70776893 chrX:70776892 synonymous SNV . 0 20 hm5C_associated_SNPs_46015 0 0 1 0 2 Nucleus 1 0.500211479707491 1 0.999577040585018 hm5C_site_44744 DeepMRMD:1;iRNA_m5C:0.999577040585018 44745 chr7 139107034 139107034 1 + G A UCEC 139107016 + 139106996 139107036 41 TCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCA TCGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGACA < 41bp 1 0.0797522189479944 1 0.085328221321106 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107016 chr7:139107034 nonsynonymous SNV 1.000 3 39 hm5C_associated_SNPs_46016 0 0 1 0 0 unknown 1 0.50023165163779 1 0.999536696724419 hm5C_site_44745 DeepMRMD:1;iRNA_m5C:0.999536696724419 44746 chr7 139107034 139107034 1 + G A UCEC 139107017 + 139106997 139107037 41 CGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAG CGGAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGACAG < 41bp 1 0.176993993630671 1 0.0683114528656006 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107017 chr7:139107034 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_46017 0 0 1 0 0 unknown 1 0.500231647702805 1 0.999536704594389 hm5C_site_44746 DeepMRMD:1;iRNA_m5C:0.999536704594389 44747 chr7 139107034 139107034 1 + G A UCEC 139107028 + 139107008 139107048 41 GAAGCGGTCCTATGAGAGTGCTAATGGCAGATCAGAAGACA GAAGCGGTCCTATGAGAGTGCTAATGACAGATCAGAAGACA < 41bp 1 0.321729576134599 1 0.125724822282791 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107028 chr7:139107034 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_46018 0 0 1 0 0 unknown 1 0.500231643562506 1 0.999536712874989 hm5C_site_44747 DeepMRMD:1;iRNA_m5C:0.999536712874989 44748 chr7 139107034 139107034 1 + G A UCEC 139107035 + 139107015 139107055 41 TCCTATGAGAGTGCTAATGGCAGATCAGAAGACAGGAGGAG TCCTATGAGAGTGCTAATGACAGATCAGAAGACAGGAGGAG < 41bp 1 0.570174784320111 1 0.408235043287277 experiment 0.859650431359778 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139107035 chr7:139107034 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_46019 0 0 1 0 0 unknown 1 0.500231643841738 1 0.999536712316524 hm5C_site_44748 DeepMRMD:1;iRNA_m5C:0.999536712316524 44749 chr4 3101058 3101058 1 + C T UCEC 3101067 + 3101047 3101087 41 TTTCTGCTGTGCAGTGATGACGCAGAGTCAGATGTCAGGAT TTTCTGCTGTGTAGTGATGACGCAGAGTCAGATGTCAGGAT < 41bp 1 0.335603798395304 1 0.409471124410629 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HTT ENSG00000197386 CDS Human protein_coding chr4:3101067 chr4:3101058 synonymous SNV . 0 12 hm5C_associated_SNPs_46020 0 0 1 0 2 Cytosol 1 0.500249011000281 1 0.999501977999439 hm5C_site_44749 DeepMRMD:1;iRNA_m5C:0.999501977999439 44750 chr11 45891359 45891359 1 + C T UCEC 45891339 + 45891319 45891359 41 GCTTCCTGACCCGCGGGGACCTCTGGGTCAGCTGGGAGAGC GCTTCCTGACCCGCGGGGACCTCTGGGTCAGCTGGGAGAGT < 41bp 1 0.509901769582751 1 0.236298650503159 experiment 0.980196460834499 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CRY2 ENSG00000121671 CDS Human protein_coding chr11:45891339 chr11:45891359 synonymous SNV . 0 41 hm5C_associated_SNPs_46021 0 0 1 0 1 Nucleus 1 0.5002316494364 1 0.999536701127199 hm5C_site_44750 DeepMRMD:1;iRNA_m5C:0.999536701127199 44751 chr19 49714016 49714016 1 + G A UCEC 49713999 + 49713979 49714019 41 CTAAGGAAGCCGAGCGGAAGCTGCTAACGTGGGAATCGGTG CTAAGGAAGCCGAGCGGAAGCTGCTAACGTGGGAATCAGTG < 41bp 1 0.426671479865265 1 0.331181794404984 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49713999 chr19:49714016 synonymous SNV . 0 38 hm5C_associated_SNPs_46022 0 0 0 0 2 chromatin 1 0.500231640970917 1 0.999536718058165 hm5C_site_44751 DeepMRMD:1;iRNA_m5C:0.999536718058165 44752 chr19 57795980 57795980 1 + A G UCEC 57795986 + 57795966 57796006 41 GTGGGGGCAGTTGGACGTGACCCAGAGGGCCTTGTACGTGG GTGGGGGCAGTTGGGCGTGACCCAGAGGGCCTTGTACGTGG < 41bp 1 0.694596978676346 1 0.158413887023926 experiment 0.610806042647308 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57795986 chr19:57795980 nonsynonymous SNV 0.934 1 15 hm5C_associated_SNPs_46023 0 0 1 0 2 Nucleus 1 0.500231643921067 1 0.999536712157865 hm5C_site_44752 DeepMRMD:1;iRNA_m5C:0.999536712157865 44753 chr12 56504379 56504379 1 + C T UCEC 56504375 + 56504355 56504395 41 GGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACA GGACAGAGAACCACTATTTACAAATGAGACCCCTCTAAACA < 41bp 1 0.407348710856317 1 0.397525817155838 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504375 chr12:56504379 stopgain 1.000 1 25 hm5C_associated_SNPs_46024 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44753 DeepMRMD:1;iRNA_m5C:0.999536712157815 44754 chr5 169127070 169127070 1 + G T UCEC 169127059 + 169127039 169127079 41 TGCTGGTGGGTGACATCATTCAGATTCGCAAGGACTATCCA TGCTGGTGGGTGACATCATTCAGATTCGCAATGACTATCCA < 41bp 1 0.479551382625441 1 0.718341410160065 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169127059 chr5:169127070 nonsynonymous SNV 1.000 4 32 hm5C_associated_SNPs_46025 0 0 1 0 2 Cytosol 1 0.500219379709606 0.56331717967987 0.999561240580788 hm5C_site_44754 DeepMRMD:0.56331717967987;iRNA_m5C:0.999561240580788 44755 chr2 54872430 54872430 1 + C T UCEC 54872413 + 54872393 54872433 41 AAGAAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCT AAGAAGGAGATCGAAGAGCTCCAAAGCCAAGCCCAGGTCCT < 41bp 1 0.268921151802453 1 0.120482206344604 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872413 chr2:54872430 nonsynonymous SNV 0.999 1 38 hm5C_associated_SNPs_46026 0 0 1 0 1 Nucleus 1 0.500231643917754 1 0.999536712164492 hm5C_site_44755 DeepMRMD:1;iRNA_m5C:0.999536712164492 44756 chr2 54872430 54872430 1 + C T UCEC 54872420 + 54872400 54872440 41 AGATCGAAGAGCTCCAAAGCCAAGCCCAGGCCCTGAGTCAG AGATCGAAGAGCTCCAAAGCCAAGCCCAGGTCCTGAGTCAG < 41bp 1 0.260544678723597 1 0.512397289276123 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872420 chr2:54872430 nonsynonymous SNV 0.999 1 31 hm5C_associated_SNPs_46027 0 0 1 0 1 Nucleus 1 0.500231643918596 0.975205421447754 0.999536712162808 hm5C_site_44756 DeepMRMD:0.975205421447754;iRNA_m5C:0.999536712162808 44757 chr2 54872430 54872430 1 + C T UCEC 54872425 + 54872405 54872445 41 GAAGAGCTCCAAAGCCAAGCCCAGGCCCTGAGTCAGGAAGG GAAGAGCTCCAAAGCCAAGCCCAGGTCCTGAGTCAGGAAGG < 41bp 1 0.242717281827549 1 0.466951072216034 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54872425 chr2:54872430 nonsynonymous SNV 0.999 1 26 hm5C_associated_SNPs_46028 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44757 DeepMRMD:1;iRNA_m5C:0.999536712157815 44758 chr12 22199361 22199361 1 + C T UCEC 22199363 + 22199343 22199383 41 GGCCGAGGTGTGGAGAAGCCCCCGCACCTGGCAGCCCTAAT GGCCGAGGTGTGGAGAAGTCCCCGCACCTGGCAGCCCTAAT < 41bp 1 0.68977431936673 1 0.260803401470184 experiment 0.62045136126654 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CMAS ENSG00000111726 CDS Human protein_coding chr12:22199363 chr12:22199361 nonsynonymous SNV 0.997 0 19 hm5C_associated_SNPs_46029 0 0 1 0 0 Ribosome 1 0.500231643910315 1 0.999536712179369 hm5C_site_44758 DeepMRMD:1;iRNA_m5C:0.999536712179369 44759 chr1 10195147 10195147 1 + G A UCEC 10195142 + 10195122 10195162 41 TCAAGTTAGAAACAGTTGATCCCACGTATATTTTTCACCCA TCAAGTTAGAAACAGTTGATCCCACATATATTTTTCACCCA < 41bp 1 0.0800880073827933 1 0.208191961050034 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBE4B ENSG00000130939 CDS Human protein_coding chr1:10195142 chr1:10195147 synonymous SNV . 0 26 hm5C_associated_SNPs_46031 0 0 1 0 1 Cytosol 1 0.500231644729389 1 0.999536710541222 hm5C_site_44759 DeepMRMD:1;iRNA_m5C:0.999536710541222 44760 chr11 82921423 82921423 1 + C T UCEC 82921433 + 82921413 82921453 41 AACTCATGGACATTCTTTCACTTTACAAATAATGCTCCGAA AACTCATGGATATTCTTTCACTTTACAAATAATGCTCCGAA < 41bp 1 0.336478962281585 1 0.0493552684783936 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82921433 chr11:82921423 nonsynonymous SNV 1.000 4 11 hm5C_associated_SNPs_46032 0 0 1 0 3 nucleus 1 0.500231643964329 1 0.999536712071343 hm5C_site_44760 DeepMRMD:1;iRNA_m5C:0.999536712071343 44761 chr11 63997325 63997325 1 + G A UCEC 63997328 + 63997308 63997348 41 TTGTCTCCCCACAGAACGTGCAGAGATTGCTCGAGACGGAG TTGTCTCCCCACAGAACATGCAGAGATTGCTCGAGACGGAG < 41bp 1 0.451465779882846 1 0.126733511686325 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997328 chr11:63997325 nonsynonymous SNV 0.002 0 18 hm5C_associated_SNPs_46034 0 0 0 0 1 Ribosome 1 0.500231639354798 1 0.999536721290403 hm5C_site_44761 DeepMRMD:1;iRNA_m5C:0.999536721290403 44762 chr16 83251068 83251068 1 + G A UCEC 83251057 + 83251037 83251077 41 AATGAGAACACAGGGAGCGTCTCCGTGACACGGACCTTGGA AATGAGAACACAGGGAGCGTCTCCGTGACACAGACCTTGGA < 41bp 1 0.437555051748456 1 0.937914490699768 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:83251057 chr16:83251068 nonsynonymous SNV 0.983 0 32 hm5C_associated_SNPs_46035 0 0 0 0 1 Nucleus 1 0.500233551100823 0.124171018600464 0.999532897798354 hm5C_site_44762 DeepMRMD:0.124171018600464;iRNA_m5C:0.999532897798354 44763 chr15 42052707 42052707 1 + A G UCEC 42052715 + 42052695 42052735 41 TCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGT TCCAAGGTTTCCGAAAGTCTCATTCTTACTCGAGTAAGTGT < 41bp 1 0.0295282159809595 1 0.0652387142181396 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42052715 chr15:42052707 nonsynonymous SNV 1.000 5 13 hm5C_associated_SNPs_46036 0 0 1 0 1 Cytosol 1 0.500231643921134 1 0.999536712157731 hm5C_site_44763 DeepMRMD:1;iRNA_m5C:0.999536712157731 44764 chr11 61404915 61404915 1 + C T UCEC 61404895 + 61404875 61404915 41 ATCGACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGAC ATCGACGGGTACAAACGAGTCCTGGCCTTGTCTGTGGAGAT < 41bp 1 0.215417513059598 1 0.104501754045486 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404895 chr11:61404915 . . 0 41 hm5C_associated_SNPs_46037 0 0 1 0 0 unknown 1 0.500231642937742 1 0.999536714124516 hm5C_site_44764 DeepMRMD:1;iRNA_m5C:0.999536714124516 44765 chr11 47306108 47306108 1 + G A UCEC 47306101 + 47306081 47306121 41 AGCAGCCCCAGCACTGTCATCCACGGAGCCAACTCTGTAAG AGCAGCCCCAGCACTGTCATCCACGGAACCAACTCTGTAAG < 41bp 1 0.291530529415875 1 0.165913701057434 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MADD ENSG00000110514 CDS Human protein_coding chr11:47306101 chr11:47306108 nonsynonymous SNV 0.377 0 28 hm5C_associated_SNPs_46038 0 0 1 0 1 Nucleus 1 0.500220892689145 1 0.99955821462171 hm5C_site_44765 DeepMRMD:1;iRNA_m5C:0.99955821462171 44766 chr11 68822733 68822733 1 + C T UCEC 68822727 + 68822707 68822747 41 ACCAGCACGGCGGACGTGCGCTACCGCGCTGCTCCCTGGGA ACCAGCACGGCGGACGTGCGCTACCGTGCTGCTCCCTGGGA < 41bp 1 0.524315685680189 1 0.0516352653503418 experiment 0.951368628639622 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68822727 chr11:68822733 synonymous SNV . 0 27 hm5C_associated_SNPs_46039 0 0 0 0 2 chromatin 1 0.500231643938773 1 0.999536712122455 hm5C_site_44766 DeepMRMD:1;iRNA_m5C:0.999536712122455 44767 chr17 49247315 49247315 1 + C T UCEC 49247300 + 49247280 49247320 41 CATTTTCACACTTTCGAGGTCTGGGAGGGGCTGAACGTGGT CATTTTCACACTTTCGAGGTCTGGGAGGGGCTGAATGTGGT < 41bp 1 0.541612029486789 1 0.377642869949341 experiment 0.916775941026421 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247300 chr17:49247315 synonymous SNV . 0 36 hm5C_associated_SNPs_46040 0 0 1 0 2 unknown 1 0.500232855806796 1 0.999534288386409 hm5C_site_44767 DeepMRMD:1;iRNA_m5C:0.999534288386409 44768 chr17 49247315 49247315 1 + C T UCEC 49247310 + 49247290 49247330 41 CTTTCGAGGTCTGGGAGGGGCTGAACGTGGTGAAGACAGGC CTTTCGAGGTCTGGGAGGGGCTGAATGTGGTGAAGACAGGC < 41bp 1 0.660197321014977 1 0.494282096624374 experiment 0.679605357970046 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NME1-NME2;NME2 ENSG00000011052;ENSG00000243678 CDS Human other chr17:49247310 chr17:49247315 synonymous SNV . 0 26 hm5C_associated_SNPs_46041 0 0 1 0 2 unknown 1 0.500231614363816 1 0.999536771272367 hm5C_site_44768 DeepMRMD:1;iRNA_m5C:0.999536771272367 44769 chr12 57922970 57922970 1 + C T UCEC 57922978 + 57922958 57922998 41 CCTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAG CCTCCCCGGGCCTGCCCTGGCCGTCCTGCCAAAAACAAGAG < 41bp 1 0.0693537381840045 1 0.193139612674713 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MBD6 ENSG00000166987 CDS Human protein_coding chr12:57922978 chr12:57922970 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_46042 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_44769 DeepMRMD:1;iRNA_m5C:0.999536712157815 44770 chr15 31221496 31221496 1 + G A UCEC 31221493 + 31221473 31221513 41 TGCAGCTGATTCATGATGCCCCCGAGGAGAGCCTGCGGGCC TGCAGCTGATTCATGATGCCCCCAAGGAGAGCCTGCGGGCC < 41bp 1 0.667264107984992 1 0.711269021034241 experiment 0.665471784030016 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control FAN1 ENSG00000198690 CDS Human protein_coding chr15:31221493 chr15:31221496 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_46043 0 0 1 0 1 Cytosol 1 0.500231643920434 0.577461957931518 0.999536712159133 hm5C_site_44770 DeepMRMD:0.577461957931518;iRNA_m5C:0.999536712159133 44771 chr19 5041222 5041222 1 + C T UCEC 5041241 + 5041221 5041261 41 CCGATCTACGGGGCTGACATCAGCGGCTCTTTGTATGATGA CTGATCTACGGGGCTGACATCAGCGGCTCTTTGTATGATGA < 41bp 1 0.44053600532731 1 0.809845328330994 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5041241 chr19:5041222 nonsynonymous SNV 0.859 4 2 hm5C_associated_SNPs_46044 0 0 1 0 2 Cytosol 1 0.500230447854283 0.380309343338012 0.999539104291435 hm5C_site_44771 DeepMRMD:0.380309343338012;iRNA_m5C:0.999539104291435 44772 chr2 102486175 102486175 1 + C T UCEC 102486184 + 102486164 102486204 41 CAGTGAGGAGTCGGGGACGACGGATGAGGAGGACGACGATG CAGTGAGGAGTTGGGGACGACGGATGAGGAGGACGACGATG < 41bp 1 0.686831786470311 1 0.599751234054565 experiment 0.626336427059378 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102486184 chr2:102486175 nonsynonymous SNV 0.992 3 12 hm5C_associated_SNPs_46045 0 0 1 0 1 Ribosome 1 0.50023164393975 0.80049753189087 0.9995367121205 hm5C_site_44772 DeepMRMD:0.80049753189087;iRNA_m5C:0.9995367121205 44773 chr5 118529632 118529632 1 + A G UCEC 118529637 + 118529617 118529657 41 TAGCATCAGATTTCCATCTCCAGGAACATTCTAATTCAAAT TAGCATCAGATTTCCGTCTCCAGGAACATTCTAATTCAAAT < 41bp 1 0.290931741178832 1 0.827045619487762 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DMXL1 ENSG00000172869 CDS Human protein_coding chr5:118529637 chr5:118529632 nonsynonymous SNV 0.994 1 16 hm5C_associated_SNPs_46047 0 0 0 0 1 Cytosol 1 0.500231650758109 0.345908761024476 0.999536698483781 hm5C_site_44773 DeepMRMD:0.345908761024476;iRNA_m5C:0.999536698483781 44774 chr1 171544168 171544168 1 + A G UCEC 171544172 + 171544152 171544192 41 AACTGGAGTCAGCAGTAGTGCCAGTGGACCAAGCACTGCTA AACTGGAGTCAGCAGTGGTGCCAGTGGACCAAGCACTGCTA < 41bp 1 0.195387186053241 1 0.448800146579742 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171544172 chr1:171544168 nonsynonymous SNV 1.000 1 17 hm5C_associated_SNPs_46048 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_44774 DeepMRMD:1;iRNA_m5C:0.999536712157816 44775 chr19 39979217 39979217 1 + C T UCEC 39979223 + 39979203 39979243 41 ACGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGAC ACGTGCGAACCGTGTTGGAGCACTATGCCCTGGAGGATGAC < 41bp 1 0.45751994209663 1 0.0738299787044525 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39979223 chr19:39979217 synonymous SNV . 0 15 hm5C_associated_SNPs_46049 0 0 1 0 2 Ribosome 1 0.50023164392232 1 0.99953671215536 hm5C_site_44775 DeepMRMD:1;iRNA_m5C:0.99953671215536 44776 chr14 39649925 39649925 1 + G C UCEC 39649941 + 39649921 39649961 41 GGAAGAGGAAAAGGAAATAGCGATTGTTCATAGTGATGCAG GGAACAGGAAAAGGAAATAGCGATTGTTCATAGTGATGCAG < 41bp 1 0.391139399686434 1 0.132819473743439 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PNN ENSG00000100941 CDS Human protein_coding chr14:39649941 chr14:39649925 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_46050 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44776 DeepMRMD:1;iRNA_m5C:0.999536712157815 44777 chr5 141353262 141353262 1 + A G UCEC 141353260 + 141353240 141353280 41 GTCTGTCCAAGGTGGAGAAACCAGGATCTATTTGGATTTGC GTCTGTCCAAGGTGGAGAAACCGGGATCTATTTGGATTTGC < 41bp 1 0.686349686013076 1 0.139412850141525 experiment 0.627300627973849 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RNF14 ENSG00000013561 CDS Human protein_coding chr5:141353260 chr5:141353262 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_46052 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44777 DeepMRMD:1;iRNA_m5C:0.999536712157815 44778 chr14 72152256 72152256 1 + T C UCEC 72152244 + 72152224 72152264 41 CAGGTGCAGAGTCCCATGACCTCGCGGCTGAATGCTGGAAA CAGGTGCAGAGTCCCATGACCTCGCGGCTGAACGCTGGAAA < 41bp 1 0.473534948468281 1 0.393606126308441 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152244 chr14:72152256 synonymous SNV . 0 33 hm5C_associated_SNPs_46053 0 0 1 0 1 Nucleus 1 0.500231643921087 1 0.999536712157826 hm5C_site_44778 DeepMRMD:1;iRNA_m5C:0.999536712157826 44779 chrX 133511652 133511652 1 + C G UCEC 133511658 + 133511638 133511678 41 TTTAAAAATCATGTCAAGCTCAGTTGAACAGAAAAAAGGGC TTTAAAAATCATGTGAAGCTCAGTTGAACAGAAAAAAGGGC < 41bp 1 0.230945902682736 1 0.30511462688446 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133511658 chrX:133511652 stopgain 1.000 1 15 hm5C_associated_SNPs_46054 0 0 1 0 1 Ribosome 1 0.500231643921097 1 0.999536712157806 hm5C_site_44779 DeepMRMD:1;iRNA_m5C:0.999536712157806 44780 chr20 31019209 31019209 1 + C T UCEC 31019221 + 31019201 31019241 41 GCCCTGATCAACTCTCGGACCTTCCATGCCTTACCATCACA GCCCTGATTAACTCTCGGACCTTCCATGCCTTACCATCACA < 41bp 1 0.0805353888682617 1 0.0821585059165955 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31019221 chr20:31019209 synonymous SNV . 0 9 hm5C_associated_SNPs_46055 0 0 1 0 2 Nucleus 1 0.500231643921096 1 0.999536712157808 hm5C_site_44780 DeepMRMD:1;iRNA_m5C:0.999536712157808 44781 chr10 129141972 129141972 1 + G A UCEC 129141960 + 129141940 129141980 41 GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTC GCTTTCCTTACTCAAGAGTCCCTGCAACTGGAAAATTTTTC < 41bp 1 0.00974155226875579 1 0.0625201165676117 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141960 chr10:129141972 synonymous SNV . 0 33 hm5C_associated_SNPs_46056 0 0 1 0 2 Nucleus 1 0.500231644585011 1 0.999536710829978 hm5C_site_44781 DeepMRMD:1;iRNA_m5C:0.999536710829978 44782 chr10 129141972 129141972 1 + G A UCEC 129141961 + 129141941 129141981 41 CTTTCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCA CTTTCCTTACTCAAGAGTCCCTGCAACTGGAAAATTTTTCA < 41bp 1 0.222011308818899 1 0.295406699180603 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141961 chr10:129141972 synonymous SNV . 0 32 hm5C_associated_SNPs_46057 0 0 1 0 2 Nucleus 1 0.500231643932363 1 0.999536712135274 hm5C_site_44782 DeepMRMD:1;iRNA_m5C:0.999536712135274 44783 chr10 129141972 129141972 1 + G A UCEC 129141964 + 129141944 129141984 41 TCCTTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGT TCCTTACTCAAGAGTCCCTGCAACTGGAAAATTTTTCAAGT < 41bp 1 0.0910304432244267 1 0.19410029053688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141964 chr10:129141972 synonymous SNV . 0 29 hm5C_associated_SNPs_46058 0 0 1 0 2 Nucleus 1 0.500231643921003 1 0.999536712157993 hm5C_site_44783 DeepMRMD:1;iRNA_m5C:0.999536712157993 44784 chr10 129141972 129141972 1 + G A UCEC 129141967 + 129141947 129141987 41 TTACTCAAGAGTCCCTGCAACTGGAGAATTTTTCAAGTGCC TTACTCAAGAGTCCCTGCAACTGGAAAATTTTTCAAGTGCC < 41bp 1 0.413478444391283 1 0.670081198215485 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141967 chr10:129141972 synonymous SNV . 0 26 hm5C_associated_SNPs_46059 0 0 1 0 2 Nucleus 1 0.500231666546004 0.65983760356903 0.999536666907992 hm5C_site_44784 DeepMRMD:0.65983760356903;iRNA_m5C:0.999536666907992 44785 chr10 129141972 129141972 1 + G A UCEC 129141980 + 129141960 129142000 41 CCTGCAACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAA CCTGCAACTGGAAAATTTTTCAAGTGCCAAGAGAGCCAAAA < 41bp 1 0.292125214836635 1 0.936692476272583 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141980 chr10:129141972 synonymous SNV . 0 13 hm5C_associated_SNPs_46060 0 0 1 0 2 Nucleus 1 0.500231643867109 0.126615047454834 0.999536712265782 hm5C_site_44785 DeepMRMD:0.126615047454834;iRNA_m5C:0.999536712265782 44786 chr10 129141972 129141972 1 + G A UCEC 129141986 + 129141966 129142006 41 ACTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA ACTGGAAAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTA < 41bp 1 0.0467919042857434 1 0.201526492834091 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141986 chr10:129141972 synonymous SNV . 0 7 hm5C_associated_SNPs_46061 0 0 1 0 2 Nucleus 1 0.500232053481029 1 0.999535893037941 hm5C_site_44786 DeepMRMD:1;iRNA_m5C:0.999535893037941 44787 chr10 129141972 129141972 1 + G A UCEC 129141987 + 129141967 129142007 41 CTGGAGAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA CTGGAAAATTTTTCAAGTGCCAAGAGAGCCAAAATCCTTAA < 41bp 1 0.46143027286047 1 0.609283745288849 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient DOCK1 ENSG00000150760 CDS Human protein_coding chr10:129141987 chr10:129141972 synonymous SNV . 0 6 hm5C_associated_SNPs_46062 0 0 1 0 2 Nucleus 1 0.500231643920629 0.781432509422302 0.999536712158741 hm5C_site_44787 DeepMRMD:0.781432509422302;iRNA_m5C:0.999536712158741 44788 chr20 62521232 62521232 1 + C T UCEC 62521246 + 62521226 62521266 41 GAACGGCAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG GAACGGTAGTGACAACCTCCCTTCCTCAGCGGGGAGTGGTG < 41bp 1 0.223954563461157 1 0.0559441447257996 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62521246 chr20:62521232 synonymous SNV 0.971 0 7 hm5C_associated_SNPs_46063 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44788 DeepMRMD:1;iRNA_m5C:0.999536712157815 44789 chr1 214794263 214794263 1 + T C UCEC 214794259 + 214794239 214794279 41 ACAATTCTAGCAGTCCTCATCTTTTGGATCAATTAAAAGCG ACAATTCTAGCAGTCCTCATCTTTCGGATCAATTAAAAGCG < 41bp 1 0.0291336624531981 1 0.173876911401749 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CENPF ENSG00000117724 CDS Human protein_coding chr1:214794259 chr1:214794263 nonsynonymous SNV 0.933 4 25 hm5C_associated_SNPs_46064 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_44789 DeepMRMD:1;iRNA_m5C:0.999536712157814 44790 chr10 114711283 114711283 1 + T C UCEC 114711291 + 114711271 114711311 41 AAGGGGCCACCGTATCCCGGCTACCCCTTCATCATGATCCC AAGGGGCCACCGCATCCCGGCTACCCCTTCATCATGATCCC < 41bp 1 0.397667686559005 1 0.0675317645072937 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114711291 chr10:114711283 nonsynonymous SNV 0.979 4 13 hm5C_associated_SNPs_46066 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_44790 DeepMRMD:1;iRNA_m5C:0.999536712157815 44791 chr1 223934711 223934711 1 + C T UCEC 223934721 + 223934701 223934741 41 TCAACGGATGCTATGAAGCGCTATCAGGGGGTGCCACCACT TCAACGGATGTTATGAAGCGCTATCAGGGGGTGCCACCACT < 41bp 1 0.0669942885594445 1 0.0720525681972504 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223934721 chr1:223934711 synonymous SNV . 0 11 hm5C_associated_SNPs_46068 0 0 1 0 1 Ribosome 1 0.500231643907394 1 0.999536712185212 hm5C_site_44791 DeepMRMD:1;iRNA_m5C:0.999536712185212 44792 chr1 206902140 206902140 1 + A C UCEC 206902135 + 206902115 206902155 41 TGCCCGCACATCGTACGGATCGTGGATGTGTACGAGAATCT TGCCCGCACATCGTACGGATCGTGGCTGTGTACGAGAATCT < 41bp 1 0.470307063797062 1 0.119911551475525 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206902135 chr1:206902140 nonsynonymous SNV 0.993 3 26 hm5C_associated_SNPs_46069 0 0 1 0 2 Ribosome 1 0.500231579568501 1 0.999536840862997 hm5C_site_44792 DeepMRMD:1;iRNA_m5C:0.999536840862997 44793 chr6 88374525 88374525 1 + A G UCEC 88374522 + 88374502 88374542 41 CGCCCCAGACATCTGCATAGCATACAAACTGCACCTAGAGT CGCCCCAGACATCTGCATAGCATGCAAACTGCACCTAGAGT < 41bp 1 0.212508341952535 1 0.182071089744568 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ORC3 ENSG00000135336 CDS Human protein_coding chr6:88374522 chr6:88374525 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_46070 0 0 1 0 2 Cytosol 1 0.500231645599084 1 0.999536708801833 hm5C_site_44793 DeepMRMD:1;iRNA_m5C:0.999536708801833 44794 chr10 134981000 134981000 1 + C G UCEC 134980995 + 134980975 134981015 41 TCCATGCGGAGCGTGGCCCACGCCGCCATCTTCCAGAGCCT TCCATGCGGAGCGTGGCCCACGCCGGCATCTTCCAGAGCCT < 41bp 1 0.55088106493868 1 0.340478658676147 experiment 0.89823787012264 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:134980995 chr10:134981000 nonsynonymous SNV 0.828 1 26 hm5C_associated_SNPs_46071 0 0 0 0 1 Endoplasmic reticulum 1 0.500231661196055 1 0.999536677607891 hm5C_site_44794 DeepMRMD:1;iRNA_m5C:0.999536677607891 44795 chr7 127342515 127342515 1 + A G UCEC 127342535 + 127342515 127342555 41 AGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT GGTGTGGTCAGGGCCCTGCTCCTCCCAGATTACTACCTGGT < 41bp 1 0.0479086164408242 1 0.127466887235641 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127342535 chr7:127342515 nonsynonymous SNV 1.000 2 1 hm5C_associated_SNPs_46072 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44795 DeepMRMD:1;iRNA_m5C:0.999536712157815 44796 chr5 154330456 154330456 1 + T C UCEC 154330472 + 154330452 154330492 41 AAATTGTTTATCCTCCACAACTGCCTGGAGAACCTCGGAGA AAATCGTTTATCCTCCACAACTGCCTGGAGAACCTCGGAGA < 41bp 1 0.468547013014833 1 0.058233916759491 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154330472 chr5:154330456 synonymous SNV . 0 5 hm5C_associated_SNPs_46073 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44796 DeepMRMD:1;iRNA_m5C:0.999536712157815 44797 chrX 118602482 118602482 1 + A G UCEC 118602468 + 118602448 118602488 41 CGTCCTGCAGCAGTCTGCCTCCTCTTTCAACATGACAGATG CGTCCTGCAGCAGTCTGCCTCCTCTTTCAACATGGCAGATG < 41bp 1 0.406066047571353 1 0.0959844589233398 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118602468 chrX:118602482 nonsynonymous SNV 1.000 0 35 hm5C_associated_SNPs_46074 0 0 1 0 0 Cytosol 1 0.500231903110826 1 0.999536193778347 hm5C_site_44797 DeepMRMD:1;iRNA_m5C:0.999536193778347 44798 chrX 118602482 118602482 1 + A G UCEC 118602469 + 118602449 118602489 41 GTCCTGCAGCAGTCTGCCTCCTCTTTCAACATGACAGATGC GTCCTGCAGCAGTCTGCCTCCTCTTTCAACATGGCAGATGC < 41bp 1 0.547707042611889 1 0.539525508880615 experiment 0.904585914776222 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118602469 chrX:118602482 nonsynonymous SNV 1.000 0 34 hm5C_associated_SNPs_46075 0 0 1 0 0 Cytosol 1 0.500231645647029 0.92094898223877 0.999536708705942 hm5C_site_44798 DeepMRMD:0.92094898223877;iRNA_m5C:0.999536708705942 44799 chr1 155033954 155033954 1 + A G UCEC 155033936 + 155033916 155033956 41 CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCAAG CCCCCCCTTCCAGGCCGCTGCCGCCTGACCCTGTGTCCGAG < 41bp 1 0.24362262778295 1 0.531488239765167 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155033936 chr1:155033954 nonsynonymous SNV 0.999 3 39 hm5C_associated_SNPs_46077 0 0 1 0 3 Ribosome 1 0.500231644026279 0.937023520469666 0.999536711947443 hm5C_site_44799 DeepMRMD:0.937023520469666;iRNA_m5C:0.999536711947443 44800 chr5 37697793 37697793 1 + T C UCEC 37697804 + 37697784 37697824 41 GCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTC GCTCATGACCCGGGCACAGACACTTCTTGCGTGACTTTTTC < 41bp 1 0.385093290878185 1 0.0567492544651031 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697804 chr5:37697793 nonsynonymous SNV 0.991 0 10 hm5C_associated_SNPs_46078 0 0 1 2 2 Nucleus 1 0.500231643993455 1 0.999536712013089 hm5C_site_44800 DeepMRMD:1;iRNA_m5C:0.999536712013089 44801 chr5 37697793 37697793 1 + T C UCEC 37697806 + 37697786 37697826 41 TCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCT TCATGACCCGGGCACAGACACTTCTTGCGTGACTTTTTCCT < 41bp 1 0.236267017535377 1 0.0515223145484924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control WDR70 ENSG00000082068 CDS Human protein_coding chr5:37697806 chr5:37697793 nonsynonymous SNV 0.991 0 8 hm5C_associated_SNPs_46079 0 0 1 2 2 Nucleus 1 0.500231643921352 1 0.999536712157295 hm5C_site_44801 DeepMRMD:1;iRNA_m5C:0.999536712157295 44802 chr15 91312387 91312387 1 + T C UCEC 91312388 + 91312368 91312408 41 TGCAAGTAACAGACTCATTTCTACTCTGGAGAATCTCTATG TGCAAGTAACAGACTCATTCCTACTCTGGAGAATCTCTATG < 41bp 1 0.29299470533206 1 0.027360588312149 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BLM ENSG00000197299 CDS Human protein_coding chr15:91312388 chr15:91312387 nonsynonymous SNV 0.964 2 20 hm5C_associated_SNPs_46081 0 0 1 0 2 Ribosome 1 0.500231644041558 1 0.999536711916883 hm5C_site_44802 DeepMRMD:1;iRNA_m5C:0.999536711916883 44803 chr8 77619841 77619841 1 + T C UCEC 77619825 + 77619805 77619845 41 TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCTGTCC TCCGGCTTGCCAGTGGTCAGCTAATGGGTGATGACCCGTCC < 41bp 1 0.240253722880132 1 0.587201237678528 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77619825 chr8:77619841 nonsynonymous SNV 1.000 3 37 hm5C_associated_SNPs_46082 0 0 0 0 1 Ribosome 1 0.50023164392111 0.825597524642944 0.999536712157779 hm5C_site_44803 DeepMRMD:0.825597524642944;iRNA_m5C:0.999536712157779 44804 chr5 147819238 147819238 1 + T C UCEC 147819249 + 147819229 147819269 41 AGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGT AGCAGAAGCCATTTAGTGGTCCCTACCCCTATCACATCTGT < 41bp 1 0.231009593272157 1 0.0447927117347717 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819249 chr5:147819238 nonsynonymous SNV 0.955 3 10 hm5C_associated_SNPs_46083 0 0 1 0 1 Ribosome 1 0.50023164392105 1 0.999536712157899 hm5C_site_44804 DeepMRMD:1;iRNA_m5C:0.999536712157899 44805 chr5 147819238 147819238 1 + T C UCEC 147819251 + 147819231 147819271 41 CAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTAT CAGAAGCCATTTAGTGGTCCCTACCCCTATCACATCTGTAT < 41bp 1 0.118417625383208 1 0.0238787531852722 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819251 chr5:147819238 nonsynonymous SNV 0.955 3 8 hm5C_associated_SNPs_46084 0 0 1 0 1 Ribosome 1 0.500231643978672 1 0.999536712042655 hm5C_site_44805 DeepMRMD:1;iRNA_m5C:0.999536712042655 44806 chr5 147819238 147819238 1 + T C UCEC 147819256 + 147819236 147819276 41 GCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCC GCCATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCC < 41bp 1 0.0708595958904437 1 0.114633679389954 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819256 chr5:147819238 nonsynonymous SNV 0.955 3 3 hm5C_associated_SNPs_46085 0 0 1 0 1 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_44806 DeepMRMD:1;iRNA_m5C:0.999536712157812 44807 chr5 147819238 147819238 1 + T C UCEC 147819257 + 147819237 147819277 41 CTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCA CCATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCA < 41bp 1 0.0832390896697855 1 0.218760430812836 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147819257 chr5:147819238 nonsynonymous SNV 0.955 3 2 hm5C_associated_SNPs_46086 0 0 1 0 1 Ribosome 1 0.500231616692458 1 0.999536766615084 hm5C_site_44807 DeepMRMD:1;iRNA_m5C:0.999536766615084 44808 chr1 112999419 112999419 1 + G A UCEC 112999436 + 112999416 112999456 41 TAAGCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACC TAAACGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACC < 41bp 1 0.486249036748498 1 0.532365202903748 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999436 chr1:112999419 synonymous SNV . 0 4 hm5C_associated_SNPs_46087 0 0 0 0 0 Ribosome 1 0.500231643921092 0.935269594192504 0.999536712157815 hm5C_site_44808 DeepMRMD:0.935269594192504;iRNA_m5C:0.999536712157815 44809 chr1 112999419 112999419 1 + G A UCEC 112999439 + 112999419 112999459 41 GCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGT ACGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGT < 41bp 1 0.531165442890958 1 0.402101576328278 experiment 0.937669114218083 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999439 chr1:112999419 synonymous SNV . 0 1 hm5C_associated_SNPs_46088 0 0 0 0 0 Ribosome 1 0.500231268450837 1 0.999537463098326 hm5C_site_44809 DeepMRMD:1;iRNA_m5C:0.999537463098326 44810 chr16 15111278 15111278 1 + T C UCEC 15111272 + 15111252 15111292 41 ACTGTATAAACACGATGACCCTGCCTTGGTAAGTTTCCACT ACTGTATAAACACGATGACCCTGCCTCGGTAAGTTTCCACT < 41bp 1 0.320163356261867 1 0.0577011406421661 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15111272 chr16:15111278 nonsynonymous SNV 0.973 3 27 hm5C_associated_SNPs_46089 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44810 DeepMRMD:1;iRNA_m5C:0.999536712157815 44811 chr17 80529626 80529626 1 + C T UCEC 80529633 + 80529613 80529653 41 CGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCGATTACG CGCCTTACTCCTATGCGCAGCTGATAGTTCAGGCGATTACG < 41bp 1 0.0833771866739308 1 0.0755923986434937 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529633 chr17:80529626 synonymous SNV . 0 14 hm5C_associated_SNPs_46090 0 0 1 0 1 Cytosol 1 0.500231598293047 1 0.999536803413905 hm5C_site_44811 DeepMRMD:1;iRNA_m5C:0.999536803413905 44812 chr4 148555321 148555321 1 + A G UCEC 148555322 + 148555302 148555342 41 GAAAACTTTATATTAAAGGACGGACAGTCAGGGGACATCCC GAAAACTTTATATTAAAGGGCGGACAGTCAGGGGACATCCC < 41bp 1 0.125550927644916 1 0.14733037352562 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM184C ENSG00000164168 CDS Human protein_coding chr4:148555322 chr4:148555321 synonymous SNV . 0 20 hm5C_associated_SNPs_46091 0 0 1 0 1 Nucleus 1 0.500231643921098 1 0.999536712157803 hm5C_site_44812 DeepMRMD:1;iRNA_m5C:0.999536712157803 44813 chr17 30325897 30325897 1 + G A UCEC 30325888 + 30325868 30325908 41 AAAAGGGGGAATCTGCTTCCCCTGCAAACGAAGAAATAACT AAAAGGGGGAATCTGCTTCCCCTGCAAACAAAGAAATAACT < 41bp 1 0.0663678158574032 1 0.457463562488556 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30325888 chr17:30325897 nonsynonymous SNV 1.000 1 30 hm5C_associated_SNPs_46093 0 0 1 0 0 Ribosome 1 0.500231643921072 1 0.999536712157856 hm5C_site_44813 DeepMRMD:1;iRNA_m5C:0.999536712157856 44814 chr9 32440573 32440573 1 + C T UCEC 32440574 + 32440554 32440594 41 GAGACTGGGCAGCTAAGGGCCCTTTCCTGCTGGTGAGTATG GAGACTGGGCAGCTAAGGGTCCTTTCCTGCTGGTGAGTATG < 41bp 1 0.0201118943896876 1 0.0338228046894073 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACO1 ENSG00000122729 CDS Human protein_coding chr9:32440574 chr9:32440573 synonymous SNV . 0 20 hm5C_associated_SNPs_46094 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44814 DeepMRMD:1;iRNA_m5C:0.999536712157815 44815 chr3 97661184 97661184 1 + A G UCEC 97661188 + 97661168 97661208 41 CACCTGGAGCTAAAGTAGCTCTATGGACTGAACATGGGCAA CACCTGGAGCTAAAGTGGCTCTATGGACTGAACATGGGCAA < 41bp 1 0.180969218107631 1 0.126392632722855 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CRYBG3 ENSG00000080200 CDS Human protein_coding chr3:97661188 chr3:97661184 synonymous SNV . 0 17 hm5C_associated_SNPs_46095 0 0 1 0 1 Cytosol 1 0.500226123863821 1 0.999547752272357 hm5C_site_44815 DeepMRMD:1;iRNA_m5C:0.999547752272357 44816 chr1 6681504 6681504 1 + G A UCEC 6681488 + 6681468 6681508 41 CAGATGACGATTCCTGGGACCTCGTGACCTGCTTCTGCATG CAGATGACGATTCCTGGGACCTCGTGACCTGCTTCTACATG < 41bp 1 0.383819843316605 1 0.0184022784233093 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681488 chr1:6681504 nonsynonymous SNV 1.000 5 37 hm5C_associated_SNPs_46096 0 0 1 0 1 cytosol 1 0.500231644649417 1 0.999536710701167 hm5C_site_44816 DeepMRMD:1;iRNA_m5C:0.999536710701167 44817 chr12 6941055 6941055 1 + C A UCEC 6941063 + 6941043 6941083 41 GCCATGGAGCACCTGGGGACCAGCTTCAAGGATCCTGTGAG GCCATGGAGCACATGGGGACCAGCTTCAAGGATCCTGTGAG < 41bp 1 0.367920176856968 1 0.295584917068481 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control P3H3 ENSG00000110811 CDS Human protein_coding chr12:6941063 chr12:6941055 nonsynonymous SNV 0.991 3 13 hm5C_associated_SNPs_46097 0 0 1 0 2 membrane 1 0.500231646287444 1 0.999536707425112 hm5C_site_44817 DeepMRMD:1;iRNA_m5C:0.999536707425112 44818 chr17 42636746 42636746 1 + A G UCEC 42636759 + 42636739 42636779 41 TGAGACCACCGTGTGAGGGACGCCCCCAGGCCGGAACCGCG TGAGACCGCCGTGTGAGGGACGCCCCCAGGCCGGAACCGCG < 41bp 1 0.383154575455747 1 0.467890977859497 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FZD2 ENSG00000180340 CDS Human protein_coding chr17:42636759 chr17:42636746 nonsynonymous SNV 0.979 0 8 hm5C_associated_SNPs_46098 0 0 1 0 0 exosome 1 0.50023164378495 1 0.999536712430099 hm5C_site_44818 DeepMRMD:1;iRNA_m5C:0.999536712430099 44819 chr19 42398363 42398363 1 + A G UCEC 42398364 + 42398344 42398384 41 GACAAGAAGTCGGGGAGGAACTTCTTCCGGAAAAAGGTGCT GACAAGAAGTCGGGGAGGAGCTTCTTCCGGAAAAAGGTGCT < 41bp 1 0.123581805254972 1 0.367242693901062 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42398364 chr19:42398363 nonsynonymous SNV 0.993 0 20 hm5C_associated_SNPs_46099 0 0 1 0 2 Cytosol 1 0.500231643921052 1 0.999536712157897 hm5C_site_44819 DeepMRMD:1;iRNA_m5C:0.999536712157897 44820 chr11 62655902 62655902 1 + T C UCEC 62655920 + 62655900 62655940 41 CGTTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC CGCTCTCCGCTGGGCCTGGACTCTTCTCCTATATCCGCCAC < 41bp 1 0.389279320487 1 0.160574346780777 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62655920 chr11:62655902 nonsynonymous SNV 0.001 1 3 hm5C_associated_SNPs_46100 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44820 DeepMRMD:1;iRNA_m5C:0.999536712157815 44821 chr1 16056355 16056355 1 + C T UCEC 16056369 + 16056349 16056389 41 CCCCAGCATCCTGACGGATGCCACCATGGAGAAGCTGGCAC CCCCAGTATCCTGACGGATGCCACCATGGAGAAGCTGGCAC < 41bp 1 0.0657518513542815 1 0.0742992162704468 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056369 chr1:16056355 synonymous SNV . 0 7 hm5C_associated_SNPs_46101 0 0 1 0 2 chromatin 1 0.500231643913051 1 0.999536712173898 hm5C_site_44821 DeepMRMD:1;iRNA_m5C:0.999536712173898 44822 chr1 16056355 16056355 1 + C T UCEC 16056373 + 16056353 16056393 41 AGCATCCTGACGGATGCCACCATGGAGAAGCTGGCACTGGC AGTATCCTGACGGATGCCACCATGGAGAAGCTGGCACTGGC < 41bp 1 0.468183250057489 1 0.405333489179611 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16056373 chr1:16056355 synonymous SNV . 0 3 hm5C_associated_SNPs_46102 0 0 1 0 2 chromatin 1 0.500231643919922 1 0.999536712160157 hm5C_site_44822 DeepMRMD:1;iRNA_m5C:0.999536712160157 44823 chr1 92769569 92769569 1 + C T UCEC 92769553 + 92769533 92769573 41 GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTCGTGG GGGGAGGTTCATTACACCTGCTCACTACAGTGATGTTGTGG < 41bp 1 0.165011525533711 1 0.07647705078125 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92769553 chr1:92769569 synonymous SNV . 0 37 hm5C_associated_SNPs_46103 0 0 1 0 2 Cytosol 1 0.50023164392204 1 0.999536712155919 hm5C_site_44823 DeepMRMD:1;iRNA_m5C:0.999536712155919 44824 chr5 147817904 147817904 1 + G A UCEC 147817898 + 147817878 147817918 41 TTGTTTTCATTTTGTAGCTACCAGGTGCAGGGTACTAAAAC TTGTTTTCATTTTGTAGCTACCAGGTACAGGGTACTAAAAC < 41bp 1 0.126616051756935 1 0.125127643346786 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147817898 chr5:147817904 nonsynonymous SNV 1.000 4 27 hm5C_associated_SNPs_46104 0 0 0 0 1 Ribosome 1 0.500231645328212 1 0.999536709343576 hm5C_site_44824 DeepMRMD:1;iRNA_m5C:0.999536709343576 44825 chr16 12450123 12450123 1 + A T UCEC 12450135 + 12450115 12450155 41 GCTCATCGATCTCCGGGGACCGGTGAGTGTTTCCCCAACCC GCTCATCGTTCTCCGGGGACCGGTGAGTGTTTCCCCAACCC < 41bp 1 0.399548645372778 1 0.508951961994171 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX29 ENSG00000048471 CDS Human protein_coding chr16:12450135 chr16:12450123 nonsynonymous SNV 0.873 2 9 hm5C_associated_SNPs_46106 0 0 1 0 1 Nucleus 1 0.500231648274621 0.982096076011658 0.999536703450757 hm5C_site_44825 DeepMRMD:0.982096076011658;iRNA_m5C:0.999536703450757 44826 chr19 14561806 14561806 1 + G A UCEC 14561797 + 14561777 14561817 41 GGGGAGCTGCCCGCCGACCACCCCAAGGGGCGGCTGCTGCG GGGGAGCTGCCCGCCGACCACCCCAAGGGACGGCTGCTGCG < 41bp 1 0.6558514026392 1 0.761036038398743 experiment 0.688297194721599 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561797 chr19:14561806 synonymous SNV . 0 30 hm5C_associated_SNPs_46107 0 0 1 0 1 Ribosome 1 0.500231643920309 0.477927923202514 0.999536712159382 hm5C_site_44826 DeepMRMD:0.477927923202514;iRNA_m5C:0.999536712159382 44827 chr17 8192656 8192656 1 + A G UCEC 8192673 + 8192653 8192693 41 AGAACCTGGCCCTGAGGGGCCGCTGTCAAGAAGCCTGGGTC AGAGCCTGGCCCTGAGGGGCCGCTGTCAAGAAGCCTGGGTC < 41bp 1 0.480380758340732 1 0.352684706449509 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RANGRF ENSG00000108961 CDS Human protein_coding chr17:8192673 chr17:8192656 nonsynonymous SNV 0.791 0 4 hm5C_associated_SNPs_46108 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_44827 DeepMRMD:1;iRNA_m5C:0.999536712157815 44828 chr7 150761787 150761787 1 + C T UCEC 150761806 + 150761786 150761826 41 GCCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC GTCAGCGAGGCTGAGGGGGCCCGGGCTCTCACTCAGCCGTC < 41bp 1 0.566024325606831 1 0.439417093992233 experiment 0.867951348786339 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150761806 chr7:150761787 nonsynonymous SNV 0.154 0 2 hm5C_associated_SNPs_46109 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44828 DeepMRMD:1;iRNA_m5C:0.999536712157815 44829 chr9 139733447 139733447 1 + C T UCEC 139733467 + 139733447 139733487 41 CGCTGCCTGCAGGCCCCGTCCCCAGTCAAGACATCACTCTT TGCTGCCTGCAGGCCCCGTCCCCAGTCAAGACATCACTCTT < 41bp 1 0.188669427354359 1 0.303894519805908 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139733467 chr9:139733447 nonsynonymous SNV 0.002 0 1 hm5C_associated_SNPs_46110 0 0 1 0 1 chromatin 1 0.500231651500046 1 0.999536696999908 hm5C_site_44829 DeepMRMD:1;iRNA_m5C:0.999536696999908 44830 chr3 142756136 142756136 1 + T C UCEC 142756138 + 142756118 142756158 41 TCGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGAT TCGATGATCTTGATGGAGCCCCTATAAAAAGTCTTGATGAT < 41bp 1 0.0495306097309445 1 0.0622395575046539 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142756138 chr3:142756136 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_46111 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44830 DeepMRMD:1;iRNA_m5C:0.999536712157815 44831 chr3 142756136 142756136 1 + T C UCEC 142756139 + 142756119 142756159 41 CGATGATCTTGATGGAGTCCCTATAAAAAGTCTTGATGATG CGATGATCTTGATGGAGCCCCTATAAAAAGTCTTGATGATG < 41bp 1 0.239219723408455 1 0.251822710037231 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control U2SURP ENSG00000163714 CDS Human protein_coding chr3:142756139 chr3:142756136 nonsynonymous SNV 1.000 3 18 hm5C_associated_SNPs_46112 0 0 1 0 1 Cytosol 1 0.500231643322499 1 0.999536713355003 hm5C_site_44831 DeepMRMD:1;iRNA_m5C:0.999536713355003 44832 chr16 72141609 72141609 1 + C T UCEC 72141626 + 72141606 72141646 41 ATGCTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT ATGTTCATCGTGTCCTGTGACATGGGCTGCAGCTCCGAGAT < 41bp 1 0.699526025786557 1 0.269682705402374 experiment 0.600947948426885 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141626 chr16:72141609 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_46113 0 0 1 0 2 Cytosol 1 0.500231649476935 1 0.99953670104613 hm5C_site_44832 DeepMRMD:1;iRNA_m5C:0.99953670104613 44833 chr17 4859388 4859388 1 + T C UCEC 4859378 + 4859358 4859398 41 CCAGGCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGA CCAGGCCGTTGAGAAGAAGGCCTGCAACTGCCTGCTGCTGA < 41bp 1 0.170686511366857 1 0.042637437582016 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859378 chr17:4859388 synonymous SNV . 0 31 hm5C_associated_SNPs_46114 0 0 1 0 2 nucleus 1 0.500227291009117 1 0.999545417981766 hm5C_site_44833 DeepMRMD:1;iRNA_m5C:0.999545417981766 44834 chr17 4859388 4859388 1 + T C UCEC 4859382 + 4859362 4859402 41 GCCGTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGT GCCGTTGAGAAGAAGGCCTGCAACTGCCTGCTGCTGAAGGT < 41bp 1 0.414012285923029 1 0.103122055530548 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859382 chr17:4859388 synonymous SNV . 0 27 hm5C_associated_SNPs_46116 0 0 1 0 2 nucleus 1 0.500231643823918 1 0.999536712352164 hm5C_site_44834 DeepMRMD:1;iRNA_m5C:0.999536712352164 44835 chr17 4859388 4859388 1 + T C UCEC 4859385 + 4859365 4859405 41 GTTGAGAAGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAA GTTGAGAAGAAGGCCTGCAACTGCCTGCTGCTGAAGGTCAA < 41bp 1 0.69277723306817 1 0.265213936567307 experiment 0.614445533863659 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859385 chr17:4859388 synonymous SNV . 0 24 hm5C_associated_SNPs_46117 0 0 1 0 2 nucleus 1 0.500231643921314 1 0.999536712157372 hm5C_site_44835 DeepMRMD:1;iRNA_m5C:0.999536712157372 44836 chr17 4859388 4859388 1 + T C UCEC 4859392 + 4859372 4859412 41 AGAAGGCCTGCAACTGTCTGCTGCTGAAGGTCAACCAGATC AGAAGGCCTGCAACTGCCTGCTGCTGAAGGTCAACCAGATC < 41bp 1 0.357244872198484 1 0.294537276029587 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859392 chr17:4859388 synonymous SNV . 0 17 hm5C_associated_SNPs_46119 0 0 1 0 2 nucleus 1 0.500231643921094 1 0.999536712157812 hm5C_site_44836 DeepMRMD:1;iRNA_m5C:0.999536712157812 44837 chr17 4859388 4859388 1 + T C UCEC 4859403 + 4859383 4859423 41 AACTGTCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC AACTGCCTGCTGCTGAAGGTCAACCAGATCGGCTCGGTGAC < 41bp 1 0.406448967072482 1 0.269271373748779 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ENO3 ENSG00000108515 CDS Human protein_coding chr17:4859403 chr17:4859388 synonymous SNV . 0 6 hm5C_associated_SNPs_46120 0 0 1 0 2 nucleus 1 0.500231643921112 1 0.999536712157777 hm5C_site_44837 DeepMRMD:1;iRNA_m5C:0.999536712157777 44838 chr16 22337346 22337346 1 + G A UCEC 22337333 + 22337313 22337353 41 ACAGCAAGCTGGCCAACGGGCTGCCTCTCGGGCGGGCTGCG ACAGCAAGCTGGCCAACGGGCTGCCTCTCGGGCAGGCTGCG < 41bp 1 0.302279314605648 1 0.0399198234081268 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control POLR3E ENSG00000058600 CDS Human protein_coding chr16:22337333 chr16:22337346 nonsynonymous SNV 0.024 0 34 hm5C_associated_SNPs_46121 0 0 1 0 0 Ribosome 1 0.500231643921221 1 0.999536712157559 hm5C_site_44838 DeepMRMD:1;iRNA_m5C:0.999536712157559 44839 chr6 72011480 72011480 1 + A G UCEC 72011481 + 72011461 72011501 41 TGTTCATTTAAATAGCAAAACAGCTGAAGACAAAAAAGTGG TGTTCATTTAAATAGCAAAGCAGCTGAAGACAAAAAAGTGG < 41bp 1 0.405760289514977 1 0.329290151596069 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72011481 chr6:72011480 nonsynonymous SNV 0.614 0 20 hm5C_associated_SNPs_46122 0 0 1 0 0 exosome 1 0.50023164392857 1 0.999536712142859 hm5C_site_44839 DeepMRMD:1;iRNA_m5C:0.999536712142859 44840 chr19 39215148 39215148 1 + C T UCEC 39215163 + 39215143 39215183 41 CTGCGCCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC CTGCGTCGCCAGTTCGCCAGCCAGGCCAATGTTGTGGGGCC < 41bp 1 0.320326227407303 1 0.649632692337036 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39215163 chr19:39215148 synonymous SNV . 0 6 hm5C_associated_SNPs_46124 0 0 1 0 2 Nucleus 1 0.500231643921092 0.700734615325928 0.999536712157815 hm5C_site_44840 DeepMRMD:0.700734615325928;iRNA_m5C:0.999536712157815 44841 chr17 27027976 27027976 1 + C T UCEC 27027991 + 27027971 27028011 41 CCAGCCCAGCAGCCAGTGGCCACACCACTAATGACCCCTAG CCAGCTCAGCAGCCAGTGGCCACACCACTAATGACCCCTAG < 41bp 1 0.250624687371052 1 0.48588690161705 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27027991 chr17:27027976 synonymous SNV . 0 6 hm5C_associated_SNPs_46125 0 0 1 0 1 Cytosol 1 0.500231644339464 1 0.999536711321073 hm5C_site_44841 DeepMRMD:1;iRNA_m5C:0.999536711321073 44842 chr19 1041938 1041938 1 + A G UCEC 1041928 + 1041908 1041948 41 CCTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGC CCTGCTTTCCGCAGCTGACACCGGGCGAGGGGCCCGGGCGC < 41bp 1 0.608744104819684 1 0.898197889328003 experiment 0.782511790360632 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041928 chr19:1041938 nonsynonymous SNV 0.027 1 31 hm5C_associated_SNPs_46126 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921091 0.203604221343994 0.999536712157818 hm5C_site_44842 DeepMRMD:0.203604221343994;iRNA_m5C:0.999536712157818 44843 chr19 1041938 1041938 1 + A G UCEC 1041929 + 1041909 1041949 41 CTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCC CTGCTTTCCGCAGCTGACACCGGGCGAGGGGCCCGGGCGCC < 41bp 1 0.437900133520648 1 0.936896204948425 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041929 chr19:1041938 nonsynonymous SNV 0.027 1 30 hm5C_associated_SNPs_46127 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.12620759010315 0.999536712157815 hm5C_site_44843 DeepMRMD:0.12620759010315;iRNA_m5C:0.999536712157815 44844 chr19 1041938 1041938 1 + A G UCEC 1041933 + 1041913 1041953 41 TTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAG TTTCCGCAGCTGACACCGGGCGAGGGGCCCGGGCGCCTGAG < 41bp 1 0.563724175143559 1 0.888174772262573 experiment 0.872551649712881 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041933 chr19:1041938 nonsynonymous SNV 0.027 1 26 hm5C_associated_SNPs_46128 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643972492 0.223650455474854 0.999536712055015 hm5C_site_44844 DeepMRMD:0.223650455474854;iRNA_m5C:0.999536712055015 44845 chr19 1041938 1041938 1 + A G UCEC 1041940 + 1041920 1041960 41 AGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC AGCTGACACCGGGCGAGGGGCCCGGGCGCCTGAGCAACTTC < 41bp 1 0.284473123067493 1 0.4369897544384 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041940 chr19:1041938 nonsynonymous SNV 0.027 1 19 hm5C_associated_SNPs_46129 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921188 1 0.999536712157625 hm5C_site_44845 DeepMRMD:1;iRNA_m5C:0.999536712157625 44846 chr19 1041938 1041938 1 + A G UCEC 1041941 + 1041921 1041961 41 GCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA GCTGACACCGGGCGAGGGGCCCGGGCGCCTGAGCAACTTCA < 41bp 1 0.294812034733396 1 0.785524964332581 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041941 chr19:1041938 nonsynonymous SNV 0.027 1 18 hm5C_associated_SNPs_46130 0 0 0 0 1 Endoplasmic reticulum 1 0.500231656622513 0.428950071334838 0.999536686754975 hm5C_site_44846 DeepMRMD:0.428950071334838;iRNA_m5C:0.999536686754975 44847 chr19 1041938 1041938 1 + A G UCEC 1041942 + 1041922 1041962 41 CTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA CTGACACCGGGCGAGGGGCCCGGGCGCCTGAGCAACTTCAA < 41bp 1 0.391145769215714 1 0.826939940452576 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041942 chr19:1041938 nonsynonymous SNV 0.027 1 17 hm5C_associated_SNPs_46131 0 0 0 0 1 Endoplasmic reticulum 1 0.500231644129661 0.346120119094848 0.999536711740678 hm5C_site_44847 DeepMRMD:0.346120119094848;iRNA_m5C:0.999536711740678 44848 chr4 57881730 57881730 1 + T C UCEC 57881714 + 57881694 57881734 41 GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTA GAGGGAGATTCGGATCTATACGGATGCAGGCCGTATCTGTA < 41bp 1 0.643195810180705 1 0.807084798812866 experiment 0.713608379638589 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57881714 chr4:57881730 synonymous SNV . 0 37 hm5C_associated_SNPs_46132 0 0 1 0 2 Nucleus 1 0.500231643921092 0.385830402374268 0.999536712157815 hm5C_site_44848 DeepMRMD:0.385830402374268;iRNA_m5C:0.999536712157815 44849 chr17 7466577 7466577 1 + C T UCEC 7466589 + 7466569 7466609 41 CAGCCAGACGCCTCCCTGTCCCCCGACCCTCTTTTGATGCC CAGCCAGATGCCTCCCTGTCCCCCGACCCTCTTTTGATGCC < 41bp 1 0.334057571712379 1 0.0677323639392853 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SENP3 ENSG00000161956 CDS Human protein_coding chr17:7466589 chr17:7466577 nonsynonymous SNV 1.000 0 9 hm5C_associated_SNPs_46133 0 0 1 0 0 Cytosol 1 0.500231641084712 1 0.999536717830576 hm5C_site_44849 DeepMRMD:1;iRNA_m5C:0.999536717830576 44850 chr7 73731886 73731886 1 + C T UCEC 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AAGTCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA < 41bp 1 0.261325482283838 1 0.161926180124283 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731886 nonsynonymous SNV 1.000 1 4 hm5C_associated_SNPs_46134 0 0 0 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_44850 DeepMRMD:1;iRNA_m5C:0.999536712157815 44851 chr7 73731886 73731886 1 + C T UCEC 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC AGTCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC < 41bp 1 0.458614877164275 1 0.423662096261978 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731886 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_46135 0 0 0 0 1 Ribosome 1 0.500231643921581 1 0.999536712156837 hm5C_site_44851 DeepMRMD:1;iRNA_m5C:0.999536712156837 44852 chr7 73731886 73731886 1 + C T UCEC 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT GTCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT < 41bp 1 0.167319645047172 1 0.460846960544586 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731886 nonsynonymous SNV 1.000 1 2 hm5C_associated_SNPs_46136 0 0 0 0 1 Ribosome 1 0.500231643921113 1 0.999536712157775 hm5C_site_44852 DeepMRMD:1;iRNA_m5C:0.999536712157775 44853 chr7 73731886 73731886 1 + C T UCEC 73731906 + 73731886 73731926 41 CCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC TCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTC < 41bp 1 0.396533406065854 1 0.489603668451309 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731906 chr7:73731886 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_46137 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44853 DeepMRMD:1;iRNA_m5C:0.999536712157815 44854 chr2 216190004 216190004 1 + G A UCEC 216190020 + 216190000 216190040 41 AGTGGCTTCTCCAGGTGTAACTGTTGAGGAGGCTGTGGAGC AGTGACTTCTCCAGGTGTAACTGTTGAGGAGGCTGTGGAGC < 41bp 1 0.355432496085808 1 0.170648664236069 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATIC ENSG00000138363 CDS Human protein_coding chr2:216190020 chr2:216190004 nonsynonymous SNV 1.000 2 5 hm5C_associated_SNPs_46138 0 0 1 0 1 chromatin 1 0.500231644628194 1 0.999536710743612 hm5C_site_44854 DeepMRMD:1;iRNA_m5C:0.999536710743612 44855 chr20 3520913 3520913 1 + A G UCEC 3520926 + 3520906 3520946 41 GCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGG GCTACAGGGTGTAGTTGGGACCATTTATATGTTTATGATGG < 41bp 1 0.0245581616859226 1 0.15489250421524 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ATRN ENSG00000088812 CDS Human protein_coding chr20:3520926 chr20:3520913 nonsynonymous SNV 0.998 4 8 hm5C_associated_SNPs_46139 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44855 DeepMRMD:1;iRNA_m5C:0.999536712157815 44856 chr21 46900031 46900031 1 + T C UCEC 46900048 + 46900028 46900068 41 GCCTCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC GCCCCCAGGGCCCCCAGGACCCTCCTTCAGACACGACAAGC < 41bp 1 0.0539599184222563 1 0.054591178894043 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46900048 chr21:46900031 synonymous SNV . 0 4 hm5C_associated_SNPs_46140 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44856 DeepMRMD:1;iRNA_m5C:0.999536712157815 44857 chr3 43389334 43389334 1 + G A UCEC 43389320 + 43389300 43389340 41 GCTTCTCCAGGTACAGTTCACAAACGCTACCACCGGAGGAA GCTTCTCCAGGTACAGTTCACAAACGCTACCACCAGAGGAA < 41bp 1 0.36404609848515 1 0.135684221982956 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SNRK ENSG00000163788 CDS Human protein_coding chr3:43389320 chr3:43389334 nonsynonymous SNV 1.000 4 35 hm5C_associated_SNPs_46141 0 0 0 0 0 Cytosol 1 0.5002316437254 1 0.999536712549201 hm5C_site_44857 DeepMRMD:1;iRNA_m5C:0.999536712549201 44858 chr19 10789836 10789836 1 + C G UCEC 10789854 + 10789834 10789874 41 CTCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG CTGGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGG < 41bp 1 0.0834231227477826 1 0.0759552419185638 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789854 chr19:10789836 nonsynonymous SNV 0.869 4 3 hm5C_associated_SNPs_46142 0 0 1 0 2 Cytosol 1 0.500231622489454 1 0.999536755021093 hm5C_site_44858 DeepMRMD:1;iRNA_m5C:0.999536755021093 44859 chr19 10789836 10789836 1 + C G UCEC 10789855 + 10789835 10789875 41 TCGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC TGGCGTGCCCACCTGGGGTCCCCTCCGAGGCTGGGTAAGGC < 41bp 1 0.0349649937452581 1 0.173125296831131 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ILF3 ENSG00000129351 CDS Human protein_coding chr19:10789855 chr19:10789836 nonsynonymous SNV 0.869 4 2 hm5C_associated_SNPs_46143 0 0 1 0 2 Cytosol 1 0.500231643921101 1 0.999536712157797 hm5C_site_44859 DeepMRMD:1;iRNA_m5C:0.999536712157797 44860 chr9 120476518 120476518 1 + G A UCEC 120476528 + 120476508 120476548 41 CTCCATTTCAGCTCTGCCTTCACTACAGAGACTTTATTCCC CTCCATTTCAACTCTGCCTTCACTACAGAGACTTTATTCCC < 41bp 1 0.394919396087786 1 0.108440667390823 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TLR4 ENSG00000136869 CDS Human protein_coding chr9:120476528 chr9:120476518 synonymous SNV . 0 11 hm5C_associated_SNPs_46144 0 0 0 0 0 cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44860 DeepMRMD:1;iRNA_m5C:0.999536712157815 44861 chr21 37617590 37617590 1 + G A UCEC 37617607 + 37617587 37617627 41 CCCGGACAGCAGCGAGCACACCGAGTCTGCAGATACAAGCT CCCAGACAGCAGCGAGCACACCGAGTCTGCAGATACAAGCT < 41bp 1 0.469209003078619 1 0.205652952194214 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control DOPEY2 ENSG00000142197 CDS Human protein_coding chr21:37617607 chr21:37617590 synonymous SNV . 0 4 hm5C_associated_SNPs_46145 0 0 0 0 0 cytosol 1 0.500231643882602 1 0.999536712234796 hm5C_site_44861 DeepMRMD:1;iRNA_m5C:0.999536712234796 44862 chr10 72324235 72324235 1 + C G UCEC 72324236 + 72324216 72324256 41 TACCTCCACCTGGAGAAGGCCGACTCCTGGCAGAGGCCCTT TACCTCCACCTGGAGAAGGGCGACTCCTGGCAGAGGCCCTT < 41bp 1 0.161225133771313 1 0.377938866615295 experiment 1 Functional Loss 31061524;GSE122268;BS-seq with improved protocol;Spleen;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72324236 chr10:72324235 nonsynonymous SNV 0.075 1 20 hm5C_associated_SNPs_46146 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44862 DeepMRMD:1;iRNA_m5C:0.999536712157815 44863 chr17 79668142 79668142 1 + A G UCEC 79668148 + 79668128 79668168 41 CTACATCGCGGGGCAGCAGCCCATGTACCAGCAGGTGAGCC CTACATCGCGGGGCGGCAGCCCATGTACCAGCAGGTGAGCC < 41bp 1 0.210646027932448 1 0.715174078941345 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79668148 chr17:79668142 nonsynonymous SNV 0.985 2 15 hm5C_associated_SNPs_46147 0 0 1 0 2 Nucleus 1 0.500231643921092 0.56965184211731 0.999536712157815 hm5C_site_44863 DeepMRMD:0.56965184211731;iRNA_m5C:0.999536712157815 44864 chr3 43389360 43389360 1 + A G UCEC 43389379 + 43389359 43389399 41 CAGCTGCAGTAGTTCGGAGACCAGTGATGATGATTCTGAAA CGGCTGCAGTAGTTCGGAGACCAGTGATGATGATTCTGAAA < 41bp 1 0.366847113509279 1 0.191638231277466 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SNRK ENSG00000163788 CDS Human protein_coding chr3:43389379 chr3:43389360 nonsynonymous SNV 0.975 4 2 hm5C_associated_SNPs_46149 0 0 1 0 0 Cytosol 1 0.500231637277458 1 0.999536725445085 hm5C_site_44864 DeepMRMD:1;iRNA_m5C:0.999536725445085 44865 chr21 46897362 46897362 1 + G T UCEC 46897353 + 46897333 46897373 41 CTTCCTGGCTCAGATTCTGTCTCCACGTGGGACGGGAGTGT CTTCCTGGCTCAGATTCTGTCTCCACGTGTGACGGGAGTGT < 41bp 1 0.432188637537067 1 0.958520412445068 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122266;BS-seq with improved protocol;Liver;Control|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46897353 chr21:46897362 nonsynonymous SNV 0.025 2 30 hm5C_associated_SNPs_46150 0 0 1 0 2 Nucleus 1 0.500203108677624 0.0829591751098639 0.999593782644751 hm5C_site_44865 DeepMRMD:0.0829591751098639;iRNA_m5C:0.999593782644751 44866 chr19 13054652 13054652 1 + G T UCEC 13054643 + 13054623 13054663 41 GACAAGGAGGATGATGAGGACAAAGATGAGGATGAGGAGGA GACAAGGAGGATGATGAGGACAAAGATGATGATGAGGAGGA < 41bp 1 0.534478396820135 1 0.40686497092247 experiment 0.931043206359729 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout CALR ENSG00000179218 CDS Human protein_coding chr19:13054643 chr19:13054652 nonsynonymous SNV 0.222 0 30 hm5C_associated_SNPs_46151 0 0 1 0 0 Ribosome 1 0.500231643856563 1 0.999536712286874 hm5C_site_44866 DeepMRMD:1;iRNA_m5C:0.999536712286874 44867 chr16 697459 697459 1 + G A UCEC 697463 + 697443 697483 41 GTGTGAATGGCCGGCGGGCCCCCTCCACGTCCCCATCCTTC GTGTGAATGGCCGGCGAGCCCCCTCCACGTCCCCATCCTTC < 41bp 1 0.151075399504603 1 0.119146078824997 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697463 chr16:697459 synonymous SNV . 0 17 hm5C_associated_SNPs_46152 0 0 1 0 1 Cytosol 1 0.500231642832519 1 0.999536714334962 hm5C_site_44867 DeepMRMD:1;iRNA_m5C:0.999536714334962 44868 chr19 36128137 36128137 1 + C T UCEC 36128142 + 36128122 36128162 41 GCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCCAAGGTGAT GCCTTCAGCCGCTTCTCATCCTTCCTTAAGGCCAAGGTGAT < 41bp 1 0.194566997481515 1 0.418761104345322 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128142 chr19:36128137 nonsynonymous SNV 1.000 3 16 hm5C_associated_SNPs_46153 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44868 DeepMRMD:1;iRNA_m5C:0.999536712157815 44869 chr15 39876553 39876553 1 + A G UCEC 39876541 + 39876521 39876561 41 GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTATCACAACG GGCCAATGAGCTGAGGCGGCCTCCCCTATGCTGTCACAACG < 41bp 1 0.179570611832404 1 0.319289863109589 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876541 chr15:39876553 nonsynonymous SNV 0.994 1 33 hm5C_associated_SNPs_46154 0 0 1 0 2 cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_44869 DeepMRMD:1;iRNA_m5C:0.999536712157812 44870 chr14 64990099 64990099 1 + A G UCEC 64990092 + 64990072 64990112 41 GAGAGCGTCAGTTGCGACTGCACAATGATATGCACAAAGGC GAGAGCGTCAGTTGCGACTGCACAATGGTATGCACAAAGGC < 41bp 1 0.676987772192 1 0.675002694129944 experiment 0.646024455616 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64990092 chr14:64990099 nonsynonymous SNV 1.000 2 28 hm5C_associated_SNPs_46155 0 0 0 0 1 Cytosol 1 0.5002689122242 0.649994611740112 0.9994621755516 hm5C_site_44870 DeepMRMD:0.649994611740112;iRNA_m5C:0.9994621755516 44871 chr4 144442689 144442689 1 + G A UCEC 144442679 + 144442659 144442699 41 TCAGAAGACTCCAACTTCACCTTTGAAGATGAAACCAGGGC TCAGAAGACTCCAACTTCACCTTTGAAGATAAAACCAGGGC < 41bp 1 0.142531759980697 1 0.0569127202033997 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144442679 chr4:144442689 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_46157 0 0 1 0 1 Nucleus 1 0.500231654299444 1 0.999536691401112 hm5C_site_44871 DeepMRMD:1;iRNA_m5C:0.999536691401112 44872 chrX 48564950 48564950 1 + G T UCEC 48564940 + 48564920 48564960 41 TCATAGACAACCTTGACGAGCGGCTGCCCCGCATCGCTTTC TCATAGACAACCTTGACGAGCGGCTGCCCCTCATCGCTTTC < 41bp 1 0.369826935201929 1 0.153729259967804 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564940 chrX:48564950 nonsynonymous SNV 0.163 3 31 hm5C_associated_SNPs_46158 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44872 DeepMRMD:1;iRNA_m5C:0.999536712157815 44873 chr3 52233369 52233369 1 + G T UCEC 52233380 + 52233360 52233400 41 AAGATGATGGAAGTTGGGGCCAAGCCAGCCCCTCGGGCATT AAGATGATGTAAGTTGGGGCCAAGCCAGCCCCTCGGGCATT < 41bp 1 0.437009927609901 1 0.270919144153595 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233380 chr3:52233369 stopgain 1.000 1 10 hm5C_associated_SNPs_46159 0 0 1 0 0 Cytosol 1 0.500231644431422 1 0.999536711137156 hm5C_site_44873 DeepMRMD:1;iRNA_m5C:0.999536711137156 44874 chr2 99985924 99985924 1 + C T UCEC 99985908 + 99985888 99985928 41 AAGTTATGGAACAAGGAGTACCAGAAAAGGAAGAGACACCA AAGTTATGGAACAAGGAGTACCAGAAAAGGAAGAGATACCA < 41bp 1 0.512323529893926 1 0.209429919719696 experiment 0.975352940212147 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF5B ENSG00000158417 CDS Human protein_coding chr2:99985908 chr2:99985924 nonsynonymous SNV 0.997 0 37 hm5C_associated_SNPs_46160 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44874 DeepMRMD:1;iRNA_m5C:0.999536712157815 44875 chr8 56699489 56699489 1 + T C UCEC 56699490 + 56699470 56699510 41 CCTGTACAAGTCATGATGGTCATCAACAGCTAAGTGAAGTT CCTGTACAAGTCATGATGGCCATCAACAGCTAAGTGAAGTT < 41bp 1 0.398048078450762 1 0.339741617441177 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TGS1 ENSG00000137574 CDS Human protein_coding chr8:56699490 chr8:56699489 synonymous SNV . 0 20 hm5C_associated_SNPs_46161 0 0 1 0 0 Nucleus 1 0.500247930200333 1 0.999504139599334 hm5C_site_44875 DeepMRMD:1;iRNA_m5C:0.999504139599334 44876 chr15 81221511 81221511 1 + G T UCEC 81221501 + 81221481 81221521 41 TTGGACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGT TTGGACCATAGCGGAAGGACCCTCCCTATATGCCAGTAGGT < 41bp 1 0.0134894098352 1 0.0606480538845062 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221501 chr15:81221511 nonsynonymous SNV 0.990 3 31 hm5C_associated_SNPs_46162 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157814 hm5C_site_44876 DeepMRMD:1;iRNA_m5C:0.999536712157814 44877 chr15 81221511 81221511 1 + G T UCEC 81221505 + 81221485 81221525 41 ACCATAGCGGAAGGACCCTCCCTATAGGCCAGTAGGTTTGC ACCATAGCGGAAGGACCCTCCCTATATGCCAGTAGGTTTGC < 41bp 1 0.0319974503384934 1 0.28072589635849 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221505 chr15:81221511 nonsynonymous SNV 0.990 3 27 hm5C_associated_SNPs_46163 0 0 1 0 1 Nucleus 1 0.500231643921241 1 0.999536712157518 hm5C_site_44877 DeepMRMD:1;iRNA_m5C:0.999536712157518 44878 chr20 62904594 62904594 1 + C A UCEC 62904609 + 62904589 62904629 41 GCAGCCTCCAGGACTTGGCTCGCATCGCCATCCGGGGCACC GCAGCATCCAGGACTTGGCTCGCATCGCCATCCGGGGCACC < 41bp 1 0.398631438528777 1 0.0248070955276489 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62904609 chr20:62904594 nonsynonymous SNV 0.886 4 6 hm5C_associated_SNPs_46164 0 0 1 0 1 Ribosome 1 0.500231643922018 1 0.999536712155964 hm5C_site_44878 DeepMRMD:1;iRNA_m5C:0.999536712155964 44879 chr17 694918 694918 1 + G A UCEC 694913 + 694893 694933 41 CGGGTCTATGTGGCTGACAACTGTGGCCTTTATGCCCAGGC CGGGTCTATGTGGCTGACAACTGTGACCTTTATGCCCAGGC < 41bp 1 0.324139161537088 1 0.199064761400223 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control MRM3 ENSG00000171861 CDS Human protein_coding chr17:694913 chr17:694918 nonsynonymous SNV 0.796 0 26 hm5C_associated_SNPs_46165 0 0 1 0 0 chromatin 1 0.500231872236202 1 0.999536255527596 hm5C_site_44879 DeepMRMD:1;iRNA_m5C:0.999536255527596 44880 chr5 150028786 150028786 1 + G A UCEC 150028797 + 150028777 150028817 41 AACTTCACTGCACCCCCCACCTACACTGAGACCTTGTCCAC AACTTCACTACACCCCCCACCTACACTGAGACCTTGTCCAC < 41bp 1 0.490348797090841 1 0.779803872108459 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control SYNPO ENSG00000171992 CDS Human protein_coding chr5:150028797 chr5:150028786 nonsynonymous SNV 0.417 1 10 hm5C_associated_SNPs_46166 0 0 1 0 0 Endoplasmic reticulum 1 0.50023164377831 0.440392255783082 0.99953671244338 hm5C_site_44880 DeepMRMD:0.440392255783082;iRNA_m5C:0.99953671244338 44881 chr1 117638858 117638858 1 + C A UCEC 117638864 + 117638844 117638884 41 GCCACCATCGATGGCTCTGTCAATCCCAAGCAGAGAATGGA GCCACCATCGATGGATCTGTCAATCCCAAGCAGAGAATGGA < 41bp 1 0.122863185623703 1 0.201146602630615 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117638864 chr1:117638858 synonymous SNV . 0 15 hm5C_associated_SNPs_46168 0 0 1 0 1 Nucleus 1 0.500242145585233 1 0.999515708829535 hm5C_site_44881 DeepMRMD:1;iRNA_m5C:0.999515708829535 44882 chr1 117638858 117638858 1 + C A UCEC 117638868 + 117638848 117638888 41 CCATCGATGGCTCTGTCAATCCCAAGCAGAGAATGGACTTG CCATCGATGGATCTGTCAATCCCAAGCAGAGAATGGACTTG < 41bp 1 0.676367325271607 1 0.169641822576523 experiment 0.647265349456785 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTF2 ENSG00000116830 CDS Human protein_coding chr1:117638868 chr1:117638858 synonymous SNV . 0 11 hm5C_associated_SNPs_46169 0 0 1 0 1 Nucleus 1 0.50023170389606 1 0.99953659220788 hm5C_site_44882 DeepMRMD:1;iRNA_m5C:0.99953659220788 44883 chr2 233697633 233697633 1 + C T UCEC 233697652 + 233697632 233697672 41 GCTGCGGATGGAAGAGGAGGCAGCCAGACTCCGGCATGAGG GTTGCGGATGGAAGAGGAGGCAGCCAGACTCCGGCATGAGG < 41bp 1 0.297932872510288 1 0.304704129695892 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233697652 chr2:233697633 synonymous SNV . 0 2 hm5C_associated_SNPs_46170 0 0 1 0 1 Nucleus 1 0.500231643916257 1 0.999536712167487 hm5C_site_44883 DeepMRMD:1;iRNA_m5C:0.999536712167487 44884 chr17 7814173 7814173 1 + G A UCEC 7814192 + 7814172 7814212 41 CGCCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGGCC CACCGGGTCCCTACGCTACACCTCCGGGGTACGGGGCGGCC < 41bp 1 0.0959590763844673 1 0.0334808826446533 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CHD3 ENSG00000170004 CDS Human protein_coding chr17:7814192 chr17:7814173 nonsynonymous SNV 0.998 0 2 hm5C_associated_SNPs_46171 0 0 1 0 1 Cytosol 1 0.500231643921138 1 0.999536712157724 hm5C_site_44884 DeepMRMD:1;iRNA_m5C:0.999536712157724 44885 chr4 517562 517562 1 + C T UCEC 517553 + 517533 517573 41 GACAAAGGCCACGGAAGCCCCTCTACCTCCGAAGTGCTCAG GACAAAGGCCACGGAAGCCCCTCTACCTCTGAAGTGCTCAG < 41bp 1 0.611005367557543 1 0.800771474838257 experiment 0.777989264884914 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122260;BS-seq with improved protocol;HEK293T;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout|31061524;GSE122269;BS-seq with improved protocol;Testis;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PIGG ENSG00000174227 CDS Human protein_coding chr4:517553 chr4:517562 synonymous SNV . 0 30 hm5C_associated_SNPs_46172 0 0 1 0 0 Nucleus 1 0.500231643921013 0.398457050323486 0.999536712157974 hm5C_site_44885 DeepMRMD:0.398457050323486;iRNA_m5C:0.999536712157974 44886 chr9 35792593 35792593 1 + A G UCEC 35792598 + 35792578 35792618 41 GGGCACTGCCCGTGGACCTGCGGTTTGTCAGCTCCGAACTG GGGCACTGCCCGTGGGCCTGCGGTTTGTCAGCTCCGAACTG < 41bp 1 0.583927059856043 1 0.502557396888733 experiment 0.832145880287914 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NPR2 ENSG00000159899 CDS Human protein_coding chr9:35792598 chr9:35792593 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_46173 0 0 1 0 0 chromatin 1 0.500231643921092 0.994885206222534 0.999536712157815 hm5C_site_44886 DeepMRMD:0.994885206222534;iRNA_m5C:0.999536712157815 44887 chr1 180165729 180165729 1 + C T UCEC 180165711 + 180165691 180165731 41 CCCCCACAAACACCACCCCACATGTGCCGGCTGAGGGACCT CCCCCACAAACACCACCCCACATGTGCCGGCTGAGGGATCT < 41bp 1 0.212490423220342 1 0.0132678151130676 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180165711 chr1:180165729 nonsynonymous SNV 0.001 0 39 hm5C_associated_SNPs_46174 0 0 1 0 0 Ribosome 1 0.500231643711071 1 0.999536712577858 hm5C_site_44887 DeepMRMD:1;iRNA_m5C:0.999536712577858 44888 chr11 66249810 66249810 1 + G A UCEC 66249791 + 66249771 66249811 41 GCCTACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGGC GCCTACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGAC < 41bp 1 0.563560853676143 1 0.196522355079651 experiment 0.872878292647714 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249791 chr11:66249810 nonsynonymous SNV 0.997 2 40 hm5C_associated_SNPs_46175 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44888 DeepMRMD:1;iRNA_m5C:0.999536712157815 44889 chr11 66249810 66249810 1 + G A UCEC 66249793 + 66249773 66249813 41 CTACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGGCTG CTACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGACTG < 41bp 1 0.349448054551234 1 0.0616561472415924 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249793 chr11:66249810 nonsynonymous SNV 0.997 2 38 hm5C_associated_SNPs_46176 0 0 1 0 0 Nucleus 1 0.50023164391993 1 0.99953671216014 hm5C_site_44889 DeepMRMD:1;iRNA_m5C:0.99953671216014 44890 chr11 66249810 66249810 1 + G A UCEC 66249794 + 66249774 66249814 41 TACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGGCTGT TACCACCTGTCCCGTGCCGCCTGGTACGGAGGCCTGACTGT < 41bp 1 0.675389758752622 1 0.290538221597672 experiment 0.649220482494756 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249794 chr11:66249810 nonsynonymous SNV 0.997 2 37 hm5C_associated_SNPs_46177 0 0 1 0 0 Nucleus 1 0.500231643844609 1 0.999536712310782 hm5C_site_44890 DeepMRMD:1;iRNA_m5C:0.999536712310782 44891 chr9 71851980 71851980 1 + C A UCEC 71851967 + 71851947 71851987 41 AGGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTCGGGAAGA AGGTCTGGGGTGAAGAAGAACCTGAGGAAAAGTAGGGAAGA < 41bp 1 0.406090835946098 1 0.200028032064438 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TJP2 ENSG00000119139 CDS Human protein_coding chr9:71851967 chr9:71851980 synonymous SNV . 0 34 hm5C_associated_SNPs_46178 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44891 DeepMRMD:1;iRNA_m5C:0.999536712157815 44892 chr14 24909642 24909642 1 + G T UCEC 24909627 - 24909607 24909647 41 TTCGCCTGGGCCTGGGGGGCCCCATCGGCTCAGGCCACCAA TTCGCATGGGCCTGGGGGGCCCCATCGGCTCAGGCCACCAA < 41bp 1 0.350520900546347 1 0.182542055845261 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control SDR39U1 ENSG00000100445 CDS Human protein_coding chr14:24909627 chr14:24909642 nonsynonymous SNV 0.998 3 6 hm5C_associated_SNPs_46180 0 0 1 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_44892 DeepMRMD:1;iRNA_m5C:0.999536712157815 44893 chr1 32042939 32042939 1 + C A UCEC 32042959 + 32042939 32042979 41 CTGCCCTACCTGGGCGCCATCTGTTACTGTGACCTCTTCTG ATGCCCTACCTGGGCGCCATCTGTTACTGTGACCTCTTCTG < 41bp 1 0.40290541004216 1 0.135599762201309 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32042959 chr1:32042939 nonsynonymous SNV 0.998 2 1 hm5C_associated_SNPs_46181 0 0 0 0 0 Ribosome 1 0.500231643922057 1 0.999536712155886 hm5C_site_44893 DeepMRMD:1;iRNA_m5C:0.999536712155886 44894 chr15 41192186 41192186 1 + C T UCEC 41192201 + 41192181 41192221 41 TACCACGTGCAACGGGAGGCCCGAGATGTCTGGCGCACCTA TACCATGTGCAACGGGAGGCCCGAGATGTCTGGCGCACCTA < 41bp 1 0.353165609694373 1 0.447974294424057 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41192201 chr15:41192186 synonymous SNV . 0 6 hm5C_associated_SNPs_46182 0 0 1 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_44894 DeepMRMD:1;iRNA_m5C:0.999536712157815 44895 chr11 210617 210617 1 + G A UCEC 210603 + 210583 210623 41 CTTTACCGACACCTGGGGACCCTTCTCCGGCACTGTGTGAT CTTTACCGACACCTGGGGACCCTTCTCCGGCACTATGTGAT < 41bp 1 0.0119402413711057 1 0.064977765083313 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:210603 chr11:210617 nonsynonymous SNV 0.864 4 35 hm5C_associated_SNPs_46184 0 0 1 0 2 Ribosome 1 0.500231643984086 1 0.999536712031827 hm5C_site_44895 DeepMRMD:1;iRNA_m5C:0.999536712031827 44896 chr6 26045898 26045898 1 + G A UCEC 26045888 + 26045868 26045908 41 AGGACTTCAAAACCGACCTGCGTTTCCAGAGCTCTGCGGTG AGGACTTCAAAACCGACCTGCGTTTCCAGAACTCTGCGGTG < 41bp 1 0.0659506856396545 1 0.0893457531929016 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H3C ENSG00000196532 CDS Human other chr6:26045888 chr6:26045898 nonsynonymous SNV 0.867 0 31 hm5C_associated_SNPs_46185 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44896 DeepMRMD:1;iRNA_m5C:0.999536712157815 44897 chr2 27900707 27900707 1 + G T UCEC 27900703 + 27900683 27900723 41 TGTCCCGGAAGAAACTTCACCTGAGAACTTTTGAACTGAGG TGTCCCGGAAGAAACTTCACCTGATAACTTTTGAACTGAGG < 41bp 1 0.142343719368489 1 0.325240135192871 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900703 chr2:27900707 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_46186 0 0 1 0 1 nucleoplasm 1 0.500231643932008 1 0.999536712135983 hm5C_site_44897 DeepMRMD:1;iRNA_m5C:0.999536712135983 44898 chr6 44274727 44274727 1 + G A UCEC 44274726 - 44274706 44274746 41 CGTCGAGCTGTGCGTTTCTCCATGGAGATCTTAAAGGCACC CGTCGAGCTGTGCGTTTCTTCATGGAGATCTTAAAGGCACC < 41bp 1 0.58421961217042 1 0.748215079307556 experiment 0.83156077565916 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AARS2 ENSG00000124608;ENSG00000178233;ENSG00000272442 CDS Human other chr6:44274726 chr6:44274727 stopgain 0.135 2 20 hm5C_associated_SNPs_46187 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921092 0.503569841384888 0.999536712157815 hm5C_site_44898 DeepMRMD:0.503569841384888;iRNA_m5C:0.999536712157815 44899 chr11 71209484 71209484 1 + G T UCEC 71209490 + 71209470 71209510 41 GCGTACCACGCCGAGAACTACAGCCCTGAGGACAACAGGTT GCGTACCACGCCGATAACTACAGCCCTGAGGACAACAGGTT < 41bp 1 0.197770189371139 1 0.476281434297562 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209490 chr11:71209484 nonsynonymous SNV 0.336 2 15 hm5C_associated_SNPs_46188 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44899 DeepMRMD:1;iRNA_m5C:0.999536712157815 44900 chr19 10577728 10577728 1 + C T UCEC 10577733 + 10577713 10577753 41 GAGGAGTCAAGGGGGCCAGGCCACCCACCCCTGCCTGACAA GAGGAGTCAAGGGGGTCAGGCCACCCACCCCTGCCTGACAA < 41bp 1 0.103546674501113 1 0.315853416919708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PDE4A ENSG00000065989 CDS Human protein_coding chr19:10577733 chr19:10577728 nonsynonymous SNV 0.011 1 16 hm5C_associated_SNPs_46189 0 0 0 0 0 chromatin 1 0.500231643915269 1 0.999536712169461 hm5C_site_44900 DeepMRMD:1;iRNA_m5C:0.999536712169461 44901 chr19 10394229 10394229 1 + G A UCEC 10394220 + 10394200 10394240 41 GCCAGTGGGCAAGAACCTTACCCTACGCTGCCAGGTGGAGG GCCAGTGGGCAAGAACCTTACCCTACGCTACCAGGTGGAGG < 41bp 1 0.384731562523761 1 0.0598515272140503 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10394220 chr19:10394229 nonsynonymous SNV 0.765 4 30 hm5C_associated_SNPs_46190 0 0 1 0 1 Nucleus 1 0.500231643921096 1 0.999536712157808 hm5C_site_44901 DeepMRMD:1;iRNA_m5C:0.999536712157808 44902 chr17 34147398 34147398 1 + T C UCEC 34147392 + 34147372 34147412 41 AGCAGAGCTCATATAGCCAGCAACCATATAATAACCAGGGA AGCAGAGCTCATATAGCCAGCAACCACATAATAACCAGGGA < 41bp 1 0.150339591235523 1 0.412758648395538 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TAF15 ENSG00000172660 CDS Human other chr17:34147392 chr17:34147398 nonsynonymous SNV 0.984 3 27 hm5C_associated_SNPs_46191 0 0 1 0 2 Cytosol 1 0.500231643921143 1 0.999536712157713 hm5C_site_44902 DeepMRMD:1;iRNA_m5C:0.999536712157713 44903 chr21 47805871 47805871 1 + C T UCEC 47805872 + 47805852 47805892 41 CTCCTCTCCATGCTCAAGGCCGACGTCAACCTGTCCCACAG CTCCTCTCCATGCTCAAGGTCGACGTCAACCTGTCCCACAG < 41bp 1 0.359934411541022 1 0.245558530092239 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNT ENSG00000160299 CDS Human protein_coding chr21:47805872 chr21:47805871 nonsynonymous SNV 0.006 2 20 hm5C_associated_SNPs_46192 0 0 0 0 1 Exosome 1 0.500228036826259 1 0.999543926347483 hm5C_site_44903 DeepMRMD:1;iRNA_m5C:0.999543926347483 44904 chr10 101715515 101715515 1 + T G UCEC 101715533 - 101715513 101715553 41 GAGAAGAGCTTGGCAGGGCCCGGCACAGAGCCAGATAAAAT GAGAAGAGCTTGGCAGGGCCCGGCACAGAGCCAGATAACAT < 41bp 1 0.634968376590099 1 0.755761444568634 experiment 0.730063246819803 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DNMBP ENSG00000107554 CDS Human protein_coding chr10:101715533 chr10:101715515 nonsynonymous SNV 0.256 1 39 hm5C_associated_SNPs_46193 0 0 0 0 0 Nucleus 1 0.500231599607552 0.488477110862732 0.999536800784896 hm5C_site_44904 DeepMRMD:0.488477110862732;iRNA_m5C:0.999536800784896 44905 chr19 12036061 12036061 1 + C T UCEC 12036063 + 12036043 12036083 41 CAGGAGCTGTAGAGAGGACCCCGGTACATCTGAAAGCCGGG CAGGAGCTGTAGAGAGGATCCCGGTACATCTGAAAGCCGGG < 41bp 1 0.553731649663116 1 0.377058327198029 experiment 0.892536700673768 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZNF700 ENSG00000196757;ENSG00000197054;ENSG00000267179 CDS Human other chr19:12036063 chr19:12036061 synonymous SNV . 0 19 hm5C_associated_SNPs_46194 0 0 1 0 1 chromatin 1 0.50023171381584 1 0.99953657236832 hm5C_site_44905 DeepMRMD:1;iRNA_m5C:0.99953657236832 44906 chr1 249212376 249212376 1 + A G UCEC 249212364 + 249212344 249212384 41 GCCTGTGTGTATCTGGAGAGCAATGCTGACACAACATCTCA GCCTGTGTGTATCTGGAGAGCAATGCTGACACGACATCTCA < 41bp 1 0.447803489303062 1 0.0870522260665894 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212364 chr1:249212376 synonymous SNV . 0 33 hm5C_associated_SNPs_46196 0 0 1 0 0 Cytosol 1 0.500231646960135 1 0.99953670607973 hm5C_site_44906 DeepMRMD:1;iRNA_m5C:0.99953670607973 44907 chr1 64095701 64095701 1 + C T UCEC 64095685 + 64095665 64095705 41 TGAAGAATATGCAGTTTGCCCTGACCTGAAAGTAGACCTTG TGAAGAATATGCAGTTTGCCCTGACCTGAAAGTAGATCTTG < 41bp 1 0.226575005622665 1 0.0332112312316895 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PGM1 ENSG00000079739 CDS Human protein_coding chr1:64095685 chr1:64095701 synonymous SNV . 0 37 hm5C_associated_SNPs_46197 0 0 1 0 1 Ribosome 1 0.500231623905358 1 0.999536752189284 hm5C_site_44907 DeepMRMD:1;iRNA_m5C:0.999536752189284 44908 chr6 155154510 155154510 1 + C T UCEC 155154525 + 155154505 155154545 41 AAGCACAGAAACTGAGGGGACATAATCATCACTCAGTAGGT AAGCATAGAAACTGAGGGGACATAATCATCACTCAGTAGGT < 41bp 1 0.193069292609416 1 0.162731647491455 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155154525 chr6:155154510 nonsynonymous SNV 1.000 3 6 hm5C_associated_SNPs_46198 0 0 1 0 1 Nucleus 1 0.500231632066149 1 0.999536735867702 hm5C_site_44908 DeepMRMD:1;iRNA_m5C:0.999536735867702 44909 chr10 71712682 71712682 1 + G A UCEC 71712688 + 71712668 71712708 41 CCTAAAGGGGATAAGGGAGACCAAGGAGCGCCTGGATTAGA CCTAAAGGGGATAAAGGAGACCAAGGAGCGCCTGGATTAGA < 41bp 1 0.192898065035018 1 0.206167548894882 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71712688 chr10:71712682 synonymous SNV . 0 15 hm5C_associated_SNPs_46199 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44909 DeepMRMD:1;iRNA_m5C:0.999536712157815 44910 chrX 114856647 114856647 1 + G T UCEC 114856664 + 114856644 114856684 41 AGAGAAATTATTCAGAAACTCATGCTGGATGGTGACAGGAA AGATAAATTATTCAGAAACTCATGCTGGATGGTGACAGGAA < 41bp 1 0.262197131177343 1 0.256947785615921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856664 chrX:114856647 stopgain 1.000 1 4 hm5C_associated_SNPs_46200 0 0 1 0 2 Nucleus 1 0.500231666784324 1 0.999536666431353 hm5C_site_44910 DeepMRMD:1;iRNA_m5C:0.999536666431353 44911 chr21 42629179 42629179 1 + C T UCEC 42629163 + 42629143 42629183 41 TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCACGGTG TTTCCCCATCCACAAATGCGCTGGTGATCGGTGCCATGGTG < 41bp 1 0.501480973166727 1 0.113743931055069 experiment 0.997038053666545 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control BACE2 ENSG00000182240 CDS Human protein_coding chr21:42629163 chr21:42629179 nonsynonymous SNV 0.598 4 37 hm5C_associated_SNPs_46201 0 0 1 0 2 Ribosome 1 0.500231644988214 1 0.999536710023572 hm5C_site_44911 DeepMRMD:1;iRNA_m5C:0.999536710023572 44912 chr6 7572159 7572159 1 + A C UCEC 7572161 + 7572141 7572181 41 CCAACAGAGAAAATGACAAGCAAGAAACATGGATGCTGATG CCAACAGAGAAAATGACACGCAAGAAACATGGATGCTGATG < 41bp 1 0.476790828449399 1 0.734280943870544 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572161 chr6:7572159 nonsynonymous SNV 1.000 4 19 hm5C_associated_SNPs_46202 0 0 1 0 1 Nucleus 1 0.500231643921098 0.531438112258912 0.999536712157803 hm5C_site_44912 DeepMRMD:0.531438112258912;iRNA_m5C:0.999536712157803 44913 chr6 7572159 7572159 1 + A C UCEC 7572176 + 7572156 7572196 41 ACAAGCAAGAAACATGGATGCTGATGGAGCTGCAGAAGATT ACACGCAAGAAACATGGATGCTGATGGAGCTGCAGAAGATT < 41bp 1 0.204000319701565 1 0.0756571888923645 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DSP ENSG00000096696 CDS Human protein_coding chr6:7572176 chr6:7572159 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_46203 0 0 1 0 1 Nucleus 1 0.500231643833132 1 0.999536712333737 hm5C_site_44913 DeepMRMD:1;iRNA_m5C:0.999536712333737 44914 chr19 10370383 10370383 1 + A G UCEC 10370393 + 10370373 10370413 41 CTCTGGCAGGACTCACGTTACAGACCCCTCTACCCCTTCAG CTCTGGCAGGGCTCACGTTACAGACCCCTCTACCCCTTCAG < 41bp 1 0.533851933953516 1 0.426299393177032 experiment 0.932296132092969 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10370393 chr19:10370383 nonsynonymous SNV 0.807 1 11 hm5C_associated_SNPs_46204 0 0 1 0 1 Cytosol 1 0.500231643921079 1 0.999536712157842 hm5C_site_44914 DeepMRMD:1;iRNA_m5C:0.999536712157842 44915 chr2 96686970 96686970 1 + C A UCEC 96686979 + 96686959 96686999 41 GACCTGATAGCCTGGGTGTCCCAGTGAGTGACAGGGGCTAT GACCTGATAGCATGGGTGTCCCAGTGAGTGACAGGGGCTAT < 41bp 1 0.339604799546162 1 0.285600602626801 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FAHD2CP ENSG00000231584 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96686979 chr2:96686970 . . 0 12 hm5C_associated_SNPs_46205 0 0 1 1 2 unknown 1 0.500229666511279 1 0.999540666977441 hm5C_site_44915 DeepMRMD:1;iRNA_m5C:0.999540666977441 44916 chrX 47030523 47030523 1 + G A UCEC 47030525 + 47030505 47030545 41 CCAGGCTTCCCCCGAGACGGCGACTATCGGGACCAGGACTA CCAGGCTTCCCCCGAGACAGCGACTATCGGGACCAGGACTA < 41bp 1 0.598361488119659 1 0.167837381362915 experiment 0.803277023760683 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030525 chrX:47030523 nonsynonymous SNV 1.000 3 19 hm5C_associated_SNPs_46206 0 0 1 0 2 Ribosome 1 0.500231643922433 1 0.999536712155134 hm5C_site_44916 DeepMRMD:1;iRNA_m5C:0.999536712155134 44917 chr19 46878973 46878973 1 + G A UCEC 46878977 + 46878957 46878997 41 GGCGACGAGCACAAGCGCTCCGTGGTGGACTCGCTGGACAT GGCGACGAGCACAAGCACTCCGTGGTGGACTCGCTGGACAT < 41bp 1 0.579577721488026 1 0.799529910087585 experiment 0.840844557023948 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PPP5C ENSG00000011485 CDS Human protein_coding chr19:46878977 chr19:46878973 nonsynonymous SNV 0.506 1 17 hm5C_associated_SNPs_46207 0 0 1 0 1 Ribosome 1 0.500231643963274 0.40094017982483 0.999536712073453 hm5C_site_44917 DeepMRMD:0.40094017982483;iRNA_m5C:0.999536712073453 44918 chr2 235943686 235943686 1 + C A UCEC 235943692 + 235943672 235943712 41 CCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACC CCAACTCCAATGGCATCCCTCGCTGCAAGTCAGAGGGGACC < 41bp 1 0.225082386578645 1 0.12140753865242 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235943692 chr2:235943686 nonsynonymous SNV 0.810 4 15 hm5C_associated_SNPs_46208 0 0 1 0 2 cytosol 1 0.50023164395732 1 0.999536712085359 hm5C_site_44918 DeepMRMD:1;iRNA_m5C:0.999536712085359 44919 chr14 100563946 100563946 1 + C A UCEC 100563942 + 100563922 100563962 41 AAGTAAAGAAGAGGCAACCACGTTCTCCAATGCAATGCTGT AAGTAAAGAAGAGGCAACCACGTTATCCAATGCAATGCTGT < 41bp 1 0.142283155965601 1 0.145008951425552 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient EVL ENSG00000196405 CDS Human protein_coding chr14:100563942 chr14:100563946 nonsynonymous SNV 0.977 5 25 hm5C_associated_SNPs_46210 0 0 0 0 1 chromatin 1 0.500231643901126 1 0.999536712197747 hm5C_site_44919 DeepMRMD:1;iRNA_m5C:0.999536712197747 44920 chr8 100182349 100182349 1 + G A UCEC 100182330 + 100182310 100182350 41 GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAGC GATCTTACTGCTTACCTGTACCAGTTATTCCCTCTTTCAAC < 41bp 1 0.0872746616907182 1 0.117825835943222 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control VPS13B ENSG00000132549 CDS Human protein_coding chr8:100182330 chr8:100182349 nonsynonymous SNV 0.999 3 40 hm5C_associated_SNPs_46211 0 0 1 0 2 Nucleus 1 0.500231644634332 1 0.999536710731336 hm5C_site_44920 DeepMRMD:1;iRNA_m5C:0.999536710731336 44921 chr2 200824514 200824514 1 + C A UCEC 200824505 + 200824485 200824525 41 TGCATTGAAAGAAAAGGTTACTTCACTACCTGACAACCATA TGCATTGAAAGAAAAGGTTACTTCACTACATGACAACCATA < 41bp 1 0.244363223742361 1 0.0672642588615417 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824505 chr2:200824514 nonsynonymous SNV 0.993 2 30 hm5C_associated_SNPs_46212 0 0 1 0 2 unknown 1 0.500232426534028 1 0.999535146931944 hm5C_site_44921 DeepMRMD:1;iRNA_m5C:0.999535146931944 44922 chr9 100773633 100773633 1 + G A UCEC 100773650 + 100773630 100773670 41 GATGTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGA GATATAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGA < 41bp 1 0.695990219015885 1 0.475627332925797 experiment 0.608019561968231 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773650 chr9:100773633 nonsynonymous SNV 0.999 1 4 hm5C_associated_SNPs_46213 0 0 1 0 2 Cytosol 1 0.500231643935976 1 0.999536712128049 hm5C_site_44922 DeepMRMD:1;iRNA_m5C:0.999536712128049 44923 chr9 100773633 100773633 1 + G A UCEC 100773653 + 100773633 100773673 41 GTAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT ATAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGT < 41bp 1 0.430300607443284 1 0.379448115825653 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773653 chr9:100773633 nonsynonymous SNV 0.999 1 1 hm5C_associated_SNPs_46214 0 0 1 0 2 Cytosol 1 0.5002316439211 1 0.999536712157799 hm5C_site_44923 DeepMRMD:1;iRNA_m5C:0.999536712157799 44924 chr7 157000246 157000246 1 + G T UCEC 157000240 + 157000220 157000260 41 ATAACGAATTCTTCGGTGATCCCATAGAAGGTAAGGATTTT ATAACGAATTCTTCGGTGATCCCATATAAGGTAAGGATTTT < 41bp 1 0.0515850423829563 1 0.0774242579936981 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control UBE3C ENSG00000009335 CDS Human protein_coding chr7:157000240 chr7:157000246 stopgain 1.000 1 27 hm5C_associated_SNPs_46215 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44924 DeepMRMD:1;iRNA_m5C:0.999536712157815 44925 chr2 45879525 45879525 1 + G A UCEC 45879512 + 45879492 45879532 41 CACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTG CACGATGCCCCCATAGGCTACGACGACTTCGTGACCAACTG < 41bp 1 0.268508666514157 1 0.169610321521759 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PRKCE ENSG00000171132 CDS Human protein_coding chr2:45879512 chr2:45879525 nonsynonymous SNV 1.000 4 34 hm5C_associated_SNPs_46216 0 0 1 0 1 chromatin 1 0.500231643920711 1 0.999536712158578 hm5C_site_44925 DeepMRMD:1;iRNA_m5C:0.999536712158578 44926 chr15 99434678 99434678 1 + C A UCEC 99434698 + 99434678 99434718 41 CTATGCCGGTGTCTGTGTGCCTGCCTGCCCGCCCAACACCT ATATGCCGGTGTCTGTGTGCCTGCCTGCCCGCCCAACACCT < 41bp 1 0.255672130709456 1 0.488168984651566 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control IGF1R ENSG00000140443 CDS Human protein_coding chr15:99434698 chr15:99434678 stopgain 0.949 0 1 hm5C_associated_SNPs_46217 0 0 1 0 0 Endoplasmic reticulum 1 0.500231644342481 1 0.999536711315038 hm5C_site_44926 DeepMRMD:1;iRNA_m5C:0.999536711315038 44927 chr2 118582618 118582618 1 + T C UCEC 118582619 + 118582599 118582639 41 CTTCTTTTCATCTTGTATGTCTGTGAAATACCACTATGAGT CTTCTTTTCATCTTGTATGCCTGTGAAATACCACTATGAGT < 41bp 1 0.326184556002065 1 0.208222210407257 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DDX18 ENSG00000088205 CDS Human protein_coding chr2:118582619 chr2:118582618 nonsynonymous SNV 0.832 4 20 hm5C_associated_SNPs_46218 0 0 1 0 1 Nucleus 1 0.500231297128453 1 0.999537405743095 hm5C_site_44927 DeepMRMD:1;iRNA_m5C:0.999537405743095 Ankylosing spondylitis 44928 chr3 52245358 52245358 1 + G A UCEC 52245356 + 52245336 52245376 41 CACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTG CACGAGTTCTCTGATTGACACCATACGGTCCTATGCTGCTG < 41bp 1 0.292713958049217 1 0.144481778144836 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245356 chr3:52245358 nonsynonymous SNV 0.031 1 23 hm5C_associated_SNPs_46219 0 0 1 0 1 Cytosol 1 0.500231643921118 1 0.999536712157763 hm5C_site_44928 DeepMRMD:1;iRNA_m5C:0.999536712157763 44929 chr3 52245358 52245358 1 + G A UCEC 52245357 + 52245337 52245377 41 ACGAGTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGG ACGAGTTCTCTGATTGACACCATACGGTCCTATGCTGCTGG < 41bp 1 0.129355172011371 1 0.286707162857056 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245357 chr3:52245358 nonsynonymous SNV 0.031 1 22 hm5C_associated_SNPs_46220 0 0 1 0 1 Cytosol 1 0.500255029082447 1 0.999489941835106 hm5C_site_44929 DeepMRMD:1;iRNA_m5C:0.999489941835106 44930 chr3 52245358 52245358 1 + G A UCEC 52245361 + 52245341 52245381 41 GTTCTCTGATTGACACCGTACGGTCCTATGCTGCTGGCTTC GTTCTCTGATTGACACCATACGGTCCTATGCTGCTGGCTTC < 41bp 1 0.413683213244099 1 0.520476758480072 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52245361 chr3:52245358 nonsynonymous SNV 0.031 1 18 hm5C_associated_SNPs_46221 0 0 1 0 1 Cytosol 1 0.50023164393698 0.959046483039856 0.99953671212604 hm5C_site_44930 DeepMRMD:0.959046483039856;iRNA_m5C:0.99953671212604 44931 chr12 112915760 112915760 1 + G A UCEC 112915765 + 112915745 112915785 41 GACTTTTGGCGGATGGTGTTCCAAGAAAACTCCCGAGTGAT GACTTTTGGCGGATGATGTTCCAAGAAAACTCCCGAGTGAT < 41bp 1 0.268103190182488 1 0.360567986965179 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915765 chr12:112915760 nonsynonymous SNV 0.995 2 16 hm5C_associated_SNPs_46222 0 0 1 0 2 Ribosome 1 0.500231643922134 1 0.999536712155731 hm5C_site_44931 DeepMRMD:1;iRNA_m5C:0.999536712155731 44932 chr14 24634127 24634127 1 + G A UCEC 24634110 + 24634090 24634130 41 CACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACGAGTGC CACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACGAATGC < 41bp 1 0.572366455127957 1 0.400598108768463 experiment 0.855267089744085 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control IRF9 ENSG00000213928 CDS Human protein_coding chr14:24634110 chr14:24634127 synonymous SNV . 0 38 hm5C_associated_SNPs_46224 0 0 0 0 1 Cytosol 1 0.500231612878315 1 0.999536774243371 hm5C_site_44932 DeepMRMD:1;iRNA_m5C:0.999536774243371 44933 chr22 30413916 30413916 1 + G A UCEC 30413919 + 30413899 30413939 41 TCCTCCCCCCTCCTCAGGTGCTGTACCCTGTGTGCCATGTG TCCTCCCCCCTCCTCAGATGCTGTACCCTGTGTGCCATGTG < 41bp 1 0.218401667092346 1 0.132720112800598 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30413919 chr22:30413916 nonsynonymous SNV 1.000 5 18 hm5C_associated_SNPs_46225 0 0 1 0 1 Ribosome 1 0.500231681291538 1 0.999536637416925 hm5C_site_44933 DeepMRMD:1;iRNA_m5C:0.999536637416925 44934 chr1 82372844 82372844 1 + T C UCEC 82372824 + 82372804 82372844 41 TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGT TTGAGAGCGCTAACTATGGTCGGACGGATGACAAGATTTGC < 41bp 1 0.297536557448165 1 0.383719503879547 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ADGRL2 ENSG00000117114 CDS Human protein_coding chr1:82372824 chr1:82372844 synonymous SNV . 0 41 hm5C_associated_SNPs_46226 0 0 1 0 1 cytosol 1 0.500231643897429 1 0.999536712205142 hm5C_site_44934 DeepMRMD:1;iRNA_m5C:0.999536712205142 44935 chr18 48190629 48190629 1 + G A UCEC 48190637 + 48190617 48190657 41 AAGTTCAGCGTGGCGTACATCGTCCAGGAGTACATGGAGAC AAGTTCAGCGTGACGTACATCGTCCAGGAGTACATGGAGAC < 41bp 1 0.130455302016707 1 0.168905705213547 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48190637 chr18:48190629 nonsynonymous SNV 0.985 2 13 hm5C_associated_SNPs_46228 0 0 0 0 0 exosome 1 0.500165126362139 1 0.999669747275723 hm5C_site_44935 DeepMRMD:1;iRNA_m5C:0.999669747275723 44936 chr8 1876667 1876667 1 + G T UCEC 1876673 + 1876653 1876693 41 CCCAAAGTCATTGAGTGCTTCAACGTGGAATCTCGCATCCT CCCAAAGTCATTGATTGCTTCAACGTGGAATCTCGCATCCT < 41bp 1 0.404632722724622 1 0.415042757987976 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1876673 chr8:1876667 nonsynonymous SNV 1.000 3 15 hm5C_associated_SNPs_46229 0 0 0 0 1 Nucleus 1 0.500231761485566 1 0.999536477028867 hm5C_site_44936 DeepMRMD:1;iRNA_m5C:0.999536477028867 44937 chr17 73567082 73567082 1 + C A UCEC 73567066 + 73567046 73567086 41 GCCAAGGCTGAGCGGCCAGGCCTCCAGAACATGGAGCTGGC GCCAAGGCTGAGCGGCCAGGCCTCCAGAACATGGAGATGGC < 41bp 1 0.0728287118903408 1 0.36929851770401 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73567066 chr17:73567082 nonsynonymous SNV 0.998 3 37 hm5C_associated_SNPs_46230 0 0 1 0 2 Endoplasmic reticulum 1 0.500246571468283 1 0.999506857063433 hm5C_site_44937 DeepMRMD:1;iRNA_m5C:0.999506857063433 44938 chr22 38028092 38028092 1 + G A UCEC 38028074 + 38028054 38028094 41 TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTG TCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACATG < 41bp 1 0.388600627837407 1 0.0536634922027588 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028074 chr22:38028092 nonsynonymous SNV 0.985 4 39 hm5C_associated_SNPs_46231 0 0 1 0 2 chromatin 1 0.50023164392112 1 0.99953671215776 hm5C_site_44938 DeepMRMD:1;iRNA_m5C:0.99953671215776 44939 chr19 13004418 13004418 1 + C A UCEC 13004401 + 13004381 13004421 41 CGATGAGTGTCCAGTCCTCCCTCGTCATGCACCCTATCTAT CGATGAGTGTCCAGTCCTCCCTCGTCATGCACCCTATATAT < 41bp 1 0.698646828169272 1 0.0597171485424042 experiment 0.602706343661456 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control GCDH ENSG00000105607 CDS Human protein_coding chr19:13004401 chr19:13004418 nonsynonymous SNV . 0 38 hm5C_associated_SNPs_46232 0 0 1 0 1 Ribosome 1 0.50023164818813 1 0.99953670362374 hm5C_site_44939 DeepMRMD:1;iRNA_m5C:0.99953670362374 44940 chr16 19548850 19548850 1 + G T UCEC 19548865 + 19548845 19548885 41 AAAAAGATACCCTAAGGGATCTGGCTTCGTTAACAAGAATA AAAAATATACCCTAAGGGATCTGGCTTCGTTAACAAGAATA < 41bp 1 0.383645188605308 1 0.173627018928528 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CCP110 ENSG00000103540 CDS Human protein_coding chr16:19548865 chr16:19548850 nonsynonymous SNV 0.994 2 6 hm5C_associated_SNPs_46233 0 0 1 0 1 Cytosol 1 0.500231654317488 1 0.999536691365025 hm5C_site_44940 DeepMRMD:1;iRNA_m5C:0.999536691365025 44941 chr16 30964935 30964935 1 + T C UCEC 30964947 + 30964927 30964967 41 CAGCACCGTCCCAAGCTGAGCCAGCCTGCCCACCCCGGCAA CAGCACCGCCCCAAGCTGAGCCAGCCTGCCCACCCCGGCAA < 41bp 1 0.299854360083755 1 0.0853093564510345 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30964947 chr16:30964935 nonsynonymous SNV 0.010 0 9 hm5C_associated_SNPs_46234 0 0 1 0 0 chromatin 1 0.500231643468856 1 0.999536713062288 hm5C_site_44941 DeepMRMD:1;iRNA_m5C:0.999536713062288 44942 chr11 67018221 67018221 1 + G A UCEC 67018208 + 67018188 67018228 41 AGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAGAGAA AGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCACAGAGAA < 41bp 1 0.449314879956816 1 0.605103254318237 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control KDM2A ENSG00000173120 CDS Human protein_coding chr11:67018208 chr11:67018221 nonsynonymous SNV 1.000 1 34 hm5C_associated_SNPs_46235 0 0 1 0 1 Cytosol 1 0.500231643921374 0.789793491363526 0.999536712157251 hm5C_site_44942 DeepMRMD:0.789793491363526;iRNA_m5C:0.999536712157251 44943 chr2 74077587 74077587 1 + G T UCEC 74077580 + 74077560 74077600 41 GATTACTGCAACACAGAGAACGAAGAAGAACTTTTCCTCAT GATTACTGCAACACAGAGAACGAAGAATAACTTTTCCTCAT < 41bp 1 0.605341357579748 1 0.506510555744171 experiment 0.789317284840503 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control STAMBP ENSG00000124356 CDS Human protein_coding chr2:74077580 chr2:74077587 stopgain 1.000 1 28 hm5C_associated_SNPs_46236 0 0 1 0 2 Ribosome 1 0.500231320222815 0.986978888511658 0.999537359554369 hm5C_site_44943 DeepMRMD:0.986978888511658;iRNA_m5C:0.999537359554369 44944 chr4 57876582 57876582 1 + C A UCEC 57876563 + 57876543 57876583 41 CTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTCT CTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTAT < 41bp 1 0.633013362841597 1 0.414021641016006 experiment 0.733973274316805 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control POLR2B ENSG00000047315 CDS Human protein_coding chr4:57876563 chr4:57876582 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_46237 0 0 1 0 2 Nucleus 1 0.500231643917908 1 0.999536712164184 hm5C_site_44944 DeepMRMD:1;iRNA_m5C:0.999536712164184 44945 chr17 7402704 7402704 1 + C A UCEC 7402691 + 7402671 7402711 41 CGCGAGCAGAGATCCAGGAGCTGGCCATGGTTCCTCGCATG CGCGAGCAGAGATCCAGGAGCTGGCCATGGTTCATCGCATG < 41bp 1 0.358353775580628 1 0.557013154029846 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control POLR2A ENSG00000181222 CDS Human protein_coding chr17:7402691 chr17:7402704 nonsynonymous SNV 0.999 1 34 hm5C_associated_SNPs_46238 0 0 1 0 0 Nucleus 1 0.500231728198832 0.885973691940308 0.999536543602336 hm5C_site_44945 DeepMRMD:0.885973691940308;iRNA_m5C:0.999536543602336 44946 chr18 46284678 46284678 1 + C T UCEC 46284660 + 46284640 46284680 41 CCCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGT CCCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAATGT < 41bp 1 0.237743953799476 1 0.448469161987305 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284660 chr18:46284678 nonsynonymous SNV 0.625 1 39 hm5C_associated_SNPs_46239 0 0 0 0 1 Cytosol 1 0.500231643921168 1 0.999536712157663 hm5C_site_44946 DeepMRMD:1;iRNA_m5C:0.999536712157663 44947 chr18 46284678 46284678 1 + C T UCEC 46284661 + 46284641 46284681 41 CCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAACGTA CCCACAGCAGTCAGGGGGGCCAGAGGTTGAGACAAAATGTA < 41bp 1 0.290466010977664 1 0.662755131721497 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284661 chr18:46284678 nonsynonymous SNV 0.625 1 38 hm5C_associated_SNPs_46240 0 0 0 0 1 Cytosol 1 0.500231643921096 0.674489736557006 0.999536712157809 hm5C_site_44947 DeepMRMD:0.674489736557006;iRNA_m5C:0.999536712157809 44948 chr18 46284678 46284678 1 + C T UCEC 46284696 + 46284676 46284716 41 AACGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG AATGTAAAGACAGTATTCTTCCCGAGCGCATCGGGGAGCGG < 41bp 1 0.513132197628962 1 0.127571642398834 experiment 0.973735604742077 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46284696 chr18:46284678 nonsynonymous SNV 0.625 1 3 hm5C_associated_SNPs_46241 0 0 0 0 1 Cytosol 1 0.500231611856796 1 0.999536776286408 hm5C_site_44948 DeepMRMD:1;iRNA_m5C:0.999536776286408 44949 chr7 92987679 92987679 1 + C T UCEC 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATCTCATATCAATAAGAAAGCAAGACAAAA < 41bp 1 0.530144466139446 1 0.341527998447418 experiment 0.939711067721109 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987679 synonymous SNV . 0 15 hm5C_associated_SNPs_46242 0 0 1 0 1 Cytosol 1 0.500231644025262 1 0.999536711949476 hm5C_site_44949 DeepMRMD:1;iRNA_m5C:0.999536711949476 44950 chr7 65706149 65706149 1 + C A UCEC 65706154 + 65706134 65706174 41 AACTTGTCTTACATCCTGAACGGTGGATGAGAACACTCTTA AACTTGTCTTACATCATGAACGGTGGATGAGAACACTCTTA < 41bp 1 0.273410547337313 1 0.657605171203613 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control TPST1 ENSG00000169902 CDS Human protein_coding chr7:65706154 chr7:65706149 nonsynonymous SNV 1.000 4 16 hm5C_associated_SNPs_46243 0 0 0 0 0 nucleoplasm 1 0.500231281431101 0.684789657592774 0.999537437137799 hm5C_site_44950 DeepMRMD:0.684789657592774;iRNA_m5C:0.999537437137799 44951 chr10 104160789 104160789 1 + G A UCEC 104160790 + 104160770 104160810 41 GGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGCTGGTCA GGGTACCCGACCCTCACCCACCTCCTTCTGAAGGCTGGTCA < 41bp 1 0.0602803885456944 1 0.151183575391769 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160790 chr10:104160789 nonsynonymous SNV 0.969 0 20 hm5C_associated_SNPs_46244 0 0 0 0 2 chromatin 1 0.500231643921175 1 0.99953671215765 hm5C_site_44951 DeepMRMD:1;iRNA_m5C:0.99953671215765 44952 chr17 38320059 38320059 1 + C A UCEC 38320054 + 38320034 38320074 41 ATCTCCAGAAGCAGATGCTCCAGTGCTTGGCAGTCCTGAGA ATCTCCAGAAGCAGATGCTCCAGTGATTGGCAGTCCTGAGA < 41bp 1 0.491984818502327 1 0.310342043638229 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320054 chr17:38320059 nonsynonymous SNV 0.994 0 26 hm5C_associated_SNPs_46245 0 0 1 0 0 Ribosome 1 0.500231643967353 1 0.999536712065294 hm5C_site_44952 DeepMRMD:1;iRNA_m5C:0.999536712065294 44953 chr17 38320059 38320059 1 + C A UCEC 38320064 + 38320044 38320084 41 GCAGATGCTCCAGTGCTTGGCAGTCCTGAGAAGGAAGAGGC GCAGATGCTCCAGTGATTGGCAGTCCTGAGAAGGAAGAGGC < 41bp 1 0.254662131816761 1 0.172947973012924 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320064 chr17:38320059 nonsynonymous SNV 0.994 0 16 hm5C_associated_SNPs_46246 0 0 1 0 0 Ribosome 1 0.50023164418748 1 0.99953671162504 hm5C_site_44953 DeepMRMD:1;iRNA_m5C:0.99953671162504 44954 chr17 38320059 38320059 1 + C A UCEC 38320069 + 38320049 38320089 41 TGCTCCAGTGCTTGGCAGTCCTGAGAAGGAAGAGGCAGCCT TGCTCCAGTGATTGGCAGTCCTGAGAAGGAAGAGGCAGCCT < 41bp 1 0.621106313611328 1 0.217439770698547 experiment 0.757787372777343 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320069 chr17:38320059 nonsynonymous SNV 0.994 0 11 hm5C_associated_SNPs_46247 0 0 1 0 0 Ribosome 1 0.500231590433266 1 0.999536819133468 hm5C_site_44954 DeepMRMD:1;iRNA_m5C:0.999536819133468 44955 chr3 141644482 141644482 1 + G A UCEC 141644475 + 141644455 141644495 41 AGATTGATGGATCAGCCAACCTAAAAAGTCAGGATGATCGT AGATTGATGGATCAGCCAACCTAAAAAATCAGGATGATCGT < 41bp 1 0.689179195057964 1 0.512169063091278 experiment 0.621641609884072 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141644475 chr3:141644482 nonsynonymous SNV 0.975 0 28 hm5C_associated_SNPs_46248 0 0 1 0 0 Ribosome 1 0.500231643909355 0.975661873817444 0.99953671218129 hm5C_site_44955 DeepMRMD:0.975661873817444;iRNA_m5C:0.99953671218129 44956 chr7 56136278 56136278 1 + G T UCEC 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCTAC < 41bp 1 0.618410999477053 1 0.719937384128571 experiment 0.763178001045893 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136278 synonymous SNV . 0 39 hm5C_associated_SNPs_46249 0 0 1 0 1 Ribosome 1 0.496889190245522 0.560125231742858 1 hm5C_site_44956 DeepMRMD:0.560125231742858;iRNA_m5C:1 44957 chr10 126205766 126205766 1 + C T UCEC 126205754 + 126205734 126205774 41 TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATCGT TCACTGCCGTGACAGGCCGTCATGATTGGGGATGATATCGT < 41bp 1 0.523943489150507 1 0.291867911815643 experiment 0.952113021698985 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126205754 chr10:126205766 synonymous SNV . 0 33 hm5C_associated_SNPs_46250 0 0 0 0 2 Ribosome 1 0.500231643015951 1 0.999536713968098 hm5C_site_44957 DeepMRMD:1;iRNA_m5C:0.999536713968098 44958 chr16 68104961 68104961 1 + A G UCEC 68104973 + 68104953 68104993 41 TCTTCCTCAAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG TCTTCCTCGAGGAGGGTCTGCGGCCCCTGGAGGAGGTCATG < 41bp 1 0.263483305997233 1 0.568089962005615 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104973 chr16:68104961 nonsynonymous SNV 0.999 0 9 hm5C_associated_SNPs_46251 0 0 1 0 1 Ribosome 1 0.500231643921083 0.86382007598877 0.999536712157833 hm5C_site_44958 DeepMRMD:0.86382007598877;iRNA_m5C:0.999536712157833 44959 chr7 149426313 149426313 1 + G T UCEC 149426306 + 149426286 149426326 41 GGCTGAGGCCTGCGAGTCAGCCGTCTCGGGCAGGGTAGGGG GGCTGAGGCCTGCGAGTCAGCCGTCTCTGGCAGGGTAGGGG < 41bp 1 0.0348279214973016 1 0.335925459861755 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149426306 chr7:149426313 nonsynonymous SNV 0.001 2 28 hm5C_associated_SNPs_46252 0 0 0 0 1 Cytosol 1 0.500231643613851 1 0.999536712772298 hm5C_site_44959 DeepMRMD:1;iRNA_m5C:0.999536712772298 44960 chr19 14024278 14024278 1 + C T UCEC 14024290 + 14024270 14024310 41 GGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT GGACATCCTGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGT < 41bp 1 0.269513656204536 1 0.215042024850845 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024290 chr19:14024278 nonsynonymous SNV 0.163 4 9 hm5C_associated_SNPs_46253 0 0 1 0 1 chromatin 1 0.500231643909115 1 0.99953671218177 hm5C_site_44960 DeepMRMD:1;iRNA_m5C:0.99953671218177 44961 chr19 1041933 1041933 1 + C T UCEC 1041928 + 1041908 1041948 41 CCTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGC CCTGCTTTCCGCAGCTGACACCGGGTGAGGAGCCCGGGCGC < 41bp 1 0.687163040677139 1 0.831888318061829 experiment 0.625673918645723 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041928 chr19:1041933 synonymous SNV . 0 26 hm5C_associated_SNPs_46254 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920329 0.336223363876342 0.999536712159342 hm5C_site_44961 DeepMRMD:0.336223363876342;iRNA_m5C:0.999536712159342 44962 chr19 1041933 1041933 1 + C T UCEC 1041929 + 1041909 1041949 41 CTGCTTTCCGCAGCTGACACCGGGCGAGGAGCCCGGGCGCC CTGCTTTCCGCAGCTGACACCGGGTGAGGAGCCCGGGCGCC < 41bp 1 0.531734972612922 1 0.931938409805298 experiment 0.936530054774156 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041929 chr19:1041933 synonymous SNV . 0 25 hm5C_associated_SNPs_46255 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 0.136123180389404 0.999536712157815 hm5C_site_44962 DeepMRMD:0.136123180389404;iRNA_m5C:0.999536712157815 44963 chr19 1041933 1041933 1 + C T UCEC 1041940 + 1041920 1041960 41 AGCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTC AGCTGACACCGGGTGAGGAGCCCGGGCGCCTGAGCAACTTC < 41bp 1 0.329948917536315 1 0.414792418479919 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041940 chr19:1041933 synonymous SNV . 0 14 hm5C_associated_SNPs_46256 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921107 1 0.999536712157786 hm5C_site_44963 DeepMRMD:1;iRNA_m5C:0.999536712157786 44964 chr19 1041933 1041933 1 + C T UCEC 1041941 + 1041921 1041961 41 GCTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCA GCTGACACCGGGTGAGGAGCCCGGGCGCCTGAGCAACTTCA < 41bp 1 0.365221169671122 1 0.860300064086914 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041941 chr19:1041933 synonymous SNV . 0 13 hm5C_associated_SNPs_46257 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643941079 0.279399871826172 0.999536712117843 hm5C_site_44964 DeepMRMD:0.279399871826172;iRNA_m5C:0.999536712117843 44965 chr19 1041933 1041933 1 + C T UCEC 1041942 + 1041922 1041962 41 CTGACACCGGGCGAGGAGCCCGGGCGCCTGAGCAACTTCAA CTGACACCGGGTGAGGAGCCCGGGCGCCTGAGCAACTTCAA < 41bp 1 0.389266834708698 1 0.787719249725342 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1041942 chr19:1041933 synonymous SNV . 0 12 hm5C_associated_SNPs_46258 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921377 0.424561500549316 0.999536712157246 hm5C_site_44965 DeepMRMD:0.424561500549316;iRNA_m5C:0.999536712157246 44966 chr11 63997002 63997002 1 + G A UCEC 63997000 + 63996980 63997020 41 GCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAG GCACTACCTGAGTGGGGGACCCAAGGCCCACGAGTCTACAG < 41bp 1 0.304923961783368 1 0.859289169311523 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997000 chr11:63997002 nonsynonymous SNV 0.838 4 23 hm5C_associated_SNPs_46259 0 0 0 0 2 Ribosome 1 0.500231643205533 0.281421661376954 0.999536713588935 hm5C_site_44966 DeepMRMD:0.281421661376954;iRNA_m5C:0.999536713588935 44967 chr15 41105602 41105602 1 + G C UCEC 41105590 + 41105570 41105610 41 TGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGC TGACGACGAGGATGAGGAGACAGCCATCCAAACAGTCCTGC < 41bp 1 0.495829173396495 1 0.204461663961411 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105590 chr15:41105602 nonsynonymous SNV 0.998 4 33 hm5C_associated_SNPs_46261 0 0 0 0 2 Ribosome 1 0.500232004996649 1 0.999535990006702 hm5C_site_44967 DeepMRMD:1;iRNA_m5C:0.999535990006702 44968 chr10 126205752 126205752 1 + G A UCEC 126205754 + 126205734 126205774 41 TCACTGCCGTGACAGGCCGTCATGATTGGGGACGATATCGT TCACTGCCGTGACAGGCCATCATGATTGGGGACGATATCGT < 41bp 1 0.592471519700503 1 0.255131483078003 experiment 0.815056960598994 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LHPP ENSG00000107902 CDS Human protein_coding chr10:126205754 chr10:126205752 nonsynonymous SNV 0.997 0 19 hm5C_associated_SNPs_46263 0 0 0 0 2 Ribosome 1 0.500231643863463 1 0.999536712273074 hm5C_site_44968 DeepMRMD:1;iRNA_m5C:0.999536712273074 44969 chr17 60768361 60768361 1 + G A UCEC 60768363 + 60768343 60768383 41 TGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGC TGAACTACTCCAACTGGGAGCCCCCGGGCTTGGGCCCCAGC < 41bp 1 0.0393081887934709 1 0.180947184562683 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768363 chr17:60768361 nonsynonymous SNV 0.682 1 19 hm5C_associated_SNPs_46265 0 0 1 0 1 Cytosol 1 0.500231643921094 1 0.999536712157812 hm5C_site_44969 DeepMRMD:1;iRNA_m5C:0.999536712157812 44970 chr17 60768361 60768361 1 + G A UCEC 60768364 + 60768344 60768384 41 GAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCA GAACTACTCCAACTGGGAGCCCCCGGGCTTGGGCCCCAGCA < 41bp 1 0.179533839439307 1 0.736636638641357 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768364 chr17:60768361 nonsynonymous SNV 0.682 1 18 hm5C_associated_SNPs_46266 0 0 1 0 1 Cytosol 1 0.500231643663404 0.526726722717286 0.999536712673192 hm5C_site_44970 DeepMRMD:0.526726722717286;iRNA_m5C:0.999536712673192 44971 chr17 60768361 60768361 1 + G A UCEC 60768365 + 60768345 60768385 41 AACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCAT AACTACTCCAACTGGGAGCCCCCGGGCTTGGGCCCCAGCAT < 41bp 1 0.278732189956025 1 0.866318345069885 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768365 chr17:60768361 nonsynonymous SNV 0.682 1 17 hm5C_associated_SNPs_46267 0 0 1 0 1 Cytosol 1 0.500231643922914 0.26736330986023 0.999536712154173 hm5C_site_44971 DeepMRMD:0.26736330986023;iRNA_m5C:0.999536712154173 44972 chr17 60768361 60768361 1 + G A UCEC 60768377 + 60768357 60768397 41 TGGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAA TGGGAGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAA < 41bp 1 0.395328595059909 1 0.215926051139832 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768377 chr17:60768361 nonsynonymous SNV 0.682 1 5 hm5C_associated_SNPs_46268 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44972 DeepMRMD:1;iRNA_m5C:0.999536712157815 44973 chr17 60768361 60768361 1 + G A UCEC 60768378 + 60768358 60768398 41 GGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAAC GGGAGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAAC < 41bp 1 0.115951536380853 1 0.261010706424713 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768378 chr17:60768361 nonsynonymous SNV 0.682 1 4 hm5C_associated_SNPs_46269 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44973 DeepMRMD:1;iRNA_m5C:0.999536712157815 44974 chr17 60768361 60768361 1 + G A UCEC 60768379 + 60768359 60768399 41 GGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACA GGAGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACA < 41bp 1 0.0816602702342588 1 0.294061660766602 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768379 chr17:60768361 nonsynonymous SNV 0.682 1 3 hm5C_associated_SNPs_46270 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44974 DeepMRMD:1;iRNA_m5C:0.999536712157815 44975 chr17 60768361 60768361 1 + G A UCEC 60768380 + 60768360 60768400 41 GGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAG GAGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAG < 41bp 1 0.616163982110186 1 0.555516481399536 experiment 0.767672035779628 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control MRC2 ENSG00000011028 CDS Human protein_coding chr17:60768380 chr17:60768361 nonsynonymous SNV 0.682 1 2 hm5C_associated_SNPs_46271 0 0 1 0 1 Cytosol 1 0.500231643929145 0.888967037200928 0.99953671214171 hm5C_site_44975 DeepMRMD:0.888967037200928;iRNA_m5C:0.99953671214171 44976 chr2 201761827 201761827 1 + G A UCEC 201761826 + 201761806 201761846 41 TTCTACATACTGGAATGGGACGGTTATGCACACTGGATGAA TTCTACATACTGGAATGGGACAGTTATGCACACTGGATGAA < 41bp 1 0.233751622247701 1 0.0319335758686066 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NIF3L1 ENSG00000196290 CDS Human protein_coding chr2:201761826 chr2:201761827 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_46272 0 0 1 0 1 Ribosome 1 0.500231642437052 1 0.999536715125896 hm5C_site_44976 DeepMRMD:1;iRNA_m5C:0.999536715125896 44977 chr16 19580908 19580908 1 + G A UCEC 19580890 + 19580870 19580910 41 TGTTTGCAGCCACTGCTGACCCCGCAGCCTTGGCAGCTGCC TGTTTGCAGCCACTGCTGACCCCGCAGCCTTGGCAGCTACC < 41bp 1 0.261198871419193 1 0.263618111610413 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19580890 chr16:19580908 nonsynonymous SNV 0.004 0 39 hm5C_associated_SNPs_46273 0 0 0 0 1 Cytosol 1 0.50023164392012 1 0.99953671215976 hm5C_site_44977 DeepMRMD:1;iRNA_m5C:0.99953671215976 44978 chr15 43632501 43632501 1 + C T UCEC 43632491 + 43632471 43632511 41 AGATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTACC AGATGTCATAAAAGAATTTGCAGATGACGGTGTCAAGTACC < 41bp 1 0.408233731022185 1 0.646604299545288 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ADAL ENSG00000168803 CDS Human protein_coding chr15:43632491 chr15:43632501 synonymous SNV . 0 31 hm5C_associated_SNPs_46274 0 0 1 0 1 chromatin 1 0.500231643957318 0.706791400909424 0.999536712085365 hm5C_site_44978 DeepMRMD:0.706791400909424;iRNA_m5C:0.999536712085365 44979 chr16 56867238 56867238 1 + G A UCEC 56867224 + 56867204 56867244 41 GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCGCTGCCA GCAGTTGCCTTTCTTTTCCGCATGGAGCGGCTGCACTGCCA < 41bp 1 0.446386791038303 1 0.102177023887634 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NUP93 ENSG00000102900 CDS Human protein_coding chr16:56867224 chr16:56867238 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_46275 0 0 1 0 1 Nucleus 1 0.500231643914581 1 0.999536712170839 hm5C_site_44979 DeepMRMD:1;iRNA_m5C:0.999536712170839 44980 chr15 101169707 101169707 1 + C T UCEC 101169701 + 101169681 101169721 41 CTCTTCACTATGCAGCCATGCATGGCCGGGCCCGCATTGCA CTCTTCACTATGCAGCCATGCATGGCTGGGCCCGCATTGCA < 41bp 1 0.46036108640579 1 0.035459041595459 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ASB7 ENSG00000183475 CDS Human protein_coding chr15:101169701 chr15:101169707 nonsynonymous SNV 1.000 3 27 hm5C_associated_SNPs_46276 0 0 1 0 1 Ribosome 1 0.500231643748472 1 0.999536712503057 hm5C_site_44980 DeepMRMD:1;iRNA_m5C:0.999536712503057 44981 chr1 186106670 186106670 1 + C T UCEC 186106679 + 186106659 186106699 41 TGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATCCAAAA TGGAGAGCCTGTAGTGTCACCTGTGGAAAAGGCATCCAAAA < 41bp 1 0.139712495269185 1 0.492576450109482 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186106679 chr1:186106670 synonymous SNV . 0 12 hm5C_associated_SNPs_46277 0 0 0 0 1 nucleus 1 0.500231641839975 1 0.999536716320049 hm5C_site_44981 DeepMRMD:1;iRNA_m5C:0.999536716320049 44982 chr1 43900122 43900122 1 + G T UCEC 43900109 + 43900089 43900129 41 CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGAGGCGAGTT CTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGATGCGAGTT < 41bp 1 0.104935202272359 1 0.471490681171417 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SZT2 ENSG00000198198 CDS Human protein_coding chr1:43900109 chr1:43900122 nonsynonymous SNV 0.999 3 34 hm5C_associated_SNPs_46278 0 0 1 0 2 Cytosol 1 0.500231643936371 1 0.999536712127259 hm5C_site_44982 DeepMRMD:1;iRNA_m5C:0.999536712127259 44983 chr11 107917088 107917088 1 + G A UCEC 107917091 + 107917071 107917111 41 TTGAGTTTATTAAGCAAGCACAGGCAGTAAGTTCTACATGC TTGAGTTTATTAAGCAAACACAGGCAGTAAGTTCTACATGC < 41bp 1 0.516094730374704 1 0.502670049667358 experiment 0.967810539250593 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CUL5 ENSG00000166266 CDS Human protein_coding chr11:107917091 chr11:107917088 nonsynonymous SNV 1.000 2 18 hm5C_associated_SNPs_46279 0 0 1 1 2 Ribosome 1 0.500231644525515 0.994659900665284 0.999536710948971 hm5C_site_44983 DeepMRMD:0.994659900665284;iRNA_m5C:0.999536710948971 44984 chr11 20139709 20139709 1 + G A UCEC 20139725 + 20139705 20139745 41 GGCAGCCAACTACTCCAGCCCCCAGAGCTATGACAGCGACT GGCAACCAACTACTCCAGCCCCCAGAGCTATGACAGCGACT < 41bp 1 0.0586670951025296 1 0.47314265370369 experiment 1 Functional Loss 31061524;GSE122265;BS-seq with improved protocol;Lung;Control NAV2 ENSG00000166833 CDS Human protein_coding chr11:20139725 chr11:20139709 nonsynonymous SNV 0.994 4 5 hm5C_associated_SNPs_46280 0 0 1 0 1 Nucleus 1 0.500231729411267 1 0.999536541177466 hm5C_site_44984 DeepMRMD:1;iRNA_m5C:0.999536541177466 44985 chr1 32680480 32680480 1 + C A UCEC 32680487 - 32680467 32680507 41 TTGCTTCTTGGCTGAATGGTCTGCTGGGGTCTGGCATAGAA TTGCTTCTTGGCTGAATGGTCTGCTGGTGTCTGGCATAGAA < 41bp 1 0.476309479541729 1 0.203716516494751 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32680487 chr1:32680480 nonsynonymous SNV 0.862 1 28 hm5C_associated_SNPs_46281 0 0 1 0 0 cytosol 1 0.500253891944907 1 0.999492216110185 hm5C_site_44985 DeepMRMD:1;iRNA_m5C:0.999492216110185 44986 chr17 73489156 73489156 1 + A G UCEC 73489149 + 73489129 73489169 41 CGGCGGCCTCCCCTCAGCCACATGATCAGCCTCTTCATTAA CGGCGGCCTCCCCTCAGCCACATGATCGGCCTCTTCATTAA < 41bp 1 0.520349492789163 1 0.0825403332710266 experiment 0.959301014421674 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73489149 chr17:73489156 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_46282 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44986 DeepMRMD:1;iRNA_m5C:0.999536712157815 44987 chr4 1206071 1206071 1 + A C UCEC 1206086 - 1206066 1206106 41 CCACCCGCCCCACGCCCCTTCTCCTGGCCAAACCGTCAAGC CCACCCGCCCCACGCCCCTTCTCCTGGCCAAACCGGCAAGC < 41bp 1 0.524087675408778 1 0.653192281723022 experiment 0.951824649182443 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1206086 chr4:1206071 nonsynonymous SNV 0.000 1 36 hm5C_associated_SNPs_46283 0 0 1 0 0 Ribosome 1 0.500231643921093 0.693615436553956 0.999536712157815 hm5C_site_44987 DeepMRMD:0.693615436553956;iRNA_m5C:0.999536712157815 44988 chr1 153617540 153617540 1 + G A UCEC 153617536 + 153617516 153617556 41 TTTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGT TTTTTTTTTTCCCCTTTGGGCCAGATCGGGGTATGATAGGT < 41bp 1 0.18796894792723 1 0.395487934350967 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617536 chr1:153617540 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_46284 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_44988 DeepMRMD:1;iRNA_m5C:0.999536712157815 44989 chr1 153617540 153617540 1 + G A UCEC 153617537 + 153617517 153617557 41 TTTTTTTTTCCCCTTTGGGCCAGGTCGGGGTATGATAGGTC TTTTTTTTTCCCCTTTGGGCCAGATCGGGGTATGATAGGTC < 41bp 1 0.0695031785581197 1 0.304279327392578 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617537 chr1:153617540 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_46285 0 0 1 0 1 Cytosol 1 0.50023159345922 1 0.99953681308156 hm5C_site_44989 DeepMRMD:1;iRNA_m5C:0.99953681308156 44990 chr7 99751517 99751517 1 + T C UCEC 99751531 + 99751511 99751551 41 TGCTGGTGACGGTGTCAGGACAGAGGGTGTTTGTGGTGAAG TGCTGGCGACGGTGTCAGGACAGAGGGTGTTTGTGGTGAAG < 41bp 1 0.683379408544662 1 0.603875517845154 experiment 0.633241182910675 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751531 chr7:99751517 nonsynonymous SNV 1.000 1 7 hm5C_associated_SNPs_46286 0 0 1 0 1 Cytosol 1 0.500231798195255 0.792248964309692 0.999536403609489 hm5C_site_44990 DeepMRMD:0.792248964309692;iRNA_m5C:0.999536403609489 44991 chr12 123463643 123463643 1 + T C UCEC 123463637 + 123463617 123463657 41 GTGCCATCTGCAGGCACCCACAGCCCTGACGGAGCCCCTGG GTGCCATCTGCAGGCACCCACAGCCCCGACGGAGCCCCTGG < 41bp 1 0.676208928670335 1 0.795725345611572 experiment 0.647582142659329 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OGFOD2 ENSG00000111325 CDS Human protein_coding chr12:123463637 chr12:123463643 nonsynonymous SNV 0.032 1 27 hm5C_associated_SNPs_46287 0 0 1 0 1 Cytosol 1 0.500231643923957 0.408549308776856 0.999536712152086 hm5C_site_44991 DeepMRMD:0.408549308776856;iRNA_m5C:0.999536712152086 44992 chr20 30753177 30753177 1 + C T UCEC 30753183 + 30753163 30753203 41 CTTCTGGCTGCTAACGGGTACCATCGGCTTCTATGCAGCCT CTTCTGGCTGCTAATGGGTACCATCGGCTTCTATGCAGCCT < 41bp 1 0.0379754907994016 1 0.139955192804337 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30753183 chr20:30753177 nonsynonymous SNV 0.998 4 15 hm5C_associated_SNPs_46288 0 0 1 0 1 Nucleus 1 0.500231643950981 1 0.999536712098038 hm5C_site_44992 DeepMRMD:1;iRNA_m5C:0.999536712098038 44993 chr19 4954457 4954457 1 + G A UCEC 4954456 + 4954436 4954476 41 GCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGG GCAGCAGGAGGGGGGCTTCGCATCCCCCAGGACGGGCAAGG < 41bp 1 0.253518371248529 1 0.484435677528381 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954456 chr19:4954457 . . 0 22 hm5C_associated_SNPs_46290 0 0 0 0 2 chromatin 1 0.500231681089023 1 0.999536637821954 hm5C_site_44993 DeepMRMD:1;iRNA_m5C:0.999536637821954 44994 chr19 4954457 4954457 1 + G A UCEC 4954460 + 4954440 4954480 41 CAGGAGGGGGGCTTCGCGTCCCCCAGGACGGGCAAGGGCAA CAGGAGGGGGGCTTCGCATCCCCCAGGACGGGCAAGGGCAA < 41bp 1 0.676168636472353 1 0.536575376987457 experiment 0.647662727055295 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954460 chr19:4954457 . . 0 18 hm5C_associated_SNPs_46291 0 0 0 0 2 chromatin 1 0.500231644999024 0.926849246025086 0.999536710001952 hm5C_site_44994 DeepMRMD:0.926849246025086;iRNA_m5C:0.999536710001952 44995 chr16 74339547 74339547 1 + A C UCEC 74339544 + 74339524 74339564 41 GGGCAGGAGAAAGAAGAGAGCAAAAAGGATAGGAAAGAGGA GGGCAGGAGAAAGAAGAGAGCAACAAGGATAGGAAAGAGGA < 41bp 1 0.660210750844336 1 0.529877424240112 experiment 0.679578498311327 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74339544 chr16:74339547 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_46292 0 0 1 0 0 Ribosome 1 0.500231539080197 0.940245151519776 0.999536921839605 hm5C_site_44995 DeepMRMD:0.940245151519776;iRNA_m5C:0.999536921839605 44996 chr16 74339547 74339547 1 + A C UCEC 74339565 + 74339545 74339585 41 AAAAAGGATAGGAAAGAGGACAAGGAGAAAGATAAAGATAA AACAAGGATAGGAAAGAGGACAAGGAGAAAGATAAAGATAA < 41bp 1 0.557006397709534 1 0.376390337944031 experiment 0.885987204580932 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74339565 chr16:74339547 nonsynonymous SNV 1.000 1 3 hm5C_associated_SNPs_46293 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44996 DeepMRMD:1;iRNA_m5C:0.999536712157815 44997 chr10 70719812 70719812 1 + A C UCEC 70719806 + 70719786 70719826 41 GAAAGTGGTTTCTTCTAAAACCAAAAAAGTGACAAAAAATG GAAAGTGGTTTCTTCTAAAACCAAAACAGTGACAAAAAATG < 41bp 1 0.32102569393629 1 0.150099992752075 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX21 ENSG00000165732 CDS Human protein_coding chr10:70719806 chr10:70719812 nonsynonymous SNV 0.950 1 27 hm5C_associated_SNPs_46294 0 0 1 0 0 Nucleus 1 0.500231644066108 1 0.999536711867784 hm5C_site_44997 DeepMRMD:1;iRNA_m5C:0.999536711867784 44998 chr7 73731885 73731885 1 + G T UCEC 73731903 + 73731883 73731923 41 AAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA AATCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCA < 41bp 1 0.301227171075101 1 0.294834136962891 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731903 chr7:73731885 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_46295 0 0 0 0 1 Ribosome 1 0.500231643921095 1 0.99953671215781 hm5C_site_44998 DeepMRMD:1;iRNA_m5C:0.99953671215781 44999 chr7 73731885 73731885 1 + G T UCEC 73731904 + 73731884 73731924 41 AGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC ATCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCAC < 41bp 1 0.42565295895453 1 0.271468162536621 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731904 chr7:73731885 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_46296 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_44999 DeepMRMD:1;iRNA_m5C:0.999536712157815 45000 chr7 73731885 73731885 1 + G T UCEC 73731905 + 73731885 73731925 41 GCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT TCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACT < 41bp 1 0.152663167273748 1 0.475224256515503 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731905 chr7:73731885 nonsynonymous SNV 1.000 4 1 hm5C_associated_SNPs_46297 0 0 0 0 1 Ribosome 1 0.500231643921222 1 0.999536712157556 hm5C_site_45000 DeepMRMD:1;iRNA_m5C:0.999536712157556 45001 chr2 120005503 120005503 1 + C A UCEC 120005510 + 120005490 120005530 41 GCCAGAACAAGTTCTTCAAGCTGCCCGTGTCCGTGGTCAAC GCCAGAACAAGTTATTCAAGCTGCCCGTGTCCGTGGTCAAC < 41bp 1 0.275304590328588 1 0.0148885548114777 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120005510 chr2:120005503 nonsynonymous SNV 0.998 1 14 hm5C_associated_SNPs_46298 0 0 1 0 0 Ribosome 1 0.500230301248052 1 0.999539397503897 hm5C_site_45001 DeepMRMD:1;iRNA_m5C:0.999539397503897 45002 chr9 15453183 15453183 1 + C A UCEC 15453178 + 15453158 15453198 41 GTCATCAGGGAGACTGTGAACATGTCATTGTCATTACTGAC GTCATCAGGGAGACTGTGAACATGTAATTGTCATTACTGAC < 41bp 1 0.362454474034898 1 0.0754299163818359 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453178 chr9:15453183 synonymous SNV . 0 26 hm5C_associated_SNPs_46299 0 0 1 1 0 Ribosome 1 0.500231630776061 1 0.999536738447878 hm5C_site_45002 DeepMRMD:1;iRNA_m5C:0.999536738447878 45003 chr14 93043733 93043733 1 + C T UCEC 93043725 + 93043705 93043745 41 ATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCTGGT ATGTTCCTGGTTCGCCGGGACAGCAGCTTGAAGCAGCTGGT < 41bp 1 0.453087123858586 1 0.466569930315018 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043725 chr14:93043733 nonsynonymous SNV 0.003 0 29 hm5C_associated_SNPs_46300 0 0 0 0 2 cytosol 1 0.500231644029953 1 0.999536711940094 hm5C_site_45003 DeepMRMD:1;iRNA_m5C:0.999536711940094 45004 chr2 133402827 133402827 1 + C T UCEC 133402834 + 133402814 133402854 41 TTCTACCTCAGCTCGGTCATCAACCCGCTCCTGTACACGGT TTCTACCTCAGCTTGGTCATCAACCCGCTCCTGTACACGGT < 41bp 1 0.166372841839046 1 0.166328370571136 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GPR39 ENSG00000183840 CDS Human protein_coding chr2:133402834 chr2:133402827 nonsynonymous SNV 0.953 4 14 hm5C_associated_SNPs_46301 0 0 0 0 0 nucleus 1 0.500231643926847 1 0.999536712146307 hm5C_site_45004 DeepMRMD:1;iRNA_m5C:0.999536712146307 45005 chr5 71491717 71491717 1 + T G UCEC 71491699 + 71491679 71491719 41 CCTGAGGATCTAACCAAGGACTTTGAAGAGTTAAAGGCTGA CCTGAGGATCTAACCAAGGACTTTGAAGAGTTAAAGGCGGA < 41bp 1 0.0561887141979868 1 0.131347626447678 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71491699 chr5:71491717 synonymous SNV . 0 39 hm5C_associated_SNPs_46302 0 0 1 0 0 Cytosol 1 0.500231638763695 1 0.99953672247261 hm5C_site_45005 DeepMRMD:1;iRNA_m5C:0.99953672247261 45006 chr1 162470026 162470026 1 + G T UCEC 162470019 + 162469999 162470039 41 CTCATTGACTTTGGACTTAGCTTCAAAGAAGGCAATCAGGT CTCATTGACTTTGGACTTAGCTTCAAATAAGGCAATCAGGT < 41bp 1 0.364904837395018 1 0.184536665678024 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162470019 chr1:162470026 stopgain 1.000 1 28 hm5C_associated_SNPs_46303 0 0 1 0 1 chromatin 1 0.500230685055389 1 0.999538629889221 hm5C_site_45006 DeepMRMD:1;iRNA_m5C:0.999538629889221 45007 chr17 28788917 28788917 1 + T G UCEC 28788910 + 28788890 28788930 41 TTCAGGTTCACAAGGGAGTTCATGGATTTGTTAAAGATAAG TTCAGGTTCACAAGGGAGTTCATGGATGTGTTAAAGATAAG < 41bp 1 0.147231526112709 1 0.180398404598236 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CPD ENSG00000108582 CDS Human protein_coding chr17:28788910 chr17:28788917 nonsynonymous SNV 0.997 0 28 hm5C_associated_SNPs_46304 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45007 DeepMRMD:1;iRNA_m5C:0.999536712157815 45008 chr10 102763510 102763510 1 + G A UCEC 102763493 + 102763473 102763513 41 TGGCTGGGCCAGTGGCTGCCCATCAGGGACGCTATCCGACT TGGCTGGGCCAGTGGCTGCCCATCAGGGACGCTATCCAACT < 41bp 1 0.44268484996051 1 0.255397140979767 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102763493 chr10:102763510 nonsynonymous SNV 0.799 4 38 hm5C_associated_SNPs_46305 0 0 1 0 0 Ribosome 1 0.500229988000595 1 0.99954002399881 hm5C_site_45008 DeepMRMD:1;iRNA_m5C:0.99954002399881 45009 chr18 77728123 77728123 1 + G T UCEC 77728106 + 77728086 77728126 41 TACTGGAAGAAATGGGAAATCGCATTGAGGACTTACAGAAG TACTGGAAGAAATGGGAAATCGCATTGAGGACTTACATAAG < 41bp 1 0.621547597730002 1 0.521802663803101 experiment 0.756904804539997 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HSBP1L1 ENSG00000226742 CDS Human protein_coding chr18:77728106 chr18:77728123 nonsynonymous SNV 0.975 3 38 hm5C_associated_SNPs_46306 0 0 1 0 1 Cytosol 1 0.500231643921093 0.956394672393798 0.999536712157815 hm5C_site_45009 DeepMRMD:0.956394672393798;iRNA_m5C:0.999536712157815 45010 chr2 75882236 75882236 1 + G A UCEC 75882235 + 75882215 75882255 41 CCTGGTCTAAACGCTGGGAACGTCCAAATTTTAATATTAAA CCTGGTCTAAACGCTGGGAACATCCAAATTTTAATATTAAA < 41bp 1 0.0625109626183063 1 0.176600992679596 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL19 ENSG00000115364 CDS Human protein_coding chr2:75882235 chr2:75882236 nonsynonymous SNV 0.982 2 22 hm5C_associated_SNPs_46307 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_45010 DeepMRMD:1;iRNA_m5C:0.999536712157815 45011 chr19 14037637 14037637 1 + G T UCEC 14037657 + 14037637 14037677 41 GAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA TAAGCTCAGAAAGACAAGACCAGTGTGATCAAGAACACAGA < 41bp 1 0.219374587266756 1 0.156742781400681 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14037657 chr19:14037637 stopgain 0.994 1 1 hm5C_associated_SNPs_46308 0 0 0 0 2 chromatin 1 0.500256936328859 1 0.999486127342283 hm5C_site_45011 DeepMRMD:1;iRNA_m5C:0.999486127342283 45012 chr5 154179522 154179522 1 + T C UCEC 154179534 + 154179514 154179554 41 AGGGCCTGTCTGCCAGCCTGCCTGACCTGGATTCTGAGAAC AGGGCCTGCCTGCCAGCCTGCCTGACCTGGATTCTGAGAAC < 41bp 1 0.24282547671622 1 0.046968400478363 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LARP1 ENSG00000155506 CDS Human protein_coding chr5:154179534 chr5:154179522 nonsynonymous SNV 0.998 4 9 hm5C_associated_SNPs_46309 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157816 hm5C_site_45012 DeepMRMD:1;iRNA_m5C:0.999536712157816 45013 chr19 1084254 1084254 1 + G A UCEC 1084244 + 1084224 1084264 41 TCTGCACTTGCAGGACGAGTCATCCAACCAGCGAGCTGAGG TCTGCACTTGCAGGACGAGTCATCCAACCAACGAGCTGAGG < 41bp 1 0.0902420953327887 1 0.0530829131603241 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1084244 chr19:1084254 synonymous SNV . 0 31 hm5C_associated_SNPs_46310 0 0 1 0 2 chromatin 1 0.500231643005056 1 0.999536713989889 hm5C_site_45013 DeepMRMD:1;iRNA_m5C:0.999536713989889 45014 chr18 61648980 61648980 1 + T C UCEC 61648969 + 61648949 61648989 41 TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATCAGGC TTGCAGGACTTTAAAGAATACTGTCAGAAGTCCTATCAGGC < 41bp 1 0.16238902706856 1 0.123280137777328 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61648969 chr18:61648980 nonsynonymous SNV 0.767 5 32 hm5C_associated_SNPs_46311 0 0 0 0 1 nucleus 1 0.500231643901263 1 0.999536712197473 hm5C_site_45014 DeepMRMD:1;iRNA_m5C:0.999536712197473 45015 chr15 74917251 74917251 1 + C A UCEC 74917240 + 74917220 74917260 41 TCTGTTTCCTTCCCGGGTACCAGAGGGAAGTCTCAGGTTGC TCTGTTTCCTTCCCGGGTACCAGAGGGAAGTATCAGGTTGC < 41bp 1 0.338889374695912 1 0.777703642845154 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CLK3 ENSG00000179335 CDS Human protein_coding chr15:74917240 chr15:74917251 nonsynonymous SNV 0.999 1 32 hm5C_associated_SNPs_46312 0 0 1 0 2 Nucleus 1 0.500231643921092 0.444592714309692 0.999536712157815 hm5C_site_45015 DeepMRMD:0.444592714309692;iRNA_m5C:0.999536712157815 45016 chr6 33243786 33243786 1 + G T UCEC 33243772 + 33243752 33243792 41 TGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA TGATCACCATTATGCAGAATCCACGCCAGTACAATATCCCA < 41bp 1 0.234185417939206 1 0.0510599911212921 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243772 chr6:33243786 nonsynonymous SNV 1.000 1 35 hm5C_associated_SNPs_46313 0 0 1 0 2 Cytosol 1 0.500231643921647 1 0.999536712156705 hm5C_site_45016 DeepMRMD:1;iRNA_m5C:0.999536712156705 45017 chr6 33243786 33243786 1 + G T UCEC 33243783 + 33243763 33243803 41 ATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTT ATGCAGAATCCACGCCAGTACAATATCCCAGACTGGTTCTT < 41bp 1 0.461490414269459 1 0.0322167277336121 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243783 chr6:33243786 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_46314 0 0 1 0 2 Cytosol 1 0.500231643939301 1 0.999536712121398 hm5C_site_45017 DeepMRMD:1;iRNA_m5C:0.999536712121398 45018 chr13 99042340 99042340 1 + G A UCEC 99042342 + 99042322 99042362 41 AAACCAAAGCCCAAGCCCGTCCTCTTTAGCCGGGGGTCATC AAACCAAAGCCCAAGCCCATCCTCTTTAGCCGGGGGTCATC < 41bp 1 0.042148829160997 1 0.0225205719470978 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control FARP1 ENSG00000152767 CDS Human protein_coding chr13:99042342 chr13:99042340 nonsynonymous SNV 0.994 4 19 hm5C_associated_SNPs_46315 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157813 hm5C_site_45018 DeepMRMD:1;iRNA_m5C:0.999536712157813 45019 chr7 139094358 139094358 1 + G A UCEC 139094341 + 139094321 139094361 41 GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACGAAG GAGAAGCAGGAGAAAAGAAACCAGGAACGGCTGAAACAAAG < 41bp 1 0.48694811053125 1 0.475083231925964 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094341 chr7:139094358 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_46316 0 0 1 0 2 unknown 1 0.500231643921093 1 0.999536712157814 hm5C_site_45019 DeepMRMD:1;iRNA_m5C:0.999536712157814 45020 chr7 139094358 139094358 1 + G A UCEC 139094348 + 139094328 139094368 41 AGGAGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAG AGGAGAAAAGAAACCAGGAACGGCTGAAACAAAGAGAAGAG < 41bp 1 0.572533591055492 1 0.333676993846893 experiment 0.854932817889016 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094348 chr7:139094358 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_46317 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_45020 DeepMRMD:1;iRNA_m5C:0.999536712157815 45021 chr7 139094358 139094358 1 + G A UCEC 139094351 + 139094331 139094371 41 AGAAAAGAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGA AGAAAAGAAACCAGGAACGGCTGAAACAAAGAGAAGAGAGA < 41bp 1 0.477984449641255 1 0.461202383041382 experiment 1 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094351 chr7:139094358 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_46318 0 0 1 0 2 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_45021 DeepMRMD:1;iRNA_m5C:0.999536712157815 45022 chr7 139094358 139094358 1 + G A UCEC 139094357 + 139094337 139094377 41 GAAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGA GAAACCAGGAACGGCTGAAACAAAGAGAAGAGAGAGAGAGA < 41bp 1 0.585331996954864 1 0.790554523468018 experiment 0.829336006090272 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094357 chr7:139094358 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_46319 0 0 1 0 2 unknown 1 0.500231643748807 0.418890953063964 0.999536712502387 hm5C_site_45022 DeepMRMD:0.418890953063964;iRNA_m5C:0.999536712502387 45023 chr1 161332256 161332256 1 + C A UCEC 161332236 + 161332216 161332256 41 CCATGTGAAGAAAGGAGGCTCCCAGCATCATCTTCCTACAC CCATGTGAAGAAAGGAGGCTCCCAGCATCATCTTCCTACAA < 41bp 1 0.355420566248574 1 0.0756389796733856 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control SDHC ENSG00000143252 CDS Human protein_coding chr1:161332236 chr1:161332256 nonsynonymous SNV 0.001 2 41 hm5C_associated_SNPs_46320 0 0 0 0 0 Ribosome 1 0.500231643921094 1 0.999536712157812 hm5C_site_45023 DeepMRMD:1;iRNA_m5C:0.999536712157812 45024 chr12 109629526 109629526 1 + C T UCEC 109629531 + 109629511 109629551 41 CCAGAACAACGACATCGACACCGGGTGGTTGGACTACCTCA CCAGAACAACGACATTGACACCGGGTGGTTGGACTACCTCA < 41bp 1 0.315667984613672 1 0.564565300941467 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109629531 chr12:109629526 synonymous SNV . 0 16 hm5C_associated_SNPs_46321 0 0 1 0 1 Nucleus 1 0.50023164490419 0.870869398117066 0.99953671019162 hm5C_site_45024 DeepMRMD:0.870869398117066;iRNA_m5C:0.99953671019162 45025 chr2 203157506 203157506 1 + G T UCEC 203157511 + 203157491 203157531 41 TTATACTAGGTGATTGAAATCTCTGAATATCGAACCCAGCT TTATACTAGGTGATTTAAATCTCTGAATATCGAACCCAGCT < 41bp 1 0.488239110448174 1 0.474218815565109 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NOP58 ENSG00000055044 CDS Human protein_coding chr2:203157511 chr2:203157506 stopgain 0.995 1 16 hm5C_associated_SNPs_46322 0 0 1 0 1 Nucleus 1 0.500231676949105 1 0.99953664610179 hm5C_site_45025 DeepMRMD:1;iRNA_m5C:0.99953664610179 45026 chrX 107838787 107838787 1 + G A UCEC 107838784 + 107838764 107838804 41 CTGCATTGGAACTGGTATTTCAGGGCCTCCAGGTCAACCTG CTGCATTGGAACTGGTATTTCAGAGCCTCCAGGTCAACCTG < 41bp 1 0.641146317333832 1 0.550340473651886 experiment 0.717707365332335 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133672;RNA-BisSeq;T24;Control|31061524;GSE122261;BS-seq with improved protocol;Hela;Control|28418038;GSE74771;RNA-BisSeq;293T;Control COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107838784 chrX:107838787 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_46323 1 0 1 0 2 Ribosome 1 0.500231633227451 0.899319052696228 0.999536733545098 hm5C_site_45026 DeepMRMD:0.899319052696228;iRNA_m5C:0.999536733545098 Alport syndrome, X-linked recessive Alport syndrome, X-linked recessive 45027 chr11 32118703 32118703 1 + C T UCEC 32118684 + 32118664 32118704 41 TCTTTTTTTTTTTTTTTGTACTGCAGGAAGATTGTTGATCG TCTTTTTTTTTTTTTTTGTACTGCAGGAAGATTGTTGATTG < 41bp 1 0.546146194933908 1 0.266208708286285 experiment 0.907707610132184 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCN1 ENSG00000049449 CDS Human protein_coding chr11:32118684 chr11:32118703 stopgain 0.996 1 40 hm5C_associated_SNPs_46326 0 0 1 0 1 Ribosome 1 0.500231646838601 1 0.999536706322797 hm5C_site_45027 DeepMRMD:1;iRNA_m5C:0.999536706322797 45028 chr11 32118703 32118703 1 + C T UCEC 32118687 + 32118667 32118707 41 TTTTTTTTTTTTTTGTACTGCAGGAAGATTGTTGATCGAAT TTTTTTTTTTTTTTGTACTGCAGGAAGATTGTTGATTGAAT < 41bp 1 0.501856235874518 1 0.485311090946198 experiment 0.996287528250964 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RCN1 ENSG00000049449 CDS Human protein_coding chr11:32118687 chr11:32118703 stopgain 0.996 1 37 hm5C_associated_SNPs_46327 0 0 1 0 1 Ribosome 1 0.500231653549544 1 0.999536692900913 hm5C_site_45028 DeepMRMD:1;iRNA_m5C:0.999536692900913 45029 chr11 65780850 65780850 1 + G T UCEC 65780832 + 65780812 65780852 41 CTTGTGGTTCCCTGGCAGAACTCCTCTCAGCTCCTAAAGCA CTTGTGGTTCCCTGGCAGAACTCCTCTCAGCTCCTAAATCA < 41bp 1 0.45357442587274 1 0.209898918867111 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CST6 ENSG00000175315 CDS Human protein_coding chr11:65780832 chr11:65780850 nonsynonymous SNV 0.660 0 39 hm5C_associated_SNPs_46328 0 0 0 0 1 Cytosol 1 0.500232026069862 1 0.999535947860277 hm5C_site_45029 DeepMRMD:1;iRNA_m5C:0.999535947860277 45030 chr17 65909003 65909003 1 + C T UCEC 65909010 + 65908990 65909030 41 TCCCTGACCACCACGGGAGGCACACTGGTTACATCTATGAC TCCCTGACCACCATGGGAGGCACACTGGTTACATCTATGAC < 41bp 1 0.14339445006575 1 0.0494157075881958 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BPTF ENSG00000171634 CDS Human protein_coding chr17:65909010 chr17:65909003 nonsynonymous SNV 0.428 2 14 hm5C_associated_SNPs_46329 0 0 1 0 0 Cytosol 1 0.500231644167905 1 0.999536711664191 hm5C_site_45030 DeepMRMD:1;iRNA_m5C:0.999536711664191 45031 chr10 12191667 12191667 1 + A C UCEC 12191687 + 12191667 12191707 41 AATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT CATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTAT < 41bp 1 0.510811821153781 1 0.0423297584056854 experiment 0.978376357692439 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191687 chr10:12191667 nonsynonymous SNV 1.000 1 1 hm5C_associated_SNPs_46330 0 0 1 0 2 Ribosome 1 0.500219793711483 1 0.999560412577034 hm5C_site_45031 DeepMRMD:1;iRNA_m5C:0.999560412577034 45032 chr2 97875443 97875443 1 + G T UCEC 97875436 + 97875416 97875456 41 AGTGTCTTCTCGGAAAAAACCAGCCTTGAAGGTAATGAAAC AGTGTCTTCTCGGAAAAAACCAGCCTTTAAGGTAATGAAAC < 41bp 1 0.264336312205661 1 0.447724223136902 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient ANKRD36 ENSG00000135976 CDS Human protein_coding chr2:97875436 chr2:97875443 nonsynonymous SNV 0.009 1 28 hm5C_associated_SNPs_46331 0 0 0 0 1 Cytosol 1 0.50023164392109 1 0.999536712157821 hm5C_site_45032 DeepMRMD:1;iRNA_m5C:0.999536712157821 45033 chrX 70517769 70517769 1 + A G UCEC 70517781 + 70517761 70517801 41 AGGATTCAAGGGAACCTTCCCTGATGCGGTATATCTCCCAT AGGATTCAGGGGAACCTTCCCTGATGCGGTATATCTCCCAT < 41bp 1 0.677375181065156 1 0.257016718387604 experiment 0.645249637869688 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NONO ENSG00000147140 CDS Human protein_coding chrX:70517781 chrX:70517769 nonsynonymous SNV 1.000 1 9 hm5C_associated_SNPs_46332 0 0 1 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45033 DeepMRMD:1;iRNA_m5C:0.999536712157815 45034 chr1 183096387 183096387 1 + C T UCEC 183096385 + 183096365 183096405 41 TGACTGTCATCCTGAGGGATCTCTTTCACTTCAGTGCAAAG TGACTGTCATCCTGAGGGATCTTTTTCACTTCAGTGCAAAG < 41bp 1 0.0136831719000148 1 0.0213032364845276 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183096385 chr1:183096387 nonsynonymous SNV 0.986 0 23 hm5C_associated_SNPs_46333 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45034 DeepMRMD:1;iRNA_m5C:0.999536712157815 45035 chr1 183096387 183096387 1 + C T UCEC 183096391 + 183096371 183096411 41 TCATCCTGAGGGATCTCTTTCACTTCAGTGCAAAGATGATG TCATCCTGAGGGATCTTTTTCACTTCAGTGCAAAGATGATG < 41bp 1 0.100472849179673 1 0.115063726902008 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183096391 chr1:183096387 nonsynonymous SNV 0.986 0 17 hm5C_associated_SNPs_46334 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45035 DeepMRMD:1;iRNA_m5C:0.999536712157815 45036 chr7 6438343 6438343 1 + G A UCEC 6438341 + 6438321 6438361 41 CCTCCCGGGGCAAAGACAAGCCGATTGCCGTATGTAAAACT CCTCCCGGGGCAAAGACAAGCCAATTGCCGTATGTAAAACT < 41bp 1 0.070355152485587 1 0.114302515983582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC1 ENSG00000136238 CDS Human protein_coding chr7:6438341 chr7:6438343 synonymous SNV . 0 23 hm5C_associated_SNPs_46335 0 0 1 0 2 Lamellipodium 1 0.500231643230948 1 0.999536713538103 hm5C_site_45036 DeepMRMD:1;iRNA_m5C:0.999536713538103 45037 chr7 6438343 6438343 1 + G A UCEC 6438342 + 6438322 6438362 41 CTCCCGGGGCAAAGACAAGCCGATTGCCGTATGTAAAACTT CTCCCGGGGCAAAGACAAGCCAATTGCCGTATGTAAAACTT < 41bp 1 0.150977789490783 1 0.212471276521683 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC1 ENSG00000136238 CDS Human protein_coding chr7:6438342 chr7:6438343 synonymous SNV . 0 22 hm5C_associated_SNPs_46336 0 0 1 0 2 Lamellipodium 1 0.500231643925182 1 0.999536712149637 hm5C_site_45037 DeepMRMD:1;iRNA_m5C:0.999536712149637 45038 chr7 6438343 6438343 1 + G A UCEC 6438348 + 6438328 6438368 41 GGGCAAAGACAAGCCGATTGCCGTATGTAAAACTTTCAGTC GGGCAAAGACAAGCCAATTGCCGTATGTAAAACTTTCAGTC < 41bp 1 0.360234308387322 1 0.278969466686249 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control RAC1 ENSG00000136238 CDS Human protein_coding chr7:6438348 chr7:6438343 synonymous SNV . 0 16 hm5C_associated_SNPs_46337 0 0 1 0 2 Lamellipodium 1 0.50023262351966 1 0.999534752960679 hm5C_site_45038 DeepMRMD:1;iRNA_m5C:0.999534752960679 45039 chr12 56331286 56331286 1 + T C UCEC 56331284 + 56331264 56331304 41 AGCCTGGCACTGTTTCAATCCTTTGAGACTGGTCACTGCTT AGCCTGGCACTGTTTCAATCCTCTGAGACTGGTCACTGCTT < 41bp 1 0.37142093360437 1 0.332315623760223 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DGKA ENSG00000065357 CDS Human protein_coding chr12:56331284 chr12:56331286 nonsynonymous SNV 0.744 3 23 hm5C_associated_SNPs_46338 0 0 1 0 3 Cytosol 1 0.500231643903448 1 0.999536712193104 hm5C_site_45039 DeepMRMD:1;iRNA_m5C:0.999536712193104 45040 chr15 64448304 64448304 1 + C T UCEC 64448294 - 64448274 64448314 41 ACAGACAGCCGGGATAAACCCCTGAAGGATGTGATCATCGC ACAGACAGCCAGGATAAACCCCTGAAGGATGTGATCATCGC < 41bp 1 0.614856342841668 1 0.222313791513443 experiment 0.770287314316663 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout PPIB ENSG00000166794 CDS Human protein_coding chr15:64448294 chr15:64448304 nonsynonymous SNV 0.991 2 11 hm5C_associated_SNPs_46339 1 0 1 0 1 Ribosome 1 0.500231500093113 1 0.999536999813775 hm5C_site_45040 DeepMRMD:1;iRNA_m5C:0.999536999813775 not specified not specified 45041 chr16 83251040 83251040 1 + G T UCEC 83251057 + 83251037 83251077 41 AATGAGAACACAGGGAGCGTCTCCGTGACACGGACCTTGGA AATTAGAACACAGGGAGCGTCTCCGTGACACGGACCTTGGA < 41bp 1 0.427553359570579 1 0.950599074363708 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH13 ENSG00000140945 CDS Human protein_coding chr16:83251057 chr16:83251040 stopgain 1.000 0 4 hm5C_associated_SNPs_46341 0 0 0 0 2 Nucleus 1 0.500231637247132 0.0988018512725839 0.999536725505736 hm5C_site_45041 DeepMRMD:0.0988018512725839;iRNA_m5C:0.999536725505736 45042 chr19 7598493 7598493 1 + C T UCEC 7598504 + 7598484 7598524 41 GGCAAGTTCCGCCGCGGGAGCGGCTCGGCCTGCAGCCTTCT GGCAAGTTCTGCCGCGGGAGCGGCTCGGCCTGCAGCCTTCT < 41bp 1 0.448909999466683 1 0.0503866970539093 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control MCOLN1 ENSG00000090674;ENSG00000268614 CDS Human other chr19:7598504 chr19:7598493 nonsynonymous SNV 0.986 5 10 hm5C_associated_SNPs_46342 0 0 0 0 2 chromatin 1 0.500231643921088 1 0.999536712157823 hm5C_site_45042 DeepMRMD:1;iRNA_m5C:0.999536712157823 45043 chr17 72239541 72239541 1 + C A UCEC 72239546 + 72239526 72239566 41 CTCCTGCTCTTTATCCTGGACCTGGTCATCTGCCTCATTGC CTCCTGCTCTTTATCATGGACCTGGTCATCTGCCTCATTGC < 41bp 1 0.153656114889925 1 0.07244473695755 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72239546 chr17:72239541 nonsynonymous SNV 1.000 1 16 hm5C_associated_SNPs_46343 0 0 1 0 2 Endoplasmic reticulum 1 0.500231643921136 1 0.999536712157729 hm5C_site_45043 DeepMRMD:1;iRNA_m5C:0.999536712157729 45044 chr1 39898741 39898741 1 + C T UCEC 39898725 + 39898705 39898745 41 GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTCGACA GTTTACTTTTCAAAGGCTTTCTCCATTGACATTATTTGACA < 41bp 1 0.205380127011611 1 0.94687557220459 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39898725 chr1:39898741 stopgain 1.000 1 37 hm5C_associated_SNPs_46345 0 0 1 0 2 Endoplasmic reticulum 1 0.500231645564508 0.10624885559082 0.999536708870984 hm5C_site_45044 DeepMRMD:0.10624885559082;iRNA_m5C:0.999536708870984 45045 chr1 63282296 63282296 1 + G T UCEC 63282293 + 63282273 63282313 41 CGGGATGTACAATAGAGGATCACGTAATTGCAGGAAATGTA CGGGATGTACAATAGAGGATCACTTAATTGCAGGAAATGTA < 41bp 1 0.141659403642883 1 0.102773934602737 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ATG4C ENSG00000125703 CDS Human protein_coding chr1:63282293 chr1:63282296 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_46346 0 0 1 0 1 Ribosome 1 0.500231643980167 1 0.999536712039666 hm5C_site_45045 DeepMRMD:1;iRNA_m5C:0.999536712039666 45046 chr1 43162438 43162438 1 + A G UCEC 43162444 + 43162424 43162464 41 CGCAATTACCAGCAAAATTACCAGAATAGTGAGAGTGGGGA CGCAATTACCAGCAGAATTACCAGAATAGTGAGAGTGGGGA < 41bp 1 0.564265007731899 1 0.280603408813477 experiment 0.871469984536201 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout YBX1 ENSG00000065978 CDS Human protein_coding chr1:43162444 chr1:43162438 synonymous SNV . 0 15 hm5C_associated_SNPs_46347 0 0 1 0 0 Cytosol 1 0.500231643919162 1 0.999536712161675 hm5C_site_45046 DeepMRMD:1;iRNA_m5C:0.999536712161675 45047 chr3 38180299 38180299 1 + C A UCEC 38180279 + 38180259 38180299 41 CTGCTCTCAACATGCGAGTGCGGCGCCGCCTGTCTCTGTTC CTGCTCTCAACATGCGAGTGCGGCGCCGCCTGTCTCTGTTA < 41bp 1 0.612098460493455 1 0.388268053531647 experiment 0.775803079013089 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYD88 ENSG00000172936 CDS Human protein_coding chr3:38180279 chr3:38180299 nonsynonymous SNV 0.933 2 41 hm5C_associated_SNPs_46348 0 0 1 0 0 Ribosome 1 0.500228649284366 1 0.999542701431269 hm5C_site_45047 DeepMRMD:1;iRNA_m5C:0.999542701431269 45048 chr3 38180299 38180299 1 + C A UCEC 38180284 + 38180264 38180304 41 CTCAACATGCGAGTGCGGCGCCGCCTGTCTCTGTTCTTGAA CTCAACATGCGAGTGCGGCGCCGCCTGTCTCTGTTATTGAA < 41bp 1 0.130958552271787 1 0.262481808662415 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MYD88 ENSG00000172936 CDS Human protein_coding chr3:38180284 chr3:38180299 nonsynonymous SNV 0.933 2 36 hm5C_associated_SNPs_46349 0 0 1 0 0 Ribosome 1 0.500231571359541 1 0.999536857280917 hm5C_site_45048 DeepMRMD:1;iRNA_m5C:0.999536857280917 45049 chr1 114440547 114440547 1 + C T UCEC 114440557 - 114440537 114440577 41 CCTGTATTGTAGTGGTGGTGCAGACTTTCCGAGACCTGGTT CCTGTATTGTAGTGGTGGTGCAGACTTTCCAAGACCTGGTT < 41bp 1 0.462629588445433 1 0.198393851518631 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440557 chr1:114440547 nonsynonymous SNV 1.000 3 31 hm5C_associated_SNPs_46350 0 0 0 0 2 chromatin 1 0.500231643918813 1 0.999536712162373 hm5C_site_45049 DeepMRMD:1;iRNA_m5C:0.999536712162373 45050 chr2 207174862 207174862 1 + G A UCEC 207174847 + 207174827 207174867 41 TTTGATGATGACTGTGAGACCAAAAAAGTTTCTTCGAAGGG TTTGATGATGACTGTGAGACCAAAAAAGTTTCTTCAAAGGG < 41bp 1 0.448304902033874 1 0.214750707149506 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207174847 chr2:207174862 synonymous SNV . 0 36 hm5C_associated_SNPs_46351 0 0 1 0 0 Nucleus 1 0.500231643921069 1 0.999536712157861 hm5C_site_45050 DeepMRMD:1;iRNA_m5C:0.999536712157861 45051 chr3 180693112 180693112 1 + G T UCEC 180693102 + 180693082 180693122 41 TTTTTCTCATCTTTAACAGTCACAGTTGCAGATTATATTTC TTTTTCTCATCTTTAACAGTCACAGTTGCATATTATATTTC < 41bp 1 0.217435044962354 1 0.116591483354568 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control FXR1 ENSG00000114416 CDS Human protein_coding chr3:180693102 chr3:180693112 nonsynonymous SNV 1.000 4 31 hm5C_associated_SNPs_46352 0 0 1 0 2 Exosome 1 0.500231643921142 1 0.999536712157715 hm5C_site_45051 DeepMRMD:1;iRNA_m5C:0.999536712157715 45052 chr20 18455766 18455766 1 + G T UCEC 18455764 + 18455744 18455784 41 TAAAAGTAATTTGCCATTAACAGAAATCAACAAAATTCTGA TAAAAGTAATTTGCCATTAACATAAATCAACAAAATTCTGA < 41bp 1 0.265355955786124 1 0.0934963226318359 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient POLR3F ENSG00000132664 CDS Human protein_coding chr20:18455764 chr20:18455766 stopgain 1.000 1 23 hm5C_associated_SNPs_46353 0 0 1 3 2 Ribosome 1 0.499505184868619 1 1 hm5C_site_45052 DeepMRMD:1;iRNA_m5C:1 45053 chr12 54675961 54675961 1 + G T UCEC 54675973 + 54675953 54675993 41 ACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTG ACCTAAGATATTATTTTGAACAGTATGGAAAAATTGAAGTG < 41bp 1 0.531200995662408 1 0.29952472448349 experiment 0.937598008675184 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675973 chr12:54675961 nonsynonymous SNV 1.000 4 9 hm5C_associated_SNPs_46354 0 0 0 5 1 Cytosol 1 0.500231643414539 1 0.999536713170922 hm5C_site_45053 DeepMRMD:1;iRNA_m5C:0.999536713170922 45054 chr4 6596390 6596390 1 + C T UCEC 6596403 + 6596383 6596423 41 CTACTTCCGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG CTACTTCTGTGCCCTGCACGCTCTCAATGTCACCTGGCGTG < 41bp 1 0.187193612593771 1 0.0348293483257294 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6596403 chr4:6596390 nonsynonymous SNV 0.314 2 8 hm5C_associated_SNPs_46355 0 0 0 0 2 Endoplasmic reticulum 1 0.500231728218525 1 0.99953654356295 hm5C_site_45054 DeepMRMD:1;iRNA_m5C:0.99953654356295 45055 chr5 14359513 14359513 1 + A G UCEC 14359530 + 14359510 14359550 41 TCAACCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG TCAGCCACATTGAGACGGTGCTGCAGCAGCTGGACGAGGCG < 41bp 1 0.362794715459615 1 0.524350523948669 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TRIO ENSG00000038382 CDS Human protein_coding chr5:14359530 chr5:14359513 nonsynonymous SNV 0.943 0 4 hm5C_associated_SNPs_46356 0 0 1 0 1 Nucleus 1 0.50023239178407 0.951298952102662 0.999535216431861 hm5C_site_45055 DeepMRMD:0.951298952102662;iRNA_m5C:0.999535216431861 45056 chr20 62366069 62366069 1 + A T UCEC 62366054 + 62366034 62366074 41 TGCCCTCTGTCCGTCTCTTGCAGTGGTGGGGTCAGATGCTG TGCCCTCTGTCCGTCTCTTGCAGTGGTGGGGTCAGTTGCTG < 41bp 1 0.471229552319575 1 0.436184406280518 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62366054 chr20:62366069 nonsynonymous SNV 0.000 0 36 hm5C_associated_SNPs_46357 0 0 1 0 2 chromatin 1 0.500231643921166 1 0.999536712157667 hm5C_site_45056 DeepMRMD:1;iRNA_m5C:0.999536712157667 45057 chr2 63834052 63834052 1 + G T UCEC 63834066 + 63834046 63834086 41 TGAGAAGATGGATCTTACTGCAAAGGAACTGACAGAAGAAA TGAGAATATGGATCTTACTGCAAAGGAACTGACAGAAGAAA < 41bp 1 0.288603837598851 1 0.122125118970871 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MDH1 ENSG00000014641 CDS Human protein_coding chr2:63834066 chr2:63834052 nonsynonymous SNV 1.000 4 7 hm5C_associated_SNPs_46358 0 0 1 0 1 Cytosol 1 0.500231656406631 1 0.999536687186737 hm5C_site_45057 DeepMRMD:1;iRNA_m5C:0.999536687186737 45058 chrX 153035876 153035876 1 + G A UCEC 153035874 + 153035854 153035894 41 CTCCTTTTATGACTGCAGTGCCGTCCAGGCCTTGGAGGCGG CTCCTTTTATGACTGCAGTGCCATCCAGGCCTTGGAGGCGG < 41bp 1 0.0185762653911291 1 0.0539510846138 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153035874 chrX:153035876 nonsynonymous SNV 0.467 0 23 hm5C_associated_SNPs_46359 0 0 0 0 2 Endoplasmic reticulum 1 0.50023164392018 1 0.99953671215964 hm5C_site_45058 DeepMRMD:1;iRNA_m5C:0.99953671215964 45059 chr19 50027855 50027855 1 + G A UCEC 50027862 + 50027842 50027882 41 ACCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTG ACCCTCCGGAGCTACAACTTCGGTTCCTGCGGAATGGGCTG < 41bp 1 0.433478842450071 1 0.428003072738647 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control FCGRT ENSG00000104870 CDS Human protein_coding chr19:50027862 chr19:50027855 synonymous SNV . 0 14 hm5C_associated_SNPs_46360 0 0 1 1 1 Endoplasmic reticulum 1 0.50023164318554 1 0.99953671362892 hm5C_site_45059 DeepMRMD:1;iRNA_m5C:0.99953671362892 45060 chr11 47296642 47296642 1 + G A UCEC 47296654 + 47296634 47296674 41 ACTCTCAAGCGCCTGGTGGACTGCTGTAGTGAGCGCCTTCT ACTCTCAAACGCCTGGTGGACTGCTGTAGTGAGCGCCTTCT < 41bp 1 0.468642303015696 1 0.113828539848328 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MADD ENSG00000110514 CDS Human protein_coding chr11:47296654 chr11:47296642 synonymous SNV . 0 9 hm5C_associated_SNPs_46361 0 0 1 0 1 Nucleus 1 0.500231644365534 1 0.999536711268931 hm5C_site_45060 DeepMRMD:1;iRNA_m5C:0.999536711268931 45061 chrX 41089043 41089043 1 + C T UCEC 41089025 + 41089005 41089045 41 AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGCCA AAAAGCTTGTGAACTCTGTCCAGAGGAGGTAAAAAAAGTCA < 41bp 1 0.185266154177441 1 0.782468795776367 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089025 chrX:41089043 nonsynonymous SNV 1.000 0 39 hm5C_associated_SNPs_46362 0 0 0 0 1 Nucleus 1 0.500231641724447 0.435062408447266 0.999536716551106 hm5C_site_45061 DeepMRMD:0.435062408447266;iRNA_m5C:0.999536716551106 45062 chrX 41089043 41089043 1 + C T UCEC 41089044 + 41089024 41089064 41 CCAGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGA CCAGAGGAGGTAAAAAAAGTCACCAGTGTGCAGCAGATAGA < 41bp 1 0.591969525164739 1 0.279480338096619 experiment 0.816060949670522 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089044 chrX:41089043 nonsynonymous SNV 1.000 0 20 hm5C_associated_SNPs_46363 0 0 0 0 1 Nucleus 1 0.500231643953918 1 0.999536712092163 hm5C_site_45062 DeepMRMD:1;iRNA_m5C:0.999536712092163 45063 chrX 41089043 41089043 1 + C T UCEC 41089046 + 41089026 41089066 41 AGAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAA AGAGGAGGTAAAAAAAGTCACCAGTGTGCAGCAGATAGAAA < 41bp 1 0.0841122102214348 1 0.0800729990005493 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089046 chrX:41089043 nonsynonymous SNV 1.000 0 18 hm5C_associated_SNPs_46364 0 0 0 0 1 Nucleus 1 0.500231474381821 1 0.999537051236358 hm5C_site_45063 DeepMRMD:1;iRNA_m5C:0.999537051236358 45064 chrX 41089043 41089043 1 + C T UCEC 41089047 + 41089027 41089067 41 GAGGAGGTAAAAAAAGCCACCAGTGTGCAGCAGATAGAAAT GAGGAGGTAAAAAAAGTCACCAGTGTGCAGCAGATAGAAAT < 41bp 1 0.132253623353821 1 0.115479081869125 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control USP9X ENSG00000124486 CDS Human protein_coding chrX:41089047 chrX:41089043 nonsynonymous SNV 1.000 0 17 hm5C_associated_SNPs_46365 0 0 0 0 1 Nucleus 1 0.50023165182587 1 0.99953669634826 hm5C_site_45064 DeepMRMD:1;iRNA_m5C:0.99953669634826 45065 chr12 122623409 122623409 1 + G A UCEC 122623396 + 122623376 122623416 41 TGCTCCCTGCCACGGGAGTCCCCGTTACCCGGCGCCAGTTT TGCTCCCTGCCACGGGAGTCCCCGTTACCCGGCACCAGTTT < 41bp 1 0.169395949547059 1 0.108262240886688 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control MLXIP ENSG00000175727 CDS Human protein_coding chr12:122623396 chr12:122623409 nonsynonymous SNV 0.987 0 34 hm5C_associated_SNPs_46366 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_45065 DeepMRMD:1;iRNA_m5C:0.999536712157815 45066 chr6 33179715 33179715 1 + G A UCEC 33179728 + 33179708 33179748 41 TTGCCCAGCCTGGAGGGCGTCAGTGAAAAGCAGTACACCAT TTGCCCAACCTGGAGGGCGTCAGTGAAAAGCAGTACACCAT < 41bp 1 0.536302547305005 1 0.200587064027786 experiment 0.927394905389989 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RING1 ENSG00000204227 CDS Human protein_coding chr6:33179728 chr6:33179715 nonsynonymous SNV 0.998 2 8 hm5C_associated_SNPs_46368 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45066 DeepMRMD:1;iRNA_m5C:0.999536712157815 45067 chr5 134099691 134099691 1 + C T UCEC 134099676 + 134099656 134099696 41 CCTCAGACAAAAGAAGTAAACGTGGAGATGACAGACGGTCT CCTCAGACAAAAGAAGTAAACGTGGAGATGACAGATGGTCT < 41bp 1 0.691057080189127 1 0.618604600429535 experiment 0.617885839621746 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099676 chr5:134099691 nonsynonymous SNV 0.990 4 36 hm5C_associated_SNPs_46369 0 0 1 0 2 Cytosol 1 0.500231643921092 0.76279079914093 0.999536712157815 hm5C_site_45067 DeepMRMD:0.76279079914093;iRNA_m5C:0.999536712157815 45068 chr5 134099691 134099691 1 + C T UCEC 134099687 + 134099667 134099707 41 AGAAGTAAACGTGGAGATGACAGACGGTCTAGAAGTAGAGA AGAAGTAAACGTGGAGATGACAGATGGTCTAGAAGTAGAGA < 41bp 1 0.610664743080431 1 0.424669414758682 experiment 0.778670513839138 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099687 chr5:134099691 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_46370 0 0 1 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_45068 DeepMRMD:1;iRNA_m5C:0.999536712157815 45069 chr18 56063419 56063419 1 + C A UCEC 56063414 + 56063394 56063434 41 TGCAGCTTTAATCGCCTTGACTTACCTCCATATGAAACCTT TGCAGCTTTAATCGCCTTGACTTACATCCATATGAAACCTT < 41bp 1 0.0478821858691343 1 0.0756919384002686 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEDD4L ENSG00000049759 CDS Human protein_coding chr18:56063414 chr18:56063419 nonsynonymous SNV 1.000 4 26 hm5C_associated_SNPs_46371 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_45069 DeepMRMD:1;iRNA_m5C:0.999536712157815 45070 chr12 58121825 58121825 1 + C T UCEC 58121832 + 58121812 58121852 41 CCTCAAAGTGCCACGTCTGACCCGTGCTGGACACGATCAGG CCTCAAAGTGCCATGTCTGACCCGTGCTGGACACGATCAGG < 41bp 1 0.547616505149282 1 0.152056276798248 experiment 0.904766989701435 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control AGAP2 ENSG00000135439 CDS Human protein_coding chr12:58121832 chr12:58121825 synonymous SNV . 0 14 hm5C_associated_SNPs_46372 0 0 0 1 0 exosome 1 0.500231643640815 1 0.99953671271837 hm5C_site_45070 DeepMRMD:1;iRNA_m5C:0.99953671271837 45071 chr19 50385608 50385608 1 + C G UCEC 50385593 + 50385573 50385613 41 GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGC GCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCGCCCGC < 41bp 1 0.295655035518723 1 0.159971326589584 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385593 chr19:50385608 nonsynonymous SNV 0.228 0 36 hm5C_associated_SNPs_46373 0 0 1 0 1 membrane 1 0.500231643921092 1 0.999536712157815 hm5C_site_45071 DeepMRMD:1;iRNA_m5C:0.999536712157815 45072 chr19 50385608 50385608 1 + C G UCEC 50385594 + 50385574 50385614 41 CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGCC CAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCGCCCGCC < 41bp 1 0.502239298923618 1 0.348650127649307 experiment 0.995521402152765 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50385594 chr19:50385608 nonsynonymous SNV 0.228 0 35 hm5C_associated_SNPs_46374 0 0 1 0 1 membrane 1 0.500231643961622 1 0.999536712076755 hm5C_site_45072 DeepMRMD:1;iRNA_m5C:0.999536712076755 45073 chr12 7362288 7362288 1 + C T UCEC 7362307 + 7362287 7362327 41 GCTGTGGAATAAGCTAGGCGCCACCCTGGCCAATGGAAACC GTTGTGGAATAAGCTAGGCGCCACCCTGGCCAATGGAAACC < 41bp 1 0.0830313491862423 1 0.0447022616863251 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PEX5 ENSG00000139197 CDS Human protein_coding chr12:7362307 chr12:7362288 synonymous SNV . 0 2 hm5C_associated_SNPs_46375 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45073 DeepMRMD:1;iRNA_m5C:0.999536712157815 45074 chr15 69737238 69737238 1 + C T UCEC 69737220 + 69737200 69737240 41 CAGATGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTG CAGATGGGTAGATCATAAGCCCGCCTCTAACATGCAAATTG < 41bp 1 0.173888273742693 1 0.0459257364273071 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737220 chr15:69737238 nonsynonymous SNV 0.995 1 39 hm5C_associated_SNPs_46376 0 0 0 0 0 Nucleus 1 0.500231645605329 1 0.999536708789342 hm5C_site_45074 DeepMRMD:1;iRNA_m5C:0.999536708789342 45075 chr15 69737238 69737238 1 + C T UCEC 69737224 + 69737204 69737244 41 TGGGTAGATCATAAGCCCGCCTCTAACATGCAAACTGAAAC TGGGTAGATCATAAGCCCGCCTCTAACATGCAAATTGAAAC < 41bp 1 0.252807949887614 1 0.346040427684784 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69737224 chr15:69737238 nonsynonymous SNV 0.995 1 35 hm5C_associated_SNPs_46377 0 0 0 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45075 DeepMRMD:1;iRNA_m5C:0.999536712157815 45076 chr19 7589952 7589952 1 + A G UCEC 7589936 + 7589916 7589956 41 CACCCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAAATAC CACCCCCAGAAGAGGAAGACCTTCGCCGTCGTCTCAGATAC < 41bp 1 0.351188675773873 1 0.0976506471633911 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589936 chr19:7589952 nonsynonymous SNV 0.997 1 37 hm5C_associated_SNPs_46378 0 0 1 0 0 chromatin 1 0.500231658958062 1 0.999536682083876 hm5C_site_45076 DeepMRMD:1;iRNA_m5C:0.999536682083876 45077 chr5 65105419 65105419 1 + G A UCEC 65105431 + 65105411 65105451 41 GAAAATTGGGTGTGGGACGTCGATTCCCTCCGAAGATTGTC GAAAATTGAGTGTGGGACGTCGATTCCCTCCGAAGATTGTC < 41bp 1 0.0953848309287672 1 0.311452031135559 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NLN ENSG00000123213 CDS Human protein_coding chr5:65105431 chr5:65105419 stopgain 1.000 1 9 hm5C_associated_SNPs_46379 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_45077 DeepMRMD:1;iRNA_m5C:0.999536712157815 45078 chr9 21818058 21818058 1 + G A UCEC 21818055 + 21818035 21818075 41 CATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTA CATGGAAGGCAGCACACCATCATACCTTCAAAGGTCAACTA < 41bp 1 0.26048352441695 1 0.200212955474854 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MTAP ENSG00000099810;ENSG00000264545 CDS Human other chr9:21818055 chr9:21818058 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_46380 0 0 1 0 1 Ribosome 1 0.500235886773692 1 0.999528226452616 hm5C_site_45078 DeepMRMD:1;iRNA_m5C:0.999528226452616 45079 chr19 18266997 18266997 1 + G T UCEC 18267008 + 18266988 18267028 41 CCCGTGATGGGGCCCCTGAGCCAGGTGAGCAGCAAGCAGGG CCCGTGATGTGGCCCCTGAGCCAGGTGAGCAGCAAGCAGGG < 41bp 1 0.63952553988661 1 0.647323966026306 experiment 0.720948920226779 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18267008 chr19:18266997 nonsynonymous SNV 0.196 1 10 hm5C_associated_SNPs_46381 0 0 0 0 1 Cytosol 1 0.500231643921093 0.705352067947388 0.999536712157815 hm5C_site_45079 DeepMRMD:0.705352067947388;iRNA_m5C:0.999536712157815 45080 chr10 75520023 75520023 1 + G A UCEC 75520010 + 75519990 75520030 41 TGGACAGAGTTTTGGAGGGCCCTCAGTGAGCCAGCCCAACC TGGACAGAGTTTTGGAGGGCCCTCAGTGAGCCAACCCAACC < 41bp 1 0.249519028230878 1 0.0877577364444733 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520010 chr10:75520023 synonymous SNV . 0 34 hm5C_associated_SNPs_46382 0 0 1 1 0 Nucleus 1 0.500232501578853 1 0.999534996842294 hm5C_site_45080 DeepMRMD:1;iRNA_m5C:0.999534996842294 45081 chr7 43990226 43990226 1 + C T UCEC 43990229 + 43990209 43990249 41 ATCTGCTCGCTGCTCTGCGACCCCAACCCCGATGACCCCCT ATCTGCTCGCTGCTCTGTGACCCCAACCCCGATGACCCCCT < 41bp 1 0.646438743882431 1 0.0683695077896118 experiment 0.707122512235139 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBE2D4 ENSG00000078967 CDS Human protein_coding chr7:43990229 chr7:43990226 synonymous SNV . 0 18 hm5C_associated_SNPs_46383 0 0 1 0 2 Cytosol 1 0.500231643923814 1 0.999536712152371 hm5C_site_45081 DeepMRMD:1;iRNA_m5C:0.999536712152371 45082 chr15 41191809 41191809 1 + C A UCEC 41191805 + 41191785 41191825 41 CCATTCCGTGAGTTTCCCAGCAACCTGGGCTACAGTGAGTT CCATTCCGTGAGTTTCCCAGCAACATGGGCTACAGTGAGTT < 41bp 1 0.615255221297502 1 0.421173274517059 experiment 0.769489557404995 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41191805 chr15:41191809 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_46384 0 0 0 0 0 chromatin 1 0.500231643937185 1 0.99953671212563 hm5C_site_45082 DeepMRMD:1;iRNA_m5C:0.99953671212563 45083 chr15 41191809 41191809 1 + C A UCEC 41191817 + 41191797 41191837 41 TTTCCCAGCAACCTGGGCTACAGTGAGTTGGCCTTCTACAC TTTCCCAGCAACATGGGCTACAGTGAGTTGGCCTTCTACAC < 41bp 1 0.412383834044966 1 0.080024778842926 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control VPS18 ENSG00000104142 CDS Human protein_coding chr15:41191817 chr15:41191809 nonsynonymous SNV 0.994 1 13 hm5C_associated_SNPs_46385 0 0 0 0 0 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_45083 DeepMRMD:1;iRNA_m5C:0.999536712157815 45084 chr6 26022034 26022034 1 + G A UCEC 26022047 + 26022027 26022067 41 CGTGGCGGTGTGAAGCGGATCTCTGGTCTGATCTACGAGGA CGTGGCGATGTGAAGCGGATCTCTGGTCTGATCTACGAGGA < 41bp 1 0.699481565165494 1 0.295874774456024 experiment 0.601036869669013 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control HIST1H4A ENSG00000196176 CDS Human other chr6:26022047 chr6:26022034 nonsynonymous SNV 0.097 0 8 hm5C_associated_SNPs_46387 0 0 1 0 0 exosome 1 0.500231629147717 1 0.999536741704567 hm5C_site_45084 DeepMRMD:1;iRNA_m5C:0.999536741704567 45085 chr15 42052714 42052714 1 + T C UCEC 42052715 + 42052695 42052735 41 TCCAAGGTTTCCAAAAGTCTCATTCTTACTCGAGTAAGTGT TCCAAGGTTTCCAAAAGTCCCATTCTTACTCGAGTAAGTGT < 41bp 1 0.0160688485907783 1 0.0652045905590057 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MGA ENSG00000174197 CDS Human protein_coding chr15:42052715 chr15:42052714 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_46388 0 0 1 0 1 Cytosol 1 0.500231643921118 1 0.999536712157763 hm5C_site_45085 DeepMRMD:1;iRNA_m5C:0.999536712157763 45086 chr1 186047328 186047328 1 + C A UCEC 186047314 + 186047294 186047334 41 ATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCCTTCAAT ATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCATTCAAT < 41bp 1 0.334640860807016 1 0.7695072889328 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control HMCN1 ENSG00000143341 CDS Human protein_coding chr1:186047314 chr1:186047328 nonsynonymous SNV 0.995 3 35 hm5C_associated_SNPs_46389 0 0 0 0 2 nucleus 1 0.500133170564525 0.4609854221344 0.99973365887095 hm5C_site_45086 DeepMRMD:0.4609854221344;iRNA_m5C:0.99973365887095 45087 chr4 39747374 39747374 1 + G T UCEC 39747383 + 39747363 39747403 41 TTTTTTTAGGAGGAAGATACCAACTAGAGATAAAAATACCA TTTTTTTAGGATGAAGATACCAACTAGAGATAAAAATACCA < 41bp 1 0.278775179882975 1 0.198065668344498 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control UBE2K ENSG00000078140 CDS Human protein_coding chr4:39747383 chr4:39747374 stopgain 0.997 1 12 hm5C_associated_SNPs_46390 0 0 1 0 2 Cytosol 1 0.500231643761681 1 0.999536712476638 hm5C_site_45087 DeepMRMD:1;iRNA_m5C:0.999536712476638 45088 chr1 192778203 192778203 1 + T C UCEC 192778185 + 192778165 192778205 41 AGCCGCAAACAGCCGGGGCTCCAGCGGGAGAACGATAATGC AGCCGCAAACAGCCGGGGCTCCAGCGGGAGAACGATAACGC < 41bp 1 0.488227446369918 1 0.688748300075531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RGS2 ENSG00000116741 CDS Human protein_coding chr1:192778185 chr1:192778203 nonsynonymous SNV 0.060 2 39 hm5C_associated_SNPs_46391 0 0 1 0 0 Nucleus 1 0.500231643921026 0.622503399848938 0.999536712157948 hm5C_site_45088 DeepMRMD:0.622503399848938;iRNA_m5C:0.999536712157948 45089 chr1 164790817 164790817 1 + G A UCEC 164790815 + 164790795 164790835 41 ATCAGCCAGACAGGAGGATACAGTGATGGACTCGCAGCCAG ATCAGCCAGACAGGAGGATACAATGATGGACTCGCAGCCAG < 41bp 1 0.570744978522593 1 0.231753200292587 experiment 0.858510042954814 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790815 chr1:164790817 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_46392 0 0 1 0 1 Ribosome 1 0.500231643920906 1 0.999536712158188 hm5C_site_45089 DeepMRMD:1;iRNA_m5C:0.999536712158188 45090 chr21 30714962 30714962 1 + T C UCEC 30714981 + 30714961 30715001 41 CTGACCGGCCTCCAGCAGTGCTGCCTCCCTGTGCCAGAGGA CCGACCGGCCTCCAGCAGTGCTGCCTCCCTGTGCCAGAGGA < 41bp 1 0.292292219471641 1 0.109923601150513 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BACH1 ENSG00000156273 CDS Human protein_coding chr21:30714981 chr21:30714962 synonymous SNV . 0 2 hm5C_associated_SNPs_46393 0 0 1 0 0 Cytosol 1 0.500231643921089 1 0.999536712157823 hm5C_site_45090 DeepMRMD:1;iRNA_m5C:0.999536712157823 45091 chr7 33014905 33014905 1 + C A UCEC 33014888 + 33014868 33014908 41 GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCG GTTCAGATTCACACCTATTTCAAGCCCCCGAGTTGCCATCG < 41bp 1 0.508489768587787 1 0.68300187587738 experiment 0.983020462824426 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014888 chr7:33014905 nonsynonymous SNV 0.999 2 38 hm5C_associated_SNPs_46394 0 0 0 0 1 Ribosome 1 0.500231495598052 0.63399624824524 0.999537008803897 hm5C_site_45091 DeepMRMD:0.63399624824524;iRNA_m5C:0.999537008803897 45092 chr7 33014905 33014905 1 + C A UCEC 33014892 + 33014872 33014912 41 AGATTCACACCTATTTCAAGCCCCCGAGTTGCCCTCGGACC AGATTCACACCTATTTCAAGCCCCCGAGTTGCCATCGGACC < 41bp 1 0.0685234119448674 1 0.0421661138534546 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014892 chr7:33014905 nonsynonymous SNV 0.999 2 34 hm5C_associated_SNPs_46395 0 0 0 0 1 Ribosome 1 0.500231643114759 1 0.999536713770482 hm5C_site_45092 DeepMRMD:1;iRNA_m5C:0.999536713770482 45093 chr13 115064359 115064359 1 + A C UCEC 115064352 + 115064332 115064372 41 AAAGGGAGAGGAACCAACCACAGAGAAACCAAAAGAAAGAG AAAGGGAGAGGAACCAACCACAGAGAACCCAAAAGAAAGAG < 41bp 1 0.584163416613314 1 0.779428362846375 experiment 0.831673166773373 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UPF3A ENSG00000169062 CDS Human protein_coding chr13:115064352 chr13:115064359 nonsynonymous SNV 0.201 1 28 hm5C_associated_SNPs_46396 0 0 0 0 1 chromatin 1 0.500231640003716 0.44114327430725 0.999536719992568 hm5C_site_45093 DeepMRMD:0.44114327430725;iRNA_m5C:0.999536719992568 45094 chr7 102107924 102107924 1 + C T UCEC 102107918 + 102107898 102107938 41 AGTCCCTCAGCGAGTTCACCCAGTGGCGGGTATGTCCCTGT AGTCCCTCAGCGAGTTCACCCAGTGGTGGGTATGTCCCTGT < 41bp 1 0.499269045183811 1 0.250370860099792 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102107918 chr7:102107924 nonsynonymous SNV 0.983 4 27 hm5C_associated_SNPs_46397 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45094 DeepMRMD:1;iRNA_m5C:0.999536712157815 45095 chr16 88505212 88505212 1 + G T UCEC 88505202 + 88505182 88505222 41 CAGCTTCCCCAGCCGGAGCCCTGCACCAGAGAGGCTCCCCG CAGCTTCCCCAGCCGGAGCCCTGCACCAGATAGGCTCCCCG < 41bp 1 0.380350187695604 1 0.857686579227448 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88505202 chr16:88505212 nonsynonymous SNV 0.007 0 31 hm5C_associated_SNPs_46399 0 0 0 0 0 exosome 1 0.500231643921093 0.284626841545104 0.999536712157815 hm5C_site_45095 DeepMRMD:0.284626841545104;iRNA_m5C:0.999536712157815 45096 chr17 78318509 78318509 1 + A G UCEC 78318498 + 78318478 78318518 41 CGTACACGTGTACCCCAGTTCAGTTTTCTTGACATCTTCCC CGTACACGTGTACCCCAGTTCAGTTTTCTTGGCATCTTCCC < 41bp 1 0.0557352795724729 1 0.0243497490882874 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78318498 chr17:78318509 nonsynonymous SNV 0.883 2 32 hm5C_associated_SNPs_46400 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45096 DeepMRMD:1;iRNA_m5C:0.999536712157815 45097 chr2 46609701 46609701 1 + C A UCEC 46609709 + 46609689 46609729 41 GCCACCCAGTACCAGGACTACAGCCTGTCGTCAGCCCACAA GCCACCCAGTACAAGGACTACAGCCTGTCGTCAGCCCACAA < 41bp 1 0.345723810705657 1 0.105517625808716 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46609709 chr2:46609701 nonsynonymous SNV 0.920 0 13 hm5C_associated_SNPs_46401 0 0 1 0 1 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_45097 DeepMRMD:1;iRNA_m5C:0.999536712157815 45098 chr19 14561740 14561740 1 + G T UCEC 14561750 + 14561730 14561770 41 CCAACCAGAAGCTGGGGCTGCTGCGGGAGGCTCTGGAGCGG CCAACCAGAATCTGGGGCTGCTGCGGGAGGCTCTGGAGCGG < 41bp 1 0.611134237424334 1 0.4442118704319 experiment 0.777731525151331 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561750 chr19:14561740 nonsynonymous SNV 0.996 2 11 hm5C_associated_SNPs_46403 0 0 1 0 1 Ribosome 1 0.500231643921258 1 0.999536712157484 hm5C_site_45098 DeepMRMD:1;iRNA_m5C:0.999536712157484 45099 chr19 14561740 14561740 1 + G T UCEC 14561760 + 14561740 14561780 41 GCTGGGGCTGCTGCGGGAGGCTCTGGAGCGGAGACTTGGGG TCTGGGGCTGCTGCGGGAGGCTCTGGAGCGGAGACTTGGGG < 41bp 1 0.247538612798638 1 0.341204106807709 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control PKN1 ENSG00000123143 CDS Human protein_coding chr19:14561760 chr19:14561740 nonsynonymous SNV 0.996 2 1 hm5C_associated_SNPs_46404 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_45099 DeepMRMD:1;iRNA_m5C:0.999536712157816 45100 chr20 49458393 49458393 1 + C A UCEC 49458380 + 49458360 49458400 41 GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCCTGCGGAG GCTGAGCGGGACCATGGGGCCTTCCCTCAGGCCATGCGGAG < 41bp 1 0.251590184093057 1 0.0608116388320923 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49458380 chr20:49458393 nonsynonymous SNV 0.072 4 34 hm5C_associated_SNPs_46405 0 0 1 0 2 exosome 1 0.500231644171602 1 0.999536711656797 hm5C_site_45100 DeepMRMD:1;iRNA_m5C:0.999536711656797 45101 chr10 103919285 103919285 1 + C T UCEC 103919298 + 103919278 103919318 41 CCAGTGACGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT CCAGTGATGAGGAAGAGGAGCAAAAAAAACCCATGAAAAAT < 41bp 1 0.576814045768515 1 0.573019921779633 experiment 0.846371908462969 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919298 chr10:103919285 synonymous SNV . 0 8 hm5C_associated_SNPs_46406 0 0 1 0 2 Nucleus 1 0.500231640579971 0.853960156440734 0.999536718840059 hm5C_site_45101 DeepMRMD:0.853960156440734;iRNA_m5C:0.999536718840059 45102 chr13 76414550 76414550 1 + C A UCEC 76414530 + 76414510 76414550 41 CTCTGATAACTGGTTAGCTTCCAGTTCCAACCATCAGTGCC CTCTGATAACTGGTTAGCTTCCAGTTCCAACCATCAGTGCA < 41bp 1 0.200425720936572 1 0.0582790672779083 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LMO7 ENSG00000136153 CDS Human protein_coding chr13:76414530 chr13:76414550 synonymous SNV . 0 41 hm5C_associated_SNPs_46407 0 0 1 0 2 Cytosol 1 0.500231650955043 1 0.999536698089915 hm5C_site_45102 DeepMRMD:1;iRNA_m5C:0.999536698089915 45103 chr2 131128288 131128288 1 + C T UCEC 131128284 + 131128264 131128304 41 TCTGTCTGCCCCAGATGATCCCACCTGACTTCAGTCTCTTT TCTGTCTGCCCCAGATGATCCCACTTGACTTCAGTCTCTTT < 41bp 1 0.0772402025805459 1 0.014413595199585 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131128284 chr2:131128288 nonsynonymous SNV 0.888 3 25 hm5C_associated_SNPs_46408 0 0 1 0 2 Cytosol 1 0.500231643921061 1 0.999536712157878 hm5C_site_45103 DeepMRMD:1;iRNA_m5C:0.999536712157878 45104 chr6 26045907 26045907 1 + T C UCEC 26045888 + 26045868 26045908 41 AGGACTTCAAAACCGACCTGCGTTTCCAGAGCTCTGCGGTG AGGACTTCAAAACCGACCTGCGTTTCCAGAGCTCTGCGGCG < 41bp 1 0.0567193785316266 1 0.0631669759750366 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control HIST1H3C ENSG00000196532 CDS Human other chr6:26045888 chr6:26045907 nonsynonymous SNV 0.835 0 40 hm5C_associated_SNPs_46409 0 0 1 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45104 DeepMRMD:1;iRNA_m5C:0.999536712157815 45105 chr7 157159212 157159212 1 + C A UCEC 157159209 + 157159189 157159229 41 TTTTTAGCTAAGAAACGGGACATCTATGACAAATATGGCAA TTTTTAGCTAAGAAACGGGACATATATGACAAATATGGCAA < 41bp 1 0.0256180917118543 1 0.0644552409648895 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control DNAJB6 ENSG00000105993 CDS Human protein_coding chr7:157159209 chr7:157159212 synonymous SNV . 0 24 hm5C_associated_SNPs_46410 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_45105 DeepMRMD:1;iRNA_m5C:0.999536712157815 45106 chr2 170804116 170804116 1 + A C UCEC 170804126 + 170804106 170804146 41 TTAGTGTCAAACATGCGACACTTTATAAACTATGTTAGAGT TTAGTGTCAACCATGCGACACTTTATAAACTATGTTAGAGT < 41bp 1 0.0679460933766822 1 0.0408710539340973 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control UBR3 ENSG00000144357 CDS Human protein_coding chr2:170804126 chr2:170804116 nonsynonymous SNV 0.999 3 11 hm5C_associated_SNPs_46411 0 0 0 1 1 Cytosol 1 0.500231643919608 1 0.999536712160785 hm5C_site_45106 DeepMRMD:1;iRNA_m5C:0.999536712160785 45107 chr20 25205859 25205859 1 + C T UCEC 25205875 + 25205855 25205895 41 GAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT GAGATACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCT < 41bp 1 0.172734212046486 1 0.0401925444602966 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205875 chr20:25205859 nonsynonymous SNV 0.048 0 5 hm5C_associated_SNPs_46413 0 0 1 0 3 Endoplasmic reticulum 1 0.500230990631018 1 0.999538018737964 hm5C_site_45107 DeepMRMD:1;iRNA_m5C:0.999538018737964 45108 chr10 103827275 103827275 1 + C T UCEC 103827278 + 103827258 103827298 41 CCGAGTTTGCCCAGCACCGCCGGCTTGATGCTCACCTCCCC CCGAGTTTGCCCAGCACTGCCGGCTTGATGCTCACCTCCCC < 41bp 1 0.638539083826338 1 0.651076316833496 experiment 0.722921832347324 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HPS6 ENSG00000166189 CDS Human protein_coding chr10:103827278 chr10:103827275 nonsynonymous SNV 0.826 4 18 hm5C_associated_SNPs_46414 0 0 1 0 0 Ribosome 1 0.500231643921094 0.697847366333008 0.999536712157813 hm5C_site_45108 DeepMRMD:0.697847366333008;iRNA_m5C:0.999536712157813 45109 chr11 73021361 73021361 1 + C A UCEC 73021363 + 73021343 73021383 41 ATGGCCCGCCGCCTGCCCCGCACCAGTGCTCTGAAGTCCAG ATGGCCCGCCGCCTGCCCAGCACCAGTGCTCTGAAGTCCAG < 41bp 1 0.469941094662845 1 0.202037066221237 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73021363 chr11:73021361 nonsynonymous SNV 0.022 1 19 hm5C_associated_SNPs_46415 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_45109 DeepMRMD:1;iRNA_m5C:0.999536712157815 45110 chr11 73021361 73021361 1 + C A UCEC 73021366 + 73021346 73021386 41 GCCCGCCGCCTGCCCCGCACCAGTGCTCTGAAGTCCAGCTC GCCCGCCGCCTGCCCAGCACCAGTGCTCTGAAGTCCAGCTC < 41bp 1 0.356164423223807 1 0.204144567251205 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73021366 chr11:73021361 nonsynonymous SNV 0.022 1 16 hm5C_associated_SNPs_46416 0 0 1 0 0 Cytosol 1 0.500231643921079 1 0.999536712157842 hm5C_site_45110 DeepMRMD:1;iRNA_m5C:0.999536712157842 45111 chr14 100367320 100367320 1 + G A UCEC 100367316 + 100367296 100367336 41 TCTGTGACATTGAATACTCTCCACGTCATTGGAATAGGTTT TCTGTGACATTGAATACTCTCCACATCATTGGAATAGGTTT < 41bp 1 0.334756551661481 1 0.402884602546692 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control EML1 ENSG00000066629 CDS Human protein_coding chr14:100367316 chr14:100367320 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_46417 0 0 1 0 2 Nucleus 1 0.50023164402456 1 0.99953671195088 hm5C_site_45111 DeepMRMD:1;iRNA_m5C:0.99953671195088 45112 chr22 26422831 26422831 1 + C T UCEC 26422843 + 26422823 26422863 41 GGCAGTGACGAGGGAAACCTCTCGCTGAGGGTTGGGGCAAA GGCAGTGATGAGGGAAACCTCTCGCTGAGGGTTGGGGCAAA < 41bp 1 0.513878505668256 1 0.703126788139343 experiment 0.972242988663489 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control MYO18B ENSG00000133454 CDS Human protein_coding chr22:26422843 chr22:26422831 synonymous SNV . 0 9 hm5C_associated_SNPs_46418 0 0 0 0 0 chromatin 1 0.500231643921092 0.593746423721314 0.999536712157815 hm5C_site_45112 DeepMRMD:0.593746423721314;iRNA_m5C:0.999536712157815 45113 chr1 39851548 39851548 1 + A G UCEC 39851531 + 39851511 39851551 41 GTGCTCATTGGTGAGCAGTACCTCAAGGATGAACTGAAGAA GTGCTCATTGGTGAGCAGTACCTCAAGGATGAACTGAGGAA < 41bp 1 0.0945213073082354 1 0.0775502920150757 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39851531 chr1:39851548 nonsynonymous SNV 1.000 1 38 hm5C_associated_SNPs_46419 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921093 1 0.999536712157814 hm5C_site_45113 DeepMRMD:1;iRNA_m5C:0.999536712157814 45114 chr1 39851548 39851548 1 + A G UCEC 39851532 + 39851512 39851552 41 TGCTCATTGGTGAGCAGTACCTCAAGGATGAACTGAAGAAG TGCTCATTGGTGAGCAGTACCTCAAGGATGAACTGAGGAAG < 41bp 1 0.368433866984285 1 0.119789183139801 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MACF1 ENSG00000127603 CDS Human protein_coding chr1:39851532 chr1:39851548 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_46420 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643925809 1 0.999536712148382 hm5C_site_45114 DeepMRMD:1;iRNA_m5C:0.999536712148382 45115 chr6 35047375 35047375 1 + A G UCEC 35047379 + 35047359 35047399 41 CTGCAGGACTACGTCCATTCCTTCTTGTCAAGTGGTTACAG CTGCAGGACTACGTCCGTTCCTTCTTGTCAAGTGGTTACAG < 41bp 1 0.164437265958126 1 0.0207889080047607 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ANKS1A ENSG00000064999 CDS Human protein_coding chr6:35047379 chr6:35047375 nonsynonymous SNV 0.986 1 17 hm5C_associated_SNPs_46421 0 0 0 0 2 Cytosol 1 0.500231661281698 1 0.999536677436603 hm5C_site_45115 DeepMRMD:1;iRNA_m5C:0.999536677436603 45116 chr20 37150281 37150281 1 + T C UCEC 37150300 + 37150280 37150320 41 CTGTGTAGGATTTTTTGTAGCAAGAAGACTGGAGAAGAGAT CCGTGTAGGATTTTTTGTAGCAAGAAGACTGGAGAAGAGAT < 41bp 1 0.573096385204077 1 0.554952323436737 experiment 0.853807229591847 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37150300 chr20:37150281 nonsynonymous SNV 1.000 4 2 hm5C_associated_SNPs_46422 0 0 1 0 1 Nucleus 1 0.500231643948223 0.890095353126526 0.999536712103554 hm5C_site_45116 DeepMRMD:0.890095353126526;iRNA_m5C:0.999536712103554 45117 chr7 158672548 158672548 1 + T C UCEC 158672551 + 158672531 158672571 41 AAAAGTAATTCATTCTCTGACAAAGGGGAAGAAAGACATAA AAAAGTAATTCATTCTCCGACAAAGGGGAAGAAAGACATAA < 41bp 1 0.18067978974394 1 0.362850606441498 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control WDR60 ENSG00000126870 CDS Human protein_coding chr7:158672551 chr7:158672548 synonymous SNV . 0 18 hm5C_associated_SNPs_46423 0 0 1 1 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45117 DeepMRMD:1;iRNA_m5C:0.999536712157815 45118 chr12 107254061 107254061 1 + A C UCEC 107254054 + 107254034 107254074 41 CTGTTTTTGCAGTGGATAGTCTGCTGAAATACACTGGCTAT CTGTTTTTGCAGTGGATAGTCTGCTGACATACACTGGCTAT < 41bp 1 0.64857512523946 1 0.538294196128845 experiment 0.702849749521079 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8B ENSG00000111785 CDS Human protein_coding chr12:107254054 chr12:107254061 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_46424 0 0 1 0 1 Nucleus 1 0.500231643812141 0.92341160774231 0.999536712375718 hm5C_site_45118 DeepMRMD:0.92341160774231;iRNA_m5C:0.999536712375718 45119 chr3 52238026 52238026 1 + A C UCEC 52238023 + 52238003 52238043 41 TCTTCTTCAAGATAACTTGCCAAAATGTAAGTCTCATTGTT TCTTCTTCAAGATAACTTGCCAACATGTAAGTCTCATTGTT < 41bp 1 0.431540201601947 1 0.0776388049125671 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52238023 chr3:52238026 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_46425 0 0 1 0 1 Cytosol 1 0.500110218130122 1 0.999779563739756 hm5C_site_45119 DeepMRMD:1;iRNA_m5C:0.999779563739756 45120 chr1 110170130 110170130 1 + A G UCEC 110170120 + 110170100 110170140 41 GACGTCAATGTGCTGATGGCCCTGATTATCAATGGCCCCAT GACGTCAATGTGCTGATGGCCCTGATTATCGATGGCCCCAT < 41bp 1 0.419182068286886 1 0.034393697977066 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110170120 chr1:110170130 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_46426 0 0 1 0 2 Cytosol 1 0.500231643920798 1 0.999536712158404 hm5C_site_45120 DeepMRMD:1;iRNA_m5C:0.999536712158404 45121 chr1 145539391 145539391 1 + T C UCEC 145539395 + 145539375 145539415 41 TAGTGCAGAACCTGACTGAACCCCCAGGCCCACCTGTGCAT TAGTGCAGAACCTGACCGAACCCCCAGGCCCACCTGTGCAT < 41bp 1 0.0523084261256256 1 0.0271371603012085 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539395 chr1:145539391 synonymous SNV . 0 17 hm5C_associated_SNPs_46427 0 0 0 0 2 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45121 DeepMRMD:1;iRNA_m5C:0.999536712157815 45122 chr7 73635986 73635986 1 + T C UCEC 73636001 + 73635981 73636021 41 TGGAGTATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA TGGAGCATTACAACTGGGGGCGGTTCTCGAAGCCCCCAGAA < 41bp 1 0.192550896666495 1 0.22772005200386 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control LAT2 ENSG00000086730 CDS Human protein_coding chr7:73636001 chr7:73635986 nonsynonymous SNV 0.002 1 6 hm5C_associated_SNPs_46428 0 0 1 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_45122 DeepMRMD:1;iRNA_m5C:0.999536712157815 45123 chr3 138341081 138341081 1 + T C UCEC 138341068 + 138341048 138341088 41 TGGATGTTCAAATTAGTGGGCAAAGAAACATTCTATGTTGG TGGATGTTCAAATTAGTGGGCAAAGAAACATTCCATGTTGG < 41bp 1 0.142992574387706 1 0.354736387729645 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control FAIM ENSG00000158234 CDS Human protein_coding chr3:138341068 chr3:138341081 nonsynonymous SNV 0.980 0 34 hm5C_associated_SNPs_46429 0 0 1 0 1 Ribosome 1 0.500231643921075 1 0.99953671215785 hm5C_site_45123 DeepMRMD:1;iRNA_m5C:0.99953671215785 45124 chr6 35438049 35438049 1 + C T UCEC 35438048 + 35438028 35438068 41 TAAATAAGGCAGGAAAGTTCCCTTCCCTGCTCACACACAAC TAAATAAGGCAGGAAAGTTCCTTTCCCTGCTCACACACAAC < 41bp 1 0.0745630928438182 1 0.0991190373897552 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438048 chr6:35438049 nonsynonymous SNV 0.984 2 22 hm5C_associated_SNPs_46430 0 0 1 0 2 Cytosol 1 0.500231583904512 1 0.999536832190977 hm5C_site_45124 DeepMRMD:1;iRNA_m5C:0.999536832190977 45125 chr14 89336481 89336481 1 + G A UCEC 89336501 + 89336481 89336521 41 GCATGCATTGGAAGCAACCACTTCTATTCTGATCAGCCAGA ACATGCATTGGAAGCAACCACTTCTATTCTGATCAGCCAGA < 41bp 1 0.253602960714976 1 0.0685049295425415 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TTC8 ENSG00000165533 CDS Human protein_coding chr14:89336501 chr14:89336481 nonsynonymous SNV 0.917 4 1 hm5C_associated_SNPs_46431 0 0 1 0 2 Nucleus 1 0.499920967107465 1 1 hm5C_site_45125 DeepMRMD:1;iRNA_m5C:1 45126 chr17 71232499 71232499 1 + T C UCEC 71232491 + 71232471 71232511 41 ATGAGCTCATTAGGTAAAATCCAAGTCATGGAGAAACAAGA ATGAGCTCATTAGGTAAAATCCAAGTCACGGAGAAACAAGA < 41bp 1 0.189116420350296 1 0.28608512878418 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71232491 chr17:71232499 nonsynonymous SNV 0.056 0 29 hm5C_associated_SNPs_46432 0 0 0 0 0 chromatin 1 0.500231635490609 1 0.999536729018782 hm5C_site_45126 DeepMRMD:1;iRNA_m5C:0.999536729018782 45127 chr9 135942540 135942540 1 + T G UCEC 135942521 + 135942501 135942541 41 GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTG GGGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACGG < 41bp 1 0.270406710554285 1 0.0648433864116669 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942521 chr9:135942540 synonymous SNV . 0 40 hm5C_associated_SNPs_46433 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45127 DeepMRMD:1;iRNA_m5C:0.999536712157815 45128 chr9 135942540 135942540 1 + T G UCEC 135942522 + 135942502 135942542 41 GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGA GGTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACGGA < 41bp 1 0.395918405426246 1 0.348529934883118 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942522 chr9:135942540 synonymous SNV . 0 39 hm5C_associated_SNPs_46434 0 0 0 0 1 exosome 1 0.500231643801048 1 0.999536712397903 hm5C_site_45128 DeepMRMD:1;iRNA_m5C:0.999536712397903 45129 chr9 135942540 135942540 1 + T G UCEC 135942523 + 135942503 135942543 41 GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACTGAT GTGATGCCGCCAGGATGGCCCAGTGTCTGAAGGTTACGGAT < 41bp 1 0.364226335792965 1 0.402944415807724 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942523 chr9:135942540 synonymous SNV . 0 38 hm5C_associated_SNPs_46435 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_45129 DeepMRMD:1;iRNA_m5C:0.999536712157816 45130 chr9 135942540 135942540 1 + T G UCEC 135942539 + 135942519 135942559 41 GGCCCAGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGC GGCCCAGTGTCTGAAGGTTACGGATCCCCGAGCCCTGACGC < 41bp 1 0.664573321761201 1 0.408039271831512 experiment 0.670853356477598 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942539 chr9:135942540 synonymous SNV . 0 22 hm5C_associated_SNPs_46436 0 0 0 0 1 exosome 1 0.500231643921053 1 0.999536712157894 hm5C_site_45130 DeepMRMD:1;iRNA_m5C:0.999536712157894 45131 chr9 135942540 135942540 1 + T G UCEC 135942544 + 135942524 135942564 41 AGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCC AGTGTCTGAAGGTTACGGATCCCCGAGCCCTGACGCTGGCC < 41bp 1 0.310132635748689 1 0.0948033928871155 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942544 chr9:135942540 synonymous SNV . 0 17 hm5C_associated_SNPs_46437 0 0 0 0 1 exosome 1 0.500231643921092 1 0.999536712157816 hm5C_site_45131 DeepMRMD:1;iRNA_m5C:0.999536712157816 Inflammatory bowel disease 45132 chr9 135942540 135942540 1 + T G UCEC 135942545 + 135942525 135942565 41 GTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCT GTGTCTGAAGGTTACGGATCCCCGAGCCCTGACGCTGGCCT < 41bp 1 0.695092118786566 1 0.185579240322113 experiment 0.609815762426868 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942545 chr9:135942540 synonymous SNV . 0 16 hm5C_associated_SNPs_46438 0 0 0 0 1 exosome 1 0.500231643921459 1 0.999536712157082 hm5C_site_45132 DeepMRMD:1;iRNA_m5C:0.999536712157082 45133 chr9 135942540 135942540 1 + T G UCEC 135942546 + 135942526 135942566 41 TGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTA TGTCTGAAGGTTACGGATCCCCGAGCCCTGACGCTGGCCTA < 41bp 1 0.563327629779742 1 0.692672371864319 experiment 0.873344740440515 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942546 chr9:135942540 synonymous SNV . 0 15 hm5C_associated_SNPs_46439 0 0 0 0 1 exosome 1 0.500231643921092 0.614655256271362 0.999536712157815 hm5C_site_45133 DeepMRMD:0.614655256271362;iRNA_m5C:0.999536712157815 45134 chr9 135942540 135942540 1 + T G UCEC 135942547 + 135942527 135942567 41 GTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTAT GTCTGAAGGTTACGGATCCCCGAGCCCTGACGCTGGCCTAT < 41bp 1 0.698682415090174 1 0.689146995544434 experiment 0.602635169819651 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control CEL ENSG00000170835 CDS Human protein_coding chr9:135942547 chr9:135942540 synonymous SNV . 0 14 hm5C_associated_SNPs_46440 0 0 0 0 1 exosome 1 0.50023164392151 0.621706008911132 0.999536712156981 hm5C_site_45134 DeepMRMD:0.621706008911132;iRNA_m5C:0.999536712156981 45135 chr9 135942540 135942540 1 + T G UCEC 135942552 + 135942532 135942572 41 AAGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGT AAGGTTACGGATCCCCGAGCCCTGACGCTGGCCTATAAGGT < 41bp 1 0.20085280469638 1 0.265565931797028 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942552 chr9:135942540 synonymous SNV . 0 9 hm5C_associated_SNPs_46441 0 0 0 0 1 exosome 1 0.500231643921093 1 0.999536712157814 hm5C_site_45135 DeepMRMD:1;iRNA_m5C:0.999536712157814 45136 chr9 135942540 135942540 1 + T G UCEC 135942553 + 135942533 135942573 41 AGGTTACTGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG AGGTTACGGATCCCCGAGCCCTGACGCTGGCCTATAAGGTG < 41bp 1 0.375951557471277 1 0.13490754365921 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CEL ENSG00000170835 CDS Human protein_coding chr9:135942553 chr9:135942540 synonymous SNV . 0 8 hm5C_associated_SNPs_46442 0 0 0 0 1 exosome 1 0.500231643752838 1 0.999536712494325 hm5C_site_45136 DeepMRMD:1;iRNA_m5C:0.999536712494325 45137 chr20 30898899 30898899 1 + T C UCEC 30898904 + 30898884 30898924 41 TTGCAGAGGAGAAGATGAGGCTGCTGAAGGAGAAAGAGAAA TTGCAGAGGAGAAGACGAGGCTGCTGAAGGAGAAAGAGAAA < 41bp 1 0.471695295608805 1 0.380978047847748 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898904 chr20:30898899 nonsynonymous SNV 1.000 0 16 hm5C_associated_SNPs_46443 0 0 0 0 3 Ribosome 1 0.500231643291028 1 0.999536713417944 hm5C_site_45137 DeepMRMD:1;iRNA_m5C:0.999536713417944 45138 chr10 72294269 72294269 1 + A G UCEC 72294256 + 72294236 72294276 41 AGCTTTCTCCGCATGGTGCCCCAGGGAAGGAGGATGGTGGA AGCTTTCTCCGCATGGTGCCCCAGGGAAGGAGGGTGGTGGA < 41bp 1 0.339846075561236 1 0.843538284301758 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PALD1 ENSG00000107719 CDS Human protein_coding chr10:72294256 chr10:72294269 nonsynonymous SNV 0.989 0 34 hm5C_associated_SNPs_46444 0 0 0 0 2 Ribosome 1 0.500231643920502 0.312923431396484 0.999536712158997 hm5C_site_45138 DeepMRMD:0.312923431396484;iRNA_m5C:0.999536712158997 45139 chr5 148743721 148743721 1 + A C UCEC 148743717 + 148743697 148743737 41 CGCCTCTGGTGGCACTATGGCATCAGCTTCCTGAGGCTGCA CGCCTCTGGTGGCACTATGGCATCCGCTTCCTGAGGCTGCA < 41bp 1 0.153653875880873 1 0.166896551847458 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148743717 chr5:148743721 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_46445 0 0 0 0 1 Ribosome 1 0.500231643925527 1 0.999536712148946 hm5C_site_45139 DeepMRMD:1;iRNA_m5C:0.999536712148946 45140 chr2 101622471 101622471 1 + A G UCEC 101622461 + 101622441 101622481 41 GTGTGCGGCTGTCCAGAAAACGTAATGAGGATGAAGATTCA GTGTGCGGCTGTCCAGAAAACGTAATGAGGGTGAAGATTCA < 41bp 1 0.681226246024427 1 0.366963148117065 experiment 0.637547507951146 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RPL31 ENSG00000071082 CDS Human protein_coding chr2:101622461 chr2:101622471 nonsynonymous SNV 1.000 2 31 hm5C_associated_SNPs_46447 0 0 1 0 2 Cytosol 1 0.50023164394085 1 0.999536712118301 hm5C_site_45140 DeepMRMD:1;iRNA_m5C:0.999536712118301 45141 chr3 111685472 111685472 1 + A G UCEC 111685463 + 111685443 111685483 41 TTTGGTGTTTCATTCAGTGCCAGCACTTCAAATATTGCTAG TTTGGTGTTTCATTCAGTGCCAGCACTTCGAATATTGCTAG < 41bp 1 0.495783252620322 1 0.409136950969696 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111685463 chr3:111685472 synonymous SNV . 0 30 hm5C_associated_SNPs_46448 0 0 0 0 1 cytosol 1 0.500220693795723 1 0.999558612408554 hm5C_site_45141 DeepMRMD:1;iRNA_m5C:0.999558612408554 45142 chr19 46519609 46519609 1 + T G UCEC 46519595 + 46519575 46519615 41 GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTTGTGAA GGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTGTGTGAA < 41bp 1 0.242500150399802 1 0.16842445731163 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46519595 chr19:46519609 nonsynonymous SNV 1.000 3 35 hm5C_associated_SNPs_46449 0 0 0 0 2 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_45142 DeepMRMD:1;iRNA_m5C:0.999536712157815 45143 chr3 108353782 108353782 1 + A G UCEC 108353763 + 108353743 108353783 41 AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAAG AAAGTTGCTGTGTTTATTTCCATAAAATTTGCTGGAAAAGG < 41bp 1 0.148575814870318 1 0.468699812889099 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108353763 chr3:108353782 nonsynonymous SNV 0.999 0 40 hm5C_associated_SNPs_46450 0 0 1 0 1 Ribosome 1 0.500238121935318 1 0.999523756129363 hm5C_site_45143 DeepMRMD:1;iRNA_m5C:0.999523756129363 45144 chr14 71444579 71444579 1 + A G UCEC 71444573 + 71444553 71444593 41 CTTCCCAAGGGGACAGACCACCTGGGAACACTGCAGAAAAC CTTCCCAAGGGGACAGACCACCTGGGGACACTGCAGAAAAC < 41bp 1 0.212363584105862 1 0.475776225328445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71444573 chr14:71444579 nonsynonymous SNV 0.001 0 27 hm5C_associated_SNPs_46451 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921083 1 0.999536712157833 hm5C_site_45144 DeepMRMD:1;iRNA_m5C:0.999536712157833 45145 chr14 71444579 71444579 1 + A G UCEC 71444574 + 71444554 71444594 41 TTCCCAAGGGGACAGACCACCTGGGAACACTGCAGAAAACA TTCCCAAGGGGACAGACCACCTGGGGACACTGCAGAAAACA < 41bp 1 0.597329454757089 1 0.803783178329468 experiment 0.805341090485822 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71444574 chr14:71444579 nonsynonymous SNV 0.001 0 26 hm5C_associated_SNPs_46452 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 0.392433643341064 0.999536712157815 hm5C_site_45145 DeepMRMD:0.392433643341064;iRNA_m5C:0.999536712157815 45146 chr3 66431203 66431203 1 + A G UCEC 66431223 - 66431203 66431243 41 TGGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGCCT TGGACTGTTACTCCAGGGGACAAGCCTTCCACCCCCAGCCC < 41bp 1 0.245036309684303 1 0.148802876472473 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66431223 chr3:66431203 synonymous SNV . 0 41 hm5C_associated_SNPs_46453 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45146 DeepMRMD:1;iRNA_m5C:0.999536712157815 45147 chr17 65722742 65722742 1 + A G UCEC 65722746 + 65722726 65722766 41 ACGTCGCAGTCCTAGGAAGTCCACTAGCAGCTTCTAAGGGT ACGTCGCAGTCCTAGGGAGTCCACTAGCAGCTTCTAAGGGT < 41bp 1 0.380100285954854 1 0.189320653676987 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NOL11 ENSG00000130935 CDS Human protein_coding chr17:65722746 chr17:65722742 synonymous SNV . 0 17 hm5C_associated_SNPs_46454 0 0 1 0 0 Nucleus 1 0.500231644593058 1 0.999536710813884 hm5C_site_45147 DeepMRMD:1;iRNA_m5C:0.999536710813884 45148 chr14 59951313 59951313 1 + T C UCEC 59951294 + 59951274 59951314 41 CTAGTGCTTCTCGAAAAAAACCTTCAGGCGGCCCATGGGTG CTAGTGCTTCTCGAAAAAAACCTTCAGGCGGCCCATGGGCG < 41bp 1 0.0570336173024592 1 0.296420753002167 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JKAMP ENSG00000050130 splicing Human protein_coding chr14:59951294 chr14:59951313 . 0.383 0 40 hm5C_associated_SNPs_46455 0 0 1 0 0 Ribosome 1 0.500231643921098 1 0.999536712157804 hm5C_site_45148 DeepMRMD:1;iRNA_m5C:0.999536712157804 45149 chr14 59951313 59951313 1 + T C UCEC 59951295 + 59951275 59951315 41 TAGTGCTTCTCGAAAAAAACCTTCAGGCGGCCCATGGGTGA TAGTGCTTCTCGAAAAAAACCTTCAGGCGGCCCATGGGCGA < 41bp 1 0.699639231810861 1 0.0975841283798218 experiment 0.600721536378277 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control JKAMP ENSG00000050130 splicing Human protein_coding chr14:59951295 chr14:59951313 . 0.383 0 39 hm5C_associated_SNPs_46456 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45149 DeepMRMD:1;iRNA_m5C:0.999536712157815 45150 chr1 93812070 93812070 1 + T G UCEC 93812080 + 93812060 93812100 41 CCTCCGTTCATTTTCTGCACCCTCTTCGCAAAGCACCCCCC CCTCCGTTCAGTTTCTGCACCCTCTTCGCAAAGCACCCCCC < 41bp 1 0.312485385146198 1 0.0147461891174316 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DR1 ENSG00000117505 UTR5 Human protein_coding chr1:93812080 chr1:93812070 . . 0 11 hm5C_associated_SNPs_46457 0 0 1 0 0 Cytosol 1 0.500231643920536 1 0.999536712158928 hm5C_site_45150 DeepMRMD:1;iRNA_m5C:0.999536712158928 45151 chr1 93812070 93812070 1 + T G UCEC 93812086 + 93812066 93812106 41 TTCATTTTCTGCACCCTCTTCGCAAAGCACCCCCCGGGATC TTCAGTTTCTGCACCCTCTTCGCAAAGCACCCCCCGGGATC < 41bp 1 0.664289043014928 1 0.722793996334076 experiment 0.671421913970144 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DR1 ENSG00000117505 UTR5 Human protein_coding chr1:93812086 chr1:93812070 . . 0 5 hm5C_associated_SNPs_46458 0 0 1 0 0 Cytosol 1 0.500231643921092 0.554412007331848 0.999536712157815 hm5C_site_45151 DeepMRMD:0.554412007331848;iRNA_m5C:0.999536712157815 45152 chr17 78346514 78346514 1 + C T UCS 78346494 + 78346474 78346514 41 CGGATCCGCCTCTGCCTCGACAGAGCTGCAGATTTCCTCTC CGGATCCGCCTCTGCCTCGACAGAGCTGCAGATTTCCTCTT < 41bp 1 0.173944115596033 1 0.664247572422028 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78346494 chr17:78346514 nonsynonymous SNV 0.010 0 41 hm5C_associated_SNPs_46459 0 0 1 0 0 Nucleus 1 0.500226728315178 0.671504855155944 0.999546543369644 hm5C_site_45152 DeepMRMD:0.671504855155944;iRNA_m5C:0.999546543369644 45153 chr2 70096956 70096956 1 + G A UCS 70096964 + 70096944 70096984 41 CAGCCATGTAGCGGATCTGTCAGTTTACAGCCTCGAAGGAG CAGCCATGTAGCAGATCTGTCAGTTTACAGCCTCGAAGGAG < 41bp 1 0.336672661886238 1 0.112870126962662 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096964 chr2:70096956 nonsynonymous SNV 1.000 2 13 hm5C_associated_SNPs_46460 0 0 1 0 1 Cytosol 1 0.500229469357213 1 0.999541061285574 hm5C_site_45153 DeepMRMD:1;iRNA_m5C:0.999541061285574 45154 chr1 110754451 110754451 1 + C T UCS 110754469 + 110754449 110754489 41 TACCGCACCGGCAAGCTGCACTGCCCCGCGGACGTGTGCGG TATCGCACCGGCAAGCTGCACTGCCCCGCGGACGTGTGCGG < 41bp 1 0.356681247746371 1 0.154862940311432 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110754469 chr1:110754451 synonymous SNV . 0 3 hm5C_associated_SNPs_46461 0 0 0 0 0 Nucleus 1 0.500241389273115 1 0.99951722145377 hm5C_site_45154 DeepMRMD:1;iRNA_m5C:0.99951722145377 45155 chr3 182597349 182597349 1 + T G UCS 182597357 + 182597337 182597377 41 TATCTCTTGCACTCAGGGAGCATGAAAAACTATTTATGGAA TATCTCTTGCACGCAGGGAGCATGAAAAACTATTTATGGAA < 41bp 1 0.537652506981086 1 0.495155870914459 experiment 0.924694986037828 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP11B ENSG00000058063 CDS Human protein_coding chr3:182597357 chr3:182597349 nonsynonymous SNV 1.000 4 13 hm5C_associated_SNPs_46462 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_45155 DeepMRMD:1;iRNA_m5C:0.999536712157815 45156 chr5 140793312 140793312 1 + C T UCS 140793307 + 140793287 140793327 41 TCTCCCTAAGAGTTCAGAGCCGTGCCAATGGCGTCAAGTAC TCTCCCTAAGAGTTCAGAGCCGTGCTAATGGCGTCAAGTAC < 41bp 1 0.143256867634917 1 0.547005176544189 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCDHGA10 ENSG00000253846 CDS Human protein_coding chr5:140793307 chr5:140793312 synonymous SNV . 0 26 hm5C_associated_SNPs_46463 0 0 0 0 0 exosome 1 0.500231643957273 0.905989646911622 0.999536712085454 hm5C_site_45156 DeepMRMD:0.905989646911622;iRNA_m5C:0.999536712085454 45157 chr5 140793312 140793312 1 + C T UCS 140793311 + 140793291 140793331 41 CCTAAGAGTTCAGAGCCGTGCCAATGGCGTCAAGTACCCGG CCTAAGAGTTCAGAGCCGTGCTAATGGCGTCAAGTACCCGG < 41bp 1 0.203523090320717 1 0.127461850643158 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control PCDHGA10 ENSG00000253846 CDS Human protein_coding chr5:140793311 chr5:140793312 synonymous SNV . 0 22 hm5C_associated_SNPs_46464 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45157 DeepMRMD:1;iRNA_m5C:0.999536712157815 45158 chr3 12531391 12531391 1 + A G UCS 12531390 + 12531370 12531410 41 CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTC CAATCCCTTTTGGTCAGGACCGTGGTCCTCTGAAAGAATTC < 41bp 1 0.380000074910828 1 0.238172292709351 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12531390 chr3:12531391 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_46466 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_45158 DeepMRMD:1;iRNA_m5C:0.999536712157815 45159 chr9 106874060 106874060 1 + A G UCS 106874053 + 106874033 106874073 41 CTTGCTGGTCAAATGATGGCCTGTAAAAATGATATAAGTAA CTTGCTGGTCAAATGATGGCCTGTAAAGATGATATAAGTAA < 41bp 1 0.431678480244045 1 0.254419028759003 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SMC2 ENSG00000136824 CDS Human protein_coding chr9:106874053 chr9:106874060 nonsynonymous SNV 1.000 1 28 hm5C_associated_SNPs_46467 0 0 1 0 0 Cytosol 1 0.50023164354831 1 0.999536712903381 hm5C_site_45159 DeepMRMD:1;iRNA_m5C:0.999536712903381 45160 chr5 176016580 176016580 1 + A G UCS 176016578 + 176016558 176016598 41 GCGGCTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCA GCGGCTGCAGTTCTCCACACCGGAGGAGGAGGTGGGCGCCA < 41bp 1 0.688082409656867 1 0.88076376914978 experiment 0.623835180686267 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016578 chr5:176016580 nonsynonymous SNV 0.045 0 23 hm5C_associated_SNPs_46468 0 0 0 0 2 Exosome 1 0.500231643898703 0.23847246170044 0.999536712202595 hm5C_site_45160 DeepMRMD:0.23847246170044;iRNA_m5C:0.999536712202595 45161 chr2 27449457 27449457 1 + G T UCS 27449451 + 27449431 27449471 41 CTCTGCCCTGGCCAGTAAGGCCACAGGTTATCCACTGGCTT CTCTGCCCTGGCCAGTAAGGCCACAGTTTATCCACTGGCTT < 41bp 1 0.179878684624033 1 0.103307127952576 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27449451 chr2:27449457 nonsynonymous SNV 0.997 4 27 hm5C_associated_SNPs_46469 0 0 1 0 2 Exosome 1 0.500231660619174 1 0.999536678761652 hm5C_site_45161 DeepMRMD:1;iRNA_m5C:0.999536678761652 45162 chr16 55523609 55523609 1 + C A UCS 55523610 + 55523590 55523630 41 AAGGTGCCCCCTGTGTCTTCCCCTTCACTTTCCTGGGCAAC AAGGTGCCCCCTGTGTCTTACCCTTCACTTTCCTGGGCAAC < 41bp 1 0.0408769256547511 1 0.167140007019043 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control MMP2 ENSG00000087245 CDS Human protein_coding chr16:55523610 chr16:55523609 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_46470 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_45162 DeepMRMD:1;iRNA_m5C:0.999536712157815 45163 chr17 42636744 42636744 1 + C T UCS 42636759 + 42636739 42636779 41 TGAGACCACCGTGTGAGGGACGCCCCCAGGCCGGAACCGCG TGAGATCACCGTGTGAGGGACGCCCCCAGGCCGGAACCGCG < 41bp 1 0.362548784794296 1 0.462381780147552 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control FZD2 ENSG00000180340 CDS Human protein_coding chr17:42636759 chr17:42636744 nonsynonymous SNV 0.990 3 6 hm5C_associated_SNPs_46471 0 0 0 0 0 exosome 1 0.500228795082376 1 0.999542409835249 hm5C_site_45163 DeepMRMD:1;iRNA_m5C:0.999542409835249 45164 chrX 73044555 73044555 1 + G A UCS 73044553 - 73044533 73044573 41 GAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGT GAGATCCAGACCGAAAGTTACTTAATTCAGCTTGCGAATGT < 41bp 1 0.143783248281228 1 0.0355349183082581 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044553 chrX:73044555 . . 0 19 hm5C_associated_SNPs_46472 0 0 1 2 0 unknown 1 0.500231649459221 1 0.999536701081557 hm5C_site_45164 DeepMRMD:1;iRNA_m5C:0.999536701081557 45165 chrX 73044555 73044555 1 + G A UCS 73044568 - 73044548 73044588 41 TGAAGTAATAGATGTGAGATCCAGACCGAAAGTCACTTAAT TGAAGTAATAGATGTGAGATCCAGACCGAAAGTTACTTAAT < 41bp 1 0.256653868657007 1 0.68556672334671 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control TSIX;XIST ENSG00000229807;ENSG00000270641 ncRNA_exonic Human other chrX:73044568 chrX:73044555 . . 0 34 hm5C_associated_SNPs_46473 0 0 1 2 0 unknown 1 0.500231643921093 0.62886655330658 0.999536712157815 hm5C_site_45165 DeepMRMD:0.62886655330658;iRNA_m5C:0.999536712157815 45166 chr9 33295250 33295250 1 + C T UCS 33295260 + 33295240 33295280 41 AGGATGACCTCAATGAAAGACCAGCAAAATCTACCTGTGAC AGGATGACCTTAATGAAAGACCAGCAAAATCTACCTGTGAC < 41bp 1 0.139913332679601 1 0.179816126823425 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33295260 chr9:33295250 synonymous SNV . 0 11 hm5C_associated_SNPs_46474 0 0 1 0 0 Nucleus 1 0.500231844053552 1 0.999536311892895 hm5C_site_45166 DeepMRMD:1;iRNA_m5C:0.999536311892895 45167 chr9 33295250 33295250 1 + C T UCS 33295261 + 33295241 33295281 41 GGATGACCTCAATGAAAGACCAGCAAAATCTACCTGTGACA GGATGACCTTAATGAAAGACCAGCAAAATCTACCTGTGACA < 41bp 1 0.651212715910579 1 0.116502195596695 experiment 0.697574568178843 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control NFX1 ENSG00000086102 CDS Human protein_coding chr9:33295261 chr9:33295250 synonymous SNV . 0 10 hm5C_associated_SNPs_46475 0 0 1 0 0 Nucleus 1 0.500231650559498 1 0.999536698881004 hm5C_site_45167 DeepMRMD:1;iRNA_m5C:0.999536698881004 45168 chr16 89620289 89620289 1 + C T UCS 89620301 + 89620281 89620321 41 GCCCATCTCCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA GCCCATCTTCTTCCCTGAGGCGCAGGAGGGCCTCATGGGCA < 41bp 1 0.67613874393565 1 0.488814413547516 experiment 0.6477225121287 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SPG7 ENSG00000197912 CDS Human protein_coding chr16:89620301 chr16:89620289 nonsynonymous SNV 0.572 5 9 hm5C_associated_SNPs_46476 0 0 1 0 2 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_45168 DeepMRMD:1;iRNA_m5C:0.999536712157815 45169 chr7 129950692 129950692 1 + G C UCS 129950672 + 129950652 129950692 41 CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGG CTCCGAAGTGTACCATGGACCCCACGCCAATTCGGAAGTGC < 41bp 1 0.100307724782336 1 0.0367678999900818 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950672 chr7:129950692 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_46477 0 0 0 0 1 Endoplasmic reticulum 1 0.500231643920496 1 0.999536712159007 hm5C_site_45169 DeepMRMD:1;iRNA_m5C:0.999536712159007 45170 chr17 21319329 21319329 1 + G A UCS 21319343 + 21319323 21319363 41 TGTGGAGGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG TGTGGAAGCCCATGTGCGCGCGCAGCTCATCAAGCCGCGGG < 41bp 1 0.671620316450147 1 0.43478661775589 experiment 0.656759367099706 Functional Loss 31061524;GSE122267;BS-seq with improved protocol;Muscle;Control KCNJ12;KCNJ18 ENSG00000184185 CDS Human protein_coding chr17:21319343 chr17:21319329 synonymous SNV . 0 7 hm5C_associated_SNPs_46478 0 0 0 0 0 unknown 1 0.500231643127452 1 0.999536713745096 hm5C_site_45170 DeepMRMD:1;iRNA_m5C:0.999536713745096 45171 chr2 207024682 207024682 1 + G A UCS 207024663 + 207024643 207024683 41 GCGCCCACAATTTGCGCGCTCTCTTTCTGCTGCTCCCCAGC GCGCCCACAATTTGCGCGCTCTCTTTCTGCTGCTCCCCAAC < 41bp 1 0.385742108004596 1 0.0206138789653778 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 splicing Human protein_coding chr2:207024663 chr2:207024682 . . 0 40 hm5C_associated_SNPs_46480 0 0 1 0 1 chromatin 1 0.500231643799495 1 0.999536712401011 hm5C_site_45171 DeepMRMD:1;iRNA_m5C:0.999536712401011 45172 chr2 207024682 207024682 1 + G A UCS 207024693 + 207024673 207024713 41 TGCTCCCCAGCTCTCGGATACAGCCGACACCATGGGTTTCG TGCTCCCCAACTCTCGGATACAGCCGACACCATGGGTTTCG < 41bp 1 0.51404510878087 1 0.173482865095139 experiment 0.971909782438261 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EEF1B2 ENSG00000114942 splicing Human protein_coding chr2:207024693 chr2:207024682 . . 0 10 hm5C_associated_SNPs_46482 0 0 1 0 1 chromatin 1 0.500231643921092 1 0.999536712157815 hm5C_site_45172 DeepMRMD:1;iRNA_m5C:0.999536712157815 45173 chr18 7955218 7955218 1 + T C UCS 7955214 + 7955194 7955234 41 ACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTG ACTCCATCAATGGGGATGGGCCCACTGTGGCCCGAGAGGTG < 41bp 1 0.0828613367108878 1 0.156250149011612 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955214 chr18:7955218 nonsynonymous SNV 0.971 4 25 hm5C_associated_SNPs_46483 0 0 0 0 1 Nucleus 1 0.500231643928784 1 0.999536712142432 hm5C_site_45173 DeepMRMD:1;iRNA_m5C:0.999536712142432 45174 chr18 7955218 7955218 1 + T C UCS 7955215 + 7955195 7955235 41 CTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGG CTCCATCAATGGGGATGGGCCCACTGTGGCCCGAGAGGTGG < 41bp 1 0.153270238977937 1 0.174473404884338 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955215 chr18:7955218 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_46484 0 0 0 0 1 Nucleus 1 0.500231643920355 1 0.999536712159291 hm5C_site_45174 DeepMRMD:1;iRNA_m5C:0.999536712159291 45175 chr18 7955218 7955218 1 + T C UCS 7955216 + 7955196 7955236 41 TCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGA TCCATCAATGGGGATGGGCCCACTGTGGCCCGAGAGGTGGA < 41bp 1 0.26839443449243 1 0.344220638275146 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955216 chr18:7955218 nonsynonymous SNV 0.971 4 23 hm5C_associated_SNPs_46485 0 0 0 0 1 Nucleus 1 0.500231644015158 1 0.999536711969685 hm5C_site_45175 DeepMRMD:1;iRNA_m5C:0.999536711969685 45176 chr18 7955218 7955218 1 + T C UCS 7955224 + 7955204 7955244 41 TGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCA TGGGGATGGGCCCACTGTGGCCCGAGAGGTGGAGTACTGCA < 41bp 1 0.582494567201372 1 0.196767061948776 experiment 0.835010865597256 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955224 chr18:7955218 nonsynonymous SNV 0.971 4 15 hm5C_associated_SNPs_46486 0 0 0 0 1 Nucleus 1 0.500231643782103 1 0.999536712435794 hm5C_site_45176 DeepMRMD:1;iRNA_m5C:0.999536712435794 45177 chr18 7955218 7955218 1 + T C UCS 7955225 + 7955205 7955245 41 GGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCAC GGGGATGGGCCCACTGTGGCCCGAGAGGTGGAGTACTGCAC < 41bp 1 0.296173829314855 1 0.526147544384003 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955225 chr18:7955218 nonsynonymous SNV 0.971 4 14 hm5C_associated_SNPs_46487 0 0 0 0 1 Nucleus 1 0.500231625272505 0.947704911231994 0.999536749454991 hm5C_site_45177 DeepMRMD:0.947704911231994;iRNA_m5C:0.999536749454991 45178 chr18 7955218 7955218 1 + T C UCS 7955226 + 7955206 7955246 41 GGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACG GGGATGGGCCCACTGTGGCCCGAGAGGTGGAGTACTGCACG < 41bp 1 0.691104469487091 1 0.567152202129364 experiment 0.617791061025817 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:7955226 chr18:7955218 nonsynonymous SNV 0.971 4 13 hm5C_associated_SNPs_46488 0 0 0 0 1 Nucleus 1 0.500231640790208 0.865695595741272 0.999536718419584 hm5C_site_45178 DeepMRMD:0.865695595741272;iRNA_m5C:0.999536718419584 45179 chr12 124102387 124102387 1 + T C UCS 124102395 + 124102375 124102415 41 CCCATGGAAGAGTCATACATCAATTTCCTTGCAATTAACCA CCCATGGAAGAGCCATACATCAATTTCCTTGCAATTAACCA < 41bp 1 0.157487373577913 1 0.151721030473709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control DDX55 ENSG00000111364 CDS Human protein_coding chr12:124102395 chr12:124102387 nonsynonymous SNV 0.968 1 13 hm5C_associated_SNPs_46489 0 0 1 0 2 Nucleus 1 0.500231643910208 1 0.999536712179585 hm5C_site_45179 DeepMRMD:1;iRNA_m5C:0.999536712179585 45180 chr1 151633298 151633298 1 + A C UCS 151633305 + 151633285 151633325 41 CGAGTAATTGGTGAGAGTGACATCATGCAGGAATTCCTATC CGAGTAATTGGTGCGAGTGACATCATGCAGGAATTCCTATC < 41bp 1 0.35516781789671 1 0.273854434490204 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SNX27 ENSG00000143376 CDS Human protein_coding chr1:151633305 chr1:151633298 nonsynonymous SNV 1.000 4 14 hm5C_associated_SNPs_46490 0 0 1 0 1 Ribosome 1 0.500231643928621 1 0.999536712142759 hm5C_site_45180 DeepMRMD:1;iRNA_m5C:0.999536712142759 45181 chr11 94229989 94229989 1 + C A UCS 94229975 + 94229955 94229995 41 ACATGGACACCTTATTCCTACTGGTACTCAAAGTCTTTGGG ACATGGACACCTTATTCCTACTGGTACTCAAAGTATTTGGG < 41bp 1 0.525228171968258 1 0.0388925075531006 experiment 0.949543656063484 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ANKRD49 ENSG00000168876 CDS Human protein_coding chr11:94229975 chr11:94229989 nonsynonymous SNV 1.000 2 35 hm5C_associated_SNPs_46491 0 0 1 0 0 exosome 1 0.500231225530588 1 0.999537548938825 hm5C_site_45181 DeepMRMD:1;iRNA_m5C:0.999537548938825 45182 chr1 95657239 95657239 1 + T C UCS 95657252 + 95657232 95657272 41 TTCCGTGTATGGAACAGAACCCTACATAAGGCTTGGAGTTT TTCCGTGCATGGAACAGAACCCTACATAAGGCTTGGAGTTT < 41bp 1 0.0317553084700644 1 0.177334427833557 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TMEM56 ENSG00000152078 CDS Human protein_coding chr1:95657252 chr1:95657239 nonsynonymous SNV 0.939 2 8 hm5C_associated_SNPs_46493 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_45182 DeepMRMD:1;iRNA_m5C:0.999536712157815 45183 chr3 45537860 45537860 1 + A G UCS 45537850 + 45537830 45537870 41 CTACTTCAGATACACTGACCCTCATAATCCACACAGGTAAA CTACTTCAGATACACTGACCCTCATAATCCGCACAGGTAAA < 41bp 1 0.140804023639432 1 0.0423054695129395 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control LARS2 ENSG00000011376 CDS Human protein_coding chr3:45537850 chr3:45537860 synonymous SNV . 0 31 hm5C_associated_SNPs_46494 0 0 0 0 2 Endoplasmic reticulum 1 0.500231752189557 1 0.999536495620886 hm5C_site_45183 DeepMRMD:1;iRNA_m5C:0.999536495620886 45184 chr19 1453536 1453536 1 + C T UCS 1453533 + 1453513 1453553 41 GAGGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAG GAGGGCAGCCCAGTACACGGCTCTGGGCCCTCCAAGGACAG < 41bp 1 0.163462775202715 1 0.199636876583099 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453533 chr19:1453536 synonymous SNV . 0 24 hm5C_associated_SNPs_46495 0 0 0 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45184 DeepMRMD:1;iRNA_m5C:0.999536712157815 45185 chr19 1453536 1453536 1 + C T UCS 1453535 + 1453515 1453555 41 GGGCAGCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCT GGGCAGCCCAGTACACGGCTCTGGGCCCTCCAAGGACAGCT < 41bp 1 0.346038671249998 1 0.530401349067688 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453535 chr19:1453536 synonymous SNV . 0 22 hm5C_associated_SNPs_46496 0 0 0 0 1 nucleolus 1 0.500231643921092 0.939197301864624 0.999536712157815 hm5C_site_45185 DeepMRMD:0.939197301864624;iRNA_m5C:0.999536712157815 45186 chr19 1453536 1453536 1 + C T UCS 1453540 + 1453520 1453560 41 GCCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGG GCCCAGTACACGGCTCTGGGCCCTCCAAGGACAGCTTTGGG < 41bp 1 0.0169285384830692 1 0.0413437187671661 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453540 chr19:1453536 synonymous SNV . 0 17 hm5C_associated_SNPs_46497 0 0 0 0 1 nucleolus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45186 DeepMRMD:1;iRNA_m5C:0.999536712157815 45187 chr19 1453536 1453536 1 + C T UCS 1453541 + 1453521 1453561 41 CCCAGTACACGGCTCCGGGCCCTCCAAGGACAGCTTTGGGG CCCAGTACACGGCTCTGGGCCCTCCAAGGACAGCTTTGGGG < 41bp 1 0.015292196039987 1 0.0944604873657227 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient APC2 ENSG00000115266 CDS Human protein_coding chr19:1453541 chr19:1453536 synonymous SNV . 0 16 hm5C_associated_SNPs_46498 0 0 0 0 1 nucleolus 1 0.50023164392104 1 0.99953671215792 hm5C_site_45187 DeepMRMD:1;iRNA_m5C:0.99953671215792 45188 chr11 209947 209947 1 + C A UCS 209927 + 209907 209947 41 GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCC GCTCCTTCCTTCCCAAGAGACTGAGCGGGCCATGGAGATCA < 41bp 1 0.574401931601423 1 0.152616828680038 experiment 0.851196136797153 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control RIC8A ENSG00000177963 CDS Human protein_coding chr11:209927 chr11:209947 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_46499 0 0 1 0 1 Ribosome 1 0.50024886338062 1 0.999502273238759 hm5C_site_45188 DeepMRMD:1;iRNA_m5C:0.999502273238759 45189 chr2 75882241 75882241 1 + A C UCS 75882235 + 75882215 75882255 41 CCTGGTCTAAACGCTGGGAACGTCCAAATTTTAATATTAAA CCTGGTCTAAACGCTGGGAACGTCCACATTTTAATATTAAA < 41bp 1 0.0672027887374371 1 0.134790271520615 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MRPL19 ENSG00000115364 CDS Human protein_coding chr2:75882235 chr2:75882241 nonsynonymous SNV 0.804 1 27 hm5C_associated_SNPs_46500 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_45189 DeepMRMD:1;iRNA_m5C:0.999536712157815 45190 chr11 47297547 47297547 1 + C T UCS 47297563 + 47297543 47297583 41 CTATCGATTGCTGCGCTCCCCAGTACCCGTCTCTGGGCAGA CTATTGATTGCTGCGCTCCCCAGTACCCGTCTCTGGGCAGA < 41bp 1 0.51984815781281 1 0.567916750907898 experiment 0.960303684374379 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control MADD ENSG00000110514 CDS Human protein_coding chr11:47297563 chr11:47297547 stopgain 0.998 1 5 hm5C_associated_SNPs_46501 0 0 1 0 1 Nucleus 1 0.500231643923762 0.864166498184204 0.999536712152476 hm5C_site_45190 DeepMRMD:0.864166498184204;iRNA_m5C:0.999536712152476 45191 chr14 51057742 51057742 1 + A C UCS 51057723 + 51057703 51057743 41 TTTTTCATGGAGAGGTGGATCTGAGCGAGAGACCACAGGAA TTTTTCATGGAGAGGTGGATCTGAGCGAGAGACCACAGGCA < 41bp 1 0.641863658067006 1 0.179550170898438 experiment 0.716272683865989 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ATL1 ENSG00000198513 CDS Human protein_coding chr14:51057723 chr14:51057742 synonymous SNV . 0 40 hm5C_associated_SNPs_46502 0 0 1 0 2 chromatin 1 0.500231639404345 1 0.99953672119131 hm5C_site_45191 DeepMRMD:1;iRNA_m5C:0.99953672119131 45192 chr11 126279209 126279209 1 + A C UCS 126279193 + 126279173 126279213 41 GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAATCCT GTTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCACTCCT < 41bp 1 0.402263054846272 1 0.216026872396469 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126279193 chr11:126279209 nonsynonymous SNV 0.979 0 37 hm5C_associated_SNPs_46503 0 0 1 0 2 Ribosome 1 0.500231643921977 1 0.999536712156046 hm5C_site_45192 DeepMRMD:1;iRNA_m5C:0.999536712156046 45193 chr22 42273340 42273340 1 + T G UCS 42273332 + 42273312 42273352 41 TCCTGTGCCTCTCCTTTAACCCCCTGACTTCCCTGCTGCAG TCCTGTGCCTCTCCTTTAACCCCCTGACGTCCCTGCTGCAG < 41bp 1 0.26482152096788 1 0.0382526218891144 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42273332 chr22:42273340 synonymous SNV . 0 29 hm5C_associated_SNPs_46504 0 0 1 0 1 Ribosome 1 0.500231643920997 1 0.999536712158007 hm5C_site_45193 DeepMRMD:1;iRNA_m5C:0.999536712158007 45194 chr10 102242045 102242045 1 + G T UCS 102242029 + 102242009 102242049 41 CTCCTAGCTCTCTCCCCAGGCGGTGAAGGGCACCATGAAAC CTCCTAGCTCTCTCCCCAGGCGGTGAAGGGCACCATTAAAC < 41bp 1 0.403637662016759 1 0.683289051055908 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control WNT8B ENSG00000075290 CDS Human protein_coding chr10:102242029 chr10:102242045 nonsynonymous SNV 1.000 2 37 hm5C_associated_SNPs_46505 0 0 0 0 1 exosome 1 0.500231643921092 0.633421897888184 0.999536712157815 hm5C_site_45194 DeepMRMD:0.633421897888184;iRNA_m5C:0.999536712157815 45195 chr1 198231762 198231762 1 + C A UCS 198231746 + 198231726 198231766 41 AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTCTTAA AAAGCACGTGCTGATTGCATCAAAGAAATAGATCTTATTAA < 41bp 1 0.299555967474805 1 0.663023591041565 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231746 chr1:198231762 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_46506 0 0 0 0 2 Nucleus 1 0.50023068866901 0.67395281791687 0.99953862266198 hm5C_site_45195 DeepMRMD:0.67395281791687;iRNA_m5C:0.99953862266198 45196 chr11 12243276 12243276 1 + G A UCS 12243280 + 12243260 12243300 41 AAGAGCTGGAACCAGGGCACCCCTCCCCTGGAGCTGCTGGC AAGAGCTGGAACCAGGACACCCCTCCCCTGGAGCTGCTGGC < 41bp 1 0.0428645982407382 1 0.123917520046234 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12243280 chr11:12243276 nonsynonymous SNV 0.905 4 17 hm5C_associated_SNPs_46507 0 0 1 0 2 Ribosome 1 0.500231642815564 1 0.999536714368871 hm5C_site_45196 DeepMRMD:1;iRNA_m5C:0.999536714368871 45197 chr19 11114067 11114067 1 + G T UCS 11114055 + 11114035 11114075 41 TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGT TCTGATAGTGAAGAAAGTGGCTCAGAAGAAGATGAAGAGGT < 41bp 1 0.249374267177946 1 0.241566956043243 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control|30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114055 chr19:11114067 nonsynonymous SNV 1.000 1 33 hm5C_associated_SNPs_46508 0 0 1 0 2 Nucleus 1 0.500231643654908 1 0.999536712690184 hm5C_site_45197 DeepMRMD:1;iRNA_m5C:0.999536712690184 45198 chr19 11114067 11114067 1 + G T UCS 11114057 + 11114037 11114077 41 TGATAGTGAAGAAAGTGGCTCAGAAGAAGAGGAAGAGGTAA TGATAGTGAAGAAAGTGGCTCAGAAGAAGATGAAGAGGTAA < 41bp 1 0.308759633948511 1 0.37165692448616 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114057 chr19:11114067 nonsynonymous SNV 1.000 1 31 hm5C_associated_SNPs_46509 0 0 1 0 2 Nucleus 1 0.500231643921098 1 0.999536712157805 hm5C_site_45198 DeepMRMD:1;iRNA_m5C:0.999536712157805 45199 chr21 17250147 17250147 1 + A G UCS 17250131 + 17250111 17250151 41 TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAATCTG TAAGAAATTAAATGAGCAAGCCGCAGAACTCTTCGAGTCTG < 41bp 1 0.550826315587796 1 0.466736823320389 experiment 0.898347368824407 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control USP25 ENSG00000155313 CDS Human protein_coding chr21:17250131 chr21:17250147 synonymous SNV . 0 37 hm5C_associated_SNPs_46510 0 0 1 0 1 Cytosol 1 0.500231488652329 1 0.999537022695342 hm5C_site_45199 DeepMRMD:1;iRNA_m5C:0.999537022695342 45200 chr12 64173847 64173847 1 + C G UCS 64173833 + 64173813 64173853 41 TACCACGTCTTCTTCGGGCGCCGCCGCCAGGCGCCGGCCGG TACCACGTCTTCTTCGGGCGCCGCCGCCAGGCGCGGGCCGG < 41bp 1 0.41572330767896 1 0.145813256502151 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64173833 chr12:64173847 nonsynonymous SNV 0.207 0 35 hm5C_associated_SNPs_46511 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921128 1 0.999536712157744 hm5C_site_45200 DeepMRMD:1;iRNA_m5C:0.999536712157744 45201 chr19 19627058 19627058 1 + C T UCS 19627040 + 19627020 19627060 41 GGGACCGGAAGTGTGGGATACTGCGAGTATGGCGGCGTCAA GGGACCGGAAGTGTGGGATACTGCGAGTATGGCGGCGTTAA < 41bp 1 0.64040545354633 1 0.333201050758362 experiment 0.71918909290734 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19627040 chr19:19627058 nonsynonymous SNV 0.201 1 39 hm5C_associated_SNPs_46512 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_45201 DeepMRMD:1;iRNA_m5C:0.999536712157815 45202 chr2 109104168 109104168 1 + C A UCS 109104161 + 109104141 109104181 41 TTTAAATGTTATAGGCAGAACAAGCTACTGTAACCTCTGAA TTTAAATGTTATAGGCAGAACAAGCTAATGTAACCTCTGAA < 41bp 1 0.189800229005264 1 0.374947816133499 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GCC2 ENSG00000135968 CDS Human protein_coding chr2:109104161 chr2:109104168 nonsynonymous SNV 0.949 0 28 hm5C_associated_SNPs_46513 0 0 1 0 1 chromatin 1 0.500232508656207 1 0.999534982687587 hm5C_site_45202 DeepMRMD:1;iRNA_m5C:0.999534982687587 45203 chr12 50834308 50834308 1 + C G UCS 50834317 + 50834297 50834337 41 TATATCACTTTCCAGTCAGACACAGATGCACAACAGGTAAG TATATCACTTTGCAGTCAGACACAGATGCACAACAGGTAAG < 41bp 1 0.579639544935193 1 0.425335198640823 experiment 0.840720910129614 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control LARP4 ENSG00000161813 CDS Human protein_coding chr12:50834317 chr12:50834308 nonsynonymous SNV 1.000 4 12 hm5C_associated_SNPs_46514 0 0 1 0 2 Nucleus 1 0.500231644797628 1 0.999536710404744 hm5C_site_45203 DeepMRMD:1;iRNA_m5C:0.999536710404744 45204 chr10 135000063 135000063 1 + G A UCS 135000066 + 135000046 135000086 41 TTCACACCCCAGCCAGGGGCCAGCAGAGGCCCCTGCAGACC TTCACACCCCAGCCAGGAGCCAGCAGAGGCCCCTGCAGACC < 41bp 1 0.647544584472934 1 0.866290211677551 experiment 0.704910831054133 Functional Loss 31061524;GSE122269;BS-seq with improved protocol;Testis;Control KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135000066 chr10:135000063 nonsynonymous SNV 0.000 0 18 hm5C_associated_SNPs_46515 0 0 0 0 0 Endoplasmic reticulum 1 0.500231643921089 0.267419576644898 0.999536712157822 hm5C_site_45204 DeepMRMD:0.267419576644898;iRNA_m5C:0.999536712157822 45205 chr7 99722494 99722494 1 + G A UCS 99722514 + 99722494 99722534 41 GACCGAGAAGATCTTTGACCCTTGCCTTTGAGCCCCCAGGA AACCGAGAAGATCTTTGACCCTTGCCTTTGAGCCCCCAGGA < 41bp 1 0.502662642504817 1 0.208709388971329 experiment 0.994674714990366 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99722514 chr7:99722494 nonsynonymous SNV 0.668 2 1 hm5C_associated_SNPs_46516 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_45205 DeepMRMD:1;iRNA_m5C:0.999536712157815 45206 chr7 2395011 2395011 1 + C G UCS 2394994 + 2394974 2395014 41 CCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCCCTCCTT CCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCCCTGCTT < 41bp 1 0.687415023354789 1 0.501115083694458 experiment 0.625169953290422 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2394994 chr7:2395011 nonsynonymous SNV 0.982 3 38 hm5C_associated_SNPs_46517 0 0 1 0 1 Ribosome 1 0.50023164386661 0.997769832611084 0.999536712266781 hm5C_site_45206 DeepMRMD:0.997769832611084;iRNA_m5C:0.999536712266781 45207 chr7 2395011 2395011 1 + C G UCS 2395007 + 2394987 2395027 41 AGAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAG AGAACGGCGACGCGGACGAGCCCTGCTTCAGCGACCCCGAG < 41bp 1 0.226970684757546 1 0.0942867398262024 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395007 chr7:2395011 nonsynonymous SNV 0.982 3 25 hm5C_associated_SNPs_46518 0 0 1 0 1 Ribosome 1 0.500231677908071 1 0.999536644183858 hm5C_site_45207 DeepMRMD:1;iRNA_m5C:0.999536644183858 45208 chr7 2395011 2395011 1 + C G UCS 2395008 + 2394988 2395028 41 GAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGG GAACGGCGACGCGGACGAGCCCTGCTTCAGCGACCCCGAGG < 41bp 1 0.284404904785753 1 0.0989010334014893 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395008 chr7:2395011 nonsynonymous SNV 0.982 3 24 hm5C_associated_SNPs_46519 0 0 1 0 1 Ribosome 1 0.500231643899612 1 0.999536712200777 hm5C_site_45208 DeepMRMD:1;iRNA_m5C:0.999536712200777 45209 chr7 2395011 2395011 1 + C G UCS 2395015 + 2394995 2395035 41 GACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACTTCGT GACGCGGACGAGCCCTGCTTCAGCGACCCCGAGGACTTCGT < 41bp 1 0.674357585267084 1 0.834522187709808 experiment 0.651284829465831 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395015 chr7:2395011 nonsynonymous SNV 0.982 3 17 hm5C_associated_SNPs_46520 0 0 1 0 1 Ribosome 1 0.500231644107332 0.330955624580384 0.999536711785335 hm5C_site_45209 DeepMRMD:0.330955624580384;iRNA_m5C:0.999536711785335 45210 chr7 2395011 2395011 1 + C G UCS 2395021 + 2395001 2395041 41 GACGAGCCCTCCTTCAGCGACCCCGAGGACTTCGTGGACGA GACGAGCCCTGCTTCAGCGACCCCGAGGACTTCGTGGACGA < 41bp 1 0.479252965765266 1 0.105677157640457 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2395021 chr7:2395011 nonsynonymous SNV 0.982 3 11 hm5C_associated_SNPs_46521 0 0 1 0 1 Ribosome 1 0.500231643921229 1 0.999536712157542 hm5C_site_45210 DeepMRMD:1;iRNA_m5C:0.999536712157542 45211 chr16 88780614 88780614 1 + C T UCS 88780612 + 88780592 88780632 41 AGGCTGCAGACCCAGTTCCCCTCCACTGTCAGCACTGTGTA AGGCTGCAGACCCAGTTCCCCTTCACTGTCAGCACTGTGTA < 41bp 1 0.40851999512867 1 0.224083065986633 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780612 chr16:88780614 nonsynonymous SNV 0.909 3 23 hm5C_associated_SNPs_46522 0 0 1 0 2 Cytosol 1 0.500192420535093 1 0.999615158929813 hm5C_site_45211 DeepMRMD:1;iRNA_m5C:0.999615158929813 45212 chr20 36488358 36488358 1 + C T UCS 36488378 + 36488358 36488398 41 CGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG TGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG < 41bp 1 0.39865341393621 1 0.044287383556366 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488378 chr20:36488358 nonsynonymous SNV 0.997 4 1 hm5C_associated_SNPs_46523 0 0 1 6 2 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_45212 DeepMRMD:1;iRNA_m5C:0.999536712157815 45213 chr20 35862430 35862430 1 + G T UCS 35862428 + 35862408 35862448 41 CTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTC CTCCCCATCATTCAGTGGATCCTGATTGGTGCCAATGTCTC < 41bp 1 0.186632409214473 1 0.152963221073151 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862428 chr20:35862430 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_46524 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45213 DeepMRMD:1;iRNA_m5C:0.999536712157815 45214 chr14 73637521 73637521 1 + G A UCS 73637529 + 73637509 73637549 41 ACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTT ACAATAGAGAACAGCAGGAGCACAACGACAGACGGAGCCTT < 41bp 1 0.580812006202589 1 0.280585050582886 experiment 0.838375987594822 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637529 chr14:73637521 nonsynonymous SNV 0.410 1 13 hm5C_associated_SNPs_46525 2 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45214 DeepMRMD:1;iRNA_m5C:0.999536712157815 not provided not provided 45215 chr14 73637521 73637521 1 + G A UCS 73637531 + 73637511 73637551 41 AATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGG AATAGAGAACAGCAGGAGCACAACGACAGACGGAGCCTTGG < 41bp 1 0.604864981513837 1 0.266449153423309 experiment 0.790270036972326 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637531 chr14:73637521 nonsynonymous SNV 0.410 1 11 hm5C_associated_SNPs_46526 2 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45215 DeepMRMD:1;iRNA_m5C:0.999536712157815 not provided not provided 45216 chr9 91083304 91083304 1 + G A UCS 91083287 + 91083267 91083307 41 TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCGATG TTTTTTTTTTTAATCCCCAGCGACATCTCGAATCAGCAATG < 41bp 1 0.339542331642261 1 0.493019551038742 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91083287 chr9:91083304 nonsynonymous SNV 0.975 2 38 hm5C_associated_SNPs_46527 0 0 1 0 1 Cytosol 1 0.500231643920894 1 0.999536712158213 hm5C_site_45216 DeepMRMD:1;iRNA_m5C:0.999536712158213 45217 chr18 8114820 8114820 1 + C T UCS 8114803 + 8114783 8114823 41 ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCACAAA ACACAGGAAACCAAAATAGACTGTGTCCAAGTGGCCATAAA < 41bp 1 0.145571226295435 1 0.033341109752655 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PTPRM ENSG00000173482 CDS Human protein_coding chr18:8114803 chr18:8114820 nonsynonymous SNV 1.000 4 38 hm5C_associated_SNPs_46528 0 0 1 0 2 Nucleus 1 0.500229980343669 1 0.999540039312661 hm5C_site_45217 DeepMRMD:1;iRNA_m5C:0.999540039312661 45218 chr7 106826902 106826902 1 + C T UCS 106826904 + 106826884 106826924 41 TGGCCTTCAACTGTCTGGCACTGTTTTTTGAAAGGTAAAAC TGGCCTTCAACTGTCTGGTACTGTTTTTTGAAAGGTAAAAC < 41bp 1 0.101886319731135 1 0.0514753758907318 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826904 chr7:106826902 nonsynonymous SNV 0.969 4 19 hm5C_associated_SNPs_46529 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45218 DeepMRMD:1;iRNA_m5C:0.999536712157815 45219 chr6 31594934 31594934 1 + C T UCS 31594939 + 31594919 31594959 41 CTACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCC CTACCCCCACCTCACTGGGGCCCCGCCGGGAACTGGGGCCC < 41bp 1 0.297622357432763 1 0.0890676975250244 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594939 chr6:31594934 nonsynonymous SNV 0.997 3 16 hm5C_associated_SNPs_46531 0 0 1 0 1 Ribosome 1 0.500231643640358 1 0.999536712719285 hm5C_site_45219 DeepMRMD:1;iRNA_m5C:0.999536712719285 45220 chr6 31594934 31594934 1 + C T UCS 31594940 + 31594920 31594960 41 TACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCC TACCCCCACCTCACTGGGGCCCCGCCGGGAACTGGGGCCCC < 41bp 1 0.273964310162999 1 0.12081977725029 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594940 chr6:31594934 nonsynonymous SNV 0.997 3 15 hm5C_associated_SNPs_46532 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45220 DeepMRMD:1;iRNA_m5C:0.999536712157815 45221 chr6 31594934 31594934 1 + C T UCS 31594941 + 31594921 31594961 41 ACCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCC ACCCCCACCTCACTGGGGCCCCGCCGGGAACTGGGGCCCCC < 41bp 1 0.327057123280343 1 0.142692536115646 experiment 1 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594941 chr6:31594934 nonsynonymous SNV 0.997 3 14 hm5C_associated_SNPs_46533 0 0 1 0 1 Ribosome 1 0.50023164391572 1 0.999536712168559 hm5C_site_45221 DeepMRMD:1;iRNA_m5C:0.999536712168559 45222 chr6 31594934 31594934 1 + C T UCS 31594942 + 31594922 31594962 41 CCCCCACCTCACCGGGGCCCCGCCGGGAACTGGGGCCCCCC CCCCCACCTCACTGGGGCCCCGCCGGGAACTGGGGCCCCCC < 41bp 1 0.5742496996521 1 0.470107853412628 experiment 0.8515006006958 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control|28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594942 chr6:31594934 nonsynonymous SNV 0.997 3 13 hm5C_associated_SNPs_46534 0 0 1 0 1 Ribosome 1 0.500231644927583 1 0.999536710144834 hm5C_site_45222 DeepMRMD:1;iRNA_m5C:0.999536710144834 45223 chr14 102455116 102455116 1 + A G UCS 102455097 + 102455077 102455117 41 TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAAGAT TGAGAGCTTGGACGCAGGTTCTTCTTGGACAAGCTGAAGGT < 41bp 1 0.0659688823920122 1 0.124078840017319 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102455097 chr14:102455116 nonsynonymous SNV 1.000 3 40 hm5C_associated_SNPs_46535 0 0 1 0 2 Cytosol 1 0.500231636346967 1 0.999536727306066 hm5C_site_45223 DeepMRMD:1;iRNA_m5C:0.999536727306066 45224 chr7 75933345 75933345 1 + C T UCS 75933337 + 75933317 75933357 41 GACCCCACCCAAGTTTCCTCCTCCCTGTCCCCTGAGGGCAC GACCCCACCCAAGTTTCCTCCTCCCTGTTCCCTGAGGGCAC < 41bp 1 0.478017773154427 1 0.439831525087357 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933337 chr7:75933345 nonsynonymous SNV 0.998 5 29 hm5C_associated_SNPs_46537 0 0 1 0 1 Cytosol 1 0.500231643920143 1 0.999536712159715 hm5C_site_45224 DeepMRMD:1;iRNA_m5C:0.999536712159715 45225 chr19 38633333 38633333 1 + C G UCS 38633337 + 38633317 38633357 41 CCACCTACGTGAGATACAAGCCATCCCCAGAAAGGTCAGCC CCACCTACGTGAGATAGAAGCCATCCCCAGAAAGGTCAGCC < 41bp 1 0.00950587969707359 1 0.189718335866928 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38633337 chr19:38633333 stopgain 1.000 0 17 hm5C_associated_SNPs_46538 0 0 0 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45225 DeepMRMD:1;iRNA_m5C:0.999536712157815 45226 chr12 53343316 53343316 1 + G A UCS 53343306 - 53343286 53343326 41 GACCTGGGGTCCCTTCTTCTCCAAGTGCTCCCGGATTTTGC GACCTGGGGTTCCTTCTTCTCCAAGTGCTCCCGGATTTTGC < 41bp 1 0.431734779264896 1 0.398361653089523 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53343306 chr12:53343316 nonsynonymous SNV 0.999 2 11 hm5C_associated_SNPs_46539 0 0 0 0 1 Cytosol 1 0.500231643920271 1 0.999536712159458 hm5C_site_45226 DeepMRMD:1;iRNA_m5C:0.999536712159458 45227 chr17 30293184 30293184 1 + G A UCS 30293195 + 30293175 30293215 41 TCATTTGCAGCTTACGTTTACTGGTTTCTTCCACAAAAATG TCATTTGCAACTTACGTTTACTGGTTTCTTCCACAAAAATG < 41bp 1 0.466149004265889 1 0.103860348463058 experiment 1 Functional Loss 31061524;GSE122261;BS-seq with improved protocol;Hela;Control|31061524;GSE122262;BS-seq with improved protocol;Hela;NSUN2 Knockout SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30293195 chr17:30293184 synonymous SNV . 0 10 hm5C_associated_SNPs_46540 0 0 1 0 2 Ribosome 1 0.50022664324611 1 0.999546713507781 hm5C_site_45227 DeepMRMD:1;iRNA_m5C:0.999546713507781 45228 chr17 47119660 47119660 1 + T C UVM 47119678 + 47119658 47119698 41 CATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA CACCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGA < 41bp 1 0.119698019351637 1 0.192812591791153 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119678 chr17:47119660 nonsynonymous SNV 0.992 1 3 hm5C_associated_SNPs_46541 0 0 1 0 1 Ribosome 1 0.50023164389543 1 0.999536712209139 hm5C_site_45228 DeepMRMD:1;iRNA_m5C:0.999536712209139 45229 chr17 47119660 47119660 1 + T C UVM 47119679 + 47119659 47119699 41 ATCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA ACCGAGAATTGTTGCAGGGCCGAGCAGGAAATAATGAAGAA < 41bp 1 0.362146479127785 1 0.258403986692429 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47119679 chr17:47119660 nonsynonymous SNV 0.992 1 2 hm5C_associated_SNPs_46542 0 0 1 0 1 Ribosome 1 0.500231643915136 1 0.999536712169727 hm5C_site_45229 DeepMRMD:1;iRNA_m5C:0.999536712169727 45230 chr10 118314738 118314738 1 + G A UVM 118314721 + 118314701 118314741 41 GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATT GCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCAATT < 41bp 1 0.251205801833685 1 0.0440946221351624 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314721 chr10:118314738 nonsynonymous SNV 0.995 5 38 hm5C_associated_SNPs_46544 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_45230 DeepMRMD:1;iRNA_m5C:0.999536712157815 45231 chr10 118314738 118314738 1 + G A UVM 118314723 + 118314703 118314743 41 AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGG AGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCAATTGG < 41bp 1 0.442283713033138 1 0.0472410023212433 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314723 chr10:118314738 nonsynonymous SNV 0.995 5 36 hm5C_associated_SNPs_46545 0 0 0 0 1 unknown 1 0.500231643921101 1 0.999536712157799 hm5C_site_45231 DeepMRMD:1;iRNA_m5C:0.999536712157799 Venlafaxine response in generalised anxiety disorder (remitters vs non-remitters after 12 weeks) 45232 chr10 118314738 118314738 1 + G A UVM 118314725 + 118314705 118314745 41 AACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGAC AACCTTGCTTTCAGGGCACACCTGAATTAGTCCAATTGGAC < 41bp 1 0.228012000210161 1 0.215187013149261 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314725 chr10:118314738 nonsynonymous SNV 0.995 5 34 hm5C_associated_SNPs_46546 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_45232 DeepMRMD:1;iRNA_m5C:0.999536712157815 45233 chr10 118314738 118314738 1 + G A UVM 118314726 + 118314706 118314746 41 ACCTTGCTTTCAGGGCACACCTGAATTAGTCCGATTGGACC ACCTTGCTTTCAGGGCACACCTGAATTAGTCCAATTGGACC < 41bp 1 0.696379229982563 1 0.556853175163269 experiment 0.607241540034874 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314726 chr10:118314738 nonsynonymous SNV 0.995 5 33 hm5C_associated_SNPs_46547 0 0 0 0 1 unknown 1 0.500231646671027 0.886293649673462 0.999536706657945 hm5C_site_45233 DeepMRMD:0.886293649673462;iRNA_m5C:0.999536706657945 45234 chr10 118314738 118314738 1 + G A UVM 118314736 + 118314716 118314756 41 CAGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGC CAGGGCACACCTGAATTAGTCCAATTGGACCCCAGCGATGC < 41bp 1 0.251345158614226 1 0.153278440237045 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314736 chr10:118314738 nonsynonymous SNV 0.995 5 23 hm5C_associated_SNPs_46548 0 0 0 0 1 unknown 1 0.500231642596397 1 0.999536714807205 hm5C_site_45234 DeepMRMD:1;iRNA_m5C:0.999536714807205 45235 chr10 118314738 118314738 1 + G A UVM 118314737 + 118314717 118314757 41 AGGGCACACCTGAATTAGTCCGATTGGACCCCAGCGATGCC AGGGCACACCTGAATTAGTCCAATTGGACCCCAGCGATGCC < 41bp 1 0.20123001405627 1 0.106453776359558 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314737 chr10:118314738 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_46549 0 0 0 0 1 unknown 1 0.500231643921093 1 0.999536712157815 hm5C_site_45235 DeepMRMD:1;iRNA_m5C:0.999536712157815 45236 chr10 118314738 118314738 1 + G A UVM 118314745 + 118314725 118314765 41 CCTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGT CCTGAATTAGTCCAATTGGACCCCAGCGATGCCAAATTTGT < 41bp 1 0.471488013787045 1 0.0601900815963745 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314745 chr10:118314738 nonsynonymous SNV 0.995 5 14 hm5C_associated_SNPs_46550 0 0 0 0 1 unknown 1 0.500231643921085 1 0.999536712157829 hm5C_site_45236 DeepMRMD:1;iRNA_m5C:0.999536712157829 45237 chr10 118314738 118314738 1 + G A UVM 118314746 + 118314726 118314766 41 CTGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTG CTGAATTAGTCCAATTGGACCCCAGCGATGCCAAATTTGTG < 41bp 1 0.11842582013548 1 0.0973059833049774 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314746 chr10:118314738 nonsynonymous SNV 0.995 5 13 hm5C_associated_SNPs_46551 0 0 0 0 1 unknown 1 0.50023161914754 1 0.99953676170492 hm5C_site_45237 DeepMRMD:1;iRNA_m5C:0.99953676170492 45238 chr10 118314738 118314738 1 + G A UVM 118314747 + 118314727 118314767 41 TGAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGG TGAATTAGTCCAATTGGACCCCAGCGATGCCAAATTTGTGG < 41bp 1 0.238743331676251 1 0.208536684513092 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314747 chr10:118314738 nonsynonymous SNV 0.995 5 12 hm5C_associated_SNPs_46552 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_45238 DeepMRMD:1;iRNA_m5C:0.999536712157815 45239 chr10 118314738 118314738 1 + G A UVM 118314748 + 118314728 118314768 41 GAATTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGA GAATTAGTCCAATTGGACCCCAGCGATGCCAAATTTGTGGA < 41bp 1 0.672955714840481 1 0.385645151138306 experiment 0.654088570319037 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314748 chr10:118314738 nonsynonymous SNV 0.995 5 11 hm5C_associated_SNPs_46553 0 0 0 0 1 unknown 1 0.50023164391688 1 0.99953671216624 hm5C_site_45239 DeepMRMD:1;iRNA_m5C:0.99953671216624 45240 chr10 118314738 118314738 1 + G A UVM 118314751 + 118314731 118314771 41 TTAGTCCGATTGGACCCCAGCGATGCCAAATTTGTGGATGT TTAGTCCAATTGGACCCCAGCGATGCCAAATTTGTGGATGT < 41bp 1 0.278656337133974 1 0.136267691850662 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314751 chr10:118314738 nonsynonymous SNV 0.995 5 8 hm5C_associated_SNPs_46554 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_45240 DeepMRMD:1;iRNA_m5C:0.999536712157815 45241 chr10 118314738 118314738 1 + G A UVM 118314756 + 118314736 118314776 41 CCGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC CCAATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTC < 41bp 1 0.33885482475381 1 0.0436730682849884 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314756 chr10:118314738 nonsynonymous SNV 0.995 5 3 hm5C_associated_SNPs_46555 0 0 0 0 1 unknown 1 0.500231643921092 1 0.999536712157815 hm5C_site_45241 DeepMRMD:1;iRNA_m5C:0.999536712157815 45242 chr10 118314738 118314738 1 + G A UVM 118314757 + 118314737 118314777 41 CGATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA CAATTGGACCCCAGCGATGCCAAATTTGTGGATGTAATTCA < 41bp 1 0.374483427154083 1 0.355504751205444 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314757 chr10:118314738 nonsynonymous SNV 0.995 5 2 hm5C_associated_SNPs_46556 0 0 0 0 1 unknown 1 0.500231643921179 1 0.999536712157641 hm5C_site_45242 DeepMRMD:1;iRNA_m5C:0.999536712157641 45243 chr17 73695881 73695881 1 + T C UVM 73695888 + 73695868 73695908 41 TTTTCTGAAAGAGTTCGGAACATGTCGCCTGATGAAATCAA TTTTCTGAAAGAGCTCGGAACATGTCGCCTGATGAAATCAA < 41bp 1 0.168838094001429 1 0.130280613899231 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695888 chr17:73695881 nonsynonymous SNV 0.996 1 14 hm5C_associated_SNPs_46557 0 0 1 0 2 Cytosol 1 0.500231643867742 1 0.999536712264516 hm5C_site_45243 DeepMRMD:1;iRNA_m5C:0.999536712264516 45244 chr17 73695881 73695881 1 + T C UVM 73695896 + 73695876 73695916 41 AAGAGTTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC AAGAGCTCGGAACATGTCGCCTGATGAAATCAAGATCCCGC < 41bp 1 0.328199989048477 1 0.178685754537582 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73695896 chr17:73695881 nonsynonymous SNV 0.996 1 6 hm5C_associated_SNPs_46559 0 0 1 0 2 Cytosol 1 0.500231608435882 1 0.999536783128236 hm5C_site_45244 DeepMRMD:1;iRNA_m5C:0.999536783128236 45245 chr17 71239111 71239111 1 + C G UVM 71239105 + 71239085 71239125 41 ACGATGCTCTTCACAGGATACTTCGTCCTGTGTTGTAGCTG ACGATGCTCTTCACAGGATACTTCGTGCTGTGTTGTAGCTG < 41bp 1 0.426194955412226 1 0.051678866147995 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239105 chr17:71239111 synonymous SNV . 0 27 hm5C_associated_SNPs_46560 0 0 1 0 2 chromatin 1 0.500231643909759 1 0.999536712180482 hm5C_site_45245 DeepMRMD:1;iRNA_m5C:0.999536712180482 45246 chr9 139734309 139734309 1 + G C UVM 139734292 + 139734272 139734312 41 GGGCTGGGGCTGGAGGAGGCCGGACCCAAGGAGAGCAGTGA GGGCTGGGGCTGGAGGAGGCCGGACCCAAGGAGAGCACTGA < 41bp 1 0.246782300019568 1 0.784770727157593 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734292 chr9:139734309 nonsynonymous SNV 0.093 2 38 hm5C_associated_SNPs_46561 0 0 1 0 1 chromatin 1 0.500231643971809 0.430458545684814 0.999536712056382 hm5C_site_45246 DeepMRMD:0.430458545684814;iRNA_m5C:0.999536712056382 45247 chr9 139734309 139734309 1 + G C UVM 139734296 + 139734276 139734316 41 TGGGGCTGGAGGAGGCCGGACCCAAGGAGAGCAGTGAGGAA TGGGGCTGGAGGAGGCCGGACCCAAGGAGAGCACTGAGGAA < 41bp 1 0.314673846434312 1 0.179113507270813 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734296 chr9:139734309 nonsynonymous SNV 0.093 2 34 hm5C_associated_SNPs_46562 0 0 1 0 1 chromatin 1 0.500231643921089 1 0.999536712157822 hm5C_site_45247 DeepMRMD:1;iRNA_m5C:0.999536712157822 45248 chr18 13096255 13096255 1 + G T UVM 13096273 + 13096253 13096293 41 CTGGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT CTTGCCAGCGCATTGCCTCACAGTCACGCCGCAGCATGGAT < 41bp 1 0.123463033411871 1 0.119163662195206 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096273 chr18:13096255 nonsynonymous SNV 1.000 4 3 hm5C_associated_SNPs_46565 0 0 1 0 1 Nucleus 1 0.500233094165476 1 0.999533811669048 hm5C_site_45248 DeepMRMD:1;iRNA_m5C:0.999533811669048 45249 chr2 182786871 182786871 1 + G A UVM 182786886 + 182786866 182786906 41 AGTGGGCAAATCCAAAACCCCATTAGTGGCAAGGAAGAAAG AGTGGACAAATCCAAAACCCCATTAGTGGCAAGGAAGAAAG < 41bp 1 0.316206458267397 1 0.0724817216396332 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182786886 chr2:182786871 nonsynonymous SNV 0.327 0 6 hm5C_associated_SNPs_46566 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45249 DeepMRMD:1;iRNA_m5C:0.999536712157815 45250 chr22 29674050 29674050 1 + C G UVM 29674054 + 29674034 29674074 41 CTGCCCCCCAGGCATACAGCCAGCCTGTCCAGGGGTATGGC CTGCCCCCCAGGCATAGAGCCAGCCTGTCCAGGGGTATGGC < 41bp 1 0.271368067773117 1 0.05897456407547 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29674054 chr22:29674050 stopgain 0.998 0 17 hm5C_associated_SNPs_46567 0 0 1 0 0 Cytosol 1 0.500231643921161 1 0.999536712157677 hm5C_site_45250 DeepMRMD:1;iRNA_m5C:0.999536712157677 45251 chr11 722155 722155 1 + C T UVM 722139 + 722119 722159 41 CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTCGGGCCTCTG CCAGCGCCGCGGAGCTCGTGCACTTCCTCTTCGGGCTTCTG < 41bp 1 0.0912939064877734 1 0.0163136124610901 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:722139 chr11:722155 nonsynonymous SNV 0.995 3 37 hm5C_associated_SNPs_46568 0 0 1 0 2 Cytosol 1 0.500231643911068 1 0.999536712177864 hm5C_site_45251 DeepMRMD:1;iRNA_m5C:0.999536712177864 45252 chr4 144336795 144336795 1 + G A UVM 144336803 + 144336783 144336823 41 AAAAAAGAGTTTGAAAACAGCTACATTTTTGATATCAACAC AAAAAAGAGTTTAAAAACAGCTACATTTTTGATATCAACAC < 41bp 1 0.525760986634933 1 0.20692640542984 experiment 0.948478026730134 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control GAB1 ENSG00000109458 CDS Human protein_coding chr4:144336803 chr4:144336795 nonsynonymous SNV 1.000 3 13 hm5C_associated_SNPs_46570 0 0 1 0 0 chromatin 1 0.500231660448543 1 0.999536679102914 hm5C_site_45252 DeepMRMD:1;iRNA_m5C:0.999536679102914 45253 chr13 101020822 101020822 1 + G A UVM 101020818 + 101020798 101020838 41 AGTAGCATCAAACAATGGGTCAGTGTTCTCGGTGAGTTTTC AGTAGCATCAAACAATGGGTCAGTATTCTCGGTGAGTTTTC < 41bp 1 0.282855563638912 1 0.246316522359848 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PCCA ENSG00000175198 CDS Human protein_coding chr13:101020818 chr13:101020822 synonymous SNV . 0 25 hm5C_associated_SNPs_46571 0 0 0 0 2 Endoplasmic reticulum 1 0.500231624445948 1 0.999536751108104 hm5C_site_45253 DeepMRMD:1;iRNA_m5C:0.999536751108104 45254 chr2 105472295 105472295 1 + C T UVM 105472285 + 105472265 105472305 41 AGCCCTGCCCCACGCCGCCGCCGCCGCCGCCGCTGCCGCCG AGCCCTGCCCCACGCCGCCGCCGCCGCCGCTGCTGCCGCCG < 41bp 1 0.25614348179141 1 0.61015522480011 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472285 chr2:105472295 synonymous SNV . 0 31 hm5C_associated_SNPs_46573 0 0 0 0 0 exosome 1 0.500231643921092 0.77968955039978 0.999536712157815 hm5C_site_45254 DeepMRMD:0.77968955039978;iRNA_m5C:0.999536712157815 Multiple complex diseases 45255 chr2 105472295 105472295 1 + C T UVM 105472288 + 105472268 105472308 41 CCTGCCCCACGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCG CCTGCCCCACGCCGCCGCCGCCGCCGCTGCTGCCGCCGCCG < 41bp 1 0.342247918348331 1 0.553135991096497 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472288 chr2:105472295 synonymous SNV . 0 28 hm5C_associated_SNPs_46575 0 0 0 0 0 exosome 1 0.500231623926223 0.893728017807006 0.999536752147553 hm5C_site_45255 DeepMRMD:0.893728017807006;iRNA_m5C:0.999536752147553 45256 chr2 105472295 105472295 1 + C T UVM 105472291 + 105472271 105472311 41 GCCCCACGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCCG GCCCCACGCCGCCGCCGCCGCCGCTGCTGCCGCCGCCGCCG < 41bp 1 0.575622155566126 1 0.366419315338135 experiment 0.848755688867748 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472291 chr2:105472295 synonymous SNV . 0 25 hm5C_associated_SNPs_46576 0 0 0 0 0 exosome 1 0.500231643921028 1 0.999536712157944 hm5C_site_45256 DeepMRMD:1;iRNA_m5C:0.999536712157944 45257 chr2 105472295 105472295 1 + C T UVM 105472292 + 105472272 105472312 41 CCCCACGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCCGC CCCCACGCCGCCGCCGCCGCCGCTGCTGCCGCCGCCGCCGC < 41bp 1 0.68820757293042 1 0.517986238002777 experiment 0.62358485413916 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472292 chr2:105472295 synonymous SNV . 0 24 hm5C_associated_SNPs_46577 0 0 0 0 0 exosome 1 0.500231643853867 0.964027523994446 0.999536712292267 hm5C_site_45257 DeepMRMD:0.964027523994446;iRNA_m5C:0.999536712292267 45258 chr2 105472295 105472295 1 + C T UVM 105472304 + 105472284 105472324 41 GCCGCCGCCGCCGCTGCCGCCGCCGCCGCCGTGGAGGCGAG GCCGCCGCCGCTGCTGCCGCCGCCGCCGCCGTGGAGGCGAG < 41bp 1 0.688971338022647 1 0.755200803279877 experiment 0.622057323954706 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472304 chr2:105472295 synonymous SNV . 0 12 hm5C_associated_SNPs_46579 0 0 0 0 0 exosome 1 0.500231643921092 0.489598393440246 0.999536712157815 hm5C_site_45258 DeepMRMD:0.489598393440246;iRNA_m5C:0.999536712157815 45259 chr2 105472295 105472295 1 + C T UVM 105472306 + 105472286 105472326 41 CGCCGCCGCCGCTGCCGCCGCCGCCGCCGTGGAGGCGAGCT CGCCGCCGCTGCTGCCGCCGCCGCCGCCGTGGAGGCGAGCT < 41bp 1 0.284869407336267 1 0.502819657325745 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472306 chr2:105472295 synonymous SNV . 0 10 hm5C_associated_SNPs_46580 0 0 0 0 0 exosome 1 0.500231643921095 0.99436068534851 0.99953671215781 hm5C_site_45259 DeepMRMD:0.99436068534851;iRNA_m5C:0.99953671215781 45260 chr2 105472295 105472295 1 + C T UVM 105472309 + 105472289 105472329 41 CGCCGCCGCTGCCGCCGCCGCCGCCGTGGAGGCGAGCTCGC CGCCGCTGCTGCCGCCGCCGCCGCCGTGGAGGCGAGCTCGC < 41bp 1 0.459127941626038 1 0.693157613277435 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472309 chr2:105472295 synonymous SNV . 0 7 hm5C_associated_SNPs_46582 0 0 0 0 0 exosome 1 0.500231644039197 0.61368477344513 0.999536711921606 hm5C_site_45260 DeepMRMD:0.61368477344513;iRNA_m5C:0.999536711921606 45261 chr2 105472298 105472298 1 + T C UVM 105472285 + 105472265 105472305 41 AGCCCTGCCCCACGCCGCCGCCGCCGCCGCCGCTGCCGCCG AGCCCTGCCCCACGCCGCCGCCGCCGCCGCCGCCGCCGCCG < 41bp 1 0.325614265820386 1 0.368473201990128 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472285 chr2:105472298 synonymous SNV . 0 34 hm5C_associated_SNPs_46585 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45261 DeepMRMD:1;iRNA_m5C:0.999536712157815 45262 chr2 105472298 105472298 1 + T C UVM 105472288 + 105472268 105472308 41 CCTGCCCCACGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCG CCTGCCCCACGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG < 41bp 1 0.416762314611858 1 0.383117198944092 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472288 chr2:105472298 synonymous SNV . 0 31 hm5C_associated_SNPs_46587 0 0 0 0 0 exosome 1 0.50023164465219 1 0.999536710695621 hm5C_site_45262 DeepMRMD:1;iRNA_m5C:0.999536710695621 45263 chr2 105472298 105472298 1 + T C UVM 105472291 + 105472271 105472311 41 GCCCCACGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCCG GCCCCACGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG < 41bp 1 0.52219479948163 1 0.29544073343277 experiment 0.95561040103674 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472291 chr2:105472298 synonymous SNV . 0 28 hm5C_associated_SNPs_46589 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45263 DeepMRMD:1;iRNA_m5C:0.999536712157815 45264 chr2 105472298 105472298 1 + T C UVM 105472294 + 105472274 105472314 41 CCACGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCCGCCG CCACGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG < 41bp 1 0.495552958916903 1 0.428925514221191 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472294 chr2:105472298 synonymous SNV . 0 25 hm5C_associated_SNPs_46591 0 0 0 0 0 exosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45264 DeepMRMD:1;iRNA_m5C:0.999536712157815 45265 chr2 105472298 105472298 1 + T C UVM 105472306 + 105472286 105472326 41 CGCCGCCGCCGCTGCCGCCGCCGCCGCCGTGGAGGCGAGCT CGCCGCCGCCGCCGCCGCCGCCGCCGCCGTGGAGGCGAGCT < 41bp 1 0.284283478087021 1 0.454093813896179 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472306 chr2:105472298 synonymous SNV . 0 13 hm5C_associated_SNPs_46594 0 0 0 0 0 exosome 1 0.500231643989582 1 0.999536712020836 hm5C_site_45265 DeepMRMD:1;iRNA_m5C:0.999536712020836 45266 chr2 105472298 105472298 1 + T C UVM 105472309 + 105472289 105472329 41 CGCCGCCGCTGCCGCCGCCGCCGCCGTGGAGGCGAGCTCGC CGCCGCCGCCGCCGCCGCCGCCGCCGTGGAGGCGAGCTCGC < 41bp 1 0.473222059794342 1 0.708127498626709 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472309 chr2:105472298 synonymous SNV . 0 10 hm5C_associated_SNPs_46596 0 0 0 0 0 exosome 1 0.500229949056807 0.583745002746582 0.999540101886387 hm5C_site_45266 DeepMRMD:0.583745002746582;iRNA_m5C:0.999540101886387 45267 chr6 31593371 31593371 1 + G A UVM 31593351 + 31593331 31593371 41 GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCG GCTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCA < 41bp 1 0.360454838219662 1 0.0941270291805267 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593351 chr6:31593371 nonsynonymous SNV 1.000 4 41 hm5C_associated_SNPs_46598 0 0 1 1 1 Ribosome 1 0.500231643925309 1 0.999536712149383 hm5C_site_45267 DeepMRMD:1;iRNA_m5C:0.999536712149383 45268 chr6 31593371 31593371 1 + G A UVM 31593352 + 31593332 31593372 41 CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGG CTACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCAG < 41bp 1 0.360329432608389 1 0.140684545040131 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593352 chr6:31593371 nonsynonymous SNV 1.000 4 40 hm5C_associated_SNPs_46599 0 0 1 1 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45268 DeepMRMD:1;iRNA_m5C:0.999536712157815 45269 chr6 31593371 31593371 1 + G A UVM 31593353 + 31593333 31593373 41 TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGA TACAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCAGA < 41bp 1 0.288224352695684 1 0.268606781959534 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control|31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control|28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593353 chr6:31593371 nonsynonymous SNV 1.000 4 39 hm5C_associated_SNPs_46600 0 0 1 1 1 Ribosome 1 0.500231643927427 1 0.999536712145146 hm5C_site_45269 DeepMRMD:1;iRNA_m5C:0.999536712145146 45270 chr6 31593371 31593371 1 + G A UVM 31593388 + 31593368 31593408 41 CGCGGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC CGCAGAATGATGCCGCCTTTCGTGAGTCTTGGTGTCTTGTC < 41bp 1 0.646796459124704 1 0.727220773696899 experiment 0.706407081750592 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31593388 chr6:31593371 nonsynonymous SNV 1.000 4 4 hm5C_associated_SNPs_46601 0 0 1 1 1 Ribosome 1 0.49961013882153 0.545558452606202 1 hm5C_site_45270 DeepMRMD:0.545558452606202;iRNA_m5C:1 45271 chr12 14650705 14650705 1 + G A UVM 14650689 + 14650669 14650709 41 TCTCTGCCTCAGAAGCCACACTTGAAGTTAGCACGCGTTCA TCTCTGCCTCAGAAGCCACACTTGAAGTTAGCACGCATTCA < 41bp 1 0.665345537031098 1 0.323249340057373 experiment 0.669308925937805 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14650689 chr12:14650705 nonsynonymous SNV 1.000 4 37 hm5C_associated_SNPs_46602 0 0 1 0 0 Cytosol 1 0.500231616405711 1 0.999536767188577 hm5C_site_45271 DeepMRMD:1;iRNA_m5C:0.999536767188577 45272 chr1 9416004 9416004 1 + G A UVM 9415999 + 9415979 9416019 41 AGACTGTGGACATGAGGGACCCCACGTACAGGCCCCTGAAG AGACTGTGGACATGAGGGACCCCACATACAGGCCCCTGAAG < 41bp 1 0.0929052397113203 1 0.170907616615295 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control SPSB1 ENSG00000171621 CDS Human protein_coding chr1:9415999 chr1:9416004 synonymous SNV . 0 26 hm5C_associated_SNPs_46603 0 0 1 0 0 nucleus 1 0.500231692309821 1 0.999536615380358 hm5C_site_45272 DeepMRMD:1;iRNA_m5C:0.999536615380358 45273 chr22 50861960 50861960 1 + C T UVM 50861963 + 50861943 50861983 41 CCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCAC CCCGTCTGCATGGCGCCTGCCTCATGGCAGCACTGCTGCAC < 41bp 1 0.572825996801906 1 0.165966391563416 experiment 0.854348006396187 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50861963 chr22:50861960 nonsynonymous SNV 0.999 4 18 hm5C_associated_SNPs_46604 0 0 1 0 2 Ribosome 1 0.500208956538269 1 0.999582086923462 hm5C_site_45273 DeepMRMD:1;iRNA_m5C:0.999582086923462 Multiple complex diseases 45274 chr11 61106798 61106798 1 + G A UVM 61106796 + 61106776 61106816 41 GGCCTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGT GGCCTGGCCCGGGAGCAGGCCCAGGCTGAAGGCATCCCGGT < 41bp 1 0.502772560837722 1 0.323551893234253 experiment 0.994454878324556 Functional Loss 30872485;GSE90963;RBS-Seq;HeLa;Control TKFC ENSG00000149476 CDS Human protein_coding chr11:61106796 chr11:61106798 nonsynonymous SNV 0.571 0 23 hm5C_associated_SNPs_46605 0 0 1 0 1 Cytosol 1 0.500231644090854 1 0.999536711818292 hm5C_site_45274 DeepMRMD:1;iRNA_m5C:0.999536711818292 45275 chr7 92987688 92987688 1 + T A LAML 92987685 + 92987665 92987705 41 GTTTGCCTGGGATCCCATATCAATAAGAAAGCAAGACAAAA GTTTGCCTGGGATCCCATATCAAAAAGAAAGCAAGACAAAA < 41bp 1 0.685062026746869 1 0.673618912696838 experiment 0.629875946506262 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control VPS50 ENSG00000004766 CDS Human protein_coding chr7:92987685 chr7:92987688 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_46607 0 0 0 1 1 Cytosol 1 0.500231643921092 0.652762174606324 0.999536712157816 hm5C_site_45275 DeepMRMD:0.652762174606324;iRNA_m5C:0.999536712157816 45276 chr1 6505934 6505934 1 + A G LAML 6505928 + 6505908 6505948 41 GCCTCCTGTAGGACCACAGGCAGCTGACATCTACATGCAGA GCCTCCTGTAGGACCACAGGCAGCTGGCATCTACATGCAGA < 41bp 1 0.322986975375819 1 0.463083148002625 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ESPN ENSG00000187017 CDS Human protein_coding chr1:6505928 chr1:6505934 nonsynonymous SNV 0.460 2 27 hm5C_associated_SNPs_46608 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45276 DeepMRMD:1;iRNA_m5C:0.999536712157815 45277 chr1 23236972 23236972 1 + G A LAML 23236971 + 23236951 23236991 41 TGGACTGTTGGCAGAAGGACCGCAACCACCGGCCCAAGTTC TGGACTGTTGGCAGAAGGACCACAACCACCGGCCCAAGTTC < 41bp 1 0.458435660251673 1 0.282206356525421 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236971 chr1:23236972 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_46609 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643920975 1 0.99953671215805 hm5C_site_45277 DeepMRMD:1;iRNA_m5C:0.99953671215805 45278 chr11 118267094 118267094 1 + T A LAML 118267077 + 118267057 118267097 41 CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACTAAA CCCCTCACCATGGACCAGATCCGGCCAAACACAGAACAAAA < 41bp 1 0.239748516706805 1 0.181405365467072 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control UBE4A ENSG00000110344 CDS Human protein_coding chr11:118267077 chr11:118267094 nonsynonymous SNV 0.999 4 38 hm5C_associated_SNPs_46610 0 0 1 0 1 Nucleus 1 0.500231643923106 1 0.999536712153789 hm5C_site_45278 DeepMRMD:1;iRNA_m5C:0.999536712153789 45279 chr12 124181004 124181004 1 + G T LAML 124181019 + 124180999 124181039 41 CAACAGGATGAATAATGTCACGACTTTACATCTTTGGCAAT CAACATGATGAATAATGTCACGACTTTACATCTTTGGCAAT < 41bp 1 0.26619775250029 1 0.12005603313446 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124181019 chr12:124181004 nonsynonymous SNV 0.002 1 6 hm5C_associated_SNPs_46611 0 0 1 0 2 Nucleus 1 0.500231960804527 1 0.999536078390946 hm5C_site_45279 DeepMRMD:1;iRNA_m5C:0.999536078390946 45280 chr22 22025318 22025318 1 + G A LAML 22025316 + 22025296 22025336 41 CAGCCCTTTGTCTACCCAGTCTGCACTCCCGATGGCATCGT CAGCCCTTTGTCTACCCAGTCTACACTCCCGATGGCATCGT < 41bp 1 0.408376865011113 1 0.239805579185486 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22025316 chr22:22025318 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_46612 0 0 1 0 2 Cytosol 1 0.500231644117511 1 0.999536711764978 hm5C_site_45280 DeepMRMD:1;iRNA_m5C:0.999536711764978 45281 chr15 69560925 69560925 1 + C T LAML 69560923 + 69560903 69560943 41 GACAACATTACCATCTCTACCACAGCCCACATGGCTGCATT GACAACATTACCATCTCTACCATAGCCCACATGGCTGCATT < 41bp 1 0.222763520936197 1 0.115506380796432 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control GLCE ENSG00000138604 CDS Human protein_coding chr15:69560923 chr15:69560925 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_46613 0 0 1 0 0 Ribosome 1 0.500231535402753 1 0.999536929194495 hm5C_site_45281 DeepMRMD:1;iRNA_m5C:0.999536929194495 45282 chr5 71492162 71492162 1 + G A LAML 71492181 + 71492161 71492201 41 GGCCAGTGGGGATGACCGAGCCGAAGAAGACATGGATGAGG GACCAGTGGGGATGACCGAGCCGAAGAAGACATGGATGAGG < 41bp 1 0.425772953091443 1 0.430784463882446 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71492181 chr5:71492162 nonsynonymous SNV 0.998 0 2 hm5C_associated_SNPs_46614 0 0 1 0 0 Cytosol 1 0.500231643938454 1 0.999536712123091 hm5C_site_45282 DeepMRMD:1;iRNA_m5C:0.999536712123091 45283 chr5 54641006 54641006 1 + C T LAML 54640986 + 54640966 54641006 41 TCGAGATGCAGGTGATTTGGCCAAAGGAGACCAGAAAGGGC TCGAGATGCAGGTGATTTGGCCAAAGGAGACCAGAAAGGGT < 41bp 1 0.474708368598779 1 0.681329965591431 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640986 chr5:54641006 nonsynonymous SNV 0.999 4 41 hm5C_associated_SNPs_46615 0 0 1 0 1 Nucleus 1 0.500231643921092 0.637340068817138 0.999536712157815 hm5C_site_45283 DeepMRMD:0.637340068817138;iRNA_m5C:0.999536712157815 45284 chr5 54641006 54641006 1 + C T LAML 54640997 + 54640977 54641017 41 GTGATTTGGCCAAAGGAGACCAGAAAGGGCGGAAAGGAGGA GTGATTTGGCCAAAGGAGACCAGAAAGGGTGGAAAGGAGGA < 41bp 1 0.634563070293425 1 0.423268288373947 experiment 0.730873859413151 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54640997 chr5:54641006 nonsynonymous SNV 0.999 4 30 hm5C_associated_SNPs_46616 0 0 1 0 1 Nucleus 1 0.500231643921093 1 0.999536712157815 hm5C_site_45284 DeepMRMD:1;iRNA_m5C:0.999536712157815 45285 chr20 36488360 36488360 1 + G A LAML 36488378 + 36488358 36488398 41 CGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG CGACGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTG < 41bp 1 0.373318731800433 1 0.057070791721344 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488378 chr20:36488360 synonymous SNV . 0 3 hm5C_associated_SNPs_46617 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_45285 DeepMRMD:1;iRNA_m5C:0.999536712157815 45286 chr17 48631738 48631738 1 + G A LAML 48631727 + 48631707 48631747 41 TGTGTGTGCCTATTGACCGCCTTTTCCGAGCGCATGCGTCG TGTGTGTGCCTATTGACCGCCTTTTCCGAGCACATGCGTCG < 41bp 1 0.0412409789439358 1 0.02955362200737 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631727 chr17:48631738 nonsynonymous SNV 0.997 4 32 hm5C_associated_SNPs_46618 0 0 1 0 1 nucleus 1 0.500231643921091 1 0.999536712157817 hm5C_site_45286 DeepMRMD:1;iRNA_m5C:0.999536712157817 45287 chr14 23239047 23239047 1 + C T LAML 23239030 + 23239010 23239050 41 TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC TGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCTAGC < 41bp 1 0.278367741641664 1 0.0430866479873657 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239030 chr14:23239047 stopgain 1.000 1 38 hm5C_associated_SNPs_46619 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157813 hm5C_site_45287 DeepMRMD:1;iRNA_m5C:0.999536712157813 45288 chr12 98926743 98926743 1 + C T LAML 98926754 + 98926734 98926774 41 GGGCAGTACCGAACTACAGGCAGCTAAGAAAGTACATACTT GGGCAGTACTGAACTACAGGCAGCTAAGAAAGTACATACTT < 41bp 1 0.453789514125035 1 0.244100034236908 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TMPO ENSG00000120802 CDS Human protein_coding chr12:98926754 chr12:98926743 synonymous SNV . 0 10 hm5C_associated_SNPs_46620 0 0 1 0 0 Ribosome 1 0.500231552116527 1 0.999536895766947 hm5C_site_45288 DeepMRMD:1;iRNA_m5C:0.999536895766947 45289 chr19 49130965 49130965 1 + G A LAML 49130953 + 49130933 49130973 41 TAACCTCTCTCCACAGAGATCACCCCTGACCTGCTACCTCG TAACCTCTCTCCACAGAGATCACCCCTGACCTACTACCTCG < 41bp 1 0.26597667380567 1 0.0370282828807831 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49130953 chr19:49130965 nonsynonymous SNV . 0 33 hm5C_associated_SNPs_46621 0 0 0 0 1 chromatin 1 0.500231643921165 1 0.99953671215767 hm5C_site_45289 DeepMRMD:1;iRNA_m5C:0.99953671215767 45290 chr8 95885675 95885675 1 + G C LAML 95885659 + 95885639 95885679 41 CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAAGGCTG CCAGGCAGGAGCTGTGTGTTCTGACTTCTTTAACAACGCTG < 41bp 1 0.619412299902896 1 0.164577424526215 experiment 0.761175400194208 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control INTS8 ENSG00000164941 CDS Human protein_coding chr8:95885659 chr8:95885675 nonsynonymous SNV 1.000 1 37 hm5C_associated_SNPs_46622 0 0 1 0 2 Nucleus 1 0.500258251244942 1 0.999483497510116 hm5C_site_45290 DeepMRMD:1;iRNA_m5C:0.999483497510116 45291 chr18 61648989 61648989 1 + C T LAML 61648969 + 61648949 61648989 41 TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATCAGGC TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATCAGGT < 41bp 1 0.158383960584371 1 0.130263656377792 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61648969 chr18:61648989 nonsynonymous SNV 0.633 4 41 hm5C_associated_SNPs_46623 0 0 0 0 1 nucleus 1 0.500231331758021 1 0.999537336483959 hm5C_site_45291 DeepMRMD:1;iRNA_m5C:0.999537336483959 45292 chr11 61507974 61507974 1 + G A LAML 61507955 + 61507935 61507975 41 CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGGG CTGCTGTGAGCAGGAGGAGCCCACATACTTTGCCATCTGAG < 41bp 1 0.112009620910156 1 0.289801836013794 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507955 chr11:61507974 stopgain 1.000 1 40 hm5C_associated_SNPs_46624 0 0 1 0 2 Endoplasmic reticulum 1 0.500232606913329 1 0.999534786173342 hm5C_site_45292 DeepMRMD:1;iRNA_m5C:0.999534786173342 45293 chr11 61507974 61507974 1 + G A LAML 61507980 + 61507960 61508000 41 TACTTTGCCATCTGGGGCGACAACAAGGCCTTCAATGAGGT TACTTTGCCATCTGAGGCGACAACAAGGCCTTCAATGAGGT < 41bp 1 0.176603694020955 1 0.198753267526627 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507980 chr11:61507974 stopgain 1.000 1 15 hm5C_associated_SNPs_46625 0 0 1 0 2 Endoplasmic reticulum 1 0.500231645044021 1 0.999536709911958 hm5C_site_45293 DeepMRMD:1;iRNA_m5C:0.999536709911958 45294 chr16 67914545 67914545 1 + G A LAML 67914550 + 67914530 67914570 41 CCCCTAGCCGCACTCGTTCCCCTGATGTCATCTCCTCAGCT CCCCTAGCCGCACTCATTCCCCTGATGTCATCTCCTCAGCT < 41bp 1 0.420524747591387 1 0.315146952867508 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914550 chr16:67914545 nonsynonymous SNV 0.854 4 16 hm5C_associated_SNPs_46626 0 0 1 0 1 Cytosol 1 0.500231643921727 1 0.999536712156546 hm5C_site_45294 DeepMRMD:1;iRNA_m5C:0.999536712156546 45295 chr12 57970117 57970117 1 + G T LAML 57970126 + 57970106 57970146 41 GCCCGGCTCCGGGACGAGATCAACGAGAAGCAGAAGACCAT GCCCGGCTCCGTGACGAGATCAACGAGAAGCAGAAGACCAT < 41bp 1 0.560324203403919 1 0.328804224729538 experiment 0.879351593192162 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970126 chr12:57970117 synonymous SNV . 0 12 hm5C_associated_SNPs_46627 0 0 1 0 1 Cytosol 1 0.500231643921203 1 0.999536712157593 hm5C_site_45295 DeepMRMD:1;iRNA_m5C:0.999536712157593 45296 chr6 47577008 47577008 1 + G A LAML 47577024 + 47577004 47577044 41 TGTTGTGCATTGTAGAAGCACTGAAAAAGGATCACGGGTAA TGTTATGCATTGTAGAAGCACTGAAAAAGGATCACGGGTAA < 41bp 1 0.643669335132884 1 0.387636005878448 experiment 0.712661329734233 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CD2AP ENSG00000198087 CDS Human protein_coding chr6:47577024 chr6:47577008 synonymous SNV . 0 5 hm5C_associated_SNPs_46628 0 0 1 0 1 Cytosol 1 0.500231800523396 1 0.999536398953209 hm5C_site_45296 DeepMRMD:1;iRNA_m5C:0.999536398953209 45297 chr20 44511398 44511398 1 + C T LAML 44511400 + 44511380 44511420 41 ACCAGGTTAACAAGACTGCCCAGTTAGATACCTTCAACTAC ACCAGGTTAACAAGACTGTCCAGTTAGATACCTTCAACTAC < 41bp 1 0.233177009092198 1 0.0977205634117126 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control ZSWIM1 ENSG00000168612 CDS Human protein_coding chr20:44511400 chr20:44511398 nonsynonymous SNV 0.984 0 19 hm5C_associated_SNPs_46629 0 0 1 0 0 nucleus 1 0.500231643920383 1 0.999536712159233 hm5C_site_45297 DeepMRMD:1;iRNA_m5C:0.999536712159233 45298 chr2 173429359 173429359 1 + T C LAML 173429352 + 173429332 173429372 41 CTGTCACCAGCCAGAATGTTCAGTACTTTTTGGATCGATTC CTGTCACCAGCCAGAATGTTCAGTACTCTTTGGATCGATTC < 41bp 1 0.497123596352056 1 0.0410113036632538 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PDK1 ENSG00000152256 CDS Human protein_coding chr2:173429352 chr2:173429359 nonsynonymous SNV 1.000 4 28 hm5C_associated_SNPs_46633 0 0 0 0 1 Ribosome 1 0.500231643920863 1 0.999536712158275 hm5C_site_45298 DeepMRMD:1;iRNA_m5C:0.999536712158275 45299 chr1 32620260 32620260 1 + G A LAML 32620246 + 32620226 32620266 41 GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGA GAAGAGCTATAAGAACAATGCTCTAAACCCTGAAAAAATGA < 41bp 1 0.322347743055168 1 0.21581044793129 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620246 chr1:32620260 nonsynonymous SNV 0.999 4 35 hm5C_associated_SNPs_46635 0 0 1 0 2 Cytosol 1 0.500231643815571 1 0.999536712368859 hm5C_site_45299 DeepMRMD:1;iRNA_m5C:0.999536712368859 45300 chr1 32620260 32620260 1 + G A LAML 32620248 + 32620228 32620268 41 AGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGA AGAGCTATAAGAACAATGCTCTAAACCCTGAAAAAATGAGA < 41bp 1 0.266574077449196 1 0.185256481170654 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620248 chr1:32620260 nonsynonymous SNV 0.999 4 33 hm5C_associated_SNPs_46636 0 0 1 0 2 Cytosol 1 0.500231638080337 1 0.999536723839326 hm5C_site_45300 DeepMRMD:1;iRNA_m5C:0.999536723839326 45301 chr1 32620260 32620260 1 + G A LAML 32620253 + 32620233 32620273 41 TATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAG TATAAGAACAATGCTCTAAACCCTGAAAAAATGAGACGAAG < 41bp 1 0.189615135957369 1 0.261202394962311 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620253 chr1:32620260 nonsynonymous SNV 0.999 4 28 hm5C_associated_SNPs_46637 0 0 1 0 2 Cytosol 1 0.500231679179904 1 0.999536641640191 hm5C_site_45301 DeepMRMD:1;iRNA_m5C:0.999536641640191 45302 chr1 32620260 32620260 1 + G A LAML 32620254 + 32620234 32620274 41 ATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGA ATAAGAACAATGCTCTAAACCCTGAAAAAATGAGACGAAGA < 41bp 1 0.275793984772246 1 0.467492878437042 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32620254 chr1:32620260 nonsynonymous SNV 0.999 4 27 hm5C_associated_SNPs_46638 0 0 1 0 2 Cytosol 1 0.50023166997299 1 0.99953666005402 hm5C_site_45302 DeepMRMD:1;iRNA_m5C:0.99953666005402 45303 chr5 82868289 82868289 1 + G A LAML 82868273 + 82868253 82868293 41 CCCAACCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTG CCCAACCAGCCAGACAGCTTCTTTTCTGCTGGAGAAAACTG < 41bp 1 0.0258622156997221 1 0.0271070003509521 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868273 chr5:82868289 nonsynonymous SNV 0.996 3 37 hm5C_associated_SNPs_46640 0 0 1 0 2 Ribosome 1 0.500247064313063 1 0.999505871373873 hm5C_site_45303 DeepMRMD:1;iRNA_m5C:0.999505871373873 45304 chr5 82868289 82868289 1 + G A LAML 82868278 + 82868258 82868298 41 CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAGACTGTGTTG CCAGCCAGACAGCTTCTTTTCTGCTGGAGAAAACTGTGTTG < 41bp 1 0.52264342020905 1 0.462535679340363 experiment 0.9547131595819 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control VCAN ENSG00000038427 CDS Human protein_coding chr5:82868278 chr5:82868289 nonsynonymous SNV 0.996 3 32 hm5C_associated_SNPs_46641 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_45304 DeepMRMD:1;iRNA_m5C:0.999536712157815 45305 chr9 131559367 131559367 1 + G A LAML 131559385 + 131559365 131559405 41 AGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCA AGAGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCA < 41bp 1 0.0499212403283682 1 0.054042637348175 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TBC1D13 ENSG00000107021 CDS Human protein_coding chr9:131559385 chr9:131559367 synonymous SNV . 0 3 hm5C_associated_SNPs_46643 0 0 1 0 1 Cytosol 1 0.500231643921133 1 0.999536712157734 hm5C_site_45305 DeepMRMD:1;iRNA_m5C:0.999536712157734 45306 chr1 117617662 117617662 1 + T A LAML 117617658 + 117617638 117617678 41 TGAAGGTGAGGAAAAGAAGGCTGATAAGAAGCAAAGAGAAA TGAAGGTGAGGAAAAGAAGGCTGAAAAGAAGCAAAGAGAAA < 41bp 1 0.50243788236204 1 0.281635165214539 experiment 0.99512423527592 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTF2 ENSG00000116830 CDS Human protein_coding chr1:117617658 chr1:117617662 nonsynonymous SNV 0.071 1 25 hm5C_associated_SNPs_46644 0 0 1 0 0 Nucleus 1 0.500231643920887 1 0.999536712158226 hm5C_site_45306 DeepMRMD:1;iRNA_m5C:0.999536712158226 45307 chr1 117617662 117617662 1 + T A LAML 117617669 + 117617649 117617689 41 AAAAGAAGGCTGATAAGAAGCAAAGAGAAAAGGGAGATCAG AAAAGAAGGCTGAAAAGAAGCAAAGAGAAAAGGGAGATCAG < 41bp 1 0.555846489991295 1 0.707179605960846 experiment 0.88830702001741 Functional Loss 30526041;GSE122414;RNA-BisSeq;HEK293;NSUN2 Knockout TTF2 ENSG00000116830 CDS Human protein_coding chr1:117617669 chr1:117617662 nonsynonymous SNV 0.071 1 14 hm5C_associated_SNPs_46645 0 0 1 0 0 Nucleus 1 0.500231643933239 0.585640788078308 0.999536712133522 hm5C_site_45307 DeepMRMD:0.585640788078308;iRNA_m5C:0.999536712133522 45308 chrX 49853397 49853397 1 + A T LAML 49853386 + 49853366 49853406 41 CCTCTTTATCCCTAGCATGGCTGTTGGTGCTATAGCAGGTC CCTCTTTATCCCTAGCATGGCTGTTGGTGCTTTAGCAGGTC < 41bp 1 0.184766040490953 1 0.0932470560073853 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49853386 chrX:49853397 nonsynonymous SNV 1.000 3 32 hm5C_associated_SNPs_46646 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45308 DeepMRMD:1;iRNA_m5C:0.999536712157815 45309 chr3 47385201 47385201 1 + T C LAML 47385197 + 47385177 47385217 41 CTCAGCATTGCCGAGATGTACAGCTCTGTGGCAGACCAGTG CTCAGCATTGCCGAGATGTACAGCCCTGTGGCAGACCAGTG < 41bp 1 0.386152742218445 1 0.129119485616684 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47385197 chr3:47385201 nonsynonymous SNV 0.981 1 25 hm5C_associated_SNPs_46647 0 0 1 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_45309 DeepMRMD:1;iRNA_m5C:0.999536712157815 45310 chr3 132394124 132394124 1 + A T LAML 132394139 + 132394119 132394159 41 TTTTTACCTTGGATACAATGCAATGCAGGATTTTTTTCCTA TTTTTTCCTTGGATACAATGCAATGCAGGATTTTTTTCCTA < 41bp 1 0.313946380688994 1 0.157161056995392 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control UBA5 ENSG00000081307 CDS Human protein_coding chr3:132394139 chr3:132394124 nonsynonymous SNV 1.000 1 6 hm5C_associated_SNPs_46648 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_45310 DeepMRMD:1;iRNA_m5C:0.999536712157815 45311 chr10 73562786 73562786 1 + A G LAML 73562773 + 73562753 73562793 41 GGTCATCACCATGATGGCCACTGACCAGGATGAAGGTCCCA GGTCATCACCATGATGGCCACTGACCAGGATGAGGGTCCCA < 41bp 1 0.102847466844448 1 0.0735977590084076 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control CDH23 ENSG00000107736 CDS Human protein_coding chr10:73562773 chr10:73562786 synonymous SNV . 0 34 hm5C_associated_SNPs_46649 0 0 0 0 1 exosome 1 0.500231257574011 1 0.999537484851978 hm5C_site_45311 DeepMRMD:1;iRNA_m5C:0.999537484851978 45312 chr5 102343181 102343181 1 + C A LAML 102343174 + 102343154 102343194 41 TCTGCAGAGTCTTCAGGGAGCAGTCCTCTGCCAGGCCAGTT TCTGCAGAGTCTTCAGGGAGCAGTCCTATGCCAGGCCAGTT < 41bp 1 0.151650230687766 1 0.255195260047913 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PAM ENSG00000145730 CDS Human protein_coding chr5:102343174 chr5:102343181 nonsynonymous SNV 0.683 0 28 hm5C_associated_SNPs_46650 0 0 1 0 0 Ribosome 1 0.500263699205397 1 0.999472601589207 hm5C_site_45312 DeepMRMD:1;iRNA_m5C:0.999472601589207 45313 chr19 13930251 13930251 1 + G A LAML 13930238 + 13930218 13930258 41 CCCATGCACACCTGTGCCCGCTACCTGTTCACCGCACTGCT CCCATGCACACCTGTGCCCGCTACCTGTTCACCACACTGCT < 41bp 1 0.108201115561226 1 0.0762214660644531 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930238 chr19:13930251 nonsynonymous SNV 0.889 0 34 hm5C_associated_SNPs_46651 0 0 1 0 2 chromatin 1 0.500231644038759 1 0.999536711922482 hm5C_site_45313 DeepMRMD:1;iRNA_m5C:0.999536711922482 45314 chr1 46977836 46977836 1 + C T LAML 46977851 + 46977831 46977871 41 CAGCACATGGCGGCCACCAACAACCTGGTGCACTACTCGTC CAGCATATGGCGGCCACCAACAACCTGGTGCACTACTCGTC < 41bp 1 0.505993818450739 1 0.452771335840225 experiment 0.988012363098522 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46977851 chr1:46977836 synonymous SNV . 0 6 hm5C_associated_SNPs_46652 0 0 0 0 0 nucleolus 1 0.500231617182017 1 0.999536765635966 hm5C_site_45314 DeepMRMD:1;iRNA_m5C:0.999536765635966 45315 chr22 38168624 38168624 1 + C T LAML 38168604 + 38168584 38168624 41 TCATACCTGCCTCCTGCCCCCCAGGACAAGCGCTTCACCTC TCATACCTGCCTCCTGCCCCCCAGGACAAGCGCTTCACCTT < 41bp 1 0.144386701894157 1 0.263983815908432 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIOBP ENSG00000100106 CDS Human protein_coding chr22:38168604 chr22:38168624 nonsynonymous SNV 0.975 3 41 hm5C_associated_SNPs_46654 0 0 1 0 1 Ribosome 1 0.500231639013962 1 0.999536721972075 hm5C_site_45315 DeepMRMD:1;iRNA_m5C:0.999536721972075 45316 chr22 38168624 38168624 1 + C T LAML 38168605 + 38168585 38168625 41 CATACCTGCCTCCTGCCCCCCAGGACAAGCGCTTCACCTCG CATACCTGCCTCCTGCCCCCCAGGACAAGCGCTTCACCTTG < 41bp 1 0.483333145955962 1 0.851590991020203 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control TRIOBP ENSG00000100106 CDS Human protein_coding chr22:38168605 chr22:38168624 nonsynonymous SNV 0.975 3 40 hm5C_associated_SNPs_46655 0 0 1 0 1 Ribosome 1 0.500231640956061 0.296818017959594 0.999536718087878 hm5C_site_45316 DeepMRMD:0.296818017959594;iRNA_m5C:0.999536718087878 45317 chr8 22054839 22054839 1 + C T LAML 22054853 + 22054833 22054873 41 GAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCG GAAGCCTGAGGTCATCACCTCCCAGTACAACAACATGCGCG < 41bp 1 0.132823223766024 1 0.149817824363708 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control BMP1 ENSG00000168487 CDS Human protein_coding chr8:22054853 chr8:22054839 synonymous SNV . 0 7 hm5C_associated_SNPs_46656 0 0 1 0 2 Endoplasmic reticulum 1 0.5002316439212 1 0.9995367121576 hm5C_site_45317 DeepMRMD:1;iRNA_m5C:0.9995367121576 45318 chrX 133547576 133547576 1 + T A LAML 133547561 + 133547541 133547581 41 AATGAACATGAACTGGAGCCCTCATCACCTAAAAGTAAAAA AATGAACATGAACTGGAGCCCTCATCACCTAAAAGAAAAAA < 41bp 1 0.162818956113026 1 0.150600880384445 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control PHF6 ENSG00000156531 CDS Human protein_coding chrX:133547561 chrX:133547576 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_46657 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45318 DeepMRMD:1;iRNA_m5C:0.999536712157815 45319 chr20 2097424 2097424 1 + C A LAML 2097414 + 2097394 2097434 41 GTATGTCCTGTCCCGGAGGCCAGACCCAGCCACCAACAAAA GTATGTCCTGTCCCGGAGGCCAGACCCAGCAACCAACAAAA < 41bp 1 0.11220733141859 1 0.378409445285797 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient STK35 ENSG00000125834 CDS Human protein_coding chr20:2097414 chr20:2097424 synonymous SNV . 0 31 hm5C_associated_SNPs_46658 0 0 1 0 0 Ribosome 1 0.500231643924321 1 0.999536712151359 hm5C_site_45319 DeepMRMD:1;iRNA_m5C:0.999536712151359 45320 chr22 32445976 32445976 1 + C T LAML 32445971 + 32445951 32445991 41 GGGACTGTTGGAGGCTTCTTCCTGGCAGGCCGAAGTATGGT GGGACTGTTGGAGGCTTCTTCCTGGTAGGCCGAAGTATGGT < 41bp 1 0.338620697327483 1 0.443236440420151 experiment 1 Functional Loss 28418038;GSE93752;RNA-BisSeq;HeLa;Control SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32445971 chr22:32445976 nonsynonymous SNV 0.999 5 26 hm5C_associated_SNPs_46659 0 0 0 0 2 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45320 DeepMRMD:1;iRNA_m5C:0.999536712157815 45321 chr17 38152546 38152546 1 + C T LAML 38152535 + 38152515 38152555 41 ATTCCACCCGAGAGCCCCAGCTAGCCTTCCACCAGCGCATC ATTCCACCCGAGAGCCCCAGCTAGCCTTCCATCAGCGCATC < 41bp 1 0.381245905751617 1 0.111271113157272 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38152535 chr17:38152546 synonymous SNV . 0 32 hm5C_associated_SNPs_46660 0 0 1 1 1 Ribosome 1 0.500231643921091 1 0.999536712157818 hm5C_site_45321 DeepMRMD:1;iRNA_m5C:0.999536712157818 45322 chr17 57287579 57287579 1 + C T LAML 57287568 + 57287548 57287588 41 GAGATCTGCGTTGTGGGAATCTTCGGCAAGACGGCTCTACG GAGATCTGCGTTGTGGGAATCTTCGGCAAGATGGCTCTACG < 41bp 1 0.526911628198695 1 0.607359886169434 experiment 0.946176743602609 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control SMG8 ENSG00000167447 CDS Human protein_coding chr17:57287568 chr17:57287579 nonsynonymous SNV 0.996 4 32 hm5C_associated_SNPs_46662 0 0 0 0 0 chromatin 1 0.500232020739095 0.785280227661132 0.99953595852181 hm5C_site_45322 DeepMRMD:0.785280227661132;iRNA_m5C:0.99953595852181 45323 chr18 61648970 61648970 1 + T A LAML 61648969 + 61648949 61648989 41 TTGCAGGACTTTAAAGAATACTGTCAGAAGTTCTATCAGGC TTGCAGGACTTTAAAGAATACAGTCAGAAGTTCTATCAGGC < 41bp 1 0.189986858075284 1 0.196743369102478 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61648969 chr18:61648970 nonsynonymous SNV 0.330 4 22 hm5C_associated_SNPs_46663 0 0 0 0 1 nucleus 1 0.500231643809732 1 0.999536712380536 hm5C_site_45323 DeepMRMD:1;iRNA_m5C:0.999536712380536 45324 chr12 56335326 56335326 1 + C T LAML 56335343 + 56335323 56335363 41 ACCCTCGACAGGTGTTCAACCTCCTAAAGGATGGTCCTGAG ACCTTCGACAGGTGTTCAACCTCCTAAAGGATGGTCCTGAG < 41bp 1 0.678689274539386 1 0.459710836410522 experiment 0.642621450921227 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient DGKA ENSG00000065357 CDS Human protein_coding chr12:56335343 chr12:56335326 nonsynonymous SNV 0.988 4 4 hm5C_associated_SNPs_46664 0 0 0 0 0 Cytosol 1 0.50023164942077 1 0.99953670115846 hm5C_site_45324 DeepMRMD:1;iRNA_m5C:0.99953670115846 45325 chr17 15907567 15907567 1 + C T LAML 15907552 + 15907532 15907572 41 TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGCGCAGA TGAAATTTCCCTAAAGCTGGCCAGTATCTATGCTGTGCAGA < 41bp 1 0.108902748247854 1 0.0754283368587494 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TTC19 ENSG00000011295 CDS Human protein_coding chr17:15907552 chr17:15907567 nonsynonymous SNV 0.995 1 36 hm5C_associated_SNPs_46665 0 0 1 2 2 Ribosome 1 0.500231643920911 1 0.999536712158178 hm5C_site_45325 DeepMRMD:1;iRNA_m5C:0.999536712158178 45326 chr11 94554954 94554954 1 + G A LAML 94554949 + 94554929 94554969 41 ACCGGGTGCTTCACCAGGAACTTCAGGGTTACTACGACAAT ACCGGGTGCTTCACCAGGAACTTCAAGGTTACTACGACAAT < 41bp 1 0.264182780124761 1 0.0764732360839844 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94554949 chr11:94554954 nonsynonymous SNV . 0 26 hm5C_associated_SNPs_46666 0 0 0 0 1 chromatin 1 0.500231627754348 1 0.999536744491304 hm5C_site_45326 DeepMRMD:1;iRNA_m5C:0.999536744491304 45327 chr19 41510014 41510014 1 + G A LAML 41510016 + 41509996 41510036 41 CTTGTGGACAAGGCTGAGGCCTTCTCTGGCCGGGGAAAAAT CTTGTGGACAAGGCTGAGACCTTCTCTGGCCGGGGAAAAAT < 41bp 1 0.262134485139253 1 0.0710695087909698 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510016 chr19:41510014 nonsynonymous SNV 0.168 2 19 hm5C_associated_SNPs_46667 0 0 0 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45327 DeepMRMD:1;iRNA_m5C:0.999536712157815 45328 chr11 8934046 8934046 1 + C A LAML 8934032 + 8934012 8934052 41 CCCCCAACCCTTAGTGCTTCCTTCAGAACAATGGCTGAATT CCCCCAACCCTTAGTGCTTCCTTCAGAACAATGGATGAATT < 41bp 1 0.4757308229136 1 0.30458265542984 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control AKIP1 ENSG00000166452 CDS Human protein_coding chr11:8934032 chr11:8934046 nonsynonymous SNV 0.994 3 35 hm5C_associated_SNPs_46668 0 0 1 0 2 Ribosome 1 0.500231643821964 1 0.999536712356073 hm5C_site_45328 DeepMRMD:1;iRNA_m5C:0.999536712356073 45329 chr7 99627499 99627499 1 + A G LAML 99627493 + 99627473 99627513 41 TCCTCCCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCC TCCTCCCCCAGCTCTTCCTGCTGCCCGCATTCCTGCACCCC < 41bp 1 0.289729830306364 1 0.0856516659259796 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627493 chr7:99627499 nonsynonymous SNV 0.257 0 27 hm5C_associated_SNPs_46669 0 0 1 0 2 Cytosol 1 0.500231643921135 1 0.99953671215773 hm5C_site_45329 DeepMRMD:1;iRNA_m5C:0.99953671215773 45330 chr7 99627499 99627499 1 + A G LAML 99627498 + 99627478 99627518 41 CCCCAGCTCTTCCTGCTGCCCACATTCCTGCACCCCCTCAT CCCCAGCTCTTCCTGCTGCCCGCATTCCTGCACCCCCTCAT < 41bp 1 0.586206336849641 1 0.201083093881607 experiment 0.827587326300719 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99627498 chr7:99627499 nonsynonymous SNV 0.257 0 22 hm5C_associated_SNPs_46670 0 0 1 0 2 Cytosol 1 0.500231527130368 1 0.999536945739264 hm5C_site_45330 DeepMRMD:1;iRNA_m5C:0.999536945739264 45331 chr15 41865248 41865248 1 + G A LAML 41865260 + 41865240 41865280 41 TTGCCTGCGGCATGGAGTACCTGAGCTCTCGGAACTTCATC TTGCCTGCAGCATGGAGTACCTGAGCTCTCGGAACTTCATC < 41bp 1 0.42234032641187 1 0.099297046661377 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865260 chr15:41865248 nonsynonymous SNV 1.000 3 9 hm5C_associated_SNPs_46671 0 0 1 0 2 Ribosome 1 0.500227359525596 1 0.999545280948807 hm5C_site_45331 DeepMRMD:1;iRNA_m5C:0.999545280948807 45332 chr19 6362553 6362553 1 + G A LAML 6362549 + 6362529 6362569 41 ATCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTC ATCCACATGTACATCAACAGCCCTAGTGAGCAGGGTCTTTC < 41bp 1 0.344358302744854 1 0.0274717509746552 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6362549 chr19:6362553 nonsynonymous SNV 0.903 4 25 hm5C_associated_SNPs_46672 0 0 1 0 2 Cytosol 1 0.50023164392094 1 0.999536712158119 hm5C_site_45332 DeepMRMD:1;iRNA_m5C:0.999536712158119 45333 chr19 6362553 6362553 1 + G A LAML 6362550 + 6362530 6362570 41 TCCACATGTACATCAACAGCCCTGGTGAGCAGGGTCTTTCC TCCACATGTACATCAACAGCCCTAGTGAGCAGGGTCTTTCC < 41bp 1 0.09427717839836 1 0.0615889728069305 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control CLPP ENSG00000125656 CDS Human protein_coding chr19:6362550 chr19:6362553 nonsynonymous SNV 0.903 4 24 hm5C_associated_SNPs_46673 0 0 1 0 2 Cytosol 1 0.500231645862948 1 0.999536708274105 hm5C_site_45333 DeepMRMD:1;iRNA_m5C:0.999536708274105 45334 chr9 139228926 139228926 1 + C A LAML 139228915 + 139228895 139228935 41 TCTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGG TCTGCACAGGATGGAGGCGTCCTGCCTAGAGATGGCGCTGG < 41bp 1 0.155009415237284 1 0.154563069343567 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228915 chr9:139228926 nonsynonymous SNV 0.955 3 32 hm5C_associated_SNPs_46674 0 0 1 0 1 Cytosol 1 0.500231644772403 1 0.999536710455194 hm5C_site_45334 DeepMRMD:1;iRNA_m5C:0.999536710455194 45335 chr9 139228926 139228926 1 + C A LAML 139228916 + 139228896 139228936 41 CTGCACAGGATGGAGGCGTCCTGCCTAGAGCTGGCGCTGGA CTGCACAGGATGGAGGCGTCCTGCCTAGAGATGGCGCTGGA < 41bp 1 0.471627029295275 1 0.224612504243851 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228916 chr9:139228926 nonsynonymous SNV 0.955 3 31 hm5C_associated_SNPs_46675 0 0 1 0 1 Cytosol 1 0.500232334530514 1 0.999535330938973 hm5C_site_45335 DeepMRMD:1;iRNA_m5C:0.999535330938973 45336 chr5 71491693 71491693 1 + C T LAML 71491699 + 71491679 71491719 41 CCTGAGGATCTAACCAAGGACTTTGAAGAGTTAAAGGCTGA CCTGAGGATCTAACTAAGGACTTTGAAGAGTTAAAGGCTGA < 41bp 1 0.0548177184466941 1 0.0991254448890686 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control MAP1B ENSG00000131711 CDS Human protein_coding chr5:71491699 chr5:71491693 synonymous SNV . 0 15 hm5C_associated_SNPs_46676 0 0 1 0 0 Cytosol 1 0.500231643920954 1 0.999536712158093 hm5C_site_45336 DeepMRMD:1;iRNA_m5C:0.999536712158093 45337 chr20 37144940 37144940 1 + C A LAML 37144939 + 37144919 37144959 41 GCAAGAATTGAATCAGTATCCCTGCCTTAAACATCTGCCTC GCAAGAATTGAATCAGTATCCATGCCTTAAACATCTGCCTC < 41bp 1 0.302640521775024 1 0.386873066425323 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37144939 chr20:37144940 synonymous SNV . 0 22 hm5C_associated_SNPs_46677 0 0 1 0 1 Nucleus 1 0.500231643921474 1 0.999536712157053 hm5C_site_45337 DeepMRMD:1;iRNA_m5C:0.999536712157053 45338 chr19 54377043 54377043 1 + T A LAML 54377053 + 54377033 54377073 41 ATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTC ATCGTGGAGCAGTGCGGGCTCCAGGCCCGCTTCCCCCTGTC < 41bp 1 0.679583244802233 1 0.908292233943939 experiment 0.640833510395534 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control MYADM ENSG00000179820 CDS Human protein_coding chr19:54377053 chr19:54377043 nonsynonymous SNV 0.037 1 11 hm5C_associated_SNPs_46678 0 0 1 0 0 Nucleus 1 0.50023164392109 0.183415532112122 0.999536712157821 hm5C_site_45338 DeepMRMD:0.183415532112122;iRNA_m5C:0.999536712157821 45339 chr12 53428441 53428441 1 + G A LAML 53428436 + 53428416 53428456 41 AAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAG AAGAAACTCAGGAACGGGAACGGTCAAGGACAGGAAGTGAG < 41bp 1 0.188830324399445 1 0.532856225967407 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53428436 chr12:53428441 synonymous SNV . 0 26 hm5C_associated_SNPs_46679 0 0 1 0 2 Cytosol 1 0.500231643921092 0.934287548065186 0.999536712157815 hm5C_site_45339 DeepMRMD:0.934287548065186;iRNA_m5C:0.999536712157815 45340 chr16 16103700 16103700 1 + G A LAML 16103711 + 16103691 16103731 41 AAAGAAGTCGGGGCATATTCCTGGCCCCAGTGTTTCTGGTC AAAGAAGTCAGGGCATATTCCTGGCCCCAGTGTTTCTGGTC < 41bp 1 0.472516449856821 1 0.300415635108948 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16103711 chr16:16103700 nonsynonymous SNV 0.535 0 10 hm5C_associated_SNPs_46680 0 0 1 0 1 Mitochondrion 1 0.50023164417416 1 0.999536711651681 hm5C_site_45340 DeepMRMD:1;iRNA_m5C:0.999536711651681 45341 chr17 38320064 38320064 1 + C T LAML 38320054 + 38320034 38320074 41 ATCTCCAGAAGCAGATGCTCCAGTGCTTGGCAGTCCTGAGA ATCTCCAGAAGCAGATGCTCCAGTGCTTGGTAGTCCTGAGA < 41bp 1 0.395346413733866 1 0.421825557947159 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320054 chr17:38320064 synonymous SNV . 0 31 hm5C_associated_SNPs_46681 0 0 1 0 0 Ribosome 1 0.5002316439198 1 0.999536712160399 hm5C_site_45341 DeepMRMD:1;iRNA_m5C:0.999536712160399 45342 chr17 38320064 38320064 1 + C T LAML 38320059 + 38320039 38320079 41 CAGAAGCAGATGCTCCAGTGCTTGGCAGTCCTGAGAAGGAA CAGAAGCAGATGCTCCAGTGCTTGGTAGTCCTGAGAAGGAA < 41bp 1 0.470702258602934 1 0.149174302816391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320059 chr17:38320064 synonymous SNV . 0 26 hm5C_associated_SNPs_46682 0 0 1 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45342 DeepMRMD:1;iRNA_m5C:0.999536712157815 45343 chr17 38320064 38320064 1 + C T LAML 38320069 + 38320049 38320089 41 TGCTCCAGTGCTTGGCAGTCCTGAGAAGGAAGAGGCAGCCT TGCTCCAGTGCTTGGTAGTCCTGAGAAGGAAGAGGCAGCCT < 41bp 1 0.646554635280669 1 0.145810693502426 experiment 0.706890729438662 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320069 chr17:38320064 synonymous SNV . 0 16 hm5C_associated_SNPs_46683 0 0 1 0 0 Ribosome 1 0.500231643876934 1 0.999536712246131 hm5C_site_45343 DeepMRMD:1;iRNA_m5C:0.999536712246131 45344 chr19 19308376 19308376 1 + C T LAML 19308370 + 19308350 19308390 41 CCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGC CCAGACGAGCGCGGCTTCACCCCCCTTATCTGGGCCTCCGC < 41bp 1 0.435021544361656 1 0.0621769428253174 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308370 chr19:19308376 synonymous SNV . 0 27 hm5C_associated_SNPs_46685 0 0 1 0 2 Ribosome 1 0.500231643921093 1 0.999536712157813 hm5C_site_45344 DeepMRMD:1;iRNA_m5C:0.999536712157813 45345 chr19 19308376 19308376 1 + C T LAML 19308371 + 19308351 19308391 41 CAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCC CAGACGAGCGCGGCTTCACCCCCCTTATCTGGGCCTCCGCC < 41bp 1 0.364263472691098 1 0.0675775408744812 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control RFXANK ENSG00000064490 CDS Human protein_coding chr19:19308371 chr19:19308376 synonymous SNV . 0 26 hm5C_associated_SNPs_46686 0 0 1 0 2 Ribosome 1 0.500231435131389 1 0.999537129737222 hm5C_site_45345 DeepMRMD:1;iRNA_m5C:0.999537129737222 45346 chr7 104717836 104717836 1 + T C LAML 104717824 + 104717804 104717844 41 GATGCACTTATCATTGAATACAGAGGGAAGTTTATGCTGAG GATGCACTTATCATTGAATACAGAGGGAAGTTCATGCTGAG < 41bp 1 0.537452485494253 1 0.738030791282654 experiment 0.925095029011494 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KMT2E ENSG00000005483 CDS Human protein_coding chr7:104717824 chr7:104717836 synonymous SNV . 0 33 hm5C_associated_SNPs_46687 0 0 1 0 1 Cytosol 1 0.500231643994973 0.523938417434692 0.999536712010054 hm5C_site_45346 DeepMRMD:0.523938417434692;iRNA_m5C:0.999536712010054 45347 chr12 109637325 109637325 1 + G A LAML 109637339 + 109637319 109637359 41 GGCCACGTTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT GGCCACATTGAGGCTGGGAGCAGCTACGCTGAGATGGAGGT < 41bp 1 0.244657361214408 1 0.688476145267487 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control ACACB ENSG00000076555 CDS Human protein_coding chr12:109637339 chr12:109637325 nonsynonymous SNV 0.827 1 7 hm5C_associated_SNPs_46688 0 0 1 0 1 Nucleus 1 0.500231643681143 0.623047709465026 0.999536712637715 hm5C_site_45347 DeepMRMD:0.623047709465026;iRNA_m5C:0.999536712637715 45348 chr16 31473266 31473266 1 + A G LAML 31473271 + 31473251 31473291 41 CTTCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGC CTTCAGTGCATGAAGGCAGACAGCATCCAGAACCGAACGGC < 41bp 1 0.685863288204596 1 0.457324326038361 experiment 0.628273423590808 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31473271 chr16:31473266 nonsynonymous SNV 0.998 0 16 hm5C_associated_SNPs_46689 0 0 1 0 2 cytosol 1 0.500231643840477 1 0.999536712319045 hm5C_site_45348 DeepMRMD:1;iRNA_m5C:0.999536712319045 45349 chr11 14666572 14666572 1 + G A LAML 14666571 + 14666551 14666591 41 TTGCAAAATATTCAGGAGACCGTCGTTGCCTTGTATTTCCA TTGCAAAATATTCAGGAGACCATCGTTGCCTTGTATTTCCA < 41bp 1 0.163974511955926 1 0.070493072271347 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PDE3B ENSG00000152270 CDS Human protein_coding chr11:14666571 chr11:14666572 synonymous SNV . 0 22 hm5C_associated_SNPs_46690 0 0 1 0 1 chromatin 1 0.500235002327307 1 0.999529995345387 hm5C_site_45349 DeepMRMD:1;iRNA_m5C:0.999529995345387 45350 chrX 7171325 7171325 1 + G T LAML 7171312 + 7171292 7171332 41 GCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGA GCAGCATCAAGGCCGAACATCATCCTGGTGATGTCTGACGA < 41bp 1 0.296560972651648 1 0.0658527612686157 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control STS ENSG00000101846 CDS Human protein_coding chrX:7171312 chrX:7171325 nonsynonymous SNV 0.965 5 34 hm5C_associated_SNPs_46692 0 0 0 0 1 Cytosol 1 0.500226386351435 1 0.999547227297129 hm5C_site_45350 DeepMRMD:1;iRNA_m5C:0.999547227297129 45351 chr17 46128919 46128919 1 + C T LAML 46128901 + 46128881 46128921 41 CAGGCCCAGACAACGGGGTGCGAGAAAGCGAAACGGAGCAG CAGGCCCAGACAACGGGGTGCGAGAAAGCGAAACGGAGTAG < 41bp 1 0.641384099931389 1 0.400146305561066 experiment 0.717231800137222 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128901 chr17:46128919 stopgain 1.000 0 39 hm5C_associated_SNPs_46693 0 0 1 0 1 Ribosome 1 0.50023166689397 1 0.999536666212061 hm5C_site_45351 DeepMRMD:1;iRNA_m5C:0.999536666212061 45352 chr17 46128919 46128919 1 + C T LAML 46128927 + 46128907 46128947 41 AGCGAAACGGAGCAGGGATTCGGTGAAGATTTGGAGGATTT AGCGAAACGGAGTAGGGATTCGGTGAAGATTTGGAGGATTT < 41bp 1 0.602340952074109 1 0.597232460975647 experiment 0.795318095851782 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46128927 chr17:46128919 stopgain 1.000 0 13 hm5C_associated_SNPs_46696 0 0 1 0 1 Ribosome 1 0.500231643921092 0.805535078048706 0.999536712157815 hm5C_site_45352 DeepMRMD:0.805535078048706;iRNA_m5C:0.999536712157815 45353 chr19 49652965 49652965 1 + G A LAML 49652948 + 49652928 49652968 41 GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAG GAGCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTACAG < 41bp 1 0.0803373137560852 1 0.124985456466675 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652948 chr19:49652965 synonymous SNV . 0 38 hm5C_associated_SNPs_46697 0 0 0 0 1 Cytosol 1 0.500231643901099 1 0.999536712197803 hm5C_site_45353 DeepMRMD:1;iRNA_m5C:0.999536712197803 45354 chr19 49652965 49652965 1 + G A LAML 49652950 + 49652930 49652970 41 GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCC GCCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTACAGCC < 41bp 1 0.0547705433430793 1 0.0563271641731262 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652950 chr19:49652965 synonymous SNV . 0 36 hm5C_associated_SNPs_46698 0 0 0 0 1 Cytosol 1 0.500231646703328 1 0.999536706593343 hm5C_site_45354 DeepMRMD:1;iRNA_m5C:0.999536706593343 45355 chr19 49652965 49652965 1 + G A LAML 49652951 + 49652931 49652971 41 CCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCA CCCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTACAGCCA < 41bp 1 0.0404553662721691 1 0.0455279946327209 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652951 chr19:49652965 synonymous SNV . 0 35 hm5C_associated_SNPs_46699 0 0 0 0 1 Cytosol 1 0.500231643921092 1 0.999536712157817 hm5C_site_45355 DeepMRMD:1;iRNA_m5C:0.999536712157817 45356 chr19 49652965 49652965 1 + G A LAML 49652952 + 49652932 49652972 41 CCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTGCAGCCAG CCTGGGCTCTCCGGGGCTCCCTCTCCGCAAGCTACAGCCAG < 41bp 1 0.208131435684573 1 0.43953213095665 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652952 chr19:49652965 synonymous SNV . 0 34 hm5C_associated_SNPs_46700 0 0 0 0 1 Cytosol 1 0.500232989780817 1 0.999534020438367 hm5C_site_45356 DeepMRMD:1;iRNA_m5C:0.999534020438367 45357 chr9 96323483 96323483 1 + C T LAML 96323490 + 96323470 96323510 41 GGGCCGTGGGGGCCGGGGGCCTTTCCCCCTGCAGGTGGTTT GGGCCGTGGGGGCTGGGGGCCTTTCCCCCTGCAGGTGGTTT < 41bp 1 0.048588605120707 1 0.0615107119083405 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control FAM120A ENSG00000048828 CDS Human protein_coding chr9:96323490 chr9:96323483 nonsynonymous SNV 0.999 4 14 hm5C_associated_SNPs_46701 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921092 1 0.999536712157815 hm5C_site_45357 DeepMRMD:1;iRNA_m5C:0.999536712157815 45358 chr3 49720264 49720264 1 + G A LAML 49720263 + 49720243 49720283 41 TTCCTGGGGCTGCAACAGCTCGGTGTCTTGCAGGTGCGTGG TTCCTGGGGCTGCAACAGCTCAGTGTCTTGCAGGTGCGTGG < 41bp 1 0.404510426532256 1 0.217008590698242 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control APEH ENSG00000164062 CDS Human protein_coding chr3:49720263 chr3:49720264 synonymous SNV . 0 22 hm5C_associated_SNPs_46702 0 0 0 0 1 Cytosol 1 0.500231530663084 1 0.999536938673833 hm5C_site_45358 DeepMRMD:1;iRNA_m5C:0.999536938673833 45359 chr8 30332325 30332325 1 + C A LAML 30332319 + 30332299 30332339 41 GGACCCTATTTGTCAGTGGCCTTCCTCTGGATATCAAACCT GGACCCTATTTGTCAGTGGCCTTCCTATGGATATCAAACCT < 41bp 1 0.0784029625722687 1 0.0345578193664551 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332319 chr8:30332325 nonsynonymous SNV 0.994 1 27 hm5C_associated_SNPs_46703 0 0 1 0 2 Nucleus 1 0.500231641807568 1 0.999536716384864 hm5C_site_45359 DeepMRMD:1;iRNA_m5C:0.999536716384864 45360 chr20 37570735 37570735 1 + G A LAML 37570736 + 37570716 37570756 41 TCTCAATTTCTGGATATGTGCATGGATCTGAAAGTTCATCC TCTCAATTTCTGGATATGTACATGGATCTGAAAGTTCATCC < 41bp 1 0.474776149159339 1 0.178405523300171 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570736 chr20:37570735 nonsynonymous SNV 1.000 4 20 hm5C_associated_SNPs_46704 0 0 1 0 1 Ribosome 1 0.500231643921089 1 0.999536712157822 hm5C_site_45360 DeepMRMD:1;iRNA_m5C:0.999536712157822 45361 chr16 87436556 87436556 1 + G A LAML 87436562 + 87436542 87436582 41 CTCAATGCTAATCAGGCCTTCTTCCTGTTGGTGAACGGACA CTCAATGCTAATCAAGCCTTCTTCCTGTTGGTGAACGGACA < 41bp 1 0.0746155237885726 1 0.121186017990112 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient MAP1LC3B ENSG00000140941 CDS Human protein_coding chr16:87436562 chr16:87436556 synonymous SNV . 0 15 hm5C_associated_SNPs_46705 0 0 0 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45361 DeepMRMD:1;iRNA_m5C:0.999536712157815 45362 chr1 145539093 145539093 1 + T C LAML 145539084 + 145539064 145539104 41 CTATCACTGTCTCAAGTCATCACTAACAATGTGAGTCTGGT CTATCACTGTCTCAAGTCATCACTAACAACGTGAGTCTGGT < 41bp 1 0.125296778115137 1 0.273528158664703 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control ITGA10 ENSG00000143127 CDS Human protein_coding chr1:145539084 chr1:145539093 synonymous SNV . 0 30 hm5C_associated_SNPs_46706 0 0 0 0 1 exosome 1 0.500231642012228 1 0.999536715975543 hm5C_site_45362 DeepMRMD:1;iRNA_m5C:0.999536715975543 45363 chr2 27277590 27277590 1 + G A LAML 27277595 + 27277575 27277615 41 TCACTTCCTGCCATGGGCTTCGAGAAGATCGAGAGCCCCGT TCACTTCCTGCCATGAGCTTCGAGAAGATCGAGAGCCCCGT < 41bp 1 0.655587359370137 1 0.758910536766052 experiment 0.688825281259726 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27277595 chr2:27277590 nonsynonymous SNV 0.999 4 16 hm5C_associated_SNPs_46707 0 0 1 0 1 Cytosol 1 0.500231643922214 0.482178926467896 0.999536712155572 hm5C_site_45363 DeepMRMD:0.482178926467896;iRNA_m5C:0.999536712155572 45364 chr22 38021843 38021843 1 + T C LAML 38021859 + 38021839 38021879 41 GATCTCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCAC GATCCCCCGCCTGCGGGCACCACCTACCCAGCTATGCCCAC < 41bp 1 0.333898255230926 1 0.273749887943268 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021859 chr22:38021843 nonsynonymous SNV 0.902 0 5 hm5C_associated_SNPs_46708 0 0 1 0 1 chromatin 1 0.500257944459192 1 0.999484111081616 hm5C_site_45364 DeepMRMD:1;iRNA_m5C:0.999484111081616 45365 chr21 30714966 30714966 1 + C A LAML 30714981 + 30714961 30715001 41 CTGACCGGCCTCCAGCAGTGCTGCCTCCCTGTGCCAGAGGA CTGACAGGCCTCCAGCAGTGCTGCCTCCCTGTGCCAGAGGA < 41bp 1 0.310600254705105 1 0.133064925670624 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control BACH1 ENSG00000156273 CDS Human protein_coding chr21:30714981 chr21:30714966 synonymous SNV . 0 6 hm5C_associated_SNPs_46709 0 0 1 0 0 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_45365 DeepMRMD:1;iRNA_m5C:0.999536712157815 45366 chr7 99956349 99956349 1 + G T LAML 99956353 + 99956333 99956373 41 CCAAGCTACCTTTATGGGGTCACTCAACCAAAACACCTCTC CCAAGCTACCTTTATGTGGTCACTCAACCAAAACACCTCTC < 41bp 1 0.107039044524856 1 0.0358265042304993 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control PILRB ENSG00000121716 CDS Human protein_coding chr7:99956353 chr7:99956349 nonsynonymous SNV 0.001 3 17 hm5C_associated_SNPs_46710 0 0 0 0 1 Cytosol 1 0.500231643921121 1 0.999536712157757 hm5C_site_45366 DeepMRMD:1;iRNA_m5C:0.999536712157757 45367 chr12 54394196 54394196 1 + T C LAML 54394180 + 54394160 54394200 41 GCACGTCGTGGGCGCCCGTGCCCTCTCAGTCGTCCGTGGTA GCACGTCGTGGGCGCCCGTGCCCTCTCAGTCGTCCGCGGTA < 41bp 1 0.214204972025928 1 0.0515020191669464 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54394180 chr12:54394196 nonsynonymous SNV 0.999 2 37 hm5C_associated_SNPs_46711 0 0 1 0 0 chromatin 1 0.500231643909083 1 0.999536712181834 hm5C_site_45367 DeepMRMD:1;iRNA_m5C:0.999536712181834 45368 chr15 57554384 57554384 1 + T A LAML 57554365 + 57554345 57554385 41 GTCTAGTACAGTCACTACTTCAAGCACAGACCTGAACCATA GTCTAGTACAGTCACTACTTCAAGCACAGACCTGAACCAAA < 41bp 1 0.225228212236365 1 0.676103591918945 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554365 chr15:57554384 nonsynonymous SNV 0.999 2 40 hm5C_associated_SNPs_46713 0 0 1 0 2 Cytosol 1 0.5002394577266 0.64779281616211 0.999521084546801 hm5C_site_45368 DeepMRMD:0.64779281616211;iRNA_m5C:0.999521084546801 45369 chr15 57554384 57554384 1 + T A LAML 57554369 + 57554349 57554389 41 AGTACAGTCACTACTTCAAGCACAGACCTGAACCATAAAAC AGTACAGTCACTACTTCAAGCACAGACCTGAACCAAAAAAC < 41bp 1 0.321078386081265 1 0.222618937492371 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554369 chr15:57554384 nonsynonymous SNV 0.999 2 36 hm5C_associated_SNPs_46714 0 0 1 0 2 Cytosol 1 0.499529605656256 1 1 hm5C_site_45369 DeepMRMD:1;iRNA_m5C:1 45370 chr15 57554384 57554384 1 + T A LAML 57554371 + 57554351 57554391 41 TACAGTCACTACTTCAAGCACAGACCTGAACCATAAAACAC TACAGTCACTACTTCAAGCACAGACCTGAACCAAAAAACAC < 41bp 1 0.134361762554516 1 0.155912965536118 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554371 chr15:57554384 nonsynonymous SNV 0.999 2 34 hm5C_associated_SNPs_46715 0 0 1 0 2 Cytosol 1 0.500212337700812 1 0.999575324598377 hm5C_site_45370 DeepMRMD:1;iRNA_m5C:0.999575324598377 45371 chr15 57554384 57554384 1 + T A LAML 57554381 + 57554361 57554401 41 ACTTCAAGCACAGACCTGAACCATAAAACACAAGAAAATTA ACTTCAAGCACAGACCTGAACCAAAAAACACAAGAAAATTA < 41bp 1 0.235002248299787 1 0.179128795862198 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554381 chr15:57554384 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_46716 0 0 1 0 2 Cytosol 1 0.500231740795508 1 0.999536518408984 hm5C_site_45371 DeepMRMD:1;iRNA_m5C:0.999536518408984 45372 chr15 57554384 57554384 1 + T A LAML 57554382 + 57554362 57554402 41 CTTCAAGCACAGACCTGAACCATAAAACACAAGAAAATTAT CTTCAAGCACAGACCTGAACCAAAAAACACAAGAAAATTAT < 41bp 1 0.389510621043952 1 0.552334547042847 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554382 chr15:57554384 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_46717 0 0 1 0 2 Cytosol 1 0.500231644525602 0.895330905914306 0.999536710948796 hm5C_site_45372 DeepMRMD:0.895330905914306;iRNA_m5C:0.999536710948796 45373 chr15 57554384 57554384 1 + T A LAML 57554389 + 57554369 57554409 41 CACAGACCTGAACCATAAAACACAAGAAAATTATAGAGGTA CACAGACCTGAACCAAAAAACACAAGAAAATTATAGAGGTA < 41bp 1 0.540756308095501 1 0.611500024795532 experiment 0.918487383808998 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control TCF12 ENSG00000140262 CDS Human protein_coding chr15:57554389 chr15:57554384 nonsynonymous SNV 0.999 2 16 hm5C_associated_SNPs_46718 0 0 1 0 2 Cytosol 1 0.500231643921092 0.776999950408936 0.999536712157815 hm5C_site_45373 DeepMRMD:0.776999950408936;iRNA_m5C:0.999536712157815 45374 chr3 37340507 37340507 1 + T A LAML 37340497 + 37340477 37340517 41 TGGATGAAAGACTTCAAGAACTAGAAAAGATAAAGGTAAAA TGGATGAAAGACTTCAAGAACTAGAAAAGAAAAAGGTAAAA < 41bp 1 0.581951019148268 1 0.577243030071259 experiment 0.836097961703464 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37340497 chr3:37340507 nonsynonymous SNV 1.000 0 31 hm5C_associated_SNPs_46719 0 0 1 0 1 Cytosol 1 0.500231644009866 0.845513939857482 0.999536711980268 hm5C_site_45374 DeepMRMD:0.845513939857482;iRNA_m5C:0.999536711980268 45375 chr7 100200147 100200147 1 + C T LAML 100200134 + 100200114 100200154 41 CCCTCCTCACTGCCTGCGCCCTGCTGCCTTTTGCCCAGGGC CCCTCCTCACTGCCTGCGCCCTGCTGCCTTTTGTCCAGGGC < 41bp 1 0.273779220356739 1 0.132728427648544 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100200134 chr7:100200147 nonsynonymous SNV 0.920 1 34 hm5C_associated_SNPs_46720 0 0 1 0 1 Endoplasmic reticulum 1 0.500231643921085 1 0.999536712157831 hm5C_site_45375 DeepMRMD:1;iRNA_m5C:0.999536712157831 45376 chr2 170471230 170471230 1 + T A LAML 170471216 + 170471196 170471236 41 GGATACTCAGTTGTGGAGAGCTGATTCCCAAATCTAAAGGT GGATACTCAGTTGTGGAGAGCTGATTCCCAAATCAAAAGGT < 41bp 1 0.329971293227451 1 0.232607901096344 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control PPIG ENSG00000138398 CDS Human protein_coding chr2:170471216 chr2:170471230 synonymous SNV . 0 35 hm5C_associated_SNPs_46721 0 0 1 0 1 Cytosol 1 0.500231643240635 1 0.99953671351873 hm5C_site_45376 DeepMRMD:1;iRNA_m5C:0.99953671351873 45377 chr16 67915638 67915638 1 + G T LAML 67915625 + 67915605 67915645 41 TTTGGCAACAGCAGAGAGAGCTGGCAGAGCTGCGGCACAGC TTTGGCAACAGCAGAGAGAGCTGGCAGAGCTGCTGCACAGC < 41bp 1 0.470796271382578 1 0.232874602079391 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915625 chr16:67915638 nonsynonymous SNV 0.819 0 34 hm5C_associated_SNPs_46722 0 0 1 0 1 Cytosol 1 0.500256090318848 1 0.999487819362305 hm5C_site_45377 DeepMRMD:1;iRNA_m5C:0.999487819362305 45378 chr16 67915638 67915638 1 + G T LAML 67915640 + 67915620 67915660 41 GAGAGCTGGCAGAGCTGCGGCACAGCCAGGAAGAGCTGCTG GAGAGCTGGCAGAGCTGCTGCACAGCCAGGAAGAGCTGCTG < 41bp 1 0.462796610360034 1 0.148676097393036 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915640 chr16:67915638 nonsynonymous SNV 0.819 0 19 hm5C_associated_SNPs_46723 0 0 1 0 1 Cytosol 1 0.500231643923034 1 0.999536712153932 hm5C_site_45378 DeepMRMD:1;iRNA_m5C:0.999536712153932 45379 chr1 112999442 112999442 1 + G A LAML 112999436 + 112999416 112999456 41 TAAGCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACC TAAGCGTTTATTGGGGTCATCAGCTAACAGCCCTGGCTACC < 41bp 1 0.501585716276112 1 0.585218369960785 experiment 0.996828567447776 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999436 chr1:112999442 nonsynonymous SNV 0.929 1 27 hm5C_associated_SNPs_46724 0 0 0 0 0 Ribosome 1 0.500231643921092 0.82956326007843 0.999536712157815 hm5C_site_45379 DeepMRMD:0.82956326007843;iRNA_m5C:0.999536712157815 45380 chr1 112999442 112999442 1 + G A LAML 112999439 + 112999419 112999459 41 GCGTTTATTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGT GCGTTTATTGGGGTCATCAGCTAACAGCCCTGGCTACCAGT < 41bp 1 0.300095890544019 1 0.190077006816864 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999439 chr1:112999442 nonsynonymous SNV 0.929 1 24 hm5C_associated_SNPs_46725 0 0 0 0 0 Ribosome 1 0.500231643921066 1 0.999536712157868 hm5C_site_45380 DeepMRMD:1;iRNA_m5C:0.999536712157868 45381 chr1 112999442 112999442 1 + G A LAML 112999446 + 112999426 112999466 41 TTGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTA TTGGGGTCATCAGCTAACAGCCCTGGCTACCAGTCATCGTA < 41bp 1 0.163281836556432 1 0.23318737745285 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999446 chr1:112999442 nonsynonymous SNV 0.929 1 17 hm5C_associated_SNPs_46726 0 0 0 0 0 Ribosome 1 0.500231643921088 1 0.999536712157823 hm5C_site_45381 DeepMRMD:1;iRNA_m5C:0.999536712157823 45382 chr1 112999442 112999442 1 + G A LAML 112999447 + 112999427 112999467 41 TGGGGTCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTAC TGGGGTCATCAGCTAACAGCCCTGGCTACCAGTCATCGTAC < 41bp 1 0.34481747396719 1 0.0903781056404114 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999447 chr1:112999442 nonsynonymous SNV 0.929 1 16 hm5C_associated_SNPs_46727 0 0 0 0 0 Ribosome 1 0.500234429415681 1 0.999531141168637 hm5C_site_45382 DeepMRMD:1;iRNA_m5C:0.999531141168637 45383 chr1 112999442 112999442 1 + G A LAML 112999452 + 112999432 112999472 41 TCATCAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGT TCATCAGCTAACAGCCCTGGCTACCAGTCATCGTACCAAGT < 41bp 1 0.133868053361415 1 0.0150573253631592 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999452 chr1:112999442 nonsynonymous SNV 0.929 1 11 hm5C_associated_SNPs_46728 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45383 DeepMRMD:1;iRNA_m5C:0.999536712157815 45384 chr1 112999442 112999442 1 + G A LAML 112999455 + 112999435 112999475 41 TCAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGG TCAGCTAACAGCCCTGGCTACCAGTCATCGTACCAAGTAGG < 41bp 1 0.131010573638058 1 0.106193870306015 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999455 chr1:112999442 nonsynonymous SNV 0.929 1 8 hm5C_associated_SNPs_46729 0 0 0 0 0 Ribosome 1 0.50023164392146 1 0.999536712157081 hm5C_site_45384 DeepMRMD:1;iRNA_m5C:0.999536712157081 45385 chr1 112999442 112999442 1 + G A LAML 112999456 + 112999436 112999476 41 CAGCTAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGG CAGCTAACAGCCCTGGCTACCAGTCATCGTACCAAGTAGGG < 41bp 1 0.173625019715473 1 0.457727611064911 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999456 chr1:112999442 nonsynonymous SNV 0.929 1 7 hm5C_associated_SNPs_46730 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45385 DeepMRMD:1;iRNA_m5C:0.999536712157815 45386 chr1 112999442 112999442 1 + G A LAML 112999460 + 112999440 112999480 41 TAGCAGCCCTGGCTACCAGTCATCGTACCAAGTAGGGATCA TAACAGCCCTGGCTACCAGTCATCGTACCAAGTAGGGATCA < 41bp 1 0.401178035482206 1 0.0411883294582367 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112999460 chr1:112999442 nonsynonymous SNV 0.929 1 3 hm5C_associated_SNPs_46731 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45386 DeepMRMD:1;iRNA_m5C:0.999536712157815 45387 chr6 168265394 168265394 1 + A T LAML 168265414 + 168265394 168265434 41 AGTATTCACTCTATGAAGTGCATGTCAGCGGAGGTCAGTGT TGTATTCACTCTATGAAGTGCATGTCAGCGGAGGTCAGTGT < 41bp 1 0.0863117761446237 1 0.0155148506164551 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control AFDN ENSG00000130396 CDS Human protein_coding chr6:168265414 chr6:168265394 nonsynonymous SNV 0.985 3 1 hm5C_associated_SNPs_46734 0 0 1 0 0 unknown 1 0.500231599367224 1 0.999536801265551 hm5C_site_45387 DeepMRMD:1;iRNA_m5C:0.999536801265551 45388 chr11 32953888 32953888 1 + T A LAML 32953900 + 32953880 32953920 41 AGTCATCTTTATCCTGTAGCCCAATTGGAGATTCCACTCAG AGTCATCTATATCCTGTAGCCCAATTGGAGATTCCACTCAG < 41bp 1 0.23263395070382 1 0.198721557855606 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QSER1 ENSG00000060749 CDS Human protein_coding chr11:32953900 chr11:32953888 nonsynonymous SNV 0.999 1 9 hm5C_associated_SNPs_46735 0 0 1 0 1 Cytosol 1 0.500231657978597 1 0.999536684042807 hm5C_site_45388 DeepMRMD:1;iRNA_m5C:0.999536684042807 45389 chr11 32953888 32953888 1 + T A LAML 32953901 + 32953881 32953921 41 GTCATCTTTATCCTGTAGCCCAATTGGAGATTCCACTCAGG GTCATCTATATCCTGTAGCCCAATTGGAGATTCCACTCAGG < 41bp 1 0.103070777169769 1 0.11656054854393 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control QSER1 ENSG00000060749 CDS Human protein_coding chr11:32953901 chr11:32953888 nonsynonymous SNV 0.999 1 8 hm5C_associated_SNPs_46736 0 0 1 0 1 Cytosol 1 0.500231643921093 1 0.999536712157815 hm5C_site_45389 DeepMRMD:1;iRNA_m5C:0.999536712157815 45390 chr11 31392353 31392353 1 + C A LAML 31392369 + 31392349 31392389 41 AGACCCATCTGCAAATATATCAGACCTAAAACAAAAATATC AGACACATCTGCAAATATATCAGACCTAAAACAAAAATATC < 41bp 1 0.347079464558493 1 0.208966732025146 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNAJC24 ENSG00000170946 CDS Human protein_coding chr11:31392369 chr11:31392353 nonsynonymous SNV 0.996 3 5 hm5C_associated_SNPs_46737 0 0 1 0 2 Cytosol 1 0.500231643947304 1 0.999536712105392 hm5C_site_45390 DeepMRMD:1;iRNA_m5C:0.999536712105392 45391 chrX 47063063 47063063 1 + C T LAML 47063072 + 47063052 47063092 41 CAAATCTGAATCGACAGTTTCTTTTCCGGCCCTGGGATGTC CAAATCTGAATTGACAGTTTCTTTTCCGGCCCTGGGATGTC < 41bp 1 0.0309941265320563 1 0.0192440450191498 experiment 1 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control UBA1 ENSG00000130985 CDS Human protein_coding chrX:47063072 chrX:47063063 stopgain 0.997 1 12 hm5C_associated_SNPs_46738 0 0 1 0 1 Nucleus 1 0.500231643921071 1 0.999536712157858 hm5C_site_45391 DeepMRMD:1;iRNA_m5C:0.999536712157858 45392 chr14 73576082 73576082 1 + G T LAML 73576075 + 73576055 73576095 41 GTGCTCTTCAGAAAAGGTTGCGTGATAGAGAAAAGGAAATG GTGCTCTTCAGAAAAGGTTGCGTGATATAGAAAAGGAAATG < 41bp 1 0.417024961144436 1 0.236188590526581 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control RBM25 ENSG00000119707 CDS Human protein_coding chr14:73576075 chr14:73576082 nonsynonymous SNV 1.000 3 28 hm5C_associated_SNPs_46739 0 0 1 0 1 Nucleus 1 0.500231643898911 1 0.999536712202179 hm5C_site_45392 DeepMRMD:1;iRNA_m5C:0.999536712202179 45393 chr20 31374345 31374345 1 + A G LAML 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGGGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG < 41bp 1 0.365881691163258 1 0.470959663391113 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374345 nonsynonymous SNV 0.793 2 5 hm5C_associated_SNPs_46740 0 0 0 0 1 chromatin 1 0.500231643921089 1 0.999536712157821 hm5C_site_45393 DeepMRMD:1;iRNA_m5C:0.999536712157821 45394 chr20 31374345 31374345 1 + A G LAML 31374362 + 31374342 31374382 41 GGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG GGGGGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCGG < 41bp 1 0.661462561424395 1 0.569933533668518 experiment 0.677074877151211 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374362 chr20:31374345 nonsynonymous SNV 0.793 2 4 hm5C_associated_SNPs_46741 0 0 0 0 1 chromatin 1 0.5002316439211 0.860132932662964 0.999536712157801 hm5C_site_45394 DeepMRMD:0.860132932662964;iRNA_m5C:0.999536712157801 45395 chr19 54652149 54652149 1 + G C LAML 54652142 + 54652122 54652162 41 AGCTCCCAGTGGGCCCAGCACGACCCAGCCCCGGCCCCCCA AGCTCCCAGTGGGCCCAGCACGACCCACCCCCGGCCCCCCA < 41bp 1 0.593816580109077 1 0.74440735578537 experiment 0.812366839781846 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54652142 chr19:54652149 nonsynonymous SNV 0.982 1 28 hm5C_associated_SNPs_46742 0 0 1 0 0 Ribosome 1 0.500231685995508 0.51118528842926 0.999536628008984 hm5C_site_45395 DeepMRMD:0.51118528842926;iRNA_m5C:0.999536628008984 45396 chr20 30898672 30898672 1 + G A LAML 30898670 + 30898650 30898690 41 AATTCCAGGAAGAGATTGCTCGGCTCAAGGCCCAGCTGGAA AATTCCAGGAAGAGATTGCTCGACTCAAGGCCCAGCTGGAA < 41bp 1 0.495540290073834 1 0.500047445297241 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898670 chr20:30898672 synonymous SNV . 0 23 hm5C_associated_SNPs_46743 0 0 1 0 1 Ribosome 1 0.500231643921086 0.999905109405518 0.999536712157828 hm5C_site_45396 DeepMRMD:0.999905109405518;iRNA_m5C:0.999536712157828 45397 chr17 38318113 38318113 1 + G A LAML 38318128 + 38318108 38318148 41 GAAAAGCCTGACACCAAAAGCACTGTGACTGGAGAGAGGCA GAAAAACCTGACACCAAAAGCACTGTGACTGGAGAGAGGCA < 41bp 1 0.277665123411632 1 0.205016165971756 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318128 chr17:38318113 synonymous SNV . 0 6 hm5C_associated_SNPs_46745 0 0 1 0 1 Ribosome 1 0.500231669923308 1 0.999536660153384 hm5C_site_45397 DeepMRMD:1;iRNA_m5C:0.999536660153384 45398 chr12 110765491 110765491 1 + A T LAML 110765502 + 110765482 110765522 41 AACTAGATGAATTTGGGGAACAGCTTTCCAAAGTCATCTCC AACTAGATGTATTTGGGGAACAGCTTTCCAAAGTCATCTCC < 41bp 1 0.362029744635907 1 0.214482694864273 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110765502 chr12:110765491 nonsynonymous SNV 1.000 3 10 hm5C_associated_SNPs_46746 0 0 1 0 0 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45398 DeepMRMD:1;iRNA_m5C:0.999536712157815 45399 chr1 45218810 45218810 1 + C G LAML 45218818 + 45218798 45218838 41 CTACAGCTGCCCCCACTAGGCCTTCCTGCCCTGCAGTGGCT CTACAGCTGCCCGCACTAGGCCTTCCTGCCCTGCAGTGGCT < 41bp 1 0.0275065329254985 1 0.0463577508926392 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218818 chr1:45218810 nonsynonymous SNV 0.019 0 13 hm5C_associated_SNPs_46747 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45399 DeepMRMD:1;iRNA_m5C:0.999536712157815 45400 chr1 45218810 45218810 1 + C G LAML 45218822 + 45218802 45218842 41 AGCTGCCCCCACTAGGCCTTCCTGCCCTGCAGTGGCTGAAA AGCTGCCCGCACTAGGCCTTCCTGCCCTGCAGTGGCTGAAA < 41bp 1 0.0802475633335019 1 0.104266464710236 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control KIF2C ENSG00000142945 CDS Human protein_coding chr1:45218822 chr1:45218810 nonsynonymous SNV 0.019 0 9 hm5C_associated_SNPs_46748 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45400 DeepMRMD:1;iRNA_m5C:0.999536712157815 45401 chr21 33887127 33887127 1 + A C LAML 33887128 + 33887108 33887148 41 TCTCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCT TCTCTTCCTCCTGCAGCCCCCCCGGAGAGAGCTGCCCTGCT < 41bp 1 0.431969608334761 1 0.617196679115295 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887128 chr21:33887127 nonsynonymous SNV 0.966 4 20 hm5C_associated_SNPs_46749 0 0 0 0 1 Ribosome 1 0.500231643921092 0.76560664176941 0.999536712157815 hm5C_site_45401 DeepMRMD:0.76560664176941;iRNA_m5C:0.999536712157815 45402 chr21 33887127 33887127 1 + A C LAML 33887130 + 33887110 33887150 41 TCTTCCTCCTGCAGCCCACCCGGAGAGAGCTGCCCTGCTGT TCTTCCTCCTGCAGCCCCCCCGGAGAGAGCTGCCCTGCTGT < 41bp 1 0.631243518093982 1 0.83766233921051 experiment 0.737512963812036 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control EVA1C ENSG00000166979 CDS Human protein_coding chr21:33887130 chr21:33887127 nonsynonymous SNV 0.966 4 18 hm5C_associated_SNPs_46751 0 0 0 0 1 Ribosome 1 0.500231643921092 0.32467532157898 0.999536712157815 hm5C_site_45402 DeepMRMD:0.32467532157898;iRNA_m5C:0.999536712157815 45403 chr12 57892312 57892312 1 + T C LAML 57892311 + 57892291 57892331 41 GGACTAACCCCCCAGGAGATCTGCGACAAGTACCACATCAT GGACTAACCCCCCAGGAGATCCGCGACAAGTACCACATCAT < 41bp 1 0.366220512026379 1 0.34752094745636 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74773;RNA-BisSeq;Huh7;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control MARS ENSG00000166986 CDS Human protein_coding chr12:57892311 chr12:57892312 nonsynonymous SNV 0.841 4 22 hm5C_associated_SNPs_46752 0 0 1 0 1 Cytosol 1 0.500231638487056 1 0.999536723025888 hm5C_site_45403 DeepMRMD:1;iRNA_m5C:0.999536723025888 45404 chr17 7483880 7483880 1 + C G LAML 7483883 + 7483863 7483903 41 TCTCATTCCCCTATGGACACCTCAGCTTTGGATTCATGCAG TCTCATTCCCCTATGGAGACCTCAGCTTTGGATTCATGCAG < 41bp 1 0.404284287115585 1 0.273457229137421 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74774;RNA-BisSeq;MRC-5;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control CD68 ENSG00000129226 CDS Human protein_coding chr17:7483883 chr17:7483880 nonsynonymous SNV 0.993 1 18 hm5C_associated_SNPs_46753 0 0 0 0 2 Endoplasmic reticulum 1 0.500231643977024 1 0.999536712045952 hm5C_site_45404 DeepMRMD:1;iRNA_m5C:0.999536712045952 45405 chr17 46133907 46133907 1 + C A LAML 46133913 + 46133893 46133933 41 AGGGCGCGGAAGCTCTGGCACGGAACCTGCTAGTGGATGGA AGGGCGCGGAAGCTATGGCACGGAACCTGCTAGTGGATGGA < 41bp 1 0.690942139394317 1 0.596982419490814 experiment 0.618115721211366 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46133913 chr17:46133907 nonsynonymous SNV 0.981 3 15 hm5C_associated_SNPs_46754 0 0 1 0 1 Ribosome 1 0.500231643701005 0.806035161018372 0.99953671259799 hm5C_site_45405 DeepMRMD:0.806035161018372;iRNA_m5C:0.99953671259799 45406 chr17 46133907 46133907 1 + C A LAML 46133918 + 46133898 46133938 41 GCGGAAGCTCTGGCACGGAACCTGCTAGTGGATGGAGAGAC GCGGAAGCTATGGCACGGAACCTGCTAGTGGATGGAGAGAC < 41bp 1 0.12763982229264 1 0.297221779823303 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46133918 chr17:46133907 nonsynonymous SNV 0.981 3 10 hm5C_associated_SNPs_46755 0 0 1 0 1 Ribosome 1 0.500231643921093 1 0.999536712157815 hm5C_site_45406 DeepMRMD:1;iRNA_m5C:0.999536712157815 45407 chr17 46133907 46133907 1 + C A LAML 46133919 + 46133899 46133939 41 CGGAAGCTCTGGCACGGAACCTGCTAGTGGATGGAGAGACT CGGAAGCTATGGCACGGAACCTGCTAGTGGATGGAGAGACT < 41bp 1 0.448944117699554 1 0.111960202455521 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46133919 chr17:46133907 nonsynonymous SNV 0.981 3 9 hm5C_associated_SNPs_46756 0 0 1 0 1 Ribosome 1 0.50023165145941 1 0.999536697081181 hm5C_site_45407 DeepMRMD:1;iRNA_m5C:0.999536697081181 45408 chr3 155629049 155629049 1 + G A LAML 155629040 + 155629020 155629060 41 AGCCAGTCTGTTGAAGAGGCCCTCAAAAAGCTTGGAATTCA AGCCAGTCTGTTGAAGAGGCCCTCAAAAAACTTGGAATTCA < 41bp 1 0.120236107820118 1 0.0672035813331604 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control|28418038;GSE74772;RNA-BisSeq;HCT116;Control GMPS ENSG00000163655 CDS Human protein_coding chr3:155629040 chr3:155629049 synonymous SNV . 0 30 hm5C_associated_SNPs_46757 0 0 1 0 1 Nucleus 1 0.500231643921505 1 0.99953671215699 hm5C_site_45408 DeepMRMD:1;iRNA_m5C:0.99953671215699 45409 chr2 220505238 220505238 1 + C G LAML 220505231 + 220505211 220505251 41 ATCTTCCTGTACATGGGGGTCACGTCCCTGTCTGGTATCCA ATCTTCCTGTACATGGGGGTCACGTCCGTGTCTGGTATCCA < 41bp 1 0.266701775172666 1 0.050756961107254 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505231 chr2:220505238 nonsynonymous SNV 0.977 5 28 hm5C_associated_SNPs_46758 0 0 0 0 2 Cytosol 1 0.500230793846772 1 0.999538412306455 hm5C_site_45409 DeepMRMD:1;iRNA_m5C:0.999538412306455 45410 chr3 38287621 38287621 1 + C T LAML 38287619 + 38287599 38287639 41 CTCCAAGTTCCAGAACAGATCTCTGCTCATCTACCTCAGCC CTCCAAGTTCCAGAACAGATCTTTGCTCATCTACCTCAGCC < 41bp 1 0.204778615427623 1 0.0239401757717133 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38287619 chr3:38287621 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_46759 0 0 1 0 2 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45410 DeepMRMD:1;iRNA_m5C:0.999536712157815 45411 chr7 142460330 142460330 1 + A G LAML 142460315 + 142460295 142460335 41 CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTA CGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCGGGCTA < 41bp 1 0.476345570855089 1 0.304148495197296 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460315 chr7:142460330 nonsynonymous SNV 0.002 1 36 hm5C_associated_SNPs_46760 0 0 0 0 2 Cytosol 1 0.500231643930473 1 0.999536712139054 hm5C_site_45411 DeepMRMD:1;iRNA_m5C:0.999536712139054 45412 chr7 142460330 142460330 1 + A G LAML 142460317 + 142460297 142460337 41 AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAG AGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCGGGCTAAG < 41bp 1 0.248273230869305 1 0.14966344833374 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460317 chr7:142460330 nonsynonymous SNV 0.002 1 34 hm5C_associated_SNPs_46761 0 0 0 0 2 Cytosol 1 0.500231643996836 1 0.999536712006329 hm5C_site_45412 DeepMRMD:1;iRNA_m5C:0.999536712006329 45413 chr7 142460330 142460330 1 + A G LAML 142460318 + 142460298 142460338 41 GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGT GCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCGGGCTAAGT < 41bp 1 0.479715330897475 1 0.275223106145859 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460318 chr7:142460330 nonsynonymous SNV 0.002 1 33 hm5C_associated_SNPs_46762 0 0 0 0 2 Cytosol 1 0.500231643953351 1 0.999536712093299 hm5C_site_45413 DeepMRMD:1;iRNA_m5C:0.999536712093299 45414 chr7 142460330 142460330 1 + A G LAML 142460323 + 142460303 142460343 41 AGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAA AGTGCCTGGATGCTCCTGTGCTGAGCCGGGCTAAGTGTGAA < 41bp 1 0.526371482526388 1 0.0573431551456451 experiment 0.947257034947223 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460323 chr7:142460330 nonsynonymous SNV 0.002 1 28 hm5C_associated_SNPs_46763 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_45414 DeepMRMD:1;iRNA_m5C:0.999536712157815 45415 chr7 142460330 142460330 1 + A G LAML 142460328 + 142460308 142460348 41 CTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTC CTGGATGCTCCTGTGCTGAGCCGGGCTAAGTGTGAAGCCTC < 41bp 1 0.512263693997075 1 0.398479759693146 experiment 0.975472612005849 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460328 chr7:142460330 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_46764 0 0 0 0 2 Cytosol 1 0.500231643937042 1 0.999536712125916 hm5C_site_45415 DeepMRMD:1;iRNA_m5C:0.999536712125916 45416 chr7 142460330 142460330 1 + A G LAML 142460329 + 142460309 142460349 41 TGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCC TGGATGCTCCTGTGCTGAGCCGGGCTAAGTGTGAAGCCTCC < 41bp 1 0.595782534699039 1 0.73170530796051 experiment 0.808434930601922 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460329 chr7:142460330 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_46765 0 0 0 0 2 Cytosol 1 0.500231643919012 0.53658938407898 0.999536712161975 hm5C_site_45416 DeepMRMD:0.53658938407898;iRNA_m5C:0.999536712161975 45417 chr7 142460330 142460330 1 + A G LAML 142460333 + 142460313 142460353 41 TGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACC TGCTCCTGTGCTGAGCCGGGCTAAGTGTGAAGCCTCCTACC < 41bp 1 0.314932756242445 1 0.112585663795471 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460333 chr7:142460330 nonsynonymous SNV 0.002 1 18 hm5C_associated_SNPs_46766 0 0 0 0 2 Cytosol 1 0.500231643921114 1 0.999536712157772 hm5C_site_45417 DeepMRMD:1;iRNA_m5C:0.999536712157772 45418 chr7 142460330 142460330 1 + A G LAML 142460345 + 142460325 142460365 41 GAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA GAGCCGGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTA < 41bp 1 0.039725976894043 1 0.115750014781952 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460345 chr7:142460330 nonsynonymous SNV 0.002 1 6 hm5C_associated_SNPs_46767 0 0 0 0 2 Cytosol 1 0.500231643921093 1 0.999536712157813 hm5C_site_45418 DeepMRMD:1;iRNA_m5C:0.999536712157813 45419 chr7 142460330 142460330 1 + A G LAML 142460346 + 142460326 142460366 41 AGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC AGCCGGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTAC < 41bp 1 0.266554835958083 1 0.511811196804047 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460346 chr7:142460330 nonsynonymous SNV 0.002 1 5 hm5C_associated_SNPs_46768 0 0 0 0 2 Cytosol 1 0.500231642207605 0.976377606391906 0.999536715584791 hm5C_site_45419 DeepMRMD:0.976377606391906;iRNA_m5C:0.999536715584791 45420 chr7 142460330 142460330 1 + A G LAML 142460348 + 142460328 142460368 41 CCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA CCGGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCA < 41bp 1 0.02099596444632 1 0.121339619159698 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460348 chr7:142460330 nonsynonymous SNV 0.002 1 3 hm5C_associated_SNPs_46769 0 0 0 0 2 Cytosol 1 0.500231643921589 1 0.999536712156822 hm5C_site_45420 DeepMRMD:1;iRNA_m5C:0.999536712156822 45421 chr7 142460330 142460330 1 + A G LAML 142460349 + 142460329 142460369 41 CAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG CGGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAG < 41bp 1 0.242817389155104 1 0.225056529045105 experiment 1 Functional Loss 31358969;GSE133671;RNA-BisSeq;T24;NSUN2 deficient|31358969;GSE133672;RNA-BisSeq;T24;Control PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142460349 chr7:142460330 nonsynonymous SNV 0.002 1 2 hm5C_associated_SNPs_46770 0 0 0 0 2 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_45421 DeepMRMD:1;iRNA_m5C:0.999536712157815 45422 chr1 110465815 110465815 1 + G T LAML 110465798 + 110465778 110465818 41 GTTCTTTCAGATGTGGTGACCAAGCCTGATTGCAACTGCCT GTTCTTTCAGATGTGGTGACCAAGCCTGATTGCAACTTCCT < 41bp 1 0.213505529777879 1 0.199723660945892 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control CSF1 ENSG00000184371 CDS Human protein_coding chr1:110465798 chr1:110465815 nonsynonymous SNV 1.000 3 38 hm5C_associated_SNPs_46771 0 0 0 0 1 chromatin 1 0.500231643921436 1 0.999536712157128 hm5C_site_45422 DeepMRMD:1;iRNA_m5C:0.999536712157128 45423 chr20 31374362 31374362 1 + C T LAML 31374361 + 31374341 31374381 41 CGGGAGAGGCACAGGCCTTCCCCACGTTCCACCCGAGGCCG CGGGAGAGGCACAGGCCTTCCTCACGTTCCACCCGAGGCCG < 41bp 1 0.599477055074184 1 0.554981708526611 experiment 0.801045889851632 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374361 chr20:31374362 nonsynonymous SNV 0.192 1 22 hm5C_associated_SNPs_46772 0 0 0 0 1 chromatin 1 0.500231643580729 0.890036582946778 0.999536712838541 hm5C_site_45423 DeepMRMD:0.890036582946778;iRNA_m5C:0.999536712838541 45424 chr18 21495369 21495369 1 + A T LAML 21495376 + 21495356 21495396 41 TCAACACAACTGAAGTGGAGCCTTGTAGAAGGTAAATAAAA TCAACACAACTGATGTGGAGCCTTGTAGAAGGTAAATAAAA < 41bp 1 0.00593002141827093 1 0.0359818637371063 experiment 1 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control LAMA3 ENSG00000053747 CDS Human protein_coding chr18:21495376 chr18:21495369 nonsynonymous SNV 1.000 1 14 hm5C_associated_SNPs_46773 0 0 0 0 1 Cytosol 1 0.500231644087151 1 0.999536711825698 hm5C_site_45424 DeepMRMD:1;iRNA_m5C:0.999536711825698 45425 chr1 109772148 109772148 1 + A G LAML 109772129 + 109772109 109772149 41 GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGAG GGATAAAGTTGGAAGCAGAGCGGTTTGAGAACCTCCGAGGG < 41bp 1 0.575033244198599 1 0.385469138622284 experiment 0.849933511602802 Functional Loss 30526041;GSE122413;RNA-BisSeq;HEK293;Control SARS ENSG00000031698 CDS Human protein_coding chr1:109772129 chr1:109772148 nonsynonymous SNV 0.994 1 40 hm5C_associated_SNPs_46774 0 0 1 0 1 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45425 DeepMRMD:1;iRNA_m5C:0.999536712157815 45426 chr5 7885830 7885830 1 + A T LAML 7885818 + 7885798 7885838 41 TTTGGCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTG TTTGGCTCTTCTCTAGAATACAGACTTTTCCTTTCAGCCTG < 41bp 1 0.424826087235059 1 0.311278820037842 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885818 chr5:7885830 nonsynonymous SNV 0.996 1 33 hm5C_associated_SNPs_46776 0 0 1 0 1 Nucleus 1 0.500231643920682 1 0.999536712158635 hm5C_site_45426 DeepMRMD:1;iRNA_m5C:0.999536712158635 45427 chr5 7885830 7885830 1 + A T LAML 7885822 + 7885802 7885842 41 GCTCTTCTCTAGAATACAGACTTTTCCTATCAGCCTGGAGA GCTCTTCTCTAGAATACAGACTTTTCCTTTCAGCCTGGAGA < 41bp 1 0.0398022315148243 1 0.0267396867275238 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885822 chr5:7885830 nonsynonymous SNV 0.996 1 29 hm5C_associated_SNPs_46777 0 0 1 0 1 Nucleus 1 0.500231643921109 1 0.999536712157781 hm5C_site_45427 DeepMRMD:1;iRNA_m5C:0.999536712157781 45428 chr5 7885830 7885830 1 + A T LAML 7885828 + 7885808 7885848 41 CTCTAGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTT CTCTAGAATACAGACTTTTCCTTTCAGCCTGGAGATGCCTT < 41bp 1 0.0536852524873307 1 0.0900717973709106 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885828 chr5:7885830 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_46778 0 0 1 0 1 Nucleus 1 0.500231643921092 1 0.999536712157815 hm5C_site_45428 DeepMRMD:1;iRNA_m5C:0.999536712157815 45429 chr5 7885830 7885830 1 + A T LAML 7885832 + 7885812 7885852 41 AGAATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGC AGAATACAGACTTTTCCTTTCAGCCTGGAGATGCCTTCAGC < 41bp 1 0.387723262089341 1 0.237009227275848 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885832 chr5:7885830 nonsynonymous SNV 0.996 1 19 hm5C_associated_SNPs_46779 0 0 1 0 1 Nucleus 1 0.500231643969264 1 0.999536712061473 hm5C_site_45429 DeepMRMD:1;iRNA_m5C:0.999536712061473 45430 chr5 7885830 7885830 1 + A T LAML 7885835 + 7885815 7885855 41 ATACAGACTTTTCCTATCAGCCTGGAGATGCCTTCAGCGTG ATACAGACTTTTCCTTTCAGCCTGGAGATGCCTTCAGCGTG < 41bp 1 0.242933286693395 1 0.248867362737656 experiment 1 Functional Loss 31358969;GSE133672;RNA-BisSeq;T24;Control MTRR ENSG00000124275 CDS Human protein_coding chr5:7885835 chr5:7885830 nonsynonymous SNV 0.996 1 16 hm5C_associated_SNPs_46780 0 0 1 0 1 Nucleus 1 0.500231643923937 1 0.999536712152126 hm5C_site_45430 DeepMRMD:1;iRNA_m5C:0.999536712152126 45431 chr6 126210531 126210531 1 + C T LAML 126210539 + 126210519 126210559 41 TTTCTCTTGACCCAGAGGAACGAAAGAAAGCTGAGTCACAA TTTCTCTTGACCTAGAGGAACGAAAGAAAGCTGAGTCACAA < 41bp 1 0.5599240529588 1 0.415461242198944 experiment 0.880151894082401 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control|28418038;GSE74775;RNA-BisSeq;SNB19;Control NCOA7 ENSG00000111912 CDS Human protein_coding chr6:126210539 chr6:126210531 nonsynonymous SNV 0.242 0 13 hm5C_associated_SNPs_46781 0 0 1 0 0 Ribosome 1 0.500231643921115 1 0.999536712157769 hm5C_site_45431 DeepMRMD:1;iRNA_m5C:0.999536712157769 45432 chr15 73415016 73415016 1 + A G LAML 73415033 + 73415013 73415053 41 TCAAACTTCCAAGTGGAATGCTGGTTATCAGCAATGCAACT TCAGACTTCCAAGTGGAATGCTGGTTATCAGCAATGCAACT < 41bp 1 0.35057604148497 1 0.1803038418293 experiment 1 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control NEO1 ENSG00000067141 CDS Human protein_coding chr15:73415033 chr15:73415016 nonsynonymous SNV 0.964 0 4 hm5C_associated_SNPs_46782 0 0 0 0 0 Ribosome 1 0.500231643921092 1 0.999536712157815 hm5C_site_45432 DeepMRMD:1;iRNA_m5C:0.999536712157815 45433 chr15 69718696 69718696 1 + C T LAML 69718677 + 69718657 69718697 41 ATTTCTCTGTTGTCCTAGGCCAGAAAAAGAGACGTATTGCT ATTTCTCTGTTGTCCTAGGCCAGAAAAAGAGACGTATTGTT < 41bp 1 0.563264403059581 1 0.556152164936066 experiment 0.873471193880839 Functional Loss 28418038;GSE74774;RNA-BisSeq;MRC-5;Control KIF23 ENSG00000137807 CDS Human protein_coding chr15:69718677 chr15:69718696 nonsynonymous SNV 0.998 4 40 hm5C_associated_SNPs_46784 0 0 1 0 1 Nucleus 1 0.500231646350397 0.887695670127868 0.999536707299205 hm5C_site_45433 DeepMRMD:0.887695670127868;iRNA_m5C:0.999536707299205 45434 chr7 69064846 69064846 1 + G A LAML 69064849 + 69064829 69064869 41 TCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCG TCCTCCGCCCCGTCCCGACCCAGACCCCCGCGGAGGAAGCG < 41bp 1 0.208311004924665 1 0.0663153827190399 experiment 1 Functional Loss 28418038;GSE74771;RNA-BisSeq;293T;Control AUTS2 ENSG00000158321 CDS Human protein_coding chr7:69064849 chr7:69064846 synonymous SNV . 0 18 hm5C_associated_SNPs_46785 0 0 0 0 0 Nucleus 1 0.500231643895544 1 0.999536712208912 hm5C_site_45434 DeepMRMD:1;iRNA_m5C:0.999536712208912 45435 chr20 21312450 21312450 1 + G T LAML 21312451 + 21312431 21312471 41 TCATCATTGTTTATGTGGAGCAGATGGTAAGTTTCTTCTTT TCATCATTGTTTATGTGGATCAGATGGTAAGTTTCTTCTTT < 41bp 1 0.298114852853941 1 0.16995033621788 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control XRN2 ENSG00000088930 CDS Human protein_coding chr20:21312451 chr20:21312450 nonsynonymous SNV 1.000 3 20 hm5C_associated_SNPs_46786 0 0 1 0 2 Cytosol 1 0.500231643921097 1 0.999536712157807 hm5C_site_45435 DeepMRMD:1;iRNA_m5C:0.999536712157807 45436 chr7 56136249 56136249 1 + A G LAML 56136260 + 56136240 56136280 41 CCAGACAGCAGAGATGGTGACGGGCCTGTGCGGGAGGCGAC CCAGACAGCGGAGATGGTGACGGGCCTGTGCGGGAGGCGAC < 41bp 1 0.662198921980458 1 0.671773910522461 experiment 0.675602156039083 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control SUMF2 ENSG00000129103 CDS Human protein_coding chr7:56136260 chr7:56136249 nonsynonymous SNV 1.000 2 10 hm5C_associated_SNPs_46787 0 0 1 0 2 Ribosome 1 0.496455659467086 0.656452178955078 1 hm5C_site_45436 DeepMRMD:0.656452178955078;iRNA_m5C:1 45437 chr20 33589984 33589984 1 + A G LAML 33589995 + 33589975 33590015 41 CTCAGCACAAGGAGTGACGGCCTGACCCCCTGGGCTCTAAA CTCAGCACAGGGAGTGACGGCCTGACCCCCTGGGCTCTAAA < 41bp 1 0.137133698260521 1 0.285622328519821 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control MYH7B ENSG00000078814 CDS Human protein_coding chr20:33589995 chr20:33589984 nonsynonymous SNV 0.961 1 10 hm5C_associated_SNPs_46788 0 0 0 0 1 chromatin 1 0.500231643921094 1 0.999536712157812 hm5C_site_45437 DeepMRMD:1;iRNA_m5C:0.999536712157812 45438 chr11 48142753 48142753 1 + T C LAML 48142738 + 48142718 48142758 41 CATCACAGGCTTACGTCCAGCGACTTCATATGTATTCTCCA CATCACAGGCTTACGTCCAGCGACTTCATATGTATCCTCCA < 41bp 1 0.197011154068072 1 0.0562607049942017 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient|28418038;GSE93752;RNA-BisSeq;HeLa;Control PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48142738 chr11:48142753 nonsynonymous SNV 0.001 0 36 hm5C_associated_SNPs_46789 0 0 0 0 1 Endoplasmic reticulum 1 0.500231472291307 1 0.999537055417386 hm5C_site_45438 DeepMRMD:1;iRNA_m5C:0.999537055417386 45439 chr18 33785204 33785204 1 + C T LAML 33785184 + 33785164 33785204 41 CAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTGC CAGCCCTGAGGTTCAGGGCCCAATCATCAATTTTAATGTGT < 41bp 1 0.0316105530815744 1 0.0229431688785553 experiment 1 Functional Loss 22344696;NO;bisulfite sequencing;HeLa;Control MOCOS ENSG00000075643 CDS Human protein_coding chr18:33785184 chr18:33785204 synonymous SNV . 0 41 hm5C_associated_SNPs_46790 0 0 1 0 1 Ribosome 1 0.500231643921724 1 0.999536712156553 hm5C_site_45439 DeepMRMD:1;iRNA_m5C:0.999536712156553 45440 chr2 74273983 74273983 1 + C T LAML 74273996 + 74273976 74274016 41 GTGAGGCCGGCCTCCCAGCACCAAGCACCAGGCCACTCCTC GTGAGGCTGGCCTCCCAGCACCAAGCACCAGGCCACTCCTC < 41bp 1 0.268837294240564 1 0.369471907615662 experiment 1 Functional Loss 28418038;GSE74773;RNA-BisSeq;Huh7;Control TET3 ENSG00000187605 CDS Human protein_coding chr2:74273996 chr2:74273983 synonymous SNV . 0 8 hm5C_associated_SNPs_46791 0 0 0 0 0 Cytosol 1 0.500231643921092 1 0.999536712157815 hm5C_site_45440 DeepMRMD:1;iRNA_m5C:0.999536712157815 45441 chr6 43188281 43188281 1 + C T LAML 43188295 + 43188275 43188315 41 CCCGCCCAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC CCCGCCTAGCCCACCGGAGCCTTCATTCGTGCCATCGTCTC < 41bp 1 0.487275974061702 1 0.350506842136383 experiment 1 Functional Loss 28418038;GSE74772;RNA-BisSeq;HCT116;Control CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188295 chr6:43188281 stopgain 0.946 1 7 hm5C_associated_SNPs_46792 0 0 0 0 2 chromatin 1 0.500231641997024 1 0.999536716005953 hm5C_site_45441 DeepMRMD:1;iRNA_m5C:0.999536716005953 45442 chr8 25167988 25167988 1 + T A LAML 25168004 + 25167984 25168024 41 ACACTTGGTTGATAGATCAACAGCAATAGCCCGGAAGATGG ACACATGGTTGATAGATCAACAGCAATAGCCCGGAAGATGG < 41bp 1 0.599321410862293 1 0.35824254155159 experiment 0.801357178275415 Functional Loss 28418038;GSE74775;RNA-BisSeq;SNB19;Control DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25168004 chr8:25167988 nonsynonymous SNV 0.996 3 5 hm5C_associated_SNPs_46793 0 0 1 0 1 Nucleus 1 0.500231643921094 1 0.999536712157811 hm5C_site_45442 DeepMRMD:1;iRNA_m5C:0.999536712157811 45443 chr1 16257992 16257992 1 + C T LAML 16257979 + 16257959 16257999 41 TTTTCCCAGGCAGAGAGCAACGTAGATCCAGAGCCTGACAG TTTTCCCAGGCAGAGAGCAACGTAGATCCAGAGTCTGACAG < 41bp 1 0.230160739868739 1 0.0624575316905975 experiment 1 Functional Loss 28418038;GSE93751;RNA-BisSeq;HeLa;NSUN2 deficient SPEN ENSG00000065526 CDS Human protein_coding chr1:16257979 chr1:16257992 nonsynonymous SNV 0.008 3 34 hm5C_associated_SNPs_46794 0 0 1 0 0 Endoplasmic reticulum 1 0.500231643925863 1 0.999536712148274 hm5C_site_45443 DeepMRMD:1;iRNA_m5C:0.999536712148274 45444 chr2 219294189 219294189 1 + A C rs141545095 219294185 + 219294165 219294205 41 ACACGGTGGTGGAGCCGGCACTCAAGGCTGCACTCAAACTG ACACGGTGGTGGAGCCGGCACTCACGGCTGCACTCAAACTG < 41bp 0.868624387701023 0.500163775426623 0.22476 0.11894676 prediction 0.736921224548799 Functional Loss - VIL1 ENSG00000127831;ENSG00000127831 exonic;splicing Human other chr2:219294185 chr2:219294189 nonsynonymous SNV 0.896 1 25 hm5C_associated_SNPs_50092 0 0 1 0 1 Nucleus 0.500231643920852 0.500232332074743 0 0 hm5C_site_45444 DeepMRMD:0;iRNA_m5C:0 45445 chr22 44585099 44585099 1 + A C HNSC 44585095 + 44585075 44585115 41 TGGAGGCCGTGAACCGGAGTCTGCAGCTGGAGGAGTGGCAG TGGAGGCCGTGAACCGGAGTCTGCCGCTGGAGGAGTGGCAG < 41bp 0.863101429415478 0.497185646491364 0.68490005 0.22616792 prediction 0.726202858830955 Functional Loss - PARVG ENSG00000138964 CDS Human protein_coding chr22:44585095 chr22:44585099 nonsynonymous SNV 0.176 2 25 hm5C_associated_SNPs_50093 0 0 0 0 0 exosome 0.500256458847385 0.500231939253219 0.3698001 4.90391883332109e-05 hm5C_site_45445 DeepMRMD:0.3698001;iRNA_m5C:4.90391883332109e-05 45446 chr20 53205259 53205259 1 + A C LUSC 53205255 + 53205235 53205275 41 CTGATGAGTGGTGCAAAGTACTCCAGATGGAGTGTGTAGGA CTGATGAGTGGTGCAAAGTACTCCCGATGGAGTGTGTAGGA < 41bp 0.862824212051974 0.488312336215187 0.7216017 0.084116995 prediction 0.725648424103949 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53205255 chr20:53205259 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_50094 0 0 0 0 2 exosome 0.500233858125743 0.500231668733062 0.4432034 4.37878536119207e-06 hm5C_site_45446 DeepMRMD:0.4432034;iRNA_m5C:4.37878536119207e-06 45447 chr11 82877507 82877507 1 + A C rs143961720 82877503 + 82877483 82877523 41 CACCTAAAGCTGGAAAGATTCGCCAATCTGGAGCTAAGCAG CACCTAAAGCTGGAAAGATTCGCCCATCTGGAGCTAAGCAG < 41bp 0.861465405418242 0.495701139320473 0.5290242 0.08890998 prediction 0.722930810836484 Functional Loss - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82877503 chr11:82877507 nonsynonymous SNV 0.955 0 25 hm5C_associated_SNPs_50095 0 0 1 0 0 Nucleus 0.500231637702703 0.500231646676653 0.0580484000000001 0 hm5C_site_45447 DeepMRMD:0.0580484000000001;iRNA_m5C:0 45448 chr9 34506802 34506802 1 + A C STAD 34506798 + 34506778 34506818 41 GCAACGTGGCCATTTACAACCTCAAGAAGCCCCACTCCCAG GCAACGTGGCCATTTACAACCTCACGAAGCCCCACTCCCAG < 41bp 0.875701659258484 0.515268678212781 0.096346766 0.028285861 prediction 0.720865962091405 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34506798 chr9:34506802 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_50096 0 0 0 0 1 unknown 0.500231643923016 0.500231643945259 0 0 hm5C_site_45448 DeepMRMD:0;iRNA_m5C:0 45449 chr12 109278837 109278837 1 + A C SKCM 109278833 + 109278813 109278853 41 ATCGGGCTGTCCACCGCCCTCTGCATCCATGAGCGCTACCA ATCGGGCTGTCCACCGCCCTCTGCCTCCATGAGCGCTACCA < 41bp 0.859736697356487 0.487078640761131 0.27105343 0.019925296 prediction 0.719473394712974 Functional Loss - DAO ENSG00000110887 CDS Human protein_coding chr12:109278833 chr12:109278837 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_50097 0 0 0 0 0 Endoplasmic reticulum 0.500231643920985 0.500231643400408 0 1.04115427390639e-09 hm5C_site_45449 DeepMRMD:0;iRNA_m5C:1.04115427390639e-09 45450 chr1 47284452 47284452 1 + A C BRCA 47284448 + 47284428 47284468 41 GCTCCAAGAATGGCTTTCACCTCCACCTGAAGCCACTGGGC GCTCCAAGAATGGCTTTCACCTCCCCCTGAAGCCACTGGGC < 41bp 0.860869279208083 0.503043782453287 0.92938054 0.28157294 prediction 0.715650993509593 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47284448 chr1:47284452 nonsynonymous SNV 0.716 1 25 hm5C_associated_SNPs_50098 0 0 0 0 0 exosome 0.500231669641112 0.500231643671269 0.85876108 5.1939686107616e-08 hm5C_site_45450 DeepMRMD:0.85876108;iRNA_m5C:5.1939686107616e-08 45451 chr19 50435872 50435872 1 + A C LUAD 50435868 + 50435848 50435888 41 CCTAGATGCCCCGCCCCTCCCACCACCCTCCCCGCCGCCAC CCTAGATGCCCCGCCCCTCCCACCCCCCTCCCCGCCGCCAC < 41bp 0.871680042822925 0.51405758631643 0.10314578 0.060653567 prediction 0.715244913012991 Functional Loss - ATF5 ENSG00000169136 CDS Human protein_coding chr19:50435868 chr19:50435872 synonymous SNV . 0 25 hm5C_associated_SNPs_50099 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643922604 0 0 hm5C_site_45451 DeepMRMD:0;iRNA_m5C:0 45452 chr15 42113178 42113178 1 + A C LUSC 42113174 + 42113154 42113194 41 TGGAAACACTGGCCCCAAGCCTGCAGGACCCTAGCCAGGAC TGGAAACACTGGCCCCAAGCCTGCCGGACCCTAGCCAGGAC < 41bp 0.857392039193671 0.479073861872815 0.26940972 0.36637482 prediction 0.714784078387343 Functional Loss - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42113174 chr15:42113178 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_50100 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_45452 DeepMRMD:0;iRNA_m5C:0 45453 chr12 57865355 57865355 1 + A C SKCM 57865351 + 57865331 57865371 41 TAGCCCAAGCCGTGCTAAAGCTCCAGTGAACACATATGGAC TAGCCCAAGCCGTGCTAAAGCTCCCGTGAACACATATGGAC < 41bp 0.85617954297025 0.481196872531403 0.46637872 0.11949113 prediction 0.7123590859405 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57865351 chr12:57865355 synonymous SNV . 0 25 hm5C_associated_SNPs_50101 0 0 0 0 0 nucleoplasm 0.500231643601161 0.500231625433316 0 3.63356909005574e-08 hm5C_site_45453 DeepMRMD:0;iRNA_m5C:3.63356909005574e-08 45454 chrX 11316741 11316741 1 + A C rs749213434 11316737 + 11316717 11316757 41 TCATCCCCGTGCTGTCCCAACAGCACCCCCCGACTCACACC TCATCCCCGTGCTGTCCCAACAGCCCCCCCCGACTCACACC < 41bp 0.856120238464735 0.497158504097521 0.06795579 0.046703905 prediction 0.71224047692947 Functional Loss - AMELX ENSG00000125363 CDS Human protein_coding chrX:11316737 chrX:11316741 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_50102 0 0 0 0 1 unknown 0.500231643921092 0.500231643920976 0 2.32924790566358e-13 hm5C_site_45454 DeepMRMD:0;iRNA_m5C:2.32924790566358e-13 45455 chr11 64973961 64973961 1 + A C GBM 64973957 + 64973937 64973977 41 GTGGGCCAGCCGGCCGTACACTTGAAGCGTGACTTCTTCCT GTGGGCCAGCCGGCCGTACACTTGCAGCGTGACTTCTTCCT < 41bp 0.855842816503908 0.496099917836796 0.18140855 0.05020657 prediction 0.711685633007816 Functional Loss - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64973957 chr11:64973961 nonsynonymous SNV 0.785 2 25 hm5C_associated_SNPs_50103 0 0 1 0 1 Ribosome 0.500231643916595 0.500231644194137 0 0 hm5C_site_45455 DeepMRMD:0;iRNA_m5C:0 45456 chr19 47491306 47491306 1 + A C SKCM 47491302 + 47491282 47491322 41 ACAAGTCTGAGATGGAGAGTCTGCAGAGACAGTTTGATCAA ACAAGTCTGAGATGGAGAGTCTGCCGAGACAGTTTGATCAA < 41bp 0.85583983607926 0.479258186367007 0.56733614 0.35377848 prediction 0.711679672158519 Functional Loss - ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47491302 chr19:47491306 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_50104 0 0 1 0 2 Ribosome 0.500232793705815 0.500339133305475 0.13467228 0 hm5C_site_45456 DeepMRMD:0.13467228;iRNA_m5C:0 45457 chr5 131606661 131606661 1 + A C UCEC 131606657 + 131606637 131606677 41 CTCAGGCACCGGGACTGGGCCAGAAGATGGCAGACCAAGCC CTCAGGCACCGGGACTGGGCCAGACGATGGCAGACCAAGCC < 41bp 0.855834362646865 0.500218977941992 0.12203443 0.112220705 prediction 0.711230769409747 Functional Loss - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131606657 chr5:131606661 nonsynonymous SNV 0.605 0 25 hm5C_associated_SNPs_50105 0 0 0 0 1 chromatin 0.500231643921092 0.500231643933743 0 0 hm5C_site_45457 DeepMRMD:0;iRNA_m5C:0 45458 chrX 146993477 146993477 1 + T G rs781868385 146993481 - 146993461 146993501 41 CCGCCCGCTCAGAGGCGGCCCTCCACCGGAAGTGAAACCGA CCGCCCGCTCAGAGGCGGCCCTCCCCCGGAAGTGAAACCGA < 41bp 0.862185493919294 0.506614394759692 0.95442617 0.11221978 prediction 0.711142198319204 Functional Loss - FMR1 ENSG00000102081 UTR5 Human protein_coding chrX:146993481 chrX:146993477 . . 0 25 hm5C_associated_SNPs_50106 0 0 0 0 0 Cytosol 0.500231643931653 0.500231643921091 0.90885234 2.11228812219133e-11 hm5C_site_45458 DeepMRMD:0.90885234;iRNA_m5C:2.11228812219133e-11 45459 chr17 48753029 48753029 1 + G T LUAD 48753026 + 48753006 48753046 41 TGTCCTCAGATGGGGAGGGACAGGGTCGGCCTGTACCCCGG TGTCCTCAGATGGGGAGGGACAGTGTCGGCCTGTACCCCGG < 41bp 0.855388937336333 0.497730917965042 0.9278975 0.20596662 prediction 0.710777874672665 Functional Loss - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48753026 chr17:48753029 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_50107 0 0 1 0 1 Endoplasmic reticulum 0.500231643921093 0.50023164393092 0.855795 0 hm5C_site_45459 DeepMRMD:0.855795;iRNA_m5C:0 45460 chr9 97218576 97218576 1 + A C rs138907021 97218572 + 97218552 97218592 41 CATGTCCAGCATCACGTTTCCGGCAATCAGTGCCCTCGTCT CATGTCCAGCATCACGTTTCCGGCCATCAGTGCCCTCGTCT < 41bp 0.854394673095109 0.490263198796959 0.79647124 0.54195446 prediction 0.708789346190218 Functional Loss - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97218572 chr9:97218576 synonymous SNV . 0 25 hm5C_associated_SNPs_50108 0 0 1 0 2 Ribosome 0.500231666986238 0.500231638775801 0.50903356 5.64208753051076e-08 hm5C_site_45460 DeepMRMD:0.50903356;iRNA_m5C:5.64208753051076e-08 45461 chr4 71347001 71347001 1 + A C BRCA 71346997 + 71346977 71347017 41 TTCTGCAACTACACCAGCTCCACCATCTTCCTCAGCTCCAC TTCTGCAACTACACCAGCTCCACCCTCTTCCTCAGCTCCAC < 41bp 0.854324994165272 0.487136880124779 0.09505269 0.077518344 prediction 0.708649988330544 Functional Loss - MUC7 ENSG00000171195 CDS Human protein_coding chr4:71346997 chr4:71347001 synonymous SNV . 0 25 hm5C_associated_SNPs_50109 0 0 0 0 0 unknown 0.500231637021115 0.500231643921125 0 0 hm5C_site_45461 DeepMRMD:0;iRNA_m5C:0 45462 chr2 27666892 27666892 1 + A C COAD 27666888 + 27666868 27666908 41 AGCAGCTACTGGATCAAAATCAAGAAATCCGGGCATCACAG AGCAGCTACTGGATCAAAATCAAGCAATCCGGGCATCACAG < 41bp 0.854177069496918 0.493821895719654 0.8786644 0.8710553 prediction 0.708354138993837 Functional Loss - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27666888 chr2:27666892 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_50110 0 0 0 0 2 Endoplasmic reticulum 0.500231643921933 0.500231644845878 0.0152182000000001 0 hm5C_site_45462 DeepMRMD:0.0152182000000001;iRNA_m5C:0 45463 chr14 29237293 29237293 1 + A C STAD 29237289 + 29237269 29237309 41 GACGACGTGTTCATCGGCGGCACCACGGGCAAGCTGCGGCG GACGACGTGTTCATCGGCGGCACCCCGGGCAAGCTGCGGCG < 41bp 0.853388896633891 0.496719697113022 0.4117942 0.3243264 prediction 0.706777793267782 Functional Loss - FOXG1 ENSG00000176165 CDS Human protein_coding chr14:29237289 chr14:29237293 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_50111 0 0 0 0 0 Cytosol 0.500233210889188 0.500231638807319 0 3.14416373781157e-06 hm5C_site_45463 DeepMRMD:0;iRNA_m5C:3.14416373781157e-06 45464 chr2 232458731 232458731 1 + A C SKCM 232458727 + 232458707 232458747 41 GGGACCAGCTCAGCCCTGCGCACCATCACCCGTGTGCTGGA GGGACCAGCTCAGCCCTGCGCACCCTCACCCGTGTGCTGGA < 41bp 0.858823292648577 0.505443466838714 0.14891246 0.17731893 prediction 0.706759651619727 Functional Loss - TEX44 ENSG00000177673 CDS Human protein_coding chr2:232458727 chr2:232458731 nonsynonymous SNV 0.019 0 25 hm5C_associated_SNPs_50112 0 0 0 0 0 unknown 0.500231643921094 0.500231643920311 0 1.5665246877461e-12 hm5C_site_45464 DeepMRMD:0;iRNA_m5C:1.5665246877461e-12 45465 chr11 60561516 60561516 1 + G T LUSC 60561513 + 60561493 60561533 41 TCTGGCCTCTTCGTCATCTCCAAGGATCTCTTTCTGGAGAG TCTGGCCTCTTCGTCATCTCCAATGATCTCTTTCTGGAGAG < 41bp 0.853374903562286 0.497629760438193 0.39756188 0.02401954 prediction 0.706749807124571 Functional Loss - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60561513 chr11:60561516 nonsynonymous SNV 0.960 2 24 hm5C_associated_SNPs_50113 0 0 0 0 2 Nucleus 0.500231643920939 0.500231639894666 0 8.05254685154466e-09 hm5C_site_45465 DeepMRMD:0;iRNA_m5C:8.05254685154466e-09 45466 chr17 63221166 63221166 1 + G T SKCM 63221163 + 63221143 63221183 41 CCCCCATCTGACCGTGTACACCGGGACCTGCATGCCCCCGT CCCCCATCTGACCGTGTACACCGTGACCTGCATGCCCCCGT < 41bp 0.856628948386363 0.503326010164378 0.9119747 0.23852083 prediction 0.706605876443971 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63221163 chr17:63221166 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_50114 0 0 0 0 1 exosome 0.500231640994776 0.500231650815397 0.8239494 0 hm5C_site_45466 DeepMRMD:0.8239494;iRNA_m5C:0 45467 chr1 160182974 160182974 1 + A C ACC 160182970 + 160182950 160182990 41 CTACTCACTATGGTGGTTGACTACAGAACCCGTGTGCTGAA CTACTCACTATGGTGGTTGACTACCGAACCCGTGTGCTGAA < 41bp 0.853285282546537 0.476315024173663 0.90770733 0.053411007 prediction 0.706570565093074 Functional Loss - PEA15 ENSG00000162734 CDS Human protein_coding chr1:160182970 chr1:160182974 synonymous SNV . 0 25 hm5C_associated_SNPs_50115 0 0 1 0 2 Ribosome 0.500231063104872 0.50023126450193 0.81541466 0 hm5C_site_45467 DeepMRMD:0.81541466;iRNA_m5C:0 45468 chr14 59113045 59113045 1 + G T UCEC 59113042 + 59113022 59113062 41 CCGGGGCAGCAGCCCAGTGTCAGGCTCCACCGGGGCCACAG CCGGGGCAGCAGCCCAGTGTCAGTCTCCACCGGGGCCACAG < 41bp 0.855909276858812 0.502692592845442 0.85774034 0.044187903 prediction 0.706433368026739 Functional Loss - DACT1 ENSG00000165617 CDS Human protein_coding chr14:59113042 chr14:59113045 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_50116 0 0 0 0 0 exosome 0.500231643921094 0.500231643922451 0.71548068 0 hm5C_site_45468 DeepMRMD:0.71548068;iRNA_m5C:0 45469 chr12 5021420 5021420 1 + G T LUSC 5021417 + 5021397 5021437 41 GCCACCTCCCTGGCCATCCTCAGGGTCATCCGCTTGGTAAG GCCACCTCCCTGGCCATCCTCAGTGTCATCCGCTTGGTAAG < 41bp 0.853128181658127 0.498050860026736 0.951255 0.3450716 prediction 0.706256363316254 Functional Loss - KCNA1 ENSG00000111262 CDS Human protein_coding chr12:5021417 chr12:5021420 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_50117 0 0 0 0 0 unknown 0.500231643921092 0.500231643932196 0.90251 0 hm5C_site_45469 DeepMRMD:0.90251;iRNA_m5C:0 45470 chr7 120969820 120969820 1 + A C rs115876139 120969816 + 120969796 120969836 41 AACTGCATGATCACCGCCGCCGCCACTACCGCCCCGATGGG AACTGCATGATCACCGCCGCCGCCCCTACCGCCCCGATGGG < 41bp 0.877356499868396 0.524454553841161 0.7171085 0.35281843 prediction 0.70580389205447 Functional Loss - WNT16 ENSG00000002745 CDS Human protein_coding chr7:120969816 chr7:120969820 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_50118 0 0 0 0 1 exosome 0.500211617468262 0.500231779291442 0.434217 0 hm5C_site_45470 DeepMRMD:0.434217;iRNA_m5C:0 45471 chr15 74467463 74467463 1 + G T UCEC 74467460 + 74467440 74467480 41 CTGGCACACAATGAGATCCGCACGGTGGCCGCCGGAGCCCT CTGGCACACAATGAGATCCGCACTGTGGCCGCCGGAGCCCT < 41bp 0.854397586626516 0.501535640290837 0.28849202 0.122811764 prediction 0.705723892671359 Functional Loss - ISLR ENSG00000129009 CDS Human protein_coding chr15:74467460 chr15:74467463 synonymous SNV . 0 24 hm5C_associated_SNPs_50119 0 0 0 0 0 Cytosol 0.500231632784592 0.500231643917279 0 0 hm5C_site_45471 DeepMRMD:0;iRNA_m5C:0 45472 chrX 70514336 70514336 1 + A C UCS 70514332 + 70514312 70514352 41 TCTCAGGGAAGCCAGCTGCTCGGAAAGCTCTGGACAGATGC TCTCAGGGAAGCCAGCTGCTCGGACAGCTCTGGACAGATGC < 41bp 0.860095147479531 0.507246827676536 0.74554354 0.71718043 prediction 0.70569663960599 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70514332 chrX:70514336 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_50120 0 0 1 0 1 Nucleus 0.500231644428237 0.500231646350147 0.05672622 0 hm5C_site_45472 DeepMRMD:0.05672622;iRNA_m5C:0 45473 chr13 46287712 46287712 1 + G T LUSC 46287709 + 46287689 46287729 41 GAGGAGAACAAGGCCCTGCGCGAGGAGAACCGGATGCTCAG GAGGAGAACAAGGCCCTGCGCGATGAGAACCGGATGCTCAG < 41bp 0.852677328281857 0.495374543013434 0.9066551 0.37151438 prediction 0.705354656563714 Functional Loss - SPERT ENSG00000174015 CDS Human protein_coding chr13:46287709 chr13:46287712 nonsynonymous SNV 0.749 0 24 hm5C_associated_SNPs_50121 0 0 0 0 0 exosome 0.500231643921268 0.500231643921093 0.8133102 3.512745649914e-13 hm5C_site_45473 DeepMRMD:0.8133102;iRNA_m5C:3.512745649914e-13 45474 chr4 71275511 71275511 1 + A C UCEC 71275507 + 71275487 71275527 41 ACCGCAGATACAACAATCACCACAAATCCCCCCACCACTGC ACCGCAGATACAACAATCACCACACATCCCCCCACCACTGC < 41bp 0.853137108845409 0.500482166560838 0.14637426 0.17339855 prediction 0.705309884569143 Functional Loss - OPRPN ENSG00000171199 CDS Human protein_coding chr4:71275507 chr4:71275511 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_50122 0 0 0 0 0 exosome 0.500231643914782 0.500231643792618 0 2.44327225118468e-10 hm5C_site_45474 DeepMRMD:0;iRNA_m5C:2.44327225118468e-10 45475 chrX 70602911 70602911 1 + A C LUSC 70602907 + 70602887 70602927 41 ACATGGGGCCCATCAAACTCCGGCAGTTCCATCGCCCACCT ACATGGGGCCCATCAAACTCCGGCCGTTCCATCGCCCACCT < 41bp 0.852438014737787 0.497286301192726 0.911861 0.89945793 prediction 0.704876029475574 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70602907 chrX:70602911 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_50123 0 0 1 0 1 Cytosol 0.500231645125826 0.500231636611374 0.0248061400000001 1.70289022882741e-08 hm5C_site_45475 DeepMRMD:0.0248061400000001;iRNA_m5C:1.70289022882741e-08 45476 chr12 57910051 57910051 1 + A C LIHC 57910047 + 57910027 57910067 41 GGCAAAAACGTCCCCGAAGCCAGCAGTTGTAGAGACTGTTA GGCAAAAACGTCCCCGAAGCCAGCCGTTGTAGAGACTGTTA < 41bp 0.85194202423364 0.499664359750093 0.50988615 0.2058866 prediction 0.703884048467281 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57910047 chr12:57910051 synonymous SNV . 0 25 hm5C_associated_SNPs_50124 0 0 1 3 2 Cytosol 0.500231643921083 0.500231643921092 0.0197723000000001 0 hm5C_site_45476 DeepMRMD:0.0197723000000001;iRNA_m5C:0 45477 chr9 990401 990401 1 + A C rs187176004 990397 + 990377 990417 41 CAACGGTGCTTGAGCTCATCCTCAAGGGCTGTGGCGGGGAC CAACGGTGCTTGAGCTCATCCTCACGGGCTGTGGCGGGGAC < 41bp 0.876893374293966 0.525030248782694 0.065434664 0.030771226 prediction 0.703726251022543 Functional Loss - DMRT3 ENSG00000064218 CDS Human protein_coding chr9:990397 chr9:990401 nonsynonymous SNV 0.984 4 25 hm5C_associated_SNPs_50125 0 0 1 0 0 unknown 0.500295881275509 0.500231643929484 0 0.000128474692049796 hm5C_site_45477 DeepMRMD:0;iRNA_m5C:0.000128474692049796 45478 chr17 48539903 48539903 1 + A C rs202105387 48539899 + 48539879 48539919 41 TGGACCAGCTCCAATACAACCAGCAGTTCCTGTCCTGCCAT TGGACCAGCTCCAATACAACCAGCCGTTCCTGTCCTGCCAT < 41bp 0.87408333167986 0.522462467940517 0.90767574 0.87209547 prediction 0.703241727478687 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48539899 chr17:48539903 nonsynonymous SNV 0.961 0 25 hm5C_associated_SNPs_50126 0 0 1 0 1 Endoplasmic reticulum 0.500231643921093 0.500231642907636 0.0711605399999999 2.0269141920437e-09 hm5C_site_45478 DeepMRMD:0.0711605399999999;iRNA_m5C:2.0269141920437e-09 45479 chr17 40706500 40706500 1 + A C STAD 40706496 + 40706476 40706516 41 TGGGCAGCCCAGAGGAGGTGCTGGACCGCACGGACATCCAC TGGGCAGCCCAGAGGAGGTGCTGGCCCGCACGGACATCCAC < 41bp 0.8516169230653 0.499555078498544 0.78882015 0.55862623 prediction 0.7032338461306 Functional Loss - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40706496 chr17:40706500 nonsynonymous SNV 0.008 1 25 hm5C_associated_SNPs_50127 0 0 0 0 1 chromatin 0.50023164392109 0.500231643986911 0.46038784 0 hm5C_site_45479 DeepMRMD:0.46038784;iRNA_m5C:0 45480 chr5 225597 225597 1 + A C UCEC 225593 + 225573 225613 41 AACTGGAGGTGGCATTTCTACGACACCGTGAAGGGCTCCGA AACTGGAGGTGGCATTTCTACGACCCCGTGAAGGGCTCCGA < 41bp 0.868889621913804 0.517407198029806 0.1883738 0.21741441 prediction 0.702964847767996 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:225593 chr5:225597 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_50128 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_45480 DeepMRMD:0;iRNA_m5C:0 45481 chr19 15053168 15053168 1 + A C BLCA 15053164 + 15053144 15053184 41 CCCATGCTGAACCCCTTCATCTACAGCCTGAGGAACAAGGA CCCATGCTGAACCCCTTCATCTACCGCCTGAGGAACAAGGA < 41bp 0.858094184217367 0.506624163380455 0.02388078 0.02218622 prediction 0.702940041673823 Functional Loss - OR7C2 ENSG00000127529 CDS Human protein_coding chr19:15053164 chr19:15053168 nonsynonymous SNV 0.334 3 25 hm5C_associated_SNPs_50129 0 0 0 0 0 exosome 0.500231715064928 0.500231643882933 0 1.4236399037415e-07 hm5C_site_45481 DeepMRMD:0;iRNA_m5C:1.4236399037415e-07 45482 chr19 36357241 36357241 1 + G T UCEC 36357238 + 36357218 36357258 41 CCCTGCAGACTTTACAGAGCCAGGGCAGGCTATCTCACCAC CCCTGCAGACTTTACAGAGCCAGTGCAGGCTATCTCACCAC < 41bp 0.851410231894155 0.498892070961978 0.576512 0.2294184 prediction 0.702820463788311 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357238 chr19:36357241 nonsynonymous SNV 0.765 0 24 hm5C_associated_SNPs_50130 0 0 0 0 0 exosome 0.500231643919898 0.50023194102466 0.153024 0 hm5C_site_45482 DeepMRMD:0.153024;iRNA_m5C:0 45483 chrX 67940905 67940905 1 + A C LUSC 67940901 + 67940881 67940921 41 ACCTGCTAAAGCAGTATTTCCGGGACCTGCCTGAGCCCATC ACCTGCTAAAGCAGTATTTCCGGGCCCTGCCTGAGCCCATC < 41bp 0.863680930894329 0.512364243240429 0.7655169 0.605498 prediction 0.7026333753078 Functional Loss - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67940901 chrX:67940905 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_50131 0 0 0 0 0 chromatin 0.500231643919338 0.500231643921092 0.3200378 0 hm5C_site_45483 DeepMRMD:0.3200378;iRNA_m5C:0 45484 chr16 2571123 2571123 1 + A C GBM 2571119 + 2571099 2571139 41 CTTCCCCACCGGAGGTTTATCACAAGGTGAGGTGAGGCTCC CTTCCCCACCGGAGGTTTATCACACGGTGAGGTGAGGCTCC < 41bp 0.856767147830467 0.505451527797189 0.6615617 0.3735469 prediction 0.702631240066557 Functional Loss - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2571119 chr16:2571123 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_50132 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.3231234 0 hm5C_site_45484 DeepMRMD:0.3231234;iRNA_m5C:0 45485 chr12 53776146 53776146 1 + A C UCEC 53776142 + 53776122 53776162 41 AGCAATGGCAGTGAGTCTTCCAAGAATCGCACAGTCTCTGG AGCAATGGCAGTGAGTCTTCCAAGCATCGCACAGTCTCTGG < 41bp 0.856686100846585 0.505711510436443 0.40285158 0.29676497 prediction 0.701949180820283 Functional Loss - SP1 ENSG00000185591 CDS Human protein_coding chr12:53776142 chr12:53776146 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_50133 0 0 1 0 0 Nucleus 0.500231653092848 0.500231643949225 0 1.82872452736405e-08 hm5C_site_45485 DeepMRMD:0;iRNA_m5C:1.82872452736405e-08 45486 chr11 20648296 20648296 1 + A C BLCA 20648292 + 20648272 20648312 41 ACGTTCCCGTATGTCGTACTCGTGATCCTCCTCATCCGAGG ACGTTCCCGTATGTCGTACTCGTGCTCCTCCTCATCCGAGG < 41bp 0.850933728379318 0.499411030694312 0.8574413 0.72860533 prediction 0.701867456758635 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20648292 chr11:20648296 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_50134 0 0 0 0 2 unknown 0.500231643923037 0.500231643920854 0.25767194 4.36561897743104e-12 hm5C_site_45486 DeepMRMD:0.25767194;iRNA_m5C:4.36561897743104e-12 45487 chr14 20924919 20924919 1 + A C rs535864709 20924915 + 20924895 20924935 41 AGCTGAACTTCAGGAGCTGCCTGGACTCTCTCATCAATACT AGCTGAACTTCAGGAGCTGCCTGGCCTCTCTCATCAATACT < 41bp 0.850928297566241 0.481126779499829 0.05496314 0.16836467 prediction 0.701856595132481 Functional Loss - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20924915 chr14:20924919 synonymous SNV . 0 25 hm5C_associated_SNPs_50135 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 1.33226762955019e-15 hm5C_site_45487 DeepMRMD:0;iRNA_m5C:1.33226762955019e-15 45488 chr16 74336160 74336160 1 + A C GBM 74336156 + 74336136 74336176 41 GAAGGACCTAGGGCTGCCTACAGAAGCGTACATTTCAGTGG GAAGGACCTAGGGCTGCCTACAGACGCGTACATTTCAGTGG < 41bp 0.860795744861685 0.509960196486515 0.7815135 0.55114853 prediction 0.701671096750339 Functional Loss - PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74336156 chr16:74336160 nonsynonymous SNV 0.974 1 25 hm5C_associated_SNPs_50136 0 0 1 0 2 Ribosome 0.500231643921092 0.500231644075868 0.46072994 0 hm5C_site_45488 DeepMRMD:0.46072994;iRNA_m5C:0 45489 chr20 31811713 31811713 1 + G T UCEC 31811710 + 31811690 31811730 41 TGCCTCAGCACAAGTGGCCCCAGGGCTGGTGGGCTGGCTAA TGCCTCAGCACAAGTGGCCCCAGTGCTGGTGGGCTGGCTAA < 41bp 0.852543345836973 0.501740681336046 0.85338306 0.2871378 prediction 0.701605329001854 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31811710 chr20:31811713 nonsynonymous SNV 0.838 4 24 hm5C_associated_SNPs_50137 0 0 0 0 2 unknown 0.500231643921028 0.500231643921092 0.70676612 0 hm5C_site_45489 DeepMRMD:0.70676612;iRNA_m5C:0 45490 chr11 32608583 32608583 1 + A C UCEC 32608579 + 32608559 32608599 41 CTGCTGAGCTTCGTGCTTATCTGAAATCTAAAGGAGCTGAG CTGCTGAGCTTCGTGCTTATCTGACATCTAAAGGAGCTGAG < 41bp 0.853408500374899 0.50277107795973 0.22628078 0.17607749 prediction 0.701274844830339 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32608579 chr11:32608583 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50138 0 0 1 0 1 Cytosol 0.500231519707316 0.500231719897168 0 0 hm5C_site_45490 DeepMRMD:0;iRNA_m5C:0 45491 chr2 26676352 26676352 1 + G T LUAD 26676349 + 26676329 26676369 41 GAGGAGACCCCACCCTCCCCCTGGGTCATCCACCCCAATGA GAGGAGACCCCACCCTCCCCCTGTGTCATCCACCCCAATGA < 41bp 0.857531132791895 0.5071197880694 0.725158 0.08032 prediction 0.700822689444991 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26676349 chr2:26676352 nonsynonymous SNV 0.061 0 24 hm5C_associated_SNPs_50139 0 0 0 0 1 exosome 0.500231643921092 0.500231644230126 0.450316 0 hm5C_site_45491 DeepMRMD:0.450316;iRNA_m5C:0 45492 chr3 88202563 88202563 1 + A C UCEC 88202559 + 88202539 88202579 41 ACTGGCAAAAGCAACCACAACTGAAATTGAAGGAAACGCCA ACTGGCAAAAGCAACCACAACTGACATTGAAGGAAACGCCA < 41bp 0.850404398281901 0.47966284406188 0.3550615 0.13842449 prediction 0.700808796563803 Functional Loss - C3orf38 ENSG00000179021 CDS Human protein_coding chr3:88202559 chr3:88202563 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_50140 0 0 1 0 1 exosome 0.500231643921094 0.500233686313021 0 0 hm5C_site_45492 DeepMRMD:0;iRNA_m5C:0 45493 chr3 183824002 183824002 1 + A C OV 183823998 + 183823978 183824018 41 ACCCACCTGCTGCACGTGGCCACCACCCAGCCCCCACCCCT ACCCACCTGCTGCACGTGGCCACCCCCCAGCCCCCACCCCT < 41bp 0.870238620380509 0.519994523124219 0.017813295 0.03320554 prediction 0.700488194512581 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823998 chr3:183824002 nonsynonymous SNV 0.651 3 25 hm5C_associated_SNPs_50141 0 0 0 0 1 unknown 0.500231644187249 0.500231643992165 0 3.90167897990068e-10 hm5C_site_45493 DeepMRMD:0;iRNA_m5C:3.90167897990068e-10 45494 chr8 142441122 142441122 1 + A C UCEC 142441118 + 142441098 142441138 41 GGTTCAAAGACCCACACACGCACAAGACCCGGTGCTGCGTT GGTTCAAAGACCCACACACGCACACGACCCGGTGCTGCGTT < 41bp 0.859846889181997 0.509696380584595 0.21061182 0.08424088 prediction 0.700301017194803 Functional Loss - PTP4A3 ENSG00000184489 CDS Human protein_coding chr8:142441118 chr8:142441122 nonsynonymous SNV 0.914 2 25 hm5C_associated_SNPs_50142 0 0 0 0 1 Cytosol 0.500231646011483 0.500231560736485 0 1.70549996125757e-07 hm5C_site_45494 DeepMRMD:0;iRNA_m5C:1.70549996125757e-07 45495 chr17 76060954 76060954 1 + A C rs61730171 76060950 + 76060930 76060970 41 CAGCGGGTGGGGAGATCACCCTGCAGAGCCGCCGGTGGCAT CAGCGGGTGGGGAGATCACCCTGCCGAGCCGCCGGTGGCAT < 41bp 0.850047398784019 0.474471394701667 0.4991662 0.6217124 prediction 0.700094797568039 Functional Loss - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76060950 chr17:76060954 synonymous SNV . 0 25 hm5C_associated_SNPs_50143 0 0 1 0 1 chromatin 0.500231643920797 0.50023164391161 0 1.83730808345217e-11 hm5C_site_45495 DeepMRMD:0;iRNA_m5C:1.83730808345217e-11 45496 chr2 131520185 131520185 1 + G T LUAD 131520182 + 131520162 131520202 41 GACTTGGCCTCGCTGGCGGCCGAGGGGAAAAGCCTGCCCTC GACTTGGCCTCGCTGGCGGCCGATGGGAAAAGCCTGCCCTC < 41bp 0.856136460084143 0.506091114319414 0.927701 0.8719623 prediction 0.700090691529458 Functional Loss - AMER3 ENSG00000178171 CDS Human protein_coding chr2:131520182 chr2:131520185 nonsynonymous SNV 0.015 0 24 hm5C_associated_SNPs_50144 0 0 0 0 0 Nucleus 0.500231644135922 0.500231658067488 0.1114774 0 hm5C_site_45496 DeepMRMD:0.1114774;iRNA_m5C:0 45497 chr5 148702174 148702174 1 + G T UCEC 148702171 + 148702151 148702191 41 TCCTCCATCTCCCACCAGGACGAGGAGCCCGAGCGCCCCAC TCCTCCATCTCCCACCAGGACGATGAGCCCGAGCGCCCCAC < 41bp 0.84999407938848 0.494572600856205 0.8333844 0.3339394 prediction 0.699988158776961 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148702171 chr5:148702174 nonsynonymous SNV 0.409 1 24 hm5C_associated_SNPs_50145 0 0 0 0 1 exosome 0.500231643921063 0.500231643846568 0.6667688 1.48989931503252e-10 hm5C_site_45497 DeepMRMD:0.6667688;iRNA_m5C:1.48989931503252e-10 45498 chr3 45714197 45714197 1 + G T BLCA 45714194 + 45714174 45714214 41 TGCTCCAGATCCTGCAAGCCCTGGGGAAGTCCTACCACCCC TGCTCCAGATCCTGCAAGCCCTGTGGAAGTCCTACCACCCC < 41bp 0.855598086714895 0.505637089164304 0.8989835 0.7192729 prediction 0.699921995101182 Functional Loss - LIMD1 ENSG00000144791 CDS Human protein_coding chr3:45714194 chr3:45714197 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_50146 0 0 1 0 1 Ribosome 0.500231643921092 0.500231644065715 0.3594212 0 hm5C_site_45498 DeepMRMD:0.3594212;iRNA_m5C:0 45499 chr12 113629440 113629440 1 + A C rs141982884 113629436 + 113629416 113629456 41 CTCACCCACCTGAATGTCCCCAGCACTGGTCATCCAGCCAC CTCACCCACCTGAATGTCCCCAGCCCTGGTCATCCAGCCAC < 41bp 0.851598716530108 0.501670411690876 0.060611308 0.037977934 prediction 0.699856609678463 Functional Loss - RITA1 ENSG00000139405 CDS Human protein_coding chr12:113629436 chr12:113629440 nonsynonymous SNV 0.904 0 25 hm5C_associated_SNPs_50147 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_45499 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 45500 chr22 35785917 35785917 1 + G T THYM 35785914 + 35785894 35785934 41 CCAAGGACCAGAGCCCCTCACGGGCACCAGGGCTTCGCCAG CCAAGGACCAGAGCCCCTCACGGTCACCAGGGCTTCGCCAG < 41bp 0.858092593359555 0.508246627660115 0.90710104 0.754697 prediction 0.699691931398881 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35785914 chr22:35785917 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_50148 0 0 1 0 2 exosome 0.500231643921092 0.500231643921092 0.30480808 0 hm5C_site_45500 DeepMRMD:0.30480808;iRNA_m5C:0 45501 chr12 50232398 50232398 1 + T G STAD 50232402 - 50232382 50232422 41 GGGCAGCTGCAAGGCGTCTCCGAAAGCTGGGACTCCATGAT GGGCAGCTGCAAGGCGTCTCCGAACGCTGGGACTCCATGAT < 41bp 0.853181116230668 0.503367712185768 0.77420175 0.5368238 prediction 0.699626808089801 Functional Loss - BCDIN3D ENSG00000186666 CDS Human protein_coding chr12:50232402 chr12:50232398 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_50149 0 0 1 0 0 Ribosome 0.500231643934785 0.50023164394034 0.4747559 0 hm5C_site_45501 DeepMRMD:0.4747559;iRNA_m5C:0 45502 chr8 67066494 67066494 1 + A C UCEC 67066490 + 67066470 67066510 41 GGATTCGAATGTACGGAAGGCAGAAGTGGCAGCAGCCGCAG GGATTCGAATGTACGGAAGGCAGACGTGGCAGCAGCCGCAG < 41bp 0.850598662937813 0.500845170146171 0.6670382 0.47322953 prediction 0.699506985583284 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67066490 chr8:67066494 nonsynonymous SNV 0.977 0 25 hm5C_associated_SNPs_50150 0 0 0 0 1 exosome 0.50023164392108 0.500231639699723 0.3340764 8.44271541566854e-09 hm5C_site_45502 DeepMRMD:0.3340764;iRNA_m5C:8.44271541566854e-09 45503 chr3 196387949 196387949 1 + G T LUSC 196387946 + 196387926 196387966 41 GCTGTGGCCTGGGGGCATTGCCAGACTGCCCATTCCAAGGG GCTGTGGCCTGGGGGCATTGCCATACTGCCCATTCCAAGGG < 41bp 0.849729392382491 0.49743857436427 0.83700484 0.30367708 prediction 0.699458784764983 Functional Loss - NRROS ENSG00000174004 CDS Human protein_coding chr3:196387946 chr3:196387949 nonsynonymous SNV 0.006 2 24 hm5C_associated_SNPs_50151 0 0 0 0 0 chromatin 0.500231644126241 0.500231643944367 0.67400968 3.63748142717668e-10 hm5C_site_45503 DeepMRMD:0.67400968;iRNA_m5C:3.63748142717668e-10 45504 chr17 35297912 35297912 1 + A C KIRP 35297908 + 35297888 35297928 41 TCTGTCCTTTCCCTCTTAGCCACCACGGGCAGTGACCCCAG TCTGTCCTTTCCCTCTTAGCCACCCCGGGCAGTGACCCCAG < 41bp 0.87783278439373 0.528122849894465 0.061849743 0.08667165 prediction 0.699419868998531 Functional Loss - LHX1 ENSG00000132130 CDS Human other chr17:35297908 chr17:35297912 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_50152 0 0 0 0 1 exosome 0.500231643921092 0.500231643921093 0 0 hm5C_site_45504 DeepMRMD:0;iRNA_m5C:0 45505 chr5 23527596 23527596 1 + G T LUAD 23527593 + 23527573 23527613 41 CAGTCACCAGAGGACACACACAGGGGAGAAGCCCTATGTCT CAGTCACCAGAGGACACACACAGTGGAGAAGCCCTATGTCT < 41bp 0.858561921797066 0.508868741030355 0.9225429 0.6779611 prediction 0.699386361533422 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23527593 chr5:23527596 nonsynonymous SNV 0.803 3 24 hm5C_associated_SNPs_50153 0 0 0 0 0 unknown 0.500231645491968 0.50023164425114 0.4891636 2.48165687999347e-09 hm5C_site_45505 DeepMRMD:0.4891636;iRNA_m5C:2.48165687999347e-09 45506 chr17 9631535 9631535 1 + G T STAD 9631532 + 9631512 9631552 41 GGATGAGAAGTCAGCATCGCCGAGGTCCAACGTCGCCCTTC GGATGAGAAGTCAGCATCGCCGATGTCCAACGTCGCCCTTC < 41bp 0.849681585198998 0.49921510420746 0.83822304 0.23039171 prediction 0.699363170397996 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9631532 chr17:9631535 nonsynonymous SNV 0.025 2 24 hm5C_associated_SNPs_50154 0 0 0 0 0 cytosol 0.500231689999604 0.500231643918957 0.67644608 9.21612925974813e-08 hm5C_site_45506 DeepMRMD:0.67644608;iRNA_m5C:9.21612925974813e-08 45507 chr12 54447975 54447975 1 + A C rs562717137 54447971 + 54447951 54447991 41 GGCCGGCCCAGGCGGGCCACCACCACCCCGAGAAATCACAG GGCCGGCCCAGGCGGGCCACCACCCCCCCGAGAAATCACAG < 41bp 0.84964593450096 0.482774924811195 0.44450948 0.35019076 prediction 0.699291869001921 Functional Loss - HOXC4 ENSG00000198353;ENSG00000273266 CDS Human other chr12:54447971 chr12:54447975 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_50155 0 0 0 0 0 exosome 0.50023164392111 0.500231645530716 0 0 hm5C_site_45507 DeepMRMD:0;iRNA_m5C:0 45508 chr7 128366916 128366916 1 + A C STAD 128366912 + 128366892 128366932 41 AGCAGAAAGGTGGAGACCAACAAGAACAGCTCAGGTAAGGG AGCAGAAAGGTGGAGACCAACAAGCACAGCTCAGGTAAGGG < 41bp 0.849610291080962 0.495502285908978 0.85954285 0.5497476 prediction 0.699220582161923 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128366912 chr7:128366916 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_50156 0 0 0 2 2 exosome 0.500231643921092 0.500231643921165 0.6195905 0 hm5C_site_45508 DeepMRMD:0.6195905;iRNA_m5C:0 45509 chr9 34506780 34506780 1 + A C LUSC 34506776 + 34506756 34506796 41 GTGGCAGTAGGCCACTATGACGGCAACGTGGCCATTTACAA GTGGCAGTAGGCCACTATGACGGCCACGTGGCCATTTACAA < 41bp 0.874506413932813 0.524921086632935 0.49775115 0.39846683 prediction 0.699170654599756 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34506776 chr9:34506780 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_50157 0 0 0 0 1 unknown 0.500231646301542 0.500231643410501 0 5.78208281254433e-09 hm5C_site_45509 DeepMRMD:0;iRNA_m5C:5.78208281254433e-09 45510 chr17 56274525 56274525 1 + G T UCEC 56274522 + 56274502 56274542 41 TGGCCATCAACCAGCGCTTTCAAGACAACGGCCGGGCCCTG TGGCCATCAACCAGCGCTTTCAATACAACGGCCGGGCCCTG < 41bp 0.85684938745359 0.507289272423015 0.6389665 0.30818498 prediction 0.699120230061152 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56274522 chr17:56274525 nonsynonymous SNV 0.074 4 24 hm5C_associated_SNPs_50158 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0.277933 0 hm5C_site_45510 DeepMRMD:0.277933;iRNA_m5C:0 45511 chrX 48558921 48558921 1 + A C UCS 48558917 + 48558897 48558937 41 GCTGCCCGGGGGCGTCACTGCACAAGTTTGCCTACAATGAC GCTGCCCGGGGGCGTCACTGCACACGTTTGCCTACAATGAC < 41bp 0.849557187847547 0.477194214006055 0.22028074 0.10722324 prediction 0.699114375695094 Functional Loss - SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48558917 chrX:48558921 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_50159 0 0 1 0 0 Ribosome 0.500231644060097 0.500240106513634 0 0 hm5C_site_45511 DeepMRMD:0;iRNA_m5C:0 45512 chr9 91961856 91961856 1 + A C COAD 91961852 + 91961832 91961872 41 TCAGGGGAGAGAGGCCGCCGCATGAGTCAAATGAAGACCCC TCAGGGGAGAGAGGCCGCCGCATGCGTCAAATGAAGACCCC < 41bp 0.85572112953695 0.50643312350983 0.24937141 0.21318987 prediction 0.698576012054239 Functional Loss - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91961852 chr9:91961856 nonsynonymous SNV 0.047 1 25 hm5C_associated_SNPs_50160 0 0 1 0 1 Cytosol 0.500231643885505 0.500231643919815 0 0 hm5C_site_45512 DeepMRMD:0;iRNA_m5C:0 45513 chr3 14485210 14485210 1 + G T CESC 14485207 + 14485187 14485227 41 GGACATCCTGAAGCCCTCACCAGGGAAGAGCCCAGGCACGC GGACATCCTGAAGCCCTCACCAGTGAAGAGCCCAGGCACGC < 41bp 0.851942197370385 0.502667176728099 0.8896055 0.28255165 prediction 0.698550041284573 Functional Loss - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14485207 chr3:14485210 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_50161 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643920997 0.779211 1.91402449445377e-13 hm5C_site_45513 DeepMRMD:0.779211;iRNA_m5C:1.91402449445377e-13 45514 chr19 19162680 19162680 1 + G T UCEC 19162677 + 19162657 19162697 41 AGCCAGACCTCCTGGATGCCCAGGGCCTGCAGCTCCTAGTG AGCCAGACCTCCTGGATGCCCAGTGCCTGCAGCTCCTAGTG < 41bp 0.849227953251815 0.492530787010445 0.89887303 0.3940166 prediction 0.698455906503631 Functional Loss - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19162677 chr19:19162680 nonsynonymous SNV 0.115 4 24 hm5C_associated_SNPs_50162 0 0 1 0 0 Ribosome 0.500231643920799 0.500231643921092 0.79774606 0 hm5C_site_45514 DeepMRMD:0.79774606;iRNA_m5C:0 45515 chr3 196386694 196386694 1 + G T BRCA 196386691 + 196386671 196386711 41 AGCAGCCTCCCGCCCCACGCCCGGATGCTCACCCTGGATGC AGCAGCCTCCCGCCCCACGCCCGTATGCTCACCCTGGATGC < 41bp 0.851405328846688 0.502208163594602 0.89382386 0.1976963 prediction 0.698394330504171 Functional Loss - NRROS ENSG00000174004 CDS Human protein_coding chr3:196386691 chr3:196386694 synonymous SNV . 0 24 hm5C_associated_SNPs_50163 0 0 0 0 1 chromatin 0.500231660858837 0.500231643921092 0.78764772 3.38754888584702e-08 hm5C_site_45515 DeepMRMD:0.78764772;iRNA_m5C:3.38754888584702e-08 45516 chr5 121488479 121488479 1 + A C LUAD 121488475 + 121488455 121488495 41 AGCTCCACCAGCCACTCCCACAGAAGCCTCAGCCCCTTCCG AGCTCCACCAGCCACTCCCACAGACGCCTCAGCCCCTTCCG < 41bp 0.854005047777814 0.504946140191493 0.79175556 0.68997025 prediction 0.698117815172643 Functional Loss - ZNF474 ENSG00000164185 CDS Human protein_coding chr5:121488475 chr5:121488479 nonsynonymous SNV 0.849 1 25 hm5C_associated_SNPs_50164 0 0 0 0 0 membrane 0.500231643921093 0.500231643798562 0.20357062 2.45061970716165e-10 hm5C_site_45516 DeepMRMD:0.20357062;iRNA_m5C:2.45061970716165e-10 45517 chr5 140580775 140580775 1 + A C HNSC 140580771 + 140580751 140580791 41 GCACATCGGCAGTGTCAGCGCTACAGACAGAGACTCAGGCA GCACATCGGCAGTGTCAGCGCTACCGACAGAGACTCAGGCA < 41bp 0.86094633469484 0.511993616999258 0.2544217 0.23400912 prediction 0.697905435391165 Functional Loss - PCDHB11 ENSG00000197479 CDS Human protein_coding chr5:140580771 chr5:140580775 synonymous SNV . 0 25 hm5C_associated_SNPs_50165 0 0 0 0 0 Nucleus 0.500229950280787 0.500231433234842 0 0 hm5C_site_45517 DeepMRMD:0;iRNA_m5C:0 45518 chr3 38315785 38315785 1 + A C COAD 38315781 + 38315761 38315801 41 AGTTCAACCTGGTTTGTGATCGGAAGCACCTGAAGGACACC AGTTCAACCTGGTTTGTGATCGGACGCACCTGAAGGACACC < 41bp 0.85479114104391 0.505910816740607 0.9089595 0.9108968 prediction 0.697760648606606 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38315781 chr3:38315785 nonsynonymous SNV 0.988 1 25 hm5C_associated_SNPs_50166 0 0 0 0 2 chromatin 0.500231643903596 0.500231025719713 0 1.2363677650562e-06 hm5C_site_45518 DeepMRMD:0;iRNA_m5C:1.2363677650562e-06 45519 chr14 76964593 76964593 1 + A C LUSC 76964589 + 76964569 76964609 41 TCGAGGATCTAGAGGCTGTCCAGAAGCTGCAGGACCTGCTG TCGAGGATCTAGAGGCTGTCCAGACGCTGCAGGACCTGCTG < 41bp 0.848863285207032 0.496488659102468 0.796069 0.6404163 prediction 0.697726570414063 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76964589 chr14:76964593 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_50167 0 0 1 0 1 Nucleus 0.500231636768263 0.500226637718944 0.3113054 9.99809863899692e-06 hm5C_site_45519 DeepMRMD:0.3113054;iRNA_m5C:9.99809863899692e-06 45520 chrX 153421961 153421961 1 + A C SKCM 153421957 + 153421937 153421977 41 GCCCTGCCGGCCTACTTTGCCAAAAGTGCCACTATCTACAA GCCCTGCCGGCCTACTTTGCCAAACGTGCCACTATCTACAA < 41bp 0.848755180932435 0.490565081235637 0.93641675 0.9511863 prediction 0.69751036186487 Functional Loss - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153421957 chrX:153421961 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50168 0 0 0 0 1 unknown 0.500231643921092 0.500231643921094 0 0 hm5C_site_45520 DeepMRMD:0;iRNA_m5C:0 45521 chr20 18297348 18297348 1 + A C OV 18297344 + 18297324 18297364 41 CGTGTGGGCGGGGCTTCAGCCTCAAGTCTCACCTCAGCAGA CGTGTGGGCGGGGCTTCAGCCTCACGTCTCACCTCAGCAGA < 41bp 0.858252055714953 0.509527235251332 0.21753457 0.09905088 prediction 0.697449640927241 Functional Loss - ZNF133 ENSG00000125846 CDS Human protein_coding chr20:18297344 chr20:18297348 nonsynonymous SNV 0.082 2 25 hm5C_associated_SNPs_50169 0 0 0 0 0 Cytosol 0.50023164706423 0.500237315177884 0 0 hm5C_site_45521 DeepMRMD:0;iRNA_m5C:0 45522 chr1 247607342 247607342 1 + A C UCEC 247607338 + 247607318 247607358 41 CCTCGGTACTCAGCACTAATCAGAATCTCACGCACCTTTAC CCTCGGTACTCAGCACTAATCAGACTCTCACGCACCTTTAC < 41bp 0.859176312405684 0.510455169440162 0.9457865 0.94266737 prediction 0.697442285931044 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247607338 chr1:247607342 nonsynonymous SNV 0.019 0 25 hm5C_associated_SNPs_50170 0 0 0 0 1 Nucleus 0.500231643921091 0.500231643921094 0.00623825999999994 0 hm5C_site_45522 DeepMRMD:0.00623825999999994;iRNA_m5C:0 45523 chr11 123811152 123811152 1 + A C rs149669878 123811148 + 123811128 123811168 41 AAGGCCGTCTCTGTGCTATACACAATTGTCACCCCCATGCT AAGGCCGTCTCTGTGCTATACACACTTGTCACCCCCATGCT < 41bp 0.848679941839352 0.496747186846366 0.010262281 0.0065706074 prediction 0.697359883678704 Functional Loss - OR4D5 ENSG00000171014 CDS Human protein_coding chr11:123811148 chr11:123811152 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_50171 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_45523 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 45524 chr21 43711704 43711704 1 + A C KIRC 43711700 + 43711680 43711720 41 GTGCTGTTTGCCGCGCTGGGCACCATGACCTCCCTGGTGGC GTGCTGTTTGCCGCGCTGGGCACCCTGACCTCCCTGGTGGC < 41bp 0.848643491910543 0.48524340398769 0.11192089 0.044217825 prediction 0.697286983821086 Functional Loss - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711700 chr21:43711704 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_50172 0 0 0 0 2 Cytosol 0.500231643926569 0.500231643921084 0 1.09716680185556e-11 hm5C_site_45524 DeepMRMD:0;iRNA_m5C:1.09716680185556e-11 45525 chr12 3701486 3701486 1 + A C OV 3701482 + 3701462 3701502 41 CGGAGGGGGGAGGAAATCTACGGGACCATATCCATGAAGCC CGGAGGGGGGAGGAAATCTACGGGCCCATATCCATGAAGCC < 41bp 0.857741009327406 0.50914781759371 0.73413944 0.7963081 prediction 0.697186383467391 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701482 chr12:3701486 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_50173 0 0 0 2 2 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_45525 DeepMRMD:0;iRNA_m5C:0 45526 chrX 101970465 101970465 1 + G T LUAD 101970462 + 101970442 101970482 41 AGAGGAGGCCTCTAATGAGTCTGGGTTCTGGTCAGCAGATG AGAGGAGGCCTCTAATGAGTCTGTGTTCTGGTCAGCAGATG < 41bp 0.848510644265511 0.499710077022043 0.3387025 0.08678973 prediction 0.697021288531022 Functional Loss - ARMCX5-GPRASP2;GPRASP2 ENSG00000158301 CDS Human protein_coding chrX:101970462 chrX:101970465 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50174 0 0 0 0 0 unknown 0.500231643921093 0.500231643921477 0 0 hm5C_site_45526 DeepMRMD:0;iRNA_m5C:0 45527 chr14 24601573 24601573 1 + G T BLCA 24601570 + 24601550 24601590 41 GCCGTGTGGCGGGGAGCCGGCCGGGCCTTCCTGCTCATCGA GCCGTGTGGCGGGGAGCCGGCCGTGCCTTCCTGCTCATCGA < 41bp 0.848476831639357 0.492559193419954 0.8358377 0.13339216 prediction 0.696953663278715 Functional Loss - FITM1 ENSG00000139914 CDS Human protein_coding chr14:24601570 chr14:24601573 synonymous SNV . 0 24 hm5C_associated_SNPs_50175 0 0 0 0 0 insoluble cytoplasm 0.500231643921088 0.500231643920742 0.6716754 6.90558721316847e-13 hm5C_site_45527 DeepMRMD:0.6716754;iRNA_m5C:6.90558721316847e-13 45528 chr19 36611662 36611662 1 + G T LUSC 36611659 + 36611639 36611679 41 GGTGAGTATGAGGACGTGTCCCGGGTGGAGAAGTACACGAT GGTGAGTATGAGGACGTGTCCCGTGTGGAGAAGTACACGAT < 41bp 0.852693715719943 0.504273728286787 0.9177927 0.37727588 prediction 0.696839974866311 Functional Loss - TBCB ENSG00000105254 CDS Human protein_coding chr19:36611659 chr19:36611662 synonymous SNV . 0 24 hm5C_associated_SNPs_50176 0 0 1 0 2 Ribosome 0.500231643921026 0.500231643920467 0.8355854 1.11843867500738e-12 hm5C_site_45528 DeepMRMD:0.8355854;iRNA_m5C:1.11843867500738e-12 45529 chr1 156618653 156618653 1 + G T STAD 156618650 + 156618630 156618670 41 GCTTCAACGTCTACTGCTTCCGAGGTGAGCCCACCTCCCTG GCTTCAACGTCTACTGCTTCCGATGTGAGCCCACCTCCCTG < 41bp 0.848281738457995 0.49429351161756 0.8792001 0.22425443 prediction 0.69656347691599 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156618650 chr1:156618653 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_50177 0 0 0 0 1 chromatin 0.500231643932237 0.500231638901502 0.7584002 1.00614698794743e-08 hm5C_site_45529 DeepMRMD:0.7584002;iRNA_m5C:1.00614698794743e-08 45530 chrX 151092966 151092966 1 + G T LGG 151092963 + 151092943 151092983 41 CTATGAGTTCCTGTGGGGTCCAAGGGCTCTGGCTGAAACCA CTATGAGTTCCTGTGGGGTCCAATGGCTCTGGCTGAAACCA < 41bp 0.84993393212958 0.501653010955996 0.503186 0.12618619 prediction 0.696561842347168 Functional Loss - MAGEA4 ENSG00000147381 CDS Human protein_coding chrX:151092963 chrX:151092966 nonsynonymous SNV 0.007 4 24 hm5C_associated_SNPs_50178 0 0 0 0 0 unknown 0.500231643921161 0.500231643921772 0.00637200000000004 0 hm5C_site_45530 DeepMRMD:0.00637200000000004;iRNA_m5C:0 45531 chr17 30814747 30814747 1 + A C COAD 30814743 + 30814723 30814763 41 GCCGTACAGAACAGCAAGAACGCCAAGGACAAGAACCTGAA GCCGTACAGAACAGCAAGAACGCCCAGGACAAGAACCTGAA < 41bp 0.875249929921224 0.527058171381872 0.7535445 0.12673292 prediction 0.696383517078704 Functional Loss - CDK5R1 ENSG00000176749 CDS Human protein_coding chr17:30814743 chr17:30814747 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50179 0 0 0 0 0 chromatin 0.500231643927651 0.500231643921179 0.507089 1.29440902441047e-11 hm5C_site_45531 DeepMRMD:0.507089;iRNA_m5C:1.29440902441047e-11 45532 chr14 23237290 23237290 1 + G T LIHC 23237287 + 23237267 23237307 41 AGAGCTTCGCTGAACTGGGGCTGGGGTCATACACCCCAGTG AGAGCTTCGCTGAACTGGGGCTGTGGTCATACACCCCAGTG < 41bp 0.861072091678046 0.51301891692383 0.8244276 0.33725524 prediction 0.696106349508432 Functional Loss - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23237287 chr14:23237290 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_50180 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.6488552 0 hm5C_site_45532 DeepMRMD:0.6488552;iRNA_m5C:0 45533 chrX 10176267 10176267 1 + G T LUSC 10176264 + 10176244 10176284 41 TTCATCCTGCTTGGGGTCTTCGGGGGCTTGTGGGGAACCCT TTCATCCTGCTTGGGGTCTTCGGTGGCTTGTGGGGAACCCT < 41bp 0.848032025624602 0.492521707142137 0.91532457 0.36157578 prediction 0.696064051249204 Functional Loss - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10176264 chrX:10176267 synonymous SNV . 0 24 hm5C_associated_SNPs_50181 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.83064914 0 hm5C_site_45533 DeepMRMD:0.83064914;iRNA_m5C:0 45534 chr16 86544452 86544452 1 + A C SKCM 86544448 + 86544428 86544468 41 TTCCGGGGCTCCTACCAGGGCTGGAAGAACTCCGTGCGCCA TTCCGGGGCTCCTACCAGGGCTGGCAGAACTCCGTGCGCCA < 41bp 0.853762431526593 0.505743367319514 0.2675739 0.36487865 prediction 0.696038128414159 Functional Loss - FOXF1 ENSG00000103241 CDS Human protein_coding chr16:86544448 chr16:86544452 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_50182 0 0 0 0 0 Cytoplasm 0.500231643921092 0.500231643921092 0 0 hm5C_site_45534 DeepMRMD:0;iRNA_m5C:0 45535 chr19 49376608 49376608 1 + G T LUAD 49376605 + 49376585 49376625 41 CCTGGAGCCGCCTGAGGGGCCTGGGACCTCTAGAGCCCTGG CCTGGAGCCGCCTGAGGGGCCTGTGACCTCTAGAGCCCTGG < 41bp 0.851685466238177 0.503712297822194 0.7384531 0.3822904 prediction 0.695946336831967 Functional Loss - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49376605 chr19:49376608 stopgain 0.259 0 24 hm5C_associated_SNPs_50183 0 0 1 0 0 Cytosol 0.500231643921093 0.500231638495746 0.4769062 1.08506943430342e-08 hm5C_site_45535 DeepMRMD:0.4769062;iRNA_m5C:1.08506943430342e-08 45536 chr1 38027737 38027737 1 + A C rs138550216 38027733 + 38027713 38027753 41 TGGAGAGGCAAGTGAACGAGCAGAAGGCAAAATGTGAAGCC TGGAGAGGCAAGTGAACGAGCAGACGGCAAAATGTGAAGCC < 41bp 0.859524595526691 0.511569018880754 0.3664552 0.3379594 prediction 0.695911153291874 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38027733 chr1:38027737 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_50184 0 0 0 2 1 Cytosol 0.500231644026387 0.500231648584085 0 0 hm5C_site_45536 DeepMRMD:0;iRNA_m5C:0 45537 chr5 5318335 5318335 1 + A C rs114190883 5318331 + 5318311 5318351 41 CGGCCTCAGGCTGCCTCCTGCACCAGAAGCCTTCGGCCTCC CGGCCTCAGGCTGCCTCCTGCACCCGAAGCCTTCGGCCTCC < 41bp 0.847930227580676 0.476680102553101 0.7919043 0.66982824 prediction 0.695860455161352 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5318331 chr5:5318335 nonsynonymous SNV 0.564 2 25 hm5C_associated_SNPs_50185 0 0 0 0 2 exosome 0.500231643921095 0.500231643921094 0.24415212 2.44249065417534e-15 hm5C_site_45537 DeepMRMD:0.24415212;iRNA_m5C:2.44249065417534e-15 45538 chr11 64802344 64802344 1 + G T UCEC 64802341 + 64802321 64802361 41 CGGTTTGAAGCCTCAGTGATCGAGGAGCGGCGAAAGGGGGC CGGTTTGAAGCCTCAGTGATCGATGAGCGGCGAAAGGGGGC < 41bp 0.855329624065357 0.507454962451543 0.9300753 0.7529925 prediction 0.695749323227629 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802341 chr11:64802344 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_50186 0 0 1 0 2 Ribosome 0.500231643920862 0.500231993981293 0.3541656 0 hm5C_site_45538 DeepMRMD:0.3541656;iRNA_m5C:0 45539 chr2 105859262 105859262 1 + A C BLCA 105859258 + 105859238 105859278 41 GCGTCCTGTGGCTCAGTTACCTCAAGTCCGTCTTCAACCCC GCGTCCTGTGGCTCAGTTACCTCACGTCCGTCTTCAACCCC < 41bp 0.854621933185421 0.506762298700811 0.22995996 0.23297387 prediction 0.69571926896922 Functional Loss - GPR45 ENSG00000135973 CDS Human protein_coding chr2:105859258 chr2:105859262 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50187 0 0 0 0 0 unknown 0.500231832631016 0.50023164305919 0 3.79143652917691e-07 hm5C_site_45539 DeepMRMD:0;iRNA_m5C:3.79143652917691e-07 45540 chr1 26357001 26357001 1 + G T LUAD 26356998 + 26356978 26357018 41 CCTCCAGGAGATGTCCCCTGCACGGGTCCTCGCCCTGCGTC CCTCCAGGAGATGTCCCCTGCACTGGTCCTCGCCCTGCGTC < 41bp 0.857645785821646 0.509807884325036 0.65057063 0.17036146 prediction 0.69567580299322 Functional Loss - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26356998 chr1:26357001 nonsynonymous SNV 0.882 3 24 hm5C_associated_SNPs_50188 0 0 0 0 2 chromatin 0.500231643918295 0.500232000398945 0.30114126 0 hm5C_site_45540 DeepMRMD:0.30114126;iRNA_m5C:0 45541 chr11 113270160 113270160 1 + A C rs2734849 113270156 + 113270136 113270176 41 CCCGTCAGGCTGACCCCAACCTGCATGAGGCTGAGGGCAAG CCCGTCAGGCTGACCCCAACCTGCCTGAGGCTGAGGGCAAG < 41bp 0.880721484571634 0.532908740989506 0.09099153 0.058793306 prediction 0.695625487164255 Functional Loss - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113270156 chr11:113270160 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_50189 0 0 0 0 0 exosome 0.500231650394142 0.500231643744188 0 1.32999087298913e-08 hm5C_site_45541 DeepMRMD:0;iRNA_m5C:1.32999087298913e-08 45542 chr20 5903072 5903072 1 + A C STAD 5903068 + 5903048 5903088 41 AAGAGACCCAGCTGATGCCTCGGAAGCCCACGAGTCCTCCA AAGAGACCCAGCTGATGCCTCGGACGCCCACGAGTCCTCCA < 41bp 0.847810636491002 0.496764209549102 0.80177206 0.4826267 prediction 0.695621272982004 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5903068 chr20:5903072 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_50190 0 0 0 0 1 exosome 0.500213745124558 0.496583388835713 0.60354412 0.000427490249116813 hm5C_site_45542 DeepMRMD:0.60354412;iRNA_m5C:0.000427490249116813 45543 chr16 50136229 50136229 1 + A C UCEC 50136225 + 50136205 50136245 41 AGATCCTTCCCTTGTGGTAGCAGGAGAAGCTTTGGATGCCC AGATCCTTCCCTTGTGGTAGCAGGCGAAGCTTTGGATGCCC < 41bp 0.852274028182342 0.504555997234746 0.92612517 0.90976506 prediction 0.695436061895193 Functional Loss - HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50136225 chr16:50136229 synonymous SNV . 0 25 hm5C_associated_SNPs_50191 0 0 1 0 1 Ribosome 0.501030723053884 0.500231639296451 0.0327202200000001 0.00159816751486486 hm5C_site_45543 DeepMRMD:0.0327202200000001;iRNA_m5C:0.00159816751486486 45544 chr3 136701065 136701065 1 + A C STAD 136701061 + 136701041 136701081 41 CAGCAGCTGGTGCTCACTCACTGAAGGTCCTGAGTGTGATG CAGCAGCTGGTGCTCACTCACTGACGGTCCTGAGTGTGATG < 41bp 0.847711529742508 0.471540215892397 0.2933557 0.09994626 prediction 0.695423059485017 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136701061 chr3:136701065 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_50192 0 0 0 1 1 nucleoplasm 0.500231643921088 0.500231561602837 0 1.64636501764903e-07 hm5C_site_45544 DeepMRMD:0;iRNA_m5C:1.64636501764903e-07 45545 chr1 111781499 111781499 1 + G T SARC 111781496 + 111781476 111781516 41 CACCGTGGGGGCCCCTGCCTCTGGCCCTGGAGCTGCTGGAC CACCGTGGGGGCCCCTGCCTCTGTCCCTGGAGCTGCTGGAC < 41bp 0.847709158762788 0.498938874241319 0.8286394 0.46361342 prediction 0.695418317525575 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111781496 chr1:111781499 nonsynonymous SNV 0.985 3 24 hm5C_associated_SNPs_50193 0 0 0 0 1 exosome 0.500231642969534 0.500231644019749 0.6572788 0 hm5C_site_45545 DeepMRMD:0.6572788;iRNA_m5C:0 45546 chr11 65479513 65479513 1 + A C rs568372894 65479509 + 65479489 65479529 41 ACGTGACGGACTCAGTAGACCGCCACTGGCTGTGCACGTTA ACGTGACGGACTCAGTAGACCGCCCCTGGCTGTGCACGTTA < 41bp 0.84800802329338 0.500327824240862 0.8004309 0.15282837 prediction 0.695360398105035 Functional Loss - KAT5 ENSG00000172977 UTR5 Human protein_coding chr11:65479509 chr11:65479513 . . 0 25 hm5C_associated_SNPs_50194 0 0 0 0 0 Cytosol 0.500218029001105 0.500231396033235 0.6008618 0 hm5C_site_45546 DeepMRMD:0.6008618;iRNA_m5C:0 45547 chr12 100042044 100042044 1 + A C LUAD 100042040 + 100042020 100042060 41 CCTCCATGGGGAAGCTGCAGCGGCAACTGTACAAAGGCGAG CCTCCATGGGGAAGCTGCAGCGGCCACTGTACAAAGGCGAG < 41bp 0.847670276124961 0.49628521259942 0.45048675 0.47315016 prediction 0.695340552249921 Functional Loss - FAM71C ENSG00000180219 CDS Human protein_coding chr12:100042040 chr12:100042044 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_50195 0 0 0 0 0 exosome 0.500231642996106 0.500231643921092 0 0 hm5C_site_45547 DeepMRMD:0;iRNA_m5C:0 45548 chr5 177547530 177547530 1 + G T UCEC 177547527 + 177547507 177547547 41 GCTCCCTGGACCGGGCCTCTCAAGGACCCAAGGAGGCTGGG GCTCCCTGGACCGGGCCTCTCAATGACCCAAGGAGGCTGGG < 41bp 0.853459479863555 0.50581345208501 0.89552915 0.35136506 prediction 0.695292055557089 Functional Loss - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177547527 chr5:177547530 stopgain 0.022 0 24 hm5C_associated_SNPs_50196 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.7910583 0 hm5C_site_45548 DeepMRMD:0.7910583;iRNA_m5C:0 45549 chr19 49261318 49261318 1 + A C LGG 49261314 + 49261294 49261334 41 CAAGTCCCCACACCGGGACCCTGCACCCCGAGGACCAGCTC CAAGTCCCCACACCGGGACCCTGCCCCCCGAGGACCAGCTC < 41bp 0.847605875871818 0.479680786219164 0.23525718 0.2511326 prediction 0.695211751743636 Functional Loss - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49261314 chr19:49261318 synonymous SNV . 0 25 hm5C_associated_SNPs_50197 0 0 0 0 0 unknown 0.500231643893453 0.500198965716122 0 6.5356354662427e-05 hm5C_site_45549 DeepMRMD:0;iRNA_m5C:6.5356354662427e-05 45550 chr2 102851535 102851535 1 + G T UCEC 102851532 + 102851512 102851552 41 CTCATTGAGCTGGAGAAAATCGAGGACTACACAGTCATGCC CTCATTGAGCTGGAGAAAATCGATGACTACACAGTCATGCC < 41bp 0.849725262804944 0.502156622965736 0.802969 0.15706569 prediction 0.695137279678417 Functional Loss - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102851532 chr2:102851535 nonsynonymous SNV 0.205 0 24 hm5C_associated_SNPs_50198 0 0 0 0 0 exosome 0.500207399426654 0.500231504009725 0.605938 0 hm5C_site_45550 DeepMRMD:0.605938;iRNA_m5C:0 45551 chr11 92715227 92715227 1 + G T COAD 92715224 + 92715204 92715244 41 TCGCTGTGGCCATCAACCCCCAAGAAATGGCTCCCCAGATC TCGCTGTGGCCATCAACCCCCAATAAATGGCTCCCCAGATC < 41bp 0.848108571657217 0.500582444265858 0.3912543 0.1274648 prediction 0.695052254782717 Functional Loss - MTNR1B ENSG00000134640 CDS Human protein_coding chr11:92715224 chr11:92715227 stopgain 0.030 0 24 hm5C_associated_SNPs_50199 0 0 0 0 0 unknown 0.500231643934584 0.500231643920775 0 2.76179079605754e-11 hm5C_site_45551 DeepMRMD:0;iRNA_m5C:2.76179079605754e-11 45552 chr17 4836790 4836790 1 + A C UCEC 4836786 + 4836766 4836806 41 AGACCTATATGATTACTACCCAGAAGAGGACACTGAGGGCG AGACCTATATGATTACTACCCAGACGAGGACACTGAGGGCG < 41bp 0.847468510135409 0.495369131402741 0.510716 0.36645466 prediction 0.694937020270818 Functional Loss - GP1BA ENSG00000185245 CDS Human protein_coding chr17:4836786 chr17:4836790 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_50200 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0214319999999999 0 hm5C_site_45552 DeepMRMD:0.0214319999999999;iRNA_m5C:0 45553 chr16 85946788 85946788 1 + G T LUAD 85946785 + 85946765 85946805 41 TCAAAAGGAGCCCTTCCCCGCCGGAGGCCTGTCGGAGTCAG TCAAAAGGAGCCCTTCCCCGCCGTAGGCCTGTCGGAGTCAG < 41bp 0.854486406999831 0.507041637955769 0.47242782 0.25293082 prediction 0.694889538088124 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85946785 chr16:85946788 stopgain 0.921 0 24 hm5C_associated_SNPs_50201 0 0 0 0 2 Endoplasmic reticulum 0.500231643922044 0.500231643921094 0 1.90025772894842e-12 hm5C_site_45553 DeepMRMD:0;iRNA_m5C:1.90025772894842e-12 45554 chr8 21959251 21959251 1 + G T UCEC 21959248 + 21959228 21959268 41 TGCAGCTCCCGCGTCGCCTCCTGGGGCTGGCCTCTGACCCC TGCAGCTCCCGCGTCGCCTCCTGTGGCTGGCCTCTGACCCC < 41bp 0.847436328377823 0.485710593091594 0.8190359 0.07674289 prediction 0.694872656755646 Functional Loss - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21959248 chr8:21959251 nonsynonymous SNV 0.598 4 24 hm5C_associated_SNPs_50202 0 0 1 0 1 chromatin 0.500231643670808 0.500231643913331 0.6380718 0 hm5C_site_45554 DeepMRMD:0.6380718;iRNA_m5C:0 45555 chrX 47039407 47039407 1 + G T LUSC 47039404 + 47039384 47039424 41 ACAAGCAGACCCAACTGAACCGCGGCTTTGCCTTCATCCAG ACAAGCAGACCCAACTGAACCGCTGCTTTGCCTTCATCCAG < 41bp 0.848021658098626 0.500589048286384 0.32276404 0.053966224 prediction 0.694865219624484 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47039404 chrX:47039407 nonsynonymous SNV 0.938 4 24 hm5C_associated_SNPs_50203 0 0 1 0 2 Ribosome 0.500231643920477 0.500231661896017 0 0 hm5C_site_45555 DeepMRMD:0;iRNA_m5C:0 45556 chr19 1049416 1049416 1 + G T HNSC 1049413 + 1049393 1049433 41 ACCGCCTTCCTGGGCCACAACGGGGCCGGCAAGACCACCAC ACCGCCTTCCTGGGCCACAACGGTGCCGGCAAGACCACCAC < 41bp 0.847423108602696 0.499281930443701 0.9466335 0.7514856 prediction 0.694846217205392 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1049413 chr19:1049416 synonymous SNV . 0 24 hm5C_associated_SNPs_50204 0 0 0 0 1 Endoplasmic reticulum 0.50023164392114 0.500231643921092 0.3902958 9.54791801177635e-14 hm5C_site_45556 DeepMRMD:0.3902958;iRNA_m5C:9.54791801177635e-14 45557 chr12 64879736 64879736 1 + A C LUSC 64879732 + 64879712 64879752 41 ACAGGGGTTGTGTGTTATGCCTGCAGAATTGCCAGTACCTT ACAGGGGTTGTGTGTTATGCCTGCCGAATTGCCAGTACCTT < 41bp 0.847396764946286 0.48407217351613 0.12375343 0.029556692 prediction 0.694793529892572 Functional Loss - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64879732 chr12:64879736 synonymous SNV . 0 25 hm5C_associated_SNPs_50205 0 0 1 0 2 chromatin 0.500231643921098 0.500231643921388 0 0 hm5C_site_45557 DeepMRMD:0;iRNA_m5C:0 45558 chr19 56190062 56190062 1 + G T UCEC 56190059 + 56190039 56190079 41 AACTACTCAGAGGCGGAGATCAAGGTTCGAGAGGCCACGAG AACTACTCAGAGGCGGAGATCAATGTTCGAGAGGCCACGAG < 41bp 0.854845803440753 0.507450263029098 0.935645 0.9148931 prediction 0.694791080823309 Functional Loss - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56190059 chr19:56190062 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50206 0 0 1 0 0 chromatin 0.500231643921086 0.500231642318896 0.0415037999999999 3.20437987255673e-09 hm5C_site_45558 DeepMRMD:0.0415037999999999;iRNA_m5C:3.20437987255673e-09 45559 chr20 56140691 56140691 1 + A C GBM 56140687 + 56140667 56140707 41 CCAAGGAGGATGCCCTGAACCTGAAAGGCCTGGGGCACATC CCAAGGAGGATGCCCTGAACCTGACAGGCCTGGGGCACATC < 41bp 0.874069283083804 0.52668902745302 0.063987434 0.013708442 prediction 0.69476051126157 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56140687 chr20:56140691 nonsynonymous SNV 0.967 0 25 hm5C_associated_SNPs_50207 0 0 1 0 0 exosome 0.500231645081194 0.500234861644124 0 0 hm5C_site_45559 DeepMRMD:0;iRNA_m5C:0 45560 chr1 156348152 156348152 1 + A C UCEC 156348148 + 156348128 156348168 41 AGCTGGAGAAGAGCAAGCACCGCCAGGGCTCCGTCTACCAT AGCTGGAGAAGAGCAAGCACCGCCCGGGCTCCGTCTACCAT < 41bp 0.879013614305683 0.531650058766396 0.2538256 0.09595212 prediction 0.694727111078574 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348148 chr1:156348152 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_50208 0 0 1 1 2 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_45560 DeepMRMD:0;iRNA_m5C:0 45561 chr14 24909475 24909475 1 + C A rs3211056 24909478 - 24909458 24909498 41 AATGCTGAGTTTGCCCAGACCTTGGGTGCTGCCCTGGGCCG AATGCTGAGTTTGCCCAGACCTTTGGTGCTGCCCTGGGCCG < 41bp 0.847328868685224 0.491913016416902 0.13058725 0.073295385 prediction 0.694657737370448 Functional Loss - SDR39U1 ENSG00000100445 CDS Human protein_coding chr14:24909478 chr14:24909475 nonsynonymous SNV 0.957 1 24 hm5C_associated_SNPs_50209 0 0 1 0 0 nucleolus 0.500231643921092 0.50023164392109 0 5.32907051820075e-15 hm5C_site_45561 DeepMRMD:0;iRNA_m5C:5.32907051820075e-15 45562 chr17 76130988 76130988 1 + G T LUAD 76130985 + 76130965 76131005 41 GCTGCTCCAGTACCTGCCCCCTGGGGTCATCGCCCTGGTCA GCTGCTCCAGTACCTGCCCCCTGTGGTCATCGCCCTGGTCA < 41bp 0.847282520049435 0.483506779069028 0.45869637 0.059697747 prediction 0.694565040098871 Functional Loss - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76130985 chr17:76130988 nonsynonymous SNV 0.977 1 24 hm5C_associated_SNPs_50210 0 0 0 0 1 chromatin 0.500231638770386 0.500231643800722 0 0 hm5C_site_45562 DeepMRMD:0;iRNA_m5C:0 45563 chr7 128852125 128852125 1 + G T HNSC 128852122 + 128852102 128852142 41 GCCGACAGGGAGCGTGGACCCTGGTCTCCAACCCATTCTGC GCCGACAGGGAGCGTGGACCCTGTTCTCCAACCCATTCTGC < 41bp 0.847266441966587 0.497992485357033 0.031119704 0.02699408 prediction 0.694532883933173 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128852122 chr7:128852125 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_50211 0 0 0 0 0 cytosol 0.500231643921093 0.500231643921092 0 4.44089209850063e-16 hm5C_site_45563 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 45564 chr9 126133645 126133645 1 + G T LIHC 126133642 + 126133622 126133662 41 GGCCTGACCAGCTGCAGGACCTGGGGCAGCACGTGCACGTG GGCCTGACCAGCTGCAGGACCTGTGGCAGCACGTGCACGTG < 41bp 0.84724782758598 0.480018047816253 0.9197825 0.8827788 prediction 0.694495655171961 Functional Loss - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126133642 chr9:126133645 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_50212 0 0 0 0 0 exosome 0.500233031224747 0.500231737770337 0.0740073999999999 2.58690882004586e-06 hm5C_site_45564 DeepMRMD:0.0740073999999999;iRNA_m5C:2.58690882004586e-06 45565 chr1 155019710 155019710 1 + A C rs11264300 155019706 + 155019686 155019726 41 GAGGTGAAGGTCGGGGGAGACTCCATGCTAGCCCGGCTTCT GAGGTGAAGGTCGGGGGAGACTCCCTGCTAGCCCGGCTTCT < 41bp 0.847141628125781 0.460268432686198 0.9611397 0.33181423 prediction 0.694283256251562 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155019706 chr1:155019710 nonsynonymous SNV 0.941 0 25 hm5C_associated_SNPs_50213 0 0 0 0 2 nucleus 0.500231630587442 0.500231643925075 0.9222794 0 hm5C_site_45565 DeepMRMD:0.9222794;iRNA_m5C:0 45566 chr11 63960753 63960753 1 + G T LUAD 63960750 + 63960730 63960770 41 ACTGTCGACCTAAAGCCTGACTGGGGCAAGGTCAGCTGTGG ACTGTCGACCTAAAGCCTGACTGTGGCAAGGTCAGCTGTGG < 41bp 0.847206409934576 0.500083385020537 0.51412374 0.114049315 prediction 0.694246049828077 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63960750 chr11:63960753 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50214 0 0 1 0 1 Ribosome 0.50023164392109 0.500232528877896 0.0282474800000001 0 hm5C_site_45566 DeepMRMD:0.0282474800000001;iRNA_m5C:0 45567 chr3 100170657 100170657 1 + A C LUSC 100170653 + 100170633 100170673 41 TTCGATGCCGTAGCCACGTACGGGATTACAGAAAATACTCA TTCGATGCCGTAGCCACGTACGGGCTTACAGAAAATACTCA < 41bp 0.853946396937632 0.506830797472665 0.89764977 0.88415265 prediction 0.694231198929934 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100170653 chr3:100170657 nonsynonymous SNV 0.028 0 25 hm5C_associated_SNPs_50215 0 0 0 1 1 chromatin 0.500231643848714 0.500230975122444 0.0269942400000001 1.33745254027318e-06 hm5C_site_45567 DeepMRMD:0.0269942400000001;iRNA_m5C:1.33745254027318e-06 45568 chr9 100071729 100071729 1 + A C BLCA 100071725 + 100071705 100071745 41 GTCCACTCCCTGGCGGCCACCAGGAAGCGGGCTGCAGAGCG GTCCACTCCCTGGCGGCCACCAGGCAGCGGGCTGCAGAGCG < 41bp 0.847082167183015 0.496523140698961 0.8420088 0.43774217 prediction 0.69416433436603 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100071725 chr9:100071729 nonsynonymous SNV 0.222 0 25 hm5C_associated_SNPs_50216 0 0 1 0 1 chromatin 0.500231643921093 0.500231643921092 0.6840176 2.22044604925031e-16 hm5C_site_45568 DeepMRMD:0.6840176;iRNA_m5C:2.22044604925031e-16 45569 chr1 46976618 46976618 1 + G T UCEC 46976615 + 46976595 46976635 41 TCCCGTCCCCAGGTGTGGTTCAAGAACCGCCGGGCCAAGTT TCCCGTCCCCAGGTGTGGTTCAATAACCGCCGGGCCAAGTT < 41bp 0.847077746194791 0.497500672241514 0.39803904 0.24705568 prediction 0.694155492389583 Functional Loss - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976615 chr1:46976618 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_50217 0 0 0 0 1 nucleolus 0.500231643943689 0.500231643916504 0 5.4370286051153e-11 hm5C_site_45569 DeepMRMD:0;iRNA_m5C:5.4370286051153e-11 45570 chr7 100320317 100320317 1 + G T LGG 100320314 + 100320294 100320334 41 AGCAGGCCGTAGAAGTCTGGCAGGGCCTGGCCCTGCTGTCG AGCAGGCCGTAGAAGTCTGGCAGTGCCTGGCCCTGCTGTCG < 41bp 0.847032157228389 0.487575412787519 0.8964511 0.30833435 prediction 0.694064314456777 Functional Loss - EPO ENSG00000130427 CDS Human protein_coding chr7:100320314 chr7:100320317 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_50218 0 0 1 0 1 exosome 0.500232885254408 0.500231643920797 0.7929022 2.48266722158164e-06 hm5C_site_45570 DeepMRMD:0.7929022;iRNA_m5C:2.48266722158164e-06 45571 chr1 43616487 43616487 1 + A C KIRC 43616483 + 43616463 43616503 41 GCATGATAACCTGGAGGAACCTGCAGATGGTAAGTCCTGGG GCATGATAACCTGGAGGAACCTGCCGATGGTAAGTCCTGGG < 41bp 0.847021644343831 0.47921158239938 0.27898467 0.22934106 prediction 0.694043288687661 Functional Loss - FAM183A ENSG00000186973 CDS Human protein_coding chr1:43616483 chr1:43616487 synonymous SNV . 0 25 hm5C_associated_SNPs_50219 0 0 0 0 2 exosome 0.500231643796272 0.500231643920755 0 0 hm5C_site_45571 DeepMRMD:0;iRNA_m5C:0 45572 chr16 22545898 22545898 1 + A C BRCA 22545894 + 22545874 22545914 41 CCCTCAGCAGATGATAATATCAAGACACCTGCCGAGCGTCT CCCTCAGCAGATGATAATATCAAGCCACCTGCCGAGCGTCT < 41bp 0.862468004443759 0.515556051293854 0.91602576 0.90429795 prediction 0.69382390629981 Functional Loss - NPIPB5 ENSG00000243716 CDS Human protein_coding chr16:22545894 chr16:22545898 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_50220 0 0 0 0 0 chromatin 0.50001701373031 0.500230028097562 0.02345562 0 hm5C_site_45572 DeepMRMD:0.02345562;iRNA_m5C:0 45573 chr20 3194649 3194649 1 + G T LUAD 3194646 + 3194626 3194666 41 TGCAGGTACAGGGGCCCGTGCTGGTTGAGGACACTTGTCTG TGCAGGTACAGGGGCCCGTGCTGTTTGAGGACACTTGTCTG < 41bp 0.846815367469618 0.490189230173171 0.4335707 0.3626452 prediction 0.693630734939235 Functional Loss - ITPA ENSG00000125877 CDS Human protein_coding chr20:3194646 chr20:3194649 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_50221 0 0 1 0 2 Cytosol 0.500231577152296 0.50023163061083 0 0 hm5C_site_45573 DeepMRMD:0;iRNA_m5C:0 45574 chr13 58207659 58207659 1 + G T LUAD 58207656 + 58207636 58207676 41 TTGACGTGCAGGCCCGAGACCTGGGGCCTAACCCTATCCCA TTGACGTGCAGGCCCGAGACCTGTGGCCTAACCCTATCCCA < 41bp 0.846809986085501 0.493396966745562 0.7032509 0.13553122 prediction 0.693619972171001 Functional Loss - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58207656 chr13:58207659 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_50222 0 0 0 0 0 exosome 0.500231643921078 0.500231643921391 0.4065018 0 hm5C_site_45574 DeepMRMD:0.4065018;iRNA_m5C:0 45575 chr12 49220851 49220851 1 + A C COAD 49220847 + 49220827 49220867 41 AGGTTTACTGGCGGGCCACGCACCACCCAGCCCCTGGCCCC AGGTTTACTGGCGGGCCACGCACCCCCCAGCCCCTGGCCCC < 41bp 0.877906229927482 0.531110057341341 0.42093632 0.30699068 prediction 0.693592345172283 Functional Loss - CACNB3 ENSG00000167535 CDS Human protein_coding chr12:49220847 chr12:49220851 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_50223 0 0 0 0 2 Ribosome 0.500231644008484 0.500231643908611 0 1.99746219564645e-10 hm5C_site_45575 DeepMRMD:0;iRNA_m5C:1.99746219564645e-10 45576 chr4 108935637 108935637 1 + G T UCEC 108935634 + 108935614 108935654 41 CTGAGCACCATAGCGACCAGCACGGATGCAGCCTCCGTTGT CTGAGCACCATAGCGACCAGCACTGATGCAGCCTCCGTTGT < 41bp 0.846786734593386 0.494480267493494 0.28137702 0.1303092 prediction 0.693573469186771 Functional Loss - HADH ENSG00000138796 CDS Human protein_coding chr4:108935634 chr4:108935637 synonymous SNV . 0 24 hm5C_associated_SNPs_50224 0 0 0 0 1 Cytosol 0.500100283542847 0.500231631207424 0 0 hm5C_site_45576 DeepMRMD:0;iRNA_m5C:0 45577 chrX 153048509 153048509 1 + G T LUAD 153048506 + 153048486 153048526 41 TGTGTGGGGGACGCTTACATCAGGCGCCTGGCTGCCGAGGC TGTGTGGGGGACGCTTACATCAGTCGCCTGGCTGCCGAGGC < 41bp 0.864933357279441 0.518189270197245 0.9192972 0.4730345 prediction 0.693488174164391 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153048506 chrX:153048509 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_50225 0 0 0 0 1 chromatin 0.500231643910056 0.500231643933622 0.8385944 0 hm5C_site_45577 DeepMRMD:0.8385944;iRNA_m5C:0 45578 chr20 35125297 35125297 1 + A C COAD 35125293 + 35125273 35125313 41 TGAGCAACTCGTCGGACAGCCTGGACAGCAGTACCCGACCG TGAGCAACTCGTCGGACAGCCTGGCCAGCAGTACCCGACCG < 41bp 0.85939414615074 0.512720721903522 0.23822802 0.12081507 prediction 0.693346848494436 Functional Loss - DLGAP4 ENSG00000080845 CDS Human protein_coding chr20:35125293 chr20:35125297 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50226 0 0 1 0 0 Cytosol 0.500241183133616 0.500426627027708 0 0 hm5C_site_45578 DeepMRMD:0;iRNA_m5C:0 45579 chrX 103294790 103294790 1 + A C rs181889222 103294786 + 103294766 103294806 41 CTCAGCCTTTCCCAGGAGGCCGTGAGTGTCATGGATTCTAT CTCAGCCTTTCCCAGGAGGCCGTGCGTGTCATGGATTCTAT < 41bp 0.848798528431447 0.502270347922857 0.42589897 0.3820434 prediction 0.693056361017181 Functional Loss - H2BFM ENSG00000101812 CDS Human protein_coding chrX:103294786 chrX:103294790 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_50227 0 0 0 0 0 unknown 0.500231642231916 0.500232204393816 0 0 hm5C_site_45579 DeepMRMD:0;iRNA_m5C:0 45580 chr12 6939612 6939612 1 + G T UCEC 6939609 + 6939589 6939629 41 GCTCTTCAGGGGAGCCTGGCCCAGATGGAGAGCTGCCGTGC GCTCTTCAGGGGAGCCTGGCCCATATGGAGAGCTGCCGTGC < 41bp 0.846443237819932 0.497731079903382 0.8216476 0.28641826 prediction 0.692886475639865 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6939609 chr12:6939612 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_50228 0 0 1 0 1 membrane 0.500231643921092 0.500231643925396 0.6432952 0 hm5C_site_45580 DeepMRMD:0.6432952;iRNA_m5C:0 45581 chr10 102743193 102743193 1 + G T SARC 102743190 + 102743170 102743210 41 GCATGGGCCTGAGCGATGGGCAGGGTGGCTACCGTGTGGGC GCATGGGCCTGAGCGATGGGCAGTGTGGCTACCGTGTGGGC < 41bp 0.855944537013008 0.509520034735814 0.91115284 0.53044635 prediction 0.69284900455439 Functional Loss - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102743190 chr10:102743193 nonsynonymous SNV 0.926 0 24 hm5C_associated_SNPs_50229 0 0 1 0 0 nucleoplasm 0.500231643921094 0.5002315913467 0.76141298 1.05148788120957e-07 hm5C_site_45581 DeepMRMD:0.76141298;iRNA_m5C:1.05148788120957e-07 45582 chr20 45801423 45801423 1 + G T SARC 45801420 + 45801400 45801440 41 AGCCAACCTGTGCCTGGGCTCTGGCGTGCACGGCGGCGTGG AGCCAACCTGTGCCTGGGCTCTGTCGTGCACGGCGGCGTGG < 41bp 0.847081259764886 0.500667290511876 0.60847276 0.07556763 prediction 0.692827938506021 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801420 chr20:45801423 nonsynonymous SNV 0.163 5 24 hm5C_associated_SNPs_50230 0 0 1 0 2 Endoplasmic reticulum 0.500231643921159 0.500231643921122 0.21694552 7.32747196252603e-14 hm5C_site_45582 DeepMRMD:0.21694552;iRNA_m5C:7.32747196252603e-14 45583 chr19 10202874 10202874 1 + G T UCEC 10202871 + 10202851 10202891 41 CTGTGGCCACCTGCTTGAGCCAGGGTGGCCTCCTGGAAGAC CTGTGGCCACCTGCTTGAGCCAGTGTGGCCTCCTGGAAGAC < 41bp 0.846403119915445 0.497524884540642 0.9320626 0.25530356 prediction 0.692806239830889 Functional Loss - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10202871 chr19:10202874 nonsynonymous SNV 0.612 1 24 hm5C_associated_SNPs_50231 0 0 1 0 0 Ribosome 0.500231635404922 0.500231643920415 0.8641252 0 hm5C_site_45583 DeepMRMD:0.8641252;iRNA_m5C:0 45584 chr6 127608601 127608601 1 + A C rs182455312 127608597 + 127608577 127608617 41 ATCTTCAGGCAGGGTACCAGCACCAGACACCTCCATTGAAG ATCTTCAGGCAGGGTACCAGCACCCGACACCTCCATTGAAG < 41bp 0.865704802417726 0.519356539845652 0.0016501546 0.0009471774 prediction 0.692696525144148 Functional Loss - RNF146 ENSG00000118518 CDS Human protein_coding chr6:127608597 chr6:127608601 synonymous SNV . 0 25 hm5C_associated_SNPs_50232 0 0 1 0 0 cytosol 0.500231643921092 0.500231600746329 0 8.63495261960168e-08 hm5C_site_45584 DeepMRMD:0;iRNA_m5C:8.63495261960168e-08 45585 chr6 33423556 33423556 1 + G T SARC 33423553 + 33423533 33423573 41 AAGATGATGATGATGAGGACCAGGGGTCAGCCACACTCTCT AAGATGATGATGATGAGGACCAGTGGTCAGCCACACTCTCT < 41bp 0.853391967761498 0.507070313491424 0.89525783 0.61958086 prediction 0.692643308540149 Functional Loss - ZBTB9 ENSG00000213588 CDS Human protein_coding chr6:33423553 chr6:33423556 nonsynonymous SNV 0.935 2 24 hm5C_associated_SNPs_50233 0 0 1 0 0 chromatin 0.500231643941866 0.50023170114439 0.55135394 0 hm5C_site_45585 DeepMRMD:0.55135394;iRNA_m5C:0 45586 chr13 113826377 113826377 1 + G T UCEC 113826374 + 113826354 113826394 41 GCTCACATGGTCCTTGTCACCAAGGTCTCCAGGTACTCACT GCTCACATGGTCCTTGTCACCAATGTCTCCAGGTACTCACT < 41bp 0.852655836300986 0.506355393093271 0.466581 0.03136331 prediction 0.692600886415429 Functional Loss - PROZ ENSG00000126231 CDS Human protein_coding chr13:113826374 chr13:113826377 nonsynonymous SNV 0.095 3 24 hm5C_associated_SNPs_50234 0 0 0 0 0 exosome 0.500231643921099 0.500297680767046 0 0 hm5C_site_45586 DeepMRMD:0;iRNA_m5C:0 45587 chrX 153496115 153496115 1 + G T THCA 153496112 + 153496092 153496132 41 GTCCTGGCATTCTGCTTCTGCTGGGGACCCTACGCCTTCTT GTCCTGGCATTCTGCTTCTGCTGTGGACCCTACGCCTTCTT < 41bp 0.857017224173651 0.510735314029931 0.8394392 0.22916842 prediction 0.69256382028744 Functional Loss - OPN1MW;OPN1MW2;OPN1MW3 ENSG00000166160 CDS Human protein_coding chrX:153496112 chrX:153496115 nonsynonymous SNV 0.643 1 24 hm5C_associated_SNPs_50235 0 0 0 0 1 unknown 0.500231644012737 0.500231645050595 0.6788784 0 hm5C_site_45587 DeepMRMD:0.6788784;iRNA_m5C:0 45588 chr1 4772161 4772161 1 + G T UCS 4772158 + 4772138 4772178 41 CAGCCAGCGCGGGTCCCGGCCCCGGTGTGGAGCCCCCGGCC CAGCCAGCGCGGGTCCCGGCCCCTGTGTGGAGCCCCCGGCC < 41bp 0.858493620082902 0.512262131686288 0.35697377 0.17436501 prediction 0.692462976793229 Functional Loss - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4772158 chr1:4772161 synonymous SNV . 0 24 hm5C_associated_SNPs_50236 0 0 0 0 0 exosome 0.500231643914051 0.500231643921443 0 0 hm5C_site_45588 DeepMRMD:0;iRNA_m5C:0 45589 chr2 242128063 242128063 1 + G T UCEC 242128060 + 242128040 242128080 41 CCACTGCCTGGGCGGGGCTCCAAGGGCCACCCCTCCCCACC CCACTGCCTGGGCGGGGCTCCAATGGCCACCCCTCCCCACC < 41bp 0.846217519661809 0.495381107438226 0.8635391 0.4157988 prediction 0.692435039323618 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242128060 chr2:242128063 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_50237 0 0 0 0 0 chromatin 0.500231643921092 0.500231643920121 0.7270782 1.94155802546447e-12 hm5C_site_45589 DeepMRMD:0.7270782;iRNA_m5C:1.94155802546447e-12 45590 chr1 206664168 206664168 1 + G T UCEC 206664165 + 206664145 206664185 41 CCTCCAGGGCTTGGCTACAACGAGGAGCAGATTCACAAGCT CCTCCAGGGCTTGGCTACAACGATGAGCAGATTCACAAGCT < 41bp 0.846192320879271 0.492206345666833 0.8702977 0.24118504 prediction 0.692384641758543 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206664165 chr1:206664168 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_50238 0 0 1 0 2 Cytosol 0.500231643893376 0.500231643921092 0.7405954 0 hm5C_site_45590 DeepMRMD:0.7405954;iRNA_m5C:0 45591 chr9 34514719 34514719 1 + A C COAD 34514715 + 34514695 34514735 41 ATACTCTTCTACTGTGTTCGCAGCAGTCACCACAGATGGGA ATACTCTTCTACTGTGTTCGCAGCCGTCACCACAGATGGGA < 41bp 0.846153619423321 0.479446599289958 0.4255141 0.5661102 prediction 0.692307238846641 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34514715 chr9:34514719 synonymous SNV . 0 25 hm5C_associated_SNPs_50239 0 0 0 0 2 unknown 0.500231644874148 0.500231659354421 0 0 hm5C_site_45591 DeepMRMD:0;iRNA_m5C:0 45592 chr12 4835988 4835988 1 + G T UCEC 4835985 + 4835965 4836005 41 ATCGCACCATCCCCGACACGCGAGACTACAGGTGGGATGAA ATCGCACCATCCCCGACACGCGATACTACAGGTGGGATGAA < 41bp 0.846099541298253 0.498107797528272 0.82423466 0.90414035 prediction 0.692199082596506 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4835985 chr12:4835988 nonsynonymous SNV 0.154 1 24 hm5C_associated_SNPs_50240 0 0 0 0 1 cytosol 0.500231645135111 0.500231643922238 0 2.42574604847334e-09 hm5C_site_45592 DeepMRMD:0;iRNA_m5C:2.42574604847334e-09 45593 chr16 30016820 30016820 1 + A C rs143249661 30016816 + 30016796 30016836 41 GCCCGGCGCCCTCCCCGTGCCAGCACACACGAGTCCAGCTT GCCCGGCGCCCTCCCCGTGCCAGCCCACACGAGTCCAGCTT < 41bp 0.857144673915575 0.511067848274269 0.14799428 0.14073011 prediction 0.692153651282613 Functional Loss - INO80E ENSG00000169592 UTR3 Human protein_coding chr16:30016816 chr16:30016820 . . 0 25 hm5C_associated_SNPs_50241 0 0 1 0 0 Cytosol 0.500231646235925 0.500231643921092 0 4.62966509573448e-09 hm5C_site_45593 DeepMRMD:0;iRNA_m5C:4.62966509573448e-09 45594 chr3 179080232 179080232 1 + A C UCEC 179080228 + 179080208 179080248 41 ACGTGTGTTTTGGCCAAAAGCAAAATGTGCCCTCTTGAGAG ACGTGTGTTTTGGCCAAAAGCAAACTGTGCCCTCTTGAGAG < 41bp 0.846064463484088 0.483348204562525 0.3052908 0.15350083 prediction 0.692128926968176 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179080228 chr3:179080232 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50242 0 0 1 0 1 Ribosome 0.500232421810312 0.500232119770693 0 6.0407923685446e-07 hm5C_site_45594 DeepMRMD:0;iRNA_m5C:6.0407923685446e-07 45595 chr18 63530072 63530072 1 + A C LUSC 63530068 + 63530048 63530088 41 GCTGACGGCGTAGCCCAGACCTGCAATGCAGAGGCCTATGT GCTGACGGCGTAGCCCAGACCTGCCATGCAGAGGCCTATGT < 41bp 0.874680709827392 0.528616729802778 0.17937553 0.091934115 prediction 0.692127960049227 Functional Loss - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63530068 chr18:63530072 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_50243 0 0 0 0 1 exosome 0.500231617160119 0.500231584496551 0 6.53271374773112e-08 hm5C_site_45595 DeepMRMD:0;iRNA_m5C:6.53271374773112e-08 45596 chr1 247587859 247587859 1 + G T LUSC 247587856 + 247587836 247587876 41 ATCCTCGGCATGTGGAGATCCTGGGTTTCTCCGAGGCCAAA ATCCTCGGCATGTGGAGATCCTGTGTTTCTCCGAGGCCAAA < 41bp 0.846048117209499 0.494182752408968 0.75753593 0.03534749 prediction 0.692096234418999 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247587856 chr1:247587859 nonsynonymous SNV 0.963 4 24 hm5C_associated_SNPs_50244 0 0 0 0 0 Nucleus 0.500231643887254 0.50023164392114 0.51507186 0 hm5C_site_45596 DeepMRMD:0.51507186;iRNA_m5C:0 45597 chr9 33295160 33295160 1 + A C STAD 33295156 + 33295136 33295176 41 GGAAGTGGAGGGGGCCAGGCCACGACCAGGCAGAAATCCAC GGAAGTGGAGGGGGCCAGGCCACGCCCAGGCAGAAATCCAC < 41bp 0.846008907040671 0.466256740424486 0.32279736 0.22678658 prediction 0.692017814081342 Functional Loss - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33295156 chr9:33295160 synonymous SNV . 0 25 hm5C_associated_SNPs_50245 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_45597 DeepMRMD:0;iRNA_m5C:0 45598 chr7 2617950 2617950 1 + G T LUSC 2617947 + 2617927 2617967 41 CGCCTGGAGGAGGAAAACAGCAGGAAGGACCGGCAGATAGA CGCCTGGAGGAGGAAAACAGCAGTAAGGACCGGCAGATAGA < 41bp 0.852687293121044 0.506707530627369 0.876521 0.55314755 prediction 0.691959524987351 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2617947 chr7:2617950 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_50246 0 0 0 0 2 chromatin 0.500231644852068 0.500231643773763 0.6467469 2.15660911351279e-09 hm5C_site_45598 DeepMRMD:0.6467469;iRNA_m5C:2.15660911351279e-09 45599 chr1 151491244 151491244 1 + G T GBM 151491241 + 151491221 151491261 41 GACTCCTTTGGGGTCCAAATCAAGGGGGCCAATGACCAAGG GACTCCTTTGGGGTCCAAATCAATGGGGCCAATGACCAAGG < 41bp 0.845857268127085 0.490113634013299 0.94376504 0.34971297 prediction 0.69171453625417 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151491241 chr1:151491244 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_50247 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0.88753008 0 hm5C_site_45599 DeepMRMD:0.88753008;iRNA_m5C:0 45600 chr15 40751136 40751136 1 + A C SKCM 40751132 + 40751112 40751152 41 ATCCCCACCGCAGCCGTGACCGTGATCGTGCTACTGGGGGC ATCCCCACCGCAGCCGTGACCGTGCTCGTGCTACTGGGGGC < 41bp 0.855150220864741 0.509358163569078 0.3748845 0.30747154 prediction 0.691584114591326 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40751132 chr15:40751136 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_50248 0 0 1 0 0 chromatin 0.500231600282411 0.500231519980802 0 1.60603218279931e-07 hm5C_site_45600 DeepMRMD:0;iRNA_m5C:1.60603218279931e-07 45601 chr1 15789237 15789237 1 + G T OV 15789234 + 15789214 15789254 41 CCCCTTTCTCCCAGCTCCTCCAGGACCTACCGCGTGGGGCT CCCCTTTCTCCCAGCTCCTCCAGTACCTACCGCGTGGGGCT < 41bp 0.845778338476321 0.49151675812003 0.6612047 0.12926456 prediction 0.691556676952642 Functional Loss - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15789234 chr1:15789237 nonsynonymous SNV 0.010 1 24 hm5C_associated_SNPs_50249 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.3224094 0 hm5C_site_45601 DeepMRMD:0.3224094;iRNA_m5C:0 45602 chr1 177249868 177249868 1 + A C LUAD 177249864 + 177249844 177249884 41 ACCTGGAGCTAAAGTACCTGCTGCAGAAGCAGGATAGCCGC ACCTGGAGCTAAAGTACCTGCTGCCGAAGCAGGATAGCCGC < 41bp 0.845773374190225 0.471900018317054 0.24215686 0.15983847 prediction 0.691546748380451 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177249864 chr1:177249868 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50250 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_45602 DeepMRMD:0;iRNA_m5C:0 45603 chr6 43220491 43220491 1 + G T LUSC 43220488 + 43220468 43220508 41 TCTTCATAGCTGAAAAAGATCGGGGGCGGGGGCTTTGGTGA TCTTCATAGCTGAAAAAGATCGGTGGCGGGGGCTTTGGTGA < 41bp 0.845735283161911 0.490485143014858 0.9215497 0.68010676 prediction 0.691470566323822 Functional Loss - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43220488 chr6:43220491 synonymous SNV . 0 24 hm5C_associated_SNPs_50251 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.48288588 0 hm5C_site_45603 DeepMRMD:0.48288588;iRNA_m5C:0 45604 chr16 29708661 29708661 1 + G T GBM 29708658 + 29708638 29708678 41 TCTCCATGGGGATGCTGACCCAGGCGGCCCCAGCCCTTGAT TCTCCATGGGGATGCTGACCCAGTCGGCCCCAGCCCTTGAT < 41bp 0.850285132808975 0.504577525595668 0.8963639 0.07751739 prediction 0.691415214426613 Functional Loss - QPRT ENSG00000103485 CDS Human protein_coding chr16:29708658 chr16:29708661 nonsynonymous SNV 0.955 1 24 hm5C_associated_SNPs_50252 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.7927278 0 hm5C_site_45604 DeepMRMD:0.7927278;iRNA_m5C:0 45605 chr18 61652467 61652467 1 + G T LUSC 61652464 + 61652444 61652484 41 ATTCTGCTTCCCGATGACAACACGGACCTCGCCGTGGTAAG ATTCTGCTTCCCGATGACAACACTGACCTCGCCGTGGTAAG < 41bp 0.847405865955085 0.501730691876077 0.5294526 0.22618133 prediction 0.691350348158017 Functional Loss - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61652464 chr18:61652467 synonymous SNV . 0 24 hm5C_associated_SNPs_50253 0 0 0 0 1 nucleus 0.500231643921092 0.500231643625316 0.0589052000000001 5.91552140605245e-10 hm5C_site_45605 DeepMRMD:0.0589052000000001;iRNA_m5C:5.91552140605245e-10 45606 chr19 11943687 11943687 1 + A C rs527740574 11943683 + 11943663 11943703 41 TTTGAATACGTGGTAGGACACACAATGGAGAGAAGCCCTAT TTTGAATACGTGGTAGGACACACACTGGAGAGAAGCCCTAT < 41bp 0.847391565219949 0.501723038237161 0.06446338 0.032483906 prediction 0.691337053965575 Functional Loss - ZNF440 ENSG00000171295 CDS Human protein_coding chr19:11943683 chr19:11943687 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_50254 0 0 0 0 0 Nucleus 0.500231643798129 0.500231524458285 0 2.38679688679966e-07 hm5C_site_45606 DeepMRMD:0;iRNA_m5C:2.38679688679966e-07 45607 chr7 106508129 106508129 1 + G T LUAD 106508126 + 106508106 106508146 41 TCCATGGAGCTCATCCCCATCGAGTTCGTGCTGCCCACCAG TCCATGGAGCTCATCCCCATCGATTTCGTGCTGCCCACCAG < 41bp 0.845621270800027 0.493736784277633 0.36958152 0.116205126 prediction 0.691242541600054 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508126 chr7:106508129 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_50255 0 0 0 0 0 Cytosol 0.500231648855137 0.500231645218548 0 7.27317894799739e-09 hm5C_site_45607 DeepMRMD:0;iRNA_m5C:7.27317894799739e-09 45608 chr19 51729262 51729262 1 + A C LUSC 51729258 + 51729238 51729278 41 ACCCCACGGCCCCAGGACCACGGCACCAACCTGACCTGTCA ACCCCACGGCCCCAGGACCACGGCCCCAACCTGACCTGTCA < 41bp 0.854864976133095 0.50929389112598 0.54747695 0.58757126 prediction 0.69114217001423 Functional Loss - CD33 ENSG00000105383 CDS Human protein_coding chr19:51729258 chr19:51729262 nonsynonymous SNV 0.483 3 25 hm5C_associated_SNPs_50256 0 0 1 0 1 exosome 0.500223657434448 0.500231643921098 0 0 hm5C_site_45608 DeepMRMD:0;iRNA_m5C:0 45609 chrX 23018308 23018308 1 + G T LUAD 23018305 + 23018285 23018325 41 CCATCAGGGACCGAGAGCAGCAGGCTCCCGTGAACCACCAC CCATCAGGGACCGAGAGCAGCAGTCTCCCGTGAACCACCAC < 41bp 0.846541546323461 0.501028517720653 0.6795153 0.28177956 prediction 0.691026057205616 Functional Loss - DDX53 ENSG00000184735 CDS Human protein_coding chrX:23018305 chrX:23018308 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_50257 0 0 0 0 0 unknown 0.500162805730165 0.500227190362287 0.3590306 0 hm5C_site_45609 DeepMRMD:0.3590306;iRNA_m5C:0 45610 chr8 144126093 144126093 1 + G T BRCA 144126090 + 144126070 144126110 41 TGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAAGAC TGCCCTCTGCCCTGGCACCCCAGTGACTCACTGCCAAAGAC < 41bp 0.845496358678071 0.490919120393146 0.8952721 0.3441623 prediction 0.690992717356141 Functional Loss - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144126090 chr8:144126093 stopgain . 0 24 hm5C_associated_SNPs_50258 0 0 0 4 1 unknown 0.500231643921092 0.500231582970886 0.7905442 1.21900412208831e-07 hm5C_site_45610 DeepMRMD:0.7905442;iRNA_m5C:1.21900412208831e-07 45611 chr6 41029364 41029364 1 + G T UCEC 41029361 + 41029341 41029381 41 ATCAAAACCCTTAGCAAGACCAAGAACCTGCGTCTGCTCAT ATCAAAACCCTTAGCAAGACCAATAACCTGCGTCTGCTCAT < 41bp 0.851673697130744 0.506197317634894 0.1592856 0.029264122 prediction 0.690952758991701 Functional Loss - APOBEC2 ENSG00000124701 CDS Human protein_coding chr6:41029361 chr6:41029364 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50259 0 0 0 0 0 chromatin 0.500231632501476 0.50023164715443 0 0 hm5C_site_45611 DeepMRMD:0;iRNA_m5C:0 45612 chr11 94731766 94731766 1 + A C BLCA 94731762 + 94731742 94731782 41 CTCTTCACTCCCACGCCGATCTGCAGTTAGTGGCACTGCTA CTCTTCACTCCCACGCCGATCTGCCGTTAGTGGCACTGCTA < 41bp 0.845451973313262 0.485576804885935 0.4019009 0.3188616 prediction 0.690903946626525 Functional Loss - KDM4D ENSG00000186280 CDS Human protein_coding chr11:94731762 chr11:94731766 synonymous SNV . 0 25 hm5C_associated_SNPs_50260 0 0 0 0 0 chromatin 0.500231643854394 0.500231638453301 0 1.08021860345531e-08 hm5C_site_45612 DeepMRMD:0;iRNA_m5C:1.08021860345531e-08 45613 chr16 27078867 27078867 1 + A C rs12446622 27078863 + 27078843 27078883 41 TTGGGCAGCAGTGCCCTCACCTACAAGGTGAGCAGCGGGCT TTGGGCAGCAGTGCCCTCACCTACCAGGTGAGCAGCGGGCT < 41bp 0.845423348918719 0.49756737635705 0.4242867 0.13970187 prediction 0.690846697837438 Functional Loss - C16orf82 ENSG00000234186;ENSG00000261482 ncRNA_exonic Human other chr16:27078863 chr16:27078867 . . 0 25 hm5C_associated_SNPs_50261 0 0 0 0 0 unknown 0.500231643937157 0.500231643921092 0 3.21289661542323e-11 hm5C_site_45613 DeepMRMD:0;iRNA_m5C:3.21289661542323e-11 45614 chrX 55247851 55247851 1 + A C rs759965291 55247847 + 55247827 55247867 41 TGTAACAAGATCCCAATCCTCAGAAAGAGGAAATGACCAAG TGTAACAAGATCCCAATCCTCAGACAGAGGAAATGACCAAG < 41bp 0.859614476811928 0.514193971784018 0.36425743 0.27688345 prediction 0.690841010055819 Functional Loss - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55247847 chrX:55247851 nonsynonymous SNV 0.017 0 25 hm5C_associated_SNPs_50262 0 0 0 0 2 exosome 0.500231643921093 0.500231641652285 0 4.53761472840597e-09 hm5C_site_45614 DeepMRMD:0;iRNA_m5C:4.53761472840597e-09 45615 chrX 152226684 152226684 1 + G T GBM 152226681 + 152226661 152226701 41 TGTGGGGAAGACGGCCACATCAGGGTACAGTGCATCAACCC TGTGGGGAAGACGGCCACATCAGTGTACAGTGCATCAACCC < 41bp 0.855476086518414 0.510107365059465 0.9328966 0.15901342 prediction 0.690737442917899 Functional Loss - PNMA3 ENSG00000183837 CDS Human protein_coding chrX:152226681 chrX:152226684 nonsynonymous SNV 0.108 0 24 hm5C_associated_SNPs_50263 0 0 0 0 0 exosome 0.500231643922005 0.500231642658798 0.8657932 2.52641263465136e-09 hm5C_site_45615 DeepMRMD:0.8657932;iRNA_m5C:2.52641263465136e-09 45616 chr1 247587612 247587612 1 + G T UCEC 247587609 + 247587589 247587629 41 GACCCAAACCCACCCATCCACAAGATCGTGAGAAAACCCTC GACCCAAACCCACCCATCCACAATATCGTGAGAAAACCCTC < 41bp 0.850184888211139 0.504826753962391 0.04010263 0.010829002 prediction 0.690716268497495 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247587609 chr1:247587612 nonsynonymous SNV 0.460 1 24 hm5C_associated_SNPs_50264 0 0 0 0 0 Nucleus 0.500231643885298 0.500231645982107 0 0 hm5C_site_45616 DeepMRMD:0;iRNA_m5C:0 45617 chr12 52308264 52308264 1 + G T SARC 52308261 + 52308241 52308281 41 AAGTGTGGCGGGGCTTGTGGCACGGTGAGAGTGTGGCCGTC AAGTGTGGCGGGGCTTGTGGCACTGTGAGAGTGTGGCCGTC < 41bp 0.858474199060884 0.513123718819567 0.73322505 0.2876538 prediction 0.690700960482634 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52308261 chr12:52308264 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_50265 0 0 0 0 1 Endoplasmic reticulum 0.500231643911593 0.500206297874297 0.4664501 5.06920745926287e-05 hm5C_site_45617 DeepMRMD:0.4664501;iRNA_m5C:5.06920745926287e-05 45618 chr14 102918939 102918939 1 + G T LUAD 102918936 + 102918916 102918956 41 AGCTGCCCCACGGGCATGCACTGGACCAGGCTGGACCTCTC AGCTGCCCCACGGGCATGCACTGTACCAGGCTGGACCTCTC < 41bp 0.84581583037119 0.500526154717459 0.8509744 0.22620061 prediction 0.690579351307463 Functional Loss - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102918936 chr14:102918939 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_50266 0 0 1 0 1 Cytosol 0.500236248013687 0.500231643931138 0.7019488 9.20816509797362e-06 hm5C_site_45618 DeepMRMD:0.7019488;iRNA_m5C:9.20816509797362e-06 45619 chr2 233322749 233322749 1 + G T GBM 233322746 + 233322726 233322766 41 ACACGAAATATGAGATCCACCGAGACCCCACACTGGACCCC ACACGAAATATGAGATCCACCGATACCCCACACTGGACCCC < 41bp 0.847373292001853 0.502107233794798 0.16750902 0.020171493 prediction 0.69053211641411 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322746 chr2:233322749 nonsynonymous SNV 0.007 5 24 hm5C_associated_SNPs_50267 0 0 1 0 1 Cytosol 0.500231643921093 0.500231643922313 0 0 hm5C_site_45619 DeepMRMD:0;iRNA_m5C:0 45620 chr19 56539603 56539603 1 + G T LUAD 56539600 + 56539580 56539620 41 GTGAAGCAGAAGCTTCTGCACTGGGTCTCTCTGTTGGGTCA GTGAAGCAGAAGCTTCTGCACTGTGTCTCTCTGTTGGGTCA < 41bp 0.845206417410905 0.488023452903403 0.37499726 0.020703405 prediction 0.69041283482181 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56539600 chr19:56539603 nonsynonymous SNV 0.030 1 24 hm5C_associated_SNPs_50268 0 0 0 0 0 unknown 0.500231643926329 0.500177595648746 0 0.000108096555166304 hm5C_site_45620 DeepMRMD:0;iRNA_m5C:0.000108096555166304 45621 chr2 238990744 238990744 1 + G T LUSC 238990741 + 238990721 238990761 41 GAACCAGGAACGGGTGGCAGCTGGGCTACCTCCCATCCTCG GAACCAGGAACGGGTGGCAGCTGTGCTACCTCCCATCCTCG < 41bp 0.845203035198269 0.481777492478625 0.8678849 0.21555248 prediction 0.690406070396538 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990741 chr2:238990744 nonsynonymous SNV 0.103 1 24 hm5C_associated_SNPs_50269 0 0 1 0 1 Ribosome 0.50023164392109 0.500231626643706 0.7357698 3.45547692681691e-08 hm5C_site_45621 DeepMRMD:0.7357698;iRNA_m5C:3.45547692681691e-08 45622 chr10 46999887 46999887 1 + G T STAD 46999884 + 46999864 46999904 41 CCCGCTGTCAGCCCAGGATGCTGGTGTGCAGGCGGCCCCAG CCCGCTGTCAGCCCAGGATGCTGTTGTGCAGGCGGCCCCAG < 41bp 0.85664719253947 0.511448616751582 0.799139 0.32887298 prediction 0.690397151575776 Functional Loss - GPRIN2 ENSG00000204175 CDS Human protein_coding chr10:46999884 chr10:46999887 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50270 0 0 0 0 0 exosome 0.500231643918905 0.500231643923373 0.598278 0 hm5C_site_45622 DeepMRMD:0.598278;iRNA_m5C:0 45623 chr19 5657268 5657268 1 + A C HNSC 5657264 + 5657244 5657284 41 TGAACTAGGCTTCCAAAAGCCAGGATCGCAAATCAGCCAGC TGAACTAGGCTTCCAAAAGCCAGGCTCGCAAATCAGCCAGC < 41bp 0.84513359568604 0.480586436916628 0.8458047 0.80961406 prediction 0.690267191372079 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5657264 chr19:5657268 nonsynonymous SNV 0.947 4 25 hm5C_associated_SNPs_50271 0 0 1 0 2 chromatin 0.500231377225894 0.500229198517845 0.0723812799999999 4.35741609772222e-06 hm5C_site_45623 DeepMRMD:0.0723812799999999;iRNA_m5C:4.35741609772222e-06 45624 chr16 19838372 19838372 1 + G T READ 19838369 + 19838349 19838389 41 TTCGCTGTGATCCTGAGATTCAAGAACTGCGTCAGTGGCAG TTCGCTGTGATCCTGAGATTCAATAACTGCGTCAGTGGCAG < 41bp 0.845085122429293 0.499907117983652 0.35195154 0.22474617 prediction 0.690170244858586 Functional Loss - IQCK ENSG00000174628 CDS Human protein_coding chr16:19838369 chr16:19838372 stopgain 0.868 1 24 hm5C_associated_SNPs_50272 0 0 0 0 2 Nucleus 0.500231643907993 0.500231687347646 0 0 hm5C_site_45624 DeepMRMD:0;iRNA_m5C:0 45625 chr19 48342701 48342701 1 + G T LUAD 48342698 + 48342678 48342718 41 GAGGAAGGCGGGCACGTCCCCAAGACCCTCCACAGATGTGT GAGGAAGGCGGGCACGTCCCCAATACCCTCCACAGATGTGT < 41bp 0.845036762683781 0.4933300155174 0.124925196 0.013686687 prediction 0.690073525367562 Functional Loss - CRX ENSG00000105392 CDS Human protein_coding chr19:48342698 chr19:48342701 nonsynonymous SNV 0.965 2 24 hm5C_associated_SNPs_50273 0 0 0 0 0 Nucleus 0.500231643921092 0.50023164392109 0 5.10702591327572e-15 hm5C_site_45625 DeepMRMD:0;iRNA_m5C:5.10702591327572e-15 45626 chr16 68713832 68713832 1 + G T LUAD 68713829 + 68713809 68713849 41 GACCTCATGTTCACCATTCACCGGAGCACAGGCACCATCAG GACCTCATGTTCACCATTCACCGTAGCACAGGCACCATCAG < 41bp 0.844997015177853 0.486947505384464 0.5083427 0.02967447 prediction 0.689994030355705 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68713829 chr16:68713832 synonymous SNV . 0 24 hm5C_associated_SNPs_50274 0 0 0 0 1 Endoplasmic reticulum 0.50023672007418 0.500231667144117 0.0166854000000001 1.01058601256199e-05 hm5C_site_45626 DeepMRMD:0.0166854000000001;iRNA_m5C:1.01058601256199e-05 45627 chr3 137483687 137483687 1 + G T UCEC 137483684 + 137483664 137483704 41 ACGCCTTCATGGTATGGTCCCGGGGCCAGCGGCGCAAGATG ACGCCTTCATGGTATGGTCCCGGTGCCAGCGGCGCAAGATG < 41bp 0.851102771333808 0.506238792447666 0.89768636 0.32475126 prediction 0.689727957772284 Functional Loss - SOX14 ENSG00000168875 CDS Human protein_coding chr3:137483684 chr3:137483687 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_50275 0 0 0 0 0 exosome 0.500231643921033 0.500231642458253 0.79537272 2.92555979442e-09 hm5C_site_45627 DeepMRMD:0.79537272;iRNA_m5C:2.92555979442e-09 45628 chr16 4745126 4745126 1 + A C LUSC 4745122 + 4745102 4745142 41 GAAGCTGGTTGAGGCCCTGGCTGCAGCCACCGAGAAGCAGA GAAGCTGGTTGAGGCCCTGGCTGCCGCCACCGAGAAGCAGA < 41bp 0.844844708900347 0.499195592240333 0.14382651 0.059757203 prediction 0.689689417800694 Functional Loss - NUDT16L1 ENSG00000168101 CDS Human protein_coding chr16:4745122 chr16:4745126 synonymous SNV . 0 25 hm5C_associated_SNPs_50276 0 0 1 0 0 Ribosome 0.500231643886802 0.500231574994422 0 1.37784760045889e-07 hm5C_site_45628 DeepMRMD:0;iRNA_m5C:1.37784760045889e-07 45629 chr11 5411357 5411357 1 + A C ESCA 5411353 + 5411333 5411373 41 CACAGTAGCAGGCCTGGCCTCCCAAGAGGAGCAGCGCCGTG CACAGTAGCAGGCCTGGCCTCCCACGAGGAGCAGCGCCGTG < 41bp 0.844761531056172 0.492779974904732 0.10548037 0.04594621 prediction 0.689523062112345 Functional Loss - OR51M1 ENSG00000184698 CDS Human protein_coding chr11:5411353 chr11:5411357 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_50277 0 0 0 0 0 nucleoplasm 0.500231643921089 0.500231643921049 0 7.99360577730113e-14 hm5C_site_45629 DeepMRMD:0;iRNA_m5C:7.99360577730113e-14 45630 chr1 205238475 205238475 1 + A C STAD 205238471 + 205238451 205238491 41 AGGACGTGCTGCGGGACATGCAGCAGGGGCTGAAGGACGTG AGGACGTGCTGCGGGACATGCAGCCGGGGCTGAAGGACGTG < 41bp 0.8673728241334 0.522650955126728 0.43176472 0.3882978 prediction 0.689443738013343 Functional Loss - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205238471 chr1:205238475 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_50278 0 0 0 0 0 chromatin 0.500231643915498 0.50023164392111 0 0 hm5C_site_45630 DeepMRMD:0;iRNA_m5C:0 45631 chr19 3119349 3119349 1 + A C PAAD 3119345 + 3119325 3119365 41 CGCACCTGGTGGACTACTTCCCCGAGTTCGATGGTGCGCCG CGCACCTGGTGGACTACTTCCCCGCGTTCGATGGTGCGCCG < 41bp 0.860626082735287 0.515938132178469 0.46492568 0.18699628 prediction 0.689375901113637 Functional Loss - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3119345 chr19:3119349 nonsynonymous SNV 0.861 2 25 hm5C_associated_SNPs_50279 0 0 1 0 1 Cytosol 0.50023113126793 0.500231632112509 0 0 hm5C_site_45631 DeepMRMD:0;iRNA_m5C:0 45632 chr9 97062614 97062614 1 + G T LUSC 97062611 + 97062591 97062631 41 AAGCACCAGAGGACACACACCGGGGAGAAGCCATACCTGTG AAGCACCAGAGGACACACACCGGTGAGAAGCCATACCTGTG < 41bp 0.844685607027703 0.494270579495144 0.90087855 0.4788021 prediction 0.689371214055406 Functional Loss - ZNF169 ENSG00000175787 CDS Human protein_coding chr9:97062611 chr9:97062614 synonymous SNV . 0 24 hm5C_associated_SNPs_50280 0 0 0 0 0 Cytosol 0.500231619187797 0.500231644870702 0.8017571 0 hm5C_site_45632 DeepMRMD:0.8017571;iRNA_m5C:0 45633 chr19 1528373 1528373 1 + G T UCEC 1528370 + 1528350 1528390 41 TCTTCGCCATACCCCCGCCTCTGGGCAGGATCTTCCGGAAG TCTTCGCCATACCCCCGCCTCTGTGCAGGATCTTCCGGAAG < 41bp 0.859794610547034 0.515126042419116 0.2057159 0.12143201 prediction 0.689337136255837 Functional Loss - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1528370 chr19:1528373 nonsynonymous SNV 0.331 2 24 hm5C_associated_SNPs_50281 0 0 0 0 1 exosome 0.500231643910571 0.500231643921095 0 0 hm5C_site_45633 DeepMRMD:0;iRNA_m5C:0 45634 chr10 48371464 48371464 1 + A C LUAD 48371460 + 48371440 48371480 41 CGGGGCCTGACCCACATTCTCAGAAGCGGAGAGAAGAGGCC CGGGGCCTGACCCACATTCTCAGACGCGGAGAGAAGAGGCC < 41bp 0.859504875793846 0.514850722707455 0.92499125 0.9229805 prediction 0.689308306172782 Functional Loss - ZNF488 ENSG00000165388 CDS Human other chr10:48371460 chr10:48371464 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_50282 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.00402150000000012 0 hm5C_site_45634 DeepMRMD:0.00402150000000012;iRNA_m5C:0 45635 chr20 30408203 30408203 1 + G T COAD 30408200 + 30408180 30408220 41 GCGACACCTGAGACCAGCGTCAAGAAGCCCAAGGCTGAGCA GCGACACCTGAGACCAGCGTCAATAAGCCCAAGGCTGAGCA < 41bp 0.844630741815998 0.493950718491985 0.7694957 0.28419405 prediction 0.689261483631997 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30408200 chr20:30408203 nonsynonymous SNV 0.236 1 24 hm5C_associated_SNPs_50283 0 0 0 0 0 exosome 0.500231643921093 0.500231644715761 0.5389914 0 hm5C_site_45635 DeepMRMD:0.5389914;iRNA_m5C:0 45636 chr3 113784218 113784218 1 + G T UCEC 113784215 + 113784195 113784235 41 CCAGGCTGCCTTCTGTATACCAAGACTGGCTCCGCCCCACA CCAGGCTGCCTTCTGTATACCAATACTGGCTCCGCCCCACA < 41bp 0.847560331111547 0.502953189338751 0.14996341 0.11704701 prediction 0.689214283545592 Functional Loss - QTRT2 ENSG00000151576 CDS Human protein_coding chr3:113784215 chr3:113784218 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_50284 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_45636 DeepMRMD:0;iRNA_m5C:0 45637 chr1 150468986 150468986 1 + G T PRAD 150468983 + 150468963 150469003 41 ATCATCCTTATGGAGGTCTTCAGGGGCCCCAGAGACACTGC ATCATCCTTATGGAGGTCTTCAGTGGCCCCAGAGACACTGC < 41bp 0.858143848790167 0.513558860257211 0.94686997 0.39376116 prediction 0.689169977065912 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150468983 chr1:150468986 nonsynonymous SNV 0.114 0 24 hm5C_associated_SNPs_50285 0 0 0 2 1 Ribosome 0.500231643916373 0.500231643921092 0.89373994 0 hm5C_site_45637 DeepMRMD:0.89373994;iRNA_m5C:0 45638 chr2 68882252 68882252 1 + G T PRAD 68882249 + 68882229 68882269 41 TTTATCTTTGGCATAGAATTCGTGGGCCCCGTGGTCACCAT TTTATCTTTGGCATAGAATTCGTTGGCCCCGTGGTCACCAT < 41bp 0.84456563221655 0.498078599503794 0.34611002 0.10381985 prediction 0.6891312644331 Functional Loss - PROKR1 ENSG00000169618 CDS Human protein_coding chr2:68882249 chr2:68882252 synonymous SNV . 0 24 hm5C_associated_SNPs_50286 0 0 0 0 0 exosome 0.500231643922539 0.500231643913839 0 1.74003034203452e-11 hm5C_site_45638 DeepMRMD:0;iRNA_m5C:1.74003034203452e-11 45639 chr17 30814962 30814962 1 + A C rs201546266 30814958 + 30814938 30814978 41 GCCCCCACCGGCCCAGCCGCCTGCACCCCCGGCCAGCCAGC GCCCCCACCGGCCCAGCCGCCTGCCCCCCCGGCCAGCCAGC < 41bp 0.869944746341571 0.525399488863034 0.33400324 0.2702843 prediction 0.689090514957073 Functional Loss - CDK5R1 ENSG00000176749 CDS Human protein_coding chr17:30814958 chr17:30814962 synonymous SNV . 0 25 hm5C_associated_SNPs_50287 0 0 0 0 0 chromatin 0.500231642810093 0.500231643920487 0 0 hm5C_site_45639 DeepMRMD:0;iRNA_m5C:0 45640 chr21 43524099 43524099 1 + C A UCEC 43524102 - 43524082 43524122 41 TGGAGATGCCCATGGGAAACCCGGGGTCCTGCACGGTGAGC TGGAGATGCCCATGGGAAACCCGTGGTCCTGCACGGTGAGC < 41bp 0.844523735037473 0.493335367189203 0.90062046 0.3022796 prediction 0.689047470074945 Functional Loss - UMODL1 ENSG00000177398;ENSG00000184385 CDS Human other chr21:43524102 chr21:43524099 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_50288 0 0 0 0 1 exosome 0.50023164029428 0.500231643925063 0.80124092 0 hm5C_site_45640 DeepMRMD:0.80124092;iRNA_m5C:0 45641 chr12 49220793 49220793 1 + G T BLCA 49220790 + 49220770 49220810 41 TGATTCTGGATGAGAACCAGCTGGAGGATGCCTGTGAGCAC TGATTCTGGATGAGAACCAGCTGTAGGATGCCTGTGAGCAC < 41bp 0.846290416968933 0.50178808787263 0.18152103 0.123824686 prediction 0.689004658192607 Functional Loss - CACNB3 ENSG00000167535 CDS Human protein_coding chr12:49220790 chr12:49220793 stopgain 0.996 1 24 hm5C_associated_SNPs_50289 0 0 1 0 1 Ribosome 0.500231630699586 0.500231643935131 0 0 hm5C_site_45641 DeepMRMD:0;iRNA_m5C:0 45642 chr11 94731271 94731271 1 + G T LGG 94731268 + 94731248 94731288 41 TGTGGGGCCTTCCTGCGGCACAAGGTGGCCCTCATCTCGCC TGTGGGGCCTTCCTGCGGCACAATGTGGCCCTCATCTCGCC < 41bp 0.844499502595132 0.477882521993006 0.4835586 0.17964384 prediction 0.688999005190263 Functional Loss - KDM4D ENSG00000186280 CDS Human protein_coding chr11:94731268 chr11:94731271 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50290 0 0 0 0 0 chromatin 0.500231643921092 0.500231643920827 0 5.31130694980675e-13 hm5C_site_45642 DeepMRMD:0;iRNA_m5C:5.31130694980675e-13 45643 chr1 161089367 161089367 1 + A C UCEC 161089363 + 161089343 161089383 41 GCCAAGACTGGGAGCAGACTCAGAAAATCTACAATTGTCAC GCCAAGACTGGGAGCAGACTCAGACAATCTACAATTGTCAC < 41bp 0.872513683970171 0.528064711448283 0.31385767 0.26315248 prediction 0.688897945043776 Functional Loss - NIT1 ENSG00000158793 CDS Human protein_coding chr1:161089363 chr1:161089367 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50291 0 0 1 0 2 nucleolus 0.500231643763503 0.500231122617794 0 1.04229141917322e-06 hm5C_site_45643 DeepMRMD:0;iRNA_m5C:1.04229141917322e-06 45644 chrX 19371255 19371255 1 + G T UCEC 19371252 + 19371232 19371272 41 GGATCGATGCACATGTATGCCAAGAACTTCTACGGGGGCAA GGATCGATGCACATGTATGCCAATAACTTCTACGGGGGCAA < 41bp 0.852650602910635 0.508217334339501 0.16568989 0.14317349 prediction 0.688866537142268 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19371252 chrX:19371255 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50292 0 0 1 0 2 Ribosome 0.500231643921097 0.500231643925594 0 0 hm5C_site_45644 DeepMRMD:0;iRNA_m5C:0 45645 chr16 50667513 50667513 1 + G T STAD 50667510 + 50667490 50667530 41 ACCGAGCCAAGGAGAGCCAGCAGGGCTGCCGGGGCCTGCAG ACCGAGCCAAGGAGAGCCAGCAGTGCTGCCGGGGCCTGCAG < 41bp 0.848699550311908 0.504275661742508 0.9186693 0.38203698 prediction 0.688847777138799 Functional Loss - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50667510 chr16:50667513 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_50293 0 0 0 0 0 chromatin 0.500231643883559 0.500231643921095 0.8373386 0 hm5C_site_45645 DeepMRMD:0.8373386;iRNA_m5C:0 45646 chr13 111371715 111371715 1 + G T SARC 111371712 + 111371692 111371732 41 GGCGACGAGAAGATCCAGATCGTGAGCCAGATGGTGGAGCT GGCGACGAGAAGATCCAGATCGTTAGCCAGATGGTGGAGCT < 41bp 0.844416020943481 0.499684342748059 0.7106194 0.5329101 prediction 0.688832041886961 Functional Loss - ING1 ENSG00000153487 CDS Human protein_coding chr13:111371712 chr13:111371715 synonymous SNV . 0 24 hm5C_associated_SNPs_50294 0 0 1 0 0 Endoplasmic reticulum 0.50023164389023 0.500231643692345 0.3554186 3.95770083372327e-10 hm5C_site_45646 DeepMRMD:0.3554186;iRNA_m5C:3.95770083372327e-10 45647 chr19 15852657 15852657 1 + G T CESC 15852654 + 15852634 15852674 41 TCTTGTGGCCTGGACCTGGGCTGGTGGCTCGGTCATGGGGA TCTTGTGGCCTGGACCTGGGCTGTTGGCTCGGTCATGGGGA < 41bp 0.847293832395426 0.502896894312071 0.36820704 0.1906529 prediction 0.688793876166711 Functional Loss - OR10H3 ENSG00000171936 CDS Human protein_coding chr19:15852654 chr19:15852657 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_50295 0 0 0 0 0 unknown 0.500231585759239 0.500231643918766 0 0 hm5C_site_45647 DeepMRMD:0;iRNA_m5C:0 45648 chr1 28861844 28861844 1 + G T LUAD 28861841 + 28861821 28861861 41 GCTGCGGGGAACAGGGCCAGCTAGGCCGTGTGCCTGAGTTA GCTGCGGGGAACAGGGCCAGCTATGCCGTGTGCCTGAGTTA < 41bp 0.844379666676733 0.490585417862285 0.24151722 0.24793682 prediction 0.688759333353465 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861841 chr1:28861844 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_50296 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_45648 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 45649 chr2 155555327 155555327 1 + G T LUSC 155555324 + 155555304 155555344 41 GGAAATTTGGGGACGATTATCAGGTAGTGACCACATCGTCC GGAAATTTGGGGACGATTATCAGTTAGTGACCACATCGTCC < 41bp 0.844349923301416 0.497935791589684 0.9189764 0.27151018 prediction 0.688699846602833 Functional Loss - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155555324 chr2:155555327 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50297 0 0 0 0 0 exosome 0.500231289619621 0.500231643921092 0.8379528 0 hm5C_site_45649 DeepMRMD:0.8379528;iRNA_m5C:0 45650 chr19 6897289 6897289 1 + G T LUSC 6897286 + 6897266 6897306 41 CACTGGAAATGACTGGGTCCCAGGAAAGCCGGGCAATTTCT CACTGGAAATGACTGGGTCCCAGTAAAGCCGGGCAATTTCT < 41bp 0.844324402837904 0.499309491470847 0.88743633 0.20868883 prediction 0.688648805675809 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6897286 chr19:6897289 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_50298 0 0 0 0 1 exosome 0.500231643920908 0.500231643921092 0.77487266 0 hm5C_site_45650 DeepMRMD:0.77487266;iRNA_m5C:0 45651 chr7 142749846 142749846 1 + G T GBM 142749843 + 142749823 142749863 41 GCTATGGCACTCTGATGAGCCGGGCTATGTGTGTCCAGCTG GCTATGGCACTCTGATGAGCCGGTCTATGTGTGTCCAGCTG < 41bp 0.849573832559735 0.505312795733309 0.57236665 0.3701194 prediction 0.688522073652851 Functional Loss - OR6V1 ENSG00000225781 CDS Human protein_coding chr7:142749843 chr7:142749846 nonsynonymous SNV 0.907 0 24 hm5C_associated_SNPs_50299 0 0 0 0 0 unknown 0.500231664650339 0.500231643932947 0.1447333 4.14347833821438e-08 hm5C_site_45651 DeepMRMD:0.1447333;iRNA_m5C:4.14347833821438e-08 45652 chr5 140482264 140482264 1 + A C GBM 140482260 + 140482240 140482280 41 CTACCTGCCTCTCCCGGAGGCGGCACCGGCCCAGGCCCAGG CTACCTGCCTCTCCCGGAGGCGGCCCCGGCCCAGGCCCAGG < 41bp 0.844614797073815 0.500358501873445 0.53154135 0.5591016 prediction 0.688512590400739 Functional Loss - PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140482260 chr5:140482264 synonymous SNV . 0 25 hm5C_associated_SNPs_50300 0 0 0 0 0 exosome 0.500231643858561 0.500231643921092 0 0 hm5C_site_45652 DeepMRMD:0;iRNA_m5C:0 45653 chr1 179310301 179310301 1 + G T GBM 179310298 + 179310278 179310318 41 CATTGGGCCACTGGCTATAGCAAGAGTTCTCATCCGCTGAT CATTGGGCCACTGGCTATAGCAATAGTTCTCATCCGCTGAT < 41bp 0.844246716842369 0.498310457836054 0.89373183 0.06393224 prediction 0.688493433684739 Functional Loss - SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179310298 chr1:179310301 nonsynonymous SNV 0.910 0 24 hm5C_associated_SNPs_50301 0 0 1 0 0 Ribosome 0.500232541635426 0.500231648441735 0.78746366 1.78638738224102e-06 hm5C_site_45653 DeepMRMD:0.78746366;iRNA_m5C:1.78638738224102e-06 45654 chr22 50278438 50278438 1 + A C rs910798 50278434 + 50278414 50278454 41 GCTCAGCTCTGTGTCCTCGTCTCCAGTAAAGCCGGTCAGAG GCTCAGCTCTGTGTCCTCGTCTCCCGTAAAGCCGGTCAGAG < 41bp 0.844131359411989 0.464505599265384 0.96788853 0.51349574 prediction 0.688262718823977 Functional Loss - ZBED4 ENSG00000100426 CDS Human protein_coding chr22:50278434 chr22:50278438 synonymous SNV . 0 25 hm5C_associated_SNPs_50302 0 0 1 0 0 chromatin 0.500231643921093 0.500231643921082 0.90878558 2.02060590481778e-14 hm5C_site_45654 DeepMRMD:0.90878558;iRNA_m5C:2.02060590481778e-14 45655 chr5 23527680 23527680 1 + G T GBM 23527677 + 23527657 23527697 41 CAGACACCAGAGGACACACACAGGGGAGAAGCCCTATGTCT CAGACACCAGAGGACACACACAGTGGAGAAGCCCTATGTCT < 41bp 0.863352497766642 0.519226207081614 0.9172495 0.56360507 prediction 0.688252581370055 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23527677 chr5:23527680 nonsynonymous SNV 0.828 3 24 hm5C_associated_SNPs_50303 0 0 0 0 0 unknown 0.500231643914809 0.50023164390673 0.70728886 1.61581859003945e-11 hm5C_site_45655 DeepMRMD:0.70728886;iRNA_m5C:1.61581859003945e-11 45656 chr19 16296291 16296291 1 + A C COAD 16296287 + 16296267 16296307 41 AGCAGGTCCAAAAGGGACCCCTGAAGCTGAAAGGCGTCGCA AGCAGGTCCAAAAGGGACCCCTGACGCTGAAAGGCGTCGCA < 41bp 0.854689703693154 0.510615969286671 0.42401117 0.38121772 prediction 0.688147468812967 Functional Loss - FAM32A ENSG00000105058 CDS Human protein_coding chr19:16296287 chr19:16296291 nonsynonymous SNV 0.954 4 25 hm5C_associated_SNPs_50304 0 0 1 0 1 Ribosome 0.500231512181556 0.500231619104019 0 0 hm5C_site_45656 DeepMRMD:0;iRNA_m5C:0 45657 chr19 11559781 11559781 1 + G T LUAD 11559778 + 11559758 11559798 41 TTGTCTCGCAGAAACCCAAACTCGGGGGCTCTCCCACCAGC TTGTCTCGCAGAAACCCAAACTCTGGGGCTCTCCCACCAGC < 41bp 0.843947673127049 0.493489731812445 0.37278283 0.14811775 prediction 0.687895346254098 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559778 chr19:11559781 nonsynonymous SNV 0.544 3 24 hm5C_associated_SNPs_50305 0 0 1 0 2 Nucleus 0.500231643921461 0.500231643912515 0 1.78919101756492e-11 hm5C_site_45657 DeepMRMD:0;iRNA_m5C:1.78919101756492e-11 45658 chr11 130319491 130319491 1 + G T LUAD 130319488 + 130319468 130319508 41 GAGTCGTAGCCGGCGCAGGTCTGGGCGCGCCAAGCGTTTCG GAGTCGTAGCCGGCGCAGGTCTGTGCGCGCCAAGCGTTTCG < 41bp 0.843937786715608 0.483220274957819 0.619107 0.4122132 prediction 0.687875573431216 Functional Loss - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130319488 chr11:130319491 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_50306 0 0 0 0 0 exosome 0.500232121930444 0.500233790864291 0.238214 0 hm5C_site_45658 DeepMRMD:0.238214;iRNA_m5C:0 45659 chr4 184210688 184210688 1 + A C CESC 184210684 + 184210664 184210704 41 TGCAGGCGCTGAGGGACTTGCGGCAGAAGCTGGAGGAACTG TGCAGGCGCTGAGGGACTTGCGGCCGAAGCTGGAGGAACTG < 41bp 0.855599971446948 0.511723972486103 0.84253895 0.8463229 prediction 0.68775199792169 Functional Loss - WWC2 ENSG00000151718 CDS Human protein_coding chr4:184210684 chr4:184210688 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_50307 0 0 1 0 0 Cytosol 0.500231644045023 0.500231644115687 0 0 hm5C_site_45659 DeepMRMD:0;iRNA_m5C:0 45660 chrX 89177666 89177666 1 + G T COAD 89177663 + 89177643 89177683 41 GCCCAGCCGAAGAAAAAGGTCAAGGTTTCTGTCACATCCCC GCCCAGCCGAAGAAAAAGGTCAATGTTTCTGTCACATCCCC < 41bp 0.843871661791045 0.496201525420894 0.53545296 0.18113196 prediction 0.68774332358209 Functional Loss - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177663 chrX:89177666 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_50308 0 0 0 0 0 exosome 0.500231643921092 0.50023164392094 0.07090592 3.05089287166993e-13 hm5C_site_45660 DeepMRMD:0.07090592;iRNA_m5C:3.05089287166993e-13 45661 chr11 130343026 130343026 1 + G T LUAD 130343023 + 130343003 130343043 41 CGCGGTTACAAAGGGCTGATCGGGGATGACAACTACCTGGC CGCGGTTACAAAGGGCTGATCGGTGATGACAACTACCTGGC < 41bp 0.865236238512364 0.521382414766634 0.95796573 0.8356371 prediction 0.68770764749146 Functional Loss - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130343023 chr11:130343026 synonymous SNV . 0 24 hm5C_associated_SNPs_50309 0 0 0 0 1 exosome 0.500231643072438 0.500231125459685 0.24465726 1.03522550620738e-06 hm5C_site_45661 DeepMRMD:0.24465726;iRNA_m5C:1.03522550620738e-06 45662 chr2 97216893 97216893 1 + G T SKCM 97216890 + 97216870 97216910 41 ACCCAGCACCACTTCCCAGCCAGGAGCCCCCCAGGAACAGC ACCCAGCACCACTTCCCAGCCAGTAGCCCCCCAGGAACAGC < 41bp 0.850129541402801 0.506291320649127 0.7431621 0.054914176 prediction 0.687676441507348 Functional Loss - ARID5A ENSG00000196843 CDS Human protein_coding chr2:97216890 chr2:97216893 stopgain 0.028 0 24 hm5C_associated_SNPs_50310 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.4863242 0 hm5C_site_45662 DeepMRMD:0.4863242;iRNA_m5C:0 45663 chr8 145584284 145584284 1 + G T UCEC 145584281 + 145584261 145584301 41 GGCTGGGCGGCCTCTCTCTGCTGGGCGTGTTCTGTGGGGGC GGCTGGGCGGCCTCTCTCTGCTGTGCGTGTTCTGTGGGGGC < 41bp 0.843808377913621 0.490675739913773 0.82990134 0.27426183 prediction 0.687616755827242 Functional Loss - SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145584281 chr8:145584284 nonsynonymous SNV 0.962 2 24 hm5C_associated_SNPs_50311 0 0 1 0 2 Ribosome 0.500231647145208 0.500231669509145 0.65980268 0 hm5C_site_45663 DeepMRMD:0.65980268;iRNA_m5C:0 45664 chr15 40564853 40564853 1 + G T THYM 40564850 + 40564830 40564870 41 TGCTTGGCCCGGGAGAAGCACTCGGGCCGCCAGGTGGCCGT TGCTTGGCCCGGGAGAAGCACTCTGGCCGCCAGGTGGCCGT < 41bp 0.843789500018801 0.490187276002909 0.4260678 0.054661572 prediction 0.687579000037602 Functional Loss - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40564850 chr15:40564853 synonymous SNV . 0 24 hm5C_associated_SNPs_50312 0 0 0 0 1 unknown 0.500231641768129 0.500231644538081 0 0 hm5C_site_45664 DeepMRMD:0;iRNA_m5C:0 45665 chr20 31427641 31427641 1 + G T UCEC 31427638 + 31427618 31427658 41 GGTGTGGGCAACGGAGACGACGAGGCAGCTGAGTTGATGCA GGTGTGGGCAACGGAGACGACGATGCAGCTGAGTTGATGCA < 41bp 0.843780699522195 0.495203669055479 0.4191328 0.020183355 prediction 0.68756139904439 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31427638 chr20:31427641 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_50313 0 0 1 0 1 Cytosol 0.500232065144856 0.500231510048572 0 1.1101925687651e-06 hm5C_site_45665 DeepMRMD:0;iRNA_m5C:1.1101925687651e-06 45666 chr4 24801272 24801272 1 + G T UCEC 24801269 + 24801249 24801289 41 CGAGACATGTACGCCAAGGTCACGGAGATCTGGCAGGAGGT CGAGACATGTACGCCAAGGTCACTGAGATCTGGCAGGAGGT < 41bp 0.85319058840806 0.509410218232851 0.62327754 0.21977505 prediction 0.687560740350418 Functional Loss - SOD3 ENSG00000109610 CDS Human protein_coding chr4:24801269 chr4:24801272 synonymous SNV . 0 24 hm5C_associated_SNPs_50314 0 0 0 0 0 Endoplasmic reticulum 0.500231641439832 0.500231643916557 0.24655508 0 hm5C_site_45666 DeepMRMD:0.24655508;iRNA_m5C:0 45667 chr19 36277899 36277899 1 + G T LUSC 36277896 + 36277876 36277916 41 ATCTCATACCCCTGCTGCTGCGAGGAGCCGAGGCCCCGCTG ATCTCATACCCCTGCTGCTGCGATGAGCCGAGGCCCCGCTG < 41bp 0.843735359715167 0.489407939024887 0.9207989 0.46444637 prediction 0.687470719430334 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36277896 chr19:36277899 stopgain 0.933 0 24 hm5C_associated_SNPs_50315 0 0 1 0 0 chromatin 0.500231643920733 0.500212672517615 0.8415978 3.79428062353693e-05 hm5C_site_45667 DeepMRMD:0.8415978;iRNA_m5C:3.79428062353693e-05 45668 chr2 242289548 242289548 1 + G T LUSC 242289545 + 242289525 242289565 41 CGCAGATGCAGATGCAGATGCAGGGCGGGGATGGCGATGGC CGCAGATGCAGATGCAGATGCAGTGCGGGGATGGCGATGGC < 41bp 0.85420955604759 0.510498037034671 0.7205263 0.22357735 prediction 0.687423038025838 Functional Loss - SEPT2 ENSG00000168385 CDS Human protein_coding chr2:242289545 chr2:242289548 nonsynonymous SNV 0.601 2 24 hm5C_associated_SNPs_50316 0 0 1 0 2 Ribosome 0.500171619184446 0.500230902515842 0.4410526 0 hm5C_site_45668 DeepMRMD:0.4410526;iRNA_m5C:0 45669 chr20 34022198 34022198 1 + T G CESC 34022202 - 34022182 34022222 41 CGCGCCGCCCGGCAGGTCCACGAGAAGGCCCTGTTCCTGGT CGCGCCGCCCGGCAGGTCCACGAGCAGGCCCTGTTCCTGGT < 41bp 0.860601398478629 0.516927234765604 0.59580314 0.28196144 prediction 0.687348327426049 Functional Loss - GDF5;GDF5OS ENSG00000125965;ENSG00000204183 CDS Human other chr20:34022202 chr20:34022198 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_50317 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.19160628 0 hm5C_site_45669 DeepMRMD:0.19160628;iRNA_m5C:0 45670 chr17 18284767 18284767 1 + G T UCEC 18284764 + 18284744 18284784 41 AAGGAGGCCGAGGTGCTGCTCAAGGACCTCTTCCTGGACGT AAGGAGGCCGAGGTGCTGCTCAATGACCTCTTCCTGGACGT < 41bp 0.84365304272102 0.47967096561559 0.78805345 0.549789 prediction 0.68730608544204 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18284764 chr17:18284767 nonsynonymous SNV 0.975 1 24 hm5C_associated_SNPs_50318 0 0 0 0 2 exosome 0.500231643369921 0.500231645236248 0.4765289 0 hm5C_site_45670 DeepMRMD:0.4765289;iRNA_m5C:0 45671 chr21 42613849 42613849 1 + G T LUSC 42613846 + 42613826 42613866 41 TGGAGCCGGCTTGCCCGTTGCTGGATCTGGGACCAACGGAG TGGAGCCGGCTTGCCCGTTGCTGTATCTGGGACCAACGGAG < 41bp 0.843617392204306 0.495011956135117 0.84557784 0.6787512 prediction 0.687234784408612 Functional Loss - BACE2 ENSG00000182240 CDS Human protein_coding chr21:42613846 chr21:42613849 nonsynonymous SNV 0.982 0 24 hm5C_associated_SNPs_50319 0 0 1 0 1 Ribosome 0.50023163959285 0.500231644497045 0.33365328 0 hm5C_site_45671 DeepMRMD:0.33365328;iRNA_m5C:0 45672 chr2 97017653 97017653 1 + G T KIRP 97017650 + 97017630 97017670 41 TTCTGTCCACTCTCCACTGCCAGGACTACAGAAGTGAACTG TTCTGTCCACTCTCCACTGCCAGTACTACAGAAGTGAACTG < 41bp 0.843574524652228 0.493871826126289 0.8833492 0.32191855 prediction 0.687149049304455 Functional Loss - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97017650 chr2:97017653 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_50320 0 0 1 0 1 Cytosol 0.500232217776325 0.500231643921104 0.7666984 1.14771044024131e-06 hm5C_site_45672 DeepMRMD:0.7666984;iRNA_m5C:1.14771044024131e-06 45673 chr11 126124295 126124295 1 + A C rs376719473 126124291 + 126124271 126124311 41 TGGCATTGTCCTTCATCCGGCTGGATATCAGAACGTGCTCA TGGCATTGTCCTTCATCCGGCTGGCTATCAGAACGTGCTCA < 41bp 0.843573187372752 0.476190684393557 0.120695174 0.086046904 prediction 0.687146374745505 Functional Loss - FAM118B ENSG00000197798 CDS Human protein_coding chr11:126124291 chr11:126124295 synonymous SNV . 0 25 hm5C_associated_SNPs_50321 0 0 0 0 2 Ribosome 0.500231643921132 0.500231644081868 0 0 hm5C_site_45673 DeepMRMD:0;iRNA_m5C:0 45674 chr5 121487970 121487970 1 + G T LUSC 121487967 + 121487947 121487987 41 CCGGCCCGCAGGCCTGGATTCCGGGTATGCTATATCTGTGG CCGGCCCGCAGGCCTGGATTCCGTGTATGCTATATCTGTGG < 41bp 0.843536391004149 0.484124274274844 0.8983834 0.28425115 prediction 0.687072782008299 Functional Loss - ZNF474 ENSG00000164185 CDS Human protein_coding chr5:121487967 chr5:121487970 synonymous SNV . 0 24 hm5C_associated_SNPs_50322 0 0 0 0 0 membrane 0.500231643921092 0.500231643837905 0.7967668 1.66374691801252e-10 hm5C_site_45674 DeepMRMD:0.7967668;iRNA_m5C:1.66374691801252e-10 45675 chr16 22545897 22545897 1 + G T BRCA 22545894 + 22545874 22545914 41 CCCTCAGCAGATGATAATATCAAGACACCTGCCGAGCGTCT CCCTCAGCAGATGATAATATCAATACACCTGCCGAGCGTCT < 41bp 0.862468004443759 0.518946181142632 0.91602576 0.65414315 prediction 0.687043646602254 Functional Loss - NPIPB5 ENSG00000243716 CDS Human protein_coding chr16:22545894 chr16:22545897 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_50323 0 0 1 0 0 chromatin 0.50001701373031 0.500231643925896 0.52376522 0 hm5C_site_45675 DeepMRMD:0.52376522;iRNA_m5C:0 45676 chr19 56369429 56369429 1 + G T ACC 56369426 + 56369406 56369446 41 TAACAGAGATCGTGTCTCAACCGGAGAGACTCTTGTTCGTC TAACAGAGATCGTGTCTCAACCGTAGAGACTCTTGTTCGTC < 41bp 0.843509848302806 0.488350916885102 0.8916859 0.34900635 prediction 0.687019696605612 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56369426 chr19:56369429 stopgain 0.015 0 24 hm5C_associated_SNPs_50324 0 0 0 0 0 exosome 0.500231643899499 0.50023164355622 0.7833718 6.86558365714518e-10 hm5C_site_45676 DeepMRMD:0.7833718;iRNA_m5C:6.86558365714518e-10 45677 chr19 3613147 3613147 1 + C A rs571677336 3613150 - 3613130 3613170 41 AGGTACAGCCCGCGGCTGCTCACGGCGCACGAGCTGCCACT AGGTACAGCCCGCGGCTGCTCACTGCGCACGAGCTGCCACT < 41bp 0.85137720963486 0.507887564207787 0.546821 0.043989897 prediction 0.686979290854147 Functional Loss - CACTIN ENSG00000105298 CDS Human protein_coding chr19:3613150 chr19:3613147 synonymous SNV . 0 24 hm5C_associated_SNPs_50325 0 0 1 0 0 Ribosome 0.500231643924284 0.500236757755594 0.093642 0 hm5C_site_45677 DeepMRMD:0.093642;iRNA_m5C:0 45678 chr19 56160593 56160593 1 + G T COAD 56160590 + 56160570 56160610 41 GTGAAGGACGATGAGACCTTCGAGATCTCCATTCCCTTCGA GTGAAGGACGATGAGACCTTCGATATCTCCATTCCCTTCGA < 41bp 0.847870341685966 0.504429960609507 0.118133545 0.0085195005 prediction 0.686880762152917 Functional Loss - CCDC106 ENSG00000173581 CDS Human protein_coding chr19:56160590 chr19:56160593 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_50326 0 0 0 0 1 Cytosol 0.500231647426076 0.50023163975084 0 1.53504713384933e-08 hm5C_site_45678 DeepMRMD:0;iRNA_m5C:1.53504713384933e-08 45679 chr5 23527643 23527643 1 + A C rs199802267 23527639 + 23527619 23527659 41 GAGTGTGGGCGGGGCTTTAGCAATAAGTCACACCTCCTCAG GAGTGTGGGCGGGGCTTTAGCAATCAGTCACACCTCCTCAG < 41bp 0.843331121168113 0.485460421209694 0.3679534 0.32631028 prediction 0.686662242336227 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23527639 chr5:23527643 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_50327 0 0 0 0 0 unknown 0.500231643921092 0.500231345708379 0 5.9642542615812e-07 hm5C_site_45679 DeepMRMD:0;iRNA_m5C:5.9642542615812e-07 45680 chr19 3193375 3193375 1 + A C rs75377748 3193371 + 3193351 3193391 41 GACGAGGCCCTGCTGTCTATCTACAAGCAGACCCAGGCTGC GACGAGGCCCTGCTGTCTATCTACCAGCAGACCCAGGCTGC < 41bp 0.87637122496231 0.533041910996535 0.51250154 0.056785315 prediction 0.68665862793155 Functional Loss - NCLN ENSG00000125912 CDS Human protein_coding chr19:3193371 chr19:3193375 nonsynonymous SNV 0.892 1 25 hm5C_associated_SNPs_50328 0 0 1 0 2 Ribosome 0.500231643920837 0.500231643921094 0.0250030800000001 0 hm5C_site_45680 DeepMRMD:0.0250030800000001;iRNA_m5C:0 45681 chrX 34961414 34961414 1 + G T BRCA 34961411 + 34961391 34961431 41 AGGTGCTGAAACAGCTGGATCCCGAGAGGAAGCTGGAGGAC AGGTGCTGAAACAGCTGGATCCCTAGAGGAAGCTGGAGGAC < 41bp 0.843319786231354 0.489345677897356 0.10202673 0.04948169 prediction 0.686639572462707 Functional Loss - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961411 chrX:34961414 stopgain 0.009 0 24 hm5C_associated_SNPs_50329 0 0 0 0 0 unknown 0.500231643928786 0.500231643847958 0 1.61654911678966e-10 hm5C_site_45681 DeepMRMD:0;iRNA_m5C:1.61654911678966e-10 45682 chr11 63978128 63978128 1 + A C rs146932041 63978124 + 63978104 63978144 41 ACCATGCTATTTGGTGGGAACAGAAGAGGCAGTGGCTGCTG ACCATGCTATTTGGTGGGAACAGACGAGGCAGTGGCTGCTG < 41bp 0.86085901543717 0.517585162190125 0.41020435 0.2815497 prediction 0.68654770649409 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63978124 chr11:63978128 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_50330 0 0 1 0 1 Cytosol 0.500231643915077 0.500231489968628 0 3.07892897177808e-07 hm5C_site_45682 DeepMRMD:0;iRNA_m5C:3.07892897177808e-07 45683 chr12 117426610 117426610 1 + A C BRCA 117426606 + 117426586 117426626 41 ACGGCCCGCCTGTCACATGTCTAGACGTCTCGGCCAACCAA ACGGCCCGCCTGTCACATGTCTAGCCGTCTCGGCCAACCAA < 41bp 0.8432654097445 0.456203894236351 0.30079728 0.0569683 prediction 0.686530819488999 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117426606 chr12:117426610 nonsynonymous SNV 0.975 4 25 hm5C_associated_SNPs_50331 0 0 0 0 1 Cytosol 0.500231645486155 0.500231644101006 0 2.77029799100603e-09 hm5C_site_45683 DeepMRMD:0;iRNA_m5C:2.77029799100603e-09 45684 chr3 9786008 9786008 1 + G T BLCA 9786005 + 9785985 9786025 41 CCGAAGACAGCTGGACCGCCCAAGAGGCCGGGCCGGCCCCC CCGAAGACAGCTGGACCGCCCAATAGGCCGGGCCGGCCCCC < 41bp 0.843256571550837 0.495887391043789 0.53308773 0.07406613 prediction 0.686513143101674 Functional Loss - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9786005 chr3:9786008 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50332 0 0 0 0 0 Nucleus 0.500231643921123 0.500231643921092 0.06617546 6.01740879346835e-14 hm5C_site_45684 DeepMRMD:0.06617546;iRNA_m5C:6.01740879346835e-14 45685 chr3 9786009 9786009 1 + A C OV 9786005 + 9785985 9786025 41 CCGAAGACAGCTGGACCGCCCAAGAGGCCGGGCCGGCCCCC CCGAAGACAGCTGGACCGCCCAAGCGGCCGGGCCGGCCCCC < 41bp 0.843256571550837 0.485572853817156 0.53308773 0.38823822 prediction 0.686513143101674 Functional Loss - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9786005 chr3:9786009 synonymous SNV . 0 25 hm5C_associated_SNPs_50333 0 0 0 0 0 Nucleus 0.500231643921123 0.50023164392274 0.06617546 0 hm5C_site_45685 DeepMRMD:0.06617546;iRNA_m5C:0 45686 chr8 1497162 1497162 1 + G T LUAD 1497159 + 1497139 1497179 41 GACGACTGCGCTGTGGCCCACGCGGGCGCCAAGATCAACCG GACGACTGCGCTGTGGCCCACGCTGGCGCCAAGATCAACCG < 41bp 0.849432636378146 0.506180916501759 0.5394857 0.18273476 prediction 0.686503439752773 Functional Loss - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1497159 chr8:1497162 synonymous SNV . 0 24 hm5C_associated_SNPs_50334 0 0 0 0 0 nucleolus 0.500232323625539 0.500231376558223 0.0789713999999999 1.89413463180799e-06 hm5C_site_45686 DeepMRMD:0.0789713999999999;iRNA_m5C:1.89413463180799e-06 45687 chr18 13826194 13826194 1 + A C LIHC 13826190 + 13826170 13826210 41 ATTGCAGTGGATAGGTACGTCACCATCTTCTACGCCCTGCG ATTGCAGTGGATAGGTACGTCACCCTCTTCTACGCCCTGCG < 41bp 0.870361586347103 0.527111213389792 0.17772177 0.11154011 prediction 0.686500745914622 Functional Loss - MC5R ENSG00000176136 CDS Human protein_coding chr18:13826190 chr18:13826194 nonsynonymous SNV 0.891 4 25 hm5C_associated_SNPs_50335 0 0 0 0 0 unknown 0.500231472609082 0.500231643785175 0 0 hm5C_site_45687 DeepMRMD:0;iRNA_m5C:0 45688 chr1 6269374 6269374 1 + G T LUAD 6269371 + 6269351 6269391 41 ACCTGGAATCGGCTTACGTGCAGGGCTGCGAGCGGCTGGAG ACCTGGAATCGGCTTACGTGCAGTGCTGCGAGCGGCTGGAG < 41bp 0.843608860298842 0.500366607512304 0.9139123 0.80623233 prediction 0.686484505573075 Functional Loss - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6269371 chr1:6269374 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_50336 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921088 0.21535994 8.43769498715119e-15 hm5C_site_45688 DeepMRMD:0.21535994;iRNA_m5C:8.43769498715119e-15 45689 chr1 46878853 46878853 1 + G T LUSC 46878850 + 46878830 46878870 41 GAGGCCCAGATGGAACATTACAGGGGCTACTTTGGGGATAT GAGGCCCAGATGGAACATTACAGTGGCTACTTTGGGGATAT < 41bp 0.844595676950568 0.501411361024651 0.9040402 0.38840646 prediction 0.686368631851834 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46878850 chr1:46878853 nonsynonymous SNV 0.584 1 24 hm5C_associated_SNPs_50337 0 0 0 1 2 Ribosome 0.500231643921351 0.500231643921046 0.8080804 6.09290395914286e-13 hm5C_site_45689 DeepMRMD:0.8080804;iRNA_m5C:6.09290395914286e-13 45690 chr4 151504382 151504382 1 + G T SKCM 151504379 + 151504359 151504399 41 GATGCCCGCTACGAGGGGCTCGAGGTCATTTCGCCCACCGA GATGCCCGCTACGAGGGGCTCGATGTCATTTCGCCCACCGA < 41bp 0.848478626271545 0.505418233595274 0.9120493 0.2772928 prediction 0.686120785352543 Functional Loss - MAB21L2 ENSG00000181541 CDS Human protein_coding chr4:151504379 chr4:151504382 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_50338 0 0 0 0 0 nucleus 0.500231647623233 0.50023164264448 0.8240986 9.95750770727e-09 hm5C_site_45690 DeepMRMD:0.8240986;iRNA_m5C:9.95750770727e-09 45691 chr12 113435403 113435403 1 + G T BRCA 113435400 + 113435380 113435420 41 TTACGGTGTATGCCTGGGAACAGGGGTGCAGAAAAGACAAC TTACGGTGTATGCCTGGGAACAGTGGTGCAGAAAAGACAAC < 41bp 0.842975610906354 0.488229071762551 0.89486176 0.20253575 prediction 0.685951221812709 Functional Loss - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113435400 chr12:113435403 nonsynonymous SNV 0.903 3 24 hm5C_associated_SNPs_50339 0 0 0 0 1 exosome 0.500231643745542 0.500231643922369 0.78972352 0 hm5C_site_45691 DeepMRMD:0.78972352;iRNA_m5C:0 45692 chr16 19126381 19126381 1 + G T LGG 19126378 + 19126358 19126398 41 GCCTGGGCGAGGAGCCAGCGCTGGCCCCGGCCTTCCGCGGC GCCTGGGCGAGGAGCCAGCGCTGTCCCCGGCCTTCCGCGGC < 41bp 0.842972930534408 0.492722004090333 0.8987217 0.7507844 prediction 0.685945861068816 Functional Loss - ITPRIPL2 ENSG00000205730 CDS Human protein_coding chr16:19126378 chr16:19126381 nonsynonymous SNV 0.052 0 24 hm5C_associated_SNPs_50340 0 0 1 0 0 Ribosome 0.500231643927421 0.500231648095038 0.2958746 0 hm5C_site_45692 DeepMRMD:0.2958746;iRNA_m5C:0 45693 chr11 114183004 114183004 1 + G T LUSC 114183001 + 114182981 114183021 41 CTGGTGATCATGGATGCGCTCAAGAGCAGCTACTACATGAT CTGGTGATCATGGATGCGCTCAATAGCAGCTACTACATGAT < 41bp 0.842951796974358 0.493303986456316 0.8315268 0.09170148 prediction 0.685903593948715 Functional Loss - NNMT ENSG00000166741 CDS Human protein_coding chr11:114183001 chr11:114183004 nonsynonymous SNV 0.933 0 24 hm5C_associated_SNPs_50341 0 0 0 0 0 Cytosol 0.500232349142436 0.500231643921053 0.6630536 1.41044276591451e-06 hm5C_site_45693 DeepMRMD:0.6630536;iRNA_m5C:1.41044276591451e-06 45694 chrX 70613222 70613222 1 + A C GBM 70613218 + 70613198 70613238 41 GTCAACAGAACAGGCTCGTTCTGGAGAGGGGCCCATGAGTA GTCAACAGAACAGGCTCGTTCTGGCGAGGGGCCCATGAGTA < 41bp 0.842928353242151 0.48566979996162 0.41721937 0.33856913 prediction 0.685856706484302 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70613218 chrX:70613222 synonymous SNV . 0 25 hm5C_associated_SNPs_50342 0 0 1 0 1 Cytosol 0.500231643921092 0.50023164392109 0 4.66293670342566e-15 hm5C_site_45694 DeepMRMD:0;iRNA_m5C:4.66293670342566e-15 45695 chr9 70918913 70918913 1 + G T LUSC 70918910 + 70918890 70918930 41 GCGCAGAATTTGTCCCCGACCGCGTGGAGCTACTGCCACCT GCGCAGAATTTGTCCCCGACCGCTTGGAGCTACTGCCACCT < 41bp 0.848535000884646 0.505609987973358 0.4222721 0.11479142 prediction 0.685850025822577 Functional Loss - FOXD4L3 ENSG00000187559 CDS Human protein_coding chr9:70918910 chr9:70918913 nonsynonymous SNV 0.219 2 24 hm5C_associated_SNPs_50343 0 0 0 0 0 exosome 0.500231643921087 0.500231643921092 0 0 hm5C_site_45695 DeepMRMD:0;iRNA_m5C:0 45696 chr19 11460702 11460702 1 + G T GBM 11460699 + 11460679 11460719 41 AGCCAGTTACAGGCCCAGACCAAGGTGAACCACCTTGGCCC AGCCAGTTACAGGCCCAGACCAATGTGAACCACCTTGGCCC < 41bp 0.842912386731587 0.480475115604372 0.91574323 0.2816925 prediction 0.685824773463174 Functional Loss - CCDC159 ENSG00000183401 CDS Human protein_coding chr19:11460699 chr19:11460702 nonsynonymous SNV 0.967 3 24 hm5C_associated_SNPs_50344 0 0 0 0 2 exosome 0.500231643921092 0.500231643921126 0.83148646 0 hm5C_site_45696 DeepMRMD:0.83148646;iRNA_m5C:0 45697 chr16 31273069 31273069 1 + G T UCEC 31273066 + 31273046 31273086 41 CTGAAAACGCAATGACCTTCCAAGAGAACGCAAGGGGCTTC CTGAAAACGCAATGACCTTCCAATAGAACGCAAGGGGCTTC < 41bp 0.842898620831087 0.496503091369846 0.3295815 0.06573033 prediction 0.685797241662174 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31273066 chr16:31273069 stopgain 0.835 0 24 hm5C_associated_SNPs_50345 0 0 0 0 2 Endoplasmic reticulum 0.500231643917963 0.500232326218909 0 0 hm5C_site_45697 DeepMRMD:0;iRNA_m5C:0 45698 chr19 51920678 51920678 1 + C A BLCA 51920681 - 51920661 51920701 41 GGAGATTCTGGATACGAGTGCAGGAGTCAGTGATGGTGCCG GGAGATTCTGGATACGAGTGCAGTAGTCAGTGATGGTGCCG < 41bp 0.842887010775406 0.491281010136014 0.87176824 0.4740693 prediction 0.685774021550812 Functional Loss - SIGLEC10 ENSG00000142512 CDS Human protein_coding chr19:51920681 chr19:51920678 stopgain 0.000 0 24 hm5C_associated_SNPs_50346 0 0 0 0 0 exosome 0.500258323916736 0.500231643951791 0.74353648 5.33599298897514e-05 hm5C_site_45698 DeepMRMD:0.74353648;iRNA_m5C:5.33599298897514e-05 45699 chr19 5778558 5778558 1 + G T GBM 5778555 + 5778535 5778575 41 ACAGCACGCGGCCGCAGGATCAAGAAGTGTGCGACACAGCT ACAGCACGCGGCCGCAGGATCAATAAGTGTGCGACACAGCT < 41bp 0.842870911777959 0.490473738471498 0.9029074 0.27136877 prediction 0.685741823555918 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5778555 chr19:5778558 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_50347 0 0 0 0 0 nucleus 0.500231736342669 0.500231646056812 0.8058148 1.80571714691879e-07 hm5C_site_45699 DeepMRMD:0.8058148;iRNA_m5C:1.80571714691879e-07 45700 chr19 15806829 15806829 1 + G T LUSC 15806826 + 15806806 15806846 41 TCCCCCAGCTCCCTTCATCTCCCGATGCTGCACCCAGGACA TCCCCCAGCTCCCTTCATCTCCCTATGCTGCACCCAGGACA < 41bp 0.854820552739237 0.511965990134836 0.17571878 0.14992896 prediction 0.685709125208802 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15806826 chr19:15806829 nonsynonymous SNV 0.129 4 24 hm5C_associated_SNPs_50348 0 0 1 0 2 exosome 0.500231643921093 0.500231643921094 0 0 hm5C_site_45700 DeepMRMD:0;iRNA_m5C:0 45701 chr20 61471922 61471922 1 + G T UCEC 61471919 + 61471899 61471939 41 CAAGGCGTGCCCGGCACCAGCAAGGACGGCCAGGACGGTGC CAAGGCGTGCCCGGCACCAGCAATGACGGCCAGGACGGTGC < 41bp 0.849946664881488 0.507128248500748 0.82826406 0.41731092 prediction 0.685636832761479 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61471919 chr20:61471922 nonsynonymous SNV 0.175 4 24 hm5C_associated_SNPs_50349 0 0 1 0 1 Cytosol 0.500231643921092 0.50023164392301 0.65652812 0 hm5C_site_45701 DeepMRMD:0.65652812;iRNA_m5C:0 45702 chr12 10213761 10213761 1 + G T UCEC 10213758 + 10213738 10213778 41 CCACCATTGCGATGCAGCAGCAAGAAAAACTCATCCAACAA CCACCATTGCGATGCAGCAGCAATAAAAACTCATCCAACAA < 41bp 0.8428104481513 0.491884525994835 0.35443765 0.11681944 prediction 0.685620896302601 Functional Loss - CLEC9A ENSG00000197992 CDS Human protein_coding chr12:10213758 chr12:10213761 stopgain 0.914 1 24 hm5C_associated_SNPs_50350 0 0 0 0 0 exosome 0.500234825670852 0.500231718144449 0 6.21505280751222e-06 hm5C_site_45702 DeepMRMD:0;iRNA_m5C:6.21505280751222e-06 45703 chr5 147491427 147491427 1 + G T LUSC 147491424 + 147491404 147491444 41 AGGGTCTAGATGGGAAAATCCACGGCAACACCTGCTCCATG AGGGTCTAGATGGGAAAATCCACTGCAACACCTGCTCCATG < 41bp 0.843009108278782 0.50026859008685 0.3697192 0.15579477 prediction 0.685481036383864 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147491424 chr5:147491427 nonsynonymous SNV 0.841 3 24 hm5C_associated_SNPs_50351 0 0 0 0 2 Endoplasmic reticulum 0.500231643922461 0.500231643921092 0 2.73714384491086e-12 hm5C_site_45703 DeepMRMD:0;iRNA_m5C:2.73714384491086e-12 45704 chr11 4470977 4470977 1 + G T GBM 4470974 + 4470954 4470994 41 TGCAAGCCACTGCACTACACCAAGGTCCTGACTGGGTCCCT TGCAAGCCACTGCACTACACCAATGTCCTGACTGGGTCCCT < 41bp 0.842730139278779 0.485027178412128 0.35147357 0.027724802 prediction 0.685460278557558 Functional Loss - OR52K2 ENSG00000181963 CDS Human protein_coding chr11:4470974 chr11:4470977 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_50352 0 0 0 0 0 exosome 0.500231642010507 0.500231634839933 0 1.43411487130152e-08 hm5C_site_45704 DeepMRMD:0;iRNA_m5C:1.43411487130152e-08 45705 chr1 151259666 151259666 1 + G T rs147172634 151259663 + 151259643 151259683 41 GCCAGTGGACAAGTCTTCCCCAGGAAGTCCCCAGAGTCCCT GCCAGTGGACAAGTCTTCCCCAGTAAGTCCCCAGAGTCCCT < 41bp 0.842728765030584 0.482522020179096 0.7957488 0.3318718 prediction 0.685457530061168 Functional Loss - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151259663 chr1:151259666 nonsynonymous SNV 0.605 0 24 hm5C_associated_SNPs_50353 0 0 1 0 0 chromatin 0.500231643921095 0.500231643865463 0.5914976 1.11262776769649e-10 hm5C_site_45705 DeepMRMD:0.5914976;iRNA_m5C:1.11262776769649e-10 45706 chr14 69805381 69805381 1 + G T LUAD 69805378 + 69805358 69805398 41 TTTCCTGCAGAGCTCTCCTTCAGGGTGTGGATGTGTGGTGG TTTCCTGCAGAGCTCTCCTTCAGTGTGTGGATGTGTGGTGG < 41bp 0.861117051634421 0.518407519323699 0.9225611 0.22539777 prediction 0.685419064621444 Functional Loss - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69805378 chr14:69805381 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_50354 0 0 0 0 1 chromatin 0.500232404200165 0.500231881338506 0.8451222 1.04572331682817e-06 hm5C_site_45706 DeepMRMD:0.8451222;iRNA_m5C:1.04572331682817e-06 45707 chr14 29237290 29237290 1 + A C SKCM 29237286 + 29237266 29237306 41 AGCGACGACGTGTTCATCGGCGGCACCACGGGCAAGCTGCG AGCGACGACGTGTTCATCGGCGGCCCCACGGGCAAGCTGCG < 41bp 0.842672333846996 0.48742791760262 0.40048614 0.24631336 prediction 0.685344667693993 Functional Loss - FOXG1 ENSG00000176165 CDS Human protein_coding chr14:29237286 chr14:29237290 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50355 0 0 0 0 0 Cytosol 0.500231647882844 0.500231643921006 0 7.92367482738143e-09 hm5C_site_45707 DeepMRMD:0;iRNA_m5C:7.92367482738143e-09 45708 chr11 65123537 65123537 1 + G T UCEC 65123534 + 65123514 65123554 41 ATCGACGAGGCTCTGCTCTGCTGGTACCACATTGCCCGGGC ATCGACGAGGCTCTGCTCTGCTGTTACCACATTGCCCGGGC < 41bp 0.852112132180116 0.509469872241609 0.41440943 0.22123379 prediction 0.685284519877015 Functional Loss - TIGD3 ENSG00000173825 CDS Human protein_coding chr11:65123534 chr11:65123537 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50356 0 0 0 0 0 Endoplasmic reticulum 0.500231549200967 0.50023164403908 0 0 hm5C_site_45708 DeepMRMD:0;iRNA_m5C:0 45709 chr6 109762600 109762600 1 + A C rs749621 109762596 + 109762576 109762616 41 AGCAAGCACCGGGCCGACCGCATGAGGCGCCTGGGAGACTT AGCAAGCACCGGGCCGACCGCATGCGGCGCCTGGGAGACTT < 41bp 0.865813531300279 0.523185846577936 0.34052163 0.21874312 prediction 0.685255369444685 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109762596 chr6:109762600 synonymous SNV . 0 25 hm5C_associated_SNPs_50357 0 0 0 0 2 chromatin 0.500231641096562 0.500231643920961 0 0 hm5C_site_45709 DeepMRMD:0;iRNA_m5C:0 Atrial fibrillation 45710 chr19 15852916 15852916 1 + G T UCEC 15852913 + 15852893 15852933 41 CCTTCTGCTGAGGGCCGGCACAAGACTTTCTCCACTTGTGT CCTTCTGCTGAGGGCCGGCACAATACTTTCTCCACTTGTGT < 41bp 0.842601252409547 0.495524594741993 0.21781737 0.04568988 prediction 0.685202504819093 Functional Loss - OR10H3 ENSG00000171936 CDS Human protein_coding chr19:15852913 chr19:15852916 nonsynonymous SNV 0.431 3 24 hm5C_associated_SNPs_50358 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_45710 DeepMRMD:0;iRNA_m5C:0 45711 chr16 72094027 72094027 1 + G T UCEC 72094024 + 72094004 72094044 41 TTGACAGTATGTGGGAAGCCCAAGAATCCGGCAAACCCAGT TTGACAGTATGTGGGAAGCCCAATAATCCGGCAAACCCAGT < 41bp 0.842599660277554 0.496493885641675 0.30521166 0.796324 prediction 0.685199320555109 Functional Loss - HP ENSG00000257017 CDS Human protein_coding chr16:72094024 chr16:72094027 nonsynonymous SNV 0.386 0 24 hm5C_associated_SNPs_50359 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_45711 DeepMRMD:0;iRNA_m5C:0 45712 chr17 45822286 45822286 1 + G T LUAD 45822283 + 45822263 45822303 41 TGGTTCCCCAGGCTTACTGGCTGGGGGCCCCCCGGGACCAC TGGTTCCCCAGGCTTACTGGCTGTGGGCCCCCCGGGACCAC < 41bp 0.858211595481077 0.515622650739913 0.88083917 0.17919478 prediction 0.685177889482327 Functional Loss - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45822283 chr17:45822286 nonsynonymous SNV 0.918 3 24 hm5C_associated_SNPs_50360 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0.76167834 0 hm5C_site_45712 DeepMRMD:0.76167834;iRNA_m5C:0 45713 chr14 105926761 105926761 1 + G T KIRC 105926758 + 105926738 105926778 41 GTCCGACAGCCCAGCCTGCACATGAGCGCCGCAGCTGCCTC GTCCGACAGCCCAGCCTGCACATTAGCGCCGCAGCTGCCTC < 41bp 0.842571626627357 0.491578173288105 0.31475782 0.22851661 prediction 0.685143253254713 Functional Loss - MTA1 ENSG00000182979 CDS Human protein_coding chr14:105926758 chr14:105926761 nonsynonymous SNV 0.959 2 24 hm5C_associated_SNPs_50361 0 0 1 0 2 Cytosol 0.500231625205338 0.500231644103517 0 0 hm5C_site_45713 DeepMRMD:0;iRNA_m5C:0 45714 chr16 1550635 1550635 1 + G T LUAD 1550632 + 1550612 1550652 41 GCCTGCCCCCCGTGCGACGCCTGGGCATGATCGTGGCAGAG GCCTGCCCCCCGTGCGACGCCTGTGCATGATCGTGGCAGAG < 41bp 0.842487966403793 0.485701230333773 0.040703356 0.010478377 prediction 0.684975932807585 Functional Loss - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550632 chr16:1550635 nonsynonymous SNV 0.634 4 24 hm5C_associated_SNPs_50362 0 0 0 0 1 Cytosol 0.500231378575037 0.500231717439366 0 0 hm5C_site_45714 DeepMRMD:0;iRNA_m5C:0 45715 chr19 3543916 3543916 1 + A C rs575218949 3543912 + 3543892 3543932 41 TCGGCACCCCAGCGCCCGCCCGGCACCACCCAGAACTACCG TCGGCACCCCAGCGCCCGCCCGGCCCCACCCAGAACTACCG < 41bp 0.842465256653464 0.487161945726604 0.23312336 0.20426777 prediction 0.684930513306929 Functional Loss - C19orf71 ENSG00000183397 CDS Human protein_coding chr19:3543912 chr19:3543916 nonsynonymous SNV 0.011 2 25 hm5C_associated_SNPs_50363 0 0 0 0 1 nucleolus 0.500231640785795 0.500231643921097 0 0 hm5C_site_45715 DeepMRMD:0;iRNA_m5C:0 45716 chr12 132633409 132633409 1 + G T HNSC 132633406 + 132633386 132633426 41 CAGCTGGCGCAGCCCACGCTCATGATCGACTTCCTCACCCG CAGCTGGCGCAGCCCACGCTCATTATCGACTTCCTCACCCG < 41bp 0.842442839572296 0.498970779645485 0.3928219 0.042577654 prediction 0.684885679144591 Functional Loss - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132633406 chr12:132633409 nonsynonymous SNV 0.898 1 24 hm5C_associated_SNPs_50364 0 0 0 0 2 Ribosome 0.500231617561342 0.500216266454897 0 3.07022128891443e-05 hm5C_site_45716 DeepMRMD:0;iRNA_m5C:3.07022128891443e-05 45717 chr5 140579492 140579492 1 + G T LUAD 140579489 + 140579469 140579509 41 GCGGGAGTTTTGTAGGCAATCTGGCAAAGGACCTGGGGCTG GCGGGAGTTTTGTAGGCAATCTGTCAAAGGACCTGGGGCTG < 41bp 0.842657168693743 0.500224854738937 0.19725871 0.041442394 prediction 0.684864627909613 Functional Loss - PCDHB11 ENSG00000197479 CDS Human protein_coding chr5:140579489 chr5:140579492 nonsynonymous SNV 0.039 1 24 hm5C_associated_SNPs_50365 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921258 0 0 hm5C_site_45717 DeepMRMD:0;iRNA_m5C:0 45718 chr11 71249246 71249246 1 + A C HNSC 71249242 + 71249222 71249262 41 TGTGTGCCAGCCTGTTCCTGCTCCAGCTGTGGCTCCTGTGG TGTGTGCCAGCCTGTTCCTGCTCCCGCTGTGGCTCCTGTGG < 41bp 0.842427639207593 0.495426175489083 0.8393623 0.30234775 prediction 0.684855278415186 Functional Loss - KRTAP5-8 ENSG00000241233 CDS Human protein_coding chr11:71249242 chr11:71249246 nonsynonymous SNV 0.960 2 25 hm5C_associated_SNPs_50366 0 0 0 0 0 unknown 0.500231644340024 0.500231643916243 0.6787246 8.47562242611843e-10 hm5C_site_45718 DeepMRMD:0.6787246;iRNA_m5C:8.47562242611843e-10 45719 chr9 126794808 126794808 1 + G T LUSC 126794805 + 126794785 126794825 41 GCTGCAGACAGGGACGCCATCGGGCCCGGCCTCGGAGCTCT GCTGCAGACAGGGACGCCATCGGTCCCGGCCTCGGAGCTCT < 41bp 0.84438719272647 0.50196092602989 0.94891167 0.6679568 prediction 0.684852533393159 Functional Loss - LHX2 ENSG00000106689 CDS Human protein_coding chr9:126794805 chr9:126794808 nonsynonymous SNV 0.301 3 24 hm5C_associated_SNPs_50367 0 0 0 0 0 Cytosol 0.500231643904934 0.500231643921092 0.56190974 0 hm5C_site_45719 DeepMRMD:0.56190974;iRNA_m5C:0 45720 chr19 14065217 14065217 1 + G T UCEC 14065214 + 14065194 14065234 41 CCCCGGGTGTGCGTGTCCCTCAAGAACATTGTGGATGAGGA CCCCGGGTGTGCGTGTCCCTCAATAACATTGTGGATGAGGA < 41bp 0.84238691193146 0.490307945133569 0.6705514 0.31645614 prediction 0.684773823862919 Functional Loss - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14065214 chr19:14065217 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_50368 0 0 1 0 1 Cytosol 0.500231649817144 0.500231643922512 0.3411028 1.1789264675599e-08 hm5C_site_45720 DeepMRMD:0.3411028;iRNA_m5C:1.1789264675599e-08 45721 chr1 26507299 26507299 1 + G T UCEC 26507296 + 26507276 26507316 41 AGAGCATAGTCCAAGGCTGCCTGGGGGACTGTGCCAAGACC AGAGCATAGTCCAAGGCTGCCTGTGGGACTGTGCCAAGACC < 41bp 0.842316545243843 0.488809486061231 0.33480573 0.017260045 prediction 0.684633090487687 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26507296 chr1:26507299 nonsynonymous SNV 0.022 3 24 hm5C_associated_SNPs_50369 0 0 0 2 2 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_45721 DeepMRMD:0;iRNA_m5C:0 45722 chr9 71835987 71835987 1 + A C PAAD 71835983 + 71835963 71836003 41 GCCGCAGCTGGGAGGACAGCCCGGAAAGGGGGCGTCCCCAT GCCGCAGCTGGGAGGACAGCCCGGCAAGGGGGCGTCCCCAT < 41bp 0.845119404224978 0.502832395143516 0.7245618 0.56857663 prediction 0.684574018162926 Functional Loss - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71835983 chr9:71835987 nonsynonymous SNV 0.698 1 25 hm5C_associated_SNPs_50370 0 0 1 0 0 Nucleus 0.500231643998197 0.500231648146748 0.31197034 0 hm5C_site_45722 DeepMRMD:0.31197034;iRNA_m5C:0 45723 chr11 66373040 66373040 1 + G T UCEC 66373037 + 66373017 66373057 41 CGGGGAGGCCATCCCTTATCCAAGATCACAGGGAACTCCGG CGGGGAGGCCATCCCTTATCCAATATCACAGGGAACTCCGG < 41bp 0.854707652043468 0.512508028447487 0.811249 0.22212332 prediction 0.684399247191963 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66373037 chr11:66373040 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50371 0 0 1 1 2 Ribosome 0.500231642154074 0.500231643921092 0.622498 0 hm5C_site_45723 DeepMRMD:0.622498;iRNA_m5C:0 45724 chr9 137967648 137967648 1 + A C ESCA 137967644 + 137967624 137967664 41 CCTGATGGGCACTGAACTCACTCAAGTACGTGCATCCAACG CCTGATGGGCACTGAACTCACTCACGTACGTGCATCCAACG < 41bp 0.842194945934807 0.486238144421685 0.13618833 0.08886188 prediction 0.684389891869615 Functional Loss - OLFM1 ENSG00000130558 CDS Human protein_coding chr9:137967644 chr9:137967648 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_50372 0 0 0 0 1 Endoplasmic reticulum 0.50023164392119 0.500232102178376 0 0 hm5C_site_45724 DeepMRMD:0;iRNA_m5C:0 45725 chr11 69458005 69458005 1 + G T UCEC 69458002 + 69457982 69458022 41 ACCGACAACTCCATCCGGCCCGAGGAGCTGCTGGTAACCAC ACCGACAACTCCATCCGGCCCGATGAGCTGCTGGTAACCAC < 41bp 0.849948842062142 0.507756168404418 0.6948016 0.051144958 prediction 0.684385347315448 Functional Loss - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69458002 chr11:69458005 nonsynonymous SNV 0.967 0 24 hm5C_associated_SNPs_50373 0 0 1 0 1 Ribosome 0.500231643921071 0.500231643661909 0.3896032 5.18324494436229e-10 hm5C_site_45725 DeepMRMD:0.3896032;iRNA_m5C:5.18324494436229e-10 45726 chr6 110301074 110301074 1 + G T rs79977590 110301071 + 110301051 110301091 41 GTGCGCATCTGCCAGGTGGTCTGGCGCCACGCGCACCAGAT GTGCGCATCTGCCAGGTGGTCTGTCGCCACGCGCACCAGAT < 41bp 0.842282635012919 0.500108457274154 0.91289806 0.2841438 prediction 0.684348355477529 Functional Loss - GPR6 ENSG00000146360 CDS Human protein_coding chr6:110301071 chr6:110301074 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50374 0 0 0 0 0 unknown 0.500231530691357 0.500232496583001 0.82579612 0 hm5C_site_45726 DeepMRMD:0.82579612;iRNA_m5C:0 45727 chr22 26829937 26829937 1 + A C UCEC 26829933 + 26829913 26829953 41 CTGAGTGCGTGCGCTGCACCCACAACGAGGGCCTCAACCAG CTGAGTGCGTGCGCTGCACCCACACCGAGGGCCTCAACCAG < 41bp 0.874658319081388 0.532528406055316 0.1778751 0.07902175 prediction 0.684259826052144 Functional Loss - ASPHD2 ENSG00000128203 CDS Human protein_coding chr22:26829933 chr22:26829937 nonsynonymous SNV 0.979 0 25 hm5C_associated_SNPs_50375 0 0 0 0 0 Endoplasmic reticulum 0.500231643908284 0.500182275572914 0 9.87366707401183e-05 hm5C_site_45727 DeepMRMD:0;iRNA_m5C:9.87366707401183e-05 45728 chr5 140572211 140572211 1 + G T HNSC 140572208 + 140572188 140572228 41 GGGAGTGTCCTTGGCAGGTTCTGGGTTTGGACGTTATTCGG GGGAGTGTCCTTGGCAGGTTCTGTGTTTGGACGTTATTCGG < 41bp 0.842126539117225 0.496360374861551 0.87865734 0.56373924 prediction 0.684253078234449 Functional Loss - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140572208 chr5:140572211 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_50376 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.6298362 0 hm5C_site_45728 DeepMRMD:0.6298362;iRNA_m5C:0 45729 chr19 4433275 4433275 1 + G T UCEC 4433272 + 4433252 4433292 41 CGGCTCAAGCGGCTCATTTCCGAGAACTCAGTGTATGAGAA CGGCTCAAGCGGCTCATTTCCGATAACTCAGTGTATGAGAA < 41bp 0.842119572207935 0.496342742046063 0.8863163 0.17565894 prediction 0.68423914441587 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4433272 chr19:4433275 nonsynonymous SNV 0.861 2 24 hm5C_associated_SNPs_50377 0 0 1 0 0 Nucleus 0.50023260197282 0.500231643919665 0.7726326 1.91610630873029e-06 hm5C_site_45729 DeepMRMD:0.7726326;iRNA_m5C:1.91610630873029e-06 45730 chr3 111705808 111705808 1 + A C LGG 111705804 + 111705784 111705824 41 AGGGTGGCTTATGCTTCATGCTGCAATTGCACGACCAGAGA AGGGTGGCTTATGCTTCATGCTGCCATTGCACGACCAGAGA < 41bp 0.876393719494562 0.534280860930619 0.1249367 0.112910986 prediction 0.684225717127885 Functional Loss - ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111705804 chr3:111705808 synonymous SNV . 0 25 hm5C_associated_SNPs_50378 0 0 0 0 2 Ribosome 0.500226558276316 0.500231643920114 0 0 hm5C_site_45730 DeepMRMD:0;iRNA_m5C:0 45731 chr1 1957077 1957077 1 + A C SARC 1957073 + 1957053 1957093 41 GTGGACAAGCTGTGGCTGCCCGACACCTTCATCGTGAACGC GTGGACAAGCTGTGGCTGCCCGACCCCTTCATCGTGAACGC < 41bp 0.868306335995111 0.526234090865722 0.076507896 0.058634013 prediction 0.684144490258778 Functional Loss - GABRD ENSG00000187730 CDS Human protein_coding chr1:1957073 chr1:1957077 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_50379 0 0 0 0 0 Cytosol 0.500231678061488 0.50023164394435 0 6.82342771174405e-08 hm5C_site_45731 DeepMRMD:0;iRNA_m5C:6.82342771174405e-08 45732 chr9 126128327 126128327 1 + G T LUSC 126128324 + 126128304 126128344 41 ACGGGGGCACCCGTTGCCAGCTGGACCTCGACGAGTGCCAG ACGGGGGCACCCGTTGCCAGCTGTACCTCGACGAGTGCCAG < 41bp 0.841989783732417 0.495064844562666 0.28580695 0.18284261 prediction 0.683979567464833 Functional Loss - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126128324 chr9:126128327 nonsynonymous SNV 0.991 5 24 hm5C_associated_SNPs_50380 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_45732 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 45733 chr12 53454578 53454578 1 + G T LUAD 53454575 + 53454555 53454595 41 AAAGGCCCCTGAGCTGCCGTCGGGAAGTGGGCCTGAGCCTC AAAGGCCCCTGAGCTGCCGTCGGTAAGTGGGCCTGAGCCTC < 41bp 0.843772422952382 0.501792942406147 0.8967285 0.7362404 prediction 0.683958961092471 Functional Loss - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53454575 chr12:53454578 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_50381 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921121 0.3209762 0 hm5C_site_45733 DeepMRMD:0.3209762;iRNA_m5C:0 45734 chrX 26157298 26157298 1 + G T LUAD 26157295 + 26157275 26157315 41 CTAGCATCCCTGAAGCGCTTCAGGGAGCCCCATCCACCACC CTAGCATCCCTGAAGCGCTTCAGTGAGCCCCATCCACCACC < 41bp 0.841977119078348 0.479152652879736 0.9117515 0.24858281 prediction 0.683954238156695 Functional Loss - MAGEB18 ENSG00000176774 CDS Human protein_coding chrX:26157295 chrX:26157298 stopgain 0.004 0 24 hm5C_associated_SNPs_50382 0 0 0 0 0 unknown 0.500231643864655 0.500231643921092 0.823503 0 hm5C_site_45734 DeepMRMD:0.823503;iRNA_m5C:0 45735 chr2 238443261 238443261 1 + G T COAD 238443258 + 238443238 238443278 41 TGGAATGCCTGCTGACCTACCTGGAGAACACAGTTGTGCCT TGGAATGCCTGCTGACCTACCTGTAGAACACAGTTGTGCCT < 41bp 0.841929508787602 0.499425833889247 0.5200769 0.07806045 prediction 0.683859017575203 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238443258 chr2:238443261 stopgain 0.009 0 24 hm5C_associated_SNPs_50383 0 0 0 0 2 Nucleus 0.500275313015739 0.500229532598591 0.0401537999999999 9.15608342977325e-05 hm5C_site_45735 DeepMRMD:0.0401537999999999;iRNA_m5C:9.15608342977325e-05 45736 chr2 88828944 88828944 1 + G T STAD 88828941 + 88828921 88828961 41 TGTCTTCATTGCCATATAGTCAAGGTCCCCATCTTGAACCG TGTCTTCATTGCCATATAGTCAATGTCCCCATCTTGAACCG < 41bp 0.854890800772076 0.512965792720482 0.83120024 0.17726597 prediction 0.683850016103188 Functional Loss - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88828941 chr2:88828944 nonsynonymous SNV 0.697 4 24 hm5C_associated_SNPs_50384 0 0 0 0 0 unknown 0.500231728730971 0.500232022274609 0.66240048 0 hm5C_site_45736 DeepMRMD:0.66240048;iRNA_m5C:0 45737 chr5 140725835 140725835 1 + G T LUAD 140725832 + 140725812 140725852 41 TCGCACTTTGTGGGCGCGGACGGGGTTCGGGCTTTCCTGCA TCGCACTTTGTGGGCGCGGACGGTGTTCGGGCTTTCCTGCA < 41bp 0.841887599815758 0.495821963581869 0.93721795 0.8234129 prediction 0.683775199631516 Functional Loss - PCDHGA3 ENSG00000254245 CDS Human protein_coding chr5:140725832 chr5:140725835 synonymous SNV . 0 24 hm5C_associated_SNPs_50385 0 0 0 0 0 exosome 0.500231643921093 0.50023164163935 0.2276101 4.5634860335042e-09 hm5C_site_45737 DeepMRMD:0.2276101;iRNA_m5C:4.5634860335042e-09 45738 chr17 42636026 42636026 1 + A C UCEC 42636022 + 42636002 42636042 41 CGCACGGTGGTGCAGGGCACCAAGAAGGAGGGCTGCACCAT CGCACGGTGGTGCAGGGCACCAAGCAGGAGGGCTGCACCAT < 41bp 0.841849170287621 0.495131557501782 0.2894401 0.13371432 prediction 0.683698340575242 Functional Loss - FZD2 ENSG00000180340 CDS Human protein_coding chr17:42636022 chr17:42636026 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_50386 0 0 0 0 0 exosome 0.500231643923145 0.500231643916133 0 1.4024337247065e-11 hm5C_site_45738 DeepMRMD:0;iRNA_m5C:1.4024337247065e-11 45739 chr16 57597831 57597831 1 + G T LUAD 57597828 + 57597808 57597848 41 GAGCTGACCCGGGACGCCTGCAAGACCCGCCCCAGGGAGCT GAGCTGACCCGGGACGCCTGCAATACCCGCCCCAGGGAGCT < 41bp 0.841814386218207 0.481470140830207 0.37017506 0.04466918 prediction 0.683628772436413 Functional Loss - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57597828 chr16:57597831 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_50387 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_45739 DeepMRMD:0;iRNA_m5C:0 45740 chr11 89774388 89774388 1 + G T BRCA 89774385 + 89774365 89774405 41 TTCACCTCGGGCAAATATTACTGGGAGGTCCATGTAGGGGA TTCACCTCGGGCAAATATTACTGTGAGGTCCATGTAGGGGA < 41bp 0.845995946945958 0.504191605143326 0.8918648 0.83386827 prediction 0.683608683605264 Functional Loss - TRIM49C ENSG00000204449 CDS Human protein_coding chr11:89774385 chr11:89774388 nonsynonymous SNV 0.034 4 24 hm5C_associated_SNPs_50388 0 0 0 0 0 unknown 0.500231643950248 0.5002316439211 0.11599306 5.82944803539931e-11 hm5C_site_45740 DeepMRMD:0.11599306;iRNA_m5C:5.82944803539931e-11 45741 chr2 233243731 233243731 1 + G T GBM 233243728 + 233243708 233243748 41 ACCGCGAGGCAGCCGAGGCCCTGGGTGCCGCCAAGAAGCTG ACCGCGAGGCAGCCGAGGCCCTGTGTGCCGCCAAGAAGCTG < 41bp 0.841764426260453 0.490025408315112 0.2796048 0.077072054 prediction 0.683528852520907 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233243728 chr2:233243731 nonsynonymous SNV 0.264 3 24 hm5C_associated_SNPs_50389 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_45741 DeepMRMD:0;iRNA_m5C:0 45742 chr17 48913377 48913377 1 + G T CHOL 48913374 + 48913354 48913394 41 TGCTGCTGCTGCTGCTACTGCTCGGGGTGCCCCCGCGAAGC TGCTGCTGCTGCTGCTACTGCTCTGGGTGCCCCCGCGAAGC < 41bp 0.84169501519095 0.494334896486153 0.34889084 0.26410323 prediction 0.6833900303819 Functional Loss - WFIKKN2 ENSG00000173714 CDS Human protein_coding chr17:48913374 chr17:48913377 nonsynonymous SNV 0.316 0 24 hm5C_associated_SNPs_50390 0 0 0 0 0 exosome 0.500231643921092 0.500232142569412 0 0 hm5C_site_45742 DeepMRMD:0;iRNA_m5C:0 45743 chr16 31230652 31230652 1 + G T LUAD 31230649 + 31230629 31230669 41 GGGGGGCCGTGGGGGAGCAGCTGGGCAAGATGCGGGTGTTC GGGGGGCCGTGGGGGAGCAGCTGTGCAAGATGCGGGTGTTC < 41bp 0.862412226448384 0.520737444840589 0.88876307 0.88134444 prediction 0.68334956321559 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31230649 chr16:31230652 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_50391 0 0 1 0 1 exosome 0.500231643699726 0.500231643921092 0.01483726 0 hm5C_site_45743 DeepMRMD:0.01483726;iRNA_m5C:0 45744 chr20 19870240 19870240 1 + G T LIHC 19870237 + 19870217 19870257 41 CGGCGTGCAGTGGAGCCTCGCTGGGGGAAATGACAGCTTGG CGGCGTGCAGTGGAGCCTCGCTGTGGGAAATGACAGCTTGG < 41bp 0.841646917337703 0.483337587610117 0.906224 0.3227758 prediction 0.683293834675407 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19870237 chr20:19870240 nonsynonymous SNV 0.870 1 24 hm5C_associated_SNPs_50392 0 0 0 0 1 Nucleus 0.500231775815857 0.500233601636628 0.812448 0 hm5C_site_45744 DeepMRMD:0.812448;iRNA_m5C:0 45745 chr1 12066687 12066687 1 + G T LUSC 12066684 + 12066664 12066704 41 CAGGAGGAGTTCATGGTTTCCATGGTTACCGGCCTGGCCTC CAGGAGGAGTTCATGGTTTCCATTGTTACCGGCCTGGCCTC < 41bp 0.841645351446249 0.482456817868851 0.37100393 0.12015906 prediction 0.683290702892498 Functional Loss - MFN2 ENSG00000116688 CDS Human protein_coding chr1:12066684 chr1:12066687 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_50393 0 0 1 0 2 Ribosome 0.500231643960374 0.500231644295791 0 0 hm5C_site_45745 DeepMRMD:0;iRNA_m5C:0 45746 chr17 72937718 72937718 1 + G T UCEC 72937715 + 72937695 72937735 41 TGGCCCTGAATGTGGTGTTCCTGGGTGGCGCCTTCATCTGC TGGCCCTGAATGTGGTGTTCCTGTGTGGCGCCTTCATCTGC < 41bp 0.84160882693559 0.483809627839939 0.9004107 0.2755791 prediction 0.683217653871179 Functional Loss - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72937715 chr17:72937718 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_50394 0 0 0 0 0 unknown 0.509238499621428 0.500231662911949 0.8008214 0.0180136734189582 hm5C_site_45746 DeepMRMD:0.8008214;iRNA_m5C:0.0180136734189582 45747 chrX 129148576 129148576 1 + G T UCEC 129148573 + 129148553 129148593 41 AGTCACCGCCACAGCTGGAACGAGAGATGGCCTCTCCACCT AGTCACCGCCACAGCTGGAACGATAGATGGCCTCTCCACCT < 41bp 0.841588987078522 0.483212276292537 0.92451787 0.3607388 prediction 0.683177974157045 Functional Loss - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129148573 chrX:129148576 stopgain 1.000 0 24 hm5C_associated_SNPs_50395 0 0 0 0 0 Cytosol 0.500231643921091 0.500231643924618 0.84903574 0 hm5C_site_45747 DeepMRMD:0.84903574;iRNA_m5C:0 45748 chr13 24465842 24465842 1 + A C rs377159288 24465838 + 24465818 24465858 41 GAAAGCACTTTTTGGCAAGACTAGAGTCTCACCGATTTTCC GAAAGCACTTTTTGGCAAGACTAGCGTCTCACCGATTTTCC < 41bp 0.866268754516308 0.52472847462256 0.108420074 0.063726276 prediction 0.683080559787497 Functional Loss - C1QTNF9B;PCOTH ENSG00000205863 CDS Human protein_coding chr13:24465838 chr13:24465842 synonymous SNV . 0 25 hm5C_associated_SNPs_50396 0 0 0 0 1 unknown 0.500231643994935 0.500231643925361 0 1.39149136657579e-10 hm5C_site_45748 DeepMRMD:0;iRNA_m5C:1.39149136657579e-10 45749 chr20 19955572 19955572 1 + G T BLCA 19955569 + 19955549 19955589 41 AGGACTCCCAACGCGAATGGCACGGAGCGGACTCGGTCCCC AGGACTCCCAACGCGAATGGCACTGAGCGGACTCGGTCCCC < 41bp 0.841462633721431 0.484179443700367 0.28102383 0.04776603 prediction 0.682925267442862 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19955569 chr20:19955572 synonymous SNV . 0 24 hm5C_associated_SNPs_50397 0 0 0 0 0 Nucleus 0.500231643924559 0.500231577993286 0 1.31862546881578e-07 hm5C_site_45749 DeepMRMD:0;iRNA_m5C:1.31862546881578e-07 45750 chr9 37761989 37761989 1 + G T UCEC 37761986 + 37761966 37762006 41 AGTCACCTGTGCTGCAGGGGCAAGAAGGCATCCTAGAGGAG AGTCACCTGTGCTGCAGGGGCAATAAGGCATCCTAGAGGAG < 41bp 0.850399417081435 0.508937750718356 0.43933523 0.3916945 prediction 0.682923332726159 Functional Loss - TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37761986 chr9:37761989 stopgain 0.009 0 24 hm5C_associated_SNPs_50398 0 0 0 0 1 chromatin 0.500231643921074 0.500231643913831 0 1.44859679807041e-11 hm5C_site_45750 DeepMRMD:0;iRNA_m5C:1.44859679807041e-11 45751 chr1 32653571 32653571 1 + A C STAD 32653567 + 32653547 32653587 41 GTCCCCAGCTGGAGGAGCACCGGAATTCACAGAAGCAGATG GTCCCCAGCTGGAGGAGCACCGGACTTCACAGAAGCAGATG < 41bp 0.866353765343949 0.524899581625005 0.7744021 0.7589158 prediction 0.682908367437889 Functional Loss - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32653567 chr1:32653571 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_50399 0 0 1 0 1 Nucleus 0.500231643921173 0.500257634009193 0.0309725999999999 0 hm5C_site_45751 DeepMRMD:0.0309725999999999;iRNA_m5C:0 45752 chr5 178391913 178391913 1 + G T LUSC 178391910 + 178391890 178391930 41 CTCTTCACAGTGATCAAAGTCAGGGATTTCAACCTAGCAAA CTCTTCACAGTGATCAAAGTCAGTGATTTCAACCTAGCAAA < 41bp 0.857560764963899 0.516112100856727 0.92621565 0.22326851 prediction 0.682897328214342 Functional Loss - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178391910 chr5:178391913 stopgain 0.018 0 24 hm5C_associated_SNPs_50400 0 0 0 0 0 exosome 0.500231643900472 0.500231564708697 0.8524313 1.58383551163155e-07 hm5C_site_45752 DeepMRMD:0.8524313;iRNA_m5C:1.58383551163155e-07 45753 chr2 200820959 200820959 1 + G T UCEC 200820956 + 200820936 200820976 41 TTCAGCATCACAGAGTTCTCCGAGGGAGCGAAGCAGGTTTG TTCAGCATCACAGAGTTCTCCGATGGAGCGAAGCAGGTTTG < 41bp 0.847867913686766 0.50644559632891 0.92078984 0.3625981 prediction 0.682844634715712 Functional Loss - MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200820956 chr2:200820959 nonsynonymous SNV 0.825 0 24 hm5C_associated_SNPs_50401 0 0 0 0 1 unknown 0.500231643983642 0.500237992263159 0.84157968 0 hm5C_site_45753 DeepMRMD:0.84157968;iRNA_m5C:0 45754 chr5 140572791 140572791 1 + G T LUAD 140572788 + 140572768 140572808 41 CTGGATGGTGGGTCTCCATCCAGGTCTGGGACCTCTACTGT CTGGATGGTGGGTCTCCATCCAGTTCTGGGACCTCTACTGT < 41bp 0.841422018487169 0.492537751755577 0.7871778 0.21546188 prediction 0.682844036974337 Functional Loss - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140572788 chr5:140572791 nonsynonymous SNV 0.057 2 24 hm5C_associated_SNPs_50402 0 0 0 0 0 exosome 0.50023164392227 0.500231643921109 0.5743556 2.3223645229109e-12 hm5C_site_45754 DeepMRMD:0.5743556;iRNA_m5C:2.3223645229109e-12 45755 chr11 63990660 63990660 1 + A C BLCA 63990656 + 63990636 63990676 41 GGAATGTCAACTGGGACATCCGGCAGGTGGGCCCAGACCCA GGAATGTCAACTGGGACATCCGGCCGGTGGGCCCAGACCCA < 41bp 0.841371681685726 0.464121615056011 0.5431869 0.3217574 prediction 0.682743363371452 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63990656 chr11:63990660 nonsynonymous SNV 0.980 3 25 hm5C_associated_SNPs_50403 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.0863738000000001 0 hm5C_site_45755 DeepMRMD:0.0863738000000001;iRNA_m5C:0 45756 chr16 77859223 77859223 1 + G T UCEC 77859220 + 77859200 77859240 41 ACACCAGTGGAGTTTGTCTACAAGATCCCGGATGACATGAG ACACCAGTGGAGTTTGTCTACAATATCCCGGATGACATGAG < 41bp 0.841370645271399 0.499553284740946 0.25064164 0.09735426 prediction 0.682741290542799 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77859220 chr16:77859223 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50404 0 0 0 0 1 Endoplasmic reticulum 0.500231640951899 0.500231643920824 0 0 hm5C_site_45756 DeepMRMD:0;iRNA_m5C:0 45757 chr19 2808314 2808314 1 + A C rs556378977 2808310 + 2808290 2808330 41 CTGCGGCAGGATGGGAGCCGCCAGATCGCCATCGCGGCCAT CTGCGGCAGGATGGGAGCCGCCAGCTCGCCATCGCGGCCAT < 41bp 0.841351730176166 0.490552972852192 0.7787902 0.29651782 prediction 0.682703460352332 Functional Loss - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2808310 chr19:2808314 nonsynonymous SNV 0.417 0 25 hm5C_associated_SNPs_50405 0 0 1 0 1 Ribosome 0.500251373588141 0.500236300733437 0.5575804 3.01457094082913e-05 hm5C_site_45757 DeepMRMD:0.5575804;iRNA_m5C:3.01457094082913e-05 45758 chr12 113826320 113826320 1 + G T LUAD 113826317 + 113826297 113826337 41 CTGCTGGCGGCCAGCGGTCCCACGTGGGACCAGGTGCCCCC CTGCTGGCGGCCAGCGGTCCCACTTGGGACCAGGTGCCCCC < 41bp 0.841577466263021 0.50023856706484 0.22269425 0.018277436 prediction 0.682677798396363 Functional Loss - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113826317 chr12:113826320 synonymous SNV . 0 24 hm5C_associated_SNPs_50406 0 0 1 0 1 Nucleus 0.500231634151632 0.500231643917497 0 0 hm5C_site_45758 DeepMRMD:0;iRNA_m5C:0 45759 chr1 149760153 149760153 1 + G T UCEC 149760150 + 149760130 149760170 41 AAAGCATCGCTACACATCAGCAGGAATATCTGTCACTGTGA AAAGCATCGCTACACATCAGCAGTAATATCTGTCACTGTGA < 41bp 0.841330910846541 0.489449595785195 0.9035177 0.28227693 prediction 0.682661821693082 Functional Loss - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149760150 chr1:149760153 nonsynonymous SNV 0.464 0 24 hm5C_associated_SNPs_50407 0 0 0 5 0 exosome 0.500231409499098 0.500231681406951 0.8070354 0 hm5C_site_45759 DeepMRMD:0.8070354;iRNA_m5C:0 45760 chr2 32983434 32983434 1 + G T UCEC 32983431 + 32983411 32983451 41 ACTGCTTGCTTGGAGATGTCCTCGGAGACCATTCTTGCTAT ACTGCTTGCTTGGAGATGTCCTCTGAGACCATTCTTGCTAT < 41bp 0.842908397686179 0.501590635559519 0.22352466 0.06954491 prediction 0.68263552425332 Functional Loss - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32983431 chr2:32983434 stopgain 0.908 0 24 hm5C_associated_SNPs_50408 0 0 1 0 1 Nucleus 0.500231668315285 0.500233234364084 0 0 hm5C_site_45760 DeepMRMD:0;iRNA_m5C:0 45761 chr1 15956969 15956969 1 + G T UCEC 15956966 + 15956946 15956986 41 TGGACAATCCAGCCTTGCTCCGAGATATGTTGCTGGCCAAC TGGACAATCCAGCCTTGCTCCGATATATGTTGCTGGCCAAC < 41bp 0.850467305914435 0.50915229405612 0.82406056 0.2559958 prediction 0.68263002371663 Functional Loss - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15956966 chr1:15956969 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_50409 0 0 1 0 1 Ribosome 0.500231644063716 0.500231653834461 0.64812112 0 hm5C_site_45761 DeepMRMD:0.64812112;iRNA_m5C:0 45762 chr2 131520682 131520682 1 + G T LUAD 131520679 + 131520659 131520699 41 CCAATCCCGGCTGGACACAGCTGGGCTCGCTGAGCTGCCCC CCAATCCCGGCTGGACACAGCTGTGCTCGCTGAGCTGCCCC < 41bp 0.841296076813326 0.479188113956411 0.9175248 0.82035965 prediction 0.682592153626652 Functional Loss - AMER3 ENSG00000178171 CDS Human protein_coding chr2:131520679 chr2:131520682 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_50410 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921095 0.1943303 0 hm5C_site_45762 DeepMRMD:0.1943303;iRNA_m5C:0 45763 chr1 8386070 8386070 1 + A C CESC 8386066 + 8386046 8386086 41 ACGTGTGCAGCCCCGCAGACCAGGACCGAGGCCTGAACATC ACGTGTGCAGCCCCGCAGACCAGGCCCGAGGCCTGAACATC < 41bp 0.864934356926571 0.523652986038076 0.52547467 0.35427123 prediction 0.682562741776991 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8386066 chr1:8386070 nonsynonymous SNV 0.980 4 25 hm5C_associated_SNPs_50411 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.0509493400000001 0 hm5C_site_45763 DeepMRMD:0.0509493400000001;iRNA_m5C:0 45764 chrX 30261098 30261098 1 + G T LIHC 30261095 + 30261075 30261115 41 AGAGCTCATGCAGAAACCAGCAAGATGAAAGTCCTGGAGTT AGAGCTCATGCAGAAACCAGCAATATGAAAGTCCTGGAGTT < 41bp 0.847244401864751 0.505974311687225 0.9074557 0.31703284 prediction 0.682540180355052 Functional Loss - MAGEB4 ENSG00000120289 CDS Human protein_coding chrX:30261095 chrX:30261098 nonsynonymous SNV 0.963 3 24 hm5C_associated_SNPs_50412 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921093 0.8149114 0 hm5C_site_45764 DeepMRMD:0.8149114;iRNA_m5C:0 45765 chr19 42814072 42814072 1 + G T LUAD 42814069 + 42814049 42814089 41 AAGCCCTCCCCAAGCCCAGGCAGGGCCCAGGAACCAGCCCC AAGCCCTCCCCAAGCCCAGGCAGTGCCCAGGAACCAGCCCC < 41bp 0.841253948068565 0.477509064062782 0.4289359 0.09663835 prediction 0.682507896137129 Functional Loss - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814069 chr19:42814072 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50413 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_45765 DeepMRMD:0;iRNA_m5C:0 45766 chr9 139687410 139687410 1 + A C rs374673899 139687406 + 139687386 139687426 41 ACCCCAGTCGTATCCTCTGTCCGCATGTGTGGCCAGGCCTG ACCCCAGTCGTATCCTCTGTCCGCCTGTGTGGCCAGGCCTG < 41bp 0.842084814357296 0.500834194078642 0.19407377 0.027909696 prediction 0.682501240557309 Functional Loss - TMEM141 ENSG00000244187 UTR3 Human protein_coding chr9:139687406 chr9:139687410 . . 0 25 hm5C_associated_SNPs_50414 0 0 1 0 0 Ribosome 0.500231654989889 0.500231643927954 0 2.21238700692794e-08 hm5C_site_45766 DeepMRMD:0;iRNA_m5C:2.21238700692794e-08 45767 chr2 14774380 14774380 1 + G T UCEC 14774377 + 14774357 14774397 41 AGTTTTCCGCCTTTCGGGGCCAGGAATGCATCTTTTCCAAA AGTTTTCCGCCTTTCGGGGCCAGTAATGCATCTTTTCCAAA < 41bp 0.844250834203257 0.503024970331893 0.7834039 0.3375023 prediction 0.682451727742729 Functional Loss - FAM84A ENSG00000162981 CDS Human protein_coding chr2:14774377 chr2:14774380 stopgain 1.000 1 24 hm5C_associated_SNPs_50415 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921091 0.5668078 1.99840144432528e-15 hm5C_site_45767 DeepMRMD:0.5668078;iRNA_m5C:1.99840144432528e-15 45768 chr7 142561910 142561910 1 + G T LUAD 142561907 + 142561887 142561927 41 CTGTGCGGGCATGCTCCAGCCTGGGTGTGAGCGGCGGCACC CTGTGCGGGCATGCTCCAGCCTGTGTGTGAGCGGCGGCACC < 41bp 0.860614575228316 0.519394204094408 0.8017847 0.16348651 prediction 0.682440742267815 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561907 chr7:142561910 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_50416 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231680670836 0.6035694 0 hm5C_site_45768 DeepMRMD:0.6035694;iRNA_m5C:0 45769 chr8 99961349 99961349 1 + G T HNSC 99961346 + 99961326 99961366 41 TGCACATGAACCACTGGACGCTGGGGTATCCCAATGTGCAC TGCACATGAACCACTGGACGCTGTGGTATCCCAATGTGCAC < 41bp 0.857280630882093 0.516074552097947 0.33736014 0.010909468 prediction 0.682412157568292 Functional Loss - OSR2 ENSG00000164920 CDS Human protein_coding chr8:99961346 chr8:99961349 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50417 0 0 1 0 0 exosome 0.50023188388986 0.5002285845793 0 6.59862111995757e-06 hm5C_site_45769 DeepMRMD:0;iRNA_m5C:6.59862111995757e-06 45770 chr12 58140483 58140483 1 + G T COAD 58140480 + 58140460 58140500 41 ACCTCACAACCCTGTATCAACAAGATTATGATTTCTGCACT ACCTCACAACCCTGTATCAACAATATTATGATTTCTGCACT < 41bp 0.841167650969746 0.498426583535156 0.23505846 0.13074923 prediction 0.682335301939492 Functional Loss - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58140480 chr12:58140483 nonsynonymous SNV 0.613 2 24 hm5C_associated_SNPs_50418 0 0 1 0 1 Ribosome 0.500231643921092 0.5002316439228 0 0 hm5C_site_45770 DeepMRMD:0;iRNA_m5C:0 45771 chr19 36237348 36237348 1 + G T LUSC 36237345 + 36237325 36237365 41 TTTGCTTTCCTGCCTTTTCTCTGGTTGGTCAACATCTTCTG TTTGCTTTCCTGCCTTTTCTCTGTTTGGTCAACATCTTCTG < 41bp 0.85497677110822 0.513814141456365 0.3292532 0.06186667 prediction 0.682325259303711 Functional Loss - PSENEN ENSG00000188223;ENSG00000205155 CDS Human other chr19:36237345 chr19:36237348 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_50419 0 0 1 0 2 Ribosome 0.500231643921137 0.500231645874836 0 0 hm5C_site_45771 DeepMRMD:0;iRNA_m5C:0 45772 chrX 82763575 82763575 1 + G T LUAD 82763572 + 82763552 82763592 41 AGCCCCCTGGACCAGCAGGACGTGAAGCCCGGGCGCGAAGA AGCCCCCTGGACCAGCAGGACGTTAAGCCCGGGCGCGAAGA < 41bp 0.841159255232979 0.493233485555804 0.3696735 0.4932234 prediction 0.682318510465959 Functional Loss - POU3F4 ENSG00000196767 CDS Human protein_coding chrX:82763572 chrX:82763575 synonymous SNV . 0 24 hm5C_associated_SNPs_50420 0 0 0 0 0 unknown 0.500231643791222 0.500231643982818 0 0 hm5C_site_45772 DeepMRMD:0;iRNA_m5C:0 45773 chr19 36277658 36277658 1 + A C ESCA 36277654 + 36277634 36277674 41 TCCCGCACCTCCCGCCAGCCCAGCACCCCCCGCCCCTGCCT TCCCGCACCTCCCGCCAGCCCAGCCCCCCCCGCCCCTGCCT < 41bp 0.841098275060699 0.467476118635479 0.5160276 0.5115671 prediction 0.682196550121398 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36277654 chr19:36277658 synonymous SNV . 0 25 hm5C_associated_SNPs_50421 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.00892099999999996 0 hm5C_site_45773 DeepMRMD:0.00892099999999996;iRNA_m5C:0 45774 chr19 4359211 4359211 1 + G T BLCA 4359208 + 4359188 4359228 41 CCCCTGACCTCGTGAGGCTCCAGGAACCCTGGAGCCAGGAG CCCCTGACCTCGTGAGGCTCCAGTAACCCTGGAGCCAGGAG < 41bp 0.844473944133705 0.503375799360762 0.75074244 0.14750037 prediction 0.682196289545886 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4359208 chr19:4359211 stopgain 0.980 1 24 hm5C_associated_SNPs_50422 0 0 1 0 1 Ribosome 0.500231651748658 0.500231655244103 0.50148488 0 hm5C_site_45774 DeepMRMD:0.50148488;iRNA_m5C:0 45775 chr16 21261982 21261982 1 + G T HNSC 21261979 + 21261959 21261999 41 GAAGAATTCCTGCCTATCTTCAAGAGAGAGCAGATTGATCT GAAGAATTCCTGCCTATCTTCAATAGAGAGCAGATTGATCT < 41bp 0.842193458628346 0.501095603081105 0.57551736 0.17430723 prediction 0.682195711094481 Functional Loss - ANKS4B ENSG00000175311 CDS Human protein_coding chr16:21261979 chr16:21261982 nonsynonymous SNV 0.935 0 24 hm5C_associated_SNPs_50423 0 0 1 0 0 exosome 0.500231643921081 0.500231643921092 0.15103472 0 hm5C_site_45775 DeepMRMD:0.15103472;iRNA_m5C:0 45776 chr19 34263452 34263452 1 + G T UCEC 34263449 + 34263429 34263469 41 CACCGTCTCAGCACCTACACCAAGATGCTCTTTGTCCGCGA CACCGTCTCAGCACCTACACCAATATGCTCTTTGTCCGCGA < 41bp 0.850511312217301 0.509421515289168 0.52782476 0.062281966 prediction 0.682179593856266 Functional Loss - CHST8 ENSG00000124302 CDS Human protein_coding chr19:34263449 chr19:34263452 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_50424 0 0 0 0 0 exosome 0.500229048666478 0.500231625564197 0.05564952 0 hm5C_site_45776 DeepMRMD:0.05564952;iRNA_m5C:0 45777 chr12 121154483 121154483 1 + A C STAD 121154479 + 121154459 121154499 41 TGGAGACGTGGACATCAGCGCAGGACGTTTTGTCCGCTATC TGGAGACGTGGACATCAGCGCAGGCCGTTTTGTCCGCTATC < 41bp 0.858911952637407 0.517838870572047 0.7527963 0.66632736 prediction 0.68214616413072 Functional Loss - UNC119B ENSG00000175970 CDS Human protein_coding chr12:121154479 chr12:121154483 synonymous SNV . 0 25 hm5C_associated_SNPs_50425 0 0 1 0 2 Ribosome 0.500231640124483 0.500231126395351 0.17293788 1.0274582649128e-06 hm5C_site_45777 DeepMRMD:0.17293788;iRNA_m5C:1.0274582649128e-06 45778 chr2 24245354 24245354 1 + G T SARC 24245351 + 24245331 24245371 41 GTACACATGCCTCCCAGCTACACGACCACGTCCAGGGCCTG GTACACATGCCTCCCAGCTACACTACCACGTCCAGGGCCTG < 41bp 0.841072758142232 0.487768503295478 0.11543539 0.03211549 prediction 0.682145516284464 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24245351 chr2:24245354 nonsynonymous SNV 0.038 1 24 hm5C_associated_SNPs_50426 0 0 1 0 2 Endoplasmic reticulum 0.500231762536655 0.500232034097369 0 0 hm5C_site_45778 DeepMRMD:0;iRNA_m5C:0 45779 chr9 99694528 99694528 1 + G T ESCA 99694525 + 99694505 99694545 41 GGAACGCTGGGCCATGGCCACAAGGGGCTCATGGAGAGGGC GGAACGCTGGGCCATGGCCACAATGGGCTCATGGAGAGGGC < 41bp 0.859729609731095 0.518712195200789 0.887621 0.2756279 prediction 0.682034829060613 Functional Loss - NUTM2G ENSG00000188152 CDS Human protein_coding chr9:99694525 chr9:99694528 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_50427 0 0 0 0 0 chromatin 0.500231643921095 0.500231643861013 0.775242 1.20163656802674e-10 hm5C_site_45779 DeepMRMD:0.775242;iRNA_m5C:1.20163656802674e-10 45780 chr1 1387472 1387472 1 + A C UCEC 1387468 + 1387448 1387488 41 GGAAGCAGGAGGAGTCCGTGCAGAAGCACCATCAGACCTTC GGAAGCAGGAGGAGTCCGTGCAGACGCACCATCAGACCTTC < 41bp 0.841016958940511 0.476592258261283 0.31682333 0.2865126 prediction 0.682033917881022 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387468 chr1:1387472 nonsynonymous SNV 0.516 3 25 hm5C_associated_SNPs_50428 0 0 0 0 2 Nucleus 0.500231643925068 0.500231643825027 0 2.00081951007292e-10 hm5C_site_45780 DeepMRMD:0;iRNA_m5C:2.00081951007292e-10 45781 chr11 65617686 65617686 1 + G T CESC 65617683 + 65617663 65617703 41 GAAAAGCTACAGAAATTGGGCGAGGGGGACAGCTCTGTCAC GAAAAGCTACAGAAATTGGGCGATGGGGACAGCTCTGTCAC < 41bp 0.860323759861504 0.519317163442581 0.90687406 0.5528414 prediction 0.682013192837846 Functional Loss - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65617683 chr11:65617686 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_50429 0 0 0 1 1 nucleoplasm 0.50023164392106 0.500231635541889 0.70806532 1.67583422694406e-08 hm5C_site_45781 DeepMRMD:0.70806532;iRNA_m5C:1.67583422694406e-08 45782 chr14 20528790 20528790 1 + A C rs45439600 20528786 + 20528766 20528806 41 CTTGCATTGAAACATACACCCTGGAATTATTTGTCATTGCT CTTGCATTGAAACATACACCCTGGCATTATTTGTCATTGCT < 41bp 0.840981542080154 0.495813605321168 0.3932919 0.16788208 prediction 0.681963084160307 Functional Loss - OR4L1 ENSG00000176246 CDS Human protein_coding chr14:20528786 chr14:20528790 nonsynonymous SNV 0.951 1 25 hm5C_associated_SNPs_50430 0 0 0 0 0 unknown 0.500231644050037 0.500231641747194 0 4.6056853886256e-09 hm5C_site_45782 DeepMRMD:0;iRNA_m5C:4.6056853886256e-09 45783 chrX 26212887 26212887 1 + G T LUSC 26212884 + 26212864 26212904 41 TGTGCCACTGAAGAGGAGGTCTGGGAGTTCCTGGGTCTGTT TGTGCCACTGAAGAGGAGGTCTGTGAGTTCCTGGGTCTGTT < 41bp 0.849880770003197 0.508919057446023 0.83230317 0.40432534 prediction 0.681923425114348 Functional Loss - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26212884 chrX:26212887 nonsynonymous SNV 0.096 3 24 hm5C_associated_SNPs_50431 0 0 0 0 0 unknown 0.500231643921092 0.50023164392089 0.66460634 4.04565270173407e-13 hm5C_site_45783 DeepMRMD:0.66460634;iRNA_m5C:4.04565270173407e-13 45784 chr15 65219136 65219136 1 + G T HNSC 65219133 + 65219113 65219153 41 CGTTTCACAGGGCAGCTGAGCACGGGCAGCTGGATGCTCTG CGTTTCACAGGGCAGCTGAGCACTGGCAGCTGGATGCTCTG < 41bp 0.862825316922438 0.521867349500384 0.88846385 0.68526673 prediction 0.681915934844109 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65219133 chr15:65219136 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_50432 0 0 0 0 2 nucleoplasm 0.500231644727827 0.500231643984933 0.40639424 1.4857866048601e-09 hm5C_site_45784 DeepMRMD:0.40639424;iRNA_m5C:1.4857866048601e-09 45785 chr5 140573701 140573701 1 + G T KIRC 140573698 + 140573678 140573718 41 CGCTGGACTACGAGGCCCTGCAGGCTTTCGAGTTCCGCGTG CGCTGGACTACGAGGCCCTGCAGTCTTTCGAGTTCCGCGTG < 41bp 0.857400882587136 0.516447245095185 0.8925338 0.5369123 prediction 0.681907274983902 Functional Loss - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573698 chr5:140573701 nonsynonymous SNV 0.045 0 24 hm5C_associated_SNPs_50433 0 0 0 0 0 exosome 0.500231710436975 0.500231643921139 0.711243 1.33031671234463e-07 hm5C_site_45785 DeepMRMD:0.711243;iRNA_m5C:1.33031671234463e-07 45786 chr1 110766493 110766493 1 + A C SKCM 110766489 + 110766469 110766509 41 GTGATACCAGCCCCCCTGCCCGGGAAGAGGGTATGATCGAG GTGATACCAGCCCCCCTGCCCGGGCAGAGGGTATGATCGAG < 41bp 0.840943066249216 0.483494550263785 0.53203267 0.5881197 prediction 0.681886132498432 Functional Loss - KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110766489 chr1:110766493 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_50434 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_45786 DeepMRMD:0;iRNA_m5C:0 45787 chr1 234509501 234509501 1 + G T LUSC 234509498 + 234509478 234509518 41 GTCCCTTACTGTCCCCGAGCCGCGGGTTCCTCTTGTGCAAA GTCCCTTACTGTCCCCGAGCCGCTGGTTCCTCTTGTGCAAA < 41bp 0.840916065030733 0.495790923970364 0.8939084 0.2145355 prediction 0.681832130061465 Functional Loss - COA6 ENSG00000168275 CDS Human protein_coding chr1:234509498 chr1:234509501 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_50435 0 0 0 0 1 Cytosol 0.500231650400231 0.500231643896856 0.7878168 1.30067501213915e-08 hm5C_site_45787 DeepMRMD:0.7878168;iRNA_m5C:1.30067501213915e-08 45788 chr10 15145430 15145430 1 + G T UCEC 15145427 + 15145407 15145447 41 CGCTGGAGCGCTCTGGAGAGCGAGGATATGCACTTCATCCT CGCTGGAGCGCTCTGGAGAGCGATGATATGCACTTCATCCT < 41bp 0.840867828668233 0.485639134906042 0.865672 0.08208811 prediction 0.681735657336465 Functional Loss - RPP38 ENSG00000152464 CDS Human protein_coding chr10:15145427 chr10:15145430 nonsynonymous SNV 0.886 0 24 hm5C_associated_SNPs_50436 0 0 1 0 0 exosome 0.500231643934835 0.500231643920088 0.731344 2.9493962827587e-11 hm5C_site_45788 DeepMRMD:0.731344;iRNA_m5C:2.9493962827587e-11 45789 chr12 56551301 56551301 1 + G T UCEC 56551298 + 56551278 56551318 41 GAGACCGTTCTGGCAGGACACGAGGACAGCAACGGCTGCAT GAGACCGTTCTGGCAGGACACGATGACAGCAACGGCTGCAT < 41bp 0.846759188250456 0.50593676115533 0.8920372 0.19629285 prediction 0.681644854190252 Functional Loss - MYL6B ENSG00000196465 CDS Human protein_coding chr12:56551298 chr12:56551301 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50437 0 0 1 0 1 Cytosol 0.500231631377116 0.500231645138105 0.7840744 0 hm5C_site_45789 DeepMRMD:0.7840744;iRNA_m5C:0 45790 chr14 51057742 51057742 1 + A C UCS 51057738 + 51057718 51057758 41 TGGATCTGAGCGAGAGACCACAGGAATTCAGATATGGAGTG TGGATCTGAGCGAGAGACCACAGGCATTCAGATATGGAGTG < 41bp 0.856503888029344 0.515707913887558 0.7670667 0.35437626 prediction 0.681591948283572 Functional Loss - ATL1 ENSG00000198513 CDS Human protein_coding chr14:51057738 chr14:51057742 synonymous SNV . 0 25 hm5C_associated_SNPs_50438 0 0 1 0 2 chromatin 0.500231634186167 0.500231636996019 0.5341334 0 hm5C_site_45790 DeepMRMD:0.5341334;iRNA_m5C:0 45791 chr9 138011775 138011775 1 + G T LUAD 138011772 + 138011752 138011792 41 AGCTACCCCAAGCGCAGCGCCGGGGAGGCCTTCATCATCTG AGCTACCCCAAGCGCAGCGCCGGTGAGGCCTTCATCATCTG < 41bp 0.862318766380501 0.521529116485123 0.70473534 0.21815297 prediction 0.681579299790755 Functional Loss - OLFM1 ENSG00000130558 CDS Human protein_coding chr9:138011772 chr9:138011775 synonymous SNV . 0 24 hm5C_associated_SNPs_50439 0 0 1 0 0 Endoplasmic reticulum 0.50023164392108 0.500231646405407 0.40947068 0 hm5C_site_45791 DeepMRMD:0.40947068;iRNA_m5C:0 45792 chr17 19319165 19319165 1 + G T BLCA 19319162 + 19319142 19319182 41 GAGATCAGACCTTGGAGGCACTGGAAGCTGAGCTGCAGGCC GAGATCAGACCTTGGAGGCACTGTAAGCTGAGCTGCAGGCC < 41bp 0.850884043744567 0.510117280968397 0.74138653 0.34254974 prediction 0.68153352555234 Functional Loss - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19319162 chr17:19319165 stopgain 0.971 0 24 hm5C_associated_SNPs_50440 0 0 0 0 0 exosome 0.50023164377627 0.500231643919959 0.48277306 0 hm5C_site_45792 DeepMRMD:0.48277306;iRNA_m5C:0 45793 chr19 50983931 50983931 1 + G T LIHC 50983928 + 50983908 50983948 41 GCGTGTCGGTGGTGACGCACCCCGGGGGCTGCCGGGGCCAT GCGTGTCGGTGGTGACGCACCCCTGGGGCTGCCGGGGCCAT < 41bp 0.847267385235645 0.506538515664532 0.3576813 0.09739575 prediction 0.681457739142227 Functional Loss - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983928 chr19:50983931 nonsynonymous SNV 0.740 4 24 hm5C_associated_SNPs_50441 0 0 0 0 1 Cytosol 0.500231643917748 0.500231644758429 0 0 hm5C_site_45793 DeepMRMD:0;iRNA_m5C:0 45794 chr17 79202743 79202743 1 + C A rs145674229 79202746 - 79202726 79202766 41 GGCTCAGAGCCGTCAGCTTTCGCGTTCCTGAACGCCTGACC GGCTCAGAGCCGTCAGCTTTCGCTTTCCTGAACGCCTGACC < 41bp 0.840705932660979 0.49537405539771 0.8360408 0.3444438 prediction 0.681411865321959 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79202746 chr17:79202743 synonymous SNV . 0 24 hm5C_associated_SNPs_50442 0 0 0 0 0 chromatin 0.500231635284248 0.500664327653666 0.6720816 0 hm5C_site_45794 DeepMRMD:0.6720816;iRNA_m5C:0 45795 chrX 153608673 153608673 1 + G T LUAD 153608670 + 153608650 153608690 41 CCCGAGTCTGCCGGCCCGTCCAGGGCTGTCCGCCAGTCAGT CCCGAGTCTGCCGGCCCGTCCAGTGCTGTCCGCCAGTCAGT < 41bp 0.877752677433979 0.537062063226891 0.92549837 0.46659613 prediction 0.681381228414175 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153608670 chrX:153608673 nonsynonymous SNV 0.584 2 24 hm5C_associated_SNPs_50443 0 0 1 0 2 Ribosome 0.500231643918633 0.500231643921049 0.85099674 0 hm5C_site_45795 DeepMRMD:0.85099674;iRNA_m5C:0 45796 chr1 146765320 146765320 1 + A C HNSC 146765316 + 146765296 146765336 41 CCTTGATTGTGGCTCAGCATCGTGATCGTTCCAATGTCCTG CCTTGATTGTGGCTCAGCATCGTGCTCGTTCCAATGTCCTG < 41bp 0.840678731932683 0.496258612177692 0.42871964 0.44170237 prediction 0.681357463865365 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146765316 chr1:146765320 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50444 0 0 1 0 2 Ribosome 0.500193499390623 0.50022997854212 0 0 hm5C_site_45796 DeepMRMD:0;iRNA_m5C:0 45797 chr2 176957927 176957927 1 + A C LUSC 176957923 + 176957903 176957943 41 AGCGGCGCGCCCGGAGGCTCCCCCAGCCAAAGAGTGCCCAG AGCGGCGCGCCCGGAGGCTCCCCCCGCCAAAGAGTGCCCAG < 41bp 0.857868642903253 0.517213770573078 0.16808146 0.06340647 prediction 0.68130974466035 Functional Loss - HOXD13 ENSG00000128714 CDS Human protein_coding chr2:176957923 chr2:176957927 synonymous SNV . 0 25 hm5C_associated_SNPs_50445 0 0 1 0 0 exosome 0.500210758021546 0.500231644436322 0 0 hm5C_site_45797 DeepMRMD:0;iRNA_m5C:0 45798 chr8 102570830 102570830 1 + G T LUAD 102570827 + 102570807 102570847 41 ATCATCCCGGTGTCGGGAATCACGGTGGTGAAAGCTGAAGA ATCATCCCGGTGTCGGGAATCACTGTGGTGAAAGCTGAAGA < 41bp 0.840636605021344 0.489327712733313 0.88761216 0.4107467 prediction 0.681273210042687 Functional Loss - GRHL2 ENSG00000083307 CDS Human protein_coding chr8:102570827 chr8:102570830 synonymous SNV . 0 24 hm5C_associated_SNPs_50446 0 0 0 0 0 Nucleus 0.500232653017242 0.500231643917324 0.77522432 2.01819983569607e-06 hm5C_site_45798 DeepMRMD:0.77522432;iRNA_m5C:2.01819983569607e-06 45799 chr2 162280049 162280049 1 + G T LUSC 162280046 + 162280026 162280066 41 ACCCGGGCGCGGGCGCGGGCCCCGGGCCGGGTACGGACCGC ACCCGGGCGCGGGCGCGGGCCCCTGGCCGGGTACGGACCGC < 41bp 0.840635868207538 0.491761183526475 0.80793333 0.45009562 prediction 0.681271736415076 Functional Loss - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162280046 chr2:162280049 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_50447 0 0 0 0 0 exosome 0.500231643921092 0.500231643920538 0.61586666 1.10844666778576e-12 hm5C_site_45799 DeepMRMD:0.61586666;iRNA_m5C:1.10844666778576e-12 45800 chrX 48649530 48649530 1 + G T UCEC 48649527 + 48649507 48649547 41 CAGAGGCTCCATGGAGTTCCCTGGCCTGGGGTCCCTGGGGA CAGAGGCTCCATGGAGTTCCCTGTCCTGGGGTCCCTGGGGA < 41bp 0.840635749479742 0.48822556351608 0.3704514 0.21697173 prediction 0.681271498959483 Functional Loss - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48649527 chrX:48649530 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_50448 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_45800 DeepMRMD:0;iRNA_m5C:0 45801 chr9 135862164 135862164 1 + G T LUSC 135862161 + 135862141 135862181 41 CTCTGGCCTCCTGCCCTTACCCCGGGTGAGTCAGAGCCCGG CTCTGGCCTCCTGCCCTTACCCCTGGTGAGTCAGAGCCCGG < 41bp 0.840629500074927 0.49781336579184 0.8890149 0.23929688 prediction 0.681259000149854 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135862161 chr9:135862164 synonymous SNV . 0 24 hm5C_associated_SNPs_50449 0 0 1 0 1 chromatin 0.500231643921092 0.500231643917537 0.7780298 7.1098682496995e-12 hm5C_site_45801 DeepMRMD:0.7780298;iRNA_m5C:7.1098682496995e-12 45802 chr1 207850821 207850821 1 + A C UCEC 207850817 + 207850797 207850837 41 AGTTTCCCATTGGGACATATCTGAACTATGAATGCCGCCCT AGTTTCCCATTGGGACATATCTGACCTATGAATGCCGCCCT < 41bp 0.864261841359358 0.523648127537601 0.31009454 0.37119728 prediction 0.681227427643515 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207850817 chr1:207850821 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_50450 0 0 0 0 1 Endoplasmic reticulum 0.50023164416555 0.50023164597898 0 0 hm5C_site_45802 DeepMRMD:0;iRNA_m5C:0 45803 chr16 9197114 9197114 1 + A C LUAD 9197110 + 9197090 9197130 41 CCTTCCGGGAAGCCATAGCTCTGCATGGTAAAGCCGTTTAA CCTTCCGGGAAGCCATAGCTCTGCCTGGTAAAGCCGTTTAA < 41bp 0.877543107143844 0.536951246751298 0.13793266 0.16105539 prediction 0.681183720785092 Functional Loss - C16orf72 ENSG00000182831 CDS Human protein_coding chr16:9197110 chr16:9197114 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_50451 0 0 1 0 1 Cytosol 0.500231643921093 0.500231643921093 0 0 hm5C_site_45803 DeepMRMD:0;iRNA_m5C:0 45804 chr12 56629383 56629383 1 + G T LGG 56629380 + 56629360 56629400 41 ACGCAGGACCTGGCGGACTACCAGAGAAGGACCTGGGCCCG ACGCAGGACCTGGCGGACTACCATAGAAGGACCTGGGCCCG < 41bp 0.854442577603738 0.513853366338104 0.87698054 0.60168946 prediction 0.681178422531268 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56629380 chr12:56629383 stopgain 0.908 0 24 hm5C_associated_SNPs_50452 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921093 0.55058216 0 hm5C_site_45804 DeepMRMD:0.55058216;iRNA_m5C:0 45805 chr7 154862900 154862900 1 + C A LUAD 154862903 - 154862883 154862923 41 CGCCCGGACAGCTCGTGCACCAGGCTCAGCGGCATGACCAG CGCCCGGACAGCTCGTGCACCAGTCTCAGCGGCATGACCAG < 41bp 0.840541327721749 0.487885998092052 0.19379517 0.05358675 prediction 0.681082655443499 Functional Loss - HTR5A ENSG00000157219;ENSG00000220575 CDS Human other chr7:154862903 chr7:154862900 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_50453 0 0 0 0 0 exosome 0.500232332863579 0.500231647377025 0 1.37097310726197e-06 hm5C_site_45805 DeepMRMD:0;iRNA_m5C:1.37097310726197e-06 45806 chr13 114288331 114288331 1 + G T LUAD 114288328 + 114288308 114288348 41 GTCTGCCCACCAACTCGGCTCAGGAATGTCAGAACTTAGAG GTCTGCCCACCAACTCGGCTCAGTAATGTCAGAACTTAGAG < 41bp 0.851476604056516 0.510941929414407 0.30631286 0.10492289 prediction 0.681069349284217 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114288328 chr13:114288331 stopgain 0.981 1 24 hm5C_associated_SNPs_50454 0 0 0 0 1 Cytosol 0.500231643921081 0.500231716362193 0 0 hm5C_site_45806 DeepMRMD:0;iRNA_m5C:0 45807 chr14 24108557 24108557 1 + G T LUAD 24108554 + 24108534 24108574 41 AGGCTGAGGACCGGGAGCAGCTGGTGGCCAAGGTGAGGGGG AGGCTGAGGACCGGGAGCAGCTGTTGGCCAAGGTGAGGGGG < 41bp 0.844989311477767 0.504459628430377 0.66514695 0.34657386 prediction 0.681059366094779 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108554 chr14:24108557 nonsynonymous SNV 0.221 1 24 hm5C_associated_SNPs_50455 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.3302939 0 hm5C_site_45807 DeepMRMD:0.3302939;iRNA_m5C:0 45808 chr11 119044492 119044492 1 + G T UCEC 119044489 + 119044469 119044509 41 GGCAAGAGCACGCTGGTGCGCAAGATGGTTCTGGACTGGTG GGCAAGAGCACGCTGGTGCGCAATATGGTTCTGGACTGGTG < 41bp 0.840509858496822 0.490232804893614 0.41391587 0.2306242 prediction 0.681019716993644 Functional Loss - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119044489 chr11:119044492 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50456 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_45808 DeepMRMD:0;iRNA_m5C:0 45809 chr11 55541352 55541352 1 + G T HNSC 55541349 + 55541329 55541369 41 CTCAGAAGCTCTGTGCTCTTCTGGTGGCTGGGTCCTATACA CTCAGAAGCTCTGTGCTCTTCTGTTGGCTGGGTCCTATACA < 41bp 0.840474533171567 0.498336887822534 0.38904807 0.17772585 prediction 0.680949066343133 Functional Loss - OR5D13 ENSG00000198877 CDS Human other chr11:55541349 chr11:55541352 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_50457 0 0 0 0 0 unknown 0.500231643885405 0.500231643921113 0 0 hm5C_site_45809 DeepMRMD:0;iRNA_m5C:0 45810 chr5 140812561 140812561 1 + G T LUSC 140812558 + 140812538 140812578 41 TCGCACTTTGTGGGCGTGGACGGGGTGCAGGCTTTCCTGCA TCGCACTTTGTGGGCGTGGACGGTGTGCAGGCTTTCCTGCA < 41bp 0.840473506030597 0.493821481152568 0.94035065 0.8385056 prediction 0.680947012061193 Functional Loss - PCDHGA12 ENSG00000253159 CDS Human protein_coding chr5:140812558 chr5:140812561 synonymous SNV . 0 24 hm5C_associated_SNPs_50458 0 0 0 0 0 exosome 0.500231643794613 0.500231627763054 0.2036901 3.20631183825526e-08 hm5C_site_45810 DeepMRMD:0.2036901;iRNA_m5C:3.20631183825526e-08 45811 chr6 97052739 97052739 1 + G T LUSC 97052736 + 97052716 97052756 41 AAGGATGAGCGCCTGCTGTGCACGGAGTGCTATTCTAACGA AAGGATGAGCGCCTGCTGTGCACTGAGTGCTATTCTAACGA < 41bp 0.854041731882941 0.513570954687714 0.15055582 0.04351753 prediction 0.680941554390453 Functional Loss - FHL5 ENSG00000112214 CDS Human protein_coding chr6:97052736 chr6:97052739 synonymous SNV . 0 24 hm5C_associated_SNPs_50459 0 0 0 0 1 exosome 0.500237491152596 0.500257406098542 0 0 hm5C_site_45811 DeepMRMD:0;iRNA_m5C:0 45812 chr16 27459912 27459912 1 + G T GBM 27459909 + 27459889 27459929 41 TGGAGCTGGGACCCTGGAGCCCAGAGGTGCCCTCCACCCTG TGGAGCTGGGACCCTGGAGCCCATAGGTGCCCTCCACCCTG < 41bp 0.853984490282458 0.513515717390967 0.5919141 0.2985072 prediction 0.680937545782982 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27459909 chr16:27459912 stopgain 0.001 0 24 hm5C_associated_SNPs_50460 0 0 0 0 1 nucleus 0.500231643921086 0.500231643921614 0.1838282 0 hm5C_site_45812 DeepMRMD:0.1838282;iRNA_m5C:0 45813 chr17 695133 695133 1 + A C KIRP 695129 + 695109 695149 41 ATTGGCGGGGAGACCTACGGCGTGAGCCTGGAGTCCCTGCA ATTGGCGGGGAGACCTACGGCGTGCGCCTGGAGTCCCTGCA < 41bp 0.840463854333739 0.488522201425694 0.27605325 0.13487473 prediction 0.680927708667478 Functional Loss - MRM3 ENSG00000171861 CDS Human protein_coding chr17:695129 chr17:695133 nonsynonymous SNV 0.925 4 25 hm5C_associated_SNPs_50461 0 0 1 0 0 chromatin 0.500231643921111 0.500231643921094 0 3.37507799486048e-14 hm5C_site_45813 DeepMRMD:0;iRNA_m5C:3.37507799486048e-14 45814 chr3 33907945 33907945 1 + A C rs3183987 33907941 + 33907921 33907961 41 TCACCAGAGTCCTGGACAGGCTCCATACCCGGGACCCCAGC TCACCAGAGTCCTGGACAGGCTCCCTACCCGGGACCCCAGC < 41bp 0.871045749437902 0.530582733937492 0.92399514 0.03699529 prediction 0.680926031000819 Functional Loss - PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33907941 chr3:33907945 synonymous SNV . 0 25 hm5C_associated_SNPs_50462 0 0 1 0 0 Nucleus 0.500231807398334 0.500231643921092 0.84799028 3.26954483931274e-07 hm5C_site_45814 DeepMRMD:0.84799028;iRNA_m5C:3.26954483931274e-07 45815 chr3 112998289 112998289 1 + G T LUSC 112998286 + 112998266 112998306 41 TCGCGGCTGTCCGTGGAGATCACGGGCCTAGAGAAAGGTAG TCGCGGCTGTCCGTGGAGATCACTGGCCTAGAGAAAGGTAG < 41bp 0.840461662816314 0.497637681729817 0.8597001 0.36748323 prediction 0.680923325632629 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:112998286 chr3:112998289 synonymous SNV . 0 24 hm5C_associated_SNPs_50463 0 0 0 0 1 nucleoplasm 0.500231643921093 0.500231643921094 0.7194002 0 hm5C_site_45815 DeepMRMD:0.7194002;iRNA_m5C:0 45816 chr19 52941847 52941847 1 + A C rs1366259 52941843 + 52941823 52941863 41 AAGGCATCGGAAAGTTCATACTGGAGAGAAACCTTACAAAT AAGGCATCGGAAAGTTCATACTGGCGAGAAACCTTACAAAT < 41bp 0.840461044029057 0.488316716432144 0.26592952 0.2132873 prediction 0.680922088058115 Functional Loss - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52941843 chr19:52941847 synonymous SNV . 0 25 hm5C_associated_SNPs_50464 0 0 0 0 0 exosome 0.500231643921112 0.500231643921092 0 3.95239396766556e-14 hm5C_site_45816 DeepMRMD:0;iRNA_m5C:3.95239396766556e-14 45817 chr19 14139093 14139093 1 + G T OV 14139090 + 14139070 14139110 41 GCTGTGGCCGGGAGCTGAGGCCCGGGCAGCGCCTTACGGGG GCTGTGGCCGGGAGCTGAGGCCCTGGCAGCGCCTTACGGGG < 41bp 0.850831480181363 0.510372090492965 0.88468695 0.7754107 prediction 0.680918779376798 Functional Loss - RLN3 ENSG00000171136 CDS Human protein_coding chr19:14139090 chr19:14139093 nonsynonymous SNV 0.021 1 24 hm5C_associated_SNPs_50465 0 0 0 0 0 exosome 0.500231643921536 0.500231643921093 0.2185525 8.870681966755e-13 hm5C_site_45817 DeepMRMD:0.2185525;iRNA_m5C:8.870681966755e-13 45818 chr11 66189940 66189940 1 + G T UCEC 66189937 + 66189917 66189957 41 TCCAGGTGGACCTGGTTGCCCAGGGTGACAGCATCTACGAC TCCAGGTGGACCTGGTTGCCCAGTGTGACAGCATCTACGAC < 41bp 0.840421553794126 0.476859153320041 0.6983727 0.17314008 prediction 0.680843107588253 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66189937 chr11:66189940 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50466 0 0 0 0 2 unknown 0.500231643921092 0.500231643921073 0.3967454 3.93018950717305e-14 hm5C_site_45818 DeepMRMD:0.3967454;iRNA_m5C:3.93018950717305e-14 45819 chr19 10747196 10747196 1 + G T LUAD 10747193 + 10747173 10747213 41 GGGGCCTTTGCCTCCTACTACTGGGCCCTGCGCAAGCCGGA GGGGCCTTTGCCTCCTACTACTGTGCCCTGCGCAAGCCGGA < 41bp 0.849186575376841 0.508808935424988 0.2804777 0.14330557 prediction 0.680755279903705 Functional Loss - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10747193 chr19:10747196 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_50467 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921093 0 0 hm5C_site_45819 DeepMRMD:0;iRNA_m5C:0 45820 chr7 31013718 31013718 1 + G T UCEC 31013715 + 31013695 31013735 41 GGCCTCCACCTCCCCCAGCTCAAGGAGAGCCTTCTGGTGGC GGCCTCCACCTCCCCCAGCTCAATGAGAGCCTTCTGGTGGC < 41bp 0.864990432477015 0.524615713771037 0.88821256 0.17824644 prediction 0.680749437411955 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31013715 chr7:31013718 nonsynonymous SNV 0.061 3 24 hm5C_associated_SNPs_50468 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.77642512 0 hm5C_site_45820 DeepMRMD:0.77642512;iRNA_m5C:0 45821 chr7 99700524 99700524 1 + G T STAD 99700521 + 99700501 99700541 41 TGGGCGATTACTGTGGCTCCCTGGGCGAGGGGACCATCTCC TGGGCGATTACTGTGGCTCCCTGTGCGAGGGGACCATCTCC < 41bp 0.861633942204181 0.521282968135975 0.15815982 0.033983916 prediction 0.680701948136412 Functional Loss - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99700521 chr7:99700524 nonsynonymous SNV 0.544 1 24 hm5C_associated_SNPs_50469 0 0 0 0 3 Cytosol 0.500231643921092 0.500231643933986 0 0 hm5C_site_45821 DeepMRMD:0;iRNA_m5C:0 45822 chr16 135720 135720 1 + G T STAD 135717 + 135697 135737 41 AACCCCTCCGCTTCTATGTCCGGGGCAGCCCCTGGGTCAGT AACCCCTCCGCTTCTATGTCCGGTGCAGCCCCTGGGTCAGT < 41bp 0.85427716995558 0.513930013155546 0.9065386 0.43538085 prediction 0.680694313600068 Functional Loss - MPG ENSG00000103152 CDS Human protein_coding chr16:135717 chr16:135720 nonsynonymous SNV 0.827 4 24 hm5C_associated_SNPs_50470 0 0 1 0 0 Ribosome 0.500231650269755 0.500231643822096 0.8130772 1.28953174804991e-08 hm5C_site_45822 DeepMRMD:0.8130772;iRNA_m5C:1.28953174804991e-08 45823 chr2 239003163 239003163 1 + G T LUAD 239003160 + 239003140 239003180 41 CCATCCGGGGACCCCGGCTTCAAGGTGATGGCCCCTCACCC CCATCCGGGGACCCCGGCTTCAATGTGATGGCCCCTCACCC < 41bp 0.840343483772556 0.474358214747563 0.89393044 0.37075114 prediction 0.680686967545112 Functional Loss - SCLY ENSG00000132330 CDS Human protein_coding chr2:239003160 chr2:239003163 nonsynonymous SNV 0.858 4 24 hm5C_associated_SNPs_50471 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643983287 0.78786088 0 hm5C_site_45823 DeepMRMD:0.78786088;iRNA_m5C:0 45824 chr12 68043612 68043612 1 + G T STAD 68043609 + 68043589 68043629 41 ACAGCGCCGTTCGTCAGCTTCAGGCTTCCCCGGGGCTCGGT ACAGCGCCGTTCGTCAGCTTCAGTCTTCCCCGGGGCTCGGT < 41bp 0.849205377282349 0.508867135474195 0.9149964 0.8813975 prediction 0.680676483616308 Functional Loss - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68043609 chr12:68043612 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_50472 0 0 1 0 1 Ribosome 0.500231643921091 0.500231643921092 0.0671978000000002 0 hm5C_site_45824 DeepMRMD:0.0671978000000002;iRNA_m5C:0 45825 chr3 8609165 8609165 1 + G T SARC 8609162 + 8609142 8609182 41 ACTACCAGCGTGTGGAAGATCTGGCCTGGCACCGAAAGCAC ACTACCAGCGTGTGGAAGATCTGTCCTGGCACCGAAAGCAC < 41bp 0.840334496355728 0.491475454233217 0.19682544 0.059860945 prediction 0.680668992711456 Functional Loss - LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8609162 chr3:8609165 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50473 0 0 0 0 1 exosome 0.500231618017981 0.500231646354866 0 0 hm5C_site_45825 DeepMRMD:0;iRNA_m5C:0 45826 chr19 804112 804112 1 + G T PRAD 804109 + 804089 804129 41 CCCTCTAGAGTGATCCACATCCGGAAGCTCCCCATCGACGT CCCTCTAGAGTGATCCACATCCGTAAGCTCCCCATCGACGT < 41bp 0.840271789201743 0.477684217040009 0.7989419 0.16691455 prediction 0.680543578403485 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804109 chr19:804112 synonymous SNV . 0 24 hm5C_associated_SNPs_50474 0 0 1 0 2 Cytosol 0.500238418066145 0.500231643935717 0.5978838 1.35482608571991e-05 hm5C_site_45826 DeepMRMD:0.5978838;iRNA_m5C:1.35482608571991e-05 45827 chr5 95194594 95194594 1 + A C ESCA 95194590 + 95194570 95194610 41 TTCAGGCTGCTGCTCCATCGCATGAATTCCAGCAGGTGGCG TTCAGGCTGCTGCTCCATCGCATGCATTCCAGCAGGTGGCG < 41bp 0.842458985848351 0.502192430623284 0.17587131 0.12702656 prediction 0.680533110450134 Functional Loss - LINC01554 ENSG00000236882 CDS Human lincRNA chr5:95194590 chr5:95194594 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_50475 0 0 0 0 1 unknown 0.500231643925484 0.500231643921092 0 8.78452866004409e-12 hm5C_site_45827 DeepMRMD:0;iRNA_m5C:8.78452866004409e-12 45828 chr3 46399500 46399500 1 + G T PRAD 46399497 + 46399477 46399517 41 GGTCACCTTTGGGGTGGTGACAAGTGTGATCACCTGGTTGG GGTCACCTTTGGGGTGGTGACAATTGTGATCACCTGGTTGG < 41bp 0.840259428941956 0.477833584212901 0.4583444 0.1016027 prediction 0.680518857883913 Functional Loss - CCR2 ENSG00000121807 CDS Human protein_coding chr3:46399497 chr3:46399500 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50476 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_45828 DeepMRMD:0;iRNA_m5C:0 45829 chr17 78039385 78039385 1 + G T STAD 78039382 + 78039362 78039402 41 AAGCACCGCGACGAGGCGCACAGGGCGGTGCTGGAGGCGCT AAGCACCGCGACGAGGCGCACAGTGCGGTGCTGGAGGCGCT < 41bp 0.840247476406273 0.484412482551954 0.89257836 0.4192998 prediction 0.680494952812546 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78039382 chr17:78039385 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50477 0 0 0 0 1 exosome 0.500231643846897 0.500231643921091 0.78515672 0 hm5C_site_45829 DeepMRMD:0.78515672;iRNA_m5C:0 45830 chr2 11052795 11052795 1 + G T SKCM 11052792 + 11052772 11052812 41 AAGCGCGAGTTCTACTTTGACAGGGACCCGGACGCCTTCAA AAGCGCGAGTTCTACTTTGACAGTGACCCGGACGCCTTCAA < 41bp 0.847293448947316 0.507055910726042 0.8837577 0.19487998 prediction 0.680475076442547 Functional Loss - KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11052792 chr2:11052795 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_50478 0 0 0 0 0 exosome 0.50023164112591 0.500231643922383 0.7675154 0 hm5C_site_45830 DeepMRMD:0.7675154;iRNA_m5C:0 45831 chrX 148798214 148798214 1 + G T COAD 148798211 + 148798191 148798231 41 CACTTCCTCTTTGGGGAGCCCAAGAGGCTCCTTACCCAAAA CACTTCCTCTTTGGGGAGCCCAATAGGCTCCTTACCCAAAA < 41bp 0.85175817934904 0.511554822469769 0.9413559 0.30546468 prediction 0.680406713758542 Functional Loss - MAGEA11 ENSG00000185247 CDS Human protein_coding chrX:148798211 chrX:148798214 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_50479 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.8827118 0 hm5C_site_45831 DeepMRMD:0.8827118;iRNA_m5C:0 45832 chr18 76753134 76753134 1 + G T STAD 76753131 + 76753111 76753151 41 CCCAACCCGCTGGTCAGCATCGCGGCCACGGCCAACGCTCT CCCAACCCGCTGGTCAGCATCGCTGCCACGGCCAACGCTCT < 41bp 0.858166315240402 0.517975166080975 0.84839183 0.29033235 prediction 0.680382298318853 Functional Loss - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76753131 chr18:76753134 synonymous SNV . 0 24 hm5C_associated_SNPs_50480 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0.69678366 0 hm5C_site_45832 DeepMRMD:0.69678366;iRNA_m5C:0 45833 chr17 43246611 43246611 1 + A C GBM 43246607 + 43246587 43246627 41 ACCGTCGGCGGCCATCGAAGCGCAAAAGGCACTGGCGACCC ACCGTCGGCGGCCATCGAAGCGCACAAGGCACTGGCGACCC < 41bp 0.87795549658909 0.537785993567362 0.38483375 0.18949226 prediction 0.680339006043455 Functional Loss - HEXIM2 ENSG00000168517 CDS Human protein_coding chr17:43246607 chr17:43246611 nonsynonymous SNV 0.763 2 25 hm5C_associated_SNPs_50481 0 0 0 0 0 chromatin 0.500231643921092 0.500231643920514 0 1.15774057007911e-12 hm5C_site_45833 DeepMRMD:0;iRNA_m5C:1.15774057007911e-12 45834 chr19 58196753 58196753 1 + G T LUAD 58196750 + 58196730 58196770 41 ACTTTGCACATGTAACATCCCTGGGTAAGGCCCTAGCATCC ACTTTGCACATGTAACATCCCTGTGTAAGGCCCTAGCATCC < 41bp 0.840164878415691 0.497303899221936 0.71271485 0.10342321 prediction 0.680329756831382 Functional Loss - ZNF551 ENSG00000204519 CDS Human protein_coding chr19:58196750 chr19:58196753 nonsynonymous SNV 0.442 2 24 hm5C_associated_SNPs_50482 0 0 1 0 1 Cytosol 0.500231644446972 0.500231643921118 0.4254297 1.05170827602308e-09 hm5C_site_45834 DeepMRMD:0.4254297;iRNA_m5C:1.05170827602308e-09 45835 chr14 20404272 20404272 1 + G T LUAD 20404269 + 20404249 20404289 41 GTAATTTTTGTGTCTATTTCCTGGGCGGTGGGCGTTCTTCA GTAATTTTTGTGTCTATTTCCTGTGCGGTGGGCGTTCTTCA < 41bp 0.842677231177272 0.5025316710919 0.5471761 0.08670336 prediction 0.680291120170743 Functional Loss - OR4K1 ENSG00000155249 CDS Human protein_coding chr14:20404269 chr14:20404272 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_50483 0 0 0 0 0 unknown 0.500231699850918 0.500188271585949 0.0943522000000001 8.68565299394497e-05 hm5C_site_45835 DeepMRMD:0.0943522000000001;iRNA_m5C:8.68565299394497e-05 45836 chr3 42700306 42700306 1 + G T UCEC 42700303 + 42700283 42700323 41 GCCGACACCCCAGGCCTGCCCAAGATCTATGCCCGCGAGGG GCCGACACCCCAGGCCTGCCCAATATCTATGCCCGCGAGGG < 41bp 0.84012609854695 0.466883902642563 0.5596782 0.3227095 prediction 0.680252197093899 Functional Loss - ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42700303 chr3:42700306 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_50484 0 0 0 0 0 membrane 0.500231643921086 0.500231643921086 0.1193564 0 hm5C_site_45836 DeepMRMD:0.1193564;iRNA_m5C:0 45837 chr11 119050707 119050707 1 + G T UCEC 119050704 + 119050684 119050724 41 CTGGAGAATGCCCAGGCCATCAAGAAGAAGCTGGGCAAGCT CTGGAGAATGCCCAGGCCATCAATAAGAAGCTGGGCAAGCT < 41bp 0.842001950678913 0.501879501839364 0.7418618 0.22931308 prediction 0.680244897679098 Functional Loss - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119050704 chr11:119050707 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50485 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0.4837236 0 hm5C_site_45837 DeepMRMD:0.4837236;iRNA_m5C:0 45838 chr14 29242597 29242597 1 + G T UCEC 29242594 + 29242574 29242614 41 TGAGGTTGTCCGAAGGATGCCGAGGAAAAGGATATCAGGAC TGAGGTTGTCCGAAGGATGCCGATGAAAAGGATATCAGGAC < 41bp 0.840107253684303 0.491261607541649 0.42271888 0.29439265 prediction 0.680214507368607 Functional Loss - LINC01551 ENSG00000186960 CDS Human lincRNA chr14:29242594 chr14:29242597 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50486 0 0 0 0 2 unknown 0.50023164391696 0.500238233007696 0 0 hm5C_site_45838 DeepMRMD:0;iRNA_m5C:0 45839 chr19 36276202 36276202 1 + G T SARC 36276199 + 36276179 36276219 41 CCTCGAAAGAAGCCCCTGCCCTGGCTGGGGGGCACCCGTGC CCTCGAAAGAAGCCCCTGCCCTGTCTGGGGGGCACCCGTGC < 41bp 0.849164311469003 0.509064648656264 0.093280345 0.044353694 prediction 0.680199325625478 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36276199 chr19:36276202 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50487 0 0 1 0 1 chromatin 0.500231643921092 0.500231643920446 0 1.29207755605876e-12 hm5C_site_45839 DeepMRMD:0;iRNA_m5C:1.29207755605876e-12 Accelerometer-based physical activity measurement (fraction of time with accelerations >425 milli-gravities) 45840 chr19 10132310 10132310 1 + G T SARC 10132307 + 10132287 10132327 41 GCTCAAAACCGTGGATTCCTCTGGCAGCCTGTATGTGCGAA GCTCAAAACCGTGGATTCCTCTGTCAGCCTGTATGTGCGAA < 41bp 0.840093450550944 0.488802329449914 0.3440737 0.10231131 prediction 0.680186901101888 Functional Loss - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10132307 chr19:10132310 nonsynonymous SNV 0.013 4 24 hm5C_associated_SNPs_50488 0 0 0 0 0 unknown 0.500231643578642 0.500231643921092 0 0 hm5C_site_45840 DeepMRMD:0;iRNA_m5C:0 45841 chr5 140590414 140590414 1 + G T UCEC 140590411 + 140590391 140590431 41 CACAGGCTGGTGGTGCTGGTCAAGGACAATGGCGAGCCTCC CACAGGCTGGTGGTGCTGGTCAATGACAATGGCGAGCCTCC < 41bp 0.849502985475346 0.509413167148403 0.7162204 0.24298614 prediction 0.680179636653886 Functional Loss - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140590411 chr5:140590414 nonsynonymous SNV 0.075 3 24 hm5C_associated_SNPs_50489 0 0 0 0 0 exosome 0.50023164392294 0.500231643917151 0.4324408 1.15780718346059e-11 hm5C_site_45841 DeepMRMD:0.4324408;iRNA_m5C:1.15780718346059e-11 45842 chr16 2811883 2811883 1 + G T HNSC 2811880 + 2811860 2811900 41 CTCCAGCTCCAGGGTCCCACCGAGAGATTTCTTCTTCTCCC CTCCAGCTCCAGGGTCCCACCGATAGATTTCTTCTTCTCCC < 41bp 0.840076689948715 0.499111548462676 0.89324033 0.070652366 prediction 0.680153379897431 Functional Loss - SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2811880 chr16:2811883 stopgain 0.995 1 24 hm5C_associated_SNPs_50490 0 0 1 0 0 Nucleus 0.500231643921094 0.500231643921092 0.78648066 2.66453525910038e-15 hm5C_site_45842 DeepMRMD:0.78648066;iRNA_m5C:2.66453525910038e-15 45843 chr1 246810640 246810640 1 + G T LUAD 246810637 + 246810617 246810657 41 GCGCTCCACACCCAGTCCTCCGAGACAGCAGGGAGCCCGTC GCGCTCCACACCCAGTCCTCCGATACAGCAGGGAGCCCGTC < 41bp 0.841122748565691 0.501048502717668 0.26064983 0.04354626 prediction 0.680148491696046 Functional Loss - CNST ENSG00000162852 CDS Human protein_coding chr1:246810637 chr1:246810640 nonsynonymous SNV 0.176 0 24 hm5C_associated_SNPs_50491 0 0 1 0 0 Ribosome 0.500231691526736 0.500231643921093 0 9.52112864105459e-08 hm5C_site_45843 DeepMRMD:0;iRNA_m5C:9.52112864105459e-08 45844 chr9 113530333 113530333 1 + G T COAD 113530330 + 113530310 113530350 41 CATCTTCCAGGAGTGCAGTCCTGGAGTAGTGCCTACTCCTA CATCTTCCAGGAGTGCAGTCCTGTAGTAGTGCCTACTCCTA < 41bp 0.840050866734927 0.498560841828708 0.4925679 0.18612108 prediction 0.680101733469853 Functional Loss - MUSK ENSG00000030304 CDS Human protein_coding chr9:113530330 chr9:113530333 nonsynonymous SNV 0.729 1 24 hm5C_associated_SNPs_50492 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_45844 DeepMRMD:0;iRNA_m5C:0 45845 chr20 37536822 37536822 1 + G T KIRP 37536819 + 37536799 37536839 41 TCAGGGAGACCAGGACAGACCAAGAGAATAAGGACCCTGTG TCAGGGAGACCAGGACAGACCAATAGAATAAGGACCCTGTG < 41bp 0.848063569884528 0.508014830699856 0.8351677 0.78216743 prediction 0.680097478369343 Functional Loss - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37536819 chr20:37536822 stopgain 1.000 1 24 hm5C_associated_SNPs_50493 0 0 0 0 1 Cytosol 0.500232162660721 0.500231644484755 0.10600054 1.03635193138274e-06 hm5C_site_45845 DeepMRMD:0.10600054;iRNA_m5C:1.03635193138274e-06 45846 chr22 43435837 43435837 1 + G T LUAD 43435834 + 43435814 43435854 41 AGTCTCTCGATCGGCCTGCTCTGGGCCCCAGAGACTGACCC AGTCTCTCGATCGGCCTGCTCTGTGCCCCAGAGACTGACCC < 41bp 0.847652894264167 0.507622340084906 0.49774542 0.10557136 prediction 0.680061108358522 Functional Loss - TTLL1 ENSG00000100271 CDS Human protein_coding chr22:43435834 chr22:43435837 nonsynonymous SNV 0.098 0 24 hm5C_associated_SNPs_50494 0 0 0 0 0 Nucleus 0.500231643921092 0.500231637951974 0 1.19382368435339e-08 hm5C_site_45846 DeepMRMD:0;iRNA_m5C:1.19382368435339e-08 45847 chr10 70644886 70644886 1 + G T BLCA 70644883 + 70644863 70644903 41 TCAGGGAAGTGAGTTTCAGCCAGGAAGCATTAGACTGGAGA TCAGGGAAGTGAGTTTCAGCCAGTAAGCATTAGACTGGAGA < 41bp 0.840029414739363 0.497169920831328 0.80258036 0.8106113 prediction 0.680058829478726 Functional Loss - STOX1 ENSG00000165730 CDS Human protein_coding chr10:70644883 chr10:70644886 nonsynonymous SNV 0.060 1 24 hm5C_associated_SNPs_50495 0 0 0 0 0 Endoplasmic reticulum 0.502368862894167 0.500231644008024 0 0.00427443777228587 hm5C_site_45847 DeepMRMD:0;iRNA_m5C:0.00427443777228587 45848 chr11 113934445 113934445 1 + G T SKCM 113934442 + 113934422 113934462 41 GAGGCCACCATGGCCGATGGCGGGGCCGAGGAAGAAGAGGA GAGGCCACCATGGCCGATGGCGGTGCCGAGGAAGAAGAGGA < 41bp 0.84000577364876 0.480959487896126 0.92657876 0.86861134 prediction 0.68001154729752 Functional Loss - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:113934442 chr11:113934445 synonymous SNV . 0 24 hm5C_associated_SNPs_50496 0 0 0 0 0 Nucleus 0.500231643921085 0.500231643920921 0.11593484 3.27071703054571e-13 hm5C_site_45848 DeepMRMD:0.11593484;iRNA_m5C:3.27071703054571e-13 45849 chr10 98742990 98742990 1 + G T STAD 98742987 + 98742967 98743007 41 ACAAAGAAGTCAAGGAGTTACGAGGAGAGATTTTCCCCAGC ACAAAGAAGTCAAGGAGTTACGATGAGAGATTTTCCCCAGC < 41bp 0.844815487051765 0.504832878612571 0.88536716 0.16096762 prediction 0.679965216878387 Functional Loss - LCOR ENSG00000155640 CDS Human other chr10:98742987 chr10:98742990 stopgain 0.012 0 24 hm5C_associated_SNPs_50497 0 0 1 0 0 Ribosome 0.500231640392573 0.500231643797183 0.77073432 0 hm5C_site_45849 DeepMRMD:0.77073432;iRNA_m5C:0 45850 chr22 35785924 35785924 1 + G T UCEC 35785921 + 35785901 35785941 41 CCAGAGCCCCTCACGGGCACCAGGGCTTCGCCAGCGGGCCA CCAGAGCCCCTCACGGGCACCAGTGCTTCGCCAGCGGGCCA < 41bp 0.863955531974665 0.523976549985595 0.9006871 0.20583975 prediction 0.679957963978139 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35785921 chr22:35785924 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50498 0 0 1 0 2 exosome 0.500231643921093 0.500231649096575 0.8013742 0 hm5C_site_45850 DeepMRMD:0.8013742;iRNA_m5C:0 45851 chr3 193855566 193855566 1 + G T CESC 193855563 + 193855543 193855583 41 ACCCGCTTCCTGTCCACGTGCGAGGGCGTTAATACCGAGGT ACCCGCTTCCTGTCCACGTGCGATGGCGTTAATACCGAGGT < 41bp 0.839917624935893 0.490215049842212 0.9155406 0.16119331 prediction 0.679835249871786 Functional Loss - HES1 ENSG00000114315 CDS Human protein_coding chr3:193855563 chr3:193855566 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_50499 0 0 1 0 1 Cytosol 0.500231641859342 0.500231583046867 0.8310812 1.17624949336204e-07 hm5C_site_45851 DeepMRMD:0.8310812;iRNA_m5C:1.17624949336204e-07 45852 chr2 233537115 233537115 1 + G T UCEC 233537112 + 233537092 233537132 41 TTTCTGAGATCGATGTGGCCCTGGAGGGTGTCAAAGGTGCC TTTCTGAGATCGATGTGGCCCTGTAGGGTGTCAAAGGTGCC < 41bp 0.839917082135241 0.496360872301916 0.24358901 0.13673872 prediction 0.679834164270482 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233537112 chr2:233537115 stopgain 0.532 1 24 hm5C_associated_SNPs_50500 0 0 0 0 2 exosome 0.500231647723664 0.500231643921624 0 7.60407936617469e-09 hm5C_site_45852 DeepMRMD:0;iRNA_m5C:7.60407936617469e-09 45853 chr2 178977516 178977516 1 + G T LUAD 178977513 + 178977493 178977533 41 GCCCGCAGCTCACAGGCCTGCAGGGCCATGGAGGAGATGCA GCCCGCAGCTCACAGGCCTGCAGTGCCATGGAGGAGATGCA < 41bp 0.841082566729457 0.501173533754755 0.7225936 0.31416127 prediction 0.679818065949404 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178977513 chr2:178977516 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_50501 0 0 1 0 1 Nucleus 0.500231644900852 0.500230706011156 0.4451872 1.87777939109068e-06 hm5C_site_45853 DeepMRMD:0.4451872;iRNA_m5C:1.87777939109068e-06 45854 chr22 29446375 29446375 1 + G T LUAD 29446372 + 29446352 29446392 41 CTGGCAGCAGCACCTTGTTCCTGGGGCCCCACCTCTACGAG CTGGCAGCAGCACCTTGTTCCTGTGGCCCCACCTCTACGAG < 41bp 0.852766554211304 0.512862974457697 0.8918295 0.2523436 prediction 0.679807159507215 Functional Loss - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29446372 chr22:29446375 nonsynonymous SNV 0.182 4 24 hm5C_associated_SNPs_50502 0 0 1 0 0 Ribosome 0.500231643921813 0.500231643922162 0.783659 0 hm5C_site_45854 DeepMRMD:0.783659;iRNA_m5C:0 45855 chr8 146278031 146278031 1 + G T HNSC 146278028 + 146278008 146278048 41 CCAGGCCCGGGTACTCCCTGCGCGTCCCGCGGAGCCCGGCT CCAGGCCCGGGTACTCCCTGCGCTTCCCGCGGAGCCCGGCT < 41bp 0.83990343663482 0.492002156636262 0.30733168 0.27268356 prediction 0.679806873269641 Functional Loss - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278028 chr8:146278031 synonymous SNV . 0 24 hm5C_associated_SNPs_50503 0 0 1 0 1 Ribosome 0.500231643923831 0.500231643921097 0 5.46829248548875e-12 hm5C_site_45855 DeepMRMD:0;iRNA_m5C:5.46829248548875e-12 45856 chr12 6933586 6933586 1 + G T UCEC 6933583 + 6933563 6933603 41 GGCTGCCAGTTCATAGTCTCCAAGATCGGCCTCGGCTTTGG GGCTGCCAGTTCATAGTCTCCAATATCGGCCTCGGCTTTGG < 41bp 0.839902780470907 0.499412642786254 0.085036665 0.02103734 prediction 0.679805560941814 Functional Loss - GPR162 ENSG00000250510 CDS Human protein_coding chr12:6933583 chr12:6933586 nonsynonymous SNV 0.502 1 24 hm5C_associated_SNPs_50504 0 0 0 0 0 Endoplasmic reticulum 0.50023164954709 0.500231643614732 0 1.1864715210308e-08 hm5C_site_45856 DeepMRMD:0;iRNA_m5C:1.1864715210308e-08 45857 chrX 51640148 51640148 1 + G T ACC 51640145 + 51640125 51640165 41 GAACCCAGGTGCTGCACAGCCCCGAGATGTGGCCCTTCTTC GAACCCAGGTGCTGCACAGCCCCTAGATGTGGCCCTTCTTC < 41bp 0.850762387338375 0.51086509378364 0.29572108 0.16781518 prediction 0.67979458710947 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51640145 chrX:51640148 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50505 0 0 1 0 0 chromatin 0.500231645408428 0.500231644963134 0 8.90588047752772e-10 hm5C_site_45857 DeepMRMD:0;iRNA_m5C:8.90588047752772e-10 45858 chr19 56499243 56499243 1 + G T LUSC 56499240 + 56499220 56499260 41 ACTCCTCACCCACCCGACTTCACGGGAAAAAGTGACTGCCT ACTCCTCACCCACCCGACTTCACTGGAAAAAGTGACTGCCT < 41bp 0.843953928540642 0.504082965276811 0.3056645 0.17875642 prediction 0.679741926527662 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56499240 chr19:56499243 synonymous SNV . 0 24 hm5C_associated_SNPs_50506 0 0 0 0 1 unknown 0.500231643921084 0.500231640501185 0 6.83979828330905e-09 hm5C_site_45858 DeepMRMD:0;iRNA_m5C:6.83979828330905e-09 45859 chr17 61557763 61557763 1 + G T ESCA 61557760 + 61557740 61557780 41 CCCCCACCTTCGAGGACGATCTGGAACACCTCTACCAACAG CCCCCACCTTCGAGGACGATCTGTAACACCTCTACCAACAG < 41bp 0.839863524611713 0.493150648787199 0.3230151 0.109350175 prediction 0.679727049223426 Functional Loss - ACE ENSG00000159640 CDS Human protein_coding chr17:61557760 chr17:61557763 stopgain 0.229 1 24 hm5C_associated_SNPs_50507 0 0 0 0 1 cytosol 0.500231069323048 0.500231124461702 0 0 hm5C_site_45859 DeepMRMD:0;iRNA_m5C:0 45860 chr5 157178418 157178418 1 + G T UCEC 157178415 + 157178395 157178435 41 CAGTGCACGAAGGCAGCCCTCTGGGTGAACTCCATCGCTGT CAGTGCACGAAGGCAGCCCTCTGTGTGAACTCCATCGCTGT < 41bp 0.861853823467195 0.521994843963839 0.92002773 0.31052354 prediction 0.679717959006712 Functional Loss - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157178415 chr5:157178418 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50508 0 0 1 0 1 Ribosome 0.500231643925582 0.500231647162664 0.84005546 0 hm5C_site_45860 DeepMRMD:0.84005546;iRNA_m5C:0 45861 chrX 35989850 35989850 1 + G T HNSC 35989847 + 35989827 35989867 41 GCGAATCGATTGTTAACCACCAGGGGTATAGCATCTCAGGA GCGAATCGATTGTTAACCACCAGTGGTATAGCATCTCAGGA < 41bp 0.839854594889962 0.497003507793057 0.9287281 0.16871691 prediction 0.679709189779925 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35989847 chrX:35989850 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_50509 0 0 0 0 0 cytosol 0.500231645710738 0.500235364382425 0.8574562 0 hm5C_site_45861 DeepMRMD:0.8574562;iRNA_m5C:0 45862 chr14 52781683 52781683 1 + G T LUSC 52781680 + 52781660 52781700 41 CTGGAGCGCTACCTCTCGATCGGGCACCCCTACTTCTACCA CTGGAGCGCTACCTCTCGATCGGTCACCCCTACTTCTACCA < 41bp 0.860863927883904 0.521011502651265 0.91193706 0.028786302 prediction 0.679704850465278 Functional Loss - PTGER2 ENSG00000125384 CDS Human protein_coding chr14:52781680 chr14:52781683 synonymous SNV . 0 24 hm5C_associated_SNPs_50510 0 0 0 0 0 exosome 0.50023164549209 0.500231643921091 0.82387412 3.14199644080304e-09 hm5C_site_45862 DeepMRMD:0.82387412;iRNA_m5C:3.14199644080304e-09 45863 chr7 141351333 141351333 1 + A C COAD 141351329 + 141351309 141351349 41 TTTCCTGTGCTCACAGAAGTCGAAAGGTGAGAAACCCCAAG TTTCCTGTGCTCACAGAAGTCGAACGGTGAGAAACCCCAAG < 41bp 0.839827780519763 0.483236596758131 0.3091503 0.21058488 prediction 0.679655561039525 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141351329 chr7:141351333 nonsynonymous SNV 0.863 2 25 hm5C_associated_SNPs_50511 0 0 1 1 1 Cytosol 0.500231643921955 0.500231643921182 0 1.54565249488314e-12 hm5C_site_45863 DeepMRMD:0;iRNA_m5C:1.54565249488314e-12 45864 chr10 118969481 118969481 1 + G T LUAD 118969478 + 118969458 118969498 41 ACCTGGATGAAGTTGGACAGCAGGTGGAGAGGTTGGACATC ACCTGGATGAAGTTGGACAGCAGTTGGAGAGGTTGGACATC < 41bp 0.860643423176457 0.520817785832897 0.8974968 0.35193616 prediction 0.67965127468712 Functional Loss - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118969478 chr10:118969481 nonsynonymous SNV 0.968 1 24 hm5C_associated_SNPs_50512 0 0 0 0 0 unknown 0.500231643917293 0.500231643921092 0.7949936 0 hm5C_site_45864 DeepMRMD:0.7949936;iRNA_m5C:0 45865 chr3 119133927 119133927 1 + G T PAAD 119133924 + 119133904 119133944 41 GAAAGGAGCTAGGGACACACCTGGGGCACAGCAGTCCACAG GAAAGGAGCTAGGGACACACCTGTGGCACAGCAGTCCACAG < 41bp 0.839824375706592 0.490505525261653 0.48678815 0.06242913 prediction 0.679648751413183 Functional Loss - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119133924 chr3:119133927 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_50513 0 0 0 0 0 cytosol 0.500231645067383 0.500231642987373 0 4.16002121639281e-09 hm5C_site_45865 DeepMRMD:0;iRNA_m5C:4.16002121639281e-09 45866 chrX 35820653 35820653 1 + G T UCEC 35820650 + 35820630 35820670 41 GGAATGTGCCCGCAGATGCTCTCGACCAGAAAGTGGCTTTT GGAATGTGCCCGCAGATGCTCTCTACCAGAAAGTGGCTTTT < 41bp 0.839823032125283 0.493580543565624 0.20145911 0.3426944 prediction 0.679646064250566 Functional Loss - MAGEB16 ENSG00000189023 CDS Human protein_coding chrX:35820650 chrX:35820653 nonsynonymous SNV 0.009 1 24 hm5C_associated_SNPs_50514 0 0 0 0 0 exosome 0.500231643921062 0.500231643921666 0 0 hm5C_site_45866 DeepMRMD:0;iRNA_m5C:0 45867 chr20 36936018 36936018 1 + G T UCEC 36936015 + 36935995 36936035 41 CAGAAGGAGCTGAAGAGGATCAAGATTCCTGACTACTCAGA CAGAAGGAGCTGAAGAGGATCAATATTCCTGACTACTCAGA < 41bp 0.839782304617079 0.487828178925067 0.66456074 0.18490675 prediction 0.679564609234158 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36936015 chr20:36936018 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_50515 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921101 0.32912148 0 hm5C_site_45867 DeepMRMD:0.32912148;iRNA_m5C:0 45868 chr14 50089073 50089073 1 + A C ESCA 50089069 + 50089049 50089089 41 GTATCTTGTCTTCCAAAATTCTGGAAAGTGCTGGTTCCTCA GTATCTTGTCTTCCAAAATTCTGGCAAGTGCTGGTTCCTCA < 41bp 0.852879730516885 0.51309889684491 0.0494605 0.05900207 prediction 0.67956166734395 Functional Loss - MGAT2 ENSG00000168282 CDS Human protein_coding chr14:50089069 chr14:50089073 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_50516 0 0 1 0 0 Endoplasmic reticulum 0.500231643921692 0.500231763870304 0 0 hm5C_site_45868 DeepMRMD:0;iRNA_m5C:0 45869 chr4 5754572 5754572 1 + G T ESCA 5754569 + 5754549 5754589 41 GTTTCTTTTTGCAGGACGCCCTGGAGAGGACGATGGGGCGG GTTTCTTTTTGCAGGACGCCCTGTAGAGGACGATGGGGCGG < 41bp 0.839753182520925 0.49375409374747 0.3753842 0.23541147 prediction 0.67950636504185 Functional Loss - EVC ENSG00000072840 CDS Human protein_coding chr4:5754569 chr4:5754572 stopgain 0.951 0 24 hm5C_associated_SNPs_50517 0 0 0 0 1 Nucleus 0.500231643921447 0.500231643921417 0 6.17284001691587e-14 hm5C_site_45869 DeepMRMD:0;iRNA_m5C:6.17284001691587e-14 45870 chr16 2580811 2580811 1 + A C BRCA 2580807 + 2580787 2580827 41 GGTTGATCTCAGCCCACAAGCCCCAGGGGCAGCCCAGGAAA GGTTGATCTCAGCCCACAAGCCCCCGGGGCAGCCCAGGAAA < 41bp 0.839745431520355 0.483804088426157 0.18141189 0.13506281 prediction 0.67949086304071 Functional Loss - CEMP1 ENSG00000205923 CDS Human protein_coding chr16:2580807 chr16:2580811 synonymous SNV . 0 25 hm5C_associated_SNPs_50518 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_45870 DeepMRMD:0;iRNA_m5C:0 45871 chr13 21751095 21751095 1 + G T BLCA 21751092 + 21751072 21751112 41 TCCTCTGGCGCGGCCGCATTCCCGGCCGTCAGTGGATCGGG TCCTCTGGCGCGGCCGCATTCCCTGCCGTCAGTGGATCGGG < 41bp 0.847113753326285 0.507370277982197 0.6532745 0.29389298 prediction 0.679486950688177 Functional Loss - MRPL57 ENSG00000173141 CDS Human protein_coding chr13:21751092 chr13:21751095 nonsynonymous SNV 0.005 4 24 hm5C_associated_SNPs_50519 0 0 1 0 1 Ribosome 0.500231643921092 0.500231639424545 0.306549 8.99309515745017e-09 hm5C_site_45871 DeepMRMD:0.306549;iRNA_m5C:8.99309515745017e-09 45872 chr15 90611272 90611272 1 + G T LAML 90611269 + 90611249 90611289 41 CGCTGGCAGTGCCGCATGTGCGAGAAGTCCTACACGTCCAA CGCTGGCAGTGCCGCATGTGCGATAAGTCCTACACGTCCAA < 41bp 0.858123836834477 0.51839275782005 0.77790797 0.27435347 prediction 0.679462158028853 Functional Loss - ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90611269 chr15:90611272 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_50520 0 0 0 0 0 Endoplasmic reticulum 0.500231643870716 0.500231643921062 0.55581594 0 hm5C_site_45872 DeepMRMD:0.55581594;iRNA_m5C:0 45873 chr1 15541888 15541888 1 + A C KIRP 15541884 + 15541864 15541904 41 GCGAGGACCTGGCCCATGTCCAGCACCCGACAGGCGCTGGG GCGAGGACCTGGCCCATGTCCAGCCCCCGACAGGCGCTGGG < 41bp 0.839692353616745 0.460152698116762 0.27686697 0.3924815 prediction 0.67938470723349 Functional Loss - TMEM51 ENSG00000171729 CDS Human protein_coding chr1:15541884 chr1:15541888 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_50521 0 0 0 0 1 cytosol 0.500231643950913 0.500231643921089 0 5.96478422210112e-11 hm5C_site_45873 DeepMRMD:0;iRNA_m5C:5.96478422210112e-11 45874 chr6 110301103 110301103 1 + A C STAD 110301099 + 110301079 110301119 41 ACGCGCACCAGATCGCGCTGCAGCAGCACTGCCTGGCGCCA ACGCGCACCAGATCGCGCTGCAGCCGCACTGCCTGGCGCCA < 41bp 0.839688075754774 0.490075270253642 0.85213685 0.88384867 prediction 0.679376151509547 Functional Loss - GPR6 ENSG00000146360 CDS Human protein_coding chr6:110301099 chr6:110301103 nonsynonymous SNV 0.845 2 25 hm5C_associated_SNPs_50522 0 0 0 0 0 unknown 0.500233196797913 0.500214039365697 0 3.83148644333975e-05 hm5C_site_45874 DeepMRMD:0;iRNA_m5C:3.83148644333975e-05 45875 chr1 161683078 161683078 1 + G T LUAD 161683075 + 161683055 161683095 41 GCCTTCTTCTCAAACACATGCAGGATGTGAGAGTCCTCCTC GCCTTCTTCTCAAACACATGCAGTATGTGAGAGTCCTCCTC < 41bp 0.8396842720192 0.49456643190096 0.74750316 0.11973333 prediction 0.679368544038401 Functional Loss - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161683075 chr1:161683078 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_50523 0 0 0 0 0 Endoplasmic reticulum 0.500121416442237 0.500234822877873 0.49500632 0 hm5C_site_45875 DeepMRMD:0.49500632;iRNA_m5C:0 45876 chr17 27065227 27065227 1 + G T BRCA 27065224 + 27065204 27065244 41 AGTCGGGTGTGACCATCAAGCACGTGGCCTGTGGGGACTTC AGTCGGGTGTGACCATCAAGCACTTGGCCTGTGGGGACTTC < 41bp 0.839659354546216 0.483802813155563 0.40241912 0.13209435 prediction 0.679318709092432 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27065224 chr17:27065227 nonsynonymous SNV 0.944 3 24 hm5C_associated_SNPs_50524 0 0 1 0 1 Nucleus 0.500231643927917 0.500232761365384 0 0 hm5C_site_45876 DeepMRMD:0;iRNA_m5C:0 45877 chr14 24877435 24877435 1 + G T LUSC 24877432 + 24877412 24877452 41 TGCAGCTGCCCCCAGCGGTCCAGGAGCTGCTGCTGAGCCTG TGCAGCTGCCCCCAGCGGTCCAGTAGCTGCTGCTGAGCCTG < 41bp 0.862480297735861 0.522831814665382 0.9053456 0.5267919 prediction 0.679296966140959 Functional Loss - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24877432 chr14:24877435 stopgain 1.000 0 24 hm5C_associated_SNPs_50525 0 0 0 0 0 Exosome 0.500231643672413 0.500231643921093 0.7571074 0 hm5C_site_45877 DeepMRMD:0.7571074;iRNA_m5C:0 Post bronchodilator FEV1/FVC ratio 45878 chr14 52186962 52186962 1 + A C LGG 52186958 + 52186938 52186978 41 TTGAGGCAGACACCAAGCCCCGGGACACGGGGCCAGAAGAC TTGAGGCAGACACCAAGCCCCGGGCCACGGGGCCAGAAGAC < 41bp 0.862432646006245 0.522820435320394 0.9158545 0.9048592 prediction 0.679224421371702 Functional Loss - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52186958 chr14:52186962 nonsynonymous SNV 0.588 1 25 hm5C_associated_SNPs_50526 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0.0219906000000001 0 hm5C_site_45878 DeepMRMD:0.0219906000000001;iRNA_m5C:0 45879 chr22 36124908 36124908 1 + G T UCEC 36124905 + 36124885 36124925 41 GCCAGCCCCACCAGCACCAGCAAGAAAGGGGAGACAGGCCC GCCAGCCCCACCAGCACCAGCAATAAAGGGGAGACAGGCCC < 41bp 0.842667753312889 0.503070170598842 0.6553804 0.39034933 prediction 0.679195165428094 Functional Loss - APOL5 ENSG00000128313 CDS Human protein_coding chr22:36124905 chr22:36124908 nonsynonymous SNV 0.791 1 24 hm5C_associated_SNPs_50527 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.3107608 0 hm5C_site_45879 DeepMRMD:0.3107608;iRNA_m5C:0 45880 chr2 27728635 27728635 1 + G T UCEC 27728632 + 27728612 27728652 41 ATGAAAGGTGGAAGTGCCACCAAGATTCTGCTGGAAACCCT ATGAAAGGTGGAAGTGCCACCAATATTCTGCTGGAAACCCT < 41bp 0.846526884358062 0.506959672488494 0.5001024 0.14732176 prediction 0.679134423739137 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27728632 chr2:27728635 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50528 0 0 0 0 2 cytosol 0.500231643921133 0.500231957078121 0.000204799999999894 0 hm5C_site_45880 DeepMRMD:0.000204799999999894;iRNA_m5C:0 Post bronchodilator FEV1/FVC ratio 45881 chr2 119752052 119752052 1 + G T LUSC 119752049 + 119752029 119752069 41 CCAAGAATAGCTGGGGCCATCATGACTGCAGCCACGAGGAG CCAAGAATAGCTGGGGCCATCATTACTGCAGCCACGAGGAG < 41bp 0.83955891724343 0.490886935463902 0.50705636 0.26352203 prediction 0.67911783448686 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119752049 chr2:119752052 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_50529 0 0 0 0 1 exosome 0.500231644121332 0.500231643921092 0.01411272 4.00478539219762e-10 hm5C_site_45881 DeepMRMD:0.01411272;iRNA_m5C:4.00478539219762e-10 45882 chr3 11059603 11059603 1 + G T LUAD 11059600 + 11059580 11059620 41 TCTTCCTGCTGGAGTGCTCCCTGGGCCAGTACACCTCCATC TCTTCCTGCTGGAGTGCTCCCTGTGCCAGTACACCTCCATC < 41bp 0.860770341745608 0.521213273368227 0.8350851 0.29895818 prediction 0.679114136754761 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11059600 chr3:11059603 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_50530 0 0 0 0 1 Endoplasmic reticulum 0.500231643921124 0.500231643921092 0.6701702 6.26165785888588e-14 hm5C_site_45882 DeepMRMD:0.6701702;iRNA_m5C:6.26165785888588e-14 45883 chr16 31422671 31422671 1 + G T LUAD 31422668 + 31422648 31422688 41 ACGCTGTTCTCCGTGGTGAGCAGGGCCACCCCTGGGGCCGC ACGCTGTTCTCCGTGGTGAGCAGTGCCACCCCTGGGGCCGC < 41bp 0.877426600997575 0.53787088318787 0.9124919 0.2884436 prediction 0.679111435619411 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422668 chr16:31422671 nonsynonymous SNV 0.973 3 24 hm5C_associated_SNPs_50531 0 0 0 0 2 nucleolus 0.500231643921092 0.500231643921091 0.8249838 1.99840144432528e-15 hm5C_site_45883 DeepMRMD:0.8249838;iRNA_m5C:1.99840144432528e-15 45884 chr6 42147087 42147087 1 + G T UCEC 42147084 + 42147064 42147104 41 ACCCGCATCGTGCGCAGGCTCCAGAATGGCGAGCAAGACGA ACCCGCATCGTGCGCAGGCTCCATAATGGCGAGCAAGACGA < 41bp 0.849719222979882 0.510175379297272 0.45888278 0.22119659 prediction 0.67908768736522 Functional Loss - GUCA1A ENSG00000048545 CDS Human protein_coding chr6:42147084 chr6:42147087 nonsynonymous SNV 0.963 0 24 hm5C_associated_SNPs_50532 0 0 0 0 0 Cytosol 0.500231643921786 0.500231643949851 0 0 hm5C_site_45884 DeepMRMD:0;iRNA_m5C:0 45885 chr4 53731539 53731539 1 + A C COAD 53731535 + 53731515 53731555 41 GCCTGAGCTGCAGTGAACAGCTGAATAGGTGCATTCGCTGG GCCTGAGCTGCAGTGAACAGCTGACTAGGTGCATTCGCTGG < 41bp 0.839541207561732 0.48968801192128 0.17126995 0.18237668 prediction 0.679082415123465 Functional Loss - RASL11B ENSG00000128045 CDS Human protein_coding chr4:53731535 chr4:53731539 nonsynonymous SNV 0.655 1 25 hm5C_associated_SNPs_50533 0 0 0 0 1 exosome 0.500231643921077 0.500231643921072 0 1.06581410364015e-14 hm5C_site_45885 DeepMRMD:0;iRNA_m5C:1.06581410364015e-14 45886 chr19 36728049 36728049 1 + G T LAML 36728046 + 36728026 36728066 41 TGTGCATGTGAGAAGCCATACAGGGGAGAAGCCCTATGGTT TGTGCATGTGAGAAGCCATACAGTGGAGAAGCCCTATGGTT < 41bp 0.851776187689833 0.512248058737074 0.49319458 0.10496715 prediction 0.679056257905518 Functional Loss - ZNF146 ENSG00000167635 CDS Human protein_coding chr19:36728046 chr19:36728049 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50534 0 0 1 0 0 Ribosome 0.500231644092253 0.500231630714715 0 2.67550765986613e-08 hm5C_site_45886 DeepMRMD:0;iRNA_m5C:2.67550765986613e-08 45887 chr11 55032628 55032628 1 + G T LUSC 55032625 + 55032605 55032645 41 CTTGCCAGAAAAGCCAGTCTCTGGCTATTCCTGAGCTCTGA CTTGCCAGAAAAGCCAGTCTCTGTCTATTCCTGAGCTCTGA < 41bp 0.839501854339266 0.489502748874557 0.12489945 0.07634279 prediction 0.679003708678531 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55032625 chr11:55032628 nonsynonymous SNV 0.072 1 24 hm5C_associated_SNPs_50535 0 0 0 0 0 unknown 0.500231643823968 0.500231643921089 0 0 hm5C_site_45887 DeepMRMD:0;iRNA_m5C:0 45888 chr19 39936605 39936605 1 + G T UCEC 39936602 + 39936582 39936622 41 AGCAGTGACGGCGAGGAGGCCGAGGTCTGTGGCTGGGGCGC AGCAGTGACGGCGAGGAGGCCGATGTCTGTGGCTGGGGCGC < 41bp 0.846123874101662 0.50666546905977 0.88650286 0.57087296 prediction 0.678916810083785 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39936602 chr19:39936605 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_50536 0 0 1 0 3 Nucleus 0.500231629970533 0.499649580846933 0.6312598 0.000463259941065886 hm5C_site_45888 DeepMRMD:0.6312598;iRNA_m5C:0.000463259941065886 45889 chr2 132285734 132285734 1 + A C STAD 132285730 + 132285710 132285750 41 GCCTGCAGTTCCTGCAGCAGCAGCACTCGGAGATGCTGGCC GCCTGCAGTTCCTGCAGCAGCAGCCCTCGGAGATGCTGGCC < 41bp 0.839432558624422 0.473132006522158 0.30599064 0.20709845 prediction 0.678865117248844 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132285730 chr2:132285734 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_50537 0 0 0 0 0 nucleolus 0.500233025749994 0.500231644159373 0 2.76318124270425e-06 hm5C_site_45889 DeepMRMD:0;iRNA_m5C:2.76318124270425e-06 45890 chr12 69652407 69652407 1 + A C SARC 69652403 + 69652383 69652423 41 ACCACGTCCACCCTTAGGTCCTCCAGGCCCACCTGGTCCAC ACCACGTCCACCCTTAGGTCCTCCCGGCCCACCTGGTCCAC < 41bp 0.88534212791013 0.545970416992949 0.93932927 0.08803901 prediction 0.678743421834363 Functional Loss - CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69652403 chr12:69652407 synonymous SNV . 0 25 hm5C_associated_SNPs_50538 0 0 1 0 0 Nucleus 0.500231643920619 0.500231643921084 0.87865854 0 hm5C_site_45890 DeepMRMD:0.87865854;iRNA_m5C:0 45891 chr17 7323773 7323773 1 + G T CESC 7323770 + 7323750 7323790 41 ACTGCAACAGCAACAGCTGCCAGGACCTGGGCAACTCTGTC ACTGCAACAGCAACAGCTGCCAGTACCTGGGCAACTCTGTC < 41bp 0.843510083873628 0.504150406312492 0.59213996 0.112317085 prediction 0.678719355122272 Functional Loss - SPEM1 ENSG00000181323 CDS Human protein_coding chr17:7323770 chr17:7323773 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_50539 0 0 0 0 1 exosome 0.500241748141137 0.500231698414243 0.18427992 2.00994537866706e-05 hm5C_site_45891 DeepMRMD:0.18427992;iRNA_m5C:2.00994537866706e-05 45892 chr2 74043271 74043271 1 + G T LIHC 74043268 + 74043248 74043288 41 CCGTGCAAGTTTTCCATGCACTCGGGAAAAAGATCGATATG CCGTGCAAGTTTTCCATGCACTCTGGAAAAAGATCGATATG < 41bp 0.85803762609813 0.518684126330386 0.06605548 0.020608962 prediction 0.678706999535488 Functional Loss - C2orf78 ENSG00000187833 CDS Human protein_coding chr2:74043268 chr2:74043271 nonsynonymous SNV 0.264 4 24 hm5C_associated_SNPs_50540 0 0 0 0 0 unknown 0.500231643945548 0.500231629587625 0 2.87158468115223e-08 hm5C_site_45892 DeepMRMD:0;iRNA_m5C:2.87158468115223e-08 45893 chr10 103919723 103919723 1 + G T UCEC 103919720 + 103919700 103919740 41 TCTCTGGGAACCCAGCCTCCCAAGAAGGCTGTGGAGAAGCA TCTCTGGGAACCCAGCCTCCCAATAAGGCTGTGGAGAAGCA < 41bp 0.839346134339005 0.489211049504718 0.24040458 0.13853616 prediction 0.67869226867801 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919720 chr10:103919723 nonsynonymous SNV 0.279 4 24 hm5C_associated_SNPs_50541 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643916746 0 8.69371241662975e-12 hm5C_site_45893 DeepMRMD:0;iRNA_m5C:8.69371241662975e-12 45894 chr7 149558389 149558389 1 + G T UCEC 149558386 + 149558366 149558406 41 GAGGCCTTGTGGAAAAGTTCCAGGAGGTCATCCCGCAGCTG GAGGCCTTGTGGAAAAGTTCCAGTAGGTCATCCCGCAGCTG < 41bp 0.863089360464952 0.523764927981184 0.8669976 0.4005388 prediction 0.678648864967536 Functional Loss - ZNF862 ENSG00000106479 CDS Human protein_coding chr7:149558386 chr7:149558389 stopgain 0.469 1 24 hm5C_associated_SNPs_50542 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.7339952 0 hm5C_site_45894 DeepMRMD:0.7339952;iRNA_m5C:0 45895 chr1 206224451 206224451 1 + G T UCEC 206224448 + 206224428 206224468 41 GCAAACCTTGCTCATGGATTCTGGGCCTCTGTGGGATGCCA GCAAACCTTGCTCATGGATTCTGTGCCTCTGTGGGATGCCA < 41bp 0.839314955337141 0.496971141797748 0.29488719 0.06799865 prediction 0.678629910674283 Functional Loss - AVPR1B ENSG00000198049 CDS Human protein_coding chr1:206224448 chr1:206224451 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50543 0 0 0 0 0 unknown 0.500231643921092 0.50023164382833 0 1.85524706708406e-10 hm5C_site_45895 DeepMRMD:0;iRNA_m5C:1.85524706708406e-10 45896 chr17 7948663 7948663 1 + G T SARC 7948660 + 7948640 7948680 41 GCCCCAATGACCCTGCTATACCAGAGCCCAGGCTGCGGGCC GCCCCAATGACCCTGCTATACCATAGCCCAGGCTGCGGGCC < 41bp 0.839295216015744 0.474591279655596 0.74473965 0.23395237 prediction 0.678590432031489 Functional Loss - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7948660 chr17:7948663 nonsynonymous SNV 0.014 2 24 hm5C_associated_SNPs_50544 0 0 0 0 1 exosome 0.500231643921092 0.500231643921093 0.4894793 0 hm5C_site_45896 DeepMRMD:0.4894793;iRNA_m5C:0 45897 chr19 1219381 1219381 1 + G T LUSC 1219378 + 1219358 1219398 41 AGGAAATGCTGGACAGCGTGCCGGAGAAGCGTTTCCCAGTG AGGAAATGCTGGACAGCGTGCCGTAGAAGCGTTTCCCAGTG < 41bp 0.839293831011722 0.493420144282957 0.8309299 0.51470864 prediction 0.678587662023444 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1219378 chr19:1219381 stopgain 0.914 1 24 hm5C_associated_SNPs_50545 0 0 1 0 1 Ribosome 0.500231643921297 0.500231643921092 0.63244252 4.09450251481758e-13 hm5C_site_45897 DeepMRMD:0.63244252;iRNA_m5C:4.09450251481758e-13 45898 chr16 89985861 89985861 1 + G T READ 89985858 + 89985838 89985878 41 CTGGTGGTGGCCACCATCGCCAAGAACCGGAACCTGCACTC CTGGTGGTGGCCACCATCGCCAATAACCGGAACCTGCACTC < 41bp 0.839290730155077 0.490635876791396 0.90137255 0.58013755 prediction 0.678581460310155 Functional Loss - MC1R ENSG00000198211;ENSG00000258839 CDS Human other chr16:89985858 chr16:89985861 nonsynonymous SNV 0.907 1 24 hm5C_associated_SNPs_50546 0 0 1 0 0 Endoplasmic reticulum 0.500231655567699 0.50023170267648 0.64247 0 hm5C_site_45898 DeepMRMD:0.64247;iRNA_m5C:0 45899 chr9 140110248 140110248 1 + G T UCEC 140110245 + 140110225 140110265 41 CCATCCAGGAGCGTGTGGCCCAGGGCCAGACTGGTGAGCAC CCATCCAGGAGCGTGTGGCCCAGTGCCAGACTGGTGAGCAC < 41bp 0.855055243207559 0.515764875751463 0.8743175 0.5938278 prediction 0.678580734912191 Functional Loss - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140110245 chr9:140110248 nonsynonymous SNV 0.141 4 24 hm5C_associated_SNPs_50547 0 0 1 0 1 chromatin 0.500238461561577 0.500231648122128 0.5609794 1.36268788999416e-05 hm5C_site_45899 DeepMRMD:0.5609794;iRNA_m5C:1.36268788999416e-05 45900 chr3 147128108 147128108 1 + G T LUSC 147128105 + 147128085 147128125 41 GGCCTTCACGTCGCAGGCGCCAGGCTACGCGGCTGCTGCGG GGCCTTCACGTCGCAGGCGCCAGTCTACGCGGCTGCTGCGG < 41bp 0.83927630314617 0.492461573711321 0.92095566 0.8313192 prediction 0.67855260629234 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147128105 chr3:147128108 nonsynonymous SNV 0.982 5 24 hm5C_associated_SNPs_50548 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.17927292 0 hm5C_site_45900 DeepMRMD:0.17927292;iRNA_m5C:0 45901 chr3 46307622 46307622 1 + G T UCEC 46307619 + 46307599 46307639 41 ACAGGCACTTGCTCATGCACCTGGGCAGATACATCCCATTC ACAGGCACTTGCTCATGCACCTGTGCAGATACATCCCATTC < 41bp 0.851801939804233 0.512543130700293 0.30165708 0.019925922 prediction 0.67851761820788 Functional Loss - CCR3 ENSG00000183625 CDS Human protein_coding chr3:46307619 chr3:46307622 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_50549 0 0 0 0 0 exosome 0.50023152866419 0.500231644132438 0 0 hm5C_site_45901 DeepMRMD:0;iRNA_m5C:0 45902 chr3 129817127 129817127 1 + A C HNSC 129817123 + 129817103 129817143 41 GAAGGCAAGCTAAACCAGTTCCGGAAGAACCTGCGGGAGTC GAAGGCAAGCTAAACCAGTTCCGGCAGAACCTGCGGGAGTC < 41bp 0.839258310709816 0.487848537626616 0.81203836 0.47768646 prediction 0.678516621419631 Functional Loss - FAM86HP ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129817123 chr3:129817127 . . 0 25 hm5C_associated_SNPs_50550 0 0 0 0 1 unknown 0.500231643921092 0.500231643921103 0.62407672 0 hm5C_site_45902 DeepMRMD:0.62407672;iRNA_m5C:0 45903 chr20 9510467 9510467 1 + G T UCEC 9510464 + 9510444 9510484 41 TCCCAGTATAAGCACATGGGCTAGAGGCCGTTAGGCAGGCA TCCCAGTATAAGCACATGGGCTATAGGCCGTTAGGCAGGCA < 41bp 0.842885919301895 0.503650261375789 0.25538123 0.123377055 prediction 0.678471315852212 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9510464 chr20:9510467 stoploss 0.793 0 24 hm5C_associated_SNPs_50551 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_45903 DeepMRMD:0;iRNA_m5C:0 45904 chr6 134212874 134212874 1 + G T CESC 134212871 + 134212851 134212891 41 ACGTGGCCCTTTATGGTGGCCGGGAAACCCGAGAGTGACCT ACGTGGCCCTTTATGGTGGCCGGTAAACCCGAGAGTGACCT < 41bp 0.8468200422581 0.507595140863219 0.87249947 0.53807044 prediction 0.678449802789761 Functional Loss - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134212871 chr6:134212874 synonymous SNV . 0 24 hm5C_associated_SNPs_50552 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.66885806 0 hm5C_site_45904 DeepMRMD:0.66885806;iRNA_m5C:0 45905 chr17 45299793 45299793 1 + G T UCEC 45299790 + 45299770 45299810 41 TGGAGCAGCTGTTAGCTGGGCAAGAGGATGCCAATGGCTGC TGGAGCAGCTGTTAGCTGGGCAATAGGATGCCAATGGCTGC < 41bp 0.83920479836692 0.489095378169456 0.8452188 0.6517781 prediction 0.67840959673384 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45299790 chr17:45299793 stopgain 0.985 1 24 hm5C_associated_SNPs_50553 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.3868814 0 hm5C_site_45905 DeepMRMD:0.3868814;iRNA_m5C:0 45906 chr1 156702150 156702150 1 + G T SARC 156702147 + 156702127 156702167 41 CCTGGCCTTTACCCGGATGCCTGGCTTTCAGACCCCCTCAG CCTGGCCTTTACCCGGATGCCTGTCTTTCAGACCCCCTCAG < 41bp 0.860140327811631 0.52097645631685 0.09925315 0.057150066 prediction 0.678327742989564 Functional Loss - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702147 chr1:156702150 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_50554 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_45906 DeepMRMD:0;iRNA_m5C:0 45907 chr1 206653222 206653222 1 + A C UCEC 206653218 + 206653198 206653238 41 GGTCTTTGTCTGCAGCTGCTCTGGACGTCCCCAAGTTCGTC GGTCTTTGTCTGCAGCTGCTCTGGCCGTCCCCAAGTTCGTC < 41bp 0.839137965868785 0.464335240092122 0.09717879 0.1902085 prediction 0.678275931737571 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206653218 chr1:206653222 nonsynonymous SNV 0.828 2 25 hm5C_associated_SNPs_50555 0 0 0 0 2 Cytosol 0.500231646504225 0.500231825112985 0 0 hm5C_site_45907 DeepMRMD:0;iRNA_m5C:0 45908 chr2 113763575 113763575 1 + A C rs895497 113763571 + 113763551 113763591 41 CATTGAAAATTGACACACCTCAGCAGGGGAGCATTCAGGAT CATTGAAAATTGACACACCTCAGCCGGGGAGCATTCAGGAT < 41bp 0.865607031158191 0.526486488506933 0.035678685 0.034057707 prediction 0.678241085302514 Functional Loss - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763571 chr2:113763575 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_50556 0 0 0 0 2 exosome 0.500231643921135 0.500231643912958 0 1.63538071973335e-11 hm5C_site_45908 DeepMRMD:0;iRNA_m5C:1.63538071973335e-11 45909 chr16 69184518 69184518 1 + A C ESCA 69184514 + 69184494 69184534 41 CTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGT CTGGTCCCTGTGACATCTAACAGCCGTGAGAAGCAGTGGGT < 41bp 0.839101762692873 0.46409685459319 0.85414207 0.78644794 prediction 0.678203525385746 Functional Loss - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69184514 chr16:69184518 nonsynonymous SNV 0.879 0 25 hm5C_associated_SNPs_50557 0 0 1 0 2 Cytosol 0.500231644010993 0.500231643841428 0.13538826 3.39128947146605e-10 hm5C_site_45909 DeepMRMD:0.13538826;iRNA_m5C:3.39128947146605e-10 45910 chr6 26156945 26156945 1 + G T BLCA 26156942 + 26156922 26156962 41 TCGGGTTCCTTCAAACTCAACAAGAAGGCGGCCTCTGGGGA TCGGGTTCCTTCAAACTCAACAATAAGGCGGCCTCTGGGGA < 41bp 0.844317090492649 0.50522538403401 0.29288 0.0957762 prediction 0.678183412917277 Functional Loss - HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26156942 chr6:26156945 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_50558 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_45910 DeepMRMD:0;iRNA_m5C:0 45911 chr2 219483388 219483388 1 + G T LUAD 219483385 + 219483365 219483405 41 CAGAGGAGCTCCCCCTGGAGCAGGGCTTCACCATTGTCTTC CAGAGGAGCTCCCCCTGGAGCAGTGCTTCACCATTGTCTTC < 41bp 0.868354743060661 0.529309270986939 0.92469746 0.08825582 prediction 0.678090944147444 Functional Loss - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219483385 chr2:219483388 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_50559 0 0 0 0 1 chromatin 0.50023164392109 0.500231643921061 0.84939492 5.83977310952832e-14 hm5C_site_45911 DeepMRMD:0.84939492;iRNA_m5C:5.83977310952832e-14 45912 chr1 110169497 110169497 1 + G T UCEC 110169494 + 110169474 110169514 41 GCTGAAAAGCCTCTGGAGACCCGGACCTATGAACAGGGCCC GCTGAAAAGCCTCTGGAGACCCGTACCTATGAACAGGGCCC < 41bp 0.843768556906992 0.504733138481509 0.5619595 0.19347787 prediction 0.678070836850967 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110169494 chr1:110169497 synonymous SNV . 0 24 hm5C_associated_SNPs_50560 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.123919 0 hm5C_site_45912 DeepMRMD:0.123919;iRNA_m5C:0 45913 chr17 72368403 72368403 1 + G T LUAD 72368400 + 72368380 72368420 41 GGCCGGAGTGGGCTGCAGCCCCGGGTGGGCAAGAGCACAGC GGCCGGAGTGGGCTGCAGCCCCGTGTGGGCAAGAGCACAGC < 41bp 0.839034161830725 0.479024401949181 0.5309236 0.09917998 prediction 0.67806832366145 Functional Loss - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72368400 chr17:72368403 synonymous SNV . 0 24 hm5C_associated_SNPs_50561 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0618472000000001 0 hm5C_site_45913 DeepMRMD:0.0618472000000001;iRNA_m5C:0 45914 chrX 12939888 12939888 1 + A C CESC 12939884 + 12939864 12939904 41 GCTACCACCTTGAAGAGAGCCGAGACAAAAACGTTCTCCTT GCTACCACCTTGAAGAGAGCCGAGCCAAAAACGTTCTCCTT < 41bp 0.839033429737094 0.484395872327925 0.7058673 0.30847204 prediction 0.678066859474188 Functional Loss - TLR8 ENSG00000101916 CDS Human protein_coding chrX:12939884 chrX:12939888 nonsynonymous SNV 0.968 0 25 hm5C_associated_SNPs_50562 0 0 0 0 0 nucleolus 0.50023166420808 0.500231647319752 0.4117346 3.37766556945951e-08 hm5C_site_45914 DeepMRMD:0.4117346;iRNA_m5C:3.37766556945951e-08 45915 chr3 133119134 133119134 1 + G T LUAD 133119131 + 133119111 133119151 41 CCCAGTGGGTGCATAGGTGGCTTGGGTGCCCGTGTGACCCG CCCAGTGGGTGCATAGGTGGCTTTGGTGCCCGTGTGACCCG < 41bp 0.839011290137038 0.486495145307238 0.2953847 0.11410621 prediction 0.678022580274075 Functional Loss - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133119131 chr3:133119134 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_50563 0 0 0 0 0 exosome 0.5002316439211 0.500231643921076 0 4.68514116391816e-14 hm5C_site_45915 DeepMRMD:0;iRNA_m5C:4.68514116391816e-14 45916 chr20 55033677 55033677 1 + G T LUAD 55033674 + 55033654 55033694 41 AGTCACCTCTGCAGCCTGCTCAAGGACGTAGCGCTGGCCAC AGTCACCTCTGCAGCCTGCTCAATGACGTAGCGCTGGCCAC < 41bp 0.873147969709543 0.534158306676872 0.8845424 0.1416578 prediction 0.677979326065341 Functional Loss - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55033674 chr20:55033677 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_50564 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921101 0.7690848 0 hm5C_site_45916 DeepMRMD:0.7690848;iRNA_m5C:0 45917 chr12 57892220 57892220 1 + A C BLCA 57892216 + 57892196 57892236 41 CTTGCAGGTACTCTCGCCTCCGCCAGTGGAACACCCTCTAT CTTGCAGGTACTCTCGCCTCCGCCCGTGGAACACCCTCTAT < 41bp 0.838986616062516 0.459670949167757 0.3383064 0.17082971 prediction 0.677973232125033 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57892216 chr12:57892220 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_50565 0 0 1 0 1 Cytosol 0.500231643905047 0.500231643921144 0 0 hm5C_site_45917 DeepMRMD:0;iRNA_m5C:0 45918 chr20 49575574 49575574 1 + G T LUAD 49575571 + 49575551 49575591 41 GATGAGATTCTGCGCTATAGCCGGCAGCTAGTGCTGCCCGA GATGAGATTCTGCGCTATAGCCGTCAGCTAGTGCTGCCCGA < 41bp 0.838921224279305 0.499394027170229 0.9011259 0.49693137 prediction 0.67784244855861 Functional Loss - MOCS3 ENSG00000124217 CDS Human protein_coding chr20:49575571 chr20:49575574 synonymous SNV . 0 24 hm5C_associated_SNPs_50566 0 0 0 0 0 Nucleus 0.50024129146613 0.500276561454979 0.8022518 0 hm5C_site_45918 DeepMRMD:0.8022518;iRNA_m5C:0 45919 chr9 4583137 4583137 1 + G T UCEC 4583134 + 4583114 4583154 41 AGTGCCGTGGGCCTGCCCGCCGAGGATGTCACCCTGATCAT AGTGCCGTGGGCCTGCCCGCCGATGATGTCACCCTGATCAT < 41bp 0.838892144016028 0.482392836349091 0.8984433 0.112443715 prediction 0.677784288032056 Functional Loss - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4583134 chr9:4583137 nonsynonymous SNV 0.944 0 24 hm5C_associated_SNPs_50567 0 0 0 0 2 chromatin 0.500231631557502 0.500231642134708 0.7968866 0 hm5C_site_45919 DeepMRMD:0.7968866;iRNA_m5C:0 45920 chr14 20249031 20249031 1 + G T BLCA 20249028 + 20249008 20249048 41 GTTACTTCTGTGACATCACACAGGTTGTCCGGATTGCCTGT GTTACTTCTGTGACATCACACAGTTTGTCCGGATTGCCTGT < 41bp 0.838892124199282 0.492424887498122 0.7099949 0.17282605 prediction 0.677784248398563 Functional Loss - OR4M1 ENSG00000176299 CDS Human protein_coding chr14:20249028 chr14:20249031 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50568 0 0 0 0 0 unknown 0.500231602003876 0.500231766463499 0.4199898 0 hm5C_site_45920 DeepMRMD:0.4199898;iRNA_m5C:0 45921 chr11 64855517 64855517 1 + G T ACC 64855514 + 64855494 64855534 41 GCCCTCATGTCTCGCCTAGGCCGGGCCGCAGCTGACAGCGA GCCCTCATGTCTCGCCTAGGCCGTGCCGCAGCTGACAGCGA < 41bp 0.838890591314805 0.483758792500749 0.48538753 0.12725297 prediction 0.67778118262961 Functional Loss - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64855514 chr11:64855517 synonymous SNV . 0 24 hm5C_associated_SNPs_50569 0 0 1 0 0 Ribosome 0.500231643921111 0.500231643922916 0 0 hm5C_site_45921 DeepMRMD:0;iRNA_m5C:0 45922 chr12 113534574 113534574 1 + A C SKCM 113534570 + 113534550 113534590 41 AGAAGACTCATCTTCACTATCGGCACGTCCAACACCACGGG AGAAGACTCATCTTCACTATCGGCCCGTCCAACACCACGGG < 41bp 0.838887299264081 0.47267948747206 0.84739506 0.83667076 prediction 0.677774598528162 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113534570 chr12:113534574 nonsynonymous SNV 0.389 2 25 hm5C_associated_SNPs_50570 0 0 0 0 1 Endoplasmic reticulum 0.500231659798395 0.500231643847213 0.0214486 3.19023631956128e-08 hm5C_site_45922 DeepMRMD:0.0214486;iRNA_m5C:3.19023631956128e-08 45923 chr6 35434060 35434060 1 + G T UCEC 35434057 + 35434037 35434077 41 GGCTGGGCCTGGCTATGGCCCTAGAACCTAACACCACCTTC GGCTGGGCCTGGCTATGGCCCTATAACCTAACACCACCTTC < 41bp 0.838875546133906 0.496979715831733 0.15651101 0.2752192 prediction 0.677751092267811 Functional Loss - FANCE ENSG00000112039 CDS Human protein_coding chr6:35434057 chr6:35434060 stopgain 0.985 0 24 hm5C_associated_SNPs_50571 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_45923 DeepMRMD:0;iRNA_m5C:0 45924 chr4 134073102 134073102 1 + G T LUSC 134073099 + 134073079 134073119 41 AGCCGGGTTACCTGCTCACCCGCGTGGCCGCCGTGGACGCG AGCCGGGTTACCTGCTCACCCGCTTGGCCGCCGTGGACGCG < 41bp 0.854006218979989 0.515133713524387 0.29931188 0.06533721 prediction 0.677745010911204 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134073099 chr4:134073102 nonsynonymous SNV 0.894 1 24 hm5C_associated_SNPs_50572 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_45924 DeepMRMD:0;iRNA_m5C:0 45925 chr17 40717938 40717938 1 + G T UCEC 40717935 + 40717915 40717955 41 TGTCTGAAGGTGGAGAAAGCCTGGGCCCTCTTGCAGAAGCG TGTCTGAAGGTGGAGAAAGCCTGTGCCCTCTTGCAGAAGCG < 41bp 0.838813101139153 0.484480454470631 0.3882305 0.07281041 prediction 0.677626202278306 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40717935 chr17:40717938 nonsynonymous SNV 0.960 4 24 hm5C_associated_SNPs_50573 0 0 1 0 1 Ribosome 0.500231643921169 0.500231643910794 0 2.07496242410343e-11 hm5C_site_45925 DeepMRMD:0;iRNA_m5C:2.07496242410343e-11 45926 chr22 41077905 41077905 1 + G T UCEC 41077902 + 41077882 41077922 41 AGCAACGCTCAGACGGCTGACGAGGAGAGGACAGAAAGCAA AGCAACGCTCAGACGGCTGACGATGAGAGGACAGAAAGCAA < 41bp 0.851877873293742 0.513083904874331 0.48743522 0.20420164 prediction 0.677587936838822 Functional Loss - MCHR1 ENSG00000128285 CDS Human protein_coding chr22:41077902 chr22:41077905 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_50574 0 0 0 0 0 exosome 0.500231644029035 0.500232707044465 0 0 hm5C_site_45926 DeepMRMD:0;iRNA_m5C:0 45927 chr15 38591692 38591692 1 + G T LUSC 38591689 + 38591669 38591709 41 CTGTCTTCAAAGTCCCTCATCAGGAAGAGAATGGCTGTGCT CTGTCTTCAAAGTCCCTCATCAGTAAGAGAATGGCTGTGCT < 41bp 0.838790187236932 0.499600051402571 0.68880737 0.20054904 prediction 0.677580374473863 Functional Loss - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38591689 chr15:38591692 stopgain 1.000 1 24 hm5C_associated_SNPs_50575 0 0 1 0 1 Ribosome 0.500231644082837 0.500231616288378 0.37761474 5.55889179132407e-08 hm5C_site_45927 DeepMRMD:0.37761474;iRNA_m5C:5.55889179132407e-08 45928 chr6 3850195 3850195 1 + G T LGG 3850192 + 3850172 3850212 41 TCGCAGGTGGACAAGAGGTTCTCGGCGCATTACGACGCCGT TCGCAGGTGGACAAGAGGTTCTCTGCGCATTACGACGCCGT < 41bp 0.842967676475427 0.504182119488869 0.6962753 0.31820956 prediction 0.677571113973115 Functional Loss - FAM50B ENSG00000145945 CDS Human protein_coding chr6:3850192 chr6:3850195 synonymous SNV . 0 24 hm5C_associated_SNPs_50576 0 0 0 0 0 exosome 0.500231643920343 0.500231643909291 0.3925506 2.21047624648918e-11 hm5C_site_45928 DeepMRMD:0.3925506;iRNA_m5C:2.21047624648918e-11 45929 chr12 52376575 52376575 1 + G T CESC 52376572 + 52376552 52376592 41 CAAGGGAGGAAGGGGAAGAGCAAGATTTTTATTCCCACTGA CAAGGGAGGAAGGGGAAGAGCAATATTTTTATTCCCACTGA < 41bp 0.849891804587365 0.511113746663176 0.8129991 0.60231113 prediction 0.677556115848379 Functional Loss - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52376572 chr12:52376575 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_50577 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921084 0.42137594 1.77635683940025e-14 hm5C_site_45929 DeepMRMD:0.42137594;iRNA_m5C:1.77635683940025e-14 45930 chr2 88472750 88472750 1 + G T LUSC 88472747 + 88472727 88472767 41 TTCTCTGGCTATGCACCTGACGGGGGCCTCTTTATGCCTGA TTCTCTGGCTATGCACCTGACGGTGGCCTCTTTATGCCTGA < 41bp 0.84494728308745 0.506189175204812 0.9295421 0.14029533 prediction 0.677516215765277 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88472747 chr2:88472750 synonymous SNV . 0 24 hm5C_associated_SNPs_50578 0 0 0 0 0 exosome 0.500231643867426 0.500231643738515 0.8590842 2.57822874161207e-10 hm5C_site_45930 DeepMRMD:0.8590842;iRNA_m5C:2.57822874161207e-10 45931 chr17 79769814 79769814 1 + G T UCEC 79769811 + 79769791 79769831 41 GCAGTGGTCAAGTGTCTGTTCGAGAACGTCCAGTGAGTATG GCAGTGGTCAAGTGTCTGTTCGATAACGTCCAGTGAGTATG < 41bp 0.857754239879889 0.519006514809042 0.24843016 0.11211282 prediction 0.677495450141695 Functional Loss - GCGR ENSG00000215644 CDS Human protein_coding chr17:79769811 chr17:79769814 nonsynonymous SNV 0.706 3 24 hm5C_associated_SNPs_50579 0 0 0 0 2 cytosol 0.500231644119114 0.500231630855181 0 2.65278672362257e-08 hm5C_site_45931 DeepMRMD:0;iRNA_m5C:2.65278672362257e-08 45932 chr16 56906698 56906698 1 + G T PAAD 56906695 + 56906675 56906715 41 GCCAACATATCTGGTGACCTCAAGGTGAGCAGAATACTTGC GCCAACATATCTGGTGACCTCAATGTGAGCAGAATACTTGC < 41bp 0.838729196897945 0.484760802077967 0.8622968 0.32687628 prediction 0.67745839379589 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56906695 chr16:56906698 nonsynonymous SNV 0.985 3 24 hm5C_associated_SNPs_50580 0 0 0 0 1 nucleus 0.500231644871063 0.500232995486092 0.7245936 0 hm5C_site_45932 DeepMRMD:0.7245936;iRNA_m5C:0 45933 chr11 57947502 57947502 1 + G T UCEC 57947499 + 57947479 57947519 41 CCTGTGGGGAGAGCTACACTCAAGAAGTGCTGATTATTATG CCTGTGGGGAGAGCTACACTCAATAAGTGCTGATTATTATG < 41bp 0.853038864502803 0.51431459560602 0.79198116 0.24676043 prediction 0.677448537793565 Functional Loss - OR9Q1 ENSG00000186509 CDS Human protein_coding chr11:57947499 chr11:57947502 stopgain 0.944 0 24 hm5C_associated_SNPs_50581 0 0 0 0 0 nucleus 0.500237018148736 0.500231641615279 0.58396232 1.07530669137823e-05 hm5C_site_45933 DeepMRMD:0.58396232;iRNA_m5C:1.07530669137823e-05 45934 chr17 56233261 56233261 1 + G T COAD 56233258 + 56233238 56233278 41 ACCCACATCATCGTGGTGTCCATGATCTTCATTCCCTGTAT ACCCACATCATCGTGGTGTCCATTATCTTCATTCCCTGTAT < 41bp 0.838688980300171 0.495537146397721 0.060171306 0.03830844 prediction 0.677377960600343 Functional Loss - OR4D1 ENSG00000141194 CDS Human protein_coding chr17:56233258 chr17:56233261 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_50582 0 0 0 0 0 unknown 0.500231503585496 0.500231643879943 0 0 hm5C_site_45934 DeepMRMD:0;iRNA_m5C:0 Periodontitis (CDC/AAP) 45935 chr7 99956480 99956480 1 + G T UCEC 99956477 + 99956457 99956497 41 CCTGGAGACGGGGCCACTTCCACGGGCAGTCCTTCTACAGC CCTGGAGACGGGGCCACTTCCACTGGCAGTCCTTCTACAGC < 41bp 0.866658626116275 0.527982364877075 0.9069718 0.1858333 prediction 0.6773525224784 Functional Loss - PILRB ENSG00000121716 CDS Human protein_coding chr7:99956477 chr7:99956480 nonsynonymous SNV 0.009 3 24 hm5C_associated_SNPs_50583 0 0 1 0 0 Cytosol 0.500231640622927 0.500231642717542 0.8139436 0 hm5C_site_45935 DeepMRMD:0.8139436;iRNA_m5C:0 45936 chr4 75937717 75937717 1 + G T BLCA 75937714 + 75937694 75937734 41 ATTGTACCACCGACCACCATCTGGACTAGCTCTCCACAAAA ATTGTACCACCGACCACCATCTGTACTAGCTCTCCACAAAA < 41bp 0.849854294644907 0.511180891963717 0.80989707 0.34079206 prediction 0.677346805362381 Functional Loss - PARM1 ENSG00000169116 CDS Human protein_coding chr4:75937714 chr4:75937717 nonsynonymous SNV 0.109 4 24 hm5C_associated_SNPs_50584 0 0 0 0 1 exosome 0.500231643921092 0.500231643921128 0.61979414 0 hm5C_site_45936 DeepMRMD:0.61979414;iRNA_m5C:0 45937 chr3 10885953 10885953 1 + G T LUAD 10885950 + 10885930 10885970 41 GAGCACATCGGGAACCTTCGCTGGGAGCTGGCCTTGTGTCT GAGCACATCGGGAACCTTCGCTGTGAGCTGGCCTTGTGTCT < 41bp 0.838655471887743 0.490654871587356 0.66268104 0.10963541 prediction 0.677310943775487 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10885950 chr3:10885953 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50585 0 0 1 0 2 cytosol 0.500231643921104 0.500231643527743 0.32536208 7.86721576773175e-10 hm5C_site_45937 DeepMRMD:0.32536208;iRNA_m5C:7.86721576773175e-10 45938 chr17 79941544 79941544 1 + G T rs147861765 79941541 + 79941521 79941561 41 AGCCGTGAGGGGCCTGAGAACATGGTGGGTCGTGCTCTGGG AGCCGTGAGGGGCCTGAGAACATTGTGGGTCGTGCTCTGGG < 41bp 0.838643894706766 0.483764353051407 0.8634184 0.43227127 prediction 0.677287789413532 Functional Loss - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79941541 chr17:79941544 nonsynonymous SNV 0.684 0 24 hm5C_associated_SNPs_50586 0 0 1 0 1 Ribosome 0.500231683810815 0.500231643921807 0.7268368 7.9778015749099e-08 hm5C_site_45938 DeepMRMD:0.7268368;iRNA_m5C:7.9778015749099e-08 45939 chr9 133760658 133760658 1 + G T LUAD 133760655 + 133760635 133760675 41 ATCAGCATCCTCGGCCCTGGCAGGGGACCAGCCGTCTTCCA ATCAGCATCCTCGGCCCTGGCAGTGGACCAGCCGTCTTCCA < 41bp 0.83858203598154 0.474628258074859 0.94913745 0.2837722 prediction 0.67716407196308 Functional Loss - ABL1 ENSG00000097007 CDS Human protein_coding chr9:133760655 chr9:133760658 nonsynonymous SNV 0.954 0 24 hm5C_associated_SNPs_50587 0 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0.500231643921092 0.8982749 4.44089209850063e-16 hm5C_site_45939 DeepMRMD:0.8982749;iRNA_m5C:4.44089209850063e-16 45940 chr14 93652974 93652974 1 + G T rs145078947 93652971 + 93652951 93652991 41 AATCGCCACCAGGCATTTGTCAAGGCTTCTAATCAGATCAG AATCGCCACCAGGCATTTGTCAATGCTTCTAATCAGATCAG < 41bp 0.841964033401116 0.503391559551168 0.87155104 0.19088998 prediction 0.677144947699895 Functional Loss - TMEM251 ENSG00000153485 CDS Human protein_coding chr14:93652971 chr14:93652974 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_50588 0 0 1 0 0 Ribosome 0.50023164392109 0.500231644516003 0.74310208 0 hm5C_site_45940 DeepMRMD:0.74310208;iRNA_m5C:0 45941 chr19 34887294 34887294 1 + G T STAD 34887291 + 34887271 34887311 41 CCCCATTGTGTGGGGGGAGCCAGGGACCAATGGCCAGCATG CCCCATTGTGTGGGGGGAGCCAGTGACCAATGGCCAGCATG < 41bp 0.862677685696555 0.524113108401064 0.91528964 0.15684831 prediction 0.677129154590983 Functional Loss - GPI ENSG00000105220;ENSG00000266953 CDS Human other chr19:34887291 chr19:34887294 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_50589 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.83057928 0 hm5C_site_45941 DeepMRMD:0.83057928;iRNA_m5C:0 Adverse response to chemotherapy (neutropenia/leucopenia) (gemcitabine) 45942 chr12 53581371 53581371 1 + A C rs200684657 53581367 + 53581347 53581387 41 GACTTCCGACGGGCAGTTTTCTCTATAGGCGCAAGGGGCCC GACTTCCGACGGGCAGTTTTCTCTCTAGGCGCAAGGGGCCC < 41bp 0.838540397310071 0.46243368468609 0.9413142 0.16813761 prediction 0.677080794620143 Functional Loss - ZNF740 ENSG00000139651 CDS Human protein_coding chr12:53581367 chr12:53581371 synonymous SNV . 0 25 hm5C_associated_SNPs_50590 0 0 1 0 0 Ribosome 0.500231646062913 0.500231643921026 0.8826284 4.28377311401107e-09 hm5C_site_45942 DeepMRMD:0.8826284;iRNA_m5C:4.28377311401107e-09 45943 chr1 6680096 6680096 1 + G T UCEC 6680093 + 6680073 6680113 41 AAGAAGAAGAAGAGGAAGCGCAGGGACAGTGATGCGCCTGG AAGAAGAAGAAGAGGAAGCGCAGTGACAGTGATGCGCCTGG < 41bp 0.838511446797746 0.479438124569381 0.8608685 0.43389452 prediction 0.677022893595493 Functional Loss - PHF13 ENSG00000116273 CDS Human protein_coding chr1:6680093 chr1:6680096 nonsynonymous SNV 0.926 2 24 hm5C_associated_SNPs_50591 0 0 1 0 0 cytosol 0.500231643921101 0.500231788562472 0.721737 0 hm5C_site_45943 DeepMRMD:0.721737;iRNA_m5C:0 45944 chr11 59224554 59224554 1 + G T LUAD 59224551 + 59224531 59224571 41 CTGTGTATGTAGCAACAGTCCTGGGAAATGCACTCATTGTG CTGTGTATGTAGCAACAGTCCTGTGAAATGCACTCATTGTG < 41bp 0.838492498797889 0.494439395129621 0.3482467 0.16655073 prediction 0.676984997595779 Functional Loss - OR4D6 ENSG00000166884 CDS Human protein_coding chr11:59224551 chr11:59224554 stopgain 0.981 1 24 hm5C_associated_SNPs_50592 0 0 0 0 0 unknown 0.500231495636719 0.500231738816571 0 0 hm5C_site_45944 DeepMRMD:0;iRNA_m5C:0 45945 chr3 184294690 184294690 1 + A C STAD 184294686 + 184294666 184294706 41 TGAATGAAACCTCACTGATCCTCGAGTGGAGTGAGCCCCGG TGAATGAAACCTCACTGATCCTCGCGTGGAGTGAGCCCCGG < 41bp 0.883529406057981 0.545039791007789 0.82952976 0.33670235 prediction 0.676979230100383 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184294686 chr3:184294690 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_50593 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.65905952 4.44089209850063e-16 hm5C_site_45945 DeepMRMD:0.65905952;iRNA_m5C:4.44089209850063e-16 45946 chr17 74077643 74077643 1 + G T STAD 74077640 + 74077620 74077660 41 TTCCAGCTGAGGCTGAAGAACACGGCGCTCAAGTCCATCAT TTCCAGCTGAGGCTGAAGAACACTGCGCTCAAGTCCATCAT < 41bp 0.838484983261073 0.488233248987526 0.38166055 0.11354655 prediction 0.676969966522146 Functional Loss - ZACN ENSG00000186919 CDS Human protein_coding chr17:74077640 chr17:74077643 synonymous SNV . 0 24 hm5C_associated_SNPs_50594 0 0 0 0 1 chromatin 0.500231643921092 0.500231643861144 0 1.19897425321369e-10 hm5C_site_45946 DeepMRMD:0;iRNA_m5C:1.19897425321369e-10 45947 chr19 55493959 55493959 1 + G T STAD 55493956 + 55493936 55493976 41 TGATGAGCTGGGAGCCGCACCTGGGGCGCTGATCGAGGACA TGATGAGCTGGGAGCCGCACCTGTGGCGCTGATCGAGGACA < 41bp 0.838453253191152 0.467572879944086 0.88745964 0.268973 prediction 0.676906506382304 Functional Loss - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55493956 chr19:55493959 nonsynonymous SNV 0.025 3 24 hm5C_associated_SNPs_50595 0 0 0 0 0 Cytosol 0.500231644130508 0.500229793452537 0.77491928 3.7013559415211e-06 hm5C_site_45947 DeepMRMD:0.77491928;iRNA_m5C:3.7013559415211e-06 45948 chr11 59211254 59211254 1 + G T LUAD 59211251 + 59211231 59211271 41 TCAGTCAAGTGGTGAATTTCCTCGTGGTGGTCACTGTCGGA TCAGTCAAGTGGTGAATTTCCTCTTGGTGGTCACTGTCGGA < 41bp 0.845297429245822 0.506847999122288 0.34562802 0.15111211 prediction 0.676898860247067 Functional Loss - OR5A1 ENSG00000172320 CDS Human protein_coding chr11:59211251 chr11:59211254 nonsynonymous SNV 0.489 0 24 hm5C_associated_SNPs_50596 0 0 0 0 0 unknown 0.500231642255579 0.500231643927233 0 0 hm5C_site_45948 DeepMRMD:0;iRNA_m5C:0 45949 chr9 131750444 131750444 1 + G T UCEC 131750441 + 131750421 131750461 41 CTTCTAATGTGGTGTCCCCCCTGGAACAGGCTCTCTCACAA CTTCTAATGTGGTGTCCCCCCTGTAACAGGCTCTCTCACAA < 41bp 0.841966610851081 0.503546503421148 0.2665592 0.04722914 prediction 0.676840214859865 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131750441 chr9:131750444 stopgain 1.000 1 24 hm5C_associated_SNPs_50597 0 0 1 0 1 Nucleus 0.500231587621253 0.500231643921342 0 0 hm5C_site_45949 DeepMRMD:0;iRNA_m5C:0 45950 chr2 26678082 26678082 1 + A C rs115095929 26678078 + 26678058 26678098 41 ACACAGAGCTGCAGGCGCTACTGCAGCAGTATCTGAACTCC ACACAGAGCTGCAGGCGCTACTGCCGCAGTATCTGAACTCC < 41bp 0.886626495076217 0.548240448041464 0.4564768 0.2703565 prediction 0.676772094069507 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26678078 chr2:26678082 nonsynonymous SNV 0.215 3 25 hm5C_associated_SNPs_50598 1 0 0 0 2 exosome 0.500231420952564 0.500231643921093 0 0 hm5C_site_45950 DeepMRMD:0;iRNA_m5C:0 Primary ciliary dyskinesia Primary ciliary dyskinesia 45951 chr11 60070084 60070084 1 + G T LUAD 60070081 + 60070061 60070101 41 CAGCTCTGTACTGGCTGCATCAGGGATCTTAATCAACACAT CAGCTCTGTACTGGCTGCATCAGTGATCTTAATCAACACAT < 41bp 0.838359812583503 0.491053078534263 0.91666615 0.037118435 prediction 0.676719625167005 Functional Loss - MS4A4A ENSG00000110079 CDS Human protein_coding chr11:60070081 chr11:60070084 nonsynonymous SNV 0.007 3 24 hm5C_associated_SNPs_50599 0 0 0 0 1 Endoplasmic reticulum 0.500237461571555 0.501084430126776 0.8333323 0 hm5C_site_45951 DeepMRMD:0.8333323;iRNA_m5C:0 45952 chr11 71907060 71907060 1 + G T LUAD 71907057 + 71907037 71907077 41 ACAAGGTCAGCAACTACAGCCGAGGGAGTGGCCGCTGCATC ACAAGGTCAGCAACTACAGCCGATGGAGTGGCCGCTGCATC < 41bp 0.856357294845762 0.518028153763091 0.8280089 0.13567033 prediction 0.676658282165343 Functional Loss - FOLR1 ENSG00000110195 CDS Human protein_coding chr11:71907057 chr11:71907060 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_50600 0 0 0 0 0 Endoplasmic reticulum 0.500231643921201 0.500230841792704 0.6560178 1.60425699369249e-06 hm5C_site_45952 DeepMRMD:0.6560178;iRNA_m5C:1.60425699369249e-06 45953 chr1 12819346 12819346 1 + G T LUAD 12819343 + 12819323 12819363 41 CAACCGGCATGGTTACAACCCGGGGCTGCCTCCACTCCGCA CAACCGGCATGGTTACAACCCGGTGCTGCCTCCACTCCGCA < 41bp 0.870719630168412 0.532397375991671 0.9409662 0.86679184 prediction 0.67664450835348 Functional Loss - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12819343 chr1:12819346 nonsynonymous SNV 0.031 0 24 hm5C_associated_SNPs_50601 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.14834872 0 hm5C_site_45953 DeepMRMD:0.14834872;iRNA_m5C:0 45954 chr1 248059204 248059204 1 + G T LUAD 248059201 + 248059181 248059221 41 CCATCCAGCTCTTCCTGTTCCTGGGTCTGGGTGGTGTGGAG CCATCCAGCTCTTCCTGTTCCTGTGTCTGGGTGGTGTGGAG < 41bp 0.862973289762041 0.52465549646399 0.4240089 0.14891571 prediction 0.676635586596102 Functional Loss - OR2W3 ENSG00000238243 CDS Human protein_coding chr1:248059201 chr1:248059204 nonsynonymous SNV 0.914 1 24 hm5C_associated_SNPs_50602 0 0 1 0 0 exosome 0.500231643736358 0.500231643842796 0 0 hm5C_site_45954 DeepMRMD:0;iRNA_m5C:0 45955 chr1 45243363 45243363 1 + G T UCEC 45243360 + 45243340 45243380 41 AGCTGGTTCGTACCAAGACCCTGGTGAAGAATTGCATCGTG AGCTGGTTCGTACCAAGACCCTGTTGAAGAATTGCATCGTG < 41bp 0.838291553675017 0.491230626313663 0.055200428 0.01417771 prediction 0.676583107350034 Functional Loss - RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243360 chr1:45243363 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_50603 0 0 1 0 2 Cytosol 0.500231644229148 0.500231643932785 0 5.92726312476088e-10 hm5C_site_45955 DeepMRMD:0;iRNA_m5C:5.92726312476088e-10 45956 chr1 162336912 162336912 1 + G T KIRC 162336909 + 162336889 162336929 41 CTGCCCGTGCTCTGTGACCCCACGACCCCTAAGCCAGAGGA CTGCCCGTGCTCTGTGACCCCACTACCCCTAAGCCAGAGGA < 41bp 0.838273879225577 0.49769267779846 0.89647794 0.4658675 prediction 0.676547758451153 Functional Loss - NOS1AP ENSG00000198929;ENSG00000254706 CDS Human other chr1:162336909 chr1:162336912 synonymous SNV . 0 24 hm5C_associated_SNPs_50604 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0.79295588 0 hm5C_site_45956 DeepMRMD:0.79295588;iRNA_m5C:0 45957 chr7 53103925 53103925 1 + G T HNSC 53103922 + 53103902 53103942 41 GGGGCGCTCAGCCAGTGCCCCAAGGGAAGCGCTAGGTTCGA GGGGCGCTCAGCCAGTGCCCCAATGGAAGCGCTAGGTTCGA < 41bp 0.838266727333251 0.483223913192317 0.7070428 0.26773646 prediction 0.676533454666503 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103922 chr7:53103925 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_50605 0 0 0 0 0 unknown 0.500231643942954 0.500231747370516 0.4140856 0 hm5C_site_45957 DeepMRMD:0.4140856;iRNA_m5C:0 45958 chrX 151092896 151092896 1 + G T THYM 151092893 + 151092873 151092913 41 TGCTCACCCAAGATTGGGTGCAGGAAAACTACCTGGAGTAC TGCTCACCCAAGATTGGGTGCAGTAAAACTACCTGGAGTAC < 41bp 0.857419699041783 0.519164202739772 0.8788409 0.355731 prediction 0.676510992604021 Functional Loss - MAGEA4 ENSG00000147381 CDS Human protein_coding chrX:151092893 chrX:151092896 stopgain 0.270 1 24 hm5C_associated_SNPs_50606 0 0 0 0 0 unknown 0.500232879291682 0.500231644608554 0.7576818 2.46936625747374e-06 hm5C_site_45958 DeepMRMD:0.7576818;iRNA_m5C:2.46936625747374e-06 45959 chr20 31601730 31601730 1 + G T LUAD 31601727 + 31601707 31601747 41 ATCTCTGCCTGCTCTTTATTCTCGGGCCACGCCAACGAGTT ATCTCTGCCTGCTCTTTATTCTCTGGCCACGCCAACGAGTT < 41bp 0.838221232277281 0.476316322741337 0.34082007 0.20201957 prediction 0.676442464554563 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31601727 chr20:31601730 synonymous SNV . 0 24 hm5C_associated_SNPs_50607 0 0 0 0 1 cytosol 0.500231643921818 0.500231648610769 0 0 hm5C_site_45959 DeepMRMD:0;iRNA_m5C:0 45960 chr11 45949746 45949746 1 + A C rs11038714 45949742 + 45949722 45949762 41 GCACAGGTACCACGAGTGGCCCCGAGGCCACGCACCCACAG GCACAGGTACCACGAGTGGCCCCGCGGCCACGCACCCACAG < 41bp 0.85427157181369 0.516112469245362 0.088805765 0.13803336 prediction 0.676318205136657 Functional Loss - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949742 chr11:45949746 synonymous SNV . 0 25 hm5C_associated_SNPs_50608 0 0 1 0 1 chromatin 0.500232690656721 0.500503266740709 0 0 hm5C_site_45960 DeepMRMD:0;iRNA_m5C:0 45961 chr19 10572341 10572341 1 + G T UCEC 10572338 + 10572318 10572358 41 CGCCAGCGGCAGAGCCTACGCAAGATGGTCATCGACATGGT CGCCAGCGGCAGAGCCTACGCAATATGGTCATCGACATGGT < 41bp 0.838113210940378 0.479615959722914 0.28113675 0.072452456 prediction 0.676226421880756 Functional Loss - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10572338 chr19:10572341 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50609 0 0 0 0 1 chromatin 0.500231643758788 0.500231643921088 0 0 hm5C_site_45961 DeepMRMD:0;iRNA_m5C:0 45962 chr7 154862888 154862888 1 + C A LUAD 154862891 - 154862871 154862911 41 TCGTGCACCAGGCTCAGCGGCATGACCAGCGCGGCCACCAG TCGTGCACCAGGCTCAGCGGCATTACCAGCGCGGCCACCAG < 41bp 0.846945188051254 0.508837410451948 0.34807253 0.16369969 prediction 0.676215555198612 Functional Loss - HTR5A ENSG00000157219;ENSG00000220575 CDS Human other chr7:154862891 chr7:154862888 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50610 0 0 0 0 0 exosome 0.500231069300981 0.500231643920902 0 0 hm5C_site_45962 DeepMRMD:0;iRNA_m5C:0 45963 chr12 56515472 56515472 1 + G T BLCA 56515469 + 56515449 56515489 41 CCCTGGCTCAAACAATTGCCCAGGGAATGGCACCTCCACCT CCCTGGCTCAAACAATTGCCCAGTGAATGGCACCTCCACCT < 41bp 0.838096413578921 0.478361502254111 0.9367209 0.7820034 prediction 0.676192827157842 Functional Loss - ZC3H10 ENSG00000135482 CDS Human protein_coding chr12:56515469 chr12:56515472 stopgain 1.000 1 24 hm5C_associated_SNPs_50611 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921066 0.309435 5.32907051820075e-14 hm5C_site_45963 DeepMRMD:0.309435;iRNA_m5C:5.32907051820075e-14 45964 chr15 41767772 41767772 1 + G T GBM 41767769 + 41767749 41767789 41 GTTTAGAGTTTGTCTCAAACCAAGAATTCACCGAAAGTGAG GTTTAGAGTTTGTCTCAAACCAATAATTCACCGAAAGTGAG < 41bp 0.840446678090504 0.502360946522507 0.14768961 0.11476654 prediction 0.676171463135994 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41767769 chr15:41767772 stopgain 1.000 1 24 hm5C_associated_SNPs_50612 0 0 1 0 2 Cytosol 0.500231646412364 0.500231636882869 0 1.90589903859006e-08 hm5C_site_45964 DeepMRMD:0;iRNA_m5C:1.90589903859006e-08 45965 chr1 1961073 1961073 1 + G T UCEC 1961070 + 1961050 1961090 41 GGGCATCAGCCATCAAGGCACTGGACGTCTACTTCTGGATC GGGCATCAGCCATCAAGGCACTGTACGTCTACTTCTGGATC < 41bp 0.850950791552731 0.512865830105484 0.382397 0.20968854 prediction 0.676169922894492 Functional Loss - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961070 chr1:1961073 nonsynonymous SNV 0.957 5 24 hm5C_associated_SNPs_50613 0 0 0 0 1 Cytosol 0.500231643914079 0.500233137338334 0 0 hm5C_site_45965 DeepMRMD:0;iRNA_m5C:0 45966 chr12 49158699 49158699 1 + G T rs556353603 49158696 + 49158676 49158716 41 ACTTCAGCTTCTGGTGGTCCCATGATCCAGGAGTGCGTCCA ACTTCAGCTTCTGGTGGTCCCATTATCCAGGAGTGCGTCCA < 41bp 0.850409463684791 0.512331947566482 0.08054909 0.024982274 prediction 0.676155032236618 Functional Loss - TEX49 ENSG00000257987 CDS Human protein_coding chr12:49158696 chr12:49158699 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50614 0 0 0 0 2 unknown 0.500231643921042 0.500231643914391 0 1.33029143256636e-11 hm5C_site_45966 DeepMRMD:0;iRNA_m5C:1.33029143256636e-11 45967 chr14 86087908 86087908 1 + A C COAD 86087904 + 86087884 86087924 41 CCAGCCATGGGGCTTTTTTCCTGAAGTCTTGGCTTATCATT CCAGCCATGGGGCTTTTTTCCTGACGTCTTGGCTTATCATT < 41bp 0.838054098958369 0.481757298311734 0.26272613 0.3140328 prediction 0.676108197916738 Functional Loss - FLRT2 ENSG00000185070 CDS Human protein_coding chr14:86087904 chr14:86087908 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_50615 0 0 0 0 0 Ribosome 0.500231643923 0.500231657980292 0 0 hm5C_site_45967 DeepMRMD:0;iRNA_m5C:0 45968 chr2 143643031 143643031 1 + A C SKCM 143643027 + 143643007 143643047 41 CAACGGATGAGAGGGTGGCTCTCCACCTAGATGAGGAAGAT CAACGGATGAGAGGGTGGCTCTCCCCCTAGATGAGGAAGAT < 41bp 0.838047395544882 0.447080610651735 0.89954984 0.13084579 prediction 0.676094791089763 Functional Loss - KYNU ENSG00000115919 CDS Human protein_coding chr2:143643027 chr2:143643031 nonsynonymous SNV 0.756 0 25 hm5C_associated_SNPs_50616 0 0 1 0 1 Nucleus 0.500231645963448 0.500230365421434 0.79909968 2.56108402840738e-06 hm5C_site_45968 DeepMRMD:0.79909968;iRNA_m5C:2.56108402840738e-06 45969 chr5 140605012 140605012 1 + G T PAAD 140605009 + 140604989 140605029 41 CACAGGCTGGTGGTGCTGGTCAAGGACAATGGCGAGCCTCC CACAGGCTGGTGGTGCTGGTCAATGACAATGGCGAGCCTCC < 41bp 0.851628535079798 0.513596320671022 0.54190624 0.16711104 prediction 0.676064428817552 Functional Loss - PCDHB14 ENSG00000120327 CDS Human protein_coding chr5:140605009 chr5:140605012 nonsynonymous SNV 0.938 2 24 hm5C_associated_SNPs_50617 0 0 0 0 0 exosome 0.50023164392294 0.500231643917151 0.08381248 1.15780718346059e-11 hm5C_site_45969 DeepMRMD:0.08381248;iRNA_m5C:1.15780718346059e-11 45970 chr17 18138814 18138814 1 + G T rs186995213 18138811 + 18138791 18138831 41 CCATCACTGGGGGCCGAAACCTGGCCCAGGAGCCGTCACAG CCATCACTGGGGGCCGAAACCTGTCCCAGGAGCCGTCACAG < 41bp 0.865770726425 0.52776399793091 0.913479 0.8408563 prediction 0.676013456988179 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18138811 chr17:18138814 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_50618 0 0 1 0 2 Cytosol 0.500231643913063 0.500231643921113 0.1452454 0 hm5C_site_45970 DeepMRMD:0.1452454;iRNA_m5C:0 45971 chr11 57428335 57428335 1 + G T UCEC 57428332 + 57428312 57428352 41 ATTAACACCTGTGGCTGGGTCAAGGGCTCTGGTTACCAGGC ATTAACACCTGTGGCTGGGTCAATGGCTCTGGTTACCAGGC < 41bp 0.857517195759128 0.519551835415058 0.5292797 0.12740517 prediction 0.67593072068814 Functional Loss - CLP1 ENSG00000172409 CDS Human protein_coding chr11:57428332 chr11:57428335 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50619 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643920066 0.0585594 2.05258032792699e-12 hm5C_site_45971 DeepMRMD:0.0585594;iRNA_m5C:2.05258032792699e-12 45972 chr1 9613740 9613740 1 + G T COAD 9613737 + 9613717 9613757 41 TCCACTAGAAGTCATTAAGACACGGTTGCAGTCTTCAAGAT TCCACTAGAAGTCATTAAGACACTGTTGCAGTCTTCAAGAT < 41bp 0.845552834942005 0.507598358999532 0.21201879 0.085814774 prediction 0.675908951884945 Functional Loss - SLC25A33 ENSG00000171612 CDS Human protein_coding chr1:9613737 chr1:9613740 nonsynonymous SNV 0.753 5 24 hm5C_associated_SNPs_50620 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921059 0 6.63913368725844e-14 hm5C_site_45972 DeepMRMD:0;iRNA_m5C:6.63913368725844e-14 45973 chr9 133951327 133951327 1 + G T UCEC 133951324 + 133951304 133951344 41 TGCTGGAGGGAAGGGTGGCCCTAGAGACCCAGCGGGACCTG TGCTGGAGGGAAGGGTGGCCCTATAGACCCAGCGGGACCTG < 41bp 0.849294865246628 0.511353252215834 0.49194592 0.8168671 prediction 0.675883226061587 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133951324 chr9:133951327 stopgain 0.023 0 24 hm5C_associated_SNPs_50621 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_45973 DeepMRMD:0;iRNA_m5C:0 45974 chr10 102676799 102676799 1 + G T LUSC 102676796 + 102676776 102676816 41 AGCTCCAGAAGCCTTAGCAGCAGGAGCAGCCTGTCCAGGCA AGCTCCAGAAGCCTTAGCAGCAGTAGCAGCCTGTCCAGGCA < 41bp 0.855023415213824 0.517105826392779 0.8438462 0.33685398 prediction 0.675835177642091 Functional Loss - SLF2 ENSG00000119906 CDS Human protein_coding chr10:102676796 chr10:102676799 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_50622 0 0 1 0 0 Nucleus 0.500231569349229 0.500231643930977 0.6876924 0 hm5C_site_45974 DeepMRMD:0.6876924;iRNA_m5C:0 45975 chr9 125273201 125273201 1 + G T CESC 125273198 + 125273178 125273218 41 GCATGTACCTGACCACGGTGCTGGGGAACCTGCTCATCATG GCATGTACCTGACCACGGTGCTGTGGAACCTGCTCATCATG < 41bp 0.860767815672297 0.522896628303099 0.8856472 0.30625904 prediction 0.675742374738396 Functional Loss - OR1J2 ENSG00000197233 CDS Human protein_coding chr9:125273198 chr9:125273201 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_50623 0 0 0 0 0 exosome 0.50023164759933 0.500231959089823 0.7712944 0 hm5C_site_45975 DeepMRMD:0.7712944;iRNA_m5C:0 45976 chr8 55533682 55533682 1 + G T HNSC 55533679 + 55533659 55533699 41 GACCCCCAATTCGGCGGGGTCAGGGTGGTGGTCAACCCTCG GACCCCCAATTCGGCGGGGTCAGTGTGGTGGTCAACCCTCG < 41bp 0.8562510751904 0.51838408268638 0.9113788 0.43682012 prediction 0.675733985008039 Functional Loss - RP1 ENSG00000104237 CDS Human protein_coding chr8:55533679 chr8:55533682 nonsynonymous SNV 0.518 2 24 hm5C_associated_SNPs_50624 0 0 0 0 0 exosome 0.500231643910713 0.500231643833549 0.8227576 1.54327883805649e-10 hm5C_site_45976 DeepMRMD:0.8227576;iRNA_m5C:1.54327883805649e-10 45977 chr8 66989019 66989019 1 + A C HNSC 66989015 + 66988995 66989035 41 ATTTCAAAGAGAAGCATATACGACAAGTACGGATCGCTGGG ATTTCAAAGAGAAGCATATACGACCAGTACGGATCGCTGGG < 41bp 0.879040722902533 0.541189946880269 0.21893823 0.23860833 prediction 0.675701552044528 Functional Loss - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66989015 chr8:66989019 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_50625 0 0 0 1 1 exosome 0.500231644672124 0.500231634619649 0 2.01049510373252e-08 hm5C_site_45977 DeepMRMD:0;iRNA_m5C:2.01049510373252e-08 45978 chr17 9497613 9497613 1 + G T GBM 9497610 + 9497590 9497630 41 ATGTGATCTTCTCCAGGTGCCGGGATGAGATGTTTATGACT ATGTGATCTTCTCCAGGTGCCGGTATGAGATGTTTATGACT < 41bp 0.837838847820492 0.485918728923744 0.877869 0.19364446 prediction 0.675677695640985 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9497610 chr17:9497613 nonsynonymous SNV 0.700 4 24 hm5C_associated_SNPs_50626 0 0 0 0 1 nucleus 0.500231643921661 0.500231643920818 0.755738 1.68687286361546e-12 hm5C_site_45978 DeepMRMD:0.755738;iRNA_m5C:1.68687286361546e-12 45979 chr2 131520291 131520291 1 + G T LUSC 131520288 + 131520268 131520308 41 CGGGGCTGGACGGCCTGTGCCAGGACCTGTTGGACAGCGAG CGGGGCTGGACGGCCTGTGCCAGTACCTGTTGGACAGCGAG < 41bp 0.837809997498194 0.472537113928604 0.77825904 0.26090193 prediction 0.675619994996388 Functional Loss - AMER3 ENSG00000178171 CDS Human protein_coding chr2:131520288 chr2:131520291 nonsynonymous SNV 0.969 3 24 hm5C_associated_SNPs_50627 0 0 0 0 0 Nucleus 0.500231643920992 0.500231643921095 0.55651808 0 hm5C_site_45979 DeepMRMD:0.55651808;iRNA_m5C:0 45980 chr16 30594682 30594682 1 + C A LUSC 30594685 - 30594665 30594705 41 GTGGCGCATGAAGTGGCTGTCAAGGAGTGGTGGCCCAGCGT GTGGCGCATGAAGTGGCTGTCAATGAGTGGTGGCCCAGCGT < 41bp 0.837793587910699 0.476339305842701 0.9046137 0.24598062 prediction 0.675587175821399 Functional Loss - ZNF785 ENSG00000197162 CDS Human protein_coding chr16:30594685 chr16:30594682 nonsynonymous SNV 0.463 0 24 hm5C_associated_SNPs_50628 0 0 1 0 1 Nucleus 0.500231639817683 0.500231643910484 0.8092274 0 hm5C_site_45980 DeepMRMD:0.8092274;iRNA_m5C:0 45981 chr7 2646824 2646824 1 + G T UCEC 2646821 + 2646801 2646841 41 AGATCGGCTTCAGCCACACACGGGGACGCCTCCTCCCCACC AGATCGGCTTCAGCCACACACGGTGACGCCTCCTCCCCACC < 41bp 0.837788868335773 0.471601953310265 0.95675266 0.57339644 prediction 0.675577736671546 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2646821 chr7:2646824 synonymous SNV . 0 24 hm5C_associated_SNPs_50629 0 0 0 0 2 chromatin 0.500231643853311 0.500231682546456 0.76671244 0 hm5C_site_45981 DeepMRMD:0.76671244;iRNA_m5C:0 45982 chr1 2938798 2938798 1 + A C SKCM 2938794 + 2938774 2938814 41 TGCCCCACGCAGTCACCAAGCTCCACGTGGCGGGCAGGGAC TGCCCCACGCAGTCACCAAGCTCCCCGTGGCGGGCAGGGAC < 41bp 0.877349176297168 0.539570008332234 0.94437957 0.36116308 prediction 0.675558335929868 Functional Loss - ACTRT2 ENSG00000169717 CDS Human protein_coding chr1:2938794 chr1:2938798 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_50630 0 0 0 0 0 unknown 0.500231642419353 0.500231643920682 0.88875914 0 hm5C_site_45982 DeepMRMD:0.88875914;iRNA_m5C:0 45983 chr20 62839660 62839660 1 + G T ESCA 62839657 + 62839637 62839677 41 TCACTGACGAGTCGGAGATGCAGGACATGATGACCCGGGGA TCACTGACGAGTCGGAGATGCAGTACATGATGACCCGGGGA < 41bp 0.837769220470658 0.477955386580884 0.7505498 0.3497057 prediction 0.675538440941315 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62839657 chr20:62839660 nonsynonymous SNV 0.736 4 24 hm5C_associated_SNPs_50631 0 0 0 0 0 exosome 0.500233708211234 0.500231076314366 0.5010996 5.2637937357769e-06 hm5C_site_45983 DeepMRMD:0.5010996;iRNA_m5C:5.2637937357769e-06 45984 chr5 140432443 140432443 1 + A C HNSC 140432439 + 140432419 140432459 41 ATTCCTATATCTTGACTGTTCGAGAAAACAACAGTCCTGCG ATTCCTATATCTTGACTGTTCGAGCAAACAACAGTCCTGCG < 41bp 0.850950195653249 0.513187838617305 0.16783124 0.10726428 prediction 0.675524714071888 Functional Loss - PCDHB1 ENSG00000171815 CDS Human protein_coding chr5:140432439 chr5:140432443 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50632 0 0 0 0 0 unknown 0.500231644598011 0.50023164347187 0 2.25228147243683e-09 hm5C_site_45984 DeepMRMD:0;iRNA_m5C:2.25228147243683e-09 45985 chr19 43859874 43859874 1 + A C SKCM 43859870 + 43859850 43859890 41 GGAAGGCTGTCTGGAGGGGACAACAGAAGAGATCTGCCCCA GGAAGGCTGTCTGGAGGGGACAACCGAAGAGATCTGCCCCA < 41bp 0.837756141385039 0.468016600882546 0.5236325 0.35478023 prediction 0.675512282770079 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43859870 chr19:43859874 synonymous SNV . 0 25 hm5C_associated_SNPs_50633 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.0472649999999999 0 hm5C_site_45985 DeepMRMD:0.0472649999999999;iRNA_m5C:0 45986 chr20 44642416 44642416 1 + G T UCEC 44642413 + 44642393 44642433 41 GTCTTTGAGGAGCGGCTCTCCAAGAAGCTTTTCTTCTTCTC GTCTTTGAGGAGCGGCTCTCCAATAAGCTTTTCTTCTTCTC < 41bp 0.851992805360064 0.5142429051301 0.6549493 0.037635952 prediction 0.675499800459927 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642413 chr20:44642416 nonsynonymous SNV 0.928 1 24 hm5C_associated_SNPs_50634 0 0 0 0 1 Endoplasmic reticulum 0.500231643921199 0.500231643921096 0.3098986 2.06057393370429e-13 hm5C_site_45986 DeepMRMD:0.3098986;iRNA_m5C:2.06057393370429e-13 45987 chr17 41179292 41179292 1 + G T LAML 41179289 + 41179269 41179309 41 ACATTAGCCGACCAGAAACACTGGACAGTGTTCTCAAGAAG ACATTAGCCGACCAGAAACACTGTACAGTGTTCTCAAGAAG < 41bp 0.851794460531577 0.514045313309626 0.60595644 0.42255968 prediction 0.675498294443902 Functional Loss - RND2 ENSG00000108830 CDS Human protein_coding chr17:41179289 chr17:41179292 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50635 0 0 0 0 2 Nucleus 0.500223183078908 0.500227155284793 0.21191288 0 hm5C_site_45987 DeepMRMD:0.21191288;iRNA_m5C:0 45988 chr1 209907747 209907747 1 + G T UCEC 209907744 + 209907724 209907764 41 TCAAAGGGGGAGCTCTGCGCCAAGAAGAAGTGTATTATGAC TCAAAGGGGGAGCTCTGCGCCAATAAGAAGTGTATTATGAC < 41bp 0.83889550284666 0.501176040942392 0.11644021 0.14417592 prediction 0.675438923808536 Functional Loss - HSD11B1 ENSG00000117594 CDS Human protein_coding chr1:209907744 chr1:209907747 stopgain 0.705 0 24 hm5C_associated_SNPs_50636 0 0 0 0 1 Endoplasmic reticulum 0.500231643921071 0.500231644481543 0 0 hm5C_site_45988 DeepMRMD:0;iRNA_m5C:0 45989 chr11 65047061 65047061 1 + G T UCEC 65047058 + 65047038 65047078 41 AGCGAACTCAAGGAACATTACAAGATTGAAGCTTTCACTCC AGCGAACTCAAGGAACATTACAATATTGAAGCTTTCACTCC < 41bp 0.851545112885315 0.51383219101613 0.58872944 0.12129471 prediction 0.67542584373837 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65047058 chr11:65047061 nonsynonymous SNV 0.970 0 24 hm5C_associated_SNPs_50637 0 0 1 0 2 Endoplasmic reticulum 0.500231643921005 0.50023163740518 0.17745888 1.30316493152094e-08 hm5C_site_45989 DeepMRMD:0.17745888;iRNA_m5C:1.30316493152094e-08 45990 chr1 43162873 43162873 1 + G T rs148020196 43162870 + 43162850 43162890 41 GGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAG GGGTGCTGACAACCAGGGTGCAGTAGAACAAGGTAGACCAG < 41bp 0.846492148034944 0.508787832440877 0.94133365 0.91659796 prediction 0.675408631188134 Functional Loss - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43162870 chr1:43162873 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50638 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921096 0.04947138 0 hm5C_site_45990 DeepMRMD:0.04947138;iRNA_m5C:0 45991 chr17 6941960 6941960 1 + G T rs184174774 6941957 + 6941937 6941977 41 ATGGCTGGGAGATGCAGTCCCAGGGCCTGTGACACGACTCC ATGGCTGGGAGATGCAGTCCCAGTGCCTGTGACACGACTCC < 41bp 0.837697410517915 0.467741694311492 0.8862662 0.31220785 prediction 0.67539482103583 Functional Loss - SLC16A13 ENSG00000174327 CDS Human protein_coding chr17:6941957 chr17:6941960 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_50639 0 0 0 0 0 chromatin 0.500231643921092 0.500231643688122 0.7725324 4.6594039737613e-10 hm5C_site_45991 DeepMRMD:0.7725324;iRNA_m5C:4.6594039737613e-10 45992 chr5 140590400 140590400 1 + G T rs372246857 140590397 + 140590377 140590417 41 GCGACGCGGCCAAGCACAGGCTGGTGGTGCTGGTCAAGGAC GCGACGCGGCCAAGCACAGGCTGTTGGTGCTGGTCAAGGAC < 41bp 0.846660852879185 0.509003042928563 0.1930956 0.118739605 prediction 0.675315619901245 Functional Loss - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140590397 chr5:140590400 nonsynonymous SNV 0.049 0 24 hm5C_associated_SNPs_50640 0 0 0 0 0 exosome 0.500231643913168 0.500231643921092 0 0 hm5C_site_45992 DeepMRMD:0;iRNA_m5C:0 45993 chr16 2125865 2125865 1 + A C SKCM 2125861 + 2125841 2125881 41 GAGCAGTATGCCAGTGTGTTCGCCATCTCCCTGCCGTACAC GAGCAGTATGCCAGTGTGTTCGCCCTCTCCCTGCCGTACAC < 41bp 0.837655738749697 0.466064764069717 0.09748882 0.058916807 prediction 0.675311477499395 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2125861 chr16:2125865 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_50641 0 0 0 0 2 Endoplasmic reticulum 0.500231644595824 0.500231643921089 0 1.34946920304913e-09 hm5C_site_45993 DeepMRMD:0;iRNA_m5C:1.34946920304913e-09 45994 chr6 126080418 126080418 1 + A C rs544589306 126080414 + 126080394 126080434 41 GTGTCTCATCTCAGCACTTGCGCCACCCAGCGGGAGGCGGC GTGTCTCATCTCAGCACTTGCGCCCCCCAGCGGGAGGCGGC < 41bp 0.86909903778234 0.531541011837788 0.20309451 0.12586588 prediction 0.675116051889106 Functional Loss - HEY2 ENSG00000135547 CDS Human protein_coding chr6:126080414 chr6:126080418 nonsynonymous SNV 0.962 1 25 hm5C_associated_SNPs_50642 0 0 1 0 0 exosome 0.500231643907751 0.50023164382701 0 1.61482827110149e-10 hm5C_site_45994 DeepMRMD:0;iRNA_m5C:1.61482827110149e-10 45995 chr1 33354552 33354552 1 + A C UCEC 33354548 + 33354528 33354568 41 CCGAGATGTTGCAGGACCTGCGAGAGAACACAGAGTTCTCA CCGAGATGTTGCAGGACCTGCGAGCGAACACAGAGTTCTCA < 41bp 0.854774985357712 0.517225915921561 0.8326061 0.60489863 prediction 0.675098138872303 Functional Loss - HPCA ENSG00000121905 CDS Human protein_coding chr1:33354548 chr1:33354552 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_50643 0 0 0 0 1 Cytosol 0.500231643921138 0.5002315728978 0.45541494 1.42046676865348e-07 hm5C_site_45995 DeepMRMD:0.45541494;iRNA_m5C:1.42046676865348e-07 45996 chr3 183906570 183906570 1 + A C LUSC 183906566 + 183906546 183906586 41 CAGGGCGGAGGGCTCTGAAGCTGCAGAGCTGGCAGAAATCT CAGGGCGGAGGGCTCTGAAGCTGCCGAGCTGGCAGAAATCT < 41bp 0.837518940773226 0.44668208198132 0.385359 0.2996084 prediction 0.675037881546452 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906566 chr3:183906570 synonymous SNV . 0 25 hm5C_associated_SNPs_50644 0 0 1 0 2 Cytosol 0.500231643921748 0.500231643379624 0 1.08424869083024e-09 hm5C_site_45996 DeepMRMD:0;iRNA_m5C:1.08424869083024e-09 45997 chrX 70523162 70523162 1 + A C UCEC 70523158 + 70523138 70523178 41 CGCTAAATATATCCCAAGCCCTGGAAATGGCATTGGAACAG CGCTAAATATATCCCAAGCCCTGGCAATGGCATTGGAACAG < 41bp 0.884528536855101 0.547085073397357 0.29481822 0.17878768 prediction 0.674886926915487 Functional Loss - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70523158 chrX:70523162 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_50645 0 0 1 0 2 exosome 0.500231556125196 0.500230340421571 0 2.43140724998092e-06 hm5C_site_45997 DeepMRMD:0;iRNA_m5C:2.43140724998092e-06 45998 chr1 167096306 167096306 1 + G T LUSC 167096303 + 167096283 167096323 41 GAGAGCCAGTCTATGGCAAGCTGGGAGGCGGACAGCTCCAC GAGAGCCAGTCTATGGCAAGCTGTGAGGCGGACAGCTCCAC < 41bp 0.857475686760344 0.520040507976196 0.5878444 0.3005647 prediction 0.674870357568295 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167096303 chr1:167096306 nonsynonymous SNV 0.922 4 24 hm5C_associated_SNPs_50646 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643760859 0.1756888 3.20464987879632e-10 hm5C_site_45998 DeepMRMD:0.1756888;iRNA_m5C:3.20464987879632e-10 45999 chr19 1255487 1255487 1 + A C LUSC 1255483 + 1255463 1255503 41 GGCGTGACATCGGCACCATCCTGCAGATCCTGAACGACCTC GGCGTGACATCGGCACCATCCTGCCGATCCTGAACGACCTC < 41bp 0.881320530493888 0.543909314480967 0.2341322 0.22536063 prediction 0.674822432025841 Functional Loss - MIDN ENSG00000167470 CDS Human protein_coding chr19:1255483 chr19:1255487 nonsynonymous SNV 0.941 2 25 hm5C_associated_SNPs_50647 0 0 1 0 1 chromatin 0.500251984749417 0.500216425431543 0 7.11186357487126e-05 hm5C_site_45999 DeepMRMD:0;iRNA_m5C:7.11186357487126e-05 46000 chr4 145628384 145628384 1 + G T LUAD 145628381 + 145628361 145628401 41 TTGGTGATGGGATGATTACACTGGATGATATGGAAGAAATG TTGGTGATGGGATGATTACACTGTATGATATGGAAGAAATG < 41bp 0.838998075116293 0.501593484664582 0.20175579 0.12108752 prediction 0.674809180903423 Functional Loss - HHIP ENSG00000164161 CDS Human protein_coding chr4:145628381 chr4:145628384 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_50648 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_46000 DeepMRMD:0;iRNA_m5C:0 46001 chr17 45368487 45368487 1 + A C STAD 45368483 + 45368463 45368503 41 GGCTGGGCAGGGCCTTTGTCCTGGAGCATCTGTGGGCACCC GGCTGGGCAGGGCCTTTGTCCTGGCGCATCTGTGGGCACCC < 41bp 0.858915555348516 0.521532368049659 0.4355837 0.58788323 prediction 0.674766374597715 Functional Loss - ITGB3 ENSG00000259207 CDS Human protein_coding chr17:45368483 chr17:45368487 synonymous SNV . 0 25 hm5C_associated_SNPs_50649 0 0 0 0 0 cytosol 0.500231643927104 0.500231643921092 0 1.20228271782707e-11 hm5C_site_46001 DeepMRMD:0;iRNA_m5C:1.20228271782707e-11 46002 chr10 118314719 118314719 1 + G T LUSC 118314716 + 118314696 118314736 41 ACCCAGCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTC ACCCAGCAGAACCTTGCTTTCAGTGCACACCTGAATTAGTC < 41bp 0.850033921600633 0.512659302458089 0.92992973 0.3835035 prediction 0.674749238285087 Functional Loss - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314716 chr10:118314719 nonsynonymous SNV 0.881 4 24 hm5C_associated_SNPs_50650 0 0 0 0 1 unknown 0.500231643933586 0.500233910891497 0.85985946 0 hm5C_site_46002 DeepMRMD:0.85985946;iRNA_m5C:0 46003 chr19 19329864 19329864 1 + G T COAD 19329861 + 19329841 19329881 41 AGCCACGGCCAAGCGCAGCCCGAGATGCCCCTCGGATAAAG AGCCACGGCCAAGCGCAGCCCGATATGCCCCTCGGATAAAG < 41bp 0.837364199321547 0.472987288112302 0.35289168 0.09649199 prediction 0.674728398643095 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19329861 chr19:19329864 nonsynonymous SNV 0.047 3 24 hm5C_associated_SNPs_50651 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46003 DeepMRMD:0;iRNA_m5C:0 46004 chr1 12835108 12835108 1 + G T SKCM 12835105 + 12835085 12835125 41 CCCCACCCTGGAGGAGCTGCCCAGGGAGCTCTTTCCCCCAC CCCCACCCTGGAGGAGCTGCCCATGGAGCTCTTTCCCCCAC < 41bp 0.854350054532613 0.517003025286927 0.91595936 0.028586954 prediction 0.674694058491372 Functional Loss - PRAMEF12 ENSG00000116726 CDS Human protein_coding chr1:12835105 chr1:12835108 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50652 0 0 0 0 0 unknown 0.500231643922565 0.500231644154843 0.83191872 0 hm5C_site_46004 DeepMRMD:0.83191872;iRNA_m5C:0 46005 chr17 40818429 40818429 1 + G T PRAD 40818426 + 40818406 40818446 41 CAGCATCCAGGTGGCCCTGTCGAGGAAGTCTCCCTACCTGC CAGCATCCAGGTGGCCCTGTCGATGAAGTCTCCCTACCTGC < 41bp 0.859249154446693 0.521912773093898 0.92215705 0.2109097 prediction 0.67467276270559 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818426 chr17:40818429 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_50653 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643920989 0.8443141 2.07611705604904e-13 hm5C_site_46005 DeepMRMD:0.8443141;iRNA_m5C:2.07611705604904e-13 46006 chr9 140120100 140120100 1 + G T COAD 140120097 + 140120077 140120117 41 GACCCCCAAGAGATGGTCGTCAAGAACCCATATGCCCACAT GACCCCCAAGAGATGGTCGTCAATAACCCATATGCCCACAT < 41bp 0.837302518876753 0.497741693475852 0.7361229 0.13070133 prediction 0.674605037753507 Functional Loss - CYSRT1 ENSG00000197191 CDS Human protein_coding chr9:140120097 chr9:140120100 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_50654 0 0 0 0 1 Ribosome 0.500231643966241 0.500231643921092 0.4722458 9.02971031280231e-11 hm5C_site_46006 DeepMRMD:0.4722458;iRNA_m5C:9.02971031280231e-11 46007 chr1 20416319 20416319 1 + G T UCEC 20416316 + 20416296 20416336 41 ATGACCACTGCTATGGGCGGCTGGAGGAGAAGGGCTGCAAC ATGACCACTGCTATGGGCGGCTGTAGGAGAAGGGCTGCAAC < 41bp 0.837285415925554 0.483821099142827 0.88527274 0.8169744 prediction 0.674570831851109 Functional Loss - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20416316 chr1:20416319 stopgain 0.286 0 24 hm5C_associated_SNPs_50655 0 0 0 0 2 exosome 0.500231696417619 0.500231643920992 0.13659668 1.04993254534946e-07 hm5C_site_46007 DeepMRMD:0.13659668;iRNA_m5C:1.04993254534946e-07 46008 chr6 167591995 167591995 1 + G T LUAD 167591992 + 167591972 167592012 41 CACCCACTGGAAGGCCGACTCCCGGTGCAGAAAGACGGGAG CACCCACTGGAAGGCCGACTCCCTGTGCAGAAAGACGGGAG < 41bp 0.837216814264897 0.482571743960071 0.33067483 0.18015856 prediction 0.674433628529794 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167591992 chr6:167591995 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50656 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46008 DeepMRMD:0;iRNA_m5C:0 46009 chr11 120097580 120097580 1 + A C KIRP 120097576 + 120097556 120097596 41 AGGTTCGGGGTCTGGAGCATCTGCACATGGATGTCGCTGTC AGGTTCGGGGTCTGGAGCATCTGCCCATGGATGTCGCTGTC < 41bp 0.883626077494194 0.546449366381115 0.5345366 0.30942762 prediction 0.674353422226159 Functional Loss - OAF ENSG00000184232 CDS Human protein_coding chr11:120097576 chr11:120097580 nonsynonymous SNV 0.930 0 25 hm5C_associated_SNPs_50657 0 0 1 0 1 Endoplasmic reticulum 0.500231673451867 0.500228220083063 0.0690732000000001 6.90673760628258e-06 hm5C_site_46009 DeepMRMD:0.0690732000000001;iRNA_m5C:6.90673760628258e-06 46010 chr19 56011670 56011670 1 + G T UCEC 56011667 + 56011647 56011687 41 ATGACCTCTGAGTCCACTATCAAGAGTATCCCTCAGGCCTC ATGACCTCTGAGTCCACTATCAATAGTATCCCTCAGGCCTC < 41bp 0.837176029514175 0.485930361280642 0.9361981 0.517559 prediction 0.674352059028349 Functional Loss - SSC5D ENSG00000179954 CDS Human protein_coding chr19:56011667 chr19:56011670 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_50658 0 0 0 0 0 nucleus 0.500231643306991 0.500231643921094 0.8372782 0 hm5C_site_46010 DeepMRMD:0.8372782;iRNA_m5C:0 46011 chr5 121187881 121187881 1 + G T HNSC 121187878 + 121187858 121187898 41 GGGTGCGCCAGAACTTCCACCCCGACTCCGAGGCTGCCATC GGGTGCGCCAGAACTTCCACCCCTACTCCGAGGCTGCCATC < 41bp 0.837171728969799 0.494427080808038 0.22870311 0.09996709 prediction 0.674343457939597 Functional Loss - FTMT ENSG00000181867 CDS Human protein_coding chr5:121187878 chr5:121187881 nonsynonymous SNV 0.366 4 24 hm5C_associated_SNPs_50659 0 0 0 0 0 unknown 0.50023164392121 0.500231643921092 0 2.35367281220533e-13 hm5C_site_46011 DeepMRMD:0;iRNA_m5C:2.35367281220533e-13 46012 chr16 30389122 30389122 1 + G T READ 30389119 + 30389099 30389139 41 CCCTACGTCTTTCCCCAGATCAAGAACATGTGGGCGGCCTT CCCTACGTCTTTCCCCAGATCAATAACATGTGGGCGGCCTT < 41bp 0.859705777735796 0.522542614861726 0.63836527 0.14375561 prediction 0.674326325748139 Functional Loss - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30389119 chr16:30389122 nonsynonymous SNV 0.959 1 24 hm5C_associated_SNPs_50660 0 0 0 0 1 exosome 0.500231643920784 0.500231643831922 0.27673054 1.77722947469761e-10 hm5C_site_46012 DeepMRMD:0.27673054;iRNA_m5C:1.77722947469761e-10 46013 chr10 22678130 22678130 1 + G T LUAD 22678127 + 22678107 22678147 41 AACGCAGGAGGGGTTGCTGCCGTGATTGACTGCATTGGGTC AACGCAGGAGGGGTTGCTGCCGTTATTGACTGCATTGGGTC < 41bp 0.850505577636905 0.51335946837292 0.28290927 0.10810092 prediction 0.674292218527972 Functional Loss - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22678127 chr10:22678130 synonymous SNV . 0 24 hm5C_associated_SNPs_50661 0 0 0 0 1 exosome 0.50023164392105 0.500231643921137 0 0 hm5C_site_46013 DeepMRMD:0;iRNA_m5C:0 46014 chr16 27367221 27367221 1 + A C PRAD 27367217 + 27367197 27367237 41 GTCTGCCTGTTGTGCTATGTCAGCATCACCAAGTGAGTCCT GTCTGCCTGTTGTGCTATGTCAGCCTCACCAAGTGAGTCCT < 41bp 0.877673901191554 0.540533444049672 0.13347024 0.43495572 prediction 0.674280914283762 Functional Loss - IL4R ENSG00000077238 CDS Human protein_coding chr16:27367217 chr16:27367221 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_50662 0 0 1 0 2 Endoplasmic reticulum 0.499357904052677 0.499956759417142 0 0 hm5C_site_46014 DeepMRMD:0;iRNA_m5C:0 46015 chrX 130218915 130218915 1 + G T LUSC 130218912 + 130218892 130218932 41 GTGAAGAATTTGATCAAGGTCTGGATGTAGTGCTGGATGAC GTGAAGAATTTGATCAAGGTCTGTATGTAGTGCTGGATGAC < 41bp 0.837122468891658 0.484801200589692 0.10837093 0.04272607 prediction 0.674244937783316 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130218912 chrX:130218915 nonsynonymous SNV 0.971 4 24 hm5C_associated_SNPs_50663 0 0 0 0 1 unknown 0.50023157943421 0.500230185224897 0 2.78841862511037e-06 hm5C_site_46015 DeepMRMD:0;iRNA_m5C:2.78841862511037e-06 46016 chrX 37965974 37965974 1 + G T DLBC 37965971 + 37965951 37965991 41 GGTGGGCTGTACATTTTTGTCAAGAATTGCAGAAATCTGGC GGTGGGCTGTACATTTTTGTCAATAATTGCAGAAATCTGGC < 41bp 0.837118880564417 0.498497067155514 0.3573747 0.20878342 prediction 0.674237761128834 Functional Loss - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37965971 chrX:37965974 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50664 0 0 1 0 1 cytosol 0.500229596602892 0.500231807695335 0 0 hm5C_site_46016 DeepMRMD:0;iRNA_m5C:0 46017 chr9 131670010 131670010 1 + G T UCEC 131670007 + 131669987 131670027 41 GACCCCAAGCCGGCCTTCAGCAAGATGAATGGGTCCATGGA GACCCCAAGCCGGCCTTCAGCAATATGAATGGGTCCATGGA < 41bp 0.86181761871758 0.524707983206411 0.49278152 0.17357677 prediction 0.674219271022337 Functional Loss - LRRC8A ENSG00000136802 CDS Human protein_coding chr9:131670007 chr9:131670010 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50665 0 0 1 0 0 Endoplasmic reticulum 0.500231643936178 0.500231643921093 0 3.01714209172133e-11 hm5C_site_46017 DeepMRMD:0;iRNA_m5C:3.01714209172133e-11 46018 chr19 16860906 16860906 1 + G T READ 16860903 + 16860883 16860923 41 ACACCTTGCAGCGGGTGCTCCTGGACCCGGAGGCCTACTGG ACACCTTGCAGCGGGTGCTCCTGTACCCGGAGGCCTACTGG < 41bp 0.837100925575253 0.470955290134747 0.70715517 0.35826445 prediction 0.674201851150505 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16860903 chr19:16860906 nonsynonymous SNV 0.016 4 24 hm5C_associated_SNPs_50666 0 0 0 0 0 exosome 0.500219356713539 0.500231643921092 0.41431034 0 hm5C_site_46018 DeepMRMD:0.41431034;iRNA_m5C:0 46019 chr9 35906550 35906550 1 + A C rs199964587 35906546 + 35906526 35906566 41 ATGTGCCGAATGTGGGCCTCCACCACCACCACCACCCCCGC ATGTGCCGAATGTGGGCCTCCACCCCCACCACCACCCCCGC < 41bp 0.837097850937414 0.491481957970498 0.21019572 0.17438984 prediction 0.674195701874827 Functional Loss - HRCT1 ENSG00000196196 CDS Human protein_coding chr9:35906546 chr9:35906550 nonsynonymous SNV 0.341 3 25 hm5C_associated_SNPs_50667 0 0 0 0 0 Endoplasmic reticulum 0.50023164395441 0.500233146445353 0 0 hm5C_site_46019 DeepMRMD:0;iRNA_m5C:0 46020 chrX 135630916 135630916 1 + G T UCEC 135630913 + 135630893 135630933 41 TAGGAGGGCCTCTGTTCGGCCTGGGGAGCTGTGGCATTTCT TAGGAGGGCCTCTGTTCGGCCTGTGGAGCTGTGGCATTTCT < 41bp 0.8610413699645 0.523964990092369 0.85981953 0.25965482 prediction 0.674152759744261 Functional Loss - VGLL1 ENSG00000102243 CDS Human protein_coding chrX:135630913 chrX:135630916 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_50668 0 0 0 0 0 unknown 0.500231672678502 0.500231700542273 0.71963906 0 hm5C_site_46020 DeepMRMD:0.71963906;iRNA_m5C:0 46021 chr16 3338556 3338556 1 + G T PAAD 3338553 + 3338533 3338573 41 CTGCAAGGAGGGCCTGAGCCCCAGAGGCCCAGCTCCAGGTA CTGCAAGGAGGGCCTGAGCCCCATAGGCCCAGCTCCAGGTA < 41bp 0.856070671332233 0.518995542293269 0.837221 0.10945287 prediction 0.674150258077928 Functional Loss - ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3338553 chr16:3338556 nonsynonymous SNV 0.034 0 24 hm5C_associated_SNPs_50669 0 0 1 0 1 Cytosol 0.500231643921101 0.500231643921092 0.674442 1.68753899743024e-14 hm5C_site_46021 DeepMRMD:0.674442;iRNA_m5C:1.68753899743024e-14 46022 chr3 44598641 44598641 1 + G T OV 44598638 + 44598618 44598658 41 GTGAAGCAGGAGCCAGCAAACCAGACCTGGGGGCAGGGCAG GTGAAGCAGGAGCCAGCAAACCATACCTGGGGGCAGGGCAG < 41bp 0.845218116082994 0.508143911829494 0.45899326 0.22490555 prediction 0.674148408507 Functional Loss - ZKSCAN7 ENSG00000196345 CDS Human protein_coding chr3:44598638 chr3:44598641 nonsynonymous SNV 0.214 0 24 hm5C_associated_SNPs_50670 0 0 0 0 0 exosome 0.50023164392238 0.500231643921093 0 2.57394106029096e-12 hm5C_site_46022 DeepMRMD:0;iRNA_m5C:2.57394106029096e-12 46023 chr19 47844983 47844983 1 + G T LUSC 47844980 + 47844960 47845000 41 TCACTGCCAGCTGCCTGTCACTGGGCCCTGAGGGAGTCCCA TCACTGCCAGCTGCCTGTCACTGTGCCCTGAGGGAGTCCCA < 41bp 0.858464228245219 0.521395281011725 0.6778741 0.32474843 prediction 0.674137894466989 Functional Loss - C5AR2 ENSG00000134830 CDS Human protein_coding chr19:47844980 chr19:47844983 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_50671 0 0 0 0 0 exosome 0.500231643920844 0.500231643490836 0.3557482 8.60015836323669e-10 hm5C_site_46023 DeepMRMD:0.3557482;iRNA_m5C:8.60015836323669e-10 46024 chr1 148933317 148933317 1 + G T UCEC 148933314 + 148933294 148933334 41 ATTGTGGCTGGAGACATGAGCAAGAAAAGCCTCTGGGAGCA ATTGTGGCTGGAGACATGAGCAATAAAAGCCTCTGGGAGCA < 41bp 0.839955950156259 0.502888829899768 0.8550311 0.43084428 prediction 0.674134240512981 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148933314 chr1:148933317 . . 0 24 hm5C_associated_SNPs_50672 0 0 0 2 2 unknown 0.500231643386349 0.500231643934473 0.7100622 0 hm5C_site_46024 DeepMRMD:0.7100622;iRNA_m5C:0 46025 chr17 34171798 34171798 1 + G T UCEC 34171795 + 34171775 34171815 41 GTGGAGGCTATGGTGGAGACCGAGGAGGCTATGGAGGAGAT GTGGAGGCTATGGTGGAGACCGATGAGGCTATGGAGGAGAT < 41bp 0.856860636577577 0.519795287892721 0.88637495 0.11115858 prediction 0.674130697369711 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34171795 chr17:34171798 stopgain 0.983 0 24 hm5C_associated_SNPs_50673 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921093 0.7727499 0 hm5C_site_46025 DeepMRMD:0.7727499;iRNA_m5C:0 46026 chr4 42400112 42400112 1 + G T rs11733156 42400109 + 42400089 42400129 41 GCGCTTTGCCTTCTCCTTGGCTGGCTGCGCTGGGGCCCGGC GCGCTTTGCCTTCTCCTTGGCTGTCTGCGCTGGGGCCCGGC < 41bp 0.842920328367894 0.505871366757389 0.43072978 0.2429404 prediction 0.674097923221011 Functional Loss - SHISA3 ENSG00000178343 CDS Human protein_coding chr4:42400109 chr4:42400112 nonsynonymous SNV 0.787 1 24 hm5C_associated_SNPs_50674 0 0 1 0 0 exosome 0.500231643935714 0.500231639832948 0 8.20553291980275e-09 hm5C_site_46026 DeepMRMD:0;iRNA_m5C:8.20553291980275e-09 46027 chr11 55111088 55111088 1 + G T LUAD 55111085 + 55111065 55111105 41 ATTTGAACATCATGAATCGACTGGTTTGCATCCTTCTGTTG ATTTGAACATCATGAATCGACTGTTTTGCATCCTTCTGTTG < 41bp 0.837028522992797 0.495274390560477 0.201404 0.04057637 prediction 0.674057045985594 Functional Loss - OR4A16 ENSG00000181961 CDS Human protein_coding chr11:55111085 chr11:55111088 nonsynonymous SNV 0.033 1 24 hm5C_associated_SNPs_50675 0 0 0 0 0 unknown 0.500237491172126 0.500231674046445 0 1.16342513623025e-05 hm5C_site_46027 DeepMRMD:0;iRNA_m5C:1.16342513623025e-05 46028 chr17 6927467 6927467 1 + G T UCEC 6927464 + 6927444 6927484 41 GGTGGACGTGCTCTCTCTGCCCGGGGGTCCCGAAGCGAGAG GGTGGACGTGCTCTCTCTGCCCGTGGGTCCCGAAGCGAGAG < 41bp 0.867269342481964 0.530253240136002 0.9368011 0.16763231 prediction 0.674032204691925 Functional Loss - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927464 chr17:6927467 nonsynonymous SNV 0.677 0 24 hm5C_associated_SNPs_50676 0 0 0 0 1 Endoplasmic reticulum 0.500231643921093 0.500231643921092 0.8736022 2.22044604925031e-16 hm5C_site_46028 DeepMRMD:0.8736022;iRNA_m5C:2.22044604925031e-16 46029 chr10 126515238 126515238 1 + G T SARC 126515235 + 126515215 126515255 41 TACAGAGAGCAGGTTCTTCACAAGCAGCTCACCCGCATCCT TACAGAGAGCAGGTTCTTCACAATCAGCTCACCCGCATCCT < 41bp 0.836959594499022 0.48399218927163 0.2129499 0.10421747 prediction 0.673919188998043 Functional Loss - ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126515235 chr10:126515238 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50677 0 0 0 0 1 Nucleus 0.500231644524886 0.500231643937604 0 1.17456266934823e-09 hm5C_site_46029 DeepMRMD:0;iRNA_m5C:1.17456266934823e-09 46030 chr19 14676021 14676021 1 + G T UCEC 14676018 + 14675998 14676038 41 CTGTCCTGCCTGCCAGGGTCCAAGACGCGGAAGATCCCATA CTGTCCTGCCTGCCAGGGTCCAATACGCGGAAGATCCCATA < 41bp 0.836949183846617 0.492065990096171 0.16882002 0.1122154 prediction 0.673898367693233 Functional Loss - TECR ENSG00000099797 CDS Human protein_coding chr19:14676018 chr19:14676021 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_50678 0 0 1 0 1 Ribosome 0.500231643676533 0.500231643921093 0 0 hm5C_site_46030 DeepMRMD:0;iRNA_m5C:0 46031 chr9 91930187 91930187 1 + G T BLCA 91930184 + 91930164 91930204 41 GGTGTCCAACAGAGTCTAGGCTGGGTTCATTACATGATTCA GGTGTCCAACAGAGTCTAGGCTGTGTTCATTACATGATTCA < 41bp 0.836946747091832 0.492973951870296 0.39216775 0.1302199 prediction 0.673893494183664 Functional Loss - CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930184 chr9:91930187 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50679 0 0 1 0 1 Ribosome 0.500231643921095 0.500231643912931 0 1.63271618447425e-11 hm5C_site_46031 DeepMRMD:0;iRNA_m5C:1.63271618447425e-11 46032 chr12 49153076 49153076 1 + G T OV 49153073 + 49153053 49153093 41 CGTGCACCAGAATAGCCACACAAGATACCACGAAGCTGTCC CGTGCACCAGAATAGCCACACAATATACCACGAAGCTGTCC < 41bp 0.836945869642101 0.487048821422573 0.25684923 0.32014725 prediction 0.673891739284203 Functional Loss - TEX49 ENSG00000257987 CDS Human protein_coding chr12:49153073 chr12:49153076 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50680 0 0 0 0 2 unknown 0.500231643921093 0.500231643921251 0 0 hm5C_site_46032 DeepMRMD:0;iRNA_m5C:0 46033 chr7 143632446 143632446 1 + G T LUAD 143632443 + 143632423 143632463 41 TCACATACCTCATGACAGTGCTGGGGAACTGTCTCATTGTC TCACATACCTCATGACAGTGCTGTGGAACTGTCTCATTGTC < 41bp 0.851455299854289 0.514509506583429 0.33312273 0.05029148 prediction 0.673891586541721 Functional Loss - OR2F2 ENSG00000221910 CDS Human protein_coding chr7:143632443 chr7:143632446 nonsynonymous SNV 0.201 4 24 hm5C_associated_SNPs_50681 0 0 0 0 0 unknown 0.500229512007437 0.500291204307232 0 0 hm5C_site_46033 DeepMRMD:0;iRNA_m5C:0 46034 chr11 20398150 20398150 1 + G T UCEC 20398147 + 20398127 20398167 41 AGGGATTTGTTCGTGTTGACCGAGATTATGTGCTGAAGTCT AGGGATTTGTTCGTGTTGACCGATATTATGTGCTGAAGTCT < 41bp 0.857921856727917 0.520982787647929 0.33392423 0.21173733 prediction 0.673878138159975 Functional Loss - HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20398147 chr11:20398150 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50682 0 0 1 0 1 Endoplasmic reticulum 0.500238167925556 0.500231643779407 0 1.30482922966468e-05 hm5C_site_46034 DeepMRMD:0;iRNA_m5C:1.30482922966468e-05 46035 chr19 57795936 57795936 1 + G T UCEC 57795933 + 57795913 57795953 41 TTTCAGGAGTCTGTGACCTTCGAGGATGTGGCTGTGACATT TTTCAGGAGTCTGTGACCTTCGATGATGTGGCTGTGACATT < 41bp 0.836905116800243 0.491137819909499 0.8557915 0.09450278 prediction 0.673810233600486 Functional Loss - ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57795933 chr19:57795936 nonsynonymous SNV 0.746 0 24 hm5C_associated_SNPs_50683 0 0 1 0 1 Nucleus 0.50023164392135 0.500233040193927 0.711583 0 hm5C_site_46035 DeepMRMD:0.711583;iRNA_m5C:0 46036 chr7 31015455 31015455 1 + G T LUSC 31015452 + 31015432 31015472 41 TGAGGAAACTGGAGCCAGCTCAGGGCAGCCTCCATACCCAG TGAGGAAACTGGAGCCAGCTCAGTGCAGCCTCCATACCCAG < 41bp 0.872229150194853 0.535331351353944 0.9455959 0.32513583 prediction 0.673795597681818 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31015452 chr7:31015455 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_50684 0 0 0 0 2 unknown 0.500231643430094 0.500231643920687 0.8911918 0 hm5C_site_46036 DeepMRMD:0.8911918;iRNA_m5C:0 46037 chr17 46023331 46023331 1 + G T STAD 46023328 + 46023308 46023348 41 ATTGGGGCTGTGGTCAGCCACCAGAGTTCTGTGATCCCTGA ATTGGGGCTGTGGTCAGCCACCATAGTTCTGTGATCCCTGA < 41bp 0.836884948756093 0.493213673868725 0.42962456 0.07077083 prediction 0.673769897512185 Functional Loss - PNPO ENSG00000108439 CDS Human protein_coding chr17:46023328 chr17:46023331 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50685 0 0 1 0 1 Ribosome 0.500218889773079 0.500231621547949 0 0 hm5C_site_46037 DeepMRMD:0;iRNA_m5C:0 46038 chr10 116020987 116020987 1 + G T UCEC 116020984 + 116020964 116021004 41 AGTTCAGTTCCACTCCTCATCTGGAATTCCCCTTGGATTCA AGTTCAGTTCCACTCCTCATCTGTAATTCCCCTTGGATTCA < 41bp 0.836843162508898 0.48399883554259 0.28625447 0.074527234 prediction 0.673686325017796 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116020984 chr10:116020987 stopgain 1.000 1 24 hm5C_associated_SNPs_50686 0 0 1 0 2 exosome 0.500231656086478 0.500231643921682 0 2.43295910085095e-08 hm5C_site_46038 DeepMRMD:0;iRNA_m5C:2.43295910085095e-08 46039 chr20 43118110 43118110 1 + G T UCEC 43118107 + 43118087 43118127 41 CTGGGCCAGACGCTGCTGCCCGAGGGCCTGACCTCAGATGC CTGGGCCAGACGCTGCTGCCCGATGGCCTGACCTCAGATGC < 41bp 0.836820218831118 0.483640234829238 0.87328863 0.3714822 prediction 0.673640437662236 Functional Loss - TTPAL ENSG00000124120 CDS Human protein_coding chr20:43118107 chr20:43118110 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_50687 0 0 1 0 0 Ribosome 0.500231653998757 0.500231619556893 0.74657726 6.88837293871813e-08 hm5C_site_46039 DeepMRMD:0.74657726;iRNA_m5C:6.88837293871813e-08 46040 chrX 47107098 47107098 1 + G T LUAD 47107095 + 47107075 47107115 41 CCTGTCAATGAGAATCAGATCGAGGTGTGACTTCCATCCTA CCTGTCAATGAGAATCAGATCGATGTGTGACTTCCATCCTA < 41bp 0.857245160857155 0.520427575904736 0.92172915 0.19420046 prediction 0.673635169904838 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47107095 chrX:47107098 nonsynonymous SNV 0.970 1 24 hm5C_associated_SNPs_50688 0 0 1 0 2 cytosol 0.500231643921092 0.500231644028619 0.8434583 0 hm5C_site_46040 DeepMRMD:0.8434583;iRNA_m5C:0 46041 chr17 76498763 76498763 1 + G T COAD 76498760 + 76498740 76498780 41 ACCTCGGTCGTCCACCAGATCTGGGTGCAAGTCAGGGCCAC ACCTCGGTCGTCCACCAGATCTGTGTGCAAGTCAGGGCCAC < 41bp 0.848371177737667 0.51157319671189 0.5514383 0.23022616 prediction 0.673595962051554 Functional Loss - DNAH17 ENSG00000187775 CDS Human protein_coding chr17:76498760 chr17:76498763 synonymous SNV . 0 24 hm5C_associated_SNPs_50689 0 0 0 0 0 chromatin 0.500225232391059 0.500231643970463 0.1028766 0 hm5C_site_46041 DeepMRMD:0.1028766;iRNA_m5C:0 46042 chr19 44117487 44117487 1 + G T ESCA 44117484 + 44117464 44117504 41 GCAGAGAGATCACAGCCGATCTAGAAGTCCCAACAAGGCGA GCAGAGAGATCACAGCCGATCTATAAGTCCCAACAAGGCGA < 41bp 0.848797674432123 0.512026896858176 0.3189469 0.19693741 prediction 0.673541555147896 Functional Loss - SRRM5 ENSG00000226763 CDS Human protein_coding chr19:44117484 chr19:44117487 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_50690 0 0 0 0 0 chromatin 0.500231643971789 0.500231643920663 0 1.02251984657187e-10 hm5C_site_46042 DeepMRMD:0;iRNA_m5C:1.02251984657187e-10 46043 chr1 111860327 111860327 1 + G T rs143586120 111860324 + 111860304 111860344 41 AAATGCGTGAAGCTTTTGAGCAGGAGGCCAAGCAGATCAAC AAATGCGTGAAGCTTTTGAGCAGTAGGCCAAGCAGATCAAC < 41bp 0.84270017775324 0.505951584063577 0.8151889 0.22118658 prediction 0.673497187379325 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111860324 chr1:111860327 stopgain 0.994 0 24 hm5C_associated_SNPs_50691 0 0 0 0 1 exosome 0.500231643936695 0.500231643917614 0.6303778 3.81619180700454e-11 hm5C_site_46043 DeepMRMD:0.6303778;iRNA_m5C:3.81619180700454e-11 46044 chrX 67940801 67940801 1 + G T UCEC 67940798 + 67940778 67940818 41 CGCAAGTCTGGGGTCAAGTCCAGGATCCAGAACCTGCGTCA CGCAAGTCTGGGGTCAAGTCCAGTATCCAGAACCTGCGTCA < 41bp 0.836743151691856 0.469450166450573 0.89365983 0.7212579 prediction 0.673486303383712 Functional Loss - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67940798 chrX:67940801 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50692 0 0 0 0 1 chromatin 0.500231597246923 0.500231980490267 0.34480386 0 hm5C_site_46044 DeepMRMD:0.34480386;iRNA_m5C:0 46045 chr8 2024303 2024303 1 + G T rs529946883 2024300 + 2024280 2024320 41 GCCAACCGGGACTACGTCATCGTGACCTGGAAGCCGCCCAA GCCAACCGGGACTACGTCATCGTTACCTGGAAGCCGCCCAA < 41bp 0.836738219364195 0.48684359628232 0.42966118 0.12638125 prediction 0.673476438728389 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2024300 chr8:2024303 synonymous SNV . 0 24 hm5C_associated_SNPs_50693 0 0 0 0 2 exosome 0.500231643929405 0.500231643921092 0 1.66251457045519e-11 hm5C_site_46045 DeepMRMD:0;iRNA_m5C:1.66251457045519e-11 46046 chr20 55905029 55905029 1 + A C rs28368062 55905025 + 55905005 55905045 41 AGGAGAGGTGGCAGGGAGCCCCCAACTGGGGGAAGCCGCCT AGGAGAGGTGGCAGGGAGCCCCCACCTGGGGGAAGCCGCCT < 41bp 0.83956709606029 0.502864422595085 0.8170781 0.24507362 prediction 0.67340534693041 Functional Loss - SPO11 ENSG00000054796 CDS Human protein_coding chr20:55905025 chr20:55905029 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_50694 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.6341562 0 hm5C_site_46046 DeepMRMD:0.6341562;iRNA_m5C:0 46047 chr15 85431011 85431011 1 + G T UCEC 85431008 + 85430988 85431028 41 GGACATGGAGAACGACCCCTCGAGACGAAGAGAGTCCATCT GGACATGGAGAACGACCCCTCGATACGAAGAGAGTCCATCT < 41bp 0.85128069675203 0.514585505567937 0.88382125 0.33185542 prediction 0.673390382368185 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85431008 chr15:85431011 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_50695 0 0 1 0 2 Endoplasmic reticulum 0.500231142779077 0.500230168895335 0.7676425 1.94776748285719e-06 hm5C_site_46047 DeepMRMD:0.7676425;iRNA_m5C:1.94776748285719e-06 46048 chr1 45479716 45479716 1 + G T SARC 45479713 + 45479693 45479733 41 CTGATGCTCTGGTCCCATATCTGGTAGGACAAGTGGTGGCT CTGATGCTCTGGTCCCATATCTGTTAGGACAAGTGGTGGCT < 41bp 0.836671285169848 0.487107429355463 0.40259132 0.09000558 prediction 0.673342570339696 Functional Loss - UROD ENSG00000126088 CDS Human protein_coding chr1:45479713 chr1:45479716 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_50696 0 0 1 0 1 Ribosome 0.500231644050855 0.500231643962095 0 1.77518888477834e-10 hm5C_site_46048 DeepMRMD:0;iRNA_m5C:1.77518888477834e-10 46049 chr10 29581551 29581551 1 + G T OV 29581548 + 29581528 29581568 41 ATCTTCCAGATCAACAGCTTCGCGTGGTGCAGACGCGGAAA ATCTTCCAGATCAACAGCTTCGCTTGGTGCAGACGCGGAAA < 41bp 0.836663122354111 0.480249205972209 0.3609054 0.2749061 prediction 0.673326244708222 Functional Loss - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29581548 chr10:29581551 synonymous SNV . 0 24 hm5C_associated_SNPs_50697 0 0 0 0 1 unknown 0.50023281481448 0.500231644228476 0 2.34117200847983e-06 hm5C_site_46049 DeepMRMD:0;iRNA_m5C:2.34117200847983e-06 46050 chr18 60191545 60191545 1 + G T COAD 60191542 + 60191522 60191562 41 GCCGCGCTCCGCGGGGGCCCCGAGGACGCGGAGGTGGAGGT GCCGCGCTCCGCGGGGGCCCCGATGACGCGGAGGTGGAGGT < 41bp 0.840346789939632 0.503699896892557 0.91674 0.58128947 prediction 0.673293786094149 Functional Loss - ZCCHC2 ENSG00000141664 CDS Human protein_coding chr18:60191542 chr18:60191545 nonsynonymous SNV 0.890 0 24 hm5C_associated_SNPs_50698 0 0 1 0 1 chromatin 0.500231643921089 0.500231643921092 0.67090106 0 hm5C_site_46050 DeepMRMD:0.67090106;iRNA_m5C:0 46051 chr4 156135160 156135160 1 + G T LUSC 156135157 + 156135137 156135177 41 GAAATGAAGGTGGAACAATACGGGCCACAAACAACTCCTAG GAAATGAAGGTGGAACAATACGGTCCACAAACAACTCCTAG < 41bp 0.836596318992419 0.497775195835242 0.6850108 0.42481512 prediction 0.673192637984837 Functional Loss - NPY2R ENSG00000185149 CDS Human protein_coding chr4:156135157 chr4:156135160 synonymous SNV . 0 24 hm5C_associated_SNPs_50699 0 0 0 0 0 unknown 0.500231643921092 0.50023164392114 0.3700216 0 hm5C_site_46051 DeepMRMD:0.3700216;iRNA_m5C:0 46052 chr11 32615476 32615476 1 + G T HNSC 32615473 + 32615453 32615493 41 ACACAGAGGACAATGCTTCCCAGGCTCGAGTTGATGCCCAC ACACAGAGGACAATGCTTCCCAGTCTCGAGTTGATGCCCAC < 41bp 0.836539778485962 0.484432927958504 0.33288032 0.027731806 prediction 0.673079556971924 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32615473 chr11:32615476 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50700 0 0 1 0 2 Cytosol 0.500231585922674 0.500231642259862 0 0 hm5C_site_46052 DeepMRMD:0;iRNA_m5C:0 46053 chr15 74426764 74426764 1 + G T LUAD 74426761 + 74426741 74426781 41 GCGTCAACGCCTACTGGTTCCGCGGCCTGCGGCCGGGTACC GCGTCAACGCCTACTGGTTCCGCTGCCTGCGGCCGGGTACC < 41bp 0.836511827528418 0.482174092278442 0.77952194 0.24067977 prediction 0.673023655056835 Functional Loss - ISLR2 ENSG00000167178 CDS Human protein_coding chr15:74426761 chr15:74426764 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_50701 0 0 0 0 0 Nucleus 0.500231643782443 0.500231678407949 0.55904388 0 hm5C_site_46053 DeepMRMD:0.55904388;iRNA_m5C:0 46054 chr1 53074046 53074046 1 + G T LUSC 53074043 + 53074023 53074063 41 TCAGTGGAGGAGGTCAGACCCCAGATCACAGCGCTCGTGAG TCAGTGGAGGAGGTCAGACCCCATATCACAGCGCTCGTGAG < 41bp 0.8438977384269 0.507386043048893 0.2365447 0.16959816 prediction 0.673023390756013 Functional Loss - GPX7 ENSG00000116157 CDS Human protein_coding chr1:53074043 chr1:53074046 nonsynonymous SNV 0.523 0 24 hm5C_associated_SNPs_50702 0 0 0 0 0 exosome 0.500231642221954 0.500231631289198 0 2.18655114014865e-08 hm5C_site_46054 DeepMRMD:0;iRNA_m5C:2.18655114014865e-08 46055 chr19 36431636 36431636 1 + G T LUSC 36431633 + 36431613 36431653 41 GTGGCGTCCAGGTGACTGAGCACGGGGCCACAGCTGCTCTT GTGGCGTCCAGGTGACTGAGCACTGGGCCACAGCTGCTCTT < 41bp 0.857505316195539 0.520994905797897 0.89834106 0.38537675 prediction 0.673020820795284 Functional Loss - LRFN3 ENSG00000126243 CDS Human protein_coding chr19:36431633 chr19:36431636 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_50703 0 0 0 0 0 nucleus 0.500231643918196 0.500231867060288 0.79668212 0 hm5C_site_46055 DeepMRMD:0.79668212;iRNA_m5C:0 46056 chr20 34022199 34022199 1 + C A CESC 34022202 - 34022182 34022222 41 CGCGCCGCCCGGCAGGTCCACGAGAAGGCCCTGTTCCTGGT CGCGCCGCCCGGCAGGTCCACGATAAGGCCCTGTTCCTGGT < 41bp 0.860601398478629 0.524112731756529 0.59580314 0.042820036 prediction 0.672977333444199 Functional Loss - GDF5;GDF5OS ENSG00000125965;ENSG00000204183 CDS Human other chr20:34022202 chr20:34022199 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_50704 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.19160628 0 hm5C_site_46056 DeepMRMD:0.19160628;iRNA_m5C:0 46057 chr15 65369531 65369531 1 + G T rs2946642 65369528 + 65369508 65369548 41 CGCGACGTGTTCCACAGTGCCGCGCTCTTCATCTGCGACGG CGCGACGTGTTCCACAGTGCCGCTCTCTTCATCTGCGACGG < 41bp 0.852011979243981 0.515553388980072 0.16155699 0.07876074 prediction 0.672917180527816 Functional Loss - KBTBD13 ENSG00000234438 CDS Human protein_coding chr15:65369528 chr15:65369531 synonymous SNV . 0 24 hm5C_associated_SNPs_50705 2 0 0 0 0 unknown 0.500231536896053 0.500222987175127 0 1.70994418509096e-05 hm5C_site_46057 DeepMRMD:0;iRNA_m5C:1.70994418509096e-05 not specified not specified 46058 chr15 40861663 40861663 1 + G T BLCA 40861660 + 40861640 40861680 41 TGGCAGAAACAGTGTCTACCCAGGTTGGGACAGAGGGCGGG TGGCAGAAACAGTGTCTACCCAGTTTGGGACAGAGGGCGGG < 41bp 0.83644089131298 0.483036356278506 0.7766229 0.22165093 prediction 0.67288178262596 Functional Loss - RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40861660 chr15:40861663 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_50706 0 0 1 0 0 Cytosol 0.500231643921468 0.50023164392097 0.5532458 9.96314142298615e-13 hm5C_site_46058 DeepMRMD:0.5532458;iRNA_m5C:9.96314142298615e-13 46059 chr18 61223532 61223532 1 + G T UCEC 61223529 + 61223509 61223549 41 TGGTATGGTACGCTTGGGTGCTAGAAGTGACAGTGCACATC TGGTATGGTACGCTTGGGTGCTATAAGTGACAGTGCACATC < 41bp 0.838029700289588 0.501589569766914 0.31520742 0.21022844 prediction 0.672880261045349 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61223529 chr18:61223532 nonsynonymous SNV 0.050 5 24 hm5C_associated_SNPs_50707 0 0 0 0 1 exosome 0.500231733164682 0.500231643921133 0 1.78487097990399e-07 hm5C_site_46059 DeepMRMD:0;iRNA_m5C:1.78487097990399e-07 IgG glycosylation 46060 chr2 121107282 121107282 1 + G T LUSC 121107279 + 121107259 121107299 41 GGCTCTGCCTCCTCCTTCCACACGGCTGTGGTGAACCAGTA GGCTCTGCCTCCTCCTTCCACACTGCTGTGGTGAACCAGTA < 41bp 0.836434721083177 0.481377428607886 0.29853117 0.1788981 prediction 0.672869442166354 Functional Loss - INHBB ENSG00000163083 CDS Human protein_coding chr2:121107279 chr2:121107282 synonymous SNV . 0 24 hm5C_associated_SNPs_50708 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643920347 0 1.49169565588636e-12 hm5C_site_46060 DeepMRMD:0;iRNA_m5C:1.49169565588636e-12 46061 chr17 48185988 48185988 1 + G T UCEC 48185985 + 48185965 48186005 41 ATCTCTCCCAGATGAGTGACCGAGGTGGGGGTGTTCCCTTG ATCTCTCCCAGATGAGTGACCGATGTGGGGGTGTTCCCTTG < 41bp 0.836418893851573 0.46803765887322 0.9256644 0.6105081 prediction 0.672837787703146 Functional Loss - PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185985 chr17:48185988 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50709 0 0 1 0 2 Ribosome 0.500231643921091 0.500234618580546 0.6303126 0 hm5C_site_46061 DeepMRMD:0.6303126;iRNA_m5C:0 46062 chr5 35876393 35876393 1 + G T UCEC 35876390 + 35876370 35876410 41 CTAGACTGCAGGGAGAGTGGCAAGAATGGGCCTCATGTGTA CTAGACTGCAGGGAGAGTGGCAATAATGGGCCTCATGTGTA < 41bp 0.840416196011455 0.504013985661078 0.84825337 0.5698059 prediction 0.672804420700754 Functional Loss - IL7R ENSG00000168685 CDS Human protein_coding chr5:35876390 chr5:35876393 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_50710 0 0 0 0 0 Endoplasmic reticulum 0.50023164396032 0.500231643921756 0.55689494 7.71267494314998e-11 hm5C_site_46062 DeepMRMD:0.55689494;iRNA_m5C:7.71267494314998e-11 46063 chr1 29189318 29189318 1 + G T UCEC 29189315 + 29189295 29189335 41 TGGTACTGGGACACGGTGACCAAGATCTGCGTGTTCCTCTT TGGTACTGGGACACGGTGACCAATATCTGCGTGTTCCTCTT < 41bp 0.848372570732663 0.511982935748825 0.5502392 0.12617815 prediction 0.672779269967675 Functional Loss - OPRD1 ENSG00000116329 CDS Human protein_coding chr1:29189315 chr1:29189318 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50711 0 0 0 0 1 nucleoplasm 0.500214915357423 0.500231643871294 0.1004784 0 hm5C_site_46063 DeepMRMD:0.1004784;iRNA_m5C:0 46064 chr3 141499650 141499650 1 + G T HNSC 141499647 + 141499627 141499667 41 AAGGGTGGCAAGCCCATCACCCAGAGGGTGAGTGACTCTCC AAGGGTGGCAAGCCCATCACCCATAGGGTGAGTGACTCTCC < 41bp 0.836354836421931 0.484804240276483 0.3337038 0.18469256 prediction 0.672709672843863 Functional Loss - GRK7 ENSG00000114124 CDS Human protein_coding chr3:141499647 chr3:141499650 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_50712 0 0 0 0 0 exosome 0.500231773613164 0.50023164391874 0 2.59388847068109e-07 hm5C_site_46064 DeepMRMD:0;iRNA_m5C:2.59388847068109e-07 46065 chrX 65476001 65476001 1 + G T STAD 65475998 + 65475978 65476018 41 CTATCTGCCAAAAGGGCATCCTGGAGCCCCATGGAGGACGG CTATCTGCCAAAAGGGCATCCTGTAGCCCCATGGAGGACGG < 41bp 0.854886182354996 0.518549201093985 0.37380502 0.11067003 prediction 0.672673962522023 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65475998 chrX:65476001 stopgain 0.816 0 24 hm5C_associated_SNPs_50713 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_46065 DeepMRMD:0;iRNA_m5C:0 46066 chr1 248084853 248084853 1 + G T LUAD 248084850 + 248084830 248084870 41 GAGATCGATCACTTCTTCTGCGAGACCCCCGTGCTGGTGCG GAGATCGATCACTTCTTCTGCGATACCCCCGTGCTGGTGCG < 41bp 0.848583131132006 0.512263376102251 0.492105 0.046274304 prediction 0.672639510059509 Functional Loss - OR2T8 ENSG00000177462 CDS Human protein_coding chr1:248084850 chr1:248084853 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_50714 0 0 0 0 0 exosome 0.500243271986361 0.500231643921143 0 2.32561304369661e-05 hm5C_site_46066 DeepMRMD:0;iRNA_m5C:2.32561304369661e-05 46067 chr9 99220679 99220679 1 + G T UCEC 99220676 + 99220656 99220696 41 GGTAGGCCAGAAGCGGACTCCTAGAAGAGGGGAGCAGCAAG GGTAGGCCAGAAGCGGACTCCTATAAGAGGGGAGCAGCAAG < 41bp 0.853904159660917 0.517625511359729 0.4277261 0.8819549 prediction 0.672557296602375 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99220676 chr9:99220679 nonsynonymous SNV 0.937 2 24 hm5C_associated_SNPs_50715 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_46067 DeepMRMD:0;iRNA_m5C:0 46068 chr9 119461705 119461705 1 + G T LUSC 119461702 + 119461682 119461722 41 CTGTAGGCCCTGATGGGCAGCTGGGTCGCCAGATTAGCCAC CTGTAGGCCCTGATGGGCAGCTGTGTCGCCAGATTAGCCAC < 41bp 0.850014449846814 0.513743574871856 0.3979187 0.07487029 prediction 0.672541749949914 Functional Loss - TRIM32 ENSG00000119401 CDS Human protein_coding chr9:119461702 chr9:119461705 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_50716 0 0 0 0 0 chromatin 0.500231643921092 0.500231643976501 0 0 hm5C_site_46068 DeepMRMD:0;iRNA_m5C:0 46069 chr1 161130660 161130660 1 + G T LUAD 161130657 + 161130637 161130677 41 ACGGGGACGGACCTCAGGCCCTCGTCCCAGAGGCCCCCTTC ACGGGGACGGACCTCAGGCCCTCTTCCCAGAGGCCCCCTTC < 41bp 0.836213142059205 0.474195293808317 0.1890626 0.1113984 prediction 0.672426284118409 Functional Loss - USP21 ENSG00000143258 CDS Human protein_coding chr1:161130657 chr1:161130660 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_50717 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_46069 DeepMRMD:0;iRNA_m5C:0 46070 chr1 99771331 99771331 1 + G T LUAD 99771328 + 99771308 99771348 41 GGTCTCTGACAGACCTCAATCAAGATCCCAACCGACTTTTA GGTCTCTGACAGACCTCAATCAATATCCCAACCGACTTTTA < 41bp 0.836196133471636 0.493340068310957 0.39238724 0.06804201 prediction 0.672392266943272 Functional Loss - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99771328 chr1:99771331 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50718 0 0 0 0 1 exosome 0.500231643921092 0.500231643921093 0 0 hm5C_site_46070 DeepMRMD:0;iRNA_m5C:0 46071 chr4 69978308 69978308 1 + G T LUSC 69978305 + 69978285 69978325 41 AACACCTTCGGGTTGCAGCCCACGACCTCACCTGGTTCCAG AACACCTTCGGGTTGCAGCCCACTACCTCACCTGGTTCCAG < 41bp 0.841710507106384 0.505540545166775 0.023151934 0.010321945 prediction 0.672339923879218 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69978305 chr4:69978308 nonsynonymous SNV 0.293 3 24 hm5C_associated_SNPs_50719 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_46071 DeepMRMD:0;iRNA_m5C:0 46072 chr4 159091958 159091958 1 + G T LUAD 159091955 + 159091935 159091975 41 GGCTGCAGGAAGTCTGGGCCCCCGGCTCGCACTCCCGGACC GGCTGCAGGAAGTCTGGGCCCCCTGCTCGCACTCCCGGACC < 41bp 0.836167322502106 0.493580914193598 0.1632134 0.041303754 prediction 0.672334645004212 Functional Loss - FAM198B ENSG00000164125 CDS Human protein_coding chr4:159091955 chr4:159091958 synonymous SNV . 0 24 hm5C_associated_SNPs_50720 0 0 0 0 0 Cytosol 0.500231643921091 0.500231643921092 0 0 hm5C_site_46072 DeepMRMD:0;iRNA_m5C:0 46073 chr3 49212328 49212328 1 + A C COAD 49212324 + 49212304 49212344 41 TCTTTAGCCTGGGTGGCCTGCAGCAGCCTGGGCCCCACAAC TCTTTAGCCTGGGTGGCCTGCAGCCGCCTGGGCCCCACAAC < 41bp 0.873568787553392 0.537419876271069 0.68169016 0.36888784 prediction 0.672297822564646 Functional Loss - KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212324 chr3:49212328 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50721 0 0 1 0 1 Cytosol 0.500231643919769 0.500231643921093 0.36338032 0 hm5C_site_46073 DeepMRMD:0.36338032;iRNA_m5C:0 46074 chr19 50917049 50917049 1 + G T UCEC 50917046 + 50917026 50917066 41 ATGTGCCGATTCGGCGTGTCCTCGGTGGCTGAGGCGATGGC ATGTGCCGATTCGGCGTGTCCTCTGTGGCTGAGGCGATGGC < 41bp 0.857269992001771 0.52112533591578 0.12626705 0.03715691 prediction 0.672289312171981 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50917046 chr19:50917049 synonymous SNV . 0 24 hm5C_associated_SNPs_50722 0 0 1 0 2 Nucleus 0.50023164478708 0.500232081197798 0 0 hm5C_site_46074 DeepMRMD:0;iRNA_m5C:0 46075 chr7 130008389 130008389 1 + G T STAD 130008386 + 130008366 130008406 41 CATCCCCACGGCCCAGGAGACGTGGATGGCGCTTCGGACCA CATCCCCACGGCCCAGGAGACGTTGATGGCGCTTCGGACCA < 41bp 0.83613471984987 0.481766961914206 0.45535606 0.19508287 prediction 0.67226943969974 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130008386 chr7:130008389 stopgain 0.688 2 24 hm5C_associated_SNPs_50723 0 0 0 0 0 exosome 0.500231631409303 0.500231643732943 0 0 hm5C_site_46075 DeepMRMD:0;iRNA_m5C:0 46076 chr12 57389250 57389250 1 + G T THYM 57389247 + 57389227 57389267 41 CTGGCGCGGCTCAGGCCGGGCAGGGCTGATGAACCTCTACA CTGGCGCGGCTCAGGCCGGGCAGTGCTGATGAACCTCTACA < 41bp 0.86975135069648 0.533618517002169 0.9152952 0.3902228 prediction 0.672265667388622 Functional Loss - GPR182 ENSG00000166856 CDS Human protein_coding chr12:57389247 chr12:57389250 nonsynonymous SNV 0.444 2 24 hm5C_associated_SNPs_50724 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0.8305904 0 hm5C_site_46076 DeepMRMD:0.8305904;iRNA_m5C:0 46077 chr7 143747577 143747577 1 + G T LUSC 143747574 + 143747554 143747594 41 AAGGATTCAGATGCTCCTCTCTGGGCTTTTCTCCCTGTTAT AAGGATTCAGATGCTCCTCTCTGTGCTTTTCTCCCTGTTAT < 41bp 0.836092329069243 0.489150529874476 0.32577527 0.0136472285 prediction 0.672184658138487 Functional Loss - OR2A5 ENSG00000221836 CDS Human protein_coding chr7:143747574 chr7:143747577 nonsynonymous SNV 0.116 0 24 hm5C_associated_SNPs_50725 0 0 0 0 0 unknown 0.500231643921092 0.500231643896276 0 4.96331864496824e-11 hm5C_site_46077 DeepMRMD:0;iRNA_m5C:4.96331864496824e-11 46078 chr3 183888414 183888414 1 + G T LUAD 183888411 + 183888391 183888431 41 CTGATGATGCCCCCGCCGCCCGCGGCCATGGGGCCCCCAGG CTGATGATGCCCCCGCCGCCCGCTGCCATGGGGCCCCCAGG < 41bp 0.846105405616677 0.510037854262049 0.38967294 0.1191065 prediction 0.672135102709255 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183888411 chr3:183888414 synonymous SNV . 0 24 hm5C_associated_SNPs_50726 0 0 1 0 0 Cytosol 0.500231643912619 0.500231643661344 0 5.0254977956854e-10 hm5C_site_46078 DeepMRMD:0;iRNA_m5C:5.0254977956854e-10 46079 chr11 71260207 71260207 1 + G T UCEC 71260204 + 71260184 71260224 41 GTCCCTGTGTGCTACCAGTGCAAGATCTGAGGCTCTAGTGG GTCCCTGTGTGCTACCAGTGCAATATCTGAGGCTCTAGTGG < 41bp 0.852883493339789 0.516831360670326 0.671464 0.24144614 prediction 0.672104265338927 Functional Loss - KRTAP5-9 ENSG00000254997 CDS Human protein_coding chr11:71260204 chr11:71260207 nonsynonymous SNV 0.983 3 24 hm5C_associated_SNPs_50727 0 0 0 0 0 exosome 0.500231643921108 0.500231643921092 0.342928 3.06421554796543e-14 hm5C_site_46079 DeepMRMD:0.342928;iRNA_m5C:3.06421554796543e-14 46080 chr11 124496881 124496881 1 + A C STAD 124496877 + 124496857 124496897 41 TGCAGTACTCGAATATATGCCAGCATGAAGTGCCCAGACCA TGCAGTACTCGAATATATGCCAGCCTGAAGTGCCCAGACCA < 41bp 0.836034763426682 0.455680853957471 0.14471576 0.14370143 prediction 0.672069526853364 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124496877 chr11:124496881 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_50728 0 0 1 0 2 Ribosome 0.500231667084257 0.500285927947958 0 0 hm5C_site_46080 DeepMRMD:0;iRNA_m5C:0 46081 chr6 52269064 52269064 1 + G T UCEC 52269061 + 52269041 52269081 41 AAAGTCAAGGCCAGACTGACCAAGAAAGATTCCTGAGGCTG AAAGTCAAGGCCAGACTGACCAATAAAGATTCCTGAGGCTG < 41bp 0.851996452495952 0.515986619416113 0.8303154 0.3605364 prediction 0.672019666159679 Functional Loss - PAQR8 ENSG00000170915 CDS Human protein_coding chr6:52269061 chr6:52269064 nonsynonymous SNV 0.989 0 24 hm5C_associated_SNPs_50729 0 0 0 0 0 Ribosome 0.500231643892507 0.500231644035282 0.6606308 0 hm5C_site_46081 DeepMRMD:0.6606308;iRNA_m5C:0 46082 chr3 97806742 97806742 1 + A C rs77322229 97806738 + 97806718 97806758 41 GGGCAGAAGCAAAGCCTTCTCCACATGCGGCGCCCATCTGC GGGCAGAAGCAAAGCCTTCTCCACCTGCGGCGCCCATCTGC < 41bp 0.84540532008339 0.509407116078148 0.3269542 0.1085923 prediction 0.671996408010484 Functional Loss - OR5AC2 ENSG00000196578 CDS Human protein_coding chr3:97806738 chr3:97806742 synonymous SNV . 0 25 hm5C_associated_SNPs_50730 0 0 0 0 0 unknown 0.500231643946767 0.500231643921173 0 5.11879427733675e-11 hm5C_site_46082 DeepMRMD:0;iRNA_m5C:5.11879427733675e-11 46083 chrX 30236955 30236955 1 + G T UCEC 30236952 + 30236932 30236972 41 ACAAAATCTAAAAAAGGTGCCAAGAGCCACCAAGGTGAGAA ACAAAATCTAAAAAAGGTGCCAATAGCCACCAAGGTGAGAA < 41bp 0.838318906669627 0.502361825322811 0.15682706 0.06462374 prediction 0.67191416269363 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236952 chrX:30236955 nonsynonymous SNV 0.099 0 24 hm5C_associated_SNPs_50731 0 0 0 0 0 exosome 0.500231643929896 0.500216146773287 0 3.09943132184021e-05 hm5C_site_46083 DeepMRMD:0;iRNA_m5C:3.09943132184021e-05 46084 chrX 10180620 10180620 1 + G T UCEC 10180617 + 10180597 10180637 41 CACCATGACTGGATCATCTTCAGGAACTGGTGCAGACCCGG CACCATGACTGGATCATCTTCAGTAACTGGTGCAGACCCGG < 41bp 0.864289669795182 0.528339107000492 0.8084446 0.377258 prediction 0.67190112558938 Functional Loss - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10180617 chrX:10180620 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50732 0 0 0 0 1 Endoplasmic reticulum 0.500231604929871 0.500231638310069 0.6168892 0 hm5C_site_46084 DeepMRMD:0.6168892;iRNA_m5C:0 46085 chr9 133308930 133308930 1 + G T rs114662142 133308927 + 133308907 133308947 41 CCCGACCCCCGCAGCCCCTTCGCGCTGCGTCCGCTGCGCGC CCCGACCCCCGCAGCCCCTTCGCTCTGCGTCCGCTGCGCGC < 41bp 0.835948638494402 0.496418202631286 0.4160835 0.18245608 prediction 0.671897276988805 Functional Loss - HMCN2 ENSG00000148357 CDS Human protein_coding chr9:133308927 chr9:133308930 synonymous SNV . 0 24 hm5C_associated_SNPs_50733 0 0 0 0 0 exosome 0.500231643920952 0.500231643921092 0 0 hm5C_site_46085 DeepMRMD:0;iRNA_m5C:0 46086 chr17 4836938 4836938 1 + G T COAD 4836935 + 4836915 4836955 41 CCTCCTCCTTGCATCCAACACAAGAATCCACTAAGGAGCAG CCTCCTCCTTGCATCCAACACAATAATCCACTAAGGAGCAG < 41bp 0.858721506312711 0.522798779268478 0.4231712 0.8050539 prediction 0.671845454088466 Functional Loss - GP1BA ENSG00000185245 CDS Human protein_coding chr17:4836935 chr17:4836938 stopgain 0.000 0 24 hm5C_associated_SNPs_50734 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46086 DeepMRMD:0;iRNA_m5C:0 46087 chr7 107234462 107234462 1 + A C STAD 107234458 + 107234438 107234478 41 ACCATTGAGAAGAGCTCCACCAGCAGACCTGATGCCTATGA ACCATTGAGAAGAGCTCCACCAGCCGACCTGATGCCTATGA < 41bp 0.835907935776104 0.458893635832788 0.15058851 0.047798425 prediction 0.671815871552207 Functional Loss - BCAP29 ENSG00000075790 CDS Human protein_coding chr7:107234458 chr7:107234462 synonymous SNV . 0 25 hm5C_associated_SNPs_50735 0 0 1 0 2 Ribosome 0.50023164392105 0.500231643916621 0 8.85980178111367e-12 hm5C_site_46087 DeepMRMD:0;iRNA_m5C:8.85980178111367e-12 46088 chr3 42727434 42727434 1 + A C rs35033264 42727430 + 42727410 42727450 41 CGTGCAGGATTTGTTCGCCGCGGCACACCGCTTCCAGATCC CGTGCAGGATTTGTTCGCCGCGGCCCACCGCTTCCAGATCC < 41bp 0.856666619901673 0.520772741511246 0.23980635 0.14489436 prediction 0.671787756780854 Functional Loss - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42727430 chr3:42727434 synonymous SNV . 0 25 hm5C_associated_SNPs_50736 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_46088 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 46089 chr12 56031110 56031110 1 + G T UCEC 56031107 + 56031087 56031127 41 AGCCCACGGGCCTGCATGGCCATGGTGGGTACCTCCTGGCT AGCCCACGGGCCTGCATGGCCATTGTGGGTACCTCCTGGCT < 41bp 0.86025590470152 0.52437453935449 0.84337276 0.27909073 prediction 0.67176273069406 Functional Loss - OR10P1 ENSG00000175398 CDS Human protein_coding chr12:56031107 chr12:56031110 nonsynonymous SNV 0.043 2 24 hm5C_associated_SNPs_50737 0 0 0 0 0 exosome 0.500231643921091 0.500231643921092 0.68674552 0 hm5C_site_46089 DeepMRMD:0.68674552;iRNA_m5C:0 46090 chr1 2939246 2939246 1 + G T LUAD 2939243 + 2939223 2939263 41 AAGGACACCCCCATCAAGATCACGGCTCCCCCCGACCGGTG AAGGACACCCCCATCAAGATCACTGCTCCCCCCGACCGGTG < 41bp 0.835864881372835 0.485524553521438 0.4140072 0.112814605 prediction 0.671729762745671 Functional Loss - ACTRT2 ENSG00000169717 CDS Human protein_coding chr1:2939243 chr1:2939246 synonymous SNV . 0 24 hm5C_associated_SNPs_50738 0 0 0 0 0 unknown 0.500232912055897 0.500231643921092 0 2.53626960944331e-06 hm5C_site_46090 DeepMRMD:0;iRNA_m5C:2.53626960944331e-06 46091 chr16 1291160 1291160 1 + G T THCA 1291157 + 1291137 1291177 41 CCTGGCACCTGCCCCAGCCCCAGGCCAGGCCCTGCAGCGAG CCTGGCACCTGCCCCAGCCCCAGTCCAGGCCCTGCAGCGAG < 41bp 0.84859814512846 0.512753291182509 0.4161403 0.19890109 prediction 0.671689707891902 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291157 chr16:1291160 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_50739 0 0 0 0 0 exosome 0.500231643943583 0.500231643384943 0 1.11728004625888e-09 hm5C_site_46091 DeepMRMD:0;iRNA_m5C:1.11728004625888e-09 46092 chr5 140476411 140476411 1 + A C COAD 140476407 + 140476387 140476427 41 CTACCTGCTGCTCCCGGAGGCGGCACCGGCCCAGGCCCAGG CTACCTGCTGCTCCCGGAGGCGGCCCCGGCCCAGGCCCAGG < 41bp 0.843870100917784 0.508026828888606 0.76424444 0.7705164 prediction 0.671686544058356 Functional Loss - PCDHB2 ENSG00000112852 CDS Human protein_coding chr5:140476407 chr5:140476411 synonymous SNV . 0 25 hm5C_associated_SNPs_50740 0 0 1 0 0 exosome 0.500231640696181 0.500231643921092 0 0 hm5C_site_46092 DeepMRMD:0;iRNA_m5C:0 46093 chr2 131672768 131672768 1 + G T ACC 131672765 + 131672745 131672785 41 TTCGCTTGCAAAGGGCCTCTCAGGACACTCCTTCTGCAGGT TTCGCTTGCAAAGGGCCTCTCAGTACACTCCTTCTGCAGGT < 41bp 0.842710227235749 0.506874012973784 0.90325 0.37885818 prediction 0.671672428523929 Functional Loss - AMER3;ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131672765 chr2:131672768 nonsynonymous SNV 0.022 1 24 hm5C_associated_SNPs_50741 0 0 0 0 0 unknown 0.500231643920787 0.500231723937264 0.8065 0 hm5C_site_46093 DeepMRMD:0.8065;iRNA_m5C:0 46094 chr17 42636154 42636154 1 + G T STAD 42636151 + 42636131 42636171 41 AAGTGGGGCCACGAGGCCATCGAGGCCAACTCTCAGTACTT AAGTGGGGCCACGAGGCCATCGATGCCAACTCTCAGTACTT < 41bp 0.83581067439113 0.488600148834477 0.91968316 0.3541171 prediction 0.67162134878226 Functional Loss - FZD2 ENSG00000180340 CDS Human protein_coding chr17:42636151 chr17:42636154 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_50742 0 0 1 0 0 exosome 0.500231643921078 0.50023164392109 0.83936632 0 hm5C_site_46094 DeepMRMD:0.83936632;iRNA_m5C:0 46095 chr2 190531388 190531388 1 + G T UCEC 190531385 + 190531365 190531405 41 GTGGCAAGAAGTTCCAGCATCTGGACTTTTCAGAATTGATC GTGGCAAGAAGTTCCAGCATCTGTACTTTTCAGAATTGATC < 41bp 0.838328649083938 0.502528169682605 0.13533792 0.06539756 prediction 0.671600958802666 Functional Loss - ASNSD1 ENSG00000138381 CDS Human protein_coding chr2:190531385 chr2:190531388 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_50743 0 0 1 0 0 chromatin 0.500219624952214 0.500231644044048 0 0 hm5C_site_46095 DeepMRMD:0;iRNA_m5C:0 46096 chr14 69966956 69966956 1 + G T rs187144847 69966953 + 69966933 69966973 41 GGCCCCTCCCAGGGCCACAGCAGGGGAGGGCCCAGTGCGGG GGCCCCTCCCAGGGCCACAGCAGTGGAGGGCCCAGTGCGGG < 41bp 0.835776857973021 0.490200079432085 0.9311005 0.73040575 prediction 0.671553715946042 Functional Loss - PLEKHD1 ENSG00000175985 intronic Human protein_coding chr14:69966953 chr14:69966956 . . 0 24 hm5C_associated_SNPs_50744 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.4013895 0 hm5C_site_46096 DeepMRMD:0.4013895;iRNA_m5C:0 46097 chr4 187112682 187112682 1 + A C rs7662717 187112678 + 187112658 187112698 41 TCCCGGCGCAGCCTCCGGGCCTCCAGTGCAATCACTACGCC TCCCGGCGCAGCCTCCGGGCCTCCCGTGCAATCACTACGCC < 41bp 0.854972421121494 0.519200818833483 0.9305332 0.21890214 prediction 0.671543204576021 Functional Loss - CYP4V2 ENSG00000145476 UTR5 Human protein_coding chr4:187112678 chr4:187112682 . . 0 25 hm5C_associated_SNPs_50745 2 0 0 0 0 Nucleus 0.500231643514526 0.500231643921092 0.8610664 0 hm5C_site_46097 DeepMRMD:0.8610664;iRNA_m5C:0 Bietti crystalline corneoretinal dystrophy Bietti crystalline corneoretinal dystrophy 46098 chr3 129249822 129249822 1 + G T THCA 129249819 + 129249799 129249839 41 TTCGGGGAGAACCATGCCATCATGGGCGTTGCCTTCACCTG TTCGGGGAGAACCATGCCATCATTGGCGTTGCCTTCACCTG < 41bp 0.835763053091082 0.472710883380487 0.8911038 0.34463444 prediction 0.671526106182165 Functional Loss - RHO ENSG00000163914 CDS Human protein_coding chr3:129249819 chr3:129249822 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_50746 0 0 0 0 1 Cytosol 0.500231644087698 0.500231643945397 0.7822076 2.84602785782795e-10 hm5C_site_46098 DeepMRMD:0.7822076;iRNA_m5C:2.84602785782795e-10 46099 chr14 52188726 52188726 1 + G T LUAD 52188723 + 52188703 52188743 41 AGCAGATGAATGAAGAGTCTCTGGAAGTCAGCCCAGACATG AGCAGATGAATGAAGAGTCTCTGTAAGTCAGCCCAGACATG < 41bp 0.843729426361762 0.507967670349346 0.30785885 0.12155312 prediction 0.671523512024831 Functional Loss - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52188723 chr14:52188726 stopgain 0.922 1 24 hm5C_associated_SNPs_50747 0 0 1 0 2 nucleus 0.500231605019547 0.500235814748251 0 0 hm5C_site_46099 DeepMRMD:0;iRNA_m5C:0 46100 chr12 53646934 53646934 1 + G T UCEC 53646931 + 53646911 53646951 41 CTTGTGGATTGGCTGGGTCGCAAGAATTCTTGTGTCCTCTT CTTGTGGATTGGCTGGGTCGCAATAATTCTTGTGTCCTCTT < 41bp 0.83573730691648 0.486411059765584 0.7185968 0.30344552 prediction 0.67147461383296 Functional Loss - MFSD5 ENSG00000182544 CDS Human protein_coding chr12:53646931 chr12:53646934 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_50748 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.4371936 0 hm5C_site_46100 DeepMRMD:0.4371936;iRNA_m5C:0 46101 chr10 29776135 29776135 1 + A C UCEC 29776131 + 29776111 29776151 41 TTTGCAAACTCTCCTACCCACAGGAAGCAGCAGTGGGGAGA TTTGCAAACTCTCCTACCCACAGGCAGCAGCAGTGGGGAGA < 41bp 0.849022731620662 0.513302497947342 0.40533426 0.22389406 prediction 0.671440467346639 Functional Loss - SVIL ENSG00000197321 CDS Human protein_coding chr10:29776131 chr10:29776135 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_50749 0 0 0 0 1 Nucleus 0.500231645233539 0.50023225819747 0 0 hm5C_site_46101 DeepMRMD:0;iRNA_m5C:0 46102 chr15 101432806 101432806 1 + G T SKCM 101432803 + 101432783 101432823 41 TAGAACCCTCAGATACTTTGCAGGGTGGGCAGACAAAATCC TAGAACCCTCAGATACTTTGCAGTGTGGGCAGACAAAATCC < 41bp 0.835715727992585 0.475761913957587 0.88037694 0.25299975 prediction 0.671431455985169 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101432803 chr15:101432806 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_50750 0 0 0 0 2 Nucleus 0.500231644153651 0.500231888862614 0.76075388 0 hm5C_site_46102 DeepMRMD:0.76075388;iRNA_m5C:0 46103 chrX 50053799 50053799 1 + A C LUAD 50053795 + 50053775 50053815 41 AGCAGGAGGCCCTCTTTAAGCGACACTCAGCTTTGTGGGAG AGCAGGAGGCCCTCTTTAAGCGACCCTCAGCTTTGTGGGAG < 41bp 0.835695993569441 0.478056792053656 0.059601814 0.0558483 prediction 0.671391987138882 Functional Loss - CCNB3 ENSG00000147082 CDS Human protein_coding chrX:50053795 chrX:50053799 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_50751 0 0 0 0 0 exosome 0.500231643921095 0.500231643921095 0 0 hm5C_site_46103 DeepMRMD:0;iRNA_m5C:0 46104 chr1 210012334 210012334 1 + G T UCEC 210012331 + 210012311 210012351 41 AGCCTCCTCGAGGGTGACAGCAAGAAGAAAATCATTGTGAG AGCCTCCTCGAGGGTGACAGCAATAAGAAAATCATTGTGAG < 41bp 0.83569416726421 0.490432210103746 0.89977056 0.38906282 prediction 0.671388334528421 Functional Loss - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210012331 chr1:210012334 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50752 0 0 1 0 1 Cytosol 0.500231643921092 0.500231756785907 0.79954112 0 hm5C_site_46104 DeepMRMD:0.79954112;iRNA_m5C:0 46105 chr1 43162925 43162925 1 + A C PRAD 43162921 + 43162901 43162941 41 TATGTATCGGGGATATAGACCACGATTCCGCAGGTATGGTC TATGTATCGGGGATATAGACCACGCTTCCGCAGGTATGGTC < 41bp 0.835690880624281 0.471661338198106 0.0777643 0.10666254 prediction 0.671381761248562 Functional Loss - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43162921 chr1:43162925 synonymous SNV 1.000 0 25 hm5C_associated_SNPs_50753 0 0 0 0 1 Cytosol 0.500094278621226 0.500231642026773 0 0 hm5C_site_46105 DeepMRMD:0;iRNA_m5C:0 46106 chr17 33513459 33513459 1 + G T LUAD 33513456 + 33513436 33513476 41 AGCTGGTGGAGAGTGAGCTGCTGGAGATCCTGACTGTGGTG AGCTGGTGGAGAGTGAGCTGCTGTAGATCCTGACTGTGGTG < 41bp 0.835688233702909 0.486230046235352 0.8005787 0.57830334 prediction 0.671376467405818 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33513456 chr17:33513459 stopgain 1.000 1 24 hm5C_associated_SNPs_50754 0 0 0 0 0 Nucleus 0.500231458061079 0.500231643546827 0.44455072 0 hm5C_site_46106 DeepMRMD:0.44455072;iRNA_m5C:0 46107 chr2 218999848 218999848 1 + G T UCEC 218999845 + 218999825 218999865 41 TTGCCCATCTGGGCCGCCTCCAAGGTGAATGGCTGGATTTT TTGCCCATCTGGGCCGCCTCCAATGTGAATGGCTGGATTTT < 41bp 0.835670625707066 0.469660082904533 0.89751637 0.1481815 prediction 0.671341251414131 Functional Loss - CXCR2 ENSG00000180871 CDS Human protein_coding chr2:218999845 chr2:218999848 nonsynonymous SNV 0.032 1 24 hm5C_associated_SNPs_50755 0 0 0 0 0 exosome 0.500231643921092 0.500231637059737 0.79503274 1.37227103014226e-08 hm5C_site_46107 DeepMRMD:0.79503274;iRNA_m5C:1.37227103014226e-08 46108 chr19 58806101 58806101 1 + A C rs570466227 58806097 + 58806077 58806117 41 CCAGCATGAGCGCATCCACACTGGAGACAAGCCCTACAAGT CCAGCATGAGCGCATCCACACTGGCGACAAGCCCTACAAGT < 41bp 0.835660517597664 0.468849772993264 0.12576395 0.17404151 prediction 0.671321035195327 Functional Loss - ZNF8 ENSG00000083842;ENSG00000273439 CDS Human other chr19:58806097 chr19:58806101 synonymous SNV . 0 25 hm5C_associated_SNPs_50756 0 0 1 0 0 chromatin 0.50023157083158 0.500230798683249 0 1.54429666210376e-06 hm5C_site_46108 DeepMRMD:0;iRNA_m5C:1.54429666210376e-06 46109 chr1 18808185 18808185 1 + G T SKCM 18808182 + 18808162 18808202 41 AGGGGTCAGCAGAGAAGAGGCTGGGGCTCTCGAGGCTGCCT AGGGGTCAGCAGAGAAGAGGCTGTGGCTCTCGAGGCTGCCT < 41bp 0.835650411452786 0.474030799547837 0.5679517 0.15139595 prediction 0.671300822905571 Functional Loss - KLHDC7A ENSG00000179023 CDS Human protein_coding chr1:18808182 chr1:18808185 nonsynonymous SNV 0.064 1 24 hm5C_associated_SNPs_50757 0 0 0 0 0 Cytosol 0.500231510589987 0.500231643921089 0.1359034 0 hm5C_site_46109 DeepMRMD:0.1359034;iRNA_m5C:0 46110 chr11 65124524 65124524 1 + A C UCEC 65124520 + 65124500 65124540 41 ATGTAAGGAGGAGATAGGCACTGAAGACGAGAAGGGGGACA ATGTAAGGAGGAGATAGGCACTGACGACGAGAAGGGGGACA < 41bp 0.835646970381555 0.477008889054372 0.3188526 0.26244903 prediction 0.671293940763109 Functional Loss - TIGD3 ENSG00000173825 CDS Human protein_coding chr11:65124520 chr11:65124524 nonsynonymous SNV 0.439 0 25 hm5C_associated_SNPs_50758 0 0 0 0 0 Endoplasmic reticulum 0.500231645858324 0.50023164978356 0 0 hm5C_site_46110 DeepMRMD:0;iRNA_m5C:0 46111 chr14 103805095 103805095 1 + G T SARC 103805092 + 103805072 103805112 41 GAAGAAGAGGAGGATGATGACTGGGGAGAAGATACAACTGA GAAGAAGAGGAGGATGATGACTGTGGAGAAGATACAACTGA < 41bp 0.845349719976301 0.509707172479226 0.49817383 0.37431794 prediction 0.671285094994151 Functional Loss - EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805092 chr14:103805095 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_50759 0 0 1 0 1 Cytosol 0.500231645644596 0.500231643926016 0 3.4371612223083e-09 hm5C_site_46111 DeepMRMD:0;iRNA_m5C:3.4371612223083e-09 46112 chr1 150131499 150131499 1 + G T COAD 150131496 + 150131476 150131516 41 GGAGATGGGAAGCGAAAGGCCAAGGACCCCCCTCGGTCTCC GGAGATGGGAAGCGAAAGGCCAATGACCCCCCTCGGTCTCC < 41bp 0.835632563279847 0.461697287776155 0.46596742 0.046605676 prediction 0.671265126559694 Functional Loss - PLEKHO1 ENSG00000023902 CDS Human protein_coding chr1:150131496 chr1:150131499 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50760 0 0 1 0 0 Ribosome 0.500231643921093 0.500231644731803 0 0 hm5C_site_46112 DeepMRMD:0;iRNA_m5C:0 46113 chr8 11606502 11606502 1 + G T LUAD 11606499 + 11606479 11606519 41 TGTCCACCCCGCTCTGGAGGCGAGATGGGACGGGTCACTAT TGTCCACCCCGCTCTGGAGGCGATATGGGACGGGTCACTAT < 41bp 0.835592933996924 0.483189731159438 0.9162539 0.831288 prediction 0.671185867993848 Functional Loss - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11606499 chr8:11606502 nonsynonymous SNV 0.900 5 24 hm5C_associated_SNPs_50761 0 0 1 0 3 cytosol 0.500231946826112 0.500231701776434 0.1699318 4.90099354877316e-07 hm5C_site_46113 DeepMRMD:0.1699318;iRNA_m5C:4.90099354877316e-07 46114 chrX 51639931 51639931 1 + G T LUSC 51639928 + 51639908 51639948 41 GGCAGACCCCACCGGGCTGGCAGGGTCCTCCAGACTGGCAA GGCAGACCCCACCGGGCTGGCAGTGTCCTCCAGACTGGCAA < 41bp 0.835591077772717 0.482375477167282 0.8761766 0.0776349 prediction 0.671182155545434 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51639928 chrX:51639931 nonsynonymous SNV 0.925 2 24 hm5C_associated_SNPs_50762 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921111 0.7523532 0 hm5C_site_46114 DeepMRMD:0.7523532;iRNA_m5C:0 46115 chr8 143763518 143763518 1 + G T HNSC 143763515 + 143763495 143763535 41 TCCTTGCGCTGCTCCCTGCACTCGGCCTGCTGCTCTGGGGA TCCTTGCGCTGCTCCCTGCACTCTGCCTGCTGCTCTGGGGA < 41bp 0.835573322410366 0.473116717359521 0.33650982 0.20741278 prediction 0.671146644820732 Functional Loss - PSCA ENSG00000167653 CDS Human protein_coding chr8:143763515 chr8:143763518 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_50763 0 0 0 0 0 exosome 0.500231641559238 0.500231608328416 0 6.64616430778864e-08 hm5C_site_46115 DeepMRMD:0;iRNA_m5C:6.64616430778864e-08 46116 chr3 183882370 183882370 1 + G T LUSC 183882367 + 183882347 183882387 41 GCCCAGCGAGAGCGGCCACGCCGGAGGGATGGCCCAGAGCA GCCCAGCGAGAGCGGCCACGCCGTAGGGATGGCCCAGAGCA < 41bp 0.83555690139343 0.478221370452191 0.6379616 0.11868635 prediction 0.671113802786859 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882367 chr3:183882370 synonymous SNV . 0 24 hm5C_associated_SNPs_50764 0 0 1 0 1 Cytosol 0.500231663029249 0.500231643932765 0.2759232 3.81929681214643e-08 hm5C_site_46116 DeepMRMD:0.2759232;iRNA_m5C:3.81929681214643e-08 46117 chr16 31424225 31424225 1 + G T LUSC 31424222 + 31424202 31424242 41 GGCAGGCGCTGAGTGGGGGTCAGGACCTCACCCAGGATGGA GGCAGGCGCTGAGTGGGGGTCAGTACCTCACCCAGGATGGA < 41bp 0.86548586166986 0.52994161239326 0.8599666 0.26786447 prediction 0.671088498553199 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31424222 chr16:31424225 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50765 0 0 0 0 2 nucleolus 0.500231644417783 0.500231643921092 0.7199332 9.93381155112161e-10 hm5C_site_46117 DeepMRMD:0.7199332;iRNA_m5C:9.93381155112161e-10 46118 chr3 129817100 129817100 1 + C A rs145821517 129817103 - 129817083 129817123 41 GAACTGGTTTAGCTTGCCTTCAGGATCAGGAAAGTTTGAGA GAACTGGTTTAGCTTGCCTTCAGTATCAGGAAAGTTTGAGA < 41bp 0.842912323630011 0.507405782351486 0.43930554 0.021358877 prediction 0.67101308255705 Functional Loss - FAM86HP ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129817103 chr3:129817100 . . 0 24 hm5C_associated_SNPs_50766 0 0 0 0 0 unknown 0.500231643591243 0.500231643920328 0 0 hm5C_site_46118 DeepMRMD:0;iRNA_m5C:0 46119 chr16 86544433 86544433 1 + G T LUAD 86544430 + 86544410 86544450 41 CAGAGCCGCTTCCCCTTCTTCCGGGGCTCCTACCAGGGCTG CAGAGCCGCTTCCCCTTCTTCCGTGGCTCCTACCAGGGCTG < 41bp 0.835503874560637 0.476791080227239 0.93458426 0.31072822 prediction 0.671007749121274 Functional Loss - FOXF1 ENSG00000103241 CDS Human protein_coding chr16:86544430 chr16:86544433 synonymous SNV . 0 24 hm5C_associated_SNPs_50767 0 0 0 0 0 Cytoplasm 0.500231643921092 0.500231643921094 0.86916852 0 hm5C_site_46119 DeepMRMD:0.86916852;iRNA_m5C:0 46120 chr11 55861266 55861266 1 + G T LUAD 55861263 + 55861243 55861283 41 ACAAGCTCGCTGATATCTGTCTGGGTGATAAGCAGTTTGGC ACAAGCTCGCTGATATCTGTCTGTGTGATAAGCAGTTTGGC < 41bp 0.837040560588868 0.501543119151935 0.58932215 0.1231896 prediction 0.670994882873866 Functional Loss - OR8I2 ENSG00000172154 CDS Human protein_coding chr11:55861263 chr11:55861266 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50768 0 0 0 0 0 unknown 0.500233099270838 0.50022943143648 0.1786443 7.3356687160242e-06 hm5C_site_46120 DeepMRMD:0.1786443;iRNA_m5C:7.3356687160242e-06 46121 chr3 17053602 17053602 1 + A C UCEC 17053598 + 17053578 17053618 41 AAAACCGTGGATGAGGTATTCAAGAATGCCCAGCCCCCTAT AAAACCGTGGATGAGGTATTCAAGCATGCCCAGCCCCCTAT < 41bp 0.835493743023977 0.481489672256212 0.8204868 0.5061202 prediction 0.670987486047953 Functional Loss - PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17053598 chr3:17053602 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_50769 0 0 1 0 1 nucleus 0.500231643921092 0.500231643921092 0.6287332 0 hm5C_site_46121 DeepMRMD:0.6287332;iRNA_m5C:0 46122 chr12 55420520 55420520 1 + G T UCEC 55420517 + 55420497 55420537 41 GCTAATGCCAGAGAACGGACCCGGATGCATGGCCTGAATGA GCTAATGCCAGAGAACGGACCCGTATGCATGGCCTGAATGA < 41bp 0.835629275020496 0.500141337223142 0.8948455 0.32925555 prediction 0.670975875594708 Functional Loss - NEUROD4 ENSG00000123307 CDS Human protein_coding chr12:55420517 chr12:55420520 synonymous SNV . 0 24 hm5C_associated_SNPs_50770 0 0 0 0 0 Cytosol 0.500231644134822 0.500230790123756 0.789691 1.708022131508e-06 hm5C_site_46122 DeepMRMD:0.789691;iRNA_m5C:1.708022131508e-06 46123 chr11 13716346 13716346 1 + A C READ 13716342 + 13716322 13716362 41 ATCCCAGAATACTATGAAGGCAAGAACGTCCTCCTCACAGG ATCCCAGAATACTATGAAGGCAAGCACGTCCTCCTCACAGG < 41bp 0.835484357985237 0.484634938470828 0.19295785 0.13537964 prediction 0.670968715970473 Functional Loss - FAR1 ENSG00000197601 CDS Human protein_coding chr11:13716342 chr11:13716346 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_50771 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_46123 DeepMRMD:0;iRNA_m5C:0 46124 chr1 11204802 11204802 1 + G T UCEC 11204799 + 11204779 11204819 41 CCAGCTCGGACAGCATGTGGCAAGAAACCATGGCCTGATGG CCAGCTCGGACAGCATGTGGCAATAAACCATGGCCTGATGG < 41bp 0.835461957740001 0.496519853254241 0.14623654 0.07053068 prediction 0.670923915480003 Functional Loss - MTOR ENSG00000198793 CDS Human protein_coding chr1:11204799 chr1:11204802 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50772 0 0 0 0 1 Nucleus 0.500231133847982 0.500231643921603 0 0 hm5C_site_46124 DeepMRMD:0;iRNA_m5C:0 46125 chr2 241533429 241533429 1 + G T HNSC 241533426 + 241533406 241533446 41 CTGCTGCGGATCCAGAACCCCTGGGGCCGGCGGTGCTGGCA CTGCTGCGGATCCAGAACCCCTGTGGCCGGCGGTGCTGGCA < 41bp 0.84060680015961 0.505149060776066 0.86389923 0.32148582 prediction 0.670915478767088 Functional Loss - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533426 chr2:241533429 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50773 0 0 0 0 1 cytosol 0.500231643501867 0.500229947644691 0.72779846 3.39171435248531e-06 hm5C_site_46125 DeepMRMD:0.72779846;iRNA_m5C:3.39171435248531e-06 46126 chr5 167891839 167891839 1 + G T LUAD 167891836 + 167891816 167891856 41 CCTGGCACAGCCAATTGACCCAGGAGATCTCGGTGCTGAAG CCTGGCACAGCCAATTGACCCAGTAGATCTCGGTGCTGAAG < 41bp 0.851817325474943 0.516362786627606 0.89893496 0.62568897 prediction 0.670909077694676 Functional Loss - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167891836 chr5:167891839 stopgain 1.000 1 24 hm5C_associated_SNPs_50774 0 0 0 0 0 Ribosome 0.500231643966543 0.500231643921094 0.54649198 9.08988440073699e-11 hm5C_site_46126 DeepMRMD:0.54649198;iRNA_m5C:9.08988440073699e-11 46127 chr16 89663001 89663001 1 + G T LUAD 89662998 + 89662978 89663018 41 GAGAAGCCTGGGTGTCCCTGCCGGAGAGGCCAGCCCAGGCT GAGAAGCCTGGGTGTCCCTGCCGTAGAGGCCAGCCCAGGCT < 41bp 0.835439230186307 0.493575215837172 0.90954304 0.23577654 prediction 0.670878460372614 Functional Loss - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89662998 chr16:89663001 stopgain 0.000 0 24 hm5C_associated_SNPs_50775 0 0 0 0 0 Nucleus 0.500231643921091 0.500231643921084 0.81908608 1.4432899320127e-14 hm5C_site_46127 DeepMRMD:0.81908608;iRNA_m5C:1.4432899320127e-14 46128 chr20 20079339 20079339 1 + G T LUAD 20079336 + 20079316 20079356 41 TGGGTTCATGAGTGTGTGCTCAAGAGTGAACATGCAACTGC TGGGTTCATGAGTGTGTGCTCAATAGTGAACATGCAACTGC < 41bp 0.835433252013325 0.492641881708288 0.8150157 0.19655651 prediction 0.670866504026649 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20079336 chr20:20079339 nonsynonymous SNV 0.914 0 24 hm5C_associated_SNPs_50776 0 0 0 0 1 nucleus 0.500234976648093 0.500231524813508 0.6300314 6.90366916944463e-06 hm5C_site_46128 DeepMRMD:0.6300314;iRNA_m5C:6.90366916944463e-06 46129 chr12 56514687 56514687 1 + G T LUAD 56514684 + 56514664 56514704 41 GAAGACAGGAGAGCTTCCCCCACGGCTGAGGCAGAAAGTAG GAAGACAGGAGAGCTTCCCCCACTGCTGAGGCAGAAAGTAG < 41bp 0.835406421477756 0.483522011373507 0.41082907 0.1253865 prediction 0.670812842955513 Functional Loss - ZC3H10 ENSG00000135482 CDS Human protein_coding chr12:56514684 chr12:56514687 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_50777 0 0 1 0 0 Ribosome 0.500231643921295 0.500231643877842 0 8.69053717877932e-11 hm5C_site_46129 DeepMRMD:0;iRNA_m5C:8.69053717877932e-11 46130 chr11 118184528 118184528 1 + G T THYM 118184525 + 118184505 118184545 41 CTGCTGGTTTACTACTGGAGCAAGAATAGAAAGGCCAAGGC CTGCTGGTTTACTACTGGAGCAATAATAGAAAGGCCAAGGC < 41bp 0.835391029544384 0.476067425549364 0.26449573 0.33253264 prediction 0.670782059088768 Functional Loss - CD3E ENSG00000198851 CDS Human protein_coding chr11:118184525 chr11:118184528 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_50778 0 0 0 0 1 exosome 0.500231648372312 0.500231643715018 0 9.31458754571679e-09 hm5C_site_46130 DeepMRMD:0;iRNA_m5C:9.31458754571679e-09 46131 chr16 89702774 89702774 1 + G T UCEC 89702771 + 89702751 89702791 41 ACCGCATGTGCCGGATGTACCCGGAGACCTTCCTGTATGTC ACCGCATGTGCCGGATGTACCCGTAGACCTTCCTGTATGTC < 41bp 0.835369309448564 0.47173117922371 0.88558376 0.091828495 prediction 0.670738618897128 Functional Loss - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89702771 chr16:89702774 stopgain 0.109 1 24 hm5C_associated_SNPs_50779 0 0 0 0 1 Ribosome 0.50020807319839 0.500231635677046 0.77116752 0 hm5C_site_46131 DeepMRMD:0.77116752;iRNA_m5C:0 46132 chr1 28203200 28203200 1 + A C GBM 28203196 + 28203176 28203216 41 CAGAAGGTGGTCTGTGAGAACCCGAAGACCAGCCAGACCAT CAGAAGGTGGTCTGTGAGAACCCGCAGACCAGCCAGACCAT < 41bp 0.83536263504535 0.457020436410563 0.28822917 0.21064901 prediction 0.6707252700907 Functional Loss - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28203196 chr1:28203200 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_50780 0 0 0 0 0 chromatin 0.500231643921073 0.500231643921121 0 0 hm5C_site_46132 DeepMRMD:0;iRNA_m5C:0 46133 chr19 56382275 56382275 1 + G T LUAD 56382272 + 56382252 56382292 41 GTAACAAGAGCGTGCGCTATCTAGACCTCAGTGCCAATGTC GTAACAAGAGCGTGCGCTATCTATACCTCAGTGCCAATGTC < 41bp 0.852012243935171 0.516667978088248 0.12757218 0.042970836 prediction 0.670688531693846 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56382272 chr19:56382275 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_50781 0 0 0 0 2 exosome 0.500231643906704 0.500231643921086 0 0 hm5C_site_46133 DeepMRMD:0;iRNA_m5C:0 46134 chr22 24122848 24122848 1 + G T KIRC 24122845 + 24122825 24122865 41 CCTTCTTCCCCAAGACTCACCGAGAAGGGGATGTCCACTTC CCTTCTTCCCCAAGACTCACCGATAAGGGGATGTCCACTTC < 41bp 0.860271243014453 0.524952982095737 0.08587468 0.0059559047 prediction 0.670636521837432 Functional Loss - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24122845 chr22:24122848 stopgain 1.000 1 24 hm5C_associated_SNPs_50782 0 0 0 0 1 Endoplasmic reticulum 0.500231643481799 0.500231643921092 0 0 hm5C_site_46134 DeepMRMD:0;iRNA_m5C:0 46135 chr10 94828094 94828094 1 + G T UCEC 94828091 + 94828071 94828111 41 CTGCAGGGCTACCAGATCCCCAAGGGCTGGAGCGTGATGTA CTGCAGGGCTACCAGATCCCCAATGGCTGGAGCGTGATGTA < 41bp 0.835264895515249 0.479846834570626 0.90310454 0.23997128 prediction 0.670529791030498 Functional Loss - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94828091 chr10:94828094 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_50783 0 0 0 0 1 exosome 0.500231643921092 0.500231643905301 0.80620908 3.15822923369069e-11 hm5C_site_46135 DeepMRMD:0.80620908;iRNA_m5C:3.15822923369069e-11 46136 chr19 7671380 7671380 1 + G T CESC 7671377 + 7671357 7671397 41 TCCAGACCGTCCGGCGGCTGCAGGAGAAGACCGAGCAGGAA TCCAGACCGTCCGGCGGCTGCAGTAGAAGACCGAGCAGGAA < 41bp 0.835262684771292 0.492245633939416 0.92726 0.88924646 prediction 0.670525369542584 Functional Loss - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7671377 chr19:7671380 stopgain 0.997 0 24 hm5C_associated_SNPs_50784 0 0 1 0 2 nucleus 0.50022182289568 0.500231643607865 0.07602708 0 hm5C_site_46136 DeepMRMD:0.07602708;iRNA_m5C:0 46137 chr12 126128738 126128738 1 + G T HNSC 126128735 + 126128715 126128755 41 TCCCAGTTCGAGGTCACTGTCTGGGCACCCAGGCTCCCCCT TCCCAGTTCGAGGTCACTGTCTGTGCACCCAGGCTCCCCCT < 41bp 0.853501799481191 0.518239523987381 0.93635404 0.2179555 prediction 0.670524550987619 Functional Loss - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126128735 chr12:126128738 nonsynonymous SNV 0.815 4 24 hm5C_associated_SNPs_50785 0 0 0 0 1 exosome 0.500231643847338 0.500231643921092 0.87270808 0 hm5C_site_46137 DeepMRMD:0.87270808;iRNA_m5C:0 46138 chr19 19338800 19338800 1 + G T LUSC 19338797 + 19338777 19338817 41 CCTCAGTGTACAGCAAAGGGCTGGATGCAAGTTCCCCATCT CCTCAGTGTACAGCAAAGGGCTGTATGCAAGTTCCCCATCT < 41bp 0.863869539578742 0.52863157301211 0.21375799 0.08857441 prediction 0.670475933133264 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19338797 chr19:19338800 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_50786 0 0 0 0 0 exosome 0.500231643981325 0.500231643921093 0 1.20464527242348e-10 hm5C_site_46138 DeepMRMD:0;iRNA_m5C:1.20464527242348e-10 46139 chr6 25726706 25726706 1 + G T UCEC 25726703 + 25726683 25726723 41 GCAAACCCGCTCTAGAAGAGCGAGACTTAGACTTGGCGCGT GCAAACCCGCTCTAGAAGAGCGATACTTAGACTTGGCGCGT < 41bp 0.843893687329367 0.508694835156655 0.48418474 0.104200035 prediction 0.670397704345423 Functional Loss - HIST1H2AA ENSG00000164508 CDS Human protein_coding chr6:25726703 chr6:25726706 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_50787 0 0 0 0 0 unknown 0.500231643939513 0.500231643876843 0 1.25339516543477e-10 hm5C_site_46139 DeepMRMD:0;iRNA_m5C:1.25339516543477e-10 46140 chr10 134464009 134464009 1 + G T HNSC 134464006 + 134463986 134464026 41 TACAAATCCCAGGAGCACTTCACGGTGAGTCCCTCCCGCTG TACAAATCCCAGGAGCACTTCACTGTGAGTCCCTCCCGCTG < 41bp 0.835171456116966 0.47771002762997 0.8939591 0.3220189 prediction 0.670342912233931 Functional Loss - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134464006 chr10:134464009 synonymous SNV . 0 24 hm5C_associated_SNPs_50788 0 0 1 0 2 Nucleus 0.500231650885239 0.50023164553528 0.7879182 1.06999182847289e-08 hm5C_site_46140 DeepMRMD:0.7879182;iRNA_m5C:1.06999182847289e-08 46141 chr1 244538733 244538733 1 + G T UCEC 244538730 + 244538710 244538750 41 CTATTACCCTGGGCAGCTGGCAAGACTCCATTTTGATCATA CTATTACCCTGGGCAGCTGGCAATACTCCATTTTGATCATA < 41bp 0.851632314403619 0.516523170118856 0.10156378 0.02998209 prediction 0.670218288569526 Functional Loss - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244538730 chr1:244538733 nonsynonymous SNV 0.939 4 24 hm5C_associated_SNPs_50789 0 0 1 0 2 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_46141 DeepMRMD:0;iRNA_m5C:0 46142 chr4 69972945 69972945 1 + G T LUAD 69972942 + 69972922 69972962 41 AGATACCTTAGGTCTCAATACTCGGCTCTACAAGTGGATAC AGATACCTTAGGTCTCAATACTCTGCTCTACAAGTGGATAC < 41bp 0.836443985100436 0.501335323126055 0.46942776 0.13924822 prediction 0.670217323948762 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69972942 chr4:69972945 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_50790 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231583539817 0 1.2076255173632e-07 hm5C_site_46142 DeepMRMD:0;iRNA_m5C:1.2076255173632e-07 46143 chrX 153049813 153049813 1 + G T UCEC 153049810 + 153049790 153049830 41 CCCCAAAATGCAGATAAGATCAAGATCAAGATCGCAGACCT CCCCAAAATGCAGATAAGATCAATATCAAGATCGCAGACCT < 41bp 0.85992015798307 0.52481285224681 0.39235216 0.06897262 prediction 0.670214611472521 Functional Loss - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049810 chrX:153049813 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_50791 0 0 0 0 2 chromatin 0.500231643920966 0.500231643916939 0 8.05422395444566e-12 hm5C_site_46143 DeepMRMD:0;iRNA_m5C:8.05422395444566e-12 46144 chrX 135572500 135572500 1 + G T UCEC 135572497 + 135572477 135572517 41 CTGTCTCTAAGAAGCTCTTGCAAGAAATACATTCTCTGCTG CTGTCTCTAAGAAGCTCTTGCAATAAATACATTCTCTGCTG < 41bp 0.842203875367896 0.50712090757736 0.29184502 0.029102266 prediction 0.670165935581072 Functional Loss - BRS3 ENSG00000102239 CDS Human protein_coding chrX:135572497 chrX:135572500 stopgain 1.000 1 24 hm5C_associated_SNPs_50792 0 0 0 0 0 unknown 0.500230786235241 0.500344724958142 0 0 hm5C_site_46144 DeepMRMD:0;iRNA_m5C:0 46145 chr10 73082652 73082652 1 + G T LUSC 73082649 + 73082629 73082669 41 CCCCCTGGCCTGCAGAGGCCCGAGGACCGCTTCTGTGGCAC CCCCCTGGCCTGCAGAGGCCCGATGACCGCTTCTGTGGCAC < 41bp 0.835059735179814 0.464038377302334 0.5580129 0.06508583 prediction 0.670119470359627 Functional Loss - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73082649 chr10:73082652 nonsynonymous SNV 0.895 0 24 hm5C_associated_SNPs_50793 0 0 1 0 0 chromatin 0.500231778472273 0.500231693779107 0.1160258 1.6938633051744e-07 hm5C_site_46145 DeepMRMD:0.1160258;iRNA_m5C:1.6938633051744e-07 46146 chr19 56459511 56459511 1 + G T HNSC 56459508 + 56459488 56459528 41 GACCAGGTCGAGACAGCCAGCTGGGCAGAGGTGGTTCATCT GACCAGGTCGAGACAGCCAGCTGTGCAGAGGTGGTTCATCT < 41bp 0.835030930896708 0.485085003207193 0.26649356 0.22890574 prediction 0.670061861793417 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56459508 chr19:56459511 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_50794 0 0 0 0 0 unknown 0.500231643919159 0.500160359747446 0 0.000142568343425742 hm5C_site_46146 DeepMRMD:0;iRNA_m5C:0.000142568343425742 46147 chr3 38158718 38158718 1 + G T BLCA 38158715 + 38158695 38158735 41 GTAGGTGGAAAGGGAGATTCCAGGGAAGAGGCATCGCCTGC GTAGGTGGAAAGGGAGATTCCAGTGAAGAGGCATCGCCTGC < 41bp 0.856787872942814 0.521772326123822 0.89979446 0.7702892 prediction 0.670031093637985 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38158715 chr3:38158718 nonsynonymous SNV 0.244 4 24 hm5C_associated_SNPs_50795 0 0 0 0 3 chromatin 0.500231642330222 0.500231643921092 0.25901052 0 hm5C_site_46147 DeepMRMD:0.25901052;iRNA_m5C:0 46148 chr12 4921147 4921147 1 + A C rs11063345 4921143 + 4921123 4921163 41 TCAAGGAACAGCAATGTCAACAGGATGGAAACCAGCCCTAT TCAAGGAACAGCAATGTCAACAGGCTGGAAACCAGCCCTAT < 41bp 0.83501204044971 0.490235449004853 0.7751157 0.59755766 prediction 0.67002408089942 Functional Loss - KCNA6 ENSG00000151079 UTR3 Human protein_coding chr12:4921143 chr12:4921147 . . 0 25 hm5C_associated_SNPs_50796 0 0 0 0 0 exosome 0.500231643920829 0.500231643921092 0.35511608 0 hm5C_site_46148 DeepMRMD:0.35511608;iRNA_m5C:0 46149 chr19 17638144 17638144 1 + A C rs200304763 17638140 + 17638120 17638160 41 GGAAGAGGAGCCCCGGGAGACGACAGCAGCATGGGTGGGCG GGAAGAGGAGCCCCGGGAGACGACCGCAGCATGGGTGGGCG < 41bp 0.844437422139904 0.50943150902609 0.49911183 0.55649114 prediction 0.670011826227628 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17638140 chr19:17638144 nonsynonymous SNV 0.023 1 25 hm5C_associated_SNPs_50797 0 0 0 0 1 exosome 0.50023164392196 0.500231643940309 0 0 hm5C_site_46149 DeepMRMD:0;iRNA_m5C:0 46150 chr12 58109591 58109591 1 + G T LUAD 58109588 + 58109568 58109608 41 TCTCTGGGGACTACATCGATCGCGTGGACGAGCCCTTGTCC TCTCTGGGGACTACATCGATCGCTTGGACGAGCCCTTGTCC < 41bp 0.851590321068124 0.516603822011492 0.566393 0.11195922 prediction 0.669972998113264 Functional Loss - OS9 ENSG00000135506 CDS Human protein_coding chr12:58109588 chr12:58109591 nonsynonymous SNV 0.577 3 24 hm5C_associated_SNPs_50798 0 0 1 0 1 Nucleus 0.500231750993288 0.500231642298644 0.132786 2.17389287238134e-07 hm5C_site_46150 DeepMRMD:0.132786;iRNA_m5C:2.17389287238134e-07 46151 chr6 27833380 27833380 1 + A C rs190008233 27833376 + 27833356 27833396 41 AGAAGACCCGCATTATCCCGCGCCACTTGCAGCTGGCCATC AGAAGACCCGCATTATCCCGCGCCCCTTGCAGCTGGCCATC < 41bp 0.85949971833305 0.524521475720876 0.13710529 0.09460381 prediction 0.669956485224347 Functional Loss - HIST1H2AL ENSG00000198374 CDS Human other chr6:27833376 chr6:27833380 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_50799 0 0 1 0 0 exosome 0.500231643947484 0.500231643922123 0 5.07218711476298e-11 hm5C_site_46151 DeepMRMD:0;iRNA_m5C:5.07218711476298e-11 46152 chr19 44740634 44740634 1 + G T LUAD 44740631 + 44740611 44740651 41 ATACCATCAGAGAGGCCACACTGGAGAAAAACCTTACAAAT ATACCATCAGAGAGGCCACACTGTAGAAAAACCTTACAAAT < 41bp 0.835879658991447 0.500911688840366 0.12613103 0.0291996 prediction 0.669935940302163 Functional Loss - ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44740631 chr19:44740634 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_50800 0 0 1 0 0 cytosol 0.500231627916223 0.500230267725073 0 2.72038229987004e-06 hm5C_site_46152 DeepMRMD:0;iRNA_m5C:2.72038229987004e-06 46153 chr13 31480828 31480828 1 + G T LUAD 31480825 + 31480805 31480845 41 CGGCGACCAGCTCGTGGTGGCCAGGCCCGGGGAGCCGGCGG CGGCGACCAGCTCGTGGTGGCCATGCCCGGGGAGCCGGCGG < 41bp 0.852813022993131 0.517884381443322 0.863235 0.83061385 prediction 0.669857283099618 Functional Loss - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31480825 chr13:31480828 nonsynonymous SNV 0.397 1 24 hm5C_associated_SNPs_50801 0 0 0 0 0 exosome 0.500231643921218 0.500231644770676 0.0652423 0 hm5C_site_46153 DeepMRMD:0.0652423;iRNA_m5C:0 46154 chr5 140480990 140480990 1 + G T LUAD 140480987 + 140480967 140481007 41 CGCTCTATGAGGTTGCAGTTCTAGAGAATACCCCCGTTAAC CGCTCTATGAGGTTGCAGTTCTATAGAATACCCCCGTTAAC < 41bp 0.834923379687181 0.481450198162556 0.15160128 0.16625357 prediction 0.669846759374362 Functional Loss - PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140480987 chr5:140480990 stopgain 0.498 0 24 hm5C_associated_SNPs_50802 0 0 0 0 0 exosome 0.500231643921092 0.500231643921085 0 1.46549439250521e-14 hm5C_site_46154 DeepMRMD:0;iRNA_m5C:1.46549439250521e-14 46155 chrX 101822895 101822895 1 + G T ACC 101822892 + 101822872 101822912 41 GTGGGAGCACCCATCCTGTCCTGGAGCCAATGGTGTGGTAA GTGGGAGCACCCATCCTGTCCTGTAGCCAATGGTGTGGTAA < 41bp 0.856455246791615 0.52153210262551 0.40876126 0.21254972 prediction 0.66984628833221 Functional Loss - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101822892 chrX:101822895 . . 0 24 hm5C_associated_SNPs_50803 0 0 0 0 0 unknown 0.500217567572834 0.500231785800528 0 0 hm5C_site_46155 DeepMRMD:0;iRNA_m5C:0 46156 chr7 143807577 143807577 1 + A C LUAD 143807573 + 143807553 143807593 41 ATGCTCAGTTGAAGGGCGCCCTCCACAGAGCACTCCAGAGG ATGCTCAGTTGAAGGGCGCCCTCCCCAGAGCACTCCAGAGG < 41bp 0.866295829245917 0.531410553665234 0.90828884 0.03774354 prediction 0.669770551161365 Functional Loss - OR2A2 ENSG00000221989 CDS Human protein_coding chr7:143807573 chr7:143807577 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_50804 0 0 0 0 0 unknown 0.500231655839108 0.500231643921882 0.81657768 2.38344510794519e-08 hm5C_site_46156 DeepMRMD:0.81657768;iRNA_m5C:2.38344510794519e-08 46157 chr17 62080248 62080248 1 + C A rs141394372 62080251 - 62080231 62080271 41 AGCCAGATGGTCATCATAGTCACGGTGGTGTCGGTGTTGCT AGCCAGATGGTCATCATAGTCACTGTGGTGTCGGTGTTGCT < 41bp 0.855415409196076 0.520541796895267 0.90966636 0.5044398 prediction 0.669747224601619 Functional Loss - ICAM2 ENSG00000108622 CDS Human protein_coding chr17:62080251 chr17:62080248 synonymous SNV . 0 24 hm5C_associated_SNPs_50805 0 0 1 0 1 Endoplasmic reticulum 0.500231516276175 0.500233728318346 0.81045312 0 hm5C_site_46157 DeepMRMD:0.81045312;iRNA_m5C:0 46158 chr19 33167566 33167566 1 + A C rs558890871 33167562 + 33167542 33167582 41 GCGGCGCGCGCGCTGAGCACCCGCAGCCTGCGGCTCGAGGC GCGGCGCGCGCGCTGAGCACCCGCCGCCTGCGGCTCGAGGC < 41bp 0.834872969370374 0.49162015962536 0.24408641 0.2278631 prediction 0.669745938740749 Functional Loss - RGS9BP ENSG00000186326 CDS Human protein_coding chr19:33167562 chr19:33167566 nonsynonymous SNV 0.676 0 25 hm5C_associated_SNPs_50806 0 0 0 0 0 exosome 0.500231643919206 0.50023164483158 0 0 hm5C_site_46158 DeepMRMD:0;iRNA_m5C:0 46159 chr11 608731 608731 1 + G T HNSC 608728 + 608708 608748 41 CAGCCGGAGGACGTCCCGGTCGCGGTCGGGGAGCCCTGGCA CAGCCGGAGGACGTCCCGGTCGCTGTCGGGGAGCCCTGGCA < 41bp 0.860491435996621 0.525634153280271 0.8915938 0.13527033 prediction 0.6697145654327 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:608728 chr11:608731 nonsynonymous SNV 0.014 2 24 hm5C_associated_SNPs_50807 0 0 1 0 0 Nucleus 0.50023164369442 0.500231643920815 0.7831876 0 hm5C_site_46159 DeepMRMD:0.7831876;iRNA_m5C:0 46160 chr5 33467732 33467732 1 + G T LUAD 33467729 + 33467709 33467749 41 ACAAGAGACAATAAGGTCCACGGGGAACGCACCATTTCTGA ACAAGAGACAATAAGGTCCACGGTGAACGCACCATTTCTGA < 41bp 0.847264101002476 0.512410255394836 0.45391285 0.076075256 prediction 0.66970769121528 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33467729 chr5:33467732 synonymous SNV . 0 24 hm5C_associated_SNPs_50808 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643916154 0 9.87587789325062e-12 hm5C_site_46160 DeepMRMD:0;iRNA_m5C:9.87587789325062e-12 46161 chr19 35836618 35836618 1 + A C SKCM 35836614 + 35836594 35836634 41 CTTTCCCGAGATGAACATACCACGAACTGGGTACTGAGGGT CTTTCCCGAGATGAACATACCACGCACTGGGTACTGAGGGT < 41bp 0.834831560035954 0.463006754420167 0.35495752 0.21903044 prediction 0.669663120071909 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35836614 chr19:35836618 synonymous SNV . 0 25 hm5C_associated_SNPs_50809 0 0 0 0 1 Endoplasmic reticulum 0.5002316448925 0.500231643236944 0 3.31111360551972e-09 hm5C_site_46161 DeepMRMD:0;iRNA_m5C:3.31111360551972e-09 46162 chr19 50964954 50964954 1 + G T UCEC 50964951 + 50964931 50964971 41 AAGAACACGGCCCGCATCCTCAAGACAGGTACAGCCATCCT AAGAACACGGCCCGCATCCTCAATACAGGTACAGCCATCCT < 41bp 0.856752273330607 0.521924950922528 0.41813603 0.17394301 prediction 0.669654644816158 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50964951 chr19:50964954 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_50810 0 0 0 0 1 exosome 0.500231643927228 0.500231643921111 0 1.22351018205791e-11 hm5C_site_46162 DeepMRMD:0;iRNA_m5C:1.22351018205791e-11 46163 chr19 55175009 55175009 1 + G T rs11540761 55175006 + 55174986 55175026 41 CCAGGGCTGAGTCTGGGCCCCAGGACCCACATGCAGGCAGG CCAGGGCTGAGTCTGGGCCCCAGTACCCACATGCAGGCAGG < 41bp 0.834823700374731 0.475755721213957 0.73591626 0.31830156 prediction 0.669647400749462 Functional Loss - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55175006 chr19:55175009 nonsynonymous SNV 0.037 2 24 hm5C_associated_SNPs_50811 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.47183252 0 hm5C_site_46163 DeepMRMD:0.47183252;iRNA_m5C:0 46164 chr9 125562678 125562678 1 + A C SKCM 125562674 + 125562654 125562694 41 AACTTGTTGGCCCATGACCACTCCATCTCGCTGGCTGGCTG AACTTGTTGGCCCATGACCACTCCCTCTCGCTGGCTGGCTG < 41bp 0.834822222550838 0.463341529665609 0.9423704 0.15681463 prediction 0.669644445101675 Functional Loss - OR1K1 ENSG00000165204 CDS Human protein_coding chr9:125562674 chr9:125562678 nonsynonymous SNV 0.061 2 25 hm5C_associated_SNPs_50812 0 0 0 0 0 unknown 0.500231620132893 0.500231643911854 0.8847408 0 hm5C_site_46164 DeepMRMD:0.8847408;iRNA_m5C:0 46165 chrX 155232673 155232673 1 + G T LUAD 155232670 + 155232650 155232690 41 CTGCTTGGGAGTCTCTGTCACAGGGGAAGGACAAGGTGAGG CTGCTTGGGAGTCTCTGTCACAGTGGAAGGACAAGGTGAGG < 41bp 0.83481112821731 0.46962973932995 0.91420674 0.839586 prediction 0.66962225643462 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155232670 chrX:155232673 nonsynonymous SNV 0.007 2 24 hm5C_associated_SNPs_50813 0 0 0 0 1 exosome 0.500231643921088 0.500231636860524 0.14924148 1.41211267123964e-08 hm5C_site_46165 DeepMRMD:0.14924148;iRNA_m5C:1.41211267123964e-08 46166 chr1 177199068 177199068 1 + G T LUAD 177199065 + 177199045 177199085 41 GCTTCGGCCGGCGGTGGCCCCATGGACAGCCCTGCTGGCAC GCTTCGGCCGGCGGTGGCCCCATTGACAGCCCTGCTGGCAC < 41bp 0.834809944471594 0.46602275379996 0.84109235 0.32412297 prediction 0.669619888943188 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177199065 chr1:177199068 nonsynonymous SNV 0.579 4 24 hm5C_associated_SNPs_50814 0 0 0 0 0 Nucleus 0.500231643954788 0.500231643426399 0.6821847 1.05677822048733e-09 hm5C_site_46166 DeepMRMD:0.6821847;iRNA_m5C:1.05677822048733e-09 46167 chr6 44116019 44116019 1 + G T LUAD 44116016 + 44115996 44116036 41 CCATTGAGTACTACACAAAGCTGGAGCAGAAGCTGAAGGAA CCATTGAGTACTACACAAAGCTGTAGCAGAAGCTGAAGGAA < 41bp 0.83478512794133 0.481298322616799 0.17159286 0.098430365 prediction 0.66957025588266 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116016 chr6:44116019 stopgain 1.000 1 24 hm5C_associated_SNPs_50815 0 0 1 0 1 Ribosome 0.500235169430006 0.500231650651714 0 7.03755658459926e-06 hm5C_site_46167 DeepMRMD:0;iRNA_m5C:7.03755658459926e-06 46168 chr11 118960758 118960758 1 + G T UCEC 118960755 + 118960735 118960775 41 CAAAATTTGTTGGGAAGACCCTAGAAACCCTGCCAGAGAAG CAAAATTTGTTGGGAAGACCCTATAAACCCTGCCAGAGAAG < 41bp 0.85200056657635 0.517218354834584 0.34894615 0.49109805 prediction 0.669564423483533 Functional Loss - HMBS ENSG00000256269 CDS Human protein_coding chr11:118960755 chr11:118960758 stopgain 0.999 0 24 hm5C_associated_SNPs_50816 0 0 1 0 2 Cytosol 0.50023164391906 0.500231643921092 0 0 hm5C_site_46168 DeepMRMD:0;iRNA_m5C:0 46169 chr11 66191656 66191656 1 + G T OV 66191653 + 66191633 66191673 41 ACCTTACACGCCCCATCAGCCAGGAGGCTGTGCCTTCCTCT ACCTTACACGCCCCATCAGCCAGTAGGCTGTGCCTTCCTCT < 41bp 0.857679878009569 0.522899117774082 0.94315976 0.5567101 prediction 0.669561520470973 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66191653 chr11:66191656 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50817 0 0 0 0 0 unknown 0.500231643920674 0.500231643921092 0.77289932 0 hm5C_site_46169 DeepMRMD:0.77289932;iRNA_m5C:0 46170 chr4 37850231 37850231 1 + G T UCEC 37850228 + 37850208 37850248 41 TTGGCTAGCTTCCTAGCAACCAAGAATTTGTCTTTGTCTCA TTGGCTAGCTTCCTAGCAACCAATAATTTGTCTTTGTCTCA < 41bp 0.835929887391156 0.501150308954664 0.77089214 0.28497142 prediction 0.669559156872985 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37850228 chr4:37850231 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50818 0 0 0 0 2 Nucleus 0.50023164389504 0.500231618791705 0.54178428 5.02066694885173e-08 hm5C_site_46170 DeepMRMD:0.54178428;iRNA_m5C:5.02066694885173e-08 46171 chr1 167095787 167095787 1 + G T LUSC 167095784 + 167095764 167095804 41 CGCCGCGCAGACTCGATGTCCTCGGAGAGCACCTGGGACGC CGCCGCGCAGACTCGATGTCCTCTGAGAGCACCTGGGACGC < 41bp 0.834778389007814 0.461058001377416 0.4014628 0.1938194 prediction 0.669556778015628 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167095784 chr1:167095787 synonymous SNV . 0 24 hm5C_associated_SNPs_50819 0 0 0 0 0 Endoplasmic reticulum 0.500231643918002 0.500231660832218 0 0 hm5C_site_46171 DeepMRMD:0;iRNA_m5C:0 46172 chr7 141765163 141765163 1 + G T COAD 141765160 + 141765140 141765180 41 TGCAGGAGGTGACGGGACAGCGAGGGGTCGTCATCACCCGC TGCAGGAGGTGACGGGACAGCGATGGGTCGTCATCACCCGC < 41bp 0.834752307114899 0.483902440389965 0.93593943 0.29543024 prediction 0.669504614229799 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141765160 chr7:141765163 nonsynonymous SNV 0.799 4 24 hm5C_associated_SNPs_50820 0 0 0 0 1 Cytosol 0.500231636438255 0.500231643921092 0.87187886 0 hm5C_site_46172 DeepMRMD:0.87187886;iRNA_m5C:0 46173 chr4 147560396 147560396 1 + G T CESC 147560393 + 147560373 147560413 41 GGCACTGCACAGCACCTCGCCGGGCTCCTCGGCTCCCATCG GGCACTGCACAGCACCTCGCCGGTCTCCTCGGCTCCCATCG < 41bp 0.834749509430043 0.482811591691722 0.93395746 0.5445409 prediction 0.669499018860086 Functional Loss - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147560393 chr4:147560396 nonsynonymous SNV 0.644 1 24 hm5C_associated_SNPs_50821 0 0 0 0 0 unknown 0.500231643962182 0.500231645154858 0.77883312 0 hm5C_site_46173 DeepMRMD:0.77883312;iRNA_m5C:0 46174 chr3 184295195 184295195 1 + G T BLCA 184295192 + 184295172 184295212 41 GGCAGCAGCCTCACCCTATCCTGGGCACCCCCAGAGCGGCC GGCAGCAGCCTCACCCTATCCTGTGCACCCCCAGAGCGGCC < 41bp 0.863687607018042 0.528939290069799 0.6706873 0.16242936 prediction 0.669496633896487 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184295192 chr3:184295195 nonsynonymous SNV 0.981 5 24 hm5C_associated_SNPs_50822 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921074 0.3413746 3.59712259978551e-14 hm5C_site_46174 DeepMRMD:0.3413746;iRNA_m5C:3.59712259978551e-14 46175 chr20 18296758 18296758 1 + G T UCS 18296755 + 18296735 18296775 41 GTGTGTGGGCACAGCTTCAGCCAGAATTCAACCCTCATCTC GTGTGTGGGCACAGCTTCAGCCATAATTCAACCCTCATCTC < 41bp 0.834742235396847 0.479016391287193 0.26957378 0.13026741 prediction 0.669484470793695 Functional Loss - ZNF133 ENSG00000125846 CDS Human protein_coding chr20:18296755 chr20:18296758 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50823 0 0 1 0 0 Cytosol 0.500230921023134 0.50023164392125 0 0 hm5C_site_46175 DeepMRMD:0;iRNA_m5C:0 46176 chr1 171254520 171254520 1 + G T SARC 171254517 + 171254497 171254537 41 CCAGTTCCGCTTGACTGGCCCAGGAAAATGGGAAGGAGCCA CCAGTTCCGCTTGACTGGCCCAGTAAAATGGGAAGGAGCCA < 41bp 0.858116739094845 0.52346470669139 0.538089 0.18679035 prediction 0.66930406480691 Functional Loss - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171254517 chr1:171254520 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_50824 0 0 0 1 0 Cytosol 0.500231643921092 0.500231643921092 0.0761780000000001 0 hm5C_site_46176 DeepMRMD:0.0761780000000001;iRNA_m5C:0 46177 chr6 26200013 26200013 1 + G T LAML 26200010 + 26199990 26200030 41 CGATATCTTCGAGCGCATCGCTGGCGAGGCTTCCCGCCTGG CGATATCTTCGAGCGCATCGCTGTCGAGGCTTCCCGCCTGG < 41bp 0.848259664293344 0.513638707817355 0.44167152 0.07560837 prediction 0.669241912951979 Functional Loss - HIST1H2BF ENSG00000197846 CDS Human other chr6:26200010 chr6:26200013 nonsynonymous SNV 0.015 2 24 hm5C_associated_SNPs_50825 0 0 1 0 0 exosome 0.500231643832504 0.500231623316321 0 4.10323659494338e-08 hm5C_site_46177 DeepMRMD:0;iRNA_m5C:4.10323659494338e-08 46178 chr12 3649914 3649914 1 + G T UCEC 3649911 + 3649891 3649931 41 GAACCCAGAGGAGATGACCTCGAGAGATTATTACTTCGACT GAACCCAGAGGAGATGACCTCGATAGATTATTACTTCGACT < 41bp 0.834607430413184 0.485497709347507 0.9114224 0.26781586 prediction 0.669214860826368 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3649911 chr12:3649914 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50826 0 0 0 1 1 unknown 0.50023164390679 0.500231644438182 0.8228448 0 hm5C_site_46178 DeepMRMD:0.8228448;iRNA_m5C:0 46179 chr19 746406 746406 1 + G T LUSC 746403 + 746383 746423 41 AGCGAGGCAGGGTCCACGGCCGGGGCGGCAGAGACCCGGGG AGCGAGGCAGGGTCCACGGCCGGTGCGGCAGAGACCCGGGG < 41bp 0.863375709138693 0.528768484459852 0.91181564 0.37734365 prediction 0.66921444935768 Functional Loss - PALM ENSG00000099864 CDS Human protein_coding chr19:746403 chr19:746406 synonymous SNV . 0 24 hm5C_associated_SNPs_50827 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.82363128 0 hm5C_site_46179 DeepMRMD:0.82363128;iRNA_m5C:0 46180 chr19 5778517 5778517 1 + A C rs2305925 5778513 + 5778493 5778533 41 GGGTCCGTTTGGCTGGCCTACAAGACCCCCAAGCTGCTACG GGGTCCGTTTGGCTGGCCTACAAGCCCCCCAAGCTGCTACG < 41bp 0.834599444632944 0.479708385741695 0.22670585 0.16143742 prediction 0.669198889265888 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5778513 chr19:5778517 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_50828 0 0 0 0 0 nucleus 0.500231643921126 0.500231643921092 0 6.79456491070596e-14 hm5C_site_46180 DeepMRMD:0;iRNA_m5C:6.79456491070596e-14 46181 chr16 89289664 89289664 1 + G T UCEC 89289661 + 89289641 89289681 41 ACCTCTACAGAGATGTGATGCTGGAAAACTACGAGAACCTG ACCTCTACAGAGATGTGATGCTGTAAAACTACGAGAACCTG < 41bp 0.840018421163661 0.505445988967353 0.53585076 0.380145 prediction 0.669144864392618 Functional Loss - ZNF778 ENSG00000170100 CDS Human protein_coding chr16:89289661 chr16:89289664 stopgain 0.262 0 24 hm5C_associated_SNPs_50829 0 0 1 0 2 chromatin 0.500231647698287 0.500231785883913 0.07170152 0 hm5C_site_46181 DeepMRMD:0.07170152;iRNA_m5C:0 46182 chr12 54379778 54379778 1 + G T LUAD 54379775 + 54379755 54379795 41 GCCGACTCCAGCCCAGACACCTCGGATAACGAAGCGAAAGG GCCGACTCCAGCCCAGACACCTCTGATAACGAAGCGAAAGG < 41bp 0.834529246255741 0.491912612733521 0.3420972 0.091510534 prediction 0.669058492511481 Functional Loss - HOXC10 ENSG00000180818;ENSG00000273049 CDS Human other chr12:54379775 chr12:54379778 synonymous SNV . 0 24 hm5C_associated_SNPs_50830 0 0 1 0 1 exosome 0.500231643921609 0.500231643794823 0 2.53572274289127e-10 hm5C_site_46182 DeepMRMD:0;iRNA_m5C:2.53572274289127e-10 46183 chr5 74655898 74655898 1 + G T LUAD 74655895 + 74655875 74655915 41 TGTGTGTGGGACCGTAATGGCTGGGGAATTGTCACTTATGG TGTGTGTGGGACCGTAATGGCTGTGGAATTGTCACTTATGG < 41bp 0.852084560299738 0.517557248260079 0.34742588 0.059886575 prediction 0.669054624079317 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74655895 chr5:74655898 nonsynonymous SNV 0.954 4 24 hm5C_associated_SNPs_50831 0 0 1 0 2 Nucleus 0.500231643374686 0.500230535911085 0 2.21492720209326e-06 hm5C_site_46183 DeepMRMD:0;iRNA_m5C:2.21492720209326e-06 46184 chrX 152083700 152083700 1 + G T LUAD 152083697 + 152083677 152083717 41 CCCAGAGAGCTGCCCTCAGGCCGGAGTCGCGCCACATCCTT CCCAGAGAGCTGCCCTCAGGCCGTAGTCGCGCCACATCCTT < 41bp 0.857549202639565 0.523031106585185 0.1709466 0.016597837 prediction 0.66903619210876 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152083697 chrX:152083700 synonymous SNV . 0 24 hm5C_associated_SNPs_50832 0 0 0 0 2 chromatin 0.500231643913888 0.500231387948206 0 5.11931364188811e-07 hm5C_site_46184 DeepMRMD:0;iRNA_m5C:5.11931364188811e-07 46185 chr20 36975018 36975018 1 + G T LUSC 36975015 + 36974995 36975035 41 GCCAACCCCGGCTTGGTCGCCAGGATCACCGACAAGGGACT GCCAACCCCGGCTTGGTCGCCAGTATCACCGACAAGGGACT < 41bp 0.854509461393178 0.519992322633862 0.86077267 0.12338236 prediction 0.669034277518631 Functional Loss - LBP ENSG00000129988 CDS Human protein_coding chr20:36975015 chr20:36975018 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_50833 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.72154534 0 hm5C_site_46185 DeepMRMD:0.72154534;iRNA_m5C:0 46186 chr5 2752838 2752838 1 + G T LUAD 2752835 + 2752815 2752855 41 GTCGAGAACGGGCAGGAGCTCAGGTTGGCGCCGCCGGTGCA GTCGAGAACGGGCAGGAGCTCAGTTTGGCGCCGCCGGTGCA < 41bp 0.834514821499551 0.48605781734972 0.9102709 0.70857316 prediction 0.669029642999101 Functional Loss - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2752835 chr5:2752838 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_50834 0 0 0 0 2 exosome 0.500233034474588 0.500230610011768 0.40339548 4.84892564034389e-06 hm5C_site_46186 DeepMRMD:0.40339548;iRNA_m5C:4.84892564034389e-06 46187 chr3 26751587 26751587 1 + A C STAD 26751583 + 26751563 26751603 41 AATAACCTGAAGGCCAGGGCCAGAATTGCCAACAACCCCTG AATAACCTGAAGGCCAGGGCCAGACTTGCCAACAACCCCTG < 41bp 0.83450520483349 0.452422987537 0.309548 0.3365795 prediction 0.66901040966698 Functional Loss - LRRC3B ENSG00000179796 CDS Human protein_coding chr3:26751583 chr3:26751587 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_50835 0 0 0 0 0 exosome 0.500231643921096 0.500231643921093 0 4.44089209850063e-15 hm5C_site_46187 DeepMRMD:0;iRNA_m5C:4.44089209850063e-15 46188 chrX 70764444 70764444 1 + G T THCA 70764441 + 70764421 70764461 41 TGTACTGTGTTCGCAGTGACCTGGGGAACCTGCTCAAAGCC TGTACTGTGTTCGCAGTGACCTGTGGAACCTGCTCAAAGCC < 41bp 0.851397920085751 0.516923331592832 0.85745406 0.18432203 prediction 0.668949176985838 Functional Loss - OGT ENSG00000147162 CDS Human protein_coding chrX:70764441 chrX:70764444 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50836 0 0 1 0 2 Nucleus 0.500231643856882 0.50023155920584 0.71490812 1.69302084573886e-07 hm5C_site_46188 DeepMRMD:0.71490812;iRNA_m5C:1.69302084573886e-07 46189 chr12 66717817 66717817 1 + G T BRCA 66717814 + 66717794 66717834 41 GGTGATAAAATTTGTTGTACCAGGAATGCATACCTCTCAGA GGTGATAAAATTTGTTGTACCAGTAATGCATACCTCTCAGA < 41bp 0.845033498739883 0.510590826319805 0.7744176 0.09256759 prediction 0.668885344840155 Functional Loss - HELB ENSG00000127311 CDS Human protein_coding chr12:66717814 chr12:66717817 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_50837 0 0 1 2 1 nucleus 0.500231644563924 0.500231643701011 0.5488352 1.72582503843444e-09 hm5C_site_46189 DeepMRMD:0.5488352;iRNA_m5C:1.72582503843444e-09 46190 chr11 59225138 59225138 1 + G T LUSC 59225135 + 59225115 59225155 41 CACTCTGGGGAGGGGCGGAACAAGGCCCTCTCCACGTGCAC CACTCTGGGGAGGGGCGGAACAATGCCCTCTCCACGTGCAC < 41bp 0.865373241416581 0.530956675993016 0.89487654 0.51202357 prediction 0.66883313084713 Functional Loss - OR4D6 ENSG00000166884 CDS Human protein_coding chr11:59225135 chr11:59225138 nonsynonymous SNV 0.879 4 24 hm5C_associated_SNPs_50838 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.76570594 0 hm5C_site_46190 DeepMRMD:0.76570594;iRNA_m5C:0 46191 chr13 53191674 53191674 1 + A C rs9526957 53191670 + 53191650 53191690 41 CGCACTGTTCAGTTGCTCTCCTGGATGGCTTTATGTCTCCG CGCACTGTTCAGTTGCTCTCCTGGCTGGCTTTATGTCTCCG < 41bp 0.834415213438978 0.48488463978459 0.53239584 0.4667854 prediction 0.668830426877956 Functional Loss - HNRNPA1L2 ENSG00000139675 UTR5 Human protein_coding chr13:53191670 chr13:53191674 . . 0 25 hm5C_associated_SNPs_50839 0 0 1 0 0 Ribosome 0.50023165105496 0.500231644078004 0.0647916799999999 1.39539118038101e-08 hm5C_site_46191 DeepMRMD:0.0647916799999999;iRNA_m5C:1.39539118038101e-08 46192 chr11 71548508 71548508 1 + A C UCEC 71548504 + 71548484 71548524 41 GCTCCTGTCGGGACTTTTGCCTTGAAACAGAAATCCATGTT GCTCCTGTCGGGACTTTTGCCTTGCAACAGAAATCCATGTT < 41bp 0.834401656481082 0.462417500009485 0.52543736 0.32816696 prediction 0.668803312962164 Functional Loss - DEFB108B ENSG00000184276 CDS Human protein_coding chr11:71548504 chr11:71548508 nonsynonymous SNV 0.376 1 25 hm5C_associated_SNPs_50840 0 0 0 0 1 unknown 0.500251351024091 0.500234805192622 0.0508747199999999 3.30916629371902e-05 hm5C_site_46192 DeepMRMD:0.0508747199999999;iRNA_m5C:3.30916629371902e-05 46193 chr7 141443384 141443384 1 + G T LUAD 141443381 + 141443361 141443401 41 CCCTGAATCGTGTGCACTTACTTGGGCGAGTGGGTCAGGAC CCCTGAATCGTGTGCACTTACTTTGGCGAGTGGGTCAGGAC < 41bp 0.851756348597408 0.517362198926499 0.36284816 0.22507223 prediction 0.668788299341818 Functional Loss - SSBP1 ENSG00000106028 CDS Human protein_coding chr7:141443381 chr7:141443384 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50841 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643902383 0 3.7419845000386e-11 hm5C_site_46193 DeepMRMD:0;iRNA_m5C:3.7419845000386e-11 46194 chrX 150885865 150885865 1 + G T UCEC 150885862 + 150885842 150885882 41 AATATGACTGCCACCCGACCCAAGAAAATGGTACTGTATGG AATATGACTGCCACCCGACCCAATAAAATGGTACTGTATGG < 41bp 0.834392767118502 0.483285781591464 0.3898481 0.5413209 prediction 0.668785534237003 Functional Loss - FATE1 ENSG00000147378 CDS Human protein_coding chrX:150885862 chrX:150885865 nonsynonymous SNV 0.093 3 24 hm5C_associated_SNPs_50842 0 0 0 0 1 Cytosol 0.500231643921056 0.500231643872581 0 9.69486713131573e-11 hm5C_site_46194 DeepMRMD:0;iRNA_m5C:9.69486713131573e-11 46195 chr2 150061797 150061797 1 + G T UCEC 150061794 + 150061774 150061814 41 AGTTCGGACCGCCCAGCACACAAGGTCAGCATGCTGCTCCT AGTTCGGACCGCCCAGCACACAATGTCAGCATGCTGCTCCT < 41bp 0.864504901743476 0.530121331844624 0.8816941 0.054798186 prediction 0.668767139797706 Functional Loss - LYPD6B ENSG00000150556 CDS Human protein_coding chr2:150061794 chr2:150061797 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50843 0 0 0 0 1 exosome 0.500231643921164 0.500231646035032 0.7633882 0 hm5C_site_46195 DeepMRMD:0.7633882;iRNA_m5C:0 46196 chr7 139086964 139086964 1 + G T UCEC 139086961 + 139086941 139086981 41 AGAAAAGATTAGCAGAAACTCAAGAAGAGATTAGTGCTGAA AGAAAAGATTAGCAGAAACTCAATAAGAGATTAGTGCTGAA < 41bp 0.834377342082272 0.499739465971489 0.53964555 0.18577299 prediction 0.668754684164544 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139086961 chr7:139086964 stopgain 1.000 1 24 hm5C_associated_SNPs_50844 0 0 1 0 2 unknown 0.500231630030375 0.500231648955224 0.0792911000000001 0 hm5C_site_46196 DeepMRMD:0.0792911000000001;iRNA_m5C:0 46197 chr3 49052332 49052332 1 + G T SKCM 49052329 + 49052309 49052349 41 GCCTGCACACCTTGCCCACCCGTGAGGGCCACCATCTCGTG GCCTGCACACCTTGCCCACCCGTTAGGGCCACCATCTCGTG < 41bp 0.834370844090254 0.487439878894969 0.11836326 0.07192165 prediction 0.668741688180508 Functional Loss - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49052329 chr3:49052332 stopgain 0.779 0 24 hm5C_associated_SNPs_50845 0 0 1 0 1 Nucleus 0.500231643924602 0.500231643921111 0 6.98263669107746e-12 hm5C_site_46197 DeepMRMD:0;iRNA_m5C:6.98263669107746e-12 46198 chr1 161480649 161480649 1 + A C rs11810143 161480645 + 161480625 161480665 41 GCCCAGCATGGGCAGCTCTTCACCAATGGGGATCATTGTGG GCCCAGCATGGGCAGCTCTTCACCCATGGGGATCATTGTGG < 41bp 0.834365974504278 0.452438460773078 0.09460801 0.06496176 prediction 0.668731949008556 Functional Loss - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161480645 chr1:161480649 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_50846 0 0 1 0 2 Endoplasmic reticulum 0.500231629528782 0.500231517375658 0 2.24306247353923e-07 hm5C_site_46198 DeepMRMD:0;iRNA_m5C:2.24306247353923e-07 46199 chr19 55591079 55591079 1 + G T LIHC 55591076 + 55591056 55591096 41 AGCACCTGGTGACGTTCTGCCTGGGTGAGGACGATGGCGTG AGCACCTGGTGACGTTCTGCCTGTGTGAGGACGATGGCGTG < 41bp 0.854122240592956 0.519781050702036 0.24390972 0.049769938 prediction 0.668682379781838 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55591076 chr19:55591079 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_50847 0 0 0 0 1 Cytosol 0.500231640050627 0.500231726516352 0 0 hm5C_site_46199 DeepMRMD:0;iRNA_m5C:0 46200 chr16 71417928 71417928 1 + G T COAD 71417925 + 71417905 71417945 41 ATTGGGCCTCTCAGAGATGTCCCGGTAAGCACCTCACCCCC ATTGGGCCTCTCAGAGATGTCCCTGTAAGCACCTCACCCCC < 41bp 0.834340699113035 0.472464291698804 0.49496835 0.16594899 prediction 0.66868139822607 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71417925 chr16:71417928 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_50848 0 0 0 1 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46200 DeepMRMD:0;iRNA_m5C:0 46201 chr7 141740571 141740571 1 + G T LUSC 141740568 + 141740548 141740588 41 AAAAGTCGAGATGGAACTTCCTGGAGACAAAATTGGACTTC AAAAGTCGAGATGGAACTTCCTGTAGACAAAATTGGACTTC < 41bp 0.837917622198013 0.503610491015389 0.7918129 0.40240768 prediction 0.668614262365249 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141740568 chr7:141740571 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_50849 0 0 0 0 2 Cytosol 0.500231647380769 0.500231643921095 0.5836258 6.9193484275587e-09 hm5C_site_46201 DeepMRMD:0.5836258;iRNA_m5C:6.9193484275587e-09 46202 chr5 35873638 35873638 1 + A C rs191457074 35873634 + 35873614 35873654 41 CCTGCAGAGAAAGCTCCAACCGGCAGCAATGTATGAGATTA CCTGCAGAGAAAGCTCCAACCGGCCGCAATGTATGAGATTA < 41bp 0.834279597163704 0.465282824688367 0.2688658 0.16105705 prediction 0.668559194327408 Functional Loss - IL7R ENSG00000168685 CDS Human protein_coding chr5:35873634 chr5:35873638 synonymous SNV . 0 25 hm5C_associated_SNPs_50850 0 0 0 0 1 Endoplasmic reticulum 0.500231643861403 0.500231643924715 0 0 hm5C_site_46202 DeepMRMD:0;iRNA_m5C:0 46203 chr12 31814903 31814903 1 + G T UCEC 31814900 + 31814880 31814920 41 AAGGACTGATGGCTTTGAGTCTAGGTTGGAAAGCACACAGG AAGGACTGATGGCTTTGAGTCTATGTTGGAAAGCACACAGG < 41bp 0.855186187937111 0.520914239841916 0.22091872 0.0699611 prediction 0.668543896190388 Functional Loss - ETFBKMT ENSG00000139160 CDS Human protein_coding chr12:31814900 chr12:31814903 nonsynonymous SNV 0.044 0 24 hm5C_associated_SNPs_50851 0 0 0 0 0 nucleoplasm 0.500231643921091 0.500231643921092 0 0 hm5C_site_46203 DeepMRMD:0;iRNA_m5C:0 46204 chr6 111498515 111498515 1 + A C UCEC 111498511 + 111498491 111498531 41 GTCATTTTGGGACACTATTTCAAGAAGCGCCTTGGACTGGT GTCATTTTGGGACACTATTTCAAGCAGCGCCTTGGACTGGT < 41bp 0.877043113228692 0.542784624915695 0.9049112 0.61025065 prediction 0.668516976625993 Functional Loss - SLC16A10 ENSG00000112394 CDS Human protein_coding chr6:111498511 chr6:111498515 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_50852 0 0 1 0 0 cytosol 0.500231643921058 0.500231643923819 0.5893211 0 hm5C_site_46204 DeepMRMD:0.5893211;iRNA_m5C:0 46205 chr21 48068521 48068521 1 + G T LUSC 48068518 + 48068498 48068538 41 TCTCTTCTGTGCACACTATGCGCGGCCTAGAGCGGTGAGTG TCTCTTCTGTGCACACTATGCGCTGCCTAGAGCGGTGAGTG < 41bp 0.851951500774702 0.517729245591174 0.43893784 0.12625942 prediction 0.668444510367056 Functional Loss - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068518 chr21:48068521 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_50853 0 0 1 0 1 Cytosol 0.500231643920489 0.500226281640088 0 1.07245608016449e-05 hm5C_site_46205 DeepMRMD:0;iRNA_m5C:1.07245608016449e-05 46206 chr3 16261430 16261430 1 + G T GBM 16261427 + 16261407 16261447 41 CCACTTTCAGCTCCACAACACTGGACTTGGGCTCTGTGCAG CCACTTTCAGCTCCACAACACTGTACTTGGGCTCTGTGCAG < 41bp 0.853974231558708 0.519759385854038 0.5355942 0.15951392 prediction 0.66842969140934 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16261427 chr3:16261430 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_50854 0 0 0 0 2 exosome 0.500231643921092 0.500231643919855 0.0711884 2.47468712188947e-12 hm5C_site_46206 DeepMRMD:0.0711884;iRNA_m5C:2.47468712188947e-12 46207 chr1 248525386 248525386 1 + G T LUSC 248525383 + 248525363 248525403 41 CCTCTCCGTTACCCTGTCCTCATGAACCATAGGGTGTGTCT CCTCTCCGTTACCCTGTCCTCATTAACCATAGGGTGTGTCT < 41bp 0.834189714321399 0.483558240478122 0.19164723 0.051401556 prediction 0.668379428642799 Functional Loss - OR2T4 ENSG00000196944 CDS Human protein_coding chr1:248525383 chr1:248525386 nonsynonymous SNV 0.183 1 24 hm5C_associated_SNPs_50855 0 0 0 0 0 unknown 0.500231643921092 0.5002316439211 0 0 hm5C_site_46207 DeepMRMD:0;iRNA_m5C:0 46208 chr19 54515287 54515287 1 + G T HNSC 54515284 + 54515264 54515304 41 AGAGTCAGCCCGGAGCCTCCCCCGGCCCCACGCCTCACCTA AGAGTCAGCCCGGAGCCTCCCCCTGCCCCACGCCTCACCTA < 41bp 0.834179606281615 0.481340119017697 0.08066529 0.023939192 prediction 0.66835921256323 Functional Loss - CACNG6 ENSG00000130433 CDS Human protein_coding chr19:54515284 chr19:54515287 synonymous SNV . 0 24 hm5C_associated_SNPs_50856 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46208 DeepMRMD:0;iRNA_m5C:0 46209 chrX 118893205 118893205 1 + A C rs749627197 118893201 + 118893181 118893221 41 GCAGCGGCGGCCTCACGCCCCTCCACCTGGCGGCCCTTCAG GCAGCGGCGGCCTCACGCCCCTCCCCCTGGCGGCCCTTCAG < 41bp 0.834174811407452 0.462194362505718 0.92155063 0.07783684 prediction 0.668349622814905 Functional Loss - SOWAHD ENSG00000187808 CDS Human protein_coding chrX:118893201 chrX:118893205 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_50857 0 0 0 0 0 exosome 0.500231643921095 0.500231643921544 0.84310126 0 hm5C_site_46209 DeepMRMD:0.84310126;iRNA_m5C:0 46210 chr19 10224730 10224730 1 + G T SARC 10224727 + 10224707 10224747 41 CACCTGCGACCCAAGCACGCCTGGGCCGTGAGCGCTGCCGG CACCTGCGACCCAAGCACGCCTGTGCCGTGAGCGCTGCCGG < 41bp 0.856803229924705 0.522630017911887 0.43503848 0.21620324 prediction 0.668346424025636 Functional Loss - P2RY11;PPAN-P2RY11 ENSG00000130810;ENSG00000243207;ENSG00000244165 CDS Human other chr19:10224727 chr19:10224730 nonsynonymous SNV 0.230 3 24 hm5C_associated_SNPs_50858 0 0 1 0 0 unknown 0.500231643921093 0.500231643877644 0 8.68998206726701e-11 hm5C_site_46210 DeepMRMD:0;iRNA_m5C:8.68998206726701e-11 46211 chr11 74680685 74680685 1 + G T KIRC 74680682 + 74680662 74680702 41 AGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAAT AGCATCTTTCTCGTGGCCCACAGTAAAGATCCTACAGGAAT < 41bp 0.834148359200865 0.495006000107662 0.5445742 0.08209261 prediction 0.66829671840173 Functional Loss - SPCS2 ENSG00000118363 CDS Human protein_coding chr11:74680682 chr11:74680685 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_50859 0 0 0 0 1 Ribosome 0.500231643785011 0.500231643921092 0.0891484 0 hm5C_site_46211 DeepMRMD:0.0891484;iRNA_m5C:0 46212 chr2 128389208 128389208 1 + G T LUSC 128389205 + 128389185 128389225 41 GTACATGGGCGACTACCCTTCTCGGCAGGCCTGGCCCACCC GTACATGGGCGACTACCCTTCTCTGCAGGCCTGGCCCACCC < 41bp 0.834133059457779 0.496559466693641 0.52637315 0.41859826 prediction 0.668266118915559 Functional Loss - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128389205 chr2:128389208 nonsynonymous SNV 0.130 3 24 hm5C_associated_SNPs_50860 0 0 0 0 0 exosome 0.50023164392109 0.50023164392103 0.0527462999999999 1.20126131264442e-13 hm5C_site_46212 DeepMRMD:0.0527462999999999;iRNA_m5C:1.20126131264442e-13 46213 chr11 67256794 67256794 1 + G T UCEC 67256791 + 67256771 67256811 41 CTCCGCAACATCGCGGTGGGCAAGGACCCCCTGGAGGGCCA CTCCGCAACATCGCGGTGGGCAATGACCCCCTGGAGGGCCA < 41bp 0.834125000360722 0.470935178122472 0.44449174 0.16387218 prediction 0.668250000721444 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67256791 chr11:67256794 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_50861 0 0 1 0 1 Ribosome 0.500231644003756 0.500231643921092 0 1.65326863310611e-10 hm5C_site_46213 DeepMRMD:0;iRNA_m5C:1.65326863310611e-10 46214 chrX 70389453 70389453 1 + G T LUAD 70389450 + 70389430 70389470 41 CCTACAGCAACGAGAATGCCCAGGGGTCCTGGAACGGGGAC CCTACAGCAACGAGAATGCCCAGTGGTCCTGGAACGGGGAC < 41bp 0.866035215524392 0.531917100908447 0.93790686 0.35811794 prediction 0.668236229231889 Functional Loss - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70389450 chrX:70389453 nonsynonymous SNV 0.830 1 24 hm5C_associated_SNPs_50862 0 0 0 0 0 exosome 0.500231643921092 0.500231643496812 0.87581372 8.48560555155586e-10 hm5C_site_46214 DeepMRMD:0.87581372;iRNA_m5C:8.48560555155586e-10 46215 chrX 30261111 30261111 1 + G T LUAD 30261108 + 30261088 30261128 41 AAACCAGCAAGATGAAAGTCCTGGAGTTTTTGGCCAAGGTG AAACCAGCAAGATGAAAGTCCTGTAGTTTTTGGCCAAGGTG < 41bp 0.854269221011262 0.52015451173055 0.37877172 0.29427153 prediction 0.668229418561423 Functional Loss - MAGEB4 ENSG00000120289 CDS Human protein_coding chrX:30261108 chrX:30261111 stopgain 0.989 0 24 hm5C_associated_SNPs_50863 0 0 0 0 0 Nucleus 0.500231650338074 0.500231643921088 0 1.28339734395411e-08 hm5C_site_46215 DeepMRMD:0;iRNA_m5C:1.28339734395411e-08 46216 chr17 27380027 27380027 1 + A C UCEC 27380023 + 27380003 27380043 41 TGTCGAGGCAGAGGGTAGAACACCAGTGTCTTTCATCTGAG TGTCGAGGCAGAGGGTAGAACACCCGTGTCTTTCATCTGAG < 41bp 0.834112618885841 0.446885560082602 0.59154093 0.35800916 prediction 0.668225237771681 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27380023 chr17:27380027 nonsynonymous SNV 0.787 1 25 hm5C_associated_SNPs_50864 0 0 0 0 1 cytosol 0.500231645881897 0.500231643602175 0.18308186 4.55944371147154e-09 hm5C_site_46216 DeepMRMD:0.18308186;iRNA_m5C:4.55944371147154e-09 46217 chr2 27803764 27803764 1 + G T UCEC 27803761 + 27803741 27803781 41 GTGCAGATCAGCTCAACAGCCAAGAAGAGCTTACTCTTTCC GTGCAGATCAGCTCAACAGCCAATAAGAGCTTACTCTTTCC < 41bp 0.834081187688221 0.496483487490557 0.1510936 0.35346735 prediction 0.668162375376441 Functional Loss - C2orf16 ENSG00000221843 CDS Human protein_coding chr2:27803761 chr2:27803764 nonsynonymous SNV 0.055 1 24 hm5C_associated_SNPs_50865 0 0 0 0 0 chromatin 0.500231643933728 0.500231647275559 0 0 hm5C_site_46217 DeepMRMD:0;iRNA_m5C:0 46218 chr19 16612013 16612013 1 + G T LUAD 16612010 + 16611990 16612030 41 GAGAGCTGACAGAATCCTCTCTGGGGGTGCACTCGAACTCG GAGAGCTGACAGAATCCTCTCTGTGGGTGCACTCGAACTCG < 41bp 0.834062341548184 0.4817847818078 0.5720386 0.09244406 prediction 0.668124683096369 Functional Loss - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16612010 chr19:16612013 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50866 0 0 1 0 0 Cytosol 0.500231643921091 0.50023164332734 0.1440772 1.1875003202988e-09 hm5C_site_46218 DeepMRMD:0.1440772;iRNA_m5C:1.1875003202988e-09 46219 chr16 11071251 11071251 1 + G T LUAD 11071248 + 11071228 11071268 41 ACGTGTACTCACTGGAGAACCAGGACAAGGTGGGTCCAGCC ACGTGTACTCACTGGAGAACCAGTACAAGGTGGGTCCAGCC < 41bp 0.834047626962468 0.48516015773256 0.8189219 0.91331553 prediction 0.668095253924937 Functional Loss - CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11071248 chr16:11071251 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_50867 0 0 1 0 1 Cytosol 0.500231662713956 0.500231656294504 0 1.28389034959042e-08 hm5C_site_46219 DeepMRMD:0;iRNA_m5C:1.28389034959042e-08 46220 chr22 30824655 30824655 1 + A C UCEC 30824651 + 30824631 30824671 41 CTGGGTGGGTTTGAGCTGGACAGAAGCTTAGAGACAAAGGC CTGGGTGGGTTTGAGCTGGACAGACGCTTAGAGACAAAGGC < 41bp 0.834043144291829 0.48797396717029 0.31602427 0.26437426 prediction 0.668086288583659 Functional Loss - MTFP1 ENSG00000242114;ENSG00000249590 CDS Human other chr22:30824651 chr22:30824655 nonsynonymous SNV 0.032 1 25 hm5C_associated_SNPs_50868 0 0 1 0 0 Ribosome 0.500231644170871 0.500231608867485 0 7.06067722067161e-08 hm5C_site_46220 DeepMRMD:0;iRNA_m5C:7.06067722067161e-08 46221 chr12 111291336 111291336 1 + A C UCEC 111291332 + 111291312 111291352 41 TCAGGAAGATGGTGGAAAGCCGGAAGTCTTTTAAGTTCCGA TCAGGAAGATGGTGGAAAGCCGGACGTCTTTTAAGTTCCGA < 41bp 0.869844520854655 0.535806989882323 0.36842212 0.3700564 prediction 0.668075061944663 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111291332 chr12:111291336 nonsynonymous SNV 0.979 4 25 hm5C_associated_SNPs_50869 0 0 0 0 1 exosome 0.500231643922047 0.500231643928406 0 0 hm5C_site_46221 DeepMRMD:0;iRNA_m5C:0 46222 chr2 27666891 27666891 1 + G T UCEC 27666888 + 27666868 27666908 41 AGCAGCTACTGGATCAAAATCAAGAAATCCGGGCATCACAG AGCAGCTACTGGATCAAAATCAATAAATCCGGGCATCACAG < 41bp 0.854177069496918 0.520169835990363 0.8786644 0.55822414 prediction 0.66801446701311 Functional Loss - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27666888 chr2:27666891 stopgain 0.000 0 24 hm5C_associated_SNPs_50870 0 0 0 0 2 Endoplasmic reticulum 0.500231643921933 0.500231643921111 0.64088052 1.64335212105016e-12 hm5C_site_46222 DeepMRMD:0.64088052;iRNA_m5C:1.64335212105016e-12 46223 chr1 3672089 3672089 1 + G T UCEC 3672086 + 3672066 3672106 41 CGGAGACCTGGAGAGGCACCCAGGACCTGTTCTTGGCCAGG CGGAGACCTGGAGAGGCACCCAGTACCTGTTCTTGGCCAGG < 41bp 0.864873555333985 0.53087066351324 0.8910343 0.18061084 prediction 0.668005783641489 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3672086 chr1:3672089 nonsynonymous SNV 0.005 3 24 hm5C_associated_SNPs_50871 0 0 0 0 2 exosome 0.500231644593249 0.500231643921093 0.7820686 1.34431332732277e-09 hm5C_site_46223 DeepMRMD:0.7820686;iRNA_m5C:1.34431332732277e-09 46224 chr13 52603479 52603479 1 + G T LUSC 52603476 + 52603456 52603496 41 TGCGCTCAGTGGCTGGAAGGCAAGAACTCCCCTGGAGCAGG TGCGCTCAGTGGCTGGAAGGCAATAACTCCCCTGGAGCAGG < 41bp 0.834000157554474 0.492756634179055 0.22213644 0.06042266 prediction 0.668000315108947 Functional Loss - UTP14C ENSG00000253797 CDS Human protein_coding chr13:52603476 chr13:52603479 nonsynonymous SNV 0.418 4 24 hm5C_associated_SNPs_50872 0 0 1 0 0 nucleoplasm 0.500231643921092 0.500231643921093 0 0 hm5C_site_46224 DeepMRMD:0;iRNA_m5C:0 46225 chrX 75649297 75649297 1 + G T LUSC 75649294 + 75649274 75649314 41 CACCTCCGTGCCGCCCACCCCTGGTGGGGGACTGAGCACCT CACCTCCGTGCCGCCCACCCCTGTTGGGGGACTGAGCACCT < 41bp 0.833984364031447 0.476672904224285 0.59842485 0.2396785 prediction 0.667968728062895 Functional Loss - MAGEE1 ENSG00000198934 CDS Human protein_coding chrX:75649294 chrX:75649297 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_50873 0 0 0 0 0 membrane 0.500231468645698 0.500231598780634 0.1968497 0 hm5C_site_46225 DeepMRMD:0.1968497;iRNA_m5C:0 46226 chrX 3002668 3002668 1 + G T PAAD 3002665 + 3002645 3002685 41 GCCCATGAAGGCTGAACGAGCTGGATCCATTATGGTGAAGG GCCCATGAAGGCTGAACGAGCTGTATCCATTATGGTGAAGG < 41bp 0.860758772256491 0.526818787376543 0.35162675 0.16887504 prediction 0.667879969759897 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3002665 chrX:3002668 nonsynonymous SNV 0.525 2 24 hm5C_associated_SNPs_50874 0 0 0 0 1 unknown 0.500231643917879 0.500231643921032 0 0 hm5C_site_46226 DeepMRMD:0;iRNA_m5C:0 46227 chr9 12708116 12708116 1 + G T LUAD 12708113 + 12708093 12708133 41 TTGTTACTGCTCCAGACAACCTGGGATACACTTATGAAATT TTGTTACTGCTCCAGACAACCTGTGATACACTTATGAAATT < 41bp 0.834397276848373 0.500472229298548 0.4769814 0.11848688 prediction 0.667850095099651 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12708113 chr9:12708116 stopgain 0.998 1 24 hm5C_associated_SNPs_50875 0 0 0 0 1 exosome 0.500231645277778 0.500236756310322 0 0 hm5C_site_46227 DeepMRMD:0;iRNA_m5C:0 46228 chr11 4471335 4471335 1 + A C rs139797177 4471331 + 4471311 4471351 41 GGTGCCATCTTAGCCTTCTACACAACTGTGGTCATCTCTTC GGTGCCATCTTAGCCTTCTACACACCTGTGGTCATCTCTTC < 41bp 0.833911978012823 0.480002264406993 0.15600812 0.08661246 prediction 0.667823956025646 Functional Loss - OR52K2 ENSG00000181963 CDS Human protein_coding chr11:4471331 chr11:4471335 nonsynonymous SNV 0.840 0 25 hm5C_associated_SNPs_50876 0 0 0 0 0 exosome 0.500231643921092 0.500231643921095 0 0 hm5C_site_46228 DeepMRMD:0;iRNA_m5C:0 46229 chr22 50955905 50955905 1 + G T LUSC 50955902 + 50955882 50955922 41 CCAGGCCCTTGATTTCATCTCTGGAAAGAGGTGAGTTCTGC CCAGGCCCTTGATTTCATCTCTGTAAAGAGGTGAGTTCTGC < 41bp 0.847862161835152 0.513969714099049 0.09492287 0.09309426 prediction 0.667784895472206 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50955902 chr22:50955905 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_50877 0 0 1 0 2 Cytosol 0.500231643924791 0.500231643922497 0 4.5869974485413e-12 hm5C_site_46229 DeepMRMD:0;iRNA_m5C:4.5869974485413e-12 46230 chr5 79616816 79616816 1 + A C COAD 79616812 + 79616792 79616832 41 AAGCAGAACACTGGAGTAAACAACATACTGAGCTCAGTAAA AAGCAGAACACTGGAGTAAACAACCTACTGAGCTCAGTAAA < 41bp 0.833890000635887 0.494253329213804 0.06747988 0.06287432 prediction 0.667780001271774 Functional Loss - SPZ1 ENSG00000164299 CDS Human protein_coding chr5:79616812 chr5:79616816 nonsynonymous SNV 0.035 3 25 hm5C_associated_SNPs_50878 0 0 0 0 0 unknown 0.500231643922256 0.500231643921092 0 2.3276935934291e-12 hm5C_site_46230 DeepMRMD:0;iRNA_m5C:2.3276935934291e-12 46231 chr21 45811422 45811422 1 + G T CESC 45811419 + 45811399 45811439 41 CCCAGGTGCTGCGGGAGCTGCTGGGGGACTTCACGCAGCCG CCCAGGTGCTGCGGGAGCTGCTGTGGGACTTCACGCAGCCG < 41bp 0.833885252586164 0.478361889385593 0.9166641 0.8663285 prediction 0.667770505172327 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45811419 chr21:45811422 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_50879 0 0 0 0 1 Ribosome 0.500231643944626 0.500231643944801 0.1006712 0 hm5C_site_46231 DeepMRMD:0.1006712;iRNA_m5C:0 46232 chr15 51993418 51993418 1 + G T LUAD 51993415 + 51993395 51993435 41 AAAAGATGATAACTCCAACCCAGGAGGAAAGACAGATGAAC AAAAGATGATAACTCCAACCCAGTAGGAAAGACAGATGAAC < 41bp 0.840249599754489 0.506407994545006 0.8411559 0.7316545 prediction 0.667683210418967 Functional Loss - SCG3 ENSG00000104112 CDS Human protein_coding chr15:51993415 chr15:51993418 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_50880 0 0 1 0 1 nucleolus 0.500231643962311 0.500231643921092 0.2190028 8.24371682028868e-11 hm5C_site_46232 DeepMRMD:0.2190028;iRNA_m5C:8.24371682028868e-11 46233 chr4 154544192 154544192 1 + G T UCEC 154544189 + 154544169 154544209 41 AGCAGCACCAGCAGCTCCGACGGGGATAAGAAGCCCATGGT AGCAGCACCAGCAGCTCCGACGGTGATAAGAAGCCCATGGT < 41bp 0.853034071111727 0.519211240307842 0.90877867 0.5755056 prediction 0.667645661607768 Functional Loss - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154544189 chr4:154544192 synonymous SNV . 0 24 hm5C_associated_SNPs_50881 0 0 0 0 1 Nucleus 0.500231643920366 0.500231642460742 0.66654614 2.91924751039119e-09 hm5C_site_46233 DeepMRMD:0.66654614;iRNA_m5C:2.91924751039119e-09 46234 chr19 54401741 54401741 1 + G T LUAD 54401738 + 54401718 54401758 41 TCTGATGAGCTCTACGCCATCAAGATCTTGAAAAAGGACGT TCTGATGAGCTCTACGCCATCAATATCTTGAAAAAGGACGT < 41bp 0.833815780201219 0.478095727887759 0.38823003 0.22167078 prediction 0.667631560402438 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54401738 chr19:54401741 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_50882 0 0 0 0 1 Cytosol 0.500231643921093 0.500231643921092 0 1.11022302462516e-15 hm5C_site_46234 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 46235 chr1 152760006 152760006 1 + G T rs146130217 152760003 + 152759983 152760023 41 TCTGGGGGAGGTGGCTGCTGCCTGAGCCACCACAGGCACCA TCTGGGGGAGGTGGCTGCTGCCTTAGCCACCACAGGCACCA < 41bp 0.833772033323202 0.481728379653217 0.1749911 0.044455767 prediction 0.667544066646403 Functional Loss - LCE1E ENSG00000186226 CDS Human protein_coding chr1:152760003 chr1:152760006 synonymous SNV . 0 24 hm5C_associated_SNPs_50883 0 0 0 0 0 unknown 0.500231643921089 0.500231643926947 0 0 hm5C_site_46235 DeepMRMD:0;iRNA_m5C:0 46236 chr1 152760007 152760007 1 + A C COAD 152760003 + 152759983 152760023 41 TCTGGGGGAGGTGGCTGCTGCCTGAGCCACCACAGGCACCA TCTGGGGGAGGTGGCTGCTGCCTGCGCCACCACAGGCACCA < 41bp 0.833772033323202 0.482442124363521 0.1749911 0.08107272 prediction 0.667544066646403 Functional Loss - LCE1E ENSG00000186226 CDS Human protein_coding chr1:152760003 chr1:152760007 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_50884 0 0 0 0 0 unknown 0.500231643921089 0.500231643918836 0 4.50506298932396e-12 hm5C_site_46236 DeepMRMD:0;iRNA_m5C:4.50506298932396e-12 46237 chr19 58563890 58563890 1 + A C rs373543521 58563886 + 58563866 58563906 41 GCTGATTCTGGATGCAGTGGCAGCAGCCCCAGCACTCCCCG GCTGATTCTGGATGCAGTGGCAGCCGCCCCAGCACTCCCCG < 41bp 0.833771035239142 0.475155355113421 0.87574816 0.87129545 prediction 0.667542070478285 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58563886 chr19:58563890 synonymous SNV . 0 25 hm5C_associated_SNPs_50885 0 0 0 0 1 exosome 0.50021544498694 0.500230858556292 0.00890542000000005 0 hm5C_site_46237 DeepMRMD:0.00890542000000005;iRNA_m5C:0 46238 chr5 140744069 140744069 1 + G T LUAD 140744066 + 140744046 140744086 41 AGGACCTTGGGCTGGAGCCCCAGGAGCTGGCGGAGCGCGGA AGGACCTTGGGCTGGAGCCCCAGTAGCTGGCGGAGCGCGGA < 41bp 0.833751546504529 0.482783756605609 0.89469534 0.31750783 prediction 0.667503093009058 Functional Loss - PCDHGA5 ENSG00000253485 CDS Human protein_coding chr5:140744066 chr5:140744069 stopgain 0.914 0 24 hm5C_associated_SNPs_50886 0 0 0 0 0 exosome 0.500231643924392 0.50023164392051 0.78939068 7.76423370041357e-12 hm5C_site_46238 DeepMRMD:0.78939068;iRNA_m5C:7.76423370041357e-12 46239 chr19 48254807 48254807 1 + A C LUSC 48254803 + 48254783 48254823 41 TGGACAGGCCGTTGGTTGGCCAGGATGAGTTTTTCCTGGAG TGGACAGGCCGTTGGTTGGCCAGGCTGAGTTTTTCCTGGAG < 41bp 0.833733284942079 0.463911902314273 0.8085935 0.8125342 prediction 0.667466569884157 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254803 chr19:48254807 nonsynonymous SNV 0.806 4 25 hm5C_associated_SNPs_50887 0 0 1 0 1 unknown 0.500234567142377 0.500231644560566 0 5.84516362245324e-06 hm5C_site_46239 DeepMRMD:0;iRNA_m5C:5.84516362245324e-06 46240 chr1 28862433 28862433 1 + G T LUAD 28862430 + 28862410 28862450 41 TGCTGAAATCCAGGGGAAGCCGGGGCCACGTGAGATTCCAG TGCTGAAATCCAGGGGAAGCCGGTGCCACGTGAGATTCCAG < 41bp 0.862808225079881 0.529104034307159 0.92400885 0.89286757 prediction 0.667408381545444 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862430 chr1:28862433 nonsynonymous SNV 0.093 3 24 hm5C_associated_SNPs_50888 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.0622825599999999 0 hm5C_site_46240 DeepMRMD:0.0622825599999999;iRNA_m5C:0 46241 chr18 13826127 13826127 1 + G T LUAD 13826124 + 13826104 13826144 41 ATTGACAATGTGTTTGACTCCATGATCTGCATTTCCGTGGT ATTGACAATGTGTTTGACTCCATTATCTGCATTTCCGTGGT < 41bp 0.833701059353964 0.484991134144339 0.06754732 0.03363654 prediction 0.667402118707929 Functional Loss - MC5R ENSG00000176136 CDS Human protein_coding chr18:13826124 chr18:13826127 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_50889 0 0 0 0 0 unknown 0.50023400890117 0.50023674942309 0 0 hm5C_site_46241 DeepMRMD:0;iRNA_m5C:0 46242 chr12 12588624 12588624 1 + G T BLCA 12588621 + 12588601 12588641 41 TGGAGAAACTGGACTCTCAGCAGGTGTTGCAGCTCTGCCTC TGGAGAAACTGGACTCTCAGCAGTTGTTGCAGCTCTGCCTC < 41bp 0.87060253950747 0.536916718366991 0.9308145 0.53661865 prediction 0.667371642280958 Functional Loss - BORCS5 ENSG00000165714 CDS Human protein_coding chr12:12588621 chr12:12588624 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50890 0 0 1 0 2 insoluble cytoplasm 0.500231737550601 0.500231643999991 0.7883917 1.8710122029475e-07 hm5C_site_46242 DeepMRMD:0.7883917;iRNA_m5C:1.8710122029475e-07 46243 chr10 134259223 134259223 1 + G T SARC 134259220 + 134259200 134259240 41 CGTGTCCATGGGCCCAGTGCCTGGCGTGTCCTCCCTGGGAG CGTGTCCATGGGCCCAGTGCCTGTCGTGTCCTCCCTGGGAG < 41bp 0.833684626606876 0.475529664326818 0.5187299 0.062284827 prediction 0.667369253213751 Functional Loss - C10orf91 ENSG00000180066 CDS Human lincRNA chr10:134259220 chr10:134259223 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50891 0 0 0 0 1 unknown 0.500231643983218 0.500231643434312 0.0374597999999999 1.09781184143287e-09 hm5C_site_46243 DeepMRMD:0.0374597999999999;iRNA_m5C:1.09781184143287e-09 46244 chr4 147561325 147561325 1 + G T BLCA 147561322 + 147561302 147561342 41 AGCTGCTGGAGCACCTGAGTCCCGGGCTGGCCCTGGGCGCT AGCTGCTGGAGCACCTGAGTCCCTGGCTGGCCCTGGGCGCT < 41bp 0.8575378705549 0.523867972037151 0.76856166 0.64202404 prediction 0.667339797035497 Functional Loss - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147561322 chr4:147561325 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50892 0 0 0 0 0 unknown 0.500231643920804 0.500231643921947 0.25307524 0 hm5C_site_46244 DeepMRMD:0.25307524;iRNA_m5C:0 46245 chr1 26885394 26885394 1 + G T BLCA 26885391 + 26885371 26885411 41 GATGGAAGACGACGGCAAGCCTCGTGCCCCGCAGGCACCCC GATGGAAGACGACGGCAAGCCTCTTGCCCCGCAGGCACCCC < 41bp 0.833665032171389 0.483462876940944 0.13345301 0.040768504 prediction 0.667330064342779 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26885391 chr1:26885394 nonsynonymous SNV 0.357 0 24 hm5C_associated_SNPs_50893 0 0 1 0 2 Ribosome 0.500232461321554 0.500231876593387 0 1.16945633421572e-06 hm5C_site_46245 DeepMRMD:0;iRNA_m5C:1.16945633421572e-06 46246 chr19 42090761 42090761 1 + A C LUSC 42090757 + 42090737 42090777 41 GGTTGGGAGTCTTCTGGTGGCTGCACTTGTGTGTTTCCTGC GGTTGGGAGTCTTCTGGTGGCTGCCCTTGTGTGTTTCCTGC < 41bp 0.833655828107764 0.453463549741957 0.26703268 0.096741766 prediction 0.667311656215528 Functional Loss - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42090757 chr19:42090761 synonymous SNV . 0 25 hm5C_associated_SNPs_50894 0 0 0 0 3 exosome 0.49979714712235 0.500231643920178 0 0 hm5C_site_46246 DeepMRMD:0;iRNA_m5C:0 46247 chr21 44441505 44441505 1 + G T LUAD 44441502 + 44441482 44441522 41 GGCGTCCTGCCAAAGCATGCCACGAACGTGATGCGGTCCTG GGCGTCCTGCCAAAGCATGCCACTAACGTGATGCGGTCCTG < 41bp 0.858270176145873 0.524678280999305 0.09306109 0.036440164 prediction 0.667183790293136 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44441502 chr21:44441505 synonymous SNV . 0 24 hm5C_associated_SNPs_50895 0 0 0 0 2 Ribosome 0.500240790422058 0.500231701633949 0 1.81775762173597e-05 hm5C_site_46247 DeepMRMD:0;iRNA_m5C:1.81775762173597e-05 46248 chr7 100773706 100773706 1 + G T UCEC 100773703 + 100773683 100773723 41 CCTCTCTGTCCCGGTGCAGACAAGGGCATGGCCCCCGCCCT CCTCTCTGTCCCGGTGCAGACAATGGCATGGCCCCCGCCCT < 41bp 0.833585115574081 0.468817508332533 0.92327046 0.24716678 prediction 0.667170231148162 Functional Loss - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100773703 chr7:100773706 nonsynonymous SNV 0.110 1 24 hm5C_associated_SNPs_50896 0 0 1 0 1 Ribosome 0.500231643921092 0.500231645491888 0.84654092 0 hm5C_site_46248 DeepMRMD:0.84654092;iRNA_m5C:0 46249 chr17 55065102 55065102 1 + G T UCEC 55065099 + 55065079 55065119 41 TGTGGATAATCCCGTGGGCACTGGGTTCAGTTATGTGAATG TGTGGATAATCCCGTGGGCACTGTGTTCAGTTATGTGAATG < 41bp 0.857090400321567 0.523562218971134 0.2578755 0.122780114 prediction 0.667056362700866 Functional Loss - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55065099 chr17:55065102 nonsynonymous SNV 0.686 5 24 hm5C_associated_SNPs_50897 0 0 1 0 1 Ribosome 0.500231643921092 0.500231634454022 0 1.89341400336218e-08 hm5C_site_46249 DeepMRMD:0;iRNA_m5C:1.89341400336218e-08 46250 chr19 42399553 42399553 1 + G T UCEC 42399550 + 42399530 42399570 41 TGTCCCTGGACAGCCCAGACCGGGAACCAGGTGAGAGTTTC TGTCCCTGGACAGCCCAGACCGGTAACCAGGTGAGAGTTTC < 41bp 0.833502556191042 0.489955390331562 0.9157411 0.5597479 prediction 0.667005112382083 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42399550 chr19:42399553 stopgain 0.983 0 24 hm5C_associated_SNPs_50898 0 0 1 0 1 Cytosol 0.500231646741276 0.500231646320101 0.7119864 8.42350633689648e-10 hm5C_site_46250 DeepMRMD:0.7119864;iRNA_m5C:8.42350633689648e-10 46251 chr4 57397050 57397050 1 + A C rs28550555 57397046 + 57397026 57397066 41 GAGGAGGTCAGGGAGCAAGACCAGAGAGACGAGTCCGAGGA GAGGAGGTCAGGGAGCAAGACCAGCGAGACGAGTCCGAGGA < 41bp 0.833498434955442 0.476483175162347 0.38391733 0.49947333 prediction 0.666996869910884 Functional Loss - THEGL ENSG00000249693 CDS Human protein_coding chr4:57397046 chr4:57397050 synonymous SNV . 0 25 hm5C_associated_SNPs_50899 0 0 0 0 0 cytosol 0.500231643677047 0.500231634156741 0 1.9040611753951e-08 hm5C_site_46251 DeepMRMD:0;iRNA_m5C:1.9040611753951e-08 46252 chr19 6921762 6921762 1 + G T SARC 6921759 + 6921739 6921779 41 GAGAGGCCCATCTGTGTTTCCTGGAGCACTGATGTGAAGGG GAGAGGCCCATCTGTGTTTCCTGTAGCACTGATGTGAAGGG < 41bp 0.833497369862687 0.481205470830415 0.47345155 0.33882976 prediction 0.666994739725374 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6921759 chr19:6921762 nonsynonymous SNV 0.118 4 24 hm5C_associated_SNPs_50900 0 0 0 0 1 exosome 0.502454669281008 0.500231643921093 0 0.00444605071983095 hm5C_site_46252 DeepMRMD:0;iRNA_m5C:0.00444605071983095 46253 chr12 113822701 113822701 1 + G T LUAD 113822698 + 113822678 113822718 41 GTGGACTACAAGGCGTTCATCCCGGGTGGGCCCAGCCCCGG GTGGACTACAAGGCGTTCATCCCTGGTGGGCCCAGCCCCGG < 41bp 0.833495565455201 0.466503064492383 0.89009696 0.2799474 prediction 0.666991130910402 Functional Loss - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113822698 chr12:113822701 synonymous SNV . 0 24 hm5C_associated_SNPs_50901 0 0 1 0 2 Nucleus 0.500231643451654 0.500231644253541 0.78019392 0 hm5C_site_46253 DeepMRMD:0.78019392;iRNA_m5C:0 46254 chr1 161697300 161697300 1 + G T UCS 161697297 + 161697277 161697317 41 CCGACGTGGACCTTCTGCTCCGAGAAATGCAGCTGCTCAAA CCGACGTGGACCTTCTGCTCCGATAAATGCAGCTGCTCAAA < 41bp 0.833445541119191 0.481382670072223 0.9100313 0.33715576 prediction 0.666891082238383 Functional Loss - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161697297 chr1:161697300 stopgain 0.906 1 24 hm5C_associated_SNPs_50902 0 0 0 0 0 Endoplasmic reticulum 0.500231645037663 0.500231643921078 0.8200626 2.23317098146936e-09 hm5C_site_46254 DeepMRMD:0.8200626;iRNA_m5C:2.23317098146936e-09 46255 chr6 31785409 31785409 1 + G T UCEC 31785406 + 31785386 31785426 41 GGCCTGGGGGCTTCGGGGCTCAGGGTCCCAAGGGAGGGTCT GGCCTGGGGGCTTCGGGGCTCAGTGTCCCAAGGGAGGGTCT < 41bp 0.833428164456856 0.495465027645892 0.9329817 0.39040488 prediction 0.666856328913713 Functional Loss - HSPA1A ENSG00000204389 CDS Human protein_coding chr6:31785406 chr6:31785409 nonsynonymous SNV 0.821 1 24 hm5C_associated_SNPs_50903 0 0 1 0 0 Ribosome 0.500231643921092 0.500231642873598 0.8659634 2.09498862702162e-09 hm5C_site_46255 DeepMRMD:0.8659634;iRNA_m5C:2.09498862702162e-09 46256 chr10 134013933 134013933 1 + G T READ 134013930 + 134013910 134013950 41 TCACACTACTGGAGCAAGAACTGGGCCAAGGCCGCAGCCTT TCACACTACTGGAGCAAGAACTGTGCCAAGGCCGCAGCCTT < 41bp 0.833416303646688 0.458504971320296 0.7235902 0.1917997 prediction 0.666832607293377 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134013930 chr10:134013933 nonsynonymous SNV 0.988 5 24 hm5C_associated_SNPs_50904 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643936792 0.4471804 0 hm5C_site_46256 DeepMRMD:0.4471804;iRNA_m5C:0 46257 chr19 55494426 55494426 1 + G T STAD 55494423 + 55494403 55494443 41 CGCTGCGGACGCTGAGCCTCCTGGCCGCGCAGGGCCTGTGG CGCTGCGGACGCTGAGCCTCCTGTCCGCGCAGGGCCTGTGG < 41bp 0.833409828561626 0.473386776694142 0.5817405 0.26489115 prediction 0.666819657123253 Functional Loss - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55494423 chr19:55494426 nonsynonymous SNV 0.014 4 24 hm5C_associated_SNPs_50905 0 0 0 0 0 Cytosol 0.500231643997307 0.500231603001567 0.163481 8.19914811600597e-08 hm5C_site_46257 DeepMRMD:0.163481;iRNA_m5C:8.19914811600597e-08 46258 chr4 619560 619560 1 + G T rs79826315 619557 + 619537 619577 41 CGCCGGACTGCGACAGCCTCCGGGACCTCTGCCAGGTGGAG CGCCGGACTGCGACAGCCTCCGGTACCTCTGCCAGGTGGAG < 41bp 0.856334817842685 0.522947602197527 0.8828597 0.8040231 prediction 0.666774431290315 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:619557 chr4:619560 nonsynonymous SNV 0.584 1 24 hm5C_associated_SNPs_50906 4 0 0 0 0 Nucleus 0.500231644001714 0.500231644888565 0.1576732 0 hm5C_site_46258 DeepMRMD:0.1576732;iRNA_m5C:0 not specified not specified 46259 chr14 74825410 74825410 1 + G T LUSC 74825407 + 74825387 74825427 41 GTGGCAGGGATGGCCGGATGCTGGTGATGGACATGATCGCT GTGGCAGGGATGGCCGGATGCTGTTGATGGACATGATCGCT < 41bp 0.833385152974338 0.480963801776312 0.50628054 0.22587514 prediction 0.666770305948675 Functional Loss - VRTN ENSG00000133980 CDS Human protein_coding chr14:74825407 chr14:74825410 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_50907 0 0 0 0 0 unknown 0.50023269109928 0.500300442557004 0.01256108 0 hm5C_site_46259 DeepMRMD:0.01256108;iRNA_m5C:0 46260 chrX 26211971 26211971 1 + G T LUAD 26211968 + 26211948 26211988 41 ACAGGCCACAGCCATCATGCCTCGGGGTCACAAGAGTAAGC ACAGGCCACAGCCATCATGCCTCTGGGTCACAAGAGTAAGC < 41bp 0.842274594839962 0.50890295662317 0.081608355 0.016426265 prediction 0.666743276433584 Functional Loss - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26211968 chrX:26211971 nonsynonymous SNV 0.973 3 24 hm5C_associated_SNPs_50908 0 0 0 0 1 unknown 0.500231643919856 0.500231262144499 0 7.63550713767103e-07 hm5C_site_46260 DeepMRMD:0;iRNA_m5C:7.63550713767103e-07 46261 chr19 10363251 10363251 1 + A C rs113197610 10363247 + 10363227 10363267 41 GTCTCCCGGAGCCCGTGCTGCGCAAAGTCGAGCTCCCGGTA GTCTCCCGGAGCCCGTGCTGCGCACAGTCGAGCTCCCGGTA < 41bp 0.833361838502661 0.450473560468483 0.38847008 0.1723178 prediction 0.666723677005322 Functional Loss - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10363247 chr19:10363251 nonsynonymous SNV 0.137 0 25 hm5C_associated_SNPs_50909 0 0 1 0 1 Cytosol 0.500231643921093 0.500231643579581 0 6.83023415604112e-10 hm5C_site_46261 DeepMRMD:0;iRNA_m5C:6.83023415604112e-10 46262 chr22 18979405 18979405 1 + A C rs1210635 18979401 + 18979381 18979421 41 CAGCGAGGGGGCTCCACTTCCGAGACCCCTGGAGAGGCCCG CAGCGAGGGGGCTCCACTTCCGAGCCCCCTGGAGAGGCCCG < 41bp 0.835654681254142 0.502344343139245 0.88342893 0.86797094 prediction 0.666620676229795 Functional Loss - DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18979401 chr22:18979405 . . 0 25 hm5C_associated_SNPs_50910 0 0 0 0 1 unknown 0.500231643920969 0.50023164392601 0.0309159800000001 0 hm5C_site_46262 DeepMRMD:0.0309159800000001;iRNA_m5C:0 46263 chr3 14708972 14708972 1 + G T UCEC 14708969 + 14708949 14708989 41 TTGGGTATTTTGCCTTTGCCCGAGACAAAGAGTTGAGAAAC TTGGGTATTTTGCCTTTGCCCGATACAAAGAGTTGAGAAAC < 41bp 0.841263277092999 0.507985765843459 0.90287757 0.63706905 prediction 0.66655502249908 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14708969 chr3:14708972 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_50911 0 0 1 0 2 Cytosol 0.500621350858846 0.500231643916814 0.53161704 0.000779413884063107 hm5C_site_46263 DeepMRMD:0.53161704;iRNA_m5C:0.000779413884063107 46264 chr4 169842780 169842780 1 + G T LUAD 169842777 + 169842757 169842797 41 AAGATGCTGGTGCGTGAGAACGGGGTGCACTCTCTGATCAT AAGATGCTGGTGCGTGAGAACGGTGTGCACTCTCTGATCAT < 41bp 0.833240875450989 0.491453186789184 0.9309131 0.4536246 prediction 0.666481750901977 Functional Loss - PALLD ENSG00000129116 CDS Human protein_coding chr4:169842777 chr4:169842780 synonymous SNV . 0 24 hm5C_associated_SNPs_50912 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643719279 0.8618262 4.03627353762204e-10 hm5C_site_46264 DeepMRMD:0.8618262;iRNA_m5C:4.03627353762204e-10 46265 chr5 36680558 36680558 1 + G T LUAD 36680555 + 36680535 36680575 41 AGAACAATGGCGTGGACAAGCGCGTCACCAGATTCGTGCTC AGAACAATGGCGTGGACAAGCGCTTCACCAGATTCGTGCTC < 41bp 0.833224408980855 0.487950061625643 0.06981459 0.025521278 prediction 0.666448817961709 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36680555 chr5:36680558 nonsynonymous SNV 0.412 3 24 hm5C_associated_SNPs_50913 0 0 0 0 1 Endoplasmic reticulum 0.50023164401189 0.500231643921177 0 1.8142576330149e-10 hm5C_site_46265 DeepMRMD:0;iRNA_m5C:1.8142576330149e-10 46266 chr20 62724238 62724238 1 + G T LUAD 62724235 + 62724215 62724255 41 CTCGGGCTCAAGGTCACCATCGTGGGGCTCTACCTGGCCGT CTCGGGCTCAAGGTCACCATCGTTGGGCTCTACCTGGCCGT < 41bp 0.833201343156317 0.465163531793243 0.95097566 0.21740529 prediction 0.666402686312634 Functional Loss - OPRL1 ENSG00000125510 CDS Human protein_coding chr20:62724235 chr20:62724238 synonymous SNV . 0 24 hm5C_associated_SNPs_50914 0 0 0 0 2 exosome 0.500231643921092 0.500231643971932 0.90195132 0 hm5C_site_46266 DeepMRMD:0.90195132;iRNA_m5C:0 46267 chr12 5154477 5154477 1 + G T UCEC 5154474 + 5154454 5154494 41 CCAGGGGGTGGAGGAGGCGGCCAGAATGGGCAGCAGGCCAT CCAGGGGGTGGAGGAGGCGGCCATAATGGGCAGCAGGCCAT < 41bp 0.833191357664209 0.480348558224811 0.8890592 0.8928702 prediction 0.666382715328417 Functional Loss - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5154474 chr12:5154477 nonsynonymous SNV 0.943 2 24 hm5C_associated_SNPs_50915 0 0 0 0 0 exosome 0.50023164401256 0.500231643921092 0 1.82934556391956e-10 hm5C_site_46267 DeepMRMD:0;iRNA_m5C:1.82934556391956e-10 46268 chr11 43876813 43876813 1 + A C rs11037683 43876809 + 43876789 43876829 41 GAAGAACTAAGCATTGATAACTGCATTGTAACTTGGCCAGA GAAGAACTAAGCATTGATAACTGCCTTGTAACTTGGCCAGA < 41bp 0.833169130658318 0.486079484964645 0.69050753 0.6044192 prediction 0.666338261316637 Functional Loss - HSD17B12 ENSG00000246250 ncRNA_intronic Human antisense chr11:43876809 chr11:43876813 . . 0 25 hm5C_associated_SNPs_50916 0 0 1 0 0 Ribosome 0.500242571512597 0.500232358427898 0.17217666 2.04261693974583e-05 hm5C_site_46268 DeepMRMD:0.17217666;iRNA_m5C:2.04261693974583e-05 46269 chr14 24030568 24030568 1 + C A BLCA 24030571 - 24030551 24030591 41 ATGTCCAGCATCCTCCCCATCTGGACCCCTCCCCAGGAGGT ATGTCCAGCATCCTCCCCATCTGTACCCCTCCCCAGGAGGT < 41bp 0.860429390716382 0.527265675647177 0.5118244 0.0915257 prediction 0.666327430138411 Functional Loss - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24030571 chr14:24030568 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_50917 0 0 0 0 1 Nucleus 0.50023165018375 0.500231643921092 0.0236487999999999 1.25253158955729e-08 hm5C_site_46269 DeepMRMD:0.0236487999999999;iRNA_m5C:1.25253158955729e-08 46270 chr8 67808441 67808441 1 + G T UCEC 67808438 + 67808418 67808458 41 AAGCATCACAGTGTACATCCCAGGAAAGAAGTTTGGGGAGG AAGCATCACAGTGTACATCCCAGTAAAGAAGTTTGGGGAGG < 41bp 0.836555141633159 0.503396555183323 0.51437044 0.16417354 prediction 0.666317172899672 Functional Loss - MCMDC2 ENSG00000178460 CDS Human protein_coding chr8:67808438 chr8:67808441 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50918 0 0 0 0 1 nucleoplasm 0.500231632822129 0.500231643921092 0.02874088 0 hm5C_site_46270 DeepMRMD:0.02874088;iRNA_m5C:0 46271 chr1 247752190 247752190 1 + G T LUAD 247752187 + 247752167 247752207 41 TGCCCTTCTGTGGGCATCGCCAAGTGGATCATTTCATCTGC TGCCCTTCTGTGGGCATCGCCAATTGGATCATTTCATCTGC < 41bp 0.833136446921804 0.481608097494041 0.915066 0.23921686 prediction 0.666272893843608 Functional Loss - OR2G2 ENSG00000177489 CDS Human protein_coding chr1:247752187 chr1:247752190 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_50919 0 0 0 0 0 unknown 0.500231643302556 0.500231643702059 0.830132 0 hm5C_site_46271 DeepMRMD:0.830132;iRNA_m5C:0 46272 chr2 216214334 216214334 1 + G T SKCM 216214331 + 216214311 216214351 41 TGATTGAGGCCTGCGACGAACTGGGAATCATCCTCGCTCAT TGATTGAGGCCTGCGACGAACTGTGAATCATCCTCGCTCAT < 41bp 0.833117225110258 0.473078895860954 0.8916553 0.49828285 prediction 0.666234450220516 Functional Loss - ATIC ENSG00000138363 CDS Human protein_coding chr2:216214331 chr2:216214334 stopgain 0.976 1 24 hm5C_associated_SNPs_50920 0 0 1 0 0 chromatin 0.500231692494568 0.500233226117332 0.7833106 0 hm5C_site_46272 DeepMRMD:0.7833106;iRNA_m5C:0 46273 chr19 55019216 55019216 1 + G T LUSC 55019213 + 55019193 55019233 41 TTGGGGTTCAAACATTCCGCCTGGAGAGGGAGGATAGAGCC TTGGGGTTCAAACATTCCGCCTGTAGAGGGAGGATAGAGCC < 41bp 0.833108874906854 0.485758120224461 0.07837558 0.020113856 prediction 0.666217749813708 Functional Loss - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019213 chr19:55019216 stopgain 0.068 0 24 hm5C_associated_SNPs_50921 0 0 0 0 1 exosome 0.500231643921087 0.500231643921092 0 0 hm5C_site_46273 DeepMRMD:0;iRNA_m5C:0 46274 chr7 45928308 45928308 1 + G T STAD 45928305 + 45928285 45928325 41 GTACTGCTCCTGCTGACTGTCCAGGTCGGCGTGACAGCCGG GTACTGCTCCTGCTGACTGTCCATGTCGGCGTGACAGCCGG < 41bp 0.833076921733216 0.478999971503369 0.4777818 0.1161755 prediction 0.666153843466432 Functional Loss - IGFBP1 ENSG00000146678 CDS Human protein_coding chr7:45928305 chr7:45928308 nonsynonymous SNV 0.050 0 24 hm5C_associated_SNPs_50922 0 0 1 0 0 nucleus 0.500231643901049 0.500231581828634 0 1.24144830193629e-07 hm5C_site_46274 DeepMRMD:0;iRNA_m5C:1.24144830193629e-07 46275 chr17 43175843 43175843 1 + G T LUAD 43175840 + 43175820 43175860 41 GTTCTGATCCGAGAGATCACCAGGCGGGTTCACCTGGAGGG GTTCTGATCCGAGAGATCACCAGTCGGGTTCACCTGGAGGG < 41bp 0.83306921211956 0.471435022979682 0.90682316 0.3892014 prediction 0.66613842423912 Functional Loss - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43175840 chr17:43175843 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50923 0 0 1 0 2 Ribosome 0.500231724152462 0.500231894874656 0.81364632 0 hm5C_site_46275 DeepMRMD:0.81364632;iRNA_m5C:0 46276 chr12 108641878 108641878 1 + G T LUAD 108641875 + 108641855 108641895 41 TGCACTTTGAGGACCTGAAGCAGGACCTCTTTGTCCAGCTG TGCACTTTGAGGACCTGAAGCAGTACCTCTTTGTCCAGCTG < 41bp 0.833056122796787 0.47341338678099 0.4897277 0.090684414 prediction 0.666112245593574 Functional Loss - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108641875 chr12:108641878 nonsynonymous SNV 0.943 4 24 hm5C_associated_SNPs_50924 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_46276 DeepMRMD:0;iRNA_m5C:0 46277 chr20 32332916 32332916 1 + G T rs577699019 32332913 + 32332893 32332933 41 GCGGGTATGACCCCAGATGACGAGGATGTATTTCTCTGCGG GCGGGTATGACCCCAGATGACGATGATGTATTTCTCTGCGG < 41bp 0.833051904054452 0.47247242290416 0.8648776 0.22195628 prediction 0.666103808108904 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32332913 chr20:32332916 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_50925 0 0 0 1 1 chromatin 0.500231644697668 0.500231653047322 0.7297552 0 hm5C_site_46277 DeepMRMD:0.7297552;iRNA_m5C:0 46278 chr1 226253422 226253422 1 + A C BLCA 226253418 + 226253398 226253438 41 AGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGT AGTCCACTGAACTTCTGATTCGCACACTTCCCTTCCAGCGT < 41bp 0.878573462857499 0.545551048496694 0.12362555 0.049224645 prediction 0.666044828721611 Functional Loss - H3F3A ENSG00000163041 CDS Human protein_coding chr1:226253418 chr1:226253422 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_50926 0 0 0 0 2 Cytosol 0.500231643936574 0.50023164392102 0 3.11062287039476e-11 hm5C_site_46278 DeepMRMD:0;iRNA_m5C:3.11062287039476e-11 46279 chr8 94935176 94935176 1 + G T LUSC 94935173 + 94935153 94935193 41 CTGGCGATAGCAGAGCCATGCTGGGTGTGCAGGAAGAGGAC CTGGCGATAGCAGAGCCATGCTGTGTGTGCAGGAAGAGGAC < 41bp 0.856894618395734 0.523877958951329 0.5250974 0.16112432 prediction 0.666033318888809 Functional Loss - PDP1 ENSG00000164951 CDS Human protein_coding chr8:94935173 chr8:94935176 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_50927 0 0 0 0 0 Ribosome 0.500217041094946 0.500232542945385 0.0501948000000001 0 hm5C_site_46279 DeepMRMD:0.0501948000000001;iRNA_m5C:0 46280 chr15 85164078 85164078 1 + G T TGCT 85164075 + 85164055 85164095 41 TAGGCCTGCAGGGCACCTACCTAGGGGAGAAGCCCTACGAA TAGGCCTGCAGGGCACCTACCTATGGGAGAAGCCCTACGAA < 41bp 0.833013856751586 0.472659416619413 0.92089427 0.24322906 prediction 0.666027713503171 Functional Loss - ZSCAN2 ENSG00000176371 CDS Human protein_coding chr15:85164075 chr15:85164078 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_50928 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921104 0.84178854 0 hm5C_site_46280 DeepMRMD:0.84178854;iRNA_m5C:0 46281 chr3 119536045 119536045 1 + A C CESC 119536041 + 119536021 119536061 41 CCCCTCATGCAGGAGTTGTTCGGCATCACAGGTAGCTGAGC CCCCTCATGCAGGAGTTGTTCGGCCTCACAGGTAGCTGAGC < 41bp 0.868762314498554 0.535770314599503 0.89750016 0.9238908 prediction 0.665983999798102 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119536041 chr3:119536045 nonsynonymous SNV 0.741 1 25 hm5C_associated_SNPs_50929 0 0 0 0 0 nucleus 0.500234167031723 0.500231643922107 0 5.04621923225201e-06 hm5C_site_46281 DeepMRMD:0;iRNA_m5C:5.04621923225201e-06 46282 chr11 70171109 70171109 1 + G T SKCM 70171106 + 70171086 70171126 41 TATTTGAACACCACAAAGCTCTGGATGAAAAGGTGCCATCA TATTTGAACACCACAAAGCTCTGTATGAAAAGGTGCCATCA < 41bp 0.834123737516382 0.501144488785649 0.87644273 0.33570552 prediction 0.665958497461467 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70171106 chr11:70171109 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_50930 0 0 1 2 1 Ribosome 0.500231643941287 0.500231643817939 0.75288546 2.46694664696179e-10 hm5C_site_46282 DeepMRMD:0.75288546;iRNA_m5C:2.46694664696179e-10 46283 chr6 13595765 13595765 1 + A C rs145972102 13595761 + 13595741 13595781 41 GGAGTTGTGGCTGAGAATTACAAGAGTCCAATTTGTCCAGC GGAGTTGTGGCTGAGAATTACAAGCGTCCAATTTGTCCAGC < 41bp 0.870894734550948 0.53794238876652 0.56595546 0.23801792 prediction 0.665904691568855 Functional Loss - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13595761 chr6:13595765 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_50931 0 0 0 0 1 Nucleus 0.500231642152433 0.500231632303905 0.13191092 1.96970553201226e-08 hm5C_site_46283 DeepMRMD:0.13191092;iRNA_m5C:1.96970553201226e-08 46284 chr7 128588141 128588141 1 + G T UCEC 128588138 + 128588118 128588158 41 AACCCCATCCAGCGGGAGGTCAAGACCAAGCTTTTCAGCCT AACCCCATCCAGCGGGAGGTCAATACCAAGCTTTTCAGCCT < 41bp 0.838412575406187 0.505465727475652 0.6719345 0.09457955 prediction 0.665893695861071 Functional Loss - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128588138 chr7:128588141 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_50932 0 0 0 1 0 exosome 0.500231643921092 0.500231643921092 0.343869 0 hm5C_site_46284 DeepMRMD:0.343869;iRNA_m5C:0 46285 chr17 43246431 43246431 1 + C A UCEC 43246434 - 43246414 43246454 41 GTGTCAGGGGCAGGGAACCACCAGAGTCATGACGCTCAGGG GTGTCAGGGGCAGGGAACCACCATAGTCATGACGCTCAGGG < 41bp 0.832943686996235 0.496960260108331 0.7687578 0.40291423 prediction 0.665887373992469 Functional Loss - HEXIM2 ENSG00000168517 CDS Human protein_coding chr17:43246434 chr17:43246431 nonsynonymous SNV 0.436 1 24 hm5C_associated_SNPs_50933 0 0 0 0 0 chromatin 0.500231683597468 0.50023164403032 0.5375156 7.91342944506113e-08 hm5C_site_46285 DeepMRMD:0.5375156;iRNA_m5C:7.91342944506113e-08 46286 chr7 76144483 76144483 1 + A C rs1636632 76144479 + 76144459 76144499 41 GCCGCCACACTGCCGGTGGGCTGCAAGCCTGGCCTGGACCC GCCGCCACACTGCCGGTGGGCTGCCAGCCTGGCCTGGACCC < 41bp 0.832941142292557 0.452826899316944 0.083830535 0.03884411 prediction 0.665882284585115 Functional Loss - UPK3B ENSG00000243566 CDS Human protein_coding chr7:76144479 chr7:76144483 nonsynonymous SNV 0.918 1 25 hm5C_associated_SNPs_50934 0 0 0 0 0 exosome 0.500231643921093 0.500231643921083 0 1.93178806284777e-14 hm5C_site_46286 DeepMRMD:0;iRNA_m5C:1.93178806284777e-14 46287 chr1 28598902 28598902 1 + G T UCEC 28598899 + 28598879 28598919 41 CTGGGCCTCCACCGGGCCCCCGAGAAGCTGCGCAAACTCAG CTGGGCCTCCACCGGGCCCCCGATAAGCTGCGCAAACTCAG < 41bp 0.856587445169369 0.523649384584853 0.5734806 0.2259374 prediction 0.665876121169032 Functional Loss - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28598899 chr1:28598902 nonsynonymous SNV 0.892 0 24 hm5C_associated_SNPs_50935 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.1469612 0 hm5C_site_46287 DeepMRMD:0.1469612;iRNA_m5C:0 46288 chr2 132021678 132021678 1 + G T LUAD 132021675 + 132021655 132021695 41 TGCGCCTAGACCTGGCTGGGCGGGAACTGCCTGACTACCTC TGCGCCTAGACCTGGCTGGGCGGTAACTGCCTGACTACCTC < 41bp 0.852828448538694 0.519904670019565 0.6785793 0.2576462 prediction 0.665847557038257 Functional Loss - POTEE ENSG00000188219 CDS Human protein_coding chr2:132021675 chr2:132021678 stopgain 0.010 0 24 hm5C_associated_SNPs_50936 0 0 1 0 0 chromatin 0.500231644783435 0.500231643921144 0.3571586 1.72458092251304e-09 hm5C_site_46288 DeepMRMD:0.3571586;iRNA_m5C:1.72458092251304e-09 46289 chr1 1563074 1563074 1 + G T LUAD 1563071 + 1563051 1563091 41 AGGAACCAGCCCGAGGCCACCAGGGTGCTCCTGAGTGCTGG AGGAACCAGCCCGAGGCCACCAGTGTGCTCCTGAGTGCTGG < 41bp 0.839547210569139 0.50662682350136 0.90460813 0.22447738 prediction 0.665840774135559 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1563071 chr1:1563074 nonsynonymous SNV 0.298 1 24 hm5C_associated_SNPs_50937 0 0 1 0 1 Ribosome 0.500231641251986 0.500231643927667 0.80921626 0 hm5C_site_46289 DeepMRMD:0.80921626;iRNA_m5C:0 46290 chr20 3784086 3784086 1 + G T GBM 3784083 + 3784063 3784103 41 TTGCCCCTGGAACGCGACGCCGAGAGCTTCCTACTGAAGAG TTGCCCCTGGAACGCGACGCCGATAGCTTCCTACTGAAGAG < 41bp 0.848818445145857 0.515900005392161 0.7934731 0.24463421 prediction 0.665836879507391 Functional Loss - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3784083 chr20:3784086 nonsynonymous SNV 0.089 4 24 hm5C_associated_SNPs_50938 0 0 1 0 2 Ribosome 0.500231643921093 0.500231643921092 0.5869462 4.44089209850063e-16 hm5C_site_46290 DeepMRMD:0.5869462;iRNA_m5C:4.44089209850063e-16 46291 chr11 103908258 103908258 1 + G T UCEC 103908255 + 103908235 103908275 41 ATAGCGATAGAAGAGGCCCCCGAGAGTTTTGGACAAGTGAC ATAGCGATAGAAGAGGCCCCCGATAGTTTTGGACAAGTGAC < 41bp 0.832911791091154 0.49122256809329 0.5132323 0.124105275 prediction 0.665823582182308 Functional Loss - DDI1 ENSG00000170967 CDS Human protein_coding chr11:103908255 chr11:103908258 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_50939 0 0 0 0 0 exosome 0.50023164392107 0.500231587883713 0.0264645999999999 1.12074714841981e-07 hm5C_site_46291 DeepMRMD:0.0264645999999999;iRNA_m5C:1.12074714841981e-07 46292 chr1 186276661 186276661 1 + A C rs61831150 186276657 + 186276637 186276677 41 ACCACCAAGAAGCCTGCACCCACCACTCCCAAAGAGCCTGC ACCACCAAGAAGCCTGCACCCACCCCTCCCAAAGAGCCTGC < 41bp 0.881949248342273 0.549037762980144 0.063236 0.015620202 prediction 0.665822970724257 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276657 chr1:186276661 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_50940 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643920961 0 2.63566946046012e-13 hm5C_site_46292 DeepMRMD:0;iRNA_m5C:2.63566946046012e-13 46293 chr5 140581378 140581378 1 + A C rs61745615 140581374 + 140581354 140581394 41 CTACCTGCCGCTCCCTGAGGCGGCACCGGCCCAGGCCCAGG CTACCTGCCGCTCCCTGAGGCGGCCCCGGCCCAGGCCCAGG < 41bp 0.832883263573203 0.485989311930841 0.60458916 0.541877 prediction 0.665766527146405 Functional Loss - PCDHB11 ENSG00000197479 CDS Human protein_coding chr5:140581374 chr5:140581378 synonymous SNV . 0 25 hm5C_associated_SNPs_50941 0 0 0 0 0 Nucleus 0.500231642757196 0.500231643921092 0.12542432 0 hm5C_site_46293 DeepMRMD:0.12542432;iRNA_m5C:0 46294 chr6 25726432 25726432 1 + G T LUSC 25726429 + 25726409 25726449 41 AGCACTGCCTGAATGTTAGGCAGGACTCCGCCCTGGGCAAT AGCACTGCCTGAATGTTAGGCAGTACTCCGCCCTGGGCAAT < 41bp 0.832870856712456 0.491990693853601 0.7984685 0.16161785 prediction 0.665741713424912 Functional Loss - HIST1H2AA ENSG00000164508 CDS Human protein_coding chr6:25726429 chr6:25726432 synonymous SNV . 0 24 hm5C_associated_SNPs_50942 0 0 0 0 0 unknown 0.500231643921092 0.500231644452613 0.596937 0 hm5C_site_46294 DeepMRMD:0.596937;iRNA_m5C:0 46295 chr1 168550395 168550395 1 + G T LUAD 168550392 + 168550372 168550412 41 AAATCCAACACCAGAAATAACATGATCCAGACCAAGCCAAC AAATCCAACACCAGAAATAACATTATCCAGACCAAGCCAAC < 41bp 0.836263652349616 0.503398855458936 0.08977407 0.06438959 prediction 0.665729593781359 Functional Loss - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168550392 chr1:168550395 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_50943 0 0 0 0 0 Dendrite 0.500231643921092 0.50023164392273 0 0 hm5C_site_46295 DeepMRMD:0;iRNA_m5C:0 46296 chr11 55579578 55579578 1 + G T KIRC 55579575 + 55579555 55579595 41 TTGAATGAGAGTGTTACCATCATGATCATCCTCACCTCCTA TTGAATGAGAGTGTTACCATCATTATCATCCTCACCTCCTA < 41bp 0.832840892542826 0.494954097078986 0.1397008 0.040980875 prediction 0.665681785085651 Functional Loss - OR5L1 ENSG00000186117 CDS Human other chr11:55579575 chr11:55579578 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_50944 0 0 0 0 0 unknown 0.500231643630377 0.500231643914149 0 0 hm5C_site_46296 DeepMRMD:0;iRNA_m5C:0 46297 chr16 28975123 28975123 1 + G T HNSC 28975120 + 28975100 28975140 41 CTTTGATGGGACAAAGCTTTCAGGCAGGGAGCTGCCAGCTG CTTTGATGGGACAAAGCTTTCAGTCAGGGAGCTGCCAGCTG < 41bp 0.8445187969315 0.511679908974748 0.49704674 0.1245431 prediction 0.665677775913504 Functional Loss - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28975120 chr16:28975123 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_50945 0 0 1 0 1 Ribosome 0.500231644140257 0.500231643921093 0 4.38328484619888e-10 hm5C_site_46297 DeepMRMD:0;iRNA_m5C:4.38328484619888e-10 46298 chr1 202287710 202287710 1 + G T SARC 202287707 + 202287687 202287727 41 CAAACTGTACTGTGACCTGCCGCGGGGCGACTTTGAGGCCG CAAACTGTACTGTGACCTGCCGCTGGGCGACTTTGAGGCCG < 41bp 0.83282419116822 0.469468677723109 0.8876859 0.27135515 prediction 0.665648382336441 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202287707 chr1:202287710 nonsynonymous SNV 0.408 1 24 hm5C_associated_SNPs_50946 0 0 0 0 0 nucleoplasm 0.50023164394695 0.500231639322383 0.7753718 9.24913323707699e-09 hm5C_site_46298 DeepMRMD:0.7753718;iRNA_m5C:9.24913323707699e-09 46299 chr3 186358463 186358463 1 + G T UCEC 186358460 + 186358440 186358480 41 TCAACCGAGTGAACGACGCCCAGGAATACAGACGGGCAAGT TCAACCGAGTGAACGACGCCCAGTAATACAGACGGGCAAGT < 41bp 0.832815103699693 0.495951438559386 0.8447697 0.58338475 prediction 0.665630207399385 Functional Loss - FETUB ENSG00000090512 CDS Human protein_coding chr3:186358460 chr3:186358463 stopgain 0.094 0 24 hm5C_associated_SNPs_50947 0 0 0 0 1 exosome 0.500231636456792 0.500231643909208 0.5227699 0 hm5C_site_46299 DeepMRMD:0.5227699;iRNA_m5C:0 46300 chr10 126631286 126631286 1 + G T LGG 126631283 + 126631263 126631303 41 TCCAGACTCTAGTGCAAGACCAAGGGTGAAATCTTCGTATA TCCAGACTCTAGTGCAAGACCAATGGTGAAATCTTCGTATA < 41bp 0.846456454490518 0.513702018505958 0.91117775 0.55636716 prediction 0.66550887196912 Functional Loss - ZRANB1 ENSG00000019995 CDS Human protein_coding chr10:126631283 chr10:126631286 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_50948 0 0 1 0 0 Ribosome 0.500231643919857 0.500231474679719 0.70962118 3.3848027580774e-07 hm5C_site_46300 DeepMRMD:0.70962118;iRNA_m5C:3.3848027580774e-07 46301 chr19 56172528 56172528 1 + G T rs73936311 56172525 + 56172505 56172545 41 AGACAAGCCCGGCGCCTCTACGTGGGCAACATCCCCTTTGG AGACAAGCCCGGCGCCTCTACGTTGGCAACATCCCCTTTGG < 41bp 0.832745151675187 0.458935912920139 0.84693074 0.27100116 prediction 0.665490303350375 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172525 chr19:56172528 synonymous SNV . 0 24 hm5C_associated_SNPs_50949 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.69386148 0 hm5C_site_46301 DeepMRMD:0.69386148;iRNA_m5C:0 46302 chr7 100732822 100732822 1 + G T LUAD 100732819 + 100732799 100732839 41 CTGGTCGTGTCCCTCAGTAACGGGACCATCCACATCTTTCG CTGGTCGTGTCCCTCAGTAACGGTACCATCCACATCTTTCG < 41bp 0.855629007656855 0.522907728896837 0.8957349 0.18078691 prediction 0.665442557520036 Functional Loss - TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100732819 chr7:100732822 synonymous SNV . 0 24 hm5C_associated_SNPs_50950 0 0 1 0 0 nucleus 0.500231643921092 0.500231643921092 0.7914698 0 hm5C_site_46302 DeepMRMD:0.7914698;iRNA_m5C:0 46303 chr11 61563474 61563474 1 + A C UCEC 61563470 + 61563450 61563490 41 AATTCCACCTGAGCCGGATTCTGCAGGAGCTGGGCCTGAAC AATTCCACCTGAGCCGGATTCTGCCGGAGCTGGGCCTGAAC < 41bp 0.885760622873765 0.553075548785231 0.7685586 0.44053757 prediction 0.665370148177069 Functional Loss - FEN1 ENSG00000168496 CDS Human protein_coding chr11:61563470 chr11:61563474 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_50951 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0.5371172 0 hm5C_site_46303 DeepMRMD:0.5371172;iRNA_m5C:0 46304 chr10 85972960 85972960 1 + G T UCEC 85972957 + 85972937 85972977 41 CACACGGGGGAGATCTGGCTCAAGAATTCCATCCGCTCCCT CACACGGGGGAGATCTGGCTCAATAATTCCATCCGCTCCCT < 41bp 0.868734195419393 0.536049715622055 0.19623947 0.053269148 prediction 0.665368959594677 Functional Loss - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85972957 chr10:85972960 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_50952 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_46304 DeepMRMD:0;iRNA_m5C:0 46305 chr22 27021500 27021500 1 + G T LGG 27021497 + 27021477 27021517 41 GGCAGCAGTACATTCTGGAACGAGGCGAATATCCAAGCTGG GGCAGCAGTACATTCTGGAACGATGCGAATATCCAAGCTGG < 41bp 0.832677765791525 0.469986704976498 0.91793406 0.36672252 prediction 0.665355531583051 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27021497 chr22:27021500 nonsynonymous SNV 0.792 5 24 hm5C_associated_SNPs_50953 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643821337 0.83586812 1.99510408194215e-10 hm5C_site_46305 DeepMRMD:0.83586812;iRNA_m5C:1.99510408194215e-10 46306 chr10 30736811 30736811 1 + G T UCEC 30736808 + 30736788 30736828 41 TATTGGTTCTGATTTTATTCCTCGGGGCGCCTTTGGAAAGG TATTGGTTCTGATTTTATTCCTCTGGGCGCCTTTGGAAAGG < 41bp 0.832654448389866 0.482714009472089 0.08855584 0.03949964 prediction 0.665308896779733 Functional Loss - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30736808 chr10:30736811 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_50954 0 0 1 0 1 Cytosol 0.500231643921092 0.500231644627213 0 0 hm5C_site_46306 DeepMRMD:0;iRNA_m5C:0 46307 chr1 11766744 11766744 1 + G T LUAD 11766741 + 11766721 11766761 41 AGCAGGGAGCACAAGAGACGCAGGGACAGGTTGAGGCTGCA AGCAGGGAGCACAAGAGACGCAGTGACAGGTTGAGGCTGCA < 41bp 0.832648662451475 0.470944800831411 0.886037 0.29943854 prediction 0.66529732490295 Functional Loss - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11766741 chr1:11766744 nonsynonymous SNV 0.724 2 24 hm5C_associated_SNPs_50955 0 0 0 0 1 exosome 0.500229621571221 0.5041255139361 0.772074 0 hm5C_site_46307 DeepMRMD:0.772074;iRNA_m5C:0 46308 chr11 119050671 119050671 1 + G T COAD 119050668 + 119050648 119050688 41 GCTCAGCTTGGCTGCCCCATCAAGAACCTGGATGCCCTGGA GCTCAGCTTGGCTGCCCCATCAATAACCTGGATGCCCTGGA < 41bp 0.832643963103412 0.481943501423733 0.8384891 0.36002207 prediction 0.665287926206825 Functional Loss - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119050668 chr11:119050671 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_50956 0 0 0 0 0 exosome 0.50023164392111 0.500231643921092 0.6769782 3.50830475781549e-14 hm5C_site_46308 DeepMRMD:0.6769782;iRNA_m5C:3.50830475781549e-14 46309 chrX 37028607 37028607 1 + G T UCEC 37028604 + 37028584 37028624 41 CGTCTCCACCCAGAGCCTCCCAAGACTCGGGTGTCCAGTCT CGTCTCCACCCAGAGCCTCCCAATACTCGGGTGTCCAGTCT < 41bp 0.83263802776022 0.477608090326994 0.30340132 0.12906384 prediction 0.66527605552044 Functional Loss - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37028604 chrX:37028607 nonsynonymous SNV 0.009 2 24 hm5C_associated_SNPs_50957 0 0 0 0 0 unknown 0.500231643936206 0.500231643921093 0 3.02244895777903e-11 hm5C_site_46309 DeepMRMD:0;iRNA_m5C:3.02244895777903e-11 46310 chr1 196749075 196749075 1 + G T LUAD 196749072 + 196749052 196749092 41 GTTACATGTACGGAGAAAGGCTGGTCTCCTACTCCCAGATG GTTACATGTACGGAGAAAGGCTGTTCTCCTACTCCCAGATG < 41bp 0.832595892586842 0.490453771953361 0.017997473 0.017557949 prediction 0.665191785173684 Functional Loss - CFHR3 ENSG00000116785 CDS Human protein_coding chr1:196749072 chr1:196749075 nonsynonymous SNV 0.004 4 24 hm5C_associated_SNPs_50958 0 0 0 0 1 Endoplasmic reticulum 0.500231643921499 0.500231643921092 0 8.13571432445315e-13 hm5C_site_46310 DeepMRMD:0;iRNA_m5C:8.13571432445315e-13 46311 chr15 81561934 81561934 1 + G T UCEC 81561931 + 81561911 81561951 41 AGCTCAGCTCGTGCAGCCATCTGGGGGCCTCCAGGCTTCAG AGCTCAGCTCGTGCAGCCATCTGTGGGCCTCCAGGCTTCAG < 41bp 0.84045596683164 0.507860667728953 0.9485267 0.2972601 prediction 0.665190598205375 Functional Loss - IL16 ENSG00000172349 CDS Human protein_coding chr15:81561931 chr15:81561934 nonsynonymous SNV 0.926 1 24 hm5C_associated_SNPs_50959 0 0 0 0 2 Nucleus 0.500231643966627 0.500231643917552 0.8970534 9.81499326258017e-11 hm5C_site_46311 DeepMRMD:0.8970534;iRNA_m5C:9.81499326258017e-11 46312 chr22 32871230 32871230 1 + G T rs11703157 32871227 + 32871207 32871247 41 GGCGTGGCCGGGCGATAGGCCAAGTGCGGGGACGCCGGGGG GGCGTGGCCGGGCGATAGGCCAATTGCGGGGACGCCGGGGG < 41bp 0.839251009700396 0.506657380894155 0.83903176 0.30725542 prediction 0.665187257612483 Functional Loss - FBXO7 ENSG00000100225 UTR5 Human protein_coding chr22:32871227 chr22:32871230 . . 0 24 hm5C_associated_SNPs_50960 0 0 1 0 0 chromatin 0.500231643896751 0.500231643921092 0.67806352 0 hm5C_site_46312 DeepMRMD:0.67806352;iRNA_m5C:0 46313 chr14 94568245 94568245 1 + G T HNSC 94568242 + 94568222 94568262 41 GCCGCATCCTCCATAGCAGCCAAGATGATGTCTACAGCAGC GCCGCATCCTCCATAGCAGCCAATATGATGTCTACAGCAGC < 41bp 0.832589376677546 0.470183805732663 0.25540277 0.11596975 prediction 0.665178753355092 Functional Loss - IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94568242 chr14:94568245 nonsynonymous SNV 0.126 1 24 hm5C_associated_SNPs_50961 0 0 1 0 2 Ribosome 0.500231644310519 0.500232707824009 0 0 hm5C_site_46313 DeepMRMD:0;iRNA_m5C:0 46314 chrX 129305970 129305970 1 + G T rs761574941 129305967 + 129305947 129305987 41 GAGCTCGCTCGCCTCGAGCGCACGAACGTGGACGTTCTCTT GAGCTCGCTCGCCTCGAGCGCACTAACGTGGACGTTCTCTT < 41bp 0.832561100251539 0.482402107783512 0.23973814 0.18196699 prediction 0.665122200503077 Functional Loss - RAB33A ENSG00000134594 UTR5 Human protein_coding chrX:129305967 chrX:129305970 . . 0 24 hm5C_associated_SNPs_50962 0 0 0 0 0 exosome 0.500231643696085 0.500231765269297 0 0 hm5C_site_46314 DeepMRMD:0;iRNA_m5C:0 46315 chr22 21044347 21044347 1 + G T UCEC 21044344 + 21044324 21044364 41 CTCTCTGTGGGGCCCAGGAGCTGGGAGTCACCCCTTTGGGG CTCTCTGTGGGGCCCAGGAGCTGTGAGTCACCCCTTTGGGG < 41bp 0.832551441977793 0.470177167138352 0.82369816 0.20864311 prediction 0.665102883955586 Functional Loss - POM121L4P ENSG00000217261 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:21044344 chr22:21044347 . . 0 24 hm5C_associated_SNPs_50963 0 0 0 0 0 unknown 0.500231643921092 0.500231643921079 0.64739632 2.68673971959288e-14 hm5C_site_46315 DeepMRMD:0.64739632;iRNA_m5C:2.68673971959288e-14 46316 chr16 56672643 56672643 1 + G T THCA 56672640 + 56672620 56672660 41 CTTGGGATCTCCAACCTCACCGCGGCTCGAAATGGACCCCA CTTGGGATCTCCAACCTCACCGCTGCTCGAAATGGACCCCA < 41bp 0.83254608928197 0.48108291588621 0.19051346 0.1410504 prediction 0.665092178563939 Functional Loss - MT1A ENSG00000205362 UTR5 Human protein_coding chr16:56672640 chr16:56672643 . . 0 24 hm5C_associated_SNPs_50964 0 0 0 0 1 exosome 0.500231643921092 0.500231643886685 0 6.88127332892918e-11 hm5C_site_46316 DeepMRMD:0;iRNA_m5C:6.88127332892918e-11 46317 chrX 71360329 71360329 1 + G T UCEC 71360326 + 71360306 71360346 41 AGTGTAGAGGACGAGGGCCCCAAGGTGAGGGTTCTGCCTGA AGTGTAGAGGACGAGGGCCCCAATGTGAGGGTTCTGCCTGA < 41bp 0.860744872890237 0.528199501350834 0.89906067 0.1146791 prediction 0.665090743078806 Functional Loss - NHSL2 ENSG00000204131 CDS Human protein_coding chrX:71360326 chrX:71360329 nonsynonymous SNV 0.842 4 24 hm5C_associated_SNPs_50965 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.79812134 0 hm5C_site_46317 DeepMRMD:0.79812134;iRNA_m5C:0 46318 chr19 50549315 50549315 1 + A C HNSC 50549311 + 50549291 50549331 41 AAGTGCCACGAGAGTGTTCACGCCAGAGAAAAACAAGGATT AAGTGCCACGAGAGTGTTCACGCCCGAGAAAAACAAGGATT < 41bp 0.832515923513198 0.452789445142923 0.28627878 0.093434304 prediction 0.665031847026395 Functional Loss - ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50549311 chr19:50549315 synonymous SNV . 0 25 hm5C_associated_SNPs_50966 0 0 1 0 0 Cytosol 0.500234146033071 0.500231612702842 0 5.066660457409e-06 hm5C_site_46318 DeepMRMD:0;iRNA_m5C:5.066660457409e-06 46319 chr7 37901657 37901657 1 + G T STAD 37901654 + 37901634 37901674 41 GCAAAATTATCGAAAAGATTCAGGGTGCAAATGCACCGCTT GCAAAATTATCGAAAAGATTCAGTGTGCAAATGCACCGCTT < 41bp 0.832512010555992 0.49310866771411 0.9250362 0.13469094 prediction 0.665024021111983 Functional Loss - NME8 ENSG00000086288 CDS Human protein_coding chr7:37901654 chr7:37901657 nonsynonymous SNV 0.920 3 24 hm5C_associated_SNPs_50967 0 0 0 0 2 exosome 0.500231643920762 0.50023168103698 0.8500724 0 hm5C_site_46319 DeepMRMD:0.8500724;iRNA_m5C:0 46320 chr11 5717876 5717876 1 + G T UCEC 5717873 + 5717853 5717893 41 TTCCGCATAAACGAGGTGGTCAAGGAATGTCAGGTAGGCTC TTCCGCATAAACGAGGTGGTCAATGAATGTCAGGTAGGCTC < 41bp 0.832510395332035 0.477460945310054 0.862687 0.30252874 prediction 0.665020790664069 Functional Loss - TRIM22 ENSG00000132274 CDS Human protein_coding chr11:5717873 chr11:5717876 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_50968 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643919732 0.725374 2.72093458875133e-12 hm5C_site_46320 DeepMRMD:0.725374;iRNA_m5C:2.72093458875133e-12 46321 chr11 55579072 55579072 1 + G T LUSC 55579069 + 55579049 55579089 41 GAGTCACGTTGTTAGCCAACCTGGGCATGATTGCACTGATT GAGTCACGTTGTTAGCCAACCTGTGCATGATTGCACTGATT < 41bp 0.832489949173795 0.488431409793195 0.84101295 0.2854497 prediction 0.66497989834759 Functional Loss - OR5L1 ENSG00000186117 CDS Human other chr11:55579069 chr11:55579072 nonsynonymous SNV 0.038 3 24 hm5C_associated_SNPs_50969 0 0 0 0 0 unknown 0.500231495877466 0.500225910673269 0.6820259 1.11704083940456e-05 hm5C_site_46321 DeepMRMD:0.6820259;iRNA_m5C:1.11704083940456e-05 46322 chr9 136522303 136522303 1 + C A HNSC 136522306 - 136522286 136522326 41 TTGCAGTGCATGGAGATGGGCGCGAAGCTGTACAGGGCCTT TTGCAGTGCATGGAGATGGGCGCTAAGCTGTACAGGGCCTT < 41bp 0.845333141614391 0.512857127266813 0.8842373 0.6973977 prediction 0.664952028695155 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136522306 chr9:136522303 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_50970 0 0 0 0 1 cytosol 0.500231710649318 0.500231643921728 0.3736792 1.33455180240105e-07 hm5C_site_46322 DeepMRMD:0.3736792;iRNA_m5C:1.33455180240105e-07 46323 chr4 728725 728725 1 + A C LUSC 728721 + 728701 728741 41 ACCTGTGCTTTGATGACAGTCTGCAGGAGCTGCCTGGTGAA ACCTGTGCTTTGATGACAGTCTGCCGGAGCTGCCTGGTGAA < 41bp 0.83247595162685 0.463505663832066 0.29266098 0.13833037 prediction 0.664951903253699 Functional Loss - PCGF3 ENSG00000185619 CDS Human protein_coding chr4:728721 chr4:728725 synonymous SNV . 0 25 hm5C_associated_SNPs_50971 0 0 1 0 1 Cytosol 0.500231643825909 0.500231643921068 0 0 hm5C_site_46323 DeepMRMD:0;iRNA_m5C:0 46324 chr19 7593856 7593856 1 + G T UCEC 7593853 + 7593833 7593873 41 ATGAAGATCGGCATCGAGGCCAAGGTGCGTCCTGCCAACAC ATGAAGATCGGCATCGAGGCCAATGTGCGTCCTGCCAACAC < 41bp 0.832469203911298 0.476048835237554 0.7893206 0.21289012 prediction 0.664938407822595 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7593853 chr19:7593856 nonsynonymous SNV 0.951 5 24 hm5C_associated_SNPs_50972 0 0 0 0 1 chromatin 0.500232433604312 0.500384706586721 0.5786412 0 hm5C_site_46324 DeepMRMD:0.5786412;iRNA_m5C:0 46325 chr15 101434170 101434170 1 + C A LUAD 101434173 - 101434153 101434193 41 AGCTTCCACACCAGCATCAGCAGGGGGAAGTTCCACTGCGA AGCTTCCACACCAGCATCAGCAGTGGGAAGTTCCACTGCGA < 41bp 0.862014960331967 0.529554925360932 0.94593596 0.78360426 prediction 0.664920069942071 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101434173 chr15:101434170 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_50973 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921093 0.3246634 0 hm5C_site_46325 DeepMRMD:0.3246634;iRNA_m5C:0 46326 chr7 37960767 37960767 1 + G T KIRP 37960764 + 37960744 37960784 41 CCTACGACGGGCTCAACCAGCGCGTGCGGGTGCTGGACGAG CCTACGACGGGCTCAACCAGCGCTTGCGGGTGCTGGACGAG < 41bp 0.832439233010285 0.493392082344949 0.6848539 0.33908677 prediction 0.66487846602057 Functional Loss - EPDR1 ENSG00000086289 CDS Human protein_coding chr7:37960764 chr7:37960767 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_50974 0 0 1 0 1 Ribosome 0.500231643916931 0.500231643921092 0.3697078 0 hm5C_site_46326 DeepMRMD:0.3697078;iRNA_m5C:0 46327 chrX 103294742 103294742 1 + G T rs189590767 103294739 + 103294719 103294759 41 GCTTCACCCCCTATTTCCCCCGGGTGCTGAAGCAGGTTCAC GCTTCACCCCCTATTTCCCCCGGTTGCTGAAGCAGGTTCAC < 41bp 0.863195493557555 0.530772919686045 0.93064594 0.88575876 prediction 0.664845147743019 Functional Loss - H2BFM ENSG00000101812 CDS Human protein_coding chrX:103294739 chrX:103294742 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_50975 0 0 0 0 0 unknown 0.500231643921088 0.500231643921092 0.0897743600000001 0 hm5C_site_46327 DeepMRMD:0.0897743600000001;iRNA_m5C:0 46328 chr2 120194569 120194569 1 + G T SKCM 120194566 + 120194546 120194586 41 GCCCTGGCTGTGGTCCTGTCCTCGGTCTCCATTTGTGATGG GCCCTGGCTGTGGTCCTGTCCTCTGTCTCCATTTGTGATGG < 41bp 0.849766868666946 0.517377387999652 0.031938106 0.0058654547 prediction 0.664778961334589 Functional Loss - TMEM37 ENSG00000171227 CDS Human protein_coding chr2:120194566 chr2:120194569 nonsynonymous SNV 0.098 0 24 hm5C_associated_SNPs_50976 0 0 1 0 0 Endoplasmic reticulum 0.500231643920078 0.500231648484659 0 0 hm5C_site_46328 DeepMRMD:0;iRNA_m5C:0 46329 chr16 30583678 30583678 1 + C A STAD 30583681 - 30583661 30583701 41 CCAGGGTGTGCGCGTCTTCCCAAGGGGTCTGGGGACCAAAT CCAGGGTGTGCGCGTCTTCCCAATGGGTCTGGGGACCAAAT < 41bp 0.832384452527814 0.485555396660108 0.94876033 0.5248569 prediction 0.664768905055628 Functional Loss - ZNF688 ENSG00000239791 ncRNA_exonic Human antisense chr16:30583681 chr16:30583678 . . 0 24 hm5C_associated_SNPs_50977 0 0 0 0 0 Cytosol 0.500231643921093 0.500231643921092 0.84780686 2.22044604925031e-16 hm5C_site_46329 DeepMRMD:0.84780686;iRNA_m5C:2.22044604925031e-16 46330 chr5 33937421 33937421 1 + G T LUSC 33937418 + 33937398 33937438 41 GCCTCGGCTCTGAAGAGCCACCGGACCCGAGGACACGGCCG GCCTCGGCTCTGAAGAGCCACCGTACCCGAGGACACGGCCG < 41bp 0.862076021911104 0.529708292675767 0.35686862 0.2102237 prediction 0.664735458470674 Functional Loss - RXFP3 ENSG00000182631 CDS Human protein_coding chr5:33937418 chr5:33937421 synonymous SNV . 0 24 hm5C_associated_SNPs_50978 0 0 0 0 0 unknown 0.500232028487692 0.500231643953563 0 7.69068258854588e-07 hm5C_site_46330 DeepMRMD:0;iRNA_m5C:7.69068258854588e-07 46331 chr20 62837011 62837011 1 + G T UCEC 62837008 + 62836988 62837028 41 CCCCTGAAGCTGGCTCTGGACGAGGGCTATGGTGTGGACAG CCCCTGAAGCTGGCTCTGGACGATGGCTATGGTGTGGACAG < 41bp 0.832366100837207 0.461636065879335 0.8848449 0.13464987 prediction 0.664732201674413 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62837008 chr20:62837011 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_50979 0 0 0 0 0 exosome 0.500231643943449 0.500231643921092 0.7696898 4.47137882275683e-11 hm5C_site_46331 DeepMRMD:0.7696898;iRNA_m5C:4.47137882275683e-11 46332 chr1 17597382 17597382 1 + G T ESCA 17597379 + 17597359 17597399 41 GGTCTGCCCCTGCAGGATTTCTCGGCATCCCCTATCTTCAC GGTCTGCCCCTGCAGGATTTCTCTGCATCCCCTATCTTCAC < 41bp 0.832365794470152 0.475206958072642 0.19305539 0.12505805 prediction 0.664731588940304 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17597379 chr1:17597382 synonymous SNV . 0 24 hm5C_associated_SNPs_50980 0 0 0 0 2 unknown 0.500231643919772 0.500231643921092 0 0 hm5C_site_46332 DeepMRMD:0;iRNA_m5C:0 46333 chr7 27285690 27285690 1 + A C rs114407231 27285686 + 27285666 27285706 41 CTCGCCGGTGGGCCTGGGCGCCGCATCCGCCGCCTCCGCCG CTCGCCGGTGGGCCTGGGCGCCGCCTCCGCCGCCTCCGCCG < 41bp 0.832361610373106 0.485571775776863 0.8544555 0.63951224 prediction 0.664723220746212 Functional Loss - EVX1 ENSG00000106038 CDS Human protein_coding chr7:27285686 chr7:27285690 synonymous SNV . 0 25 hm5C_associated_SNPs_50981 0 0 0 0 0 unknown 0.500231643921187 0.500231643920738 0.42988652 8.97282248502052e-13 hm5C_site_46333 DeepMRMD:0.42988652;iRNA_m5C:8.97282248502052e-13 46334 chr2 131129679 131129679 1 + A C rs2271784 131129675 + 131129655 131129695 41 CTTGCAGGGCGCTAGGGACACAGAAGCGAGGCCTCCAACCC CTTGCAGGGCGCTAGGGACACAGACGCGAGGCCTCCAACCC < 41bp 0.832349282292215 0.485847153996523 0.26610315 0.26754856 prediction 0.664698564584429 Functional Loss - PTPN18 ENSG00000072135 intronic Human protein_coding chr2:131129675 chr2:131129679 . . 0 25 hm5C_associated_SNPs_50982 0 0 0 0 0 Cytosol 0.500231643921093 0.500231643921101 0 0 hm5C_site_46334 DeepMRMD:0;iRNA_m5C:0 46335 chr19 50154183 50154183 1 + G T LUAD 50154180 + 50154160 50154200 41 GCCCGTCACCTCACCTTGGGCACGGGAGACGGGGGCCCTGC GCCCGTCACCTCACCTTGGGCACTGGAGACGGGGGCCCTGC < 41bp 0.832323751778046 0.476599713024118 0.7218919 0.26334205 prediction 0.664647503556093 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50154180 chr19:50154183 synonymous SNV . 0 24 hm5C_associated_SNPs_50983 0 0 1 0 1 Cytosol 0.500231643918455 0.500231643920279 0.4437838 0 hm5C_site_46335 DeepMRMD:0.4437838;iRNA_m5C:0 46336 chr3 190106119 190106119 1 + A C UCEC 190106115 + 190106095 190106135 41 CATCCTGATGGGCTGCTTGCCACAATGAGGGATCTTCTTCA CATCCTGATGGGCTGCTTGCCACACTGAGGGATCTTCTTCA < 41bp 0.832320077359984 0.463532732875384 0.046200395 0.06903577 prediction 0.664640154719968 Functional Loss - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190106115 chr3:190106119 nonsynonymous SNV 0.436 3 25 hm5C_associated_SNPs_50984 0 0 0 0 0 exosome 0.500231642968465 0.500231640054873 0 5.82718473474131e-09 hm5C_site_46336 DeepMRMD:0;iRNA_m5C:5.82718473474131e-09 46337 chr17 42979990 42979990 1 + G T LUSC 42979987 + 42979967 42980007 41 GCGAGCACTGGGCGCTTCACCCTGAACCTAAGCCTGCTGAG GCGAGCACTGGGCGCTTCACCCTTAACCTAAGCCTGCTGAG < 41bp 0.848475971869143 0.516162152846614 0.26867348 0.15634987 prediction 0.664627638045058 Functional Loss - CCDC103 ENSG00000167131 CDS Human protein_coding chr17:42979987 chr17:42979990 synonymous SNV . 0 24 hm5C_associated_SNPs_50985 0 0 0 0 0 exosome 0.500231643769374 0.500231643921214 0 0 hm5C_site_46337 DeepMRMD:0;iRNA_m5C:0 46338 chr19 50905324 50905324 1 + G T BLCA 50905321 + 50905301 50905341 41 TGGCCATCAGCCGGGACAGTCGCGGGGGGAGGGAGCTGACT TGGCCATCAGCCGGGACAGTCGCTGGGGGAGGGAGCTGACT < 41bp 0.832308247397092 0.471483052565467 0.92644584 0.74246 prediction 0.664616494794183 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905321 chr19:50905324 nonsynonymous SNV 0.021 2 24 hm5C_associated_SNPs_50986 0 0 1 0 1 Nucleus 0.500230014449469 0.500231643921069 0.36797168 0 hm5C_site_46338 DeepMRMD:0.36797168;iRNA_m5C:0 White blood cell count 46339 chr20 62839147 62839147 1 + G T LUAD 62839144 + 62839124 62839164 41 CTGGCATTGTGCACCTGCTTCAGGAGGCTGCAGAGGGAGCT CTGGCATTGTGCACCTGCTTCAGTAGGCTGCAGAGGGAGCT < 41bp 0.832291509209754 0.468715992000083 0.8774483 0.55012983 prediction 0.664583018419507 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62839144 chr20:62839147 stopgain 0.917 0 24 hm5C_associated_SNPs_50987 0 0 0 0 0 exosome 0.500231643921232 0.500231643921854 0.65463694 0 hm5C_site_46339 DeepMRMD:0.65463694;iRNA_m5C:0 46340 chr1 248039361 248039361 1 + G T LUAD 248039358 + 248039338 248039378 41 GGGTTTGCAGAGCTTCTCATCAGGGAGGCATTACTGGGAGG GGGTTTGCAGAGCTTCTCATCAGTGAGGCATTACTGGGAGG < 41bp 0.832275336027161 0.458204488627673 0.9324913 0.2793674 prediction 0.664550672054321 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039358 chr1:248039361 nonsynonymous SNV 0.141 5 24 hm5C_associated_SNPs_50988 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.8649826 1.55431223447522e-15 hm5C_site_46340 DeepMRMD:0.8649826;iRNA_m5C:1.55431223447522e-15 46341 chr2 71303782 71303782 1 + G T SARC 71303779 + 71303759 71303799 41 CCGCTATATCTTCAGGAAGGCTGGGGAGATGCTGGGCAGAC CCGCTATATCTTCAGGAAGGCTGTGGAGATGCTGGGCAGAC < 41bp 0.832264307831012 0.471340252343288 0.7915168 0.2020947 prediction 0.664528615662025 Functional Loss - NAGK ENSG00000124357 CDS Human protein_coding chr2:71303779 chr2:71303782 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_50989 0 0 1 1 2 chromatin 0.500231643921093 0.500231643921092 0.5830336 2.22044604925031e-16 hm5C_site_46341 DeepMRMD:0.5830336;iRNA_m5C:2.22044604925031e-16 46342 chr13 46288501 46288501 1 + G T HNSC 46288498 + 46288478 46288518 41 CAGGACCCCAAGAAGCCTAGCAGGGTCTGAGGCCTCGGCCT CAGGACCCCAAGAAGCCTAGCAGTGTCTGAGGCCTCGGCCT < 41bp 0.871099822371608 0.538841237430804 0.91251636 0.7965536 prediction 0.664517169881608 Functional Loss - SPERT ENSG00000174015 CDS Human protein_coding chr13:46288498 chr13:46288501 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_50990 0 0 0 0 0 exosome 0.500231643921098 0.500231647583243 0.23192552 0 hm5C_site_46342 DeepMRMD:0.23192552;iRNA_m5C:0 46343 chr7 65705680 65705680 1 + G T KIRC 65705677 + 65705657 65705697 41 CCACACTCATGAGGGCCATGCTGGACGCACATCCTGACATT CCACACTCATGAGGGCCATGCTGTACGCACATCCTGACATT < 41bp 0.855275960143985 0.523021861119079 0.89941835 0.22170967 prediction 0.664508198049812 Functional Loss - TPST1 ENSG00000169902 CDS Human protein_coding chr7:65705677 chr7:65705680 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_50991 0 0 1 0 0 nucleoplasm 0.500231564527631 0.500231644769131 0.7988367 0 hm5C_site_46343 DeepMRMD:0.7988367;iRNA_m5C:0 46344 chr2 224822298 224822298 1 + G T rs143105143 224822295 + 224822275 224822315 41 GGGGAGTGAAGAAGGGATTCCGCGCCGCCTTCCGCTTCCAG GGGGAGTGAAGAAGGGATTCCGCTCCGCCTTCCGCTTCCAG < 41bp 0.847364450647672 0.51511037957508 0.37385672 0.2226947 prediction 0.664508142145185 Functional Loss - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224822295 chr2:224822298 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_50992 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0 6.66133814775094e-16 hm5C_site_46344 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 46345 chr10 101090082 101090082 1 + G T UCEC 101090079 + 101090059 101090099 41 GCCGCCGGGCTTCGGGGGCACCGGGGAAGACTACAGCGAAG GCCGCCGGGCTTCGGGGGCACCGTGGAAGACTACAGCGAAG < 41bp 0.867257266804163 0.535003339855444 0.91760135 0.439561 prediction 0.664507853897438 Functional Loss - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101090079 chr10:101090082 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_50993 0 0 0 0 0 cytosol 0.500231643921092 0.500231643970147 0.8352027 0 hm5C_site_46345 DeepMRMD:0.8352027;iRNA_m5C:0 46346 chr1 159166231 159166231 1 + C A LUSC 159166234 - 159166214 159166254 41 ATCTTCTTACACTGGATTGCCGCGACCCTCACAGTGTAGCA ATCTTCTTACACTGGATTGCCGCTACCCTCACAGTGTAGCA < 41bp 0.832240126143622 0.487161104560295 0.0870049 0.03670031 prediction 0.664480252287244 Functional Loss - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159166234 chr1:159166231 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_50994 0 0 0 0 0 exosome 0.500231643921075 0.500231643838353 0 1.65444102862011e-10 hm5C_site_46346 DeepMRMD:0;iRNA_m5C:1.65444102862011e-10 46347 chr6 167717473 167717473 1 + A C rs34957443 167717469 + 167717449 167717489 41 AACCCATACGAGATGTTCAGCGGGAAAGTGAAGGAGAGAAG AACCCATACGAGATGTTCAGCGGGCAAGTGAAGGAGAGAAG < 41bp 0.85900559664559 0.526775035313282 0.8952362 0.91939545 prediction 0.664461122664615 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167717469 chr6:167717473 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_50995 0 0 0 0 1 cytosol 0.500231643924439 0.500231643921368 0 6.14286399525099e-12 hm5C_site_46347 DeepMRMD:0;iRNA_m5C:6.14286399525099e-12 46348 chr19 19638848 19638848 1 + G T LUSC 19638845 + 19638825 19638865 41 TCTGTGTTCCACACAACCCGCTGGGTGCCCCCCTTGATCGG TCTGTGTTCCACACAACCCGCTGTGTGCCCCCCTTGATCGG < 41bp 0.865652144747154 0.533437890404059 0.75207937 0.25774115 prediction 0.664428508686191 Functional Loss - NDUFA13 ENSG00000186010 CDS Human protein_coding chr19:19638845 chr19:19638848 nonsynonymous SNV 0.437 4 24 hm5C_associated_SNPs_50996 0 0 1 0 2 Endoplasmic reticulum 0.500231649115709 0.500231643921092 0.50415874 1.0389233917607e-08 hm5C_site_46348 DeepMRMD:0.50415874;iRNA_m5C:1.0389233917607e-08 46349 chr3 12544841 12544841 1 + A C rs142211875 12544837 + 12544817 12544857 41 AGAGTACAGTGCGCAGAATCCTCAAGGATTACACGAAACCG AGAGTACAGTGCGCAGAATCCTCACGGATTACACGAAACCG < 41bp 0.832151407484074 0.435955388825277 0.040753186 0.04060313 prediction 0.664302814968148 Functional Loss - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12544837 chr3:12544841 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_50997 3 0 0 0 1 Nucleus 0.500231643921 0.500231643915385 0 1.1231238161713e-11 hm5C_site_46349 DeepMRMD:0;iRNA_m5C:1.1231238161713e-11 Pontocerebellar hypoplasia type 2B Pontocerebellar hypoplasia type 2B 46350 chr3 45077068 45077068 1 + G T UCEC 45077065 + 45077045 45077085 41 AAATGCTTTCTGGCCTTCACCCAGACGAAGACCTTCCACGA AAATGCTTTCTGGCCTTCACCCATACGAAGACCTTCCACGA < 41bp 0.832150702645782 0.487790752030975 0.17941442 0.020527005 prediction 0.664301405291565 Functional Loss - CLEC3B ENSG00000163815 CDS Human protein_coding chr3:45077065 chr3:45077068 nonsynonymous SNV 0.379 0 24 hm5C_associated_SNPs_50998 0 0 0 0 1 Cytosol 0.500231643921362 0.500231632328813 0 2.31850991738725e-08 hm5C_site_46350 DeepMRMD:0;iRNA_m5C:2.31850991738725e-08 46351 chr16 15528552 15528552 1 + G T UCEC 15528549 + 15528529 15528569 41 TTGTCCACCCATCTGGAAGCCGAGAAGCCTCTGAGGCGCTA TTGTCCACCCATCTGGAAGCCGATAAGCCTCTGAGGCGCTA < 41bp 0.83514818179336 0.503020832986798 0.5578094 0.24058002 prediction 0.664254697613126 Functional Loss - C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15528549 chr16:15528552 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_50999 0 0 0 0 1 Cytosol 0.500231643921098 0.500231643920109 0.1156188 1.97797334067218e-12 hm5C_site_46351 DeepMRMD:0.1156188;iRNA_m5C:1.97797334067218e-12 46352 chr11 26538464 26538464 1 + A C SKCM 26538460 + 26538440 26538480 41 TATGCAGAGAGGCTGAATATCAGGATGCCCTTCAGGTACTT TATGCAGAGAGGCTGAATATCAGGCTGCCCTTCAGGTACTT < 41bp 0.839384205999371 0.507261154593415 0.85415184 0.8643805 prediction 0.664246102811912 Functional Loss - ANO3 ENSG00000134343 CDS Human protein_coding chr11:26538460 chr11:26538464 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51000 0 0 0 0 2 Endoplasmic reticulum 0.500231643929746 0.500231643921107 0 1.72779568430315e-11 hm5C_site_46352 DeepMRMD:0;iRNA_m5C:1.72779568430315e-11 46353 chr1 207010134 207010134 1 + G T UCEC 207010131 + 207010111 207010151 41 ACCATATAGAAGAGAGTTTCCAAGAAATCAAAAGAGCCATC ACCATATAGAAGAGAGTTTCCAATAAATCAAAAGAGCCATC < 41bp 0.832117677754651 0.490464668161363 0.2143774 0.0479877 prediction 0.664235355509302 Functional Loss - IL19 ENSG00000142224 CDS Human protein_coding chr1:207010131 chr1:207010134 stopgain 0.998 0 24 hm5C_associated_SNPs_51001 0 0 0 0 1 exosome 0.500231469265118 0.500231643875724 0 0 hm5C_site_46353 DeepMRMD:0;iRNA_m5C:0 46354 chr1 3680308 3680308 1 + G T UCEC 3680305 + 3680285 3680325 41 TACAACAACAAGTGGATTTCCAAGAAACCCAGCTGCGAAAG TACAACAACAAGTGGATTTCCAATAAACCCAGCTGCGAAAG < 41bp 0.858113778923676 0.525998802925637 0.36131912 0.122773826 prediction 0.664229951996077 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3680305 chr1:3680308 stopgain 0.044 0 24 hm5C_associated_SNPs_51002 0 0 0 0 2 exosome 0.500231643854673 0.500231593938824 0 9.98316989075931e-08 hm5C_site_46354 DeepMRMD:0;iRNA_m5C:9.98316989075931e-08 46355 chr19 58153284 58153284 1 + G T LUAD 58153281 + 58153261 58153301 41 GAACCACCAGAGAGTTCACACTGGAGAAAGACCTGTTGAGT GAACCACCAGAGAGTTCACACTGTAGAAAGACCTGTTGAGT < 41bp 0.841049856384417 0.508961933402975 0.25985628 0.055302978 prediction 0.664175845962885 Functional Loss - ZNF211 ENSG00000121417 CDS Human protein_coding chr19:58153281 chr19:58153284 nonsynonymous SNV 0.960 3 24 hm5C_associated_SNPs_51003 0 0 1 0 0 cytosol 0.500231643940459 0.500231643268009 0 1.34489930303516e-09 hm5C_site_46355 DeepMRMD:0;iRNA_m5C:1.34489930303516e-09 46356 chr14 74823689 74823689 1 + A C rs140246685 74823685 + 74823665 74823705 41 CGGTGGCCCTGAGCCTGTATCCAGAAGATGCTCCACGGAAC CGGTGGCCCTGAGCCTGTATCCAGCAGATGCTCCACGGAAC < 41bp 0.832082806532143 0.472667962438578 0.85782826 0.39868137 prediction 0.664165613064287 Functional Loss - VRTN ENSG00000133980 CDS Human protein_coding chr14:74823685 chr14:74823689 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_51004 0 0 0 0 0 unknown 0.500218792697025 0.50023169312336 0.71565652 0 hm5C_site_46356 DeepMRMD:0.71565652;iRNA_m5C:0 46357 chr9 35736644 35736644 1 + A C LGG 35736640 + 35736620 35736660 41 GCCGAGGTCCCATCCTCCCCCTGCAGGCAAATCTCACAAGG GCCGAGGTCCCATCCTCCCCCTGCCGGCAAATCTCACAAGG < 41bp 0.873816025389095 0.541745863795806 0.06735331 0.046728343 prediction 0.664140323186577 Functional Loss - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35736640 chr9:35736644 nonsynonymous SNV 0.796 1 25 hm5C_associated_SNPs_51005 0 0 0 0 0 Endoplasmic reticulum 0.500231643693324 0.500231643921092 0 0 hm5C_site_46357 DeepMRMD:0;iRNA_m5C:0 46358 chr16 57054865 57054865 1 + G T CESC 57054862 + 57054842 57054882 41 TTCATTGTGTGTGCATGCAGCTGGAGGTGCCTCTGGACCTG TTCATTGTGTGTGCATGCAGCTGTAGGTGCCTCTGGACCTG < 41bp 0.838460417338925 0.506391175597654 0.5533135 0.3649559 prediction 0.664138483482543 Functional Loss - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57054862 chr16:57054865 stopgain 0.966 0 24 hm5C_associated_SNPs_51006 0 0 0 0 1 Ribosome 0.500232295030717 0.500241957240038 0.106627 0 hm5C_site_46358 DeepMRMD:0.106627;iRNA_m5C:0 46359 chr2 130948186 130948186 1 + G T LUAD 130948183 + 130948163 130948203 41 CGGGCCTGGGAAGAGCCCTACACGGGGCAGCACCTAGGATG CGGGCCTGGGAAGAGCCCTACACTGGGCAGCACCTAGGATG < 41bp 0.854726832786344 0.5226641987509 0.63469803 0.26053956 prediction 0.664125268070887 Functional Loss - MZT2B ENSG00000152082 CDS Human protein_coding chr2:130948183 chr2:130948186 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_51007 0 0 1 0 0 Ribosome 0.50023164392112 0.500231643921104 0.26939606 3.04201108747293e-14 hm5C_site_46359 DeepMRMD:0.26939606;iRNA_m5C:3.04201108747293e-14 46360 chrX 119509292 119509292 1 + G T BLCA 119509289 + 119509269 119509309 41 CCCCGGGGCAGTACTTCATCCAAGATGGCAATGAGGATGAG CCCCGGGGCAGTACTTCATCCAATATGGCAATGAGGATGAG < 41bp 0.832030239468585 0.48431063493961 0.14001039 0.03608367 prediction 0.66406047893717 Functional Loss - ATP1B4 ENSG00000101892 CDS Human protein_coding chrX:119509289 chrX:119509292 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_51008 0 0 0 0 1 Nucleus 0.500231643921096 0.500231643921095 0 1.99840144432528e-15 hm5C_site_46360 DeepMRMD:0;iRNA_m5C:1.99840144432528e-15 46361 chr7 140373277 140373277 1 + G T ESCA 140373274 + 140373254 140373294 41 CTTCTGCTGGGCACTTTGCCCAAGGTCGTCTCCCTGTGCGG CTTCTGCTGGGCACTTTGCCCAATGTCGTCTCCCTGTGCGG < 41bp 0.870509332637318 0.53847998914104 0.885471 0.11707413 prediction 0.664058686992555 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140373274 chr7:140373277 nonsynonymous SNV 0.108 1 24 hm5C_associated_SNPs_51009 0 0 0 0 0 Ribosome 0.500231643921093 0.500231644123806 0.770942 0 hm5C_site_46361 DeepMRMD:0.770942;iRNA_m5C:0 46362 chr1 158449773 158449773 1 + G T OV 158449770 + 158449750 158449790 41 TGGTCACCGAATTCCTGTTGCTGGGTTTTTCCAGCCTTGGT TGGTCACCGAATTCCTGTTGCTGTGTTTTTCCAGCCTTGGT < 41bp 0.843474452747619 0.511462722297738 0.2933725 0.05376336 prediction 0.664023460899761 Functional Loss - OR10R2 ENSG00000198965 CDS Human protein_coding chr1:158449770 chr1:158449773 nonsynonymous SNV 0.205 3 24 hm5C_associated_SNPs_51010 0 0 0 0 0 unknown 0.500231919709365 0.50023164400281 0 5.51413109173282e-07 hm5C_site_46362 DeepMRMD:0;iRNA_m5C:5.51413109173282e-07 46363 chr13 96205183 96205183 1 + G T SARC 96205180 + 96205160 96205200 41 GGCGTGCGTTACCGACTCCACGGGCGTCTCCAACTGCAAGG GGCGTGCGTTACCGACTCCACGGTCGTCTCCAACTGCAAGG < 41bp 0.832006555497953 0.486512420489579 0.18421721 0.017100602 prediction 0.664013110995905 Functional Loss - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96205180 chr13:96205183 nonsynonymous SNV 0.954 5 24 hm5C_associated_SNPs_51011 0 0 0 0 1 Endoplasmic reticulum 0.500231236761829 0.500231643921325 0 0 hm5C_site_46363 DeepMRMD:0;iRNA_m5C:0 46364 chr11 66190307 66190307 1 + G T UCEC 66190304 + 66190284 66190324 41 TTTCTGTGCCCCTCTGGAGCCGAGACCCCGCCCAGGTCCTG TTTCTGTGCCCCTCTGGAGCCGATACCCCGCCCAGGTCCTG < 41bp 0.862949999636772 0.530968968896554 0.21672702 0.06478664 prediction 0.663962061480435 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190304 chr11:66190307 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_51012 0 0 0 0 0 unknown 0.50023164392098 0.500231643921092 0 0 hm5C_site_46364 DeepMRMD:0;iRNA_m5C:0 46365 chr6 32609230 32609230 1 + A C rs1048052 32609226 + 32609206 32609246 41 GCCTGGCGGTGGCCTGAGTTCAGCAAATTTGGAGGTTTTGA GCCTGGCGGTGGCCTGAGTTCAGCCAATTTGGAGGTTTTGA < 41bp 0.882490887544151 0.550541673438131 0.89568806 0.88986456 prediction 0.663898428212039 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609226 chr6:32609230 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_51013 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.011647 0 hm5C_site_46365 DeepMRMD:0.011647;iRNA_m5C:0 46366 chr22 35463113 35463113 1 + G T LUSC 35463110 + 35463090 35463130 41 GAGGTGGGCCCTGCTCTCTGCAGGGGTATGGAGAGAAATAG GAGGTGGGCCCTGCTCTCTGCAGTGGTATGGAGAGAAATAG < 41bp 0.831948642535189 0.485370384751461 0.90120894 0.4506895 prediction 0.663897285070377 Functional Loss - ISX ENSG00000175329 CDS Human protein_coding chr22:35463110 chr22:35463113 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_51014 0 0 0 0 0 chromatin 0.500231643927026 0.500231643889172 0.80241788 7.57069962276091e-11 hm5C_site_46366 DeepMRMD:0.80241788;iRNA_m5C:7.57069962276091e-11 46367 chrX 101822173 101822173 1 + G T UCEC 101822170 + 101822150 101822190 41 TCCCCAGGCTGGGCTTACTCCAAGAACTCTCTCAGCTTCCC TCCCCAGGCTGGGCTTACTCCAATAACTCTCTCAGCTTCCC < 41bp 0.854588704133035 0.522643428451733 0.26333022 0.03201464 prediction 0.663890551362605 Functional Loss - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101822170 chrX:101822173 . . 0 24 hm5C_associated_SNPs_51015 0 0 0 0 0 unknown 0.500231644013724 0.500231666919765 0 0 hm5C_site_46367 DeepMRMD:0;iRNA_m5C:0 46368 chr5 140076836 140076836 1 + G T SARC 140076833 + 140076813 140076853 41 TGCTGCTGCAGACCCCAACTCAGGCTGGGGAGGAGCCCCTG TGCTGCTGCAGACCCCAACTCAGTCTGGGGAGGAGCCCCTG < 41bp 0.831943956003042 0.469586572668436 0.7921563 0.18645102 prediction 0.663887912006083 Functional Loss - HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076833 chr5:140076836 nonsynonymous SNV 0.940 0 24 hm5C_associated_SNPs_51016 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.5843126 0 hm5C_site_46368 DeepMRMD:0.5843126;iRNA_m5C:0 46369 chr2 187626597 187626597 1 + G T LUAD 187626594 + 187626574 187626614 41 CTTCATCTCTAGGTGATGCTCAAGATGAAAAGAGGTATCTC CTTCATCTCTAGGTGATGCTCAATATGAAAAGAGGTATCTC < 41bp 0.840898271029238 0.508988988659997 0.31923956 0.15796977 prediction 0.663818564738482 Functional Loss - FAM171B ENSG00000144369 CDS Human protein_coding chr2:187626594 chr2:187626597 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51017 0 0 0 0 0 nucleoplasm 0.500231643921156 0.50023164382892 0 1.84470883013432e-10 hm5C_site_46369 DeepMRMD:0;iRNA_m5C:1.84470883013432e-10 46370 chr1 212799739 212799739 1 + A C BLCA 212799735 + 212799715 212799755 41 CAAAGGAGTCCAGGACCTCTCACAAATCTGGGAGGAGCTTA CAAAGGAGTCCAGGACCTCTCACACATCTGGGAGGAGCTTA < 41bp 0.831905758787144 0.463946103377256 0.10832372 0.024807781 prediction 0.663811517574287 Functional Loss - FAM71A ENSG00000162771 CDS Human protein_coding chr1:212799735 chr1:212799739 nonsynonymous SNV 0.013 2 25 hm5C_associated_SNPs_51018 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46370 DeepMRMD:0;iRNA_m5C:0 46371 chr11 126146398 126146398 1 + G T SARC 126146395 + 126146375 126146415 41 AAGGATTAGGTAGCAACTACCTAGGTGGTCGTAGCCCCACT AAGGATTAGGTAGCAACTACCTATGTGGTCGTAGCCCCACT < 41bp 0.83188953212676 0.478740259363653 0.79703915 0.19564775 prediction 0.66377906425352 Functional Loss - FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126146395 chr11:126146398 nonsynonymous SNV 0.990 2 24 hm5C_associated_SNPs_51019 0 0 1 0 1 Ribosome 0.50023164392109 0.50023164393592 0.5940783 0 hm5C_site_46371 DeepMRMD:0.5940783;iRNA_m5C:0 46372 chr7 106508280 106508280 1 + G T LUSC 106508277 + 106508257 106508297 41 CGGCGGACTTCTACCACCGGCTGGGACCGCATCACTTCCTC CGGCGGACTTCTACCACCGGCTGTGACCGCATCACTTCCTC < 41bp 0.831877672022916 0.463150966034334 0.43818814 0.36511362 prediction 0.663755344045833 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508277 chr7:106508280 stopgain 0.006 0 24 hm5C_associated_SNPs_51020 0 0 1 0 0 Cytosol 0.500231644074672 0.500231643928084 0 2.9317637206816e-10 hm5C_site_46372 DeepMRMD:0;iRNA_m5C:2.9317637206816e-10 46373 chr8 66605988 66605988 1 + G T UCEC 66605985 + 66605965 66606005 41 AGAAGAAGGAGAGTGTTCAGCAAGACTAAGGTTAGTTTGGA AGAAGAAGGAGAGTGTTCAGCAATACTAAGGTTAGTTTGGA < 41bp 0.831817659316235 0.494871770518232 0.4304084 0.30510676 prediction 0.663635318632471 Functional Loss - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66605985 chr8:66605988 nonsynonymous SNV 0.425 3 24 hm5C_associated_SNPs_51021 0 0 1 0 1 Cytosol 0.500231643946048 0.500231643921127 0 4.9841686333707e-11 hm5C_site_46373 DeepMRMD:0;iRNA_m5C:4.9841686333707e-11 46374 chr15 57924714 57924714 1 + A C rs147301839 57924710 + 57924690 57924730 41 ACAGCCAGTATGAGGAGAAGCTGCAGGAAGAACAGAGGAAG ACAGCCAGTATGAGGAGAAGCTGCCGGAAGAACAGAGGAAG < 41bp 0.831813511971505 0.448441565671651 0.33506382 0.20104864 prediction 0.66362702394301 Functional Loss - GCOM1;MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57924710 chr15:57924714 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_51022 0 1 0 0 2 unknown 0.500231643919537 0.500231649103858 0 0 hm5C_site_46374 DeepMRMD:0;iRNA_m5C:0 46375 chr7 150389570 150389570 1 + G T LUAD 150389567 + 150389547 150389587 41 CTAAGACTTGCAGCAAAAGTCAGGGAAGCTGGGGAAATAGA CTAAGACTTGCAGCAAAAGTCAGTGAAGCTGGGGAAATAGA < 41bp 0.839285793405597 0.507481793591534 0.8837465 0.15856305 prediction 0.663607999628127 Functional Loss - GIMAP2 ENSG00000106560 CDS Human protein_coding chr7:150389567 chr7:150389570 stopgain 0.001 0 24 hm5C_associated_SNPs_51023 0 0 0 0 0 exosome 0.500231451702608 0.50023164945266 0.767493 0 hm5C_site_46375 DeepMRMD:0.767493;iRNA_m5C:0 46376 chr12 73046155 73046155 1 + A C SKCM 73046151 + 73046131 73046171 41 ACTGTACAGGAGTGTCACTACTGGATGAGGATGTCTGGGAA ACTGTACAGGAGTGTCACTACTGGCTGAGGATGTCTGGGAA < 41bp 0.831800791611598 0.471302801402895 0.21656144 0.13639227 prediction 0.663601583223197 Functional Loss - TRHDE ENSG00000072657 CDS Human protein_coding chr12:73046151 chr12:73046155 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51024 0 0 0 0 1 exosome 0.500231643921092 0.500231643921112 0 0 hm5C_site_46376 DeepMRMD:0;iRNA_m5C:0 46377 chr3 10916719 10916719 1 + G T LUSC 10916716 + 10916696 10916736 41 GATACGAGGGGTCACGTTGCCCGGGGCCTCAGAGGGCATCA GATACGAGGGGTCACGTTGCCCGTGGCCTCAGAGGGCATCA < 41bp 0.851133560179591 0.519348685574569 0.89077604 0.13239759 prediction 0.663569749210043 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10916716 chr3:10916719 nonsynonymous SNV 0.559 5 24 hm5C_associated_SNPs_51025 0 0 1 0 2 cytosol 0.500231643921093 0.500231637762507 0.78155208 1.23171703947378e-08 hm5C_site_46377 DeepMRMD:0.78155208;iRNA_m5C:1.23171703947378e-08 46378 chr10 105046867 105046867 1 + G T READ 105046864 + 105046844 105046884 41 CACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAA CACGCCACCTTCGGGAATACCAGTACTTGCTCAATGTCAAA < 41bp 0.831774848610158 0.470643963175354 0.8978083 0.7587888 prediction 0.663549697220316 Functional Loss - INA ENSG00000148798 CDS Human protein_coding chr10:105046864 chr10:105046867 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51026 0 0 0 0 2 exosome 0.500231658581953 0.500231643831158 0.278039 2.95015880613647e-08 hm5C_site_46378 DeepMRMD:0.278039;iRNA_m5C:2.95015880613647e-08 46379 chr8 123965503 123965503 1 + G T LUSC 123965500 + 123965480 123965520 41 TCTCGGAGAGGCGGAAGCTTCGAGACAGCATGGAACAAGCT TCTCGGAGAGGCGGAAGCTTCGATACAGCATGGAACAAGCT < 41bp 0.842566077723023 0.510812332321305 0.44287473 0.0722951 prediction 0.663507490803438 Functional Loss - ZHX2 ENSG00000178764 CDS Human protein_coding chr8:123965500 chr8:123965503 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_51027 0 0 1 0 0 Nucleus 0.500231644244898 0.500231644123343 0 2.43109976594269e-10 hm5C_site_46379 DeepMRMD:0;iRNA_m5C:2.43109976594269e-10 46380 chr19 41903836 41903836 1 + G T BLCA 41903833 + 41903813 41903853 41 GCCTGGGGCTCGGGGACTGGCTAGATCTGTGAGTACCTGGG GCCTGGGGCTCGGGGACTGGCTATATCTGTGAGTACCTGGG < 41bp 0.845777294713961 0.514035121355146 0.8889307 0.8961381 prediction 0.663484346717629 Functional Loss - BCKDHA ENSG00000248098 CDS Human protein_coding chr19:41903833 chr19:41903836 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_51028 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_46380 DeepMRMD:0;iRNA_m5C:0 46381 chr2 219294587 219294587 1 + G T UCEC 219294584 + 219294564 219294604 41 GACTCTAGGACTGTTACATCCTGGACCAGGGGGGCCTGAAG GACTCTAGGACTGTTACATCCTGTACCAGGGGGGCCTGAAG < 41bp 0.831736138591121 0.469423115875992 0.07891658 0.023848772 prediction 0.663472277182242 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219294584 chr2:219294587 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51029 0 0 1 0 2 Nucleus 0.500231643920933 0.500231643921092 0 0 hm5C_site_46381 DeepMRMD:0;iRNA_m5C:0 46382 chr17 263714 263714 1 + G T COAD 263711 + 263691 263731 41 AAGGGCTTCCACCCCGACCCCGAGGCCCTCAAGGGCTTCCA AAGGGCTTCCACCCCGACCCCGATGCCCTCAAGGGCTTCCA < 41bp 0.831692648996481 0.468802578054351 0.7325069 0.2348504 prediction 0.663385297992962 Functional Loss - C17orf97 ENSG00000187624 CDS Human protein_coding chr17:263711 chr17:263714 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_51030 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0.4650138 0 hm5C_site_46382 DeepMRMD:0.4650138;iRNA_m5C:0 46383 chr8 69104676 69104676 1 + G T SARC 69104673 + 69104653 69104693 41 AAACACAGCTTGCAGTGCTTCTGGGGTTGGACTGCTGTCAG AAACACAGCTTGCAGTGCTTCTGTGGTTGGACTGCTGTCAG < 41bp 0.83168911591952 0.492836833199848 0.6763629 0.06847215 prediction 0.66337823183904 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69104673 chr8:69104676 nonsynonymous SNV 0.666 4 24 hm5C_associated_SNPs_51031 0 0 0 0 1 Nucleus 0.500238228751242 0.500221988648882 0.3527258 3.2480204719576e-05 hm5C_site_46383 DeepMRMD:0.3527258;iRNA_m5C:3.2480204719576e-05 46384 chr12 96640729 96640729 1 + G T UCEC 96640726 + 96640706 96640746 41 TTGTATTTGCAGAACATCATCAAGAAGGTGATCGGGCAGAA TTGTATTTGCAGAACATCATCAATAAGGTGATCGGGCAGAA < 41bp 0.831674261148661 0.48809568481537 0.46612707 0.066551 prediction 0.663348522297323 Functional Loss - ELK3 ENSG00000111145 CDS Human protein_coding chr12:96640726 chr12:96640729 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51032 0 0 0 0 1 Nucleus 0.50023164377668 0.500231643921098 0 0 hm5C_site_46384 DeepMRMD:0;iRNA_m5C:0 46385 chr16 68330713 68330713 1 + G T STAD 68330710 + 68330690 68330730 41 CATTGTTTATTCGGAATGTCCTGGGTGAGCTTCTCTGTGCC CATTGTTTATTCGGAATGTCCTGTGTGAGCTTCTCTGTGCC < 41bp 0.831665020776519 0.475771986983475 0.9014658 0.19264549 prediction 0.663330041553039 Functional Loss - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68330710 chr16:68330713 nonsynonymous SNV 0.974 1 24 hm5C_associated_SNPs_51033 0 0 1 0 1 Ribosome 0.50023164226025 0.500231644048926 0.8029316 0 hm5C_site_46385 DeepMRMD:0.8029316;iRNA_m5C:0 46386 chr19 18474655 18474655 1 + G T rs151086105 18474652 + 18474632 18474672 41 CCGTGACCAGGGAGGCCAGCCTGGGAGGTCCAGATGCCCAG CCGTGACCAGGGAGGCCAGCCTGTGAGGTCCAGATGCCCAG < 41bp 0.831662239195606 0.489543274975929 0.6942425 0.2946197 prediction 0.663324478391213 Functional Loss - PGPEP1 ENSG00000130517 UTR3 Human protein_coding chr19:18474652 chr19:18474655 . . 0 24 hm5C_associated_SNPs_51034 0 0 1 0 0 Nucleus 0.500231643926092 0.500231643921086 0.388485 1.00124353252795e-11 hm5C_site_46386 DeepMRMD:0.388485;iRNA_m5C:1.00124353252795e-11 46387 chr19 50436122 50436122 1 + G T UCEC 50436119 + 50436099 50436139 41 ACCCACATCCTGCCACCACCCGAGGGGACCGCAAGCAAAAG ACCCACATCCTGCCACCACCCGATGGGACCGCAAGCAAAAG < 41bp 0.831656570232441 0.468457659406876 0.9136332 0.25293937 prediction 0.663313140464881 Functional Loss - ATF5 ENSG00000169136 CDS Human protein_coding chr19:50436119 chr19:50436122 nonsynonymous SNV 0.978 4 24 hm5C_associated_SNPs_51035 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921093 0.8272664 0 hm5C_site_46387 DeepMRMD:0.8272664;iRNA_m5C:0 46388 chr3 35770879 35770879 1 + G T BLCA 35770876 + 35770856 35770896 41 CCAGAGCACACCCCTAGTCTCAGGTGTGGCAGCTGGCTCTC CCAGAGCACACCCCTAGTCTCAGTTGTGGCAGCTGGCTCTC < 41bp 0.844773469818623 0.513135270123136 0.95233583 0.39598948 prediction 0.663276399390975 Functional Loss - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35770876 chr3:35770879 nonsynonymous SNV 0.011 1 24 hm5C_associated_SNPs_51036 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921091 0.90467166 3.77475828372553e-15 hm5C_site_46388 DeepMRMD:0.90467166;iRNA_m5C:3.77475828372553e-15 46389 chr6 3154124 3154124 1 + C A COAD 3154127 - 3154107 3154147 41 GCCGACGAACAAGGGGAGTTCGAGGAGGAGGAGGGCGAGGA GCCGACGAACAAGGGGAGTTCGATGAGGAGGAGGGCGAGGA < 41bp 0.831626245122476 0.477360017034285 0.9149684 0.89574337 prediction 0.663252490244953 Functional Loss - TUBB2A ENSG00000137267 CDS Human protein_coding chr6:3154127 chr6:3154124 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_51037 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.03845006 0 hm5C_site_46389 DeepMRMD:0.03845006;iRNA_m5C:0 46390 chr11 63668456 63668456 1 + G T THCA 63668453 + 63668433 63668473 41 GATGGTGTCCATGGGTTATACACGGGAAGAGATCCAGGACT GATGGTGTCCATGGGTTATACACTGGAAGAGATCCAGGACT < 41bp 0.831616924643418 0.464300110454895 0.19076923 0.032435864 prediction 0.663233849286837 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63668453 chr11:63668456 nonsynonymous SNV 0.675 0 24 hm5C_associated_SNPs_51038 0 0 1 0 2 Nucleus 0.500231643925972 0.500231643921092 0 9.75886038645513e-12 hm5C_site_46390 DeepMRMD:0;iRNA_m5C:9.75886038645513e-12 46391 chr1 221055673 221055673 1 + G T LUAD 221055670 + 221055650 221055690 41 GAAAGCAGCTGGCGGCGATGCTGGGCCTCACGGACGCACAG GAAAGCAGCTGGCGGCGATGCTGTGCCTCACGGACGCACAG < 41bp 0.831603698535596 0.469646670668543 0.8861573 0.2548648 prediction 0.663207397071192 Functional Loss - HLX ENSG00000136630 CDS Human protein_coding chr1:221055670 chr1:221055673 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_51039 0 0 1 0 1 exosome 0.500231638425555 0.500231645458066 0.7723146 0 hm5C_site_46391 DeepMRMD:0.7723146;iRNA_m5C:0 46392 chr9 131671515 131671515 1 + A C BRCA 131671511 + 131671491 131671531 41 ACTGCCGCAAGCTGCGCTACCTGGACCTCAGCCACAACAAC ACTGCCGCAAGCTGCGCTACCTGGCCCTCAGCCACAACAAC < 41bp 0.831588634901744 0.457900213549746 0.1839731 0.14520097 prediction 0.663177269803489 Functional Loss - LRRC8A ENSG00000136802 CDS Human protein_coding chr9:131671511 chr9:131671515 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_51040 0 0 1 0 1 Endoplasmic reticulum 0.500231644151411 0.500231643496502 0 1.30981825385845e-09 hm5C_site_46392 DeepMRMD:0;iRNA_m5C:1.30981825385845e-09 46393 chr8 124810341 124810341 1 + G T LUAD 124810338 + 124810318 124810358 41 ATCATAACTCAGGTTTTCCTCTGGATCTCTTACGCTGTGAA ATCATAACTCAGGTTTTCCTCTGTATCTCTTACGCTGTGAA < 41bp 0.842642807408552 0.511074425613643 0.8376013 0.34673452 prediction 0.663136763589818 Functional Loss - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124810338 chr8:124810341 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51041 0 0 0 0 1 Ribosome 0.500232249589231 0.500049875046978 0.6752026 0.000364749084506233 hm5C_site_46393 DeepMRMD:0.6752026;iRNA_m5C:0.000364749084506233 46394 chr12 56626611 56626611 1 + G T SARC 56626608 + 56626588 56626628 41 TCGGGCCTGGACCTCCTTCACAGGCTTCTGTTGCTGGACCA TCGGGCCTGGACCTCCTTCACAGTCTTCTGTTGCTGGACCA < 41bp 0.873343057487188 0.54178631667009 0.86703837 0.37740618 prediction 0.663113481634197 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56626608 chr12:56626611 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51042 0 0 0 0 1 cytosol 0.500231643918147 0.500231643921092 0.73407674 0 hm5C_site_46394 DeepMRMD:0.73407674;iRNA_m5C:0 46395 chr16 1748864 1748864 1 + A C UCEC 1748860 + 1748840 1748880 41 GCCAGGTGAGAAAGGCAGCGCCAGAAAAGCAGGCCCCGCCA GCCAGGTGAGAAAGGCAGCGCCAGCAAAGCAGGCCCCGCCA < 41bp 0.85383878983272 0.522306228934576 0.86306727 0.42038777 prediction 0.66306512179629 Functional Loss - JPT2 ENSG00000206053 CDS Human protein_coding chr16:1748860 chr16:1748864 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_51043 0 0 1 0 1 unknown 0.500231643921008 0.500231643921097 0.72613454 0 hm5C_site_46395 DeepMRMD:0.72613454;iRNA_m5C:0 46396 chr12 27623608 27623608 1 + A C rs555243671 27623604 + 27623584 27623624 41 ACCTAAATAACAAAATGTCTCTGCAGATGAAGATGGACTGC ACCTAAATAACAAAATGTCTCTGCCGATGAAGATGGACTGC < 41bp 0.83151591825333 0.454828426382129 0.20268789 0.21183452 prediction 0.663031836506661 Functional Loss - SMCO2 ENSG00000165935 CDS Human protein_coding chr12:27623604 chr12:27623608 nonsynonymous SNV 0.085 0 25 hm5C_associated_SNPs_51044 0 0 0 0 2 exosome 0.500231643631317 0.500231644186332 0 0 hm5C_site_46396 DeepMRMD:0;iRNA_m5C:0 46397 chr19 6928286 6928286 1 + G T UCEC 6928283 + 6928263 6928303 41 AGGAGGAGCAAGGAGACCTGCGAGATCTGGAATTTCCAGGG AGGAGGAGCAAGGAGACCTGCGATATCTGGAATTTCCAGGG < 41bp 0.845315239757399 0.513804503870557 0.7002562 0.24190035 prediction 0.663021471773683 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6928283 chr19:6928286 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_51045 0 0 0 0 0 exosome 0.500231571630715 0.500231643921022 0.4005124 0 hm5C_site_46397 DeepMRMD:0.4005124;iRNA_m5C:0 46398 chr11 124564247 124564247 1 + A C SKCM 124564243 + 124564223 124564263 41 AAAGAAGAGGTTGCTGCTGTCAAAATCCAAGCTGCCTTCCG AAAGAAGAGGTTGCTGCTGTCAAACTCCAAGCTGCCTTCCG < 41bp 0.831506790738452 0.477765731833779 0.37986672 0.13449034 prediction 0.663013581476904 Functional Loss - SPA17 ENSG00000064199 CDS Human protein_coding chr11:124564243 chr11:124564247 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_51046 0 0 0 0 1 Ribosome 0.50024020436265 0.500232352089435 0 1.57045464306282e-05 hm5C_site_46398 DeepMRMD:0;iRNA_m5C:1.57045464306282e-05 46399 chr4 9784542 9784542 1 + A C THCA 9784538 + 9784518 9784558 41 AAGAAGGAGACCAAGGTTCTCAAGACCCTGTCGGTGATCAT AAGAAGGAGACCAAGGTTCTCAAGCCCCTGTCGGTGATCAT < 41bp 0.83147213753178 0.474722766116232 0.3158783 0.27622336 prediction 0.662944275063559 Functional Loss - DRD5 ENSG00000169676 CDS Human protein_coding chr4:9784538 chr4:9784542 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_51047 0 0 0 0 0 unknown 0.50023164001168 0.500231641196469 0 0 hm5C_site_46399 DeepMRMD:0;iRNA_m5C:0 46400 chr1 114440545 114440545 1 + C A UCEC 114440548 - 114440528 114440568 41 TAGTGGTGGTGCAGACTTTCCGAGACCTGGTTTGGTTGTGT TAGTGGTGGTGCAGACTTTCCGATACCTGGTTTGGTTGTGT < 41bp 0.855502613762629 0.524045243745337 0.866278 0.26933885 prediction 0.662914740034584 Functional Loss - AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114440548 chr1:114440545 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51048 0 0 0 0 2 chromatin 0.500231643610837 0.500231643775891 0.732556 0 hm5C_site_46400 DeepMRMD:0.732556;iRNA_m5C:0 46401 chr16 67919930 67919930 1 + A C rs73593844 67919926 + 67919906 67919946 41 CTCAGGTCCTGTCAGGCTGTCCGGAGGAGGCAGCTGCAGTG CTCAGGTCCTGTCAGGCTGTCCGGCGGAGGCAGCTGCAGTG < 41bp 0.861180067445106 0.529727943786547 0.8550463 0.7486088 prediction 0.662904247317117 Functional Loss - NRN1L ENSG00000188038 CDS Human protein_coding chr16:67919926 chr16:67919930 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_51049 0 0 0 0 1 exosome 0.500231643921102 0.500231643921093 0.212875 1.79856129989275e-14 hm5C_site_46401 DeepMRMD:0.212875;iRNA_m5C:1.79856129989275e-14 46402 chr9 131479176 131479176 1 + G T UCEC 131479173 + 131479153 131479193 41 GACCTCATGATGCAGATCCACGAGGATGTCTTCCCCGAGCC GACCTCATGATGCAGATCCACGATGATGTCTTCCCCGAGCC < 41bp 0.831417559382358 0.46259474556763 0.87973773 0.2642972 prediction 0.662835118764716 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131479173 chr9:131479176 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_51050 0 0 1 0 1 chromatin 0.500235058843312 0.500231642026577 0.75947546 6.8336334682062e-06 hm5C_site_46402 DeepMRMD:0.75947546;iRNA_m5C:6.8336334682062e-06 46403 chr11 111959653 111959653 1 + G T ESCA 111959650 + 111959630 111959670 41 GGGTTGTCAGTGTTTTGCTCCTGGGTCTGCTTCCGGCTGCT GGGTTGTCAGTGTTTTGCTCCTGTGTCTGCTTCCGGCTGCT < 41bp 0.831417088259112 0.476727313555084 0.850646 0.18500644 prediction 0.662834176518224 Functional Loss - SDHD ENSG00000204370;ENSG00000255292 CDS Human other chr11:111959650 chr11:111959653 nonsynonymous SNV 0.953 5 24 hm5C_associated_SNPs_51051 0 0 0 0 1 Ribosome 0.500231635790933 0.500231289923567 0.701292 6.91734732605198e-07 hm5C_site_46403 DeepMRMD:0.701292;iRNA_m5C:6.91734732605198e-07 46404 chr15 90167880 90167880 1 + A C LUSC 90167876 + 90167856 90167896 41 GGCTACCCAGGCCCTGGTCTCAGGAGTGATTGGCATGCATC GGCTACCCAGGCCCTGGTCTCAGGCGTGATTGGCATGCATC < 41bp 0.831403772174501 0.48264597139242 0.9556409 0.94372714 prediction 0.662807544349001 Functional Loss - TICRR ENSG00000140534 CDS Human protein_coding chr15:90167876 chr15:90167880 nonsynonymous SNV 0.031 1 25 hm5C_associated_SNPs_51052 0 0 1 0 0 chromatin 0.500231640753682 0.500231643583175 0.02382752 0 hm5C_site_46404 DeepMRMD:0.02382752;iRNA_m5C:0 46405 chr9 101594148 101594148 1 + A C LUAD 101594144 + 101594124 101594164 41 CTGGGGAACTCCGGGGAGCCCCAGATCGGCGGTTTCGACTG CTGGGGAACTCCGGGGAGCCCCAGCTCGGCGGTTTCGACTG < 41bp 0.878800157032544 0.547407801565006 0.36893928 0.14517954 prediction 0.662784710935076 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101594144 chr9:101594148 nonsynonymous SNV 0.972 1 25 hm5C_associated_SNPs_51053 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46405 DeepMRMD:0;iRNA_m5C:0 46406 chr5 110428032 110428032 1 + G T LUAD 110428029 + 110428009 110428049 41 TCCGGAAACGCGATTCGCAGCGGGCGCCGGAAGCGGTGTTG TCCGGAAACGCGATTCGCAGCGGTCGCCGGAAGCGGTGTTG < 41bp 0.831385127381487 0.486192343760855 0.5960682 0.3595255 prediction 0.662770254762974 Functional Loss - WDR36 ENSG00000134987 CDS Human protein_coding chr5:110428029 chr5:110428032 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_51054 0 0 0 0 0 Nucleus 0.500231642372208 0.500231784470923 0.1921364 0 hm5C_site_46406 DeepMRMD:0.1921364;iRNA_m5C:0 46407 chr20 60868968 60868968 1 + G T UCEC 60868965 + 60868945 60868985 41 GGCCTGGAGGGGCCTGGGGCCCGGGACCGGAGGCTGACGAG GGCCTGGAGGGGCCTGGGGCCCGTGACCGGAGGCTGACGAG < 41bp 0.859188090448513 0.527816823881064 0.84614384 0.46292165 prediction 0.662742533134899 Functional Loss - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60868965 chr20:60868968 synonymous SNV . 0 24 hm5C_associated_SNPs_51055 0 0 1 0 0 Ribosome 0.500231641646156 0.50023165027728 0.69228768 0 hm5C_site_46407 DeepMRMD:0.69228768;iRNA_m5C:0 46408 chr17 61895405 61895405 1 + G T GBM 61895402 + 61895382 61895422 41 GGGGCAGCAGCCGTCACAGTCACGGAGAGACTGGCAATCGG GGGGCAGCAGCCGTCACAGTCACTGAGAGACTGGCAATCGG < 41bp 0.86244295230764 0.53109469948454 0.4983183 0.22687355 prediction 0.6626965056462 Functional Loss - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61895402 chr17:61895405 stopgain 0.986 0 24 hm5C_associated_SNPs_51056 0 0 1 0 0 chromatin 0.500231642219033 0.500231643910493 0 0 hm5C_site_46408 DeepMRMD:0;iRNA_m5C:0 46409 chr19 17598009 17598009 1 + G T BLCA 17598006 + 17597986 17598026 41 TGGCCGAAGTGAGCGGGCATCTGGGGAAAAGTTTGATCAAG TGGCCGAAGTGAGCGGGCATCTGTGGAAAAGTTTGATCAAG < 41bp 0.831343100368999 0.482714034218202 0.86962384 0.35000563 prediction 0.662686200737997 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17598006 chr19:17598009 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_51057 0 0 0 0 1 Endoplasmic reticulum 0.500231657812046 0.500231644077594 0.73924768 2.74689035961728e-08 hm5C_site_46409 DeepMRMD:0.73924768;iRNA_m5C:2.74689035961728e-08 46410 chr14 20216138 20216138 1 + A C rs147266941 20216134 + 20216114 20216154 41 CAACTTCTACTGTGATGTCCCACAAGTCATCAAGCTGGCCT CAACTTCTACTGTGATGTCCCACACGTCATCAAGCTGGCCT < 41bp 0.831340822494652 0.477204280560185 0.011126488 0.0043071806 prediction 0.662681644989304 Functional Loss - OR4Q3 ENSG00000182652 CDS Human protein_coding chr14:20216134 chr14:20216138 nonsynonymous SNV 0.904 2 25 hm5C_associated_SNPs_51058 0 0 0 0 0 unknown 0.50024179091253 0.500231585912545 0 2.04099999707719e-05 hm5C_site_46410 DeepMRMD:0;iRNA_m5C:2.04099999707719e-05 46411 chr3 49750049 49750049 1 + G T COAD 49750046 + 49750026 49750066 41 ATCAACAGCTACAGTGCTCTCAAGAATTACTTTGGTCCCGT ATCAACAGCTACAGTGCTCTCAATAATTACTTTGGTCCCGT < 41bp 0.831330275037446 0.481984418462888 0.85605454 0.251476 prediction 0.662660550074893 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49750046 chr3:49750049 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51059 0 0 1 0 1 Nucleus 0.500231643920655 0.500232427844979 0.71210908 0 hm5C_site_46411 DeepMRMD:0.71210908;iRNA_m5C:0 46412 chr16 614287 614287 1 + G T UCEC 614284 + 614264 614304 41 GGGGAGCTGGAGCGGGCAGCCCAGAGTGACCCCAGGAGGAG GGGGAGCTGGAGCGGGCAGCCCATAGTGACCCCAGGAGGAG < 41bp 0.847217529559336 0.515910240320189 0.33860707 0.31037748 prediction 0.662614578478294 Functional Loss - PRR35 ENSG00000161992 CDS Human protein_coding chr16:614284 chr16:614287 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_51060 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46412 DeepMRMD:0;iRNA_m5C:0 46413 chr10 101293077 101293077 1 + G T UCEC 101293074 + 101293054 101293094 41 TCTGACGGAGGGGAGGAGGACGAGGAAGACGAGGGCGAGAA TCTGACGGAGGGGAGGAGGACGATGAAGACGAGGGCGAGAA < 41bp 0.862586452605587 0.531284852535165 0.9079584 0.8144461 prediction 0.662603200140844 Functional Loss - NKX2-3 ENSG00000119919 CDS Human protein_coding chr10:101293074 chr10:101293077 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51061 0 0 0 0 0 exosome 0.500231599710625 0.500231643921092 0.1870246 0 hm5C_site_46413 DeepMRMD:0.1870246;iRNA_m5C:0 46414 chr10 118215325 118215325 1 + G T LUSC 118215322 + 118215302 118215342 41 GGAAGCTGGGTCAAGGATACCAGGCCTTGGAAGAATAACTG GGAAGCTGGGTCAAGGATACCAGTCCTTGGAAGAATAACTG < 41bp 0.831296812009855 0.478081075085708 0.28072703 0.13277096 prediction 0.66259362401971 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118215322 chr10:118215325 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_51062 0 0 0 0 2 exosome 0.500231643921089 0.500231643921092 0 0 hm5C_site_46414 DeepMRMD:0;iRNA_m5C:0 46415 chr22 44532347 44532347 1 + A C rs201831464 44532343 + 44532323 44532363 41 TATTTTGGGGTTTTCAGAAACGGGAAGGCCTGCTGCATTCC TATTTTGGGGTTTTCAGAAACGGGCAGGCCTGCTGCATTCC < 41bp 0.875239846216703 0.543948159758139 0.9410926 0.8587247 prediction 0.662583372917129 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44532343 chr22:44532347 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_51063 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.1647358 0 hm5C_site_46415 DeepMRMD:0.1647358;iRNA_m5C:0 46416 chr5 5242232 5242232 1 + A C UCEC 5242228 + 5242208 5242248 41 TCCATGCCTCGCTTGGGGACCGAGAAGCAGCCCCCTGCCCA TCCATGCCTCGCTTGGGGACCGAGCAGCAGCCCCCTGCCCA < 41bp 0.831289032114821 0.460713608744407 0.94105697 0.90688634 prediction 0.662578064229643 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5242228 chr5:5242232 nonsynonymous SNV 0.066 0 25 hm5C_associated_SNPs_51064 0 0 0 0 2 exosome 0.500231643921092 0.500231643912085 0.06834126 1.80149228867776e-11 hm5C_site_46416 DeepMRMD:0.06834126;iRNA_m5C:1.80149228867776e-11 46417 chr1 74905217 74905217 1 + G T PRAD 74905214 + 74905194 74905234 41 TGAGGTGTTCACGCAGTGCACTCGGTACACCATCAAAGCAG TGAGGTGTTCACGCAGTGCACTCTGTACACCATCAAAGCAG < 41bp 0.831284276219983 0.494880941889337 0.25992066 0.086990654 prediction 0.662568552439967 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74905214 chr1:74905217 nonsynonymous SNV 0.816 2 24 hm5C_associated_SNPs_51065 0 0 0 0 2 unknown 0.500231644500954 0.500231643910487 0 1.18093312906353e-09 hm5C_site_46417 DeepMRMD:0;iRNA_m5C:1.18093312906353e-09 46418 chr11 123893777 123893777 1 + G T LUAD 123893774 + 123893754 123893794 41 TCACGGGCCTTCCCCATGCCCCAGGGCTGGACGCCCCACTC TCACGGGCCTTCCCCATGCCCCATGGCTGGACGCCCCACTC < 41bp 0.862574324009568 0.531314426431265 0.30013245 0.044941247 prediction 0.662519795156604 Functional Loss - OR10G9 ENSG00000236981 CDS Human protein_coding chr11:123893774 chr11:123893777 nonsynonymous SNV 0.022 1 24 hm5C_associated_SNPs_51066 0 0 0 0 0 unknown 0.500231658659575 0.500231590020525 0 1.37278099998639e-07 hm5C_site_46418 DeepMRMD:0;iRNA_m5C:1.37278099998639e-07 46419 chr16 67915267 67915267 1 + G T STAD 67915264 + 67915244 67915284 41 CCTGCCAAGGACTGGAAGACCAAGGGATCCCCTCGAACCTC CCTGCCAAGGACTGGAAGACCAATGGATCCCCTCGAACCTC < 41bp 0.874402538062533 0.543175246814683 0.9375378 0.6708941 prediction 0.6624545824957 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915264 chr16:67915267 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51067 0 0 1 0 2 Cytosol 0.500231643888211 0.500231643921092 0.5332874 0 hm5C_site_46419 DeepMRMD:0.5332874;iRNA_m5C:0 46420 chr16 28912188 28912188 1 + A C UCEC 28912184 + 28912164 28912204 41 TCGCCCGTGTGGAGCCCTCGCACAAGTCCAAGATTGTGGAG TCGCCCGTGTGGAGCCCTCGCACACGTCCAAGATTGTGGAG < 41bp 0.831201080683539 0.440940293619592 0.09102476 0.08061582 prediction 0.662402161367079 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28912184 chr16:28912188 nonsynonymous SNV 0.985 5 25 hm5C_associated_SNPs_51068 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_46420 DeepMRMD:0;iRNA_m5C:0 46421 chr19 41089339 41089339 1 + G T HNSC 41089336 + 41089316 41089356 41 CAGCCCATCACCAGTTATGACGCGGCAGGCTCCTTCCTCCT CAGCCCATCACCAGTTATGACGCTGCAGGCTCCTTCCTCCT < 41bp 0.831192760151032 0.465831480574413 0.89480585 0.5407528 prediction 0.662385520302064 Functional Loss - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41089336 chr19:41089339 synonymous SNV . 0 24 hm5C_associated_SNPs_51069 0 0 1 0 2 Ribosome 0.500231643921109 0.500231643918454 0.7081061 5.31041877138705e-12 hm5C_site_46421 DeepMRMD:0.7081061;iRNA_m5C:5.31041877138705e-12 Multiple complex diseases 46422 chr3 156763332 156763332 1 + A C rs142759712 156763328 + 156763308 156763348 41 TCATGGAGAGAGAAGCCTTGCAAGACTGAACTCTGAAAAAG TCATGGAGAGAGAAGCCTTGCAAGCCTGAACTCTGAAAAAG < 41bp 0.831163736779629 0.484989993652192 0.41968527 0.23126906 prediction 0.662327473559258 Functional Loss - LEKR1 ENSG00000197980 CDS Human protein_coding chr3:156763328 chr3:156763332 nonsynonymous SNV 0.099 0 25 hm5C_associated_SNPs_51070 0 0 0 0 0 chromatin 0.500231642523408 0.500231643412028 0 0 hm5C_site_46422 DeepMRMD:0;iRNA_m5C:0 46423 chr5 141307750 141307750 1 + G T COAD 141307747 + 141307727 141307767 41 CGTGCTGGCCCTGCAGCTGGCAAGGCAGATCCACTTCCAGG CGTGCTGGCCCTGCAGCTGGCAATGCAGATCCACTTCCAGG < 41bp 0.831139860940376 0.457146450965386 0.7502653 0.19200546 prediction 0.662279721880752 Functional Loss - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141307747 chr5:141307750 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51071 0 0 1 0 1 Ribosome 0.500231643921078 0.500231643921092 0.5005306 0 hm5C_site_46423 DeepMRMD:0.5005306;iRNA_m5C:0 46424 chr1 104615794 104615794 1 + G T rs3811504 104615791 + 104615771 104615811 41 GGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGCCCTGGGA GGTCCTCCCTGAGGCGGGGGCCGTAGAGGACAGCCCTGGGA < 41bp 0.848633748420286 0.517494224275558 0.89623725 0.66972053 prediction 0.662279048289458 Functional Loss - LOC100129138 ENSG00000215869;ENSG00000243500 ncRNA_exonic Human other chr1:104615791 chr1:104615794 . . 0 24 hm5C_associated_SNPs_51072 0 0 0 0 0 unknown 0.500231643924621 0.5002316439606 0.45303344 0 hm5C_site_46424 DeepMRMD:0.45303344;iRNA_m5C:0 46425 chr18 48248343 48248343 1 + G T LUSC 48248340 + 48248320 48248360 41 TGGAGCAGATGCAACTCATCCTGGAGACCATCCCTGTAATC TGGAGCAGATGCAACTCATCCTGTAGACCATCCCTGTAATC < 41bp 0.854348587114322 0.523228826839824 0.14699519 0.030482858 prediction 0.662239520548995 Functional Loss - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48248340 chr18:48248343 stopgain 0.999 0 24 hm5C_associated_SNPs_51073 0 0 0 0 1 exosome 0.500297450559276 0.500231243589551 0 0.000132413939449627 hm5C_site_46425 DeepMRMD:0;iRNA_m5C:0.000132413939449627 46426 chr11 70049652 70049652 1 + G T SARC 70049649 + 70049629 70049669 41 GAGCTCAAGTTCCTATGCCTCGGGCGCGTGGGCAAGCGCAA GAGCTCAAGTTCCTATGCCTCGGTCGCGTGGGCAAGCGCAA < 41bp 0.857260533051696 0.52616576317976 0.8758465 0.111935765 prediction 0.662189539743871 Functional Loss - FADD ENSG00000168040 CDS Human protein_coding chr11:70049649 chr11:70049652 synonymous SNV . 0 24 hm5C_associated_SNPs_51074 0 0 1 0 0 Ribosome 0.500091816054866 0.500231641721045 0.751693 0 hm5C_site_46426 DeepMRMD:0.751693;iRNA_m5C:0 46427 chr10 45924191 45924191 1 + G T UCEC 45924188 + 45924168 45924208 41 CTGTATAAGAACCTGGCCAACAAGATTGTCCCCATTGCCAT CTGTATAAGAACCTGGCCAACAATATTGTCCCCATTGCCAT < 41bp 0.859771672446783 0.52870614982191 0.41427776 0.17720357 prediction 0.662131045249747 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45924188 chr10:45924191 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51075 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_46427 DeepMRMD:0;iRNA_m5C:0 46428 chr17 7214775 7214775 1 + A C STAD 7214771 + 7214751 7214791 41 ACCTTGGCAAGGAGATTGAGCAGAAGTACGACTGTGGAGAA ACCTTGGCAAGGAGATTGAGCAGACGTACGACTGTGGAGAA < 41bp 0.831062818862807 0.465724083909052 0.46998182 0.50453615 prediction 0.662125637725614 Functional Loss - EIF5A ENSG00000132507 CDS Human protein_coding chr17:7214771 chr17:7214775 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51076 0 0 1 0 1 Ribosome 0.500231647862722 0.500343488746883 0 0 hm5C_site_46428 DeepMRMD:0;iRNA_m5C:0 46429 chr6 26158661 26158661 1 + G T BLCA 26158658 + 26158638 26158678 41 CTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGGA CTGGCGCATTACAACAAGCGCTCTACCATCACCTCCAGGGA < 41bp 0.831044403609895 0.493631823712832 0.06507793 0.26077664 prediction 0.662088807219789 Functional Loss - HIST1H2BD ENSG00000158373 CDS Human protein_coding chr6:26158658 chr6:26158661 synonymous SNV . 0 24 hm5C_associated_SNPs_51077 0 0 1 0 0 Cytosol 0.500231639787675 0.500231643918616 0 0 hm5C_site_46429 DeepMRMD:0;iRNA_m5C:0 46430 chr5 153432616 153432616 1 + G T KIRC 153432613 + 153432593 153432633 41 ACCCTACGTGTTATCTTCACCTCGGGAGACATGAGTGTCTA ACCCTACGTGTTATCTTCACCTCTGGAGACATGAGTGTCTA < 41bp 0.831040700280437 0.499641740984542 0.06127113 0.21291727 prediction 0.662081400560874 Functional Loss - MFAP3 ENSG00000037749 CDS Human protein_coding chr5:153432613 chr5:153432616 synonymous SNV . 0 24 hm5C_associated_SNPs_51078 0 0 1 0 0 Endoplasmic reticulum 0.500231643921094 0.500231642375728 0 3.09073278081939e-09 hm5C_site_46430 DeepMRMD:0;iRNA_m5C:3.09073278081939e-09 46431 chr1 167666620 167666620 1 + G T GBM 167666617 + 167666597 167666637 41 ACAGAGAAGCAGGAGGAGGACAGGGCCACAGAGGAAGCCAA ACAGAGAAGCAGGAGGAGGACAGTGCCACAGAGGAAGCCAA < 41bp 0.873885663619847 0.542848600825151 0.8697636 0.25263643 prediction 0.662074125589392 Functional Loss - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167666617 chr1:167666620 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_51079 0 0 0 0 0 chromatin 0.500231643921092 0.500231643909528 0.7395272 2.31283880935962e-11 hm5C_site_46431 DeepMRMD:0.7395272;iRNA_m5C:2.31283880935962e-11 46432 chr2 43926894 43926894 1 + G T UCEC 43926891 + 43926871 43926911 41 CTCAGAACAGAATCGGAAAACAAGAACAAGCTTTGCCACAG CTCAGAACAGAATCGGAAAACAATAACAAGCTTTGCCACAG < 41bp 0.83215854375523 0.501123269442264 0.36214083 0.121389985 prediction 0.662070548625932 Functional Loss - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43926891 chr2:43926894 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_51080 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46432 DeepMRMD:0;iRNA_m5C:0 46433 chr10 112258042 112258042 1 + G T rs74386806 112258039 + 112258019 112258059 41 TCAACTCGGTGGTGCTGCGGCGGGCCCGGGGCGGCGCGGTG TCAACTCGGTGGTGCTGCGGCGGTCCCGGGGCGGCGCGGTG < 41bp 0.846507555735753 0.515479318622668 0.78015995 0.6270598 prediction 0.662056474226169 Functional Loss - DUSP5 ENSG00000138166 CDS Human protein_coding chr10:112258039 chr10:112258042 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_51081 0 0 0 0 0 Cytosol 0.500231643916488 0.500231643941078 0.3062003 0 hm5C_site_46433 DeepMRMD:0.3062003;iRNA_m5C:0 46434 chr12 125626690 125626690 1 + G T LUAD 125626687 + 125626667 125626707 41 TGCCGTCAAACAGATCATCGCTGGAAAAGCCGTGGAGCAAG TGCCGTCAAACAGATCATCGCTGTAAAAGCCGTGGAGCAAG < 41bp 0.849148725867847 0.51812357666396 0.3427869 0.12765789 prediction 0.662050298407775 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125626687 chr12:125626690 nonsynonymous SNV 0.015 4 24 hm5C_associated_SNPs_51082 0 0 1 0 1 Ribosome 0.500231643921105 0.500231643921076 0 5.83977310952832e-14 hm5C_site_46434 DeepMRMD:0;iRNA_m5C:5.83977310952832e-14 46435 chr17 4856127 4856127 1 + G T LUAD 4856124 + 4856104 4856144 41 GCTGTGCCCAGTGGGGCTTCCACGGGTATCTATGAGGCTCT GCTGTGCCCAGTGGGGCTTCCACTGGTATCTATGAGGCTCT < 41bp 0.867861622809918 0.536841884114873 0.8756115 0.27951762 prediction 0.662039477390091 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4856124 chr17:4856127 synonymous SNV . 0 24 hm5C_associated_SNPs_51083 0 0 0 0 2 nucleus 0.500231643921787 0.500231643941202 0.751223 0 hm5C_site_46435 DeepMRMD:0.751223;iRNA_m5C:0 46436 chrX 105153108 105153108 1 + A C LUSC 105153104 + 105153084 105153124 41 AGGTTAGGGCACCTAGGCTTCTGCAGGTACAGTCCCAGGTA AGGTTAGGGCACCTAGGCTTCTGCCGGTACAGTCCCAGGTA < 41bp 0.880915826396022 0.549908621857148 0.31168 0.26248634 prediction 0.662014409077748 Functional Loss - NRK ENSG00000123572 CDS Human protein_coding chrX:105153104 chrX:105153108 nonsynonymous SNV 0.041 1 25 hm5C_associated_SNPs_51084 0 0 0 0 0 exosome 0.500231643925195 0.500231641146414 0 5.55756085596215e-09 hm5C_site_46436 DeepMRMD:0;iRNA_m5C:5.55756085596215e-09 46437 chr20 11899149 11899149 1 + A C LUAD 11899145 + 11899125 11899165 41 CCCCGTAAAAAGCCAGCCAACTCCAGCAGCACCAGCGTCCA CCCCGTAAAAAGCCAGCCAACTCCCGCAGCACCAGCGTCCA < 41bp 0.83099782442233 0.433869894308854 0.90410143 0.02562511 prediction 0.66199564884466 Functional Loss - BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11899145 chr20:11899149 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51085 0 0 1 0 0 Cytosol 0.500231643919613 0.500231643921092 0.80820286 0 hm5C_site_46437 DeepMRMD:0.80820286;iRNA_m5C:0 46438 chr4 187195356 187195356 1 + G T UCEC 187195353 + 187195333 187195373 41 CCAAGAGTGCTCAAGAATGCCAAGAAAGATGCACGGATGAC CCAAGAGTGCTCAAGAATGCCAATAAAGATGCACGGATGAC < 41bp 0.830995367958542 0.482646184303692 0.442542 0.24857417 prediction 0.661990735917083 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187195353 chr4:187195356 stopgain 0.907 0 24 hm5C_associated_SNPs_51086 0 0 0 0 2 cytosol 0.500231643922173 0.500235054022131 0 0 hm5C_site_46438 DeepMRMD:0;iRNA_m5C:0 46439 chr1 905684 905684 1 + G T UCEC 905681 + 905661 905701 41 TCCTGGACCTGGAGAACCAGCGAGAAAACCTGGAGCAGCCA TCCTGGACCTGGAGAACCAGCGATAAAACCTGGAGCAGCCA < 41bp 0.83098559139872 0.475752028361502 0.9194356 0.9101613 prediction 0.66197118279744 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:905681 chr1:905684 stopgain 0.007 0 24 hm5C_associated_SNPs_51087 0 0 1 0 1 chromatin 0.500231643921079 0.500231643921121 0.0185486000000001 0 hm5C_site_46439 DeepMRMD:0.0185486000000001;iRNA_m5C:0 46440 chr7 101201047 101201047 1 + A C rs11762601 101201043 + 101201023 101201063 41 TCCCCTACCCCCACTCCCGGCTGGAGACGGGGTCTGGGTGG TCCCCTACCCCCACTCCCGGCTGGCGACGGGGTCTGGGTGG < 41bp 0.830976575495605 0.489630384096961 0.84583217 0.7053481 prediction 0.66195315099121 Functional Loss - COL26A1 ENSG00000160963 UTR3 Human protein_coding chr7:101201043 chr7:101201047 . . 0 25 hm5C_associated_SNPs_51088 0 0 0 0 0 exosome 0.500226588208375 0.500270062808001 0.28096814 0 hm5C_site_46440 DeepMRMD:0.28096814;iRNA_m5C:0 46441 chr8 101252666 101252666 1 + A C STAD 101252662 + 101252642 101252682 41 CAAGGAGGAGCCTGGAAGACCTGCAGGGGAGGTCTCCATGG CAAGGAGGAGCCTGGAAGACCTGCCGGGGAGGTCTCCATGG < 41bp 0.881479703311355 0.550538763342601 0.61105156 0.2214694 prediction 0.661881879937508 Functional Loss - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101252662 chr8:101252666 synonymous SNV . 0 25 hm5C_associated_SNPs_51089 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0.22210312 0 hm5C_site_46441 DeepMRMD:0.22210312;iRNA_m5C:0 46442 chr5 3599858 3599858 1 + G T UCEC 3599855 + 3599835 3599875 41 CTTCTGCTCTTGCCCGGGACCAAGGCTCGCCGCTGGCAGCA CTTCTGCTCTTGCCCGGGACCAATGCTCGCCGCTGGCAGCA < 41bp 0.865678354113138 0.534794795968869 0.7286197 0.08718374 prediction 0.661767116288537 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3599855 chr5:3599858 nonsynonymous SNV 0.042 1 24 hm5C_associated_SNPs_51090 0 0 0 0 0 exosome 0.500231643996026 0.500231643921093 0.4572394 1.4986722973731e-10 hm5C_site_46442 DeepMRMD:0.4572394;iRNA_m5C:1.4986722973731e-10 46443 chr16 46943636 46943636 1 + G T LUSC 46943633 + 46943613 46943653 41 CGTCTCCGGGGGCGGCAAGTCACGGACAGGTGTGATGATCC CGTCTCCGGGGGCGGCAAGTCACTGACAGGTGTGATGATCC < 41bp 0.830867873240864 0.459533121832054 0.2351538 0.030484289 prediction 0.661735746481727 Functional Loss - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46943633 chr16:46943636 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_51091 0 0 1 0 1 Ribosome 0.500231628620278 0.500231658463066 0 0 hm5C_site_46443 DeepMRMD:0;iRNA_m5C:0 46444 chr3 46449733 46449733 1 + G T COAD 46449730 + 46449710 46449750 41 CTGTGTTTGTGATCGGTGTCCTGGACAATCTCCTGGTTGTG CTGTGTTTGTGATCGGTGTCCTGTACAATCTCCTGGTTGTG < 41bp 0.830852732282624 0.471706570834338 0.5494256 0.38961446 prediction 0.661705464565247 Functional Loss - CCRL2 ENSG00000121797 CDS Human protein_coding chr3:46449730 chr3:46449733 nonsynonymous SNV 0.043 2 24 hm5C_associated_SNPs_51092 0 0 0 0 0 exosome 0.5002316439291 0.500234046182301 0.0988511999999999 0 hm5C_site_46444 DeepMRMD:0.0988511999999999;iRNA_m5C:0 46445 chr3 160395581 160395581 1 + G T BLCA 160395578 + 160395558 160395598 41 GTGAAGAAGCTTTGCAGTGACCGGAACTGGTATGTGCAACC GTGAAGAAGCTTTGCAGTGACCGTAACTGGTATGTGCAACC < 41bp 0.831641157860421 0.500798955279851 0.84309936 0.2080046 prediction 0.661684405161139 Functional Loss - ARL14 ENSG00000179674 CDS Human protein_coding chr3:160395578 chr3:160395581 synonymous SNV . 0 24 hm5C_associated_SNPs_51093 0 0 1 0 0 exosome 0.500291177605355 0.500137875832819 0.68619872 0.000306603545072504 hm5C_site_46445 DeepMRMD:0.68619872;iRNA_m5C:0.000306603545072504 46446 chr2 133175440 133175440 1 + G T LUSC 133175437 + 133175417 133175457 41 AAGTCCGAGAGCGAAGAGAGCAGGACCGCCAGGAGGCAGAC AAGTCCGAGAGCGAAGAGAGCAGTACCGCCAGGAGGCAGAC < 41bp 0.853058827691582 0.522250474948478 0.38631332 0.25367635 prediction 0.661616705486209 Functional Loss - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133175437 chr2:133175440 nonsynonymous SNV 0.986 1 24 hm5C_associated_SNPs_51094 0 0 0 0 1 nucleus 0.500231668304747 0.500231643915006 0 4.87794813430753e-08 hm5C_site_46446 DeepMRMD:0;iRNA_m5C:4.87794813430753e-08 46447 chr8 125072483 125072483 1 + C A LUSC 125072486 - 125072466 125072506 41 GGCCGAATGTTGGCAGGAACCGGGTAGATCTGGGTGATGTC GGCCGAATGTTGGCAGGAACCGGTTAGATCTGGGTGATGTC < 41bp 0.830794127593074 0.483763222053193 0.90798223 0.23625174 prediction 0.661588255186148 Functional Loss - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125072486 chr8:125072483 stopgain 0.801 0 24 hm5C_associated_SNPs_51095 0 0 0 0 0 exosome 0.50023167573775 0.50023164360038 0.81596446 6.42747404189237e-08 hm5C_site_46447 DeepMRMD:0.81596446;iRNA_m5C:6.42747404189237e-08 46448 chr2 3727464 3727464 1 + G T LUSC 3727461 + 3727441 3727481 41 GTCCTCTGTGTTGCGCAGGTCACGACTGGTGTGTCCTCAGG GTCCTCTGTGTTGCGCAGGTCACTACTGGTGTGTCCTCAGG < 41bp 0.830714527341705 0.491459737882681 0.14472574 0.11265057 prediction 0.66142905468341 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3727461 chr2:3727464 nonsynonymous SNV 0.012 4 24 hm5C_associated_SNPs_51096 0 0 0 0 1 unknown 0.500231673491217 0.500231643268989 0 6.04444565510676e-08 hm5C_site_46448 DeepMRMD:0;iRNA_m5C:6.04444565510676e-08 46449 chr9 123931934 123931934 1 + G T DLBC 123931931 + 123931911 123931951 41 GCAGCAATTGGTGGAGAAATCAGGTGAGCTGTTGGCCCTCC GCAGCAATTGGTGGAGAAATCAGTTGAGCTGTTGGCCCTCC < 41bp 0.844076366767261 0.513404878046717 0.9081397 0.6915842 prediction 0.661342977441088 Functional Loss - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123931931 chr9:123931934 nonsynonymous SNV 0.069 0 24 hm5C_associated_SNPs_51097 0 0 1 0 1 chromatin 0.500231643918989 0.50023164392109 0.433111 0 hm5C_site_46449 DeepMRMD:0.433111;iRNA_m5C:0 46450 chr2 46808686 46808686 1 + C A COAD 46808689 - 46808669 46808709 41 CTTGGAGCGACCTTTGGCTACGTGGCTGGCCTTGTTATTTC CTTGGAGCGACCTTTGGCTACGTTGCTGGCCTTGTTATTTC < 41bp 0.843311229619207 0.512662360849134 0.108520985 0.036361575 prediction 0.661297737540146 Functional Loss - PIGF ENSG00000151665 CDS Human protein_coding chr2:46808689 chr2:46808686 synonymous SNV . 0 24 hm5C_associated_SNPs_51098 0 0 1 1 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46450 DeepMRMD:0;iRNA_m5C:0 46451 chr6 43251186 43251186 1 + G T OV 43251183 + 43251163 43251203 41 CAAGCCCCCGGGGCCTGGGGCAGGGCTGGGGGCCGGGACAG CAAGCCCCCGGGGCCTGGGGCAGTGCTGGGGGCCGGGACAG < 41bp 0.882543987935063 0.551895524469919 0.89444304 0.7681752 prediction 0.66129692693029 Functional Loss - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43251183 chr6:43251186 nonsynonymous SNV 0.135 1 24 hm5C_associated_SNPs_51099 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.25253568 0 hm5C_site_46451 DeepMRMD:0.25253568;iRNA_m5C:0 46452 chr1 203472100 203472100 1 + G T LIHC 203472097 + 203472077 203472117 41 CAACCTGCTGGATTCTATCCCGGGGCCTTTGCCCCTGAGCC CAACCTGCTGGATTCTATCCCGGTGCCTTTGCCCCTGAGCC < 41bp 0.830646840861068 0.449567225282246 0.9482504 0.8891574 prediction 0.661293681722136 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472097 chr1:203472100 nonsynonymous SNV 0.527 0 24 hm5C_associated_SNPs_51100 0 0 0 0 2 unknown 0.500231643921092 0.50023164450027 0.118186 0 hm5C_site_46452 DeepMRMD:0.118186;iRNA_m5C:0 46453 chr6 43033394 43033394 1 + G T COAD 43033391 + 43033371 43033411 41 GCGATGCCACCAAGGATTCCCTGGATGACCTCTTTCCTAAT GCGATGCCACCAAGGATTCCCTGTATGACCTCTTTCCTAAT < 41bp 0.853123935245419 0.522489636407652 0.8463761 0.34402496 prediction 0.661268597675533 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43033391 chr6:43033394 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51101 0 0 1 0 2 Cytosol 0.500231643921094 0.500231643921436 0.6927522 0 hm5C_site_46453 DeepMRMD:0.6927522;iRNA_m5C:0 46454 chr22 18894238 18894238 1 + G T STAD 18894235 + 18894215 18894255 41 TGCGCCTACAGAACGAGCATCGAGGTGCGCGGGGGCAGCGG TGCGCCTACAGAACGAGCATCGATGTGCGCGGGGGCAGCGG < 41bp 0.830618872509882 0.467390199647682 0.9034323 0.38782626 prediction 0.661237745019764 Functional Loss - DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18894235 chr22:18894238 nonsynonymous SNV 0.979 0 24 hm5C_associated_SNPs_51102 0 0 0 0 1 Ribosome 0.500231659373634 0.500231642286945 0.8068646 3.41733776831887e-08 hm5C_site_46454 DeepMRMD:0.8068646;iRNA_m5C:3.41733776831887e-08 46455 chr6 33365901 33365901 1 + G T SARC 33365898 + 33365878 33365918 41 CCTCTCTCAGGAAGCAGACTCAAGAGGAGGCCTGACCAGAT CCTCTCTCAGGAAGCAGACTCAATAGGAGGCCTGACCAGAT < 41bp 0.860346488522134 0.529746489368771 0.8265374 0.1748004 prediction 0.661199998306726 Functional Loss - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33365898 chr6:33365901 nonsynonymous SNV 0.901 2 24 hm5C_associated_SNPs_51103 0 0 1 0 2 Cytosol 0.500231643921093 0.500231643921092 0.6530748 1.33226762955019e-15 hm5C_site_46455 DeepMRMD:0.6530748;iRNA_m5C:1.33226762955019e-15 46456 chrX 155239747 155239747 1 + G T UCEC 155239744 + 155239724 155239764 41 GCCTATCTGCCACAGGAGGACTGGGCCCCCACGTCCCTGAC GCCTATCTGCCACAGGAGGACTGTGCCCCCACGTCCCTGAC < 41bp 0.863136206443446 0.53255109321425 0.38978153 0.14921755 prediction 0.661170226458391 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155239744 chrX:155239747 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_51104 0 0 0 0 0 exosome 0.500231643921092 0.500231612661807 0 6.25185712088694e-08 hm5C_site_46456 DeepMRMD:0;iRNA_m5C:6.25185712088694e-08 46457 chr8 27361273 27361273 1 + G T BLCA 27361270 + 27361250 27361290 41 CTCCAGGCAGCTCTCATGCTCAGGAAGAAAGGTAAGGATCT CTCCAGGCAGCTCTCATGCTCAGTAAGAAAGGTAAGGATCT < 41bp 0.83057261441281 0.46964456544576 0.88242954 0.19797063 prediction 0.66114522882562 Functional Loss - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27361270 chr8:27361273 nonsynonymous SNV 0.322 3 24 hm5C_associated_SNPs_51105 0 0 1 0 1 Cytosol 0.500231643971162 0.500232431069258 0.76485908 0 hm5C_site_46457 DeepMRMD:0.76485908;iRNA_m5C:0 46458 chr16 30387978 30387978 1 + G T UCEC 30387975 + 30387955 30387995 41 GATGTGATCACCGGAGCCTTCAAGGTCTTGGACCCTGAGGG GATGTGATCACCGGAGCCTTCAATGTCTTGGACCCTGAGGG < 41bp 0.830566583643605 0.4596180408603 0.8508338 0.20454448 prediction 0.661133167287211 Functional Loss - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387975 chr16:30387978 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51106 0 0 0 0 2 exosome 0.500231643921092 0.500231643921109 0.7016676 0 hm5C_site_46458 DeepMRMD:0.7016676;iRNA_m5C:0 46459 chr16 74425669 74425669 1 + G T UCEC 74425666 + 74425646 74425686 41 CCCTCAGTGGATGATAATCTCAAGACTCCTCCCTTAGCTAC CCCTCAGTGGATGATAATCTCAATACTCCTCCCTTAGCTAC < 41bp 0.830565444852475 0.487773375168807 0.9060786 0.3122257 prediction 0.661130889704951 Functional Loss - NPIPB15 ENSG00000196436 CDS Human protein_coding chr16:74425666 chr16:74425669 nonsynonymous SNV 0.055 1 24 hm5C_associated_SNPs_51107 0 0 0 0 0 Endoplasmic reticulum 0.500231643921288 0.500231643921092 0.8121572 3.90354415458205e-13 hm5C_site_46459 DeepMRMD:0.8121572;iRNA_m5C:3.90354415458205e-13 46460 chr2 207652825 207652825 1 + G T LUAD 207652822 + 207652802 207652842 41 CAGAGGTGCTGAGCAGCCTTCTGGGAGGTGAAGGACACTTC CAGAGGTGCTGAGCAGCCTTCTGTGAGGTGAAGGACACTTC < 41bp 0.830561169826194 0.486923958995842 0.8409128 0.34250677 prediction 0.661122339652388 Functional Loss - FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207652822 chr2:207652825 stopgain 0.173 0 24 hm5C_associated_SNPs_51108 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921103 0.6818256 0 hm5C_site_46460 DeepMRMD:0.6818256;iRNA_m5C:0 46461 chr4 20620619 20620619 1 + G T HNSC 20620616 + 20620596 20620636 41 AGTGGTGAAGTGCGGCTGTACGAGGTGTGTGTCCTAAACAC AGTGGTGAAGTGCGGCTGTACGATGTGTGTGTCCTAAACAC < 41bp 0.842296825291779 0.511751764680885 0.89647436 0.28123602 prediction 0.661090121221786 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20620616 chr4:20620619 nonsynonymous SNV 0.093 2 24 hm5C_associated_SNPs_51109 0 0 1 0 0 Ribosome 0.500231643918548 0.500250422878933 0.79294872 0 hm5C_site_46461 DeepMRMD:0.79294872;iRNA_m5C:0 46462 chr3 186394945 186394945 1 + G T UCEC 186394942 + 186394922 186394962 41 TCCATTCAAGCCCCATGGATCTAGAGATCATCATCATCCCC TCCATTCAAGCCCCATGGATCTATAGATCATCATCATCCCC < 41bp 0.83053989174747 0.480865365307711 0.25954562 0.10808158 prediction 0.66107978349494 Functional Loss - HRG ENSG00000113905 CDS Human protein_coding chr3:186394942 chr3:186394945 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_51110 0 0 0 0 0 exosome 0.500231643762897 0.500231643921092 0 0 hm5C_site_46462 DeepMRMD:0;iRNA_m5C:0 46463 chr22 30772571 30772571 1 + G T BLCA 30772568 + 30772548 30772588 41 GCAGCCCTGCACATCCCCATCTCGGCAGCCCTGCAGCCAGC GCAGCCCTGCACATCCCCATCTCTGCAGCCCTGCAGCCAGC < 41bp 0.830534560493498 0.471388959849702 0.5029371 0.29270622 prediction 0.661069120986995 Functional Loss - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30772568 chr22:30772571 nonsynonymous SNV 0.032 1 24 hm5C_associated_SNPs_51111 0 0 0 0 0 exosome 0.500231643921092 0.500231622894432 0.00587420000000005 4.20533206035856e-08 hm5C_site_46463 DeepMRMD:0.00587420000000005;iRNA_m5C:4.20533206035856e-08 46464 chr15 22848987 22848987 1 + G T UCEC 22848984 + 22848964 22849004 41 CAGTTCTGAGAGCATGCTGCCTGGAAGTGGGTCTGTTCCTA CAGTTCTGAGAGCATGCTGCCTGTAAGTGGGTCTGTTCCTA < 41bp 0.830527827390996 0.478847539764778 0.1674768 0.06875217 prediction 0.661055654781992 Functional Loss - TUBGCP5 ENSG00000153575 CDS Human other chr15:22848984 chr15:22848987 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_51112 0 0 1 0 0 chromatin 0.500231643743518 0.500231639093155 0 9.30072530103132e-09 hm5C_site_46464 DeepMRMD:0;iRNA_m5C:9.30072530103132e-09 46465 chr4 190878657 190878657 1 + G T UCEC 190878654 + 190878634 190878674 41 GCAGGAGAAGAAGAAATGATCAAGGTAATGATGACATTTTA GCAGGAGAAGAAGAAATGATCAATGTAATGATGACATTTTA < 41bp 0.83050264297276 0.488170279521044 0.9302496 0.9042028 prediction 0.661005285945521 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878654 chr4:190878657 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_51113 0 0 0 0 1 Cytosol 0.500231644922322 0.500231635165411 0.0520936000000001 1.95138225578262e-08 hm5C_site_46465 DeepMRMD:0.0520936000000001;iRNA_m5C:1.95138225578262e-08 46466 chr3 129185898 129185898 1 + G T LUAD 129185895 + 129185875 129185915 41 GAGGAAGAGGACGACAGTCCCAGGGACGACAACTTGTGAGT GAGGAAGAGGACGACAGTCCCAGTGACGACAACTTGTGAGT < 41bp 0.834254338139274 0.503784022509021 0.93415415 0.7916323 prediction 0.660940631260506 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129185895 chr3:129185898 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_51114 0 0 0 0 1 Nucleus 0.500231654071422 0.500231643239956 0.2850437 2.16629314486738e-08 hm5C_site_46466 DeepMRMD:0.2850437;iRNA_m5C:2.16629314486738e-08 46467 chr5 140605189 140605189 1 + G T LUAD 140605186 + 140605166 140605206 41 GTGTCGTCGCTCTTCCTCTTCTCGGTGCTCCTGTTCGTGGC GTGTCGTCGCTCTTCCTCTTCTCTGTGCTCCTGTTCGTGGC < 41bp 0.848397606831123 0.517953185483983 0.04815632 0.04218915 prediction 0.66088884269428 Functional Loss - PCDHB14 ENSG00000120327 CDS Human protein_coding chr5:140605186 chr5:140605189 synonymous SNV . 0 24 hm5C_associated_SNPs_51115 0 0 0 0 0 exosome 0.500231643921092 0.500231623899646 0 4.00428936675468e-08 hm5C_site_46467 DeepMRMD:0;iRNA_m5C:4.00428936675468e-08 46468 chr11 33689530 33689530 1 + G T BLCA 33689527 + 33689507 33689547 41 CAGCCAACCTGCACCCCAGCCTGGAGCAGGCCCCGGCGCCC CAGCCAACCTGCACCCCAGCCTGTAGCAGGCCCCGGCGCCC < 41bp 0.838814485493455 0.50837142795869 0.83735913 0.26856756 prediction 0.66088611506953 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33689527 chr11:33689530 stopgain 0.995 1 24 hm5C_associated_SNPs_51116 0 0 0 0 0 exosome 0.500231643921093 0.500231651850569 0.67471826 0 hm5C_site_46468 DeepMRMD:0.67471826;iRNA_m5C:0 46469 chr5 133707328 133707328 1 + G T SARC 133707325 + 133707305 133707345 41 AGGAGGCTCATGCGGGATTTCAAGCGGTAAGGGCCTTCACC AGGAGGCTCATGCGGGATTTCAATCGGTAAGGGCCTTCACC < 41bp 0.843998813070271 0.513565661961082 0.9288691 0.7678269 prediction 0.660866302218378 Functional Loss - UBE2B ENSG00000119048 CDS Human protein_coding chr5:133707325 chr5:133707328 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51117 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.3220844 0 hm5C_site_46469 DeepMRMD:0.3220844;iRNA_m5C:0 46470 chr17 56232784 56232784 1 + G T UCEC 56232781 + 56232761 56232801 41 GTGGACTTCCTCCATGAGACCAAGACGATCTCCTACCAGGG GTGGACTTCCTCCATGAGACCAATACGATCTCCTACCAGGG < 41bp 0.830420039355743 0.471026824386285 0.5343275 0.05049032 prediction 0.660840078711486 Functional Loss - OR4D1 ENSG00000141194 CDS Human protein_coding chr17:56232781 chr17:56232784 nonsynonymous SNV 0.674 1 24 hm5C_associated_SNPs_51118 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.0686549999999999 0 hm5C_site_46470 DeepMRMD:0.0686549999999999;iRNA_m5C:0 46471 chrX 9900373 9900373 1 + G T LUSC 9900370 + 9900350 9900390 41 GGGCCGAGCGGGAACCCTACCTCGAGATTATAGATACTCGG GGGCCGAGCGGGAACCCTACCTCTAGATTATAGATACTCGG < 41bp 0.830358719719248 0.484205193991981 0.35735846 0.51869243 prediction 0.660717439438495 Functional Loss - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9900370 chrX:9900373 nonsynonymous SNV 0.253 1 24 hm5C_associated_SNPs_51119 0 0 0 0 0 cytosol 0.50023164392767 0.500231643921143 0 1.30548905019623e-11 hm5C_site_46471 DeepMRMD:0;iRNA_m5C:1.30548905019623e-11 46472 chr14 74824464 74824464 1 + G T LUAD 74824461 + 74824441 74824481 41 TTCCTGCAGGACAGCTTCCACCGGGGGGGCGTCGTGCCACT TTCCTGCAGGACAGCTTCCACCGTGGGGGCGTCGTGCCACT < 41bp 0.870079481435719 0.53973222324131 0.94090855 0.43267745 prediction 0.660694516388818 Functional Loss - VRTN ENSG00000133980 CDS Human protein_coding chr14:74824461 chr14:74824464 synonymous SNV . 0 24 hm5C_associated_SNPs_51120 0 0 0 0 0 unknown 0.500231643894371 0.500231646049194 0.8818171 0 hm5C_site_46472 DeepMRMD:0.8818171;iRNA_m5C:0 46473 chr9 12694024 12694024 1 + G T COAD 12694021 + 12694001 12694041 41 GTGCTCCTAAACTCCTCTCTCTGGGCTGTATCTTCTTCCCC GTGCTCCTAAACTCCTCTCTCTGTGCTGTATCTTCTTCCCC < 41bp 0.83032831371223 0.472421826039068 0.8824496 0.22867715 prediction 0.66065662742446 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12694021 chr9:12694024 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_51121 0 0 0 0 0 exosome 0.500231643928566 0.500231858415322 0.7648992 0 hm5C_site_46473 DeepMRMD:0.7648992;iRNA_m5C:0 46474 chr17 46025106 46025106 1 + G T rs189494213 46025103 + 46025083 46025123 41 TGGGGTTTCACCATGTTGGCCAGGATTGTCTCCATCTCTTG TGGGGTTTCACCATGTTGGCCAGTATTGTCTCCATCTCTTG < 41bp 0.830299863376706 0.484876527286216 0.7768671 0.03813237 prediction 0.660599726753412 Functional Loss - PNPO ENSG00000263798;ENSG00000264019 ncRNA_intronic Human other chr17:46025103 chr17:46025106 . . 0 24 hm5C_associated_SNPs_51122 1 0 1 0 0 Ribosome 0.500231643921085 0.500231646541966 0.5537342 0 hm5C_site_46474 DeepMRMD:0.5537342;iRNA_m5C:0 Pyridoxal 5'-phosphate-dependent epilepsy Pyridoxal 5'-phosphate-dependent epilepsy 46475 chr1 44435983 44435983 1 + G T LUSC 44435980 + 44435960 44436000 41 TCGCTGGATTTGTCCGCGACCTGGGGTGTGAACGAGTGAGG TCGCTGGATTTGTCCGCGACCTGTGGTGTGAACGAGTGAGG < 41bp 0.848139177413765 0.517860271433374 0.7622833 0.1114105 prediction 0.660557811960781 Functional Loss - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44435980 chr1:44435983 nonsynonymous SNV 0.693 1 24 hm5C_associated_SNPs_51123 0 0 1 0 2 nucleolus 0.500231496491164 0.502244725615362 0.5245666 0 hm5C_site_46475 DeepMRMD:0.5245666;iRNA_m5C:0 46476 chrX 21875401 21875401 1 + G T LGG 21875398 + 21875378 21875418 41 GCGGCTGCGAAAAGATGTTCCGGGATTACGCCGCCATGAGA GCGGCTGCGAAAAGATGTTCCGGTATTACGCCGCCATGAGA < 41bp 0.83027670040076 0.481124876737077 0.8970252 0.34388062 prediction 0.660553400801519 Functional Loss - YY2 ENSG00000230797 CDS Human protein_coding chrX:21875398 chrX:21875401 nonsynonymous SNV 0.205 2 24 hm5C_associated_SNPs_51124 0 0 1 0 0 exosome 0.500231643921068 0.500231643921092 0.7940504 0 hm5C_site_46476 DeepMRMD:0.7940504;iRNA_m5C:0 46477 chr3 169540344 169540344 1 + G T SKCM 169540341 + 169540321 169540361 41 AGAAGAGATCGGACACCTGACGGGGCTGCAGAAGTTCTATA AGAAGAGATCGGACACCTGACGGTGCTGCAGAAGTTCTATA < 41bp 0.863094752335747 0.532819538512017 0.88402593 0.3368873 prediction 0.660550427647459 Functional Loss - LRRIQ4 ENSG00000188306 CDS Human protein_coding chr3:169540341 chr3:169540344 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51125 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.76805186 0 hm5C_site_46477 DeepMRMD:0.76805186;iRNA_m5C:0 46478 chr17 29325738 29325738 1 + G T UCEC 29325735 + 29325715 29325755 41 TCCTGCAGCCTGGAGGTGTCCAAGGATTCCCGTACAGTGAC TCCTGCAGCCTGGAGGTGTCCAATGATTCCCGTACAGTGAC < 41bp 0.85571435936613 0.525451744379571 0.6882363 0.15394303 prediction 0.660525229973119 Functional Loss - RNF135 ENSG00000181481 CDS Human protein_coding chr17:29325735 chr17:29325738 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51126 0 0 0 1 1 Ribosome 0.500231643922191 0.500231643921093 0.3764726 2.19668727652333e-12 hm5C_site_46478 DeepMRMD:0.3764726;iRNA_m5C:2.19668727652333e-12 46479 chr2 101097629 101097629 1 + G T OV 101097626 + 101097606 101097646 41 GGACGACCCTTTTTCCTTTTCAGGGTATAGCATGTTTTCTC GGACGACCCTTTTTCCTTTTCAGTGTATAGCATGTTTTCTC < 41bp 0.843009095200422 0.512760846035747 0.91941 0.21733597 prediction 0.66049649832935 Functional Loss - NMS ENSG00000204640 CDS Human protein_coding chr2:101097626 chr2:101097629 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51127 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0.83882 0 hm5C_site_46479 DeepMRMD:0.83882;iRNA_m5C:0 46480 chr19 36120133 36120133 1 + G T LIHC 36120130 + 36120110 36120150 41 CCGGGTCCTGGCGCTGGCATCCCGGGCAAAAGCGGCGAGGA CCGGGTCCTGGCGCTGGCATCCCTGGCAAAAGCGGCGAGGA < 41bp 0.848743588698762 0.518532062049262 0.8625793 0.19327053 prediction 0.660423053299 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36120130 chr19:36120133 synonymous SNV . 0 24 hm5C_associated_SNPs_51128 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.7251586 0 hm5C_site_46480 DeepMRMD:0.7251586;iRNA_m5C:0 46481 chrX 102884976 102884976 1 + G T LUSC 102884973 + 102884953 102884993 41 CAGTCTTCGGAGGAGCAGTCCTCGGAGGAGGAGTTCTTTCC CAGTCTTCGGAGGAGCAGTCCTCTGAGGAGGAGTTCTTTCC < 41bp 0.859613794062138 0.529408160116336 0.45565963 0.74772024 prediction 0.660411267891603 Functional Loss - TCEAL1 ENSG00000172465 CDS Human protein_coding chrX:102884973 chrX:102884976 synonymous SNV . 0 24 hm5C_associated_SNPs_51129 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_46481 DeepMRMD:0;iRNA_m5C:0 46482 chr1 117603109 117603109 1 + G T LUSC 117603106 + 117603086 117603126 41 GCTTTCTTAAGACCGGCGTCCGCGATGGCCCGAATAAAGGA GCTTTCTTAAGACCGGCGTCCGCTATGGCCCGAATAAAGGA < 41bp 0.841818272069544 0.511640721279914 0.17899823 0.09145576 prediction 0.660355101579261 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117603106 chr1:117603109 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51130 0 0 1 0 2 Nucleus 0.500231643933715 0.500231643977529 0 0 hm5C_site_46482 DeepMRMD:0;iRNA_m5C:0 46483 chr9 101797411 101797411 1 + G T UCEC 101797408 + 101797388 101797428 41 ACCCCCTGGGCCCCCAGGCCCTGGATGCACAATGGGACTTG ACCCCCTGGGCCCCCAGGCCCTGTATGCACAATGGGACTTG < 41bp 0.851332190246773 0.521162245031989 0.8832644 0.17102614 prediction 0.660339890429567 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101797408 chr9:101797411 nonsynonymous SNV 0.966 3 24 hm5C_associated_SNPs_51131 0 0 0 0 1 Endoplasmic reticulum 0.500231644880269 0.500231643921092 0.7665288 1.9183541422052e-09 hm5C_site_46483 DeepMRMD:0.7665288;iRNA_m5C:1.9183541422052e-09 46484 chr1 215781456 215781456 1 + G T GBM 215781453 + 215781433 215781473 41 TCTACTCCTTTAGCGTCATTCAAGATACTATCCCTGGAGGA TCTACTCCTTTAGCGTCATTCAATATACTATCCCTGGAGGA < 41bp 0.847859034464036 0.517694158560418 0.36717764 0.2775575 prediction 0.660329751807236 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215781453 chr1:215781456 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_51132 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643934728 0 0 hm5C_site_46484 DeepMRMD:0;iRNA_m5C:0 46485 chr16 10574756 10574756 1 + G T OV 10574753 + 10574733 10574773 41 CAGAAAGTCCAGTATCCCCCCTGGAGTCACATTCGAAAGCT CAGAAAGTCCAGTATCCCCCCTGTAGTCACATTCGAAAGCT < 41bp 0.845815888444518 0.515654626383363 0.2604686 0.09808263 prediction 0.660322524122311 Functional Loss - ATF7IP2 ENSG00000166669 CDS Human protein_coding chr16:10574753 chr16:10574756 stopgain 0.137 0 24 hm5C_associated_SNPs_51133 0 0 0 0 2 Nucleus 0.500231643921303 0.500231643921062 0 4.82724971107018e-13 hm5C_site_46485 DeepMRMD:0;iRNA_m5C:4.82724971107018e-13 46486 chr1 53927181 53927181 1 + G T LUAD 53927178 + 53927158 53927198 41 ACATCAACCCGGACCGTGCACTGGGCCCTGAGTACCCTGGT ACATCAACCCGGACCGTGCACTGTGCCCTGAGTACCCTGGT < 41bp 0.87076339008801 0.54062405857242 0.5895364 0.103913635 prediction 0.660278663031181 Functional Loss - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53927178 chr1:53927181 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_51134 0 0 0 0 1 unknown 0.500231637315838 0.500233842892679 0.1790728 0 hm5C_site_46486 DeepMRMD:0.1790728;iRNA_m5C:0 46487 chr16 81301622 81301622 1 + G T UCEC 81301619 + 81301599 81301639 41 TACCACAGCTTTGGAGTCACCGAGAACTATGTCATCTTCCT TACCACAGCTTTGGAGTCACCGATAACTATGTCATCTTCCT < 41bp 0.861613609358891 0.531494491484427 0.6270545 0.18496737 prediction 0.660238235748928 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81301619 chr16:81301622 nonsynonymous SNV 0.963 2 24 hm5C_associated_SNPs_51135 0 0 0 0 0 exosome 0.500231643921085 0.500231643920423 0.254109 1.32382993456304e-12 hm5C_site_46487 DeepMRMD:0.254109;iRNA_m5C:1.32382993456304e-12 46488 chr3 128060192 128060192 1 + G T OV 128060189 + 128060169 128060209 41 GACCCTAAGCTGCTGGAGCGCGGGTTGGTGTGTGCCCCCGA GACCCTAAGCTGCTGGAGCGCGGTTTGGTGTGTGCCCCCGA < 41bp 0.840461595190927 0.510363732195441 0.68405885 0.37284225 prediction 0.660195725990971 Functional Loss - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:128060189 chr3:128060192 synonymous SNV . 0 24 hm5C_associated_SNPs_51136 0 0 0 0 0 Cytosol 0.500231643932993 0.500231643921108 0.3681177 2.37703190464345e-11 hm5C_site_46488 DeepMRMD:0.3681177;iRNA_m5C:2.37703190464345e-11 46489 chr9 125486317 125486317 1 + G T HNSC 125486314 + 125486294 125486334 41 GCACCTCAGGCTTCATCCTCCTGGGCCTCTCTTCCAACCCT GCACCTCAGGCTTCATCCTCCTGTGCCTCTCTTCCAACCCT < 41bp 0.847319879673115 0.517224786702233 0.44668937 0.07621956 prediction 0.660190185941763 Functional Loss - OR1L4 ENSG00000136939 CDS Human protein_coding chr9:125486314 chr9:125486317 nonsynonymous SNV 0.040 4 24 hm5C_associated_SNPs_51137 0 0 0 0 0 unknown 0.500231643921092 0.500231643905738 0 3.0708324771922e-11 hm5C_site_46489 DeepMRMD:0;iRNA_m5C:3.0708324771922e-11 46490 chr2 242147042 242147042 1 + A C UCEC 242147038 + 242147018 242147058 41 TCGAGATGTGCCCACTTTGCCTCGACTGCCCTTTCTGGCTG TCGAGATGTGCCCACTTTGCCTCGCCTGCCCTTTCTGGCTG < 41bp 0.878434107134819 0.548344203046974 0.28847507 0.14714128 prediction 0.66017980817569 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242147038 chr2:242147042 nonsynonymous SNV 0.021 0 25 hm5C_associated_SNPs_51138 0 0 0 0 2 chromatin 0.500231683519763 0.500232107145352 0 0 hm5C_site_46490 DeepMRMD:0;iRNA_m5C:0 46491 chr14 37145603 37145603 1 + G T UCEC 37145600 + 37145580 37145620 41 ATTCCGGCATCGCTGGCGTTCAAGGGAATGCAGGCAGCCAG ATTCCGGCATCGCTGGCGTTCAATGGAATGCAGGCAGCCAG < 41bp 0.830085793692014 0.482834907254693 0.91708183 0.8219764 prediction 0.660171587384027 Functional Loss - PAX9 ENSG00000198807 CDS Human protein_coding chr14:37145600 chr14:37145603 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51139 0 0 0 0 0 chromatin 0.50023164394588 0.500231643924138 0.19021086 4.34838831608886e-11 hm5C_site_46491 DeepMRMD:0.19021086;iRNA_m5C:4.34838831608886e-11 46492 chr4 185941492 185941492 1 + G T LUSC 185941489 + 185941469 185941509 41 ACCACGAGTGCATGAAGAACCTGGTGCATTACCTCACCACG ACCACGAGTGCATGAAGAACCTGTTGCATTACCTCACCACG < 41bp 0.830079339088113 0.478153427218389 0.47627488 0.19473752 prediction 0.660158678176227 Functional Loss - HELT ENSG00000187821 CDS Human protein_coding chr4:185941489 chr4:185941492 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51140 0 0 0 0 2 exosome 0.500231081760088 0.500230912969343 0 3.37581489429084e-07 hm5C_site_46492 DeepMRMD:0;iRNA_m5C:3.37581489429084e-07 46493 chr7 154735807 154735807 1 + G T GBM 154735804 + 154735784 154735824 41 GCGCAGCAGCTCCTCGCCAGCCAGACAGCCAGCCCCGCACC GCGCAGCAGCTCCTCGCCAGCCATACAGCCAGCCCCGCACC < 41bp 0.863958295213937 0.533888615520257 0.40690196 0.09309223 prediction 0.66013935938736 Functional Loss - PAXIP1-AS2 ENSG00000214106 CDS Human antisense chr7:154735804 chr7:154735807 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_51141 0 0 0 0 1 unknown 0.500231643835108 0.50023164392294 0 0 hm5C_site_46493 DeepMRMD:0;iRNA_m5C:0 46494 chr8 133906153 133906153 1 + A C rs111363334 133906149 + 133906129 133906169 41 TTTCTGCGTGGGAGTGATTACGCCATTCGCCTGGCGGCTCA TTTCTGCGTGGGAGTGATTACGCCCTTCGCCTGGCGGCTCA < 41bp 0.830064274305057 0.477782298640861 0.88429105 0.3370272 prediction 0.660128548610115 Functional Loss - TG ENSG00000042832 CDS Human protein_coding chr8:133906149 chr8:133906153 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_51142 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0.7685821 0 hm5C_site_46494 DeepMRMD:0.7685821;iRNA_m5C:0 46495 chr2 48018102 48018102 1 + G T UCEC 48018099 + 48018079 48018119 41 CCAGGAGATTTGGTTTGGGCCAAGATGGAGGGTTACCCCTG CCAGGAGATTTGGTTTGGGCCAATATGGAGGGTTACCCCTG < 41bp 0.852046216513594 0.522010044078551 0.733453 0.4444609 prediction 0.660072344870085 Functional Loss - MSH6 ENSG00000116062 CDS Human protein_coding chr2:48018099 chr2:48018102 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51143 1 0 1 0 1 Nucleus 0.500231643921092 0.500231643921027 0.466906 1.30562227695918e-13 hm5C_site_46495 DeepMRMD:0.466906;iRNA_m5C:1.30562227695918e-13 Lynch syndrome Lynch syndrome 46496 chr3 108072408 108072408 1 + G T UCEC 108072405 + 108072385 108072425 41 TCGTAATACACTGGAAGTATCAAGATAGCTATAAGGTTCAC TCGTAATACACTGGAAGTATCAATATAGCTATAAGGTTCAC < 41bp 0.847904750113866 0.51787955653083 0.7020299 0.076483786 prediction 0.660050387166071 Functional Loss - HHLA2 ENSG00000114455 CDS Human protein_coding chr3:108072405 chr3:108072408 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_51144 0 0 0 0 0 exosome 0.500231645592142 0.500232463368856 0.4040598 0 hm5C_site_46496 DeepMRMD:0.4040598;iRNA_m5C:0 46497 chr2 176996289 176996289 1 + A C UCEC 176996285 + 176996265 176996305 41 GGAGGTGAAGGACGGGGAAACGAAAAAGGAAGCCCAAGAGC GGAGGTGAAGGACGGGGAAACGAACAAGGAAGCCCAAGAGC < 41bp 0.851517073279722 0.521508319784065 0.63385946 0.5496212 prediction 0.660017506991314 Functional Loss - HOXD8 ENSG00000175879 CDS Human protein_coding chr2:176996285 chr2:176996289 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_51145 0 0 0 0 0 Cytosol 0.500231643921085 0.500231643901119 0.16847652 3.99322797051127e-11 hm5C_site_46497 DeepMRMD:0.16847652;iRNA_m5C:3.99322797051127e-11 46498 chr22 35811893 35811893 1 + G T UCEC 35811890 + 35811870 35811910 41 GTGATGAGGGACCCTTCGTCCCGGAATTTCATCATGGAGGG GTGATGAGGGACCCTTCGTCCCGTAATTTCATCATGGAGGG < 41bp 0.829975676108678 0.469322350346086 0.40385413 0.2085802 prediction 0.659951352217355 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811890 chr22:35811893 synonymous SNV . 0 24 hm5C_associated_SNPs_51146 0 0 1 0 2 Cytosol 0.500231643919236 0.500229733261306 0 3.82131586129653e-06 hm5C_site_46498 DeepMRMD:0;iRNA_m5C:3.82131586129653e-06 46499 chr9 35044150 35044150 1 + G T UCEC 35044147 + 35044127 35044167 41 ATGGGGCAGAAAGAGAACCTCTGGGCATCTGATTCCCCAGA ATGGGGCAGAAAGAGAACCTCTGTGCATCTGATTCCCCAGA < 41bp 0.829975038826709 0.459009616697839 0.119778305 0.03210607 prediction 0.659950077653417 Functional Loss - C9orf131 ENSG00000174038 CDS Human protein_coding chr9:35044147 chr9:35044150 nonsynonymous SNV 0.163 1 24 hm5C_associated_SNPs_51147 0 0 0 0 0 exosome 0.500231645787552 0.500231645371057 0 8.32990343369033e-10 hm5C_site_46499 DeepMRMD:0;iRNA_m5C:8.32990343369033e-10 46500 chr1 68152224 68152224 1 + G T LUAD 68152221 + 68152201 68152241 41 GACCGACGCTGGCCCCGCGGCGAGCGAGGGCGCCGAGCAGC GACCGACGCTGGCCCCGCGGCGATCGAGGGCGCCGAGCAGC < 41bp 0.829931765195639 0.475381564704003 0.6008656 0.19191062 prediction 0.659863530391279 Functional Loss - GADD45A ENSG00000116717 CDS Human protein_coding chr1:68152221 chr1:68152224 nonsynonymous SNV 0.836 0 24 hm5C_associated_SNPs_51148 0 0 1 0 1 Cytosol 0.500231643966324 0.500231644310129 0.2017312 0 hm5C_site_46500 DeepMRMD:0.2017312;iRNA_m5C:0 46501 chr5 140554246 140554246 1 + G T COAD 140554243 + 140554223 140554263 41 TCGTACCAGCTGCTCAAGGCCACGGAGCCCGGGCTATTCGG TCGTACCAGCTGCTCAAGGCCACTGAGCCCGGGCTATTCGG < 41bp 0.863890113893902 0.533973759404004 0.6138303 0.65499485 prediction 0.659832708979795 Functional Loss - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140554243 chr5:140554246 synonymous SNV . 0 24 hm5C_associated_SNPs_51149 0 0 0 0 0 exosome 0.500231643887585 0.500231643932069 0 0 hm5C_site_46501 DeepMRMD:0;iRNA_m5C:0 46502 chr2 15753382 15753382 1 + G T LUAD 15753379 + 15753359 15753399 41 TAATTGGAGGTGTTGCAGCCCGGGATCAGCTCTCTGTTTTG TAATTGGAGGTGTTGCAGCCCGGTATCAGCTCTCTGTTTTG < 41bp 0.856894985298721 0.527021956578831 0.88954395 0.28210002 prediction 0.659746057439779 Functional Loss - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15753379 chr2:15753382 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_51150 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921093 0.7790879 0 hm5C_site_46502 DeepMRMD:0.7790879;iRNA_m5C:0 46503 chrX 49105127 49105127 1 + G T UCEC 49105124 + 49105104 49105144 41 CTCGACGGCTGGCAGAGATCCAAGAACTGCACCAGAGTGTC CTCGACGGCTGGCAGAGATCCAATAACTGCACCAGAGTGTC < 41bp 0.829863738407102 0.466824959405033 0.82216287 0.2891516 prediction 0.659727476814205 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49105124 chrX:49105127 stopgain 0.998 0 24 hm5C_associated_SNPs_51151 0 0 1 0 2 Cytosol 0.50023164392284 0.500231643921092 0.64432574 3.49542617072984e-12 hm5C_site_46503 DeepMRMD:0.64432574;iRNA_m5C:3.49542617072984e-12 46504 chr1 246823612 246823612 1 + G T UCEC 246823609 + 246823589 246823629 41 CTAAGCGAAGAGTGAGATTCCAAGAAATAGACGATAGCTTG CTAAGCGAAGAGTGAGATTCCAATAAATAGACGATAGCTTG < 41bp 0.845772001930637 0.5159122750149 0.26381487 0.10328862 prediction 0.659719453831475 Functional Loss - CNST ENSG00000162852 CDS Human protein_coding chr1:246823609 chr1:246823612 stopgain 0.998 1 24 hm5C_associated_SNPs_51152 0 0 0 0 1 Ribosome 0.500231658154984 0.500231643920303 0 2.84693628671562e-08 hm5C_site_46504 DeepMRMD:0;iRNA_m5C:2.84693628671562e-08 46505 chr5 140783125 140783125 1 + G T LUSC 140783122 + 140783102 140783142 41 GTGCTGGAGCGCGCCCTGGACAGGGAGGAGGCAACTGCCCA GTGCTGGAGCGCGCCCTGGACAGTGAGGAGGCAACTGCCCA < 41bp 0.867028894408103 0.537171737500845 0.8938376 0.41467398 prediction 0.659714313814517 Functional Loss - PCDHGA9 ENSG00000261934 CDS Human protein_coding chr5:140783122 chr5:140783125 nonsynonymous SNV 0.937 2 24 hm5C_associated_SNPs_51153 0 0 0 0 0 exosome 0.500231643921092 0.500231642227314 0.7876752 3.38755712370187e-09 hm5C_site_46505 DeepMRMD:0.7876752;iRNA_m5C:3.38755712370187e-09 46506 chr16 90106785 90106785 1 + G T UCEC 90106782 + 90106762 90106802 41 GTGCAGCAGAAGACAGGGTTCAAGAACCTCGTGCTAGAACG GTGCAGCAGAAGACAGGGTTCAATAACCTCGTGCTAGAACG < 41bp 0.829847102295076 0.477554637082747 0.28912878 0.2540608 prediction 0.659694204590153 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90106782 chr16:90106785 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51154 0 0 1 0 1 Ribosome 0.500226267008447 0.500231632215762 0 0 hm5C_site_46506 DeepMRMD:0;iRNA_m5C:0 46507 chr15 40683726 40683726 1 + G T COAD 40683723 + 40683703 40683743 41 GTGAGACCCTGGCATCACGACAAGAATCCACTACTGATCAC GTGAGACCCTGGCATCACGACAATAATCCACTACTGATCAC < 41bp 0.829840846058682 0.480701962977911 0.28699666 0.22636554 prediction 0.659681692117364 Functional Loss - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40683723 chr15:40683726 stopgain 0.114 0 24 hm5C_associated_SNPs_51155 0 0 1 0 2 Ribosome 0.500231643920987 0.500231643915222 0 1.15294440661273e-11 hm5C_site_46507 DeepMRMD:0;iRNA_m5C:1.15294440661273e-11 46508 chr6 137243890 137243890 1 + G T UCEC 137243887 + 137243867 137243907 41 CTGCCCATGTACGTGGTCTTCAAGCGCTGCCTGCCCCTGGT CTGCCCATGTACGTGGTCTTCAATCGCTGCCTGCCCCTGGT < 41bp 0.829840590711775 0.479315137352724 0.8931576 0.5211611 prediction 0.659681181423549 Functional Loss - SLC35D3 ENSG00000182747 CDS Human protein_coding chr6:137243887 chr6:137243890 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51156 0 0 0 0 0 exosome 0.500231643921093 0.500231643921093 0.743993 2.22044604925031e-16 hm5C_site_46508 DeepMRMD:0.743993;iRNA_m5C:2.22044604925031e-16 46509 chr15 66180086 66180086 1 + A C UCEC 66180082 + 66180062 66180102 41 AAGCAAATGTCAGACAGACGCGAAAATGACATGTCTCCAAG AAGCAAATGTCAGACAGACGCGAACATGACATGTCTCCAAG < 41bp 0.854262706468102 0.524451878640269 0.28481486 0.1770828 prediction 0.659621655655666 Functional Loss - RAB11A ENSG00000103769 CDS Human protein_coding chr15:66180082 chr15:66180086 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51157 0 0 1 0 2 Ribosome 0.500231630016522 0.500276565728171 0 0 hm5C_site_46509 DeepMRMD:0;iRNA_m5C:0 46510 chr18 13826402 13826402 1 + G T READ 13826399 + 13826379 13826419 41 CATACACATGTTCCTCCTGGCGCGGACTCACGTCAAGCGGA CATACACATGTTCCTCCTGGCGCTGACTCACGTCAAGCGGA < 41bp 0.860466980165705 0.530680793666316 0.63831335 0.32842016 prediction 0.659572372998777 Functional Loss - MC5R ENSG00000176136 CDS Human protein_coding chr18:13826399 chr18:13826402 nonsynonymous SNV 0.062 2 24 hm5C_associated_SNPs_51158 0 0 0 0 0 unknown 0.500231645282367 0.500231367085755 0.2766267 5.56393222606033e-07 hm5C_site_46510 DeepMRMD:0.2766267;iRNA_m5C:5.56393222606033e-07 46511 chr6 116720707 116720707 1 + G T BLCA 116720704 + 116720684 116720724 41 CCCAAGGACTACAGTGCCCGCTGGAATGAAATTTTTGGAAA CCCAAGGACTACAGTGCCCGCTGTAATGAAATTTTTGGAAA < 41bp 0.831108363122894 0.501367244801441 0.25685608 0.1528 prediction 0.659482236642905 Functional Loss - DSE ENSG00000111817 CDS Human protein_coding chr6:116720704 chr6:116720707 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51159 0 0 1 0 0 nucleolus 0.500231643921011 0.500231643921091 0 0 hm5C_site_46511 DeepMRMD:0;iRNA_m5C:0 46512 chr2 7160760 7160760 1 + G T LUSC 7160757 + 7160737 7160777 41 CTGCAAAGCCAGCTGGCACCCTGGCCAGGGCTGCCCGGAGA CTGCAAAGCCAGCTGGCACCCTGTCCAGGGCTGCCCGGAGA < 41bp 0.829714976874852 0.478524724487731 0.1189723 0.16828421 prediction 0.659429953749704 Functional Loss - RNF144A ENSG00000151692 CDS Human protein_coding chr2:7160757 chr2:7160760 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51160 0 0 1 0 1 Nucleus 0.500231643991482 0.500231643908212 0 1.66541447299551e-10 hm5C_site_46512 DeepMRMD:0;iRNA_m5C:1.66541447299551e-10 46513 chr17 33507617 33507617 1 + G T UCEC 33507614 + 33507594 33507634 41 GAGAGGGCCTTGCCAGACATCGAGAACTACATGTTTGAGAA GAGAGGGCCTTGCCAGACATCGATAACTACATGTTTGAGAA < 41bp 0.829698558496174 0.477346743157998 0.8319833 0.31254804 prediction 0.659397116992348 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33507614 chr17:33507617 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_51161 0 0 0 0 2 Nucleus 0.500231643985244 0.500231643975682 0.6639666 1.91235915991683e-11 hm5C_site_46513 DeepMRMD:0.6639666;iRNA_m5C:1.91235915991683e-11 46514 chr11 103907643 103907643 1 + G T STAD 103907640 + 103907620 103907660 41 GACTTTGAGCTCCGAAACTTCAAGGTCCTCTGCGAAGCGGA GACTTTGAGCTCCGAAACTTCAATGTCCTCTGCGAAGCGGA < 41bp 0.829689087656305 0.472301843966068 0.40111303 0.030569047 prediction 0.65937817531261 Functional Loss - DDI1 ENSG00000170962;ENSG00000170967 CDS Human other chr11:103907640 chr11:103907643 nonsynonymous SNV 0.062 2 24 hm5C_associated_SNPs_51162 0 0 0 0 0 exosome 0.500231643921093 0.500231302043918 0 6.83754348917986e-07 hm5C_site_46514 DeepMRMD:0;iRNA_m5C:6.83754348917986e-07 46515 chr17 73811302 73811302 1 + G T BLCA 73811299 + 73811279 73811319 41 GCAGCAGTCGGGCAGCTGTCCCCGAGGACCCTTCTGCGCCT GCAGCAGTCGGGCAGCTGTCCCCTAGGACCCTTCTGCGCCT < 41bp 0.829687753747681 0.464200902191967 0.38804668 0.051997215 prediction 0.659375507495362 Functional Loss - UNK ENSG00000132478 CDS Human protein_coding chr17:73811299 chr17:73811302 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51163 0 0 1 0 2 Cytosol 0.500231641748784 0.500231697324458 0 0 hm5C_site_46515 DeepMRMD:0;iRNA_m5C:0 46516 chr7 143079497 143079497 1 + A C rs566953376 143079493 + 143079473 143079513 41 TCCCTTCCCCGCCGCCTCCTCCGGAGGAGGAGGGAGGGCCT TCCCTTCCCCGCCGCCTCCTCCGGCGGAGGAGGGAGGGCCT < 41bp 0.860379970405099 0.53072240846659 0.88945806 0.8742155 prediction 0.659315123877017 Functional Loss - ZYX ENSG00000159840 CDS Human protein_coding chr7:143079493 chr7:143079497 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_51164 0 0 1 0 1 Ribosome 0.500231642278311 0.500231643919594 0.03048512 0 hm5C_site_46516 DeepMRMD:0.03048512;iRNA_m5C:0 46517 chr15 40662274 40662274 1 + G T SARC 40662271 + 40662251 40662291 41 TGGGTGTGTCCCCAGATGACCTGGATGACACTGGGCAGCCA TGGGTGTGTCCCCAGATGACCTGTATGACACTGGGCAGCCA < 41bp 0.850446850456114 0.520796619893017 0.35783502 0.046971917 prediction 0.659300461126195 Functional Loss - DISP2 ENSG00000140323 CDS Human protein_coding chr15:40662271 chr15:40662274 nonsynonymous SNV 0.754 1 24 hm5C_associated_SNPs_51165 0 0 0 0 0 nucleus 0.500230949872465 0.500231611844318 0 0 hm5C_site_46517 DeepMRMD:0;iRNA_m5C:0 46518 chr9 124094780 124094780 1 + G T PRAD 124094777 + 124094757 124094797 41 CGCCCATCACCGTGGTGAAGCAAGGCTTTGAGCCTCCCTCC CGCCCATCACCGTGGTGAAGCAATGCTTTGAGCCTCCCTCC < 41bp 0.829645791685991 0.483514051225361 0.85107255 0.19990483 prediction 0.659291583371982 Functional Loss - GSN ENSG00000148180 CDS Human protein_coding chr9:124094777 chr9:124094780 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_51166 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643983653 0.7021451 0 hm5C_site_46518 DeepMRMD:0.7021451;iRNA_m5C:0 46519 chr7 75933446 75933446 1 + G T LUAD 75933443 + 75933423 75933463 41 CCTTCGAGTCGCGGGCCCAGCTTGGGGGCCCAGAAGCTGCA CCTTCGAGTCGCGGGCCCAGCTTTGGGGCCCAGAAGCTGCA < 41bp 0.829630519396704 0.482330988412812 0.1209515 0.03204325 prediction 0.659261038793409 Functional Loss - HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933443 chr7:75933446 nonsynonymous SNV 0.837 4 24 hm5C_associated_SNPs_51167 1 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_46519 DeepMRMD:0;iRNA_m5C:0 not specified not specified 46520 chr2 241808604 241808604 1 + G T SARC 241808601 + 241808581 241808621 41 ATGCAGATCATGGACGAGATCAAGGAAGGCATCCAGTACGT ATGCAGATCATGGACGAGATCAATGAAGGCATCCAGTACGT < 41bp 0.866851702328392 0.53722279320809 0.27546573 0.014988065 prediction 0.659257818240604 Functional Loss - AGXT ENSG00000172482 CDS Human protein_coding chr2:241808601 chr2:241808604 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_51168 0 0 0 0 1 Cytosol 0.500231085517013 0.500231642855232 0 0 hm5C_site_46520 DeepMRMD:0;iRNA_m5C:0 46521 chr19 746420 746420 1 + G T LUAD 746417 + 746397 746437 41 CACGGCCGGGGCGGCAGAGACCCGGGGGGCTGTGGAGGGGG CACGGCCGGGGCGGCAGAGACCCTGGGGGCTGTGGAGGGGG < 41bp 0.82962746709123 0.473092348592895 0.9186528 0.88227767 prediction 0.659254934182461 Functional Loss - PALM ENSG00000099864 CDS Human protein_coding chr19:746417 chr19:746420 nonsynonymous SNV 0.551 0 24 hm5C_associated_SNPs_51169 0 0 0 0 0 Cytosol 0.500231635195636 0.500231643921089 0.0727502600000001 0 hm5C_site_46521 DeepMRMD:0.0727502600000001;iRNA_m5C:0 46522 chr1 17681153 17681153 1 + G T LUSC 17681150 + 17681130 17681170 41 GGCAAGGAATACCCGCTGGGCAGGATTCTCTTCGGGGACAG GGCAAGGAATACCCGCTGGGCAGTATTCTCTTCGGGGACAG < 41bp 0.852058083570924 0.522437244892411 0.16762584 0.064536065 prediction 0.659241677357026 Functional Loss - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17681150 chr1:17681153 nonsynonymous SNV 0.980 4 24 hm5C_associated_SNPs_51170 0 0 0 0 1 exosome 0.500231643934281 0.500231643921092 0 2.63762345298346e-11 hm5C_site_46522 DeepMRMD:0;iRNA_m5C:2.63762345298346e-11 46523 chr5 140800954 140800954 1 + G T STAD 140800951 + 140800931 140800971 41 TGGGCAATATCTCCAAGGACCTGGGGCTGGAGCCCCGGGAG TGGGCAATATCTCCAAGGACCTGTGGCTGGAGCCCCGGGAG < 41bp 0.829607924303699 0.458633376350549 0.9214152 0.3383261 prediction 0.659215848607397 Functional Loss - PCDHGA11 ENSG00000253873 CDS Human protein_coding chr5:140800951 chr5:140800954 nonsynonymous SNV 0.888 3 24 hm5C_associated_SNPs_51171 0 0 1 0 0 exosome 0.500231643921092 0.500231643920774 0.8428304 6.36601882320065e-13 hm5C_site_46523 DeepMRMD:0.8428304;iRNA_m5C:6.36601882320065e-13 46524 chr21 39671642 39671642 1 + G T GBM 39671639 + 39671619 39671659 41 TTGGTTGCTCAGTTGGTCATCACGACCTTGATTGAGATCTT TTGGTTGCTCAGTTGGTCATCACTACCTTGATTGAGATCTT < 41bp 0.829603513709484 0.480462323454258 0.16367158 0.07294184 prediction 0.659207027418969 Functional Loss - KCNJ15 ENSG00000157551 CDS Human protein_coding chr21:39671639 chr21:39671642 synonymous SNV . 0 24 hm5C_associated_SNPs_51172 0 0 0 0 0 exosome 0.500231643888611 0.500231643921092 0 0 hm5C_site_46524 DeepMRMD:0;iRNA_m5C:0 46525 chr9 104170256 104170256 1 + A C UCEC 104170252 + 104170232 104170272 41 ATGAGGAGCCAACTGTAAAACAAGAGATTGAAGAAATTGAG ATGAGGAGCCAACTGTAAAACAAGCGATTGAAGAAATTGAG < 41bp 0.850132533174921 0.520592251921558 0.2768671 0.24376926 prediction 0.659080562506726 Functional Loss - ZNF189 ENSG00000136870 CDS Human protein_coding chr9:104170252 chr9:104170256 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51173 0 0 1 0 1 chromatin 0.500231643921093 0.500231643921092 0 1.77635683940025e-15 hm5C_site_46525 DeepMRMD:0;iRNA_m5C:1.77635683940025e-15 46526 chr10 105184934 105184934 1 + G T LUAD 105184931 + 105184911 105184951 41 AACCCTCAAGACCACAGAACCAGGAGTGACTGGCCTTCTTT AACCCTCAAGACCACAGAACCAGTAGTGACTGGCCTTCTTT < 41bp 0.829530887340419 0.487196204988121 0.9421598 0.90178907 prediction 0.659061774680838 Functional Loss - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105184931 chr10:105184934 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_51174 0 0 1 0 0 Nucleus 0.500231643605529 0.500231643921092 0.08074146 0 hm5C_site_46526 DeepMRMD:0.08074146;iRNA_m5C:0 46527 chr13 25265367 25265367 1 + G T UCEC 25265364 + 25265344 25265384 41 ATCATTGTGGCCAATGTGCCCGAGGGCCTCCTGGCCACTGT ATCATTGTGGCCAATGTGCCCGATGGCCTCCTGGCCACTGT < 41bp 0.871363968035235 0.541845159589178 0.8241354 0.035576284 prediction 0.659037616892114 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25265364 chr13:25265367 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_51175 0 0 0 0 1 Nucleus 0.500231643921135 0.500231643921092 0.6482708 8.57092175010621e-14 hm5C_site_46527 DeepMRMD:0.6482708;iRNA_m5C:8.57092175010621e-14 46528 chr11 65088569 65088569 1 + G T TGCT 65088566 + 65088546 65088586 41 GGGCAAGTTCCACCTCCTGCCGGGGACCATGGTGGAGGGGC GGGCAAGTTCCACCTCCTGCCGGTGACCATGGTGGAGGGGC < 41bp 0.829505175368557 0.462618187530834 0.8979919 0.2710759 prediction 0.659010350737113 Functional Loss - CDC42EP2 ENSG00000149798 CDS Human protein_coding chr11:65088566 chr11:65088569 nonsynonymous SNV 0.324 5 24 hm5C_associated_SNPs_51176 0 0 0 0 0 Cytosol 0.500231643930268 0.500231643921092 0.7959838 1.83502102402144e-11 hm5C_site_46528 DeepMRMD:0.7959838;iRNA_m5C:1.83502102402144e-11 46529 chr17 37822210 37822210 1 + G T SARC 37822207 + 37822187 37822227 41 CCATCCAGCTTCAGGAGCTGCTGGCGCTGGAGACAGCCCTG CCATCCAGCTTCAGGAGCTGCTGTCGCTGGAGACAGCCCTG < 41bp 0.829497570193407 0.469185698260178 0.22527957 0.074361205 prediction 0.658995140386815 Functional Loss - TCAP ENSG00000173991 CDS Human protein_coding chr17:37822207 chr17:37822210 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_51177 0 0 0 0 0 Endoplasmic reticulum 0.500234052397338 0.500171382391464 0 0.000125340011748465 hm5C_site_46529 DeepMRMD:0;iRNA_m5C:0.000125340011748465 46530 chr1 110882461 110882461 1 + G T LUSC 110882458 + 110882438 110882478 41 GGGCGAATCGCGCAGCAGCTCCCGGGGTGGAGGCGGGGAGT GGGCGAATCGCGCAGCAGCTCCCTGGGTGGAGGCGGGGAGT < 41bp 0.849705308220504 0.520260914947909 0.588428 0.31624907 prediction 0.658888786545191 Functional Loss - RBM15 ENSG00000162775 CDS Human protein_coding chr1:110882458 chr1:110882461 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_51178 0 0 1 0 0 Nucleus 0.500231643921822 0.500231643921087 0.176856 1.46971323999878e-12 hm5C_site_46530 DeepMRMD:0.176856;iRNA_m5C:1.46971323999878e-12 46531 chr17 20000058 20000058 1 + A C SKCM 20000054 + 20000034 20000074 41 CCTCTGCCTGCAGCCTCTTCCGGCATGAAGAGTTCTAAGTC CCTCTGCCTGCAGCCTCTTCCGGCCTGAAGAGTTCTAAGTC < 41bp 0.87607477677827 0.546647326496786 0.9227021 0.9118279 prediction 0.658854900562968 Functional Loss - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20000054 chr17:20000058 nonsynonymous SNV 0.980 2 25 hm5C_associated_SNPs_51179 0 0 0 0 0 Cytosol 0.500231643983 0.500231643921062 0.0217483999999999 1.23875132373996e-10 hm5C_site_46531 DeepMRMD:0.0217483999999999;iRNA_m5C:1.23875132373996e-10 46532 chr11 69062897 69062897 1 + G T BLCA 69062894 + 69062874 69062914 41 GCACTCGCTGTTGCCTCTGCCTGGAACAGTCTCCCTCCTGG GCACTCGCTGTTGCCTCTGCCTGTAACAGTCTCCCTCCTGG < 41bp 0.829422668435967 0.477081328566455 0.5608713 0.11839059 prediction 0.658845336871935 Functional Loss - MYEOV ENSG00000172927 CDS Human protein_coding chr11:69062894 chr11:69062897 stopgain 0.018 0 24 hm5C_associated_SNPs_51180 0 0 0 0 2 Ribosome 0.500231643963847 0.500231645698946 0.1217426 0 hm5C_site_46532 DeepMRMD:0.1217426;iRNA_m5C:0 46533 chr11 57428408 57428408 1 + G T UCEC 57428405 + 57428385 57428425 41 ATGTCGTTGTTGTTCTGGATCAAGAACGACTGTACAATGAA ATGTCGTTGTTGTTCTGGATCAATAACGACTGTACAATGAA < 41bp 0.829417081584255 0.4787451717226 0.40418354 0.110069424 prediction 0.65883416316851 Functional Loss - CLP1 ENSG00000172409 CDS Human protein_coding chr11:57428405 chr11:57428408 stopgain 1.000 1 24 hm5C_associated_SNPs_51181 0 0 0 0 0 Cytosol 0.500231643977083 0.500231643921093 0 1.11980646977372e-10 hm5C_site_46533 DeepMRMD:0;iRNA_m5C:1.11980646977372e-10 46534 chr9 90500350 90500350 1 + G T LUAD 90500347 + 90500327 90500367 41 TGGAGGGAGGCTGCCACCACCTGGGGCCTCTCCACCTACTC TGGAGGGAGGCTGCCACCACCTGTGGCCTCTCCACCTACTC < 41bp 0.87364639083287 0.544235157653802 0.9192876 0.16641039 prediction 0.658822466358135 Functional Loss - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90500347 chr9:90500350 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_51182 0 0 0 0 0 exosome 0.500231644513492 0.500231041040729 0.8385752 1.2069455270769e-06 hm5C_site_46534 DeepMRMD:0.8385752;iRNA_m5C:1.2069455270769e-06 46535 chr11 120201149 120201149 1 + G T UCEC 120201146 + 120201126 120201166 41 TTTGCATGGAGGAAGAGCATCAAGAAGTACCATGCTTGGAG TTTGCATGGAGGAAGAGCATCAATAAGTACCATGCTTGGAG < 41bp 0.843431468468389 0.514037188315816 0.31348264 0.25217307 prediction 0.658788560305146 Functional Loss - TMEM136 ENSG00000181264 CDS Human protein_coding chr11:120201146 chr11:120201149 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51183 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_46535 DeepMRMD:0;iRNA_m5C:0 46536 chr17 80332573 80332573 1 + G T LUAD 80332570 + 80332550 80332590 41 ACTTCGGGGACGTGGGCTGCCGCGTGCTCTTCGGCCTGGAC ACTTCGGGGACGTGGGCTGCCGCTTGCTCTTCGGCCTGGAC < 41bp 0.8451434510542 0.515751395340751 0.87678134 0.7783193 prediction 0.658784111426898 Functional Loss - UTS2R ENSG00000181408 CDS Human protein_coding chr17:80332570 chr17:80332573 nonsynonymous SNV 0.444 0 24 hm5C_associated_SNPs_51184 0 0 0 0 0 exosome 0.500230536202438 0.500231643998258 0.19692408 0 hm5C_site_46536 DeepMRMD:0.19692408;iRNA_m5C:0 46537 chr2 74041303 74041303 1 + G T LUAD 74041300 + 74041280 74041320 41 CCTACCACCAGTCTCTACTTCTGGGATGTATTACTCTGTGT CCTACCACCAGTCTCTACTTCTGTGATGTATTACTCTGTGT < 41bp 0.829388077637317 0.465779960048275 0.668687 0.27872312 prediction 0.658776155274633 Functional Loss - C2orf78 ENSG00000187833 CDS Human protein_coding chr2:74041300 chr2:74041303 nonsynonymous SNV 0.025 2 24 hm5C_associated_SNPs_51185 0 0 0 0 1 unknown 0.500231647492483 0.500231643470132 0.337374 8.04470046134043e-09 hm5C_site_46537 DeepMRMD:0.337374;iRNA_m5C:8.04470046134043e-09 46538 chr19 49259514 49259514 1 + G T LUAD 49259511 + 49259491 49259531 41 TTGATGGACTCGGACGAGACCGGGTTCGAGCACTCAGGACT TTGATGGACTCGGACGAGACCGGTTTCGAGCACTCAGGACT < 41bp 0.82937931774438 0.466171024602602 0.8338591 0.42678553 prediction 0.658758635488759 Functional Loss - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49259511 chr19:49259514 synonymous SNV . 0 24 hm5C_associated_SNPs_51186 0 0 0 0 0 unknown 0.500327208273218 0.50023163929208 0.6677182 0.000191137962275656 hm5C_site_46538 DeepMRMD:0.6677182;iRNA_m5C:0.000191137962275656 46539 chr12 54925582 54925582 1 + G T LUAD 54925579 + 54925559 54925599 41 ATTGGGGTTATCCTCAGTTTCAGGGCCATGGCCCAAGAGGG ATTGGGGTTATCCTCAGTTTCAGTGCCATGGCCCAAGAGGG < 41bp 0.829375351603362 0.455955569237669 0.92176497 0.2137138 prediction 0.658750703206724 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54925579 chr12:54925582 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_51187 0 0 1 0 2 Cytosol 0.500231643921103 0.500231643921211 0.84352994 0 hm5C_site_46539 DeepMRMD:0.84352994;iRNA_m5C:0 46540 chr8 110100014 110100014 1 + G T HNSC 110100011 + 110099991 110100031 41 ACAGACAGTATCTACGGTTCCTGGGTCTATGGCTATGTTGG ACAGACAGTATCTACGGTTCCTGTGTCTATGGCTATGTTGG < 41bp 0.829374943236327 0.472135357491731 0.21052307 0.0680289 prediction 0.658749886472655 Functional Loss - TRHR ENSG00000174417 CDS Human protein_coding chr8:110100011 chr8:110100014 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51188 0 0 0 0 0 exosome 0.500231652753036 0.500231643921082 0 1.76639076698848e-08 hm5C_site_46540 DeepMRMD:0;iRNA_m5C:1.76639076698848e-08 46541 chr3 28454759 28454759 1 + G T UCEC 28454756 + 28454736 28454776 41 CTGCTTCATGAACACTGATTCAAGATATAATAACTGCTCAA CTGCTTCATGAACACTGATTCAATATATAATAACTGCTCAA < 41bp 0.829348342411047 0.494510832721558 0.3449093 0.12511432 prediction 0.658696684822095 Functional Loss - ZCWPW2 ENSG00000206559 CDS Human protein_coding chr3:28454756 chr3:28454759 nonsynonymous SNV 0.921 0 24 hm5C_associated_SNPs_51189 0 0 0 0 0 nucleus 0.500231643890732 0.500231643797305 0 1.86855420025722e-10 hm5C_site_46541 DeepMRMD:0;iRNA_m5C:1.86855420025722e-10 46542 chr1 146757092 146757092 1 + A C rs13374920 146757088 + 146757068 146757108 41 AGGACAGACAGAAGAAAAGACAAGAAGCAGCTGCCAAGAGA AGGACAGACAGAAGAAAAGACAAGCAGCAGCTGCCAAGAGA < 41bp 0.829338526074728 0.457142992609849 0.44332916 0.24504843 prediction 0.658677052149456 Functional Loss - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146757088 chr1:146757092 nonsynonymous SNV 0.500 0 25 hm5C_associated_SNPs_51190 0 0 1 0 1 Ribosome 0.500231641853872 0.500231640301619 0 3.1045064297075e-09 hm5C_site_46542 DeepMRMD:0;iRNA_m5C:3.1045064297075e-09 46543 chr1 248059807 248059807 1 + G T LUAD 248059804 + 248059784 248059824 41 GGGCACTGGGAAGGTTGCTTCTGGGGAAGAGAGAGCTAGGA GGGCACTGGGAAGGTTGCTTCTGTGGAAGAGAGAGCTAGGA < 41bp 0.847023922692938 0.517686262626617 0.30772692 0.16726413 prediction 0.658675320132643 Functional Loss - OR2W3 ENSG00000238243 CDS Human protein_coding chr1:248059804 chr1:248059807 nonsynonymous SNV 0.010 0 24 hm5C_associated_SNPs_51191 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46543 DeepMRMD:0;iRNA_m5C:0 46544 chr10 28971216 28971216 1 + G T COAD 28971213 + 28971193 28971233 41 ATGGTGCCGGTCAGTGGGCACGAGAACTGCTGTCTGACCTG ATGGTGCCGGTCAGTGGGCACGATAACTGCTGTCTGACCTG < 41bp 0.858201506637069 0.528886181736885 0.7988736 0.16349033 prediction 0.658630649800369 Functional Loss - BAMBI ENSG00000095739 CDS Human protein_coding chr10:28971213 chr10:28971216 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51192 0 0 1 0 0 Ribosome 0.500231634550537 0.500231657848132 0.5977472 0 hm5C_site_46544 DeepMRMD:0.5977472;iRNA_m5C:0 46545 chr7 144062339 144062339 1 + G T UCEC 144062336 + 144062316 144062356 41 CCCCCATTGCCCCCAAAGTCCAGGGGGAGGAGCAGGAGCAC CCCCCATTGCCCCCAAAGTCCAGTGGGAGGAGCAGGAGCAC < 41bp 0.829292245812079 0.475521220093545 0.85664153 0.4738607 prediction 0.658584491624158 Functional Loss - ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144062336 chr7:144062339 nonsynonymous SNV 0.349 1 24 hm5C_associated_SNPs_51193 0 0 1 0 0 exosome 0.500231643921092 0.500231643921093 0.71328306 0 hm5C_site_46545 DeepMRMD:0.71328306;iRNA_m5C:0 46546 chr14 22133629 22133629 1 + G T UCEC 22133626 + 22133606 22133646 41 CTACATCTCTTTGCCTGTGCCGAGATCTTTCTGCTGATCAT CTACATCTCTTTGCCTGTGCCGATATCTTTCTGCTGATCAT < 41bp 0.858294624783906 0.529006142495453 0.86449206 0.10709101 prediction 0.658576964576907 Functional Loss - OR4E2 ENSG00000221977 CDS Human protein_coding chr14:22133626 chr14:22133629 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51194 0 0 0 0 0 unknown 0.500231652862498 0.500230808436605 0.72898412 1.68885178619682e-06 hm5C_site_46546 DeepMRMD:0.72898412;iRNA_m5C:1.68885178619682e-06 46547 chr19 9270988 9270988 1 + G T UCEC 9270985 + 9270965 9271005 41 TGTACGACGGGAGAAAAATGCATGAATGTCATCAGTGCCAA TGTACGACGGGAGAAAAATGCATTAATGTCATCAGTGCCAA < 41bp 0.829278699804525 0.48708743791159 0.3994166 0.24204707 prediction 0.65855739960905 Functional Loss - ZNF317 ENSG00000130803 CDS Human protein_coding chr19:9270985 chr19:9270988 stopgain 0.970 0 24 hm5C_associated_SNPs_51195 0 0 1 0 0 Nucleus 0.500231643921081 0.500232576182558 0 0 hm5C_site_46547 DeepMRMD:0;iRNA_m5C:0 46548 chr3 121305118 121305118 1 + G T UCEC 121305115 + 121305095 121305135 41 CTACCAGTGACTTCCAAATGCAAGATACTCAGTGGGAGAGG CTACCAGTGACTTCCAAATGCAATATACTCAGTGGGAGAGG < 41bp 0.829270779910736 0.47308879075181 0.79431707 0.19844258 prediction 0.658541559821472 Functional Loss - ARGFX ENSG00000186103 CDS Human protein_coding chr3:121305115 chr3:121305118 nonsynonymous SNV 0.009 3 24 hm5C_associated_SNPs_51196 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921245 0.58863414 0 hm5C_site_46548 DeepMRMD:0.58863414;iRNA_m5C:0 46549 chr19 41765620 41765620 1 + A C OV 41765616 + 41765596 41765636 41 GGATGAGGGTGGAGGTTATCCTGAACCCCCTGGAGCTGCAG GGATGAGGGTGGAGGTTATCCTGACCCCCCTGGAGCTGCAG < 41bp 0.829267720936885 0.454215597501319 0.30407315 0.3305102 prediction 0.65853544187377 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41765616 chr19:41765620 nonsynonymous SNV 0.334 2 25 hm5C_associated_SNPs_51197 0 0 1 0 0 Nucleus 0.500231643921093 0.500231643921092 0 6.66133814775094e-16 hm5C_site_46549 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 46550 chr19 42813749 42813749 1 + G T HNSC 42813746 + 42813726 42813766 41 TCCAGGACACCATGGATACCCAGGGACCAGTCTCCCAGCCT TCCAGGACACCATGGATACCCAGTGACCAGTCTCCCAGCCT < 41bp 0.871546626400884 0.542300658564907 0.92277795 0.05659446 prediction 0.658491935671954 Functional Loss - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42813746 chr19:42813749 stopgain 0.289 0 24 hm5C_associated_SNPs_51198 0 0 0 0 1 exosome 0.500208979232409 0.500231643920706 0.8455559 0 hm5C_site_46550 DeepMRMD:0.8455559;iRNA_m5C:0 46551 chr16 57850442 57850442 1 + G T UCEC 57850439 + 57850419 57850459 41 GTCTGCGCCTTACAAAACCACACGGGCTGCGAGTGACAGCT GTCTGCGCCTTACAAAACCACACTGGCTGCGAGTGACAGCT < 41bp 0.853714349957552 0.524482079245251 0.1828193 0.11746633 prediction 0.658464541424602 Functional Loss - LOC388282 ENSG00000187185 CDS Human lincRNA chr16:57850439 chr16:57850442 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_51199 0 0 0 0 0 unknown 0.500231336093283 0.501445623102442 0 0 hm5C_site_46551 DeepMRMD:0;iRNA_m5C:0 46552 chr19 10221814 10221814 1 + G T LUAD 10221811 + 10221791 10221831 41 GATGGTGGGCGAGGCCGGGGCCGGGGCCGCCCAGGGAAGAG GATGGTGGGCGAGGCCGGGGCCGTGGCCGCCCAGGGAAGAG < 41bp 0.829179218755862 0.471074789029722 0.90143555 0.72365457 prediction 0.658358437511725 Functional Loss - PPAN ENSG00000130810 CDS Human protein_coding chr19:10221811 chr19:10221814 synonymous SNV . 0 24 hm5C_associated_SNPs_51200 0 0 1 0 0 chromatin 0.500231639324125 0.500231631268783 0.35556196 1.61106841201075e-08 hm5C_site_46552 DeepMRMD:0.35556196;iRNA_m5C:1.61106841201075e-08 46553 chr4 189060949 189060949 1 + G T UCEC 189060946 + 189060926 189060966 41 GGGAGGCTGGCCAGCATCGCCAGGCAGCTCCGGTCCCAGGT GGGAGGCTGGCCAGCATCGCCAGTCAGCTCCGGTCCCAGGT < 41bp 0.829169639042318 0.458543487263858 0.9218472 0.7810712 prediction 0.658339278084636 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189060946 chr4:189060949 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_51201 0 0 0 0 0 nucleus 0.500231647979664 0.500231643920811 0.281552 8.11770628494912e-09 hm5C_site_46553 DeepMRMD:0.281552;iRNA_m5C:8.11770628494912e-09 46554 chr1 215777496 215777496 1 + G T UCEC 215777493 + 215777473 215777513 41 GGTGTCAGTGGTAACTGGATCGAGATCGCCTATGGTACGAG GGTGTCAGTGGTAACTGGATCGATATCGCCTATGGTACGAG < 41bp 0.829163486766588 0.47464832356766 0.5308238 0.061992496 prediction 0.658326973533176 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215777493 chr1:215777496 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51202 0 0 1 0 1 Ribosome 0.500231657379458 0.500231643921092 0.0616475999999999 2.69167301780726e-08 hm5C_site_46554 DeepMRMD:0.0616475999999999;iRNA_m5C:2.69167301780726e-08 46555 chr6 26020768 26020768 1 + A C rs145452674 26020764 + 26020744 26020784 41 GAAGTCTACTGGTGGCAAGGCGCCACGCAAACAGTTGGCCA GAAGTCTACTGGTGGCAAGGCGCCCCGCAAACAGTTGGCCA < 41bp 0.858182656785059 0.529033543643952 0.15862176 0.123363584 prediction 0.658298226282214 Functional Loss - HIST1H3A ENSG00000198366 CDS Human other chr6:26020764 chr6:26020768 synonymous SNV . 0 25 hm5C_associated_SNPs_51203 0 0 1 0 0 exosome 0.500230467665375 0.500231643914626 0 0 hm5C_site_46555 DeepMRMD:0;iRNA_m5C:0 46556 chr1 33237908 33237908 1 + G T BLCA 33237905 + 33237885 33237925 41 ACCCGCCTCCCCCAGTTACCCTCGAGCTGAGCCCCTTACTG ACCCGCCTCCCCCAGTTACCCTCTAGCTGAGCCCCTTACTG < 41bp 0.842048608801843 0.51291348698446 0.46456853 0.3487857 prediction 0.658270243634765 Functional Loss - KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33237905 chr1:33237908 nonsynonymous SNV 0.273 1 24 hm5C_associated_SNPs_51204 0 0 1 0 0 Ribosome 0.500231643921561 0.500231643921093 0 9.37028232783632e-13 hm5C_site_46556 DeepMRMD:0;iRNA_m5C:9.37028232783632e-13 46557 chrX 48434708 48434708 1 + G T LUSC 48434705 + 48434685 48434725 41 GTGTCTCCCACACTTAGTCTCTGGATGGTCGTCAGATCCGT GTGTCTCCCACACTTAGTCTCTGTATGGTCGTCAGATCCGT < 41bp 0.861132738869139 0.532011122813858 0.34900206 0.18291476 prediction 0.658243232110562 Functional Loss - RBM3 ENSG00000102317 CDS Human protein_coding chrX:48434705 chrX:48434708 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_51205 0 0 1 0 2 Ribosome 0.500231765838446 0.500231640174302 0 2.51328286404728e-07 hm5C_site_46557 DeepMRMD:0;iRNA_m5C:2.51328286404728e-07 46558 chr5 156668668 156668668 1 + G T LUSC 156668665 + 156668645 156668685 41 AATCAACCCAGGCCTGGTGACTCGACTCCGGTATCCAGTTT AATCAACCCAGGCCTGGTGACTCTACTCCGGTATCCAGTTT < 41bp 0.848375319090737 0.519279374917099 0.12651128 0.44235772 prediction 0.658191888347277 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156668665 chr5:156668668 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51206 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46558 DeepMRMD:0;iRNA_m5C:0 46559 chr12 121003261 121003261 1 + A C LUSC 121003257 + 121003237 121003277 41 TTGAGAAGAGGAAACGTCAGCGCCAAAAGAAGGCTCGGGAG TTGAGAAGAGGAAACGTCAGCGCCCAAAGAAGGCTCGGGAG < 41bp 0.829088661934717 0.430576249268009 0.19192171 0.0921886 prediction 0.658177323869433 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121003257 chr12:121003261 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_51207 0 0 1 0 1 Ribosome 0.50023164392112 0.500231643921092 0 5.44009282066327e-14 hm5C_site_46559 DeepMRMD:0;iRNA_m5C:5.44009282066327e-14 46560 chr20 3725572 3725572 1 + G T SARC 3725569 + 3725549 3725589 41 GAAATGGGAGGGCGGAGACCCGGGCGTGGCCCACCAGAAGA GAAATGGGAGGGCGGAGACCCGGTCGTGGCCCACCAGAAGA < 41bp 0.829074861844504 0.46630757288949 0.90593505 0.6441399 prediction 0.658149723689007 Functional Loss - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3725569 chr20:3725572 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_51208 0 0 0 0 1 exosome 0.500231644607579 0.500231643918925 0.5235903 1.37730959970384e-09 hm5C_site_46560 DeepMRMD:0.5235903;iRNA_m5C:1.37730959970384e-09 46561 chr20 32336861 32336861 1 + G T LUSC 32336858 + 32336838 32336878 41 CCCTGGACCAGCCCATGCCCCAGGGCCCCCCACCTGTGCAG CCCTGGACCAGCCCATGCCCCAGTGCCCCCCACCTGTGCAG < 41bp 0.829074490132655 0.449392724939814 0.86544704 0.10280812 prediction 0.65814898026531 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32336858 chr20:32336861 nonsynonymous SNV 0.762 2 24 hm5C_associated_SNPs_51209 0 0 1 0 1 chromatin 0.500231643920701 0.500231628630564 0.73089408 3.05802738687078e-08 hm5C_site_46561 DeepMRMD:0.73089408;iRNA_m5C:3.05802738687078e-08 46562 chr9 38397105 38397105 1 + G T UCEC 38397102 + 38397082 38397122 41 CGGCTGTGTTCACCCGGGATCTGGACAAGGCCATGTACTTC CGGCTGTGTTCACCCGGGATCTGTACAAGGCCATGTACTTC < 41bp 0.853726388600621 0.524653109807558 0.3385222 0.19184554 prediction 0.658146557586127 Functional Loss - ALDH1B1 ENSG00000137124 CDS Human protein_coding chr9:38397102 chr9:38397105 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51210 0 0 1 0 0 Cytosol 0.500231643921093 0.500231600761278 0 8.63196303324543e-08 hm5C_site_46562 DeepMRMD:0;iRNA_m5C:8.63196303324543e-08 46563 chr11 55339996 55339996 1 + G T LUAD 55339993 + 55339973 55340013 41 ATCTGTAAGCCCCTGCACTACATGACCATCATAAGCCAGTG ATCTGTAAGCCCCTGCACTACATTACCATCATAAGCCAGTG < 41bp 0.849981104262836 0.520909074254051 0.08367583 0.014249325 prediction 0.65814406001757 Functional Loss - OR4C16 ENSG00000181935 CDS Human other chr11:55339993 chr11:55339996 nonsynonymous SNV 0.019 0 24 hm5C_associated_SNPs_51211 0 0 0 0 0 unknown 0.500231644327882 0.500231643921092 0 8.13578315828067e-10 hm5C_site_46563 DeepMRMD:0;iRNA_m5C:8.13578315828067e-10 46564 chr15 44069053 44069053 1 + A C COAD 44069049 + 44069029 44069069 41 AGGCTAGTCCGGGCAGCTTGCGTGAAGCAGAGCCGGAGCTG AGGCTAGTCCGGGCAGCTTGCGTGCAGCAGAGCCGGAGCTG < 41bp 0.838277876516287 0.509215569976005 0.8538358 0.60188043 prediction 0.658124613080564 Functional Loss - ELL3 ENSG00000128886 CDS Human protein_coding chr15:44069049 chr15:44069053 nonsynonymous SNV 0.024 2 25 hm5C_associated_SNPs_51212 0 0 0 0 0 Endoplasmic reticulum 0.500231643919189 0.500231614606456 0.50391074 5.86254644829864e-08 hm5C_site_46564 DeepMRMD:0.50391074;iRNA_m5C:5.86254644829864e-08 46565 chr9 15458012 15458012 1 + G T UCEC 15458009 + 15457989 15458029 41 ACATTGTATCCCCTCCTTATCAAGAAGCATTGGCTATGGAC ACATTGTATCCCCTCCTTATCAATAAGCATTGGCTATGGAC < 41bp 0.829040211352965 0.486958432391135 0.91657853 0.07789469 prediction 0.658080422705929 Functional Loss - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15458009 chr9:15458012 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51213 0 0 1 2 2 Ribosome 0.500231643920424 0.500231643921092 0.83315706 0 hm5C_site_46565 DeepMRMD:0.83315706;iRNA_m5C:0 46566 chr6 83869559 83869559 1 + G T UCEC 83869556 + 83869536 83869576 41 TGGTCTGGAGACAACGTACACAGGAGGTAATGGCTTCTCTA TGGTCTGGAGACAACGTACACAGTAGGTAATGGCTTCTCTA < 41bp 0.839968352423228 0.510930544144778 0.891704 0.25394446 prediction 0.658075616556899 Functional Loss - DOPEY1 ENSG00000083097 CDS Human protein_coding chr6:83869556 chr6:83869559 nonsynonymous SNV 0.955 3 24 hm5C_associated_SNPs_51214 0 0 1 0 1 Cytosol 0.500231643822139 0.500231643921349 0.783408 0 hm5C_site_46566 DeepMRMD:0.783408;iRNA_m5C:0 46567 chr22 25598671 25598671 1 + G T UCEC 25598668 + 25598648 25598688 41 TGTACGAACTAGAGAACTTCCAAGGCAAACGCTGCGAGCTC TGTACGAACTAGAGAACTTCCAATGCAAACGCTGCGAGCTC < 41bp 0.829012906961995 0.461912397129068 0.8945337 0.43682534 prediction 0.658025813923991 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598668 chr22:25598671 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_51215 0 0 0 0 2 exosome 0.500231643921011 0.500231651273971 0.7890674 0 hm5C_site_46567 DeepMRMD:0.7890674;iRNA_m5C:0 46568 chr3 50095301 50095301 1 + G T UCEC 50095298 + 50095278 50095318 41 CCAGGAAGAGGGAAGAAGGCCAAGAGTCACGCTTAGGACAT CCAGGAAGAGGGAAGAAGGCCAATAGTCACGCTTAGGACAT < 41bp 0.845685211210845 0.51669540091081 0.26295474 0.10535443 prediction 0.657979620600071 Functional Loss - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50095298 chr3:50095301 stopgain 0.830 0 24 hm5C_associated_SNPs_51216 0 0 1 0 0 Nucleus 0.500231643921079 0.500231644541624 0 0 hm5C_site_46568 DeepMRMD:0;iRNA_m5C:0 46569 chrX 75650397 75650397 1 + G T LUSC 75650394 + 75650374 75650414 41 CAGAGAAATACAACGAAGCTCTGGAAGAAGATGCTGCCAGA CAGAGAAATACAACGAAGCTCTGTAAGAAGATGCTGCCAGA < 41bp 0.828989484251005 0.478098851571667 0.4081957 0.09333974 prediction 0.65797896850201 Functional Loss - MAGEE1 ENSG00000198934 CDS Human protein_coding chrX:75650394 chrX:75650397 stopgain 1.000 0 24 hm5C_associated_SNPs_51217 0 0 0 0 0 membrane 0.500231131641447 0.500231643782442 0 0 hm5C_site_46569 DeepMRMD:0;iRNA_m5C:0 46570 chr6 27219637 27219637 1 + G T PAAD 27219634 + 27219614 27219654 41 AGCTGAGCGCTTGCGGGCCCCTGGGCCGCGCTGAAAACCAG AGCTGAGCGCTTGCGGGCCCCTGTGCCGCGCTGAAAACCAG < 41bp 0.860278098018128 0.53131023632994 0.8925743 0.40672693 prediction 0.657935723376377 Functional Loss - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27219634 chr6:27219637 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_51218 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921089 0.7851486 7.105427357601e-15 hm5C_site_46570 DeepMRMD:0.7851486;iRNA_m5C:7.105427357601e-15 46571 chr10 90428460 90428460 1 + G T UCEC 90428457 + 90428437 90428477 41 GGCAACAGCAGAGGAAACACCTGGGCCAGAAGAAACTTGTA GGCAACAGCAGAGGAAACACCTGTGCCAGAAGAAACTTGTA < 41bp 0.855321726349122 0.526363734381532 0.834216 0.3849911 prediction 0.657915983935179 Functional Loss - LIPF ENSG00000182333 CDS Human protein_coding chr10:90428457 chr10:90428460 nonsynonymous SNV 0.948 3 24 hm5C_associated_SNPs_51219 0 0 0 0 2 exosome 0.500231643921092 0.500231643921066 0.668432 5.24025267623074e-14 hm5C_site_46571 DeepMRMD:0.668432;iRNA_m5C:5.24025267623074e-14 46572 chr22 40364204 40364204 1 + A C SKCM 40364200 + 40364180 40364220 41 CCAGCACCAGCCACAGCCTCCGCAATATGCCCCAGCGCCCC CCAGCACCAGCCACAGCCTCCGCACTATGCCCCAGCGCCCC < 41bp 0.828954768664283 0.450835735543975 0.12804016 0.30923462 prediction 0.657909537328567 Functional Loss - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40364200 chr22:40364204 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_51220 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_46572 DeepMRMD:0;iRNA_m5C:0 46573 chr6 44397592 44397592 1 + G T LUSC 44397589 + 44397569 44397609 41 TCCTGGGCAGAGCCGCTACACACGGGCCAATCTGGCTAGTA TCCTGGGCAGAGCCGCTACACACTGGCCAATCTGGCTAGTA < 41bp 0.828953876011776 0.482425568730675 0.4043798 0.20916855 prediction 0.657907752023552 Functional Loss - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44397589 chr6:44397592 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51221 0 0 1 0 1 Nucleus 0.500231643921092 0.500231645983367 0 0 hm5C_site_46573 DeepMRMD:0;iRNA_m5C:0 46574 chr5 115298372 115298372 1 + G T LUAD 115298369 + 115298349 115298389 41 GCCGCGCAGTGGCCCTGCTGCTGGCTGGGCTGGTAGCCGCC GCCGCGCAGTGGCCCTGCTGCTGTCTGGGCTGGTAGCCGCC < 41bp 0.82895014617538 0.468854923894968 0.1411621 0.038546562 prediction 0.65790029235076 Functional Loss - LVRN ENSG00000172901 CDS Human protein_coding chr5:115298369 chr5:115298372 nonsynonymous SNV 0.850 1 24 hm5C_associated_SNPs_51222 0 0 0 0 0 Cytosol 0.500231644225589 0.500231643921041 0 6.09096106884977e-10 hm5C_site_46574 DeepMRMD:0;iRNA_m5C:6.09096106884977e-10 46575 chr22 44332974 44332974 1 + A C rs78730442 44332970 + 44332950 44332990 41 GCCAGGCCTGAAGTCATCCTCAGAAGGGATGGATCCTGAGG GCCAGGCCTGAAGTCATCCTCAGACGGGATGGATCCTGAGG < 41bp 0.867923541115237 0.53898841469543 0.9071667 0.86238515 prediction 0.657870252839613 Functional Loss - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44332970 chr22:44332974 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_51223 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921442 0.0895630999999999 0 hm5C_site_46575 DeepMRMD:0.0895630999999999;iRNA_m5C:0 46576 chr16 68941453 68941453 1 + G T LUAD 68941450 + 68941430 68941470 41 CTGCCAGGAATGCGGTTTGGCAGGAGACTTCTTCATCTTCT CTGCCAGGAATGCGGTTTGGCAGTAGACTTCTTCATCTTCT < 41bp 0.828922779989372 0.47568908706046 0.4997195 0.033783913 prediction 0.657845559978744 Functional Loss - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68941450 chr16:68941453 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51224 0 0 1 0 1 Nucleus 0.500231643921092 0.50023164392114 0 0 hm5C_site_46576 DeepMRMD:0;iRNA_m5C:0 46577 chr11 55587196 55587196 1 + G T LUSC 55587193 + 55587173 55587213 41 AACTGCAAGTCCCACTCTTCCTGGTTTTTCTGGCCATCTAC AACTGCAAGTCCCACTCTTCCTGTTTTTTCTGGCCATCTAC < 41bp 0.847895198578622 0.519001189380207 0.07560533 0.0425224 prediction 0.657788018396829 Functional Loss - OR5D18 ENSG00000186119 CDS Human protein_coding chr11:55587193 chr11:55587196 nonsynonymous SNV 0.028 1 24 hm5C_associated_SNPs_51225 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_46577 DeepMRMD:0;iRNA_m5C:0 46578 chrX 37663315 37663315 1 + G T LUAD 37663312 + 37663292 37663332 41 CATATCCGCATCGTTGGGGACTGGACAGAGGGGCTGTTCAA CATATCCGCATCGTTGGGGACTGTACAGAGGGGCTGTTCAA < 41bp 0.828893727437411 0.480693175051228 0.28627768 0.17651576 prediction 0.657787454874823 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37663312 chrX:37663315 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_51226 0 0 0 0 0 Endoplasmic reticulum 0.500231641918795 0.50023164390983 0 0 hm5C_site_46578 DeepMRMD:0;iRNA_m5C:0 46579 chr1 43770798 43770798 1 + G T HNSC 43770795 + 43770775 43770815 41 CTGCGTGGGCGGTGCTGGGGCGCGGCGCACGCGCGTCATCT CTGCGTGGGCGGTGCTGGGGCGCTGCGCACGCGCGTCATCT < 41bp 0.828886211884021 0.475069405743034 0.8328643 0.30070585 prediction 0.657772423768042 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43770795 chr1:43770798 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_51227 0 0 0 0 1 Cytosol 0.500231643921092 0.500231644016579 0.6657286 0 hm5C_site_46579 DeepMRMD:0.6657286;iRNA_m5C:0 46580 chr17 1650347 1650347 1 + G T STAD 1650345 + 1650325 1650365 41 ACACGTTGCAGAGGCTGCAACAGGTGCTGCACGCAGGCTCA ACACGTTGCAGAGGCTGCAACATGTGCTGCACGCAGGCTCA < 41bp 0.828861704878044 0.494381432549946 0.8921963 0.699399 prediction 0.657723409756088 Functional Loss - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1650345 chr17:1650347 nonsynonymous SNV 0.033 0 23 hm5C_associated_SNPs_51228 0 0 0 0 1 Endoplasmic reticulum 0.500232046871683 0.500231680568191 0.3855946 7.32606983300244e-07 hm5C_site_46580 DeepMRMD:0.3855946;iRNA_m5C:7.32606983300244e-07 46581 chrX 37027635 37027635 1 + G T UCEC 37027632 + 37027612 37027652 41 CATCTCTGCCCGGAACCTCCCAAGACTCGCGTACCTCCTCT CATCTCTGCCCGGAACCTCCCAATACTCGCGTACCTCCTCT < 41bp 0.862312391933863 0.533451859925176 0.40601265 0.14017358 prediction 0.657721064017372 Functional Loss - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37027632 chrX:37027635 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_51229 0 0 0 0 0 unknown 0.500231643936274 0.500231643921092 0 3.03632674558685e-11 hm5C_site_46581 DeepMRMD:0;iRNA_m5C:3.03632674558685e-11 46582 chr1 226016494 226016494 1 + G T COAD 226016491 + 226016471 226016511 41 CCATCTACTGGTTCATCTCCCGGGACAAAGAGGAAACTTTG CCATCTACTGGTTCATCTCCCGGTACAAAGAGGAAACTTTG < 41bp 0.86112643368777 0.532272283956537 0.8991422 0.71715826 prediction 0.657708299462467 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226016491 chr1:226016494 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_51230 0 0 1 0 1 Endoplasmic reticulum 0.500231643810343 0.500231643818409 0.36396788 0 hm5C_site_46582 DeepMRMD:0.36396788;iRNA_m5C:0 46583 chr9 129642663 129642663 1 + G T rs141877075 129642660 + 129642640 129642680 41 GAGGGCGTGCCCGCCAGAAGCGGGCTTTGTCTGTCCACCTG GAGGGCGTGCCCGCCAGAAGCGGTCTTTGTCTGTCCACCTG < 41bp 0.866835405953101 0.537982462989319 0.9107835 0.5073982 prediction 0.657705885927564 Functional Loss - ZBTB34 ENSG00000177125 CDS Human protein_coding chr9:129642660 chr9:129642663 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_51231 0 0 1 0 0 nucleoplasm 0.50023162843366 0.500231637543082 0.8067706 0 hm5C_site_46583 DeepMRMD:0.8067706;iRNA_m5C:0 46584 chr19 56370443 56370443 1 + G T SARC 56370440 + 56370420 56370460 41 TTTACTGTCTCTTTGAAATGCAGGATCCTGCCTTTGTGAAG TTTACTGTCTCTTTGAAATGCAGTATCCTGCCTTTGTGAAG < 41bp 0.828851365921226 0.468498993367893 0.6921159 0.14980605 prediction 0.657702731842453 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56370440 chr19:56370443 nonsynonymous SNV 0.011 4 24 hm5C_associated_SNPs_51232 0 0 0 0 0 exosome 0.500223971929514 0.500230001035097 0.3842318 0 hm5C_site_46584 DeepMRMD:0.3842318;iRNA_m5C:0 46585 chrX 149905241 149905241 1 + G T UCEC 149905238 + 149905218 149905258 41 ATGTGGATGGGACGCATTGGCTGGAATATATAAGGGTAAAG ATGTGGATGGGACGCATTGGCTGTAATATATAAGGGTAAAG < 41bp 0.844132335204822 0.51530337715246 0.2718558 0.06448099 prediction 0.657657916104724 Functional Loss - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905238 chrX:149905241 stopgain 0.997 1 24 hm5C_associated_SNPs_51233 0 0 1 8 0 Ribosome 0.500231643895053 0.500231643921092 0 0 hm5C_site_46585 DeepMRMD:0;iRNA_m5C:0 46586 chr17 7466910 7466910 1 + G T SARC 7466907 + 7466887 7466927 41 AGAACCATCTTTCACCCCAGCAAGGGGGTGCGACGCCACAG AGAACCATCTTTCACCCCAGCAATGGGGTGCGACGCCACAG < 41bp 0.828796093244722 0.480102883763893 0.6757158 0.14704108 prediction 0.657592186489444 Functional Loss - SENP3 ENSG00000161956 CDS Human protein_coding chr17:7466907 chr17:7466910 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_51234 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0.3514316 0 hm5C_site_46586 DeepMRMD:0.3514316;iRNA_m5C:0 46587 chr20 19955925 19955925 1 + G T BLCA 19955922 + 19955902 19955942 41 CCCGCCGCCCAGCTCTGAATCACGGCCCCCGTGCCATGGAG CCCGCCGCCCAGCTCTGAATCACTGCCCCCGTGCCATGGAG < 41bp 0.868545368286152 0.539761227149706 0.59400576 0.18794483 prediction 0.657568282272892 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19955922 chr20:19955925 nonsynonymous SNV 0.988 0 24 hm5C_associated_SNPs_51235 0 0 0 0 0 Nucleus 0.5002316439211 0.500231643921092 0.18801152 1.57651669496772e-14 hm5C_site_46587 DeepMRMD:0.18801152;iRNA_m5C:1.57651669496772e-14 Feeling tense 46588 chr6 25983666 25983666 1 + G T UCEC 25983663 + 25983643 25983683 41 CAAGAGCCTCAGTCTGGATTCTGGACCCTCAGGCTGTGCAA CAAGAGCCTCAGTCTGGATTCTGTACCCTCAGGCTGTGCAA < 41bp 0.828769007376035 0.482995716586754 0.48232794 0.23340443 prediction 0.65753801475207 Functional Loss - TRIM38 ENSG00000112343 CDS Human protein_coding chr6:25983663 chr6:25983666 nonsynonymous SNV 0.381 4 24 hm5C_associated_SNPs_51236 0 0 1 0 0 Cytosol 0.500231643900759 0.500231643921092 0 0 hm5C_site_46588 DeepMRMD:0;iRNA_m5C:0 46589 chrX 75396788 75396788 1 + G T LUAD 75396785 + 75396765 75396805 41 ACTATGGTACTTTGCTGCGACTAGATTGTTCTCAGGGCTAC ACTATGGTACTTTGCTGCGACTATATTGTTCTCAGGGCTAC < 41bp 0.828767739045905 0.492687872904058 0.046841472 0.05348462 prediction 0.65753547809181 Functional Loss - PBDC1 ENSG00000102390 CDS Human protein_coding chrX:75396785 chrX:75396788 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51237 0 0 1 0 2 nucleoplasm 0.500231643929938 0.500231594781755 0 9.82963652695901e-08 hm5C_site_46589 DeepMRMD:0;iRNA_m5C:9.82963652695901e-08 46590 chr17 40937377 40937377 1 + G T HNSC 40937375 + 40937355 40937395 41 AGGAGGACGACGGCGAGAAGCCGGGCCTCAAGCTCTGGCTG AGGAGGACGACGGCGAGAAGCCTGGCCTCAAGCTCTGGCTG < 41bp 0.828757169896995 0.488826521638487 0.9045868 0.5694679 prediction 0.65751433979399 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40937375 chr17:40937377 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_51238 0 0 1 0 0 chromatin 0.500231643978753 0.50023164392109 0.6702378 1.15325970995173e-10 hm5C_site_46590 DeepMRMD:0.6702378;iRNA_m5C:1.15325970995173e-10 46591 chr16 32070568 32070568 1 + G T LUAD 32070565 + 32070545 32070585 41 CCTGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGC CCTGGTGCAGCTGGTGCAGTCTGTGGCTGAGGTGAAGAAGC < 41bp 0.844063158196831 0.515306337531734 0.8791368 0.51139176 prediction 0.657513641330194 Functional Loss - ZNF267;LOC102723753 ENSG00000260048 ncRNA_exonic Human IG_V_pseudogene chr16:32070565 chr16:32070568 . . 0 24 hm5C_associated_SNPs_51239 0 0 0 0 0 unknown 0.500231642547736 0.500231645198533 0.73549008 0 hm5C_site_46591 DeepMRMD:0.73549008;iRNA_m5C:0 46592 chr3 14756916 14756916 1 + G T PRAD 14756913 + 14756893 14756933 41 ACCCTGCTTTCCCTGGAATACAAGGTAGGGATGGGCAGCAC ACCCTGCTTTCCCTGGAATACAATGTAGGGATGGGCAGCAC < 41bp 0.859814140314758 0.531061181392544 0.47435185 0.237813 prediction 0.657505917844428 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14756913 chr3:14756916 nonsynonymous SNV 0.954 3 24 hm5C_associated_SNPs_51240 0 0 0 0 1 nucleoplasm 0.500231643921092 0.500231643921092 0 0 hm5C_site_46592 DeepMRMD:0;iRNA_m5C:0 46593 chr22 40804304 40804304 1 + G T UCEC 40804301 + 40804281 40804321 41 TACTCCATCGCGGGGGATGACTCGGTGACGGAGGGGGTCAC TACTCCATCGCGGGGGATGACTCTGTGACGGAGGGGGTCAC < 41bp 0.828727446170951 0.480836421085116 0.49847066 0.40203184 prediction 0.657454892341903 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40804301 chr22:40804304 synonymous SNV . 0 24 hm5C_associated_SNPs_51241 0 0 1 0 1 Cytosol 0.500231643922316 0.500231643921218 0 2.19624318731348e-12 hm5C_site_46593 DeepMRMD:0;iRNA_m5C:2.19624318731348e-12 46594 chr8 99161174 99161174 1 + G T OV 99161171 + 99161151 99161191 41 ACTGGTGAAGATCGACTAGGCTGGGGAAGTGGCTGGGATGT ACTGGTGAAGATCGACTAGGCTGTGGAAGTGGCTGGGATGT < 41bp 0.869701283787149 0.540982367290076 0.6155522 0.21824464 prediction 0.657437832994146 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99161171 chr8:99161174 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51242 0 0 0 0 1 Mitochondrion 0.500062344552943 0.500229622671823 0.2311044 0 hm5C_site_46594 DeepMRMD:0.2311044;iRNA_m5C:0 46595 chr9 95784668 95784668 1 + A C PRAD 95784664 + 95784644 95784684 41 CACCGAAGGCAGTTCGGGTGCAGCAGGGGTAAGTGCCCCAT CACCGAAGGCAGTTCGGGTGCAGCCGGGGTAAGTGCCCCAT < 41bp 0.87810163389252 0.549389602427252 0.85176986 0.8262031 prediction 0.657424062930538 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95784664 chr9:95784668 synonymous SNV . 0 25 hm5C_associated_SNPs_51243 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.05113352 0 hm5C_site_46595 DeepMRMD:0.05113352;iRNA_m5C:0 Multiple continuous traits in DGI samples 46596 chr12 55523801 55523801 1 + A C UCEC 55523797 + 55523777 55523817 41 GACTGATCCTCGGCTGAACACACCAATGTATTTTTTCCTAG GACTGATCCTCGGCTGAACACACCCATGTATTTTTTCCTAG < 41bp 0.828699492346503 0.461047249396128 0.26548162 0.047251165 prediction 0.657398984693006 Functional Loss - OR9K2 ENSG00000170605 CDS Human protein_coding chr12:55523797 chr12:55523801 synonymous SNV . 0 25 hm5C_associated_SNPs_51244 0 0 0 0 0 unknown 0.500233060531539 0.500231643921612 0 2.8332198547254e-06 hm5C_site_46596 DeepMRMD:0;iRNA_m5C:2.8332198547254e-06 46597 chr17 17699150 17699150 1 + G T LUAD 17699147 + 17699127 17699167 41 GCCTGATGGGGAGCGAGCTCCAGGGGATTCCACCACCTCGG GCCTGATGGGGAGCGAGCTCCAGTGGATTCCACCACCTCGG < 41bp 0.828691890727281 0.468030777348028 0.93590313 0.77904594 prediction 0.657383781454562 Functional Loss - RAI1 ENSG00000108557 CDS Human protein_coding chr17:17699147 chr17:17699150 nonsynonymous SNV 0.078 1 24 hm5C_associated_SNPs_51245 0 0 1 0 0 chromatin 0.500231643920428 0.500231643673727 0.31371438 4.93401763890233e-10 hm5C_site_46597 DeepMRMD:0.31371438;iRNA_m5C:4.93401763890233e-10 46598 chr2 187455108 187455108 1 + G T LUAD 187455105 + 187455085 187455125 41 GACGGCTGCGCCTCGGTCCCCGCGGCCTCCCGCTTCTTCTC GACGGCTGCGCCTCGGTCCCCGCTGCCTCCCGCTTCTTCTC < 41bp 0.828659455504837 0.490662188055098 0.92944777 0.36606202 prediction 0.657318911009674 Functional Loss - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187455105 chr2:187455108 nonsynonymous SNV 0.106 2 24 hm5C_associated_SNPs_51246 0 0 1 0 0 Endoplasmic reticulum 0.500231643019444 0.500231643872813 0.85889554 0 hm5C_site_46598 DeepMRMD:0.85889554;iRNA_m5C:0 46599 chr11 74914356 74914356 1 + G T UCEC 74914353 + 74914333 74914373 41 TGAGCACCACCTCCCTCAGCCTGGATGCCCAGCCCCGTGAT TGAGCACCACCTCCCTCAGCCTGTATGCCCAGCCCCGTGAT < 41bp 0.828659301584683 0.474704595824016 0.40572304 0.16554835 prediction 0.657318603169365 Functional Loss - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74914353 chr11:74914356 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51247 0 0 1 0 1 cytosol 0.500231643917109 0.500231643921236 0 0 hm5C_site_46599 DeepMRMD:0;iRNA_m5C:0 46600 chrX 102885205 102885205 1 + A C UCEC 102885201 + 102885181 102885221 41 TTTAGAGGGGACATACATGGCAGAAATTTAAGCAATGAGGA TTTAGAGGGGACATACATGGCAGACATTTAAGCAATGAGGA < 41bp 0.828650417004165 0.46435788474675 0.1304686 0.15502667 prediction 0.65730083400833 Functional Loss - TCEAL1 ENSG00000172465 CDS Human protein_coding chrX:102885201 chrX:102885205 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_51248 0 0 1 0 0 Cytosol 0.500231643846028 0.500231653669023 0 0 hm5C_site_46600 DeepMRMD:0;iRNA_m5C:0 46601 chrX 30261039 30261039 1 + A C OV 30261035 + 30261015 30261055 41 CTGGAATACCAGCAGGTGCCCAACAGTGATCCCCCACGCTA CTGGAATACCAGCAGGTGCCCAACCGTGATCCCCCACGCTA < 41bp 0.860857582521913 0.532209921894536 0.20146257 0.0616875 prediction 0.657295321254754 Functional Loss - MAGEB4 ENSG00000120289 CDS Human protein_coding chrX:30261035 chrX:30261039 nonsynonymous SNV 0.263 3 25 hm5C_associated_SNPs_51249 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643923993 0 0 hm5C_site_46601 DeepMRMD:0;iRNA_m5C:0 46602 chr1 174973839 174973839 1 + G T LUAD 174973836 + 174973816 174973856 41 GCCCTTACAGCTGAAAAATCCAAGATTGAGACAGAAATCAA GCCCTTACAGCTGAAAAATCCAATATTGAGACAGAAATCAA < 41bp 0.828646327089149 0.489825576563885 0.17731625 0.10494137 prediction 0.657292654178298 Functional Loss - CACYBP ENSG00000116161 CDS Human protein_coding chr1:174973836 chr1:174973839 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_51250 0 0 1 0 1 Cytosol 0.50023164392108 0.500231721296296 0 0 hm5C_site_46602 DeepMRMD:0;iRNA_m5C:0 46603 chr1 158152837 158152837 1 + G T COAD 158152834 + 158152814 158152854 41 GACATCCTGCCCAATGCTGACGAGACATGGTATCTCCGAGC GACATCCTGCCCAATGCTGACGATACATGGTATCTCCGAGC < 41bp 0.828614921926681 0.469017381774242 0.7324136 0.11228976 prediction 0.657229843853361 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152834 chr1:158152837 nonsynonymous SNV 0.201 0 24 hm5C_associated_SNPs_51251 0 0 0 0 0 Endoplasmic reticulum 0.500231530184386 0.500231643922126 0.4648272 0 hm5C_site_46603 DeepMRMD:0.4648272;iRNA_m5C:0 46604 chr21 41137531 41137531 1 + G T LIHC 41137528 + 41137508 41137548 41 AGTCCTGAAGGGCTCCCAGGCTCGCTTCAACTGCACCGTCT AGTCCTGAAGGGCTCCCAGGCTCTCTTCAACTGCACCGTCT < 41bp 0.828590955972922 0.469023381458861 0.22448114 0.07337016 prediction 0.657181911945844 Functional Loss - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41137528 chr21:41137531 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_51252 0 0 0 0 1 exosome 0.500231643921148 0.500231643921092 0 1.10800257857591e-13 hm5C_site_46604 DeepMRMD:0;iRNA_m5C:1.10800257857591e-13 46605 chr19 10221461 10221461 1 + G T STAD 10221458 + 10221438 10221478 41 TCCCTTCAAGGACGGCGAGCCTGGAGTTGGGTGAGGACGAT TCCCTTCAAGGACGGCGAGCCTGTAGTTGGGTGAGGACGAT < 41bp 0.828590416358828 0.475942073315535 0.44165725 0.08330473 prediction 0.657180832717656 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10221458 chr19:10221461 stopgain 0.000 0 24 hm5C_associated_SNPs_51253 0 0 1 0 1 unknown 0.500231754669305 0.500229660898305 0 4.18754199849047e-06 hm5C_site_46605 DeepMRMD:0;iRNA_m5C:4.18754199849047e-06 46606 chr3 138191325 138191325 1 + G T UCEC 138191322 + 138191302 138191342 41 AGGGTCCCAAAGCCCAACCTCAGGAAGAAGGCCCTACAGAT AGGGTCCCAAAGCCCAACCTCAGTAAGAAGGCCCTACAGAT < 41bp 0.828559524862696 0.452743034618881 0.8678313 0.29938817 prediction 0.657119049725393 Functional Loss - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138191322 chr3:138191325 stopgain 0.002 0 24 hm5C_associated_SNPs_51254 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643921092 0.7356626 0 hm5C_site_46606 DeepMRMD:0.7356626;iRNA_m5C:0 46607 chr11 18723200 18723200 1 + G T OV 18723197 + 18723177 18723217 41 CACTGGCTCTTCGGACAGGTCTGGTGATGGCAGCGCTGTCG CACTGGCTCTTCGGACAGGTCTGTTGATGGCAGCGCTGTCG < 41bp 0.828549086928751 0.459815494542155 0.5528302 0.47932735 prediction 0.657098173857501 Functional Loss - TMEM86A ENSG00000151117 CDS Human protein_coding chr11:18723197 chr11:18723200 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_51255 0 0 0 0 1 Endoplasmic reticulum 0.500226644117365 0.500231643921647 0.1056604 0 hm5C_site_46607 DeepMRMD:0.1056604;iRNA_m5C:0 46608 chr8 182340 182340 1 + A C rs17744517 182336 + 182316 182356 41 TTTTTCTCTGCCTCCCCTCCCTGCACGTACGGGCCCCGCCC TTTTTCTCTGCCTCCCCTCCCTGCCCGTACGGGCCCCGCCC < 41bp 0.828537905820266 0.495530362119003 0.15279445 0.032824606 prediction 0.657075811640532 Functional Loss - ZNF596 ENSG00000172748 UTR5 Human protein_coding chr8:182336 chr8:182340 . . 0 25 hm5C_associated_SNPs_51256 0 0 0 0 1 cytosol 0.500231643921092 0.50023164392151 0 0 hm5C_site_46608 DeepMRMD:0;iRNA_m5C:0 46609 chrX 106117008 106117008 1 + G T KIRC 106117005 + 106116985 106117025 41 AGGACCCAGTGAGGAAAAAACAGGGAGCCACTTGGAGAAAG AGGACCCAGTGAGGAAAAAACAGTGAGCCACTTGGAGAAAG < 41bp 0.847626491745854 0.519095392375366 0.8911607 0.88374937 prediction 0.657062198740975 Functional Loss - TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106117005 chrX:106117008 nonsynonymous SNV 0.049 0 24 hm5C_associated_SNPs_51257 0 0 0 0 0 exosome 0.500231643921092 0.500231643921094 0.0148226600000001 0 hm5C_site_46609 DeepMRMD:0.0148226600000001;iRNA_m5C:0 46610 chr1 247752462 247752462 1 + G T BLCA 247752459 + 247752439 247752479 41 TTCATGTATCTGCAGCCAGCCAAGAGTAGATCCAGGGACCA TTCATGTATCTGCAGCCAGCCAATAGTAGATCCAGGGACCA < 41bp 0.829665911403092 0.501143658018331 0.21848968 0.59110224 prediction 0.657044506769522 Functional Loss - OR2G2 ENSG00000177489 CDS Human protein_coding chr1:247752459 chr1:247752462 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_51258 0 0 0 0 0 unknown 0.50023164391674 0.500231668890227 0 0 hm5C_site_46610 DeepMRMD:0;iRNA_m5C:0 46611 chrX 72667491 72667491 1 + G T LUAD 72667488 + 72667468 72667508 41 AGCCTACCAGGCCAGGCTGGCGGGTCGCTTGTCCCGACGGA AGCCTACCAGGCCAGGCTGGCGGTTCGCTTGTCCCGACGGA < 41bp 0.862354456663217 0.533832390458514 0.9059751 0.85576534 prediction 0.657044132409407 Functional Loss - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72667488 chrX:72667491 synonymous SNV . 0 24 hm5C_associated_SNPs_51259 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.10041952 0 hm5C_site_46611 DeepMRMD:0.10041952;iRNA_m5C:0 46612 chr19 44570917 44570917 1 + A C rs143104475 44570913 + 44570893 44570933 41 TAGGCATTGTGTGGTCCACACAGGAAAGAAACCAAACAGCA TAGGCATTGTGTGGTCCACACAGGCAAGAAACCAAACAGCA < 41bp 0.828515508119893 0.452444678272768 0.5363779 0.4307324 prediction 0.657031016239786 Functional Loss - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44570913 chr19:44570917 synonymous SNV . 0 25 hm5C_associated_SNPs_51260 0 0 1 0 0 chromatin 0.500231638407922 0.500231643806017 0.0727557999999999 0 hm5C_site_46612 DeepMRMD:0.0727557999999999;iRNA_m5C:0 46613 chr9 27206697 27206697 1 + G T GBM 27206694 + 27206674 27206714 41 ACTGGAATGACATCAAATTTCAAGATGTGATTGGGGAGGGC ACTGGAATGACATCAAATTTCAATATGTGATTGGGGAGGGC < 41bp 0.849394030028964 0.520884106476922 0.356228 0.14455557 prediction 0.657019847104084 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27206694 chr9:27206697 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51261 0 0 0 0 1 nucleoplasm 0.500231644407527 0.500231643537064 0 1.74092606997078e-09 hm5C_site_46613 DeepMRMD:0;iRNA_m5C:1.74092606997078e-09 46614 chr6 36179103 36179103 1 + G T ACC 36179100 + 36179080 36179120 41 AGGTGCAGCTGAAGGAGCTGCTGGAGAAACTGGACCTGGTG AGGTGCAGCTGAAGGAGCTGCTGTAGAAACTGGACCTGGTG < 41bp 0.852238997365077 0.523760869201272 0.7614774 0.47738314 prediction 0.65695625632761 Functional Loss - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36179100 chr6:36179103 stopgain 1.000 1 24 hm5C_associated_SNPs_51262 0 0 1 0 1 chromatin 0.500231641324336 0.500231643910932 0.5229548 0 hm5C_site_46614 DeepMRMD:0.5229548;iRNA_m5C:0 46615 chr17 42429421 42429421 1 + G T PAAD 42429419 + 42429399 42429439 41 ACCACCAGCACTGCTGCCCCCAGGGCTACACGTGTGTAGCT ACCACCAGCACTGCTGCCCCCATGGCTACACGTGTGTAGCT < 41bp 0.828473277990369 0.497134075763536 0.8763882 0.14197937 prediction 0.656946555980737 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42429419 chr17:42429421 nonsynonymous SNV 0.726 0 23 hm5C_associated_SNPs_51263 0 0 1 0 1 Endoplasmic reticulum 0.500231643889502 0.50023164392111 0.7527764 0 hm5C_site_46615 DeepMRMD:0.7527764;iRNA_m5C:0 46616 chr20 20349230 20349230 1 + A C SKCM 20349226 + 20349206 20349246 41 CTCTACAGTCCCACGCGGCCCGTGAGCCGCGAGCACGAGAA CTCTACAGTCCCACGCGGCCCGTGCGCCGCGAGCACGAGAA < 41bp 0.83709408395772 0.508624016755838 0.15256703 0.11573368 prediction 0.656940134403765 Functional Loss - INSM1 ENSG00000173404 CDS Human protein_coding chr20:20349226 chr20:20349230 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_51264 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921093 0 0 hm5C_site_46616 DeepMRMD:0;iRNA_m5C:0 46617 chr5 161113294 161113294 1 + A C HNSC 161113290 + 161113270 161113310 41 GGCAACTTCTACTCAGAAAACGTCAGTCGGATCCTGGACAA GGCAACTTCTACTCAGAAAACGTCCGTCGGATCCTGGACAA < 41bp 0.884479773806324 0.55602360178767 0.17772725 0.21286258 prediction 0.656912344037309 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161113290 chr5:161113294 nonsynonymous SNV 0.949 2 25 hm5C_associated_SNPs_51265 0 0 0 0 2 unknown 0.500231644199969 0.500231667044393 0 0 hm5C_site_46617 DeepMRMD:0;iRNA_m5C:0 46618 chr20 31424572 31424572 1 + G T UCEC 31424569 + 31424549 31424589 41 CTGTGGCTGCCAGACAAGGTCAAGAAACTGCAGTGGCTCCT CTGTGGCTGCCAGACAAGGTCAATAAACTGCAGTGGCTCCT < 41bp 0.828448476625737 0.48788156888882 0.7741688 0.28834414 prediction 0.656896953251474 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31424569 chr20:31424572 stopgain 1.000 1 24 hm5C_associated_SNPs_51266 0 0 1 0 1 Cytosol 0.500231644144423 0.500231644931953 0.5483376 0 hm5C_site_46618 DeepMRMD:0.5483376;iRNA_m5C:0 46619 chr1 47278210 47278210 1 + A C SKCM 47278206 + 47278186 47278226 41 TTGAGGGGCCCAAGTGGTTGCAGCACCGCAAGCTGCTCACA TTGAGGGGCCCAAGTGGTTGCAGCCCCGCAAGCTGCTCACA < 41bp 0.828436166706572 0.447159593182123 0.5018191 0.44877276 prediction 0.656872333413143 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47278206 chr1:47278210 nonsynonymous SNV 0.274 4 25 hm5C_associated_SNPs_51267 0 0 0 0 2 exosome 0.500231643925685 0.500231643921092 0.00363819999999992 9.18598530574855e-12 hm5C_site_46619 DeepMRMD:0.00363819999999992;iRNA_m5C:9.18598530574855e-12 46620 chr14 20692355 20692355 1 + G T LUAD 20692352 + 20692332 20692372 41 CTGGGAAGTTCTGTATAATTCTGGTCTGTGTATGCTGGGTA CTGGGAAGTTCTGTATAATTCTGTTCTGTGTATGCTGGGTA < 41bp 0.8524379619388 0.524006841919121 0.21883291 0.14589253 prediction 0.656862240039359 Functional Loss - OR11H6 ENSG00000176219 CDS Human protein_coding chr14:20692352 chr14:20692355 nonsynonymous SNV 0.655 1 24 hm5C_associated_SNPs_51268 0 0 0 0 0 unknown 0.500231575390323 0.500231643841497 0 0 hm5C_site_46620 DeepMRMD:0;iRNA_m5C:0 46621 chr17 15878047 15878047 1 + G T LIHC 15878044 + 15878024 15878064 41 AGAGGGGTCATTGCTGTCCTCTGGGTCCTTGCCTTTGGCAT AGAGGGGTCATTGCTGTCCTCTGTGTCCTTGCCTTTGGCAT < 41bp 0.828411394779657 0.487942567238737 0.51813436 0.09032273 prediction 0.656822789559315 Functional Loss - ADORA2B ENSG00000170425 CDS Human protein_coding chr17:15878044 chr17:15878047 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51269 0 0 1 0 1 Ribosome 0.500231643880119 0.500231462510883 0.03626872 3.62738471260116e-07 hm5C_site_46621 DeepMRMD:0.03626872;iRNA_m5C:3.62738471260116e-07 46622 chr16 84801883 84801883 1 + G T UCEC 84801880 + 84801860 84801900 41 CAGTTGGATATCCAGTCAGACAAGATACGCACAGTCCAGGA CAGTTGGATATCCAGTCAGACAATATACGCACAGTCCAGGA < 41bp 0.828406656602385 0.477208978224267 0.32709044 0.10952571 prediction 0.656813313204769 Functional Loss - USP10 ENSG00000103194 CDS Human protein_coding chr16:84801880 chr16:84801883 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_51270 0 0 1 0 2 Cytosol 0.500231643921093 0.500231965145391 0 0 hm5C_site_46622 DeepMRMD:0;iRNA_m5C:0 46623 chr1 165513701 165513701 1 + G T BLCA 165513698 + 165513678 165513718 41 CTTGACATACCCCTGAACACCCGGAGGCTGTTCCTGAACGA CTTGACATACCCCTGAACACCCGTAGGCTGTTCCTGAACGA < 41bp 0.828397209842071 0.473840950441772 0.57221514 0.12701881 prediction 0.656794419684142 Functional Loss - LRRC52 ENSG00000162763 CDS Human protein_coding chr1:165513698 chr1:165513701 synonymous SNV . 0 24 hm5C_associated_SNPs_51271 0 0 0 0 0 unknown 0.500231588647884 0.500231643921095 0.14443028 0 hm5C_site_46623 DeepMRMD:0.14443028;iRNA_m5C:0 46624 chr19 37975717 37975717 1 + A C SKCM 37975713 + 37975693 37975733 41 AATGTGGGAAGGCCTTTAGCCAGAATTCACACCTTGCTCAA AATGTGGGAAGGCCTTTAGCCAGACTTCACACCTTGCTCAA < 41bp 0.868189892496143 0.539798563056436 0.7671403 0.8464093 prediction 0.656782658879415 Functional Loss - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37975713 chr19:37975717 nonsynonymous SNV 0.051 0 25 hm5C_associated_SNPs_51272 0 0 0 0 0 exosome 0.500231643921095 0.500231643975042 0 0 hm5C_site_46624 DeepMRMD:0;iRNA_m5C:0 46625 chr12 31254893 31254893 1 + G T LUAD 31254890 + 31254870 31254910 41 ACTGGGAGAAGGGTGGCCTGCTGGGCCGTCTGGCTGCCAGG ACTGGGAGAAGGGTGGCCTGCTGTGCCGTCTGGCTGCCAGG < 41bp 0.855362183685161 0.52699906551052 0.4216478 0.092960656 prediction 0.656726236349283 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31254890 chr12:31254893 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51273 0 0 0 0 1 Cytosol 0.500231643918363 0.500231643921092 0 0 hm5C_site_46625 DeepMRMD:0;iRNA_m5C:0 46626 chr4 57891066 57891066 1 + G T LUAD 57891063 + 57891043 57891083 41 TTTTAAAAGGTATCGGCTAACAAGGGTGAAATTGGTGATGC TTTTAAAAGGTATCGGCTAACAATGGTGAAATTGGTGATGC < 41bp 0.83969424102254 0.511338185955344 0.9201225 0.2085582 prediction 0.656712110134392 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57891063 chr4:57891066 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_51274 0 0 1 0 2 Nucleus 0.500231643921092 0.50023164428703 0.840245 0 hm5C_site_46626 DeepMRMD:0.840245;iRNA_m5C:0 46627 chr6 117248279 117248279 1 + G T PAAD 117248276 + 117248256 117248296 41 GCCGAGGAAGTGTCATTAACCAAGGACCAATGGCAGGGAGG GCCGAGGAAGTGTCATTAACCAATGACCAATGGCAGGGAGG < 41bp 0.828345647597759 0.46081275826994 0.76302385 0.14750361 prediction 0.656691295195517 Functional Loss - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117248276 chr6:117248279 stopgain 1.000 0 24 hm5C_associated_SNPs_51275 0 0 0 0 1 membrane 0.500231643921093 0.500231648028948 0.5260477 0 hm5C_site_46627 DeepMRMD:0.5260477;iRNA_m5C:0 46628 chr12 132195840 132195840 1 + G T LUAD 132195837 + 132195817 132195857 41 AGCGGCGCGAAGGAGGAGGCCGGGCCAGGCGGTGCCGGCGG AGCGGCGCGAAGGAGGAGGCCGGTCCAGGCGGTGCCGGCGG < 41bp 0.833625779289178 0.505303313103551 0.8991662 0.83964896 prediction 0.656644932371253 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132195837 chr12:132195840 synonymous SNV . 0 24 hm5C_associated_SNPs_51276 0 0 1 0 0 Nucleus 0.500231643920126 0.500231642379344 0.11903448 3.08156478112664e-09 hm5C_site_46628 DeepMRMD:0.11903448;iRNA_m5C:3.08156478112664e-09 46629 chr12 120750308 120750308 1 + G T COAD 120750305 + 120750285 120750325 41 AGACTCCCCGGGGGGTGCTGCAAGAGCGTTTCCAAGTCCTG AGACTCCCCGGGGGGTGCTGCAATAGCGTTTCCAAGTCCTG < 41bp 0.828318888488823 0.457994427123065 0.8603896 0.46359405 prediction 0.656637776977646 Functional Loss - SIRT4 ENSG00000089163 CDS Human protein_coding chr12:120750305 chr12:120750308 stopgain 0.906 0 24 hm5C_associated_SNPs_51277 0 0 0 0 0 Cytosol 0.500231650751522 0.500231643921092 0.7207792 1.36608599987653e-08 hm5C_site_46629 DeepMRMD:0.7207792;iRNA_m5C:1.36608599987653e-08 46630 chr19 17534842 17534842 1 + A C LUSC 17534838 + 17534818 17534858 41 TGGATGGGGTTCCCTTCACACTCCACCCACGATTTGAGGGC TGGATGGGGTTCCCTTCACACTCCCCCCACGATTTGAGGGC < 41bp 0.828312514877701 0.420079049257525 0.89443505 0.08974442 prediction 0.656625029755401 Functional Loss - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17534838 chr19:17534842 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_51278 0 0 1 0 2 Ribosome 0.500231642936104 0.500231643921093 0.7888701 0 hm5C_site_46630 DeepMRMD:0.7888701;iRNA_m5C:0 46631 chr19 14581102 14581102 1 + G T UCEC 14581099 + 14581079 14581119 41 GGACTGGGTGTGCTGCTCTACGAGATGCTGGTTGGCGAGGT GGACTGGGTGTGCTGCTCTACGATATGCTGGTTGGCGAGGT < 41bp 0.85225701229273 0.523981001491052 0.1523793 0.023871154 prediction 0.656552021603355 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14581099 chr19:14581102 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_51279 0 0 1 0 1 Ribosome 0.500231643918464 0.500231645765038 0 0 hm5C_site_46631 DeepMRMD:0;iRNA_m5C:0 46632 chr5 74647364 74647364 1 + A C UCEC 74647360 + 74647340 74647380 41 AGTACTGGTGACACAGGAACCTGAAATTGAACTTCCCAGGG AGTACTGGTGACACAGGAACCTGACATTGAACTTCCCAGGG < 41bp 0.828259020056293 0.457730179155258 0.11746943 0.0826281 prediction 0.656518040112585 Functional Loss - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74647360 chr5:74647364 nonsynonymous SNV 0.972 0 25 hm5C_associated_SNPs_51280 0 0 1 0 1 Nucleus 0.500231349331302 0.500231625581276 0 0 hm5C_site_46632 DeepMRMD:0;iRNA_m5C:0 46633 chr10 94454417 94454417 1 + A C PRAD 94454413 + 94454393 94454433 41 AGGTGCTTCTTTGGATAGCTCTCAATGTTCGCCCTCCCCTG AGGTGCTTCTTTGGATAGCTCTCACTGTTCGCCCTCCCCTG < 41bp 0.828252243034615 0.445559444664534 0.2556403 0.1167905 prediction 0.656504486069231 Functional Loss - HHEX ENSG00000152804 CDS Human protein_coding chr10:94454413 chr10:94454417 nonsynonymous SNV 0.906 3 25 hm5C_associated_SNPs_51281 0 0 1 0 0 cytosol 0.500231643921092 0.500231643914698 0 1.2789103109867e-11 hm5C_site_46633 DeepMRMD:0;iRNA_m5C:1.2789103109867e-11 46634 chr11 134179862 134179862 1 + G T rs148189870 134179859 + 134179839 134179879 41 TTGCAGTAGACAGGGCTTTCCGGGACTTAGAGCTCCGCTTC TTGCAGTAGACAGGGCTTTCCGGTACTTAGAGCTCCGCTTC < 41bp 0.847550671082254 0.519306469567995 0.94070804 0.7789998 prediction 0.65648840302852 Functional Loss - GLB1L3 ENSG00000166105 intronic Human protein_coding chr11:134179859 chr11:134179862 . . 0 24 hm5C_associated_SNPs_51282 0 0 0 0 0 Nucleus 0.50023164396738 0.500231592891797 0.32341648 1.02151166192499e-07 hm5C_site_46634 DeepMRMD:0.32341648;iRNA_m5C:1.02151166192499e-07 46635 chr16 11770056 11770056 1 + G T UCEC 11770053 + 11770033 11770073 41 CGCATCAGCCAGTCAGAGGACGAGGAGAGCATCGTGGGGGA CGCATCAGCCAGTCAGAGGACGATGAGAGCATCGTGGGGGA < 41bp 0.862614946811909 0.534375174184973 0.88808024 0.40102956 prediction 0.656479545253873 Functional Loss - SNN ENSG00000184602 CDS Human protein_coding chr16:11770053 chr16:11770056 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_51283 0 0 0 0 0 Ribosome 0.500231640950781 0.500231643906736 0.77616048 0 hm5C_site_46635 DeepMRMD:0.77616048;iRNA_m5C:0 46636 chr9 130487128 130487128 1 + G T LUSC 130487125 + 130487105 130487145 41 TCAGGACGAGGGCGCCAACACGCGCATGGGCCTGCTGCAGG TCAGGACGAGGGCGCCAACACGCTCATGGGCCTGCTGCAGG < 41bp 0.870691356883377 0.542469228107799 0.11196557 0.027999371 prediction 0.656444257551155 Functional Loss - TTC16 ENSG00000167094 CDS Human protein_coding chr9:130487125 chr9:130487128 nonsynonymous SNV 0.871 2 24 hm5C_associated_SNPs_51284 0 0 0 0 2 exosome 0.500231643907507 0.500231643920909 0 0 hm5C_site_46636 DeepMRMD:0;iRNA_m5C:0 46637 chr1 186901923 186901923 1 + G T LUAD 186901920 + 186901900 186901940 41 TGTGGTAGCCATATTGGGTTCAGGTGGGGGTTTCCGAGCCA TGTGGTAGCCATATTGGGTTCAGTTGGGGGTTTCCGAGCCA < 41bp 0.828214902535111 0.471978557889286 0.79545116 0.5262592 prediction 0.656429805070222 Functional Loss - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186901920 chr1:186901923 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51285 0 0 0 0 1 Nucleus 0.500231643929542 0.500231643921092 0.53838392 1.68982605686097e-11 hm5C_site_46637 DeepMRMD:0.53838392;iRNA_m5C:1.68982605686097e-11 46638 chr19 45515474 45515474 1 + G T LUAD 45515471 + 45515451 45515491 41 CGCTACGAGTGCGAGGGCCGCTCGGCCGGCAGCATCCTTGG CGCTACGAGTGCGAGGGCCGCTCTGCCGGCAGCATCCTTGG < 41bp 0.863048422117589 0.534859566733153 0.8674259 0.44247514 prediction 0.656377710768871 Functional Loss - RELB ENSG00000104856 CDS Human protein_coding chr19:45515471 chr19:45515474 synonymous SNV . 0 24 hm5C_associated_SNPs_51286 0 0 0 0 1 Cytosol 0.500231643911024 0.500231695644145 0.7348518 0 hm5C_site_46638 DeepMRMD:0.7348518;iRNA_m5C:0 46639 chr19 58005026 58005026 1 + A C rs183192531 58005022 + 58005002 58005042 41 CAAACATTGGCGTGTTCATACTGGAGAAAGGCCTTACAAGT CAAACATTGGCGTGTTCATACTGGCGAAAGGCCTTACAAGT < 41bp 0.868142813693877 0.539956035368113 0.2512401 0.20608023 prediction 0.656373556651528 Functional Loss - ZNF419 ENSG00000105136 CDS Human protein_coding chr19:58005022 chr19:58005026 synonymous SNV . 0 25 hm5C_associated_SNPs_51287 0 0 1 0 0 exosome 0.500231722914912 0.500231699015713 0 4.77983981284069e-08 hm5C_site_46639 DeepMRMD:0;iRNA_m5C:4.77983981284069e-08 46640 chrX 19362045 19362045 1 + G T rs781441358 19362042 + 19362022 19362062 41 TTATTACGACTCTGTCACGCCGCGGTGCGACTGAGGCGTGG TTATTACGACTCTGTCACGCCGCTGTGCGACTGAGGCGTGG < 41bp 0.828181232763346 0.492241364528429 0.19178236 0.020641237 prediction 0.656362465526692 Functional Loss - PDHA1 ENSG00000131828 UTR5 Human protein_coding chrX:19362042 chrX:19362045 . . 0 24 hm5C_associated_SNPs_51288 0 0 0 0 0 Ribosome 0.500280303780116 0.500230498987565 0 9.96095851006906e-05 hm5C_site_46640 DeepMRMD:0;iRNA_m5C:9.96095851006906e-05 46641 chr18 28913595 28913595 1 + A C UCEC 28913591 + 28913571 28913611 41 TTGCTGTAAGAGGCTCTGACCGAGATGGCGGGGCAGATGGC TTGCTGTAAGAGGCTCTGACCGAGCTGGCGGGGCAGATGGC < 41bp 0.828180711900416 0.45736362719298 0.8590728 0.7905654 prediction 0.656361423800832 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28913591 chr18:28913595 nonsynonymous SNV 0.851 2 25 hm5C_associated_SNPs_51289 0 0 0 0 2 unknown 0.500232996580498 0.500224962393989 0.1370148 1.60683730194844e-05 hm5C_site_46641 DeepMRMD:0.1370148;iRNA_m5C:1.60683730194844e-05 46642 chr2 96071517 96071517 1 + G T LUSC 96071514 + 96071494 96071534 41 CGAAGACGATGACGCAGTTCCTAGAGCAGGGAGAGGCCACC CGAAGACGATGACGCAGTTCCTATAGCAGGGAGAGGCCACC < 41bp 0.855798063018751 0.52761838778919 0.4974809 0.56560624 prediction 0.656359350459123 Functional Loss - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96071514 chr2:96071517 stopgain 0.972 1 24 hm5C_associated_SNPs_51290 0 0 0 0 1 Ribosome 0.500231643921165 0.500231643920192 0 1.94755322979745e-12 hm5C_site_46642 DeepMRMD:0;iRNA_m5C:1.94755322979745e-12 46643 chr19 19650526 19650526 1 + G T BLCA 19650523 + 19650503 19650543 41 AGGAGCCAATGGCGACTGCACTGGGCCTGGAAAGACGGTCC AGGAGCCAATGGCGACTGCACTGTGCCTGGAAAGACGGTCC < 41bp 0.868401922506011 0.540226204497224 0.32619 0.035347283 prediction 0.656351436017574 Functional Loss - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19650523 chr19:19650526 nonsynonymous SNV 0.006 2 24 hm5C_associated_SNPs_51291 0 0 0 0 2 exosome 0.500231643919931 0.50023164394319 0 0 hm5C_site_46643 DeepMRMD:0;iRNA_m5C:0 46644 chr22 38201932 38201932 1 + G T UCEC 38201929 + 38201909 38201949 41 CCAAAGAAGGCATCCAAGCCCAAGAAGGCTGCCTCCAAAGC CCAAAGAAGGCATCCAAGCCCAATAAGGCTGCCTCCAAAGC < 41bp 0.828172326652544 0.473951749331151 0.11908305 0.10751882 prediction 0.656344653305087 Functional Loss - H1F0 ENSG00000189060 CDS Human protein_coding chr22:38201929 chr22:38201932 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51292 0 0 1 0 0 Ribosome 0.500231643920991 0.500231643890356 0 6.1268545792359e-11 hm5C_site_46644 DeepMRMD:0;iRNA_m5C:6.1268545792359e-11 46645 chr19 22847553 22847553 1 + G T LUSC 22847550 + 22847530 22847570 41 TACACATAAGAGAATTCATGCTGGAGAGAAATTCTACAAAT TACACATAAGAGAATTCATGCTGTAGAGAAATTCTACAAAT < 41bp 0.828199336549424 0.500030193423304 0.31202465 0.07231182 prediction 0.65633828625224 Functional Loss - ZNF492 ENSG00000229676 CDS Human protein_coding chr19:22847550 chr19:22847553 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_51293 0 0 0 0 0 exosome 0.500231693984982 0.500232670873639 0 0 hm5C_site_46645 DeepMRMD:0;iRNA_m5C:0 46646 chr16 76523735 76523735 1 + G T LUAD 76523732 + 76523712 76523752 41 ACCGTGCAGAGCACTGTGAACAGGAGTTTACTTATTACTGC ACCGTGCAGAGCACTGTGAACAGTAGTTTACTTATTACTGC < 41bp 0.85377234153816 0.525604424236925 0.7200821 0.098721415 prediction 0.656335834602469 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76523732 chr16:76523735 stopgain 0.902 0 24 hm5C_associated_SNPs_51294 0 0 0 0 1 exosome 0.500230832972019 0.500231644106083 0.4401642 0 hm5C_site_46646 DeepMRMD:0.4401642;iRNA_m5C:0 46647 chr3 128780678 128780678 1 + G T STAD 128780675 + 128780655 128780695 41 ACCTGCCGCGCCCTGGAAACCATGGGGCTGTGGGTGGACTG ACCTGCCGCGCCCTGGAAACCATTGGGCTGTGGGTGGACTG < 41bp 0.861451129427698 0.533284325424322 0.56302476 0.25466216 prediction 0.656333608006752 Functional Loss - GP9 ENSG00000169704 CDS Human protein_coding chr3:128780675 chr3:128780678 nonsynonymous SNV 0.925 0 24 hm5C_associated_SNPs_51295 0 0 0 0 0 Endoplasmic reticulum 0.50023164392117 0.50023426624759 0.12604952 0 hm5C_site_46647 DeepMRMD:0.12604952;iRNA_m5C:0 46648 chr17 46628425 46628425 1 + C A LUAD 46628428 - 46628408 46628448 41 CCCCCGGGGTCGGCGGCGTCCAAGCGGGCGCGGACGGCGTA CCCCCGGGGTCGGCGGCGTCCAATCGGGCGCGGACGGCGTA < 41bp 0.828161123243446 0.482315229008212 0.88515073 0.73578346 prediction 0.656322246486893 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628428 chr17:46628425 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_51296 0 0 1 0 0 Nucleus 0.500231643897102 0.500231643565892 0.29873454 6.62420340802328e-10 hm5C_site_46648 DeepMRMD:0.29873454;iRNA_m5C:6.62420340802328e-10 46649 chr3 183818183 183818183 1 + G T LUAD 183818180 + 183818160 183818200 41 AATGTTAGCTTTCATTTTATCACGGGCGACCCCACGCCCTG AATGTTAGCTTTCATTTTATCACTGGCGACCCCACGCCCTG < 41bp 0.828156224612424 0.478671084915907 0.9588075 0.3836394 prediction 0.656312449224847 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183818180 chr3:183818183 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_51297 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0.917615 0 hm5C_site_46649 DeepMRMD:0.917615;iRNA_m5C:0 46650 chr1 158450612 158450612 1 + G T UCEC 158450609 + 158450589 158450629 41 ATGGTTTATAGCCTCAGAAACAAGGATGTCCAACTTGCTAT ATGGTTTATAGCCTCAGAAACAATGATGTCCAACTTGCTAT < 41bp 0.836043372162298 0.507887560521591 0.6963617 0.1738461 prediction 0.656311623281414 Functional Loss - OR10R2 ENSG00000198965 CDS Human protein_coding chr1:158450609 chr1:158450612 nonsynonymous SNV 0.942 2 24 hm5C_associated_SNPs_51298 0 0 0 0 0 unknown 0.500231643921092 0.500231643920689 0.3927234 8.06688049692639e-13 hm5C_site_46650 DeepMRMD:0.3927234;iRNA_m5C:8.06688049692639e-13 46651 chr3 89390144 89390144 1 + A C UCEC 89390140 + 89390120 89390160 41 GCCCGCCTCACAGTTCTACTCAGGAAGATGGTTCAATGAAC GCCCGCCTCACAGTTCTACTCAGGCAGATGGTTCAATGAAC < 41bp 0.828147842995941 0.466695499262722 0.82957184 0.5760915 prediction 0.656295685991882 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89390140 chr3:89390144 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_51299 0 0 0 0 2 Ribosome 0.500231643924793 0.500231648380965 0.50696068 0 hm5C_site_46651 DeepMRMD:0.50696068;iRNA_m5C:0 46652 chr7 73461081 73461081 1 + G T UCEC 73461078 + 73461058 73461098 41 GTCCCACTGGGGTATCCCATCAAGGCCCCCAAGCTGCCTGG GTCCCACTGGGGTATCCCATCAATGCCCCCAAGCTGCCTGG < 41bp 0.832005128607966 0.503885852175721 0.9128336 0.19456992 prediction 0.65623855286449 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73461078 chr7:73461081 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51300 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.8256672 0 hm5C_site_46652 DeepMRMD:0.8256672;iRNA_m5C:0 46653 chr14 93273266 93273266 1 + G T UCEC 93273263 + 93273243 93273283 41 ATGAAGTTCAGTCTTTAAATCAAGAAATGGCCTCGTTACTC ATGAAGTTCAGTCTTTAAATCAATAAATGGCCTCGTTACTC < 41bp 0.828118065119617 0.488887439466779 0.6135157 0.18556058 prediction 0.656236130239235 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93273263 chr14:93273266 stopgain 0.996 1 24 hm5C_associated_SNPs_51301 0 0 1 0 1 chromatin 0.500231940649736 0.500231538470008 0.2270314 8.0435945681856e-07 hm5C_site_46653 DeepMRMD:0.2270314;iRNA_m5C:8.0435945681856e-07 46654 chr1 247751824 247751824 1 + G T LUAD 247751821 + 247751801 247751841 41 CCATCATTCTGGTTTCTCGTCTGGAACCCAAGCTTCATATG CCATCATTCTGGTTTCTCGTCTGTAACCCAAGCTTCATATG < 41bp 0.828102916006202 0.483078270587682 0.22814184 0.06430584 prediction 0.656205832012405 Functional Loss - OR2G2 ENSG00000177489 CDS Human protein_coding chr1:247751821 chr1:247751824 stopgain 0.002 0 24 hm5C_associated_SNPs_51302 0 0 0 0 0 unknown 0.500231738822813 0.500231643921092 0 1.89803440520109e-07 hm5C_site_46654 DeepMRMD:0;iRNA_m5C:1.89803440520109e-07 46655 chr17 32583311 32583311 1 + G T SARC 32583308 + 32583288 32583328 41 AAGATCTCAGTGCAGAGGCTCGCGAGCTATAGAAGAATCAC AAGATCTCAGTGCAGAGGCTCGCTAGCTATAGAAGAATCAC < 41bp 0.846766130943292 0.518682760355078 0.3203447 0.04480028 prediction 0.656166741176427 Functional Loss - CCL2 ENSG00000108691 CDS Human protein_coding chr17:32583308 chr17:32583311 synonymous SNV . 0 24 hm5C_associated_SNPs_51303 0 0 0 0 2 cytosol 0.500231645497535 0.500231645914711 0 0 hm5C_site_46655 DeepMRMD:0;iRNA_m5C:0 46656 chr2 206590770 206590770 1 + G T HNSC 206590767 + 206590747 206590787 41 CTCCATGGTGATGACAATGGCTGGACCCCCAACTTGGATTC CTCCATGGTGATGACAATGGCTGTACCCCCAACTTGGATTC < 41bp 0.856314816337232 0.528233805564785 0.88523364 0.43213245 prediction 0.656162021544894 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206590767 chr2:206590770 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51304 0 0 1 0 1 Nucleus 0.500231622361681 0.500231643834097 0.77046728 0 hm5C_site_46656 DeepMRMD:0.77046728;iRNA_m5C:0 46657 chr7 141618813 141618813 1 + G T UCEC 141618810 + 141618790 141618830 41 ATGGGAAACACAGTCATCATCATGATTGTCTGTGTGGATAA ATGGGAAACACAGTCATCATCATTATTGTCTGTGTGGATAA < 41bp 0.839812222017401 0.511748451201774 0.16565001 0.059191704 prediction 0.656127541631253 Functional Loss - OR9A4 ENSG00000258083 CDS Human protein_coding chr7:141618810 chr7:141618813 nonsynonymous SNV 0.848 0 24 hm5C_associated_SNPs_51305 0 0 0 0 0 unknown 0.500497047789732 0.500231643936962 0 0.00053080770554037 hm5C_site_46657 DeepMRMD:0;iRNA_m5C:0.00053080770554037 46658 chr3 136047665 136047665 1 + G T UCEC 136047662 + 136047642 136047682 41 GCTGCTCAGGCAGAGTACATCGAGAAGTTTGCCAACCCTTT GCTGCTCAGGCAGAGTACATCGATAAGTTTGCCAACCCTTT < 41bp 0.828050409556657 0.471263661097228 0.87852 0.28979513 prediction 0.656100819113315 Functional Loss - PCCB ENSG00000114054 CDS Human protein_coding chr3:136047662 chr3:136047665 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_51306 0 0 1 0 2 Ribosome 0.500231644269138 0.500231647242634 0.75704 0 hm5C_site_46658 DeepMRMD:0.75704;iRNA_m5C:0 46659 chr1 198668756 198668756 1 + G T UCEC 198668753 + 198668733 198668773 41 AGACTCGCAGACGCCCTCTGCTGGAACTGACACGCAGACAT AGACTCGCAGACGCCCTCTGCTGTAACTGACACGCAGACAT < 41bp 0.836890703318163 0.50885534937146 0.78209895 0.31143203 prediction 0.656070707893406 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198668753 chr1:198668756 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_51307 0 0 0 1 2 Ribosome 0.50023168770365 0.500231853932211 0.5641979 0 hm5C_site_46659 DeepMRMD:0.5641979;iRNA_m5C:0 46660 chr7 143027921 143027921 1 + A C UCEC 143027917 + 143027897 143027937 41 TACTTTGCTGTTCGGAACTACTGGAGAGGATTCTTTGCAGC TACTTTGCTGTTCGGAACTACTGGCGAGGATTCTTTGCAGC < 41bp 0.828024942464599 0.442186539264766 0.46714407 0.2302599 prediction 0.656049884929198 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143027917 chr7:143027921 synonymous SNV . 0 25 hm5C_associated_SNPs_51308 0 0 0 3 1 exosome 0.500231643431096 0.500231081901461 0 1.1230592700251e-06 hm5C_site_46660 DeepMRMD:0;iRNA_m5C:1.1230592700251e-06 46661 chr11 48286107 48286107 1 + A C UCEC 48286103 + 48286083 48286123 41 GAAGCCACAACTTGGAGGGGCAGCACAAGGCCCTCTCCACC GAAGCCACAACTTGGAGGGGCAGCCCAAGGCCCTCTCCACC < 41bp 0.828019357761567 0.484916071673763 0.8552492 0.41743106 prediction 0.656038715523134 Functional Loss - OR4X1 ENSG00000176567 CDS Human protein_coding chr11:48286103 chr11:48286107 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_51309 0 0 0 0 0 unknown 0.500231679237019 0.500231643921093 0.7104984 7.06318530330208e-08 hm5C_site_46661 DeepMRMD:0.7104984;iRNA_m5C:7.06318530330208e-08 46662 chr4 47514700 47514700 1 + G T LUAD 47514697 + 47514677 47514717 41 CTCTCAGACCCCTAAACTGTCAGGAAGGCACCGGATTGTTG CTCTCAGACCCCTAAACTGTCAGTAAGGCACCGGATTGTTG < 41bp 0.858022632721931 0.530024869526653 0.8949548 0.15641785 prediction 0.655995526390556 Functional Loss - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47514697 chr4:47514700 nonsynonymous SNV 0.050 2 24 hm5C_associated_SNPs_51310 0 0 0 0 0 exosome 0.500231643921024 0.500231643921146 0.7899096 0 hm5C_site_46662 DeepMRMD:0.7899096;iRNA_m5C:0 46663 chr1 6648903 6648903 1 + A C KIRC 6648899 + 6648879 6648919 41 AGTGTGGCTACAAGTTTACCCGACAGGTAGGCCAGGGCCTG AGTGTGGCTACAAGTTTACCCGACCGGTAGGCCAGGGCCTG < 41bp 0.827991594590031 0.466024006283151 0.27253813 0.24106994 prediction 0.655983189180062 Functional Loss - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6648899 chr1:6648903 nonsynonymous SNV 0.977 3 25 hm5C_associated_SNPs_51311 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_46663 DeepMRMD:0;iRNA_m5C:0 46664 chr6 90315799 90315799 1 + G T LUSC 90315796 + 90315776 90315816 41 AGCCAAGCTGCTCATTAAAGCAGGAGCCAACGTGCTTGCCA AGCCAAGCTGCTCATTAAAGCAGTAGCCAACGTGCTTGCCA < 41bp 0.853592817260984 0.525606678795883 0.9117335 0.8302076 prediction 0.655972276930201 Functional Loss - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90315796 chr6:90315799 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_51312 0 0 0 0 2 exosome 0.500231644055101 0.500231643921182 0.1630518 2.67839750378585e-10 hm5C_site_46664 DeepMRMD:0.1630518;iRNA_m5C:2.67839750378585e-10 46665 chr1 223940648 223940648 1 + G T READ 223940645 + 223940625 223940665 41 GGCTCCACCGCGGGAGGTTGCAGGAACTACCCGAGTAAGGG GGCTCCACCGCGGGAGGTTGCAGTAACTACCCGAGTAAGGG < 41bp 0.850771449739488 0.522789801282344 0.9005593 0.71047586 prediction 0.655963296914289 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223940645 chr1:223940648 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_51313 0 0 1 0 1 Ribosome 0.500231643921124 0.500231643921055 0.38016688 1.38333788868295e-13 hm5C_site_46665 DeepMRMD:0.38016688;iRNA_m5C:1.38333788868295e-13 46666 chr3 127327356 127327356 1 + G T SARC 127327353 + 127327333 127327373 41 GACAGCTGCAAGCCAGGAGACGAGATAGTAAGTGGCCGGGG GACAGCTGCAAGCCAGGAGACGATATAGTAAGTGGCCGGGG < 41bp 0.861228556850578 0.533271934650104 0.49375883 0.09225047 prediction 0.655913244400948 Functional Loss - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127327353 chr3:127327356 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_51314 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_46666 DeepMRMD:0;iRNA_m5C:0 46667 chr1 207649619 207649619 1 + G T LIHC 207649616 + 207649596 207649636 41 CCTCCGCCTAAGACCCCTAACGGGAACCATACTGGTGGAAA CCTCCGCCTAAGACCCCTAACGGTAACCATACTGGTGGAAA < 41bp 0.827946619097878 0.470995775938603 0.89284754 0.3673376 prediction 0.655893238195757 Functional Loss - CR2 ENSG00000117322 CDS Human protein_coding chr1:207649616 chr1:207649619 synonymous SNV . 0 24 hm5C_associated_SNPs_51315 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.50023164392404 0.78569508 0 hm5C_site_46667 DeepMRMD:0.78569508;iRNA_m5C:0 46668 chr1 207649620 207649620 1 + A C LIHC 207649616 + 207649596 207649636 41 CCTCCGCCTAAGACCCCTAACGGGAACCATACTGGTGGAAA CCTCCGCCTAAGACCCCTAACGGGCACCATACTGGTGGAAA < 41bp 0.827946619097878 0.455660661154255 0.89284754 0.8648938 prediction 0.655893238195757 Functional Loss - CR2 ENSG00000117322 CDS Human protein_coding chr1:207649616 chr1:207649620 nonsynonymous SNV 0.688 0 25 hm5C_associated_SNPs_51316 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921519 0.0559074799999999 0 hm5C_site_46668 DeepMRMD:0.0559074799999999;iRNA_m5C:0 46669 chr12 97337517 97337517 1 + G T HNSC 97337514 + 97337494 97337534 41 AGAAAATATATATGGGAAAACAGGAATCTAAAGACTCCTTC AGAAAATATATATGGGAAAACAGTAATCTAAAGACTCCTTC < 41bp 0.828928267944496 0.5009943984924 0.39922196 0.27409074 prediction 0.655867738904192 Functional Loss - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97337514 chr12:97337517 stopgain 0.982 1 24 hm5C_associated_SNPs_51317 0 0 1 0 1 Nucleus 0.500231643919882 0.500231643921541 0 0 hm5C_site_46669 DeepMRMD:0;iRNA_m5C:0 46670 chr14 56755202 56755202 1 + G T COAD 56755199 + 56755179 56755219 41 ATCGACTTCGTTGTCACAGACACGATTTCTGGCAGCCAGAA ATCGACTTCGTTGTCACAGACACTATTTCTGGCAGCCAGAA < 41bp 0.855783446886709 0.527891583357909 0.02406913 0.008574516 prediction 0.655783727057601 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56755199 chr14:56755202 synonymous SNV . 0 24 hm5C_associated_SNPs_51318 0 0 1 0 1 nucleus 0.500211324821271 0.50023187085017 0 0 hm5C_site_46670 DeepMRMD:0;iRNA_m5C:0 46671 chr20 32379002 32379002 1 + G T UCEC 32378999 + 32378979 32379019 41 CTGCAAACCCGGCGGCCCCCCCAGAGGAGGGCAGCCCCCCG CTGCAAACCCGGCGGCCCCCCCATAGGAGGGCAGCCCCCCG < 41bp 0.827876582550024 0.466689030300711 0.7599935 0.13444945 prediction 0.655753165100047 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32378999 chr20:32379002 nonsynonymous SNV 0.945 0 24 hm5C_associated_SNPs_51319 0 0 0 0 0 chromatin 0.500231645519797 0.500231643921665 0.519987 3.19626414224672e-09 hm5C_site_46671 DeepMRMD:0.519987;iRNA_m5C:3.19626414224672e-09 46672 chr19 58864328 58864328 1 + G T LUAD 58864325 + 58864305 58864345 41 AGCTCCAGGAGCTTGCTCAGCTGGGTCCATCCTGTGGACAA AGCTCCAGGAGCTTGCTCAGCTGTGTCCATCCTGTGGACAA < 41bp 0.85720704711711 0.529335244868308 0.662531 0.15921235 prediction 0.655743604497604 Functional Loss - A1BG ENSG00000121410 CDS Human protein_coding chr19:58864325 chr19:58864328 synonymous SNV . 0 24 hm5C_associated_SNPs_51320 0 0 0 0 1 nucleus 0.500231643920552 0.500231643920737 0.325062 0 hm5C_site_46672 DeepMRMD:0.325062;iRNA_m5C:0 46673 chr19 42584836 42584836 1 + G T LUSC 42584833 + 42584813 42584853 41 CGAGGCGGCCCATGCAGCTGCTGGGCCTGGAGAGGTCCTGG CGAGGCGGCCCATGCAGCTGCTGTGCCTGGAGAGGTCCTGG < 41bp 0.827812759029568 0.47074644959413 0.54738444 0.4084074 prediction 0.655625518059137 Functional Loss - ZNF574 ENSG00000105732 CDS Human protein_coding chr19:42584833 chr19:42584836 nonsynonymous SNV 0.919 2 24 hm5C_associated_SNPs_51321 0 0 0 0 0 Cytosol 0.500231643921092 0.500231662343616 0.0947688799999999 0 hm5C_site_46673 DeepMRMD:0.0947688799999999;iRNA_m5C:0 46674 chr8 56015157 56015157 1 + G T UCEC 56015154 + 56015134 56015174 41 GCTCGGTGCAGGGATTGGCTCCAGGCTTGCCGTCGGGGTCG GCTCGGTGCAGGGATTGGCTCCATGCTTGCCGTCGGGGTCG < 41bp 0.830885754604321 0.503080291125712 0.35109133 0.05054292 prediction 0.655610926957217 Functional Loss - XKR4 ENSG00000206579 CDS Human protein_coding chr8:56015154 chr8:56015157 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_51322 0 0 0 0 0 exosome 0.500231643921092 0.500231149640209 0 9.88561767556462e-07 hm5C_site_46674 DeepMRMD:0;iRNA_m5C:9.88561767556462e-07 46675 chr10 124768459 124768459 1 + G T rs150850221 124768456 + 124768436 124768476 41 AAGGGGGGGTGTGTGCGGGGCGGGTACTGAGTGGGCGGGGC AAGGGGGGGTGTGTGCGGGGCGGTTACTGAGTGGGCGGGGC < 41bp 0.83871674174949 0.510916867656102 0.9232075 0.9054246 prediction 0.655599748186775 Functional Loss - ACADSB ENSG00000095574;ENSG00000196177 upstream Human other chr10:124768456 chr10:124768459 . . 0 24 hm5C_associated_SNPs_51323 1 0 0 0 0 Cytosol 0.500231643921011 0.500231643921092 0.0355657999999999 0 hm5C_site_46675 DeepMRMD:0.0355657999999999;iRNA_m5C:0 Deficiency of 2-methylbutyryl-CoA dehydrogenase Deficiency of 2-methylbutyryl-CoA dehydrogenase 46676 chr15 101427914 101427914 1 + G T LUSC 101427911 + 101427891 101427931 41 GTGGAGAGGGACCGCGCCACCTTGGCCGTGAGTACATGCAC GTGGAGAGGGACCGCGCCACCTTTGCCGTGAGTACATGCAC < 41bp 0.827797752847985 0.481936585259971 0.11379439 0.06530106 prediction 0.655595505695971 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101427911 chr15:101427914 nonsynonymous SNV 0.833 4 24 hm5C_associated_SNPs_51324 0 0 0 0 1 Nucleus 0.50023164392051 0.500231643921089 0 0 hm5C_site_46676 DeepMRMD:0;iRNA_m5C:0 46677 chr6 43042368 43042368 1 + G T KIRP 43042365 + 43042345 43042385 41 TGTTGTCTGTTTCAGGTCTCCCGGGGCCTCAGTGCCAGCAC TGTTGTCTGTTTCAGGTCTCCCGTGGCCTCAGTGCCAGCAC < 41bp 0.827790292906582 0.464746632118659 0.9328885 0.49319786 prediction 0.655580585813164 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43042365 chr6:43042368 synonymous SNV . 0 24 hm5C_associated_SNPs_51325 0 0 1 0 1 Cytosol 0.500231651859118 0.500228403411394 0.865777 6.49689544762744e-06 hm5C_site_46677 DeepMRMD:0.865777;iRNA_m5C:6.49689544762744e-06 46678 chr3 148847543 148847543 1 + G T LUAD 148847540 + 148847520 148847560 41 CTGTACAACCTGCACCCGTTCGGGTCGCAGCAGGTGGTGCC CTGTACAACCTGCACCCGTTCGGTTCGCAGCAGGTGGTGCC < 41bp 0.846886259100381 0.519111433562424 0.898556 0.32026032 prediction 0.655549651075912 Functional Loss - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148847540 chr3:148847543 synonymous SNV . 0 24 hm5C_associated_SNPs_51326 0 0 1 0 0 Ribosome 0.500231643921048 0.500231643921092 0.797112 0 hm5C_site_46678 DeepMRMD:0.797112;iRNA_m5C:0 46679 chr9 104075222 104075222 1 + G T COAD 104075219 + 104075199 104075239 41 CCACTGCTCGGACGTGATTGCTGGTTTCATCCTGGGCACTG CCACTGCTCGGACGTGATTGCTGTTTTCATCCTGGGCACTG < 41bp 0.827767122121596 0.477854953828283 0.15262806 0.06147185 prediction 0.655534244243193 Functional Loss - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104075219 chr9:104075222 nonsynonymous SNV 0.914 5 24 hm5C_associated_SNPs_51327 0 0 1 0 1 cytosol 0.500231550487183 0.500231643983713 0 0 hm5C_site_46679 DeepMRMD:0;iRNA_m5C:0 46680 chrX 151869719 151869719 1 + G T BLCA 151869716 + 151869696 151869736 41 CGGTCACAAAGGCAGAAATGCTGGGGAGTGTCGTCGGAAAT CGGTCACAAAGGCAGAAATGCTGTGGAGTGTCGTCGGAAAT < 41bp 0.827763627773198 0.464392014136892 0.8927054 0.42187414 prediction 0.655527255546396 Functional Loss - MAGEA6 ENSG00000197172 CDS Human protein_coding chrX:151869716 chrX:151869719 nonsynonymous SNV 0.041 1 24 hm5C_associated_SNPs_51328 0 0 1 0 0 Ribosome 0.50023164392109 0.500231609915899 0.7854108 6.80103811045996e-08 hm5C_site_46680 DeepMRMD:0.7854108;iRNA_m5C:6.80103811045996e-08 46681 chr19 50204675 50204675 1 + G T SARC 50204672 + 50204652 50204692 41 TCTGTGCAGGACACCGTGCGCAAGGTGGGCCTGGGAGCGCG TCTGTGCAGGACACCGTGCGCAATGTGGGCCTGGGAGCGCG < 41bp 0.853168625993533 0.525407875898789 0.82810724 0.1904136 prediction 0.655521500189489 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50204672 chr19:50204675 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_51329 0 0 0 0 1 exosome 0.500231643923985 0.5002316442598 0.65621448 0 hm5C_site_46681 DeepMRMD:0.65621448;iRNA_m5C:0 46682 chr9 95776254 95776254 1 + A C COAD 95776250 + 95776230 95776270 41 CAGAAACTGTCAGCCAAGAACGGCACCCCCCAGGACCGCCA CAGAAACTGTCAGCCAAGAACGGCCCCCCCCAGGACCGCCA < 41bp 0.827747999614963 0.426725518040123 0.3043412 0.21298113 prediction 0.655495999229926 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95776250 chr9:95776254 nonsynonymous SNV 0.592 4 25 hm5C_associated_SNPs_51330 0 0 0 0 1 exosome 0.500231643921108 0.500231643921092 0 3.15303338993544e-14 hm5C_site_46682 DeepMRMD:0;iRNA_m5C:3.15303338993544e-14 46683 chr3 183756780 183756780 1 + A C rs6765152 183756776 + 183756756 183756796 41 ACACCTAGGCAGGTGCTCACCTGCAAACTTCAGTCTGGACT ACACCTAGGCAGGTGCTCACCTGCCAACTTCAGTCTGGACT < 41bp 0.827706637562506 0.467125416718633 0.31698608 0.048992008 prediction 0.655413275125013 Functional Loss - HTR3D ENSG00000186090 UTR3 Human protein_coding chr3:183756776 chr3:183756780 . . 0 25 hm5C_associated_SNPs_51331 0 0 0 0 0 unknown 0.500231644335433 0.500231643943899 0 7.83068943022158e-10 hm5C_site_46683 DeepMRMD:0;iRNA_m5C:7.83068943022158e-10 46684 chr19 17885888 17885888 1 + G T LUSC 17885885 + 17885865 17885905 41 AGATTTCCTGGAGCCCGATTCAGGGGTGAGTGATGTGGGAG AGATTTCCTGGAGCCCGATTCAGTGGTGAGTGATGTGGGAG < 41bp 0.827698454898776 0.457593132522234 0.95899254 0.722527 prediction 0.655396909797551 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885885 chr19:17885888 nonsynonymous SNV 0.973 0 24 hm5C_associated_SNPs_51332 0 0 1 0 2 Cytosol 0.500231643921089 0.500229915070868 0.47293108 3.45770044174465e-06 hm5C_site_46684 DeepMRMD:0.47293108;iRNA_m5C:3.45770044174465e-06 46685 chrX 50658901 50658901 1 + A C UCEC 50658897 + 50658877 50658917 41 GCCATGTGGAGCCCTGGGTGCAGAAAAACCCAACCAACCAC GCCATGTGGAGCCCTGGGTGCAGACAAACCCAACCAACCAC < 41bp 0.865352950649285 0.53767341786568 0.07763454 0.09338039 prediction 0.65535906556721 Functional Loss - BMP15 ENSG00000130385 CDS Human protein_coding chrX:50658897 chrX:50658901 nonsynonymous SNV 0.005 2 25 hm5C_associated_SNPs_51333 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46685 DeepMRMD:0;iRNA_m5C:0 46686 chr1 27120642 27120642 1 + A C STAD 27120638 + 27120618 27120658 41 CATCATCCCAGATCACCATGCAGAAGCCTTCTCTCCTCCTC CATCATCCCAGATCACCATGCAGACGCCTTCTCTCCTCCTC < 41bp 0.827663290515619 0.461207470893323 0.15624866 0.10144147 prediction 0.655326581031238 Functional Loss - PIGV ENSG00000060642 CDS Human protein_coding chr1:27120638 chr1:27120642 nonsynonymous SNV 0.847 1 25 hm5C_associated_SNPs_51334 0 0 0 0 2 Endoplasmic reticulum 0.500231643919498 0.500231650881176 0 0 hm5C_site_46686 DeepMRMD:0;iRNA_m5C:0 46687 chr3 129695896 129695896 1 + G T BLCA 129695893 + 129695873 129695913 41 GCCTGAAAAACGCCAGCATCCGGGCAAGAGGGCCCTGGGAG GCCTGAAAAACGCCAGCATCCGGTCAAGAGGGCCCTGGGAG < 41bp 0.870313297188566 0.542691002882334 0.89596725 0.2661364 prediction 0.655244588612465 Functional Loss - TRH ENSG00000170893 CDS Human protein_coding chr3:129695893 chr3:129695896 nonsynonymous SNV 0.483 4 24 hm5C_associated_SNPs_51335 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.7919345 0 hm5C_site_46687 DeepMRMD:0.7919345;iRNA_m5C:0 46688 chr19 19338106 19338106 1 + G T UCEC 19338103 + 19338083 19338123 41 GTTGCAGGTTCTGCTGGTGGCAAGAGCTCCCCAGAGCCCTG GTTGCAGGTTCTGCTGGTGGCAATAGCTCCCCAGAGCCCTG < 41bp 0.827613242796261 0.465046994404914 0.47594875 0.31124756 prediction 0.655226485592522 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19338103 chr19:19338106 nonsynonymous SNV 0.735 2 24 hm5C_associated_SNPs_51336 0 0 0 0 1 exosome 0.500231643259412 0.500231643929577 0 0 hm5C_site_46688 DeepMRMD:0;iRNA_m5C:0 46689 chr6 54254606 54254606 1 + G T LUAD 54254603 + 54254583 54254623 41 CTGCAGATTGCTGCCAATTCCTGGGGAAAGTCATGGGGAGA CTGCAGATTGCTGCCAATTCCTGTGGAAAGTCATGGGGAGA < 41bp 0.830667124229016 0.503054488952948 0.87702876 0.33164597 prediction 0.655225270552135 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54254603 chr6:54254606 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51337 0 0 0 0 1 exosome 0.500231648089358 0.500399206477779 0.75405752 0 hm5C_site_46689 DeepMRMD:0.75405752;iRNA_m5C:0 46690 chr3 186395621 186395621 1 + G T UCEC 186395618 + 186395598 186395638 41 GAATCATGTCCAGGGAAGTTCAAGAGTGGGTTTCCACAAGT GAATCATGTCCAGGGAAGTTCAATAGTGGGTTTCCACAAGT < 41bp 0.857138085994957 0.529528410094438 0.3300358 0.09756601 prediction 0.655219351801038 Functional Loss - HRG ENSG00000113905 CDS Human protein_coding chr3:186395618 chr3:186395621 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_51338 0 0 0 0 0 exosome 0.500231643917501 0.500231643921076 0 0 hm5C_site_46690 DeepMRMD:0;iRNA_m5C:0 46691 chr4 25671280 25671280 1 + G T HNSC 25671277 + 25671257 25671297 41 TCCCTCCCATAGAGCTTTTGCAGGAGCCACTGTCCATGACT TCCCTCCCATAGAGCTTTTGCAGTAGCCACTGTCCATGACT < 41bp 0.827594222875478 0.455518170643206 0.91396296 0.35466623 prediction 0.655188445750957 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25671277 chr4:25671280 nonsynonymous SNV 0.457 5 24 hm5C_associated_SNPs_51339 0 0 0 0 1 nucleus 0.500231643919333 0.500231643921093 0.82792592 0 hm5C_site_46691 DeepMRMD:0.82792592;iRNA_m5C:0 46692 chr13 58208761 58208761 1 + G T THCA 58208758 + 58208738 58208778 41 ATCCCTTCCCGAGGGGGTACCACGGGTGAATGGCGAGCAGC ATCCCTTCCCGAGGGGGTACCACTGGTGAATGGCGAGCAGC < 41bp 0.827593806082156 0.464875620769732 0.9256841 0.8104828 prediction 0.655187612164312 Functional Loss - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58208758 chr13:58208761 nonsynonymous SNV 0.965 1 24 hm5C_associated_SNPs_51340 0 0 0 0 0 exosome 0.500275282877356 0.500231643921093 0.2304026 8.72779125276057e-05 hm5C_site_46692 DeepMRMD:0.2304026;iRNA_m5C:8.72779125276057e-05 46693 chr3 111710446 111710446 1 + A C rs150288585 111710442 + 111710422 111710462 41 CAGGTTGCCGATCGAGTACTCAGCACAGATGTGGATGTCAT CAGGTTGCCGATCGAGTACTCAGCCCAGATGTGGATGTCAT < 41bp 0.865760125583839 0.538171585069506 0.17108613 0.11646509 prediction 0.655177081028667 Functional Loss - ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111710442 chr3:111710446 nonsynonymous SNV 0.921 0 25 hm5C_associated_SNPs_51341 0 0 1 0 0 Ribosome 0.500231773872841 0.500231643889837 0 2.59966009164003e-07 hm5C_site_46693 DeepMRMD:0;iRNA_m5C:2.59966009164003e-07 46694 chr21 44441534 44441534 1 + A C SKCM 44441530 + 44441510 44441550 41 TGATGCGGTCCTGGCTCTTCCAGCACATCGGGGTAAGGACG TGATGCGGTCCTGGCTCTTCCAGCCCATCGGGGTAAGGACG < 41bp 0.827552315959785 0.43985184366774 0.10287872 0.21612805 prediction 0.655104631919569 Functional Loss - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44441530 chr21:44441534 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_51342 0 0 1 0 1 Ribosome 0.500231643921099 0.500231643921099 0 0 hm5C_site_46694 DeepMRMD:0;iRNA_m5C:0 46695 chr15 65918266 65918266 1 + G T LUSC 65918263 + 65918243 65918283 41 TGGGTGAAGGAGCAGCTCAGCAGGAGGCCAGTGGCCAAGGT TGGGTGAAGGAGCAGCTCAGCAGTAGGCCAGTGGCCAAGGT < 41bp 0.855881995905936 0.5283406724164 0.8234976 0.36213464 prediction 0.655082646979072 Functional Loss - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65918263 chr15:65918266 nonsynonymous SNV 0.648 0 24 hm5C_associated_SNPs_51343 0 0 0 0 1 Endoplasmic reticulum 0.500231643921094 0.500231643921092 0.6469952 3.77475828372553e-15 hm5C_site_46695 DeepMRMD:0.6469952;iRNA_m5C:3.77475828372553e-15 46696 chr16 55806303 55806303 1 + G T ESCA 55806300 + 55806280 55806320 41 GCACAGGGGATGAACACAGCCCGGGGAACTGGGGTCACCTG GCACAGGGGATGAACACAGCCCGTGGAACTGGGGTCACCTG < 41bp 0.827540242426418 0.487289024775414 0.7856755 0.111860484 prediction 0.655080484852836 Functional Loss - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55806300 chr16:55806303 . . 0 24 hm5C_associated_SNPs_51344 0 0 0 0 1 unknown 0.500231616034961 0.500231863678596 0.571351 0 hm5C_site_46696 DeepMRMD:0.571351;iRNA_m5C:0 46697 chr2 26676417 26676417 1 + G T LUAD 26676414 + 26676394 26676434 41 CGTCATGGGTCTGAAGAAGCCTAGGTGGGCTGCGGGGCTGG CGTCATGGGTCTGAAGAAGCCTATGTGGGCTGCGGGGCTGG < 41bp 0.864299395987559 0.536769365228673 0.49078238 0.15553707 prediction 0.655060061517773 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26676414 chr2:26676417 nonsynonymous SNV 0.558 4 24 hm5C_associated_SNPs_51345 0 0 0 0 1 exosome 0.500231643921237 0.500231643921092 0 2.89324120217316e-13 hm5C_site_46697 DeepMRMD:0;iRNA_m5C:2.89324120217316e-13 46698 chr7 30673470 30673470 1 + G T LIHC 30673467 + 30673447 30673487 41 ACTGGTAAAAAAGAGACAATCGAGGAATGAGGACAATTTTG ACTGGTAAAAAAGAGACAATCGATGAATGAGGACAATTTTG < 41bp 0.827516963929529 0.484041191302774 0.868864 0.10827747 prediction 0.655033927859058 Functional Loss - GARS ENSG00000106105 CDS Human protein_coding chr7:30673467 chr7:30673470 nonsynonymous SNV 0.967 1 24 hm5C_associated_SNPs_51346 0 0 1 0 0 Cytosol 0.500231622801274 0.500231649153732 0.737728 0 hm5C_site_46698 DeepMRMD:0.737728;iRNA_m5C:0 46699 chr1 55118915 55118915 1 + G T UCEC 55118912 + 55118892 55118932 41 GTTCTTGTTCTGGTGAAGCCCTGGACCTGGATTCCAAGGAT GTTCTTGTTCTGGTGAAGCCCTGTACCTGGATTCCAAGGAT < 41bp 0.827489264109093 0.476718251930656 0.6540412 0.26977396 prediction 0.654978528218185 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55118912 chr1:55118915 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_51347 0 0 0 0 0 exosome 0.500231643920333 0.500231643921092 0.3080824 0 hm5C_site_46699 DeepMRMD:0.3080824;iRNA_m5C:0 46700 chr7 1273233 1273233 1 + G T UCEC 1273230 + 1273210 1273250 41 CCAACTTCACCGGCTGGCAGCTGGAGGAGCTGGAGAAGGCG CCAACTTCACCGGCTGGCAGCTGTAGGAGCTGGAGAAGGCG < 41bp 0.82748524512937 0.482132812398508 0.4640494 0.26804024 prediction 0.65497049025874 Functional Loss - UNCX ENSG00000164853 CDS Human protein_coding chr7:1273230 chr7:1273233 stopgain 1.000 0 24 hm5C_associated_SNPs_51348 0 0 0 0 2 exosome 0.500231643921092 0.500231643948391 0 0 hm5C_site_46700 DeepMRMD:0;iRNA_m5C:0 46701 chr12 95879729 95879729 1 + G T COAD 95879726 + 95879706 95879746 41 ATGGTGTATTTCCCAAAGGACAAGAATGCGAATACCCACCC ATGGTGTATTTCCCAAAGGACAATAATGCGAATACCCACCC < 41bp 0.843887522416171 0.51640386165396 0.17842576 0.23804069 prediction 0.654967321524421 Functional Loss - METAP2 ENSG00000111142 CDS Human protein_coding chr12:95879726 chr12:95879729 stopgain 0.997 1 24 hm5C_associated_SNPs_51349 0 0 1 0 3 Ribosome 0.500231643921125 0.50023164391628 0 9.69135882655792e-12 hm5C_site_46701 DeepMRMD:0;iRNA_m5C:9.69135882655792e-12 46702 chr11 60689353 60689353 1 + G T UCEC 60689350 + 60689330 60689370 41 ACTGGCTGCTGTCTCTGCTCCTCGGCTTGGTCTTGGCCTTG ACTGGCTGCTGTCTCTGCTCCTCTGCTTGGTCTTGGCCTTG < 41bp 0.827474766453138 0.469438853519732 0.35599658 0.13641813 prediction 0.654949532906277 Functional Loss - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60689350 chr11:60689353 nonsynonymous SNV 0.983 3 24 hm5C_associated_SNPs_51350 0 0 1 0 0 Ribosome 0.500231646100865 0.500166217122122 0 0.000130857957486574 hm5C_site_46702 DeepMRMD:0;iRNA_m5C:0.000130857957486574 46703 chr19 55598801 55598801 1 + G T BLCA 55598798 + 55598778 55598818 41 TCACCGTGCAGCGCTCGCTGCTGGAGGTGAGCCGGACCGCT TCACCGTGCAGCGCTCGCTGCTGTAGGTGAGCCGGACCGCT < 41bp 0.827471384787443 0.478614730174615 0.34981436 0.23840141 prediction 0.654942769574887 Functional Loss - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55598798 chr19:55598801 stopgain 0.998 1 24 hm5C_associated_SNPs_51351 0 0 0 0 1 Cytosol 0.500231642251208 0.500231643719686 0 0 hm5C_site_46703 DeepMRMD:0;iRNA_m5C:0 46704 chr2 149247385 149247385 1 + G T LUAD 149247382 + 149247362 149247402 41 TGATGGTAGGCTGAGGAATTCAAGAGGGGCTCGGCTGCCCA TGATGGTAGGCTGAGGAATTCAATAGGGGCTCGGCTGCCCA < 41bp 0.827470246424539 0.485465859502927 0.87960035 0.42000017 prediction 0.654940492849078 Functional Loss - MBD5 ENSG00000204406 CDS Human protein_coding chr2:149247382 chr2:149247385 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51352 0 0 0 0 0 chromatin 0.500231643921085 0.500231643921092 0.7592007 0 hm5C_site_46704 DeepMRMD:0.7592007;iRNA_m5C:0 46705 chr5 3599946 3599946 1 + G T HNSC 3599943 + 3599923 3599963 41 GGCCCCAGAGCCGGGCAGCACGCGCCTGCTGAGCCCCGGCG GGCCCCAGAGCCGGGCAGCACGCTCCTGCTGAGCCCCGGCG < 41bp 0.82745428621078 0.467237318320879 0.47458595 0.27858996 prediction 0.65490857242156 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3599943 chr5:3599946 nonsynonymous SNV 0.946 1 24 hm5C_associated_SNPs_51353 0 0 0 0 0 exosome 0.500231643921092 0.500231643937525 0 0 hm5C_site_46705 DeepMRMD:0;iRNA_m5C:0 46706 chr20 30525265 30525265 1 + G T UCEC 30525262 + 30525242 30525282 41 AGCCAGGAAGACTATGAGCTCAAGACCTGCCTCCTGGAAGA AGCCAGGAAGACTATGAGCTCAATACCTGCCTCCTGGAAGA < 41bp 0.827440550275853 0.47809662729261 0.19367671 0.10393268 prediction 0.654881100551706 Functional Loss - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30525262 chr20:30525265 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51354 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46706 DeepMRMD:0;iRNA_m5C:0 46707 chr9 135546108 135546108 1 + G T LGG 135546105 + 135546085 135546125 41 GAGCCAGCAGCGGACGCGGCCCCGGGGCCCAGCGCTGCATT GAGCCAGCAGCGGACGCGGCCCCTGGGCCCAGCGCTGCATT < 41bp 0.846586066177746 0.519163451893041 0.3882633 0.1647054 prediction 0.65484522856941 Functional Loss - GTF3C4 ENSG00000125484 CDS Human protein_coding chr9:135546105 chr9:135546108 synonymous SNV . 0 24 hm5C_associated_SNPs_51355 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643922525 0 0 hm5C_site_46707 DeepMRMD:0;iRNA_m5C:0 46708 chr7 57529546 57529546 1 + G T LUSC 57529543 + 57529523 57529563 41 TACTCATAAGAGGATTCATACTGGAGAGAAACCCTACAAAT TACTCATAAGAGGATTCATACTGTAGAGAAACCCTACAAAT < 41bp 0.82820918390092 0.500806335635905 0.19477236 0.026263773 prediction 0.654805696530031 Functional Loss - ZNF716 ENSG00000182111 CDS Human protein_coding chr7:57529543 chr7:57529546 nonsynonymous SNV 0.083 2 24 hm5C_associated_SNPs_51356 0 0 0 0 0 unknown 0.500231643920104 0.500231643920437 0 0 hm5C_site_46708 DeepMRMD:0;iRNA_m5C:0 46709 chr13 70681368 70681368 1 + G T LUAD 70681365 + 70681345 70681385 41 ATCCTTCACCTGTTGCCTGGCTAGAGTTGTCTGGCTCCACT ATCCTTCACCTGTTGCCTGGCTATAGTTGTCTGGCTCCACT < 41bp 0.827393783127045 0.496802336066042 0.33642167 0.15791526 prediction 0.654787566254091 Functional Loss - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681365 chr13:70681368 nonsynonymous SNV 0.885 1 24 hm5C_associated_SNPs_51357 0 0 0 0 0 Nucleus 0.500231643923518 0.500231643921092 0 4.85100848379716e-12 hm5C_site_46709 DeepMRMD:0;iRNA_m5C:4.85100848379716e-12 46710 chr12 132400636 132400636 1 + G T LUAD 132400633 + 132400613 132400653 41 TGCAGTCCTGCCGGAACCTGCGGGGCTCACCCAAGCTGCCC TGCAGTCCTGCCGGAACCTGCGGTGCTCACCCAAGCTGCCC < 41bp 0.82737268156164 0.463676806774189 0.92183745 0.79475945 prediction 0.654745363123279 Functional Loss - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132400633 chr12:132400636 nonsynonymous SNV 0.739 0 24 hm5C_associated_SNPs_51358 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921091 0.254156 1.99840144432528e-15 hm5C_site_46710 DeepMRMD:0.254156;iRNA_m5C:1.99840144432528e-15 46711 chr3 128998742 128998742 1 + G T UCEC 128998739 + 128998719 128998759 41 CAACAGCCCAGTGCTTCTGTCTCGACTGCACTTTGAGAAGG CAACAGCCCAGTGCTTCTGTCTCTACTGCACTTTGAGAAGG < 41bp 0.827371976209646 0.479096504139699 0.11583236 0.41206697 prediction 0.654743952419292 Functional Loss - HMCES ENSG00000183624 CDS Human protein_coding chr3:128998739 chr3:128998742 nonsynonymous SNV 0.527 1 24 hm5C_associated_SNPs_51359 0 0 1 0 1 Ribosome 0.500231667696936 0.500228927885796 0 5.47962228081289e-06 hm5C_site_46711 DeepMRMD:0;iRNA_m5C:5.47962228081289e-06 46712 chr12 53453118 53453118 1 + G T SKCM 53453115 + 53453095 53453135 41 CTGGGCGCGAGACGGCCATCCTAGATGACGAAGAGCAGCCC CTGGGCGCGAGACGGCCATCCTATATGACGAAGAGCAGCCC < 41bp 0.846739146293776 0.519368849029794 0.31247574 0.6889116 prediction 0.654740594527964 Functional Loss - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53453115 chr12:53453118 nonsynonymous SNV 0.429 4 24 hm5C_associated_SNPs_51360 0 0 1 0 0 cytosol 0.500231646005585 0.50023157512757 0 1.41756029359286e-07 hm5C_site_46712 DeepMRMD:0;iRNA_m5C:1.41756029359286e-07 46713 chr1 6305511 6305511 1 + G T SARC 6305508 + 6305488 6305528 41 CGAGTCGCTGCGCCGAGAGTCCCGGGCTGGGCCTGCGCGTG CGAGTCGCTGCGCCGAGAGTCCCTGGCTGGGCCTGCGCGTG < 41bp 0.827360875985985 0.479222557573777 0.33083445 0.122501284 prediction 0.65472175197197 Functional Loss - HES3 ENSG00000173673 CDS Human protein_coding chr1:6305508 chr1:6305511 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_51361 0 0 0 0 0 unknown 0.5002316615097 0.500231643926627 0 3.51661453290575e-08 hm5C_site_46713 DeepMRMD:0;iRNA_m5C:3.51661453290575e-08 46714 chrX 27766612 27766612 1 + G T UCEC 27766609 + 27766589 27766629 41 CTGTGTTGGCGTGCAGTGGCCTAGATCATGATGTCAAGATC CTGTGTTGGCGTGCAGTGGCCTATATCATGATGTCAAGATC < 41bp 0.827360663249717 0.478856977323409 0.02184391 0.0048185885 prediction 0.654721326499434 Functional Loss - DCAF8L2 ENSG00000189186 CDS Human protein_coding chrX:27766609 chrX:27766612 nonsynonymous SNV 0.951 3 24 hm5C_associated_SNPs_51362 0 0 0 0 0 exosome 0.500261952815951 0.500231829966509 0 6.02456988854083e-05 hm5C_site_46714 DeepMRMD:0;iRNA_m5C:6.02456988854083e-05 46715 chr17 40714919 40714919 1 + G T UCEC 40714916 + 40714896 40714936 41 CTACTGACCAATATCCGAACCAAGAGCACCTTTCTCCCTCC CTACTGACCAATATCCGAACCAATAGCACCTTTCTCCCTCC < 41bp 0.827310183375655 0.458947839442238 0.2117956 0.012788177 prediction 0.65462036675131 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40714916 chr17:40714919 nonsynonymous SNV 0.779 0 24 hm5C_associated_SNPs_51363 0 0 1 0 0 Ribosome 0.500231643923889 0.500231643920431 0 6.9173555772295e-12 hm5C_site_46715 DeepMRMD:0;iRNA_m5C:6.9173555772295e-12 46716 chr2 113243499 113243499 1 + G T LUAD 113243496 + 113243476 113243516 41 CTCCTCTTTCCTTCCTAGGTCACGAGCCCGGGCTGGTACAG CTCCTCTTTCCTTCCTAGGTCACTAGCCCGGGCTGGTACAG < 41bp 0.827306601474036 0.466097531226986 0.1572327 0.099561125 prediction 0.654613202948071 Functional Loss - TTL ENSG00000114999 CDS Human protein_coding chr2:113243496 chr2:113243499 stopgain 0.994 1 24 hm5C_associated_SNPs_51364 0 0 1 0 2 Cytosol 0.50023164404269 0.500231643925597 0 2.34185781877727e-10 hm5C_site_46716 DeepMRMD:0;iRNA_m5C:2.34185781877727e-10 46717 chr3 111700719 111700719 1 + A C UCEC 111700715 + 111700695 111700735 41 GAAGCTAAAAGGCAAAAGTCCAGGAATTATCTTCATCCCTG GAAGCTAAAAGGCAAAAGTCCAGGCATTATCTTCATCCCTG < 41bp 0.827306071390083 0.471550201340452 0.5058355 0.5359766 prediction 0.654612142780166 Functional Loss - ABHD10 ENSG00000144827 CDS Human protein_coding chr3:111700715 chr3:111700719 synonymous SNV . 0 25 hm5C_associated_SNPs_51365 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643921093 0 0 hm5C_site_46717 DeepMRMD:0;iRNA_m5C:0 46718 chr7 148495716 148495716 1 + G T HNSC 148495713 + 148495693 148495733 41 CAATGAAAACCGAACAGAAGCAGGAACAAGAAACCACACAC CAATGAAAACCGAACAGAAGCAGTAACAAGAAACCACACAC < 41bp 0.833554663136687 0.506249677125456 0.49150324 0.09102911 prediction 0.654609972022462 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148495713 chr7:148495716 stopgain 1.000 1 24 hm5C_associated_SNPs_51366 0 0 1 0 2 Nucleus 0.500231394328595 0.500230842027995 0 1.10460119917555e-06 hm5C_site_46718 DeepMRMD:0;iRNA_m5C:1.10460119917555e-06 46719 chr19 9268713 9268713 1 + G T UCEC 9268710 + 9268690 9268730 41 CTTGGAGCAGGAGGAGGAGCCGAGGACAGAGGAGAGGGGCG CTTGGAGCAGGAGGAGGAGCCGATGACAGAGGAGAGGGGCG < 41bp 0.868597421946661 0.541302819738909 0.8903545 0.6598621 prediction 0.654589204415505 Functional Loss - ZNF317 ENSG00000130803 CDS Human protein_coding chr19:9268710 chr19:9268713 nonsynonymous SNV 0.246 1 24 hm5C_associated_SNPs_51367 0 0 1 0 2 Nucleus 0.500231643760373 0.500231643950357 0.4609848 0 hm5C_site_46719 DeepMRMD:0.4609848;iRNA_m5C:0 46720 chr10 46999448 46999448 1 + G T LUSC 46999445 + 46999425 46999465 41 CTTCTAACTCAGCCTGGATGCTGGGGGCGAGTCAGTTGTCA CTTCTAACTCAGCCTGGATGCTGTGGGCGAGTCAGTTGTCA < 41bp 0.866997873148603 0.539728177915677 0.79671645 0.29624724 prediction 0.654539390465853 Functional Loss - GPRIN2 ENSG00000204175 CDS Human protein_coding chr10:46999445 chr10:46999448 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_51368 0 0 0 0 0 exosome 0.500231643922551 0.500231475412337 0.5934329 3.37020428897716e-07 hm5C_site_46720 DeepMRMD:0.5934329;iRNA_m5C:3.37020428897716e-07 46721 chr12 27863860 27863860 1 + G T TGCT 27863857 + 27863837 27863877 41 GCATTCTCCACTGCCGTCTACTCGGCCACTCCGGTCCCGAC GCATTCTCCACTGCCGTCTACTCTGCCACTCCGGTCCCGAC < 41bp 0.848282809841863 0.521030742135617 0.23484296 0.094038635 prediction 0.654504135412492 Functional Loss - MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27863857 chr12:27863860 synonymous SNV . 0 24 hm5C_associated_SNPs_51369 0 0 1 0 1 Ribosome 0.500231645094202 0.500231640432662 0 9.32308097389978e-09 hm5C_site_46721 DeepMRMD:0;iRNA_m5C:9.32308097389978e-09 46722 chr20 24523956 24523956 1 + G T HNSC 24523953 + 24523933 24523973 41 GTGAGCCGATGCAGCAGCTGCTGGACCCCAACACCCTGCAG GTGAGCCGATGCAGCAGCTGCTGTACCCCAACACCCTGCAG < 41bp 0.862117580998164 0.534869102319271 0.34520084 0.24666852 prediction 0.654496957357786 Functional Loss - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24523953 chr20:24523956 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51370 0 0 0 0 0 exosome 0.500231643921094 0.500231643921092 0 3.5527136788005e-15 hm5C_site_46722 DeepMRMD:0;iRNA_m5C:3.5527136788005e-15 46723 chr1 16378865 16378865 1 + G T UCEC 16378862 + 16378842 16378882 41 TATGATGGCACCGTCATTGTCAAGAAGCTGCCATACCTGCC TATGATGGCACCGTCATTGTCAATAAGCTGCCATACCTGCC < 41bp 0.867023181440277 0.539785658951451 0.57353145 0.07088184 prediction 0.654475044977652 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16378862 chr1:16378865 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51371 0 0 0 0 1 exosome 0.500231643921093 0.500231643921093 0.1470629 0 hm5C_site_46723 DeepMRMD:0.1470629;iRNA_m5C:0 46724 chr21 38865437 38865437 1 + G T CESC 38865434 + 38865414 38865454 41 TATTTTGGTTGAAATGCACACTGGAGAACCTCTGTTCAGTG TATTTTGGTTGAAATGCACACTGTAGAACCTCTGTTCAGTG < 41bp 0.827223002426549 0.490637182682449 0.043127 0.022988856 prediction 0.654446004853097 Functional Loss - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38865434 chr21:38865437 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51372 0 0 1 0 1 Cytosol 0.500231620308675 0.500231639307942 0 0 hm5C_site_46724 DeepMRMD:0;iRNA_m5C:0 46725 chr6 44149048 44149048 1 + G T UCEC 44149045 + 44149025 44149065 41 AAGATCCTGTGGAAAAAACTCAAGAAATGGATGGTAAAGGG AAGATCCTGTGGAAAAAACTCAATAAATGGATGGTAAAGGG < 41bp 0.827204868207009 0.474714168174893 0.11148837 0.04629031 prediction 0.654409736414017 Functional Loss - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44149045 chr6:44149048 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51373 0 0 0 0 2 exosome 0.500231643934436 0.500231643921375 0 2.6123325724825e-11 hm5C_site_46725 DeepMRMD:0;iRNA_m5C:2.6123325724825e-11 46726 chr12 112926888 112926888 1 + G T COAD 112926885 + 112926865 112926905 41 GATGGTGCGGTCTCAGAGGTCAGGGATGGTCCAGACAGAAG GATGGTGCGGTCTCAGAGGTCAGTGATGGTCCAGACAGAAG < 41bp 0.827194434481082 0.465749501994531 0.9094713 0.48002777 prediction 0.654388868962163 Functional Loss - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926885 chr12:112926888 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_51374 5 0 1 0 2 Ribosome 0.500231643921194 0.500314623312474 0.8189426 0 hm5C_site_46726 DeepMRMD:0.8189426;iRNA_m5C:0 Squamous cell carcinoma of lung Squamous cell carcinoma of lung 46727 chr2 235962337 235962337 1 + G T LUAD 235962334 + 235962314 235962354 41 GAGCTGCACCTGGGCCTGGACAAGATGAAAAACCCCATCAC GAGCTGCACCTGGGCCTGGACAATATGAAAAACCCCATCAC < 41bp 0.827183896639107 0.477244143820444 0.8770405 0.25979146 prediction 0.654367793278214 Functional Loss - SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235962334 chr2:235962337 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51375 0 0 1 0 0 cytosol 0.500231643922912 0.500231643921093 0.754081 3.63953311932619e-12 hm5C_site_46727 DeepMRMD:0.754081;iRNA_m5C:3.63953311932619e-12 46728 chr7 129357122 129357122 1 + G T LUAD 129357120 + 129357100 129357140 41 CATCCAGACGACGCAAGCATCAGAGGCCACCCAGGCGGTGG CATCCAGACGACGCAAGCATCATAGGCCACCCAGGCGGTGG < 41bp 0.833959279336037 0.506781716631632 0.9065064 0.16932696 prediction 0.654355125408809 Functional Loss - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129357120 chr7:129357122 stopgain 1.000 1 23 hm5C_associated_SNPs_51376 0 0 1 0 2 chromatin 0.500231643921898 0.500231727675125 0.8130128 0 hm5C_site_46728 DeepMRMD:0.8130128;iRNA_m5C:0 46729 chr11 129321257 129321257 1 + A C STAD 129321253 + 129321233 129321273 41 CAGAGCCACCAGACCCGCCCCAGGAGTTGCCAATACCCTCT CAGAGCCACCAGACCCGCCCCAGGCGTTGCCAATACCCTCT < 41bp 0.872252238912994 0.545078646961035 0.85136175 0.5356957 prediction 0.654347183903919 Functional Loss - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129321253 chr11:129321257 nonsynonymous SNV 0.931 1 25 hm5C_associated_SNPs_51377 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.6313321 0 hm5C_site_46729 DeepMRMD:0.6313321;iRNA_m5C:0 46730 chr20 39980508 39980508 1 + G T ESCA 39980505 + 39980485 39980525 41 TGGGCCCCAGTGACATCTACCTGGATGACTTGCCCTCCCTG TGGGCCCCAGTGACATCTACCTGTATGACTTGCCCTCCCTG < 41bp 0.875872766050282 0.548701849906473 0.867289 0.17240363 prediction 0.654341832287619 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39980505 chr20:39980508 nonsynonymous SNV 0.914 4 24 hm5C_associated_SNPs_51378 0 0 0 0 2 Nucleus 0.500231595462544 0.503595577105972 0.734578 0 hm5C_site_46730 DeepMRMD:0.734578;iRNA_m5C:0 46731 chr22 42422817 42422817 1 + G T LUSC 42422814 + 42422794 42422834 41 CAGGATATGGAGCCCCACCTCCCGGATACGGAGCCCCACCT CAGGATATGGAGCCCCACCTCCCTGATACGGAGCCCCACCT < 41bp 0.827167549723775 0.461204583226176 0.3374932 0.15300545 prediction 0.65433509944755 Functional Loss - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42422814 chr22:42422817 stopgain 0.000 0 24 hm5C_associated_SNPs_51379 0 0 0 0 1 exosome 0.500231643921092 0.500231643921093 0 0 hm5C_site_46731 DeepMRMD:0;iRNA_m5C:0 46732 chr8 24771447 24771447 1 + C A rs201628186 24771450 - 24771430 24771470 41 CTGCGCTTATAGGAGGAGGACACGGTGCTGGGCGAGCCGCG CTGCGCTTATAGGAGGAGGACACTGTGCTGGGCGAGCCGCG < 41bp 0.849348167697705 0.522227670469252 0.5883334 0.43858954 prediction 0.654240994456907 Functional Loss - NEFM ENSG00000104722 CDS Human protein_coding chr8:24771450 chr8:24771447 synonymous SNV . 0 24 hm5C_associated_SNPs_51380 0 0 1 0 0 exosome 0.500231643922385 0.500231650437294 0.1766668 0 hm5C_site_46732 DeepMRMD:0.1766668;iRNA_m5C:0 46733 chr2 103380882 103380882 1 + A C OV 103380878 + 103380858 103380898 41 CAACTCGACCTCCTATGACTCTGCAGTTAGTAAGTACCCTC CAACTCGACCTCCTATGACTCTGCCGTTAGTAAGTACCCTC < 41bp 0.883676001738608 0.556591486550253 0.30644023 0.299738 prediction 0.654169030376709 Functional Loss - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103380878 chr2:103380882 synonymous SNV . 0 25 hm5C_associated_SNPs_51381 0 0 1 0 2 cytosol 0.500231662199064 0.500231643885804 0 3.66265200391069e-08 hm5C_site_46733 DeepMRMD:0;iRNA_m5C:3.66265200391069e-08 46734 chrX 48547227 48547227 1 + A C rs782244198 48547223 + 48547203 48547243 41 AGGCCGAGGGGGCCCTCCACCACCACCCCCTCCAGCTACTG AGGCCGAGGGGGCCCTCCACCACCCCCCCCTCCAGCTACTG < 41bp 0.888300995370814 0.561217428090471 0.12962314 0.055194944 prediction 0.654167134560686 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48547223 chrX:48547227 synonymous SNV . 0 25 hm5C_associated_SNPs_51382 0 0 0 0 0 Endoplasmic reticulum 0.50023164370645 0.500231643921092 0 0 hm5C_site_46734 DeepMRMD:0;iRNA_m5C:0 46735 chr11 6806849 6806849 1 + G T UCEC 6806846 + 6806826 6806866 41 GGTGGCCTGTGCTGATACCTCCAGATATGAGCTCATGGTAT GGTGGCCTGTGCTGATACCTCCATATATGAGCTCATGGTAT < 41bp 0.827082452514833 0.471631300662768 0.31048802 0.027226895 prediction 0.654164905029666 Functional Loss - OR2AG1 ENSG00000170803 CDS Human other chr11:6806846 chr11:6806849 nonsynonymous SNV 0.509 0 24 hm5C_associated_SNPs_51383 0 0 0 0 0 unknown 0.500228898721785 0.500234637807729 0 0 hm5C_site_46735 DeepMRMD:0;iRNA_m5C:0 46736 chr11 193127 193127 1 + G T LUSC 193124 + 193104 193144 41 AGGGGAGCCGTGCCCTCCTGCTGGTGGCCCTCACCCTGTTC AGGGGAGCCGTGCCCTCCTGCTGTTGGCCCTCACCCTGTTC < 41bp 0.82707950383862 0.460005481695102 0.32380542 0.051606447 prediction 0.654159007677239 Functional Loss - SCGB1C1;SCGB1C2 ENSG00000188076 CDS Human protein_coding chr11:193124 chr11:193127 nonsynonymous SNV 0.847 1 24 hm5C_associated_SNPs_51384 0 0 0 0 1 unknown 0.500231643921058 0.500231643921093 0 0 hm5C_site_46736 DeepMRMD:0;iRNA_m5C:0 Intraocular pressure 46737 chr3 40192648 40192648 1 + G T COAD 40192645 + 40192625 40192665 41 ACCTGTACAGGAAGCACCGGCTGGAGAGTGGCGCGTGCTTC ACCTGTACAGGAAGCACCGGCTGTAGAGTGGCGCGTGCTTC < 41bp 0.835968741839074 0.508890927286018 0.6938341 0.39126018 prediction 0.654155629106112 Functional Loss - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40192645 chr3:40192648 stopgain 0.924 1 24 hm5C_associated_SNPs_51385 0 0 0 0 1 chromatin 0.500231464813457 0.500232543232049 0.3876682 0 hm5C_site_46737 DeepMRMD:0.3876682;iRNA_m5C:0 46738 chr11 58722369 58722369 1 + G T LUAD 58722366 + 58722346 58722386 41 GGAAACAGAGACTCCAAATCCAAGGTAACGAGTCTGAAGAA GGAAACAGAGACTCCAAATCCAATGTAACGAGTCTGAAGAA < 41bp 0.827027967232084 0.480151235797242 0.89114726 0.05721554 prediction 0.654055934464168 Functional Loss - GLYATL1 ENSG00000166840 CDS Human protein_coding chr11:58722366 chr11:58722369 nonsynonymous SNV 0.017 3 24 hm5C_associated_SNPs_51386 0 0 0 0 1 exosome 0.500231643849464 0.500231643511844 0.78229452 6.75238309710835e-10 hm5C_site_46738 DeepMRMD:0.78229452;iRNA_m5C:6.75238309710835e-10 46739 chr1 120056551 120056551 1 + G T UCEC 120056548 + 120056528 120056568 41 GTAGCCGGGCCCAACTCCTACAAGGAAATCATCCAGAATGG GTAGCCGGGCCCAACTCCTACAATGAAATCATCCAGAATGG < 41bp 0.827021411572984 0.459174791364851 0.15899372 0.01038155 prediction 0.654042823145968 Functional Loss - HSD3B1 ENSG00000203857 CDS Human protein_coding chr1:120056548 chr1:120056551 nonsynonymous SNV 0.345 1 24 hm5C_associated_SNPs_51387 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46739 DeepMRMD:0;iRNA_m5C:0 46740 chr22 50960982 50960982 1 + G T HNSC 50960979 + 50960959 50960999 41 GAGCCCGAGGGAGCAGACCCCAGGGAAGCCGCTGACCTTGG GAGCCCGAGGGAGCAGACCCCAGTGAAGCCGCTGACCTTGG < 41bp 0.82699888073265 0.459034848973881 0.89208555 0.57751215 prediction 0.653997761465301 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960979 chr22:50960982 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51388 0 0 1 0 3 Cytosol 0.500231643921139 0.500231643921278 0.6291468 0 hm5C_site_46740 DeepMRMD:0.6291468;iRNA_m5C:0 46741 chr19 19790235 19790235 1 + A C rs138984536 19790231 + 19790211 19790251 41 AGACGCCCCGTAAACAGAAACAACATGGGAAAGCCTCCATT AGACGCCCCGTAAACAGAAACAACCTGGGAAAGCCTCCATT < 41bp 0.826984547846988 0.457186679153414 0.16777283 0.05102253 prediction 0.653969095693976 Functional Loss - ZNF101 ENSG00000181896 CDS Human protein_coding chr19:19790231 chr19:19790235 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_51389 0 0 1 0 0 nucleolus 0.500231643921046 0.500231643921092 0 0 hm5C_site_46741 DeepMRMD:0;iRNA_m5C:0 46742 chr11 3681285 3681285 1 + G T HNSC 3681283 + 3681263 3681303 41 CCCCGGTGCCACCAGGTGTTCCGAGGTGTGCACGGCCTGCG CCCCGGTGCCACCAGGTGTTCCTAGGTGTGCACGGCCTGCG < 41bp 0.826976280749545 0.499289600201587 0.92356646 0.87070274 prediction 0.65395256149909 Functional Loss - ART1 ENSG00000129744 CDS Human protein_coding chr11:3681283 chr11:3681285 nonsynonymous SNV 0.571 4 23 hm5C_associated_SNPs_51390 0 0 0 0 0 exosome 0.500231643918775 0.500231643919673 0.10572744 0 hm5C_site_46742 DeepMRMD:0.10572744;iRNA_m5C:0 46743 chr11 63885557 63885557 1 + G T UCEC 63885554 + 63885534 63885574 41 GACTATATGGAGTCAGGGACCAAGAAGGATAACTCCATCCT GACTATATGGAGTCAGGGACCAATAAGGATAACTCCATCCT < 41bp 0.826975765971082 0.473111575260106 0.27272028 0.050295413 prediction 0.653951531942164 Functional Loss - FLRT1 ENSG00000126500 CDS Human protein_coding chr11:63885554 chr11:63885557 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51391 0 0 0 0 0 chromatin 0.500231643924364 0.500231646584998 0 0 hm5C_site_46743 DeepMRMD:0;iRNA_m5C:0 46744 chr2 228337193 228337193 1 + A C COAD 228337189 + 228337169 228337209 41 AGAAGCACCTGAAGATGCTGCGGGACATGACCGGCCTCCCG AGAAGCACCTGAAGATGCTGCGGGCCATGACCGGCCTCCCG < 41bp 0.832515879750642 0.505551857740397 0.88968205 0.8608668 prediction 0.653928044020491 Functional Loss - AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228337189 chr2:228337193 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51392 0 0 0 0 0 Cytosol 0.500231643881149 0.500231240366313 0.0576304999999999 8.07029672644788e-07 hm5C_site_46744 DeepMRMD:0.0576304999999999;iRNA_m5C:8.07029672644788e-07 Metabolic syndrome 46745 chr1 158724915 158724915 1 + A C HNSC 158724911 + 158724891 158724931 41 TTCCTGGAGATCTGCTATACCACAACCACCATCCCCAAGAT TTCCTGGAGATCTGCTATACCACACCCACCATCCCCAAGAT < 41bp 0.860056889733871 0.53313305259597 0.040049672 0.012481451 prediction 0.653847674275802 Functional Loss - OR6K6 ENSG00000180433 CDS Human protein_coding chr1:158724911 chr1:158724915 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_51393 0 0 0 0 0 unknown 0.500231643921097 0.500231615067572 0 5.77070482510322e-08 hm5C_site_46745 DeepMRMD:0;iRNA_m5C:5.77070482510322e-08 46746 chr2 233273445 233273445 1 + G T UCEC 233273442 + 233273422 233273462 41 GAGCCTGGAGACATGAAATACGAGATCCACCGAGACTCCAC GAGCCTGGAGACATGAAATACGATATCCACCGAGACTCCAC < 41bp 0.862198711861591 0.535300351531027 0.6334578 0.10388011 prediction 0.653796720661128 Functional Loss - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233273442 chr2:233273445 nonsynonymous SNV 0.013 1 24 hm5C_associated_SNPs_51394 0 0 0 0 1 exosome 0.500231643921092 0.500231643921086 0.2669156 1.19904086659517e-14 hm5C_site_46746 DeepMRMD:0.2669156;iRNA_m5C:1.19904086659517e-14 46747 chr11 1651231 1651231 1 + G T KIRC 1651228 + 1651208 1651248 41 GGGCTGTGGCTCCGGCTGTGCGGGCTGTGGGGGATGTGGCT GGGCTGTGGCTCCGGCTGTGCGGTCTGTGGGGGATGTGGCT < 41bp 0.859457902364453 0.532570590825184 0.9001362 0.77437 prediction 0.653774623078538 Functional Loss - KRTAP5-5 ENSG00000185940 CDS Human protein_coding chr11:1651228 chr11:1651231 nonsynonymous SNV 0.444 3 24 hm5C_associated_SNPs_51395 0 0 0 0 0 unknown 0.500231643284386 0.500231643869968 0.2515324 0 hm5C_site_46747 DeepMRMD:0.2515324;iRNA_m5C:0 46748 chr19 16964979 16964979 1 + A C OV 16964975 + 16964955 16964995 41 TCCGCCGGGTGCTGAAGAGCCAGGAGGTGTATGAAAACTTC TCCGCCGGGTGCTGAAGAGCCAGGCGGTGTATGAAAACTTC < 41bp 0.879079994456546 0.552217666457843 0.7603724 0.73764706 prediction 0.653724655997405 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16964975 chr19:16964979 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51396 0 0 1 0 2 Cytosol 0.500231643921093 0.500231643921102 0.0454506799999999 0 hm5C_site_46748 DeepMRMD:0.0454506799999999;iRNA_m5C:0 46749 chr7 149559197 149559197 1 + G T BRCA 149559194 + 149559174 149559214 41 TTTCGAGTGCTCCCTCCCAACAGGATACAGTGAGGAAGCTC TTTCGAGTGCTCCCTCCCAACAGTATACAGTGAGGAAGCTC < 41bp 0.861014918042337 0.534155996383365 0.35701007 0.12261292 prediction 0.653717843317944 Functional Loss - ZNF862 ENSG00000106479 CDS Human protein_coding chr7:149559194 chr7:149559197 nonsynonymous SNV 0.617 1 24 hm5C_associated_SNPs_51397 0 0 0 0 0 exosome 0.500231643400212 0.500231643907942 0 0 hm5C_site_46749 DeepMRMD:0;iRNA_m5C:0 46750 chr1 36766574 36766574 1 + A C COAD 36766570 + 36766550 36766590 41 CTACAAAGCAGAAGAGTACACTGAAGAGACAGAGGAAAGAG CTACAAAGCAGAAGAGTACACTGACGAGACAGAGGAAAGAG < 41bp 0.826853591868032 0.43635745888305 0.040442646 0.035885423 prediction 0.653707183736064 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36766570 chr1:36766574 nonsynonymous SNV 0.981 1 25 hm5C_associated_SNPs_51398 0 0 1 0 1 Nucleus 0.500231605860313 0.500230857770524 0 1.49617957689863e-06 hm5C_site_46750 DeepMRMD:0;iRNA_m5C:1.49617957689863e-06 46751 chr2 162696351 162696351 1 + G T UCEC 162696348 + 162696328 162696368 41 CTTGGAACCGAGGATGATGACGAGGAACACATTCCTCATGA CTTGGAACCGAGGATGATGACGATGAACACATTCCTCATGA < 41bp 0.826851071532393 0.49104917782862 0.68698156 0.06981209 prediction 0.653702143064786 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162696348 chr2:162696351 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_51399 0 0 0 3 2 exosome 0.500231722920339 0.500333991996688 0.37396312 0 hm5C_site_46751 DeepMRMD:0.37396312;iRNA_m5C:0 46752 chrX 103042816 103042816 1 + G T LIHC 103042813 + 103042793 103042833 41 GTGTACATTTACTTCAACACCTGGACCACCTGCCAGTCTAT GTGTACATTTACTTCAACACCTGTACCACCTGCCAGTCTAT < 41bp 0.864942747459751 0.53811326795488 0.18365732 0.044548064 prediction 0.653658959009742 Functional Loss - PLP1 ENSG00000123560 CDS Human protein_coding chrX:103042813 chrX:103042816 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51400 0 0 1 0 2 Endoplasmic reticulum 0.500309652076074 0.50023160379303 0 0.000156096566087616 hm5C_site_46752 DeepMRMD:0;iRNA_m5C:0.000156096566087616 46753 chr1 41228657 41228657 1 + G T SARC 41228654 + 41228634 41228674 41 CCAACAGGCCCAGAGTGGCACTGGACAGACCATGCAGGTGA CCAACAGGCCCAGAGTGGCACTGTACAGACCATGCAGGTGA < 41bp 0.826821019575568 0.4960516259989 0.38361958 0.089803934 prediction 0.653642039151135 Functional Loss - NFYC ENSG00000066136 CDS Human protein_coding chr1:41228654 chr1:41228657 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51401 0 0 1 0 2 Ribosome 0.500231643804814 0.500231643921092 0 0 hm5C_site_46753 DeepMRMD:0;iRNA_m5C:0 46754 chr19 16860445 16860445 1 + G T LUSC 16860443 + 16860423 16860463 41 CAGCAGCTCAGGCACGATGACAGCAAGCAGCACACCCCCCT CAGCAGCTCAGGCACGATGACATCAAGCAGCACACCCCCCT < 41bp 0.82896047256344 0.502171630597887 0.5545569 0.20781377 prediction 0.653577683931104 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16860443 chr19:16860445 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_51402 0 0 0 0 0 exosome 0.500231645548004 0.50023164383181 0.1091138 3.43238792943623e-09 hm5C_site_46754 DeepMRMD:0.1091138;iRNA_m5C:3.43238792943623e-09 46755 chr14 20345233 20345233 1 + G T UCEC 20345230 + 20345210 20345250 41 CTAAGCAGCTTTCTCACAGACAAGATTCTGTCTGTGTTTTA CTAAGCAGCTTTCTCACAGACAATATTCTGTCTGTGTTTTA < 41bp 0.832117208316533 0.505342540187123 0.09379649 0.024521053 prediction 0.65354933625882 Functional Loss - OR4K2 ENSG00000165762 CDS Human protein_coding chr14:20345230 chr14:20345233 nonsynonymous SNV 0.553 2 24 hm5C_associated_SNPs_51403 0 0 0 0 0 unknown 0.500231784150456 0.50023164383482 0 2.80631273552601e-07 hm5C_site_46755 DeepMRMD:0;iRNA_m5C:2.80631273552601e-07 46756 chr1 158435591 158435591 1 + G T GBM 158435588 + 158435568 158435608 41 TATACCTTTGTCATTGTACCCAAGATGCTGGTTGACCTGCT TATACCTTTGTCATTGTACCCAATATGCTGGTTGACCTGCT < 41bp 0.848409116378582 0.521642117267224 0.7774148 0.07137668 prediction 0.653533998222716 Functional Loss - OR10K1 ENSG00000173285 CDS Human protein_coding chr1:158435588 chr1:158435591 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_51404 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0.5548296 2.22044604925031e-16 hm5C_site_46756 DeepMRMD:0.5548296;iRNA_m5C:2.22044604925031e-16 46757 chr5 140554680 140554680 1 + G T UCEC 140554677 + 140554657 140554697 41 CCAGTATGAGGTGTGCCTGACTGGAGGCTCCGGGACAAATG CCAGTATGAGGTGTGCCTGACTGTAGGCTCCGGGACAAATG < 41bp 0.856569898126554 0.529806123150072 0.57465297 0.2503385 prediction 0.653527549952964 Functional Loss - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140554677 chr5:140554680 nonsynonymous SNV 0.585 2 24 hm5C_associated_SNPs_51405 0 0 0 0 0 exosome 0.500231643921093 0.500231643919007 0.14930594 4.17199608193641e-12 hm5C_site_46757 DeepMRMD:0.14930594;iRNA_m5C:4.17199608193641e-12 46758 chr12 56380883 56380883 1 + G T LUSC 56380880 + 56380860 56380900 41 GTTTTGTCAAAGGGCAGTTCCATGAGTACCAGGAGAGCACC GTTTTGTCAAAGGGCAGTTCCATTAGTACCAGGAGAGCACC < 41bp 0.826745955845439 0.479691187532629 0.3803754 0.25877464 prediction 0.653491911690877 Functional Loss - RAB5B ENSG00000111540 CDS Human protein_coding chr12:56380880 chr12:56380883 stopgain 1.000 1 24 hm5C_associated_SNPs_51406 0 0 1 0 1 Cytosol 0.500231641104333 0.500231643920849 0 0 hm5C_site_46758 DeepMRMD:0;iRNA_m5C:0 46759 chr2 31472333 31472333 1 + G T LUAD 31472330 + 31472310 31472350 41 GGGGAGAAGCAGAGGATCAGCCGGGGTAAGCAACCTGCCTG GGGGAGAAGCAGAGGATCAGCCGTGGTAAGCAACCTGCCTG < 41bp 0.873078337273613 0.546367516022725 0.9325205 0.7804549 prediction 0.653421642501774 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31472330 chr2:31472333 synonymous SNV . 0 24 hm5C_associated_SNPs_51407 0 0 0 0 2 exosome 0.500231643921093 0.500231638402801 0.3041312 1.10365838690285e-08 hm5C_site_46759 DeepMRMD:0.3041312;iRNA_m5C:1.10365838690285e-08 46760 chr7 152139667 152139667 1 + G T LUSC 152139664 + 152139644 152139684 41 AGCTAGAAGGAAGATGGCGCCTGGTGGACAACAAAGGCTTT AGCTAGAAGGAAGATGGCGCCTGTTGGACAACAAAGGCTTT < 41bp 0.826693710593969 0.472814644690822 0.35583052 0.11732757 prediction 0.653387421187939 Functional Loss - FABP5P3 ENSG00000241735 ncRNA_exonic Human transcribed_processed_pseudogene chr7:152139664 chr7:152139667 . . 0 24 hm5C_associated_SNPs_51408 0 0 0 0 0 unknown 0.500231643920654 0.500231643921098 0 0 hm5C_site_46760 DeepMRMD:0;iRNA_m5C:0 46761 chr22 42474823 42474823 1 + A C rs539029482 42474819 + 42474799 42474839 41 CTGTCTTCAGCAGCCAACTCCTGGAGCTGCCAAGTGAGGGG CTGTCTTCAGCAGCCAACTCCTGGCGCTGCCAAGTGAGGGG < 41bp 0.826686499258091 0.48159512570422 0.62507546 0.38565806 prediction 0.653372998516182 Functional Loss - FAM109B ENSG00000177096 UTR3 Human protein_coding chr22:42474819 chr22:42474823 . . 0 25 hm5C_associated_SNPs_51409 0 0 0 0 0 exosome 0.500231727643098 0.500232012223979 0.25015092 0 hm5C_site_46761 DeepMRMD:0.25015092;iRNA_m5C:0 46762 chr11 45246106 45246106 1 + G T LUAD 45246103 + 45246083 45246123 41 TGCAGAATATAGGCCAGACCCAGGGGGAGGGGGACTGGAAG TGCAGAATATAGGCCAGACCCAGTGGGAGGGGGACTGGAAG < 41bp 0.826660232666847 0.450543895183652 0.91487205 0.4864681 prediction 0.653320465333694 Functional Loss - PRDM11 ENSG00000019485 CDS Human protein_coding chr11:45246103 chr11:45246106 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51410 0 0 0 0 0 cytosol 0.500231432261744 0.500231643936672 0.8297441 0 hm5C_site_46762 DeepMRMD:0.8297441;iRNA_m5C:0 46763 chr1 22974271 22974271 1 + G T LUAD 22974268 + 22974248 22974288 41 TCTCCGGCTTCCTGCTCTTCCCCGACTAGGGCGGGCAGATG TCTCCGGCTTCCTGCTCTTCCCCTACTAGGGCGGGCAGATG < 41bp 0.82664085463908 0.479713316507576 0.27402577 0.28311598 prediction 0.653281709278159 Functional Loss - C1QC ENSG00000159189 CDS Human protein_coding chr1:22974268 chr1:22974271 nonsynonymous SNV 0.975 5 24 hm5C_associated_SNPs_51411 0 0 0 0 0 Cytosol 0.500231643925054 0.5002316439199 0 1.03066444268052e-11 hm5C_site_46763 DeepMRMD:0;iRNA_m5C:1.03066444268052e-11 46764 chr19 3121014 3121014 1 + G T LUAD 3121011 + 3120991 3121031 41 CCAGCGGGACGCCCAGGCGGCGCGGGAGTTCATCCTGAAGA CCAGCGGGACGCCCAGGCGGCGCTGGAGTTCATCCTGAAGA < 41bp 0.826624213485955 0.47555147571605 0.67478144 0.3655882 prediction 0.65324842697191 Functional Loss - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3121011 chr19:3121014 nonsynonymous SNV 0.647 2 24 hm5C_associated_SNPs_51412 0 0 0 0 1 Cytosol 0.500231643921093 0.500231643921088 0.34956288 9.54791801177635e-15 hm5C_site_46764 DeepMRMD:0.34956288;iRNA_m5C:9.54791801177635e-15 46765 chr3 14862495 14862495 1 + G T UCEC 14862492 + 14862472 14862512 41 AGCTCTCCCTCACTCCTGATCGAGAGCGACTCCCCGGACAA AGCTCTCCCTCACTCCTGATCGATAGCGACTCCCCGGACAA < 41bp 0.826604651742111 0.453510678400776 0.92957366 0.11043236 prediction 0.653209303484223 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14862492 chr3:14862495 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_51413 0 0 0 0 0 Cytosol 0.500231643921088 0.500231643932593 0.85914732 0 hm5C_site_46765 DeepMRMD:0.85914732;iRNA_m5C:0 46766 chr5 140590045 140590045 1 + G T UCEC 140590042 + 140590022 140590062 41 GCCCTCAGGTCGCTGGACTACGAGGCCCTGCAGGGGTTCCA GCCCTCAGGTCGCTGGACTACGATGCCCTGCAGGGGTTCCA < 41bp 0.862369942857571 0.535766280984593 0.55472964 0.20938155 prediction 0.653207323745956 Functional Loss - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140590042 chr5:140590045 nonsynonymous SNV 0.129 3 24 hm5C_associated_SNPs_51414 0 0 0 0 0 exosome 0.500231643921092 0.500231643917688 0.10945928 6.80810963160638e-12 hm5C_site_46766 DeepMRMD:0.10945928;iRNA_m5C:6.80810963160638e-12 46767 chr2 42557315 42557315 1 + G T GBM 42557312 + 42557292 42557332 41 AGCAGGCCAAAGCCACCCTTCTGGAGGACCAGCAAGACCCT AGCAGGCCAAAGCCACCCTTCTGTAGGACCAGCAAGACCCT < 41bp 0.845190638652518 0.51859229611132 0.7317127 0.13743132 prediction 0.653196685082395 Functional Loss - EML4 ENSG00000143924 CDS Human protein_coding chr2:42557312 chr2:42557315 stopgain 0.003 0 24 hm5C_associated_SNPs_51415 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0.4634254 0 hm5C_site_46767 DeepMRMD:0.4634254;iRNA_m5C:0 46768 chr17 4925855 4925855 1 + G T COAD 4925852 + 4925832 4925872 41 GTGGCAGTGAGGAGGGAGCCCGAGGGGCGGAGGTGGAGGAC GTGGCAGTGAGGAGGGAGCCCGATGGGCGGAGGTGGAGGAC < 41bp 0.871331438678678 0.544760083606511 0.91355157 0.89351416 prediction 0.653142710144336 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4925852 chr17:4925855 nonsynonymous SNV 0.977 2 24 hm5C_associated_SNPs_51416 0 0 1 0 0 Ribosome 0.500231643970898 0.500231643921092 0.0400748200000001 9.96118743046281e-11 hm5C_site_46768 DeepMRMD:0.0400748200000001;iRNA_m5C:9.96118743046281e-11 46769 chr1 175092666 175092666 1 + G T LUAD 175092663 + 175092643 175092683 41 ACCTCTGCTGACGGAGAGACCAGGGAGGTTCCGGTGGGGAA ACCTCTGCTGACGGAGAGACCAGTGAGGTTCCGGTGGGGAA < 41bp 0.826561754620548 0.448550321444163 0.9051597 0.33256063 prediction 0.653123509241097 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175092663 chr1:175092666 nonsynonymous SNV 0.417 0 24 hm5C_associated_SNPs_51417 0 0 0 0 0 exosome 0.500233108503034 0.500231645180396 0.8103194 2.92664527612452e-06 hm5C_site_46769 DeepMRMD:0.8103194;iRNA_m5C:2.92664527612452e-06 46770 chr7 106545637 106545637 1 + A C HNSC 106545633 + 106545613 106545653 41 GTTCTCCATGATGCTGATGACAGGAATGCCCCAGTTAACAA GTTCTCCATGATGCTGATGACAGGCATGCCCCAGTTAACAA < 41bp 0.826540298418122 0.464880096754794 0.40332693 0.24641776 prediction 0.653080596836243 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106545633 chr7:106545637 synonymous SNV . 0 25 hm5C_associated_SNPs_51418 0 0 1 0 1 Cytosol 0.500228620540901 0.500227863411909 0 1.51425798278204e-06 hm5C_site_46770 DeepMRMD:0;iRNA_m5C:1.51425798278204e-06 46771 chr5 99871318 99871318 1 + G T STAD 99871315 + 99871295 99871335 41 CTGTTGCTGCCTGAACTAAGCGGGCCCCTGGCAGTCCTGCT CTGTTGCTGCCTGAACTAAGCGGTCCCCTGGCAGTCCTGCT < 41bp 0.826539653647836 0.464277096576809 0.88139886 0.13876528 prediction 0.653079307295672 Functional Loss - FAM174A ENSG00000174132 CDS Human protein_coding chr5:99871315 chr5:99871318 synonymous SNV . 0 24 hm5C_associated_SNPs_51419 0 0 0 0 0 Cytosol 0.500231643920916 0.500231643921092 0.76279772 0 hm5C_site_46771 DeepMRMD:0.76279772;iRNA_m5C:0 46772 chr6 46797282 46797282 1 + A C STAD 46797278 + 46797258 46797298 41 ATGACAGCACAGGCAATGTTCGCAAGTTGGTGAAGGTGCAG ATGACAGCACAGGCAATGTTCGCACGTTGGTGAAGGTGCAG < 41bp 0.826538241346941 0.438594320353036 0.45921394 0.42341027 prediction 0.653076482693882 Functional Loss - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46797278 chr6:46797282 nonsynonymous SNV 0.905 2 25 hm5C_associated_SNPs_51420 0 0 0 0 1 cytosol 0.500233536072828 0.500244616719676 0 0 hm5C_site_46772 DeepMRMD:0;iRNA_m5C:0 46773 chr16 31309101 31309101 1 + G T LUAD 31309098 + 31309078 31309118 41 CAGTGTGATGCTGTTCTCTACGGGGAGCAGGGCCAACCCTG CAGTGTGATGCTGTTCTCTACGGTGAGCAGGGCCAACCCTG < 41bp 0.874683701423909 0.548150130368065 0.77350557 0.16000834 prediction 0.653067142111688 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309098 chr16:31309101 synonymous SNV . 0 24 hm5C_associated_SNPs_51421 0 0 0 0 2 Endoplasmic reticulum 0.500231578340064 0.500231417712895 0.54701114 3.21254339796795e-07 hm5C_site_46773 DeepMRMD:0.54701114;iRNA_m5C:3.21254339796795e-07 46774 chr19 44469153 44469153 1 + G T LUSC 44469150 + 44469130 44469170 41 TGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCC TGGTCTTCACTGAGGAGGAGCTGTGGCTGCTGGACCCTGCC < 41bp 0.826530561662318 0.451664270854608 0.8685063 0.51278037 prediction 0.653061123324636 Functional Loss - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44469150 chr19:44469153 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_51422 0 0 0 0 2 exosome 0.500231643921092 0.500231770534931 0.71145186 0 hm5C_site_46774 DeepMRMD:0.71145186;iRNA_m5C:0 46775 chr10 50901872 50901872 1 + G T GBM 50901869 + 50901849 50901889 41 ATCCTAGAGAAGATAGAAGACTGGAATGTGGTGGAACTCAT ATCCTAGAGAAGATAGAAGACTGTAATGTGGTGGAACTCAT < 41bp 0.843164262100816 0.516636293694056 0.36871657 0.29535395 prediction 0.653055936813519 Functional Loss - C10orf53 ENSG00000178645 CDS Human protein_coding chr10:50901869 chr10:50901872 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_51423 0 0 0 2 1 unknown 0.500231591451541 0.50023164392298 0 0 hm5C_site_46775 DeepMRMD:0;iRNA_m5C:0 46776 chr18 19209092 19209092 1 + G T STAD 19209089 + 19209069 19209109 41 TGGCAGAGGAAGAGGGGGTCCTAGGCGATAATGTCTCTCAA TGGCAGAGGAAGAGGGGGTCCTATGCGATAATGTCTCTCAA < 41bp 0.826502073612457 0.489917480004486 0.37203997 0.18684727 prediction 0.653004147224914 Functional Loss - SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209089 chr18:19209092 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51424 0 0 1 0 1 Ribosome 0.500231643921204 0.500231643921093 0 2.22266649529956e-13 hm5C_site_46776 DeepMRMD:0;iRNA_m5C:2.22266649529956e-13 46777 chrX 54837363 54837363 1 + G T PAAD 54837361 + 54837341 54837381 41 CTAATGGCCTCAATGGCCCGCAGGGCTTCAAGGGGTCCCAT CTAATGGCCTCAATGGCCCGCATGGCTTCAAGGGGTCCCAT < 41bp 0.836021406094318 0.509539854278481 0.716451 0.020446777 prediction 0.652963103631673 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54837361 chrX:54837363 nonsynonymous SNV 0.993 3 23 hm5C_associated_SNPs_51425 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.432902 0 hm5C_site_46777 DeepMRMD:0.432902;iRNA_m5C:0 46778 chr19 3730498 3730498 1 + G T UCEC 3730496 + 3730476 3730516 41 GGCTATGACGGCGACTCATCCAGTGGCTCCGGCCGCTCCTG GGCTATGACGGCGACTCATCCATTGGCTCCGGCCGCTCCTG < 41bp 0.826478356141369 0.498374317299098 0.89976895 0.18332067 prediction 0.652956712282738 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3730496 chr19:3730498 nonsynonymous SNV 0.753 2 23 hm5C_associated_SNPs_51426 0 0 0 0 0 Ribosome 0.50023164520483 0.500231643912717 0.7995379 2.5842268325249e-09 hm5C_site_46778 DeepMRMD:0.7995379;iRNA_m5C:2.5842268325249e-09 46779 chr15 76630252 76630252 1 + G T GBM 76630249 + 76630229 76630269 41 GAGTGCAGCCAGTACCTGGACGAGACGTGCACGTGCTTCGT GAGTGCAGCCAGTACCTGGACGATACGTGCACGTGCTTCGT < 41bp 0.826455315624749 0.465319095525238 0.37510264 0.050213903 prediction 0.652910631249498 Functional Loss - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630249 chr15:76630252 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51427 0 0 1 0 1 Cytosol 0.500231647157092 0.500231643934252 0 6.44567954566355e-09 hm5C_site_46779 DeepMRMD:0;iRNA_m5C:6.44567954566355e-09 46780 chr4 175898572 175898572 1 + G T UCEC 175898569 + 175898549 175898589 41 TGCTCACCTGCATTTTGTAACAAGAGGGGCATCTGCAACAA TGCTCACCTGCATTTTGTAACAATAGGGGCATCTGCAACAA < 41bp 0.826452320918591 0.486402257936279 0.7399082 0.23485488 prediction 0.652904641837182 Functional Loss - ADAM29 ENSG00000168594 CDS Human protein_coding chr4:175898569 chr4:175898572 nonsynonymous SNV 0.018 0 24 hm5C_associated_SNPs_51428 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.4798164 0 hm5C_site_46780 DeepMRMD:0.4798164;iRNA_m5C:0 46781 chr1 9030938 9030938 1 + G T OV 9030935 + 9030915 9030955 41 GTTGCCCCCAGGTTTGGAAGCTGGAGAATTCCTTACTGGAT GTTGCCCCCAGGTTTGGAAGCTGTAGAATTCCTTACTGGAT < 41bp 0.826441475384416 0.469431224846287 0.41934776 0.17626762 prediction 0.652882950768833 Functional Loss - CA6 ENSG00000131686 CDS Human protein_coding chr1:9030935 chr1:9030938 stopgain 0.012 1 24 hm5C_associated_SNPs_51429 0 0 0 0 1 exosome 0.500231643921117 0.500231643911188 0 1.985900333068e-11 hm5C_site_46781 DeepMRMD:0;iRNA_m5C:1.985900333068e-11 46782 chr19 4929473 4929473 1 + A C rs2123731 4929469 + 4929449 4929489 41 TGAGGACATGTGGGATGAGACGGAATTGGGGCTGTACAAGG TGAGGACATGTGGGATGAGACGGACTTGGGGCTGTACAAGG < 41bp 0.852924722356514 0.52648950931236 0.8514539 0.87124324 prediction 0.652870426088308 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4929469 chr19:4929473 . 0.028 0 25 hm5C_associated_SNPs_51430 0 0 1 0 1 chromatin 0.500231643921135 0.500231644263325 0 0 hm5C_site_46782 DeepMRMD:0;iRNA_m5C:0 46783 chr3 195453117 195453117 1 + G T CESC 195453114 + 195453094 195453134 41 ACCAAGTTACGTCAAAGTCTCAGGAGCAGCTCCGGTCTCCA ACCAAGTTACGTCAAAGTCTCAGTAGCAGCTCCGGTCTCCA < 41bp 0.875920081335296 0.549487581634479 0.93626875 0.15585244 prediction 0.652864999401635 Functional Loss - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195453114 chr3:195453117 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_51431 0 0 0 0 0 Nucleus 0.500231647899732 0.500231643923973 0.8725375 7.95151744448219e-09 hm5C_site_46783 DeepMRMD:0.8725375;iRNA_m5C:7.95151744448219e-09 46784 chr12 52309224 52309224 1 + G T LUAD 52309221 + 52309201 52309241 41 GCAAACCAGCCATTGCCCACCGCGACTTCAAGAGCCGCAAT GCAAACCAGCCATTGCCCACCGCTACTTCAAGAGCCGCAAT < 41bp 0.826427540108596 0.473658475160452 0.14081576 0.09729749 prediction 0.652855080217192 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309221 chr12:52309224 nonsynonymous SNV 0.994 5 24 hm5C_associated_SNPs_51432 0 0 0 0 1 Endoplasmic reticulum 0.500145407141162 0.499194486792157 0 0.000290814282324359 hm5C_site_46784 DeepMRMD:0;iRNA_m5C:0.000290814282324359 46785 chr1 161133967 161133967 1 + G T COAD 161133964 + 161133944 161133984 41 TTTCCCCCAGAAAGGATTTGCTGGGGGCAAGGTGTCTCTGC TTTCCCCCAGAAAGGATTTGCTGTGGGCAAGGTGTCTCTGC < 41bp 0.826394630270025 0.455974446554907 0.55528736 0.06718922 prediction 0.652789260540051 Functional Loss - USP21 ENSG00000143258 CDS Human protein_coding chr1:161133964 chr1:161133967 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51433 0 0 1 0 2 Cytosol 0.500231643921092 0.500231498429231 0.11057472 2.90983723560956e-07 hm5C_site_46785 DeepMRMD:0.11057472;iRNA_m5C:2.90983723560956e-07 46786 chr17 41368530 41368530 1 + G T SARC 41368527 + 41368507 41368547 41 ATGGTGACACAGCTGACCCTCGAGGTTCTGCACCTGTCCCT ATGGTGACACAGCTGACCCTCGATGTTCTGCACCTGTCCCT < 41bp 0.826393345290042 0.454619985205204 0.93104017 0.39671135 prediction 0.652786690580083 Functional Loss - TMEM106A ENSG00000184988 CDS Human protein_coding chr17:41368527 chr17:41368530 nonsynonymous SNV 0.058 3 24 hm5C_associated_SNPs_51434 0 0 1 0 2 chromatin 0.500231643921092 0.500231643921092 0.86208034 0 hm5C_site_46786 DeepMRMD:0.86208034;iRNA_m5C:0 46787 chr17 21731077 21731077 1 + G T LUAD 21731074 + 21731054 21731094 41 TCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCAGTCTT TCATCTTTGCAGGCAAGCAGCTGTAAGATGGCCGCAGTCTT < 41bp 0.826384255854348 0.481111537746607 0.8806428 0.8808998 prediction 0.652768511708696 Functional Loss - UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731074 chr17:21731077 stopgain 0.957 0 24 hm5C_associated_SNPs_51435 0 0 1 0 0 Ribosome 0.500231643939411 0.50023164392158 0 3.56621399077994e-11 hm5C_site_46787 DeepMRMD:0;iRNA_m5C:3.56621399077994e-11 46788 chr7 36324418 36324418 1 + G T ESCA 36324415 + 36324395 36324435 41 TGGCGGGCCCCAGCCCATACCTCGGGAGGTTCAAGGTACCC TGGCGGGCCCCAGCCCATACCTCTGGAGGTTCAAGGTACCC < 41bp 0.826377041056634 0.471603444248962 0.2520998 0.28873742 prediction 0.652754082113268 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36324415 chr7:36324418 nonsynonymous SNV 0.009 2 24 hm5C_associated_SNPs_51436 0 0 1 0 1 cytosol 0.500231645087566 0.500231644116836 0 1.94145965970449e-09 hm5C_site_46788 DeepMRMD:0;iRNA_m5C:1.94145965970449e-09 46789 chr1 196654324 196654324 1 + A C rs1061147 196654320 + 196654300 196654340 41 TCCTGCAACCCGGGGAAATACAGCAAAATGCACAAGTACTG TCCTGCAACCCGGGGAAATACAGCCAAATGCACAAGTACTG < 41bp 0.887908785402296 0.561533693091216 0.5140585 0.6903584 prediction 0.65275018462216 Functional Loss - CFH ENSG00000000971 CDS Human protein_coding chr1:196654320 chr1:196654324 synonymous SNV . 0 25 hm5C_associated_SNPs_51437 4 1 1 0 1 chromatin 0.500231643920553 0.50023164392109 0 0 hm5C_site_46789 DeepMRMD:0;iRNA_m5C:0 Macular degeneration Macular degeneration 46790 chr5 172343020 172343020 1 + G T rs145175370 172343017 + 172342997 172343037 41 AGTCAGAGGCTCTCACTACACTGGGTCCGTGTTCCCGCTAT AGTCAGAGGCTCTCACTACACTGTGTCCGTGTTCCCGCTAT < 41bp 0.826341618761844 0.491568745442558 0.4997602 0.104073316 prediction 0.652683237523688 Functional Loss - ERGIC1 ENSG00000113719 UTR3 Human protein_coding chr5:172343017 chr5:172343020 . . 0 24 hm5C_associated_SNPs_51438 0 0 0 0 0 Cytosol 0.500231643820745 0.500231650799509 0 0 hm5C_site_46790 DeepMRMD:0;iRNA_m5C:0 46791 chr16 27790273 27790273 1 + A C rs113705165 27790269 + 27790249 27790289 41 GGCCTGGGCTGACCCTGACTCAGAACAGGACAATGACGGGG GGCCTGGGCTGACCCTGACTCAGACCAGGACAATGACGGGG < 41bp 0.826335758043761 0.496126815272851 0.46527317 0.47004816 prediction 0.652671516087522 Functional Loss - KIAA0556 ENSG00000047578 UTR3 Human protein_coding chr16:27790269 chr16:27790273 . . 0 25 hm5C_associated_SNPs_51439 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_46791 DeepMRMD:0;iRNA_m5C:0 46792 chr17 59560592 59560592 1 + G T LUAD 59560589 + 59560569 59560609 41 ACGCACTTCACCGCCACCACCATGATGCCGCGGCTGCCCAC ACGCACTTCACCGCCACCACCATTATGCCGCGGCTGCCCAC < 41bp 0.826333756841465 0.461058593278539 0.26272547 0.07519111 prediction 0.652667513682931 Functional Loss - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59560589 chr17:59560592 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_51440 0 0 0 0 0 exosome 0.500231559440461 0.500231643921098 0 0 hm5C_site_46792 DeepMRMD:0;iRNA_m5C:0 46793 chr16 90001729 90001729 1 + C A UCEC 90001732 - 90001712 90001752 41 TTCTTGGCATCGAACATCTGCTGGGTGAGCTCGGGCACGGT TTCTTGGCATCGAACATCTGCTGTGTGAGCTCGGGCACGGT < 41bp 0.849368754053453 0.523047246369893 0.5261547 0.14052027 prediction 0.652643015367119 Functional Loss - TUBB3 ENSG00000198211;ENSG00000258947 CDS Human other chr16:90001732 chr16:90001729 synonymous SNV . 0 24 hm5C_associated_SNPs_51441 0 0 0 0 0 chromatin 0.500231628374169 0.500231648179896 0.0523094 0 hm5C_site_46793 DeepMRMD:0.0523094;iRNA_m5C:0 46794 chr13 25264494 25264494 1 + G T UCEC 25264491 + 25264471 25264511 41 TGCAGCAAGCTCTCGTCATCCGAGATTCCGAGAAGAAGACC TGCAGCAAGCTCTCGTCATCCGATATTCCGAGAAGAAGACC < 41bp 0.859504843734214 0.533196240611986 0.18500534 0.12570661 prediction 0.652617206244456 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264491 chr13:25264494 nonsynonymous SNV 0.238 5 24 hm5C_associated_SNPs_51442 0 0 0 0 1 Nucleus 0.500231646914785 0.500231643921093 0 5.98738392199039e-09 hm5C_site_46794 DeepMRMD:0;iRNA_m5C:5.98738392199039e-09 46795 chr11 4842915 4842915 1 + G T BRCA 4842912 + 4842892 4842932 41 TCTACTACCCTTGGTGTCTTCTGGTTTGAAGCCCGAGAAAT TCTACTACCCTTGGTGTCTTCTGTTTTGAAGCCCGAGAAAT < 41bp 0.849978393648492 0.523675098410974 0.34568125 0.13569823 prediction 0.652606590475036 Functional Loss - OR51F2 ENSG00000176925 CDS Human protein_coding chr11:4842912 chr11:4842915 nonsynonymous SNV 0.991 0 24 hm5C_associated_SNPs_51443 0 0 0 0 0 exosome 0.500231643921092 0.50023164392109 0 4.44089209850063e-15 hm5C_site_46795 DeepMRMD:0;iRNA_m5C:4.44089209850063e-15 46796 chr6 42903362 42903362 1 + A C STAD 42903358 + 42903338 42903378 41 AGACCATTTGCAAGAGGCTCCTGGATTATAGCCTGCACAAG AGACCATTTGCAAGAGGCTCCTGGCTTATAGCCTGCACAAG < 41bp 0.826298574385275 0.441255784114877 0.4412873 0.43295187 prediction 0.65259714877055 Functional Loss - CNPY3 ENSG00000137161 CDS Human protein_coding chr6:42903358 chr6:42903362 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51444 0 0 1 0 2 Ribosome 0.500230455896275 0.498849716716276 0 0.000460911792549368 hm5C_site_46796 DeepMRMD:0;iRNA_m5C:0.000460911792549368 46797 chr12 51863450 51863450 1 + A C LIHC 51863446 + 51863426 51863466 41 AAGCGGAAGGCCCCCTGGTACTGGAGCGACTACCGAGATGC AAGCGGAAGGCCCCCTGGTACTGGCGCGACTACCGAGATGC < 41bp 0.826294511369683 0.47517603561978 0.7003174 0.3310144 prediction 0.652589022739365 Functional Loss - SLC4A8 ENSG00000050438 CDS Human protein_coding chr12:51863446 chr12:51863450 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_51445 0 0 0 0 1 exosome 0.500231643922177 0.500231643921092 0.4006348 2.16848761169786e-12 hm5C_site_46797 DeepMRMD:0.4006348;iRNA_m5C:2.16848761169786e-12 46798 chr5 115298568 115298568 1 + G T UCEC 115298565 + 115298545 115298585 41 GCTAGCGGTGACGACCACCCCGAGCAACTGGCGACCCCCGG GCTAGCGGTGACGACCACCCCGATCAACTGGCGACCCCCGG < 41bp 0.826293861513321 0.464371970691774 0.7379669 0.2902617 prediction 0.652587723026641 Functional Loss - LVRN ENSG00000172901 CDS Human protein_coding chr5:115298565 chr5:115298568 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_51446 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921129 0.4759338 0 hm5C_site_46798 DeepMRMD:0.4759338;iRNA_m5C:0 46799 chr19 50203965 50203965 1 + G T LUSC 50203963 + 50203943 50203983 41 GTGGACAACACCACGGGCTCCGGGGGGTCCTGGCAGCCGCG GTGGACAACACCACGGGCTCCGTGGGGTCCTGGCAGCCGCG < 41bp 0.828851600066467 0.502559427929549 0.9223844 0.36833608 prediction 0.652584344273836 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50203963 chr19:50203965 synonymous SNV . 0 23 hm5C_associated_SNPs_51447 0 0 0 0 1 exosome 0.500231643921092 0.500231643921093 0.8447688 0 hm5C_site_46799 DeepMRMD:0.8447688;iRNA_m5C:0 46800 chr4 20482387 20482387 1 + G T LUSC 20482384 + 20482364 20482404 41 TGTATTGAAGATGGGGCATTCAGGGCTCTCCGGGACCTGGA TGTATTGAAGATGGGGCATTCAGTGCTCTCCGGGACCTGGA < 41bp 0.826292109887612 0.484478469004308 0.93449074 0.5409992 prediction 0.652584219775224 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20482384 chr4:20482387 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_51448 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.78698308 0 hm5C_site_46800 DeepMRMD:0.78698308;iRNA_m5C:0 46801 chr12 124104031 124104031 1 + G T UCEC 124104028 + 124104008 124104048 41 TTTGCCCTGCTGAGGATGCCCAAGATGCCAGAATTGAGAGG TTTGCCCTGCTGAGGATGCCCAATATGCCAGAATTGAGAGG < 41bp 0.826278194764092 0.472834689010732 0.38716197 0.18628907 prediction 0.652556389528185 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124104028 chr12:124104031 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51449 0 0 1 1 2 Nucleus 0.500231643071009 0.500231643921095 0 0 hm5C_site_46801 DeepMRMD:0;iRNA_m5C:0 46802 chr12 121659957 121659957 1 + A C BRCA 121659953 + 121659933 121659973 41 AGCTGTACTGCCGGCTCTGCCGGCACCCACAGCAACGGTAC AGCTGTACTGCCGGCTCTGCCGGCCCCCACAGCAACGGTAC < 41bp 0.870364088057174 0.544086433590875 0.49279553 0.42357215 prediction 0.652555308932597 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121659953 chr12:121659957 nonsynonymous SNV 0.584 0 25 hm5C_associated_SNPs_51450 0 0 1 0 2 Endoplasmic reticulum 0.500231643903389 0.500231643921825 0 0 hm5C_site_46802 DeepMRMD:0;iRNA_m5C:0 46803 chr1 167666491 167666491 1 + G T LUAD 167666488 + 167666468 167666508 41 GGGGATGAAGTGTTGCCATCCAAGAGCAAGGCCCCAGGATC GGGGATGAAGTGTTGCCATCCAATAGCAAGGCCCCAGGATC < 41bp 0.876431021531331 0.550156824339586 0.30950576 0.09423712 prediction 0.652548394383488 Functional Loss - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167666488 chr1:167666491 nonsynonymous SNV 0.564 2 24 hm5C_associated_SNPs_51451 0 0 0 0 0 chromatin 0.500231643918641 0.500231643921092 0 0 hm5C_site_46803 DeepMRMD:0;iRNA_m5C:0 46804 chr9 35853628 35853628 1 + G T LUAD 35853625 + 35853605 35853645 41 TTTATGCTTTTGTGGAGACCCGGGACAACTACTTCTACATT TTTATGCTTTTGTGGAGACCCGGTACAACTACTTCTACATT < 41bp 0.826268399161763 0.473493200484313 0.7536961 0.2707724 prediction 0.652536798323527 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35853625 chr9:35853628 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51452 0 0 0 0 0 cytosol 0.500231643921093 0.500231643921092 0.5073922 2.22044604925031e-16 hm5C_site_46804 DeepMRMD:0.5073922;iRNA_m5C:2.22044604925031e-16 46805 chr15 41863274 41863274 1 + G T UCEC 41863271 + 41863251 41863291 41 TGCGGGAGGCCCAGCTGAAGCAAGAGGATGGCTCCTTTGTG TGCGGGAGGCCCAGCTGAAGCAATAGGATGGCTCCTTTGTG < 41bp 0.826263942581993 0.457263055532797 0.8681611 0.35589963 prediction 0.652527885163985 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41863271 chr15:41863274 stopgain 0.989 0 24 hm5C_associated_SNPs_51453 0 0 1 0 2 Ribosome 0.500231644125607 0.500231643921092 0.7363222 4.090283667324e-10 hm5C_site_46805 DeepMRMD:0.7363222;iRNA_m5C:4.090283667324e-10 46806 chr7 143772016 143772016 1 + A C PAAD 143772012 + 143771992 143772032 41 TCCAGTCAGGAGAGGGGTGCCAGAAAGCCTTCTCCATCTGC TCCAGTCAGGAGAGGGGTGCCAGACAGCCTTCTCCATCTGC < 41bp 0.849456725696932 0.523194392533428 0.3092758 0.29076 prediction 0.652524666327007 Functional Loss - OR2A25 ENSG00000221933 CDS Human protein_coding chr7:143772012 chr7:143772016 nonsynonymous SNV 0.832 3 25 hm5C_associated_SNPs_51454 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_46806 DeepMRMD:0;iRNA_m5C:0 46807 chr11 59283148 59283148 1 + A C LUAD 59283144 + 59283124 59283164 41 GTGACCCTGCATTTCGTGCCCTGCATCTATGTCTATGCCCG GTGACCCTGCATTTCGTGCCCTGCCTCTATGTCTATGCCCG < 41bp 0.866050780447767 0.539830571975971 0.07454485 0.013966531 prediction 0.652440416943592 Functional Loss - OR4D9 ENSG00000172742 CDS Human protein_coding chr11:59283144 chr11:59283148 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51455 0 0 0 0 0 unknown 0.500231644906676 0.500231643921092 0 1.9711665633082e-09 hm5C_site_46807 DeepMRMD:0;iRNA_m5C:1.9711665633082e-09 46808 chr1 18661395 18661395 1 + G T LUAD 18661392 + 18661372 18661412 41 TCTGCCTCCCCCAGGCTGCCCGAGGTCCGGATCTCAGACAA TCTGCCTCCCCCAGGCTGCCCGATGTCCGGATCTCAGACAA < 41bp 0.826190314254585 0.462185853105447 0.3463934 0.12774661 prediction 0.652380628509171 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18661392 chr1:18661395 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51456 0 0 0 0 1 Nucleus 0.500231643121565 0.500231736215534 0 0 hm5C_site_46808 DeepMRMD:0;iRNA_m5C:0 46809 chr6 45480098 45480098 1 + G T COAD 45480096 + 45480076 45480116 41 CCACCCCGCTGTCTTCCACACGGGGCACTGGGCTTCCTGCC CCACCCCGCTGTCTTCCACACGTGGCACTGGGCTTCCTGCC < 41bp 0.832020597007201 0.505843997423172 0.9243989 0.27299172 prediction 0.652353199168057 Functional Loss - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45480096 chr6:45480098 synonymous SNV . 0 23 hm5C_associated_SNPs_51457 0 0 0 0 1 Cytosol 0.500231643921093 0.500231643020923 0.8487978 1.80033898899978e-09 hm5C_site_46809 DeepMRMD:0.8487978;iRNA_m5C:1.80033898899978e-09 46810 chr10 96306225 96306225 1 + A C LUSC 96306221 + 96306201 96306241 41 GGAAGAACAGCTTGAAGCTGCTGGACTAGAGAGAGAGCGGA GGAAGAACAGCTTGAAGCTGCTGGCCTAGAGAGAGAGCGGA < 41bp 0.826168900216015 0.456243856115736 0.29897457 0.19575912 prediction 0.65233780043203 Functional Loss - HELLS ENSG00000119969 CDS Human protein_coding chr10:96306221 chr10:96306225 synonymous SNV . 0 25 hm5C_associated_SNPs_51458 0 0 1 0 2 Cytosol 0.500231748939792 0.500240713568304 0 0 hm5C_site_46810 DeepMRMD:0;iRNA_m5C:0 46811 chr3 16327930 16327930 1 + G T UCEC 16327927 + 16327907 16327947 41 TCCGCTTGCTTGTTGCTGATCAAGACTTTTCCTTTAAAGCT TCCGCTTGCTTGTTGCTGATCAATACTTTTCCTTTAAAGCT < 41bp 0.826164894150342 0.462650488244083 0.16417545 0.058849096 prediction 0.652329788300684 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16327927 chr3:16327930 nonsynonymous SNV 0.022 2 24 hm5C_associated_SNPs_51459 0 0 1 0 2 Ribosome 0.500231873560925 0.500231649140192 0 4.48841465550132e-07 hm5C_site_46811 DeepMRMD:0;iRNA_m5C:4.48841465550132e-07 46812 chr19 8121383 8121383 1 + G T UCEC 8121380 + 8121360 8121400 41 ACCACAACACGCAGACCTTCCAAGGTGGGCAAGACCTCTGC ACCACAACACGCAGACCTTCCAATGTGGGCAAGACCTCTGC < 41bp 0.861103726506035 0.534940333898904 0.84260774 0.26404497 prediction 0.652326785214263 Functional Loss - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8121380 chr19:8121383 nonsynonymous SNV 0.038 0 24 hm5C_associated_SNPs_51460 0 0 0 0 1 Cytosol 0.500231640533834 0.500228644089257 0.68521548 5.99288915381635e-06 hm5C_site_46812 DeepMRMD:0.68521548;iRNA_m5C:5.99288915381635e-06 46813 chr19 55221917 55221917 1 + G T LUAD 55221914 + 55221894 55221934 41 ATCCGTGGCAGACCCTCCCTCTCGGTGCAGCCGGGCCCCAC ATCCGTGGCAGACCCTCCCTCTCTGTGCAGCCGGGCCCCAC < 41bp 0.829763512725181 0.503609903458189 0.35128617 0.04707113 prediction 0.652307218533984 Functional Loss - LILRP2 ENSG00000170858 ncRNA_exonic Human transcribed_processed_pseudogene chr19:55221914 chr19:55221917 . . 0 24 hm5C_associated_SNPs_51461 0 0 0 0 1 unknown 0.500231643921245 0.500231643921145 0 1.99174010617753e-13 hm5C_site_46813 DeepMRMD:0;iRNA_m5C:1.99174010617753e-13 46814 chr3 10191572 10191572 1 + G T KIRC 10191569 + 10191549 10191589 41 TCAGGTCGCTCTACGAAGATCTGGAAGACCACCCAAATGTG TCAGGTCGCTCTACGAAGATCTGTAAGACCACCCAAATGTG < 41bp 0.854965639564933 0.528818785757468 0.2580072 0.024376392 prediction 0.652293707614931 Functional Loss - VHL ENSG00000134086 CDS Human protein_coding chr3:10191569 chr3:10191572 stopgain 1.000 1 24 hm5C_associated_SNPs_51462 0 0 1 0 0 Ribosome 0.500231487383174 0.500231636720198 0 0 hm5C_site_46814 DeepMRMD:0;iRNA_m5C:0 46815 chr8 128428466 128428466 1 + C A rs182632506 128428469 - 128428449 128428489 41 CTTCTCCAGCTTCACGGCACCAGGGGGGACGGTGCAGGGTT CTTCTCCAGCTTCACGGCACCAGTGGGGACGGTGCAGGGTT < 41bp 0.826135638614796 0.47497392936895 0.91421103 0.3342854 prediction 0.652271277229592 Functional Loss - POU5F1B ENSG00000212993 CDS Human protein_coding chr8:128428469 chr8:128428466 nonsynonymous SNV 0.114 0 24 hm5C_associated_SNPs_51463 0 0 0 0 0 exosome 0.50023165115638 0.500231643917744 0.82842206 1.44772713817076e-08 hm5C_site_46815 DeepMRMD:0.82842206;iRNA_m5C:1.44772713817076e-08 46816 chr12 124798961 124798961 1 + A C LUAD 124798957 + 124798937 124798977 41 AAGCATGCCAGGAGCACTTTCCGGACCACCCTGCACTGCAG AAGCATGCCAGGAGCACTTTCCGGCCCACCCTGCACTGCAG < 41bp 0.826120383708385 0.467387772904734 0.8909221 0.88589126 prediction 0.652240767416771 Functional Loss - RFLNA ENSG00000178882 CDS Human protein_coding chr12:124798957 chr12:124798961 nonsynonymous SNV 0.980 4 25 hm5C_associated_SNPs_51464 0 0 0 0 0 unknown 0.500231643921104 0.50023164398238 0.0100616800000002 0 hm5C_site_46816 DeepMRMD:0.0100616800000002;iRNA_m5C:0 46817 chr5 40681505 40681505 1 + G T HNSC 40681502 + 40681482 40681522 41 CTACGTGGACAAGCGATTGGCGGGCCTCACGCTCTTTGCAG CTACGTGGACAAGCGATTGGCGGTCCTCACGCTCTTTGCAG < 41bp 0.826117714709469 0.453955464095418 0.86497045 0.31625837 prediction 0.652235429418938 Functional Loss - PTGER4 ENSG00000171522 CDS Human protein_coding chr5:40681502 chr5:40681505 nonsynonymous SNV 0.875 2 24 hm5C_associated_SNPs_51465 0 0 0 0 0 Cytosol 0.500229983692831 0.500231643935708 0.7299409 0 hm5C_site_46817 DeepMRMD:0.7299409;iRNA_m5C:0 46818 chr7 100198354 100198354 1 + G T STAD 100198351 + 100198331 100198371 41 GCCTGCGAGGAGTACCTCAGCCAGATCCACAGTTGCCAAAC GCCTGCGAGGAGTACCTCAGCCATATCCACAGTTGCCAAAC < 41bp 0.861702010308174 0.535585368061774 0.79286003 0.17578384 prediction 0.6522332844928 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100198351 chr7:100198354 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51466 0 0 0 0 0 exosome 0.500231643921093 0.500231643898928 0.58572006 4.43294290164431e-11 hm5C_site_46818 DeepMRMD:0.58572006;iRNA_m5C:4.43294290164431e-11 46819 chr22 37273779 37273779 1 + G T rs199618052 37273776 + 37273756 37273796 41 CGCTCATGGTGCGGCAGGCTCGTGGCCTCCCCTCCCAGAAG CGCTCATGGTGCGGCAGGCTCGTTGCCTCCCCTCCCAGAAG < 41bp 0.876448859203733 0.5503398718926 0.8965751 0.22778553 prediction 0.652217974622266 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37273776 chr22:37273779 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_51467 1 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.7931502 0 hm5C_site_46819 DeepMRMD:0.7931502;iRNA_m5C:0 Chronic granulomatous disease Chronic granulomatous disease 46820 chr3 49021773 49021773 1 + A C rs143241623 49021769 + 49021749 49021789 41 TGGCATGGGGGCTGTGTTTGCACAAGTTATTTTCATGTTAC TGGCATGGGGGCTGTGTTTGCACACGTTATTTTCATGTTAC < 41bp 0.83259578117262 0.506489176307636 0.12402129 0.21731687 prediction 0.652213209729969 Functional Loss - ARIH2 ENSG00000177479 UTR3 Human protein_coding chr3:49021769 chr3:49021773 . . 0 25 hm5C_associated_SNPs_51468 0 0 1 3 0 Cytosol 0.500231628860936 0.500231643890742 0 0 hm5C_site_46820 DeepMRMD:0;iRNA_m5C:0 46821 chr20 21687579 21687579 1 + G T HNSC 21687577 + 21687557 21687597 41 CCCCAGTCCCGTGTCGCCCACGGGCGCCAAGATGGGCAGCC CCCCAGTCCCGTGTCGCCCACGTGCGCCAAGATGGGCAGCC < 41bp 0.830293690841238 0.504193887123753 0.9079595 0.44110307 prediction 0.65219960743497 Functional Loss - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21687577 chr20:21687579 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_51469 0 0 0 0 0 unknown 0.500231804509879 0.500231643921094 0.815919 3.21177570317133e-07 hm5C_site_46821 DeepMRMD:0.815919;iRNA_m5C:3.21177570317133e-07 46822 chr15 99874160 99874160 1 + G T BRCA 99874157 + 99874137 99874177 41 ATTTGAAGGAGCTGCAGACACTAGACATTTCTACCAATCGT ATTTGAAGGAGCTGCAGACACTATACATTTCTACCAATCGT < 41bp 0.826083163136888 0.487211556702696 0.3687805 0.5212947 prediction 0.652166326273775 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99874157 chr15:99874160 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51470 0 0 1 0 1 Cytosol 0.500231643906519 0.50023164392225 0 0 hm5C_site_46822 DeepMRMD:0;iRNA_m5C:0 46823 chr1 16352670 16352670 1 + G T COAD 16352667 + 16352647 16352687 41 TTGGAGGACTACCTGGATATCAAGAACTTTGGGGCCAAGGT TTGGAGGACTACCTGGATATCAATAACTTTGGGGCCAAGGT < 41bp 0.86666536808352 0.540583819639884 0.9183861 0.7153647 prediction 0.652163096887271 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16352667 chr1:16352670 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51471 0 0 0 0 2 Endoplasmic reticulum 0.500231643921091 0.50023164392074 0.4060428 7.03215263797574e-13 hm5C_site_46823 DeepMRMD:0.4060428;iRNA_m5C:7.03215263797574e-13 46824 chr1 36752135 36752135 1 + G T STAD 36752132 + 36752112 36752152 41 ATCCATGGGGCCAATATAACCGAGGAGGCTATGGAAACTAC ATCCATGGGGCCAATATAACCGATGAGGCTATGGAAACTAC < 41bp 0.82607841109261 0.469143937995198 0.5634963 0.061386675 prediction 0.652156822185221 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36752132 chr1:36752135 stopgain 1.000 1 24 hm5C_associated_SNPs_51472 0 0 1 0 0 Nucleus 0.500231643921107 0.500231643921093 0.1269926 2.70894418008538e-14 hm5C_site_46824 DeepMRMD:0.1269926;iRNA_m5C:2.70894418008538e-14 46825 chr1 34667733 34667733 1 + G T LUAD 34667730 + 34667710 34667750 41 CAAGAACAACCCGAAGTACACAGGGAATGTTTTCACTCCAC CAAGAACAACCCGAAGTACACAGTGAATGTTTTCACTCCAC < 41bp 0.826072563672927 0.45353869791912 0.90364975 0.15363336 prediction 0.652145127345853 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34667730 chr1:34667733 nonsynonymous SNV 0.133 4 24 hm5C_associated_SNPs_51473 0 0 0 0 1 unknown 0.500231643921093 0.500231643864106 0.8072995 1.1397238708355e-10 hm5C_site_46825 DeepMRMD:0.8072995;iRNA_m5C:1.1397238708355e-10 46826 chr21 40880951 40880951 1 + A C UCEC 40880947 + 40880927 40880967 41 AGAAGAAGGAGAGACAGCCACAGAAGAGGTACGGTCGACCA AGAAGAAGGAGAGACAGCCACAGACGAGGTACGGTCGACCA < 41bp 0.826067952345343 0.455027921762576 0.38777417 0.2096256 prediction 0.652135904690687 Functional Loss - SH3BGR;WRB-SH3BGR ENSG00000185437 CDS Human protein_coding chr21:40880947 chr21:40880951 nonsynonymous SNV 0.923 0 25 hm5C_associated_SNPs_51474 0 0 1 0 2 unknown 0.500232925858263 0.500231518439419 0 2.81483768738156e-06 hm5C_site_46826 DeepMRMD:0;iRNA_m5C:2.81483768738156e-06 46827 chr2 131487498 131487498 1 + G T LUAD 131487495 + 131487475 131487515 41 ATCTGGGGGCAGGGCTATTCCCGGGCCAGGGGCACCCTGCT ATCTGGGGGCAGGGCTATTCCCGTGCCAGGGGCACCCTGCT < 41bp 0.870291995645345 0.544226458488539 0.9277731 0.9049103 prediction 0.652131074313612 Functional Loss - GPR148 ENSG00000173302 CDS Human protein_coding chr2:131487495 chr2:131487498 synonymous SNV . 0 24 hm5C_associated_SNPs_51475 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.0457256000000001 0 hm5C_site_46827 DeepMRMD:0.0457256000000001;iRNA_m5C:0 46828 chr4 1244826 1244826 1 + G T BLCA 1244823 + 1244803 1244843 41 ACTGAGAACGGAGAGGGATGCAGGCCAGCCAGGGATCCAGC ACTGAGAACGGAGAGGGATGCAGTCCAGCCAGGGATCCAGC < 41bp 0.845793775738937 0.519730664641809 0.92895234 0.91504085 prediction 0.652126222194257 Functional Loss - CTBP1-AS2 ENSG00000196810 ncRNA_exonic Human antisense chr4:1244823 chr4:1244826 . . 0 24 hm5C_associated_SNPs_51476 0 0 0 0 0 unknown 0.500231644264294 0.500234884611607 0.0278229800000001 0 hm5C_site_46828 DeepMRMD:0.0278229800000001;iRNA_m5C:0 46829 chr9 34506803 34506803 1 + G T UCEC 34506800 + 34506780 34506820 41 AACGTGGCCATTTACAACCTCAAGAAGCCCCACTCCCAGCC AACGTGGCCATTTACAACCTCAATAAGCCCCACTCCCAGCC < 41bp 0.826027594911739 0.457095472371979 0.15725502 0.123524755 prediction 0.652055189823478 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34506800 chr9:34506803 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51477 0 0 0 0 1 unknown 0.500231643921092 0.500231643921093 0 0 hm5C_site_46829 DeepMRMD:0;iRNA_m5C:0 46830 chr6 37446287 37446287 1 + G T SKCM 37446284 + 37446264 37446304 41 CCCATGGGCCTCTACATCGTCAGGACAGTGAATGGTGGGTG CCCATGGGCCTCTACATCGTCAGTACAGTGAATGGTGGGTG < 41bp 0.826021780181196 0.469200436654606 0.91318214 0.31736428 prediction 0.652043560362392 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37446284 chr6:37446287 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51478 0 0 1 0 1 Endoplasmic reticulum 0.500231643917397 0.500231643921095 0.82636428 0 hm5C_site_46830 DeepMRMD:0.82636428;iRNA_m5C:0 46831 chr14 24606982 24606982 1 + G T UCEC 24606979 + 24606959 24606999 41 CAGCGCTTGAAGCCTGAGATCAAGGATGTCATTGAGCAGCT CAGCGCTTGAAGCCTGAGATCAATGATGTCATTGAGCAGCT < 41bp 0.82600125344888 0.456401142832545 0.8977835 0.13187104 prediction 0.65200250689776 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24606979 chr14:24606982 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51479 0 0 1 0 2 Ribosome 0.500231644186497 0.500234287363247 0.795567 0 hm5C_site_46831 DeepMRMD:0.795567;iRNA_m5C:0 Multiple complex diseases 46832 chr17 14248368 14248368 1 + A C CESC 14248364 + 14248344 14248384 41 GGGACCTGATGCCCAGAACCCTGGACGGGCAGATCACCATG GGGACCTGATGCCCAGAACCCTGGCCGGGCAGATCACCATG < 41bp 0.880516924049478 0.554545642276763 0.74227595 0.5746816 prediction 0.651942563545431 Functional Loss - HS3ST3B1 ENSG00000125430 CDS Human protein_coding chr17:14248364 chr17:14248368 nonsynonymous SNV 0.962 0 25 hm5C_associated_SNPs_51480 0 0 0 0 1 Endoplasmic reticulum 0.500231643917049 0.500231643827723 0.3351887 1.78652204141372e-10 hm5C_site_46832 DeepMRMD:0.3351887;iRNA_m5C:1.78652204141372e-10 46833 chr19 52877610 52877610 1 + G T UCEC 52877607 + 52877587 52877627 41 TTGGAGCAAAGGAGAGATCCCCGGAATCTGCAGAGTGAAGT TTGGAGCAAAGGAGAGATCCCCGTAATCTGCAGAGTGAAGT < 41bp 0.82596642602446 0.480930288388377 0.49662858 0.20353344 prediction 0.65193285204892 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877607 chr19:52877610 synonymous SNV . 0 24 hm5C_associated_SNPs_51481 0 0 1 0 3 Exosome 0.500231643921491 0.500231643921092 0 7.98028310100563e-13 hm5C_site_46833 DeepMRMD:0;iRNA_m5C:7.98028310100563e-13 46834 chr8 145065972 145065972 1 + G T STAD 145065969 + 145065949 145065989 41 ATCCGACAGGCCTTCATCCGCAAGGTGGGTAGGGGCATCTC ATCCGACAGGCCTTCATCCGCAATGTGGGTAGGGGCATCTC < 41bp 0.871540666184742 0.545596240675314 0.8617134 0.40553677 prediction 0.651888851018857 Functional Loss - GRINA ENSG00000178719 CDS Human protein_coding chr8:145065969 chr8:145065972 nonsynonymous SNV 0.954 4 24 hm5C_associated_SNPs_51482 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643914461 0.7234268 1.32620581183573e-11 hm5C_site_46834 DeepMRMD:0.7234268;iRNA_m5C:1.32620581183573e-11 46835 chr14 74824821 74824821 1 + G T LUSC 74824818 + 74824798 74824838 41 AATTGGCGGCGAAAGGCCCTCCGGAGGAACCCCAGCTTCAA AATTGGCGGCGAAAGGCCCTCCGTAGGAACCCCAGCTTCAA < 41bp 0.868287348879943 0.542353480376428 0.89473724 0.13899526 prediction 0.651867737007029 Functional Loss - VRTN ENSG00000133980 CDS Human protein_coding chr14:74824818 chr14:74824821 synonymous SNV . 0 24 hm5C_associated_SNPs_51483 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.78947448 0 hm5C_site_46835 DeepMRMD:0.78947448;iRNA_m5C:0 46836 chr15 20496613 20496613 1 + A C COAD 20496609 + 20496589 20496629 41 ATTTTCAGCCTTCTACTAGTCGAAAGTGGCCTCATGAAGGG ATTTTCAGCCTTCTACTAGTCGAACGTGGCCTCATGAAGGG < 41bp 0.837079460814 0.511149968962352 0.18060145 0.11351937 prediction 0.651858983703297 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20496609 chr15:20496613 . . 0 25 hm5C_associated_SNPs_51484 0 0 0 0 1 unknown 0.500231643921093 0.50023164392564 0 0 hm5C_site_46836 DeepMRMD:0;iRNA_m5C:0 46837 chr17 45351806 45351806 1 + G T MESO 45351803 + 45351783 45351823 41 AGGGCCCAACATCTGTACCACGCGAGGTGTGAGCTCCTGCC AGGGCCCAACATCTGTACCACGCTAGGTGTGAGCTCCTGCC < 41bp 0.868004757822203 0.54208421488723 0.4771918 0.36168575 prediction 0.651841085869946 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45351803 chr17:45351806 nonsynonymous SNV 0.984 3 24 hm5C_associated_SNPs_51485 0 0 0 0 2 cytosol 0.500231643187492 0.500231643925448 0 0 hm5C_site_46837 DeepMRMD:0;iRNA_m5C:0 46838 chr4 69978204 69978204 1 + G T UCEC 69978201 + 69978181 69978221 41 AGAGAATGTTATGAAATTATCAAGAATTCAACATGATCAAC AGAGAATGTTATGAAATTATCAATAATTCAACATGATCAAC < 41bp 0.834579842684898 0.50866392484644 0.17095834 0.057466835 prediction 0.651831835676916 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69978201 chr4:69978204 nonsynonymous SNV 0.685 1 24 hm5C_associated_SNPs_51486 0 0 0 0 1 Endoplasmic reticulum 0.500231641505556 0.500230056243365 0 3.17052438125742e-06 hm5C_site_46838 DeepMRMD:0;iRNA_m5C:3.17052438125742e-06 46839 chr16 23226587 23226587 1 + G T LUSC 23226584 + 23226564 23226604 41 GGAAACAGGCTCCCCCATGTCCAGAAGCTCCCCGTAGCCCA GGAAACAGGCTCCCCCATGTCCATAAGCTCCCCGTAGCCCA < 41bp 0.825893889229435 0.461521896137298 0.55107296 0.18372014 prediction 0.651787778458869 Functional Loss - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23226584 chr16:23226587 stopgain 0.032 0 24 hm5C_associated_SNPs_51487 0 0 0 0 0 exosome 0.500233072820395 0.500231643921179 0.10214592 2.85779843189893e-06 hm5C_site_46839 DeepMRMD:0.10214592;iRNA_m5C:2.85779843189893e-06 46840 chr2 211460281 211460281 1 + G T LUAD 211460278 + 211460258 211460298 41 GGCTGGAGAATTTGATTACTCAGGATCTCAAGCTGTAAAAG GGCTGGAGAATTTGATTACTCAGTATCTCAAGCTGTAAAAG < 41bp 0.852318198224032 0.526439421413831 0.86666757 0.21586728 prediction 0.651757553620403 Functional Loss - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211460278 chr2:211460281 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_51488 0 0 1 0 2 Nucleus 0.500231643921097 0.500231643927598 0.73333514 0 hm5C_site_46840 DeepMRMD:0.73333514;iRNA_m5C:0 46841 chr5 175110705 175110705 1 + G T LUSC 175110702 + 175110682 175110722 41 TGTCCTTTCTGTCTATCCACCTGGGGTGGAACAGCAGGAAC TGTCCTTTCTGTCTATCCACCTGTGGTGGAACAGCAGGAAC < 41bp 0.865834586127226 0.53998577541261 0.2646034 0.053215086 prediction 0.651697621429232 Functional Loss - HRH2 ENSG00000113749 CDS Human protein_coding chr5:175110702 chr5:175110705 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51489 0 0 0 0 0 nucleus 0.500231643924386 0.500231644296423 0 0 hm5C_site_46841 DeepMRMD:0;iRNA_m5C:0 46842 chr11 117038152 117038152 1 + G T LUAD 117038149 + 117038129 117038169 41 TGCCCCAGGGTTTGTTACCTCGAGGTGAGAAACCCAATCCT TGCCCCAGGGTTTGTTACCTCGATGTGAGAAACCCAATCCT < 41bp 0.825845539041423 0.474791123820368 0.89592296 0.65260875 prediction 0.651691078082846 Functional Loss - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117038149 chr11:117038152 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51490 0 0 1 0 0 Ribosome 0.500231643916749 0.500231634311783 0.48662842 1.92099334217488e-08 hm5C_site_46842 DeepMRMD:0.48662842;iRNA_m5C:1.92099334217488e-08 46843 chr6 134210826 134210826 1 + G T UCEC 134210823 + 134210803 134210843 41 GCCCGCATGCGAGTGCTGAGCAAGGCCTTCTCCAGACTCAA GCCCGCATGCGAGTGCTGAGCAATGCCTTCTCCAGACTCAA < 41bp 0.825821028676615 0.458558688580696 0.8910783 0.20278075 prediction 0.65164205735323 Functional Loss - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134210823 chr6:134210826 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51491 0 0 0 0 0 exosome 0.5002316388443 0.500231643867209 0.7821566 0 hm5C_site_46843 DeepMRMD:0.7821566;iRNA_m5C:0 46844 chr17 65026991 65026991 1 + G T UCEC 65026988 + 65026968 65027008 41 ACGCTGTCCAGGGAGCCCCTCAAGGTGACCACCGCAGCCAG ACGCTGTCCAGGGAGCCCCTCAATGTGACCACCGCAGCCAG < 41bp 0.825774967639405 0.454701397898408 0.9062152 0.4346161 prediction 0.65154993527881 Functional Loss - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65026988 chr17:65026991 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_51492 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.8124304 0 hm5C_site_46844 DeepMRMD:0.8124304;iRNA_m5C:0 46845 chr8 143809137 143809137 1 + G T rs200783896 143809134 + 143809114 143809154 41 TCGAGGTGCGCACCCGCCTGCTGGGCTGGGACGACCGCGCG TCGAGGTGCGCACCCGCCTGCTGTGCTGGGACGACCGCGCG < 41bp 0.825771953870086 0.484926234929816 0.15989962 0.09462488 prediction 0.651543907740173 Functional Loss - THEM6 ENSG00000130193 CDS Human protein_coding chr8:143809134 chr8:143809137 nonsynonymous SNV 0.986 0 24 hm5C_associated_SNPs_51493 0 0 1 0 0 Ribosome 0.50023151267366 0.500231643730465 0 0 hm5C_site_46845 DeepMRMD:0;iRNA_m5C:0 46846 chr16 67645270 67645270 1 + G T UCEC 67645267 + 67645247 67645287 41 CCAATGGAGAGGTGGAGACACTAGAACAAGGGGAACTTCCA CCAATGGAGAGGTGGAGACACTATAACAAGGGGAACTTCCA < 41bp 0.825715940757205 0.494679266555737 0.90352976 0.9325894 prediction 0.651431881514411 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67645267 chr16:67645270 stopgain 1.000 1 24 hm5C_associated_SNPs_51494 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643895198 0 5.17885734296897e-11 hm5C_site_46846 DeepMRMD:0;iRNA_m5C:5.17885734296897e-11 46847 chr17 27225646 27225646 1 + C A UCEC 27225649 - 27225629 27225669 41 GAGGCTGGCAGGGCTTGGGCCTGGGGAGGATGCTGAACCCG GAGGCTGGCAGGGCTTGGGCCTGTGGAGGATGCTGAACCCG < 41bp 0.875866866580307 0.550160056328817 0.8619056 0.681674 prediction 0.65141362050298 Functional Loss - DHRS13 ENSG00000167536 CDS Human protein_coding chr17:27225649 chr17:27225646 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51495 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921093 0.3604632 0 hm5C_site_46847 DeepMRMD:0.3604632;iRNA_m5C:0 46848 chr2 219735837 219735837 1 + G T LIHC 219735834 + 219735814 219735854 41 GGCGGCAGGCCGAGTTGTGCCAGGCTGAGCCGGAAGTGGTG GGCGGCAGGCCGAGTTGTGCCAGTCTGAGCCGGAAGTGGTG < 41bp 0.825706607035074 0.476017843063875 0.7468159 0.59578323 prediction 0.651413214070148 Functional Loss - WNT6 ENSG00000115596 CDS Human protein_coding chr2:219735834 chr2:219735837 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_51496 0 0 0 0 1 exosome 0.500231643921297 0.500231643921088 0.30206534 4.17665901863984e-13 hm5C_site_46848 DeepMRMD:0.30206534;iRNA_m5C:4.17665901863984e-13 46849 chr7 2565099 2565099 1 + G T SARC 2565097 + 2565077 2565117 41 ACGTCAACCTGCGGGCCCTGCTGCGGCTGCTGGCCAGCTAC ACGTCAACCTGCGGGCCCTGCTTCGGCTGCTGGCCAGCTAC < 41bp 0.82601616084153 0.500339128756997 0.663304 0.13001028 prediction 0.651354064169066 Functional Loss - LFNG ENSG00000106003 CDS Human protein_coding chr7:2565097 chr7:2565099 synonymous SNV . 0 23 hm5C_associated_SNPs_51497 0 0 0 0 1 Ribosome 0.500231643686777 0.500231643920961 0.326608 0 hm5C_site_46849 DeepMRMD:0.326608;iRNA_m5C:0 46850 chr20 36030925 36030925 1 + G T OV 36030922 + 36030902 36030942 41 ACATCCTGGTGGGAGAGAACCTGGTGTGCAAAGTGGCGGAC ACATCCTGGTGGGAGAGAACCTGTTGTGCAAAGTGGCGGAC < 41bp 0.825663986409822 0.459933487379397 0.89331347 0.3470236 prediction 0.651327972819645 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36030922 chr20:36030925 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_51498 0 0 1 0 2 Ribosome 0.500231577916896 0.500231646971628 0.78662694 0 hm5C_site_46850 DeepMRMD:0.78662694;iRNA_m5C:0 46851 chr19 3941137 3941137 1 + A C STAD 3941133 + 3941113 3941153 41 GCCACGTGTGGCCCATGTACCAGAAGTATAGGCAGGAGATG GCCACGTGTGGCCCATGTACCAGACGTATAGGCAGGAGATG < 41bp 0.825657718543942 0.455746740799589 0.8564548 0.71194816 prediction 0.651315437087885 Functional Loss - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3941133 chr19:3941137 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_51499 0 0 0 0 2 exosome 0.50023185025263 0.500317966683794 0.28901328 0 hm5C_site_46851 DeepMRMD:0.28901328;iRNA_m5C:0 46852 chr6 74072850 74072850 1 + G T LUAD 74072847 + 74072827 74072867 41 GAGAACGCATCCCGCACGTCCAGGGTATGTCCCAAATCTTG GAGAACGCATCCCGCACGTCCAGTGTATGTCCCAAATCTTG < 41bp 0.87465311765003 0.549007088308445 0.8670406 0.3445634 prediction 0.65129205868317 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072847 chr6:74072850 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51500 0 0 0 0 1 unknown 0.50023164391857 0.500263192653599 0.7340812 0 hm5C_site_46852 DeepMRMD:0.7340812;iRNA_m5C:0 46853 chr7 98985783 98985783 1 + G T OV 98985780 + 98985760 98985800 41 CTGGTCATCCTGCGGATCAACCGGGCTGCCCGCTGCGTGCG CTGGTCATCCTGCGGATCAACCGTGCTGCCCGCTGCGTGCG < 41bp 0.880411288399538 0.554767894309127 0.9324287 0.2855326 prediction 0.651286788180821 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98985780 chr7:98985783 synonymous SNV . 0 24 hm5C_associated_SNPs_51501 0 0 1 0 0 Cytosol 0.500231643882954 0.500231631863232 0.8648574 2.40394437689417e-08 hm5C_site_46853 DeepMRMD:0.8648574;iRNA_m5C:2.40394437689417e-08 46854 chrX 153171744 153171744 1 + G T LUAD 153171741 + 153171721 153171761 41 GCAGCCCCGGTGAGGGAGCCCACGTGTCAGCAGCTGTGGCC GCAGCCCCGGTGAGGGAGCCCACTTGTCAGCAGCTGTGGCC < 41bp 0.825638408624328 0.460492973513934 0.30540362 0.13343498 prediction 0.651276817248655 Functional Loss - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153171741 chrX:153171744 nonsynonymous SNV 0.088 1 24 hm5C_associated_SNPs_51502 0 0 0 0 0 exosome 0.500231637297683 0.500231643921486 0 0 hm5C_site_46854 DeepMRMD:0;iRNA_m5C:0 46855 chr1 25678175 25678175 1 + G T UCEC 25678172 + 25678152 25678192 41 ATAGTTACAGTGAAGGTTGTCTGGGTCAAACAGGTAAATAG ATAGTTACAGTGAAGGTTGTCTGTGTCAAACAGGTAAATAG < 41bp 0.85175905188318 0.526128013909769 0.4934941 0.08933428 prediction 0.651262075946824 Functional Loss - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25678172 chr1:25678175 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51503 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_46855 DeepMRMD:0;iRNA_m5C:0 46856 chrX 152225562 152225562 1 + G T LUAD 152225559 + 152225539 152225579 41 TGCAGGCACCTGGGCAGATACAGGGTGATTGGCAGGATGTT TGCAGGCACCTGGGCAGATACAGTGTGATTGGCAGGATGTT < 41bp 0.825628535803748 0.451363511636408 0.91219187 0.17363587 prediction 0.651257071607496 Functional Loss - PNMA3 ENSG00000183837 CDS Human protein_coding chrX:152225559 chrX:152225562 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_51504 0 0 0 0 0 exosome 0.500231643921093 0.500231646318123 0.82438374 0 hm5C_site_46856 DeepMRMD:0.82438374;iRNA_m5C:0 46857 chr16 31308949 31308949 1 + G T SKCM 31308946 + 31308926 31308966 41 ACGAGCAGACCCGAGGGGGCCAGGTGTCCGTGTGCCCCTTG ACGAGCAGACCCGAGGGGGCCAGTTGTCCGTGTGCCCCTTG < 41bp 0.825626403499433 0.458536123238256 0.9106181 0.2993884 prediction 0.651252806998865 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31308946 chr16:31308949 nonsynonymous SNV 0.961 3 24 hm5C_associated_SNPs_51505 0 0 0 0 1 Endoplasmic reticulum 0.500231649069501 0.500239684830124 0.8212362 0 hm5C_site_46857 DeepMRMD:0.8212362;iRNA_m5C:0 46858 chr3 186394975 186394975 1 + A C rs145482557 186394971 + 186394951 186394991 41 ATCATCATCCCCACAAGCCACACGAACATGGACCCCCACCT ATCATCATCCCCACAAGCCACACGCACATGGACCCCCACCT < 41bp 0.825624527177561 0.448598209875946 0.02422914 0.011106491 prediction 0.651249054355121 Functional Loss - HRG ENSG00000113905 CDS Human protein_coding chr3:186394971 chr3:186394975 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_51506 0 0 0 0 0 exosome 0.50023164283359 0.500231642071317 0 1.52454537882818e-09 hm5C_site_46858 DeepMRMD:0;iRNA_m5C:1.52454537882818e-09 46859 chr11 94278557 94278557 1 + G T PAAD 94278554 + 94278534 94278574 41 CTTTCGAGAACTCGCAGCACCTGGATTATATCACCGAGAAG CTTTCGAGAACTCGCAGCACCTGTATTATATCACCGAGAAG < 41bp 0.860034443972921 0.534414509536775 0.49427825 0.16410768 prediction 0.651239868872293 Functional Loss - FUT4 ENSG00000196371 CDS Human protein_coding chr11:94278554 chr11:94278557 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_51507 0 0 1 0 0 Endoplasmic reticulum 0.500231644502054 0.500231643756778 0 1.490552126171e-09 hm5C_site_46859 DeepMRMD:0;iRNA_m5C:1.490552126171e-09 46860 chr1 156142717 156142717 1 + G T SARC 156142714 + 156142694 156142734 41 GACGCCCCTGCTGGTGAAATCTGGCGTGGAGTATACACGGC GACGCCCCTGCTGGTGAAATCTGTCGTGGAGTATACACGGC < 41bp 0.825600241001117 0.453013134440941 0.7454902 0.1540153 prediction 0.651200482002234 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142714 chr1:156142717 nonsynonymous SNV 0.906 1 24 hm5C_associated_SNPs_51508 0 0 0 0 1 exosome 0.500231642443858 0.500231643945512 0.4909804 0 hm5C_site_46860 DeepMRMD:0.4909804;iRNA_m5C:0 46861 chr10 118957067 118957067 1 + G T LUAD 118957064 + 118957044 118957084 41 GGCCCTGGGAAAGCTCTTCCCTGGCCTCTGCTTCCTCTGCT GGCCCTGGGAAAGCTCTTCCCTGTCCTCTGCTTCCTCTGCT < 41bp 0.825594675530125 0.469833285201544 0.23436877 0.10824594 prediction 0.65118935106025 Functional Loss - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118957064 chr10:118957067 nonsynonymous SNV 0.078 1 24 hm5C_associated_SNPs_51509 0 0 0 0 0 unknown 0.500231642019507 0.500231641003884 0 2.03124606024119e-09 hm5C_site_46861 DeepMRMD:0;iRNA_m5C:2.03124606024119e-09 46862 chr2 216965047 216965047 1 + G T TGCT 216965044 + 216965024 216965064 41 TCATGGCCATGGCTTCTTCCCTCGGCCTCTACGCTGCTGTG TCATGGCCATGGCTTCTTCCCTCTGCCTCTACGCTGCTGTG < 41bp 0.825571783102496 0.46032992753247 0.7086709 0.26114926 prediction 0.651143566204993 Functional Loss - TMEM169 ENSG00000163449 CDS Human protein_coding chr2:216965044 chr2:216965047 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_51510 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921093 0.4173418 0 hm5C_site_46862 DeepMRMD:0.4173418;iRNA_m5C:0 46863 chr11 75507405 75507405 1 + G T UCEC 75507402 + 75507382 75507422 41 ACACACAACCTGCTGACCACCAGGAACTATATCTTTGGATA ACACACAACCTGCTGACCACCAGTAACTATATCTTTGGATA < 41bp 0.867441786489497 0.541873800112896 0.8647758 0.114949405 prediction 0.651135972753203 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75507402 chr11:75507405 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_51511 0 0 0 0 1 Ribosome 0.500231643917333 0.500231644551396 0.7295516 0 hm5C_site_46863 DeepMRMD:0.7295516;iRNA_m5C:0 46864 chr19 49110400 49110400 1 + G T HNSC 49110397 + 49110377 49110417 41 TTCACAGGCCACGGGGTCGCCCCGGGCACTGGTCCGGTCAT TTCACAGGCCACGGGGTCGCCCCTGGCACTGGTCCGGTCAT < 41bp 0.867571267181319 0.542016964652501 0.88285375 0.40501463 prediction 0.651108605057636 Functional Loss - SPACA4 ENSG00000177202 CDS Human protein_coding chr19:49110397 chr19:49110400 synonymous SNV . 0 24 hm5C_associated_SNPs_51512 0 0 0 0 0 unknown 0.500231621578622 0.500231643112177 0.7657075 0 hm5C_site_46864 DeepMRMD:0.7657075;iRNA_m5C:0 46865 chr1 28879574 28879574 1 + G T rs138696611 28879571 + 28879551 28879591 41 TTGGCGCCCGCGCGGGCCTTCGAGCCCCGCCCGCAGAGCCC TTGGCGCCCGCGCGGGCCTTCGATCCCCGCCCGCAGAGCCC < 41bp 0.837855595023657 0.512323107971495 0.89228034 0.27481872 prediction 0.651064974104324 Functional Loss - TRNAU1AP ENSG00000180098 upstream Human protein_coding chr1:28879571 chr1:28879574 . . 0 24 hm5C_associated_SNPs_51513 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.78456068 1.77635683940025e-15 hm5C_site_46865 DeepMRMD:0.78456068;iRNA_m5C:1.77635683940025e-15 46866 chr18 12971218 12971218 1 + G T PCPG 12971215 + 12971195 12971235 41 AGTAGCCCCAACGCAATGGCCAAGGTTCAGATTTTTGAATA AGTAGCCCCAACGCAATGGCCAATGTTCAGATTTTTGAATA < 41bp 0.825516310361216 0.472236674702178 0.30642092 0.085152835 prediction 0.651032620722432 Functional Loss - SEH1L ENSG00000085415 CDS Human protein_coding chr18:12971215 chr18:12971218 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51514 0 0 1 0 2 Ribosome 0.50023164392132 0.500231966385173 0 0 hm5C_site_46866 DeepMRMD:0;iRNA_m5C:0 46867 chr16 28993729 28993729 1 + G T CESC 28993726 + 28993706 28993746 41 CCGGAGTCCTGGGTGTGGGCCTGGGTGTGGAGATCAGCCGC CCGGAGTCCTGGGTGTGGGCCTGTGTGTGGAGATCAGCCGC < 41bp 0.874780530296622 0.549265811105595 0.7623035 0.19153947 prediction 0.651029438382055 Functional Loss - SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28993726 chr16:28993729 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_51515 0 0 1 0 1 chromatin 0.50023164392643 0.500231312113153 0.524607 6.63626554819885e-07 hm5C_site_46867 DeepMRMD:0.524607;iRNA_m5C:6.63626554819885e-07 46868 chr8 99441362 99441362 1 + G T UCEC 99441359 + 99441339 99441379 41 GGGGATGTGGTCCCAGGGACCACGGCAGGAAAGCTGACTGC GGGGATGTGGTCCCAGGGACCACTGCAGGAAAGCTGACTGC < 41bp 0.873588077233415 0.548073474948808 0.6189488 0.8152725 prediction 0.651029204569215 Functional Loss - KCNS2 ENSG00000156486 CDS Human protein_coding chr8:99441359 chr8:99441362 synonymous SNV . 0 24 hm5C_associated_SNPs_51516 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_46868 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 46869 chr16 57151419 57151419 1 + G T LUAD 57151417 + 57151397 57151437 41 CGGCCTTACAGATCGCTGCCCAGGAGCTGTCCGACAACCGC CGGCCTTACAGATCGCTGCCCATGAGCTGTCCGACAACCGC < 41bp 0.825510949978485 0.496636064740343 0.7993808 0.29616266 prediction 0.65102189995697 Functional Loss - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57151417 chr16:57151419 nonsynonymous SNV 0.951 2 23 hm5C_associated_SNPs_51517 0 0 0 0 2 chromatin 0.500231643920963 0.500240776710196 0.5987616 0 hm5C_site_46869 DeepMRMD:0.5987616;iRNA_m5C:0 46870 chr15 99901568 99901568 1 + G T BLCA 99901565 + 99901545 99901585 41 GGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTT GGTGCTCCCATTCAAGTTTCCGATGTGAAGCTGCTTTCCTT < 41bp 0.825508534673516 0.469812250873124 0.9065335 0.20176357 prediction 0.651017069347033 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99901565 chr15:99901568 nonsynonymous SNV 0.920 3 24 hm5C_associated_SNPs_51518 0 0 1 0 1 Cytosol 0.500231643921092 0.500231641044487 0.813067 5.75321146278895e-09 hm5C_site_46870 DeepMRMD:0.813067;iRNA_m5C:5.75321146278895e-09 46871 chr7 127231094 127231094 1 + G T LUSC 127231091 + 127231071 127231111 41 GACATGCCCAACGCCATGCCCGTGAGCGAGCTGACTGACAA GACATGCCCAACGCCATGCCCGTTAGCGAGCTGACTGACAA < 41bp 0.861950021707923 0.536446992646032 0.10702932 0.015306979 prediction 0.651006058123782 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127231091 chr7:127231094 synonymous SNV . 0 24 hm5C_associated_SNPs_51519 0 0 1 0 2 Endoplasmic reticulum 0.500155735551347 0.500231661538784 0 0 hm5C_site_46871 DeepMRMD:0;iRNA_m5C:0 46872 chr19 41223543 41223543 1 + G T HNSC 41223540 + 41223520 41223560 41 GGCCAGCCCCTGGACACAGCCAGGGGTTCATGGGCCCTGGA GGCCAGCCCCTGGACACAGCCAGTGGTTCATGGGCCCTGGA < 41bp 0.825477005428032 0.467829602369341 0.93527704 0.2727183 prediction 0.650954010856063 Functional Loss - ITPKC ENSG00000086544 CDS Human protein_coding chr19:41223540 chr19:41223543 nonsynonymous SNV 0.045 1 24 hm5C_associated_SNPs_51520 0 0 0 0 0 Cytosol 0.500231643929488 0.50023164392106 0.87055408 1.68569602720936e-11 hm5C_site_46872 DeepMRMD:0.87055408;iRNA_m5C:1.68569602720936e-11 46873 chr19 58189806 58189806 1 + G T UCEC 58189803 + 58189783 58189823 41 GAGCAGGGTGTATCTCTCAACCAGAGCAGTCCTCCCCTGAG GAGCAGGGTGTATCTCTCAACCATAGCAGTCCTCCCCTGAG < 41bp 0.825456588361126 0.473203384324842 0.45634934 0.11077988 prediction 0.650913176722251 Functional Loss - ZSCAN4 ENSG00000180532 CDS Human protein_coding chr19:58189803 chr19:58189806 stopgain 0.001 0 24 hm5C_associated_SNPs_51521 0 0 0 0 0 exosome 0.500231643918175 0.500231644439007 0 0 hm5C_site_46873 DeepMRMD:0;iRNA_m5C:0 46874 chr3 147130465 147130465 1 + G T COAD 147130462 + 147130442 147130482 41 CCCAGTTCGCTGCGCAAACACATGAAGGTAATCGCCGCACT CCCAGTTCGCTGCGCAAACACATTAAGGTAATCGCCGCACT < 41bp 0.825436323653493 0.467178658045554 0.40259665 0.09492245 prediction 0.650872647306986 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130462 chr3:147130465 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51522 0 0 0 0 1 exosome 0.50023163168353 0.500231643804132 0 0 hm5C_site_46874 DeepMRMD:0;iRNA_m5C:0 46875 chrX 56590827 56590827 1 + A C LUSC 56590823 + 56590803 56590843 41 AGCTCCAGAGCCAGATGCAGCAGCAGCTTATGGCCAGCCCT AGCTCCAGAGCCAGATGCAGCAGCCGCTTATGGCCAGCCCT < 41bp 0.825415033298061 0.468169206657862 0.19243413 0.21992764 prediction 0.650830066596122 Functional Loss - UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56590823 chrX:56590827 nonsynonymous SNV 0.741 5 25 hm5C_associated_SNPs_51523 0 0 1 0 0 nucleus 0.500231643921311 0.500231643921092 0 4.37205827097387e-13 hm5C_site_46875 DeepMRMD:0;iRNA_m5C:4.37205827097387e-13 46876 chr18 56348415 56348415 1 + G T LUSC 56348412 + 56348392 56348432 41 TTGCTTTCAGTTGCCTAGACCTGGAGCAGTGTTCTCTTAAG TTGCTTTCAGTTGCCTAGACCTGTAGCAGTGTTCTCTTAAG < 41bp 0.825409223840794 0.468519073493798 0.43053836 0.25532797 prediction 0.650818447681589 Functional Loss - MALT1 ENSG00000172175 CDS Human protein_coding chr18:56348412 chr18:56348415 stopgain 1.000 1 24 hm5C_associated_SNPs_51524 0 0 1 0 1 Nucleus 0.500231645578383 0.500231641742594 0 7.67157781744743e-09 hm5C_site_46876 DeepMRMD:0;iRNA_m5C:7.67157781744743e-09 46877 chr11 67379610 67379610 1 + G T UCEC 67379607 + 67379587 67379627 41 GCAGGTGTGGACTGGATGAACAAGGTGATGGCACGTTTCGT GCAGGTGTGGACTGGATGAACAATGTGATGGCACGTTTCGT < 41bp 0.871452135474829 0.546049510478044 0.89742225 0.3700639 prediction 0.650805249993571 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67379607 chr11:67379610 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51525 0 0 1 0 1 Ribosome 0.500231646680416 0.500385529614865 0.7948445 0 hm5C_site_46877 DeepMRMD:0.7948445;iRNA_m5C:0 46878 chr7 48146585 48146585 1 + G T GBM 48146582 + 48146562 48146602 41 ATCCGGAAAACGGACCTTAACAAGAAGCTGGTGCAGGAGCT ATCCGGAAAACGGACCTTAACAATAAGCTGGTGCAGGAGCT < 41bp 0.839671856560209 0.514275309385446 0.43685442 0.09497005 prediction 0.650793094349524 Functional Loss - UPP1 ENSG00000183696 CDS Human protein_coding chr7:48146582 chr7:48146585 nonsynonymous SNV 0.285 1 24 hm5C_associated_SNPs_51526 0 0 1 0 1 Ribosome 0.500231643921098 0.500231643921092 0 1.11022302462516e-14 hm5C_site_46878 DeepMRMD:0;iRNA_m5C:1.11022302462516e-14 46879 chr6 38890926 38890926 1 + C A UCEC 38890929 - 38890909 38890949 41 GCTTTGAATTCTTTACTTTGCTGGGTCCACCGGATTTTTTC GCTTTGAATTCTTTACTTTGCTGTGTCCACCGGATTTTTTC < 41bp 0.851408619561854 0.526012186607864 0.42221153 0.09105387 prediction 0.650792865907979 Functional Loss - DNAH8 ENSG00000124721 CDS Human protein_coding chr6:38890929 chr6:38890926 synonymous SNV . 0 24 hm5C_associated_SNPs_51527 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921967 0 0 hm5C_site_46879 DeepMRMD:0;iRNA_m5C:0 46880 chr12 128899720 128899720 1 + G T UCS 128899717 + 128899697 128899737 41 GCCTGAGGGTCTTTGCTTTCCGAGAAACCAGAGAGGTGCGG GCCTGAGGGTCTTTGCTTTCCGATAAACCAGAGAGGTGCGG < 41bp 0.825392605590978 0.488756332042352 0.60422647 0.2331078 prediction 0.650785211181957 Functional Loss - TMEM132C ENSG00000181234 CDS Human protein_coding chr12:128899717 chr12:128899720 stopgain 0.050 0 24 hm5C_associated_SNPs_51528 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.20845294 0 hm5C_site_46880 DeepMRMD:0.20845294;iRNA_m5C:0 46881 chr1 212792760 212792760 1 + A C UCS 212792756 + 212792736 212792776 41 AAGGCTCAGATTGAGGAGCTCAAGAACGAGAAGCAGCATTT AAGGCTCAGATTGAGGAGCTCAAGCACGAGAAGCAGCATTT < 41bp 0.825388958560019 0.461660124031118 0.14773378 0.08281928 prediction 0.650777917120038 Functional Loss - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212792756 chr1:212792760 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_51529 0 0 1 0 1 Cytoplasm 0.500231643921392 0.50023164392109 0 6.0329519158131e-13 hm5C_site_46881 DeepMRMD:0;iRNA_m5C:6.0329519158131e-13 46882 chr2 27802096 27802096 1 + G T UCEC 27802093 + 27802073 27802113 41 TGCCTGGAGGCAGCGACTACCAAGAAAATATCTCTCCACTA TGCCTGGAGGCAGCGACTACCAATAAAATATCTCTCCACTA < 41bp 0.82538761045012 0.47726618141899 0.7217961 0.16483748 prediction 0.650775220900239 Functional Loss - C2orf16 ENSG00000221843 CDS Human protein_coding chr2:27802093 chr2:27802096 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_51530 0 0 0 0 0 chromatin 0.500231643921072 0.500231643921091 0.4435922 0 hm5C_site_46882 DeepMRMD:0.4435922;iRNA_m5C:0 46883 chr10 116593078 116593078 1 + G T LUSC 116593075 + 116593055 116593095 41 TGGTTCAAGAAGAAAATGAACGGGAATCTGGAGAGACAGGG TGGTTCAAGAAGAAAATGAACGGTAATCTGGAGAGACAGGG < 41bp 0.846820758541743 0.521444836131971 0.83401346 0.7095293 prediction 0.650751844819544 Functional Loss - FAM160B1 ENSG00000151553 CDS Human protein_coding chr10:116593075 chr10:116593078 stopgain 0.999 1 24 hm5C_associated_SNPs_51531 0 0 1 0 2 nucleoplasm 0.5002316456691 0.500231643921092 0.24896832 3.49601703142355e-09 hm5C_site_46883 DeepMRMD:0.24896832;iRNA_m5C:3.49601703142355e-09 46884 chr22 39482368 39482368 1 + G T LUAD 39482365 + 39482345 39482385 41 TTCCCTTTTGGAAGCTGGACCTGGACCAGGACTACAGGGTT TTCCCTTTTGGAAGCTGGACCTGTACCAGGACTACAGGGTT < 41bp 0.825374851189736 0.456254257485406 0.41658565 0.34387437 prediction 0.650749702379472 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39482365 chr22:39482368 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_51532 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921545 0 0 hm5C_site_46884 DeepMRMD:0;iRNA_m5C:0 46885 chr10 43609034 43609034 1 + G T ACC 43609031 + 43609011 43609051 41 CATTGTTGGGGGACACGAGCCTGGGGAGCCCCGGGGGATTA CATTGTTGGGGGACACGAGCCTGTGGAGCCCCGGGGGATTA < 41bp 0.876694829294545 0.551324012160379 0.9232881 0.64939857 prediction 0.650741634268332 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43609031 chr10:43609034 nonsynonymous SNV 0.002 4 24 hm5C_associated_SNPs_51533 0 0 0 0 1 Cytosol 0.500231642454254 0.500231643921093 0.54777906 0 hm5C_site_46885 DeepMRMD:0.54777906;iRNA_m5C:0 46886 chr11 76825384 76825384 1 + G T UCEC 76825381 + 76825361 76825401 41 TCTGAGCCCATCGACCTGACCGAGGGTGACTTTGCCAACGA TCTGAGCCCATCGACCTGACCGATGGTGACTTTGCCAACGA < 41bp 0.82535955086729 0.452908512610913 0.89986944 0.26048684 prediction 0.650719101734579 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76825381 chr11:76825384 nonsynonymous SNV 0.266 3 24 hm5C_associated_SNPs_51534 0 0 0 0 2 Endoplasmic reticulum 0.500231638832358 0.50023164077751 0.79973888 0 hm5C_site_46886 DeepMRMD:0.79973888;iRNA_m5C:0 46887 chr19 11474845 11474845 1 + G T STAD 11474842 + 11474822 11474862 41 GTCTCTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATTC GTCTCTTTGTCTCAGGAACCCGATGTCTGCAGGCCGCATTC < 41bp 0.876893300686 0.551548288767699 0.933892 0.6247693 prediction 0.650690023836603 Functional Loss - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474842 chr19:11474845 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_51535 0 0 1 0 2 exosome 0.500231643974686 0.500231180970119 0.6182454 9.26009134039063e-07 hm5C_site_46887 DeepMRMD:0.6182454;iRNA_m5C:9.26009134039063e-07 46888 chr1 161719735 161719735 1 + G T rs149171825 161719732 + 161719712 161719752 41 GCCGTCGCGGAGCCAGATCACCTGAGGGAAGCGGGCATCAC GCCGTCGCGGAGCCAGATCACCTTAGGGAAGCGGGCATCAC < 41bp 0.851305161551979 0.525974064972527 0.84703255 0.40880877 prediction 0.650662193158905 Functional Loss - DUSP12 ENSG00000081721 CDS Human protein_coding chr1:161719732 chr1:161719735 synonymous SNV . 0 24 hm5C_associated_SNPs_51536 0 0 1 0 0 Ribosome 0.500231599809437 0.500231645361165 0.6940651 0 hm5C_site_46888 DeepMRMD:0.6940651;iRNA_m5C:0 46889 chr12 4722853 4722853 1 + G T SKCM 4722850 + 4722830 4722870 41 GCTGTCGGGGCGGAGGTGTCCATGACCTCCCCAGGACAGAG GCTGTCGGGGCGGAGGTGTCCATTACCTCCCCAGGACAGAG < 41bp 0.852527497421515 0.527219676953832 0.4553097 0.20856977 prediction 0.650615640935366 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4722850 chr12:4722853 nonsynonymous SNV 0.033 0 24 hm5C_associated_SNPs_51537 0 0 1 0 0 Ribosome 0.50023234302411 0.500231647942078 0 1.39016406341952e-06 hm5C_site_46889 DeepMRMD:0;iRNA_m5C:1.39016406341952e-06 46890 chr4 48422249 48422249 1 + G T UCEC 48422246 + 48422226 48422266 41 GCTCTGGTTCTCCTGGTAGCCAAGAAATAACACAGCTCACA GCTCTGGTTCTCCTGGTAGCCAATAAATAACACAGCTCACA < 41bp 0.842230991443766 0.516924313921467 0.43779805 0.13785893 prediction 0.650613355044596 Functional Loss - SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48422246 chr4:48422249 stopgain 0.898 0 24 hm5C_associated_SNPs_51538 0 0 0 0 0 Cytosol 0.500231643921247 0.500231603089984 0 8.1662525630577e-08 hm5C_site_46890 DeepMRMD:0;iRNA_m5C:8.1662525630577e-08 46891 chr1 201845312 201845312 1 + A C rs575388259 201845308 + 201845288 201845328 41 TGACCCTTGGCCCTTGGCCTCGGCAGTGACACTGATGACAA TGACCCTTGGCCCTTGGCCTCGGCCGTGACACTGATGACAA < 41bp 0.825284185490678 0.487988330639916 0.1672892 0.14456236 prediction 0.650568370981357 Functional Loss - IPO9 ENSG00000198700 CDS Human protein_coding chr1:201845308 chr1:201845312 synonymous SNV . 0 25 hm5C_associated_SNPs_51539 0 0 1 0 0 Nucleus 0.500231643921095 0.500231643921093 0 4.66293670342566e-15 hm5C_site_46891 DeepMRMD:0;iRNA_m5C:4.66293670342566e-15 46892 chrX 100667839 100667839 1 + G T LUSC 100667836 + 100667816 100667856 41 GTCCAGTTTCCAGAGCACCACAGGGCACTGTGTACACATGA GTCCAGTTTCCAGAGCACCACAGTGCACTGTGTACACATGA < 41bp 0.850463621646578 0.525211934583041 0.3386441 0.18186596 prediction 0.650503374127074 Functional Loss - HNRNPH2 ENSG00000126945 CDS Human protein_coding chrX:100667836 chrX:100667839 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51540 0 0 1 0 0 Cytosol 0.500231643941103 0.500295308439163 0 0 hm5C_site_46892 DeepMRMD:0;iRNA_m5C:0 46893 chr7 154863188 154863188 1 + G T LUSC 154863185 + 154863165 154863205 41 TCTGAGGGCAGCGAGGAGTGCCAGGTAAGCCGCGAGCCTTC TCTGAGGGCAGCGAGGAGTGCCATGTAAGCCGCGAGCCTTC < 41bp 0.825249659225621 0.466752414056867 0.8902221 0.63754797 prediction 0.650499318451242 Functional Loss - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154863185 chr7:154863188 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_51541 0 0 0 0 0 exosome 0.500231643916875 0.500231299893688 0.50534826 6.88046374541784e-07 hm5C_site_46893 DeepMRMD:0.50534826;iRNA_m5C:6.88046374541784e-07 46894 chr3 186505598 186505598 1 + G T UCEC 186505595 + 186505575 186505615 41 ATGCCATTGTGTTTCAGGCTCGCGGGATTGATGTGCAACAA ATGCCATTGTGTTTCAGGCTCGCTGGATTGATGTGCAACAA < 41bp 0.836954568721447 0.511713844371144 0.51355577 0.09392592 prediction 0.650481448700607 Functional Loss - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505595 chr3:186505598 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51542 0 0 1 4 2 Nucleus 0.500231643921092 0.500231760567046 0.0271115399999999 0 hm5C_site_46894 DeepMRMD:0.0271115399999999;iRNA_m5C:0 46895 chr11 558747 558747 1 + C A rs535898670 558750 - 558730 558770 41 GCAGGTTGGCTCTTGAGTCCCTGGACCCTCGCACACTGCGG GCAGGTTGGCTCTTGAGTCCCTGTACCCTCGCACACTGCGG < 41bp 0.871029037196395 0.54578956314305 0.23363265 0.04612866 prediction 0.65047894810669 Functional Loss - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:558750 chr11:558747 nonsynonymous SNV 0.138 3 24 hm5C_associated_SNPs_51543 0 0 0 0 1 chromatin 0.500231643921142 0.500231643921092 0 9.9475983006414e-14 hm5C_site_46895 DeepMRMD:0;iRNA_m5C:9.9475983006414e-14 46896 chr22 29708004 29708004 1 + G T BLCA 29708001 + 29707981 29708021 41 AGCAGCAGCTGTTCCGGCGCCTGGAAGAGGAGTTCCTGGCC AGCAGCAGCTGTTCCGGCGCCTGTAAGAGGAGTTCCTGGCC < 41bp 0.852967622530024 0.527730460626672 0.52654856 0.16200736 prediction 0.650474323806703 Functional Loss - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29708001 chr22:29708004 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_51544 0 0 0 0 0 Ribosome 0.500232227986586 0.500231644635679 0.0530971200000001 1.16670181316003e-06 hm5C_site_46896 DeepMRMD:0.0530971200000001;iRNA_m5C:1.16670181316003e-06 46897 chr5 50685631 50685631 1 + G T BLCA 50685628 + 50685608 50685648 41 AACCCGCGGCCAGATGCGCTCATGAAGGAGCAACTGGTAGA AACCCGCGGCCAGATGCGCTCATTAAGGAGCAACTGGTAGA < 41bp 0.825203811574032 0.467257025773083 0.7005742 0.1295304 prediction 0.650407623148064 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685628 chr5:50685631 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51545 0 0 0 0 0 exosome 0.500231638134953 0.500231643921092 0.4011484 0 hm5C_site_46897 DeepMRMD:0.4011484;iRNA_m5C:0 46898 chr19 5668206 5668206 1 + G T LUSC 5668203 + 5668183 5668223 41 TTTGCCCCAGGCGGGGCCTCCCGGGGCCACCCCATCCCACA TTTGCCCCAGGCGGGGCCTCCCGTGGCCACCCCATCCCACA < 41bp 0.864827743789742 0.539624784046646 0.91797644 0.5460925 prediction 0.650405919486191 Functional Loss - SAFB ENSG00000160633 CDS Human protein_coding chr19:5668203 chr19:5668206 synonymous SNV . 0 24 hm5C_associated_SNPs_51546 0 0 1 0 1 chromatin 0.500231643920892 0.500231643921092 0.74376788 0 hm5C_site_46898 DeepMRMD:0.74376788;iRNA_m5C:0 46899 chr7 143748140 143748140 1 + G T LUAD 143748137 + 143748117 143748157 41 TGGGGCCGCTCTGCCTGGTGCTGGTCTCCTACTCGCGCATC TGGGGCCGCTCTGCCTGGTGCTGTTCTCCTACTCGCGCATC < 41bp 0.825193401998596 0.462751221934476 0.2516064 0.21965069 prediction 0.650386803997192 Functional Loss - OR2A5 ENSG00000221836 CDS Human protein_coding chr7:143748137 chr7:143748140 nonsynonymous SNV 0.331 0 24 hm5C_associated_SNPs_51547 0 0 0 0 0 unknown 0.500231647893724 0.500231643921255 0 7.94493848488287e-09 hm5C_site_46899 DeepMRMD:0;iRNA_m5C:7.94493848488287e-09 46900 chr20 18296360 18296360 1 + G T UCEC 18296357 + 18296337 18296377 41 GGAAGTCAACGCTAATCATACACGAACGGACACACTCCGGT GGAAGTCAACGCTAATCATACACTAACGGACACACTCCGGT < 41bp 0.82518513486462 0.474973112250766 0.10930693 0.034399003 prediction 0.65037026972924 Functional Loss - ZNF133 ENSG00000125846 CDS Human protein_coding chr20:18296357 chr20:18296360 stopgain 0.939 0 24 hm5C_associated_SNPs_51548 0 0 0 0 0 Cytosol 0.500232030982424 0.500232917535507 0 0 hm5C_site_46900 DeepMRMD:0;iRNA_m5C:0 46901 chr1 151504962 151504962 1 + G T BLCA 151504959 + 151504939 151504979 41 ATTATAAGGAAAAGGCCCGGCGGGAGGTGGCAGATGCCCAG ATTATAAGGAAAAGGCCCGGCGGTAGGTGGCAGATGCCCAG < 41bp 0.857349860948243 0.532172619259769 0.8941133 0.8558443 prediction 0.650354483376948 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151504959 chr1:151504962 stopgain 0.998 1 24 hm5C_associated_SNPs_51549 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.076538 0 hm5C_site_46901 DeepMRMD:0.076538;iRNA_m5C:0 46902 chr17 27047774 27047774 1 + G T UCEC 27047771 + 27047751 27047791 41 AAAGCGAAGGCTTTAAAGGCCAAGAAGGCAGTGTTGAAAGG AAAGCGAAGGCTTTAAAGGCCAATAAGGCAGTGTTGAAAGG < 41bp 0.825165710538965 0.468105976718716 0.03269258 0.028321117 prediction 0.650331421077931 Functional Loss - RPL23A ENSG00000198242 CDS Human protein_coding chr17:27047771 chr17:27047774 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_51550 0 0 0 0 1 Cytosol 0.500231643729429 0.500231631636093 0 2.41866713324157e-08 hm5C_site_46902 DeepMRMD:0;iRNA_m5C:2.41866713324157e-08 46903 chr5 79616110 79616110 1 + G T UCEC 79616107 + 79616087 79616127 41 ACCCTACTCCTGATCCTCATCAAGAATATCTGGACCCTAGG ACCCTACTCCTGATCCTCATCAATAATATCTGGACCCTAGG < 41bp 0.825141054793962 0.483117288759436 0.57343817 0.12933132 prediction 0.650282109587924 Functional Loss - SPZ1 ENSG00000164299 CDS Human protein_coding chr5:79616107 chr5:79616110 stopgain 0.213 0 24 hm5C_associated_SNPs_51551 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.14687634 0 hm5C_site_46903 DeepMRMD:0.14687634;iRNA_m5C:0 46904 chr6 43399993 43399993 1 + G T LUAD 43399990 + 43399970 43400010 41 TCTTCCAGTTGCTTTGCCACCAGGGGCAGGCCCAGGACCCA TCTTCCAGTTGCTTTGCCACCAGTGGCAGGCCCAGGACCCA < 41bp 0.871071049531186 0.54593320278577 0.91012454 0.5352807 prediction 0.650275693490833 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43399990 chr6:43399993 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_51552 0 0 1 0 0 chromatin 0.500231643921092 0.500231643919904 0.74968768 2.37720954032739e-12 hm5C_site_46904 DeepMRMD:0.74968768;iRNA_m5C:2.37720954032739e-12 46905 chr1 171300844 171300844 1 + G T LUAD 171300841 + 171300821 171300861 41 ACAAGATCCCAGAAGGCTTTCAGGGCAAACGCGTCTTGGTG ACAAGATCCCAGAAGGCTTTCAGTGCAAACGCGTCTTGGTG < 41bp 0.825131795597278 0.456808603083832 0.9234748 0.17372197 prediction 0.650263591194556 Functional Loss - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300841 chr1:171300844 nonsynonymous SNV 0.010 3 24 hm5C_associated_SNPs_51553 0 0 0 0 2 cytosol 0.500231643921092 0.500231643921092 0.8469496 0 hm5C_site_46905 DeepMRMD:0.8469496;iRNA_m5C:0 46906 chr20 20051628 20051628 1 + G T BLCA 20051625 + 20051605 20051645 41 GGGTGTCAGTGTTCCGGGAGCTCGACAGTGACATCCCATGC GGGTGTCAGTGTTCCGGGAGCTCTACAGTGACATCCCATGC < 41bp 0.82511911718076 0.481940003664183 0.0554986 0.85627353 prediction 0.65023823436152 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20051625 chr20:20051628 nonsynonymous SNV 0.928 2 24 hm5C_associated_SNPs_51554 0 0 0 0 1 nucleus 0.500231643749506 0.500231644200758 0 0 hm5C_site_46906 DeepMRMD:0;iRNA_m5C:0 46907 chr21 46066960 46066960 1 + G T UCEC 46066957 + 46066937 46066977 41 TGCTGCGTGCCTGTCTGCTGCAAGACTGTCTACTGCAAGCC TGCTGCGTGCCTGTCTGCTGCAATACTGTCTACTGCAAGCC < 41bp 0.862704262661611 0.537589787344143 0.519569 0.19005969 prediction 0.650228950634937 Functional Loss - KRTAP10-11 ENSG00000243489 CDS Human protein_coding chr21:46066957 chr21:46066960 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_51555 0 0 0 0 0 unknown 0.50023141581076 0.50023165374578 0.0391379999999999 0 hm5C_site_46907 DeepMRMD:0.0391379999999999;iRNA_m5C:0 46908 chr6 4892436 4892436 1 + G T LUAD 4892433 + 4892413 4892453 41 AGAAACTGGACCCCGTCGAGCAGGGTCAGGAGGACACAGTG AGAAACTGGACCCCGTCGAGCAGTGTCAGGAGGACACAGTG < 41bp 0.825086024632922 0.460126545151887 0.8940984 0.31923753 prediction 0.650172049265843 Functional Loss - CDYL ENSG00000153046 CDS Human protein_coding chr6:4892433 chr6:4892436 nonsynonymous SNV 0.882 2 24 hm5C_associated_SNPs_51556 0 0 1 0 0 Cytoplasm 0.500231643922494 0.500231643921092 0.7881968 2.80264700336375e-12 hm5C_site_46908 DeepMRMD:0.7881968;iRNA_m5C:2.80264700336375e-12 46909 chr6 132874098 132874098 1 + G T LUAD 132874095 + 132874075 132874115 41 GTGACTGTGATGCTTTTCAGCATGGTCAGGACGGTGGAGAG GTGACTGTGATGCTTTTCAGCATTGTCAGGACGGTGGAGAG < 41bp 0.857327202671423 0.532243545605517 0.19644839 0.111899585 prediction 0.650167314131813 Functional Loss - TAAR8 ENSG00000146385 CDS Human protein_coding chr6:132874095 chr6:132874098 nonsynonymous SNV 0.130 2 24 hm5C_associated_SNPs_51557 0 0 0 0 0 unknown 0.50023158521578 0.500235815286378 0 0 hm5C_site_46909 DeepMRMD:0;iRNA_m5C:0 46910 chr19 10398376 10398376 1 + G T LUSC 10398373 + 10398353 10398393 41 GCCTGGAGCGCTTCACCGGCCTGGATCTGGCCAACGTGACC GCCTGGAGCGCTTCACCGGCCTGTATCTGGCCAACGTGACC < 41bp 0.863012495743953 0.537950794405553 0.06572932 0.014955848 prediction 0.6501234026768 Functional Loss - ICAM4 ENSG00000105371 CDS Human protein_coding chr19:10398373 chr19:10398376 nonsynonymous SNV 0.054 1 24 hm5C_associated_SNPs_51558 0 0 1 0 1 Endoplasmic reticulum 0.500227850652273 0.500231644067342 0 0 hm5C_site_46910 DeepMRMD:0;iRNA_m5C:0 46911 chr1 248039238 248039238 1 + G T LUSC 248039235 + 248039215 248039255 41 GGATCCCGCCACGGCGCACCCGAGTCTGCTCTTGACCGCCG GGATCCCGCCACGGCGCACCCGATTCTGCTCTTGACCGCCG < 41bp 0.825060127019229 0.455557309438108 0.10706109 0.020797074 prediction 0.650120254038458 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039235 chr1:248039238 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51559 0 0 0 0 1 Cytosol 0.500231643458366 0.500230433741592 0 2.41943354839513e-06 hm5C_site_46911 DeepMRMD:0;iRNA_m5C:2.41943354839513e-06 46912 chr12 110206655 110206655 1 + G T HNSC 110206652 + 110206632 110206672 41 CTGCGTGCCTACAGTGGGAGCACGGTGGCCAGCAAGTCCCC CTGCGTGCCTACAGTGGGAGCACTGTGGCCAGCAAGTCCCC < 41bp 0.825053855105334 0.458304163758094 0.84588695 0.3712785 prediction 0.650107710210668 Functional Loss - FAM222A ENSG00000139438 CDS Human protein_coding chr12:110206652 chr12:110206655 synonymous SNV . 0 24 hm5C_associated_SNPs_51560 0 0 0 0 0 exosome 0.500231643407943 0.500231739375309 0.6917739 0 hm5C_site_46912 DeepMRMD:0.6917739;iRNA_m5C:0 46913 chr19 16962246 16962246 1 + G T LAML 16962243 + 16962223 16962263 41 TTCACAGGAAACGGGCCGTGCGAGATGCACAGCGTGCAGAA TTCACAGGAAACGGGCCGTGCGATATGCACAGCGTGCAGAA < 41bp 0.825026909656616 0.457264619790597 0.797542 0.2647515 prediction 0.650053819313232 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962243 chr19:16962246 nonsynonymous SNV 0.614 0 24 hm5C_associated_SNPs_51561 0 0 1 0 2 Cytosol 0.500231913569706 0.500215735172626 0.595084 3.23567941584724e-05 hm5C_site_46913 DeepMRMD:0.595084;iRNA_m5C:3.23567941584724e-05 46914 chrX 21985363 21985363 1 + G T HNSC 21985361 + 21985341 21985381 41 TCCAGTCCATTTTCCAGGAGCAGGGGATGGCGGAGTCGGTG TCCAGTCCATTTTCCAGGAGCATGGGATGGCGGAGTCGGTG < 41bp 0.82693218659015 0.501907872607447 0.91130996 0.7653548 prediction 0.650048627965405 Functional Loss - SMS ENSG00000102172 CDS Human protein_coding chrX:21985361 chrX:21985363 nonsynonymous SNV 0.939 1 23 hm5C_associated_SNPs_51562 0 0 0 0 2 Ribosome 0.500231643921093 0.500231643939692 0.29191032 0 hm5C_site_46914 DeepMRMD:0.29191032;iRNA_m5C:0 46915 chr15 22848249 22848249 1 + G T LIHC 22848246 + 22848226 22848266 41 ATCTCATTTCAGGTTACTTTCAGGAGTGAAAAAGCTCTTTA ATCTCATTTCAGGTTACTTTCAGTAGTGAAAAAGCTCTTTA < 41bp 0.845741624653577 0.520735100099794 0.90739524 0.28502125 prediction 0.650013049107566 Functional Loss - TUBGCP5 ENSG00000153575 CDS Human other chr15:22848246 chr15:22848249 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_51563 0 0 1 0 2 chromatin 0.500231454354073 0.500231560080291 0.81479048 0 hm5C_site_46915 DeepMRMD:0.81479048;iRNA_m5C:0 46916 chr19 15904891 15904891 1 + A C rs142998354 15904887 + 15904867 15904907 41 GCTAAACCACACCTCCGTGTCTGAATTCATCCTCGTTGGCT GCTAAACCACACCTCCGTGTCTGACTTCATCCTCGTTGGCT < 41bp 0.824981469491818 0.493039329163049 0.22602463 0.08662692 prediction 0.649962938983636 Functional Loss - OR10H5 ENSG00000172519 CDS Human protein_coding chr19:15904887 chr19:15904891 nonsynonymous SNV 0.009 2 25 hm5C_associated_SNPs_51564 0 0 0 0 0 unknown 0.500231643921138 0.500231643921037 0 2.02060590481778e-13 hm5C_site_46916 DeepMRMD:0;iRNA_m5C:2.02060590481778e-13 46917 chr18 32887072 32887072 1 + G T LUAD 32887069 + 32887049 32887089 41 TCTTCATCAGAGAATCCACACTGGAGAGAAACCTTATGCAT TCTTCATCAGAGAATCCACACTGTAGAGAAACCTTATGCAT < 41bp 0.824967536320815 0.482211548805205 0.08361447 0.024864197 prediction 0.649935072641629 Functional Loss - ZNF271P ENSG00000257267 ncRNA_exonic Human transcribed_unitary_pseudogene chr18:32887069 chr18:32887072 . . 0 24 hm5C_associated_SNPs_51565 0 0 1 0 0 unknown 0.500231643911236 0.500231653880784 0 0 hm5C_site_46917 DeepMRMD:0;iRNA_m5C:0 46918 chr19 56925772 56925772 1 + G T SKCM 56925769 + 56925749 56925789 41 TTGGAGCAAGGAAAAGAGCCCTGGATGGTGAAGAAGGAGGG TTGGAGCAAGGAAAAGAGCCCTGTATGGTGAAGAAGGAGGG < 41bp 0.860190867717412 0.535227461012629 0.39965722 0.47538465 prediction 0.649926813409565 Functional Loss - ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925769 chr19:56925772 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_51566 0 0 0 0 2 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_46918 DeepMRMD:0;iRNA_m5C:0 46919 chr10 124909258 124909258 1 + G T LUAD 124909255 + 124909235 124909275 41 GGCGCTGAGCGGCAGGCCGGCGCGGCCAAGAAGAAGACGCG GGCGCTGAGCGGCAGGCCGGCGCTGCCAAGAAGAAGACGCG < 41bp 0.861424244303875 0.536463450527542 0.3341514 0.22847915 prediction 0.649921587552668 Functional Loss - HMX2 ENSG00000188816 CDS Human protein_coding chr10:124909255 chr10:124909258 synonymous SNV . 0 24 hm5C_associated_SNPs_51567 0 0 0 0 0 exosome 0.500231643921833 0.500231643926368 0 0 hm5C_site_46919 DeepMRMD:0;iRNA_m5C:0 46920 chr9 103348235 103348235 1 + G T COAD 103348232 + 103348212 103348252 41 AAGGAGCACATTGATAATATCAAGAAGGCATTTTCCAAAGA AAGGAGCACATTGATAATATCAATAAGGCATTTTCCAAAGA < 41bp 0.824950168240818 0.478365660169506 0.65596485 0.106591225 prediction 0.649900336481637 Functional Loss - CAVIN4 ENSG00000170681 CDS Human protein_coding chr9:103348232 chr9:103348235 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51568 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.3119297 0 hm5C_site_46920 DeepMRMD:0.3119297;iRNA_m5C:0 46921 chr7 106509092 106509092 1 + G T LUAD 106509089 + 106509069 106509109 41 TGGGACTGCGACCGCAAGTTCAGGGTCAAGATCAGAGGCAT TGGGACTGCGACCGCAAGTTCAGTGTCAAGATCAGAGGCAT < 41bp 0.882488160748074 0.557547926703377 0.87687206 0.09984368 prediction 0.649880468089394 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106509089 chr7:106509092 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_51569 0 0 0 0 0 Cytosol 0.500231643559365 0.500452790798099 0.75374412 0 hm5C_site_46921 DeepMRMD:0.75374412;iRNA_m5C:0 46922 chr20 37357066 37357066 1 + G T LUAD 37357063 + 37357043 37357083 41 GCCATTTATGTGCCGCACTTCGCGCTGCTCATGGGCCTCAC GCCATTTATGTGCCGCACTTCGCTCTGCTCATGGGCCTCAC < 41bp 0.82491171326692 0.47440196179601 0.3559463 0.1678023 prediction 0.649823426533841 Functional Loss - SLC32A1 ENSG00000101438 CDS Human protein_coding chr20:37357063 chr20:37357066 synonymous SNV . 0 24 hm5C_associated_SNPs_51570 0 0 0 0 0 exosome 0.500231643895743 0.500231643921099 0 0 hm5C_site_46922 DeepMRMD:0;iRNA_m5C:0 46923 chr22 39428444 39428444 1 + G T rs577940875 39428441 + 39428421 39428461 41 TCCTGAGCCCCTCCTGGCCTCAGGGCCATTCCATAGTGCCC TCCTGAGCCCCTCCTGGCCTCAGTGCCATTCCATAGTGCCC < 41bp 0.852640251137414 0.527731724954935 0.92298585 0.18039668 prediction 0.649817052364958 Functional Loss - APOBEC3D ENSG00000243811 UTR3 Human protein_coding chr22:39428441 chr22:39428444 . . 0 24 hm5C_associated_SNPs_51571 0 0 1 0 0 Nucleus 0.500231643921031 0.500231643921092 0.8459717 0 hm5C_site_46923 DeepMRMD:0.8459717;iRNA_m5C:0 46924 chr13 111995213 111995213 1 + A C STAD 111995209 + 111995189 111995229 41 CATCCAGCAGCAAGTTAGGGCTGAAGCCTGCGAGTCCTGGG CATCCAGCAGCAAGTTAGGGCTGACGCCTGCGAGTCCTGGG < 41bp 0.824908355569267 0.46815916343806 0.2250931 0.1191017 prediction 0.649816711138534 Functional Loss - TEX29 ENSG00000153495 CDS Human protein_coding chr13:111995209 chr13:111995213 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_51572 0 0 0 0 1 exosome 0.500231646303364 0.500231643921275 0 4.76417860717504e-09 hm5C_site_46924 DeepMRMD:0;iRNA_m5C:4.76417860717504e-09 46925 chrX 30237159 30237159 1 + G T UCEC 30237156 + 30237136 30237176 41 GAGCACTTCCCTGAGATCCTCAAGAAAGCCTCTGAGGGCCT GAGCACTTCCCTGAGATCCTCAATAAAGCCTCTGAGGGCCT < 41bp 0.82489083062305 0.459506885260222 0.2967399 0.12753323 prediction 0.6497816612461 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30237156 chrX:30237159 nonsynonymous SNV 0.037 0 24 hm5C_associated_SNPs_51573 0 0 0 0 0 exosome 0.50023164392108 0.500231643924043 0 0 hm5C_site_46925 DeepMRMD:0;iRNA_m5C:0 46926 chr17 76134155 76134155 1 + G T UCEC 76134152 + 76134132 76134172 41 CGGGAGGAGTTCCTGGTCCCCAAGAATGTGCTGGACATCGT CGGGAGGAGTTCCTGGTCCCCAATAATGTGCTGGACATCGT < 41bp 0.867346794579665 0.542457511122512 0.6280242 0.4777867 prediction 0.649778566914306 Functional Loss - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76134152 chr17:76134155 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_51574 0 0 0 0 1 chromatin 0.500231639267221 0.500231348787564 0.2560484 5.80959313989382e-07 hm5C_site_46926 DeepMRMD:0.2560484;iRNA_m5C:5.80959313989382e-07 46927 chr1 152586405 152586405 1 + G T LUAD 152586402 + 152586382 152586422 41 AGCCTCCTCCTGCTGTGCTCCAAGACCTGGGTGCTGTGGTG AGCCTCCTCCTGCTGTGCTCCAATACCTGGGTGCTGTGGTG < 41bp 0.850903087914098 0.526021205116243 0.16386658 0.092590064 prediction 0.649763765595709 Functional Loss - LCE3B ENSG00000187238 CDS Human protein_coding chr1:152586402 chr1:152586405 nonsynonymous SNV 0.082 0 24 hm5C_associated_SNPs_51575 0 0 0 0 0 unknown 0.500231643781776 0.500231643913387 0 0 hm5C_site_46927 DeepMRMD:0;iRNA_m5C:0 46928 chr6 27730641 27730641 1 + A C rs151307992 27730637 + 27730617 27730657 41 GCCATTTCTTGTGATGTCACCTGAAGCCTTGGCGGGTAGCT GCCATTTCTTGTGATGTCACCTGACGCCTTGGCGGGTAGCT < 41bp 0.824874194684042 0.488069026982615 0.32954478 0.22889906 prediction 0.649748389368084 Functional Loss - LOC100131289 ENSG00000216915;ENSG00000218069 intergenic Human other chr6:27730637 chr6:27730641 . . 0 25 hm5C_associated_SNPs_51576 0 0 0 0 0 unknown 0.500234423550354 0.500243793502256 0 0 hm5C_site_46928 DeepMRMD:0;iRNA_m5C:0 46929 chrX 101382220 101382220 1 + A C STAD 101382216 + 101382196 101382236 41 GATGATATACCCAGGAAAGCCAAAAGAAAAACCAACAAGGG GATGATATACCCAGGAAAGCCAAACGAAAAACCAACAAGGG < 41bp 0.824840615317851 0.443541980464755 0.8722615 0.7830266 prediction 0.649681230635703 Functional Loss - TCEAL2 ENSG00000184905 CDS Human protein_coding chrX:101382216 chrX:101382220 synonymous SNV . 0 25 hm5C_associated_SNPs_51577 0 0 0 0 0 exosome 0.500231643921092 0.500231643919934 0.1784698 2.31659136318285e-12 hm5C_site_46929 DeepMRMD:0.1784698;iRNA_m5C:2.31659136318285e-12 46930 chr19 19349150 19349150 1 + G T UCEC 19349147 + 19349127 19349167 41 CGGAGGGCATGGGAAGATGCCGAGAAGGACTGCCGCCGCCG CGGAGGGCATGGGAAGATGCCGATAAGGACTGCCGCCGCCG < 41bp 0.869595344256091 0.544783199823727 0.86034465 0.35679835 prediction 0.649624288864729 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19349147 chr19:19349150 nonsynonymous SNV 0.834 3 24 hm5C_associated_SNPs_51578 0 0 0 0 2 exosome 0.500231643931242 0.500231643921093 0.7206893 2.0297319380802e-11 hm5C_site_46930 DeepMRMD:0.7206893;iRNA_m5C:2.0297319380802e-11 46931 chr2 187627521 187627521 1 + G T LUSC 187627518 + 187627498 187627538 41 AGACTAACATCTGGAAGAAGCGAGAGGAACGCCCACTGATT AGACTAACATCTGGAAGAAGCGATAGGAACGCCCACTGATT < 41bp 0.824781430843256 0.478229128385726 0.92951155 0.4184333 prediction 0.649562861686511 Functional Loss - FAM171B ENSG00000144369 CDS Human protein_coding chr2:187627518 chr2:187627521 stopgain 1.000 1 24 hm5C_associated_SNPs_51579 0 0 0 0 0 nucleoplasm 0.500231643921046 0.500231643921092 0.8590231 0 hm5C_site_46931 DeepMRMD:0.8590231;iRNA_m5C:0 46932 chr20 30522575 30522575 1 + G T LUAD 30522572 + 30522552 30522592 41 GAGGCAGTGGAGACACTCTTCAGGGACATCGACAACATCTT GAGGCAGTGGAGACACTCTTCAGTGACATCGACAACATCTT < 41bp 0.824772055918489 0.458513527489832 0.49422726 0.14212826 prediction 0.649544111836978 Functional Loss - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30522572 chr20:30522575 nonsynonymous SNV 0.898 0 24 hm5C_associated_SNPs_51580 0 0 0 0 1 exosome 0.500231644075266 0.500231240044388 0 8.08061757062717e-07 hm5C_site_46932 DeepMRMD:0;iRNA_m5C:8.08061757062717e-07 46933 chr7 100304462 100304462 1 + A C KIRC 100304458 + 100304438 100304478 41 CGCCAGGGCACACAGCATGGCAGAAAACCGAGAGCCCCGCG CGCCAGGGCACACAGCATGGCAGACAACCGAGAGCCCCGCG < 41bp 0.862931150221523 0.538169203659757 0.29123694 0.23910901 prediction 0.649523893123532 Functional Loss - POP7 ENSG00000172336 CDS Human protein_coding chr7:100304458 chr7:100304462 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_51581 0 0 1 0 1 Cytosol 0.500231643921065 0.500231643921093 0 0 hm5C_site_46933 DeepMRMD:0;iRNA_m5C:0 46934 chr2 130737709 130737709 1 + C A KIRC 130737712 - 130737692 130737732 41 TTGAATTTCCTCAGCGGATTCCCGAAGTCTCCGCCCGCGGA TTGAATTTCCTCAGCGGATTCCCTAAGTCTCCGCCCGCGGA < 41bp 0.855250116971504 0.530530582289174 0.6363834 0.1593777 prediction 0.64943906936466 Functional Loss - RAB6C ENSG00000222014 CDS Human protein_coding chr2:130737712 chr2:130737709 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_51582 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.2727668 0 hm5C_site_46934 DeepMRMD:0.2727668;iRNA_m5C:0 46935 chr22 32779779 32779779 1 + G T rs56870764 32779776 + 32779756 32779796 41 CTAAGCGTGTGCAGTATCTACAGGGGACACCAAACAATGAG CTAAGCGTGTGCAGTATCTACAGTGGACACCAAACAATGAG < 41bp 0.84900891271097 0.524299338112324 0.84096277 0.055189103 prediction 0.649419149197292 Functional Loss - LOC339666 ENSG00000230736;ENSG00000241954 ncRNA_exonic Human other chr22:32779776 chr22:32779779 . . 0 24 hm5C_associated_SNPs_51583 0 0 0 0 0 unknown 0.500231644189718 0.500231644071045 0.68192554 2.37346142739625e-10 hm5C_site_46935 DeepMRMD:0.68192554;iRNA_m5C:2.37346142739625e-10 46936 chr14 23512080 23512080 1 + G T UCEC 23512077 + 23512057 23512097 41 CCGTGGCCCACGCCACCCACCGTGATGCCTATTCAGGGGGC CCGTGGCCCACGCCACCCACCGTTATGCCTATTCAGGGGGC < 41bp 0.824693883654565 0.466428012746338 0.3254048 0.10350272 prediction 0.64938776730913 Functional Loss - PSMB11 ENSG00000222028 CDS Human protein_coding chr14:23512077 chr14:23512080 nonsynonymous SNV 0.906 4 24 hm5C_associated_SNPs_51584 0 0 0 0 0 exosome 0.500231621466842 0.500231643921092 0 0 hm5C_site_46936 DeepMRMD:0;iRNA_m5C:0 46937 chrX 101909023 101909023 1 + G T LUAD 101909020 + 101909000 101909040 41 GAATAAGTCCAAGGTTATGCCTGGAGCAAGCACCAAAGTTG GAATAAGTCCAAGGTTATGCCTGTAGCAAGCACCAAAGTTG < 41bp 0.824687707277194 0.473246125977902 0.48020825 0.2738889 prediction 0.649375414554389 Functional Loss - GPRASP1 ENSG00000198932 CDS Human protein_coding chrX:101909020 chrX:101909023 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_51585 0 0 0 0 0 Cytosol 0.500231905775266 0.500231657146856 0 4.97256820830572e-07 hm5C_site_46937 DeepMRMD:0;iRNA_m5C:4.97256820830572e-07 46938 chr3 119459492 119459492 1 + A C LUSC 119459488 + 119459468 119459508 41 GAAAAGCTGGTGAAAAAAGCCGAGAAGCAAGTGACCCTGGC GAAAAGCTGGTGAAAAAAGCCGAGCAGCAAGTGACCCTGGC < 41bp 0.871000146946111 0.546329847306465 0.8570236 0.52721465 prediction 0.649340599279293 Functional Loss - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119459488 chr3:119459492 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_51586 0 0 0 0 2 exosome 0.500231643980968 0.500231643932869 0.6596179 9.61988266823255e-11 hm5C_site_46938 DeepMRMD:0.6596179;iRNA_m5C:9.61988266823255e-11 46939 chr9 34971493 34971493 1 + G T LUSC 34971490 + 34971470 34971510 41 AAGGAAGCAGAAGCAGGAACCTCGGTGGTCCAGGAAGAGAG AAGGAAGCAGAAGCAGGAACCTCTGTGGTCCAGGAAGAGAG < 41bp 0.824667282187852 0.45972344956657 0.8194717 0.5667287 prediction 0.649334564375704 Functional Loss - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34971490 chr9:34971493 synonymous SNV . 0 24 hm5C_associated_SNPs_51587 0 0 0 0 0 exosome 0.500231643921122 0.500231636783122 0.505486 1.42759999377517e-08 hm5C_site_46939 DeepMRMD:0.505486;iRNA_m5C:1.42759999377517e-08 Amyotrophic Lateral Sclerosis (ALS) 46940 chr11 4903652 4903652 1 + G T LUAD 4903649 + 4903629 4903669 41 CTGTGTCTTTTCATGGGGGTCACGAGCTTTCCCATCCATTT CTGTGTCTTTTCATGGGGGTCACTAGCTTTCCCATCCATTT < 41bp 0.824652229635545 0.477556109471326 0.22390696 0.029611886 prediction 0.649304459271089 Functional Loss - OR51T1 ENSG00000176900 CDS Human protein_coding chr11:4903649 chr11:4903652 stopgain 0.493 1 24 hm5C_associated_SNPs_51588 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_46940 DeepMRMD:0;iRNA_m5C:0 46941 chr21 47406575 47406575 1 + G T COAD 47406572 + 47406552 47406592 41 CACCTGGGCGTCAAAGTCTTCTCGGTGGCCATCACACCCGA CACCTGGGCGTCAAAGTCTTCTCTGTGGCCATCACACCCGA < 41bp 0.859251744968109 0.534619601230039 0.36916983 0.3310238 prediction 0.649264287476139 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47406572 chr21:47406575 synonymous SNV . 0 24 hm5C_associated_SNPs_51589 0 0 0 0 1 exosome 0.500231643239529 0.500231643921541 0 0 hm5C_site_46941 DeepMRMD:0;iRNA_m5C:0 46942 chr3 186459803 186459803 1 + G T UCEC 186459800 + 186459780 186459820 41 CTACACCTTCTGCACAGACACAAGAGAAGACAGAAGGGCCA CTACACCTTCTGCACAGACACAATAGAAGACAGAAGGGCCA < 41bp 0.847536468072125 0.522915176272723 0.2559731 0.18981081 prediction 0.649242583598804 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186459800 chr3:186459803 stopgain 0.832 0 24 hm5C_associated_SNPs_51590 0 0 0 0 0 Cytosol 0.500231644011075 0.500230746375376 0 1.79527139776425e-06 hm5C_site_46942 DeepMRMD:0;iRNA_m5C:1.79527139776425e-06 46943 chr16 89293860 89293860 1 + G T SARC 89293857 + 89293837 89293877 41 AATGAGCATGGAAAAACTCACACGAGGGAGAAGCCCTTTGC AATGAGCATGGAAAAACTCACACTAGGGAGAAGCCCTTTGC < 41bp 0.85231859572018 0.527730135117797 0.1478655 0.050491333 prediction 0.649176921204767 Functional Loss - ZNF778 ENSG00000170100 CDS Human protein_coding chr16:89293857 chr16:89293860 synonymous SNV . 0 24 hm5C_associated_SNPs_51591 0 0 0 0 0 chromatin 0.500231643921983 0.500231643921092 0 1.7803536422889e-12 hm5C_site_46943 DeepMRMD:0;iRNA_m5C:1.7803536422889e-12 46944 chr15 41191388 41191388 1 + G T COAD 41191385 + 41191365 41191405 41 AGCAGCACGGAGGTCCTCTACGTGAACCGAAATGGACAGAA AGCAGCACGGAGGTCCTCTACGTTAACCGAAATGGACAGAA < 41bp 0.824578821194865 0.471906059570325 0.2767216 0.24205303 prediction 0.64915764238973 Functional Loss - VPS18 ENSG00000104142 CDS Human protein_coding chr15:41191385 chr15:41191388 synonymous SNV . 0 24 hm5C_associated_SNPs_51592 0 0 0 0 1 chromatin 0.500231643921107 0.500231643921093 0 2.66453525910038e-14 hm5C_site_46944 DeepMRMD:0;iRNA_m5C:2.66453525910038e-14 46945 chr1 150305566 150305566 1 + A C STAD 150305562 + 150305542 150305582 41 TGAGAAGGCAAGGAAAGCAGCTGAACTGCAAGCTCGAATCC TGAGAAGGCAAGGAAAGCAGCTGACCTGCAAGCTCGAATCC < 41bp 0.824576432807378 0.429983948191137 0.65568423 0.3691994 prediction 0.649152865614756 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150305562 chr1:150305566 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_51593 0 0 1 0 0 Nucleus 0.500232347165494 0.500231407552014 0.31136846 1.87922696026632e-06 hm5C_site_46945 DeepMRMD:0.31136846;iRNA_m5C:1.87922696026632e-06 46946 chr13 108922545 108922545 1 + G T UCEC 108922542 + 108922522 108922562 41 AGGAGCAGGAGCCCCCAAGGCCGGCCTGGAGGAAGCTCCAG AGGAGCAGGAGCCCCCAAGGCCGTCCTGGAGGAAGCTCCAG < 41bp 0.857319763190183 0.532747746668703 0.31453428 0.2970717 prediction 0.64914403304296 Functional Loss - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108922542 chr13:108922545 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51594 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921093 0 0 hm5C_site_46946 DeepMRMD:0;iRNA_m5C:0 46947 chr2 242089110 242089110 1 + C A rs3806600 242089113 - 242089093 242089133 41 CGCTACTCACCCATTTTGATCGCGAGTCGGGAGGAAACCGC CGCTACTCACCCATTTTGATCGCTAGTCGGGAGGAAACCGC < 41bp 0.825713104498223 0.501141546508802 0.9275282 0.31561956 prediction 0.649143115978842 Functional Loss - PASK;PPP1R7 ENSG00000115685;ENSG00000115687 UTR5 Human other chr2:242089113 chr2:242089110 . . 0 24 hm5C_associated_SNPs_51595 0 0 0 0 1 unknown 0.500231606665435 0.500231642405964 0.8550564 0 hm5C_site_46947 DeepMRMD:0.8550564;iRNA_m5C:0 46948 chr16 57731941 57731941 1 + G T LUAD 57731938 + 57731918 57731958 41 GGCCGAGTGGGCTGAATGGGCGAGGATGGAGAAAATGATGA GGCCGAGTGGGCTGAATGGGCGATGATGGAGAAAATGATGA < 41bp 0.874990091715712 0.550419117787291 0.71170276 0.30668804 prediction 0.649141947856842 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57731938 chr16:57731941 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_51596 0 0 0 0 0 cytosol 0.500231643921092 0.500231644013229 0.42340552 0 hm5C_site_46948 DeepMRMD:0.42340552;iRNA_m5C:0 46949 chr20 20007548 20007548 1 + A C COAD 20007544 + 20007524 20007564 41 CTGCTAAACTTATGGAGTTACTAGAGGAGATTTCAGAAAGG CTGCTAAACTTATGGAGTTACTAGCGGAGATTTCAGAAAGG < 41bp 0.824568257807812 0.43939640075436 0.54812145 0.13945311 prediction 0.649136515615624 Functional Loss - NAA20 ENSG00000173418 CDS Human protein_coding chr20:20007544 chr20:20007548 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_51597 0 0 1 0 1 Ribosome 0.500231643921118 0.500231643924423 0.0962429 0 hm5C_site_46949 DeepMRMD:0.0962429;iRNA_m5C:0 46950 chr1 243449654 243449654 1 + A C HNSC 243449650 + 243449630 243449670 41 GCTCCAGCAACAGCTAAAATCTCAAAGACAAGAGGAGACAC GCTCCAGCAACAGCTAAAATCTCACAGACAAGAGGAGACAC < 41bp 0.824558578049774 0.417431406785151 0.84435093 0.26331705 prediction 0.649117156099548 Functional Loss - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243449650 chr1:243449654 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_51598 0 0 1 0 1 chromatin 0.500231665656097 0.500233347496296 0.68870186 0 hm5C_site_46950 DeepMRMD:0.68870186;iRNA_m5C:0 46951 chr1 156316575 156316575 1 + G T UCEC 156316572 + 156316552 156316592 41 TCTGGAGTTGATCACAAGCCCAAGGAATGCCTAGGACTCCT TCTGGAGTTGATCACAAGCCCAATGAATGCCTAGGACTCCT < 41bp 0.824552773092083 0.454676698824482 0.37473375 0.14368051 prediction 0.649105546184166 Functional Loss - TSACC ENSG00000163467 CDS Human protein_coding chr1:156316572 chr1:156316575 stopgain 0.993 1 24 hm5C_associated_SNPs_51599 0 0 0 0 1 chromatin 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_46951 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 46952 chr11 126176481 126176481 1 + G T LUAD 126176478 + 126176458 126176498 41 CCCACAGGTGAATGAGGCCTCTGGGGATGGGGATGGAGAGG CCCACAGGTGAATGAGGCCTCTGTGGATGGGGATGGAGAGG < 41bp 0.870723478925862 0.546184234809554 0.88600767 0.4980852 prediction 0.649078488232616 Functional Loss - DCPS ENSG00000110063 CDS Human protein_coding chr11:126176478 chr11:126176481 nonsynonymous SNV 0.101 1 24 hm5C_associated_SNPs_51600 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643984247 0.77201534 0 hm5C_site_46952 DeepMRMD:0.77201534;iRNA_m5C:0 46953 chr2 69045122 69045122 1 + G T LUAD 69045119 + 69045099 69045139 41 GTCGAAGACCCTGCCGTGATCATGAGAGGTATGGCTGGTCC GTCGAAGACCCTGCCGTGATCATTAGAGGTATGGCTGGTCC < 41bp 0.824538073883637 0.463380847113797 0.57610154 0.10942221 prediction 0.649076147767275 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69045119 chr2:69045122 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51601 0 0 0 1 0 chromatin 0.500231643921087 0.500231643921092 0.15220308 0 hm5C_site_46953 DeepMRMD:0.15220308;iRNA_m5C:0 46954 chr8 99161225 99161225 1 + G T OV 99161222 + 99161202 99161242 41 AAGGGCTGGGGCATGGCTTTCTGGATTCCATTTGTAAGTTA AAGGGCTGGGGCATGGCTTTCTGTATTCCATTTGTAAGTTA < 41bp 0.838957782222351 0.514442483476794 0.38987797 0.12698242 prediction 0.649030597491115 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99161222 chr8:99161225 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51602 0 0 0 0 1 Mitochondrion 0.500231643921092 0.500231643920895 0 3.94795307556706e-13 hm5C_site_46954 DeepMRMD:0;iRNA_m5C:3.94795307556706e-13 46955 chr20 30584346 30584346 1 + A C COAD 30584342 + 30584322 30584362 41 GCCTCCCTCGTGTCTCTGGCCTGGACGCTGGCCTCCTACCA GCCTCCCTCGTGTCTCTGGCCTGGCCGCTGGCCTCCTACCA < 41bp 0.876788510866918 0.552275263344383 0.29834634 0.18777531 prediction 0.64902649504507 Functional Loss - XKR7 ENSG00000260903 CDS Human protein_coding chr20:30584342 chr20:30584346 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_51603 0 0 0 0 1 exosome 0.50023240069391 0.500232917263437 0 0 hm5C_site_46955 DeepMRMD:0;iRNA_m5C:0 46956 chr1 248059676 248059676 1 + G T LUAD 248059673 + 248059653 248059693 41 CATCTACATGTACATGCAGCCAGGAGCCAGTTCTTCCCAGG CATCTACATGTACATGCAGCCAGTAGCCAGTTCTTCCCAGG < 41bp 0.858638600657988 0.534147178281669 0.8882248 0.034511715 prediction 0.648982844752638 Functional Loss - OR2W3 ENSG00000238243 CDS Human protein_coding chr1:248059673 chr1:248059676 nonsynonymous SNV 0.014 3 24 hm5C_associated_SNPs_51604 0 0 0 0 0 exosome 0.500231643921375 0.500231644833372 0.7764496 0 hm5C_site_46956 DeepMRMD:0.7764496;iRNA_m5C:0 46957 chr18 77805903 77805903 1 + G T UCEC 77805900 + 77805880 77805920 41 AGGAGGAAAGATAAAGGGCTCGGGGGCCTGGTGTGGCAGGG AGGAGGAAAGATAAAGGGCTCGGTGGCCTGGTGTGGCAGGG < 41bp 0.824483153085988 0.464689095592612 0.907303 0.40730113 prediction 0.648966306171977 Functional Loss - RBFA ENSG00000101546 CDS Human protein_coding chr18:77805900 chr18:77805903 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_51605 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.814606 0 hm5C_site_46957 DeepMRMD:0.814606;iRNA_m5C:0 46958 chr4 15565120 15565120 1 + A C rs148194457 15565116 + 15565096 15565136 41 GTGAACATTGTGCGAGCTTACGACATTCCAGTGAGGAAGCC GTGAACATTGTGCGAGCTTACGACCTTCCAGTGAGGAAGCC < 41bp 0.82447791564607 0.44681598321059 0.1606321 0.11775184 prediction 0.64895583129214 Functional Loss - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15565116 chr4:15565120 nonsynonymous SNV 0.098 2 25 hm5C_associated_SNPs_51606 0 0 0 3 1 Nucleus 0.500231500844729 0.500231456457999 0 8.87734592502909e-08 hm5C_site_46958 DeepMRMD:0;iRNA_m5C:8.87734592502909e-08 46959 chr10 27459029 27459029 1 + A C UCEC 27459025 + 27459005 27459045 41 CATAACAGCAGTGCCCTTCCCACCACTGGACGCTCTTGTGT CATAACAGCAGTGCCCTTCCCACCCCTGGACGCTCTTGTGT < 41bp 0.824476463170211 0.414640816677829 0.13331759 0.12695137 prediction 0.648952926340422 Functional Loss - MASTL ENSG00000120539 CDS Human protein_coding chr10:27459025 chr10:27459029 nonsynonymous SNV 0.022 0 25 hm5C_associated_SNPs_51607 0 0 1 0 0 Cytosol 0.500231638688898 0.500231643921092 0 0 hm5C_site_46959 DeepMRMD:0;iRNA_m5C:0 46960 chr1 55145629 55145629 1 + G T ESCA 55145627 + 55145607 55145647 41 TCCAGGAGCCTCGGGCCCGCCAGGTGGCCCTGCTGCCCGTC TCCAGGAGCCTCGGGCCCGCCATGTGGCCCTGCTGCCCGTC < 41bp 0.824471274300768 0.494329799649399 0.93869185 0.36332244 prediction 0.648942548601535 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55145627 chr1:55145629 nonsynonymous SNV 0.878 0 23 hm5C_associated_SNPs_51608 0 0 0 0 2 exosome 0.500231643921093 0.500231643921092 0.8773837 4.44089209850063e-16 hm5C_site_46960 DeepMRMD:0.8773837;iRNA_m5C:4.44089209850063e-16 46961 chr2 234627484 234627484 1 + G T rs529035115 234627481 + 234627461 234627501 41 GCTGAGATGGCCAGAGGACTCCAGGTTCCCCTGCCGCGGCT GCTGAGATGGCCAGAGGACTCCATGTTCCCCTGCCGCGGCT < 41bp 0.82444959248898 0.477858708668047 0.89070773 0.3830487 prediction 0.648899184977961 Functional Loss - UGT1A4 ENSG00000244474 CDS Human protein_coding chr2:234627481 chr2:234627484 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_51609 0 0 0 0 0 exosome 0.500231643921095 0.500231643921092 0.78141546 5.10702591327572e-15 hm5C_site_46961 DeepMRMD:0.78141546;iRNA_m5C:5.10702591327572e-15 46962 chr9 126777416 126777416 1 + G T COAD 126777414 + 126777394 126777434 41 CCTACAGGCGCTTCTCTGTGCAGCGCTGCGCCCGCTGCCAC CCTACAGGCGCTTCTCTGTGCATCGCTGCGCCCGCTGCCAC < 41bp 0.826465831390606 0.502021182927132 0.8841233 0.3841064 prediction 0.648889296926947 Functional Loss - LHX2 ENSG00000106689 CDS Human protein_coding chr9:126777414 chr9:126777416 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_51610 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643919584 0.7682466 3.01669800251148e-12 hm5C_site_46962 DeepMRMD:0.7682466;iRNA_m5C:3.01669800251148e-12 46963 chr2 177054838 177054838 1 + G T LUAD 177054835 + 177054815 177054855 41 CCACTAAGTTTATCAAGAACCCCGGCAGCCCTTCTCAGTCC CCACTAAGTTTATCAAGAACCCCTGCAGCCCTTCTCAGTCC < 41bp 0.824440745819322 0.466841680296876 0.08367497 0.03591749 prediction 0.648881491638643 Functional Loss - HOXD1 ENSG00000128645 CDS Human protein_coding chr2:177054835 chr2:177054838 nonsynonymous SNV 0.022 3 24 hm5C_associated_SNPs_51611 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0 0 hm5C_site_46963 DeepMRMD:0;iRNA_m5C:0 46964 chr6 134210685 134210685 1 + G T UCEC 134210682 + 134210662 134210702 41 AACTGCGAGAATGGGTCTCCCCAGAAGGGCCGCGGCGGCCT AACTGCGAGAATGGGTCTCCCCATAAGGGCCGCGGCGGCCT < 41bp 0.866747160900279 0.542311232903644 0.24761948 0.21142265 prediction 0.64887185599327 Functional Loss - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134210682 chr6:134210685 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_51612 0 0 0 0 0 exosome 0.50023164392235 0.500231643921092 0 2.51532128459075e-12 hm5C_site_46964 DeepMRMD:0;iRNA_m5C:2.51532128459075e-12 46965 chrX 30260507 30260507 1 + G T UCEC 30260504 + 30260484 30260524 41 ACTGGATCTGATAAAGGCGACGAGAGCCAAGATGAGGAAAA ACTGGATCTGATAAAGGCGACGATAGCCAAGATGAGGAAAA < 41bp 0.84504530669159 0.520625617897396 0.5515729 0.13425416 prediction 0.64883937758839 Functional Loss - MAGEB4 ENSG00000120289 CDS Human protein_coding chrX:30260504 chrX:30260507 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_51613 0 0 0 0 0 Nucleus 0.500231643920963 0.500231643921092 0.1031458 0 hm5C_site_46965 DeepMRMD:0.1031458;iRNA_m5C:0 46966 chr12 81101649 81101649 1 + G T UCEC 81101646 + 81101626 81101666 41 CCTGCCAGGACCAAATGCCCCCGGAAGCGGGGAGCGACAGC CCTGCCAGGACCAAATGCCCCCGTAAGCGGGGAGCGACAGC < 41bp 0.859546824837427 0.535130192910287 0.118397385 0.015951872 prediction 0.64883326385428 Functional Loss - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81101646 chr12:81101649 stopgain 0.998 1 24 hm5C_associated_SNPs_51614 0 0 0 0 0 unknown 0.500231643162607 0.500231643921092 0 0 hm5C_site_46966 DeepMRMD:0;iRNA_m5C:0 46967 chr5 143586317 143586317 1 + G T UCEC 143586314 + 143586294 143586334 41 ACTGTAGTCGTTATTATCCTCGAGAACAAGGGTCCGCAGTT ACTGTAGTCGTTATTATCCTCGATAACAAGGGTCCGCAGTT < 41bp 0.824415362331032 0.486961205105969 0.41618723 0.09339255 prediction 0.648830724662063 Functional Loss - KCTD16 ENSG00000183775 CDS Human protein_coding chr5:143586314 chr5:143586317 stopgain 0.967 0 24 hm5C_associated_SNPs_51615 0 0 1 0 0 exosome 0.500231643921096 0.500231643921092 0 7.54951656745106e-15 hm5C_site_46967 DeepMRMD:0;iRNA_m5C:7.54951656745106e-15 46968 chr12 54394087 54394087 1 + A C rs569699265 54394083 + 54394063 54394103 41 ACCGGGGCTCATCCCGCCGCCGCCAGACCCAGCGGTTTGGT ACCGGGGCTCATCCCGCCGCCGCCCGACCCAGCGGTTTGGT < 41bp 0.824389844845815 0.429663512458341 0.6027192 0.041558176 prediction 0.64877968969163 Functional Loss - HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54394083 chr12:54394087 synonymous SNV . 0 25 hm5C_associated_SNPs_51616 0 0 0 0 0 chromatin 0.500231615583247 0.500240126420721 0.2054384 0 hm5C_site_46968 DeepMRMD:0.2054384;iRNA_m5C:0 46969 chr5 23521247 23521247 1 + G T LUSC 23521244 + 23521224 23521264 41 TCAGAAACCAGTGTCCCCTTCTGGAGAAGCAAGTACCTCTG TCAGAAACCAGTGTCCCCTTCTGTAGAAGCAAGTACCTCTG < 41bp 0.865281681889778 0.540891838436834 0.4713764 0.2787069 prediction 0.64877968690589 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23521244 chr5:23521247 nonsynonymous SNV 0.041 2 24 hm5C_associated_SNPs_51617 0 0 0 0 1 unknown 0.500231630491792 0.500231643921663 0 0 hm5C_site_46969 DeepMRMD:0;iRNA_m5C:0 46970 chr19 15852781 15852781 1 + G T UCEC 15852778 + 15852758 15852798 41 TTGAAGTTGGCCTGTGGGAGCAAGACATCATCTGTCATCAT TTGAAGTTGGCCTGTGGGAGCAATACATCATCTGTCATCAT < 41bp 0.857364182899243 0.532974380062918 0.36286345 0.45581108 prediction 0.64877960567265 Functional Loss - OR10H3 ENSG00000171936 CDS Human protein_coding chr19:15852778 chr19:15852781 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51618 0 0 0 0 0 unknown 0.500231643922441 0.500231643922037 0 8.08908495741889e-13 hm5C_site_46970 DeepMRMD:0;iRNA_m5C:8.08908495741889e-13 46971 chr5 147661765 147661765 1 + G T OV 147661762 + 147661742 147661782 41 GCCTCAAATGGCCACACTTTCCAGAATGAGTGTTTCTTTTG GCCTCAAATGGCCACACTTTCCATAATGAGTGTTTCTTTTG < 41bp 0.824374967238383 0.486707990914304 0.3405922 0.117449164 prediction 0.648749934476765 Functional Loss - SPINK13 ENSG00000214510 CDS Human protein_coding chr5:147661762 chr5:147661765 nonsynonymous SNV 0.834 2 24 hm5C_associated_SNPs_51619 0 0 1 0 2 nucleus 0.500229162054718 0.500212654018234 0 3.30160729675733e-05 hm5C_site_46971 DeepMRMD:0;iRNA_m5C:3.30160729675733e-05 46972 chr13 100518635 100518635 1 + G T UCEC 100518632 + 100518612 100518652 41 AGCTGGGCTGCTTAGACAGTCACGAGAAGGAGCCGCCATGG AGCTGGGCTGCTTAGACAGTCACTAGAAGGAGCCGCCATGG < 41bp 0.85732235932599 0.532950084478513 0.4617489 0.27807882 prediction 0.648744549694954 Functional Loss - CLYBL ENSG00000125246 CDS Human protein_coding chr13:100518632 chr13:100518635 nonsynonymous SNV 0.170 1 24 hm5C_associated_SNPs_51620 0 0 1 0 0 Ribosome 0.500231643921431 0.500231643921092 0 6.76791955811495e-13 hm5C_site_46972 DeepMRMD:0;iRNA_m5C:6.76791955811495e-13 46973 chr2 128408430 128408430 1 + G T LIHC 128408427 + 128408407 128408447 41 TGTTCGCCTCCTTCTACCTTCTGGATTTTATCCTGGCTTTA TGTTCGCCTCCTTCTACCTTCTGTATTTTATCCTGGCTTTA < 41bp 0.824367803684328 0.461604166698373 0.31771076 0.13813394 prediction 0.648735607368656 Functional Loss - GPR17 ENSG00000144230 CDS Human protein_coding chr2:128408427 chr2:128408430 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_51621 0 0 0 0 0 Endoplasmic reticulum 0.500231653287859 0.5002316439171 0 1.874151878134e-08 hm5C_site_46973 DeepMRMD:0;iRNA_m5C:1.874151878134e-08 46974 chr13 31835151 31835151 1 + G T UCEC 31835148 + 31835128 31835168 41 ATTCACCATTATGCCTTTTCCGAGAATCCTACAGTTTTTAA ATTCACCATTATGCCTTTTCCGATAATCCTACAGTTTTTAA < 41bp 0.824360873144008 0.481357080398039 0.74195457 0.16376388 prediction 0.648721746288017 Functional Loss - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31835148 chr13:31835151 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_51622 0 0 1 0 2 Ribosome 0.500231643919258 0.500231643904486 0.48390914 2.95441449083e-11 hm5C_site_46974 DeepMRMD:0.48390914;iRNA_m5C:2.95441449083e-11 46975 chr1 101705689 101705689 1 + G T UCEC 101705686 + 101705666 101705706 41 GGAAACGTCAACTCTTCTTCCTAGAACTGGAAGCTGTCCAC GGAAACGTCAACTCTTCTTCCTATAACTGGAAGCTGTCCAC < 41bp 0.85867531233227 0.534322502667227 0.13559636 0.16197267 prediction 0.648705619330086 Functional Loss - S1PR1 ENSG00000170989 CDS Human protein_coding chr1:101705686 chr1:101705689 stoploss 0.171 0 24 hm5C_associated_SNPs_51623 0 0 0 0 0 Endoplasmic reticulum 0.500231643920561 0.500231604364481 0 7.91121590459909e-08 hm5C_site_46975 DeepMRMD:0;iRNA_m5C:7.91121590459909e-08 46976 chr19 4318467 4318467 1 + G T THYM 4318464 + 4318444 4318484 41 AAGGCTCGCGAGAAAGATGGCAAGGGGCGGACGGCGTCTCC AAGGCTCGCGAGAAAGATGGCAATGGGCGGACGGCGTCTCC < 41bp 0.824346902450111 0.450447990290109 0.8840389 0.8558508 prediction 0.648693804900223 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4318464 chr19:4318467 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_51624 0 0 0 0 1 cytosol 0.500231643921092 0.500231643919465 0.0563761999999999 3.25561799741081e-12 hm5C_site_46976 DeepMRMD:0.0563761999999999;iRNA_m5C:3.25561799741081e-12 46977 chr7 150737658 150737658 1 + G T STAD 150737655 + 150737635 150737675 41 GAACCCCTGCATCCCACTGTCTGGGGGCTGCTGCGTCCCCA GAACCCCTGCATCCCACTGTCTGTGGGCTGCTGCGTCCCCA < 41bp 0.873393994863394 0.549086409037568 0.88437873 0.28074855 prediction 0.64861517165165 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737655 chr7:150737658 nonsynonymous SNV 0.719 2 24 hm5C_associated_SNPs_51625 0 0 0 0 3 Ribosome 0.500231643989601 0.500231643921157 0.76875746 1.36888056445628e-10 hm5C_site_46977 DeepMRMD:0.76875746;iRNA_m5C:1.36888056445628e-10 46978 chr17 79202877 79202877 1 + C A UCEC 79202880 - 79202860 79202900 41 CCTTGTTTGCTGGCATGGAGCTGGTGGCCTGTCCCCGCCTG CCTTGTTTGCTGGCATGGAGCTGTTGGCCTGTCCCCGCCTG < 41bp 0.867638312465084 0.543345572529388 0.44397962 0.18830508 prediction 0.648585479871392 Functional Loss - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79202880 chr17:79202877 nonsynonymous SNV 0.898 3 24 hm5C_associated_SNPs_51626 0 0 1 0 0 chromatin 0.500231643921255 0.500231643921093 0 3.25295346215171e-13 hm5C_site_46978 DeepMRMD:0;iRNA_m5C:3.25295346215171e-13 46979 chr17 32957170 32957170 1 + G T LUSC 32957167 + 32957147 32957187 41 TCTGACAATGAAGACATCATCAAGGTGGGCATCCTGGAGGT TCTGACAATGAAGACATCATCAATGTGGGCATCCTGGAGGT < 41bp 0.824288587716428 0.462068399017701 0.8898511 0.34741503 prediction 0.648577175432856 Functional Loss - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32957167 chr17:32957170 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_51627 0 0 1 0 1 exosome 0.500214203435849 0.500231643921067 0.7797022 0 hm5C_site_46979 DeepMRMD:0.7797022;iRNA_m5C:0 46980 chr13 49281421 49281421 1 + G T UCEC 49281418 + 49281398 49281438 41 GTCACCAGCATCAGGAGTGCCTGGATCCTCTGTGGGATCAT GTCACCAGCATCAGGAGTGCCTGTATCCTCTGTGGGATCAT < 41bp 0.860375112846209 0.536091441273783 0.7296105 0.269899 prediction 0.648567343144852 Functional Loss - CYSLTR2 ENSG00000152207 CDS Human protein_coding chr13:49281418 chr13:49281421 nonsynonymous SNV 0.901 1 24 hm5C_associated_SNPs_51628 0 0 0 0 0 exosome 0.500233748449157 0.500233111817545 0.459221 1.27326322418853e-06 hm5C_site_46980 DeepMRMD:0.459221;iRNA_m5C:1.27326322418853e-06 46981 chr8 22438915 22438915 1 + G T UCEC 22438912 + 22438892 22438932 41 GTGGCCGAGCGGGGCAAAGCCAAGGACGCTGACCTCCGGCC GTGGCCGAGCGGGGCAAAGCCAATGACGCTGACCTCCGGCC < 41bp 0.881517160072752 0.557249969845703 0.89631736 0.36422247 prediction 0.648534380454098 Functional Loss - PDLIM2 ENSG00000120913 CDS Human protein_coding chr8:22438912 chr8:22438915 nonsynonymous SNV 0.078 0 24 hm5C_associated_SNPs_51629 0 0 0 0 1 Nucleus 0.500231623989524 0.500231772415181 0.79263472 0 hm5C_site_46981 DeepMRMD:0.79263472;iRNA_m5C:0 46982 chr7 1273324 1273324 1 + G T HNSC 1273321 + 1273301 1273341 41 GCGCCTAGACCTGGTCGAGTCCCGAGTTCAGGTAAAGACCC GCGCCTAGACCTGGTCGAGTCCCTAGTTCAGGTAAAGACCC < 41bp 0.824255826740226 0.487892729247862 0.2951817 0.18473884 prediction 0.648511653480451 Functional Loss - UNCX ENSG00000164853 CDS Human protein_coding chr7:1273321 chr7:1273324 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51630 0 0 0 0 1 exosome 0.500231643918267 0.500231643858001 0 1.2053225084685e-10 hm5C_site_46982 DeepMRMD:0;iRNA_m5C:1.2053225084685e-10 46983 chr13 58208612 58208612 1 + G T HNSC 58208609 + 58208589 58208629 41 GAGATCGACCCGTCCAGCGGCGAGATCCGCACGCTGCACCC GAGATCGACCCGTCCAGCGGCGATATCCGCACGCTGCACCC < 41bp 0.824255368387758 0.46332897815695 0.82989854 0.39944756 prediction 0.648510736775516 Functional Loss - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58208609 chr13:58208612 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51631 0 0 0 0 0 exosome 0.500231902906225 0.500114414461529 0.65979708 0.000234976889392557 hm5C_site_46983 DeepMRMD:0.65979708;iRNA_m5C:0.000234976889392557 46984 chr19 36278998 36278998 1 + G T HNSC 36278995 + 36278975 36279015 41 GTCAACCTAGCTCTAGGGCCCAGGGGTCCCTCACCTGCCTC GTCAACCTAGCTCTAGGGCCCAGTGGTCCCTCACCTGCCTC < 41bp 0.874927440606559 0.550687019524211 0.9507718 0.34567943 prediction 0.648480842164697 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278995 chr19:36278998 nonsynonymous SNV 0.930 1 24 hm5C_associated_SNPs_51632 0 0 1 0 0 chromatin 0.500231643922663 0.500232060476746 0.9015436 0 hm5C_site_46984 DeepMRMD:0.9015436;iRNA_m5C:0 46985 chr1 113392809 113392809 1 + G T UCEC 113392806 + 113392786 113392826 41 GGGAGCCGGCGCTGGGGAGCCGGGCATGGGCTGGGATGTGT GGGAGCCGGCGCTGGGGAGCCGGTCATGGGCTGGGATGTGT < 41bp 0.853234669601786 0.529039441920455 0.8908837 0.6692571 prediction 0.648390455362662 Functional Loss - LINC01356 ENSG00000215866;ENSG00000224167 ncRNA_exonic Human other chr1:113392806 chr1:113392809 . . 0 24 hm5C_associated_SNPs_51633 0 0 0 0 0 unknown 0.500231903749268 0.500231657280024 0.4432532 4.92938487584027e-07 hm5C_site_46985 DeepMRMD:0.4432532;iRNA_m5C:4.92938487584027e-07 46986 chr3 126386080 126386080 1 + G T UCEC 126386077 + 126386057 126386097 41 CCGATGTCCATCTATATCACCTGGATCACCAACCACCAGAA CCGATGTCCATCTATATCACCTGTATCACCAACCACCAGAA < 41bp 0.830912788278893 0.506720607690419 0.24926826 0.079016864 prediction 0.648384361176949 Functional Loss - NUP210P1 ENSG00000198284 ncRNA_exonic Human transcribed_processed_pseudogene chr3:126386077 chr3:126386080 . . 0 24 hm5C_associated_SNPs_51634 0 0 0 0 0 unknown 0.500248295313219 0.500231643921078 0 3.33027842815969e-05 hm5C_site_46986 DeepMRMD:0;iRNA_m5C:3.33027842815969e-05 46987 chr5 140475822 140475822 1 + G T UCEC 140475819 + 140475799 140475839 41 CAGCGCCACAGACAGAGACTCGGGCACCAACGCCCAGGTCA CAGCGCCACAGACAGAGACTCGGTCACCAACGCCCAGGTCA < 41bp 0.824185188053232 0.464980692822485 0.94382757 0.5680327 prediction 0.648370376106464 Functional Loss - PCDHB2 ENSG00000112852 CDS Human protein_coding chr5:140475819 chr5:140475822 nonsynonymous SNV 0.255 3 24 hm5C_associated_SNPs_51635 0 0 0 0 0 exosome 0.500231625617321 0.500232507265433 0.75158974 0 hm5C_site_46987 DeepMRMD:0.75158974;iRNA_m5C:0 46988 chr11 65632610 65632610 1 + G T GBM 65632607 + 65632587 65632627 41 GACTTCAACGCAGGAGCCATCAAGAATAAGGTACTGTCTCT GACTTCAACGCAGGAGCCATCAATAATAAGGTACTGTCTCT < 41bp 0.8501030731828 0.52593751830696 0.53409916 0.25447935 prediction 0.648331109751679 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65632607 chr11:65632610 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_51636 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.06819832 0 hm5C_site_46988 DeepMRMD:0.06819832;iRNA_m5C:0 46989 chr1 229771125 229771125 1 + G T SARC 229771122 + 229771102 229771142 41 CCTGAGCTACTGTCATCCTACAAGGAGGGGCTCTTGGACCA CCTGAGCTACTGTCATCCTACAATGAGGGGCTCTTGGACCA < 41bp 0.824161580428636 0.457468451974778 0.42916238 0.040727615 prediction 0.648323160857271 Functional Loss - URB2 ENSG00000135763 CDS Human protein_coding chr1:229771122 chr1:229771125 nonsynonymous SNV 0.886 3 24 hm5C_associated_SNPs_51637 0 0 1 0 0 Nucleus 0.500231643921093 0.500231643916966 0 8.25273183124864e-12 hm5C_site_46989 DeepMRMD:0;iRNA_m5C:8.25273183124864e-12 46990 chr12 113433136 113433136 1 + G T UCEC 113433133 + 113433113 113433153 41 ATCCCAGCCCCTGGATCTATCGAGAGCTCAAAAGATCCTTG ATCCCAGCCCCTGGATCTATCGATAGCTCAAAAGATCCTTG < 41bp 0.824153141940719 0.464020613472992 0.92762756 0.16491976 prediction 0.648306283881438 Functional Loss - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113433133 chr12:113433136 stopgain 0.560 0 24 hm5C_associated_SNPs_51638 0 0 0 0 1 exosome 0.500231644982632 0.500231643921095 0.85525512 2.12307371683096e-09 hm5C_site_46990 DeepMRMD:0.85525512;iRNA_m5C:2.12307371683096e-09 46991 chr19 44470534 44470534 1 + G T UCEC 44470531 + 44470511 44470551 41 AATGTGGGAAAGCCTTCATTCATGATTCACAGCTTCAAGAA AATGTGGGAAAGCCTTCATTCATTATTCACAGCTTCAAGAA < 41bp 0.8241393452947 0.468724085898664 0.06522301 0.042436033 prediction 0.6482786905894 Functional Loss - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44470531 chr19:44470534 nonsynonymous SNV 0.566 2 24 hm5C_associated_SNPs_51639 0 0 1 0 0 exosome 0.500231643921224 0.500231643903829 0 3.47903927888638e-11 hm5C_site_46991 DeepMRMD:0;iRNA_m5C:3.47903927888638e-11 46992 chr1 63063344 63063344 1 + G T GBM 63063341 + 63063321 63063361 41 TCTATCTCCAGAGCCAAAATCAAGATTTGCTATGTTAGACG TCTATCTCCAGAGCCAAAATCAATATTTGCTATGTTAGACG < 41bp 0.824130140542677 0.492466722655561 0.9363325 0.4651326 prediction 0.648260281085353 Functional Loss - ANGPTL3 ENSG00000132855 CDS Human protein_coding chr1:63063341 chr1:63063344 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51640 0 0 0 0 0 exosome 0.500178480047035 0.500231643921874 0.872665 0 hm5C_site_46992 DeepMRMD:0.872665;iRNA_m5C:0 46993 chr7 148481087 148481087 1 + A C LUAD 148481083 + 148481063 148481103 41 GCTTGTGGTCGCTTCATAAACAACAACGCGGTTACCAAGAT GCTTGTGGTCGCTTCATAAACAACCACGCGGTTACCAAGAT < 41bp 0.824125920267261 0.419435799917741 0.03287986 0.039172143 prediction 0.648251840534523 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148481083 chr7:148481087 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_51641 0 0 1 0 2 Nucleus 0.500231985903385 0.500231643921152 0 6.83964466174913e-07 hm5C_site_46993 DeepMRMD:0;iRNA_m5C:6.83964466174913e-07 46994 chr9 130565267 130565267 1 + A C rs10760502 130565263 + 130565243 130565283 41 CTGGCAGCGGCGTCTGCGCGCGGCATAACGACCCAGGTCGC CTGGCAGCGGCGTCTGCGCGCGGCCTAACGACCCAGGTCGC < 41bp 0.824122624792367 0.487405185744145 0.8731458 0.8510825 prediction 0.648245249584733 Functional Loss - FPGS ENSG00000136877 CDS Human protein_coding chr9:130565263 chr9:130565267 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_51642 0 0 1 0 1 Cytosol 0.500231643775127 0.500231643974112 0.0441266 0 hm5C_site_46994 DeepMRMD:0.0441266;iRNA_m5C:0 46995 chr19 41594917 41594917 1 + G T UCEC 41594914 + 41594894 41594934 41 CTGTGCGGACATGATGCCGTCAAGGAGGCTCTGGTGGACCA CTGTGCGGACATGATGCCGTCAATGAGGCTCTGGTGGACCA < 41bp 0.871849147485816 0.547739838564241 0.8726108 0.16912681 prediction 0.64821861784315 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41594914 chr19:41594917 nonsynonymous SNV 0.245 3 24 hm5C_associated_SNPs_51643 0 0 0 0 2 unknown 0.50023164392109 0.500232220881116 0.7452216 0 hm5C_site_46995 DeepMRMD:0.7452216;iRNA_m5C:0 46996 chr12 5154729 5154729 1 + G T LUAD 5154726 + 5154706 5154746 41 TCTAGCATCCCTGACGCCTTCTGGTGGGCAGTGGTCACCAT TCTAGCATCCCTGACGCCTTCTGTTGGGCAGTGGTCACCAT < 41bp 0.865110102498658 0.541005688546284 0.23642465 0.05807495 prediction 0.648208827904748 Functional Loss - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5154726 chr12:5154729 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51644 0 0 0 0 0 exosome 0.500231643921097 0.500231643921092 0 8.65973959207622e-15 hm5C_site_46996 DeepMRMD:0;iRNA_m5C:8.65973959207622e-15 46997 chr4 25334976 25334976 1 + G T UCEC 25334973 + 25334953 25334993 41 CTCCTTTATCCACTGGAAAACAAGAAGACAAATGCCCAGTA CTCCTTTATCCACTGGAAAACAATAAGACAAATGCCCAGTA < 41bp 0.853247330978013 0.529152649851542 0.3377035 0.13178 prediction 0.648189362252941 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25334973 chr4:25334976 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51645 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_46997 DeepMRMD:0;iRNA_m5C:0 46998 chr1 247587726 247587726 1 + G T LUAD 247587724 + 247587704 247587744 41 CTGACTGGCAGAAGGCCGAGCGGGGAGACATTCTCCTGAGC CTGACTGGCAGAAGGCCGAGCGTGGAGACATTCTCCTGAGC < 41bp 0.824089698545023 0.49599842775189 0.93269074 0.837211 prediction 0.648179397090046 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247587724 chr1:247587726 synonymous SNV . 0 23 hm5C_associated_SNPs_51646 0 0 0 0 0 Nucleus 0.500231644041798 0.500231642096666 0.19095948 3.89026277858306e-09 hm5C_site_46998 DeepMRMD:0.19095948;iRNA_m5C:3.89026277858306e-09 46999 chr10 7839091 7839091 1 + G T KIRC 7839088 + 7839068 7839108 41 GGTAGCGGCAGCAAAATATGCCCGAGCTGAGAGAGAGCTGA GGTAGCGGCAGCAAAATATGCCCTAGCTGAGAGAGAGCTGA < 41bp 0.82408256598157 0.480539385533582 0.07185441 0.03611079 prediction 0.648165131963139 Functional Loss - ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7839088 chr10:7839091 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_51647 0 0 1 0 2 Ribosome 0.500231643921105 0.50023164392127 0 0 hm5C_site_46999 DeepMRMD:0;iRNA_m5C:0 47000 chr1 240370935 240370935 1 + A C OV 240370931 + 240370911 240370951 41 TCTGCCCCCTCTACCCGGAGCGGGAATACCTCCTCCGCCCC TCTGCCCCCTCTACCCGGAGCGGGCATACCTCCTCCGCCCC < 41bp 0.83688343001795 0.512804294566706 0.9289522 0.9248925 prediction 0.648158270902488 Functional Loss - FMN2 ENSG00000155816 CDS Human protein_coding chr1:240370931 chr1:240370935 synonymous SNV . 0 25 hm5C_associated_SNPs_51648 1 0 0 0 0 Endoplasmic reticulum 0.500231643922149 0.500233850440571 0.0081194 0 hm5C_site_47000 DeepMRMD:0.0081194;iRNA_m5C:0 not specified not specified 47001 chr22 38212280 38212280 1 + G T LUAD 38212277 + 38212257 38212297 41 ACCCCATCTGCCCTGTGATGCTGGGTGATGCCCGGCTGGCC ACCCCATCTGCCCTGTGATGCTGTGTGATGCCCGGCTGGCC < 41bp 0.873975744081609 0.54991267523797 0.90917385 0.40657994 prediction 0.648126137687277 Functional Loss - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212277 chr22:38212280 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51649 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921074 0.8183477 3.61932706027801e-14 hm5C_site_47001 DeepMRMD:0.8183477;iRNA_m5C:3.61932706027801e-14 47002 chr11 82874805 82874805 1 + G T LUAD 82874802 + 82874782 82874822 41 CTTTGAAGAAACTTTATGCCCTGGATGTCAGAGTCAATTCA CTTTGAAGAAACTTTATGCCCTGTATGTCAGAGTCAATTCA < 41bp 0.848450509618856 0.524409854698213 0.013187826 0.003939122 prediction 0.648081309841287 Functional Loss - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82874802 chr11:82874805 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51650 0 0 1 0 1 Nucleus 0.50023164105284 0.50023164392112 0 0 hm5C_site_47002 DeepMRMD:0;iRNA_m5C:0 47003 chrX 69424309 69424309 1 + G T LUSC 69424306 + 69424286 69424326 41 ATTTCTGTACCTTCCATGGCCGGGGCTTCACTCGCGGATCC ATTTCTGTACCTTCCATGGCCGGTGCTTCACTCGCGGATCC < 41bp 0.876236743828512 0.552209393904129 0.9329562 0.35077095 prediction 0.648054699848768 Functional Loss - DGAT2L6 ENSG00000184210 CDS Human protein_coding chrX:69424306 chrX:69424309 nonsynonymous SNV 0.064 4 24 hm5C_associated_SNPs_51651 0 0 0 0 1 exosome 0.500233530162149 0.500231643857149 0.8659124 3.7726100012847e-06 hm5C_site_47003 DeepMRMD:0.8659124;iRNA_m5C:3.7726100012847e-06 47004 chr17 16326005 16326005 1 + A C rs1129235 16326001 + 16325981 16326021 41 ATTCTGCCACTGCTGCAGATCGACAGGGACTCTGGCAATCC ATTCTGCCACTGCTGCAGATCGACCGGGACTCTGGCAATCC < 41bp 0.824025931287241 0.430509801094931 0.3385074 0.2628808 prediction 0.648051862574482 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16326001 chr17:16326005 synonymous SNV . 0 25 hm5C_associated_SNPs_51652 0 0 0 0 1 Endoplasmic reticulum 0.500231643920236 0.500231889965152 0 0 hm5C_site_47004 DeepMRMD:0;iRNA_m5C:0 47005 chrX 109697084 109697084 1 + G T COAD 109697081 + 109697061 109697101 41 ACTAATGAGGGCCTCAGGCCCTGGAACAATGTCCACACCAC ACTAATGAGGGCCTCAGGCCCTGTAACAATGTCCACACCAC < 41bp 0.861706686366332 0.537689939118706 0.77183616 0.16696063 prediction 0.648033494495252 Functional Loss - RTL9 ENSG00000243978 CDS Human protein_coding chrX:109697081 chrX:109697084 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_51653 0 0 0 0 0 unknown 0.500231644819538 0.500231643921092 0.54367232 1.79689174650832e-09 hm5C_site_47005 DeepMRMD:0.54367232;iRNA_m5C:1.79689174650832e-09 47006 chr17 4433952 4433952 1 + G T LIHC 4433950 + 4433930 4433970 41 TTCTGGCTGCTGGTCCTGTCCCGGGGGCTGGTGGGCATCGG TTCTGGCTGCTGGTCCTGTCCCTGGGGCTGGTGGGCATCGG < 41bp 0.82933343474286 0.505386008211941 0.9502547 0.43057105 prediction 0.647894853061838 Functional Loss - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4433950 chr17:4433952 nonsynonymous SNV 0.987 4 23 hm5C_associated_SNPs_51654 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.9005094 0 hm5C_site_47006 DeepMRMD:0.9005094;iRNA_m5C:0 47007 chr2 42120857 42120857 1 + G T rs544139775 42120854 + 42120834 42120874 41 TGGGATCTTCCAGGCTTAAACAAGGAGCCCCTTCCAAGGGT TGGGATCTTCCAGGCTTAAACAATGAGCCCCTTCCAAGGGT < 41bp 0.846008272541808 0.52206577378804 0.9030058 0.12150729 prediction 0.647884997507535 Functional Loss - LINC01913 ENSG00000214691 ncRNA_exonic Human lincRNA chr2:42120854 chr2:42120857 . . 0 24 hm5C_associated_SNPs_51655 0 0 0 0 0 unknown 0.500231643921092 0.500231643921095 0.8060116 0 hm5C_site_47007 DeepMRMD:0.8060116;iRNA_m5C:0 47008 chrX 47044595 47044595 1 + G T LUAD 47044592 + 47044572 47044612 41 CAGATGCTGGCTATGCCATCCTCGAGAAGAAGGTGTGTTGG CAGATGCTGGCTATGCCATCCTCTAGAAGAAGGTGTGTTGG < 41bp 0.851424076924452 0.527486198970815 0.7927706 0.90875995 prediction 0.647875755907274 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47044592 chrX:47044595 stopgain 0.988 1 24 hm5C_associated_SNPs_51656 0 0 1 0 1 Ribosome 0.500229781164054 0.50023164369441 0 0 hm5C_site_47008 DeepMRMD:0;iRNA_m5C:0 47009 chr4 57377510 57377510 1 + G T LUAD 57377507 + 57377487 57377527 41 AAGACAGCCAGATGGAGTTCCTGGAGAGTAAGCTCTCTGTT AAGACAGCCAGATGGAGTTCCTGTAGAGTAAGCTCTCTGTT < 41bp 0.850136472986398 0.526207997233877 0.2064951 0.12057653 prediction 0.647856951505041 Functional Loss - ARL9 ENSG00000196503 CDS Human protein_coding chr4:57377507 chr4:57377510 stopgain 1.000 1 24 hm5C_associated_SNPs_51657 0 0 0 0 0 exosome 0.500225706486756 0.500231650460996 0 0 hm5C_site_47009 DeepMRMD:0;iRNA_m5C:0 47010 chr22 50946857 50946857 1 + G T READ 50946854 + 50946834 50946874 41 AGGTGGACGTGGCGGCCCAGCTGGGCGAGTATCTGGAGGAG AGGTGGACGTGGCGGCCCAGCTGTGCGAGTATCTGGAGGAG < 41bp 0.856691340993347 0.532764261688878 0.5676472 0.11043757 prediction 0.647854158608939 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50946854 chr22:50946857 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51658 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921096 0.1352944 0 hm5C_site_47010 DeepMRMD:0.1352944;iRNA_m5C:0 47011 chr22 43520095 43520095 1 + G T UCEC 43520092 + 43520072 43520112 41 CCCTCCTGTATGAGCAGCTCCTGGAACCCCCGACCATGGAG CCCTCCTGTATGAGCAGCTCCTGTAACCCCCGACCATGGAG < 41bp 0.852316189073559 0.528411377896317 0.25151324 0.10830051 prediction 0.647809622354483 Functional Loss - BIK ENSG00000100290 CDS Human protein_coding chr22:43520092 chr22:43520095 stopgain 0.001 0 24 hm5C_associated_SNPs_51659 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47011 DeepMRMD:0;iRNA_m5C:0 47012 chr19 37118056 37118056 1 + G T UCEC 37118053 + 37118033 37118073 41 GAGTGTGGGAAGGCATTTATCCAGAAGACAACCCTCACTGT GAGTGTGGGAAGGCATTTATCCATAAGACAACCCTCACTGT < 41bp 0.857478650784542 0.533576456489215 0.8589318 0.06766677 prediction 0.647804388590653 Functional Loss - ZNF382 ENSG00000161298 CDS Human protein_coding chr19:37118053 chr19:37118056 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51660 0 0 1 0 0 exosome 0.500231643910012 0.500231643727651 0.7178636 3.64721586265659e-10 hm5C_site_47012 DeepMRMD:0.7178636;iRNA_m5C:3.64721586265659e-10 47013 chr17 38445734 38445734 1 + G T LUSC 38445731 + 38445711 38445751 41 TTTTCCAAAAAGGAAGCTGTCTCGGGCATTGAACAAAGCTA TTTTCCAAAAAGGAAGCTGTCTCTGGCATTGAACAAAGCTA < 41bp 0.82388088241717 0.48494489073085 0.08794141 0.04700902 prediction 0.647761764834341 Functional Loss - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38445731 chr17:38445734 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_51661 0 0 1 0 1 Nucleus 0.500231643929833 0.500231643775834 0 3.07998515580721e-10 hm5C_site_47013 DeepMRMD:0;iRNA_m5C:3.07998515580721e-10 47014 chr5 176079789 176079789 1 + G T UCEC 176079787 + 176079767 176079807 41 CTTCTTCCTGGAGCTGGCAACAGGGATCCTGGCCTTTGTCT CTTCTTCCTGGAGCTGGCAACATGGATCCTGGCCTTTGTCT < 41bp 0.829029857050864 0.505154101587059 0.89511555 0.3281683 prediction 0.647751510927609 Functional Loss - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176079787 chr5:176079789 nonsynonymous SNV 0.959 5 23 hm5C_associated_SNPs_51662 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.7902311 0 hm5C_site_47014 DeepMRMD:0.7902311;iRNA_m5C:0 47015 chr10 48371273 48371273 1 + G T UCEC 48371271 + 48371251 48371291 41 GGCTGGAGCATACCCAGGCCCAGGTGCCCCCACCCTCATCA GGCTGGAGCATACCCAGGCCCATGTGCCCCCACCCTCATCA < 41bp 0.829475281608879 0.505601352295454 0.859216 0.03542298 prediction 0.64774785862685 Functional Loss - ZNF488 ENSG00000165388 CDS Human other chr10:48371271 chr10:48371273 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_51663 0 0 0 0 0 exosome 0.500231643917643 0.500231641804418 0.718432 4.22644874653599e-09 hm5C_site_47015 DeepMRMD:0.718432;iRNA_m5C:4.22644874653599e-09 47016 chr6 155450828 155450828 1 + G T SKCM 155450825 + 155450805 155450845 41 ACCCCACCGGGCGAAGACCGCAAGAGCCCCCGAGTGCTCAT ACCCCACCGGGCGAAGACCGCAATAGCCCCCGAGTGCTCAT < 41bp 0.823859360414656 0.472292125553023 0.6711682 0.19475546 prediction 0.647718720829313 Functional Loss - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155450825 chr6:155450828 nonsynonymous SNV 0.236 0 24 hm5C_associated_SNPs_51664 0 0 0 0 0 Cytosol 0.500231643921045 0.500231643948966 0.3423364 0 hm5C_site_47016 DeepMRMD:0.3423364;iRNA_m5C:0 47017 chr5 158695986 158695986 1 + A C UCEC 158695982 + 158695962 158696002 41 GTATTCAGTGACCACACTTTCAGAAGATGATACTGTGCTCG GTATTCAGTGACCACACTTTCAGACGATGATACTGTGCTCG < 41bp 0.868961317022649 0.545107558499819 0.9105872 0.89829665 prediction 0.647707517045661 Functional Loss - UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158695982 chr5:158695986 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_51665 0 0 1 0 1 Cytosol 0.500236475492689 0.500608051164234 0.0245811 0 hm5C_site_47017 DeepMRMD:0.0245811;iRNA_m5C:0 47018 chr11 70449843 70449843 1 + A C rs146269730 70449839 + 70449819 70449859 41 TTTCAGAAAAACTCAAGAGGCGCCAGGAGAATCCCACAGTC TTTCAGAAAAACTCAAGAGGCGCCCGGAGAATCCCACAGTC < 41bp 0.823841785387748 0.463742976594973 0.17934194 0.21532732 prediction 0.647683570775495 Functional Loss - SHANK2 ENSG00000162105 intronic Human protein_coding chr11:70449839 chr11:70449843 . . 0 25 hm5C_associated_SNPs_51666 0 0 0 0 0 cytosol 0.500231643921091 0.500231643921092 0 0 hm5C_site_47018 DeepMRMD:0;iRNA_m5C:0 47019 chr16 28507081 28507081 1 + G T UCEC 28507078 + 28507058 28507098 41 TGCAGGGGAAACTGAGGAGCCTGGGGCCGAAGGGGCTGGGA TGCAGGGGAAACTGAGGAGCCTGTGGCCGAAGGGGCTGGGA < 41bp 0.871993014179811 0.548178021693995 0.89674574 0.5215304 prediction 0.647629984971633 Functional Loss - APOBR ENSG00000184730 CDS Human protein_coding chr16:28507078 chr16:28507081 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_51667 0 0 1 0 0 exosome 0.500324101154092 0.500231643922147 0.75043068 0.000184914463890129 hm5C_site_47019 DeepMRMD:0.75043068;iRNA_m5C:0.000184914463890129 47020 chr22 18604249 18604249 1 + G T UCEC 18604246 + 18604226 18604266 41 TTGCTTCCCTCTCCCCACAGCGGGAATGCATATCAGTCCAC TTGCTTCCCTCTCCCCACAGCGGTAATGCATATCAGTCCAC < 41bp 0.872568594689787 0.548777438570295 0.90359247 0.48434028 prediction 0.647582312238983 Functional Loss - TUBA8 ENSG00000183785;ENSG00000215193 CDS Human other chr22:18604246 chr22:18604249 stopgain 0.973 1 24 hm5C_associated_SNPs_51668 0 0 0 0 1 exosome 0.500231643921092 0.500231643920889 0.80718494 4.06341627012807e-13 hm5C_site_47020 DeepMRMD:0.80718494;iRNA_m5C:4.06341627012807e-13 47021 chr11 125300009 125300009 1 + G T LUAD 125300007 + 125299987 125300027 41 CTGCGGGGGTGCTGCAGCAGCAGGGCGGTGCCCCAGGGACA CTGCGGGGGTGCTGCAGCAGCATGGCGGTGCCCCAGGGACA < 41bp 0.826599130584587 0.502837486846887 0.90928924 0.5331431 prediction 0.6475232874754 Functional Loss - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125300007 chr11:125300009 nonsynonymous SNV 0.621 2 23 hm5C_associated_SNPs_51669 0 0 0 0 1 exosome 0.500231659778565 0.500231307142037 0.75229228 7.05273056622602e-07 hm5C_site_47021 DeepMRMD:0.75229228;iRNA_m5C:7.05273056622602e-07 47022 chr17 30349423 30349423 1 + G T UCEC 30349420 + 30349400 30349440 41 CTGAAGCCACAGTTCAACCTCTGGACCTGGAGCTTAGCATA CTGAAGCCACAGTTCAACCTCTGTACCTGGAGCTTAGCATA < 41bp 0.823757352642926 0.490195232097499 0.43305093 0.2407752 prediction 0.647514705285852 Functional Loss - LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30349420 chr17:30349423 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51670 0 0 0 0 0 chromatin 0.50023252079653 0.500231651763354 0 1.73806635239693e-06 hm5C_site_47022 DeepMRMD:0;iRNA_m5C:1.73806635239693e-06 47023 chr19 36205821 36205821 1 + G T COAD 36205819 + 36205799 36205839 41 AGGCCCCTTCAGGAGGCGGCCAGGGCCTTGGGAGTGCAGTC AGGCCCCTTCAGGAGGCGGCCATGGCCTTGGGAGTGCAGTC < 41bp 0.823742798968131 0.481978623470728 0.9002234 0.82887834 prediction 0.647485597936262 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205819 chr19:36205821 nonsynonymous SNV 0.513 2 23 hm5C_associated_SNPs_51671 0 0 0 1 0 nucleus 0.500231643921167 0.500231644093507 0.14269012 0 hm5C_site_47023 DeepMRMD:0.14269012;iRNA_m5C:0 47024 chr13 46287912 46287912 1 + G T UCEC 46287910 + 46287890 46287930 41 GACAGCACCCTGCAGCTCCTCCGGGAGGAGAATCGCGCGCT GACAGCACCCTGCAGCTCCTCCTGGAGGAGAATCGCGCGCT < 41bp 0.823738852470404 0.49580195436848 0.8946249 0.30366486 prediction 0.647477704940809 Functional Loss - SPERT ENSG00000174015 CDS Human protein_coding chr13:46287910 chr13:46287912 nonsynonymous SNV 0.231 0 23 hm5C_associated_SNPs_51672 0 0 0 0 0 exosome 0.500231643579434 0.500231643743409 0.7892498 0 hm5C_site_47024 DeepMRMD:0.7892498;iRNA_m5C:0 47025 chr11 605169 605169 1 + G T KICH 605166 + 605146 605186 41 GCGCGGACGCTGGGCCTGCGCAGGCCTGTTCACAGCAGCTG GCGCGGACGCTGGGCCTGCGCAGTCCTGTTCACAGCAGCTG < 41bp 0.823737247450177 0.451253762673512 0.8272606 0.3516295 prediction 0.647474494900354 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:605166 chr11:605169 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_51673 0 0 0 0 0 Nucleus 0.500231656737594 0.500231643937699 0.6545212 2.55997896214666e-08 hm5C_site_47025 DeepMRMD:0.6545212;iRNA_m5C:2.55997896214666e-08 47026 chr19 49674973 49674973 1 + G T UCEC 49674970 + 49674950 49674990 41 GAGCCAGGCAAGGCGAAGCCCGAGATCGAATCAGGCGTTTC GAGCCAGGCAAGGCGAAGCCCGATATCGAATCAGGCGTTTC < 41bp 0.823713939638853 0.461685887700571 0.36718696 0.14130145 prediction 0.647427879277706 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49674970 chr19:49674973 nonsynonymous SNV 0.487 2 24 hm5C_associated_SNPs_51674 0 0 1 0 1 chromatin 0.500232102030127 0.500231643921094 0 9.16218064972441e-07 hm5C_site_47026 DeepMRMD:0;iRNA_m5C:9.16218064972441e-07 47027 chr15 40558420 40558420 1 + G T SARC 40558418 + 40558398 40558438 41 GTGCCTCGCAGCGCTGTCTGCAGCTGGGTGCCTGCCTGCAG GTGCCTCGCAGCGCTGTCTGCATCTGGGTGCCTGCCTGCAG < 41bp 0.831338954423895 0.507625257081572 0.37641904 0.14258859 prediction 0.647427394684647 Functional Loss - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40558418 chr15:40558420 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_51675 0 0 0 0 0 unknown 0.498893282120253 0.500231800152801 0 0 hm5C_site_47027 DeepMRMD:0;iRNA_m5C:0 47028 chr20 34526626 34526626 1 + G T LUAD 34526623 + 34526603 34526643 41 TTTGTCCTCTCAACAGAAGCCGGGAGCATCCTGATCTGCCG TTTGTCCTCTCAACAGAAGCCGGTAGCATCCTGATCTGCCG < 41bp 0.860002479884817 0.536291153071287 0.7523564 0.2604158 prediction 0.647422653627059 Functional Loss - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34526623 chr20:34526626 stopgain 1.000 1 24 hm5C_associated_SNPs_51676 0 0 1 0 1 Nucleus 0.500231642967459 0.500231643924084 0.5047128 0 hm5C_site_47028 DeepMRMD:0.5047128;iRNA_m5C:0 47029 chr1 161089103 161089103 1 + G T THCA 161089100 + 161089080 161089120 41 TGAGGCATTTGACTTCATTGCACGGGACCCTGCAGAGACGC TGAGGCATTTGACTTCATTGCACTGGACCCTGCAGAGACGC < 41bp 0.866258195310534 0.542575181768869 0.5043073 0.17659691 prediction 0.647366027083331 Functional Loss - NIT1 ENSG00000158793 CDS Human protein_coding chr1:161089100 chr1:161089103 nonsynonymous SNV 0.922 1 24 hm5C_associated_SNPs_51677 0 0 1 0 1 nucleolus 0.500231643929036 0.500231645738834 0.00861460000000003 0 hm5C_site_47029 DeepMRMD:0.00861460000000003;iRNA_m5C:0 47030 chr7 100391524 100391524 1 + G T COAD 100391521 + 100391501 100391541 41 TGTGCCAACCTGGCAGACCCCGGGGACTGCGAGGGCCCCTG TGTGCCAACCTGGCAGACCCCGGTGACTGCGAGGGCCCCTG < 41bp 0.823681297106109 0.498225771022304 0.90492046 0.39564672 prediction 0.647362594212219 Functional Loss - ZAN ENSG00000146839 CDS Human protein_coding chr7:100391521 chr7:100391524 synonymous SNV 0.062 0 24 hm5C_associated_SNPs_51678 0 0 0 0 1 cytosol 0.500231643921097 0.500231643921092 0.80984092 8.88178419700125e-15 hm5C_site_47030 DeepMRMD:0.80984092;iRNA_m5C:8.88178419700125e-15 47031 chr16 11001123 11001123 1 + G T UCEC 11001120 + 11001100 11001140 41 GCTCAGGGATGACAGAGCACCAAGACAGAGCCCTGACGCTC GCTCAGGGATGACAGAGCACCAATACAGAGCCCTGACGCTC < 41bp 0.823674580465327 0.455144907067502 0.210675 0.110693544 prediction 0.647349160930655 Functional Loss - CIITA ENSG00000179583 CDS Human protein_coding chr16:11001120 chr16:11001123 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_51679 0 0 0 0 0 Nucleus 0.500231690152362 0.50023378376258 0 0 hm5C_site_47031 DeepMRMD:0;iRNA_m5C:0 47032 chr14 71109036 71109036 1 + G T SARC 71109033 + 71109013 71109053 41 GAGCGCACGAGTTCAAAAGCCAAGGGGCGCAGTGCTACAAG GAGCGCACGAGTTCAAAAGCCAATGGGCGCAGTGCTACAAG < 41bp 0.862019439640124 0.538351738418205 0.7960323 0.21921775 prediction 0.647335402443836 Functional Loss - TTC9 ENSG00000133985 CDS Human protein_coding chr14:71109033 chr14:71109036 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51680 0 0 0 0 0 exosome 0.500231644299238 0.500231643921104 0.5920646 7.56267493073892e-10 hm5C_site_47032 DeepMRMD:0.5920646;iRNA_m5C:7.56267493073892e-10 Melanoma 47033 chr3 63601047 63601047 1 + G T READ 63601044 + 63601024 63601064 41 ATAATCAAGGTGGTTACAACCAAGACAGCTATGGATCAAGC ATAATCAAGGTGGTTACAACCAATACAGCTATGGATCAAGC < 41bp 0.83327184497355 0.509606379510358 0.525845 0.26399818 prediction 0.647330930926384 Functional Loss - SYNPR ENSG00000163630 CDS Human protein_coding chr3:63601044 chr3:63601047 nonsynonymous SNV 0.953 1 24 hm5C_associated_SNPs_51681 0 0 0 0 0 unknown 0.500231631103787 0.500231641047317 0.05169 0 hm5C_site_47033 DeepMRMD:0.05169;iRNA_m5C:0 47034 chr20 31829890 31829890 1 + G T UCEC 31829888 + 31829868 31829908 41 CCTCTGGTCAATGAGGTTCTCAGAGGCTTGGACATCACCCT CCTCTGGTCAATGAGGTTCTCATAGGCTTGGACATCACCCT < 41bp 0.828152041098858 0.50448966384293 0.94738996 0.91228986 prediction 0.647324754511857 Functional Loss - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31829888 chr20:31829890 nonsynonymous SNV 0.626 1 23 hm5C_associated_SNPs_51682 0 0 0 0 2 unknown 0.500231643921084 0.500231643521776 0.0702001999999999 7.98616062169799e-10 hm5C_site_47034 DeepMRMD:0.0702001999999999;iRNA_m5C:7.98616062169799e-10 47035 chr20 61458637 61458637 1 + G T SARC 61458634 + 61458614 61458654 41 CCAGAAGGGTTCCGCGGCCCCAAGGGTGACCTCGTAAGTGA CCAGAAGGGTTCCGCGGCCCCAATGGTGACCTCGTAAGTGA < 41bp 0.870047398257439 0.546390552097015 0.88845503 0.21715736 prediction 0.647313692320849 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61458634 chr20:61458637 nonsynonymous SNV 0.963 3 24 hm5C_associated_SNPs_51683 0 0 1 0 1 Cytosol 0.500230840708558 0.500231644492106 0.77691006 0 hm5C_site_47035 DeepMRMD:0.77691006;iRNA_m5C:0 47036 chr11 123810656 123810656 1 + G T LUAD 123810653 + 123810633 123810673 41 TTCCACTTCATTGGAGGCATCAAGATCTTCCTGCTGACTGT TTCCACTTCATTGGAGGCATCAATATCTTCCTGCTGACTGT < 41bp 0.866389338391473 0.542735494392765 0.32078093 0.08291718 prediction 0.647307687997415 Functional Loss - OR4D5 ENSG00000171014 CDS Human protein_coding chr11:123810653 chr11:123810656 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51684 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47036 DeepMRMD:0;iRNA_m5C:0 47037 chr16 1291668 1291668 1 + G T LUSC 1291666 + 1291646 1291686 41 TTCCCCCCGGGGATGCCGTGCTGGGTCACTGGCTGGGGCGA TTCCCCCCGGGGATGCCGTGCTTGGTCACTGGCTGGGGCGA < 41bp 0.827980429602027 0.504327210440371 0.57095855 0.116600126 prediction 0.647306438323314 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291666 chr16:1291668 nonsynonymous SNV 0.833 4 23 hm5C_associated_SNPs_51685 0 0 0 0 1 exosome 0.500231642159764 0.500231643888215 0.1419171 0 hm5C_site_47037 DeepMRMD:0.1419171;iRNA_m5C:0 47038 chr1 20005583 20005583 1 + G T ACC 20005580 + 20005560 20005600 41 CCCGGGAGCGCCAGGCCAGCCTGGCCTCGCCATCACTGCGC CCCGGGAGCGCCAGGCCAGCCTGTCCTCGCCATCACTGCGC < 41bp 0.864227836272383 0.540575386849841 0.30502826 0.21442086 prediction 0.647304898845084 Functional Loss - HTR6 ENSG00000158748 CDS Human protein_coding chr1:20005580 chr1:20005583 nonsynonymous SNV 0.096 0 24 hm5C_associated_SNPs_51686 0 0 0 0 0 Cytosol 0.500231740912534 0.50023199119552 0 0 hm5C_site_47038 DeepMRMD:0;iRNA_m5C:0 47039 chr7 119915261 119915261 1 + G T LUAD 119915258 + 119915238 119915278 41 CCTGGTGTTCTACTATGTCACGGGGTTTTTCATTGCCGTCT CCTGGTGTTCTACTATGTCACGGTGTTTTTCATTGCCGTCT < 41bp 0.823644649165619 0.48949829206403 0.9367821 0.5387144 prediction 0.647289298331239 Functional Loss - KCND2 ENSG00000184408 CDS Human protein_coding chr7:119915258 chr7:119915261 nonsynonymous SNV 0.840 2 24 hm5C_associated_SNPs_51687 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.7961354 0 hm5C_site_47039 DeepMRMD:0.7961354;iRNA_m5C:0 47040 chr16 2283161 2283161 1 + G T UCEC 2283158 + 2283138 2283178 41 TCCAGATGCAGGAGCTGTCCCTGGGCATGAAAGCCCTGGCC TCCAGATGCAGGAGCTGTCCCTGTGCATGAAAGCCCTGGCC < 41bp 0.869836622384515 0.546205727701411 0.79968846 0.17499706 prediction 0.647261789366207 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2283158 chr16:2283161 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_51688 0 0 1 0 1 chromatin 0.500231643918646 0.500231643920208 0.59937692 0 hm5C_site_47040 DeepMRMD:0.59937692;iRNA_m5C:0 47041 chrX 71416699 71416699 1 + G T LUSC 71416696 + 71416676 71416716 41 AGCCATGGAAAAGTTAAAGTCTGGGATGAGATTCAATGAAG AGCCATGGAAAAGTTAAAGTCTGTGATGAGATTCAATGAAG < 41bp 0.853741893530977 0.530127117229846 0.45561457 0.16083759 prediction 0.647229552602262 Functional Loss - PIN4 ENSG00000102309 CDS Human protein_coding chrX:71416696 chrX:71416699 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51689 0 0 1 0 2 Ribosome 0.500231643921095 0.500231634756604 0 1.83289809996268e-08 hm5C_site_47041 DeepMRMD:0;iRNA_m5C:1.83289809996268e-08 47042 chr18 905476 905476 1 + G T LUAD 905473 + 905453 905493 41 CTACAGCTCACCTGCCGCCGCCGGACTCCGGTTCCCCGGGA CTACAGCTCACCTGCCGCCGCCGTACTCCGGTTCCCCGGGA < 41bp 0.861617593347137 0.53800395068619 0.5307421 0.3275659 prediction 0.647227285321896 Functional Loss - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:905473 chr18:905476 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51690 0 0 0 0 2 exosome 0.500231440618721 0.500231643921092 0.0614842 0 hm5C_site_47042 DeepMRMD:0.0614842;iRNA_m5C:0 47043 chr11 124743643 124743643 1 + G T LUSC 124743641 + 124743621 124743661 41 TACAGAACCCAGTTCCCCTCCGGGGGCTCCCTCTCAGCCAG TACAGAACCCAGTTCCCCTCCGTGGGCTCCCTCTCAGCCAG < 41bp 0.825974393986992 0.502367585751926 0.9421201 0.31482834 prediction 0.647213616470131 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743641 chr11:124743643 nonsynonymous SNV 0.615 4 23 hm5C_associated_SNPs_51691 0 0 0 0 1 exosome 0.500231643921039 0.500231643921094 0.8842402 0 hm5C_site_47043 DeepMRMD:0.8842402;iRNA_m5C:0 47044 chr1 153233476 153233476 1 + G T TGCT 153233473 + 153233453 153233493 41 CCTCAGCCCCCAGTGGACTGCGTGAAGACCTCTGGCGGCGG CCTCAGCCCCCAGTGGACTGCGTTAAGACCTCTGGCGGCGG < 41bp 0.823604415575662 0.467141009070141 0.4158077 0.30460694 prediction 0.647208831151324 Functional Loss - LOR ENSG00000203782 CDS Human protein_coding chr1:153233473 chr1:153233476 synonymous SNV . 0 24 hm5C_associated_SNPs_51692 0 0 0 0 1 exosome 0.500231643921187 0.500231643921092 0 1.88515869581352e-13 hm5C_site_47044 DeepMRMD:0;iRNA_m5C:1.88515869581352e-13 47045 chr16 67660532 67660532 1 + G T UCEC 67660529 + 67660509 67660549 41 GTTACTGTGATGCTGTGTTTCATGAGCGCTATGCCCTCATC GTTACTGTGATGCTGTGTTTCATTAGCGCTATGCCCTCATC < 41bp 0.82359953539561 0.467915450339648 0.4151138 0.12995878 prediction 0.647199070791219 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67660529 chr16:67660532 stopgain 1.000 1 24 hm5C_associated_SNPs_51693 0 0 1 0 2 Nucleus 0.500212107690447 0.500231611741359 0 0 hm5C_site_47045 DeepMRMD:0;iRNA_m5C:0 47046 chr5 21459682 21459682 1 + G T LUAD 21459679 + 21459659 21459699 41 GCGGCCAGCCATGGAGCGCTCTGGGCCCAGCGAAGGTGGGT GCGGCCAGCCATGGAGCGCTCTGTGCCCAGCGAAGGTGGGT < 41bp 0.843941956896718 0.520367789861635 0.49590918 0.1081776 prediction 0.647148334070166 Functional Loss - GUSBP1 ENSG00000183666 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:21459679 chr5:21459682 . . 0 24 hm5C_associated_SNPs_51694 0 0 1 0 1 unknown 0.500231650266061 0.50023164392103 0 1.26900627783755e-08 hm5C_site_47046 DeepMRMD:0;iRNA_m5C:1.26900627783755e-08 47047 chr2 175191494 175191494 1 + G T rs73039541 175191491 + 175191471 175191511 41 CAGGCGCGCGGTGTCACCTCCACGAAGTCATTTACTTGCCC CAGGCGCGCGGTGTCACCTCCACTAAGTCATTTACTTGCCC < 41bp 0.823571031946841 0.4937018287713 0.57338077 0.18365887 prediction 0.647142063893682 Functional Loss - LINC01305 ENSG00000231453 ncRNA_exonic Human lincRNA chr2:175191491 chr2:175191494 . . 0 24 hm5C_associated_SNPs_51695 0 0 0 0 0 unknown 0.500253637525938 0.500231643993396 0.14676154 4.3987065084794e-05 hm5C_site_47047 DeepMRMD:0.14676154;iRNA_m5C:4.3987065084794e-05 47048 chr6 134210643 134210643 1 + G T LUAD 134210640 + 134210620 134210660 41 AAGGAATTTGTGACTTCCAACGAGAGCACCGAGGAGAGCTC AAGGAATTTGTGACTTCCAACGATAGCACCGAGGAGAGCTC < 41bp 0.823570353725226 0.468488450587863 0.46831453 0.123610795 prediction 0.647140707450452 Functional Loss - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134210640 chr6:134210643 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51696 0 0 0 0 0 exosome 0.500231643017321 0.500231643921096 0 0 hm5C_site_47048 DeepMRMD:0;iRNA_m5C:0 47049 chr3 129238491 129238491 1 + G T PAAD 129238488 + 129238468 129238508 41 AGCCGCCGGGATGTCCTCATCAAGCGATGGCCCCCACCCCT AGCCGCCGGGATGTCCTCATCAATCGATGGCCCCCACCCCT < 41bp 0.823570284861839 0.483117462249367 0.90156746 0.3473337 prediction 0.647140569723678 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129238488 chr3:129238491 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51697 0 0 1 0 2 Nucleus 0.500231643921225 0.500231644145716 0.80313492 0 hm5C_site_47049 DeepMRMD:0.80313492;iRNA_m5C:0 47050 chr2 234243679 234243679 1 + A C UCEC 234243675 + 234243655 234243695 41 TGCCCTTGCTGGCTAACAATCGAGAAAGGAGAGGCATTGCC TGCCCTTGCTGGCTAACAATCGAGCAAGGAGAGGCATTGCC < 41bp 0.890977344414213 0.56742353335423 0.9209659 0.89205 prediction 0.647107622119966 Functional Loss - SAG ENSG00000130561 CDS Human protein_coding chr2:234243675 chr2:234243679 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_51698 0 0 0 0 2 Endoplasmic reticulum 0.500231643921086 0.500231602974254 0.0578318 8.18936631841183e-08 hm5C_site_47050 DeepMRMD:0.0578318;iRNA_m5C:8.18936631841183e-08 47051 chrX 48681420 48681420 1 + G T UCEC 48681417 + 48681397 48681437 41 TAGCTGAGCGGATGACCACACGAGAAAAGAAGGTTCTGGAA TAGCTGAGCGGATGACCACACGATAAAAGAAGGTTCTGGAA < 41bp 0.82352496902166 0.490346277140456 0.7867712 0.7460826 prediction 0.647049938043319 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48681417 chrX:48681420 stopgain 0.032 0 24 hm5C_associated_SNPs_51699 0 0 1 0 1 Cytosol 0.500284132265525 0.50023164392097 0.0813771999999999 0.000104976689111025 hm5C_site_47051 DeepMRMD:0.0813771999999999;iRNA_m5C:0.000104976689111025 47052 chr11 82877101 82877101 1 + G T READ 82877098 + 82877078 82877118 41 ACACAAAAGACTTGAAAAATCAAGAATCGGAAAGTATGAGG ACACAAAAGACTTGAAAAATCAATAATCGGAAAGTATGAGG < 41bp 0.829570209195914 0.506085103298559 0.2783489 0.29440752 prediction 0.646970211794708 Functional Loss - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82877098 chr11:82877101 stopgain 1.000 1 24 hm5C_associated_SNPs_51700 0 0 1 0 0 Nucleus 0.500231643921826 0.500231644918722 0 0 hm5C_site_47052 DeepMRMD:0;iRNA_m5C:0 47053 chr17 80332984 80332984 1 + G T COAD 80332981 + 80332961 80333001 41 CGCGCGCGCTGCGCCTGGTGCTGGGCATCGTGCTGCTCTTC CGCGCGCGCTGCGCCTGGTGCTGTGCATCGTGCTGCTCTTC < 41bp 0.850448070280585 0.52697810974262 0.5371799 0.35747686 prediction 0.646939921075932 Functional Loss - UTS2R ENSG00000181408 CDS Human protein_coding chr17:80332981 chr17:80332984 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_51701 0 0 0 0 0 exosome 0.500231644070218 0.500231659307938 0.0743598000000001 0 hm5C_site_47053 DeepMRMD:0.0743598000000001;iRNA_m5C:0 47054 chr12 123950201 123950201 1 + A C rs148315353 123950197 + 123950177 123950217 41 GGTCTGGAGGGCAATGCTGGCACGATATGTCCCCAACAAAG GGTCTGGAGGGCAATGCTGGCACGCTATGTCCCCAACAAAG < 41bp 0.860020506313661 0.536557281317881 0.30786815 0.13258958 prediction 0.64692644999156 Functional Loss - SNRNP35 ENSG00000184209 CDS Human protein_coding chr12:123950197 chr12:123950201 synonymous SNV . 0 25 hm5C_associated_SNPs_51702 0 0 0 0 0 Nucleus 0.500231645467425 0.500231646541386 0 0 hm5C_site_47054 DeepMRMD:0;iRNA_m5C:0 47055 chr3 14801437 14801437 1 + G T LUSC 14801434 + 14801414 14801454 41 ACCGCCTGCTGCAGTATGACCTGGACAGCCCCCTGCAGGAG ACCGCCTGCTGCAGTATGACCTGTACAGCCCCCTGCAGGAG < 41bp 0.8711199424235 0.547658057836214 0.4191459 0.15130073 prediction 0.64692376917457 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14801434 chr3:14801437 nonsynonymous SNV 0.853 3 24 hm5C_associated_SNPs_51703 0 0 0 0 2 nucleoplasm 0.500231643921082 0.500231715193698 0 0 hm5C_site_47055 DeepMRMD:0;iRNA_m5C:0 47056 chr17 4644968 4644968 1 + G T COAD 4644966 + 4644946 4644986 41 ATCTGCTAGTGGATGGAGCCCAGGGAACCGCAAGCTGGGGC ATCTGCTAGTGGATGGAGCCCATGGAACCGCAAGCTGGGGC < 41bp 0.827276213455767 0.503815791928157 0.8941803 0.5909366 prediction 0.646920843055221 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4644966 chr17:4644968 nonsynonymous SNV 0.616 3 23 hm5C_associated_SNPs_51704 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.6064874 0 hm5C_site_47056 DeepMRMD:0.6064874;iRNA_m5C:0 47057 chr12 133485543 133485543 1 + G T rs539885655 133485540 + 133485520 133485560 41 AGGAGGAGCCCGGCTCTGGACACGGCCGTCAGGAAGCTCAG AGGAGGAGCCCGGCTCTGGACACTGCCGTCAGGAAGCTCAG < 41bp 0.834143461564552 0.510688814070713 0.41709173 0.32425433 prediction 0.646909294987678 Functional Loss - LOC101928530;ZNF605 ENSG00000072609 UTR5 Human protein_coding chr12:133485540 chr12:133485543 . . 0 24 hm5C_associated_SNPs_51705 0 0 0 0 0 unknown 0.500231643921713 0.500231643918643 0 6.13997741538697e-12 hm5C_site_47057 DeepMRMD:0;iRNA_m5C:6.13997741538697e-12 Height 47058 chr16 55525859 55525859 1 + G T LUAD 55525856 + 55525836 55525876 41 AGGATGACATCAAGGGCATTCAGGAGCTCTATGGTAAACCT AGGATGACATCAAGGGCATTCAGTAGCTCTATGGTAAACCT < 41bp 0.865506998059817 0.542055068314885 0.8965527 0.82615983 prediction 0.646903859489862 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55525856 chr16:55525859 stopgain 0.960 1 24 hm5C_associated_SNPs_51706 0 0 0 0 1 Endoplasmic reticulum 0.500070807690366 0.500231575448492 0.14078574 0 hm5C_site_47058 DeepMRMD:0.14078574;iRNA_m5C:0 47059 chr1 114215971 114215971 1 + G T LUSC 114215968 + 114215948 114215988 41 TTGGTTGTTATCCAGTAGAGCTGGAGAGAGGCCCCCGGGGC TTGGTTGTTATCCAGTAGAGCTGTAGAGAGGCCCCCGGGGC < 41bp 0.852253247202434 0.528805946169171 0.6320525 0.43143708 prediction 0.646894602066525 Functional Loss - MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114215968 chr1:114215971 stopgain 1.000 1 24 hm5C_associated_SNPs_51707 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.264105 0 hm5C_site_47059 DeepMRMD:0.264105;iRNA_m5C:0 47060 chr4 155665177 155665177 1 + G T rs77224348 155665174 + 155665154 155665194 41 GCACCGCGCGCGGCCCTGCCCCCGGCACGGCCCCCAGGTGC GCACCGCGCGCGGCCCTGCCCCCTGCACGGCCCCCAGGTGC < 41bp 0.827067904387736 0.503628923065285 0.3115537 0.08212453 prediction 0.646877962644904 Functional Loss - LRAT ENSG00000121207 UTR5 Human protein_coding chr4:155665174 chr4:155665177 . . 0 24 hm5C_associated_SNPs_51708 0 0 0 0 0 Nucleus 0.500231643948691 0.500231653733845 0 0 hm5C_site_47060 DeepMRMD:0;iRNA_m5C:0 47061 chr9 136509395 136509395 1 + G T COAD 136509392 + 136509372 136509412 41 CTTCGGGGGTCCAGGGTCCTCCAGATATCTCCGCCTGGAAG CTTCGGGGGTCCAGGGTCCTCCATATATCTCCGCCTGGAAG < 41bp 0.823438187012006 0.45400830718117 0.78494084 0.24609596 prediction 0.646876374024012 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136509392 chr9:136509395 nonsynonymous SNV 0.297 1 24 hm5C_associated_SNPs_51709 0 0 0 0 2 cytosol 0.500231643970236 0.500231643921093 0.56988168 9.82869341470405e-11 hm5C_site_47061 DeepMRMD:0.56988168;iRNA_m5C:9.82869341470405e-11 47062 chr5 10461347 10461347 1 + G T LUAD 10461345 + 10461325 10461365 41 CGAGATCCTCACGGACGATCCGGAGGGCGGGCCCGCTCGCA CGAGATCCTCACGGACGATCCGTAGGGCGGGCCCGCTCGCA < 41bp 0.834208076392058 0.510772018204807 0.8938228 0.083224446 prediction 0.646872116374501 Functional Loss - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10461345 chr5:10461347 stopgain 0.296 1 23 hm5C_associated_SNPs_51710 0 0 0 0 1 exosome 0.500231643787261 0.500231643921093 0.7876456 0 hm5C_site_47062 DeepMRMD:0.7876456;iRNA_m5C:0 47063 chr16 67236569 67236569 1 + G T TGCT 67236566 + 67236546 67236586 41 GGGAGCAGCTGGCCCGCACTCTGGCCCTGAAGCCCACTTCC GGGAGCAGCTGGCCCGCACTCTGTCCCTGAAGCCCACTTCC < 41bp 0.875981712461834 0.552551263463015 0.9035505 0.49634385 prediction 0.646860897997638 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67236566 chr16:67236569 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_51711 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.807101 0 hm5C_site_47063 DeepMRMD:0.807101;iRNA_m5C:0 47064 chr4 649750 649750 1 + G T LUAD 649747 + 649727 649767 41 AGCACACCCTCAGCCGATCACTGGGCCCTGGCCAGCGGCCT AGCACACCCTCAGCCGATCACTGTGCCCTGGCCAGCGGCCT < 41bp 0.823420491198156 0.438700546777632 0.54574454 0.15876418 prediction 0.646840982396313 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:649747 chr4:649750 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51712 0 0 0 0 2 Nucleus 0.500231643915171 0.500231621408639 0.0914890799999999 4.50130643869784e-08 hm5C_site_47064 DeepMRMD:0.0914890799999999;iRNA_m5C:4.50130643869784e-08 47065 chr2 3461464 3461464 1 + G T SARC 3461461 + 3461441 3461481 41 GCGTGACTCAGGAGGGCAGACAAGGTGGGTCGGCCGGACTT GCGTGACTCAGGAGGGCAGACAATGTGGGTCGGCCGGACTT < 41bp 0.865334720737429 0.541931426962254 0.90403646 0.7442198 prediction 0.646806587550351 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3461461 chr2:3461464 nonsynonymous SNV 0.322 2 24 hm5C_associated_SNPs_51713 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.31963332 0 hm5C_site_47065 DeepMRMD:0.31963332;iRNA_m5C:0 47066 chr2 219300044 219300044 1 + G T UCEC 219300041 + 219300021 219300061 41 GGGGACGAGCGGGAGATGGCCAAGATGGTTGCTGACACCAT GGGGACGAGCGGGAGATGGCCAATATGGTTGCTGACACCAT < 41bp 0.87264737600218 0.549264205552476 0.8176614 0.57548726 prediction 0.646766340899408 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219300041 chr2:219300044 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51714 0 0 1 0 0 Nucleus 0.50023164396112 0.500231643921441 0.48434828 7.93582977109963e-11 hm5C_site_47066 DeepMRMD:0.48434828;iRNA_m5C:7.93582977109963e-11 47067 chr2 233245364 233245364 1 + G T UCEC 233245361 + 233245341 233245381 41 GAGCCTGGAGACATGAAATACGAGATCCACCGAGACTCCAC GAGCCTGGAGACATGAAATACGATATCCACCGAGACTCCAC < 41bp 0.868398739795097 0.545016049682087 0.6334578 0.10388011 prediction 0.646765380226019 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233245361 chr2:233245364 nonsynonymous SNV 0.051 1 24 hm5C_associated_SNPs_51715 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921086 0.2669156 1.19904086659517e-14 hm5C_site_47067 DeepMRMD:0.2669156;iRNA_m5C:1.19904086659517e-14 47068 chr14 20344489 20344489 1 + G T LUAD 20344486 + 20344466 20344506 41 TTGCTGGGGCTCTCTAATTCCTGGGAACTACAGATGTTTTT TTGCTGGGGCTCTCTAATTCCTGTGAACTACAGATGTTTTT < 41bp 0.826282314163337 0.502919192834788 0.2356694 0.12847275 prediction 0.646726242657099 Functional Loss - OR4K2 ENSG00000165762 CDS Human protein_coding chr14:20344486 chr14:20344489 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_51716 0 0 0 0 0 unknown 0.500236359030143 0.500231644188831 0 9.42968262473975e-06 hm5C_site_47068 DeepMRMD:0;iRNA_m5C:9.42968262473975e-06 47069 chr15 66811350 66811350 1 + G T LUAD 66811347 + 66811327 66811367 41 ATCCTGAAGGTACTTGTTGGCTAGGAGCTGAGCTTATCACA ATCCTGAAGGTACTTGTTGGCTATGAGCTGAGCTTATCACA < 41bp 0.823359182829528 0.475675464620919 0.12825507 0.05813998 prediction 0.646718365659055 Functional Loss - ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66811347 chr15:66811350 stopgain 0.994 1 24 hm5C_associated_SNPs_51717 0 0 1 0 1 Ribosome 0.500231643698241 0.500231643920649 0 0 hm5C_site_47069 DeepMRMD:0;iRNA_m5C:0 47070 chrX 55117043 55117043 1 + G T OV 55117040 + 55117020 55117060 41 ATCAAGCAGTGCCTGCTTTTCAAGGTGAAGGGAGAGTGGAA ATCAAGCAGTGCCTGCTTTTCAATGTGAAGGGAGAGTGGAA < 41bp 0.854323119503626 0.530968744088441 0.8781238 0.05152318 prediction 0.646708750830371 Functional Loss - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55117040 chrX:55117043 nonsynonymous SNV 0.016 3 24 hm5C_associated_SNPs_51718 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643923874 0.7562476 0 hm5C_site_47070 DeepMRMD:0.7562476;iRNA_m5C:0 47071 chr7 76112318 76112318 1 + G T LUAD 76112315 + 76112295 76112335 41 TACAACAAACCCTCACTCTCCGGGGCCCGGTCTGCGCCCAG TACAACAAACCCTCACTCTCCGGTGCCCGGTCTGCGCCCAG < 41bp 0.823353419173152 0.460297257323794 0.9422732 0.8912331 prediction 0.646706838346303 Functional Loss - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76112315 chr7:76112318 synonymous SNV . 0 24 hm5C_associated_SNPs_51719 0 0 1 0 0 Nucleus 0.500231643921093 0.500231663104802 0.1020802 0 hm5C_site_47071 DeepMRMD:0.1020802;iRNA_m5C:0 47072 chr5 138268365 138268365 1 + G T COAD 138268362 + 138268342 138268382 41 ATCTGCAGCAAGGTCAAGGCCGAGGTGCAGAATCTCGGCGG ATCTGCAGCAAGGTCAAGGCCGATGTGCAGAATCTCGGCGG < 41bp 0.866537807688653 0.543185765163128 0.83378553 0.24606201 prediction 0.64670408505105 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138268362 chr5:138268365 nonsynonymous SNV 0.910 1 24 hm5C_associated_SNPs_51720 0 0 1 0 2 Nucleus 0.500230665740459 0.499811644914028 0.66757106 0.00046133148091787 hm5C_site_47072 DeepMRMD:0.66757106;iRNA_m5C:0.00046133148091787 47073 chr11 4842973 4842973 1 + G T GBM 4842970 + 4842950 4842990 41 TTGCCCAGATGTTCTTTCTACACGGATTTACTTTCATGGAG TTGCCCAGATGTTCTTTCTACACTGATTTACTTTCATGGAG < 41bp 0.844946226133687 0.521623130932358 0.21350294 0.07488376 prediction 0.646646190402659 Functional Loss - OR51F2 ENSG00000176925 CDS Human protein_coding chr11:4842970 chr11:4842973 stopgain 0.926 0 24 hm5C_associated_SNPs_51721 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47073 DeepMRMD:0;iRNA_m5C:0 47074 chr3 28520395 28520395 1 + G T COAD 28520392 + 28520372 28520412 41 GATATTCTCATGAGCAAAGACTGGAAATGTGCTGCCTATCA GATATTCTCATGAGCAAAGACTGTAAATGTGCTGCCTATCA < 41bp 0.823321496709908 0.491794359606498 0.18028477 0.09325045 prediction 0.646642993419816 Functional Loss - ZCWPW2 ENSG00000206559 CDS Human protein_coding chr3:28520392 chr3:28520395 stopgain 0.997 0 24 hm5C_associated_SNPs_51722 0 0 0 0 2 nucleus 0.500231405511763 0.50023164244683 0 0 hm5C_site_47074 DeepMRMD:0;iRNA_m5C:0 47075 chr22 31042730 31042730 1 + G T GBM 31042727 + 31042707 31042747 41 ACTGCTGGCGACTCTCGCCTCTGGGCCTGCATCCTGCTCAG ACTGCTGGCGACTCTCGCCTCTGTGCCTGCATCCTGCTCAG < 41bp 0.866810052748806 0.543513688894378 0.8936331 0.33121306 prediction 0.646592727708856 Functional Loss - SLC35E4 ENSG00000100036 CDS Human protein_coding chr22:31042727 chr22:31042730 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_51723 0 0 0 0 0 exosome 0.500231643920956 0.500231413715809 0.7872662 4.60410293001701e-07 hm5C_site_47075 DeepMRMD:0.7872662;iRNA_m5C:4.60410293001701e-07 47076 chrX 86773132 86773132 1 + G T HNSC 86773129 + 86773109 86773149 41 CAATATACTGGCACCAGTGCCAGGACCGGCCCCTGCCCATC CAATATACTGGCACCAGTGCCAGTACCGGCCCCTGCCCATC < 41bp 0.864275591854178 0.540983590557806 0.9232478 0.19265166 prediction 0.646584002592745 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86773129 chrX:86773132 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_51724 0 0 0 0 0 chromatin 0.500231557669065 0.500231560904772 0.8464956 0 hm5C_site_47076 DeepMRMD:0.8464956;iRNA_m5C:0 47077 chr1 65247170 65247170 1 + G T UCEC 65247167 + 65247147 65247187 41 GCAGCAGACGGTATGACCATCAAGGGCAGCAAAGTCCAGGT GCAGCAGACGGTATGACCATCAATGGCAGCAAAGTCCAGGT < 41bp 0.873507644329338 0.55022915881247 0.7703669 0.29168674 prediction 0.646556971033736 Functional Loss - RAVER2 ENSG00000162437 CDS Human protein_coding chr1:65247167 chr1:65247170 nonsynonymous SNV 0.117 0 24 hm5C_associated_SNPs_51725 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.5407338 0 hm5C_site_47077 DeepMRMD:0.5407338;iRNA_m5C:0 47078 chrX 64957192 64957192 1 + G T UCEC 64957189 + 64957169 64957209 41 CCCGGGACCAGAAAAAGACTCAGGAACAGCTGGTAAAGCTG CCCGGGACCAGAAAAAGACTCAGTAACAGCTGGTAAAGCTG < 41bp 0.870463356842852 0.547186725309042 0.8498598 0.2564631 prediction 0.646553263067619 Functional Loss - MSN ENSG00000147065 CDS Human protein_coding chrX:64957189 chrX:64957192 stopgain 1.000 1 24 hm5C_associated_SNPs_51726 0 0 1 0 1 Ribosome 0.500231643921095 0.500231643921092 0.6997196 5.55111512312578e-15 hm5C_site_47078 DeepMRMD:0.6997196;iRNA_m5C:5.55111512312578e-15 47079 chr8 94752736 94752736 1 + G T CESC 94752733 + 94752713 94752753 41 AAACATTCCACCCTAACTCGCCAGAGGGTGAACTGCCCCCA AAACATTCCACCCTAACTCGCCATAGGGTGAACTGCCCCCA < 41bp 0.830796910551023 0.507533271066668 0.9016185 0.63814104 prediction 0.646527278968712 Functional Loss - RBM12B-AS1 ENSG00000212998 CDS Human other chr8:94752733 chr8:94752736 stopgain . 0 24 hm5C_associated_SNPs_51727 0 0 1 0 0 unknown 0.500231643919071 0.500231648712391 0.52695492 0 hm5C_site_47079 DeepMRMD:0.52695492;iRNA_m5C:0 47080 chr7 142962282 142962282 1 + G T UCEC 142962279 + 142962259 142962299 41 GGGTCATGATCCTGCCCCCGCCCGGGGGATCTACTGTCCTC GGGTCATGATCCTGCCCCCGCCCTGGGGATCTACTGTCCTC < 41bp 0.823251899184438 0.452609279979883 0.31247985 0.16836694 prediction 0.646503798368875 Functional Loss - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142962279 chr7:142962282 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_51728 0 0 1 0 1 Endoplasmic reticulum 0.500231643938178 0.500227986598213 0 7.31467992998169e-06 hm5C_site_47080 DeepMRMD:0;iRNA_m5C:7.31467992998169e-06 47081 chrX 109694759 109694759 1 + G T BRCA 109694756 + 109694736 109694776 41 GCTCATGTCAGATCTAGACTCTGGAATAATGTCATCGCTTT GCTCATGTCAGATCTAGACTCTGTAATAATGTCATCGCTTT < 41bp 0.866024679644775 0.542784061002858 0.07699177 0.03256008 prediction 0.646481237283835 Functional Loss - RTL9 ENSG00000243978 CDS Human protein_coding chrX:109694756 chrX:109694759 nonsynonymous SNV 0.009 1 24 hm5C_associated_SNPs_51729 0 0 0 0 0 unknown 0.500231900541145 0.500231664167811 0 4.72746668256363e-07 hm5C_site_47081 DeepMRMD:0;iRNA_m5C:4.72746668256363e-07 47082 chr1 248685218 248685218 1 + A C STAD 248685214 + 248685194 248685234 41 GTTACCATGAATAAGAAAGACAAAACCATGAGCTACGGTGG GTTACCATGAATAAGAAAGACAAACCCATGAGCTACGGTGG < 41bp 0.823236949775086 0.469739823395098 0.14559042 0.05074963 prediction 0.646473899550172 Functional Loss - OR2G6 ENSG00000188558 CDS Human protein_coding chr1:248685214 chr1:248685218 nonsynonymous SNV 0.267 1 25 hm5C_associated_SNPs_51730 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_47082 DeepMRMD:0;iRNA_m5C:0 47083 chr7 100320786 100320786 1 + A C rs189775061 100320782 + 100320762 100320802 41 TGTGTCCACCTGGGCATATCCACCACCTCCCTCACCAACAT TGTGTCCACCTGGGCATATCCACCCCCTCCCTCACCAACAT < 41bp 0.875110925287431 0.551875067234343 0.15370879 0.12747416 prediction 0.646471716106177 Functional Loss - EPO ENSG00000130427 UTR3 Human protein_coding chr7:100320782 chr7:100320786 . . 0 25 hm5C_associated_SNPs_51731 0 0 0 0 0 exosome 0.500231643923849 0.500231643926113 0 0 hm5C_site_47083 DeepMRMD:0;iRNA_m5C:0 47084 chr8 145584592 145584592 1 + G T SKCM 145584589 + 145584569 145584609 41 CCATCCAGGTGGGCTCTCTGCTCGGCGCTGTTGCTATGTTC CCATCCAGGTGGGCTCTCTGCTCTGCGCTGTTGCTATGTTC < 41bp 0.856777562807207 0.533562637065705 0.5850914 0.27414602 prediction 0.646429851483004 Functional Loss - SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145584589 chr8:145584592 nonsynonymous SNV 0.074 5 24 hm5C_associated_SNPs_51732 0 0 1 0 0 Ribosome 0.500231621993498 0.500231653943124 0.1701828 0 hm5C_site_47084 DeepMRMD:0.1701828;iRNA_m5C:0 47085 chr4 124323424 124323424 1 + G T STAD 124323421 + 124323401 124323441 41 GGAACCTGCATGTGCTTAGTCAAGGGCATCTTCTACCACTG GGAACCTGCATGTGCTTAGTCAATGGCATCTTCTACCACTG < 41bp 0.873222406962311 0.550026257842148 0.8923811 0.40042204 prediction 0.646392298240326 Functional Loss - SPRY1 ENSG00000164056 CDS Human protein_coding chr4:124323421 chr4:124323424 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51733 0 0 1 0 0 nucleus 0.500231518057416 0.500231643921084 0.7847622 0 hm5C_site_47085 DeepMRMD:0.7847622;iRNA_m5C:0 47086 chr1 44438134 44438134 1 + G T STAD 44438131 + 44438111 44438151 41 GGCAAGGGCTGGAGCCCCGCCTGGGTCAGACGCCAGTGACA GGCAAGGGCTGGAGCCCCGCCTGTGTCAGACGCCAGTGACA < 41bp 0.82318779115987 0.459599911082226 0.8255453 0.13896543 prediction 0.646375582319739 Functional Loss - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44438131 chr1:44438134 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51734 0 0 1 0 1 nucleolus 0.500231661346775 0.500231644493626 0.6510906 3.37062975308555e-08 hm5C_site_47086 DeepMRMD:0.6510906;iRNA_m5C:3.37062975308555e-08 47087 chr15 27188537 27188537 1 + G T LUAD 27188534 + 27188514 27188554 41 TTTACCAAGAGAGGCTGGGCCTGGGATGGCAAAAAAGCCTT TTTACCAAGAGAGGCTGGGCCTGTGATGGCAAAAAAGCCTT < 41bp 0.823176927498861 0.462190607755835 0.33189404 0.226545 prediction 0.646353854997722 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27188534 chr15:27188537 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51735 0 0 0 0 1 unknown 0.500231643842659 0.50023163936443 0 8.95645801968215e-09 hm5C_site_47087 DeepMRMD:0;iRNA_m5C:8.95645801968215e-09 47088 chr1 111784000 111784000 1 + G T LUSC 111783997 + 111783977 111784017 41 TCACGCGGCTCCAGGATCAACAGGTTCCCTACGCAGTCAAG TCACGCGGCTCCAGGATCAACAGTTTCCCTACGCAGTCAAG < 41bp 0.823176364600873 0.450126882874292 0.75346637 0.25238717 prediction 0.646352729201746 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111783997 chr1:111784000 nonsynonymous SNV 0.388 3 24 hm5C_associated_SNPs_51736 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.50693274 0 hm5C_site_47088 DeepMRMD:0.50693274;iRNA_m5C:0 47089 chr11 65714468 65714468 1 + G T rs143114305 65714465 + 65714445 65714485 41 GGGGCCAGAGCAAGAAAGGACAGGGCTCTGAAGAGTCTGAA GGGGCCAGAGCAAGAAAGGACAGTGCTCTGAAGAGTCTGAA < 41bp 0.823167755743429 0.462885199275826 0.40411723 0.20520604 prediction 0.646335511486858 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65714465 chr11:65714468 unknown 0.189 2 24 hm5C_associated_SNPs_51737 0 0 0 1 0 exosome 0.500231643938681 0.500231643921094 0 3.51729756431496e-11 hm5C_site_47089 DeepMRMD:0;iRNA_m5C:3.51729756431496e-11 47090 chr7 6063007 6063007 1 + C A SKCM 6063010 - 6062990 6063030 41 TTCTGGCCAAACAGAGAGAACAAGAAACGTGCAATGTTCCC TTCTGGCCAAACAGAGAGAACAATAAACGTGCAATGTTCCC < 41bp 0.828465412962036 0.505322866874796 0.3283649 0.507849 prediction 0.646285092174479 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6063010 chr7:6063007 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51738 0 0 0 6 0 Ribosome 0.500231643921089 0.500231643921092 0 0 hm5C_site_47090 DeepMRMD:0;iRNA_m5C:0 47091 chr7 75614270 75614270 1 + G T UCEC 75614267 + 75614247 75614287 41 AAGATGGCCTCCTCCTCCGGCGAGGGCAAGGTGCGCCCCCT AAGATGGCCTCCTCCTCCGGCGATGGCAAGGTGCGCCCCCT < 41bp 0.82313228516502 0.468709055419696 0.8419611 0.16760087 prediction 0.64626457033004 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75614267 chr7:75614270 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51739 0 0 1 0 1 Nucleus 0.500231513542576 0.500231643921092 0.6839222 0 hm5C_site_47091 DeepMRMD:0.6839222;iRNA_m5C:0 47092 chr7 150417495 150417495 1 + G T LUAD 150417492 + 150417472 150417512 41 AGGACCAGCAGGCGGTGAGGCAGGTGAGGGACATGTTCGGG AGGACCAGCAGGCGGTGAGGCAGTTGAGGGACATGTTCGGG < 41bp 0.878562941904196 0.555444280026211 0.9147744 0.7782234 prediction 0.646237323755968 Functional Loss - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417492 chr7:150417495 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51740 0 0 0 0 0 unknown 0.500231644322576 0.500231643921092 0.273102 8.0296813642633e-10 hm5C_site_47092 DeepMRMD:0.273102;iRNA_m5C:8.0296813642633e-10 47093 chr13 114193789 114193789 1 + G T THCA 114193786 + 114193766 114193806 41 CCACCTCCATCGAACCCATCCGCGACTTCCTGGCCATCGTT CCACCTCCATCGAACCCATCCGCTACTTCCTGGCCATCGTT < 41bp 0.864888627481009 0.54177895384054 0.23069331 0.09973556 prediction 0.646219347280938 Functional Loss - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114193786 chr13:114193789 nonsynonymous SNV 0.745 4 24 hm5C_associated_SNPs_51741 0 0 1 0 1 Ribosome 0.500231643906873 0.500231668274846 0 0 hm5C_site_47093 DeepMRMD:0;iRNA_m5C:0 47094 chr12 9994440 9994440 1 + G T UCEC 9994437 + 9994417 9994457 41 AATCAGAATGGCTCAAATACCAAGGGAAGTGTTGTTATTGG AATCAGAATGGCTCAAATACCAATGGAAGTGTTGTTATTGG < 41bp 0.82310795187012 0.488696232310549 0.92793065 0.4160998 prediction 0.646215903740239 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9994437 chr12:9994440 nonsynonymous SNV 0.721 1 24 hm5C_associated_SNPs_51742 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.8558613 0 hm5C_site_47094 DeepMRMD:0.8558613;iRNA_m5C:0 47095 chr14 57075934 57075934 1 + G T UCEC 57075931 + 57075911 57075951 41 CTTAATCACGCCCGGTGGACCTGGGGAGACCAGACAACACT CTTAATCACGCCCGGTGGACCTGTGGAGACCAGACAACACT < 41bp 0.858106136730569 0.535018446035966 0.27942818 0.089048445 prediction 0.646175381389207 Functional Loss - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57075931 chr14:57075934 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51743 0 0 0 1 1 Endoplasmic reticulum 0.500231643876492 0.500231651959697 0 0 hm5C_site_47095 DeepMRMD:0;iRNA_m5C:0 47096 chr2 238730411 238730411 1 + G T UCEC 238730408 + 238730388 238730428 41 TTTCAGAAGCAGATGCTGAACAAGATAATCAGAGGGCTCAT TTTCAGAAGCAGATGCTGAACAATATAATCAGAGGGCTCAT < 41bp 0.823080485364996 0.488606320629379 0.6445014 0.08038476 prediction 0.646160970729992 Functional Loss - RBM44 ENSG00000177483 CDS Human protein_coding chr2:238730408 chr2:238730411 nonsynonymous SNV 0.019 2 24 hm5C_associated_SNPs_51744 0 0 0 0 2 exosome 0.500231643925036 0.500231644111025 0.2890028 0 hm5C_site_47096 DeepMRMD:0.2890028;iRNA_m5C:0 47097 chr9 12775787 12775787 1 + G T HNSC 12775784 + 12775764 12775804 41 GGCGCAAAGTACCCGAGAGTCTAGTGCGCTCTCTCCGTGGG GGCGCAAAGTACCCGAGAGTCTATTGCGCTCTCTCCGTGGG < 41bp 0.823078255342949 0.471853666924375 0.4323842 0.20040706 prediction 0.646156510685898 Functional Loss - LURAP1L ENSG00000153714 CDS Human protein_coding chr9:12775784 chr9:12775787 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_51745 0 0 0 0 0 nucleus 0.500231678899013 0.500231643921273 0 6.99554796312896e-08 hm5C_site_47097 DeepMRMD:0;iRNA_m5C:6.99554796312896e-08 47098 chr14 24026169 24026169 1 + G T LUAD 24026166 + 24026146 24026186 41 TGGATGGGAGCTCAAATGTCCTGGAGCAGCAGGTGTCTTAG TGGATGGGAGCTCAAATGTCCTGTAGCAGCAGGTGTCTTAG < 41bp 0.823078194843427 0.482225031615624 0.6525279 0.22422466 prediction 0.646156389686855 Functional Loss - THTPA ENSG00000259431 CDS Human protein_coding chr14:24026166 chr14:24026169 nonsynonymous SNV 0.974 3 24 hm5C_associated_SNPs_51746 0 0 1 0 2 Cytosol 0.500231642991081 0.500231740691925 0.3050558 0 hm5C_site_47098 DeepMRMD:0.3050558;iRNA_m5C:0 47099 chr13 96086095 96086095 1 + G T LUAD 96086092 + 96086072 96086112 41 GAGAAGGCGGCGCGACATGTCCAGGGCGCAGATCTGGGCTC GAGAAGGCGGCGCGACATGTCCATGGCGCAGATCTGGGCTC < 41bp 0.823058361704587 0.464290553168415 0.8279624 0.11129275 prediction 0.646116723409175 Functional Loss - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96086092 chr13:96086095 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_51747 0 0 0 0 0 Endoplasmic reticulum 0.50023141582891 0.500227446865988 0.6559248 7.93792584330433e-06 hm5C_site_47099 DeepMRMD:0.6559248;iRNA_m5C:7.93792584330433e-06 47100 chr20 44640804 44640804 1 + G T LUAD 44640801 + 44640781 44640821 41 TCGACGGTGATGGGGGGCAACTCGGCGGGGGAGCTGTGCGT TCGACGGTGATGGGGGGCAACTCTGCGGGGGAGCTGTGCGT < 41bp 0.823041928096927 0.455238054350197 0.9094231 0.8436977 prediction 0.646083856193854 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640801 chr20:44640804 synonymous SNV . 0 24 hm5C_associated_SNPs_51748 0 0 0 0 1 Endoplasmic reticulum 0.500231643922036 0.500231643921076 0.1314508 1.9195756095769e-12 hm5C_site_47100 DeepMRMD:0.1314508;iRNA_m5C:1.9195756095769e-12 47101 chr14 20979274 20979274 1 + G T LUSC 20979271 + 20979251 20979291 41 CATGAAGCGCCAGTTACCAACTGGACAATGAAGCAACTCAT CATGAAGCGCCAGTTACCAACTGTACAATGAAGCAACTCAT < 41bp 0.827063399640088 0.504058648071247 0.04144013 0.07606503 prediction 0.646009503137683 Functional Loss - RNASE10 ENSG00000182545 CDS Human protein_coding chr14:20979271 chr14:20979274 nonsynonymous SNV 0.263 0 24 hm5C_associated_SNPs_51749 0 0 0 0 0 exosome 0.500231733227491 0.500227596231441 0 8.27399209879509e-06 hm5C_site_47101 DeepMRMD:0;iRNA_m5C:8.27399209879509e-06 47102 chr6 54173485 54173485 1 + G T HNSC 54173482 + 54173462 54173502 41 TCACACCGTTTTGCAAGGTACTCGATTCAAAAGAGCCATTT TCACACCGTTTTGCAAGGTACTCTATTCAAAAGAGCCATTT < 41bp 0.822998670803404 0.486466655052742 0.41557544 0.6974107 prediction 0.645997341606808 Functional Loss - TINAG ENSG00000137251 CDS Human protein_coding chr6:54173482 chr6:54173485 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_51750 0 0 0 0 0 exosome 0.500231643921092 0.500231643920964 0 2.56461518688411e-13 hm5C_site_47102 DeepMRMD:0;iRNA_m5C:2.56461518688411e-13 47103 chr13 51544119 51544119 1 + A C rs141473699 51544115 + 51544095 51544135 41 AAGTGATGGTGGTGGCTCCACGCAAGGCTTGGCGGTTTTCC AAGTGATGGTGGTGGCTCCACGCACGGCTTGGCGGTTTTCC < 41bp 0.822992798463677 0.465185506031122 0.10611752 0.042931914 prediction 0.645985596927354 Functional Loss - RNASEH2B ENSG00000136104 UTR3 Human protein_coding chr13:51544115 chr13:51544119 . . 0 25 hm5C_associated_SNPs_51751 0 0 0 0 1 Cytosol 0.500230447829689 0.500231642421924 0 0 hm5C_site_47103 DeepMRMD:0;iRNA_m5C:0 47104 chrX 140985179 140985179 1 + G T UCEC 140985176 + 140985156 140985196 41 ATTGATGACCAGGGCATGCCCAAGAACTGTCTCCTGATTCT ATTGATGACCAGGGCATGCCCAATAACTGTCTCCTGATTCT < 41bp 0.870030026464803 0.547040609181675 0.24066305 0.04567629 prediction 0.645978834566255 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140985176 chrX:140985179 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_51752 0 0 0 0 1 exosome 0.500231643942927 0.500231644067365 0 0 hm5C_site_47104 DeepMRMD:0;iRNA_m5C:0 47105 chr8 144822037 144822037 1 + G T rs7831467 144822035 + 144822015 144822055 41 TCGTTTTCCCTTAGGGAAGCCCGGGGAGAACCGCCCGCCGC TCGTTTTCCCTTAGGGAAGCCCTGGGAGAACCGCCCGCCGC < 41bp 0.822988814861402 0.499502305635892 0.89476824 0.16734022 prediction 0.645977629722805 Functional Loss - FAM83H-AS1 ENSG00000203499 ncRNA_exonic Human protein_coding chr8:144822035 chr8:144822037 . . 0 23 hm5C_associated_SNPs_51753 0 0 0 0 2 exosome 0.500231645684123 0.500231643922032 0.78953648 3.52418250137987e-09 hm5C_site_47105 DeepMRMD:0.78953648;iRNA_m5C:3.52418250137987e-09 47106 chr19 54656706 54656706 1 + G T UCEC 54656703 + 54656683 54656723 41 TTCTACCAGCGCCTGTCGACCGAGACACTCTTCTTCATCTT TTCTACCAGCGCCTGTCGACCGATACACTCTTCTTCATCTT < 41bp 0.822984086743465 0.46179836123683 0.45585433 0.25476468 prediction 0.645968173486931 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656703 chr19:54656706 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_51754 0 0 1 0 2 Ribosome 0.50023173647456 0.500231670948009 0 1.31053101037892e-07 hm5C_site_47106 DeepMRMD:0;iRNA_m5C:1.31053101037892e-07 47107 chr2 131976266 131976266 1 + G T UCEC 131976263 + 131976243 131976283 41 GCTATGAAGACACTCAGGAACAAGATGGGGAAGTGGTGCTG GCTATGAAGACACTCAGGAACAATATGGGGAAGTGGTGCTG < 41bp 0.852955652709439 0.529981258011022 0.7311102 0.22663501 prediction 0.645948789396832 Functional Loss - POTEE ENSG00000188219 CDS Human protein_coding chr2:131976263 chr2:131976266 nonsynonymous SNV 0.015 1 24 hm5C_associated_SNPs_51755 0 0 1 0 0 chromatin 0.500230487780898 0.500231643921214 0.4622204 0 hm5C_site_47107 DeepMRMD:0.4622204;iRNA_m5C:0 47108 chr5 33937484 33937484 1 + G T LUSC 33937481 + 33937461 33937501 41 CTGGGGGACAGCTGCTGCTTCTCGGCCAAGGCGCTGTGTGT CTGGGGGACAGCTGCTGCTTCTCTGCCAAGGCGCTGTGTGT < 41bp 0.869082791667013 0.546127734731236 0.30122736 0.059012085 prediction 0.645910113871554 Functional Loss - RXFP3 ENSG00000182631 CDS Human protein_coding chr5:33937481 chr5:33937484 synonymous SNV . 0 24 hm5C_associated_SNPs_51756 0 0 0 0 0 unknown 0.500231643931013 0.500231857592762 0 0 hm5C_site_47108 DeepMRMD:0;iRNA_m5C:0 47109 chr1 114483281 114483281 1 + G T STAD 114483278 + 114483258 114483298 41 GTTGTAACAGCCGCTGATAGCTCGGGCAGTGCTGCTACATC GTTGTAACAGCCGCTGATAGCTCTGGCAGTGCTGCTACATC < 41bp 0.822954906353933 0.461679569656022 0.67436075 0.36864004 prediction 0.645909812707867 Functional Loss - HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114483278 chr1:114483281 synonymous SNV . 0 24 hm5C_associated_SNPs_51757 0 0 1 0 0 Cytosol 0.500231650373138 0.500231648734712 0.3487215 3.27685034662295e-09 hm5C_site_47109 DeepMRMD:0.3487215;iRNA_m5C:3.27685034662295e-09 47110 chr11 4566990 4566990 1 + G T UCEC 4566987 + 4566967 4567007 41 GAGCACATGGCTGTAGTTGCCTTGACATGTGGCGACAGCAG GAGCACATGGCTGTAGTTGCCTTTACATGTGGCGACAGCAG < 41bp 0.822942939734363 0.47546677132822 0.19116423 0.05449924 prediction 0.645885879468726 Functional Loss - OR52M1 ENSG00000197790 CDS Human protein_coding chr11:4566987 chr11:4566990 nonsynonymous SNV 0.018 3 24 hm5C_associated_SNPs_51758 0 0 0 0 0 unknown 0.500232680757619 0.500234311017652 0 0 hm5C_site_47110 DeepMRMD:0;iRNA_m5C:0 47111 chr18 33779917 33779917 1 + G T LUSC 33779914 + 33779894 33779934 41 GTAGTGCTTCAGCCAGCAACCCAGACTGCCAGCTGCCGCAT GTAGTGCTTCAGCCAGCAACCCATACTGCCAGCTGCCGCAT < 41bp 0.822942582393052 0.452046743216851 0.4405702 0.25321722 prediction 0.645885164786103 Functional Loss - MOCOS ENSG00000075643 CDS Human protein_coding chr18:33779914 chr18:33779917 nonsynonymous SNV 0.456 1 24 hm5C_associated_SNPs_51759 0 0 1 0 0 Ribosome 0.500229753102232 0.500231637794582 0 0 hm5C_site_47111 DeepMRMD:0;iRNA_m5C:0 47112 chr10 91065757 91065757 1 + A C KIRC 91065753 + 91065733 91065773 41 ATTCCTTGGAGAGCAGCCTACGGCAACTAAAATGCCATTTC ATTCCTTGGAGAGCAGCCTACGGCCACTAAAATGCCATTTC < 41bp 0.822927393484519 0.458198964137799 0.40353522 0.22270608 prediction 0.645854786969037 Functional Loss - IFIT2 ENSG00000119922 CDS Human protein_coding chr10:91065753 chr10:91065757 nonsynonymous SNV 0.360 1 25 hm5C_associated_SNPs_51760 0 0 0 0 1 exosome 0.500231643797774 0.500231643921558 0 0 hm5C_site_47112 DeepMRMD:0;iRNA_m5C:0 47113 chr16 30484205 30484205 1 + G T SARC 30484202 + 30484182 30484222 41 GATGGCCATGGCGCTGCTGTCTGGGTTCTTTTTCTTCGGTA GATGGCCATGGCGCTGCTGTCTGTGTTCTTTTTCTTCGGTA < 41bp 0.82291494773544 0.471555832981101 0.85625494 0.12168488 prediction 0.64582989547088 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30484202 chr16:30484205 nonsynonymous SNV 0.005 2 24 hm5C_associated_SNPs_51761 0 0 0 0 1 Cytosol 0.500231643921945 0.500231645332688 0.71250988 0 hm5C_site_47113 DeepMRMD:0.71250988;iRNA_m5C:0 47114 chr19 37064281 37064281 1 + A C rs546636847 37064277 + 37064257 37064297 41 AGTCCAACAACGAAAGAGCCCTGAAGCTCAAGCGGAGCCCG AGTCCAACAACGAAAGAGCCCTGACGCTCAAGCGGAGCCCG < 41bp 0.822907810089001 0.47366848367548 0.6258455 0.23784146 prediction 0.645815620178003 Functional Loss - ZNF529-AS1 ENSG00000233527 ncRNA_exonic Human antisense chr19:37064277 chr19:37064281 . . 0 25 hm5C_associated_SNPs_51762 0 0 0 0 0 unknown 0.500231643740391 0.500231643920735 0.251691 0 hm5C_site_47114 DeepMRMD:0.251691;iRNA_m5C:0 47115 chr10 13687075 13687075 1 + G T rs567837967 13687072 + 13687052 13687092 41 TGTCCCTGCCGGGTCCCGGCCAGGTGTGTGTGTGCCCCAGC TGTCCCTGCCGGGTCCCGGCCAGTTGTGTGTGTGCCCCAGC < 41bp 0.850934189465878 0.528031920437346 0.91802865 0.31725594 prediction 0.645804538057065 Functional Loss - FRMD4A ENSG00000151474 UTR3 Human protein_coding chr10:13687072 chr10:13687075 . . 0 24 hm5C_associated_SNPs_51763 0 0 1 0 1 Nucleus 0.500231650238993 0.500231739432373 0.8360573 0 hm5C_site_47115 DeepMRMD:0.8360573;iRNA_m5C:0 47116 chr19 55044960 55044960 1 + A C UCEC 55044956 + 55044936 55044976 41 CTCCTTCTCTTCCAGGTGCTCAGGACAAGTTCTCCCTGTCA CTCCTTCTCTTCCAGGTGCTCAGGCCAAGTTCTCCCTGTCA < 41bp 0.851758148483419 0.528865867719524 0.91976607 0.9174277 prediction 0.64578456152779 Functional Loss - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55044956 chr19:55044960 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_51764 0 0 0 2 1 Nucleus 0.500231643921294 0.500231644380503 0.00467674000000007 0 hm5C_site_47116 DeepMRMD:0.00467674000000007;iRNA_m5C:0 47117 chr1 161495433 161495433 1 + G T LUAD 161495430 + 161495410 161495450 41 AGGCCCTGCGGGATGCCAAGCTGGACAAGGCCCAGATTCAT AGGCCCTGCGGGATGCCAAGCTGTACAAGGCCCAGATTCAT < 41bp 0.864322054866089 0.541468162236801 0.18837616 0.13623658 prediction 0.645707785258577 Functional Loss - HSPA6 ENSG00000173110 CDS Human protein_coding chr1:161495430 chr1:161495433 nonsynonymous SNV 0.974 2 24 hm5C_associated_SNPs_51765 0 0 0 0 0 exosome 0.500231644429085 0.500231643923071 0 1.01202712876614e-09 hm5C_site_47117 DeepMRMD:0;iRNA_m5C:1.01202712876614e-09 47118 chr16 30964852 30964852 1 + G T LUAD 30964850 + 30964830 30964870 41 ACCCCCATGGTGCCCACATCCCGGGTGCCCGGGACTCTGGC ACCCCCATGGTGCCCACATCCCTGGTGCCCGGGACTCTGGC < 41bp 0.825939443802619 0.503085786197361 0.8260088 0.07066706 prediction 0.645707315210515 Functional Loss - ORAI3 ENSG00000175938 CDS Human protein_coding chr16:30964850 chr16:30964852 nonsynonymous SNV 0.402 1 23 hm5C_associated_SNPs_51766 0 0 1 0 0 chromatin 0.500231637866327 0.500231643921035 0.6520176 0 hm5C_site_47118 DeepMRMD:0.6520176;iRNA_m5C:0 47119 chrX 135570622 135570622 1 + A C UCEC 135570618 + 135570598 135570638 41 CTTGCAGAAGGATGGCTGTTCGGAAGAATTGGTTGTAAGGT CTTGCAGAAGGATGGCTGTTCGGACGAATTGGTTGTAAGGT < 41bp 0.822851454813529 0.459702441144823 0.91303277 0.8849845 prediction 0.645702909627058 Functional Loss - BRS3 ENSG00000102239 CDS Human protein_coding chrX:135570618 chrX:135570622 synonymous SNV . 0 25 hm5C_associated_SNPs_51767 0 0 0 0 1 unknown 0.500231629843981 0.500233117085399 0.0560965400000002 0 hm5C_site_47119 DeepMRMD:0.0560965400000002;iRNA_m5C:0 47120 chr8 124157050 124157050 1 + G T LUSC 124157047 + 124157027 124157067 41 CTAGAAAGTGGTTTTTAAAGCAAGAGATAAATGCGGCTGTA CTAGAAAGTGGTTTTTAAAGCAATAGATAAATGCGGCTGTA < 41bp 0.840994603479547 0.518147501291045 0.91638726 0.8833938 prediction 0.645694204377005 Functional Loss - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124157047 chr8:124157050 stopgain 0.148 0 24 hm5C_associated_SNPs_51768 0 0 1 0 2 Cytosol 0.500231674089023 0.500232063903025 0.0659869200000001 0 hm5C_site_47120 DeepMRMD:0.0659869200000001;iRNA_m5C:0 47121 chr9 125282099 125282099 1 + A C SKCM 125282095 + 125282075 125282115 41 GCCACATTGGGGTCACCATCCTCAAGGCTCCATCTACTAAG GCCACATTGGGGTCACCATCCTCACGGCTCCATCTACTAAG < 41bp 0.822842883641052 0.446742421376434 0.06888574 0.009954721 prediction 0.645685767282105 Functional Loss - OR1J4 ENSG00000239590 CDS Human protein_coding chr9:125282095 chr9:125282099 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_51769 0 0 0 0 0 exosome 0.500231643921091 0.500231644168801 0 0 hm5C_site_47121 DeepMRMD:0;iRNA_m5C:0 47122 chr7 34009963 34009963 1 + G T COAD 34009960 + 34009940 34009980 41 GGAGGGCGTTGTCACAGAGTCTGGGGTGCGCTGTGTTGTTC GGAGGGCGTTGTCACAGAGTCTGTGGTGCGCTGTGTTGTTC < 41bp 0.864165455964138 0.541339713462549 0.8626972 0.16350761 prediction 0.645651485003178 Functional Loss - BMPER ENSG00000164619 CDS Human protein_coding chr7:34009960 chr7:34009963 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51770 0 0 0 0 2 exosome 0.500231643795324 0.500231659372739 0.7253944 0 hm5C_site_47122 DeepMRMD:0.7253944;iRNA_m5C:0 47123 chr9 133543593 133543593 1 + G T UCEC 133543590 + 133543570 133543610 41 GCTACTTCATCGATGCCAGCCAGGAGGACCACCGGAGCTGG GCTACTTCATCGATGCCAGCCAGTAGGACCACCGGAGCTGG < 41bp 0.872626217598876 0.549812179052088 0.88215196 0.4121403 prediction 0.645628077093576 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133543590 chr9:133543593 stopgain 0.998 1 24 hm5C_associated_SNPs_51771 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.76430392 0 hm5C_site_47123 DeepMRMD:0.76430392;iRNA_m5C:0 47124 chr9 131669596 131669596 1 + G T COAD 131669593 + 131669573 131669613 41 ACGCTGCAGGTCACCCAAGACAAGATGATCTGCCTGCCTTG ACGCTGCAGGTCACCCAAGACAATATGATCTGCCTGCCTTG < 41bp 0.867315424201335 0.544504227343525 0.8872298 0.3076446 prediction 0.64562239371562 Functional Loss - LRRC8A ENSG00000136802 CDS Human protein_coding chr9:131669593 chr9:131669596 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51772 0 0 0 0 0 Endoplasmic reticulum 0.500231338186553 0.500251216167562 0.7744596 0 hm5C_site_47124 DeepMRMD:0.7744596;iRNA_m5C:0 47125 chr20 55012330 55012330 1 + G T CESC 55012327 + 55012307 55012347 41 GAGCAACACGTGCCAGAAAGCGAGGGTTGGTGGAAGTGTTT GAGCAACACGTGCCAGAAAGCGATGGTTGGTGGAAGTGTTT < 41bp 0.873822797928992 0.551018200952442 0.92415154 0.82354057 prediction 0.6456091939531 Functional Loss - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55012327 chr20:55012330 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_51773 0 0 0 0 0 chromatin 0.500231646212206 0.500402050707977 0.20122194 0 hm5C_site_47125 DeepMRMD:0.20122194;iRNA_m5C:0 47126 chrX 77380864 77380864 1 + G T HNSC 77380861 + 77380841 77380881 41 ACTTGCTGTGCCAAATGGAACACGGAGGATAAAGTCAGCCA ACTTGCTGTGCCAAATGGAACACTGAGGATAAAGTCAGCCA < 41bp 0.822792142177447 0.464603891952401 0.29553515 0.07137725 prediction 0.645584284354895 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77380861 chrX:77380864 synonymous SNV . 0 24 hm5C_associated_SNPs_51774 0 0 1 0 2 Ribosome 0.500231643921093 0.500231643921092 0 1.33226762955019e-15 hm5C_site_47126 DeepMRMD:0;iRNA_m5C:1.33226762955019e-15 47127 chrX 105855401 105855401 1 + G T UCEC 105855398 + 105855378 105855418 41 AGAGGAATCGGGCTGGGGTCCCGGGAGGGGTGATCCGAAGA AGAGGAATCGGGCTGGGGTCCCGTGAGGGGTGATCCGAAGA < 41bp 0.866774133746951 0.543983839884339 0.9142628 0.67586213 prediction 0.645580587725224 Functional Loss - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105855398 chrX:105855401 stopgain 0.797 0 24 hm5C_associated_SNPs_51775 0 0 1 0 0 nucleus 0.500231643921092 0.500231643921153 0.47680134 0 hm5C_site_47127 DeepMRMD:0.47680134;iRNA_m5C:0 47128 chr2 128324281 128324281 1 + G T LUAD 128324278 + 128324258 128324298 41 AGGTGCTGCCGCTCTACACCCTGGAGCAGGTACAGCTCTAC AGGTGCTGCCGCTCTACACCCTGTAGCAGGTACAGCTCTAC < 41bp 0.822789845895382 0.47082446191333 0.43009207 0.14305326 prediction 0.645579691790763 Functional Loss - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128324278 chr2:128324281 stopgain 1.000 1 24 hm5C_associated_SNPs_51776 0 0 0 0 1 exosome 0.500231643990234 0.500231643919451 0 1.41566092182188e-10 hm5C_site_47128 DeepMRMD:0;iRNA_m5C:1.41566092182188e-10 47129 chr2 220370084 220370084 1 + G T LUSC 220370081 + 220370061 220370101 41 CTGGAGTCAGATCAAGTCCGCAGGGTATGGAAGGCTGGGTC CTGGAGTCAGATCAAGTCCGCAGTGTATGGAAGGCTGGGTC < 41bp 0.822778142344607 0.451394752002576 0.9242448 0.8775179 prediction 0.645556284689214 Functional Loss - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220370081 chr2:220370084 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_51777 0 0 1 1 1 Ribosome 0.500231643921091 0.500231526010658 0.0934538 2.35820864613601e-07 hm5C_site_47129 DeepMRMD:0.0934538;iRNA_m5C:2.35820864613601e-07 47130 chr10 120882997 120882997 1 + G T ESCA 120882994 + 120882974 120883014 41 TCCCCAGGACTCTGCCTGCCCTGGTGTGGCACCGACAGGAC TCCCCAGGACTCTGCCTGCCCTGTTGTGGCACCGACAGGAC < 41bp 0.872546729884863 0.549807123305441 0.2524933 0.19164425 prediction 0.645479213158844 Functional Loss - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120882994 chr10:120882997 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51778 0 0 0 0 2 Cytosol 0.500231643920637 0.500231643921092 0 0 hm5C_site_47130 DeepMRMD:0;iRNA_m5C:0 47131 chr6 24703046 24703046 1 + A C rs1056319 24703042 + 24703022 24703062 41 ACTAGCCCCTTTTCTTGTACCGAGAATAAAACCATGCAGAT ACTAGCCCCTTTTCTTGTACCGAGCATAAAACCATGCAGAT < 41bp 0.826506697738913 0.503773543841209 0.27067754 0.11829597 prediction 0.645466307795409 Functional Loss - ACOT13 ENSG00000112304 UTR3 Human protein_coding chr6:24703042 chr6:24703046 . . 0 25 hm5C_associated_SNPs_51779 0 0 0 0 0 Ribosome 0.500231643921091 0.500231643947339 0 0 hm5C_site_47131 DeepMRMD:0;iRNA_m5C:0 47132 chr11 123894342 123894342 1 + G T LUSC 123894339 + 123894319 123894359 41 GGACATTGGGCTAGTGGCCTCGGGCTGCTTTCTCCTGATAG GGACATTGGGCTAGTGGCCTCGGTCTGCTTTCTCCTGATAG < 41bp 0.822724596460023 0.455600157841021 0.8469303 0.19376734 prediction 0.645449192920047 Functional Loss - OR10G9 ENSG00000236981 CDS Human protein_coding chr11:123894339 chr11:123894342 nonsynonymous SNV 0.683 0 24 hm5C_associated_SNPs_51780 0 0 0 0 0 unknown 0.50023164387669 0.500231643296547 0.6938606 1.16028608942997e-09 hm5C_site_47132 DeepMRMD:0.6938606;iRNA_m5C:1.16028608942997e-09 47133 chr9 12698640 12698640 1 + G T UCEC 12698637 + 12698617 12698657 41 CCTTGGAAGATTATGATACCCTGGGAACACTTTGTAACAGT CCTTGGAAGATTATGATACCCTGTGAACACTTTGTAACAGT < 41bp 0.822702955237627 0.471678363229931 0.15462145 0.024274945 prediction 0.645405910475255 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12698637 chr9:12698640 stopgain 1.000 1 24 hm5C_associated_SNPs_51781 0 0 0 0 1 exosome 0.500231643921092 0.500231643917782 0 6.61959376202503e-12 hm5C_site_47133 DeepMRMD:0;iRNA_m5C:6.61959376202503e-12 47134 chrX 47044477 47044477 1 + G T LUAD 47044474 + 47044454 47044494 41 ATTGCCAAGGACATGGAACGCTGGGCCCGCAGTCTCAACAA ATTGCCAAGGACATGGAACGCTGTGCCCGCAGTCTCAACAA < 41bp 0.876407024209168 0.55372114409468 0.4303107 0.20619193 prediction 0.645371760228975 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47044474 chrX:47044477 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51782 0 0 1 0 1 Ribosome 0.500231643915677 0.500231643921092 0 0 hm5C_site_47134 DeepMRMD:0;iRNA_m5C:0 47135 chr19 49649227 49649227 1 + G T BLCA 49649224 + 49649204 49649244 41 CAGGAAACGTGTGGATGACACACGAGGAGATGGAGTCCCTT CAGGAAACGTGTGGATGACACACTAGGAGATGGAGTCCCTT < 41bp 0.822678366167165 0.462382335524037 0.08678964 0.06133914 prediction 0.645356732334331 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49649224 chr19:49649227 stopgain 0.999 0 24 hm5C_associated_SNPs_51783 0 0 0 0 2 Cytosol 0.50023164390452 0.500231643920622 0 0 hm5C_site_47135 DeepMRMD:0;iRNA_m5C:0 47136 chr10 70532808 70532808 1 + G T UCEC 70532805 + 70532785 70532825 41 AAACTGAAGAAGATAACAATCAAGATGAATATGACCCTATG AAACTGAAGAAGATAACAATCAATATGAATATGACCCTATG < 41bp 0.825286864127639 0.502611670238501 0.84394425 0.089312434 prediction 0.645350387778276 Functional Loss - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70532805 chr10:70532808 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51784 0 0 1 0 2 Nucleus 0.500231773061712 0.500231643952692 0.6878885 2.58218040283253e-07 hm5C_site_47136 DeepMRMD:0.6878885;iRNA_m5C:2.58218040283253e-07 47137 chr10 43610079 43610079 1 + G T LUSC 43610077 + 43610057 43610097 41 CCTCAGCTGAGATGACCTTCCGGAGGCCCGCCCAGGCCTTC CCTCAGCTGAGATGACCTTCCGTAGGCCCGCCCAGGCCTTC < 41bp 0.822672205950568 0.486236187855722 0.9035525 0.43217933 prediction 0.645344411901135 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43610077 chr10:43610079 synonymous SNV . 0 23 hm5C_associated_SNPs_51785 0 0 0 0 0 Cytosol 0.500231643921093 0.500231643414469 0.807105 1.01324770795941e-09 hm5C_site_47137 DeepMRMD:0.807105;iRNA_m5C:1.01324770795941e-09 47138 chr17 34912947 34912947 1 + G T DLBC 34912944 + 34912924 34912964 41 GACATGGTATGCTTAAGCAACAGGATCTAAGTATTGCCATG GACATGGTATGCTTAAGCAACAGTATCTAAGTATTGCCATG < 41bp 0.857658797509523 0.534994001223528 0.17222002 0.046741575 prediction 0.645329592571991 Functional Loss - GGNBP2 ENSG00000005955 CDS Human other chr17:34912944 chr17:34912947 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_51786 0 0 1 0 1 Nucleus 0.500231643314876 0.500231660416814 0 0 hm5C_site_47138 DeepMRMD:0;iRNA_m5C:0 47139 chr2 48873912 48873912 1 + G T LUSC 48873909 + 48873889 48873929 41 CTGAAGCTTTGTTGTGTCATCAGGAAAGTTCTCACTATATC CTGAAGCTTTGTTGTGTCATCAGTAAAGTTCTCACTATATC < 41bp 0.822643027316013 0.464005354801216 0.37544692 0.08997971 prediction 0.645286054632026 Functional Loss - GTF2A1L;STON1-GTF2A1L ENSG00000068781;ENSG00000242441 CDS Human other chr2:48873909 chr2:48873912 stopgain 0.008 0 24 hm5C_associated_SNPs_51787 0 0 0 0 0 unknown 0.500231632248307 0.50023164390533 0 0 hm5C_site_47139 DeepMRMD:0;iRNA_m5C:0 47140 chr8 22458690 22458690 1 + G T UCEC 22458688 + 22458668 22458708 41 TAGGCCGACTCCTGGCCAGCCAGAAGCTGGGGGAGGTGTTG TAGGCCGACTCCTGGCCAGCCATAAGCTGGGGGAGGTGTTG < 41bp 0.822621575009809 0.49850685304486 0.8412345 0.32228366 prediction 0.645243150019618 Functional Loss - C8orf58 ENSG00000241852;ENSG00000248235 CDS Human other chr8:22458688 chr8:22458690 nonsynonymous SNV 0.132 0 23 hm5C_associated_SNPs_51788 0 0 0 0 0 exosome 0.500231643916929 0.500231643475015 0.682469 8.83827233622014e-10 hm5C_site_47140 DeepMRMD:0.682469;iRNA_m5C:8.83827233622014e-10 Body mass index 47141 chrX 23685884 23685884 1 + G T LUAD 23685881 + 23685861 23685901 41 AGTGTACCCGGGAGAGGCATCCCGGGTATCGGTCGCCGACC AGTGTACCCGGGAGAGGCATCCCTGGTATCGGTCGCCGACC < 41bp 0.822613678383296 0.462259159210651 0.9232217 0.3786369 prediction 0.645227356766593 Functional Loss - PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23685881 chrX:23685884 nonsynonymous SNV 0.849 2 24 hm5C_associated_SNPs_51789 0 0 1 0 0 Endoplasmic reticulum 0.50023164392114 0.500231643921083 0.8464434 1.13464793116691e-13 hm5C_site_47141 DeepMRMD:0.8464434;iRNA_m5C:1.13464793116691e-13 47142 chr21 45994341 45994341 1 + A C CESC 45994337 + 45994317 45994357 41 TGCTGCGTGCCCGTCTGCTGCAAGACTGTCTGCTGCAAGCC TGCTGCGTGCCCGTCTGCTGCAAGCCTGTCTGCTGCAAGCC < 41bp 0.843998275613893 0.521391387735426 0.7467965 0.50740486 prediction 0.645213775756934 Functional Loss - KRTAP10-4 ENSG00000215454 CDS Human protein_coding chr21:45994337 chr21:45994341 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_51790 0 0 0 0 0 unknown 0.500231643912091 0.500231643956653 0.47878328 0 hm5C_site_47142 DeepMRMD:0.47878328;iRNA_m5C:0 47143 chr19 39123113 39123113 1 + G T SARC 39123110 + 39123090 39123130 41 GGACCTCTTGGAAGGTATAACTGGCTTTGAAGACTCTGTCC GGACCTCTTGGAAGGTATAACTGTCTTTGAAGACTCTGTCC < 41bp 0.822605682110908 0.456999941213456 0.32599008 0.12145713 prediction 0.645211364221816 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39123110 chr19:39123113 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51791 0 0 1 0 1 Cytosol 0.500231644486163 0.500231643921046 0 1.13023235215337e-09 hm5C_site_47143 DeepMRMD:0;iRNA_m5C:1.13023235215337e-09 47144 chrX 101381895 101381895 1 + A C BLCA 101381891 + 101381871 101381911 41 GCCACCGCACGAGGGAAAGCCAGAAGTAGCTTGTATTCTGG GCCACCGCACGAGGGAAAGCCAGACGTAGCTTGTATTCTGG < 41bp 0.822601564166589 0.465105759640113 0.9121331 0.857267 prediction 0.645203128333178 Functional Loss - TCEAL2 ENSG00000184905 CDS Human protein_coding chrX:101381891 chrX:101381895 nonsynonymous SNV 0.524 0 25 hm5C_associated_SNPs_51792 0 0 0 0 0 exosome 0.500231644002302 0.500231649053183 0.1097322 0 hm5C_site_47144 DeepMRMD:0.1097322;iRNA_m5C:0 47145 chr17 60814634 60814634 1 + C A UCEC 60814637 - 60814617 60814657 41 CTAAGCTGAAGAGGCCAAATCAAGAGAGAAGAAACTTGGTC CTAAGCTGAAGAGGCCAAATCAATAGAGAAGAAACTTGGTC < 41bp 0.822594028015168 0.454929476406584 0.87491393 0.29605752 prediction 0.645188056030337 Functional Loss - MARCH10 ENSG00000173838 CDS Human protein_coding chr17:60814637 chr17:60814634 stopgain 0.101 0 24 hm5C_associated_SNPs_51793 0 0 0 0 1 nucleus 0.500231643921092 0.500231643921092 0.74982786 0 hm5C_site_47145 DeepMRMD:0.74982786;iRNA_m5C:0 47146 chr1 32622963 32622963 1 + G T BLCA 32622960 + 32622940 32622980 41 GTTCTAGGAGAGTGTGATCACAAGAGAGATGGTGGAGATGC GTTCTAGGAGAGTGTGATCACAATAGAGATGGTGGAGATGC < 41bp 0.82259303910794 0.475919391344153 0.49064052 0.19582891 prediction 0.645186078215879 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32622960 chr1:32622963 nonsynonymous SNV 0.970 1 24 hm5C_associated_SNPs_51794 0 0 1 0 2 Cytosol 0.500231644458992 0.500231619085287 0 5.07474089417315e-08 hm5C_site_47146 DeepMRMD:0;iRNA_m5C:5.07474089417315e-08 47147 chr18 29054280 29054280 1 + G T LUAD 29054277 + 29054257 29054297 41 TCCTCAGGGCAGTCTGGAACCATGAGAACAAGGCATTCCAC TCCTCAGGGCAGTCTGGAACCATTAGAACAAGGCATTCCAC < 41bp 0.822579107918047 0.468762593374208 0.46930254 0.21207193 prediction 0.645158215836094 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29054277 chr18:29054280 nonsynonymous SNV 0.922 0 24 hm5C_associated_SNPs_51795 0 0 0 0 1 Nucleus 0.500231644411541 0.500231643921092 0 9.80897141289461e-10 hm5C_site_47147 DeepMRMD:0;iRNA_m5C:9.80897141289461e-10 47148 chr10 50820303 50820303 1 + G T LUSC 50820300 + 50820280 50820320 41 CCTGCGTGAGCGTCCTGTGTCTGGCCAGGACGGCGAGCCTC CCTGCGTGAGCGTCCTGTGTCTGTCCAGGACGGCGAGCCTC < 41bp 0.822578270329443 0.475667974025245 0.40087444 0.20659712 prediction 0.645156540658886 Functional Loss - SLC18A3 ENSG00000187714 CDS Human protein_coding chr10:50820300 chr10:50820303 nonsynonymous SNV 0.013 1 24 hm5C_associated_SNPs_51796 0 0 0 0 0 exosome 0.500232157632473 0.500229594405064 0 5.1264548188712e-06 hm5C_site_47148 DeepMRMD:0;iRNA_m5C:5.1264548188712e-06 47149 chr7 6628287 6628287 1 + G T LUAD 6628284 + 6628264 6628304 41 TTCCACGGATTGTCTTCATGCTGGGCTTTGTCGTGGTTCTG TTCCACGGATTGTCTTCATGCTGTGCTTTGTCGTGGTTCTG < 41bp 0.822577392224543 0.458157346922564 0.40061787 0.11807546 prediction 0.645154784449085 Functional Loss - ZDHHC4 ENSG00000136247 CDS Human protein_coding chr7:6628284 chr7:6628287 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_51797 0 0 1 0 1 Cytosol 0.500238128840948 0.500231642242573 0 1.29731967490887e-05 hm5C_site_47149 DeepMRMD:0;iRNA_m5C:1.29731967490887e-05 47150 chrX 9863426 9863426 1 + G T rs61738461 9863423 + 9863403 9863443 41 GCAAGCAGCACAGCTCTGGGCGGGATGCTGGCCTTCTGACA GCAAGCAGCACAGCTCTGGGCGGTATGCTGGCCTTCTGACA < 41bp 0.822574771556598 0.450013786265967 0.90931755 0.7722446 prediction 0.645149543113195 Functional Loss - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9863423 chrX:9863426 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_51798 0 0 0 0 0 cytosol 0.500231643921112 0.500231643920494 0.2741459 1.23456800338317e-12 hm5C_site_47150 DeepMRMD:0.2741459;iRNA_m5C:1.23456800338317e-12 47151 chr11 55322233 55322233 1 + A C rs115731336 55322229 + 55322209 55322249 41 AAAACCATCTCTTTTGAAGGCTGCATGATGCAGCTCTTTGC AAAACCATCTCTTTTGAAGGCTGCCTGATGCAGCTCTTTGC < 41bp 0.822570049447812 0.454566428913783 0.13702992 0.16957071 prediction 0.645140098895623 Functional Loss - OR4C15 ENSG00000181939 CDS Human protein_coding chr11:55322229 chr11:55322233 nonsynonymous SNV 0.269 0 25 hm5C_associated_SNPs_51799 0 0 0 0 0 unknown 0.500231643921152 0.500231643921092 0 1.19904086659517e-13 hm5C_site_47151 DeepMRMD:0;iRNA_m5C:1.19904086659517e-13 47152 chr5 163256 163256 1 + G T LUAD 163253 + 163233 163273 41 GCGCTTCTGTGTGGACAGGACGGGGAGACCCTGCGCCCAGG GCGCTTCTGTGTGGACAGGACGGTGAGACCCTGCGCCCAGG < 41bp 0.822556485363895 0.45094970126285 0.90841866 0.36496478 prediction 0.64511297072779 Functional Loss - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:163253 chr5:163256 synonymous SNV . 0 24 hm5C_associated_SNPs_51800 0 0 0 0 0 exosome 0.500237340525991 0.500231657916853 0.81683732 1.13652182769375e-05 hm5C_site_47152 DeepMRMD:0.81683732;iRNA_m5C:1.13652182769375e-05 47153 chr4 7055867 7055867 1 + G T UCEC 7055864 + 7055844 7055884 41 ATTACGTGAGCATGTACATCCACGGGAACCTGGGGAAGGCC ATTACGTGAGCATGTACATCCACTGGAACCTGGGGAAGGCC < 41bp 0.822549572777134 0.465700047401419 0.3549281 0.10151273 prediction 0.645099145554267 Functional Loss - TADA2B ENSG00000173011 CDS Human protein_coding chr4:7055864 chr4:7055867 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_51801 0 0 0 0 1 chromatin 0.500231643920333 0.500231643921092 0 0 hm5C_site_47153 DeepMRMD:0;iRNA_m5C:0 47154 chr3 195385028 195385028 1 + G T rs562577266 195385025 + 195385005 195385045 41 CTCGGCGCTTGGCGCTGGCGCTGGCCAAGGCGGTGAGTCCC CTCGGCGCTTGGCGCTGGCGCTGTCCAAGGCGGTGAGTCCC < 41bp 0.840121614293857 0.517572319390265 0.74106586 0.53798825 prediction 0.645098589807185 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195385025 chr3:195385028 . . 0 24 hm5C_associated_SNPs_51802 0 0 1 0 1 unknown 0.500231643921093 0.500231643921092 0.40615522 4.44089209850063e-16 hm5C_site_47154 DeepMRMD:0.40615522;iRNA_m5C:4.44089209850063e-16 47155 chr9 114423979 114423979 1 + G T SARC 114423976 + 114423956 114423996 41 AGAGCAGCTCAAGTTGGAGGCTGGCGTGGAGAGGATCAAGG AGAGCAGCTCAAGTTGGAGGCTGTCGTGGAGAGGATCAAGG < 41bp 0.832279557436819 0.509746232405355 0.83312577 0.5800339 prediction 0.645066650062928 Functional Loss - GNG10 ENSG00000242616 CDS Human protein_coding chr9:114423976 chr9:114423979 nonsynonymous SNV 0.974 1 24 hm5C_associated_SNPs_51803 0 0 1 0 1 Cytosol 0.50023164243691 0.500231349340589 0.50618374 5.86192643536876e-07 hm5C_site_47155 DeepMRMD:0.50618374;iRNA_m5C:5.86192643536876e-07 47156 chr11 36595604 36595604 1 + G T LUSC 36595601 + 36595581 36595621 41 GCAAGACAAGCCCGTCAGCACAAGAGAAGAGCTCAGGCAAG GCAAGACAAGCCCGTCAGCACAATAGAAGAGCTCAGGCAAG < 41bp 0.822506276812954 0.457291296015148 0.7709894 0.16031358 prediction 0.645012553625909 Functional Loss - RAG1 ENSG00000166349 CDS Human protein_coding chr11:36595601 chr11:36595604 nonsynonymous SNV 0.116 1 24 hm5C_associated_SNPs_51804 0 0 0 0 0 exosome 0.500231645095848 0.500231643921105 0.5419788 2.34948616117947e-09 hm5C_site_47156 DeepMRMD:0.5419788;iRNA_m5C:2.34948616117947e-09 47157 chr5 140616047 140616047 1 + G T LUAD 140616044 + 140616024 140616064 41 GCGACGCGGCCAAGCACAGGCTGGTGGTGCTGGTCAAGGAC GCGACGCGGCCAAGCACAGGCTGTTGGTGCTGGTCAAGGAC < 41bp 0.82923045815594 0.506739045288257 0.2015883 0.12427381 prediction 0.644982825735365 Functional Loss - PCDHB18P ENSG00000146001 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:140616044 chr5:140616047 . . 0 24 hm5C_associated_SNPs_51805 0 0 0 0 0 unknown 0.500231643913168 0.500231643921092 0 0 hm5C_site_47157 DeepMRMD:0;iRNA_m5C:0 47158 chr9 78638728 78638728 1 + A C LGG 78638724 + 78638704 78638744 41 AGCCTGGAAGAGAGGCTACACGGGAAAGAACATTGTGGTCA AGCCTGGAAGAGAGGCTACACGGGCAAGAACATTGTGGTCA < 41bp 0.822477456682541 0.464670598232941 0.87135553 0.7077248 prediction 0.644954913365082 Functional Loss - PCSK5 ENSG00000099139 CDS Human protein_coding chr9:78638724 chr9:78638728 synonymous SNV . 0 25 hm5C_associated_SNPs_51806 0 0 0 0 2 exosome 0.500231645778111 0.500231116827769 0.32726146 1.05790068527511e-06 hm5C_site_47158 DeepMRMD:0.32726146;iRNA_m5C:1.05790068527511e-06 47159 chr7 35913313 35913313 1 + G T LUAD 35913310 + 35913290 35913330 41 GGACTACCTAAATGCAGAATCACGAGTGAACAGACGTCAGA GGACTACCTAAATGCAGAATCACTAGTGAACAGACGTCAGA < 41bp 0.82247349781637 0.477398272652571 0.22623426 0.019704312 prediction 0.64494699563274 Functional Loss - SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35913310 chr7:35913313 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_51807 0 0 1 0 2 chromatin 0.500231644444488 0.500231645472245 0 0 hm5C_site_47159 DeepMRMD:0;iRNA_m5C:0 47160 chr1 155179011 155179011 1 + A C COAD 155179007 + 155178987 155179027 41 GGCAGGGGAGGGCAGAAGCACACAAGGAAGTGTTTCCGGGA GGCAGGGGAGGGCAGAAGCACACACGGAAGTGTTTCCGGGA < 41bp 0.875015964311929 0.552545453304407 0.2436567 0.17875376 prediction 0.644941022015044 Functional Loss - MTX1 ENSG00000173171 CDS Human protein_coding chr1:155179007 chr1:155179011 nonsynonymous SNV 0.056 0 25 hm5C_associated_SNPs_51808 0 0 0 0 0 Ribosome 0.500231643921092 0.5002316439211 0 0 hm5C_site_47160 DeepMRMD:0;iRNA_m5C:0 47161 chr4 81974563 81974563 1 + G T LUAD 81974560 + 81974540 81974580 41 GAGAGCTGTGGGGGTCGTTCCTGGGATTCCTGAGCCTTGCT GAGAGCTGTGGGGGTCGTTCCTGTGATTCCTGAGCCTTGCT < 41bp 0.822467271891647 0.477198840041313 0.8861636 0.2890204 prediction 0.644934543783293 Functional Loss - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81974560 chr4:81974563 nonsynonymous SNV 0.856 4 24 hm5C_associated_SNPs_51809 0 0 0 0 1 Nucleus 0.500231627402044 0.500270672686717 0.7723272 0 hm5C_site_47161 DeepMRMD:0.7723272;iRNA_m5C:0 47162 chr7 106508759 106508759 1 + G T UCEC 106508756 + 106508736 106508776 41 ATCCTGCAGAGCTTCTTCACCAAGATGGCCAAGAAGAAATC ATCCTGCAGAGCTTCTTCACCAATATGGCCAAGAAGAAATC < 41bp 0.822462865258738 0.4555269479388 0.4788398 0.068487465 prediction 0.644925730517476 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508756 chr7:106508759 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51810 0 0 0 0 0 Cytosol 0.500231635238413 0.500231645142995 0 0 hm5C_site_47162 DeepMRMD:0;iRNA_m5C:0 47163 chr20 49575390 49575390 1 + G T LUSC 49575387 + 49575367 49575407 41 GGAAGAGGTCGCCATGGCTTCCCGGGAGGAGGTACTCGCCT GGAAGAGGTCGCCATGGCTTCCCTGGAGGAGGTACTCGCCT < 41bp 0.822444624325646 0.484684555243317 0.27771035 0.08018562 prediction 0.644889248651292 Functional Loss - MOCS3 ENSG00000124217 CDS Human protein_coding chr20:49575387 chr20:49575390 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51811 0 0 1 0 0 Nucleus 0.500236391911151 0.50023164392116 0 9.49597998212148e-06 hm5C_site_47163 DeepMRMD:0;iRNA_m5C:9.49597998212148e-06 47164 chr21 34805103 34805103 1 + C A BLCA 34805106 - 34805086 34805126 41 AGGCCTCTATATTTCAGGACCAGGAAGAAACAGGCTCCTGC AGGCCTCTATATTTCAGGACCAGTAAGAAACAGGCTCCTGC < 41bp 0.85782512757213 0.535389532287213 0.23814955 0.19175836 prediction 0.644871190569835 Functional Loss - IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34805106 chr21:34805103 nonsynonymous SNV 0.991 0 24 hm5C_associated_SNPs_51812 0 0 1 0 1 Endoplasmic reticulum 0.500276496111452 0.500231644036996 0 8.9704148911629e-05 hm5C_site_47164 DeepMRMD:0;iRNA_m5C:8.9704148911629e-05 47165 chr14 56233069 56233069 1 + G T rs10144431 56233066 + 56233046 56233086 41 AGTTGAAGAATCTGGCTTTCCTCGGCAAGCGGATGAACACC AGTTGAAGAATCTGGCTTTCCTCTGCAAGCGGATGAACACC < 41bp 0.82243038421748 0.49911865916124 0.52960724 0.34405828 prediction 0.644860768434961 Functional Loss - RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233066 chr14:56233069 . . 0 24 hm5C_associated_SNPs_51813 0 0 0 0 0 unknown 0.500231643954591 0.500231643920654 0.0592144800000001 6.78743727888786e-11 hm5C_site_47165 DeepMRMD:0.0592144800000001;iRNA_m5C:6.78743727888786e-11 47166 chr1 175092665 175092665 1 + G T LUSC 175092663 + 175092643 175092683 41 ACCTCTGCTGACGGAGAGACCAGGGAGGTTCCGGTGGGGAA ACCTCTGCTGACGGAGAGACCATGGAGGTTCCGGTGGGGAA < 41bp 0.826561754620548 0.504135947283104 0.9051597 0.3428773 prediction 0.64485161467489 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175092663 chr1:175092665 nonsynonymous SNV 0.041 0 23 hm5C_associated_SNPs_51814 0 0 0 0 0 exosome 0.500233108503034 0.50023158623244 0.8103194 3.04454118760233e-06 hm5C_site_47166 DeepMRMD:0.8103194;iRNA_m5C:3.04454118760233e-06 47167 chr1 25611101 25611101 1 + G T rs199509194 25611098 + 25611078 25611118 41 ACCGTGATGGCGGCCATTGGCTTGGGCTTCCTCACCTCGAG ACCGTGATGGCGGCCATTGGCTTTGGCTTCCTCACCTCGAG < 41bp 0.870975578905563 0.548561088634212 0.4601049 0.2123422 prediction 0.644828980542701 Functional Loss - RHD ENSG00000187010 CDS Human protein_coding chr1:25611098 chr1:25611101 nonsynonymous SNV 0.018 0 24 hm5C_associated_SNPs_51815 0 0 1 0 1 Nucleus 0.500231643914223 0.500231645484939 0 0 hm5C_site_47167 DeepMRMD:0;iRNA_m5C:0 47168 chr12 6646827 6646827 1 + G T UCEC 6646824 + 6646804 6646844 41 AAACTGTGGCGTGATGGCCGCGGGGCTCTCCAGAACATCAT AAACTGTGGCGTGATGGCCGCGGTGCTCTCCAGAACATCAT < 41bp 0.873970282634355 0.551565229389308 0.8965599 0.22647324 prediction 0.644810106490095 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646824 chr12:6646827 synonymous SNV . 0 24 hm5C_associated_SNPs_51816 0 0 1 0 1 Ribosome 0.500231643921088 0.500231640705027 0.7931198 6.43212150208683e-09 hm5C_site_47168 DeepMRMD:0.7931198;iRNA_m5C:6.43212150208683e-09 47169 chr9 136302943 136302943 1 + G T LUSC 136302940 + 136302920 136302960 41 TGAAGCGTGGAGACAGCTTCCTCGATGGGACCCGGTGTATG TGAAGCGTGGAGACAGCTTCCTCTATGGGACCCGGTGTATG < 41bp 0.822403863789254 0.491161566147586 0.24951124 0.9285033 prediction 0.644807727578508 Functional Loss - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136302940 chr9:136302943 nonsynonymous SNV 0.982 3 24 hm5C_associated_SNPs_51817 0 0 1 0 1 nucleus 0.500231643921127 0.500231643921092 0 6.88338275267597e-14 hm5C_site_47169 DeepMRMD:0;iRNA_m5C:6.88338275267597e-14 47170 chr9 127119096 127119096 1 + C A UCEC 127119099 - 127119079 127119119 41 ATTGACCTCTGCGTCATCAGCAAGAACAAGCTGGATTTTCT ATTGACCTCTGCGTCATCAGCAATAACAAGCTGGATTTTCT < 41bp 0.86240358912429 0.540003117067601 0.29972395 0.11941865 prediction 0.644800944113379 Functional Loss - PSMB7 ENSG00000136930 CDS Human protein_coding chr9:127119099 chr9:127119096 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_51818 0 0 1 0 2 Ribosome 0.499838322658841 0.500231624027509 0 0 hm5C_site_47170 DeepMRMD:0;iRNA_m5C:0 47171 chr3 97510649 97510649 1 + G T LUSC 97510646 + 97510626 97510666 41 CCATAAAAGGAGAAGGCTTGCAAGAAGGTGTAGACTGGCTT CCATAAAAGGAGAAGGCTTGCAATAAGGTGTAGACTGGCTT < 41bp 0.82238041079167 0.489688978255404 0.21836159 0.11183542 prediction 0.644760821583341 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97510646 chr3:97510649 stopgain 0.999 1 24 hm5C_associated_SNPs_51819 0 0 1 0 2 exosome 0.500231643921092 0.500231643921093 0 0 hm5C_site_47171 DeepMRMD:0;iRNA_m5C:0 47172 chr1 203276539 203276539 1 + G T UCEC 203276536 + 203276516 203276556 41 CTGGGCCGGAGCAGCCCCTCCAAGAACTACGTGATGGCAGT CTGGGCCGGAGCAGCCCCTCCAATAACTACGTGATGGCAGT < 41bp 0.863687540887476 0.54131604859599 0.16487417 0.01688376 prediction 0.644742984582973 Functional Loss - BTG2 ENSG00000159388 CDS Human protein_coding chr1:203276536 chr1:203276539 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51820 0 0 0 1 0 exosome 0.500231384562107 0.50023161390095 0 0 hm5C_site_47172 DeepMRMD:0;iRNA_m5C:0 47173 chr11 4928900 4928900 1 + G T COAD 4928897 + 4928877 4928917 41 CACCTAATGCCTGCTTTGCTCAAGAATTCTTCATTCATGGA CACCTAATGCCTGCTTTGCTCAATAATTCTTCATTCATGGA < 41bp 0.822370823652821 0.475692181165272 0.19141859 0.029768705 prediction 0.644741647305641 Functional Loss - OR51A7 ENSG00000176895 CDS Human protein_coding chr11:4928897 chr11:4928900 stopgain 0.980 1 24 hm5C_associated_SNPs_51821 0 0 0 0 0 exosome 0.500231626550672 0.500212364561548 0 3.85239782487723e-05 hm5C_site_47173 DeepMRMD:0;iRNA_m5C:3.85239782487723e-05 47174 chr18 9513092 9513092 1 + A C LUSC 9513088 + 9513068 9513108 41 ACCAGCAGCCCCAGTGAACACCGCAGGGTGGAGCATGGCAG ACCAGCAGCCCCAGTGAACACCGCCGGGTGGAGCATGGCAG < 41bp 0.889092243956894 0.566735188365911 0.7778964 0.6182381 prediction 0.644714111181967 Functional Loss - RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9513088 chr18:9513092 synonymous SNV . 0 25 hm5C_associated_SNPs_51822 0 0 1 0 0 Ribosome 0.500231643921303 0.500231643921093 0.3193166 4.21440660147709e-13 hm5C_site_47174 DeepMRMD:0.3193166;iRNA_m5C:4.21440660147709e-13 47175 chr3 12858058 12858058 1 + G T LUAD 12858055 + 12858035 12858075 41 ACAAGATTGCAGCCGAGGCCCTGGTGGTGCTGCAGGAGCTG ACAAGATTGCAGCCGAGGCCCTGTTGGTGCTGCAGGAGCTG < 41bp 0.82234262121692 0.447532988982091 0.24958944 0.105757505 prediction 0.644685242433839 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12858055 chr3:12858058 nonsynonymous SNV 0.897 0 24 hm5C_associated_SNPs_51823 0 0 1 0 0 chromatin 0.500231643921152 0.500231644759948 0 0 hm5C_site_47175 DeepMRMD:0;iRNA_m5C:0 47176 chr5 147480092 147480092 1 + G T COAD 147480089 + 147480069 147480109 41 CCAGAGAGAACGATCCTATCCAGGGCCCAGATGGGAAAGTG CCAGAGAGAACGATCCTATCCAGTGCCCAGATGGGAAAGTG < 41bp 0.871626388170147 0.549306902329458 0.87715787 0.27142736 prediction 0.644638971681377 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147480089 chr5:147480092 nonsynonymous SNV 0.810 3 24 hm5C_associated_SNPs_51824 0 0 0 0 2 Endoplasmic reticulum 0.500231643921325 0.500231643921092 0.75431574 4.65183447317941e-13 hm5C_site_47176 DeepMRMD:0.75431574;iRNA_m5C:4.65183447317941e-13 47177 chr4 40351330 40351330 1 + G T LIHC 40351327 + 40351307 40351347 41 TTTTTATCTCCCAGCAGCCTCCGGAGAAAAGGTCTCCCTGG TTTTTATCTCCCAGCAGCCTCCGTAGAAAAGGTCTCCCTGG < 41bp 0.855903449361124 0.533589924337819 0.790449 0.16794959 prediction 0.644627050046612 Functional Loss - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40351327 chr4:40351330 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_51825 0 0 0 0 0 nucleus 0.500231643801556 0.500231643921092 0.580898 0 hm5C_site_47177 DeepMRMD:0.580898;iRNA_m5C:0 47178 chrX 48434753 48434753 1 + G T CHOL 48434750 + 48434730 48434770 41 ATCATGCAGGCAAGTCTGCTCGGGGAACCAGAGGAGGTGGC ATCATGCAGGCAAGTCTGCTCGGTGAACCAGAGGAGGTGGC < 41bp 0.873942380592668 0.551631578103242 0.91138816 0.5283115 prediction 0.644621604978853 Functional Loss - RBM3 ENSG00000102317 CDS Human protein_coding chrX:48434750 chrX:48434753 stopgain 0.999 0 24 hm5C_associated_SNPs_51826 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.76615332 2.22044604925031e-16 hm5C_site_47178 DeepMRMD:0.76615332;iRNA_m5C:2.22044604925031e-16 47179 chrX 135586595 135586595 1 + G T UCEC 135586592 + 135586572 135586612 41 CATGAGCGAGTTGTCATCATCAAGAATATGTTTCATCCTAT CATGAGCGAGTTGTCATCATCAATAATATGTTTCATCCTAT < 41bp 0.869615897241819 0.547311125601406 0.41774523 0.122704774 prediction 0.644609543280825 Functional Loss - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135586592 chrX:135586595 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51827 0 0 1 0 2 Ribosome 0.500231644012926 0.500231637255898 0 1.35140556523083e-08 hm5C_site_47179 DeepMRMD:0;iRNA_m5C:1.35140556523083e-08 47180 chr1 67147821 67147821 1 + G T STAD 67147819 + 67147799 67147839 41 CCCAGGTCCCACAGGCCCCCCAGGGCCTCCTGGGCCTCCTC CCCAGGTCCCACAGGCCCCCCATGGCCTCCTGGGCCTCCTC < 41bp 0.822276267215928 0.488184007451946 0.9277844 0.32746983 prediction 0.644552534431855 Functional Loss - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67147819 chr1:67147821 nonsynonymous SNV 0.624 3 23 hm5C_associated_SNPs_51828 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643923565 0.8555688 0 hm5C_site_47180 DeepMRMD:0.8555688;iRNA_m5C:0 47181 chr1 53072440 53072440 1 + G T UCEC 53072437 + 53072417 53072457 41 TGCAGCAGCTGCAGCGAGACCTGGGCCCCCACCACTTTAAC TGCAGCAGCTGCAGCGAGACCTGTGCCCCCACCACTTTAAC < 41bp 0.873808750090714 0.551539263204737 0.4129286 0.19607523 prediction 0.644538973771954 Functional Loss - GPX7 ENSG00000116157 CDS Human protein_coding chr1:53072437 chr1:53072440 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_51829 0 0 0 0 1 exosome 0.500231643921093 0.500231622668006 0 4.25061741360366e-08 hm5C_site_47181 DeepMRMD:0;iRNA_m5C:4.25061741360366e-08 47182 chr11 44148449 44148449 1 + G T LUSC 44148446 + 44148426 44148466 41 GTGTTACAAGCTGGCTGTGTCCCGGTTGTCATTGCAGACTC GTGTTACAAGCTGGCTGTGTCCCTGTTGTCATTGCAGACTC < 41bp 0.822266635244737 0.46047383071829 0.1224111 0.050929844 prediction 0.644533270489474 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148446 chr11:44148449 synonymous SNV . 0 24 hm5C_associated_SNPs_51830 0 0 1 0 2 Endoplasmic reticulum 0.500231643921093 0.500231650375617 0 0 hm5C_site_47182 DeepMRMD:0;iRNA_m5C:0 47183 chr17 48252649 48252649 1 + G T STAD 48252646 + 48252626 48252666 41 TGGTCCACCACTGCACCATCCACGGGAACACAGAGGAGCTG TGGTCCACCACTGCACCATCCACTGGAACACAGAGGAGCTG < 41bp 0.822264835375971 0.455695270224803 0.16877836 0.035786897 prediction 0.644529670751941 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48252646 chr17:48252649 nonsynonymous SNV 0.972 4 24 hm5C_associated_SNPs_51831 0 0 0 0 1 Cytosol 0.500231663985466 0.500225025684556 0 1.3276601821266e-05 hm5C_site_47183 DeepMRMD:0;iRNA_m5C:1.3276601821266e-05 47184 chr17 78169367 78169367 1 + G T LUAD 78169364 + 78169344 78169384 41 TTATGCTTTGCAGCAGCTGCCTGGAGATCCCGGAGGGAGAC TTATGCTTTGCAGCAGCTGCCTGTAGATCCCGGAGGGAGAC < 41bp 0.822260860953281 0.476398550930792 0.80135417 0.4245966 prediction 0.644521721906561 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78169364 chr17:78169367 stopgain 0.006 0 24 hm5C_associated_SNPs_51832 0 0 0 0 2 nucleus 0.500231643927139 0.50023164392109 0.60270834 1.20987664331551e-11 hm5C_site_47184 DeepMRMD:0.60270834;iRNA_m5C:1.20987664331551e-11 47185 chr12 52282939 52282939 1 + A C STAD 52282935 + 52282915 52282955 41 CTTTCCTTGATGTGAACCAGCAGGACAAAGGAGGGGACACG CTTTCCTTGATGTGAACCAGCAGGCCAAAGGAGGGGACACG < 41bp 0.873326857988344 0.551075326963034 0.62909913 0.8822013 prediction 0.644503062050621 Functional Loss - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52282935 chr12:52282939 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_51833 0 0 0 1 3 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_47185 DeepMRMD:0;iRNA_m5C:0 47186 chr7 129856292 129856292 1 + G T UCEC 129856289 + 129856269 129856309 41 AGTTCCATATCTGACATTAACAAGAAATTTAGTAAATTTTG AGTTCCATATCTGACATTAACAATAAATTTAGTAAATTTTG < 41bp 0.836685150602618 0.514449360687765 0.31939033 0.09319347 prediction 0.644471579829705 Functional Loss - SSMEM1 ENSG00000165120 CDS Human protein_coding chr7:129856289 chr7:129856292 nonsynonymous SNV 0.245 1 24 hm5C_associated_SNPs_51834 0 0 0 0 0 exosome 0.500231643466428 0.500231570730469 0 1.45471918955309e-07 hm5C_site_47186 DeepMRMD:0;iRNA_m5C:1.45471918955309e-07 47187 chr16 28905868 28905868 1 + G T SARC 28905865 + 28905845 28905885 41 GTCCGGCCAGGGCAGTATGACGGGCTGGTGGAGCTGGCCAC GTCCGGCCAGGGCAGTATGACGGTCTGGTGGAGCTGGCCAC < 41bp 0.822230762200081 0.439187007595323 0.86076784 0.30997348 prediction 0.644461524400162 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28905865 chr16:28905868 synonymous SNV . 0 24 hm5C_associated_SNPs_51835 0 0 0 0 2 chromatin 0.50023164378525 0.500231643921097 0.72153568 0 hm5C_site_47187 DeepMRMD:0.72153568;iRNA_m5C:0 47188 chr12 83251134 83251134 1 + G T LUSC 83251131 + 83251111 83251151 41 ATCGTGGGACGAGCCGATGTCGGGGCCAGTCTCTTCTTTCT ATCGTGGGACGAGCCGATGTCGGTGCCAGTCTCTTCTTTCT < 41bp 0.854980400742351 0.532794412531051 0.9501033 0.7613249 prediction 0.644371976422599 Functional Loss - TMTC2 ENSG00000179104 CDS Human protein_coding chr12:83251131 chr12:83251134 synonymous SNV . 0 24 hm5C_associated_SNPs_51836 0 0 0 0 0 Nucleus 0.500231643902793 0.500231643919592 0.3775568 0 hm5C_site_47188 DeepMRMD:0.3775568;iRNA_m5C:0 47189 chr1 28858817 28858817 1 + A C rs74891018 28858813 + 28858793 28858833 41 GTCAGCAGGAGACAGTCACACAGCAGCCCTCACCGATGATG GTCAGCAGGAGACAGTCACACAGCCGCCCTCACCGATGATG < 41bp 0.891073998917884 0.568901314970295 0.41554272 0.58987105 prediction 0.644345367895179 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28858813 chr1:28858817 synonymous SNV . 0 25 hm5C_associated_SNPs_51837 0 0 1 0 1 Ribosome 0.500254982284845 0.500225691668972 0 5.85812317464018e-05 hm5C_site_47189 DeepMRMD:0;iRNA_m5C:5.85812317464018e-05 47190 chr21 45862237 45862237 1 + G T rs45520246 45862234 + 45862214 45862254 41 CTGTCTGAACTCCTGACTGTCAGGATAAACTCCGTGGGGGT CTGTCTGAACTCCTGACTGTCAGTATAAACTCCGTGGGGGT < 41bp 0.822169677180184 0.497773373502973 0.9121094 0.11285159 prediction 0.644339354360369 Functional Loss - TRPM2 ENSG00000142185 UTR3 Human protein_coding chr21:45862234 chr21:45862237 . . 0 24 hm5C_associated_SNPs_51838 0 0 0 0 0 Ribosome 0.500231643995323 0.500231643921092 0.8242188 1.4846102125432e-10 hm5C_site_47190 DeepMRMD:0.8242188;iRNA_m5C:1.4846102125432e-10 47191 chr1 116670202 116670202 1 + G T TGCT 116670199 + 116670179 116670219 41 GAGATCCCCACCACCTGGTCCAAGAAAGCCCGGTGGCCTCG GAGATCCCCACCACCTGGTCCAATAAAGCCCGGTGGCCTCG < 41bp 0.82215879977714 0.450213369305045 0.7504947 0.5089528 prediction 0.644317599554279 Functional Loss - MAB21L3 ENSG00000173212 CDS Human protein_coding chr1:116670199 chr1:116670202 nonsynonymous SNV 0.694 1 24 hm5C_associated_SNPs_51839 0 0 0 0 1 nucleus 0.500231643921097 0.500231643860938 0.4830838 1.20318199847702e-10 hm5C_site_47191 DeepMRMD:0.4830838;iRNA_m5C:1.20318199847702e-10 47192 chr2 238419407 238419407 1 + G T LUAD 238419404 + 238419384 238419424 41 GCCGCGTCCACCCGGAGGAGCAGGGCTGGATCTGTGACCCC GCCGCGTCCACCCGGAGGAGCAGTGCTGGATCTGTGACCCC < 41bp 0.883654950634998 0.561515032162911 0.91452014 0.6771603 prediction 0.644279836944174 Functional Loss - MLPH ENSG00000115648 CDS Human protein_coding chr2:238419404 chr2:238419407 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51840 0 0 0 0 1 Nucleus 0.500231644406839 0.500231643921092 0.47471968 9.71493330226281e-10 hm5C_site_47192 DeepMRMD:0.47471968;iRNA_m5C:9.71493330226281e-10 47193 chr17 72368181 72368181 1 + G T LUSC 72368179 + 72368159 72368199 41 CGTCCCCAGGCCGGACCCGCCGGGCCATTGCTGCTGTCCTG CGTCCCCAGGCCGGACCCGCCGTGCCATTGCTGCTGTCCTG < 41bp 0.822126367868243 0.489926001522245 0.9288764 0.8126764 prediction 0.644252735736486 Functional Loss - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72368179 chr17:72368181 synonymous SNV . 0 23 hm5C_associated_SNPs_51841 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0.2324 1.11022302462516e-15 hm5C_site_47193 DeepMRMD:0.2324;iRNA_m5C:1.11022302462516e-15 47194 chrX 23398142 23398142 1 + G T HNSC 23398140 + 23398120 23398160 41 CCTCACTGAGGGAAGATTTCCAGAAGACCAGCCGCGTATCA CCTCACTGAGGGAAGATTTCCATAAGACCAGCCGCGTATCA < 41bp 0.829145213972453 0.507022106312184 0.9166161 0.28643584 prediction 0.644246215320538 Functional Loss - PTCHD1 ENSG00000165186 CDS Human protein_coding chrX:23398140 chrX:23398142 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_51842 0 0 0 0 0 exosome 0.500231643921093 0.500231643921085 0.8332322 1.57651669496772e-14 hm5C_site_47194 DeepMRMD:0.8332322;iRNA_m5C:1.57651669496772e-14 47195 chr6 112671283 112671283 1 + G T LUAD 112671280 + 112671260 112671300 41 CTCAGTGTAAGAAGATCCACCACGATCTGACAAAAGATCCC CTCAGTGTAAGAAGATCCACCACTATCTGACAAAAGATCCC < 41bp 0.861309543030949 0.5391954473585 0.004374534 0.0023037493 prediction 0.644228191344896 Functional Loss - RFPL4B ENSG00000251258 CDS Human protein_coding chr6:112671280 chr6:112671283 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_51843 0 0 0 0 0 unknown 0.500231643954074 0.500231643921117 0 6.59139409719955e-11 hm5C_site_47195 DeepMRMD:0;iRNA_m5C:6.59139409719955e-11 47196 chr9 136513045 136513045 1 + G T STAD 136513042 + 136513022 136513062 41 TCAACGCGGGGATCATGGAGCTGGGACTGGTGTACACGCCA TCAACGCGGGGATCATGGAGCTGTGACTGGTGTACACGCCA < 41bp 0.822109535024607 0.444621817594065 0.8083152 0.5823875 prediction 0.644219070049215 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136513042 chr9:136513045 stopgain 0.997 1 24 hm5C_associated_SNPs_51844 0 0 0 0 2 cytosol 0.500231906456698 0.500231662635373 0.4518554 4.87642651147979e-07 hm5C_site_47196 DeepMRMD:0.4518554;iRNA_m5C:4.87642651147979e-07 47197 chr14 56757108 56757108 1 + G T UCEC 56757105 + 56757085 56757125 41 TCCCAGCCCGGGGTCTGGCGCGAGATCTCTGTCTGTGGAGA TCCCAGCCCGGGGTCTGGCGCGATATCTCTGTCTGTGGAGA < 41bp 0.868744760489084 0.546638468985813 0.9176873 0.2116439 prediction 0.644212583006541 Functional Loss - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56757105 chr14:56757108 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51845 0 0 0 0 1 nucleus 0.500231645739868 0.500231644262275 0.8353746 2.95518698401054e-09 hm5C_site_47197 DeepMRMD:0.8353746;iRNA_m5C:2.95518698401054e-09 47198 chr2 61258703 61258703 1 + G T GBM 61258700 + 61258680 61258720 41 TGCTTACAGTTCATTTTCTTCTGGATATGGTGCCTATGGAA TGCTTACAGTTCATTTTCTTCTGTATATGGTGCCTATGGAA < 41bp 0.822083902164172 0.480938426534593 0.22190514 0.1890814 prediction 0.644167804328344 Functional Loss - PEX13 ENSG00000162928 CDS Human protein_coding chr2:61258700 chr2:61258703 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51846 0 0 1 0 0 Ribosome 0.500231614418652 0.500231648244452 0 0 hm5C_site_47198 DeepMRMD:0;iRNA_m5C:0 47199 chr1 247712378 247712378 1 + G T LUSC 247712375 + 247712355 247712395 41 CAGCTCGTGGTTGGCAAGAGCACGAACCCGTGGTCAGATGC CAGCTCGTGGTTGGCAAGAGCACTAACCCGTGGTCAGATGC < 41bp 0.822077977209576 0.47165395222766 0.15899155 0.100814104 prediction 0.644155954419152 Functional Loss - GCSAML ENSG00000169224 CDS Human protein_coding chr1:247712375 chr1:247712378 stopgain . 0 24 hm5C_associated_SNPs_51847 0 0 0 0 0 exosome 0.500231644410736 0.500231643923648 0 9.74176517232195e-10 hm5C_site_47199 DeepMRMD:0;iRNA_m5C:9.74176517232195e-10 47200 chr5 98109838 98109838 1 + A C rs2662263 98109834 + 98109814 98109854 41 GCCGCCGAGGTTGAGCAGCGCCGCAGCCCCGGGCTCTGCCC GCCGCCGAGGTTGAGCAGCGCCGCCGCCCCGGGCTCTGCCC < 41bp 0.872552573855636 0.550491870151809 0.6646217 0.7978416 prediction 0.644121407407653 Functional Loss - RGMB ENSG00000174136 CDS Human protein_coding chr5:98109834 chr5:98109838 nonsynonymous SNV 0.621 1 25 hm5C_associated_SNPs_51848 0 0 1 0 1 nucleus 0.500231641364822 0.500231643921356 0 0 hm5C_site_47200 DeepMRMD:0;iRNA_m5C:0 47201 chr10 105762247 105762247 1 + A C UCEC 105762243 + 105762223 105762263 41 GCTTGAAAATCTGCCTGACACAGAAGACCAAGAAACTGTGG GCTTGAAAATCTGCCTGACACAGACGACCAAGAAACTGTGG < 41bp 0.851781721627855 0.529722732332284 0.11588538 0.23170024 prediction 0.644117978591142 Functional Loss - SLK ENSG00000065613 CDS Human protein_coding chr10:105762243 chr10:105762247 nonsynonymous SNV 0.841 0 25 hm5C_associated_SNPs_51849 0 0 1 0 0 Nucleus 0.500231643921812 0.500231623134122 0 4.15753793614471e-08 hm5C_site_47201 DeepMRMD:0;iRNA_m5C:4.15753793614471e-08 47202 chr11 35684861 35684861 1 + A C GBM 35684857 + 35684837 35684877 41 TACGTCCACGGCTCCCAGGCCTGGACCCCGCCAGCTGACGG TACGTCCACGGCTCCCAGGCCTGGCCCCCGCCAGCTGACGG < 41bp 0.872021226189523 0.549963705681993 0.080041975 0.070767194 prediction 0.644115041015061 Functional Loss - TRIM44 ENSG00000166326 CDS Human protein_coding chr11:35684857 chr11:35684861 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_51850 0 0 1 0 0 Ribosome 0.500231644008588 0.50023164394775 0 1.21676002606819e-10 hm5C_site_47202 DeepMRMD:0;iRNA_m5C:1.21676002606819e-10 47203 chr22 39418966 39418966 1 + G T LGG 39418964 + 39418944 39418984 41 CTCAAATCTCCTTTGGGACACAGGGGTCTTTCGAGGCCCGG CTCAAATCTCCTTTGGGACACATGGGTCTTTCGAGGCCCGG < 41bp 0.832046023935735 0.509993985134446 0.88823986 0.29664546 prediction 0.644104077602577 Functional Loss - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39418964 chr22:39418966 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_51851 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0.77647972 0 hm5C_site_47203 DeepMRMD:0.77647972;iRNA_m5C:0 47204 chr2 162251702 162251702 1 + G T UCEC 162251699 + 162251679 162251719 41 AAAGAGATGTTGGAATTAGCCAAGAATTACAATAAGGTAAA AAAGAGATGTTGGAATTAGCCAATAATTACAATAAGGTAAA < 41bp 0.822048591652778 0.497026846376799 0.3134998 0.21044716 prediction 0.644097183305557 Functional Loss - PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162251699 chr2:162251702 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51852 0 0 1 0 1 Cytosol 0.500231643922669 0.500231643920466 0 4.404254738688e-12 hm5C_site_47204 DeepMRMD:0;iRNA_m5C:4.404254738688e-12 47205 chr3 183994779 183994779 1 + G T UCEC 183994776 + 183994756 183994796 41 TACTGCTGGCTGCACTGCTTCTGGGCTGCCTTGTGGCCCTA TACTGCTGGCTGCACTGCTTCTGTGCTGCCTTGTGGCCCTA < 41bp 0.82203986154107 0.458266558125199 0.88606197 0.1895149 prediction 0.644079723082139 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:183994776 chr3:183994779 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_51853 0 0 0 0 1 Ribosome 0.500231635618772 0.500886245832679 0.77212394 0 hm5C_site_47205 DeepMRMD:0.77212394;iRNA_m5C:0 47206 chr1 170129736 170129736 1 + G T UCEC 170129733 + 170129713 170129753 41 CCAGAGCTAAACTTTTCTACCAAGAAGTACCAGCCACAGAA CCAGAGCTAAACTTTTCTACCAATAAGTACCAGCCACAGAA < 41bp 0.822032799774423 0.465921387849674 0.34618396 0.02137959 prediction 0.644065599548846 Functional Loss - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170129733 chr1:170129736 stopgain 0.985 0 24 hm5C_associated_SNPs_51854 0 0 0 0 2 unknown 0.500231643921124 0.500231643920752 0 7.4495964952348e-13 hm5C_site_47206 DeepMRMD:0;iRNA_m5C:7.4495964952348e-13 47207 chr17 73738716 73738716 1 + G T LUAD 73738713 + 73738693 73738733 41 GCGTGGAGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGG GCGTGGAGCTGGTGGACGTACGGTTGCCCCTCTTTATCCGG < 41bp 0.822029172064199 0.458440079944531 0.4124465 0.09655601 prediction 0.644058344128397 Functional Loss - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73738713 chr17:73738716 nonsynonymous SNV 0.954 4 24 hm5C_associated_SNPs_51855 0 0 0 0 1 Cytosol 0.500231643921093 0.500231643921092 0 4.44089209850063e-16 hm5C_site_47207 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 47208 chr12 111748219 111748219 1 + G T LUAD 111748217 + 111748197 111748237 41 TGGTGGTGGGGGCGGAGCGGCGGGGCCCGGGGCAGAGGAGG TGGTGGTGGGGGCGGAGCGGCGTGGCCCGGGGCAGAGGAGG < 41bp 0.822019154638133 0.493083931412204 0.90252995 0.87537515 prediction 0.644038309276265 Functional Loss - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111748217 chr12:111748219 nonsynonymous SNV 0.006 1 23 hm5C_associated_SNPs_51856 0 0 0 0 0 exosome 0.500231643922281 0.500231643921093 0.0543096000000001 2.37765362953724e-12 hm5C_site_47208 DeepMRMD:0.0543096000000001;iRNA_m5C:2.37765362953724e-12 47209 chr19 46998476 46998476 1 + G T UCEC 46998473 + 46998453 46998493 41 CCTCCAGACCCCATCCTTGCCTGGGATCTCCCTGGGAATGG CCTCCAGACCCCATCCTTGCCTGTGATCTCCCTGGGAATGG < 41bp 0.863006694726127 0.540998832867504 0.3783862 0.04361862 prediction 0.644015723717246 Functional Loss - PNMA8B ENSG00000204850;ENSG00000204851 CDS Human other chr19:46998473 chr19:46998476 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_51857 0 0 0 0 0 unknown 0.500231643921103 0.5002316439211 0 4.66293670342566e-15 hm5C_site_47209 DeepMRMD:0;iRNA_m5C:4.66293670342566e-15 47210 chr10 82403771 82403771 1 + G T GBM 82403768 + 82403748 82403788 41 GGAGGAAATTATCACTGTTTCAGGAGGAGAGTTACTTCAGG GGAGGAAATTATCACTGTTTCAGTAGGAGAGTTACTTCAGG < 41bp 0.856100864997767 0.534108905483287 0.91208506 0.40345824 prediction 0.643983919028959 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82403768 chr10:82403771 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_51858 0 0 0 0 1 exosome 0.50023164381005 0.500231643921047 0.82417012 0 hm5C_site_47210 DeepMRMD:0.82417012;iRNA_m5C:0 47211 chr22 18844884 18844884 1 + G T SKCM 18844881 + 18844861 18844901 41 GAAGAGGGGCTCGGGCAGCTCACGGAAATACAGCTTCAGCG GAAGAGGGGCTCGGGCAGCTCACTGAAATACAGCTTCAGCG < 41bp 0.821990701199553 0.491456735015525 0.30447793 0.11431804 prediction 0.643981402399106 Functional Loss - LOC102725072 ENSG00000215544 ncRNA_exonic Human unprocessed_pseudogene chr22:18844881 chr22:18844884 . . 0 24 hm5C_associated_SNPs_51859 0 0 0 0 0 unknown 0.500231643921092 0.500231634244605 0 1.93529752223753e-08 hm5C_site_47211 DeepMRMD:0;iRNA_m5C:1.93529752223753e-08 47212 chr1 215768773 215768773 1 + G T COAD 215768770 + 215768750 215768790 41 GTTGGTGGCCACGAGTCATACAGGGAAAGTGGGAGTGTGGA GTTGGTGGCCACGAGTCATACAGTGAAAGTGGGAGTGTGGA < 41bp 0.862338846246502 0.540359262424475 0.86930466 0.12794659 prediction 0.643959167644053 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215768770 chr1:215768773 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51860 0 0 1 0 2 Ribosome 0.500231643921872 0.500231644153868 0.73860932 0 hm5C_site_47212 DeepMRMD:0.73860932;iRNA_m5C:0 47213 chr19 55854408 55854408 1 + A C rs10416740 55854404 + 55854384 55854424 41 CTACCGTGGTGCCGCTGGAGCAGGAGACCCCGGATGTGACC CTACCGTGGTGCCGCTGGAGCAGGCGACCCCGGATGTGACC < 41bp 0.821968727787185 0.499283526060104 0.9067067 0.9054103 prediction 0.64393745557437 Functional Loss - KMT5C ENSG00000133247;ENSG00000267531 intronic Human other chr19:55854404 chr19:55854408 . . 0 25 hm5C_associated_SNPs_51861 0 0 0 0 0 chromatin 0.500231678986361 0.500231644368952 0.00259279999999995 6.9234818322883e-08 hm5C_site_47213 DeepMRMD:0.00259279999999995;iRNA_m5C:6.9234818322883e-08 47214 chr3 45988638 45988638 1 + G T OV 45988635 + 45988615 45988655 41 AATCAAAACACTGCTTCATGCTGGAGGCTTCCAGAAGCACA AATCAAAACACTGCTTCATGCTGTAGGCTTCCAGAAGCACA < 41bp 0.861366344360246 0.539408351700145 0.1932312 0.06325537 prediction 0.643915985320202 Functional Loss - CXCR6 ENSG00000172215 CDS Human protein_coding chr3:45988635 chr3:45988638 nonsynonymous SNV 0.715 1 24 hm5C_associated_SNPs_51862 0 0 0 0 0 exosome 0.500231643951135 0.50023164346902 0 9.64229585065368e-10 hm5C_site_47214 DeepMRMD:0;iRNA_m5C:9.64229585065368e-10 47215 chr1 151065743 151065743 1 + G T UCEC 151065740 + 151065720 151065760 41 GGGCCACAGAGCGCCACCATCGAGATGTCGTAGAGTTACTT GGGCCACAGAGCGCCACCATCGATATGTCGTAGAGTTACTT < 41bp 0.866704887641302 0.544759689681937 0.9063407 0.12109551 prediction 0.64389039591873 Functional Loss - GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151065740 chr1:151065743 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_51863 0 0 1 0 0 chromatin 0.500231647869294 0.500231643920538 0.8126814 7.89751197771693e-09 hm5C_site_47215 DeepMRMD:0.8126814;iRNA_m5C:7.89751197771693e-09 47216 chr12 4705384 4705384 1 + G T LUAD 4705381 + 4705361 4705401 41 TCGGGAAGGGGTCCTTTGGACAGGTGGCCAAGTGCTTGGAT TCGGGAAGGGGTCCTTTGGACAGTTGGCCAAGTGCTTGGAT < 41bp 0.821920043969144 0.465813484509621 0.86113524 0.17631114 prediction 0.643840087938288 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4705381 chr12:4705384 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51864 0 0 0 0 2 Ribosome 0.50023164392108 0.500231643921315 0.72227048 0 hm5C_site_47216 DeepMRMD:0.72227048;iRNA_m5C:0 47217 chr22 39441096 39441096 1 + G T rs2020390 39441093 + 39441073 39441113 41 TGGCGAAGCTGGCCGAATTCCTGGCTGAGCACCCCAATGTC TGGCGAAGCTGGCCGAATTCCTGTCTGAGCACCCCAATGTC < 41bp 0.879186802839347 0.55727326505432 0.32851973 0.13668507 prediction 0.643827075570053 Functional Loss - APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39441093 chr22:39441096 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_51865 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921093 0 0 hm5C_site_47217 DeepMRMD:0;iRNA_m5C:0 47218 chr10 70097735 70097735 1 + A C STAD 70097731 + 70097711 70097751 41 CAGAAAATGCTCTGGGGAAACACAAGGAAAGAATAGGGCAC CAGAAAATGCTCTGGGGAAACACACGGAAAGAATAGGGCAC < 41bp 0.822651825750307 0.50078587906081 0.4691269 0.21000966 prediction 0.643731893378994 Functional Loss - HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70097731 chr10:70097735 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_51866 0 0 1 0 1 Cytosol 0.500231643921093 0.500231674372772 0 0 hm5C_site_47218 DeepMRMD:0;iRNA_m5C:0 47219 chr11 552671 552671 1 + G T UCEC 552668 + 552648 552688 41 CAAGTGCACCAGGCAGAGCCCAAGACTCCCTCCAGCCCCCC CAAGTGCACCAGGCAGAGCCCAATACTCCCTCCAGCCCCCC < 41bp 0.821865909052293 0.458890193987108 0.25329268 0.09053883 prediction 0.643731818104586 Functional Loss - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:552668 chr11:552671 nonsynonymous SNV 0.271 0 24 hm5C_associated_SNPs_51867 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_47219 DeepMRMD:0;iRNA_m5C:0 47220 chr15 89719209 89719209 1 + G T UCEC 89719207 + 89719187 89719227 41 TGTGCTGCGTCAGCGTGTGCCAGGGGTACAGTGCACTGAGG TGTGCTGCGTCAGCGTGTGCCATGGGTACAGTGCACTGAGG < 41bp 0.83519372405506 0.513332199746824 0.9300581 0.33680376 prediction 0.643723048616473 Functional Loss - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89719207 chr15:89719209 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_51868 0 0 1 0 1 Nucleus 0.500231644776074 0.500231600112576 0.8601162 8.93269977986222e-08 hm5C_site_47220 DeepMRMD:0.8601162;iRNA_m5C:8.93269977986222e-08 47221 chr16 88037961 88037961 1 + G T UCEC 88037958 + 88037938 88037978 41 CGGCAGAACGCCATTGTAGCCAAGATGGAAGACCCCTTGAG CGGCAGAACGCCATTGTAGCCAATATGGAAGACCCCTTGAG < 41bp 0.821842038086812 0.46913379375346 0.9043629 0.3518043 prediction 0.643684076173625 Functional Loss - BANP ENSG00000172530 CDS Human protein_coding chr16:88037958 chr16:88037961 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51869 0 0 1 0 1 Cytosol 0.500231643920115 0.500231643921666 0.8087258 0 hm5C_site_47221 DeepMRMD:0.8087258;iRNA_m5C:0 47222 chr4 38690565 38690565 1 + G T LUAD 38690562 + 38690542 38690582 41 TCGCGGCATGGAATACGGAGCCCGGGGATCCTGCCCGTCAT TCGCGGCATGGAATACGGAGCCCTGGGATCCTGCCCGTCAT < 41bp 0.821836597914154 0.466593014177845 0.7923975 0.3262652 prediction 0.643673195828308 Functional Loss - KLF3 ENSG00000109787 CDS Human protein_coding chr4:38690562 chr4:38690565 synonymous SNV . 0 24 hm5C_associated_SNPs_51870 0 0 1 0 0 Cytosol 0.500231643921093 0.500231643921092 0.584795 2.22044604925031e-16 hm5C_site_47222 DeepMRMD:0.584795;iRNA_m5C:2.22044604925031e-16 47223 chrX 150912676 150912676 1 + G T UCEC 150912673 + 150912653 150912693 41 GTGACTGAGTACCCTGATGCCAAGAAAGTCCTAGAAGAGAG GTGACTGAGTACCCTGATGCCAATAAAGTCCTAGAAGAGAG < 41bp 0.821823244024308 0.467137531270798 0.20356795 0.067914605 prediction 0.643646488048616 Functional Loss - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150912673 chrX:150912676 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51871 0 0 0 0 0 unknown 0.500231643920567 0.500231643926975 0 0 hm5C_site_47223 DeepMRMD:0;iRNA_m5C:0 47224 chr2 135012198 135012198 1 + G T LUSC 135012195 + 135012175 135012215 41 TGTGGTGGATGGGCCATACGCTGGAGTCATGACAGCTTATG TGTGGTGGATGGGCCATACGCTGTAGTCATGACAGCTTATG < 41bp 0.853970444806404 0.532147509216698 0.5209425 0.10946563 prediction 0.643645871179412 Functional Loss - MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135012195 chr2:135012198 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_51872 0 0 1 0 1 Ribosome 0.500231628823227 0.500231825738947 0.041885 0 hm5C_site_47224 DeepMRMD:0.041885;iRNA_m5C:0 47225 chr12 55715314 55715314 1 + A C OV 55715310 + 55715290 55715330 41 GCAAGGAAGACTGTATTTTTCACAAGCACATGAAATGGTAT GCAAGGAAGACTGTATTTTTCACACGCACATGAAATGGTAT < 41bp 0.84315599906141 0.521356786333139 0.20580181 0.2240845 prediction 0.643598425456542 Functional Loss - OR6C1 ENSG00000205330 CDS Human protein_coding chr12:55715310 chr12:55715314 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_51873 0 0 0 0 0 unknown 0.50023164391599 0.500231645316717 0 0 hm5C_site_47225 DeepMRMD:0;iRNA_m5C:0 47226 chr2 219000278 219000278 1 + G T LUAD 219000275 + 219000255 219000295 41 GGCAGAAGCACCGGGCCATGCGGGTCATCTTTGCTGTCGTC GGCAGAAGCACCGGGCCATGCGGTTCATCTTTGCTGTCGTC < 41bp 0.881858679187497 0.560063654217905 0.4973542 0.22088307 prediction 0.643590049939185 Functional Loss - CXCR2 ENSG00000180871 CDS Human protein_coding chr2:219000275 chr2:219000278 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_51874 0 0 0 0 0 exosome 0.50023164337204 0.500227185729702 0 8.91528467583669e-06 hm5C_site_47226 DeepMRMD:0;iRNA_m5C:8.91528467583669e-06 47227 chr12 21349891 21349891 1 + A C SKCM 21349887 + 21349867 21349907 41 TTATTTATTCTAGGCACTATCAGGATAACTCCTACTGATTC TTATTTATTCTAGGCACTATCAGGCTAACTCCTACTGATTC < 41bp 0.857428021656314 0.535636451096328 0.9438978 0.9391136 prediction 0.643583141119972 Functional Loss - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21349887 chr12:21349891 nonsynonymous SNV 0.632 3 25 hm5C_associated_SNPs_51875 0 0 0 0 1 exosome 0.500231643921136 0.500231425976294 0.00956840000000003 4.35889683902957e-07 hm5C_site_47227 DeepMRMD:0.00956840000000003;iRNA_m5C:4.35889683902957e-07 47228 chr11 109294474 109294474 1 + G T HNSC 109294471 + 109294451 109294491 41 GCAACACGGGTGCCCGCGGCCCAGGCGCAGTAGGCAGCGGC GCAACACGGGTGCCCGCGGCCCATGCGCAGTAGGCAGCGGC < 41bp 0.821791137085141 0.4691858505894 0.3175769 0.0689024 prediction 0.643582274170283 Functional Loss - C11orf87 ENSG00000185742 CDS Human protein_coding chr11:109294471 chr11:109294474 nonsynonymous SNV 0.008 3 24 hm5C_associated_SNPs_51876 0 0 0 0 0 exosome 0.500231703633732 0.500231666002316 0 7.52628310785042e-08 hm5C_site_47228 DeepMRMD:0;iRNA_m5C:7.52628310785042e-08 47229 chr16 10851764 10851764 1 + G T THCA 10851761 + 10851741 10851781 41 CAGTTCCTCCGAGATGTGGACTGGGGAGAGGTCGACTACCT CAGTTCCTCCGAGATGTGGACTGTGGAGAGGTCGACTACCT < 41bp 0.821779771930008 0.447987603857784 0.28860998 0.07173237 prediction 0.643559543860015 Functional Loss - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10851761 chr16:10851764 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_51877 0 0 0 0 1 Ribosome 0.50023164392112 0.500231895926685 0 0 hm5C_site_47229 DeepMRMD:0;iRNA_m5C:0 47230 chr5 140741739 140741739 1 + G T LUAD 140741737 + 140741717 140741757 41 TGCCAGACCTCAGCGACCGCCGGGAGCCCTCTGACCCCCAG TGCCAGACCTCAGCGACCGCCGTGAGCCCTCTGACCCCCAG < 41bp 0.824644727146056 0.502873349514184 0.9048232 0.8179084 prediction 0.643542755263744 Functional Loss - PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741737 chr5:140741739 synonymous SNV . 0 23 hm5C_associated_SNPs_51878 0 0 0 0 0 exosome 0.500231611204129 0.500231626056161 0.1738296 0 hm5C_site_47230 DeepMRMD:0.1738296;iRNA_m5C:0 47231 chr19 50949242 50949242 1 + G T UCEC 50949240 + 50949220 50949260 41 TCATCTTCTCAGACGTGGTCCAGGAGGACAGGGGTCGCTAT TCATCTTCTCAGACGTGGTCCATGAGGACAGGGGTCGCTAT < 41bp 0.822688029817605 0.500928971666132 0.8619663 0.1576351 prediction 0.643518116302946 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50949240 chr19:50949242 nonsynonymous SNV 0.101 0 23 hm5C_associated_SNPs_51879 0 0 0 0 1 exosome 0.50023164392118 0.500231611421912 0.7239326 6.49985372191964e-08 hm5C_site_47231 DeepMRMD:0.7239326;iRNA_m5C:6.49985372191964e-08 47232 chr8 79588065 79588065 1 + G T UCEC 79588062 + 79588042 79588082 41 GTTGGAGAATTGTTACCTTGCAAGATTTGTGGAAGAACATT GTTGGAGAATTGTTACCTTGCAATATTTGTGGAAGAACATT < 41bp 0.837212578775085 0.515463178500614 0.38648352 0.12529415 prediction 0.643498800548943 Functional Loss - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79588062 chr8:79588065 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51880 0 0 0 0 2 cytosol 0.500231650100414 0.500235343052595 0 0 hm5C_site_47232 DeepMRMD:0;iRNA_m5C:0 47233 chr2 223917839 223917839 1 + G T UCEC 223917837 + 223917817 223917857 41 TGTCGGGCCTGAGGTCGGTGCAGGTGCCCCTGATGCTGAAC TGTCGGGCCTGAGGTCGGTGCATGTGCCCCTGATGCTGAAC < 41bp 0.821723532245631 0.499904247605104 0.79675686 0.30406776 prediction 0.643447064491261 Functional Loss - KCNE4 ENSG00000152049 CDS Human protein_coding chr2:223917837 chr2:223917839 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_51881 0 0 0 0 0 Nucleus 0.500231643925151 0.500231643882444 0.59351372 8.54127879534872e-11 hm5C_site_47233 DeepMRMD:0.59351372;iRNA_m5C:8.54127879534872e-11 47234 chr17 72739479 72739479 1 + G T KIRC 72739476 + 72739456 72739496 41 AAATCTTCTTTCGACAACATCAGGGTAGGTCCTCCCTTCCC AAATCTTCTTTCGACAACATCAGTGTAGGTCCTCCCTTCCC < 41bp 0.82170756198582 0.44605864139692 0.94121385 0.30275604 prediction 0.64341512397164 Functional Loss - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72739476 chr17:72739479 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_51882 0 0 0 1 2 nucleus 0.500231643921092 0.500231643782888 0.8824277 2.76409117816456e-10 hm5C_site_47234 DeepMRMD:0.8824277;iRNA_m5C:2.76409117816456e-10 47235 chrX 34961533 34961533 1 + G T LUAD 34961531 + 34961511 34961551 41 GCCCGCGGCCTCCCGAGACTCCGGTGTCCCGTCTCCGTCCT GCCCGCGGCCTCCCGAGACTCCTGTGTCCCGTCTCCGTCCT < 41bp 0.839300079458902 0.517606258266662 0.8650393 0.07360044 prediction 0.643387642384481 Functional Loss - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961531 chrX:34961533 synonymous SNV . 0 23 hm5C_associated_SNPs_51883 0 0 0 0 0 unknown 0.500231643914733 0.500231643921092 0.7300786 0 hm5C_site_47235 DeepMRMD:0.7300786;iRNA_m5C:0 47236 chr2 128184779 128184779 1 + G T BLCA 128184776 + 128184756 128184796 41 GCCCACTGCATGGATGAGTCCAAGAAGCTCCTTGTCAGGCT GCCCACTGCATGGATGAGTCCAATAAGCTCCTTGTCAGGCT < 41bp 0.821670727757813 0.457324340157071 0.63956034 0.07852024 prediction 0.643341455515627 Functional Loss - PROC ENSG00000115718 CDS Human protein_coding chr2:128184776 chr2:128184779 nonsynonymous SNV 0.338 1 24 hm5C_associated_SNPs_51884 0 0 1 0 2 nucleus 0.500231662273016 0.500231554923629 0.27912068 2.14698774758659e-07 hm5C_site_47236 DeepMRMD:0.27912068;iRNA_m5C:2.14698774758659e-07 47237 chr15 22369133 22369133 1 + G T HNSC 22369130 + 22369110 22369150 41 TGTGACATCACACAGGTTGTCCGGATTGCCTGTGCCAACAC TGTGACATCACACAGGTTGTCCGTATTGCCTGTGCCAACAC < 41bp 0.859625570110844 0.537956240859577 0.23009217 0.0126235485 prediction 0.643338658502533 Functional Loss - OR4M2 ENSG00000182974 CDS Human protein_coding chr15:22369130 chr15:22369133 synonymous SNV . 0 24 hm5C_associated_SNPs_51885 0 0 0 0 0 unknown 0.50023164056963 0.500208718068485 0 4.58450022902124e-05 hm5C_site_47237 DeepMRMD:0;iRNA_m5C:4.58450022902124e-05 47238 chr1 186276363 186276363 1 + G T HNSC 186276360 + 186276340 186276380 41 GAGCCTGCACCCACCACTCCCAAGGAGCCTGCACCCACCAC GAGCCTGCACCCACCACTCCCAATGAGCCTGCACCCACCAC < 41bp 0.821666894338901 0.4490576021227 0.59062535 0.029653579 prediction 0.643333788677801 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276360 chr1:186276363 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_51886 0 0 0 0 0 nucleoplasm 0.500231643921091 0.500231643592495 0.1812507 6.57193632846997e-10 hm5C_site_47238 DeepMRMD:0.1812507;iRNA_m5C:6.57193632846997e-10 47239 chr1 156084943 156084943 1 + G T STAD 156084940 + 156084920 156084960 41 AGCCGCGAGGTGTCCGGCATCAAGGCCGCCTACGAGGCCGA AGCCGCGAGGTGTCCGGCATCAATGCCGCCTACGAGGCCGA < 41bp 0.864069203688537 0.542407041848052 0.912987 0.6362736 prediction 0.64332432368097 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156084940 chr1:156084943 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51887 0 0 1 0 0 Cytosol 0.500231651658987 0.500231643964338 0.5534268 1.53892980581105e-08 hm5C_site_47239 DeepMRMD:0.5534268;iRNA_m5C:1.53892980581105e-08 47240 chr19 50208306 50208306 1 + G T LUSC 50208303 + 50208283 50208323 41 CCACGCCTCTGCAGGCAGCTCGCGCTGGGAATGCCGTCCAT CCACGCCTCTGCAGGCAGCTCGCTCTGGGAATGCCGTCCAT < 41bp 0.821656645301982 0.442716213149723 0.18765998 0.066131145 prediction 0.643313290603965 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208303 chr19:50208306 nonsynonymous SNV 0.010 5 24 hm5C_associated_SNPs_51888 0 0 0 0 3 exosome 0.500231646291854 0.500231643936342 0 4.71102445942506e-09 hm5C_site_47240 DeepMRMD:0;iRNA_m5C:4.71102445942506e-09 47241 chr15 102292994 102292994 1 + A C rs577088436 102292990 + 102292970 102293010 41 TCTCAGAGCTGCTGTCCAACCTGCACTCGCGTGGGAACAAG TCTCAGAGCTGCTGTCCAACCTGCCCTCGCGTGGGAACAAG < 41bp 0.821650165785226 0.47353158886291 0.28720516 0.056119323 prediction 0.643300331570453 Functional Loss - LOC100128108;OR4F6 ENSG00000259660 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102292990 chr15:102292994 . . 0 25 hm5C_associated_SNPs_51889 0 0 0 0 0 unknown 0.500231643884899 0.500228741895013 0 5.8039797725673e-06 hm5C_site_47241 DeepMRMD:0;iRNA_m5C:5.8039797725673e-06 47242 chrX 90690736 90690736 1 + G T HNSC 90690733 + 90690713 90690753 41 TCACCCGAATCTGCCGTGATCCGGTGACCCGCAGCCCCCTG TCACCCGAATCTGCCGTGATCCGTTGACCCGCAGCCCCCTG < 41bp 0.869086476412757 0.547437194411797 0.9238716 0.21199352 prediction 0.643298564001919 Functional Loss - PABPC5 ENSG00000174740 CDS Human protein_coding chrX:90690733 chrX:90690736 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_51890 0 0 0 0 0 exosome 0.500231232096873 0.500231643848451 0.8477432 0 hm5C_site_47242 DeepMRMD:0.8477432;iRNA_m5C:0 47243 chr11 60638480 60638480 1 + G T COAD 60638477 + 60638457 60638497 41 ACTTCGTCCTCGTAGTGTCCCAAGAAATGGCCTTGACACAC ACTTCGTCCTCGTAGTGTCCCAATAAATGGCCTTGACACAC < 41bp 0.876968265899241 0.555321509612694 0.09084886 0.032331258 prediction 0.643293512573093 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60638477 chr11:60638480 stopgain 0.630 0 24 hm5C_associated_SNPs_51891 0 0 0 0 1 exosome 0.500231498114536 0.500231495412073 0 5.40492606226906e-09 hm5C_site_47243 DeepMRMD:0;iRNA_m5C:5.40492606226906e-09 47244 chr7 2418821 2418821 1 + A C LUAD 2418817 + 2418797 2418837 41 TGGAAGATTTCCGGAAGTACCGGAAAATGGCCCAGGAGCTC TGGAAGATTTCCGGAAGTACCGGACAATGGCCCAGGAGCTC < 41bp 0.821637925851896 0.444438728473446 0.8852337 0.81661487 prediction 0.643275851703793 Functional Loss - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2418817 chr7:2418821 nonsynonymous SNV 0.978 1 25 hm5C_associated_SNPs_51892 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921093 0.13723766 0 hm5C_site_47244 DeepMRMD:0.13723766;iRNA_m5C:0 47245 chrX 49021059 49021059 1 + G T LUSC 49021056 + 49021036 49021076 41 ATCTCCCAGCTGTTAGCGTGCTGGACTCTGCGGACATAGAG ATCTCCCAGCTGTTAGCGTGCTGTACTCTGCGGACATAGAG < 41bp 0.851930978782103 0.530310082431336 0.16486898 0.10057297 prediction 0.643241792701534 Functional Loss - MAGIX ENSG00000017621 CDS Human other chrX:49021056 chrX:49021059 nonsynonymous SNV 0.291 1 24 hm5C_associated_SNPs_51893 0 0 0 0 2 nucleus 0.500233143000378 0.500231643149202 0 2.99970235073665e-06 hm5C_site_47245 DeepMRMD:0;iRNA_m5C:2.99970235073665e-06 47246 chr7 99649187 99649187 1 + G T rs566355968 99649184 + 99649164 99649204 41 GCCTCGGGCCTCCCAAAGTGCTGGAATTACAGGTGTGAGCC GCCTCGGGCCTCCCAAAGTGCTGTAATTACAGGTGTGAGCC < 41bp 0.831811541911265 0.510196942240871 0.6055251 0.41329592 prediction 0.643229199340788 Functional Loss - ZSCAN21 ENSG00000166529 UTR5 Human protein_coding chr7:99649184 chr7:99649187 . . 0 24 hm5C_associated_SNPs_51894 0 0 0 0 2 chromatin 0.500231643953783 0.500231643921086 0.2110502 6.53939125072611e-11 hm5C_site_47246 DeepMRMD:0.2110502;iRNA_m5C:6.53939125072611e-11 47247 chr11 94731653 94731653 1 + G T LUAD 94731650 + 94731630 94731670 41 AGTTACCCAGGAGAGCAGCGCTGGGCCTGAGACAACTCCCT AGTTACCCAGGAGAGCAGCGCTGTGCCTGAGACAACTCCCT < 41bp 0.821613619243315 0.442080611648881 0.52116 0.27372327 prediction 0.64322723848663 Functional Loss - KDM4D ENSG00000186280 CDS Human protein_coding chr11:94731650 chr11:94731653 nonsynonymous SNV 0.077 3 24 hm5C_associated_SNPs_51895 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.0423199999999999 0 hm5C_site_47247 DeepMRMD:0.0423199999999999;iRNA_m5C:0 47248 chr1 186276646 186276646 1 + A C SKCM 186276642 + 186276622 186276662 41 GAACCTGCACCCACCACCACCAAGAAGCCTGCACCCACCAC GAACCTGCACCCACCACCACCAAGCAGCCTGCACCCACCAC < 41bp 0.821600341916806 0.447092042056636 0.40666112 0.13772413 prediction 0.643200683833612 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276642 chr1:186276646 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_51896 0 0 0 0 0 nucleoplasm 0.500231643921093 0.500231643921095 0 0 hm5C_site_47248 DeepMRMD:0;iRNA_m5C:0 47249 chr11 7509403 7509403 1 + G T UCEC 7509400 + 7509380 7509420 41 AAGCAACGAGGGCATACATTCAAGAATTCCAAGAGTTCTCA AAGCAACGAGGGCATACATTCAATAATTCCAAGAGTTCTCA < 41bp 0.821597961542807 0.4713465444575 0.28721654 0.08434698 prediction 0.643195923085613 Functional Loss - OLFML1 ENSG00000183801 CDS Human protein_coding chr11:7509400 chr11:7509403 stopgain 1.000 1 24 hm5C_associated_SNPs_51897 0 0 0 0 1 exosome 0.500231643921099 0.500231646408182 0 0 hm5C_site_47249 DeepMRMD:0;iRNA_m5C:0 47250 chr19 50957354 50957354 1 + G T SARC 50957352 + 50957332 50957372 41 GCTTTGTGATTGAGAGTGCGCAGCGGGAAGACGAGGGCCGC GCTTTGTGATTGAGAGTGCGCATCGGGAAGACGAGGGCCGC < 41bp 0.821589894113904 0.495497033981157 0.62564003 0.08908185 prediction 0.643179788227809 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957352 chr19:50957354 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_51898 0 0 0 0 2 exosome 0.500231643928259 0.500231643921581 0.25128006 1.33553168524259e-11 hm5C_site_47250 DeepMRMD:0.25128006;iRNA_m5C:1.33553168524259e-11 47251 chr2 131486877 131486877 1 + G T LUAD 131486874 + 131486854 131486894 41 GTGCCCAGCTCCATGCTGTACTGGCTTTTCCTTCCCTCAAG GTGCCCAGCTCCATGCTGTACTGTCTTTTCCTTCCCTCAAG < 41bp 0.821588616030064 0.457780173217015 0.18543994 0.054589957 prediction 0.643177232060129 Functional Loss - GPR148 ENSG00000173302 CDS Human protein_coding chr2:131486874 chr2:131486877 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_51899 0 0 0 0 0 unknown 0.500231643921104 0.500231643921092 0 2.39808173319034e-14 hm5C_site_47251 DeepMRMD:0;iRNA_m5C:2.39808173319034e-14 47252 chr17 4352620 4352620 1 + G T ESCA 4352617 + 4352597 4352637 41 TGGGCCCCCAAGTTTCTGCTCGAGGCACGCGTGGTTCACGG TGGGCCCCCAAGTTTCTGCTCGATGCACGCGTGGTTCACGG < 41bp 0.821572736900763 0.437824398335904 0.9110753 0.2450709 prediction 0.643145473801526 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4352617 chr17:4352620 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_51900 0 0 0 0 2 exosome 0.500231646121362 0.50023164482895 0.8221506 2.58482479864597e-09 hm5C_site_47252 DeepMRMD:0.8221506;iRNA_m5C:2.58482479864597e-09 47253 chr12 81111266 81111266 1 + G T LUSC 81111263 + 81111243 81111283 41 TGCAGGAGTTGCTGAGAGAGCAGGTGGAGAACTACTATAGC TGCAGGAGTTGCTGAGAGAGCAGTTGGAGAACTACTATAGC < 41bp 0.862941466193161 0.541370328237274 0.92695653 0.9062848 prediction 0.643142275911774 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81111263 chr12:81111266 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51901 0 0 0 0 1 unknown 0.500231643921319 0.500231643921224 0.04134346 1.90292226420752e-13 hm5C_site_47253 DeepMRMD:0.04134346;iRNA_m5C:1.90292226420752e-13 47254 chr6 26388327 26388327 1 + G T UCEC 26388324 + 26388304 26388344 41 GCATATCTGGAGGGTGGTACCCAGAGCCCCTCACAGTGTGG GCATATCTGGAGGGTGGTACCCATAGCCCCTCACAGTGTGG < 41bp 0.821550847451853 0.46236659202918 0.81540316 0.26177287 prediction 0.643101694903705 Functional Loss - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26388324 chr6:26388327 stopgain 0.778 0 24 hm5C_associated_SNPs_51902 0 0 1 0 1 Endoplasmic reticulum 0.500231643398991 0.500231632827521 0.63080632 2.11429411756114e-08 hm5C_site_47254 DeepMRMD:0.63080632;iRNA_m5C:2.11429411756114e-08 47255 chr9 123555837 123555837 1 + G T rs10985040 123555834 + 123555814 123555854 41 GCGTCCCGGGAAGCTGAACGCGTGCCGCGCGGCCCTCACGG GCGTCCCGGGAAGCTGAACGCGTTCCGCGCGGCCCTCACGG < 41bp 0.842967483925091 0.521429234866226 0.8566406 0.7829538 prediction 0.643076498117729 Functional Loss - LOC100288842 ENSG00000214654 ncRNA_exonic Human protein_coding chr9:123555834 chr9:123555837 . . 0 24 hm5C_associated_SNPs_51903 0 0 1 0 0 unknown 0.500247497681827 0.500231656352113 0.1473736 3.16826594266573e-05 hm5C_site_47255 DeepMRMD:0.1473736;iRNA_m5C:3.16826594266573e-05 47256 chr7 101091052 101091052 1 + G T BRCA 101091049 + 101091029 101091069 41 AGATGCTGCCCTGGCTTCACCGGGAGCAACTGTGATGAGGG AGATGCTGCCCTGGCTTCACCGGTAGCAACTGTGATGAGGG < 41bp 0.874281394429328 0.552745465177257 0.90633094 0.23112935 prediction 0.643071858504142 Functional Loss - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101091049 chr7:101091052 synonymous SNV . 0 24 hm5C_associated_SNPs_51904 0 0 0 0 2 exosome 0.500230223782966 0.500231648562855 0.81266188 0 hm5C_site_47256 DeepMRMD:0.81266188;iRNA_m5C:0 47257 chr19 3750690 3750690 1 + A C rs1046278 3750686 + 3750666 3750706 41 CGGCCACTGACCTGTGACCTCTCGAAGGCTGCCAGCTGGTC CGGCCACTGACCTGTGACCTCTCGCAGGCTGCCAGCTGGTC < 41bp 0.882042188018286 0.560514075404845 0.930774 0.2985065 prediction 0.643056225226882 Functional Loss - MIR1268A ENSG00000105289 UTR3 Human protein_coding chr19:3750686 chr19:3750690 . . 0 25 hm5C_associated_SNPs_51905 0 0 0 0 0 unknown 0.500231643464332 0.500231643881763 0.861548 0 hm5C_site_47257 DeepMRMD:0.861548;iRNA_m5C:0 47258 chr22 50988193 50988193 1 + A C rs131779 50988189 + 50988169 50988209 41 CCCTGCCCGCCCCCGCCCCACTGCACTGCACCACCCTGGGC CCCTGCCCGCCCCCGCCCCACTGCCCTGCACCACCCTGGGC < 41bp 0.821527815861583 0.436333603849127 0.14242059 0.16116479 prediction 0.643055631723165 Functional Loss - KLHDC7B ENSG00000130487 CDS Human protein_coding chr22:50988189 chr22:50988193 nonsynonymous SNV 0.025 1 25 hm5C_associated_SNPs_51906 0 0 0 0 0 nucleolus 0.500231631816397 0.500231643921091 0 0 hm5C_site_47258 DeepMRMD:0;iRNA_m5C:0 47259 chr2 27276872 27276872 1 + G T CESC 27276869 + 27276849 27276889 41 CCTTCTCCTACAGTGACTGCCAGGAACTGCTAAACCAGCTA CCTTCTCCTACAGTGACTGCCAGTAACTGCTAAACCAGCTA < 41bp 0.82151840319154 0.46705194483482 0.9148786 0.075953335 prediction 0.64303680638308 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27276869 chr2:27276872 stopgain 1.000 0 24 hm5C_associated_SNPs_51907 0 0 1 0 1 Cytosol 0.500231643403365 0.500231644013604 0.8297572 0 hm5C_site_47259 DeepMRMD:0.8297572;iRNA_m5C:0 47260 chr3 52236729 52236729 1 + G T LUAD 52236726 + 52236706 52236746 41 TTGAGCTTCAGGAGGATGTGCAGGAAATGAATGCCGTGAGG TTGAGCTTCAGGAGGATGTGCAGTAAATGAATGCCGTGAGG < 41bp 0.821498699432589 0.456010601336642 0.70099497 0.40475255 prediction 0.642997398865178 Functional Loss - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52236726 chr3:52236729 stopgain 1.000 1 24 hm5C_associated_SNPs_51908 0 0 1 0 0 Cytosol 0.500231643921516 0.500231643921092 0.40198994 8.4776630160377e-13 hm5C_site_47260 DeepMRMD:0.40198994;iRNA_m5C:8.4776630160377e-13 47261 chrX 153780299 153780299 1 + G T UCEC 153780296 + 153780276 153780316 41 CGGCAGCAGATCAGGACGTACTGGGCGAAGAGTCTCCTCTG CGGCAGCAGATCAGGACGTACTGTGCGAAGAGTCTCCTCTG < 41bp 0.874413524441823 0.552916370723782 0.89898074 0.5217688 prediction 0.642994307436082 Functional Loss - IKBKG ENSG00000073009 CDS Human other chrX:153780296 chrX:153780299 nonsynonymous SNV 0.163 3 24 hm5C_associated_SNPs_51909 0 0 1 0 0 chromatin 0.500231643921092 0.500231643959209 0.75442388 0 hm5C_site_47261 DeepMRMD:0.75442388;iRNA_m5C:0 47262 chr1 152944414 152944414 1 + G T LUAD 152944411 + 152944391 152944431 41 CAGCAGCAGCAGTGCCCACCCCAGAGGGCCCAGCAGCAGCA CAGCAGCAGCAGTGCCCACCCCATAGGGCCCAGCAGCAGCA < 41bp 0.854639254713362 0.533162982607401 0.56815714 0.23637292 prediction 0.642952544211922 Functional Loss - SPRR4 ENSG00000184148 CDS Human protein_coding chr1:152944411 chr1:152944414 nonsynonymous SNV 0.364 2 24 hm5C_associated_SNPs_51910 0 0 0 0 1 exosome 0.500231643921093 0.500231643922026 0.13631428 0 hm5C_site_47262 DeepMRMD:0.13631428;iRNA_m5C:0 47263 chr16 30776790 30776790 1 + G T LUSC 30776788 + 30776768 30776808 41 CTGGGAGCTCCTCAGGCTTCCAGGGGGGCCAGATCACACTC CTGGGAGCTCCTCAGGCTTCCATGGGGGCCAGATCACACTC < 41bp 0.821469677296057 0.498079918727815 0.929813 0.9051091 prediction 0.642939354592114 Functional Loss - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30776788 chr16:30776790 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_51911 0 0 1 0 2 Ribosome 0.50023164242978 0.500231650827496 0.0494078 0 hm5C_site_47263 DeepMRMD:0.0494078;iRNA_m5C:0 47264 chr3 101283843 101283843 1 + G T UCEC 101283840 + 101283820 101283860 41 GTGGAAAACTACCATGAAATCTAGTGTGCAAGAAGAATGTG GTGGAAAACTACCATGAAATCTATTGTGCAAGAAGAATGTG < 41bp 0.821455300736373 0.483220293834486 0.08044955 0.07452986 prediction 0.642910601472746 Functional Loss - TRMT10C ENSG00000174173 CDS Human protein_coding chr3:101283840 chr3:101283843 nonsynonymous SNV 0.958 1 24 hm5C_associated_SNPs_51912 0 0 1 0 0 Ribosome 0.500231643916419 0.500231609536719 0 6.87593997295011e-08 hm5C_site_47264 DeepMRMD:0;iRNA_m5C:6.87593997295011e-08 47265 chr3 56655620 56655620 1 + G T MESO 56655617 + 56655597 56655637 41 TCCTGCCTTTAGCTGAAAATCAAGAAGAGAGTTTTGGTTCT TCCTGCCTTTAGCTGAAAATCAATAAGAGAGTTTTGGTTCT < 41bp 0.834482916631446 0.513031746699953 0.523738 0.1605171 prediction 0.642902339862985 Functional Loss - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56655617 chr3:56655620 stopgain 1.000 0 24 hm5C_associated_SNPs_51913 0 0 1 0 1 chromatin 0.500231643915689 0.500231647273445 0.0474760000000001 0 hm5C_site_47265 DeepMRMD:0.0474760000000001;iRNA_m5C:0 47266 chr12 9721458 9721458 1 + G T rs185487193 9721455 + 9721435 9721475 41 TTTGTCAGTTCGGGTAGCCCCAGGGCTGGGGCTGCCAGAAG TTTGTCAGTTCGGGTAGCCCCAGTGCTGGGGCTGCCAGAAG < 41bp 0.838998579711749 0.517551998167026 0.9084458 0.85956264 prediction 0.642893163089445 Functional Loss - DDX12P;KLRB1 ENSG00000214776 ncRNA_exonic Human protein_coding chr12:9721455 chr12:9721458 . . 0 24 hm5C_associated_SNPs_51914 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.0977663199999999 0 hm5C_site_47266 DeepMRMD:0.0977663199999999;iRNA_m5C:0 47267 chrX 30269226 30269226 1 + G T LUSC 30269223 + 30269203 30269243 41 ATGGGCTTCTGATGCCTCTCCTGGGTGTGATCTTCTTAAAG ATGGGCTTCTGATGCCTCTCCTGTGTGTGATCTTCTTAAAG < 41bp 0.821443987388661 0.442495285902589 0.8813833 0.074107975 prediction 0.642887974777322 Functional Loss - MAGEB1 ENSG00000214107 CDS Human protein_coding chrX:30269223 chrX:30269226 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_51915 0 0 0 0 0 nucleolus 0.500231656104923 0.500231643921054 0.7627666 2.43677378275464e-08 hm5C_site_47267 DeepMRMD:0.7627666;iRNA_m5C:2.43677378275464e-08 47268 chr4 188924883 188924883 1 + G T UCEC 188924880 + 188924860 188924900 41 CAAATACGAACAAGAATGAACAAGAGGGAAAGTAGTCCTCC CAAATACGAACAAGAATGAACAATAGGGAAAGTAGTCCTCC < 41bp 0.821429061117453 0.470572136197367 0.87669104 0.10875696 prediction 0.642858122234907 Functional Loss - ZFP42 ENSG00000179059 CDS Human protein_coding chr4:188924880 chr4:188924883 stopgain 0.003 0 24 hm5C_associated_SNPs_51916 0 0 0 0 0 Nucleus 0.500231636144274 0.500231620180884 0.75338208 3.19267787762811e-08 hm5C_site_47268 DeepMRMD:0.75338208;iRNA_m5C:3.19267787762811e-08 47269 chr8 28384779 28384779 1 + G T SKCM 28384776 + 28384756 28384796 41 ACTATGGTTTTTGGTGTCCCCGAGAGTTAAAAATTGATCCT ACTATGGTTTTTGGTGTCCCCGATAGTTAAAAATTGATCCT < 41bp 0.834698587448988 0.513271450687636 0.88520664 0.08875659 prediction 0.642854273522703 Functional Loss - FZD3 ENSG00000104290 CDS Human protein_coding chr8:28384776 chr8:28384779 stopgain 0.999 1 24 hm5C_associated_SNPs_51917 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921839 0.77041328 0 hm5C_site_47269 DeepMRMD:0.77041328;iRNA_m5C:0 47270 chr20 61939423 61939423 1 + G T LUSC 61939420 + 61939400 61939440 41 GCTGTGCGCCGCCTCCGCTACAAGGGGGGGAACACGTTCAC GCTGTGCGCCGCCTCCGCTACAATGGGGGGAACACGTTCAC < 41bp 0.821419807377672 0.463713921375887 0.89669156 0.24771756 prediction 0.642839614755344 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61939420 chr20:61939423 nonsynonymous SNV 0.216 3 24 hm5C_associated_SNPs_51918 0 0 0 0 1 exosome 0.500231643921105 0.500231643930403 0.79338312 0 hm5C_site_47270 DeepMRMD:0.79338312;iRNA_m5C:0 47271 chr12 32136960 32136960 1 + A C UCEC 32136956 + 32136936 32136976 41 TTCAGGAGGATATTTACCCTCAGGAAATAGATGCATCCAGC TTCAGGAGGATATTTACCCTCAGGCAATAGATGCATCCAGC < 41bp 0.821410792104315 0.479921630663128 0.8891593 0.81578624 prediction 0.64282158420863 Functional Loss - KIAA1551 ENSG00000174718 CDS Human protein_coding chr12:32136956 chr12:32136960 nonsynonymous SNV 0.065 2 25 hm5C_associated_SNPs_51919 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.14674612 0 hm5C_site_47271 DeepMRMD:0.14674612;iRNA_m5C:0 47272 chr14 23847917 23847917 1 + G T UCEC 23847914 + 23847894 23847934 41 AATCAGGAGGACCACATCCGCTAGATCTACTCTCCCACTCA AATCAGGAGGACCACATCCGCTATATCTACTCTCCCACTCA < 41bp 0.870197543140171 0.548796434740898 0.33962056 0.11682102 prediction 0.642802216798546 Functional Loss - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23847914 chr14:23847917 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_51920 0 0 0 0 1 exosome 0.500231643921092 0.500231643921132 0 0 hm5C_site_47272 DeepMRMD:0;iRNA_m5C:0 47273 chr5 140574340 140574340 1 + G T LUSC 140574337 + 140574317 140574357 41 AGGGTCCTTTTCCAGGGCATCTGGTGGACGTGAGGGGCGCT AGGGTCCTTTTCCAGGGCATCTGTTGGACGTGAGGGGCGCT < 41bp 0.821394314630605 0.464687319071064 0.914265 0.8636037 prediction 0.642788629261209 Functional Loss - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140574337 chr5:140574340 nonsynonymous SNV 0.234 0 24 hm5C_associated_SNPs_51921 0 0 0 0 0 exosome 0.500231630361899 0.500231022030432 0.1013226 1.21666293440015e-06 hm5C_site_47273 DeepMRMD:0.1013226;iRNA_m5C:1.21666293440015e-06 47274 chr10 121436479 121436479 1 + G T STAD 121436476 + 121436456 121436496 41 GCCCTGGATTCAGTGGACCCCGAGGGACGAGCCGATGTGCG GCCCTGGATTCAGTGGACCCCGATGGACGAGCCGATGTGCG < 41bp 0.821377924536178 0.464679917094934 0.74551207 0.303006 prediction 0.642755849072357 Functional Loss - BAG3 ENSG00000151929 CDS Human protein_coding chr10:121436476 chr10:121436479 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_51922 0 0 1 0 0 Nucleus 0.5002316437989 0.500231568570526 0.49102414 1.50456748393424e-07 hm5C_site_47274 DeepMRMD:0.49102414;iRNA_m5C:1.50456748393424e-07 47275 chr16 29858552 29858552 1 + A C COAD 29858548 + 29858528 29858568 41 TCCAGAGGGTCCAGAAGGTCCGAGAGCTGGAACTGGTCTAT TCCAGAGGGTCCAGAAGGTCCGAGCGCTGGAACTGGTCTAT < 41bp 0.881503006856482 0.5601389903463 0.8495015 0.38783306 prediction 0.642728033020365 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29858548 chr16:29858552 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_51923 0 0 1 0 1 Nucleus 0.500231643899925 0.500231643921017 0.699003 0 hm5C_site_47275 DeepMRMD:0.699003;iRNA_m5C:0 47276 chr2 131487721 131487721 1 + G T LUAD 131487718 + 131487698 131487738 41 GGCAGCTGTTGGGCATGGTCCGGGGCCACCTCCCATCCAGG GGCAGCTGTTGGGCATGGTCCGGTGCCACCTCCCATCCAGG < 41bp 0.865734780616391 0.544382751479049 0.932878 0.4906076 prediction 0.642704058274683 Functional Loss - GPR148 ENSG00000173302 CDS Human protein_coding chr2:131487718 chr2:131487721 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_51924 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.865756 0 hm5C_site_47276 DeepMRMD:0.865756;iRNA_m5C:0 47277 chr3 52538065 52538065 1 + G T PAAD 52538062 + 52538042 52538082 41 AGCTGTGTGTGCAGGGAAAGCGAGGTGGGGGATGGGCGTGC AGCTGTGTGTGCAGGGAAAGCGATGTGGGGGATGGGCGTGC < 41bp 0.844587482616689 0.523236914066441 0.9115977 0.8452593 prediction 0.642701137100495 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52538062 chr3:52538065 nonsynonymous SNV 0.543 2 24 hm5C_associated_SNPs_51925 0 0 0 0 1 cytosol 0.500231643900759 0.500226513289152 0.1326768 1.02612232133481e-05 hm5C_site_47277 DeepMRMD:0.1326768;iRNA_m5C:1.02612232133481e-05 47278 chr7 141429420 141429420 1 + G T COAD 141429417 + 141429397 141429437 41 CTCTGGGACCCACACAGGATCAAGAAGCACAAAACGCCTGG CTCTGGGACCCACACAGGATCAATAAGCACAAAACGCCTGG < 41bp 0.86649133412796 0.545152520870966 0.19850317 0.044074655 prediction 0.642677626513988 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141429417 chr7:141429420 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_51926 0 0 0 0 2 exosome 0.500231643988573 0.500231643922395 0 1.32355904014503e-10 hm5C_site_47278 DeepMRMD:0;iRNA_m5C:1.32355904014503e-10 47279 chr17 40997112 40997112 1 + G T LUAD 40997109 + 40997089 40997129 41 GGGATGTGACTGTGGAGCGTCACGGCGGGCCCCTGCCCTAT GGGATGTGACTGTGGAGCGTCACTGCGGGCCCCTGCCCTAT < 41bp 0.877636076869018 0.556330226969293 0.43458873 0.08667797 prediction 0.64261169979945 Functional Loss - AOC2 ENSG00000131480 CDS Human protein_coding chr17:40997109 chr17:40997112 nonsynonymous SNV 0.088 3 24 hm5C_associated_SNPs_51927 0 0 1 0 0 exosome 0.500231660345954 0.500231648234303 0 2.42233011427118e-08 hm5C_site_47279 DeepMRMD:0;iRNA_m5C:2.42233011427118e-08 47280 chr21 47537842 47537842 1 + G T STAD 47537839 + 47537819 47537859 41 GTCCAGGGGAGCGAGGAGACCAAGGCGGCAAGGTAAGTGGC GTCCAGGGGAGCGAGGAGACCAATGCGGCAAGGTAAGTGGC < 41bp 0.821292386725028 0.453840614955273 0.89037275 0.41950774 prediction 0.642584773450057 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47537839 chr21:47537842 nonsynonymous SNV 0.108 5 24 hm5C_associated_SNPs_51928 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643921092 0.7807455 0 hm5C_site_47280 DeepMRMD:0.7807455;iRNA_m5C:0 47281 chrX 114856633 114856633 1 + G T UCS 114856630 + 114856610 114856650 41 GGAAGCTAATATGCCATTACCAGGATATAAAGTGAGAGAAA GGAAGCTAATATGCCATTACCAGTATATAAAGTGAGAGAAA < 41bp 0.821286776355684 0.482270786188249 0.74014646 0.061577767 prediction 0.642573552711367 Functional Loss - PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856630 chrX:114856633 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51929 0 0 1 0 3 Nucleus 0.500231643921093 0.500231578879821 0.48029292 1.30082544957943e-07 hm5C_site_47281 DeepMRMD:0.48029292;iRNA_m5C:1.30082544957943e-07 47282 chr15 80988137 80988137 1 + A C UCEC 80988133 + 80988113 80988153 41 GCCCGGGACAACCGGCTCGGCTGCATGTTCGTGCGCTGCGC GCCCGGGACAACCGGCTCGGCTGCCTGTTCGTGCGCTGCGC < 41bp 0.882791982471855 0.561516554678239 0.31146982 0.26055902 prediction 0.642550855587232 Functional Loss - ABHD17C ENSG00000136379 CDS Human protein_coding chr15:80988133 chr15:80988137 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_51930 0 0 1 0 0 exosome 0.500231644056791 0.500233949926158 0 0 hm5C_site_47282 DeepMRMD:0;iRNA_m5C:0 47283 chr5 140574042 140574042 1 + G T rs78546355 140574039 + 140574019 140574059 41 GAGCGCGACGCAGCCAAGCACAGGCTCGTGGTGCTTGTCAA GAGCGCGACGCAGCCAAGCACAGTCTCGTGGTGCTTGTCAA < 41bp 0.821268060543971 0.455395643828831 0.3969273 0.16644254 prediction 0.642536121087942 Functional Loss - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140574039 chr5:140574042 nonsynonymous SNV 0.258 2 24 hm5C_associated_SNPs_51931 0 0 0 0 0 exosome 0.500231657907619 0.500231657053424 0 1.70839076218954e-09 hm5C_site_47283 DeepMRMD:0;iRNA_m5C:1.70839076218954e-09 47284 chr8 110656396 110656396 1 + G T rs7817773 110656393 + 110656373 110656413 41 CCCTCAGGCATCCACTCTACCCGGGGGCCGCCAGCCGCACG CCCTCAGGCATCCACTCTACCCGTGGGCCGCCAGCCGCACG < 41bp 0.863605796708193 0.542372676421638 0.9421849 0.5003553 prediction 0.64246624057311 Functional Loss - LOC100132813 ENSG00000248050 CDS Human antisense chr8:110656393 chr8:110656396 synonymous SNV . 0 24 hm5C_associated_SNPs_51932 0 0 0 0 1 unknown 0.500231643916896 0.500231642672493 0.8836592 2.48880538400442e-09 hm5C_site_47284 DeepMRMD:0.8836592;iRNA_m5C:2.48880538400442e-09 47285 chr12 4714129 4714129 1 + G T LUAD 4714127 + 4714107 4714147 41 ACCGATCCCCAGAAGTGATCCTGGGCCACCCCTACGACGTG ACCGATCCCCAGAAGTGATCCTTGGCCACCCCTACGACGTG < 41bp 0.825379931694635 0.504147453908955 0.8258546 0.061618716 prediction 0.64246495557136 Functional Loss - DYRK4 ENSG00000010219;ENSG00000272921 CDS Human other chr12:4714127 chr12:4714129 synonymous SNV . 0 23 hm5C_associated_SNPs_51933 0 0 1 0 0 Ribosome 0.50023164423643 0.500231643921102 0.6517092 6.30656860067802e-10 hm5C_site_47285 DeepMRMD:0.6517092;iRNA_m5C:6.30656860067802e-10 47286 chr19 50203965 50203965 1 + G T LUSC 50203962 + 50203942 50203982 41 GGTGGACAACACCACGGGCTCCGGGGGGTCCTGGCAGCCGC GGTGGACAACACCACGGGCTCCGTGGGGTCCTGGCAGCCGC < 41bp 0.821226778946241 0.448448274480201 0.92769635 0.34588957 prediction 0.642453557892481 Functional Loss - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50203962 chr19:50203965 synonymous SNV . 0 24 hm5C_associated_SNPs_51934 0 0 0 0 1 exosome 0.500231643921868 0.500231643921227 0.8553927 1.28186350423221e-12 hm5C_site_47286 DeepMRMD:0.8553927;iRNA_m5C:1.28186350423221e-12 47287 chr7 48146550 48146550 1 + G T LUAD 48146547 + 48146527 48146567 41 CAGAGTTTGAGCAGATTGTCCTGGGGAAGCGGGTCATCCGG CAGAGTTTGAGCAGATTGTCCTGTGGAAGCGGGTCATCCGG < 41bp 0.88107112492688 0.559851419192918 0.7884211 0.41195723 prediction 0.642439411467923 Functional Loss - UPP1 ENSG00000183696 CDS Human protein_coding chr7:48146547 chr7:48146550 nonsynonymous SNV 0.929 4 24 hm5C_associated_SNPs_51935 0 0 1 0 1 Ribosome 0.500231636363314 0.500231643927288 0.5768422 0 hm5C_site_47287 DeepMRMD:0.5768422;iRNA_m5C:0 47288 chr1 28208810 28208810 1 + G T SARC 28208808 + 28208788 28208828 41 GGGGCTACCAAGGCAAGCTGCGGCGGCGGCCAAGGGAGTTC GGGGCTACCAAGGCAAGCTGCGTCGGCGGCCAAGGGAGTTC < 41bp 0.82121697831864 0.490194724315395 0.8782226 0.62052333 prediction 0.64243395663728 Functional Loss - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28208808 chr1:28208810 synonymous SNV . 0 23 hm5C_associated_SNPs_51936 0 0 0 0 0 chromatin 0.500231643921094 0.500231643921092 0.51539854 2.88657986402541e-15 hm5C_site_47288 DeepMRMD:0.51539854;iRNA_m5C:2.88657986402541e-15 Lymphocyte counts 47289 chr19 35941483 35941483 1 + G T LUAD 35941481 + 35941461 35941501 41 GGGCATTTGGGAGAGGGCTGCAGGTGCTGCGGAATCAGGGC GGGCATTTGGGAGAGGGCTGCATGTGCTGCGGAATCAGGGC < 41bp 0.821207099848829 0.494791131658553 0.9173557 0.3807006 prediction 0.642414199697657 Functional Loss - FFAR2 ENSG00000126262 CDS Human protein_coding chr19:35941481 chr19:35941483 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_51937 0 0 0 0 0 exosome 0.500231642084194 0.500229045387257 0.8347114 5.19339387428097e-06 hm5C_site_47289 DeepMRMD:0.8347114;iRNA_m5C:5.19339387428097e-06 47290 chr1 201286774 201286774 1 + G T LUSC 201286771 + 201286751 201286791 41 AACCAGAACGTCCAGCAGGCCGCGGCAGGGGCCCTGCGCAA AACCAGAACGTCCAGCAGGCCGCTGCAGGGGCCCTGCGCAA < 41bp 0.821175840929928 0.444819905382887 0.8404468 0.29075137 prediction 0.642351681859856 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201286771 chr1:201286774 synonymous SNV . 0 24 hm5C_associated_SNPs_51938 0 0 0 0 1 exosome 0.500231643921093 0.500231645308013 0.6808936 0 hm5C_site_47290 DeepMRMD:0.6808936;iRNA_m5C:0 47291 chr10 86017690 86017690 1 + G T LUSC 86017687 + 86017667 86017707 41 GCAAGGACGCTGCTGCTCGGCTGGGGCCCCTATGCCATCCT GCAAGGACGCTGCTGCTCGGCTGTGGCCCCTATGCCATCCT < 41bp 0.82117023029016 0.451097461976914 0.7121328 0.08406055 prediction 0.642340460580319 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86017687 chr10:86017690 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_51939 0 0 0 0 2 unknown 0.500231638665795 0.500236985882421 0.4242656 0 hm5C_site_47291 DeepMRMD:0.4242656;iRNA_m5C:0 47292 chr5 113698942 113698942 1 + G T SARC 113698939 + 113698919 113698959 41 GGTCATCGAGACCGAGCTGTCGTGGGGCGCCTACGACAAGG GGTCATCGAGACCGAGCTGTCGTTGGGCGCCTACGACAAGG < 41bp 0.821136201267662 0.460631021988702 0.9273628 0.28373897 prediction 0.642272402535324 Functional Loss - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113698939 chr5:113698942 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_51940 0 0 0 0 1 Cytosol 0.500231643978185 0.500231646617948 0.8547256 0 hm5C_site_47292 DeepMRMD:0.8547256;iRNA_m5C:0 47293 chr12 107254088 107254088 1 + G T HNSC 107254085 + 107254065 107254105 41 CACTGGCTATGGGAATGCTGCAGGACTGTTGGCGGCCAGGG CACTGGCTATGGGAATGCTGCAGTACTGTTGGCGGCCAGGG < 41bp 0.821125499004323 0.471219312280804 0.40824768 0.14732626 prediction 0.642250998008645 Functional Loss - RIC8B ENSG00000111785 CDS Human protein_coding chr12:107254085 chr12:107254088 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51941 0 0 1 0 1 Nucleus 0.500231641488786 0.500231643921092 0 0 hm5C_site_47293 DeepMRMD:0;iRNA_m5C:0 47294 chr5 15500816 15500816 1 + A C SARC 15500812 + 15500792 15500832 41 GCGAACAATGGCAAACAGTACGGCAGTGAGGGTGAGTGGGC GCGAACAATGGCAAACAGTACGGCCGTGAGGGTGAGTGGGC < 41bp 0.821106938230759 0.481971914865227 0.34643137 0.22711504 prediction 0.642213876461519 Functional Loss - FBXL7 ENSG00000183580 CDS Human protein_coding chr5:15500812 chr5:15500816 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_51942 0 0 0 0 0 exosome 0.500231643921267 0.500231644005012 0 0 hm5C_site_47294 DeepMRMD:0;iRNA_m5C:0 47295 chr19 10828933 10828933 1 + G T COAD 10828930 + 10828910 10828950 41 GCCGGCGCCATGGGCAACCGCGGGATGGAAGAGCTGATCCC GCCGGCGCCATGGGCAACCGCGGTATGGAAGAGCTGATCCC < 41bp 0.844322391277629 0.523229112035846 0.9014008 0.84124017 prediction 0.642186558483565 Functional Loss - DNM2 ENSG00000079805 CDS Human protein_coding chr19:10828930 chr19:10828933 synonymous SNV . 0 24 hm5C_associated_SNPs_51943 0 0 1 0 0 Nucleus 0.500232837371576 0.500231660253335 0.12032126 2.35423648198285e-06 hm5C_site_47295 DeepMRMD:0.12032126;iRNA_m5C:2.35423648198285e-06 47296 chr10 7786236 7786236 1 + A C rs147229416 7786232 + 7786212 7786252 41 TGGTCCGACACGGCTCAAGTCACGAATCAGAGGCAAGTATG TGGTCCGACACGGCTCAAGTCACGCATCAGAGGCAAGTATG < 41bp 0.885076196582196 0.563995260915594 0.19408318 0.22498348 prediction 0.642161871333202 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7786232 chr10:7786236 nonsynonymous SNV 0.012 0 25 hm5C_associated_SNPs_51944 0 0 1 0 0 cytosol 0.500240880232333 0.500233382678748 0 1.49951071692911e-05 hm5C_site_47296 DeepMRMD:0;iRNA_m5C:1.49951071692911e-05 47297 chrX 69646998 69646998 1 + G T UCEC 69646995 + 69646975 69647015 41 TCCCTTTCCCAGCTGGCTCCCGAGAACACCCTGATGTCCTT TCCCTTTCCCAGCTGGCTCCCGATAACACCCTGATGTCCTT < 41bp 0.821079659788793 0.450727451784702 0.5774779 0.16207203 prediction 0.642159319577586 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69646995 chrX:69646998 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51945 0 0 0 0 2 exosome 0.500231643920969 0.500231643921092 0.1549558 0 hm5C_site_47297 DeepMRMD:0.1549558;iRNA_m5C:0 47298 chr6 160858143 160858143 1 + G T LUAD 160858140 + 160858120 160858160 41 GTGGAACTGCCAGGAGCTCTCTTGATCTTACTAACCATTGA GTGGAACTGCCAGGAGCTCTCTTTATCTTACTAACCATTGA < 41bp 0.821057745127048 0.460595574842036 0.30715966 0.18425012 prediction 0.642115490254096 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160858140 chr6:160858143 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_51946 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643924789 0 0 hm5C_site_47298 DeepMRMD:0;iRNA_m5C:0 47299 chr19 44661343 44661343 1 + G T LUAD 44661340 + 44661320 44661360 41 GTTCAAGTTTTCAGGCCCATCAGGGAGTCCACACTGGAGAG GTTCAAGTTTTCAGGCCCATCAGTGAGTCCACACTGGAGAG < 41bp 0.873620166261783 0.552613401442734 0.8651518 0.12630689 prediction 0.642013529638098 Functional Loss - ZNF234 ENSG00000263002 CDS Human protein_coding chr19:44661340 chr19:44661343 stopgain 0.975 0 24 hm5C_associated_SNPs_51947 0 0 1 0 0 exosome 0.500231643921092 0.500231643914728 0.7303036 1.27278187989077e-11 hm5C_site_47299 DeepMRMD:0.7303036;iRNA_m5C:1.27278187989077e-11 47300 chr16 28995594 28995594 1 + G T LUAD 28995591 + 28995571 28995611 41 CCCAGCGGGGCCGCTCCACCCGCGTGCCCGTGGCCAGTGTG CCCAGCGGGGCCGCTCCACCCGCTTGCCCGTGGCCAGTGTG < 41bp 0.857458864041317 0.536465901644923 0.6156678 0.07652497 prediction 0.641985924792789 Functional Loss - SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28995591 chr16:28995594 nonsynonymous SNV 0.602 3 24 hm5C_associated_SNPs_51948 0 0 1 0 0 chromatin 0.500231643499822 0.500231643921093 0.2313356 0 hm5C_site_47300 DeepMRMD:0.2313356;iRNA_m5C:0 47301 chr16 23379269 23379269 1 + G T GBM 23379266 + 23379246 23379286 41 GGCACTTCCTTCGGCCAACCCTGGAACTGAATTCGGTGAGT GGCACTTCCTTCGGCCAACCCTGTAACTGAATTCGGTGAGT < 41bp 0.820980080627019 0.451106233352017 0.8319673 0.334194 prediction 0.641960161254039 Functional Loss - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23379266 chr16:23379269 nonsynonymous SNV 0.923 4 24 hm5C_associated_SNPs_51949 0 0 0 0 2 exosome 0.500231643919083 0.500231643921063 0.6639346 0 hm5C_site_47301 DeepMRMD:0.6639346;iRNA_m5C:0 47302 chr1 150900250 150900250 1 + A C GBM 150900246 + 150900226 150900266 41 AGCAACAGCTACAGTGGAGTCTGAAGAGATTGCAGAGCTGC AGCAACAGCTACAGTGGAGTCTGACGAGATTGCAGAGCTGC < 41bp 0.820975564468228 0.429940946125654 0.10780266 0.13333124 prediction 0.641951128936456 Functional Loss - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150900246 chr1:150900250 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_51950 0 0 1 0 1 Nucleus 0.500231164649504 0.500231688639804 0 0 hm5C_site_47302 DeepMRMD:0;iRNA_m5C:0 47303 chr10 88988122 88988122 1 + G T COAD 88988120 + 88988100 88988140 41 CCCGCTCCCGGCCCAGCACACGGGCCGCTCCTTGTGACTGC CCCGCTCCCGGCCCAGCACACGTGCCGCTCCTTGTGACTGC < 41bp 0.820974019726253 0.495693667603643 0.908062 0.57262444 prediction 0.641948039452506 Functional Loss - NUTM2A ENSG00000184923 CDS Human protein_coding chr10:88988120 chr10:88988122 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_51951 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0.67087512 1.99840144432528e-15 hm5C_site_47303 DeepMRMD:0.67087512;iRNA_m5C:1.99840144432528e-15 47304 chr3 111849344 111849344 1 + G T GBM 111849341 + 111849321 111849361 41 TCTCACATTCCAAGGCATCTCTTGAGTGTTCTGCTGCCGCC TCTCACATTCCAAGGCATCTCTTTAGTGTTCTGCTGCCGCC < 41bp 0.820950125909453 0.473426651900049 0.24948719 0.24809948 prediction 0.641900251818906 Functional Loss - GCSAM ENSG00000174500 CDS Human protein_coding chr3:111849341 chr3:111849344 nonsynonymous SNV 0.076 1 24 hm5C_associated_SNPs_51952 0 0 0 0 0 exosome 0.500231643066205 0.500231643921096 0 0 hm5C_site_47304 DeepMRMD:0;iRNA_m5C:0 47305 chr8 145245734 145245734 1 + G T ACC 145245731 + 145245711 145245751 41 CCCTGGAGTACCTAGCCAACCTGGACCGAGCCCCAGACCCC CCCTGGAGTACCTAGCCAACCTGTACCGAGCCCCAGACCCC < 41bp 0.863476335092637 0.542533520973787 0.43520692 0.15261257 prediction 0.6418856282377 Functional Loss - MROH1 ENSG00000179832 CDS Human protein_coding chr8:145245731 chr8:145245734 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51953 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_47305 DeepMRMD:0;iRNA_m5C:0 47306 chr2 62449841 62449841 1 + G T LUSC 62449838 + 62449818 62449858 41 TTTGCCAGAAGGCAAGCAATCCGGGAATCCTGGGGCCAAGA TTTGCCAGAAGGCAAGCAATCCGTGAATCCTGGGGCCAAGA < 41bp 0.820939251704192 0.461119975044426 0.92381114 0.40230292 prediction 0.641878503408384 Functional Loss - B3GNT2 ENSG00000170340 CDS Human protein_coding chr2:62449838 chr2:62449841 synonymous SNV . 0 24 hm5C_associated_SNPs_51954 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643920978 0.84762228 2.28483898467857e-13 hm5C_site_47306 DeepMRMD:0.84762228;iRNA_m5C:2.28483898467857e-13 47307 chr7 100552935 100552935 1 + G T LUAD 100552932 + 100552912 100552952 41 GGGACAGTGTGCTTGCCTTCCGGGGTTTTCTGGGGACCGCT GGGACAGTGTGCTTGCCTTCCGGTGTTTTCTGGGGACCGCT < 41bp 0.820928702806453 0.457339620529239 0.90483755 0.47952577 prediction 0.641857405612906 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100552932 chr7:100552935 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_51955 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.8096751 0 hm5C_site_47307 DeepMRMD:0.8096751;iRNA_m5C:0 47308 chr7 20762799 20762799 1 + G T LUAD 20762796 + 20762776 20762816 41 GATTGAAACCGCAGCAATGACTGGATTTGCCAACAAAGATA GATTGAAACCGCAGCAATGACTGTATTTGCCAACAAAGATA < 41bp 0.82111564232906 0.500198888427066 0.3788942 0.11651972 prediction 0.641833507803987 Functional Loss - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20762796 chr7:20762799 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_51956 0 0 0 0 1 exosome 0.500231643921092 0.500231643918373 0 5.43853850842879e-12 hm5C_site_47308 DeepMRMD:0;iRNA_m5C:5.43853850842879e-12 47309 chr20 62848497 62848497 1 + G T SARC 62848495 + 62848475 62848515 41 AACGTGGCCCCCGCCACACCCAGGGCCAACTTGGCCAAGGA AACGTGGCCCCCGCCACACCCATGGCCAACTTGGCCAAGGA < 41bp 0.820902651762814 0.486718711693405 0.95984685 0.5061808 prediction 0.641805303525629 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62848495 chr20:62848497 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_51957 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.9073321 0 hm5C_site_47309 DeepMRMD:0.9073321;iRNA_m5C:0 47310 chr11 94731714 94731714 1 + G T LUAD 94731712 + 94731692 94731732 41 CCTTGGCCTATGGCTGCCCGCAGTGGGACACGGTGCCACAC CCTTGGCCTATGGCTGCCCGCATTGGGACACGGTGCCACAC < 41bp 0.823347115211027 0.502476265069579 0.2997654 0.052010387 prediction 0.641741700282895 Functional Loss - KDM4D ENSG00000186280 CDS Human protein_coding chr11:94731712 chr11:94731714 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_51958 0 0 0 0 0 chromatin 0.500231643921092 0.50023164392092 0 3.44835271448574e-13 hm5C_site_47310 DeepMRMD:0;iRNA_m5C:3.44835271448574e-13 47311 chr16 30999192 30999192 1 + G T LUAD 30999189 + 30999169 30999209 41 TGCTACGATGGATCACCCTACAGGAGCTACGAGGATTTCAA TGCTACGATGGATCACCCTACAGTAGCTACGAGGATTTCAA < 41bp 0.865168459586118 0.544316897030092 0.24246201 0.050364763 prediction 0.641703125112052 Functional Loss - HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30999189 chr16:30999192 nonsynonymous SNV 0.949 1 24 hm5C_associated_SNPs_51959 0 0 1 1 0 Ribosome 0.500231644107194 0.500231711184411 0 0 hm5C_site_47311 DeepMRMD:0;iRNA_m5C:0 47312 chr7 102584971 102584971 1 + G T OV 102584968 + 102584948 102584988 41 CATATCCTGAGTCATTTGACCAAGACACAGAAGATGATGAA CATATCCTGAGTCATTTGACCAATACACAGAAGATGATGAA < 41bp 0.820841470312692 0.487451156766989 0.19558981 0.038221 prediction 0.641682940625383 Functional Loss - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584968 chr7:102584971 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_51960 0 0 1 5 0 Cytosol 0.50011262631019 0.500231850551656 0 0 hm5C_site_47312 DeepMRMD:0;iRNA_m5C:0 47313 chr7 152551558 152551558 1 + G T LUAD 152551555 + 152551535 152551575 41 TCTCGTAGCCCGAGTTCTTTCAGGTCTGCCACACCAAGAAG TCTCGTAGCCCGAGTTCTTTCAGTTCTGCCACACCAAGAAG < 41bp 0.86701632226934 0.546176015851136 0.8624518 0.42306045 prediction 0.641680612836409 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152551555 chr7:152551558 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_51961 0 0 0 0 1 Ribosome 0.500231643980328 0.500231643921058 0.7249036 1.18539844606858e-10 hm5C_site_47313 DeepMRMD:0.7249036;iRNA_m5C:1.18539844606858e-10 47314 chr10 103912283 103912283 1 + G T COAD 103912280 + 103912260 103912300 41 CAATAAGTTCGCCAAAGCGACAGGAGCTGTGAGTTCCGGGC CAATAAGTTCGCCAAAGCGACAGTAGCTGTGAGTTCCGGGC < 41bp 0.820836209419811 0.472510474429037 0.8378215 0.46761814 prediction 0.641672418839621 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103912280 chr10:103912283 nonsynonymous SNV 0.966 3 24 hm5C_associated_SNPs_51962 0 0 1 0 1 Nucleus 0.500231690012822 0.500231641074146 0.675643 9.7877352223108e-08 hm5C_site_47314 DeepMRMD:0.675643;iRNA_m5C:9.7877352223108e-08 47315 chr17 72470012 72470012 1 + G T LUAD 72470009 + 72469989 72470029 41 GAGGTTGAGGTGTCCGTGTTCCCGGGTGAGCCCCTCCTTCC GAGGTTGAGGTGTCCGTGTTCCCTGGTGAGCCCCTCCTTCC < 41bp 0.820833408528653 0.461423570392955 0.93927693 0.46764082 prediction 0.641666817057306 Functional Loss - CD300A ENSG00000167851 CDS Human protein_coding chr17:72470009 chr17:72470012 synonymous SNV . 0 24 hm5C_associated_SNPs_51963 0 0 0 0 1 Endoplasmic reticulum 0.500231643921101 0.500231643921092 0.87855386 1.70974345792274e-14 hm5C_site_47315 DeepMRMD:0.87855386;iRNA_m5C:1.70974345792274e-14 47316 chr11 4929178 4929178 1 + G T UCEC 4929175 + 4929155 4929195 41 AAGCTGGCCTGCTCTGACAACAAGACCAATGTCATCTATGG AAGCTGGCCTGCTCTGACAACAATACCAATGTCATCTATGG < 41bp 0.820818334513787 0.469711784917454 0.13969246 0.13777092 prediction 0.641636669027573 Functional Loss - OR51A7 ENSG00000176895 CDS Human protein_coding chr11:4929175 chr11:4929178 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_51964 0 0 0 0 0 exosome 0.500231611922879 0.50023164391146 0 0 hm5C_site_47316 DeepMRMD:0;iRNA_m5C:0 47317 chr1 200008890 200008890 1 + G T LUAD 200008887 + 200008867 200008907 41 CCCTGGGACTGGCTCGATCGCATGGGGAACAGGGCCAGATG CCCTGGGACTGGCTCGATCGCATTGGGAACAGGGCCAGATG < 41bp 0.820810329498637 0.454382308523375 0.8874106 0.5306394 prediction 0.641620658997275 Functional Loss - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200008887 chr1:200008890 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_51965 0 0 0 0 0 cytosol 0.500231643921092 0.50023164392009 0.7135424 2.00417460405333e-12 hm5C_site_47317 DeepMRMD:0.7135424;iRNA_m5C:2.00417460405333e-12 47318 chr12 85695135 85695135 1 + G T LUAD 85695132 + 85695112 85695152 41 TTTCACTGACTCTCTTCTTACTGGGGCAACCAATGGACATG TTTCACTGACTCTCTTCTTACTGTGGCAACCAATGGACATG < 41bp 0.8564808270354 0.535692131094869 0.86445403 0.12667492 prediction 0.641577391881062 Functional Loss - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85695132 chr12:85695135 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_51966 0 0 1 0 0 nucleus 0.500231643921077 0.500231681467428 0.72890806 0 hm5C_site_47318 DeepMRMD:0.72890806;iRNA_m5C:0 47319 chr2 198950287 198950287 1 + G T rs144487956 198950284 + 198950264 198950304 41 GGTCCAATGATGGACCTTCACACGGGCTGGTTTCTTCAAAA GGTCCAATGATGGACCTTCACACTGGCTGGTTTCTTCAAAA < 41bp 0.820782679288227 0.472903867812264 0.36917078 0.06922245 prediction 0.641565358576454 Functional Loss - PLCL1 ENSG00000115896 CDS Human protein_coding chr2:198950284 chr2:198950287 synonymous SNV . 0 24 hm5C_associated_SNPs_51967 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_47319 DeepMRMD:0;iRNA_m5C:0 47320 chr15 97326974 97326974 1 + G T UCEC 97326971 + 97326951 97326991 41 TTTTCAGAGGCTGCCTTGTCCTAGGTATCTGATGTCCTGCC TTTTCAGAGGCTGCCTTGTCCTATGTATCTGATGTCCTGCC < 41bp 0.850330768342752 0.529572129188757 0.51996446 0.23951387 prediction 0.641517278307989 Functional Loss - SPATA8;SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97326971 chr15:97326974 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_51968 0 0 0 0 1 unknown 0.500231643921092 0.500231643920643 0.0399289199999999 8.98836560736527e-13 hm5C_site_47320 DeepMRMD:0.0399289199999999;iRNA_m5C:8.98836560736527e-13 47321 chr15 80464586 80464586 1 + G T UCEC 80464583 + 80464563 80464603 41 GGAATGGTCCTTATGAACGACTGGAGTGGTAATTACTGGAG GGAATGGTCCTTATGAACGACTGTAGTGGTAATTACTGGAG < 41bp 0.820741799926312 0.466992335396221 0.5728517 0.30864033 prediction 0.641483599852624 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80464583 chr15:80464586 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_51969 0 0 0 0 2 Cytosol 0.50023164392112 0.500231643921092 0.1457034 5.50670620214078e-14 hm5C_site_47321 DeepMRMD:0.1457034;iRNA_m5C:5.50670620214078e-14 47322 chr16 20926899 20926899 1 + G T UCEC 20926896 + 20926876 20926916 41 AGATGACAACGGCAACACGACAAGAAGTCCTTGGCCTCTAC AGATGACAACGGCAACACGACAATAAGTCCTTGGCCTCTAC < 41bp 0.820717267786316 0.467924957759776 0.27277678 0.05055961 prediction 0.641434535572633 Functional Loss - LYRM1 ENSG00000102897 CDS Human protein_coding chr16:20926896 chr16:20926899 stopgain 1.000 1 24 hm5C_associated_SNPs_51970 0 0 1 0 1 Ribosome 0.500231642993377 0.500231643757606 0 0 hm5C_site_47322 DeepMRMD:0;iRNA_m5C:0 47323 chr11 609148 609148 1 + A C rs7116027 609144 + 609124 609164 41 TGGGGGAAGCACATGTCTCGCCGGAGGTGGCTACGGCCGAC TGGGGGAAGCACATGTCTCGCCGGCGGTGGCTACGGCCGAC < 41bp 0.848684683826291 0.52799550280827 0.9003791 0.8794386 prediction 0.641378362036042 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:609144 chr11:609148 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_51971 0 0 1 0 0 Nucleus 0.500231643871949 0.500231272295879 0.0418810000000001 7.43152139159875e-07 hm5C_site_47323 DeepMRMD:0.0418810000000001;iRNA_m5C:7.43152139159875e-07 47324 chr2 101186144 101186144 1 + G T SARC 101186141 + 101186121 101186161 41 TGTTCAAGAAGTTACCAAAGCTGGCGAGGGCTTGTGGGTCA TGTTCAAGAAGTTACCAAAGCTGTCGAGGGCTTGTGGGTCA < 41bp 0.820635639592098 0.463934961668317 0.13549656 0.03159684 prediction 0.641271279184196 Functional Loss - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101186141 chr2:101186144 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_51972 0 0 0 0 0 exosome 0.500231643476298 0.500231643935676 0 0 hm5C_site_47324 DeepMRMD:0;iRNA_m5C:0 47325 chr2 95537712 95537712 1 + C A PAAD 95537714 - 95537694 95537734 41 AAGGGCACCTCTGTGGCGTCCAGGGCGCGCTCCAGCCGTTG AAGGGCACCTCTGTGGCGTCCATGGCGCGCTCCAGCCGTTG < 41bp 0.820621190758972 0.491595312999253 0.8128081 0.19652519 prediction 0.641242381517944 Functional Loss - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95537714 chr2:95537712 nonsynonymous SNV 0.180 4 23 hm5C_associated_SNPs_51973 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921038 0.6256162 1.09690034832965e-13 hm5C_site_47325 DeepMRMD:0.6256162;iRNA_m5C:1.09690034832965e-13 47326 chr1 205550012 205550012 1 + G T LUAD 205550009 + 205549989 205550029 41 TCCAAAGGACGGGGCAGGGACCCGAGTGTCCTATGCCTTCT TCCAAAGGACGGGGCAGGGACCCTAGTGTCCTATGCCTTCT < 41bp 0.867704584239249 0.547091869426794 0.8991091 0.32732126 prediction 0.641225429624909 Functional Loss - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205550009 chr1:205550012 nonsynonymous SNV 0.401 0 24 hm5C_associated_SNPs_51974 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643938486 0.7982182 0 hm5C_site_47326 DeepMRMD:0.7982182;iRNA_m5C:0 47327 chr1 171753568 171753568 1 + G T LUAD 171753565 + 171753545 171753585 41 CGATGGGGACACGGGGGAGCCACGCTACACCCTCCACGTGG CGATGGGGACACGGGGGAGCCACTCTACACCCTCCACGTGG < 41bp 0.820606961158489 0.455712786967713 0.29982752 0.37714183 prediction 0.641213922316979 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171753565 chr1:171753568 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51975 0 0 1 0 1 Ribosome 0.500231643210298 0.500231643875676 0 0 hm5C_site_47327 DeepMRMD:0;iRNA_m5C:0 47328 chr7 100732372 100732372 1 + G T OV 100732369 + 100732349 100732389 41 AGCCTCTCCCAGGCCAGCCACGCGGTGGCGGCACTGCCTAG AGCCTCTCCCAGGCCAGCCACGCTGTGGCGGCACTGCCTAG < 41bp 0.868898986313119 0.54829653600032 0.77944446 0.24822211 prediction 0.641204900625598 Functional Loss - TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100732369 chr7:100732372 synonymous SNV . 0 24 hm5C_associated_SNPs_51976 0 0 0 0 0 nucleus 0.500231643921108 0.5002317438899 0.55888892 0 hm5C_site_47328 DeepMRMD:0.55888892;iRNA_m5C:0 47329 chr11 2939285 2939285 1 + G T LUSC 2939282 + 2939262 2939302 41 CTGCTGCGGCTGCCAGACGTCCCGAGGATCTTCCTGGTGAA CTGCTGCGGCTGCCAGACGTCCCTAGGATCTTCCTGGTGAA < 41bp 0.820599276736476 0.462405696165554 0.23111999 0.14307165 prediction 0.641198553472953 Functional Loss - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2939282 chr11:2939285 synonymous SNV . 0 24 hm5C_associated_SNPs_51977 0 0 1 0 2 Ribosome 0.500231643921105 0.500231643921092 0 2.59792187762287e-14 hm5C_site_47329 DeepMRMD:0;iRNA_m5C:2.59792187762287e-14 47330 chr12 54925595 54925595 1 + G T GBM 54925592 + 54925572 54925612 41 TCAGTTTCAGGGCCATGGCCCAAGAGGGACTTCGGGAGGTG TCAGTTTCAGGGCCATGGCCCAATAGGGACTTCGGGAGGTG < 41bp 0.820585298643591 0.451755690927738 0.43062854 0.15168256 prediction 0.641170597287181 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54925592 chr12:54925595 stopgain 0.999 1 24 hm5C_associated_SNPs_51978 0 0 1 0 2 Cytosol 0.500231645430664 0.500231643921092 0 3.01914382383472e-09 hm5C_site_47330 DeepMRMD:0;iRNA_m5C:3.01914382383472e-09 47331 chr19 18054116 18054116 1 + G T SARC 18054113 + 18054093 18054133 41 GAGGTGCCGCTGGAGGAGAACGTGAACCGCCGCGTGCTGGA GAGGTGCCGCTGGAGGAGAACGTTAACCGCCGCGTGCTGGA < 41bp 0.861079489661075 0.540506813931731 0.7065504 0.4813762 prediction 0.64114535145869 Functional Loss - CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18054113 chr19:18054116 synonymous SNV . 0 24 hm5C_associated_SNPs_51979 0 0 1 0 2 Ribosome 0.500230330631963 0.5002316196136 0.4131008 0 hm5C_site_47331 DeepMRMD:0.4131008;iRNA_m5C:0 47332 chr19 57035865 57035865 1 + G T BLCA 57035862 + 57035842 57035882 41 GGAAGTCATGAGATGTTTAGCAAGAAAGAAATAATCACTCA GGAAGTCATGAGATGTTTAGCAATAAAGAAATAATCACTCA < 41bp 0.84511973585817 0.524598271379081 0.8396665 0.3990096 prediction 0.641042928958178 Functional Loss - ZNF471 ENSG00000196263 CDS Human protein_coding chr19:57035862 chr19:57035865 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_51980 0 0 0 0 0 exosome 0.500231639380856 0.50023164415608 0.679333 0 hm5C_site_47332 DeepMRMD:0.679333;iRNA_m5C:0 47333 chrX 65417580 65417580 1 + G T LUAD 65417577 + 65417557 65417597 41 TTTGAGAAAGTAACATACCGCTGGACAGTCCCCCCTCATGC TTTGAGAAAGTAACATACCGCTGTACAGTCCCCCCTCATGC < 41bp 0.820508267917327 0.454017020115779 0.27231765 0.1206651 prediction 0.641016535834653 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65417577 chrX:65417580 nonsynonymous SNV 0.913 5 24 hm5C_associated_SNPs_51981 0 0 1 0 1 Nucleus 0.500231643921384 0.500231643921092 0 5.83977310952832e-13 hm5C_site_47333 DeepMRMD:0;iRNA_m5C:5.83977310952832e-13 47334 chr3 49050296 49050296 1 + G T ESCA 49050293 + 49050273 49050313 41 GGGAAGGTGCACAGCTTGAGCTGGGCCCTGCGTGGTTATGA GGGAAGGTGCACAGCTTGAGCTGTGCCCTGCGTGGTTATGA < 41bp 0.820500449619281 0.443332734847473 0.5860619 0.060664654 prediction 0.641000899238562 Functional Loss - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49050293 chr3:49050296 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_51982 0 0 1 0 1 Nucleus 0.500231643924343 0.500231644916413 0.1721238 0 hm5C_site_47334 DeepMRMD:0.1721238;iRNA_m5C:0 Schizophrenia 47335 chr20 30414714 30414714 1 + G T UCEC 30414711 + 30414691 30414731 41 GACGGGATCCTCTTCATGCACAAGATGAGGGTTTTGCACCT GACGGGATCCTCTTCATGCACAATATGAGGGTTTTGCACCT < 41bp 0.873783175087237 0.553282980696046 0.567737 0.09764695 prediction 0.641000388782381 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30414711 chr20:30414714 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_51983 0 0 0 0 1 exosome 0.500231643921092 0.500231643921093 0.135474 0 hm5C_site_47335 DeepMRMD:0.135474;iRNA_m5C:0 47336 chr3 196159250 196159250 1 + G T UCEC 196159247 + 196159227 196159267 41 CCCTTCAGCGCCGAGGACGCCGCGGAGCCCCCGTGGGCAGC CCCTTCAGCGCCGAGGACGCCGCTGAGCCCCCGTGGGCAGC < 41bp 0.820495901828465 0.474674821697394 0.811229 0.12062132 prediction 0.640991803656931 Functional Loss - UBXN7 ENSG00000163960 CDS Human protein_coding chr3:196159247 chr3:196159250 synonymous SNV . 0 24 hm5C_associated_SNPs_51984 0 0 0 0 0 chromatin 0.500231643921092 0.500231665410505 0.622458 0 hm5C_site_47336 DeepMRMD:0.622458;iRNA_m5C:0 47337 chr11 5969290 5969290 1 + G T LUSC 5969287 + 5969267 5969307 41 AGACTCAAGGCAGAGGGTGCCGTGGCAAAGGCCCTAAGCAC AGACTCAAGGCAGAGGGTGCCGTTGCAAAGGCCCTAAGCAC < 41bp 0.820467081009127 0.459304814076329 0.4826097 0.20993546 prediction 0.640934162018254 Functional Loss - OR56A3 ENSG00000184478 CDS Human protein_coding chr11:5969287 chr11:5969290 synonymous SNV . 0 24 hm5C_associated_SNPs_51985 0 0 0 0 0 unknown 0.500231643882977 0.500228398043638 0 6.49167867750045e-06 hm5C_site_47337 DeepMRMD:0;iRNA_m5C:6.49167867750045e-06 47338 chr19 15760957 15760957 1 + G T UCEC 15760954 + 15760934 15760974 41 CTCCAAGCCAAGGCCAAATCCAAGACTTTGGACTTCATTGA CTCCAAGCCAAGGCCAAATCCAATACTTTGGACTTCATTGA < 41bp 0.874650676692323 0.554193726367678 0.12893885 0.03319186 prediction 0.640913900649291 Functional Loss - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15760954 chr19:15760957 nonsynonymous SNV 0.896 1 24 hm5C_associated_SNPs_51986 0 0 0 0 1 exosome 0.500231643918143 0.500231643921262 0 0 hm5C_site_47338 DeepMRMD:0;iRNA_m5C:0 47339 chr20 13260474 13260474 1 + A C rs538119716 13260470 + 13260450 13260490 41 CCTCAGACGACAGCAACTTCCTCAACCCCCCCAGGGGGTGG CCTCAGACGACAGCAACTTCCTCACCCCCCCCAGGGGGTGG < 41bp 0.820450832302292 0.407221265109633 0.21832845 0.023358792 prediction 0.640901664604583 Functional Loss - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13260470 chr20:13260474 nonsynonymous SNV 0.912 1 25 hm5C_associated_SNPs_51987 0 0 0 0 1 exosome 0.500231643921092 0.500231645908756 0 0 hm5C_site_47339 DeepMRMD:0;iRNA_m5C:0 47340 chr17 7186840 7186840 1 + G T LUSC 7186838 + 7186818 7186858 41 GTGGCTGGGGAGGCAGGGGCCTGAGGGACCCAGCTCCATCC GTGGCTGGGGAGGCAGGGGCCTTAGGGACCCAGCTCCATCC < 41bp 0.832235551185948 0.511797730661228 0.7556285 0.5032043 prediction 0.640875641049441 Functional Loss - SLC2A4 ENSG00000181856 CDS Human protein_coding chr17:7186838 chr17:7186840 stopgain 0.915 0 23 hm5C_associated_SNPs_51988 0 0 0 0 1 Nucleus 0.500231645757944 0.500231643921092 0.5048484 3.67370223131047e-09 hm5C_site_47340 DeepMRMD:0.5048484;iRNA_m5C:3.67370223131047e-09 47341 chr4 177032769 177032769 1 + G T LUSC 177032766 + 177032746 177032786 41 GCAAGTGGGATTGCTGGCTGCTGGATGTCAGCCATGGAACA GCAAGTGGGATTGCTGGCTGCTGTATGTCAGCCATGGAACA < 41bp 0.820434250774559 0.482304134267757 0.5345041 0.42095834 prediction 0.640868501549118 Functional Loss - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177032766 chr4:177032769 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51989 0 0 1 0 2 exosome 0.500231494731387 0.50023164426274 0.0690082000000001 0 hm5C_site_47341 DeepMRMD:0.0690082000000001;iRNA_m5C:0 47342 chr17 7577142 7577142 1 + C A COAD 7577145 - 7577125 7577165 41 TCCTGAGTAGTGGTAATCTACTGGGACGGAACAGCTTTGAG TCCTGAGTAGTGGTAATCTACTGTGACGGAACAGCTTTGAG < 41bp 0.822440274171148 0.502012283431094 0.15240294 0.054140836 prediction 0.640855981480109 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577145 chr17:7577142 stopgain 0.953 1 24 hm5C_associated_SNPs_51990 0 0 1 0 1 Ribosome 0.50023164394371 0.50023166339406 0 0 hm5C_site_47342 DeepMRMD:0;iRNA_m5C:0 47343 chr1 101705375 101705375 1 + G T LUAD 101705372 + 101705352 101705392 41 CGCTCTTCATCCTGCTCCTGCTGGATGTGGGCTGCAAGGTG CGCTCTTCATCCTGCTCCTGCTGTATGTGGGCTGCAAGGTG < 41bp 0.874073835118736 0.553647857732324 0.31431824 0.11768773 prediction 0.640851954772823 Functional Loss - S1PR1 ENSG00000170989 CDS Human protein_coding chr1:101705372 chr1:101705375 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_51991 0 0 0 0 0 Endoplasmic reticulum 0.500231643909307 0.500231643921092 0 0 hm5C_site_47343 DeepMRMD:0;iRNA_m5C:0 47344 chr5 140615950 140615950 1 + G T LUSC 140615947 + 140615927 140615967 41 TGGCTGTCGTACCAGCTGCTCAAGGCCACGGAGCCCGGGCT TGGCTGTCGTACCAGCTGCTCAATGCCACGGAGCCCGGGCT < 41bp 0.820417297602403 0.476346012407247 0.904621 0.8542534 prediction 0.640834595204805 Functional Loss - PCDHB18P ENSG00000146001 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:140615947 chr5:140615950 . . 0 24 hm5C_associated_SNPs_51992 0 0 0 0 0 unknown 0.500231345706825 0.500231643921023 0.1007352 0 hm5C_site_47344 DeepMRMD:0.1007352;iRNA_m5C:0 47345 chr3 137483701 137483701 1 + G T STAD 137483698 + 137483678 137483718 41 TGGTCCCGGGGCCAGCGGCGCAAGATGGCCCAGGAAAACCC TGGTCCCGGGGCCAGCGGCGCAATATGGCCCAGGAAAACCC < 41bp 0.867401447285028 0.546991595691153 0.86637604 0.34252608 prediction 0.640819703187748 Functional Loss - SOX14 ENSG00000168875 CDS Human protein_coding chr3:137483698 chr3:137483701 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_51993 0 0 0 0 0 exosome 0.500231643949186 0.500231643921092 0.73275208 5.61861668302299e-11 hm5C_site_47345 DeepMRMD:0.73275208;iRNA_m5C:5.61861668302299e-11 47346 chr6 3115058 3115058 1 + A C rs114155161 3115054 + 3115034 3115074 41 GATGCCAGGGGCACTGTTCTCCCCAGCCCCCCGCCCCAGTT GATGCCAGGGGCACTGTTCTCCCCCGCCCCCCGCCCCAGTT < 41bp 0.820405578922956 0.499587968569748 0.17223334 0.13151819 prediction 0.640811157845913 Functional Loss - RIPK1 ENSG00000137275 UTR3 Human protein_coding chr6:3115054 chr6:3115058 . . 0 25 hm5C_associated_SNPs_51994 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47346 DeepMRMD:0;iRNA_m5C:0 47347 chrX 88008747 88008747 1 + G T COAD 88008744 + 88008724 88008764 41 CAAGCCCTTAAATGATAGATCAAGATCCCACTCAGGGAAAG CAAGCCCTTAAATGATAGATCAATATCCCACTCAGGGAAAG < 41bp 0.820405528762055 0.464877264132504 0.14265329 0.03312689 prediction 0.64081105752411 Functional Loss - CPXCR1 ENSG00000147183 CDS Human protein_coding chrX:88008744 chrX:88008747 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_51995 0 0 0 0 0 unknown 0.500231643819834 0.500231582933134 0 1.21773399808234e-07 hm5C_site_47347 DeepMRMD:0;iRNA_m5C:1.21773399808234e-07 47348 chr5 140482117 140482117 1 + G T LUAD 140482114 + 140482094 140482134 41 AATGGCGAAGTGCGCACCGCCAGGCTGCTGAGCGAGCGCGA AATGGCGAAGTGCGCACCGCCAGTCTGCTGAGCGAGCGCGA < 41bp 0.870029387740826 0.549635204990497 0.8796773 0.33880246 prediction 0.640788365500658 Functional Loss - PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140482114 chr5:140482117 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_51996 0 0 0 0 0 exosome 0.500231690980353 0.50023164709321 0.7593546 8.77742871718823e-08 hm5C_site_47348 DeepMRMD:0.7593546;iRNA_m5C:8.77742871718823e-08 47349 chr11 55110728 55110728 1 + G T COAD 55110725 + 55110705 55110745 41 TTGTCCTCCTGGGCCTCACTCAAGATCCTGATGTGAAAAAA TTGTCCTCCTGGGCCTCACTCAATATCCTGATGTGAAAAAA < 41bp 0.834655522267005 0.514264755269025 0.8442873 0.4419416 prediction 0.640781533995961 Functional Loss - OR4A16 ENSG00000181961 CDS Human protein_coding chr11:55110725 chr11:55110728 nonsynonymous SNV 0.198 1 24 hm5C_associated_SNPs_51997 0 0 0 0 0 unknown 0.500231643921092 0.500231643921027 0.6885746 1.31006316905768e-13 hm5C_site_47349 DeepMRMD:0.6885746;iRNA_m5C:1.31006316905768e-13 47350 chr1 167086597 167086597 1 + G T ACC 167086595 + 167086575 167086615 41 ACCGGGGGTCAGAGCAGACGCAGAGTGTCCAGGCATGCTGG ACCGGGGGTCAGAGCAGACGCATAGTGTCCAGGCATGCTGG < 41bp 0.830335689462459 0.509949648188332 0.50013334 0.09419721 prediction 0.640772082548254 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167086595 chr1:167086597 stopgain 0.675 0 23 hm5C_associated_SNPs_51998 0 0 0 0 1 Endoplasmic reticulum 0.500231643921647 0.500231644065347 0.000266679999999964 0 hm5C_site_47350 DeepMRMD:0.000266679999999964;iRNA_m5C:0 47351 chr15 89198669 89198669 1 + G T LUAD 89198666 + 89198646 89198686 41 AACAGCCTGCTTGGACACAGCTCGGTGGAAGATGCGAGGGC AACAGCCTGCTTGGACACAGCTCTGTGGAAGATGCGAGGGC < 41bp 0.820383276587749 0.456884645191504 0.21360174 0.11574307 prediction 0.640766553175498 Functional Loss - ISG20 ENSG00000172183 CDS Human protein_coding chr15:89198666 chr15:89198669 synonymous SNV . 0 24 hm5C_associated_SNPs_51999 0 0 1 0 1 Cytosol 0.500231644434374 0.50029190937862 0 0 hm5C_site_47351 DeepMRMD:0;iRNA_m5C:0 47352 chr4 184240744 184240744 1 + C A UCEC 184240747 - 184240727 184240767 41 CACAAACACAAGATCATCATCAAGAACTGGAGACGAGAAAC CACAAACACAAGATCATCATCAATAACTGGAGACGAGAAAC < 41bp 0.84986306041654 0.529489950032495 0.28097153 0.08117935 prediction 0.640746220768089 Functional Loss - CLDN22 ENSG00000177300 CDS Human protein_coding chr4:184240747 chr4:184240744 stopgain 0.001 0 24 hm5C_associated_SNPs_52000 0 0 0 0 0 exosome 0.500238790408832 0.500230876409926 0 1.58279978115239e-05 hm5C_site_47352 DeepMRMD:0;iRNA_m5C:1.58279978115239e-05 47353 chr6 44122616 44122616 1 + A C CESC 44122612 + 44122592 44122632 41 GCCTCATAGAGAATGAGATTCACCAGTAAGGGGAGGGAGGG GCCTCATAGAGAATGAGATTCACCCGTAAGGGGAGGGAGGG < 41bp 0.820357792130629 0.436711037540619 0.4929826 0.25776535 prediction 0.640715584261258 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44122612 chr6:44122616 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_52001 0 0 1 0 0 Ribosome 0.500231643922326 0.500230989043297 0 1.30975805689992e-06 hm5C_site_47353 DeepMRMD:0;iRNA_m5C:1.30975805689992e-06 47354 chr19 4651902 4651902 1 + G T UCEC 4651899 + 4651879 4651919 41 GCCATGGACACCTTCAGCACCAAGAGCCTGGCTCTGCAGGC GCCATGGACACCTTCAGCACCAATAGCCTGGCTCTGCAGGC < 41bp 0.866395329028248 0.546042426372128 0.19829667 0.040554613 prediction 0.640705805312241 Functional Loss - TNFAIP8L1 ENSG00000185361 CDS Human protein_coding chr19:4651899 chr19:4651902 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_52002 0 0 1 0 1 Cytosol 0.500231112105506 0.500231639752741 0 0 hm5C_site_47354 DeepMRMD:0;iRNA_m5C:0 47355 chr9 139815618 139815618 1 + G T SARC 139815615 + 139815595 139815635 41 TGGAAGATCTCAGACTTCGCCAGGAAGCGCCAGGAAGCTGT TGGAAGATCTCAGACTTCGCCAGTAAGCGCCAGGAAGCTGT < 41bp 0.873042749734729 0.552703692952935 0.87170124 0.26254612 prediction 0.640678113563589 Functional Loss - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139815615 chr9:139815618 nonsynonymous SNV 0.909 3 24 hm5C_associated_SNPs_52003 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921342 0.74340248 0 hm5C_site_47355 DeepMRMD:0.74340248;iRNA_m5C:0 47356 chr7 66483040 66483040 1 + G T UCEC 66483037 + 66483017 66483057 41 AAGTCCTGTGGCGGCCACTGCAAGAAAGGCAAATGTGAATC AAGTCCTGTGGCGGCCACTGCAATAAAGGCAAATGTGAATC < 41bp 0.820336944581681 0.459719320389641 0.64018095 0.27289695 prediction 0.640673889163362 Functional Loss - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66483037 chr7:66483040 nonsynonymous SNV 0.812 0 24 hm5C_associated_SNPs_52004 0 0 0 2 1 Endoplasmic reticulum 0.500231643908406 0.500231643924259 0.2803619 0 hm5C_site_47356 DeepMRMD:0.2803619;iRNA_m5C:0 47357 chr7 37988620 37988620 1 + G T HNSC 37988617 + 37988597 37988637 41 CTCAGGAGCAGATCACCGTCCAGGAGTGGTCGGACAGAAAG CTCAGGAGCAGATCACCGTCCAGTAGTGGTCGGACAGAAAG < 41bp 0.859433180923863 0.539099375874218 0.8573081 0.5043784 prediction 0.640667610099292 Functional Loss - EPDR1 ENSG00000086289 CDS Human protein_coding chr7:37988617 chr7:37988620 stopgain 0.984 1 24 hm5C_associated_SNPs_52005 0 0 1 0 1 Ribosome 0.500231635343812 0.500231643921092 0.7058594 0 hm5C_site_47357 DeepMRMD:0.7058594;iRNA_m5C:0 47358 chr15 42113112 42113112 1 + G T LUAD 42113109 + 42113089 42113129 41 AAGAGGGCGCTGGGTTCAGCCAGGTGTGGAACTGAGCGTTA AAGAGGGCGCTGGGTTCAGCCAGTTGTGGAACTGAGCGTTA < 41bp 0.820324837808975 0.457164973311114 0.8886164 0.44733757 prediction 0.640649675617949 Functional Loss - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42113109 chr15:42113112 nonsynonymous SNV 0.972 2 24 hm5C_associated_SNPs_52006 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921093 0.7772328 0 hm5C_site_47358 DeepMRMD:0.7772328;iRNA_m5C:0 47359 chr10 3189878 3189878 1 + G T STAD 3189875 + 3189855 3189895 41 GGAATTCCATTGGCGAGCTCCTGGGCGGTCATCTTCACCAG GGAATTCCATTGGCGAGCTCCTGTGCGGTCATCTTCACCAG < 41bp 0.86014517962372 0.539854266283753 0.873605 0.25541452 prediction 0.640581826679935 Functional Loss - PITRM1 ENSG00000107959 CDS Human protein_coding chr10:3189875 chr10:3189878 synonymous SNV . 0 24 hm5C_associated_SNPs_52007 0 0 0 0 0 Endoplasmic reticulum 0.500231644090134 0.500231643920895 0.74721 3.38479688721804e-10 hm5C_site_47359 DeepMRMD:0.74721;iRNA_m5C:3.38479688721804e-10 47360 chr9 40715911 40715911 1 + G T LUAD 40715908 + 40715888 40715928 41 GAGACAGCTCAGAGGCTGTCCCGGAGAAGACGTGGAAAGAG GAGACAGCTCAGAGGCTGTCCCGTAGAAGACGTGGAAAGAG < 41bp 0.863440390511381 0.543150599171768 0.8874717 0.40443382 prediction 0.640579582679225 Functional Loss - FAM74A3 ENSG00000204844 ncRNA_exonic Human other chr9:40715908 chr9:40715911 . . 0 24 hm5C_associated_SNPs_52008 0 0 0 0 0 unknown 0.500231643073558 0.500231635845208 0.7749434 1.44567000592843e-08 hm5C_site_47360 DeepMRMD:0.7749434;iRNA_m5C:1.44567000592843e-08 47361 chr19 17000053 17000053 1 + G T SARC 17000050 + 17000030 17000070 41 GGTGCTGGGGTTCAGCCTGTCTGGCGGCACCCAGACCCCCA GGTGCTGGGGTTCAGCCTGTCTGTCGGCACCCAGACCCCCA < 41bp 0.820283969784877 0.471685242417076 0.45706272 0.11243084 prediction 0.640567939569753 Functional Loss - F2RL3 ENSG00000127533 CDS Human protein_coding chr19:17000050 chr19:17000053 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_52009 0 0 0 0 1 chromatin 0.500231643921094 0.500231643920997 0 1.94066984704477e-13 hm5C_site_47361 DeepMRMD:0;iRNA_m5C:1.94066984704477e-13 47362 chr17 8172066 8172066 1 + G T STAD 8172064 + 8172044 8172084 41 TCTGCTACGCCACAACCTGTCTGGGCGCTACGAGTCTCGCT TCTGCTACGCCACAACCTGTCTTGGCGCTACGAGTCTCGCT < 41bp 0.822583667840649 0.502304049642899 0.46622854 0.30488837 prediction 0.640559236395501 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8172064 chr17:8172066 nonsynonymous SNV 0.234 4 23 hm5C_associated_SNPs_52010 0 0 1 0 0 Nucleus 0.500232208963553 0.50023164340806 0 1.13111098443142e-06 hm5C_site_47362 DeepMRMD:0;iRNA_m5C:1.13111098443142e-06 47363 chr15 58834784 58834784 1 + G T LUAD 58834781 + 58834761 58834801 41 TTCACCTAATTGGGTACAGCCTGGGTGCACACGTGTCAGGA TTCACCTAATTGGGTACAGCCTGTGTGCACACGTGTCAGGA < 41bp 0.820278366627181 0.452109342108018 0.7263435 0.0852429 prediction 0.640556733254362 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834781 chr15:58834784 nonsynonymous SNV 0.865 5 24 hm5C_associated_SNPs_52011 0 0 1 0 2 Endoplasmic reticulum 0.5002307631204 0.500231640251121 0.452687 0 hm5C_site_47363 DeepMRMD:0.452687;iRNA_m5C:0 47364 chr19 49133765 49133765 1 + G T ESCA 49133762 + 49133742 49133782 41 GACGACAGCCCGGAGCTGCCCACGGGCTGCAGCCAGTATGC GACGACAGCCCGGAGCTGCCCACTGGCTGCAGCCAGTATGC < 41bp 0.869715236768243 0.549443368449367 0.7478599 0.25856394 prediction 0.640543736637752 Functional Loss - DBP;SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49133762 chr19:49133765 nonsynonymous SNV 0.047 1 24 hm5C_associated_SNPs_52012 0 0 0 0 1 unknown 0.500231581163158 0.500238120543318 0.4957198 0 hm5C_site_47364 DeepMRMD:0.4957198;iRNA_m5C:0 47365 chr5 148207496 148207496 1 + G T SKCM 148207493 + 148207473 148207513 41 CAGGGGAGCAGAGTGGATATCACGTGGAACAGGAGAAAGAA CAGGGGAGCAGAGTGGATATCACTTGGAACAGGAGAAAGAA < 41bp 0.820260958483271 0.464159738768126 0.79584146 0.12869072 prediction 0.640521916966543 Functional Loss - ADRB2 ENSG00000169252 CDS Human protein_coding chr5:148207493 chr5:148207496 nonsynonymous SNV 0.040 0 24 hm5C_associated_SNPs_52013 0 0 0 0 0 Cytoplasm 0.500231644829491 0.500231643921093 0.59168292 1.81679649102762e-09 hm5C_site_47365 DeepMRMD:0.59168292;iRNA_m5C:1.81679649102762e-09 47366 chr7 129394914 129394914 1 + G T STAD 129394911 + 129394891 129394931 41 CTGTGGTGACCAGCCTCGCCCAGGGCAACGGACCAGTGCAG CTGTGGTGACCAGCCTCGCCCAGTGCAACGGACCAGTGCAG < 41bp 0.82023626190821 0.460865080115113 0.8847393 0.32915792 prediction 0.640472523816421 Functional Loss - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394911 chr7:129394914 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52014 0 0 1 0 1 chromatin 0.500231487425541 0.500231645216678 0.7694786 0 hm5C_site_47366 DeepMRMD:0.7694786;iRNA_m5C:0 47367 chr19 7987708 7987708 1 + G T rs56011348 7987705 + 7987685 7987725 41 CGCCCTGCCCCTCGGTTCTGCTCGGCTGGCCCTGGCTCTTT CGCCCTGCCCCTCGGTTCTGCTCTGCTGGCCCTGGCTCTTT < 41bp 0.854570940356867 0.534337831383355 0.24496797 0.135319 prediction 0.640466217947025 Functional Loss - SNAPC2 ENSG00000104976 UTR3 Human protein_coding chr19:7987705 chr19:7987708 . . 0 24 hm5C_associated_SNPs_52015 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643875106 0 9.19757603412563e-11 hm5C_site_47367 DeepMRMD:0;iRNA_m5C:9.19757603412563e-11 47368 chr11 5373278 5373278 1 + G T UCEC 5373275 + 5373255 5373295 41 CCCATGCTTTCTGTCTACACCAAGATGTCATCAAGCTAGCC CCCATGCTTTCTGTCTACACCAATATGTCATCAAGCTAGCC < 41bp 0.820225804061685 0.466216198204934 0.025025368 0.0064597726 prediction 0.640451608123371 Functional Loss - OR51B6 ENSG00000176239 CDS Human protein_coding chr11:5373275 chr11:5373278 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_52016 0 0 0 0 0 unknown 0.500231643925534 0.500231628296469 0 3.12581307504445e-08 hm5C_site_47368 DeepMRMD:0;iRNA_m5C:3.12581307504445e-08 47369 chr4 134071419 134071419 1 + G T LUAD 134071416 + 134071396 134071436 41 TGGGGAATATCGCTGAAGATCTGGGTCTGGACATTACAAAA TGGGGAATATCGCTGAAGATCTGTGTCTGGACATTACAAAA < 41bp 0.820224119590501 0.46177691516716 0.6300131 0.11664468 prediction 0.640448239181003 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134071416 chr4:134071419 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52017 0 0 0 0 0 cytosol 0.500231644442021 0.500231644398768 0.2600262 8.65056914989282e-11 hm5C_site_47369 DeepMRMD:0.2600262;iRNA_m5C:8.65056914989282e-11 47370 chr14 20403888 20403888 1 + G T ESCA 20403885 + 20403865 20403905 41 CTTTTGGGACTCTCTAATTCCTGGGGACTTCAACTTTTCTT CTTTTGGGACTCTCTAATTCCTGTGGACTTCAACTTTTCTT < 41bp 0.820210287152289 0.479612746518698 0.14401329 0.04803726 prediction 0.640420574304578 Functional Loss - OR4K1 ENSG00000155249 CDS Human protein_coding chr14:20403885 chr14:20403888 nonsynonymous SNV 0.976 0 24 hm5C_associated_SNPs_52018 0 0 0 0 0 unknown 0.500231653227002 0.500221270815476 0 2.07648230516888e-05 hm5C_site_47370 DeepMRMD:0;iRNA_m5C:2.07648230516888e-05 47371 chr11 60610082 60610082 1 + A C UCEC 60610078 + 60610058 60610098 41 TACCGCCGGTCCCAGGATCACCAGAGCCTTACCCCGGTCAG TACCGCCGGTCCCAGGATCACCAGCGCCTTACCCCGGTCAG < 41bp 0.857417643034047 0.537207762982083 0.86604184 0.5139955 prediction 0.640419760103926 Functional Loss - CCDC86 ENSG00000110104 CDS Human protein_coding chr11:60610078 chr11:60610082 nonsynonymous SNV 0.042 3 25 hm5C_associated_SNPs_52019 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921093 0.70409268 0 hm5C_site_47371 DeepMRMD:0.70409268;iRNA_m5C:0 47372 chr15 85523914 85523914 1 + G T rs115640954 85523911 + 85523891 85523931 41 GGGGGAGGAGCCCCAGCCACCAAGAAGTTAAGTGACTGGCC GGGGGAGGAGCCCCAGCCACCAATAAGTTAAGTGACTGGCC < 41bp 0.842579002094651 0.522371451154831 0.87700444 0.6809657 prediction 0.640415101879641 Functional Loss - PDE8A ENSG00000073417 UTR5 Human protein_coding chr15:85523911 chr15:85523914 . . 0 24 hm5C_associated_SNPs_52020 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.39207748 0 hm5C_site_47372 DeepMRMD:0.39207748;iRNA_m5C:0 47373 chr1 94064498 94064498 1 + A C rs531179382 94064494 + 94064474 94064514 41 CCAAAAAGAGCTGGCCTTGGCTGGAAGGTTCTGGCTAGGAG CCAAAAAGAGCTGGCCTTGGCTGGCAGGTTCTGGCTAGGAG < 41bp 0.826118671667323 0.505914546655024 0.2557215 0.2671238 prediction 0.640408250024598 Functional Loss - LOC100129046 ENSG00000224093 ncRNA_exonic Human antisense chr1:94064494 chr1:94064498 . . 0 25 hm5C_associated_SNPs_52021 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_47373 DeepMRMD:0;iRNA_m5C:0 47374 chr5 140773767 140773767 1 + G T UCEC 140773764 + 140773744 140773784 41 CCTCCTACTCAGCGTATATCCTAGAGAACAACCTGAGAGGA CCTCCTACTCAGCGTATATCCTATAGAACAACCTGAGAGGA < 41bp 0.820185117870156 0.479200861664457 0.32713962 0.21807295 prediction 0.640370235740311 Functional Loss - PCDHGA8 ENSG00000253767 CDS Human protein_coding chr5:140773764 chr5:140773767 stopgain 0.996 0 24 hm5C_associated_SNPs_52022 0 0 0 0 0 exosome 0.50023164153386 0.500231640750894 0 1.56593316091858e-09 hm5C_site_47374 DeepMRMD:0;iRNA_m5C:1.56593316091858e-09 47375 chr14 75936353 75936353 1 + G T rs192231453 75936350 + 75936330 75936370 41 TGAAACTCAGATCAGCCACCCAGGAGGAAGAGCGGGCTGAG TGAAACTCAGATCAGCCACCCAGTAGGAAGAGCGGGCTGAG < 41bp 0.863001441911928 0.542825506751128 0.86118376 0.39014918 prediction 0.6403518703216 Functional Loss - JDP2 ENSG00000140044 UTR3 Human protein_coding chr14:75936350 chr14:75936353 . . 0 24 hm5C_associated_SNPs_52023 0 0 0 0 0 Ribosome 0.500231643828447 0.500231643920904 0.72236752 0 hm5C_site_47375 DeepMRMD:0.72236752;iRNA_m5C:0 47376 chr16 21726376 21726376 1 + G T LUAD 21726374 + 21726354 21726394 41 GTCAGCACCCAGGCCTTCTGCAGCATGAAACGCAAGGACAT GTCAGCACCCAGGCCTTCTGCATCATGAAACGCAAGGACAT < 41bp 0.823906639911868 0.503734043403654 0.4758305 0.19419491 prediction 0.640345193016427 Functional Loss - OTOA ENSG00000155719 CDS Human protein_coding chr16:21726374 chr16:21726376 nonsynonymous SNV 0.882 0 23 hm5C_associated_SNPs_52024 0 0 0 0 2 exosome 0.500238187031507 0.500222024884102 0 3.23242948085944e-05 hm5C_site_47376 DeepMRMD:0;iRNA_m5C:3.23242948085944e-05 47377 chr12 75804385 75804385 1 + A C STAD 75804381 + 75804361 75804401 41 TTTACTGCAAGTATTGCTATCAGAAGTTGGCATGCAGAGAA TTTACTGCAAGTATTGCTATCAGACGTTGGCATGCAGAGAA < 41bp 0.820155094076422 0.463516151923739 0.8633685 0.57137084 prediction 0.640310188152844 Functional Loss - GLIPR1L2 ENSG00000180481 CDS Human protein_coding chr12:75804381 chr12:75804385 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_52025 0 0 0 0 1 exosome 0.500231662933128 0.500226560460717 0.58399532 1.02049448218455e-05 hm5C_site_47377 DeepMRMD:0.58399532;iRNA_m5C:1.02049448218455e-05 47378 chrX 78010975 78010975 1 + G T UCEC 78010972 + 78010952 78010992 41 GTCTGGAAGACTTATTTATCCAAGATCACAATATTTATTGA GTCTGGAAGACTTATTTATCCAATATCACAATATTTATTGA < 41bp 0.842136448153286 0.522006954652454 0.41091242 0.113241166 prediction 0.640258987001664 Functional Loss - LPAR4 ENSG00000147145 CDS Human protein_coding chrX:78010972 chrX:78010975 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52026 0 0 0 0 0 exosome 0.500231643921092 0.500231643928658 0 0 hm5C_site_47378 DeepMRMD:0;iRNA_m5C:0 47379 chrX 27839718 27839718 1 + G T UCEC 27839715 + 27839695 27839735 41 AAGAAAGGCCAATATGCACACAAGATCTAGAAGCCACTGAT AAGAAAGGCCAATATGCACACAATATCTAGAAGCCACTGAT < 41bp 0.820121901191047 0.463580746504647 0.35339335 0.034202665 prediction 0.640243802382093 Functional Loss - MAGEB10 ENSG00000177689 CDS Human protein_coding chrX:27839715 chrX:27839718 nonsynonymous SNV 0.004 2 24 hm5C_associated_SNPs_52027 0 0 0 0 0 Nucleus 0.500231643897741 0.500231642939074 0 1.91733340315636e-09 hm5C_site_47379 DeepMRMD:0;iRNA_m5C:1.91733340315636e-09 47380 chr16 84363181 84363181 1 + G T rs529331736 84363178 + 84363158 84363198 41 CAGCTCCACGAGACCTTTACCCCGGGAAGAAGCCGCCACCC CAGCTCCACGAGACCTTTACCCCTGGAAGAAGCCGCCACCC < 41bp 0.820076680979275 0.493188075034256 0.1731956 0.15767491 prediction 0.640153361958549 Functional Loss - WFDC1 ENSG00000103175 UTR3 Human protein_coding chr16:84363178 chr16:84363181 . . 0 24 hm5C_associated_SNPs_52028 0 0 0 0 0 exosome 0.500231643921093 0.500231643983386 0 0 hm5C_site_47380 DeepMRMD:0;iRNA_m5C:0 47381 chr14 74062279 74062279 1 + A C GBM 74062275 + 74062255 74062295 41 CCAGGGCTCATTCTAAGGCCCAGGAAGATGCCTGGAAGCAA CCAGGGCTCATTCTAAGGCCCAGGCAGATGCCTGGAAGCAA < 41bp 0.820072335997149 0.446369422817289 0.5217309 0.31468922 prediction 0.640144671994298 Functional Loss - ACOT4 ENSG00000177465 CDS Human protein_coding chr14:74062275 chr14:74062279 nonsynonymous SNV 0.591 0 25 hm5C_associated_SNPs_52029 0 0 0 0 0 exosome 0.500231643921092 0.500231643920557 0.0434618 1.07047704034358e-12 hm5C_site_47381 DeepMRMD:0.0434618;iRNA_m5C:1.07047704034358e-12 47382 chr2 44073344 44073344 1 + G T UCEC 44073341 + 44073321 44073361 41 TTTGAGCAGCTGGCTCAGTTCAAGATGCCCTGGACATCTCC TTTGAGCAGCTGGCTCAGTTCAATATGCCCTGGACATCTCC < 41bp 0.8753273849747 0.555256029841338 0.46005845 0.14437285 prediction 0.640142710266723 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44073341 chr2:44073344 nonsynonymous SNV 0.978 3 24 hm5C_associated_SNPs_52030 0 0 0 0 1 cytosol 0.500231643921018 0.500231643921238 0 0 hm5C_site_47382 DeepMRMD:0;iRNA_m5C:0 47383 chr1 238090292 238090292 1 + G T LUAD 238090289 + 238090269 238090309 41 ATGGGCCAGAAGGACTCCTACGTGGGCGACAAGGCCCAGAG ATGGGCCAGAAGGACTCCTACGTTGGCGACAAGGCCCAGAG < 41bp 0.820068247337101 0.479367034934263 0.8254255 0.13540205 prediction 0.640136494674201 Functional Loss - LOC100130331 ENSG00000237250;ENSG00000243781 ncRNA_exonic Human other chr1:238090289 chr1:238090292 . . 0 24 hm5C_associated_SNPs_52031 0 0 1 0 0 unknown 0.500231643921092 0.500231643925446 0.650851 0 hm5C_site_47383 DeepMRMD:0.650851;iRNA_m5C:0 47384 chr9 90501456 90501456 1 + G T LUAD 90501453 + 90501433 90501473 41 CTCCCAGCCTTCTGACTTTGCAGGGAAGGGCAGGAAGGATG CTCCCAGCCTTCTGACTTTGCAGTGAAGGGCAGGAAGGATG < 41bp 0.875969553545561 0.555917844591234 0.7443621 0.10713422 prediction 0.640103417908653 Functional Loss - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90501453 chr9:90501456 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_52032 0 0 0 0 0 exosome 0.50023164392108 0.500231521351493 0.4887242 2.45139173404851e-07 hm5C_site_47384 DeepMRMD:0.4887242;iRNA_m5C:2.45139173404851e-07 47385 chr7 156743262 156743262 1 + A C LGG 156743258 + 156743238 156743278 41 GGAAAAGAAGGCGCAGGAAGCAGAAGCGCAGAGCGAGGACG GGAAAAGAAGGCGCAGGAAGCAGACGCGCAGAGCGAGGACG < 41bp 0.863333896933113 0.54328487879033 0.49943653 0.65973026 prediction 0.640098036285567 Functional Loss - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156743258 chr7:156743262 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_52033 0 0 1 0 0 Nucleus 0.500231647155185 0.500231643921418 0 6.46753339772488e-09 hm5C_site_47385 DeepMRMD:0;iRNA_m5C:6.46753339772488e-09 47386 chr13 88328487 88328487 1 + G T LUAD 88328484 + 88328464 88328504 41 ACTTGGACGAGGTATCCAAGCAGGAACTTTGCCCAAGGAGA ACTTGGACGAGGTATCCAAGCAGTAACTTTGCCCAAGGAGA < 41bp 0.868819758110642 0.548771516647504 0.81566226 0.32854354 prediction 0.640096482926277 Functional Loss - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88328484 chr13:88328487 stopgain 1.000 1 24 hm5C_associated_SNPs_52034 0 0 1 0 1 nucleus 0.500231642599589 0.500231643921092 0.63132452 0 hm5C_site_47386 DeepMRMD:0.63132452;iRNA_m5C:0 47387 chr5 140753731 140753731 1 + G T THYM 140753728 + 140753708 140753748 41 CTGGGGACGCTGTGGGGGGCCGCGGCAGCGCAGATCCGCTA CTGGGGACGCTGTGGGGGGCCGCTGCAGCGCAGATCCGCTA < 41bp 0.820032284399614 0.4691084507922 0.9010489 0.7974456 prediction 0.640064568799229 Functional Loss - PCDHGA6 ENSG00000253731 CDS Human protein_coding chr5:140753728 chr5:140753731 synonymous SNV . 0 24 hm5C_associated_SNPs_52035 0 0 0 0 0 exosome 0.500231643921096 0.500231643921093 0.2072066 5.99520433297585e-15 hm5C_site_47387 DeepMRMD:0.2072066;iRNA_m5C:5.99520433297585e-15 47388 chr11 65714655 65714655 1 + G T LUSC 65714653 + 65714633 65714673 41 GAGAGCATCGCCACAGATGTCCGGGCTGTGCTTCAGCCAAG GAGAGCATCGCCACAGATGTCCTGGCTGTGCTTCAGCCAAG < 41bp 0.820014059186066 0.491480378467526 0.90224457 0.39229214 prediction 0.640028118372133 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65714653 chr11:65714655 unknown 0.012 0 23 hm5C_associated_SNPs_52036 0 0 0 0 1 exosome 0.500231648485296 0.500231708222777 0.80448914 0 hm5C_site_47388 DeepMRMD:0.80448914;iRNA_m5C:0 47389 chr19 58983021 58983021 1 + G T PAAD 58983018 + 58982998 58983038 41 GCAACTCGCACCTGATCCAGCACGAGCGTACGCACACAGGC GCAACTCGCACCTGATCCAGCACTAGCGTACGCACACAGGC < 41bp 0.86701905276129 0.547021167046635 0.32233232 0.27175695 prediction 0.639995771429311 Functional Loss - ZNF324 ENSG00000083812 CDS Human protein_coding chr19:58983018 chr19:58983021 stopgain 0.975 1 24 hm5C_associated_SNPs_52037 0 0 0 0 0 Cytosol 0.500245372382918 0.500231695671227 0 2.73534233814487e-05 hm5C_site_47389 DeepMRMD:0;iRNA_m5C:2.73534233814487e-05 47390 chr17 7324698 7324698 1 + A C HNSC 7324694 + 7324674 7324714 41 TGCCAGAGGCAGAGGCGGCTCAGTACCAGCCTGTCCCAGCT TGCCAGAGGCAGAGGCGGCTCAGTCCCAGCCTGTCCCAGCT < 41bp 0.86709321328152 0.54710100006037 0.5248546 0.34440535 prediction 0.6399844264423 Functional Loss - SPEM1 ENSG00000181323 CDS Human protein_coding chr17:7324694 chr17:7324698 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_52038 0 0 0 0 0 exosome 0.500231642850691 0.500231605642551 0.0497091999999999 7.44162800270232e-08 hm5C_site_47390 DeepMRMD:0.0497091999999999;iRNA_m5C:7.44162800270232e-08 47391 chr19 58549479 58549479 1 + G T LUAD 58549477 + 58549457 58549497 41 CAGTTCCTGGGCGCGCTGCCCAGCAAGATGCGGACCTGGGT CAGTTCCTGGGCGCGCTGCCCATCAAGATGCGGACCTGGGT < 41bp 0.819985340151121 0.494139254616224 0.18948647 0.017899394 prediction 0.639970680302243 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58549477 chr19:58549479 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_52039 0 0 0 0 1 exosome 0.5002316438703 0.500231623583343 0 4.05739126740912e-08 hm5C_site_47391 DeepMRMD:0;iRNA_m5C:4.05739126740912e-08 47392 chr9 120474738 120474738 1 + G T LUSC 120474735 + 120474715 120474755 41 CCTCTCTACCTTAATATTGACAGGAAACCCCATCCAGAGTT CCTCTCTACCTTAATATTGACAGTAAACCCCATCCAGAGTT < 41bp 0.819969381436545 0.471832410252865 0.84579617 0.1184625 prediction 0.63993876287309 Functional Loss - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120474735 chr9:120474738 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52040 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0.69159234 0 hm5C_site_47392 DeepMRMD:0.69159234;iRNA_m5C:0 47393 chr3 128987831 128987831 1 + G T LUSC 128987828 + 128987808 128987848 41 AGAAAGTGGCAGCTACCAGGCAGGAGATCTTCCAGGGTGAG AGAAAGTGGCAGCTACCAGGCAGTAGATCTTCCAGGGTGAG < 41bp 0.876258063488379 0.556305008013016 0.41234168 0.1350989 prediction 0.639906110950725 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128987828 chr3:128987831 stopgain 1.000 1 24 hm5C_associated_SNPs_52041 0 0 1 0 1 Nucleus 0.500231643921093 0.500231643921093 0 0 hm5C_site_47393 DeepMRMD:0;iRNA_m5C:0 47394 chr6 3127546 3127546 1 + G T LUAD 3127543 + 3127523 3127563 41 AAGCTCTTCACGGTGGTCGCCTGGGATCCTCGAGGCTATGG AAGCTCTTCACGGTGGTCGCCTGTGATCCTCGAGGCTATGG < 41bp 0.819941673823808 0.458553503469237 0.3899346 0.019809932 prediction 0.639883347647615 Functional Loss - BPHL ENSG00000137274 CDS Human protein_coding chr6:3127543 chr6:3127546 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_52042 0 0 1 0 2 Ribosome 0.500231644038904 0.50023164392318 0 2.31447305765187e-10 hm5C_site_47394 DeepMRMD:0;iRNA_m5C:2.31447305765187e-10 47395 chr2 44547380 44547380 1 + G T COAD 44547377 + 44547357 44547397 41 GATCGGCTTTGAAGTTATATCAAGATTTAAGTCTACTTCAT GATCGGCTTTGAAGTTATATCAATATTTAAGTCTACTTCAT < 41bp 0.819938708016147 0.481420894587802 0.5016601 0.118624896 prediction 0.639877416032295 Functional Loss - SLC3A1 ENSG00000138079 CDS Human protein_coding chr2:44547377 chr2:44547380 nonsynonymous SNV 0.944 2 24 hm5C_associated_SNPs_52043 0 0 0 0 1 exosome 0.500231643916148 0.500231643896251 0.00332020000000011 3.97946120500592e-11 hm5C_site_47395 DeepMRMD:0.00332020000000011;iRNA_m5C:3.97946120500592e-11 47396 chr1 229770932 229770932 1 + G T UCEC 229770929 + 229770909 229770949 41 CCTGCAGCAGCAGGTCAACCCAAGACGTGCCTTTGGGGATG CCTGCAGCAGCAGGTCAACCCAATACGTGCCTTTGGGGATG < 41bp 0.869173357520597 0.549242454583096 0.6057393 0.132474 prediction 0.639861805875001 Functional Loss - URB2 ENSG00000135763 CDS Human protein_coding chr1:229770929 chr1:229770932 nonsynonymous SNV 0.116 1 24 hm5C_associated_SNPs_52044 0 0 1 0 0 Nucleus 0.500231643921093 0.500231643919321 0.2114786 3.54360984999857e-12 hm5C_site_47396 DeepMRMD:0.2114786;iRNA_m5C:3.54360984999857e-12 47397 chr19 33597678 33597678 1 + G T COAD 33597675 + 33597655 33597695 41 CCCATGGTGGCCGCCACCTCCGAGAACTCACACTTACTGCA CCCATGGTGGCCGCCACCTCCGATAACTCACACTTACTGCA < 41bp 0.819928421094465 0.448199071151829 0.43513545 0.058654726 prediction 0.63985684218893 Functional Loss - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33597675 chr19:33597678 nonsynonymous SNV 0.018 1 24 hm5C_associated_SNPs_52045 0 0 1 0 1 Cytosol 0.500229735595683 0.500231643870738 0 0 hm5C_site_47397 DeepMRMD:0;iRNA_m5C:0 47398 chr2 37571895 37571895 1 + G T LUSC 37571892 + 37571872 37571912 41 GAGATGGCAGGCGGAAGACACCGGCGCGTCGTGGGCACCCT GAGATGGCAGGCGGAAGACACCGTCGCGTCGTGGGCACCCT < 41bp 0.819903756018796 0.461058846057719 0.84907854 0.17312142 prediction 0.639807512037592 Functional Loss - QPCT ENSG00000115828 CDS Human protein_coding chr2:37571892 chr2:37571895 synonymous SNV . 0 24 hm5C_associated_SNPs_52046 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0.69815708 2.22044604925031e-16 hm5C_site_47398 DeepMRMD:0.69815708;iRNA_m5C:2.22044604925031e-16 47399 chr15 43890409 43890409 1 + G T UCEC 43890406 + 43890386 43890426 41 CTCAGGTGGAGAGACTTATCCAAGAACGTGGCTGGGAGTTC CTCAGGTGGAGAGACTTATCCAATAACGTGGCTGGGAGTTC < 41bp 0.819896577459962 0.480872864705051 0.78782845 0.24736759 prediction 0.639793154919924 Functional Loss - CKMT1B ENSG00000237289 CDS Human protein_coding chr15:43890406 chr15:43890409 stopgain 0.962 1 24 hm5C_associated_SNPs_52047 0 0 0 0 1 Cytosol 0.500231644284317 0.500231643921092 0.5756569 7.26449345123115e-10 hm5C_site_47399 DeepMRMD:0.5756569;iRNA_m5C:7.26449345123115e-10 47400 chr17 26688278 26688278 1 + G T rs76813129 26688275 + 26688255 26688295 41 GCGAGCTGGGAGAACTGTAACTGGTGCTTCATCATCAAGTC GCGAGCTGGGAGAACTGTAACTGTTGCTTCATCATCAAGTC < 41bp 0.85643059595304 0.536534674793921 0.16892219 0.10728374 prediction 0.639791842318237 Functional Loss - TMEM199 ENSG00000258924 ncRNA_intronic Human processed_transcript chr17:26688275 chr17:26688278 . . 0 24 hm5C_associated_SNPs_52048 0 0 1 4 1 Ribosome 0.50023164363972 0.500232727239318 0 0 hm5C_site_47400 DeepMRMD:0;iRNA_m5C:0 47401 chr11 64005048 64005048 1 + A C SKCM 64005044 + 64005024 64005064 41 CACCACCAGCGCCCTGACCCCCGGACCTGCCGCTGCCGCTG CACCACCAGCGCCCTGACCCCCGGCCCTGCCGCTGCCGCTG < 41bp 0.819893989640012 0.45214742715935 0.8580203 0.8778529 prediction 0.639787979280025 Functional Loss - VEGFB ENSG00000173511 CDS Human protein_coding chr11:64005044 chr11:64005048 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_52049 0 0 1 0 2 Ribosome 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_47401 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 47402 chr19 58290630 58290630 1 + G T BLCA 58290627 + 58290607 58290647 41 ACATCTAGTCTCATTAAACACAGGAGGATTCACACTGGAGA ACATCTAGTCTCATTAAACACAGTAGGATTCACACTGGAGA < 41bp 0.819893102737527 0.465577444657228 0.5239719 0.23220226 prediction 0.639786205475054 Functional Loss - ZNF586 ENSG00000083828 CDS Human protein_coding chr19:58290627 chr19:58290630 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_52050 0 0 1 0 0 chromatin 0.500230924302336 0.500230678292211 0.0479438000000001 4.92020249653891e-07 hm5C_site_47402 DeepMRMD:0.0479438000000001;iRNA_m5C:4.92020249653891e-07 47403 chr9 129642775 129642775 1 + G T UCEC 129642772 + 129642752 129642792 41 CAGTCCCCGGGAGAGGAGTGCGAGAGGGCATTGGTACCCGT CAGTCCCCGGGAGAGGAGTGCGATAGGGCATTGGTACCCGT < 41bp 0.819889033386532 0.459348285346325 0.8573829 0.21943301 prediction 0.639778066773065 Functional Loss - ZBTB34 ENSG00000177125 CDS Human protein_coding chr9:129642772 chr9:129642775 nonsynonymous SNV 0.742 3 24 hm5C_associated_SNPs_52051 0 0 1 0 0 nucleoplasm 0.500231632395979 0.500231644010177 0.7147658 0 hm5C_site_47403 DeepMRMD:0.7147658;iRNA_m5C:0 47404 chr3 44935153 44935153 1 + G T UCEC 44935151 + 44935131 44935171 41 TGCCATTACGTGGGGGCTGCCAGAAGTATCAAATGCAAACC TGCCATTACGTGGGGGCTGCCATAAGTATCAAATGCAAACC < 41bp 0.819884703268921 0.495352419942246 0.8067547 0.30236995 prediction 0.639769406537843 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44935151 chr3:44935153 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_52052 0 0 0 0 2 exosome 0.500231643921092 0.500231643921066 0.6135094 5.37347943918576e-14 hm5C_site_47404 DeepMRMD:0.6135094;iRNA_m5C:5.37347943918576e-14 47405 chr10 134884535 134884535 1 + G T rs74161994 134884532 + 134884512 134884552 41 TGGCGCACGGTGCACACTGCCGAGGGGGCCGGACACCACAG TGGCGCACGGTGCACACTGCCGATGGGGCCGGACACCACAG < 41bp 0.833629937713974 0.513746660552529 0.9113351 0.2182177 prediction 0.63976655432289 Functional Loss - LINC01168;ADGRA1-AS1 ENSG00000197177 CDS Human protein_coding chr10:134884532 chr10:134884535 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_52053 0 0 0 0 0 unknown 0.500231594646925 0.500348011394653 0.8226702 0 hm5C_site_47405 DeepMRMD:0.8226702;iRNA_m5C:0 47406 chr12 644345 644345 1 + G T LUSC 644342 + 644322 644362 41 CCTTCCACAGGGTACGGCAGCTGGAGAGAACTGGCCAAGGC CCTTCCACAGGGTACGGCAGCTGTAGAGAACTGGCCAAGGC < 41bp 0.869714641040171 0.549842758762514 0.7547892 0.30489618 prediction 0.639743764555314 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:644342 chr12:644345 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52054 0 0 0 0 1 exosome 0.500231643921093 0.500231643921093 0.5095784 0 hm5C_site_47406 DeepMRMD:0.5095784;iRNA_m5C:0 47407 chr18 61570294 61570294 1 + A C LUAD 61570290 + 61570270 61570310 41 ATGGGCATGGAGGACGCCTTCAACAAGGGACGGGCCAATTT ATGGGCATGGAGGACGCCTTCAACCAGGGACGGGCCAATTT < 41bp 0.887896744037228 0.56803332964138 0.23115042 0.27733567 prediction 0.639726828791697 Functional Loss - SERPINB2 ENSG00000197632 CDS Human protein_coding chr18:61570290 chr18:61570294 nonsynonymous SNV 0.171 0 25 hm5C_associated_SNPs_52055 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0 1.55431223447522e-15 hm5C_site_47407 DeepMRMD:0;iRNA_m5C:1.55431223447522e-15 47408 chr1 228246746 228246746 1 + G T COAD 228246743 + 228246723 228246763 41 CACGGGCTGTCGGGCAGCTGCGAGGTGAAGACATGCTGGTG CACGGGCTGTCGGGCAGCTGCGATGTGAAGACATGCTGGTG < 41bp 0.819861399076063 0.451990407688093 0.91271555 0.5143482 prediction 0.639722798152127 Functional Loss - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228246743 chr1:228246746 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_52056 0 0 0 0 1 exosome 0.500231643206373 0.50023164392109 0.7967347 0 hm5C_site_47408 DeepMRMD:0.7967347;iRNA_m5C:0 47409 chr13 24890228 24890228 1 + A C rs4275724 24890224 + 24890204 24890244 41 CACCTGCAGGCAAGGGCACCCTGGAATCCCTGGGAACCCCG CACCTGCAGGCAAGGGCACCCTGGCATCCCTGGGAACCCCG < 41bp 0.88634297733021 0.566486743059964 0.38087693 0.09179425 prediction 0.639712468540493 Functional Loss - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24890224 chr13:24890228 synonymous SNV . 0 25 hm5C_associated_SNPs_52057 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47409 DeepMRMD:0;iRNA_m5C:0 47410 chr1 183195900 183195900 1 + G T LUAD 183195897 + 183195877 183195917 41 GTCTCTGGAGCCCCAGCACCCTGGGTTGAACAGTGTATATG GTCTCTGGAGCCCCAGCACCCTGTGTTGAACAGTGTATATG < 41bp 0.819853750922352 0.445870402126315 0.7959038 0.22809097 prediction 0.639707501844705 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183195897 chr1:183195900 nonsynonymous SNV 0.986 4 24 hm5C_associated_SNPs_52058 0 0 0 0 1 exosome 0.500231643921093 0.500231643919906 0.5918076 2.37365682664858e-12 hm5C_site_47410 DeepMRMD:0.5918076;iRNA_m5C:2.37365682664858e-12 47411 chr1 183195899 183195899 1 + G T LUAD 183195897 + 183195877 183195917 41 GTCTCTGGAGCCCCAGCACCCTGGGTTGAACAGTGTATATG GTCTCTGGAGCCCCAGCACCCTTGGTTGAACAGTGTATATG < 41bp 0.819853750922352 0.497727381031007 0.7959038 0.13764635 prediction 0.639707501844705 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183195897 chr1:183195899 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_52059 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0.5918076 1.33226762955019e-15 hm5C_site_47411 DeepMRMD:0.5918076;iRNA_m5C:1.33226762955019e-15 47412 chr5 140482048 140482048 1 + G T SARC 140482046 + 140482026 140482066 41 AGAACGCCTGGCTGTCGTACCAGCTGCTCAAGGCCACGGAG AGAACGCCTGGCTGTCGTACCATCTGCTCAAGGCCACGGAG < 41bp 0.821010405233755 0.501166318070048 0.90201557 0.24872604 prediction 0.639688174327414 Functional Loss - PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140482046 chr5:140482048 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_52060 0 0 0 0 0 exosome 0.500231644021915 0.500437836184689 0.80403114 0 hm5C_site_47412 DeepMRMD:0.80403114;iRNA_m5C:0 47413 chr1 110168957 110168957 1 + G T OV 110168954 + 110168934 110168974 41 CCTGCAGGCTCTACAAGGAACAGGGTGAGGGGCAGGGTGAC CCTGCAGGCTCTACAAGGAACAGTGTGAGGGGCAGGGTGAC < 41bp 0.81982276256806 0.445508155912758 0.8599204 0.3951522 prediction 0.63964552513612 Functional Loss - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168954 chr1:110168957 nonsynonymous SNV 0.951 2 24 hm5C_associated_SNPs_52061 0 0 1 2 2 Cytosol 0.500231643921092 0.500231643921093 0.7198408 0 hm5C_site_47413 DeepMRMD:0.7198408;iRNA_m5C:0 47414 chr18 28991326 28991326 1 + G T LUAD 28991323 + 28991303 28991343 41 CGCAGGAGCCTCAGGGGCCGCAAGGAAGAGGAGCTCTACCA CGCAGGAGCCTCAGGGGCCGCAATGAAGAGGAGCTCTACCA < 41bp 0.875705951159939 0.555889500183845 0.809696 0.4250251 prediction 0.639632901952188 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28991323 chr18:28991326 nonsynonymous SNV 0.172 2 24 hm5C_associated_SNPs_52062 0 0 0 0 1 exosome 0.500231643921079 0.500231643921902 0.619392 0 hm5C_site_47414 DeepMRMD:0.619392;iRNA_m5C:0 47415 chr10 26994282 26994282 1 + G T LUSC 26994279 + 26994259 26994299 41 AATACACCGATCCTTTCAAACTCGGTTGGAGAGACTTGAAA AATACACCGATCCTTTCAAACTCTGTTGGAGAGACTTGAAA < 41bp 0.819804788612456 0.469239182478868 0.28374594 0.09274995 prediction 0.639609577224911 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994279 chr10:26994282 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_52063 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643921094 0 0 hm5C_site_47415 DeepMRMD:0;iRNA_m5C:0 47416 chr17 79990299 79990299 1 + G T CESC 79990296 + 79990276 79990316 41 ACATGCTTGCTGATCAGCTACACGACCAACGCCTTCCCCGG ACATGCTTGCTGATCAGCTACACTACCAACGCCTTCCCCGG < 41bp 0.870798109304181 0.550997471666678 0.19146207 0.15127212 prediction 0.639601275275006 Functional Loss - RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990296 chr17:79990299 synonymous SNV . 0 24 hm5C_associated_SNPs_52064 0 0 1 0 2 Ribosome 0.500231645887371 0.500231643921094 0 3.9325540601709e-09 hm5C_site_47416 DeepMRMD:0;iRNA_m5C:3.9325540601709e-09 47417 chr19 40172674 40172674 1 + G T GBM 40172671 + 40172651 40172691 41 CTGCAGGTGGATTTCCATACCGAGATGAAGGAAGACTCAGA CTGCAGGTGGATTTCCATACCGATATGAAGGAAGACTCAGA < 41bp 0.837272886836804 0.517476553553576 0.5663133 0.17504638 prediction 0.639592666566455 Functional Loss - LGALS17A ENSG00000226025 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:40172671 chr19:40172674 . . 0 24 hm5C_associated_SNPs_52065 0 0 0 1 1 unknown 0.500231643899095 0.50023164392018 0.1326266 0 hm5C_site_47417 DeepMRMD:0.1326266;iRNA_m5C:0 47418 chr16 57736008 57736008 1 + G T ACC 57736005 + 57735985 57736025 41 CCTGTGCCACATGGACCTGACGCGGGAGGTGTGCCCACTCA CCTGTGCCACATGGACCTGACGCTGGAGGTGTGCCCACTCA < 41bp 0.880782007161897 0.560989054762759 0.413571 0.16386893 prediction 0.639585904798277 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57736005 chr16:57736008 nonsynonymous SNV 0.661 0 24 hm5C_associated_SNPs_52066 0 0 0 0 1 cytosol 0.500231661895094 0.500231643921074 0 3.59480398781642e-08 hm5C_site_47418 DeepMRMD:0;iRNA_m5C:3.59480398781642e-08 47419 chr13 41379289 41379289 1 + C A BLCA 41379291 - 41379271 41379311 41 GAGCACCAGTGCAGCAAAGGCAGAGGCGAAGGAACCGGCGG GAGCACCAGTGCAGCAAAGGCATAGGCGAAGGAACCGGCGG < 41bp 0.81978863953951 0.493995770143809 0.8883937 0.42188013 prediction 0.639577279079019 Functional Loss - SLC25A15 ENSG00000102743 CDS Human protein_coding chr13:41379291 chr13:41379289 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_52067 0 0 0 0 1 Ribosome 0.500231643921397 0.500231643921895 0.7767874 0 hm5C_site_47419 DeepMRMD:0.7767874;iRNA_m5C:0 47420 chr17 70119859 70119859 1 + G T LUAD 70119856 + 70119836 70119876 41 AGCGACGTCATCTCCAACATCGAGACCTTCGATGTCAACGA AGCGACGTCATCTCCAACATCGATACCTTCGATGTCAACGA < 41bp 0.819788619307364 0.451635994947028 0.3581837 0.100222886 prediction 0.639577238614727 Functional Loss - SOX9 ENSG00000125398 CDS Human protein_coding chr17:70119856 chr17:70119859 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52068 0 0 1 0 0 Cytosol 0.50023104455426 0.500231352176248 0 0 hm5C_site_47420 DeepMRMD:0;iRNA_m5C:0 47421 chr1 104163185 104163185 1 + G T LUAD 104163182 + 104163162 104163202 41 ATTTCTACTAGGTAATTGATCTGGGTGGTGAGCCAATTAAA ATTTCTACTAGGTAATTGATCTGTGTGGTGAGCCAATTAAA < 41bp 0.819782332426731 0.468288166795614 0.8649635 0.08079827 prediction 0.639564664853462 Functional Loss - AMY2A ENSG00000243480 CDS Human protein_coding chr1:104163182 chr1:104163185 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_52069 0 0 0 0 1 exosome 0.500231643921092 0.500231128863276 0.729927 1.03011563257205e-06 hm5C_site_47421 DeepMRMD:0.729927;iRNA_m5C:1.03011563257205e-06 47422 chr1 18149663 18149663 1 + G T UCEC 18149660 + 18149640 18149680 41 ATGCCCGTAGGCGTGTGAGCCTGGGCATCGACATTTGCCAT ATGCCCGTAGGCGTGTGAGCCTGTGCATCGACATTTGCCAT < 41bp 0.876804003246097 0.557023117148738 0.42579663 0.10271549 prediction 0.639561772194717 Functional Loss - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18149660 chr1:18149663 nonsynonymous SNV 0.931 5 24 hm5C_associated_SNPs_52070 0 0 0 0 0 unknown 0.500232353602809 0.500231643650916 0 1.4199037865481e-06 hm5C_site_47422 DeepMRMD:0;iRNA_m5C:1.4199037865481e-06 47423 chr10 86017689 86017689 1 + G T LUSC 86017687 + 86017667 86017707 41 GCAAGGACGCTGCTGCTCGGCTGGGGCCCCTATGCCATCCT GCAAGGACGCTGCTGCTCGGCTTGGGCCCCTATGCCATCCT < 41bp 0.82117023029016 0.501390461052093 0.7121328 0.093548626 prediction 0.639559538476134 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86017687 chr10:86017689 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_52071 0 0 0 0 2 unknown 0.500231638665795 0.500231643921104 0.4242656 0 hm5C_site_47423 DeepMRMD:0.4242656;iRNA_m5C:0 47424 chr13 114290334 114290334 1 + G T LUAD 114290332 + 114290312 114290352 41 GGTGCAGAGAAACCGGCATGCGGAGCAGCAGGCCAGCCGGC GGTGCAGAGAAACCGGCATGCGTAGCAGCAGGCCAGCCGGC < 41bp 0.83664110965439 0.516884021925608 0.87732834 0.40697747 prediction 0.639514175457565 Functional Loss - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290332 chr13:114290334 stopgain 0.826 1 23 hm5C_associated_SNPs_52072 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643866981 0.75465668 1.08221875905201e-10 hm5C_site_47424 DeepMRMD:0.75465668;iRNA_m5C:1.08221875905201e-10 47425 chr5 23522919 23522919 1 + G T ESCA 23522917 + 23522897 23522937 41 ATGAGGCATCTGATCTGCCGCTGGGTCTGCACTTTGGCCCT ATGAGGCATCTGATCTGCCGCTTGGTCTGCACTTTGGCCCT < 41bp 0.828087634794435 0.508336667174119 0.51111054 0.056384772 prediction 0.639501935240632 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522917 chr5:23522919 synonymous SNV . 0 23 hm5C_associated_SNPs_52073 0 0 0 0 1 unknown 0.500231637707613 0.50023157209822 0.02222108 1.31218785393017e-07 hm5C_site_47425 DeepMRMD:0.02222108;iRNA_m5C:1.31218785393017e-07 47426 chr15 49716655 49716655 1 + G T UCEC 49716652 + 49716632 49716672 41 TTCCAGCCCTGAGCGACACACAAGAAGTTATGATTACATGG TTCCAGCCCTGAGCGACACACAATAAGTTATGATTACATGG < 41bp 0.819743787510101 0.477097991126201 0.5719226 0.22550568 prediction 0.639487575020203 Functional Loss - FGF7 ENSG00000140285 CDS Human protein_coding chr15:49716652 chr15:49716655 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52074 0 0 0 0 0 nucleus 0.500231643921029 0.50023164392106 0.1438452 0 hm5C_site_47426 DeepMRMD:0.1438452;iRNA_m5C:0 47427 chrX 69504764 69504764 1 + A C rs2275410 69504760 + 69504740 69504780 41 CTGTAGAGAATACAGTTCTACAGCAGCTGACATACTTCAAA CTGTAGAGAATACAGTTCTACAGCCGCTGACATACTTCAAA < 41bp 0.820934024383761 0.501196514933455 0.094603986 0.12042239 prediction 0.639475018900612 Functional Loss - RAB41 ENSG00000147127 UTR3 Human protein_coding chrX:69504760 chrX:69504764 . . 0 25 hm5C_associated_SNPs_52075 0 0 0 0 0 exosome 0.500230106843917 0.500231646605828 0 0 hm5C_site_47427 DeepMRMD:0;iRNA_m5C:0 47428 chr11 812565 812565 1 + G T HNSC 812562 + 812542 812582 41 CAAGCTTGCCAGTGTACCTGCTGGTGGGGCTGTAGCCGTCT CAAGCTTGCCAGTGTACCTGCTGTTGGGGCTGTAGCCGTCT < 41bp 0.819734739714579 0.446989917759243 0.33916712 0.22682193 prediction 0.639469479429158 Functional Loss - RPLP2 ENSG00000177600 CDS Human protein_coding chr11:812562 chr11:812565 nonsynonymous SNV 0.897 4 24 hm5C_associated_SNPs_52076 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47428 DeepMRMD:0;iRNA_m5C:0 47429 chrX 48418242 48418242 1 + G T LIHC 48418239 + 48418219 48418259 41 GCCCACATCTACGGGCGCTGCACGACCTGCTCACCACCTAT GCCCACATCTACGGGCGCTGCACTACCTGCTCACCACCTAT < 41bp 0.819713265033421 0.457474923371225 0.1709373 0.07829702 prediction 0.639426530066842 Functional Loss - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48418239 chrX:48418242 nonsynonymous SNV 0.913 4 24 hm5C_associated_SNPs_52077 0 0 0 0 0 nucleolus 0.500231643921092 0.500231643921092 0 1.33226762955019e-15 hm5C_site_47429 DeepMRMD:0;iRNA_m5C:1.33226762955019e-15 47430 chr11 47260393 47260393 1 + G T UCEC 47260390 + 47260370 47260410 41 GAGCCAGGAGGAAGCCAGGACACGGAAGTGAGAGACACTAA GAGCCAGGAGGAAGCCAGGACACTGAAGTGAGAGACACTAA < 41bp 0.819700937401492 0.467180457558118 0.39534828 0.2772029 prediction 0.639401874802984 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47260390 chr11:47260393 nonsynonymous SNV 0.117 0 24 hm5C_associated_SNPs_52078 0 0 1 0 1 Cytosol 0.50023164358221 0.500231642426151 0 2.31211805257203e-09 hm5C_site_47430 DeepMRMD:0;iRNA_m5C:2.31211805257203e-09 47431 chr1 19992849 19992849 1 + G T THCA 19992846 + 19992826 19992866 41 GGCCTCACCTTCTTCCTGCCCTCGGGTGCCATATGCTTCAC GGCCTCACCTTCTTCCTGCCCTCTGGTGCCATATGCTTCAC < 41bp 0.853425360851454 0.533727332805037 0.12254053 0.09177238 prediction 0.639396056092834 Functional Loss - HTR6 ENSG00000158748 CDS Human protein_coding chr1:19992846 chr1:19992849 synonymous SNV . 0 24 hm5C_associated_SNPs_52079 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643933097 0 0 hm5C_site_47431 DeepMRMD:0;iRNA_m5C:0 47432 chr3 100148683 100148683 1 + A C rs201658663 100148679 + 100148659 100148699 41 ATCAGAGAGGACTCCGGGAACGCCACCGACTGCAAGCCACC ATCAGAGAGGACTCCGGGAACGCCCCCGACTGCAAGCCACC < 41bp 0.896354131374523 0.576666763726573 0.2773239 0.098659664 prediction 0.6393747352959 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100148679 chr3:100148683 nonsynonymous SNV 0.171 1 25 hm5C_associated_SNPs_52080 0 0 0 0 1 chromatin 0.500231643918848 0.500231643921092 0 0 hm5C_site_47432 DeepMRMD:0;iRNA_m5C:0 47433 chr11 118944057 118944057 1 + G T UCEC 118944054 + 118944034 118944074 41 GGGCTCCCTGTACGTGCTGACGCGGGATGGGCGGGTCCACG GGGCTCCCTGTACGTGCTGACGCTGGATGGGCGGGTCCACG < 41bp 0.819658952746613 0.451366077660549 0.8524653 0.36150742 prediction 0.639317905493225 Functional Loss - VPS11 ENSG00000160695 CDS Human protein_coding chr11:118944054 chr11:118944057 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_52081 0 0 1 0 0 cytosol 0.500231643921094 0.500231531154887 0.7049306 2.255324134115e-07 hm5C_site_47433 DeepMRMD:0.7049306;iRNA_m5C:2.255324134115e-07 47434 chrX 153062964 153062964 1 + G T LUAD 153062961 + 153062941 153062981 41 GAAAACAATTCCCTGTCACTCGAGGCCAGGATGTGGGGCGT GAAAACAATTCCCTGTCACTCGATGCCAGGATGTGGGGCGT < 41bp 0.819646328901039 0.452202373353852 0.9449369 0.92502904 prediction 0.639292657802077 Functional Loss - SSR4 ENSG00000180879 CDS Human protein_coding chrX:153062961 chrX:153062964 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_52082 0 0 1 0 2 Ribosome 0.500231643921092 0.500231651317186 0.03981572 0 hm5C_site_47434 DeepMRMD:0.03981572;iRNA_m5C:0 47435 chr9 40715993 40715993 1 + G T COAD 40715991 + 40715971 40716011 41 GTCCCAAACAAGAGAGAGCTCAGAGGCTGTCCCAGAGAAGA GTCCCAAACAAGAGAGAGCTCATAGGCTGTCCCAGAGAAGA < 41bp 0.819626494982591 0.496661832307798 0.8566742 0.381956 prediction 0.639252989965181 Functional Loss - FAM74A3 ENSG00000204844 ncRNA_exonic Human other chr9:40715991 chr9:40715993 . . 0 23 hm5C_associated_SNPs_52083 0 0 0 2 0 unknown 0.50075133036388 0.500231647435476 0.7133484 0.00103936585680731 hm5C_site_47435 DeepMRMD:0.7133484;iRNA_m5C:0.00103936585680731 Parkinson's disease 47436 chrX 150869277 150869277 1 + G T COAD 150869275 + 150869255 150869295 41 GAGAGGCAGCGAACAGCCCCCAGGTGGTGCTGGGGCCCAGT GAGAGGCAGCGAACAGCCCCCATGTGGTGCTGGGGCCCAGT < 41bp 0.828351124501885 0.508727359021199 0.897565 0.3491121 prediction 0.639247530961371 Functional Loss - PRRG3 ENSG00000130032 CDS Human protein_coding chrX:150869275 chrX:150869277 nonsynonymous SNV 0.331 1 23 hm5C_associated_SNPs_52084 0 0 0 0 0 exosome 0.500231643921092 0.50023164467878 0.79513 0 hm5C_site_47436 DeepMRMD:0.79513;iRNA_m5C:0 47437 chr11 64329535 64329535 1 + G T UCEC 64329533 + 64329513 64329553 41 CAGTTGGCCGTGGCGGGCACCAGCACCATCTTCGCCCCAAC CAGTTGGCCGTGGCGGGCACCATCACCATCTTCGCCCCAAC < 41bp 0.819606338879291 0.490098545798514 0.42878622 0.048393548 prediction 0.639212677758582 Functional Loss - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64329533 chr11:64329535 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_52085 0 0 0 0 1 nucleoplasm 0.500231653611875 0.500229522778097 0 4.26166755684854e-06 hm5C_site_47437 DeepMRMD:0;iRNA_m5C:4.26166755684854e-06 47438 chr9 101611466 101611466 1 + A C rs145016561 101611462 + 101611442 101611482 41 GCTAAGCAGTGACCAGAACCCACCAAAAACTAGGCTGCATT GCTAAGCAGTGACCAGAACCCACCCAAAACTAGGCTGCATT < 41bp 0.819599711820012 0.448768702050755 0.28568685 0.097254485 prediction 0.639199423640024 Functional Loss - GALNT12 ENSG00000267026 ncRNA_exonic Human antisense chr9:101611462 chr9:101611466 . . 0 25 hm5C_associated_SNPs_52086 0 0 1 0 0 Ribosome 0.500231652461794 0.500231643921092 0 1.70814031807964e-08 hm5C_site_47438 DeepMRMD:0;iRNA_m5C:1.70814031807964e-08 47439 chr8 11629094 11629094 1 + G T COAD 11629092 + 11629072 11629112 41 CTCTGTGGCTCCAGGACACCCAGGTGAGGTAATACTCCTCT CTCTGTGGCTCCAGGACACCCATGTGAGGTAATACTCCTCT < 41bp 0.819594691339101 0.499622049072667 0.8944796 0.41838455 prediction 0.639189382678201 Functional Loss - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11629092 chr8:11629094 nonsynonymous SNV 0.957 3 23 hm5C_associated_SNPs_52087 0 0 0 0 2 Ribosome 0.500231646350026 0.500231637871011 0.7889592 1.69580294251404e-08 hm5C_site_47439 DeepMRMD:0.7889592;iRNA_m5C:1.69580294251404e-08 47440 chr1 16074127 16074127 1 + A C GBM 16074123 + 16074103 16074143 41 GTCCCAGAGTTCGGCCCCCTCTTGACCTGCCTCAGGGAGGA GTCCCAGAGTTCGGCCCCCTCTTGCCCTGCCTCAGGGAGGA < 41bp 0.819594599227878 0.455778604244198 0.5537509 0.33091873 prediction 0.639189198455757 Functional Loss - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16074123 chr1:16074127 stoploss 0.078 0 25 hm5C_associated_SNPs_52088 0 0 0 0 1 exosome 0.500231651189318 0.50023164384787 0.1075018 1.46828944558308e-08 hm5C_site_47440 DeepMRMD:0.1075018;iRNA_m5C:1.46828944558308e-08 47441 chr6 31675844 31675844 1 + G T COAD 31675841 + 31675821 31675861 41 GGGGAGGGGCTTTCTGAGCCCAGGAGCCGAAGACCAAGAAT GGGGAGGGGCTTTCTGAGCCCAGTAGCCGAAGACCAAGAAT < 41bp 0.852936291265709 0.533383762651535 0.8648584 0.31183293 prediction 0.639105057228348 Functional Loss - LY6G6F ENSG00000204424;ENSG00000250641 CDS Human other chr6:31675841 chr6:31675844 nonsynonymous SNV 0.056 2 24 hm5C_associated_SNPs_52089 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.7297168 0 hm5C_site_47441 DeepMRMD:0.7297168;iRNA_m5C:0 47442 chr5 14601175 14601175 1 + G T rs116219787 14601172 + 14601152 14601192 41 TGATGTTGGCAGTTTCATTTCTGGTGGCTGCCATCTGCTAC TGATGTTGGCAGTTTCATTTCTGTTGGCTGCCATCTGCTAC < 41bp 0.86763853351354 0.548086368097923 0.28408572 0.1974254 prediction 0.639104330831234 Functional Loss - FAM105A ENSG00000145569 CDS Human protein_coding chr5:14601172 chr5:14601175 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_52090 0 0 1 0 1 cytosol 0.500229517677902 0.500228455393093 0 2.12456961801166e-06 hm5C_site_47442 DeepMRMD:0;iRNA_m5C:2.12456961801166e-06 47443 chr22 30069437 30069437 1 + G T UCEC 30069434 + 30069414 30069454 41 GAGCAGAAGGTGCTGGAAGCCGAGGTGCTGGCACTGAAGAT GAGCAGAAGGTGCTGGAAGCCGATGTGCTGGCACTGAAGAT < 41bp 0.819548750857404 0.490815091133638 0.81243825 0.2782038 prediction 0.639097501714807 Functional Loss - NF2 ENSG00000186575 CDS Human protein_coding chr22:30069434 chr22:30069437 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_52091 0 0 1 0 1 Ribosome 0.500231643921093 0.500231643921496 0.6248765 0 hm5C_site_47443 DeepMRMD:0.6248765;iRNA_m5C:0 47444 chr11 65632076 65632076 1 + A C rs115472389 65632072 + 65632052 65632092 41 AGCACACTGCTGCAGGCTGTCACCAACACTCAGGTGAGCTG AGCACACTGCTGCAGGCTGTCACCCACACTCAGGTGAGCTG < 41bp 0.819533676387769 0.421165526285224 0.078541666 0.060485393 prediction 0.639067352775537 Functional Loss - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65632072 chr11:65632076 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_52092 0 0 1 0 1 Ribosome 0.501469331498856 0.500233900345745 0 0.00247086230622129 hm5C_site_47444 DeepMRMD:0;iRNA_m5C:0.00247086230622129 47445 chr17 38133102 38133102 1 + G T LUSC 38133099 + 38133079 38133119 41 CGATGGAACAGAACTTCCTGCTGGATAAAGAGGGTGTTTTC CGATGGAACAGAACTTCCTGCTGTATAAAGAGGGTGTTTTC < 41bp 0.862395282695705 0.542861748595115 0.3230157 0.22404683 prediction 0.63906706820118 Functional Loss - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38133099 chr17:38133102 nonsynonymous SNV 0.887 2 24 hm5C_associated_SNPs_52093 0 0 0 0 1 Nucleus 0.500231643921045 0.500231643919723 0 2.64455124465712e-12 hm5C_site_47445 DeepMRMD:0;iRNA_m5C:2.64455124465712e-12 47446 chr4 187209741 187209741 1 + G T UCEC 187209738 + 187209718 187209758 41 AACGTGGTCGAGTACGTGGACTGGATTCTGGAGAAAACTCA AACGTGGTCGAGTACGTGGACTGTATTCTGGAGAAAACTCA < 41bp 0.853175345332327 0.533644660001245 0.27410746 0.16534415 prediction 0.639061370662164 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187209738 chr4:187209741 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_52094 0 0 1 0 0 cytosol 0.500231644072135 0.500231803961697 0 0 hm5C_site_47446 DeepMRMD:0;iRNA_m5C:0 47447 chr22 30642823 30642823 1 + G T UCEC 30642820 + 30642800 30642840 41 CAGAAACAGCTATATTTAGCCGGGATCCCCAGTCCAGGAAG CAGAAACAGCTATATTTAGCCGGTATCCCCAGTCCAGGAAG < 41bp 0.838227310888472 0.518706585159635 0.86792886 0.24049771 prediction 0.639041451457675 Functional Loss - LIF ENSG00000268812 ncRNA_exonic Human antisense chr22:30642820 chr22:30642823 . . 0 24 hm5C_associated_SNPs_52095 0 0 0 2 0 exosome 0.500231643921092 0.500231643921092 0.73585772 0 hm5C_site_47447 DeepMRMD:0.73585772;iRNA_m5C:0 47448 chr17 48918083 48918083 1 + G T OV 48918080 + 48918060 48918100 41 GAGCTGACCGAGGAGCCTGACTCGGGCCGCGCCCTGGTGAC GAGCTGACCGAGGAGCCTGACTCTGGCCGCGCCCTGGTGAC < 41bp 0.819513349924983 0.443232814847697 0.2406846 0.081305414 prediction 0.639026699849965 Functional Loss - WFIKKN2 ENSG00000173714 CDS Human protein_coding chr17:48918080 chr17:48918083 synonymous SNV . 0 24 hm5C_associated_SNPs_52096 0 0 0 0 0 exosome 0.50023162222144 0.50023937006804 0 0 hm5C_site_47448 DeepMRMD:0;iRNA_m5C:0 47449 chr1 168274299 168274299 1 + A C UCEC 168274295 + 168274275 168274315 41 GGAGTGTGCACAGCAGGAAACTCCAATTACCAGTATGCCGC GGAGTGTGCACAGCAGGAAACTCCCATTACCAGTATGCCGC < 41bp 0.819511412809143 0.405659147714989 0.95368075 0.3296174 prediction 0.639022825618286 Functional Loss - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168274295 chr1:168274299 nonsynonymous SNV 0.703 1 25 hm5C_associated_SNPs_52097 0 0 0 0 1 cytosol 0.50023167108688 0.500231643921092 0.9073615 5.43315759049534e-08 hm5C_site_47449 DeepMRMD:0.9073615;iRNA_m5C:5.43315759049534e-08 47450 chr6 39836641 39836641 1 + G T LUSC 39836638 + 39836618 39836658 41 ACCGAAGTCTGGGCCGGTACCGGGATGAAGTGAATCTGAAA ACCGAAGTCTGGGCCGGTACCGGTATGAAGTGAATCTGAAA < 41bp 0.871067236848567 0.551565429223293 0.923471 0.23130709 prediction 0.639003615250548 Functional Loss - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39836638 chr6:39836641 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_52098 0 0 0 0 2 exosome 0.500231552239554 0.500231632127031 0.846942 0 hm5C_site_47450 DeepMRMD:0.846942;iRNA_m5C:0 47451 chr2 207024769 207024769 1 + G T COAD 207024766 + 207024746 207024786 41 CTCAACGATTACCTGGCGGACAAGAGCTACATCGAGGGGTG CTCAACGATTACCTGGCGGACAATAGCTACATCGAGGGGTG < 41bp 0.846099532868668 0.526621627417273 0.7339791 0.4986426 prediction 0.638955810902791 Functional Loss - EEF1B2 ENSG00000114942 CDS Human protein_coding chr2:207024766 chr2:207024769 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_52099 0 0 1 0 2 chromatin 0.500231644085954 0.500231643920922 0.4679582 3.30063976150541e-10 hm5C_site_47451 DeepMRMD:0.4679582;iRNA_m5C:3.30063976150541e-10 47452 chr12 100904588 100904588 1 + G T COAD 100904585 + 100904565 100904605 41 CAGAACAAGTGGCAGGTCCTCTGGGACAGAACCTGGAAGTG CAGAACAAGTGGCAGGTCCTCTGTGACAGAACCTGGAAGTG < 41bp 0.860055878901466 0.540582204020645 0.7014774 0.17663437 prediction 0.638947349761641 Functional Loss - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100904585 chr12:100904588 stopgain 0.956 0 24 hm5C_associated_SNPs_52100 0 0 1 0 1 cytosol 0.500231643921092 0.500231165751765 0.4029548 9.56338654045652e-07 hm5C_site_47452 DeepMRMD:0.4029548;iRNA_m5C:9.56338654045652e-07 47453 chr1 47583530 47583530 1 + G T HNSC 47583527 + 47583507 47583547 41 CAAGCTGGCTCCAGACCACTCAAGGCCTCCCCAGCCTGTTC CAAGCTGGCTCCAGACCACTCAATGCCTCCCCAGCCTGTTC < 41bp 0.819471663913652 0.449921785418445 0.8287116 0.1622816 prediction 0.638943327827305 Functional Loss - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47583527 chr1:47583530 nonsynonymous SNV 0.028 3 24 hm5C_associated_SNPs_52101 0 0 0 0 1 exosome 0.500231619083961 0.500231643921092 0.6574232 0 hm5C_site_47453 DeepMRMD:0.6574232;iRNA_m5C:0 47454 chr16 72042682 72042682 1 + A C rs3213422 72042678 + 72042658 72042698 41 AGGAGCATGGCGTGGAGACACCTGAAAGTGAGTCCCGCGAG AGGAGCATGGCGTGGAGACACCTGCAAGTGAGTCCCGCGAG < 41bp 0.819444268779662 0.461145118067076 0.19021833 0.09813237 prediction 0.638888537559323 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72042678 chr16:72042682 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_52102 2 0 1 0 1 Endoplasmic reticulum 0.500231768637654 0.500231524084869 0 4.89105569156933e-07 hm5C_site_47454 DeepMRMD:0;iRNA_m5C:4.89105569156933e-07 not specified not specified 47455 chr19 10202910 10202910 1 + G T COAD 10202907 + 10202887 10202927 41 AAGACCTGGACAACCTCATCCTGGAGGACCTGAAGGAGGAG AAGACCTGGACAACCTCATCCTGTAGGACCTGAAGGAGGAG < 41bp 0.854362368958468 0.534921609905251 0.24440035 0.096194685 prediction 0.638881518106432 Functional Loss - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10202907 chr19:10202910 stopgain 1.000 0 24 hm5C_associated_SNPs_52103 0 0 1 0 0 Ribosome 0.500231643695759 0.500231644155667 0 0 hm5C_site_47455 DeepMRMD:0;iRNA_m5C:0 47456 chr8 57358374 57358374 1 + C A UCEC 57358377 - 57358357 57358397 41 GCCCGGCCGACATCAACTTCCTGGTGAGTGTTGCGCGCGGC GCCCGGCCGACATCAACTTCCTGTTGAGTGTTGCGCGCGGC < 41bp 0.874450104812102 0.555016887011579 0.23612559 0.12670314 prediction 0.638866435601045 Functional Loss - LOC101929415;PENK ENSG00000181195;ENSG00000181195 exonic;splicing Human other chr8:57358377 chr8:57358374 nonsynonymous SNV 0.956 3 24 hm5C_associated_SNPs_52104 0 0 0 0 0 unknown 0.500348454899721 0.50023158444066 0 0.000233740918121894 hm5C_site_47456 DeepMRMD:0;iRNA_m5C:0.000233740918121894 47457 chr10 68687209 68687209 1 + G T COAD 68687206 + 68687186 68687226 41 CCATCCCTGTGCGAATATTCCAAGACTGCCGCAACCTGGAA CCATCCCTGTGCGAATATTCCAATACTGCCGCAACCTGGAA < 41bp 0.819396873556725 0.477784524007821 0.40879095 0.082071185 prediction 0.638793747113451 Functional Loss - LRRTM3 ENSG00000198739 CDS Human protein_coding chr10:68687206 chr10:68687209 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52105 0 0 0 0 0 unknown 0.500231643921092 0.500231643914696 0 1.27935440019655e-11 hm5C_site_47457 DeepMRMD:0;iRNA_m5C:1.27935440019655e-11 47458 chr11 75439123 75439123 1 + G T UCEC 75439121 + 75439101 75439141 41 GCCCAGGAGGCCCTGGATGCCAGGCCTGGATCCTTCACGCT GCCCAGGAGGCCCTGGATGCCATGCCTGGATCCTTCACGCT < 41bp 0.819393680155198 0.497493142746371 0.8868285 0.332924 prediction 0.638787360310396 Functional Loss - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75439121 chr11:75439123 nonsynonymous SNV 0.989 3 23 hm5C_associated_SNPs_52106 0 0 0 0 1 exosome 0.500231643921632 0.500231653588343 0.773657 0 hm5C_site_47458 DeepMRMD:0.773657;iRNA_m5C:0 47459 chr9 990652 990652 1 + G T LUAD 990650 + 990630 990670 41 CGTTGTCCCCAGTCCCTTGGCTGGGCCTCTGCAGCCCCCTT CGTTGTCCCCAGTCCCTTGGCTTGGCCTCTGCAGCCCCCTT < 41bp 0.828992600851602 0.509600369477989 0.12185499 0.07768515 prediction 0.638784462747227 Functional Loss - DMRT3 ENSG00000064218 CDS Human protein_coding chr9:990650 chr9:990652 nonsynonymous SNV 0.429 1 23 hm5C_associated_SNPs_52107 0 0 0 0 0 unknown 0.500231643911026 0.500231643921092 0 0 hm5C_site_47459 DeepMRMD:0;iRNA_m5C:0 47460 chr3 10206709 10206709 1 + G T SARC 10206707 + 10206687 10206727 41 TGCCGCAACATGGACGCGCTCAGCGAGTGGGACTGGATGGA TGCCGCAACATGGACGCGCTCATCGAGTGGGACTGGATGGA < 41bp 0.819409499159861 0.50002501297138 0.3900029 0.11030522 prediction 0.638768972376961 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10206707 chr3:10206709 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52108 0 0 0 0 1 Nucleus 0.500231640065178 0.500231643574703 0 0 hm5C_site_47460 DeepMRMD:0;iRNA_m5C:0 47461 chr17 56247039 56247039 1 + G T UCEC 56247036 + 56247016 56247056 41 CATGGAAACAGGGAACCTCACGTGGGTATCAGACTTTGTCT CATGGAAACAGGGAACCTCACGTTGGTATCAGACTTTGTCT < 41bp 0.859586931839421 0.540214518613617 0.8894084 0.14477757 prediction 0.638744826451607 Functional Loss - OR4D2 ENSG00000255713 CDS Human protein_coding chr17:56247036 chr17:56247039 nonsynonymous SNV 0.909 0 24 hm5C_associated_SNPs_52109 0 0 0 0 0 unknown 0.500211336720964 0.50044045434536 0.7788168 0 hm5C_site_47461 DeepMRMD:0.7788168;iRNA_m5C:0 47462 chr2 11750844 11750844 1 + G T HNSC 11750841 + 11750821 11750861 41 CGCCTGCACAGCGCGGTGATCAGGACCTTTGTTCTCGTGCA CGCCTGCACAGCGCGGTGATCAGTACCTTTGTTCTCGTGCA < 41bp 0.819367426532593 0.452149090274486 0.90603006 0.2557996 prediction 0.638734853065187 Functional Loss - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11750841 chr2:11750844 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52110 0 0 1 0 1 Nucleus 0.500231643251977 0.500231868197539 0.81206012 0 hm5C_site_47462 DeepMRMD:0.81206012;iRNA_m5C:0 47463 chr20 62641664 62641664 1 + G T SARC 62641662 + 62641642 62641682 41 GCTGTGGAGTGCTGCCCCACCAGCGTGGAGGTGAGTCTGGC GCTGTGGAGTGCTGCCCCACCATCGTGGAGGTGAGTCTGGC < 41bp 0.819343495427427 0.499722052469814 0.6775584 0.38359177 prediction 0.638686990854854 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62641662 chr20:62641664 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_52111 0 0 1 0 1 Cytosol 0.500240328854717 0.500231643940996 0.3551168 1.73698274417156e-05 hm5C_site_47463 DeepMRMD:0.3551168;iRNA_m5C:1.73698274417156e-05 47464 chr11 75431139 75431139 1 + G T LUAD 75431136 + 75431116 75431156 41 GTATCTGGACCGAGACAAGCCACGGCAGGGGGGCCGGCACA GTATCTGGACCGAGACAAGCCACTGCAGGGGGGCCGGCACA < 41bp 0.884650426163242 0.565325887097373 0.33400857 0.4879608 prediction 0.638649078131739 Functional Loss - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75431136 chr11:75431139 nonsynonymous SNV 0.227 0 24 hm5C_associated_SNPs_52112 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47464 DeepMRMD:0;iRNA_m5C:0 47465 chr12 113812778 113812778 1 + G T UCEC 113812775 + 113812755 113812795 41 CAGCACATGCTGCGTGTCATCAAGAAGTACTGGCTCCAGTT CAGCACATGCTGCGTGTCATCAATAAGTACTGGCTCCAGTT < 41bp 0.870406968152858 0.551083059649851 0.91330516 0.2038239 prediction 0.638647817006015 Functional Loss - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113812775 chr12:113812778 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52113 0 0 1 0 1 Nucleus 0.500231643920941 0.500231643888564 0.82661032 6.47528697328426e-11 hm5C_site_47465 DeepMRMD:0.82661032;iRNA_m5C:6.47528697328426e-11 47466 chr19 52272593 52272593 1 + A C LGG 52272589 + 52272569 52272609 41 TGCTATGGGCTCATTGCAGCCAAGATCCACAAAAAGGGCAT TGCTATGGGCTCATTGCAGCCAAGCTCCACAAAAAGGGCAT < 41bp 0.875259598774298 0.555944598139236 0.15354836 0.14257962 prediction 0.638630001270124 Functional Loss - FPR2 ENSG00000171049 CDS Human protein_coding chr19:52272589 chr19:52272593 nonsynonymous SNV 0.196 0 25 hm5C_associated_SNPs_52114 0 0 0 0 0 exosome 0.500231644034998 0.500241350994809 0 0 hm5C_site_47466 DeepMRMD:0;iRNA_m5C:0 47467 chr9 130869645 130869645 1 + G T COAD 130869642 + 130869622 130869662 41 AGGGGGCTGGCCCCCAACTTCATGAAGGTCATCCCAGCTGT AGGGGGCTGGCCCCCAACTTCATTAAGGTCATCCCAGCTGT < 41bp 0.819314677032387 0.462182637633089 0.33203602 0.1926868 prediction 0.638629354064774 Functional Loss - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130869642 chr9:130869645 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52115 0 0 1 0 0 Ribosome 0.500231643928555 0.500231643920855 0 1.54010137976002e-11 hm5C_site_47467 DeepMRMD:0;iRNA_m5C:1.54010137976002e-11 47468 chr16 31427891 31427891 1 + G T LUAD 31427888 + 31427868 31427908 41 GATTGTGACTGTGTGGAACGCAGGTGAGGATTCCTACGGAA GATTGTGACTGTGTGGAACGCAGTTGAGGATTCCTACGGAA < 41bp 0.819310940942981 0.436413467235691 0.73120266 0.22636235 prediction 0.638621881885962 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31427888 chr16:31427891 nonsynonymous SNV 0.108 3 24 hm5C_associated_SNPs_52116 0 0 0 0 2 nucleolus 0.500246012118676 0.500231411580958 0.46240532 2.92010754354699e-05 hm5C_site_47468 DeepMRMD:0.46240532;iRNA_m5C:2.92010754354699e-05 47469 chr16 31427890 31427890 1 + G T LUAD 31427888 + 31427868 31427908 41 GATTGTGACTGTGTGGAACGCAGGTGAGGATTCCTACGGAA GATTGTGACTGTGTGGAACGCATGTGAGGATTCCTACGGAA < 41bp 0.819310940942981 0.495166667505069 0.73120266 0.11425805 prediction 0.638621881885962 Functional Loss - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31427888 chr16:31427890 nonsynonymous SNV 0.114 3 23 hm5C_associated_SNPs_52117 0 0 0 0 2 nucleolus 0.500246012118676 0.500231643754735 0.46240532 2.87367278817285e-05 hm5C_site_47469 DeepMRMD:0.46240532;iRNA_m5C:2.87367278817285e-05 47470 chr16 844189 844189 1 + G T UCEC 844186 + 844166 844206 41 GCTGCCTCTGCGGGCGAGCACGAGAAGGTGGTCCAGGTACC GCTGCCTCTGCGGGCGAGCACGATAAGGTGGTCCAGGTACC < 41bp 0.876172347935076 0.556880009866357 0.9133844 0.8414577 prediction 0.638584676137438 Functional Loss - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:844186 chr16:844189 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_52118 0 0 1 0 1 Nucleus 0.500231643927726 0.500231643920389 0.1438534 1.46731515826559e-11 hm5C_site_47470 DeepMRMD:0.1438534;iRNA_m5C:1.46731515826559e-11 47471 chr9 95376635 95376635 1 + C A rs72754496 95376638 - 95376618 95376658 41 TCACGGACAAGCCGCAGGCTCTGGGAAGCGTGGAGGTAGTG TCACGGACAAGCCGCAGGCTCTGTGAAGCGTGGAGGTAGTG < 41bp 0.832297158673626 0.513020240221955 0.64001393 0.12341601 prediction 0.638553836903342 Functional Loss - CENPP;IPPK ENSG00000127080;ENSG00000188312 UTR3 Human other chr9:95376638 chr9:95376635 . . 0 24 hm5C_associated_SNPs_52119 0 0 0 0 0 unknown 0.500231643449409 0.500231643941975 0.28002786 0 hm5C_site_47471 DeepMRMD:0.28002786;iRNA_m5C:0 47472 chrX 26212384 26212384 1 + G T LUAD 26212381 + 26212361 26212401 41 AGAAAAGTCCAAGCACTTCCCATGATGTCTCCGTTCCTCAG AGAAAAGTCCAAGCACTTCCCATTATGTCTCCGTTCCTCAG < 41bp 0.865258532074594 0.545987643235924 0.13887864 0.09179285 prediction 0.63854177767734 Functional Loss - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26212381 chrX:26212384 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_52120 0 0 0 0 0 unknown 0.500231643880773 0.500231643921227 0 0 hm5C_site_47472 DeepMRMD:0;iRNA_m5C:0 47473 chr12 56031087 56031087 1 + A C SKCM 56031083 + 56031063 56031103 41 CCCCTACGCTATTCCACCCTCTTGAGCCCACGGGCCTGCAT CCCCTACGCTATTCCACCCTCTTGCGCCCACGGGCCTGCAT < 41bp 0.819264456176235 0.452703418928481 0.07723129 0.040623754 prediction 0.63852891235247 Functional Loss - OR10P1 ENSG00000175398 CDS Human protein_coding chr12:56031083 chr12:56031087 nonsynonymous SNV 0.058 1 25 hm5C_associated_SNPs_52121 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47473 DeepMRMD:0;iRNA_m5C:0 47474 chr17 27379978 27379978 1 + G T UCEC 27379975 + 27379955 27379995 41 TGCTGGGAATGAAAGAGAATCAAGAATTAAAGACAATCCAG TGCTGGGAATGAAAGAGAATCAATAATTAAAGACAATCCAG < 41bp 0.819255290205376 0.465852265244527 0.39606932 0.25835168 prediction 0.638510580410751 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27379975 chr17:27379978 stopgain 0.399 1 24 hm5C_associated_SNPs_52122 0 0 0 0 1 cytosol 0.500245071019218 0.50023164392504 0 2.68541883563511e-05 hm5C_site_47474 DeepMRMD:0;iRNA_m5C:2.68541883563511e-05 47475 chr10 119302787 119302787 1 + G T SARC 119302785 + 119302765 119302805 41 CTCCTCGGCGCAGCATGTTCCAGCCGGCGCCCAAGCGCTGC CTCCTCGGCGCAGCATGTTCCATCCGGCGCCCAAGCGCTGC < 41bp 0.819245005658131 0.496573738426279 0.7297556 0.29984736 prediction 0.638490011316262 Functional Loss - EMX2 ENSG00000170370 CDS Human protein_coding chr10:119302785 chr10:119302787 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_52123 0 0 0 0 0 exosome 0.500231643921095 0.500231626761289 0.4595112 3.43196115970557e-08 hm5C_site_47475 DeepMRMD:0.4595112;iRNA_m5C:3.43196115970557e-08 47476 chr2 69046400 69046400 1 + G T LUSC 69046397 + 69046377 69046417 41 GTGGCCCGAAGCTCTGTAGGCTGGGATGCCACTGAAGACCT GTGGCCCGAAGCTCTGTAGGCTGTGATGCCACTGAAGACCT < 41bp 0.872574138142407 0.553344529837009 0.30242527 0.055369705 prediction 0.638459216610798 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046397 chr2:69046400 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52124 0 0 0 0 1 chromatin 0.500231644030561 0.500229049958758 0 5.18814360739306e-06 hm5C_site_47476 DeepMRMD:0;iRNA_m5C:5.18814360739306e-06 47477 chr17 34171840 34171840 1 + G T UCEC 34171837 + 34171817 34171857 41 GAGGAGGTTACGGAGGAGATCGAGGAGGTTATGGAGGAGAT GAGGAGGTTACGGAGGAGATCGATGAGGTTATGGAGGAGAT < 41bp 0.872676965285773 0.553448977312657 0.8965238 0.4723407 prediction 0.638455975946231 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34171837 chr17:34171840 stopgain 0.999 0 24 hm5C_associated_SNPs_52125 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921093 0.7930476 0 hm5C_site_47477 DeepMRMD:0.7930476;iRNA_m5C:0 47478 chr14 29237796 29237796 1 + G T LUAD 29237793 + 29237773 29237813 41 AGCAGCACGTCCATGAGCGCCAGGGCCGCGTCCTCCTCCAC AGCAGCACGTCCATGAGCGCCAGTGCCGCGTCCTCCTCCAC < 41bp 0.87170674838497 0.552535831705509 0.92053473 0.18760926 prediction 0.638341833358922 Functional Loss - FOXG1 ENSG00000176165 CDS Human protein_coding chr14:29237793 chr14:29237796 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_52126 0 0 1 0 0 Cytosol 0.500231643932329 0.500231643921277 0.84106946 2.21043183756819e-11 hm5C_site_47478 DeepMRMD:0.84106946;iRNA_m5C:2.21043183756819e-11 47479 chr15 58009578 58009578 1 + A C rs571385079 58009574 + 58009554 58009594 41 AGATGCAGAGGAGGTCTTGCCAGCACTCCAAAATCTCTGTG AGATGCAGAGGAGGTCTTGCCAGCCCTCCAAAATCTCTGTG < 41bp 0.84887565819961 0.529706384286889 0.11614752 0.14978391 prediction 0.638338547825442 Functional Loss - GCOM1;POLR2M ENSG00000255529 UTR3 Human protein_coding chr15:58009574 chr15:58009578 . . 0 25 hm5C_associated_SNPs_52127 0 0 0 0 0 unknown 0.500231643921162 0.500231643921093 0 1.3944401189292e-13 hm5C_site_47479 DeepMRMD:0;iRNA_m5C:1.3944401189292e-13 47480 chrX 34961554 34961554 1 + G T BLCA 34961552 + 34961532 34961572 41 CGGTGTCCCGTCTCCGTCCTCAGCTTCCCAAGACTCCGGTG CGGTGTCCCGTCTCCGTCCTCATCTTCCCAAGACTCCGGTG < 41bp 0.819165780043726 0.49316320374401 0.7763953 0.2000036 prediction 0.638331560087452 Functional Loss - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961552 chrX:34961554 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_52128 0 0 0 0 0 unknown 0.500231643921486 0.500231643921092 0.5527906 7.87370169064161e-13 hm5C_site_47480 DeepMRMD:0.5527906;iRNA_m5C:7.87370169064161e-13 47481 chr22 18981843 18981843 1 + G T CESC 18981841 + 18981821 18981861 41 CTGCCCCCAACAGACATGGGCGGAGGGAACCGTCTCACCCC CTGCCCCCAACAGACATGGGCGTAGGGAACCGTCTCACCCC < 41bp 0.81914908367761 0.496727173043997 0.89635986 0.28523728 prediction 0.63829816735522 Functional Loss - DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18981841 chr22:18981843 . . 0 23 hm5C_associated_SNPs_52129 0 0 0 0 0 unknown 0.500231643921093 0.50023163446204 0.79271972 1.89181048604325e-08 hm5C_site_47481 DeepMRMD:0.79271972;iRNA_m5C:1.89181048604325e-08 47482 chr1 240070932 240070932 1 + G T LUAD 240070929 + 240070909 240070949 41 ACGGTACCACCGATGACCCTCTGGGAGGTCATACCGTCTGG ACGGTACCACCGATGACCCTCTGTGAGGTCATACCGTCTGG < 41bp 0.819132373209788 0.457907470897414 0.8075341 0.16121364 prediction 0.638264746419575 Functional Loss - CHRM3 ENSG00000133019 CDS Human protein_coding chr1:240070929 chr1:240070932 stopgain 0.991 1 24 hm5C_associated_SNPs_52130 0 0 0 0 0 exosome 0.500231638131472 0.500231643921163 0.6150682 0 hm5C_site_47482 DeepMRMD:0.6150682;iRNA_m5C:0 47483 chr9 2039784 2039784 1 + A C rs145170448 2039780 + 2039760 2039800 41 AACAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAG AACAACAGCAGCAGCAACAGCAGCCGCAGCAGCAGCAGCAG < 41bp 0.819127183849345 0.439803213856723 0.28036243 0.26787588 prediction 0.63825436769869 Functional Loss - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2039780 chr9:2039784 nonsynonymous SNV 0.712 0 25 hm5C_associated_SNPs_52131 0 0 1 0 0 Nucleus 0.500231700837748 0.500235976754746 0 0 hm5C_site_47483 DeepMRMD:0;iRNA_m5C:0 Highest math class taken 47484 chr5 54326341 54326341 1 + G T BLCA 54326338 + 54326318 54326358 41 ATGAGGCCTCCAAACAAACACTGGAGATCAAAAAATTTATA ATGAGGCCTCCAAACAAACACTGTAGATCAAAAAATTTATA < 41bp 0.82302161189371 0.50389545065017 0.10705289 0.06834403 prediction 0.63825232248708 Functional Loss - GZMK ENSG00000113088 CDS Human protein_coding chr5:54326338 chr5:54326341 stopgain 0.144 0 24 hm5C_associated_SNPs_52132 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47484 DeepMRMD:0;iRNA_m5C:0 47485 chr1 110775544 110775544 1 + G T UCEC 110775541 + 110775521 110775561 41 CTTTAAACACAGAGACCTGCCAAGACGCCCTCTCGTCCAAC CTTTAAACACAGAGACCTGCCAATACGCCCTCTCGTCCAAC < 41bp 0.81911984944556 0.470010582763299 0.047296047 0.012127638 prediction 0.638239698891121 Functional Loss - KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110775541 chr1:110775544 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52133 0 0 0 1 1 Nucleus 0.500231628742061 0.500231643921092 0 0 hm5C_site_47485 DeepMRMD:0;iRNA_m5C:0 47486 chr2 128408484 128408484 1 + G T UCEC 128408481 + 128408461 128408501 41 TGGCTCTGTGGCTTTTCATCCGAGACCACAAGTCCGGGACC TGGCTCTGTGGCTTTTCATCCGATACCACAAGTCCGGGACC < 41bp 0.871516538568726 0.552397942880208 0.9128002 0.43954685 prediction 0.638237191377035 Functional Loss - GPR17 ENSG00000144230 CDS Human protein_coding chr2:128408481 chr2:128408484 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_52134 0 0 0 0 0 Endoplasmic reticulum 0.500231643921093 0.50023164390313 0.8256004 3.59257068538454e-11 hm5C_site_47486 DeepMRMD:0.8256004;iRNA_m5C:3.59257068538454e-11 47487 chr8 125487501 125487501 1 + A C CESC 125487497 + 125487477 125487517 41 GATTCCAGCCAAAGCCGGTTCTGCATCGTGCTCCAGATCTT GATTCCAGCCAAAGCCGGTTCTGCCTCGTGCTCCAGATCTT < 41bp 0.819116645678024 0.437185157465539 0.041434467 0.020603657 prediction 0.638233291356047 Functional Loss - RNF139 ENSG00000170881 CDS Human protein_coding chr8:125487497 chr8:125487501 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_52135 0 0 1 0 1 Ribosome 0.500231643921094 0.500231643921092 0 2.88657986402541e-15 hm5C_site_47487 DeepMRMD:0;iRNA_m5C:2.88657986402541e-15 47488 chr11 5067773 5067773 1 + G T UCEC 5067770 + 5067750 5067790 41 GGAAAAATGTTTTATCACAACAAGAGCATATTTCACCCAGT GGAAAAATGTTTTATCACAACAATAGCATATTTCACCCAGT < 41bp 0.81911361468166 0.489286866661047 0.17009342 0.07923207 prediction 0.63822722936332 Functional Loss - OR52J3 ENSG00000205495 CDS Human protein_coding chr11:5067770 chr11:5067773 nonsynonymous SNV 0.032 0 24 hm5C_associated_SNPs_52136 0 0 0 0 0 unknown 0.500231644036099 0.500231646418883 0 0 hm5C_site_47488 DeepMRMD:0;iRNA_m5C:0 47489 chr10 129537212 129537212 1 + G T LUSC 129537209 + 129537189 129537229 41 TCAGTCACCTCCTCTACAGCCGGGAAGGGACCGAAGTTTGA TCAGTCACCTCCTCTACAGCCGGTAAGGGACCGAAGTTTGA < 41bp 0.865582364848719 0.54648881209075 0.6224261 0.35534614 prediction 0.638187105515938 Functional Loss - FOXI2 ENSG00000186766 CDS Human protein_coding chr10:129537209 chr10:129537212 stopgain 0.244 0 24 hm5C_associated_SNPs_52137 0 0 0 0 0 exosome 0.500231975295839 0.500231643921092 0.2448522 6.62749493951509e-07 hm5C_site_47489 DeepMRMD:0.2448522;iRNA_m5C:6.62749493951509e-07 47490 chr18 43219767 43219767 1 + G T LUSC 43219764 + 43219744 43219784 41 GTGTATGGCTGTGACAATCCCTGGACAGGCGGCGTGTTCCT GTGTATGGCTGTGACAATCCCTGTACAGGCGGCGTGTTCCT < 41bp 0.856266272589964 0.53719218846795 0.15229219 0.19701794 prediction 0.638148168244026 Functional Loss - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43219764 chr18:43219767 nonsynonymous SNV 0.896 4 24 hm5C_associated_SNPs_52138 0 0 0 0 2 Nucleus 0.500615520102113 0.500231643777883 0 0.000767752648461739 hm5C_site_47490 DeepMRMD:0;iRNA_m5C:0.000767752648461739 Obesity-related traits 47491 chr14 69967293 69967293 1 + G T UCEC 69967291 + 69967271 69967311 41 TGCCTGTTCTGGTTCTTCCTCAGGGCGTCATCCCTCTGGGG TGCCTGTTCTGGTTCTTCCTCATGGCGTCATCCCTCTGGGG < 41bp 0.824994186055597 0.505924578174463 0.9490167 0.8613 prediction 0.638139215762268 Functional Loss - PLEKHD1 ENSG00000175985 splicing Human protein_coding chr14:69967291 chr14:69967293 . 0.469 0 23 hm5C_associated_SNPs_52139 0 0 0 0 1 exosome 0.500231643921092 0.500231643921102 0.1754334 0 hm5C_site_47491 DeepMRMD:0.1754334;iRNA_m5C:0 47492 chr5 178503517 178503517 1 + G T UCEC 178503514 + 178503494 178503534 41 TGGTTGCACCTGGACTCTGCCCAGAGGGCCTTGTACCGGGA TGGTTGCACCTGGACTCTGCCCATAGGGCCTTGTACCGGGA < 41bp 0.864648941598198 0.545583414333964 0.17913309 0.041620612 prediction 0.638131054528467 Functional Loss - ZNF354C ENSG00000177932 CDS Human protein_coding chr5:178503514 chr5:178503517 nonsynonymous SNV 0.329 3 24 hm5C_associated_SNPs_52140 0 0 0 0 2 exosome 0.500231643921202 0.500231643353873 0 1.13465747908492e-09 hm5C_site_47492 DeepMRMD:0;iRNA_m5C:1.13465747908492e-09 47493 chr17 42635456 42635456 1 + G T PAAD 42635453 + 42635433 42635473 41 ACAAGTTCGGTTTTCAGTGGCCCGAGCGCCTGCGCTGCGAG ACAAGTTCGGTTTTCAGTGGCCCTAGCGCCTGCGCTGCGAG < 41bp 0.819053243606743 0.467074239428929 0.31163836 0.68809146 prediction 0.638106487213486 Functional Loss - FZD2 ENSG00000180340 CDS Human protein_coding chr17:42635453 chr17:42635456 stopgain 0.998 1 24 hm5C_associated_SNPs_52141 0 0 0 0 0 exosome 0.5002316439195 0.500231643921092 0 0 hm5C_site_47493 DeepMRMD:0;iRNA_m5C:0 47494 chr19 17394613 17394613 1 + G T STAD 17394611 + 17394591 17394631 41 GAGGCAAGCTCTACAGGTGGCAGGGAACCTGTCGGCCCTTG GAGGCAAGCTCTACAGGTGGCATGGAACCTGTCGGCCCTTG < 41bp 0.821329036373958 0.502281487732263 0.8928981 0.368254 prediction 0.638095097283391 Functional Loss - ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17394611 chr19:17394613 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_52142 0 0 0 0 1 chromatin 0.500231643912537 0.500231646823459 0.7857962 0 hm5C_site_47494 DeepMRMD:0.7857962;iRNA_m5C:0 47495 chr7 36194396 36194396 1 + G T LUSC 36194394 + 36194374 36194414 41 CATGAGCGTGCGAGGCCTCTCGGAGAAAATGGCCCTCAGCA CATGAGCGTGCGAGGCCTCTCGTAGAAAATGGCCCTCAGCA < 41bp 0.819045445453626 0.484163199475435 0.9231881 0.65682137 prediction 0.638090890907252 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36194394 chr7:36194396 stopgain 0.996 1 23 hm5C_associated_SNPs_52143 0 0 0 0 0 cytosol 0.500231634988904 0.500231700076625 0.53273346 0 hm5C_site_47495 DeepMRMD:0.53273346;iRNA_m5C:0 47496 chr9 90502053 90502053 1 + G T DLBC 90502050 + 90502030 90502070 41 CCCCTGGGCCTCCTGGGTATCTCGGGTTGAATCTGTACCCA CCCCTGGGCCTCCTGGGTATCTCTGGTTGAATCTGTACCCA < 41bp 0.872728224849228 0.553683619019091 0.3655806 0.2361697 prediction 0.638089211660274 Functional Loss - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90502050 chr9:90502053 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_52144 0 0 0 0 0 exosome 0.500231643921024 0.500231643921092 0 0 hm5C_site_47496 DeepMRMD:0;iRNA_m5C:0 47497 chrX 48382311 48382311 1 + G T BLCA 48382308 + 48382288 48382328 41 CGTGACCACATGGCTGTTGTCAGGTCGTGCTGCGGTTGTCC CGTGACCACATGGCTGTTGTCAGTTCGTGCTGCGGTTGTCC < 41bp 0.819028323339581 0.4378324840337 0.92587286 0.7811602 prediction 0.638056646679162 Functional Loss - EBP ENSG00000147155 CDS Human protein_coding chrX:48382308 chrX:48382311 nonsynonymous SNV 0.022 1 24 hm5C_associated_SNPs_52145 0 0 1 0 0 Ribosome 0.500231635672816 0.500231643917169 0.28942532 0 hm5C_site_47497 DeepMRMD:0.28942532;iRNA_m5C:0 47498 chr16 81390563 81390563 1 + G T STAD 81390561 + 81390541 81390581 41 TGCTGGCCAACTTCAAACCCCGGGGCTACTCTGAGTGCATC TGCTGGCCAACTTCAAACCCCGTGGCTACTCTGAGTGCATC < 41bp 0.832131743365603 0.513112206890708 0.8481747 0.13564995 prediction 0.638039072949791 Functional Loss - GAN ENSG00000261609 CDS Human protein_coding chr16:81390561 chr16:81390563 synonymous SNV . 0 23 hm5C_associated_SNPs_52146 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643557854 0.6963494 7.2647754478794e-10 hm5C_site_47498 DeepMRMD:0.6963494;iRNA_m5C:7.2647754478794e-10 47499 chr12 109870798 109870798 1 + G T OV 109870795 + 109870775 109870815 41 AAGTACATCGGCTACAAACCCGAGGAATACAAGTTAGGCAA AAGTACATCGGCTACAAACCCGATGAATACAAGTTAGGCAA < 41bp 0.818986625224315 0.452664497965007 0.76900643 0.11895925 prediction 0.63797325044863 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109870795 chr12:109870798 nonsynonymous SNV 0.795 1 24 hm5C_associated_SNPs_52147 0 0 0 0 2 exosome 0.500231643381809 0.500231643921247 0.53801286 0 hm5C_site_47499 DeepMRMD:0.53801286;iRNA_m5C:0 47500 chr19 549829 549829 1 + A C rs111763479 549825 + 549805 549845 41 TGGGGACCCCCTCGCTGTCTCCACAGGACCCTTCCCCTCCA TGGGGACCCCCTCGCTGTCTCCACCGGACCCTTCCCCTCCA < 41bp 0.818976137599741 0.491951775985511 0.2537196 0.079289556 prediction 0.637952275199482 Functional Loss - GZMM ENSG00000197540 UTR3 Human protein_coding chr19:549825 chr19:549829 . . 0 25 hm5C_associated_SNPs_52148 0 0 0 0 0 exosome 0.500231643864668 0.500231643921092 0 0 hm5C_site_47500 DeepMRMD:0;iRNA_m5C:0 47501 chr16 22448380 22448380 1 + T G rs373906442 22448384 - 22448364 22448404 41 TGGCGGCAGCTCCTCACGCTCACAAGGCCACTGCTAACCCG TGGCGGCAGCTCCTCACGCTCACACGGCCACTGCTAACCCG < 41bp 0.83052540578561 0.51155049713007 0.43167 0.14893535 prediction 0.63794981731108 Functional Loss - RRN3P3;SMG1P1 ENSG00000237296;ENSG00000257122 ncRNA_exonic Human other chr16:22448384 chr16:22448380 . . 0 25 hm5C_associated_SNPs_52149 0 0 0 0 1 unknown 0.500231643921092 0.500231643921028 0 1.29674049276218e-13 hm5C_site_47501 DeepMRMD:0;iRNA_m5C:1.29674049276218e-13 47502 chr16 50759404 50759404 1 + G T LUSC 50759401 + 50759381 50759421 41 TCTCTCTTCTTCTCACCAGCCTGGAGGAGAACCATCTCCAG TCTCTCTTCTTCTCACCAGCCTGTAGGAGAACCATCTCCAG < 41bp 0.818962183432367 0.483747166921344 0.23510423 0.18145731 prediction 0.637924366864735 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50759401 chr16:50759404 stopgain 1.000 1 24 hm5C_associated_SNPs_52150 0 0 0 0 2 exosome 0.500231643921095 0.500231643921092 0 5.77315972805081e-15 hm5C_site_47502 DeepMRMD:0;iRNA_m5C:5.77315972805081e-15 47503 chr14 70193856 70193856 1 + G T rs370413242 70193853 + 70193833 70193873 41 GCTCAGCCCGCTGGCGCCATCTAGTGTCGAATGAGGAGGCG GCTCAGCCCGCTGGCGCCATCTATTGTCGAATGAGGAGGCG < 41bp 0.818961778356455 0.490497656337324 0.26364058 0.25912678 prediction 0.637923556712911 Functional Loss - SUSD6;LOC100289511 ENSG00000100650 UTR5 Human protein_coding chr14:70193853 chr14:70193856 . . 0 24 hm5C_associated_SNPs_52151 0 0 0 0 1 unknown 0.500231644023618 0.500231643921097 0 2.05042205436712e-10 hm5C_site_47503 DeepMRMD:0;iRNA_m5C:2.05042205436712e-10 47504 chr17 4684113 4684113 1 + G T LUAD 4684111 + 4684091 4684131 41 GTCCGGGGATTGCAGCCGTTCGGGCAGGGGGCAAGGGCTGC GTCCGGGGATTGCAGCCGTTCGTGCAGGGGGCAAGGGCTGC < 41bp 0.818939256773327 0.492308968838095 0.8034004 0.5661969 prediction 0.637878513546654 Functional Loss - TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4684111 chr17:4684113 synonymous SNV . 0 23 hm5C_associated_SNPs_52152 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921092 0.474407 1.11022302462516e-15 hm5C_site_47504 DeepMRMD:0.474407;iRNA_m5C:1.11022302462516e-15 47505 chr10 116037774 116037774 1 + G T OV 116037772 + 116037752 116037792 41 AACGGCCTCTTCAGCACCCTCAGCAGCTCGGCCATCTGCTC AACGGCCTCTTCAGCACCCTCATCAGCTCGGCCATCTGCTC < 41bp 0.818938413832309 0.490538255016092 0.194 0.03895107 prediction 0.637876827664617 Functional Loss - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116037772 chr10:116037774 nonsynonymous SNV 0.682 1 23 hm5C_associated_SNPs_52153 0 0 0 0 1 exosome 0.500231642993122 0.50023164574516 0 0 hm5C_site_47505 DeepMRMD:0;iRNA_m5C:0 47506 chr15 41247697 41247697 1 + G T CESC 41247694 + 41247674 41247714 41 AGGAGGTCACCTTCTATCCCCAAGATGCTCCTGACCAACCA AGGAGGTCACCTTCTATCCCCAATATGCTCCTGACCAACCA < 41bp 0.818927405175613 0.459680677519922 0.2782376 0.045441806 prediction 0.637854810351227 Functional Loss - CHAC1 ENSG00000128965 CDS Human protein_coding chr15:41247694 chr15:41247697 nonsynonymous SNV 0.696 4 24 hm5C_associated_SNPs_52154 0 0 1 0 0 nucleoplasm 0.500231643941334 0.500231643921091 0 4.04860589497957e-11 hm5C_site_47506 DeepMRMD:0;iRNA_m5C:4.04860589497957e-11 47507 chr7 154863188 154863188 1 + G T LUSC 154863186 + 154863166 154863206 41 CTGAGGGCAGCGAGGAGTGCCAGGTAAGCCGCGAGCCTTCC CTGAGGGCAGCGAGGAGTGCCATGTAAGCCGCGAGCCTTCC < 41bp 0.822880874613453 0.503955954097637 0.8905953 0.50650704 prediction 0.637849841031632 Functional Loss - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154863186 chr7:154863188 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_52155 0 0 0 0 0 exosome 0.500231643921092 0.50023164347373 0.76817652 8.9472496078713e-10 hm5C_site_47507 DeepMRMD:0.76817652;iRNA_m5C:8.9472496078713e-10 47508 chr3 89480348 89480348 1 + G T LUAD 89480345 + 89480325 89480365 41 TTCAGCTAGTGGGGATGCTTCGAGGGATAGCATCTGGCATG TTCAGCTAGTGGGGATGCTTCGATGGATAGCATCTGGCATG < 41bp 0.818913523178335 0.477300865579889 0.9322833 0.21079707 prediction 0.637827046356669 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89480345 chr3:89480348 nonsynonymous SNV 0.846 4 24 hm5C_associated_SNPs_52156 0 0 0 0 1 Ribosome 0.500231644124644 0.500231643950447 0.8645666 3.48393314197892e-10 hm5C_site_47508 DeepMRMD:0.8645666;iRNA_m5C:3.48393314197892e-10 47509 chr6 74073561 74073561 1 + G T LUSC 74073558 + 74073538 74073578 41 CCAGCGGTTTCGCGAGGATGCCCGGGACCCAGTTACTAGAT CCAGCGGTTTCGCGAGGATGCCCTGGACCCAGTTACTAGAT < 41bp 0.818866138443115 0.460214927150082 0.8777546 0.40045968 prediction 0.637732276886231 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74073558 chr6:74073561 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_52157 0 0 0 0 0 unknown 0.500231643921093 0.500231643924215 0.7555092 0 hm5C_site_47509 DeepMRMD:0.7555092;iRNA_m5C:0 47510 chr17 17699027 17699027 1 + G T UCEC 17699024 + 17699004 17699044 41 GGGCTCTCCGTGCCACCTCTCAGGGGAGTCCGTCATCCTGC GGGCTCTCCGTGCCACCTCTCAGTGGAGTCCGTCATCCTGC < 41bp 0.818863543693089 0.44739076126616 0.9656592 0.87592673 prediction 0.637727087386177 Functional Loss - RAI1 ENSG00000108557 CDS Human protein_coding chr17:17699024 chr17:17699027 nonsynonymous SNV 0.616 4 24 hm5C_associated_SNPs_52158 0 0 1 0 0 chromatin 0.500231821891017 0.500231707641188 0.17946494 2.28499656973469e-07 hm5C_site_47510 DeepMRMD:0.17946494;iRNA_m5C:2.28499656973469e-07 47511 chr10 126671833 126671833 1 + G T UCEC 126671830 + 126671810 126671850 41 GTTTATGGAGTAAAATATTACAAGAGTTTCCGGGGAGAAAC GTTTATGGAGTAAAATATTACAATAGTTTCCGGGGAGAAAC < 41bp 0.845344452157048 0.526497584983294 0.36131817 0.13421103 prediction 0.637693734347508 Functional Loss - ZRANB1 ENSG00000019995 CDS Human protein_coding chr10:126671830 chr10:126671833 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52159 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47511 DeepMRMD:0;iRNA_m5C:0 47512 chr17 58506895 58506895 1 + G T UCEC 58506892 + 58506872 58506912 41 GAGCCCCCTGCCTGGGCAGCCAAGATCCCAGGACCATGTCA GAGCCCCCTGCCTGGGCAGCCAATATCCCAGGACCATGTCA < 41bp 0.818841786076631 0.453356392621407 0.1832704 0.027968556 prediction 0.637683572153262 Functional Loss - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58506892 chr17:58506895 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_52160 0 0 0 0 1 exosome 0.500231643921071 0.500231643921093 0 0 hm5C_site_47512 DeepMRMD:0;iRNA_m5C:0 47513 chr8 11872395 11872395 1 + A C rs4072134 11872391 + 11872371 11872411 41 GTCTCCTCCCTGCCTGGCCGCGGCACGTCCTCCCCGTCCTC GTCTCCTCCCTGCCTGGCCGCGGCCCGTCCTCCCCGTCCTC < 41bp 0.818819330553572 0.474378485154494 0.46674085 0.23387048 prediction 0.637638661107145 Functional Loss - DEFB134;DEFB130B ENSG00000255098 CDS Human other chr8:11872391 chr8:11872395 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_52161 0 0 0 0 0 unknown 0.500231642239466 0.500231643918875 0 0 hm5C_site_47513 DeepMRMD:0;iRNA_m5C:0 47514 chr11 4608559 4608559 1 + G T SKCM 4608556 + 4608536 4608576 41 TTCTCACGCCTCAAGTGATGCTGGGAATGAGTATGGCCATC TTCTCACGCCTCAAGTGATGCTGTGAATGAGTATGGCCATC < 41bp 0.818797502031867 0.454674361232452 0.33252114 0.08944532 prediction 0.637595004063735 Functional Loss - OR52I2 ENSG00000226288 CDS Human protein_coding chr11:4608556 chr11:4608559 stopgain 0.363 0 24 hm5C_associated_SNPs_52162 0 0 0 0 0 unknown 0.500231641489544 0.500231658907614 0 0 hm5C_site_47514 DeepMRMD:0;iRNA_m5C:0 47515 chr19 35832310 35832310 1 + G T LUAD 35832307 + 35832287 35832327 41 TCCGAGATTCACTCTGGAAACTCGGTCAGCCTCCAATGTGA TCCGAGATTCACTCTGGAAACTCTGTCAGCCTCCAATGTGA < 41bp 0.818795641088896 0.450453655684395 0.03094238 0.004072666 prediction 0.637591282177793 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35832307 chr19:35832310 synonymous SNV . 0 24 hm5C_associated_SNPs_52163 0 0 0 0 1 Endoplasmic reticulum 0.500243070983452 0.500227692713918 0 3.07565390680331e-05 hm5C_site_47515 DeepMRMD:0;iRNA_m5C:3.07565390680331e-05 47516 chr7 106508423 106508423 1 + G T LUAD 106508421 + 106508401 106508441 41 CGGGCCAGATCCACCTGGTGCAGCGGCACCCGCCCTCCGAG CGGGCCAGATCCACCTGGTGCATCGGCACCCGCCCTCCGAG < 41bp 0.846768750748696 0.527980864618518 0.85984397 0.19519702 prediction 0.637575772260356 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508421 chr7:106508423 nonsynonymous SNV 0.846 0 23 hm5C_associated_SNPs_52164 0 0 0 0 0 Cytosol 0.500231643776459 0.500231643921063 0.71968794 0 hm5C_site_47516 DeepMRMD:0.71968794;iRNA_m5C:0 47517 chr1 112002250 112002250 1 + A T SKCM 112002246 + 112002226 112002266 41 AAGCACGTGGTGCAAAGCATCTCCACACAGCAGGTACACAA AAGCACGTGGTGCAAAGCATCTCCTCACAGCAGGTACACAA < 41bp 0.823272425429695 0.504489974725888 0.9185933 0.05730775 prediction 0.637564901407613 Functional Loss - ATP5F1 ENSG00000116459 CDS Human protein_coding chr1:112002246 chr1:112002250 nonsynonymous SNV 0.506 2 25 hm5C_associated_SNPs_52165 0 0 1 2 0 Ribosome 0.500231643638313 0.500231644710373 0.8371866 0 hm5C_site_47517 DeepMRMD:0.8371866;iRNA_m5C:0 47518 chr19 13051182 13051182 1 + G T UCEC 13051179 + 13051159 13051199 41 GATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATCCTGA GATTGGGACTTCCTGCCACCCAATAAGATAAAGGATCCTGA < 41bp 0.86358230084006 0.544820049328698 0.52201724 0.2842616 prediction 0.637524503022723 Functional Loss - CALR ENSG00000179218 CDS Human protein_coding chr19:13051179 chr19:13051182 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52166 0 0 1 0 1 Ribosome 0.500231643918825 0.500231643921092 0.0440344800000001 0 hm5C_site_47518 DeepMRMD:0.0440344800000001;iRNA_m5C:0 47519 chr1 100757577 100757577 1 + G T rs573899931 100757574 + 100757554 100757594 41 GCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTAC GCTCACTGCAACCTCTGCCTCCCTGGTTCAAGCAATTCTAC < 41bp 0.848947643155776 0.530186309231562 0.13181594 0.052671403 prediction 0.637522667848427 Functional Loss - RTCA ENSG00000137996 UTR3 Human protein_coding chr1:100757574 chr1:100757577 . . 0 24 hm5C_associated_SNPs_52167 0 0 0 0 0 Ribosome 0.50023164391322 0.500232480602214 0 0 hm5C_site_47519 DeepMRMD:0;iRNA_m5C:0 47520 chrX 147013966 147013966 1 + G T UCEC 147013963 + 147013943 147013983 41 GAGTTCAAGGCAGCTTGCCTCGAGATTTCATGAACAGTTTA GAGTTCAAGGCAGCTTGCCTCGATATTTCATGAACAGTTTA < 41bp 0.818753907296306 0.490737619786246 0.83534074 0.10540342 prediction 0.637507814592613 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147013963 chrX:147013966 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_52168 0 0 1 0 0 Cytosol 0.500231643921091 0.500231643921025 0.67068148 1.31228361510694e-13 hm5C_site_47520 DeepMRMD:0.67068148;iRNA_m5C:1.31228361510694e-13 47521 chr18 61226889 61226889 1 + A C COAD 61226885 + 61226865 61226905 41 CTCTCCAAATTAGACAGGATCAAGACTGATTACACACTGAG CTCTCCAAATTAGACAGGATCAAGCCTGATTACACACTGAG < 41bp 0.818734860991666 0.438696902361347 0.3057125 0.1648981 prediction 0.637469721983333 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61226885 chr18:61226889 nonsynonymous SNV 0.055 1 25 hm5C_associated_SNPs_52169 0 0 0 0 2 exosome 0.500231643922099 0.500231643920995 0 2.20845564058436e-12 hm5C_site_47521 DeepMRMD:0;iRNA_m5C:2.20845564058436e-12 47522 chrX 46949222 46949222 1 + G T LIHC 46949219 + 46949199 46949239 41 CAGCAGTTCTTGAGCGGCACCAGGGGGCCCTGTACTCCCTC CAGCAGTTCTTGAGCGGCACCAGTGGGCCCTGTACTCCCTC < 41bp 0.880167468449486 0.561434830170177 0.90656185 0.3362761 prediction 0.637465276558619 Functional Loss - RGN ENSG00000130988 CDS Human protein_coding chrX:46949219 chrX:46949222 nonsynonymous SNV 0.694 4 24 hm5C_associated_SNPs_52170 0 0 0 0 1 Cytosol 0.500231643921268 0.500231643921076 0.8131237 3.83693077310454e-13 hm5C_site_47522 DeepMRMD:0.8131237;iRNA_m5C:3.83693077310454e-13 47523 chr19 5144306 5144306 1 + G T COAD 5144303 + 5144283 5144323 41 CTAGGCCAGGTGGTCATCACCAAGAACCGCAACGGGCTGTA CTAGGCCAGGTGGTCATCACCAATAACCGCAACGGGCTGTA < 41bp 0.873167642658511 0.554437298810646 0.8666668 0.19734594 prediction 0.63746068769573 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5144303 chr19:5144306 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52171 0 0 1 0 1 Cytosol 0.500231645967562 0.500231756630289 0.7333336 0 hm5C_site_47523 DeepMRMD:0.7333336;iRNA_m5C:0 47524 chr2 233527587 233527587 1 + G T LUSC 233527584 + 233527564 233527604 41 ATGGAGAAGCTGGGGGCCCCCCAGACCCACCTGGGCCTGAA ATGGAGAAGCTGGGGGCCCCCCATACCCACCTGGGCCTGAA < 41bp 0.818727317162264 0.453342505641464 0.293162 0.22319466 prediction 0.637454634324528 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233527584 chr2:233527587 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_52172 0 0 1 0 2 exosome 0.500231645744388 0.500231643921092 0 3.64659036300452e-09 hm5C_site_47524 DeepMRMD:0;iRNA_m5C:3.64659036300452e-09 47525 chrX 109764187 109764187 1 + G T UCEC 109764184 + 109764164 109764204 41 CGAAAGCCCTCCAGTTTCCCCTGGACACCTTGCTCCTGCTT CGAAAGCCCTCCAGTTTCCCCTGTACACCTTGCTCCTGCTT < 41bp 0.86771992984455 0.54900400316858 0.38870043 0.08834514 prediction 0.63743185335194 Functional Loss - TDGF1P3 ENSG00000225366 ncRNA_exonic Human transcribed_processed_pseudogene chrX:109764184 chrX:109764187 . . 0 24 hm5C_associated_SNPs_52173 0 0 0 0 0 unknown 0.500231643921173 0.500231643896971 0 4.84035034276076e-11 hm5C_site_47525 DeepMRMD:0;iRNA_m5C:4.84035034276076e-11 47526 chr11 19735426 19735426 1 + T G ESCA 19735430 - 19735410 19735450 41 GCTGGCTCCTGCAGCCCCTGCAGCACCTGCGATTTCAGGGG GCTGGCTCCTGCAGCCCCTGCAGCCCCTGCGATTTCAGGGG < 41bp 0.872966195044248 0.554257367790904 0.3379039 0.32679683 prediction 0.637417654506688 Functional Loss - NAV2 ENSG00000166833 CDS Human protein_coding chr11:19735430 chr11:19735426 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_52174 0 0 0 0 0 Nucleus 0.500231643922646 0.500231643921093 0 3.10662606750611e-12 hm5C_site_47526 DeepMRMD:0;iRNA_m5C:3.10662606750611e-12 47527 chr17 72921033 72921033 1 + G T LIHC 72921030 + 72921010 72921050 41 GACGCGCACGCTGGCCCCATCTGGCTCCGAGGTGCCAGGGG GACGCGCACGCTGGCCCCATCTGTCTCCGAGGTGCCAGGGG < 41bp 0.81870678163701 0.446848764754643 0.10008946 0.04273346 prediction 0.637413563274021 Functional Loss - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72921030 chr17:72921033 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52175 0 0 0 0 1 exosome 0.50023164355674 0.500231643923901 0 0 hm5C_site_47527 DeepMRMD:0;iRNA_m5C:0 47528 chr18 48255612 48255612 1 + G T LUSC 48255609 + 48255589 48255629 41 GAGGTACAGCGCGACCCGCGCGCGGGTTCGGCGCCACTGGC GAGGTACAGCGCGACCCGCGCGCTGGTTCGGCGCCACTGGC < 41bp 0.818703724650215 0.451565613280194 0.9051137 0.31345588 prediction 0.637407449300431 Functional Loss - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48255609 chr18:48255612 synonymous SNV . 0 24 hm5C_associated_SNPs_52176 0 0 0 0 1 exosome 0.500231138392585 0.500231643921128 0.8102274 0 hm5C_site_47528 DeepMRMD:0.8102274;iRNA_m5C:0 47529 chr9 84606817 84606817 1 + G T STAD 84606814 + 84606794 84606834 41 TTTGGGCCAGTAAAGGCAAACTAGAATGGCAGCACATCCAT TTTGGGCCAGTAAAGGCAAACTATAATGGCAGCACATCCAT < 41bp 0.818693450599078 0.460635249464117 0.112831205 0.25675142 prediction 0.637386901198157 Functional Loss - SPATA31D1 ENSG00000214929 CDS Human protein_coding chr9:84606814 chr9:84606817 stopgain 0.002 0 24 hm5C_associated_SNPs_52177 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47529 DeepMRMD:0;iRNA_m5C:0 47530 chr1 115398126 115398126 1 + G T UCEC 115398123 + 115398103 115398143 41 CTTTGCATTGTTCGTACCACCGAGATCAAGCAGCAGTCAGG CTTTGCATTGTTCGTACCACCGATATCAAGCAGCAGTCAGG < 41bp 0.821649442064804 0.502960537541924 0.49451068 0.04247713 prediction 0.63737780904576 Functional Loss - SYCP1 ENSG00000198765 CDS Human protein_coding chr1:115398123 chr1:115398126 nonsynonymous SNV 0.007 4 24 hm5C_associated_SNPs_52178 0 0 0 1 3 exosome 0.500231643056929 0.500231866082696 0 0 hm5C_site_47530 DeepMRMD:0;iRNA_m5C:0 47531 chr9 124522316 124522316 1 + G T LUSC 124522313 + 124522293 124522333 41 CTCAAGACGGACAATGTTTTCTGGGGCGAGCACTTCGAGTT CTCAAGACGGACAATGTTTTCTGTGGCGAGCACTTCGAGTT < 41bp 0.872900735032569 0.554216908034092 0.7460746 0.24566534 prediction 0.637367653996956 Functional Loss - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124522313 chr9:124522316 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_52179 0 0 1 0 0 Ribosome 0.50023166655824 0.500231709952024 0.4921492 0 hm5C_site_47531 DeepMRMD:0.4921492;iRNA_m5C:0 47532 chr17 72338125 72338125 1 + G T SKCM 72338123 + 72338103 72338143 41 CCTTTGACTTCACCGCCACCCAGGTGAGGGAGGGCCTGGGC CCTTTGACTTCACCGCCACCCATGTGAGGGAGGGCCTGGGC < 41bp 0.823099173143771 0.504417323666029 0.9274249 0.36406785 prediction 0.637363698955484 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72338123 chr17:72338125 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_52180 0 0 0 0 1 exosome 0.500231643921092 0.500231643920435 0.8548498 1.31561428418081e-12 hm5C_site_47532 DeepMRMD:0.8548498;iRNA_m5C:1.31561428418081e-12 47533 chr7 99971779 99971779 1 + G T COAD 99971776 + 99971756 99971796 41 CCCTTCTCCTTCTATTACCCCTGGGAGTTAGCCACAGCTCC CCCTTCTCCTTCTATTACCCCTGTGAGTTAGCCACAGCTCC < 41bp 0.818656240221799 0.440641858109675 0.16782281 0.12594706 prediction 0.637312480443598 Functional Loss - PILRA ENSG00000085514 CDS Human protein_coding chr7:99971776 chr7:99971779 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_52181 0 0 1 0 0 Nucleus 0.500231643921092 0.500231644111861 0 0 hm5C_site_47533 DeepMRMD:0;iRNA_m5C:0 47534 chr18 8798142 8798142 1 + G T UCEC 8798140 + 8798120 8798160 41 GGCTCGGGGAGCTTGGAGTCCAGGGGGGTCACCAGGCGGAT GGCTCGGGGAGCTTGGAGTCCATGGGGGTCACCAGGCGGAT < 41bp 0.838119079117477 0.519466761524864 0.9275248 0.908465 prediction 0.637304635185226 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8798140 chr18:8798142 nonsynonymous SNV 0.610 2 23 hm5C_associated_SNPs_52182 0 0 1 0 0 Nucleus 0.500231643921093 0.50023164392109 0.0381196000000001 4.44089209850063e-15 hm5C_site_47534 DeepMRMD:0.0381196000000001;iRNA_m5C:4.44089209850063e-15 47535 chr4 5803820 5803820 1 + G T LUAD 5803818 + 5803798 5803838 41 TGCAGCACCTGAAGACCCTGCAGGGTACGGGACCCCCCCTC TGCAGCACCTGAAGACCCTGCATGGTACGGGACCCCCCCTC < 41bp 0.818649077674379 0.49751871337892 0.9066853 0.40910336 prediction 0.637298155348758 Functional Loss - EVC ENSG00000072840 CDS Human protein_coding chr4:5803818 chr4:5803820 nonsynonymous SNV 0.801 0 23 hm5C_associated_SNPs_52183 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.8133706 1.11022302462516e-15 hm5C_site_47535 DeepMRMD:0.8133706;iRNA_m5C:1.11022302462516e-15 47536 chr19 110703 110703 1 + G T UCEC 110700 + 110680 110720 41 TGGTGACTGAATTCATTTTTCTGGGTCTCTCTGATTCTCAG TGGTGACTGAATTCATTTTTCTGTGTCTCTCTGATTCTCAG < 41bp 0.836630462962164 0.517988577734663 0.8914088 0.29535058 prediction 0.637283770455002 Functional Loss - OR4F17 ENSG00000176695 CDS Human protein_coding chr19:110700 chr19:110703 nonsynonymous SNV 0.016 3 24 hm5C_associated_SNPs_52184 0 0 0 0 1 unknown 0.500233920447105 0.500240717856018 0.7828176 0 hm5C_site_47536 DeepMRMD:0.7828176;iRNA_m5C:0 47537 chr11 66288771 66288771 1 + G T STAD 66288768 + 66288748 66288788 41 TTCCCAGCGTCCCCGTCTTCCTAGAGGTTTCTGGCCAGTTT TTCCCAGCGTCCCCGTCTTCCTATAGGTTTCTGGCCAGTTT < 41bp 0.818636215339292 0.458840206225727 0.5648333 0.38930348 prediction 0.637272430678585 Functional Loss - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66288768 chr11:66288771 stopgain 0.990 0 24 hm5C_associated_SNPs_52185 0 0 1 2 2 membrane 0.500230372000829 0.500231639811155 0.1296666 0 hm5C_site_47537 DeepMRMD:0.1296666;iRNA_m5C:0 47538 chr11 111899321 111899321 1 + G T UCEC 111899319 + 111899299 111899339 41 ATACTTGTTGCTGAAGGTACCAGGGATGTTCCCATCGGAGC ATACTTGTTGCTGAAGGTACCATGGATGTTCCCATCGGAGC < 41bp 0.818632750940498 0.494845482241873 0.9118326 0.032451183 prediction 0.637265501880997 Functional Loss - DLAT ENSG00000150768 CDS Human protein_coding chr11:111899319 chr11:111899321 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52186 0 0 1 0 2 Cytosol 0.500231644421474 0.500231644058044 0.8236652 7.26860349686831e-10 hm5C_site_47538 DeepMRMD:0.8236652;iRNA_m5C:7.26860349686831e-10 47539 chr6 159654772 159654772 1 + G T UCEC 159654770 + 159654750 159654790 41 AGAACCAGGACGAGGATGCCCAGGGCAGCTACGACGACGAC AGAACCAGGACGAGGATGCCCATGGCAGCTACGACGACGAC < 41bp 0.838533974717765 0.519901566862389 0.92055094 0.19114399 prediction 0.637264815710753 Functional Loss - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159654770 chr6:159654772 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_52187 0 0 0 0 0 Endoplasmic reticulum 0.500231643906432 0.500231643919924 0.84110188 0 hm5C_site_47539 DeepMRMD:0.84110188;iRNA_m5C:0 47540 chr20 42969841 42969841 1 + G T LUAD 42969838 + 42969818 42969858 41 TTGCCTTTCTTTCCCCAGGTCTGGGACAAGCGGCTGGCCAG TTGCCTTTCTTTCCCCAGGTCTGTGACAAGCGGCTGGCCAG < 41bp 0.818629945427223 0.443092854204057 0.5382611 0.27719826 prediction 0.637259890854445 Functional Loss - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42969838 chr20:42969841 nonsynonymous SNV 0.576 4 24 hm5C_associated_SNPs_52188 0 0 0 0 1 cytosol 0.500231643949152 0.500231643921095 0.0765222000000001 5.61137802890244e-11 hm5C_site_47540 DeepMRMD:0.0765222000000001;iRNA_m5C:5.61137802890244e-11 47541 chrX 69504455 69504455 1 + G T UCEC 69504452 + 69504432 69504472 41 CTTCAGCGGTTGAAATCGAACTGGAATCCTTCGAGGAGTCA CTTCAGCGGTTGAAATCGAACTGTAATCCTTCGAGGAGTCA < 41bp 0.850963709578543 0.532334905204366 0.17550862 0.0151819885 prediction 0.637257608748355 Functional Loss - RAB41 ENSG00000147127 CDS Human protein_coding chrX:69504452 chrX:69504455 stopgain 0.256 0 24 hm5C_associated_SNPs_52189 0 0 0 0 1 exosome 0.500231643178348 0.500231643921067 0 0 hm5C_site_47541 DeepMRMD:0;iRNA_m5C:0 47542 chr3 52547956 52547956 1 + G T SKCM 52547953 + 52547933 52547973 41 GGCAGGGGTTGCTGCAGCAGCTGGACTTGGTGCCTGCCTTC GGCAGGGGTTGCTGCAGCAGCTGTACTTGGTGCCTGCCTTC < 41bp 0.849001931457654 0.530397698703892 0.7883624 0.28756106 prediction 0.637208465507524 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52547953 chr3:52547956 nonsynonymous SNV 0.454 2 24 hm5C_associated_SNPs_52190 0 0 0 0 2 cytosol 0.500231643920859 0.500231643938506 0.5767248 0 hm5C_site_47542 DeepMRMD:0.5767248;iRNA_m5C:0 47543 chr1 221053586 221053586 1 + G T UCEC 221053584 + 221053564 221053604 41 ATCACCCGCAACAACAACAGCAGCAGCAACAGCCGCAGCAG ATCACCCGCAACAACAACAGCATCAGCAACAGCCGCAGCAG < 41bp 0.824896755366089 0.506295623415757 0.15825102 0.009326726 prediction 0.637202263900665 Functional Loss - HLX ENSG00000136630 CDS Human protein_coding chr1:221053584 chr1:221053586 nonsynonymous SNV 0.957 0 23 hm5C_associated_SNPs_52191 0 0 0 0 0 exosome 0.500672525227039 0.500233227164432 0 0.000878596125214459 hm5C_site_47543 DeepMRMD:0;iRNA_m5C:0.000878596125214459 47544 chr19 8495557 8495557 1 + G T LUAD 8495554 + 8495534 8495574 41 CCCTGCAGTGGCTGAAGGACCCGGGGCCGCGGACGGAGAAG CCCTGCAGTGGCTGAAGGACCCGTGGCCGCGGACGGAGAAG < 41bp 0.818593422183466 0.43940287839804 0.8972018 0.30827576 prediction 0.637186844366932 Functional Loss - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8495554 chr19:8495557 nonsynonymous SNV 0.909 3 24 hm5C_associated_SNPs_52192 0 0 0 0 1 Cytosol 0.500231641940806 0.500231712708769 0.7944036 0 hm5C_site_47544 DeepMRMD:0.7944036;iRNA_m5C:0 47545 chr3 127379518 127379518 1 + G T LAML 127379515 + 127379495 127379535 41 CACCAGCAGCAGCCAGACCCCAGGGGCCACCAAAAGCAGGC CACCAGCAGCAGCCAGACCCCAGTGGCCACCAAAAGCAGGC < 41bp 0.874172685373586 0.555585934784199 0.81419796 0.21765214 prediction 0.637173501178774 Functional Loss - PODXL2 ENSG00000114631 CDS Human protein_coding chr3:127379515 chr3:127379518 nonsynonymous SNV 0.012 1 24 hm5C_associated_SNPs_52193 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.62839592 0 hm5C_site_47545 DeepMRMD:0.62839592;iRNA_m5C:0 47546 chr10 90580214 90580214 1 + G T THYM 90580211 + 90580191 90580231 41 AAATCATCCATCTGATGCAGCAGGAGGAGACCAACCTTTCC AAATCATCCATCTGATGCAGCAGTAGGAGACCAACCTTTCC < 41bp 0.818585765580447 0.456496867305723 0.52193636 0.13216028 prediction 0.637171531160894 Functional Loss - LIPM ENSG00000173239 CDS Human protein_coding chr10:90580211 chr10:90580214 stopgain 0.127 0 24 hm5C_associated_SNPs_52194 0 0 0 0 0 exosome 0.500231644107038 0.500231643921092 0.04387272 3.71892072692503e-10 hm5C_site_47546 DeepMRMD:0.04387272;iRNA_m5C:3.71892072692503e-10 47547 chrX 152774745 152774745 1 + A C rs2980054 152774741 + 152774721 152774761 41 TGCCCACAAAACCCCAGGGACAGCAGTCTCCCCAGCCTGCC TGCCCACAAAACCCCAGGGACAGCCGTCTCCCCAGCCTGCC < 41bp 0.829773318850575 0.511190043930005 0.07152727 0.1488052 prediction 0.63716654984114 Functional Loss - BGN ENSG00000182492 UTR3 Human protein_coding chrX:152774741 chrX:152774745 . . 0 25 hm5C_associated_SNPs_52195 0 0 1 0 0 Cytosol 0.500231631363357 0.500231643921168 0 0 hm5C_site_47547 DeepMRMD:0;iRNA_m5C:0 47548 chr1 223116474 223116474 1 + G T rs2789975 223116471 + 223116451 223116491 41 AGTCACCAAGAGTGCCATCCCGAGGCTGGCCCTGCAGCACC AGTCACCAAGAGTGCCATCCCGATGCTGGCCCTGCAGCACC < 41bp 0.879300029203768 0.560721203748037 0.9359889 0.48790264 prediction 0.637157650911462 Functional Loss - DISP1 ENSG00000154309 CDS Human protein_coding chr1:223116471 chr1:223116474 nonsynonymous SNV 0.941 1 24 hm5C_associated_SNPs_52196 1 0 0 0 0 Cytosol 0.50023164392114 0.500231643956584 0.8719778 0 hm5C_site_47548 DeepMRMD:0.8719778;iRNA_m5C:0 not specified not specified 47549 chr5 169533520 169533520 1 + G T LUAD 169533517 + 169533497 169533537 41 ACTGCTTCAAGAAGGTGCCCCGCGACGAGGACGACCCGGGT ACTGCTTCAAGAAGGTGCCCCGCTACGAGGACGACCCGGGT < 41bp 0.818575722302149 0.457324914039893 0.21606594 0.1738959 prediction 0.637151444604297 Functional Loss - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169533517 chr5:169533520 nonsynonymous SNV 0.582 5 24 hm5C_associated_SNPs_52197 0 0 0 0 1 exosome 0.500209411388469 0.500231639685008 0 0 hm5C_site_47549 DeepMRMD:0;iRNA_m5C:0 47550 chr19 57956001 57956001 1 + G T STAD 57955999 + 57955979 57956019 41 GTGGGAAGGCCTTCCTTACACAGGCTCATCTGGTTGGTCAC GTGGGAAGGCCTTCCTTACACATGCTCATCTGGTTGGTCAC < 41bp 0.823193922638238 0.504632293223951 0.80592585 0.19032446 prediction 0.637123258828575 Functional Loss - ZNF749 ENSG00000186230 CDS Human protein_coding chr19:57955999 chr19:57956001 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52198 0 0 0 0 0 exosome 0.500231643921093 0.500231643921084 0.6118517 1.66533453693773e-14 hm5C_site_47550 DeepMRMD:0.6118517;iRNA_m5C:1.66533453693773e-14 47551 chr9 131847036 131847036 1 + G T LUAD 131847033 + 131847013 131847053 41 TGACCCTCATCATATTTAAGCGGGAGCTGCACACGGTGAGT TGACCCTCATCATATTTAAGCGGTAGCTGCACACGGTGAGT < 41bp 0.880738179651949 0.562180983619161 0.91197014 0.3878258 prediction 0.637114392065576 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847033 chr9:131847036 stopgain 1.000 1 24 hm5C_associated_SNPs_52199 0 0 1 0 2 Ribosome 0.500231643921092 0.50023164391773 0.82394028 6.72439881554965e-12 hm5C_site_47551 DeepMRMD:0.82394028;iRNA_m5C:6.72439881554965e-12 47552 chr13 24243121 24243121 1 + G T STAD 24243118 + 24243098 24243138 41 TACAGCAGCTACTGATTTATCTAGATATAACAACACACTGG TACAGCAGCTACTGATTTATCTATATATAACAACACACTGG < 41bp 0.848649550127677 0.53009295964877 0.16430959 0.13227469 prediction 0.637113180957815 Functional Loss - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24243118 chr13:24243121 nonsynonymous SNV 0.012 1 24 hm5C_associated_SNPs_52200 0 0 0 0 0 cytosol 0.500231643898112 0.500231643921102 0 0 hm5C_site_47552 DeepMRMD:0;iRNA_m5C:0 47553 chr7 141414042 141414042 1 + G T UCEC 141414040 + 141414020 141414060 41 CCGGTTGGTGATTTCTCCAACAGGGAAGCTTCCTTCCAGAG CCGGTTGGTGATTTCTCCAACATGGAAGCTTCCTTCCAGAG < 41bp 0.81853531695957 0.497365609370039 0.9669136 0.25755364 prediction 0.637070633919141 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141414040 chr7:141414042 nonsynonymous SNV 0.054 2 23 hm5C_associated_SNPs_52201 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.9338272 0 hm5C_site_47553 DeepMRMD:0.9338272;iRNA_m5C:0 47554 chr6 130425672 130425672 1 + G T COAD 130425669 + 130425649 130425689 41 TCCGGCTAGTCCGTCATTTCCAAGAAATAAAAGGACAGATG TCCGGCTAGTCCGTCATTTCCAATAAATAAAAGGACAGATG < 41bp 0.85820392979328 0.539675405630264 0.4083594 0.058190912 prediction 0.637057048326031 Functional Loss - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130425669 chr6:130425672 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_52202 0 0 0 0 1 nucleoplasm 0.500231644591363 0.500231643411628 0 2.35947084092913e-09 hm5C_site_47554 DeepMRMD:0;iRNA_m5C:2.35947084092913e-09 47555 chr10 17702479 17702479 1 + G T UCEC 17702476 + 17702456 17702496 41 TCTACAGAGAAAGCAACCAGCGAGATGAATACTGCTGAGGA TCTACAGAGAAAGCAACCAGCGATATGAATACTGCTGAGGA < 41bp 0.848167476335508 0.52964277758396 0.78557175 0.23929787 prediction 0.637049397503096 Functional Loss - STAM ENSG00000136738 CDS Human protein_coding chr10:17702476 chr10:17702479 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52203 0 0 1 0 2 Ribosome 0.5002316447188 0.500231613194808 0.5711435 6.30479823904295e-08 hm5C_site_47555 DeepMRMD:0.5711435;iRNA_m5C:6.30479823904295e-08 47556 chr6 27806523 27806523 1 + G T BLCA 27806520 + 27806500 27806540 41 AAGGCCCAGAAGAAGGACGGCAAGAAGCGCAAGCGCAGCCG AAGGCCCAGAAGAAGGACGGCAATAAGCGCAAGCGCAGCCG < 41bp 0.850025963707035 0.531502919090488 0.21202224 0.19709876 prediction 0.637046089233095 Functional Loss - HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806520 chr6:27806523 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52204 0 0 1 0 0 Ribosome 0.500231643921052 0.500231643921194 0 0 hm5C_site_47556 DeepMRMD:0;iRNA_m5C:0 47557 chr7 127894809 127894809 1 + G T LUAD 127894806 + 127894786 127894826 41 GTGGCAGCTGGACCTCAGCCCTGGGTGCTGAGGCCTTGAAG GTGGCAGCTGGACCTCAGCCCTGTGTGCTGAGGCCTTGAAG < 41bp 0.818521815852562 0.451355740319946 0.83169276 0.1972107 prediction 0.637043631705123 Functional Loss - LEP ENSG00000174697 CDS Human protein_coding chr7:127894806 chr7:127894809 nonsynonymous SNV 0.043 0 24 hm5C_associated_SNPs_52205 0 0 0 0 0 exosome 0.500231643921092 0.500231643926136 0.66338552 0 hm5C_site_47557 DeepMRMD:0.66338552;iRNA_m5C:0 47558 chr3 50257397 50257397 1 + G T UCEC 50257394 + 50257374 50257414 41 GCCCACGGAGAAGGAGCCTGCAAGATCCACCCCCAAAATCC GCCCACGGAGAAGGAGCCTGCAATATCCACCCCCAAAATCC < 41bp 0.81852149400022 0.478978673916088 0.31156498 0.04854536 prediction 0.63704298800044 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50257394 chr3:50257397 . 0.697 0 24 hm5C_associated_SNPs_52206 0 0 1 0 2 exosome 0.500231643921092 0.5002316439211 0 0 hm5C_site_47558 DeepMRMD:0;iRNA_m5C:0 47559 chr4 189060824 189060824 1 + G T LUAD 189060821 + 189060801 189060841 41 AGTGTGGGCACAGCTTTTGTCTGGTGTGTCTCCTCAGGAGC AGTGTGGGCACAGCTTTTGTCTGTTGTGTCTCCTCAGGAGC < 41bp 0.818518505042306 0.446681999601818 0.32372516 0.032986403 prediction 0.637037010084611 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189060821 chr4:189060824 nonsynonymous SNV 0.336 0 24 hm5C_associated_SNPs_52207 0 0 0 0 0 nucleus 0.500226956080075 0.500180740235722 0 9.24316887074283e-05 hm5C_site_47559 DeepMRMD:0;iRNA_m5C:9.24316887074283e-05 47560 chr1 197890486 197890486 1 + G T COAD 197890484 + 197890464 197890504 41 CCACCTTGGCATTTCCGCCTCGGAGATGGTCATGCGCGCCC CCACCTTGGCATTTCCGCCTCGTAGATGGTCATGCGCGCCC < 41bp 0.824497200455368 0.50599323903851 0.89424264 0.29930496 prediction 0.637007922833716 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890484 chr1:197890486 stopgain 0.988 1 23 hm5C_associated_SNPs_52208 0 0 0 0 1 exosome 0.500231643920882 0.500231643922883 0.78848528 0 hm5C_site_47560 DeepMRMD:0.78848528;iRNA_m5C:0 47561 chrX 154448504 154448504 1 + A C rs148981599 154448500 + 154448480 154448520 41 GAAACAGCCTGGGAATGAGACTGCAGATACAGTATTAAAGA GAAACAGCCTGGGAATGAGACTGCCGATACAGTATTAAAGA < 41bp 0.818491862163976 0.429195755180324 0.047929823 0.056552082 prediction 0.636983724327952 Functional Loss - VBP1 ENSG00000155959 CDS Human protein_coding chrX:154448500 chrX:154448504 synonymous SNV . 0 25 hm5C_associated_SNPs_52209 0 0 1 0 3 Ribosome 0.500231634763603 0.500231600307921 0 6.89113632823535e-08 hm5C_site_47561 DeepMRMD:0;iRNA_m5C:6.89113632823535e-08 47562 chr17 51900993 51900993 1 + G T SARC 51900991 + 51900971 51901011 41 GAGTATCGCAGGCACCTGGACAGCAGCAAGATCTCAGTCCT GAGTATCGCAGGCACCTGGACATCAGCAAGATCTCAGTCCT < 41bp 0.821549382823719 0.503077451695309 0.18458477 0.09609631 prediction 0.63694386225682 Functional Loss - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51900991 chr17:51900993 nonsynonymous SNV 0.402 0 23 hm5C_associated_SNPs_52210 0 0 0 0 0 exosome 0.500231643682293 0.500227360686552 0 8.56599148302273e-06 hm5C_site_47562 DeepMRMD:0;iRNA_m5C:8.56599148302273e-06 47563 chr1 17597649 17597649 1 + G T PAAD 17597646 + 17597626 17597666 41 CTGACCATCTGCCCACAGGCCGAGAACCGCAACGACCGCTG CTGACCATCTGCCCACAGGCCGATAACCGCAACGACCGCTG < 41bp 0.876483932477726 0.558025410000677 0.45527828 0.18722472 prediction 0.636917044954098 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17597646 chr1:17597649 nonsynonymous SNV 0.720 1 24 hm5C_associated_SNPs_52211 0 0 0 0 1 unknown 0.500231643921093 0.50023164393925 0 0 hm5C_site_47563 DeepMRMD:0;iRNA_m5C:0 47564 chr3 40574037 40574037 1 + G T LUAD 40574034 + 40574014 40574054 41 GCAGCATCAGAGATTACACACGGGAGAGAAACTCTATAAAT GCAGCATCAGAGATTACACACGGTAGAGAAACTCTATAAAT < 41bp 0.85359390554276 0.535144586864883 0.8340129 0.24701113 prediction 0.636898637355755 Functional Loss - ZNF621 ENSG00000172888 CDS Human protein_coding chr3:40574034 chr3:40574037 nonsynonymous SNV 0.009 3 24 hm5C_associated_SNPs_52212 0 0 1 0 0 Nucleus 0.500231643329325 0.500231643921093 0.6680258 0 hm5C_site_47564 DeepMRMD:0.6680258;iRNA_m5C:0 47565 chr19 33077817 33077817 1 + A C STAD 33077813 + 33077793 33077833 41 TAAAAAAGTAAGCCAACAAACAGAAAAGACAACAACAGTGA TAAAAAAGTAAGCCAACAAACAGACAAGACAACAACAGTGA < 41bp 0.818441462658726 0.452287885196444 0.8124938 0.6388075 prediction 0.636882925317451 Functional Loss - PDCD5 ENSG00000105185 CDS Human protein_coding chr19:33077813 chr19:33077817 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_52213 0 0 1 0 2 Ribosome 0.500231664366604 0.50023164397034 0.3473726 4.07925278000931e-08 hm5C_site_47565 DeepMRMD:0.3473726;iRNA_m5C:4.07925278000931e-08 47566 chr20 57896130 57896130 1 + G T SARC 57896128 + 57896108 57896148 41 AAGCTTCCGGGGCAAGAGGTCTGCGGGGCCACTTCCAGGGA AAGCTTCCGGGGCAAGAGGTCTTCGGGGCCACTTCCAGGGA < 41bp 0.826244708573932 0.507806536863492 0.51353526 0.39544404 prediction 0.63687634342088 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57896128 chr20:57896130 nonsynonymous SNV 0.165 1 23 hm5C_associated_SNPs_52214 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0.0270705200000001 2.22044604925031e-16 hm5C_site_47566 DeepMRMD:0.0270705200000001;iRNA_m5C:2.22044604925031e-16 47567 chr12 56385939 56385939 1 + G T LUAD 56385936 + 56385916 56385956 41 GGAGGTGCAGCAGGCCGAAGCCGGGGTGTGGATCTCCATGA GGAGGTGCAGCAGGCCGAAGCCGTGGTGTGGATCTCCATGA < 41bp 0.87477231401997 0.556340855711656 0.93656087 0.89600813 prediction 0.636862916616626 Functional Loss - RAB5B ENSG00000111540 CDS Human protein_coding chr12:56385936 chr12:56385939 synonymous SNV . 0 24 hm5C_associated_SNPs_52215 0 0 1 0 1 Cytosol 0.500231643922933 0.50023164391918 0.08110548 7.50621786949068e-12 hm5C_site_47567 DeepMRMD:0.08110548;iRNA_m5C:7.50621786949068e-12 47568 chr20 44437813 44437813 1 + G T UCEC 44437811 + 44437791 44437831 41 GCAGCATCACATGCGGGCAACAGGGGGCAAGATGGTAAGCA GCAGCATCACATGCGGGCAACATGGGGCAAGATGGTAAGCA < 41bp 0.818431017509658 0.495570521532265 0.92215204 0.41303068 prediction 0.636862035019315 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44437811 chr20:44437813 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_52216 0 0 1 0 2 cytosol 0.500231643921092 0.500231643908083 0.84430408 2.6019630894325e-11 hm5C_site_47568 DeepMRMD:0.84430408;iRNA_m5C:2.6019630894325e-11 47569 chr1 41481738 41481738 1 + G T rs200327092 41481735 + 41481715 41481755 41 AACAGGAAATCCCTGGGTCTCAGGTGGAGAGTGCCGTGCCG AACAGGAAATCCCTGGGTCTCAGTTGGAGAGTGCCGTGCCG < 41bp 0.850966636041318 0.532538862538795 0.93489623 0.44712 prediction 0.636855547005046 Functional Loss - SLFNL1-AS1 ENSG00000171790 UTR3 Human protein_coding chr1:41481735 chr1:41481738 . . 0 24 hm5C_associated_SNPs_52217 0 0 1 0 0 unknown 0.500231643921082 0.500231643921148 0.86979246 0 hm5C_site_47569 DeepMRMD:0.86979246;iRNA_m5C:0 47570 chr11 82876804 82876804 1 + G T UCEC 82876801 + 82876781 82876821 41 CAGGACCATCCTTACAAATTCAGGATTTAAAAGGAACTAAC CAGGACCATCCTTACAAATTCAGTATTTAAAAGGAACTAAC < 41bp 0.818424751362128 0.470747161250008 0.7351924 0.28956348 prediction 0.636849502724256 Functional Loss - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82876801 chr11:82876804 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_52218 0 0 1 0 0 Nucleus 0.500246630274505 0.500231643919806 0.4703848 2.99727093970859e-05 hm5C_site_47570 DeepMRMD:0.4703848;iRNA_m5C:2.99727093970859e-05 47571 chr11 60637240 60637240 1 + G T UCEC 60637238 + 60637218 60637258 41 GCCATGCCTTTCCCAGCCCACTGGACCCAGGGCACAGCTCT GCCATGCCTTTCCCAGCCCACTTGACCCAGGGCACAGCTCT < 41bp 0.827600408090715 0.50917811110531 0.26407114 0.12564069 prediction 0.63684459397081 Functional Loss - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60637238 chr11:60637240 synonymous SNV . 0 23 hm5C_associated_SNPs_52219 0 0 0 0 0 exosome 0.500231643922608 0.500231643921092 0 3.03068681262175e-12 hm5C_site_47571 DeepMRMD:0;iRNA_m5C:3.03068681262175e-12 47572 chr8 2048795 2048795 1 + G T BLCA 2048792 + 2048772 2048812 41 GGACTTCAGGGAGGAGGATGCTGGAGAGTGGATCACTGTAA GGACTTCAGGGAGGAGGATGCTGTAGAGTGGATCACTGTAA < 41bp 0.865671024627718 0.547248760346113 0.88934845 0.700626 prediction 0.63684452856321 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2048792 chr8:2048795 nonsynonymous SNV 0.907 0 24 hm5C_associated_SNPs_52220 0 0 0 0 1 exosome 0.500231643935532 0.500231643921092 0.3774449 2.88782331381299e-11 hm5C_site_47572 DeepMRMD:0.3774449;iRNA_m5C:2.88782331381299e-11 47573 chr19 50569594 50569594 1 + G T SARC 50569591 + 50569571 50569611 41 CTCCTGCCTCAGCTCTTCCCCTCGATCCACACGGGAGATCA CTCCTGCCTCAGCTCTTCCCCTCTATCCACACGGGAGATCA < 41bp 0.818415751614029 0.487471904130219 0.9004876 0.9239443 prediction 0.636831503228058 Functional Loss - LOC400710 ENSG00000204666 ncRNA_exonic Human sense_overlapping chr19:50569591 chr19:50569594 . . 0 24 hm5C_associated_SNPs_52221 0 0 0 0 0 unknown 0.500231643921092 0.500231643921149 0 0 hm5C_site_47573 DeepMRMD:0;iRNA_m5C:0 47574 chr19 30935460 30935460 1 + G T LUAD 30935457 + 30935437 30935477 41 ACATCACGGCCGAGTCGGCCCAGGGCCAGGGCCCCAACGGC ACATCACGGCCGAGTCGGCCCAGTGCCAGGGCCCCAACGGC < 41bp 0.884077483432229 0.565668520072789 0.8844 0.20028913 prediction 0.63681792671888 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935457 chr19:30935460 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52222 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0.7688 4.44089209850063e-16 hm5C_site_47574 DeepMRMD:0.7688;iRNA_m5C:4.44089209850063e-16 47575 chr15 42126970 42126970 1 + G T UCEC 42126967 + 42126947 42126987 41 TGCCTCTTGCTGTGCCCTACCTGGACAAACCCCCAACTCCG TGCCTCTTGCTGTGCCCTACCTGTACAAACCCCCAACTCCG < 41bp 0.87523308163548 0.556840047980558 0.32616568 0.14861843 prediction 0.636786067309844 Functional Loss - JMJD7;JMJD7-PLA2G4B ENSG00000168970;ENSG00000243708;ENSG00000243789 CDS Human other chr15:42126967 chr15:42126970 nonsynonymous SNV 0.971 2 24 hm5C_associated_SNPs_52223 0 0 0 0 0 unknown 0.500229937852356 0.500231681008201 0 0 hm5C_site_47575 DeepMRMD:0;iRNA_m5C:0 47576 chr7 158716359 158716359 1 + G T UCEC 158716356 + 158716336 158716376 41 CTGGGATTTGAGAGAAGACTCAAGGCTGCATTACTCTGTGA CTGGGATTTGAGAGAAGACTCAATGCTGCATTACTCTGTGA < 41bp 0.818369480909211 0.439065246025061 0.90323263 0.87982166 prediction 0.636738961818422 Functional Loss - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158716356 chr7:158716359 nonsynonymous SNV 0.346 3 24 hm5C_associated_SNPs_52224 0 0 1 0 2 Nucleus 0.500231643921092 0.500231695884693 0.0468219400000001 0 hm5C_site_47576 DeepMRMD:0.0468219400000001;iRNA_m5C:0 47577 chr19 52272029 52272029 1 + G T LUAD 52272026 + 52272006 52272046 41 TGCTTGGGGTCACCTTTGTCCTCGGGGTCCTGGGCAATGGG TGCTTGGGGTCACCTTTGTCCTCTGGGTCCTGGGCAATGGG < 41bp 0.874755780434581 0.55639149470362 0.43986636 0.17282233 prediction 0.636728571461922 Functional Loss - FPR2 ENSG00000171049 CDS Human protein_coding chr19:52272026 chr19:52272029 nonsynonymous SNV 0.418 3 24 hm5C_associated_SNPs_52225 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0 8.88178419700125e-16 hm5C_site_47577 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 47578 chr1 48708225 48708225 1 + G T LUSC 48708223 + 48708203 48708243 41 GGAGATATCCGAGAGGCCAGCCGGGGAGTGCCCTGCAGGAG GGAGATATCCGAGAGGCCAGCCTGGGAGTGCCCTGCAGGAG < 41bp 0.818344948641785 0.487858181013244 0.9204235 0.66846144 prediction 0.63668989728357 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48708223 chr1:48708225 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_52226 0 0 1 0 2 nucleus 0.500231643921092 0.500231643918633 0.50392412 4.91851004369437e-12 hm5C_site_47578 DeepMRMD:0.50392412;iRNA_m5C:4.91851004369437e-12 47579 chr2 200820884 200820884 1 + G T BRCA 200820881 + 200820861 200820901 41 GGATTCTCCAACCCCATCAACTGGGTTAGGACTCGAATTAA GGATTCTCCAACCCCATCAACTGTGTTAGGACTCGAATTAA < 41bp 0.8758173905563 0.557473768098853 0.9020176 0.39862606 prediction 0.636687244914894 Functional Loss - MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200820881 chr2:200820884 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52227 0 0 1 0 1 unknown 0.500231643920068 0.500231643921092 0.8040352 0 hm5C_site_47579 DeepMRMD:0.8040352;iRNA_m5C:0 47580 chr19 51274622 51274622 1 + G T LUSC 51274619 + 51274599 51274639 41 TGGGTCCATGCCAACCGGCCCAAGAGGCTGCTGCTGGTGCT TGGGTCCATGCCAACCGGCCCAATAGGCTGCTGCTGGTGCT < 41bp 0.818338578836875 0.460134889555387 0.8206304 0.13031337 prediction 0.636677157673749 Functional Loss - GPR32 ENSG00000142511 CDS Human protein_coding chr19:51274619 chr19:51274622 nonsynonymous SNV 0.695 1 24 hm5C_associated_SNPs_52228 0 0 0 0 0 unknown 0.500231643922256 0.500231643920031 0.6412608 4.44999592730255e-12 hm5C_site_47580 DeepMRMD:0.6412608;iRNA_m5C:4.44999592730255e-12 47581 chrX 1531692 1531692 1 + G T CESC 1531689 + 1531669 1531709 41 TTGTCGTCTGGCCAGTCATGCAGGATCCGGCACAGGACGTA TTGTCGTCTGGCCAGTCATGCAGTATCCGGCACAGGACGTA < 41bp 0.818314010010007 0.452377608082221 0.86939156 0.36072373 prediction 0.636628020020014 Functional Loss - ASMTL ENSG00000169093 CDS Human protein_coding chrX:1531689 chrX:1531692 synonymous SNV . 0 24 hm5C_associated_SNPs_52229 0 0 1 0 2 Cytosol 0.500231643213368 0.50023164390713 0.73878312 0 hm5C_site_47581 DeepMRMD:0.73878312;iRNA_m5C:0 47582 chr12 133277865 133277865 1 + G T UCEC 133277862 + 133277842 133277882 41 GACGCCTCAGCCTTCGCCGCCAAGATGAGGGGGGGCTTCTG GACGCCTCAGCCTTCGCCGCCAATATGAGGGGGGGCTTCTG < 41bp 0.818310612808775 0.445561228254385 0.9357406 0.9102 prediction 0.636621225617551 Functional Loss - PXMP2 ENSG00000176894;ENSG00000256632 CDS Human other chr12:133277862 chr12:133277865 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_52230 0 0 1 0 2 Ribosome 0.500231643920425 0.500231643921092 0.0510812 0 hm5C_site_47582 DeepMRMD:0.0510812;iRNA_m5C:0 47583 chr16 67006865 67006865 1 + G T PRAD 67006862 + 67006842 67006882 41 GGACAGAAGTTCAGGGAGGCCTGGATGCAGTTCTGGTCAGA GGACAGAAGTTCAGGGAGGCCTGTATGCAGTTCTGGTCAGA < 41bp 0.818277502176278 0.46305099873818 0.8931345 0.42974108 prediction 0.636555004352556 Functional Loss - CES3 ENSG00000172828 CDS Human protein_coding chr16:67006862 chr16:67006865 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_52231 0 0 0 0 0 nucleolus 0.500231640907598 0.50023164482581 0.786269 0 hm5C_site_47583 DeepMRMD:0.786269;iRNA_m5C:0 47584 chr11 124949054 124949054 1 + G T COAD 124949052 + 124949032 124949072 41 GCTCCGTTACTACCTCTCAGCTGGAATGCTGCTCAGTGGCC GCTCCGTTACTACCTCTCAGCTTGAATGCTGCTCAGTGGCC < 41bp 0.829604266667845 0.511327342280403 0.25248343 0.118009746 prediction 0.636553848774884 Functional Loss - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124949052 chr11:124949054 stopgain 0.992 1 23 hm5C_associated_SNPs_52232 0 0 0 0 2 nucleolus 0.500231643924066 0.500231643921106 0 5.91837689967178e-12 hm5C_site_47584 DeepMRMD:0;iRNA_m5C:5.91837689967178e-12 47585 chr16 2282245 2282245 1 + G T LUSC 2282243 + 2282223 2282263 41 ACGGTGAGATGGCCGAGGCCCCGGGCAGCCCCCGCCAGCAG ACGGTGAGATGGCCGAGGCCCCTGGCAGCCCCCGCCAGCAG < 41bp 0.818260757689426 0.495169875140861 0.8914573 0.3843457 prediction 0.636521515378851 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2282243 chr16:2282245 synonymous SNV . 0 23 hm5C_associated_SNPs_52233 0 0 1 0 1 chromatin 0.50023170993375 0.500231643889411 0.7829146 1.32088677329278e-07 hm5C_site_47585 DeepMRMD:0.7829146;iRNA_m5C:1.32088677329278e-07 47586 chr5 140559193 140559193 1 + G T UCEC 140559191 + 140559171 140559211 41 CGCTGGACTACGAGGCCCTGCAGGCGTTCGAGTTCCGGGTG CGCTGGACTACGAGGCCCTGCATGCGTTCGAGTTCCGGGTG < 41bp 0.827569138507673 0.509309895732502 0.8986612 0.22995907 prediction 0.636518485550343 Functional Loss - PCDHB8 ENSG00000120322 CDS Human protein_coding chr5:140559191 chr5:140559193 nonsynonymous SNV 0.885 3 23 hm5C_associated_SNPs_52234 0 0 0 0 0 exosome 0.500231643921005 0.500231629487234 0.7973224 2.88675423565365e-08 hm5C_site_47586 DeepMRMD:0.7973224;iRNA_m5C:2.88675423565365e-08 47587 chr3 195410661 195410661 1 + G T PAAD 195410659 + 195410639 195410679 41 ATGATCACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCC ATGATCACTCCAAGCCCATCCATGGGCAACAGAAGAAGCCC < 41bp 0.818258213374496 0.499049370021463 0.8807372 0.19102418 prediction 0.636516426748993 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195410659 chr3:195410661 . . 0 23 hm5C_associated_SNPs_52235 0 0 1 0 2 unknown 0.500231643919062 0.500231643921106 0.7614744 0 hm5C_site_47587 DeepMRMD:0.7614744;iRNA_m5C:0 47588 chr6 401457 401457 1 + A C SKCM 401453 + 401433 401473 41 TGCACATCTGCCTGTACTACCGGGAAATCCTCGTGAAGGAG TGCACATCTGCCTGTACTACCGGGCAATCCTCGTGAAGGAG < 41bp 0.877201757873642 0.558963150784795 0.8942206 0.8821511 prediction 0.636477214177693 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:401453 chr6:401457 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_52236 0 0 0 0 1 exosome 0.500231643921121 0.500231643921086 0.0241390000000001 7.0832228971085e-14 hm5C_site_47588 DeepMRMD:0.0241390000000001;iRNA_m5C:7.0832228971085e-14 47589 chr5 191713 191713 1 + G T UCEC 191711 + 191691 191731 41 AAGCTCTGGTGTCCCACCCCCAGGTGGCCCGGCAGAGCCTG AAGCTCTGGTGTCCCACCCCCATGTGGCCCGGCAGAGCCTG < 41bp 0.818235808103566 0.494820820718451 0.8569691 0.09235579 prediction 0.636471616207132 Functional Loss - LRRC14B ENSG00000185028 CDS Human protein_coding chr5:191711 chr5:191713 nonsynonymous SNV 0.375 0 23 hm5C_associated_SNPs_52237 0 0 0 0 0 exosome 0.500231658017531 0.500231646965046 0.7139382 2.21049698545528e-08 hm5C_site_47589 DeepMRMD:0.7139382;iRNA_m5C:2.21049698545528e-08 47590 chrX 27840379 27840379 1 + G T UCEC 27840376 + 27840356 27840396 41 ACAAGATGAGGAAGAGAGAGCCAGAGCCAGAGTTGCAGCCA ACAAGATGAGGAAGAGAGAGCCATAGCCAGAGTTGCAGCCA < 41bp 0.818196700208021 0.45885590118749 0.8919513 0.42531303 prediction 0.636393400416041 Functional Loss - MAGEB10 ENSG00000177689 CDS Human protein_coding chrX:27840376 chrX:27840379 nonsynonymous SNV 0.047 1 24 hm5C_associated_SNPs_52238 0 0 0 0 0 Nucleus 0.500229243454855 0.500431584853523 0.7839026 0 hm5C_site_47590 DeepMRMD:0.7839026;iRNA_m5C:0 47591 chr7 128434596 128434596 1 + G T COAD 128434594 + 128434574 128434614 41 TCAGGTGCTGCAGCTGGTGGCAGAACTGGAGGAGACCCGGG TCAGGTGCTGCAGCTGGTGGCATAACTGGAGGAGACCCGGG < 41bp 0.818269455176705 0.500078194240847 0.88649154 0.6412473 prediction 0.636382521871715 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128434594 chr7:128434596 stopgain 0.999 1 23 hm5C_associated_SNPs_52239 0 0 1 0 0 chromatin 0.500231643921279 0.500231643926558 0.49048848 0 hm5C_site_47591 DeepMRMD:0.49048848;iRNA_m5C:0 47592 chr14 95033402 95033402 1 + G T LUSC 95033399 + 95033379 95033419 41 TCCGGGTGCCCATGATGCTGCAGGACCAGGAGCATCACTGG TCCGGGTGCCCATGATGCTGCAGTACCAGGAGCATCACTGG < 41bp 0.818165993467566 0.446505564440151 0.28823408 0.118676186 prediction 0.636331986935132 Functional Loss - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95033399 chr14:95033402 nonsynonymous SNV 0.014 1 24 hm5C_associated_SNPs_52240 0 0 1 0 1 exosome 0.500231643921093 0.500231643921092 0 1.99840144432528e-15 hm5C_site_47592 DeepMRMD:0;iRNA_m5C:1.99840144432528e-15 47593 chr5 176301345 176301345 1 + G T HNSC 176301342 + 176301322 176301362 41 AGGGCAGTCTCTGTCCCCGGCAGGATGGGCCCAGCCCCAAG AGGGCAGTCTCTGTCCCCGGCAGTATGGGCCCAGCCCCAAG < 41bp 0.880767501797261 0.562622997099205 0.77756745 0.38165367 prediction 0.636289009396111 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176301342 chr5:176301345 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_52241 0 0 0 0 1 exosome 0.500231643921091 0.500231643921092 0.5551349 0 hm5C_site_47593 DeepMRMD:0.5551349;iRNA_m5C:0 47594 chr19 9296721 9296721 1 + G T UCEC 9296718 + 9296698 9296738 41 ATGCTGGTGAACATCCAGACCGAGAACAAAGCCATCTCCTA ATGCTGGTGAACATCCAGACCGATAACAAAGCCATCTCCTA < 41bp 0.857509629818205 0.539376088582147 0.096821606 0.060133606 prediction 0.636267082472117 Functional Loss - OR7D2 ENSG00000188000 CDS Human protein_coding chr19:9296718 chr19:9296721 nonsynonymous SNV 0.102 1 24 hm5C_associated_SNPs_52242 0 0 0 0 0 Nucleus 0.500231645074302 0.500231643921093 0 2.30641861165282e-09 hm5C_site_47594 DeepMRMD:0;iRNA_m5C:2.30641861165282e-09 47595 chr11 57947370 57947370 1 + G T LIHC 57947368 + 57947348 57947388 41 TGTGGCTGGGGCTTACGTTGCTGGTCTCATCAGTGCCTTGG TGTGGCTGGGGCTTACGTTGCTTGTCTCATCAGTGCCTTGG < 41bp 0.818784522099709 0.500665414568088 0.2271482 0.0906249 prediction 0.636238215063242 Functional Loss - OR9Q1 ENSG00000186509 CDS Human protein_coding chr11:57947368 chr11:57947370 nonsynonymous SNV 0.222 4 23 hm5C_associated_SNPs_52243 0 0 0 0 0 nucleus 0.500231643917779 0.50023164391276 0 1.00386365886607e-11 hm5C_site_47595 DeepMRMD:0;iRNA_m5C:1.00386365886607e-11 47596 chr11 55339951 55339951 1 + G T LUAD 55339948 + 55339928 55339968 41 GAGATCTTCATCCTCATCCTCACGGCTGTTGACCGCTATGT GAGATCTTCATCCTCATCCTCACTGCTGTTGACCGCTATGT < 41bp 0.818116276253197 0.452952815373272 0.21161959 0.06722611 prediction 0.636232552506394 Functional Loss - OR4C16 ENSG00000181935 CDS Human other chr11:55339948 chr11:55339951 synonymous SNV . 0 24 hm5C_associated_SNPs_52244 0 0 0 0 0 unknown 0.500231652946372 0.500231762335021 0 0 hm5C_site_47596 DeepMRMD:0;iRNA_m5C:0 47597 chr4 71654646 71654646 1 + G T STAD 71654643 + 71654623 71654663 41 TGGTATCTCTTCGGCAGCAGCTGGATGACCTCAGAGCTCTC TGGTATCTCTTCGGCAGCAGCTGTATGACCTCAGAGCTCTC < 41bp 0.863351986378368 0.545245588979426 0.5398199 0.3621062 prediction 0.636212794797884 Functional Loss - RUFY3 ENSG00000018189 CDS Human protein_coding chr4:71654643 chr4:71654646 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_52245 0 0 1 0 1 Cytosol 0.500231614314664 0.500231632274987 0.0796398 0 hm5C_site_47597 DeepMRMD:0.0796398;iRNA_m5C:0 47598 chr12 126944755 126944755 1 + A C rs148421122 126944751 + 126944731 126944771 41 GGAGAAGGGCACAAAGTGGACAGCAGAAGCAGGAGCTGTCA GGAGAAGGGCACAAAGTGGACAGCCGAAGCAGGAGCTGTCA < 41bp 0.81810504825909 0.48123036695121 0.46996087 0.43726778 prediction 0.636210096518181 Functional Loss - LINC02347 ENSG00000214043 ncRNA_intronic Human lincRNA chr12:126944751 chr12:126944755 . . 0 25 hm5C_associated_SNPs_52246 0 0 0 0 0 unknown 0.500231643046552 0.500231643922221 0 0 hm5C_site_47598 DeepMRMD:0;iRNA_m5C:0 47599 chr13 113825987 113825987 1 + G T BLCA 113825984 + 113825964 113826004 41 CACATGCGGTATGACGCGGACGCGGGGGAGAATGACCTGTC CACATGCGGTATGACGCGGACGCTGGGGAGAATGACCTGTC < 41bp 0.873227527454264 0.555135828439503 0.72949183 0.20925236 prediction 0.636183398029522 Functional Loss - PROZ ENSG00000126231 CDS Human protein_coding chr13:113825984 chr13:113825987 synonymous SNV . 0 24 hm5C_associated_SNPs_52247 0 0 0 0 1 exosome 0.500235823973363 0.500401617607156 0.45898366 0 hm5C_site_47599 DeepMRMD:0.45898366;iRNA_m5C:0 47600 chr7 99047957 99047957 1 + G T KIRC 99047954 + 99047934 99047974 41 ATCGACCCCGAGTCCAAGATCAAGGACTGTCCTTGGTATGA ATCGACCCCGAGTCCAAGATCAATGACTGTCCTTGGTATGA < 41bp 0.818080314828433 0.436090953502237 0.8840579 0.1545547 prediction 0.636160629656867 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99047954 chr7:99047957 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52248 0 0 1 0 2 chromatin 0.500231647873069 0.500231625587225 0.7681158 4.45716878960667e-08 hm5C_site_47600 DeepMRMD:0.7681158;iRNA_m5C:4.45716878960667e-08 47601 chr5 5057744 5057744 1 + A C rs145747250 5057740 + 5057720 5057760 41 GCATCCCAGTGGACTCTGCGCTGCATCCCCAGAGTACAGCG GCATCCCAGTGGACTCTGCGCTGCCTCCCCAGAGTACAGCG < 41bp 0.855921706701547 0.537847868067402 0.19589746 0.22229934 prediction 0.636147677268289 Functional Loss - LINC01020 ENSG00000215231 ncRNA_exonic Human lincRNA chr5:5057740 chr5:5057744 . . 0 25 hm5C_associated_SNPs_52249 0 0 0 0 1 unknown 0.500231643958805 0.500244522144548 0 0 hm5C_site_47601 DeepMRMD:0;iRNA_m5C:0 47602 chrX 13727293 13727293 1 + G T THYM 13727291 + 13727271 13727311 41 GAAGAAGCCCAAGCTTGGTGCAGGGACAACGGCGACTATCC GAAGAAGCCCAAGCTTGGTGCATGGACAACGGCGACTATCC < 41bp 0.819325133795474 0.501257888309824 0.8958787 0.10446313 prediction 0.636134490971301 Functional Loss - RAB9A ENSG00000123595 CDS Human protein_coding chrX:13727291 chrX:13727293 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_52250 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.7917574 0 hm5C_site_47602 DeepMRMD:0.7917574;iRNA_m5C:0 47603 chr7 75933385 75933385 1 + G T UCEC 75933382 + 75933362 75933402 41 ACCGTGGAGGCCCCCATGCCCAAGCTAGCCACGCAGTCCAA ACCGTGGAGGCCCCCATGCCCAATCTAGCCACGCAGTCCAA < 41bp 0.818061425055463 0.451622179422567 0.30051684 0.024101526 prediction 0.636122850110926 Functional Loss - HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933382 chr7:75933385 nonsynonymous SNV 0.139 2 24 hm5C_associated_SNPs_52251 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643947891 0 0 hm5C_site_47603 DeepMRMD:0;iRNA_m5C:0 47604 chr5 140792935 140792935 1 + G T LUAD 140792933 + 140792913 140792953 41 TCTGGCGCCCCGGGAGCTGGCGGAGCGCGGAGTCCGCATAG TCTGGCGCCCCGGGAGCTGGCGTAGCGCGGAGTCCGCATAG < 41bp 0.8180532321869 0.49032297518044 0.94116074 0.8911575 prediction 0.636106464373799 Functional Loss - PCDHGA10 ENSG00000253846 CDS Human protein_coding chr5:140792933 chr5:140792935 stopgain 0.969 0 23 hm5C_associated_SNPs_52252 0 0 0 0 0 exosome 0.500231643921092 0.500231611832617 0.10000648 6.41769504206025e-08 hm5C_site_47604 DeepMRMD:0.10000648;iRNA_m5C:6.41769504206025e-08 47605 chr4 71024217 71024217 1 + G T KIRC 71024214 + 71024194 71024234 41 TCCCTGGATTCTAACTTCTCCTGGATTCCCCTATGTCTATC TCCCTGGATTCTAACTTCTCCTGTATTCCCCTATGTCTATC < 41bp 0.841983068277641 0.523935708650446 0.1421901 0.012918234 prediction 0.636094719254389 Functional Loss - PRR27 ENSG00000187533 CDS Human protein_coding chr4:71024214 chr4:71024217 nonsynonymous SNV 0.002 2 24 hm5C_associated_SNPs_52253 0 0 0 0 0 unknown 0.500231643921039 0.50023164392112 0 0 hm5C_site_47605 DeepMRMD:0;iRNA_m5C:0 47606 chr18 76757179 76757179 1 + G T OV 76757176 + 76757156 76757196 41 GGGGCAGCGCCCTCCCCCCTCTGGGCAGCATGGCCAGTGGG GGGGCAGCGCCCTCCCCCCTCTGTGCAGCATGGCCAGTGGG < 41bp 0.81803226863192 0.441314273386614 0.38404226 0.086197585 prediction 0.636064537263841 Functional Loss - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76757176 chr18:76757179 nonsynonymous SNV 0.028 2 24 hm5C_associated_SNPs_52254 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47606 DeepMRMD:0;iRNA_m5C:0 47607 chrX 11793118 11793118 1 + G T LUAD 11793115 + 11793095 11793135 41 CCAGGTTTTTAGCAGAATACCACGATGACTTCTTCCCAGAG CCAGGTTTTTAGCAGAATACCACTATGACTTCTTCCCAGAG < 41bp 0.818006637764936 0.468203303887454 0.3361308 0.2732193 prediction 0.636013275529873 Functional Loss - MSL3 ENSG00000005302 CDS Human protein_coding chrX:11793115 chrX:11793118 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_52255 0 0 1 0 1 Cytosol 0.500241306852047 0.500231435998075 0 1.97417079446094e-05 hm5C_site_47607 DeepMRMD:0;iRNA_m5C:1.97417079446094e-05 47608 chr7 108213597 108213597 1 + G T UCEC 108213594 + 108213574 108213614 41 GTAGACAAAGGCATCATTTCCAAGAATTTTCTTTTGGAGGT GTAGACAAAGGCATCATTTCCAATAATTTTCTTTTGGAGGT < 41bp 0.831842059374347 0.513878257861924 0.45439452 0.22055405 prediction 0.635927603024846 Functional Loss - DNAJB9 ENSG00000128590 CDS Human protein_coding chr7:108213594 chr7:108213597 stopgain 0.998 0 24 hm5C_associated_SNPs_52256 0 0 1 0 0 Endoplasmic reticulum 0.500231643918307 0.500231643926376 0 0 hm5C_site_47608 DeepMRMD:0;iRNA_m5C:0 47609 chr1 156737938 156737938 1 + A C STAD 156737934 + 156737914 156737954 41 CCCTGGCCTCAATCTGCCCCCTCCAATTGGCGGTGCCGGTC CCCTGGCCTCAATCTGCCCCCTCCCATTGGCGGTGCCGGTC < 41bp 0.817948260428663 0.418078700227086 0.9527117 0.018100798 prediction 0.635896520857326 Functional Loss - PRCC ENSG00000143294 CDS Human protein_coding chr1:156737934 chr1:156737938 synonymous SNV . 0 25 hm5C_associated_SNPs_52257 0 0 1 0 1 Ribosome 0.500231643921166 0.500231643921092 0.9054234 1.46771483855446e-13 hm5C_site_47609 DeepMRMD:0.9054234;iRNA_m5C:1.46771483855446e-13 47610 chr19 17892074 17892074 1 + G T UCEC 17892071 + 17892051 17892091 41 GCACCTGCTGACCCCACAGCCAGGGAGGGCCTGGCAGCCCC GCACCTGCTGACCCCACAGCCAGTGAGGGCCTGGCAGCCCC < 41bp 0.886456338891758 0.568523842502676 0.92941105 0.86502934 prediction 0.635864992778164 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17892071 chr19:17892074 nonsynonymous SNV 0.162 0 24 hm5C_associated_SNPs_52258 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921091 0.12876342 1.99840144432528e-15 hm5C_site_47610 DeepMRMD:0.12876342;iRNA_m5C:1.99840144432528e-15 47611 chr8 125499514 125499514 1 + G T UCS 125499511 + 125499491 125499531 41 AAATAAAAGGGAGCCGCTTACAAGAAATAAATGATGTATGT AAATAAAAGGGAGCCGCTTACAATAAATAAATGATGTATGT < 41bp 0.834590089889403 0.516658844389479 0.8801303 0.13679612 prediction 0.63586249099985 Functional Loss - RNF139 ENSG00000170881 CDS Human protein_coding chr8:125499511 chr8:125499514 stopgain 0.980 1 24 hm5C_associated_SNPs_52259 0 0 1 0 0 Ribosome 0.500231643924075 0.500231643921092 0.7602606 5.96434013289127e-12 hm5C_site_47611 DeepMRMD:0.7602606;iRNA_m5C:5.96434013289127e-12 47612 chr17 72351389 72351389 1 + G T STAD 72351386 + 72351366 72351406 41 GTGGTTCTCGACGGGCTACCCGTGGGCCCCGCCTGCCCCAC GTGGTTCTCGACGGGCTACCCGTTGGCCCCGCCTGCCCCAC < 41bp 0.876904084671266 0.558986034587234 0.63050365 0.10181859 prediction 0.635836100168063 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72351386 chr17:72351389 nonsynonymous SNV 0.495 2 24 hm5C_associated_SNPs_52260 0 0 0 0 1 exosome 0.500231640395839 0.500231643920966 0.2610073 0 hm5C_site_47612 DeepMRMD:0.2610073;iRNA_m5C:0 47613 chr16 31368598 31368598 1 + G T LUSC 31368595 + 31368575 31368615 41 CCTGCGGCCCCACCGTGCACCACGAGTGCGGGAGGAACATG CCTGCGGCCCCACCGTGCACCACTAGTGCGGGAGGAACATG < 41bp 0.872826678653206 0.554933166085963 0.053550184 0.0152902305 prediction 0.635787025134485 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31368595 chr16:31368598 stopgain 0.005 0 24 hm5C_associated_SNPs_52261 0 0 0 0 1 Nucleus 0.500230588615002 0.500231643921176 0 0 hm5C_site_47613 DeepMRMD:0;iRNA_m5C:0 47614 chr1 155110166 155110166 1 + A C rs541358920 155110162 + 155110142 155110182 41 GGCCTCTTCTGCAGTGTCTTCACCATCAGCATGTACCTCTC GGCCTCTTCTGCAGTGTCTTCACCCTCAGCATGTACCTCTC < 41bp 0.896159995050664 0.578271125767348 0.11194849 0.13513279 prediction 0.63577773856663 Functional Loss - SLC50A1 ENSG00000169241 CDS Human protein_coding chr1:155110162 chr1:155110166 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_52262 0 0 1 1 1 chromatin 0.500231643909999 0.500231643921098 0 0 hm5C_site_47614 DeepMRMD:0;iRNA_m5C:0 47615 chr1 37941184 37941184 1 + G T UCEC 37941182 + 37941162 37941202 41 TTGAGGACAGCCACAGCCGTCAGGGCACCCCAAGGCCGGGT TTGAGGACAGCCACAGCCGTCATGGCACCCCAAGGCCGGGT < 41bp 0.817858708017997 0.488485273619408 0.8967074 0.28016728 prediction 0.635717416035994 Functional Loss - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37941182 chr1:37941184 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_52263 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.7934148 0 hm5C_site_47615 DeepMRMD:0.7934148;iRNA_m5C:0 47616 chr19 12739849 12739849 1 + G T LGG 12739846 + 12739826 12739866 41 CCTTATGAATGTAAGGAATGCGGGAAGGCCTTTATTTATCC CCTTATGAATGTAAGGAATGCGGTAAGGCCTTTATTTATCC < 41bp 0.817832357243697 0.46894079777434 0.384817 0.11289126 prediction 0.635664714487395 Functional Loss - ZNF791 ENSG00000173875 CDS Human protein_coding chr19:12739846 chr19:12739849 synonymous SNV . 0 24 hm5C_associated_SNPs_52264 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_47616 DeepMRMD:0;iRNA_m5C:0 47617 chr19 57840085 57840085 1 + G T LUAD 57840083 + 57840063 57840103 41 GCAGCATCAACGGATTCACACTGGGGAGAAGCCTTATGAAT GCAGCATCAACGGATTCACACTTGGGAGAAGCCTTATGAAT < 41bp 0.817816968015845 0.493095747746007 0.089652866 0.020779878 prediction 0.63563393603169 Functional Loss - ZNF543 ENSG00000178229 CDS Human protein_coding chr19:57840083 chr19:57840085 nonsynonymous SNV 0.213 3 23 hm5C_associated_SNPs_52265 0 0 1 0 0 Nucleus 0.500231496325162 0.500231635300955 0 0 hm5C_site_47617 DeepMRMD:0;iRNA_m5C:0 47618 chr9 141069152 141069152 1 + G T UCEC 141069149 + 141069129 141069169 41 GCACTCCGTGCATATGGAAACAAGAGTCTTCCCCTCCCACA GCACTCCGTGCATATGGAAACAATAGTCTTCCCCTCCCACA < 41bp 0.842231817089265 0.524424109936215 0.31125778 0.04685083 prediction 0.6356154143061 Functional Loss - TUBBP5 ENSG00000159247 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141069149 chr9:141069152 . . 0 24 hm5C_associated_SNPs_52266 0 0 0 0 0 unknown 0.500230231431732 0.500231644066952 0 0 hm5C_site_47618 DeepMRMD:0;iRNA_m5C:0 47619 chr19 49090614 49090614 1 + G T BLCA 49090611 + 49090591 49090631 41 TTGTGGGTGCCTTCAGCCTCCCGGACCAGTACAGCCCCCGC TTGTGGGTGCCTTCAGCCTCCCGTACCAGTACAGCCCCCGC < 41bp 0.817801840376109 0.446857428120697 0.2577725 0.049815148 prediction 0.635603680752218 Functional Loss - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49090611 chr19:49090614 nonsynonymous SNV 0.837 3 24 hm5C_associated_SNPs_52267 0 0 0 0 1 exosome 0.500231643921093 0.500231643942172 0 0 hm5C_site_47619 DeepMRMD:0;iRNA_m5C:0 47620 chr2 176988812 176988812 1 + A C rs146173388 176988808 + 176988788 176988828 41 GCTACGAGGTGGCCAGGATTCTCAACCTAACAGAGAGACAG GCTACGAGGTGGCCAGGATTCTCACCCTAACAGAGAGACAG < 41bp 0.817797986359326 0.431212692891149 0.3734371 0.18615016 prediction 0.635595972718652 Functional Loss - HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176988808 chr2:176988812 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_52268 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_47620 DeepMRMD:0;iRNA_m5C:0 47621 chr18 77107832 77107832 1 + G T LUSC 77107829 + 77107809 77107849 41 ACGCAGTTCCGGCACATAGGCAGGCTGCTCATGGTGCACGG ACGCAGTTCCGGCACATAGGCAGTCTGCTCATGGTGCACGG < 41bp 0.817795769267861 0.46501083397765 0.8973993 0.25649905 prediction 0.635591538535722 Functional Loss - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77107829 chr18:77107832 nonsynonymous SNV 0.633 4 24 hm5C_associated_SNPs_52269 0 0 1 0 1 Endoplasmic reticulum 0.500231643923115 0.500231643921117 0.7947986 3.99458244260131e-12 hm5C_site_47621 DeepMRMD:0.7947986;iRNA_m5C:3.99458244260131e-12 47622 chr3 37670748 37670748 1 + G T GBM 37670745 + 37670725 37670765 41 CAGCCTCAGTGAGCATGTGACTGGAGAGGAGGAGAGGGAAC CAGCCTCAGTGAGCATGTGACTGTAGAGGAGGAGAGGGAAC < 41bp 0.855744742021406 0.537952066191177 0.32346928 0.2558898 prediction 0.635585351660459 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37670745 chr3:37670748 nonsynonymous SNV 0.641 0 24 hm5C_associated_SNPs_52270 0 0 0 0 2 Nucleus 0.500231647524621 0.500231651055524 0 0 hm5C_site_47622 DeepMRMD:0;iRNA_m5C:0 47623 chr19 56113749 56113749 1 + G T rs553742743 56113746 + 56113726 56113766 41 ACCTCCTCCTGATCGATGATCAGGGTGTGCCCTATACGGTC ACCTCCTCCTGATCGATGATCAGTGTGTGCCCTATACGGTC < 41bp 0.877643567201626 0.559864084458532 0.91766405 0.6024282 prediction 0.635558965486188 Functional Loss - ZNF524 ENSG00000171443 CDS Human protein_coding chr19:56113746 chr19:56113749 nonsynonymous SNV 0.910 3 24 hm5C_associated_SNPs_52271 0 0 0 0 0 chromatin 0.500231643921153 0.500231650808597 0.6304717 0 hm5C_site_47623 DeepMRMD:0.6304717;iRNA_m5C:0 47624 chr6 28327678 28327678 1 + G T LUAD 28327675 + 28327655 28327695 41 CTGCCGGGGAATCTGCAGAGCTGGGTGCGGGAGCAGCATCC CTGCCGGGGAATCTGCAGAGCTGTGTGCGGGAGCAGCATCC < 41bp 0.880686182831858 0.562920447353482 0.5988024 0.14659321 prediction 0.635531470956752 Functional Loss - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28327675 chr6:28327678 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_52272 0 0 0 0 1 exosome 0.500231644001839 0.500231554111856 0.1976048 1.7977996646934e-07 hm5C_site_47624 DeepMRMD:0.1976048;iRNA_m5C:1.7977996646934e-07 47625 chr6 167708186 167708186 1 + G T STAD 167708184 + 167708164 167708204 41 GTGGGCAACTTCTTCGCCAGCTGGTACGCAGCCACCACCCC GTGGGCAACTTCTTCGCCAGCTTGTACGCAGCCACCACCCC < 41bp 0.830421349078972 0.51266105186553 0.12115088 0.14763123 prediction 0.635520594426884 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708184 chr6:167708186 nonsynonymous SNV 0.926 2 23 hm5C_associated_SNPs_52273 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_47625 DeepMRMD:0;iRNA_m5C:0 47626 chrX 89177112 89177112 1 + G T HNSC 89177110 + 89177090 89177130 41 GGCCGCTGCGGACGGCCCGGCTGAGACCCAAAGCCCGGTGG GGCCGCTGCGGACGGCCCGGCTTAGACCCAAAGCCCGGTGG < 41bp 0.817755815119037 0.497971328067111 0.20887259 0.081537515 prediction 0.635511630238074 Functional Loss - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177110 chrX:89177112 stopgain 0.003 0 23 hm5C_associated_SNPs_52274 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47626 DeepMRMD:0;iRNA_m5C:0 47627 chr1 202843150 202843150 1 + G T LUAD 202843147 + 202843127 202843167 41 CGCTGTTCCAGGCCTCCTTCCTGGGTATGGAATCTTGTGGC CGCTGTTCCAGGCCTCCTTCCTGTGTATGGAATCTTGTGGC < 41bp 0.817744606312865 0.462154615818536 0.84007275 0.14023635 prediction 0.635489212625729 Functional Loss - LOC148709 ENSG00000234996;ENSG00000243113 ncRNA_exonic Human other chr1:202843147 chr1:202843150 . . 0 24 hm5C_associated_SNPs_52275 0 0 0 0 0 unknown 0.500231643458099 0.500233700863066 0.6801455 0 hm5C_site_47627 DeepMRMD:0.6801455;iRNA_m5C:0 47628 chrX 117960152 117960152 1 + G T LUAD 117960149 + 117960129 117960169 41 ATTGATTCCCCCCACAATTCCAGGGCTCAGTTTCCTTCCAC ATTGATTCCCCCCACAATTCCAGTGCTCAGTTTCCTTCCAC < 41bp 0.887015571204485 0.569279953295298 0.9278514 0.47217283 prediction 0.635471235818375 Functional Loss - ZCCHC12 ENSG00000174460 CDS Human protein_coding chrX:117960149 chrX:117960152 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_52276 0 0 1 0 0 exosome 0.500231643921072 0.50023164384238 0.8557028 1.57383217569418e-10 hm5C_site_47628 DeepMRMD:0.8557028;iRNA_m5C:1.57383217569418e-10 47629 chr4 187192858 187192858 1 + A C LUAD 187192854 + 187192834 187192874 41 GCCAAGTACTGCCAGGTAGTCTGCACTTACCACCCAAGATG GCCAAGTACTGCCAGGTAGTCTGCCCTTACCACCCAAGATG < 41bp 0.898091570845114 0.58036370712619 0.06137967 0.08077809 prediction 0.635455727437848 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187192854 chr4:187192858 nonsynonymous SNV 0.125 5 25 hm5C_associated_SNPs_52277 1 0 0 0 2 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_47629 DeepMRMD:0;iRNA_m5C:0 not provided not provided 47630 chr17 73663550 73663550 1 + G T SARC 73663548 + 73663528 73663568 41 GCTGGAATCGAGGCGGTGGGCAGCGCGGCTGGTAAGGCCCA GCTGGAATCGAGGCGGTGGGCATCGCGGCTGGTAAGGCCCA < 41bp 0.831047084590564 0.513333823514689 0.66472834 0.6193209 prediction 0.635426522151748 Functional Loss - SAP30BP ENSG00000161526 CDS Human protein_coding chr17:73663548 chr17:73663550 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_52278 0 0 1 0 1 Cytosol 0.500231643937042 0.500235131265043 0.0908148800000002 0 hm5C_site_47630 DeepMRMD:0.0908148800000002;iRNA_m5C:0 47631 chr10 127693476 127693476 1 + G T UCEC 127693473 + 127693453 127693493 41 TCTAATGCTGGCGTGCTATGCGGGACACCTAGATGTTGTGA TCTAATGCTGGCGTGCTATGCGGTACACCTAGATGTTGTGA < 41bp 0.817706293866024 0.462565397497894 0.9090065 0.6480802 prediction 0.635412587732048 Functional Loss - FANK1 ENSG00000203780 CDS Human protein_coding chr10:127693473 chr10:127693476 nonsynonymous SNV 0.963 4 24 hm5C_associated_SNPs_52279 0 0 0 0 1 exosome 0.500231676274234 0.500231643943646 0.5218526 6.46611770793726e-08 hm5C_site_47631 DeepMRMD:0.5218526;iRNA_m5C:6.46611770793726e-08 47632 chr3 5025075 5025075 1 + G T LUAD 5025072 + 5025052 5025092 41 ACCTGATCAGCTCCCCGTTCCTGGGCCCACACCCACACCAG ACCTGATCAGCTCCCCGTTCCTGTGCCCACACCCACACCAG < 41bp 0.817699614595913 0.433598093447847 0.8088367 0.15256551 prediction 0.635399229191827 Functional Loss - BHLHE40 ENSG00000134107 CDS Human protein_coding chr3:5025072 chr3:5025075 nonsynonymous SNV 0.789 3 24 hm5C_associated_SNPs_52280 0 0 1 0 0 chromatin 0.500231643921092 0.500231643920796 0.6176734 5.92192961335058e-13 hm5C_site_47632 DeepMRMD:0.6176734;iRNA_m5C:5.92192961335058e-13 47633 chrX 117530973 117530973 1 + G T LUAD 117530970 + 117530950 117530990 41 AATGATTAAGAACCTGGATACTGGAGAAGAAATACCTTTGA AATGATTAAGAACCTGGATACTGTAGAAGAAATACCTTTGA < 41bp 0.817696606729195 0.475131584624715 0.106562704 0.025037438 prediction 0.635393213458391 Functional Loss - WDR44 ENSG00000131725 CDS Human protein_coding chrX:117530970 chrX:117530973 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_52281 0 0 1 0 2 Ribosome 0.500231645480026 0.500231643921942 0 3.11616688009053e-09 hm5C_site_47633 DeepMRMD:0;iRNA_m5C:3.11616688009053e-09 47634 chr21 38877665 38877665 1 + G T SARC 38877662 + 38877642 38877682 41 AGGACCTGGTGGGCGACGTGCTGGGGAGTCAGGTCATACGG AGGACCTGGTGGGCGACGTGCTGTGGAGTCAGGTCATACGG < 41bp 0.817693833392295 0.477972981098228 0.72879434 0.40826076 prediction 0.63538766678459 Functional Loss - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38877662 chr21:38877665 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52282 0 0 1 0 1 Cytosol 0.500231643921213 0.500231643873455 0.45758868 9.55169277006007e-11 hm5C_site_47634 DeepMRMD:0.45758868;iRNA_m5C:9.55169277006007e-11 47635 chrX 50659338 50659338 1 + G T UCEC 50659335 + 50659315 50659355 41 TCCAAATCAGCTTCCGCCAGCTGGGTTGGGATCACTGGATC TCCAAATCAGCTTCCGCCAGCTGTGTTGGGATCACTGGATC < 41bp 0.817683004721698 0.445770573420895 0.6787603 0.26334468 prediction 0.635366009443396 Functional Loss - BMP15 ENSG00000130385 CDS Human protein_coding chrX:50659335 chrX:50659338 nonsynonymous SNV 0.114 5 24 hm5C_associated_SNPs_52283 0 0 0 0 0 exosome 0.500231643921093 0.500231644530074 0.3575206 0 hm5C_site_47635 DeepMRMD:0.3575206;iRNA_m5C:0 47636 chr20 37353670 37353670 1 + G T UCEC 37353668 + 37353648 37353688 41 CGCCCTCCGGCTCCAAGGACCAGGTGGGAGGTGGTGGCGAA CGCCCTCCGGCTCCAAGGACCATGTGGGAGGTGGTGGCGAA < 41bp 0.829335897977957 0.511658235800747 0.9084437 0.6993899 prediction 0.635355324354421 Functional Loss - SLC32A1 ENSG00000101438 CDS Human protein_coding chr20:37353668 chr20:37353670 nonsynonymous SNV 0.994 0 23 hm5C_associated_SNPs_52284 0 0 0 0 1 exosome 0.500231643921092 0.500231643920954 0.4181076 2.77777800761214e-13 hm5C_site_47636 DeepMRMD:0.4181076;iRNA_m5C:2.77777800761214e-13 47637 chr10 12148394 12148394 1 + A C LUAD 12148390 + 12148370 12148410 41 CATCTTTGACACATTCATCTCTGGAGGTTGGTGTCAGCGTA CATCTTTGACACATTCATCTCTGGCGGTTGGTGTCAGCGTA < 41bp 0.886973112768432 0.569303262543765 0.23853207 0.22560358 prediction 0.635339700449334 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148390 chr10:12148394 synonymous SNV . 0 25 hm5C_associated_SNPs_52285 0 0 0 0 1 Endoplasmic reticulum 0.500231685435494 0.50023164387778 0 8.31154280955815e-08 hm5C_site_47637 DeepMRMD:0;iRNA_m5C:8.31154280955815e-08 47638 chr9 32784622 32784622 1 + G T HNSC 32784619 + 32784599 32784639 41 CCCACGGAGGAAGGAGAATGCCAGAGCCTCGTCCAGAATGG CCCACGGAGGAAGGAGAATGCCATAGCCTCGTCCAGAATGG < 41bp 0.859822318128263 0.542163213242431 0.529844 0.121071726 prediction 0.635318209771663 Functional Loss - TMEM215 ENSG00000188133 CDS Human protein_coding chr9:32784619 chr9:32784622 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_52286 0 0 0 0 0 exosome 0.500231643910882 0.500231643921092 0.059688 0 hm5C_site_47638 DeepMRMD:0.059688;iRNA_m5C:0 47639 chrX 89177169 89177169 1 + G T COAD 89177166 + 89177146 89177186 41 CGAAGACCCAAAGCCCAGCCCAAGACACCTCAATCATGTCG CGAAGACCCAAAGCCCAGCCCAATACACCTCAATCATGTCG < 41bp 0.81765763821662 0.455208604714372 0.008763313 0.0226444 prediction 0.63531527643324 Functional Loss - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177166 chrX:89177169 nonsynonymous SNV 0.005 2 24 hm5C_associated_SNPs_52287 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47639 DeepMRMD:0;iRNA_m5C:0 47640 chrX 49103250 49103250 1 + A C COAD 49103246 + 49103226 49103266 41 AGCAACTGACTGAGCATCTGCGCCAAAGCTGGGGCCTGCTT AGCAACTGACTGAGCATCTGCGCCCAAGCTGGGGCCTGCTT < 41bp 0.817654911842996 0.40624345585805 0.3312266 0.24852374 prediction 0.635309823685992 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103246 chrX:49103250 nonsynonymous SNV 0.718 3 25 hm5C_associated_SNPs_52288 0 0 1 0 1 Cytosol 0.500232514831075 0.500098710250669 0 0.000267609160812476 hm5C_site_47640 DeepMRMD:0;iRNA_m5C:0.000267609160812476 47641 chr11 113264424 113264424 1 + G T UCEC 113264422 + 113264402 113264442 41 TTGGCCATGAACTTCCTGCACAGCATTAAGCCGCCTCTGCT TTGGCCATGAACTTCCTGCACATCATTAAGCCGCCTCTGCT < 41bp 0.817636219504234 0.499233589648519 0.22861987 0.08813596 prediction 0.635272439008467 Functional Loss - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113264422 chr11:113264424 nonsynonymous SNV 0.974 3 23 hm5C_associated_SNPs_52289 0 0 0 0 1 exosome 0.500231644036633 0.500231643991235 0 9.07962593998946e-11 hm5C_site_47641 DeepMRMD:0;iRNA_m5C:9.07962593998946e-11 47642 chr15 91187034 91187034 1 + A C rs182337585 91187030 + 91187010 91187050 41 GAAGGAGAGACGGAAGATGCCAGGACCTTTGCTTGGACAGC GAAGGAGAGACGGAAGATGCCAGGCCCTTTGCTTGGACAGC < 41bp 0.817634164447613 0.486832563558926 0.8928968 0.85753846 prediction 0.635268328895225 Functional Loss - CRTC3-AS1 ENSG00000259736 ncRNA_intronic Human antisense chr15:91187030 chr15:91187034 . . 0 25 hm5C_associated_SNPs_52290 0 0 1 0 0 unknown 0.500231587689315 0.500231747108216 0.0707166800000001 0 hm5C_site_47642 DeepMRMD:0.0707166800000001;iRNA_m5C:0 47643 chr13 103492015 103492015 1 + G T UCEC 103492012 + 103491992 103492032 41 TTCCATTTGGAACCATTAGACAAGAATCACAACCTCCAACA TTCCATTTGGAACCATTAGACAATAATCACAACCTCCAACA < 41bp 0.848855224829073 0.531232342650193 0.16330937 0.06577501 prediction 0.635245764357762 Functional Loss - BIVM;BIVM-ERCC5 ENSG00000134897;ENSG00000270181 CDS Human other chr13:103492012 chr13:103492015 stopgain 1.000 0 24 hm5C_associated_SNPs_52291 0 0 1 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_47643 DeepMRMD:0;iRNA_m5C:0 47644 chr1 150900290 150900290 1 + G T UCEC 150900287 + 150900267 150900307 41 AACAGGCAGTGGTTGAGGAACTGGGTATCTCTATGGAGGAA AACAGGCAGTGGTTGAGGAACTGTGTATCTCTATGGAGGAA < 41bp 0.817612468183716 0.454463795780599 0.3378074 0.044763684 prediction 0.635224936367432 Functional Loss - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150900287 chr1:150900290 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_52292 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_47644 DeepMRMD:0;iRNA_m5C:0 47645 chr17 8167564 8167564 1 + G T CESC 8167562 + 8167542 8167582 41 GACGATCGGGAGTGTCCTGTCAGAAGAAATGGCCAGGGGGA GACGATCGGGAGTGTCCTGTCATAAGAAATGGCCAGGGGGA < 41bp 0.832106188503338 0.514515817232209 0.92328703 0.48888674 prediction 0.635180742542257 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8167562 chr17:8167564 nonsynonymous SNV 0.022 0 23 hm5C_associated_SNPs_52293 0 0 1 0 1 Nucleus 0.500231643921093 0.500231649121511 0.84657406 0 hm5C_site_47645 DeepMRMD:0.84657406;iRNA_m5C:0 47646 chr12 117013864 117013864 1 + G T UCEC 117013861 + 117013841 117013881 41 CCGGTGATAATAGAACGATACAAGGGTGAGAAGCAGCTTCC CCGGTGATAATAGAACGATACAATGGTGAGAAGCAGCTTCC < 41bp 0.864899751265476 0.547326992713821 0.7497339 0.12333521 prediction 0.635145517103311 Functional Loss - MAP1LC3B2 ENSG00000171471 CDS Human other chr12:117013861 chr12:117013864 nonsynonymous SNV 0.833 0 24 hm5C_associated_SNPs_52294 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.4994678 0 hm5C_site_47646 DeepMRMD:0.4994678;iRNA_m5C:0 47647 chr11 4842928 4842928 1 + G T COAD 4842925 + 4842905 4842945 41 GTGTCTTCTGGTTTGAAGCCCGAGAAATCAACCTAAATGCC GTGTCTTCTGGTTTGAAGCCCGATAAATCAACCTAAATGCC < 41bp 0.817564397187692 0.467363338257986 0.23837179 0.055228204 prediction 0.635128794375384 Functional Loss - OR51F2 ENSG00000176925 CDS Human protein_coding chr11:4842925 chr11:4842928 stopgain 0.077 0 24 hm5C_associated_SNPs_52295 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47647 DeepMRMD:0;iRNA_m5C:0 47648 chr6 158349731 158349731 1 + G T LUSC 158349729 + 158349709 158349749 41 GGAGCACTGGAAGCGCTGCACGGGCCGTAAGTCCACTCCTC GGAGCACTGGAAGCGCTGCACGTGCCGTAAGTCCACTCCTC < 41bp 0.826857183624426 0.509312335427565 0.8340769 0.35299617 prediction 0.635089696393722 Functional Loss - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158349729 chr6:158349731 nonsynonymous SNV 0.294 4 23 hm5C_associated_SNPs_52296 0 0 1 0 1 Ribosome 0.500231643886453 0.500231641189442 0.6681538 5.39402056354277e-09 hm5C_site_47648 DeepMRMD:0.6681538;iRNA_m5C:5.39402056354277e-09 47649 chr2 207834004 207834004 1 + A C COAD 207834000 + 207833980 207834020 41 AACATATGGGTTTGTTCTGCCAGAAGCTCAGATCCAGCCCA AACATATGGGTTTGTTCTGCCAGACGCTCAGATCCAGCCCA < 41bp 0.876522317220616 0.558977587564458 0.5540302 0.30539435 prediction 0.635089459312318 Functional Loss - CPO ENSG00000144410 CDS Human protein_coding chr2:207834000 chr2:207834004 nonsynonymous SNV 0.108 2 25 hm5C_associated_SNPs_52297 0 0 0 0 0 exosome 0.500231692358504 0.500231643921219 0.1080604 9.68745688112449e-08 hm5C_site_47649 DeepMRMD:0.1080604;iRNA_m5C:9.68745688112449e-08 47650 chr4 4317667 4317667 1 + G T LUAD 4317665 + 4317645 4317685 41 AAAGCACAGAATTCGGCACACGGGGGAGCGGCCTTACAGCT AAAGCACAGAATTCGGCACACGTGGGAGCGGCCTTACAGCT < 41bp 0.821241834992138 0.503712911868169 0.9224871 0.8810644 prediction 0.635057846247939 Functional Loss - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4317665 chr4:4317667 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52298 0 0 0 0 1 nucleoplasm 0.500231643409861 0.500234040584832 0.0828454000000001 0 hm5C_site_47650 DeepMRMD:0.0828454000000001;iRNA_m5C:0 47651 chr1 158576528 158576528 1 + G T BLCA 158576525 + 158576505 158576545 41 TCCTATGTGGGCTGTGCTGCCCAGATGTTCTTTTCTGCCTC TCCTATGTGGGCTGTGCTGCCCATATGTTCTTTTCTGCCTC < 41bp 0.868708662986097 0.551183691847757 0.296922 0.17158046 prediction 0.635049942276681 Functional Loss - OR10Z1 ENSG00000198967 CDS Human protein_coding chr1:158576525 chr1:158576528 nonsynonymous SNV 0.977 2 24 hm5C_associated_SNPs_52299 0 0 0 0 0 unknown 0.500231644106545 0.500231643928889 0 3.55313112265776e-10 hm5C_site_47651 DeepMRMD:0;iRNA_m5C:3.55313112265776e-10 47652 chr19 50957559 50957559 1 + G T LUAD 50957556 + 50957536 50957576 41 CCGGAGGCTGTGCGCATCACCTCGGTTGGAGAGGATTGGGC CCGGAGGCTGTGCGCATCACCTCTGTTGGAGAGGATTGGGC < 41bp 0.817515876534372 0.443403319677105 0.4383152 0.04299873 prediction 0.635031753068745 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957556 chr19:50957559 synonymous SNV . 0 24 hm5C_associated_SNPs_52300 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 4.44089209850063e-16 hm5C_site_47652 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 47653 chr22 29834829 29834829 1 + A C UCEC 29834825 + 29834805 29834845 41 ACTAACAGGCTTTCACCTCACGGAAATTTTCTTCCCTTGTG ACTAACAGGCTTTCACCTCACGGACATTTTCTTCCCTTGTG < 41bp 0.864383354998118 0.546889675757183 0.59415275 0.13999408 prediction 0.63498735848187 Functional Loss - RFPL1 ENSG00000128250 CDS Human protein_coding chr22:29834825 chr22:29834829 nonsynonymous SNV 0.028 1 25 hm5C_associated_SNPs_52301 0 0 0 0 0 exosome 0.500231643920483 0.50023164393719 0.1883055 0 hm5C_site_47653 DeepMRMD:0.1883055;iRNA_m5C:0 47654 chr22 31365894 31365894 1 + A C rs113344826 31365890 + 31365870 31365910 41 GGTTTTCTTCCGGGCCTAGCCACCAGTTGGCGGAGTGACCT GGTTTTCTTCCGGGCCTAGCCACCCGTTGGCGGAGTGACCT < 41bp 0.817485377523648 0.478351905517049 0.118050545 0.09581047 prediction 0.634970755047296 Functional Loss - TUG1 ENSG00000253352 upstream Human antisense chr22:31365890 chr22:31365894 . . 0 25 hm5C_associated_SNPs_52302 0 0 1 0 0 unknown 0.500231643922592 0.500231626183776 0 3.54776323874262e-08 hm5C_site_47654 DeepMRMD:0;iRNA_m5C:3.54776323874262e-08 47655 chr15 44092917 44092917 1 + G T SARC 44092915 + 44092895 44092935 41 ACGGAAACATGACAGCGGTGCGGCGGACTTGGAGCGGGTCA ACGGAAACATGACAGCGGTGCGTCGGACTTGGAGCGGGTCA < 41bp 0.817483853081645 0.496600856665194 0.8901902 0.26239392 prediction 0.634967706163289 Functional Loss - HYPK ENSG00000140264;ENSG00000242028 CDS Human other chr15:44092915 chr15:44092917 nonsynonymous SNV 0.989 3 23 hm5C_associated_SNPs_52303 0 0 1 0 1 Cytosol 0.500231643926196 0.500231182956308 0.7803804 9.21939774745084e-07 hm5C_site_47655 DeepMRMD:0.7803804;iRNA_m5C:9.21939774745084e-07 47656 chr19 13056794 13056794 1 + A C LIHC 13056790 + 13056770 13056810 41 TCACCATCACGCTCAAAACGCTGCAGCAGCAGACCTTCAAG TCACCATCACGCTCAAAACGCTGCCGCAGCAGACCTTCAAG < 41bp 0.872232464427481 0.554754922413691 0.20372626 0.19754356 prediction 0.634955084027581 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13056790 chr19:13056794 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_52304 0 0 1 0 1 Ribosome 0.500292252743694 0.500231643917505 0 0.00012121765237727 hm5C_site_47656 DeepMRMD:0;iRNA_m5C:0.00012121765237727 47657 chr7 142561853 142561853 1 + G T LUAD 142561850 + 142561830 142561870 41 AGACACACTTTGTGGAGCGGCGCGGGGCCCAGAGGGCGCAC AGACACACTTTGTGGAGCGGCGCTGGGCCCAGAGGGCGCAC < 41bp 0.878373062255776 0.560912646076611 0.27006656 0.08228105 prediction 0.63492083235833 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561850 chr7:142561853 nonsynonymous SNV 0.846 3 24 hm5C_associated_SNPs_52305 0 0 0 0 0 Endoplasmic reticulum 0.500231643921193 0.500231643919446 0 3.49542617072984e-12 hm5C_site_47657 DeepMRMD:0;iRNA_m5C:3.49542617072984e-12 47658 chr11 123777633 123777633 1 + G T LUSC 123777630 + 123777610 123777650 41 ATCCATGGAGGTTGTATACTCAGGTTGTCTTTCTGTGGATC ATCCATGGAGGTTGTATACTCAGTTTGTCTTTCTGTGGATC < 41bp 0.817413216764092 0.460294423108107 0.89475834 0.4086152 prediction 0.634826433528184 Functional Loss - OR8D4 ENSG00000181518 CDS Human protein_coding chr11:123777630 chr11:123777633 nonsynonymous SNV 0.747 2 24 hm5C_associated_SNPs_52306 0 0 0 0 0 unknown 0.500231643921094 0.500231643921092 0.78951668 2.88657986402541e-15 hm5C_site_47658 DeepMRMD:0.78951668;iRNA_m5C:2.88657986402541e-15 47659 chr19 39760615 39760615 1 + G T CESC 39760612 + 39760592 39760632 41 ACCTCTTCCGCCTCCTCACGCGAGACCTGAATTGTGTTGCC ACCTCTTCCGCCTCCTCACGCGATACCTGAATTGTGTTGCC < 41bp 0.873190249159563 0.55579211121777 0.42908013 0.17483938 prediction 0.634796275883586 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760612 chr19:39760615 nonsynonymous SNV 0.131 4 24 hm5C_associated_SNPs_52307 0 0 0 0 1 exosome 0.500231643921092 0.50023164390621 0 2.97650792902004e-11 hm5C_site_47659 DeepMRMD:0;iRNA_m5C:2.97650792902004e-11 47660 chr10 104486811 104486811 1 + G T SARC 104486809 + 104486789 104486829 41 TGCCAAGAAGCTGTATGACTCGGCCTTCCACCCCGACACTG TGCCAAGAAGCTGTATGACTCGTCCTTCCACCCCGACACTG < 41bp 0.822875601279531 0.505487075682218 0.8915373 0.0385862 prediction 0.634777051194627 Functional Loss - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104486809 chr10:104486811 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_52308 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921076 0.7830746 3.37507799486048e-14 hm5C_site_47660 DeepMRMD:0.7830746;iRNA_m5C:3.37507799486048e-14 47661 chr6 167708048 167708048 1 + G T LGG 167708046 + 167708026 167708066 41 GGCCTGGGTGTCACAGCGCTCAGCACCCTCTATGGAGGCAT GGCCTGGGTGTCACAGCGCTCATCACCCTCTATGGAGGCAT < 41bp 0.817376381805464 0.492294962636356 0.23895183 0.057233095 prediction 0.634752763610927 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708046 chr6:167708048 nonsynonymous SNV 0.092 3 23 hm5C_associated_SNPs_52309 0 0 0 0 1 cytosol 0.500231643921233 0.50023163911731 0 9.60784451997654e-09 hm5C_site_47661 DeepMRMD:0;iRNA_m5C:9.60784451997654e-09 47662 chr17 43246726 43246726 1 + C A SKCM 43246729 - 43246709 43246749 41 TGGGTGGTGTTGTAGGGGGCCACGGGCTGGCCTTTGGCGAA TGGGTGGTGTTGTAGGGGGCCACTGGCTGGCCTTTGGCGAA < 41bp 0.817356977522628 0.466944618629892 0.77967143 0.21641761 prediction 0.634713955045256 Functional Loss - HEXIM2 ENSG00000168517 CDS Human protein_coding chr17:43246729 chr17:43246726 synonymous SNV . 0 24 hm5C_associated_SNPs_52310 0 0 0 0 0 chromatin 0.500231643921092 0.500231698492818 0.55934286 0 hm5C_site_47662 DeepMRMD:0.55934286;iRNA_m5C:0 47663 chr6 100062509 100062509 1 + G T LUSC 100062506 + 100062486 100062526 41 CTCGCCAAAGCGGGCGACGGCCCGGGTGCCGAGCCCGGCTA CTCGCCAAAGCGGGCGACGGCCCTGGTGCCGAGCCCGGCTA < 41bp 0.869231229736837 0.551889659658454 0.91670954 0.84459853 prediction 0.634683140156765 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100062506 chr6:100062509 synonymous SNV . 0 24 hm5C_associated_SNPs_52311 0 0 0 0 0 exosome 0.500231643921029 0.500231643919524 0.14422202 3.00959257515387e-12 hm5C_site_47663 DeepMRMD:0.14422202;iRNA_m5C:3.00959257515387e-12 47664 chr2 158980300 158980300 1 + G T LUAD 158980298 + 158980278 158980318 41 GGAGCACTGTGCTCCTTTTCCAGAGAAAAAAAGTTAGACTA GGAGCACTGTGCTCCTTTTCCATAGAAAAAAAGTTAGACTA < 41bp 0.817339407696287 0.495975339201039 0.919201 0.2598006 prediction 0.634678815392574 Functional Loss - UPP2 ENSG00000007001 CDS Human protein_coding chr2:158980298 chr2:158980300 nonsynonymous SNV 0.976 1 23 hm5C_associated_SNPs_52312 0 0 0 0 1 Cytosol 0.500231803244476 0.5002306841509 0.838402 2.23818715139323e-06 hm5C_site_47664 DeepMRMD:0.838402;iRNA_m5C:2.23818715139323e-06 47665 chr11 61015981 61015981 1 + G T LUAD 61015978 + 61015958 61015998 41 AACTGGGTGCCTGTTACCGTCGAGGGTTACTGGCAGATCAC AACTGGGTGCCTGTTACCGTCGATGGTTACTGGCAGATCAC < 41bp 0.817331722639416 0.440946538779121 0.85981125 0.19269273 prediction 0.634663445278831 Functional Loss - PGA5 ENSG00000229183;ENSG00000256713 CDS Human other chr11:61015978 chr11:61015981 nonsynonymous SNV 0.857 0 24 hm5C_associated_SNPs_52313 0 0 0 0 2 exosome 0.500231643921092 0.500231643876275 0.7196225 8.96358542945563e-11 hm5C_site_47665 DeepMRMD:0.7196225;iRNA_m5C:8.96358542945563e-11 47666 chr5 32712331 32712331 1 + G T THYM 32712329 + 32712309 32712349 41 GTGGCCCGGCTTGCATCGCACTGGGACCTGCCCATGCTGTC GTGGCCCGGCTTGCATCGCACTTGGACCTGCCCATGCTGTC < 41bp 0.822445282251116 0.505128379074528 0.76511115 0.31117558 prediction 0.634633806353177 Functional Loss - NPR3 ENSG00000113389 CDS Human protein_coding chr5:32712329 chr5:32712331 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_52314 0 0 1 0 0 nucleoplasm 0.50023164392098 0.500231643921077 0.5302223 0 hm5C_site_47666 DeepMRMD:0.5302223;iRNA_m5C:0 47667 chr11 124910534 124910534 1 + G T UCEC 124910531 + 124910511 124910551 41 CATCAATTCCTGTGATGTCCCTGGGGGTAATTCAACTCTTC CATCAATTCCTGTGATGTCCCTGTGGGTAATTCAACTCTTC < 41bp 0.817295492516293 0.464456056604221 0.64978874 0.041138023 prediction 0.634590985032586 Functional Loss - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124910531 chr11:124910534 nonsynonymous SNV 0.027 1 24 hm5C_associated_SNPs_52315 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921076 0.29957748 3.26405569239796e-14 hm5C_site_47667 DeepMRMD:0.29957748;iRNA_m5C:3.26405569239796e-14 47668 chr1 65143906 65143906 1 + G T LUSC 65143903 + 65143883 65143923 41 ACAGTGATGGAAAGACTCACCTGGACAAACCCTACTGTGCC ACAGTGATGGAAAGACTCACCTGTACAAACCCTACTGTGCC < 41bp 0.817292637130258 0.469607576528111 0.43616217 0.31174058 prediction 0.634585274260517 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65143903 chr1:65143906 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52316 0 0 1 0 2 unknown 0.50023164425142 0.500231643930109 0 6.42622843827212e-10 hm5C_site_47668 DeepMRMD:0;iRNA_m5C:6.42622843827212e-10 47669 chr1 236908035 236908035 1 + G T LUSC 236908033 + 236908013 236908053 41 AGAGCGACCTGGCAGCGCACCAGGACCGCGTGGAGCAGATC AGAGCGACCTGGCAGCGCACCATGACCGCGTGGAGCAGATC < 41bp 0.837388749582731 0.520105487156036 0.8689898 0.050944507 prediction 0.634566524853389 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236908033 chr1:236908035 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_52317 0 0 0 0 1 chromatin 0.500231643921091 0.500231645588794 0.7379796 0 hm5C_site_47669 DeepMRMD:0.7379796;iRNA_m5C:0 47670 chr2 162279953 162279953 1 + G T LUAD 162279951 + 162279931 162279971 41 GCCGCGCTCGCAGATCGTGCCCGGGGCCCGCTACGCCATGG GCCGCGCTCGCAGATCGTGCCCTGGGCCCGCTACGCCATGG < 41bp 0.817281674139558 0.489012264091944 0.9351363 0.0838511 prediction 0.634563348279116 Functional Loss - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162279951 chr2:162279953 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52318 0 0 1 0 1 exosome 0.500231642083177 0.500231643908134 0.8702726 0 hm5C_site_47670 DeepMRMD:0.8702726;iRNA_m5C:0 47671 chr12 6426547 6426547 1 + G T GBM 6426544 + 6426524 6426564 41 TGGCTTACGCCCGAGAACAGCAAGAAACTAACCCTCTCTTC TGGCTTACGCCCGAGAACAGCAATAAACTAACCCTCTCTTC < 41bp 0.817280399416981 0.43814345450333 0.35042393 0.24636802 prediction 0.634560798833962 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6426544 chr12:6426547 stopgain 0.970 0 24 hm5C_associated_SNPs_52319 0 0 0 0 2 Nucleus 0.500231643924217 0.500231642795274 0 2.25788654439896e-09 hm5C_site_47671 DeepMRMD:0;iRNA_m5C:2.25788654439896e-09 47672 chr1 154401785 154401785 1 + G T LUAD 154401783 + 154401763 154401803 41 CTGGGTGCTCAGGAAGCCGGCTGCAGGCTCCCACCCCAGCA CTGGGTGCTCAGGAAGCCGGCTTCAGGCTCCCACCCCAGCA < 41bp 0.817264862817178 0.499998560559209 0.35892442 0.3245536 prediction 0.634529725634355 Functional Loss - IL6R ENSG00000160712 CDS Human protein_coding chr1:154401783 chr1:154401785 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52320 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_47672 DeepMRMD:0;iRNA_m5C:0 47673 chr11 64789292 64789292 1 + G T UCEC 64789289 + 64789269 64789309 41 TGCCGGGCATCGACTGGCTCCTGGATGACATTTCCAGCCGC TGCCGGGCATCGACTGGCTCCTGTATGACATTTCCAGCCGC < 41bp 0.817262722392942 0.465379883751326 0.49629486 0.04230514 prediction 0.634525444785884 Functional Loss - ARL2 ENSG00000213465 CDS Human protein_coding chr11:64789289 chr11:64789292 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_52321 0 0 1 0 1 Cytosol 0.500231645531718 0.500231643919222 0 3.2249913850535e-09 hm5C_site_47673 DeepMRMD:0;iRNA_m5C:3.2249913850535e-09 47674 chr16 84363202 84363202 1 + A C rs28488626 84363198 + 84363178 84363218 41 CCCGGGAAGAAGCCGCCACCCATGAAAGCATTTCTGAAGCC CCCGGGAAGAAGCCGCCACCCATGCAAGCATTTCTGAAGCC < 41bp 0.836681047379344 0.519423846419934 0.15233034 0.033777446 prediction 0.63451440191882 Functional Loss - WFDC1 ENSG00000103175 UTR3 Human protein_coding chr16:84363198 chr16:84363202 . . 0 25 hm5C_associated_SNPs_52322 0 0 0 0 0 exosome 0.500231645307532 0.500231663471563 0 0 hm5C_site_47674 DeepMRMD:0;iRNA_m5C:0 47675 chr5 140021484 140021484 1 + G T SARC 140021482 + 140021462 140021502 41 GGCAGCATGCGGACCCTGGTCGGGCTCCTGACCAGCAACCA GGCAGCATGCGGACCCTGGTCGTGCTCCTGACCAGCAACCA < 41bp 0.825158205008936 0.507905769437873 0.7920431 0.20347431 prediction 0.634504871142126 Functional Loss - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140021482 chr5:140021484 nonsynonymous SNV 0.906 2 23 hm5C_associated_SNPs_52323 0 0 1 0 1 chromatin 0.500231643921474 0.500231622634535 0.5840862 4.25738784226581e-08 hm5C_site_47675 DeepMRMD:0.5840862;iRNA_m5C:4.25738784226581e-08 47676 chr16 3043124 3043124 1 + G T rs376764430 3043121 + 3043101 3043141 41 CCTTCCTGGGAGCTGGAACCCAGGCAGGTAAGGCCCTGGAG CCTTCCTGGGAGCTGGAACCCAGTCAGGTAAGGCCCTGGAG < 41bp 0.817246783435119 0.473239057709158 0.79428256 0.43164638 prediction 0.634493566870238 Functional Loss - LINC00514 ENSG00000262152 ncRNA_exonic Human processed_transcript chr16:3043121 chr16:3043124 . . 0 24 hm5C_associated_SNPs_52324 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.58856512 0 hm5C_site_47676 DeepMRMD:0.58856512;iRNA_m5C:0 47677 chr11 119043093 119043093 1 + G T SARC 119043090 + 119043070 119043110 41 CGTATCCCCTTCCTGATCCACTGGAGTTGGCCCCTTCAAGG CGTATCCCCTTCCTGATCCACTGTAGTTGGCCCCTTCAAGG < 41bp 0.817244979021046 0.440910568914565 0.8828165 0.48259038 prediction 0.634489958042091 Functional Loss - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119043090 chr11:119043093 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_52325 0 0 0 0 2 exosome 0.50023164385081 0.500231643921093 0.765633 0 hm5C_site_47677 DeepMRMD:0.765633;iRNA_m5C:0 47678 chr9 35853153 35853153 1 + G T BLCA 35853150 + 35853130 35853170 41 TTCTCTAGGTGCTGTATTTGCTGGGAGCTATGCTGCTGTCC TTCTCTAGGTGCTGTATTTGCTGTGAGCTATGCTGCTGTCC < 41bp 0.882756145824749 0.565522793100795 0.85705525 0.33704734 prediction 0.634466705447909 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35853150 chr9:35853153 stopgain 0.998 0 24 hm5C_associated_SNPs_52326 0 0 0 0 1 cytosol 0.50023164423282 0.500233539188275 0.7141105 0 hm5C_site_47678 DeepMRMD:0.7141105;iRNA_m5C:0 47679 chr19 54649779 54649779 1 + G T LUSC 54649776 + 54649756 54649796 41 CCCAGCCCAGCCAACTGTACCACGGTGAGGCCCCACGGGAC CCCAGCCCAGCCAACTGTACCACTGTGAGGCCCCACGGGAC < 41bp 0.817229408040437 0.44094910846467 0.43363988 0.17648387 prediction 0.634458816080875 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54649776 chr19:54649779 synonymous SNV . 0 24 hm5C_associated_SNPs_52327 0 0 1 0 1 Ribosome 0.500231655065081 0.500231643983732 0 2.21626981211642e-08 hm5C_site_47679 DeepMRMD:0;iRNA_m5C:2.21626981211642e-08 47680 chr14 52735015 52735015 1 + G T LUAD 52735013 + 52734993 52735033 41 CGGTGGTGAGCGCCTTCTCCCTGGCTTTCTGCGCGCTACCT CGGTGGTGAGCGCCTTCTCCCTTGCTTTCTGCGCGCTACCT < 41bp 0.817228180389746 0.495684813660608 0.50823236 0.18008018 prediction 0.634456360779492 Functional Loss - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52735013 chr14:52735015 synonymous SNV . 0 23 hm5C_associated_SNPs_52328 0 0 0 0 0 exosome 0.500231643920996 0.50023164392109 0.0164647200000001 0 hm5C_site_47680 DeepMRMD:0.0164647200000001;iRNA_m5C:0 47681 chr14 52735016 52735016 1 + G T UCEC 52735013 + 52734993 52735033 41 CGGTGGTGAGCGCCTTCTCCCTGGCTTTCTGCGCGCTACCT CGGTGGTGAGCGCCTTCTCCCTGTCTTTCTGCGCGCTACCT < 41bp 0.817228180389746 0.451774596629859 0.50823236 0.13109317 prediction 0.634456360779492 Functional Loss - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52735013 chr14:52735016 nonsynonymous SNV 0.636 0 24 hm5C_associated_SNPs_52329 0 0 0 0 0 exosome 0.500231643920996 0.500231643921092 0.0164647200000001 0 hm5C_site_47681 DeepMRMD:0.0164647200000001;iRNA_m5C:0 47682 chr5 33938038 33938038 1 + A C OV 33938034 + 33938014 33938054 41 GCCTCGTGCGCCGCGAGTTCCGCAAGGCGCTCAAGAGCCTG GCCTCGTGCGCCGCGAGTTCCGCACGGCGCTCAAGAGCCTG < 41bp 0.875871650961171 0.55864348718242 0.18059984 0.07530975 prediction 0.634456327557503 Functional Loss - RXFP3 ENSG00000182631 CDS Human protein_coding chr5:33938034 chr5:33938038 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_52330 0 0 0 0 0 unknown 0.500232191643851 0.500217725073945 0 2.89331398131143e-05 hm5C_site_47682 DeepMRMD:0;iRNA_m5C:2.89331398131143e-05 47683 chr7 36194773 36194773 1 + G T LUAD 36194770 + 36194750 36194790 41 GTGGAGAAGGCCAACAACCCCGGGGTGCGAGAGGTGGTGTG GTGGAGAAGGCCAACAACCCCGGTGTGCGAGAGGTGGTGTG < 41bp 0.872890000893573 0.555666860357897 0.9005841 0.656116 prediction 0.634446281071353 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36194770 chr7:36194773 synonymous SNV . 0 24 hm5C_associated_SNPs_52331 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921092 0.4889362 0 hm5C_site_47683 DeepMRMD:0.4889362;iRNA_m5C:0 47684 chr22 18063881 18063881 1 + G T UCEC 18063878 + 18063858 18063898 41 GTGTTCCCCATCGACTTGGCCAAGACTCGCCTGCAGAACCA GTGTTCCCCATCGACTTGGCCAATACTCGCCTGCAGAACCA < 41bp 0.817220187684683 0.440784571238295 0.18581799 0.1142014 prediction 0.634440375369367 Functional Loss - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18063878 chr22:18063881 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_52332 0 0 0 0 2 exosome 0.500231643925904 0.500231641988813 0 3.87418364056202e-09 hm5C_site_47684 DeepMRMD:0;iRNA_m5C:3.87418364056202e-09 47685 chr4 7032973 7032973 1 + T G rs140363072 7032977 - 7032957 7032997 41 GGCTGCTGCCCTGGCCTCCACTGAACAGGCAGGTGGGAGAG GGCTGCTGCCCTGGCCTCCACTGACCAGGCAGGTGGGAGAG < 41bp 0.817215629167417 0.460271646366312 0.15362024 0.07683194 prediction 0.634431258334834 Functional Loss - LOC100129931 ENSG00000245748 ncRNA_exonic Human antisense chr4:7032977 chr4:7032973 . . 0 25 hm5C_associated_SNPs_52333 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_47685 DeepMRMD:0;iRNA_m5C:0 47686 chr11 76826599 76826599 1 + G T CESC 76826596 + 76826576 76826616 41 ATGATCCGCCTGCGCAACCCCTGGGGCGAGCGGGAGTGGAA ATGATCCGCCTGCGCAACCCCTGTGGCGAGCGGGAGTGGAA < 41bp 0.817211885352624 0.443763602711157 0.7561157 0.37086928 prediction 0.634423770705249 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76826596 chr11:76826599 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52334 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643917571 0.5122314 7.04325486822199e-12 hm5C_site_47686 DeepMRMD:0.5122314;iRNA_m5C:7.04325486822199e-12 47687 chr19 45452429 45452429 1 + A C rs5126 45452425 + 45452405 45452445 41 TTTCTCCCCAGGGACTTGTACAGCAAAAGCACAGCAGCCAT TTTCTCCCCAGGGACTTGTACAGCCAAAGCACAGCAGCCAT < 41bp 0.817211359175782 0.437582036563574 0.15463659 0.20533395 prediction 0.634422718351564 Functional Loss - APOC2 ENSG00000224916;ENSG00000234906 CDS Human other chr19:45452425 chr19:45452429 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_52335 1 0 1 0 1 cytosol 0.5002316439209 0.500225743481026 0 1.18008797487246e-05 hm5C_site_47687 DeepMRMD:0;iRNA_m5C:1.18008797487246e-05 APOLIPOPROTEIN C-II (AFRICAN) APOLIPOPROTEIN C-II (AFRICAN) 47688 chr11 126162666 126162666 1 + G T SARC 126162664 + 126162644 126162684 41 CTGCGCTGCTTCCTGCAACTCCGGGATGCAACCCCAGGCGG CTGCGCTGCTTCCTGCAACTCCTGGATGCAACCCCAGGCGG < 41bp 0.843517217803728 0.526306537944632 0.9188096 0.11773306 prediction 0.634421359718191 Functional Loss - TIRAP ENSG00000150455 CDS Human protein_coding chr11:126162664 chr11:126162666 nonsynonymous SNV 0.694 4 23 hm5C_associated_SNPs_52336 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.8376192 0 hm5C_site_47688 DeepMRMD:0.8376192;iRNA_m5C:0 47689 chr4 123665029 123665029 1 + G T UCEC 123665026 + 123665006 123665046 41 AAATAAACTGGAGCAGATTCCGAGAGTTTATGACGTTGTTA AAATAAACTGGAGCAGATTCCGATAGTTTATGACGTTGTTA < 41bp 0.844707628766861 0.527518764058644 0.8882266 0.33085412 prediction 0.634377729416432 Functional Loss - BBS12 ENSG00000181004 CDS Human protein_coding chr4:123665026 chr4:123665029 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_52337 0 0 0 0 0 Cytosol 0.500231643898231 0.500231526767129 0.7764532 2.34262204745761e-07 hm5C_site_47689 DeepMRMD:0.7764532;iRNA_m5C:2.34262204745761e-07 47690 chrX 47230094 47230094 1 + G T SARC 47230091 + 47230071 47230111 41 CCAGCTAATGGGACATCACCCCAGAGATTCCCTGCCCTGAT CCAGCTAATGGGACATCACCCCATAGATTCCCTGCCCTGAT < 41bp 0.817175200354401 0.461943628495029 0.8333521 0.17588487 prediction 0.634350400708802 Functional Loss - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47230091 chrX:47230094 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_52338 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0.6667042 2.22044604925031e-16 hm5C_site_47690 DeepMRMD:0.6667042;iRNA_m5C:2.22044604925031e-16 47691 chr1 11894362 11894362 1 + G T KIRC 11894359 + 11894339 11894379 41 GGTGCAGCGGCTTTCTTGGGCGGGGTGGTCCGCATGACCAT GGTGCAGCGGCTTTCTTGGGCGGTGTGGTCCGCATGACCAT < 41bp 0.886809286443033 0.569635867561472 0.6486671 0.19406897 prediction 0.634346837763123 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11894359 chr1:11894362 synonymous SNV . 0 24 hm5C_associated_SNPs_52339 0 0 1 0 2 Endoplasmic reticulum 0.500231636283009 0.50023164392101 0.2973342 0 hm5C_site_47691 DeepMRMD:0.2973342;iRNA_m5C:0 47692 chr19 42794466 42794466 1 + G T LUSC 42794464 + 42794444 42794484 41 CCCACTGGACCCTGAGCCCCCAGGGCCCCCGGATCCTCCTG CCCACTGGACCCTGAGCCCCCATGGCCCCCGGATCCTCCTG < 41bp 0.817173365242069 0.479900878652987 0.90229344 0.33231354 prediction 0.634346730484137 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42794464 chr19:42794466 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52340 0 0 1 0 1 Cytosol 0.500231643952044 0.500231692244847 0.80458688 0 hm5C_site_47692 DeepMRMD:0.80458688;iRNA_m5C:0 47693 chr2 177034035 177034035 1 + G T ESCA 177034032 + 177034012 177034052 41 GCTCCCTGGACACTGACTATCCAGGTTCTGCCTGCTCCATC GCTCCCTGGACACTGACTATCCATGTTCTGCCTGCTCCATC < 41bp 0.817165313719258 0.440190686972231 0.92194545 0.22048536 prediction 0.634330627438516 Functional Loss - HOXD3 ENSG00000128652 CDS Human protein_coding chr2:177034032 chr2:177034035 nonsynonymous SNV 0.946 4 24 hm5C_associated_SNPs_52341 0 0 0 0 0 exosome 0.500231644466093 0.500232365814301 0.8438909 0 hm5C_site_47693 DeepMRMD:0.8438909;iRNA_m5C:0 47694 chr12 56625323 56625323 1 + G T COAD 56625321 + 56625301 56625341 41 GACTGGACGGGCTGCATCCCCAGCTGCAGACAATTCCACAC GACTGGACGGGCTGCATCCCCATCTGCAGACAATTCCACAC < 41bp 0.817159900523814 0.497773912564576 0.42507547 0.19679096 prediction 0.634319801047628 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625321 chr12:56625323 nonsynonymous SNV 0.043 0 23 hm5C_associated_SNPs_52342 0 0 1 0 2 cytosol 0.500231305764512 0.500230991913397 0 6.27702230637794e-07 hm5C_site_47694 DeepMRMD:0;iRNA_m5C:6.27702230637794e-07 47695 chr10 50854680 50854680 1 + G T PAAD 50854678 + 50854658 50854698 41 CTCCTTCACGGCGGAGGCTACAGCAAGAACGGGGCCAATCG CTCCTTCACGGCGGAGGCTACATCAAGAACGGGGCCAATCG < 41bp 0.82343297431574 0.506285702015155 0.44699606 0.20161444 prediction 0.63429454460117 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50854678 chr10:50854680 nonsynonymous SNV 0.811 2 23 hm5C_associated_SNPs_52343 0 0 0 0 1 unknown 0.500231644056001 0.500231648220266 0 0 hm5C_site_47695 DeepMRMD:0;iRNA_m5C:0 47696 chr10 134158049 134158049 1 + G T PRAD 134158046 + 134158026 134158066 41 TGAACCTAAGACACTGCCCTCTGGAATTCCCTCCTCAGCTC TGAACCTAAGACACTGCCCTCTGTAATTCCCTCCTCAGCTC < 41bp 0.817144106364582 0.452865696936338 0.36359158 0.08529043 prediction 0.634288212729164 Functional Loss - LRRC27 ENSG00000148814 CDS Human protein_coding chr10:134158046 chr10:134158049 stopgain 0.975 1 24 hm5C_associated_SNPs_52344 0 0 1 0 1 Nucleus 0.500231643800424 0.500231643921093 0 0 hm5C_site_47696 DeepMRMD:0;iRNA_m5C:0 47697 chr4 81124488 81124488 1 + G T UCEC 81124486 + 81124466 81124506 41 CCTCGCTGTGTCTGCCCGCGCAGAACTGGTGCGCCAAGTGC CCTCGCTGTGTCTGCCCGCGCATAACTGGTGCGCCAAGTGC < 41bp 0.819574390147739 0.502437506669549 0.14187938 0.075121135 prediction 0.63427376695638 Functional Loss - PRDM8 ENSG00000152784 CDS Human protein_coding chr4:81124486 chr4:81124488 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52345 0 0 0 0 0 exosome 0.500231643921004 0.500231643920792 0 4.2321701698711e-13 hm5C_site_47697 DeepMRMD:0;iRNA_m5C:4.2321701698711e-13 47698 chr12 57843575 57843575 1 + A T LUSC 57843571 + 57843551 57843591 41 GAGGGCTACGCCATGAACTTCTGCATAGGGCAGTGCCCACT GAGGGCTACGCCATGAACTTCTGCTTAGGGCAGTGCCCACT < 41bp 0.81712345320615 0.498547483484101 0.4638766 0.18169811 prediction 0.634246906412301 Functional Loss - INHBC ENSG00000175189 CDS Human protein_coding chr12:57843571 chr12:57843575 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_52346 0 0 0 0 0 exosome 0.50023164370906 0.500231643886729 0 0 hm5C_site_47698 DeepMRMD:0;iRNA_m5C:0 47699 chr1 168549392 168549392 1 + G T UCEC 168549389 + 168549369 168549409 41 AGAATCAAGACCTACACCATCACGGAAGGCTCCTTGAGAGC AGAATCAAGACCTACACCATCACTGAAGGCTCCTTGAGAGC < 41bp 0.873762629910653 0.556650441279485 0.26086646 0.087670505 prediction 0.634224377262334 Functional Loss - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168549389 chr1:168549392 synonymous SNV . 0 24 hm5C_associated_SNPs_52347 0 0 0 0 2 Dendrite 0.500231643921092 0.500231643921496 0 0 hm5C_site_47699 DeepMRMD:0;iRNA_m5C:0 47700 chr22 41865186 41865186 1 + G T LUAD 41865184 + 41865164 41865204 41 GCCTACTGGTGACTCGGCTGCAGGTGAGCGAGCTCAGGGAC GCCTACTGGTGACTCGGCTGCATGTGAGCGAGCTCAGGGAC < 41bp 0.827275302006288 0.510168595258631 0.9100392 0.323968 prediction 0.634213413495313 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41865184 chr22:41865186 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_52348 0 0 1 0 1 chromatin 0.499570525937802 0.500231389503494 0.8200784 0 hm5C_site_47700 DeepMRMD:0.8200784;iRNA_m5C:0 47701 chr20 19870252 19870252 1 + G T LUSC 19870250 + 19870230 19870270 41 AGCCTCGCTGGGGGAAATGACAGCTTGGACCATGGGCGCCC AGCCTCGCTGGGGGAAATGACATCTTGGACCATGGGCGCCC < 41bp 0.823077994938724 0.505973572834074 0.30395293 0.17267036 prediction 0.6342088442093 Functional Loss - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19870250 chr20:19870252 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_52349 0 0 0 0 1 Nucleus 0.500231643921 0.500231643920865 0 2.69118061169138e-13 hm5C_site_47701 DeepMRMD:0;iRNA_m5C:2.69118061169138e-13 47702 chr17 79886165 79886165 1 + G T rs530954880 79886162 + 79886142 79886182 41 ACGTGTACCCAGAGCTCCGCCCGGGGGAGACTTCGCTGCTT ACGTGTACCCAGAGCTCCGCCCGTGGGAGACTTCGCTGCTT < 41bp 0.817102507269315 0.458136288271446 0.9290823 0.8837669 prediction 0.63420501453863 Functional Loss - MAFG-AS1 ENSG00000265688 ncRNA_exonic Human antisense chr17:79886162 chr17:79886165 . . 0 24 hm5C_associated_SNPs_52350 0 0 0 0 0 unknown 0.50023164437402 0.500231643921092 0.0906308 9.05856056832022e-10 hm5C_site_47702 DeepMRMD:0.0906308;iRNA_m5C:9.05856056832022e-10 47703 chr11 9430143 9430143 1 + G T UCEC 9430140 + 9430120 9430160 41 AAGAAGATCGCCATTGTATTCGAGAAAATATTGTAGAAGCC AAGAAGATCGCCATTGTATTCGATAAAATATTGTAGAAGCC < 41bp 0.817101242745149 0.482138950402232 0.21697554 0.07484615 prediction 0.634202485490297 Functional Loss - IPO7 ENSG00000205339 CDS Human protein_coding chr11:9430140 chr11:9430143 stopgain 1.000 1 24 hm5C_associated_SNPs_52351 0 0 1 0 1 Cytosol 0.500231643921253 0.500231643997436 0 0 hm5C_site_47703 DeepMRMD:0;iRNA_m5C:0 47704 chr5 33937435 33937435 1 + G T LUSC 33937433 + 33937413 33937453 41 AGCCACCGGACCCGAGGACACGGCCGGGGCGACTGCTGCGG AGCCACCGGACCCGAGGACACGTCCGGGGCGACTGCTGCGG < 41bp 0.827323301952358 0.51023244564816 0.14904085 0.09510893 prediction 0.634181712608395 Functional Loss - RXFP3 ENSG00000182631 CDS Human protein_coding chr5:33937433 chr5:33937435 nonsynonymous SNV 0.090 1 23 hm5C_associated_SNPs_52352 0 0 0 0 0 unknown 0.500232389248988 0.500231644139468 0 1.490219041278e-06 hm5C_site_47704 DeepMRMD:0;iRNA_m5C:1.490219041278e-06 47705 chr19 55377854 55377854 1 + G T STAD 55377852 + 55377832 55377872 41 TGTAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAATA TGTAATGGACCAAGAGCCTGCGTGGGACAGAACAGTGAATA < 41bp 0.817085515625194 0.498108640992534 0.90493226 0.51883644 prediction 0.634171031250389 Functional Loss - KIR3DL2 ENSG00000167633;ENSG00000240403 CDS Human other chr19:55377852 chr19:55377854 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_52353 0 0 0 0 2 exosome 0.500249228699737 0.500231642311481 0.77219164 3.51727765111054e-05 hm5C_site_47705 DeepMRMD:0.77219164;iRNA_m5C:3.51727765111054e-05 47706 chr1 63300503 63300503 1 + A C DLBC 63300499 + 63300479 63300519 41 TGCCAATCTTTTGTAGATGTCAGCATAAAGGATTTCCCTCT TGCCAATCTTTTGTAGATGTCAGCCTAAAGGATTTCCCTCT < 41bp 0.817084246149422 0.440358855912489 0.17254457 0.21325663 prediction 0.634168492298845 Functional Loss - ATG4C ENSG00000125703 CDS Human protein_coding chr1:63300499 chr1:63300503 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_52354 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47706 DeepMRMD:0;iRNA_m5C:0 47707 chr9 35044921 35044921 1 + G T GBM 35044918 + 35044898 35044938 41 AAGGCAGAGGCCCCACTCTCCCAGAGATGGACTGTCCCAGA AAGGCAGAGGCCCCACTCTCCCATAGATGGACTGTCCCAGA < 41bp 0.81708367819561 0.451706129904624 0.9096992 0.557886 prediction 0.63416735639122 Functional Loss - C9orf131 ENSG00000174038 CDS Human protein_coding chr9:35044918 chr9:35044921 nonsynonymous SNV 0.259 0 24 hm5C_associated_SNPs_52355 0 0 0 0 0 exosome 0.500231641722245 0.500231643921092 0.7036264 0 hm5C_site_47707 DeepMRMD:0.7036264;iRNA_m5C:0 47708 chr7 106509334 106509334 1 + G T LUSC 106509332 + 106509312 106509352 41 GGTAAAGCTCCAGCACTGTCCAGCAAGGCCTCTGCAGAGTC GGTAAAGCTCCAGCACTGTCCATCAAGGCCTCTGCAGAGTC < 41bp 0.817072561696272 0.497187301183184 0.07799554 0.078223854 prediction 0.634145123392544 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106509332 chr7:106509334 nonsynonymous SNV 0.120 0 23 hm5C_associated_SNPs_52356 0 0 1 0 0 Cytosol 0.500231637000997 0.500231643987079 0 0 hm5C_site_47708 DeepMRMD:0;iRNA_m5C:0 47709 chr6 26240935 26240935 1 + G T LUSC 26240932 + 26240912 26240952 41 GTTGTCTACGCGCTCAAGCGCCAGGGACGCACTCTGTACGG GTTGTCTACGCGCTCAAGCGCCATGGACGCACTCTGTACGG < 41bp 0.817066411425831 0.452807209371092 0.88114864 0.06074971 prediction 0.634132822851662 Functional Loss - HIST1H4F ENSG00000198327 CDS Human other chr6:26240932 chr6:26240935 nonsynonymous SNV 0.745 2 24 hm5C_associated_SNPs_52357 0 0 0 0 0 exosome 0.500231643785444 0.500232146682833 0.76229728 0 hm5C_site_47709 DeepMRMD:0.76229728;iRNA_m5C:0 47710 chr2 176983930 176983930 1 + G T COAD 176983927 + 176983907 176983947 41 TGAGCCGAGAGAACCGGATCCGAGAACTGACCGCCAACCTC TGAGCCGAGAGAACCGGATCCGATAACTGACCGCCAACCTC < 41bp 0.859646513744365 0.542582438171469 0.6986421 0.13222146 prediction 0.634128151145792 Functional Loss - HOXD10 ENSG00000128710 CDS Human protein_coding chr2:176983927 chr2:176983930 stopgain 1.000 1 24 hm5C_associated_SNPs_52358 0 0 1 0 0 exosome 0.500226216821731 0.500231643922029 0.3972842 0 hm5C_site_47710 DeepMRMD:0.3972842;iRNA_m5C:0 47711 chr10 45938942 45938942 1 + G T SKCM 45938939 + 45938919 45938959 41 GACCCGGAGCTGCAGGACTTCGTGAACGATGTCTACGTGTA GACCCGGAGCTGCAGGACTTCGTTAACGATGTCTACGTGTA < 41bp 0.817062960989897 0.451722538488124 0.5066712 0.23871756 prediction 0.634125921979794 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938939 chr10:45938942 synonymous SNV . 0 24 hm5C_associated_SNPs_52359 0 0 0 0 2 Cytosol 0.500231643475081 0.500231643987048 0.0133424 0 hm5C_site_47711 DeepMRMD:0.0133424;iRNA_m5C:0 47712 chr12 6437022 6437022 1 + G T LUSC 6437020 + 6437000 6437040 41 ATTGAGGGGGCCGAGGAGCCCCGGGACAGCAGGCCACGGAA ATTGAGGGGGCCGAGGAGCCCCTGGACAGCAGGCCACGGAA < 41bp 0.820005361827889 0.502946488605177 0.8958068 0.50863403 prediction 0.634117746445424 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6437020 chr12:6437022 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_52360 0 0 0 0 1 Nucleus 0.50023164392109 0.500231643921092 0.77434554 0 hm5C_site_47712 DeepMRMD:0.77434554;iRNA_m5C:0 47713 chr11 71932733 71932733 1 + G T COAD 71932730 + 71932710 71932750 41 TGCAGCCATGCATGTGAATGCTGGTGAGATGCTTCATGGGA TGCAGCCATGCATGTGAATGCTGTTGAGATGCTTCATGGGA < 41bp 0.817049936686612 0.452532752581197 0.14434773 0.13921028 prediction 0.634099873373223 Functional Loss - FOLR2 ENSG00000165457 CDS Human protein_coding chr11:71932730 chr11:71932733 nonsynonymous SNV 0.020 0 24 hm5C_associated_SNPs_52361 0 0 0 0 0 Cytosol 0.500232008895525 0.500254162907142 0 0 hm5C_site_47713 DeepMRMD:0;iRNA_m5C:0 47714 chr14 101201182 101201182 1 + G T UCEC 101201179 + 101201159 101201199 41 GCCGTCAACATCATCTTCCCCGAGAAGATCGACATGACCAC GCCGTCAACATCATCTTCCCCGATAAGATCGACATGACCAC < 41bp 0.865140774967023 0.548102894508549 0.06065327 0.06579974 prediction 0.634075760916948 Functional Loss - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101201179 chr14:101201182 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52362 0 0 1 0 0 Endoplasmic reticulum 0.50023164423548 0.500231643921092 0 6.28774809996457e-10 hm5C_site_47714 DeepMRMD:0;iRNA_m5C:6.28774809996457e-10 47715 chr22 33245471 33245471 1 + G T LUAD 33245468 + 33245448 33245488 41 CCAAGGTGGTGGGGAAGAAGCTGGTAAAGGAGGGGCCCTTC CCAAGGTGGTGGGGAAGAAGCTGTTAAAGGAGGGGCCCTTC < 41bp 0.877265373603072 0.5602299655001 0.6705385 0.5403806 prediction 0.634070816205942 Functional Loss - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33245468 chr22:33245471 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52363 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.2603158 0 hm5C_site_47715 DeepMRMD:0.2603158;iRNA_m5C:0 47716 chr16 84695577 84695577 1 + G T UCEC 84695574 + 84695554 84695594 41 TGGGAGAACACTGCCTTCTCCAAGACCGTGCAGGTGTACGA TGGGAGAACACTGCCTTCTCCAATACCGTGCAGGTGTACGA < 41bp 0.817029066271315 0.461295782425147 0.33709383 0.047685534 prediction 0.634058132542629 Functional Loss - KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84695574 chr16:84695577 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_52364 0 0 1 0 0 chromatin 0.500231643951426 0.500231643921084 0 6.06834582583815e-11 hm5C_site_47716 DeepMRMD:0;iRNA_m5C:6.06834582583815e-11 47717 chr6 43624424 43624424 1 + G T SARC 43624421 + 43624401 43624441 41 AGGCTGACCTGGACCCCTCCCTGGATTTCATGGACTCCTTG AGGCTGACCTGGACCCCTCCCTGTATTTCATGGACTCCTTG < 41bp 0.872132108423355 0.555111552684876 0.19875208 0.054282844 prediction 0.634041111476958 Functional Loss - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43624421 chr6:43624424 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52365 0 0 0 0 1 chromatin 0.5002316439211 0.500231643921092 0 1.55431223447522e-14 hm5C_site_47717 DeepMRMD:0;iRNA_m5C:1.55431223447522e-14 47718 chr1 203008326 203008326 1 + G T LUAD 203008323 + 203008303 203008343 41 GCCGGCTCCAGGATGCCATACACGAGCGGGACCAGCTCCAG GCCGGCTCCAGGATGCCATACACTAGCGGGACCAGCTCCAG < 41bp 0.817001149564021 0.45336293712588 0.19928685 0.13322598 prediction 0.634002299128042 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203008323 chr1:203008326 stopgain 0.963 1 24 hm5C_associated_SNPs_52366 0 0 1 0 1 chromatin 0.500231643921091 0.500231643921092 0 0 hm5C_site_47718 DeepMRMD:0;iRNA_m5C:0 47719 chrX 55650415 55650415 1 + G T STAD 55650412 + 55650392 55650432 41 ACCCCAATATCCTGTGCCCCCTTGGCAGCCAGGAGGCCCCA ACCCCAATATCCTGTGCCCCCTTTGCAGCCAGGAGGCCCCA < 41bp 0.816985280070768 0.458587350860401 0.007343322 0.0076848865 prediction 0.633970560141535 Functional Loss - FOXR2 ENSG00000189299 CDS Human protein_coding chrX:55650412 chrX:55650415 nonsynonymous SNV 0.012 4 24 hm5C_associated_SNPs_52367 0 0 0 0 0 unknown 0.500231643921092 0.500231647499531 0 0 hm5C_site_47719 DeepMRMD:0;iRNA_m5C:0 47720 chr15 23811593 23811593 1 + G T HNSC 23811590 + 23811570 23811610 41 GCCGCTGGGTTGCATCTGCCCCCGAGGCTCCTCTACAGAGC GCCGCTGGGTTGCATCTGCCCCCTAGGCTCCTCTACAGAGC < 41bp 0.816980334548233 0.4485326723619 0.02184406 0.003081262 prediction 0.633960669096465 Functional Loss - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811590 chr15:23811593 stopgain 0.004 0 24 hm5C_associated_SNPs_52368 0 0 1 0 0 chromatin 0.500231644085957 0.500231643920922 0 3.30069527265664e-10 hm5C_site_47720 DeepMRMD:0;iRNA_m5C:3.30069527265664e-10 47721 chr8 13425249 13425249 1 + A C UCEC 13425245 + 13425225 13425265 41 CCCGTATTGGAGAAGCACATCAAGACTTTCCCAGGCTTTCA CCCGTATTGGAGAAGCACATCAAGCCTTTCCCAGGCTTTCA < 41bp 0.816978391423354 0.459796664751005 0.23275897 0.12045273 prediction 0.633956782846709 Functional Loss - C8orf48 ENSG00000164743 CDS Human protein_coding chr8:13425245 chr8:13425249 nonsynonymous SNV 0.563 0 25 hm5C_associated_SNPs_52369 0 0 0 0 0 exosome 0.500231643921092 0.500231643921016 0 1.53432822003197e-13 hm5C_site_47721 DeepMRMD:0;iRNA_m5C:1.53432822003197e-13 47722 chr2 3750004 3750004 1 + G T UCEC 3750001 + 3749981 3750021 41 ATAGCCTGACCCTAGAGCTCCAAGATGTCATCACTCACGCC ATAGCCTGACCCTAGAGCTCCAATATGTCATCACTCACGCC < 41bp 0.816977351692481 0.444202047283832 0.05320871 0.030891031 prediction 0.633954703384963 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3750001 chr2:3750004 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_52370 0 0 0 0 1 unknown 0.500231643306291 0.500231643921092 0 0 hm5C_site_47722 DeepMRMD:0;iRNA_m5C:0 47723 chr3 132056339 132056339 1 + G T UCEC 132056336 + 132056316 132056356 41 TCAGGAACTGCCCTCGTTTTCAAGAACTTGAGAGTGAGACT TCAGGAACTGCCCTCGTTTTCAATAACTTGAGAGTGAGACT < 41bp 0.816974388901713 0.450605053083157 0.39677164 0.06639919 prediction 0.633948777803426 Functional Loss - ACPP ENSG00000014257 CDS Human protein_coding chr3:132056336 chr3:132056339 stopgain 0.974 1 24 hm5C_associated_SNPs_52371 0 0 0 0 2 Endoplasmic reticulum 0.500231642020119 0.500231643921091 0 0 hm5C_site_47723 DeepMRMD:0;iRNA_m5C:0 47724 chr20 37378814 37378814 1 + G T BLCA 37378811 + 37378791 37378831 41 TACCACAATAAGCCAAAGAACTCGATGTGCAGTGGGCTAAT TACCACAATAAGCCAAAGAACTCTATGTGCAGTGGGCTAAT < 41bp 0.864668062537088 0.547695871749243 0.550255 0.46852592 prediction 0.633944381575692 Functional Loss - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37378811 chr20:37378814 synonymous SNV . 0 24 hm5C_associated_SNPs_52372 0 0 1 0 1 chromatin 0.500231643921092 0.500231643950442 0.10051 0 hm5C_site_47724 DeepMRMD:0.10051;iRNA_m5C:0 47725 chr12 102590817 102590817 1 + C A UCEC 102590820 - 102590800 102590840 41 TTCAGAATACTGAATCAACACAAGAAAAGAGAGAAATTGGG TTCAGAATACTGAATCAACACAATAAAAGAGAGAAATTGGG < 41bp 0.834345435668743 0.517390337662405 0.28544685 0.33164415 prediction 0.633910196012677 Functional Loss - PMCH ENSG00000183395 CDS Human protein_coding chr12:102590820 chr12:102590817 stopgain 1.000 1 24 hm5C_associated_SNPs_52373 0 0 0 0 1 exosome 0.500231644784727 0.500231643921103 0 1.7272481223074e-09 hm5C_site_47725 DeepMRMD:0;iRNA_m5C:1.7272481223074e-09 47726 chr7 2473414 2473414 1 + G T HNSC 2473411 + 2473391 2473431 41 GCCAGCAGCTGGGAGGAGGACTGGTTCGCCAAGATCCCCCT GCCAGCAGCTGGGAGGAGGACTGTTTCGCCAAGATCCCCCT < 41bp 0.816949148215375 0.462739674948104 0.3813262 0.26577795 prediction 0.63389829643075 Functional Loss - CHST12 ENSG00000136213 CDS Human protein_coding chr7:2473411 chr7:2473414 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52374 0 0 0 0 0 nucleolus 0.500231643918575 0.500231643942536 0 0 hm5C_site_47726 DeepMRMD:0;iRNA_m5C:0 47727 chr4 175898990 175898990 1 + G T rs200104149 175898987 + 175898967 175899007 41 CACCCTCCCAGAGTCAACCTCGGGTGATGCCTTCTCAGAGT CACCCTCCCAGAGTCAACCTCGGTTGATGCCTTCTCAGAGT < 41bp 0.816946716949247 0.454650226118542 0.5242063 0.08486915 prediction 0.633893433898495 Functional Loss - ADAM29 ENSG00000168594 CDS Human protein_coding chr4:175898987 chr4:175898990 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_52375 0 0 0 0 0 exosome 0.500231643921092 0.500231643489004 0.0484126 8.64177840398384e-10 hm5C_site_47727 DeepMRMD:0.0484126;iRNA_m5C:8.64177840398384e-10 47728 chrX 38525426 38525426 1 + G T LUAD 38525423 + 38525403 38525443 41 GAGTCTGGGGCAAACTTACTCTGGGCACCTATATCTCCCTT GAGTCTGGGGCAAACTTACTCTGTGCACCTATATCTCCCTT < 41bp 0.875015492983319 0.558083039630972 0.3908826 0.14143056 prediction 0.633864906704693 Functional Loss - TSPAN7 ENSG00000156298;ENSG00000250349 CDS Human other chrX:38525423 chrX:38525426 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52376 0 0 1 0 1 Ribosome 0.500231643921067 0.500231644243282 0 0 hm5C_site_47728 DeepMRMD:0;iRNA_m5C:0 47729 chr1 45226293 45226293 1 + G T UCEC 45226290 + 45226270 45226310 41 ATCAGGGCCCTGGGACAGAACAAGGCTCACACCCCGTTCCG ATCAGGGCCCTGGGACAGAACAATGCTCACACCCCGTTCCG < 41bp 0.882537670681837 0.565616359372744 0.90251696 0.28878534 prediction 0.633842622618186 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45226290 chr1:45226293 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52377 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643571265 0.80503392 6.99655444691416e-10 hm5C_site_47729 DeepMRMD:0.80503392;iRNA_m5C:6.99655444691416e-10 47730 chr10 63212885 63212885 1 + G T rs181800713 63212882 + 63212862 63212902 41 CGTCCCCTTGCCTGCGCCCCCAGGACCCTGCCGGGCGTGCC CGTCCCCTTGCCTGCGCCCCCAGTACCCTGCCGGGCGTGCC < 41bp 0.849714078125734 0.532797947444398 0.84285486 0.22472706 prediction 0.633832261362671 Functional Loss - TMEM26-AS1 ENSG00000237233 ncRNA_exonic Human antisense chr10:63212882 chr10:63212885 . . 0 24 hm5C_associated_SNPs_52378 0 0 0 0 0 unknown 0.50023164392109 0.500231643921092 0.68570972 0 hm5C_site_47730 DeepMRMD:0.68570972;iRNA_m5C:0 47731 chr6 50683113 50683113 1 + G T LUAD 50683110 + 50683090 50683130 41 TACTACCAGCAGATCCACCACGGGGAGCCCACCGACTTTAT TACTACCAGCAGATCCACCACGGTGAGCCCACCGACTTTAT < 41bp 0.87704371693999 0.560137699852184 0.9341873 0.6119166 prediction 0.63381203417561 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683110 chr6:50683113 synonymous SNV . 0 24 hm5C_associated_SNPs_52379 0 0 0 0 0 unknown 0.500231643921092 0.50023164242076 0.6445414 3.00066504976826e-09 hm5C_site_47731 DeepMRMD:0.6445414;iRNA_m5C:3.00066504976826e-09 47732 chr5 33457488 33457488 1 + G T LUAD 33457485 + 33457465 33457505 41 TCCAAGAGGAAGCTAAAAACCGAGATCATAGGAAAATTGGC TCCAAGAGGAAGCTAAAAACCGATATCATAGGAAAATTGGC < 41bp 0.816889654097657 0.473887124528978 0.4363864 0.118524194 prediction 0.633779308195315 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33457485 chr5:33457488 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52380 0 0 1 0 0 Nucleus 0.500231647139918 0.50023163584536 0 2.25891154670421e-08 hm5C_site_47732 DeepMRMD:0;iRNA_m5C:2.25891154670421e-08 47733 chr20 30072005 30072005 1 + G T LUAD 30072002 + 30071982 30072022 41 GTGTTCGACTGTAAATTCATCGAGACATCCGCCACGCTGCA GTGTTCGACTGTAAATTCATCGATACATCCGCCACGCTGCA < 41bp 0.816854131556088 0.450924354857833 0.38616323 0.058763564 prediction 0.633708263112176 Functional Loss - REM1 ENSG00000088320 CDS Human protein_coding chr20:30072002 chr20:30072005 nonsynonymous SNV 0.960 5 24 hm5C_associated_SNPs_52381 0 0 0 0 1 exosome 0.500231527834144 0.500231643921093 0 0 hm5C_site_47733 DeepMRMD:0;iRNA_m5C:0 47734 chr18 61654424 61654424 1 + G T UCEC 61654421 + 61654401 61654441 41 CCGGTGCAGCAGAATGGAGCCAAGATTCTGTGCAGACCACC CCGGTGCAGCAGAATGGAGCCAATATTCTGTGCAGACCACC < 41bp 0.816852379863341 0.463028671562892 0.29617232 0.25369263 prediction 0.633704759726682 Functional Loss - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61654421 chr18:61654424 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_52382 0 0 0 0 0 nucleus 0.500233090521339 0.500231644707895 0 2.89162688726918e-06 hm5C_site_47734 DeepMRMD:0;iRNA_m5C:2.89162688726918e-06 47735 chr22 19119619 19119619 1 + C A LUSC 19119622 - 19119602 19119642 41 CGCAGGTCAGGTTCTTGGAGCGCGGGAAGTCCACACGGTGC CGCAGGTCAGGTTCTTGGAGCGCTGGAAGTCCACACGGTGC < 41bp 0.816849494815481 0.463045216365964 0.83051825 0.3458228 prediction 0.633698989630962 Functional Loss - TSSK2 ENSG00000206203 CDS Human protein_coding chr22:19119622 chr22:19119619 nonsynonymous SNV 0.847 4 24 hm5C_associated_SNPs_52383 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0.6610365 0 hm5C_site_47735 DeepMRMD:0.6610365;iRNA_m5C:0 47736 chr11 55322412 55322412 1 + G T LUAD 55322409 + 55322389 55322429 41 ACAGGGGGCCTCTTGCATTCCATGATACAAATTCTTTTTAC ACAGGGGGCCTCTTGCATTCCATTATACAAATTCTTTTTAC < 41bp 0.860547175730604 0.543697901071296 0.17580944 0.14361149 prediction 0.633698549318617 Functional Loss - OR4C15 ENSG00000181939 CDS Human protein_coding chr11:55322409 chr11:55322412 nonsynonymous SNV 0.130 0 24 hm5C_associated_SNPs_52384 0 0 0 0 0 unknown 0.500231644112778 0.500231643921092 0 3.83372000811733e-10 hm5C_site_47736 DeepMRMD:0;iRNA_m5C:3.83372000811733e-10 47737 chr10 12111054 12111054 1 + G T UCEC 12111052 + 12111032 12111072 41 CATGGCCTCTGCTACTGCGGCAGCAGCACGACGGGGCCTCG CATGGCCTCTGCTACTGCGGCATCAGCACGACGGGGCCTCG < 41bp 0.816843002958434 0.485790286145154 0.78127956 0.34187424 prediction 0.633686005916868 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12111052 chr10:12111054 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_52385 0 0 1 0 0 Endoplasmic reticulum 0.500231643964867 0.5002316440564 0.56255912 0 hm5C_site_47737 DeepMRMD:0.56255912;iRNA_m5C:0 47738 chr5 56207236 56207236 1 + A C UCEC 56207232 + 56207212 56207252 41 ACAGCAAAGTACCTTTAAACCAGAAGAAATTCTTTACAAGA ACAGCAAAGTACCTTTAAACCAGACGAAATTCTTTACAAGA < 41bp 0.816836647109658 0.438357496149637 0.554418 0.3365909 prediction 0.633673294219316 Functional Loss - SETD9 ENSG00000155542 CDS Human protein_coding chr5:56207232 chr5:56207236 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_52386 0 0 1 0 0 Cytosol 0.500237983792373 0.500231678417153 0.108836 1.26107504416773e-05 hm5C_site_47738 DeepMRMD:0.108836;iRNA_m5C:1.26107504416773e-05 47739 chr11 118220490 118220490 1 + G T COAD 118220487 + 118220467 118220507 41 TGGTTAAGGTGTATGACTATCAAGAAGATGGTTCGGTACTT TGGTTAAGGTGTATGACTATCAATAAGATGGTTCGGTACTT < 41bp 0.861181989258597 0.544358579295504 0.71113217 0.17464358 prediction 0.633646819926185 Functional Loss - CD3G ENSG00000160654 CDS Human protein_coding chr11:118220487 chr11:118220490 stopgain 0.500 0 24 hm5C_associated_SNPs_52387 0 0 0 0 1 Endoplasmic reticulum 0.500231644857256 0.500231643967769 0.42226434 1.77897518938153e-09 hm5C_site_47739 DeepMRMD:0.42226434;iRNA_m5C:1.77897518938153e-09 47740 chr2 11053925 11053925 1 + G T LUAD 11053922 + 11053902 11053942 41 CAACCTCCCTCCAGAGCCTGCGGGGAAGGAGGCGCCGAGCT CAACCTCCCTCCAGAGCCTGCGGTGAAGGAGGCGCCGAGCT < 41bp 0.868591430407034 0.551770479242689 0.9212307 0.71769947 prediction 0.633641902328689 Functional Loss - KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11053922 chr2:11053925 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_52388 0 0 0 0 0 exosome 0.500231643921064 0.500231643921092 0.40706246 0 hm5C_site_47740 DeepMRMD:0.40706246;iRNA_m5C:0 47741 chr1 150131492 150131492 1 + A C UCEC 150131488 + 150131468 150131508 41 AGGGACTGGGAGATGGGAAGCGAAAGGCCAAGGACCCCCCT AGGGACTGGGAGATGGGAAGCGAACGGCCAAGGACCCCCCT < 41bp 0.882888783804 0.566072641010576 0.8039018 0.4436195 prediction 0.633632285586848 Functional Loss - PLEKHO1 ENSG00000023902 CDS Human protein_coding chr1:150131488 chr1:150131492 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_52389 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.6078036 0 hm5C_site_47741 DeepMRMD:0.6078036;iRNA_m5C:0 47742 chr16 20435294 20435294 1 + G T LUSC 20435292 + 20435272 20435312 41 TGGAACACGACTGACACTGGCTGGGTGAAGGCAGCCTGGAC TGGAACACGACTGACACTGGCTTGGTGAAGGCAGCCTGGAC < 41bp 0.816805105498864 0.487210137365041 0.32187665 0.036842883 prediction 0.633610210997728 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20435292 chr16:20435294 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52390 0 0 1 0 2 cytosol 0.500231643921095 0.500231643921092 0 5.55111512312578e-15 hm5C_site_47742 DeepMRMD:0;iRNA_m5C:5.55111512312578e-15 47743 chr1 152760048 152760048 1 + G T UCEC 152760046 + 152760026 152760066 41 GGTCCCACCGTCACAGACCCCAGAGCTCTGACTGCTGCAGC GGTCCCACCGTCACAGACCCCATAGCTCTGACTGCTGCAGC < 41bp 0.829538375525474 0.51276421395617 0.41895598 0.060499072 prediction 0.633548323138608 Functional Loss - LCE1E ENSG00000186226 CDS Human protein_coding chr1:152760046 chr1:152760048 nonsynonymous SNV 0.210 0 23 hm5C_associated_SNPs_52391 0 0 0 0 0 unknown 0.500231643824352 0.500231650054451 0 0 hm5C_site_47743 DeepMRMD:0;iRNA_m5C:0 47744 chr6 27115202 27115202 1 + G T BLCA 27115199 + 27115179 27115219 41 ACGAGGAGCTCAACAAGCTGCTGGGCAAAGTCACCATCGCG ACGAGGAGCTCAACAAGCTGCTGTGCAAAGTCACCATCGCG < 41bp 0.81676412474949 0.46769501339679 0.16180757 0.040234417 prediction 0.63352824949898 Functional Loss - HIST1H2AH ENSG00000184825 CDS Human other chr6:27115199 chr6:27115202 nonsynonymous SNV 0.969 4 24 hm5C_associated_SNPs_52392 0 0 1 0 0 cytosol 0.500231637640516 0.500232018840521 0 0 hm5C_site_47744 DeepMRMD:0;iRNA_m5C:0 47745 chr10 82363454 82363454 1 + A T LUSC 82363450 + 82363430 82363470 41 GGCACGGTCGCTGGCCTCAGCTCCATGTTCCGGGAGCTTGG GGCACGGTCGCTGGCCTCAGCTCCTTGTTCCGGGAGCTTGG < 41bp 0.81676398776919 0.489209641034555 0.9198115 0.33476198 prediction 0.63352797553838 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82363450 chr10:82363454 nonsynonymous SNV 0.838 0 25 hm5C_associated_SNPs_52393 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0.839623 2.22044604925031e-16 hm5C_site_47745 DeepMRMD:0.839623;iRNA_m5C:2.22044604925031e-16 47746 chr1 110882515 110882515 1 + G T OV 110882513 + 110882493 110882533 41 GCCGCCTCCTCAGCTCCCGGCGGCGGGGACGGCGCGGAATA GCCGCCTCCTCAGCTCCCGGCGTCGGGGACGGCGCGGAATA < 41bp 0.820107585093218 0.503350512254895 0.8670589 0.45417395 prediction 0.633514145676646 Functional Loss - RBM15 ENSG00000162775 CDS Human protein_coding chr1:110882513 chr1:110882515 nonsynonymous SNV 0.949 1 23 hm5C_associated_SNPs_52394 0 0 1 0 0 Nucleus 0.500231644181582 0.500231643918872 0.7341178 5.25419707742003e-10 hm5C_site_47746 DeepMRMD:0.7341178;iRNA_m5C:5.25419707742003e-10 47747 chr19 50302620 50302620 1 + G T LUAD 50302618 + 50302598 50302638 41 TGGTTCGGGCCTGCAACCAGCTGGGCCAGTTCCTGCAGCAC TGGTTCGGGCCTGCAACCAGCTTGGCCAGTTCCTGCAGCAC < 41bp 0.828351840116214 0.511600124015927 0.9074614 0.56748706 prediction 0.633503432200575 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302618 chr19:50302620 synonymous SNV . 0 23 hm5C_associated_SNPs_52395 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.67994868 0 hm5C_site_47747 DeepMRMD:0.67994868;iRNA_m5C:0 47748 chr2 178977514 178977514 1 + A C LUSC 178977510 + 178977490 178977530 41 TTCGCCCGCAGCTCACAGGCCTGCAGGGCCATGGAGGAGAT TTCGCCCGCAGCTCACAGGCCTGCCGGGCCATGGAGGAGAT < 41bp 0.890001422988517 0.573255725255993 0.11446592 0.054014742 prediction 0.633491395465049 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178977510 chr2:178977514 synonymous SNV . 0 25 hm5C_associated_SNPs_52396 0 0 1 0 1 Nucleus 0.500231643921088 0.500231643921086 0 4.88498130835069e-15 hm5C_site_47748 DeepMRMD:0;iRNA_m5C:4.88498130835069e-15 47749 chr4 9784198 9784198 1 + G T LUAD 9784196 + 9784176 9784216 41 CCGGTCCAGCTCAACTGGCACAGGGACCAGGCGGCCTCTTG CCGGTCCAGCTCAACTGGCACATGGACCAGGCGGCCTCTTG < 41bp 0.816745591911108 0.493671197584367 0.8659648 0.31957257 prediction 0.633491183822217 Functional Loss - DRD5 ENSG00000169676 CDS Human protein_coding chr4:9784196 chr4:9784198 nonsynonymous SNV 0.774 4 23 hm5C_associated_SNPs_52397 0 0 0 0 0 unknown 0.500231644006288 0.500231643921126 0.7319296 1.70324199189054e-10 hm5C_site_47749 DeepMRMD:0.7319296;iRNA_m5C:1.70324199189054e-10 47750 chr4 9784199 9784199 1 + G T LUAD 9784196 + 9784176 9784216 41 CCGGTCCAGCTCAACTGGCACAGGGACCAGGCGGCCTCTTG CCGGTCCAGCTCAACTGGCACAGTGACCAGGCGGCCTCTTG < 41bp 0.816745591911108 0.43704827669005 0.8659648 0.36786824 prediction 0.633491183822217 Functional Loss - DRD5 ENSG00000169676 CDS Human protein_coding chr4:9784196 chr4:9784199 nonsynonymous SNV 0.741 2 24 hm5C_associated_SNPs_52398 0 0 0 0 0 unknown 0.500231644006288 0.50023163585099 0.7319296 1.63105953188136e-08 hm5C_site_47750 DeepMRMD:0.7319296;iRNA_m5C:1.63105953188136e-08 47751 chr14 21464377 21464377 1 + G T UCEC 21464374 + 21464354 21464394 41 TTATGTGTTCACAGTGTCCCCATGAACTCCCTTGTCCCCAG TTATGTGTTCACAGTGTCCCCATTAACTCCCTTGTCCCCAG < 41bp 0.816740913244097 0.449609565523364 0.18347186 0.101523876 prediction 0.633481826488193 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464374 chr14:21464377 stopgain 1.000 1 24 hm5C_associated_SNPs_52399 0 0 1 0 1 Ribosome 0.500231638722157 0.500231643439953 0 0 hm5C_site_47751 DeepMRMD:0;iRNA_m5C:0 47752 chrX 22291136 22291136 1 + G T UCEC 22291133 + 22291113 22291153 41 ACAAGATGCCTGCTGGTGAACAAGAATGTGAATATAACAAA ACAAGATGCCTGCTGGTGAACAATAATGTGAATATAACAAA < 41bp 0.816722137505461 0.492190961984895 0.07474381 0.0927051 prediction 0.633444275010922 Functional Loss - ZNF645 ENSG00000175809 CDS Human protein_coding chrX:22291133 chrX:22291136 stopgain 0.040 0 24 hm5C_associated_SNPs_52400 0 0 0 0 0 unknown 0.500231644034095 0.500231643921212 0 2.2576629454818e-10 hm5C_site_47752 DeepMRMD:0;iRNA_m5C:2.2576629454818e-10 47753 chrX 47028850 47028850 1 + G T LUAD 47028847 + 47028827 47028867 41 ATCCTCGCGAGTATGGCAGCCAGGAGGGCAAGCATGACTAT ATCCTCGCGAGTATGGCAGCCAGTAGGGCAAGCATGACTAT < 41bp 0.868066912024761 0.551354172245889 0.77373815 0.30131334 prediction 0.633425479557744 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47028847 chrX:47028850 stopgain 1.000 0 24 hm5C_associated_SNPs_52401 0 0 1 0 1 Ribosome 0.500231643252616 0.500231643927039 0.5474763 0 hm5C_site_47753 DeepMRMD:0.5474763;iRNA_m5C:0 47754 chr6 27861429 27861429 1 + G T UCS 27861426 + 27861406 27861446 41 TCATCGAAGGCCATGGGCATCATGAACTCCTTCGTCAATGA TCATCGAAGGCCATGGGCATCATTAACTCCTTCGTCAATGA < 41bp 0.816702986721658 0.473748559040787 0.10137963 0.07050231 prediction 0.633405973443315 Functional Loss - HIST1H2BO ENSG00000196331 CDS Human other chr6:27861426 chr6:27861429 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_52402 0 0 1 0 0 exosome 0.500232910117837 0.500231676756904 0 2.46672186521302e-06 hm5C_site_47754 DeepMRMD:0;iRNA_m5C:2.46672186521302e-06 47755 chrX 105970514 105970514 1 + G T LUAD 105970512 + 105970492 105970532 41 TTGGCCCTCATCCAACGCGGCGGGGGCTGCACCTTCGCAGA TTGGCCCTCATCCAACGCGGCGTGGGCTGCACCTTCGCAGA < 41bp 0.816684902012459 0.476385268093453 0.914101 0.38827723 prediction 0.633369804024919 Functional Loss - RNF128 ENSG00000133135 CDS Human protein_coding chrX:105970512 chrX:105970514 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_52403 0 0 1 0 0 cytosol 0.500231643921097 0.500231843314492 0.828202 0 hm5C_site_47755 DeepMRMD:0.828202;iRNA_m5C:0 47756 chr1 235582807 235582807 1 + G T UCEC 235582804 + 235582784 235582824 41 GCAGTCAGCTGAGCAAGTTGCAAGAAGTTTCTCTGAGGAAC GCAGTCAGCTGAGCAAGTTGCAATAAGTTTCTCTGAGGAAC < 41bp 0.816681249106337 0.4547361583958 0.48419577 0.19690487 prediction 0.633362498212675 Functional Loss - TBCE ENSG00000116957 CDS Human protein_coding chr1:235582804 chr1:235582807 stopgain 0.469 0 24 hm5C_associated_SNPs_52404 0 0 1 0 3 chromatin 0.500222031415532 0.500231637139249 0 0 hm5C_site_47756 DeepMRMD:0;iRNA_m5C:0 47757 chr7 142881285 142881285 1 + G T SKCM 142881282 + 142881262 142881302 41 GACCCCAGCATGGAGGCTCACATGGGGGCCATCAAAGCTAT GACCCCAGCATGGAGGCTCACATTGGGGCCATCAAAGCTAT < 41bp 0.862290553901666 0.545622031958554 0.3574559 0.0884999 prediction 0.633337043886223 Functional Loss - TAS2R39 ENSG00000236398 CDS Human protein_coding chr7:142881282 chr7:142881285 nonsynonymous SNV 0.881 0 24 hm5C_associated_SNPs_52405 0 0 0 0 0 unknown 0.500231643921092 0.50023164385538 0 1.31423982807632e-10 hm5C_site_47757 DeepMRMD:0;iRNA_m5C:1.31423982807632e-10 47758 chr7 99722500 99722500 1 + G T UCEC 99722497 + 99722477 99722517 41 GAAGCCACCCCAAACTTGACCGAGAAGATCTTTGACCCTTG GAAGCCACCCCAAACTTGACCGATAAGATCTTTGACCCTTG < 41bp 0.816666346214327 0.460100154829222 0.32434303 0.091708064 prediction 0.633332692428654 Functional Loss - CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99722497 chr7:99722500 stopgain 0.827 0 24 hm5C_associated_SNPs_52406 0 0 1 0 0 Endoplasmic reticulum 0.500231643921091 0.500231666612402 0 0 hm5C_site_47758 DeepMRMD:0;iRNA_m5C:0 47759 chrX 56591287 56591287 1 + G T LUAD 56591285 + 56591265 56591305 41 GGGCACCACCGCCAGCTACCCAGAGTTCTGCAACTACCAGC GGGCACCACCGCCAGCTACCCATAGTTCTGCAACTACCAGC < 41bp 0.816647667295172 0.489902093670351 0.85133255 0.16357997 prediction 0.633295334590343 Functional Loss - UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56591285 chrX:56591287 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_52407 0 0 0 0 0 nucleus 0.500231646509483 0.500231646965324 0.7026651 0 hm5C_site_47759 DeepMRMD:0.7026651;iRNA_m5C:0 47760 chr19 3747947 3747947 1 + G T HNSC 3747944 + 3747924 3747964 41 GGCGAGGGCTACACAGACGGCGAGGGGGGGCCCTACACGGA GGCGAGGGCTACACAGACGGCGATGGGGGGCCCTACACGGA < 41bp 0.816646821427236 0.44237345399972 0.89077425 0.740175 prediction 0.633293642854472 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3747944 chr19:3747947 nonsynonymous SNV 0.045 2 24 hm5C_associated_SNPs_52408 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.3011985 0 hm5C_site_47760 DeepMRMD:0.3011985;iRNA_m5C:0 47761 chr3 126916189 126916189 1 + G T CHOL 126916186 + 126916166 126916206 41 CCCCCATTGAAGATTCTCAGCTGGACCCGGGCTGCTCCCGC CCCCCATTGAAGATTCTCAGCTGTACCCGGGCTGCTCCCGC < 41bp 0.85688034388984 0.540236703747226 0.47531185 0.44442686 prediction 0.633287280285228 Functional Loss - C3orf56 ENSG00000214324 CDS Human lincRNA chr3:126916186 chr3:126916189 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_52409 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_47761 DeepMRMD:0;iRNA_m5C:0 47762 chr22 40364053 40364053 1 + G T LUAD 40364051 + 40364031 40364071 41 TGTTCTTTCTCCCAGGGTCACCGGGGCAACAGCCTGGACCG TGTTCTTTCTCCCAGGGTCACCTGGGCAACAGCCTGGACCG < 41bp 0.84694968797905 0.530311757481789 0.92191875 0.77005005 prediction 0.633275860994522 Functional Loss - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40364051 chr22:40364053 nonsynonymous SNV 0.968 1 23 hm5C_associated_SNPs_52410 0 0 0 0 0 chromatin 0.500231644123414 0.500231643921093 0.3037374 4.04643429874341e-10 hm5C_site_47762 DeepMRMD:0.3037374;iRNA_m5C:4.04643429874341e-10 47763 chr19 40478462 40478462 1 + G T UCEC 40478460 + 40478440 40478480 41 AGCCATCGTGGGCTCTACCACAGGTGTGCTAAGGACACCTC AGCCATCGTGGGCTCTACCACATGTGTGCTAAGGACACCTC < 41bp 0.817763132706217 0.501132654726179 0.9045093 0.34295046 prediction 0.633260955960076 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40478460 chr19:40478462 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_52411 0 0 1 0 2 Ribosome 0.500231643517988 0.500230442492672 0.8090186 2.40205063173349e-06 hm5C_site_47763 DeepMRMD:0.8090186;iRNA_m5C:2.40205063173349e-06 47764 chr21 47549271 47549271 1 + G T LUAD 47549268 + 47549248 47549288 41 ACTCCCAGCTGGTGGCCGTGCTGGTCTACACCGCCGAGCGG ACTCCCAGCTGGTGGCCGTGCTGTTCTACACCGCCGAGCGG < 41bp 0.85167723558545 0.535055662162642 0.37884927 0.1254487 prediction 0.633243146845616 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47549268 chr21:47549271 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_52412 0 0 0 0 0 Cytosol 0.500231643913324 0.500231643914775 0 0 hm5C_site_47764 DeepMRMD:0;iRNA_m5C:0 47765 chr1 28661142 28661142 1 + G T GBM 28661139 + 28661119 28661159 41 GGACAGCCAGAAATGGGAGACAAGAACCGCCATGCCCTGGT GGACAGCCAGAAATGGGAGACAATAACCGCCATGCCCTGGT < 41bp 0.816618583056653 0.473508128821377 0.40414196 0.20281717 prediction 0.633237166113306 Functional Loss - MED18 ENSG00000130772 CDS Human protein_coding chr1:28661139 chr1:28661142 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_52413 0 0 1 0 0 Ribosome 0.500231643921115 0.500231643301964 0 1.23830345977183e-09 hm5C_site_47765 DeepMRMD:0;iRNA_m5C:1.23830345977183e-09 47766 chr8 22460156 22460156 1 + G T UCEC 22460154 + 22460134 22460174 41 CCTCCTGATGGCTCTGACCCCAGGTGAGCCCCGTGCCCAGC CCTCCTGATGGCTCTGACCCCATGTGAGCCCCGTGCCCAGC < 41bp 0.816613636569862 0.498823954989531 0.9149686 0.4216846 prediction 0.633227273139723 Functional Loss - C8orf58 ENSG00000241852 CDS Human protein_coding chr8:22460154 chr8:22460156 nonsynonymous SNV 0.371 3 23 hm5C_associated_SNPs_52414 0 0 0 0 2 exosome 0.500231643922755 0.500231645537221 0.8299372 0 hm5C_site_47766 DeepMRMD:0.8299372;iRNA_m5C:0 47767 chr1 43738640 43738640 1 + G T LUAD 43738637 + 43738617 43738657 41 GTTTGCTGGCTCTGCTGGTTCTGGTGAAACAGCTGATGAGC GTTTGCTGGCTCTGCTGGTTCTGTTGAAACAGCTGATGAGC < 41bp 0.875996719490222 0.55938440248645 0.4725985 0.3383349 prediction 0.633224634007543 Functional Loss - TMEM125 ENSG00000179178 CDS Human protein_coding chr1:43738637 chr1:43738640 nonsynonymous SNV 0.973 1 24 hm5C_associated_SNPs_52415 0 0 0 0 0 Ribosome 0.500231635085767 0.500232925571418 0 0 hm5C_site_47767 DeepMRMD:0;iRNA_m5C:0 47768 chr7 45931635 45931635 1 + G T UCEC 45931632 + 45931612 45931652 41 TTTTACCTGCCAAACTGCAACAAGAATGGATTTTATCACAG TTTTACCTGCCAAACTGCAACAATAATGGATTTTATCACAG < 41bp 0.816593174210852 0.464848745134793 0.18753129 0.11761251 prediction 0.633186348421704 Functional Loss - IGFBP1 ENSG00000146678 CDS Human protein_coding chr7:45931632 chr7:45931635 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52416 0 0 0 0 1 nucleus 0.500231641294016 0.500231643920596 0 0 hm5C_site_47768 DeepMRMD:0;iRNA_m5C:0 47769 chr7 94293271 94293271 1 + G T LUAD 94293269 + 94293249 94293289 41 CCGTGCTGCCCGTTGGGCCTCAGCAAAGCTGGAGCGCTCCC CCGTGCTGCCCGTTGGGCCTCATCAAAGCTGGAGCGCTCCC < 41bp 0.830868816159796 0.514277216853112 0.1295963 0.0877839 prediction 0.633183198613368 Functional Loss - PEG10 ENSG00000242265 CDS Human protein_coding chr7:94293269 chr7:94293271 nonsynonymous SNV 0.042 0 23 hm5C_associated_SNPs_52417 0 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0.5002316439184 0 5.38480371403693e-12 hm5C_site_47769 DeepMRMD:0;iRNA_m5C:5.38480371403693e-12 47770 chr4 71500175 71500175 1 + G T UCEC 71500172 + 71500152 71500192 41 ATAACAAGACTGATCAGACCCAAGAAACCCAGAAACCCAAC ATAACAAGACTGATCAGACCCAATAAACCCAGAAACCCAAC < 41bp 0.816578955211121 0.462548349826616 0.31258214 0.59278315 prediction 0.633157910422242 Functional Loss - ENAM ENSG00000132464 CDS Human protein_coding chr4:71500172 chr4:71500175 stopgain 0.515 0 24 hm5C_associated_SNPs_52418 0 0 0 0 0 exosome 0.50023164293061 0.500231643921092 0 0 hm5C_site_47770 DeepMRMD:0;iRNA_m5C:0 47771 chr2 15731859 15731859 1 + A C rs10153729 15731855 + 15731835 15731875 41 GCGTCCAGAAGCCCTAGGTCCCAGAGGTCCGCTCAGCGGCA GCGTCCAGAAGCCCTAGGTCCCAGCGGTCCGCTCAGCGGCA < 41bp 0.830617085926255 0.5140414679393 0.68995005 0.48082763 prediction 0.633151235973911 Functional Loss - DDX1 ENSG00000079785 UTR5 Human protein_coding chr2:15731855 chr2:15731859 . . 0 25 hm5C_associated_SNPs_52419 0 0 0 0 0 Cytosol 0.500231643921094 0.500231643921092 0.3799001 2.44249065417534e-15 hm5C_site_47771 DeepMRMD:0.3799001;iRNA_m5C:2.44249065417534e-15 47772 chr1 155023316 155023316 1 + G T UCEC 155023314 + 155023294 155023334 41 TCTTCCTCCGCCTTTAGTGACAGCAACGACGACACTGCCTA TCTTCCTCCGCCTTTAGTGACATCAACGACGACACTGCCTA < 41bp 0.81815871975696 0.501584057833614 0.5808259 0.34707564 prediction 0.633149323846691 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155023314 chr1:155023316 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_52420 0 0 0 0 0 nucleus 0.500231643921765 0.500231641333054 0.1616518 5.17742093641971e-09 hm5C_site_47772 DeepMRMD:0.1616518;iRNA_m5C:5.17742093641971e-09 47773 chr5 33937634 33937634 1 + G T UCEC 33937631 + 33937611 33937651 41 CTGGGCCGCGACAGGCAGTTCTGGCTGGGCCTCTACCACTC CTGGGCCGCGACAGGCAGTTCTGTCTGGGCCTCTACCACTC < 41bp 0.8755447156943 0.558973976069406 0.3213247 0.23533043 prediction 0.633141479249787 Functional Loss - RXFP3 ENSG00000182631 CDS Human protein_coding chr5:33937631 chr5:33937634 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52421 0 0 0 0 0 unknown 0.500231653557445 0.500231643921086 0 1.9272717866059e-08 hm5C_site_47773 DeepMRMD:0;iRNA_m5C:1.9272717866059e-08 47774 chr15 72691216 72691216 1 + G T LUSC 72691213 + 72691193 72691233 41 GACTCTGGACCTTATGCAACCATGAGCTGTGCTGGAGCCAC GACTCTGGACCTTATGCAACCATTAGCTGTGCTGGAGCCAC < 41bp 0.816567126187047 0.453475814886483 0.2808334 0.053557843 prediction 0.633134252374095 Functional Loss - TMEM202 ENSG00000187806 CDS Human protein_coding chr15:72691213 chr15:72691216 stopgain 0.994 0 24 hm5C_associated_SNPs_52422 0 0 0 0 1 unknown 0.500231643823935 0.500231638344472 0 1.09589246566344e-08 hm5C_site_47774 DeepMRMD:0;iRNA_m5C:1.09589246566344e-08 47775 chr3 158261250 158261250 1 + G T UCEC 158261247 + 158261227 158261267 41 TCCCTACTGCTATCAAGTACCAAGATGACAATTCCCTGGCC TCCCTACTGCTATCAAGTACCAATATGACAATTCCCTGGCC < 41bp 0.820071747725499 0.503509880462435 0.11445719 0.03487426 prediction 0.633123734526128 Functional Loss - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:158261247 chr3:158261250 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52423 0 0 1 0 1 Ribosome 0.500231643921093 0.500231941020927 0 0 hm5C_site_47775 DeepMRMD:0;iRNA_m5C:0 47776 chrX 107169452 107169452 1 + G T UCEC 107169450 + 107169430 107169470 41 CCCAGAGAGGTTTAGTGGCACAGGGTGCTATGGGGCAGCAG CCCAGAGAGGTTTAGTGGCACATGGTGCTATGGGGCAGCAG < 41bp 0.816560130509611 0.493100613468392 0.5420379 0.11605498 prediction 0.633120261019221 Functional Loss - MID2 ENSG00000080561 CDS Human protein_coding chrX:107169450 chrX:107169452 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52424 0 0 0 0 1 nucleus 0.500231643921092 0.500231643921092 0.0840757999999999 0 hm5C_site_47776 DeepMRMD:0.0840757999999999;iRNA_m5C:0 47777 chr1 32660790 32660790 1 + G T HNSC 32660787 + 32660767 32660807 41 CCTCAAGAGCCCACCTCCGCCAGGGCCTAGAGAGCCTGGTG CCTCAAGAGCCCACCTCCGCCAGTGCCTAGAGAGCCTGGTG < 41bp 0.870690790308236 0.554146942034459 0.8682915 0.2049469 prediction 0.633087696547554 Functional Loss - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32660787 chr1:32660790 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_52425 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921093 0.736583 0 hm5C_site_47777 DeepMRMD:0.736583;iRNA_m5C:0 47778 chr11 1861865 1861865 1 + G T THYM 1861862 + 1861842 1861882 41 CACTGCCCGCCGCTGCATATCCCGGGCTCCATGTCTGAAGT CACTGCCCGCCGCTGCATATCCCTGGCTCCATGTCTGAAGT < 41bp 0.816542513564322 0.443627476558886 0.6997969 0.071689576 prediction 0.633085027128643 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1861862 chr11:1861865 synonymous SNV . 0 24 hm5C_associated_SNPs_52426 0 0 0 0 1 exosome 0.500231643928339 0.500231652632269 0.3995938 0 hm5C_site_47778 DeepMRMD:0.3995938;iRNA_m5C:0 47779 chr2 132021602 132021602 1 + G T LUAD 132021599 + 132021579 132021619 41 ATCGTGATGGACTCTGGTGACGGGGTCACCCACACTGTGCC ATCGTGATGGACTCTGGTGACGGTGTCACCCACACTGTGCC < 41bp 0.864318128093698 0.547786680693886 0.923136 0.29455316 prediction 0.633062894799624 Functional Loss - POTEE ENSG00000188219 CDS Human protein_coding chr2:132021599 chr2:132021602 synonymous SNV . 0 24 hm5C_associated_SNPs_52427 0 0 0 0 0 chromatin 0.500231632915183 0.500231643877812 0.846272 0 hm5C_site_47779 DeepMRMD:0.846272;iRNA_m5C:0 47780 chr19 17448962 17448962 1 + G T PAAD 17448960 + 17448940 17448980 41 CCACGCCCTCCGAATTCTCACAGCACCCCGAGACCTGCCCC CCACGCCCTCCGAATTCTCACATCACCCCGAGACCTGCCCC < 41bp 0.816530989821329 0.481806676421763 0.42946076 0.10242829 prediction 0.633061979642658 Functional Loss - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17448960 chr19:17448962 nonsynonymous SNV 0.149 2 23 hm5C_associated_SNPs_52428 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643920932 0 3.20632409511745e-13 hm5C_site_47780 DeepMRMD:0;iRNA_m5C:3.20632409511745e-13 47781 chr2 242129487 242129487 1 + G T rs11695874 242129485 + 242129465 242129505 41 GGTGCAGGAGCAGGATGCTGCGGCGACGGGCCCAGGAAGAG GGTGCAGGAGCAGGATGCTGCGTCGACGGGCCCAGGAAGAG < 41bp 0.829963871649751 0.513440757966476 0.87828577 0.30065858 prediction 0.633046227366548 Functional Loss - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242129485 chr2:242129487 synonymous SNV . 0 23 hm5C_associated_SNPs_52429 0 0 0 0 2 chromatin 0.500231643921123 0.500231641854865 0.75657154 4.13251610709153e-09 hm5C_site_47781 DeepMRMD:0.75657154;iRNA_m5C:4.13251610709153e-09 47782 chr20 25656199 25656199 1 + C A UCEC 25656202 - 25656182 25656222 41 GGGGAAAGGCCATTTAATTGCAAGGATTGCGGGCGAGGCTT GGGGAAAGGCCATTTAATTGCAATGATTGCGGGCGAGGCTT < 41bp 0.816513407008173 0.436809864021304 0.36462173 0.12342608 prediction 0.633026814016347 Functional Loss - ZNF337 ENSG00000130684 CDS Human protein_coding chr20:25656202 chr20:25656199 nonsynonymous SNV 0.034 0 24 hm5C_associated_SNPs_52430 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_47782 DeepMRMD:0;iRNA_m5C:0 47783 chr19 49206750 49206750 1 + G T CESC 49206747 + 49206727 49206767 41 GACCACGTGCGGGAGGAGGCCCAGAAGTTCCTGCGGGGCCT GACCACGTGCGGGAGGAGGCCCATAAGTTCCTGCGGGGCCT < 41bp 0.816507193227008 0.440073127506761 0.73895425 0.48340374 prediction 0.633014386454017 Functional Loss - FUT2 ENSG00000176920 CDS Human protein_coding chr19:49206747 chr19:49206750 nonsynonymous SNV 0.324 4 24 hm5C_associated_SNPs_52431 0 0 0 0 0 Nucleus 0.500231644643388 0.500231643956952 0.4779085 1.37287248236362e-09 hm5C_site_47783 DeepMRMD:0.4779085;iRNA_m5C:1.37287248236362e-09 47784 chr16 67576309 67576309 1 + A C UCEC 67576305 + 67576285 67576325 41 GTCCACAGACTCTGGCCCTTCAGAACTGCCAGGCCCCACTC GTCCACAGACTCTGGCCCTTCAGACCTGCCAGGCCCCACTC < 41bp 0.816498126100191 0.43061998938043 0.5958861 0.37232375 prediction 0.632996252200383 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67576305 chr16:67576309 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_52432 0 0 1 0 0 unknown 0.500231643921089 0.500231643920733 0.1917722 7.123190925995e-13 hm5C_site_47784 DeepMRMD:0.1917722;iRNA_m5C:7.123190925995e-13 47785 chr19 12783926 12783926 1 + G T BRCA 12783923 + 12783903 12783943 41 ACAAAGACACAGGGGAGCTGCTGGGCGAGTGAGTCCTTGTG ACAAAGACACAGGGGAGCTGCTGTGCGAGTGAGTCCTTGTG < 41bp 0.81648137332221 0.443252522910894 0.72355676 0.13263404 prediction 0.63296274664442 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12783923 chr19:12783926 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_52433 0 0 0 1 1 chromatin 0.500227417292787 0.500232154620476 0.44711352 0 hm5C_site_47785 DeepMRMD:0.44711352;iRNA_m5C:0 47786 chr1 19029790 19029790 1 + G T UCEC 19029788 + 19029768 19029808 41 TCAGCAACGGCCTGTCTCCTCAGGTAGGTGGTCTCAGCCCA TCAGCAACGGCCTGTCTCCTCATGTAGGTGGTCTCAGCCCA < 41bp 0.816475262772276 0.488009961993068 0.27134186 0.074478835 prediction 0.632950525544552 Functional Loss - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19029788 chr1:19029790 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52434 0 0 0 0 1 exosome 0.500231643922129 0.50023164218522 0 3.47381745591235e-09 hm5C_site_47786 DeepMRMD:0;iRNA_m5C:3.47381745591235e-09 47787 chr3 36485037 36485037 1 + G T LUAD 36485035 + 36485015 36485055 41 AGCCTGACGTCCACACCCGCCAGGGCTGGTCTGCATCCAGG AGCCTGACGTCCACACCCGCCATGGCTGGTCTGCATCCAGG < 41bp 0.816475178141854 0.483074350078283 0.91605175 0.3370418 prediction 0.632950356283708 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36485035 chr3:36485037 nonsynonymous SNV 0.037 2 23 hm5C_associated_SNPs_52435 0 0 0 0 1 exosome 0.500231643894173 0.50023164318829 0.8321035 1.41176537127308e-09 hm5C_site_47787 DeepMRMD:0.8321035;iRNA_m5C:1.41176537127308e-09 47788 chr3 36485038 36485038 1 + G T LUSC 36485035 + 36485015 36485055 41 AGCCTGACGTCCACACCCGCCAGGGCTGGTCTGCATCCAGG AGCCTGACGTCCACACCCGCCAGTGCTGGTCTGCATCCAGG < 41bp 0.816475178141854 0.43922467951873 0.91605175 0.5308052 prediction 0.632950356283708 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36485035 chr3:36485038 nonsynonymous SNV 0.031 1 24 hm5C_associated_SNPs_52436 0 0 0 0 1 exosome 0.500231643894173 0.500281887051993 0.7704931 0 hm5C_site_47788 DeepMRMD:0.7704931;iRNA_m5C:0 47789 chr3 53217201 53217201 1 + G T LUAD 53217198 + 53217178 53217218 41 ATCGGCAGATGCACTGGCACCGCGGCCAACAGCCGGGACAC ATCGGCAGATGCACTGGCACCGCTGCCAACAGCCGGGACAC < 41bp 0.88168715498064 0.565219941202517 0.4561993 0.062434047 prediction 0.632934427556246 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53217198 chr3:53217201 synonymous SNV . 0 24 hm5C_associated_SNPs_52437 0 0 1 0 2 Cytosol 0.500231643973425 0.500231640651151 0 6.64454846699414e-09 hm5C_site_47789 DeepMRMD:0;iRNA_m5C:6.64454846699414e-09 47790 chr1 186276064 186276064 1 + G T HNSC 186276062 + 186276042 186276082 41 ACCCACCACCACCAAGGAGCCTGCACCCACCACTCCCAAGG ACCCACCACCACCAAGGAGCCTTCACCCACCACTCCCAAGG < 41bp 0.816462789973713 0.497310087448683 0.13342482 0.13290784 prediction 0.632925579947426 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276062 chr1:186276064 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_52438 0 0 0 0 0 nucleoplasm 0.500231643921406 0.500231643921092 0 6.27276008913213e-13 hm5C_site_47790 DeepMRMD:0;iRNA_m5C:6.27276008913213e-13 47791 chr3 11301218 11301218 1 + G T LUSC 11301215 + 11301195 11301235 41 TGGGTTATTCCCATTCTAGGCTGGAATCACTTCATGCAGCA TGGGTTATTCCCATTCTAGGCTGTAATCACTTCATGCAGCA < 41bp 0.81645688136679 0.462854066607667 0.36009222 0.14853281 prediction 0.63291376273358 Functional Loss - HRH1 ENSG00000196639 CDS Human protein_coding chr3:11301215 chr3:11301218 nonsynonymous SNV 0.958 4 24 hm5C_associated_SNPs_52439 0 0 0 0 0 nucleus 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_47791 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 47792 chr7 45928308 45928308 1 + G T STAD 45928306 + 45928286 45928326 41 TACTGCTCCTGCTGACTGTCCAGGTCGGCGTGACAGCCGGC TACTGCTCCTGCTGACTGTCCATGTCGGCGTGACAGCCGGC < 41bp 0.832596930898115 0.516145213689996 0.749375 0.35555443 prediction 0.632903434416238 Functional Loss - IGFBP1 ENSG00000146678 CDS Human protein_coding chr7:45928306 chr7:45928308 nonsynonymous SNV 0.050 0 23 hm5C_associated_SNPs_52440 0 0 1 0 0 nucleus 0.500231840679186 0.50056995842047 0.49875 0 hm5C_site_47792 DeepMRMD:0.49875;iRNA_m5C:0 47793 chr1 18807734 18807734 1 + A C OV 18807730 + 18807710 18807750 41 GGGCCAAGACGTCGGAGGAGCAGCAAGCGGGCTGAAGCACC GGGCCAAGACGTCGGAGGAGCAGCCAGCGGGCTGAAGCACC < 41bp 0.816440028289928 0.466059992151164 0.87807715 0.7649892 prediction 0.632880056579857 Functional Loss - KLHDC7A ENSG00000179023 CDS Human protein_coding chr1:18807730 chr1:18807734 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_52441 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921093 0.2261759 0 hm5C_site_47793 DeepMRMD:0.2261759;iRNA_m5C:0 47794 chrX 136649796 136649796 1 + G T SKCM 136649793 + 136649773 136649813 41 CTTTCAAGGCGAAGTACAAACTGGTCAACCACATCCGAGTG CTTTCAAGGCGAAGTACAAACTGTTCAACCACATCCGAGTG < 41bp 0.867801179655992 0.551366672150586 0.17045173 0.16891116 prediction 0.63286901501081 Functional Loss - ZIC3 ENSG00000156925 CDS Human protein_coding chrX:136649793 chrX:136649796 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_52442 0 0 1 0 0 exosome 0.500287499127189 0.500243433865269 0 8.81305238396024e-05 hm5C_site_47794 DeepMRMD:0;iRNA_m5C:8.81305238396024e-05 47795 chrX 10102556 10102556 1 + G T COAD 10102553 + 10102533 10102573 41 AGCGGCCCAGCCGCCGGGCCCGAGGGTCGCCTTTTGTTCGG AGCGGCCCAGCCGCCGGGCCCGATGGTCGCCTTTTGTTCGG < 41bp 0.886510194893898 0.570093433861781 0.92477 0.07239872 prediction 0.632833522064234 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10102553 chrX:10102556 nonsynonymous SNV 0.919 4 24 hm5C_associated_SNPs_52443 0 0 0 0 1 Nucleus 0.500231643921097 0.500231643921092 0.84954 9.10382880192628e-15 hm5C_site_47795 DeepMRMD:0.84954;iRNA_m5C:9.10382880192628e-15 47796 chr12 52448886 52448886 1 + G T LUSC 52448883 + 52448863 52448903 41 ACCTCAACCAAGGCCCGGAGCGGGGCCCCAGGTGGAAGTGA ACCTCAACCAAGGCCCGGAGCGGTGCCCCAGGTGGAAGTGA < 41bp 0.816415396329222 0.433022761715807 0.92472386 0.25091296 prediction 0.632830792658444 Functional Loss - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52448883 chr12:52448886 synonymous SNV . 0 24 hm5C_associated_SNPs_52444 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921094 0.84944772 0 hm5C_site_47796 DeepMRMD:0.84944772;iRNA_m5C:0 47797 chr5 176824891 176824891 1 + G T ACC 176824888 + 176824868 176824908 41 GCCAAGGCGCTGGGGAAACGCACGGCCAAGTACCGCTGGTT GCCAAGGCGCTGGGGAAACGCACTGCCAAGTACCGCTGGTT < 41bp 0.874130279022509 0.557723467034444 0.76610404 0.25769648 prediction 0.632813623976132 Functional Loss - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176824888 chr5:176824891 synonymous SNV . 0 24 hm5C_associated_SNPs_52445 0 0 0 0 0 exosome 0.500231644238798 0.500231643921092 0.53220808 6.35410835059247e-10 hm5C_site_47797 DeepMRMD:0.53220808;iRNA_m5C:6.35410835059247e-10 47798 chrX 69669672 69669672 1 + G T UCEC 69669669 + 69669649 69669689 41 CGGAGGCGACAGCCTCCACCCGAGACCATCATGGAGGTCAA CGGAGGCGACAGCCTCCACCCGATACCATCATGGAGGTCAA < 41bp 0.870684088737051 0.554284069671193 0.445593 0.06822112 prediction 0.632800038131716 Functional Loss - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69669669 chrX:69669672 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_52446 0 0 0 0 1 Ribosome 0.500231624955167 0.500231643921088 0 0 hm5C_site_47798 DeepMRMD:0;iRNA_m5C:0 47799 chr10 5495517 5495517 1 + G T THYM 5495514 + 5495494 5495534 41 GAGCAGATTGGTCACATTCTCGTGAGCTGGGTATGTAGTGA GAGCAGATTGGTCACATTCTCGTTAGCTGGGTATGTAGTGA < 41bp 0.81639068626636 0.457619866662659 0.8462665 0.095936924 prediction 0.63278137253272 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5495514 chr10:5495517 synonymous SNV . 0 24 hm5C_associated_SNPs_52447 0 0 1 0 2 Cytosol 0.500231639862347 0.500231445441165 0.692533 3.88842363863162e-07 hm5C_site_47799 DeepMRMD:0.692533;iRNA_m5C:3.88842363863162e-07 47800 chr7 6631442 6631442 1 + A T LUAD 6631438 + 6631418 6631458 41 AGCTTGTTGGGAAAACTGGTCTCCATGGCGGTGGCTGTGTG AGCTTGTTGGGAAAACTGGTCTCCTTGGCGGTGGCTGTGTG < 41bp 0.827919825043707 0.511547950440478 0.947509 0.37723547 prediction 0.632743749206459 Functional Loss - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631438 chr7:6631442 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_52448 0 0 1 0 1 chromatin 0.500231648965792 0.500231643920609 0.895018 1.00903649880024e-08 hm5C_site_47800 DeepMRMD:0.895018;iRNA_m5C:1.00903649880024e-08 47801 chr2 100013284 100013284 1 + G T THCA 100013281 + 100013261 100013301 41 CTCAGTACATTTTTAATTCTCGAGATCCGATAGTGATGGGG CTCAGTACATTTTTAATTCTCGATATCCGATAGTGATGGGG < 41bp 0.854461314816311 0.538096740207343 0.8666283 0.35341692 prediction 0.632729149217938 Functional Loss - EIF5B ENSG00000158417 CDS Human protein_coding chr2:100013281 chr2:100013284 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52449 0 0 1 0 2 Ribosome 0.500231643921093 0.500231644585352 0.7332566 0 hm5C_site_47801 DeepMRMD:0.7332566;iRNA_m5C:0 47802 chr7 141424951 141424951 1 + G T COAD 141424949 + 141424929 141424969 41 ATATCCGCAAGGGTAACTTTCCGGACGTTCCTCAGGAGCTC ATATCCGCAAGGGTAACTTTCCTGACGTTCCTCAGGAGCTC < 41bp 0.822479725142875 0.50611937390442 0.7983004 0.3262226 prediction 0.632720702476909 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141424949 chr7:141424951 synonymous SNV . 0 23 hm5C_associated_SNPs_52450 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.5966008 0 hm5C_site_47802 DeepMRMD:0.5966008;iRNA_m5C:0 47803 chr20 55212940 55212940 1 + G T BLCA 55212937 + 55212917 55212957 41 GGCAGCCAGGCCATCTGTGCCGCGGTGTCTGCCCTGCAGAA GGCAGCCAGGCCATCTGTGCCGCTGTGTCTGCCCTGCAGAA < 41bp 0.816360316711076 0.471068031028875 0.8197427 0.07757911 prediction 0.632720633422152 Functional Loss - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55212937 chr20:55212940 synonymous SNV . 0 24 hm5C_associated_SNPs_52451 0 0 0 0 0 Cytosol 0.50023157416579 0.500231644104589 0.6394854 0 hm5C_site_47803 DeepMRMD:0.6394854;iRNA_m5C:0 47804 chr20 21327089 21327089 1 + G T UCEC 21327086 + 21327066 21327106 41 GGCTGGAAGCAGCGGTACTACAAGAACAAATTTGATGTGGA GGCTGGAAGCAGCGGTACTACAATAACAAATTTGATGTGGA < 41bp 0.81635974947991 0.457708821135095 0.5210295 0.19930515 prediction 0.63271949895982 Functional Loss - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21327086 chr20:21327089 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52452 0 0 1 0 2 Cytosol 0.500231643918544 0.500231643921093 0.0420590000000001 0 hm5C_site_47804 DeepMRMD:0.0420590000000001;iRNA_m5C:0 47805 chr4 134072236 134072236 1 + G T LUAD 134072234 + 134072214 134072254 41 ACTGGCAGACTGGAGGTAAGCGGCGAGTTGGACTATGAAGA ACTGGCAGACTGGAGGTAAGCGTCGAGTTGGACTATGAAGA < 41bp 0.816347555438367 0.489330624931583 0.473898 0.06993699 prediction 0.632695110876733 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134072234 chr4:134072236 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52453 0 0 0 0 0 cytosol 0.500231643921092 0.500231643909706 0 2.27733387703211e-11 hm5C_site_47805 DeepMRMD:0;iRNA_m5C:2.27733387703211e-11 47806 chr20 61460839 61460839 1 + G T STAD 61460836 + 61460816 61460856 41 GGACGAGCGGGGTCCAAAGGCGAGAAGGGAGAACGGGTATG GGACGAGCGGGGTCCAAAGGCGATAAGGGAGAACGGGTATG < 41bp 0.872612055877084 0.556273975218729 0.73283195 0.49554488 prediction 0.632676161316709 Functional Loss - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61460836 chr20:61460839 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52454 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.4656639 0 hm5C_site_47806 DeepMRMD:0.4656639;iRNA_m5C:0 47807 chr9 133957545 133957545 1 + G T HNSC 133957542 + 133957522 133957562 41 CCAGGACTCTGCTGGCTGATCTGGAAGGTACGTGAGTCCAG CCAGGACTCTGCTGGCTGATCTGTAAGGTACGTGAGTCCAG < 41bp 0.869537040198481 0.553200669205331 0.36907712 0.25845894 prediction 0.6326727419863 Functional Loss - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133957542 chr9:133957545 stopgain 0.971 0 24 hm5C_associated_SNPs_52455 0 0 0 0 2 chromatin 0.500231643865341 0.5002316790734 0 0 hm5C_site_47807 DeepMRMD:0;iRNA_m5C:0 47808 chr16 89652141 89652141 1 + G T SARC 89652139 + 89652119 89652159 41 CGAGGAAAGCACGACTTCATCGGAGAATTCTCTACCACCTT CGAGGAAAGCACGACTTCATCGTAGAATTCTCTACCACCTT < 41bp 0.816333548186517 0.493204258848937 0.91267234 0.509711 prediction 0.632667096373035 Functional Loss - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89652139 chr16:89652141 nonsynonymous SNV 0.340 4 23 hm5C_associated_SNPs_52456 0 0 1 0 2 Nucleus 0.500231643921093 0.500231644939648 0.80592268 0 hm5C_site_47808 DeepMRMD:0.80592268;iRNA_m5C:0 47809 chr21 46020828 46020828 1 + G T LUSC 46020825 + 46020805 46020845 41 GCCAGCAGTCTAGCTGCCAGCTGGCTTGCTGTGCCTCCTCC GCCAGCAGTCTAGCTGCCAGCTGTCTTGCTGTGCCTCCTCC < 41bp 0.866050598430873 0.549726207699322 0.63873893 0.27710354 prediction 0.632648781463101 Functional Loss - KRTAP10-7 ENSG00000205441 CDS Human other chr21:46020825 chr21:46020828 nonsynonymous SNV 0.824 0 24 hm5C_associated_SNPs_52457 0 0 0 0 0 unknown 0.50023165185842 0.500231643967894 0.27747786 1.57810526868474e-08 hm5C_site_47809 DeepMRMD:0.27747786;iRNA_m5C:1.57810526868474e-08 47810 chr19 41518390 41518390 1 + G T UCEC 41518387 + 41518367 41518407 41 TTCCGAGGGTACATCATCCCCAAGGTAAGACCGGCTGGAAC TTCCGAGGGTACATCATCCCCAATGTAAGACCGGCTGGAAC < 41bp 0.816321169211515 0.440856567979346 0.8293166 0.07676321 prediction 0.63264233842303 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41518387 chr19:41518390 nonsynonymous SNV 0.755 3 24 hm5C_associated_SNPs_52458 0 0 0 0 1 Nucleus 0.500231643921231 0.500231643921092 0.6586332 2.77999845366139e-13 hm5C_site_47810 DeepMRMD:0.6586332;iRNA_m5C:2.77999845366139e-13 47811 chr10 64565515 64565515 1 + G T UCEC 64565512 + 64565492 64565532 41 GTGCTGGAGCCGGTCAGGCCCAAGGAGGCCTCCAGCTCGGC GTGCTGGAGCCGGTCAGGCCCAATGAGGCCTCCAGCTCGGC < 41bp 0.869096691241157 0.552776445776022 0.8978509 0.27038836 prediction 0.632640490930269 Functional Loss - ADO ENSG00000181915 CDS Human protein_coding chr10:64565512 chr10:64565515 nonsynonymous SNV 0.768 0 24 hm5C_associated_SNPs_52459 0 0 1 0 0 exosome 0.500231643918691 0.500231631884113 0.7957018 2.40691555575268e-08 hm5C_site_47811 DeepMRMD:0.7957018;iRNA_m5C:2.40691555575268e-08 47812 chr10 3175452 3175452 1 + A C UCEC 3175448 + 3175428 3175468 41 CTTCATTTACCAGCTGTATTCAGAAGAGGGCAAAGGCGTGT CTTCATTTACCAGCTGTATTCAGACGAGGGCAAAGGCGTGT < 41bp 0.816310201657248 0.429879196087855 0.8628688 0.8856108 prediction 0.632620403314496 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3175448 chr10:3175452 nonsynonymous SNV 0.540 3 25 hm5C_associated_SNPs_52460 0 0 1 0 2 Nucleus 0.50023164319254 0.500228643627518 0 5.99913004561969e-06 hm5C_site_47812 DeepMRMD:0;iRNA_m5C:5.99913004561969e-06 47813 chr1 249211640 249211640 1 + G T LIHC 249211638 + 249211618 249211658 41 CGGGGGTCCAAGCAGCTGCACAGGGGGAAGCCTGTGCGACT CGGGGGTCCAAGCAGCTGCACATGGGGAAGCCTGTGCGACT < 41bp 0.834480929759986 0.518181373082183 0.92836857 0.8956773 prediction 0.632599113355605 Functional Loss - PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249211638 chr1:249211640 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_52461 0 0 1 0 0 Cytosol 0.500231645992915 0.500231643921092 0.0653825399999999 4.14364564882419e-09 hm5C_site_47813 DeepMRMD:0.0653825399999999;iRNA_m5C:4.14364564882419e-09 47814 chrX 68836251 68836251 1 + G T LUSC 68836248 + 68836228 68836268 41 GGGTGTGGCGGGGCCCCTGCCCGGGCGGGCGAAGGGAACAG GGGTGTGGCGGGGCCCCTGCCCGTGCGGGCGAAGGGAACAG < 41bp 0.816295872436492 0.475735122236971 0.7424509 0.25470492 prediction 0.632591744872984 Functional Loss - EDA ENSG00000158813 CDS Human protein_coding chrX:68836248 chrX:68836251 synonymous SNV . 0 24 hm5C_associated_SNPs_52462 0 0 1 0 0 cytosol 0.500227657710766 0.500228109940153 0.4849018 0 hm5C_site_47814 DeepMRMD:0.4849018;iRNA_m5C:0 47815 chr12 122380855 122380855 1 + G T LUAD 122380852 + 122380832 122380872 41 TGGAAACGCCAGCATGCACTCTCGAACTCCCCACAGAGTAC TGGAAACGCCAGCATGCACTCTCTAACTCCCCACAGAGTAC < 41bp 0.872027474730225 0.555742087802988 0.4008279 0.81748927 prediction 0.632570773854475 Functional Loss - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122380852 chr12:122380855 stopgain 0.002 0 24 hm5C_associated_SNPs_52463 0 0 1 0 2 chromatin 0.500231644091722 0.500231643905408 0 3.7262859464704e-10 hm5C_site_47815 DeepMRMD:0;iRNA_m5C:3.7262859464704e-10 47816 chr2 23918876 23918876 1 + G T SARC 23918874 + 23918854 23918894 41 GTCAGATGGTGGGGATGACCCAGCGCTCGCTGGTGGCCGTC GTCAGATGGTGGGGATGACCCATCGCTCGCTGGTGGCCGTC < 41bp 0.816281857447601 0.498779458762876 0.88647854 0.4273996 prediction 0.632563714895201 Functional Loss - KLHL29 ENSG00000119771 CDS Human protein_coding chr2:23918874 chr2:23918876 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_52464 0 0 0 0 1 insoluble cytoplasm 0.500231658856004 0.500231649614484 0.77295708 1.84830395433266e-08 hm5C_site_47816 DeepMRMD:0.77295708;iRNA_m5C:1.84830395433266e-08 47817 chr9 130420727 130420727 1 + G T COAD 130420724 + 130420704 130420744 41 GTGTATCTCATCACTCCATCCGAGAAGGTAAACCTTCCACC GTGTATCTCATCACTCCATCCGATAAGGTAAACCTTCCACC < 41bp 0.816280468623976 0.450095098592451 0.87555003 0.23603234 prediction 0.632560937247952 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130420724 chr9:130420727 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_52465 0 0 1 0 2 Cytosol 0.500231646090179 0.500232258540469 0.75110006 0 hm5C_site_47817 DeepMRMD:0.75110006;iRNA_m5C:0 47818 chr13 96212655 96212655 1 + A C rs79906565 96212651 + 96212631 96212671 41 GTTAGGGCTGTGCTCAATGACTGGATGTTCCCTATATGCAA GTTAGGGCTGTGCTCAATGACTGGCTGTTCCCTATATGCAA < 41bp 0.889766659154164 0.573526310773623 0.028070897 0.023866206 prediction 0.63248069676108 Functional Loss - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96212651 chr13:96212655 synonymous SNV . 0 25 hm5C_associated_SNPs_52466 0 0 0 0 2 Endoplasmic reticulum 0.500231643631091 0.500231023591898 0 1.24007838619988e-06 hm5C_site_47818 DeepMRMD:0;iRNA_m5C:1.24007838619988e-06 47819 chr7 128449539 128449539 1 + G T UCEC 128449537 + 128449517 128449557 41 TGTCCAGACTGACAGAATTGCAGGAAAAGTACAAGGCCAGC TGTCCAGACTGACAGAATTGCATGAAAAGTACAAGGCCAGC < 41bp 0.827416225607386 0.511211344054642 0.8783723 0.22397444 prediction 0.63240976310549 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128449537 chr7:128449539 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_52467 0 0 0 0 0 chromatin 0.500234193097142 0.500235404378911 0.7567446 0 hm5C_site_47819 DeepMRMD:0.7567446;iRNA_m5C:0 47820 chr1 17603297 17603297 1 + G T LUAD 17603294 + 17603274 17603314 41 CCGGATGCTCCTGGCCAGCCCTGGGGCCTGCTTCAAGCTCT CCGGATGCTCCTGGCCAGCCCTGTGGCCTGCTTCAAGCTCT < 41bp 0.883636914615451 0.567440148016399 0.8540487 0.24944752 prediction 0.632393533198104 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17603294 chr1:17603297 nonsynonymous SNV 0.015 0 24 hm5C_associated_SNPs_52468 0 0 0 0 2 unknown 0.500231643921092 0.500231643921094 0.7080974 0 hm5C_site_47820 DeepMRMD:0.7080974;iRNA_m5C:0 47821 chr11 28318381 28318381 1 + G T rs375725564 28318378 + 28318358 28318398 41 GCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAA GCATCTATCCTAAGAACATACGGTGAGGAGAAGCATGCCAA < 41bp 0.816196067439996 0.468680680695651 0.7170624 0.104873896 prediction 0.632392134879993 Functional Loss - METTL15 ENSG00000169519 CDS Human protein_coding chr11:28318378 chr11:28318381 stopgain 0.969 1 24 hm5C_associated_SNPs_52469 0 0 0 0 3 Nucleus 0.500231643921093 0.500231643921267 0.4341248 0 hm5C_site_47821 DeepMRMD:0.4341248;iRNA_m5C:0 47822 chr19 23329189 23329189 1 + G T LUAD 23329186 + 23329166 23329206 41 TACACATAAAAGAATTCATACTGGAGAGAAACCCTATGAAT TACACATAAAAGAATTCATACTGTAGAGAAACCCTATGAAT < 41bp 0.846786301005587 0.530595528663483 0.2118099 0.04453343 prediction 0.632381544684209 Functional Loss - ZNF730 ENSG00000183850 CDS Human protein_coding chr19:23329186 chr19:23329189 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_52470 0 0 0 4 0 chromatin 0.500231707707765 0.500231643958816 0 1.27497897572937e-07 hm5C_site_47822 DeepMRMD:0;iRNA_m5C:1.27497897572937e-07 47823 chr1 32087094 32087094 1 + G T UCEC 32087091 + 32087071 32087111 41 CCTGCAGATGACCTCTATCCCAAGATCTACCACAGTTGCTT CCTGCAGATGACCTCTATCCCAATATCTACCACAGTTGCTT < 41bp 0.816162611897209 0.44776992645046 0.7058035 0.24794671 prediction 0.632325223794417 Functional Loss - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32087091 chr1:32087094 nonsynonymous SNV 0.973 2 24 hm5C_associated_SNPs_52471 0 0 0 0 2 Endoplasmic reticulum 0.500231643921091 0.500231643921092 0.411607 0 hm5C_site_47823 DeepMRMD:0.411607;iRNA_m5C:0 47824 chr1 152732802 152732802 1 + G T UCEC 152732800 + 152732780 152732820 41 CCTATGGGAGCTTCACTGAACAGCACCGCTCTCGGAGCACC CCTATGGGAGCTTCACTGAACATCACCGCTCTCGGAGCACC < 41bp 0.830610182629033 0.514478287134993 0.22945479 0.078198254 prediction 0.632263790988079 Functional Loss - KPRP ENSG00000203786 CDS Human protein_coding chr1:152732800 chr1:152732802 nonsynonymous SNV 0.049 1 23 hm5C_associated_SNPs_52472 0 0 0 0 0 exosome 0.500231643921331 0.500231643940534 0 0 hm5C_site_47824 DeepMRMD:0;iRNA_m5C:0 47825 chr12 119591400 119591400 1 + G T UCEC 119591398 + 119591378 119591418 41 TCTGGCAAGAGGAGCCCGCCCAGCAGAAGCTCTAGGTCCCG TCTGGCAAGAGGAGCCCGCCCATCAGAAGCTCTAGGTCCCG < 41bp 0.829063034683498 0.512937871792726 0.53119385 0.20452103 prediction 0.632250325781544 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119591398 chr12:119591400 nonsynonymous SNV 0.949 3 23 hm5C_associated_SNPs_52473 0 0 1 0 2 Endoplasmic reticulum 0.500231643921029 0.500231643921091 0.0623876999999999 0 hm5C_site_47825 DeepMRMD:0.0623876999999999;iRNA_m5C:0 47826 chr1 158261014 158261014 1 + A C ESCA 158261010 + 158260990 158261030 41 GAGGTCAGGGCTCAGGATGGCTGGACGAGTTGCAGACTCAT GAGGTCAGGGCTCAGGATGGCTGGCCGAGTTGCAGACTCAT < 41bp 0.882375859101949 0.566258174912678 0.4962625 0.3959235 prediction 0.632235368378541 Functional Loss - CD1C ENSG00000158481 CDS Human protein_coding chr1:158261010 chr1:158261014 nonsynonymous SNV 0.068 1 25 hm5C_associated_SNPs_52474 0 0 0 0 1 exosome 0.500257625721189 0.500231644146829 0 5.19631487194694e-05 hm5C_site_47826 DeepMRMD:0;iRNA_m5C:5.19631487194694e-05 47827 chr5 140731312 140731312 1 + G T SKCM 140731310 + 140731290 140731330 41 TGGCCAGTGACCTGGAGCCGCGGGAGCTGTTGTCCTACGTG TGGCCAGTGACCTGGAGCCGCGTGAGCTGTTGTCCTACGTG < 41bp 0.816117205880784 0.488009202229566 0.93615746 0.9032297 prediction 0.632234411761568 Functional Loss - PCDHGB1 ENSG00000254221 CDS Human protein_coding chr5:140731310 chr5:140731312 synonymous SNV . 0 23 hm5C_associated_SNPs_52475 0 0 1 0 0 exosome 0.500231646169986 0.500234762563636 0.0658555199999999 0 hm5C_site_47827 DeepMRMD:0.0658555199999999;iRNA_m5C:0 47828 chr18 3277806 3277806 1 + G T LUAD 3277803 + 3277783 3277823 41 CTAAGAGAGCTGCTGACAACCATGGGGGATCGGTTTACAGA CTAAGAGAGCTGCTGACAACCATTGGGGATCGGTTTACAGA < 41bp 0.816108732067703 0.45801606929723 0.63161206 0.038669795 prediction 0.632217464135405 Functional Loss - MYL12B ENSG00000118680 CDS Human protein_coding chr18:3277803 chr18:3277806 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_52476 0 0 1 0 1 Cytosol 0.500231644274175 0.500231660421735 0.26322412 0 hm5C_site_47828 DeepMRMD:0.26322412;iRNA_m5C:0 47829 chr12 119773029 119773029 1 + G T LUSC 119773026 + 119773006 119773046 41 AAGCTTCAGAGTTCCCCCAACTCGGGGGCTGTCCGGCCCTT AAGCTTCAGAGTTCCCCCAACTCTGGGGCTGTCCGGCCCTT < 41bp 0.816108506955822 0.458691223553122 0.3954805 0.14054585 prediction 0.632217013911645 Functional Loss - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119773026 chr12:119773029 synonymous SNV . 0 24 hm5C_associated_SNPs_52477 0 0 0 0 1 exosome 0.500231643920825 0.500231643925926 0 0 hm5C_site_47829 DeepMRMD:0;iRNA_m5C:0 47830 chr17 4351498 4351498 1 + G T TGCT 4351495 + 4351475 4351515 41 CCTTGATCCTGCTTATCCTGCTGGTTCCAGACCCACCCCGG CCTTGATCCTGCTTATCCTGCTGTTTCCAGACCCACCCCGG < 41bp 0.81609695508369 0.437362250719139 0.55631673 0.15354875 prediction 0.632193910167379 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4351495 chr17:4351498 nonsynonymous SNV 0.965 4 24 hm5C_associated_SNPs_52478 0 0 0 0 1 exosome 0.500232033538638 0.500231643926103 0.11263346 7.79225070024481e-07 hm5C_site_47830 DeepMRMD:0.11263346;iRNA_m5C:7.79225070024481e-07 47831 chr19 32968497 32968497 1 + G T SARC 32968494 + 32968474 32968514 41 CTGGCCGGAGTCAAGCTGTGCACGGGAAGGACCCTAACCAA CTGGCCGGAGTCAAGCTGTGCACTGGAAGGACCCTAACCAA < 41bp 0.81609558920365 0.461147284704504 0.6047404 0.2914909 prediction 0.6321911784073 Functional Loss - DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32968494 chr19:32968497 synonymous SNV . 0 24 hm5C_associated_SNPs_52479 0 0 1 0 2 cytosol 0.500231643921093 0.500231657173595 0.2094808 0 hm5C_site_47831 DeepMRMD:0.2094808;iRNA_m5C:0 47832 chr5 140810976 140810976 1 + G T LAML 140810974 + 140810954 140810994 41 CTGGTCCTTACGGCCTCCGACGGGGGCGACCCGGTGCGCAC CTGGTCCTTACGGCCTCCGACGTGGGCGACCCGGTGCGCAC < 41bp 0.841902760805869 0.525808498310368 0.9413308 0.8664981 prediction 0.632188524991002 Functional Loss - PCDHGA12 ENSG00000253159 CDS Human protein_coding chr5:140810974 chr5:140810976 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_52480 0 0 0 0 0 exosome 0.500231643799271 0.50022979719365 0.1496654 3.69321124193966e-06 hm5C_site_47832 DeepMRMD:0.1496654;iRNA_m5C:3.69321124193966e-06 47833 chr20 37356616 37356616 1 + G T UCEC 37356613 + 37356593 37356633 41 GTCAAGTTCTACATCGACGTCAAGAAGTTCCCCATCTCCAT GTCAAGTTCTACATCGACGTCAATAAGTTCCCCATCTCCAT < 41bp 0.816093460067138 0.456319840439576 0.49999976 0.23810655 prediction 0.632186920134276 Functional Loss - SLC32A1 ENSG00000101438 CDS Human protein_coding chr20:37356613 chr20:37356616 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_52481 0 0 0 0 0 exosome 0.500231643935923 0.500231643924619 0 2.26065832720224e-11 hm5C_site_47833 DeepMRMD:0;iRNA_m5C:2.26065832720224e-11 47834 chr19 54403522 54403522 1 + G T LUAD 54403519 + 54403499 54403539 41 TTCGTGATGGAGTACGTCACCGGGGGAGACTTGATGTACCA TTCGTGATGGAGTACGTCACCGGTGGAGACTTGATGTACCA < 41bp 0.882057068680793 0.565984664444842 0.9088104 0.0898864 prediction 0.632144808471903 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403519 chr19:54403522 synonymous SNV . 0 24 hm5C_associated_SNPs_52482 0 0 0 0 1 Cytosol 0.50023164390409 0.500231643696013 0.8176208 4.16152889926025e-10 hm5C_site_47834 DeepMRMD:0.8176208;iRNA_m5C:4.16152889926025e-10 47835 chr5 43277227 43277227 1 + G T READ 43277224 + 43277204 43277244 41 AAACCCAGAGGCTACTATCCCGAGAAATCTCCAGCATGGAA AAACCCAGAGGCTACTATCCCGATAAATCTCCAGCATGGAA < 41bp 0.816072037633678 0.450714973326212 0.533177 0.07194781 prediction 0.632144075267356 Functional Loss - NIM1K ENSG00000177453 CDS Human protein_coding chr5:43277224 chr5:43277227 stopgain 0.922 1 24 hm5C_associated_SNPs_52483 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.066354 0 hm5C_site_47835 DeepMRMD:0.066354;iRNA_m5C:0 47836 chr7 143175632 143175632 1 + G T LUSC 143175629 + 143175609 143175649 41 AGCACAACGGGCACAGCCTGCAGGACCCCAGCACCCAGGCT AGCACAACGGGCACAGCCTGCAGTACCCCAGCACCCAGGCT < 41bp 0.816062345128733 0.448182506714518 0.8985753 0.5177607 prediction 0.632124690257466 Functional Loss - TAS2R41 ENSG00000221855 CDS Human protein_coding chr7:143175629 chr7:143175632 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_52484 0 0 0 0 0 exosome 0.500231643914364 0.500231643921092 0.7616292 0 hm5C_site_47836 DeepMRMD:0.7616292;iRNA_m5C:0 47837 chr1 109265024 109265024 1 + G T LUAD 109265021 + 109265001 109265041 41 GCTCTGAAGGCATCTTTTTCCTGGGCACGGGCAGAAGGAGC GCTCTGAAGGCATCTTTTTCCTGTGCACGGGCAGAAGGAGC < 41bp 0.870290830908794 0.554245175214308 0.20994106 0.06270552 prediction 0.632091311388973 Functional Loss - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109265021 chr1:109265024 nonsynonymous SNV 0.170 3 24 hm5C_associated_SNPs_52485 0 0 0 0 0 exosome 0.500231643931042 0.500231643921201 0 1.96820337805548e-11 hm5C_site_47837 DeepMRMD:0;iRNA_m5C:1.96820337805548e-11 47838 chrX 105169003 105169003 1 + G T LUSC 105169000 + 105168980 105169020 41 GATTGAAGAGACCTGCGTCTCAGGACTTTGAATATCTACAG GATTGAAGAGACCTGCGTCTCAGTACTTTGAATATCTACAG < 41bp 0.847400098997375 0.531359833594491 0.85958946 0.24805093 prediction 0.632080530805768 Functional Loss - NRK ENSG00000123572 CDS Human protein_coding chrX:105169000 chrX:105169003 nonsynonymous SNV 0.577 2 24 hm5C_associated_SNPs_52486 0 0 0 0 1 exosome 0.500241620021167 0.500231500062244 0.71917892 2.02399178461654e-05 hm5C_site_47838 DeepMRMD:0.71917892;iRNA_m5C:2.02399178461654e-05 47839 chr2 85866372 85866372 1 + A C LUAD 85866368 + 85866348 85866388 41 TGCTCCATAATGACGAGTACCAGGAGACAATGGTGGAGTCC TGCTCCATAATGACGAGTACCAGGCGACAATGGTGGAGTCC < 41bp 0.884827969933509 0.568792387479641 0.9255396 0.9221022 prediction 0.632071164907734 Functional Loss - USP39 ENSG00000168883 CDS Human protein_coding chr2:85866368 chr2:85866372 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_52487 0 0 1 0 1 Cytosol 0.500193465044265 0.500239862558515 0.00687480000000007 0 hm5C_site_47839 DeepMRMD:0.00687480000000007;iRNA_m5C:0 47840 chr9 36171159 36171159 1 + G T UCEC 36171156 + 36171136 36171176 41 TCAATCCAAATGCCTTCTTGCTGGACCAAAAGACAGGCAAG TCAATCCAAATGCCTTCTTGCTGTACCAAAAGACAGGCAAG < 41bp 0.816034159051958 0.471178306614345 0.49791893 0.28197587 prediction 0.632068318103916 Functional Loss - CCIN ENSG00000185972 CDS Human protein_coding chr9:36171156 chr9:36171159 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52488 0 0 0 0 0 exosome 0.500231643921093 0.50023164392107 0 4.57411886145564e-14 hm5C_site_47840 DeepMRMD:0;iRNA_m5C:4.57411886145564e-14 47841 chr19 3179030 3179030 1 + G T COAD 3179027 + 3179007 3179047 41 AGCCACATGCGGTCGCGACGCTGGGTCTACTATTGCCTGGT AGCCACATGCGGTCGCGACGCTGTGTCTACTATTGCCTGGT < 41bp 0.8702177261306 0.554189503194815 0.75458825 0.11431855 prediction 0.632056445871571 Functional Loss - S1PR4 ENSG00000125910 CDS Human protein_coding chr19:3179027 chr19:3179030 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_52489 0 0 0 0 0 exosome 0.500231643921145 0.500231615489164 0.5091765 5.68639628717449e-08 hm5C_site_47841 DeepMRMD:0.5091765;iRNA_m5C:5.68639628717449e-08 47842 chr9 71152393 71152393 1 + G T LUSC 71152390 + 71152370 71152410 41 CTCAAGGCTCTCTTCATAAGCTGGAGGGTAAAAGTCTGGCC CTCAAGGCTCTCTTCATAAGCTGTAGGGTAAAAGTCTGGCC < 41bp 0.859824664803454 0.543805726269769 0.24565369 0.072892785 prediction 0.632037877067371 Functional Loss - TMEM252 ENSG00000181778 CDS Human protein_coding chr9:71152390 chr9:71152393 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_52490 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0 1.11022302462516e-15 hm5C_site_47842 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 47843 chr15 25321010 25321010 1 + G T BLCA 25321007 + 25320987 25321027 41 CTTCAGGCTGGTGGATACCTCAGGATGGTAAGTATTGGTTT CTTCAGGCTGGTGGATACCTCAGTATGGTAAGTATTGGTTT < 41bp 0.816008215239726 0.481556939994036 0.7207537 0.23386136 prediction 0.632016430479452 Functional Loss - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25321007 chr15:25321010 . . 0 24 hm5C_associated_SNPs_52491 0 0 1 0 1 unknown 0.5002316439209 0.500231667502794 0.4415074 0 hm5C_site_47843 DeepMRMD:0.4415074;iRNA_m5C:0 47844 chr11 8115651 8115651 1 + A C LUSC 8115647 + 8115627 8115667 41 GGGAGCCACGCGCCCAACAGCACCAGCTTCAGCCAAGAGAA GGGAGCCACGCGCCCAACAGCACCCGCTTCAGCCAAGAGAA < 41bp 0.815990508153295 0.4063315151764 0.26848015 0.16715842 prediction 0.63198101630659 Functional Loss - TUB ENSG00000166402 CDS Human protein_coding chr11:8115647 chr11:8115651 synonymous SNV . 0 25 hm5C_associated_SNPs_52492 0 0 0 0 2 nucleus 0.500231643921099 0.500231643922216 0 0 hm5C_site_47844 DeepMRMD:0;iRNA_m5C:0 47845 chr3 62304802 62304802 1 + G T rs2293555 62304799 + 62304779 62304819 41 CGCAGGGCCTTGCAGGACCGCTGGGGAGGATGTTGTTAACG CGCAGGGCCTTGCAGGACCGCTGTGGAGGATGTTGTTAACG < 41bp 0.815977905063777 0.46769784945387 0.45027682 0.3250361 prediction 0.631955810127554 Functional Loss - C3orf14 ENSG00000241472 ncRNA_intronic Human processed_transcript chr3:62304799 chr3:62304802 . . 0 24 hm5C_associated_SNPs_52493 0 0 1 0 0 exosome 0.500231646372084 0.500231643920253 0 4.90366192096303e-09 hm5C_site_47845 DeepMRMD:0;iRNA_m5C:4.90366192096303e-09 47846 chr16 688557 688557 1 + A C rs34409359 688553 + 688533 688573 41 CACTGGCCTTCCTTGAAGGACACGATGCCCGATGCTGGTGG CACTGGCCTTCCTTGAAGGACACGCTGCCCGATGCTGGTGG < 41bp 0.815967400732898 0.471307316904413 0.042392015 0.025134027 prediction 0.631934801465796 Functional Loss - METTL26;MCRIP2 ENSG00000130731;ENSG00000197727 intergenic Human other chr16:688553 chr16:688557 . . 0 25 hm5C_associated_SNPs_52494 0 0 0 0 0 unknown 0.500231648967007 0.500231643953125 0 1.00277648407143e-08 hm5C_site_47846 DeepMRMD:0;iRNA_m5C:1.00277648407143e-08 47847 chr15 44620907 44620907 1 + A C UCEC 44620903 + 44620883 44620923 41 AGCAACTTGCTGAGCTTCGTCAGGAATTTCTTCGACAAGAA AGCAACTTGCTGAGCTTCGTCAGGCATTTCTTCGACAAGAA < 41bp 0.886613092105809 0.570665058618175 0.67336464 0.66181076 prediction 0.631896066975269 Functional Loss - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44620903 chr15:44620907 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_52495 0 0 1 0 2 Ribosome 0.500231546261866 0.500230002134375 0.0231077599999998 3.08825498196441e-06 hm5C_site_47847 DeepMRMD:0.0231077599999998;iRNA_m5C:3.08825498196441e-06 47848 chr11 2937874 2937874 1 + G T KIRP 2937871 + 2937851 2937891 41 GGATTCAGTGCCCGGCCATCCTGGCTGCCCTGGCCACCCTC GGATTCAGTGCCCGGCCATCCTGTCTGCCCTGGCCACCCTC < 41bp 0.815947834609861 0.437989484168257 0.8271159 0.2795952 prediction 0.631895669219721 Functional Loss - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2937871 chr11:2937874 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_52496 0 0 1 0 2 Ribosome 0.500229617389194 0.500231950428744 0.6542318 0 hm5C_site_47848 DeepMRMD:0.6542318;iRNA_m5C:0 47849 chr2 162280049 162280049 1 + G T LUSC 162280047 + 162280027 162280067 41 CCCGGGCGCGGGCGCGGGCCCCGGGCCGGGTACGGACCGCA CCCGGGCGCGGGCGCGGGCCCCTGGCCGGGTACGGACCGCA < 41bp 0.815945397824491 0.492985775081087 0.83526695 0.2524702 prediction 0.631890795648982 Functional Loss - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162280047 chr2:162280049 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_52497 0 0 0 0 0 exosome 0.500262367078704 0.500231401942153 0.6705339 6.19302731001969e-05 hm5C_site_47849 DeepMRMD:0.6705339;iRNA_m5C:6.19302731001969e-05 47850 chr12 57389800 57389800 1 + G T UCEC 57389797 + 57389777 57389817 41 GCCTACGTGGCCGTCTTTGTCATGTGCTGGCTGCCCTATCA GCCTACGTGGCCGTCTTTGTCATTTGCTGGCTGCCCTATCA < 41bp 0.815943448367729 0.435337112296487 0.8293276 0.3626786 prediction 0.631886896735457 Functional Loss - GPR182 ENSG00000166856 CDS Human protein_coding chr12:57389797 chr12:57389800 nonsynonymous SNV 0.064 0 24 hm5C_associated_SNPs_52498 0 0 0 0 0 nucleus 0.500231643831108 0.500231641922133 0.6586552 3.81795151049857e-09 hm5C_site_47850 DeepMRMD:0.6586552;iRNA_m5C:3.81795151049857e-09 47851 chr15 40764099 40764099 1 + G T UCEC 40764096 + 40764076 40764116 41 GCCTACCGCAACAAGTTTGGCGAGATCCGAGAGTACCAGCA GCCTACCGCAACAAGTTTGGCGATATCCGAGAGTACCAGCA < 41bp 0.8159368957947 0.463777101887823 0.8898047 0.6877121 prediction 0.631873791589401 Functional Loss - CHST14 ENSG00000169105 CDS Human protein_coding chr15:40764096 chr15:40764099 nonsynonymous SNV 0.997 1 24 hm5C_associated_SNPs_52499 0 0 1 0 0 exosome 0.500231643927766 0.500231643921089 0.4041852 1.33533184509815e-11 hm5C_site_47851 DeepMRMD:0.4041852;iRNA_m5C:1.33533184509815e-11 47852 chr10 25464627 25464627 1 + A C LUSC 25464623 + 25464603 25464643 41 ACCTCTACACCGGGGACTCCCACCAGCTGAAGCGAGCCAAC ACCTCTACACCGGGGACTCCCACCCGCTGAAGCGAGCCAAC < 41bp 0.869151745310694 0.553218865471687 0.8147696 0.30156785 prediction 0.631865759678013 Functional Loss - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25464623 chr10:25464627 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_52500 0 0 0 0 0 Endoplasmic reticulum 0.500231643941563 0.500231646355031 0.6295392 0 hm5C_site_47852 DeepMRMD:0.6295392;iRNA_m5C:0 47853 chr16 68112664 68112664 1 + G T GBM 68112661 + 68112641 68112681 41 TGTCTGCTCAGGGACAAGTCCAAGAAACTGGCGGAGCAGGC TGTCTGCTCAGGGACAAGTCCAATAAACTGGCGGAGCAGGC < 41bp 0.815926452344881 0.453289160633291 0.6809217 0.26781315 prediction 0.631852904689763 Functional Loss - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68112661 chr16:68112664 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_52501 0 0 1 0 1 Ribosome 0.500231643921102 0.500231643996664 0.3618434 0 hm5C_site_47853 DeepMRMD:0.3618434;iRNA_m5C:0 47854 chr19 17885887 17885887 1 + G T LUSC 17885885 + 17885865 17885905 41 AGATTTCCTGGAGCCCGATTCAGGGGTGAGTGATGTGGGAG AGATTTCCTGGAGCCCGATTCATGGGTGAGTGATGTGGGAG < 41bp 0.827698454898776 0.511777686090823 0.95899254 0.8836874 prediction 0.631841537615905 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885885 chr19:17885887 nonsynonymous SNV 0.964 0 23 hm5C_associated_SNPs_52502 0 0 1 0 2 Cytosol 0.500231643921089 0.50023164392094 0.15061028 2.98205904414317e-13 hm5C_site_47854 DeepMRMD:0.15061028;iRNA_m5C:2.98205904414317e-13 47855 chr6 116938093 116938093 1 + G T rs139745647 116938090 + 116938070 116938110 41 CTCCCCTGGCTCCGGCCAGACAAGACCTCGCGGCACCACCT CTCCCCTGGCTCCGGCCAGACAATACCTCGCGGCACCACCT < 41bp 0.866294993959335 0.550390627326097 0.40471143 0.1499469 prediction 0.631808733266477 Functional Loss - RSPH4A ENSG00000111834 CDS Human protein_coding chr6:116938090 chr6:116938093 nonsynonymous SNV 0.011 2 24 hm5C_associated_SNPs_52503 0 0 0 0 0 exosome 0.500231643919361 0.500231643936798 0 0 hm5C_site_47855 DeepMRMD:0;iRNA_m5C:0 47856 chr3 126915964 126915964 1 + G T LUAD 126915961 + 126915941 126915981 41 ACTCCTTGGCTTCTCCCACTCTGGGCGGGGCCACCTCCAGC ACTCCTTGGCTTCTCCCACTCTGTGCGGGGCCACCTCCAGC < 41bp 0.8655542938756 0.549651224466989 0.30064505 0.1931431 prediction 0.631806138817223 Functional Loss - C3orf56 ENSG00000214324 CDS Human lincRNA chr3:126915961 chr3:126915964 nonsynonymous SNV 0.010 2 24 hm5C_associated_SNPs_52504 0 0 0 0 0 unknown 0.500231643920744 0.500231555422399 0 1.76996689749132e-07 hm5C_site_47856 DeepMRMD:0;iRNA_m5C:1.76996689749132e-07 47857 chr10 26506829 26506829 1 + G T LUAD 26506827 + 26506807 26506847 41 GCGGCGGGAGCCAACCCCCGCGGGCCGCCGCCCGGAAGGCC GCGGCGGGAGCCAACCCCCGCGTGCCGCCGCCCGGAAGGCC < 41bp 0.838973931720606 0.523082406112765 0.88626724 0.5882642 prediction 0.631783051215681 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26506827 chr10:26506829 synonymous SNV . 0 23 hm5C_associated_SNPs_52505 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.59600608 0 hm5C_site_47857 DeepMRMD:0.59600608;iRNA_m5C:0 47858 chr2 62132863 62132863 1 + A C PAAD 62132859 + 62132839 62132879 41 GCAAACCCCTGAGCGGGCTGCTGAATGCGCTGGCCCAGGAC GCAAACCCCTGAGCGGGCTGCTGACTGCGCTGGCCCAGGAC < 41bp 0.874027228443828 0.558144928607428 0.91007364 0.7283491 prediction 0.631764599672801 Functional Loss - COMMD1 ENSG00000173163 CDS Human protein_coding chr2:62132859 chr2:62132863 nonsynonymous SNV 0.555 1 25 hm5C_associated_SNPs_52506 0 0 1 0 0 Cytosol 0.500231643921159 0.500231646678737 0.36344908 0 hm5C_site_47858 DeepMRMD:0.36344908;iRNA_m5C:0 47859 chr20 58342374 58342374 1 + G T LUSC 58342371 + 58342351 58342391 41 CCCAGACCTCTGGAGAGATCCGTGGGCCAGCTCCCCAGCCC CCCAGACCTCTGGAGAGATCCGTTGGCCAGCTCCCCAGCCC < 41bp 0.815868377041132 0.449892454313343 0.86357594 0.24931014 prediction 0.631736754082263 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58342371 chr20:58342374 synonymous SNV . 0 24 hm5C_associated_SNPs_52507 0 0 0 0 1 exosome 0.500231167274194 0.500232821781948 0.72715188 0 hm5C_site_47859 DeepMRMD:0.72715188;iRNA_m5C:0 47860 chr7 150094978 150094978 1 + G T SKCM 150094975 + 150094955 150094995 41 CATCCACCAGCGCATCCACACGGGTGAGCGGCCCTACCCGT CATCCACCAGCGCATCCACACGGTTGAGCGGCCCTACCCGT < 41bp 0.868215763996897 0.5523552552543 0.91037405 0.39209062 prediction 0.631721017485194 Functional Loss - ZNF775 ENSG00000196456 CDS Human protein_coding chr7:150094975 chr7:150094978 nonsynonymous SNV 0.255 3 24 hm5C_associated_SNPs_52508 0 0 1 0 0 Cytosol 0.500231643920988 0.500231643921015 0.8207481 0 hm5C_site_47860 DeepMRMD:0.8207481;iRNA_m5C:0 47861 chr11 7111057 7111057 1 + G T LUSC 7111054 + 7111034 7111074 41 CCCGGGGTTTTGCCCCCTCGCCCGGAGAGTACACCCACCGC CCCGGGGTTTTGCCCCCTCGCCCTGAGAGTACACCCACCGC < 41bp 0.815849573411102 0.438401737302834 0.23043835 0.21189514 prediction 0.631699146822204 Functional Loss - RBMXL2 ENSG00000170748 CDS Human protein_coding chr11:7111054 chr11:7111057 stopgain 0.011 0 24 hm5C_associated_SNPs_52509 0 0 0 0 0 exosome 0.500231643921093 0.500730930011258 0 0 hm5C_site_47861 DeepMRMD:0;iRNA_m5C:0 47862 chr7 139221070 139221070 1 + A C KIRC 139221066 + 139221046 139221086 41 GCCATCGCGGTCCTTCTGTTCGCCATCTTGGTGGTGATGAG GCCATCGCGGTCCTTCTGTTCGCCCTCTTGGTGGTGATGAG < 41bp 0.815848872690433 0.413026342052938 0.34309793 0.022783458 prediction 0.631697745380867 Functional Loss - CLEC2L ENSG00000236279 CDS Human protein_coding chr7:139221066 chr7:139221070 nonsynonymous SNV 0.990 0 25 hm5C_associated_SNPs_52510 0 0 0 0 2 exosome 0.500181254396658 0.500231659353645 0 0 hm5C_site_47862 DeepMRMD:0;iRNA_m5C:0 Amyotrophic Lateral Sclerosis (ALS) 47863 chr11 67258281 67258281 1 + G T SARC 67258278 + 67258258 67258298 41 GACAACGTCAAGGCCTACTTCAAGCGGGGCAAGGCCCACGC GACAACGTCAAGGCCTACTTCAATCGGGGCAAGGCCCACGC < 41bp 0.874789719305738 0.558954541230388 0.54894364 0.18247926 prediction 0.631670356150698 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67258278 chr11:67258281 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_52511 0 0 1 0 1 Ribosome 0.500231643921139 0.500231643922451 0.0978872799999999 0 hm5C_site_47863 DeepMRMD:0.0978872799999999;iRNA_m5C:0 47864 chr12 50232354 50232354 1 + G T THCA 50232351 + 50232331 50232371 41 AATCTGATTGGGCATGTCACCTCGGATGGCAAGGGAGTGGA AATCTGATTGGGCATGTCACCTCTGATGGCAAGGGAGTGGA < 41bp 0.848186849110963 0.53236926116565 0.6613915 0.1882911 prediction 0.631635175890627 Functional Loss - BCDIN3D ENSG00000186666 CDS Human protein_coding chr12:50232351 chr12:50232354 synonymous SNV . 0 24 hm5C_associated_SNPs_52512 0 0 0 0 1 Ribosome 0.500231641606904 0.500218734326359 0.322783 2.58145610907423e-05 hm5C_site_47864 DeepMRMD:0.322783;iRNA_m5C:2.58145610907423e-05 47865 chr15 29393906 29393906 1 + G T SARC 29393904 + 29393884 29393924 41 GCATGCCCCGGTCAGCCTCTCAGGACTGCATCGAGACCACG GCATGCCCCGGTCAGCCTCTCATGACTGCATCGAGACCACG < 41bp 0.82896891091242 0.51315919136179 0.91668105 0.46963584 prediction 0.63161943910126 Functional Loss - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29393904 chr15:29393906 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_52513 0 0 1 0 1 Cytosol 0.500231652752981 0.500254991329099 0.8333621 0 hm5C_site_47865 DeepMRMD:0.8333621;iRNA_m5C:0 47866 chr8 42591710 42591710 1 + G T LUAD 42591707 + 42591687 42591727 41 CTGATAGTGTCAGTAACAGGCTCGGTTCTGATTTTTACCCC CTGATAGTGTCAGTAACAGGCTCTGTTCTGATTTTTACCCC < 41bp 0.815808221494313 0.469554127867973 0.2454108 0.159253 prediction 0.631616442988626 Functional Loss - CHRNB3 ENSG00000147432 CDS Human protein_coding chr8:42591707 chr8:42591710 synonymous SNV . 0 24 hm5C_associated_SNPs_52514 0 0 0 0 1 exosome 0.500231643921092 0.500231643917059 0 8.06688049692639e-12 hm5C_site_47866 DeepMRMD:0;iRNA_m5C:8.06688049692639e-12 47867 chr16 27441400 27441400 1 + G T LUSC 27441397 + 27441377 27441417 41 GCCCGTGGGAGTCAGCATGCCGCGTGGCTGGGCCGCCCCCT GCCCGTGGGAGTCAGCATGCCGCTTGGCTGGGCCGCCCCCT < 41bp 0.880621747781464 0.564830135100384 0.32333237 0.17350769 prediction 0.631583225362161 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27441397 chr16:27441400 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_52515 0 0 0 0 2 nucleus 0.500231642969414 0.500231643921089 0 0 hm5C_site_47867 DeepMRMD:0;iRNA_m5C:0 47868 chr3 102187859 102187859 1 + G T LUAD 102187857 + 102187837 102187877 41 TTGAGAATGGCCGAAGCCAGCGGGGCCGGTTTTCTTTTGAA TTGAGAATGGCCGAAGCCAGCGTGGCCGGTTTTCTTTTGAA < 41bp 0.815781886467946 0.497784393533008 0.9058167 0.7438079 prediction 0.631563772935893 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102187857 chr3:102187859 synonymous SNV . 0 23 hm5C_associated_SNPs_52516 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.3240176 0 hm5C_site_47868 DeepMRMD:0.3240176;iRNA_m5C:0 47869 chr14 50081017 50081017 1 + G T UCEC 50081014 + 50080994 50081034 41 TCATTCCATTCCATCTCTGCCAAGATTTGGATACCGCAAAA TCATTCCATTCCATCTCTGCCAATATTTGGATACCGCAAAA < 41bp 0.81578123706081 0.472495344461769 0.28236184 0.12565926 prediction 0.63156247412162 Functional Loss - LRR1 ENSG00000165501 CDS Human protein_coding chr14:50081014 chr14:50081017 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52517 0 0 1 2 1 Ribosome 0.500231649113777 0.500231401454999 0 4.95317556525876e-07 hm5C_site_47869 DeepMRMD:0;iRNA_m5C:4.95317556525876e-07 47870 chrX 78216053 78216053 1 + G T UCEC 78216050 + 78216030 78216070 41 GACAAATACACTGAAACATTCAAGATGGGTAGCAACAGTAC GACAAATACACTGAAACATTCAATATGGGTAGCAACAGTAC < 41bp 0.852766787460069 0.536993889140783 0.2768993 0.064449936 prediction 0.631545796638572 Functional Loss - P2RY10 ENSG00000078589 CDS Human protein_coding chrX:78216050 chrX:78216053 nonsynonymous SNV 0.981 1 24 hm5C_associated_SNPs_52518 0 0 0 0 1 exosome 0.500231643918039 0.50023150819008 0 2.71455919298447e-07 hm5C_site_47870 DeepMRMD:0;iRNA_m5C:2.71455919298447e-07 47871 chr16 67915010 67915010 1 + A C UCEC 67915006 + 67914986 67915026 41 AATGGCCTTCAGGAAAAGCACAAGAGCCTGGCCTTCCACCG AATGGCCTTCAGGAAAAGCACAAGCGCCTGGCCTTCCACCG < 41bp 0.883000751800615 0.56723574976037 0.40582305 0.37910044 prediction 0.631530004080489 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915006 chr16:67915010 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_52519 0 0 1 0 2 Cytosol 0.500231644061821 0.500231643921668 0 2.8030688881131e-10 hm5C_site_47871 DeepMRMD:0;iRNA_m5C:2.8030688881131e-10 47872 chr1 32498920 32498920 1 + G T UCEC 32498917 + 32498897 32498937 41 GCCCATGCCATGGAGGAAGTCAAGAAATTTCTAGTACCGGT GCCCATGCCATGGAGGAAGTCAATAAATTTCTAGTACCGGT < 41bp 0.864375387315116 0.548610670583817 0.1259776 0.13163835 prediction 0.631529433462599 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32498917 chr1:32498920 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52520 0 0 1 0 1 Nucleus 0.500231644587031 0.500231643966524 0 1.24101395826415e-09 hm5C_site_47872 DeepMRMD:0;iRNA_m5C:1.24101395826415e-09 47873 chr11 57798860 57798860 1 + A C rs138730895 57798856 + 57798836 57798876 41 GCTTTTGTGTCCTGGGGCACCTGCATCCGTCTGGCAGCTGC GCTTTTGTGTCCTGGGGCACCTGCCTCCGTCTGGCAGCTGC < 41bp 0.815754521877457 0.441959028610973 0.51794416 0.2575063 prediction 0.631509043754915 Functional Loss - OR6Q1 ENSG00000172381 CDS Human other chr11:57798856 chr11:57798860 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_52521 0 0 0 0 0 unknown 0.500231658232484 0.50023164387698 0.03588832 2.87110073493579e-08 hm5C_site_47873 DeepMRMD:0.03588832;iRNA_m5C:2.87110073493579e-08 47874 chr16 29856149 29856149 1 + G T SARC 29856147 + 29856127 29856167 41 ACCCGGGACGCCCTGCAACGCAGCGTCCAGCTGGCCATCGA ACCCGGGACGCCCTGCAACGCATCGTCCAGCTGGCCATCGA < 41bp 0.822882803151732 0.507137588955076 0.37008864 0.04002136 prediction 0.631490428393312 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29856147 chr16:29856149 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_52522 0 0 0 0 1 Nucleus 0.500231643934176 0.500231645174096 0 0 hm5C_site_47874 DeepMRMD:0;iRNA_m5C:0 47875 chr6 84772691 84772691 1 + G T READ 84772688 + 84772668 84772708 41 TTTGTGCTGACCTTGCTGACCAAGACAGGAGCCCCACACCA TTTGTGCTGACCTTGCTGACCAATACAGGAGCCCCACACCA < 41bp 0.815739854817131 0.451149546696807 0.17170054 0.09166393 prediction 0.631479709634262 Functional Loss - MRAP2 ENSG00000135324 CDS Human protein_coding chr6:84772688 chr6:84772691 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_52523 0 0 0 0 1 Endoplasmic reticulum 0.500231641614415 0.500231643927248 0 0 hm5C_site_47875 DeepMRMD:0;iRNA_m5C:0 47876 chr7 12680046 12680046 1 + G T UCEC 12680043 + 12680023 12680063 41 GACAAACCGCTCATTATTTACAAGAATGGAACATCAAAGAA GACAAACCGCTCATTATTTACAATAATGGAACATCAAAGAA < 41bp 0.815737940249293 0.464075291495349 0.069391936 0.035736054 prediction 0.631475880498586 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12680043 chr7:12680046 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52524 0 0 1 0 2 nucleolus 0.500231643921093 0.500231643921094 0 0 hm5C_site_47876 DeepMRMD:0;iRNA_m5C:0 47877 chr19 15726455 15726455 1 + G T LUAD 15726452 + 15726432 15726472 41 CGCTGCTGAGCCTGTCTTGGCTGGGCCTCAGGCCGGTGGCA CGCTGCTGAGCCTGTCTTGGCTGTGCCTCAGGCCGGTGGCA < 41bp 0.81573754224003 0.469154909279601 0.8134475 0.23841497 prediction 0.631475084480061 Functional Loss - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15726452 chr19:15726455 . 0.005 2 24 hm5C_associated_SNPs_52525 0 0 0 0 1 unknown 0.500231643921092 0.500231640335818 0.626895 7.1705481552442e-09 hm5C_site_47877 DeepMRMD:0.626895;iRNA_m5C:7.1705481552442e-09 47878 chr11 103908057 103908057 1 + A C LUAD 103908053 + 103908033 103908073 41 GGAACGCAACCCTCCCTTGGCGGAAGCCCTGCTCAGCGGAA GGAACGCAACCCTCCCTTGGCGGACGCCCTGCTCAGCGGAA < 41bp 0.873830251392272 0.558096748667069 0.8979224 0.8239444 prediction 0.631467005450405 Functional Loss - DDI1 ENSG00000170967 CDS Human protein_coding chr11:103908053 chr11:103908057 nonsynonymous SNV 0.088 0 25 hm5C_associated_SNPs_52526 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.147956 0 hm5C_site_47878 DeepMRMD:0.147956;iRNA_m5C:0 47879 chr12 4919294 4919294 1 + G T UCEC 4919291 + 4919271 4919311 41 CAACAGGATGCGGGAGACTTCCCGGAGGCCGGCGGGGGCGG CAACAGGATGCGGGAGACTTCCCTGAGGCCGGCGGGGGCGG < 41bp 0.868473390885485 0.552746271871386 0.9043642 0.76479614 prediction 0.631454238028197 Functional Loss - KCNA6 ENSG00000151079 CDS Human protein_coding chr12:4919291 chr12:4919294 synonymous SNV . 0 24 hm5C_associated_SNPs_52527 0 0 0 0 0 exosome 0.500231643419013 0.500231404026271 0.27913612 4.78785483926103e-07 hm5C_site_47879 DeepMRMD:0.27913612;iRNA_m5C:4.78785483926103e-07 47880 chr1 248525228 248525228 1 + G T LUAD 248525225 + 248525205 248525245 41 TCACTGTGCCCAAGATGCTCCTGGACCAGGTCATGGGTGTG TCACTGTGCCCAAGATGCTCCTGTACCAGGTCATGGGTGTG < 41bp 0.81571581307928 0.457017021695439 0.060658842 0.022030085 prediction 0.63143162615856 Functional Loss - OR2T4 ENSG00000196944 CDS Human protein_coding chr1:248525225 chr1:248525228 nonsynonymous SNV 0.014 3 24 hm5C_associated_SNPs_52528 0 0 0 0 0 unknown 0.500232201496071 0.500231643921093 0 1.11514995748685e-06 hm5C_site_47880 DeepMRMD:0;iRNA_m5C:1.11514995748685e-06 47881 chr16 30490510 30490510 1 + G T LUAD 30490508 + 30490488 30490528 41 ATCTGCAGGGTCCCATGCTGCAGGGGCGCCCTGGTTTTCAG ATCTGCAGGGTCCCATGCTGCATGGGCGCCCTGGTTTTCAG < 41bp 0.831318488083061 0.515605158804022 0.9210145 0.2090008 prediction 0.631426658558079 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30490508 chr16:30490510 nonsynonymous SNV 0.021 2 23 hm5C_associated_SNPs_52529 0 0 0 0 1 Cytosol 0.50023164392109 0.500231643778758 0.842029 2.84663181915334e-10 hm5C_site_47881 DeepMRMD:0.842029;iRNA_m5C:2.84663181915334e-10 47882 chr22 23437951 23437951 1 + G T LUAD 23437949 + 23437929 23437969 41 CCCGGAGAATTGACCGCCACCTGCGCTCAGAGAGCCAGCGG CCCGGAGAATTGACCGCCACCTTCGCTCAGAGAGCCAGCGG < 41bp 0.816135391403912 0.500423311642335 0.13117611 0.040264577 prediction 0.631424159523154 Functional Loss - GNAZ ENSG00000128266 CDS Human protein_coding chr22:23437949 chr22:23437951 synonymous SNV . 0 23 hm5C_associated_SNPs_52530 0 0 0 0 0 Ribosome 0.500231645670633 0.500231643920315 0 3.50063467102757e-09 hm5C_site_47882 DeepMRMD:0;iRNA_m5C:3.50063467102757e-09 47883 chr9 127119009 127119009 1 + G T rs137977915 127119006 + 127118986 127119026 41 ACCAAGGGTGGCCACGACGCCAGGGGACCCAGGAAGAACTT ACCAAGGGTGGCCACGACGCCAGTGGACCCAGGAAGAACTT < 41bp 0.866650325974069 0.550942181327268 0.9068332 0.6577683 prediction 0.631416289293602 Functional Loss - LOC100129034 ENSG00000136930 UTR3 Human protein_coding chr9:127119006 chr9:127119009 . . 0 24 hm5C_associated_SNPs_52531 0 0 0 0 0 unknown 0.500231644327044 0.500231657844319 0.4981298 0 hm5C_site_47883 DeepMRMD:0.4981298;iRNA_m5C:0 47884 chr4 119810229 119810229 1 + G T BLCA 119810226 + 119810206 119810246 41 TTTTATCTGCATTTCCATGACTGGAGGGGCGCCCTGGGGGT TTTTATCTGCATTTCCATGACTGTAGGGGCGCCCTGGGGGT < 41bp 0.815696085998155 0.474030723728293 0.37217987 0.31114376 prediction 0.63139217199631 Functional Loss - SYNPO2 ENSG00000172403 CDS Human protein_coding chr4:119810226 chr4:119810229 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_52532 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_47884 DeepMRMD:0;iRNA_m5C:0 47885 chr6 119226836 119226836 1 + G T BRCA 119226833 + 119226813 119226853 41 CTAGGCTGATGCACCTAATCCAGGACTCATTCCAGATGCAG CTAGGCTGATGCACCTAATCCAGTACTCATTCCAGATGCAG < 41bp 0.852631895260513 0.536945171557115 0.3315401 0.07218912 prediction 0.631373447406796 Functional Loss - ASF1A ENSG00000111875 CDS Human protein_coding chr6:119226833 chr6:119226836 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52533 0 0 1 0 1 Cytosol 0.500231642734433 0.500231642162064 0 1.1447376380147e-09 hm5C_site_47885 DeepMRMD:0;iRNA_m5C:1.1447376380147e-09 47886 chr17 4926984 4926984 1 + G T UCEC 4926982 + 4926962 4927002 41 AGCAGGAGCAGCTACGGCTGCAGGGACTGCAGGGCTCTGGG AGCAGGAGCAGCTACGGCTGCATGGACTGCAGGGCTCTGGG < 41bp 0.828338043981961 0.512662247115577 0.91566217 0.4763251 prediction 0.631351593732768 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926982 chr17:4926984 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_52534 0 0 1 0 0 Ribosome 0.500231643771139 0.500231640086509 0.83132434 7.3692596469499e-09 hm5C_site_47886 DeepMRMD:0.83132434;iRNA_m5C:7.3692596469499e-09 47887 chr14 62547585 62547585 1 + G T LUAD 62547583 + 62547563 62547603 41 GACCAATTTGCAGGTGCCATCCGGGGTCTCAGAGCCCATCT GACCAATTTGCAGGTGCCATCCTGGGTCTCAGAGCCCATCT < 41bp 0.839587690730415 0.523921263909262 0.9370292 0.8855972 prediction 0.631332853642306 Functional Loss - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62547583 chr14:62547585 nonsynonymous SNV 0.028 1 23 hm5C_associated_SNPs_52535 0 0 0 0 1 exosome 0.500231643844446 0.500231643920982 0.102864 0 hm5C_site_47887 DeepMRMD:0.102864;iRNA_m5C:0 47888 chr8 90782093 90782093 1 + A C STAD 90782089 + 90782069 90782109 41 CCAGAAGGAGGGACAATTATCTATATGCCACCTGAAAACTA CCAGAAGGAGGGACAATTATCTATCTGCCACCTGAAAACTA < 41bp 0.815656118198208 0.415240461631119 0.5742575 0.17641038 prediction 0.631312236396415 Functional Loss - RIPK2 ENSG00000104312 CDS Human protein_coding chr8:90782089 chr8:90782093 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_52536 0 0 1 0 2 chromatin 0.500231643921156 0.500231643820184 0.148515 2.01944683198008e-10 hm5C_site_47888 DeepMRMD:0.148515;iRNA_m5C:2.01944683198008e-10 47889 chr5 140712192 140712192 1 + G T STAD 140712190 + 140712170 140712210 41 AGAGTCTCGTGGTGGCCGTCCAGGACCACGGCCAGCCCCCG AGAGTCTCGTGGTGGCCGTCCATGACCACGGCCAGCCCCCG < 41bp 0.837758845380912 0.522116525495772 0.81631726 0.20660555 prediction 0.631284639770279 Functional Loss - PCDHGA1 ENSG00000204956 CDS Human protein_coding chr5:140712190 chr5:140712192 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_52537 0 0 0 0 0 exosome 0.500231643850936 0.500231643981826 0.63263452 0 hm5C_site_47889 DeepMRMD:0.63263452;iRNA_m5C:0 47890 chr19 590323 590323 1 + G T rs186019555 590320 + 590300 590340 41 CGGGGGCCCAAGGTGTCGTTCTCGTGCCGCGGGGCGGCCTC CGGGGGCCCAAGGTGTCGTTCTCTTGCCGCGGGGCGGCCTC < 41bp 0.840153924897002 0.52452181008863 0.35025024 0.17381209 prediction 0.631264229616744 Functional Loss - HCN2 ENSG00000099822 CDS Human protein_coding chr19:590320 chr19:590323 synonymous SNV . 0 24 hm5C_associated_SNPs_52538 0 0 0 0 0 chromatin 0.500231643930678 0.500231643920525 0 2.03059791203941e-11 hm5C_site_47890 DeepMRMD:0;iRNA_m5C:2.03059791203941e-11 47891 chr10 75552552 75552552 1 + G T LUAD 75552549 + 75552529 75552569 41 AGAGAAGGCCGAGGGCGGGGCTGGGGAGGAGCACGACCTGT AGAGAAGGCCGAGGGCGGGGCTGTGGAGGAGCACGACCTGT < 41bp 0.815631089518687 0.449320392641682 0.86668605 0.8264338 prediction 0.631262179037373 Functional Loss - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75552549 chr10:75552552 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_52539 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921122 0.0805045 0 hm5C_site_47891 DeepMRMD:0.0805045;iRNA_m5C:0 47892 chr6 170175417 170175417 1 + G T UCEC 170175415 + 170175395 170175435 41 TTGGGCTCTGCTGCCTTTCCCCGAAGAACTCACTCGGCAAG TTGGGCTCTGCTGCCTTTCCCCTAAGAACTCACTCGGCAAG < 41bp 0.815605316367517 0.486767955572353 0.7515131 0.12299538 prediction 0.631210632735034 Functional Loss - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170175415 chr6:170175417 stopgain 0.000 0 23 hm5C_associated_SNPs_52540 0 0 1 0 2 chromatin 0.500231643921092 0.500231643921092 0.5030262 0 hm5C_site_47892 DeepMRMD:0.5030262;iRNA_m5C:0 47893 chr1 247587430 247587430 1 + G T THYM 247587428 + 247587408 247587448 41 CGTGGTGTTCCAGGGGGCGGCAGGGATTGGGAAAACAATCC CGTGGTGTTCCAGGGGGCGGCATGGATTGGGAAAACAATCC < 41bp 0.827790552478239 0.512210077540887 0.89372957 0.44780916 prediction 0.631160949874705 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247587428 chr1:247587430 nonsynonymous SNV 0.333 5 23 hm5C_associated_SNPs_52541 0 0 0 0 0 Nucleus 0.500231643921093 0.500231643921092 0.78745914 2.22044604925031e-16 hm5C_site_47893 DeepMRMD:0.78745914;iRNA_m5C:2.22044604925031e-16 47894 chr7 107399549 107399549 1 + G T COAD 107399546 + 107399526 107399566 41 CACCACCACCTCCACGATTGCAGGGTCCGCCTTCTCAAACC CACCACCACCTCCACGATTGCAGTGTCCGCCTTCTCAAACC < 41bp 0.872006045672071 0.556434939900482 0.94767517 0.86198044 prediction 0.631142211543179 Functional Loss - CBLL1 ENSG00000105879 CDS Human protein_coding chr7:107399546 chr7:107399549 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52542 0 0 1 0 0 cytosol 0.500231643921092 0.500231643921066 0.17138946 5.35127497869325e-14 hm5C_site_47894 DeepMRMD:0.17138946;iRNA_m5C:5.35127497869325e-14 47895 chr17 65027667 65027667 1 + G T UCEC 65027664 + 65027644 65027684 41 TCTCCATCTCTCCCTCTCTCCAAGACTCTGGCAGTGGCCTA TCTCCATCTCTCCCTCTCTCCAATACTCTGGCAGTGGCCTA < 41bp 0.815552374200119 0.451522556070629 0.0627383 0.020956665 prediction 0.631104748400238 Functional Loss - CACNG4 ENSG00000214167 CDS Human other chr17:65027664 chr17:65027667 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_52543 0 0 0 0 0 Endoplasmic reticulum 0.500231629610608 0.500231643921092 0 0 hm5C_site_47895 DeepMRMD:0;iRNA_m5C:0 47896 chr1 158225877 158225877 1 + G T UCEC 158225874 + 158225854 158225894 41 GCTTCTTGCAGTTAGCTTATCAAGGATCAGACTTTGTGAGC GCTTCTTGCAGTTAGCTTATCAATGATCAGACTTTGTGAGC < 41bp 0.815542458027751 0.444426937202854 0.87435156 0.11812374 prediction 0.631084916055503 Functional Loss - CD1A ENSG00000158477 CDS Human protein_coding chr1:158225874 chr1:158225877 stopgain 0.006 0 24 hm5C_associated_SNPs_52544 0 0 0 0 1 exosome 0.500260043308154 0.500232679755711 0.74870312 5.47271048871867e-05 hm5C_site_47896 DeepMRMD:0.74870312;iRNA_m5C:5.47271048871867e-05 47897 chr12 111321859 111321859 1 + G T GBM 111321856 + 111321836 111321876 41 CTCAAGGCAAAGAAGCATGTCAAGAAGAACAGGGGAGAGAG CTCAAGGCAAAGAAGCATGTCAATAAGAACAGGGGAGAGAG < 41bp 0.815528853709315 0.44728639705337 0.4622233 0.26830846 prediction 0.631057707418629 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111321856 chr12:111321859 nonsynonymous SNV 0.177 2 24 hm5C_associated_SNPs_52545 0 0 0 0 1 exosome 0.500231643920012 0.500231643921091 0 0 hm5C_site_47897 DeepMRMD:0;iRNA_m5C:0 47898 chr11 69458759 69458759 1 + G T STAD 69458757 + 69458737 69458777 41 CTTCGTTGCCCTCTGTGCCACAGGTAGGGCAGGCCCGGCAG CTTCGTTGCCCTCTGTGCCACATGTAGGGCAGGCCCGGCAG < 41bp 0.823079331706998 0.507557544722697 0.4404776 0.29990232 prediction 0.631043573968602 Functional Loss - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69458757 chr11:69458759 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_52546 0 0 1 0 1 Ribosome 0.500231643937066 0.500231717598024 0 0 hm5C_site_47898 DeepMRMD:0;iRNA_m5C:0 47899 chr3 169710634 169710634 1 + G T GBM 169710631 + 169710611 169710651 41 TGAGGAGGGGAAAGTAGGACCAGGAAATCATGGAACAGAAG TGAGGAGGGGAAAGTAGGACCAGTAAATCATGGAACAGAAG < 41bp 0.851332768441638 0.535820652571095 0.8611327 0.6710986 prediction 0.631024231741086 Functional Loss - SEC62 ENSG00000008952 CDS Human protein_coding chr3:169710631 chr3:169710634 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_52547 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.3800682 0 hm5C_site_47899 DeepMRMD:0.3800682;iRNA_m5C:0 47900 chr2 231256883 231256883 1 + G T LUAD 231256880 + 231256860 231256900 41 TGAAATCAAAGGAGGCTACGCAAGATCAAAGAACTGGAGGC TGAAATCAAAGGAGGCTACGCAATATCAAAGAACTGGAGGC < 41bp 0.815500431424312 0.442142054566686 0.18993941 0.04490772 prediction 0.631000862848625 Functional Loss - SP140L ENSG00000185404 CDS Human protein_coding chr2:231256880 chr2:231256883 nonsynonymous SNV 0.029 2 24 hm5C_associated_SNPs_52548 0 0 1 0 2 chromatin 0.50023164119272 0.500231643916571 0 0 hm5C_site_47900 DeepMRMD:0;iRNA_m5C:0 47901 chr20 55033746 55033746 1 + G T UCEC 55033744 + 55033724 55033764 41 CTGCCGCGCTGGGGCACCTCCAGGCGGAGGCTGAGAAGCTG CTGCCGCGCTGGGGCACCTCCATGCGGAGGCTGAGAAGCTG < 41bp 0.834632915911017 0.519138223005841 0.8575436 0.35758728 prediction 0.630989385810351 Functional Loss - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55033744 chr20:55033746 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_52549 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.7150872 0 hm5C_site_47901 DeepMRMD:0.7150872;iRNA_m5C:0 47902 chr10 75556724 75556724 1 + G T HNSC 75556722 + 75556702 75556742 41 TGCTCAACCAGGGAGTGTGGCAGGGGCTGGGCCAGGCCCCA TGCTCAACCAGGGAGTGTGGCATGGGCTGGGCCAGGCCCCA < 41bp 0.840611277247881 0.525118548932479 0.93109983 0.8568501 prediction 0.630985456630804 Functional Loss - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75556722 chr10:75556724 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_52550 0 0 1 0 1 Cytosol 0.500231643921213 0.500231643827608 0.14849946 1.87208915036763e-10 hm5C_site_47902 DeepMRMD:0.14849946;iRNA_m5C:1.87208915036763e-10 47903 chr12 6646779 6646779 1 + G T LUSC 6646777 + 6646757 6646797 41 TCCATGCCATCACTGCCACCCAGAAGACTGTGGATGGCCCC TCCATGCCATCACTGCCACCCATAAGACTGTGGATGGCCCC < 41bp 0.831564520275951 0.516073090049024 0.6172753 0.06589344 prediction 0.630982860453855 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646777 chr12:6646779 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52551 0 0 1 0 1 Ribosome 0.500231643921088 0.500231643950598 0.2345506 0 hm5C_site_47903 DeepMRMD:0.2345506;iRNA_m5C:0 47904 chr2 204255806 204255806 1 + G T LUSC 204255803 + 204255783 204255823 41 CATGAAGATGGGTGGGCTGCCGCGTACAACACCTCCAACTC CATGAAGATGGGTGGGCTGCCGCTTACAACACCTCCAACTC < 41bp 0.815454511154317 0.470554114826382 0.23386973 0.026120365 prediction 0.630909022308633 Functional Loss - ABI2 ENSG00000138443 CDS Human protein_coding chr2:204255803 chr2:204255806 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52552 0 0 1 0 2 Cytosol 0.500231644077266 0.500231646358782 0 0 hm5C_site_47904 DeepMRMD:0;iRNA_m5C:0 47905 chr1 214170144 214170144 1 + G T LUAD 214170141 + 214170121 214170161 41 AGATGCCATGATGCCTTTTCCAGGAGCAACCATAATTTCCC AGATGCCATGATGCCTTTTCCAGTAGCAACCATAATTTCCC < 41bp 0.815449929937866 0.476171068815113 0.89256066 0.33058324 prediction 0.630899859875733 Functional Loss - PROX1 ENSG00000117707 CDS Human protein_coding chr1:214170141 chr1:214170144 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52553 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0.78512132 0 hm5C_site_47905 DeepMRMD:0.78512132;iRNA_m5C:0 47906 chr20 58318262 58318262 1 + G T LUSC 58318259 + 58318239 58318279 41 AGCAAACTGGCCACCCTGGGCAGGATCTTCAAACCCTGGAA AGCAAACTGGCCACCCTGGGCAGTATCTTCAAACCCTGGAA < 41bp 0.815447671419873 0.456971656220848 0.31199104 0.06547803 prediction 0.630895342839746 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58318259 chr20:58318262 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52554 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47906 DeepMRMD:0;iRNA_m5C:0 47907 chr16 58497641 58497641 1 + G T rs574167371 58497638 + 58497618 58497658 41 TGGCTGCCCGCACCTGCACCCGCGCGTCGGCGGCGCCGAAG TGGCTGCCCGCACCTGCACCCGCTCGTCGGCGGCGCCGAAG < 41bp 0.824217456835939 0.508770066178588 0.849552 0.118454695 prediction 0.630894781314702 Functional Loss - NDRG4 ENSG00000103034 UTR5 Human protein_coding chr16:58497638 chr16:58497641 . . 0 24 hm5C_associated_SNPs_52555 0 0 1 0 1 Exosome 0.500231080547218 0.500232358393091 0.699104 0 hm5C_site_47907 DeepMRMD:0.699104;iRNA_m5C:0 47908 chr22 50946826 50946826 1 + G T COAD 50946823 + 50946803 50946843 41 CAGCCCATCCGCGACCTCACCAAGAACTGGGAGGTGGACGT CAGCCCATCCGCGACCTCACCAATAACTGGGAGGTGGACGT < 41bp 0.862751463616525 0.547335783545022 0.48435166 0.08939338 prediction 0.630831360143006 Functional Loss - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50946823 chr22:50946826 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52556 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_47908 DeepMRMD:0;iRNA_m5C:0 47909 chr7 134346514 134346514 1 + G T LUAD 134346511 + 134346491 134346531 41 TGGGTGCCTGTGGAAAGCTCCTGGCGTCTAAATGAGCGTCA TGGGTGCCTGTGGAAAGCTCCTGTCGTCTAAATGAGCGTCA < 41bp 0.815400391508672 0.456828885717199 0.33532798 0.1456666 prediction 0.630800783017344 Functional Loss - BPGM ENSG00000172331 CDS Human protein_coding chr7:134346511 chr7:134346514 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52557 0 0 1 0 0 Ribosome 0.500222455638244 0.500231630131187 0 0 hm5C_site_47909 DeepMRMD:0;iRNA_m5C:0 47910 chr9 139313053 139313053 1 + G T THYM 139313051 + 139313031 139313071 41 GTGTTGAACATGATGATGGGCGGAGGTGGCTCCTTCTCGGC GTGTTGAACATGATGATGGGCGTAGGTGGCTCCTTCTCGGC < 41bp 0.815390635904765 0.487296786079176 0.9073107 0.5757544 prediction 0.63078127180953 Functional Loss - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139313051 chr9:139313053 nonsynonymous SNV 0.733 4 23 hm5C_associated_SNPs_52558 0 0 1 0 2 Cytosol 0.500231644490507 0.500234290443227 0.6631126 0 hm5C_site_47910 DeepMRMD:0.6631126;iRNA_m5C:0 47911 chr6 26501921 26501921 1 + G T STAD 26501918 + 26501898 26501938 41 CCGAACGCGAGCGCCGAGCACTTGGAGCTACGCTGGTTCCG CCGAACGCGAGCGCCGAGCACTTTGAGCTACGCTGGTTCCG < 41bp 0.815381372365257 0.448272023026159 0.36057702 0.41055351 prediction 0.630762744730513 Functional Loss - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26501918 chr6:26501921 nonsynonymous SNV 0.271 1 24 hm5C_associated_SNPs_52559 0 0 0 0 0 nucleoplasm 0.500231482924833 0.50023240937209 0 0 hm5C_site_47911 DeepMRMD:0;iRNA_m5C:0 47912 chr11 67187062 67187062 1 + G T COAD 67187060 + 67187040 67187080 41 TGGACACAGTGCTGGCGCTGCTGGAGAAGCTGGAGGAGGAG TGGACACAGTGCTGGCGCTGCTTGAGAAGCTGGAGGAGGAG < 41bp 0.815354033695119 0.493688989490662 0.6229269 0.13488355 prediction 0.630708067390237 Functional Loss - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67187060 chr11:67187062 nonsynonymous SNV 0.933 1 23 hm5C_associated_SNPs_52560 0 0 0 0 1 exosome 0.500231458449781 0.500231641705499 0.2458538 0 hm5C_site_47912 DeepMRMD:0.2458538;iRNA_m5C:0 47913 chr9 84532354 84532354 1 + A C UCEC 84532350 + 84532330 84532370 41 GGAATTATCAGGGATACAGCCAGGAGACTGCCCCAAAAGAT GGAATTATCAGGGATACAGCCAGGCGACTGCCCCAAAAGAT < 41bp 0.829147387142755 0.513819512901743 0.9350085 0.9434165 prediction 0.630655748482023 Functional Loss - SPATA31D5P ENSG00000240632 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:84532350 chr9:84532354 . . 0 25 hm5C_associated_SNPs_52561 0 0 0 0 0 unknown 0.500231643934788 0.50023167965593 0 0 hm5C_site_47913 DeepMRMD:0;iRNA_m5C:0 47914 chr3 147128148 147128148 1 + G T LUSC 147128145 + 147128125 147128165 41 GCCCTGGGCCATCACCATCACCCGGGCCACGTCGGCTCCTA GCCCTGGGCCATCACCATCACCCTGGCCACGTCGGCTCCTA < 41bp 0.870375350175734 0.555051698018235 0.34972405 0.19461676 prediction 0.630647304314998 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147128145 chr3:147128148 synonymous SNV . 0 24 hm5C_associated_SNPs_52562 0 0 0 0 0 exosome 0.500231643920942 0.500231643920948 0 0 hm5C_site_47914 DeepMRMD:0;iRNA_m5C:0 47915 chr6 26597220 26597220 1 + G T LUAD 26597218 + 26597198 26597238 41 CGTGTCAGTCAACATGGAGGCAGAGGAATCGGAGAAGGCCG CGTGTCAGTCAACATGGAGGCATAGGAATCGGAGAAGGCCG < 41bp 0.829034626091119 0.513737314637804 0.89506775 0.40411445 prediction 0.63059462290663 Functional Loss - ABT1 ENSG00000146109 CDS Human protein_coding chr6:26597218 chr6:26597220 stopgain 0.005 0 23 hm5C_associated_SNPs_52563 0 0 1 0 0 Ribosome 0.50023164407552 0.500231643921662 0.7901355 3.07717407110886e-10 hm5C_site_47915 DeepMRMD:0.7901355;iRNA_m5C:3.07717407110886e-10 47916 chr1 200090030 200090030 1 + A C UCEC 200090026 + 200090006 200090046 41 TAGTGGCAAAACTTCGTTCTCTCCAGTTTGATCAACGAGAG TAGTGGCAAAACTTCGTTCTCTCCCGTTTGATCAACGAGAG < 41bp 0.815272675625016 0.409197222924375 0.32635984 0.014521629 prediction 0.630545351250033 Functional Loss - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200090026 chr1:200090030 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_52564 0 0 0 0 2 cytosol 0.500231658751392 0.500231643921094 0 2.96605955352192e-08 hm5C_site_47916 DeepMRMD:0;iRNA_m5C:2.96605955352192e-08 47917 chr9 37732384 37732384 1 + G T LUAD 37732382 + 37732362 37732402 41 GACTCGCGGCTCTGCACATCCAGGAACGGATCTACGCCTGT GACTCGCGGCTCTGCACATCCATGAACGGATCTACGCCTGT < 41bp 0.828985594770104 0.513721202810045 0.5152966 0.18819886 prediction 0.630528783920117 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37732382 chr9:37732384 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_52565 0 0 0 0 1 exosome 0.500237368523027 0.500245201158302 0.0305932 0 hm5C_site_47917 DeepMRMD:0.0305932;iRNA_m5C:0 47918 chr5 3599539 3599539 1 + G T PAAD 3599536 + 3599516 3599556 41 AATCCCTACCCCACCAAGGGCGAGAAGATCATGCTGGCCAT AATCCCTACCCCACCAAGGGCGATAAGATCATGCTGGCCAT < 41bp 0.815262535501601 0.445940877074759 0.2020326 0.07968104 prediction 0.630525071003202 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3599536 chr5:3599539 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_52566 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_47918 DeepMRMD:0;iRNA_m5C:0 47919 chr6 43029080 43029080 1 + G T UCEC 43029078 + 43029058 43029098 41 GGTCCCCCAGGCCAGGATGTCAGGCCTGGTGTTGGGGCAGC GGTCCCCCAGGCCAGGATGTCATGCCTGGTGTTGGGGCAGC < 41bp 0.815245319040542 0.493607331935017 0.9009136 0.44645602 prediction 0.630490638081084 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43029078 chr6:43029080 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_52567 0 0 1 0 1 Cytosol 0.500231643769472 0.50023164392082 0.8018272 0 hm5C_site_47919 DeepMRMD:0.8018272;iRNA_m5C:0 47920 chr1 68151204 68151204 1 + A C rs532285587 68151200 + 68151180 68151220 41 GACTTTGGAGGAATTCTCGGCTGGAGAGCAGAAGACCGAAA GACTTTGGAGGAATTCTCGGCTGGCGAGCAGAAGACCGAAA < 41bp 0.863575004611122 0.548330289131637 0.3306868 0.289778 prediction 0.63048943095897 Functional Loss - GADD45A ENSG00000116717 CDS Human protein_coding chr1:68151200 chr1:68151204 synonymous SNV . 0 25 hm5C_associated_SNPs_52568 0 0 1 0 1 Cytosol 0.500231644642122 0.500231643936736 0 1.4107701673538e-09 hm5C_site_47920 DeepMRMD:0;iRNA_m5C:1.4107701673538e-09 47921 chr14 54989263 54989263 1 + A C CESC 54989259 + 54989239 54989279 41 AAAAAGCAAATGAGACAAGTCAAGAATCCTTTTGGCTTAGA AAAAAGCAAATGAGACAAGTCAAGCATCCTTTTGGCTTAGA < 41bp 0.815235342470564 0.438420604881063 0.6145634 0.121142566 prediction 0.630470684941129 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:54989259 chr14:54989263 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_52569 0 0 0 0 2 Endoplasmic reticulum 0.500231643876212 0.50023164391213 0.2291268 0 hm5C_site_47921 DeepMRMD:0.2291268;iRNA_m5C:0 47922 chr6 170871001 170871001 1 + G T SARC 170870999 + 170870979 170871019 41 TGGAAGAGCAACAAAGGCAGCAGCAGCAACAACAACAGCAG TGGAAGAGCAACAAAGGCAGCATCAGCAACAACAACAGCAG < 41bp 0.815198023690844 0.494674386345805 0.33607563 0.019655347 prediction 0.630396047381689 Functional Loss - TBP ENSG00000112592 CDS Human protein_coding chr6:170870999 chr6:170871001 nonsynonymous SNV 0.907 3 23 hm5C_associated_SNPs_52570 0 0 1 0 0 Cytosol 0.500232194529531 0.500328176118433 0 0 hm5C_site_47922 DeepMRMD:0;iRNA_m5C:0 47923 chr3 8543528 8543528 1 + G T rs17049212 8543525 + 8543505 8543545 41 CTGCGCACAGAGCTCCCTCCCAGGCCCGCGAACTTGGCCAT CTGCGCACAGAGCTCCCTCCCAGTCCCGCGAACTTGGCCAT < 41bp 0.841340185541701 0.526162296674528 0.9192207 0.5214505 prediction 0.630355777734345 Functional Loss - LMCD1 ENSG00000227110 ncRNA_intronic Human antisense chr3:8543525 chr3:8543528 . . 0 24 hm5C_associated_SNPs_52571 0 0 0 0 0 exosome 0.500231643921033 0.500231643912963 0.7955404 1.61399782427907e-11 hm5C_site_47923 DeepMRMD:0.7955404;iRNA_m5C:1.61399782427907e-11 47924 chr15 91017821 91017821 1 + G T BLCA 91017818 + 91017798 91017838 41 AGCTTGACCTTATGAAGATGCGGGAAGAGGTTATCACCCTC AGCTTGACCTTATGAAGATGCGGTAAGAGGTTATCACCCTC < 41bp 0.815177451532513 0.464162358864001 0.887709 0.15833429 prediction 0.630354903065026 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:91017818 chr15:91017821 stopgain 0.955 1 24 hm5C_associated_SNPs_52572 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643923779 0.775418 0 hm5C_site_47924 DeepMRMD:0.775418;iRNA_m5C:0 47925 chr19 56693570 56693570 1 + G T BLCA 56693567 + 56693547 56693587 41 ACCTTCCCCAAATGGGTGACCAAGACGGAAAGAGGGAGACA ACCTTCCCCAAATGGGTGACCAATACGGAAAGAGGGAGACA < 41bp 0.815177046989557 0.442416010610977 0.16237295 0.0871025 prediction 0.630354093979113 Functional Loss - GALP ENSG00000197487 CDS Human protein_coding chr19:56693567 chr19:56693570 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_52573 0 0 0 0 2 exosome 0.500231644289114 0.500231643920889 0 7.36450012084333e-10 hm5C_site_47925 DeepMRMD:0;iRNA_m5C:7.36450012084333e-10 47926 chr4 186320906 186320906 1 + C A rs4317244 186320909 - 186320889 186320929 41 ACCAGCACTTCCTTTTCCCACTGGTATTTTCTACACTTCCG ACCAGCACTTCCTTTTCCCACTGTTATTTTCTACACTTCCG < 41bp 0.815167898399696 0.499956011439651 0.056678295 0.08220154 prediction 0.630335796799392 Functional Loss - ANKRD37 ENSG00000186352 CDS Human protein_coding chr4:186320909 chr4:186320906 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_52574 0 0 0 2 0 chromatin 0.500231464908668 0.500231640335682 0 0 hm5C_site_47926 DeepMRMD:0;iRNA_m5C:0 47927 chr12 113534630 113534630 1 + G T UCEC 113534627 + 113534607 113534647 41 GTGTGGAACGAGATCCACCACAAGACCGAGTTTGGATCCAA GTGTGGAACGAGATCCACCACAATACCGAGTTTGGATCCAA < 41bp 0.815159409252213 0.459269658504166 0.17850617 0.082719475 prediction 0.630318818504426 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113534627 chr12:113534630 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52575 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_47927 DeepMRMD:0;iRNA_m5C:0 47928 chr1 182758618 182758618 1 + G T rs142236506 182758615 + 182758595 182758635 41 AGGGGGAGGTTTGCACTCGGCGTGGCGCGGGTGAGCCGCGT AGGGGGAGGTTTGCACTCGGCGTTGCGCGGGTGAGCCGCGT < 41bp 0.8298523290572 0.514696569197477 0.86494136 0.8521265 prediction 0.630311519719445 Functional Loss - NPL ENSG00000135838 upstream Human protein_coding chr1:182758615 chr1:182758618 . . 0 24 hm5C_associated_SNPs_52576 0 0 0 0 0 Cytosol 0.500232185115488 0.500231646365409 0.02562972 1.07750015776453e-06 hm5C_site_47928 DeepMRMD:0.02562972;iRNA_m5C:1.07750015776453e-06 47929 chr4 158257656 158257656 1 + G T SARC 158257653 + 158257633 158257673 41 GAAGCCTCAGAAGTCCAAACCAGGAGTGTTTTCCTTTCTTG GAAGCCTCAGAAGTCCAAACCAGTAGTGTTTTCCTTTCTTG < 41bp 0.815150223627464 0.46758156421255 0.90419257 0.19040513 prediction 0.630300447254927 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158257653 chr4:158257656 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52577 0 0 0 0 0 exosome 0.500231643922214 0.500231643921219 0.80838514 1.99107397236276e-12 hm5C_site_47929 DeepMRMD:0.80838514;iRNA_m5C:1.99107397236276e-12 47930 chr10 123987437 123987437 1 + G T SKCM 123987434 + 123987414 123987454 41 CACGAGGACTGGCCCCTAACCAAGAGTCACACTTGCAGGTG CACGAGGACTGGCCCCTAACCAATAGTCACACTTGCAGGTG < 41bp 0.847304389475402 0.532155882259247 0.67759836 0.21297216 prediction 0.63029701443231 Functional Loss - TACC2 ENSG00000138162 CDS Human protein_coding chr10:123987434 chr10:123987437 stopgain 0.876 0 24 hm5C_associated_SNPs_52578 0 0 1 0 2 Cytoplasm 0.500231643921092 0.500231643921092 0.35519672 0 hm5C_site_47930 DeepMRMD:0.35519672;iRNA_m5C:0 47931 chr22 43559013 43559013 1 + G T UCEC 43559010 + 43558990 43559030 41 CAGAGTGAGTGCCCGGCCCACCAGGGACTGCAGCTGCACCA CAGAGTGAGTGCCCGGCCCACCATGGACTGCAGCTGCACCA < 41bp 0.867418516890965 0.552280374042451 0.90354383 0.26633888 prediction 0.630276285697027 Functional Loss - TSPO ENSG00000100300 CDS Human protein_coding chr22:43559010 chr22:43559013 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_52579 0 0 1 1 0 Ribosome 0.500231631247199 0.500231834902236 0.80708766 0 hm5C_site_47931 DeepMRMD:0.80708766;iRNA_m5C:0 47932 chr14 21469520 21469520 1 + G T LUSC 21469517 + 21469497 21469537 41 TATTAGCTCTCATGTCCCCCCTGGGCCTAGCCGTAGGGCTG TATTAGCTCTCATGTCCCCCCTGTGCCTAGCCGTAGGGCTG < 41bp 0.881924181562545 0.566793260591598 0.29408252 0.057070613 prediction 0.630261841941893 Functional Loss - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21469517 chr14:21469520 nonsynonymous SNV 0.033 4 24 hm5C_associated_SNPs_52580 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0 0 hm5C_site_47932 DeepMRMD:0;iRNA_m5C:0 47933 chr20 36028539 36028539 1 + G T SARC 36028537 + 36028517 36028557 41 GGGACCTGGAACGGTACCACCAGGGTGGCCATCAAAACCCT GGGACCTGGAACGGTACCACCATGGTGGCCATCAAAACCCT < 41bp 0.815130418383657 0.477533248774533 0.92691076 0.20941946 prediction 0.630260836767314 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36028537 chr20:36028539 nonsynonymous SNV 0.927 3 23 hm5C_associated_SNPs_52581 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643981813 0.85382152 0 hm5C_site_47933 DeepMRMD:0.85382152;iRNA_m5C:0 47934 chr7 151716788 151716788 1 + G T PAAD 151716785 + 151716765 151716805 41 ATGTCACCTACGGAAATATTCGCGAGCGTGTTGAGTTAAGG ATGTCACCTACGGAAATATTCGCTAGCGTGTTGAGTTAAGG < 41bp 0.859794115121124 0.544668008267722 0.3117503 0.12023708 prediction 0.630252213706804 Functional Loss - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151716785 chr7:151716788 stopgain 0.002 0 24 hm5C_associated_SNPs_52582 0 0 0 0 1 exosome 0.500249438273294 0.500212908794175 0 7.30589582382812e-05 hm5C_site_47934 DeepMRMD:0;iRNA_m5C:7.30589582382812e-05 47935 chr1 11867208 11867208 1 + G T UCEC 11867206 + 11867186 11867226 41 AGACCATCCTTGGAGAAACACAGGAGGAGGAGGATGAGATT AGACCATCCTTGGAGAAACACATGAGGAGGAGGATGAGATT < 41bp 0.825126171401018 0.510075763118844 0.8980706 0.24134567 prediction 0.630100816564348 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11867206 chr1:11867208 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_52583 0 0 1 0 2 Endoplasmic reticulum 0.500231647282915 0.50023164405851 0.7961412 6.44880993050378e-09 hm5C_site_47935 DeepMRMD:0.7961412;iRNA_m5C:6.44880993050378e-09 47936 chr15 84581906 84581906 1 + A C LUSC 84581902 + 84581882 84581922 41 GTGGGCCGGGTGTGCAGGTCCGTGAGGTGAAGTGCCGTGTG GTGGGCCGGGTGTGCAGGTCCGTGCGGTGAAGTGCCGTGTG < 41bp 0.815005335160116 0.451374517045753 0.7122874 0.71387243 prediction 0.630010670320233 Functional Loss - ADAMTSL3 ENSG00000156218 CDS Human protein_coding chr15:84581902 chr15:84581906 nonsynonymous SNV 0.970 0 25 hm5C_associated_SNPs_52584 0 0 0 0 1 cytosol 0.50023164797614 0.50023167161148 0 0 hm5C_site_47936 DeepMRMD:0;iRNA_m5C:0 47937 chr11 19735399 19735399 1 + C A UCEC 19735402 - 19735382 19735422 41 GCGATTTCAGGGGGATCTGGCTAGGATAGGTGGTCTTGCTC GCGATTTCAGGGGGATCTGGCTATGATAGGTGGTCTTGCTC < 41bp 0.814997586255033 0.451928058236141 0.88936925 0.4249217 prediction 0.629995172510067 Functional Loss - NAV2 ENSG00000166833 CDS Human protein_coding chr11:19735402 chr11:19735399 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_52585 0 0 0 0 0 Nucleus 0.500231643944518 0.500231643921092 0.7787385 4.68514116391816e-11 hm5C_site_47937 DeepMRMD:0.7787385;iRNA_m5C:4.68514116391816e-11 47938 chr16 87425857 87425857 1 + G T rs577294834 87425854 + 87425834 87425874 41 CGTCATGGCGGCGGCCCCGGCCGGCTCTGGCCCCGCCCCTC CGTCATGGCGGCGGCCCCGGCCGTCTCTGGCCCCGCCCCTC < 41bp 0.865421309198645 0.550424011454715 0.79091066 0.34204823 prediction 0.629994595487861 Functional Loss - MAP1LC3B ENSG00000140941 UTR5 Human protein_coding chr16:87425854 chr16:87425857 . . 0 24 hm5C_associated_SNPs_52586 0 0 0 0 0 Ribosome 0.500231643930827 0.500231645238855 0.58182132 0 hm5C_site_47938 DeepMRMD:0.58182132;iRNA_m5C:0 47939 chr21 37442687 37442687 1 + G T LUAD 37442685 + 37442665 37442705 41 GGACGTGCTGGTCAACAACGCGGGCATCGCCTTCAAGGGTA GGACGTGCTGGTCAACAACGCGTGCATCGCCTTCAAGGGTA < 41bp 0.816668845906377 0.50168786682741 0.8827012 0.36759192 prediction 0.629961958157934 Functional Loss - CBR1 ENSG00000159228 CDS Human protein_coding chr21:37442685 chr21:37442687 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52587 0 0 1 0 0 Ribosome 0.500231643921094 0.500231643920538 0.7654024 1.11155529225471e-12 hm5C_site_47939 DeepMRMD:0.7654024;iRNA_m5C:1.11155529225471e-12 47940 chr12 13154678 13154678 1 + G T STAD 13154675 + 13154655 13154695 41 GGAGCAAATCAAGAAAGGGCCGAGAAAGTTGTGATCGGCTC GGAGCAAATCAAGAAAGGGCCGATAAAGTTGTGATCGGCTC < 41bp 0.835108814759211 0.520133507897449 0.15307975 0.08236426 prediction 0.629950613723526 Functional Loss - HTR7P1 ENSG00000183935 ncRNA_exonic Human transcribed_processed_pseudogene chr12:13154675 chr12:13154678 . . 0 24 hm5C_associated_SNPs_52588 0 0 0 0 0 unknown 0.500231643921085 0.500231643921097 0 0 hm5C_site_47940 DeepMRMD:0;iRNA_m5C:0 47941 chr1 231337175 231337175 1 + A C UCEC 231337171 + 231337151 231337191 41 GGTCAAAGGCGCCCTGGAGCCGAAAGTGTCTGCGGAGTTTG GGTCAAAGGCGCCCTGGAGCCGAACGTGTCTGCGGAGTTTG < 41bp 0.814973484880303 0.42558862325068 0.50375587 0.3900033 prediction 0.629946969760607 Functional Loss - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231337171 chr1:231337175 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_52589 0 0 0 0 2 exosome 0.500231643895791 0.500231643877286 0.00751173999999999 3.70106167935091e-11 hm5C_site_47941 DeepMRMD:0.00751173999999999;iRNA_m5C:3.70106167935091e-11 47942 chr12 20806958 20806958 1 + G T BRCA 20806956 + 20806936 20806976 41 CTCCTCAGCTGGCCAACCTTCAGGAATCCTTCATCTCTCAC CTCCTCAGCTGGCCAACCTTCATGAATCCTTCATCTCTCAC < 41bp 0.815766242395586 0.500797913915736 0.23265111 0.090426445 prediction 0.629936656959701 Functional Loss - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20806956 chr12:20806958 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_52590 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921093 0 0 hm5C_site_47942 DeepMRMD:0;iRNA_m5C:0 47943 chr19 56113605 56113605 1 + A C COAD 56113601 + 56113581 56113621 41 CGTCCTGGGGGAGCCACCTCCTCAAATCGGACACTCAAGGC CGTCCTGGGGGAGCCACCTCCTCACATCGGACACTCAAGGC < 41bp 0.882592833250787 0.567631403140947 0.92108095 0.46539775 prediction 0.629922860219679 Functional Loss - ZNF524 ENSG00000171443 CDS Human protein_coding chr19:56113601 chr19:56113605 nonsynonymous SNV 0.960 0 25 hm5C_associated_SNPs_52591 0 0 0 0 0 chromatin 0.500231643939419 0.500239029422549 0.8421619 0 hm5C_site_47943 DeepMRMD:0.8421619;iRNA_m5C:0 47944 chr20 44639909 44639909 1 + G T LUAD 44639906 + 44639886 44639926 41 GGCTTGCCCTGGTGCAGTACCACGGCCAACTACGACACCGA GGCTTGCCCTGGTGCAGTACCACTGCCAACTACGACACCGA < 41bp 0.814943022882728 0.436321032203446 0.86843497 0.25210953 prediction 0.629886045765456 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639906 chr20:44639909 synonymous SNV . 0 24 hm5C_associated_SNPs_52592 0 0 0 0 0 Endoplasmic reticulum 0.500231643917481 0.500231140164226 0.73686994 1.00750650999792e-06 hm5C_site_47944 DeepMRMD:0.73686994;iRNA_m5C:1.00750650999792e-06 47945 chr5 140431212 140431212 1 + G T UCEC 140431209 + 140431189 140431229 41 TGGCCAACGTAGCTAAGGACCTAGGACTGGAGGTAGGGAAG TGGCCAACGTAGCTAAGGACCTATGACTGGAGGTAGGGAAG < 41bp 0.873996476801675 0.559053911440315 0.15655905 0.08666867 prediction 0.629885130722719 Functional Loss - PCDHB1 ENSG00000171815 CDS Human protein_coding chr5:140431209 chr5:140431212 stopgain 0.984 1 24 hm5C_associated_SNPs_52593 0 0 0 0 0 unknown 0.500231643921092 0.500231641827866 0 4.18645362820769e-09 hm5C_site_47945 DeepMRMD:0;iRNA_m5C:4.18645362820769e-09 47946 chr1 160100252 160100252 1 + G T LUAD 160100250 + 160100230 160100270 41 TGCCATCTGGAAAGTTTCCTCGGGGCTTCAAATTCGACACG TGCCATCTGGAAAGTTTCCTCGTGGCTTCAAATTCGACACG < 41bp 0.834779098562335 0.519839609660768 0.91276884 0.26899964 prediction 0.629878977803134 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160100250 chr1:160100252 synonymous SNV . 0 23 hm5C_associated_SNPs_52594 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.82553768 2.22044604925031e-16 hm5C_site_47946 DeepMRMD:0.82553768;iRNA_m5C:2.22044604925031e-16 47947 chr2 10559959 10559959 1 + G T LUSC 10559956 + 10559936 10559976 41 AGAACACGGAGTTCACCGACCACGAGCTGCAGGAGTGGTAC AGAACACGGAGTTCACCGACCACTAGCTGCAGGAGTGGTAC < 41bp 0.814933952101941 0.457629942956453 0.6464266 0.27203178 prediction 0.629867904203883 Functional Loss - HPCAL1 ENSG00000115756 CDS Human protein_coding chr2:10559956 chr2:10559959 stopgain 1.000 1 24 hm5C_associated_SNPs_52595 0 0 0 0 1 Ribosome 0.500227703014519 0.500366227247344 0.2928532 0 hm5C_site_47947 DeepMRMD:0.2928532;iRNA_m5C:0 47948 chr19 42399497 42399497 1 + G T STAD 42399494 + 42399474 42399514 41 GGACCGGAATATCGGGGCTCCTGGGCAGGACACCCCTGGAG GGACCGGAATATCGGGGCTCCTGTGCAGGACACCCCTGGAG < 41bp 0.814931688618348 0.454066698776774 0.9265423 0.32070464 prediction 0.629863377236696 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42399494 chr19:42399497 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_52596 0 0 1 0 1 Cytosol 0.500231643921069 0.500231643883246 0.8530846 7.56459339612547e-11 hm5C_site_47948 DeepMRMD:0.8530846;iRNA_m5C:7.56459339612547e-11 47949 chr6 117037417 117037417 1 + G T UCEC 117037414 + 117037394 117037434 41 TTCAAACAGACTCACAACAACAAGAAATGCCGTGTGGGCCC TTCAAACAGACTCACAACAACAATAAATGCCGTGTGGGCCC < 41bp 0.814919122128905 0.458648346161546 0.22190061 0.15521058 prediction 0.629838244257809 Functional Loss - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117037414 chr6:117037417 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52597 0 0 1 0 2 chromatin 0.500231643918856 0.500231643977192 0 0 hm5C_site_47949 DeepMRMD:0;iRNA_m5C:0 47950 chr22 39477577 39477577 1 + G T LUAD 39477574 + 39477554 39477594 41 ATATATTACTGCACATCATGCTGGGGGAGATTCTCAGGTGA ATATATTACTGCACATCATGCTGTGGGAGATTCTCAGGTGA < 41bp 0.814911698225818 0.443264804447572 0.4107355 0.10369912 prediction 0.629823396451637 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39477574 chr22:39477577 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_52598 0 0 0 0 1 Cytosol 0.50023164389643 0.500233376751548 0 0 hm5C_site_47950 DeepMRMD:0;iRNA_m5C:0 47951 chr12 117461965 117461965 1 + G T ESCA 117461962 + 117461942 117461982 41 GCCTGTCCAGGGTGAGGATCCACGACCTCCGCAGTGGTAAC GCCTGTCCAGGGTGAGGATCCACTACCTCCGCAGTGGTAAC < 41bp 0.873035436143087 0.558131350855272 0.62358 0.36487377 prediction 0.62980817057563 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117461962 chr12:117461965 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_52599 0 0 1 0 0 Cytosol 0.500231474666021 0.500231643929837 0.24716 0 hm5C_site_47951 DeepMRMD:0.24716;iRNA_m5C:0 47952 chr2 105859197 105859197 1 + G T SARC 105859195 + 105859175 105859215 41 GCCTCCTGTCTGTGTTTAGCCAGCGCTTTTACTGCGGTTCC GCCTCCTGTCTGTGTTTAGCCATCGCTTTTACTGCGGTTCC < 41bp 0.820526046873947 0.505622687516204 0.8392207 0.24715692 prediction 0.629806718715487 Functional Loss - GPR45 ENSG00000135973 CDS Human protein_coding chr2:105859195 chr2:105859197 nonsynonymous SNV 0.955 1 23 hm5C_associated_SNPs_52600 0 0 0 0 0 unknown 0.500231643920331 0.500231643918682 0.6784414 3.29758442774164e-12 hm5C_site_47952 DeepMRMD:0.6784414;iRNA_m5C:3.29758442774164e-12 47953 chr10 85972083 85972083 1 + G T UCS 85972080 + 85972060 85972100 41 CTGAGGTGTTTATCACACTGCTGGATGTCAATGACCACCCC CTGAGGTGTTTATCACACTGCTGTATGTCAATGACCACCCC < 41bp 0.814898020318381 0.446347069599986 0.26046968 0.103836805 prediction 0.629796040636762 Functional Loss - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85972080 chr10:85972083 nonsynonymous SNV 0.373 4 24 hm5C_associated_SNPs_52601 0 0 0 0 1 cytosol 0.500231568218261 0.500231644388308 0 0 hm5C_site_47953 DeepMRMD:0;iRNA_m5C:0 47954 chr1 15987584 15987584 1 + G T UCEC 15987581 + 15987561 15987601 41 ACCCAAAATGAGCATCTTACCCAGAATGAACAGTGTCCACA ACCCAAAATGAGCATCTTACCCATAATGAACAGTGTCCACA < 41bp 0.8148962664792 0.481526202230891 0.1964117 0.05994913 prediction 0.6297925329584 Functional Loss - RSC1A1 ENSG00000215695 CDS Human protein_coding chr1:15987581 chr1:15987584 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_52602 0 0 1 0 0 exosome 0.500231643921285 0.500231643867749 0 1.07073017119319e-10 hm5C_site_47954 DeepMRMD:0;iRNA_m5C:1.07073017119319e-10 47955 chr17 7324723 7324723 1 + G T LUAD 7324721 + 7324701 7324741 41 AGCCTGTCCCAGCTCCCACCCTGGGCCCAGCAGTCATCCCT AGCCTGTCCCAGCTCCCACCCTTGGCCCAGCAGTCATCCCT < 41bp 0.831031110105101 0.516143566021279 0.39137375 0.036878347 prediction 0.629775088167645 Functional Loss - SPEM1 ENSG00000181323 CDS Human protein_coding chr17:7324721 chr17:7324723 synonymous SNV . 0 23 hm5C_associated_SNPs_52603 0 0 0 0 0 exosome 0.50023164392102 0.500231643921432 0 0 hm5C_site_47955 DeepMRMD:0;iRNA_m5C:0 47956 chr1 180775252 180775252 1 + G T LUAD 180775249 + 180775229 180775269 41 TGAAAAAGCATGACAAGATCCTGGAAACATCTCGTGGAGCA TGAAAAAGCATGACAAGATCCTGTAAACATCTCGTGGAGCA < 41bp 0.814884357795717 0.476603706145364 0.37497357 0.077346355 prediction 0.629768715591434 Functional Loss - XPR1 ENSG00000143324 CDS Human protein_coding chr1:180775249 chr1:180775252 stopgain 1.000 1 24 hm5C_associated_SNPs_52604 0 0 1 0 2 Ribosome 0.500231659009889 0.500231688588946 0 0 hm5C_site_47956 DeepMRMD:0;iRNA_m5C:0 47957 chr1 248551326 248551326 1 + G T LUSC 248551324 + 248551304 248551344 41 ATCCTGTCCTCATCAGCTGGCGGGTCTGCTGGATGATCCTG ATCCTGTCCTCATCAGCTGGCGTGTCTGCTGGATGATCCTG < 41bp 0.814861097027154 0.488564648869724 0.41889045 0.103679 prediction 0.629722194054309 Functional Loss - OR2T6 ENSG00000198104 CDS Human protein_coding chr1:248551324 chr1:248551326 synonymous SNV . 0 23 hm5C_associated_SNPs_52605 0 0 0 0 0 unknown 0.500231643921094 0.500231643919844 0 2.50000020685093e-12 hm5C_site_47957 DeepMRMD:0;iRNA_m5C:2.50000020685093e-12 47958 chr10 5415744 5415744 1 + G T UCEC 5415742 + 5415722 5415762 41 GCTCCTGGGGGGCCCCAGGACAGGCCTCCCCCACAAGTTCT GCTCCTGGGGGGCCCCAGGACATGCCTCCCCCACAAGTTCT < 41bp 0.814852404642455 0.486595018472031 0.48360252 0.33585763 prediction 0.629704809284911 Functional Loss - UCN3 ENSG00000178473 CDS Human protein_coding chr10:5415742 chr10:5415744 nonsynonymous SNV 0.096 2 23 hm5C_associated_SNPs_52606 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_47958 DeepMRMD:0;iRNA_m5C:0 47959 chr21 18816502 18816502 1 + G T rs182117802 18816499 + 18816479 18816519 41 AATCCTCCTGCCTCAGCCTTCTGGGTAGTTGAGACTACAGG AATCCTCCTGCCTCAGCCTTCTGTGTAGTTGAGACTACAGG < 41bp 0.814848904794625 0.466467456937136 0.2172972 0.11107364 prediction 0.629697809589249 Functional Loss - LINC01549 ENSG00000232560 CDS Human lincRNA chr21:18816499 chr21:18816502 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_52607 0 0 0 0 1 unknown 0.500231643920374 0.50023164392109 0 0 hm5C_site_47959 DeepMRMD:0;iRNA_m5C:0 47960 chr2 190535346 190535346 1 + G T UCEC 190535343 + 190535323 190535363 41 ACGGGCCATGCAGTTTGGATCAAGAATTGCAAAAATGGAAA ACGGGCCATGCAGTTTGGATCAATAATTGCAAAAATGGAAA < 41bp 0.847623508021365 0.532789239040102 0.3002395 0.08869249 prediction 0.629668537962526 Functional Loss - ASNSD1 ENSG00000138381 CDS Human protein_coding chr2:190535343 chr2:190535346 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52608 0 0 1 0 0 chromatin 0.500247444496536 0.500231664625854 0 3.15597413642621e-05 hm5C_site_47960 DeepMRMD:0;iRNA_m5C:3.15597413642621e-05 47961 chr22 50635953 50635953 1 + G T SARC 50635951 + 50635931 50635971 41 CACCTTCAAGAGGGCCATCGCAGCGCTCTCCTTCTGGCAGA CACCTTCAAGAGGGCCATCGCATCGCTCTCCTTCTGGCAGA < 41bp 0.814831358381137 0.493374487976674 0.91577494 0.41610956 prediction 0.629662716762274 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50635951 chr22:50635953 nonsynonymous SNV 0.083 1 23 hm5C_associated_SNPs_52609 0 0 1 0 2 Ribosome 0.500231643921083 0.500231644524929 0.83154988 0 hm5C_site_47961 DeepMRMD:0.83154988;iRNA_m5C:0 47962 chr14 86089640 86089640 1 + G T COAD 86089637 + 86089617 86089657 41 GATTATTGCGAGGCAGGCACCAAGAAGGACAACTCCATCCT GATTATTGCGAGGCAGGCACCAATAAGGACAACTCCATCCT < 41bp 0.814811700931573 0.460918526707677 0.36190653 0.08669835 prediction 0.629623401863145 Functional Loss - FLRT2 ENSG00000185070 CDS Human protein_coding chr14:86089637 chr14:86089640 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52610 0 0 0 0 0 Ribosome 0.500231643920228 0.500231645296095 0 0 hm5C_site_47962 DeepMRMD:0;iRNA_m5C:0 47963 chr2 64683599 64683599 1 + G T STAD 64683596 + 64683576 64683616 41 TTCATTCCAGACCAGCCATTCAGGGTGAGTACCTCGAGTGC TTCATTCCAGACCAGCCATTCAGTGTGAGTACCTCGAGTGC < 41bp 0.866270718828058 0.551459095209505 0.93767416 0.38154963 prediction 0.629623247237106 Functional Loss - LGALSL ENSG00000119862 CDS Human protein_coding chr2:64683596 chr2:64683599 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52611 0 0 1 0 1 Endoplasmic reticulum 0.50023164392075 0.500231730563559 0.87534832 0 hm5C_site_47963 DeepMRMD:0.87534832;iRNA_m5C:0 47964 chr1 156628475 156628475 1 + G T UCEC 156628472 + 156628452 156628492 41 ATCTGCCGCTGATCCGATGCCAAGAGAACGGTCGTTGGGAG ATCTGCCGCTGATCCGATGCCAATAGAACGGTCGTTGGGAG < 41bp 0.874962458826874 0.560151289134362 0.74253696 0.2115494 prediction 0.629622339385024 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156628472 chr1:156628475 stopgain 0.513 0 24 hm5C_associated_SNPs_52612 0 0 0 0 1 chromatin 0.500231603233992 0.500231643921103 0.48507392 0 hm5C_site_47964 DeepMRMD:0.48507392;iRNA_m5C:0 47965 chr7 107314747 107314747 1 + G T BLCA 107314744 + 107314724 107314764 41 CACTGCAGCTAGAGATACAGCTAGAGTCCTGATTGCCAGTG CACTGCAGCTAGAGATACAGCTATAGTCCTGATTGCCAGTG < 41bp 0.861968967045895 0.547161822449934 0.1466474 0.17060527 prediction 0.629614289191921 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107314744 chr7:107314747 nonsynonymous SNV 0.081 5 24 hm5C_associated_SNPs_52613 0 0 0 0 1 Nucleus 0.500231643900707 0.500221422828147 0 2.0442145119981e-05 hm5C_site_47965 DeepMRMD:0;iRNA_m5C:2.0442145119981e-05 47966 chr8 120257134 120257134 1 + G T rs114074309 120257131 + 120257111 120257151 41 TGAGGCCACAGTTCCCACCACACGAGGGCTTTTGTATTGTT TGAGGCCACAGTTCCCACCACACTAGGGCTTTTGTATTGTT < 41bp 0.818740391344311 0.503947524658195 0.15979484 0.11797899 prediction 0.629585733372231 Functional Loss - MAL2 ENSG00000253972 ncRNA_exonic Human lincRNA chr8:120257131 chr8:120257134 . . 0 24 hm5C_associated_SNPs_52614 0 0 1 0 0 Cytosol 0.500231665682959 0.500231644401349 0 4.25632207257109e-08 hm5C_site_47966 DeepMRMD:0;iRNA_m5C:4.25632207257109e-08 47967 chr18 13731756 13731756 1 + G T BLCA 13731753 + 13731733 13731773 41 TGTGGGAAAGACACTCCATCCAAGAAGAGAAAACTTGATCC TGTGGGAAAGACACTCCATCCAATAAGAGAAAACTTGATCC < 41bp 0.814789857113976 0.469527752076496 0.15325585 0.0169895 prediction 0.629579714227951 Functional Loss - RNMT ENSG00000101654 CDS Human protein_coding chr18:13731753 chr18:13731756 nonsynonymous SNV 0.988 1 24 hm5C_associated_SNPs_52615 0 0 1 0 0 Nucleus 0.500231702355719 0.500231643924497 0 1.16862444166088e-07 hm5C_site_47967 DeepMRMD:0;iRNA_m5C:1.16862444166088e-07 47968 chr16 67685845 67685845 1 + G T THCA 67685842 + 67685822 67685862 41 AGGGACATGCGGCTATCAATCACGGGGACCTTGGCAGAGAG AGGGACATGCGGCTATCAATCACTGGGACCTTGGCAGAGAG < 41bp 0.878983870760772 0.564198921850051 0.93297696 0.41245478 prediction 0.629569897821442 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67685842 chr16:67685845 synonymous SNV . 0 24 hm5C_associated_SNPs_52616 0 0 0 0 2 chromatin 0.500231641157966 0.50023164163663 0.86595392 0 hm5C_site_47968 DeepMRMD:0.86595392;iRNA_m5C:0 47969 chr15 101592076 101592076 1 + G T GBM 101592074 + 101592054 101592094 41 GTGTCCTGACGGCCATCGAGCGGGACTTCATCTCCTGCCCC GTGTCCTGACGGCCATCGAGCGTGACTTCATCTCCTGCCCC < 41bp 0.814777453502736 0.49770199464856 0.9056934 0.3421569 prediction 0.629554907005472 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101592074 chr15:101592076 synonymous SNV . 0 23 hm5C_associated_SNPs_52617 0 0 0 0 1 Nucleus 0.500231643921092 0.500231647897208 0.8113868 0 hm5C_site_47969 DeepMRMD:0.8113868;iRNA_m5C:0 47970 chr9 116359106 116359106 1 + G T BLCA 116359103 + 116359083 116359123 41 GGACAACCTGCAGAGCGTCACGCGGGGCTGCTTCGACCTGG GGACAACCTGCAGAGCGTCACGCTGGGCTGCTTCGACCTGG < 41bp 0.821409509549534 0.506633559961221 0.93134147 0.37313223 prediction 0.629551899176625 Functional Loss - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116359103 chr9:116359106 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_52618 0 0 0 0 1 Nucleus 0.500231643921087 0.500231640767628 0.86268294 6.30691765479696e-09 hm5C_site_47970 DeepMRMD:0.86268294;iRNA_m5C:6.30691765479696e-09 47971 chr2 98354521 98354521 1 + G T UCEC 98354518 + 98354498 98354538 41 GCAAGCGGATGGAGTGCCCACCAGAGTGTCCACCCGAACTG GCAAGCGGATGGAGTGCCCACCATAGTGTCCACCCGAACTG < 41bp 0.81476758501011 0.444976626646143 0.53231955 0.21470779 prediction 0.629535170020221 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98354518 chr2:98354521 stopgain 0.476 1 24 hm5C_associated_SNPs_52619 0 0 0 0 2 exosome 0.500232589682346 0.500231643921202 0.0646390999999999 1.89152228835532e-06 hm5C_site_47971 DeepMRMD:0.0646390999999999;iRNA_m5C:1.89152228835532e-06 47972 chr11 125781322 125781322 1 + G T THCA 125781319 + 125781299 125781339 41 CTAAGATTCGTGTGTTTGTCCTGGATGAAGCAGATGTGATG CTAAGATTCGTGTGTTTGTCCTGTATGAAGCAGATGTGATG < 41bp 0.81476209383267 0.463154952630573 0.17633525 0.13849542 prediction 0.629524187665339 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125781319 chr11:125781322 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52620 0 0 1 0 1 exosome 0.50023164251131 0.500235492556215 0 0 hm5C_site_47972 DeepMRMD:0;iRNA_m5C:0 47973 chr11 123900648 123900648 1 + G T UCEC 123900645 + 123900625 123900665 41 AGCTCTATTTCTTTCACTTCCTAGGGGGCACCGAGTGTTTC AGCTCTATTTCTTTCACTTCCTATGGGGCACCGAGTGTTTC < 41bp 0.814750664897745 0.451027903555192 0.16827795 0.16134006 prediction 0.62950132979549 Functional Loss - OR10G8 ENSG00000234560 CDS Human protein_coding chr11:123900645 chr11:123900648 nonsynonymous SNV 0.320 4 24 hm5C_associated_SNPs_52621 0 0 0 0 0 unknown 0.500231654633238 0.500237163427867 0 0 hm5C_site_47973 DeepMRMD:0;iRNA_m5C:0 47974 chr3 186917353 186917353 1 + G T THCA 186917351 + 186917331 186917371 41 CTCCGCAGGTTCCACTGCTCCTGGTGCTGGCACACCTGGCA CTCCGCAGGTTCCACTGCTCCTTGTGCTGGCACACCTGGCA < 41bp 0.821433729540318 0.506683623103618 0.383933 0.20419514 prediction 0.6295002128734 Functional Loss - RTP1 ENSG00000175077 CDS Human protein_coding chr3:186917351 chr3:186917353 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_52622 0 0 0 0 1 exosome 0.500208216800849 0.50021575101242 0 0 hm5C_site_47974 DeepMRMD:0;iRNA_m5C:0 47975 chr16 20471598 20471598 1 + G T LUAD 20471595 + 20471575 20471615 41 GCTAGTGATGTGTTGGATCACTGGGCTGACATGGAGAAGGT GCTAGTGATGTGTTGGATCACTGTGCTGACATGGAGAAGGT < 41bp 0.814737893764993 0.45964584039218 0.8821856 0.20788318 prediction 0.629475787529985 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20471595 chr16:20471598 nonsynonymous SNV 0.891 4 24 hm5C_associated_SNPs_52623 0 0 0 1 1 exosome 0.500231643922449 0.500221794958405 0.7643712 1.96979280866483e-05 hm5C_site_47975 DeepMRMD:0.7643712;iRNA_m5C:1.96979280866483e-05 47976 chr22 45182426 45182426 1 + G T SARC 45182424 + 45182404 45182444 41 GCCCATGGCTGGCCAGGATCCTGCGCTGAGCACGAGTCACC GCCCATGGCTGGCCAGGATCCTTCGCTGAGCACGAGTCACC < 41bp 0.814732676145438 0.48086493711461 0.42640164 0.25827074 prediction 0.629465352290875 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45182424 chr22:45182426 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52624 0 0 0 0 1 unknown 0.500231643921203 0.500231643921092 0 2.20490292690556e-13 hm5C_site_47976 DeepMRMD:0;iRNA_m5C:2.20490292690556e-13 47977 chr15 27188372 27188372 1 + G T LUSC 27188369 + 27188349 27188389 41 CTGACCCCCGCAGGGGTCACCACGGTGCTGACCATGACGAC CTGACCCCCGCAGGGGTCACCACTGTGCTGACCATGACGAC < 41bp 0.814729625517089 0.436564667343441 0.92186797 0.30337626 prediction 0.629459251034179 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27188369 chr15:27188372 synonymous SNV . 0 24 hm5C_associated_SNPs_52625 0 0 0 0 1 unknown 0.500231636007412 0.500231603354132 0.84373594 6.53065612699066e-08 hm5C_site_47977 DeepMRMD:0.84373594;iRNA_m5C:6.53065612699066e-08 47978 chrX 148798334 148798334 1 + G T LGG 148798331 + 148798311 148798351 41 AGGGCCCACGCTGAGACCAGCAAGATGAAAGTTCTTGAGTA AGGGCCCACGCTGAGACCAGCAATATGAAAGTTCTTGAGTA < 41bp 0.814714314318631 0.443688328105024 0.9035256 0.22931674 prediction 0.629428628637262 Functional Loss - MAGEA11 ENSG00000185247 CDS Human protein_coding chrX:148798331 chrX:148798334 nonsynonymous SNV 0.641 1 24 hm5C_associated_SNPs_52626 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0.8070512 8.88178419700125e-16 hm5C_site_47978 DeepMRMD:0.8070512;iRNA_m5C:8.88178419700125e-16 47979 chr6 159653390 159653390 1 + G T LUSC 159653388 + 159653368 159653408 41 CCGCCCAGGGGCGCCCCCCTCGGCTTCGGCCTCTCCTGCCC CCGCCCAGGGGCGCCCCCCTCGTCTTCGGCCTCTCCTGCCC < 41bp 0.814695734658202 0.482299951324185 0.919315 0.5052684 prediction 0.629391469316404 Functional Loss - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159653388 chr6:159653390 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_52627 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.8280932 0 hm5C_site_47979 DeepMRMD:0.8280932;iRNA_m5C:0 47980 chr7 2740310 2740310 1 + G T UCEC 2740307 + 2740287 2740327 41 CTGAGCCGACCCGAGGCTCCCGAGGACTTCCAGACCTTCCA CTGAGCCGACCCGAGGCTCCCGATGACTTCCAGACCTTCCA < 41bp 0.814690948110038 0.436798311765188 0.91640294 0.6297891 prediction 0.629381896220077 Functional Loss - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2740307 chr7:2740310 nonsynonymous SNV 0.865 3 24 hm5C_associated_SNPs_52628 0 0 0 0 1 nucleus 0.500231643921092 0.500231643921092 0.57322768 0 hm5C_site_47980 DeepMRMD:0.57322768;iRNA_m5C:0 47981 chr1 151499552 151499552 1 + G T LIHC 151499549 + 151499529 151499569 41 AGAGCAGGCCCGAGCTAGTGCTGGAGATACTCGCCAGGTTG AGAGCAGGCCCGAGCTAGTGCTGTAGATACTCGCCAGGTTG < 41bp 0.881797701409039 0.567117844657159 0.53727275 0.26381618 prediction 0.62935971350376 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151499549 chr1:151499552 nonsynonymous SNV 0.942 0 24 hm5C_associated_SNPs_52629 0 0 0 0 1 exosome 0.500231643921092 0.500231643917188 0.0745454999999999 7.80864262139858e-12 hm5C_site_47981 DeepMRMD:0.0745454999999999;iRNA_m5C:7.80864262139858e-12 47982 chr16 68844204 68844204 1 + G T LGG 68844202 + 68844182 68844222 41 ACAACAAGCCCGAATTCACCCAGGAGGTCTTTAAGGGGTCT ACAACAAGCCCGAATTCACCCATGAGGTCTTTAAGGGGTCT < 41bp 0.82954300148774 0.514876502539319 0.78765047 0.15126577 prediction 0.629332997896842 Functional Loss - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68844202 chr16:68844204 nonsynonymous SNV 0.275 1 23 hm5C_associated_SNPs_52630 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0.57530094 0 hm5C_site_47982 DeepMRMD:0.57530094;iRNA_m5C:0 47983 chr4 17524636 17524636 1 + G T COAD 17524634 + 17524614 17524654 41 GTACCGGGCAGTCAGCGGTCCTGGGGGCATCTGCCTATGGA GTACCGGGCAGTCAGCGGTCCTTGGGGCATCTGCCTATGGA < 41bp 0.814650257474275 0.491672254063482 0.89149815 0.24566439 prediction 0.62930051494855 Functional Loss - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524634 chr4:17524636 nonsynonymous SNV 0.477 1 23 hm5C_associated_SNPs_52631 0 0 0 0 1 unknown 0.500231606914767 0.500220374080393 0.7829963 2.24656687488611e-05 hm5C_site_47983 DeepMRMD:0.7829963;iRNA_m5C:2.24656687488611e-05 47984 chr17 43227434 43227434 1 + G T HNSC 43227431 + 43227411 43227451 41 AGGAGCTCATCAAGGAGTACCTGGAACTGGAGAAGTGCCTC AGGAGCTCATCAAGGAGTACCTGTAACTGGAGAAGTGCCTC < 41bp 0.859123736352441 0.544474626214684 0.7342963 0.3341775 prediction 0.629298220275515 Functional Loss - HEXIM1 ENSG00000186834 CDS Human protein_coding chr17:43227431 chr17:43227434 stopgain 1.000 1 24 hm5C_associated_SNPs_52632 0 0 1 0 0 Ribosome 0.500231470739692 0.500231688268732 0.4685926 0 hm5C_site_47984 DeepMRMD:0.4685926;iRNA_m5C:0 47985 chr19 15640547 15640547 1 + G T GBM 15640544 + 15640524 15640564 41 TTCCAAATGAGGCGGGCCTTCAAGATGAGAAGAAGGTACTG TTCCAAATGAGGCGGGCCTTCAATATGAGAAGAAGGTACTG < 41bp 0.873205262324027 0.558577843061027 0.83193904 0.32280487 prediction 0.629254838526001 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15640544 chr19:15640547 nonsynonymous SNV 0.823 1 24 hm5C_associated_SNPs_52633 0 0 0 0 1 exosome 0.500231643921092 0.500231643847276 0.66387808 1.4763323896716e-10 hm5C_site_47985 DeepMRMD:0.66387808;iRNA_m5C:1.4763323896716e-10 47986 chrX 35938165 35938165 1 + G T SKCM 35938163 + 35938143 35938183 41 TTAAGGAGCCCGTCAAGCCACAGGTGACACACTAAGGGGTG TTAAGGAGCCCGTCAAGCCACATGTGACACACTAAGGGGTG < 41bp 0.814606373132665 0.492216169397711 0.68077844 0.25762722 prediction 0.62921274626533 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35938163 chrX:35938165 nonsynonymous SNV 0.510 2 23 hm5C_associated_SNPs_52634 0 0 0 1 1 cytosol 0.500231643923276 0.500231643921092 0.36155688 4.36739533427044e-12 hm5C_site_47986 DeepMRMD:0.36155688;iRNA_m5C:4.36739533427044e-12 47987 chr2 37035875 37035875 1 + G T LUAD 37035872 + 37035852 37035892 41 TCCGACACGGACACGCGCATCGGGGCCGTGCAGTACACCTA TCCGACACGGACACGCGCATCGGTGCCGTGCAGTACACCTA < 41bp 0.881736062709874 0.567132673835283 0.9013908 0.22149041 prediction 0.629206777749182 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:37035872 chr2:37035875 synonymous SNV . 0 24 hm5C_associated_SNPs_52635 0 0 0 0 0 Nucleus 0.500231614665517 0.500231710593447 0.8027816 0 hm5C_site_47987 DeepMRMD:0.8027816;iRNA_m5C:0 47988 chr19 15219999 15219999 1 + A C CESC 15219995 + 15219975 15220015 41 GCCCTGCACGGGGAGCCTACCTGCAAAGCCTGGAGCCCAGT GCCCTGCACGGGGAGCCTACCTGCCAAGCCTGGAGCCCAGT < 41bp 0.81458595722418 0.44405705369313 0.22126868 0.02860865 prediction 0.62917191444836 Functional Loss - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15219995 chr19:15219999 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_52636 0 0 0 0 0 exosome 0.500231642441699 0.500231643921092 0 0 hm5C_site_47988 DeepMRMD:0;iRNA_m5C:0 47989 chr20 23017092 23017092 1 + G T BRCA 23017090 + 23017070 23017110 41 ACTTCCGCCGATTCTTCCAGCGGGTTCTCTGCCTGCGCTGC ACTTCCGCCGATTCTTCCAGCGTGTTCTCTGCCTGCGCTGC < 41bp 0.816949598071835 0.50236594857978 0.89606225 0.16572803 prediction 0.629167298984109 Functional Loss - SSTR4 ENSG00000132671 CDS Human protein_coding chr20:23017090 chr20:23017092 synonymous SNV . 0 23 hm5C_associated_SNPs_52637 0 0 0 0 0 exosome 0.500231643921052 0.500231644497191 0.7921245 0 hm5C_site_47989 DeepMRMD:0.7921245;iRNA_m5C:0 47990 chr3 147127998 147127998 1 + G T SKCM 147127995 + 147127975 147128015 41 GGCGACGTGGCCGAACGAGACGTGGGCCTGGGCATCAACCC GGCGACGTGGCCGAACGAGACGTTGGCCTGGGCATCAACCC < 41bp 0.868247604842994 0.553669923905726 0.33370286 0.26998478 prediction 0.629155361874537 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147127995 chr3:147127998 synonymous SNV . 0 24 hm5C_associated_SNPs_52638 0 0 0 0 0 exosome 0.500231672835735 0.500231643967746 0 5.77359768882957e-08 hm5C_site_47990 DeepMRMD:0;iRNA_m5C:5.77359768882957e-08 47991 chr1 1563448 1563448 1 + G T LUAD 1563445 + 1563425 1563465 41 CTCCGCCATCTCGGCGGGCACTGGAGCCAGCGGCATTGTCG CTCCGCCATCTCGGCGGGCACTGTAGCCAGCGGCATTGTCG < 41bp 0.858592858250791 0.544018471719797 0.8574554 0.6395911 prediction 0.629148773061988 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1563445 chr1:1563448 nonsynonymous SNV 0.014 3 24 hm5C_associated_SNPs_52639 0 0 0 0 1 Ribosome 0.500231643121527 0.500231638040265 0.4357286 1.01625252657556e-08 hm5C_site_47991 DeepMRMD:0.4357286;iRNA_m5C:1.01625252657556e-08 47992 chr12 111330906 111330906 1 + G T UCEC 111330904 + 111330884 111330924 41 AGATCATCCTCTTGCGATCCCAGCAGAAATTGTCCCACGAT AGATCATCCTCTTGCGATCCCATCAGAAATTGTCCCACGAT < 41bp 0.814562701355924 0.495379448480698 0.5427119 0.13000906 prediction 0.629125402711847 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111330904 chr12:111330906 nonsynonymous SNV 0.710 1 23 hm5C_associated_SNPs_52640 0 0 0 0 2 exosome 0.50023164409325 0.500231644296832 0.0854238 0 hm5C_site_47992 DeepMRMD:0.0854238;iRNA_m5C:0 47993 chr11 20625863 20625863 1 + G T LUAD 20625860 + 20625840 20625880 41 GCAAGGGGATGAGAATAAGGCCCGAGGGAACTGGTCCAGCA GCAAGGGGATGAGAATAAGGCCCTAGGGAACTGGTCCAGCA < 41bp 0.814555892431749 0.45642279900008 0.12948328 0.13958123 prediction 0.629111784863497 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20625860 chr11:20625863 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_52641 0 0 0 0 1 unknown 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_47993 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 47994 chr6 151857490 151857490 1 + G T LUAD 151857487 + 151857467 151857507 41 TCTTTCGGAAGTCCCGGTCACGCGGGAGCAGTTAAACCACT TCTTTCGGAAGTCCCGGTCACGCTGGAGCAGTTAAACCACT < 41bp 0.872186021849478 0.557630858865647 0.9143678 0.84009904 prediction 0.629110325967662 Functional Loss - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151857487 chr6:151857490 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_52642 0 0 0 0 2 Nucleus 0.500231643907274 0.500231644911801 0.14853752 0 hm5C_site_47994 DeepMRMD:0.14853752;iRNA_m5C:0 47995 chr6 56880013 56880013 1 + A C rs546241637 56880009 + 56879989 56880029 41 TAAGGGTGGGGGAACCATGTCTACATCTGCATCCACCCTCT TAAGGGTGGGGGAACCATGTCTACCTCTGCATCCACCCTCT < 41bp 0.8145547176058 0.433364978988131 0.47533774 0.067031085 prediction 0.629109435211599 Functional Loss - BEND6 ENSG00000151917 CDS Human protein_coding chr6:56880009 chr6:56880013 synonymous SNV . 0 25 hm5C_associated_SNPs_52643 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921093 0 0 hm5C_site_47995 DeepMRMD:0;iRNA_m5C:0 47996 chr6 43010858 43010858 1 + A C rs77965460 43010854 + 43010834 43010874 41 CAACAGCGCGTCAGGTTTCTCATGATGCTGCTTGGAAGGCC CAACAGCGCGTCAGGTTTCTCATGCTGCTGCTTGGAAGGCC < 41bp 0.869755204896525 0.55520945828948 0.4042259 0.4693477 prediction 0.629091493214089 Functional Loss - CUL7 ENSG00000044090 CDS Human protein_coding chr6:43010854 chr6:43010858 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_52644 0 0 0 0 1 Cytosol 0.500231643921304 0.500231643919834 0 2.93831625697294e-12 hm5C_site_47996 DeepMRMD:0;iRNA_m5C:2.93831625697294e-12 47997 chr16 30594036 30594036 1 + G T TGCT 30594034 + 30594014 30594054 41 TGGATCCACCGATGGGCTTCCAGGGCGGTCTTGCGCTTGAA TGGATCCACCGATGGGCTTCCATGGCGGTCTTGCGCTTGAA < 41bp 0.824636075474616 0.510092029199325 0.9362251 0.85653174 prediction 0.629088092550583 Functional Loss - ZNF785 ENSG00000197162 CDS Human protein_coding chr16:30594034 chr16:30594036 nonsynonymous SNV 0.009 2 23 hm5C_associated_SNPs_52645 0 0 0 0 0 Nucleus 0.500231789150683 0.500231649101283 0.15938672 2.80098800153894e-07 hm5C_site_47997 DeepMRMD:0.15938672;iRNA_m5C:2.80098800153894e-07 47998 chr21 27130449 27130449 1 + G T UCEC 27130446 + 27130426 27130466 41 GAGAATTATGTAGTCTCAACCAAGAAGATTTTTTTCAGCGG GAGAATTATGTAGTCTCAACCAATAAGATTTTTTTCAGCGG < 41bp 0.814541585409999 0.462469666434129 0.81708956 0.16091925 prediction 0.629083170819999 Functional Loss - GABPA ENSG00000154727 CDS Human protein_coding chr21:27130446 chr21:27130449 stopgain 1.000 1 24 hm5C_associated_SNPs_52646 0 0 1 0 1 Cytosol 0.500231641241117 0.500230533733948 0.63417912 2.21501433728122e-06 hm5C_site_47998 DeepMRMD:0.63417912;iRNA_m5C:2.21501433728122e-06 47999 chr6 27806817 27806817 1 + G T UCEC 27806814 + 27806794 27806834 41 GTCACCAAGTACACCAGTTCCAAGTGAGCCCGCCCACCGCG GTCACCAAGTACACCAGTTCCAATTGAGCCCGCCCACCGCG < 41bp 0.857785649254205 0.543244718651767 0.77172416 0.25496593 prediction 0.629081861204874 Functional Loss - HIST1H2BN ENSG00000233822;ENSG00000233822 exonic;splicing Human other chr6:27806814 chr6:27806817 nonsynonymous SNV 0.946 0 24 hm5C_associated_SNPs_52647 0 0 1 0 1 Ribosome 0.500231646738809 0.500231642005452 0.54344832 9.46671407930921e-09 hm5C_site_47999 DeepMRMD:0.54344832;iRNA_m5C:9.46671407930921e-09 48000 chr10 13246327 13246327 1 + A C LUSC 13246323 + 13246303 13246343 41 TTCAAATGTCCCTGTGGAAACAGAAGCATCTCCTTGGACAG TTCAAATGTCCCTGTGGAAACAGACGCATCTCCTTGGACAG < 41bp 0.814540678019863 0.440136229727855 0.8694531 0.8466493 prediction 0.629081356039725 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13246323 chr10:13246327 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_52648 0 0 1 0 1 Nucleus 0.500231643921092 0.500230969693297 0.0456075999999999 1.34845559074392e-06 hm5C_site_48000 DeepMRMD:0.0456075999999999;iRNA_m5C:1.34845559074392e-06 48001 chr17 21826202 21826202 1 + G T LUAD 21826199 + 21826179 21826219 41 AGAAGATGGCTGTATGTTTTCACGGCTCTTCTCTGAGAAGT AGAAGATGGCTGTATGTTTTCACTGCTCTTCTCTGAGAAGT < 41bp 0.8145352792092 0.486852841737486 0.24276644 0.05481276 prediction 0.629070558418399 Functional Loss - FAM27E5 ENSG00000178130 ncRNA_exonic Human lincRNA chr17:21826199 chr17:21826202 . . 0 24 hm5C_associated_SNPs_52649 0 0 0 0 0 unknown 0.500294505907113 0.499955189154935 0 0.000589011814225993 hm5C_site_48001 DeepMRMD:0;iRNA_m5C:0.000589011814225993 48002 chr5 140503564 140503564 1 + G T LUAD 140503561 + 140503541 140503581 41 CCGCCACGCTGCACGTGCTCCTGGTGGATGGCTTCTCCCAG CCGCCACGCTGCACGTGCTCCTGTTGGATGGCTTCTCCCAG < 41bp 0.866744832640894 0.5522139250414 0.53546506 0.10508883 prediction 0.629061815198986 Functional Loss - PCDHB4 ENSG00000081818 CDS Human protein_coding chr5:140503561 chr5:140503564 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_52650 0 0 0 0 0 exosome 0.500231645014849 0.50023158917563 0.0709301200000001 1.11678437608731e-07 hm5C_site_48002 DeepMRMD:0.0709301200000001;iRNA_m5C:1.11678437608731e-07 48003 chr10 27456177 27456177 1 + A C UCEC 27456173 + 27456153 27456193 41 AGTGTGGAATCAGAATGCCACAGCAGTCCCAAATGGGAAAA AGTGTGGAATCAGAATGCCACAGCCGTCCCAAATGGGAAAA < 41bp 0.814518879359384 0.420496792526034 0.13584769 0.15753058 prediction 0.629037758718768 Functional Loss - MASTL ENSG00000120539 CDS Human protein_coding chr10:27456173 chr10:27456177 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_52651 0 0 1 0 1 Cytosol 0.50023164537771 0.500231641598675 0 7.55807016972199e-09 hm5C_site_48003 DeepMRMD:0;iRNA_m5C:7.55807016972199e-09 48004 chr2 39934299 39934299 1 + G T KIRP 39934296 + 39934276 39934316 41 GGGAGGAGAGCTTGACCCAGCACGTGGCTGGACTCCTGTTC GGGAGGAGAGCTTGACCCAGCACTTGGCTGGACTCCTGTTC < 41bp 0.814442722224912 0.447122783546613 0.5063096 0.33462435 prediction 0.628885444449824 Functional Loss - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39934296 chr2:39934299 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52652 0 0 0 0 1 exosome 0.500231644410298 0.500231643921092 0.0126192000000001 9.7841157398193e-10 hm5C_site_48004 DeepMRMD:0.0126192000000001;iRNA_m5C:9.7841157398193e-10 48005 chr1 1387470 1387470 1 + G T COAD 1387468 + 1387448 1387488 41 GGAAGCAGGAGGAGTCCGTGCAGAAGCACCATCAGACCTTC GGAAGCAGGAGGAGTCCGTGCATAAGCACCATCAGACCTTC < 41bp 0.841016958940511 0.526580032818568 0.31682333 0.15079224 prediction 0.628873852243886 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387468 chr1:1387470 nonsynonymous SNV 0.545 3 23 hm5C_associated_SNPs_52653 0 0 0 0 2 Nucleus 0.500231643925068 0.500231643921097 0 7.94120325053882e-12 hm5C_site_48005 DeepMRMD:0;iRNA_m5C:7.94120325053882e-12 48006 chr19 37854259 37854259 1 + G T LUAD 37854256 + 37854236 37854276 41 CACGCACCAGAGGACACACTCAGGGGAGAAGCCATTTGTAT CACGCACCAGAGGACACACTCAGTGGAGAAGCCATTTGTAT < 41bp 0.814436474689662 0.447151307085294 0.946721 0.80360675 prediction 0.628872949379324 Functional Loss - HKR1 ENSG00000181666 CDS Human protein_coding chr19:37854256 chr19:37854259 nonsynonymous SNV 0.976 3 24 hm5C_associated_SNPs_52654 0 0 1 0 0 exosome 0.500231643890535 0.500231644655979 0.2862285 0 hm5C_site_48006 DeepMRMD:0.2862285;iRNA_m5C:0 48007 chr22 26688836 26688836 1 + G T LUAD 26688833 + 26688813 26688853 41 CATCAGAAGTGCCCCTTTGGCTGGACCGAAAGGAGAGTGCG CATCAGAAGTGCCCCTTTGGCTGTACCGAAAGGAGAGTGCG < 41bp 0.870089779997481 0.555654381114544 0.26732844 0.14122084 prediction 0.628870797765873 Functional Loss - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26688833 chr22:26688836 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_52655 0 0 0 0 0 exosome 0.500231619029192 0.500231643921092 0 0 hm5C_site_48007 DeepMRMD:0;iRNA_m5C:0 48008 chr19 3251064 3251064 1 + G T LGG 3251061 + 3251041 3251081 41 GCACGAGCAGAAGACCTTGCCCGGAGTGAGTCCTGTGTGGT GCACGAGCAGAAGACCTTGCCCGTAGTGAGTCCTGTGTGGT < 41bp 0.814426746703 0.440710096281186 0.89261687 0.28850132 prediction 0.628853493405999 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3251061 chr19:3251064 nonsynonymous SNV 0.879 3 24 hm5C_associated_SNPs_52656 0 0 0 0 2 exosome 0.500231646374639 0.500231643920023 0.78523374 4.90923124374376e-09 hm5C_site_48008 DeepMRMD:0.78523374;iRNA_m5C:4.90923124374376e-09 48009 chr17 37898928 37898928 1 + A C ESCA 37898924 + 37898904 37898944 41 AGCCCAATTCTCGGGGGCCCCTCCAGTGCAAGGGGGCTGCT AGCCCAATTCTCGGGGGCCCCTCCCGTGCAAGGGGGCTGCT < 41bp 0.903554514154597 0.589130106424933 0.9634427 0.916832 prediction 0.628848815459327 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37898924 chr17:37898928 nonsynonymous SNV 0.207 0 25 hm5C_associated_SNPs_52657 0 0 1 0 1 Cytosol 0.500231643713007 0.500231643932622 0.0932214 0 hm5C_site_48009 DeepMRMD:0.0932214;iRNA_m5C:0 48010 chr2 12863576 12863576 1 + G T UCEC 12863573 + 12863553 12863593 41 GCTGAGAGAGGAGGAGGCAGCCAGACTGTTCTACCAGATTG GCTGAGAGAGGAGGAGGCAGCCATACTGTTCTACCAGATTG < 41bp 0.81440985879119 0.44627360573336 0.7924942 0.70131314 prediction 0.62881971758238 Functional Loss - TRIB2 ENSG00000071575 CDS Human protein_coding chr2:12863573 chr2:12863576 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_52658 0 0 1 0 0 Cytosol 0.50023164430597 0.500231643922275 0.18236212 7.67388819156167e-10 hm5C_site_48010 DeepMRMD:0.18236212;iRNA_m5C:7.67388819156167e-10 48011 chr18 2890629 2890629 1 + G T COAD 2890626 + 2890606 2890646 41 ACTGGTACAGCACAACCAAGCTGGGGGGTAGATCCAAAAGA ACTGGTACAGCACAACCAAGCTGTGGGGTAGATCCAAAAGA < 41bp 0.814404699373278 0.441912510679134 0.4772885 0.21563807 prediction 0.628809398746556 Functional Loss - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2890626 chr18:2890629 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_52659 0 0 0 0 1 Ribosome 0.500231643921092 0.50023164395624 0 0 hm5C_site_48011 DeepMRMD:0;iRNA_m5C:0 48012 chr2 235951713 235951713 1 + G T SARC 235951711 + 235951691 235951731 41 ACCCTGCTCATGGAGAACATCAGCAGCTGGCGCTCCTTCGC ACCCTGCTCATGGAGAACATCATCAGCTGGCGCTCCTTCGC < 41bp 0.814389244443997 0.499380727445085 0.6631031 0.06806862 prediction 0.628778488887993 Functional Loss - SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235951711 chr2:235951713 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_52660 0 0 1 0 0 cytosol 0.50022911051895 0.500240008840068 0.3262062 0 hm5C_site_48012 DeepMRMD:0.3262062;iRNA_m5C:0 48013 chr1 156902292 156902292 1 + G T ACC 156902289 + 156902269 156902309 41 CAGATGCAGTTCTCCAAGGCCAAGAGTGCATCCAAGGGTCC CAGATGCAGTTCTCCAAGGCCAATAGTGCATCCAAGGGTCC < 41bp 0.814388067455624 0.443450847704651 0.8127354 0.33898014 prediction 0.628776134911247 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156902289 chr1:156902292 nonsynonymous SNV 0.847 3 24 hm5C_associated_SNPs_52661 0 0 0 0 2 exosome 0.500232023108064 0.500231633831901 0.6254708 7.78552325497728e-07 hm5C_site_48013 DeepMRMD:0.6254708;iRNA_m5C:7.78552325497728e-07 48014 chr6 88769255 88769255 1 + G T BRCA 88769252 + 88769232 88769272 41 TGGCTTTCGAGTGTGACACACTGGATAATAATGAAATAGTA TGGCTTTCGAGTGTGACACACTGTATAATAATGAAATAGTA < 41bp 0.814387345062474 0.465296810907097 0.3078016 0.17797086 prediction 0.628774690124948 Functional Loss - SPACA1 ENSG00000118434 CDS Human protein_coding chr6:88769252 chr6:88769255 nonsynonymous SNV 0.701 3 24 hm5C_associated_SNPs_52662 0 0 0 0 2 unknown 0.500231643930248 0.500232837911542 0 0 hm5C_site_48014 DeepMRMD:0;iRNA_m5C:0 48015 chr1 44684765 44684765 1 + A C UCEC 44684761 + 44684741 44684781 41 AGTACCTGCTACAGGAGCTGCGCAAGATTGAGGCCCGGAAG AGTACCTGCTACAGGAGCTGCGCACGATTGAGGCCCGGAAG < 41bp 0.81438553671226 0.41973964532693 0.8523513 0.3699875 prediction 0.62877107342452 Functional Loss - DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44684761 chr1:44684765 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_52663 0 0 1 0 1 chromatin 0.500232138765421 0.500233495188405 0.7047026 0 hm5C_site_48015 DeepMRMD:0.7047026;iRNA_m5C:0 48016 chr5 140573763 140573763 1 + G T LUAD 140573761 + 140573741 140573781 41 CCGCGCTGAGCAGAGAGGCGCTGGTGCGCGTGCTGGTGCTG CCGCGCTGAGCAGAGAGGCGCTTGTGCGCGTGCTGGTGCTG < 41bp 0.814383600466926 0.490277537190523 0.5182683 0.3879909 prediction 0.628767200933851 Functional Loss - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573761 chr5:140573763 synonymous SNV . 0 23 hm5C_associated_SNPs_52664 0 0 0 0 0 exosome 0.500231638586538 0.500231643923166 0.0365366 0 hm5C_site_48016 DeepMRMD:0.0365366;iRNA_m5C:0 48017 chr2 27560188 27560188 1 + G T UCEC 27560185 + 27560165 27560205 41 AACAATGGAGACTTCTCCTCCTGGGGCAGGTAGGGAGCGGC AACAATGGAGACTTCTCCTCCTGTGGCAGGTAGGGAGCGGC < 41bp 0.871950033755594 0.557580362751877 0.62636447 0.35772365 prediction 0.628739342007435 Functional Loss - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27560185 chr2:27560188 synonymous SNV . 0 24 hm5C_associated_SNPs_52665 0 0 0 0 1 Cytosol 0.500231651052256 0.50023164498739 0.25272894 1.21297336619364e-08 hm5C_site_48017 DeepMRMD:0.25272894;iRNA_m5C:1.21297336619364e-08 48018 chr6 26217405 26217405 1 + G T UCEC 26217402 + 26217382 26217422 41 GGCCGAGATCTTAGAGCTAGCTGGCAACGCGGCTCGCGACA GGCCGAGATCTTAGAGCTAGCTGTCAACGCGGCTCGCGACA < 41bp 0.814359294926492 0.463585106619094 0.45280713 0.21687332 prediction 0.628718589852984 Functional Loss - HIST1H2AE ENSG00000168274 CDS Human other chr6:26217402 chr6:26217405 nonsynonymous SNV 0.980 1 24 hm5C_associated_SNPs_52666 0 0 1 0 0 Nucleus 0.50023164392108 0.500231643921081 0 0 hm5C_site_48018 DeepMRMD:0;iRNA_m5C:0 48019 chr12 112587634 112587634 1 + A C SKCM 112587630 + 112587610 112587650 41 CTAGACTGGATTCCCAGCCTCAAGAGACCTCACCAGAGCTG CTAGACTGGATTCCCAGCCTCAAGCGACCTCACCAGAGCTG < 41bp 0.814358865214649 0.425350893203004 0.39021218 0.20646909 prediction 0.628717730429298 Functional Loss - TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112587630 chr12:112587634 nonsynonymous SNV 0.322 0 25 hm5C_associated_SNPs_52667 0 0 1 0 1 Cytosol 0.500236675309893 0.500237412587219 0 0 hm5C_site_48019 DeepMRMD:0;iRNA_m5C:0 48020 chrX 134989171 134989171 1 + G T UCEC 134989169 + 134989149 134989189 41 CATCTTGTCAACTGCTTCAACAGGGCTTATTAATGTGGCAG CATCTTGTCAACTGCTTCAACATGGCTTATTAATGTGGCAG < 41bp 0.814340119789455 0.492278768486806 0.7715103 0.14584231 prediction 0.62868023957891 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134989169 chrX:134989171 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_52668 0 0 1 0 2 Cytosol 0.500108368292766 0.500233746911484 0.5430206 0 hm5C_site_48020 DeepMRMD:0.5430206;iRNA_m5C:0 48021 chr1 227946881 227946881 1 + G T CESC 227946878 + 227946858 227946898 41 AACAGAGTCTCACGTTAAACCAGGGAGGCTCACCGTCCTTG AACAGAGTCTCACGTTAAACCAGTGAGGCTCACCGTCCTTG < 41bp 0.814340046932866 0.433086893005146 0.9178035 0.24893102 prediction 0.628680093865731 Functional Loss - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227946878 chr1:227946881 nonsynonymous SNV 0.025 4 24 hm5C_associated_SNPs_52669 0 0 1 0 0 Ribosome 0.500231660152701 0.500231647656106 0.835607 2.49931890738964e-08 hm5C_site_48021 DeepMRMD:0.835607;iRNA_m5C:2.49931890738964e-08 48022 chr7 139026167 139026167 1 + G T GBM 139026164 + 139026144 139026184 41 GGTCCCCGTCGCACACTTTTCGAGGACTTCTGCGGGAGTTG GGTCCCCGTCGCACACTTTTCGATGACTTCTGCGGGAGTTG < 41bp 0.875002234147731 0.560668325499265 0.91143626 0.3247556 prediction 0.628667817296933 Functional Loss - C7orf55-LUC7L2;FMC1 ENSG00000164898;ENSG00000269955 CDS Human other chr7:139026164 chr7:139026167 stopgain 0.995 1 24 hm5C_associated_SNPs_52670 0 0 1 0 0 unknown 0.500231643921103 0.500231643919742 0.82287252 2.72160072256611e-12 hm5C_site_48022 DeepMRMD:0.82287252;iRNA_m5C:2.72160072256611e-12 48023 chr3 107646807 107646807 1 + G T rs9837335 107646804 + 107646784 107646824 41 CACTGCAGCCTCGCGGGCTGCCCGGGACTTCATCAAGCCCG CACTGCAGCCTCGCGGGCTGCCCTGGACTTCATCAAGCCCG < 41bp 0.814332393864475 0.463758722862891 0.6850873 0.25911945 prediction 0.628664787728951 Functional Loss - LINC00636 ENSG00000240423 ncRNA_exonic Human lincRNA chr3:107646804 chr3:107646807 . . 0 24 hm5C_associated_SNPs_52671 0 0 0 0 1 unknown 0.500231643921092 0.500231643921457 0.3701746 0 hm5C_site_48023 DeepMRMD:0.3701746;iRNA_m5C:0 48024 chr9 100823218 100823218 1 + G T PRAD 100823216 + 100823196 100823236 41 GAGTTCAGCCATGACCAGTACAGGGAGCTGCAGAGGTACGC GAGTTCAGCCATGACCAGTACATGGAGCTGCAGAGGTACGC < 41bp 0.819006722466756 0.504675632731997 0.5127233 0.28274095 prediction 0.628662179469517 Functional Loss - NANS ENSG00000095380 CDS Human protein_coding chr9:100823216 chr9:100823218 nonsynonymous SNV 0.993 1 23 hm5C_associated_SNPs_52672 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921129 0.0254466 0 hm5C_site_48024 DeepMRMD:0.0254466;iRNA_m5C:0 48025 chr19 51228594 51228594 1 + A C OV 51228590 + 51228570 51228610 41 GCGCCCAGCCCAGCGCCTCGCCGCATCCGCTCAGCCCGGAC GCGCCCAGCCCAGCGCCTCGCCGCCTCCGCTCAGCCCGGAC < 41bp 0.814322675775789 0.445738834591143 0.25680313 0.11629096 prediction 0.628645351551579 Functional Loss - CLEC11A ENSG00000105472 CDS Human protein_coding chr19:51228590 chr19:51228594 nonsynonymous SNV 0.606 1 25 hm5C_associated_SNPs_52673 0 0 0 0 0 Ribosome 0.500231643951555 0.500231643836646 0 2.29816832231222e-10 hm5C_site_48025 DeepMRMD:0;iRNA_m5C:2.29816832231222e-10 48026 chr12 56524691 56524691 1 + A C LUSC 56524687 + 56524667 56524707 41 TCTGCAAACATTTACATTTACACGAGTGGAACTGGGTGAAA TCTGCAAACATTTACATTTACACGCGTGGAACTGGGTGAAA < 41bp 0.894913029960882 0.580594273759751 0.07281196 0.060825557 prediction 0.628637512402262 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56524687 chr12:56524691 synonymous SNV . 0 25 hm5C_associated_SNPs_52674 0 0 1 0 1 Endoplasmic reticulum 0.500231665741709 0.500231643930506 0 4.36224061317603e-08 hm5C_site_48026 DeepMRMD:0;iRNA_m5C:4.36224061317603e-08 48027 chr14 51707023 51707023 1 + G T LUSC 51707021 + 51707001 51707041 41 AAGCGGCGAAATGGCGCCCTCCGGGAGTCTTGCAGTTCCCC AAGCGGCGAAATGGCGCCCTCCTGGAGTCTTGCAGTTCCCC < 41bp 0.817078925333614 0.502776885200431 0.91219777 0.29055864 prediction 0.628604080266367 Functional Loss - TMX1 ENSG00000139921 CDS Human protein_coding chr14:51707021 chr14:51707023 nonsynonymous SNV 0.027 1 23 hm5C_associated_SNPs_52675 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921094 0.82439554 0 hm5C_site_48027 DeepMRMD:0.82439554;iRNA_m5C:0 48028 chr16 1034810 1034810 1 + G T BLCA 1034807 + 1034787 1034827 41 GGACGCCGGCCGGTGGACAGCGGGCGCCAGAACATCGACTT GGACGCCGGCCGGTGGACAGCGGTCGCCAGAACATCGACTT < 41bp 0.878270444592123 0.56397209982953 0.8954159 0.31665203 prediction 0.628596689525187 Functional Loss - SOX8 ENSG00000005513 CDS Human protein_coding chr16:1034807 chr16:1034810 synonymous SNV . 0 24 hm5C_associated_SNPs_52676 0 0 0 0 0 exosome 0.500231644070919 0.500231643943381 0.7908318 2.55076626487494e-10 hm5C_site_48028 DeepMRMD:0.7908318;iRNA_m5C:2.55076626487494e-10 48029 chr10 47087773 47087773 1 + G T COAD 47087770 + 47087750 47087790 41 GGCTTTCTCAACACCAACTTCAAGAAGGAGATCAAGGCCCT GGCTTTCTCAACACCAACTTCAATAAGGAGATCAAGGCCCT < 41bp 0.814293352126921 0.44605059843317 0.4696454 0.16236505 prediction 0.628586704253842 Functional Loss - NPY4R;NPY4R2 ENSG00000204174 CDS Human protein_coding chr10:47087770 chr10:47087773 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_52677 0 0 0 0 0 unknown 0.500231523424584 0.500231644164193 0 0 hm5C_site_48029 DeepMRMD:0;iRNA_m5C:0 48030 chr19 52089964 52089964 1 + G T UCEC 52089961 + 52089941 52089981 41 GGATATGGTAGGTGAGTTCACAAGAGATGGTTCATGGTGTT GGATATGGTAGGTGAGTTCACAATAGATGGTTCATGGTGTT < 41bp 0.856580034719818 0.542291962216116 0.7281773 0.1909517 prediction 0.628576145007404 Functional Loss - ZNF175 ENSG00000105497 CDS Human protein_coding chr19:52089961 chr19:52089964 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_52678 0 0 0 0 1 chromatin 0.500231643921092 0.500231643920937 0.4563546 3.10418357685194e-13 hm5C_site_48030 DeepMRMD:0.4563546;iRNA_m5C:3.10418357685194e-13 48031 chr17 56232578 56232578 1 + G T UCEC 56232575 + 56232555 56232595 41 TCTTAGGGTTTTCACAGACCCAAGAGCTCCAGAAATTCCTG TCTTAGGGTTTTCACAGACCCAATAGCTCCAGAAATTCCTG < 41bp 0.850055849461022 0.535773902787709 0.1906564 0.07430941 prediction 0.628563893346626 Functional Loss - OR4D1 ENSG00000141194 CDS Human protein_coding chr17:56232575 chr17:56232578 stopgain 0.934 0 24 hm5C_associated_SNPs_52679 0 0 0 0 0 unknown 0.500231643919745 0.500231643921092 0 0 hm5C_site_48031 DeepMRMD:0;iRNA_m5C:0 48032 chr11 55595330 55595330 1 + G T LUAD 55595327 + 55595307 55595347 41 TTGAATGAGAGTGTTACCATCATGATCATCCTCACCTCCTA TTGAATGAGAGTGTTACCATCATTATCATCCTCACCTCCTA < 41bp 0.814281288082418 0.461154171842505 0.14344487 0.040498912 prediction 0.628562576164837 Functional Loss - OR5L2 ENSG00000205030 CDS Human protein_coding chr11:55595327 chr11:55595330 nonsynonymous SNV 0.078 0 24 hm5C_associated_SNPs_52680 0 0 0 0 0 unknown 0.500231643630377 0.500231643914149 0 0 hm5C_site_48032 DeepMRMD:0;iRNA_m5C:0 48033 chr10 99338039 99338039 1 + G T UCEC 99338036 + 99338016 99338056 41 AGACGTCCCTGGACCTGCGGCGGGAGATCATCGATGTGGGC AGACGTCCCTGGACCTGCGGCGGTAGATCATCGATGTGGGC < 41bp 0.883744158889245 0.569495521684818 0.5316343 0.2526248 prediction 0.628497274408853 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99338036 chr10:99338039 stopgain 0.986 1 24 hm5C_associated_SNPs_52681 0 0 0 0 1 exosome 0.500231583680856 0.500231645578279 0.0632686 0 hm5C_site_48033 DeepMRMD:0.0632686;iRNA_m5C:0 48034 chr20 61299221 61299221 1 + G T CESC 61299219 + 61299199 61299239 41 GTACTTCTCACTGTGCCACGCAGGGTGCCCTGCAGCCACGG GTACTTCTCACTGTGCCACGCATGGTGCCCTGCAGCCACGG < 41bp 0.847315205311771 0.533067641968297 0.9101097 0.546247 prediction 0.628495126686948 Functional Loss - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61299219 chr20:61299221 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_52682 0 0 1 0 1 Endoplasmic reticulum 0.500231643923045 0.500231640419939 0.7277254 7.00621205496077e-09 hm5C_site_48034 DeepMRMD:0.7277254;iRNA_m5C:7.00621205496077e-09 48035 chr20 3729932 3729932 1 + G T LUAD 3729930 + 3729910 3729950 41 CCGCACGTTCCTGGTGGAGTCAGGCGTAGGAGAGCTGTGGG CCGCACGTTCCTGGTGGAGTCATGCGTAGGAGAGCTGTGGG < 41bp 0.814247288712559 0.477050235463846 0.8881837 0.4345594 prediction 0.628494577425118 Functional Loss - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3729930 chr20:3729932 nonsynonymous SNV 0.868 3 23 hm5C_associated_SNPs_52683 0 0 0 0 2 exosome 0.500231567430412 0.500231643907562 0.7763674 0 hm5C_site_48035 DeepMRMD:0.7763674;iRNA_m5C:0 48036 chr20 2597739 2597739 1 + A T LUSC 2597735 + 2597715 2597755 41 CAGGATGGGCTCCTTCTATGCTCCAGGCCTGGTGGGCATTA CAGGATGGGCTCCTTCTATGCTCCTGGCCTGGTGGGCATTA < 41bp 0.814608267913471 0.500363588088504 0.85285103 0.19740039 prediction 0.628489359649934 Functional Loss - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2597735 chr20:2597739 synonymous SNV . 0 25 hm5C_associated_SNPs_52684 0 0 0 0 1 exosome 0.50023164392109 0.500231643921092 0.70570206 0 hm5C_site_48036 DeepMRMD:0.70570206;iRNA_m5C:0 48037 chr14 31346934 31346934 1 + G T COAD 31346932 + 31346912 31346952 41 ATATGTGGGGCTGCTGTCCACAGGTAAGCCCAAACACACCA ATATGTGGGGCTGCTGTCCACATGTAAGCCCAAACACACCA < 41bp 0.814226924330023 0.489810960583097 0.8404379 0.24147356 prediction 0.628453848660045 Functional Loss - COCH ENSG00000100473 CDS Human protein_coding chr14:31346932 chr14:31346934 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_52685 0 0 1 0 1 Cytosol 0.500231629709753 0.500231643921059 0.6808758 0 hm5C_site_48037 DeepMRMD:0.6808758;iRNA_m5C:0 48038 chr4 39439400 39439400 1 + G T LUAD 39439397 + 39439377 39439417 41 GTTATACTGCCTGGTCTCTCCTGGATGGCTTTGAATGGCAG GTTATACTGCCTGGTCTCTCCTGTATGGCTTTGAATGGCAG < 41bp 0.814224041308101 0.45489055562139 0.4268809 0.13727364 prediction 0.628448082616202 Functional Loss - KLB ENSG00000134962 CDS Human protein_coding chr4:39439397 chr4:39439400 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52686 0 0 1 0 1 Cytosol 0.500231643100854 0.500231643921808 0 0 hm5C_site_48038 DeepMRMD:0;iRNA_m5C:0 48039 chr5 434632 434632 1 + G T LUAD 434629 + 434609 434649 41 CGCACCTGGGGCACGGCGTGCGGGGGGCTCAGCCCCATGGG CGCACCTGGGGCACGGCGTGCGGTGGGCTCAGCCCCATGGG < 41bp 0.88384927251511 0.569632770260617 0.932089 0.81038916 prediction 0.628433004508985 Functional Loss - AHRR ENSG00000063438 CDS Human protein_coding chr5:434629 chr5:434632 nonsynonymous SNV 0.005 3 24 hm5C_associated_SNPs_52687 0 0 1 0 0 chromatin 0.50023164629862 0.500231643921092 0.24339968 4.75505523844788e-09 hm5C_site_48039 DeepMRMD:0.24339968;iRNA_m5C:4.75505523844788e-09 48040 chr19 42265212 42265212 1 + G T SKCM 42265209 + 42265189 42265229 41 AACTCCAACCCCGTGGAGGACAAGGATGCTGTGGCCTTCAC AACTCCAACCCCGTGGAGGACAATGATGCTGTGGCCTTCAC < 41bp 0.814216462468893 0.438156425615374 0.3770492 0.28785113 prediction 0.628432924937786 Functional Loss - CEACAM6 ENSG00000086548 CDS Human protein_coding chr19:42265209 chr19:42265212 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_52688 0 0 0 0 1 Ribosome 0.500231643921093 0.500231643921124 0 0 hm5C_site_48040 DeepMRMD:0;iRNA_m5C:0 48041 chr16 15490051 15490051 1 + G T UCEC 15490048 + 15490028 15490068 41 GTCGGTGCGCCCATCGCGGTCTCGGCCTTCTATGTCGGTGA GTCGGTGCGCCCATCGCGGTCTCTGCCTTCTATGTCGGTGA < 41bp 0.814201875774379 0.443767094493007 0.15961328 0.0893307 prediction 0.628403751548757 Functional Loss - MPV17L ENSG00000156968;ENSG00000261130 CDS Human other chr16:15490048 chr16:15490051 synonymous SNV . 0 24 hm5C_associated_SNPs_52689 0 0 1 0 1 Nucleus 0.500231709233147 0.500231624954081 0 1.68558132340735e-07 hm5C_site_48041 DeepMRMD:0;iRNA_m5C:1.68558132340735e-07 48042 chr8 144103160 144103160 1 + G T LUAD 144103157 + 144103137 144103177 41 AAGCGTCACCCTGCTGGGTGCCGGGCTGCTGCTGAGCCTGC AAGCGTCACCCTGCTGGGTGCCGTGCTGCTGCTGAGCCTGC < 41bp 0.814197032709624 0.450030252968061 0.70285463 0.1059348 prediction 0.628394065419248 Functional Loss - LY6E ENSG00000160932 CDS Human protein_coding chr8:144103157 chr8:144103160 nonsynonymous SNV 0.266 3 24 hm5C_associated_SNPs_52690 0 0 1 0 0 Endoplasmic reticulum 0.500781113537506 0.500231655284411 0.40570926 0.00109891650618898 hm5C_site_48042 DeepMRMD:0.40570926;iRNA_m5C:0.00109891650618898 48043 chr2 74056105 74056105 1 + G T rs77194291 74056102 + 74056082 74056122 41 TGTGACGTTTCCGGAACCTCCGGGTGTCATCCGCGGGGAAA TGTGACGTTTCCGGAACCTCCGGTTGTCATCCGCGGGGAAA < 41bp 0.854831461459313 0.540642514370713 0.919283 0.84584177 prediction 0.628377894177199 Functional Loss - STAMBP ENSG00000124356 UTR5 Human protein_coding chr2:74056102 chr2:74056105 . . 0 24 hm5C_associated_SNPs_52691 0 0 1 0 2 Ribosome 0.500232867448225 0.500231050602121 0.14688246 3.63369220801602e-06 hm5C_site_48043 DeepMRMD:0.14688246;iRNA_m5C:3.63369220801602e-06 48044 chr19 46205121 46205121 1 + G T THYM 46205119 + 46205099 46205139 41 GGAAGTGATGTACTTCCAACCCGGGGAGCCCTTTGGCTCTG GGAAGTGATGTACTTCCAACCCTGGGAGCCCTTTGGCTCTG < 41bp 0.832689780346069 0.518507214240204 0.93156 0.2239829 prediction 0.62836513221173 Functional Loss - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46205119 chr19:46205121 nonsynonymous SNV 0.904 3 23 hm5C_associated_SNPs_52692 0 0 1 0 2 chromatin 0.500231644328945 0.50023164391084 0.86312 8.36209101962027e-10 hm5C_site_48044 DeepMRMD:0.86312;iRNA_m5C:8.36209101962027e-10 48045 chr17 56247485 56247485 1 + A C LUSC 56247481 + 56247461 56247501 41 TGGGTGGGAGGCTTTGTCCACTCTATTGTCCAGCTGGCTCT TGGGTGGGAGGCTTTGTCCACTCTCTTGTCCAGCTGGCTCT < 41bp 0.814175067960908 0.434714216500482 0.89801764 0.20713288 prediction 0.628350135921816 Functional Loss - OR4D2 ENSG00000255713 CDS Human protein_coding chr17:56247481 chr17:56247485 nonsynonymous SNV 0.657 1 25 hm5C_associated_SNPs_52693 0 0 0 0 0 unknown 0.500231643921092 0.500231643920107 0.79603528 1.96953564568503e-12 hm5C_site_48045 DeepMRMD:0.79603528;iRNA_m5C:1.96953564568503e-12 48046 chr15 68126112 68126112 1 + A C LIHC 68126108 + 68126088 68126128 41 GACGCCCTGCACCATTTCTCCTGCAAGATGCTGACGCCCCG GACGCCCTGCACCATTTCTCCTGCCAGATGCTGACGCCCCG < 41bp 0.81416722627041 0.430654270637433 0.40110436 0.23908043 prediction 0.628334452540821 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68126108 chr15:68126112 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_52694 0 0 0 0 1 exosome 0.500289032610347 0.500231637781164 0 0.000114789658365311 hm5C_site_48046 DeepMRMD:0;iRNA_m5C:0.000114789658365311 48047 chr17 56327796 56327796 1 + G T BLCA 56327793 + 56327773 56327813 41 TAGGCCCGGGAGGTATCTAACAAGATTGTTGGCTATCTGAA TAGGCCCGGGAGGTATCTAACAATATTGTTGGCTATCTGAA < 41bp 0.814164761209484 0.448210217868853 0.93017924 0.80440557 prediction 0.628329522418969 Functional Loss - LPO ENSG00000167419 CDS Human protein_coding chr17:56327793 chr17:56327796 nonsynonymous SNV 0.882 0 24 hm5C_associated_SNPs_52695 0 0 0 0 2 cytosol 0.500231645517416 0.500231643931881 0.25154734 3.17106918501509e-09 hm5C_site_48047 DeepMRMD:0.25154734;iRNA_m5C:3.17106918501509e-09 48048 chr6 25972186 25972186 1 + G T LUSC 25972183 + 25972163 25972203 41 GAGGAAGAGAAGTCTTATCTCTGGAGGCTGGAGAAAGAAGA GAGGAAGAGAAGTCTTATCTCTGTAGGCTGGAGAAAGAAGA < 41bp 0.820728284164797 0.506564629281264 0.063981354 0.042170435 prediction 0.628327309767068 Functional Loss - TRIM38 ENSG00000112343 CDS Human protein_coding chr6:25972183 chr6:25972186 nonsynonymous SNV 0.481 4 24 hm5C_associated_SNPs_52696 0 0 1 0 1 Cytosol 0.500231643921093 0.500231643921092 0 1.11022302462516e-15 hm5C_site_48048 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 48049 chr1 152692570 152692570 1 + G T COAD 152692568 + 152692548 152692588 41 GACGCTGGATTCAGCGGCCCCAGAACTGCAACACAGGATCA GACGCTGGATTCAGCGGCCCCATAACTGCAACACAGGATCA < 41bp 0.814150900347094 0.498751279957535 0.40112534 0.078244895 prediction 0.628301800694188 Functional Loss - C1orf68 ENSG00000198854 CDS Human protein_coding chr1:152692568 chr1:152692570 nonsynonymous SNV 0.084 3 23 hm5C_associated_SNPs_52697 0 0 0 0 0 exosome 0.500231643932857 0.500231594628189 0 9.86093360300089e-08 hm5C_site_48049 DeepMRMD:0;iRNA_m5C:9.86093360300089e-08 48050 chr17 72470012 72470012 1 + G T LUAD 72470010 + 72469990 72470030 41 AGGTTGAGGTGTCCGTGTTCCCGGGTGAGCCCCTCCTTCCC AGGTTGAGGTGTCCGTGTTCCCTGGTGAGCCCCTCCTTCCC < 41bp 0.814122255942177 0.49426748344652 0.9328688 0.5060332 prediction 0.628244511884354 Functional Loss - CD300A ENSG00000167851 CDS Human protein_coding chr17:72470010 chr17:72470012 synonymous SNV . 0 23 hm5C_associated_SNPs_52698 0 0 0 0 1 Endoplasmic reticulum 0.500231643921024 0.500231643921091 0.8536712 0 hm5C_site_48050 DeepMRMD:0.8536712;iRNA_m5C:0 48051 chr4 187197050 187197050 1 + G T PRAD 187197047 + 187197027 187197067 41 AATCCTGTGCACTTTCTAATCTGGGTAATTATCGACTTCTT AATCCTGTGCACTTTCTAATCTGTGTAATTATCGACTTCTT < 41bp 0.814106727744424 0.464457456052677 0.33668458 0.047601104 prediction 0.628213455488848 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187197047 chr4:187197050 nonsynonymous SNV 0.827 3 24 hm5C_associated_SNPs_52699 0 0 1 0 1 cytosol 0.500231474940924 0.500231643921092 0 0 hm5C_site_48051 DeepMRMD:0;iRNA_m5C:0 48052 chr4 72897911 72897911 1 + G T LUAD 72897909 + 72897889 72897929 41 CCTGCCGCCGACAGGGCTCGCCGGGAGAGGTAACAGCATGG CCTGCCGCCGACAGGGCTCGCCTGGAGAGGTAACAGCATGG < 41bp 0.828133356949424 0.514033022700541 0.8435678 0.31163678 prediction 0.628200668497767 Functional Loss - NPFFR2 ENSG00000056291 CDS Human protein_coding chr4:72897909 chr4:72897911 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52700 0 0 0 0 1 nucleoplasm 0.500231643921093 0.500231643921092 0.6871356 1.55431223447522e-15 hm5C_site_48052 DeepMRMD:0.6871356;iRNA_m5C:1.55431223447522e-15 48053 chr3 19492815 19492815 1 + G T UCEC 19492812 + 19492792 19492832 41 CGGGGGAGTATCTGCTGCGTCAAGGGGATGCTTTGCAGGCC CGGGGGAGTATCTGCTGCGTCAATGGGATGCTTTGCAGGCC < 41bp 0.814078919489166 0.463624311769938 0.9062352 0.42331162 prediction 0.628157838978332 Functional Loss - KCNH8 ENSG00000183960 CDS Human protein_coding chr3:19492812 chr3:19492815 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_52701 0 0 0 1 0 exosome 0.500231643921092 0.500231643921092 0.8124704 0 hm5C_site_48053 DeepMRMD:0.8124704;iRNA_m5C:0 48054 chr18 74963096 74963096 1 + A C COAD 74963092 + 74963072 74963112 41 CAGTGGCCCGACCCTCGCCACAAGAAGGCCTACGTGGTGTG CAGTGGCCCGACCCTCGCCACAAGCAGGCCTACGTGGTGTG < 41bp 0.814076383053551 0.440866812856759 0.13189837 0.01555416 prediction 0.628152766107103 Functional Loss - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74963092 chr18:74963096 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_52702 0 0 0 0 1 exosome 0.500231643921124 0.500231643921092 0 6.46149800331841e-14 hm5C_site_48054 DeepMRMD:0;iRNA_m5C:6.46149800331841e-14 48055 chr18 74963095 74963095 1 + G T COAD 74963092 + 74963072 74963112 41 CAGTGGCCCGACCCTCGCCACAAGAAGGCCTACGTGGTGTG CAGTGGCCCGACCCTCGCCACAATAAGGCCTACGTGGTGTG < 41bp 0.814076383053551 0.450355510217515 0.13189837 0.03368935 prediction 0.628152766107103 Functional Loss - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74963092 chr18:74963095 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_52703 0 0 0 0 1 exosome 0.500231643921124 0.500231643921092 0 6.32827124036339e-14 hm5C_site_48055 DeepMRMD:0;iRNA_m5C:6.32827124036339e-14 48056 chr7 98951688 98951688 1 + G T BLCA 98951686 + 98951666 98951706 41 TCTCTGCCAGTGGGAGCCGCCTGGCCTGGGTCAGCCACGAC TCTCTGCCAGTGGGAGCCGCCTTGCCTGGGTCAGCCACGAC < 41bp 0.814063934119909 0.496733138843998 0.24483216 0.11671314 prediction 0.628127868239818 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98951686 chr7:98951688 synonymous SNV . 0 23 hm5C_associated_SNPs_52704 0 0 1 0 1 Cytosol 0.500231643968601 0.500231643921109 0 9.498579700562e-11 hm5C_site_48056 DeepMRMD:0;iRNA_m5C:9.498579700562e-11 48057 chr12 7475049 7475049 1 + G T SKCM 7475046 + 7475026 7475066 41 GAGTCTGCGGCACTGCTTGACCGGAGGGGAGCCACTCAACC GAGTCTGCGGCACTGCTTGACCGTAGGGGAGCCACTCAACC < 41bp 0.814061681893573 0.432096388694784 0.7928904 0.14110258 prediction 0.628123363787146 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7475046 chr12:7475049 nonsynonymous SNV 0.937 3 24 hm5C_associated_SNPs_52705 0 0 0 0 2 exosome 0.500231636409457 0.500231581781338 0.5857808 1.0925623672442e-07 hm5C_site_48057 DeepMRMD:0.5857808;iRNA_m5C:1.0925623672442e-07 48058 chr16 69149137 69149137 1 + G T LGG 69149135 + 69149115 69149155 41 CCGGCGATGTGGGAAGAAGCCGGAGCAGTACAGCTTGGCTT CCGGCGATGTGGGAAGAAGCCGTAGCAGTACAGCTTGGCTT < 41bp 0.827333235635915 0.513275769657511 0.8627841 0.46392456 prediction 0.628114931956807 Functional Loss - HAS3 ENSG00000103044 CDS Human protein_coding chr16:69149135 chr16:69149137 stopgain 0.987 1 23 hm5C_associated_SNPs_52706 0 0 0 0 0 nucleus 0.500231644061857 0.500231643920405 0.7255682 2.82903256376699e-10 hm5C_site_48058 DeepMRMD:0.7255682;iRNA_m5C:2.82903256376699e-10 48059 chr15 60297656 60297656 1 + G T rs185361903 60297653 + 60297633 60297673 41 GGGCGGCGTGGCGCAGCCCTCGGGCTTCAAGCACCCCTTCG GGGCGGCGTGGCGCAGCCCTCGGTCTTCAAGCACCCCTTCG < 41bp 0.878947279007775 0.564903191174569 0.9388559 0.27367455 prediction 0.628088175666411 Functional Loss - FOXB1 ENSG00000171956 CDS Human protein_coding chr15:60297653 chr15:60297656 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_52707 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0.8777118 0 hm5C_site_48059 DeepMRMD:0.8777118;iRNA_m5C:0 48060 chr1 2123076 2123076 1 + A C rs368384245 2123072 + 2123052 2123092 41 CGCCTGTAATCCCAGCTACTCAGGAGACTGAGGCAGGAGAA CGCCTGTAATCCCAGCTACTCAGGCGACTGAGGCAGGAGAA < 41bp 0.818525559781264 0.5044892632315 0.9391733 0.93883294 prediction 0.628072593099528 Functional Loss - FAAP20 ENSG00000269554 UTR3 Human other chr1:2123072 chr1:2123076 . . 0 25 hm5C_associated_SNPs_52708 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.000680720000000079 0 hm5C_site_48060 DeepMRMD:0.000680720000000079;iRNA_m5C:0 48061 chr22 21538215 21538215 1 + G T UCEC 21538212 + 21538192 21538232 41 GACGCCATCCAGGGCATCGCCAAGGAGTACGCCGTCCACGG GACGCCATCCAGGGCATCGCCAATGAGTACGCCGTCCACGG < 41bp 0.836522577360656 0.522493604657634 0.52990365 0.15026695 prediction 0.628057945406045 Functional Loss - FAM230B ENSG00000215498 ncRNA_exonic Human processed_transcript chr22:21538212 chr22:21538215 . . 0 24 hm5C_associated_SNPs_52709 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.0598072999999999 0 hm5C_site_48061 DeepMRMD:0.0598072999999999;iRNA_m5C:0 48062 chr5 140774270 140774270 1 + A C rs138625114 140774266 + 140774246 140774286 41 CACGGGCGAGGTGCGCACGGCGCGAGCCCTGCTGGACAGAG CACGGGCGAGGTGCGCACGGCGCGCGCCCTGCTGGACAGAG < 41bp 0.81402784583408 0.449997167603172 0.17426813 0.04611674 prediction 0.62805569166816 Functional Loss - PCDHGA8 ENSG00000253767 CDS Human protein_coding chr5:140774266 chr5:140774270 synonymous SNV . 0 25 hm5C_associated_SNPs_52710 0 0 0 0 0 exosome 0.500231642150232 0.500231643920758 0 0 hm5C_site_48062 DeepMRMD:0;iRNA_m5C:0 48063 chr15 65235752 65235752 1 + G T LUSC 65235750 + 65235730 65235770 41 AGCAGATATGCTCCTCATTGCTGGGGTTGACTTAAACCTGA AGCAGATATGCTCCTCATTGCTTGGGTTGACTTAAACCTGA < 41bp 0.814015420206364 0.499168737653545 0.8292123 0.4760731 prediction 0.628030840412728 Functional Loss - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65235750 chr15:65235752 nonsynonymous SNV 0.405 4 23 hm5C_associated_SNPs_52711 0 0 0 0 2 nucleoplasm 0.500231644113899 0.50023164390588 0.6584246 4.16038314909883e-10 hm5C_site_48063 DeepMRMD:0.6584246;iRNA_m5C:4.16038314909883e-10 48064 chr19 42353013 42353013 1 + G T UCEC 42353010 + 42352990 42353030 41 TGGTGTGCCGCCTGCTGTACCAAGAACCTGCTGTCTCTCTG TGGTGTGCCGCCTGCTGTACCAATAACCTGCTGTCTCTCTG < 41bp 0.881038204929855 0.567025563667301 0.53226644 0.23314917 prediction 0.628025282525108 Functional Loss - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42353010 chr19:42353013 stopgain 0.999 0 24 hm5C_associated_SNPs_52712 0 0 0 0 1 exosome 0.500231676068795 0.500231644075499 0.06453288 6.39865906926218e-08 hm5C_site_48064 DeepMRMD:0.06453288;iRNA_m5C:6.39865906926218e-08 48065 chr16 55360448 55360448 1 + G T LUAD 55360446 + 55360426 55360466 41 ATGCGGCCGCTGCAGCTGCCCAGAGCTACCCTGGCTACCTG ATGCGGCCGCTGCAGCTGCCCATAGCTACCCTGGCTACCTG < 41bp 0.846176965726109 0.532178180712692 0.8587643 0.278342 prediction 0.627997570026834 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360446 chr16:55360448 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_52713 0 0 0 2 1 exosome 0.50023164392109 0.500231643868413 0.7175286 1.05352393475755e-10 hm5C_site_48065 DeepMRMD:0.7175286;iRNA_m5C:1.05352393475755e-10 48066 chr6 29365079 29365079 1 + G T SARC 29365076 + 29365056 29365096 41 CAGTGGCTACTCAGTACTGTCACGGGGACAATTGCCATGGG CAGTGGCTACTCAGTACTGTCACTGGGACAATTGCCATGGG < 41bp 0.813987912740686 0.452490497241818 0.9437954 0.21055084 prediction 0.627975825481372 Functional Loss - OR12D2 ENSG00000168787 CDS Human other chr6:29365076 chr6:29365079 synonymous SNV . 0 24 hm5C_associated_SNPs_52714 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.8875908 0 hm5C_site_48066 DeepMRMD:0.8875908;iRNA_m5C:0 48067 chr19 56658417 56658417 1 + G T HNSC 56658415 + 56658395 56658435 41 GGGCTGCTCCGCGCCCTGTGCCGGGACTGGCTGCGGCCCGA GGGCTGCTCCGCGCCCTGTGCCTGGACTGGCTGCGGCCCGA < 41bp 0.83849301210301 0.524510295700422 0.8941362 0.16337726 prediction 0.627965432805176 Functional Loss - ZNF444 ENSG00000167685 CDS Human protein_coding chr19:56658415 chr19:56658417 nonsynonymous SNV 0.937 2 23 hm5C_associated_SNPs_52715 0 0 1 0 0 Cytosol 0.500231687492096 0.500231643921092 0.7882724 8.71420069437079e-08 hm5C_site_48067 DeepMRMD:0.7882724;iRNA_m5C:8.71420069437079e-08 48068 chr12 58176927 58176927 1 + G T UCEC 58176924 + 58176904 58176944 41 TCTGCGTCAGTCGCCCCAGCCAAGGCACACATTTTATGCTG TCTGCGTCAGTCGCCCCAGCCAATGCACACATTTTATGCTG < 41bp 0.859952196500561 0.545992205703633 0.3353048 0.15070206 prediction 0.627919981593855 Functional Loss - TSFM ENSG00000123297;ENSG00000257921 CDS Human other chr12:58176924 chr12:58176927 nonsynonymous SNV 0.008 0 24 hm5C_associated_SNPs_52716 0 0 1 0 1 Cytosol 0.500231643254311 0.500231704755952 0 0 hm5C_site_48068 DeepMRMD:0;iRNA_m5C:0 48069 chr3 142467270 142467270 1 + A C rs116718261 142467266 + 142467246 142467286 41 CTGTGAATGCACATTGTGTTCTGCAAAAAACAAAAAGGATA CTGTGAATGCACATTGTGTTCTGCCAAAAACAAAAAGGATA < 41bp 0.813953904507548 0.413672582014574 0.15564138 0.09628147 prediction 0.627907809015095 Functional Loss - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142467266 chr3:142467270 synonymous SNV . 0 25 hm5C_associated_SNPs_52717 0 0 0 0 1 Ribosome 0.500231531795279 0.500231648718732 0 0 hm5C_site_48069 DeepMRMD:0;iRNA_m5C:0 48070 chr2 27292983 27292983 1 + G T COAD 27292980 + 27292960 27293000 41 GCTGCCTCAGGCCAGGCCCCCACGGCCCCGCTCTGCCCCTG GCTGCCTCAGGCCAGGCCCCCACTGCCCCGCTCTGCCCCTG < 41bp 0.813951719798965 0.441506163660298 0.18986028 0.024306 prediction 0.627903439597929 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27292980 chr2:27292983 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52718 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_48070 DeepMRMD:0;iRNA_m5C:0 48071 chr18 72775794 72775794 1 + G T UCEC 72775791 + 72775771 72775811 41 GCTGCCGACCCCGAGGCCCCCGAGATCCAGATGTTCCCACA GCTGCCGACCCCGAGGCCCCCGATATCCAGATGTTCCCACA < 41bp 0.813943351216749 0.490301559809052 0.5577902 0.023144603 prediction 0.627886702433497 Functional Loss - ZNF407 ENSG00000215421 CDS Human protein_coding chr18:72775791 chr18:72775794 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_52719 0 0 0 0 0 Cytosol 0.50023164392045 0.500231643920743 0.1155804 0 hm5C_site_48071 DeepMRMD:0.1155804;iRNA_m5C:0 48072 chr3 121976184 121976184 1 + G T UCEC 121976182 + 121976162 121976202 41 TGTGGTGGGAGCAACTGGCTCAGGCGTCTCCACGGCAGTGG TGTGGTGGGAGCAACTGGCTCATGCGTCTCCACGGCAGTGG < 41bp 0.813930617764021 0.481198103687255 0.9377091 0.1931608 prediction 0.627861235528042 Functional Loss - CASR ENSG00000036828 CDS Human protein_coding chr3:121976182 chr3:121976184 nonsynonymous SNV 0.936 4 23 hm5C_associated_SNPs_52720 0 0 0 0 1 exosome 0.500231645034756 0.500231643921072 0.8754182 2.22736873389806e-09 hm5C_site_48072 DeepMRMD:0.8754182;iRNA_m5C:2.22736873389806e-09 48073 chrX 155232672 155232672 1 + G T READ 155232670 + 155232650 155232690 41 CTGCTTGGGAGTCTCTGTCACAGGGGAAGGACAAGGTGAGG CTGCTTGGGAGTCTCTGTCACATGGGAAGGACAAGGTGAGG < 41bp 0.83481112821731 0.520892341875487 0.91420674 0.8161118 prediction 0.627837572683646 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155232670 chrX:155232672 nonsynonymous SNV 0.006 3 23 hm5C_associated_SNPs_52721 0 0 0 0 1 exosome 0.500231643921088 0.500231643921103 0.19618988 0 hm5C_site_48073 DeepMRMD:0.19618988;iRNA_m5C:0 48074 chr3 160395164 160395164 1 + A C UCEC 160395160 + 160395140 160395180 41 TTCGCTGGGTTCTAAAAATCCGCAAACCAAACAAGCCCAAG TTCGCTGGGTTCTAAAAATCCGCACACCAAACAAGCCCAAG < 41bp 0.813917518606599 0.452221125959778 0.05503729 0.027117282 prediction 0.627835037213197 Functional Loss - ARL14 ENSG00000179674 CDS Human protein_coding chr3:160395160 chr3:160395164 nonsynonymous SNV 0.072 0 25 hm5C_associated_SNPs_52722 0 0 0 0 0 exosome 0.500231643921087 0.500231643921092 0 0 hm5C_site_48074 DeepMRMD:0;iRNA_m5C:0 48075 chrX 150911761 150911761 1 + G T LUSC 150911758 + 150911738 150911778 41 CGCATGTTTGAGTTCTTTGACCGGACAGAGACACGCACCAA CGCATGTTTGAGTTCTTTGACCGTACAGAGACACGCACCAA < 41bp 0.813915833536443 0.443078290613931 0.28023311 0.07086384 prediction 0.627831667072885 Functional Loss - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150911758 chrX:150911761 synonymous SNV . 0 24 hm5C_associated_SNPs_52723 0 0 0 0 0 unknown 0.500231729525327 0.500231644197511 0 1.70655633402461e-07 hm5C_site_48075 DeepMRMD:0;iRNA_m5C:1.70655633402461e-07 48076 chr19 4496311 4496311 1 + G T SARC 4496309 + 4496289 4496329 41 ACTGCTATAGGCCAAGAAATCAGCGAAGAAGCCGCAGTCCT ACTGCTATAGGCCAAGAAATCATCGAAGAAGCCGCAGTCCT < 41bp 0.813897867842512 0.489128813350986 0.8761658 0.6865657 prediction 0.627795735685024 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4496309 chr19:4496311 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_52724 0 0 1 0 2 unknown 0.500231643853508 0.500231644392827 0.3792002 0 hm5C_site_48076 DeepMRMD:0.3792002;iRNA_m5C:0 48077 chr11 73373532 73373532 1 + A C rs112529766 73373528 + 73373508 73373548 41 CCGTCCAGAAATGCCTCTCACACCAGGAGCTCGGCCCTCTC CCGTCCAGAAATGCCTCTCACACCCGGAGCTCGGCCCTCTC < 41bp 0.86182275313977 0.547926401911189 0.18651137 0.056969732 prediction 0.627792702457163 Functional Loss - PLEKHB1 ENSG00000021300 UTR3 Human protein_coding chr11:73373528 chr11:73373532 . . 0 25 hm5C_associated_SNPs_52725 0 0 0 0 0 membrane 0.500231643916184 0.500231643921048 0 0 hm5C_site_48077 DeepMRMD:0;iRNA_m5C:0 48078 chr19 3381733 3381733 1 + G T LUAD 3381730 + 3381710 3381750 41 GATGAGTTCCACCCGTTCATCGAGGCCCTGCTGCCTCACGT GATGAGTTCCACCCGTTCATCGATGCCCTGCTGCCTCACGT < 41bp 0.813894792372689 0.439509035413392 0.9242172 0.38747156 prediction 0.627789584745378 Functional Loss - NFIC ENSG00000141905 CDS Human protein_coding chr19:3381730 chr19:3381733 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_52726 0 0 1 0 1 Ribosome 0.500231643921092 0.500231680634191 0.8484344 0 hm5C_site_48078 DeepMRMD:0.8484344;iRNA_m5C:0 48079 chr12 121434574 121434574 1 + G T SARC 121434572 + 121434552 121434592 41 TGGTGGGGATGGGTGGGCACCTGGGTGGGAGGCTCATGGGG TGGTGGGGATGGGTGGGCACCTTGGTGGGAGGCTCATGGGG < 41bp 0.813855291324577 0.498804047840235 0.8661057 0.7375632 prediction 0.627710582649154 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121434572 chr12:121434574 synonymous SNV . 0 23 hm5C_associated_SNPs_52727 0 0 1 0 0 cytosol 0.500231643923498 0.500231605308712 0.257085 7.72295709605686e-08 hm5C_site_48079 DeepMRMD:0.257085;iRNA_m5C:7.72295709605686e-08 48080 chr4 152567855 152567855 1 + G T UCEC 152567852 + 152567832 152567872 41 TCACTCTGACGCTGGGGAACCAAGAGAGGGATTATATTCTC TCACTCTGACGCTGGGGAACCAATAGAGGGATTATATTCTC < 41bp 0.857585098622219 0.543745602138763 0.33716398 0.15061617 prediction 0.627678992966912 Functional Loss - FAM160A1 ENSG00000164142 CDS Human protein_coding chr4:152567852 chr4:152567855 stopgain 0.996 0 24 hm5C_associated_SNPs_52728 0 0 0 0 1 cytosol 0.50023233913594 0.500231666798977 0 1.3446739244305e-06 hm5C_site_48080 DeepMRMD:0;iRNA_m5C:1.3446739244305e-06 48081 chr6 143792193 143792193 1 + G T STAD 143792190 + 143792170 143792210 41 TAATTGGTGGATATATTTACCTGGATAATGCAGCAGTTGGC TAATTGGTGGATATATTTACCTGTATAATGCAGCAGTTGGC < 41bp 0.849115427397624 0.535276383379635 0.24592808 0.15201184 prediction 0.627678088035978 Functional Loss - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143792190 chr6:143792193 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52729 0 0 1 0 2 chromatin 0.50023171244571 0.500231645076275 0 1.34738870283257e-07 hm5C_site_48081 DeepMRMD:0;iRNA_m5C:1.34738870283257e-07 48082 chr12 81472130 81472130 1 + G T ESCA 81472127 + 81472107 81472147 41 GTGACCGACCCCGAGAGGTTCTGGGGCAAAGCTGCCGAGCA GTGACCGACCCCGAGAGGTTCTGTGGCAAAGCTGCCGAGCA < 41bp 0.872713802728964 0.558905382502805 0.8594282 0.28713953 prediction 0.627616840452318 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81472127 chr12:81472130 nonsynonymous SNV 0.967 4 24 hm5C_associated_SNPs_52730 0 0 1 0 2 cytosol 0.500231643921092 0.500231643921092 0.7188564 0 hm5C_site_48082 DeepMRMD:0.7188564;iRNA_m5C:0 48083 chr7 150163798 150163798 1 + G T BLCA 150163796 + 150163776 150163816 41 GTCAGGAAAGCATGTCAGAGCAGAGCTGCCAGATGTCCGAA GTCAGGAAAGCATGTCAGAGCATAGCTGCCAGATGTCCGAA < 41bp 0.813808010152351 0.488936694759997 0.45921233 0.20645979 prediction 0.627616020304703 Functional Loss - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150163796 chr7:150163798 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_52731 0 0 0 0 1 cytosol 0.500231751940689 0.50023190888973 0 0 hm5C_site_48083 DeepMRMD:0;iRNA_m5C:0 48084 chr2 114256978 114256978 1 + A C rs2757970 114256974 + 114256954 114256994 41 GACGAGGAGGAGGAGGCGAGCCAGAAGTTCCTAGAGCAGTC GACGAGGAGGAGGAGGCGAGCCAGCAGTTCCTAGAGCAGTC < 41bp 0.813801119058487 0.477309499877451 0.89152586 0.87579083 prediction 0.627602238116974 Functional Loss - FOXD4L1 ENSG00000184492 CDS Human protein_coding chr2:114256974 chr2:114256978 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_52732 0 0 0 0 0 exosome 0.500231643920924 0.500231643551964 0.03147006 7.37920613502752e-10 hm5C_site_48084 DeepMRMD:0.03147006;iRNA_m5C:7.37920613502752e-10 48085 chr20 30380605 30380605 1 + G T UCEC 30380603 + 30380583 30380623 41 CCAGCCTTTGCATTGAAGAACAGAATTCGAATGCCCACCAA CCAGCCTTTGCATTGAAGAACATAATTCGAATGCCCACCAA < 41bp 0.817556940670738 0.503758132644296 0.20091105 0.10734841 prediction 0.627597616052882 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30380603 chr20:30380605 nonsynonymous SNV 0.977 4 23 hm5C_associated_SNPs_52733 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 8.88178419700125e-16 hm5C_site_48085 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 48086 chr11 237093 237093 1 + G T LUAD 237091 + 237071 237111 41 CTACAGCAGAGCCAGAACTCCGGGCCCGGGCAGCCCGCTGT CTACAGCAGAGCCAGAACTCCGTGCCCGGGCAGCCCGCTGT < 41bp 0.82676460421599 0.512967999852776 0.92937475 0.9074836 prediction 0.627593208726427 Functional Loss - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:237091 chr11:237093 nonsynonymous SNV 0.930 1 23 hm5C_associated_SNPs_52734 0 0 1 0 1 Ribosome 0.500231643918012 0.500231643920979 0.0437823000000002 0 hm5C_site_48086 DeepMRMD:0.0437823000000002;iRNA_m5C:0 48087 chr17 18286157 18286157 1 + G T LUAD 18286154 + 18286134 18286174 41 AGGCAGGATGCCGCCACCATCCGGAGCCAATACCGAGACCT AGGCAGGATGCCGCCACCATCCGTAGCCAATACCGAGACCT < 41bp 0.878175217531405 0.564431065196943 0.9308464 0.24781942 prediction 0.627488304668925 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18286154 chr17:18286157 stopgain 0.195 0 24 hm5C_associated_SNPs_52735 0 0 0 0 2 exosome 0.500231645770655 0.500231637923052 0.8616928 1.56952071339589e-08 hm5C_site_48087 DeepMRMD:0.8616928;iRNA_m5C:1.56952071339589e-08 48088 chr2 172412391 172412391 1 + G T rs148595636 172412388 + 172412368 172412408 41 AGGCAGTCTGGCACCTCAGTCTGGATTCTAACCATTTCACT AGGCAGTCTGGCACCTCAGTCTGTATTCTAACCATTTCACT < 41bp 0.849671856202105 0.535930120980656 0.4160841 0.25845516 prediction 0.627483470442898 Functional Loss - CYBRD1 ENSG00000071967 UTR3 Human protein_coding chr2:172412388 chr2:172412391 . . 0 24 hm5C_associated_SNPs_52736 0 0 0 1 0 Endoplasmic reticulum 0.500231643039095 0.500231331682609 0 6.22712970743677e-07 hm5C_site_48088 DeepMRMD:0;iRNA_m5C:6.22712970743677e-07 48089 chr1 176659488 176659488 1 + G T BLCA 176659485 + 176659465 176659505 41 CTCCCAAGAGTGAGCTGTGCCGGGAACCAGAGCCCACTAGT CTCCCAAGAGTGAGCTGTGCCGGTAACCAGAGCCCACTAGT < 41bp 0.852593804758441 0.538862927366815 0.876219 0.45676243 prediction 0.627461754783253 Functional Loss - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176659485 chr1:176659488 stopgain 0.655 1 24 hm5C_associated_SNPs_52737 0 0 0 0 1 Cytosol 0.500231626452601 0.500231643908154 0.752438 0 hm5C_site_48089 DeepMRMD:0.752438;iRNA_m5C:0 48090 chr7 149570394 149570394 1 + C A rs189248446 149570397 - 149570377 149570417 41 ACCCGGCGGGAGGCGGAGGGCTGGCGTCCTCGCGGACATCC ACCCGGCGGGAGGCGGAGGGCTGTCGTCCTCGCGGACATCC < 41bp 0.81373087014637 0.468323143294358 0.81252766 0.37241554 prediction 0.62746174029274 Functional Loss - ATP6V0E2-AS1 ENSG00000204934 ncRNA_exonic Human antisense chr7:149570397 chr7:149570394 . . 0 24 hm5C_associated_SNPs_52738 0 0 0 0 1 unknown 0.500231643921091 0.500231643919602 0.62505532 2.97761815204467e-12 hm5C_site_48090 DeepMRMD:0.62505532;iRNA_m5C:2.97761815204467e-12 48091 chr2 27151173 27151173 1 + G T LUAD 27151170 + 27151150 27151190 41 ATCACAGGCCCAGAAGGAATCGAGATCAGCCGTCCAGAGGA ATCACAGGCCCAGAAGGAATCGATATCAGCCGTCCAGAGGA < 41bp 0.879800248627913 0.566090528696732 0.91473496 0.21391204 prediction 0.627419439862362 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27151170 chr2:27151173 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_52739 0 0 0 0 1 Ribosome 0.500231643921028 0.500231643921092 0.82946992 0 hm5C_site_48091 DeepMRMD:0.82946992;iRNA_m5C:0 48092 chr1 158058193 158058193 1 + G T ACC 158058190 + 158058170 158058210 41 GATGTGACCCTTACCTGTGTCTGGGTTGGGAATCCCCCCCT GATGTGACCCTTACCTGTGTCTGTGTTGGGAATCCCCCCCT < 41bp 0.881443214304209 0.567747066070877 0.8338237 0.20602083 prediction 0.627392296466664 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158058190 chr1:158058193 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52740 0 0 1 0 2 cytosol 0.500231643988883 0.500231644296659 0.6676474 0 hm5C_site_48092 DeepMRMD:0.6676474;iRNA_m5C:0 48093 chr2 223386551 223386551 1 + A C UCEC 223386547 + 223386527 223386567 41 GTGGCCCCGTCCCTCCTCCCCTCCAGTTGTAAAACTGGAAA GTGGCCCCGTCCCTCCTCCCCTCCCGTTGTAAAACTGGAAA < 41bp 0.813695360313787 0.394253354345627 0.91749936 0.2188915 prediction 0.627390720627574 Functional Loss - SGPP2 ENSG00000163082 CDS Human protein_coding chr2:223386547 chr2:223386551 synonymous SNV . 0 25 hm5C_associated_SNPs_52741 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.83499872 0 hm5C_site_48093 DeepMRMD:0.83499872;iRNA_m5C:0 48094 chr10 48370716 48370716 1 + G T LUSC 48370714 + 48370694 48370734 41 CCGCCTGGGCCCTGAGGCTGCTGTGGGCAGGGCGGGCCGGG CCGCCTGGGCCCTGAGGCTGCTTTGGGCAGGGCGGGCCGGG < 41bp 0.831113452926646 0.517424044717293 0.7689432 0.45099077 prediction 0.627378816418705 Functional Loss - ZNF488 ENSG00000165388 CDS Human other chr10:48370714 chr10:48370716 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_52742 0 0 0 0 0 exosome 0.500231643970963 0.500231643921313 0.5378864 9.92999016347085e-11 hm5C_site_48094 DeepMRMD:0.5378864;iRNA_m5C:9.92999016347085e-11 48095 chr5 251218 251218 1 + G T LUAD 251215 + 251195 251235 41 AGCACCTGAAGACGTTCGACCGGGGTGAGCAGACAGTGGGC AGCACCTGAAGACGTTCGACCGGTGTGAGCAGACAGTGGGC < 41bp 0.813689058747629 0.4359304285879 0.9295408 0.54597205 prediction 0.627378117495258 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:251215 chr5:251218 stopgain 0.955 0 24 hm5C_associated_SNPs_52743 0 0 0 0 1 Nucleus 0.500231643920927 0.500231643648184 0.7671375 5.45486766867498e-10 hm5C_site_48095 DeepMRMD:0.7671375;iRNA_m5C:5.45486766867498e-10 48096 chr14 50088247 50088247 1 + G T rs2228449 50088245 + 50088225 50088265 41 CCCAGCCCGAGGCGGACAACCTGACGCTGCGGTACCGGTCC CCCAGCCCGAGGCGGACAACCTTACGCTGCGGTACCGGTCC < 41bp 0.815800939088151 0.502121730876837 0.29437923 0.1789054 prediction 0.627358416422628 Functional Loss - MGAT2 ENSG00000168282 CDS Human protein_coding chr14:50088245 chr14:50088247 synonymous SNV . 0 23 hm5C_associated_SNPs_52744 3 0 1 0 0 Endoplasmic reticulum 0.500235345449117 0.500231649003097 0 7.39289203965932e-06 hm5C_site_48096 DeepMRMD:0;iRNA_m5C:7.39289203965932e-06 Primary ciliary dyskinesia Primary ciliary dyskinesia 48097 chr15 75183755 75183755 1 + G T UCEC 75183752 + 75183732 75183772 41 ACTCACCCCCGAGGGGATGCCAAGATCCTTGACAACCGCAT ACTCACCCCCGAGGGGATGCCAATATCCTTGACAACCGCAT < 41bp 0.869041309194055 0.555373860433873 0.44439736 0.24286774 prediction 0.627334897520365 Functional Loss - MPI ENSG00000178802;ENSG00000178802 exonic;splicing Human other chr15:75183752 chr15:75183755 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52745 0 0 1 0 1 Ribosome 0.500231646210054 0.500231643921093 0 4.57792359576104e-09 hm5C_site_48097 DeepMRMD:0;iRNA_m5C:4.57792359576104e-09 48098 chr12 121647986 121647986 1 + G T ESCA 121647984 + 121647964 121648004 41 GGCCATGGCGGGCTGCTGCGCCGCGCTGGCGGCCTTCCTGT GGCCATGGCGGGCTGCTGCGCCTCGCTGGCGGCCTTCCTGT < 41bp 0.824642341329324 0.51097655439638 0.37060687 0.12211844 prediction 0.62733157386589 Functional Loss - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121647984 chr12:121647986 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_52746 0 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0.500231643921765 0 0 hm5C_site_48098 DeepMRMD:0;iRNA_m5C:0 48099 chr8 22020107 22020107 1 + G T UCEC 22020105 + 22020085 22020125 41 AGGACTACTCCGCAGCTCCCCGGGGCCGATTTGGCATTCCC AGGACTACTCCGCAGCTCCCCGTGGCCGATTTGGCATTCCC < 41bp 0.842965701736212 0.529307711357403 0.9258009 0.5059593 prediction 0.627315980757619 Functional Loss - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22020105 chr8:22020107 synonymous SNV . 0 23 hm5C_associated_SNPs_52747 0 0 0 0 1 Cytosol 0.500231643921093 0.500231643920615 0.8396832 9.5545793499241e-13 hm5C_site_48099 DeepMRMD:0.8396832;iRNA_m5C:9.5545793499241e-13 48100 chr5 129241122 129241122 1 + G T LUSC 129241119 + 129241099 129241139 41 CGGACCTGGGCGCGTTTCATCCCGGGCCGCGTGGAGTTCTT CGGACCTGGGCGCGTTTCATCCCTGGCCGCGTGGAGTTCTT < 41bp 0.865316999408988 0.551669587770202 0.6114203 0.09242019 prediction 0.627294823277572 Functional Loss - CHSY3 ENSG00000198108 CDS Human protein_coding chr5:129241119 chr5:129241122 synonymous SNV . 0 24 hm5C_associated_SNPs_52748 0 0 0 0 0 exosome 0.50018051187129 0.500231643921073 0.2228406 0 hm5C_site_48100 DeepMRMD:0.2228406;iRNA_m5C:0 48101 chr18 28935177 28935177 1 + G T STAD 28935174 + 28935154 28935194 41 GGTGGCATTGGCCTGAGCAGCTTGGGAGGGACAGCCAGCAT GGTGGCATTGGCCTGAGCAGCTTTGGAGGGACAGCCAGCAT < 41bp 0.813642895727435 0.444411962802378 0.18304509 0.13389283 prediction 0.62728579145487 Functional Loss - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28935174 chr18:28935177 nonsynonymous SNV 0.992 0 24 hm5C_associated_SNPs_52749 0 0 0 0 0 unknown 0.500229088313162 0.50022863097103 0 9.14684263664256e-07 hm5C_site_48101 DeepMRMD:0;iRNA_m5C:9.14684263664256e-07 48102 chr4 160273959 160273959 1 + G T TGCT 160273956 + 160273936 160273976 41 ACTCAGTGCCAGTCTCACTGCACGATGAGAGGCGCCAGAGG ACTCAGTGCCAGTCTCACTGCACTATGAGAGGCGCCAGAGG < 41bp 0.813637897753152 0.452373711933773 0.08976725 0.062841564 prediction 0.627275795506305 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160273956 chr4:160273959 nonsynonymous SNV 0.388 4 24 hm5C_associated_SNPs_52750 0 0 0 0 0 Cytosol 0.50023151955074 0.500231341142593 0 3.56816292290674e-07 hm5C_site_48102 DeepMRMD:0;iRNA_m5C:3.56816292290674e-07 48103 chr12 110467387 110467387 1 + G T UCEC 110467384 + 110467364 110467404 41 TCGAACGAGTGCTCATTTTGCAAGACTGAGAGATTTCATCA TCGAACGAGTGCTCATTTTGCAATACTGAGAGATTTCATCA < 41bp 0.813634466974374 0.458633146013137 0.5497055 0.3796587 prediction 0.627268933948748 Functional Loss - ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110467384 chr12:110467387 nonsynonymous SNV 0.972 4 24 hm5C_associated_SNPs_52751 0 0 1 2 1 chromatin 0.500227476721597 0.500227111803594 0.0994109999999999 7.29836005630702e-07 hm5C_site_48103 DeepMRMD:0.0994109999999999;iRNA_m5C:7.29836005630702e-07 48104 chr9 35853718 35853718 1 + G T UCEC 35853715 + 35853695 35853735 41 CCCCTCGTGCCAAGACTGACCACGGGGTCCCATCTGGAGCC CCCCTCGTGCCAAGACTGACCACTGGGTCCCATCTGGAGCC < 41bp 0.880106242202527 0.566477337819012 0.8830147 0.1118395 prediction 0.627257808767031 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35853715 chr9:35853718 nonsynonymous SNV 0.634 1 24 hm5C_associated_SNPs_52752 0 0 0 0 0 cytosol 0.500231643921092 0.500231643179485 0.7660294 1.48321466220125e-09 hm5C_site_48104 DeepMRMD:0.7660294;iRNA_m5C:1.48321466220125e-09 48105 chr11 61736060 61736060 1 + G T rs558728583 61736057 + 61736037 61736077 41 GAAGCTGACGGGGTTAATGGCGGGTGACAGGTGAAAGAGAC GAAGCTGACGGGGTTAATGGCGGTTGACAGGTGAAAGAGAC < 41bp 0.813628501403848 0.455216551087237 0.9190713 0.9048692 prediction 0.627257002807697 Functional Loss - FTH1 ENSG00000269089 CDS Human other chr11:61736057 chr11:61736060 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_52753 0 0 1 0 0 Cytosol 0.500231643921094 0.500231643921092 0.0284042 2.88657986402541e-15 hm5C_site_48105 DeepMRMD:0.0284042;iRNA_m5C:2.88657986402541e-15 48106 chr16 67063330 67063330 1 + A C STAD 67063326 + 67063306 67063346 41 GGAAGATGCCGCGCGTCGTGCCCGACCAGAGAAGCAAGTTC GGAAGATGCCGCGCGTCGTGCCCGCCCAGAGAAGCAAGTTC < 41bp 0.81362297986885 0.454899927060507 0.21336845 0.14256951 prediction 0.6272459597377 Functional Loss - CBFB ENSG00000067955 CDS Human protein_coding chr16:67063326 chr16:67063330 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_52754 0 0 1 0 1 Ribosome 0.500231643921095 0.500231643921108 0 0 hm5C_site_48106 DeepMRMD:0;iRNA_m5C:0 48107 chr1 158813092 158813092 1 + G T UCEC 158813089 + 158813069 158813109 41 TTGCTAAGAAAATTAAAACACAAGAAAAAGCTCCAGTGAAA TTGCTAAGAAAATTAAAACACAATAAAAAGCTCCAGTGAAA < 41bp 0.813609319609289 0.482770769551213 0.553178 0.5127779 prediction 0.627218639218578 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813089 chr1:158813092 stopgain 0.001 0 24 hm5C_associated_SNPs_52755 0 0 0 0 1 exosome 0.501664846295516 0.500339213855188 0.0808001999999999 0.00265126488065559 hm5C_site_48107 DeepMRMD:0.0808001999999999;iRNA_m5C:0.00265126488065559 48108 chr19 58101737 58101737 1 + G T LUAD 58101735 + 58101715 58101755 41 TGTTGCGGCTTCTGAGGTCCCTGGTCTTTCCTGGAGGCAAG TGTTGCGGCTTCTGAGGTCCCTTGTCTTTCCTGGAGGCAAG < 41bp 0.819401587654758 0.505819622670936 0.75514805 0.553699 prediction 0.627163929967644 Functional Loss - ZIK1 ENSG00000171649 CDS Human protein_coding chr19:58101735 chr19:58101737 synonymous SNV . 0 23 hm5C_associated_SNPs_52756 0 0 1 0 0 exosome 0.500231643921075 0.500231643921092 0.4028981 0 hm5C_site_48108 DeepMRMD:0.4028981;iRNA_m5C:0 48109 chr17 41180096 41180096 1 + G T COAD 41180093 + 41180073 41180113 41 CATAGTGGCAAGGAGAGACTCAAGAGTTCTGCCCCAATGCC CATAGTGGCAAGGAGAGACTCAATAGTTCTGCCCCAATGCC < 41bp 0.88031969335539 0.566741874997002 0.6949622 0.2920212 prediction 0.627155636716777 Functional Loss - RND2 ENSG00000108830 CDS Human protein_coding chr17:41180093 chr17:41180096 stopgain 1.000 1 24 hm5C_associated_SNPs_52757 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921102 0.3899244 0 hm5C_site_48109 DeepMRMD:0.3899244;iRNA_m5C:0 48110 chr15 57731629 57731629 1 + G T ACC 57731626 + 57731606 57731646 41 TTCTGGAAACCGAAGGTAGTCAGGAAAGTACAGTGATCCGT TTCTGGAAACCGAAGGTAGTCAGTAAAGTACAGTGATCCGT < 41bp 0.868650867827509 0.555107776090639 0.8779745 0.25651997 prediction 0.627086183473739 Functional Loss - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57731626 chr15:57731629 stopgain 0.059 0 24 hm5C_associated_SNPs_52758 0 0 0 0 0 cytosol 0.500231643827599 0.500231643921096 0.755949 0 hm5C_site_48110 DeepMRMD:0.755949;iRNA_m5C:0 48111 chr15 43690301 43690301 1 + G T LUSC 43690299 + 43690279 43690319 41 TCCCCGGGAAGCCCCTGCATCTGGCTGGGCAGCCCTAGGTC TCCCCGGGAAGCCCCTGCATCTTGCTGGGCAGCCCTAGGTC < 41bp 0.820633542851538 0.5071041896241 0.28508958 0.07668531 prediction 0.627058706454876 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690299 chr15:43690301 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_52759 0 0 1 0 3 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48111 DeepMRMD:0;iRNA_m5C:0 48112 chr10 23399200 23399200 1 + G T LUAD 23399197 + 23399177 23399217 41 AGTGGGATCTACCTGAATAACAAGGAAGCAGGAATGTATCA AGTGGGATCTACCTGAATAACAATGAAGCAGGAATGTATCA < 41bp 0.813522983021594 0.445674888362908 0.5626245 0.07886279 prediction 0.627045966043187 Functional Loss - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23399197 chr10:23399200 nonsynonymous SNV 0.800 1 24 hm5C_associated_SNPs_52760 0 0 1 0 2 Endoplasmic reticulum 0.500232715525545 0.500231644150838 0.125249 2.14274941523485e-06 hm5C_site_48112 DeepMRMD:0.125249;iRNA_m5C:2.14274941523485e-06 48113 chr6 3850460 3850460 1 + G T LUSC 3850457 + 3850437 3850477 41 CCGACGCGGCCGAGGCCAGGCGCGCCGGAAACCTGGGCAAG CCGACGCGGCCGAGGCCAGGCGCTCCGGAAACCTGGGCAAG < 41bp 0.813503815319001 0.439643854551799 0.43466946 0.51166296 prediction 0.627007630638001 Functional Loss - FAM50B ENSG00000145945 CDS Human protein_coding chr6:3850457 chr6:3850460 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_52761 0 0 0 0 0 exosome 0.500231643906558 0.500231643921089 0 0 hm5C_site_48113 DeepMRMD:0;iRNA_m5C:0 48114 chr13 99853498 99853498 1 + G T rs143484553 99853495 + 99853475 99853515 41 TGGGCAGGTGCCCTGGTGTTCTCGTGGGCCGGCCCCAGGCC TGGGCAGGTGCCCTGGTGTTCTCTTGGGCCGGCCCCAGGCC < 41bp 0.853753095437669 0.540266281360864 0.56253344 0.71064335 prediction 0.626973628153611 Functional Loss - UBAC2 ENSG00000134882 UTR5 Human protein_coding chr13:99853495 chr13:99853498 . . 0 24 hm5C_associated_SNPs_52762 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_48114 DeepMRMD:0;iRNA_m5C:0 48115 chr2 177036543 177036543 1 + G T LUSC 177036540 + 177036520 177036560 41 CTCGGCGGCGCCGCTGGCCACGTGGCCTACTCCGGCCAGCT CTCGGCGGCGCCGCTGGCCACGTTGCCTACTCCGGCCAGCT < 41bp 0.813478494476063 0.44517371719745 0.79013956 0.18553221 prediction 0.626956988952127 Functional Loss - HOXD3 ENSG00000128652 CDS Human protein_coding chr2:177036540 chr2:177036543 synonymous SNV . 0 24 hm5C_associated_SNPs_52763 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.58027912 0 hm5C_site_48115 DeepMRMD:0.58027912;iRNA_m5C:0 48116 chr17 39411944 39411944 1 + A C rs539568748 39411940 + 39411920 39411960 41 AGCTGTGGGTCCAGCTGTGGCCAGAGCAGCTCCTGTGCACC AGCTGTGGGTCCAGCTGTGGCCAGCGCAGCTCCTGTGCACC < 41bp 0.813474072660149 0.458850640653665 0.8993375 0.47820592 prediction 0.626948145320297 Functional Loss - KRTAP9-9 ENSG00000198083 CDS Human protein_coding chr17:39411940 chr17:39411944 nonsynonymous SNV 0.021 1 25 hm5C_associated_SNPs_52764 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.798675 0 hm5C_site_48116 DeepMRMD:0.798675;iRNA_m5C:0 48117 chr11 61735897 61735897 1 + G T rs183128980 61735894 + 61735874 61735914 41 TTCGCACCCAAGGGACACATCTCGGGTTAGAAAGGAGAAAC TTCGCACCCAAGGGACACATCTCTGGTTAGAAAGGAGAAAC < 41bp 0.813463490090147 0.458288630217609 0.52512264 0.2298038 prediction 0.626926980180293 Functional Loss - FTH1 ENSG00000269089 CDS Human other chr11:61735894 chr11:61735897 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_52765 0 0 0 0 0 Cytosol 0.500231643921095 0.500231640022208 0.0502452799999999 7.79777420412131e-09 hm5C_site_48117 DeepMRMD:0.0502452799999999;iRNA_m5C:7.79777420412131e-09 48118 chr16 24366171 24366171 1 + A T OV 24366167 + 24366147 24366187 41 TCCGCAGGAGCTGTGAGGGCCTCCAGTGTCTTCCCCATCCT TCCGCAGGAGCTGTGAGGGCCTCCTGTGTCTTCCCCATCCT < 41bp 0.813462270406403 0.494857186324691 0.95268005 0.19874668 prediction 0.626924540812807 Functional Loss - CACNG3 ENSG00000006116 CDS Human protein_coding chr16:24366167 chr16:24366171 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_52766 0 0 0 0 1 nucleus 0.500231651416617 0.500231644138492 0.9053601 1.4556249539055e-08 hm5C_site_48118 DeepMRMD:0.9053601;iRNA_m5C:1.4556249539055e-08 48119 chr12 113871969 113871969 1 + G T UCEC 113871966 + 113871946 113871986 41 ACGAGGCCAATCTGAGGGCGCAAGAGTTGGCCAAGAGGGAC ACGAGGCCAATCTGAGGGCGCAATAGTTGGCCAAGAGGGAC < 41bp 0.876689037978929 0.56324219493692 0.8948666 0.7449511 prediction 0.626893686084019 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871966 chr12:113871969 stopgain 0.512 0 24 hm5C_associated_SNPs_52767 0 0 1 0 2 Nucleus 0.500231643910939 0.500231643921094 0.299831 0 hm5C_site_48119 DeepMRMD:0.299831;iRNA_m5C:0 48120 chr7 98256508 98256508 1 + G T LIHC 98256506 + 98256486 98256526 41 CTGCCCCTGTTTGTCAGTGACGGCAAGTGGCACCACATCTG CTGCCCCTGTTTGTCAGTGACGTCAAGTGGCACCACATCTG < 41bp 0.82738392324546 0.513951873524263 0.35050443 0.16462126 prediction 0.626864099442393 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98256506 chr7:98256508 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_52768 0 0 1 0 1 exosome 0.500231640350309 0.500197692807836 0 6.7895084945091e-05 hm5C_site_48120 DeepMRMD:0;iRNA_m5C:6.7895084945091e-05 48121 chr1 35223913 35223913 1 + A C rs28695349 35223909 + 35223889 35223929 41 AGCCAGTTCCTAGTCCTCAACTCCAGCCACCTGCCCCAGCT AGCCAGTTCCTAGTCCTCAACTCCCGCCACCTGCCCCAGCT < 41bp 0.813426777842416 0.466738391523264 0.9417156 0.37640652 prediction 0.626853555684833 Functional Loss - GJB5 ENSG00000189280 UTR3 Human protein_coding chr1:35223909 chr1:35223913 . . 0 25 hm5C_associated_SNPs_52769 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.8834312 0 hm5C_site_48121 DeepMRMD:0.8834312;iRNA_m5C:0 48122 chr5 68840857 68840857 1 + A C UCEC 68840853 + 68840833 68840873 41 AGCACCTGCAAAGGGAAGAGCAGGAAGGTCAAAGAGAACAG AGCACCTGCAAAGGGAAGAGCAGGCAGGTCAAAGAGAACAG < 41bp 0.813426216693475 0.431278102551709 0.2715878 0.2203803 prediction 0.626852433386951 Functional Loss - OCLN ENSG00000197822 CDS Human protein_coding chr5:68840853 chr5:68840857 synonymous SNV . 0 25 hm5C_associated_SNPs_52770 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921096 0 0 hm5C_site_48122 DeepMRMD:0;iRNA_m5C:0 48123 chr11 5776338 5776338 1 + A C rs139988106 5776334 + 5776314 5776354 41 GGGTGCTTATGCTTATGGCCCTGGATCGCTATGTGGCCATC GGGTGCTTATGCTTATGGCCCTGGCTCGCTATGTGGCCATC < 41bp 0.87579922584323 0.562374888821558 0.33780977 0.26253682 prediction 0.626848674043344 Functional Loss - OR52N4 ENSG00000181074 CDS Human protein_coding chr11:5776334 chr11:5776338 nonsynonymous SNV 0.822 4 25 hm5C_associated_SNPs_52771 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_48123 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 48124 chr7 150094613 150094613 1 + G T PAAD 150094610 + 150094590 150094630 41 CACTGTGGCCGCGGCTTCCGCCAGAAGCAGCACCTGCTCAA CACTGTGGCCGCGGCTTCCGCCATAAGCAGCACCTGCTCAA < 41bp 0.86846054637894 0.555041216461715 0.8915205 0.4459703 prediction 0.626838659834449 Functional Loss - ZNF775 ENSG00000196456 CDS Human protein_coding chr7:150094610 chr7:150094613 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52772 0 0 1 0 0 Cytosol 0.500231655672022 0.500231643922183 0.783041 2.34996779813201e-08 hm5C_site_48124 DeepMRMD:0.783041;iRNA_m5C:2.34996779813201e-08 48125 chr22 30823252 30823252 1 + G T SARC 30823249 + 30823229 30823269 41 TCTAGCCTCTGTGGCCATTCCGGGCTTCACCATCAACCGCG TCTAGCCTCTGTGGCCATTCCGGTCTTCACCATCAACCGCG < 41bp 0.813410100110822 0.440828063007954 0.9311988 0.8678085 prediction 0.626820200221643 Functional Loss - MTFP1 ENSG00000242114;ENSG00000249590 CDS Human other chr22:30823249 chr22:30823252 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_52773 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921116 0.1267806 0 hm5C_site_48125 DeepMRMD:0.1267806;iRNA_m5C:0 48126 chr2 132021792 132021792 1 + G T UCEC 132021789 + 132021769 132021809 41 AGAAGCTGTGCTATGTTGCCCTGGACTTCGAGCAGGAGATG AGAAGCTGTGCTATGTTGCCCTGTACTTCGAGCAGGAGATG < 41bp 0.813370596242567 0.46332823728357 0.08798796 0.07056022 prediction 0.626741192485134 Functional Loss - POTEE ENSG00000188219 CDS Human protein_coding chr2:132021789 chr2:132021792 nonsynonymous SNV 0.139 3 24 hm5C_associated_SNPs_52774 0 0 1 0 0 chromatin 0.500236366935698 0.500231655378137 0 9.42311512308613e-06 hm5C_site_48126 DeepMRMD:0;iRNA_m5C:9.42311512308613e-06 48127 chr3 169540353 169540353 1 + A C COAD 169540349 + 169540329 169540369 41 TCGGACACCTGACGGGGCTGCAGAAGTTCTATATGGCTTCT TCGGACACCTGACGGGGCTGCAGACGTTCTATATGGCTTCT < 41bp 0.813345646468275 0.434050845429978 0.5190138 0.44755822 prediction 0.62669129293655 Functional Loss - LRRIQ4 ENSG00000188306 CDS Human protein_coding chr3:169540349 chr3:169540353 nonsynonymous SNV 0.039 4 25 hm5C_associated_SNPs_52775 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0380275999999999 0 hm5C_site_48127 DeepMRMD:0.0380275999999999;iRNA_m5C:0 48128 chrX 47044965 47044965 1 + G T ESCA 47044963 + 47044943 47044983 41 CAGAAGCTGGCCTGTCTGCTCTGCCGACGCCAGTTCCCCAG CAGAAGCTGGCCTGTCTGCTCTTCCGACGCCAGTTCCCCAG < 41bp 0.81333844991383 0.496600295580428 0.3915467 0.22491726 prediction 0.62667689982766 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47044963 chrX:47044965 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_52776 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48128 DeepMRMD:0;iRNA_m5C:0 48129 chr17 40695718 40695718 1 + G T LUAD 40695715 + 40695695 40695735 41 CTACGACCTGCTGGACCTCACTCGGCAGGCAGTGCAGGAGC CTACGACCTGCTGGACCTCACTCTGCAGGCAGTGCAGGAGC < 41bp 0.875493832064788 0.562163614263788 0.19195253 0.22624516 prediction 0.626660435602 Functional Loss - NAGLU ENSG00000108784 CDS Human protein_coding chr17:40695715 chr17:40695718 nonsynonymous SNV 0.809 5 24 hm5C_associated_SNPs_52777 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231647241928 0 0 hm5C_site_48129 DeepMRMD:0;iRNA_m5C:0 48130 chr4 81952603 81952603 1 + G T UCEC 81952600 + 81952580 81952620 41 TCCGAGCTGCAGCCGCAAGACAAGGTCTCTGAACACATGCT TCCGAGCTGCAGCCGCAAGACAATGTCTCTGAACACATGCT < 41bp 0.813326457823923 0.456203999036479 0.30563873 0.06744981 prediction 0.626652915647845 Functional Loss - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81952600 chr4:81952603 nonsynonymous SNV 0.320 0 24 hm5C_associated_SNPs_52778 0 0 0 0 0 Nucleus 0.500231643921532 0.500231626685947 0 3.44711708066825e-08 hm5C_site_48130 DeepMRMD:0;iRNA_m5C:3.44711708066825e-08 48131 chr8 70515555 70515555 1 + G T LUSC 70515553 + 70515533 70515573 41 GACCCAGAAAAGCCAGGTAACAGGTGTGTCATTGTTCCTCC GACCCAGAAAAGCCAGGTAACATGTGTGTCATTGTTCCTCC < 41bp 0.813324511406957 0.493186390039745 0.9036677 0.36679256 prediction 0.626649022813914 Functional Loss - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70515553 chr8:70515555 nonsynonymous SNV 0.994 5 23 hm5C_associated_SNPs_52779 0 0 0 1 1 Nucleus 0.500231643921093 0.500231637313377 0.8073354 1.32154309717691e-08 hm5C_site_48131 DeepMRMD:0.8073354;iRNA_m5C:1.32154309717691e-08 48132 chr1 8938982 8938982 1 + T G rs29000585 8938986 - 8938966 8939006 41 GGCCAGAGTTTCGCCCGCACCACTACAGGGCCGCTGGGGAG GGCCAGAGTTTCGCCCGCACCACTCCAGGGCCGCTGGGGAG < 41bp 0.851908782146242 0.538585295606036 0.46836513 0.7836137 prediction 0.626646973080412 Functional Loss - ENO1-AS1 ENSG00000230679 ncRNA_exonic Human antisense chr1:8938986 chr1:8938982 . . 0 25 hm5C_associated_SNPs_52780 0 0 0 0 0 unknown 0.500231643848432 0.500231643948341 0 0 hm5C_site_48132 DeepMRMD:0;iRNA_m5C:0 48133 chr19 56369147 56369147 1 + G T STAD 56369144 + 56369124 56369164 41 ACTTTGAGGAGGAAGTCAAGCAAGAAGAATGTGACCATTTG ACTTTGAGGAGGAAGTCAAGCAATAAGAATGTGACCATTTG < 41bp 0.871538423418104 0.558224955267721 0.30935413 0.1775603 prediction 0.626626936300766 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56369144 chr19:56369147 stopgain 0.002 0 24 hm5C_associated_SNPs_52781 0 0 0 0 0 exosome 0.500265604400393 0.50035910918057 0 0 hm5C_site_48133 DeepMRMD:0;iRNA_m5C:0 48134 chr17 7604788 7604788 1 + G T SARC 7604786 + 7604766 7604806 41 GTCTCTCTCAGCGTGGCCAGCAGCAGCCGGGAGAACCCGAT GTCTCTCTCAGCGTGGCCAGCATCAGCCGGGAGAACCCGAT < 41bp 0.813290419244561 0.488738262530269 0.46680474 0.07982767 prediction 0.626580838489123 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604786 chr17:7604788 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52782 0 0 0 0 3 Ribosome 0.500231639568228 0.500231561528467 0 1.5607952219554e-07 hm5C_site_48134 DeepMRMD:0;iRNA_m5C:1.5607952219554e-07 48135 chr17 48745134 48745134 1 + G T STAD 48745132 + 48745112 48745152 41 CTTCCTGGTGAGGCTTGGCACAGGGCTGGGTCCCTGCCTCC CTTCCTGGTGAGGCTTGGCACATGGCTGGGTCCCTGCCTCC < 41bp 0.843710325498785 0.530459563279094 0.931139 0.83528745 prediction 0.626501524439382 Functional Loss - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48745132 chr17:48745134 nonsynonymous SNV 0.004 2 23 hm5C_associated_SNPs_52783 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643925292 0.1917031 0 hm5C_site_48135 DeepMRMD:0.1917031;iRNA_m5C:0 48136 chrX 84502625 84502625 1 + G T HNSC 84502622 + 84502602 84502642 41 TGGATTGCACACGCCAGACTCTAGAATGGCCCATACCATGA TGGATTGCACACGCCAGACTCTATAATGGCCCATACCATGA < 41bp 0.851911939518644 0.538662453259166 0.28860062 0.33330262 prediction 0.626498972518956 Functional Loss - ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502622 chrX:84502625 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_52784 0 0 1 0 2 cytosol 0.500258514181051 0.500231643921054 0 5.37405199936281e-05 hm5C_site_48136 DeepMRMD:0;iRNA_m5C:5.37405199936281e-05 48137 chrX 591803 591803 1 + G T LUSC 591801 + 591781 591821 41 GGACGTCGGATTCCAGCCTCCAGGACATCACGGAGGGCGGC GGACGTCGGATTCCAGCCTCCATGACATCACGGAGGGCGGC < 41bp 0.813240186050563 0.483564590859343 0.5524657 0.05454138 prediction 0.626480372101125 Functional Loss - SHOX ENSG00000185960 CDS Human protein_coding chrX:591801 chrX:591803 nonsynonymous SNV 0.683 1 23 hm5C_associated_SNPs_52785 0 0 0 0 0 Nucleus 0.50023164973401 0.5002316439659 0.1049314 1.1536220645425e-08 hm5C_site_48137 DeepMRMD:0.1049314;iRNA_m5C:1.1536220645425e-08 48138 chr16 88039714 88039714 1 + G T LUAD 88039712 + 88039692 88039732 41 TTAGCGCTGTGCCTGGGCGTCGGCAGAACACCATTGTGGTG TTAGCGCTGTGCCTGGGCGTCGTCAGAACACCATTGTGGTG < 41bp 0.8132262712546 0.493186793751024 0.87073624 0.32371962 prediction 0.6264525425092 Functional Loss - BANP ENSG00000172530 CDS Human protein_coding chr16:88039712 chr16:88039714 synonymous SNV . 0 23 hm5C_associated_SNPs_52786 0 0 1 0 1 Cytosol 0.500231643920718 0.50023175018457 0.74147248 0 hm5C_site_48138 DeepMRMD:0.74147248;iRNA_m5C:0 48139 chrX 140984793 140984793 1 + G T COAD 140984790 + 140984770 140984810 41 AGAGTCCTCCCCAGAGTCCTCTAGACTCCTGCTCATCCCCT AGAGTCCTCCCCAGAGTCCTCTATACTCCTGCTCATCCCCT < 41bp 0.813223145335243 0.43547567927448 0.3349052 0.12595803 prediction 0.626446290670486 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140984790 chrX:140984793 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_52787 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0 4.44089209850063e-16 hm5C_site_48139 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 48140 chr22 23501399 23501399 1 + G T STAD 23501397 + 23501377 23501417 41 GCAGACGCTGTGCACCTGGCCAGGGAGATGCAGGCCGAGTA GCAGACGCTGTGCACCTGGCCATGGAGATGCAGGCCGAGTA < 41bp 0.844106412414033 0.530883954804359 0.87726957 0.30995452 prediction 0.626444915219348 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23501397 chr22:23501399 nonsynonymous SNV 0.972 0 23 hm5C_associated_SNPs_52788 0 0 0 0 2 Nucleus 0.500231643582622 0.500231643921108 0.75453914 0 hm5C_site_48140 DeepMRMD:0.75453914;iRNA_m5C:0 48141 chr2 176987764 176987764 1 + G T STAD 176987762 + 176987742 176987782 41 GCCCTCCCAGCCCCCGGCAGCGGCGGCGATGAGCGGCCTCT GCCCTCCCAGCCCCCGGCAGCGTCGGCGATGAGCGGCCTCT < 41bp 0.813202484783065 0.492114676221079 0.89290845 0.5461778 prediction 0.62640496956613 Functional Loss - HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176987762 chr2:176987764 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_52789 0 0 0 0 0 Endoplasmic reticulum 0.500231675916929 0.500232117469026 0.6934613 0 hm5C_site_48141 DeepMRMD:0.6934613;iRNA_m5C:0 48142 chr7 142962282 142962282 1 + G T UCEC 142962280 + 142962260 142962300 41 GGTCATGATCCTGCCCCCGCCCGGGGGATCTACTGTCCTCC GGTCATGATCCTGCCCCCGCCCTGGGGATCTACTGTCCTCC < 41bp 0.813197717542602 0.485329002382332 0.9404298 0.13355106 prediction 0.626395435085205 Functional Loss - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142962280 chr7:142962282 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52790 0 0 1 0 1 Endoplasmic reticulum 0.500231643944767 0.500231643921016 0.8808596 4.7502002331612e-11 hm5C_site_48142 DeepMRMD:0.8808596;iRNA_m5C:4.7502002331612e-11 48143 chr5 140564055 140564055 1 + G T LUAD 140564052 + 140564032 140564072 41 GCGACGCAGCCAAGCAGAGGCTGGTGGTGCTGGTCAAGGAC GCGACGCAGCCAAGCAGAGGCTGTTGGTGCTGGTCAAGGAC < 41bp 0.813197216571777 0.450849809693217 0.26511967 0.082442194 prediction 0.626394433143554 Functional Loss - PCDHB16 ENSG00000196963 CDS Human other chr5:140564052 chr5:140564055 nonsynonymous SNV 0.737 0 24 hm5C_associated_SNPs_52791 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_48143 DeepMRMD:0;iRNA_m5C:0 48144 chr6 155451281 155451281 1 + G T LUAD 155451279 + 155451259 155451299 41 AACTGTACAAAGATGCCAACCTGGGGAGCCTCTCCCCCTCA AACTGTACAAAGATGCCAACCTTGGGAGCCTCTCCCCCTCA < 41bp 0.81600800858545 0.502822216964772 0.88156164 0.02234444 prediction 0.626371583241357 Functional Loss - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155451279 chr6:155451281 synonymous SNV . 0 23 hm5C_associated_SNPs_52792 0 0 0 0 0 Cytosol 0.500231643568344 0.500231643921087 0.76312328 0 hm5C_site_48144 DeepMRMD:0.76312328;iRNA_m5C:0 48145 chr18 51888188 51888188 1 + G T UCEC 51888185 + 51888165 51888205 41 CACCGAACGAGCAAGAAAAACAAGAAATGCCGTGGAAGACT CACCGAACGAGCAAGAAAAACAATAAATGCCGTGGAAGACT < 41bp 0.813179734653599 0.470476451473872 0.904467 0.9068351 prediction 0.626359469307199 Functional Loss - C18orf54 ENSG00000166845 CDS Human protein_coding chr18:51888185 chr18:51888188 nonsynonymous SNV 0.390 1 24 hm5C_associated_SNPs_52793 0 0 1 0 0 chromatin 0.500231643920131 0.500231643921092 0 0 hm5C_site_48145 DeepMRMD:0;iRNA_m5C:0 48146 chr20 30605623 30605623 1 + G T UCEC 30605620 + 30605600 30605640 41 CAGTTCCTGGGCCACCTTACCTGGGTGACTTCCTCACTGAA CAGTTCCTGGGCCACCTTACCTGTGTGACTTCCTCACTGAA < 41bp 0.813178295319542 0.42767169952434 0.9469935 0.3575557 prediction 0.626356590639084 Functional Loss - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30605620 chr20:30605623 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52794 0 0 0 0 1 exosome 0.500230986057235 0.50023164397275 0.893987 0 hm5C_site_48146 DeepMRMD:0.893987;iRNA_m5C:0 48147 chrX 1531871 1531871 1 + A C rs753250045 1531867 + 1531847 1531887 41 AGAGAAGAGAGGGGTGTGGGCGGGAATGGGTCTTCCTGAAG AGAGAAGAGAGGGGTGTGGGCGGGCATGGGTCTTCCTGAAG < 41bp 0.857903701264808 0.544728090773401 0.9060981 0.8905053 prediction 0.626351220982814 Functional Loss - ASMTL-AS1 ENSG00000236017 ncRNA_exonic Human antisense chrX:1531867 chrX:1531871 . . 0 25 hm5C_associated_SNPs_52795 0 0 1 0 0 unknown 0.500231643967552 0.500231935738235 0.0311855999999999 0 hm5C_site_48147 DeepMRMD:0.0311855999999999;iRNA_m5C:0 48148 chr2 190531026 190531026 1 + G T CESC 190531023 + 190531003 190531043 41 TTTTCTGCTCACGTCCTACACTTGAGGGGTGTTTTGACTAC TTTTCTGCTCACGTCCTACACTTTAGGGGTGTTTTGACTAC < 41bp 0.858693412964965 0.545540652535098 0.07515353 0.034983307 prediction 0.626305520859734 Functional Loss - ASNSD1 ENSG00000138381 CDS Human protein_coding chr2:190531023 chr2:190531026 nonsynonymous SNV 0.741 2 24 hm5C_associated_SNPs_52796 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0 1.11022302462516e-15 hm5C_site_48148 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 48149 chr17 48539874 48539874 1 + G T PAAD 48539872 + 48539852 48539892 41 TGGCGGCTGGCAGCACACGGCAGCATCTGGACCAGCTCCAA TGGCGGCTGGCAGCACACGGCATCATCTGGACCAGCTCCAA < 41bp 0.832807377621461 0.519691809439235 0.18527395 0.043175697 prediction 0.626231136364452 Functional Loss - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48539872 chr17:48539874 nonsynonymous SNV 0.524 2 23 hm5C_associated_SNPs_52797 0 0 1 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643926039 0 0 hm5C_site_48149 DeepMRMD:0;iRNA_m5C:0 48150 chr3 11301009 11301009 1 + G T LUSC 11301006 + 11300986 11301026 41 TGCTCATGTCCAAGTGGTCACTGGGCCGTCCTCTCTGCCTC TGCTCATGTCCAAGTGGTCACTGTGCCGTCCTCTCTGCCTC < 41bp 0.813113754126533 0.441604599386764 0.8080502 0.20501193 prediction 0.626227508253066 Functional Loss - HRH1 ENSG00000196639 CDS Human protein_coding chr3:11301006 chr3:11301009 nonsynonymous SNV 0.388 4 24 hm5C_associated_SNPs_52798 0 0 0 0 0 nucleus 0.500231634610983 0.500231648050901 0.6161004 0 hm5C_site_48150 DeepMRMD:0.6161004;iRNA_m5C:0 48151 chr5 131705526 131705526 1 + G T rs13180169 131705523 + 131705503 131705543 41 GACCAAGGCGGCGGTGTCAGCTCGCGAGCCTACCCTCCGCG GACCAAGGCGGCGGTGTCAGCTCTCGAGCCTACCCTCCGCG < 41bp 0.829168642262555 0.516082413032628 0.33633563 0.16149434 prediction 0.626172458459854 Functional Loss - MIR3936HG ENSG00000233006 ncRNA_intronic Human processed_transcript chr5:131705523 chr5:131705526 . . 0 24 hm5C_associated_SNPs_52799 1 0 1 0 0 unknown 0.500230746156153 0.500231644440766 0 0 hm5C_site_48151 DeepMRMD:0;iRNA_m5C:0 Renal carnitine transport defect Renal carnitine transport defect 48152 chr19 30934506 30934506 1 + G T LUAD 30934504 + 30934484 30934524 41 CCTGTGCCTTGGAGTGTCTTCGGCGGAGCCGGAAGCTGAGC CCTGTGCCTTGGAGTGTCTTCGTCGGAGCCGGAAGCTGAGC < 41bp 0.813078353112919 0.493924541969651 0.9131497 0.5053367 prediction 0.626156706225838 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934504 chr19:30934506 nonsynonymous SNV 0.506 1 23 hm5C_associated_SNPs_52800 0 0 1 0 1 exosome 0.500231643885185 0.500231644065302 0.815626 0 hm5C_site_48152 DeepMRMD:0.815626;iRNA_m5C:0 48153 chr8 22147806 22147806 1 + G T ACC 22147804 + 22147784 22147824 41 GGACAGATGGAGGGCTCTTCCTGCTAGCTGATGTCTCCCAT GGACAGATGGAGGGCTCTTCCTTCTAGCTGATGTCTCCCAT < 41bp 0.813076457056263 0.498163687328087 0.1954248 0.24694386 prediction 0.626152914112527 Functional Loss - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22147804 chr8:22147806 synonymous SNV . 0 23 hm5C_associated_SNPs_52801 0 0 0 0 2 nucleus 0.500231643923809 0.500231643921092 0 5.43298739330567e-12 hm5C_site_48153 DeepMRMD:0;iRNA_m5C:5.43298739330567e-12 48154 chr16 57714214 57714214 1 + G T LUAD 57714211 + 57714191 57714231 41 TGGTCTTCTGAGGGCTGCTCCACGGAGGTCAGACCTGAGGG TGGTCTTCTGAGGGCTGCTCCACTGAGGTCAGACCTGAGGG < 41bp 0.813068164728418 0.426377042459156 0.7317311 0.20424733 prediction 0.626136329456835 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714211 chr16:57714214 synonymous SNV . 0 24 hm5C_associated_SNPs_52802 0 0 0 0 2 Nucleus 0.500231643918883 0.500231643937516 0.4634622 0 hm5C_site_48154 DeepMRMD:0.4634622;iRNA_m5C:0 48155 chr18 7231754 7231754 1 + G T LUSC 7231752 + 7231732 7231772 41 AAAACATCGCTGAGAGCATCCAGCACCTGGCCAGCCTGCAG AAAACATCGCTGAGAGCATCCATCACCTGGCCAGCCTGCAG < 41bp 0.814536244872458 0.501472902922228 0.14266405 0.04178825 prediction 0.626126683900462 Functional Loss - LRRC30 ENSG00000206422 CDS Human protein_coding chr18:7231752 chr18:7231754 nonsynonymous SNV 0.987 3 23 hm5C_associated_SNPs_52803 0 0 0 0 0 unknown 0.500233192936748 0.500287810503698 0 0 hm5C_site_48155 DeepMRMD:0;iRNA_m5C:0 48156 chr9 98638319 98638319 1 + G T ESCA 98638317 + 98638297 98638337 41 GGCTCGGCCCCTCCCCCTGGCCGGATGGATCCGTCGGCGCC GGCTCGGCCCCTCCCCCTGGCCTGATGGATCCGTCGGCGCC < 41bp 0.821383340724226 0.508325177495954 0.8210399 0.10597646 prediction 0.626116326456545 Functional Loss - ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98638317 chr9:98638319 nonsynonymous SNV 0.052 1 23 hm5C_associated_SNPs_52804 0 0 0 0 1 Nucleus 0.500232337584994 0.50023164392127 0.6420798 1.38732744869863e-06 hm5C_site_48156 DeepMRMD:0.6420798;iRNA_m5C:1.38732744869863e-06 48157 chr9 84609625 84609625 1 + G T LUSC 84609622 + 84609602 84609642 41 GGAAAGACACTAGGGAGTTCCTAGAAGAGAAGCTGGGGCAT GGAAAGACACTAGGGAGTTCCTATAAGAGAAGCTGGGGCAT < 41bp 0.813051449430608 0.462439729223343 0.63518155 0.90453255 prediction 0.626102898861216 Functional Loss - SPATA31D1 ENSG00000214929 CDS Human protein_coding chr9:84609622 chr9:84609625 stopgain 0.000 0 24 hm5C_associated_SNPs_52805 0 0 0 0 0 exosome 0.500231643921094 0.500231643921092 0 2.88657986402541e-15 hm5C_site_48157 DeepMRMD:0;iRNA_m5C:2.88657986402541e-15 48158 chr4 189061066 189061066 1 + G T COAD 189061063 + 189061043 189061083 41 GGTGGAAGCGCCTTCGTAGCCCAGAGCCATGGTGCAAACAG GGTGGAAGCGCCTTCGTAGCCCATAGCCATGGTGCAAACAG < 41bp 0.871758517398991 0.558721847867607 0.23458695 0.18008134 prediction 0.626073339062766 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189061063 chr4:189061066 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_52806 0 0 0 0 0 nucleus 0.500214394421464 0.500231647725365 0 0 hm5C_site_48158 DeepMRMD:0;iRNA_m5C:0 48159 chr5 639258 639258 1 + G T LUSC 639256 + 639236 639276 41 GAAGAAGACGGCCCTGCAGGCGGCGCTCCTGGAGACGCTCT GAAGAAGACGGCCCTGCAGGCGTCGCTCCTGGAGACGCTCT < 41bp 0.813033158863193 0.490080931944598 0.5099927 0.15780729 prediction 0.626066317726386 Functional Loss - CEP72 ENSG00000112877 CDS Human protein_coding chr5:639256 chr5:639258 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52807 0 0 0 0 1 chromatin 0.500231643931767 0.500234765314328 0.0199853999999999 0 hm5C_site_48159 DeepMRMD:0.0199853999999999;iRNA_m5C:0 48160 chr6 44144372 44144372 1 + G T LUAD 44144369 + 44144349 44144389 41 ATCCAGATGCAGCTGCTGCACAAGACGGAGGACGGGGAGTT ATCCAGATGCAGCTGCTGCACAATACGGAGGACGGGGAGTT < 41bp 0.88178219861271 0.568758431612864 0.2149702 0.09320101 prediction 0.626047533999693 Functional Loss - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44144369 chr6:44144372 nonsynonymous SNV 0.024 1 24 hm5C_associated_SNPs_52808 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48160 DeepMRMD:0;iRNA_m5C:0 48161 chr9 97054749 97054749 1 + G T LUAD 97054746 + 97054726 97054766 41 ACTACAGCCATCTGGTCTCCCTGGGTAAGGCTGGCCTGTTT ACTACAGCCATCTGGTCTCCCTGTGTAAGGCTGGCCTGTTT < 41bp 0.875680019100798 0.562660343139287 0.5276701 0.07590103 prediction 0.626039351923023 Functional Loss - ZNF169 ENSG00000175787 CDS Human protein_coding chr9:97054746 chr9:97054749 stopgain 0.198 0 24 hm5C_associated_SNPs_52809 0 0 0 0 1 Cytosol 0.50023164390885 0.500229393577744 0.0553402000000001 4.5006622113597e-06 hm5C_site_48161 DeepMRMD:0.0553402000000001;iRNA_m5C:4.5006622113597e-06 48162 chrX 54836184 54836184 1 + G T BRCA 54836181 + 54836161 54836201 41 GCTTCAGAAAAGGACAGTAGCTCGATGATGCAGACTCTGTT GCTTCAGAAAAGGACAGTAGCTCTATGATGCAGACTCTGTT < 41bp 0.868937251139873 0.55592429095041 0.3308182 0.9358069 prediction 0.626025920378927 Functional Loss - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54836181 chrX:54836184 synonymous SNV . 0 24 hm5C_associated_SNPs_52810 0 0 1 0 0 chromatin 0.500229913684061 0.500231643115517 0 0 hm5C_site_48162 DeepMRMD:0;iRNA_m5C:0 48163 chr1 159779996 159779996 1 + G T BLCA 159779993 + 159779973 159780013 41 CTTCTGGTTTATGTGAGATCCTGGAGAAAAGCTGGTCAGTA CTTCTGGTTTATGTGAGATCCTGTAGAAAAGCTGGTCAGTA < 41bp 0.863849805593724 0.55083970603521 0.8973311 0.34573734 prediction 0.626020199117027 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159779993 chr1:159779996 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_52811 0 0 0 0 1 exosome 0.500129843468328 0.500231646150664 0.7946622 0 hm5C_site_48163 DeepMRMD:0.7946622;iRNA_m5C:0 48164 chr18 61652456 61652456 1 + G T LUAD 61652453 + 61652433 61652473 41 TGAGCATGGTCATTCTGCTTCCCGATGACAACACGGACCTC TGAGCATGGTCATTCTGCTTCCCTATGACAACACGGACCTC < 41bp 0.812993380568283 0.445112175455064 0.30876267 0.18356675 prediction 0.625986761136566 Functional Loss - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61652453 chr18:61652456 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_52812 0 0 0 0 1 nucleus 0.500231643921092 0.500231643911368 0 1.94482208115687e-11 hm5C_site_48164 DeepMRMD:0;iRNA_m5C:1.94482208115687e-11 48165 chr17 7579312 7579312 1 + C A ACC 7579315 - 7579295 7579335 41 ACAGCCAAGTCTGTGACTTGCACGGTCAGTTGCCCTGAGGG ACAGCCAAGTCTGTGACTTGCACTGTCAGTTGCCCTGAGGG < 41bp 0.81299058755366 0.479378092719021 0.29939675 0.07642937 prediction 0.625981175107319 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7579315 chr17:7579312 synonymous SNV . 0 24 hm5C_associated_SNPs_52813 1 0 1 0 0 Ribosome 0.500231643976257 0.500231643957256 0 3.80020459544994e-11 hm5C_site_48165 DeepMRMD:0;iRNA_m5C:3.80020459544994e-11 Li-Fraumeni syndrome Li-Fraumeni syndrome 48166 chr2 27016114 27016114 1 + G T LUAD 27016112 + 27016092 27016132 41 CAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTGAG CAAAGGATGTGCAACTGGCCCGTAGGATCCGGGGCCTTGAG < 41bp 0.812980260828918 0.494438244858288 0.8609494 0.30495822 prediction 0.625960521657836 Functional Loss - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016112 chr2:27016114 synonymous SNV . 0 23 hm5C_associated_SNPs_52814 0 0 1 1 1 Ribosome 0.500231643921092 0.500231643921093 0.7218988 0 hm5C_site_48166 DeepMRMD:0.7218988;iRNA_m5C:0 48167 chr7 134613549 134613549 1 + G T LUSC 134613547 + 134613527 134613567 41 GATGATGAAGAGGAGGCAGCCCGGGAACGGCGCCGCCGAGC GATGATGAAGAGGAGGCAGCCCTGGAACGGCGCCGCCGAGC < 41bp 0.812978528258887 0.499449640483458 0.891122 0.12076831 prediction 0.625957056517773 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134613547 chr7:134613549 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_52815 0 0 1 0 1 Ribosome 0.500231643935226 0.500231643920957 0.782244 2.85380608033847e-11 hm5C_site_48167 DeepMRMD:0.782244;iRNA_m5C:2.85380608033847e-11 48168 chr15 89169554 89169554 1 + G T SARC 89169552 + 89169532 89169572 41 AGAGAAGGAGCCGACAGCACCAGCGGTTCATGGCCCGGAAG AGAGAAGGAGCCGACAGCACCATCGGTTCATGGCCCGGAAG < 41bp 0.834009207491842 0.521034993917231 0.8872411 0.14418882 prediction 0.625948427149221 Functional Loss - AEN ENSG00000181026 CDS Human protein_coding chr15:89169552 chr15:89169554 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_52816 0 0 1 0 0 Ribosome 0.500231643921266 0.500231645151228 0.7744822 0 hm5C_site_48168 DeepMRMD:0.7744822;iRNA_m5C:0 48169 chrX 120182111 120182111 1 + G T UCEC 120182108 + 120182088 120182128 41 GCTGGTGTTAAGATCAATCCCAAGAACTATACCGAAAATGA GCTGGTGTTAAGATCAATCCCAATAACTATACCGAAAATGA < 41bp 0.812973555355372 0.452076218139975 0.4174372 0.2372435 prediction 0.625947110710743 Functional Loss - GLUD2 ENSG00000182890 CDS Human protein_coding chrX:120182108 chrX:120182111 nonsynonymous SNV 0.655 3 24 hm5C_associated_SNPs_52817 0 0 0 0 0 Ribosome 0.500231643921059 0.500231643921092 0 0 hm5C_site_48169 DeepMRMD:0;iRNA_m5C:0 48170 chr5 61602038 61602038 1 + A C rs181824384 61602034 + 61602014 61602054 41 GGGCGGTGCGGGCCCTCCCACTCTACCCCGCGCCGTCTCAC GGGCGGTGCGGGCCCTCCCACTCTCCCCCGCGCCGTCTCAC < 41bp 0.828377723483653 0.515407212035728 0.65666044 0.3119648 prediction 0.62594102289585 Functional Loss - KIF2A ENSG00000068796 UTR5 Human protein_coding chr5:61602034 chr5:61602038 . . 0 25 hm5C_associated_SNPs_52818 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643918466 0.31332088 5.25379739713117e-12 hm5C_site_48170 DeepMRMD:0.31332088;iRNA_m5C:5.25379739713117e-12 48171 chr4 40752840 40752840 1 + G T UCEC 40752837 + 40752817 40752857 41 TGCCCGAAAAAACGGGCTATCCGGACTCCGTTTATGTCATG TGCCCGAAAAAACGGGCTATCCGTACTCCGTTTATGTCATG < 41bp 0.812923615556214 0.443379777238327 0.7176856 0.17156678 prediction 0.625847231112427 Functional Loss - NSUN7 ENSG00000179299 CDS Human protein_coding chr4:40752837 chr4:40752840 nonsynonymous SNV 0.030 4 24 hm5C_associated_SNPs_52819 0 0 0 0 0 exosome 0.500231699865865 0.500231643921091 0.4353712 1.11889549403443e-07 hm5C_site_48171 DeepMRMD:0.4353712;iRNA_m5C:1.11889549403443e-07 48172 chr5 140480313 140480313 1 + G T LUAD 140480310 + 140480290 140480330 41 TTTTCTGGGAGGGTCTCTGGCTGGGTCCGAGTCAAGACGCT TTTTCTGGGAGGGTCTCTGGCTGTGTCCGAGTCAAGACGCT < 41bp 0.871496038962115 0.55857550295571 0.5902252 0.11475438 prediction 0.625841072012809 Functional Loss - PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140480310 chr5:140480313 nonsynonymous SNV 0.054 0 24 hm5C_associated_SNPs_52820 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0.1804504 0 hm5C_site_48172 DeepMRMD:0.1804504;iRNA_m5C:0 48173 chr19 53761993 53761993 1 + G T LUAD 53761990 + 53761970 53762010 41 TTACTTTAGGGGATACAAGCCAAGATCCACAGATTTGATTC TTACTTTAGGGGATACAAGCCAATATCCACAGATTTGATTC < 41bp 0.812918539656538 0.462731307453337 0.19312799 0.08426905 prediction 0.625837079313075 Functional Loss - VN1R2 ENSG00000196131 CDS Human protein_coding chr19:53761990 chr19:53761993 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_52821 0 0 0 0 0 unknown 0.500231643867415 0.500231643921221 0 0 hm5C_site_48173 DeepMRMD:0;iRNA_m5C:0 48174 chr2 178257707 178257707 1 + G T SARC 178257705 + 178257685 178257725 41 TGAGTGCAAAGCGCGGAGAGCCGCGTCGGCGGCCACGGCAG TGAGTGCAAAGCGCGGAGAGCCTCGTCGGCGGCCACGGCAG < 41bp 0.812918098141329 0.494238198127555 0.16211513 0.06132108 prediction 0.625836196282658 Functional Loss - AGPS ENSG00000018510 CDS Human protein_coding chr2:178257705 chr2:178257707 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_52822 0 0 1 0 1 Nucleus 0.500231643999828 0.500231644480232 0 0 hm5C_site_48174 DeepMRMD:0;iRNA_m5C:0 48175 chr12 68051350 68051350 1 + G T LUSC 68051347 + 68051327 68051367 41 CCCCACGATCACGTGGCTTACAGGTATGAGGTCCTCAAGGT CCCCACGATCACGTGGCTTACAGTTATGAGGTCCTCAAGGT < 41bp 0.812915046449187 0.445339339930578 0.54080164 0.14268264 prediction 0.625830092898374 Functional Loss - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68051347 chr12:68051350 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52823 0 0 1 0 0 Ribosome 0.500231643922556 0.500231643921093 0.0816032799999999 2.92699198212176e-12 hm5C_site_48175 DeepMRMD:0.0816032799999999;iRNA_m5C:2.92699198212176e-12 48176 chr7 120971935 120971935 1 + G T UCEC 120971932 + 120971912 120971952 41 TGTGGTTCAGCAGAAAGTTCCTAGATTTCCCCATCGGAAAC TGTGGTTCAGCAGAAAGTTCCTATATTTCCCCATCGGAAAC < 41bp 0.812914862974393 0.455305616018911 0.32782274 0.10188028 prediction 0.625829725948785 Functional Loss - WNT16 ENSG00000002745 CDS Human protein_coding chr7:120971932 chr7:120971935 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_52824 0 0 0 0 1 exosome 0.500231645260377 0.500231644046657 0 2.42744135903195e-09 hm5C_site_48176 DeepMRMD:0;iRNA_m5C:2.42744135903195e-09 48177 chr15 68434639 68434639 1 + G T LUSC 68434636 + 68434616 68434656 41 TGTCTCTTCTAGGGATATTTCTGGGACCAAATGTGACTTCA TGTCTCTTCTAGGGATATTTCTGTGACCAAATGTGACTTCA < 41bp 0.812913679775145 0.45498411161609 0.92164165 0.69067013 prediction 0.62582735955029 Functional Loss - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68434636 chr15:68434639 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52825 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643667775 0.46194304 5.0663584438837e-10 hm5C_site_48177 DeepMRMD:0.46194304;iRNA_m5C:5.0663584438837e-10 48178 chr11 55032434 55032434 1 + A C LUAD 55032430 + 55032410 55032450 41 AGGGAACTCACCTGCCCCATCTGCATGAACTACTTCATAGA AGGGAACTCACCTGCCCCATCTGCCTGAACTACTTCATAGA < 41bp 0.812910283329089 0.412101468144466 0.06743389 0.05700758 prediction 0.625820566658178 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55032430 chr11:55032434 nonsynonymous SNV 0.254 0 25 hm5C_associated_SNPs_52826 0 0 0 0 1 unknown 0.500231643921093 0.500231643921092 0 4.44089209850063e-16 hm5C_site_48178 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 48179 chr19 57132791 57132791 1 + G T HNSC 57132788 + 57132768 57132808 41 TGTGGGAACCAGGCAGCTGGCCAGAGAGGCCGCGGGGAGAT TGTGGGAACCAGGCAGCTGGCCATAGAGGCCGCGGGGAGAT < 41bp 0.870150692235124 0.557251571537156 0.6371101 0.49793157 prediction 0.625798241395935 Functional Loss - ZNF71 ENSG00000197951 CDS Human protein_coding chr19:57132788 chr19:57132791 stopgain 0.003 0 24 hm5C_associated_SNPs_52827 0 0 1 0 0 exosome 0.500231643921235 0.500231643921092 0.2742202 2.8466118351389e-13 hm5C_site_48179 DeepMRMD:0.2742202;iRNA_m5C:2.8466118351389e-13 48180 chr1 36553096 36553096 1 + G T UCEC 36553094 + 36553074 36553114 41 TCCGGCACCTGGAGGAGGATCTGCGCACAAAGCTCCTGAGC TCCGGCACCTGGAGGAGGATCTTCGCACAAAGCTCCTGAGC < 41bp 0.819150599655736 0.506254633584885 0.7144537 0.52576977 prediction 0.625791932141702 Functional Loss - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36553094 chr1:36553096 synonymous SNV . 0 23 hm5C_associated_SNPs_52828 0 0 0 0 2 exosome 0.500231747788305 0.500212223590673 0.37736786 3.90483952641407e-05 hm5C_site_48180 DeepMRMD:0.37736786;iRNA_m5C:3.90483952641407e-05 48181 chr17 6683381 6683381 1 + G T LUAD 6683379 + 6683359 6683399 41 TACAGAACCATCACCTTCAGCGGGAGACCTTCCAGGGTACA TACAGAACCATCACCTTCAGCGTGAGACCTTCCAGGGTACA < 41bp 0.812879474419926 0.486937930557238 0.8656908 0.4003878 prediction 0.625758948839853 Functional Loss - FBXO39 ENSG00000177294 CDS Human protein_coding chr17:6683379 chr17:6683381 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52829 0 0 0 0 0 exosome 0.500231643921092 0.500231620437454 0.7313816 4.69672765124329e-08 hm5C_site_48181 DeepMRMD:0.7313816;iRNA_m5C:4.69672765124329e-08 48182 chr18 9815192 9815192 1 + G T READ 9815189 + 9815169 9815209 41 AAACATTGTAATGGCCATCGCTGGAAACAAGTGCGACCTCT AAACATTGTAATGGCCATCGCTGTAAACAAGTGCGACCTCT < 41bp 0.812876902799022 0.453095070571919 0.238799 0.08899835 prediction 0.625753805598044 Functional Loss - RAB31 ENSG00000168461 CDS Human protein_coding chr18:9815189 chr18:9815192 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52830 0 0 1 0 2 Cytosol 0.500231644540064 0.500231643919367 0 1.24139476476159e-09 hm5C_site_48182 DeepMRMD:0;iRNA_m5C:1.24139476476159e-09 48183 chr16 89702774 89702774 1 + G T UCEC 89702772 + 89702752 89702792 41 CCGCATGTGCCGGATGTACCCGGAGACCTTCCTGTATGTCA CCGCATGTGCCGGATGTACCCGTAGACCTTCCTGTATGTCA < 41bp 0.844882320043933 0.532014719938373 0.89144766 0.23156768 prediction 0.625735200211119 Functional Loss - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89702772 chr16:89702774 stopgain 0.109 1 23 hm5C_associated_SNPs_52831 0 0 0 0 1 Ribosome 0.500224234730815 0.500230374369961 0.78289532 0 hm5C_site_48183 DeepMRMD:0.78289532;iRNA_m5C:0 48184 chr3 33187085 33187085 1 + A C rs74503694 33187081 + 33187061 33187101 41 AGCGAGTGGACGCCCTGCTCCGGGATTCCTGAGTCTGTAAA AGCGAGTGGACGCCCTGCTCCGGGCTTCCTGAGTCTGTAAA < 41bp 0.823181842829866 0.510314993073694 0.90839326 0.90991104 prediction 0.625733699512342 Functional Loss - CRTAP ENSG00000272149 ncRNA_intronic Human antisense chr3:33187081 chr3:33187085 . . 0 25 hm5C_associated_SNPs_52832 0 0 1 0 0 Endoplasmic reticulum 0.50023164391884 0.500231620771828 0 4.62940237255793e-08 hm5C_site_48184 DeepMRMD:0;iRNA_m5C:4.62940237255793e-08 48185 chr13 100020106 100020106 1 + G T LUSC 100020104 + 100020084 100020124 41 AGCGACAAAACGTAAACTATCAGGGCGGTCGGCAGTCTGAG AGCGACAAAACGTAAACTATCATGGCGGTCGGCAGTCTGAG < 41bp 0.826432126024143 0.513591507744766 0.94808674 0.91236836 prediction 0.625681236558754 Functional Loss - UBAC2 ENSG00000134882 CDS Human protein_coding chr13:100020104 chr13:100020106 nonsynonymous SNV 0.836 0 23 hm5C_associated_SNPs_52833 0 0 1 0 2 Endoplasmic reticulum 0.500231643919284 0.500231643928484 0.0714367600000001 0 hm5C_site_48185 DeepMRMD:0.0714367600000001;iRNA_m5C:0 48186 chr1 18661457 18661457 1 + G T BLCA 18661455 + 18661435 18661475 41 GGCATCTACGACCGCGCCACCAGGGAGAAGGTGGTCCTGGC GGCATCTACGACCGCGCCACCATGGAGAAGGTGGTCCTGGC < 41bp 0.812839817897194 0.491096822355628 0.9128548 0.44632295 prediction 0.625679635794388 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18661455 chr1:18661457 nonsynonymous SNV 0.979 4 23 hm5C_associated_SNPs_52834 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643920806 0.8257096 5.72208946891806e-13 hm5C_site_48186 DeepMRMD:0.8257096;iRNA_m5C:5.72208946891806e-13 48187 chr19 16186956 16186956 1 + G T UCEC 16186953 + 16186933 16186973 41 TGAAGGACGCGCAGGAGAAGCTGGAGCTCACGGAGAAGAAG TGAAGGACGCGCAGGAGAAGCTGTAGCTCACGGAGAAGAAG < 41bp 0.812835219889434 0.492989131033236 0.60976595 0.21843094 prediction 0.625670439778869 Functional Loss - TPM4 ENSG00000167460 CDS Human protein_coding chr19:16186953 chr19:16186956 stopgain 0.802 0 24 hm5C_associated_SNPs_52835 0 0 0 0 2 Ribosome 0.500231690016748 0.500231643921093 0.2195319 9.21913096973981e-08 hm5C_site_48187 DeepMRMD:0.2195319;iRNA_m5C:9.21913096973981e-08 48188 chr2 171686061 171686061 1 + G T COAD 171686058 + 171686038 171686078 41 TTCAAGGAGAGGCAATCCTCCAAGAACCTGCTTTCCTGTGA TTCAAGGAGAGGCAATCCTCCAATAACCTGCTTTCCTGTGA < 41bp 0.869020566764424 0.556211956019259 0.31195486 0.0033052564 prediction 0.625617221490331 Functional Loss - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171686058 chr2:171686061 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52836 0 0 0 0 2 Cytosol 0.500231643998423 0.500231643913361 0 1.70125913356856e-10 hm5C_site_48188 DeepMRMD:0;iRNA_m5C:1.70125913356856e-10 48189 chr15 76632705 76632705 1 + G T UCEC 76632702 + 76632682 76632722 41 CGCGTGCGGACTGTGCTGAACGAGAAGCAGCTGCACACTCT CGCGTGCGGACTGTGCTGAACGATAAGCAGCTGCACACTCT < 41bp 0.878380166024086 0.565579159265553 0.6991242 0.41127902 prediction 0.625602013517066 Functional Loss - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76632702 chr15:76632705 stopgain 1.000 5 24 hm5C_associated_SNPs_52837 0 0 1 0 1 Cytosol 0.500231656981709 0.500231645357354 0.3982484 2.32487111784252e-08 hm5C_site_48189 DeepMRMD:0.3982484;iRNA_m5C:2.32487111784252e-08 48190 chr3 148558536 148558536 1 + A C LUSC 148558532 + 148558512 148558552 41 GTTTGATAGCCGGGTTCGTGCAACAGGACACAGTTATGAGA GTTTGATAGCCGGGTTCGTGCAACCGGACACAGTTATGAGA < 41bp 0.812794277278256 0.419957471354659 0.21008658 0.28932 prediction 0.625588554556512 Functional Loss - CPB1 ENSG00000153002 CDS Human protein_coding chr3:148558532 chr3:148558536 synonymous SNV . 0 25 hm5C_associated_SNPs_52838 0 0 0 0 1 exosome 0.50023164392023 0.500231643921092 0 0 hm5C_site_48190 DeepMRMD:0;iRNA_m5C:0 48191 chr11 67171759 67171759 1 + G T SARC 67171757 + 67171737 67171777 41 TTGGGGTCCGACTCAGAGCTCAGCGGGCCTGGCCCATATCG TTGGGGTCCGACTCAGAGCTCATCGGGCCTGGCCCATATCG < 41bp 0.830647215941286 0.517890585378565 0.9316268 0.593665 prediction 0.625513261125442 Functional Loss - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67171757 chr11:67171759 nonsynonymous SNV 0.935 0 23 hm5C_associated_SNPs_52839 0 0 0 0 1 nucleus 0.500231643921092 0.500231650600676 0.6759236 0 hm5C_site_48191 DeepMRMD:0.6759236;iRNA_m5C:0 48192 chr12 52448843 52448843 1 + G T THYM 52448840 + 52448820 52448860 41 TTCTCCACACCTTGAGGGCTCGGGGATACTGGATACACCCG TTCTCCACACCTTGAGGGCTCGGTGATACTGGATACACCCG < 41bp 0.883904760858737 0.571160976276699 0.8615639 0.04856515 prediction 0.625487569164076 Functional Loss - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52448840 chr12:52448843 nonsynonymous SNV 0.042 0 24 hm5C_associated_SNPs_52840 0 0 0 0 0 Endoplasmic reticulum 0.500231672351394 0.500230110417736 0.7231278 3.1238673161571e-06 hm5C_site_48192 DeepMRMD:0.7231278;iRNA_m5C:3.1238673161571e-06 48193 chr17 21207849 21207849 1 + G T LUSC 21207847 + 21207827 21207867 41 GCCAAGACGATGGATGCCGGCTGCAAGCCCTACATGGCCGT GCCAAGACGATGGATGCCGGCTTCAAGCCCTACATGGCCGT < 41bp 0.812717985393112 0.48938051308857 0.16859165 0.070399255 prediction 0.625435970786223 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21207847 chr17:21207849 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52841 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48193 DeepMRMD:0;iRNA_m5C:0 48194 chr2 95537378 95537378 1 + C A LUSC 95537380 - 95537360 95537400 41 ACGTGTAGGCGCCCGTGTTACGGGCCACGTCGTACTCTTTG ACGTGTAGGCGCCCGTGTTACGTGCCACGTCGTACTCTTTG < 41bp 0.812706839210634 0.486340967215257 0.9086764 0.40600112 prediction 0.625413678421268 Functional Loss - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95537380 chr2:95537378 synonymous SNV . 0 23 hm5C_associated_SNPs_52842 0 0 0 0 0 chromatin 0.500231604217399 0.500231592615423 0.8173528 2.32039518710536e-08 hm5C_site_48194 DeepMRMD:0.8173528;iRNA_m5C:2.32039518710536e-08 48195 chr12 55420784 55420784 1 + G T LUAD 55420781 + 55420761 55420801 41 TCTGTCCTCCTGGAGAAGCACGAGGATAAATCTCCTATTTG TCTGTCCTCCTGGAGAAGCACGATGATAAATCTCCTATTTG < 41bp 0.812704030712728 0.438128403627489 0.5433632 0.40470812 prediction 0.625408061425455 Functional Loss - NEUROD4 ENSG00000123307 CDS Human protein_coding chr12:55420781 chr12:55420784 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_52843 0 0 0 0 0 Cytosol 0.50023164391934 0.500231643921094 0.0867264000000001 0 hm5C_site_48195 DeepMRMD:0.0867264000000001;iRNA_m5C:0 48196 chr17 34144726 34144726 1 + G T SKCM 34144723 + 34144703 34144743 41 CTTTTTATGTGTTCTAGATTCTGGAAGTTACGGTCAGTCTG CTTTTTATGTGTTCTAGATTCTGTAAGTTACGGTCAGTCTG < 41bp 0.853613921767503 0.540913749343464 0.24440852 0.086253405 prediction 0.625400344848078 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34144723 chr17:34144726 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52844 0 0 1 0 2 Cytosol 0.500239810434803 0.500231643917847 0 1.63330339122414e-05 hm5C_site_48196 DeepMRMD:0;iRNA_m5C:1.63330339122414e-05 48197 chr9 104075196 104075196 1 + G T SKCM 104075194 + 104075174 104075214 41 TCAACCGGGTCTCTGAGTATCGGAACCACTGCTCGGACGTG TCAACCGGGTCTCTGAGTATCGTAACCACTGCTCGGACGTG < 41bp 0.812696901404191 0.488924550131477 0.9248472 0.3733284 prediction 0.625393802808382 Functional Loss - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104075194 chr9:104075196 synonymous SNV . 0 23 hm5C_associated_SNPs_52845 0 0 1 0 1 cytosol 0.500231643920448 0.500231643921092 0.8496944 0 hm5C_site_48197 DeepMRMD:0.8496944;iRNA_m5C:0 48198 chr1 17607195 17607195 1 + G T SARC 17607193 + 17607173 17607213 41 TCGACTGGAACCGTGAGGTGCTGAAGCGGGAGCTGGGCCTG TCGACTGGAACCGTGAGGTGCTTAAGCGGGAGCTGGGCCTG < 41bp 0.823064074744848 0.510369694045607 0.87457263 0.80658734 prediction 0.625388761398482 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17607193 chr1:17607195 synonymous SNV . 0 23 hm5C_associated_SNPs_52846 0 0 0 0 2 unknown 0.500231643921092 0.500231643920301 0.13597058 1.58206781009085e-12 hm5C_site_48198 DeepMRMD:0.13597058;iRNA_m5C:1.58206781009085e-12 48199 chr17 45822274 45822274 1 + G T LUAD 45822271 + 45822251 45822291 41 AGGCGAAGGATGTGGTTCCCCAGGCTTACTGGCTGGGGGCC AGGCGAAGGATGTGGTTCCCCAGTCTTACTGGCTGGGGGCC < 41bp 0.812690798470213 0.435668893092059 0.90354306 0.44160578 prediction 0.625381596940425 Functional Loss - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45822271 chr17:45822274 nonsynonymous SNV 0.948 1 24 hm5C_associated_SNPs_52847 0 0 0 0 0 exosome 0.500231644260394 0.50023164392163 0.80708612 6.77527811632217e-10 hm5C_site_48199 DeepMRMD:0.80708612;iRNA_m5C:6.77527811632217e-10 48200 chr9 132566477 132566477 1 + G T LUAD 132566474 + 132566454 132566494 41 AACCACTGACCCTTTCCTTACACGGCTGGGCTGGCACAGGC AACCACTGACCCTTTCCTTACACTGCTGGGCTGGCACAGGC < 41bp 0.81267976116757 0.445210126207555 0.0912365 0.06612986 prediction 0.625359522335139 Functional Loss - TOR1B ENSG00000136816 CDS Human protein_coding chr9:132566474 chr9:132566477 nonsynonymous SNV 0.972 5 24 hm5C_associated_SNPs_52848 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_48200 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 48201 chr14 21961148 21961148 1 + A C UCEC 21961144 + 21961124 21961164 41 AGATGCCACAGCCCCCGACTCAGCAGCAAGTTACCATTCTG AGATGCCACAGCCCCCGACTCAGCCGCAAGTTACCATTCTG < 41bp 0.891471724365836 0.578801421651543 0.23271969 0.098097086 prediction 0.625340605428585 Functional Loss - TOX4 ENSG00000092203 CDS Human protein_coding chr14:21961144 chr14:21961148 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_52849 0 0 1 0 0 Ribosome 0.500231699452627 0.500231643921092 0 1.11063068963801e-07 hm5C_site_48201 DeepMRMD:0;iRNA_m5C:1.11063068963801e-07 48202 chr1 100964796 100964796 1 + G T UCEC 100964793 + 100964773 100964813 41 CGGGCTTTCTTCTTCTTCAGCGAGATTCCTGAGCCGTTCTA CGGGCTTTCTTCTTCTTCAGCGATATTCCTGAGCCGTTCTA < 41bp 0.812668959281833 0.457599667369315 0.75474244 0.22226822 prediction 0.625337918563667 Functional Loss - CDC14A ENSG00000079335 CDS Human protein_coding chr1:100964793 chr1:100964796 nonsynonymous SNV 0.985 4 24 hm5C_associated_SNPs_52850 0 0 1 0 1 Cytosol 0.500231644139985 0.500231643921092 0.50948488 4.37784475337821e-10 hm5C_site_48202 DeepMRMD:0.50948488;iRNA_m5C:4.37784475337821e-10 48203 chr5 140616304 140616304 1 + G T STAD 140616301 + 140616281 140616321 41 GCGGCCTCGATGGGTCGCTGCTCGGTGCCCGAGTGTCCCTT GCGGCCTCGATGGGTCGCTGCTCTGTGCCCGAGTGTCCCTT < 41bp 0.840193534568572 0.52753279496773 0.2188282 0.11401516 prediction 0.625321479201685 Functional Loss - PCDHB18P ENSG00000146001 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:140616301 chr5:140616304 . . 0 24 hm5C_associated_SNPs_52851 0 0 0 0 0 unknown 0.500231643921099 0.500231643921084 0 2.97539770599542e-14 hm5C_site_48203 DeepMRMD:0;iRNA_m5C:2.97539770599542e-14 48204 chr14 21215869 21215869 1 + G T UCEC 21215866 + 21215846 21215886 41 TTCATTACTTAAGTCCAAGTCGAGAATTCAAAGAGTACAAA TTCATTACTTAAGTCCAAGTCGATAATTCAAAGAGTACAAA < 41bp 0.852218786809158 0.53958116797115 0.03893912 0.023388356 prediction 0.625275237676016 Functional Loss - EDDM3A ENSG00000181562 CDS Human protein_coding chr14:21215866 chr14:21215869 stopgain 0.002 0 24 hm5C_associated_SNPs_52852 0 0 0 0 0 unknown 0.500231643921098 0.50023164382518 0 1.91835658469586e-10 hm5C_site_48204 DeepMRMD:0;iRNA_m5C:1.91835658469586e-10 48205 chr7 130008324 130008324 1 + G T COAD 130008322 + 130008302 130008342 41 ACGCCTTCAGCTTTGAGCTCCGGGACACTGGGCAGTATGGC ACGCCTTCAGCTTTGAGCTCCGTGACACTGGGCAGTATGGC < 41bp 0.817643772521024 0.505007617793258 0.54868495 0.10384536 prediction 0.625272309455532 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130008322 chr7:130008324 nonsynonymous SNV 0.972 1 23 hm5C_associated_SNPs_52853 0 0 0 0 1 exosome 0.500231643919066 0.500231649542583 0.0973698999999999 0 hm5C_site_48205 DeepMRMD:0.0973698999999999;iRNA_m5C:0 48206 chr1 32936709 32936709 1 + A C UCEC 32936705 + 32936685 32936725 41 CATCAGGTTGACAGTGAAAGCCCCAGTTCAGGCCGGGAGGG CATCAGGTTGACAGTGAAAGCCCCCGTTCAGGCCGGGAGGG < 41bp 0.812632083546614 0.421555333650366 0.31559592 0.22230235 prediction 0.625264167093228 Functional Loss - ZBTB8B ENSG00000254553;ENSG00000273274 CDS Human other chr1:32936705 chr1:32936709 nonsynonymous SNV 0.851 0 25 hm5C_associated_SNPs_52854 0 0 1 0 0 exosome 0.500231621025366 0.500231643797848 0 0 hm5C_site_48206 DeepMRMD:0;iRNA_m5C:0 48207 chr3 132051146 132051146 1 + G T UCEC 132051143 + 132051123 132051163 41 ATCTGGAATCCTATCCTACTCTGGCAGCCCATCCCGGTGCA ATCTGGAATCCTATCCTACTCTGTCAGCCCATCCCGGTGCA < 41bp 0.81262703494022 0.437152756000778 0.15906852 0.044828832 prediction 0.625254069880439 Functional Loss - ACPP ENSG00000014257 CDS Human protein_coding chr3:132051143 chr3:132051146 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_52855 0 0 0 0 1 Endoplasmic reticulum 0.500231643938588 0.500231643921095 0 3.49862361304076e-11 hm5C_site_48207 DeepMRMD:0;iRNA_m5C:3.49862361304076e-11 48208 chr17 78079646 78079646 1 + G T COAD 78079643 + 78079623 78079663 41 CTCTACAGCGTGGAGTTCTCCGAGGAGCCCTTCGGGGTGAT CTCTACAGCGTGGAGTTCTCCGATGAGCCCTTCGGGGTGAT < 41bp 0.812606469894972 0.439242007944004 0.90408516 0.34869474 prediction 0.625212939789945 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78079643 chr17:78079646 nonsynonymous SNV 0.962 1 24 hm5C_associated_SNPs_52856 0 0 1 0 2 Endoplasmic reticulum 0.500231431614642 0.500231642509459 0.80817032 0 hm5C_site_48208 DeepMRMD:0.80817032;iRNA_m5C:0 48209 chr1 22986043 22986043 1 + A C LUAD 22986039 + 22986019 22986059 41 ATCTCCCAGGCCCAGCTCAGCTGCACCGGGCCCCCAGCCAT ATCTCCCAGGCCCAGCTCAGCTGCCCCGGGCCCCCAGCCAT < 41bp 0.893096847308274 0.580501938525085 0.48665795 0.37802675 prediction 0.625189817566376 Functional Loss - C1QB ENSG00000173369 CDS Human protein_coding chr1:22986039 chr1:22986043 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_52857 0 0 0 0 1 exosome 0.500231643921092 0.500231643908448 0 2.52886600549118e-11 hm5C_site_48209 DeepMRMD:0;iRNA_m5C:2.52886600549118e-11 48210 chr15 41146841 41146841 1 + G T GBM 41146838 + 41146818 41146858 41 TGACCTTTCCTCTCTGCAGACACGAGTGGCTTTGACGAGCT TGACCTTTCCTCTCTGCAGACACTAGTGGCTTTGACGAGCT < 41bp 0.812588068308168 0.457055748059233 0.28139338 0.061476827 prediction 0.625176136616336 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41146838 chr15:41146841 synonymous SNV . 0 24 hm5C_associated_SNPs_52858 0 0 0 0 2 Ribosome 0.500231660583691 0.500231643921093 0 3.33251961581738e-08 hm5C_site_48210 DeepMRMD:0;iRNA_m5C:3.33251961581738e-08 48211 chr12 5153858 5153858 1 + G T LUAD 5153855 + 5153835 5153875 41 TATCCTCTACTACTACCAGTCCGGGGGCCGCCTGCGGAGGC TATCCTCTACTACTACCAGTCCGTGGGCCGCCTGCGGAGGC < 41bp 0.812564883367756 0.446000476151751 0.7596989 0.11700842 prediction 0.625129766735512 Functional Loss - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5153855 chr12:5153858 nonsynonymous SNV 0.955 4 24 hm5C_associated_SNPs_52859 0 0 0 0 0 exosome 0.500231643952776 0.500231645930881 0.5193978 0 hm5C_site_48211 DeepMRMD:0.5193978;iRNA_m5C:0 48212 chr6 99283767 99283767 1 + G T BLCA 99283765 + 99283745 99283785 41 GGAGGAGGCGGACTCGTCCTCGGGCAGCCCCACGAGCATAG GGAGGAGGCGGACTCGTCCTCGTGCAGCCCCACGAGCATAG < 41bp 0.816827356358489 0.504274033931994 0.88427114 0.39429775 prediction 0.625106644852991 Functional Loss - POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283765 chr6:99283767 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52860 0 0 0 0 0 exosome 0.500231626577771 0.500231633911538 0.76854228 0 hm5C_site_48212 DeepMRMD:0.76854228;iRNA_m5C:0 48213 chr1 152488014 152488014 1 + G T SKCM 152488012 + 152487992 152488032 41 GGCTGCTGCGGCGACTCAGGCTGCTGCGGCTCCAGCTCCAC GGCTGCTGCGGCGACTCAGGCTTCTGCGGCTCCAGCTCCAC < 41bp 0.814238619702593 0.501692405683988 0.80735254 0.57267475 prediction 0.625092428037209 Functional Loss - CRCT1 ENSG00000169509 CDS Human protein_coding chr1:152488012 chr1:152488014 nonsynonymous SNV 0.103 2 23 hm5C_associated_SNPs_52861 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.46935558 0 hm5C_site_48213 DeepMRMD:0.46935558;iRNA_m5C:0 48214 chr2 44021678 44021678 1 + A C GBM 44021674 + 44021654 44021694 41 ATGGAAAATCTCTTGCAAGCCACAAAAAGCCATGTAGACAA ATGGAAAATCTCTTGCAAGCCACACAAAGCCATGTAGACAA < 41bp 0.854488705334382 0.541947141867384 0.165346 0.012626022 prediction 0.625083126933994 Functional Loss - DYNC2LI1 ENSG00000138036 CDS Human protein_coding chr2:44021674 chr2:44021678 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_52862 0 0 1 2 1 membrane 0.500231643921092 0.500231643921092 0 0 hm5C_site_48214 DeepMRMD:0;iRNA_m5C:0 48215 chr8 43212099 43212099 1 + G T UCEC 43212096 + 43212076 43212116 41 CTCAGAAAGGTGAATGTGAGCAAGAACGCTACAGTTCGAGG CTCAGAAAGGTGAATGTGAGCAATAACGCTACAGTTCGAGG < 41bp 0.812537515154362 0.495438916166902 0.12907714 0.09063706 prediction 0.625075030308723 Functional Loss - POTEA ENSG00000188877 ncRNA_exonic Human polymorphic_pseudogene chr8:43212096 chr8:43212099 . . 0 24 hm5C_associated_SNPs_52863 0 0 0 0 1 unknown 0.500231729950502 0.500231728356029 0 3.18894555206839e-09 hm5C_site_48215 DeepMRMD:0;iRNA_m5C:3.18894555206839e-09 48216 chr1 248569835 248569835 1 + G T LUSC 248569833 + 248569813 248569853 41 ATGTGGCCATTTGCAACCCTCTGAGATACCCTGTCCTCATG ATGTGGCCATTTGCAACCCTCTTAGATACCCTGTCCTCATG < 41bp 0.827414742021779 0.514882635351629 0.5190637 0.18063706 prediction 0.625064213340299 Functional Loss - OR2T1 ENSG00000175143 CDS Human protein_coding chr1:248569833 chr1:248569835 synonymous SNV . 0 23 hm5C_associated_SNPs_52864 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.0381274 0 hm5C_site_48216 DeepMRMD:0.0381274;iRNA_m5C:0 48217 chr10 75535321 75535321 1 + G T OV 75535318 + 75535298 75535338 41 GTTGGAAAGAGATGTGGCTGCAAGATTATTGGCAAGGTCTG GTTGGAAAGAGATGTGGCTGCAATATTATTGGCAAGGTCTG < 41bp 0.81252984140655 0.459154910443196 0.8653071 0.48057348 prediction 0.625059682813099 Functional Loss - FUT11 ENSG00000196968 CDS Human protein_coding chr10:75535318 chr10:75535321 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52865 0 0 1 0 1 Endoplasmic reticulum 0.499998753035722 0.500231692260541 0.7306142 0 hm5C_site_48217 DeepMRMD:0.7306142;iRNA_m5C:0 48218 chr15 23811811 23811811 1 + G T UCEC 23811808 + 23811788 23811828 41 AGGGCCTGCATTGAAGCACACGAGAAAGATATGGAACTCTC AGGGCCTGCATTGAAGCACACGATAAAGATATGGAACTCTC < 41bp 0.812524861389018 0.459529673731135 0.42316002 0.08495039 prediction 0.625049722778036 Functional Loss - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811808 chr15:23811811 nonsynonymous SNV 0.929 2 24 hm5C_associated_SNPs_52866 0 0 0 0 0 chromatin 0.500231640769324 0.500231658977344 0 0 hm5C_site_48218 DeepMRMD:0;iRNA_m5C:0 48219 chr19 38028480 38028480 1 + G T LUAD 38028477 + 38028457 38028497 41 AGAACATCAGAGAACACACACAGGAGAGAGACCCTTTGTCT AGAACATCAGAGAACACACACAGTAGAGAGACCCTTTGTCT < 41bp 0.812522458363404 0.442221906614042 0.89815104 0.1852715 prediction 0.625044916726808 Functional Loss - ZNF793 ENSG00000188227 CDS Human protein_coding chr19:38028477 chr19:38028480 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_52867 0 0 1 0 0 Nucleus 0.500231630046026 0.500231652974397 0.79630208 0 hm5C_site_48219 DeepMRMD:0.79630208;iRNA_m5C:0 48220 chr10 114585159 114585159 1 + A C rs2475186 114585155 + 114585135 114585175 41 TGGTGGCAGCAGTCCCCATCCTGCACTGGCAGCCCAGGGCA TGGTGGCAGCAGTCCCCATCCTGCCCTGGCAGCCCAGGGCA < 41bp 0.851949680852016 0.539434597814694 0.26568493 0.1427516 prediction 0.625030166074643 Functional Loss - LOC103344931 ENSG00000260917 ncRNA_exonic Human sense_overlapping chr10:114585155 chr10:114585159 . . 0 25 hm5C_associated_SNPs_52868 0 0 0 0 0 unknown 0.500231643918602 0.500231643920829 0 0 hm5C_site_48220 DeepMRMD:0;iRNA_m5C:0 48221 chr8 124975546 124975546 1 + G T LUAD 124975544 + 124975524 124975564 41 AAGGTGACACTGAAGCACTGCAGGAGGAGCCTTCTCACCAG AAGGTGACACTGAAGCACTGCATGAGGAGCCTTCTCACCAG < 41bp 0.812606757082196 0.500139435437393 0.82044303 0.10741401 prediction 0.624934643289605 Functional Loss - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:124975544 chr8:124975546 nonsynonymous SNV 0.791 0 23 hm5C_associated_SNPs_52869 0 0 0 0 2 exosome 0.500231643921092 0.500231643991315 0.64088606 0 hm5C_site_48221 DeepMRMD:0.64088606;iRNA_m5C:0 48222 chrX 48340055 48340055 1 + G T LUAD 48340052 + 48340032 48340072 41 TCTGTCAGGGCTATGACCCTCCCGAGGGCTTCATCCCGGAC TCTGTCAGGGCTATGACCCTCCCTAGGGCTTCATCCCGGAC < 41bp 0.873855249694074 0.561395945282082 0.35923177 0.23861244 prediction 0.624918608823983 Functional Loss - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340052 chrX:48340055 stopgain 0.993 0 24 hm5C_associated_SNPs_52870 0 0 1 0 2 Ribosome 0.500231643921094 0.500231643921092 0 2.22044604925031e-15 hm5C_site_48222 DeepMRMD:0;iRNA_m5C:2.22044604925031e-15 48223 chr4 90816330 90816330 1 + G T LUAD 90816327 + 90816307 90816347 41 CGGCGGAGATAGCTACAACTCCAGAGGCAAGAACTTCTGAA CGGCGGAGATAGCTACAACTCCATAGGCAAGAACTTCTGAA < 41bp 0.812455498120423 0.461021940203776 0.9261404 0.40304196 prediction 0.624910996240846 Functional Loss - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90816327 chr4:90816330 stopgain 0.873 0 24 hm5C_associated_SNPs_52871 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0.8522808 0 hm5C_site_48223 DeepMRMD:0.8522808;iRNA_m5C:0 48224 chr14 77302651 77302651 1 + G T UCEC 77302649 + 77302629 77302669 41 TACAAGAGAACTACTACCTCCAGGAGATGGTACTGTGCCCC TACAAGAGAACTACTACCTCCATGAGATGGTACTGTGCCCC < 41bp 0.816475575076846 0.50403906924046 0.9260337 0.774789 prediction 0.624873011672771 Functional Loss - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77302649 chr14:77302651 nonsynonymous SNV 0.995 1 23 hm5C_associated_SNPs_52872 0 0 0 1 1 exosome 0.500231643921093 0.500231643926349 0.3024894 0 hm5C_site_48224 DeepMRMD:0.3024894;iRNA_m5C:0 48225 chr14 64886605 64886605 1 + G T LIHC 64886602 + 64886582 64886622 41 TAAAGGGGAGTGGATCAAACCTGGGGCAATAGTCATCGACT TAAAGGGGAGTGGATCAAACCTGTGGCAATAGTCATCGACT < 41bp 0.812426578054261 0.440810741401235 0.67805403 0.113422364 prediction 0.624853156108523 Functional Loss - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64886602 chr14:64886605 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52873 0 0 1 0 2 Nucleus 0.500231607560581 0.500231649045033 0.35610806 0 hm5C_site_48225 DeepMRMD:0.35610806;iRNA_m5C:0 48226 chr1 186276262 186276262 1 + A C rs554943190 186276258 + 186276238 186276278 41 ACTCCCAAGGAGCCTGCACCCACCACCAAGGAGCCTGCACC ACTCCCAAGGAGCCTGCACCCACCCCCAAGGAGCCTGCACC < 41bp 0.885684740525508 0.573266791064409 0.10073739 0.079719216 prediction 0.624835898922199 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276258 chr1:186276262 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_52874 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643921092 0 0 hm5C_site_48226 DeepMRMD:0;iRNA_m5C:0 48227 chr17 39262078 39262078 1 + G T PRAD 39262076 + 39262056 39262096 41 GCTGCCAGTCTGTGTGCTGCCAGCCCAACTGCTGCCGCCCC GCTGCCAGTCTGTGTGCTGCCATCCCAACTGCTGCCGCCCC < 41bp 0.830531492893392 0.51811451865237 0.2870112 0.09313282 prediction 0.624833948482044 Functional Loss - KRTAP4-9 ENSG00000212722 CDS Human protein_coding chr17:39262076 chr17:39262078 nonsynonymous SNV 0.015 1 23 hm5C_associated_SNPs_52875 0 0 0 0 0 unknown 0.500231643695919 0.500231595484078 0 9.64236812617258e-08 hm5C_site_48227 DeepMRMD:0;iRNA_m5C:9.64236812617258e-08 48228 chr22 42276797 42276797 1 + G T LUAD 42276795 + 42276775 42276815 41 GGGCACTGCCCACCTCCCGCCTGGACCTGGCCTGCAGCCTC GGGCACTGCCCACCTCCCGCCTTGACCTGGCCTGCAGCCTC < 41bp 0.812402405857648 0.485992343132897 0.43832365 0.13287878 prediction 0.624804811715297 Functional Loss - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42276795 chr22:42276797 stopgain 1.000 0 23 hm5C_associated_SNPs_52876 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643920974 0 2.37809771874709e-13 hm5C_site_48228 DeepMRMD:0;iRNA_m5C:2.37809771874709e-13 48229 chrX 114426442 114426442 1 + G T COAD 114426440 + 114426420 114426460 41 TCCAGCCGGAACGACCCCTGCAGAGGAGGAGGCCGCTACGA TCCAGCCGGAACGACCCCTGCATAGGAGGAGGCCGCTACGA < 41bp 0.812378118211247 0.486481359181449 0.4725093 0.19212785 prediction 0.624756236422493 Functional Loss - RBMXL3 ENSG00000175718 CDS Human protein_coding chrX:114426440 chrX:114426442 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_52877 0 0 0 0 0 exosome 0.500231644998603 0.500231663916091 0 0 hm5C_site_48229 DeepMRMD:0;iRNA_m5C:0 48230 chr17 65026904 65026904 1 + G T LUAD 65026901 + 65026881 65026921 41 TCCACCGAGGCCTCGCCCTCCAGGGACGTGTCGCCCATGGG TCCACCGAGGCCTCGCCCTCCAGTGACGTGTCGCCCATGGG < 41bp 0.812359990586905 0.436489358988803 0.94134414 0.20396852 prediction 0.62471998117381 Functional Loss - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65026901 chr17:65026904 nonsynonymous SNV 0.604 2 24 hm5C_associated_SNPs_52878 0 0 0 0 0 Endoplasmic reticulum 0.500231382607363 0.500231643231369 0.88268828 0 hm5C_site_48230 DeepMRMD:0.88268828;iRNA_m5C:0 48231 chr15 89169966 89169966 1 + G T rs549443521 89169963 + 89169943 89169983 41 TGCGCAAGGCTGTCCCCTTCCAGGTGGCCCAGAAAGAGGTA TGCGCAAGGCTGTCCCCTTCCAGTTGGCCCAGAAAGAGGTA < 41bp 0.812330511763988 0.437202291003129 0.9030411 0.5711068 prediction 0.624661023527976 Functional Loss - AEN ENSG00000181026 CDS Human protein_coding chr15:89169963 chr15:89169966 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_52879 0 0 1 0 1 Ribosome 0.500231643922004 0.500231643921093 0.6638686 1.82320825103943e-12 hm5C_site_48231 DeepMRMD:0.6638686;iRNA_m5C:1.82320825103943e-12 48232 chr16 20429537 20429537 1 + G T UCEC 20429534 + 20429514 20429554 41 AGCCTGGGGACAGAATGATGCTGGTACTCCCACGGCTCCCG AGCCTGGGGACAGAATGATGCTGTTACTCCCACGGCTCCCG < 41bp 0.812330370877515 0.430146785357853 0.73703414 0.40942746 prediction 0.62466074175503 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20429534 chr16:20429537 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_52880 0 0 0 0 1 cytosol 0.500229834337067 0.500231643906696 0.47406828 0 hm5C_site_48232 DeepMRMD:0.47406828;iRNA_m5C:0 48233 chr2 204735551 204735551 1 + G T UCEC 204735548 + 204735528 204735568 41 ATCAAGTGAACCTCACTATCCAAGGACTGAGGGCCATGGAC ATCAAGTGAACCTCACTATCCAATGACTGAGGGCCATGGAC < 41bp 0.812317261559451 0.451598955721289 0.53256214 0.07629883 prediction 0.624634523118902 Functional Loss - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204735548 chr2:204735551 stopgain 0.973 1 24 hm5C_associated_SNPs_52881 0 0 0 0 0 exosome 0.500231643921103 0.50023164378565 0.06512428 2.70905520238784e-10 hm5C_site_48233 DeepMRMD:0.06512428;iRNA_m5C:2.70905520238784e-10 48234 chr2 85598666 85598666 1 + G T KIRC 85598663 + 85598643 85598683 41 TGTGCCCTTCATGGAAACCACTGGGAGGACCTGGGCTTTCA TGTGCCCTTCATGGAAACCACTGTGAGGACCTGGGCTTTCA < 41bp 0.812312591338058 0.447337013353681 0.88468546 0.42707285 prediction 0.624625182676116 Functional Loss - ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598663 chr2:85598666 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52882 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921113 0.76937092 0 hm5C_site_48234 DeepMRMD:0.76937092;iRNA_m5C:0 48235 chr1 101705257 101705257 1 + G T UCEC 101705254 + 101705234 101705274 41 AGCCGCCGCCTGACGTTCCGCAAGAACATTTCCAAGGCCAG AGCCGCCGCCTGACGTTCCGCAATAACATTTCCAAGGCCAG < 41bp 0.812310469946867 0.437977270444702 0.10868999 0.0519633 prediction 0.624620939893734 Functional Loss - S1PR1 ENSG00000170989 CDS Human protein_coding chr1:101705254 chr1:101705257 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_52883 0 0 0 0 0 Endoplasmic reticulum 0.500231643874305 0.500231643921093 0 0 hm5C_site_48235 DeepMRMD:0;iRNA_m5C:0 48236 chr9 72435884 72435884 1 + A C rs149641101 72435880 + 72435860 72435900 41 GACCACCGGACTTGGTGGAGCGCAAGGGCTCCCTGACCCTC GACCACCGGACTTGGTGGAGCGCACGGGCTCCCTGACCCTC < 41bp 0.812303463715638 0.483192764169816 0.7124655 0.47482532 prediction 0.624606927431275 Functional Loss - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72435880 chr9:72435884 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_52884 0 0 0 0 1 nucleoplasm 0.500231643988654 0.500231646733485 0.424931 0 hm5C_site_48236 DeepMRMD:0.424931;iRNA_m5C:0 48237 chr19 5772927 5772927 1 + G T LUAD 5772925 + 5772905 5772945 41 TGTACCTCCCAGCCGCAGAACTGGACCACCATGATAAAGGA TGTACCTCCCAGCCGCAGAACTTGACCACCATGATAAAGGA < 41bp 0.812287596690008 0.490113792727024 0.47498745 0.23199725 prediction 0.624575193380015 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5772925 chr19:5772927 nonsynonymous SNV 0.857 3 23 hm5C_associated_SNPs_52885 0 0 0 0 1 nucleus 0.500231643921255 0.500231643921141 0 2.27373675443232e-13 hm5C_site_48237 DeepMRMD:0;iRNA_m5C:2.27373675443232e-13 48238 chr19 5772928 5772928 1 + G T LUAD 5772925 + 5772905 5772945 41 TGTACCTCCCAGCCGCAGAACTGGACCACCATGATAAAGGA TGTACCTCCCAGCCGCAGAACTGTACCACCATGATAAAGGA < 41bp 0.812287596690008 0.437215687904025 0.47498745 0.3783481 prediction 0.624575193380015 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5772925 chr19:5772928 nonsynonymous SNV 0.741 3 24 hm5C_associated_SNPs_52886 0 0 0 0 1 nucleus 0.500231643921255 0.500231643921092 0 3.25073301610246e-13 hm5C_site_48238 DeepMRMD:0;iRNA_m5C:3.25073301610246e-13 48239 chr16 67132628 67132628 1 + G T COAD 67132625 + 67132605 67132645 41 CATTGCAGGCAAGAAGACAACAAGACCCTAGTCCTGGTTCC CATTGCAGGCAAGAAGACAACAATACCCTAGTCCTGGTTCC < 41bp 0.812285990441773 0.46516590043062 0.068463415 0.04240343 prediction 0.624571980883546 Functional Loss - CBFB ENSG00000067955 CDS Human protein_coding chr16:67132625 chr16:67132628 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52887 0 0 1 0 1 Ribosome 0.500231643826589 0.500231632363192 0 2.29267940188294e-08 hm5C_site_48239 DeepMRMD:0;iRNA_m5C:2.29267940188294e-08 48240 chr5 140774264 140774264 1 + G T LUAD 140774261 + 140774241 140774281 41 CTGCACACGGGCGAGGTGCGCACGGCGCGAGCCCTGCTGGA CTGCACACGGGCGAGGTGCGCACTGCGCGAGCCCTGCTGGA < 41bp 0.812285206073295 0.442520338619132 0.90648735 0.6798628 prediction 0.62457041214659 Functional Loss - PCDHGA8 ENSG00000253767 CDS Human protein_coding chr5:140774261 chr5:140774264 synonymous SNV . 0 24 hm5C_associated_SNPs_52888 0 0 0 0 0 exosome 0.500231851773561 0.5002316444507 0.4532491 4.14645722646156e-07 hm5C_site_48240 DeepMRMD:0.4532491;iRNA_m5C:4.14645722646156e-07 48241 chr8 106815461 106815461 1 + G T LUSC 106815458 + 106815438 106815478 41 TAGTGAATGGTGGACTGAAACAAGATGAGAGACCTGCTGCC TAGTGAATGGTGGACTGAAACAATATGAGAGACCTGCTGCC < 41bp 0.812279497479859 0.477278970392824 0.92981285 0.26401567 prediction 0.624558994959718 Functional Loss - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106815458 chr8:106815461 nonsynonymous SNV 0.932 1 24 hm5C_associated_SNPs_52889 0 0 0 0 0 chromatin 0.500231644245735 0.500231643921084 0.8596257 6.49300835320332e-10 hm5C_site_48241 DeepMRMD:0.8596257;iRNA_m5C:6.49300835320332e-10 48242 chr15 38776538 38776538 1 + A C UCEC 38776534 + 38776514 38776554 41 CTCCAGAAATGCCCCCTTGGCAAAAGAGACAAGAAGGCGGC CTCCAGAAATGCCCCCTTGGCAAACGAGACAAGAAGGCGGC < 41bp 0.883601407551785 0.571324089274574 0.10456672 0.1122278 prediction 0.624554636554423 Functional Loss - FAM98B ENSG00000171262 CDS Human protein_coding chr15:38776534 chr15:38776538 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_52890 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_48242 DeepMRMD:0;iRNA_m5C:0 48243 chr17 5993702 5993702 1 + G T SARC 5993700 + 5993680 5993720 41 TTACTGCGGGAACCGGCTGCCAGCGGTGAGCGTGGGGCTGG TTACTGCGGGAACCGGCTGCCATCGGTGAGCGTGGGGCTGG < 41bp 0.81226700081888 0.485198212561444 0.86978364 0.50943404 prediction 0.62453400163776 Functional Loss - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:5993700 chr17:5993702 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52891 0 0 1 0 1 exosome 0.500231643921093 0.50023164394097 0.7206992 0 hm5C_site_48243 DeepMRMD:0.7206992;iRNA_m5C:0 48244 chr20 36028594 36028594 1 + G T LUAD 36028592 + 36028572 36028612 41 TGTCTCCAGAGGCCTTCCTGCAGGAGGCCCAGGTCATGAAG TGTCTCCAGAGGCCTTCCTGCATGAGGCCCAGGTCATGAAG < 41bp 0.812266032932634 0.485921769352066 0.9114373 0.39563906 prediction 0.624532065865268 Functional Loss - SRC ENSG00000197122 CDS Human protein_coding chr20:36028592 chr20:36028594 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_52892 0 0 1 0 1 Ribosome 0.500231643921089 0.50023168425047 0.8228746 0 hm5C_site_48244 DeepMRMD:0.8228746;iRNA_m5C:0 48245 chr7 37890021 37890021 1 + G T LUSC 37890019 + 37889999 37890039 41 GCCTGTGGGATGAGATGTTGCAGAACAAAGGCTTAACAGGT GCCTGTGGGATGAGATGTTGCATAACAAAGGCTTAACAGGT < 41bp 0.812253920437449 0.498271722396754 0.21862349 0.043439507 prediction 0.624507840874897 Functional Loss - NME8 ENSG00000086288 CDS Human protein_coding chr7:37890019 chr7:37890021 nonsynonymous SNV 0.989 1 23 hm5C_associated_SNPs_52893 0 0 0 0 2 exosome 0.500231643991755 0.500231643919335 0 1.44839917837203e-10 hm5C_site_48245 DeepMRMD:0;iRNA_m5C:1.44839917837203e-10 48246 chr15 40564701 40564701 1 + G T LUAD 40564699 + 40564679 40564719 41 GGTTGCCAAGGGTGCCCTGGCTGGTGAGGACACAGGTGTTG GGTTGCCAAGGGTGCCCTGGCTTGTGAGGACACAGGTGTTG < 41bp 0.826922657151857 0.514670627758011 0.33647078 0.12496647 prediction 0.624504058787692 Functional Loss - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40564699 chr15:40564701 nonsynonymous SNV 0.338 1 23 hm5C_associated_SNPs_52894 0 0 0 0 0 unknown 0.500231643729263 0.500231643921091 0 0 hm5C_site_48246 DeepMRMD:0;iRNA_m5C:0 48247 chr8 120431488 120431488 1 + G T LUAD 120431486 + 120431466 120431506 41 TGTGGTATGGGGTTCTCCACCCGGGTCACCAATAGGAACCG TGTGGTATGGGGTTCTCCACCCTGGTCACCAATAGGAACCG < 41bp 0.817066317228286 0.50481648065386 0.93377745 0.28941983 prediction 0.624499673148851 Functional Loss - NOV ENSG00000136999 CDS Human protein_coding chr8:120431486 chr8:120431488 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_52895 0 0 0 0 1 exosome 0.500231611713105 0.500231643921973 0.8675549 0 hm5C_site_48247 DeepMRMD:0.8675549;iRNA_m5C:0 48248 chr11 94731561 94731561 1 + G T LUAD 94731559 + 94731539 94731579 41 CTGTGGAAACGTGGGCAAGACCGGGCAGTTGTGGACCACAT CTGTGGAAACGTGGGCAAGACCTGGCAGTTGTGGACCACAT < 41bp 0.827963329002434 0.515722498342129 0.36751574 0.08115581 prediction 0.62448166132061 Functional Loss - KDM4D ENSG00000186280 CDS Human protein_coding chr11:94731559 chr11:94731561 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_52896 0 0 0 0 0 chromatin 0.500231642685224 0.50023164366374 0 0 hm5C_site_48248 DeepMRMD:0;iRNA_m5C:0 48249 chr14 24644825 24644825 1 + G T UCEC 24644823 + 24644803 24644843 41 CCTGAAGTTCCTACAGAGCCCAGGGAGCCAGGTCAGCAGAG CCTGAAGTTCCTACAGAGCCCATGGAGCCAGGTCAGCAGAG < 41bp 0.836623430522402 0.524395008753341 0.619407 0.0562568 prediction 0.624456843538121 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24644823 chr14:24644825 nonsynonymous SNV 0.361 1 23 hm5C_associated_SNPs_52897 0 0 1 0 2 chromatin 0.500231647167014 0.500231643921096 0.238814 6.49183440337708e-09 hm5C_site_48249 DeepMRMD:0.238814;iRNA_m5C:6.49183440337708e-09 48250 chr7 100866000 100866000 1 + G T LUAD 100865997 + 100865977 100866017 41 AACTTCCAGGATGACCCCCACGCGGGACTCCCTCAGCTCGG AACTTCCAGGATGACCCCCACGCTGGACTCCCTCAGCTCGG < 41bp 0.870061033650829 0.557836428978053 0.5608838 0.091498405 prediction 0.624449209345552 Functional Loss - ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100865997 chr7:100866000 synonymous SNV . 0 24 hm5C_associated_SNPs_52898 0 0 1 0 1 Cytosol 0.500231644570514 0.500231643923199 0.1217676 1.29462929265856e-09 hm5C_site_48250 DeepMRMD:0.1217676;iRNA_m5C:1.29462929265856e-09 48251 chr3 88205447 88205447 1 + G T LUSC 88205444 + 88205424 88205464 41 TTCTTTTTCTCAGCCCCAACCTAGATTCACATGGACTGAAA TTCTTTTTCTCAGCCCCAACCTATATTCACATGGACTGAAA < 41bp 0.851363911972956 0.539168758781031 0.3422097 0.36969316 prediction 0.62439030638385 Functional Loss - C3orf38 ENSG00000179021 CDS Human protein_coding chr3:88205444 chr3:88205447 nonsynonymous SNV 0.975 3 24 hm5C_associated_SNPs_52899 0 0 1 0 0 exosome 0.500231643028343 0.500233176961666 0 0 hm5C_site_48251 DeepMRMD:0;iRNA_m5C:0 48252 chr17 48655651 48655651 1 + G T THCA 48655648 + 48655628 48655668 41 CTACTGTGCCCGGGCCGGGGCAGGGGAGGTGGAGCTCGCCG CTACTGTGCCCGGGCCGGGGCAGTGGAGGTGGAGCTCGCCG < 41bp 0.825242006926421 0.513049206287604 0.8921331 0.605381 prediction 0.624385601277635 Functional Loss - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48655648 chr17:48655651 nonsynonymous SNV 0.384 3 24 hm5C_associated_SNPs_52900 0 0 0 0 0 exosome 0.500231616996069 0.500231644452016 0.5735042 0 hm5C_site_48252 DeepMRMD:0.5735042;iRNA_m5C:0 48253 chr16 27460410 27460410 1 + G T UCEC 27460408 + 27460388 27460428 41 CCGGTCACCTGGAGGGGTCTCAGAGAGTGAGGCGGGCTCAC CCGGTCACCTGGAGGGGTCTCATAGAGTGAGGCGGGCTCAC < 41bp 0.81218484476387 0.494274700252274 0.94203305 0.9322206 prediction 0.624369689527739 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27460408 chr16:27460410 stopgain 0.411 0 23 hm5C_associated_SNPs_52901 0 0 0 0 0 nucleus 0.500231643921124 0.500231873451706 0.0196249000000002 0 hm5C_site_48253 DeepMRMD:0.0196249000000002;iRNA_m5C:0 48254 chr7 110763258 110763258 1 + G T UCEC 110763255 + 110763235 110763275 41 TGTCCGAACTGAGCAACTTACAAGAACTCTATATTAATCAC TGTCCGAACTGAGCAACTTACAATAACTCTATATTAATCAC < 41bp 0.854899090825905 0.542727887955941 0.12184143 0.13115776 prediction 0.624342405739928 Functional Loss - LRRN3 ENSG00000173114 CDS Human protein_coding chr7:110763255 chr7:110763258 stopgain 1.000 1 24 hm5C_associated_SNPs_52902 0 0 0 0 0 chromatin 0.500231644375845 0.500231643923468 0 9.04754937636199e-10 hm5C_site_48254 DeepMRMD:0;iRNA_m5C:9.04754937636199e-10 48255 chr15 74219546 74219546 1 + G T rs1048661 74219543 + 74219523 74219563 41 CGGGGACAGCACGGGCATGGCCCGGGCCCGCACCTCCGTCT CGGGGACAGCACGGGCATGGCCCTGGCCCGCACCTCCGTCT < 41bp 0.872491520833034 0.560338333988209 0.7924528 0.41461456 prediction 0.62430637368965 Functional Loss - LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74219543 chr15:74219546 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_52903 1 1 0 0 0 exosome 0.500231644014883 0.500231643921092 0.5849056 1.87580839750012e-10 hm5C_site_48255 DeepMRMD:0.5849056;iRNA_m5C:1.87580839750012e-10 Exfoliation syndrome, susceptibility to Exfoliation syndrome, susceptibility to 48256 chr9 98678548 98678548 1 + G T UCEC 98678545 + 98678525 98678565 41 TTAGGGAGTGGGACCTACTTCAAGAAGCAGTTTTCTGACCC TTAGGGAGTGGGACCTACTTCAATAAGCAGTTTTCTGACCC < 41bp 0.862272147336091 0.550128113918376 0.66529834 0.18727937 prediction 0.624288066835429 Functional Loss - ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98678545 chr9:98678548 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_52904 0 0 1 0 1 Nucleus 0.500231643921006 0.500231643921092 0.33059668 0 hm5C_site_48256 DeepMRMD:0.33059668;iRNA_m5C:0 48257 chr10 72434641 72434641 1 + G T BLCA 72434638 + 72434618 72434658 41 CAGGATCCTCAGTGGAGTGGCAGGAGGATTTTCGGGAGCTG CAGGATCCTCAGTGGAGTGGCAGTAGGATTTTCGGGAGCTG < 41bp 0.812139867899602 0.433449480076369 0.87536025 0.61717504 prediction 0.624279735799204 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72434638 chr10:72434641 stopgain 1.000 1 24 hm5C_associated_SNPs_52905 0 0 1 0 0 chromatin 0.500231644491316 0.500231643920771 0.51637042 1.14109077742341e-09 hm5C_site_48257 DeepMRMD:0.51637042;iRNA_m5C:1.14109077742341e-09 48258 chr20 62521335 62521335 1 + A C rs41278202 62521331 + 62521311 62521351 41 TTCACCCGCTGCAGAGCACACGCAACCCAGCCTCAGCATCA TTCACCCGCTGCAGAGCACACGCACCCCAGCCTCAGCATCA < 41bp 0.812133209365418 0.453824427555591 0.099044204 0.039917707 prediction 0.624266418730836 Functional Loss - TPD52L2 ENSG00000101150 UTR3 Human protein_coding chr20:62521331 chr20:62521335 . 0.000 0 25 hm5C_associated_SNPs_52906 0 0 1 1 0 Ribosome 0.500231641387664 0.50023165157874 0 0 hm5C_site_48258 DeepMRMD:0;iRNA_m5C:0 48259 chr1 87025960 87025960 1 + G T UCEC 87025958 + 87025938 87025978 41 ACCATACACCAAGCAGTTCACAGAATGTGGAGAGAAAGGCG ACCATACACCAAGCAGTTCACATAATGTGGAGAGAAAGGCG < 41bp 0.812131459962799 0.498436714389291 0.18579039 0.053085357 prediction 0.624262919925597 Functional Loss - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87025958 chr1:87025960 stopgain 0.940 0 23 hm5C_associated_SNPs_52907 0 0 0 0 2 unknown 0.500231643921411 0.50023157370732 0 1.40428181971686e-07 hm5C_site_48259 DeepMRMD:0;iRNA_m5C:1.40428181971686e-07 48260 chr15 99796216 99796216 1 + G T COAD 99796213 + 99796193 99796233 41 GTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTA GTGGCAAGGCTAGAAAAGCACAATAATTTGTTCTTAAATTA < 41bp 0.812126300734531 0.464560262873054 0.1693157 0.12591475 prediction 0.624252601469061 Functional Loss - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99796213 chr15:99796216 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_52908 0 0 0 3 0 Cytosol 0.50023164384792 0.500231643921319 0 0 hm5C_site_48260 DeepMRMD:0;iRNA_m5C:0 48261 chr17 47656507 47656507 1 + G T HNSC 47656504 + 47656484 47656524 41 ACCCAGCCAAGATCTGCTCCCGAGACCACGCTCAGAGCTCA ACCCAGCCAAGATCTGCTCCCGATACCACGCTCAGAGCTCA < 41bp 0.812120818158437 0.447642666884465 0.48336613 0.08475444 prediction 0.624241636316875 Functional Loss - NXPH3 ENSG00000182575 CDS Human protein_coding chr17:47656504 chr17:47656507 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_52909 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643856261 0 1.29663169090577e-10 hm5C_site_48261 DeepMRMD:0;iRNA_m5C:1.29663169090577e-10 48262 chr16 67201447 67201447 1 + G T UCEC 67201445 + 67201425 67201465 41 CCCCATCATCTCTGACATCCCAGAAGACTCTCCATCCCCTG CCCCATCATCTCTGACATCCCATAAGACTCTCCATCCCCTG < 41bp 0.812105977147413 0.485200008875941 0.3722976 0.026865572 prediction 0.624211954294826 Functional Loss - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67201445 chr16:67201447 stopgain 0.996 0 23 hm5C_associated_SNPs_52910 0 0 1 0 3 Cytosol 0.500231643921096 0.500231643921158 0 0 hm5C_site_48262 DeepMRMD:0;iRNA_m5C:0 48263 chr8 56910944 56910944 1 + A C BLCA 56910940 + 56910920 56910960 41 GCATACATCGAGCGGAAGAACTACATTCACCGGGACCTGCG GCATACATCGAGCGGAAGAACTACCTTCACCGGGACCTGCG < 41bp 0.812104661729877 0.397094093711082 0.91822445 0.3778673 prediction 0.624209323459753 Functional Loss - LYN ENSG00000254087 CDS Human protein_coding chr8:56910940 chr8:56910944 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_52911 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921093 0.8364489 0 hm5C_site_48263 DeepMRMD:0.8364489;iRNA_m5C:0 48264 chr14 24620821 24620821 1 + A T rs149481717 24620817 + 24620797 24620837 41 GCCAACGCCTAGAGCCCTTCCGCCAGCGCCTCTGGGACAGT GCCAACGCCTAGAGCCCTTCCGCCTGCGCCTCTGGGACAGT < 41bp 0.81209343930329 0.48717174274848 0.32214558 0.20064431 prediction 0.624186878606581 Functional Loss - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24620817 chr14:24620821 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_52912 0 0 1 0 1 Ribosome 0.500231645784341 0.500231645387799 0 7.93082266525857e-10 hm5C_site_48264 DeepMRMD:0;iRNA_m5C:7.93082266525857e-10 48265 chr6 112671390 112671390 1 + G T LUSC 112671388 + 112671368 112671408 41 GAGAGGTGAAGTCATGGTCCCTGGGCGTCTGCAAGGAGCCG GAGAGGTGAAGTCATGGTCCCTTGGCGTCTGCAAGGAGCCG < 41bp 0.829617461770366 0.517527429506457 0.33759153 0.06985438 prediction 0.624180064527819 Functional Loss - RFPL4B ENSG00000251258 CDS Human protein_coding chr6:112671388 chr6:112671390 synonymous SNV . 0 23 hm5C_associated_SNPs_52913 0 0 1 0 0 unknown 0.500231649318422 0.500231643929842 0 1.0777160497355e-08 hm5C_site_48265 DeepMRMD:0;iRNA_m5C:1.0777160497355e-08 48266 chr19 12298356 12298356 1 + G T LUAD 12298353 + 12298333 12298373 41 AAGACACATGATAAAACATACTGGAGAAGGACCTTATAAAT AAGACACATGATAAAACATACTGTAGAAGGACCTTATAAAT < 41bp 0.837505304661366 0.525417998988172 0.29468757 0.06494552 prediction 0.624174611346388 Functional Loss - ZNF136 ENSG00000196646 CDS Human protein_coding chr19:12298353 chr19:12298356 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_52914 0 0 1 0 0 insoluble cytoplasm 0.500246100589773 0.500231643975785 0 2.89132279762683e-05 hm5C_site_48266 DeepMRMD:0;iRNA_m5C:2.89132279762683e-05 48267 chr2 219603604 219603604 1 + G T LUAD 219603601 + 219603581 219603621 41 ATCGGTCAGGCGGGTCCTCCCTGGTGCCTCAGATACCTTGG ATCGGTCAGGCGGGTCCTCCCTGTTGCCTCAGATACCTTGG < 41bp 0.812086326293339 0.433386402193665 0.44005752 0.29495138 prediction 0.624172652586678 Functional Loss - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219603601 chr2:219603604 nonsynonymous SNV 0.146 1 24 hm5C_associated_SNPs_52915 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_48267 DeepMRMD:0;iRNA_m5C:0 48268 chr15 64737223 64737223 1 + G T READ 64737220 + 64737200 64737240 41 CACAGTTTCCAGACATCAGTCAAGAGTCTGATTCTCCATTT CACAGTTTCCAGACATCAGTCAATAGTCTGATTCTCCATTT < 41bp 0.812074542700046 0.468023361155819 0.219434 0.05316201 prediction 0.624149085400093 Functional Loss - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64737220 chr15:64737223 stopgain 1.000 1 24 hm5C_associated_SNPs_52916 0 0 0 0 2 Ribosome 0.500231643921132 0.500231643921091 0 8.23785484271866e-14 hm5C_site_48268 DeepMRMD:0;iRNA_m5C:8.23785484271866e-14 48269 chr6 161143527 161143527 1 + G T HNSC 161143524 + 161143504 161143544 41 CACATCCTCCACCACCACCACAGGAAAGAAGTGTCAGTCTT CACATCCTCCACCACCACCACAGTAAAGAAGTGTCAGTCTT < 41bp 0.81206554232632 0.435425297369911 0.24874249 0.120878726 prediction 0.62413108465264 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161143524 chr6:161143527 nonsynonymous SNV 0.466 3 24 hm5C_associated_SNPs_52917 0 0 0 0 2 exosome 0.500231643973538 0.500272547384639 0 0 hm5C_site_48269 DeepMRMD:0;iRNA_m5C:0 48270 chr20 36776476 36776476 1 + G T UCEC 36776473 + 36776453 36776493 41 TAGAAGGATCAGGCAGATGTCTAGGATCCCATCTTCAAACT TAGAAGGATCAGGCAGATGTCTATGATCCCATCTTCAAACT < 41bp 0.812060053591516 0.472625959406792 0.26739663 0.05134377 prediction 0.624120107183033 Functional Loss - TGM2 ENSG00000198959 CDS Human protein_coding chr20:36776473 chr20:36776476 nonsynonymous SNV 0.985 1 24 hm5C_associated_SNPs_52918 0 0 0 0 0 Cytosol 0.500231643921374 0.50023171249673 0 0 hm5C_site_48270 DeepMRMD:0;iRNA_m5C:0 48271 chr1 90473240 90473240 1 + A C LGG 90473236 + 90473216 90473256 41 GAGAGGAACGCCTGCTTATCCTGAAAGTACGTTTGGAAGCA GAGAGGAACGCCTGCTTATCCTGACAGTACGTTTGGAAGCA < 41bp 0.889375943143369 0.577323164169096 0.18369466 0.13290328 prediction 0.624105557948547 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90473236 chr1:90473240 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_52919 0 0 1 0 2 Cytosol 0.500231643921094 0.500231643929336 0 0 hm5C_site_48271 DeepMRMD:0;iRNA_m5C:0 48272 chr4 70921236 70921236 1 + G T COAD 70921233 + 70921213 70921253 41 AGGAAAAGCATCATTCACATCGAGAATTTCCATTTTATGGG AGGAAAAGCATCATTCACATCGATAATTTCCATTTTATGGG < 41bp 0.812050198330222 0.481106667779804 0.206653 0.13986534 prediction 0.624100396660443 Functional Loss - HTN1 ENSG00000126550 CDS Human protein_coding chr4:70921233 chr4:70921236 stopgain 0.001 0 24 hm5C_associated_SNPs_52920 0 0 0 0 2 unknown 0.50023164032034 0.500231420216621 0 4.4020743605877e-07 hm5C_site_48272 DeepMRMD:0;iRNA_m5C:4.4020743605877e-07 48273 chr5 139192997 139192997 1 + G T LUAD 139192994 + 139192974 139193014 41 GGGGCACCCAGTACAGCAGCCTCGACTCCCTAGACGGGCTG GGGGCACCCAGTACAGCAGCCTCTACTCCCTAGACGGGCTG < 41bp 0.812047885595464 0.451361916317449 0.701819 0.6908252 prediction 0.624095771190928 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139192994 chr5:139192997 nonsynonymous SNV 0.210 4 24 hm5C_associated_SNPs_52921 0 0 0 0 0 exosome 0.500231643923633 0.500231643921087 0.0219875999999999 5.09059461251127e-12 hm5C_site_48273 DeepMRMD:0.0219875999999999;iRNA_m5C:5.09059461251127e-12 48274 chr16 27460161 27460161 1 + T G STAD 27460165 - 27460145 27460185 41 GGTAGCCGTCATCCTCACAGCTGCAGGGCCAGGTGCATGGC GGTAGCCGTCATCCTCACAGCTGCCGGGCCAGGTGCATGGC < 41bp 0.897658351376957 0.585626107849531 0.17913231 0.1316086 prediction 0.624064487054854 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27460165 chr16:27460161 nonsynonymous SNV 0.954 2 25 hm5C_associated_SNPs_52922 0 0 0 0 0 nucleus 0.50023164392077 0.500231643921092 0 0 hm5C_site_48274 DeepMRMD:0;iRNA_m5C:0 48275 chr11 93862493 93862493 1 + A C rs1138800 93862489 + 93862469 93862509 41 CGCCGCAGCCATGGCCATCGCTCAACTGGCCACGGAGTACG CGCCGCAGCCATGGCCATCGCTCACCTGGCCACGGAGTACG < 41bp 0.890788177979676 0.578760011973209 0.29694724 0.15333712 prediction 0.624056332012934 Functional Loss - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93862489 chr11:93862493 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_52923 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_48275 DeepMRMD:0;iRNA_m5C:0 48276 chr11 33083215 33083215 1 + G T UCEC 33083213 + 33083193 33083233 41 GGCTGAGCCCTGTTGCTGTCCAGAATTACGCTTACCTGAAG GGCTGAGCCCTGTTGCTGTCCATAATTACGCTTACCTGAAG < 41bp 0.827713262646588 0.515694913372591 0.25040603 0.05939603 prediction 0.624036698547995 Functional Loss - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33083213 chr11:33083215 nonsynonymous SNV 0.373 1 23 hm5C_associated_SNPs_52924 0 0 0 0 1 Ribosome 0.500231644027322 0.500207848237857 0 4.75915789288628e-05 hm5C_site_48276 DeepMRMD:0;iRNA_m5C:4.75915789288628e-05 48277 chr2 64839984 64839984 1 + G T rs6546090 64839981 + 64839961 64840001 41 TGACCATATTCTTTCAACTTCAGGAGCAACAGCACCTGGAG TGACCATATTCTTTCAACTTCAGTAGCAACAGCACCTGGAG < 41bp 0.818404530507779 0.506403962572121 0.91981006 0.5076754 prediction 0.624001135871316 Functional Loss - LOC339807 ENSG00000233694 ncRNA_exonic Human lincRNA chr2:64839981 chr2:64839984 . . 0 24 hm5C_associated_SNPs_52925 0 1 0 0 1 unknown 0.500231705902215 0.50023164406248 0.82426932 1.23679469554716e-07 hm5C_site_48277 DeepMRMD:0.82426932;iRNA_m5C:1.23679469554716e-07 48278 chr1 171753159 171753159 1 + G T BRCA 171753157 + 171753137 171753177 41 ACAGGTGGACAGGATGCTGGCTGAGGTTGGCCGTGTCCTGC ACAGGTGGACAGGATGCTGGCTTAGGTTGGCCGTGTCCTGC < 41bp 0.827407029113371 0.515408970352483 0.48272428 0.3884073 prediction 0.623996117521777 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171753157 chr1:171753159 stopgain 1.000 1 23 hm5C_associated_SNPs_52926 0 0 1 0 1 Ribosome 0.500231644102062 0.500231643916784 0 3.70555808260065e-10 hm5C_site_48278 DeepMRMD:0;iRNA_m5C:3.70555808260065e-10 48279 chr2 95945716 95945716 1 + G T UCEC 95945713 + 95945693 95945733 41 GACCCCAGCCACCCAGAAGCCAAGGGCGAGGCTGGAGCCCG GACCCCAGCCACCCAGAAGCCAATGGCGAGGCTGGAGCCCG < 41bp 0.876415772899144 0.564440619310491 0.901821 0.44934607 prediction 0.623950307177306 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95945713 chr2:95945716 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_52927 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.803642 0 hm5C_site_48279 DeepMRMD:0.803642;iRNA_m5C:0 48280 chr22 51009848 51009848 1 + G T UCEC 51009845 + 51009825 51009865 41 CGCGATCTGCACAAAGGCATCAGGGCTGGTCCGGCACTTCT CGCGATCTGCACAAAGGCATCAGTGCTGGTCCGGCACTTCT < 41bp 0.811965663492328 0.443124637378534 0.89630747 0.3157553 prediction 0.623931326984656 Functional Loss - CPT1B ENSG00000205560 CDS Human protein_coding chr22:51009845 chr22:51009848 nonsynonymous SNV 0.701 5 24 hm5C_associated_SNPs_52928 0 0 1 0 0 nucleolus 0.500231643921087 0.500231605986083 0.79261494 7.5870009608181e-08 hm5C_site_48280 DeepMRMD:0.79261494;iRNA_m5C:7.5870009608181e-08 48281 chr20 1224774 1224774 1 + A C rs17717241 1224770 + 1224750 1224790 41 AGGATGTGATTGGTGGATCTCAGCATAGCTCTCATGAGGAT AGGATGTGATTGGTGGATCTCAGCCTAGCTCTCATGAGGAT < 41bp 0.811965476196079 0.426978950770963 0.29847002 0.19123906 prediction 0.623930952392157 Functional Loss - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1224770 chr20:1224774 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_52929 0 0 0 0 2 chromatin 0.500230817717727 0.500231643921499 0 0 hm5C_site_48281 DeepMRMD:0;iRNA_m5C:0 48282 chr12 8925972 8925972 1 + G T UCEC 8925970 + 8925950 8925990 41 AAGGGAAGCAGCTAGCTATCCAGGTGTCTAATATCCTGGGG AAGGGAAGCAGCTAGCTATCCATGTGTCTAATATCCTGGGG < 41bp 0.811958956860207 0.498855543670204 0.9189295 0.38947397 prediction 0.623917913720414 Functional Loss - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8925970 chr12:8925972 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_52930 0 0 1 0 2 chromatin 0.500231643922021 0.500231643929365 0.837859 0 hm5C_site_48282 DeepMRMD:0.837859;iRNA_m5C:0 48283 chr20 30371571 30371571 1 + G T UCEC 30371568 + 30371548 30371588 41 GAAGGTGGGCCCATCTTGCCCAAGAAACCACCTGTGAAACC GAAGGTGGGCCCATCTTGCCCAATAAACCACCTGTGAAACC < 41bp 0.811954451808597 0.437171868174324 0.24312237 0.07387063 prediction 0.623908903617193 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30371568 chr20:30371571 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_52931 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_48283 DeepMRMD:0;iRNA_m5C:0 48284 chr3 119328423 119328423 1 + G T UCEC 119328421 + 119328401 119328441 41 AGGCCAGCTGGGACAGATCACAGGTAACATTCCTCCCTGCC AGGCCAGCTGGGACAGATCACATGTAACATTCCTCCCTGCC < 41bp 0.830922291423779 0.518969510370677 0.8639488 0.34161946 prediction 0.623905562106204 Functional Loss - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119328421 chr3:119328423 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_52932 0 0 0 0 1 exosome 0.500231634024563 0.500231645405675 0.7278976 0 hm5C_site_48284 DeepMRMD:0.7278976;iRNA_m5C:0 48285 chr21 43852292 43852292 1 + G T UCEC 43852290 + 43852270 43852310 41 TCTTCGGGAAGGCATGGCTGCAGCAATGCTCCACTCCTGAT TCTTCGGGAAGGCATGGCTGCATCAATGCTCCACTCCTGAT < 41bp 0.811948577511328 0.49226119182448 0.269637 0.16903952 prediction 0.623897155022656 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43852290 chr21:43852292 nonsynonymous SNV 0.853 0 23 hm5C_associated_SNPs_52933 0 0 0 0 2 exosome 0.500231643921173 0.500231643923098 0 0 hm5C_site_48285 DeepMRMD:0;iRNA_m5C:0 48286 chr7 150094380 150094380 1 + G T LUAD 150094378 + 150094358 150094398 41 CGGGGCCCGGGCCGCGGTCTCCGGCCCCGAGGGGCCGGGCG CGGGGCCCGGGCCGCGGTCTCCTGCCCCGAGGGGCCGGGCG < 41bp 0.827126376952962 0.515184466356162 0.875981 0.12999937 prediction 0.6238838211936 Functional Loss - ZNF775 ENSG00000196456 CDS Human protein_coding chr7:150094378 chr7:150094380 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52934 0 0 0 0 0 Cytosol 0.500267716597582 0.500231687733509 0.751962 7.20577281463353e-05 hm5C_site_48286 DeepMRMD:0.751962;iRNA_m5C:7.20577281463353e-05 48287 chr11 61253281 61253281 1 + G T LUAD 61253279 + 61253259 61253299 41 TTTCTTTTGCAGATTTCTTGCAGAAGAAATCGATCGGCGCA TTTCTTTTGCAGATTTCTTGCATAAGAAATCGATCGGCGCA < 41bp 0.826431951965013 0.514493687395252 0.90167415 0.27545142 prediction 0.623876529139521 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61253279 chr11:61253281 nonsynonymous SNV 0.905 2 23 hm5C_associated_SNPs_52935 0 0 0 0 1 exosome 0.500231643889829 0.500231666055654 0.8033483 0 hm5C_site_48287 DeepMRMD:0.8033483;iRNA_m5C:0 48288 chr4 151505070 151505070 1 + G T STAD 151505067 + 151505047 151505087 41 CGGACTGGGACGAGTCGTGCCTGGGCGACCGGCTCAACGGC CGGACTGGGACGAGTCGTGCCTGTGCGACCGGCTCAACGGC < 41bp 0.873764707027397 0.561836171167294 0.19254512 0.008518487 prediction 0.623857071720205 Functional Loss - MAB21L2 ENSG00000181541 CDS Human protein_coding chr4:151505067 chr4:151505070 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_52936 0 0 1 0 0 nucleus 0.50023163861034 0.500231482670306 0 3.11880067327408e-07 hm5C_site_48288 DeepMRMD:0;iRNA_m5C:3.11880067327408e-07 48289 chr12 113535160 113535160 1 + A C rs76690357 113535156 + 113535136 113535176 41 TTGCATCTGTACAGCCTTGTCTGCAAACTGGAGGATGCGGG TTGCATCTGTACAGCCTTGTCTGCCAACTGGAGGATGCGGG < 41bp 0.811924480312437 0.443139807740543 0.77642214 0.13989332 prediction 0.623848960624874 Functional Loss - DTX1 ENSG00000135144 UTR3 Human protein_coding chr12:113535156 chr12:113535160 . . 0 25 hm5C_associated_SNPs_52937 0 0 0 0 0 Endoplasmic reticulum 0.50023164438807 0.500231643922146 0.55284428 9.31849264418361e-10 hm5C_site_48289 DeepMRMD:0.55284428;iRNA_m5C:9.31849264418361e-10 48290 chr11 36484115 36484115 1 + G T rs34680620 36484113 + 36484093 36484133 41 CCACCATGATGCACTCGGGCCTGGGGGAGGAGGCCAGCAGT CCACCATGATGCACTCGGGCCTTGGGGAGGAGGCCAGCAGT < 41bp 0.81555455940945 0.503632206645664 0.7197886 0.4511731 prediction 0.623844705527571 Functional Loss - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36484113 chr11:36484115 synonymous SNV . 0 23 hm5C_associated_SNPs_52938 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.4395772 0 hm5C_site_48290 DeepMRMD:0.4395772;iRNA_m5C:0 48291 chr14 24529434 24529434 1 + G T COAD 24529432 + 24529412 24529452 41 AGGAGCAGGCCTTCAGGTTGCAGCAGGGCCTGGTGACCAGC AGGAGCAGGCCTTCAGGTTGCATCAGGGCCTGGTGACCAGC < 41bp 0.821602938433326 0.509690805056439 0.43251336 0.38404012 prediction 0.623824266753773 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24529432 chr14:24529434 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_52939 0 0 0 0 2 Endoplasmic reticulum 0.500231375010943 0.500231567713917 0 0 hm5C_site_48291 DeepMRMD:0;iRNA_m5C:0 48292 chr5 67592111 67592111 1 + G T UCEC 67592108 + 67592088 67592128 41 AAAACCTGTTGCGAGGGAAGCGAGATGGCACTTTTCTTGTC AAAACCTGTTGCGAGGGAAGCGATATGGCACTTTTCTTGTC < 41bp 0.851850840160309 0.539940836116861 0.8980267 0.5892294 prediction 0.623820008086896 Functional Loss - PIK3R1 ENSG00000145675 CDS Human protein_coding chr5:67592108 chr5:67592111 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_52940 0 0 1 0 0 Nucleus 0.500231643921092 0.500231647568992 0.6175946 0 hm5C_site_48292 DeepMRMD:0.6175946;iRNA_m5C:0 48293 chr3 183887980 183887980 1 + G T LUAD 183887978 + 183887958 183887998 41 GAGCTGGGCTACAGCTACGGCGGGGGCAGCGCCAGCAGTCA GAGCTGGGCTACAGCTACGGCGTGGGCAGCGCCAGCAGTCA < 41bp 0.827240403050895 0.515330416324834 0.88961715 0.17886665 prediction 0.623819973452121 Functional Loss - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183887978 chr3:183887980 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_52941 0 0 1 0 1 Cytosol 0.50023164391864 0.500231645276471 0.7792343 0 hm5C_site_48293 DeepMRMD:0.7792343;iRNA_m5C:0 48294 chr9 131285000 131285000 1 + G T THCA 131284997 + 131284977 131285017 41 GAGAGGAAGGTGCAAGCCCTCTCGGAGATGGCATCTGAACA GAGAGGAAGGTGCAAGCCCTCTCTGAGATGGCATCTGAACA < 41bp 0.811903245804436 0.453850271179177 0.32934445 0.2923317 prediction 0.623806491608871 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131284997 chr9:131285000 synonymous SNV . 0 24 hm5C_associated_SNPs_52942 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921066 0 5.37347943918576e-14 hm5C_site_48294 DeepMRMD:0;iRNA_m5C:5.37347943918576e-14 48295 chr11 117152800 117152800 1 + G T COAD 117152798 + 117152778 117152818 41 CCCCTTCCTGGCTCCCATGGCAGAAATAGCCCTGGCTTGGG CCCCTTCCTGGCTCCCATGGCATAAATAGCCCTGGCTTGGG < 41bp 0.830165845900401 0.518285474431314 0.2302419 0.023203254 prediction 0.623760742938173 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152798 chr11:117152800 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_52943 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_48295 DeepMRMD:0;iRNA_m5C:0 48296 chr7 100210480 100210480 1 + G T LUSC 100210477 + 100210457 100210497 41 GGGCCCCCTGGGCGGGGGTCCCGGGGCGCCCCTCCTCCCTT GGGCCCCCTGGGCGGGGGTCCCGTGGCGCCCCTCCTCCCTT < 41bp 0.874725277753462 0.56284548143838 0.94365263 0.8142153 prediction 0.623759592630165 Functional Loss - MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100210477 chr7:100210480 synonymous SNV . 0 24 hm5C_associated_SNPs_52944 0 0 0 0 0 Cytosol 0.500231643920475 0.500231643883265 0.25887466 7.44206918312784e-11 hm5C_site_48296 DeepMRMD:0.25887466;iRNA_m5C:7.44206918312784e-11 48297 chr16 27448852 27448852 1 + A T LIHC 27448848 + 27448828 27448868 41 CTGAAGGACGAGGCCACCTCCTGCAGCCTCCACAGGTCGGC CTGAAGGACGAGGCCACCTCCTGCTGCCTCCACAGGTCGGC < 41bp 0.824225401779397 0.512347370242075 0.24825883 0.11316925 prediction 0.623756063074642 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27448848 chr16:27448852 nonsynonymous SNV 0.965 4 25 hm5C_associated_SNPs_52945 0 0 0 0 1 nucleus 0.500231810033945 0.500231659600079 0 3.0086773183946e-07 hm5C_site_48297 DeepMRMD:0;iRNA_m5C:3.0086773183946e-07 48298 chr11 63719960 63719960 1 + G T LUSC 63719957 + 63719937 63719977 41 GACCGAGCCTGGTACCTCATCGCGTGGGAAAACAGCTCCGT GACCGAGCCTGGTACCTCATCGCTTGGGAAAACAGCTCCGT < 41bp 0.811876267788845 0.430353203509855 0.56567657 0.13541627 prediction 0.623752535577691 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63719957 chr11:63719960 synonymous SNV . 0 24 hm5C_associated_SNPs_52946 0 0 1 0 2 Ribosome 0.50023164391964 0.500231643929609 0.13135314 0 hm5C_site_48298 DeepMRMD:0.13135314;iRNA_m5C:0 48299 chr19 36164441 36164441 1 + G T UCEC 36164438 + 36164418 36164458 41 ACCCGCCTCTGGGACCGCGTCATGATTGAGGTGGGCGGGGT ACCCGCCTCTGGGACCGCGTCATTATTGAGGTGGGCGGGGT < 41bp 0.868983878064706 0.557124987480561 0.38256678 0.14809564 prediction 0.623717781168291 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36164438 chr19:36164441 nonsynonymous SNV 0.989 5 24 hm5C_associated_SNPs_52947 0 0 0 0 1 exosome 0.500231635064718 0.500231643921092 0 0 hm5C_site_48299 DeepMRMD:0;iRNA_m5C:0 48300 chr1 44437304 44437304 1 + G T LUAD 44437302 + 44437282 44437322 41 GCTGCTCTTGGGGTGGGCACCAGGTCAACCCTTCTCCTCCT GCTGCTCTTGGGGTGGGCACCATGTCAACCCTTCTCCTCCT < 41bp 0.811856667698114 0.482873507034565 0.880387 0.1033552 prediction 0.623713335396228 Functional Loss - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44437302 chr1:44437304 nonsynonymous SNV 0.857 1 23 hm5C_associated_SNPs_52948 0 0 1 0 0 nucleolus 0.500231643819461 0.500231654805641 0.760774 0 hm5C_site_48300 DeepMRMD:0.760774;iRNA_m5C:0 Eosinophil counts 48301 chr5 175793485 175793485 1 + G T LUAD 175793482 + 175793462 175793502 41 CAGGCAAGAGCACGTTCCTGCGCGTGTTGTCGGGGAAGCCA CAGGCAAGAGCACGTTCCTGCGCTTGTTGTCGGGGAAGCCA < 41bp 0.811845010021837 0.437269060482875 0.1826947 0.08692446 prediction 0.623690020043673 Functional Loss - ARL10 ENSG00000175414 CDS Human protein_coding chr5:175793482 chr5:175793485 nonsynonymous SNV 0.799 0 24 hm5C_associated_SNPs_52949 0 0 0 0 1 cytosol 0.500231628463399 0.50023164392113 0 0 hm5C_site_48301 DeepMRMD:0;iRNA_m5C:0 48302 chr1 163039083 163039083 1 + G T UCEC 163039081 + 163039061 163039101 41 AGACAGAGGAGCTGGTACTGCAGAGCGGTCGTCTGATTGGC AGACAGAGGAGCTGGTACTGCATAGCGGTCGTCTGATTGGC < 41bp 0.811832572032389 0.47940683672292 0.55697167 0.35789186 prediction 0.623665144064778 Functional Loss - RGS4 ENSG00000117152 CDS Human protein_coding chr1:163039081 chr1:163039083 stopgain 0.145 0 23 hm5C_associated_SNPs_52950 0 0 0 0 0 exosome 0.50023559450719 0.500354731105771 0.11394334 0 hm5C_site_48302 DeepMRMD:0.11394334;iRNA_m5C:0 48303 chr2 206580979 206580979 1 + G T LUAD 206580977 + 206580957 206580997 41 GCAGACCTCCTGGGCAAACACTGTGGGAACATCGCCCCGCC GCAGACCTCCTGGGCAAACACTTTGGGAACATCGCCCCGCC < 41bp 0.821139311006254 0.509310801265291 0.8246975 0.28265846 prediction 0.623657019481926 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206580977 chr2:206580979 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52951 0 0 1 0 1 Nucleus 0.500231643921108 0.500231643921361 0.649395 0 hm5C_site_48303 DeepMRMD:0.649395;iRNA_m5C:0 48304 chr10 99520365 99520365 1 + A C rs1047537 99520361 + 99520341 99520381 41 ATGAGGGGGCTGAGAGGTTTCTACACTCGAGGAGCAGGGGT ATGAGGGGGCTGAGAGGTTTCTACCCTCGAGGAGCAGGGGT < 41bp 0.87549088847703 0.563667279371771 0.823815 0.22676337 prediction 0.623647218210518 Functional Loss - ZFYVE27 ENSG00000155256 UTR3 Human protein_coding chr10:99520361 chr10:99520365 . . 0 25 hm5C_associated_SNPs_52952 1 0 1 0 0 Ribosome 0.500231643921127 0.500231643925489 0.64763 0 hm5C_site_48304 DeepMRMD:0.64763;iRNA_m5C:0 Spastic Paraplegia, Dominant Spastic Paraplegia, Dominant 48305 chr4 141300287 141300287 1 + G T COAD 141300284 + 141300264 141300304 41 TCTTATTGTAGACCATTCCTCAAGAATTTTGTATCCAAGGC TCTTATTGTAGACCATTCCTCAATAATTTTGTATCCAAGGC < 41bp 0.811811201358169 0.471932844423115 0.28140092 0.11953077 prediction 0.623622402716339 Functional Loss - SCOC ENSG00000153130 CDS Human protein_coding chr4:141300284 chr4:141300287 nonsynonymous SNV 0.018 2 24 hm5C_associated_SNPs_52953 0 0 1 0 2 Ribosome 0.500231565956555 0.500231642160726 0 0 hm5C_site_48305 DeepMRMD:0;iRNA_m5C:0 Multiple complex diseases 48306 chr9 100405549 100405549 1 + G T UCEC 100405546 + 100405526 100405566 41 TTAGTTGGACTACTGAATGCCAGGAATTACAATTTTGGTGG TTAGTTGGACTACTGAATGCCAGTAATTACAATTTTGGTGG < 41bp 0.811807750461877 0.460158769830803 0.47955495 0.069818646 prediction 0.623615500923754 Functional Loss - NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100405546 chr9:100405549 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_52954 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0 8.88178419700125e-16 hm5C_site_48306 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 48307 chr8 56792459 56792459 1 + G T rs572269043 56792456 + 56792436 56792476 41 CCGGCCGTGGCGCCTCCGGGCCAGACGCGCTGCAGCCTCCA CCGGCCGTGGCGCCTCCGGGCCATACGCGCTGCAGCCTCCA < 41bp 0.81847132108695 0.506669067092588 0.6473745 0.4900913 prediction 0.623604507988723 Functional Loss - LYN ENSG00000254087 UTR5 Human protein_coding chr8:56792456 chr8:56792459 . . 0 24 hm5C_associated_SNPs_52955 0 0 1 0 0 Cytosol 0.500231643906646 0.500231643921092 0.294749 0 hm5C_site_48307 DeepMRMD:0.294749;iRNA_m5C:0 48308 chr5 99871249 99871249 1 + G T LUAD 99871247 + 99871227 99871267 41 CGGGAACGATGAAGGCCTCGCAGTGCTGCTGCTGTCTCAGC CGGGAACGATGAAGGCCTCGCATTGCTGCTGCTGTCTCAGC < 41bp 0.811778874392208 0.483095531193371 0.16372854 0.09703648 prediction 0.623557748784416 Functional Loss - FAM174A ENSG00000174132 CDS Human protein_coding chr5:99871247 chr5:99871249 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_52956 0 0 1 0 0 Cytosol 0.500231749424366 0.500231643921158 0 2.11006415007375e-07 hm5C_site_48308 DeepMRMD:0;iRNA_m5C:2.11006415007375e-07 48309 chr12 121855573 121855573 1 + G T BLCA 121855571 + 121855551 121855591 41 ACGACATGGACACAAGCAGTCTGAATTCTTCAAGGTCCCAG ACGACATGGACACAAGCAGTCTTAATTCTTCAAGGTCCCAG < 41bp 0.815832453464731 0.504062002307417 0.030200154 0.017665893 prediction 0.623540902314627 Functional Loss - RNF34 ENSG00000170633 CDS Human protein_coding chr12:121855571 chr12:121855573 synonymous SNV . 0 23 hm5C_associated_SNPs_52957 0 0 1 0 0 chromatin 0.500231583151041 0.500231654292182 0 0 hm5C_site_48309 DeepMRMD:0;iRNA_m5C:0 48310 chr4 1388867 1388867 1 + A C rs76058011 1388863 + 1388843 1388883 41 GTGCCAACGTGGAGTGCCCGCCTGATCACACGTGCCCATGT GTGCCAACGTGGAGTGCCCGCCTGCTCACACGTGCCCATGT < 41bp 0.811769712046865 0.479771232219591 0.09181437 0.13315988 prediction 0.62353942409373 Functional Loss - CRIPAK ENSG00000179979 CDS Human protein_coding chr4:1388863 chr4:1388867 nonsynonymous SNV 0.019 0 25 hm5C_associated_SNPs_52958 0 0 0 0 0 chromatin 0.50023148168975 0.500231663226961 0 0 hm5C_site_48310 DeepMRMD:0;iRNA_m5C:0 48311 chr18 72238438 72238438 1 + G T HNSC 72238436 + 72238416 72238456 41 TGCAGGTGAAATGCAGAGACCAGGATTTTCACTCAGGAACC TGCAGGTGAAATGCAGAGACCATGATTTTCACTCAGGAACC < 41bp 0.811753419080227 0.493260117098434 0.70009875 0.0642817 prediction 0.623506838160453 Functional Loss - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72238436 chr18:72238438 nonsynonymous SNV 0.976 4 23 hm5C_associated_SNPs_52959 0 0 0 0 2 exosome 0.500231643800671 0.500231643919847 0.4001975 0 hm5C_site_48311 DeepMRMD:0.4001975;iRNA_m5C:0 48312 chr15 90784524 90784524 1 + G T UCEC 90784521 + 90784501 90784541 41 CCTGTACAGTTCAACTTCAACAAGATCCGGCCCGGAGAAGT CCTGTACAGTTCAACTTCAACAATATCCGGCCCGGAGAAGT < 41bp 0.811749807964784 0.436242189349413 0.101324916 0.051773578 prediction 0.623499615929568 Functional Loss - GDPGP1 ENSG00000183208 CDS Human protein_coding chr15:90784521 chr15:90784524 nonsynonymous SNV 0.949 3 24 hm5C_associated_SNPs_52960 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643921092 0 0 hm5C_site_48312 DeepMRMD:0;iRNA_m5C:0 48313 chr20 25656223 25656223 1 + C A THCA 25656226 - 25656206 25656246 41 CTTAGACATCAGTGGACACACTCGGGGGAAAGGCCATTTAA CTTAGACATCAGTGGACACACTCTGGGGAAAGGCCATTTAA < 41bp 0.871854609252088 0.560106730240323 0.05224207 0.01762405 prediction 0.623495758023529 Functional Loss - ZNF337 ENSG00000130684 CDS Human protein_coding chr20:25656226 chr20:25656223 synonymous SNV . 0 24 hm5C_associated_SNPs_52961 0 0 1 0 0 Cytosol 0.500231643921092 0.500232043088605 0 0 hm5C_site_48313 DeepMRMD:0;iRNA_m5C:0 48314 chr14 54989231 54989231 1 + G T UCEC 54989228 + 54989208 54989248 41 AGAAGAGACCCAGTTCAGCACAAGAGTTTTCAAAAAGCAAA AGAAGAGACCCAGTTCAGCACAATAGTTTTCAAAAAGCAAA < 41bp 0.811745840333473 0.465245467015734 0.36856127 0.23595726 prediction 0.623491680666945 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:54989228 chr14:54989231 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_52962 0 0 0 1 2 Endoplasmic reticulum 0.500235794747461 0.500231644766335 0 8.29996225193419e-06 hm5C_site_48314 DeepMRMD:0;iRNA_m5C:8.29996225193419e-06 48315 chr19 50926145 50926145 1 + G T LUSC 50926143 + 50926123 50926163 41 CCCCTATGAAGCCTTCGACCCGGCAGCAGCCGCTTTTAGCC CCCCTATGAAGCCTTCGACCCGTCAGCAGCCGCTTTTAGCC < 41bp 0.81611479531059 0.50439347333595 0.82106006 0.08163947 prediction 0.62344264394928 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926143 chr19:50926145 nonsynonymous SNV 0.010 0 23 hm5C_associated_SNPs_52963 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643905724 0.64212012 3.07360803475376e-11 hm5C_site_48315 DeepMRMD:0.64212012;iRNA_m5C:3.07360803475376e-11 Multiple complex diseases 48316 chrX 129054466 129054466 1 + G T SARC 129054463 + 129054443 129054483 41 GTCGTGAAGAAAGGAAAGGCCAAGAAAGCCCTAAAAGAGTT GTCGTGAAGAAAGGAAAGGCCAATAAAGCCCTAAAAGAGTT < 41bp 0.811719862277995 0.448332570596362 0.14029315 0.11213505 prediction 0.62343972455599 Functional Loss - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129054463 chrX:129054466 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_52964 0 0 0 0 2 Cytosol 0.500231652076702 0.500231643934207 0 1.62849906892859e-08 hm5C_site_48316 DeepMRMD:0;iRNA_m5C:1.62849906892859e-08 48317 chr1 203276261 203276261 1 + A C DLBC 203276257 + 203276237 203276277 41 TACAAACACCACTGGTTTCCCGAAAAGCCGTCCAAGGGCTC TACAAACACCACTGGTTTCCCGAACAGCCGTCCAAGGGCTC < 41bp 0.811717213971854 0.434414739987414 0.13181484 0.09700796 prediction 0.623434427943707 Functional Loss - BTG2 ENSG00000159388 CDS Human protein_coding chr1:203276257 chr1:203276261 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_52965 0 0 1 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48317 DeepMRMD:0;iRNA_m5C:0 48318 chr19 14161638 14161638 1 + G T UCEC 14161636 + 14161616 14161656 41 TCCCTGTGAGCTGTGGGTGACAGCATCTACCATCGCTGGAC TCCCTGTGAGCTGTGGGTGACATCATCTACCATCGCTGGAC < 41bp 0.831096034628407 0.519383556280236 0.17958596 0.122572094 prediction 0.623424956696341 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14161636 chr19:14161638 nonsynonymous SNV 0.246 2 23 hm5C_associated_SNPs_52966 0 0 0 0 2 chromatin 0.500231643919636 0.500231643921074 0 0 hm5C_site_48318 DeepMRMD:0;iRNA_m5C:0 48319 chr1 152636733 152636733 1 + G T PRAD 152636731 + 152636711 152636751 41 GTCTCTTCCTGCTGTGGTCCCAGCTCTGGGAGCTGCTGTGG GTCTCTTCCTGCTGTGGTCCCATCTCTGGGAGCTGCTGTGG < 41bp 0.821705958438793 0.50999494509832 0.2577044 0.04805118 prediction 0.623422026680944 Functional Loss - LCE2D ENSG00000187223 CDS Human protein_coding chr1:152636731 chr1:152636733 nonsynonymous SNV 0.017 2 23 hm5C_associated_SNPs_52967 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0 6.66133814775094e-16 hm5C_site_48319 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 48320 chr9 35674171 35674171 1 + C A LUAD 35674174 - 35674154 35674194 41 CTCCGGGTGGATCCTCCTCTCTGGGTGAATCCTCTTCACTG CTCCGGGTGGATCCTCCTCTCTGTGTGAATCCTCTTCACTG < 41bp 0.879018831604699 0.567312112241167 0.8458582 0.054605424 prediction 0.623413438727064 Functional Loss - CA9 ENSG00000107159 CDS Human protein_coding chr9:35674174 chr9:35674171 nonsynonymous SNV 0.213 0 24 hm5C_associated_SNPs_52968 0 0 0 0 0 Endoplasmic reticulum 0.500231644163637 0.500231645942072 0.6917164 0 hm5C_site_48320 DeepMRMD:0.6917164;iRNA_m5C:0 48321 chr6 99283810 99283810 1 + A C BLCA 99283806 + 99283786 99283826 41 ACAAGATCGCAGCGCAAGGGCGCAAGCGGAAAAAGCGGACC ACAAGATCGCAGCGCAAGGGCGCACGCGGAAAAAGCGGACC < 41bp 0.81170210268746 0.427459939311486 0.3360303 0.29334384 prediction 0.62340420537492 Functional Loss - POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283806 chr6:99283810 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_52969 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0 0 hm5C_site_48321 DeepMRMD:0;iRNA_m5C:0 48322 chr19 18392913 18392913 1 + A C rs7247767 18392909 + 18392889 18392929 41 CGCCTCCTGCTCTGCTGTGCCGCCAGGGCCTCCCCTAGCGC CGCCTCCTGCTCTGCTGTGCCGCCCGGGCCTCCCCTAGCGC < 41bp 0.811686593975077 0.475428959206908 0.05524248 0.014293671 prediction 0.623373187950154 Functional Loss - MIR3188 ENSG00000267959 ncRNA_exonic Human miRNA chr19:18392909 chr19:18392913 . . 0 25 hm5C_associated_SNPs_52970 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_48322 DeepMRMD:0;iRNA_m5C:0 48323 chr10 127442317 127442317 1 + G T UCEC 127442314 + 127442294 127442334 41 ATGCTTCTCCTAGTCTCAATCGAGAAGAAGTGATGAAACTC ATGCTTCTCCTAGTCTCAATCGATAAGAAGTGATGAAACTC < 41bp 0.811655781898046 0.455633258488737 0.9246839 0.23150325 prediction 0.623311563796092 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127442314 chr10:127442317 stopgain 0.998 1 24 hm5C_associated_SNPs_52971 0 0 1 0 2 Cytosol 0.500231643913246 0.500231643921092 0.8493678 0 hm5C_site_48323 DeepMRMD:0.8493678;iRNA_m5C:0 48324 chr21 37785326 37785326 1 + G T UCEC 37785323 + 37785303 37785343 41 CCTGATACAGCAAAGAAAACCAAGAGTCAGACACATCGAGG CCTGATACAGCAAAGAAAACCAATAGTCAGACACATCGAGG < 41bp 0.851339275988877 0.539694465036853 0.18156344 0.8360024 prediction 0.623289621904048 Functional Loss - CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37785323 chr21:37785326 nonsynonymous SNV 0.987 2 24 hm5C_associated_SNPs_52972 0 0 1 0 0 Ribosome 0.500231639872461 0.500231643942654 0 0 hm5C_site_48324 DeepMRMD:0;iRNA_m5C:0 48325 chr10 89504793 89504793 1 + G T LIHC 89504790 + 89504770 89504810 41 CTGCAGGTCCCGGATGATTGCGGGTGCCAATTTCTACATTG CTGCAGGTCCCGGATGATTGCGGTTGCCAATTTCTACATTG < 41bp 0.871253461166195 0.559615060263586 0.88054514 0.2753302 prediction 0.623276801805217 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89504790 chr10:89504793 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_52973 0 0 0 0 1 Cytosol 0.500231625540566 0.500231643115563 0.76109028 0 hm5C_site_48325 DeepMRMD:0.76109028;iRNA_m5C:0 48326 chr19 4157010 4157010 1 + G T LUSC 4157007 + 4156987 4157027 41 CCCAGCAGGTCCTGCCAAACCCCGACTCTGACGACTTCCTC CCCAGCAGGTCCTGCCAAACCCCTACTCTGACGACTTCCTC < 41bp 0.811633306035103 0.443030332067343 0.13760045 0.11910632 prediction 0.623266612070206 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4157007 chr19:4157010 nonsynonymous SNV 0.003 4 24 hm5C_associated_SNPs_52974 0 0 0 0 2 exosome 0.500231643923016 0.500231643921092 0 3.84803300335079e-12 hm5C_site_48326 DeepMRMD:0;iRNA_m5C:3.84803300335079e-12 48327 chrX 48542781 48542781 1 + A C UCEC 48542777 + 48542757 48542797 41 GCTTCGTGAAGGATAACCCCCAGAAGTCCTACTTCATCCGC GCTTCGTGAAGGATAACCCCCAGACGTCCTACTTCATCCGC < 41bp 0.811600297855522 0.424338878840419 0.869035 0.8069016 prediction 0.623200595711044 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48542777 chrX:48542781 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_52975 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643925011 0.1242668 0 hm5C_site_48327 DeepMRMD:0.1242668;iRNA_m5C:0 48328 chrX 48542779 48542779 1 + G T UCS 48542777 + 48542757 48542797 41 GCTTCGTGAAGGATAACCCCCAGAAGTCCTACTTCATCCGC GCTTCGTGAAGGATAACCCCCATAAGTCCTACTTCATCCGC < 41bp 0.811600297855522 0.487506134740061 0.869035 0.31924355 prediction 0.623200595711044 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48542777 chrX:48542779 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_52976 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.73807 0 hm5C_site_48328 DeepMRMD:0.73807;iRNA_m5C:0 48329 chr22 42276875 42276875 1 + G T UCEC 42276872 + 42276852 42276892 41 CGCCTGGTGCGCTGGCTGCTCAAGAAAGTCTTCCAGTGCCG CGCCTGGTGCGCTGGCTGCTCAATAAAGTCTTCCAGTGCCG < 41bp 0.884045840571166 0.572448009692449 0.42413634 0.15503111 prediction 0.623195661757435 Functional Loss - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42276872 chr22:42276875 stopgain 0.999 2 24 hm5C_associated_SNPs_52977 0 0 1 1 0 Ribosome 0.500236910638269 0.500235955052038 0 1.91117246317596e-06 hm5C_site_48329 DeepMRMD:0;iRNA_m5C:1.91117246317596e-06 48330 chr11 6953693 6953693 1 + G T UCEC 6953690 + 6953670 6953710 41 ATTTGAAAGTGTCTGGGCCCCATGAAGCCCTGAGCCAACTC ATTTGAAAGTGTCTGGGCCCCATTAAGCCCTGAGCCAACTC < 41bp 0.811596398783796 0.457228486142817 0.2639073 0.17658198 prediction 0.623192797567591 Functional Loss - ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6953690 chr11:6953693 stopgain 0.803 0 24 hm5C_associated_SNPs_52978 0 0 0 0 0 cytosol 0.500231643921074 0.500231643920899 0 3.49942297361849e-13 hm5C_site_48330 DeepMRMD:0;iRNA_m5C:3.49942297361849e-13 48331 chr2 220044485 220044485 1 + G T OV 220044483 + 220044463 220044503 41 CCAGAGGAGCCACACTCTGACAGGTGAGTACAGGCCACCTC CCAGAGGAGCCACACTCTGACATGTGAGTACAGGCCACCTC < 41bp 0.838870582982589 0.527274656205857 0.8917733 0.26246142 prediction 0.623191853553464 Functional Loss - RETREG2 ENSG00000144567 CDS Human protein_coding chr2:220044483 chr2:220044485 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_52979 0 0 1 0 2 unknown 0.500231530601368 0.500231694333937 0.7835466 0 hm5C_site_48331 DeepMRMD:0.7835466;iRNA_m5C:0 48332 chr12 98987752 98987752 1 + G T UCEC 98987749 + 98987729 98987769 41 AACCGTCGCTCCCTCCTCCCCTAGAAAGATGTTCTCGTCCG AACCGTCGCTCCCTCCTCCCCTATAAAGATGTTCTCGTCCG < 41bp 0.866585585420407 0.554994086218742 0.67658293 0.82031107 prediction 0.62318299840333 Functional Loss - SLC25A3 ENSG00000075415 splicing Human protein_coding chr12:98987749 chr12:98987752 . . 0 24 hm5C_associated_SNPs_52980 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48332 DeepMRMD:0;iRNA_m5C:0 48333 chr12 117465839 117465839 1 + G T LUSC 117465837 + 117465817 117465857 41 TTTGTGCTCTTTCTAGACACCGGGGGCTGATCCGCGCCTAT TTTGTGCTCTTTCTAGACACCGTGGGCTGATCCGCGCCTAT < 41bp 0.822748308010872 0.511157288592893 0.93286216 0.77103007 prediction 0.623182038835958 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117465837 chr12:117465839 synonymous SNV . 0 23 hm5C_associated_SNPs_52981 0 0 0 0 1 Cytosol 0.500231643918988 0.500231911218714 0.32366418 0 hm5C_site_48333 DeepMRMD:0.32366418;iRNA_m5C:0 48334 chr9 32784514 32784514 1 + G T LUAD 32784512 + 32784492 32784532 41 GCAAGGGGAGCTCAGATGAGCTGGCTAAGAAGGCGGGCCTC GCAAGGGGAGCTCAGATGAGCTTGCTAAGAAGGCGGGCCTC < 41bp 0.81412582516562 0.502543388677664 0.747776 0.43336284 prediction 0.623164872975911 Functional Loss - TMEM215 ENSG00000188133 CDS Human protein_coding chr9:32784512 chr9:32784514 synonymous SNV . 0 23 hm5C_associated_SNPs_52982 0 0 0 0 0 exosome 0.500231643921472 0.500231643921092 0.495552 7.59836638053457e-13 hm5C_site_48334 DeepMRMD:0.495552;iRNA_m5C:7.59836638053457e-13 48335 chr3 137483960 137483960 1 + G T LUSC 137483958 + 137483938 137483978 41 GCTCAAGGCGGCTGGCCTGCCCGTGGGGGCCTCCGACGGCC GCTCAAGGCGGCTGGCCTGCCCTTGGGGGCCTCCGACGGCC < 41bp 0.82448547765527 0.51290620299146 0.2996021 0.16418186 prediction 0.62315854932762 Functional Loss - SOX14 ENSG00000168875 CDS Human protein_coding chr3:137483958 chr3:137483960 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_52983 0 0 0 0 0 exosome 0.500231643921102 0.50023164418515 0 0 hm5C_site_48335 DeepMRMD:0;iRNA_m5C:0 48336 chr4 113571678 113571678 1 + G T UCEC 113571675 + 113571655 113571695 41 AATGCAACAGGACCACAGTTCGTGAGTGGAGTGATTGTGAA AATGCAACAGGACCACAGTTCGTTAGTGGAGTGATTGTGAA < 41bp 0.865190747307142 0.553622858939092 0.25173566 0.030671567 prediction 0.6231357767361 Functional Loss - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113571675 chr4:113571678 synonymous SNV . 0 24 hm5C_associated_SNPs_52984 0 0 1 0 2 cytosol 0.500231660975273 0.500231645255209 0 3.1440126946336e-08 hm5C_site_48336 DeepMRMD:0;iRNA_m5C:3.1440126946336e-08 48337 chr19 4317277 4317277 1 + G T UCEC 4317275 + 4317255 4317295 41 GCCGGTGACTCTGGAGACACCAGGTGACTGGATTCCACCCT GCCGGTGACTCTGGAGACACCATGTGACTGGATTCCACCCT < 41bp 0.820524676923304 0.508963850235525 0.8901211 0.13944867 prediction 0.623121653375558 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4317275 chr19:4317277 nonsynonymous SNV 0.969 2 23 hm5C_associated_SNPs_52985 0 0 0 0 2 cytosol 0.500231643828013 0.500231643917833 0.7802422 0 hm5C_site_48337 DeepMRMD:0.7802422;iRNA_m5C:0 48338 chr8 1948497 1948497 1 + A C rs189587040 1948493 + 1948473 1948513 41 CGCGGAAACACCTGATATCCCAGCAAAGGAAGCTGCAGAGG CGCGGAAACACCTGATATCCCAGCCAAGGAAGCTGCAGAGG < 41bp 0.811549991247022 0.432945120145293 0.7476772 0.5378456 prediction 0.623099982494044 Functional Loss - KBTBD11 ENSG00000176595 UTR5 Human protein_coding chr8:1948493 chr8:1948497 . . 0 25 hm5C_associated_SNPs_52986 0 0 0 0 1 exosome 0.500231656646206 0.500231643921043 0.4196632 2.54503245145088e-08 hm5C_site_48338 DeepMRMD:0.4196632;iRNA_m5C:2.54503245145088e-08 48339 chr6 55039563 55039563 1 + G T THYM 55039561 + 55039541 55039581 41 ATATGAGTGGGTCCTGATCGCCGGGTACATCATCGTGTTCG ATATGAGTGGGTCCTGATCGCCTGGTACATCATCGTGTTCG < 41bp 0.811549961499754 0.491836963240792 0.9203907 0.6980714 prediction 0.623099922999508 Functional Loss - HCRTR2 ENSG00000137252 CDS Human protein_coding chr6:55039561 chr6:55039563 nonsynonymous SNV 0.982 2 23 hm5C_associated_SNPs_52987 0 0 0 0 0 unknown 0.500231644295416 0.500234407007708 0.4446386 0 hm5C_site_48339 DeepMRMD:0.4446386;iRNA_m5C:0 48340 chr10 26727348 26727348 1 + A C rs563762045 26727344 + 26727324 26727364 41 GGCTGCAAAATGGTTCCATTCGCCAGGAGACGCTCCTGAGA GGCTGCAAAATGGTTCCATTCGCCCGGAGACGCTCCTGAGA < 41bp 0.811546031267591 0.469425240371549 0.33009964 0.14893803 prediction 0.623092062535181 Functional Loss - APBB1IP ENSG00000077420 UTR5 Human protein_coding chr10:26727344 chr10:26727348 . . 0 25 hm5C_associated_SNPs_52988 0 0 0 0 1 nucleus 0.500231643843623 0.500231643912118 0 0 hm5C_site_48340 DeepMRMD:0;iRNA_m5C:0 48341 chr22 21288098 21288098 1 + G T CESC 21288096 + 21288076 21288116 41 CCCACCAATGGGATCTGTCTCAGCACCCAACCTGCCTACAG CCCACCAATGGGATCTGTCTCATCACCCAACCTGCCTACAG < 41bp 0.813691633570855 0.502148704048393 0.8874116 0.22711426 prediction 0.623085859044926 Functional Loss - CRKL ENSG00000099942 CDS Human protein_coding chr22:21288096 chr22:21288098 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_52989 0 0 1 0 1 Nucleus 0.500231643922355 0.500231643943265 0.7748232 0 hm5C_site_48341 DeepMRMD:0.7748232;iRNA_m5C:0 48342 chr5 44809482 44809482 1 + G T LUAD 44809479 + 44809459 44809499 41 AACCTGAACCTGCGCTGGACCTCGCGGCGCTGCGTGCGGTC AACCTGAACCTGCGCTGGACCTCTCGGCGCTGCGTGCGGTC < 41bp 0.811526074687783 0.448460725429694 0.20851278 0.026350796 prediction 0.623052149375566 Functional Loss - MRPS30 ENSG00000112996 CDS Human protein_coding chr5:44809479 chr5:44809482 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_52990 0 0 1 0 0 Ribosome 0.500227165520185 0.499801080894931 0 0.000454331040370404 hm5C_site_48342 DeepMRMD:0;iRNA_m5C:0.000454331040370404 48343 chr11 69063537 69063537 1 + G T LUAD 69063534 + 69063514 69063554 41 GGATGTGGCTCTGCGCTCACCTGGGCGAGGACTTCTGGCCG GGATGTGGCTCTGCGCTCACCTGTGCGAGGACTTCTGGCCG < 41bp 0.885918224586001 0.574399011579685 0.9144549 0.8132289 prediction 0.623038426012632 Functional Loss - MYEOV ENSG00000172927 CDS Human protein_coding chr11:69063534 chr11:69063537 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_52991 0 0 0 0 0 Ribosome 0.500231644733115 0.500234014593319 0.202452 0 hm5C_site_48343 DeepMRMD:0.202452;iRNA_m5C:0 48344 chr3 147128524 147128524 1 + G T BLCA 147128521 + 147128501 147128541 41 ACGTGAACATGGCCGCGCATCACGGCGCCGGCGCCTTCTTC ACGTGAACATGGCCGCGCATCACTGCGCCGGCGCCTTCTTC < 41bp 0.877124032840818 0.565608652056523 0.6758164 0.22741094 prediction 0.62303076156859 Functional Loss - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147128521 chr3:147128524 nonsynonymous SNV 0.744 4 24 hm5C_associated_SNPs_52992 0 0 0 0 0 exosome 0.500231643924359 0.500231643217391 0.3516328 1.41393607933082e-09 hm5C_site_48344 DeepMRMD:0.3516328;iRNA_m5C:1.41393607933082e-09 48345 chr4 49005887 49005887 1 + G T GBM 49005884 + 49005864 49005904 41 TATTAACTCAGGGACAAACCCTGGGAAAACCATGACCATTG TATTAACTCAGGGACAAACCCTGTGAAAACCATGACCATTG < 41bp 0.811510233361524 0.446991203357005 0.26057366 0.02967593 prediction 0.623020466723048 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49005884 chr4:49005887 nonsynonymous SNV 0.103 1 24 hm5C_associated_SNPs_52993 0 0 0 0 0 unknown 0.500231650668162 0.500231643900922 0 1.3534479537114e-08 hm5C_site_48345 DeepMRMD:0;iRNA_m5C:1.3534479537114e-08 48346 chr4 110481517 110481517 1 + G T rs573198533 110481515 + 110481495 110481535 41 TGCTCCAGAGGGGCCTCTGGCCGTGGCGCACGCGGCTGCTG TGCTCCAGAGGGGCCTCTGGCCTTGGCGCACGCGGCTGCTG < 41bp 0.818870582989414 0.507364222494068 0.5810703 0.12761128 prediction 0.623012720990691 Functional Loss - MCUB ENSG00000005059 CDS Human protein_coding chr4:110481515 chr4:110481517 synonymous SNV . 0 23 hm5C_associated_SNPs_52994 0 0 1 0 1 unknown 0.500231643843178 0.500231643923661 0.1621406 0 hm5C_site_48346 DeepMRMD:0.1621406;iRNA_m5C:0 48347 chr1 231678318 231678318 1 + G T BLCA 231678316 + 231678296 231678336 41 CCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGT CCAGGTAGCCCAAGAGCTATCATGGGAAGATATGCATCAGT < 41bp 0.813067927081491 0.501564118733181 0.9473204 0.90187085 prediction 0.623007616696619 Functional Loss - TSNAX ENSG00000116918;ENSG00000270106 CDS Human other chr1:231678316 chr1:231678318 nonsynonymous SNV 0.517 4 23 hm5C_associated_SNPs_52995 0 0 1 1 2 Ribosome 0.500231878450024 0.500231641746655 0.0908990999999999 4.73406737810933e-07 hm5C_site_48347 DeepMRMD:0.0908990999999999;iRNA_m5C:4.73406737810933e-07 48348 chr11 64087315 64087315 1 + G T STAD 64087312 + 64087292 64087332 41 GGGTGTGCTGTTTGGAGTTCCTGGGGCCTTCACCCCTGGAT GGGTGTGCTGTTTGGAGTTCCTGTGGCCTTCACCCCTGGAT < 41bp 0.811476983449757 0.437345174590728 0.90733796 0.18938795 prediction 0.622953966899513 Functional Loss - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64087312 chr11:64087315 nonsynonymous SNV 0.938 4 24 hm5C_associated_SNPs_52996 0 0 1 1 1 Cytosol 0.500231644127336 0.500232128534768 0.81467592 0 hm5C_site_48348 DeepMRMD:0.81467592;iRNA_m5C:0 48349 chr20 55027543 55027543 1 + G T LUAD 55027541 + 55027521 55027561 41 CAAAGGAGCTCTCCTTGGACCTGGATGTGGCCAAGGAGACA CAAAGGAGCTCTCCTTGGACCTTGATGTGGCCAAGGAGACA < 41bp 0.811474972964303 0.49379171048872 0.22852302 0.078336865 prediction 0.622949945928606 Functional Loss - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55027541 chr20:55027543 synonymous SNV . 0 23 hm5C_associated_SNPs_52997 0 0 0 0 0 chromatin 0.500231641466604 0.500231643921092 0 0 hm5C_site_48349 DeepMRMD:0;iRNA_m5C:0 48350 chr1 248637563 248637563 1 + G T ESCA 248637560 + 248637540 248637580 41 CTCCGCAACAAAGATGTCACCAGGGCTCTGAGGAGCATGAT CTCCGCAACAAAGATGTCACCAGTGCTCTGAGGAGCATGAT < 41bp 0.860151846929889 0.548683858804691 0.71658 0.09448102 prediction 0.622935976250398 Functional Loss - OR2T3 ENSG00000196539 CDS Human protein_coding chr1:248637560 chr1:248637563 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_52998 0 0 0 0 0 unknown 0.500231639966739 0.500231643831417 0.43316 0 hm5C_site_48350 DeepMRMD:0.43316;iRNA_m5C:0 48351 chr5 71015731 71015731 1 + A C UCEC 71015727 + 71015707 71015747 41 ATCGAAGCGCTGCAAGAAGTCTTGAAGAAGCTCAAGAGTAA ATCGAAGCGCTGCAAGAAGTCTTGCAGAAGCTCAAGAGTAA < 41bp 0.811466983539195 0.424007110328963 0.16354203 0.22638696 prediction 0.62293396707839 Functional Loss - CARTPT ENSG00000164326 CDS Human protein_coding chr5:71015727 chr5:71015731 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_52999 0 0 0 0 2 exosome 0.500231630354824 0.500231320270241 0 6.20169165355122e-07 hm5C_site_48351 DeepMRMD:0;iRNA_m5C:6.20169165355122e-07 48352 chr2 99771590 99771590 1 + G T rs2632260 99771587 + 99771567 99771607 41 GGCGGCCGTGGGGTCTTGGGCGCGCGCGGTGTTTCTGGCGG GGCGGCCGTGGGGTCTTGGGCGCTCGCGGTGTTTCTGGCGG < 41bp 0.847743054885978 0.536276528844528 0.45762762 0.3397308 prediction 0.622933052082901 Functional Loss - LIPT1 ENSG00000144182 UTR5 Human protein_coding chr2:99771587 chr2:99771590 . . 0 24 hm5C_associated_SNPs_53000 0 0 0 0 0 chromatin 0.500231642830848 0.500231641488792 0 2.68411093351517e-09 hm5C_site_48352 DeepMRMD:0;iRNA_m5C:2.68411093351517e-09 48353 chr7 98955975 98955975 1 + G T OV 98955973 + 98955953 98955993 41 TTGTGTTCAGGGTCTCGACTCTGAAGACAGAGTTCCTGCCG TTGTGTTCAGGGTCTCGACTCTTAAGACAGAGTTCCTGCCG < 41bp 0.811442397215148 0.498227762773501 0.032960087 0.010522306 prediction 0.622884794430295 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98955973 chr7:98955975 synonymous SNV . 0 23 hm5C_associated_SNPs_53001 0 0 1 1 1 Cytosol 0.500234881839431 0.500231654560122 0 6.45455861780775e-06 hm5C_site_48353 DeepMRMD:0;iRNA_m5C:6.45455861780775e-06 48354 chr14 93118746 93118746 1 + G T UCEC 93118744 + 93118724 93118764 41 CACAGCATGCCAGAGCTGCCCAGGACAGCCAAACAACCCCC CACAGCATGCCAGAGCTGCCCATGACAGCCAAACAACCCCC < 41bp 0.842754811017236 0.531319439811455 0.44215223 0.14294225 prediction 0.622870742411561 Functional Loss - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93118744 chr14:93118746 nonsynonymous SNV 0.015 2 23 hm5C_associated_SNPs_53002 0 0 0 0 0 cytosol 0.500231765994236 0.500231643956994 0 2.4407448417918e-07 hm5C_site_48354 DeepMRMD:0;iRNA_m5C:2.4407448417918e-07 48355 chr10 112838129 112838129 1 + G T ACC 112838127 + 112838107 112838147 41 AGGCTTGGTGCGAGATCTACCTGGCGCTCGACGTGCTCTTC AGGCTTGGTGCGAGATCTACCTTGCGCTCGACGTGCTCTTC < 41bp 0.811429579458952 0.495215010600858 0.870979 0.07087034 prediction 0.622859158917904 Functional Loss - ADRA2A ENSG00000150594 CDS Human protein_coding chr10:112838127 chr10:112838129 synonymous SNV . 0 23 hm5C_associated_SNPs_53003 0 0 0 0 0 exosome 0.500231646341546 0.500231644204989 0.741958 4.27311541706388e-09 hm5C_site_48355 DeepMRMD:0.741958;iRNA_m5C:4.27311541706388e-09 48356 chr19 53077370 53077370 1 + G T HNSC 53077368 + 53077348 53077388 41 TGGTACGTGAGGAAAAAACACGGAAGAGGAAGAGGAAAGCA TGGTACGTGAGGAAAAAACACGTAAGAGGAAGAGGAAAGCA < 41bp 0.811871248328688 0.500445689538449 0.16003093 0.13301769 prediction 0.622851117580478 Functional Loss - ZNF701 ENSG00000167562 CDS Human protein_coding chr19:53077368 chr19:53077370 synonymous SNV . 0 23 hm5C_associated_SNPs_53004 0 0 0 0 2 nucleolus 0.500231643920443 0.500231643923288 0 0 hm5C_site_48356 DeepMRMD:0;iRNA_m5C:0 48357 chrX 102005197 102005197 1 + G T LUAD 102005194 + 102005174 102005214 41 GAACTCACCGGGACAGCAATCTGGATTAAAGATACTAGGAC GAACTCACCGGGACAGCAATCTGTATTAAAGATACTAGGAC < 41bp 0.848222460594822 0.53680621529225 0.38655514 0.18040472 prediction 0.622832490605145 Functional Loss - ARMCX5-GPRASP2;BHLHB9 ENSG00000198908 CDS Human protein_coding chrX:102005194 chrX:102005197 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53005 0 0 1 0 0 unknown 0.50023234917377 0.500231642443 0 1.41346153981203e-06 hm5C_site_48357 DeepMRMD:0;iRNA_m5C:1.41346153981203e-06 48358 chr19 13869957 13869957 1 + G T HNSC 13869955 + 13869935 13869975 41 TGGAGACGGACGCCATGTTCCGGCTGGAGCATGGCGAGGCC TGGAGACGGACGCCATGTTCCGTCTGGAGCATGGCGAGGCC < 41bp 0.822921651836252 0.511527989026856 0.6265113 0.25379023 prediction 0.622787325618792 Functional Loss - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13869955 chr19:13869957 synonymous SNV . 0 23 hm5C_associated_SNPs_53006 0 0 1 0 1 Cytosol 0.500231644073205 0.500231858841197 0.2530226 0 hm5C_site_48358 DeepMRMD:0.2530226;iRNA_m5C:0 48359 chr1 152975844 152975844 1 + G T LUSC 152975841 + 152975821 152975861 41 GTCCCTGAACCAGGCAGCATCAAGGTCCCTGACCAAGGCTT GTCCCTGAACCAGGCAGCATCAATGTCCCTGACCAAGGCTT < 41bp 0.884831454669859 0.573443865013073 0.9011154 0.19155511 prediction 0.622775179313573 Functional Loss - SPRR3 ENSG00000163209 CDS Human protein_coding chr1:152975841 chr1:152975844 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_53007 0 0 0 0 0 exosome 0.500231644163901 0.500230744973955 0.8022308 1.7983798927812e-06 hm5C_site_48359 DeepMRMD:0.8022308;iRNA_m5C:1.7983798927812e-06 48360 chr11 102702401 102702401 1 + G T rs577576661 102702398 + 102702378 102702418 41 GTGGGTGACCACGGCCGCATCTGGGAGGCGACTCTTCGGAT GTGGGTGACCACGGCCGCATCTGTGAGGCGACTCTTCGGAT < 41bp 0.858992692174048 0.547605414220292 0.8809415 0.29944116 prediction 0.622774555907511 Functional Loss - WTAPP1 ENSG00000255282 ncRNA_exonic Human transcribed_processed_pseudogene chr11:102702398 chr11:102702401 . . 0 24 hm5C_associated_SNPs_53008 0 0 0 0 0 unknown 0.500231643921405 0.500231643960763 0.761883 0 hm5C_site_48360 DeepMRMD:0.761883;iRNA_m5C:0 48361 chr5 53815360 53815360 1 + G T UCEC 53815358 + 53815338 53815378 41 TGGACCTATTAGCGCTGTATCAGGGGCATCTGGCTAACTTC TGGACCTATTAGCGCTGTATCATGGGCATCTGGCTAACTTC < 41bp 0.822417047967627 0.511029887573632 0.96891665 0.9280635 prediction 0.622774320787989 Functional Loss - SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815358 chr5:53815360 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53009 0 0 1 0 1 chromatin 0.500231646468518 0.500231643921093 0.0817063 5.09485120758768e-09 hm5C_site_48361 DeepMRMD:0.0817063;iRNA_m5C:5.09485120758768e-09 48362 chr19 11916852 11916852 1 + G T UCEC 11916849 + 11916829 11916869 41 GTTCCGGAAGACATGCTGAACAAGAAAACTCTTCCTGGAGT GTTCCGGAAGACATGCTGAACAATAAAACTCTTCCTGGAGT < 41bp 0.846230306768928 0.534854600276539 0.49095368 0.80695796 prediction 0.622751412984778 Functional Loss - ZNF491 ENSG00000177599 CDS Human protein_coding chr19:11916849 chr19:11916852 nonsynonymous SNV 0.015 1 24 hm5C_associated_SNPs_53010 0 0 0 0 1 exosome 0.500231643848924 0.500231643410109 0 8.77631523010791e-10 hm5C_site_48362 DeepMRMD:0;iRNA_m5C:8.77631523010791e-10 48363 chr20 3725632 3725632 1 + G T OV 3725630 + 3725610 3725650 41 ACTCCGGAGGGCGCCTTCCACAGCTTTGGCTACACCGCCCG ACTCCGGAGGGCGCCTTCCACATCTTTGGCTACACCGCCCG < 41bp 0.811354126054612 0.490159492255956 0.5433412 0.34807405 prediction 0.622708252109224 Functional Loss - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3725630 chr20:3725632 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_53011 0 0 0 0 1 exosome 0.500231643923478 0.500231648734552 0.0866823999999999 0 hm5C_site_48363 DeepMRMD:0.0866823999999999;iRNA_m5C:0 48364 chr3 50129624 50129624 1 + G T UCEC 50129621 + 50129601 50129641 41 GTGATAGATATGATGACTACCGAGACTATGACAGTCCAGAG GTGATAGATATGATGACTACCGATACTATGACAGTCCAGAG < 41bp 0.811348884633538 0.485467855008704 0.84099114 0.6768143 prediction 0.622697769267077 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50129621 chr3:50129624 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_53012 0 0 1 0 1 Cytosol 0.50023164392109 0.500231643921071 0.32835368 3.88578058618805e-14 hm5C_site_48364 DeepMRMD:0.32835368;iRNA_m5C:3.88578058618805e-14 48365 chr6 114181714 114181714 1 + G T HNSC 114181711 + 114181691 114181731 41 CCCCCTCACAGGAGGCCCAGCCCGAGTGCAGTCCAGAAGCC CCCCCTCACAGGAGGCCCAGCCCTAGTGCAGTCCAGAAGCC < 41bp 0.865014854287383 0.553703311823645 0.16977498 0.12673175 prediction 0.622623084927477 Functional Loss - MARCKS ENSG00000155130 CDS Human other chr6:114181711 chr6:114181714 stopgain 1.000 0 24 hm5C_associated_SNPs_53013 0 0 1 0 0 Ribosome 0.5002316439211 0.500231643920735 0 7.29194482573803e-13 hm5C_site_48365 DeepMRMD:0;iRNA_m5C:7.29194482573803e-13 48366 chr15 90611352 90611352 1 + G T LUAD 90611350 + 90611330 90611370 41 AAGCCACACTCGTGCCCACACTGCAGCAAGCTCTTCAAGCA AAGCCACACTCGTGCCCACACTTCAGCAAGCTCTTCAAGCA < 41bp 0.815448511079739 0.504157142198321 0.11642137 0.079107314 prediction 0.622582737762837 Functional Loss - ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90611350 chr15:90611352 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_53014 0 0 0 0 0 Endoplasmic reticulum 0.500231788376561 0.500231659656817 0 2.57439489281808e-07 hm5C_site_48366 DeepMRMD:0;iRNA_m5C:2.57439489281808e-07 48367 chrX 23353139 23353139 1 + G T UCEC 23353136 + 23353116 23353156 41 AGCTTCAGCCGCTACCAGGTCGAGGAGAGCGTGGAGCACCT AGCTTCAGCCGCTACCAGGTCGATGAGAGCGTGGAGCACCT < 41bp 0.874042121503147 0.562752520915125 0.8786434 0.40685272 prediction 0.622579201176044 Functional Loss - PTCHD1 ENSG00000165186 CDS Human protein_coding chrX:23353136 chrX:23353139 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53015 0 0 0 0 0 exosome 0.500231643920251 0.500231643784944 0.7572868 2.70612421360283e-10 hm5C_site_48367 DeepMRMD:0.7572868;iRNA_m5C:2.70612421360283e-10 48368 chr11 73670670 73670670 1 + G T UCEC 73670667 + 73670647 73670687 41 GCAAACCTGAAAAGGTGTTCCACGAGTTCTTTGGTGGAAAC GCAAACCTGAAAAGGTGTTCCACTAGTTCTTTGGTGGAAAC < 41bp 0.868355791441651 0.557091341838045 0.4639162 0.32703775 prediction 0.622528899207212 Functional Loss - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73670667 chr11:73670670 stopgain 0.833 1 24 hm5C_associated_SNPs_53016 0 0 0 0 1 exosome 0.500164074686062 0.50014787298645 0 3.24033992242789e-05 hm5C_site_48368 DeepMRMD:0;iRNA_m5C:3.24033992242789e-05 48369 chr11 836418 836418 1 + G T rs116211118 836415 + 836395 836435 41 TTGGGCTGCTGCGCCACCTTCAAGGAGCGTCGGAACCTGCT TTGGGCTGCTGCGCCACCTTCAATGAGCGTCGGAACCTGCT < 41bp 0.81126136716546 0.436114300710279 0.9198469 0.45811263 prediction 0.622522734330921 Functional Loss - CD151 ENSG00000177697 CDS Human protein_coding chr11:836415 chr11:836418 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_53017 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.8396938 0 hm5C_site_48369 DeepMRMD:0.8396938;iRNA_m5C:0 48370 chrX 47976520 47976520 1 + G T LUSC 47976517 + 47976497 47976537 41 CAAGTAGCTCTGAGAAGATTCACGAGAGATCTGGTAAGAGG CAAGTAGCTCTGAGAAGATTCACTAGAGATCTGGTAAGAGG < 41bp 0.811260936051186 0.459777885011174 0.18452081 0.108441204 prediction 0.622521872102372 Functional Loss - SSX6 ENSG00000171483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47976517 chrX:47976520 . . 0 24 hm5C_associated_SNPs_53018 0 0 0 0 1 unknown 0.500231644570396 0.5002315080278 0 2.73085192237232e-07 hm5C_site_48370 DeepMRMD:0;iRNA_m5C:2.73085192237232e-07 48371 chr7 129912925 129912925 1 + G T UCEC 129912922 + 129912902 129912942 41 TTGAAACATTTCAGATTTCCCAAGAAATGGATAACCTCGTG TTGAAACATTTCAGATTTCCCAATAAATGGATAACCTCGTG < 41bp 0.866664989250337 0.555406983255131 0.32137418 0.06614411 prediction 0.622516011990411 Functional Loss - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129912922 chr7:129912925 stopgain 0.999 0 24 hm5C_associated_SNPs_53019 0 0 0 0 2 exosome 0.500231643902131 0.500231643921092 0 0 hm5C_site_48371 DeepMRMD:0;iRNA_m5C:0 48372 chr21 46047346 46047346 1 + G T STAD 46047344 + 46047324 46047364 41 GCTGCCAGCAGTCTAGCTGCCAGCCGGCTTACTGCACCTCC GCTGCCAGCAGTCTAGCTGCCATCCGGCTTACTGCACCTCC < 41bp 0.819215802345447 0.507963366405963 0.17081681 0.10107899 prediction 0.622504871878968 Functional Loss - KRTAP10-9 ENSG00000221837 CDS Human protein_coding chr21:46047344 chr21:46047346 nonsynonymous SNV 0.802 3 23 hm5C_associated_SNPs_53020 0 0 0 0 0 unknown 0.50023164392006 0.50023164392129 0 0 hm5C_site_48372 DeepMRMD:0;iRNA_m5C:0 48373 chrX 140993781 140993781 1 + A T rs151047723 140993777 + 140993757 140993797 41 TTTTGAGGGTTTTCCCCAGTCTCCACTCCAGATTCCTGTGA TTTTGAGGGTTTTCCCCAGTCTCCTCTCCAGATTCCTGTGA < 41bp 0.817403880935245 0.506174314359084 0.94285524 0.06862411 prediction 0.622459133152321 Functional Loss - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993777 chrX:140993781 synonymous SNV . 0 25 hm5C_associated_SNPs_53021 0 0 0 0 0 exosome 0.500231644751963 0.50023163989605 0.88571048 9.71182623210609e-09 hm5C_site_48373 DeepMRMD:0.88571048;iRNA_m5C:9.71182623210609e-09 48374 chr5 167812361 167812361 1 + G T UCEC 167812359 + 167812339 167812379 41 AGCAGCGCCTGGAGCTTGCACAGCAGGAGTACCAGCAACTG AGCAGCGCCTGGAGCTTGCACATCAGGAGTACCAGCAACTG < 41bp 0.811212367087338 0.497064572189499 0.8521018 0.57786006 prediction 0.622424734174676 Functional Loss - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167812359 chr5:167812361 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53022 0 0 1 0 1 Ribosome 0.500231643921093 0.500231643921092 0.54848348 2.22044604925031e-16 hm5C_site_48374 DeepMRMD:0.54848348;iRNA_m5C:2.22044604925031e-16 48375 chr15 101434182 101434182 1 + G T COAD 101434180 + 101434160 101434200 41 GGAACTTCCCCCTGCTGATGCTGGTGTGGAAGCTGGCACCC GGAACTTCCCCCTGCTGATGCTTGTGTGGAAGCTGGCACCC < 41bp 0.837126240335303 0.525917404219041 0.22626778 0.06281462 prediction 0.622417672232524 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101434180 chr15:101434182 synonymous SNV . 0 23 hm5C_associated_SNPs_53023 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_48375 DeepMRMD:0;iRNA_m5C:0 48376 chr7 128850908 128850908 1 + G T LUSC 128850906 + 128850886 128850926 41 AGCTCCTGCAGAACCCAGGCCAGGAGCTGTCCTTCAGCATG AGCTCCTGCAGAACCCAGGCCATGAGCTGTCCTTCAGCATG < 41bp 0.811178650185731 0.482058999521336 0.6061703 0.119280785 prediction 0.622357300371463 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128850906 chr7:128850908 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_53024 0 0 1 0 1 cytosol 0.500231643933417 0.500231553861581 0.2123406 1.80143672201538e-07 hm5C_site_48376 DeepMRMD:0.2123406;iRNA_m5C:1.80143672201538e-07 48377 chr12 3387608 3387608 1 + G T OV 3387605 + 3387585 3387625 41 AGCTCTGTGGCTGTGGGCTGCTGGGAGTGGGCATCTGGCTC AGCTCTGTGGCTGTGGGCTGCTGTGAGTGGGCATCTGGCTC < 41bp 0.81117718876842 0.435841099178894 0.8111138 0.24107891 prediction 0.62235437753684 Functional Loss - TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3387605 chr12:3387608 stopgain 0.997 1 24 hm5C_associated_SNPs_53025 0 0 1 0 1 Nucleus 0.500231643920165 0.500231696008734 0.6222276 0 hm5C_site_48377 DeepMRMD:0.6222276;iRNA_m5C:0 48378 chr2 11053234 11053234 1 + G T LUAD 11053232 + 11053212 11053252 41 GACGCTGGAGAACGTGGAGACGGCGTGCATTGGCTGGTTCA GACGCTGGAGAACGTGGAGACGTCGTGCATTGGCTGGTTCA < 41bp 0.812612571248271 0.501441535032427 0.7027831 0.38206735 prediction 0.622342072431689 Functional Loss - KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11053232 chr2:11053234 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_53026 0 0 0 0 0 exosome 0.500231643865835 0.500231560324048 0.4055662 1.67083573421323e-07 hm5C_site_48378 DeepMRMD:0.4055662;iRNA_m5C:1.67083573421323e-07 48379 chr19 17985316 17985316 1 + G T BRCA 17985314 + 17985294 17985334 41 TGTCTACAGATGCTGTACACCGGCATCGTAATCTACGCACC TGTCTACAGATGCTGTACACCGTCATCGTAATCTACGCACC < 41bp 0.811166567695213 0.487886924529638 0.49054566 0.03302926 prediction 0.622333135390425 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17985314 chr19:17985316 nonsynonymous SNV 0.970 5 23 hm5C_associated_SNPs_53027 0 0 0 0 2 Nucleus 0.500231541044987 0.500178547106091 0 0.000105987877792701 hm5C_site_48379 DeepMRMD:0;iRNA_m5C:0.000105987877792701 48380 chr1 1452640 1452640 1 + G T UCEC 1452638 + 1452618 1452658 41 GCAGACACAGGAGCGGCTGTCAGGCAGTGCCAGCCCTGAGC GCAGACACAGGAGCGGCTGTCATGCAGTGCCAGCCCTGAGC < 41bp 0.811151681142433 0.481253863529927 0.8837193 0.6009358 prediction 0.622303362284866 Functional Loss - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1452638 chr1:1452640 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_53028 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.565567 0 hm5C_site_48380 DeepMRMD:0.565567;iRNA_m5C:0 48381 chr2 37032707 37032707 1 + G T UCEC 37032704 + 37032684 37032724 41 GGACAAAGTGGAGGAGGCTTCAAGACTTGCGAGAGAGTCAG GGACAAAGTGGAGGAGGCTTCAATACTTGCGAGAGAGTCAG < 41bp 0.872965813240324 0.561816478113685 0.49050593 0.39751136 prediction 0.622298670253278 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:37032704 chr2:37032707 nonsynonymous SNV 0.342 4 24 hm5C_associated_SNPs_53029 0 0 0 0 0 Nucleus 0.500231652426581 0.500231643908776 0 1.70356082573875e-08 hm5C_site_48381 DeepMRMD:0;iRNA_m5C:1.70356082573875e-08 48382 chr20 31685464 31685464 1 + G T HNSC 31685461 + 31685441 31685481 41 GAGTCCTGCCCACTTATCATCAGGATCCAGGTGCTGAACCC GAGTCCTGCCCACTTATCATCAGTATCCAGGTGCTGAACCC < 41bp 0.883001866649374 0.571874637949444 0.7673553 0.054921716 prediction 0.622254457399861 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31685461 chr20:31685464 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_53030 0 0 0 0 1 exosome 0.500231821462607 0.500231643921092 0.5347106 3.55083030312286e-07 hm5C_site_48382 DeepMRMD:0.5347106;iRNA_m5C:3.55083030312286e-07 48383 chr18 8784116 8784116 1 + G T COAD 8784113 + 8784093 8784133 41 CCGGGGGTGGGGCCCCCCTGCAGGAGGAGCTGAAGTCAGCC CCGGGGGTGGGGCCCCCCTGCAGTAGGAGCTGAAGTCAGCC < 41bp 0.883652697185395 0.572533232959537 0.8580432 0.33725828 prediction 0.622238928451716 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8784113 chr18:8784116 stopgain 0.998 0 24 hm5C_associated_SNPs_53031 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0.7160864 0 hm5C_site_48383 DeepMRMD:0.7160864;iRNA_m5C:0 48384 chr11 59210817 59210817 1 + A C rs147186459 59210813 + 59210793 59210833 41 TGATCAGAGGTGACACCCATCTGCACACACCCATGTACTTC TGATCAGAGGTGACACCCATCTGCCCACACCCATGTACTTC < 41bp 0.811115474707844 0.423470136049386 0.10746187 0.11621967 prediction 0.622230949415687 Functional Loss - OR5A1 ENSG00000172320 CDS Human protein_coding chr11:59210813 chr11:59210817 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_53032 0 0 0 0 0 unknown 0.500231643926676 0.500231644122887 0 0 hm5C_site_48384 DeepMRMD:0;iRNA_m5C:0 48385 chr3 179294470 179294470 1 + G T UCEC 179294467 + 179294447 179294487 41 TGCAGTGCAGAGAACTCTTCCAAGAAATGAATATTGAATTG TGCAGTGCAGAGAACTCTTCCAATAAATGAATATTGAATTG < 41bp 0.811107102290784 0.457887715804322 0.3654679 0.076945454 prediction 0.622214204581569 Functional Loss - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179294467 chr3:179294470 stopgain 0.999 1 24 hm5C_associated_SNPs_53033 0 0 1 0 2 Ribosome 0.500231644251227 0.500231526635947 0 2.35230560807764e-07 hm5C_site_48385 DeepMRMD:0;iRNA_m5C:2.35230560807764e-07 48386 chr14 74086346 74086346 1 + G T UCEC 74086344 + 74086324 74086364 41 ACCCCAGATAATCTGTTACCCAGAAACTGGTCACTGTATTG ACCCCAGATAATCTGTTACCCATAAACTGGTCACTGTATTG < 41bp 0.813987191911884 0.502880199332345 0.23653871 0.0472517 prediction 0.62221398515908 Functional Loss - ACOT6 ENSG00000205669 CDS Human protein_coding chr14:74086344 chr14:74086346 stopgain 0.644 0 23 hm5C_associated_SNPs_53034 0 0 0 0 0 exosome 0.500231643898835 0.500231550738332 0 1.86321005513079e-07 hm5C_site_48386 DeepMRMD:0;iRNA_m5C:1.86321005513079e-07 48387 chr10 104679282 104679282 1 + A C LUSC 104679278 + 104679258 104679298 41 GGCCTCGTGGCCGTGGTAGTCTCCACCATCGGTATCGTCAT GGCCTCGTGGCCGTGGTAGTCTCCCCCATCGGTATCGTCAT < 41bp 0.811098110902169 0.41019967094201 0.95321715 0.40089542 prediction 0.622196221804338 Functional Loss - CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104679278 chr10:104679282 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_53035 0 0 1 0 0 Ribosome 0.5002520874742 0.500231664654956 0.9064343 4.08456384868305e-05 hm5C_site_48387 DeepMRMD:0.9064343;iRNA_m5C:4.08456384868305e-05 48388 chr16 24909324 24909324 1 + G T UCEC 24909321 + 24909301 24909341 41 GTCCAGCGGACTCTGGCTGCCAAGAACCTGTCCCATGCCAA GTCCAGCGGACTCTGGCTGCCAATAACCTGTCCCATGCCAA < 41bp 0.811097983793265 0.439478992339538 0.140183 0.070834905 prediction 0.622195967586529 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24909321 chr16:24909324 stopgain 1.000 5 24 hm5C_associated_SNPs_53036 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48388 DeepMRMD:0;iRNA_m5C:0 48389 chr17 57851127 57851127 1 + G T THYM 57851125 + 57851105 57851145 41 TTTCACCTAGGGTATCGGTACAGCAATCGGAGAGCTGCCTC TTTCACCTAGGGTATCGGTACATCAATCGGAGAGCTGCCTC < 41bp 0.81837334551973 0.507284630139004 0.25568798 0.17780492 prediction 0.622177430761452 Functional Loss - VMP1 ENSG00000062716 CDS Human protein_coding chr17:57851125 chr17:57851127 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_53037 0 0 1 0 0 Nucleus 0.500231644265957 0.500231643921245 0 6.89423185207261e-10 hm5C_site_48389 DeepMRMD:0;iRNA_m5C:6.89423185207261e-10 48390 chr6 43111207 43111207 1 + G T BRCA 43111204 + 43111184 43111224 41 CCTGGCAGCCCTCCCCCCTACAAGATGATCCAGACCATTGG CCTGGCAGCCCTCCCCCCTACAATATGATCCAGACCATTGG < 41bp 0.811082124932127 0.44490730298565 0.8233263 0.0870156 prediction 0.622164249864254 Functional Loss - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43111204 chr6:43111207 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_53038 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.6466526 0 hm5C_site_48390 DeepMRMD:0.6466526;iRNA_m5C:0 48391 chr6 27101145 27101145 1 + G T LUAD 27101142 + 27101122 27101162 41 ACGAGGAGCTCAACAAGCTGCTGGGCAAAGTCACCATCGCA ACGAGGAGCTCAACAAGCTGCTGTGCAAAGTCACCATCGCA < 41bp 0.811069247149977 0.460037806216439 0.20119464 0.05306849 prediction 0.622138494299954 Functional Loss - HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101142 chr6:27101145 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_53039 0 0 1 0 0 Ribosome 0.500231701400093 0.50023157935388 0 2.44092426271436e-07 hm5C_site_48391 DeepMRMD:0;iRNA_m5C:2.44092426271436e-07 48392 chr12 130648338 130648338 1 + G T LUAD 130648336 + 130648316 130648356 41 TACCTCATCCGCCTCTTCGCCGGCGCCGAGAGCATCGCCTG TACCTCATCCGCCTCTTCGCCGTCGCCGAGAGCATCGCCTG < 41bp 0.831535360623989 0.520466295338149 0.90327835 0.5559254 prediction 0.62213813057168 Functional Loss - FZD10 ENSG00000111432 CDS Human protein_coding chr12:130648336 chr12:130648338 nonsynonymous SNV 0.988 4 23 hm5C_associated_SNPs_53040 0 0 0 0 0 exosome 0.50023164380539 0.500231656899593 0.6947059 0 hm5C_site_48392 DeepMRMD:0.6947059;iRNA_m5C:0 48393 chr22 40803271 40803271 1 + G T STAD 40803269 + 40803249 40803289 41 ACGGAACTGGTGGCTGACCTCCGGGAAGCCATCCTGCGCGT ACGGAACTGGTGGCTGACCTCCTGGAAGCCATCCTGCGCGT < 41bp 0.828613916871943 0.517561546687515 0.70766985 0.14728987 prediction 0.622104740368856 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803269 chr22:40803271 nonsynonymous SNV 0.984 4 23 hm5C_associated_SNPs_53041 0 0 1 0 2 Cytosol 0.500231643925378 0.50023164392109 0.4153397 8.57536264220471e-12 hm5C_site_48393 DeepMRMD:0.4153397;iRNA_m5C:8.57536264220471e-12 48394 chr17 78210787 78210787 1 + G T LUAD 78210784 + 78210764 78210804 41 TGCGTACTCCTTCGAGGTGACTGGATACCAGCCTTTCATCC TGCGTACTCCTTCGAGGTGACTGTATACCAGCCTTTCATCC < 41bp 0.88223301601176 0.571192659858713 0.91255116 0.8704942 prediction 0.622080712306094 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210784 chr17:78210787 nonsynonymous SNV 0.983 4 24 hm5C_associated_SNPs_53042 0 0 1 0 1 chromatin 0.500231643914187 0.500231643921092 0.0841139200000001 0 hm5C_site_48394 DeepMRMD:0.0841139200000001;iRNA_m5C:0 48395 chr5 96215790 96215790 1 + G T SARC 96215787 + 96215767 96215807 41 AGATTCAAGATACATGAAACCAGGAAAAGAACTGAAAGTTT AGATTCAAGATACATGAAACCAGTAAAAGAACTGAAAGTTT < 41bp 0.811030079284304 0.462734100589519 0.89697576 0.7931979 prediction 0.622060158568607 Functional Loss - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96215787 chr5:96215790 nonsynonymous SNV 0.728 0 24 hm5C_associated_SNPs_53043 0 0 0 0 0 exosome 0.500231845056655 0.500233254592841 0.20755572 0 hm5C_site_48395 DeepMRMD:0.20755572;iRNA_m5C:0 48396 chr14 35409382 35409382 1 + G T COAD 35409379 + 35409359 35409399 41 TTACCAGATCAGGGAATAGCCAAGGCAACACCAGAGGAATT TTACCAGATCAGGGAATAGCCAATGCAACACCAGAGGAATT < 41bp 0.811027095846374 0.461732197274275 0.7690799 0.53014076 prediction 0.622054191692748 Functional Loss - IGBP1P1 ENSG00000226677 ncRNA_exonic Human processed_pseudogene chr14:35409379 chr14:35409382 . . 0 24 hm5C_associated_SNPs_53044 0 0 0 0 0 unknown 0.500231643920718 0.500231645938261 0.47787828 0 hm5C_site_48396 DeepMRMD:0.47787828;iRNA_m5C:0 48397 chr6 111498746 111498746 1 + A C SARC 111498742 + 111498722 111498762 41 AGCGGATCCTCCCTCTTTTCCAGGAAAAAGTTCAGTCCTCC AGCGGATCCTCCCTCTTTTCCAGGCAAAAGTTCAGTCCTCC < 41bp 0.811026193410059 0.425556937983617 0.7875414 0.82006896 prediction 0.622052386820118 Functional Loss - SLC16A10 ENSG00000112394 CDS Human protein_coding chr6:111498742 chr6:111498746 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_53045 0 0 0 0 0 cytosol 0.500231643932748 0.500231657779784 0 0 hm5C_site_48397 DeepMRMD:0;iRNA_m5C:0 48398 chr1 90048770 90048770 1 + G T UCEC 90048767 + 90048747 90048787 41 CCTCTGAAACTCTCCAAGTCCAAGATTTTGCTTTCGTCCTC CCTCTGAAACTCTCCAAGTCCAATATTTTGCTTTCGTCCTC < 41bp 0.87173384112664 0.560712463582457 0.18773007 0.098398626 prediction 0.622042755088368 Functional Loss - LRRC8B ENSG00000197147 CDS Human protein_coding chr1:90048767 chr1:90048770 nonsynonymous SNV 0.987 1 24 hm5C_associated_SNPs_53046 0 0 1 0 0 Endoplasmic reticulum 0.500231643935311 0.500231643921092 0 2.84372525527488e-11 hm5C_site_48398 DeepMRMD:0;iRNA_m5C:2.84372525527488e-11 48399 chr1 205238491 205238491 1 + G T LUAD 205238488 + 205238468 205238508 41 ATGCAGCAGGGGCTGAAGGACGTGGGCGCCAACGTGCGCGC ATGCAGCAGGGGCTGAAGGACGTTGGCGCCAACGTGCGCGC < 41bp 0.811020824711474 0.436225833606201 0.6859083 0.28352493 prediction 0.622041649422947 Functional Loss - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205238488 chr1:205238491 synonymous SNV . 0 24 hm5C_associated_SNPs_53047 0 0 0 0 0 chromatin 0.500231663860743 0.500231374661081 0.3718166 5.78399323991619e-07 hm5C_site_48399 DeepMRMD:0.3718166;iRNA_m5C:5.78399323991619e-07 48400 chr11 55540983 55540983 1 + G T UCEC 55540980 + 55540960 55541000 41 TCTTGGGTTTTTCAGAATACCCAGAAATCCAGGTTCCACTC TCTTGGGTTTTTCAGAATACCCATAAATCCAGGTTCCACTC < 41bp 0.811017486234906 0.472081794147019 0.86623794 0.16259286 prediction 0.622034972469813 Functional Loss - OR5D13 ENSG00000198877 CDS Human other chr11:55540980 chr11:55540983 stopgain 0.000 0 24 hm5C_associated_SNPs_53048 0 0 0 0 0 unknown 0.500231643847668 0.500231643910123 0.73247588 0 hm5C_site_48400 DeepMRMD:0.73247588;iRNA_m5C:0 48401 chr11 82880562 82880562 1 + G T COAD 82880559 + 82880539 82880579 41 ATTACATGGTCAGCCAGGTCCTAGATTTGAAAGGACTCCTG ATTACATGGTCAGCCAGGTCCTATATTTGAAAGGACTCCTG < 41bp 0.811015796495122 0.458341390734462 0.38158432 0.35114852 prediction 0.622031592990245 Functional Loss - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82880559 chr11:82880562 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53049 0 0 1 0 0 Nucleus 0.500231643938001 0.500231643924224 0 2.7553959114357e-11 hm5C_site_48401 DeepMRMD:0;iRNA_m5C:2.7553959114357e-11 48402 chr15 24921910 24921910 1 + G T HNSC 24921908 + 24921888 24921928 41 TTGCCGATTCCGCTGATGTCCGGAAAGAGGATGCCTGATGA TTGCCGATTCCGCTGATGTCCGTAAAGAGGATGCCTGATGA < 41bp 0.816721931964755 0.505712195734395 0.52115387 0.23186725 prediction 0.62201947246072 Functional Loss - NPAP1 ENSG00000185823 CDS Human protein_coding chr15:24921908 chr15:24921910 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_53050 0 0 0 0 0 Nucleus 0.500231644213679 0.500231644176513 0.04230774 7.43320960339133e-11 hm5C_site_48402 DeepMRMD:0.04230774;iRNA_m5C:7.43320960339133e-11 48403 chr16 20818407 20818407 1 + G T UCEC 20818404 + 20818384 20818424 41 GATCTCGAGGAGAGTCAGCCCGAGGCCAAGGTGAGCAACGG GATCTCGAGGAGAGTCAGCCCGATGCCAAGGTGAGCAACGG < 41bp 0.880060915686535 0.569052165430374 0.88295364 0.6629194 prediction 0.622017500512323 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20818404 chr16:20818407 nonsynonymous SNV 0.575 0 24 hm5C_associated_SNPs_53051 0 0 0 0 1 unknown 0.500231643921092 0.500231644125239 0.44006848 0 hm5C_site_48403 DeepMRMD:0.44006848;iRNA_m5C:0 48404 chr4 151504729 151504729 1 + G T UCEC 151504727 + 151504707 151504747 41 TGCACCGGGATCTGGCCTCGCAGCGCGGCACAGTGGCCTAT TGCACCGGGATCTGGCCTCGCATCGCGGCACAGTGGCCTAT < 41bp 0.810991277820688 0.484247262801281 0.7961712 0.33246797 prediction 0.621982555641376 Functional Loss - MAB21L2 ENSG00000181541 CDS Human protein_coding chr4:151504727 chr4:151504729 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_53052 0 0 1 0 0 nucleus 0.500231646109054 0.50023164397954 0.5923424 4.25902824119362e-09 hm5C_site_48404 DeepMRMD:0.5923424;iRNA_m5C:4.25902824119362e-09 48405 chr17 56233212 56233212 1 + G T COAD 56233209 + 56233189 56233229 41 GAGGTCCCACTCGGGAAAGGCAAGGAGGAAGGCAGCTTCCA GAGGTCCCACTCGGGAAAGGCAATGAGGAAGGCAGCTTCCA < 41bp 0.810987841441859 0.442749716801453 0.78534794 0.3257788 prediction 0.621975682883718 Functional Loss - OR4D1 ENSG00000141194 CDS Human protein_coding chr17:56233209 chr17:56233212 nonsynonymous SNV 0.917 3 24 hm5C_associated_SNPs_53053 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.57069588 0 hm5C_site_48405 DeepMRMD:0.57069588;iRNA_m5C:0 48406 chr17 72368025 72368025 1 + G T UCEC 72368023 + 72368003 72368043 41 AGGGAGCAGTGCTGGCCCGCCAGGTGCCCCAGGCTGTGGTG AGGGAGCAGTGCTGGCCCGCCATGTGCCCCAGGCTGTGGTG < 41bp 0.852590706941757 0.541606055561107 0.90980023 0.48747683 prediction 0.621969302761301 Functional Loss - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72368023 chr17:72368025 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_53054 0 0 0 0 0 exosome 0.500231643935494 0.500231643949974 0.81960046 0 hm5C_site_48406 DeepMRMD:0.81960046;iRNA_m5C:0 48407 chr9 92220729 92220729 1 + G T LUAD 92220727 + 92220707 92220747 41 GCGTGGGCGATGTGCAGCGGCTGGCGGCTATCGTGGGCGCC GCGTGGGCGATGTGCAGCGGCTTGCGGCTATCGTGGGCGCC < 41bp 0.813060661940082 0.50209134035887 0.43497917 0.1824969 prediction 0.621938643162423 Functional Loss - GADD45G ENSG00000130222 CDS Human protein_coding chr9:92220727 chr9:92220729 synonymous SNV . 0 23 hm5C_associated_SNPs_53055 0 0 0 0 1 exosome 0.500231643254595 0.500231641847397 0 2.81439738181177e-09 hm5C_site_48407 DeepMRMD:0;iRNA_m5C:2.81439738181177e-09 48408 chr19 1077968 1077968 1 + G T SARC 1077966 + 1077946 1077986 41 GCGGAGGAGGAGCAGGCTGGCAGCGCGCCGGGAGCAGGCAG GCGGAGGAGGAGCAGGCTGGCATCGCGCCGGGAGCAGGCAG < 41bp 0.837154448497672 0.5261859116472 0.868273 0.81969154 prediction 0.621937073700944 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1077966 chr19:1077968 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_53056 0 0 1 0 1 chromatin 0.50023164391993 0.500231643921093 0.0971629199999999 0 hm5C_site_48408 DeepMRMD:0.0971629199999999;iRNA_m5C:0 48409 chr20 45353864 45353864 1 + G T HNSC 45353862 + 45353842 45353882 41 TGGGGGCTCTCCTCGCCTCCCTGGTTGGTGGCTTCCTCATT TGGGGGCTCTCCTCGCCTCCCTTGTTGGTGGCTTCCTCATT < 41bp 0.834098176401177 0.52313100838756 0.255214 0.07003382 prediction 0.621934336027234 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45353862 chr20:45353864 synonymous SNV . 0 23 hm5C_associated_SNPs_53057 0 0 1 0 0 Nucleus 0.50023164392109 0.500231643921092 0 0 hm5C_site_48409 DeepMRMD:0;iRNA_m5C:0 48410 chr12 21608947 21608947 1 + G T UCEC 21608944 + 21608924 21608964 41 TTTAGGAAGGAAAAAGGAAGCTAGAAGCAAATCTAAAGCAG TTTAGGAAGGAAAAAGGAAGCTATAAGCAAATCTAAAGCAG < 41bp 0.835260172558068 0.524310150074128 0.22327003 0.186131 prediction 0.62190004496788 Functional Loss - PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21608944 chr12:21608947 nonsynonymous SNV 0.096 0 24 hm5C_associated_SNPs_53058 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643921083 0 1.86517468137026e-14 hm5C_site_48410 DeepMRMD:0;iRNA_m5C:1.86517468137026e-14 48411 chr7 127235579 127235579 1 + G T UCEC 127235576 + 127235556 127235596 41 CGTTATTTGGAGTCCAATGGCAAGGACGTGTTTTGCACTTC CGTTATTTGGAGTCCAATGGCAATGACGTGTTTTGCACTTC < 41bp 0.810945736427271 0.41691257508392 0.6767338 0.35781157 prediction 0.621891472854542 Functional Loss - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127235576 chr7:127235579 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_53059 0 0 0 0 0 exosome 0.500231643921109 0.500231643917101 0.3534676 8.01558819318871e-12 hm5C_site_48411 DeepMRMD:0.3534676;iRNA_m5C:8.01558819318871e-12 48412 chr19 35501099 35501099 1 + G T LUAD 35501096 + 35501076 35501116 41 AACATCTTCCGCTGGGAGACCACGGTGAGCCCGCAGCGGGG AACATCTTCCGCTGGGAGACCACTGTGAGCCCGCAGCGGGG < 41bp 0.810940734924254 0.43126189931663 0.41587797 0.09412256 prediction 0.621881469848508 Functional Loss - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35501096 chr19:35501099 synonymous SNV . 0 24 hm5C_associated_SNPs_53060 0 0 1 0 1 Endoplasmic reticulum 0.500231643921093 0.500231652197359 0 0 hm5C_site_48412 DeepMRMD:0;iRNA_m5C:0 48413 chr13 26974649 26974649 1 + G T LUAD 26974647 + 26974627 26974667 41 TTACCTCAGAACAGGCTATGCAGGACCCCTATTTCTTAGAA TTACCTCAGAACAGGCTATGCATGACCCCTATTTCTTAGAA < 41bp 0.811873758754442 0.500954601712447 0.07996428 0.0485816 prediction 0.621838314083991 Functional Loss - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26974647 chr13:26974649 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53061 0 0 1 0 1 Cytosol 0.500231643990769 0.500231643921091 0 1.39356082229369e-10 hm5C_site_48413 DeepMRMD:0;iRNA_m5C:1.39356082229369e-10 48414 chr1 27269461 27269461 1 + G T UCEC 27269459 + 27269439 27269479 41 GGTGGGGCTCAAGGGGCAGCCAGCGATCATTGATGGGGAGC GGTGGGGCTCAAGGGGCAGCCATCGATCATTGATGGGGAGC < 41bp 0.820210429005302 0.509297801263281 0.83885956 0.2791106 prediction 0.621825255484042 Functional Loss - NUDC ENSG00000090273 CDS Human protein_coding chr1:27269459 chr1:27269461 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_53062 0 0 1 0 2 Ribosome 0.500231643551917 0.500231506905169 0.67771912 2.73293495389737e-07 hm5C_site_48414 DeepMRMD:0.67771912;iRNA_m5C:2.73293495389737e-07 Glomerular filtration rate (creatinine) 48415 chr19 41092770 41092770 1 + G T KIRC 41092767 + 41092747 41092787 41 GCACCCGGAGACTGTGGGCTCGGGGCCTCAGCTCTTCCAGA GCACCCGGAGACTGTGGGCTCGGTGCCTCAGCTCTTCCAGA < 41bp 0.886990960604194 0.576078350858244 0.94113964 0.3556289 prediction 0.621825219491901 Functional Loss - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41092767 chr19:41092770 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_53063 0 0 1 0 2 Ribosome 0.500231643921093 0.500231643921093 0.88227928 0 hm5C_site_48415 DeepMRMD:0.88227928;iRNA_m5C:0 48416 chr18 61264272 61264272 1 + A C SKCM 61264268 + 61264248 61264288 41 TGGAAGAAAGAAAGGTGAATCTGCACTTGCCCCGGTTTGAG TGGAAGAAAGAAAGGTGAATCTGCCCTTGCCCCGGTTTGAG < 41bp 0.881723535222776 0.570812427127216 0.17444927 0.07650927 prediction 0.621822216191119 Functional Loss - SERPINB13 ENSG00000197641 CDS Human protein_coding chr18:61264268 chr18:61264272 nonsynonymous SNV 0.013 2 25 hm5C_associated_SNPs_53064 0 0 0 0 1 unknown 0.500231681056732 0.50023164392074 0 7.4271984118468e-08 hm5C_site_48416 DeepMRMD:0;iRNA_m5C:7.4271984118468e-08 48417 chrX 37028859 37028859 1 + G T UCEC 37028856 + 37028836 37028876 41 AGTCTCCACCTGGAGCCTCCCAAGACTCGTCGAGTGTCCAG AGTCTCCACCTGGAGCCTCCCAATACTCGTCGAGTGTCCAG < 41bp 0.873825991101416 0.562921987690806 0.105371475 0.041139424 prediction 0.62180800682122 Functional Loss - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37028856 chrX:37028859 nonsynonymous SNV 0.007 1 24 hm5C_associated_SNPs_53065 0 0 0 0 0 unknown 0.500231643921106 0.500231643921092 0 2.68673971959288e-14 hm5C_site_48417 DeepMRMD:0;iRNA_m5C:2.68673971959288e-14 48418 chr2 233899170 233899170 1 + G T LUAD 233899168 + 233899148 233899188 41 TGGTGCCCGCCTACGCCTACCGGAAACTTCACCCCATCCAA TGGTGCCCGCCTACGCCTACCGTAAACTTCACCCCATCCAA < 41bp 0.834595655892451 0.523696791967265 0.72055215 0.24070054 prediction 0.621797727850373 Functional Loss - NEU2 ENSG00000115488 CDS Human protein_coding chr2:233899168 chr2:233899170 synonymous SNV . 0 23 hm5C_associated_SNPs_53066 0 0 0 0 0 exosome 0.500231643921307 0.500231643924497 0.4411043 0 hm5C_site_48418 DeepMRMD:0.4411043;iRNA_m5C:0 48419 chr15 91479636 91479636 1 + G T UCEC 91479633 + 91479613 91479653 41 AGATGTGTGAGCTTGGAGCCCAAGAACAAAGTTTTCCAGGA AGATGTGTGAGCTTGGAGCCCAATAACAAAGTTTTCCAGGA < 41bp 0.810858139700929 0.442661871209054 0.57820266 0.27883053 prediction 0.621716279401859 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91479633 chr15:91479636 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53067 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0.15640532 0 hm5C_site_48419 DeepMRMD:0.15640532;iRNA_m5C:0 48420 chr17 43246753 43246753 1 + C A HNSC 43246756 - 43246736 43246776 41 TCCGGGTCCCTGTCATTCATCAGGAACTGGGTGGTGTTGTA TCCGGGTCCCTGTCATTCATCAGTAACTGGGTGGTGTTGTA < 41bp 0.864584172976229 0.553737707066374 0.90316445 0.32503122 prediction 0.621692931819709 Functional Loss - HEXIM2 ENSG00000168517 CDS Human protein_coding chr17:43246756 chr17:43246753 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_53068 0 0 0 0 0 chromatin 0.500243653449324 0.500231643922628 0.8063289 2.40190533919993e-05 hm5C_site_48420 DeepMRMD:0.8063289;iRNA_m5C:2.40190533919993e-05 48421 chrX 105970199 105970199 1 + G T STAD 105970197 + 105970177 105970217 41 CGCGGTGGCTGCGGCTTTTCCAGATTGCTGGCATGGTGCTT CGCGGTGGCTGCGGCTTTTCCATATTGCTGGCATGGTGCTT < 41bp 0.835467760299353 0.524633480150556 0.86207205 0.5587978 prediction 0.621668560297595 Functional Loss - RNF128 ENSG00000133135 CDS Human protein_coding chrX:105970197 chrX:105970199 nonsynonymous SNV 0.508 0 23 hm5C_associated_SNPs_53069 0 0 1 0 0 cytosol 0.500231643921092 0.500202752493029 0.6065485 5.77828561263427e-05 hm5C_site_48421 DeepMRMD:0.6065485;iRNA_m5C:5.77828561263427e-05 48422 chr16 67859858 67859858 1 + G T ACC 67859855 + 67859835 67859875 41 GCCAGCTACGAGGAGGTTCGCAAGGAGCATGAGATCCTCAT GCCAGCTACGAGGAGGTTCGCAATGAGCATGAGATCCTCAT < 41bp 0.810831010922979 0.438531756768908 0.8576362 0.16352433 prediction 0.621662021845957 Functional Loss - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859855 chr16:67859858 nonsynonymous SNV 0.240 2 24 hm5C_associated_SNPs_53070 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.7152724 0 hm5C_site_48422 DeepMRMD:0.7152724;iRNA_m5C:0 48423 chr15 30396069 30396069 1 + G T CESC 30396067 + 30396047 30396087 41 GCCATGACAGCGGCTCGGGACTGGCTCCTTTTCCGCGCCCC GCCATGACAGCGGCTCGGGACTTGCTCCTTTTCCGCGCCCC < 41bp 0.822212675241562 0.511389703479209 0.29243663 0.11886364 prediction 0.621645943524706 Functional Loss - ULK4P3 ENSG00000178081 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:30396067 chr15:30396069 . . 0 23 hm5C_associated_SNPs_53071 0 0 1 0 0 unknown 0.500231643857048 0.500231643921092 0 0 hm5C_site_48423 DeepMRMD:0;iRNA_m5C:0 48424 chr8 53852519 53852519 1 + G T UCEC 53852516 + 53852496 53852536 41 GGCCCGCCAACGCATCGGGCCCGGACCCGGCGCTGAGCTGC GGCCCGCCAACGCATCGGGCCCGTACCCGGCGCTGAGCTGC < 41bp 0.810802747392868 0.463784614287218 0.8661494 0.3258905 prediction 0.621605494785735 Functional Loss - NPBWR1 ENSG00000183729 CDS Human protein_coding chr8:53852516 chr8:53852519 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_53072 0 0 0 0 0 exosome 0.500231643930699 0.500231643921095 0.7322988 1.92079685490398e-11 hm5C_site_48424 DeepMRMD:0.7322988;iRNA_m5C:1.92079685490398e-11 48425 chr1 12854086 12854086 1 + G T UCEC 12854083 + 12854063 12854103 41 GGAGGTGGAAACTTCAAGTGCTGGATTTGCGGGATGTTGAC GGAGGTGGAAACTTCAAGTGCTGTATTTGCGGGATGTTGAC < 41bp 0.876772468334911 0.565973121130532 0.20240071 0.22519943 prediction 0.621598694408758 Functional Loss - PRAMEF1 ENSG00000116721 CDS Human protein_coding chr1:12854083 chr1:12854086 nonsynonymous SNV 0.136 4 24 hm5C_associated_SNPs_53073 0 0 0 0 1 unknown 0.500231643940429 0.500231644820201 0 0 hm5C_site_48425 DeepMRMD:0;iRNA_m5C:0 48426 chr1 182377138 182377138 1 + G T UCEC 182377135 + 182377115 182377155 41 CTCAGACTGACCAAAAGAGCCGAGGAGGTCCTTTGTGGCCT CTCAGACTGACCAAAAGAGCCGATGAGGTCCTTTGTGGCCT < 41bp 0.810789958411105 0.484392886033064 0.9119761 0.7405417 prediction 0.621579916822209 Functional Loss - LINC00272 ENSG00000203729 ncRNA_exonic Human lincRNA chr1:182377135 chr1:182377138 . . 0 24 hm5C_associated_SNPs_53074 0 0 0 0 1 unknown 0.50023164392105 0.500231643866114 0.3428688 1.09871001185979e-10 hm5C_site_48426 DeepMRMD:0.3428688;iRNA_m5C:1.09871001185979e-10 48427 chr3 157154782 157154782 1 + G T LIHC 157154779 + 157154759 157154799 41 TCTGCAGTGTTGGCCGAGAACTCGGATGATTATGATCTCAT TCTGCAGTGTTGGCCGAGAACTCTGATGATTATGATCTCAT < 41bp 0.810751430644825 0.466436854675473 0.30868655 0.117765814 prediction 0.621502861289651 Functional Loss - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157154779 chr3:157154782 synonymous SNV . 0 24 hm5C_associated_SNPs_53075 0 0 0 0 1 exosome 0.500229440896605 0.500397832406921 0 0 hm5C_site_48427 DeepMRMD:0;iRNA_m5C:0 48428 chr22 50277582 50277582 1 + G T CESC 50277580 + 50277560 50277600 41 GGCGCGCTGTTCTCCCAGTACAGCAGCACCCTATACGACGT GGCGCGCTGTTCTCCCAGTACATCAGCACCCTATACGACGT < 41bp 0.816671307182594 0.505923856508957 0.14885032 0.14413992 prediction 0.621494901347274 Functional Loss - ZBED4 ENSG00000100426 CDS Human protein_coding chr22:50277580 chr22:50277582 nonsynonymous SNV 0.808 2 23 hm5C_associated_SNPs_53076 0 0 1 0 0 chromatin 0.500231643921024 0.500231642859917 0 2.12221484829911e-09 hm5C_site_48428 DeepMRMD:0;iRNA_m5C:2.12221484829911e-09 48429 chr22 35811893 35811893 1 + G T UCEC 35811891 + 35811871 35811911 41 TGATGAGGGACCCTTCGTCCCGGAATTTCATCATGGAGGGC TGATGAGGGACCCTTCGTCCCGTAATTTCATCATGGAGGGC < 41bp 0.810731904271557 0.488290197581794 0.5526052 0.19456679 prediction 0.621463808543113 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35811891 chr22:35811893 synonymous SNV . 0 23 hm5C_associated_SNPs_53077 0 0 1 0 2 Cytosol 0.500231644069681 0.500231643942741 0.1052104 2.53879361977738e-10 hm5C_site_48429 DeepMRMD:0.1052104;iRNA_m5C:2.53879361977738e-10 48430 chr3 129695990 129695990 1 + G T CESC 129695988 + 129695968 129696008 41 TGGATGACCTGAGTAGGAGCCAGGGAGCTGAGGAAAAGCGG TGGATGACCTGAGTAGGAGCCATGGAGCTGAGGAAAAGCGG < 41bp 0.810727923646824 0.485058012043619 0.89992344 0.5022135 prediction 0.621455847293648 Functional Loss - TRH ENSG00000170893 CDS Human protein_coding chr3:129695988 chr3:129695990 nonsynonymous SNV 0.016 0 23 hm5C_associated_SNPs_53078 0 0 0 0 0 Cytosol 0.500231643921088 0.500231643921093 0.79541988 0 hm5C_site_48430 DeepMRMD:0.79541988;iRNA_m5C:0 48431 chr14 68112513 68112513 1 + G T UCEC 68112511 + 68112491 68112531 41 CATTTCTCCTCAGAGAACTACAGGATAAGGTCAGTGGGCCA CATTTCTCCTCAGAGAACTACATGATAAGGTCAGTGGGCCA < 41bp 0.816370806829936 0.505650550214509 0.4924882 0.24044615 prediction 0.621440513230854 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68112511 chr14:68112513 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_53079 0 0 1 0 1 Cytosol 0.500231644121549 0.500231644152777 0 0 hm5C_site_48431 DeepMRMD:0;iRNA_m5C:0 48432 chr16 23364156 23364156 1 + G T LUAD 23364153 + 23364133 23364173 41 TCAAGCATTTGCTGAAGGACCTGGATGAGCTGATGGAAGCT TCAAGCATTTGCTGAAGGACCTGTATGAGCTGATGGAAGCT < 41bp 0.810705592763622 0.438066880819051 0.24493155 0.14419392 prediction 0.621411185527245 Functional Loss - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23364153 chr16:23364156 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_53080 0 0 0 0 1 exosome 0.500232128909298 0.500231642035135 0 9.73748325749924e-07 hm5C_site_48432 DeepMRMD:0;iRNA_m5C:9.73748325749924e-07 48433 chr16 28507282 28507282 1 + G T LUSC 28507280 + 28507260 28507300 41 GAAGCCAGGACAATCTCAGGCGGGGAGGAGGCTGAGACAGC GAAGCCAGGACAATCTCAGGCGTGGAGGAGGCTGAGACAGC < 41bp 0.810704511703192 0.486527826487098 0.6799695 0.20946747 prediction 0.621409023406384 Functional Loss - APOBR ENSG00000184730 CDS Human protein_coding chr16:28507280 chr16:28507282 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_53081 0 0 1 0 1 exosome 0.500231511442097 0.500231643913016 0.359939 0 hm5C_site_48433 DeepMRMD:0.359939;iRNA_m5C:0 48434 chr7 27186946 27186946 1 + C A LUAD 27186948 - 27186928 27186968 41 GCCCGGTTTACCCTTGGATGCAGCGGATGAACTCCTGCGCG GCCCGGTTTACCCTTGGATGCATCGGATGAACTCCTGCGCG < 41bp 0.810696137751605 0.489155500157239 0.9373977 0.29400367 prediction 0.62139227550321 Functional Loss - HOXA6 ENSG00000106006 CDS Human protein_coding chr7:27186948 chr7:27186946 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53082 0 0 0 0 2 exosome 0.500231643921092 0.500231643921083 0.8747954 1.97619698383278e-14 hm5C_site_48434 DeepMRMD:0.8747954;iRNA_m5C:1.97619698383278e-14 48435 chr5 121786343 121786343 1 + C A UCEC 121786345 - 121786325 121786365 41 CTAGCCCGGCTGGAGGCTGACAGGCTTCCAAGAACCTGAAT CTAGCCCGGCTGGAGGCTGACATGCTTCCAAGAACCTGAAT < 41bp 0.828186221965058 0.51749492917879 0.8815582 0.192242 prediction 0.621382585572536 Functional Loss - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786345 chr5:121786343 nonsynonymous SNV 0.747 1 23 hm5C_associated_SNPs_53083 0 0 0 0 1 exosome 0.500231644569373 0.500232067718627 0.7631164 0 hm5C_site_48435 DeepMRMD:0.7631164;iRNA_m5C:0 48436 chr19 54403953 54403953 1 + G T LUSC 54403951 + 54403931 54403971 41 GTGTAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACCT GTGTAAGGAGAACGTCTTCCCCTGGACGACAACCCGCACCT < 41bp 0.810677139865924 0.48682935924596 0.8968711 0.11224541 prediction 0.621354279731849 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403951 chr19:54403953 nonsynonymous SNV 0.295 3 23 hm5C_associated_SNPs_53084 0 0 0 0 2 Cytosol 0.500231643336305 0.500231643920661 0.7937422 0 hm5C_site_48436 DeepMRMD:0.7937422;iRNA_m5C:0 48437 chr7 19184872 19184872 1 + G T LUAD 19184869 + 19184849 19184889 41 AGCGCAAGGGCTGGGTCCCCCAAGGAGACCCCGGGTGCGAA AGCGCAAGGGCTGGGTCCCCCAATGAGACCCCGGGTGCGAA < 41bp 0.872868868227916 0.562192079258026 0.74288344 0.09134343 prediction 0.621353577939781 Functional Loss - FERD3L ENSG00000146618 CDS Human protein_coding chr7:19184869 chr7:19184872 synonymous SNV . 0 24 hm5C_associated_SNPs_53085 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.48576688 0 hm5C_site_48437 DeepMRMD:0.48576688;iRNA_m5C:0 48438 chr19 7975355 7975355 1 + G T LUAD 7975352 + 7975332 7975372 41 GTGCAGCAAATGCGGCGCTCCGGGAACAAGGAGGAGAACAA GTGCAGCAAATGCGGCGCTCCGGTAACAAGGAGGAGAACAA < 41bp 0.81066720847593 0.444721394838264 0.9171815 0.72320974 prediction 0.621334416951861 Functional Loss - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7975352 chr19:7975355 synonymous SNV . 0 24 hm5C_associated_SNPs_53086 0 0 1 2 1 Cytosol 0.500231641458157 0.500231640433704 0.38794352 2.04890548971548e-09 hm5C_site_48438 DeepMRMD:0.38794352;iRNA_m5C:2.04890548971548e-09 48439 chr10 134016257 134016257 1 + G T HNSC 134016255 + 134016235 134016275 41 ACGGGAAGATGTTTGTCACCCCGGGGGCGGGCCGCTTCGTC ACGGGAAGATGTTTGTCACCCCTGGGGCGGGCCGCTTCGTC < 41bp 0.810660469433467 0.480030292632372 0.9157572 0.28129497 prediction 0.621320938866934 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016255 chr10:134016257 synonymous SNV . 0 23 hm5C_associated_SNPs_53087 0 0 0 0 0 Endoplasmic reticulum 0.500231643920843 0.500231643920946 0.8315144 0 hm5C_site_48439 DeepMRMD:0.8315144;iRNA_m5C:0 48440 chr6 106960255 106960255 1 + G T CESC 106960253 + 106960233 106960273 41 GCGGCCGTAGGTCGGGGAGGCGGAGGGGGTCGCAGAAATCC GCGGCCGTAGGTCGGGGAGGCGTAGGGGGTCGCAGAAATCC < 41bp 0.810652668044989 0.478511749415778 0.90576595 0.90203375 prediction 0.621305336089978 Functional Loss - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:106960253 chr6:106960255 synonymous SNV . 0 23 hm5C_associated_SNPs_53088 0 0 0 0 0 unknown 0.500231643878113 0.500231643921093 0.00746440000000015 0 hm5C_site_48440 DeepMRMD:0.00746440000000015;iRNA_m5C:0 48441 chr1 151372962 151372962 1 + G T COAD 151372959 + 151372939 151372979 41 AGATGGACACAGCTATAGTCCTAGAGCTATTCATTCATGGC AGATGGACACAGCTATAGTCCTATAGCTATTCATTCATGGC < 41bp 0.810645528520483 0.453550699936402 0.17978776 0.20664585 prediction 0.621291057040966 Functional Loss - PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151372959 chr1:151372962 nonsynonymous SNV 0.996 2 24 hm5C_associated_SNPs_53089 0 0 1 0 1 Ribosome 0.500231702091061 0.500231643921343 0 1.16339434308443e-07 hm5C_site_48441 DeepMRMD:0;iRNA_m5C:1.16339434308443e-07 48442 chr7 105641932 105641932 1 + G T TGCT 105641930 + 105641910 105641950 41 CGACACGAGTGTACACAGTCCTGGAGGAACTGAGTCCAGGA CGACACGAGTGTACACAGTCCTTGAGGAACTGAGTCCAGGA < 41bp 0.814135482503745 0.503494900964192 0.17563769 0.04935947 prediction 0.621281163079105 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105641930 chr7:105641932 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53090 0 0 0 3 0 cytosol 0.500231623387594 0.500231642131526 0 0 hm5C_site_48442 DeepMRMD:0;iRNA_m5C:0 48443 chr14 24108147 24108147 1 + G T UCEC 24108145 + 24108125 24108165 41 AGGCTTTCTGTGAGGATGAGCAGCACCGGGATAGACAGGAA AGGCTTTCTGTGAGGATGAGCATCACCGGGATAGACAGGAA < 41bp 0.81468471821729 0.504045869163014 0.33685833 0.12678626 prediction 0.621277698108551 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108145 chr14:24108147 nonsynonymous SNV 0.123 4 23 hm5C_associated_SNPs_53091 0 0 1 0 1 Ribosome 0.500231643920808 0.500231377288261 0 5.3326509408258e-07 hm5C_site_48443 DeepMRMD:0;iRNA_m5C:5.3326509408258e-07 48444 chr17 19232094 19232094 1 + G T UCEC 19232091 + 19232071 19232111 41 GCCACCGTACAATCTGTCCCCAAGAACTCGGACCCCTGGGC GCCACCGTACAATCTGTCCCCAATAACTCGGACCCCTGGGC < 41bp 0.810638769247699 0.438905105546693 0.18701494 0.01916033 prediction 0.621277538495398 Functional Loss - EPN2 ENSG00000072134 CDS Human protein_coding chr17:19232091 chr17:19232094 nonsynonymous SNV 0.299 1 24 hm5C_associated_SNPs_53092 0 0 1 0 1 Nucleus 0.500231643921093 0.500231643921093 0 0 hm5C_site_48444 DeepMRMD:0;iRNA_m5C:0 48445 chr19 38795511 38795511 1 + C A rs7248001 38795514 - 38795494 38795534 41 TTGGCCTTGCCCGGGATGCTCTCGTGCTGCTTGGAGCCAGC TTGGCCTTGCCCGGGATGCTCTCTTGCTGCTTGGAGCCAGC < 41bp 0.810628328690295 0.438716414161669 0.48892343 0.09719017 prediction 0.62125665738059 Functional Loss - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795514 chr19:38795511 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_53093 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921258 0 0 hm5C_site_48445 DeepMRMD:0;iRNA_m5C:0 48446 chr2 201758087 201758087 1 + A T LUAD 201758083 + 201758063 201758103 41 AGACCTGGACAAAGTCATGTCTGCAGTGAAAGGAATTGACG AGACCTGGACAAAGTCATGTCTGCTGTGAAAGGAATTGACG < 41bp 0.810619179928256 0.494091349540311 0.13943607 0.09836209 prediction 0.621238359856512 Functional Loss - NIF3L1 ENSG00000196290 CDS Human protein_coding chr2:201758083 chr2:201758087 synonymous SNV . 0 25 hm5C_associated_SNPs_53094 0 0 1 0 1 Ribosome 0.500231643139902 0.500231643614029 0 0 hm5C_site_48446 DeepMRMD:0;iRNA_m5C:0 48447 chr10 112360249 112360249 1 + G T UCEC 112360246 + 112360226 112360266 41 TAAATTAGAAGGTATTATTACTCGAGTAGAGACTTATCTCA TAAATTAGAAGGTATTATTACTCTAGTAGAGACTTATCTCA < 41bp 0.810613969584693 0.482604049337259 0.22201917 0.8361528 prediction 0.621227939169387 Functional Loss - SMC3 ENSG00000108055 CDS Human protein_coding chr10:112360246 chr10:112360249 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53095 0 0 1 0 2 Ribosome 0.500231643910611 0.500231643943215 0 0 hm5C_site_48447 DeepMRMD:0;iRNA_m5C:0 48448 chr6 116757745 116757745 1 + G T STAD 116757742 + 116757722 116757762 41 CCTGTGGACAGGTGAGGCCACAGGACAGTCTGCCTTTGCAC CCTGTGGACAGGTGAGGCCACAGTACAGTCTGCCTTTGCAC < 41bp 0.810607857574297 0.450291116678211 0.52107155 0.16509297 prediction 0.621215715148594 Functional Loss - DSE ENSG00000111817 CDS Human protein_coding chr6:116757742 chr6:116757745 nonsynonymous SNV 0.701 1 24 hm5C_associated_SNPs_53096 0 0 1 0 0 nucleolus 0.500231715563819 0.500231757721323 0.0421431000000001 0 hm5C_site_48448 DeepMRMD:0.0421431000000001;iRNA_m5C:0 48449 chr10 99361669 99361669 1 + G T SARC 99361667 + 99361647 99361687 41 TCCTGGGGGCTCAGGTGTGCCAGCTGGAGCGACTGTGCTGC TCCTGGGGGCTCAGGTGTGCCATCTGGAGCGACTGTGCTGC < 41bp 0.810607637936785 0.47829508462892 0.87344813 0.3056149 prediction 0.62121527587357 Functional Loss - HOGA1 ENSG00000155252;ENSG00000241935;ENSG00000249967 CDS Human other chr10:99361667 chr10:99361669 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_53097 0 0 1 0 2 nucleus 0.500231645413094 0.500231643921803 0.74689626 2.98258107100935e-09 hm5C_site_48449 DeepMRMD:0.74689626;iRNA_m5C:2.98258107100935e-09 48450 chr12 7045579 7045579 1 + A C UCEC 7045575 + 7045555 7045595 41 TTCATCCTCTAGTAGTAGCTCTGCAGCAGCCTCCTCTTCCA TTCATCCTCTAGTAGTAGCTCTGCCGCAGCCTCCTCTTCCA < 41bp 0.81060045917801 0.41430771157188 0.078167886 0.0729363 prediction 0.621200918356019 Functional Loss - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7045575 chr12:7045579 synonymous SNV . 0 25 hm5C_associated_SNPs_53098 0 0 1 0 0 Endoplasmic reticulum 0.500232316101068 0.500231643925717 0 1.34435070164862e-06 hm5C_site_48450 DeepMRMD:0;iRNA_m5C:1.34435070164862e-06 48451 chr9 140109136 140109136 1 + G T COAD 140109134 + 140109114 140109154 41 AGCTCTTCATGCTGCAGCCGCGGGAGCCAGGTGAGCCCAGC AGCTCTTCATGCTGCAGCCGCGTGAGCCAGGTGAGCCCAGC < 41bp 0.83105242369264 0.52045805145011 0.91122115 0.3331926 prediction 0.62118874448506 Functional Loss - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140109134 chr9:140109136 synonymous SNV . 0 23 hm5C_associated_SNPs_53099 0 0 1 0 1 chromatin 0.500231643916089 0.500231648503393 0.8224423 0 hm5C_site_48451 DeepMRMD:0.8224423;iRNA_m5C:0 48452 chr1 76272741 76272741 1 + G T UCEC 76272739 + 76272719 76272759 41 GTAGAAGGGAGAGGACTTGCCAGAGGTGAAATAGGAATGGC GTAGAAGGGAGAGGACTTGCCATAGGTGAAATAGGAATGGC < 41bp 0.816700068858324 0.506119253334806 0.8920775 0.8170418 prediction 0.621161631047037 Functional Loss - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76272739 chr1:76272741 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53100 0 0 0 0 2 exosome 0.500231640127669 0.500231643921092 0.1500714 0 hm5C_site_48452 DeepMRMD:0.1500714;iRNA_m5C:0 48453 chr15 40757569 40757569 1 + G T COAD 40757567 + 40757547 40757587 41 AAGTGTTTGCATCGCGACATCAGGACCAGAACAGTGTGGCC AAGTGTTTGCATCGCGACATCATGACCAGAACAGTGTGGCC < 41bp 0.810577220461826 0.492429026477144 0.38336337 0.079126775 prediction 0.621154440923652 Functional Loss - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40757567 chr15:40757569 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53101 0 0 1 0 3 chromatin 0.500231643921093 0.500231643926364 0 0 hm5C_site_48453 DeepMRMD:0;iRNA_m5C:0 48454 chr19 501802 501802 1 + G T COAD 501799 + 501779 501819 41 ACCTCCCCGGAGCCTCCCGACAAGACCTCCCCGGAGCCCGC ACCTCCCCGGAGCCTCCCGACAATACCTCCCCGGAGCCCGC < 41bp 0.810575689488326 0.440429704560754 0.28996682 0.08508587 prediction 0.621151378976653 Functional Loss - MADCAM1 ENSG00000099866 CDS Human protein_coding chr19:501799 chr19:501802 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_53102 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_48454 DeepMRMD:0;iRNA_m5C:0 48455 chr2 219754782 219754782 1 + G T LUAD 219754780 + 219754760 219754800 41 CCGTGTCCAATGCGTGTGCCCTGGGCAAACTGAAGGCCTGT CCGTGTCCAATGCGTGTGCCCTTGGCAAACTGAAGGCCTGT < 41bp 0.810572801999294 0.485561895774296 0.56696177 0.18301362 prediction 0.621145603998587 Functional Loss - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219754780 chr2:219754782 synonymous SNV . 0 23 hm5C_associated_SNPs_53103 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.13392354 0 hm5C_site_48455 DeepMRMD:0.13392354;iRNA_m5C:0 48456 chr11 65721086 65721086 1 + G T LUSC 65721084 + 65721064 65721104 41 AGCGGCAGGAGGAGCGGCAGCAGGCCGAGCTGCGGCGGGCC AGCGGCAGGAGGAGCGGCAGCATGCCGAGCTGCGGCGGGCC < 41bp 0.810560925454155 0.475802952680683 0.88287795 0.45253903 prediction 0.621121850908311 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65721084 chr11:65721086 unknown 0.879 1 23 hm5C_associated_SNPs_53104 0 0 0 0 1 exosome 0.500231643921115 0.500231657478137 0.7657559 0 hm5C_site_48456 DeepMRMD:0.7657559;iRNA_m5C:0 48457 chr7 31692297 31692297 1 + G T LUAD 31692295 + 31692275 31692315 41 TGGCCAGGAGGCTCCCTGTTCAGGTGGGACCCAGTTGGCTG TGGCCAGGAGGCTCCCTGTTCATGTGGGACCCAGTTGGCTG < 41bp 0.831597947941642 0.521046805306726 0.8747655 0.1893383 prediction 0.621102285269833 Functional Loss - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31692295 chr7:31692297 nonsynonymous SNV 0.005 3 23 hm5C_associated_SNPs_53105 0 0 0 0 1 exosome 0.500231634604052 0.500231708255039 0.749531 0 hm5C_site_48457 DeepMRMD:0.749531;iRNA_m5C:0 48458 chr11 77301163 77301163 1 + G T BLCA 77301161 + 77301141 77301181 41 CCCGGCAGCAGCTGCACAGGCCGGTGGCCCACGCCTTCGTC CCCGGCAGCAGCTGCACAGGCCTGTGGCCCACGCCTTCGTC < 41bp 0.81054963116177 0.460879883462551 0.4353636 0.17451924 prediction 0.62109926232354 Functional Loss - AQP11 ENSG00000178301 CDS Human protein_coding chr11:77301161 chr11:77301163 synonymous SNV . 0 23 hm5C_associated_SNPs_53106 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921093 0 0 hm5C_site_48458 DeepMRMD:0;iRNA_m5C:0 48459 chr2 97217534 97217534 1 + G T UCEC 97217531 + 97217511 97217551 41 TGCTGGGTGTCCCCCATGGCCAAGGTCCCAGCCGAGAGCCC TGCTGGGTGTCCCCCATGGCCAATGTCCCAGCCGAGAGCCC < 41bp 0.810530518573517 0.427747342011244 0.20880058 0.01991731 prediction 0.621061037147034 Functional Loss - ARID5A ENSG00000196843 CDS Human protein_coding chr2:97217531 chr2:97217534 nonsynonymous SNV 0.900 3 24 hm5C_associated_SNPs_53107 0 0 1 0 0 Cytosol 0.500231643921141 0.500231643921092 0 9.70334923522387e-14 hm5C_site_48459 DeepMRMD:0;iRNA_m5C:9.70334923522387e-14 48460 chr10 118215324 118215324 1 + G T UCEC 118215322 + 118215302 118215342 41 GGAAGCTGGGTCAAGGATACCAGGCCTTGGAAGAATAACTG GGAAGCTGGGTCAAGGATACCATGCCTTGGAAGAATAACTG < 41bp 0.831296812009855 0.520772732040558 0.28072703 0.017682642 prediction 0.621048159938594 Functional Loss - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118215322 chr10:118215324 nonsynonymous SNV 0.978 5 23 hm5C_associated_SNPs_53108 0 0 0 0 2 exosome 0.500231643921089 0.500231643921239 0 0 hm5C_site_48460 DeepMRMD:0;iRNA_m5C:0 48461 chr11 66325626 66325626 1 + G T OV 66325624 + 66325604 66325644 41 AGTTCCGGCAGAAGGCCTCCCTGCACGAAGCCTGGACCCGG AGTTCCGGCAGAAGGCCTCCCTTCACGAAGCCTGGACCCGG < 41bp 0.810517993099478 0.490885381265757 0.34883085 0.23087221 prediction 0.621035986198957 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325624 chr11:66325626 unknown . 0 23 hm5C_associated_SNPs_53109 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_48461 DeepMRMD:0;iRNA_m5C:0 48462 chr7 123594195 123594195 1 + G T BLCA 123594192 + 123594172 123594212 41 AGGCCACTGAGAAAGCAAAACAAGAATTTGAAAAGGCAGGG AGGCCACTGAGAAAGCAAAACAATAATTTGAAAAGGCAGGG < 41bp 0.810510546153409 0.453530881376523 0.25137228 0.45052844 prediction 0.621021092306818 Functional Loss - SPAM1 ENSG00000106304 CDS Human protein_coding chr7:123594192 chr7:123594195 stopgain 0.135 0 24 hm5C_associated_SNPs_53110 0 0 0 0 0 Nucleus 0.500231643921094 0.500231645431283 0 0 hm5C_site_48462 DeepMRMD:0;iRNA_m5C:0 48463 chr9 311994 311994 1 + G T LUSC 311991 + 311971 312011 41 AAACGTGCTGTGCGACGTGTCTGGGAAAGGCCCCGTCACTG AAACGTGCTGTGCGACGTGTCTGTGAAAGGCCCCGTCACTG < 41bp 0.810506963746813 0.494621929575504 0.27602068 0.019830197 prediction 0.621013927493627 Functional Loss - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:311991 chr9:311994 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53111 0 0 1 0 1 Cytosol 0.500215215917196 0.500230901648528 0 0 hm5C_site_48463 DeepMRMD:0;iRNA_m5C:0 48464 chr2 27373006 27373006 1 + G T LUAD 27373004 + 27372984 27373024 41 TGTGCAGAGCGAGGCCAGTCCTGAGAATGCCGCGCGGGAGC TGTGCAGAGCGAGGCCAGTCCTTAGAATGCCGCGCGGGAGC < 41bp 0.81050637452777 0.491467984403881 0.84589887 0.58694375 prediction 0.621012749055541 Functional Loss - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373004 chr2:27373006 stopgain 0.626 1 23 hm5C_associated_SNPs_53112 0 0 0 0 1 exosome 0.500231643921093 0.500231643921093 0.51791024 0 hm5C_site_48464 DeepMRMD:0.51791024;iRNA_m5C:0 48465 chr19 15734040 15734040 1 + G T SKCM 15734038 + 15734018 15734058 41 CCCTGTGGACGGCGCTTCCACAGGGCCTGCAGACTGGTGCA CCCTGTGGACGGCGCTTCCACATGGCCTGCAGACTGGTGCA < 41bp 0.812941087118673 0.502443820769765 0.79665816 0.195515 prediction 0.620994532697815 Functional Loss - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15734038 chr19:15734040 . 0.167 1 23 hm5C_associated_SNPs_53113 0 0 0 0 0 unknown 0.500231643921092 0.500230546368363 0.59331632 2.1951054594016e-06 hm5C_site_48465 DeepMRMD:0.59331632;iRNA_m5C:2.1951054594016e-06 Alzheimer's disease (late onset) 48466 chr11 64064453 64064453 1 + G T COAD 64064450 + 64064430 64064470 41 GGGCAGCGCCTTCTTTTTCTCAGGGACCATCATCACCACCA GGGCAGCGCCTTCTTTTTCTCAGTGACCATCATCACCACCA < 41bp 0.878618588242383 0.568127044069887 0.9331744 0.30004722 prediction 0.620983088344992 Functional Loss - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64064450 chr11:64064453 stopgain 0.996 4 24 hm5C_associated_SNPs_53114 0 0 0 0 1 exosome 0.500231643921092 0.500231643921102 0.8663488 0 hm5C_site_48466 DeepMRMD:0.8663488;iRNA_m5C:0 48467 chr10 69957180 69957180 1 + A C LUAD 69957176 + 69957156 69957196 41 GCTTTTTCCGACCACATTTCCTGCAGGCTCCTGGGGATATG GCTTTTTCCGACCACATTTCCTGCCGGCTCCTGGGGATATG < 41bp 0.810490567224891 0.402792314655864 0.3107758 0.13993827 prediction 0.620981134449781 Functional Loss - MYPN ENSG00000138347 CDS Human protein_coding chr10:69957176 chr10:69957180 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_53115 0 0 0 0 2 Cytosol 0.500231644532342 0.500231644103748 0 8.57188098279948e-10 hm5C_site_48467 DeepMRMD:0;iRNA_m5C:8.57188098279948e-10 48468 chr1 38023246 38023246 1 + G T UCEC 38023244 + 38023224 38023264 41 CCCCCAGCAGCCTGGACCTTCAGGTTCAGCCCCACAGCCAC CCCCCAGCAGCCTGGACCTTCATGTTCAGCCCCACAGCCAC < 41bp 0.810473390366846 0.469151397345599 0.8892523 0.23534235 prediction 0.620946780733692 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38023244 chr1:38023246 nonsynonymous SNV 0.808 3 23 hm5C_associated_SNPs_53116 0 0 0 0 1 Cytosol 0.500231643921093 0.500231643995698 0.7785046 0 hm5C_site_48468 DeepMRMD:0.7785046;iRNA_m5C:0 48469 chr3 132075603 132075603 1 + A C SARC 132075599 + 132075579 132075619 41 TATCCCCTCATGCTACCTGGCTGCAGCCCCAGCTGTCCTCT TATCCCCTCATGCTACCTGGCTGCCGCCCCAGCTGTCCTCT < 41bp 0.810469254506221 0.413868030155963 0.06319031 0.046201557 prediction 0.620938509012442 Functional Loss - ACPP ENSG00000014257 CDS Human protein_coding chr3:132075599 chr3:132075603 nonsynonymous SNV 0.489 1 25 hm5C_associated_SNPs_53117 0 0 0 0 2 Endoplasmic reticulum 0.500231643921056 0.50023164395808 0 0 hm5C_site_48469 DeepMRMD:0;iRNA_m5C:0 48470 chr11 15134050 15134050 1 + G T PAAD 15134048 + 15134028 15134068 41 CCTGGCAATGGAGAGGCGGCCAGCGAAGGTCCAGGTGGCTG CCTGGCAATGGAGAGGCGGCCATCGAAGGTCCAGGTGGCTG < 41bp 0.836069655977818 0.525608721071661 0.57078254 0.43444043 prediction 0.620921869812314 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15134048 chr11:15134050 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_53118 0 0 0 0 1 exosome 0.50023164391795 0.500231643895359 0.14156508 4.51816362101454e-11 hm5C_site_48470 DeepMRMD:0.14156508;iRNA_m5C:4.51816362101454e-11 48471 chr17 61557711 61557711 1 + G T PRAD 61557708 + 61557688 61557728 41 ACGCCCCCAGGCTTCACAGACACGGGGGCCTACTGGCGCTC ACGCCCCCAGGCTTCACAGACACTGGGGCCTACTGGCGCTC < 41bp 0.810431589589818 0.44163308667294 0.883348 0.36002332 prediction 0.620863179179636 Functional Loss - ACE ENSG00000159640 CDS Human protein_coding chr17:61557708 chr17:61557711 synonymous SNV . 0 24 hm5C_associated_SNPs_53119 0 0 0 0 1 cytosol 0.500231643920283 0.50023164392128 0.766696 0 hm5C_site_48471 DeepMRMD:0.766696;iRNA_m5C:0 Facial morphology (factor 14, intercanthal width) 48472 chr6 133783539 133783539 1 + G T LUSC 133783537 + 133783517 133783557 41 CTGCCTATGCAGGCCAGACTCAGTATTCGGGGATGCAGCAG CTGCCTATGCAGGCCAGACTCATTATTCGGGGATGCAGCAG < 41bp 0.814738009597015 0.504307080943678 0.14601845 0.04080844 prediction 0.620861857306674 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783537 chr6:133783539 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53120 0 0 0 0 2 Cytosol 0.500231619589027 0.500231643953314 0 0 hm5C_site_48472 DeepMRMD:0;iRNA_m5C:0 48473 chr19 38899416 38899416 1 + G T HNSC 38899414 + 38899394 38899434 41 CTTATGGGCAACGTTCCAGACCGGGGGGGCCGCCCAAATGA CTTATGGGCAACGTTCCAGACCTGGGGGGCCGCCCAAATGA < 41bp 0.820528432751283 0.510102516241067 0.81898916 0.24394634 prediction 0.620851833020433 Functional Loss - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38899414 chr19:38899416 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_53121 0 0 1 0 1 Cytosol 0.500231643929849 0.500231647494499 0.63797832 0 hm5C_site_48473 DeepMRMD:0.63797832;iRNA_m5C:0 48474 chr12 98988083 98988083 1 + G T rs559685708 98988080 + 98988060 98988100 41 TCGGCCTTTTCCACCATAGGCGGGTGTCAGATCCTTGGCCT TCGGCCTTTTCCACCATAGGCGGTTGTCAGATCCTTGGCCT < 41bp 0.833536025213173 0.523124104832428 0.93027484 0.6628797 prediction 0.62082384076149 Functional Loss - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98988080 chr12:98988083 synonymous SNV . 0 24 hm5C_associated_SNPs_53122 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921093 0.53479028 2.22044604925031e-16 hm5C_site_48474 DeepMRMD:0.53479028;iRNA_m5C:2.22044604925031e-16 48475 chr14 50088412 50088412 1 + G T UCEC 50088410 + 50088390 50088430 41 TGGACTCACTTCGAAAAGCCCAGGGAATTGACAACGTCCTC TGGACTCACTTCGAAAAGCCCATGGAATTGACAACGTCCTC < 41bp 0.814367806105441 0.503958895008355 0.5526072 0.15993959 prediction 0.620817822194172 Functional Loss - MGAT2 ENSG00000168282 CDS Human protein_coding chr14:50088410 chr14:50088412 nonsynonymous SNV 0.988 3 23 hm5C_associated_SNPs_53123 0 0 1 0 0 Endoplasmic reticulum 0.500231643956108 0.500231606185808 0.1052144 7.55405993313474e-08 hm5C_site_48475 DeepMRMD:0.1052144;iRNA_m5C:7.55405993313474e-08 48476 chr1 37948726 37948726 1 + G T STAD 37948723 + 37948703 37948743 41 GTCTCCCAGGATTGCCTGGACTCGGGCATTGGCTCCCTGGA GTCTCCCAGGATTGCCTGGACTCTGGCATTGGCTCCCTGGA < 41bp 0.810404966798792 0.433196965847074 0.5340352 0.35081315 prediction 0.620809933597585 Functional Loss - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948723 chr1:37948726 synonymous SNV . 0 24 hm5C_associated_SNPs_53124 0 0 0 0 0 Nucleus 0.500226821786396 0.500234265678684 0.0680704000000001 0 hm5C_site_48476 DeepMRMD:0.0680704000000001;iRNA_m5C:0 48477 chr15 64710845 64710845 1 + G T UCEC 64710842 + 64710822 64710862 41 ACCAGTTGCGAATCCAGGATCAAGAATTTCAGGAAGGCTTT ACCAGTTGCGAATCCAGGATCAATAATTTCAGGAAGGCTTT < 41bp 0.810394942138809 0.440920900664297 0.29503524 0.15862933 prediction 0.620789884277617 Functional Loss - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64710842 chr15:64710845 stopgain 1.000 1 24 hm5C_associated_SNPs_53125 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921052 0 8.08242361927114e-14 hm5C_site_48477 DeepMRMD:0;iRNA_m5C:8.08242361927114e-14 48478 chr15 73575342 73575342 1 + G T LUAD 73575340 + 73575320 73575360 41 ATGGGAGCCCCACCTCTCCTCTGGACAGTAATATGCTGCTG ATGGGAGCCCCACCTCTCCTCTTGACAGTAATATGCTGCTG < 41bp 0.813799509046584 0.503407897357645 0.39524764 0.10141131 prediction 0.620783223377878 Functional Loss - NEO1 ENSG00000067141 CDS Human protein_coding chr15:73575340 chr15:73575342 synonymous SNV . 0 23 hm5C_associated_SNPs_53126 0 0 1 0 1 Ribosome 0.500231643921135 0.500231643921093 0 8.57092175010621e-14 hm5C_site_48478 DeepMRMD:0;iRNA_m5C:8.57092175010621e-14 48479 chr1 181058374 181058374 1 + G T LUAD 181058372 + 181058352 181058392 41 CCTCCGTCTCAGACGCGCCGCGGGTAGGGGACGAGGTGCCG CCTCCGTCTCAGACGCGCCGCGTGTAGGGGACGAGGTGCCG < 41bp 0.815343357835111 0.504952288764792 0.42651835 0.1645445 prediction 0.620782138140638 Functional Loss - IER5 ENSG00000162783 CDS Human protein_coding chr1:181058372 chr1:181058374 synonymous SNV . 0 23 hm5C_associated_SNPs_53127 0 0 1 0 0 chromatin 0.500231643921476 0.500231643921962 0 0 hm5C_site_48479 DeepMRMD:0;iRNA_m5C:0 48480 chr19 19638159 19638159 1 + G T LUAD 19638156 + 19638136 19638176 41 CTGTTACAGGCAGAAACCGACCGGAGGTAGCACCGCAGGGG CTGTTACAGGCAGAAACCGACCGTAGGTAGCACCGCAGGGG < 41bp 0.810378320646868 0.437006500197742 0.5795866 0.1849541 prediction 0.620756641293737 Functional Loss - NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19638156 chr19:19638159 synonymous SNV . 0 24 hm5C_associated_SNPs_53128 0 0 1 0 2 Endoplasmic reticulum 0.500231643913727 0.500231961754788 0.1591732 0 hm5C_site_48480 DeepMRMD:0.1591732;iRNA_m5C:0 48481 chr19 19638158 19638158 1 + G T LUAD 19638156 + 19638136 19638176 41 CTGTTACAGGCAGAAACCGACCGGAGGTAGCACCGCAGGGG CTGTTACAGGCAGAAACCGACCTGAGGTAGCACCGCAGGGG < 41bp 0.810378320646868 0.482338045492571 0.5795866 0.36132556 prediction 0.620756641293737 Functional Loss - NDUFA13 ENSG00000186010;ENSG00000250067;ENSG00000258674 CDS Human other chr19:19638156 chr19:19638158 nonsynonymous SNV 0.900 4 23 hm5C_associated_SNPs_53129 0 0 1 0 2 Endoplasmic reticulum 0.500231643913727 0.500231643921092 0.1591732 0 hm5C_site_48481 DeepMRMD:0.1591732;iRNA_m5C:0 48482 chr11 111959707 111959707 1 + G T SARC 111959704 + 111959684 111959724 41 GCTCTGCGATGGACTATTCCCTGGCTGCAGCCCTCACTCTT GCTCTGCGATGGACTATTCCCTGTCTGCAGCCCTCACTCTT < 41bp 0.868933114500592 0.558555342805764 0.20924363 0.106487125 prediction 0.620755543389655 Functional Loss - SDHD ENSG00000204370;ENSG00000255292 CDS Human other chr11:111959704 chr11:111959707 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_53130 0 0 1 0 0 Ribosome 0.500231644746588 0.500231643932166 0 1.62884394860896e-09 hm5C_site_48482 DeepMRMD:0;iRNA_m5C:1.62884394860896e-09 48483 chr14 38679119 38679119 1 + G T UCEC 38679116 + 38679096 38679136 41 TACCGCCGGCCCACCGTGGCCAAGGTAGTAAACCTGGGCGT TACCGCCGGCCCACCGTGGCCAATGTAGTAAACCTGGGCGT < 41bp 0.887855884985505 0.577484748740164 0.8913798 0.47534057 prediction 0.620742272490681 Functional Loss - SSTR1 ENSG00000139874 CDS Human protein_coding chr14:38679116 chr14:38679119 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_53131 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0.7827596 0 hm5C_site_48483 DeepMRMD:0.7827596;iRNA_m5C:0 48484 chr22 39069209 39069209 1 + G T SARC 39069206 + 39069186 39069226 41 CCCACTTAATGGAGAAGGAACTGGATGAACTGAGGATCAGC CCCACTTAATGGAGAAGGAACTGTATGAACTGAGGATCAGC < 41bp 0.810354630747466 0.463446722041134 0.4447271 0.23961166 prediction 0.620709261494932 Functional Loss - CBY1 ENSG00000100211 CDS Human protein_coding chr22:39069206 chr22:39069209 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_53132 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48484 DeepMRMD:0;iRNA_m5C:0 48485 chr19 41726600 41726600 1 + G T UCEC 41726597 + 41726577 41726617 41 CAGGGAATATCACAGGTGCCCGGGGACTCACGGGCACCCTT CAGGGAATATCACAGGTGCCCGGTGACTCACGGGCACCCTT < 41bp 0.810352360126446 0.422381768962527 0.9275017 0.9060923 prediction 0.620704720252893 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41726597 chr19:41726600 stopgain 0.962 1 24 hm5C_associated_SNPs_53133 0 0 0 0 1 Nucleus 0.500231643918244 0.500231643921092 0.0428188 0 hm5C_site_48485 DeepMRMD:0.0428188;iRNA_m5C:0 48486 chr17 35745633 35745633 1 + G T UCEC 35745631 + 35745611 35745651 41 ATGAGAACCTAGAGAAGAGACAGAAATGGAGTATTGTGGTC ATGAGAACCTAGAGAAGAGACATAAATGGAGTATTGTGGTC < 41bp 0.815293726841357 0.504952085754211 0.13969916 0.23644525 prediction 0.620683282174292 Functional Loss - C17orf78 ENSG00000167230 CDS Human other chr17:35745631 chr17:35745633 nonsynonymous SNV 0.988 0 23 hm5C_associated_SNPs_53134 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_48486 DeepMRMD:0;iRNA_m5C:0 48487 chr1 206651108 206651108 1 + G T UCEC 206651106 + 206651086 206651126 41 CCGCAGGTACCGGATCACCACGGAGAAGCCGGCTGGGGCCA CCGCAGGTACCGGATCACCACGTAGAAGCCGGCTGGGGCCA < 41bp 0.810340160668564 0.472525433793324 0.90448 0.5506736 prediction 0.620680321337128 Functional Loss - IKBKE ENSG00000143466 CDS Human other chr1:206651106 chr1:206651108 stopgain 0.195 1 23 hm5C_associated_SNPs_53135 0 0 0 0 2 Cytosol 0.50023164424302 0.500236300020941 0.7076128 0 hm5C_site_48487 DeepMRMD:0.7076128;iRNA_m5C:0 48488 chr17 80320175 80320175 1 + A C rs116114329 80320171 + 80320151 80320191 41 TTCTAGACTTTAAAGACTTGCTGGAGTCAGAGGACTGGGAA TTCTAGACTTTAAAGACTTGCTGGCGTCAGAGGACTGGGAA < 41bp 0.810327792952079 0.442264524717148 0.086422384 0.07684448 prediction 0.620655585904158 Functional Loss - TEX19 ENSG00000182459 CDS Human protein_coding chr17:80320171 chr17:80320175 nonsynonymous SNV 0.140 3 25 hm5C_associated_SNPs_53136 0 0 0 0 0 exosome 0.500231643921129 0.500231656156818 0 0 hm5C_site_48488 DeepMRMD:0;iRNA_m5C:0 48489 chr4 88534140 88534140 1 + G T rs61738508 88534138 + 88534118 88534158 41 TGATGATGAAGATGAAGAAGCAGGGAATGGAAAAGACAGTA TGATGATGAAGATGAAGAAGCATGGAATGGAAAAGACAGTA < 41bp 0.840031210721386 0.529712106383322 0.4780537 0.13679698 prediction 0.620638208676128 Functional Loss - DSPP ENSG00000152591 CDS Human protein_coding chr4:88534138 chr4:88534140 nonsynonymous SNV 0.055 3 23 hm5C_associated_SNPs_53137 0 0 0 0 0 exosome 0.500231643921092 0.500231641814712 0 4.21275836437474e-09 hm5C_site_48489 DeepMRMD:0;iRNA_m5C:4.21275836437474e-09 48490 chr2 133175214 133175214 1 + A C COAD 133175210 + 133175190 133175230 41 ACCGCTCCAGCACCCGCCACCACGAGCAGCCCGAGACCTCC ACCGCTCCAGCACCCGCCACCACGCGCAGCCCGAGACCTCC < 41bp 0.810309262578373 0.425947693844735 0.030747741 0.027777612 prediction 0.620618525156746 Functional Loss - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133175210 chr2:133175214 nonsynonymous SNV 0.913 0 25 hm5C_associated_SNPs_53138 0 0 0 0 0 nucleus 0.500231643921095 0.500231643991494 0 0 hm5C_site_48490 DeepMRMD:0;iRNA_m5C:0 48491 chr10 105139503 105139503 1 + G T CESC 105139500 + 105139480 105139520 41 TTGGATCCAAAAGCAAAAAACAAGATCCCAATGCTCCACCT TTGGATCCAAAAGCAAAAAACAATATCCCAATGCTCCACCT < 41bp 0.810305869035765 0.450098941881615 0.5544852 0.32694983 prediction 0.62061173807153 Functional Loss - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105139500 chr10:105139503 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53139 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0.1089704 0 hm5C_site_48491 DeepMRMD:0.1089704;iRNA_m5C:0 48492 chr7 142983817 142983817 1 + A C rs566240291 142983813 + 142983793 142983833 41 TCCTGATCTGCAGAGCTTGGCGGCAGTCCCCACATTAGAGC TCCTGATCTGCAGAGCTTGGCGGCCGTCCCCACATTAGAGC < 41bp 0.880629877942654 0.570338365177206 0.29409784 0.3371668 prediction 0.620583025530896 Functional Loss - TMEM139 ENSG00000178826 CDS Human protein_coding chr7:142983813 chr7:142983817 synonymous SNV . 0 25 hm5C_associated_SNPs_53140 0 0 0 2 0 Ribosome 0.500231667484253 0.50023164391687 0 4.71347649799725e-08 hm5C_site_48492 DeepMRMD:0;iRNA_m5C:4.71347649799725e-08 48493 chr19 8430860 8430860 1 + G T UCEC 8430858 + 8430838 8430878 41 ACACAACTCAAGGCTCAGAACAGCAGGATCCAGCAACTCTT ACACAACTCAAGGCTCAGAACATCAGGATCCAGCAACTCTT < 41bp 0.832080591620753 0.521822489391711 0.25999367 0.13279241 prediction 0.620516204458083 Functional Loss - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8430858 chr19:8430860 nonsynonymous SNV 0.984 2 23 hm5C_associated_SNPs_53141 0 0 1 0 2 Cytosol 0.500208484118748 0.500207176928318 0 2.61438085957799e-06 hm5C_site_48493 DeepMRMD:0;iRNA_m5C:2.61438085957799e-06 48494 chr22 32889166 32889166 1 + G T BRCA 32889163 + 32889143 32889183 41 AACTACGGATCTTCCGACTTCTGGATGTTCGTTCCGTCTTG AACTACGGATCTTCCGACTTCTGTATGTTCGTTCCGTCTTG < 41bp 0.859450606100722 0.54919678464038 0.6522944 0.2365945 prediction 0.620507642920683 Functional Loss - FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32889163 chr22:32889166 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53142 0 0 1 0 1 chromatin 0.500231642553616 0.500231643921092 0.3045888 0 hm5C_site_48494 DeepMRMD:0.3045888;iRNA_m5C:0 48495 chr17 8157565 8157565 1 + G T THCA 8157562 + 8157542 8157582 41 CTTACTGCTGGATGATGTTGCTCGGGAGTCCTGGCTCCTTC CTTACTGCTGGATGATGTTGCTCTGGAGTCCTGGCTCCTTC < 41bp 0.810252937464036 0.436888052959387 0.29787415 0.43528372 prediction 0.620505874928071 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8157562 chr17:8157565 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_53143 0 0 1 0 2 Nucleus 0.500231643905458 0.500231642047775 0 3.715366458934e-09 hm5C_site_48495 DeepMRMD:0;iRNA_m5C:3.715366458934e-09 48496 chr8 27310642 27310642 1 + G T UCEC 27310640 + 27310620 27310660 41 TTTTATTGCAGTGGAGTTCACAGGGCCCCCACAGAAGCCCC TTTTATTGCAGTGGAGTTCACATGGCCCCCACAGAAGCCCC < 41bp 0.810251066716643 0.470123631955105 0.90085375 0.3234614 prediction 0.620502133433286 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27310640 chr8:27310642 nonsynonymous SNV 0.880 3 23 hm5C_associated_SNPs_53144 0 0 1 0 2 chromatin 0.500231643921092 0.500231643921092 0.8017075 0 hm5C_site_48496 DeepMRMD:0.8017075;iRNA_m5C:0 48497 chr1 248512808 248512808 1 + G T LUAD 248512806 + 248512786 248512826 41 CCACCTGCATCCCTCACATCCTGGTGGTGTCAGTCTTCCTC CCACCTGCATCCCTCACATCCTTGTGGTGTCAGTCTTCCTC < 41bp 0.812752300820964 0.502501726532198 0.30140734 0.15853631 prediction 0.620501148577533 Functional Loss - OR14C36 ENSG00000177174 CDS Human protein_coding chr1:248512806 chr1:248512808 synonymous SNV . 0 23 hm5C_associated_SNPs_53145 0 0 0 0 0 unknown 0.500231643919713 0.500231643921092 0 0 hm5C_site_48497 DeepMRMD:0;iRNA_m5C:0 48498 chr20 55206502 55206502 1 + G T BRCA 55206499 + 55206479 55206519 41 CCTGCACCAGCCGGCGCCCACAGGCAGCCAGCAGCAGGCCT CCTGCACCAGCCGGCGCCCACAGTCAGCCAGCAGCAGGCCT < 41bp 0.880446524521755 0.570203076895656 0.8307475 0.1970543 prediction 0.620486895252197 Functional Loss - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55206499 chr20:55206502 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_53146 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.661495 0 hm5C_site_48498 DeepMRMD:0.661495;iRNA_m5C:0 48499 chr11 128781513 128781513 1 + G T PRAD 128781511 + 128781491 128781531 41 GGTGGCTCATTGCTTATATCCGGGGTGACCTGGACCATGTT GGTGGCTCATTGCTTATATCCGTGGTGACCTGGACCATGTT < 41bp 0.83250369217146 0.522287005957548 0.9523132 0.71498615 prediction 0.620433372427824 Functional Loss - KCNJ5 ENSG00000120457 CDS Human protein_coding chr11:128781511 chr11:128781513 synonymous SNV . 0 23 hm5C_associated_SNPs_53147 0 0 0 0 0 Ribosome 0.500231651292205 0.500231643922792 0.4746541 1.4738824383187e-08 hm5C_site_48499 DeepMRMD:0.4746541;iRNA_m5C:1.4738824383187e-08 48500 chr16 28841204 28841204 1 + G T GBM 28841202 + 28841182 28841222 41 GCCCTTAGAAAAGGACAACTCAGAAGAGTTTCGTCAGCGAG GCCCTTAGAAAAGGACAACTCATAAGAGTTTCGTCAGCGAG < 41bp 0.817760586621926 0.507566523534933 0.31482148 0.07548076 prediction 0.620388126173986 Functional Loss - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28841202 chr16:28841204 stopgain 0.996 1 23 hm5C_associated_SNPs_53148 0 0 1 0 1 Cytosol 0.500231644995453 0.500231643921094 0 2.14871853643217e-09 hm5C_site_48500 DeepMRMD:0;iRNA_m5C:2.14871853643217e-09 48501 chr1 92443743 92443743 1 + G T UCEC 92443740 + 92443720 92443760 41 TTTAGGAGAAAATGGATAACCAAGAATATAAGGATGCATAC TTTAGGAGAAAATGGATAACCAATAATATAAGGATGCATAC < 41bp 0.810191749342133 0.479275171606958 0.24680915 0.21985853 prediction 0.620383498684267 Functional Loss - BRDT ENSG00000137948 CDS Human protein_coding chr1:92443740 chr1:92443743 stopgain 0.998 0 24 hm5C_associated_SNPs_53149 0 0 0 0 1 exosome 0.500231662461448 0.500231643920982 0 3.70809316585508e-08 hm5C_site_48501 DeepMRMD:0;iRNA_m5C:3.70809316585508e-08 48502 chr2 231174651 231174651 1 + G T LUSC 231174648 + 231174628 231174668 41 TTATCTTCTAGATGAGAAACCTGGATGAGTGTGAGGTGTGC TTATCTTCTAGATGAGAAACCTGTATGAGTGTGAGGTGTGC < 41bp 0.810180954665879 0.450073757605006 0.34896088 0.15184805 prediction 0.620361909331758 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231174648 chr2:231174651 nonsynonymous SNV 0.024 3 24 hm5C_associated_SNPs_53150 0 0 0 1 1 exosome 0.500224529553259 0.50019935300621 0 5.03530940976216e-05 hm5C_site_48502 DeepMRMD:0;iRNA_m5C:5.03530940976216e-05 48503 chr14 55817874 55817874 1 + G T UCEC 55817872 + 55817852 55817892 41 GTCTGAGTCCTATTCTGCCCCAGGAGCTTGTGAAGAACCCA GTCTGAGTCCTATTCTGCCCCATGAGCTTGTGAAGAACCCA < 41bp 0.813568025070082 0.503389340570157 0.3147606 0.022761315 prediction 0.62035736899985 Functional Loss - FBXO34 ENSG00000178974 CDS Human protein_coding chr14:55817872 chr14:55817874 stopgain 0.935 0 23 hm5C_associated_SNPs_53151 0 0 0 0 0 Nucleus 0.500231643215667 0.500231615193348 0 5.60446380415414e-08 hm5C_site_48503 DeepMRMD:0;iRNA_m5C:5.60446380415414e-08 48504 chr17 25746826 25746826 1 + G T LUAD 25746824 + 25746804 25746844 41 AGCTGGGCTGCCAGCAGACACGGGGCCTAAAGCCTGTTGGA AGCTGGGCTGCCAGCAGACACGTGGCCTAAAGCCTGTTGGA < 41bp 0.810168902804652 0.491497289789521 0.91700304 0.64976346 prediction 0.620337805609305 Functional Loss - TBC1D3P5 ENSG00000266433 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:25746824 chr17:25746826 . . 0 23 hm5C_associated_SNPs_53152 0 0 0 0 2 unknown 0.500231643921092 0.500231643921024 0.53447916 1.36335387423969e-13 hm5C_site_48504 DeepMRMD:0.53447916;iRNA_m5C:1.36335387423969e-13 48505 chr10 101507079 101507079 1 + G T LUAD 101507076 + 101507056 101507096 41 TCTTAACCTTGGGATTTGAACGCGTGTTGACCAGTGGATGT TCTTAACCTTGGGATTTGAACGCTTGTTGACCAGTGGATGT < 41bp 0.875417404682171 0.56524942230442 0.7094073 0.2902228 prediction 0.620335964755503 Functional Loss - CUTC ENSG00000119929 CDS Human protein_coding chr10:101507076 chr10:101507079 nonsynonymous SNV 0.689 1 24 hm5C_associated_SNPs_53153 0 0 1 1 2 Ribosome 0.500231643986837 0.5002316594972 0.4188146 0 hm5C_site_48505 DeepMRMD:0.4188146;iRNA_m5C:0 48506 chr11 124006972 124006972 1 + G T rs2276054 124006970 + 124006950 124006990 41 TTTAGGGGTCAGAGATTAATCAGCTATGCCCAGCTGACCGG TTTAGGGGTCAGAGATTAATCATCTATGCCCAGCTGACCGG < 41bp 0.826892841230546 0.516726764919593 0.40843886 0.22982699 prediction 0.620332152621907 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124006970 chr11:124006972 nonsynonymous SNV 0.932 0 23 hm5C_associated_SNPs_53154 0 0 0 0 1 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_48506 DeepMRMD:0;iRNA_m5C:0 48507 chr16 50109559 50109559 1 + G T MESO 50109556 + 50109536 50109576 41 GTGCTACAGCATTGAACATGCTGGAATCAGCACTGCTTTCT GTGCTACAGCATTGAACATGCTGTAATCAGCACTGCTTTCT < 41bp 0.871297646627354 0.561132307027358 0.273225 0.06854424 prediction 0.620330679199993 Functional Loss - HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50109556 chr16:50109559 stopgain 0.288 1 24 hm5C_associated_SNPs_53155 0 0 1 0 2 Ribosome 0.500268474222615 0.500941037429056 0 0 hm5C_site_48507 DeepMRMD:0;iRNA_m5C:0 48508 chr10 135163665 135163665 1 + G T COAD 135163662 + 135163642 135163682 41 GCAGGTGCAGTCCCAGCACCCAAGGTAGGTGTGAGCCCCTC GCAGGTGCAGTCCCAGCACCCAATGTAGGTGTGAGCCCCTC < 41bp 0.881141714236136 0.570989736648176 0.89816904 0.39718342 prediction 0.620303955175921 Functional Loss - PRAP1 ENSG00000165828;ENSG00000198546 CDS Human other chr10:135163662 chr10:135163665 nonsynonymous SNV 0.302 1 24 hm5C_associated_SNPs_53156 0 0 0 0 1 chromatin 0.500231643905046 0.500231643921221 0.79633808 0 hm5C_site_48508 DeepMRMD:0.79633808;iRNA_m5C:0 48509 chr1 160340795 160340795 1 + A T HNSC 160340791 + 160340771 160340811 41 GAACGCATCCGCGTGGAAGCCTTCAACCTGGCCTTCGCCGA GAACGCATCCGCGTGGAAGCCTTCTACCTGGCCTTCGCCGA < 41bp 0.810143160412737 0.498862948874425 0.4331062 0.14997202 prediction 0.620286320825475 Functional Loss - NHLH1 ENSG00000171786 CDS Human protein_coding chr1:160340791 chr1:160340795 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_53157 0 0 0 0 0 Cytosol 0.500231202709247 0.500231642701043 0 0 hm5C_site_48509 DeepMRMD:0;iRNA_m5C:0 48510 chr2 47184044 47184044 1 + G T GBM 47184041 + 47184021 47184061 41 ATTACGTGGAGGGCTCATACCGAGATGCCATCAGCATGTAC ATTACGTGGAGGGCTCATACCGATATGCCATCAGCATGTAC < 41bp 0.870548003287602 0.560408057454912 0.85207605 0.10709748 prediction 0.62027989166538 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47184041 chr2:47184044 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_53158 0 0 0 0 1 Nucleus 0.500232063058018 0.500459069908873 0.7041521 0 hm5C_site_48510 DeepMRMD:0.7041521;iRNA_m5C:0 48511 chr6 110538977 110538977 1 + G T UCEC 110538975 + 110538955 110538995 41 TTCCTCAGTGCAGCCTATGACAGGTATCTTAAGCTCTGGGA TTCCTCAGTGCAGCCTATGACATGTATCTTAAGCTCTGGGA < 41bp 0.810128489991841 0.491679760671708 0.64254856 0.28762114 prediction 0.620256979983682 Functional Loss - CDC40 ENSG00000168438 CDS Human protein_coding chr6:110538975 chr6:110538977 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_53159 0 0 1 0 2 chromatin 0.500231643921092 0.500231643919917 0.28509712 2.35123032155116e-12 hm5C_site_48511 DeepMRMD:0.28509712;iRNA_m5C:2.35123032155116e-12 48512 chr13 42535406 42535406 1 + A C rs112282427 42535402 + 42535382 42535422 41 CGGCACCGTCCCGGGACTGCCCGCACCGCGGGGGTGCTCCG CGGCACCGTCCCGGGACTGCCCGCCCCGCGGGGGTGCTCCG < 41bp 0.858692899958788 0.548566736437452 0.2504343 0.20099649 prediction 0.620252327042672 Functional Loss - VWA8-AS1 ENSG00000102763 upstream Human protein_coding chr13:42535402 chr13:42535406 . . 0 25 hm5C_associated_SNPs_53160 0 0 0 0 0 unknown 0.50023167752338 0.500231643928765 0 6.71892308456989e-08 hm5C_site_48512 DeepMRMD:0;iRNA_m5C:6.71892308456989e-08 48513 chr4 90816505 90816505 1 + G T LIHC 90816502 + 90816482 90816522 41 CGCTAGCATCAAGTTCAATCCTGGAGCAGAATCAGTGGTCC CGCTAGCATCAAGTTCAATCCTGTAGCAGAATCAGTGGTCC < 41bp 0.86639035291945 0.55626543775788 0.14827198 0.047041833 prediction 0.62024983032314 Functional Loss - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90816502 chr4:90816505 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_53161 0 0 0 0 1 cytosol 0.500228017226548 0.50023159805023 0 0 hm5C_site_48513 DeepMRMD:0;iRNA_m5C:0 Systolic blood pressure 48514 chr9 125281478 125281478 1 + G T SKCM 125281476 + 125281456 125281496 41 CTCCTCCTGGACCTCCCCATCTGGCCAGAGCAGCAGGCTGT CTCCTCCTGGACCTCCCCATCTTGCCAGAGCAGCAGGCTGT < 41bp 0.811798597961081 0.50167905341512 0.31860918 0.12918189 prediction 0.620239089091923 Functional Loss - OR1J4 ENSG00000239590 CDS Human protein_coding chr9:125281476 chr9:125281478 nonsynonymous SNV 0.015 0 23 hm5C_associated_SNPs_53162 0 0 0 0 0 exosome 0.50023088516239 0.500231608365478 0 0 hm5C_site_48514 DeepMRMD:0;iRNA_m5C:0 48515 chr16 31309150 31309150 1 + G T LUAD 31309147 + 31309127 31309167 41 TTGGGGCAGCCCTAACAGTGCTGGGGGACGTAAATGGGGAC TTGGGGCAGCCCTAACAGTGCTGTGGGACGTAAATGGGGAC < 41bp 0.810114676298936 0.434426777198111 0.77745736 0.37723154 prediction 0.620229352597871 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309147 chr16:31309150 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_53163 0 0 0 0 2 Endoplasmic reticulum 0.500231643921234 0.500231641652766 0.55491472 4.5369352719149e-09 hm5C_site_48515 DeepMRMD:0.55491472;iRNA_m5C:4.5369352719149e-09 48516 chr11 709421 709421 1 + G T LIHC 709419 + 709399 709439 41 CAAGACACCATGAGCCAGTCCGGGGCCGTGAGCTGCTGCCC CAAGACACCATGAGCCAGTCCGTGGCCGTGAGCTGCTGCCC < 41bp 0.832294172948285 0.522181840514966 0.9038396 0.11221513 prediction 0.620224664866638 Functional Loss - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:709419 chr11:709421 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_53164 0 0 1 0 1 Cytosol 0.500231643921093 0.50023164601952 0.8076792 0 hm5C_site_48516 DeepMRMD:0.8076792;iRNA_m5C:0 48517 chr3 10960063 10960063 1 + G T SKCM 10960061 + 10960041 10960081 41 CAGCGGCACCAGCTTCGTGGCTGGGTTTGCCATCTTCTCAG CAGCGGCACCAGCTTCGTGGCTTGGTTTGCCATCTTCTCAG < 41bp 0.810098647983813 0.487934659651968 0.23629257 0.020254314 prediction 0.620197295967627 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10960061 chr3:10960063 nonsynonymous SNV 0.920 5 23 hm5C_associated_SNPs_53165 0 0 1 0 2 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_48517 DeepMRMD:0;iRNA_m5C:0 48518 chr3 119530454 119530454 1 + G T LGG 119530452 + 119530432 119530472 41 GCGGAAGAAAAGTGAACGGACAGGGACTCAGCCACTGGGAG GCGGAAGAAAAGTGAACGGACATGGACTCAGCCACTGGGAG < 41bp 0.810098405259811 0.466137026150356 0.8858416 0.26999837 prediction 0.620196810519622 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119530452 chr3:119530454 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_53166 0 0 0 0 1 nucleus 0.500231643921092 0.500231643921093 0.7716832 0 hm5C_site_48518 DeepMRMD:0.7716832;iRNA_m5C:0 48519 chr12 7045918 7045918 1 + G T BRCA 7045916 + 7045896 7045936 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG AGCAGCAGCAGCAGCAGCAGCATCAGCAGCAGCAGCAGCAG < 41bp 0.836146492407763 0.526051013704243 0.32604557 0.05727014 prediction 0.62019095740704 Functional Loss - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7045916 chr12:7045918 nonsynonymous SNV 0.042 0 23 hm5C_associated_SNPs_53167 0 0 0 0 0 Endoplasmic reticulum 0.500231643920759 0.500231642561996 0 2.7175248717981e-09 hm5C_site_48519 DeepMRMD:0;iRNA_m5C:2.7175248717981e-09 48520 chr19 16986880 16986880 1 + G T SARC 16986877 + 16986857 16986897 41 TCCCGCCAGCTGCACCACCTCGTGAGCGATGACGTCTGCCT TCCCGCCAGCTGCACCACCTCGTTAGCGATGACGTCTGCCT < 41bp 0.810089716515224 0.437986279708869 0.87080616 0.3219574 prediction 0.620179433030448 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16986877 chr19:16986880 synonymous SNV . 0 24 hm5C_associated_SNPs_53168 0 0 1 0 1 Cytosol 0.500232211727366 0.500231643928468 0.74161232 1.13559779535422e-06 hm5C_site_48520 DeepMRMD:0.74161232;iRNA_m5C:1.13559779535422e-06 48521 chr12 50367027 50367027 1 + G T rs35872290 50367025 + 50367005 50367045 41 TGCAGGCTTTGGAAAGCCATCAGCAGGGCGCTGTTTGCAGA TGCAGGCTTTGGAAAGCCATCATCAGGGCGCTGTTTGCAGA < 41bp 0.837794366579602 0.527733398896004 0.37715572 0.12273285 prediction 0.620121935367196 Functional Loss - AQP6 ENSG00000086159 CDS Human protein_coding chr12:50367025 chr12:50367027 nonsynonymous SNV 0.673 1 23 hm5C_associated_SNPs_53169 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643920822 0 5.41344746807226e-13 hm5C_site_48521 DeepMRMD:0;iRNA_m5C:5.41344746807226e-13 48522 chr11 6806792 6806792 1 + G T UCEC 6806790 + 6806770 6806810 41 TTCTGCAGGGCCCAGGAGATCAGGCATCTTCTCTGTGAGAT TTCTGCAGGGCCCAGGAGATCATGCATCTTCTCTGTGAGAT < 41bp 0.826209514418991 0.516150973701867 0.55457836 0.056234747 prediction 0.620117081434248 Functional Loss - OR2AG1 ENSG00000170803 CDS Human other chr11:6806790 chr11:6806792 nonsynonymous SNV 0.082 1 23 hm5C_associated_SNPs_53170 0 0 0 0 0 unknown 0.500231643921092 0.50023164394951 0.10915672 0 hm5C_site_48522 DeepMRMD:0.10915672;iRNA_m5C:0 48523 chr12 56631045 56631045 1 + G T LGG 56631043 + 56631023 56631063 41 GCAGTCCTGGGGGTGGGGCTCAGCCTGGGCCCTGTCCCCCT GCAGTCCTGGGGGTGGGGCTCATCCTGGGCCCTGTCCCCCT < 41bp 0.810056531852001 0.483266481903044 0.8374357 0.8070625 prediction 0.620113063704002 Functional Loss - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56631043 chr12:56631045 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_53171 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921092 0.0607464 0 hm5C_site_48523 DeepMRMD:0.0607464;iRNA_m5C:0 48524 chr4 88536980 88536980 1 + A C rs201074114 88536976 + 88536956 88536996 41 AGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAG AGCAGTGACAGCAGTGACAGCAGCCATAGCAGTGACAGCAG < 41bp 0.831734675587636 0.521679921857694 0.14472601 0.25530773 prediction 0.620109507459883 Functional Loss - DSPP ENSG00000152591 CDS Human protein_coding chr4:88536976 chr4:88536980 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_53172 0 0 0 0 0 exosome 0.498555558303151 0.500230051832619 0 0 hm5C_site_48524 DeepMRMD:0;iRNA_m5C:0 48525 chr1 226019628 226019628 1 + A C UCEC 226019624 + 226019604 226019644 41 GGAAGAAGCAGGTGGAGATTCTCAACAGATACCCTCACTTC GGAAGAAGCAGGTGGAGATTCTCACCAGATACCCTCACTTC < 41bp 0.810006523659186 0.388450965728415 0.29588675 0.048832834 prediction 0.620013047318372 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226019624 chr1:226019628 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_53173 0 0 1 0 1 Endoplasmic reticulum 0.500231643921097 0.500231643921092 0 9.76996261670138e-15 hm5C_site_48525 DeepMRMD:0;iRNA_m5C:9.76996261670138e-15 48526 chr19 6848051 6848051 1 + G T LUAD 6848049 + 6848029 6848069 41 GGGCAGGGGCAGAGAGCATCCTGGCCAACCGCTCGGACGGG GGGCAGGGGCAGAGAGCATCCTTGCCAACCGCTCGGACGGG < 41bp 0.810002264951092 0.484974476421053 0.41667554 0.18587273 prediction 0.620004529902185 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6848049 chr19:6848051 synonymous SNV . 0 23 hm5C_associated_SNPs_53174 0 0 0 0 2 Endoplasmic reticulum 0.50023164630881 0.500231643924409 0 4.76880157584958e-09 hm5C_site_48526 DeepMRMD:0;iRNA_m5C:4.76880157584958e-09 48527 chr3 129017247 129017247 1 + G T rs116232537 129017244 + 129017224 129017264 41 CCTGAGAACTGGGAGAAAGTCTGGGACAACTGGAGGCTGCT CCTGAGAACTGGGAGAAAGTCTGTGACAACTGGAGGCTGCT < 41bp 0.888528601359787 0.578530489209417 0.894175 0.14580852 prediction 0.619996224300741 Functional Loss - HMCES ENSG00000183624 CDS Human protein_coding chr3:129017244 chr3:129017247 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53175 0 0 1 0 1 Ribosome 0.500231643921525 0.500231643921088 0.78835 8.74189609589848e-13 hm5C_site_48527 DeepMRMD:0.78835;iRNA_m5C:8.74189609589848e-13 48528 chr16 89789568 89789568 1 + G T LUAD 89789565 + 89789545 89789585 41 GGTCGGTGCCCAGCCCCCAACAGGGGCAGAGGAGGGAGCGT GGTCGGTGCCCAGCCCCCAACAGTGGCAGAGGAGGGAGCGT < 41bp 0.878536621712631 0.568544582132396 0.9163027 0.4141255 prediction 0.61998407916047 Functional Loss - ZNF276 ENSG00000158805 CDS Human protein_coding chr16:89789565 chr16:89789568 nonsynonymous SNV 0.111 0 24 hm5C_associated_SNPs_53176 0 0 1 0 1 Nucleus 0.50023164219793 0.500231643921573 0.8326054 0 hm5C_site_48528 DeepMRMD:0.8326054;iRNA_m5C:0 48529 chr16 67943393 67943393 1 + G T GBM 67943390 + 67943370 67943410 41 TTCGGCCTGGCCAGTGCTCGCAAGAAGGGTGATGACTGCTT TTCGGCCTGGCCAGTGCTCGCAATAAGGGTGATGACTGCTT < 41bp 0.873819366620321 0.563843715625955 0.24268052 0.046976388 prediction 0.619951301988732 Functional Loss - PSKH1 ENSG00000159792 CDS Human protein_coding chr16:67943390 chr16:67943393 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_53177 0 0 1 0 0 Cytosol 0.500231645854035 0.500231643921102 0 3.86586607170614e-09 hm5C_site_48529 DeepMRMD:0;iRNA_m5C:3.86586607170614e-09 48530 chr9 97062949 97062949 1 + G T LUAD 97062946 + 97062926 97062966 41 CCAGCACCAGAGCTCACACACAGGGGAGAGGCCCTTCCTGT CCAGCACCAGAGCTCACACACAGTGGAGAGGCCCTTCCTGT < 41bp 0.889285005471282 0.579314509596132 0.95062184 0.8224156 prediction 0.6199409917503 Functional Loss - ZNF169 ENSG00000175787 CDS Human protein_coding chr9:97062946 chr9:97062949 nonsynonymous SNV 0.005 3 24 hm5C_associated_SNPs_53178 0 0 0 0 0 Cytosol 0.500231643921092 0.500231641652957 0.25641248 4.53627113650157e-09 hm5C_site_48530 DeepMRMD:0.25641248;iRNA_m5C:4.53627113650157e-09 48531 chr10 35897090 35897090 1 + G T BLCA 35897087 + 35897067 35897107 41 TTCTGCTGGGCCTCGCCGACCTGGTCTGCAGCCTGCGGCGG TTCTGCTGGGCCTCGCCGACCTGTTCTGCAGCCTGCGGCGG < 41bp 0.885400913100101 0.575438359884384 0.40727785 0.17041948 prediction 0.619925106431434 Functional Loss - GJD4 ENSG00000177291 CDS Human protein_coding chr10:35897087 chr10:35897090 nonsynonymous SNV 0.013 3 24 hm5C_associated_SNPs_53179 0 0 0 0 0 exosome 0.500231643921676 0.500231643917055 0 9.24171850158473e-12 hm5C_site_48531 DeepMRMD:0;iRNA_m5C:9.24171850158473e-12 48532 chr21 46047456 46047456 1 + A C BRCA 46047452 + 46047432 46047472 41 GTGGGGCTTCTTCGTGCTGCCAACAGTCTAGCTACCAGCCA GTGGGGCTTCTTCGTGCTGCCAACCGTCTAGCTACCAGCCA < 41bp 0.859388548641629 0.549430122557961 0.2020536 0.12138972 prediction 0.619916852167336 Functional Loss - KRTAP10-9 ENSG00000221837 CDS Human protein_coding chr21:46047452 chr21:46047456 nonsynonymous SNV 0.562 0 25 hm5C_associated_SNPs_53180 0 0 0 0 0 unknown 0.500231645571907 0.500231643921092 0 3.30162985839877e-09 hm5C_site_48532 DeepMRMD:0;iRNA_m5C:3.30162985839877e-09 48533 chr12 81111042 81111042 1 + G T LUAD 81111040 + 81111020 81111060 41 GGCCACCACCAGGCTGGTCACTGCCTCATGTGGGCCTGCAA GGCCACCACCAGGCTGGTCACTTCCTCATGTGGGCCTGCAA < 41bp 0.809953947719208 0.491607814337199 0.31587476 0.15060267 prediction 0.619907895438417 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81111040 chr12:81111042 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53181 0 0 0 0 0 unknown 0.500231643924827 0.500231644816865 0 0 hm5C_site_48533 DeepMRMD:0;iRNA_m5C:0 48534 chr10 46999701 46999701 1 + A C LUAD 46999697 + 46999677 46999717 41 GCGAGTCTGGGCTGCAGGCTCAGCATGGGGTGAAGATCCAC GCGAGTCTGGGCTGCAGGCTCAGCCTGGGGTGAAGATCCAC < 41bp 0.890975485948591 0.581021948208668 0.28430268 0.21787089 prediction 0.619907075479845 Functional Loss - GPRIN2 ENSG00000204175 CDS Human protein_coding chr10:46999697 chr10:46999701 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_53182 0 0 0 0 0 exosome 0.500231643921091 0.500231643921092 0 0 hm5C_site_48534 DeepMRMD:0;iRNA_m5C:0 48535 chr1 228333221 228333221 1 + G T LUSC 228333218 + 228333198 228333238 41 CTTCTCACCCCCAGGCATGTCGGGCCCCAGGCCTGTGGTGC CTTCTCACCCCCAGGCATGTCGGTCCCCAGGCCTGTGGTGC < 41bp 0.809941421576834 0.441395002597334 0.8457149 0.44343695 prediction 0.619882843153669 Functional Loss - GUK1 ENSG00000143774 CDS Human protein_coding chr1:228333218 chr1:228333221 nonsynonymous SNV 0.085 1 24 hm5C_associated_SNPs_53183 0 0 1 0 1 Endoplasmic reticulum 0.500231645126064 0.500231644054353 0.6914298 2.14342144033708e-09 hm5C_site_48535 DeepMRMD:0.6914298;iRNA_m5C:2.14342144033708e-09 48536 chr1 33745778 33745778 1 + G T UCEC 33745776 + 33745756 33745796 41 GAGCACTTCTGAGTCAAGCGCGGGCGCGGGCACGGGCACGG GAGCACTTCTGAGTCAAGCGCGTGCGCGGGCACGGGCACGG < 41bp 0.809919055249499 0.482929245175727 0.73158276 0.3213153 prediction 0.619838110498997 Functional Loss - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33745776 chr1:33745778 nonsynonymous SNV 0.282 3 23 hm5C_associated_SNPs_53184 0 0 0 0 1 Nucleus 0.500231643909752 0.500231616406529 0.46316552 5.50064447324417e-08 hm5C_site_48536 DeepMRMD:0.46316552;iRNA_m5C:5.50064447324417e-08 48537 chr3 71804052 71804052 1 + G T UCEC 71804049 + 71804029 71804069 41 AAGACGGAGAAGAGGCTGTGCAAGATGTTCTACGCCGTCAC AAGACGGAGAAGAGGCTGTGCAATATGTTCTACGCCGTCAC < 41bp 0.844565792229503 0.53465464732155 0.30594462 0.2815725 prediction 0.619822289815906 Functional Loss - GPR27 ENSG00000170837 CDS Human protein_coding chr3:71804049 chr3:71804052 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53185 0 0 1 0 0 exosome 0.500230761087247 0.500231646365214 0 0 hm5C_site_48537 DeepMRMD:0;iRNA_m5C:0 48538 chr15 58830623 58830623 1 + G T LUAD 58830621 + 58830601 58830641 41 TGCTCTTTGGAGAAACCAATCAGGGCTGTCAGATTCGAATC TGCTCTTTGGAGAAACCAATCATGGCTGTCAGATTCGAATC < 41bp 0.841896069678885 0.532001547083658 0.8848001 0.20241848 prediction 0.619789045190455 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58830621 chr15:58830623 nonsynonymous SNV 0.278 2 23 hm5C_associated_SNPs_53186 0 0 0 0 2 Endoplasmic reticulum 0.500231643489171 0.500231643889054 0.7696002 0 hm5C_site_48538 DeepMRMD:0.7696002;iRNA_m5C:0 48539 chr1 159779402 159779402 1 + G T LUAD 159779399 + 159779379 159779419 41 AGTGAAGTCAGAACAGGATGCTGGGAACTACTCCTGCGAGG AGTGAAGTCAGAACAGGATGCTGTGAACTACTCCTGCGAGG < 41bp 0.885353122594049 0.575465796772519 0.8510027 0.25075027 prediction 0.619774651643059 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159779399 chr1:159779402 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_53187 0 0 0 0 0 exosome 0.500231574953686 0.500231644230149 0.7020054 0 hm5C_site_48539 DeepMRMD:0.7020054;iRNA_m5C:0 48540 chr11 5776037 5776037 1 + G T LUAD 5776034 + 5776014 5776054 41 TTCTGAATGGAGTCCCAGGACTGGAAGACACACAACTCTGG TTCTGAATGGAGTCCCAGGACTGTAAGACACACAACTCTGG < 41bp 0.809879695077233 0.474122168111442 0.11541924 0.10854769 prediction 0.619759390154467 Functional Loss - OR52N4 ENSG00000181074 CDS Human protein_coding chr11:5776034 chr11:5776037 stopgain 0.259 1 24 hm5C_associated_SNPs_53188 0 0 0 0 0 exosome 0.500231643595542 0.500231643921174 0 0 hm5C_site_48540 DeepMRMD:0;iRNA_m5C:0 48541 chr19 1255693 1255693 1 + G T LUSC 1255691 + 1255671 1255711 41 GATCCGCATGTGCAAGCCCCCGGGTGAGTGGCCACCCTCGG GATCCGCATGTGCAAGCCCCCGTGTGAGTGGCCACCCTCGG < 41bp 0.834754928552459 0.524884021918607 0.9433383 0.42860052 prediction 0.619741813267703 Functional Loss - MIDN ENSG00000167470 CDS Human protein_coding chr19:1255691 chr19:1255693 nonsynonymous SNV 0.845 3 23 hm5C_associated_SNPs_53189 0 0 1 0 1 chromatin 0.50023166295261 0.501053318870217 0.8866766 0 hm5C_site_48541 DeepMRMD:0.8866766;iRNA_m5C:0 48542 chr19 18700263 18700263 1 + G T UCEC 18700260 + 18700240 18700280 41 AGGGCCTGAGAGCCTGGGGGCGCGGCCTCAGGGTCCCCACA AGGGCCTGAGAGCCTGGGGGCGCTGCCTCAGGGTCCCCACA < 41bp 0.809869338563834 0.432935137373609 0.82842386 0.31615156 prediction 0.619738677127668 Functional Loss - C19orf60 ENSG00000006015 CDS Human protein_coding chr19:18700260 chr19:18700263 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_53190 0 0 1 0 1 Ribosome 0.500231643208057 0.500231643978498 0.65684772 0 hm5C_site_48542 DeepMRMD:0.65684772;iRNA_m5C:0 48543 chr7 102575035 102575035 1 + A C COAD 102575031 + 102575011 102575051 41 GGAACAATTGGACCCGAAACCCCAAGTGTCAGGGAGACCCC GGAACAATTGGACCCGAAACCCCACGTGTCAGGGAGACCCC < 41bp 0.809863122435325 0.426413336998859 0.21120483 0.1843757 prediction 0.61972624487065 Functional Loss - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102575031 chr7:102575035 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_53191 0 0 0 0 1 Cytosol 0.500231374900567 0.500230899533487 0 9.50734160509725e-07 hm5C_site_48543 DeepMRMD:0;iRNA_m5C:9.50734160509725e-07 48544 chr3 97887876 97887876 1 + A C UCEC 97887872 + 97887852 97887892 41 CATTGCAATTGGCGTAACCACAGAATGTTTTCTCTTGGCAA CATTGCAATTGGCGTAACCACAGACTGTTTTCTCTTGGCAA < 41bp 0.856803213609691 0.546956617354155 0.27348036 0.30666497 prediction 0.619693192511073 Functional Loss - OR5H15 ENSG00000233412 CDS Human protein_coding chr3:97887872 chr3:97887876 nonsynonymous SNV 0.904 2 25 hm5C_associated_SNPs_53192 0 0 0 0 0 unknown 0.500231645485707 0.500231643904019 0 3.16337755990048e-09 hm5C_site_48544 DeepMRMD:0;iRNA_m5C:3.16337755990048e-09 48545 chr8 104225259 104225259 1 + G T CESC 104225256 + 104225236 104225276 41 GAGACCCAGTGCCCAAATCCCCAGAGCCTCAGCTCAGGCCC GAGACCCAGTGCCCAAATCCCCATAGCCTCAGCTCAGGCCC < 41bp 0.809844185615192 0.443637524314008 0.3114243 0.14166757 prediction 0.619688371230384 Functional Loss - BAALC ENSG00000164929 CDS Human protein_coding chr8:104225256 chr8:104225259 nonsynonymous SNV 0.697 2 24 hm5C_associated_SNPs_53193 0 0 0 0 1 exosome 0.500231643776274 0.500231643918909 0 0 hm5C_site_48545 DeepMRMD:0;iRNA_m5C:0 48546 chr19 55220466 55220466 1 + G T LUAD 55220463 + 55220443 55220483 41 GCCCCATGACCCTCTGGTGCCAGGGGACCCTGGATACCCAG GCCCCATGACCCTCTGGTGCCAGTGGACCCTGGATACCCAG < 41bp 0.828896858995846 0.519055084741419 0.9450173 0.87925625 prediction 0.619683548508853 Functional Loss - LILRP2 ENSG00000170858 ncRNA_exonic Human transcribed_processed_pseudogene chr19:55220463 chr19:55220466 . . 0 24 hm5C_associated_SNPs_53194 0 0 0 0 1 unknown 0.500231643921094 0.50023196760173 0.1315221 0 hm5C_site_48546 DeepMRMD:0.1315221;iRNA_m5C:0 48547 chr1 15970122 15970122 1 + A C UCEC 15970118 + 15970098 15970138 41 TTGCCAAAGGAGTGGGCACCCAGAAGATTATTGGAAGGGTA TTGCCAAAGGAGTGGGCACCCAGACGATTATTGGAAGGGTA < 41bp 0.89060638168317 0.580766197189052 0.73370457 0.6285772 prediction 0.619680368988235 Functional Loss - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15970118 chr1:15970122 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_53195 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921093 0.21025474 0 hm5C_site_48547 DeepMRMD:0.21025474;iRNA_m5C:0 48548 chr17 80708496 80708496 1 + G T UCEC 80708494 + 80708474 80708514 41 CCTTCTTCACCGCCTACCACCGGAAGATCCCCAAGGCTCCG CCTTCTTCACCGCCTACCACCGTAAGATCCCCAAGGCTCCG < 41bp 0.809790893436879 0.489412571239219 0.911868 0.5287577 prediction 0.619581786873758 Functional Loss - FN3K ENSG00000167363 CDS Human protein_coding chr17:80708494 chr17:80708496 synonymous SNV . 0 23 hm5C_associated_SNPs_53196 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0.7662206 0 hm5C_site_48548 DeepMRMD:0.7662206;iRNA_m5C:0 48549 chr11 5906219 5906219 1 + G T UCEC 5906216 + 5906196 5906236 41 CTGTTTTTCGCCTTCCCTCTCAAGATGTCCGACTAAAGGCC CTGTTTTTCGCCTTCCCTCTCAATATGTCCGACTAAAGGCC < 41bp 0.809779270125756 0.449984868165621 0.78879863 0.059697688 prediction 0.619558540251512 Functional Loss - OR52E4 ENSG00000180974 CDS Human protein_coding chr11:5906216 chr11:5906219 nonsynonymous SNV 0.019 3 24 hm5C_associated_SNPs_53197 0 0 0 0 0 unknown 0.500231643921092 0.500231643921101 0.57759726 0 hm5C_site_48549 DeepMRMD:0.57759726;iRNA_m5C:0 48550 chr8 67342116 67342116 1 + G T SKCM 67342113 + 67342093 67342133 41 AAGGTGCCCCGGGGCTCCGGCAAGAAAAGGAAGTTTCAACC AAGGTGCCCCGGGGCTCCGGCAATAAAAGGAAGTTTCAACC < 41bp 0.809772963028389 0.443609658126257 0.7749512 0.3399347 prediction 0.619545926056778 Functional Loss - RRS1 ENSG00000179041 CDS Human protein_coding chr8:67342113 chr8:67342116 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_53198 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.5499024 0 hm5C_site_48550 DeepMRMD:0.5499024;iRNA_m5C:0 48551 chr7 86468824 86468824 1 + G T LUSC 86468822 + 86468802 86468842 41 GCCCTGCTGACCAAGACAAACTGCATTGCCCGCATCTTCGA GCCCTGCTGACCAAGACAAACTTCATTGCCCGCATCTTCGA < 41bp 0.817125985765604 0.507353124452807 0.14889163 0.14093357 prediction 0.619545722625594 Functional Loss - GRM3 ENSG00000198822 CDS Human protein_coding chr7:86468822 chr7:86468824 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53199 0 0 0 0 0 Endoplasmic reticulum 0.500231643742347 0.500231643918139 0 0 hm5C_site_48551 DeepMRMD:0;iRNA_m5C:0 48552 chr12 50492748 50492748 1 + G T UCEC 50492745 + 50492725 50492765 41 CTTAGGTGCAGCAGAGACGACAAGAATTAGAGCAAGCCCTG CTTAGGTGCAGCAGAGACGACAATAATTAGAGCAAGCCCTG < 41bp 0.809766971943073 0.454547333504528 0.7837502 0.86117905 prediction 0.619533943886145 Functional Loss - SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50492745 chr12:50492748 stopgain 1.000 1 24 hm5C_associated_SNPs_53200 0 0 1 0 1 Cytosol 0.500231643921014 0.500231643921092 0 0 hm5C_site_48552 DeepMRMD:0;iRNA_m5C:0 48553 chr11 72945343 72945343 1 + G T LIHC 72945341 + 72945321 72945361 41 CTACGGCGTGGTGTGCGTGCCTGGGCTGTGTCTGAACGCCG CTACGGCGTGGTGTGCGTGCCTTGGCTGTGTCTGAACGCCG < 41bp 0.826205061537244 0.516439212746075 0.24643236 0.04351428 prediction 0.619531697582338 Functional Loss - P2RY2 ENSG00000175591 CDS Human protein_coding chr11:72945341 chr11:72945343 nonsynonymous SNV 0.275 4 23 hm5C_associated_SNPs_53201 0 0 0 0 0 exosome 0.500231645574414 0.500231644568789 0 2.01124916721085e-09 hm5C_site_48553 DeepMRMD:0;iRNA_m5C:2.01124916721085e-09 48554 chrX 30739058 30739058 1 + G T HNSC 30739055 + 30739035 30739075 41 TCGGCGTATGGAGTCTCGAACCCGAGGATTTGTCTGCCGTC TCGGCGTATGGAGTCTCGAACCCTAGGATTTGTCTGCCGTC < 41bp 0.809756830471431 0.448076232745701 0.17148238 0.05930078 prediction 0.619513660942863 Functional Loss - GK ENSG00000198814 CDS Human protein_coding chrX:30739055 chrX:30739058 stopgain 0.896 1 24 hm5C_associated_SNPs_53202 0 0 0 0 1 chromatin 0.500231643920815 0.50023164392159 0 0 hm5C_site_48554 DeepMRMD:0;iRNA_m5C:0 48555 chr7 143748082 143748082 1 + G T LAML 143748080 + 143748060 143748100 41 GTGCTGACACCTGGCTCAACCAGGTGGTCATCTTTGCTGCT GTGCTGACACCTGGCTCAACCATGTGGTCATCTTTGCTGCT < 41bp 0.827204587300155 0.517451791950929 0.92689073 0.184042 prediction 0.619505590698453 Functional Loss - OR2A5 ENSG00000221836 CDS Human protein_coding chr7:143748080 chr7:143748082 nonsynonymous SNV 0.123 1 23 hm5C_associated_SNPs_53203 0 0 0 0 0 unknown 0.500231684322591 0.500231523525857 0.85378146 3.21593467855763e-07 hm5C_site_48555 DeepMRMD:0.85378146;iRNA_m5C:3.21593467855763e-07 48556 chr1 111783975 111783975 1 + G T COAD 111783972 + 111783952 111783992 41 TGCCAGTTCCTGAAAGGAGCCAAGATCACGCGGCTCCAGGA TGCCAGTTCCTGAAAGGAGCCAATATCACGCGGCTCCAGGA < 41bp 0.878140647349063 0.56839035808002 0.18026435 0.027227938 prediction 0.619500578538086 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111783972 chr1:111783975 nonsynonymous SNV 0.208 0 24 hm5C_associated_SNPs_53204 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48556 DeepMRMD:0;iRNA_m5C:0 48557 chr5 129241122 129241122 1 + G T LUSC 129241120 + 129241100 129241140 41 GGACCTGGGCGCGTTTCATCCCGGGCCGCGTGGAGTTCTTT GGACCTGGGCGCGTTTCATCCCTGGCCGCGTGGAGTTCTTT < 41bp 0.809724162257194 0.482171651869899 0.80462945 0.07807377 prediction 0.619448324514388 Functional Loss - CHSY3 ENSG00000198108 CDS Human protein_coding chr5:129241120 chr5:129241122 synonymous SNV . 0 23 hm5C_associated_SNPs_53205 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.6092589 0 hm5C_site_48557 DeepMRMD:0.6092589;iRNA_m5C:0 48558 chr5 35659183 35659183 1 + G T LUAD 35659180 + 35659160 35659200 41 CGGCAGTCCCAGCAGGAGCGCAGGATTGCCGTGCAGCTCAT CGGCAGTCCCAGCAGGAGCGCAGTATTGCCGTGCAGCTCAT < 41bp 0.865193776862537 0.555475734139903 0.8456657 0.28666955 prediction 0.619436085445267 Functional Loss - SPEF2 ENSG00000152582 CDS Human protein_coding chr5:35659180 chr5:35659183 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53206 0 0 1 0 1 Cytosol 0.500200825511628 0.500231645528282 0.6913314 0 hm5C_site_48558 DeepMRMD:0.6913314;iRNA_m5C:0 48559 chr17 56235058 56235058 1 + G T SARC 56235056 + 56235036 56235076 41 CATCAGCTCGCCCCTGCAGGCAGCGTCCATATACGCAGCAT CATCAGCTCGCCCCTGCAGGCATCGTCCATATACGCAGCAT < 41bp 0.809707832377926 0.495251477241902 0.14924103 0.07749224 prediction 0.619415664755853 Functional Loss - MSX2P1 ENSG00000229590 ncRNA_exonic Human processed_pseudogene chr17:56235056 chr17:56235058 . . 0 23 hm5C_associated_SNPs_53207 0 0 0 0 0 unknown 0.500231643921093 0.500231643921119 0 0 hm5C_site_48559 DeepMRMD:0;iRNA_m5C:0 48560 chrX 89177627 89177627 1 + G T HNSC 89177624 + 89177604 89177644 41 GATCCGGAGTCGGCCCCTAGCCAGAAGCTCACCGGAATAGC GATCCGGAGTCGGCCCCTAGCCATAAGCTCACCGGAATAGC < 41bp 0.809696110726527 0.438344793350922 0.8061632 0.36757416 prediction 0.619392221453054 Functional Loss - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177624 chrX:89177627 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_53208 0 0 0 0 0 exosome 0.500231643914419 0.500231643874061 0.6123264 8.07161004701129e-11 hm5C_site_48560 DeepMRMD:0.6123264;iRNA_m5C:8.07161004701129e-11 48561 chr7 148876178 148876178 1 + G T LUAD 148876176 + 148876156 148876196 41 CCCACCTGCCCACACTGTGCCAGGACTTTTACTCACCCATC CCCACCTGCCCACACTGTGCCATGACTTTTACTCACCCATC < 41bp 0.809686195060826 0.491541281464143 0.8274586 0.14678228 prediction 0.619372390121652 Functional Loss - ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148876176 chr7:148876178 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53209 0 0 1 0 0 chromatin 0.500231643921092 0.500231643867037 0.6549172 1.08109077245899e-10 hm5C_site_48561 DeepMRMD:0.6549172;iRNA_m5C:1.08109077245899e-10 48562 chr11 63994371 63994371 1 + G T HNSC 63994368 + 63994348 63994388 41 GGCCACAGCTGCTCCTGCGCCTGGGCCTTACTTCCTACCGA GGCCACAGCTGCTCCTGCGCCTGTGCCTTACTTCCTACCGA < 41bp 0.885590097258402 0.575930164816039 0.7081573 0.18596119 prediction 0.619319864884726 Functional Loss - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63994368 chr11:63994371 nonsynonymous SNV 0.774 4 24 hm5C_associated_SNPs_53210 0 0 1 0 0 Ribosome 0.500231643921085 0.500231643921093 0.4163146 0 hm5C_site_48562 DeepMRMD:0.4163146;iRNA_m5C:0 48563 chr1 158064489 158064489 1 + G T STAD 158064487 + 158064467 158064507 41 CATGAAGACCGCCCGTCTTCCAGGGCAGTGCTCTATGCTGA CATGAAGACCGCCCGTCTTCCATGGCAGTGCTCTATGCTGA < 41bp 0.826093241550657 0.51644693536367 0.92006695 0.23095703 prediction 0.619292612373974 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158064487 chr1:158064489 nonsynonymous SNV 0.381 2 23 hm5C_associated_SNPs_53211 0 0 0 0 1 cytosol 0.500231632499481 0.500180273216772 0.8401339 0.000102718565416993 hm5C_site_48563 DeepMRMD:0.8401339;iRNA_m5C:0.000102718565416993 48564 chr8 20841529 20841529 1 + G T rs541828981 20841526 + 20841506 20841546 41 TGTAAGCCAAGGAAAGAGGCCTGGAACAGATCCTGACCTTA TGTAAGCCAAGGAAAGAGGCCTGTAACAGATCCTGACCTTA < 41bp 0.809644672053398 0.491512944183895 0.21422973 0.14481449 prediction 0.619289344106795 Functional Loss - LINC02153 ENSG00000253199 ncRNA_exonic Human lincRNA chr8:20841526 chr8:20841529 . . 0 24 hm5C_associated_SNPs_53212 0 0 0 0 1 unknown 0.500231643921093 0.500231643921092 0 1.77635683940025e-15 hm5C_site_48564 DeepMRMD:0;iRNA_m5C:1.77635683940025e-15 48565 chr5 148627460 148627460 1 + A T COAD 148627456 + 148627436 148627476 41 CCACCAGCAGCCGGGAAGCCCTGCACACAGCTGGCTATGAG CCACCAGCAGCCGGGAAGCCCTGCTCACAGCTGGCTATGAG < 41bp 0.809640890732891 0.488306590052398 0.06549579 0.06563011 prediction 0.619281781465783 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148627456 chr5:148627460 nonsynonymous SNV 0.992 2 25 hm5C_associated_SNPs_53213 0 0 0 0 1 nucleus 0.500231643959707 0.50023164394446 0 3.04933855943545e-11 hm5C_site_48565 DeepMRMD:0;iRNA_m5C:3.04933855943545e-11 48566 chr7 128441554 128441554 1 + G T LIHC 128441552 + 128441532 128441572 41 TTTAGGTCTCTCAGATTACTCTGGGTTACAAGGTATGAGAG TTTAGGTCTCTCAGATTACTCTTGGTTACAAGGTATGAGAG < 41bp 0.815992860670011 0.506363327634439 0.90976524 0.24219993 prediction 0.619259066071144 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128441552 chr7:128441554 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_53214 0 0 0 0 1 chromatin 0.500231643918783 0.500231643921092 0.81953048 0 hm5C_site_48566 DeepMRMD:0.81953048;iRNA_m5C:0 48567 chr7 150768232 150768232 1 + G T LUSC 150768230 + 150768210 150768250 41 GCCATCAACGCCTTCCTGGACTGCAGCGTGGTGCTGCCGCC GCCATCAACGCCTTCCTGGACTTCAGCGTGGTGCTGCCGCC < 41bp 0.809621340835056 0.489758982079347 0.20198312 0.06922901 prediction 0.619242681670112 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150768230 chr7:150768232 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53215 0 0 1 0 1 Ribosome 0.500231643921119 0.500231643921037 0 1.62980740014973e-13 hm5C_site_48567 DeepMRMD:0;iRNA_m5C:1.62980740014973e-13 48568 chr14 67843242 67843242 1 + G T UCEC 67843239 + 67843219 67843259 41 AGCCTATTCCAGAGGACTGCCTGGGTCTTTGATGACAAGTA AGCCTATTCCAGAGGACTGCCTGTGTCTTTGATGACAAGTA < 41bp 0.809620441158221 0.446947015596029 0.3352461 0.038978547 prediction 0.619240882316441 Functional Loss - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67843239 chr14:67843242 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53216 0 0 1 0 2 Cytosol 0.500231643885997 0.500231643895483 0 0 hm5C_site_48568 DeepMRMD:0;iRNA_m5C:0 48569 chr4 189061119 189061119 1 + G T UCEC 189061117 + 189061097 189061137 41 AGCGAGGCTGAGGAGCATCACAGAGTAAGACAGCTGCTCAG AGCGAGGCTGAGGAGCATCACATAGTAAGACAGCTGCTCAG < 41bp 0.826953385947226 0.517333733688006 0.91163087 0.31041795 prediction 0.61923930451844 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189061117 chr4:189061119 nonsynonymous SNV 0.835 1 23 hm5C_associated_SNPs_53217 0 0 0 0 0 nucleus 0.500231982385593 0.500232223614317 0.82326174 0 hm5C_site_48569 DeepMRMD:0.82326174;iRNA_m5C:0 48570 chr1 212799905 212799905 1 + C A rs146879925 212799908 - 212799888 212799928 41 TCTGCTGTCTCGGCGATGGCCACGTTGGTGCTCCTCTCCGC TCTGCTGTCTCGGCGATGGCCACTTTGGTGCTCCTCTCCGC < 41bp 0.809613796824074 0.450808455668843 0.38008678 0.15841714 prediction 0.619227593648149 Functional Loss - FAM71A ENSG00000162771 CDS Human protein_coding chr1:212799908 chr1:212799905 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_53218 0 0 0 0 0 exosome 0.500233793769506 0.500252553626546 0 0 hm5C_site_48570 DeepMRMD:0;iRNA_m5C:0 48571 chr7 27832703 27832703 1 + G T LUAD 27832700 + 27832680 27832720 41 TCTAGGACAAGACTGATACACTGGAACACGAACTAAGAAGA TCTAGGACAAGACTGATACACTGTAACACGAACTAAGAAGA < 41bp 0.839659075535432 0.530046028895797 0.69701624 0.17737705 prediction 0.61922609327927 Functional Loss - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27832700 chr7:27832703 stopgain 0.991 1 24 hm5C_associated_SNPs_53219 0 0 1 0 1 Ribosome 0.500231683065132 0.500231643921164 0.39403248 7.82879352456689e-08 hm5C_site_48571 DeepMRMD:0.39403248;iRNA_m5C:7.82879352456689e-08 48572 chr19 45183600 45183600 1 + G T LUAD 45183597 + 45183577 45183617 41 AGCCAGAATTGGGCCCTGCTCATGATGCTGGTAAGGCGGGA AGCCAGAATTGGGCCCTGCTCATTATGCTGGTAAGGCGGGA < 41bp 0.809612148236508 0.44637045282926 0.369629 0.3095554 prediction 0.619224296473015 Functional Loss - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45183597 chr19:45183600 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_53220 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643920931 0 3.2263081095607e-13 hm5C_site_48572 DeepMRMD:0;iRNA_m5C:3.2263081095607e-13 48573 chrX 152613123 152613123 1 + G T UCEC 152613121 + 152613101 152613141 41 CCCTACGCCTGCGGCCAGTGCGGCAAGGCCTTCCGCCAGAG CCCTACGCCTGCGGCCAGTGCGTCAAGGCCTTCCGCCAGAG < 41bp 0.819912148223676 0.510315129891768 0.5327923 0.20641378 prediction 0.619194036663815 Functional Loss - ZNF275 ENSG00000063587 CDS Human protein_coding chrX:152613121 chrX:152613123 nonsynonymous SNV 0.948 3 23 hm5C_associated_SNPs_53221 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921093 0.0655846 0 hm5C_site_48573 DeepMRMD:0.0655846;iRNA_m5C:0 48574 chr12 14577453 14577453 1 + G T rs201516379 14577451 + 14577431 14577471 41 CACTGCTGATGATCTCTCCTCTGGTGATCCCACCTCTAGTG CACTGCTGATGATCTCTCCTCTTGTGATCCCACCTCTAGTG < 41bp 0.816025442569582 0.506431373815927 0.4095241 0.084671825 prediction 0.619188137507311 Functional Loss - ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14577451 chr12:14577453 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_53222 0 0 1 0 0 Cytosol 0.500231644426632 0.500231643947706 0 9.57852241967316e-10 hm5C_site_48574 DeepMRMD:0;iRNA_m5C:9.57852241967316e-10 48575 chr6 130378584 130378584 1 + G T LUSC 130378582 + 130378562 130378602 41 AAAGGAAAGAAAGCGTGGTGCTGGGCATCCTACCTGGAAGA AAAGGAAAGAAAGCGTGGTGCTTGGCATCCTACCTGGAAGA < 41bp 0.809590972160101 0.485218074039609 0.4613045 0.1948564 prediction 0.619181944320202 Functional Loss - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130378582 chr6:130378584 nonsynonymous SNV 0.994 5 23 hm5C_associated_SNPs_53223 0 0 1 0 2 nucleoplasm 0.50023164392108 0.500231643921092 0 0 hm5C_site_48575 DeepMRMD:0;iRNA_m5C:0 48576 chr9 125377620 125377620 1 + G T GBM 125377618 + 125377598 125377638 41 CAACACCCTTATGATTCACACAGAAGGTGCTGTTGTAATCA CAACACCCTTATGATTCACACATAAGGTGCTGTTGTAATCA < 41bp 0.810286875340447 0.500706152402369 0.18850797 0.08159688 prediction 0.619161445876156 Functional Loss - OR1Q1 ENSG00000165202 CDS Human protein_coding chr9:125377618 chr9:125377620 stopgain 0.006 0 23 hm5C_associated_SNPs_53224 0 0 0 0 0 unknown 0.50023151869907 0.500231643782976 0 0 hm5C_site_48576 DeepMRMD:0;iRNA_m5C:0 48577 chr8 10383137 10383137 1 + G T LUAD 10383134 + 10383114 10383154 41 TTGCTGCTCCTGTCCCTGGTCACGGGAACTCAGCTCGGTCC TTGCTGCTCCTGTCCCTGGTCACTGGAACTCAGCTCGGTCC < 41bp 0.874223269000293 0.564650334065033 0.90407777 0.25105375 prediction 0.619145869870521 Functional Loss - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10383134 chr8:10383137 synonymous SNV . 0 24 hm5C_associated_SNPs_53225 0 0 0 0 0 exosome 0.50023164587674 0.500236809346707 0.80815554 0 hm5C_site_48577 DeepMRMD:0.80815554;iRNA_m5C:0 48578 chr20 3804698 3804698 1 + G T ESCA 3804695 + 3804675 3804715 41 GTGGTGTGGCTGGGCGTGCTCTCGTTAGGCTTTGCCCTGGT GTGGTGTGGCTGGGCGTGCTCTCTTTAGGCTTTGCCCTGGT < 41bp 0.809567588654777 0.438587681832152 0.30257803 0.29618704 prediction 0.619135177309555 Functional Loss - AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3804695 chr20:3804698 synonymous SNV . 0 24 hm5C_associated_SNPs_53226 0 0 1 0 0 Ribosome 0.500242424670581 0.500231643365869 0 2.15626094239862e-05 hm5C_site_48578 DeepMRMD:0;iRNA_m5C:2.15626094239862e-05 48579 chr13 113803407 113803407 1 + G T LUSC 113803405 + 113803385 113803425 41 GCCTGCCTCCCCGAGCGTGACTGGGCCGAGTCCACGCTGAT GCCTGCCTCCCCGAGCGTGACTTGGCCGAGTCCACGCTGAT < 41bp 0.809557606355417 0.487701697266022 0.86976016 0.3290804 prediction 0.619115212710833 Functional Loss - F10 ENSG00000126218 CDS Human protein_coding chr13:113803405 chr13:113803407 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_53227 0 0 1 0 0 nucleus 0.500231643974217 0.500231643921097 0.73952032 1.06239683717035e-10 hm5C_site_48579 DeepMRMD:0.73952032;iRNA_m5C:1.06239683717035e-10 48580 chr6 25771165 25771165 1 + G T LUAD 25771162 + 25771142 25771182 41 TCTTCTGTTCAGGGTCAATGCTGGGGTCCTTCATTGTTCTA TCTTCTGTTCAGGGTCAATGCTGTGGTCCTTCATTGTTCTA < 41bp 0.873198685729257 0.563644653881121 0.46309337 0.059865415 prediction 0.619108063696272 Functional Loss - SLC17A4 ENSG00000146039 CDS Human protein_coding chr6:25771162 chr6:25771165 nonsynonymous SNV 0.011 4 24 hm5C_associated_SNPs_53228 0 0 0 0 1 exosome 0.500231643921092 0.500231643923881 0 0 hm5C_site_48580 DeepMRMD:0;iRNA_m5C:0 48581 chr12 53513037 53513037 1 + G T UCEC 53513035 + 53513015 53513055 41 TATCCTGCATGCCACGTTGCCAGGTGAGCCAACTAAGGTAG TATCCTGCATGCCACGTTGCCATGTGAGCCAACTAAGGTAG < 41bp 0.809553527772878 0.479464564750841 0.91304135 0.89321965 prediction 0.619107055545755 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53513035 chr12:53513037 nonsynonymous SNV 0.990 4 23 hm5C_associated_SNPs_53229 0 0 0 7 1 cytosol 0.500231643841358 0.500231644146169 0.0396433999999999 0 hm5C_site_48581 DeepMRMD:0.0396433999999999;iRNA_m5C:0 48582 chr6 32007878 32007878 1 + G T LUAD 32007875 + 32007855 32007895 41 AAGAGGGCTCTGGACAGCTCCTGGAAGGGCACGTGCACATG AAGAGGGCTCTGGACAGCTCCTGTAAGGGCACGTGCACATG < 41bp 0.811058601303247 0.501505557839279 0.40270224 0.16947576 prediction 0.619106086927935 Functional Loss - CYP21A2 ENSG00000231852 CDS Human protein_coding chr6:32007875 chr6:32007878 stopgain 0.223 1 24 hm5C_associated_SNPs_53230 0 0 0 0 1 Cytosol 0.500231527632281 0.500236826634949 0 0 hm5C_site_48582 DeepMRMD:0;iRNA_m5C:0 48583 chr20 17716348 17716348 1 + G T COAD 17716345 + 17716325 17716365 41 GGACAATTCCTTCTGATGCACAAGAATGAAGCCGAGTTTCA GGACAATTCCTTCTGATGCACAATAATGAAGCCGAGTTTCA < 41bp 0.809550805948008 0.433264427342114 0.2160531 0.0916383 prediction 0.619101611896017 Functional Loss - BANF2 ENSG00000125888 CDS Human protein_coding chr20:17716345 chr20:17716348 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_53231 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_48583 DeepMRMD:0;iRNA_m5C:0 48584 chr16 8735041 8735041 1 + G T STAD 8735039 + 8735019 8735059 41 GCTGAAGGACGACCTCTGCACAGGTGTGTGTTTCTCTCGGA GCTGAAGGACGACCTCTGCACATGTGTGTGTTTCTCTCGGA < 41bp 0.830113112165043 0.520563807722272 0.73143846 0.22093946 prediction 0.619098608885543 Functional Loss - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8735039 chr16:8735041 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_53232 0 0 1 0 2 Cytosol 0.50023138969024 0.500231650188184 0.46287692 0 hm5C_site_48584 DeepMRMD:0.46287692;iRNA_m5C:0 48585 chr3 46450158 46450158 1 + G T UCEC 46450155 + 46450135 46450175 41 CTGCCAGCTGATGAGACATTCTGGAAGCATTTTCTGACTTT CTGCCAGCTGATGAGACATTCTGTAAGCATTTTCTGACTTT < 41bp 0.870894394524212 0.561368591547554 0.8360002 0.30389428 prediction 0.619051605953316 Functional Loss - CCRL2 ENSG00000121797 CDS Human protein_coding chr3:46450155 chr3:46450158 nonsynonymous SNV 0.296 4 24 hm5C_associated_SNPs_53233 0 0 0 0 0 exosome 0.500231758193351 0.500231644084551 0.6720004 2.28217599929081e-07 hm5C_site_48585 DeepMRMD:0.6720004;iRNA_m5C:2.28217599929081e-07 48586 chr14 20404516 20404516 1 + A C STAD 20404512 + 20404492 20404532 41 ATCGGTGTCCGATGCAGGTCCTCCAGTGGGTCATCTAAGGC ATCGGTGTCCGATGCAGGTCCTCCCGTGGGTCATCTAAGGC < 41bp 0.809524338236953 0.405885723182724 0.9503541 0.071576595 prediction 0.619048676473907 Functional Loss - OR4K1 ENSG00000155249 CDS Human protein_coding chr14:20404512 chr14:20404516 nonsynonymous SNV 0.896 0 25 hm5C_associated_SNPs_53234 0 0 0 0 0 unknown 0.500231621710182 0.500231588010469 0.9007082 6.73994260402822e-08 hm5C_site_48586 DeepMRMD:0.9007082;iRNA_m5C:6.73994260402822e-08 48587 chr2 73446061 73446061 1 + G T HNSC 73446059 + 73446039 73446079 41 CGTAGAACGGCCCCTGGTGGCTGCACAGTTTCTCTGGAATG CGTAGAACGGCCCCTGGTGGCTTCACAGTTTCTCTGGAATG < 41bp 0.816619826703932 0.50710113275137 0.2935686 0.21481761 prediction 0.619037387905124 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73446059 chr2:73446061 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_53235 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48587 DeepMRMD:0;iRNA_m5C:0 48588 chr12 57850385 57850385 1 + G T UCEC 57850382 + 57850362 57850402 41 CGGGACTGGATACTGCAGCCCGAGGGGTACCAGCTGAATTA CGGGACTGGATACTGCAGCCCGATGGGTACCAGCTGAATTA < 41bp 0.809515692740004 0.428094498820869 0.8828058 0.42047894 prediction 0.619031385480008 Functional Loss - INHBE ENSG00000139269 CDS Human protein_coding chr12:57850382 chr12:57850385 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_53236 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643920272 0.7656116 1.64179780881568e-12 hm5C_site_48588 DeepMRMD:0.7656116;iRNA_m5C:1.64179780881568e-12 48589 chr16 56678084 56678084 1 + G T UCEC 56678081 + 56678061 56678101 41 GAGTACAAATGCACCTCCTGCAAGAAGAGTGAGTGTGGGGC GAGTACAAATGCACCTCCTGCAATAAGAGTGAGTGTGGGGC < 41bp 0.809512604328496 0.447090130168139 0.32161367 0.054279298 prediction 0.619025208656993 Functional Loss - MT1DP ENSG00000205361 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:56678081 chr16:56678084 . . 0 24 hm5C_associated_SNPs_53237 0 0 0 6 1 unknown 0.500231643888182 0.500231648435155 0 0 hm5C_site_48589 DeepMRMD:0;iRNA_m5C:0 48590 chr19 6750343 6750343 1 + G T BLCA 6750341 + 6750321 6750361 41 GAAAGTCGAGTCCTTAGCAACCGGGGAGACAGCCTGAGCCG GAAAGTCGAGTCCTTAGCAACCTGGGAGACAGCCTGAGCCG < 41bp 0.838229618605719 0.528723346123364 0.9131447 0.41958487 prediction 0.619012544964711 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750341 chr19:6750343 nonsynonymous SNV 0.699 3 23 hm5C_associated_SNPs_53238 0 0 1 0 2 Ribosome 0.50023164452172 0.500231644175108 0.8262894 6.93224144754367e-10 hm5C_site_48590 DeepMRMD:0.8262894;iRNA_m5C:6.93224144754367e-10 48591 chrX 56590825 56590825 1 + G T UCEC 56590823 + 56590803 56590843 41 AGCTCCAGAGCCAGATGCAGCAGCAGCTTATGGCCAGCCCT AGCTCCAGAGCCAGATGCAGCATCAGCTTATGGCCAGCCCT < 41bp 0.825415033298061 0.515909938446398 0.19243413 0.025915325 prediction 0.619010189703325 Functional Loss - UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56590823 chrX:56590825 nonsynonymous SNV 0.876 1 23 hm5C_associated_SNPs_53239 0 0 1 0 0 nucleus 0.500231643921311 0.500231643921097 0 4.27435864480685e-13 hm5C_site_48591 DeepMRMD:0;iRNA_m5C:4.27435864480685e-13 48592 chr4 128565128 128565128 1 + G T SKCM 128565125 + 128565105 128565145 41 CAAGTGGAGCTGGAGAAGAACCGGAAAGCAGGGTGATGGAG CAAGTGGAGCTGGAGAAGAACCGTAAAGCAGGGTGATGGAG < 41bp 0.809494551374467 0.445910581789128 0.8873876 0.34716344 prediction 0.618989102748934 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128565125 chr4:128565128 nonsynonymous SNV 0.062 0 24 hm5C_associated_SNPs_53240 0 0 1 0 1 nucleolus 0.50023164390825 0.500231644001528 0.7747752 0 hm5C_site_48592 DeepMRMD:0.7747752;iRNA_m5C:0 48593 chr1 109440160 109440160 1 + G T SKCM 109440157 + 109440137 109440177 41 AAGCGAAAGCTAGTGGTAATCTGGGAAACACCTTAAAAGTT AAGCGAAAGCTAGTGGTAATCTGTGAAACACCTTAAAAGTT < 41bp 0.864746114352486 0.55525832530603 0.8910565 0.3619517 prediction 0.618975578092913 Functional Loss - GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109440157 chr1:109440160 stopgain 1.000 1 24 hm5C_associated_SNPs_53241 0 0 1 0 2 Endoplasmic reticulum 0.500231643930614 0.500231644776318 0.782113 0 hm5C_site_48593 DeepMRMD:0.782113;iRNA_m5C:0 48594 chr19 35173736 35173736 1 + G T UCEC 35173733 + 35173713 35173753 41 CTCATGAAGAGTGGGCATGCCTAGATTCTGCTCAGAGGGAC CTCATGAAGAGTGGGCATGCCTATATTCTGCTCAGAGGGAC < 41bp 0.864751129525658 0.555265949918934 0.06884381 0.13176009 prediction 0.618970359213448 Functional Loss - ZNF302 ENSG00000089335 CDS Human protein_coding chr19:35173733 chr19:35173736 nonsynonymous SNV 0.760 3 24 hm5C_associated_SNPs_53242 0 0 0 0 2 exosome 0.5002316439925 0.500207565253139 0 4.81574787205563e-05 hm5C_site_48594 DeepMRMD:0;iRNA_m5C:4.81574787205563e-05 48595 chr11 124744131 124744131 1 + G T UCEC 124744129 + 124744109 124744149 41 TCTCTGAGCCTGTCCGTACACAGGGTAAGGTCAGAGTCCCT TCTCTGAGCCTGTCCGTACACATGGTAAGGTCAGAGTCCCT < 41bp 0.834817098425557 0.525342686799452 0.9139367 0.40030342 prediction 0.61894882325221 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124744129 chr11:124744131 nonsynonymous SNV 0.881 3 23 hm5C_associated_SNPs_53243 0 0 0 0 0 exosome 0.500231643921093 0.500231643921102 0.8278734 0 hm5C_site_48595 DeepMRMD:0.8278734;iRNA_m5C:0 48596 chrX 86919819 86919819 1 + G T UCEC 86919816 + 86919796 86919836 41 TGGCACCTCTGAGTGTTCCTCGAGATGCTGTTGCTGTGTGC TGGCACCTCTGAGTGTTCCTCGATATGCTGTTGCTGTGTGC < 41bp 0.809473524654132 0.45085710090947 0.9212861 0.62765795 prediction 0.618947049308265 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86919816 chrX:86919819 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53244 0 0 0 0 1 chromatin 0.500231280598153 0.500304797115387 0.5872563 0 hm5C_site_48596 DeepMRMD:0.5872563;iRNA_m5C:0 48597 chr8 22876322 22876322 1 + A C rs10088466 22876318 + 22876298 22876338 41 TCAGGGAAAGGGGCACTGACCTGTAGTGAAAGGCCACAGGA TCAGGGAAAGGGGCACTGACCTGTCGTGAAAGGCCACAGGA < 41bp 0.809471701735664 0.442167776069701 0.32119215 0.23421171 prediction 0.618943403471327 Functional Loss - RHOBTB2 ENSG00000245025 ncRNA_intronic Human antisense chr8:22876318 chr8:22876322 . . 0 25 hm5C_associated_SNPs_53245 0 0 1 0 0 cytosol 0.500231643921089 0.500231643332635 0 1.17690657219782e-09 hm5C_site_48597 DeepMRMD:0;iRNA_m5C:1.17690657219782e-09 48598 chr8 8560187 8560187 1 + G T LIHC 8560184 + 8560164 8560204 41 ACCTCGCTGGCCGCCACGGTCCTGGGGCTTCTGCTGGCGTC ACCTCGCTGGCCGCCACGGTCCTTGGGCTTCTGCTGGCGTC < 41bp 0.809462371332217 0.441407535220039 0.7703227 0.051876724 prediction 0.618924742664434 Functional Loss - CLDN23 ENSG00000253958 CDS Human protein_coding chr8:8560184 chr8:8560187 synonymous SNV . 0 24 hm5C_associated_SNPs_53246 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500252769869451 0.5406454 0 hm5C_site_48598 DeepMRMD:0.5406454;iRNA_m5C:0 48599 chr7 27194314 27194314 1 + C A rs17472084 27194317 - 27194297 27194337 41 GGACTGAGCGGCCGCAGAGACTGGGTCGCCTTGGATTCCCT GGACTGAGCGGCCGCAGAGACTGTGTCGCCTTGGATTCCCT < 41bp 0.841799648943033 0.532340012086329 0.81676555 0.11667335 prediction 0.618919273713408 Functional Loss - HOXA-AS3 ENSG00000254369 ncRNA_exonic Human antisense chr7:27194317 chr7:27194314 . . 0 24 hm5C_associated_SNPs_53247 0 0 1 0 0 unknown 0.500231643049646 0.500231639461144 0.6335311 7.17700299190938e-09 hm5C_site_48599 DeepMRMD:0.6335311;iRNA_m5C:7.17700299190938e-09 48600 chr11 64085785 64085785 1 + A C rs7938623 64085781 + 64085761 64085801 41 CTGCGGCAGCGGCAGCAAGACGGTACAGTGAAGGAGAGTGG CTGCGGCAGCGGCAGCAAGACGGTCCAGTGAAGGAGAGTGG < 41bp 0.809458209202345 0.453144594491111 0.22486356 0.3257162 prediction 0.61891641840469 Functional Loss - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64085781 chr11:64085785 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_53248 0 0 1 0 1 Cytosol 0.500231643570419 0.500231643664421 0 0 hm5C_site_48600 DeepMRMD:0;iRNA_m5C:0 48601 chr11 65714815 65714815 1 + G T UCEC 65714813 + 65714793 65714833 41 CGCAAAACCTGAAGGCGAGACAGCAGCTGGGAGCCTGGGGC CGCAAAACCTGAAGGCGAGACATCAGCTGGGAGCCTGGGGC < 41bp 0.809445244149547 0.477909409797558 0.91058373 0.6927167 prediction 0.618890488299094 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65714813 chr11:65714815 unknown 0.003 0 23 hm5C_associated_SNPs_53249 0 0 0 0 0 exosome 0.500230458372269 0.500231644106174 0.43573406 0 hm5C_site_48601 DeepMRMD:0.43573406;iRNA_m5C:0 48602 chr1 32660671 32660671 1 + G T BLCA 32660668 + 32660648 32660688 41 ACAGTGGCCCTGAGAGGAGGCCAGAGGGGCCTGGGGCTCAA ACAGTGGCCCTGAGAGGAGGCCATAGGGGCCTGGGGCTCAA < 41bp 0.8094241940718 0.450279519085522 0.86276054 0.8797364 prediction 0.6188483881436 Functional Loss - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32660668 chr1:32660671 stopgain 0.997 0 24 hm5C_associated_SNPs_53250 0 0 0 0 0 Nucleus 0.500231643921093 0.500231643921092 0 4.44089209850063e-16 hm5C_site_48602 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 48603 chr3 14860815 14860815 1 + G T UCEC 14860812 + 14860792 14860832 41 CCGCTGAGGGAGGATGAACCCAAGGACGAGGGCAGTGTGGG CCGCTGAGGGAGGATGAACCCAATGACGAGGGCAGTGTGGG < 41bp 0.809422041504817 0.434992122374954 0.42141718 0.3007421 prediction 0.618844083009633 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14860812 chr3:14860815 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_53251 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_48603 DeepMRMD:0;iRNA_m5C:0 48604 chr1 3680038 3680038 1 + G T STAD 3680036 + 3680016 3680056 41 GACCAGATACTCCCTTGCAACAGGTAGGGCCTCGGCGGGGG GACCAGATACTCCCTTGCAACATGTAGGGCCTCGGCGGGGG < 41bp 0.82944971924254 0.520035106455676 0.7259426 0.25377375 prediction 0.618829225573729 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3680036 chr1:3680038 stopgain 0.415 1 23 hm5C_associated_SNPs_53252 0 0 0 0 1 exosome 0.500231643921092 0.500231643921095 0.4518852 0 hm5C_site_48604 DeepMRMD:0.4518852;iRNA_m5C:0 48605 chrX 102841679 102841679 1 + G T UCEC 102841676 + 102841656 102841696 41 TGGAAAATGAAGAACAGCCACAAGACGAGAGAAAGCCAGAA TGGAAAATGAAGAACAGCCACAATACGAGAGAAAGCCAGAA < 41bp 0.809411219156678 0.47051367753396 0.7712424 0.3282752 prediction 0.618822438313356 Functional Loss - TCEAL4 ENSG00000133142 CDS Human protein_coding chrX:102841676 chrX:102841679 nonsynonymous SNV 0.971 1 24 hm5C_associated_SNPs_53253 0 0 1 0 1 Ribosome 0.500231643484302 0.500231684378429 0.5424848 0 hm5C_site_48605 DeepMRMD:0.5424848;iRNA_m5C:0 48606 chr7 48141467 48141467 1 + G T HNSC 48141465 + 48141445 48141485 41 TCCCGGATGAAAGCCTTCATCAGGTGCGTTGGTGCAGAGCT TCCCGGATGAAAGCCTTCATCATGTGCGTTGGTGCAGAGCT < 41bp 0.827087706256787 0.517678024132597 0.9233594 0.7657943 prediction 0.618819364248379 Functional Loss - UPP1 ENSG00000183696 CDS Human protein_coding chr7:48141465 chr7:48141467 nonsynonymous SNV 0.173 1 23 hm5C_associated_SNPs_53254 0 0 1 0 2 Ribosome 0.500231643895166 0.500231643887109 0.3151302 1.61146651578292e-11 hm5C_site_48606 DeepMRMD:0.3151302;iRNA_m5C:1.61146651578292e-11 48607 chr17 32964365 32964365 1 + G T UCEC 32964362 + 32964342 32964382 41 AGTGGCTGAGGCCGAGGGGTCAGGGGAGCTGCTTCGCGCAG AGTGGCTGAGGCCGAGGGGTCAGTGGAGCTGCTTCGCGCAG < 41bp 0.886651649620078 0.577261015283445 0.91076356 0.77432436 prediction 0.618781268673265 Functional Loss - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32964362 chr17:32964365 nonsynonymous SNV 0.048 4 24 hm5C_associated_SNPs_53255 0 0 0 0 0 exosome 0.500231648947803 0.50023161950217 0.2728784 5.8891266307981e-08 hm5C_site_48607 DeepMRMD:0.2728784;iRNA_m5C:5.8891266307981e-08 48608 chr17 7162107 7162107 1 + G T COAD 7162104 + 7162084 7162124 41 TGGGGGTGGGGTCAGGGATTCTAGGGATGGGGCAGAGTGGC TGGGGGTGGGGTCAGGGATTCTATGGATGGGGCAGAGTGGC < 41bp 0.809361013283441 0.444185088715793 0.8913591 0.57999706 prediction 0.618722026566883 Functional Loss - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7162104 chr17:7162107 stoploss 0.000 0 24 hm5C_associated_SNPs_53256 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921093 0.62272408 0 hm5C_site_48608 DeepMRMD:0.62272408;iRNA_m5C:0 48609 chr6 35254147 35254147 1 + G T LUSC 35254145 + 35254125 35254165 41 CCTGTGCAGCTGGAAGATGGCAGCATGGCTTACATACACCG CCTGTGCAGCTGGAAGATGGCATCATGGCTTACATACACCG < 41bp 0.809349410558272 0.496834852878491 0.28823066 0.17252237 prediction 0.618698821116544 Functional Loss - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35254145 chr6:35254147 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53257 0 0 1 0 2 Cytosol 0.500231673676671 0.500249762691788 0 0 hm5C_site_48609 DeepMRMD:0;iRNA_m5C:0 48610 chr8 28574968 28574968 1 + G T LUSC 28574966 + 28574946 28574986 41 TCGGTGCCGTCCCGGTGGTGCTGGGGGAGCAGGTCCAGCTT TCGGTGCCGTCCCGGTGGTGCTTGGGGAGCAGGTCCAGCTT < 41bp 0.80933221839059 0.489722420318324 0.8702728 0.7186027 prediction 0.61866443678118 Functional Loss - EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28574966 chr8:28574968 synonymous SNV . 0 23 hm5C_associated_SNPs_53258 0 0 1 0 0 Endoplasmic reticulum 0.50023164319536 0.500231643913188 0.3033402 0 hm5C_site_48610 DeepMRMD:0.3033402;iRNA_m5C:0 48611 chr14 96129828 96129828 1 + G T UCEC 96129826 + 96129806 96129846 41 CCAAGTGCATCCGAGCAGCGCAGGATCCAGGTTTCCTGCCC CCAAGTGCATCCGAGCAGCGCATGATCCAGGTTTCCTGCCC < 41bp 0.817925358090953 0.508594843112349 0.81798804 0.21326244 prediction 0.618661029957209 Functional Loss - TCL6 ENSG00000187621;ENSG00000259084 ncRNA_exonic Human other chr14:96129826 chr14:96129828 . . 0 23 hm5C_associated_SNPs_53259 0 0 0 0 0 Nucleus 0.500231643921093 0.500231643921089 0.63597608 7.99360577730113e-15 hm5C_site_48611 DeepMRMD:0.63597608;iRNA_m5C:7.99360577730113e-15 48612 chr4 134073279 134073279 1 + G T COAD 134073276 + 134073256 134073296 41 ATGAGCTGGTGATCGAGGTGCGCGACCATGGGCAGCCGCCC ATGAGCTGGTGATCGAGGTGCGCTACCATGGGCAGCCGCCC < 41bp 0.809324720462774 0.443587016718036 0.85258955 0.87038183 prediction 0.618649440925548 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134073276 chr4:134073279 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53260 0 0 0 0 0 cytosol 0.500245947803732 0.500231642212403 0 2.86111826570679e-05 hm5C_site_48612 DeepMRMD:0;iRNA_m5C:2.86111826570679e-05 48613 chr7 123594291 123594291 1 + G T READ 123594288 + 123594268 123594308 41 TGTGGGGTTATTATCTTTTTCCGGATTGTTACAACCATCAC TGTGGGGTTATTATCTTTTTCCGTATTGTTACAACCATCAC < 41bp 0.809313885891066 0.44914913556615 0.40648565 0.24988323 prediction 0.618627771782132 Functional Loss - SPAM1 ENSG00000106304 CDS Human protein_coding chr7:123594288 chr7:123594291 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_53261 0 0 0 0 0 Nucleus 0.500231657329693 0.500231627031565 0 6.05962553468231e-08 hm5C_site_48613 DeepMRMD:0;iRNA_m5C:6.05962553468231e-08 48614 chr9 120474795 120474795 1 + A C PRAD 120474791 + 120474771 120474811 41 TTTCTGGACTATCAAGTTTACAGAAGCTGGTGGCTGTGGAG TTTCTGGACTATCAAGTTTACAGACGCTGGTGGCTGTGGAG < 41bp 0.809308370035675 0.450033275798167 0.26605627 0.33129716 prediction 0.61861674007135 Functional Loss - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120474791 chr9:120474795 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_53262 0 0 1 0 0 cytosol 0.500231643937766 0.50023164428177 0 0 hm5C_site_48614 DeepMRMD:0;iRNA_m5C:0 48615 chr1 109707275 109707275 1 + G T SKCM 109707273 + 109707253 109707293 41 GCCTCTCAGCCAACATGGAGCTGGATGACAGTGCTGCTGAG GCCTCTCAGCCAACATGGAGCTTGATGACAGTGCTGCTGAG < 41bp 0.809306578290869 0.492753637417261 0.50431484 0.1399231 prediction 0.618613156581737 Functional Loss - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109707273 chr1:109707275 synonymous SNV . 0 23 hm5C_associated_SNPs_53263 0 0 0 0 1 exosome 0.500232993292524 0.500231825396879 0.00862968000000008 2.33579129038652e-06 hm5C_site_48615 DeepMRMD:0.00862968000000008;iRNA_m5C:2.33579129038652e-06 48616 chr12 57971529 57971529 1 + G T UCEC 57971527 + 57971507 57971547 41 AGCGACATGAGCAGTCCAAGCAGGACCTCAAGGGTCTGGAG AGCGACATGAGCAGTCCAAGCATGACCTCAAGGGTCTGGAG < 41bp 0.841102344692193 0.531797302286413 0.7792884 0.18331942 prediction 0.61861008481156 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57971527 chr12:57971529 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53264 0 0 1 0 2 Cytosol 0.50023164392154 0.500231643921118 0.5585768 8.45545855554519e-13 hm5C_site_48616 DeepMRMD:0.5585768;iRNA_m5C:8.45545855554519e-13 48617 chr5 3599491 3599491 1 + G T LUSC 3599488 + 3599468 3599508 41 CGCGAGAGCACCAGCACGCTCAAGGCCTGGCTCAACGAGCA CGCGAGAGCACCAGCACGCTCAATGCCTGGCTCAACGAGCA < 41bp 0.809300211913744 0.432674082166342 0.9107394 0.6435465 prediction 0.618600423827488 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3599488 chr5:3599491 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_53265 0 0 0 0 0 exosome 0.500231643959373 0.500231632984627 0.5343858 2.19494911135598e-08 hm5C_site_48617 DeepMRMD:0.5343858;iRNA_m5C:2.19494911135598e-08 48618 chr16 55360345 55360345 1 + G T rs200373286 55360343 + 55360323 55360363 41 TCCACCCCAGCGCCCGCTCTCTGCTGCGCACCCTACGATAG TCCACCCCAGCGCCCGCTCTCTTCTGCGCACCCTACGATAG < 41bp 0.838856131085716 0.529560048463048 0.08891696 0.040880293 prediction 0.618592165245337 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360343 chr16:55360345 nonsynonymous SNV 0.889 2 23 hm5C_associated_SNPs_53266 0 0 0 0 1 exosome 0.500231643920686 0.500231643921089 0 0 hm5C_site_48618 DeepMRMD:0;iRNA_m5C:0 48619 chr13 115090647 115090647 1 + G T LUAD 115090645 + 115090625 115090665 41 TCCAGAGCTCAGAAAACCCTCAGGGTCACCAGATCTTTGGA TCCAGAGCTCAGAAAACCCTCATGGTCACCAGATCTTTGGA < 41bp 0.809282918412064 0.483873302598513 0.912488 0.43022048 prediction 0.618565836824128 Functional Loss - CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115090645 chr13:115090647 nonsynonymous SNV 0.964 2 23 hm5C_associated_SNPs_53267 0 0 1 0 0 nucleus 0.500231643917076 0.500231645549788 0.824976 0 hm5C_site_48619 DeepMRMD:0.824976;iRNA_m5C:0 48620 chr7 55229240 55229240 1 + G T ESCA 55229238 + 55229218 55229258 41 TTGTGCTCCCCCGAGGGCTGCTGGGGCCCGGAGCCCAGGGA TTGTGCTCCCCCGAGGGCTGCTTGGGCCCGGAGCCCAGGGA < 41bp 0.809282552613669 0.482743969688769 0.90051734 0.54744434 prediction 0.618565105227338 Functional Loss - EGFR ENSG00000146648 CDS Human protein_coding chr7:55229238 chr7:55229240 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_53268 0 0 1 0 2 Nucleus 0.500231643921093 0.500231643921092 0.706146 4.44089209850063e-16 hm5C_site_48620 DeepMRMD:0.706146;iRNA_m5C:4.44089209850063e-16 Multiple complex diseases 48621 chr2 174228038 174228038 1 + G T SARC 174228036 + 174228016 174228056 41 CAGGGTGGCGATGAAGTTTCCAGCGCGGAGTACCAGGGGAG CAGGGTGGCGATGAAGTTTCCATCGCGGAGTACCAGGGGAG < 41bp 0.835434808738467 0.526171082577039 0.6393727 0.40931106 prediction 0.618527452322854 Functional Loss - CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174228036 chr2:174228038 nonsynonymous SNV 0.155 0 23 hm5C_associated_SNPs_53269 0 0 1 0 1 Nucleus 0.500231639002674 0.500231643563327 0.2787454 0 hm5C_site_48621 DeepMRMD:0.2787454;iRNA_m5C:0 48622 chr4 164272498 164272498 1 + G T UCEC 164272495 + 164272475 164272515 41 GAGAGTAAAACGTTCTGTTACAAGAATAAAAAAGAGATCTC GAGAGTAAAACGTTCTGTTACAATAATAAAAAAGAGATCTC < 41bp 0.847394244881695 0.538140810367636 0.2265586 0.12888345 prediction 0.618506869028118 Functional Loss - NPY5R ENSG00000164129 CDS Human protein_coding chr4:164272495 chr4:164272498 nonsynonymous SNV 0.984 4 24 hm5C_associated_SNPs_53270 0 0 0 0 0 unknown 0.500231644034457 0.500231685567433 0 0 hm5C_site_48622 DeepMRMD:0;iRNA_m5C:0 Multiple complex diseases 48623 chr7 63709511 63709511 1 + G T LUSC 63709508 + 63709488 63709528 41 GCAGATTTATGGCTAAAAGACCGGGATCCCCTGGAAGCCGA GCAGATTTATGGCTAAAAGACCGTGATCCCCTGGAAGCCGA < 41bp 0.868165442308919 0.558923281299248 0.8259956 0.13554367 prediction 0.618484322019341 Functional Loss - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63709508 chr7:63709511 stopgain 0.000 0 24 hm5C_associated_SNPs_53271 0 0 0 0 1 unknown 0.500231643921092 0.500232081011153 0.6519912 0 hm5C_site_48623 DeepMRMD:0.6519912;iRNA_m5C:0 48624 chr7 141352593 141352593 1 + G T UCEC 141352591 + 141352571 141352611 41 ATTCTCTTCTCCCCAGGGAGCAGGGGGCTCTTTTAGCATTG ATTCTCTTCTCCCCAGGGAGCATGGGGCTCTTTTAGCATTG < 41bp 0.80923714954259 0.489200423317895 0.9115528 0.44890383 prediction 0.618474299085179 Functional Loss - AGK ENSG00000006530 CDS Human protein_coding chr7:141352591 chr7:141352593 nonsynonymous SNV 0.657 1 23 hm5C_associated_SNPs_53272 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643951951 0.8231056 0 hm5C_site_48624 DeepMRMD:0.8231056;iRNA_m5C:0 48625 chr10 89469006 89469006 1 + G T UCEC 89469003 + 89468983 89469023 41 TATCAGGCCCACCATGTGAGCAGGAATAAGAGAGGGCAAGT TATCAGGCCCACCATGTGAGCAGTAATAAGAGAGGGCAAGT < 41bp 0.871444345485908 0.562225751080134 0.8956371 0.38033062 prediction 0.618437188811549 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89469003 chr10:89469006 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53273 0 0 1 0 2 Cytosol 0.50023516056052 0.500315607943942 0.7912742 0 hm5C_site_48625 DeepMRMD:0.7912742;iRNA_m5C:0 48626 chr9 35733119 35733119 1 + G T UCEC 35733116 + 35733096 35733136 41 ACCACACCTACTCCCTCCCACGGGAAACTGTCTCTATGGAT ACCACACCTACTCCCTCCCACGGTAAACTGTCTCTATGGAT < 41bp 0.809197511065649 0.430984358498588 0.3165849 0.02597341 prediction 0.618395022131298 Functional Loss - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733116 chr9:35733119 stopgain 0.017 0 24 hm5C_associated_SNPs_53274 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643920668 0 8.4909856923332e-13 hm5C_site_48626 DeepMRMD:0;iRNA_m5C:8.4909856923332e-13 48627 chr14 31142521 31142521 1 + G T COAD 31142518 + 31142498 31142538 41 AACTAGAATCTTACAGAGCACAGGAAGATGAGGTCAAACGA AACTAGAATCTTACAGAGCACAGTAAGATGAGGTCAAACGA < 41bp 0.809192246319491 0.462933311485392 0.4834195 0.20441088 prediction 0.618384492638981 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31142518 chr14:31142521 stopgain 0.997 1 24 hm5C_associated_SNPs_53275 0 0 1 0 2 Cytosol 0.500231707444017 0.500231644455498 0 1.25977037690461e-07 hm5C_site_48627 DeepMRMD:0;iRNA_m5C:1.25977037690461e-07 48628 chr19 41597732 41597732 1 + G T UCEC 41597729 + 41597709 41597749 41 GGGCTGGAGGACTTCATCGCCAAGAAGGTGGAGCACAACCA GGGCTGGAGGACTTCATCGCCAATAAGGTGGAGCACAACCA < 41bp 0.809188336819506 0.435877887655729 0.4674236 0.20248374 prediction 0.618376673639011 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41597729 chr19:41597732 nonsynonymous SNV 0.670 1 24 hm5C_associated_SNPs_53276 0 0 0 0 2 unknown 0.50023165319818 0.500231643921057 0 1.85542463615462e-08 hm5C_site_48628 DeepMRMD:0;iRNA_m5C:1.85542463615462e-08 48629 chr5 140764701 140764701 1 + G T STAD 140764698 + 140764678 140764718 41 TCGCACTTTGTGGGCATGGACGGGGTGCAGGCTTTCCTGCA TCGCACTTTGTGGGCATGGACGGTGTGCAGGCTTTCCTGCA < 41bp 0.809186053902353 0.439537462960372 0.93501073 0.437098 prediction 0.618372107804706 Functional Loss - PCDHGA7 ENSG00000253537 CDS Human protein_coding chr5:140764698 chr5:140764701 synonymous SNV . 0 24 hm5C_associated_SNPs_53277 0 0 0 0 0 exosome 0.500231643920718 0.500231643144917 0.87002146 1.55160129189369e-09 hm5C_site_48629 DeepMRMD:0.87002146;iRNA_m5C:1.55160129189369e-09 48630 chr11 25004797 25004797 1 + G T LUAD 25004794 + 25004774 25004814 41 ACTCGGATGTTACTCCCACCCAGGAATATTGCCTCTAAGCT ACTCGGATGTTACTCCCACCCAGTAATATTGCCTCTAAGCT < 41bp 0.809171933795983 0.494046185886567 0.8452246 0.38853794 prediction 0.618343867591966 Functional Loss - LUZP2 ENSG00000187398 CDS Human protein_coding chr11:25004794 chr11:25004797 nonsynonymous SNV 0.484 0 24 hm5C_associated_SNPs_53278 0 0 0 0 1 exosome 0.500231643718196 0.500231674075175 0.6904492 0 hm5C_site_48630 DeepMRMD:0.6904492;iRNA_m5C:0 48631 chr1 247587562 247587562 1 + G T GBM 247587559 + 247587539 247587579 41 GCCTTGTGACACAGAGGAGCCTGGGGGACCTGATCATGAGC GCCTTGTGACACAGAGGAGCCTGTGGGACCTGATCATGAGC < 41bp 0.809168547126863 0.437784248262691 0.87837124 0.3017433 prediction 0.618337094253726 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247587559 chr1:247587562 nonsynonymous SNV 0.541 3 24 hm5C_associated_SNPs_53279 0 0 0 0 0 Nucleus 0.500233902369781 0.500232731628989 0.75674248 2.34148158506642e-06 hm5C_site_48631 DeepMRMD:0.75674248;iRNA_m5C:2.34148158506642e-06 48632 chr17 7155834 7155834 1 + G T CESC 7155832 + 7155812 7155852 41 ACACTGGGTCATGACGCCATCAGAGGGCGCCAGAGCAGGGA ACACTGGGTCATGACGCCATCATAGGGCGCCAGAGCAGGGA < 41bp 0.831777103082624 0.522637579412663 0.9051442 0.4977892 prediction 0.618279047339922 Functional Loss - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7155832 chr17:7155834 stopgain 0.024 0 23 hm5C_associated_SNPs_53280 0 0 1 0 1 Cytosol 0.500231643921095 0.500231643884607 0.8102884 7.29762916762411e-11 hm5C_site_48632 DeepMRMD:0.8102884;iRNA_m5C:7.29762916762411e-11 48633 chr5 10461347 10461347 1 + G T LUAD 10461344 + 10461324 10461364 41 GCGAGATCCTCACGGACGATCCGGAGGGCGGGCCCGCTCGC GCGAGATCCTCACGGACGATCCGTAGGGCGGGCCCGCTCGC < 41bp 0.891520181993906 0.582384717344706 0.8435466 0.10438007 prediction 0.6182709292984 Functional Loss - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10461344 chr5:10461347 stopgain 0.296 1 24 hm5C_associated_SNPs_53281 0 0 0 0 1 exosome 0.500231643921068 0.500231643921092 0.6870932 0 hm5C_site_48633 DeepMRMD:0.6870932;iRNA_m5C:0 48634 chrX 123480562 123480562 1 + G T LUSC 123480560 + 123480540 123480580 41 CGAGAAGCTCCTGCTTGCCACTGGGCTGGATGGCAGCTATT CGAGAAGCTCCTGCTTGCCACTTGGCTGGATGGCAGCTATT < 41bp 0.818300498145931 0.509173241727249 0.5283144 0.14713085 prediction 0.618254512837363 Functional Loss - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480560 chrX:123480562 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_53282 0 0 0 2 1 exosome 0.500231555883453 0.500231641509503 0.0566287999999999 0 hm5C_site_48634 DeepMRMD:0.0566287999999999;iRNA_m5C:0 48635 chr22 39917987 39917987 1 + G T LGG 39917985 + 39917965 39918005 41 GAACCCAATTGGCCATCTCCCAGAAAGTTTAACAAAACCCG GAACCCAATTGGCCATCTCCCATAAAGTTTAACAAAACCCG < 41bp 0.80912325233167 0.490929233585271 0.15117618 0.023933798 prediction 0.61824650466334 Functional Loss - ATF4 ENSG00000128272 CDS Human protein_coding chr22:39917985 chr22:39917987 stopgain 1.000 0 23 hm5C_associated_SNPs_53283 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48635 DeepMRMD:0;iRNA_m5C:0 48636 chr12 68043620 68043620 1 + G T LUAD 68043617 + 68043597 68043637 41 GTTCGTCAGCTTCAGGCTTCCCCGGGGCTCGGTGCAGGGGC GTTCGTCAGCTTCAGGCTTCCCCTGGGCTCGGTGCAGGGGC < 41bp 0.866215909666166 0.557098642540195 0.42825067 0.07199991 prediction 0.618234534251941 Functional Loss - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68043617 chr12:68043620 synonymous SNV . 0 24 hm5C_associated_SNPs_53284 0 0 1 0 1 Ribosome 0.500231643929129 0.500231643922527 0 1.32045485656818e-11 hm5C_site_48636 DeepMRMD:0;iRNA_m5C:1.32045485656818e-11 48637 chr10 5948185 5948185 1 + G T OV 5948182 + 5948162 5948202 41 GCAGTGCAGGGCCGGGCTCACCAGGGTCTGCCCCGCCCTCC GCAGTGCAGGGCCGGGCTCACCATGGTCTGCCCCGCCCTCC < 41bp 0.889122589727718 0.580010960226297 0.92947614 0.8680292 prediction 0.618223259002843 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5948182 chr10:5948185 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_53285 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643923677 0.12289388 0 hm5C_site_48637 DeepMRMD:0.12289388;iRNA_m5C:0 48638 chr18 2909794 2909794 1 + G T LIHC 2909792 + 2909772 2909812 41 AACAAAGTGCTGGTGAACGACGGGGATGTTTACAACCCCAG AACAAAGTGCTGGTGAACGACGTGGATGTTTACAACCCCAG < 41bp 0.836810551861844 0.527699255692493 0.7528955 0.2573315 prediction 0.618222592338702 Functional Loss - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2909792 chr18:2909794 nonsynonymous SNV 0.509 4 23 hm5C_associated_SNPs_53286 0 0 1 0 1 Ribosome 0.500231643977328 0.500232845392812 0.505791 0 hm5C_site_48638 DeepMRMD:0.505791;iRNA_m5C:0 48639 chr14 77572118 77572118 1 + G T UCEC 77572116 + 77572096 77572136 41 TGCCAAAGTAGGCAAAGGCACAGAGATGAAGAAAGTGGCTC TGCCAAAGTAGGCAAAGGCACATAGATGAAGAAAGTGGCTC < 41bp 0.809087556470855 0.479848121934094 0.6660027 0.20444393 prediction 0.618175112941709 Functional Loss - CIPC ENSG00000198894;ENSG00000259164 CDS Human other chr14:77572116 chr14:77572118 stopgain 0.996 0 23 hm5C_associated_SNPs_53287 0 0 1 0 1 nucleolus 0.500231643921092 0.500231643921092 0.3320054 0 hm5C_site_48639 DeepMRMD:0.3320054;iRNA_m5C:0 48640 chr12 7045930 7045930 1 + G T KIRC 7045928 + 7045908 7045948 41 AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCACGGAAAC AGCAGCAGCAGCAGCAGCAGCATCAGCAGCATCACGGAAAC < 41bp 0.828902593809171 0.519817713784564 0.82914346 0.34676248 prediction 0.618169760049214 Functional Loss - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7045928 chr12:7045930 nonsynonymous SNV 0.077 1 23 hm5C_associated_SNPs_53288 0 0 1 0 0 Endoplasmic reticulum 0.500231641854863 0.500231628312055 0.65828692 2.70856164164002e-08 hm5C_site_48640 DeepMRMD:0.65828692;iRNA_m5C:2.70856164164002e-08 48641 chr17 72368049 72368049 1 + G T LUAD 72368046 + 72368026 72368066 41 GTGCCCCAGGCTGTGGTGCGCACGGCCAACATCCTGGAGTT GTGCCCCAGGCTGTGGTGCGCACTGCCAACATCCTGGAGTT < 41bp 0.888033322876731 0.578950207170056 0.4670704 0.13584727 prediction 0.61816623141335 Functional Loss - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72368046 chr17:72368049 synonymous SNV . 0 24 hm5C_associated_SNPs_53289 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48641 DeepMRMD:0;iRNA_m5C:0 48642 chr12 2929369 2929369 1 + A C STAD 2929365 + 2929345 2929385 41 TGACAGGGCAGCTGGTGTCCCTCAAGAAATGGATGCTGGAG TGACAGGGCAGCTGGTGTCCCTCACGAAATGGATGCTGGAG < 41bp 0.809076547254315 0.389245987256744 0.2023746 0.043607533 prediction 0.618153094508629 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2929365 chr12:2929369 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_53290 0 0 1 1 1 nucleoplasm 0.500231643920727 0.500231462625392 0 3.62590671043606e-07 hm5C_site_48642 DeepMRMD:0;iRNA_m5C:3.62590671043606e-07 48643 chr19 49447646 49447646 1 + G T STAD 49447644 + 49447624 49447664 41 CCTGCTGGTGCCCGACCGAGCTGGTGGTGAAGGGGGAGCAT CCTGCTGGTGCCCGACCGAGCTTGTGGTGAAGGGGGAGCAT < 41bp 0.836584369770612 0.527516495443641 0.76982194 0.38596 prediction 0.618135748653942 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49447644 chr19:49447646 synonymous SNV . 0 23 hm5C_associated_SNPs_53291 0 0 0 0 1 cytosol 0.500231643920835 0.500231643921626 0.53964388 0 hm5C_site_48643 DeepMRMD:0.53964388;iRNA_m5C:0 48644 chr10 99504558 99504558 1 + G T LUAD 99504556 + 99504536 99504576 41 GGCTACCTTCAGGAGGTTTGCCGGGCACGGCTGCCTGATTC GGCTACCTTCAGGAGGTTTGCCTGGCACGGCTGCCTGATTC < 41bp 0.809061969185483 0.491708968787951 0.91836596 0.7417645 prediction 0.618123938370966 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99504556 chr10:99504558 nonsynonymous SNV 0.949 1 23 hm5C_associated_SNPs_53292 0 0 1 0 1 Ribosome 0.500231643921021 0.50023164392541 0.35320292 0 hm5C_site_48644 DeepMRMD:0.35320292;iRNA_m5C:0 48645 chr17 8159678 8159678 1 + G T UCEC 8159676 + 8159656 8159696 41 TTGAGTCCATCATGAGCACCCAGGAATCCTCGAACCCCAAC TTGAGTCCATCATGAGCACCCATGAATCCTCGAACCCCAAC < 41bp 0.809055063420982 0.484161339180724 0.35611832 0.045232207 prediction 0.618110126841964 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8159676 chr17:8159678 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_53293 0 0 1 0 2 Nucleus 0.500231643921309 0.500231640916128 0 6.01036331815408e-09 hm5C_site_48645 DeepMRMD:0;iRNA_m5C:6.01036331815408e-09 48646 chr2 79253870 79253870 1 + A T BLCA 79253866 + 79253846 79253886 41 AACCCAGAAGGAACTGCCCTCTCCACGGATCAGCTGTCCCA AACCCAGAAGGAACTGCCCTCTCCTCGGATCAGCTGTCCCA < 41bp 0.809050343580361 0.498023319273348 0.9432999 0.24066412 prediction 0.618100687160722 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253866 chr2:79253870 synonymous SNV . 0 25 hm5C_associated_SNPs_53294 0 0 0 0 2 unknown 0.500231580578239 0.50023162147556 0.8865998 0 hm5C_site_48646 DeepMRMD:0.8865998;iRNA_m5C:0 48647 chr21 45222344 45222344 1 + G T rs75527225 45222342 + 45222322 45222362 41 CTCCCCTGGATGGGGGTCACCTGCAGTGTCTCCCCCTGAAG CTCCCCTGGATGGGGGTCACCTTCAGTGTCTCCCCCTGAAG < 41bp 0.809031810377903 0.499168100237932 0.8838418 0.4928116 prediction 0.618063620755807 Functional Loss - RRP1 ENSG00000160214 intronic Human protein_coding chr21:45222342 chr21:45222344 . . 0 23 hm5C_associated_SNPs_53295 0 0 1 0 0 Ribosome 0.500232324757954 0.500231662881881 0.7676836 1.32375214589864e-06 hm5C_site_48647 DeepMRMD:0.7676836;iRNA_m5C:1.32375214589864e-06 48648 chr11 94861753 94861753 1 + G T UCEC 94861751 + 94861731 94861771 41 CCCCAATGACTCAGTCCTTCCAGGAACGGTGGTATGTGAAT CCCCAATGACTCAGTCCTTCCATGAACGGTGGTATGTGAAT < 41bp 0.820708818091013 0.5116832960479 0.83995837 0.3301301 prediction 0.618051044086226 Functional Loss - ENDOD1 ENSG00000149218 CDS Human protein_coding chr11:94861751 chr11:94861753 nonsynonymous SNV 0.794 0 23 hm5C_associated_SNPs_53296 0 0 1 0 0 Ribosome 0.500231643515782 0.500231633228162 0.67991674 2.0575239512155e-08 hm5C_site_48648 DeepMRMD:0.67991674;iRNA_m5C:2.0575239512155e-08 48649 chr10 106401240 106401240 1 + G T MESO 106401237 + 106401217 106401257 41 ACGCCCGGCGGCCCCGGCTTCGCGGCCACCGGCGTTGTCTC ACGCCCGGCGGCCCCGGCTTCGCTGCCACCGGCGTTGTCTC < 41bp 0.808995498588594 0.496441724420692 0.6751467 0.22935075 prediction 0.617990997177189 Functional Loss - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106401237 chr10:106401240 nonsynonymous SNV 0.111 0 24 hm5C_associated_SNPs_53297 0 0 0 0 0 exosome 0.500231643921092 0.500231643812141 0.3502934 2.17901918730945e-10 hm5C_site_48649 DeepMRMD:0.3502934;iRNA_m5C:2.17901918730945e-10 48650 chr6 134210757 134210757 1 + G T STAD 134210754 + 134210734 134210774 41 AGCCCCCTGAGCGGGGTCAGCCAGGAGGGGAAGCAGGTCCA AGCCCCCTGAGCGGGGTCAGCCATGAGGGGAAGCAGGTCCA < 41bp 0.808989711838906 0.433980348388257 0.7521559 0.3356072 prediction 0.617979423677811 Functional Loss - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134210754 chr6:134210757 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_53298 0 0 0 0 0 exosome 0.500231643921092 0.500231680675419 0.5043118 0 hm5C_site_48650 DeepMRMD:0.5043118;iRNA_m5C:0 48651 chr1 33957149 33957149 1 + G T HNSC 33957146 + 33957126 33957166 41 AGGCCGTGGCACTTCCCAGGCTCGGGTATAGTGACGCAGAG AGGCCGTGGCACTTCCCAGGCTCTGGTATAGTGACGCAGAG < 41bp 0.808989096174537 0.437828194231052 0.16678739 0.11618623 prediction 0.617978192349073 Functional Loss - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33957146 chr1:33957149 nonsynonymous SNV 0.583 4 24 hm5C_associated_SNPs_53299 0 0 0 0 0 exosome 0.500231643921098 0.500231705519807 0 0 hm5C_site_48651 DeepMRMD:0;iRNA_m5C:0 48652 chr7 143701161 143701161 1 + G T LUAD 143701159 + 143701139 143701179 41 TCCCTGGGAGCTTGAGTATGCGGGCAGCCATGTTTCTGATA TCCCTGGGAGCTTGAGTATGCGTGCAGCCATGTTTCTGATA < 41bp 0.808986252243642 0.496960666963824 0.86506325 0.31988144 prediction 0.617972504487285 Functional Loss - OR6B1 ENSG00000221813 CDS Human protein_coding chr7:143701159 chr7:143701161 synonymous SNV . 0 23 hm5C_associated_SNPs_53300 0 0 0 0 0 unknown 0.500231643921092 0.500231643921094 0.7301265 0 hm5C_site_48652 DeepMRMD:0.7301265;iRNA_m5C:0 48653 chr12 31135592 31135592 1 + G T SARC 31135590 + 31135570 31135610 41 CAGTGGTGGTGCGCTGCGGCCAGCGGGCCCACCCCTCCAAC CAGTGGTGGTGCGCTGCGGCCATCGGGCCCACCCCTCCAAC < 41bp 0.808984464905902 0.468917329467552 0.50841504 0.26602012 prediction 0.617968929811804 Functional Loss - TSPAN11 ENSG00000110900 CDS Human protein_coding chr12:31135590 chr12:31135592 nonsynonymous SNV 0.781 0 23 hm5C_associated_SNPs_53301 0 0 0 0 1 Cytosol 0.500231643540338 0.500231589355701 0.0168300800000001 1.08369273554842e-07 hm5C_site_48653 DeepMRMD:0.0168300800000001;iRNA_m5C:1.08369273554842e-07 48654 chr7 53103529 53103529 1 + G T LUAD 53103527 + 53103507 53103547 41 GTCGCCAGAGTCCCTGGCCCCTGAGGTCCCTGACTCAGAGC GTCGCCAGAGTCCCTGGCCCCTTAGGTCCCTGACTCAGAGC < 41bp 0.808980225314178 0.490322427313054 0.28895336 0.07234043 prediction 0.617960450628357 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103527 chr7:53103529 synonymous SNV . 0 23 hm5C_associated_SNPs_53302 0 0 0 0 0 unknown 0.500231643921059 0.500231643921038 0 4.13002965160558e-14 hm5C_site_48654 DeepMRMD:0;iRNA_m5C:4.13002965160558e-14 48655 chr14 70924354 70924354 1 + G T CESC 70924351 + 70924331 70924371 41 TCCCCGGAAGTGGTGATCCCCTTGAAGGTGATCAGCAGGGG TCCCCGGAAGTGGTGATCCCCTTTAAGGTGATCAGCAGGGG < 41bp 0.868520729279612 0.559554493103984 0.055646926 0.023387045 prediction 0.617932472351258 Functional Loss - ADAM21 ENSG00000139985 CDS Human protein_coding chr14:70924351 chr14:70924354 nonsynonymous SNV 0.768 0 24 hm5C_associated_SNPs_53303 0 0 0 0 0 exosome 0.500231636333594 0.500231643921093 0 0 hm5C_site_48655 DeepMRMD:0;iRNA_m5C:0 48656 chr2 1459997 1459997 1 + G T LUAD 1459994 + 1459974 1460014 41 AGCACCAGCAAAGCTGCCTTCGGGGGAGGGGCTGACTGCCA AGCACCAGCAAAGCTGCCTTCGGTGGAGGGGCTGACTGCCA < 41bp 0.869892696778998 0.560949344470523 0.9268029 0.4169091 prediction 0.61788670461695 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1459994 chr2:1459997 synonymous SNV . 0 24 hm5C_associated_SNPs_53304 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.8536058 0 hm5C_site_48656 DeepMRMD:0.8536058;iRNA_m5C:0 48657 chr3 137483960 137483960 1 + G T LUSC 137483957 + 137483937 137483977 41 CGCTCAAGGCGGCTGGCCTGCCCGTGGGGGCCTCCGACGGC CGCTCAAGGCGGCTGGCCTGCCCTTGGGGGCCTCCGACGGC < 41bp 0.808925990521467 0.444806273230901 0.29280242 0.09183341 prediction 0.617851981042934 Functional Loss - SOX14 ENSG00000168875 CDS Human protein_coding chr3:137483957 chr3:137483960 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53305 0 0 0 0 0 exosome 0.500231643921093 0.500231643921093 0 0 hm5C_site_48657 DeepMRMD:0;iRNA_m5C:0 48658 chr19 56539602 56539602 1 + G T LUAD 56539600 + 56539580 56539620 41 GTGAAGCAGAAGCTTCTGCACTGGGTCTCTCTGTTGGGTCA GTGAAGCAGAAGCTTCTGCACTTGGTCTCTCTGTTGGGTCA < 41bp 0.845206417410905 0.536281287693037 0.37499726 0.084486336 prediction 0.617850259435736 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56539600 chr19:56539602 nonsynonymous SNV 0.032 4 23 hm5C_associated_SNPs_53306 0 0 0 0 0 unknown 0.500231643926329 0.500231643921185 0 1.02886588138063e-11 hm5C_site_48658 DeepMRMD:0;iRNA_m5C:1.02886588138063e-11 48659 chr5 1214107 1214107 1 + G T UCEC 1214105 + 1214085 1214125 41 GCCGGACACCTGGCTGGACGCGGGCGCACAGGTCTTCTTCT GCCGGACACCTGGCTGGACGCGTGCGCACAGGTCTTCTTCT < 41bp 0.855067204629564 0.546162140116443 0.93072724 0.30654502 prediction 0.617810129026242 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214105 chr5:1214107 nonsynonymous SNV 0.262 4 23 hm5C_associated_SNPs_53307 0 0 0 0 2 cytosol 0.500235589740566 0.500232283676375 0.86145448 6.61212838304337e-06 hm5C_site_48659 DeepMRMD:0.86145448;iRNA_m5C:6.61212838304337e-06 48660 chr3 186571004 186571004 1 + C A STAD 186571007 - 186570987 186571027 41 GCCATCTCTGCCATCACGGCCTGGGGCCCCATTATGGCCCG GCCATCTCTGCCATCACGGCCTGTGGCCCCATTATGGCCCG < 41bp 0.875131131772208 0.566226238424963 0.30466846 0.062194765 prediction 0.617809786694491 Functional Loss - ADIPOQ ENSG00000181092 CDS Human protein_coding chr3:186571007 chr3:186571004 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_53308 0 0 0 0 1 exosome 0.500231644201419 0.500231641809058 0 4.78472084175507e-09 hm5C_site_48660 DeepMRMD:0;iRNA_m5C:4.78472084175507e-09 48661 chr10 6262674 6262674 1 + G T LUAD 6262672 + 6262652 6262692 41 GGCCGGAGGTTCCTGGTGAACCGGGTGCAGGACCACATCCA GGCCGGAGGTTCCTGGTGAACCTGGTGCAGGACCACATCCA < 41bp 0.808898992937103 0.480027350304979 0.8759029 0.21386194 prediction 0.617797985874206 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6262672 chr10:6262674 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_53309 0 0 1 0 1 Ribosome 0.500231643999577 0.500231643921093 0.7518058 1.56967550068998e-10 hm5C_site_48661 DeepMRMD:0.7518058;iRNA_m5C:1.56967550068998e-10 48662 chr10 121431869 121431869 1 + G T LUAD 121431866 + 121431846 121431886 41 TGGGCAGTCACCAGCTCCCGCGGGGGTACATCTCCATTCCG TGGGCAGTCACCAGCTCCCGCGGTGGTACATCTCCATTCCG < 41bp 0.892537612093014 0.583640750273847 0.90411466 0.50944483 prediction 0.617793723638335 Functional Loss - BAG3 ENSG00000151929 CDS Human protein_coding chr10:121431866 chr10:121431869 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_53310 0 0 1 0 0 Nucleus 0.500227703208237 0.500231643606524 0.78933966 0 hm5C_site_48662 DeepMRMD:0.78933966;iRNA_m5C:0 48663 chr4 174169303 174169303 1 + G T LUAD 174169300 + 174169280 174169320 41 AAATGAACAAGAGCACCATGCTGGAGGAGATTCCCAGAAAG AAATGAACAAGAGCACCATGCTGTAGGAGATTCCCAGAAAG < 41bp 0.808881962462867 0.470588411126469 0.23285711 0.095746666 prediction 0.617763924925733 Functional Loss - GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174169300 chr4:174169303 nonsynonymous SNV 0.910 0 24 hm5C_associated_SNPs_53311 0 0 1 0 0 chromatin 0.500231643921118 0.500231765885285 0 0 hm5C_site_48663 DeepMRMD:0;iRNA_m5C:0 48664 chr9 93629441 93629441 1 + G T UCEC 93629438 + 93629418 93629458 41 GTCAGCGGGTGGAATAATCTCAAGAATCAAATCATACTCCT GTCAGCGGGTGGAATAATCTCAATAATCAAATCATACTCCT < 41bp 0.869677137980707 0.560796045364369 0.19075462 0.07574463 prediction 0.617762185232676 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93629438 chr9:93629441 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53312 0 0 0 0 3 Cytosol 0.500230988551165 0.500231644542813 0 0 hm5C_site_48664 DeepMRMD:0;iRNA_m5C:0 48665 chr11 64811948 64811948 1 + G T LUAD 64811945 + 64811925 64811965 41 CCAAGGGCCAGACCTTGCCTCTGGGCTTCATGGTCAACCTC CCAAGGGCCAGACCTTGCCTCTGTGCTTCATGGTCAACCTC < 41bp 0.808874703490888 0.437357281153812 0.30185246 0.022486001 prediction 0.617749406981777 Functional Loss - SAC3D1 ENSG00000168061 CDS Human protein_coding chr11:64811945 chr11:64811948 nonsynonymous SNV 0.233 2 24 hm5C_associated_SNPs_53313 0 0 1 0 0 Cytosol 0.500231642773183 0.500231643957459 0 0 hm5C_site_48665 DeepMRMD:0;iRNA_m5C:0 48666 chr11 4661984 4661984 1 + G T LUSC 4661981 + 4661961 4662001 41 GGGTCCTCTGTATGTTCTCACAAGGTGGCAAGTGAGACACC GGGTCCTCTGTATGTTCTCACAATGTGGCAAGTGAGACACC < 41bp 0.808867935866808 0.452184165513659 0.88744974 0.20571736 prediction 0.617735871733617 Functional Loss - OR51D1 ENSG00000197428 CDS Human protein_coding chr11:4661981 chr11:4661984 nonsynonymous SNV 0.018 1 24 hm5C_associated_SNPs_53314 0 0 0 0 0 unknown 0.500231643944978 0.500231643921092 0.77489948 4.77720085712008e-11 hm5C_site_48666 DeepMRMD:0.77489948;iRNA_m5C:4.77720085712008e-11 48667 chr11 4471086 4471086 1 + G T UCEC 4471083 + 4471063 4471103 41 TGAGATGTTTCCACTACTGCCGAGGCCCAGTGATCGCTCAC TGAGATGTTTCCACTACTGCCGATGCCCAGTGATCGCTCAC < 41bp 0.808866833948882 0.433695951298734 0.8834209 0.1371679 prediction 0.617733667897765 Functional Loss - OR52K2 ENSG00000181963 CDS Human protein_coding chr11:4471083 chr11:4471086 nonsynonymous SNV 0.950 3 24 hm5C_associated_SNPs_53315 0 0 0 0 0 exosome 0.500231662353623 0.500231658953446 0.7668418 6.80035250333333e-09 hm5C_site_48667 DeepMRMD:0.7668418;iRNA_m5C:6.80035250333333e-09 48668 chrX 114425401 114425401 1 + G T UCEC 114425399 + 114425379 114425419 41 TCCAGCTGGAGCGACTGCTGCGGAGGAGGAGGCCGTTATGA TCCAGCTGGAGCGACTGCTGCGTAGGAGGAGGCCGTTATGA < 41bp 0.829872639763315 0.521026921555075 0.90773594 0.5419481 prediction 0.61769143641648 Functional Loss - RBMXL3 ENSG00000175718 CDS Human protein_coding chrX:114425399 chrX:114425401 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_53316 0 0 0 0 0 exosome 0.50023164279089 0.500227999187214 0.73157568 7.28720735376776e-06 hm5C_site_48668 DeepMRMD:0.73157568;iRNA_m5C:7.28720735376776e-06 48669 chr19 30934733 30934733 1 + G T LUSC 30934731 + 30934711 30934751 41 TGGCGCTCCTGGCCAACCAGCTGGGCCGGGAGGTGGACACC TGGCGCTCCTGGCCAACCAGCTTGGCCGGGAGGTGGACACC < 41bp 0.846246644891148 0.537413913135658 0.90690535 0.3486182 prediction 0.61766546351098 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934731 chr19:30934733 synonymous SNV . 0 23 hm5C_associated_SNPs_53317 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.8138107 0 hm5C_site_48669 DeepMRMD:0.8138107;iRNA_m5C:0 48670 chr12 2930940 2930940 1 + G T UCEC 2930938 + 2930918 2930958 41 TGGATCACCAGCTCTTTGCCCTGGAGAAACTGGATGTCACC TGGATCACCAGCTCTTTGCCCTTGAGAAACTGGATGTCACC < 41bp 0.829553484024149 0.520731343670003 0.25903648 0.055042446 prediction 0.617644280708293 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930938 chr12:2930940 synonymous SNV . 0 23 hm5C_associated_SNPs_53318 0 0 1 1 2 nucleoplasm 0.500231643912195 0.50023164392109 0 0 hm5C_site_48670 DeepMRMD:0;iRNA_m5C:0 48671 chr19 10398775 10398775 1 + G T SARC 10398772 + 10398752 10398792 41 AGTGCCTAGCTATGAAGTCCCAGGCGTAAAGGGGGATGTTC AGTGCCTAGCTATGAAGTCCCAGTCGTAAAGGGGGATGTTC < 41bp 0.808819354994491 0.439529100253588 0.81974113 0.07489219 prediction 0.617638709988982 Functional Loss - ICAM4 ENSG00000105371 CDS Human protein_coding chr19:10398772 chr19:10398775 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_53319 0 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0.500231643921098 0.63948226 0 hm5C_site_48671 DeepMRMD:0.63948226;iRNA_m5C:0 48672 chr9 90500701 90500701 1 + G T UCEC 90500699 + 90500679 90500719 41 CAACCGTGGGGAACCACTTACAGCAGAAACGCAGCCAGCTT CAACCGTGGGGAACCACTTACATCAGAAACGCAGCCAGCTT < 41bp 0.836236299655528 0.527420984389874 0.647885 0.21071538 prediction 0.61763063053131 Functional Loss - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90500699 chr9:90500701 nonsynonymous SNV 0.010 0 23 hm5C_associated_SNPs_53320 0 0 0 0 0 exosome 0.500231644001144 0.500231668496215 0.29577 0 hm5C_site_48672 DeepMRMD:0.29577;iRNA_m5C:0 48673 chr2 85823723 85823723 1 + G T BLCA 85823720 + 85823700 85823740 41 CACCTGCCTCCACCAGCTGCCAAGACTGTGGTTGAGAACCT CACCTGCCTCCACCAGCTGCCAATACTGTGGTTGAGAACCT < 41bp 0.808814702802538 0.455482625463453 0.25018936 0.17464206 prediction 0.617629405605077 Functional Loss - RNF181 ENSG00000168894 CDS Human protein_coding chr2:85823720 chr2:85823723 nonsynonymous SNV 0.885 4 24 hm5C_associated_SNPs_53321 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48673 DeepMRMD:0;iRNA_m5C:0 48674 chr4 1316262 1316262 1 + G T UCEC 1316259 + 1316239 1316279 41 CCACCTGCCTGGCCTGGTGCCATGACAACAAGTCCCGGCTC CCACCTGCCTGGCCTGGTGCCATTACAACAAGTCCCGGCTC < 41bp 0.808810514703233 0.441926734247798 0.3914647 0.38337165 prediction 0.617621029406465 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1316259 chr4:1316262 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_53322 0 0 1 0 2 Cytosol 0.500231643921096 0.500231641855587 0 4.13101886032052e-09 hm5C_site_48674 DeepMRMD:0;iRNA_m5C:4.13101886032052e-09 48675 chr5 7878172 7878172 1 + G T LIHC 7878170 + 7878150 7878190 41 CGCACTCCCGGTGGCATCACCTGCATCCTCGAGGACAGACC CGCACTCCCGGTGGCATCACCTTCATCCTCGAGGACAGACC < 41bp 0.811723079408023 0.502914065871492 0.37403664 0.1684491 prediction 0.617618027073062 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7878170 chr5:7878172 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_53323 0 0 1 1 0 Nucleus 0.500231646063704 0.500231646399698 0 0 hm5C_site_48675 DeepMRMD:0;iRNA_m5C:0 48676 chr10 127408457 127408457 1 + G T LUAD 127408455 + 127408435 127408475 41 GAGGGCTCAGCCTCCTGTCCCAGGGAGAATCCGAGGAATCT GAGGGCTCAGCCTCCTGTCCCATGGAGAATCCGAGGAATCT < 41bp 0.831001645340937 0.522197701054312 0.89656496 0.10992536 prediction 0.61760788857325 Functional Loss - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127408455 chr10:127408457 nonsynonymous SNV 0.994 1 23 hm5C_associated_SNPs_53324 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643904141 0.79312992 3.39028805029784e-11 hm5C_site_48676 DeepMRMD:0.79312992;iRNA_m5C:3.39028805029784e-11 48677 chr6 7862714 7862714 1 + G T LUAD 7862711 + 7862691 7862731 41 TACCCAGTCCCAGGACGTGGCGCGGGTCTCCAGTGCTTCAG TACCCAGTCCCAGGACGTGGCGCTGGTCTCCAGTGCTTCAG < 41bp 0.879632275951666 0.570836681958222 0.8349453 0.38599434 prediction 0.617591187986889 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862711 chr6:7862714 nonsynonymous SNV 0.549 2 24 hm5C_associated_SNPs_53325 0 0 0 0 1 Ribosome 0.500231643921105 0.500231642769822 0.6698906 2.30256680389118e-09 hm5C_site_48677 DeepMRMD:0.6698906;iRNA_m5C:2.30256680389118e-09 48678 chr19 14040966 14040966 1 + G T STAD 14040964 + 14040944 14040984 41 CGCCTGGGCAACGATGGCAGCAGGGTGAGCTGGTCGCGGGC CGCCTGGGCAACGATGGCAGCATGGTGAGCTGGTCGCGGGC < 41bp 0.824850700036932 0.516057977575708 0.90903866 0.7865709 prediction 0.617585444922447 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040964 chr19:14040966 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_53326 0 0 0 0 1 chromatin 0.500231644624502 0.500231643913489 0.24493552 1.42202694064508e-09 hm5C_site_48678 DeepMRMD:0.24493552;iRNA_m5C:1.42202694064508e-09 48679 chr4 1343540 1343540 1 + G T ESCA 1343538 + 1343518 1343558 41 CCAGGGAGGCGGCACAGAGGCTGAGGCAGGCGACCACCCGG CCAGGGAGGCGGCACAGAGGCTTAGGCAGGCGACCACCCGG < 41bp 0.845187736643687 0.536399041124164 0.90356815 0.81040996 prediction 0.617577391039045 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1343538 chr4:1343540 synonymous SNV . 0 23 hm5C_associated_SNPs_53327 0 0 0 0 0 Nucleus 0.500231644088082 0.500231643921093 0.18631638 3.33976624133925e-10 hm5C_site_48679 DeepMRMD:0.18631638;iRNA_m5C:3.33976624133925e-10 48680 chr1 12919679 12919679 1 + G T rs145302602 12919676 + 12919656 12919696 41 GCAGACAGCAGAGGACTGTCCAAGGACGGGAGAGCACCAGC GCAGACAGCAGAGGACTGTCCAATGACGGGAGAGCACCAGC < 41bp 0.890511899810781 0.581730183363777 0.8822391 0.42797348 prediction 0.617563432894009 Functional Loss - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12919676 chr1:12919679 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_53328 0 0 0 0 0 unknown 0.500231642664807 0.500231662109181 0.7644782 0 hm5C_site_48680 DeepMRMD:0.7644782;iRNA_m5C:0 Multiple continuous traits in DGI samples 48681 chr21 31812774 31812774 1 + G T HNSC 31812772 + 31812752 31812792 41 ATTCTCCAAATACCTGCCAACTGGGCTCCTCTCTCTACAAT ATTCTCCAAATACCTGCCAACTTGGCTCCTCTCTCTACAAT < 41bp 0.81670442944546 0.507925982166158 0.07171881 0.01613009 prediction 0.617556894558604 Functional Loss - KRTAP15-1 ENSG00000186970 CDS Human protein_coding chr21:31812772 chr21:31812774 synonymous SNV . 0 23 hm5C_associated_SNPs_53329 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_48681 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 48682 chr14 24528928 24528928 1 + A C LUAD 24528924 + 24528904 24528944 41 GCCCTGGGCTTCCTGGACATCGCAAGGGCCCTGGAGAGGTG GCCCTGGGCTTCCTGGACATCGCACGGGCCCTGGAGAGGTG < 41bp 0.808763820570359 0.406383267075161 0.39783534 0.21435323 prediction 0.617527641140718 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24528924 chr14:24528928 synonymous SNV . 0 25 hm5C_associated_SNPs_53330 0 0 0 0 2 Endoplasmic reticulum 0.50023164384707 0.500231231063304 0 8.25567531670401e-07 hm5C_site_48682 DeepMRMD:0;iRNA_m5C:8.25567531670401e-07 48683 chr1 186276532 186276532 1 + G T HNSC 186276530 + 186276510 186276550 41 ACCCACCACCACCAAGGAGCCTGCACCCACCACTCCCAAGG ACCCACCACCACCAAGGAGCCTTCACCCACCACTCCCAAGG < 41bp 0.808756692179336 0.479327619758089 0.1081661 0.103940904 prediction 0.617513384358672 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276530 chr1:186276532 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_53331 0 0 0 0 0 nucleoplasm 0.500231643921406 0.500231643921092 0 6.27276008913213e-13 hm5C_site_48683 DeepMRMD:0;iRNA_m5C:6.27276008913213e-13 48684 chr20 43379255 43379255 1 + G T HNSC 43379252 + 43379232 43379272 41 CCAGCGCCGACTGGCCCGAGCGCGCTGCCCGCACCCCCAGC CCAGCGCCGACTGGCCCGAGCGCTCTGCCCGCACCCCCAGC < 41bp 0.808752917311546 0.430841279034348 0.66967857 0.25953948 prediction 0.617505834623092 Functional Loss - KCNK15 ENSG00000124249 CDS Human protein_coding chr20:43379252 chr20:43379255 nonsynonymous SNV 0.109 0 24 hm5C_associated_SNPs_53332 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643922327 0.33935714 0 hm5C_site_48684 DeepMRMD:0.33935714;iRNA_m5C:0 48685 chr3 114014592 114014592 1 + G T HNSC 114014590 + 114014570 114014610 41 CTTCAAGGATCGAGTGGCCCCAGGTCCCGGCCTGGGCCTCA CTTCAAGGATCGAGTGGCCCCATGTCCCGGCCTGGGCCTCA < 41bp 0.850561784446632 0.541815616568785 0.8950719 0.47646502 prediction 0.617492335755695 Functional Loss - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114014590 chr3:114014592 nonsynonymous SNV 0.113 3 23 hm5C_associated_SNPs_53333 0 0 0 0 0 exosome 0.500231643993468 0.500231642926481 0.7901438 2.13397322035291e-09 hm5C_site_48685 DeepMRMD:0.7901438;iRNA_m5C:2.13397322035291e-09 48686 chr1 62676079 62676079 1 + G T UCEC 62676076 + 62676056 62676096 41 AAACAGCTGTGCCCACAAGTCAAGGAACTGGCACACCCTGT AAACAGCTGTGCCCACAAGTCAATGAACTGGCACACCCTGT < 41bp 0.870014150268124 0.561273700672931 0.5040436 0.2260024 prediction 0.617480899190387 Functional Loss - L1TD1 ENSG00000240563 CDS Human protein_coding chr1:62676076 chr1:62676079 stopgain 0.008 0 24 hm5C_associated_SNPs_53334 0 0 0 0 0 Nucleus 0.500231643921051 0.500231643920989 0.00808720000000007 1.24122934153093e-13 hm5C_site_48686 DeepMRMD:0.00808720000000007;iRNA_m5C:1.24122934153093e-13 48687 chr6 158449952 158449952 1 + G T LUSC 158449950 + 158449930 158449970 41 TTTGAAGAAAATCCTCAGCTCGGGGGTGTTCTATTTCTCAT TTTGAAGAAAATCCTCAGCTCGTGGGTGTTCTATTTCTCAT < 41bp 0.81290656146716 0.504172406738272 0.92913014 0.72878635 prediction 0.617468309457776 Functional Loss - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449950 chr6:158449952 nonsynonymous SNV 0.378 4 23 hm5C_associated_SNPs_53335 0 0 1 1 0 Cytosol 0.500231643921092 0.500231643921092 0.40068758 0 hm5C_site_48687 DeepMRMD:0.40068758;iRNA_m5C:0 48688 chr17 78978221 78978221 1 + G T rs370934707 78978219 + 78978199 78978239 41 CCGGCGCGCTCCCCGGGAATCCGCACCCCTGGCCCCAGCGC CCGGCGCGCTCCCCGGGAATCCTCACCCCTGGCCCCAGCGC < 41bp 0.830584576744787 0.521854497792997 0.84513986 0.52573395 prediction 0.617460157903579 Functional Loss - CHMP6;BAIAP2-AS1 ENSG00000175911 CDS Human other chr17:78978219 chr17:78978221 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53336 0 0 0 0 0 unknown 0.500231585426169 0.500231642337803 0.63881182 0 hm5C_site_48688 DeepMRMD:0.63881182;iRNA_m5C:0 48689 chrX 30236765 30236765 1 + G T COAD 30236762 + 30236742 30236782 41 CCGCAAGGCCCGAGATGAGACCCGGGGTCTCAATGTTCCTC CCGCAAGGCCCGAGATGAGACCCTGGGTCTCAATGTTCCTC < 41bp 0.80871042704318 0.444955221087089 0.43374804 0.05910471 prediction 0.617420854086359 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236762 chrX:30236765 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_53337 0 0 0 0 1 exosome 0.500231643921093 0.500231643921091 0 2.66453525910038e-15 hm5C_site_48689 DeepMRMD:0;iRNA_m5C:2.66453525910038e-15 48690 chr15 41104925 41104925 1 + G T UCEC 41104923 + 41104903 41104943 41 CTCTCCAGAATGATCTCAACCAGGGTGGCCCAGGGAGCACT CTCTCCAGAATGATCTCAACCATGGTGGCCCAGGGAGCACT < 41bp 0.83839606252296 0.529688127775265 0.93438554 0.8639619 prediction 0.61741586949539 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41104923 chr15:41104925 nonsynonymous SNV 0.391 1 23 hm5C_associated_SNPs_53338 0 0 1 0 1 Ribosome 0.500231643921192 0.500231560045874 0.14084728 1.67750637158903e-07 hm5C_site_48690 DeepMRMD:0.14084728;iRNA_m5C:1.67750637158903e-07 48691 chr2 160585652 160585652 1 + G T SARC 160585649 + 160585629 160585669 41 TTTAAATGATACCTATCACTCAAGAGACTCTTCATTTAGAT TTTAAATGATACCTATCACTCAATAGACTCTTCATTTAGAT < 41bp 0.808695828988364 0.480235901674563 0.24100208 0.095047235 prediction 0.617391657976728 Functional Loss - MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160585649 chr2:160585652 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_53339 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643922504 0 0 hm5C_site_48691 DeepMRMD:0;iRNA_m5C:0 48692 chr4 71275346 71275346 1 + G T GBM 71275343 + 71275323 71275363 41 TTAGACAACCTCGACTCTTTCCGGGTTATCCAAACCTACAT TTAGACAACCTCGACTCTTTCCGTGTTATCCAAACCTACAT < 41bp 0.808691410553494 0.44249747228307 0.92150444 0.17700821 prediction 0.617382821106989 Functional Loss - OPRPN ENSG00000171199 CDS Human protein_coding chr4:71275343 chr4:71275346 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_53340 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0.84300888 0 hm5C_site_48692 DeepMRMD:0.84300888;iRNA_m5C:0 48693 chr1 193218898 193218898 1 + G T LUSC 193218895 + 193218875 193218915 41 TGAAGTATGATGAAGTTCGTCTGGATCCAAATGTTCAGAAA TGAAGTATGATGAAGTTCGTCTGTATCCAAATGTTCAGAAA < 41bp 0.845966142346104 0.537279595916923 0.2590088 0.08114523 prediction 0.617373092858362 Functional Loss - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193218895 chr1:193218898 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_53341 0 0 1 0 1 Ribosome 0.500073991131694 0.500231643822984 0 0 hm5C_site_48693 DeepMRMD:0;iRNA_m5C:0 LDL cholesterol levels 48694 chr2 219483503 219483503 1 + G T SARC 219483501 + 219483481 219483521 41 CTGTTGGTGGATCTTGTCACCAGCATGGACCATCAGGAGCG CTGTTGGTGGATCTTGTCACCATCATGGACCATCAGGAGCG < 41bp 0.828046231009712 0.519362262718747 0.3892301 0.16542399 prediction 0.61736793658193 Functional Loss - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219483501 chr2:219483503 nonsynonymous SNV 0.946 2 23 hm5C_associated_SNPs_53342 0 0 0 0 0 chromatin 0.500231643900399 0.500233047779598 0 0 hm5C_site_48694 DeepMRMD:0;iRNA_m5C:0 48695 chr19 31038967 31038967 1 + G T COAD 31038964 + 31038944 31038984 41 GAACGGGGCTGGGCCGCTGTCTGGGCAACCCCCAAATCAAG GAACGGGGCTGGGCCGCTGTCTGTGCAACCCCCAAATCAAG < 41bp 0.808675279178357 0.427643864484925 0.84201163 0.13359025 prediction 0.617350558356714 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:31038964 chr19:31038967 nonsynonymous SNV 0.214 2 24 hm5C_associated_SNPs_53343 0 0 1 0 0 exosome 0.500231643921092 0.500231953314413 0.68402326 0 hm5C_site_48695 DeepMRMD:0.68402326;iRNA_m5C:0 48696 chr19 31038966 31038966 1 + G T LIHC 31038964 + 31038944 31038984 41 GAACGGGGCTGGGCCGCTGTCTGGGCAACCCCCAAATCAAG GAACGGGGCTGGGCCGCTGTCTTGGCAACCCCCAAATCAAG < 41bp 0.808675279178357 0.470759727343668 0.84201163 0.14976239 prediction 0.617350558356714 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:31038964 chr19:31038966 nonsynonymous SNV 0.217 4 23 hm5C_associated_SNPs_53344 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0.68402326 0 hm5C_site_48696 DeepMRMD:0.68402326;iRNA_m5C:0 48697 chr17 7948663 7948663 1 + G T SARC 7948661 + 7948641 7948681 41 CCCCAATGACCCTGCTATACCAGAGCCCAGGCTGCGGGCCG CCCCAATGACCCTGCTATACCATAGCCCAGGCTGCGGGCCG < 41bp 0.808671593395229 0.460816828743817 0.9212539 0.36951694 prediction 0.617343186790458 Functional Loss - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7948661 chr17:7948663 nonsynonymous SNV 0.014 2 23 hm5C_associated_SNPs_53345 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.8425078 0 hm5C_site_48697 DeepMRMD:0.8425078;iRNA_m5C:0 48698 chr4 75482021 75482021 1 + G T LUSC 75482018 + 75481998 75482038 41 CCCTGCAGGCCATTATGCTGCTGGATTGGACCTCAATGACA CCCTGCAGGCCATTATGCTGCTGTATTGGACCTCAATGACA < 41bp 0.808655301638166 0.476125565401057 0.3987699 0.10997254 prediction 0.617310603276333 Functional Loss - AREG ENSG00000205595 CDS Human other chr4:75482018 chr4:75482021 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_53346 0 0 0 0 1 Endoplasmic reticulum 0.500191556764446 0.500226446889528 0 0 hm5C_site_48698 DeepMRMD:0;iRNA_m5C:0 48699 chr2 27887266 27887266 1 + G T COAD 27887264 + 27887244 27887284 41 TACCACGCAGTGCTGCAGCACAGGGCGTCCGGCCCTGACGG TACCACGCAGTGCTGCAGCACATGGCGTCCGGCCCTGACGG < 41bp 0.853127168438105 0.544486405173926 0.9049229 0.46955043 prediction 0.617281526528358 Functional Loss - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27887264 chr2:27887266 nonsynonymous SNV 0.876 5 23 hm5C_associated_SNPs_53347 0 0 1 0 0 nucleoplasm 0.500231644840776 0.500231644339928 0.8098458 1.00169694761121e-09 hm5C_site_48699 DeepMRMD:0.8098458;iRNA_m5C:1.00169694761121e-09 48700 chr2 88484990 88484990 1 + G T UCEC 88484988 + 88484968 88485008 41 ATTACCAGCAGATAGACAGGCAGCAGCCCAGGTACAGGCAA ATTACCAGCAGATAGACAGGCATCAGCCCAGGTACAGGCAA < 41bp 0.820938573087914 0.512304348747812 0.3970574 0.33025706 prediction 0.617268448680205 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88484988 chr2:88484990 nonsynonymous SNV 0.887 0 23 hm5C_associated_SNPs_53348 0 0 0 0 1 exosome 0.500231643921082 0.500231643921267 0 0 hm5C_site_48700 DeepMRMD:0;iRNA_m5C:0 48701 chr14 67746119 67746119 1 + G T UCEC 67746116 + 67746096 67746136 41 GAGAGGAAGAAGGGAAAAAGCAAGAACTTGACCTTAATTCT GAGAGGAAGAAGGGAAAAAGCAATAACTTGACCTTAATTCT < 41bp 0.857171629158207 0.548537557389547 0.21354222 0.14687231 prediction 0.61726814353732 Functional Loss - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67746116 chr14:67746119 stopgain 1.000 1 24 hm5C_associated_SNPs_53349 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921093 0 0 hm5C_site_48701 DeepMRMD:0;iRNA_m5C:0 48702 chr1 247588388 247588388 1 + G T LUAD 247588385 + 247588365 247588405 41 GGAAGGAAGGACGAACGTTCCAGGGAGTCGTTTGAAGCTTC GGAAGGAAGGACGAACGTTCCAGTGAGTCGTTTGAAGCTTC < 41bp 0.884486079276795 0.575852772459262 0.8897369 0.2420437 prediction 0.617266613635067 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247588385 chr1:247588388 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_53350 0 0 0 0 0 Nucleus 0.500231643921097 0.50023164358232 0.7794738 6.77552902672574e-10 hm5C_site_48702 DeepMRMD:0.7794738;iRNA_m5C:6.77552902672574e-10 48703 chr1 24078495 24078495 1 + G T UCEC 24078492 + 24078472 24078512 41 AACCAAGTCAGAGAAGCCGGCTGGAGCTGATTTAGCCAAGC AACCAAGTCAGAGAAGCCGGCTGTAGCTGATTTAGCCAAGC < 41bp 0.808625158971548 0.451687988564967 0.5721414 0.2990694 prediction 0.617250317943096 Functional Loss - ELOA ENSG00000011007 CDS Human protein_coding chr1:24078492 chr1:24078495 nonsynonymous SNV 0.790 0 24 hm5C_associated_SNPs_53351 0 0 1 0 1 unknown 0.500231643921092 0.500231643921092 0.1442828 0 hm5C_site_48703 DeepMRMD:0.1442828;iRNA_m5C:0 48704 chr22 45929773 45929773 1 + G T OV 45929771 + 45929751 45929791 41 GAGCTCACAGAGGACAATAGCTGCAAAGGTACAGCATGCGC GAGCTCACAGAGGACAATAGCTTCAAAGGTACAGCATGCGC < 41bp 0.816360394350026 0.507743376060814 0.18205285 0.06842634 prediction 0.617234036578425 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45929771 chr22:45929773 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_53352 0 0 1 0 1 cytosol 0.500231606831812 0.500231643693146 0 0 hm5C_site_48704 DeepMRMD:0;iRNA_m5C:0 48705 chr5 137802882 137802882 1 + G T UCEC 137802879 + 137802859 137802899 41 CCTGCCGCCAAGGGTGGCTTCCAGGTTCCCATGATCCCCGA CCTGCCGCCAAGGGTGGCTTCCATGTTCCCATGATCCCCGA < 41bp 0.808602812777094 0.438554937499265 0.44261295 0.2205917 prediction 0.617205625554187 Functional Loss - EGR1 ENSG00000120738 CDS Human protein_coding chr5:137802879 chr5:137802882 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53353 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921214 0 0 hm5C_site_48705 DeepMRMD:0;iRNA_m5C:0 48706 chr20 23345335 23345335 1 + G T LIHC 23345333 + 23345313 23345353 41 AGGTACAGGTGGAAGAAGATCGGGTGCAGCGAATGCTGGAA AGGTACAGGTGGAAGAAGATCGTGTGCAGCGAATGCTGGAA < 41bp 0.808602614922317 0.489830014274791 0.8380494 0.26238018 prediction 0.617205229844633 Functional Loss - GZF1 ENSG00000125812 CDS Human protein_coding chr20:23345333 chr20:23345335 synonymous SNV . 0 23 hm5C_associated_SNPs_53354 0 0 1 0 0 Cytosol 0.500231058412444 0.500231582052236 0.6760988 0 hm5C_site_48706 DeepMRMD:0.6760988;iRNA_m5C:0 48707 chr12 72091298 72091298 1 + G T COAD 72091295 + 72091275 72091315 41 TCTCCAAGACTGATAACAACCTGGGAGAAAGTTCCAGTTGG TCTCCAAGACTGATAACAACCTGTGAGAAAGTTCCAGTTGG < 41bp 0.863933580251301 0.555332360750293 0.7878636 0.1170381 prediction 0.617202439002016 Functional Loss - TMEM19 ENSG00000139291 CDS Human protein_coding chr12:72091295 chr12:72091298 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53355 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500217672608591 0.5757272 2.79426250024972e-05 hm5C_site_48707 DeepMRMD:0.5757272;iRNA_m5C:2.79426250024972e-05 48708 chr4 154523830 154523830 1 + G T UCEC 154523828 + 154523808 154523848 41 CTTGTGTGCAGACGTGGTTCCAGGACCCAGCTGGGAGGAGT CTTGTGTGCAGACGTGGTTCCATGACCCAGCTGGGAGGAGT < 41bp 0.808600851412296 0.4974961180209 0.46091887 0.2717492 prediction 0.617201702824593 Functional Loss - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154523828 chr4:154523830 stopgain 0.995 1 23 hm5C_associated_SNPs_53356 0 0 0 0 1 Nucleus 0.500231625178861 0.500231644799448 0 0 hm5C_site_48708 DeepMRMD:0;iRNA_m5C:0 48709 chr19 16060239 16060239 1 + A C SKCM 16060235 + 16060215 16060255 41 ACAATGTGCTCATGAGCCCCCGTGACTGTGCCCATCTTGTG ACAATGTGCTCATGAGCCCCCGTGCCTGTGCCCATCTTGTG < 41bp 0.808586882989616 0.452703076285821 0.05883339 0.08973044 prediction 0.617173765979232 Functional Loss - OR10H4 ENSG00000176231 CDS Human protein_coding chr19:16060235 chr19:16060239 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_53357 0 0 0 0 0 unknown 0.50023157639249 0.500231643312134 0 0 hm5C_site_48709 DeepMRMD:0;iRNA_m5C:0 48710 chr16 50741838 50741838 1 + G T STAD 50741835 + 50741815 50741855 41 CCTTCCTTCTACAACATGTTCAGGAATTACCAGTCCCATTG CCTTCCTTCTACAACATGTTCAGTAATTACCAGTCCCATTG < 41bp 0.865526150701331 0.556943046645126 0.89914864 0.2574287 prediction 0.617166208112411 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50741835 chr16:50741838 stopgain 0.007 0 24 hm5C_associated_SNPs_53358 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.79829728 0 hm5C_site_48710 DeepMRMD:0.79829728;iRNA_m5C:0 48711 chr2 231090572 231090572 1 + G T LUAD 231090569 + 231090549 231090589 41 AGGCCAAGCTCATGGCCCAGCAGGGCCAGCAGGGGCAGATG AGGCCAAGCTCATGGCCCAGCAGTGCCAGCAGGGGCAGATG < 41bp 0.871129390634963 0.562547256136717 0.60048383 0.17498532 prediction 0.617164268996492 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231090569 chr2:231090572 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_53359 0 0 0 0 1 exosome 0.500231643921092 0.500231638074363 0.20096766 1.16934582017336e-08 hm5C_site_48711 DeepMRMD:0.20096766;iRNA_m5C:1.16934582017336e-08 48712 chr16 77850906 77850906 1 + G T LAML 77850904 + 77850884 77850924 41 GGTGCCAGGATTTGAGTGTTCTGGGATTGTTGAAGCTCTGG GGTGCCAGGATTTGAGTGTTCTTGGATTGTTGAAGCTCTGG < 41bp 0.808578790898042 0.49374493587533 0.37242937 0.13396344 prediction 0.617157581796083 Functional Loss - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77850904 chr16:77850906 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53360 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_48712 DeepMRMD:0;iRNA_m5C:0 48713 chr2 113674783 113674783 1 + G T SARC 113674781 + 113674761 113674801 41 CAAAGTACTGGTCCTGGACTCTGGGAATCTCATAGCAGTTC CAAAGTACTGGTCCTGGACTCTTGGAATCTCATAGCAGTTC < 41bp 0.808577876961413 0.498479406785803 0.3469732 0.18205065 prediction 0.617155753922825 Functional Loss - IL37 ENSG00000125571 CDS Human protein_coding chr2:113674781 chr2:113674783 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_53361 0 0 1 0 2 exosome 0.500231633765607 0.500231643167204 0 0 hm5C_site_48713 DeepMRMD:0;iRNA_m5C:0 48714 chr18 8783635 8783635 1 + G T UCEC 8783633 + 8783613 8783653 41 GGGAGAAGGACGAGCTGGAGCAGGAGCTCCAGAAGTACAAG GGGAGAAGGACGAGCTGGAGCATGAGCTCCAGAAGTACAAG < 41bp 0.833666145879018 0.525089332618982 0.9108078 0.5772258 prediction 0.617153626520073 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8783633 chr18:8783635 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_53362 0 0 1 0 0 Nucleus 0.500231549520252 0.50023171119816 0.667164 0 hm5C_site_48714 DeepMRMD:0.667164;iRNA_m5C:0 48715 chr4 71024495 71024495 1 + G T SARC 71024493 + 71024473 71024513 41 TGCTGCAGAGGCACCTGTTGCAGCTGAGCCTGCTGCAGAGG TGCTGCAGAGGCACCTGTTGCATCTGAGCCTGCTGCAGAGG < 41bp 0.808574820145046 0.496243090342354 0.8215109 0.21809268 prediction 0.617149640290091 Functional Loss - PRR27 ENSG00000187533 CDS Human protein_coding chr4:71024493 chr4:71024495 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_53363 0 0 0 0 0 unknown 0.500231646707165 0.500231647985968 0.6430218 0 hm5C_site_48715 DeepMRMD:0.6430218;iRNA_m5C:0 48716 chr8 123964290 123964290 1 + G T STAD 123964287 + 123964267 123964307 41 GGTGACAGTGATTCTGGGATCTCGGTGAGTAAAACCCCCAT GGTGACAGTGATTCTGGGATCTCTGTGAGTAAAACCCCCAT < 41bp 0.867204756714318 0.558640034847361 0.82265806 0.72390187 prediction 0.617129443733912 Functional Loss - ZHX2 ENSG00000178764 CDS Human protein_coding chr8:123964287 chr8:123964290 synonymous SNV . 0 24 hm5C_associated_SNPs_53364 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0.19751238 0 hm5C_site_48716 DeepMRMD:0.19751238;iRNA_m5C:0 48717 chr18 29099836 29099836 1 + G T LUAD 29099834 + 29099814 29099854 41 TTAGTGCGGCAAAAGCGCGCCTGGATCACCGCCCCCGTGGC TTAGTGCGGCAAAAGCGCGCCTTGATCACCGCCCCCGTGGC < 41bp 0.830050644474015 0.521491404797331 0.3204605 0.020359606 prediction 0.617118479353369 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29099834 chr18:29099836 nonsynonymous SNV 0.944 3 23 hm5C_associated_SNPs_53365 1 0 1 0 2 Endoplasmic reticulum 0.50023164392184 0.500231643923647 0 0 hm5C_site_48717 DeepMRMD:0;iRNA_m5C:0 not specified not specified 48718 chr10 70748989 70748989 1 + G T THYM 70748987 + 70748967 70749007 41 AGGTACCGGCTCTCGCACGACTGCATCTCTCTCTGCATCCA AGGTACCGGCTCTCGCACGACTTCATCTCTCTCTGCATCCA < 41bp 0.809608141551928 0.501051338049729 0.28037786 0.11985764 prediction 0.617113607004397 Functional Loss - KIF1BP ENSG00000198954 CDS Human protein_coding chr10:70748987 chr10:70748989 nonsynonymous SNV 0.956 1 23 hm5C_associated_SNPs_53366 0 0 1 0 1 chromatin 0.500232209222957 0.500231652776279 0 1.11289335458231e-06 hm5C_site_48718 DeepMRMD:0;iRNA_m5C:1.11289335458231e-06 48719 chr20 20278922 20278922 1 + G T LUSC 20278919 + 20278899 20278939 41 GGAAACCATCACGTGCCTTTCTAGGGAGCCCTTCCCCGCCT GGAAACCATCACGTGCCTTTCTATGGAGCCCTTCCCCGCCT < 41bp 0.808556032424383 0.447324282904906 0.89142406 0.2875406 prediction 0.617112064848766 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20278919 chr20:20278922 nonsynonymous SNV 0.656 1 24 hm5C_associated_SNPs_53367 0 0 0 0 0 nucleus 0.500231643921093 0.500231643921093 0.78284812 0 hm5C_site_48719 DeepMRMD:0.78284812;iRNA_m5C:0 48720 chr17 40721269 40721269 1 + G T SARC 40721267 + 40721247 40721287 41 TCGTCCCCACTTGCCAGCAGCAGGACTTCTCCATTGGCTCC TCGTCCCCACTTGCCAGCAGCATGACTTCTCCATTGGCTCC < 41bp 0.842619026784218 0.534063475587735 0.33707836 0.035582393 prediction 0.617111102392964 Functional Loss - MLX ENSG00000108788 CDS Human protein_coding chr17:40721267 chr17:40721269 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53368 0 0 1 0 1 Ribosome 0.500231643924349 0.500231478787159 0 3.30274379400919e-07 hm5C_site_48720 DeepMRMD:0;iRNA_m5C:3.30274379400919e-07 48721 chr11 10483264 10483264 1 + G T COAD 10483262 + 10483242 10483282 41 TGCAGAAGGAGCTGGCAGAGCAGAAGTCTGTGGAGACCGCA TGCAGAAGGAGCTGGCAGAGCATAAGTCTGTGGAGACCGCA < 41bp 0.827367150354716 0.518823664405298 0.39390305 0.2336238 prediction 0.617086971898835 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10483262 chr11:10483264 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53369 0 0 1 0 1 Cytosol 0.50026668617775 0.500227352018647 0 7.86683182047998e-05 hm5C_site_48721 DeepMRMD:0;iRNA_m5C:7.86683182047998e-05 48722 chr2 74329241 74329241 1 + G T SARC 74329239 + 74329219 74329259 41 ACTGGCTGTGCCCACAGACTCGGCGGTCACCGTGTCCTCCT ACTGGCTGTGCCCACAGACTCGTCGGTCACCGTGTCCTCCT < 41bp 0.813324860631728 0.504781774067151 0.9287944 0.2587602 prediction 0.617086173129153 Functional Loss - TET3 ENSG00000187605 CDS Human protein_coding chr2:74329239 chr2:74329241 nonsynonymous SNV 0.901 0 23 hm5C_associated_SNPs_53370 0 0 1 0 0 Cytosol 0.500231283663131 0.500237786471676 0.8575888 0 hm5C_site_48722 DeepMRMD:0.8575888;iRNA_m5C:0 48723 chr11 124496861 124496861 1 + G T LUSC 124496859 + 124496839 124496879 41 ATCTACCCCGTGGGCTATTGCAGTACTCGAATATATGCCAG ATCTACCCCGTGGGCTATTGCATTACTCGAATATATGCCAG < 41bp 0.808539517226372 0.490691563977557 0.48083478 0.12730855 prediction 0.617079034452744 Functional Loss - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124496859 chr11:124496861 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_53371 0 0 1 0 2 Ribosome 0.500231643920478 0.500231643920137 0 6.81232847909996e-13 hm5C_site_48723 DeepMRMD:0;iRNA_m5C:6.81232847909996e-13 48724 chr3 52236674 52236674 1 + G T SARC 52236672 + 52236652 52236692 41 TCCTGGCAGCACAGATGAATCAGAGAGGCAGCAGTGTCTTC TCCTGGCAGCACAGATGAATCATAGAGGCAGCAGTGTCTTC < 41bp 0.832602631616509 0.524065963731342 0.7610875 0.29316014 prediction 0.617073335770334 Functional Loss - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52236672 chr3:52236674 nonsynonymous SNV 0.917 2 23 hm5C_associated_SNPs_53372 0 0 0 0 0 Cytosol 0.500234691670716 0.500232256284547 0.522175 4.87077233901623e-06 hm5C_site_48724 DeepMRMD:0.522175;iRNA_m5C:4.87077233901623e-06 48725 chr19 50191469 50191469 1 + G T STAD 50191466 + 50191446 50191486 41 GACTTCAAGGGCCAGCTGTGCGAGCTGTCCTGCTCCACCGA GACTTCAAGGGCCAGCTGTGCGATCTGTCCTGCTCCACCGA < 41bp 0.808522381335441 0.429395781298694 0.5027338 0.17756546 prediction 0.617044762670881 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50191466 chr19:50191469 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53373 0 0 1 0 1 Cytosol 0.500231635655596 0.500231601026045 0.00546760000000002 6.92591033413237e-08 hm5C_site_48725 DeepMRMD:0.00546760000000002;iRNA_m5C:6.92591033413237e-08 48726 chr7 98991669 98991669 1 + G T SARC 98991667 + 98991647 98991687 41 TGCAGCCAGATCTCGGTGCTCAGCGGCGGCAAGGCCAAGTG TGCAGCCAGATCTCGGTGCTCATCGGCGGCAAGGCCAAGTG < 41bp 0.835807511432507 0.527289945174322 0.9197858 0.79479635 prediction 0.617035132516371 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98991667 chr7:98991669 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_53374 0 0 0 0 2 Cytosol 0.500231523697587 0.500231606296604 0.2499789 0 hm5C_site_48726 DeepMRMD:0.2499789;iRNA_m5C:0 48727 chr10 13151272 13151272 1 + G T BLCA 13151269 + 13151249 13151289 41 CAGATGAAAGAGCTCCTGACCGAGAACCACCAGCTGAAAGG CAGATGAAAGAGCTCCTGACCGATAACCACCAGCTGAAAGG < 41bp 0.875466225849043 0.566955118073031 0.8998939 0.40457648 prediction 0.617022215552024 Functional Loss - OPTN ENSG00000123240 CDS Human protein_coding chr10:13151269 chr10:13151272 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_53375 0 0 1 0 1 nucleoplasm 0.500231643925554 0.500231643921092 0.7997878 8.92308449351731e-12 hm5C_site_48727 DeepMRMD:0.7997878;iRNA_m5C:8.92308449351731e-12 48728 chr1 223949949 223949949 1 + G T LUAD 223949946 + 223949926 223949966 41 GAGACTGTTTGCCCAGTTGGCAGGAGAGGTAAATGTTCCCA GAGACTGTTTGCCCAGTTGGCAGTAGAGGTAAATGTTCCCA < 41bp 0.875206139549848 0.566697637983684 0.8895416 0.28319776 prediction 0.617017003132328 Functional Loss - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223949946 chr1:223949949 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_53376 0 0 1 0 2 Ribosome 0.500231643526288 0.500231643921092 0.7790832 0 hm5C_site_48728 DeepMRMD:0.7790832;iRNA_m5C:0 48729 chr15 40765115 40765115 1 + A C rs186655194 40765111 + 40765091 40765131 41 GCAGGGTTCTTGCCTGGTAGCTCCAGGACCCAGCTCTGCAG GCAGGGTTCTTGCCTGGTAGCTCCCGGACCCAGCTCTGCAG < 41bp 0.808506966824018 0.462869147943915 0.93741405 0.08949843 prediction 0.617013933648036 Functional Loss - CHST14 ENSG00000169105 UTR3 Human protein_coding chr15:40765111 chr15:40765115 . . 0 25 hm5C_associated_SNPs_53377 0 0 1 1 0 exosome 0.500231643921092 0.500231643828533 0.8748281 1.85119031215208e-10 hm5C_site_48729 DeepMRMD:0.8748281;iRNA_m5C:1.85119031215208e-10 48730 chr9 130430389 130430389 1 + G T LUSC 130430387 + 130430367 130430407 41 CCAGCGGCATCGGGGAGGCACGGGTGAAGGAGGTGCTCCTG CCAGCGGCATCGGGGAGGCACGTGTGAAGGAGGTGCTCCTG < 41bp 0.853468649622618 0.544970652640754 0.91949046 0.6789516 prediction 0.616995993963728 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130430387 chr9:130430389 synonymous SNV . 0 23 hm5C_associated_SNPs_53378 0 0 0 0 2 Cytosol 0.500231643921052 0.500231527721925 0.48107772 2.32398253974253e-07 hm5C_site_48730 DeepMRMD:0.48107772;iRNA_m5C:2.32398253974253e-07 48731 chr2 143798107 143798107 1 + G T UCEC 143798104 + 143798084 143798124 41 GGCAAAGATAAAGCAGCAACCAAGAAACCAGTTGTGAACAT GGCAAAGATAAAGCAGCAACCAATAAACCAGTTGTGAACAT < 41bp 0.848928571285053 0.540439468672404 0.28264028 0.41221994 prediction 0.616978205225298 Functional Loss - KYNU ENSG00000115919 CDS Human protein_coding chr2:143798104 chr2:143798107 nonsynonymous SNV 0.010 1 24 hm5C_associated_SNPs_53379 0 0 0 0 0 Nucleus 0.500231643896809 0.500231643910234 0 0 hm5C_site_48731 DeepMRMD:0;iRNA_m5C:0 48732 chr21 39671648 39671648 1 + G T BRCA 39671645 + 39671625 39671665 41 GCTCAGTTGGTCATCACGACCTTGATTGAGATCTTCATCAC GCTCAGTTGGTCATCACGACCTTTATTGAGATCTTCATCAC < 41bp 0.808487836328954 0.450032504352098 0.018495888 0.02032423 prediction 0.616975672657907 Functional Loss - KCNJ15 ENSG00000157551 CDS Human protein_coding chr21:39671645 chr21:39671648 nonsynonymous SNV 0.962 4 24 hm5C_associated_SNPs_53380 0 0 0 0 0 exosome 0.500231378172122 0.50023164390505 0 0 hm5C_site_48732 DeepMRMD:0;iRNA_m5C:0 48733 chr5 134002578 134002578 1 + G T STAD 134002575 + 134002555 134002595 41 CTTTTCAACCAGGAGCTCCTCATGGGCCCCCTCCAGCTGGA CTTTTCAACCAGGAGCTCCTCATTGGCCCCCTCCAGCTGGA < 41bp 0.808483842293602 0.432340355380428 0.2967729 0.049610138 prediction 0.616967684587204 Functional Loss - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134002575 chr5:134002578 nonsynonymous SNV 0.842 3 24 hm5C_associated_SNPs_53381 0 0 1 0 1 Ribosome 0.500231643416654 0.500231643921112 0 0 hm5C_site_48733 DeepMRMD:0;iRNA_m5C:0 48734 chr19 53958642 53958642 1 + G T LUAD 53958639 + 53958619 53958659 41 ATGCCATCGTAGACTTCATACTGGAGAGAAACCTTACAAAT ATGCCATCGTAGACTTCATACTGTAGAGAAACCTTACAAAT < 41bp 0.808452351413791 0.464775605069644 0.11905819 0.031572014 prediction 0.616904702827582 Functional Loss - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53958639 chr19:53958642 . 0.015 2 24 hm5C_associated_SNPs_53382 0 0 0 0 0 unknown 0.500231643852536 0.500231643325454 0 1.05416364526434e-09 hm5C_site_48734 DeepMRMD:0;iRNA_m5C:1.05416364526434e-09 48735 chr19 49110400 49110400 1 + G T HNSC 49110398 + 49110378 49110418 41 TCACAGGCCACGGGGTCGCCCCGGGCACTGGTCCGGTCATC TCACAGGCCACGGGGTCGCCCCTGGCACTGGTCCGGTCATC < 41bp 0.808450494308829 0.475868194564661 0.8912747 0.4038102 prediction 0.616900988617659 Functional Loss - SPACA4 ENSG00000177202 CDS Human protein_coding chr19:49110398 chr19:49110400 synonymous SNV . 0 23 hm5C_associated_SNPs_53383 0 0 0 0 0 unknown 0.50023164392107 0.500231643913428 0.7825494 1.52842183354096e-11 hm5C_site_48735 DeepMRMD:0.7825494;iRNA_m5C:1.52842183354096e-11 48736 chr8 23429211 23429211 1 + G T ACC 23429209 + 23429189 23429229 41 TCGGGTATGGCCAATGCCTTCCGGACGGTGTACCAGCTCAA TCGGGTATGGCCAATGCCTTCCTGACGGTGTACCAGCTCAA < 41bp 0.808436897074199 0.49430641162032 0.8537886 0.09738645 prediction 0.616873794148398 Functional Loss - SLC25A37 ENSG00000147454 CDS Human protein_coding chr8:23429209 chr8:23429211 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_53384 0 0 1 0 0 Ribosome 0.5002316439209 0.500231643921092 0.7075772 0 hm5C_site_48736 DeepMRMD:0.7075772;iRNA_m5C:0 48737 chr1 213145986 213145986 1 + G T BRCA 213145984 + 213145964 213146004 41 CAGCTTTAAAACCTACTTCTCAGGAAACTACTTTCACCACG CAGCTTTAAAACCTACTTCTCATGAAACTACTTTCACCACG < 41bp 0.808436476892319 0.493094894392289 0.8582622 0.16350731 prediction 0.616872953784639 Functional Loss - VASH2 ENSG00000143494 CDS Human protein_coding chr1:213145984 chr1:213145986 stopgain 1.000 1 23 hm5C_associated_SNPs_53385 0 0 0 3 1 nucleoplasm 0.500231852867256 0.50015594931349 0.7165244 0.000151807107533708 hm5C_site_48737 DeepMRMD:0.7165244;iRNA_m5C:0.000151807107533708 48738 chr22 37273682 37273682 1 + G T UCEC 37273680 + 37273660 37273700 41 TCCCATGCAGGCGGGAGTTCCAGAGAGAGGACATAGCTCTG TCCCATGCAGGCGGGAGTTCCATAGAGAGGACATAGCTCTG < 41bp 0.827456099337705 0.519030613281458 0.84208655 0.10464114 prediction 0.616850972112494 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37273680 chr22:37273682 nonsynonymous SNV 0.980 0 23 hm5C_associated_SNPs_53386 0 0 0 0 1 exosome 0.500231643886671 0.50023164392115 0.6841731 0 hm5C_site_48738 DeepMRMD:0.6841731;iRNA_m5C:0 48739 chr14 90485684 90485684 1 + G T UCEC 90485681 + 90485661 90485701 41 GCAAATCTGTCCAAGGCTGCCTGGGGAGCATTGGAGAAGAA GCAAATCTGTCCAAGGCTGCCTGTGGAGCATTGGAGAAGAA < 41bp 0.808421772915435 0.448796296330619 0.44315603 0.07173842 prediction 0.616843545830869 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90485681 chr14:90485684 nonsynonymous SNV 0.908 5 24 hm5C_associated_SNPs_53387 0 0 0 0 2 chromatin 0.500231638523654 0.500231643921363 0 0 hm5C_site_48739 DeepMRMD:0;iRNA_m5C:0 48740 chr1 25667039 25667039 1 + A C UCEC 25667035 + 25667015 25667055 41 GCATTGACTGGGGGGAAAAGCGCAATACTATTGCTTCCATT GCATTGACTGGGGGGAAAAGCGCACTACTATTGCTTCCATT < 41bp 0.887283340598459 0.578888105493274 0.7738138 0.533071 prediction 0.616790470210371 Functional Loss - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25667035 chr1:25667039 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_53388 0 0 1 0 2 Ribosome 0.500231644192084 0.500231656013102 0.4814856 0 hm5C_site_48740 DeepMRMD:0.4814856;iRNA_m5C:0 48741 chr19 14139093 14139093 1 + G T OV 14139091 + 14139071 14139111 41 CTGTGGCCGGGAGCTGAGGCCCGGGCAGCGCCTTACGGGGT CTGTGGCCGGGAGCTGAGGCCCTGGCAGCGCCTTACGGGGT < 41bp 0.84142162585061 0.533055050139964 0.88076013 0.5794057 prediction 0.616733151421293 Functional Loss - RLN3 ENSG00000171136 CDS Human protein_coding chr19:14139091 chr19:14139093 nonsynonymous SNV 0.021 1 23 hm5C_associated_SNPs_53389 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.60270886 0 hm5C_site_48741 DeepMRMD:0.60270886;iRNA_m5C:0 Intelligence (MTAG) 48742 chr9 114688752 114688752 1 + G T LGG 114688750 + 114688730 114688770 41 TGCCTTACGTAGCAGACAGACAGGGCTTTGCTGCCACCTTA TGCCTTACGTAGCAGACAGACATGGCTTTGCTGCCACCTTA < 41bp 0.813965227866718 0.5056017455073 0.9085876 0.38604558 prediction 0.616726964718836 Functional Loss - UGCG ENSG00000148154 CDS Human protein_coding chr9:114688750 chr9:114688752 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53390 0 0 1 0 2 Ribosome 0.500231643651426 0.500231643922441 0.8171752 0 hm5C_site_48742 DeepMRMD:0.8171752;iRNA_m5C:0 48743 chr10 7839118 7839118 1 + G T SARC 7839115 + 7839095 7839135 41 TGAGAGAGAGCTGAAACCAGCTCGAATATATGGATTGGGAT TGAGAGAGAGCTGAAACCAGCTCTAATATATGGATTGGGAT < 41bp 0.858291363792631 0.549932458575131 0.20061848 0.62135947 prediction 0.616717810435 Functional Loss - ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7839115 chr10:7839118 nonsynonymous SNV 0.517 4 24 hm5C_associated_SNPs_53391 0 0 1 0 1 Ribosome 0.500231643941522 0.50023164392108 0 4.08837408372165e-11 hm5C_site_48743 DeepMRMD:0;iRNA_m5C:4.08837408372165e-11 48744 chr10 89692896 89692896 1 + G T UCEC 89692893 + 89692873 89692913 41 TGCAGCAATTCACTGTAAAGCTGGAAAGGGACGAACTGGTG TGCAGCAATTCACTGTAAAGCTGTAAAGGGACGAACTGGTG < 41bp 0.845189458436964 0.536832497003737 0.108899236 0.06594059 prediction 0.616713922866455 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89692893 chr10:89692896 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_53392 1 0 1 0 0 Ribosome 0.500232175905885 0.500231643920079 0 1.06397161081517e-06 hm5C_site_48744 DeepMRMD:0;iRNA_m5C:1.06397161081517e-06 not provided not provided 48745 chr9 82335188 82335188 1 + G T THYM 82335186 + 82335166 82335206 41 GCAACATCGCTGTGTGGGATCTGCACAACCAGACCTTGGTG GCAACATCGCTGTGTGGGATCTTCACAACCAGACCTTGGTG < 41bp 0.817327504137425 0.5089946878737 0.16632918 0.20878756 prediction 0.61666563252745 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82335186 chr9:82335188 synonymous SNV . 0 23 hm5C_associated_SNPs_53393 0 0 0 0 1 Endoplasmic reticulum 0.500229551551838 0.500231201525959 0 0 hm5C_site_48745 DeepMRMD:0;iRNA_m5C:0 48746 chr3 183777748 183777748 1 + A T THCA 183777744 + 183777724 183777764 41 GGTGGCTTCACTCCCTGCTGCTCCACTGCACCAGCCCAGGG GGTGGCTTCACTCCCTGCTGCTCCTCTGCACCAGCCCAGGG < 41bp 0.8083218793602 0.487536059540273 0.305467 0.08617073 prediction 0.6166437587204 Functional Loss - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183777744 chr3:183777748 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_53394 0 0 0 0 1 exosome 0.500231618142534 0.500231642864803 0 0 hm5C_site_48746 DeepMRMD:0;iRNA_m5C:0 48747 chr12 100593906 100593906 1 + G T rs144866935 100593903 + 100593883 100593923 41 CTGGAGTGTAGTGGAGCCATCTCGGCTCACTGCAACCTCCG CTGGAGTGTAGTGGAGCCATCTCTGCTCACTGCAACCTCCG < 41bp 0.84293187720876 0.534610767030527 0.78359413 0.24648473 prediction 0.616642220356466 Functional Loss - ACTR6 ENSG00000075089 UTR5 Human protein_coding chr12:100593903 chr12:100593906 . . 0 24 hm5C_associated_SNPs_53395 0 0 0 0 0 Ribosome 0.500231643921093 0.500231643921092 0.56718826 8.88178419700125e-16 hm5C_site_48747 DeepMRMD:0.56718826;iRNA_m5C:8.88178419700125e-16 48748 chr8 144103160 144103160 1 + G T LUAD 144103158 + 144103138 144103178 41 AGCGTCACCCTGCTGGGTGCCGGGCTGCTGCTGAGCCTGCT AGCGTCACCCTGCTGGGTGCCGTGCTGCTGCTGAGCCTGCT < 41bp 0.816011386425615 0.507692866920577 0.8861309 0.25129262 prediction 0.616637039010075 Functional Loss - LY6E ENSG00000160932 CDS Human protein_coding chr8:144103158 chr8:144103160 nonsynonymous SNV 0.266 3 23 hm5C_associated_SNPs_53396 0 0 1 0 0 Endoplasmic reticulum 0.500231643921098 0.500231642845283 0.7722618 2.15163042938116e-09 hm5C_site_48748 DeepMRMD:0.7722618;iRNA_m5C:2.15163042938116e-09 48749 chr15 48056121 48056121 1 + G T COAD 48056118 + 48056098 48056138 41 CAGCGGGTCCTGGAGAAACACTGGACTTCATTTCTAAAGGC CAGCGGGTCCTGGAGAAACACTGTACTTCATTTCTAAAGGC < 41bp 0.847347049659896 0.539033604825545 0.8442203 0.2798374 prediction 0.616626889668701 Functional Loss - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48056118 chr15:48056121 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_53397 0 0 0 0 1 Cytosol 0.500231806518824 0.500252566969575 0.6884406 0 hm5C_site_48749 DeepMRMD:0.6884406;iRNA_m5C:0 48750 chr17 48247701 48247701 1 + G T SARC 48247699 + 48247679 48247719 41 TGGCCTATGTCATGTGCTGCCGGCGGGAGGGAAGGTGAATG TGGCCTATGTCATGTGCTGCCGTCGGGAGGGAAGGTGAATG < 41bp 0.808311802416522 0.493146166355009 0.4940098 0.20599273 prediction 0.616623604833044 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48247699 chr17:48247701 synonymous SNV . 0 23 hm5C_associated_SNPs_53398 0 0 0 0 1 Cytosol 0.500231643847602 0.500231615936963 0 5.58212773782429e-08 hm5C_site_48750 DeepMRMD:0;iRNA_m5C:5.58212773782429e-08 48751 chr6 132892004 132892004 1 + G T LUSC 132892002 + 132891982 132892022 41 CGATGGGCTGGAGGAATTATCTGATGCCCTAAACTGTATAG CGATGGGCTGGAGGAATTATCTTATGCCCTAAACTGTATAG < 41bp 0.808292896543014 0.495063822379665 0.37323207 0.0655421 prediction 0.616585793086028 Functional Loss - TAAR6 ENSG00000146383 CDS Human protein_coding chr6:132892002 chr6:132892004 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_53399 0 0 0 0 0 unknown 0.500231643921093 0.500231643921093 0 0 hm5C_site_48751 DeepMRMD:0;iRNA_m5C:0 48752 chr12 9013767 9013767 1 + A C COAD 9013763 + 9013743 9013783 41 AGTCAGGGTCTACGGTGTCTCAAGAATTCGGCCACCTCCAC AGTCAGGGTCTACGGTGTCTCAAGCATTCGGCCACCTCCAC < 41bp 0.882642746168259 0.574357285565746 0.37853354 0.27267778 prediction 0.616570921205025 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9013763 chr12:9013767 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_53400 0 0 0 0 1 exosome 0.500231864122486 0.500233094667241 0 0 hm5C_site_48752 DeepMRMD:0;iRNA_m5C:0 48753 chr17 21081599 21081599 1 + A C rs115536974 21081595 + 21081575 21081615 41 GCTAAACTGGTGCTCTGTGGCCGGAATGGTGGGGCCCTAGA GCTAAACTGGTGCTCTGTGGCCGGCATGGTGGGGCCCTAGA < 41bp 0.892605206639205 0.584334638095074 0.8165546 0.6784701 prediction 0.616541137088262 Functional Loss - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21081595 chr17:21081599 nonsynonymous SNV 0.716 2 25 hm5C_associated_SNPs_53401 0 0 1 0 2 Endoplasmic reticulum 0.500231643921086 0.500231643919317 0.276169 3.53805873487545e-12 hm5C_site_48753 DeepMRMD:0.276169;iRNA_m5C:3.53805873487545e-12 48754 chr11 70049581 70049581 1 + G T STAD 70049578 + 70049558 70049598 41 ACCCCGCCATGGACCCGTTCCTGGTGCTGCTGCACTCGGTG ACCCCGCCATGGACCCGTTCCTGTTGCTGCTGCACTCGGTG < 41bp 0.808263660819819 0.44357319205969 0.81719416 0.32409206 prediction 0.616527321639639 Functional Loss - FADD ENSG00000168040 CDS Human protein_coding chr11:70049578 chr11:70049581 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53402 0 0 1 0 0 Ribosome 0.500231643963364 0.500231643921092 0.63438832 8.45441494590204e-11 hm5C_site_48754 DeepMRMD:0.63438832;iRNA_m5C:8.45441494590204e-11 48755 chr12 104995745 104995745 1 + G T ESCA 104995743 + 104995723 104995763 41 GGAAGGGGTCCCGAAGCCCCCTGCAGGAACTCTACAACCCA GGAAGGGGTCCCGAAGCCCCCTTCAGGAACTCTACAACCCA < 41bp 0.808258203341044 0.499955990344924 0.06725481 0.015154272 prediction 0.616516406682087 Functional Loss - CHST11 ENSG00000171310 CDS Human protein_coding chr12:104995743 chr12:104995745 synonymous SNV . 0 23 hm5C_associated_SNPs_53403 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_48755 DeepMRMD:0;iRNA_m5C:0 48756 chr6 4892238 4892238 1 + G T LUAD 4892235 + 4892215 4892255 41 CACTCGTGATTGGGAAAGACCACGAATCCAAAAACAGCCAG CACTCGTGATTGGGAAAGACCACTAATCCAAAAACAGCCAG < 41bp 0.846861069442559 0.5386252940092 0.39640096 0.6829114 prediction 0.616471550866718 Functional Loss - CDYL ENSG00000153046 CDS Human protein_coding chr6:4892235 chr6:4892238 stopgain 0.996 0 24 hm5C_associated_SNPs_53404 0 0 1 0 0 Cytoplasm 0.500231643872681 0.500231632996767 0 2.17518292267016e-08 hm5C_site_48756 DeepMRMD:0;iRNA_m5C:2.17518292267016e-08 48757 chr9 128094293 128094293 1 + G T LIHC 128094290 + 128094270 128094310 41 ACATCTGATGATACGGATGTCAGGGAGGTCAGTTCCCGCCC ACATCTGATGATACGGATGTCAGTGAGGTCAGTTCCCGCCC < 41bp 0.872002882890065 0.563770011268257 0.9020808 0.40851656 prediction 0.616465743243616 Functional Loss - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128094290 chr9:128094293 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53405 0 0 1 0 2 Nucleus 0.500231643921106 0.500231642450512 0.8041616 2.9411866275808e-09 hm5C_site_48757 DeepMRMD:0.8041616;iRNA_m5C:2.9411866275808e-09 48758 chr2 73450605 73450605 1 + G T UCEC 73450603 + 73450583 73450623 41 ACACTCTGGAGTTGAAGCCTCAGGACCGTGAGCAGCTTGAC ACACTCTGGAGTTGAAGCCTCATGACCGTGAGCAGCTTGAC < 41bp 0.832081080229509 0.523850275524626 0.603546 0.08792734 prediction 0.616461609409765 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73450603 chr2:73450605 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_53406 0 0 1 3 2 Ribosome 0.500231643921073 0.500231643919691 0.207092 2.76512146513141e-12 hm5C_site_48758 DeepMRMD:0.207092;iRNA_m5C:2.76512146513141e-12 48759 chr3 111394115 111394115 1 + G T UCEC 111394113 + 111394093 111394133 41 ATGCTAGCAGTTAGGAAGGCCAGGAGGAAACTCAGGATGGG ATGCTAGCAGTTAGGAAGGCCATGAGGAAACTCAGGATGGG < 41bp 0.818137473841409 0.509908755459159 0.8372552 0.34626877 prediction 0.616457436764499 Functional Loss - PLCXD2 ENSG00000240891 CDS Human protein_coding chr3:111394113 chr3:111394115 nonsynonymous SNV 0.988 1 23 hm5C_associated_SNPs_53407 0 0 0 0 0 membrane 0.500231643921092 0.500231643921092 0.6745104 0 hm5C_site_48759 DeepMRMD:0.6745104;iRNA_m5C:0 48760 chr15 23261815 23261815 1 + G T UCEC 23261813 + 23261793 23261833 41 TGCCCTCTGAGGTGGAGCTGCAGCACCTGAGGAAGGAACTA TGCCCTCTGAGGTGGAGCTGCATCACCTGAGGAAGGAACTA < 41bp 0.8082256565895 0.476756868127966 0.50530726 0.15034032 prediction 0.616451313178999 Functional Loss - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261813 chr15:23261815 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53408 0 0 0 0 1 unknown 0.500235572843975 0.500232471220731 0.0106145200000001 6.20324648914483e-06 hm5C_site_48760 DeepMRMD:0.0106145200000001;iRNA_m5C:6.20324648914483e-06 48761 chr5 78586049 78586049 1 + G T UCEC 78586046 + 78586026 78586066 41 ACATGGCTGTACTGTCTATTCAAGATCTTACTGTCAAGTAC ACATGGCTGTACTGTCTATTCAATATCTTACTGTCAAGTAC < 41bp 0.808223133934917 0.447357963584656 0.16596508 0.05903235 prediction 0.616446267869834 Functional Loss - JMY ENSG00000152409 CDS Human protein_coding chr5:78586046 chr5:78586049 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_53409 0 0 1 0 1 Endoplasmic reticulum 0.500231643722427 0.500230567590763 0 2.15226332667129e-06 hm5C_site_48761 DeepMRMD:0;iRNA_m5C:2.15226332667129e-06 48762 chr12 57850274 57850274 1 + G T LUAD 57850271 + 57850251 57850291 41 GCCAATGAGCCTGGAGCAGGCCGGGCCAGGAGGAGGACCCC GCCAATGAGCCTGGAGCAGGCCGTGCCAGGAGGAGGACCCC < 41bp 0.808215921565309 0.434652168445596 0.83066756 0.33892226 prediction 0.616431843130619 Functional Loss - INHBE ENSG00000139269 CDS Human protein_coding chr12:57850271 chr12:57850274 synonymous SNV . 0 24 hm5C_associated_SNPs_53410 0 0 1 0 0 Nucleus 0.500231643920864 0.500231643913096 0.66133512 1.55371271404192e-11 hm5C_site_48762 DeepMRMD:0.66133512;iRNA_m5C:1.55371271404192e-11 48763 chr11 71846779 71846779 1 + G T rs372968962 71846776 + 71846756 71846796 41 GAGCAAGCTGGTGTCAGAGCCTGGACCTACAGCGCTGTTGG GAGCAAGCTGGTGTCAGAGCCTGTACCTACAGCGCTGTTGG < 41bp 0.808212959993983 0.479488171117959 0.6574216 0.09193355 prediction 0.616425919987966 Functional Loss - FOLR3 ENSG00000110203 UTR5 Human protein_coding chr11:71846776 chr11:71846779 . . 0 24 hm5C_associated_SNPs_53411 0 0 0 0 1 Endoplasmic reticulum 0.500233940000299 0.500231643938288 0.3148432 4.59212402237341e-06 hm5C_site_48763 DeepMRMD:0.3148432;iRNA_m5C:4.59212402237341e-06 48764 chr4 184931510 184931510 1 + G T ESCA 184931507 + 184931487 184931527 41 GCCCTCTGGGTGCTTCTTCTCTAGGGACGCCGGAAGACCTT GCCCTCTGGGTGCTTCTTCTCTATGGACGCCGGAAGACCTT < 41bp 0.808210816634899 0.434149918173628 0.9294826 0.41301885 prediction 0.616421633269799 Functional Loss - STOX2 ENSG00000173320 CDS Human protein_coding chr4:184931507 chr4:184931510 nonsynonymous SNV 0.731 4 24 hm5C_associated_SNPs_53412 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0.8589652 0 hm5C_site_48764 DeepMRMD:0.8589652;iRNA_m5C:0 48765 chr19 54080530 54080530 1 + G T UCEC 54080527 + 54080507 54080547 41 TCAGCACCAGAGATTCCACACTGGGGAGAAAGACTACGAAT TCAGCACCAGAGATTCCACACTGTGGAGAAAGACTACGAAT < 41bp 0.808204885382597 0.44334645236222 0.6540259 0.2369754 prediction 0.616409770765193 Functional Loss - ZNF331 ENSG00000130844 CDS Human protein_coding chr19:54080527 chr19:54080530 nonsynonymous SNV 0.697 3 24 hm5C_associated_SNPs_53413 0 0 1 0 0 Nucleus 0.500231642465977 0.50023202076944 0.3080518 0 hm5C_site_48765 DeepMRMD:0.3080518;iRNA_m5C:0 48766 chr17 39240729 39240729 1 + A C rs200532954 39240725 + 39240705 39240745 41 AGCTGCTGCCGCCCCAGCTGCTGTATGTCCAGCTGCTGCAA AGCTGCTGCCGCCCCAGCTGCTGTCTGTCCAGCTGCTGCAA < 41bp 0.808200295193625 0.432947062475946 0.7861813 0.18260032 prediction 0.61640059038725 Functional Loss - KRTAP4-7 ENSG00000240871 CDS Human protein_coding chr17:39240725 chr17:39240729 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_53414 0 0 0 0 0 unknown 0.500232125183368 0.500231643912789 0.5723626 9.62541158333607e-07 hm5C_site_48766 DeepMRMD:0.5723626;iRNA_m5C:9.62541158333607e-07 48767 chr20 2321189 2321189 1 + G T LIHC 2321187 + 2321167 2321207 41 CTTCTCCTGCAACAAGTTCCCTGCAATCAAGGCCATGTTGT CTTCTCCTGCAACAAGTTCCCTTCAATCAAGGCCATGTTGT < 41bp 0.808541909041609 0.500362779903014 0.016997337 0.13024506 prediction 0.616358258277191 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2321187 chr20:2321189 nonsynonymous SNV 0.967 2 23 hm5C_associated_SNPs_53415 0 0 0 0 0 exosome 0.500231689459027 0.500231651291574 0 7.63349059518248e-08 hm5C_site_48767 DeepMRMD:0;iRNA_m5C:7.63349059518248e-08 48768 chr19 39423175 39423175 1 + G T rs35977895 39423173 + 39423153 39423193 41 ATCGCAAGTGCTGTCGAGTGCGGCTCAGCACTGGCCGCGAG ATCGCAAGTGCTGTCGAGTGCGTCTCAGCACTGGCCGCGAG < 41bp 0.814628132764765 0.506457965051632 0.23434141 0.038938254 prediction 0.616340335426265 Functional Loss - MRPS12 ENSG00000128626 CDS Human protein_coding chr19:39423173 chr19:39423175 synonymous SNV . 0 23 hm5C_associated_SNPs_53416 0 0 1 0 0 Ribosome 0.500230459775013 0.500238651345451 0 0 hm5C_site_48768 DeepMRMD:0;iRNA_m5C:0 48769 chr15 38591588 38591588 1 + G T LUAD 38591585 + 38591565 38591605 41 CTATTTTAGTAATAGTTATGCACGAGTGCGAGCTGTGGTGA CTATTTTAGTAATAGTTATGCACTAGTGCGAGCTGTGGTGA < 41bp 0.808163732219891 0.46364249610013 0.15850607 0.06845629 prediction 0.616327464439783 Functional Loss - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38591585 chr15:38591588 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53417 0 0 1 0 1 Ribosome 0.50023414494737 0.500225293913965 0 1.77020668092887e-05 hm5C_site_48769 DeepMRMD:0;iRNA_m5C:1.77020668092887e-05 48770 chr13 113803701 113803701 1 + A C COAD 113803697 + 113803677 113803717 41 GCTGGGGAGAGGGCTGTGCCCGTAAGGGGAAGTACGGGATC GCTGGGGAGAGGGCTGTGCCCGTACGGGGAAGTACGGGATC < 41bp 0.884368865613754 0.576217277393294 0.34390146 0.23528233 prediction 0.61630317644092 Functional Loss - F10 ENSG00000126218 CDS Human protein_coding chr13:113803697 chr13:113803701 nonsynonymous SNV 0.790 3 25 hm5C_associated_SNPs_53418 0 0 1 0 0 nucleus 0.500231643921089 0.500231643921092 0 0 hm5C_site_48770 DeepMRMD:0;iRNA_m5C:0 48771 chr7 148311163 148311163 1 + G T LUAD 148311161 + 148311141 148311181 41 ACCCACACCAAAACATGAACCGGGGGATGGAATTTATTGCT ACCCACACCAAAACATGAACCGTGGGATGGAATTTATTGCT < 41bp 0.831539740319114 0.523388350318495 0.91800964 0.265343 prediction 0.616302780001238 Functional Loss - C7orf33 ENSG00000170279 CDS Human protein_coding chr7:148311161 chr7:148311163 synonymous SNV . 0 23 hm5C_associated_SNPs_53419 0 0 0 0 1 unknown 0.500232373697797 0.500235770411042 0.83601928 0 hm5C_site_48771 DeepMRMD:0.83601928;iRNA_m5C:0 48772 chr17 76083026 76083026 1 + A C LUSC 76083022 + 76083002 76083042 41 GCTCGTGAAGCAGCCACCACCGCCACCGCCCCCGCCGCACC GCTCGTGAAGCAGCCACCACCGCCCCCGCCCCCGCCGCACC < 41bp 0.808145747291287 0.398192893115738 0.75513667 0.57034945 prediction 0.616291494582574 Functional Loss - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76083022 chr17:76083026 synonymous SNV . 0 25 hm5C_associated_SNPs_53420 0 0 0 0 1 chromatin 0.500231643920144 0.500218192398071 0.36957444 2.6903044144877e-05 hm5C_site_48772 DeepMRMD:0.36957444;iRNA_m5C:2.6903044144877e-05 48773 chr17 6920612 6920612 1 + C A PAAD 6920614 - 6920594 6920634 41 GGAGAGGAGAGGAGGATCAGCAGAGGTCATGAGAAGGCCAG GGAGAGGAGAGGAGGATCAGCATAGGTCATGAGAAGGCCAG < 41bp 0.843303055264133 0.535163010958001 0.9021071 0.7556037 prediction 0.616280088612264 Functional Loss - C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6920614 chr17:6920612 nonsynonymous SNV 0.971 1 23 hm5C_associated_SNPs_53421 0 0 0 0 1 nucleus 0.500231643920718 0.500231643923103 0.2930068 0 hm5C_site_48773 DeepMRMD:0.2930068;iRNA_m5C:0 48774 chr10 104160088 104160088 1 + G T STAD 104160086 + 104160066 104160106 41 AGACGAGTGTGGTGAGCTTTCTGCTGCGGGTAGGTGCAGAC AGACGAGTGTGGTGAGCTTTCTTCTGCGGGTAGGTGCAGAC < 41bp 0.818834655710506 0.510703994212886 0.58099437 0.47660756 prediction 0.616261322995241 Functional Loss - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160086 chr10:104160088 synonymous SNV . 0 23 hm5C_associated_SNPs_53422 0 0 1 0 1 chromatin 0.500231643921094 0.500231643921093 0.16198874 3.33066907387547e-15 hm5C_site_48774 DeepMRMD:0.16198874;iRNA_m5C:3.33066907387547e-15 48775 chr16 67914984 67914984 1 + G T UCEC 67914982 + 67914962 67915002 41 TTGGCCTGTCCTCCCAGCCCCAGGAATGGCCTTCAGGAAAA TTGGCCTGTCCTCCCAGCCCCATGAATGGCCTTCAGGAAAA < 41bp 0.830398782983516 0.522279000526585 0.8694807 0.14879155 prediction 0.616239564913862 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914982 chr16:67914984 nonsynonymous SNV 0.964 4 23 hm5C_associated_SNPs_53423 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.7389614 0 hm5C_site_48775 DeepMRMD:0.7389614;iRNA_m5C:0 48776 chrX 101911867 101911867 1 + G T LUAD 101911864 + 101911844 101911884 41 AGTGGGGTCCTGGTTCTGGGCAGGAGATGAGGCCCATTTTG AGTGGGGTCCTGGTTCTGGGCAGTAGATGAGGCCCATTTTG < 41bp 0.882023106351811 0.573910432299526 0.8558867 0.2799597 prediction 0.616225348104571 Functional Loss - GPRASP1 ENSG00000198932 CDS Human protein_coding chrX:101911864 chrX:101911867 nonsynonymous SNV 0.992 3 24 hm5C_associated_SNPs_53424 0 0 0 0 0 Cytosol 0.500231643921087 0.500231646060219 0.7117734 0 hm5C_site_48776 DeepMRMD:0.7117734;iRNA_m5C:0 48777 chr11 60689262 60689262 1 + G T UCEC 60689260 + 60689240 60689280 41 TTCCAGGTGATTACCTCGCCCAGGGCCTGAAGCTCAGCCCT TTCCAGGTGATTACCTCGCCCATGGCCTGAAGCTCAGCCCT < 41bp 0.84005464520344 0.531947257740078 0.9089128 0.5535193 prediction 0.616214774926723 Functional Loss - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60689260 chr11:60689262 nonsynonymous SNV 0.964 0 23 hm5C_associated_SNPs_53425 0 0 1 0 1 Ribosome 0.500231643921167 0.500231643921094 0.710787 1.46771483855446e-13 hm5C_site_48777 DeepMRMD:0.710787;iRNA_m5C:1.46771483855446e-13 48778 chr14 60976162 60976162 1 + G T ESCA 60976160 + 60976140 60976180 41 TTTCAGCCCCCAGCAAGTGGCCGGGGTATGTGAGACCCTGG TTTCAGCCCCCAGCAAGTGGCCTGGGTATGTGAGACCCTGG < 41bp 0.808103924050864 0.471396839514875 0.8351854 0.0992389 prediction 0.616207848101727 Functional Loss - SIX6 ENSG00000184302 CDS Human protein_coding chr14:60976160 chr14:60976162 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_53426 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.6703708 0 hm5C_site_48778 DeepMRMD:0.6703708;iRNA_m5C:0 48779 chr3 10242074 10242074 1 + G T LUAD 10242072 + 10242052 10242092 41 GGGAAACCGGCTCCTGAAATCAGGTGTCCCATTCCAGCCTT GGGAAACCGGCTCCTGAAATCATGTGTCCCATTCCAGCCTT < 41bp 0.837129729932848 0.529026356499676 0.9418794 0.8213857 prediction 0.616206746866344 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10242072 chr3:10242074 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_53427 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0.2409874 0 hm5C_site_48779 DeepMRMD:0.2409874;iRNA_m5C:0 48780 chr15 92663743 92663743 1 + G T ESCA 92663741 + 92663721 92663761 41 CTCTCAAACCCTGTGTTCACCTGCATCATCCTGGCCGCCTG CTCTCAAACCCTGTGTTCACCTTCATCATCCTGGCCGCCTG < 41bp 0.808101089427706 0.493327224255756 0.261218 0.09803522 prediction 0.616202178855412 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92663741 chr15:92663743 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53428 0 0 1 1 1 Nucleus 0.500231638195224 0.50023164248263 0 0 hm5C_site_48780 DeepMRMD:0;iRNA_m5C:0 48781 chr7 142566479 142566479 1 + G T UCEC 142566477 + 142566457 142566497 41 AGTTCATGGAGCTTGGCCCCCTGGACAGCTTCCTCAGGGTC AGTTCATGGAGCTTGGCCCCCTTGACAGCTTCCTCAGGGTC < 41bp 0.808098547191742 0.49353516664705 0.51851547 0.15468317 prediction 0.616197094383485 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566477 chr7:142566479 synonymous SNV . 0 23 hm5C_associated_SNPs_53429 0 0 0 0 0 Endoplasmic reticulum 0.500231643922307 0.500231644127839 0.03703094 0 hm5C_site_48781 DeepMRMD:0.03703094;iRNA_m5C:0 48782 chr10 135165921 135165921 1 + G T UCEC 135165918 + 135165898 135165938 41 TCCTGGGACCGGAGGAAGACCAAGACCACATCTACCACCCC TCCTGGGACCGGAGGAAGACCAATACCACATCTACCACCCC < 41bp 0.875871085152186 0.56777517465872 0.8887929 0.88088024 prediction 0.616191820986932 Functional Loss - PRAP1 ENSG00000165828;ENSG00000198546 CDS Human other chr10:135165918 chr10:135165921 nonsynonymous SNV 0.217 3 24 hm5C_associated_SNPs_53430 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921093 0.01582532 0 hm5C_site_48782 DeepMRMD:0.01582532;iRNA_m5C:0 48783 chr1 33746058 33746058 1 + G T UCEC 33746056 + 33746036 33746076 41 GCCAAGGAGGGCAAGACGTACAGGTGGGGGTCTTGGCGGGA GCCAAGGAGGGCAAGACGTACATGTGGGGGTCTTGGCGGGA < 41bp 0.808092060363642 0.491137660549478 0.85481834 0.47638795 prediction 0.616184120727284 Functional Loss - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33746056 chr1:33746058 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53431 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921204 0.70963668 0 hm5C_site_48783 DeepMRMD:0.70963668;iRNA_m5C:0 48784 chr17 77043799 77043799 1 + A C OV 77043795 + 77043775 77043815 41 GGCCGGAAGAAGCCCATGCACAGCAACCACTACTACCAGAC GGCCGGAAGAAGCCCATGCACAGCCACCACTACTACCAGAC < 41bp 0.808075983397492 0.410421550545635 0.25801295 0.1934956 prediction 0.616151966794984 Functional Loss - C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77043795 chr17:77043799 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_53432 0 0 0 0 0 exosome 0.500231643921092 0.500231643921075 0 3.5527136788005e-14 hm5C_site_48784 DeepMRMD:0;iRNA_m5C:3.5527136788005e-14 48785 chr1 21889729 21889729 1 + A T LUAD 21889725 + 21889705 21889745 41 ACTGAGCGTTCCCGGTGCAACACCACCCAGGGGAACGAGGT ACTGAGCGTTCCCGGTGCAACACCTCCCAGGGGAACGAGGT < 41bp 0.818223265283186 0.51014845887567 0.4128352 0.35672987 prediction 0.616149612815033 Functional Loss - ALPL ENSG00000162551 CDS Human protein_coding chr1:21889725 chr1:21889729 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_53433 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_48785 DeepMRMD:0;iRNA_m5C:0 48786 chr15 73852150 73852150 1 + G T UVM 73852148 + 73852128 73852168 41 TGAACAATCTGCATGGGGTGCAGAAGAGTTAGGCCCCTTCC TGAACAATCTGCATGGGGTGCATAAGAGTTAGGCCCCTTCC < 41bp 0.832299350818895 0.524234935899366 0.23908538 0.031107903 prediction 0.616128829839059 Functional Loss - REC114 ENSG00000183324 CDS Human protein_coding chr15:73852148 chr15:73852150 stopgain 0.112 0 23 hm5C_associated_SNPs_53434 0 0 0 0 1 Cytosol 0.500231643921112 0.500231643921092 0 3.95239396766556e-14 hm5C_site_48786 DeepMRMD:0;iRNA_m5C:3.95239396766556e-14 48787 chrX 65392314 65392314 1 + G T LUSC 65392311 + 65392291 65392331 41 GATGAAGTGGCCCAGCCTGCCTGGTTGGGCTTCCTGGGGCC GATGAAGTGGCCCAGCCTGCCTGTTTGGGCTTCCTGGGGCC < 41bp 0.808027825454258 0.430023351632663 0.20921445 0.060056716 prediction 0.616055650908516 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65392311 chrX:65392314 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53435 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643926969 0 0 hm5C_site_48787 DeepMRMD:0;iRNA_m5C:0 48788 chr6 116949247 116949247 1 + G T COAD 116949244 + 116949224 116949264 41 ATTGTTATTGCAAGAAAAATCAAGAAATTTTTCACTGGGCG ATTGTTATTGCAAGAAAAATCAATAAATTTTTCACTGGGCG < 41bp 0.808013871465657 0.444663731181031 0.84843314 0.8043138 prediction 0.616027742931313 Functional Loss - RSPH4A ENSG00000111834 CDS Human protein_coding chr6:116949244 chr6:116949247 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53436 0 0 0 0 0 exosome 0.500330630518816 0.500231643873466 0.0882386800000001 0.000197973290700482 hm5C_site_48788 DeepMRMD:0.0882386800000001;iRNA_m5C:0.000197973290700482 48789 chr11 3647769 3647769 1 + A C rs573886587 3647765 + 3647745 3647785 41 GGCTTGCCCCCATGCACTGCCGGGACGCCTCCCAAGCGGCT GGCTTGCCCCCATGCACTGCCGGGCCGCCTCCCAAGCGGCT < 41bp 0.808011191915833 0.475844608414126 0.8036766 0.42188436 prediction 0.616022383831666 Functional Loss - TRPC2 ENSG00000182048 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3647765 chr11:3647769 . . 0 25 hm5C_associated_SNPs_53437 0 0 0 0 1 unknown 0.500231643999719 0.500231643912135 0.6073532 1.75166992022469e-10 hm5C_site_48789 DeepMRMD:0.6073532;iRNA_m5C:1.75166992022469e-10 48790 chr7 141478657 141478657 1 + G T LUAD 141478655 + 141478635 141478675 41 CAGTGTTTCTCCTGCTGAAGCGGAATATCTCCCCAAAGATC CAGTGTTTCTCCTGCTGAAGCGTAATATCTCCCCAAAGATC < 41bp 0.80800497493303 0.498452000000929 0.7236756 0.083599 prediction 0.616009949866059 Functional Loss - TAS2R4 ENSG00000127364 CDS Human protein_coding chr7:141478655 chr7:141478657 synonymous SNV . 0 23 hm5C_associated_SNPs_53438 0 0 1 0 0 nucleoplasm 0.500231643932746 0.500231651408154 0.4473512 0 hm5C_site_48790 DeepMRMD:0.4473512;iRNA_m5C:0 48791 chrX 41333624 41333624 1 + G T LUSC 41333621 + 41333601 41333641 41 CAGAACCTCTCGGGTCTCCTCGCGCTGCACCTCAACGGCAA CAGAACCTCTCGGGTCTCCTCGCTCTGCACCTCAACGGCAA < 41bp 0.808001395772584 0.42842120565358 0.7878835 0.29302055 prediction 0.616002791545168 Functional Loss - NYX ENSG00000188937 CDS Human protein_coding chrX:41333621 chrX:41333624 synonymous SNV . 0 24 hm5C_associated_SNPs_53439 0 0 0 0 0 unknown 0.500231644058521 0.500231643922861 0.575767 2.7131874524855e-10 hm5C_site_48791 DeepMRMD:0.575767;iRNA_m5C:2.7131874524855e-10 48792 chr11 70189796 70189796 1 + G T SARC 70189793 + 70189773 70189813 41 AGGTACAAACTCTTAATGAGCAGGATTGGGAACGTGCCCAG AGGTACAAACTCTTAATGAGCAGTATTGGGAACGTGCCCAG < 41bp 0.86903534306699 0.561051126562611 0.7218791 0.2847457 prediction 0.615968433008758 Functional Loss - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70189793 chr11:70189796 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_53440 0 0 1 0 1 Ribosome 0.500231643901961 0.500231643924335 0.4437582 0 hm5C_site_48792 DeepMRMD:0.4437582;iRNA_m5C:0 48793 chr19 58579321 58579321 1 + G T LUAD 58579318 + 58579298 58579338 41 CCAACACCAGCGAATCCACACAGGGGAGAAGCCCTATGAAT CCAACACCAGCGAATCCACACAGTGGAGAAGCCCTATGAAT < 41bp 0.807963125056026 0.424494365612469 0.8780384 0.35119855 prediction 0.615926250112052 Functional Loss - ZNF135 ENSG00000176293 CDS Human protein_coding chr19:58579318 chr19:58579321 nonsynonymous SNV 0.470 3 24 hm5C_associated_SNPs_53441 0 0 0 0 0 exosome 0.500231643921092 0.500231643924431 0.7560768 0 hm5C_site_48793 DeepMRMD:0.7560768;iRNA_m5C:0 48794 chr16 2134391 2134391 1 + G T CESC 2134388 + 2134368 2134408 41 TGAGCAAGTCCAGCTCCTCTCCCGAGCTGCAGACTCTGCAG TGAGCAAGTCCAGCTCCTCTCCCTAGCTGCAGACTCTGCAG < 41bp 0.867574442497521 0.559613570396399 0.80130565 0.23678884 prediction 0.615921744202244 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2134388 chr16:2134391 stopgain 0.857 1 24 hm5C_associated_SNPs_53442 1 0 1 0 0 Endoplasmic reticulum 0.500231581469336 0.500231644046612 0.6026113 0 hm5C_site_48794 DeepMRMD:0.6026113;iRNA_m5C:0 Tuberous sclerosis syndrome Tuberous sclerosis syndrome 48795 chr15 101432805 101432805 1 + G T GBM 101432803 + 101432783 101432823 41 TAGAACCCTCAGATACTTTGCAGGGTGGGCAGACAAAATCC TAGAACCCTCAGATACTTTGCATGGTGGGCAGACAAAATCC < 41bp 0.835715727992585 0.527763751772234 0.88037694 0.21195164 prediction 0.6159039524407 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101432803 chr15:101432805 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_53443 0 0 0 0 2 Nucleus 0.500231644153651 0.500231643936979 0.76075388 4.33343583239321e-10 hm5C_site_48795 DeepMRMD:0.76075388;iRNA_m5C:4.33343583239321e-10 48796 chr5 112228307 112228307 1 + A C rs574112568 112228303 + 112228283 112228323 41 TTTGTGGTTTATTTGAAATACAACAATGTCCAAGAGGAAAA TTTGTGGTTTATTTGAAATACAACCATGTCCAAGAGGAAAA < 41bp 0.807940503052181 0.455022716210942 0.15251279 0.027314067 prediction 0.615881006104362 Functional Loss - SRP19 ENSG00000212643 CDS Human protein_coding chr5:112228303 chr5:112228307 nonsynonymous SNV 0.987 2 25 hm5C_associated_SNPs_53444 0 0 0 0 0 Ribosome 0.500231797438211 0.500231643795275 0 3.07285872969132e-07 hm5C_site_48796 DeepMRMD:0;iRNA_m5C:3.07285872969132e-07 48797 chr15 60297676 60297676 1 + A T OV 60297672 + 60297652 60297692 41 TCGGGCTTCAAGCACCCCTTCGCCATCGAGAACATCATCGC TCGGGCTTCAAGCACCCCTTCGCCTTCGAGAACATCATCGC < 41bp 0.807935836692607 0.48304158185222 0.01972726 0.027957857 prediction 0.615871673385214 Functional Loss - FOXB1 ENSG00000171956 CDS Human protein_coding chr15:60297672 chr15:60297676 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_53445 0 0 0 0 0 exosome 0.500231643782285 0.500231643921019 0 0 hm5C_site_48797 DeepMRMD:0;iRNA_m5C:0 48798 chr11 113270450 113270450 1 + G T rs113005509 113270447 + 113270427 113270467 41 TGCTCAGGTACGGAGCCAGCCTTGAGCTGCCCACCCACCAG TGCTCAGGTACGGAGCCAGCCTTTAGCTGCCCACCCACCAG < 41bp 0.807929216461096 0.423167176820684 0.11004639 0.05491075 prediction 0.615858432922193 Functional Loss - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113270447 chr11:113270450 stopgain 0.829 0 24 hm5C_associated_SNPs_53446 0 0 0 0 0 exosome 0.500231643902088 0.50023164340351 0 9.97156357485096e-10 hm5C_site_48798 DeepMRMD:0;iRNA_m5C:9.97156357485096e-10 48799 chr5 139750738 139750738 1 + G T UCEC 139750736 + 139750716 139750756 41 TATATGGGGGTGGCAGCGCTCAGCAGCATTCAGGTGAGCCC TATATGGGGGTGGCAGCGCTCATCAGCATTCAGGTGAGCCC < 41bp 0.807910713057971 0.490337600060935 0.53021526 0.060661674 prediction 0.615821426115942 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139750736 chr5:139750738 nonsynonymous SNV 0.705 3 23 hm5C_associated_SNPs_53447 0 0 0 0 2 unknown 0.500231643921082 0.500231643726908 0.0604305199999999 3.88346910185078e-10 hm5C_site_48799 DeepMRMD:0.0604305199999999;iRNA_m5C:3.88346910185078e-10 48800 chr19 1271175 1271175 1 + G T LUSC 1271172 + 1271152 1271192 41 AGACAGGGAGACCCAGAGATCTCGGGGATTTGGGTTTGTCA AGACAGGGAGACCCAGAGATCTCTGGGATTTGGGTTTGTCA < 41bp 0.807906574390133 0.432759722337101 0.87983 0.5551995 prediction 0.615813148780266 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271172 chr19:1271175 nonsynonymous SNV 0.962 3 24 hm5C_associated_SNPs_53448 0 0 1 1 3 Ribosome 0.500231392327742 0.500231643921092 0.649261 0 hm5C_site_48800 DeepMRMD:0.649261;iRNA_m5C:0 48801 chr12 53671697 53671697 1 + G T UCEC 53671695 + 53671675 53671715 41 TGTACGGTGTCTCCAGCAGACAGCAGCCTCACTGCAGATCC TGTACGGTGTCTCCAGCAGACATCAGCCTCACTGCAGATCC < 41bp 0.807901962711268 0.486388410240443 0.107575834 0.08064297 prediction 0.615803925422537 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53671695 chr12:53671697 nonsynonymous SNV 0.959 1 23 hm5C_associated_SNPs_53449 0 0 1 0 2 Nucleus 0.500259842504836 0.500231644343487 0 5.63963226989372e-05 hm5C_site_48801 DeepMRMD:0;iRNA_m5C:5.63963226989372e-05 48802 chrX 30738759 30738759 1 + G T COAD 30738756 + 30738736 30738776 41 AGATTTTGGATGCCATGAATCGAGACTGTGGAATTCCACTC AGATTTTGGATGCCATGAATCGATACTGTGGAATTCCACTC < 41bp 0.861156914901902 0.553257211278982 0.89388335 0.17598677 prediction 0.615799407245839 Functional Loss - GK ENSG00000198814 CDS Human protein_coding chrX:30738756 chrX:30738759 nonsynonymous SNV 0.967 5 24 hm5C_associated_SNPs_53450 0 0 0 0 2 chromatin 0.500231715695136 0.500231644447827 0.7877667 1.42494618105005e-07 hm5C_site_48802 DeepMRMD:0.7877667;iRNA_m5C:1.42494618105005e-07 48803 chr1 43316820 43316820 1 + G T COAD 43316818 + 43316798 43316838 41 CCATGGCAGAAAGTCACTGTCCGGGCTCGAGAGCTAGGGGA CCATGGCAGAAAGTCACTGTCCTGGCTCGAGAGCTAGGGGA < 41bp 0.807898086225425 0.493998317844366 0.8613847 0.1837089 prediction 0.61579617245085 Functional Loss - ZNF691 ENSG00000164011 CDS Human protein_coding chr1:43316818 chr1:43316820 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_53451 0 0 1 0 0 Cytosol 0.500231643921094 0.500231643921092 0.7227694 2.44249065417534e-15 hm5C_site_48803 DeepMRMD:0.7227694;iRNA_m5C:2.44249065417534e-15 48804 chr4 110757269 110757269 1 + A T LUAD 110757265 + 110757245 110757285 41 CATAGGGTGGGCTAGTTATGCCCCAGATCCTACTGGTGCTA CATAGGGTGGGCTAGTTATGCCCCTGATCCTACTGGTGCTA < 41bp 0.807877288127843 0.492423453652076 0.3398255 0.21368092 prediction 0.615754576255686 Functional Loss - RRH ENSG00000180245 CDS Human protein_coding chr4:110757265 chr4:110757269 synonymous SNV . 0 25 hm5C_associated_SNPs_53452 0 0 1 0 1 nucleoplasm 0.500231643919777 0.500231643850398 0 1.38759448375936e-10 hm5C_site_48804 DeepMRMD:0;iRNA_m5C:1.38759448375936e-10 48805 chr17 4356375 4356375 1 + G T rs11655342 4356373 + 4356353 4356393 41 GGTCATCTTGGGGGCAGAAGCTGCGAGGAGGTACAAGAAAG GGTCATCTTGGGGGCAGAAGCTTCGAGGAGGTACAAGAAAG < 41bp 0.829623711681172 0.521755380243319 0.79012954 0.3096484 prediction 0.615736662875707 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4356373 chr17:4356375 nonsynonymous SNV 0.012 0 23 hm5C_associated_SNPs_53453 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.58025908 0 hm5C_site_48805 DeepMRMD:0.58025908;iRNA_m5C:0 48806 chr2 241516383 241516383 1 + G T COAD 241516380 + 241516360 241516400 41 GACTACTATCCTGACCTCCACAGGGTGCGGCGCTTCCTGGA GACTACTATCCTGACCTCCACAGTGTGCGGCGCTTCCTGGA < 41bp 0.807864291529148 0.426359372125183 0.85596585 0.14124006 prediction 0.615728583058295 Functional Loss - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516380 chr2:241516383 nonsynonymous SNV 0.793 0 24 hm5C_associated_SNPs_53454 0 0 1 0 1 chromatin 0.500231693737364 0.500231642413579 0.7119317 1.02647568223091e-07 hm5C_site_48806 DeepMRMD:0.7119317;iRNA_m5C:1.02647568223091e-07 48807 chr5 139574220 139574220 1 + A C STAD 139574216 + 139574196 139574236 41 ACGGCTGGCAGGGTGGACCTCAGGAGCCTCCTAAAACCACA ACGGCTGGCAGGGTGGACCTCAGGCGCCTCCTAAAACCACA < 41bp 0.868399955708751 0.560545126599867 0.8290022 0.79881763 prediction 0.615709658217768 Functional Loss - CYSTM1 ENSG00000120306 CDS Human protein_coding chr5:139574216 chr5:139574220 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_53455 0 0 1 0 1 Ribosome 0.500231643919359 0.500231643921092 0.0603691400000002 0 hm5C_site_48807 DeepMRMD:0.0603691400000002;iRNA_m5C:0 48808 chr16 55806302 55806302 1 + G T LUSC 55806300 + 55806280 55806320 41 GCACAGGGGATGAACACAGCCCGGGGAACTGGGGTCACCTG GCACAGGGGATGAACACAGCCCTGGGAACTGGGGTCACCTG < 41bp 0.827540242426418 0.519693303881613 0.7856755 0.06980583 prediction 0.615693877089611 Functional Loss - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55806300 chr16:55806302 . . 0 23 hm5C_associated_SNPs_53456 0 0 0 0 1 unknown 0.500231616034961 0.500129844016202 0.571351 0.000203544037517878 hm5C_site_48808 DeepMRMD:0.571351;iRNA_m5C:0.000203544037517878 48809 chr8 105361777 105361777 1 + G T STAD 105361775 + 105361755 105361795 41 CAAGCAGTTTCAAAGCTTGCCAGGGTTTGAGGTTCACTTGA CAAGCAGTTTCAAAGCTTGCCATGGTTTGAGGTTCACTTGA < 41bp 0.831412508134809 0.523570027414245 0.90129495 0.30330485 prediction 0.615684961441128 Functional Loss - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361775 chr8:105361777 nonsynonymous SNV 0.375 3 23 hm5C_associated_SNPs_53457 0 0 0 0 1 exosome 0.500231644401124 0.500231643821051 0.8025899 1.16014620132887e-09 hm5C_site_48809 DeepMRMD:0.8025899;iRNA_m5C:1.16014620132887e-09 48810 chr11 65714901 65714901 1 + G T LUSC 65714898 + 65714878 65714918 41 CCCCAGTGGTCTCCAGCTGCCTGGGAGGAGGCCAGGATCAG CCCCAGTGGTCTCCAGCTGCCTGTGAGGAGGCCAGGATCAG < 41bp 0.883453457203001 0.575618605660152 0.37763909 0.13368502 prediction 0.615669703085699 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65714898 chr11:65714901 unknown 0.314 0 24 hm5C_associated_SNPs_53458 0 0 0 0 0 exosome 0.500231643981072 0.500231648165222 0 0 hm5C_site_48810 DeepMRMD:0;iRNA_m5C:0 48811 chr17 58506826 58506826 1 + G T SARC 58506824 + 58506804 58506844 41 TGGGGGCTGCACAGCAACATCAGCGGCATGAAGGAGCGGCT TGGGGGCTGCACAGCAACATCATCGGCATGAAGGAGCGGCT < 41bp 0.84101099018968 0.533184420225986 0.39768457 0.08310455 prediction 0.615653139927387 Functional Loss - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58506824 chr17:58506826 nonsynonymous SNV 0.273 1 23 hm5C_associated_SNPs_53459 0 0 0 0 1 exosome 0.500231636030859 0.500231533103159 0 2.05855399615373e-07 hm5C_site_48811 DeepMRMD:0;iRNA_m5C:2.05855399615373e-07 48812 chr3 14862302 14862302 1 + G T GBM 14862300 + 14862280 14862320 41 GGGTCAGGGTTGGATGACCACAGGATAAAGAGGAAAGAGGA GGGTCAGGGTTGGATGACCACATGATAAAGAGGAAAGAGGA < 41bp 0.807815219280784 0.486415622610093 0.42639002 0.15146935 prediction 0.615630438561568 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14862300 chr3:14862302 nonsynonymous SNV 0.051 3 23 hm5C_associated_SNPs_53460 0 0 0 0 0 Cytosol 0.500231643721726 0.500231643920951 0 0 hm5C_site_48812 DeepMRMD:0;iRNA_m5C:0 48813 chr19 41497250 41497250 1 + G T GBM 41497248 + 41497228 41497268 41 CCTCTTCCTTGCACTCCTCACAGGACTCTTGCTACTCCTGG CCTCTTCCTTGCACTCCTCACATGACTCTTGCTACTCCTGG < 41bp 0.838938326861751 0.531126996443286 0.14446682 0.07473233 prediction 0.61562266083693 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41497248 chr19:41497250 stopgain 0.016 0 23 hm5C_associated_SNPs_53461 0 0 0 0 0 Nucleus 0.500231643922576 0.500231679082493 0 0 hm5C_site_48813 DeepMRMD:0;iRNA_m5C:0 48814 chr11 66272098 66272098 1 + G T LUSC 66272096 + 66272076 66272116 41 CTCACAGGTGCTGAAGTCCACAGGGGATGTGGCCGGAGGGC CTCACAGGTGCTGAAGTCCACATGGGATGTGGCCGGAGGGC < 41bp 0.842549405142782 0.534738577900462 0.9300786 0.39226288 prediction 0.61562165448464 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66272096 chr11:66272098 nonsynonymous SNV 0.976 4 23 hm5C_associated_SNPs_53462 0 0 1 0 1 Nucleus 0.500231644832905 0.500231645075414 0.8601572 0 hm5C_site_48814 DeepMRMD:0.8601572;iRNA_m5C:0 48815 chr11 7091554 7091554 1 + G T COAD 7091551 + 7091531 7091571 41 GTTTGACATCTCTCTGCTGTCAAGATCTCTCCTCTGCTCTT GTTTGACATCTCTCTGCTGTCAATATCTCTCCTCTGCTCTT < 41bp 0.807808295523964 0.442861985511443 0.847291 0.10992929 prediction 0.615616591047928 Functional Loss - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7091551 chr11:7091554 nonsynonymous SNV 0.766 3 24 hm5C_associated_SNPs_53463 0 0 0 0 1 cytosol 0.500231643924416 0.50023165986736 0.694582 0 hm5C_site_48815 DeepMRMD:0.694582;iRNA_m5C:0 48816 chr1 23189667 23189667 1 + C A LUSC 23189670 - 23189650 23189690 41 CTTACTTGTGCAGGGCATGTCCAGGGGGTCCAGGTCTGCTC CTTACTTGTGCAGGGCATGTCCATGGGGTCCAGGTCTGCTC < 41bp 0.858832595155774 0.551030000368317 0.904963 0.37543607 prediction 0.615605189574914 Functional Loss - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23189670 chr1:23189667 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_53464 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643854381 0.809926 1.33423272430377e-10 hm5C_site_48816 DeepMRMD:0.809926;iRNA_m5C:1.33423272430377e-10 48817 chr6 28227707 28227707 1 + G T BLCA 28227704 + 28227684 28227724 41 AAGACCAGTCGTTCAAGAAACAAGAAAAAAAGAAAGAATAA AAGACCAGTCGTTCAAGAAACAATAAAAAAAGAAAGAATAA < 41bp 0.807789580478716 0.470339068919518 0.91826123 0.9208652 prediction 0.615579160957433 Functional Loss - NKAPL ENSG00000189134 CDS Human protein_coding chr6:28227704 chr6:28227707 nonsynonymous SNV 0.987 2 24 hm5C_associated_SNPs_53465 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48817 DeepMRMD:0;iRNA_m5C:0 48818 chr19 10940880 10940880 1 + G T STAD 10940877 + 10940857 10940897 41 AGCAGTGAGGGGCCCCACTCCAGGGCCCCCCCTGATTCCTG AGCAGTGAGGGGCCCCACTCCAGTGCCCCCCCTGATTCCTG < 41bp 0.807787619910186 0.448571026310954 0.8496469 0.12569654 prediction 0.615575239820371 Functional Loss - DNM2 ENSG00000079805 CDS Human protein_coding chr19:10940877 chr19:10940880 nonsynonymous SNV 0.916 5 24 hm5C_associated_SNPs_53466 0 0 1 0 1 Nucleus 0.500231643921092 0.500231697038068 0.6992938 0 hm5C_site_48818 DeepMRMD:0.6992938;iRNA_m5C:0 48819 chrX 134983792 134983792 1 + G T UCEC 134983789 + 134983769 134983809 41 AAGAAACATTCCAGAAAATCCAAGAGACACTCTTCATCTAA AAGAAACATTCCAGAAAATCCAATAGACACTCTTCATCTAA < 41bp 0.807748766087129 0.452374392704658 0.2807402 0.06501955 prediction 0.615497532174258 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134983789 chrX:134983792 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_53467 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_48819 DeepMRMD:0;iRNA_m5C:0 48820 chr1 232941175 232941175 1 + G T SARC 232941173 + 232941153 232941193 41 CTCGTTTGCGGAGCCCGCGGCGGCGTTTCCTGGGGCAACAG CTCGTTTGCGGAGCCCGCGGCGTCGTTTCCTGGGGCAACAG < 41bp 0.807748704728015 0.481787132933679 0.91645724 0.69638205 prediction 0.615497409456029 Functional Loss - MAP10 ENSG00000212916 CDS Human protein_coding chr1:232941173 chr1:232941175 nonsynonymous SNV 0.238 0 23 hm5C_associated_SNPs_53468 0 0 0 0 0 exosome 0.500231643921092 0.500231643904924 0.44015038 3.23376880828619e-11 hm5C_site_48820 DeepMRMD:0.44015038;iRNA_m5C:3.23376880828619e-11 48821 chr19 44116872 44116872 1 + G T UCEC 44116869 + 44116849 44116889 41 CAAGAAGAGTTACCGCCCACCAGGAGGCTCAGGTATAGGGA CAAGAAGAGTTACCGCCCACCAGTAGGCTCAGGTATAGGGA < 41bp 0.888212108746355 0.580466214908528 0.53688943 0.10829109 prediction 0.615491787675653 Functional Loss - SRRM5 ENSG00000226763 CDS Human protein_coding chr19:44116869 chr19:44116872 nonsynonymous SNV 0.016 2 24 hm5C_associated_SNPs_53469 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.07377886 0 hm5C_site_48821 DeepMRMD:0.07377886;iRNA_m5C:0 48822 chr2 198570478 198570478 1 + G T UCEC 198570475 + 198570455 198570495 41 CCCCGACCGAGCTGTGCGACCGAGTCTCTGAGCAGTTCCAG CCCCGACCGAGCTGTGCGACCGATTCTCTGAGCAGTTCCAG < 41bp 0.80774490752316 0.445002320083193 0.56748843 0.17368007 prediction 0.615489815046319 Functional Loss - MARS2 ENSG00000247626 CDS Human protein_coding chr2:198570475 chr2:198570478 nonsynonymous SNV 0.974 3 24 hm5C_associated_SNPs_53470 0 0 1 0 0 Ribosome 0.500231644166575 0.500231634491606 0.13497686 1.93499378742246e-08 hm5C_site_48822 DeepMRMD:0.13497686;iRNA_m5C:1.93499378742246e-08 48823 chr17 12647697 12647697 1 + G T UCEC 12647695 + 12647675 12647715 41 AGCTCCAAATCCTCAGCCAGCAGCAGCAGCAGCAGCAACAC AGCTCCAAATCCTCAGCCAGCATCAGCAGCAGCAGCAACAC < 41bp 0.807742558978943 0.471395288884352 0.48093846 0.12113184 prediction 0.615485117957886 Functional Loss - MYOCD ENSG00000141052;ENSG00000273452 CDS Human other chr17:12647695 chr17:12647697 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53471 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_48823 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 48824 chrX 154348284 154348284 1 + G T COAD 154348281 + 154348261 154348301 41 TTTCCTATTGAAGTGTTTACCAAGAATCTGTGCAGTCAGAT TTTCCTATTGAAGTGTTTACCAATAATCTGTGCAGTCAGAT < 41bp 0.807734086171036 0.451459404869741 0.7284901 0.31170356 prediction 0.615468172342073 Functional Loss - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154348281 chrX:154348284 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53472 0 0 1 0 0 Ribosome 0.500231609397359 0.500231550026029 0.4569802 1.18742660371041e-07 hm5C_site_48824 DeepMRMD:0.4569802;iRNA_m5C:1.18742660371041e-07 48825 chr10 118960684 118960684 1 + A C STAD 118960680 + 118960660 118960700 41 CTTTCTCCAGTGGTGGAAGACAGAAAACAGGATCTCCAGGG CTTTCTCCAGTGGTGGAAGACAGACAACAGGATCTCCAGGG < 41bp 0.807732826211254 0.435080937011876 0.22831514 0.17665237 prediction 0.615465652422507 Functional Loss - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118960680 chr10:118960684 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_53473 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_48825 DeepMRMD:0;iRNA_m5C:0 48826 chr1 35259912 35259912 1 + G T SARC 35259910 + 35259890 35259930 41 CTGACGGTGCTCTTCATCTTCCGCATCCTCATCCTGGGCCT CTGACGGTGCTCTTCATCTTCCTCATCCTCATCCTGGGCCT < 41bp 0.807730921667438 0.490032640151163 0.07156634 0.029516757 prediction 0.615461843334876 Functional Loss - GJA4 ENSG00000187513 CDS Human protein_coding chr1:35259910 chr1:35259912 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53474 0 0 0 0 0 cytosol 0.500231643914881 0.50023164394501 0 0 hm5C_site_48826 DeepMRMD:0;iRNA_m5C:0 48827 chr19 10385519 10385519 1 + G T LUSC 10385517 + 10385497 10385537 41 GGCTCCGTGCTGGTGACATGCAGCACCTCCTGTGACCAGCC GGCTCCGTGCTGGTGACATGCATCACCTCCTGTGACCAGCC < 41bp 0.830023402805483 0.522307541494169 0.21231282 0.10778877 prediction 0.615431722622628 Functional Loss - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10385517 chr19:10385519 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_53475 0 0 1 0 1 Nucleus 0.500231643921091 0.500231643921454 0 0 hm5C_site_48827 DeepMRMD:0;iRNA_m5C:0 48828 chr5 140751866 140751866 1 + G T rs35459734 140751863 + 140751843 140751883 41 ACGGCGCGTACCTTGGGCGACAGGGAGGCCGCCCGCCAGCG ACGGCGCGTACCTTGGGCGACAGTGAGGCCGCCCGCCAGCG < 41bp 0.80770608395294 0.431533236905478 0.93590933 0.8950594 prediction 0.61541216790588 Functional Loss - PCDHGB3 ENSG00000262209 CDS Human protein_coding chr5:140751863 chr5:140751866 nonsynonymous SNV 0.029 1 24 hm5C_associated_SNPs_53476 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0816998600000001 0 hm5C_site_48828 DeepMRMD:0.0816998600000001;iRNA_m5C:0 48829 chr1 247752232 247752232 1 + G T LUAD 247752229 + 247752209 247752249 41 AGGTCCCTGTGCTCATCAAGCTGGCTTGTGTGGGCACCACG AGGTCCCTGTGCTCATCAAGCTGTCTTGTGTGGGCACCACG < 41bp 0.807700504176256 0.442621219329534 0.295182 0.13180435 prediction 0.615401008352512 Functional Loss - OR2G2 ENSG00000177489 CDS Human protein_coding chr1:247752229 chr1:247752232 nonsynonymous SNV 0.127 0 24 hm5C_associated_SNPs_53477 0 0 0 0 0 unknown 0.499774253695114 0.500008476167904 0 0 hm5C_site_48829 DeepMRMD:0;iRNA_m5C:0 48830 chr16 3459073 3459073 1 + A C rs532323899 3459069 + 3459049 3459089 41 CATTCTGCTGTGAGGAGGCCCAGAAAAGGCCAACCAGGGCC CATTCTGCTGTGAGGAGGCCCAGACAAGGCCAACCAGGGCC < 41bp 0.868277218397955 0.560585478555517 0.2355206 0.123622715 prediction 0.615383479684877 Functional Loss - ZNF174 ENSG00000103343 UTR3 Human protein_coding chr16:3459069 chr16:3459073 . . 0 25 hm5C_associated_SNPs_53478 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48830 DeepMRMD:0;iRNA_m5C:0 48831 chr7 155538188 155538188 1 + G T THYM 155538186 + 155538166 155538206 41 CGTCCATCCAGGGCCGGCCCCAGGACACAAAGCCTGGCGTG CGTCCATCCAGGGCCGGCCCCATGACACAAAGCCTGGCGTG < 41bp 0.807670635210681 0.486381112404762 0.92186165 0.8763796 prediction 0.615341270421362 Functional Loss - RBM33 ENSG00000184863 CDS Human protein_coding chr7:155538186 chr7:155538188 nonsynonymous SNV 0.946 2 23 hm5C_associated_SNPs_53479 0 0 1 0 0 Nucleus 0.500231643921086 0.500231625250263 0.0909640999999999 3.73416466636911e-08 hm5C_site_48831 DeepMRMD:0.0909640999999999;iRNA_m5C:3.73416466636911e-08 48832 chr7 100190536 100190536 1 + C A READ 100190539 - 100190519 100190559 41 TCTTGAAGACCCGCTGCCCACTAGACTGCAGATAGACCTCA TCTTGAAGACCCGCTGCCCACTATACTGCAGATAGACCTCA < 41bp 0.870067281324523 0.562402633667338 0.03329298 0.012033343 prediction 0.615329295314369 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100190539 chr7:100190536 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53480 0 0 0 0 0 exosome 0.500231350375213 0.500231717082492 0 0 hm5C_site_48832 DeepMRMD:0;iRNA_m5C:0 48833 chr19 36273671 36273671 1 + G T LUSC 36273668 + 36273648 36273688 41 CTGCTCCCACCCCCAGGACCCTGGAGTACCTGCTGAGGCAC CTGCTCCCACCCCCAGGACCCTGTAGTACCTGCTGAGGCAC < 41bp 0.880031220243058 0.572371062136964 0.45199925 0.05361992 prediction 0.615320316212187 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36273668 chr19:36273671 stopgain 0.998 1 24 hm5C_associated_SNPs_53481 0 0 1 0 1 chromatin 0.500231643921083 0.500231643921092 0 0 hm5C_site_48833 DeepMRMD:0;iRNA_m5C:0 48834 chr11 129993624 129993624 1 + G T SKCM 129993622 + 129993602 129993642 41 TATGGTGGCTGCGGCGGCAACAGGAACAATTTTGAGTCTGA TATGGTGGCTGCGGCGGCAACATGAACAATTTTGAGTCTGA < 41bp 0.807656788094082 0.498253198837655 0.64251024 0.26301706 prediction 0.615313576188165 Functional Loss - APLP2 ENSG00000084234 CDS Human protein_coding chr11:129993622 chr11:129993624 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53482 0 0 1 0 1 Endoplasmic reticulum 0.500231643920522 0.500231643889912 0.28502048 6.12194739346705e-11 hm5C_site_48834 DeepMRMD:0.28502048;iRNA_m5C:6.12194739346705e-11 48835 chr3 16343209 16343209 1 + G T UCEC 16343206 + 16343186 16343226 41 CCCTCAGCCTGCGGATGCCTCTAGAAACCTCGTGTTGATTG CCCTCAGCCTGCGGATGCCTCTATAAACCTCGTGTTGATTG < 41bp 0.869919581492724 0.562268292290739 0.34461892 0.20479888 prediction 0.615302578403971 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16343206 chr3:16343209 nonsynonymous SNV 0.962 1 24 hm5C_associated_SNPs_53483 0 0 1 0 0 Ribosome 0.500231643897538 0.500231643921092 0 0 hm5C_site_48835 DeepMRMD:0;iRNA_m5C:0 48836 chr17 51901387 51901387 1 + G T LUSC 51901385 + 51901365 51901405 41 GTTCTAAGGGCATTTATGCTCTGGTGGCACAGGATGTCTTT GTTCTAAGGGCATTTATGCTCTTGTGGCACAGGATGTCTTT < 41bp 0.807647194562896 0.487091314715404 0.3240952 0.088894635 prediction 0.615294389125792 Functional Loss - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901385 chr17:51901387 synonymous SNV . 0 23 hm5C_associated_SNPs_53484 0 0 0 0 0 exosome 0.500231643920064 0.500231643920916 0 0 hm5C_site_48836 DeepMRMD:0;iRNA_m5C:0 48837 chr16 3063479 3063479 1 + G T COAD 3063477 + 3063457 3063497 41 GTGACCGCCTTCATCGGCAACAGCATCGTGGTGGCCCAGGT GTGACCGCCTTCATCGGCAACATCATCGTGGTGGCCCAGGT < 41bp 0.819447327799092 0.511806414070393 0.074801534 0.020420402 prediction 0.615281827457397 Functional Loss - CLDN9 ENSG00000213937 CDS Human protein_coding chr16:3063477 chr16:3063479 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53485 0 0 0 0 0 exosome 0.500231688052651 0.500231499487675 0 3.77129951489863e-07 hm5C_site_48837 DeepMRMD:0;iRNA_m5C:3.77129951489863e-07 48838 chr21 46387078 46387078 1 + G T rs2294168 46387076 + 46387056 46387096 41 CTGCTGGGGCTCGAGGCTGGCAGCCGGCGCCAAGCCCGCAG CTGCTGGGGCTCGAGGCTGGCATCCGGCGCCAAGCCCGCAG < 41bp 0.828891086791386 0.521256345010328 0.7385279 0.4125307 prediction 0.615269483562116 Functional Loss - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46387076 chr21:46387078 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_53486 0 0 1 0 1 Ribosome 0.500231643929108 0.500231643921296 0.4770558 1.56246127147597e-11 hm5C_site_48838 DeepMRMD:0.4770558;iRNA_m5C:1.56246127147597e-11 48839 chr21 47985676 47985676 1 + G T UCEC 47985673 + 47985653 47985693 41 ACCGGGTACTACACCGTTTACGGGGAGGAGGCGCTTCATGC ACCGGGTACTACACCGTTTACGGTGAGGAGGCGCTTCATGC < 41bp 0.807630393184535 0.450900468485249 0.88680863 0.47124434 prediction 0.61526078636907 Functional Loss - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47985673 chr21:47985676 synonymous SNV . 0 24 hm5C_associated_SNPs_53487 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.77361726 0 hm5C_site_48839 DeepMRMD:0.77361726;iRNA_m5C:0 48840 chr1 55457696 55457696 1 + G T UCEC 55457693 + 55457673 55457713 41 ATGAGAGCATCAGCCTTGCTCTTGATGCCGTTTCTGCGGAG ATGAGAGCATCAGCCTTGCTCTTTATGCCGTTTCTGCGGAG < 41bp 0.86950660740125 0.561891402585443 0.33902085 0.19938955 prediction 0.615230409631613 Functional Loss - TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55457693 chr1:55457696 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_53488 0 0 0 0 0 Cytosol 0.500231643647914 0.500231643943334 0 0 hm5C_site_48840 DeepMRMD:0;iRNA_m5C:0 48841 chr9 134165440 134165440 1 + G T LUSC 134165438 + 134165418 134165458 41 GACCGCAACAACGTCCTCAACCGGGCTGAGTTCCTGTCCCT GACCGCAACAACGTCCTCAACCTGGCTGAGTTCCTGTCCCT < 41bp 0.835986263971041 0.528371818645356 0.8992517 0.43499875 prediction 0.615228890651369 Functional Loss - PLPP7 ENSG00000160539 CDS Human protein_coding chr9:134165438 chr9:134165440 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_53489 0 0 0 0 0 exosome 0.500231643922606 0.500231643921092 0.7985034 3.0275781881528e-12 hm5C_site_48841 DeepMRMD:0.7985034;iRNA_m5C:3.0275781881528e-12 48842 chr16 55362726 55362726 1 + G T LUAD 55362723 + 55362703 55362743 41 CGAGGAGGTAGTGGCCACAGCTGGGGACAGGCTGACGGAGT CGAGGAGGTAGTGGCCACAGCTGTGGACAGGCTGACGGAGT < 41bp 0.896032911430441 0.588421711762154 0.5743059 0.23463205 prediction 0.615222399336575 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55362723 chr16:55362726 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_53490 0 0 0 0 0 exosome 0.500231649203976 0.500230971102418 0.1486118 1.35620311447759e-06 hm5C_site_48842 DeepMRMD:0.1486118;iRNA_m5C:1.35620311447759e-06 48843 chr19 3527734 3527734 1 + G T LIHC 3527732 + 3527712 3527752 41 AGGACGACTTCTACCTCAATCTGGTGGACTGGTCGTCCCTC AGGACGACTTCTACCTCAATCTTGTGGACTGGTCGTCCCTC < 41bp 0.827033034698038 0.51942953289716 0.5638547 0.30055487 prediction 0.615207003601755 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527732 chr19:3527734 synonymous SNV . 0 23 hm5C_associated_SNPs_53491 0 0 1 0 1 Ribosome 0.500232013440345 0.500231695564115 0.1277094 6.35752460231842e-07 hm5C_site_48843 DeepMRMD:0.1277094;iRNA_m5C:6.35752460231842e-07 48844 chrX 152686378 152686378 1 + G T LUAD 152686375 + 152686355 152686395 41 CACAGTGGCGAGAAGCCTTACGCGTGCCCCGAGTGCGGCAA CACAGTGGCGAGAAGCCTTACGCTTGCCCCGAGTGCGGCAA < 41bp 0.807597732614182 0.441066492266698 0.19203433 0.14576802 prediction 0.615195465228365 Functional Loss - ZFP92 ENSG00000189420 CDS Human protein_coding chrX:152686375 chrX:152686378 synonymous SNV . 0 24 hm5C_associated_SNPs_53492 0 0 0 0 0 nucleolus 0.500231643921101 0.500231643921094 0 1.4432899320127e-14 hm5C_site_48844 DeepMRMD:0;iRNA_m5C:1.4432899320127e-14 48845 chr1 212208947 212208947 1 + C A rs182678571 212208949 - 212208929 212208969 41 GAGCTCCTTGAGCGCCTGCGCAGGGGGTAGCAGAGGCGCGG GAGCTCCTTGAGCGCCTGCGCATGGGGTAGCAGAGGCGCGG < 41bp 0.830650399776664 0.52306197911089 0.9142513 0.83907086 prediction 0.615176841331549 Functional Loss - DTL;INTS7 ENSG00000143476 UTR5 Human protein_coding chr1:212208949 chr1:212208947 . . 0 23 hm5C_associated_SNPs_53493 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.15036088 0 hm5C_site_48845 DeepMRMD:0.15036088;iRNA_m5C:0 48846 chr14 73425486 73425486 1 + G T LUAD 73425484 + 73425464 73425504 41 GGCTGCTCATGGCTGTCGGGCAGGACCTTTACTGTTACTCC GGCTGCTCATGGCTGTCGGGCATGACCTTTACTGTTACTCC < 41bp 0.828050283095378 0.520467352839869 0.13763607 0.056666374 prediction 0.615165860511019 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73425484 chr14:73425486 nonsynonymous SNV 0.754 1 23 hm5C_associated_SNPs_53494 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_48846 DeepMRMD:0;iRNA_m5C:0 48847 chr11 33566887 33566887 1 + G T LUSC 33566885 + 33566865 33566905 41 CTGGCAAAATGGCATCCAACCTGGAGTGTCAGATGTCCAGT CTGGCAAAATGGCATCCAACCTTGAGTGTCAGATGTCCAGT < 41bp 0.80758103368608 0.488564566330439 0.30111945 0.017858177 prediction 0.615162067372159 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33566885 chr11:33566887 synonymous SNV . 0 23 hm5C_associated_SNPs_53495 0 0 0 0 1 exosome 0.500231693967573 0.500231647381531 0 9.31720838259764e-08 hm5C_site_48847 DeepMRMD:0;iRNA_m5C:9.31720838259764e-08 48848 chr22 21990948 21990948 1 + G T COAD 21990946 + 21990926 21990966 41 ACGTGCTCAGGGACCTTTCCCTGGGCTTAAAGAAGGTAAAA ACGTGCTCAGGGACCTTTCCCTTGGCTTAAAGAAGGTAAAA < 41bp 0.807576988382962 0.487394643229609 0.9011445 0.2009336 prediction 0.615153976765924 Functional Loss - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21990946 chr22:21990948 synonymous SNV . 0 23 hm5C_associated_SNPs_53496 0 0 0 0 0 nucleolus 0.500231643921092 0.500231643921092 0.802289 0 hm5C_site_48848 DeepMRMD:0.802289;iRNA_m5C:0 48849 chrX 129474326 129474326 1 + G T BRCA 129474324 + 129474304 129474344 41 ACGGCGGCCGTGATTGTAAGCGGAGTAAGCAAACACCTCCA ACGGCGGCCGTGATTGTAAGCGTAGTAAGCAAACACCTCCA < 41bp 0.807570457046976 0.493722715198407 0.90517163 0.20304295 prediction 0.615140914093951 Functional Loss - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129474324 chrX:129474326 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_53497 0 0 0 0 1 Endoplasmic reticulum 0.500231685759126 0.500231643989233 0.81034326 8.35397859777487e-08 hm5C_site_48849 DeepMRMD:0.81034326;iRNA_m5C:8.35397859777487e-08 48850 chr2 172945060 172945060 1 + G T SARC 172945058 + 172945038 172945078 41 CTGGGTGCTGTGTTACAGGTCGGCGCAGTTCGAGCACACGG CTGGGTGCTGTGTTACAGGTCGTCGCAGTTCGAGCACACGG < 41bp 0.809875586757927 0.502316933048799 0.2672338 0.07341659 prediction 0.615117307418256 Functional Loss - METAP1D ENSG00000172878 CDS Human protein_coding chr2:172945058 chr2:172945060 nonsynonymous SNV 0.779 4 23 hm5C_associated_SNPs_53498 0 0 0 0 1 chromatin 0.500231649688105 0.500231648422313 0 2.53158427554467e-09 hm5C_site_48850 DeepMRMD:0;iRNA_m5C:2.53158427554467e-09 48851 chr19 7677045 7677045 1 + G T COAD 7677043 + 7677023 7677063 41 GAAGGCGGTGGCTTCGTCCCCAGCAGCCACCAACTCCGAGG GAAGGCGGTGGCTTCGTCCCCATCAGCCACCAACTCCGAGG < 41bp 0.807557970224429 0.481401294186446 0.37324607 0.1335173 prediction 0.615115940448858 Functional Loss - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7677043 chr19:7677045 nonsynonymous SNV 0.077 0 23 hm5C_associated_SNPs_53499 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921093 0 0 hm5C_site_48851 DeepMRMD:0;iRNA_m5C:0 48852 chr11 56128026 56128026 1 + G T LUAD 56128023 + 56128003 56128043 41 TCTATGAATGTGCCACCCAACTGGGAGGGTTCTTGTTCTTT TCTATGAATGTGCCACCCAACTGTGAGGGTTCTTGTTCTTT < 41bp 0.807546938957682 0.45652241437423 0.42029384 0.085508704 prediction 0.615093877915364 Functional Loss - OR8J1 ENSG00000172487 CDS Human protein_coding chr11:56128023 chr11:56128026 stopgain 0.085 1 24 hm5C_associated_SNPs_53500 0 0 0 0 0 unknown 0.500231643921245 0.500231643923683 0 0 hm5C_site_48852 DeepMRMD:0;iRNA_m5C:0 48853 chr12 71833953 71833953 1 + G T SKCM 71833951 + 71833931 71833971 41 CTCCCAGGTCTGGTGTGTTGCTGAGGGGCTGCCCCACACAC CTCCCAGGTCTGGTGTGTTGCTTAGGGGCTGCCCCACACAC < 41bp 0.838655227290489 0.531119183707563 0.18764955 0.042360574 prediction 0.615072087165852 Functional Loss - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71833951 chr12:71833953 synonymous SNV . 0 23 hm5C_associated_SNPs_53501 0 0 1 0 0 Nucleus 0.500227124957904 0.500231813294653 0 0 hm5C_site_48853 DeepMRMD:0;iRNA_m5C:0 48854 chr16 1412863 1412863 1 + A C READ 1412859 + 1412839 1412879 41 TCTCAAAGGAGATCAAAAGGCTGAAAGGTTTGCTCACCCAG TCTCAAAGGAGATCAAAAGGCTGACAGGTTTGCTCACCCAG < 41bp 0.807535937157146 0.411768300198902 0.16502875 0.09230614 prediction 0.615071874314293 Functional Loss - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412859 chr16:1412863 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_53502 0 0 1 0 2 Ribosome 0.500231610758566 0.500231624779935 0 0 hm5C_site_48854 DeepMRMD:0;iRNA_m5C:0 48855 chr7 37780183 37780183 1 + G T SARC 37780181 + 37780161 37780201 41 ATTAACTTGGTGGTGGTCCACAGCGTTTTTCTGCTGACAGT ATTAACTTGGTGGTGGTCCACATCGTTTTTCTGCTGACAGT < 41bp 0.815362313553209 0.507838551161079 0.277144 0.10055134 prediction 0.615047524784261 Functional Loss - GPR141 ENSG00000187037 CDS Human protein_coding chr7:37780181 chr7:37780183 nonsynonymous SNV 0.818 1 23 hm5C_associated_SNPs_53503 0 0 0 0 0 exosome 0.500231569519164 0.500231643921091 0 0 hm5C_site_48855 DeepMRMD:0;iRNA_m5C:0 48856 chrX 102864443 102864443 1 + G T CESC 102864440 + 102864420 102864460 41 GTGGAGATGTGTCAAGGGCTCAAGAGGAGCTAAGGAAAAAA GTGGAGATGTGTCAAGGGCTCAATAGGAGCTAAGGAAAAAA < 41bp 0.807523275152657 0.441305464395067 0.8437356 0.09022477 prediction 0.615046550305314 Functional Loss - TCEAL3 ENSG00000196507 CDS Human protein_coding chrX:102864440 chrX:102864443 stopgain 0.987 0 24 hm5C_associated_SNPs_53504 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0.6874712 0 hm5C_site_48856 DeepMRMD:0.6874712;iRNA_m5C:0 48857 chr8 10387070 10387070 1 + G T UCEC 10387068 + 10387048 10387088 41 AACTCGGTATTCCAGAATCACAGGGGGGATGGAGGCGGAGG AACTCGGTATTCCAGAATCACATGGGGGATGGAGGCGGAGG < 41bp 0.841140045000998 0.533619355695753 0.9246795 0.7483661 prediction 0.61504137861049 Functional Loss - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10387068 chr8:10387070 nonsynonymous SNV 0.333 4 23 hm5C_associated_SNPs_53505 0 0 0 0 1 exosome 0.500231650080727 0.500231643919794 0.3526268 1.23218659719981e-08 hm5C_site_48857 DeepMRMD:0.3526268;iRNA_m5C:1.23218659719981e-08 48858 chr8 144332450 144332450 1 + G T LUAD 144332448 + 144332428 144332468 41 GGAGAGAAGCCCTTCAAATGCGGGGAGTGCGGGAAAGCCTT GGAGAGAAGCCCTTCAAATGCGTGGAGTGCGGGAAAGCCTT < 41bp 0.807477344904466 0.483202460427617 0.9193939 0.33411503 prediction 0.614954689808932 Functional Loss - ZFP41 ENSG00000181638;ENSG00000264668 CDS Human other chr8:144332448 chr8:144332450 nonsynonymous SNV 0.030 0 23 hm5C_associated_SNPs_53506 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.8387878 0 hm5C_site_48858 DeepMRMD:0.8387878;iRNA_m5C:0 48859 chr1 117559956 117559956 1 + G T LUAD 117559953 + 117559933 117559973 41 ACAAGGCTGGAGAAAATGGACTGGGCCACCTTCCAGCTGGA ACAAGGCTGGAGAAAATGGACTGTGCCACCTTCCAGCTGGA < 41bp 0.80747189026676 0.424123394520183 0.80632544 0.21759492 prediction 0.614943780533521 Functional Loss - CD101 ENSG00000134256 CDS Human protein_coding chr1:117559953 chr1:117559956 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53507 0 0 1 0 0 cytosol 0.500231643944586 0.500231607616343 0.61265088 7.26564854947043e-08 hm5C_site_48859 DeepMRMD:0.61265088;iRNA_m5C:7.26564854947043e-08 48860 chr11 15197607 15197607 1 + G T UCEC 15197605 + 15197585 15197625 41 AGCGAGTACAGTGCTGTCAGCAGGAACTCCTTGAAGGAAAT AGCGAGTACAGTGCTGTCAGCATGAACTCCTTGAAGGAAAT < 41bp 0.80746871655964 0.474609689686742 0.8877777 0.2541585 prediction 0.614937433119279 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15197605 chr11:15197607 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_53508 0 0 0 0 1 exosome 0.500231642808999 0.500231334680595 0.7755554 6.16256807361992e-07 hm5C_site_48860 DeepMRMD:0.7755554;iRNA_m5C:6.16256807361992e-07 48861 chr4 123542076 123542076 1 + C A LUSC 123542079 - 123542059 123542099 41 TGGTCCACAAATCAAGCTCCCAAGGTCAAGATCGCCACATG TGGTCCACAAATCAAGCTCCCAATGTCAAGATCGCCACATG < 41bp 0.80746661891061 0.441385068448409 0.12507623 0.0075148344 prediction 0.61493323782122 Functional Loss - IL21 ENSG00000138684 CDS Human protein_coding chr4:123542079 chr4:123542076 nonsynonymous SNV 0.281 3 24 hm5C_associated_SNPs_53509 0 0 0 0 1 exosome 0.500231577678762 0.500231771151973 0 0 hm5C_site_48861 DeepMRMD:0;iRNA_m5C:0 48862 chr1 20517591 20517591 1 + G T UCEC 20517588 + 20517568 20517608 41 AGGAAATTCATCGTCCGAACCAAGAAACAGGGCTCTTCCAG AGGAAATTCATCGTCCGAACCAATAAACAGGGCTCTTCCAG < 41bp 0.880219477906709 0.57276479882307 0.4663018 0.74892235 prediction 0.614909358167278 Functional Loss - UBXN10 ENSG00000162543 CDS Human protein_coding chr1:20517588 chr1:20517591 nonsynonymous SNV 0.358 1 24 hm5C_associated_SNPs_53510 0 0 0 0 0 Cytosol 0.500231643921295 0.500231643921105 0 3.81250586656279e-13 hm5C_site_48862 DeepMRMD:0;iRNA_m5C:3.81250586656279e-13 48863 chr19 57642405 57642405 1 + G T HNSC 57642402 + 57642382 57642422 41 ACCTGAATCACCTTGGGGCACTGGGTTCTGACAACCCAGGA ACCTGAATCACCTTGGGGCACTGTGTTCTGACAACCCAGGA < 41bp 0.807445076240245 0.468839530171001 0.35653043 0.2840888 prediction 0.61489015248049 Functional Loss - USP29 ENSG00000131864 CDS Human protein_coding chr19:57642402 chr19:57642405 nonsynonymous SNV 0.186 0 24 hm5C_associated_SNPs_53511 0 0 0 0 0 unknown 0.500231643921092 0.500231643923255 0 0 hm5C_site_48863 DeepMRMD:0;iRNA_m5C:0 48864 chr15 59808970 59808970 1 + G T PRAD 59808967 + 59808947 59808987 41 GGCAAGAAGAGGAGAAGATGCACGGGCGAATCACCAAGCTG GGCAAGAAGAGGAGAAGATGCACTGGCGAATCACCAAGCTG < 41bp 0.874093626770285 0.566649894192664 0.88720405 0.84067476 prediction 0.614887465155242 Functional Loss - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59808967 chr15:59808970 nonsynonymous SNV 0.869 2 24 hm5C_associated_SNPs_53512 0 0 0 0 1 Cytosol 0.500231643921093 0.50023196794782 0.0930585800000001 0 hm5C_site_48864 DeepMRMD:0.0930585800000001;iRNA_m5C:0 48865 chr6 170627007 170627007 1 + G T LUAD 170627004 + 170626984 170627024 41 AGCATAACTGTCTTGGGATTCTGGGGGAAGACACTGATTAC AGCATAACTGTCTTGGGATTCTGTGGGAAGACACTGATTAC < 41bp 0.807433491123589 0.445409859246832 0.9002253 0.43216598 prediction 0.614866982247179 Functional Loss - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170627004 chr6:170627007 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_53513 0 0 1 0 0 Cytosol 0.50023164391668 0.500231643921419 0.8004506 0 hm5C_site_48865 DeepMRMD:0.8004506;iRNA_m5C:0 48866 chr12 110353309 110353309 1 + G T UCEC 110353307 + 110353287 110353327 41 AGCTCTCAGATGCCCTGCTGCAGCAGGAGGCGGAGACTATG AGCTCTCAGATGCCCTGCTGCATCAGGAGGCGGAGACTATG < 41bp 0.807427787565258 0.484549452905601 0.85660434 0.23246655 prediction 0.614855575130517 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110353307 chr12:110353309 nonsynonymous SNV 0.989 2 23 hm5C_associated_SNPs_53514 0 0 1 0 1 Cytosol 0.500231515219412 0.50023160849489 0.71320868 0 hm5C_site_48866 DeepMRMD:0.71320868;iRNA_m5C:0 48867 chr3 14965551 14965551 1 + C A LUAD 14965554 - 14965534 14965574 41 AAAAGGCACTGCCCGAGAAGCGGGGTGAAGACAGCGGGAAG AAAAGGCACTGCCCGAGAAGCGGTGTGAAGACAGCGGGAAG < 41bp 0.875274273684911 0.567849389459268 0.9343035 0.30987927 prediction 0.614849768451287 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14965554 chr3:14965551 nonsynonymous SNV 0.584 1 24 hm5C_associated_SNPs_53515 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643921092 0.868607 1.55431223447522e-15 hm5C_site_48867 DeepMRMD:0.868607;iRNA_m5C:1.55431223447522e-15 48868 chr22 49146045 49146045 1 + A C rs574579721 49146041 + 49146021 49146061 41 CGCCTGAGACACGACGCCTGCCCCAGGGGACTGTCAGGCAC CGCCTGAGACACGACGCCTGCCCCCGGGGACTGTCAGGCAC < 41bp 0.807418526653451 0.419728567395573 0.034999102 0.035987735 prediction 0.614837053306903 Functional Loss - FAM19A5 ENSG00000219438 UTR3 Human protein_coding chr22:49146041 chr22:49146045 . . 0 25 hm5C_associated_SNPs_53516 0 0 0 0 0 membrane 0.500234360859913 0.500231643836338 0 5.43404714981044e-06 hm5C_site_48868 DeepMRMD:0;iRNA_m5C:5.43404714981044e-06 48869 chr18 8824940 8824940 1 + G T LUAD 8824937 + 8824917 8824957 41 GAGGTGGGGCGGGCAGGGCACGAGGACAGCACAGAGCCTTT GAGGTGGGGCGGGCAGGGCACGATGACAGCACAGAGCCTTT < 41bp 0.807417567663273 0.438159222781947 0.9036647 0.34895867 prediction 0.614835135326546 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8824937 chr18:8824940 nonsynonymous SNV 0.038 0 24 hm5C_associated_SNPs_53517 0 0 1 0 0 Nucleus 0.500231695881767 0.500231643921093 0.8073294 1.0392134863757e-07 hm5C_site_48869 DeepMRMD:0.8073294;iRNA_m5C:1.0392134863757e-07 48870 chr2 61118917 61118917 1 + G T ESCA 61118914 + 61118894 61118934 41 GCGATCAGCAGGCAGCATTCCAGGGGAGCACAGCACAGACA GCGATCAGCAGGCAGCATTCCAGTGGAGCACAGCACAGACA < 41bp 0.866568552934034 0.559153604065329 0.9315147 0.32706222 prediction 0.614829897737411 Functional Loss - REL ENSG00000162924 CDS Human protein_coding chr2:61118914 chr2:61118917 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_53518 0 0 1 0 2 Cytosol 0.500231638297027 0.500231629196035 0.8630294 1.82019828098845e-08 hm5C_site_48870 DeepMRMD:0.8630294;iRNA_m5C:1.82019828098845e-08 48871 chr19 572596 572596 1 + A C rs28915406 572592 + 572572 572612 41 ATAGCGGCCGCGGGCGGCGGCGGCAGCGGTTGGAGGTTGTA ATAGCGGCCGCGGGCGGCGGCGGCCGCGGTTGGAGGTTGTA < 41bp 0.807394224745167 0.475779799963356 0.91675663 0.90607953 prediction 0.614788449490333 Functional Loss - BSG ENSG00000172270 UTR5 Human protein_coding chr19:572592 chr19:572596 . . 0 25 hm5C_associated_SNPs_53519 0 0 1 0 0 Ribosome 0.500231960359046 0.500231643921092 0.0213542 6.3287590768013e-07 hm5C_site_48871 DeepMRMD:0.0213542;iRNA_m5C:6.3287590768013e-07 48872 chr19 51767348 51767348 1 + G T KIRC 51767345 + 51767325 51767365 41 TGATGCTTCCACTGCTACAGCTGGGTAAGTAAGGTGAGAAG TGATGCTTCCACTGCTACAGCTGTGTAAGTAAGGTGAGAAG < 41bp 0.807390645243067 0.447072943759788 0.67189044 0.1642032 prediction 0.614781290486133 Functional Loss - SIGLECL1 ENSG00000179213 CDS Human protein_coding chr19:51767345 chr19:51767348 stopgain 0.055 0 24 hm5C_associated_SNPs_53520 0 0 0 0 2 unknown 0.500231643939203 0.500231350412663 0.34378088 5.87053081702038e-07 hm5C_site_48872 DeepMRMD:0.34378088;iRNA_m5C:5.87053081702038e-07 48873 chrX 86773043 86773043 1 + G T LUAD 86773041 + 86773021 86773061 41 AGCATAGAGGGACCCCGGTTCAGGGCAGGTTGAAGAGCCAC AGCATAGAGGGACCCCGGTTCATGGCAGGTTGAAGAGCCAC < 41bp 0.807389719596372 0.480712495190194 0.8945098 0.53772557 prediction 0.614779439192743 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86773041 chrX:86773043 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53521 0 0 0 0 0 chromatin 0.500231643921105 0.500231643921093 0.71356846 2.44249065417534e-14 hm5C_site_48873 DeepMRMD:0.71356846;iRNA_m5C:2.44249065417534e-14 48874 chr5 149216164 149216164 1 + G T LUAD 149216162 + 149216142 149216182 41 GCTGAGGTCCTGGGAGCCGTCTGGGGTTCACCTTGAGGACT GCTGAGGTCCTGGGAGCCGTCTTGGGTTCACCTTGAGGACT < 41bp 0.807387278832643 0.477770687146027 0.8599777 0.29271227 prediction 0.614774557665286 Functional Loss - PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149216162 chr5:149216164 nonsynonymous SNV 0.236 3 23 hm5C_associated_SNPs_53522 0 0 1 0 0 chromatin 0.500232120236038 0.500231913261679 0.7199554 4.13948717525869e-07 hm5C_site_48874 DeepMRMD:0.7199554;iRNA_m5C:4.13948717525869e-07 48875 chrX 134655025 134655025 1 + G T UCEC 134655022 + 134655002 134655042 41 AAAGGCGCTGTGGAGTTATTCTTGAAGGTAAAGGGAGGGGA AAAGGCGCTGTGGAGTTATTCTTTAAGGTAAAGGGAGGGGA < 41bp 0.807376162150528 0.45839217625609 0.07932192 0.016502112 prediction 0.614752324301057 Functional Loss - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134655022 chrX:134655025 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53523 0 0 1 0 1 Cytosol 0.500231644124607 0.500231676858654 0 0 hm5C_site_48875 DeepMRMD:0;iRNA_m5C:0 48876 chr12 105514362 105514362 1 + G T UCEC 105514359 + 105514339 105514379 41 ACCCAAAATTATAGAGACAACTGGAGTTCATTTTCAGGTAA ACCCAAAATTATAGAGACAACTGTAGTTCATTTTCAGGTAA < 41bp 0.824388204675291 0.517019995799063 0.17962343 0.069779426 prediction 0.614736417752456 Functional Loss - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105514359 chr12:105514362 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53524 0 0 1 0 2 unknown 0.50023161327877 0.500231630748536 0 0 hm5C_site_48876 DeepMRMD:0;iRNA_m5C:0 48877 chr6 133138113 133138113 1 + G T UCEC 133138110 + 133138090 133138130 41 TCCCAATAGGTTGATGACAACAAGAAACTAGGAGAATGGGT TCCCAATAGGTTGATGACAACAATAAACTAGGAGAATGGGT < 41bp 0.813634077972381 0.506278437536277 0.42110682 0.09585923 prediction 0.614711280872208 Functional Loss - RPS12 ENSG00000112306 CDS Human protein_coding chr6:133138110 chr6:133138113 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53525 0 0 1 1 2 Cytosol 0.500231643921092 0.500231643762698 0 3.16788373311283e-10 hm5C_site_48877 DeepMRMD:0;iRNA_m5C:3.16788373311283e-10 48878 chr22 21988325 21988325 1 + G T UCEC 21988322 + 21988302 21988342 41 TCTGCTCAGGTGCAGCTGCCCAAGAAGCCACTGGTCCCAGA TCTGCTCAGGTGCAGCTGCCCAATAAGCCACTGGTCCCAGA < 41bp 0.879112086010221 0.571756693123339 0.8585615 0.334475 prediction 0.614710785773763 Functional Loss - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21988322 chr22:21988325 nonsynonymous SNV 0.141 3 24 hm5C_associated_SNPs_53526 0 0 1 0 1 nucleolus 0.500231636155471 0.500231643921093 0.717123 0 hm5C_site_48878 DeepMRMD:0.717123;iRNA_m5C:0 48879 chr9 104170255 104170255 1 + G T UCEC 104170252 + 104170232 104170272 41 ATGAGGAGCCAACTGTAAAACAAGAGATTGAAGAAATTGAG ATGAGGAGCCAACTGTAAAACAATAGATTGAAGAAATTGAG < 41bp 0.850132533174921 0.542777720307604 0.2768671 0.13677484 prediction 0.614709625734635 Functional Loss - ZNF189 ENSG00000136870 CDS Human protein_coding chr9:104170252 chr9:104170255 stopgain 1.000 1 24 hm5C_associated_SNPs_53527 0 0 1 0 1 chromatin 0.500231643921093 0.500231643921092 0 1.77635683940025e-15 hm5C_site_48879 DeepMRMD:0;iRNA_m5C:1.77635683940025e-15 48880 chr18 29055903 29055903 1 + G T UCEC 29055901 + 29055881 29055921 41 TCCCATAGAAGTCCAGCAGACAGGATTTGTTAAGTGCCAGA TCCCATAGAAGTCCAGCAGACATGATTTGTTAAGTGCCAGA < 41bp 0.818866844739286 0.511514251085966 0.3221075 0.13789731 prediction 0.614705187306639 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29055901 chr18:29055903 stopgain 0.002 0 23 hm5C_associated_SNPs_53528 0 0 0 0 0 Nucleus 0.50022935850582 0.500231643917713 0 0 hm5C_site_48880 DeepMRMD:0;iRNA_m5C:0 48881 chr11 308304 308304 1 + G T STAD 308302 + 308282 308322 41 GCTGGGGGTGCCCCACAACCCTGCTCCCCCGATGTCCACCG GCTGGGGGTGCCCCACAACCCTTCTCCCCCGATGTCCACCG < 41bp 0.807344829629273 0.482005639654106 0.16159505 0.07698968 prediction 0.614689659258546 Functional Loss - IFITM2 ENSG00000185201 CDS Human protein_coding chr11:308302 chr11:308304 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_53529 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_48881 DeepMRMD:0;iRNA_m5C:0 48882 chr19 46027374 46027374 1 + G T GBM 46027371 + 46027351 46027391 41 CCAGAATCTGTGCGGAGACCCTGGGAGAAGAACAGCACAAC CCAGAATCTGTGCGGAGACCCTGTGAGAAGAACAGCACAAC < 41bp 0.807342663134333 0.424984328977303 0.67517287 0.08752331 prediction 0.614685326268666 Functional Loss - VASP ENSG00000125753 CDS Human protein_coding chr19:46027371 chr19:46027374 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53530 0 0 1 0 2 Ribosome 0.500231643921419 0.500231734732793 0.35034574 0 hm5C_site_48882 DeepMRMD:0.35034574;iRNA_m5C:0 48883 chr11 55339747 55339747 1 + G T UCEC 55339744 + 55339724 55339764 41 TTGCTAATCATTATTAGTGTCAAGACCAGCCAGGCACTTAA TTGCTAATCATTATTAGTGTCAATACCAGCCAGGCACTTAA < 41bp 0.80733334573042 0.45989577848448 0.22262776 0.059333116 prediction 0.61466669146084 Functional Loss - OR4C16 ENSG00000181935 CDS Human other chr11:55339744 chr11:55339747 nonsynonymous SNV 0.621 1 24 hm5C_associated_SNPs_53531 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_48883 DeepMRMD:0;iRNA_m5C:0 48884 chr14 86088896 86088896 1 + G T LUAD 86088894 + 86088874 86088914 41 GCCAAGGTCCTGAACAAGTCCGGGGGATGGCCGTCAGGGAA GCCAAGGTCCTGAACAAGTCCGTGGGATGGCCGTCAGGGAA < 41bp 0.823875143952059 0.516544428736814 0.9065479 0.3547383 prediction 0.614661430430488 Functional Loss - FLRT2 ENSG00000185070 CDS Human protein_coding chr14:86088894 chr14:86088896 synonymous SNV . 0 23 hm5C_associated_SNPs_53532 0 0 0 0 0 Ribosome 0.50023164392107 0.500231643909784 0.8130958 2.25730545366787e-11 hm5C_site_48884 DeepMRMD:0.8130958;iRNA_m5C:2.25730545366787e-11 48885 chr5 80074609 80074609 1 + G T LUAD 80074606 + 80074586 80074626 41 ACAGACATCTGAATCAGCTCCGGGAGCAGCTAGTCCTTGAC ACAGACATCTGAATCAGCTCCGGTAGCAGCTAGTCCTTGAC < 41bp 0.807328854522973 0.449358376068737 0.8655151 0.27254057 prediction 0.614657709045946 Functional Loss - MSH3 ENSG00000113318 CDS Human protein_coding chr5:80074606 chr5:80074609 stopgain 0.999 1 24 hm5C_associated_SNPs_53533 0 0 1 0 1 chromatin 0.500233063401231 0.500231644623564 0.7310302 2.83755533447838e-06 hm5C_site_48885 DeepMRMD:0.7310302;iRNA_m5C:2.83755533447838e-06 48886 chr12 109865318 109865318 1 + G T LUAD 109865315 + 109865295 109865335 41 TAAGGCATCAGATCAAATACCTGGGGCTGATGGAGCACCTG TAAGGCATCAGATCAAATACCTGTGGCTGATGGAGCACCTG < 41bp 0.8073200442612 0.432164580891997 0.4153745 0.23611021 prediction 0.6146400885224 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109865315 chr12:109865318 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53534 0 0 0 0 2 exosome 0.500231885994794 0.500245510762578 0 0 hm5C_site_48886 DeepMRMD:0;iRNA_m5C:0 48887 chrX 136649747 136649747 1 + G T LUAD 136649744 + 136649724 136649764 41 CAGAACAACCACGTCTGCTACTGGGAGGAGTGCCCCCGGGA CAGAACAACCACGTCTGCTACTGTGAGGAGTGCCCCCGGGA < 41bp 0.87870207209126 0.571388867931812 0.9120158 0.44437784 prediction 0.614626408318896 Functional Loss - ZIC3 ENSG00000156925 CDS Human protein_coding chrX:136649744 chrX:136649747 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_53535 0 0 0 0 0 exosome 0.50023164392117 0.500231643920158 0.8240316 2.02438066310151e-12 hm5C_site_48887 DeepMRMD:0.8240316;iRNA_m5C:2.02438066310151e-12 48888 chr19 31039110 31039110 1 + G T LUSC 31039108 + 31039088 31039128 41 TGCATCTCAGCAGTGGACATCAGGGGTTCTCTCCTCTGGAG TGCATCTCAGCAGTGGACATCATGGGTTCTCTCCTCTGGAG < 41bp 0.852029423125344 0.544720816983311 0.9446014 0.7491499 prediction 0.614617212284067 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:31039108 chr19:31039110 nonsynonymous SNV 0.384 3 23 hm5C_associated_SNPs_53536 0 0 0 0 0 exosome 0.500231644135766 0.500231689423714 0.390903 0 hm5C_site_48888 DeepMRMD:0.390903;iRNA_m5C:0 48889 chr3 141162049 141162049 1 + G T GBM 141162047 + 141162027 141162067 41 CAAAGACATTCTCCATACCACAGGATTCGGATTCAGCCACA CAAAGACATTCTCCATACCACATGATTCGGATTCAGCCACA < 41bp 0.807295158283022 0.498788990036025 0.8907473 0.15202239 prediction 0.614590316566044 Functional Loss - ZBTB38 ENSG00000177311 CDS Human protein_coding chr3:141162047 chr3:141162049 nonsynonymous SNV 0.622 2 23 hm5C_associated_SNPs_53537 0 0 1 0 0 chromatin 0.500231686524981 0.500231643922294 0.7814946 8.52053747557591e-08 hm5C_site_48889 DeepMRMD:0.7814946;iRNA_m5C:8.52053747557591e-08 48890 chr2 233323623 233323623 1 + G T LUSC 233323620 + 233323600 233323640 41 TGCCCCTGTCGTCCGAGACCCACGGAGGCGAAGACGTGGCG TGCCCCTGTCGTCCGAGACCCACTGAGGCGAAGACGTGGCG < 41bp 0.807289590858882 0.444483611772674 0.8907848 0.88948274 prediction 0.614579181717763 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233323620 chr2:233323623 stopgain 0.996 1 24 hm5C_associated_SNPs_53538 0 0 0 0 1 Cytosol 0.500231644372325 0.500231644000453 0.00260411999999999 7.4374417735612e-10 hm5C_site_48890 DeepMRMD:0.00260411999999999;iRNA_m5C:7.4374417735612e-10 White blood cell count (basophil) 48891 chr6 41898440 41898440 1 + G T THCA 41898438 + 41898418 41898458 41 ATCATCCCTGCACTCTCCAACTGGGAGCAAATCCTCTACGT ATCATCCCTGCACTCTCCAACTTGGAGCAAATCCTCTACGT < 41bp 0.829916819468609 0.522628395407858 0.9307454 0.13661748 prediction 0.614576848121501 Functional Loss - BYSL ENSG00000112578 CDS Human protein_coding chr6:41898438 chr6:41898440 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_53539 0 0 1 0 2 Ribosome 0.500231643921313 0.500231643901194 0.8614908 4.02387012599092e-11 hm5C_site_48891 DeepMRMD:0.8614908;iRNA_m5C:4.02387012599092e-11 48892 chr5 113831670 113831670 1 + G T LUSC 113831667 + 113831647 113831687 41 TCGAGAAGAGGATTGTTACCCTGGAAACAAAACTAGAGACT TCGAGAAGAGGATTGTTACCCTGTAAACAAAACTAGAGACT < 41bp 0.846001214944666 0.538713073450906 0.58059704 0.28493506 prediction 0.61457628298752 Functional Loss - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113831667 chr5:113831670 stopgain 1.000 1 24 hm5C_associated_SNPs_53540 0 0 0 0 1 Cytosol 0.500231643921085 0.500231643921092 0.16119408 0 hm5C_site_48892 DeepMRMD:0.16119408;iRNA_m5C:0 Self-reported math ability 48893 chr14 86088683 86088683 1 + G T COAD 86088681 + 86088661 86088701 41 CTTTGACAGCCTTCTCAAATCTGCGTAAGCTGGAACGGCTG CTTTGACAGCCTTCTCAAATCTTCGTAAGCTGGAACGGCTG < 41bp 0.808231962631116 0.500944142708618 0.64646435 0.7490623 prediction 0.614575639844994 Functional Loss - FLRT2 ENSG00000185070 CDS Human protein_coding chr14:86088681 chr14:86088683 synonymous SNV . 0 23 hm5C_associated_SNPs_53541 0 0 0 0 0 Ribosome 0.50023157115195 0.500231643893343 0 0 hm5C_site_48893 DeepMRMD:0;iRNA_m5C:0 48894 chr1 11594530 11594530 1 + G T LUAD 11594527 + 11594507 11594547 41 CAGCAGCTGCAGGCCTTGCCCGAGGGCTCAGTCCTGCGCCG CAGCAGCTGCAGGCCTTGCCCGATGGCTCAGTCCTGCGCCG < 41bp 0.89209252543089 0.584812477492936 0.9340215 0.7584741 prediction 0.614560095875907 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11594527 chr1:11594530 nonsynonymous SNV 0.764 2 24 hm5C_associated_SNPs_53542 0 0 0 0 1 exosome 0.500231644058258 0.500231644166836 0.3510948 0 hm5C_site_48894 DeepMRMD:0.3510948;iRNA_m5C:0 48895 chr1 175054626 175054626 1 + G T rs6664276 175054623 + 175054603 175054643 41 AAGCCGATCCTCCTGAATGGCAGGACAGGTGAGAGCTACTT AAGCCGATCCTCCTGAATGGCAGTACAGGTGAGAGCTACTT < 41bp 0.807272175576269 0.435887073339045 0.52410406 0.16775954 prediction 0.614544351152538 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175054623 chr1:175054626 nonsynonymous SNV 0.993 0 24 hm5C_associated_SNPs_53543 0 0 0 0 2 exosome 0.500231637408731 0.500231643921092 0.04820812 0 hm5C_site_48895 DeepMRMD:0.04820812;iRNA_m5C:0 48896 chr11 103908007 103908007 1 + A T LUAD 103908003 + 103907983 103908023 41 CTGATCCGCAGCATGCTGCTCTCCAACCCCCACGATCTGTC CTGATCCGCAGCATGCTGCTCTCCTACCCCCACGATCTGTC < 41bp 0.81909718928811 0.511825489815591 0.9598954 0.07539573 prediction 0.614543398945039 Functional Loss - DDI1 ENSG00000170967 CDS Human protein_coding chr11:103908003 chr11:103908007 nonsynonymous SNV 0.783 3 25 hm5C_associated_SNPs_53544 0 0 0 0 0 exosome 0.50022977092352 0.500231102481632 0.9197908 0 hm5C_site_48896 DeepMRMD:0.9197908;iRNA_m5C:0 48897 chr1 109772147 109772147 1 + G T THYM 109772144 + 109772124 109772164 41 CAGAGCGGTTTGAGAACCTCCGAGAGATTGGGAACCTTCTG CAGAGCGGTTTGAGAACCTCCGATAGATTGGGAACCTTCTG < 41bp 0.85587929904325 0.548607717529032 0.883205 0.13907999 prediction 0.614543163028436 Functional Loss - SARS ENSG00000031698 CDS Human protein_coding chr1:109772144 chr1:109772147 stopgain 0.988 1 24 hm5C_associated_SNPs_53545 0 0 1 0 1 Ribosome 0.500231667870701 0.500231643921092 0.76641 4.78992179253623e-08 hm5C_site_48897 DeepMRMD:0.76641;iRNA_m5C:4.78992179253623e-08 48898 chr14 22111151 22111151 1 + G T UCEC 22111148 + 22111128 22111168 41 TTCTGCAGACTCCAATGGCTCAGGAACTGGGAATGCAGTGC TTCTGCAGACTCCAATGGCTCAGTAACTGGGAATGCAGTGC < 41bp 0.841716137786959 0.534482077078359 0.82312167 0.11430016 prediction 0.6144681214172 Functional Loss - OR10G2;OR4E2 ENSG00000256553 UTR5 Human TR_V_gene chr14:22111148 chr14:22111151 . . 0 24 hm5C_associated_SNPs_53546 0 0 0 0 1 unknown 0.500231174283769 0.500231643921161 0.64624334 0 hm5C_site_48898 DeepMRMD:0.64624334;iRNA_m5C:0 48899 chr1 1565032 1565032 1 + G T LUAD 1565029 + 1565009 1565049 41 CTCTTCGCAGAGTGCGCGCGCAGGATGAAGAAGTGCATCAG CTCTTCGCAGAGTGCGCGCGCAGTATGAAGAAGTGCATCAG < 41bp 0.860763265832425 0.553529315987126 0.89942145 0.6914214 prediction 0.614467899690597 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1565029 chr1:1565032 nonsynonymous SNV 0.982 2 24 hm5C_associated_SNPs_53547 0 0 1 0 1 Ribosome 0.500200031149044 0.500232491616981 0.4160001 0 hm5C_site_48899 DeepMRMD:0.4160001;iRNA_m5C:0 48900 chr12 6559357 6559357 1 + G T SARC 6559355 + 6559335 6559375 41 CCAGGTCTTCTCGTTCGCAACTGCACCATCACTGCCAATGC CCAGGTCTTCTCGTTCGCAACTTCACCATCACTGCCAATGC < 41bp 0.823570737354163 0.516338678262703 0.11107832 0.052064657 prediction 0.61446411818292 Functional Loss - CD27 ENSG00000139193 CDS Human protein_coding chr12:6559355 chr12:6559357 nonsynonymous SNV 0.961 4 23 hm5C_associated_SNPs_53548 0 0 0 0 1 exosome 0.500231643921093 0.500231643914642 0 1.29021238137739e-11 hm5C_site_48900 DeepMRMD:0;iRNA_m5C:1.29021238137739e-11 48901 chr12 49666563 49666563 1 + G T LUSC 49666560 + 49666540 49666580 41 GCTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCC GCTTGCTTTGAGCCAGCCAACCATATGGTGAAATGTGACCC < 41bp 0.807229157364035 0.441067321283305 0.6157583 0.10149562 prediction 0.61445831472807 Functional Loss - TUBA1C ENSG00000167553 CDS Human protein_coding chr12:49666560 chr12:49666563 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_53549 0 0 0 0 0 Cytosol 0.500231643921088 0.500231643921093 0.2315166 0 hm5C_site_48901 DeepMRMD:0.2315166;iRNA_m5C:0 48902 chr5 23526494 23526494 1 + G T LUAD 23526492 + 23526472 23526512 41 CCAACCAGAGAATCCCTGCCCAGGGGATCAGAATCAGGAGC CCAACCAGAGAATCCCTGCCCATGGGATCAGAATCAGGAGC < 41bp 0.831064458469778 0.523838825802795 0.9536338 0.73952603 prediction 0.614451265333966 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23526492 chr5:23526494 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_53550 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.42821554 0 hm5C_site_48902 DeepMRMD:0.42821554;iRNA_m5C:0 48903 chr3 131100562 131100562 1 + G T rs115718594 131100560 + 131100540 131100580 41 CCTGCAGGGATTGGGCCTTGCAGCACCGCCCAGGCTCGGAT CCTGCAGGGATTGGGCCTTGCATCACCGCCCAGGCTCGGAT < 41bp 0.830238919430114 0.52303220991861 0.1736972 0.14890635 prediction 0.614413419023007 Functional Loss - NUDT16 ENSG00000198585 UTR5 Human protein_coding chr3:131100560 chr3:131100562 . . 0 23 hm5C_associated_SNPs_53551 0 0 0 0 1 Ribosome 0.500231643921089 0.500231643921092 0 0 hm5C_site_48903 DeepMRMD:0;iRNA_m5C:0 48904 chr10 101591389 101591389 1 + G T STAD 101591386 + 101591366 101591406 41 AGGTGAAGTTCTCCATCTACCTGGAGTACCTACAAGCAATA AGGTGAAGTTCTCCATCTACCTGTAGTACCTACAAGCAATA < 41bp 0.807198846016858 0.458355583526331 0.45003933 0.13669208 prediction 0.614397692033716 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101591386 chr10:101591389 stopgain 0.265 0 24 hm5C_associated_SNPs_53552 0 0 1 0 1 Endoplasmic reticulum 0.500229884960986 0.500231727431888 0 0 hm5C_site_48904 DeepMRMD:0;iRNA_m5C:0 48905 chr13 111365642 111365642 1 + C A rs565116451 111365644 - 111365624 111365664 41 ACCTCCGAGACCATGGTACACAGCAACTACCGCAACTCGCT ACCTCCGAGACCATGGTACACATCAACTACCGCAACTCGCT < 41bp 0.807909898898876 0.50071201833186 0.13021854 0.081350476 prediction 0.614395761134032 Functional Loss - ING1 ENSG00000153487 UTR5 Human protein_coding chr13:111365644 chr13:111365642 . . 0 23 hm5C_associated_SNPs_53553 0 0 0 0 0 Endoplasmic reticulum 0.500231643921221 0.500231643921094 0 2.54019028034236e-13 hm5C_site_48905 DeepMRMD:0;iRNA_m5C:2.54019028034236e-13 48906 chr1 200842891 200842891 1 + G T LUSC 200842888 + 200842868 200842908 41 GTGGGTCGGGCCCGGAGGAACTCGCTGCGCATCATCTTCGC GTGGGTCGGGCCCGGAGGAACTCTCTGCGCATCATCTTCGC < 41bp 0.80719127434839 0.459267675706804 0.31623864 0.18917742 prediction 0.61438254869678 Functional Loss - GPR25 ENSG00000170128 CDS Human protein_coding chr1:200842888 chr1:200842891 synonymous SNV . 0 24 hm5C_associated_SNPs_53554 0 0 0 0 0 exosome 0.500231643624012 0.50023168881904 0 0 hm5C_site_48906 DeepMRMD:0;iRNA_m5C:0 48907 chr1 6681588 6681588 1 + A C UCEC 6681584 + 6681564 6681604 41 ACCTGTCCTGTGCGAAAATCCGGAAATCCAATGTTCCAGAA ACCTGTCCTGTGCGAAAATCCGGACATCCAATGTTCCAGAA < 41bp 0.883077689767003 0.575897091990844 0.59405386 0.36787617 prediction 0.614361195552318 Functional Loss - PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681584 chr1:6681588 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_53555 0 0 1 0 0 cytosol 0.500231643920917 0.500231643921171 0.18810772 0 hm5C_site_48907 DeepMRMD:0.18810772;iRNA_m5C:0 48908 chr4 71347067 71347067 1 + A T rs41419748 71347063 + 71347043 71347083 41 ACCTTCTGCAACTACACAAGCTCCACCATCTTCCTCAGCTC ACCTTCTGCAACTACACAAGCTCCTCCATCTTCCTCAGCTC < 41bp 0.815940722265812 0.50876512978255 0.08771539 0.034731895 prediction 0.614351184966523 Functional Loss - MUC7 ENSG00000171195 CDS Human protein_coding chr4:71347063 chr4:71347067 synonymous SNV . 0 25 hm5C_associated_SNPs_53556 0 0 0 0 0 unknown 0.500231652173187 0.500231654038164 0 0 hm5C_site_48908 DeepMRMD:0;iRNA_m5C:0 48909 chr4 115544698 115544698 1 + A C UCEC 115544694 + 115544674 115544714 41 CCAAATATGAAAGGATAATGCAGAAGTACAACCTGCTGCCA CCAAATATGAAAGGATAATGCAGACGTACAACCTGCTGCCA < 41bp 0.89096085434256 0.583796745347545 0.65116364 0.58283955 prediction 0.614328217990028 Functional Loss - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544694 chr4:115544698 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53557 0 0 0 2 0 Ribosome 0.500231643920629 0.500231643920484 0.13664818 2.89102075612391e-13 hm5C_site_48909 DeepMRMD:0.13664818;iRNA_m5C:2.89102075612391e-13 48910 chr6 28121309 28121309 1 + G T LUAD 28121307 + 28121287 28121327 41 AGTGTGGGAAGGCTTTCAGTCAGAGTGCGGGCCTTATTCTG AGTGTGGGAAGGCTTTCAGTCATAGTGCGGGCCTTATTCTG < 41bp 0.807161289644554 0.488348759240761 0.8847382 0.19022632 prediction 0.614322579289108 Functional Loss - ZKSCAN8 ENSG00000198315 CDS Human protein_coding chr6:28121307 chr6:28121309 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53558 0 0 1 0 0 chromatin 0.500231643921194 0.500231250757723 0.7694764 7.86326942225912e-07 hm5C_site_48910 DeepMRMD:0.7694764;iRNA_m5C:7.86326942225912e-07 48911 chr19 55255490 55255490 1 + A C rs595008 55255486 + 55255466 55255506 41 CTTCGGCTCTTTCCGTGACTCTCCATACGAGTGGTCAAACT CTTCGGCTCTTTCCGTGACTCTCCCTACGAGTGGTCAAACT < 41bp 0.807150293691038 0.392476448518535 0.97963184 0.204851 prediction 0.614300587382076 Functional Loss - KIR2DL3 ENSG00000243772 CDS Human protein_coding chr19:55255486 chr19:55255490 synonymous SNV . 0 25 hm5C_associated_SNPs_53559 0 0 0 0 1 exosome 0.500231308057203 0.500232067432205 0.95926368 0 hm5C_site_48911 DeepMRMD:0.95926368;iRNA_m5C:0 48912 chr7 26396717 26396717 1 + G T MESO 26396714 + 26396694 26396734 41 AGACAGCCTAAGCTGCCCTACAGGAGCTTAGCGTCTGCTAG AGACAGCCTAAGCTGCCCTACAGTAGCTTAGCGTCTGCTAG < 41bp 0.807134635285638 0.447571489996853 0.3870344 0.05262339 prediction 0.614269270571276 Functional Loss - SNX10 ENSG00000086300 CDS Human protein_coding chr7:26396714 chr7:26396717 nonsynonymous SNV 0.024 1 24 hm5C_associated_SNPs_53560 0 0 0 0 2 membrane 0.500231643921085 0.500231643867056 0 1.08057340852952e-10 hm5C_site_48912 DeepMRMD:0;iRNA_m5C:1.08057340852952e-10 48913 chr12 101017881 101017881 1 + G T UCEC 101017878 + 101017858 101017898 41 ACCTTGTATATCTGAGTCACCGAGAAAATGTATTTCATCCC ACCTTGTATATCTGAGTCACCGATAAAATGTATTTCATCCC < 41bp 0.807124083292495 0.445817908763392 0.31998217 0.0734283 prediction 0.61424816658499 Functional Loss - GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101017878 chr12:101017881 nonsynonymous SNV 0.243 4 24 hm5C_associated_SNPs_53561 0 0 1 0 0 Cytosol 0.500231643239758 0.500231642130421 0 2.2186734671692e-09 hm5C_site_48913 DeepMRMD:0;iRNA_m5C:2.2186734671692e-09 48914 chr12 26383798 26383798 1 + G T COAD 26383796 + 26383776 26383816 41 CCCTCCTCGGAGCCGCTCAGCAGGACCTTTGTTTACCGGGA CCCTCCTCGGAGCCGCTCAGCATGACCTTTGTTTACCGGGA < 41bp 0.807111656411472 0.487223318568736 0.8264597 0.30415946 prediction 0.614223312822945 Functional Loss - SSPN ENSG00000123096 CDS Human protein_coding chr12:26383796 chr12:26383798 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53562 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.6529194 0 hm5C_site_48914 DeepMRMD:0.6529194;iRNA_m5C:0 48915 chr5 5235246 5235246 1 + G T UCEC 5235244 + 5235224 5235264 41 GCTCAGTGTGCCGAGCACAACAGCAGACGATTCAGAGGGCG GCTCAGTGTGCCGAGCACAACATCAGACGATTCAGAGGGCG < 41bp 0.8379042218419 0.530796891742786 0.7737483 0.29246956 prediction 0.614214660198227 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5235244 chr5:5235246 nonsynonymous SNV 0.005 4 23 hm5C_associated_SNPs_53563 0 0 0 0 1 exosome 0.500231643884047 0.50023101509628 0.5474966 1.25757553415262e-06 hm5C_site_48915 DeepMRMD:0.5474966;iRNA_m5C:1.25757553415262e-06 48916 chr19 6919665 6919665 1 + G T LUSC 6919663 + 6919643 6919683 41 TGACCACCTCTGAGATCAAGCTGAAGATGAATTCTCGAGTC TGACCACCTCTGAGATCAAGCTTAAGATGAATTCTCGAGTC < 41bp 0.807105820852314 0.488196932624477 0.2200205 0.07705507 prediction 0.614211641704628 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6919663 chr19:6919665 synonymous SNV . 0 23 hm5C_associated_SNPs_53564 0 0 0 0 1 exosome 0.500231606683187 0.500227935557371 0 7.34225163312452e-06 hm5C_site_48916 DeepMRMD:0;iRNA_m5C:7.34225163312452e-06 48917 chr12 53452954 53452954 1 + G T LUAD 53452952 + 53452932 53452972 41 CCACCCCCCATGCTCTCTGTCAGCAGCGACTCAGGCCATTC CCACCCCCCATGCTCTCTGTCATCAGCGACTCAGGCCATTC < 41bp 0.807099035344548 0.484809574238419 0.41816938 0.17239517 prediction 0.614198070689096 Functional Loss - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53452952 chr12:53452954 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_53565 0 0 0 0 0 cytosol 0.500231643921094 0.500231643921093 0 3.77475828372553e-15 hm5C_site_48917 DeepMRMD:0;iRNA_m5C:3.77475828372553e-15 48918 chr5 140031363 140031363 1 + G T OV 140031361 + 140031341 140031381 41 CCCCAGGGCTGCACCTACCTCTGCACCACCTTCTAAGTCAC CCCCAGGGCTGCACCTACCTCTTCACCACCTTCTAAGTCAC < 41bp 0.817974326974056 0.510876523552321 0.027515203 0.026267946 prediction 0.614195606843468 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140031361 chr5:140031363 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_53566 0 0 1 0 2 Cytosol 0.500231651832008 0.500231645069225 0 1.35255648903154e-08 hm5C_site_48918 DeepMRMD:0;iRNA_m5C:1.35255648903154e-08 48919 chr6 132891991 132891991 1 + G T LUAD 132891989 + 132891969 132892009 41 CAGGTGTCTATGACGATGGGCTGGAGGAATTATCTGATGCC CAGGTGTCTATGACGATGGGCTTGAGGAATTATCTGATGCC < 41bp 0.807543709840193 0.500462037398715 0.2906182 0.10962334 prediction 0.614163344882956 Functional Loss - TAAR6 ENSG00000146383 CDS Human protein_coding chr6:132891989 chr6:132891991 synonymous SNV . 0 23 hm5C_associated_SNPs_53567 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_48919 DeepMRMD:0;iRNA_m5C:0 48920 chr13 113088832 113088832 1 + G T COAD 113088830 + 113088810 113088850 41 CATAAAGAGCAGCAGAGGACCAGCGCACAGAGGAGGAGCCA CATAAAGAGCAGCAGAGGACCATCGCACAGAGGAGGAGCCA < 41bp 0.814293341409806 0.507219708348603 0.15938962 0.15088323 prediction 0.614147266122405 Functional Loss - SPACA7 ENSG00000153498 CDS Human protein_coding chr13:113088830 chr13:113088832 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_53568 0 0 0 0 1 unknown 0.500231772621695 0.500232194539176 0 0 hm5C_site_48920 DeepMRMD:0;iRNA_m5C:0 48921 chr12 4835995 4835995 1 + G T BLCA 4835993 + 4835973 4836013 41 ATCCCCGACACGCGAGACTACAGGTGGGATGAACCAGGCTT ATCCCCGACACGCGAGACTACATGTGGGATGAACCAGGCTT < 41bp 0.807070750605339 0.470541457867597 0.5875581 0.3998708 prediction 0.614141501210677 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4835993 chr12:4835995 nonsynonymous SNV 0.442 4 23 hm5C_associated_SNPs_53569 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0.1751162 0 hm5C_site_48921 DeepMRMD:0.1751162;iRNA_m5C:0 48922 chr1 113266731 113266731 1 + G T UCEC 113266729 + 113266709 113266749 41 GACCTGTCGGGATGGAGCTGCAGCAGTGGACACAAAGTCAA GACCTGTCGGGATGGAGCTGCATCAGTGGACACAAAGTCAA < 41bp 0.819350971940763 0.512284298170047 0.23605803 0.18370652 prediction 0.614133347541432 Functional Loss - FAM19A3 ENSG00000184599 CDS Human protein_coding chr1:113266729 chr1:113266731 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53570 0 0 0 1 2 exosome 0.500248063915076 0.500231651062387 0 3.28257053787695e-05 hm5C_site_48922 DeepMRMD:0;iRNA_m5C:3.28257053787695e-05 48923 chr11 14287253 14287253 1 + G T UCEC 14287251 + 14287231 14287271 41 TAGCAAGGGTACGAGTTCCCCAGGGCTGCACTCTAGATTCC TAGCAAGGGTACGAGTTCCCCATGGCTGCACTCTAGATTCC < 41bp 0.807063107595617 0.489186051215428 0.8953719 0.24491921 prediction 0.614126215191233 Functional Loss - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14287251 chr11:14287253 . . 0 23 hm5C_associated_SNPs_53571 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921095 0.7907438 0 hm5C_site_48923 DeepMRMD:0.7907438;iRNA_m5C:0 48924 chr1 179054987 179054987 1 + A C BLCA 179054983 + 179054963 179055003 41 GACTGTGTCAGGATGTTCATCGCCACGTTCCACTTTCCTCA GACTGTGTCAGGATGTTCATCGCCCCGTTCCACTTTCCTCA < 41bp 0.807046819674868 0.399108622099392 0.15880111 0.10609293 prediction 0.614093639349736 Functional Loss - TOR3A ENSG00000186283 CDS Human protein_coding chr1:179054983 chr1:179054987 nonsynonymous SNV 0.513 0 25 hm5C_associated_SNPs_53572 0 0 1 0 1 Ribosome 0.50023165954453 0.500231643921091 0 3.12468784180453e-08 hm5C_site_48924 DeepMRMD:0;iRNA_m5C:3.12468784180453e-08 48925 chr19 44652983 44652983 1 + G T LUAD 44652981 + 44652961 44653001 41 CTGAGGAGGAGCTGGGGCTGCTGGACCCTGTCCAGAGGAAT CTGAGGAGGAGCTGGGGCTGCTTGACCCTGTCCAGAGGAAT < 41bp 0.824459965316585 0.517418758482706 0.21813175 0.15841344 prediction 0.614082413667757 Functional Loss - ZNF234 ENSG00000263002 CDS Human protein_coding chr19:44652981 chr19:44652983 synonymous SNV . 0 23 hm5C_associated_SNPs_53573 0 0 1 0 2 exosome 0.500231643927158 0.50023164392555 0 3.21609405773415e-12 hm5C_site_48925 DeepMRMD:0;iRNA_m5C:3.21609405773415e-12 48926 chr6 34789564 34789564 1 + G T SARC 34789561 + 34789541 34789581 41 GCCCACCTGGTTAGCCATCACTCGGGTCTACTGCAACAGGG GCCCACCTGGTTAGCCATCACTCTGGTCTACTGCAACAGGG < 41bp 0.807014170010746 0.44476614015785 0.22232315 0.2984854 prediction 0.614028340021493 Functional Loss - UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34789561 chr6:34789564 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_53574 0 0 1 0 1 Ribosome 0.500231643921249 0.500231643810713 0 2.2107071728783e-10 hm5C_site_48926 DeepMRMD:0;iRNA_m5C:2.2107071728783e-10 48927 chr2 27528685 27528685 1 + G T PAAD 27528683 + 27528663 27528703 41 CACAAATGGCGCTGTATCTCCAGGTGGGCTCTAGGGGAGGG CACAAATGGCGCTGTATCTCCATGTGGGCTCTAGGGGAGGG < 41bp 0.828929095852931 0.521918184027066 0.93813497 0.89131296 prediction 0.61402182365173 Functional Loss - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27528683 chr2:27528685 nonsynonymous SNV 0.955 2 23 hm5C_associated_SNPs_53575 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643924414 0.0936440199999999 0 hm5C_site_48927 DeepMRMD:0.0936440199999999;iRNA_m5C:0 48928 chr1 15443426 15443426 1 + C A rs72640734 15443429 - 15443409 15443449 41 TTTAAACCAAAAGAGGCATTCGCGGTTGCCCGTGTTGCCTC TTTAAACCAAAAGAGGCATTCGCTGTTGCCCGTGTTGCCTC < 41bp 0.807005730687052 0.463191702310105 0.8365718 0.09257877 prediction 0.614011461374103 Functional Loss - TMEM51-AS1 ENSG00000175147 ncRNA_exonic Human antisense chr1:15443429 chr1:15443426 . . 0 24 hm5C_associated_SNPs_53576 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.6731436 0 hm5C_site_48928 DeepMRMD:0.6731436;iRNA_m5C:0 48929 chrX 18622162 18622162 1 + G T HNSC 18622159 + 18622139 18622179 41 CTTCCTAAATGGAAACCTTGCTGGAGCTAGTCTTAGTCCAC CTTCCTAAATGGAAACCTTGCTGTAGCTAGTCTTAGTCCAC < 41bp 0.806986323106165 0.446411891619797 0.40627813 0.0717563 prediction 0.613972646212329 Functional Loss - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18622159 chrX:18622162 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_53577 0 0 0 0 0 Endoplasmic reticulum 0.500231643921134 0.500231648151206 0 0 hm5C_site_48929 DeepMRMD:0;iRNA_m5C:0 48930 chrX 18622161 18622161 1 + G T OV 18622159 + 18622139 18622179 41 CTTCCTAAATGGAAACCTTGCTGGAGCTAGTCTTAGTCCAC CTTCCTAAATGGAAACCTTGCTTGAGCTAGTCTTAGTCCAC < 41bp 0.806986323106165 0.491649482610428 0.40627813 0.04038781 prediction 0.613972646212329 Functional Loss - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18622159 chrX:18622161 stopgain 0.997 1 23 hm5C_associated_SNPs_53578 0 0 0 0 0 Endoplasmic reticulum 0.500231643921134 0.500231643921111 0 4.70734562441066e-14 hm5C_site_48930 DeepMRMD:0;iRNA_m5C:4.70734562441066e-14 48931 chr9 133346227 133346227 1 + G T THCA 133346224 + 133346204 133346244 41 CTGTCTCTTTCCTGCAGCAACACGGGATTCCCATCCCGGTC CTGTCTCTTTCCTGCAGCAACACTGGATTCCCATCCCGGTC < 41bp 0.806980385644868 0.416662989046378 0.48099864 0.18112987 prediction 0.613960771289736 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133346224 chr9:133346227 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_53579 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921093 0 0 hm5C_site_48931 DeepMRMD:0;iRNA_m5C:0 48932 chr1 116943622 116943622 1 + G T STAD 116943620 + 116943600 116943640 41 ATGTGGAAGACAGCTACGGGCAGCAGTGGGTGAGTGGGCAC ATGTGGAAGACAGCTACGGGCATCAGTGGGTGAGTGGGCAC < 41bp 0.806974714744908 0.495667155999362 0.30754444 0.14371607 prediction 0.613949429489816 Functional Loss - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116943620 chr1:116943622 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_53580 0 0 1 0 1 Nucleus 0.500231643918816 0.500231643914142 0 9.34741173352904e-12 hm5C_site_48932 DeepMRMD:0;iRNA_m5C:9.34741173352904e-12 48933 chr19 16339708 16339708 1 + G T SARC 16339706 + 16339686 16339726 41 GTTAAGTGGGTCCCCGAGAACAGCGAGATCGTGTGGTCCAT GTTAAGTGGGTCCCCGAGAACATCGAGATCGTGTGGTCCAT < 41bp 0.806970388086177 0.48636774003012 0.44500813 0.13715467 prediction 0.613940776172355 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16339706 chr19:16339708 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_53581 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643920918 0 3.49054118942149e-13 hm5C_site_48933 DeepMRMD:0;iRNA_m5C:3.49054118942149e-13 48934 chr19 35551551 35551551 1 + G T HNSC 35551548 + 35551528 35551568 41 TAGGCGGAACCGGGTCCTGTCCCGATGGCGAGTGTTTGCCG TAGGCGGAACCGGGTCCTGTCCCTATGGCGAGTGTTTGCCG < 41bp 0.806970029272338 0.436317146906676 0.17796692 0.16672888 prediction 0.613940058544675 Functional Loss - HPN ENSG00000105707 CDS Human protein_coding chr19:35551548 chr19:35551551 nonsynonymous SNV 0.989 2 24 hm5C_associated_SNPs_53582 0 0 1 0 1 cytosol 0.500231643919628 0.500231643909537 0 2.01820782308459e-11 hm5C_site_48934 DeepMRMD:0;iRNA_m5C:2.01820782308459e-11 48935 chr6 1313599 1313599 1 + G T LUAD 1313596 + 1313576 1313616 41 CGCAAGCGCCTCAGCCACCGCGCGCCGGTCCCCGCGCCCGG CGCAAGCGCCTCAGCCACCGCGCTCCGGTCCCCGCGCCCGG < 41bp 0.806968618299185 0.493358540873498 0.52743965 0.38532788 prediction 0.61393723659837 Functional Loss - FOXQ1 ENSG00000164379 CDS Human protein_coding chr6:1313596 chr6:1313599 synonymous SNV . 0 24 hm5C_associated_SNPs_53583 0 0 1 0 0 exosome 0.500231643914181 0.500231643921078 0.0548793000000001 0 hm5C_site_48935 DeepMRMD:0.0548793000000001;iRNA_m5C:0 48936 chr6 26156631 26156631 1 + G T STAD 26156629 + 26156609 26156649 41 TGCCTTCAACATGTCCGAGACTGCGCCTGCCGCGCCCGCTG TGCCTTCAACATGTCCGAGACTTCGCCTGCCGCGCCCGCTG < 41bp 0.807971917685775 0.501007514018975 0.43455684 0.30940142 prediction 0.6139288073336 Functional Loss - HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26156629 chr6:26156631 nonsynonymous SNV 0.924 2 23 hm5C_associated_SNPs_53584 0 0 1 0 0 Ribosome 0.500232500808881 0.500231784878869 0 1.43186002565798e-06 hm5C_site_48936 DeepMRMD:0;iRNA_m5C:1.43186002565798e-06 48937 chr13 108922545 108922545 1 + G T UCEC 108922543 + 108922523 108922563 41 GGAGCAGGAGCCCCCAAGGCCGGCCTGGAGGAAGCTCCAGC GGAGCAGGAGCCCCCAAGGCCGTCCTGGAGGAAGCTCCAGC < 41bp 0.815957370879974 0.50901216870921 0.37292385 0.3340286 prediction 0.613890404341527 Functional Loss - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108922543 chr13:108922545 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_53585 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921093 0 0 hm5C_site_48937 DeepMRMD:0;iRNA_m5C:0 48938 chr11 58894356 58894356 1 + G T rs561125707 58894353 + 58894333 58894373 41 ACCATTCAAGCCAGCAATCTCATGACTGGGTATATGTCCAA ACCATTCAAGCCAGCAATCTCATTACTGGGTATATGTCCAA < 41bp 0.807020317449396 0.500084490599607 0.071044534 0.03867486 prediction 0.613871653699579 Functional Loss - FAM111B ENSG00000189057 UTR3 Human protein_coding chr11:58894353 chr11:58894356 . . 0 24 hm5C_associated_SNPs_53586 0 0 1 0 0 Cytosol 0.500231643920979 0.500231643921092 0 0 hm5C_site_48938 DeepMRMD:0;iRNA_m5C:0 48939 chr1 155178728 155178728 1 + G T STAD 155178725 + 155178705 155178745 41 GGCGCACAAGACCCCGCTCTCCAGAGCCTGCCGCGCCTTCA GGCGCACAAGACCCCGCTCTCCATAGCCTGCCGCGCCTTCA < 41bp 0.880875396894295 0.573941186979036 0.9355899 0.7227926 prediction 0.613868419830519 Functional Loss - MTX1 ENSG00000173171 CDS Human protein_coding chr1:155178725 chr1:155178728 stopgain 0.000 0 24 hm5C_associated_SNPs_53587 0 0 0 0 0 Ribosome 0.500231643920744 0.500147286683769 0.4255946 0.000168714473949949 hm5C_site_48939 DeepMRMD:0.4255946;iRNA_m5C:0.000168714473949949 48940 chr20 2845684 2845684 1 + A C STAD 2845680 + 2845660 2845700 41 GCCGATGCCTTCTACAAGGCCAAGAATGAGTTTGCAGCCAA GCCGATGCCTTCTACAAGGCCAAGCATGAGTTTGCAGCCAA < 41bp 0.806910052643488 0.41706378446176 0.190485 0.15003163 prediction 0.613820105286976 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2845680 chr20:2845684 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_53588 0 0 0 0 1 chromatin 0.500231640222442 0.500230973198992 0 1.33404689872663e-06 hm5C_site_48940 DeepMRMD:0;iRNA_m5C:1.33404689872663e-06 48941 chr12 13214598 13214598 1 + G T UCEC 13214595 + 13214575 13214615 41 GTCTTCTCCCTGAGGAGGCTCGAGATATCACATGTTTGGAG GTCTTCTCCCTGAGGAGGCTCGATATATCACATGTTTGGAG < 41bp 0.806905436922135 0.427145513067786 0.76489484 0.13297287 prediction 0.61381087384427 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13214595 chr12:13214598 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_53589 0 0 0 0 2 Nucleus 0.500231644492379 0.500231643921092 0.52978968 1.1425735912951e-09 hm5C_site_48941 DeepMRMD:0.52978968;iRNA_m5C:1.1425735912951e-09 48942 chr19 56669923 56669923 1 + G T LUSC 56669920 + 56669900 56669940 41 GGGTGCCTCAGGATGTGACGCAGGGCCCTGGGGCCACAGGT GGGTGCCTCAGGATGTGACGCAGTGCCCTGGGGCCACAGGT < 41bp 0.806887571578718 0.420084581028415 0.88620573 0.29183924 prediction 0.613775143157436 Functional Loss - ZNF444 ENSG00000167685 CDS Human protein_coding chr19:56669920 chr19:56669923 nonsynonymous SNV 0.022 3 24 hm5C_associated_SNPs_53590 0 0 1 0 2 Cytosol 0.500231653762934 0.5002361993554 0.77241146 0 hm5C_site_48942 DeepMRMD:0.77241146;iRNA_m5C:0 48943 chr11 67051382 67051382 1 + A T HNSC 67051378 + 67051358 67051398 41 GTGAACGCGGCCGACGCCTTCGACATTGGCTCCTTCGATGA GTGAACGCGGCCGACGCCTTCGACTTTGGCTCCTTCGATGA < 41bp 0.819158419198245 0.512279408808881 0.3556357 0.38649902 prediction 0.613758020778729 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67051378 chr11:67051382 nonsynonymous SNV 0.984 4 25 hm5C_associated_SNPs_53591 0 0 1 0 2 chromatin 0.500231643832389 0.500231643920985 0 0 hm5C_site_48943 DeepMRMD:0;iRNA_m5C:0 48944 chr20 17462643 17462643 1 + G T UCEC 17462640 + 17462620 17462660 41 CAGTCCAAGTTGGCCATGTCCAAGAAAGAGGAGCTGGAGGA CAGTCCAAGTTGGCCATGTCCAATAAAGAGGAGCTGGAGGA < 41bp 0.806871241823207 0.447985921331589 0.39613557 0.22050962 prediction 0.613742483646414 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17462640 chr20:17462643 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53592 0 0 0 0 0 Endoplasmic reticulum 0.500231644218547 0.500231643809892 0 8.17309553369228e-10 hm5C_site_48944 DeepMRMD:0;iRNA_m5C:8.17309553369228e-10 48945 chr10 106125686 106125686 1 + G T UCEC 106125684 + 106125664 106125704 41 AGACATGGACAGCAGGCAGACAGAAATAAAAGCCCTGCAGC AGACATGGACAGCAGGCAGACATAAATAAAAGCCCTGCAGC < 41bp 0.841238040333487 0.534371782015285 0.67994523 0.16493344 prediction 0.613732516636405 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106125684 chr10:106125686 stopgain 0.263 1 23 hm5C_associated_SNPs_53593 0 0 0 0 1 nucleolus 0.500231643696062 0.500231644000617 0.35989046 0 hm5C_site_48945 DeepMRMD:0.35989046;iRNA_m5C:0 48946 chr15 23811207 23811207 1 + G T UCEC 23811205 + 23811185 23811225 41 CCGTTGCCAAGCCGAAGCAGCGGCATTTGGACAAAGCAGAT CCGTTGCCAAGCCGAAGCAGCGTCATTTGGACAAAGCAGAT < 41bp 0.822735737094749 0.515869974254317 0.069378436 0.046830237 prediction 0.613731525680865 Functional Loss - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811205 chr15:23811207 nonsynonymous SNV 0.100 4 23 hm5C_associated_SNPs_53594 0 0 1 0 1 chromatin 0.500231647957562 0.500231645430713 0 5.05369746051088e-09 hm5C_site_48946 DeepMRMD:0;iRNA_m5C:5.05369746051088e-09 48947 chr2 231090581 231090581 1 + G T LUAD 231090578 + 231090558 231090598 41 TCATGGCCCAGCAGGGCCAGCAGGGGCAGATGGCAAGTGGA TCATGGCCCAGCAGGGCCAGCAGTGGCAGATGGCAAGTGGA < 41bp 0.80684581969009 0.443939853552495 0.8953178 0.29957512 prediction 0.613691639380181 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231090578 chr2:231090581 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_53595 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.7906356 0 hm5C_site_48947 DeepMRMD:0.7906356;iRNA_m5C:0 48948 chr1 40735679 40735679 1 + G T READ 40735676 + 40735656 40735696 41 TTCTTCATGAAAGATGCAATCAAGAAATTTGTTGTGACTCA TTCTTCATGAAAGATGCAATCAATAAATTTGTTGTGACTCA < 41bp 0.855295658094151 0.548454610935944 0.70318776 0.21071935 prediction 0.613682094316413 Functional Loss - ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40735676 chr1:40735679 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_53596 0 0 1 0 1 Endoplasmic reticulum 0.50027585094772 0.500231668544178 0.40637552 8.83648070832965e-05 hm5C_site_48948 DeepMRMD:0.40637552;iRNA_m5C:8.83648070832965e-05 48949 chr13 30054429 30054429 1 + G T SKCM 30054426 + 30054406 30054446 41 GAGCGGCTGCAGCTGCAATTCGAGGCGGAAATGGCGCGCCT GAGCGGCTGCAGCTGCAATTCGATGCGGAAATGGCGCGCCT < 41bp 0.872212582710728 0.565377739068374 0.9265338 0.53888637 prediction 0.613669687284709 Functional Loss - MTUS2 ENSG00000132938 CDS Human protein_coding chr13:30054426 chr13:30054429 nonsynonymous SNV 0.713 0 24 hm5C_associated_SNPs_53597 0 0 0 0 1 nucleus 0.500231643737638 0.500231644037468 0.77529486 0 hm5C_site_48949 DeepMRMD:0.77529486;iRNA_m5C:0 48950 chr2 71188132 71188132 1 + A T KIRP 71188128 + 71188108 71188148 41 GATTACCATGACGACAACTTCGCCATCGTCTTTGCAGCCAT GATTACCATGACGACAACTTCGCCTTCGTCTTTGCAGCCAT < 41bp 0.839278202230763 0.532445919665587 0.30029976 0.06749076 prediction 0.613664565130352 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71188128 chr2:71188132 nonsynonymous SNV 0.919 5 25 hm5C_associated_SNPs_53598 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_48950 DeepMRMD:0;iRNA_m5C:0 48951 chr1 160160589 160160589 1 + G T SARC 160160587 + 160160567 160160607 41 CCAGAGCTGTGCCGGGTCTGCGGCTGGCACTGCTGTTGCTG CCAGAGCTGTGCCGGGTCTGCGTCTGGCACTGCTGTTGCTG < 41bp 0.806830301328412 0.478837241934847 0.42025346 0.14535192 prediction 0.613660602656823 Functional Loss - CASQ1 ENSG00000143318 CDS Human protein_coding chr1:160160587 chr1:160160589 synonymous SNV . 0 23 hm5C_associated_SNPs_53599 0 0 0 0 0 exosome 0.500231645156648 0.500229625600191 0 4.0391129130235e-06 hm5C_site_48951 DeepMRMD:0;iRNA_m5C:4.0391129130235e-06 48952 chr15 80987675 80987675 1 + G T rs117959127 80987672 + 80987652 80987692 41 GGCTGCAGCCGCCCTCCGCGCTCGCCTGCCAGCTCCCTCGC GGCTGCAGCCGCCCTCCGCGCTCTCCTGCCAGCTCCCTCGC < 41bp 0.830712117747553 0.523883269724208 0.12444839 0.22147733 prediction 0.613657696046691 Functional Loss - ABHD17C ENSG00000136379 UTR5 Human protein_coding chr15:80987672 chr15:80987675 . . 0 24 hm5C_associated_SNPs_53600 0 0 1 0 0 exosome 0.500231643921093 0.500231643921096 0 0 hm5C_site_48952 DeepMRMD:0;iRNA_m5C:0 48953 chr19 549650 549650 1 + G T UCEC 549648 + 549628 549668 41 AGGGTGACTCGGGCGGGCCCCTGGTGTGTGGCAAAGGCCGG AGGGTGACTCGGGCGGGCCCCTTGTGTGTGGCAAAGGCCGG < 41bp 0.823649532524543 0.516821219083483 0.8638967 0.3005932 prediction 0.613656626882119 Functional Loss - GZMM ENSG00000197540 CDS Human protein_coding chr19:549648 chr19:549650 synonymous SNV . 0 23 hm5C_associated_SNPs_53601 0 0 0 0 0 exosome 0.500231643923028 0.500231643921093 0.7277934 3.87045950844822e-12 hm5C_site_48953 DeepMRMD:0.7277934;iRNA_m5C:3.87045950844822e-12 48954 chr19 58551855 58551855 1 + G T LUAD 58551852 + 58551832 58551872 41 GACTCGGTCGAACCCCAGGACTGGAGTTTCGGTGAGGAGGA GACTCGGTCGAACCCCAGGACTGTAGTTTCGGTGAGGAGGA < 41bp 0.806827467347207 0.428160230719457 0.25465432 0.14952919 prediction 0.613654934694415 Functional Loss - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58551852 chr19:58551855 nonsynonymous SNV 0.916 0 24 hm5C_associated_SNPs_53602 0 0 0 0 2 exosome 0.500231644043449 0.500231643921093 0 2.44712472508013e-10 hm5C_site_48954 DeepMRMD:0;iRNA_m5C:2.44712472508013e-10 48955 chr7 148844735 148844735 1 + G T rs139320278 148844733 + 148844713 148844753 41 CAGGGCCGGGTCGGCGCCGCCTGTGGAGAGGACCCGGCGGC CAGGGCCGGGTCGGCGCCGCCTTTGGAGAGGACCCGGCGGC < 41bp 0.806819380037089 0.490871299846559 0.37116873 0.2632673 prediction 0.613638760074177 Functional Loss - ZNF398 ENSG00000197024 UTR5 Human protein_coding chr7:148844733 chr7:148844735 . . 0 23 hm5C_associated_SNPs_53603 0 0 1 0 0 chromatin 0.500231648601667 0.500231643921163 0 9.36100774673321e-09 hm5C_site_48955 DeepMRMD:0;iRNA_m5C:9.36100774673321e-09 48956 chr12 130648002 130648002 1 + A C LIHC 130647998 + 130647978 130648018 41 TGTTCCCGCCGCTGTTCCGGCCGCAGCGGCCCCACAGCGCG TGTTCCCGCCGCTGTTCCGGCCGCCGCGGCCCCACAGCGCG < 41bp 0.806802550885388 0.453101328482428 0.54302204 0.51235265 prediction 0.613605101770775 Functional Loss - FZD10 ENSG00000111432 CDS Human protein_coding chr12:130647998 chr12:130648002 nonsynonymous SNV 0.977 0 25 hm5C_associated_SNPs_53604 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.06133878 0 hm5C_site_48956 DeepMRMD:0.06133878;iRNA_m5C:0 48957 chr12 130648000 130648000 1 + G T UCEC 130647998 + 130647978 130648018 41 TGTTCCCGCCGCTGTTCCGGCCGCAGCGGCCCCACAGCGCG TGTTCCCGCCGCTGTTCCGGCCTCAGCGGCCCCACAGCGCG < 41bp 0.806802550885388 0.485069146813163 0.54302204 0.43483937 prediction 0.613605101770775 Functional Loss - FZD10 ENSG00000111432 CDS Human protein_coding chr12:130647998 chr12:130648000 nonsynonymous SNV 0.961 0 23 hm5C_associated_SNPs_53605 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.08604408 0 hm5C_site_48957 DeepMRMD:0.08604408;iRNA_m5C:0 48958 chr2 88482275 88482275 1 + G T GBM 88482273 + 88482253 88482293 41 CGTCTGGTCGTGGCAGTGAACCGCAATGACATCATCCACAG CGTCTGGTCGTGGCAGTGAACCTCAATGACATCATCCACAG < 41bp 0.834141136468969 0.527361887561228 0.09223452 0.119247675 prediction 0.613558497815481 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88482273 chr2:88482275 nonsynonymous SNV 0.962 1 23 hm5C_associated_SNPs_53606 0 0 0 2 2 exosome 0.500231792204807 0.500231643913654 0 2.96582307601767e-07 hm5C_site_48958 DeepMRMD:0;iRNA_m5C:2.96582307601767e-07 48959 chr14 74416676 74416676 1 + C A UCEC 74416678 - 74416658 74416698 41 GAGGCGCGGAGGGGAGCCGTCAGGTGAGGAGAGAAAAGAGA GAGGCGCGGAGGGGAGCCGTCATGTGAGGAGAGAAAAGAGA < 41bp 0.806774215757675 0.475642990996117 0.90311885 0.83846706 prediction 0.613548431515349 Functional Loss - FAM161B ENSG00000156050 CDS Human protein_coding chr14:74416678 chr14:74416676 nonsynonymous SNV 0.641 2 23 hm5C_associated_SNPs_53607 0 0 0 0 1 exosome 0.500231643921093 0.500231643921141 0.12930358 0 hm5C_site_48959 DeepMRMD:0.12930358;iRNA_m5C:0 48960 chr17 20239313 20239313 1 + G T BLCA 20239310 + 20239290 20239330 41 AGAACGAGAAAAGATGGACACTGGGGTTGTACTTCTCTCAG AGAACGAGAAAAGATGGACACTGTGGTTGTACTTCTCTCAG < 41bp 0.827520465113825 0.520750391286826 0.69575346 0.18585533 prediction 0.613540147653997 Functional Loss - CCDC144CP ENSG00000154898 ncRNA_exonic Human transcribed_processed_pseudogene chr17:20239310 chr17:20239313 . . 0 24 hm5C_associated_SNPs_53608 0 0 0 2 1 unknown 0.500231644000518 0.500231643811406 0.39150692 3.78222786423521e-10 hm5C_site_48960 DeepMRMD:0.39150692;iRNA_m5C:3.78222786423521e-10 48961 chr10 121212231 121212231 1 + A T LUAD 121212227 + 121212207 121212247 41 GTGCTGGACATCGAGCAGTTCTCCACTGTGAAGGGCGTCAA GTGCTGGACATCGAGCAGTTCTCCTCTGTGAAGGGCGTCAA < 41bp 0.806758928100275 0.46202221717879 0.78696036 0.03267494 prediction 0.613517856200549 Functional Loss - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121212227 chr10:121212231 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_53609 0 0 0 0 2 Cytosol 0.500231643953182 0.500231643930053 0.57392072 4.62592186778465e-11 hm5C_site_48961 DeepMRMD:0.57392072;iRNA_m5C:4.62592186778465e-11 48962 chr5 52778754 52778754 1 + G T BLCA 52778751 + 52778731 52778771 41 AAGCGAAGAACGGCCGCTGCCAGGTCCTGTACAAGACCGAA AAGCGAAGAACGGCCGCTGCCAGTTCCTGTACAAGACCGAA < 41bp 0.806755886245239 0.455889428540066 0.43216136 0.080228984 prediction 0.613511772490478 Functional Loss - FST ENSG00000134363 CDS Human protein_coding chr5:52778751 chr5:52778754 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53610 0 0 1 0 1 nucleus 0.500231643919437 0.500231643908641 0 2.15925055613297e-11 hm5C_site_48962 DeepMRMD:0;iRNA_m5C:2.15925055613297e-11 48963 chr3 71804187 71804187 1 + G T LUAD 71804184 + 71804164 71804204 41 GCCTCCGTGTGGCTGACCTTCGCGCAGGCCGGCATCAACCC GCCTCCGTGTGGCTGACCTTCGCTCAGGCCGGCATCAACCC < 41bp 0.806752684212866 0.469939737525978 0.24306634 0.03921327 prediction 0.613505368425731 Functional Loss - GPR27 ENSG00000170837 CDS Human protein_coding chr3:71804184 chr3:71804187 synonymous SNV . 0 24 hm5C_associated_SNPs_53611 0 0 0 0 0 exosome 0.500231643921095 0.500231643921092 0 5.32907051820075e-15 hm5C_site_48963 DeepMRMD:0;iRNA_m5C:5.32907051820075e-15 48964 chr19 758303 758303 1 + G T SARC 758301 + 758281 758321 41 CAAGCCCAGCAGTCTCTCCACAGCGGAGGCCAAGGCTGCGA CAAGCCCAGCAGTCTCTCCACATCGGAGGCCAAGGCTGCGA < 41bp 0.806751614772138 0.478810038967854 0.21044558 0.054510385 prediction 0.613503229544275 Functional Loss - MISP ENSG00000099812 CDS Human protein_coding chr19:758301 chr19:758303 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_53612 0 0 0 0 0 nucleus 0.500231643005352 0.50023164429195 0 0 hm5C_site_48964 DeepMRMD:0;iRNA_m5C:0 48965 chr12 1740547 1740547 1 + G T LUSC 1740544 + 1740524 1740564 41 CCCAGCCTGCTGCTGCTGTTCACGGCTGCTCTGCTGTCCAG CCCAGCCTGCTGCTGCTGTTCACTGCTGCTCTGCTGTCCAG < 41bp 0.879481744759178 0.572748626515149 0.68611276 0.16115353 prediction 0.613466236488059 Functional Loss - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1740544 chr12:1740547 synonymous SNV . 0 24 hm5C_associated_SNPs_53613 0 0 0 0 2 Endoplasmic reticulum 0.50023167087593 0.500231580270663 0.37222552 1.81210535021847e-07 hm5C_site_48965 DeepMRMD:0.37222552;iRNA_m5C:1.81210535021847e-07 48966 chr10 124271510 124271510 1 + G T LUAD 124271508 + 124271488 124271528 41 AAGCCAAAGAGCTGAAGGACCGGCACCGGGACTTCCCAGAC AAGCCAAAGAGCTGAAGGACCGTCACCGGGACTTCCCAGAC < 41bp 0.80672581217464 0.484191364355003 0.39534825 0.25859588 prediction 0.61345162434928 Functional Loss - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124271508 chr10:124271510 synonymous SNV . 0 23 hm5C_associated_SNPs_53614 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643901693 0 3.87991860861803e-11 hm5C_site_48966 DeepMRMD:0;iRNA_m5C:3.87991860861803e-11 48967 chr19 47823751 47823751 1 + G T BLCA 47823748 + 47823728 47823768 41 CGCAGGGCCACGCGGTCCACCAAGACACTCAAGGTGGTGGT CGCAGGGCCACGCGGTCCACCAATACACTCAAGGTGGTGGT < 41bp 0.806718480441703 0.427652502961601 0.07540804 0.03898552 prediction 0.613436960883405 Functional Loss - C5AR1 ENSG00000197405 CDS Human protein_coding chr19:47823748 chr19:47823751 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53615 0 0 0 0 0 chromatin 0.500231027073552 0.50023164526279 0 0 hm5C_site_48967 DeepMRMD:0;iRNA_m5C:0 48968 chr7 150269516 150269516 1 + G T LUAD 150269513 + 150269493 150269533 41 CAGGGCCTCATGCTCTGCTTCTGGTGGTTCCACTGGGCCGT CAGGGCCTCATGCTCTGCTTCTGTTGGTTCCACTGGGCCGT < 41bp 0.806711372364477 0.42470044733899 0.49600336 0.15523458 prediction 0.613422744728955 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150269513 chr7:150269516 nonsynonymous SNV 0.369 4 24 hm5C_associated_SNPs_53616 0 0 0 0 0 exosome 0.500231643921088 0.500231643921504 0 0 hm5C_site_48968 DeepMRMD:0;iRNA_m5C:0 48969 chr15 42111747 42111747 1 + G T rs60875657 42111745 + 42111725 42111765 41 AGGGCTCCAGGGTTGGGTGGCGGGGGGGGGGCAGGAGACAC AGGGCTCCAGGGTTGGGTGGCGTGGGGGGGGCAGGAGACAC < 41bp 0.830909674968541 0.524204175250288 0.91986513 0.90595496 prediction 0.613410999436506 Functional Loss - MAPKBP1 ENSG00000137802 intronic Human protein_coding chr15:42111745 chr15:42111747 . . 0 23 hm5C_associated_SNPs_53617 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.0278203400000001 0 hm5C_site_48969 DeepMRMD:0.0278203400000001;iRNA_m5C:0 48970 chr16 31121591 31121591 1 + G T UCEC 31121588 + 31121568 31121608 41 CGACAGCTGCTGGATGACCACAAGGATGTGGTGACCCTCTT CGACAGCTGCTGGATGACCACAATGATGTGGTGACCCTCTT < 41bp 0.806703445730924 0.430973442629407 0.5875236 0.2212413 prediction 0.613406891461849 Functional Loss - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121588 chr16:31121591 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53618 0 0 1 2 2 Ribosome 0.500231643435927 0.500232600517171 0.1750472 0 hm5C_site_48970 DeepMRMD:0.1750472;iRNA_m5C:0 48971 chr2 210518007 210518007 1 + G T LUAD 210518004 + 210517984 210518024 41 GATTAAGGATCAAGGCGGAGCAGGGGAAGGACTTGTCCGAA GATTAAGGATCAAGGCGGAGCAGTGGAAGGACTTGTCCGAA < 41bp 0.806691627159995 0.443968378169364 0.9169978 0.51352817 prediction 0.613383254319991 Functional Loss - MAP2 ENSG00000078018 CDS Human protein_coding chr2:210518004 chr2:210518007 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_53619 0 0 0 0 0 Dendrite 0.500231643920855 0.500231643921114 0.80693926 0 hm5C_site_48971 DeepMRMD:0.80693926;iRNA_m5C:0 48972 chr19 19221575 19221575 1 + G T LUSC 19221572 + 19221552 19221592 41 TGCGGGAGGAGGGCGCCGTGCGCGGCCTCTACAAAGGCTTG TGCGGGAGGAGGGCGCCGTGCGCTGCCTCTACAAAGGCTTG < 41bp 0.806689342754046 0.435164358622632 0.6731466 0.14340678 prediction 0.613378685508093 Functional Loss - SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19221572 chr19:19221575 nonsynonymous SNV 0.992 5 24 hm5C_associated_SNPs_53620 0 0 0 0 0 Endoplasmic reticulum 0.50023164455432 0.500231605591779 0.3462932 7.79250821647537e-08 hm5C_site_48972 DeepMRMD:0.3462932;iRNA_m5C:7.79250821647537e-08 48973 chr19 3765207 3765207 1 + G T UCEC 3765204 + 3765184 3765224 41 GGAAAAGGTGCAGTGACCAGCGAGGCCCTCAAGGACCCCGA GGAAAAGGTGCAGTGACCAGCGATGCCCTCAAGGACCCCGA < 41bp 0.888913227428859 0.582225263105833 0.9038716 0.32217258 prediction 0.613375928646053 Functional Loss - MRPL54 ENSG00000183617 CDS Human protein_coding chr19:3765204 chr19:3765207 nonsynonymous SNV 0.074 0 24 hm5C_associated_SNPs_53621 0 0 1 0 1 Ribosome 0.500231643836828 0.50023164304924 0.8077432 1.57517576759858e-09 hm5C_site_48973 DeepMRMD:0.8077432;iRNA_m5C:1.57517576759858e-09 48974 chr21 31802661 31802661 1 + G T UCEC 31802658 + 31802638 31802678 41 TGGGGGCTACCTGTACTACCCAGGCTCCTACCCCAGCAGCC TGGGGGCTACCTGTACTACCCAGTCTCCTACCCCAGCAGCC < 41bp 0.806673009618833 0.439085627683987 0.906083 0.5473925 prediction 0.613346019237666 Functional Loss - KRTAP13-4 ENSG00000186971 CDS Human protein_coding chr21:31802658 chr21:31802661 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_53622 0 0 0 0 0 unknown 0.500231647480724 0.500231650669237 0.717381 0 hm5C_site_48974 DeepMRMD:0.717381;iRNA_m5C:0 48975 chr11 117109397 117109397 1 + G T UCEC 117109395 + 117109375 117109415 41 ACAATAACCAAGGAGAATAACAGAAATGTCCATTTGGAGCA ACAATAACCAAGGAGAATAACATAAATGTCCATTTGGAGCA < 41bp 0.807292326219261 0.500622687991287 0.40512574 0.07047784 prediction 0.613339276455948 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117109395 chr11:117109397 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53623 0 0 1 0 2 chromatin 0.500231652511945 0.500231591371253 0 1.22281384795642e-07 hm5C_site_48975 DeepMRMD:0;iRNA_m5C:1.22281384795642e-07 48976 chr6 74072990 74072990 1 + G T ACC 74072988 + 74072968 74073008 41 CTGACTATCACCGCCAGCTCCAGGCGAAAGGTACGGGGCTG CTGACTATCACCGCCAGCTCCATGCGAAAGGTACGGGGCTG < 41bp 0.806669574220237 0.476684198957816 0.82753474 0.16615435 prediction 0.613339148440474 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072988 chr6:74072990 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_53624 0 0 0 0 1 unknown 0.500231643923282 0.500231643921117 0.65506948 4.33053592985289e-12 hm5C_site_48976 DeepMRMD:0.65506948;iRNA_m5C:4.33053592985289e-12 48977 chr14 73421133 73421133 1 + G T LUAD 73421130 + 73421110 73421150 41 CCTGTTGACCAACGTGGTGACGGGACACCGGCAGTCCTTTG CCTGTTGACCAACGTGGTGACGGTACACCGGCAGTCCTTTG < 41bp 0.872295989824417 0.565641606487946 0.8962826 0.7395112 prediction 0.613308766672941 Functional Loss - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73421130 chr14:73421133 nonsynonymous SNV 0.990 4 24 hm5C_associated_SNPs_53625 0 0 1 0 2 chromatin 0.500231643921092 0.500231643921092 0.3135428 0 hm5C_site_48977 DeepMRMD:0.3135428;iRNA_m5C:0 48978 chrX 83129600 83129600 1 + G T UCEC 83129597 + 83129577 83129617 41 GTCAGACGTCTTTGTTGGTGCAAGATGCCTCCTCCACCTCC GTCAGACGTCTTTGTTGGTGCAATATGCCTCCTCCACCTCC < 41bp 0.806650405597632 0.455538176552923 0.5321392 0.072384894 prediction 0.613300811195265 Functional Loss - CYLC1 ENSG00000183035 CDS Human protein_coding chrX:83129597 chrX:83129600 nonsynonymous SNV 0.383 2 24 hm5C_associated_SNPs_53626 0 0 0 0 0 unknown 0.500231643925368 0.500231643921093 0.0642784000000001 8.55071569105803e-12 hm5C_site_48978 DeepMRMD:0.0642784000000001;iRNA_m5C:8.55071569105803e-12 48979 chr16 1291480 1291480 1 + G T UCEC 1291478 + 1291458 1291498 41 TCAGGGTGCAACTGCGGGAGCAGCACCTCTACTACCAGGAC TCAGGGTGCAACTGCGGGAGCATCACCTCTACTACCAGGAC < 41bp 0.80665004894547 0.483557546871928 0.26442575 0.21725315 prediction 0.613300097890941 Functional Loss - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291478 chr16:1291480 nonsynonymous SNV 0.018 2 23 hm5C_associated_SNPs_53627 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_48979 DeepMRMD:0;iRNA_m5C:0 48980 chr19 50384664 50384664 1 + A C LUSC 50384660 + 50384640 50384680 41 CCAGGCTGGAGGTTCCCTGCCCGCACTGCACTTCCACCGCG CCAGGCTGGAGGTTCCCTGCCCGCCCTGCACTTCCACCGCG < 41bp 0.806648985820598 0.409265299479508 0.13375741 0.11669645 prediction 0.613297971641195 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50384660 chr19:50384664 synonymous SNV . 0 25 hm5C_associated_SNPs_53628 0 0 0 0 1 membrane 0.500231643921092 0.500231643921037 0 1.10134124042816e-13 hm5C_site_48980 DeepMRMD:0;iRNA_m5C:1.10134124042816e-13 48981 chr10 25464725 25464725 1 + C A LUAD 25464727 - 25464707 25464747 41 GTGGCGTGTGTCAGTGTGTCCAGCGCCCGGTGCAAGGAGGG GTGGCGTGTGTCAGTGTGTCCATCGCCCGGTGCAAGGAGGG < 41bp 0.824822674474655 0.518189191241646 0.23479775 0.21232742 prediction 0.613266966466017 Functional Loss - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25464727 chr10:25464725 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_53629 0 0 0 0 0 Endoplasmic reticulum 0.500231643925136 0.500231618712742 0 5.0424786790515e-08 hm5C_site_48981 DeepMRMD:0;iRNA_m5C:5.0424786790515e-08 48982 chr19 7587652 7587652 1 + G T rs61736595 7587650 + 7587630 7587670 41 CCCCAGCATGACAGCCCCGGCGGGTCCGCGCGGCTCAGGTG CCCCAGCATGACAGCCCCGGCGTGTCCGCGCGGCTCAGGTG < 41bp 0.810184323245426 0.503557095878233 0.7845521 0.42642415 prediction 0.613254454734387 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7587650 chr19:7587652 nonsynonymous SNV 0.451 4 23 hm5C_associated_SNPs_53630 1 0 1 0 1 chromatin 0.500231643921092 0.500231643921524 0.5691042 0 hm5C_site_48982 DeepMRMD:0.5691042;iRNA_m5C:0 Ganglioside sialidase deficiency Ganglioside sialidase deficiency 48983 chr15 24921910 24921910 1 + G T HNSC 24921907 + 24921887 24921927 41 CTTGCCGATTCCGCTGATGTCCGGAAAGAGGATGCCTGATG CTTGCCGATTCCGCTGATGTCCGTAAAGAGGATGCCTGATG < 41bp 0.806621033989626 0.442710115580487 0.5433765 0.23987263 prediction 0.613242067979252 Functional Loss - NPAP1 ENSG00000185823 CDS Human protein_coding chr15:24921907 chr15:24921910 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_53631 0 0 0 0 0 Nucleus 0.500231628503055 0.500231643850817 0.0867530000000001 0 hm5C_site_48983 DeepMRMD:0.0867530000000001;iRNA_m5C:0 48984 chr22 41968067 41968067 1 + G T UCEC 41968065 + 41968045 41968085 41 CCCTTCCACAGGGAGGGCAGCAGGGTCTGGGAGCGGGGTGG CCCTTCCACAGGGAGGGCAGCATGGTCTGGGAGCGGGGTGG < 41bp 0.848861089414874 0.542246515184474 0.8989304 0.32367712 prediction 0.613229148460801 Functional Loss - CSDC2 ENSG00000172346 CDS Human protein_coding chr22:41968065 chr22:41968067 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_53632 0 0 0 0 0 Endoplasmic reticulum 0.500231643921093 0.500231643921093 0.7978608 0 hm5C_site_48984 DeepMRMD:0.7978608;iRNA_m5C:0 48985 chr8 24771768 24771768 1 + C A CESC 24771770 - 24771750 24771790 41 CCAGGGTGGCGCGCAGCTCGCGGATCTCCTGGTCGTACGCG CCAGGGTGGCGCGCAGCTCGCGTATCTCCTGGTCGTACGCG < 41bp 0.806603917441404 0.489986338027226 0.90183425 0.15177125 prediction 0.613207834882808 Functional Loss - NEFM ENSG00000104722 CDS Human protein_coding chr8:24771770 chr8:24771768 synonymous SNV . 0 23 hm5C_associated_SNPs_53633 0 0 0 0 0 exosome 0.500231644031636 0.500231569579495 0.8036685 1.48904283792106e-07 hm5C_site_48985 DeepMRMD:0.8036685;iRNA_m5C:1.48904283792106e-07 48986 chr15 69672266 69672266 1 + G T UCEC 69672264 + 69672244 69672284 41 TGTTCGGCTACCGCCATCCACAGAGTTCTGCCACTGCCTGC TGTTCGGCTACCGCCATCCACATAGTTCTGCCACTGCCTGC < 41bp 0.806601654896071 0.463667816592835 0.90951025 0.24438515 prediction 0.613203309792141 Functional Loss - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69672264 chr15:69672266 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_53634 0 0 0 0 2 Cytosol 0.500231575877984 0.500231644521132 0.8190205 0 hm5C_site_48986 DeepMRMD:0.8190205;iRNA_m5C:0 48987 chr2 48873911 48873911 1 + G T LUSC 48873909 + 48873889 48873929 41 CTGAAGCTTTGTTGTGTCATCAGGAAAGTTCTCACTATATC CTGAAGCTTTGTTGTGTCATCATGAAAGTTCTCACTATATC < 41bp 0.822643027316013 0.516048196071009 0.37544692 0.12149957 prediction 0.613189662490009 Functional Loss - GTF2A1L;STON1-GTF2A1L ENSG00000068781;ENSG00000242441 CDS Human other chr2:48873909 chr2:48873911 nonsynonymous SNV 0.011 0 23 hm5C_associated_SNPs_53635 0 0 0 0 0 unknown 0.500231632248307 0.500231651720541 0 0 hm5C_site_48987 DeepMRMD:0;iRNA_m5C:0 48988 chr9 125273176 125273176 1 + G T LUAD 125273174 + 125273154 125273194 41 CTGTGTTCTTCACCCTGTTCCTGGGCATGTACCTGACCACG CTGTGTTCTTCACCCTGTTCCTTGGCATGTACCTGACCACG < 41bp 0.818971906090874 0.51237956613584 0.65466416 0.2587647 prediction 0.613184679910068 Functional Loss - OR1J2 ENSG00000197233 CDS Human protein_coding chr9:125273174 chr9:125273176 synonymous SNV . 0 23 hm5C_associated_SNPs_53636 0 0 0 0 0 exosome 0.500231622680004 0.50023164392014 0.30932832 0 hm5C_site_48988 DeepMRMD:0.30932832;iRNA_m5C:0 48989 chr12 13154867 13154867 1 + G T UCEC 13154865 + 13154845 13154885 41 ATCAGTGTCACCGACCTCATCGGGGGCAAGTGGATCTTTGG ATCAGTGTCACCGACCTCATCGTGGGCAAGTGGATCTTTGG < 41bp 0.806586255881913 0.49164091115296 0.96403193 0.9094173 prediction 0.613172511763826 Functional Loss - HTR7P1 ENSG00000183935 ncRNA_exonic Human transcribed_processed_pseudogene chr12:13154865 chr12:13154867 . . 0 23 hm5C_associated_SNPs_53637 0 0 0 0 0 unknown 0.500231643921092 0.500231644052577 0.10922926 0 hm5C_site_48989 DeepMRMD:0.10922926;iRNA_m5C:0 48990 chr1 43779453 43779453 1 + G T DLBC 43779451 + 43779431 43779471 41 CCCTCTCACTGTGTCCAGGGCTGCAGGCTGAGGGCCCAGTC CCCTCTCACTGTGTCCAGGGCTTCAGGCTGAGGGCCCAGTC < 41bp 0.807050669599228 0.500465002840425 0.2711863 0.23837659 prediction 0.613171333517606 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43779451 chr1:43779453 synonymous SNV . 0 23 hm5C_associated_SNPs_53638 0 0 0 0 1 Cytosol 0.500231643921081 0.500231643921092 0 0 hm5C_site_48990 DeepMRMD:0;iRNA_m5C:0 48991 chr1 171077354 171077354 1 + G T UCEC 171077352 + 171077332 171077372 41 TGCCACAGAACTCAGCCGCACAGCAGAACAGGTACTACTCC TGCCACAGAACTCAGCCGCACATCAGAACAGGTACTACTCC < 41bp 0.823160569147447 0.516574927264509 0.9238683 0.88868546 prediction 0.613171283765877 Functional Loss - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171077352 chr1:171077354 nonsynonymous SNV 0.212 4 23 hm5C_associated_SNPs_53639 0 0 0 0 1 exosome 0.500231974731864 0.500231476510214 0.0703656799999999 9.96443298761918e-07 hm5C_site_48991 DeepMRMD:0.0703656799999999;iRNA_m5C:9.96443298761918e-07 48992 chr11 60971063 60971063 1 + G T UCEC 60971061 + 60971041 60971081 41 AGTGGCTGCTGCTGCTGGGTCTGGTGGCACTCTCTGAGTGC AGTGGCTGCTGCTGCTGGGTCTTGTGGCACTCTCTGAGTGC < 41bp 0.831095627047616 0.524518043499953 0.18109429 0.08040953 prediction 0.613155167095326 Functional Loss - PGA3 ENSG00000229859 CDS Human protein_coding chr11:60971061 chr11:60971063 synonymous SNV . 0 23 hm5C_associated_SNPs_53640 0 0 0 0 1 Endoplasmic reticulum 0.500231650869267 0.500231643990164 0 1.37582063519659e-08 hm5C_site_48992 DeepMRMD:0;iRNA_m5C:1.37582063519659e-08 48993 chr19 10132068 10132068 1 + G T STAD 10132066 + 10132046 10132086 41 GACCTCTATCTCCCAGCCTCCAGGAAGCTGTTTTGCTCCGT GACCTCTATCTCCCAGCCTCCATGAAGCTGTTTTGCTCCGT < 41bp 0.836161326372887 0.529585952524044 0.32983047 0.05386889 prediction 0.613150747697687 Functional Loss - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10132066 chr19:10132068 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_53641 0 0 0 0 1 unknown 0.500231645371186 0.5002316439211 0 2.90017299064971e-09 hm5C_site_48993 DeepMRMD:0;iRNA_m5C:2.90017299064971e-09 48994 chrX 55116965 55116965 1 + G T LUAD 55116962 + 55116942 55116982 41 AGCCCACTGAGGAAAAACGTCAAGAAGAGGAACCACCAACT AGCCCACTGAGGAAAAACGTCAATAAGAGGAACCACCAACT < 41bp 0.873782469922966 0.567210136061899 0.2673805 0.30222237 prediction 0.613144667722133 Functional Loss - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55116962 chrX:55116965 stopgain 0.146 0 24 hm5C_associated_SNPs_53642 0 0 0 0 2 Cytosol 0.500231643921091 0.500231643921851 0 0 hm5C_site_48994 DeepMRMD:0;iRNA_m5C:0 48995 chr10 38464750 38464750 1 + G T UCEC 38464748 + 38464728 38464768 41 TCATGGGAGGTGGCAGGGTACAGGCATTGGCCCAAGCTGTG TCATGGGAGGTGGCAGGGTACATGCATTGGCCCAAGCTGTG < 41bp 0.813203316798242 0.506663293659776 0.36581993 0.26860827 prediction 0.613080046276931 Functional Loss - LOC100129055 ENSG00000224761 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38464748 chr10:38464750 . . 0 23 hm5C_associated_SNPs_53643 0 0 0 0 0 unknown 0.500231643861507 0.500231628392029 0 3.09389565078533e-08 hm5C_site_48995 DeepMRMD:0;iRNA_m5C:3.09389565078533e-08 48996 chr17 48918084 48918084 1 + G T OV 48918082 + 48918062 48918102 41 GCTGACCGAGGAGCCTGACTCGGGCCGCGCCCTGGTGACTG GCTGACCGAGGAGCCTGACTCGTGCCGCGCCCTGGTGACTG < 41bp 0.847154145360109 0.540619168860382 0.929767 0.57838106 prediction 0.613069952999453 Functional Loss - WFIKKN2 ENSG00000173714 CDS Human protein_coding chr17:48918082 chr17:48918084 nonsynonymous SNV 0.735 4 23 hm5C_associated_SNPs_53644 0 0 0 0 0 exosome 0.500231643921212 0.500231643905098 0.70277188 3.22271098696092e-11 hm5C_site_48996 DeepMRMD:0.70277188;iRNA_m5C:3.22271098696092e-11 48997 chr17 62080238 62080238 1 + C A GBM 62080240 - 62080220 62080260 41 CATCATAGTCACGGTGGTGTCGGTGTTGCTGTCCCTGTTCG CATCATAGTCACGGTGGTGTCGTTGTTGCTGTCCCTGTTCG < 41bp 0.829015167567112 0.522485448339914 0.39618987 0.17935055 prediction 0.613059438454396 Functional Loss - ICAM2 ENSG00000108622 CDS Human protein_coding chr17:62080240 chr17:62080238 nonsynonymous SNV 0.029 0 23 hm5C_associated_SNPs_53645 0 0 1 0 1 Endoplasmic reticulum 0.50023158335557 0.500231130421841 0 9.05867458378395e-07 hm5C_site_48997 DeepMRMD:0;iRNA_m5C:9.05867458378395e-07 48998 chr6 99283511 99283511 1 + G T LUSC 99283508 + 99283488 99283528 41 GGTCCGCCTGGCCACCCAGGCGCGCACCACGACCCGCACTC GGTCCGCCTGGCCACCCAGGCGCTCACCACGACCCGCACTC < 41bp 0.806511088035661 0.445987330669075 0.24962577 0.16492778 prediction 0.613022176071322 Functional Loss - POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283508 chr6:99283511 synonymous SNV . 0 24 hm5C_associated_SNPs_53646 0 0 1 0 0 exosome 0.500231643837821 0.500231640689003 0 6.29763485804347e-09 hm5C_site_48998 DeepMRMD:0;iRNA_m5C:6.29763485804347e-09 48999 chr10 88780135 88780135 1 + G T UCEC 88780132 + 88780112 88780152 41 GAAGGCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAGC GAAGGCCTGGCCCACCGCACCGATAAGGCCACCGAGGGAGC < 41bp 0.873616982004931 0.567114859442959 0.81460965 0.22925723 prediction 0.613004245123945 Functional Loss - FAM25A ENSG00000188100 CDS Human protein_coding chr10:88780132 chr10:88780135 nonsynonymous SNV 0.805 1 24 hm5C_associated_SNPs_53647 0 0 0 0 1 exosome 0.500231643921096 0.500231643921092 0.6292193 7.54951656745106e-15 hm5C_site_48999 DeepMRMD:0.6292193;iRNA_m5C:7.54951656745106e-15 49000 chr18 54814994 54814994 1 + G T LUAD 54814992 + 54814972 54815012 41 CCTGGTGGCCCAGAAAGAAGCAGCTGTGCCAGCACTCCCTC CCTGGTGGCCCAGAAAGAAGCATCTGTGCCAGCACTCCCTC < 41bp 0.817160937065597 0.510659190218812 0.8494055 0.342949 prediction 0.61300349369357 Functional Loss - BOD1L2 ENSG00000228075 CDS Human protein_coding chr18:54814992 chr18:54814994 nonsynonymous SNV 0.227 0 23 hm5C_associated_SNPs_53648 0 0 0 0 0 Cytosol 0.500231643921107 0.500437002987979 0.698811 0 hm5C_site_49000 DeepMRMD:0.698811;iRNA_m5C:0 49001 chr4 2044096 2044096 1 + G T rs560858476 2044093 + 2044073 2044113 41 CTGGCCATGGCCCCCCCGCCCGCGTGCCGGTCCCCGATGTC CTGGCCATGGCCCCCCCGCCCGCTTGCCGGTCCCCGATGTC < 41bp 0.806487168599541 0.449620921779749 0.40253946 0.14537653 prediction 0.612974337199083 Functional Loss - C4orf48 ENSG00000243449 CDS Human protein_coding chr4:2044093 chr4:2044096 synonymous SNV . 0 24 hm5C_associated_SNPs_53649 0 0 1 0 1 Ribosome 0.500231676492453 0.500231643921096 0 6.51427150000217e-08 hm5C_site_49001 DeepMRMD:0;iRNA_m5C:6.51427150000217e-08 49002 chr3 44694153 44694153 1 + G T TGCT 44694150 + 44694130 44694170 41 TCATTACCAGGGACTCTGGCCAAGAGTGAGATACTGGAGAC TCATTACCAGGGACTCTGGCCAATAGTGAGATACTGGAGAC < 41bp 0.870519881861812 0.564033727208104 0.6056317 0.36444116 prediction 0.612972309307416 Functional Loss - ZNF35 ENSG00000169981 CDS Human protein_coding chr3:44694150 chr3:44694153 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_53650 0 0 1 0 1 Cytosol 0.500231643920942 0.500231580626237 0.2112634 1.26589411397759e-07 hm5C_site_49002 DeepMRMD:0.2112634;iRNA_m5C:1.26589411397759e-07 49003 chr15 76075404 76075404 1 + A C GBM 76075400 + 76075380 76075420 41 AGCAGGAGAGACTGTGTGAGCAAAATGAGAGGCTTCGGGAG AGCAGGAGAGACTGTGTGAGCAAACTGAGAGGCTTCGGGAG < 41bp 0.816052254765884 0.509570846766092 0.69661987 0.72910124 prediction 0.612962815999585 Functional Loss - MIR4313;UBE2Q2 ENSG00000187812 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:76075400 chr15:76075404 . . 0 25 hm5C_associated_SNPs_53651 0 0 0 1 0 unknown 0.500231644912934 0.50023804880168 0 0 hm5C_site_49003 DeepMRMD:0;iRNA_m5C:0 49004 chr10 73472564 73472564 1 + C A BLCA 73472567 - 73472547 73472587 41 GGCCACGGGCCACCTGCCTGCAAGATGCTGTGGCCTTCAGG GGCCACGGGCCACCTGCCTGCAATATGCTGTGGCCTTCAGG < 41bp 0.838936874883849 0.532464967881883 0.55908537 0.22691453 prediction 0.612943814003932 Functional Loss - CDH23 ENSG00000107736 CDS Human protein_coding chr10:73472567 chr10:73472564 synonymous SNV . 0 24 hm5C_associated_SNPs_53652 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.11817074 0 hm5C_site_49004 DeepMRMD:0.11817074;iRNA_m5C:0 49005 chr1 152484174 152484174 1 + G T UCEC 152484172 + 152484152 152484192 41 GTCTCTTCCTGCTGTGGTTCCAGCTCTGGGGGCTGCTGCAG GTCTCTTCCTGCTGTGGTTCCATCTCTGGGGGCTGCTGCAG < 41bp 0.832909735886843 0.526437837222834 0.34001368 0.13654813 prediction 0.612943797328018 Functional Loss - LCE5A ENSG00000186207 CDS Human protein_coding chr1:152484172 chr1:152484174 nonsynonymous SNV 0.039 1 23 hm5C_associated_SNPs_53653 0 0 0 0 0 exosome 0.500231642438608 0.500231643919948 0 0 hm5C_site_49005 DeepMRMD:0;iRNA_m5C:0 49006 chr19 8464858 8464858 1 + G T HNSC 8464856 + 8464836 8464876 41 ATCGGCGTGGAGTTCGCCACCCGCAGCATCCAGGTGGACGG ATCGGCGTGGAGTTCGCCACCCTCAGCATCCAGGTGGACGG < 41bp 0.8298310764452 0.523361961949813 0.076818705 0.03151241 prediction 0.612938228990773 Functional Loss - RAB11B ENSG00000185236 CDS Human protein_coding chr19:8464856 chr19:8464858 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_53654 0 0 0 0 1 Ribosome 0.500231643921086 0.500231643921092 0 0 hm5C_site_49006 DeepMRMD:0;iRNA_m5C:0 49007 chr8 7806693 7806693 1 + G T HNSC 7806690 + 7806670 7806710 41 ATGTAGCTATTGACTTCACCCAGGAAGAGTGGGACATGATG ATGTAGCTATTGACTTCACCCAGTAAGAGTGGGACATGATG < 41bp 0.806458274314564 0.449035040901492 0.23683926 0.060729533 prediction 0.612916548629129 Functional Loss - ZNF705B ENSG00000215356 CDS Human protein_coding chr8:7806690 chr8:7806693 stopgain 0.620 0 24 hm5C_associated_SNPs_53655 0 0 0 0 2 unknown 0.500231432467917 0.500231644074137 0 0 hm5C_site_49007 DeepMRMD:0;iRNA_m5C:0 49008 chr19 46181247 46181247 1 + G T BRCA 46181245 + 46181225 46181265 41 AAATGCGCTGCCGGGATTACCGGCTGAGGTGAGGGCATGCG AAATGCGCTGCCGGGATTACCGTCTGAGGTGAGGGCATGCG < 41bp 0.806453103354072 0.486115319405211 0.8906213 0.41267854 prediction 0.612906206708144 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46181245 chr19:46181247 synonymous SNV . 0 23 hm5C_associated_SNPs_53656 0 0 1 0 2 chromatin 0.50023164392514 0.500231643919432 0.7812426 1.14155351838008e-11 hm5C_site_49008 DeepMRMD:0.7812426;iRNA_m5C:1.14155351838008e-11 49009 chr6 153073323 153073323 1 + G T UCEC 153073321 + 153073301 153073341 41 AGAGGCACAGAAATGGACACCAGAAATAAGGCCCAGCTCCT AGAGGCACAGAAATGGACACCATAAATAAGGCCCAGCTCCT < 41bp 0.811869314738224 0.505429763219473 0.4352971 0.059533626 prediction 0.612879103037502 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153073321 chr6:153073323 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_53657 0 0 0 0 2 exosome 0.500231643920965 0.500231643917464 0 7.00017821486654e-12 hm5C_site_49009 DeepMRMD:0;iRNA_m5C:7.00017821486654e-12 49010 chr19 44611466 44611466 1 + T G UCEC 44611470 - 44611450 44611490 41 CTCGCTGATGTTTCAAAAGACACGAGGCCCATCTGAAGCTC CTCGCTGATGTTTCAAAAGACACGCGGCCCATCTGAAGCTC < 41bp 0.881180166309233 0.574743585665428 0.06756413 0.052500635 prediction 0.61287316128761 Functional Loss - ZNF224 ENSG00000267680 CDS Human protein_coding chr19:44611470 chr19:44611466 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_53658 0 0 0 0 0 nucleus 0.500231641314954 0.500005870804863 0 0.000451541020183743 hm5C_site_49010 DeepMRMD:0;iRNA_m5C:0.000451541020183743 49011 chr9 71006587 71006587 1 + G T LUAD 71006584 + 71006564 71006604 41 TGACATATGCAACGACTCTTCTGGAAGCAATGAAAGGAGGA TGACATATGCAACGACTCTTCTGTAAGCAATGAAAGGAGGA < 41bp 0.806434260159428 0.445681626296618 0.27701876 0.07839629 prediction 0.612868520318855 Functional Loss - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71006584 chr9:71006587 stopgain 0.999 1 24 hm5C_associated_SNPs_53659 0 0 0 0 1 exosome 0.500231606215474 0.500231607498183 0 0 hm5C_site_49011 DeepMRMD:0;iRNA_m5C:0 49012 chr5 140720438 140720438 1 + G T LUAD 140720435 + 140720415 140720455 41 TGCGCACGGCGCGAGCCCTGCTGGACAGAGACGCGCTCAAG TGCGCACGGCGCGAGCCCTGCTGTACAGAGACGCGCTCAAG < 41bp 0.806428390309255 0.433613538449371 0.86091125 0.40963295 prediction 0.61285678061851 Functional Loss - PCDHGA2 ENSG00000081853 CDS Human protein_coding chr5:140720435 chr5:140720438 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_53660 0 0 0 0 0 exosome 0.500231645885768 0.500231643920312 0.7218225 3.93091159622827e-09 hm5C_site_49012 DeepMRMD:0.7218225;iRNA_m5C:3.93091159622827e-09 49013 chr7 155251109 155251109 1 + G T SARC 155251107 + 155251087 155251127 41 CCCCAAGCCTGGCGAAGCAGCGGCGGCGGTGGAGGGACAGC CCCCAAGCCTGGCGAAGCAGCGTCGGCGGTGGAGGGACAGC < 41bp 0.806412683194191 0.473427978404583 0.87211347 0.5071811 prediction 0.612825366388382 Functional Loss - EN2 ENSG00000164778 CDS Human protein_coding chr7:155251107 chr7:155251109 nonsynonymous SNV 0.779 2 23 hm5C_associated_SNPs_53661 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921106 0.72986474 0 hm5C_site_49013 DeepMRMD:0.72986474;iRNA_m5C:0 49014 chr11 1955226 1955226 1 + G T GBM 1955223 + 1955203 1955243 41 GCAGAGAAGGAGAGGGAGCGCCAGAACAGACTGGCGGTGAG GCAGAGAAGGAGAGGGAGCGCCATAACAGACTGGCGGTGAG < 41bp 0.806410701792017 0.450076961191914 0.3679133 0.2297062 prediction 0.612821403584035 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955223 chr11:1955226 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_53662 0 0 0 0 2 exosome 0.500231642572568 0.500231643913791 0 0 hm5C_site_49014 DeepMRMD:0;iRNA_m5C:0 49015 chr20 30667655 30667655 1 + G T LUSC 30667652 + 30667632 30667672 41 GGCAACATGCTGGGCTCCTTCATGATCCGGGATAGCGAGAC GGCAACATGCTGGGCTCCTTCATTATCCGGGATAGCGAGAC < 41bp 0.881701247524864 0.575294336126617 0.08026099 0.020835698 prediction 0.612813822796493 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30667652 chr20:30667655 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53663 0 0 0 0 2 Nucleus 0.50023164392045 0.500231643921068 0 0 hm5C_site_49015 DeepMRMD:0;iRNA_m5C:0 49016 chr3 179426658 179426658 1 + G T UCEC 179426656 + 179426636 179426676 41 AAAGTGGTTCTTTGACAGCTCTGGGGGCAACGGGCATGCGC AAAGTGGTTCTTTGACAGCTCTTGGGGCAACGGGCATGCGC < 41bp 0.822209068524492 0.515804903942754 0.8797033 0.7206779 prediction 0.612808329163476 Functional Loss - USP13 ENSG00000058056 CDS Human protein_coding chr3:179426656 chr3:179426658 nonsynonymous SNV 0.969 4 23 hm5C_associated_SNPs_53664 0 0 1 0 2 Ribosome 0.500231643935986 0.500231644155602 0.3180508 0 hm5C_site_49016 DeepMRMD:0.3180508;iRNA_m5C:0 49017 chr14 20978889 20978889 1 + G T LUAD 20978886 + 20978866 20978906 41 GCTGGCCAGAAGATCCCATCCTCGGTGAAGATGAGGTTGGG GCTGGCCAGAAGATCCCATCCTCTGTGAAGATGAGGTTGGG < 41bp 0.872883572605161 0.566483631157179 0.21404853 0.15119219 prediction 0.612799882895966 Functional Loss - RNASE10 ENSG00000182545 CDS Human protein_coding chr14:20978886 chr14:20978889 nonsynonymous SNV 0.113 2 24 hm5C_associated_SNPs_53665 0 0 0 0 0 exosome 0.500231643923076 0.5002316449042 0 0 hm5C_site_49017 DeepMRMD:0;iRNA_m5C:0 49018 chr16 57775655 57775655 1 + G T LUAD 57775653 + 57775633 57775673 41 ACTGGTGCTGGGCAAAGCCTCCGGGCGGCTGCTGGCTACAG ACTGGTGCTGGGCAAAGCCTCCTGGCGGCTGCTGGCTACAG < 41bp 0.806396572929418 0.474681643926884 0.91147846 0.41957104 prediction 0.612793145858835 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57775653 chr16:57775655 nonsynonymous SNV 0.954 4 23 hm5C_associated_SNPs_53666 1 0 1 0 2 Cytosol 0.500231643987918 0.500231646493992 0.82295692 0 hm5C_site_49018 DeepMRMD:0.82295692;iRNA_m5C:0 Lissencephaly 6, with microcephaly Lissencephaly 6, with microcephaly 49019 chr20 61910347 61910347 1 + G T LUAD 61910344 + 61910324 61910364 41 AACGCCATGTCCTCCCTGTACTCGGTGAGGACTTGGCCCTG AACGCCATGTCCTCCCTGTACTCTGTGAGGACTTGGCCCTG < 41bp 0.88275312590354 0.576377429429056 0.16296118 0.060756326 prediction 0.612751392948969 Functional Loss - ARFGAP1 ENSG00000101199 CDS Human protein_coding chr20:61910344 chr20:61910347 synonymous SNV . 0 24 hm5C_associated_SNPs_53667 0 0 1 0 2 Nucleus 0.500231643945523 0.500231646201096 0 0 hm5C_site_49019 DeepMRMD:0;iRNA_m5C:0 49020 chr17 7536237 7536237 1 + G T LUAD 7536234 + 7536214 7536254 41 CTGGCTCCCCTCCTTAACCTCTGGGCCAAGCCTCAAGGGCG CTGGCTCCCCTCCTTAACCTCTGTGCCAAGCCTCAAGGGCG < 41bp 0.806350674569851 0.486004681179693 0.640154 0.1896955 prediction 0.612701349139702 Functional Loss - SHBG ENSG00000129214 CDS Human protein_coding chr17:7536234 chr17:7536237 nonsynonymous SNV 0.589 3 24 hm5C_associated_SNPs_53668 0 0 0 0 1 cytosol 0.500231643921092 0.500231643912098 0.280308 1.79891657126063e-11 hm5C_site_49020 DeepMRMD:0.280308;iRNA_m5C:1.79891657126063e-11 49021 chr8 30623765 30623765 1 + G T UCEC 30623762 + 30623742 30623782 41 GGTCTTATTTGACTGGATGACGAGAATTGGGTACCACATAT GGTCTTATTTGACTGGATGACGATAATTGGGTACCACATAT < 41bp 0.842066334799902 0.535718153877597 0.47287416 0.17680728 prediction 0.61269636184461 Functional Loss - UBXN8 ENSG00000104691 ncRNA_exonic Human protein_coding chr8:30623762 chr8:30623765 . 0.004 0 24 hm5C_associated_SNPs_53669 0 0 1 1 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_49021 DeepMRMD:0;iRNA_m5C:0 49022 chr10 60272971 60272971 1 + G T LUAD 60272969 + 60272949 60272989 41 CCCGGCTCCAACAGCGAGCGCAGCACCGACTCCCCAGTGCC CCCGGCTCCAACAGCGAGCGCATCACCGACTCCCCAGTGCC < 41bp 0.818608190818711 0.512271528000353 0.061199218 0.030305535 prediction 0.612673325636716 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60272969 chr10:60272971 nonsynonymous SNV 0.970 1 23 hm5C_associated_SNPs_53670 0 0 1 0 0 nucleus 0.500231643928963 0.500231644040099 0 0 hm5C_site_49022 DeepMRMD:0;iRNA_m5C:0 49023 chr16 57765098 57765098 1 + G T LUAD 57765096 + 57765076 57765116 41 GACACAAGGAACTGGCCCCACTGAAGTACCTGGCTCTGGAG GACACAAGGAACTGGCCCCACTTAAGTACCTGGCTCTGGAG < 41bp 0.814005549517498 0.50767270400013 0.5781683 0.32613313 prediction 0.612665691034737 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57765096 chr16:57765098 synonymous SNV . 0 23 hm5C_associated_SNPs_53671 0 0 1 0 1 cytosol 0.50022793530145 0.500231435188823 0.1563366 0 hm5C_site_49023 DeepMRMD:0.1563366;iRNA_m5C:0 49024 chr4 57888373 57888373 1 + G T UCEC 57888370 + 57888350 57888390 41 AGTCTAAAAAAGGATTTGATCAAGAAGAAGTTTTTGAGAAG AGTCTAAAAAAGGATTTGATCAATAAGAAGTTTTTGAGAAG < 41bp 0.806331995487978 0.460364297506802 0.7443278 0.07197118 prediction 0.612663990975957 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57888370 chr4:57888373 stopgain 1.000 1 24 hm5C_associated_SNPs_53672 0 0 1 0 1 Nucleus 0.500231644030538 0.500231643921186 0.4886556 2.18705054066959e-10 hm5C_site_49024 DeepMRMD:0.4886556;iRNA_m5C:2.18705054066959e-10 49025 chr4 15009049 15009049 1 + G T UCEC 15009047 + 15009027 15009067 41 AACCGGAAACATGGGAATCCCAGGAACTATGAATCAGATAT AACCGGAAACATGGGAATCCCATGAACTATGAATCAGATAT < 41bp 0.806331939823108 0.496592460950694 0.864298 0.31784326 prediction 0.612663879646216 Functional Loss - CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15009047 chr4:15009049 stopgain 1.000 1 23 hm5C_associated_SNPs_53673 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921098 0.728596 0 hm5C_site_49025 DeepMRMD:0.728596;iRNA_m5C:0 49026 chr5 72469211 72469211 1 + G T LUAD 72469209 + 72469189 72469229 41 TGCTCTTCTCAGGCATCTTTCTGGGACTGGTGGGGATCACA TGCTCTTCTCAGGCATCTTTCTTGGACTGGTGGGGATCACA < 41bp 0.806328555439181 0.477461887181979 0.90334916 0.3353402 prediction 0.612657110878362 Functional Loss - TMEM174 ENSG00000164325 CDS Human protein_coding chr5:72469209 chr5:72469211 synonymous SNV . 0 23 hm5C_associated_SNPs_53674 0 0 0 0 0 unknown 0.500231643920794 0.500231643921093 0.80669832 0 hm5C_site_49026 DeepMRMD:0.80669832;iRNA_m5C:0 49027 chr22 38084982 38084982 1 + G T LUSC 38084979 + 38084959 38084999 41 ACCTCTCGGGGGCCCGGCTGCTCGGGCTGACCCCACCTGAG ACCTCTCGGGGGCCCGGCTGCTCTGGCTGACCCCACCTGAG < 41bp 0.879804299198112 0.573487361493319 0.81775737 0.4850575 prediction 0.612633875409587 Functional Loss - NOL12 ENSG00000100101 CDS Human protein_coding chr22:38084979 chr22:38084982 nonsynonymous SNV 0.023 5 24 hm5C_associated_SNPs_53675 0 0 1 0 1 Cytosol 0.500231643921187 0.500231643920821 0.63551474 7.32747196252603e-13 hm5C_site_49027 DeepMRMD:0.63551474;iRNA_m5C:7.32747196252603e-13 49028 chr6 52054069 52054069 1 + G T LUAD 52054066 + 52054046 52054086 41 GTGGGCTGCACCTGTGTCACCCCGATTGTCCACCATGTGGC GTGGGCTGCACCTGTGTCACCCCTATTGTCCACCATGTGGC < 41bp 0.868891731185986 0.562578716005806 0.051511735 0.034755737 prediction 0.612626030360359 Functional Loss - IL17A ENSG00000112115 CDS Human protein_coding chr6:52054066 chr6:52054069 synonymous SNV . 0 24 hm5C_associated_SNPs_53676 0 0 0 0 0 unknown 0.500231643921595 0.500231599570485 0 8.87022191253806e-08 hm5C_site_49028 DeepMRMD:0;iRNA_m5C:8.87022191253806e-08 49029 chr2 73115696 73115696 1 + G T OV 73115694 + 73115674 73115714 41 TGCTGTTCCAGGTCCTGGCGCTGGAGGAACCTAATGTGAGG TGCTGTTCCAGGTCCTGGCGCTTGAGGAACCTAATGTGAGG < 41bp 0.806309560985774 0.496637721312369 0.42179272 0.21049798 prediction 0.612619121971549 Functional Loss - SPR ENSG00000116096 CDS Human protein_coding chr2:73115694 chr2:73115696 synonymous SNV . 0 23 hm5C_associated_SNPs_53677 0 0 0 0 1 Ribosome 0.500231643193301 0.500231643920489 0 0 hm5C_site_49029 DeepMRMD:0;iRNA_m5C:0 49030 chr3 119462999 119462999 1 + G T LUSC 119462996 + 119462976 119463016 41 CTGAAGAGAGTGGTCGGCGCCAGGTGGAAAAACAGCGCCTG CTGAAGAGAGTGGTCGGCGCCAGTTGGAAAAACAGCGCCTG < 41bp 0.86422292231745 0.557915540833653 0.8749492 0.2896141 prediction 0.612614762967595 Functional Loss - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119462996 chr3:119462999 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_53678 0 0 0 0 0 exosome 0.500231643953975 0.50023164392157 0.7498984 6.48110454193329e-11 hm5C_site_49030 DeepMRMD:0.7498984;iRNA_m5C:6.48110454193329e-11 49031 chr20 20258002 20258002 1 + G T LUAD 20258000 + 20257980 20258020 41 GCCGCCGGAGTCACTATGTACCGGGATGCGATCCTGGCCCA GCCGCCGGAGTCACTATGTACCTGGATGCGATCCTGGCCCA < 41bp 0.848924635765745 0.542627813330731 0.8787395 0.116832614 prediction 0.612593644870027 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20258000 chr20:20258002 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_53679 0 0 0 1 0 nucleus 0.500231643920179 0.500231643599999 0.757479 6.40360653392236e-10 hm5C_site_49031 DeepMRMD:0.757479;iRNA_m5C:6.40360653392236e-10 49032 chr1 161130911 161130911 1 + G T LUSC 161130908 + 161130888 161130928 41 GTAGCACTTCTCTCCGCCGCCTAGGGGGCTTTCCTGGACCC GTAGCACTTCTCTCCGCCGCCTATGGGGCTTTCCTGGACCC < 41bp 0.806296312919882 0.430044793599993 0.39816046 0.11915967 prediction 0.612592625839764 Functional Loss - USP21 ENSG00000143258 CDS Human protein_coding chr1:161130908 chr1:161130911 nonsynonymous SNV 0.981 2 24 hm5C_associated_SNPs_53680 0 0 1 0 0 Cytosol 0.500231643913268 0.500231643639426 0 5.47685452545466e-10 hm5C_site_49032 DeepMRMD:0;iRNA_m5C:5.47685452545466e-10 49033 chr19 13264371 13264371 1 + G T UCEC 13264369 + 13264349 13264389 41 AAAGTCAGCCGCAAACGACGCAGCAGCAGCCTGAGCGACGG AAAGTCAGCCGCAAACGACGCATCAGCAGCCTGAGCGACGG < 41bp 0.842320861644271 0.53602530970882 0.16073006 0.00857085 prediction 0.612591103870903 Functional Loss - IER2 ENSG00000160888 CDS Human protein_coding chr19:13264369 chr19:13264371 nonsynonymous SNV 0.780 1 23 hm5C_associated_SNPs_53681 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921097 0 0 hm5C_site_49033 DeepMRMD:0;iRNA_m5C:0 49034 chr3 49749981 49749981 1 + G T CESC 49749979 + 49749959 49749999 41 CATTGAGCACGGTGATCGCACAGGGTCTCTCTTTGCCTTCA CATTGAGCACGGTGATCGCACATGGTCTCTCTTTGCCTTCA < 41bp 0.839364856036048 0.533074853611619 0.9309563 0.6175354 prediction 0.612580004848858 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49749979 chr3:49749981 nonsynonymous SNV 0.112 4 23 hm5C_associated_SNPs_53682 0 0 1 1 1 Nucleus 0.500231643906761 0.50023153684516 0.6268418 2.14123202280092e-07 hm5C_site_49034 DeepMRMD:0.6268418;iRNA_m5C:2.14123202280092e-07 49035 chr9 133556657 133556657 1 + G T THCA 133556654 + 133556634 133556674 41 GAGGACTTCCACCCGGCGGACTCGGCGGCTGGCCCCGCGGG GAGGACTTCCACCCGGCGGACTCTGCGGCTGGCCCCGCGGG < 41bp 0.874086704951782 0.567797574047469 0.70916176 0.35154247 prediction 0.612578261808627 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133556654 chr9:133556657 synonymous SNV . 0 24 hm5C_associated_SNPs_53683 0 0 0 0 1 exosome 0.500231644020264 0.500231657935356 0.41832352 0 hm5C_site_49035 DeepMRMD:0.41832352;iRNA_m5C:0 49036 chr1 22333468 22333468 1 + A C rs143596163 22333464 + 22333444 22333484 41 CCCGCTGGTGACATCCTTCCCAACAAGACACCCTGCTACAT CCCGCTGGTGACATCCTTCCCAACCAGACACCCTGCTACAT < 41bp 0.806284013789601 0.405762351206819 0.031193048 0.014121234 prediction 0.612568027579203 Functional Loss - CELA3A ENSG00000142789 CDS Human protein_coding chr1:22333464 chr1:22333468 nonsynonymous SNV 0.325 1 25 hm5C_associated_SNPs_53684 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_49036 DeepMRMD:0;iRNA_m5C:0 49037 chr1 3328607 3328607 1 + G T LUAD 3328604 + 3328584 3328624 41 ACACCACCACGGGGACCGACCTGGACACGACCACGGGGACG ACACCACCACGGGGACCGACCTGTACACGACCACGGGGACG < 41bp 0.806283888119104 0.463917178340631 0.6658567 0.33528218 prediction 0.612567776238208 Functional Loss - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3328604 chr1:3328607 nonsynonymous SNV 0.621 4 24 hm5C_associated_SNPs_53685 0 0 0 0 0 Nucleus 0.500230644836091 0.50023164227508 0.3317134 0 hm5C_site_49037 DeepMRMD:0.3317134;iRNA_m5C:0 49038 chr17 4837210 4837210 1 + A C rs2586529 4837206 + 4837186 4837226 41 GCCCGCCCCCAGCCCGACCACCCCAGAGCCCACCTCAGAGC GCCCGCCCCCAGCCCGACCACCCCCGAGCCCACCTCAGAGC < 41bp 0.806269345511726 0.425284396801612 0.11955786 0.045743793 prediction 0.612538691023453 Functional Loss - GP1BA ENSG00000185245 CDS Human protein_coding chr17:4837206 chr17:4837210 synonymous SNV . 0 25 hm5C_associated_SNPs_53686 0 0 0 0 0 exosome 0.500231384987854 0.500231587692756 0 0 hm5C_site_49038 DeepMRMD:0;iRNA_m5C:0 49039 chr7 100320746 100320746 1 + G T ACC 100320743 + 100320723 100320763 41 CACAGGGGAGGCCTGCAGGACAGGGGACAGATGACCAGGTG CACAGGGGAGGCCTGCAGGACAGTGGACAGATGACCAGGTG < 41bp 0.87896483141949 0.572711021041342 0.7584059 0.2918464 prediction 0.612507620756297 Functional Loss - EPO ENSG00000130427 CDS Human protein_coding chr7:100320743 chr7:100320746 nonsynonymous SNV 0.991 2 24 hm5C_associated_SNPs_53687 0 0 0 0 0 exosome 0.50023164395341 0.500231572355483 0.5168118 1.43195854951372e-07 hm5C_site_49039 DeepMRMD:0.5168118;iRNA_m5C:1.43195854951372e-07 49040 chr19 1220649 1220649 1 + G T LUAD 1220646 + 1220626 1220666 41 GCTCCCCGGCTTTCCAGCCGCCCGAGATTGCCAACGGCCTG GCTCCCCGGCTTTCCAGCCGCCCTAGATTGCCAACGGCCTG < 41bp 0.806245021291773 0.437344035504729 0.3267636 0.16497767 prediction 0.612490042583546 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220646 chr19:1220649 stopgain 0.877 1 24 hm5C_associated_SNPs_53688 0 0 1 0 2 Ribosome 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_49040 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 49041 chr19 57956022 57956022 1 + G T UCEC 57956020 + 57956000 57956040 41 AGGCTCATCTGGTTGGTCACCAGAAAATCCATACTGGAGAA AGGCTCATCTGGTTGGTCACCATAAAATCCATACTGGAGAA < 41bp 0.806240540584656 0.4829331727989 0.90826684 0.12635267 prediction 0.612481081169312 Functional Loss - ZNF749 ENSG00000186230 CDS Human protein_coding chr19:57956020 chr19:57956022 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_53689 0 0 0 0 0 exosome 0.50023164388957 0.500231636250776 0.81653368 1.52775880835065e-08 hm5C_site_49041 DeepMRMD:0.81653368;iRNA_m5C:1.52775880835065e-08 49042 chr9 136891030 136891030 1 + G T rs190049012 136891027 + 136891007 136891047 41 CCTGGGGGCCCCTTCCGGTCCCGGGGCTGACGCCTGGCGGC CCTGGGGGCCCCTTCCGGTCCCGTGGCTGACGCCTGGCGGC < 41bp 0.884992106207036 0.57876463617082 0.9325493 0.75413406 prediction 0.612454940072434 Functional Loss - LINC00094 ENSG00000235106 ncRNA_exonic Human protein_coding chr9:136891027 chr9:136891030 . . 0 24 hm5C_associated_SNPs_53690 0 0 1 0 1 exosome 0.500220796154065 0.500231643920659 0.35683048 0 hm5C_site_49042 DeepMRMD:0.35683048;iRNA_m5C:0 49043 chr11 120096386 120096386 1 + G T LUAD 120096384 + 120096364 120096404 41 CTTCAGGATGTGAAGGTCTTCCGGGCCCTGATCCTGGGGGA CTTCAGGATGTGAAGGTCTTCCTGGCCCTGATCCTGGGGGA < 41bp 0.806221793220128 0.471350071160492 0.53039074 0.12329915 prediction 0.612443586440256 Functional Loss - OAF ENSG00000184232 CDS Human protein_coding chr11:120096384 chr11:120096386 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_53691 0 0 0 0 1 Endoplasmic reticulum 0.500231643773234 0.500231643921092 0.0607814799999999 0 hm5C_site_49043 DeepMRMD:0.0607814799999999;iRNA_m5C:0 49044 chr22 50928059 50928059 1 + G T COAD 50928056 + 50928036 50928076 41 CAGGACCTGGCCATGCTGCCCTGGGTGCGGGAGTTCAAGTA CAGGACCTGGCCATGCTGCCCTGTGTGCGGGAGTTCAAGTA < 41bp 0.873333229191965 0.567119008466952 0.28232712 0.10711843 prediction 0.612428441450026 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928056 chr22:50928059 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_53692 0 0 0 0 3 exosome 0.500231647542236 0.500231643921092 0 7.24228632620338e-09 hm5C_site_49044 DeepMRMD:0;iRNA_m5C:7.24228632620338e-09 49045 chr5 167957160 167957160 1 + G T LUSC 167957157 + 167957137 167957177 41 CGCGATCTGGTCAACGTGGCCAAGAAGCGCACCAACATCAT CGCGATCTGGTCAACGTGGCCAATAAGCGCACCAACATCAT < 41bp 0.841911279451659 0.535723536315254 0.26609287 0.21850014 prediction 0.61237548627281 Functional Loss - FBLL1 ENSG00000188573 CDS Human protein_coding chr5:167957157 chr5:167957160 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_53693 0 0 0 0 0 exosome 0.500231578776932 0.500231636889607 0 0 hm5C_site_49045 DeepMRMD:0;iRNA_m5C:0 49046 chr19 41509945 41509945 1 + G T HNSC 41509942 + 41509922 41509962 41 GGGACGTCTTCACGGTACACCTGGGACCGAGGCCCGTGGTC GGGACGTCTTCACGGTACACCTGTGACCGAGGCCCGTGGTC < 41bp 0.806185685370774 0.414104026372602 0.23089895 0.04751721 prediction 0.612371370741549 Functional Loss - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41509942 chr19:41509945 stopgain 0.818 1 24 hm5C_associated_SNPs_53694 0 0 0 0 1 Nucleus 0.500238097978611 0.500236738382326 0 2.71919256955577e-06 hm5C_site_49046 DeepMRMD:0;iRNA_m5C:2.71919256955577e-06 49047 chr12 56030774 56030774 1 + G T THYM 56030772 + 56030752 56030792 41 CCCTGTTCTGGGTGGTGCTTCTGGTCTACCTGGTCACCTTG CCCTGTTCTGGGTGGTGCTTCTTGTCTACCTGGTCACCTTG < 41bp 0.806179185804311 0.493108959220578 0.73168874 0.12640285 prediction 0.612358371608621 Functional Loss - OR10P1 ENSG00000175398 CDS Human protein_coding chr12:56030772 chr12:56030774 synonymous SNV . 0 23 hm5C_associated_SNPs_53695 0 0 0 0 0 exosome 0.500231643923329 0.50023164392236 0.46337748 1.93689508876105e-12 hm5C_site_49047 DeepMRMD:0.46337748;iRNA_m5C:1.93689508876105e-12 49048 chr20 56139401 56139401 1 + G T UCEC 56139399 + 56139379 56139419 41 CATTGATGAGCCGCTAGCTTCAGGTGTCACCATCACGTCCT CATTGATGAGCCGCTAGCTTCATGTGTCACCATCACGTCCT < 41bp 0.854953538792463 0.548779420108207 0.87415266 0.1928693 prediction 0.612348237368512 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56139399 chr20:56139401 nonsynonymous SNV 0.005 3 23 hm5C_associated_SNPs_53696 0 0 1 0 1 exosome 0.500231643479729 0.500219554458265 0.74830532 2.41780429273142e-05 hm5C_site_49048 DeepMRMD:0.74830532;iRNA_m5C:2.41780429273142e-05 49049 chr6 43250928 43250928 1 + G T UCEC 43250926 + 43250906 43250946 41 GCAGACGATCAGAAGGAGTCCAGGGGCCGGGCCTCCATGGC GCAGACGATCAGAAGGAGTCCATGGGCCGGGCCTCCATGGC < 41bp 0.847734229238087 0.54156814725963 0.8909043 0.45368034 prediction 0.612332163956914 Functional Loss - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43250926 chr6:43250928 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53697 0 0 0 0 0 exosome 0.500231643746305 0.500231653535564 0.7818086 0 hm5C_site_49049 DeepMRMD:0.7818086;iRNA_m5C:0 49050 chr17 21731020 21731020 1 + G T LUAD 21731017 + 21730997 21731037 41 AAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCC AAAATGTGAAGGCCAAGATCCAATATAAAGAAGGCATCCCC < 41bp 0.806162559721159 0.457085176901503 0.7388431 0.24634844 prediction 0.612325119442317 Functional Loss - UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731017 chr17:21731020 nonsynonymous SNV 0.433 1 24 hm5C_associated_SNPs_53698 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.4776862 0 hm5C_site_49050 DeepMRMD:0.4776862;iRNA_m5C:0 49051 chr2 31483477 31483477 1 + G T HNSC 31483475 + 31483455 31483495 41 GGACATCTCTGATGAGTTCTCAGAAGTCATCAAAGCCCTCA GGACATCTCTGATGAGTTCTCATAAGTCATCAAAGCCCTCA < 41bp 0.806152459140323 0.494426244957073 0.7851821 0.19295147 prediction 0.612304918280645 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31483475 chr2:31483477 stopgain 0.994 1 23 hm5C_associated_SNPs_53699 0 0 0 0 0 exosome 0.500231643981443 0.500231649012023 0.5703642 0 hm5C_site_49051 DeepMRMD:0.5703642;iRNA_m5C:0 49052 chr7 31142906 31142906 1 + G T UCEC 31142904 + 31142884 31142924 41 ACTATTCGGAATCCACTACACAGTATTTGCCTTCTCCCCAG ACTATTCGGAATCCACTACACATTATTTGCCTTCTCCCCAG < 41bp 0.806148668280018 0.485581448909928 0.10089058 0.15354788 prediction 0.612297336560037 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31142904 chr7:31142906 nonsynonymous SNV 0.690 2 23 hm5C_associated_SNPs_53700 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_49052 DeepMRMD:0;iRNA_m5C:0 49053 chr1 228238514 228238514 1 + G T COAD 228238511 + 228238491 228238531 41 TGGAAGTGGGGTGGCTGTAGCGAGGACATCGAGTTTGGTGG TGGAAGTGGGGTGGCTGTAGCGATGACATCGAGTTTGGTGG < 41bp 0.806127454004805 0.420355566435204 0.90014046 0.2708093 prediction 0.612254908009611 Functional Loss - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228238511 chr1:228238514 nonsynonymous SNV 0.976 1 24 hm5C_associated_SNPs_53701 0 0 0 0 0 exosome 0.500231642847654 0.500231638393869 0.80028092 8.9075704590158e-09 hm5C_site_49053 DeepMRMD:0.80028092;iRNA_m5C:8.9075704590158e-09 49054 chr7 134363709 134363709 1 + G T LUSC 134363706 + 134363686 134363726 41 CTGTTGGGCCTCATCAGTTCCTGGGTGACCAAGAGGCGATC CTGTTGGGCCTCATCAGTTCCTGTGTGACCAAGAGGCGATC < 41bp 0.868932981776384 0.562823426053725 0.8886354 0.10347879 prediction 0.612219111445319 Functional Loss - BPGM ENSG00000172331 CDS Human protein_coding chr7:134363706 chr7:134363709 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_53702 0 0 1 0 0 Ribosome 0.500231676496098 0.500231667830524 0.7772708 1.73311476281413e-08 hm5C_site_49054 DeepMRMD:0.7772708;iRNA_m5C:1.73311476281413e-08 49055 chr6 40347099 40347099 1 + G T rs187083545 40347096 + 40347076 40347116 41 GCACCGCCATTTTCTAGGAACTGGGAAGCCCCCCCACCCCT GCACCGCCATTTTCTAGGAACTGTGAAGCCCCCCCACCCCT < 41bp 0.87157157419278 0.565482039957378 0.8376193 0.15525734 prediction 0.612179068470804 Functional Loss - TDRG1 ENSG00000204091 ncRNA_exonic Human antisense chr6:40347096 chr6:40347099 . . 0 24 hm5C_associated_SNPs_53703 0 0 0 0 1 unknown 0.500231643921085 0.500231643921092 0.6752386 0 hm5C_site_49055 DeepMRMD:0.6752386;iRNA_m5C:0 49056 chr1 34330145 34330145 1 + G T COAD 34330143 + 34330123 34330163 41 CTGAAGAGGGAGAACCCGAACTGGTCGGTGGTGCAGGTGGC CTGAAGAGGGAGAACCCGAACTTGTCGGTGGTGCAGGTGGC < 41bp 0.82292441092745 0.516836960100838 0.38275152 0.2607928 prediction 0.612174901653222 Functional Loss - HMGB4 ENSG00000176256 CDS Human protein_coding chr1:34330143 chr1:34330145 nonsynonymous SNV 0.372 3 23 hm5C_associated_SNPs_53704 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_49056 DeepMRMD:0;iRNA_m5C:0 49057 chr10 71868962 71868962 1 + A C COAD 71868958 + 71868938 71868978 41 GCGTTCCCGCCTTTCCCCAGCGGCAGGTAAGATGCAGTTCC GCGTTCCCGCCTTTCCCCAGCGGCCGGTAAGATGCAGTTCC < 41bp 0.806081303279731 0.408455580798282 0.8718256 0.8082057 prediction 0.612162606559463 Functional Loss - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71868958 chr10:71868962 synonymous SNV . 0 25 hm5C_associated_SNPs_53705 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.1272398 0 hm5C_site_49057 DeepMRMD:0.1272398;iRNA_m5C:0 49058 chr15 85488006 85488006 1 + G T THCA 85488003 + 85487983 85488023 41 ACAGGGATCCTCTACATGCCCAGGGGGGCTGAAGTTGACTG ACAGGGATCCTCTACATGCCCAGTGGGGCTGAAGTTGACTG < 41bp 0.806069147669473 0.429806709825101 0.9472031 0.20530474 prediction 0.612138295338946 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85488003 chr15:85488006 nonsynonymous SNV 0.435 1 24 hm5C_associated_SNPs_53706 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231645384675 0.8944062 0 hm5C_site_49058 DeepMRMD:0.8944062;iRNA_m5C:0 49059 chr8 23148978 23148978 1 + G T rs2272760 23148975 + 23148955 23148995 41 GGAGAGAAGGACCTTGCCCACGTGGTAGAGATCTATGACTT GGAGAGAAGGACCTTGCCCACGTTGTAGAGATCTATGACTT < 41bp 0.806049135127803 0.431366524622625 0.5360525 0.14102063 prediction 0.612098270255605 Functional Loss - R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23148975 chr8:23148978 synonymous SNV . 0 24 hm5C_associated_SNPs_53707 0 0 1 0 1 Cytosol 0.50023164392146 0.500231643921093 0.0721050000000001 7.35189686906779e-13 hm5C_site_49059 DeepMRMD:0.0721050000000001;iRNA_m5C:7.35189686906779e-13 49060 chr1 55136510 55136510 1 + G T LUAD 55136508 + 55136488 55136528 41 CCTGGGCATGCGGGAGAGGTCGGAGCTGGTGAACGTGTGTG CCTGGGCATGCGGGAGAGGTCGTAGCTGGTGAACGTGTGTG < 41bp 0.845783335827467 0.539746868467447 0.917227 0.43312055 prediction 0.61207293472004 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55136508 chr1:55136510 stopgain 0.062 1 23 hm5C_associated_SNPs_53708 0 0 0 0 2 exosome 0.500231643921084 0.500231643836147 0.834454 1.69872116373426e-10 hm5C_site_49060 DeepMRMD:0.834454;iRNA_m5C:1.69872116373426e-10 49061 chr13 108922737 108922737 1 + G T UCEC 108922735 + 108922715 108922755 41 GGCAACTCCAGTCAGAACAGCAGAAATAAGCGTGCCGTTCA GGCAACTCCAGTCAGAACAGCATAAATAAGCGTGCCGTTCA < 41bp 0.806022595880918 0.485546995466172 0.88730395 0.21877977 prediction 0.612045191761837 Functional Loss - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108922735 chr13:108922737 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_53709 0 0 0 0 2 Endoplasmic reticulum 0.500231653175101 0.500231643962854 0.7746079 1.84244934864353e-08 hm5C_site_49061 DeepMRMD:0.7746079;iRNA_m5C:1.84244934864353e-08 49062 chr11 123894341 123894341 1 + G T LUSC 123894339 + 123894319 123894359 41 GGACATTGGGCTAGTGGCCTCGGGCTGCTTTCTCCTGATAG GGACATTGGGCTAGTGGCCTCGTGCTGCTTTCTCCTGATAG < 41bp 0.822724596460023 0.516705781240182 0.8469303 0.11276004 prediction 0.612037630439683 Functional Loss - OR10G9 ENSG00000236981 CDS Human protein_coding chr11:123894339 chr11:123894341 nonsynonymous SNV 0.590 2 23 hm5C_associated_SNPs_53710 0 0 0 0 0 unknown 0.50023164387669 0.500231624907157 0.6938606 3.79390661109369e-08 hm5C_site_49062 DeepMRMD:0.6938606;iRNA_m5C:3.79390661109369e-08 49063 chr4 188924029 188924029 1 + G T HNSC 188924027 + 188924007 188924047 41 GGCCTGGGTGGAAGAGCCCCCAGTGGGGCTAAGCCCAGGCA GGCCTGGGTGGAAGAGCCCCCATTGGGGCTAAGCCCAGGCA < 41bp 0.819796545165942 0.513780393756503 0.32263708 0.1458762 prediction 0.612032302818877 Functional Loss - ZFP42 ENSG00000179059 CDS Human protein_coding chr4:188924027 chr4:188924029 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_53711 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921093 0 0 hm5C_site_49063 DeepMRMD:0;iRNA_m5C:0 49064 chr16 28878225 28878225 1 + G T THYM 28878222 + 28878202 28878242 41 CCTGACCCAGCCGGAGTGGGCCGGGGAGGAGGGGTGGCTGG CCTGACCCAGCCGGAGTGGGCCGTGGAGGAGGGGTGGCTGG < 41bp 0.806013834105681 0.439532343693411 0.92239296 0.8287159 prediction 0.612027668211361 Functional Loss - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28878222 chr16:28878225 synonymous SNV . 0 24 hm5C_associated_SNPs_53712 0 0 1 0 0 Cytosol 0.500231643920991 0.500231643921092 0.18735412 0 hm5C_site_49064 DeepMRMD:0.18735412;iRNA_m5C:0 49065 chr9 17791274 17791274 1 + G T LUAD 17791271 + 17791251 17791291 41 CTGCACTTGTGCAAGCTCAGCTGGAGTACCACAAGCAGGCA CTGCACTTGTGCAAGCTCAGCTGTAGTACCACAAGCAGGCA < 41bp 0.879432603254823 0.573419115297195 0.31191945 0.1609639 prediction 0.612026975915257 Functional Loss - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17791271 chr9:17791274 stopgain 0.996 1 24 hm5C_associated_SNPs_53713 0 0 0 0 2 nucleus 0.500231615198145 0.500229293363356 0 4.64366957841911e-06 hm5C_site_49065 DeepMRMD:0;iRNA_m5C:4.64366957841911e-06 49066 chr1 86047742 86047742 1 + G T COAD 86047739 + 86047719 86047759 41 GCTGCATTCCTCTGTGTCCCCAAGAACTATCTCTCCCCAAC GCTGCATTCCTCTGTGTCCCCAATAACTATCTCTCCCCAAC < 41bp 0.882276560630451 0.57626904252381 0.89269054 0.25163496 prediction 0.612015036213281 Functional Loss - CYR61 ENSG00000142871 CDS Human protein_coding chr1:86047739 chr1:86047742 stopgain 1.000 1 24 hm5C_associated_SNPs_53714 0 0 1 0 0 Endoplasmic reticulum 0.500546805254139 0.500231643923 0.78538108 0.000630322662278138 hm5C_site_49066 DeepMRMD:0.78538108;iRNA_m5C:0.000630322662278138 49067 chr12 7867828 7867828 1 + G T LUSC 7867825 + 7867805 7867845 41 TTGATAAAGAACCTTAGTAACTTGACTATCAACGCTAGTAG TTGATAAAGAACCTTAGTAACTTTACTATCAACGCTAGTAG < 41bp 0.805998040182968 0.45271711305634 0.16444206 0.07918757 prediction 0.611996080365936 Functional Loss - DPPA3 ENSG00000187569 CDS Human protein_coding chr12:7867825 chr12:7867828 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_53715 0 0 0 0 1 unknown 0.500231643919292 0.500233672992523 0 0 hm5C_site_49067 DeepMRMD:0;iRNA_m5C:0 49068 chr1 47282730 47282730 1 + G T LUAD 47282727 + 47282707 47282747 41 GTGTTGCTGGCAGGGATGATCTGGGCAAAATGACTTATCTG GTGTTGCTGGCAGGGATGATCTGTGCAAAATGACTTATCTG < 41bp 0.88060045835287 0.57460930147312 0.82080793 0.22087094 prediction 0.611982313759501 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47282727 chr1:47282730 nonsynonymous SNV 0.890 3 24 hm5C_associated_SNPs_53716 0 0 0 0 1 exosome 0.500231644639776 0.500231908954429 0.64161586 0 hm5C_site_49068 DeepMRMD:0.64161586;iRNA_m5C:0 49069 chr22 21272358 21272358 1 + G T COAD 21272356 + 21272336 21272376 41 CCGCGATTCTTCCACCTGCCCTGGGGACTATGTGCTGTCGG CCGCGATTCTTCCACCTGCCCTTGGGACTATGTGCTGTCGG < 41bp 0.837612071519919 0.531626693930744 0.3456574 0.07414818 prediction 0.611970755178349 Functional Loss - CRKL ENSG00000099942 CDS Human protein_coding chr22:21272356 chr22:21272358 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_53717 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_49069 DeepMRMD:0;iRNA_m5C:0 49070 chr12 133197629 133197629 1 + G T SARC 133197626 + 133197606 133197646 41 TTATCAACTGGGACTGTGACCTGGACCTGCCTGCATCGGAG TTATCAACTGGGACTGTGACCTGTACCTGCCTGCATCGGAG < 41bp 0.880600937249341 0.57463276900565 0.6229741 0.12079933 prediction 0.611936336487381 Functional Loss - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197626 chr12:133197629 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_53718 0 0 0 0 1 exosome 0.500231484544176 0.500231643551473 0.2459482 0 hm5C_site_49070 DeepMRMD:0.2459482;iRNA_m5C:0 49071 chr10 3189395 3189395 1 + G T STAD 3189392 + 3189372 3189412 41 TTGATACGCGGGAGCTTCCTCAGGATGGGTTTGATATCTGT TTGATACGCGGGAGCTTCCTCAGTATGGGTTTGATATCTGT < 41bp 0.864125357777215 0.558157465245386 0.8808882 0.27862215 prediction 0.611935785063658 Functional Loss - PITRM1 ENSG00000107959 CDS Human protein_coding chr10:3189392 chr10:3189395 synonymous SNV . 0 24 hm5C_associated_SNPs_53719 0 0 0 0 0 Endoplasmic reticulum 0.500231643897043 0.500231643921662 0.7617764 0 hm5C_site_49071 DeepMRMD:0.7617764;iRNA_m5C:0 49072 chr18 14763841 14763841 1 + G T LUSC 14763838 + 14763818 14763858 41 ATGTCTGGGGAAAGCAACATCTGGAAAGTTTGAACAGTCAA ATGTCTGGGGAAAGCAACATCTGTAAAGTTTGAACAGTCAA < 41bp 0.805951670919001 0.449620234846879 0.28041518 0.16277847 prediction 0.611903341838003 Functional Loss - ANKRD30B ENSG00000180777 CDS Human protein_coding chr18:14763838 chr18:14763841 nonsynonymous SNV 0.001 3 24 hm5C_associated_SNPs_53720 0 0 0 0 0 exosome 0.500231643920394 0.500231643923258 0 0 hm5C_site_49072 DeepMRMD:0;iRNA_m5C:0 49073 chr17 20319895 20319895 1 + G T LUSC 20319892 + 20319872 20319912 41 GCCGGATCAGGTCCTGGGGCCGGGGGAAGCACTTGCTGTCA GCCGGATCAGGTCCTGGGGCCGGTGGAAGCACTTGCTGTCA < 41bp 0.865060414407444 0.559114572489884 0.909441 0.8604367 prediction 0.611891683835119 Functional Loss - USP32P3 ENSG00000189423;ENSG00000237911 ncRNA_exonic Human other chr17:20319892 chr17:20319895 . . 0 24 hm5C_associated_SNPs_53721 0 0 0 4 1 unknown 0.500231644075424 0.500231643950993 0.0980086 2.48863152307877e-10 hm5C_site_49073 DeepMRMD:0.0980086;iRNA_m5C:2.48863152307877e-10 49074 chr11 63978540 63978540 1 + G T LIHC 63978537 + 63978517 63978557 41 CCCTCAGGCATCCGGCACCCCGAGGAGCTGTCCCTGCTCCG CCCTCAGGCATCCGGCACCCCGATGAGCTGTCCCTGCTCCG < 41bp 0.805942751725831 0.409925391421249 0.9016513 0.3445987 prediction 0.611885503451661 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63978537 chr11:63978540 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_53722 0 0 1 0 1 Cytosol 0.500230278353481 0.500231643920231 0.8033026 0 hm5C_site_49074 DeepMRMD:0.8033026;iRNA_m5C:0 49075 chr19 43858435 43858435 1 + G T LUAD 43858432 + 43858412 43858452 41 GAGCCCCGCGTCACTGAGCACCGGATGGGCCCCGGCCTCTC GAGCCCCGCGTCACTGAGCACCGTATGGGCCCCGGCCTCTC < 41bp 0.887271642432917 0.581335193944497 0.76090586 0.32886675 prediction 0.61187289697684 Functional Loss - CD177 ENSG00000204936 CDS Human protein_coding chr19:43858432 chr19:43858435 synonymous SNV . 0 24 hm5C_associated_SNPs_53723 0 0 1 0 1 exosome 0.50023164388375 0.500231643921102 0.52181172 0 hm5C_site_49075 DeepMRMD:0.52181172;iRNA_m5C:0 49076 chr16 78056600 78056600 1 + G T UCEC 78056597 + 78056577 78056617 41 CCAGACCACCAGCCACACATCCAGATTAAAAGCCAGGAAGC CCAGACCACCAGCCACACATCCATATTAAAAGCCAGGAAGC < 41bp 0.805936144408639 0.445725687048285 0.31051216 0.06195098 prediction 0.611872288817277 Functional Loss - CLEC3A ENSG00000166509 CDS Human protein_coding chr16:78056597 chr16:78056600 nonsynonymous SNV 0.068 1 24 hm5C_associated_SNPs_53724 0 0 0 0 1 unknown 0.500231643916789 0.500231643921091 0 0 hm5C_site_49076 DeepMRMD:0;iRNA_m5C:0 49077 chr6 170627006 170627006 1 + G T LUAD 170627004 + 170626984 170627024 41 AGCATAACTGTCTTGGGATTCTGGGGGAAGACACTGATTAC AGCATAACTGTCTTGGGATTCTTGGGGAAGACACTGATTAC < 41bp 0.807433491123589 0.501502717846074 0.9002253 0.5739805 prediction 0.611861546555031 Functional Loss - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170627004 chr6:170627006 synonymous SNV . 0 23 hm5C_associated_SNPs_53725 0 0 1 0 0 Cytosol 0.50023164391668 0.500231644072579 0.6524896 0 hm5C_site_49077 DeepMRMD:0.6524896;iRNA_m5C:0 49078 chr11 111386831 111386831 1 + A T LUAD 111386827 + 111386807 111386847 41 CTGAGGAGAAAGTAAAGTATCTCCAAAAGGTAGGCCAATAT CTGAGGAGAAAGTAAAGTATCTCCTAAAGGTAGGCCAATAT < 41bp 0.805920591443378 0.483604462257569 0.95403767 0.14625406 prediction 0.611841182886755 Functional Loss - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111386827 chr11:111386831 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_53726 0 0 0 0 2 Nucleus 0.500231645019193 0.500231643929881 0.90807534 2.17862439200189e-09 hm5C_site_49078 DeepMRMD:0.90807534;iRNA_m5C:2.17862439200189e-09 49079 chr8 42179461 42179461 1 + G T LIHC 42179458 + 42179438 42179478 41 CAGGAGACTAAGGGAAAAACCTCGAGGTAAGTGGGGTTCTG CAGGAGACTAAGGGAAAAACCTCTAGGTAAGTGGGGTTCTG < 41bp 0.856318396731205 0.550425096994564 0.8124504 0.8789886 prediction 0.611786599473281 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179458 chr8:42179461 nonsynonymous SNV 0.037 3 24 hm5C_associated_SNPs_53727 0 0 1 0 2 Nucleus 0.50023164392051 0.50023164392011 0 7.99138533125188e-13 hm5C_site_49079 DeepMRMD:0;iRNA_m5C:7.99138533125188e-13 49080 chr3 99514443 99514443 1 + A C rs140830156 99514439 + 99514419 99514459 41 TCCAGGACCCCCAGGCCCTCCAGGACCTCCAGGACCCCCAG TCCAGGACCCCCAGGCCCTCCAGGCCCTCCAGGACCCCCAG < 41bp 0.889252188999793 0.583359251981638 0.42954186 0.65328443 prediction 0.61178587403631 Functional Loss - COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99514439 chr3:99514443 synonymous SNV . 0 25 hm5C_associated_SNPs_53728 0 0 0 0 0 Cytosol 0.500231643911756 0.500231643920953 0 0 hm5C_site_49080 DeepMRMD:0;iRNA_m5C:0 49081 chr9 131289510 131289510 1 + G T UCEC 131289508 + 131289488 131289528 41 TGCAGTGGTACCAGCAGCTGCAGGATGCTTCCATGCAGTGT TGCAGTGGTACCAGCAGCTGCATGATGCTTCCATGCAGTGT < 41bp 0.805876253649431 0.49384599482847 0.912596 0.08913976 prediction 0.611752507298862 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131289508 chr9:131289510 nonsynonymous SNV 0.957 4 23 hm5C_associated_SNPs_53729 0 0 1 0 2 Cytosol 0.500231224887153 0.500230466713277 0.825192 1.51634775158449e-06 hm5C_site_49081 DeepMRMD:0.825192;iRNA_m5C:1.51634775158449e-06 49082 chr2 108487260 108487260 1 + G T LUAD 108487257 + 108487237 108487277 41 GCATTTCGGAACCAGGAAATCAAGAAAAGGAAAGTGAAAAG GCATTTCGGAACCAGGAAATCAATAAAAGGAAAGTGAAAAG < 41bp 0.805873386299584 0.456951284471371 0.79325736 0.64916587 prediction 0.611746772599169 Functional Loss - RGPD4 ENSG00000196862 CDS Human protein_coding chr2:108487257 chr2:108487260 stopgain 0.813 0 24 hm5C_associated_SNPs_53730 0 0 0 0 0 membrane 0.500231643921137 0.500231645410085 0.28818298 0 hm5C_site_49082 DeepMRMD:0.28818298;iRNA_m5C:0 49083 chr19 6937293 6937293 1 + G T LUAD 6937291 + 6937271 6937311 41 CCTTTGCCCAGCTCTTCATCCTGGGCTGCTCCTGGGTGCTG CCTTTGCCCAGCTCTTCATCCTTGGCTGCTCCTGGGTGCTG < 41bp 0.837418947373649 0.531547264349791 0.5096579 0.07006058 prediction 0.611743366047717 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6937291 chr19:6937293 synonymous SNV . 0 23 hm5C_associated_SNPs_53731 0 0 0 0 1 exosome 0.500231644753072 0.500231643921093 0.0193158 1.66395897061022e-09 hm5C_site_49083 DeepMRMD:0.0193158;iRNA_m5C:1.66395897061022e-09 49084 chrX 1501334 1501334 1 + A C LUSC 1501330 + 1501310 1501350 41 CCTGGAGGAGTGTCTGGTGACTGAAGTACAGGTCGTGCAGA CCTGGAGGAGTGTCTGGTGACTGACGTACAGGTCGTGCAGA < 41bp 0.879927042510091 0.574056528916034 0.22795612 0.16654915 prediction 0.611741027188113 Functional Loss - IL3RA ENSG00000185291 CDS Human protein_coding chrX:1501330 chrX:1501334 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_53732 0 0 0 0 1 cytosol 0.500231642562505 0.500231643874158 0 0 hm5C_site_49084 DeepMRMD:0;iRNA_m5C:0 49085 chr3 133473450 133473450 1 + G T LUAD 133473447 + 133473427 133473467 41 CACGGGTCTAGGCAGGTCCGCTGGGTGGAACATCCCCATAG CACGGGTCTAGGCAGGTCCGCTGTGTGGAACATCCCCATAG < 41bp 0.805847883847211 0.419902887352499 0.8773261 0.12023184 prediction 0.611695767694421 Functional Loss - TF ENSG00000091513 CDS Human protein_coding chr3:133473447 chr3:133473450 nonsynonymous SNV 0.108 4 24 hm5C_associated_SNPs_53733 0 0 1 0 1 Cytosol 0.500231643921093 0.500231675748331 0.7546522 0 hm5C_site_49085 DeepMRMD:0.7546522;iRNA_m5C:0 49086 chr17 42979850 42979850 1 + G T COAD 42979847 + 42979827 42979867 41 TGCAGCTTGGGGGTCCAAGGCTCGGCTGCCTCTTCCAGACA TGCAGCTTGGGGGTCCAAGGCTCTGCTGCCTCTTCCAGACA < 41bp 0.882992168632931 0.577152001556756 0.62305605 0.5325035 prediction 0.61168033415235 Functional Loss - CCDC103 ENSG00000167131 CDS Human protein_coding chr17:42979847 chr17:42979850 nonsynonymous SNV 0.395 3 24 hm5C_associated_SNPs_53734 0 0 0 0 0 exosome 0.500231643921092 0.500231644030666 0.1811051 0 hm5C_site_49086 DeepMRMD:0.1811051;iRNA_m5C:0 49087 chr14 59014655 59014655 1 + G T SKCM 59014652 + 59014632 59014672 41 GGGGGCAGATACCTTCTGAACGGGAAGAGACAGCCAGCACA GGGGGCAGATACCTTCTGAACGGTAAGAGACAGCCAGCACA < 41bp 0.864382952725789 0.558548442515705 0.60821176 0.22878224 prediction 0.611669020420168 Functional Loss - KIAA0586 ENSG00000100578 CDS Human protein_coding chr14:59014652 chr14:59014655 synonymous SNV . 0 24 hm5C_associated_SNPs_53735 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921086 0.21642352 1.17683640610267e-14 hm5C_site_49087 DeepMRMD:0.21642352;iRNA_m5C:1.17683640610267e-14 49088 chr9 139802569 139802569 1 + G T LUSC 139802566 + 139802546 139802586 41 CTCATGCTGACCGAATGTCCCGCGTGCAAAGGCCTGGTCCG CTCATGCTGACCGAATGTCCCGCTTGCAAAGGCCTGGTCCG < 41bp 0.805832670910006 0.423503300574877 0.14145622 0.021417022 prediction 0.611665341820012 Functional Loss - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139802566 chr9:139802569 synonymous SNV . 0 24 hm5C_associated_SNPs_53736 0 0 1 0 1 Ribosome 0.500231643921089 0.500231643921092 0 0 hm5C_site_49088 DeepMRMD:0;iRNA_m5C:0 49089 chrX 140983082 140983082 1 + G T LUSC 140983080 + 140983060 140983100 41 GTCAGCCTTGGCAGGGTTCGCGGATGTGCTTTCCCGACTTG GTCAGCCTTGGCAGGGTTCGCGTATGTGCTTTCCCGACTTG < 41bp 0.845712877973906 0.539881605319245 0.92610234 0.6964955 prediction 0.611662545309321 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983080 chrX:140983082 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_53737 0 0 0 0 1 exosome 0.500231644452727 0.500228595831998 0.45921368 6.09724145994583e-06 hm5C_site_49089 DeepMRMD:0.45921368;iRNA_m5C:6.09724145994583e-06 49090 chr4 25678223 25678223 1 + G T UCEC 25678221 + 25678201 25678241 41 TGCCCCAAGTGCTGCCGCTGCAGCAAGTGCTGCGAGGACTT TGCCCCAAGTGCTGCCGCTGCATCAAGTGCTGCGAGGACTT < 41bp 0.829135384551518 0.523304779031055 0.6924824 0.25718248 prediction 0.611661211040926 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25678221 chr4:25678223 nonsynonymous SNV 0.964 2 23 hm5C_associated_SNPs_53738 0 0 0 0 0 nucleus 0.500231643995331 0.500231643939131 0.3849648 1.12400089236075e-10 hm5C_site_49090 DeepMRMD:0.3849648;iRNA_m5C:1.12400089236075e-10 49091 chr5 175798778 175798778 1 + G T COAD 175798776 + 175798756 175798796 41 TGCAGCGGGAGCTGGGTCTACAGGCTATCGATAACCAGCGG TGCAGCGGGAGCTGGGTCTACATGCTATCGATAACCAGCGG < 41bp 0.805826901291465 0.486248928361608 0.8168938 0.44233853 prediction 0.611653802582929 Functional Loss - ARL10 ENSG00000175414 CDS Human protein_coding chr5:175798776 chr5:175798778 nonsynonymous SNV 0.221 0 23 hm5C_associated_SNPs_53739 0 0 0 0 1 cytosol 0.500231643914143 0.500231645197492 0.6337876 0 hm5C_site_49091 DeepMRMD:0.6337876;iRNA_m5C:0 49092 chr2 114391739 114391739 1 + G T UCEC 114391737 + 114391717 114391757 41 AACCTGAGTGCAGTCAGCCACAGCAGCTGTCCACGTACGCC AACCTGAGTGCAGTCAGCCACATCAGCTGTCCACGTACGCC < 41bp 0.805811204916765 0.492549154110415 0.532264 0.15431032 prediction 0.61162240983353 Functional Loss - RABL2A ENSG00000144134 CDS Human protein_coding chr2:114391737 chr2:114391739 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53740 0 0 0 0 2 Nucleus 0.500233469291188 0.500220372885528 0.0645279999999999 2.61928113192145e-05 hm5C_site_49092 DeepMRMD:0.0645279999999999;iRNA_m5C:2.61928113192145e-05 49093 chr3 49213186 49213186 1 + G T STAD 49213184 + 49213164 49213204 41 TTGTTATTGGGGGTGTGGCCCAGGGCCCCAGTCAAGCCGTG TTGTTATTGGGGGTGTGGCCCATGGCCCCAGTCAAGCCGTG < 41bp 0.821659440958655 0.515848293435288 0.90516543 0.5440437 prediction 0.611622295046735 Functional Loss - KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49213184 chr3:49213186 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53741 0 0 1 0 0 Cytosol 0.500231643921092 0.500231644428351 0.72224346 0 hm5C_site_49093 DeepMRMD:0.72224346;iRNA_m5C:0 49094 chr12 48919740 48919740 1 + G T LUAD 48919737 + 48919717 48919757 41 CTTCTTTGTGTTTGTCACTGCAGGGACTGAAGCCTGCCTTC CTTCTTTGTGTTTGTCACTGCAGTGACTGAAGCCTGCCTTC < 41bp 0.892847666277139 0.587044965293294 0.94390297 0.87121344 prediction 0.61160540196769 Functional Loss - OR8S1 ENSG00000197376 CDS Human protein_coding chr12:48919737 chr12:48919740 nonsynonymous SNV 0.014 4 24 hm5C_associated_SNPs_53742 0 0 0 0 0 unknown 0.500231643712054 0.500260490970287 0.14537906 0 hm5C_site_49094 DeepMRMD:0.14537906;iRNA_m5C:0 49095 chr9 100616495 100616495 1 + G T STAD 100616493 + 100616473 100616513 41 AACCCCAAAAAGTGGCAGAACAGCATCCGCCACAACCTCAC AACCCCAAAAAGTGGCAGAACATCATCCGCCACAACCTCAC < 41bp 0.805799867161537 0.48296549221614 0.21505648 0.14309415 prediction 0.611599734323075 Functional Loss - FOXE1 ENSG00000178919 CDS Human protein_coding chr9:100616493 chr9:100616495 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_53743 0 0 0 0 0 exosome 0.500231643921057 0.500231643919897 0 2.32081021067643e-12 hm5C_site_49095 DeepMRMD:0;iRNA_m5C:2.32081021067643e-12 49096 chr15 23812149 23812149 1 + G T UCEC 23812147 + 23812127 23812167 41 TGCAGGTATTTTGCGGAAGGCAGGGGTAACTGCCCATTTGG TGCAGGTATTTTGCGGAAGGCATGGGTAACTGCCCATTTGG < 41bp 0.83133762593299 0.525538419780468 0.93784153 0.89211667 prediction 0.611598412305043 Functional Loss - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23812147 chr15:23812149 nonsynonymous SNV 0.033 1 23 hm5C_associated_SNPs_53744 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.0914497200000002 0 hm5C_site_49096 DeepMRMD:0.0914497200000002;iRNA_m5C:0 49097 chr20 58519635 58519635 1 + G T SARC 58519633 + 58519613 58519653 41 AGCAAGGCCCCCCACTGCCCCTGGGACCTCAGGGGCACTGA AGCAAGGCCCCCCACTGCCCCTTGGACCTCAGGGGCACTGA < 41bp 0.805786062875633 0.48337374285044 0.8284583 0.13568565 prediction 0.611572125751267 Functional Loss - FAM217B ENSG00000196227 CDS Human protein_coding chr20:58519633 chr20:58519635 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_53745 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.6569166 0 hm5C_site_49097 DeepMRMD:0.6569166;iRNA_m5C:0 49098 chr9 4844632 4844632 1 + A C LUAD 4844628 + 4844608 4844648 41 GCCAGGGAGCAGCAGTACTTCCAGAGGACCTTGGCAGGAAC GCCAGGGAGCAGCAGTACTTCCAGCGGACCTTGGCAGGAAC < 41bp 0.896474828929705 0.590689776614727 0.89994717 0.8638104 prediction 0.611570104629955 Functional Loss - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4844628 chr9:4844632 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_53746 0 0 1 0 0 Cytosol 0.500231643921078 0.50023164392106 0.0722735400000001 3.50830475781549e-14 hm5C_site_49098 DeepMRMD:0.0722735400000001;iRNA_m5C:3.50830475781549e-14 49099 chr7 76062827 76062827 1 + G T SKCM 76062825 + 76062805 76062845 41 AGAGGTCCCCCACCTTCCACCTGGGAGATGCAGCCCACCTC AGAGGTCCCCCACCTTCCACCTTGGAGATGCAGCCCACCTC < 41bp 0.846536620897209 0.540751573698192 0.3522401 0.03176841 prediction 0.611570094398033 Functional Loss - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76062825 chr7:76062827 synonymous SNV . 0 23 hm5C_associated_SNPs_53747 0 0 0 0 1 Ribosome 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_49099 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 49100 chr4 78079767 78079767 1 + G T GBM 78079764 + 78079744 78079784 41 TGTTGAACGTCTACCTGGAACAAGAAGAGAGATTCCAACCT TGTTGAACGTCTACCTGGAACAATAAGAGAGATTCCAACCT < 41bp 0.874983474897024 0.569199161845988 0.2911449 0.039856017 prediction 0.611568626102073 Functional Loss - CCNG2 ENSG00000138764 CDS Human protein_coding chr4:78079764 chr4:78079767 stopgain 0.963 1 24 hm5C_associated_SNPs_53748 0 0 1 0 2 Ribosome 0.500231631374916 0.500231643914561 0 0 hm5C_site_49100 DeepMRMD:0;iRNA_m5C:0 49101 chr3 53222784 53222784 1 + G T STAD 53222781 + 53222761 53222801 41 CTGGACCGGGATGGCCACATCAAGATTGCCGACTTTGGGAT CTGGACCGGGATGGCCACATCAATATTGCCGACTTTGGGAT < 41bp 0.881402950754101 0.575638327046538 0.42977417 0.118861556 prediction 0.611529247415126 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53222781 chr3:53222784 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_53749 0 0 0 0 2 Cytosol 0.500231643820552 0.500231643921092 0 0 hm5C_site_49101 DeepMRMD:0;iRNA_m5C:0 49102 chr12 62979189 62979189 1 + A C UCEC 62979185 + 62979165 62979205 41 ACCTCAAGAAGGCTACATCTCACGAATGGCACTCTCAGTGC ACCTCAAGAAGGCTACATCTCACGCATGGCACTCTCAGTGC < 41bp 0.881980083638038 0.576232460380702 0.025139153 0.009996891 prediction 0.611495246514671 Functional Loss - MON2 ENSG00000061987 CDS Human protein_coding chr12:62979185 chr12:62979189 synonymous SNV . 0 25 hm5C_associated_SNPs_53750 0 0 1 0 1 Nucleus 0.500231645635901 0.50023362385064 0 0 hm5C_site_49102 DeepMRMD:0;iRNA_m5C:0 49103 chr12 34175705 34175705 1 + G T LUAD 34175702 + 34175682 34175722 41 GAGGGCCATTTCTCCCTTTCCCAGGTGGGGTCCCCAACCTG GAGGGCCATTTCTCCCTTTCCCATGTGGGGTCCCCAACCTG < 41bp 0.805746004723713 0.442441360030337 0.8345455 0.24481672 prediction 0.611492009447426 Functional Loss - ALG10 ENSG00000139133 CDS Human protein_coding chr12:34175702 chr12:34175705 nonsynonymous SNV 0.888 1 24 hm5C_associated_SNPs_53751 0 0 1 0 1 Ribosome 0.500231643922542 0.500231643921093 0.669091 2.89945845111106e-12 hm5C_site_49103 DeepMRMD:0.669091;iRNA_m5C:2.89945845111106e-12 49104 chr6 1612111 1612111 1 + G T rs543505807 1612109 + 1612089 1612129 41 TCACCTCGTGGTACCTGAACCAGGCGGGCGGAGACCTGGGC TCACCTCGTGGTACCTGAACCATGCGGGCGGAGACCTGGGC < 41bp 0.82631577414916 0.520575580411464 0.8082504 0.31892484 prediction 0.611480387475392 Functional Loss - FOXC1 ENSG00000054598 CDS Human protein_coding chr6:1612109 chr6:1612111 nonsynonymous SNV 0.973 0 23 hm5C_associated_SNPs_53752 0 0 1 0 0 Cytosol 0.500231643921096 0.500231643447811 0.6165008 9.46569489457261e-10 hm5C_site_49104 DeepMRMD:0.6165008;iRNA_m5C:9.46569489457261e-10 49105 chr17 73481600 73481600 1 + G T UCEC 73481598 + 73481578 73481618 41 GCAGTGCTGGAAGGACATCTCAGGGAGCGGAAGAAGTGTCT GCAGTGCTGGAAGGACATCTCATGGAGCGGAAGAAGTGTCT < 41bp 0.842144655176122 0.536434592968391 0.8866264 0.6079561 prediction 0.611420124415463 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73481598 chr17:73481600 nonsynonymous SNV 0.124 1 23 hm5C_associated_SNPs_53753 0 0 1 0 2 Cytosol 0.500231643972857 0.500231643921066 0.5573406 1.03581365706873e-10 hm5C_site_49105 DeepMRMD:0.5573406;iRNA_m5C:1.03581365706873e-10 49106 chr8 145065567 145065567 1 + A C KIRP 145065563 + 145065543 145065583 41 CCTACGGTCAGCCAGGGTACCCCCATGGCCCCAGCCCCTAC CCTACGGTCAGCCAGGGTACCCCCCTGGCCCCAGCCCCTAC < 41bp 0.805708389502982 0.407366464647655 0.92201066 0.061195016 prediction 0.611416779005963 Functional Loss - GRINA ENSG00000178719 CDS Human protein_coding chr8:145065563 chr8:145065567 nonsynonymous SNV 0.946 0 25 hm5C_associated_SNPs_53754 0 0 1 0 0 Endoplasmic reticulum 0.500231643921197 0.500231643918962 0.84402132 4.46864767411626e-12 hm5C_site_49106 DeepMRMD:0.84402132;iRNA_m5C:4.46864767411626e-12 49107 chr1 249212544 249212544 1 + G T GBM 249212541 + 249212521 249212561 41 GGTGTCCATGCCAAATGCTTCAGGGAGTACCACATCCGGTG GGTGTCCATGCCAAATGCTTCAGTGAGTACCACATCCGGTG < 41bp 0.805708125844658 0.438652315036717 0.8927868 0.24560693 prediction 0.611416251689316 Functional Loss - PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249212541 chr1:249212544 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_53755 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.7855736 4.44089209850063e-16 hm5C_site_49107 DeepMRMD:0.7855736;iRNA_m5C:4.44089209850063e-16 49108 chr6 89862895 89862895 1 + A T HNSC 89862891 + 89862871 89862911 41 AGACAGCAAATGAAACCAACCTGGAGAGTTCATGGTATGAA AGACAGCAAATGAAACCAACCTGGTGAGTTCATGGTATGAA < 41bp 0.806672525358026 0.500965297575695 0.06663275 0.08016348 prediction 0.611414455564661 Functional Loss - PM20D2 ENSG00000146281 CDS Human protein_coding chr6:89862891 chr6:89862895 stopgain 1.000 1 25 hm5C_associated_SNPs_53756 0 0 1 0 1 Ribosome 0.500231717828323 0.500231652317069 0 1.31022508176315e-07 hm5C_site_49108 DeepMRMD:0;iRNA_m5C:1.31022508176315e-07 49109 chr2 37035781 37035781 1 + G T PAAD 37035779 + 37035759 37035799 41 GGCTTCGTCATCGACGGCTCCAGCAGTGTGGGGACGGGCAA GGCTTCGTCATCGACGGCTCCATCAGTGTGGGGACGGGCAA < 41bp 0.805697339510367 0.489340069134446 0.30376673 0.119360924 prediction 0.611394679020733 Functional Loss - VIT ENSG00000205221 CDS Human protein_coding chr2:37035779 chr2:37035781 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_53757 0 0 0 0 0 Nucleus 0.500231643921108 0.500667098016352 0 0 hm5C_site_49109 DeepMRMD:0;iRNA_m5C:0 49110 chr2 131100699 131100699 1 + G T HNSC 131100697 + 131100677 131100717 41 CTGCGCCGCGAGTACCTGTACCGCAAGGCCCGGGAGGAGGC CTGCGCCGCGAGTACCTGTACCTCAAGGCCCGGGAGGAGGC < 41bp 0.829808645464646 0.52411465369388 0.05151871 0.020799369 prediction 0.611387983541532 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131100697 chr2:131100699 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53758 0 0 1 0 2 Ribosome 0.500231643910419 0.500231643921098 0 0 hm5C_site_49110 DeepMRMD:0;iRNA_m5C:0 49111 chr7 6193625 6193625 1 + G T UCEC 6193623 + 6193603 6193643 41 CGAGGACATCGTGGGGGACACAGCACCCCCTGACCTGTGTG CGAGGACATCGTGGGGGACACATCACCCCCTGACCTGTGTG < 41bp 0.80568840547234 0.480462564827244 0.757509 0.37026376 prediction 0.61137681094468 Functional Loss - USP42 ENSG00000106346 CDS Human protein_coding chr7:6193623 chr7:6193625 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_53759 0 0 0 0 0 Ribosome 0.500231644186979 0.500231721008125 0.515018 0 hm5C_site_49111 DeepMRMD:0.515018;iRNA_m5C:0 49112 chrX 23410834 23410834 1 + G T UCEC 23410832 + 23410812 23410852 41 TTCACGAACATTGAGGCAGCCAGGATTTTCTGCTGCAATTC TTCACGAACATTGAGGCAGCCATGATTTTCTGCTGCAATTC < 41bp 0.827516770287663 0.521843174427301 0.68254447 0.20628771 prediction 0.611347191720725 Functional Loss - PTCHD1 ENSG00000165186 CDS Human protein_coding chrX:23410832 chrX:23410834 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53760 0 0 0 0 0 exosome 0.500231643869545 0.500231643921439 0.36508894 0 hm5C_site_49112 DeepMRMD:0.36508894;iRNA_m5C:0 49113 chr11 88911839 88911839 1 + G T LUAD 88911836 + 88911816 88911856 41 CTATTCCATATTGGGACTGGCGGGATGCAGAAAAGTGTGAC CTATTCCATATTGGGACTGGCGGTATGCAGAAAAGTGTGAC < 41bp 0.805671292309775 0.45347616647024 0.76657134 0.18591848 prediction 0.611342584619549 Functional Loss - TYR ENSG00000077498 CDS Human protein_coding chr11:88911836 chr11:88911839 nonsynonymous SNV 0.993 5 24 hm5C_associated_SNPs_53761 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.53314268 0 hm5C_site_49113 DeepMRMD:0.53314268;iRNA_m5C:0 49114 chr11 88911838 88911838 1 + G T UCEC 88911836 + 88911816 88911856 41 CTATTCCATATTGGGACTGGCGGGATGCAGAAAAGTGTGAC CTATTCCATATTGGGACTGGCGTGATGCAGAAAAGTGTGAC < 41bp 0.805671292309775 0.49586197167474 0.76657134 0.18046051 prediction 0.611342584619549 Functional Loss - TYR ENSG00000077498 CDS Human protein_coding chr11:88911836 chr11:88911838 synonymous SNV . 0 23 hm5C_associated_SNPs_53762 0 0 0 0 0 unknown 0.500231643921092 0.50023164392028 0.53314268 1.62492241884138e-12 hm5C_site_49114 DeepMRMD:0.53314268;iRNA_m5C:1.62492241884138e-12 49115 chr16 67208964 67208964 1 + G T SARC 67208962 + 67208942 67208982 41 ATCTCTAGATTCCTGAAGGCCAGAGCTCTGACAGGCGGTGC ATCTCTAGATTCCTGAAGGCCATAGCTCTGACAGGCGGTGC < 41bp 0.805658899912408 0.495551961810567 0.33715048 0.16546977 prediction 0.611317799824816 Functional Loss - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208962 chr16:67208964 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_53763 0 0 1 0 1 Ribosome 0.500231663986894 0.500231643873957 0 4.02258739651273e-08 hm5C_site_49115 DeepMRMD:0;iRNA_m5C:4.02258739651273e-08 49116 chr2 102851498 102851498 1 + G T LUAD 102851496 + 102851476 102851516 41 TACAGTGCCCTGATCCAGGACGGGATGAAGGTTATTCTCAT TACAGTGCCCTGATCCAGGACGTGATGAAGGTTATTCTCAT < 41bp 0.80565706691914 0.489523066644894 0.87500226 0.20954174 prediction 0.611314133838279 Functional Loss - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102851496 chr2:102851498 nonsynonymous SNV 0.981 4 23 hm5C_associated_SNPs_53764 0 0 0 0 0 exosome 0.500231656697394 0.500231643915581 0.75000452 2.5563624328484e-08 hm5C_site_49116 DeepMRMD:0.75000452;iRNA_m5C:2.5563624328484e-08 49117 chr7 12620741 12620741 1 + G T UCEC 12620738 + 12620718 12620758 41 CTTACGAACGACCTGACAGCCAAGAGGCTCCTACATGTGAA CTTACGAACGACCTGACAGCCAATAGGCTCCTACATGTGAA < 41bp 0.878022158347588 0.572369076635111 0.6630566 0.09271014 prediction 0.611306163424953 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12620738 chr7:12620741 nonsynonymous SNV 0.613 1 24 hm5C_associated_SNPs_53765 0 0 0 0 1 nucleolus 0.500231643921094 0.500231643921091 0.3261132 5.32907051820075e-15 hm5C_site_49117 DeepMRMD:0.3261132;iRNA_m5C:5.32907051820075e-15 49118 chr11 65298136 65298136 1 + G T UCEC 65298133 + 65298113 65298153 41 CCGAGAAGCAAAAATTCTTCCAGGAGCTGAGCAAGAGCCTG CCGAGAAGCAAAAATTCTTCCAGTAGCTGAGCAAGAGCCTG < 41bp 0.880048705425858 0.574396350626182 0.8781344 0.39817148 prediction 0.611304709599352 Functional Loss - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65298133 chr11:65298136 stopgain 1.000 1 24 hm5C_associated_SNPs_53766 0 0 0 0 0 Ribosome 0.500231658860368 0.500231658200583 0.7562688 1.31956978677295e-09 hm5C_site_49118 DeepMRMD:0.7562688;iRNA_m5C:1.31956978677295e-09 49119 chr16 27078618 27078618 1 + G T LUAD 27078616 + 27078596 27078636 41 GACAAGGAGGGCAGCGACATCAGCTTGGTGGGCAGCCACCG GACAAGGAGGGCAGCGACATCATCTTGGTGGGCAGCCACCG < 41bp 0.807664480317171 0.502019033130211 0.5557574 0.21433899 prediction 0.611290894373921 Functional Loss - C16orf82 ENSG00000234186 ncRNA_exonic Human protein_coding chr16:27078616 chr16:27078618 . . 0 23 hm5C_associated_SNPs_53767 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.1115148 0 hm5C_site_49119 DeepMRMD:0.1115148;iRNA_m5C:0 49120 chr1 19582447 19582447 1 + G T LUAD 19582445 + 19582425 19582465 41 CGTGAATTGTCCCACAGCTTCGGAAATGTGTGGACACCTAC CGTGAATTGTCCCACAGCTTCGTAAATGTGTGGACACCTAC < 41bp 0.805643623345605 0.4929869108866 0.4590749 0.19605312 prediction 0.61128724669121 Functional Loss - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19582445 chr1:19582447 synonymous SNV . 0 23 hm5C_associated_SNPs_53768 0 0 1 0 2 Ribosome 0.500231643921092 0.50023167282438 0 0 hm5C_site_49120 DeepMRMD:0;iRNA_m5C:0 49121 chr8 146278072 146278072 1 + G T LUAD 146278070 + 146278050 146278090 41 CCCGGCCCAGTTTCCAGCGCCCGGAATCCTTCCACTGTCTG CCCGGCCCAGTTTCCAGCGCCCTGAATCCTTCCACTGTCTG < 41bp 0.805640905308019 0.483215262679043 0.78158414 0.23878023 prediction 0.611281810616037 Functional Loss - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278070 chr8:146278072 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_53769 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921093 0.56316828 0 hm5C_site_49121 DeepMRMD:0.56316828;iRNA_m5C:0 49122 chr1 156554699 156554699 1 + G T STAD 156554697 + 156554677 156554717 41 TCCGGGAAGACTCCAGGCTCCAGGTGGGGCCAGCCAGGCGG TCCGGGAAGACTCCAGGCTCCATGTGGGGCCAGCCAGGCGG < 41bp 0.843013797599348 0.537374299258296 0.8058679 0.43083903 prediction 0.611278996682103 Functional Loss - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156554697 chr1:156554699 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_53770 0 0 0 0 2 exosome 0.500231643921092 0.500231643921087 0.6117358 1.17683640610267e-14 hm5C_site_49122 DeepMRMD:0.6117358;iRNA_m5C:1.17683640610267e-14 49123 chr14 21360123 21360123 1 + G T OV 21360121 + 21360101 21360141 41 AGTATACGCTGCCCTCATAACAGAACTCTCAACAATTGTCA AGTATACGCTGCCCTCATAACATAACTCTCAACAATTGTCA < 41bp 0.815252117320038 0.509618942283916 0.4113307 0.15638256 prediction 0.611266350072244 Functional Loss - RNASE3 ENSG00000169397 CDS Human protein_coding chr14:21360121 chr14:21360123 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_53771 0 0 0 0 0 exosome 0.500231643925975 0.500231643922793 0 6.36402042175632e-12 hm5C_site_49123 DeepMRMD:0;iRNA_m5C:6.36402042175632e-12 49124 chr20 333868 333868 1 + G T THCA 333865 + 333845 333885 41 TCTCCCTAGATCAGCCTGTCCTCGGGGACCCTGCTTCTGCT TCTCCCTAGATCAGCCTGTCCTCTGGGACCCTGCTTCTGCT < 41bp 0.805630694623944 0.428238883252835 0.15561107 0.09245649 prediction 0.611261389247887 Functional Loss - NRSN2 ENSG00000125841 CDS Human protein_coding chr20:333865 chr20:333868 synonymous SNV . 0 24 hm5C_associated_SNPs_53772 0 0 1 0 1 cytosol 0.500231643921092 0.500231630990278 0 2.58616288384417e-08 hm5C_site_49124 DeepMRMD:0;iRNA_m5C:2.58616288384417e-08 49125 chr5 434249 434249 1 + G T UCEC 434247 + 434227 434267 41 AGTGCCTACTCCAGCCGGACCAGCAGACCCATGCGGGATGT AGTGCCTACTCCAGCCGGACCATCAGACCCATGCGGGATGT < 41bp 0.813986887103176 0.508359117881039 0.79285395 0.50092584 prediction 0.611255538444274 Functional Loss - AHRR ENSG00000063438 CDS Human protein_coding chr5:434247 chr5:434249 nonsynonymous SNV 0.016 0 23 hm5C_associated_SNPs_53773 0 0 0 0 0 chromatin 0.500231643921091 0.500231643921093 0.58385622 0 hm5C_site_49125 DeepMRMD:0.58385622;iRNA_m5C:0 49126 chr14 101489757 101489757 1 + G T UCEC 101489754 + 101489734 101489774 41 CTCAGTATCAAATCCATCCCCGAGGCTCCTGGAAACAACGC CTCAGTATCAAATCCATCCCCGATGCTCCTGGAAACAACGC < 41bp 0.805624533386612 0.484773462336818 0.25472927 0.09141749 prediction 0.611249066773223 Functional Loss - MIR411 ENSG00000199109 ncRNA_exonic Human miRNA chr14:101489754 chr14:101489757 . . 0 24 hm5C_associated_SNPs_53774 0 0 0 0 0 unknown 0.500231643909608 0.500231646168358 0 0 hm5C_site_49126 DeepMRMD:0;iRNA_m5C:0 49127 chr14 96706825 96706825 1 + G T STAD 96706822 + 96706802 96706842 41 AATGCCCCCAAGTGGAGTGGCTGGGCTGGCTCAACACCATC AATGCCCCCAAGTGGAGTGGCTGTGCTGGCTCAACACCATC < 41bp 0.805621904316488 0.442653006400494 0.26049456 0.026683748 prediction 0.611243808632975 Functional Loss - BDKRB2 ENSG00000168398 CDS Human protein_coding chr14:96706822 chr14:96706825 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_53775 0 0 0 0 1 exosome 0.500231643940427 0.500231643921092 0 3.86688459030893e-11 hm5C_site_49127 DeepMRMD:0;iRNA_m5C:3.86688459030893e-11 49128 chr1 248402638 248402638 1 + G T GBM 248402635 + 248402615 248402655 41 CCTCTTCAGTACACCATCCTCATGAATCCGAAACTCTGTGT CCTCTTCAGTACACCATCCTCATTAATCCGAAACTCTGTGT < 41bp 0.875234094371939 0.56962009061323 0.37188238 0.17239103 prediction 0.611228007517418 Functional Loss - OR2M4 ENSG00000171180 CDS Human protein_coding chr1:248402635 chr1:248402638 nonsynonymous SNV 0.020 1 24 hm5C_associated_SNPs_53776 0 0 0 0 0 exosome 0.500221960935759 0.500231634943262 0 0 hm5C_site_49128 DeepMRMD:0;iRNA_m5C:0 49129 chr5 68715411 68715411 1 + G T SKCM 68715409 + 68715389 68715429 41 AGACTTCTACTCAAGTGACACAGAAGAACCAGCTATAGCGC AGACTTCTACTCAAGTGACACATAAGAACCAGCTATAGCGC < 41bp 0.805611348835753 0.496582312433596 0.049883813 0.006327778 prediction 0.611222697671505 Functional Loss - MARVELD2 ENSG00000152939 CDS Human protein_coding chr5:68715409 chr5:68715411 stopgain 0.938 0 23 hm5C_associated_SNPs_53777 0 0 1 0 0 Nucleus 0.500231483927191 0.501266657690053 0 0 hm5C_site_49129 DeepMRMD:0;iRNA_m5C:0 49130 chr17 26574890 26574890 1 + G T COAD 26574887 + 26574867 26574907 41 TGAAACCGGTGGGCTGGCACCTGGGCACAGTGCTTCCAGGT TGAAACCGGTGGGCTGGCACCTGTGCACAGTGCTTCCAGGT < 41bp 0.853547259225162 0.547938073462386 0.5145514 0.15163013 prediction 0.611218371525552 Functional Loss - PPY2P ENSG00000265060;ENSG00000266830 ncRNA_exonic Human other chr17:26574887 chr17:26574890 . . 0 24 hm5C_associated_SNPs_53778 0 0 0 0 1 unknown 0.500231643887536 0.500249130997145 0.0291028 0 hm5C_site_49130 DeepMRMD:0.0291028;iRNA_m5C:0 49131 chr1 26751871 26751871 1 + G T LGG 26751868 + 26751848 26751888 41 TTCACCTTTAAGAAGTCAGCCAAGGGTCTGGAATCCATCCG TTCACCTTTAAGAAGTCAGCCAATGGTCTGGAATCCATCCG < 41bp 0.805597258340393 0.430441544021722 0.32533547 0.11094552 prediction 0.611194516680786 Functional Loss - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26751868 chr1:26751871 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_53779 0 0 0 0 0 Nucleus 0.500231643921104 0.500231642598396 0 2.64541677452712e-09 hm5C_site_49131 DeepMRMD:0;iRNA_m5C:2.64541677452712e-09 49132 chr5 140554036 140554036 1 + G T BLCA 140554033 + 140554013 140554053 41 GCCACAGACCGCGGCTCCCCCGCGCTGAGCAGCGAGGCGCT GCCACAGACCGCGGCTCCCCCGCTCTGAGCAGCGAGGCGCT < 41bp 0.883405156580094 0.57783253239762 0.56133306 0.32131743 prediction 0.611145248364948 Functional Loss - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140554033 chr5:140554036 synonymous SNV . 0 24 hm5C_associated_SNPs_53780 0 0 0 0 0 exosome 0.500231643829714 0.500231644874262 0.12266612 0 hm5C_site_49132 DeepMRMD:0.12266612;iRNA_m5C:0 49133 chr16 88773618 88773618 1 + G T BRCA 88773616 + 88773596 88773636 41 CGAGCCGGAGATGCCTTCTGCAGGTGAGGCCTGGAGGTGGC CGAGCCGGAGATGCCTTCTGCATGTGAGGCCTGGAGGTGGC < 41bp 0.805557406852663 0.4773047614061 0.8793942 0.53884387 prediction 0.611114813705325 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88773616 chr16:88773618 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53781 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643876827 0.68110066 8.85302942066346e-11 hm5C_site_49133 DeepMRMD:0.68110066;iRNA_m5C:8.85302942066346e-11 49134 chr15 78454661 78454661 1 + G T LUSC 78454659 + 78454639 78454679 41 GAGTTTGCCTTTGAGTATGCCCGGAACAACCACCGGAGCAA GAGTTTGCCTTTGAGTATGCCCTGAACAACCACCGGAGCAA < 41bp 0.805553591739396 0.489473843143307 0.41998097 0.060964644 prediction 0.611107183478792 Functional Loss - IDH3A ENSG00000166411 CDS Human protein_coding chr15:78454659 chr15:78454661 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_53782 0 0 1 0 2 Cytosol 0.50023164147214 0.500231643811537 0 0 hm5C_site_49134 DeepMRMD:0;iRNA_m5C:0 49135 chr10 71008464 71008464 1 + G T LUSC 71008462 + 71008442 71008482 41 AGGATGCTGCCCACCTACGTCTGCGGGCTGCCGGACGGCAC AGGATGCTGCCCACCTACGTCTTCGGGCTGCCGGACGGCAC < 41bp 0.837841949888597 0.532292526484837 0.40768903 0.31603792 prediction 0.611098846807521 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71008462 chr10:71008464 nonsynonymous SNV 0.085 2 23 hm5C_associated_SNPs_53783 0 0 0 0 1 Cytosol 0.500231656568305 0.500231643921934 0 2.52927432331518e-08 hm5C_site_49135 DeepMRMD:0;iRNA_m5C:2.52927432331518e-08 49136 chr19 40009409 40009409 1 + G T LUAD 40009407 + 40009387 40009427 41 TACTGAAAAAGAGCCTGGAGCAGCAATTTCCGAATCACCTA TACTGAAAAAGAGCCTGGAGCATCAATTTCCGAATCACCTA < 41bp 0.805546227595218 0.487918660160004 0.07294947 0.10117823 prediction 0.611092455190435 Functional Loss - SELENOV ENSG00000186838 CDS Human protein_coding chr19:40009407 chr19:40009409 nonsynonymous SNV 0.414 0 23 hm5C_associated_SNPs_53784 0 0 0 0 2 unknown 0.500231643921092 0.50023164391873 0 4.72422101438497e-12 hm5C_site_49136 DeepMRMD:0;iRNA_m5C:4.72422101438497e-12 49137 chr5 55110737 55110737 1 + A C BLCA 55110733 + 55110713 55110753 41 TTTCTTTTCTTTCAAGTGATCGGGAACAGAGAGAGCGGGAG TTTCTTTTCTTTCAAGTGATCGGGCACAGAGAGAGCGGGAG < 41bp 0.805538410053037 0.447430369519177 0.68469936 0.49242908 prediction 0.611076820106073 Functional Loss - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55110733 chr5:55110737 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_53785 0 0 0 0 1 unknown 0.500231643921901 0.500231643930071 0.36939872 0 hm5C_site_49137 DeepMRMD:0.36939872;iRNA_m5C:0 49138 chr3 37038200 37038200 1 + G T STAD 37038197 + 37038177 37038217 41 CAAGACAATGGCACCGGGATCAGGGTAAGTAAAACCTCAAA CAAGACAATGGCACCGGGATCAGTGTAAGTAAAACCTCAAA < 41bp 0.819360588901587 0.513829811112792 0.903372 0.47908896 prediction 0.611061555577588 Functional Loss - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37038197 chr3:37038200 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_53786 0 0 1 0 3 Cytosol 0.500231643919381 0.500231643923028 0.806744 0 hm5C_site_49138 DeepMRMD:0.806744;iRNA_m5C:0 49139 chr12 72091248 72091248 1 + G T UCEC 72091246 + 72091226 72091266 41 TGCTGGAGACACATGGGCTTCAGAAGTTGGCCCAGTTCTGA TGCTGGAGACACATGGGCTTCATAAGTTGGCCCAGTTCTGA < 41bp 0.821433243152075 0.515902571596403 0.15417343 0.016851872 prediction 0.611061343111345 Functional Loss - TMEM19 ENSG00000139291 CDS Human protein_coding chr12:72091246 chr12:72091248 stopgain 0.999 1 23 hm5C_associated_SNPs_53787 0 0 0 0 1 Endoplasmic reticulum 0.500222702891357 0.5002316445311 0 0 hm5C_site_49139 DeepMRMD:0;iRNA_m5C:0 49140 chr20 35177635 35177635 1 + A T SKCM 35177631 + 35177611 35177651 41 ACCCGCATCCTCAAACATGGCGCCAAGGATAAAGACGACTA ACCCGCATCCTCAAACATGGCGCCTAGGATAAAGACGACTA < 41bp 0.81367524928248 0.508154713819435 0.03927335 0.010227412 prediction 0.611041070926089 Functional Loss - MYL9 ENSG00000101335 CDS Human protein_coding chr20:35177631 chr20:35177635 stopgain 0.999 1 25 hm5C_associated_SNPs_53788 0 0 0 0 0 Cytosol 0.500231643921076 0.500231643921092 0 0 hm5C_site_49140 DeepMRMD:0;iRNA_m5C:0 49141 chr19 1754598 1754598 1 + A C MESO 1754594 + 1754574 1754614 41 CCCGGCGGGAGCGGCGGCGGCCCCAGCGCGGGCGCAGCGGC CCCGGCGGGAGCGGCGGCGGCCCCCGCGCGGGCGCAGCGGC < 41bp 0.805508997261803 0.458388524888248 0.89323676 0.8809594 prediction 0.611017994523607 Functional Loss - ONECUT3 ENSG00000205922 CDS Human protein_coding chr19:1754594 chr19:1754598 nonsynonymous SNV 0.411 1 25 hm5C_associated_SNPs_53789 0 0 0 0 0 exosome 0.500231643920804 0.500231634990137 0.02455472 1.78613344115064e-08 hm5C_site_49141 DeepMRMD:0.02455472;iRNA_m5C:1.78613344115064e-08 49142 chr11 2424212 2424212 1 + A C COAD 2424208 + 2424188 2424228 41 TCCTCTGTGGCCCACACCAGCATGAGTGACAACGGAGGCTT TCCTCTGTGGCCCACACCAGCATGCGTGACAACGGAGGCTT < 41bp 0.875486463884582 0.569977916809903 0.8776612 0.81618243 prediction 0.611017094149358 Functional Loss - TSSC4 ENSG00000184281 CDS Human protein_coding chr11:2424208 chr11:2424212 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_53790 0 0 1 0 0 Ribosome 0.500231642698172 0.500231643919873 0.12295754 0 hm5C_site_49142 DeepMRMD:0.12295754;iRNA_m5C:0 49143 chr17 77708995 77708995 1 + G T UCEC 77708993 + 77708973 77709013 41 CACAGTGATGGCGTGGTTCACAGAGGAGGACCTGGATCTGG CACAGTGATGGCGTGGTTCACATAGGAGGACCTGGATCTGG < 41bp 0.85072000064661 0.545214249495902 0.92122895 0.47830266 prediction 0.611011502301416 Functional Loss - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77708993 chr17:77708995 stopgain 0.008 0 23 hm5C_associated_SNPs_53791 0 0 0 0 0 exosome 0.500231212718008 0.500231643918048 0.8424579 0 hm5C_site_49143 DeepMRMD:0.8424579;iRNA_m5C:0 49144 chr2 26257601 26257601 1 + A T LUAD 26257597 + 26257577 26257617 41 TTCAATACTACCTTTATTTCCACCATAGGTAAGACCTGTGG TTCAATACTACCTTTATTTCCACCTTAGGTAAGACCTGTGG < 41bp 0.805503637077782 0.492983084762717 0.03295672 0.1367988 prediction 0.611007274155564 Functional Loss - RAB10 ENSG00000084733 CDS Human protein_coding chr2:26257597 chr2:26257601 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53792 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_49144 DeepMRMD:0;iRNA_m5C:0 49145 chr1 228345796 228345796 1 + G T LUAD 228345793 + 228345773 228345813 41 CGTCTGAGCAGGAGCGGCGCCGCGCCCTCCGCCGCCGCCCG CGTCTGAGCAGGAGCGGCGCCGCTCCCTCCGCCGCCGCCCG < 41bp 0.805503443777311 0.44810147872181 0.5688539 0.36786258 prediction 0.611006887554622 Functional Loss - GJC2 ENSG00000198835 CDS Human protein_coding chr1:228345793 chr1:228345796 nonsynonymous SNV 0.782 3 24 hm5C_associated_SNPs_53793 0 0 0 0 0 chromatin 0.500231644480446 0.500231643918767 0.1377078 1.12335851731871e-09 hm5C_site_49145 DeepMRMD:0.1377078;iRNA_m5C:1.12335851731871e-09 49146 chr17 20744465 20744465 1 + A C rs9906238 20744461 + 20744441 20744481 41 TTCCTGCCGCCGGAGGCCACCTACACCCTGGTGCCTGAGCC TTCCTGCCGCCGGAGGCCACCTACCCCCTGGTGCCTGAGCC < 41bp 0.805489027830399 0.458950121711874 0.17486677 0.20534518 prediction 0.610978055660799 Functional Loss - LOC100287072;CCDC144NL ENSG00000226981 ncRNA_exonic Human unprocessed_pseudogene chr17:20744461 chr17:20744465 . . 0 25 hm5C_associated_SNPs_53794 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_49146 DeepMRMD:0;iRNA_m5C:0 49147 chr12 53819521 53819521 1 + G T LGG 53819518 + 53819498 53819538 41 TGGTTTGGGCCGGGCAGCTGCAAGGAAAACTGGTTGCCATC TGGTTTGGGCCGGGCAGCTGCAATGAAAACTGGTTGCCATC < 41bp 0.805486163459126 0.41630374150452 0.90099525 0.36713952 prediction 0.610972326918252 Functional Loss - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819518 chr12:53819521 stopgain 0.081 0 24 hm5C_associated_SNPs_53795 0 0 1 0 2 exosome 0.500231643921247 0.500231643921871 0.8019905 0 hm5C_site_49147 DeepMRMD:0.8019905;iRNA_m5C:0 49148 chr19 10568686 10568686 1 + G T COAD 10568684 + 10568664 10568704 41 ACAGCCCATGTCCCAAATCACAGGGTTGAAAAAGTTGATGC ACAGCCCATGTCCCAAATCACATGGTTGAAAAAGTTGATGC < 41bp 0.805478215010145 0.476987746163172 0.94931513 0.77538633 prediction 0.610956430020289 Functional Loss - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10568684 chr19:10568686 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_53796 0 0 1 0 1 chromatin 0.500231643921087 0.500231643989491 0.3478576 0 hm5C_site_49148 DeepMRMD:0.3478576;iRNA_m5C:0 49149 chr2 96992579 96992579 1 + G T BLCA 96992577 + 96992557 96992597 41 AGCGAGCCGCTGAGCAGAGGCAGAAGGCAGAGAACTTCTGG AGCGAGCCGCTGAGCAGAGGCATAAGGCAGAGAACTTCTGG < 41bp 0.819507151169887 0.514031644033273 0.8944913 0.7712363 prediction 0.610951014273226 Functional Loss - ITPRIPL1 ENSG00000198885 CDS Human protein_coding chr2:96992577 chr2:96992579 nonsynonymous SNV 0.832 0 23 hm5C_associated_SNPs_53797 0 0 0 0 0 Endoplasmic reticulum 0.50023164394971 0.500231643921081 0.24651 5.72595304504375e-11 hm5C_site_49149 DeepMRMD:0.24651;iRNA_m5C:5.72595304504375e-11 49150 chr3 44943120 44943120 1 + G T STAD 44943118 + 44943098 44943138 41 CAGGCAGTGCCCCGATCCTGCAGCAGTACTACAACACGAAG CAGGCAGTGCCCCGATCCTGCATCAGTACTACAACACGAAG < 41bp 0.805465524057061 0.467360325108761 0.29865664 0.15643829 prediction 0.610931048114121 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44943118 chr3:44943120 nonsynonymous SNV 0.561 1 23 hm5C_associated_SNPs_53798 0 0 0 0 0 exosome 0.500231967720765 0.500233023624817 0 0 hm5C_site_49150 DeepMRMD:0;iRNA_m5C:0 49151 chr22 45944519 45944519 1 + G T LUAD 45944517 + 45944497 45944537 41 CGACGAGTGCGCCCTGCCCACCGGGGGCCACATCTGCTCCT CGACGAGTGCGCCCTGCCCACCTGGGGCCACATCTGCTCCT < 41bp 0.805465328650995 0.458089318951197 0.92638206 0.1008445 prediction 0.61093065730199 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45944517 chr22:45944519 nonsynonymous SNV 0.974 5 23 hm5C_associated_SNPs_53799 0 0 1 0 1 cytosol 0.500231659165558 0.500231296504547 0.85276412 7.25322021999375e-07 hm5C_site_49151 DeepMRMD:0.85276412;iRNA_m5C:7.25322021999375e-07 49152 chr2 11053169 11053169 1 + A C BLCA 11053165 + 11053145 11053185 41 TCATGTGCATGGGCACCATCCCCGAGCTGCAGGTGCTGGAC TCATGTGCATGGGCACCATCCCCGCGCTGCAGGTGCTGGAC < 41bp 0.88032638594781 0.574864616415272 0.35017893 0.20224157 prediction 0.610923539065075 Functional Loss - KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11053165 chr2:11053169 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_53800 0 0 0 0 0 exosome 0.500231657877759 0.500231693527237 0 0 hm5C_site_49152 DeepMRMD:0;iRNA_m5C:0 49153 chr1 36788238 36788238 1 + C A rs542369630 36788241 - 36788221 36788261 41 TGCCTGCTCGTCATCAGCATCTCGTGGGCGCCCCGCCCGCG TGCCTGCTCGTCATCAGCATCTCTTGGGCGCCCCGCCCGCG < 41bp 0.805460104408543 0.445965967332599 0.13107988 0.046014637 prediction 0.610920208817086 Functional Loss - EVA1B ENSG00000142694 CDS Human protein_coding chr1:36788241 chr1:36788238 synonymous SNV . 0 24 hm5C_associated_SNPs_53801 0 0 1 0 1 exosome 0.500231661045809 0.500231643922162 0 3.42472932235438e-08 hm5C_site_49153 DeepMRMD:0;iRNA_m5C:3.42472932235438e-08 49154 chr5 178287009 178287009 1 + G T rs7446382 178287006 + 178286986 178287026 41 CTCTGCGGAGCTTTCGCTGCCCGGTGAGCGGCGCCGGGCTT CTCTGCGGAGCTTTCGCTGCCCGTTGAGCGGCGCCGGGCTT < 41bp 0.805455346148947 0.455378520079154 0.65540296 0.04270014 prediction 0.610910692297894 Functional Loss - ZNF354B ENSG00000178338 UTR5 Human protein_coding chr5:178287006 chr5:178287009 . . 0 24 hm5C_associated_SNPs_53802 0 0 1 0 0 nucleoplasm 0.500231644035459 0.500231643978597 0.31080592 1.13724585304453e-10 hm5C_site_49154 DeepMRMD:0.31080592;iRNA_m5C:1.13724585304453e-10 49155 chr7 19184928 19184928 1 + G T LUAD 19184926 + 19184906 19184946 41 CGTCTCGGGGAGGCCAGGGACAGGTCTGCGACGAAGTCCAG CGTCTCGGGGAGGCCAGGGACATGTCTGCGACGAAGTCCAG < 41bp 0.805447800276477 0.473151584870026 0.6915904 0.47915643 prediction 0.610895600552953 Functional Loss - FERD3L ENSG00000146618 CDS Human protein_coding chr7:19184926 chr7:19184928 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_53803 0 0 0 0 0 unknown 0.500231684472805 0.500231643948889 0.3831808 8.10478320012464e-08 hm5C_site_49155 DeepMRMD:0.3831808;iRNA_m5C:8.10478320012464e-08 49156 chr9 139379184 139379184 1 + G T BLCA 139379181 + 139379161 139379201 41 CAGTCCGGCTGACGTGGCACCAGGGCCAATCTGCTCAGCTA CAGTCCGGCTGACGTGGCACCAGTGCCAATCTGCTCAGCTA < 41bp 0.88961429556541 0.584170370082846 0.91866255 0.32856986 prediction 0.610887850965127 Functional Loss - C9orf163 ENSG00000196366 CDS Human lincRNA chr9:139379181 chr9:139379184 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_53804 0 0 0 1 0 unknown 0.500231643921092 0.500231574720172 0.8373251 1.38401841764946e-07 hm5C_site_49156 DeepMRMD:0.8373251;iRNA_m5C:1.38401841764946e-07 49157 chrX 140984913 140984913 1 + G T STAD 140984910 + 140984890 140984930 41 AATCCTTGCCCAGGTATGCCCTGGATGAAAAGGTGGCTGAG AATCCTTGCCCAGGTATGCCCTGTATGAAAAGGTGGCTGAG < 41bp 0.885954845434157 0.580511105296511 0.9168828 0.72256505 prediction 0.610887480275293 Functional Loss - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140984910 chrX:140984913 nonsynonymous SNV 0.049 2 24 hm5C_associated_SNPs_53805 0 0 0 0 0 exosome 0.500231643921092 0.500231647687462 0.3886355 0 hm5C_site_49157 DeepMRMD:0.3886355;iRNA_m5C:0 49158 chr15 44751229 44751229 1 + G T LIHC 44751226 + 44751206 44751246 41 ATAAAAGATGAGGCTGAGAACACGGAAAGCTTCTCAGCAGT ATAAAAGATGAGGCTGAGAACACTGAAAGCTTCTCAGCAGT < 41bp 0.8054410417324 0.44555136828264 0.30740798 0.16360012 prediction 0.6108820834648 Functional Loss - CTDSPL2 ENSG00000137770 CDS Human protein_coding chr15:44751226 chr15:44751229 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53806 0 0 1 0 0 Nucleus 0.500231643721549 0.500231644373496 0 0 hm5C_site_49158 DeepMRMD:0;iRNA_m5C:0 49159 chr14 21424352 21424352 1 + G T UCEC 21424350 + 21424330 21424370 41 TATATAGTTGCATGTGACAACAGAGATCAACGACGAGACCC TATATAGTTGCATGTGACAACATAGATCAACGACGAGACCC < 41bp 0.80543322805405 0.494386848945446 0.31743664 0.04901457 prediction 0.610866456108099 Functional Loss - RNASE2 ENSG00000169385 CDS Human protein_coding chr14:21424350 chr14:21424352 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_53807 0 0 0 0 0 exosome 0.500231751593712 0.500231648043041 0 2.07101343407956e-07 hm5C_site_49159 DeepMRMD:0;iRNA_m5C:2.07101343407956e-07 49160 chr15 28900662 28900662 1 + G T LUSC 28900660 + 28900640 28900680 41 GAGTCCATGCTGAGGTGGCGCAGGGTGTGCCCGCAGGCCTC GAGTCCATGCTGAGGTGGCGCATGGTGTGCCCGCAGGCCTC < 41bp 0.846921070575749 0.541496392298519 0.8982619 0.5109803 prediction 0.610849356554461 Functional Loss - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28900660 chr15:28900662 . . 0 23 hm5C_associated_SNPs_53808 0 0 1 0 0 unknown 0.50023165625535 0.500231643920787 0.7745632 2.46691249650155e-08 hm5C_site_49160 DeepMRMD:0.7745632;iRNA_m5C:2.46691249650155e-08 49161 chr1 89846106 89846106 1 + G T UCEC 89846103 + 89846083 89846123 41 AGCAACTGGATCCCAAATTCCAGGAACAAACAAACATTTTC AGCAACTGGATCCCAAATTCCAGTAACAAACAAACATTTTC < 41bp 0.805415874786783 0.45238998299214 0.06108877 0.0738886 prediction 0.610831749573567 Functional Loss - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89846103 chr1:89846106 stopgain 0.000 0 24 hm5C_associated_SNPs_53809 0 0 0 0 1 exosome 0.500231648264512 0.500231643921166 0 8.68669225440044e-09 hm5C_site_49161 DeepMRMD:0;iRNA_m5C:8.68669225440044e-09 49162 chr20 57767064 57767064 1 + G T STAD 57767061 + 57767041 57767081 41 GCGGAGAAGCCCTGGGATGCCAAGGCCCCCGAGGGCCGGCT GCGGAGAAGCCCTGGGATGCCAATGCCCCCGAGGGCCGGCT < 41bp 0.805408696930407 0.43990705880171 0.2060912 0.06029305 prediction 0.610817393860814 Functional Loss - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57767061 chr20:57767064 nonsynonymous SNV 0.025 2 24 hm5C_associated_SNPs_53810 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_49162 DeepMRMD:0;iRNA_m5C:0 49163 chr1 110034210 110034210 1 + G T SARC 110034208 + 110034188 110034228 41 TGGCCAAGAAGCGGAAAAACCTGGCCACTTATTGCCGGCCA TGGCCAAGAAGCGGAAAAACCTTGCCACTTATTGCCGGCCA < 41bp 0.805398047378498 0.492782667353617 0.76395494 0.27928507 prediction 0.610796094756997 Functional Loss - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110034208 chr1:110034210 synonymous SNV . 0 23 hm5C_associated_SNPs_53811 0 0 0 0 0 nucleoplasm 0.500231637261401 0.500231637646101 0.52790988 0 hm5C_site_49163 DeepMRMD:0.52790988;iRNA_m5C:0 49164 chr19 36278580 36278580 1 + G T UCEC 36278578 + 36278558 36278598 41 GGCTTCTTCTCCCCAGCCCCCAGGGAGTGCCTGCCACCCTT GGCTTCTTCTCCCCAGCCCCCATGGAGTGCCTGCCACCCTT < 41bp 0.805395299985106 0.482236830264015 0.9389549 0.83445966 prediction 0.610790599970213 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278578 chr19:36278580 nonsynonymous SNV 0.682 2 23 hm5C_associated_SNPs_53812 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921078 0.20899048 2.88657986402541e-14 hm5C_site_49164 DeepMRMD:0.20899048;iRNA_m5C:2.88657986402541e-14 49165 chr5 94001657 94001657 1 + G T UCEC 94001654 + 94001634 94001674 41 TTGGAAGTCTCCAGCCATGTCGAGATATTATTTAGAGTTGT TTGGAAGTCTCCAGCCATGTCGATATATTATTTAGAGTTGT < 41bp 0.805388115007475 0.452513232815401 0.60340035 0.08646172 prediction 0.61077623001495 Functional Loss - SLF1 ENSG00000133302 CDS Human protein_coding chr5:94001654 chr5:94001657 nonsynonymous SNV 0.829 1 24 hm5C_associated_SNPs_53813 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643921092 0.2068007 0 hm5C_site_49165 DeepMRMD:0.2068007;iRNA_m5C:0 49166 chr1 247587858 247587858 1 + G T LUSC 247587856 + 247587836 247587876 41 ATCCTCGGCATGTGGAGATCCTGGGTTTCTCCGAGGCCAAA ATCCTCGGCATGTGGAGATCCTTGGTTTCTCCGAGGCCAAA < 41bp 0.846048117209499 0.540667511137234 0.75753593 0.19156474 prediction 0.610761212144531 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247587856 chr1:247587858 synonymous SNV . 0 23 hm5C_associated_SNPs_53814 0 0 0 0 0 Nucleus 0.500231643887254 0.500231643740774 0.51507186 2.92961432890593e-10 hm5C_site_49166 DeepMRMD:0.51507186;iRNA_m5C:2.92961432890593e-10 49167 chr15 44048938 44048938 1 + G T BLCA 44048935 + 44048915 44048955 41 ATTTAGAGATGGTGAAGAAGCAGGTGCTTATGATGGACCTA ATTTAGAGATGGTGAAGAAGCAGTTGCTTATGATGGACCTA < 41bp 0.80536424616128 0.428567558434894 0.81589603 0.17976803 prediction 0.610728492322561 Functional Loss - PDIA3 ENSG00000167004 CDS Human protein_coding chr15:44048935 chr15:44048938 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53815 0 0 1 0 2 Endoplasmic reticulum 0.500216599613821 0.50023164392125 0.63179206 0 hm5C_site_49167 DeepMRMD:0.63179206;iRNA_m5C:0 49168 chr17 38345218 38345218 1 + G T OV 38345215 + 38345195 38345235 41 TGCAGACCCGGGTGGCCTTCCGGGGCTCTGATGAGAGTGAG TGCAGACCCGGGTGGCCTTCCGGTGCTCTGATGAGAGTGAG < 41bp 0.887856681416688 0.582501294343534 0.8926908 0.39883488 prediction 0.610710774146308 Functional Loss - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38345215 chr17:38345218 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53816 0 0 0 0 0 chromatin 0.500231702543105 0.500231643935186 0.7853816 1.17215839257057e-07 hm5C_site_49168 DeepMRMD:0.7853816;iRNA_m5C:1.17215839257057e-07 49169 chr9 101767249 101767249 1 + G T BRCA 101767247 + 101767227 101767267 41 CGAGGCACTCGCCAGCATGCCTGGGGAAGTGGAGGCCAGTG CGAGGCACTCGCCAGCATGCCTTGGGAAGTGGAGGCCAGTG < 41bp 0.842467807329175 0.537112823810555 0.53111166 0.051158577 prediction 0.61070996703724 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101767247 chr9:101767249 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_53817 0 0 0 0 1 Endoplasmic reticulum 0.500231643921105 0.500231643921089 0.06222332 3.06421554796543e-14 hm5C_site_49169 DeepMRMD:0.06222332;iRNA_m5C:3.06421554796543e-14 49170 chr3 9488989 9488989 1 + G T LGG 9488987 + 9488967 9489007 41 TACCCGGAGGTCTTCCCAAGCAGGGGTAAGAGTTGAAAAGA TACCCGGAGGTCTTCCCAAGCATGGGTAAGAGTTGAAAAGA < 41bp 0.805352163863105 0.483456584382345 0.93956536 0.5742194 prediction 0.61070432772621 Functional Loss - SETD5 ENSG00000168137 CDS Human protein_coding chr3:9488987 chr3:9488989 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_53818 0 0 1 0 1 Nucleus 0.5002316439201 0.500231643922453 0.73069192 0 hm5C_site_49170 DeepMRMD:0.73069192;iRNA_m5C:0 49171 chr16 56928501 56928501 1 + G T LUAD 56928498 + 56928478 56928518 41 AAGAGGAGGTGGAGCAAATGCAAGATCCGTGTGTTCGTAGG AAGAGGAGGTGGAGCAAATGCAATATCCGTGTGTTCGTAGG < 41bp 0.880016543342223 0.574673256050405 0.857828 0.3380562 prediction 0.610686574583636 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56928498 chr16:56928501 nonsynonymous SNV 0.982 3 24 hm5C_associated_SNPs_53819 0 0 0 0 2 nucleus 0.500231643921084 0.500231643915311 0.715656 1.15465415007066e-11 hm5C_site_49171 DeepMRMD:0.715656;iRNA_m5C:1.15465415007066e-11 49172 chr6 112671031 112671031 1 + G T COAD 112671028 + 112671008 112671048 41 ATTGCATCCAGAGGTATATACTAGAAAACCATGATTTTAGA ATTGCATCCAGAGGTATATACTATAAAACCATGATTTTAGA < 41bp 0.869756650017115 0.564424838240543 0.56629974 0.8100043 prediction 0.610663623553145 Functional Loss - RFPL4B ENSG00000251258 CDS Human protein_coding chr6:112671028 chr6:112671031 stopgain 0.006 0 24 hm5C_associated_SNPs_53820 0 0 0 0 0 unknown 0.500231644233772 0.500231644248821 0 0 hm5C_site_49172 DeepMRMD:0;iRNA_m5C:0 49173 chr7 154862784 154862784 1 + C A OV 154862786 - 154862766 154862806 41 AGGATGGTCGCCAGCACCAGCAGGTTCCAGGCGAACGTCGC AGGATGGTCGCCAGCACCAGCATGTTCCAGGCGAACGTCGC < 41bp 0.805323463952182 0.475603657267234 0.901662 0.29225048 prediction 0.610646927904365 Functional Loss - HTR5A ENSG00000157219;ENSG00000220575 CDS Human other chr7:154862786 chr7:154862784 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_53821 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.803324 0 hm5C_site_49173 DeepMRMD:0.803324;iRNA_m5C:0 49174 chr19 16860173 16860173 1 + G T UCEC 16860170 + 16860150 16860190 41 GACATGCACCCAGGGGTCCTCAAGACCCACCGCCTGCCGTG GACATGCACCCAGGGGTCCTCAATACCCACCGCCTGCCGTG < 41bp 0.80532324301685 0.427382195206886 0.530972 0.12931356 prediction 0.610646486033699 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16860170 chr19:16860173 nonsynonymous SNV 0.011 2 24 hm5C_associated_SNPs_53822 0 0 0 0 0 exosome 0.500231643921062 0.500231643921092 0.061944 0 hm5C_site_49174 DeepMRMD:0.061944;iRNA_m5C:0 49175 chr1 153747920 153747920 1 + G T UCEC 153747918 + 153747898 153747938 41 AGGTTTTCGGAAGGGAGGATCAGGGATGTTTGCGAGCGGCT AGGTTTTCGGAAGGGAGGATCATGGATGTTTGCGAGCGGCT < 41bp 0.8341211154743 0.528811264595374 0.9161725 0.45553988 prediction 0.610619701757853 Functional Loss - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153747918 chr1:153747920 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_53823 0 0 0 1 0 nucleoplasm 0.500231643921092 0.500231643939898 0.832345 0 hm5C_site_49175 DeepMRMD:0.832345;iRNA_m5C:0 49176 chr19 40521147 40521147 1 + G T COAD 40521145 + 40521125 40521165 41 ACTCATCTCACGCAACATCACAGAATTCATACTGGTGAGAA ACTCATCTCACGCAACATCACATAATTCATACTGGTGAGAA < 41bp 0.805299955315043 0.488978647995485 0.07637268 0.029826969 prediction 0.610599910630086 Functional Loss - ZNF546 ENSG00000187187 CDS Human protein_coding chr19:40521145 chr19:40521147 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_53824 0 0 0 0 0 nucleolus 0.500231643920618 0.500231643946703 0 0 hm5C_site_49176 DeepMRMD:0;iRNA_m5C:0 49177 chr19 3730650 3730650 1 + G T LGG 3730647 + 3730627 3730667 41 GCTTTAAGCGGCTGCCACGGCAGGACGTGCAGATGAAGCCT GCTTTAAGCGGCTGCCACGGCAGTACGTGCAGATGAAGCCT < 41bp 0.887516973370576 0.582222729351693 0.4115132 0.16753504 prediction 0.610588488037766 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3730647 chr19:3730650 nonsynonymous SNV 0.197 3 24 hm5C_associated_SNPs_53825 0 0 0 0 1 Ribosome 0.500231643887309 0.500231643589979 0 5.94658544628146e-10 hm5C_site_49177 DeepMRMD:0;iRNA_m5C:5.94658544628146e-10 49178 chr9 138395820 138395820 1 + G T LUAD 138395818 + 138395798 138395838 41 CCGGCAATGACGACTCTCCGCTGGCTGTGCACCTCTACTGC CCGGCAATGACGACTCTCCGCTTGCTGTGCACCTCTACTGC < 41bp 0.805281435434533 0.481434835434185 0.062479883 0.024172366 prediction 0.610562870869067 Functional Loss - MRPS2 ENSG00000122140 CDS Human protein_coding chr9:138395818 chr9:138395820 synonymous SNV . 0 23 hm5C_associated_SNPs_53826 0 0 1 0 0 Cytosol 0.500231643906916 0.5002316439211 0 0 hm5C_site_49178 DeepMRMD:0;iRNA_m5C:0 49179 chr9 138395821 138395821 1 + G T LUAD 138395818 + 138395798 138395838 41 CCGGCAATGACGACTCTCCGCTGGCTGTGCACCTCTACTGC CCGGCAATGACGACTCTCCGCTGTCTGTGCACCTCTACTGC < 41bp 0.805281435434533 0.418418639658978 0.062479883 0.035828263 prediction 0.610562870869067 Functional Loss - MRPS2 ENSG00000122140 CDS Human protein_coding chr9:138395818 chr9:138395821 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_53827 0 0 1 0 0 Cytosol 0.500231643906916 0.500231643968099 0 0 hm5C_site_49179 DeepMRMD:0;iRNA_m5C:0 49180 chr1 44595120 44595120 1 + G T PAAD 44595118 + 44595098 44595138 41 ACCAAGGCCTACCAAGCATTCAGCACTTTCCTCACAGCGCA ACCAAGGCCTACCAAGCATTCATCACTTTCCTCACAGCGCA < 41bp 0.843729438361429 0.538448290585919 0.17747718 0.1142858 prediction 0.61056229555102 Functional Loss - KLF17 ENSG00000171872 CDS Human protein_coding chr1:44595118 chr1:44595120 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_53828 0 0 0 0 1 exosome 0.500231812725146 0.500207799621086 0 4.80262081195004e-05 hm5C_site_49180 DeepMRMD:0;iRNA_m5C:4.80262081195004e-05 49181 chr16 722297 722297 1 + G T SARC 722295 + 722275 722315 41 ACCAGGAGAAGGGACAGACGCAGCGGAGCGTCCTCCTGTGC ACCAGGAGAAGGGACAGACGCATCGGAGCGTCCTCCTGTGC < 41bp 0.84017998648599 0.534901738006634 0.834023 0.1404697 prediction 0.610556496958713 Functional Loss - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722295 chr16:722297 nonsynonymous SNV 0.491 1 23 hm5C_associated_SNPs_53829 0 0 1 0 2 Ribosome 0.500231643482714 0.50023164360548 0.668046 0 hm5C_site_49181 DeepMRMD:0.668046;iRNA_m5C:0 49182 chr21 41151188 41151188 1 + G T LUSC 41151186 + 41151166 41151206 41 TGCCGCCGTCGTTGTTGTGGCTGCAACTGCTGCTGCCGTTG TGCCGCCGTCGTTGTTGTGGCTTCAACTGCTGCTGCCGTTG < 41bp 0.805254824914274 0.486166220692843 0.17514637 0.100988805 prediction 0.610509649828548 Functional Loss - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41151186 chr21:41151188 nonsynonymous SNV 0.012 0 23 hm5C_associated_SNPs_53830 0 0 0 0 1 exosome 0.500231643921268 0.500231643919153 0 4.23017176842677e-12 hm5C_site_49182 DeepMRMD:0;iRNA_m5C:4.23017176842677e-12 49183 chr18 67992422 67992422 1 + A C UCEC 67992418 + 67992398 67992438 41 GTCCAGCCCTGAATGGCGTCCGGAAGGATTTCCACGACCTC GTCCAGCCCTGAATGGCGTCCGGACGGATTTCCACGACCTC < 41bp 0.805248526893868 0.430189471004217 0.9062686 0.8766166 prediction 0.610497053787737 Functional Loss - SOCS6 ENSG00000170677 CDS Human protein_coding chr18:67992418 chr18:67992422 nonsynonymous SNV 0.063 2 25 hm5C_associated_SNPs_53831 0 0 0 0 0 Ribosome 0.500231643921092 0.500231638789837 0.059304 1.02625112852195e-08 hm5C_site_49183 DeepMRMD:0.059304;iRNA_m5C:1.02625112852195e-08 49184 chr2 157367401 157367401 1 + A C LUSC 157367397 + 157367377 157367417 41 TCCATGGTGGTGTGAGATATCTGCAGAAGGCCATCATGAAG TCCATGGTGGTGTGAGATATCTGCCGAAGGCCATCATGAAG < 41bp 0.898112732288968 0.592866207911466 0.18008658 0.15510672 prediction 0.610493048755003 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157367397 chr2:157367401 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53832 0 0 1 2 1 Endoplasmic reticulum 0.500231670518435 0.500231574902304 0 1.91232260693397e-07 hm5C_site_49184 DeepMRMD:0;iRNA_m5C:1.91232260693397e-07 49185 chr19 18085084 18085084 1 + G T LUAD 18085081 + 18085061 18085101 41 GTGACGGAGACCGAGCTGTCCTGGGGGGTGTACACCAAGGT GTGACGGAGACCGAGCTGTCCTGTGGGGTGTACACCAAGGT < 41bp 0.805241190320662 0.442440272964587 0.6908065 0.21018362 prediction 0.610482380641324 Functional Loss - KCNN1 ENSG00000105642 CDS Human protein_coding chr19:18085081 chr19:18085084 nonsynonymous SNV 0.844 3 24 hm5C_associated_SNPs_53833 0 0 0 0 1 nucleolus 0.500235086350636 0.500237874341788 0.381613 0 hm5C_site_49185 DeepMRMD:0.381613;iRNA_m5C:0 49186 chr2 209308194 209308194 1 + G T HNSC 209308191 + 209308171 209308211 41 CTCACATAGGAGTAAAGGAGCTGGAGTCCCTAATAATGCAG CTCACATAGGAGTAAAGGAGCTGTAGTCCCTAATAATGCAG < 41bp 0.805240918183415 0.445215812834871 0.05650857 0.027958542 prediction 0.61048183636683 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209308191 chr2:209308194 stopgain 0.575 0 24 hm5C_associated_SNPs_53834 0 0 0 0 1 exosome 0.500231643921094 0.500231643921092 0 2.22044604925031e-15 hm5C_site_49186 DeepMRMD:0;iRNA_m5C:2.22044604925031e-15 49187 chr19 11145616 11145616 1 + G T UCEC 11145613 + 11145593 11145633 41 ATGGACCTGGACCGCAGGCGCGAGGAGGCCCGCAACCCCAA ATGGACCTGGACCGCAGGCGCGATGAGGCCCGCAACCCCAA < 41bp 0.805223742500988 0.448108489944171 0.89771414 0.48685926 prediction 0.610447485001976 Functional Loss - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145613 chr19:11145616 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_53835 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0.79542828 0 hm5C_site_49187 DeepMRMD:0.79542828;iRNA_m5C:0 49188 chr16 19451377 19451377 1 + G T LGG 19451375 + 19451355 19451395 41 ACCAACATGTCTGCCTACTACAGGAATAACTGGTCTGAGGA ACCAACATGTCTGCCTACTACATGAATAACTGGTCTGAGGA < 41bp 0.805217256137994 0.498857451802336 0.35039383 0.084822476 prediction 0.610434512275988 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19451375 chr16:19451377 nonsynonymous SNV 0.027 1 23 hm5C_associated_SNPs_53836 0 0 0 0 1 cytosol 0.500231643921099 0.500231640792677 0 6.25684504207413e-09 hm5C_site_49188 DeepMRMD:0;iRNA_m5C:6.25684504207413e-09 49189 chr22 23487711 23487711 1 + G T rs139746925 23487708 + 23487688 23487728 41 GGCTCAGGCGGACCAGGCCGCGCGGAGCCCCAGCTTTCACA GGCTCAGGCGGACCAGGCCGCGCTGAGCCCCAGCTTTCACA < 41bp 0.805196350803249 0.4318933618385 0.8633976 0.30499208 prediction 0.610392701606497 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23487708 chr22:23487711 synonymous SNV . 0 24 hm5C_associated_SNPs_53837 0 0 0 0 1 Nucleus 0.500231643934519 0.500231643921093 0.7267952 2.68525202073988e-11 hm5C_site_49189 DeepMRMD:0.7267952;iRNA_m5C:2.68525202073988e-11 49190 chr1 152636836 152636836 1 + G T LUSC 152636834 + 152636814 152636854 41 CCCGTCTCTTCCACCGGCGCCGGCACCAGAGCCCCGATTGC CCCGTCTCTTCCACCGGCGCCGTCACCAGAGCCCCGATTGC < 41bp 0.805194131794367 0.487982158844315 0.6202239 0.095398515 prediction 0.610388263588734 Functional Loss - LCE2D ENSG00000187223 CDS Human protein_coding chr1:152636834 chr1:152636836 synonymous SNV . 0 23 hm5C_associated_SNPs_53838 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.2404478 0 hm5C_site_49190 DeepMRMD:0.2404478;iRNA_m5C:0 49191 chr7 80303351 80303351 1 + G T SARC 80303348 + 80303328 80303368 41 CATGTTCAGAAGTCAAGTAACTGGAAAAATAAACCTCCTTG CATGTTCAGAAGTCAAGTAACTGTAAAAATAAACCTCCTTG < 41bp 0.805193556102071 0.464903461564161 0.137106 0.06938386 prediction 0.610387112204142 Functional Loss - CD36 ENSG00000135218 CDS Human protein_coding chr7:80303348 chr7:80303351 nonsynonymous SNV 0.979 2 24 hm5C_associated_SNPs_53839 0 0 0 0 1 Nucleus 0.500231671407895 0.500231659811745 0 2.31923003024548e-08 hm5C_site_49191 DeepMRMD:0;iRNA_m5C:2.31923003024548e-08 49192 chr17 74464954 74464954 1 + G T STAD 74464951 + 74464931 74464971 41 AGTGAGTTTCGCTGCCTCACCCCGGAGGACGCTGTCAGCGC AGTGAGTTTCGCTGCCTCACCCCTGAGGACGCTGTCAGCGC < 41bp 0.805190648487074 0.419139539275441 0.24034083 0.08299601 prediction 0.610381296974147 Functional Loss - AANAT ENSG00000129673 CDS Human protein_coding chr17:74464951 chr17:74464954 synonymous SNV . 0 24 hm5C_associated_SNPs_53840 0 0 0 0 1 exosome 0.500231643921092 0.500231639168721 0 9.5047427706163e-09 hm5C_site_49192 DeepMRMD:0;iRNA_m5C:9.5047427706163e-09 49193 chr17 7533817 7533817 1 + G T UCEC 7533814 + 7533794 7533834 41 GTCATGACCTTTGACCTCACCAAGATCACAAAGTATGGGGT GTCATGACCTTTGACCTCACCAATATCACAAAGTATGGGGT < 41bp 0.805577546149301 0.500389735931641 0.04373175 0.01607576 prediction 0.610375620435322 Functional Loss - SHBG ENSG00000129214 CDS Human protein_coding chr17:7533814 chr17:7533817 nonsynonymous SNV 0.657 0 24 hm5C_associated_SNPs_53841 0 0 0 0 2 cytosol 0.500231644027282 0.500231643921107 0 2.12350137474004e-10 hm5C_site_49193 DeepMRMD:0;iRNA_m5C:2.12350137474004e-10 49194 chr6 158492769 158492769 1 + G T UCEC 158492767 + 158492747 158492787 41 ACCTGACGGCCGGGCAGTCCCAGGTGAAGGAGCGGAATGAA ACCTGACGGCCGGGCAGTCCCATGTGAAGGAGCGGAATGAA < 41bp 0.82879825975069 0.523613556019239 0.87939644 0.2562168 prediction 0.610369407462902 Functional Loss - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158492767 chr6:158492769 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_53842 0 0 1 0 1 Cytosol 0.500230680546499 0.500231643921086 0.75879288 0 hm5C_site_49194 DeepMRMD:0.75879288;iRNA_m5C:0 49195 chr3 141497340 141497340 1 + G T rs79064253 141497337 + 141497317 141497357 41 CCATCGGTCGCCGCCTCTTCCGTGACTTCCTAGCCACAGTG CCATCGGTCGCCGCCTCTTCCGTTACTTCCTAGCCACAGTG < 41bp 0.805180993355872 0.42635036672796 0.89646816 0.26983976 prediction 0.610361986711745 Functional Loss - GRK7 ENSG00000114124 CDS Human protein_coding chr3:141497337 chr3:141497340 nonsynonymous SNV 0.565 3 24 hm5C_associated_SNPs_53843 0 0 0 0 0 exosome 0.500232004495763 0.500231643921094 0.79293632 7.21149337801208e-07 hm5C_site_49195 DeepMRMD:0.79293632;iRNA_m5C:7.21149337801208e-07 49196 chr22 51183233 51183233 1 + G T UCEC 51183230 + 51183210 51183250 41 TATCTGAACTGGATCGCCTCCAAGATTGGTTCTAACGCTTT TATCTGAACTGGATCGCCTCCAATATTGGTTCTAACGCTTT < 41bp 0.805177637785575 0.436548887485423 0.22353327 0.020671159 prediction 0.610355275571149 Functional Loss - ACR ENSG00000100312 CDS Human protein_coding chr22:51183230 chr22:51183233 nonsynonymous SNV 0.922 1 24 hm5C_associated_SNPs_53844 0 0 0 0 0 exosome 0.500231643921112 0.500231643921094 0 3.75255382323303e-14 hm5C_site_49196 DeepMRMD:0;iRNA_m5C:3.75255382323303e-14 49197 chr16 67961331 67961331 1 + G T UCEC 67961328 + 67961308 67961348 41 ACTGCAGGCCCTGAGGCACCCGTGGGTGGTGAGCATGGCTG ACTGCAGGCCCTGAGGCACCCGTTGGTGGTGAGCATGGCTG < 41bp 0.80516311822372 0.442561235204546 0.63395023 0.08028355 prediction 0.61032623644744 Functional Loss - PSKH1 ENSG00000159792 CDS Human protein_coding chr16:67961328 chr16:67961331 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_53845 0 0 0 0 0 Cytosol 0.50023164382565 0.500231692367535 0.26790046 0 hm5C_site_49197 DeepMRMD:0.26790046;iRNA_m5C:0 49198 chr16 2577778 2577778 1 + G T LUSC 2577776 + 2577756 2577796 41 CTTGCTCCCTCCTCCCAGGGCTGCACCTGGAGGGCCCCTTC CTTGCTCCCTCCTCCCAGGGCTTCACCTGGAGGGCCCCTTC < 41bp 0.805159238829874 0.486162755508664 0.2834053 0.21462885 prediction 0.610318477659748 Functional Loss - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577776 chr16:2577778 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53846 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_49198 DeepMRMD:0;iRNA_m5C:0 49199 chrX 79279608 79279608 1 + G T UCEC 79279605 + 79279585 79279625 41 TCAAGGTGAAAGGGTTGGATCCAGGGAAGCAGTACCATGTG TCAAGGTGAAAGGGTTGGATCCATGGAAGCAGTACCATGTG < 41bp 0.805158054629677 0.424940121408229 0.90274435 0.26796556 prediction 0.610316109259354 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79279605 chrX:79279608 nonsynonymous SNV 0.471 3 24 hm5C_associated_SNPs_53847 0 0 0 0 2 unknown 0.50023164392109 0.500231643921093 0.8054887 0 hm5C_site_49199 DeepMRMD:0.8054887;iRNA_m5C:0 49200 chr6 42891034 42891034 1 + G T LUSC 42891032 + 42891012 42891052 41 GGAGCCTTTGGTCTGCCACACTGGGCCTGGGGCTGAGGGTC GGAGCCTTTGGTCTGCCACACTTGGCCTGGGGCTGAGGGTC < 41bp 0.841365567771187 0.536213517100933 0.7858632 0.19680703 prediction 0.610304101340509 Functional Loss - PTCRA ENSG00000171611 CDS Human protein_coding chr6:42891032 chr6:42891034 nonsynonymous SNV 0.103 3 23 hm5C_associated_SNPs_53848 0 0 0 0 0 exosome 0.500231722841822 0.500231642695284 0.5717264 1.6029307592369e-07 hm5C_site_49200 DeepMRMD:0.5717264;iRNA_m5C:1.6029307592369e-07 Cerebral amyloid deposition (PET imaging) 49201 chr10 70706355 70706355 1 + G T UCEC 70706352 + 70706332 70706372 41 AAGTGGGAATAGAAATCGATCAAGAAGTGGGGGCCACAAAC AAGTGGGAATAGAAATCGATCAATAAGTGGGGGCCACAAAC < 41bp 0.805135267207685 0.454824186800187 0.8914444 0.33905053 prediction 0.610270534415369 Functional Loss - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70706352 chr10:70706355 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_53849 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.7828888 0 hm5C_site_49201 DeepMRMD:0.7828888;iRNA_m5C:0 49202 chr17 37901726 37901726 1 + G T LUSC 37901724 + 37901704 37901744 41 CATGGACTTCTCTGGCCATGCTGGGCGTGTCATTGAGAACC CATGGACTTCTCTGGCCATGCTTGGCGTGTCATTGAGAACC < 41bp 0.832807255883441 0.527672322684091 0.81643516 0.24749601 prediction 0.6102698663987 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37901724 chr17:37901726 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_53850 0 0 1 0 1 Cytosol 0.500232167426958 0.500231674625088 0.63287032 9.85603740177865e-07 hm5C_site_49202 DeepMRMD:0.63287032;iRNA_m5C:9.85603740177865e-07 49203 chr1 167666425 167666425 1 + G T KIRC 167666422 + 167666402 167666442 41 TGTGGAGAACTTGGAGATTTCAGGGCGGTGGAGTCATCTCA TGTGGAGAACTTGGAGATTTCAGTGCGGTGGAGTCATCTCA < 41bp 0.890410889797631 0.585290254398806 0.9015397 0.6061763 prediction 0.610241270797649 Functional Loss - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167666422 chr1:167666425 nonsynonymous SNV 0.856 0 24 hm5C_associated_SNPs_53851 0 0 0 0 1 chromatin 0.500231643920447 0.50023164395338 0.5907268 0 hm5C_site_49203 DeepMRMD:0.5907268;iRNA_m5C:0 49204 chr3 37458897 37458897 1 + G T LUAD 37458895 + 37458875 37458915 41 TTAACACATGGAATAATAAACAGAGGAAGGCGGGCTAATGC TTAACACATGGAATAATAAACATAGGAAGGCGGGCTAATGC < 41bp 0.805117503949064 0.492855388619667 0.9011163 0.40105453 prediction 0.610235007898128 Functional Loss - C3orf35 ENSG00000198590 CDS Human protein_coding chr3:37458895 chr3:37458897 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53852 0 0 0 0 1 unknown 0.500231643606597 0.500231656309963 0.8022326 0 hm5C_site_49204 DeepMRMD:0.8022326;iRNA_m5C:0 49205 chr14 19377684 19377684 1 + G T LUAD 19377681 + 19377661 19377701 41 TTGTAAATGAATTTATACTCCAAGGTTTCACTTGTGAGTGG TTGTAAATGAATTTATACTCCAATGTTTCACTTGTGAGTGG < 41bp 0.805087679519683 0.456034979022195 0.18305936 0.02714482 prediction 0.610175359039366 Functional Loss - OR11H12 ENSG00000257115 CDS Human protein_coding chr14:19377681 chr14:19377684 nonsynonymous SNV 0.079 3 24 hm5C_associated_SNPs_53853 0 0 0 0 0 unknown 0.500231643922259 0.500231643921092 0 2.33368879776208e-12 hm5C_site_49205 DeepMRMD:0;iRNA_m5C:2.33368879776208e-12 49206 chr17 19285706 19285706 1 + G T HNSC 19285704 + 19285684 19285724 41 GGCCTGCCGCCCCCAGACGCCGGGGGAGCCCCTCAGTCTTC GGCCTGCCGCCCCCAGACGCCGTGGGAGCCCCTCAGTCTTC < 41bp 0.84483026235887 0.539748583094343 0.9290841 0.8022732 prediction 0.610163358529054 Functional Loss - MAPK7 ENSG00000166484 CDS Human protein_coding chr17:19285704 chr17:19285706 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_53854 0 0 0 0 1 exosome 0.500231643922868 0.500231643921511 0.2536218 2.71582756283806e-12 hm5C_site_49206 DeepMRMD:0.2536218;iRNA_m5C:2.71582756283806e-12 49207 chr2 85662864 85662864 1 + G T COAD 85662861 + 85662841 85662881 41 TCACCCTGGCAGTGCTTCTCCGAGGCCGGGTCTTCAACATT TCACCCTGGCAGTGCTTCTCCGATGCCGGGTCTTCAACATT < 41bp 0.805075371584014 0.42119307026711 0.9242404 0.7011263 prediction 0.610150743168028 Functional Loss - SH2D6 ENSG00000152292 CDS Human protein_coding chr2:85662861 chr2:85662864 nonsynonymous SNV 0.527 4 24 hm5C_associated_SNPs_53855 0 0 0 3 3 exosome 0.500231643921092 0.500231643920935 0.4462282 3.15525383598469e-13 hm5C_site_49207 DeepMRMD:0.4462282;iRNA_m5C:3.15525383598469e-13 49208 chr4 17838849 17838849 1 + G T PRAD 17838847 + 17838827 17838867 41 ATGTTCTCTGGGCTTTTGGTCAGCAGCAGGATTCTTTCTCG ATGTTCTCTGGGCTTTTGGTCATCAGCAGGATTCTTTCTCG < 41bp 0.805073634058001 0.489838379503362 0.34475398 0.09217957 prediction 0.610147268116003 Functional Loss - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17838847 chr4:17838849 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53856 0 0 1 0 1 Exosome 0.500231716985571 0.500231644317419 0 1.45336304102628e-07 hm5C_site_49208 DeepMRMD:0;iRNA_m5C:1.45336304102628e-07 49209 chr9 136891828 136891828 1 + G T CESC 136891826 + 136891806 136891846 41 TTAGTGCGCGTGGGCCGTCTCAGAACAGCAGGGTTCCCAGG TTAGTGCGCGTGGGCCGTCTCATAACAGCAGGGTTCCCAGG < 41bp 0.833926465778425 0.528864171850384 0.89744884 0.20481488 prediction 0.610124587856082 Functional Loss - LINC00094 ENSG00000235106 ncRNA_exonic Human protein_coding chr9:136891826 chr9:136891828 . . 0 23 hm5C_associated_SNPs_53857 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0.79489768 0 hm5C_site_49209 DeepMRMD:0.79489768;iRNA_m5C:0 49210 chr18 19780756 19780756 1 + G T LUAD 19780754 + 19780734 19780774 41 AAGTCACGTCCTCCGTGCGACCGGATTCCTGGTGCGCCCTG AAGTCACGTCCTCCGTGCGACCTGATTCCTGGTGCGCCCTG < 41bp 0.805062197612966 0.488817252017287 0.265027 0.13653776 prediction 0.610124395225933 Functional Loss - GATA6 ENSG00000141448 CDS Human protein_coding chr18:19780754 chr18:19780756 synonymous SNV . 0 23 hm5C_associated_SNPs_53858 0 0 0 0 0 Cytosol 0.500231644177454 0.500231644942832 0 0 hm5C_site_49210 DeepMRMD:0;iRNA_m5C:0 49211 chr5 145317770 145317770 1 + G T CESC 145317767 + 145317747 145317787 41 GGCTCCTTCCGCAGGCCTGGCACGATGACCTTGCAGGATGG GGCTCCTTCCGCAGGCCTGGCACTATGACCTTGCAGGATGG < 41bp 0.805061327987296 0.448513673620373 0.08308175 0.12898904 prediction 0.610122655974592 Functional Loss - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145317767 chr5:145317770 synonymous SNV . 0 24 hm5C_associated_SNPs_53859 0 0 1 0 1 exosome 0.500231643921092 0.500231643921078 0 2.8643754035329e-14 hm5C_site_49211 DeepMRMD:0;iRNA_m5C:2.8643754035329e-14 49212 chr16 21190853 21190853 1 + A C rs1063087 21190849 + 21190829 21190869 41 TCTGCCAGCCATGAAGTCTGCAGAATTCGAGGGGCTTTACC TCTGCCAGCCATGAAGTCTGCAGACTTCGAGGGGCTTTACC < 41bp 0.805053193589493 0.435300675999659 0.5225234 0.57434833 prediction 0.610106387178986 Functional Loss - TMEM159 ENSG00000011638 CDS Human protein_coding chr16:21190849 chr16:21190853 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_53860 0 0 0 1 1 Ribosome 0.500231643921088 0.500231643960294 0 0 hm5C_site_49212 DeepMRMD:0;iRNA_m5C:0 49213 chr12 95228600 95228600 1 + G T SARC 95228597 + 95228577 95228617 41 GGAACTGAACCAGGAGGTCACTGGCCACATAGAGCAGCTCC GGAACTGAACCAGGAGGTCACTGTCCACATAGAGCAGCTCC < 41bp 0.805037166819939 0.452146267708428 0.24916208 0.087390065 prediction 0.610074333639878 Functional Loss - KRT19P2 ENSG00000216306 ncRNA_exonic Human transcribed_processed_pseudogene chr12:95228597 chr12:95228600 . . 0 24 hm5C_associated_SNPs_53861 0 0 0 0 0 unknown 0.500231374113634 0.500231510109146 0 0 hm5C_site_49213 DeepMRMD:0;iRNA_m5C:0 49214 chr1 147086365 147086365 1 + G T UCEC 147086363 + 147086343 147086383 41 CCACAGAGCCCACACCTGCTCAGAAGACTCCAGCCAAAGTG CCACAGAGCCCACACCTGCTCATAAGACTCCAGCCAAAGTG < 41bp 0.805036545574339 0.476863969990654 0.16270965 0.03918448 prediction 0.610073091148678 Functional Loss - BCL9 ENSG00000116128 CDS Human protein_coding chr1:147086363 chr1:147086365 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53862 0 0 0 0 1 Nucleus 0.500231643921082 0.500231643921093 0 0 hm5C_site_49214 DeepMRMD:0;iRNA_m5C:0 49215 chr5 140563173 140563173 1 + G T rs28664170 140563170 + 140563150 140563190 41 ACGTGAATGACAATCCCCCACAGGTGACCATGTCTGCACTC ACGTGAATGACAATCCCCCACAGTTGACCATGTCTGCACTC < 41bp 0.805029969512918 0.42793424907388 0.86052805 0.30133992 prediction 0.610059939025836 Functional Loss - PCDHB16 ENSG00000196963 CDS Human other chr5:140563170 chr5:140563173 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_53863 0 0 0 0 0 Nucleus 0.500231643931104 0.500231643921095 0.7210561 2.00177652232014e-11 hm5C_site_49215 DeepMRMD:0.7210561;iRNA_m5C:2.00177652232014e-11 49216 chr3 196386747 196386747 1 + A T LUAD 196386743 + 196386723 196386763 41 AGACCCTGTGGAATCACTCCCTCCAGCCTTACCCTCTCCTG AGACCCTGTGGAATCACTCCCTCCTGCCTTACCCTCTCCTG < 41bp 0.805018182296338 0.491369117799951 0.93011177 0.096678615 prediction 0.610036364592677 Functional Loss - NRROS ENSG00000174004 CDS Human protein_coding chr3:196386743 chr3:196386747 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_53864 0 0 0 0 0 chromatin 0.500231643916042 0.500231643908994 0.86022354 1.4095391520641e-11 hm5C_site_49216 DeepMRMD:0.86022354;iRNA_m5C:1.4095391520641e-11 49217 chr18 61650839 61650839 1 + G T GBM 61650837 + 61650817 61650857 41 GATTTCAGAGGTACTGGATGCTGGGACAGTCGATCCCCTGA GATTTCAGAGGTACTGGATGCTTGGACAGTCGATCCCCTGA < 41bp 0.830244005178893 0.525227808158308 0.7620038 0.13478607 prediction 0.610032394041171 Functional Loss - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61650837 chr18:61650839 nonsynonymous SNV 0.044 5 23 hm5C_associated_SNPs_53865 0 0 0 0 1 nucleus 0.500231642713757 0.500231643917147 0.5240076 0 hm5C_site_49217 DeepMRMD:0.5240076;iRNA_m5C:0 49218 chr4 189060745 189060745 1 + G T UCEC 189060742 + 189060722 189060762 41 GCAGATCTGATGGAGAACCTCAGGGAGGAACTCACCTGTTT GCAGATCTGATGGAGAACCTCAGTGAGGAACTCACCTGTTT < 41bp 0.884536059233686 0.579525550587993 0.9072828 0.21525067 prediction 0.610021017291388 Functional Loss - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189060742 chr4:189060745 nonsynonymous SNV 0.962 2 24 hm5C_associated_SNPs_53866 0 0 0 0 0 nucleus 0.500231643920936 0.500231714024437 0.8145656 0 hm5C_site_49218 DeepMRMD:0.8145656;iRNA_m5C:0 49219 chr6 26158529 26158529 1 + G T COAD 26158526 + 26158506 26158546 41 AGCTATTCAGTGTATGTGTACAAGGTGCTGAAGCAGGTCCA AGCTATTCAGTGTATGTGTACAATGTGCTGAAGCAGGTCCA < 41bp 0.805009126515841 0.43415175891846 0.42181015 0.122568816 prediction 0.610018253031682 Functional Loss - HIST1H2BD ENSG00000158373 CDS Human protein_coding chr6:26158526 chr6:26158529 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_53867 0 0 1 0 0 Cytosol 0.500231620344558 0.500231648257586 0 0 hm5C_site_49219 DeepMRMD:0;iRNA_m5C:0 49220 chr12 104376697 104376697 1 + G T LUSC 104376695 + 104376675 104376715 41 GTGGAAAGGACCACGCCCGGCAGCAAAGATCTCTCCAGGTA GTGGAAAGGACCACGCCCGGCATCAAAGATCTCTCCAGGTA < 41bp 0.819274232468035 0.514266939011398 0.2744542 0.15240458 prediction 0.610014586913273 Functional Loss - TDG ENSG00000139372 CDS Human protein_coding chr12:104376695 chr12:104376697 nonsynonymous SNV 0.909 4 23 hm5C_associated_SNPs_53868 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921095 0 0 hm5C_site_49220 DeepMRMD:0;iRNA_m5C:0 49221 chr8 39785599 39785599 1 + A C COAD 39785595 + 39785575 39785615 41 GCCAAAGGAGAATAAGACCTCTGAAGACCCTTCAAAACTGG GCCAAAGGAGAATAAGACCTCTGACGACCCTTCAAAACTGG < 41bp 0.805007200400667 0.422556906565045 0.08269358 0.02650392 prediction 0.610014400801334 Functional Loss - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39785595 chr8:39785599 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_53869 0 0 0 1 0 Cytosol 0.500231643920596 0.500231631993665 0 2.38538619967699e-08 hm5C_site_49221 DeepMRMD:0;iRNA_m5C:2.38538619967699e-08 49222 chr20 31652345 31652345 1 + G T HNSC 31652343 + 31652323 31652363 41 TCTCCAACCAGTACATAGAACTGGACATCAACGTGAGTAAC TCTCCAACCAGTACATAGAACTTGACATCAACGTGAGTAAC < 41bp 0.804995055894263 0.48581309486196 0.4133781 0.1495862 prediction 0.609990111788526 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31652343 chr20:31652345 synonymous SNV . 0 23 hm5C_associated_SNPs_53870 0 0 0 0 2 exosome 0.500231632632911 0.500231643485936 0 0 hm5C_site_49222 DeepMRMD:0;iRNA_m5C:0 49223 chr17 4836362 4836362 1 + C A KIRC 4836364 - 4836344 4836384 41 GGCGTCAGGAGCCCTGGGGGCAGGGTCTTCAGCTCATTGCC GGCGTCAGGAGCCCTGGGGGCATGGTCTTCAGCTCATTGCC < 41bp 0.843675971724755 0.538685013420114 0.9086464 0.6928574 prediction 0.609981916609282 Functional Loss - GP1BA ENSG00000185245 CDS Human protein_coding chr17:4836364 chr17:4836362 nonsynonymous SNV 0.236 3 23 hm5C_associated_SNPs_53871 0 0 1 0 0 exosome 0.500231643927019 0.500231643921175 0.431578 1.16879839140438e-11 hm5C_site_49223 DeepMRMD:0.431578;iRNA_m5C:1.16879839140438e-11 49224 chr6 52268744 52268744 1 + G T SARC 52268742 + 52268722 52268762 41 GGCTGGCTGCCAGGAGCAAGCAGCCTGGTACCACACCCTCC GGCTGGCTGCCAGGAGCAAGCATCCTGGTACCACACCCTCC < 41bp 0.804990686926729 0.480179351174999 0.8637802 0.5485639 prediction 0.609981373853457 Functional Loss - PAQR8 ENSG00000170915 CDS Human protein_coding chr6:52268742 chr6:52268744 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_53872 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643920604 0.6304326 9.77440350879988e-13 hm5C_site_49224 DeepMRMD:0.6304326;iRNA_m5C:9.77440350879988e-13 49225 chr20 47851569 47851569 1 + G T LUAD 47851567 + 47851547 47851587 41 TCCTCCTGGGGCTCATGGGGCTGCAGGTGGGTGAGCTCCAT TCCTCCTGGGGCTCATGGGGCTTCAGGTGGGTGAGCTCCAT < 41bp 0.804985934347569 0.495268312395199 0.5285608 0.42296302 prediction 0.609971868695139 Functional Loss - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47851567 chr20:47851569 synonymous SNV . 0 23 hm5C_associated_SNPs_53873 0 0 1 0 2 chromatin 0.500231643921092 0.500231643921092 0.0571216000000001 0 hm5C_site_49225 DeepMRMD:0.0571216000000001;iRNA_m5C:0 49226 chr4 166986864 166986864 1 + G T LUAD 166986861 + 166986841 166986881 41 AAATATGATTATGTGGAGATCTGGAGTGGTCTTTCCTCTGA AAATATGATTATGTGGAGATCTGTAGTGGTCTTTCCTCTGA < 41bp 0.804977583281686 0.453518865504566 0.5161909 0.2892313 prediction 0.609955166563372 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166986861 chr4:166986864 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53874 0 0 0 0 1 nucleus 0.500231602465136 0.500231643921301 0.0323818 0 hm5C_site_49226 DeepMRMD:0.0323818;iRNA_m5C:0 49227 chr1 159799720 159799720 1 + G T THCA 159799718 + 159799698 159799738 41 AAGTCGGGGGCTCGGTGCTGCTGGTGGCAGCGCGTCCCCCT AAGTCGGGGGCTCGGTGCTGCTTGTGGCAGCGCGTCCCCCT < 41bp 0.848868225570066 0.543893603497553 0.50831556 0.45642054 prediction 0.609949244145026 Functional Loss - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159799718 chr1:159799720 synonymous SNV . 0 23 hm5C_associated_SNPs_53875 0 0 0 0 1 exosome 0.500231643919597 0.500231643921093 0.01663112 0 hm5C_site_49227 DeepMRMD:0.01663112;iRNA_m5C:0 49228 chrX 22291806 22291806 1 + G T UCEC 22291803 + 22291783 22291823 41 GGAAACCGTTAGTATTTTTACGAGAAAACATGGCAATTTAA GGAAACCGTTAGTATTTTTACGATAAAACATGGCAATTTAA < 41bp 0.804972689935498 0.452424085217731 0.35079947 0.061567783 prediction 0.609945379870997 Functional Loss - ZNF645 ENSG00000175809 CDS Human protein_coding chrX:22291803 chrX:22291806 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_53876 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 1.55431223447522e-15 hm5C_site_49228 DeepMRMD:0;iRNA_m5C:1.55431223447522e-15 49229 chr19 30936461 30936461 1 + G T COAD 30936459 + 30936439 30936479 41 GCAAGGGCGAGGAGGATGGGCTGCACGTGGGCCTGGATGAG GCAAGGGCGAGGAGGATGGGCTTCACGTGGGCCTGGATGAG < 41bp 0.804956351793176 0.488915928605079 0.47766608 0.5031028 prediction 0.609912703586353 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936459 chr19:30936461 synonymous SNV . 0 23 hm5C_associated_SNPs_53877 0 0 1 0 0 exosome 0.500231643890481 0.500231643921092 0 0 hm5C_site_49229 DeepMRMD:0;iRNA_m5C:0 49230 chr19 58265931 58265931 1 + A C LUSC 58265927 + 58265907 58265947 41 ATCAAAAGGGCAGTCTCATTCGACATCAGCAGATTCACTCT ATCAAAAGGGCAGTCTCATTCGACCTCAGCAGATTCACTCT < 41bp 0.804955456832135 0.418486269506084 0.2894819 0.36386514 prediction 0.60991091366427 Functional Loss - ZNF776 ENSG00000152443 CDS Human protein_coding chr19:58265927 chr19:58265931 nonsynonymous SNV 0.006 4 25 hm5C_associated_SNPs_53878 0 0 1 0 0 chromatin 0.500231606183806 0.500231643915883 0 0 hm5C_site_49230 DeepMRMD:0;iRNA_m5C:0 49231 chr16 21245128 21245128 1 + G T COAD 21245125 + 21245105 21245145 41 TTCTAAAAGAGGCTACCAAGCGAGATCTAAATCTTTCGGAT TTCTAAAAGAGGCTACCAAGCGATATCTAAATCTTTCGGAT < 41bp 0.870470484931812 0.565518242187791 0.7667225 0.28976852 prediction 0.609904485488042 Functional Loss - ANKS4B ENSG00000175311 CDS Human protein_coding chr16:21245125 chr16:21245128 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_53879 0 0 1 0 0 exosome 0.500231643921079 0.500231647036493 0.533445 0 hm5C_site_49231 DeepMRMD:0.533445;iRNA_m5C:0 49232 chr1 206611390 206611390 1 + G T STAD 206611388 + 206611368 206611408 41 GTGTCCTGAAGCTTTACTTCCGGGGGCTGGAACACCCTCTC GTGTCCTGAAGCTTTACTTCCGTGGGCTGGAACACCCTCTC < 41bp 0.804946589731388 0.476113651746852 0.9454127 0.90589875 prediction 0.609893179462775 Functional Loss - SRGAP2 ENSG00000163486 CDS Human other chr1:206611388 chr1:206611390 synonymous SNV . 0 23 hm5C_associated_SNPs_53880 0 0 1 0 2 chromatin 0.500231643925435 0.50023164392113 0.0790279 8.60933546675824e-12 hm5C_site_49232 DeepMRMD:0.0790279;iRNA_m5C:8.60933546675824e-12 GIP levels in response to oral glucose tolerance test (fasting) 49233 chr22 36123159 36123159 1 + G T LUSC 36123157 + 36123137 36123177 41 ACCGGCTCACCCAGCACCACCGGCACCTGCCGCAGAAGGCG ACCGGCTCACCCAGCACCACCGTCACCTGCCGCAGAAGGCG < 41bp 0.804946131804223 0.485309964697805 0.41892797 0.1139856 prediction 0.609892263608447 Functional Loss - APOL5 ENSG00000128313 CDS Human protein_coding chr22:36123157 chr22:36123159 synonymous SNV . 0 23 hm5C_associated_SNPs_53881 0 0 0 0 1 unknown 0.500231643987966 0.50023164392213 0 1.31673116854358e-10 hm5C_site_49233 DeepMRMD:0;iRNA_m5C:1.31673116854358e-10 49234 chr11 59224983 59224983 1 + G T HNSC 59224980 + 59224960 59225000 41 CCTTCTACTGTTATGTGCTCCAGGTGGTAAAACTGGCCTGC CCTTCTACTGTTATGTGCTCCAGTTGGTAAAACTGGCCTGC < 41bp 0.804945512087003 0.428363068611535 0.8762104 0.3219875 prediction 0.609891024174006 Functional Loss - OR4D6 ENSG00000166884 CDS Human protein_coding chr11:59224980 chr11:59224983 nonsynonymous SNV 0.784 0 24 hm5C_associated_SNPs_53882 0 0 0 0 0 unknown 0.50023164288727 0.500231643920291 0.7524208 0 hm5C_site_49234 DeepMRMD:0.7524208;iRNA_m5C:0 49235 chr4 20599947 20599947 1 + G T LUSC 20599944 + 20599924 20599964 41 AAGGGTGACAAAGACCATATCGCGGTAGAACTCTATCGGGG AAGGGTGACAAAGACCATATCGCTGTAGAACTCTATCGGGG < 41bp 0.80491934900611 0.45285023615888 0.48472825 0.01754874 prediction 0.60983869801222 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20599944 chr4:20599947 synonymous SNV . 0 24 hm5C_associated_SNPs_53883 0 0 1 0 2 Ribosome 0.500231643921094 0.50023164392141 0 0 hm5C_site_49235 DeepMRMD:0;iRNA_m5C:0 49236 chr16 30409152 30409152 1 + G T LUAD 30409150 + 30409130 30409170 41 GCTGGTGAGCGCCCCACTATCTGTGGTGAATGTGGCAAGAG GCTGGTGAGCGCCCCACTATCTTTGGTGAATGTGGCAAGAG < 41bp 0.804917176364019 0.493581128243969 0.6937748 0.3207063 prediction 0.609834352728038 Functional Loss - ZNF48 ENSG00000180035 CDS Human protein_coding chr16:30409150 chr16:30409152 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_53884 0 0 1 0 0 Ribosome 0.500231644479454 0.500231659467032 0.3875496 0 hm5C_site_49236 DeepMRMD:0.3875496;iRNA_m5C:0 49237 chr6 96034716 96034716 1 + G T LUAD 96034713 + 96034693 96034733 41 AGTGTTAGAGCATTGGGACCCTAGAATAGCCAAGAATTATC AGTGTTAGAGCATTGGGACCCTATAATAGCCAAGAATTATC < 41bp 0.845628272195797 0.540711469328775 0.44307745 0.9333511 prediction 0.609833605734044 Functional Loss - MANEA ENSG00000172469 CDS Human protein_coding chr6:96034713 chr6:96034716 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_53885 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643939953 0 0 hm5C_site_49237 DeepMRMD:0;iRNA_m5C:0 49238 chr17 40935987 40935987 1 + G T UCEC 40935984 + 40935964 40936004 41 GCGGTTCCGGGAGATGAAGCCGCGGGTCCTTCAGCGCTGGA GCGGTTCCGGGAGATGAAGCCGCTGGTCCTTCAGCGCTGGA < 41bp 0.886500569759201 0.581585955411913 0.9221642 0.87240195 prediction 0.609829228694576 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40935984 chr17:40935987 nonsynonymous SNV 0.945 2 24 hm5C_associated_SNPs_53886 0 0 1 0 1 chromatin 0.500231643921092 0.50023164384093 0.0995245 1.60325752673884e-10 hm5C_site_49238 DeepMRMD:0.0995245;iRNA_m5C:1.60325752673884e-10 49239 chr17 55123153 55123153 1 + G T COAD 55123150 + 55123130 55123170 41 GGCATCTTTGACGACAGCTTCGAGATCCCCACGTTCTCTCC GGCATCTTTGACGACAGCTTCGATATCCCCACGTTCTCTCC < 41bp 0.854680904856816 0.549770490380853 0.75131977 0.18805161 prediction 0.609820828951926 Functional Loss - RNF126P1 ENSG00000261192 ncRNA_exonic Human transcribed_processed_pseudogene chr17:55123150 chr17:55123153 . . 0 24 hm5C_associated_SNPs_53887 0 0 0 1 0 unknown 0.500231643884181 0.500231643925758 0.50263954 0 hm5C_site_49239 DeepMRMD:0.50263954;iRNA_m5C:0 49240 chr7 142423636 142423636 1 + G T LUAD 142423633 + 142423613 142423653 41 AGAGGAATTTCCCCCTGATCCTGGAGTCGCCCAGCCCCAAC AGAGGAATTTCCCCCTGATCCTGTAGTCGCCCAGCCCCAAC < 41bp 0.846418334166773 0.541523236652891 0.5253846 0.25778878 prediction 0.609790195027764 Functional Loss - MTRNR2L6;PRSS1 ENSG00000211752 CDS Human TR_V_gene chr7:142423633 chr7:142423636 stopgain . 0 24 hm5C_associated_SNPs_53888 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0.0507692 0 hm5C_site_49240 DeepMRMD:0.0507692;iRNA_m5C:0 49241 chr6 35754809 35754809 1 + G T SARC 35754807 + 35754787 35754827 41 TCTTGCATCCGGAACCAGGACTGCGAGACTGGCTGCTGCCA TCTTGCATCCGGAACCAGGACTTCGAGACTGGCTGCTGCCA < 41bp 0.834834803962765 0.529940253483021 0.2671219 0.14471152 prediction 0.609789100959488 Functional Loss - CLPSL1 ENSG00000204140 CDS Human protein_coding chr6:35754807 chr6:35754809 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_53889 0 0 0 0 2 unknown 0.500231636316884 0.500231643922019 0 0 hm5C_site_49241 DeepMRMD:0;iRNA_m5C:0 49242 chr8 26441374 26441374 1 + G T LUAD 26441372 + 26441352 26441392 41 AAGACCATCGAGGCCCACTCCCGGATGGTGATCCCCGGAGG AAGACCATCGAGGCCCACTCCCTGATGGTGATCCCCGGAGG < 41bp 0.843817798637324 0.538929191001988 0.90340185 0.22443652 prediction 0.609777215270672 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26441372 chr8:26441374 nonsynonymous SNV 0.985 2 23 hm5C_associated_SNPs_53890 0 0 1 0 1 Nucleus 0.500231707831536 0.500231638994353 0.8068037 1.37674365907614e-07 hm5C_site_49242 DeepMRMD:0.8068037;iRNA_m5C:1.37674365907614e-07 49243 chr8 54792025 54792025 1 + G T LUAD 54792022 + 54792002 54792042 41 CGAGGGGGCACGAGGAGCTGCCGGGCCGCCTCTCGCTCCTG CGAGGGGGCACGAGGAGCTGCCGTGCCGCCTCTCGCTCCTG < 41bp 0.804881766294817 0.431131432311478 0.92486995 0.8320899 prediction 0.609763532589634 Functional Loss - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54792022 chr8:54792025 nonsynonymous SNV 0.168 2 24 hm5C_associated_SNPs_53891 0 0 0 0 0 chromatin 0.500231643860475 0.500231631722027 0.1855601 2.42768947167349e-08 hm5C_site_49243 DeepMRMD:0.1855601;iRNA_m5C:2.42768947167349e-08 49244 chr19 46198725 46198725 1 + G T LUAD 46198723 + 46198703 46198743 41 GGCCACGCTGCGGTCCCTGACAGCAGGTTGGCACGTGGAGC GGCCACGCTGCGGTCCCTGACATCAGGTTGGCACGTGGAGC < 41bp 0.843498799362797 0.538624494215781 0.36361998 0.15250933 prediction 0.609748610294033 Functional Loss - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46198723 chr19:46198725 nonsynonymous SNV 0.628 1 23 hm5C_associated_SNPs_53892 0 0 1 0 1 chromatin 0.500231643920699 0.500225389294281 0 1.25092528351356e-05 hm5C_site_49244 DeepMRMD:0;iRNA_m5C:1.25092528351356e-05 49245 chr15 66994822 66994822 1 + G T rs558891070 66994820 + 66994800 66994840 41 GCGCACGAAGCGTCCGAGGGCAGCGTGGGGCGGGCTGCGAC GCGCACGAAGCGTCCGAGGGCATCGTGGGGCGGGCTGCGAC < 41bp 0.826242105863269 0.521380549053902 0.8811549 0.83884794 prediction 0.609723113618734 Functional Loss - SMAD6 ENSG00000137834 UTR5 Human protein_coding chr15:66994820 chr15:66994822 . . 0 23 hm5C_associated_SNPs_53893 0 0 1 0 0 Cytosol 0.500231651976247 0.500231664872932 0.08461392 0 hm5C_site_49245 DeepMRMD:0.08461392;iRNA_m5C:0 49246 chr11 71847147 71847147 1 + A C LIHC 71847143 + 71847123 71847163 41 ACCACAAGACACAGCCCAGCCCCGAGGACGAGCTGTATGGC ACCACAAGACACAGCCCAGCCCCGCGGACGAGCTGTATGGC < 41bp 0.804858112865461 0.393015579332346 0.19188455 0.21644142 prediction 0.609716225730922 Functional Loss - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71847143 chr11:71847147 nonsynonymous SNV 0.028 3 25 hm5C_associated_SNPs_53894 0 0 0 0 1 Endoplasmic reticulum 0.500229523017247 0.50023167741819 0 0 hm5C_site_49246 DeepMRMD:0;iRNA_m5C:0 49247 chrX 69644935 69644935 1 + G T UCEC 69644933 + 69644913 69644953 41 CCCAGAGAGAGGATGCAAACCAGCAAGGTGGAGTAGGGATG CCCAGAGAGAGGATGCAAACCATCAAGGTGGAGTAGGGATG < 41bp 0.804848552528605 0.490786720258519 0.0862236 0.047833085 prediction 0.60969710505721 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69644933 chrX:69644935 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53895 0 0 0 0 1 exosome 0.500231643929104 0.500231643921093 0 1.60218505129706e-11 hm5C_site_49247 DeepMRMD:0;iRNA_m5C:1.60218505129706e-11 49248 chr8 66619324 66619324 1 + G T BLCA 66619322 + 66619302 66619342 41 CGCCCCTGCCTCCCCCTGCACTGGGGCTCCACCAAAGTACA CGCCCCTGCCTCCCCCTGCACTTGGGCTCCACCAAAGTACA < 41bp 0.851033875369892 0.546188806344429 0.11417198 0.019317895 prediction 0.609690138050926 Functional Loss - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66619322 chr8:66619324 synonymous SNV . 0 23 hm5C_associated_SNPs_53896 0 0 1 0 1 Cytosol 0.500231643921084 0.500231643921085 0 0 hm5C_site_49248 DeepMRMD:0;iRNA_m5C:0 49249 chr19 3613108 3613108 1 + C A STAD 3613110 - 3613090 3613130 41 TGGACGCGCACGTGCTGGAACCGGATGAGGACCTGCAGCGC TGGACGCGCACGTGCTGGAACCTGATGAGGACCTGCAGCGC < 41bp 0.804843839227186 0.49501851251751 0.85800534 0.46771568 prediction 0.609687678454373 Functional Loss - CACTIN ENSG00000105298 CDS Human protein_coding chr19:3613110 chr19:3613108 synonymous SNV . 0 23 hm5C_associated_SNPs_53897 0 0 0 0 0 Ribosome 0.50023163981224 0.500231660239657 0.71601068 0 hm5C_site_49249 DeepMRMD:0.71601068;iRNA_m5C:0 49250 chr17 78082517 78082517 1 + G T LUAD 78082514 + 78082494 78082534 41 AGGACGTCCAGTGGAACGACCTGGACTACATGGACTCCCGG AGGACGTCCAGTGGAACGACCTGTACTACATGGACTCCCGG < 41bp 0.804842421020674 0.420355337855361 0.31587115 0.15717667 prediction 0.609684842041348 Functional Loss - GAA ENSG00000171298 CDS Human protein_coding chr17:78082514 chr17:78082517 nonsynonymous SNV 0.903 5 24 hm5C_associated_SNPs_53898 0 0 1 0 1 Endoplasmic reticulum 0.500231645115043 0.500231643921092 0 2.38790187623295e-09 hm5C_site_49250 DeepMRMD:0;iRNA_m5C:2.38790187623295e-09 49251 chr15 63578791 63578791 1 + G T GBM 63578789 + 63578769 63578809 41 AGGTTTGAAGAGTATAAACCCAGGTGAGACAGCACCCTCTA AGGTTTGAAGAGTATAAACCCATGTGAGACAGCACCCTCTA < 41bp 0.829044924287225 0.524214553297407 0.94856 0.4268977 prediction 0.609660741979635 Functional Loss - APH1B ENSG00000138613 CDS Human protein_coding chr15:63578789 chr15:63578791 nonsynonymous SNV 0.905 2 23 hm5C_associated_SNPs_53899 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643813541 0.89712 2.15101714218235e-10 hm5C_site_49251 DeepMRMD:0.89712;iRNA_m5C:2.15101714218235e-10 49252 chr3 16237290 16237290 1 + A C COAD 16237286 + 16237266 16237306 41 GGTGTCTGCAGCAGCACCCTCAGGACAGCCTGCCCACAGCC GGTGTCTGCAGCAGCACCCTCAGGCCAGCCTGCCCACAGCC < 41bp 0.888189839546217 0.583369364170352 0.9242533 0.91649866 prediction 0.609640950751729 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16237286 chr3:16237290 nonsynonymous SNV 0.056 0 25 hm5C_associated_SNPs_53900 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.0155092800000001 0 hm5C_site_49252 DeepMRMD:0.0155092800000001;iRNA_m5C:0 49253 chr7 44152461 44152461 1 + G T SARC 44152459 + 44152439 44152479 41 TGCCAAGCCCAGGACTACACCGGCGGCATGGGCATCGTCAA TGCCAAGCCCAGGACTACACCGTCGGCATGGGCATCGTCAA < 41bp 0.827907555885105 0.523088279521078 0.9087425 0.18416429 prediction 0.609638552728054 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44152459 chr7:44152461 nonsynonymous SNV 0.968 1 23 hm5C_associated_SNPs_53901 0 0 0 0 1 Endoplasmic reticulum 0.500231643916512 0.500231644232928 0.817485 0 hm5C_site_49253 DeepMRMD:0.817485;iRNA_m5C:0 49254 chr10 98744424 98744424 1 + G T COAD 98744422 + 98744402 98744442 41 TCAGAGTAAACGCAAGAGAACAGAAGGCAGCAGCCCTCCAG TCAGAGTAAACGCAAGAGAACATAAGGCAGCAGCCCTCCAG < 41bp 0.804807105567679 0.489245620591152 0.35868096 0.16854948 prediction 0.609614211135357 Functional Loss - LCOR ENSG00000155640 CDS Human other chr10:98744422 chr10:98744424 stopgain 0.763 0 23 hm5C_associated_SNPs_53902 0 0 1 0 0 Ribosome 0.500231643921076 0.500231643921092 0 0 hm5C_site_49254 DeepMRMD:0;iRNA_m5C:0 49255 chr10 43869231 43869231 1 + G T UCEC 43869229 + 43869209 43869249 41 CCTGGCCCTTCTCCTACTGGCAGGTGAGTCCTCCCAGTCTC CCTGGCCCTTCTCCTACTGGCATGTGAGTCCTCCCAGTCTC < 41bp 0.827053773361596 0.522256769395391 0.89842105 0.45898417 prediction 0.609594007932411 Functional Loss - FXYD4 ENSG00000150201 CDS Human protein_coding chr10:43869229 chr10:43869231 nonsynonymous SNV 0.977 2 23 hm5C_associated_SNPs_53903 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.7968421 0 hm5C_site_49255 DeepMRMD:0.7968421;iRNA_m5C:0 49256 chr17 34172014 34172014 1 + G T KIRP 34172011 + 34171991 34172031 41 GTGGGGGCTACGGAGGAGACCGAGGTGGCTATGGAGGCAAA GTGGGGGCTACGGAGGAGACCGATGTGGCTATGGAGGCAAA < 41bp 0.876632068153188 0.571839724898413 0.9065416 0.21234015 prediction 0.609584686509549 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34172011 chr17:34172014 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53904 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921095 0.8130832 0 hm5C_site_49256 DeepMRMD:0.8130832;iRNA_m5C:0 49257 chr14 70235955 70235955 1 + G T UCEC 70235952 + 70235932 70235972 41 TATAGTTGAGAATTTATCCTCAAGAGTCAGCTGGCAGGTTT TATAGTTGAGAATTTATCCTCAATAGTCAGCTGGCAGGTTT < 41bp 0.804762340043983 0.452269899208342 0.4202258 0.061175227 prediction 0.609524680087967 Functional Loss - SRSF5 ENSG00000100650 CDS Human protein_coding chr14:70235952 chr14:70235955 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53905 0 0 1 1 2 Nucleus 0.500232173203797 0.500231643714913 0 1.05897776792041e-06 hm5C_site_49257 DeepMRMD:0;iRNA_m5C:1.05897776792041e-06 49258 chr2 219292775 219292775 1 + G T LGG 219292772 + 219292752 219292792 41 AGGCTGCTGCATGTCAAGGGCAAGAGGAACGTGGTAGCTGG AGGCTGCTGCATGTCAAGGGCAATAGGAACGTGGTAGCTGG < 41bp 0.804758201475623 0.429049599708573 0.7476916 0.43334895 prediction 0.609516402951245 Functional Loss - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219292772 chr2:219292775 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53906 0 0 1 0 2 Nucleus 0.500231643921093 0.500231643921093 0.4953832 0 hm5C_site_49258 DeepMRMD:0.4953832;iRNA_m5C:0 HIV-1 susceptibility 49259 chr1 92495728 92495728 1 + G T SARC 92495726 + 92495706 92495746 41 GTCTACTGCTACTGCGGGCTCTGCGCCTCCATCCACCTGCT GTCTACTGCTACTGCGGGCTCTTCGCCTCCATCCACCTGCT < 41bp 0.826711111606331 0.521954503590731 0.054116637 0.010607868 prediction 0.6095132160312 Functional Loss - EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92495726 chr1:92495728 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_53907 0 0 1 0 0 exosome 0.500231649500935 0.500231643978711 0 1.10444493550688e-08 hm5C_site_49259 DeepMRMD:0;iRNA_m5C:1.10444493550688e-08 49260 chr19 13059039 13059039 1 + G T SARC 13059037 + 13059017 13059057 41 ACCCCCAGAGGCCTCACCCACAGCTGCCCCAGAGTCCTCTA ACCCCCAGAGGCCTCACCCACATCTGCCCCAGAGTCCTCTA < 41bp 0.804744780367067 0.461273648148434 0.7555541 0.10031518 prediction 0.609489560734135 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059037 chr19:13059039 nonsynonymous SNV 0.906 0 23 hm5C_associated_SNPs_53908 0 0 0 0 1 Ribosome 0.500231643921847 0.500231643997379 0.5111082 0 hm5C_site_49260 DeepMRMD:0.5111082;iRNA_m5C:0 49261 chr19 58118185 58118185 1 + G T LUAD 58118182 + 58118162 58118202 41 TCAACACCAAAGAGTTCACACTGGAGAAAGGCCTTATGAGT TCAACACCAAAGAGTTCACACTGTAGAAAGGCCTTATGAGT < 41bp 0.804735909817737 0.436204319677646 0.08641249 0.01840815 prediction 0.609471819635475 Functional Loss - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58118182 chr19:58118185 nonsynonymous SNV 0.022 3 24 hm5C_associated_SNPs_53909 0 0 0 3 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_49261 DeepMRMD:0;iRNA_m5C:0 49262 chr2 131520476 131520476 1 + G T CESC 131520474 + 131520454 131520494 41 AGAGCCCAACCCAGGCTGCTCAGGGCCTGGAGAGCAAGGTT AGAGCCCAACCCAGGCTGCTCATGGCCTGGAGAGCAAGGTT < 41bp 0.854514649148311 0.54978446057535 0.9133255 0.6836223 prediction 0.609460377145922 Functional Loss - AMER3 ENSG00000178171 CDS Human protein_coding chr2:131520474 chr2:131520476 nonsynonymous SNV 0.003 2 23 hm5C_associated_SNPs_53910 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921052 0.4594064 8.14903700074865e-14 hm5C_site_49262 DeepMRMD:0.4594064;iRNA_m5C:8.14903700074865e-14 49263 chr12 2910444 2910444 1 + G T PRAD 2910442 + 2910422 2910462 41 CCCAGCTGGCTGTGTGCCAGCAGCGGATCCGAAGGCAGCTT CCCAGCTGGCTGTGTGCCAGCATCGGATCCGAAGGCAGCTT < 41bp 0.839936671165039 0.535207745912373 0.8805414 0.287709 prediction 0.609457850505333 Functional Loss - FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2910442 chr12:2910444 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_53911 0 0 1 0 1 Ribosome 0.500231643921139 0.500231646876851 0.7610828 0 hm5C_site_49263 DeepMRMD:0.7610828;iRNA_m5C:0 49264 chr6 50791125 50791125 1 + G T UCEC 50791123 + 50791103 50791143 41 CCTCTCTCCGCTCCCAGGACCGGCACGATGGTGTCCCGAGC CCTCTCTCCGCTCCCAGGACCGTCACGATGGTGTCCCGAGC < 41bp 0.804727922399628 0.473884123979432 0.6229036 0.21021667 prediction 0.609455844799257 Functional Loss - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50791123 chr6:50791125 synonymous SNV . 0 23 hm5C_associated_SNPs_53912 0 0 0 0 1 Endoplasmic reticulum 0.500236652280167 0.500231646500407 0.2458072 1.00115595189632e-05 hm5C_site_49264 DeepMRMD:0.2458072;iRNA_m5C:1.00115595189632e-05 49265 chr8 22857249 22857249 1 + G T rs530278522 22857246 + 22857226 22857266 41 GCCTTCGCCGCGGGCCCGGGCGCGTAGCGGCGGCGGCCTCG GCCTTCGCCGCGGGCCCGGGCGCTTAGCGGCGGCGGCCTCG < 41bp 0.80472415361505 0.453025229469783 0.9096942 0.6356711 prediction 0.6094483072301 Functional Loss - RHOBTB2 ENSG00000134020 CDS Human protein_coding chr8:22857246 chr8:22857249 stopgain 0.123 0 24 hm5C_associated_SNPs_53913 0 0 0 0 0 cytosol 0.500231643918785 0.500231643921025 0.5480462 0 hm5C_site_49265 DeepMRMD:0.5480462;iRNA_m5C:0 49266 chr11 61545865 61545865 1 + G T GBM 61545863 + 61545843 61545883 41 TGCCCCCAGGTGTCATCGCTCAGGAGGTGAAGGAGATCTTG TGCCCCCAGGTGTCATCGCTCATGAGGTGAAGGAGATCTTG < 41bp 0.847443848252669 0.542724343620832 0.93242085 0.3984114 prediction 0.609439009263675 Functional Loss - MYRF ENSG00000124920 CDS Human protein_coding chr11:61545863 chr11:61545865 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_53914 0 0 1 0 2 chromatin 0.500231585835525 0.500231649633994 0.8648417 0 hm5C_site_49266 DeepMRMD:0.8648417;iRNA_m5C:0 49267 chr11 67220087 67220087 1 + C A HNSC 67220090 - 67220070 67220110 41 GTGGCTGGGACACGGTCTTCCTGGTGGCCCTGCTGCTCCTT GTGGCTGGGACACGGTCTTCCTGTTGGCCCTGCTGCTCCTT < 41bp 0.804712536624404 0.43942362142842 0.41510853 0.15306544 prediction 0.609425073248807 Functional Loss - GPR152 ENSG00000175514 CDS Human protein_coding chr11:67220090 chr11:67220087 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_53915 0 0 0 0 0 exosome 0.500231643921154 0.500231643921092 0 1.23012711128467e-13 hm5C_site_49267 DeepMRMD:0;iRNA_m5C:1.23012711128467e-13 49268 chr1 38260262 38260262 1 + G T KIRC 38260259 + 38260239 38260279 41 ATGGTGCCGCACTGGGACCCCAAGATCTCGGCCAGCTACCC ATGGTGCCGCACTGGGACCCCAATATCTCGGCCAGCTACCC < 41bp 0.877941133356996 0.573244028037484 0.23788404 0.116850615 prediction 0.609394210639023 Functional Loss - MANEAL ENSG00000185090 CDS Human protein_coding chr1:38260259 chr1:38260262 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53916 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_49268 DeepMRMD:0;iRNA_m5C:0 49269 chr2 27282252 27282252 1 + G T UCEC 27282250 + 27282230 27282270 41 AGTACCCAAAAGGTCACCCACCGGGTGCTGGGCCCCGTCAG AGTACCCAAAAGGTCACCCACCTGGTGCTGGGCCCCGTCAG < 41bp 0.841075316422693 0.536378260459493 0.90747094 0.37358496 prediction 0.609394111926401 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27282250 chr2:27282252 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_53917 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643920934 0.81494188 3.1774582964772e-13 hm5C_site_49269 DeepMRMD:0.81494188;iRNA_m5C:3.1774582964772e-13 49270 chr20 43566815 43566815 1 + G T UCEC 43566813 + 43566793 43566833 41 GTTGCTCATGCTGGAGTCTCCAGAATCCCTCCATGCCAAGG GTTGCTCATGCTGGAGTCTCCATAATCCCTCCATGCCAAGG < 41bp 0.804693299025028 0.475517137233397 0.5000251 0.04267952 prediction 0.609386598050057 Functional Loss - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43566813 chr20:43566815 stopgain 0.998 1 23 hm5C_associated_SNPs_53918 0 0 1 0 1 chromatin 0.500231399498767 0.500231638223631 5.02000000000002e-05 0 hm5C_site_49270 DeepMRMD:5.02000000000002e-05;iRNA_m5C:0 49271 chr17 54912211 54912211 1 + G T STAD 54912209 + 54912189 54912229 41 GCCCTCCGAGGGCCTGTTTGCGGACGGGCACCTGATCTTGT GCCCTCCGAGGGCCTGTTTGCGTACGGGCACCTGATCTTGT < 41bp 0.804689774377638 0.480474366430148 0.8884937 0.6640027 prediction 0.609379548755276 Functional Loss - DGKE ENSG00000153933 CDS Human protein_coding chr17:54912209 chr17:54912211 nonsynonymous SNV 0.036 3 23 hm5C_associated_SNPs_53919 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643433903 0.448982 9.74379021911886e-10 hm5C_site_49271 DeepMRMD:0.448982;iRNA_m5C:9.74379021911886e-10 49272 chr11 10615730 10615730 1 + G T COAD 10615727 + 10615707 10615747 41 GGGACATGGACCGTGCCGTGCGAGGGACCCCATCTTCTGCA GGGACATGGACCGTGCCGTGCGATGGACCCCATCTTCTGCA < 41bp 0.804681208492859 0.44274964960003 0.92597973 0.5250273 prediction 0.609362416985719 Functional Loss - MRVI1 ENSG00000072952 CDS Human protein_coding chr11:10615727 chr11:10615730 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_53920 0 0 0 0 2 Nucleus 0.50023164402135 0.500232096167845 0.80190486 0 hm5C_site_49272 DeepMRMD:0.80190486;iRNA_m5C:0 49273 chr6 117890851 117890851 1 + C A LUAD 117890853 - 117890833 117890873 41 CCTCATCTCTGAGATCCATCCGGGGCAACCTGCTGATAGAT CCTCATCTCTGAGATCCATCCGTGGCAACCTGCTGATAGAT < 41bp 0.831758333646301 0.527079203212058 0.946409 0.35068232 prediction 0.609358260868485 Functional Loss - GOPC ENSG00000047932 CDS Human protein_coding chr6:117890853 chr6:117890851 nonsynonymous SNV 0.600 4 23 hm5C_associated_SNPs_53921 0 0 1 0 0 Ribosome 0.500231647164229 0.500231638649865 0.892818 1.70287268730362e-08 hm5C_site_49273 DeepMRMD:0.892818;iRNA_m5C:1.70287268730362e-08 49274 chr1 152648643 152648643 1 + G T UCEC 152648641 + 152648621 152648661 41 GTCTCTTCTTGCTGTGGTCCCAGCTCTGGGAGCTGCTGTGG GTCTCTTCTTGCTGTGGTCCCATCTCTGGGAGCTGCTGTGG < 41bp 0.804673846494525 0.482994558189004 0.2739722 0.048424006 prediction 0.609347692989049 Functional Loss - LCE2C ENSG00000187180 CDS Human protein_coding chr1:152648641 chr1:152648643 nonsynonymous SNV 0.297 0 23 hm5C_associated_SNPs_53922 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_49274 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 49275 chr14 39583561 39583561 1 + G T BLCA 39583559 + 39583539 39583579 41 AACCATGGCGTGGGTACCAGCGGAGTCCGCAGTGGAAGAGT AACCATGGCGTGGGTACCAGCGTAGTCCGCAGTGGAAGAGT < 41bp 0.804671026354682 0.473802831297683 0.8954446 0.43819833 prediction 0.609342052709364 Functional Loss - GEMIN2 ENSG00000092208 CDS Human protein_coding chr14:39583559 chr14:39583561 stopgain 0.329 1 23 hm5C_associated_SNPs_53923 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.7908892 0 hm5C_site_49275 DeepMRMD:0.7908892;iRNA_m5C:0 49276 chrX 48678561 48678561 1 + G T HNSC 48678558 + 48678538 48678578 41 CAGCTGGCTTTGATGCTGCACGGGGGGATCCGCTGGGGGGC CAGCTGGCTTTGATGCTGCACGGTGGGATCCGCTGGGGGGC < 41bp 0.884056992571582 0.579388162789867 0.9128598 0.8551965 prediction 0.60933765956343 Functional Loss - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48678558 chrX:48678561 nonsynonymous SNV 0.989 4 24 hm5C_associated_SNPs_53924 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921093 0.1153266 0 hm5C_site_49276 DeepMRMD:0.1153266;iRNA_m5C:0 49277 chr2 27016114 27016114 1 + G T LUAD 27016111 + 27016091 27016131 41 CCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTGA CCAAAGGATGTGCAACTGGCCCGTAGGATCCGGGGCCTTGA < 41bp 0.876615240565821 0.571954869564062 0.46009743 0.050269514 prediction 0.609320742003517 Functional Loss - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016111 chr2:27016114 synonymous SNV . 0 24 hm5C_associated_SNPs_53925 0 0 1 1 1 Ribosome 0.500231643921288 0.500231643921092 0 3.91686683087755e-13 hm5C_site_49277 DeepMRMD:0;iRNA_m5C:3.91686683087755e-13 49278 chr5 169506025 169506025 1 + G T LUAD 169506022 + 169506002 169506042 41 CCAAGACGCCGAGAGTGGAGCAGGAGGAACCGATCTCCCCG CCAAGACGCCGAGAGTGGAGCAGTAGGAACCGATCTCCCCG < 41bp 0.861583704980888 0.556945110597751 0.89749104 0.6533425 prediction 0.609277188766274 Functional Loss - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169506022 chr5:169506025 stopgain 0.638 0 24 hm5C_associated_SNPs_53926 0 0 1 0 1 Cytosol 0.500231644357066 0.500231643922072 0.48829708 8.69988525664667e-10 hm5C_site_49278 DeepMRMD:0.48829708;iRNA_m5C:8.69988525664667e-10 49279 chr15 52497116 52497116 1 + T G OV 52497120 - 52497100 52497140 41 TCTTGATCGGGGCGGTCACGCTGAACAGCCTCTTCCTGCGC TCTTGATCGGGGCGGTCACGCTGACCAGCCTCTTCCTGCGC < 41bp 0.804630359294864 0.412275630373796 0.23107368 0.22828957 prediction 0.609260718589728 Functional Loss - MYO5C ENSG00000128833 CDS Human protein_coding chr15:52497120 chr15:52497116 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_53927 0 0 1 0 1 Nucleus 0.500237452235816 0.500231654273232 0 1.15959251685283e-05 hm5C_site_49279 DeepMRMD:0;iRNA_m5C:1.15959251685283e-05 49280 chr1 248059095 248059095 1 + G T KIRC 248059093 + 248059073 248059113 41 TCCTCGCCCACCTTTCCTTCCTGGACCTCAGTTTCACCACC TCCTCGCCCACCTTTCCTTCCTTGACCTCAGTTTCACCACC < 41bp 0.80462510066511 0.475683523675815 0.20720541 0.082071215 prediction 0.60925020133022 Functional Loss - OR2W3 ENSG00000238243 CDS Human protein_coding chr1:248059093 chr1:248059095 synonymous SNV . 0 23 hm5C_associated_SNPs_53928 0 0 1 0 0 exosome 0.500231659393119 0.500231644129325 0 3.05275875689404e-08 hm5C_site_49280 DeepMRMD:0;iRNA_m5C:3.05275875689404e-08 49281 chr8 22452357 22452357 1 + G T rs11782130 22452355 + 22452335 22452375 41 GGGAGGCCTGAGGAGCCCTCCTGGAGCTCAGGAGGCCGAGG GGGAGGCCTGAGGAGCCCTCCTTGAGCTCAGGAGGCCGAGG < 41bp 0.80462166472952 0.496232089266687 0.5139099 0.11438036 prediction 0.60924332945904 Functional Loss - PDLIM2 ENSG00000120913 UTR3 Human protein_coding chr8:22452355 chr8:22452357 . . 0 23 hm5C_associated_SNPs_53929 0 0 0 0 0 Nucleus 0.500231651726405 0.50023164414652 0.0278198000000001 1.51597701059103e-08 hm5C_site_49281 DeepMRMD:0.0278198000000001;iRNA_m5C:1.51597701059103e-08 49282 chr19 49377723 49377723 1 + G T UCEC 49377720 + 49377700 49377740 41 GACAGTGATACAGGATCAGCCGAGGATGAAAGAGAAGCTGA GACAGTGATACAGGATCAGCCGATGATGAAAGAGAAGCTGA < 41bp 0.804621077621438 0.431517908864689 0.5421124 0.43691522 prediction 0.609242155242876 Functional Loss - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49377720 chr19:49377723 nonsynonymous SNV 0.559 2 24 hm5C_associated_SNPs_53930 0 0 1 0 0 Cytosol 0.500231643921061 0.500230252789273 0.0842248000000001 2.78226357708355e-06 hm5C_site_49282 DeepMRMD:0.0842248000000001;iRNA_m5C:2.78226357708355e-06 49283 chr12 58120822 58120822 1 + G T SARC 58120820 + 58120800 58120840 41 GCCAGGTGGAGTGGGGAGCGCAGCTGTGGGTCCTCTACGCT GCCAGGTGGAGTGGGGAGCGCATCTGTGGGTCCTCTACGCT < 41bp 0.810238583262893 0.505630458878559 0.53921425 0.2951566 prediction 0.609216248768668 Functional Loss - AGAP2 ENSG00000135439;ENSG00000255737 CDS Human other chr12:58120820 chr12:58120822 nonsynonymous SNV 0.986 1 23 hm5C_associated_SNPs_53931 0 0 0 0 1 exosome 0.500231643929085 0.500231643921655 0.0784285 1.48607792738176e-11 hm5C_site_49283 DeepMRMD:0.0784285;iRNA_m5C:1.48607792738176e-11 49284 chr6 35289090 35289090 1 + G T UCEC 35289088 + 35289068 35289108 41 AACAGGACCCCCTCGCCCAACAGCAATGAGCAGCAGAAGTC AACAGGACCCCCTCGCCCAACATCAATGAGCAGCAGAAGTC < 41bp 0.810843943419758 0.506246402010845 0.29032558 0.16945195 prediction 0.609195082817825 Functional Loss - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35289088 chr6:35289090 nonsynonymous SNV 0.692 2 23 hm5C_associated_SNPs_53932 0 0 0 0 0 Ribosome 0.500231641466328 0.500231386489214 0 5.099542279563e-07 hm5C_site_49284 DeepMRMD:0;iRNA_m5C:5.099542279563e-07 49285 chr3 186450368 186450368 1 + G T HNSC 186450365 + 186450345 186450385 41 TACCCACCAACAGCCCAGAGCTGGAGGAGACACTGACTCAC TACCCACCAACAGCCCAGAGCTGTAGGAGACACTGACTCAC < 41bp 0.88743435782586 0.582858141704975 0.58001536 0.19360092 prediction 0.60915243224177 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186450365 chr3:186450368 stopgain 0.742 0 24 hm5C_associated_SNPs_53933 0 0 0 0 2 Cytosol 0.500231643921075 0.500231643920629 0.16003072 8.93063401008476e-13 hm5C_site_49285 DeepMRMD:0.16003072;iRNA_m5C:8.93063401008476e-13 49286 chr6 50682838 50682838 1 + G T BLCA 50682835 + 50682815 50682855 41 CCTCTTCCTTCCAGATACGTCACGACGGATCAAACAGCTAC CCTCTTCCTTCCAGATACGTCACTACGGATCAAACAGCTAC < 41bp 0.804569130052907 0.44819128098701 0.09987596 0.05512911 prediction 0.609138260105813 Functional Loss - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50682835 chr6:50682838 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53934 0 0 0 1 1 unknown 0.500231564542275 0.500231643886086 0 0 hm5C_site_49286 DeepMRMD:0;iRNA_m5C:0 49287 chrX 152113888 152113888 1 + G T CESC 152113885 + 152113865 152113905 41 GCAGGAGAGGCCTGGAGCTCCAAGAGGTGGCCAAGGAGACC GCAGGAGAGGCCTGGAGCTCCAATAGGTGGCCAAGGAGACC < 41bp 0.873262433474823 0.568697417095642 0.6602597 0.27317107 prediction 0.609130032758362 Functional Loss - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152113885 chrX:152113888 nonsynonymous SNV 0.006 0 24 hm5C_associated_SNPs_53935 0 0 0 0 1 chromatin 0.500231631017733 0.500231638678951 0.3205194 0 hm5C_site_49287 DeepMRMD:0.3205194;iRNA_m5C:0 49288 chr9 91616924 91616924 1 + G T COAD 91616922 + 91616902 91616942 41 TTCCTCATTGATGTGGCCTGCAGGGTGCAGGCGTGCCCCAT TTCCTCATTGATGTGGCCTGCATGGTGCAGGCGTGCCCCAT < 41bp 0.842638434113486 0.538087119073229 0.9113294 0.29474565 prediction 0.609102630080516 Functional Loss - S1PR3 ENSG00000213694 CDS Human protein_coding chr9:91616922 chr9:91616924 nonsynonymous SNV 0.963 1 23 hm5C_associated_SNPs_53936 0 0 0 0 0 cytosol 0.500231643921091 0.500231640157167 0.8226588 7.52784701241183e-09 hm5C_site_49288 DeepMRMD:0.8226588;iRNA_m5C:7.52784701241183e-09 49289 chr9 129643116 129643116 1 + G T COAD 129643113 + 129643093 129643133 41 ATGTGTACGTGGAACAGAAACTAGAAAATGACGCATCGGCC ATGTGTACGTGGAACAGAAACTATAAAATGACGCATCGGCC < 41bp 0.804535859306406 0.450800440782741 0.39365926 0.20994198 prediction 0.609071718612811 Functional Loss - ZBTB34 ENSG00000177125 CDS Human protein_coding chr9:129643113 chr9:129643116 stopgain 0.999 1 24 hm5C_associated_SNPs_53937 0 0 1 0 0 nucleoplasm 0.500231643921035 0.500231643919789 0 2.49222864567855e-12 hm5C_site_49289 DeepMRMD:0;iRNA_m5C:2.49222864567855e-12 49290 chr9 131348125 131348125 1 + G T BLCA 131348122 + 131348102 131348142 41 CTTCCCAGCGTCGGCAGGACCTGGAGGACTCTCTGCAGGCC CTTCCCAGCGTCGGCAGGACCTGTAGGACTCTCTGCAGGCC < 41bp 0.804534520155431 0.462822549835788 0.42144138 0.11404383 prediction 0.609069040310862 Functional Loss - SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131348122 chr9:131348125 stopgain 0.999 1 24 hm5C_associated_SNPs_53938 0 0 1 0 1 Nucleus 0.500231643921093 0.500231643921092 0 8.88178419700125e-16 hm5C_site_49290 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 49291 chr5 140574080 140574080 1 + G T rs562383569 140574077 + 140574057 140574097 41 CAAGGACAATGGCGAGCCTCCTCGCTCGGCCACCGCCACGC CAAGGACAATGGCGAGCCTCCTCTCTCGGCCACCGCCACGC < 41bp 0.804529750083988 0.432927602047364 0.23971736 0.058294535 prediction 0.609059500167976 Functional Loss - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140574077 chr5:140574080 nonsynonymous SNV 0.024 0 24 hm5C_associated_SNPs_53939 0 0 0 0 0 exosome 0.500231650188183 0.500231637421083 0 2.55342011978854e-08 hm5C_site_49291 DeepMRMD:0;iRNA_m5C:2.55342011978854e-08 49292 chr1 110584264 110584264 1 + G T BRCA 110584261 + 110584241 110584281 41 GGCAGACCTTCAGAGCCGAGCTGGGTAGGACCCTGGGGATC GGCAGACCTTCAGAGCCGAGCTGTGTAGGACCCTGGGGATC < 41bp 0.885700325073446 0.581171430609301 0.6475788 0.24513832 prediction 0.609057788928291 Functional Loss - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110584261 chr1:110584264 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_53940 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921094 0.2951576 0 hm5C_site_49292 DeepMRMD:0.2951576;iRNA_m5C:0 49293 chr14 76948393 76948393 1 + G T UCEC 76948391 + 76948371 76948411 41 ATCGAGTGCGTGGAGGCCGTCAGAAATACAAGCGACGGCTG ATCGAGTGCGTGGAGGCCGTCATAAATACAAGCGACGGCTG < 41bp 0.804522270936298 0.467746973210432 0.40796053 0.051314384 prediction 0.609044541872596 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76948391 chr14:76948393 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_53941 0 0 1 0 2 Nucleus 0.500231644069618 0.500231717154677 0 0 hm5C_site_49293 DeepMRMD:0;iRNA_m5C:0 49294 chr22 25598726 25598726 1 + A C STAD 25598722 + 25598702 25598742 41 CCAGCCTGACCGACAGCCTGCTGGAGAAGGTGGGCTCCATC CCAGCCTGACCGACAGCCTGCTGGCGAAGGTGGGCTCCATC < 41bp 0.896198322135009 0.591680322729885 0.83254755 0.7023457 prediction 0.609035998810247 Functional Loss - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598722 chr22:25598726 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53942 0 0 0 0 2 exosome 0.500231643920553 0.500231643712408 0.2604037 4.16291667804103e-10 hm5C_site_49294 DeepMRMD:0.2604037;iRNA_m5C:4.16291667804103e-10 49295 chrX 85994808 85994808 1 + G T UCEC 85994805 + 85994785 85994825 41 TCTAGAAGAGAATCATCGTCCTGGGAGCCAGACCTCTTCCC TCTAGAAGAGAATCATCGTCCTGTGAGCCAGACCTCTTCCC < 41bp 0.823623847977223 0.519111075971486 0.72852266 0.20342568 prediction 0.609025544011475 Functional Loss - DACH2 ENSG00000126733 CDS Human protein_coding chrX:85994805 chrX:85994808 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_53943 0 0 0 0 2 exosome 0.500231643919417 0.500231644025544 0.45704532 0 hm5C_site_49295 DeepMRMD:0.45704532;iRNA_m5C:0 49296 chr12 81112714 81112714 1 + G T LUAD 81112712 + 81112692 81112732 41 AGTGGACCGGATCACCTCCTCAGAGCAACCTGGGTTGCCTC AGTGGACCGGATCACCTCCTCATAGCAACCTGGGTTGCCTC < 41bp 0.837795004222589 0.533284373038349 0.9020009 0.2223401 prediction 0.609021262368481 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81112712 chr12:81112714 stopgain 0.980 1 23 hm5C_associated_SNPs_53944 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.8040018 0 hm5C_site_49296 DeepMRMD:0.8040018;iRNA_m5C:0 49297 chr12 54403232 54403232 1 + A C COAD 54403228 + 54403208 54403248 41 CCGGCTTCCAGCACGCTTCGCACCACGTTCAAGACTTCTTC CCGGCTTCCAGCACGCTTCGCACCCCGTTCAAGACTTCTTC < 41bp 0.804499208275835 0.411304531169922 0.09143001 0.07983002 prediction 0.60899841655167 Functional Loss - HOXC8 ENSG00000037965 CDS Human protein_coding chr12:54403228 chr12:54403232 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_53945 0 0 1 0 0 exosome 0.500231635772635 0.500231643922234 0 0 hm5C_site_49297 DeepMRMD:0;iRNA_m5C:0 49298 chrX 11130235 11130235 1 + G T SARC 11130233 + 11130213 11130253 41 AGTTCAGGCCTCAAATGCTTCAGCGTCCCCACCTTCAGGAT AGTTCAGGCCTCAAATGCTTCATCGTCCCCACCTTCAGGAT < 41bp 0.80449108033674 0.466876594653476 0.029274046 0.0018041432 prediction 0.60898216067348 Functional Loss - HCCS ENSG00000004961 CDS Human protein_coding chrX:11130233 chrX:11130235 nonsynonymous SNV 0.799 1 23 hm5C_associated_SNPs_53946 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_49298 DeepMRMD:0;iRNA_m5C:0 49299 chr20 30363769 30363769 1 + G T UCEC 30363766 + 30363746 30363786 41 CGGAAAAAGAATGAAGAATTCAAGAAACTTGCTCTGGCTGG CGGAAAAAGAATGAAGAATTCAATAAACTTGCTCTGGCTGG < 41bp 0.877330479312518 0.572839770291259 0.8902061 0.40254933 prediction 0.608981418042518 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30363766 chr20:30363769 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_53947 0 0 1 0 2 Cytosol 0.500231643921092 0.500231656319017 0.7804122 0 hm5C_site_49299 DeepMRMD:0.7804122;iRNA_m5C:0 49300 chr9 95797692 95797692 1 + G T LUSC 95797689 + 95797669 95797709 41 TGCCGGACCCTGAGGAGAGGCTGGACTCGGGGCATGTGTGG TGCCGGACCCTGAGGAGAGGCTGTACTCGGGGCATGTGTGG < 41bp 0.878862372794989 0.574395286269564 0.60407996 0.20571953 prediction 0.60893417305085 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95797689 chr9:95797692 nonsynonymous SNV 0.004 3 24 hm5C_associated_SNPs_53948 0 0 0 0 1 exosome 0.50023164392116 0.500231643969773 0.20815992 0 hm5C_site_49300 DeepMRMD:0.20815992;iRNA_m5C:0 49301 chr3 101573504 101573504 1 + G T KIRC 101573501 + 101573481 101573521 41 AGATGAATGCACTTCACATGCTGGATATTAAAGAGCACAAT AGATGAATGCACTTCACATGCTGTATATTAAAGAGCACAAT < 41bp 0.87375844175744 0.569293759764455 0.25051373 0.13372415 prediction 0.60892936398597 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101573501 chr3:101573504 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_53949 0 0 1 0 2 Endoplasmic reticulum 0.500233697552279 0.500231692666856 0 4.00977084735743e-06 hm5C_site_49301 DeepMRMD:0;iRNA_m5C:4.00977084735743e-06 49302 chr1 150900289 150900289 1 + G T LUSC 150900287 + 150900267 150900307 41 AACAGGCAGTGGTTGAGGAACTGGGTATCTCTATGGAGGAA AACAGGCAGTGGTTGAGGAACTTGGTATCTCTATGGAGGAA < 41bp 0.817612468183716 0.513156815476985 0.3378074 0.12645203 prediction 0.608911305413462 Functional Loss - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150900287 chr1:150900289 synonymous SNV . 0 23 hm5C_associated_SNPs_53950 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_49302 DeepMRMD:0;iRNA_m5C:0 49303 chr5 140720142 140720142 1 + G T LUAD 140720139 + 140720119 140720159 41 CTTGCAAGTGTGGGTGATAGCGCGGGACAGCGGGAACCCTC CTTGCAAGTGTGGGTGATAGCGCTGGACAGCGGGAACCCTC < 41bp 0.88370925489658 0.579254676446376 0.9355551 0.33293745 prediction 0.608909156900408 Functional Loss - PCDHGA2 ENSG00000081853 CDS Human protein_coding chr5:140720139 chr5:140720142 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_53951 0 0 0 0 0 exosome 0.500231644332881 0.50023164497754 0.8711102 0 hm5C_site_49303 DeepMRMD:0.8711102;iRNA_m5C:0 49304 chr11 57243707 57243707 1 + G T UCEC 57243705 + 57243685 57243725 41 GAACCGCCTGCGGCTGCTCACAGAGCACGTGTTTCGCGGCC GAACCGCCTGCGGCTGCTCACATAGCACGTGTTTCGCGGCC < 41bp 0.825326109127729 0.52087197421017 0.9376004 0.6959951 prediction 0.608908269835119 Functional Loss - RTN4RL2 ENSG00000186907 CDS Human protein_coding chr11:57243705 chr11:57243707 stopgain 1.000 1 23 hm5C_associated_SNPs_53952 0 0 0 0 1 nucleoplasm 0.50023164673813 0.500231837443617 0.4832106 0 hm5C_site_49304 DeepMRMD:0.4832106;iRNA_m5C:0 49305 chr9 35752016 35752016 1 + G T rs570195434 35752014 + 35751994 35752034 41 GTACCAGCGGCGACGTGGGGCAGGGGGTGTCCCCTCTGTGT GTACCAGCGGCGACGTGGGGCATGGGGTGTCCCCTCTGTGT < 41bp 0.8044443420301 0.472711497336396 0.9100909 0.52067596 prediction 0.6088886840602 Functional Loss - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35752014 chr9:35752016 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_53953 0 0 0 0 1 Cytosol 0.500231643921062 0.500231643921092 0.77882988 0 hm5C_site_49305 DeepMRMD:0.77882988;iRNA_m5C:0 49306 chr19 53077398 53077398 1 + G T CESC 53077396 + 53077376 53077416 41 GAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCTTCAGG GAAGAGGAAAGCAAAGGAGTCATGGATGGCTCTTCTTCAGG < 41bp 0.80443523476514 0.474231564844317 0.90811247 0.46615237 prediction 0.60887046953028 Functional Loss - ZNF701 ENSG00000167562 CDS Human protein_coding chr19:53077396 chr19:53077398 nonsynonymous SNV 0.087 3 23 hm5C_associated_SNPs_53954 0 0 0 0 2 nucleolus 0.500231643921088 0.500231643921092 0.81622494 0 hm5C_site_49306 DeepMRMD:0.81622494;iRNA_m5C:0 49307 chr5 55111217 55111217 1 + G T UCEC 55111214 + 55111194 55111234 41 TCCTGGCTTCAGTGGTAGTACAAGAGGAAACGTGTTTGCAT TCCTGGCTTCAGTGGTAGTACAATAGGAAACGTGTTTGCAT < 41bp 0.804430801290431 0.457315291107434 0.63937503 0.22664493 prediction 0.608861602580862 Functional Loss - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55111214 chr5:55111217 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_53955 0 0 0 0 2 unknown 0.500231643918199 0.500231643918927 0.27875006 0 hm5C_site_49307 DeepMRMD:0.27875006;iRNA_m5C:0 49308 chr20 48558130 48558130 1 + A C UCEC 48558126 + 48558106 48558146 41 CTGCATGCCTGCAGGAATGTCTGAAGCCGAAGAAGCCTGTC CTGCATGCCTGCAGGAATGTCTGACGCCGAAGAAGCCTGTC < 41bp 0.899982199201536 0.595554404276941 0.3224747 0.15784752 prediction 0.608855589849191 Functional Loss - RNF114 ENSG00000124226 CDS Human protein_coding chr20:48558126 chr20:48558130 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_53956 0 0 1 0 2 Ribosome 0.500222059698094 0.500231643939183 0 0 hm5C_site_49308 DeepMRMD:0;iRNA_m5C:0 49309 chr3 51991072 51991072 1 + G T rs188008816 51991069 + 51991049 51991089 41 CTCACAGGTGGTCCCCAGGCCAAGATGGGCAGGTGTCACAA CTCACAGGTGGTCCCCAGGCCAATATGGGCAGGTGTCACAA < 41bp 0.838533669702564 0.534113307180227 0.106833726 0.040530533 prediction 0.608840725044673 Functional Loss - GPR62 ENSG00000180929 UTR3 Human protein_coding chr3:51991069 chr3:51991072 . . 0 24 hm5C_associated_SNPs_53957 0 0 0 1 0 exosome 0.500231643921093 0.500231643921092 0 6.66133814775094e-16 hm5C_site_49309 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 49310 chr12 6647116 6647116 1 + G T BLCA 6647114 + 6647094 6647134 41 CCACTCCTCCACCTTTGACGCTGGGGCTGGCATTGCCCTCA CCACTCCTCCACCTTTGACGCTTGGGCTGGCATTGCCCTCA < 41bp 0.804417061191692 0.476620289783866 0.6947758 0.09224889 prediction 0.608834122383384 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647114 chr12:6647116 nonsynonymous SNV 0.989 4 23 hm5C_associated_SNPs_53958 0 0 1 0 1 Ribosome 0.500230726809398 0.500231633258436 0.3895516 0 hm5C_site_49310 DeepMRMD:0.3895516;iRNA_m5C:0 49311 chr20 62853305 62853305 1 + A C UCEC 62853301 + 62853281 62853321 41 AGCAGATGACCAGGAAGTGTCGGAAGAGAATTTTGAGGAGC AGCAGATGACCAGGAAGTGTCGGACGAGAATTTTGAGGAGC < 41bp 0.804414138547579 0.410671494582781 0.79193 0.7367064 prediction 0.608828277095157 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62853301 chr20:62853305 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_53959 0 0 0 0 2 exosome 0.500231643921091 0.5002316440667 0.1104472 0 hm5C_site_49311 DeepMRMD:0.1104472;iRNA_m5C:0 49312 chr17 45299181 45299181 1 + G T LUAD 45299178 + 45299158 45299198 41 TTTGACAAGGAGAGCAATGGCACGGTCATGGGTGCTGAGCT TTTGACAAGGAGAGCAATGGCACTGTCATGGGTGCTGAGCT < 41bp 0.888744810014635 0.584349319116269 0.7729732 0.40523577 prediction 0.608790981796733 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45299178 chr17:45299181 synonymous SNV . 0 24 hm5C_associated_SNPs_53960 0 0 1 0 1 Cytosol 0.500231643921463 0.500231643921093 0.5459464 7.39852623610204e-13 hm5C_site_49312 DeepMRMD:0.5459464;iRNA_m5C:7.39852623610204e-13 49313 chr19 35758461 35758461 1 + A T LUAD 35758457 + 35758437 35758477 41 CGGGACCCTCGGGACAACGGCTCCAGGTCCGGGGACCTCCC CGGGACCCTCGGGACAACGGCTCCTGGTCCGGGGACCTCCC < 41bp 0.804393876575095 0.484418324630506 0.91025776 0.08354056 prediction 0.608787753150191 Functional Loss - LSR ENSG00000105699 CDS Human protein_coding chr19:35758457 chr19:35758461 nonsynonymous SNV 0.161 3 25 hm5C_associated_SNPs_53961 0 0 1 0 0 chromatin 0.500234993134287 0.500182162345982 0.82051552 0.000105661576610405 hm5C_site_49313 DeepMRMD:0.82051552;iRNA_m5C:0.000105661576610405 49314 chr2 27659661 27659661 1 + G T LUSC 27659658 + 27659638 27659678 41 ACAATCATGTGAAGACTTGTCGAGAAGAGCAGAAGAATCTA ACAATCATGTGAAGACTTGTCGATAAGAGCAGAAGAATCTA < 41bp 0.874746221438486 0.570363624355893 0.12924826 0.07032579 prediction 0.608765194165185 Functional Loss - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27659658 chr2:27659661 stopgain 1.000 1 24 hm5C_associated_SNPs_53962 0 0 1 0 2 Cytosol 0.500232379082545 0.500231848962957 0 1.06023917534337e-06 hm5C_site_49314 DeepMRMD:0;iRNA_m5C:1.06023917534337e-06 49315 chr14 19378018 19378018 1 + G T LUSC 19378016 + 19377996 19378036 41 TTTGATCAGTACCTTGCTATCTGCCGTCCCTTGCTCTATCC TTTGATCAGTACCTTGCTATCTTCCGTCCCTTGCTCTATCC < 41bp 0.821042164697438 0.516675027979996 0.048844457 0.034454823 prediction 0.608734273434884 Functional Loss - OR11H12 ENSG00000257115 CDS Human protein_coding chr14:19378016 chr14:19378018 nonsynonymous SNV 0.012 4 23 hm5C_associated_SNPs_53963 0 0 0 0 0 unknown 0.500231644432125 0.500231647217786 0 0 hm5C_site_49315 DeepMRMD:0;iRNA_m5C:0 49316 chr12 14927761 14927761 1 + G T UCEC 14927758 + 14927738 14927778 41 ATCCAGGCCGTGCTGCTGCCCAAGAAGACGGAGAGTCAGAA ATCCAGGCCGTGCTGCTGCCCAATAAGACGGAGAGTCAGAA < 41bp 0.865110611453479 0.560751862716927 0.2564482 0.09035677 prediction 0.608717497473105 Functional Loss - H2AFJ ENSG00000246705 CDS Human protein_coding chr12:14927758 chr12:14927761 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_53964 0 0 1 0 0 Ribosome 0.50023164411073 0.50023164392235 0 3.7676017861088e-10 hm5C_site_49316 DeepMRMD:0;iRNA_m5C:3.7676017861088e-10 49317 chr13 33629265 33629265 1 + G T UCEC 33629263 + 33629243 33629283 41 TTCGAGTGGCACAGAGGTTACAGCATCAGGCGTGGACTCTT TTCGAGTGGCACAGAGGTTACATCATCAGGCGTGGACTCTT < 41bp 0.804355290722769 0.480038932595603 0.0532282 0.017018408 prediction 0.608710581445538 Functional Loss - KL ENSG00000133116 CDS Human protein_coding chr13:33629263 chr13:33629265 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_53965 0 0 0 0 1 exosome 0.500231640871883 0.500231158178006 0 9.65387753515401e-07 hm5C_site_49317 DeepMRMD:0;iRNA_m5C:9.65387753515401e-07 49318 chr17 30814740 30814740 1 + G T LUSC 30814737 + 30814717 30814757 41 TATACGGCCGTACAGAACAGCAAGAACGCCAAGGACAAGAA TATACGGCCGTACAGAACAGCAATAACGCCAAGGACAAGAA < 41bp 0.804343922751096 0.438436121552116 0.8685069 0.8552699 prediction 0.608687845502192 Functional Loss - CDK5R1 ENSG00000176749 CDS Human protein_coding chr17:30814737 chr17:30814740 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_53966 0 0 0 0 0 chromatin 0.500231678130866 0.500231642297842 0.0264739999999999 7.16660482069642e-08 hm5C_site_49318 DeepMRMD:0.0264739999999999;iRNA_m5C:7.16660482069642e-08 49319 chr1 201839752 201839752 1 + G T LUSC 201839750 + 201839730 201839770 41 GGGCCTATGTGTCAGTGACCCTGGAACAAGTAGCCCAGTGG GGGCCTATGTGTCAGTGACCCTTGAACAAGTAGCCCAGTGG < 41bp 0.804334500939489 0.488146235071656 0.5515225 0.19143829 prediction 0.608669001878978 Functional Loss - IPO9 ENSG00000198700 CDS Human protein_coding chr1:201839750 chr1:201839752 synonymous SNV . 0 23 hm5C_associated_SNPs_53967 0 0 1 0 1 Nucleus 0.500231644198822 0.500231643929842 0.103045 5.37958788626725e-10 hm5C_site_49319 DeepMRMD:0.103045;iRNA_m5C:5.37958788626725e-10 49320 chr16 3706754 3706754 1 + G T STAD 3706752 + 3706732 3706772 41 CAGGTTCTTCTCCCGGTTCACAGGTGGGTGCTGCCTGGGCC CAGGTTCTTCTCCCGGTTCACATGTGGGTGCTGCCTGGGCC < 41bp 0.848027322249483 0.543704444791143 0.9080499 0.6755292 prediction 0.608645754916681 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3706752 chr16:3706754 stopgain 0.105 0 23 hm5C_associated_SNPs_53968 0 0 1 0 1 Cytosol 0.50023164393109 0.500231643921095 0.4650414 1.99904537367956e-11 hm5C_site_49320 DeepMRMD:0.4650414;iRNA_m5C:1.99904537367956e-11 49321 chr1 206319142 206319142 1 + G T UCEC 206319140 + 206319120 206319160 41 TCTCCATTGGCTCCCCACCACAGAACTTCACTGTCATCTTC TCTCCATTGGCTCCCCACCACATAACTTCACTGTCATCTTC < 41bp 0.844830231124777 0.540524316144099 0.29932988 0.1478554 prediction 0.608611829961356 Functional Loss - CTSE ENSG00000196188 CDS Human protein_coding chr1:206319140 chr1:206319142 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_53969 0 0 0 0 2 Endoplasmic reticulum 0.500231643920249 0.500231643477296 0 8.85906459302532e-10 hm5C_site_49321 DeepMRMD:0;iRNA_m5C:8.85906459302532e-10 49322 chr15 74425680 74425680 1 + G T LUAD 74425677 + 74425657 74425697 41 GGCCTTGTGTGGCTGCAGGCCTGGGCCGCGAGCACCCGGGT GGCCTTGTGTGGCTGCAGGCCTGTGCCGCGAGCACCCGGGT < 41bp 0.804287969851306 0.418385936652045 0.68563884 0.22450206 prediction 0.608575939702612 Functional Loss - ISLR2 ENSG00000167178 CDS Human protein_coding chr15:74425677 chr15:74425680 nonsynonymous SNV 0.738 3 24 hm5C_associated_SNPs_53970 0 0 0 0 0 Nucleus 0.50023164392043 0.500231643921092 0.37127768 0 hm5C_site_49322 DeepMRMD:0.37127768;iRNA_m5C:0 49323 chr9 140446689 140446689 1 + G T COAD 140446687 + 140446667 140446707 41 CCTCGGGCTGGAGGTTCGTGCAGATCAAGGAGATGGTCCCG CCTCGGGCTGGAGGTTCGTGCATATCAAGGAGATGGTCCCG < 41bp 0.804284417678245 0.490813834317207 0.31567234 0.21639544 prediction 0.608568835356489 Functional Loss - MRPL41 ENSG00000182154 CDS Human protein_coding chr9:140446687 chr9:140446689 nonsynonymous SNV 0.126 1 23 hm5C_associated_SNPs_53971 0 0 1 0 0 Ribosome 0.500231007070817 0.500231284053426 0 0 hm5C_site_49323 DeepMRMD:0;iRNA_m5C:0 49324 chr2 103414427 103414427 1 + A T LUAD 103414423 + 103414403 103414443 41 CCCCCTTCGCCAGCCATTTTCTCTACAAAGCTGGGGGAGGC CCCCCTTCGCCAGCCATTTTCTCTTCAAAGCTGGGGGAGGC < 41bp 0.834980442415587 0.530696092305622 0.8726683 0.2977789 prediction 0.60856870021993 Functional Loss - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103414423 chr2:103414427 nonsynonymous SNV 0.700 1 25 hm5C_associated_SNPs_53972 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921093 0.7453366 0 hm5C_site_49324 DeepMRMD:0.7453366;iRNA_m5C:0 49325 chr13 115057172 115057172 1 + G T BLCA 115057169 + 115057149 115057189 41 AGTTAGAAAAGAAACGTTTGCGGGAAGAGGAAAAAAGAAGA AGTTAGAAAAGAAACGTTTGCGGTAAGAGGAAAAAAGAAGA < 41bp 0.859913171117899 0.555628998941475 0.8491815 0.5825451 prediction 0.608568344352848 Functional Loss - UPF3A ENSG00000169062 CDS Human protein_coding chr13:115057169 chr13:115057172 stopgain 0.194 0 24 hm5C_associated_SNPs_53973 0 0 1 0 3 chromatin 0.500231643925609 0.500231643985528 0.5332728 0 hm5C_site_49325 DeepMRMD:0.5332728;iRNA_m5C:0 49326 chr11 249047 249047 1 + G T LUAD 249045 + 249025 249065 41 TTCCAGACTCTGAAGACTGCCTGGGGCCAGCAGGTAGGACT TTCCAGACTCTGAAGACTGCCTTGGGCCAGCAGGTAGGACT < 41bp 0.804275244207468 0.480094745359048 0.62305886 0.09254789 prediction 0.608550488414936 Functional Loss - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:249045 chr11:249047 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_53974 0 0 1 0 1 Ribosome 0.500231643920728 0.500231643918965 0.24611772 3.52740059383905e-12 hm5C_site_49326 DeepMRMD:0.24611772;iRNA_m5C:3.52740059383905e-12 49327 chr12 113496256 113496256 1 + G T PRAD 113496254 + 113496234 113496274 41 GCACCAGTTTCGCCAGGACACAGGTGAGCAGACACCCACCC GCACCAGTTTCGCCAGGACACATGTGAGCAGACACCCACCC < 41bp 0.851327712072292 0.547054457136092 0.7281163 0.16174051 prediction 0.608546509872401 Functional Loss - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113496254 chr12:113496256 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_53975 0 0 0 0 1 Endoplasmic reticulum 0.500231778419348 0.500231518281651 0.4562326 5.20275393212088e-07 hm5C_site_49327 DeepMRMD:0.4562326;iRNA_m5C:5.20275393212088e-07 49328 chr3 179503849 179503849 1 + G T rs116718754 179503847 + 179503827 179503867 41 TGGCAGAAGGAGGGAGCTCACGGTGCAGTACTTTTCTACCA TGGCAGAAGGAGGGAGCTCACGTTGCAGTACTTTTCTACCA < 41bp 0.806272716364264 0.502003255974503 0.90076256 0.7788859 prediction 0.608538920779522 Functional Loss - USP13 ENSG00000058056 UTR3 Human protein_coding chr3:179503847 chr3:179503849 . . 0 23 hm5C_associated_SNPs_53976 0 0 1 0 0 Ribosome 0.500231624028131 0.499847834293264 0.24375332 0.000463248056262744 hm5C_site_49328 DeepMRMD:0.24375332;iRNA_m5C:0.000463248056262744 49329 chr11 55798589 55798589 1 + G T LGG 55798586 + 55798566 55798606 41 TGTGTTGAGCATCAAGTCCTCAGGTGGCAGAAGCAAAACAT TGTGTTGAGCATCAAGTCCTCAGTTGGCAGAAGCAAAACAT < 41bp 0.86695618065689 0.562715037216843 0.40897563 0.044134676 prediction 0.608482286880092 Functional Loss - OR5AS1 ENSG00000181785 CDS Human protein_coding chr11:55798586 chr11:55798589 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_53977 0 0 0 0 0 unknown 0.500231641060807 0.500231643919153 0 0 hm5C_site_49329 DeepMRMD:0;iRNA_m5C:0 49330 chr12 113388650 113388650 1 + G T BRCA 113388648 + 113388628 113388668 41 CGCAGCTAGAATCCTGGTGGCAGGACCAGGTGCCCAGCCTG CGCAGCTAGAATCCTGGTGGCATGACCAGGTGCCCAGCCTG < 41bp 0.804240579269074 0.461241382353374 0.7822258 0.079708755 prediction 0.608481158538148 Functional Loss - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113388648 chr12:113388650 nonsynonymous SNV 0.028 0 23 hm5C_associated_SNPs_53978 0 0 0 0 0 Nucleus 0.500231643955805 0.500231643921097 0.5644516 6.94153623470584e-11 hm5C_site_49330 DeepMRMD:0.5644516;iRNA_m5C:6.94153623470584e-11 49331 chr9 138011751 138011751 1 + G T LUSC 138011748 + 138011728 138011768 41 CAGACCCTGCAGACCTGGAACACGAGCTACCCCAAGCGCAG CAGACCCTGCAGACCTGGAACACTAGCTACCCCAAGCGCAG < 41bp 0.882816448873445 0.578580900277768 0.15726918 0.06171772 prediction 0.608471097191355 Functional Loss - OLFM1 ENSG00000130558 CDS Human protein_coding chr9:138011748 chr9:138011751 synonymous SNV . 0 24 hm5C_associated_SNPs_53979 0 0 1 0 0 Endoplasmic reticulum 0.500231643921107 0.500231643921092 0 2.90878432451791e-14 hm5C_site_49331 DeepMRMD:0;iRNA_m5C:2.90878432451791e-14 49332 chr1 248084532 248084532 1 + G T LUAD 248084530 + 248084510 248084550 41 TTTCCCTCATGGACGTGATGCTGGTTTCCACCACTGTGCCC TTTCCCTCATGGACGTGATGCTTGTTTCCACCACTGTGCCC < 41bp 0.830028605217988 0.525797260261488 0.060477227 0.024016052 prediction 0.608462689913001 Functional Loss - OR2T8 ENSG00000177462 CDS Human protein_coding chr1:248084530 chr1:248084532 synonymous SNV . 0 23 hm5C_associated_SNPs_53980 0 0 0 0 0 exosome 0.500231642880762 0.50023164392108 0 0 hm5C_site_49332 DeepMRMD:0;iRNA_m5C:0 49333 chr11 62505798 62505798 1 + G T GBM 62505796 + 62505776 62505816 41 GTACCTCCAGCTGACACAGTCAGAACTCAGCAGCTACCATA GTACCTCCAGCTGACACAGTCATAACTCAGCAGCTACCATA < 41bp 0.811231175237724 0.507008105235544 0.8239151 0.34113508 prediction 0.608446140004361 Functional Loss - TTC9C ENSG00000162222 CDS Human protein_coding chr11:62505796 chr11:62505798 stopgain 0.996 0 23 hm5C_associated_SNPs_53981 0 0 1 0 1 Ribosome 0.500231658396272 0.500229056384306 0.6478302 5.20402393244801e-06 hm5C_site_49333 DeepMRMD:0.6478302;iRNA_m5C:5.20402393244801e-06 49334 chr8 106801059 106801059 1 + G T LUSC 106801057 + 106801037 106801077 41 TGCCAGTCAGATGACTCTCACAGAAGGGATGTACCCTGCAC TGCCAGTCAGATGACTCTCACATAAGGGATGTACCCTGCAC < 41bp 0.809734733749384 0.505512169955583 0.8243834 0.13305077 prediction 0.608445127587601 Functional Loss - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106801057 chr8:106801059 stopgain 1.000 1 23 hm5C_associated_SNPs_53982 0 0 0 0 1 chromatin 0.500231607473999 0.500231643921091 0.6487668 0 hm5C_site_49334 DeepMRMD:0.6487668;iRNA_m5C:0 49335 chr15 34355903 34355903 1 + G T rs145125191 34355900 + 34355880 34355920 41 TCCAAGTGGTCTACAAGAGTCAGGGTAAGGAAAGCCCAGGG TCCAAGTGGTCTACAAGAGTCAGTGTAAGGAAAGCCCAGGG < 41bp 0.804208894157587 0.498995553302507 0.85080665 0.1213187 prediction 0.608417788315174 Functional Loss - CHRM5 ENSG00000184984 CDS Human protein_coding chr15:34355900 chr15:34355903 nonsynonymous SNV 0.237 1 24 hm5C_associated_SNPs_53983 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921093 0.7016133 0 hm5C_site_49335 DeepMRMD:0.7016133;iRNA_m5C:0 49336 chr6 47680153 47680153 1 + G T CESC 47680150 + 47680130 47680170 41 CATCTATACCTCTGCATATTCTAGACTTTCGAGCTCCAGAG CATCTATACCTCTGCATATTCTATACTTTCGAGCTCCAGAG < 41bp 0.878536550944506 0.574346370790041 0.24584717 0.118352026 prediction 0.60838036030893 Functional Loss - ADGRF4 ENSG00000153294 CDS Human protein_coding chr6:47680150 chr6:47680153 nonsynonymous SNV 0.003 1 24 hm5C_associated_SNPs_53984 0 0 0 0 1 exosome 0.500231643921093 0.500231643935913 0 0 hm5C_site_49336 DeepMRMD:0;iRNA_m5C:0 49337 chr5 131670546 131670546 1 + C A rs272879 131670549 - 131670529 131670569 41 GCTATGATATAACGCCTGGGCAGGGTTCGCAATAGCAGCCA GCTATGATATAACGCCTGGGCAGTGTTCGCAATAGCAGCCA < 41bp 0.88664220030724 0.582495314485942 0.15272516 0.017550737 prediction 0.608293771642596 Functional Loss - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131670549 chr5:131670546 synonymous SNV . 0 24 hm5C_associated_SNPs_53985 0 0 0 0 2 Endoplasmic reticulum 0.500231643790486 0.500231745364461 0 0 hm5C_site_49337 DeepMRMD:0;iRNA_m5C:0 49338 chr19 37618194 37618194 1 + G T UCEC 37618191 + 37618171 37618211 41 AAGGCAAGATGGAGAAGCAACAAGAAAATCAGAAGGAATAT AAGGCAAGATGGAGAAGCAACAATAAAATCAGAAGGAATAT < 41bp 0.863096682890487 0.558956426352333 0.7433374 0.3755569 prediction 0.608280513076309 Functional Loss - ZNF420 ENSG00000197050 CDS Human protein_coding chr19:37618191 chr19:37618194 stopgain 0.955 0 24 hm5C_associated_SNPs_53986 0 0 1 0 0 chromatin 0.500231643921098 0.50023164401341 0.4866748 0 hm5C_site_49338 DeepMRMD:0.4866748;iRNA_m5C:0 49339 chrX 102841694 102841694 1 + G T UCEC 102841691 + 102841671 102841711 41 AGCCACAAGACGAGAGAAAGCCAGAAGTAACTTGTACTCTG AGCCACAAGACGAGAGAAAGCCATAAGTAACTTGTACTCTG < 41bp 0.804134535077392 0.451016526529372 0.8726649 0.4130221 prediction 0.608269070154784 Functional Loss - TCEAL4 ENSG00000133142 CDS Human protein_coding chrX:102841691 chrX:102841694 stopgain 0.986 0 24 hm5C_associated_SNPs_53987 0 0 1 0 0 Ribosome 0.500231703716912 0.500231643920355 0.7453298 1.19593113412364e-07 hm5C_site_49339 DeepMRMD:0.7453298;iRNA_m5C:1.19593113412364e-07 49340 chr9 117400890 117400890 1 + G T PRAD 117400888 + 117400868 117400908 41 GACTGGGGTGAGCCCTGCAACAGCGGAGGGGCCTGAGAACT GACTGGGGTGAGCCCTGCAACATCGGAGGGGCCTGAGAACT < 41bp 0.841112716037896 0.536985700622852 0.8509767 0.8334255 prediction 0.608254030830088 Functional Loss - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117400888 chr9:117400890 nonsynonymous SNV 0.063 0 23 hm5C_associated_SNPs_53988 0 0 1 0 1 unknown 0.500231643921092 0.500231643921092 0.0351024 0 hm5C_site_49340 DeepMRMD:0.0351024;iRNA_m5C:0 49341 chr19 1220706 1220706 1 + G T LUAD 1220704 + 1220684 1220724 41 CAAGGTGGACATCTGGTCGGCTGGGGTCACCCTGTAAGTGC CAAGGTGGACATCTGGTCGGCTTGGGTCACCCTGTAAGTGC < 41bp 0.804109735248092 0.480827478882028 0.87501097 0.70037025 prediction 0.608219470496183 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220704 chr19:1220706 nonsynonymous SNV 0.936 5 23 hm5C_associated_SNPs_53989 1 0 1 0 1 Ribosome 0.500231643921196 0.500231643920647 0.34928144 1.09756648214443e-12 hm5C_site_49341 DeepMRMD:0.34928144;iRNA_m5C:1.09756648214443e-12 Peutz-Jeghers syndrome Peutz-Jeghers syndrome 49342 chr19 1220707 1220707 1 + G T LUAD 1220704 + 1220684 1220724 41 CAAGGTGGACATCTGGTCGGCTGGGGTCACCCTGTAAGTGC CAAGGTGGACATCTGGTCGGCTGTGGTCACCCTGTAAGTGC < 41bp 0.804109735248092 0.42764152104101 0.87501097 0.18995634 prediction 0.608219470496183 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220704 chr19:1220707 nonsynonymous SNV 0.965 5 24 hm5C_associated_SNPs_53990 0 0 1 0 1 Ribosome 0.500231643921196 0.500231643933302 0.75002194 0 hm5C_site_49342 DeepMRMD:0.75002194;iRNA_m5C:0 49343 chr19 10398390 10398390 1 + G T UCEC 10398387 + 10398367 10398407 41 ACCGGCCTGGATCTGGCCAACGTGACCTTGACCTACGAGTT ACCGGCCTGGATCTGGCCAACGTTACCTTGACCTACGAGTT < 41bp 0.804108362905745 0.428177756783914 0.25589836 0.0866327 prediction 0.60821672581149 Functional Loss - ICAM4 ENSG00000105371 CDS Human protein_coding chr19:10398387 chr19:10398390 nonsynonymous SNV 0.176 3 24 hm5C_associated_SNPs_53991 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_49343 DeepMRMD:0;iRNA_m5C:0 49344 chr11 64876905 64876905 1 + G T LUSC 64876902 + 64876882 64876922 41 TGCTGCTCTCCCGCCTCTGCCTGGACTACGAGACGGCCACC TGCTGCTCTCCCGCCTCTGCCTGTACTACGAGACGGCCACC < 41bp 0.880322723355609 0.576253447495883 0.91711164 0.29946208 prediction 0.608138551719453 Functional Loss - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64876902 chr11:64876905 nonsynonymous SNV 0.995 4 24 hm5C_associated_SNPs_53992 0 0 1 0 1 Ribosome 0.500231643915388 0.500231648645614 0.83422328 0 hm5C_site_49344 DeepMRMD:0.83422328;iRNA_m5C:0 49345 chr1 158262529 158262529 1 + G T OV 158262526 + 158262506 158262546 41 AGGAGCAACTGGGCACTAAACATGGTGATATTCTTCCTAAT AGGAGCAACTGGGCACTAAACATTGTGATATTCTTCCTAAT < 41bp 0.804062273799781 0.428959116838787 0.90615976 0.29009956 prediction 0.608124547599562 Functional Loss - CD1C ENSG00000158481 CDS Human protein_coding chr1:158262526 chr1:158262529 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_53993 0 0 0 0 0 exosome 0.500231643920895 0.500231626462309 0.81231952 3.4917172930804e-08 hm5C_site_49345 DeepMRMD:0.81231952;iRNA_m5C:3.4917172930804e-08 49346 chrX 109764800 109764800 1 + G T LUAD 109764798 + 109764778 109764818 41 TTTCCTCAGGCATTTCTACCCGGCTGTGATGGCCTTGTGAT TTTCCTCAGGCATTTCTACCCGTCTGTGATGGCCTTGTGAT < 41bp 0.80405102691431 0.483046427013669 0.6565101 0.3047076 prediction 0.60810205382862 Functional Loss - TDGF1P3 ENSG00000225366 ncRNA_exonic Human transcribed_processed_pseudogene chrX:109764798 chrX:109764800 . . 0 23 hm5C_associated_SNPs_53994 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0.3130202 0 hm5C_site_49346 DeepMRMD:0.3130202;iRNA_m5C:0 49347 chr11 94278541 94278541 1 + G T UCEC 94278538 + 94278518 94278558 41 TACAAGTTCTACCTGGCTTTCGAGAACTCGCAGCACCTGGA TACAAGTTCTACCTGGCTTTCGATAACTCGCAGCACCTGGA < 41bp 0.804050861799036 0.437369151093731 0.901876 0.10458246 prediction 0.608101723598072 Functional Loss - FUT4 ENSG00000196371 CDS Human protein_coding chr11:94278538 chr11:94278541 nonsynonymous SNV 0.996 3 24 hm5C_associated_SNPs_53995 0 0 1 0 0 Endoplasmic reticulum 0.500231644105034 0.500231618930441 0.803752 5.03491861536531e-08 hm5C_site_49347 DeepMRMD:0.803752;iRNA_m5C:5.03491861536531e-08 49348 chr11 6898303 6898303 1 + G T LUAD 6898301 + 6898281 6898321 41 GTCATCATGGGCCACATATCCTGTGCCCAGCTGGCAGCTGC GTCATCATGGGCCACATATCCTTTGCCCAGCTGGCAGCTGC < 41bp 0.836002822147362 0.531978935035642 0.25992176 0.09334037 prediction 0.60804777422344 Functional Loss - OR10A4 ENSG00000170782 CDS Human protein_coding chr11:6898301 chr11:6898303 nonsynonymous SNV 0.001 2 23 hm5C_associated_SNPs_53996 0 0 0 0 0 exosome 0.500231662077539 0.500231659297752 0 5.55957524461803e-09 hm5C_site_49348 DeepMRMD:0;iRNA_m5C:5.55957524461803e-09 49349 chr12 7045138 7045138 1 + G T COAD 7045135 + 7045115 7045155 41 TCTGGACCCCCAATGGGTCCCAAGGGGGGAGGGGCTGCCTC TCTGGACCCCCAATGGGTCCCAATGGGGGAGGGGCTGCCTC < 41bp 0.892615995907454 0.588592635928631 0.89669025 0.37392914 prediction 0.608046719957646 Functional Loss - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7045135 chr12:7045138 nonsynonymous SNV 0.138 1 24 hm5C_associated_SNPs_53997 0 0 1 0 0 Endoplasmic reticulum 0.500231643921024 0.500231643921092 0.7933805 0 hm5C_site_49349 DeepMRMD:0.7933805;iRNA_m5C:0 49350 chr6 46656263 46656263 1 + G T LUSC 46656260 + 46656240 46656280 41 AGTGCTGGGCTGCGTGCTAGCGGGCCTGGTGCCGGCAGGCT AGTGCTGGGCTGCGTGCTAGCGGTCCTGGTGCCGGCAGGCT < 41bp 0.874682635582876 0.570659347745948 0.90384895 0.15216067 prediction 0.608046575673856 Functional Loss - TDRD6 ENSG00000180113 CDS Human protein_coding chr6:46656260 chr6:46656263 nonsynonymous SNV 0.884 3 24 hm5C_associated_SNPs_53998 0 0 0 0 0 Cytosol 0.500231643921138 0.500231643921092 0.8076979 9.14823772291129e-14 hm5C_site_49350 DeepMRMD:0.8076979;iRNA_m5C:9.14823772291129e-14 49351 chr10 25465108 25465108 1 + G T UCEC 25465105 + 25465085 25465125 41 CTGGGCCACAGCTGGCGGCGCAAGGACGGGCTCGGCGGGGA CTGGGCCACAGCTGGCGGCGCAATGACGGGCTCGGCGGGGA < 41bp 0.804000676927234 0.451526740045099 0.8945209 0.85447407 prediction 0.608001353854469 Functional Loss - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25465105 chr10:25465108 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_53999 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921104 0.08009366 0 hm5C_site_49351 DeepMRMD:0.08009366;iRNA_m5C:0 49352 chr18 72173173 72173173 1 + G T rs138391233 72173170 + 72173150 72173190 41 AAGAAGACCGTGTGCATTTACGGGCACCTGGATGTGCAGCC AAGAAGACCGTGTGCATTTACGGTCACCTGGATGTGCAGCC < 41bp 0.803995081800403 0.423400525689469 0.8880519 0.23318991 prediction 0.607990163600805 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72173170 chr18:72173173 synonymous SNV . 0 24 hm5C_associated_SNPs_54000 0 0 1 0 2 Ribosome 0.500231644006135 0.500231648428953 0.7761038 0 hm5C_site_49352 DeepMRMD:0.7761038;iRNA_m5C:0 49353 chr19 3612061 3612061 1 + C A LUSC 3612063 - 3612043 3612083 41 CGCCATCCTGCGCTTCCACGCGGGGCCGCCCTACGAGGACA CGCCATCCTGCGCTTCCACGCGTGGCCGCCCTACGAGGACA < 41bp 0.8319376737674 0.527947370326195 0.9502904 0.91339827 prediction 0.60798060688241 Functional Loss - CACTIN ENSG00000105298 CDS Human protein_coding chr19:3612063 chr19:3612061 nonsynonymous SNV 0.003 4 23 hm5C_associated_SNPs_54001 0 0 1 0 0 Ribosome 0.500231643921089 0.500231643913886 0.07378426 1.44071421459557e-11 hm5C_site_49353 DeepMRMD:0.07378426;iRNA_m5C:1.44071421459557e-11 49354 chr2 74730700 74730700 1 + G T rs370661627 74730697 + 74730677 74730717 41 CTCCCCAGCTCCCGCAGCTGCTCGGTCCCTGCAAAGCCCCC CTCCCCAGCTCCCGCAGCTGCTCTGTCCCTGCAAAGCCCCC < 41bp 0.803987255761799 0.446714496091022 0.27098244 0.0866898 prediction 0.607974511523597 Functional Loss - LBX2-AS1 ENSG00000257702 ncRNA_exonic Human antisense chr2:74730697 chr2:74730700 . . 0 24 hm5C_associated_SNPs_54002 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_49354 DeepMRMD:0;iRNA_m5C:0 49355 chr20 31652609 31652609 1 + G T SARC 31652607 + 31652587 31652627 41 TCAACACCACGTTTGGACTCCTGCAGACCAACGGCGCCCTC TCAACACCACGTTTGGACTCCTTCAGACCAACGGCGCCCTC < 41bp 0.827251074843996 0.52327100257578 0.04208663 0.031801462 prediction 0.607960144536432 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31652607 chr20:31652609 synonymous SNV . 0 23 hm5C_associated_SNPs_54003 0 0 0 0 1 exosome 0.500231643921072 0.500231643921092 0 0 hm5C_site_49355 DeepMRMD:0;iRNA_m5C:0 49356 chr4 151505387 151505387 1 + A C rs567573442 151505383 + 151505363 151505403 41 AGTCACCTGAAATAGGAATCCGGCAGAAGACCTTCATTAAT AGTCACCTGAAATAGGAATCCGGCCGAAGACCTTCATTAAT < 41bp 0.856633461381193 0.552660675620247 0.5216648 0.39300966 prediction 0.607945571521892 Functional Loss - MAB21L2 ENSG00000181541 UTR3 Human protein_coding chr4:151505383 chr4:151505387 . . 0 25 hm5C_associated_SNPs_54004 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921108 0.0433296000000001 0 hm5C_site_49356 DeepMRMD:0.0433296000000001;iRNA_m5C:0 49357 chr14 93673649 93673649 1 + G T PAAD 93673647 + 93673627 93673667 41 ACAGTTGAGGATGGCCGGAGCCGAGGGCGCCGCTGGGCGGC ACAGTTGAGGATGGCCGGAGCCTAGGGCGCCGCTGGGCGGC < 41bp 0.849212683001308 0.545255572552044 0.9123268 0.8429111 prediction 0.607914220898527 Functional Loss - UBR7 ENSG00000012963 CDS Human protein_coding chr14:93673647 chr14:93673649 stopgain 0.031 0 23 hm5C_associated_SNPs_54005 0 0 1 0 0 Ribosome 0.500273848781757 0.500231643921934 0.1388314 8.44097196477378e-05 hm5C_site_49357 DeepMRMD:0.1388314;iRNA_m5C:8.44097196477378e-05 49358 chr1 89990471 89990471 1 + G T rs575892058 89990469 + 89990449 89990489 41 GCCGGGGCTTCCCGCTGAGCCCGCAGCCTCCGGCAGCCGGG GCCGGGGCTTCCCGCTGAGCCCTCAGCCTCCGGCAGCCGGG < 41bp 0.816158135985551 0.51220690139819 0.4311243 0.15576917 prediction 0.607902469174723 Functional Loss - LRRC8B ENSG00000197147 UTR5 Human protein_coding chr1:89990469 chr1:89990471 . . 0 23 hm5C_associated_SNPs_54006 0 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0.500231643566833 0 7.08519687364628e-10 hm5C_site_49358 DeepMRMD:0;iRNA_m5C:7.08519687364628e-10 49359 chr6 43251477 43251477 1 + G T LUAD 43251474 + 43251454 43251494 41 GATAGAGGGCTCTGCCCTGTCTGGGGCCCCCCGGGAAACCC GATAGAGGGCTCTGCCCTGTCTGTGGCCCCCCGGGAAACCC < 41bp 0.891356434552003 0.587411640845457 0.6835862 0.20223051 prediction 0.607889587413094 Functional Loss - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43251474 chr6:43251477 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_54007 0 0 0 0 0 exosome 0.500231622021845 0.500188781089372 0.3671724 8.56818649450641e-05 hm5C_site_49359 DeepMRMD:0.3671724;iRNA_m5C:8.56818649450641e-05 49360 chr8 125035716 125035716 1 + G T LUSC 125035713 + 125035693 125035733 41 ACTATCCCTGACGTTTTCATCTGGATGCTCAGCAACAACAG ACTATCCCTGACGTTTTCATCTGTATGCTCAGCAACAACAG < 41bp 0.870965866068326 0.567021894028084 0.2574284 0.05256456 prediction 0.607887944080484 Functional Loss - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125035713 chr8:125035716 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_54008 0 0 0 0 1 exosome 0.500221176970538 0.50023085889533 0 0 hm5C_site_49360 DeepMRMD:0;iRNA_m5C:0 49361 chr11 114183169 114183169 1 + G T LUAD 114183167 + 114183147 114183187 41 ACAACGAAGGACTTTTCTCCCTGGTGGCGAGGAAGCTGAGC ACAACGAAGGACTTTTCTCCCTTGTGGCGAGGAAGCTGAGC < 41bp 0.805946362803465 0.502004180194133 0.22213283 0.07704899 prediction 0.607884365218664 Functional Loss - NNMT ENSG00000166741 CDS Human protein_coding chr11:114183167 chr11:114183169 synonymous SNV . 0 23 hm5C_associated_SNPs_54009 0 0 0 0 0 Cytosol 0.500230254652313 0.500231641692321 0 0 hm5C_site_49361 DeepMRMD:0;iRNA_m5C:0 49362 chr16 33013816 33013816 1 + G T LUAD 33013814 + 33013794 33013834 41 CCTGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGC CCTGGTGCAGCTGGTGCAGTCTTGGGCTGAGGTGAAGAAGC < 41bp 0.803941473790261 0.49784336834693 0.88304937 0.70898527 prediction 0.607882947580522 Functional Loss - SLC6A10P;TP53TG3B ENSG00000259997 ncRNA_exonic Human IG_V_pseudogene chr16:33013814 chr16:33013816 . . 0 23 hm5C_associated_SNPs_54010 0 0 0 0 0 unknown 0.500231642547736 0.500231784837352 0.3481282 0 hm5C_site_49362 DeepMRMD:0.3481282;iRNA_m5C:0 49363 chrX 50051905 50051905 1 + G T UCEC 50051902 + 50051882 50051922 41 GTCAGCGGAAGCAGTCCTGCCAGGAAGAGTCGTTGGCTGTG GTCAGCGGAAGCAGTCCTGCCAGTAAGAGTCGTTGGCTGTG < 41bp 0.803933610383868 0.435032419860481 0.83396316 0.18902627 prediction 0.607867220767737 Functional Loss - CCNB3 ENSG00000147082 CDS Human protein_coding chrX:50051902 chrX:50051905 stopgain 0.000 0 24 hm5C_associated_SNPs_54011 0 0 0 0 0 exosome 0.500230868313489 0.500300128548614 0.66792632 0 hm5C_site_49363 DeepMRMD:0.66792632;iRNA_m5C:0 Cognitive function 49364 chr8 36780067 36780067 1 + G T UCEC 36780064 + 36780044 36780084 41 GTGGACTGGAAGGGTCCCTCCAAGAAACAAATCTGCATCTC GTGGACTGGAAGGGTCCCTCCAATAAACAAATCTGCATCTC < 41bp 0.803926801274647 0.434322366313119 0.28920716 0.056647927 prediction 0.607853602549295 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780064 chr8:36780067 stopgain 0.059 0 24 hm5C_associated_SNPs_54012 0 0 0 0 2 unknown 0.500231645183159 0.500231643864489 0 2.637341012246e-09 hm5C_site_49364 DeepMRMD:0;iRNA_m5C:2.637341012246e-09 49365 chr16 58286725 58286725 1 + G T UCEC 58286723 + 58286703 58286743 41 TCAGCGACCTCCACGATTATCAGAAATTAAAATATCAGCAG TCAGCGACCTCCACGATTATCATAAATTAAAATATCAGCAG < 41bp 0.836347009257808 0.532427652556277 0.83590955 0.25903317 prediction 0.607838713403063 Functional Loss - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58286723 chr16:58286725 stopgain 0.093 0 23 hm5C_associated_SNPs_54013 0 0 0 0 2 Nucleus 0.500231647009707 0.500231643921107 0.6718191 6.17719875251055e-09 hm5C_site_49365 DeepMRMD:0.6718191;iRNA_m5C:6.17719875251055e-09 49366 chr1 9416202 9416202 1 + G T LUAD 9416199 + 9416179 9416219 41 CGGCATCCGGTGGCCCAGAGCACGGACGCTATCAGGGGCAA CGGCATCCGGTGGCCCAGAGCACTGACGCTATCAGGGGCAA < 41bp 0.803905581124918 0.418698477969085 0.50333434 0.35288665 prediction 0.607811162249835 Functional Loss - SPSB1 ENSG00000171621 CDS Human protein_coding chr1:9416199 chr1:9416202 synonymous SNV . 0 24 hm5C_associated_SNPs_54014 0 0 1 0 0 nucleus 0.500231643921049 0.500232051215001 0.00666867999999998 0 hm5C_site_49366 DeepMRMD:0.00666867999999998;iRNA_m5C:0 49367 chr16 24788444 24788444 1 + G T LUSC 24788442 + 24788422 24788462 41 AGCAGCCACAGCCGCAGCCGCAGCAGCAGCAGCCACAGCAG AGCAGCCACAGCCGCAGCCGCATCAGCAGCAGCCACAGCAG < 41bp 0.803905150063274 0.476878121983145 0.3975218 0.1188609 prediction 0.607810300126548 Functional Loss - TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24788442 chr16:24788444 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_54015 0 0 0 0 0 Nucleus 0.500231378525524 0.500268507878315 0 0 hm5C_site_49367 DeepMRMD:0;iRNA_m5C:0 49368 chr1 247769279 247769279 1 + A T SKCM 247769275 + 247769255 247769295 41 ACATTGCTGTCTGCAAACCCCTCCACTATGTAGTCATCATG ACATTGCTGTCTGCAAACCCCTCCTCTATGTAGTCATCATG < 41bp 0.809995798267714 0.506091732412679 0.9403261 0.03370413 prediction 0.607808131710069 Functional Loss - OR2G3 ENSG00000177476 CDS Human protein_coding chr1:247769275 chr1:247769279 nonsynonymous SNV 0.744 1 25 hm5C_associated_SNPs_54016 0 0 0 0 0 unknown 0.50023164394609 0.50023164392705 0.8806522 3.80804277000379e-11 hm5C_site_49368 DeepMRMD:0.8806522;iRNA_m5C:3.80804277000379e-11 49369 chr2 95944476 95944476 1 + G T UCEC 95944474 + 95944454 95944494 41 ACTTGGTTCCTGCAGGAGAACAGCACCTTCAACGCCCTTCC ACTTGGTTCCTGCAGGAGAACATCACCTTCAACGCCCTTCC < 41bp 0.803895867961162 0.471188398572487 0.86320525 0.21069425 prediction 0.607791735922324 Functional Loss - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95944474 chr2:95944476 nonsynonymous SNV 0.566 0 23 hm5C_associated_SNPs_54017 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643921092 0.7264105 0 hm5C_site_49369 DeepMRMD:0.7264105;iRNA_m5C:0 49370 chr7 65553849 65553849 1 + G T UCEC 65553846 + 65553826 65553866 41 ACCCATCTCAGCAGGATGGCCGAGGACCTCATCCTCTACTG ACCCATCTCAGCAGGATGGCCGATGACCTCATCCTCTACTG < 41bp 0.803895789191067 0.41679251667064 0.4670319 0.12880862 prediction 0.607791578382135 Functional Loss - ASL ENSG00000126522;ENSG00000249319 CDS Human other chr7:65553846 chr7:65553849 nonsynonymous SNV 0.989 5 24 hm5C_associated_SNPs_54018 0 0 1 0 2 Ribosome 0.500231644414317 0.500232616536816 0 0 hm5C_site_49370 DeepMRMD:0;iRNA_m5C:0 49371 chr20 60503462 60503462 1 + G T LUSC 60503459 + 60503439 60503479 41 CCGGCGGCCGTGCGGAAGAACTGGACCATCACCCGCCTGAA CCGGCGGCCGTGCGGAAGAACTGTACCATCACCCGCCTGAA < 41bp 0.803894325689028 0.468897084728044 0.8975998 0.2965743 prediction 0.607788651378057 Functional Loss - CDH4 ENSG00000179242 CDS Human protein_coding chr20:60503459 chr20:60503462 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_54019 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.7951996 0 hm5C_site_49371 DeepMRMD:0.7951996;iRNA_m5C:0 49372 chr12 133758594 133758594 1 + G T UCEC 133758592 + 133758572 133758612 41 CTGACCGTAGGGATGGCCACCAGGGTCCGGACAGCTTCTAT CTGACCGTAGGGATGGCCACCATGGTCCGGACAGCTTCTAT < 41bp 0.804490107485118 0.500603354583717 0.4837222 0.028515667 prediction 0.607773505802802 Functional Loss - ZNF268 ENSG00000090612;ENSG00000256825 CDS Human other chr12:133758592 chr12:133758594 nonsynonymous SNV 0.774 1 23 hm5C_associated_SNPs_54020 0 0 1 0 2 chromatin 0.500231633613343 0.500231643921093 0 0 hm5C_site_49372 DeepMRMD:0;iRNA_m5C:0 49373 chr1 74957883 74957883 1 + G T LUAD 74957881 + 74957861 74957901 41 ACCTGGCCGGAGTCATGTGGCAGCATTAAGAAGTCGTTTCG ACCTGGCCGGAGTCATGTGGCATCATTAAGAAGTCGTTTCG < 41bp 0.803885155337006 0.495125682558244 0.86335576 0.7842586 prediction 0.607770310674012 Functional Loss - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74957881 chr1:74957883 nonsynonymous SNV 0.880 2 23 hm5C_associated_SNPs_54021 0 0 0 0 1 unknown 0.500231645200689 0.500231643921092 0.15819432 2.55919352376566e-09 hm5C_site_49373 DeepMRMD:0.15819432;iRNA_m5C:2.55919352376566e-09 49374 chr6 130415512 130415512 1 + G T UCEC 130415510 + 130415490 130415530 41 GCGAGACATCTGGGCCCTCACAGGTATGTGGTAGCTGTCAC GCGAGACATCTGGGCCCTCACATGTATGTGGTAGCTGTCAC < 41bp 0.828973027931361 0.525098290323088 0.74433327 0.41739464 prediction 0.607749475216546 Functional Loss - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130415510 chr6:130415512 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_54022 0 0 1 0 1 nucleoplasm 0.500231643912502 0.500231636681427 0.48866654 1.44621501441122e-08 hm5C_site_49374 DeepMRMD:0.48866654;iRNA_m5C:1.44621501441122e-08 49375 chr9 131123542 131123542 1 + A C rs7048106 131123538 + 131123518 131123558 41 ACCCAAGCCCACCCTGACCCCAGAACCCCACAGCCCCACTG ACCCAAGCCCACCCTGACCCCAGACCCCCACAGCCCCACTG < 41bp 0.814867159266924 0.510993035988989 0.33621413 0.21145278 prediction 0.60774824655587 Functional Loss - MIR1268A ENSG00000167114 UTR3 Human protein_coding chr9:131123538 chr9:131123542 . . 0 25 hm5C_associated_SNPs_54023 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_49375 DeepMRMD:0;iRNA_m5C:0 49376 chr3 44672589 44672589 1 + G T UCEC 44672586 + 44672566 44672606 41 GTCAAGGATCAGGACACTCTCCAGAAGGTGGTGAGTGCCCC GTCAAGGATCAGGACACTCTCCATAAGGTGGTGAGTGCCCC < 41bp 0.803873197185067 0.437474544907827 0.3159969 0.050548494 prediction 0.607746394370134 Functional Loss - ZNF197;ZNF660-ZNF197 ENSG00000186448 CDS Human protein_coding chr3:44672586 chr3:44672589 nonsynonymous SNV 0.028 2 24 hm5C_associated_SNPs_54024 0 0 1 0 1 unknown 0.500231643903889 0.500231643925868 0 0 hm5C_site_49376 DeepMRMD:0;iRNA_m5C:0 49377 chr16 31092602 31092602 1 + G T UCEC 31092600 + 31092580 31092620 41 ATCAGAAACCCCCAGAGGCCCAGGAGAGAGTGTGGAGAGAG ATCAGAAACCCCCAGAGGCCCATGAGAGAGTGTGGAGAGAG < 41bp 0.807316018700131 0.503452384426811 0.85844964 0.30548745 prediction 0.607727268546639 Functional Loss - ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31092600 chr16:31092602 stopgain 0.070 0 23 hm5C_associated_SNPs_54025 0 0 0 0 0 Endoplasmic reticulum 0.500231643921093 0.500231643950428 0.71689928 0 hm5C_site_49377 DeepMRMD:0.71689928;iRNA_m5C:0 49378 chrX 36122647 36122647 1 + G T HNSC 36122645 + 36122625 36122665 41 CTATCCCGTGTAGTGCCATACTGCAGCAATAATATGCCCCC CTATCCCGTGTAGTGCCATACTTCAGCAATAATATGCCCCC < 41bp 0.803859749422772 0.491407089191062 0.16250622 0.040121853 prediction 0.607719498845545 Functional Loss - CFAP47 ENSG00000176034 CDS Human other chrX:36122645 chrX:36122647 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_54026 0 0 0 0 1 cytosol 0.500231643921098 0.500231643921095 0 6.66133814775094e-15 hm5C_site_49378 DeepMRMD:0;iRNA_m5C:6.66133814775094e-15 Caudate activity during reward 49379 chrX 152034470 152034470 1 + G T UCEC 152034467 + 152034447 152034487 41 CAGTTGGTACCCATCCTCATCGAGGCAGCCAGGAACGGCAA CAGTTGGTACCCATCCTCATCGATGCAGCCAGGAACGGCAA < 41bp 0.887492255734414 0.583634248711831 0.9075552 0.22604352 prediction 0.607716014045167 Functional Loss - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152034467 chrX:152034470 nonsynonymous SNV 0.290 1 24 hm5C_associated_SNPs_54027 0 0 1 0 1 Ribosome 0.500231859945246 0.500231678314794 0.8151104 3.63260904467921e-07 hm5C_site_49379 DeepMRMD:0.8151104;iRNA_m5C:3.63260904467921e-07 49380 chr12 47629392 47629392 1 + G T OV 47629390 + 47629370 47629410 41 GTTTTCTTCCGCCCAAGCTCCGGCGGCAGAAGGCCACCTTC GTTTTCTTCCGCCCAAGCTCCGTCGGCAGAAGGCCACCTTC < 41bp 0.851246569691551 0.547390873052117 0.9235255 0.2562346 prediction 0.607711393278867 Functional Loss - PCED1B ENSG00000179715 CDS Human protein_coding chr12:47629390 chr12:47629392 synonymous SNV . 0 23 hm5C_associated_SNPs_54028 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.847051 0 hm5C_site_49380 DeepMRMD:0.847051;iRNA_m5C:0 49381 chr9 90501563 90501563 1 + G T UCEC 90501560 + 90501540 90501580 41 GGCCGGACCCAAGCCGGGATCAAGGCTCAGGAAGGACCTCA GGCCGGACCCAAGCCGGGATCAATGCTCAGGAAGGACCTCA < 41bp 0.803850885927093 0.422541350730637 0.8858948 0.2584128 prediction 0.607701771854186 Functional Loss - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90501560 chr9:90501563 nonsynonymous SNV 0.000 3 24 hm5C_associated_SNPs_54029 0 0 0 0 0 exosome 0.500231643921246 0.500231643921092 0.7717896 3.06865644006393e-13 hm5C_site_49381 DeepMRMD:0.7717896;iRNA_m5C:3.06865644006393e-13 49382 chr1 117605061 117605061 1 + G T LUAD 117605058 + 117605038 117605078 41 AGGACTTTGTGGTAGAGCTTCAGGGTTTGCTTCTGCCACAG AGGACTTTGTGGTAGAGCTTCAGTGTTTGCTTCTGCCACAG < 41bp 0.885310566560297 0.5814732804797 0.9190078 0.42612314 prediction 0.607674572161193 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117605058 chr1:117605061 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_54030 0 0 1 0 2 Nucleus 0.500231643921092 0.50023164449643 0.8380156 0 hm5C_site_49382 DeepMRMD:0.8380156;iRNA_m5C:0 49383 chr5 53814156 53814156 1 + G T LUAD 53814153 + 53814133 53814173 41 CACCTTCCAGCCGCCCGGCGCGGGCTTCCCGTACGGCGGGG CACCTTCCAGCCGCCCGGCGCGGTCTTCCCGTACGGCGGGG < 41bp 0.803829421596092 0.421858803443724 0.8680432 0.25366396 prediction 0.607658843192185 Functional Loss - SNX18 ENSG00000178996 CDS Human protein_coding chr5:53814153 chr5:53814156 nonsynonymous SNV 0.934 0 24 hm5C_associated_SNPs_54031 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.7360864 0 hm5C_site_49383 DeepMRMD:0.7360864;iRNA_m5C:0 49384 chr13 34395333 34395333 1 + G T UCEC 34395330 + 34395310 34395350 41 ATCAGGTGCTGGAAAAAAGACAAGAATTATGTGTATTCTAC ATCAGGTGCTGGAAAAAAGACAATAATTATGTGTATTCTAC < 41bp 0.803804798414786 0.460972568062621 0.21500993 0.3232689 prediction 0.607609596829572 Functional Loss - RFC3 ENSG00000133119 CDS Human protein_coding chr13:34395330 chr13:34395333 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54032 0 0 1 0 2 Ribosome 0.500231643922171 0.500231643921096 0 2.14872564185953e-12 hm5C_site_49384 DeepMRMD:0;iRNA_m5C:2.14872564185953e-12 49385 chr14 100992335 100992335 1 + G T CESC 100992332 + 100992312 100992352 41 GCTGACCGCACCATTATTGCCTGGGATTTCCGGACCTCTGC GCTGACCGCACCATTATTGCCTGTGATTTCCGGACCTCTGC < 41bp 0.885217168456481 0.581419048177769 0.8883626 0.3636381 prediction 0.607596240557424 Functional Loss - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100992332 chr14:100992335 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54033 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921093 0.7767252 0 hm5C_site_49385 DeepMRMD:0.7767252;iRNA_m5C:0 49386 chr11 56128067 56128067 1 + G T LUSC 56128065 + 56128045 56128085 41 TTGTATCGGAGGTAATCATGCTGGCTTTGATGGCCTATGAC TTGTATCGGAGGTAATCATGCTTGCTTTGATGGCCTATGAC < 41bp 0.813574089689871 0.50978477471558 0.91942346 0.79515356 prediction 0.607578629948582 Functional Loss - OR8J1 ENSG00000172487 CDS Human protein_coding chr11:56128065 chr11:56128067 synonymous SNV . 0 23 hm5C_associated_SNPs_54034 0 0 0 0 0 unknown 0.500231643653465 0.500231643904639 0.2485398 0 hm5C_site_49386 DeepMRMD:0.2485398;iRNA_m5C:0 49387 chr16 50733722 50733722 1 + G T UCEC 50733719 + 50733699 50733739 41 CCCACTCGCTCCACCCAGCCCGAGACCTGCAGAGTCACCGG CCCACTCGCTCCACCCAGCCCGATACCTGCAGAGTCACCGG < 41bp 0.880098440920579 0.576316968776008 0.92414904 0.81863654 prediction 0.607562944289143 Functional Loss - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50733719 chr16:50733722 nonsynonymous SNV 0.601 4 24 hm5C_associated_SNPs_54035 0 0 0 0 0 exosome 0.500231643100004 0.500231643921092 0.211025 0 hm5C_site_49387 DeepMRMD:0.211025;iRNA_m5C:0 49388 chr12 49691311 49691311 1 + G T PAAD 49691308 + 49691288 49691328 41 TCCTCAACGTCAAGATGGCCCTGGACATCGAGATCGCCACC TCCTCAACGTCAAGATGGCCCTGTACATCGAGATCGCCACC < 41bp 0.878880025703996 0.575099898036606 0.28489548 0.121076286 prediction 0.607560255334779 Functional Loss - PRPH ENSG00000135406 CDS Human protein_coding chr12:49691308 chr12:49691311 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_54036 0 0 0 0 1 exosome 0.50023164923426 0.500231644183792 0 1.01009378639105e-08 hm5C_site_49388 DeepMRMD:0;iRNA_m5C:1.01009378639105e-08 49389 chr3 51981818 51981818 1 + G T STAD 51981815 + 51981795 51981835 41 TGTTCCTGGGTGAGGTGGCCCTGGGCAGAGAGCACCATATC TGTTCCTGGGTGAGGTGGCCCTGTGCAGAGAGCACCATATC < 41bp 0.885110719688402 0.581353655991955 0.48110947 0.24448866 prediction 0.607514127392893 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51981815 chr3:51981818 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_54037 0 0 0 0 2 nucleus 0.500231643921044 0.500231644011285 0 0 hm5C_site_49389 DeepMRMD:0;iRNA_m5C:0 49390 chr1 36755210 36755210 1 + G T COAD 36755208 + 36755188 36755228 41 TGACTGCTTATAAAGCAGTCCAGGAGAAAAGCTCATCACCT TGACTGCTTATAAAGCAGTCCATGAGAAAAGCTCATCACCT < 41bp 0.803757055825472 0.484475898074529 0.42403167 0.051683843 prediction 0.607514111650943 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36755208 chr1:36755210 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_54038 0 0 1 0 0 Nucleus 0.500231656620432 0.500231643920589 0 2.53996861321326e-08 hm5C_site_49390 DeepMRMD:0;iRNA_m5C:2.53996861321326e-08 49391 chr19 14038829 14038829 1 + G T rs56359259 14038827 + 14038807 14038847 41 GCTGGTCATTGACCCTGTGCCGGCAGCTGTGCCCACAGTGA GCTGGTCATTGACCCTGTGCCGTCAGCTGTGCCCACAGTGA < 41bp 0.817916048573849 0.514160701232212 0.8132782 0.25692213 prediction 0.607510694683275 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14038827 chr19:14038829 nonsynonymous SNV 0.242 0 23 hm5C_associated_SNPs_54039 2 0 1 0 1 chromatin 0.500231645595028 0.500231643727155 0.6265564 3.73574571277402e-09 hm5C_site_49391 DeepMRMD:0.6265564;iRNA_m5C:3.73574571277402e-09 not provided not provided 49392 chr14 59112477 59112477 1 + G T LUSC 59112475 + 59112455 59112495 41 AGGAACGGGAGCGTTTGTGTCAGAGCCCCGGGCGGTGTCTC AGGAACGGGAGCGTTTGTGTCATAGCCCCGGGCGGTGTCTC < 41bp 0.803751029978673 0.480193910923458 0.9423057 0.75407666 prediction 0.607502059957346 Functional Loss - DACT1 ENSG00000165617 CDS Human protein_coding chr14:59112475 chr14:59112477 nonsynonymous SNV 0.702 4 23 hm5C_associated_SNPs_54040 0 0 0 0 0 exosome 0.500231645702766 0.500231637238965 0.37645808 1.69276017647491e-08 hm5C_site_49392 DeepMRMD:0.37645808;iRNA_m5C:1.69276017647491e-08 49393 chr22 38046695 38046695 1 + C A rs12170939 38046697 - 38046677 38046717 41 GCTGAAGCCAAGGCTGGGGCCGGAGCTGGAGCTGGAGCCGG GCTGAAGCCAAGGCTGGGGCCGTAGCTGGAGCTGGAGCCGG < 41bp 0.831348775060859 0.52759954917717 0.9053447 0.8530403 prediction 0.607498451767378 Functional Loss - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046697 chr22:38046695 nonsynonymous SNV 0.024 1 23 hm5C_associated_SNPs_54041 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0.1046088 1.77635683940025e-15 hm5C_site_49393 DeepMRMD:0.1046088;iRNA_m5C:1.77635683940025e-15 49394 chr14 102028628 102028628 1 + G T LUAD 102028625 + 102028605 102028645 41 TTCGAGCGTCTCTATGTCATCCAGAGTGGCACTATTATGTA TTCGAGCGTCTCTATGTCATCCATAGTGGCACTATTATGTA < 41bp 0.803714925500555 0.445258034456895 0.15281868 0.061042905 prediction 0.60742985100111 Functional Loss - DIO3 ENSG00000197406 CDS Human protein_coding chr14:102028625 chr14:102028628 unknown 0.997 3 24 hm5C_associated_SNPs_54042 0 0 0 0 0 Endoplasmic reticulum 0.500231651977635 0.500231661484804 0 0 hm5C_site_49394 DeepMRMD:0;iRNA_m5C:0 49395 chr6 167755036 167755036 1 + G T KIRP 167755033 + 167755013 167755053 41 TGTCAGACCGTGGCAAAGCTCCAGATCCCCAAGCAGGCAAC TGTCAGACCGTGGCAAAGCTCCATATCCCCAAGCAGGCAAC < 41bp 0.803714142804474 0.423930831547872 0.5836528 0.20847845 prediction 0.607428285608947 Functional Loss - TTLL2 ENSG00000120440 CDS Human protein_coding chr6:167755033 chr6:167755036 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_54043 0 0 0 0 0 Exosome 0.500231358942207 0.500231631329982 0.1673056 0 hm5C_site_49395 DeepMRMD:0.1673056;iRNA_m5C:0 49396 chr1 207872577 207872577 1 + G T ESCA 207872575 + 207872555 207872595 41 TGCTAGTTACTGTGTTTTGGCTGGAATGGAAAGCCTTTGGA TGCTAGTTACTGTGTTTTGGCTTGAATGGAAAGCCTTTGGA < 41bp 0.810035628701307 0.506331600140585 0.12032637 0.04050061 prediction 0.607408057121445 Functional Loss - CR1L ENSG00000197721 CDS Human protein_coding chr1:207872575 chr1:207872577 stopgain 0.011 0 23 hm5C_associated_SNPs_54044 0 0 1 0 2 Endoplasmic reticulum 0.50023161653854 0.500231643881286 0 0 hm5C_site_49396 DeepMRMD:0;iRNA_m5C:0 49397 chr1 161179103 161179103 1 + G T UCEC 161179100 + 161179080 161179120 41 CTCCTCGGGCACAGTGGATCCGAGGTATGTCCCCCCAACTT CTCCTCGGGCACAGTGGATCCGATGTATGTCCCCCCAACTT < 41bp 0.887113019173692 0.583422371621872 0.91635 0.6517023 prediction 0.60738129510364 Functional Loss - NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161179100 chr1:161179103 nonsynonymous SNV 0.981 3 24 hm5C_associated_SNPs_54045 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921103 0.5292954 0 hm5C_site_49397 DeepMRMD:0.5292954;iRNA_m5C:0 49398 chr19 38774304 38774304 1 + G T KIRP 38774302 + 38774282 38774322 41 CGAAGGTGGTGGGCAGATGCCGGGCCTCCATGCCTAGGTGG CGAAGGTGGTGGGCAGATGCCGTGCCTCCATGCCTAGGTGG < 41bp 0.803689499340165 0.464819952126569 0.91779274 0.61765826 prediction 0.60737899868033 Functional Loss - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38774302 chr19:38774304 synonymous SNV . 0 23 hm5C_associated_SNPs_54046 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921093 0.60026896 0 hm5C_site_49398 DeepMRMD:0.60026896;iRNA_m5C:0 49399 chr15 45003799 45003799 1 + G T LUAD 45003796 + 45003776 45003816 41 CGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCAGCGTGAG CGCTACTCTCTCTTTCTGGCCTGTAGGCTATCCAGCGTGAG < 41bp 0.866011533667756 0.562323197290699 0.3164469 0.11106193 prediction 0.607376672754113 Functional Loss - B2M ENSG00000166710 CDS Human protein_coding chr15:45003796 chr15:45003799 stopgain 0.056 0 24 hm5C_associated_SNPs_54047 0 0 1 0 0 Ribosome 0.5002316463538 0.500231640074259 0 1.25590833288669e-08 hm5C_site_49399 DeepMRMD:0;iRNA_m5C:1.25590833288669e-08 49400 chr12 129431955 129431955 1 + G T LUAD 129431952 + 129431932 129431972 41 GCGGTGGTGAAGAATTGCTTCGCGGTGGTGAATAGCTCTGT GCGGTGGTGAAGAATTGCTTCGCTGTGGTGAATAGCTCTGT < 41bp 0.803673590544822 0.431832838620344 0.52165514 0.39424002 prediction 0.607347181089644 Functional Loss - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129431952 chr12:129431955 synonymous SNV . 0 24 hm5C_associated_SNPs_54048 0 0 0 1 2 Cytosol 0.500231643947909 0.500241712811978 0.04331028 0 hm5C_site_49400 DeepMRMD:0.04331028;iRNA_m5C:0 49401 chr8 56015652 56015652 1 + G T HNSC 56015650 + 56015630 56015670 41 GGTGGTCGGCGGTGGGTCTGCAGCCGGGGAAGGCGAGGCTC GGTGGTCGGCGGTGGGTCTGCATCCGGGGAAGGCGAGGCTC < 41bp 0.81517644796785 0.511514149739583 0.8168341 0.6998215 prediction 0.607324596456534 Functional Loss - XKR4 ENSG00000206579 CDS Human protein_coding chr8:56015650 chr8:56015652 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_54049 0 0 0 0 0 exosome 0.500231643921092 0.500231643921169 0.2340252 0 hm5C_site_49401 DeepMRMD:0.2340252;iRNA_m5C:0 49402 chr3 101443534 101443534 1 + G T rs201771736 101443531 + 101443511 101443551 41 AGCAGCAAATATGGCGGTGGCGCGCGTGGACGCGGCTTTGC AGCAGCAAATATGGCGGTGGCGCTCGTGGACGCGGCTTTGC < 41bp 0.866257651944072 0.562605767509022 0.8316958 0.2638604 prediction 0.607303768870102 Functional Loss - CEP97 ENSG00000182504 CDS Human protein_coding chr3:101443531 chr3:101443534 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_54050 0 0 1 0 1 Cytosol 0.500231643921096 0.500231643921092 0.6633916 8.88178419700125e-15 hm5C_site_49402 DeepMRMD:0.6633916;iRNA_m5C:8.88178419700125e-15 49403 chr20 2638632 2638632 1 + G T READ 2638629 + 2638609 2638649 41 AAAAGCCCCAGGAGGTTCCTCAGGAGAATGGAATGGAAGAC AAAAGCCCCAGGAGGTTCCTCAGTAGAATGGAATGGAAGAC < 41bp 0.87808144412184 0.574431281822241 0.90786564 0.47753972 prediction 0.607300324599197 Functional Loss - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2638629 chr20:2638632 stopgain 1.000 1 24 hm5C_associated_SNPs_54051 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921094 0.81573128 0 hm5C_site_49403 DeepMRMD:0.81573128;iRNA_m5C:0 49404 chr3 142522890 142522890 1 + G T BLCA 142522887 + 142522867 142522907 41 GCATGTGGCAATCTTTGTCACAAGATTTAGCTATGGAGAAG GCATGTGGCAATCTTTGTCACAATATTTAGCTATGGAGAAG < 41bp 0.803648757683653 0.447719546212126 0.86801994 0.72432846 prediction 0.607297515367306 Functional Loss - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142522887 chr3:142522890 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_54052 0 0 0 0 1 Ribosome 0.500231525776309 0.500231631241765 0.28738296 0 hm5C_site_49404 DeepMRMD:0.28738296;iRNA_m5C:0 49405 chr15 82574915 82574915 1 + G T LUAD 82574913 + 82574893 82574933 41 ACCTGAGGTCAAGAAAGTACCAGAGTATGTGCCTCCTACAG ACCTGAGGTCAAGAAAGTACCATAGTATGTGCCTCCTACAG < 41bp 0.831916359298068 0.528276390921405 0.8484347 0.25849044 prediction 0.607279936753326 Functional Loss - SAXO2 ENSG00000188659 CDS Human protein_coding chr15:82574913 chr15:82574915 stopgain 0.582 1 23 hm5C_associated_SNPs_54053 0 0 0 0 0 nucleus 0.500231643911866 0.500231643866328 0.6968694 9.10767017359149e-11 hm5C_site_49405 DeepMRMD:0.6968694;iRNA_m5C:9.10767017359149e-11 49406 chr19 48342588 48342588 1 + G T UCEC 48342585 + 48342565 48342605 41 CTTATCCCCCAGGTTTGGTTCAAGAACCGGAGGGCTAAATG CTTATCCCCCAGGTTTGGTTCAATAACCGGAGGGCTAAATG < 41bp 0.803638938774715 0.422342684619748 0.52335143 0.22614473 prediction 0.607277877549431 Functional Loss - CRX ENSG00000105392 CDS Human protein_coding chr19:48342585 chr19:48342588 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_54054 0 0 0 0 1 Nucleus 0.500231643921272 0.500231643921092 0.0467028599999999 3.59268170768701e-13 hm5C_site_49406 DeepMRMD:0.0467028599999999;iRNA_m5C:3.59268170768701e-13 49407 chr20 17950613 17950613 1 + G T SARC 17950611 + 17950591 17950631 41 CTTCCTCTTACTCATGTGGCCGGAAGAAAAAAGTGAACCCA CTTCCTCTTACTCATGTGGCCGTAAGAAAAAAGTGAACCCA < 41bp 0.803637013793928 0.483954277701284 0.4875956 0.16933051 prediction 0.607274027587855 Functional Loss - MGME1 ENSG00000125871 CDS Human protein_coding chr20:17950611 chr20:17950613 synonymous SNV . 0 23 hm5C_associated_SNPs_54055 0 0 1 0 0 chromatin 0.500231643921111 0.500231340145425 0 6.07551371434312e-07 hm5C_site_49407 DeepMRMD:0;iRNA_m5C:6.07551371434312e-07 49408 chr2 10188500 10188500 1 + G T UCEC 10188497 + 10188477 10188517 41 CTGTGATGTTGGTCCTGCCCCAGGGAGCCCTCCCTCCGCCT CTGTGATGTTGGTCCTGCCCCAGTGAGCCCTCCCTCCGCCT < 41bp 0.895142746278029 0.591507008877605 0.95047164 0.8166895 prediction 0.607271474800848 Functional Loss - KLF11 ENSG00000172059 CDS Human protein_coding chr2:10188497 chr2:10188500 stopgain 0.063 0 24 hm5C_associated_SNPs_54056 0 0 1 0 0 nucleoplasm 0.500231643921092 0.500231643921092 0.26756428 0 hm5C_site_49408 DeepMRMD:0.26756428;iRNA_m5C:0 49409 chr19 35757839 35757839 1 + A C SKCM 35757835 + 35757815 35757855 41 GCTGGCCAACTTCGACCCTTCTCGACCTGGCCCCCCCAGTG GCTGGCCAACTTCGACCCTTCTCGCCCTGGCCCCCCCAGTG < 41bp 0.903624462243715 0.599993255089872 0.2747411 0.09562558 prediction 0.607262414307686 Functional Loss - LSR ENSG00000105699 CDS Human protein_coding chr19:35757835 chr19:35757839 synonymous SNV . 0 25 hm5C_associated_SNPs_54057 0 0 1 0 2 chromatin 0.500231643923353 0.500231643926761 0 0 hm5C_site_49409 DeepMRMD:0;iRNA_m5C:0 49410 chr6 170201180 170201180 1 + A C UCEC 170201176 + 170201156 170201196 41 TGTGCTTGGTGGCCTGAGCACTGCAGTGAATCCATGTTTCC TGTGCTTGGTGGCCTGAGCACTGCCGTGAATCCATGTTTCC < 41bp 0.803630010749323 0.44499081615146 0.21140334 0.16329211 prediction 0.607260021498647 Functional Loss - LINC00574 ENSG00000231690 ncRNA_exonic Human lincRNA chr6:170201176 chr6:170201180 . . 0 25 hm5C_associated_SNPs_54058 0 0 1 0 0 unknown 0.500231643983409 0.500231643921095 0 1.24628085629297e-10 hm5C_site_49410 DeepMRMD:0;iRNA_m5C:1.24628085629297e-10 49411 chr19 44585277 44585277 1 + G T LUSC 44585275 + 44585255 44585295 41 GATGTCATGCTGGAGAACTTCAGAAACCTGCTATCAGTGGG GATGTCATGCTGGAGAACTTCATAAACCTGCTATCAGTGGG < 41bp 0.803626959492895 0.479556685999693 0.36307433 0.16060647 prediction 0.607253918985791 Functional Loss - ZNF284 ENSG00000186026 CDS Human protein_coding chr19:44585275 chr19:44585277 nonsynonymous SNV 0.944 3 23 hm5C_associated_SNPs_54059 0 0 1 0 1 exosome 0.500232864753661 0.50023256125097 0 6.07005382402548e-07 hm5C_site_49411 DeepMRMD:0;iRNA_m5C:6.07005382402548e-07 49412 chr9 32423379 32423379 1 + G T UCEC 32423376 + 32423356 32423396 41 TTCAGGCTGTAGGAATGTTTCGAGATTTCAATGACCCTTCT TTCAGGCTGTAGGAATGTTTCGATATTTCAATGACCCTTCT < 41bp 0.860460074914371 0.556833363224182 0.9038601 0.10964009 prediction 0.607253423380379 Functional Loss - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32423376 chr9:32423379 nonsynonymous SNV 0.990 3 24 hm5C_associated_SNPs_54060 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643936586 0.8077202 0 hm5C_site_49412 DeepMRMD:0.8077202;iRNA_m5C:0 49413 chr13 88329492 88329492 1 + G T LUAD 88329490 + 88329470 88329510 41 GCTGCTGTGCCCTGACTATTCAGATGTAGTAGTTTCCACGC GCTGCTGTGCCCTGACTATTCATATGTAGTAGTTTCCACGC < 41bp 0.840645801353447 0.53704228902489 0.921264 0.153045 prediction 0.607207024657114 Functional Loss - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88329490 chr13:88329492 nonsynonymous SNV 0.886 2 23 hm5C_associated_SNPs_54061 0 0 1 0 0 nucleus 0.500231643921092 0.500231643921092 0.842528 0 hm5C_site_49413 DeepMRMD:0.842528;iRNA_m5C:0 49414 chr1 147091170 147091170 1 + A C LGG 147091166 + 147091146 147091186 41 AGATGGGCCTCAGAAAAAACCAGAAGGGCCAATACAGGCCA AGATGGGCCTCAGAAAAAACCAGACGGGCCAATACAGGCCA < 41bp 0.803603203880159 0.404844466896952 0.8557787 0.8376867 prediction 0.607206407760319 Functional Loss - BCL9 ENSG00000116128 CDS Human protein_coding chr1:147091166 chr1:147091170 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_54062 0 0 0 0 0 Nucleus 0.5002316439133 0.500231643928047 0.036184 0 hm5C_site_49414 DeepMRMD:0.036184;iRNA_m5C:0 49415 chr4 69962319 69962319 1 + G T LGG 69962317 + 69962297 69962337 41 CTGGGAATTGTGGAAAGGTGCTGGTGTGGGCAGCAGAATAC CTGGGAATTGTGGAAAGGTGCTTGTGTGGGCAGCAGAATAC < 41bp 0.819906766590626 0.516312370661053 0.28069806 0.2021558 prediction 0.607188791859147 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69962317 chr4:69962319 synonymous SNV . 0 23 hm5C_associated_SNPs_54063 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921113 0 0 hm5C_site_49415 DeepMRMD:0;iRNA_m5C:0 49416 chr14 95111301 95111301 1 + G T HNSC 95111298 + 95111278 95111318 41 TTCTGTCTCTCCGCAGAGAACTCGATTTCCACTTCCCCAAA TTCTGTCTCTCCGCAGAGAACTCTATTTCCACTTCCCCAAA < 41bp 0.803589809012596 0.473501263855379 0.2753949 0.3532772 prediction 0.607179618025192 Functional Loss - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95111298 chr14:95111301 . . 0 24 hm5C_associated_SNPs_54064 0 0 0 0 1 unknown 0.500231643913843 0.500231643916697 0 0 hm5C_site_49416 DeepMRMD:0;iRNA_m5C:0 49417 chr4 88583147 88583147 1 + G T UCEC 88583145 + 88583125 88583165 41 CCCCAGTGACAGCACTCAGTCAGAGGAGGGCCTGGGCTCTG CCCCAGTGACAGCACTCAGTCATAGGAGGGCCTGGGCTCTG < 41bp 0.826068195303153 0.522500147439227 0.89844346 0.3521515 prediction 0.607136095727851 Functional Loss - DMP1 ENSG00000152592 CDS Human protein_coding chr4:88583145 chr4:88583147 stopgain 0.001 0 23 hm5C_associated_SNPs_54065 0 0 0 0 1 exosome 0.500231644008714 0.500231643941399 0.79688692 1.3462986281354e-10 hm5C_site_49417 DeepMRMD:0.79688692;iRNA_m5C:1.3462986281354e-10 49418 chr17 42430078 42430078 1 + G T HNSC 42430076 + 42430056 42430096 41 TGCTGTCCTGCTGGCTTCCGCTGCGCAGCCAGGGGTACCAA TGCTGTCCTGCTGGCTTCCGCTTCGCAGCCAGGGGTACCAA < 41bp 0.803565442205099 0.494404112265328 0.15144679 0.06679845 prediction 0.607130884410199 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42430076 chr17:42430078 nonsynonymous SNV 0.228 5 23 hm5C_associated_SNPs_54066 0 0 1 1 1 Endoplasmic reticulum 0.500231643921091 0.500231643921092 0 0 hm5C_site_49418 DeepMRMD:0;iRNA_m5C:0 49419 chrX 152226454 152226454 1 + G T LUSC 152226451 + 152226431 152226471 41 TAGGTCCAGATAGGGAGAGTCTGGAGGGGCTGGAAGTAGCC TAGGTCCAGATAGGGAGAGTCTGTAGGGGCTGGAAGTAGCC < 41bp 0.879744545382558 0.576186245749512 0.8380961 0.27285483 prediction 0.607116599266092 Functional Loss - PNMA3 ENSG00000183837 CDS Human protein_coding chrX:152226451 chrX:152226454 stopgain 0.127 0 24 hm5C_associated_SNPs_54067 0 0 0 0 0 exosome 0.500231643920411 0.500231643921092 0.6761922 0 hm5C_site_49419 DeepMRMD:0.6761922;iRNA_m5C:0 49420 chr8 19250999 19250999 1 + G T LIHC 19250996 + 19250976 19251016 41 CTGCAGACGCCTACAGCTTCCTGGGCGTGGACCAGCTACAG CTGCAGACGCCTACAGCTTCCTGTGCGTGGACCAGCTACAG < 41bp 0.803558006349423 0.430610173814397 0.3314517 0.09832087 prediction 0.607116012698846 Functional Loss - SH2D4A ENSG00000104611 CDS Human protein_coding chr8:19250996 chr8:19250999 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_54068 0 0 0 0 1 Nucleus 0.500210402020825 0.500147213582343 0 0.000126376876964152 hm5C_site_49420 DeepMRMD:0;iRNA_m5C:0.000126376876964152 49421 chr20 62843466 62843466 1 + A C UCEC 62843462 + 62843442 62843482 41 GGCTGCACAGGCCAGGGTCACGTGAACAGCAACCGCAACAC GGCTGCACAGGCCAGGGTCACGTGCACAGCAACCGCAACAC < 41bp 0.803548173444813 0.399538942015393 0.6919915 0.6176756 prediction 0.607096346889626 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62843462 chr20:62843466 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_54069 0 0 0 0 2 exosome 0.500231643960823 0.500231649765047 0.1486318 0 hm5C_site_49421 DeepMRMD:0.1486318;iRNA_m5C:0 49422 chr19 49378957 49378957 1 + G T GBM 49378955 + 49378935 49378975 41 CCCGCCAGGGCCCCTGGGAGCAGCTTGCTCGGGATCGCAGC CCCGCCAGGGCCCCTGGGAGCATCTTGCTCGGGATCGCAGC < 41bp 0.826951014425352 0.523410497036059 0.13893184 0.16843069 prediction 0.607081034778586 Functional Loss - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49378955 chr19:49378957 nonsynonymous SNV 0.617 3 23 hm5C_associated_SNPs_54070 0 0 1 0 1 Cytosol 0.500231643916997 0.500231643924095 0 0 hm5C_site_49422 DeepMRMD:0;iRNA_m5C:0 49423 chr6 148861604 148861604 1 + G T rs562076284 148861602 + 148861582 148861622 41 ACAGCGACCAGTCAGGATCCCAGGAGAAGCTGCTCGTTGAC ACAGCGACCAGTCAGGATCCCATGAGAAGCTGCTCGTTGAC < 41bp 0.842315635495715 0.538797106982762 0.915442 0.25167704 prediction 0.607037057025906 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148861602 chr6:148861604 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_54071 0 0 1 0 2 Cytosol 0.500232530287303 0.500231761295911 0.830884 1.53798278446082e-06 hm5C_site_49423 DeepMRMD:0.830884;iRNA_m5C:1.53798278446082e-06 49424 chr20 18534947 18534947 1 + G T rs7262532 18534945 + 18534925 18534965 41 ATGAAAACTTCAAGCACCTTCTGCAGGCACCACTGGATGAT ATGAAAACTTCAAGCACCTTCTTCAGGCACCACTGGATGAT < 41bp 0.803517196344785 0.497242302632467 0.07416916 0.038213223 prediction 0.607034392689571 Functional Loss - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18534945 chr20:18534947 synonymous SNV . 0 23 hm5C_associated_SNPs_54072 2 0 1 0 2 Cytosol 0.500231643921056 0.500231643921084 0 0 hm5C_site_49424 DeepMRMD:0;iRNA_m5C:0 not specified not specified 49425 chr6 153078261 153078261 1 + A C STAD 153078257 + 153078237 153078277 41 GGGAGAATCTCCCGACTTTCCAGAAGAGTTAGAAAAATGAT GGGAGAATCTCCCGACTTTCCAGACGAGTTAGAAAAATGAT < 41bp 0.803510195607531 0.436666239409511 0.39029273 0.7856447 prediction 0.607020391215061 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153078257 chr6:153078261 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_54073 0 0 0 0 3 exosome 0.500231643766073 0.500231643921094 0 0 hm5C_site_49425 DeepMRMD:0;iRNA_m5C:0 49426 chr19 1207078 1207078 1 + G T LUAD 1207075 + 1207055 1207095 41 AGTACCTGATGGGGGACCTGCTGGGGGAAGGCTCTTACGGC AGTACCTGATGGGGGACCTGCTGTGGGAAGGCTCTTACGGC < 41bp 0.879459117825025 0.575950223599063 0.89227974 0.22641936 prediction 0.607017788451925 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1207075 chr19:1207078 nonsynonymous SNV 0.899 4 24 hm5C_associated_SNPs_54074 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.78455948 0 hm5C_site_49426 DeepMRMD:0.78455948;iRNA_m5C:0 49427 chr12 72338170 72338170 1 + G T GBM 72338168 + 72338148 72338188 41 GGACTGTGAGTGTGGGAAAACAGAATTCAATGAGCTCATTC GGACTGTGAGTGTGGGAAAACATAATTCAATGAGCTCATTC < 41bp 0.813402955295384 0.509894391714133 0.099576324 0.12330648 prediction 0.607017127162502 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72338168 chr12:72338170 stopgain 0.999 1 23 hm5C_associated_SNPs_54075 0 0 0 0 1 exosome 0.500231643919437 0.500231490995848 0 3.0584717691795e-07 hm5C_site_49427 DeepMRMD:0;iRNA_m5C:3.0584717691795e-07 49428 chr11 55036774 55036774 1 + G T HNSC 55036771 + 55036751 55036791 41 TCTGAATCTAGCGCTCAGGGCAGGGCCCATCACTGGACTGA TCTGAATCTAGCGCTCAGGGCAGTGCCCATCACTGGACTGA < 41bp 0.803502634826966 0.420243411707287 0.41367978 0.12363136 prediction 0.607005269653931 Functional Loss - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55036771 chr11:55036774 nonsynonymous SNV 0.131 2 24 hm5C_associated_SNPs_54076 0 0 0 0 2 unknown 0.500231643921093 0.500231643192884 0 1.45641720905587e-09 hm5C_site_49428 DeepMRMD:0;iRNA_m5C:1.45641720905587e-09 49429 chr3 12531365 12531365 1 + A C rs62637658 12531361 + 12531341 12531381 41 AGTGTATGAGACTTACGAGTCTCCATTGCCAATCCCTTTTG AGTGTATGAGACTTACGAGTCTCCCTTGCCAATCCCTTTTG < 41bp 0.803481221805814 0.385290504872887 0.9517019 0.07390985 prediction 0.606962443611628 Functional Loss - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12531361 chr3:12531365 synonymous SNV . 0 25 hm5C_associated_SNPs_54077 2 0 1 0 1 Nucleus 0.500214285969231 0.500231888031837 0.9034038 0 hm5C_site_49429 DeepMRMD:0.9034038;iRNA_m5C:0 Pontocerebellar hypoplasia type 2B Pontocerebellar hypoplasia type 2B 49430 chr5 23527714 23527714 1 + G T LUAD 23527712 + 23527692 23527732 41 ATGTCTGCAGGGAGTGTGGGCGGGGCTTTCGCAATAAGTCA ATGTCTGCAGGGAGTGTGGGCGTGGCTTTCGCAATAAGTCA < 41bp 0.803469758232053 0.466005113633249 0.87960356 0.3467383 prediction 0.606939516464105 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23527712 chr5:23527714 synonymous SNV . 0 23 hm5C_associated_SNPs_54078 0 0 0 0 0 unknown 0.500231643921093 0.500231643920189 0.75920712 1.80744308408975e-12 hm5C_site_49430 DeepMRMD:0.75920712;iRNA_m5C:1.80744308408975e-12 49431 chr20 43530271 43530271 1 + G T GBM 43530269 + 43530249 43530289 41 TGCAGCCATGAAGGCAGTCACAGAACAGGGGCATGAACTCT TGCAGCCATGAAGGCAGTCACATAACAGGGGCATGAACTCT < 41bp 0.816133274724189 0.512664826795841 0.27716315 0.10558811 prediction 0.606936895856696 Functional Loss - YWHAB ENSG00000166913 CDS Human protein_coding chr20:43530269 chr20:43530271 stopgain 0.963 1 23 hm5C_associated_SNPs_54079 0 0 1 0 1 Ribosome 0.500231643921111 0.500231643894582 0 5.30566701684165e-11 hm5C_site_49431 DeepMRMD:0;iRNA_m5C:5.30566701684165e-11 49432 chrX 36089969 36089969 1 + G T UCEC 36089966 + 36089946 36089986 41 GGATGAATATCTTAAGAAGACTAGAGATGGTGTTTTGCCTC GGATGAATATCTTAAGAAGACTATAGATGGTGTTTTGCCTC < 41bp 0.865810070847958 0.562344272655585 0.37426 0.2854876 prediction 0.606931596384747 Functional Loss - CFAP47 ENSG00000176034 CDS Human other chrX:36089966 chrX:36089969 nonsynonymous SNV 0.012 1 24 hm5C_associated_SNPs_54080 0 0 0 0 1 cytosol 0.500231643985509 0.500231643921091 0 1.28835386803416e-10 hm5C_site_49432 DeepMRMD:0;iRNA_m5C:1.28835386803416e-10 49433 chr1 117303203 117303203 1 + G T PRAD 117303201 + 117303181 117303221 41 GAGTGCAAAATTCAAGTGCACAGCAGGGAACAAAGTCAGCA GAGTGCAAAATTCAAGTGCACATCAGGGAACAAAGTCAGCA < 41bp 0.80587898562987 0.502417948320364 0.088844776 0.040121973 prediction 0.606922074619012 Functional Loss - CD2 ENSG00000116824 CDS Human protein_coding chr1:117303201 chr1:117303203 nonsynonymous SNV 0.004 4 23 hm5C_associated_SNPs_54081 0 0 0 0 1 exosome 0.500240612448946 0.50023163019629 0 1.79645053131061e-05 hm5C_site_49433 DeepMRMD:0;iRNA_m5C:1.79645053131061e-05 49434 chr14 52186968 52186968 1 + G T LUAD 52186965 + 52186945 52186985 41 AGACACCAAGCCCCGGGACACGGGGCCAGAAGACAGCTACT AGACACCAAGCCCCGGGACACGGTGCCAGAAGACAGCTACT < 41bp 0.88293803539923 0.579494501756461 0.92482805 0.26089072 prediction 0.606887067285538 Functional Loss - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52186965 chr14:52186968 nonsynonymous SNV 0.288 1 24 hm5C_associated_SNPs_54082 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921796 0.8496561 0 hm5C_site_49434 DeepMRMD:0.8496561;iRNA_m5C:0 49435 chr7 100867114 100867114 1 + A C UCEC 100867110 + 100867090 100867130 41 CTGTGCGCTGTCTGGGGACCCACCAGGAGACCAGGTGAGCA CTGTGCGCTGTCTGGGGACCCACCCGGAGACCAGGTGAGCA < 41bp 0.901479167386838 0.598036255323955 0.54370075 0.19765839 prediction 0.606885824125767 Functional Loss - ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867110 chr7:100867114 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_54083 0 0 1 0 1 Cytosol 0.500231644302227 0.500231643920982 0.0874014999999999 7.62491403349941e-10 hm5C_site_49435 DeepMRMD:0.0874014999999999;iRNA_m5C:7.62491403349941e-10 49436 chr19 42396810 42396810 1 + G T LUSC 42396807 + 42396787 42396827 41 CGGCTCATGGGCATGACGCCCTGGGAGCAGGAGCTGGCCCA CGGCTCATGGGCATGACGCCCTGTGAGCAGGAGCTGGCCCA < 41bp 0.873408319066203 0.56997158852267 0.28532505 0.07268754 prediction 0.606873461087064 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42396807 chr19:42396810 stopgain 1.000 3 24 hm5C_associated_SNPs_54084 0 0 1 0 0 Cytosol 0.500231695206172 0.500231643646236 0 1.03119870420443e-07 hm5C_site_49436 DeepMRMD:0;iRNA_m5C:1.03119870420443e-07 49437 chrX 100364503 100364503 1 + G T UCEC 100364501 + 100364481 100364521 41 GATATTGAAGTGCATGATCCCAGCAACAGTAATATCAGAAG GATATTGAAGTGCATGATCCCATCAACAGTAATATCAGAAG < 41bp 0.81597287937394 0.512542042727918 0.26643407 0.07515234 prediction 0.606861673292043 Functional Loss - CENPI ENSG00000102384 CDS Human protein_coding chrX:100364501 chrX:100364503 nonsynonymous SNV 0.941 0 23 hm5C_associated_SNPs_54085 0 0 1 0 2 Nucleus 0.50023164001511 0.500231636021696 0 7.98682875391421e-09 hm5C_site_49437 DeepMRMD:0;iRNA_m5C:7.98682875391421e-09 49438 chr12 38710783 38710783 1 + G T KIRC 38710780 + 38710760 38710800 41 TCCTCTTCTCCGCCTTCAGCCGGGCGCTGCGAGAGCCCTAC TCCTCTTCTCCGCCTTCAGCCGGTCGCTGCGAGAGCCCTAC < 41bp 0.803428313983059 0.454277912573309 0.91228104 0.31697208 prediction 0.606856627966117 Functional Loss - ALG10B ENSG00000175548 CDS Human protein_coding chr12:38710780 chr12:38710783 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_54086 0 0 1 0 1 Nucleus 0.500231643846964 0.500231643215157 0.82456208 1.26361343610881e-09 hm5C_site_49438 DeepMRMD:0.82456208;iRNA_m5C:1.26361343610881e-09 49439 chr5 140710791 140710791 1 + G T LUAD 140710789 + 140710769 140710809 41 GCTCTAACCCTCATTTCTCCCTGGATGTGCAACAGGGAGCC GCTCTAACCCTCATTTCTCCCTTGATGTGCAACAGGGAGCC < 41bp 0.803421736304682 0.484243708668366 0.2370606 0.05790612 prediction 0.606843472609365 Functional Loss - PCDHGA1 ENSG00000204956 CDS Human protein_coding chr5:140710789 chr5:140710791 synonymous SNV . 0 23 hm5C_associated_SNPs_54087 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_49439 DeepMRMD:0;iRNA_m5C:0 49440 chr4 83375922 83375922 1 + G T LUSC 83375919 + 83375899 83375939 41 AGTCAGGAAGTGGAGAGAGGCCGGAATGAAGGTGTACATCT AGTCAGGAAGTGGAGAGAGGCCGTAATGAAGGTGTACATCT < 41bp 0.875019463773908 0.571601608723068 0.32912982 0.118694216 prediction 0.606835710101681 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83375919 chr4:83375922 nonsynonymous SNV 0.796 4 24 hm5C_associated_SNPs_54088 0 0 1 0 2 Ribosome 0.500231662822275 0.500231003233007 0 1.31917853574137e-06 hm5C_site_49440 DeepMRMD:0;iRNA_m5C:1.31917853574137e-06 49441 chr10 5966383 5966383 1 + G T UCEC 5966380 + 5966360 5966400 41 GAGGACAAGGAGCTTGAAGCCAAGATCGCAGTTGTTGAAAA GAGGACAAGGAGCTTGAAGCCAATATCGCAGTTGTTGAAAA < 41bp 0.803411647022732 0.436394057069931 0.10961375 0.040287137 prediction 0.606823294045464 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5966380 chr10:5966383 nonsynonymous SNV 0.856 3 24 hm5C_associated_SNPs_54089 0 0 1 0 1 Ribosome 0.500231957704354 0.500231638469117 0 6.38470474489949e-07 hm5C_site_49441 DeepMRMD:0;iRNA_m5C:6.38470474489949e-07 49442 chr11 126213306 126213306 1 + G T LUSC 126213304 + 126213284 126213324 41 TGCTCAGGAACATCCTCCACCAGGGGCAGGTGAGTGGCTTC TGCTCAGGAACATCCTCCACCATGGGCAGGTGAGTGGCTTC < 41bp 0.803398457381082 0.467930029571016 0.924543 0.078285664 prediction 0.606796914762163 Functional Loss - DCPS ENSG00000110063 CDS Human protein_coding chr11:126213304 chr11:126213306 nonsynonymous SNV 0.870 3 23 hm5C_associated_SNPs_54090 0 0 0 0 1 Ribosome 0.500231643921095 0.500231645007564 0.849086 0 hm5C_site_49442 DeepMRMD:0.849086;iRNA_m5C:0 49443 chr4 3419254 3419254 1 + G T LUAD 3419252 + 3419232 3419272 41 TCCCAGAAAAAGAGGGAGCACGGGGACCACGCAGACGGTTT TCCCAGAAAAAGAGGGAGCACGTGGACCACGCAGACGGTTT < 41bp 0.803395792227859 0.49619092739294 0.89284885 0.6524347 prediction 0.606791584455719 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3419252 chr4:3419254 nonsynonymous SNV 0.467 2 23 hm5C_associated_SNPs_54091 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921093 0.4808283 0 hm5C_site_49443 DeepMRMD:0.4808283;iRNA_m5C:0 49444 chr19 757449 757449 1 + G T CESC 757447 + 757427 757467 41 CTCCAGGGCACTCCTGACCACGGAGACCCCAGGACCCCCGG CTCCAGGGCACTCCTGACCACGTAGACCCCAGGACCCCCGG < 41bp 0.80339216399657 0.467570462024696 0.88636225 0.33826545 prediction 0.60678432799314 Functional Loss - MISP ENSG00000099812 CDS Human protein_coding chr19:757447 chr19:757449 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_54092 0 0 0 0 0 nucleus 0.500231643921084 0.5002316439211 0.7727245 0 hm5C_site_49444 DeepMRMD:0.7727245;iRNA_m5C:0 49445 chr19 590577 590577 1 + G T UCEC 590575 + 590555 590595 41 ATCCACCCGTACAGCGACTTCAGGTACCGCCTCCGGGAGGG ATCCACCCGTACAGCGACTTCATGTACCGCCTCCGGGAGGG < 41bp 0.823763297137461 0.52038280593073 0.4681951 0.21995392 prediction 0.606760982413462 Functional Loss - HCN2 ENSG00000099822 CDS Human protein_coding chr19:590575 chr19:590577 nonsynonymous SNV 0.938 3 23 hm5C_associated_SNPs_54093 0 0 0 0 1 chromatin 0.500231601180934 0.500231643907603 0 0 hm5C_site_49445 DeepMRMD:0;iRNA_m5C:0 49446 chr5 170736451 170736451 1 + G T LUAD 170736448 + 170736428 170736468 41 TCGACCAGATCCTTAACAGCCCGGACCAGGACAGCGCACCC TCGACCAGATCCTTAACAGCCCGTACCAGGACAGCGCACCC < 41bp 0.863775154914573 0.560416932503101 0.10934016 0.02175349 prediction 0.606716444822946 Functional Loss - TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736448 chr5:170736451 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_54094 0 0 1 0 0 exosome 0.500231643921104 0.500231542966187 0 2.01909834851577e-07 hm5C_site_49446 DeepMRMD:0;iRNA_m5C:2.01909834851577e-07 49447 chr3 14799105 14799105 1 + G T UCEC 14799103 + 14799083 14799123 41 ATCTCAAGCCAGAACTACACCAGCACTGGGCAGCTCCAGTG ATCTCAAGCCAGAACTACACCATCACTGGGCAGCTCCAGTG < 41bp 0.803354019976792 0.481784226790649 0.22377545 0.047189444 prediction 0.606708039953583 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14799103 chr3:14799105 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_54095 0 0 0 0 1 nucleoplasm 0.500231643921158 0.500231643923704 0 0 hm5C_site_49447 DeepMRMD:0;iRNA_m5C:0 49448 chr19 58849788 58849788 1 + G T LUAD 58849785 + 58849765 58849805 41 CTCAGAGAGGTCTGGACTATCAGGGGAGATCTGGACAAAGT CTCAGAGAGGTCTGGACTATCAGTGGAGATCTGGACAAAGT < 41bp 0.877217262626169 0.573876340310263 0.9465539 0.82521904 prediction 0.606681844631812 Functional Loss - ZSCAN22 ENSG00000182318 CDS Human protein_coding chr19:58849785 chr19:58849788 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_54096 0 0 1 0 0 Cytosol 0.500231644455501 0.500231673582488 0.24266972 0 hm5C_site_49448 DeepMRMD:0.24266972;iRNA_m5C:0 49449 chr1 3389979 3389979 1 + G T SKCM 3389976 + 3389956 3389996 41 GAAGCAGCAACGCCGCCTTCCGAGAGGCCCTGAGAGAGATT GAAGCAGCAACGCCGCCTTCCGATAGGCCCTGAGAGAGATT < 41bp 0.803339774739296 0.429350778837821 0.8592682 0.061642855 prediction 0.606679549478593 Functional Loss - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3389976 chr1:3389979 stopgain 0.005 0 24 hm5C_associated_SNPs_54097 0 0 0 0 1 Ribosome 0.500231643921345 0.500231643918745 0.7185364 5.19828624589991e-12 hm5C_site_49449 DeepMRMD:0.7185364;iRNA_m5C:5.19828624589991e-12 49450 chr5 121487992 121487992 1 + G T UCEC 121487989 + 121487969 121488009 41 GGGTATGCTATATCTGTGGCCGAGAATTTGGGTCCCAGTCA GGGTATGCTATATCTGTGGCCGATAATTTGGGTCCCAGTCA < 41bp 0.885545622017542 0.582209965998966 0.5772564 0.1476137 prediction 0.606671312037152 Functional Loss - ZNF474 ENSG00000164185 CDS Human protein_coding chr5:121487989 chr5:121487992 stopgain 0.998 1 24 hm5C_associated_SNPs_54098 0 0 0 0 0 membrane 0.500230154780836 0.500231643921098 0.1545128 0 hm5C_site_49450 DeepMRMD:0.1545128;iRNA_m5C:0 49451 chr11 6262815 6262815 1 + G T LUAD 6262812 + 6262792 6262832 41 AGAACTGTGAGGCCAGCCTGCTGGAGGAGCTGGTGCTGAAG AGAACTGTGAGGCCAGCCTGCTGTAGGAGCTGGTGCTGAAG < 41bp 0.885956753810464 0.582628000177227 0.7048057 0.17500812 prediction 0.606657507266475 Functional Loss - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6262812 chr11:6262815 stopgain 1.000 1 24 hm5C_associated_SNPs_54099 0 0 0 0 0 exosome 0.500231643918983 0.500231643921092 0.4096114 0 hm5C_site_49451 DeepMRMD:0.4096114;iRNA_m5C:0 49452 chr4 88537349 88537349 1 + A C rs201659235 88537345 + 88537325 88537365 41 AGCAGCGATAGCAGTGACAGCAGCAATAGCAGTGATAGCAG AGCAGCGATAGCAGTGACAGCAGCCATAGCAGTGATAGCAG < 41bp 0.803324874453713 0.440367316259928 0.1461196 0.27810222 prediction 0.606649748907426 Functional Loss - DSPP ENSG00000152591 CDS Human protein_coding chr4:88537345 chr4:88537349 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_54100 0 0 0 0 0 exosome 0.500174080299008 0.500231416602779 0 0 hm5C_site_49452 DeepMRMD:0;iRNA_m5C:0 49453 chr11 48266895 48266895 1 + A C STAD 48266891 + 48266871 48266911 41 ACTCATCTCAGATCTGCTGGCTGAAAGGAAAGTCATATCTT ACTCATCTCAGATCTGCTGGCTGACAGGAAAGTCATATCTT < 41bp 0.803318096101312 0.432747069482831 0.24407667 0.17639056 prediction 0.606636192202624 Functional Loss - OR4X2 ENSG00000172208 CDS Human polymorphic_pseudogene chr11:48266891 chr11:48266895 nonsynonymous SNV 0.021 0 25 hm5C_associated_SNPs_54101 0 0 0 0 0 unknown 0.500231643283617 0.500231643802163 0 0 hm5C_site_49453 DeepMRMD:0;iRNA_m5C:0 49454 chr17 41166192 41166192 1 + A C UCEC 41166188 + 41166168 41166208 41 TTCCTGATATCTTGGATGGCCCGGAGCTGCATGACGTCCTG TTCCTGATATCTTGGATGGCCCGGCGCTGCATGACGTCCTG < 41bp 0.875267861309567 0.571952801845802 0.35891348 0.23835519 prediction 0.606630118927531 Functional Loss - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41166188 chr17:41166192 nonsynonymous SNV 0.268 1 25 hm5C_associated_SNPs_54102 0 0 1 0 1 Cytosol 0.500145771367736 0.500206265969571 0 0 hm5C_site_49454 DeepMRMD:0;iRNA_m5C:0 49455 chr12 7463241 7463241 1 + A T rs7968241 7463237 + 7463217 7463257 41 TGTGGCCAGTGAGGAGGTGGCCCCAGCGGTGGAGTCCATTG TGTGGCCAGTGAGGAGGTGGCCCCTGCGGTGGAGTCCATTG < 41bp 0.82359749020655 0.520283681002145 0.48694548 0.27758437 prediction 0.606627618408809 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7463237 chr12:7463241 synonymous SNV . 0 25 hm5C_associated_SNPs_54103 0 0 0 0 0 exosome 0.500231643921102 0.500231643921092 0 1.97619698383278e-14 hm5C_site_49455 DeepMRMD:0;iRNA_m5C:1.97619698383278e-14 49456 chr16 66997183 66997183 1 + G T UCEC 66997180 + 66997160 66997200 41 ACCGCCTTGTGAATGTCTTTCTGGGCATTCCATTTGCCCAG ACCGCCTTGTGAATGTCTTTCTGTGCATTCCATTTGCCCAG < 41bp 0.896326997141236 0.593015983999824 0.44939935 0.35931554 prediction 0.606622026282825 Functional Loss - CES3 ENSG00000172828 CDS Human protein_coding chr16:66997180 chr16:66997183 nonsynonymous SNV 0.954 3 24 hm5C_associated_SNPs_54104 0 0 0 0 0 nucleolus 0.500231643921093 0.5002316439193 0 3.58491014651463e-12 hm5C_site_49456 DeepMRMD:0;iRNA_m5C:3.58491014651463e-12 49457 chr17 80320348 80320348 1 + G T LUAD 80320346 + 80320326 80320366 41 AGGGACCCTGGCAGCAGCCCCAGAAGGGTTGGAAGATGCAG AGGGACCCTGGCAGCAGCCCCATAAGGGTTGGAAGATGCAG < 41bp 0.828305190064737 0.52499534445008 0.40268987 0.3321432 prediction 0.606619691229313 Functional Loss - TEX19 ENSG00000182459 CDS Human protein_coding chr17:80320346 chr17:80320348 stopgain 0.001 0 23 hm5C_associated_SNPs_54105 0 0 0 0 0 exosome 0.500231643921052 0.5002316487688 0 0 hm5C_site_49457 DeepMRMD:0;iRNA_m5C:0 49458 chr4 94750936 94750936 1 + G T LUAD 94750934 + 94750914 94750954 41 AGCTTCTGCGGGAGGGTACTCGGTGCAGCTGGACGCTCTGC AGCTTCTGCGGGAGGGTACTCGTTGCAGCTGGACGCTCTGC < 41bp 0.828417398603992 0.525109109354565 0.9110955 0.5418983 prediction 0.606616578498853 Functional Loss - ATOH1 ENSG00000172238 CDS Human protein_coding chr4:94750934 chr4:94750936 nonsynonymous SNV 0.985 3 23 hm5C_associated_SNPs_54106 0 0 0 0 0 unknown 0.500231643921093 0.500231644147165 0.7383944 0 hm5C_site_49458 DeepMRMD:0.7383944;iRNA_m5C:0 49459 chr20 55909095 55909095 1 + A C rs148234267 55909091 + 55909071 55909111 41 TTTGGTAACCAGACTGTCGTCGACAATATTATCAATGACAT TTTGGTAACCAGACTGTCGTCGACCATATTATCAATGACAT < 41bp 0.803297992156688 0.409734768203142 0.06275123 0.038099766 prediction 0.606595984313377 Functional Loss - SPO11 ENSG00000054796 CDS Human protein_coding chr20:55909091 chr20:55909095 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_54107 0 0 0 0 2 unknown 0.500233613204706 0.500231643921087 0 3.93856723812647e-06 hm5C_site_49459 DeepMRMD:0;iRNA_m5C:3.93856723812647e-06 49460 chr11 66188689 66188689 1 + G T LUAD 66188687 + 66188667 66188707 41 AGGGCGCCTCCAAGGCGCGCCGGGACCAGATCAACGCCGAG AGGGCGCCTCCAAGGCGCGCCGTGACCAGATCAACGCCGAG < 41bp 0.842047084327691 0.538750413353328 0.75322133 0.070233196 prediction 0.606593341948727 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66188687 chr11:66188689 synonymous SNV . 0 23 hm5C_associated_SNPs_54108 0 0 0 0 0 unknown 0.500231643921092 0.500231643893736 0.50644266 5.47111245197129e-11 hm5C_site_49460 DeepMRMD:0.50644266;iRNA_m5C:5.47111245197129e-11 49461 chr19 40199934 40199934 1 + G T LUAD 40199932 + 40199912 40199952 41 TTCAGAGATATCTCCCTGACCAGAGTGCTTATCAGCGATTG TTCAGAGATATCTCCCTGACCATAGTGCTTATCAGCGATTG < 41bp 0.803292918537766 0.489251231930528 0.39437896 0.053664356 prediction 0.606585837075533 Functional Loss - LGALS14 ENSG00000006659 CDS Human protein_coding chr19:40199932 chr19:40199934 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_54109 0 0 0 0 1 exosome 0.500231643889638 0.500231643921902 0 0 hm5C_site_49461 DeepMRMD:0;iRNA_m5C:0 49462 chr13 54448570 54448570 1 + G T rs145421318 54448567 + 54448547 54448587 41 AGGTGGTTGCCTGTGATTCCCTGGAATGCATAATCCCACAA AGGTGGTTGCCTGTGATTCCCTGTAATGCATAATCCCACAA < 41bp 0.835007655072976 0.531715993894458 0.35209116 0.09595737 prediction 0.606583322357035 Functional Loss - LINC00558 ENSG00000261517 ncRNA_exonic Human lincRNA chr13:54448567 chr13:54448570 . . 0 24 hm5C_associated_SNPs_54110 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_49462 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 49463 chr8 99102020 99102020 1 + G T UCEC 99102017 + 99101997 99102037 41 AAGAGGAGCAGCCCCAGCTTCTAGAAAGAATTCCCAAAGAG AAGAGGAGCAGCCCCAGCTTCTATAAAGAATTCCCAAAGAG < 41bp 0.803287402324688 0.445081747467931 0.3132956 0.43454385 prediction 0.606574804649376 Functional Loss - ERICH5 ENSG00000177459 CDS Human protein_coding chr8:99102017 chr8:99102020 stopgain 0.947 0 24 hm5C_associated_SNPs_54111 0 0 0 0 0 exosome 0.500231643921092 0.500231643921101 0 0 hm5C_site_49463 DeepMRMD:0;iRNA_m5C:0 49464 chr15 67813876 67813876 1 + G T UCEC 67813874 + 67813854 67813894 41 TACCACTGCTCCAAGGCTCCCTGGCAGGACCTGGCCCGGCA TACCACTGCTCCAAGGCTCCCTTGCAGGACCTGGCCCGGCA < 41bp 0.803284282352635 0.47754131131336 0.055452317 0.015244395 prediction 0.606568564705271 Functional Loss - C15orf61 ENSG00000189227 CDS Human protein_coding chr15:67813874 chr15:67813876 nonsynonymous SNV 0.948 0 23 hm5C_associated_SNPs_54112 0 0 1 0 1 Ribosome 0.500231643920924 0.500231643921092 0 0 hm5C_site_49464 DeepMRMD:0;iRNA_m5C:0 49465 chrX 86877360 86877360 1 + G T HNSC 86877358 + 86877338 86877378 41 AGTGGGTGGGGCATGATGTGCAGAATAGGCAAGGAGAACTG AGTGGGTGGGGCATGATGTGCATAATAGGCAAGGAGAACTG < 41bp 0.823981865036566 0.520708267733438 0.12145758 0.11060271 prediction 0.606547194606257 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86877358 chrX:86877360 nonsynonymous SNV 0.952 1 23 hm5C_associated_SNPs_54113 0 0 0 0 1 chromatin 0.500231643928382 0.500231537940464 0 2.11975836883482e-07 hm5C_site_49465 DeepMRMD:0;iRNA_m5C:2.11975836883482e-07 49466 chr3 167510457 167510457 1 + G T LUAD 167510454 + 167510434 167510474 41 CTCATTAATGCTGTCTATTTCAAGGGGAACTGGAAGTCGCA CTCATTAATGCTGTCTATTTCAATGGGAACTGGAAGTCGCA < 41bp 0.80326764781923 0.43280506017554 0.9417286 0.6462035 prediction 0.60653529563846 Functional Loss - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167510454 chr3:167510457 nonsynonymous SNV 0.982 4 24 hm5C_associated_SNPs_54114 0 0 0 0 1 Endoplasmic reticulum 0.500231643920243 0.500231562530576 0.5910502 1.62779332679719e-07 hm5C_site_49466 DeepMRMD:0.5910502;iRNA_m5C:1.62779332679719e-07 49467 chr12 130648758 130648758 1 + G T LUAD 130648756 + 130648736 130648776 41 TTCGTGGCCCTGTTCCACATCCGGAGGGTGATGAAGACGGG TTCGTGGCCCTGTTCCACATCCTGAGGGTGATGAAGACGGG < 41bp 0.803261023715269 0.489120952382955 0.85568726 0.2902574 prediction 0.606522047430539 Functional Loss - FZD10 ENSG00000111432 CDS Human protein_coding chr12:130648756 chr12:130648758 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_54115 0 0 0 0 0 exosome 0.500231376987451 0.500231643383584 0.71137452 0 hm5C_site_49467 DeepMRMD:0.71137452;iRNA_m5C:0 49468 chr2 228137806 228137806 1 + G T COAD 228137804 + 228137784 228137824 41 CCAGGGCACGCAAGGAGTTCCTGGAGCCCCCGGACCACCCG CCAGGGCACGCAAGGAGTTCCTTGAGCCCCCGGACCACCCG < 41bp 0.825091063851828 0.521846239437552 0.64337647 0.23097664 prediction 0.606489648828552 Functional Loss - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228137804 chr2:228137806 stopgain 0.651 1 23 hm5C_associated_SNPs_54116 0 0 0 0 1 nucleus 0.50023165885733 0.500231644048137 0.28675294 2.96183859660459e-08 hm5C_site_49468 DeepMRMD:0.28675294;iRNA_m5C:2.96183859660459e-08 49469 chr12 125509742 125509742 1 + G T LUSC 125509740 + 125509720 125509760 41 CCATGTCCTGCGTGTACATCCTGCACAAGTACGAGGGCGAG CCATGTCCTGCGTGTACATCCTTCACAAGTACGAGGGCGAG < 41bp 0.8066062120203 0.50336310059005 0.16395575 0.23744792 prediction 0.6064862228605 Functional Loss - BRI3BP ENSG00000184992 CDS Human protein_coding chr12:125509740 chr12:125509742 synonymous SNV . 0 23 hm5C_associated_SNPs_54117 0 0 1 0 0 Ribosome 0.500231769426208 0.500231643923426 0 2.51005564111395e-07 hm5C_site_49469 DeepMRMD:0;iRNA_m5C:2.51005564111395e-07 49470 chr6 96034537 96034537 1 + G T SKCM 96034534 + 96034514 96034554 41 ATCAACAGTGAAACAAATACCAAGAATTTAAAAAGTGTTGA ATCAACAGTGAAACAAATACCAATAATTTAAAAAGTGTTGA < 41bp 0.805069972708748 0.501827322290427 0.09680027 0.26964593 prediction 0.606485300836642 Functional Loss - MANEA ENSG00000172469 CDS Human protein_coding chr6:96034534 chr6:96034537 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_54118 0 0 0 0 0 Ribosome 0.500268011868411 0.500231148566675 0 7.37266034722683e-05 hm5C_site_49470 DeepMRMD:0;iRNA_m5C:7.37266034722683e-05 49471 chr3 100455465 100455465 1 + G T UCEC 100455463 + 100455443 100455483 41 GATCGTTCAGGAACACCCGACAGCATTGCTTCCTCCTCCTC GATCGTTCAGGAACACCCGACATCATTGCTTCCTCCTCCTC < 41bp 0.82864994529783 0.5254149765522 0.2838214 0.22235325 prediction 0.60646993749126 Functional Loss - TFG ENSG00000114354 CDS Human protein_coding chr3:100455463 chr3:100455465 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54119 0 0 1 0 3 Cytosol 0.500232409090558 0.50023164509125 0 1.52799861563579e-06 hm5C_site_49471 DeepMRMD:0;iRNA_m5C:1.52799861563579e-06 49472 chrX 86773124 86773124 1 + A T UCEC 86773120 + 86773100 86773140 41 TGTCCACCACAATATACTGGCACCAGTGCCAGGACCGGCCC TGTCCACCACAATATACTGGCACCTGTGCCAGGACCGGCCC < 41bp 0.818742151848644 0.515510735642965 0.17732966 0.10881597 prediction 0.606462832411359 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86773120 chrX:86773124 synonymous SNV . 0 25 hm5C_associated_SNPs_54120 0 0 0 0 0 chromatin 0.500231643917003 0.500231643871214 0 9.15783004984405e-11 hm5C_site_49472 DeepMRMD:0;iRNA_m5C:9.15783004984405e-11 49473 chr6 28500111 28500111 1 + G T SKCM 28500109 + 28500089 28500129 41 TTGTTGCAGGTATGTCCGTCCAGGGGGAGGATTTGTACCTA TTGTTGCAGGTATGTCCGTCCATGGGGAGGATTTGTACCTA < 41bp 0.803229730720246 0.487104974273911 0.8869165 0.7826953 prediction 0.606459461440492 Functional Loss - GPX5 ENSG00000224586 CDS Human protein_coding chr6:28500109 chr6:28500111 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_54121 0 0 0 0 2 unknown 0.500231643891994 0.500231643921345 0.2084424 0 hm5C_site_49473 DeepMRMD:0.2084424;iRNA_m5C:0 49474 chr9 97321313 97321313 1 + C A PAAD 97321316 - 97321296 97321336 41 CCTGTACTGGACGTGAAGCCCGAGGCAATTCACCAGCGAGT CCTGTACTGGACGTGAAGCCCGATGCAATTCACCAGCGAGT < 41bp 0.883798576832513 0.580570325491635 0.8740451 0.3697971 prediction 0.606456502681755 Functional Loss - FBP2 ENSG00000130957 CDS Human protein_coding chr9:97321316 chr9:97321313 nonsynonymous SNV 0.262 1 24 hm5C_associated_SNPs_54122 0 0 0 0 0 exosome 0.50023164392162 0.500229516702406 0.7480902 4.25443842688722e-06 hm5C_site_49474 DeepMRMD:0.7480902;iRNA_m5C:4.25443842688722e-06 49475 chr4 106640462 106640462 1 + G T PAAD 106640460 + 106640440 106640480 41 CAAAGAGCAAGGTCCACACACAGGAAACATCTGAAGGGTTG CAAAGAGCAAGGTCCACACACATGAAACATCTGAAGGGTTG < 41bp 0.825151498299404 0.52192402060291 0.8988223 0.8679304 prediction 0.606454955392989 Functional Loss - GSTCD ENSG00000138780 CDS Human protein_coding chr4:106640460 chr4:106640462 nonsynonymous SNV 0.022 0 23 hm5C_associated_SNPs_54123 0 0 1 0 0 Ribosome 0.500231433064606 0.50023164130583 0.0617837999999999 0 hm5C_site_49475 DeepMRMD:0.0617837999999999;iRNA_m5C:0 49476 chr1 109271508 109271508 1 + G T LUSC 109271506 + 109271486 109271526 41 CTACAGTGTGCCCCTGGAAACAGGTATGTAGCAACCACCAG CTACAGTGTGCCCCTGGAAACATGTATGTAGCAACCACCAG < 41bp 0.835246605457138 0.532021953904669 0.7627312 0.29763168 prediction 0.606449303104938 Functional Loss - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109271506 chr1:109271508 nonsynonymous SNV 0.263 1 23 hm5C_associated_SNPs_54124 0 0 0 0 1 exosome 0.500231643921053 0.500231643514048 0.5254624 8.14010414629251e-10 hm5C_site_49476 DeepMRMD:0.5254624;iRNA_m5C:8.14010414629251e-10 49477 chrX 7812003 7812003 1 + G T UCEC 7812001 + 7811981 7812021 41 AACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCACCGAGT AACCACTGAGTCAGGAGAGCCATGTGGAGGAACCACCGAGT < 41bp 0.803223799760325 0.48286722289684 0.9008343 0.6509707 prediction 0.606447599520651 Functional Loss - VCX ENSG00000182583 CDS Human protein_coding chrX:7812001 chrX:7812003 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_54125 0 0 0 0 0 unknown 0.500232379074223 0.500231644402865 0.4997272 1.46934271483268e-06 hm5C_site_49477 DeepMRMD:0.4997272;iRNA_m5C:1.46934271483268e-06 49478 chr1 159410019 159410019 1 + G T CESC 159410017 + 159409997 159410037 41 GGCTGCGTATCCAACTTGTCCTGGGGGCCTGCAGCATTGGG GGCTGCGTATCCAACTTGTCCTTGGGGCCTGCAGCATTGGG < 41bp 0.825491900014732 0.522278198994383 0.117559016 0.038633585 prediction 0.606427402040698 Functional Loss - OR10J1 ENSG00000196184 CDS Human protein_coding chr1:159410017 chr1:159410019 synonymous SNV . 0 23 hm5C_associated_SNPs_54126 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_49478 DeepMRMD:0;iRNA_m5C:0 49479 chr3 25831594 25831594 1 + A C rs41285081 25831590 + 25831570 25831610 41 TGTGCGCGTGCGCTCGAGAGCGTCATCGCCCCCGACTGTGG TGTGCGCGTGCGCTCGAGAGCGTCCTCGCCCCCGACTGTGG < 41bp 0.846934460795828 0.543724739717846 0.027879685 0.020910025 prediction 0.606419442155965 Functional Loss - OXSM ENSG00000151093 UTR5 Human protein_coding chr3:25831590 chr3:25831594 . . 0 25 hm5C_associated_SNPs_54127 0 0 1 0 1 Ribosome 0.500253061032965 0.500231643421575 0 4.28352227797024e-05 hm5C_site_49479 DeepMRMD:0;iRNA_m5C:4.28352227797024e-05 49480 chr6 27100998 27100998 1 + G T BLCA 27100995 + 27100975 27101015 41 AGCGGGTCGGGGCCGGCGCGCCGGTGTATCTGGCAGCGGTG AGCGGGTCGGGGCCGGCGCGCCGTTGTATCTGGCAGCGGTG < 41bp 0.803209385520607 0.429020797967537 0.7606342 0.19623724 prediction 0.606418771041214 Functional Loss - HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27100995 chr6:27100998 nonsynonymous SNV 0.982 1 24 hm5C_associated_SNPs_54128 0 0 1 0 0 Ribosome 0.500231643922021 0.500231643921092 0.5212684 1.85762516480281e-12 hm5C_site_49480 DeepMRMD:0.5212684;iRNA_m5C:1.85762516480281e-12 49481 chr10 124352023 124352023 1 + A C rs544960589 124352019 + 124351999 124352039 41 TCTGGATGATGTGCGCTGCTCAGGACACGAGTCCTACCTGT TCTGGATGATGTGCGCTGCTCAGGCCACGAGTCCTACCTGT < 41bp 0.859010368970633 0.55580149981877 0.8391814 0.6837343 prediction 0.606417738303726 Functional Loss - DMBT1 ENSG00000187908 CDS Human protein_coding chr10:124352019 chr10:124352023 synonymous SNV . 0 25 hm5C_associated_SNPs_54129 0 0 1 0 0 exosome 0.500231502760256 0.500230399228955 0.3108942 2.20706260201098e-06 hm5C_site_49481 DeepMRMD:0.3108942;iRNA_m5C:2.20706260201098e-06 49482 chr11 66039329 66039329 1 + C A UCEC 66039331 - 66039311 66039351 41 TTCTTACTCACAGCAAACCGCAGGAGCAGGCATGACTTGCC TTCTTACTCACAGCAAACCGCATGAGCAGGCATGACTTGCC < 41bp 0.833311277887535 0.530111983153599 0.8598575 0.1083177 prediction 0.606398589467871 Functional Loss - RAB1B ENSG00000174903 CDS Human protein_coding chr11:66039331 chr11:66039329 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_54130 0 0 0 0 0 Ribosome 0.500231640369309 0.500231863304538 0.719715 0 hm5C_site_49482 DeepMRMD:0.719715;iRNA_m5C:0 49483 chr14 19553629 19553629 1 + G T HNSC 19553626 + 19553606 19553646 41 TGGTGCCGCCACTGCTTCCCCTGGTGCAGGGGGAGCAGCAA TGGTGCCGCCACTGCTTCCCCTGTTGCAGGGGGAGCAGCAA < 41bp 0.80319147262572 0.421898145123305 0.083054304 0.013752788 prediction 0.60638294525144 Functional Loss - POTEG ENSG00000222036 CDS Human protein_coding chr14:19553626 chr14:19553629 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_54131 0 0 0 0 0 exosome 0.500231643930152 0.500231643921084 0 1.81359371964618e-11 hm5C_site_49483 DeepMRMD:0;iRNA_m5C:1.81359371964618e-11 49484 chr14 19553628 19553628 1 + G T HNSC 19553626 + 19553606 19553646 41 TGGTGCCGCCACTGCTTCCCCTGGTGCAGGGGGAGCAGCAA TGGTGCCGCCACTGCTTCCCCTTGTGCAGGGGGAGCAGCAA < 41bp 0.80319147262572 0.475512513311566 0.083054304 0.018583506 prediction 0.60638294525144 Functional Loss - POTEG ENSG00000222036 CDS Human protein_coding chr14:19553626 chr14:19553628 nonsynonymous SNV 0.007 1 23 hm5C_associated_SNPs_54132 0 0 0 0 0 exosome 0.500231643930152 0.500231643921211 0 1.78808079454029e-11 hm5C_site_49484 DeepMRMD:0;iRNA_m5C:1.78808079454029e-11 49485 chr17 18874460 18874460 1 + G T UCEC 18874458 + 18874438 18874478 41 CATGTTTCGAGACCCCCACACAGGGGACCTGCCGTGGACCG CATGTTTCGAGACCCCCACACATGGGACCTGCCGTGGACCG < 41bp 0.853075347148341 0.549886315755539 0.92947507 0.10787901 prediction 0.606378062785605 Functional Loss - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18874458 chr17:18874460 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_54133 0 0 0 0 1 chromatin 0.500231643920994 0.500231586731366 0.85895014 1.14379256510588e-07 hm5C_site_49485 DeepMRMD:0.85895014;iRNA_m5C:1.14379256510588e-07 49486 chr11 66834286 66834286 1 + A T OV 66834282 + 66834262 66834302 41 CTGCTGCTTTGCTTCGATGTCACCAGCCCGAACAGCTTTGA CTGCTGCTTTGCTTCGATGTCACCTGCCCGAACAGCTTTGA < 41bp 0.803172383836137 0.476877908008604 0.107994735 0.072556645 prediction 0.606344767672274 Functional Loss - RHOD ENSG00000173156 CDS Human protein_coding chr11:66834282 chr11:66834286 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_54134 0 0 0 0 2 Cytosol 0.500231028866364 0.500231567719329 0 0 hm5C_site_49486 DeepMRMD:0;iRNA_m5C:0 49487 chr5 137681289 137681289 1 + G T LUAD 137681286 + 137681266 137681306 41 CGGCCTTCGTTGGACTTTGACAAGATGAATCAGGTGGGACC CGGCCTTCGTTGGACTTTGACAATATGAATCAGGTGGGACC < 41bp 0.803166503464974 0.433037056784715 0.86535025 0.39884245 prediction 0.606333006929948 Functional Loss - FAM53C ENSG00000120709 CDS Human protein_coding chr5:137681286 chr5:137681289 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54135 0 0 1 0 1 chromatin 0.500231643919416 0.500231643921093 0.7307005 0 hm5C_site_49487 DeepMRMD:0.7307005;iRNA_m5C:0 49488 chr4 185941572 185941572 1 + G T COAD 185941569 + 185941549 185941589 41 ATCCTCGCCTTCTTGCAGTCCAAGGCCCGCCTGGGCGCGGA ATCCTCGCCTTCTTGCAGTCCAATGCCCGCCTGGGCGCGGA < 41bp 0.80313812223033 0.421249435359743 0.3756221 0.13386631 prediction 0.606276244460661 Functional Loss - HELT ENSG00000187821 CDS Human protein_coding chr4:185941569 chr4:185941572 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_54136 0 0 0 0 0 exosome 0.500231633607787 0.500231643921092 0 0 hm5C_site_49488 DeepMRMD:0;iRNA_m5C:0 Blood protein levels 49489 chr16 2871417 2871417 1 + G T UCEC 2871415 + 2871395 2871435 41 ACAAGAATGGACTGTGGTATCAGATTGGAGTCGTGAGCTGG ACAAGAATGGACTGTGGTATCATATTGGAGTCGTGAGCTGG < 41bp 0.825287836976151 0.522154114243668 0.60150373 0.2253426 prediction 0.606267445464968 Functional Loss - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2871415 chr16:2871417 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_54137 0 0 1 0 0 chromatin 0.500205966349706 0.500231638339428 0.20300746 0 hm5C_site_49489 DeepMRMD:0.20300746;iRNA_m5C:0 49490 chr16 28914697 28914697 1 + G T UCEC 28914694 + 28914674 28914714 41 ACCCAGTGGCTCATGGTCCTCAAGATCTCACTGCCAGTCAT ACCCAGTGGCTCATGGTCCTCAATATCTCACTGCCAGTCAT < 41bp 0.883905028269276 0.580774283469359 0.21388209 0.043346882 prediction 0.606261489599833 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28914694 chr16:28914697 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_54138 0 0 1 0 1 chromatin 0.500231643921957 0.50023164391945 0 5.01376717920721e-12 hm5C_site_49490 DeepMRMD:0;iRNA_m5C:5.01376717920721e-12 49491 chr12 6437022 6437022 1 + G T LUSC 6437019 + 6436999 6437039 41 GATTGAGGGGGCCGAGGAGCCCCGGGACAGCAGGCCACGGA GATTGAGGGGGCCGAGGAGCCCCTGGACAGCAGGCCACGGA < 41bp 0.803127420636808 0.433337055156568 0.61738276 0.3104689 prediction 0.606254841273616 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6437019 chr12:6437022 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_54139 0 0 0 0 1 Nucleus 0.500231643921092 0.500231576023777 0.23476552 1.35794630651276e-07 hm5C_site_49491 DeepMRMD:0.23476552;iRNA_m5C:1.35794630651276e-07 49492 chr12 52309908 52309908 1 + G T UCEC 52309905 + 52309885 52309925 41 ACCAAGCGGTACATGGCACCCGAGGTGCTGGACGAGCAGAT ACCAAGCGGTACATGGCACCCGATGTGCTGGACGAGCAGAT < 41bp 0.803119200704491 0.424713865395449 0.86243856 0.23465446 prediction 0.606238401408982 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309905 chr12:52309908 nonsynonymous SNV 0.566 5 24 hm5C_associated_SNPs_54140 0 0 0 0 1 Endoplasmic reticulum 0.500231647168608 0.500231338268298 0.72487712 6.17800620439368e-07 hm5C_site_49492 DeepMRMD:0.72487712;iRNA_m5C:6.17800620439368e-07 49493 chr3 10157412 10157412 1 + G T SARC 10157410 + 10157390 10157430 41 CGGGACAGGAGGATCCGGTGCAGCGGGAGATTCACCAGGAC CGGGACAGGAGGATCCGGTGCATCGGGAGATTCACCAGGAC < 41bp 0.827990774239662 0.52487163255027 0.8671822 0.83867407 prediction 0.606238283378784 Functional Loss - BRK1 ENSG00000254999 CDS Human protein_coding chr3:10157410 chr3:10157412 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54141 0 0 1 0 1 Ribosome 0.500231643921093 0.500231643921093 0.0570162599999999 4.44089209850063e-16 hm5C_site_49493 DeepMRMD:0.0570162599999999;iRNA_m5C:4.44089209850063e-16 49494 chr1 26878170 26878170 1 + G T LUSC 26878167 + 26878147 26878187 41 AGGGCAAGCTCTATCTCATTCTGGACTTCCTGCGTGGTGGG AGGGCAAGCTCTATCTCATTCTGTACTTCCTGCGTGGTGGG < 41bp 0.887863640706765 0.584767163499947 0.37541166 0.17922023 prediction 0.606192954413635 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26878167 chr1:26878170 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54142 0 0 1 0 2 Ribosome 0.500231643774284 0.500231643921106 0 0 hm5C_site_49494 DeepMRMD:0;iRNA_m5C:0 49495 chr3 186501406 186501406 1 + G T LGG 186501404 + 186501384 186501424 41 AGTGGTTTTTCGGATCATGTCTGGTGGCTCCGCGGATTATA AGTGGTTTTTCGGATCATGTCTTGTGGCTCCGCGGATTATA < 41bp 0.815582718774525 0.512489606501422 0.8219842 0.41870388 prediction 0.606186224546207 Functional Loss - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186501404 chr3:186501406 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_54143 0 0 1 0 1 Nucleus 0.500226984919612 0.50023445137569 0.6439684 0 hm5C_site_49495 DeepMRMD:0.6439684;iRNA_m5C:0 49496 chr7 136700259 136700259 1 + G T SARC 136700257 + 136700237 136700277 41 ATATCCCGAGCCAGCAAGAGCAGGATAAAGAAGGACAAGAA ATATCCCGAGCCAGCAAGAGCATGATAAAGAAGGACAAGAA < 41bp 0.803084220161361 0.495071647367248 0.9102469 0.3425302 prediction 0.606168440322722 Functional Loss - CHRM2 ENSG00000181072 CDS Human protein_coding chr7:136700257 chr7:136700259 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_54144 0 0 0 0 0 exosome 0.500231643912864 0.500231638302999 0.8204938 1.12197293677951e-08 hm5C_site_49496 DeepMRMD:0.8204938;iRNA_m5C:1.12197293677951e-08 49497 chr11 68707088 68707088 1 + G T UCEC 68707085 + 68707065 68707105 41 CTCTATGCCGGCAGCGGGACCAAGAACGGATCCCTGGACCC CTCTATGCCGGCAGCGGGACCAATAACGGATCCCTGGACCC < 41bp 0.803077722467033 0.425620637185253 0.80752367 0.32402778 prediction 0.606155444934065 Functional Loss - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68707085 chr11:68707088 nonsynonymous SNV 0.944 4 24 hm5C_associated_SNPs_54145 0 0 0 0 1 chromatin 0.500231643921092 0.50023164393586 0.61504734 0 hm5C_site_49497 DeepMRMD:0.61504734;iRNA_m5C:0 49498 chr19 5077390 5077390 1 + G T LUSC 5077388 + 5077368 5077408 41 TCGGCCCTAGGCTTCTTCCCCGGGAGCTCGCAGGGCTGCGA TCGGCCCTAGGCTTCTTCCCCGTGAGCTCGCAGGGCTGCGA < 41bp 0.853542724247229 0.550466568970719 0.93570226 0.37934887 prediction 0.60615231055302 Functional Loss - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5077388 chr19:5077390 nonsynonymous SNV 0.821 4 23 hm5C_associated_SNPs_54146 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921094 0.87140452 0 hm5C_site_49498 DeepMRMD:0.87140452;iRNA_m5C:0 49499 chr1 32796465 32796465 1 + G T LUAD 32796463 + 32796443 32796483 41 ATTCGTAACGTTGCCCGGTGCTGGACATATGAGACAGCTGT ATTCGTAACGTTGCCCGGTGCTTGACATATGAGACAGCTGT < 41bp 0.826315454504951 0.523259803040607 0.21692598 0.1450364 prediction 0.606111302928687 Functional Loss - HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32796463 chr1:32796465 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_54147 0 0 1 0 2 Cytosol 0.500231518012907 0.500231635902636 0 0 hm5C_site_49499 DeepMRMD:0;iRNA_m5C:0 49500 chr2 24244608 24244608 1 + G T STAD 24244606 + 24244586 24244626 41 CCTAGGGGTGAAGGAGCGGCCAGGTATGGGGTTTGGTGAGG CCTAGGGGTGAAGGAGCGGCCATGTATGGGGTTTGGTGAGG < 41bp 0.803037495154987 0.477082888689724 0.41288906 0.09151518 prediction 0.606074990309974 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24244606 chr2:24244608 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_54148 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 1.77635683940025e-15 hm5C_site_49500 DeepMRMD:0;iRNA_m5C:1.77635683940025e-15 49501 chr21 47419132 47419132 1 + G T STAD 47419130 + 47419110 47419150 41 ACCGGGGTCCCGAGGGCCCCCAGGTGGGTGGATGTGGCTGG ACCGGGGTCCCGAGGGCCCCCATGTGGGTGGATGTGGCTGG < 41bp 0.803036311810571 0.472917893045645 0.90092134 0.44892156 prediction 0.606072623621142 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47419130 chr21:47419132 nonsynonymous SNV 0.825 1 23 hm5C_associated_SNPs_54149 0 0 0 0 2 exosome 0.500231645173769 0.500231643787538 0.80184268 2.77246092750261e-09 hm5C_site_49501 DeepMRMD:0.80184268;iRNA_m5C:2.77246092750261e-09 49502 chr7 150738265 150738265 1 + G T LUAD 150738263 + 150738243 150738283 41 TGATGCTGGATGGGCGGGACCTGCGCACCCTTGACCCCTCC TGATGCTGGATGGGCGGGACCTTCGCACCCTTGACCCCTCC < 41bp 0.803023782116343 0.4764887935478 0.07626465 0.067911 prediction 0.606047564232685 Functional Loss - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150738263 chr7:150738265 synonymous SNV . 0 23 hm5C_associated_SNPs_54150 0 0 1 0 2 Ribosome 0.50018874055128 0.50022946790268 0 0 hm5C_site_49502 DeepMRMD:0;iRNA_m5C:0 49503 chrX 107301374 107301374 1 + A T LUSC 107301370 + 107301350 107301390 41 CTACACCACCACTGTGGCCTCCCGAGAACAGCTTTCCATCC CTACACCACCACTGTGGCCTCCCGTGAACAGCTTTCCATCC < 41bp 0.80302104783255 0.487510605222156 0.34068567 0.15522176 prediction 0.6060420956651 Functional Loss - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107301370 chrX:107301374 synonymous SNV . 0 25 hm5C_associated_SNPs_54151 0 0 0 0 1 Nucleus 0.50023163567601 0.500230434182537 0 2.40298694764718e-06 hm5C_site_49503 DeepMRMD:0;iRNA_m5C:2.40298694764718e-06 49504 chrX 48652627 48652627 1 + G T UCEC 48652624 + 48652604 48652644 41 GTGTCCTTCTCCTCTTGTAGCCAGAATTCTGGACAACCCAA GTGTCCTTCTCCTCTTGTAGCCATAATTCTGGACAACCCAA < 41bp 0.803018534227461 0.446670705179518 0.6436623 0.29312623 prediction 0.606037068454922 Functional Loss - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48652624 chrX:48652627 nonsynonymous SNV 0.023 1 24 hm5C_associated_SNPs_54152 0 0 1 0 0 Cytosol 0.500253213072439 0.500231679020962 0.2873246 4.30681029548463e-05 hm5C_site_49504 DeepMRMD:0.2873246;iRNA_m5C:4.30681029548463e-05 49505 chr17 41166275 41166275 1 + G T STAD 41166272 + 41166252 41166292 41 AGGCCCTGACAGTCGTACCCCAAGGACAGCAGGGCCTAGCA AGGCCCTGACAGTCGTACCCCAATGACAGCAGGGCCTAGCA < 41bp 0.88590706496602 0.582888802708687 0.40574273 0.29120165 prediction 0.606036524514666 Functional Loss - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41166272 chr17:41166275 stopgain 0.543 1 24 hm5C_associated_SNPs_54153 0 0 1 0 0 Cytosol 0.500231613763068 0.500231644287856 0 0 hm5C_site_49505 DeepMRMD:0;iRNA_m5C:0 49506 chr1 167095184 167095184 1 + G T LUSC 167095182 + 167095162 167095202 41 AGGGCTTCCTGAAGCAGCTGCGGGAGCTCAATGAGAAGTTG AGGGCTTCCTGAAGCAGCTGCGTGAGCTCAATGAGAAGTTG < 41bp 0.803008724762291 0.471999396920833 0.79986227 0.28872275 prediction 0.606017449524582 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167095182 chr1:167095184 synonymous SNV . 0 23 hm5C_associated_SNPs_54154 0 0 0 0 0 Endoplasmic reticulum 0.500231388443798 0.500227337071739 0.59972454 8.10274411877643e-06 hm5C_site_49506 DeepMRMD:0.59972454;iRNA_m5C:8.10274411877643e-06 49507 chr3 50091823 50091823 1 + G T UCEC 50091820 + 50091800 50091840 41 CTGTTCATTCTGCAAGAACCCAAGAGAAGGTGAGTGGCGAA CTGTTCATTCTGCAAGAACCCAATAGAAGGTGAGTGGCGAA < 41bp 0.803003106013471 0.447180861680207 0.8027283 0.11741826 prediction 0.606006212026942 Functional Loss - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50091820 chr3:50091823 stopgain 0.950 1 24 hm5C_associated_SNPs_54155 0 0 1 0 1 Nucleus 0.500231657673399 0.500231648620585 0.6054566 1.81056265535773e-08 hm5C_site_49507 DeepMRMD:0.6054566;iRNA_m5C:1.81056265535773e-08 49508 chr8 48353079 48353079 1 + G T COAD 48353076 + 48353056 48353096 41 GCTACCTCAGGGGCCGTCCCCAGGACACTGTCCGGATCTTC GCTACCTCAGGGGCCGTCCCCAGTACACTGTCCGGATCTTC < 41bp 0.823985619501909 0.520983752916393 0.90158975 0.32928905 prediction 0.606003733171032 Functional Loss - SPIDR ENSG00000164808 CDS Human protein_coding chr8:48353076 chr8:48353079 nonsynonymous SNV 0.033 4 24 hm5C_associated_SNPs_54156 0 0 1 0 1 Ribosome 0.50023164392168 0.500231643921092 0.8031795 1.17550413847312e-12 hm5C_site_49508 DeepMRMD:0.8031795;iRNA_m5C:1.17550413847312e-12 49509 chr10 76980698 76980698 1 + G T LGG 76980696 + 76980676 76980716 41 AATAACTTTGCAGTGGGCTACAGGACTGGGGACTTCCAGCT AATAACTTTGCAGTGGGCTACATGACTGGGGACTTCCAGCT < 41bp 0.803000559238351 0.490888140575011 0.25493976 0.12665918 prediction 0.606001118476703 Functional Loss - VDAC2 ENSG00000165637 CDS Human protein_coding chr10:76980696 chr10:76980698 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_54157 0 0 1 0 1 Ribosome 0.500231643921231 0.500231643918592 0 5.27888843748769e-12 hm5C_site_49509 DeepMRMD:0;iRNA_m5C:5.27888843748769e-12 49510 chrX 31525469 31525469 1 + G T LIHC 31525466 + 31525446 31525486 41 TTATCCAAACGTCTTTGTAACAGGACTGCATCATCGGAACC TTATCCAAACGTCTTTGTAACAGTACTGCATCATCGGAACC < 41bp 0.802998466443525 0.460793737909769 0.60359097 0.18276358 prediction 0.60599693288705 Functional Loss - DMD ENSG00000198947 CDS Human protein_coding chrX:31525466 chrX:31525469 synonymous SNV . 0 24 hm5C_associated_SNPs_54158 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.20718194 0 hm5C_site_49510 DeepMRMD:0.20718194;iRNA_m5C:0 49511 chr1 42922986 42922986 1 + G T GBM 42922984 + 42922964 42923004 41 TGTTCCTGTCTCTGAAATGCCTGAACACAAGATCCAGTCAT TGTTCCTGTCTCTGAAATGCCTTAACACAAGATCCAGTCAT < 41bp 0.817147603888139 0.514155868025 0.28997785 0.2322191 prediction 0.605983471726278 Functional Loss - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922984 chr1:42922986 stopgain 1.000 1 23 hm5C_associated_SNPs_54159 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921091 0 2.22044604925031e-15 hm5C_site_49511 DeepMRMD:0;iRNA_m5C:2.22044604925031e-15 49512 chr14 96157205 96157205 1 + G T SARC 96157203 + 96157183 96157223 41 CCCCGGGAGGAAGTACCGAGCAGCGGATTCCAGTTTCTGGG CCCCGGGAGGAAGTACCGAGCATCGGATTCCAGTTTCTGGG < 41bp 0.802988264735721 0.464437786614427 0.7340421 0.2672006 prediction 0.605976529471442 Functional Loss - TCL1B ENSG00000213231 CDS Human protein_coding chr14:96157203 chr14:96157205 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_54160 0 0 0 0 0 exosome 0.500231643921113 0.500231643923197 0.4680842 0 hm5C_site_49512 DeepMRMD:0.4680842;iRNA_m5C:0 49513 chr12 78444689 78444689 1 + G T LUAD 78444686 + 78444666 78444706 41 AGGCGGGAGATGCTCCCTCCCTGGGTGCTGGCTATCCTCGC AGGCGGGAGATGCTCCCTCCCTGTGTGCTGGCTATCCTCGC < 41bp 0.802982272408186 0.452410885069021 0.35012057 0.066485316 prediction 0.605964544816372 Functional Loss - NAV3 ENSG00000067798 CDS Human protein_coding chr12:78444686 chr12:78444689 nonsynonymous SNV 0.882 3 24 hm5C_associated_SNPs_54161 0 0 0 0 0 Nucleus 0.500231643971208 0.500231643955386 0 3.16431325586564e-11 hm5C_site_49513 DeepMRMD:0;iRNA_m5C:3.16431325586564e-11 49514 chr3 127387303 127387303 1 + G T ACC 127387301 + 127387281 127387321 41 TAGGAGGTGTTCCGGCAGCACCGGGGGCCACAGCTCCTGGC TAGGAGGTGTTCCGGCAGCACCTGGGGCCACAGCTCCTGGC < 41bp 0.802980578878249 0.470182927464486 0.94960225 0.90047693 prediction 0.605961157756498 Functional Loss - PODXL2 ENSG00000114631 CDS Human protein_coding chr3:127387301 chr3:127387303 nonsynonymous SNV 0.992 2 23 hm5C_associated_SNPs_54162 0 0 1 0 1 chromatin 0.4994701819759 0.500231643890037 0.0982506400000001 0 hm5C_site_49514 DeepMRMD:0.0982506400000001;iRNA_m5C:0 49515 chr12 111758147 111758147 1 + G T HNSC 111758144 + 111758124 111758164 41 ATCATCCGCAAGGTCAAGTCCGAGATCGGCGACGCCGGCTA ATCATCCGCAAGGTCAAGTCCGATATCGGCGACGCCGGCTA < 41bp 0.874491834180879 0.571521161208092 0.7118008 0.19858071 prediction 0.605941345945574 Functional Loss - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111758144 chr12:111758147 nonsynonymous SNV 0.976 4 24 hm5C_associated_SNPs_54163 0 0 0 0 0 exosome 0.500231643926099 0.500231643898023 0.4236016 5.61530821840961e-11 hm5C_site_49515 DeepMRMD:0.4236016;iRNA_m5C:5.61530821840961e-11 49516 chr19 35610288 35610288 1 + A C rs62120434 35610284 + 35610264 35610304 41 TAGGCCAGCGCTCTGACATGCAGAAGGTGACCCTGGGCCTG TAGGCCAGCGCTCTGACATGCAGACGGTGACCCTGGGCCTG < 41bp 0.886846027440153 0.583881697051461 0.90056896 0.81149304 prediction 0.605928660777385 Functional Loss - FXYD3 ENSG00000089356 CDS Human protein_coding chr19:35610284 chr19:35610288 nonsynonymous SNV 0.717 0 25 hm5C_associated_SNPs_54164 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643921092 0.17815184 0 hm5C_site_49516 DeepMRMD:0.17815184;iRNA_m5C:0 49517 chr11 57947730 57947730 1 + G T LGG 57947727 + 57947707 57947747 41 ATCAGTCTTCGGAGAAGAATCGGGTAGTGTCTGTGCTTTAC ATCAGTCTTCGGAGAAGAATCGGTTAGTGTCTGTGCTTTAC < 41bp 0.802956632092137 0.429155726454681 0.8668208 0.22872403 prediction 0.605913264184274 Functional Loss - OR9Q1 ENSG00000186509 CDS Human protein_coding chr11:57947727 chr11:57947730 nonsynonymous SNV 0.161 2 24 hm5C_associated_SNPs_54165 0 0 0 0 0 nucleus 0.500231643921088 0.500231643921092 0.7336416 0 hm5C_site_49517 DeepMRMD:0.7336416;iRNA_m5C:0 49518 chr20 18448072 18448072 1 + A C rs730203 18448068 + 18448048 18448088 41 GGCCTCAGCAGAGCGCTATCCTCCACTGGTTCCCCGGGTTC GGCCTCAGCAGAGCGCTATCCTCCCCTGGTTCCCCGGGTTC < 41bp 0.875735262537407 0.572783985911309 0.9599974 0.8287451 prediction 0.605902553252196 Functional Loss - POLR3F ENSG00000132664 UTR5 Human protein_coding chr20:18448068 chr20:18448072 . . 0 25 hm5C_associated_SNPs_54166 0 0 1 0 0 Ribosome 0.500231645709767 0.500231640321142 0.2625046 1.077725042542e-08 hm5C_site_49518 DeepMRMD:0.2625046;iRNA_m5C:1.077725042542e-08 49519 chr2 155555326 155555326 1 + G T LUAD 155555324 + 155555304 155555344 41 GGAAATTTGGGGACGATTATCAGGTAGTGACCACATCGTCC GGAAATTTGGGGACGATTATCATGTAGTGACCACATCGTCC < 41bp 0.844349923301416 0.541399296153652 0.9189764 0.54779506 prediction 0.60590125429553 Functional Loss - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155555324 chr2:155555326 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54167 0 0 0 0 0 exosome 0.500231289619621 0.500231643814465 0.74236268 0 hm5C_site_49519 DeepMRMD:0.74236268;iRNA_m5C:0 49520 chr16 27455897 27455897 1 + G T UCEC 27455894 + 27455874 27455914 41 AAAGCTGATCTCAGTGGACTCAAGAAGTGTCTCCCTCCTCC AAAGCTGATCTCAGTGGACTCAATAAGTGTCTCCCTCCTCC < 41bp 0.802947693077862 0.415117276543848 0.89128214 0.22787797 prediction 0.605895386155724 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27455894 chr16:27455897 nonsynonymous SNV 0.754 1 24 hm5C_associated_SNPs_54168 0 0 0 0 0 nucleus 0.500229070365368 0.500231643828821 0.78256428 0 hm5C_site_49520 DeepMRMD:0.78256428;iRNA_m5C:0 49521 chr19 9361818 9361818 1 + G T LUAD 9361816 + 9361796 9361836 41 GTGTCTCAGAATTCCTCCTCCTGGGACTCTCAGAGGATCCA GTGTCTCAGAATTCCTCCTCCTTGGACTCTCAGAGGATCCA < 41bp 0.824033853067401 0.521087373129802 0.14824829 0.09355709 prediction 0.605892959875197 Functional Loss - OR7E24 ENSG00000237521 CDS Human protein_coding chr19:9361816 chr19:9361818 synonymous SNV . 0 23 hm5C_associated_SNPs_54169 0 0 0 0 0 unknown 0.500231655645696 0.50023164438858 0 2.25142331444772e-08 hm5C_site_49521 DeepMRMD:0;iRNA_m5C:2.25142331444772e-08 49522 chr12 58013742 58013742 1 + G T rs144483451 58013740 + 58013720 58013760 41 AGGCTTAGGGAGCTGGGAATCCGGGAGCAGATGGTGGGTTC AGGCTTAGGGAGCTGGGAATCCTGGAGCAGATGGTGGGTTC < 41bp 0.833176228196675 0.530252646759904 0.89876753 0.47215235 prediction 0.605847162873542 Functional Loss - LOC101927583 ENSG00000135502 UTR5 Human protein_coding chr12:58013740 chr12:58013742 . . 0 23 hm5C_associated_SNPs_54170 0 0 0 0 0 unknown 0.500231643921078 0.500231643921137 0.79753506 0 hm5C_site_49522 DeepMRMD:0.79753506;iRNA_m5C:0 49523 chr20 30414599 30414599 1 + G T UCEC 30414597 + 30414577 30414617 41 CGTGGAGGGGTCTGTGCACACAGCATCGAGGGCGGAGAGCT CGTGGAGGGGTCTGTGCACACATCATCGAGGGCGGAGAGCT < 41bp 0.802914558166078 0.48334306729537 0.2820539 0.07461414 prediction 0.605829116332157 Functional Loss - MYLK2 ENSG00000101306 splicing Human protein_coding chr20:30414597 chr20:30414599 . 1.000 0 23 hm5C_associated_SNPs_54171 0 0 0 0 0 exosome 0.500231643921092 0.500231643921274 0 0 hm5C_site_49523 DeepMRMD:0;iRNA_m5C:0 49524 chr4 79793867 79793867 1 + G T COAD 79793864 + 79793844 79793884 41 CTGAATATCTTACCTCCCCTCAAGAGTTCTCACCAGCCTTA CTGAATATCTTACCTCCCCTCAATAGTTCTCACCAGCCTTA < 41bp 0.802913838509058 0.428827108317744 0.8737062 0.23734841 prediction 0.605827677018116 Functional Loss - BMP2K ENSG00000138756 CDS Human protein_coding chr4:79793864 chr4:79793867 stopgain 1.000 0 24 hm5C_associated_SNPs_54172 0 0 1 0 1 Cytosol 0.500231643928674 0.500231643921092 0.7474124 1.51634260703304e-11 hm5C_site_49524 DeepMRMD:0.7474124;iRNA_m5C:1.51634260703304e-11 49525 chr1 203452423 203452423 1 + G T LUSC 203452420 + 203452400 203452440 41 ACTGGGCCCGGGCGCAGACCCAGGCCCAGGCCCAGGCCCAC ACTGGGCCCGGGCGCAGACCCAGTCCCAGGCCCAGGCCCAC < 41bp 0.892279231181296 0.589379506804705 0.8342551 0.2726651 prediction 0.605799448753181 Functional Loss - PRELP ENSG00000188783 CDS Human protein_coding chr1:203452420 chr1:203452423 nonsynonymous SNV 0.315 0 24 hm5C_associated_SNPs_54173 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.6685102 0 hm5C_site_49525 DeepMRMD:0.6685102;iRNA_m5C:0 49526 chr6 150290487 150290487 1 + G T LUAD 150290484 + 150290464 150290504 41 TGATGTACTGGGAACAAATGCTGGATCCAACAAGTAAGTGA TGATGTACTGGGAACAAATGCTGTATCCAACAAGTAAGTGA < 41bp 0.864041221547797 0.561152580398735 0.7275993 0.4130225 prediction 0.605777282298123 Functional Loss - ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290484 chr6:150290487 nonsynonymous SNV 0.009 2 24 hm5C_associated_SNPs_54174 0 0 0 0 1 Nucleus 0.500237570261557 0.500231643027652 0.4551986 1.18544678102683e-05 hm5C_site_49526 DeepMRMD:0.4551986;iRNA_m5C:1.18544678102683e-05 49527 chr20 49575390 49575390 1 + G T LUSC 49575388 + 49575368 49575408 41 GAAGAGGTCGCCATGGCTTCCCGGGAGGAGGTACTCGCCTT GAAGAGGTCGCCATGGCTTCCCTGGAGGAGGTACTCGCCTT < 41bp 0.821075142579346 0.518200901142026 0.82519925 0.13990593 prediction 0.605748482874639 Functional Loss - MOCS3 ENSG00000124217 CDS Human protein_coding chr20:49575388 chr20:49575390 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_54175 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0.6503985 0 hm5C_site_49527 DeepMRMD:0.6503985;iRNA_m5C:0 49528 chr2 234102462 234102462 1 + G T COAD 234102459 + 234102439 234102479 41 TCTCCCACTTTCCCTGCAGGCGAGGGCTGCATTGCCCTTCG TCTCCCACTTTCCCTGCAGGCGATGGCTGCATTGCCCTTCG < 41bp 0.802861201176661 0.421141958663442 0.9325694 0.35752612 prediction 0.605722402353322 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234102459 chr2:234102462 nonsynonymous SNV 0.683 4 24 hm5C_associated_SNPs_54176 0 0 1 0 1 Cytosol 0.500231643860686 0.500231617101944 0.8651388 5.35174839999542e-08 hm5C_site_49528 DeepMRMD:0.8651388;iRNA_m5C:5.35174839999542e-08 49529 chr5 1037955 1037955 1 + G T LUAD 1037952 + 1037932 1037972 41 TGCAAGCAAAGCAGGAGCCCCAGGGCAGGGCCTCGCACCTC TGCAAGCAAAGCAGGAGCCCCAGTGCAGGGCCTCGCACCTC < 41bp 0.878116976384141 0.575260832483623 0.93921447 0.80486476 prediction 0.605712287801037 Functional Loss - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1037952 chr5:1037955 nonsynonymous SNV 0.018 3 24 hm5C_associated_SNPs_54177 0 0 0 0 0 exosome 0.500231643919515 0.50023158060431 0.26869942 1.26630410823836e-07 hm5C_site_49529 DeepMRMD:0.26869942;iRNA_m5C:1.26630410823836e-07 49530 chr12 7047656 7047656 1 + G T BLCA 7047653 + 7047633 7047673 41 GTATCCCACAGAAGTTGGCTCAGGAGGGCCGTGCTCCGGTG GTATCCCACAGAAGTTGGCTCAGTAGGGCCGTGCTCCGGTG < 41bp 0.892129021680496 0.589275444127678 0.91245574 0.2801594 prediction 0.605707155105635 Functional Loss - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7047653 chr12:7047656 stopgain 0.962 0 24 hm5C_associated_SNPs_54178 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.82491148 0 hm5C_site_49530 DeepMRMD:0.82491148;iRNA_m5C:0 49531 chr17 38600328 38600328 1 + A C COAD 38600324 + 38600304 38600344 41 TCGAGGCCATCCAGGAAAGCCTGCAGCCCTCTGGTAAGGTA TCGAGGCCATCCAGGAAAGCCTGCCGCCCTCTGGTAAGGTA < 41bp 0.802851041624425 0.415536633698952 0.26414454 0.17497444 prediction 0.605702083248851 Functional Loss - IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38600324 chr17:38600328 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_54179 0 0 1 0 1 Nucleus 0.500231540430666 0.500231643921092 0 0 hm5C_site_49531 DeepMRMD:0;iRNA_m5C:0 49532 chr5 176798907 176798907 1 + G T SARC 176798905 + 176798885 176798925 41 CTGCTGAACCGGGTGCAGAGCAGCGGGGCCCACGACCAGAG CTGCTGAACCGGGTGCAGAGCATCGGGGCCCACGACCAGAG < 41bp 0.802844878558083 0.482141615194997 0.8995432 0.72295576 prediction 0.605689757116166 Functional Loss - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176798905 chr5:176798907 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_54180 0 0 1 0 1 nucleolus 0.500231643921092 0.50023164392091 0.35317488 3.64597241286901e-13 hm5C_site_49532 DeepMRMD:0.35317488;iRNA_m5C:3.64597241286901e-13 49533 chr2 235961378 235961378 1 + G T THYM 235961376 + 235961356 235961396 41 TCTCCCCACCGGGACAGGAACGGGGTTGTGGACAGCGAGGT TCTCCCCACCGGGACAGGAACGTGGTTGTGGACAGCGAGGT < 41bp 0.846858490567428 0.544015521253852 0.9255338 0.4543972 prediction 0.605685938627152 Functional Loss - SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235961376 chr2:235961378 nonsynonymous SNV 0.963 4 23 hm5C_associated_SNPs_54181 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921092 0.8510676 0 hm5C_site_49533 DeepMRMD:0.8510676;iRNA_m5C:0 49534 chr5 72251947 72251947 1 + G T COAD 72251944 + 72251924 72251964 41 ATGGTCATGGCGTATTTCGTCGAGAATTTTTGGGTAAGCTT ATGGTCATGGCGTATTTCGTCGATAATTTTTGGGTAAGCTT < 41bp 0.802842827280428 0.465976014628134 0.7251356 0.18304694 prediction 0.605685654560857 Functional Loss - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72251944 chr5:72251947 nonsynonymous SNV 0.861 0 24 hm5C_associated_SNPs_54182 0 0 1 0 1 chromatin 0.500231643919706 0.50023164389397 0.4502712 5.14714937338567e-11 hm5C_site_49534 DeepMRMD:0.4502712;iRNA_m5C:5.14714937338567e-11 49535 chr12 9072417 9072417 1 + G T UCEC 9072415 + 9072395 9072435 41 TCCACCAGTTCATGCTCCAGCAGCAGCTCAGTAATGCCCAG TCCACCAGTTCATGCTCCAGCATCAGCTCAGTAATGCCCAG < 41bp 0.802833466957357 0.47293348815146 0.42293453 0.111079216 prediction 0.605666933914713 Functional Loss - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9072415 chr12:9072417 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54183 0 0 0 0 2 Endoplasmic reticulum 0.500231643921088 0.500231643920894 0 3.8835601401388e-13 hm5C_site_49535 DeepMRMD:0;iRNA_m5C:3.8835601401388e-13 49536 chr16 10841060 10841060 1 + G T LUAD 10841057 + 10841037 10841077 41 ACACAAAATCTTGGTATTGTCTGGGAAAGGCGGTGTTGGGA ACACAAAATCTTGGTATTGTCTGTGAAAGGCGGTGTTGGGA < 41bp 0.87716682297322 0.5743510851763 0.33884498 0.05151871 prediction 0.60563147559384 Functional Loss - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10841057 chr16:10841060 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54184 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643924499 0 0 hm5C_site_49536 DeepMRMD:0;iRNA_m5C:0 49537 chr2 71368480 71368480 1 + A C UCEC 71368476 + 71368456 71368496 41 GCCTTGCTGAAATTTATGAACAGGAGTACATCAAACTCAAC GCCTTGCTGAAATTTATGAACAGGCGTACATCAAACTCAAC < 41bp 0.884975866295793 0.582167811373376 0.8917302 0.88601375 prediction 0.605616109844835 Functional Loss - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71368476 chr2:71368480 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_54185 0 0 1 0 1 Cytosol 0.500231691218984 0.500231692207 0.0114329 0 hm5C_site_49537 DeepMRMD:0.0114329;iRNA_m5C:0 49538 chr20 45353979 45353979 1 + G T LUAD 45353976 + 45353956 45353996 41 TGGCTGGTTCCCTGGCCTGGCTGGTCCTGGGCCGCGCTGTG TGGCTGGTTCCCTGGCCTGGCTGTTCCTGGGCCGCGCTGTG < 41bp 0.802797645889065 0.412594391241414 0.34408534 0.2491659 prediction 0.605595291778131 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45353976 chr20:45353979 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_54186 0 0 1 0 0 Nucleus 0.50023164591322 0.500231643921672 0 3.98309585314394e-09 hm5C_site_49538 DeepMRMD:0;iRNA_m5C:3.98309585314394e-09 49539 chr12 124220152 124220152 1 + G T LUSC 124220150 + 124220130 124220170 41 ATCCAGGAGGGGCTGAACACCCGCATCCAGGATCTCTACAC ATCCAGGAGGGGCTGAACACCCTCATCCAGGATCTCTACAC < 41bp 0.833182538029036 0.530389635098119 0.25508878 0.13309655 prediction 0.605585805861835 Functional Loss - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124220150 chr12:124220152 nonsynonymous SNV 0.085 5 23 hm5C_associated_SNPs_54187 0 0 1 0 2 Endoplasmic reticulum 0.500231606024117 0.500231611787185 0 0 hm5C_site_49539 DeepMRMD:0;iRNA_m5C:0 49540 chr18 77659249 77659249 1 + G T STAD 77659246 + 77659226 77659266 41 GCGGCAGGCCCGGGCGGGACCAAGCTCCTGGAGCGCGCGGG GCGGCAGGCCCGGGCGGGACCAATCTCCTGGAGCGCGCGGG < 41bp 0.802778957154967 0.436711373472183 0.9077855 0.8709249 prediction 0.605557914309935 Functional Loss - KCNG2 ENSG00000178342 CDS Human protein_coding chr18:77659246 chr18:77659249 nonsynonymous SNV 0.127 1 24 hm5C_associated_SNPs_54188 0 0 0 0 0 exosome 0.500231643921092 0.500231643921052 0.0737212 8.08242361927114e-14 hm5C_site_49540 DeepMRMD:0.0737212;iRNA_m5C:8.08242361927114e-14 49541 chrX 38534989 38534989 1 + A T BLCA 38534985 + 38534965 38535005 41 TGCTGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCC TGCTGTGGTGTGCAGAACTACACCTACTGGAGCACCAGCCC < 41bp 0.802778633251309 0.472761184232911 0.14540869 0.104442924 prediction 0.605557266502619 Functional Loss - TSPAN7 ENSG00000156298;ENSG00000250349 CDS Human other chrX:38534985 chrX:38534989 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_54189 0 0 1 0 1 Ribosome 0.500229688834916 0.500231304342907 0 0 hm5C_site_49541 DeepMRMD:0;iRNA_m5C:0 49542 chr15 29385314 29385314 1 + G T LUSC 29385312 + 29385292 29385332 41 GAACCAGAAGACCTCATCGACGGGATCATCTTTGCTGCCAA GAACCAGAAGACCTCATCGACGTGATCATCTTTGCTGCCAA < 41bp 0.802771008877745 0.485825244034651 0.87967193 0.34330857 prediction 0.605542017755491 Functional Loss - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29385312 chr15:29385314 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_54190 0 0 1 0 1 Cytosol 0.500231643954911 0.500439781077565 0.75934386 0 hm5C_site_49542 DeepMRMD:0.75934386;iRNA_m5C:0 49543 chr14 23511785 23511785 1 + G T BRCA 23511783 + 23511763 23511803 41 GGGAGCTGCGGCTTCGGGAACTGAGGGAGGGTCAGCTGCCC GGGAGCTGCGGCTTCGGGAACTTAGGGAGGGTCAGCTGCCC < 41bp 0.841282315083218 0.538518408977575 0.9058628 0.88914376 prediction 0.605527812211286 Functional Loss - PSMB11 ENSG00000222028 CDS Human protein_coding chr14:23511783 chr14:23511785 synonymous SNV . 0 23 hm5C_associated_SNPs_54191 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.03343808 0 hm5C_site_49543 DeepMRMD:0.03343808;iRNA_m5C:0 49544 chr20 42087030 42087030 1 + G T HNSC 42087027 + 42087007 42087047 41 CTTCGTGGAGTTCGAGGACTCCCGCGACGCCGACGACGCCG CTTCGTGGAGTTCGAGGACTCCCTCGACGCCGACGACGCCG < 41bp 0.802753569477038 0.45846695603503 0.17487067 0.10631275 prediction 0.605507138954077 Functional Loss - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42087027 chr20:42087030 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_54192 0 0 1 0 1 Nucleus 0.500231643918863 0.500231643921403 0 0 hm5C_site_49544 DeepMRMD:0;iRNA_m5C:0 49545 chr1 161681143 161681143 1 + G T LUSC 161681140 + 161681120 161681160 41 CTGGGTCCCCCCGGGCCTAACAGGGAATTCTCCATCACCGT CTGGGTCCCCCCGGGCCTAACAGTGAATTCTCCATCACCGT < 41bp 0.83730179327323 0.534553556845258 0.9420907 0.11973989 prediction 0.605496472855946 Functional Loss - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161681140 chr1:161681143 nonsynonymous SNV 0.448 0 24 hm5C_associated_SNPs_54193 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643930703 0.8841814 0 hm5C_site_49545 DeepMRMD:0.8841814;iRNA_m5C:0 49546 chr19 41245400 41245400 1 + G T CESC 41245397 + 41245377 41245417 41 TGCCCTGGGCTGAGGGCAACCGTGAGGACGGCTACCTCTGG TGCCCTGGGCTGAGGGCAACCGTTAGGACGGCTACCTCTGG < 41bp 0.868145386393971 0.565413891652274 0.679736 0.26130673 prediction 0.605462989483395 Functional Loss - ITPKC ENSG00000086544 CDS Human protein_coding chr19:41245397 chr19:41245400 stopgain 0.998 1 24 hm5C_associated_SNPs_54194 0 0 0 0 0 Cytosol 0.500231055226277 0.500231643921092 0.359472 0 hm5C_site_49546 DeepMRMD:0.359472;iRNA_m5C:0 49547 chr18 10485748 10485748 1 + G T UCEC 10485746 + 10485726 10485766 41 AGCCGCGGCGTCCTCTCGTCCAGGGTCATGGGAGGCACCGA AGCCGCGGCGTCCTCTCGTCCATGGTCATGGGAGGCACCGA < 41bp 0.8577932825384 0.555076789379378 0.84410906 0.086224556 prediction 0.605432986318043 Functional Loss - APCDD1 ENSG00000154856;ENSG00000154856 exonic;splicing Human other chr18:10485746 chr18:10485748 nonsynonymous SNV 0.129 2 23 hm5C_associated_SNPs_54195 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643880284 0.68821812 8.1616269298479e-11 hm5C_site_49547 DeepMRMD:0.68821812;iRNA_m5C:8.1616269298479e-11 49548 chr5 156638359 156638359 1 + G T LUAD 156638357 + 156638337 156638377 41 GATCGTGAGAGCCGGCAGCGCTGGGTGCTGGCCCTTAAAGA GATCGTGAGAGCCGGCAGCGCTTGGTGCTGGCCCTTAAAGA < 41bp 0.837244922822631 0.534529642957052 0.4974079 0.3700809 prediction 0.605430559731158 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156638357 chr5:156638359 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_54196 0 0 0 0 2 exosome 0.500231643579876 0.500231658293768 0 0 hm5C_site_49548 DeepMRMD:0;iRNA_m5C:0 49549 chr19 40095959 40095959 1 + A C UCEC 40095955 + 40095935 40095975 41 GATATGGATGTTGGAGGAGACAACAGACTACGTGCCCTTTG GATATGGATGTTGGAGGAGACAACCGACTACGTGCCCTTTG < 41bp 0.889733727574108 0.587020368768806 0.3452841 0.20215183 prediction 0.605426717610606 Functional Loss - LGALS13 ENSG00000105198 CDS Human protein_coding chr19:40095955 chr19:40095959 synonymous SNV . 0 25 hm5C_associated_SNPs_54197 0 0 0 0 1 unknown 0.500231643921093 0.500231643921092 0 1.11022302462516e-15 hm5C_site_49549 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 49550 chr17 3629698 3629698 1 + A C rs170208 3629694 + 3629674 3629714 41 GCCTCTGGTGCTGTTTCAACCTCCATCCCCACAGGAGGGTG GCCTCTGGTGCTGTTTCAACCTCCCTCCCCACAGGAGGGTG < 41bp 0.802712528409996 0.41976738413584 0.93224335 0.10470548 prediction 0.605425056819993 Functional Loss - HASPIN ENSG00000177602 UTR3 Human protein_coding chr17:3629694 chr17:3629698 . . 0 25 hm5C_associated_SNPs_54198 0 0 1 1 0 unknown 0.500231643981366 0.500231643928032 0.8644867 1.06668451849146e-10 hm5C_site_49550 DeepMRMD:0.8644867;iRNA_m5C:1.06668451849146e-10 49551 chr3 66431139 66431139 1 + C A UCEC 66431142 - 66431122 66431162 41 CGGAGCCGGGTGGGAGTGACCAAGAGCATTCTCCACATCAC CGGAGCCGGGTGGGAGTGACCAATAGCATTCTCCACATCAC < 41bp 0.880363003472656 0.577653100742872 0.38248643 0.091169685 prediction 0.605419805459567 Functional Loss - LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66431142 chr3:66431139 stopgain 0.030 0 24 hm5C_associated_SNPs_54199 0 0 1 0 0 Ribosome 0.500231671730614 0.50023174387666 0 0 hm5C_site_49551 DeepMRMD:0;iRNA_m5C:0 49552 chr12 7065331 7065331 1 + G T LUSC 7065328 + 7065308 7065348 41 ACCACAGCCGAGTGATCCTGCAGGGACGGGACAGTAACATC ACCACAGCCGAGTGATCCTGCAGTGACGGGACAGTAACATC < 41bp 0.802708730637221 0.412354829912598 0.6793787 0.24122724 prediction 0.605417461274443 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7065328 chr12:7065331 stopgain 1.000 0 24 hm5C_associated_SNPs_54200 0 0 0 0 2 chromatin 0.500231643437251 0.500231661586669 0.3587574 0 hm5C_site_49552 DeepMRMD:0.3587574;iRNA_m5C:0 49553 chr9 90503722 90503722 1 + G T LGG 90503720 + 90503700 90503740 41 TGCAGGAACTGATGTCTGCACAGAGGTGTCTTGCCTCCTGA TGCAGGAACTGATGTCTGCACATAGGTGTCTTGCCTCCTGA < 41bp 0.802706057647562 0.491269498827948 0.79441583 0.26948714 prediction 0.605412115295124 Functional Loss - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90503720 chr9:90503722 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_54201 0 0 0 0 0 exosome 0.500230331590096 0.500231667888748 0.58883166 0 hm5C_site_49553 DeepMRMD:0.58883166;iRNA_m5C:0 49554 chr10 44112250 44112250 1 + G T LGG 44112248 + 44112228 44112268 41 ACTGTGGGAAAGCCTTCGCTCAGAATGCAGCTCTTACTCGT ACTGTGGGAAAGCCTTCGCTCATAATGCAGCTCTTACTCGT < 41bp 0.825747570093209 0.523047502987092 0.6790208 0.051053345 prediction 0.605400134212234 Functional Loss - ZNF485 ENSG00000198298 CDS Human protein_coding chr10:44112248 chr10:44112250 nonsynonymous SNV 0.546 0 23 hm5C_associated_SNPs_54202 0 0 1 0 0 chromatin 0.500231642775904 0.500231638598451 0.3580416 8.3549058782495e-09 hm5C_site_49554 DeepMRMD:0.3580416;iRNA_m5C:8.3549058782495e-09 49555 chr1 12855879 12855879 1 + A C STAD 12855875 + 12855855 12855895 41 CTCACCACCTTCTACTTTGGCAGAAATTGCATGTCTATTGA CTCACCACCTTCTACTTTGGCAGACATTGCATGTCTATTGA < 41bp 0.802692572101109 0.4278903674956 0.793339 0.4764166 prediction 0.605385144202217 Functional Loss - PRAMEF1 ENSG00000116721 CDS Human protein_coding chr1:12855875 chr1:12855879 nonsynonymous SNV 0.002 4 25 hm5C_associated_SNPs_54203 0 0 0 0 0 unknown 0.500231643921092 0.500231643921101 0.586678 0 hm5C_site_49555 DeepMRMD:0.586678;iRNA_m5C:0 49556 chr6 28253453 28253453 1 + G T SKCM 28253451 + 28253431 28253471 41 CCCTGAAGTGTGAACCTCCACAGCGTCCTCAAGGGAACCCC CCCTGAAGTGTGAACCTCCACATCGTCCTCAAGGGAACCCC < 41bp 0.847140615631085 0.544465667186588 0.007004857 0.0021696389 prediction 0.605349896888993 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28253451 chr6:28253453 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_54204 0 0 0 0 1 nucleoplasm 0.500231643921092 0.500231643921092 0 0 hm5C_site_49556 DeepMRMD:0;iRNA_m5C:0 49557 chr2 96906238 96906238 1 + G T STAD 96906236 + 96906216 96906256 41 CATCTCGGGTCAACTCTTCTCAGGACCAGATCCAAGTCGCC CATCTCGGGTCAACTCTTCTCATGACCAGATCCAAGTCGCC < 41bp 0.826691840026462 0.524025057776063 0.75242364 0.12301588 prediction 0.605333564500799 Functional Loss - STARD7-AS1 ENSG00000204685 ncRNA_exonic Human processed_transcript chr2:96906236 chr2:96906238 . . 0 23 hm5C_associated_SNPs_54205 0 0 0 0 0 unknown 0.500231644235364 0.500231643921095 0.50484728 6.28537666358397e-10 hm5C_site_49557 DeepMRMD:0.50484728;iRNA_m5C:6.28537666358397e-10 49558 chr12 72667201 72667201 1 + C A HNSC 72667203 - 72667183 72667223 41 TTCAGCACCACCACTAAGACCTGGGTTTGCGGGTAGAGGAA TTCAGCACCACCACTAAGACCTTGGTTTGCGGGTAGAGGAA < 41bp 0.817620594019479 0.514963215928319 0.16442856 0.054706097 prediction 0.605314756182318 Functional Loss - TRHDE ENSG00000072657 CDS Human protein_coding chr12:72667203 chr12:72667201 nonsynonymous SNV 0.968 2 23 hm5C_associated_SNPs_54206 0 0 0 0 0 exosome 0.500231645705821 0.500231643921094 0 3.56945428769961e-09 hm5C_site_49558 DeepMRMD:0;iRNA_m5C:3.56945428769961e-09 49559 chr15 65916465 65916465 1 + G T SARC 65916463 + 65916443 65916483 41 CCGCAAGAGAGGTGGTTACTCCGGACAAAGCGGCTTCATTG CCGCAAGAGAGGTGGTTACTCCTGACAAAGCGGCTTCATTG < 41bp 0.827240340618387 0.524597069938013 0.8733742 0.23722798 prediction 0.605286541360748 Functional Loss - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65916463 chr15:65916465 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_54207 0 0 1 0 0 Endoplasmic reticulum 0.500231643921094 0.500231643921035 0.7467484 1.17239551400417e-13 hm5C_site_49559 DeepMRMD:0.7467484;iRNA_m5C:1.17239551400417e-13 49560 chrX 86067949 86067949 1 + G T LUSC 86067946 + 86067926 86067966 41 GGCATTGCCCGCTGGATTCCCTGGACCATTCATTTTTGCTG GGCATTGCCCGCTGGATTCCCTGTACCATTCATTTTTGCTG < 41bp 0.80263855728758 0.48795426813381 0.033091784 0.03814128 prediction 0.605277114575161 Functional Loss - DACH2 ENSG00000126733 CDS Human protein_coding chrX:86067946 chrX:86067949 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54208 0 0 0 0 3 exosome 0.500231649639619 0.500231643919247 0 1.14407452400656e-08 hm5C_site_49560 DeepMRMD:0;iRNA_m5C:1.14407452400656e-08 49561 chr19 42584835 42584835 1 + G T LUSC 42584833 + 42584813 42584853 41 CGAGGCGGCCCATGCAGCTGCTGGGCCTGGAGAGGTCCTGG CGAGGCGGCCCATGCAGCTGCTTGGCCTGGAGAGGTCCTGG < 41bp 0.827812759029568 0.525190497172913 0.54738444 0.41171387 prediction 0.60524452371331 Functional Loss - ZNF574 ENSG00000105732 CDS Human protein_coding chr19:42584833 chr19:42584835 nonsynonymous SNV 0.913 4 23 hm5C_associated_SNPs_54209 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.0947688799999999 0 hm5C_site_49561 DeepMRMD:0.0947688799999999;iRNA_m5C:0 49562 chr19 17417119 17417119 1 + G T PAAD 17417117 + 17417097 17417137 41 AGCACGGCTGGGTCCGGCGCCTGAGCACGCCGGCCGGCGTG AGCACGGCTGGGTCCGGCGCCTTAGCACGCCGGCCGGCGTG < 41bp 0.839134763204175 0.536514838040818 0.39467877 0.39990532 prediction 0.605239850326713 Functional Loss - MRPL34 ENSG00000130312 CDS Human protein_coding chr19:17417117 chr19:17417119 stoploss 0.970 0 23 hm5C_associated_SNPs_54210 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_49562 DeepMRMD:0;iRNA_m5C:0 49563 chr4 3446634 3446634 1 + G T SKCM 3446631 + 3446611 3446651 41 TCGGGCCTCAGCTGCCTGGCCTGGAACTCCGATCTGCTCTA TCGGGCCTCAGCTGCCTGGCCTGTAACTCCGATCTGCTCTA < 41bp 0.889442716290843 0.586837333763484 0.9196025 0.5951781 prediction 0.605210765054718 Functional Loss - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446631 chr4:3446634 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54211 0 0 0 0 2 cytosol 0.500231643977057 0.500231643922336 0.6488488 1.09441344875449e-10 hm5C_site_49563 DeepMRMD:0.6488488;iRNA_m5C:1.09441344875449e-10 49564 chr6 37418091 37418091 1 + A C COAD 37418087 + 37418067 37418107 41 CCACTGAAATTCCTGACACTCAGGAAATGAGCGATTGGATG CCACTGAAATTCCTGACACTCAGGCAATGAGCGATTGGATG < 41bp 0.802605299040242 0.405644450336917 0.90629005 0.86934066 prediction 0.605210598080485 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37418087 chr6:37418091 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_54212 0 0 1 0 2 Endoplasmic reticulum 0.50023164003752 0.500241177413404 0.0738987799999999 0 hm5C_site_49564 DeepMRMD:0.0738987799999999;iRNA_m5C:0 49565 chr17 40714478 40714478 1 + G T rs191068578 40714475 + 40714455 40714495 41 AGCCCCGAGGCGCCGTCTACCAGGCCCCGTCCCCTCCCCCG AGCCCCGAGGCGCCGTCTACCAGTCCCCGTCCCCTCCCCCG < 41bp 0.802603574027345 0.492927211346535 0.9124501 0.23578456 prediction 0.60520714805469 Functional Loss - COASY ENSG00000068120 CDS Human protein_coding chr17:40714475 chr17:40714478 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_54213 0 0 1 0 1 Ribosome 0.500231643921093 0.50023164779599 0.8249002 0 hm5C_site_49565 DeepMRMD:0.8249002;iRNA_m5C:0 49566 chr7 150095132 150095132 1 + G T UCEC 150095130 + 150095110 150095150 41 AGCAGCACCTGCTCAAGCACCAGCGCGTGCACCGCGCGGCC AGCAGCACCTGCTCAAGCACCATCGCGTGCACCGCGCGGCC < 41bp 0.802597577724492 0.493625397138953 0.763324 0.18487516 prediction 0.605195155448984 Functional Loss - ZNF775 ENSG00000196456 CDS Human protein_coding chr7:150095130 chr7:150095132 nonsynonymous SNV 0.915 1 23 hm5C_associated_SNPs_54214 0 0 0 0 0 Cytosol 0.500231643921108 0.500231643921698 0.526648 0 hm5C_site_49566 DeepMRMD:0.526648;iRNA_m5C:0 49567 chrX 11316895 11316895 1 + G T UCEC 11316893 + 11316873 11316913 41 CAAACCTCCCTCCGCCCGCCCAGCAGCCCTACCAGCCCCAG CAAACCTCCCTCCGCCCGCCCATCAGCCCTACCAGCCCCAG < 41bp 0.857145781300608 0.554552404664782 0.06533718 0.023550123 prediction 0.605186753271652 Functional Loss - AMELX ENSG00000125363 CDS Human protein_coding chrX:11316893 chrX:11316895 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_54215 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0 0 hm5C_site_49567 DeepMRMD:0;iRNA_m5C:0 49568 chr17 7324702 7324702 1 + G T SARC 7324700 + 7324680 7324720 41 AGGCAGAGGCGGCTCAGTACCAGCCTGTCCCAGCTCCCACC AGGCAGAGGCGGCTCAGTACCATCCTGTCCCAGCTCCCACC < 41bp 0.8455850822624 0.542997297649306 0.25314498 0.09030223 prediction 0.605175569226189 Functional Loss - SPEM1 ENSG00000181323 CDS Human protein_coding chr17:7324700 chr17:7324702 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_54216 0 0 0 0 0 exosome 0.500231643921092 0.500231643916764 0 8.6559648337925e-12 hm5C_site_49568 DeepMRMD:0;iRNA_m5C:8.6559648337925e-12 49569 chr19 39899218 39899218 1 + G T SARC 39899216 + 39899196 39899236 41 GACCCTGATGAATATGCCAGCAGCGGCAGCAGCCTGGGGGG GACCCTGATGAATATGCCAGCATCGGCAGCAGCCTGGGGGG < 41bp 0.844461214560566 0.54187691435474 0.86287224 0.2065295 prediction 0.605168600411652 Functional Loss - ZFP36 ENSG00000128016 CDS Human protein_coding chr19:39899216 chr19:39899218 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_54217 0 0 1 0 0 nucleus 0.500231643935759 0.500231643921092 0.72574448 2.93325363998065e-11 hm5C_site_49569 DeepMRMD:0.72574448;iRNA_m5C:2.93325363998065e-11 49570 chr9 135374919 135374919 1 + G T BLCA 135374917 + 135374897 135374937 41 ATGACATCCGCATCAGTGACCAGGATGACCGGCGCATGAAG ATGACATCCGCATCAGTGACCATGATGACCGGCGCATGAAG < 41bp 0.802583543430322 0.475960229062501 0.85266286 0.14209244 prediction 0.605167086860645 Functional Loss - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135374917 chr9:135374919 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_54218 0 0 0 0 1 nucleus 0.50025122087781 0.500230257420411 0.70532572 4.19269147970969e-05 hm5C_site_49570 DeepMRMD:0.70532572;iRNA_m5C:4.19269147970969e-05 49571 chr9 135374920 135374920 1 + G T BLCA 135374917 + 135374897 135374937 41 ATGACATCCGCATCAGTGACCAGGATGACCGGCGCATGAAG ATGACATCCGCATCAGTGACCAGTATGACCGGCGCATGAAG < 41bp 0.802583543430322 0.427848961489999 0.85266286 0.17124799 prediction 0.605167086860645 Functional Loss - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135374917 chr9:135374920 nonsynonymous SNV 0.996 0 24 hm5C_associated_SNPs_54219 0 0 0 0 1 nucleus 0.50025122087781 0.500231681545786 0.70532572 3.90786640476204e-05 hm5C_site_49571 DeepMRMD:0.70532572;iRNA_m5C:3.90786640476204e-05 49572 chr15 44671957 44671957 1 + G T LIHC 44671954 + 44671934 44671974 41 AGCAATCTCCCATCTTCCAACTGGACAACCTCTCTCCCCAA AGCAATCTCCCATCTTCCAACTGTACAACCTCTCTCCCCAA < 41bp 0.802574206335063 0.442899400114522 0.22581866 0.05934781 prediction 0.605148412670127 Functional Loss - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44671954 chr15:44671957 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_54220 0 0 1 0 2 Ribosome 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_49572 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 49573 chr10 134218766 134218766 1 + G T BLCA 134218763 + 134218743 134218783 41 GTCCCGCGGAGCCCGGTCATCAAGATCTCCTACAGCACGCC GTCCCGCGGAGCCCGGTCATCAATATCTCCTACAGCACGCC < 41bp 0.884274758020926 0.581703102002784 0.41974998 0.07251075 prediction 0.605143312036284 Functional Loss - PWWP2B ENSG00000171813 CDS Human protein_coding chr10:134218763 chr10:134218766 nonsynonymous SNV 0.987 3 24 hm5C_associated_SNPs_54221 0 0 0 0 0 chromatin 0.500231643898009 0.500231643921092 0 0 hm5C_site_49573 DeepMRMD:0;iRNA_m5C:0 49574 chr19 22785179 22785179 1 + G T rs76240421 22785177 + 22785157 22785197 41 GGCAGCTGAAGGAGCAAAGGCTGCGCTGCCGGTGCCTGGCT GGCAGCTGAAGGAGCAAAGGCTTCGCTGCCGGTGCCTGGCT < 41bp 0.809245710803412 0.50668146093445 0.38403434 0.2066276 prediction 0.605128499737924 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785177 chr19:22785179 . . 0 23 hm5C_associated_SNPs_54222 0 0 0 0 1 unknown 0.500231643921101 0.500231643921095 0 1.17683640610267e-14 hm5C_site_49574 DeepMRMD:0;iRNA_m5C:1.17683640610267e-14 49575 chr19 5778544 5778544 1 + G T SKCM 5778541 + 5778521 5778561 41 CCAAGCTGCTACGCACAGCACGCGGCCGCAGGATCAAGAAG CCAAGCTGCTACGCACAGCACGCTGCCGCAGGATCAAGAAG < 41bp 0.802547255756998 0.418050907754093 0.20852485 0.028360248 prediction 0.605094511513996 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5778541 chr19:5778544 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_54223 0 0 0 0 0 nucleus 0.500231644469734 0.500212764562223 0 3.77598150220759e-05 hm5C_site_49575 DeepMRMD:0;iRNA_m5C:3.77598150220759e-05 49576 chr1 158436059 158436059 1 + G T LUSC 158436056 + 158436036 158436076 41 CCTTCCTCCGTTGGAAGATACAAGACCTTCTCCACCTGTGC CCTTCCTCCGTTGGAAGATACAATACCTTCTCCACCTGTGC < 41bp 0.802535546401546 0.428880829865782 0.082093775 0.010073304 prediction 0.605071092803093 Functional Loss - OR10K1 ENSG00000173285 CDS Human protein_coding chr1:158436056 chr1:158436059 nonsynonymous SNV 0.916 4 24 hm5C_associated_SNPs_54224 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_49576 DeepMRMD:0;iRNA_m5C:0 49577 chr17 41352530 41352530 1 + G T UCEC 41352528 + 41352508 41352548 41 CTGGAGGGGAGAACCAGCCACAGGAGCACAGCATAAGTGAC CTGGAGGGGAGAACCAGCCACATGAGCACAGCATAAGTGAC < 41bp 0.802527546103491 0.483750357912266 0.46403825 0.1881237 prediction 0.605055092206982 Functional Loss - NBR1 ENSG00000188554 CDS Human protein_coding chr17:41352528 chr17:41352530 nonsynonymous SNV 0.773 0 23 hm5C_associated_SNPs_54225 0 0 1 0 1 Cytosol 0.500231643920942 0.500231670759783 0 0 hm5C_site_49577 DeepMRMD:0;iRNA_m5C:0 49578 chrY 6114391 6114391 1 + G T HNSC 6114388 + 6114368 6114408 41 GTGGCGTGGGTCGGGCAGCACAGGCCTTGGTGTGTGCGAGT GTGGCGTGGGTCGGGCAGCACAGTCCTTGGTGTGTGCGAGT < 41bp 0.885433034740414 0.582945687632727 0.8109313 0.40123522 prediction 0.604974694215374 Functional Loss - TSPY2 ENSG00000168757 CDS Human protein_coding chrY:6114388 chrY:6114391 nonsynonymous SNV 0.101 0 24 hm5C_associated_SNPs_54226 0 0 0 0 0 unknown 0.500231643878011 0.500231643931808 0.6218626 0 hm5C_site_49578 DeepMRMD:0.6218626;iRNA_m5C:0 49579 chr6 130761596 130761596 1 + G T STAD 130761593 + 130761573 130761613 41 AGCAACTGGTGGAGTGATAACTGGCCTGGCCGCCTTGAAAA AGCAACTGGTGGAGTGATAACTGTCCTGGCCGCCTTGAAAA < 41bp 0.802483227050984 0.434822353067383 0.6411118 0.24323544 prediction 0.604966454101967 Functional Loss - TMEM200A ENSG00000164484 CDS Human protein_coding chr6:130761593 chr6:130761596 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_54227 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.2822236 0 hm5C_site_49579 DeepMRMD:0.2822236;iRNA_m5C:0 49580 chr22 39125575 39125575 1 + G T LUAD 39125573 + 39125553 39125593 41 ACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAGGAG ACGAGACGAGGGGGGCCCGTCTTGTGGGCCAGCAGTAGGAG < 41bp 0.802482596218238 0.465806215765356 0.50631815 0.1497258 prediction 0.604965192436476 Functional Loss - GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125573 chr22:39125575 nonsynonymous SNV 0.008 1 23 hm5C_associated_SNPs_54228 0 0 1 0 1 Ribosome 0.500231643921105 0.500231643921092 0.0126363 2.48689957516035e-14 hm5C_site_49580 DeepMRMD:0.0126363;iRNA_m5C:2.48689957516035e-14 49581 chr16 1826089 1826089 1 + G T STAD 1826086 + 1826066 1826106 41 TAGGCGCTGGAGGCCTGCAGCACGGAGCGGGAGCGCATGGG TAGGCGCTGGAGGCCTGCAGCACTGAGCGGGAGCGCATGGG < 41bp 0.875002078901324 0.57252416806589 0.8791513 0.4052436 prediction 0.604955821670866 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1826086 chr16:1826089 synonymous SNV . 0 24 hm5C_associated_SNPs_54229 0 0 0 0 1 chromatin 0.500231643921092 0.500231643923103 0.7583026 0 hm5C_site_49581 DeepMRMD:0.7583026;iRNA_m5C:0 49582 chr1 46033774 46033774 1 + G T LUAD 46033772 + 46033752 46033792 41 CTAAGGGGCTGGTGCAGGCGCTGGGCCTGTCCAACTTCAAC CTAAGGGGCTGGTGCAGGCGCTTGGCCTGTCCAACTTCAAC < 41bp 0.802473696032357 0.478983941061121 0.061232567 0.03923306 prediction 0.604947392064714 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46033772 chr1:46033774 synonymous SNV . 0 23 hm5C_associated_SNPs_54230 0 0 1 1 1 Ribosome 0.500230146616267 0.500231643918576 0 0 hm5C_site_49582 DeepMRMD:0;iRNA_m5C:0 49583 chr19 55494392 55494392 1 + G T LUAD 55494390 + 55494370 55494410 41 GCCGGTTCCCGCAGGGCGCACAGCTGCGGGGCGCGCTGCGG GCCGGTTCCCGCAGGGCGCACATCTGCGGGGCGCGCTGCGG < 41bp 0.802472751117905 0.461919321230995 0.32435614 0.069801986 prediction 0.604945502235809 Functional Loss - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55494390 chr19:55494392 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_54231 0 0 0 0 0 Cytosol 0.500231643921572 0.500231643936582 0 0 hm5C_site_49583 DeepMRMD:0;iRNA_m5C:0 49584 chr5 76342281 76342281 1 + A C UCEC 76342277 + 76342257 76342297 41 AGGCCAAAATAGGCATTCATCACAAAAATAGTCCCCCCAAA AGGCCAAAATAGGCATTCATCACACAAATAGTCCCCCCAAA < 41bp 0.802472232347304 0.410944289657401 0.048345417 0.05376342 prediction 0.604944464694607 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76342277 chr5:76342281 nonsynonymous SNV 0.240 0 25 hm5C_associated_SNPs_54232 0 0 1 0 0 Ribosome 0.500390788725138 0.500231644481035 0 0.000318288488205587 hm5C_site_49584 DeepMRMD:0;iRNA_m5C:0.000318288488205587 49585 chr6 55266641 55266641 1 + G T UCEC 55266638 + 55266618 55266658 41 TCCTTCATCGATCCAAATACCTGGAGAACTCTGATTCATTA TCCTTCATCGATCCAAATACCTGTAGAACTCTGATTCATTA < 41bp 0.850844398633596 0.548372188902122 0.09229007 0.048535675 prediction 0.604944419462948 Functional Loss - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55266638 chr6:55266641 nonsynonymous SNV 0.038 3 24 hm5C_associated_SNPs_54233 0 0 0 0 1 Nucleus 0.500229998444924 0.500231643973067 0 0 hm5C_site_49585 DeepMRMD:0;iRNA_m5C:0 49586 chr7 102113378 102113378 1 + G T CESC 102113376 + 102113356 102113396 41 ATCCTGAAGTGGCCCCAGCCCTGGGCCCTTGGCCAGGTGGT ATCCTGAAGTGGCCCCAGCCCTTGGCCCTTGGCCAGGTGGT < 41bp 0.832078659674882 0.529616305597343 0.7198863 0.19967741 prediction 0.604924708155079 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102113376 chr7:102113378 nonsynonymous SNV 0.155 0 23 hm5C_associated_SNPs_54234 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.4397726 0 hm5C_site_49586 DeepMRMD:0.4397726;iRNA_m5C:0 49587 chr2 233271828 233271828 1 + G T UCEC 233271825 + 233271805 233271845 41 GCCGAGGCCCTGGGTGCCGCCAAGAAGCTGCAGCCTGCACA GCCGAGGCCCTGGGTGCCGCCAATAAGCTGCAGCCTGCACA < 41bp 0.886494682079806 0.584038317428301 0.39092866 0.3358026 prediction 0.604912729303009 Functional Loss - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233271825 chr2:233271828 nonsynonymous SNV 0.023 2 24 hm5C_associated_SNPs_54235 0 0 0 0 2 exosome 0.500231643921092 0.500231643920951 0 2.83106871279415e-13 hm5C_site_49587 DeepMRMD:0;iRNA_m5C:2.83106871279415e-13 49588 chr5 137684304 137684304 1 + G T rs534246277 137684301 + 137684281 137684321 41 TTTCTGGATCTCCTGCATGTCAGGAGCATCAGTGAGGCTTC TTTCTGGATCTCCTGCATGTCAGTAGCATCAGTGAGGCTTC < 41bp 0.8219835763217 0.519530914451174 0.898073 0.06526145 prediction 0.604905323741053 Functional Loss - FAM53C ENSG00000249971 ncRNA_intronic Human antisense chr5:137684301 chr5:137684304 . . 0 24 hm5C_associated_SNPs_54236 0 0 1 1 0 chromatin 0.500231643907164 0.500231635204755 0.796146 1.74048166989849e-08 hm5C_site_49588 DeepMRMD:0.796146;iRNA_m5C:1.74048166989849e-08 49589 chr11 5020432 5020432 1 + G T LUSC 5020429 + 5020409 5020449 41 CCATCTTAGCAGTGAATGACCTGGGGATGTCCCTGTCTACA CCATCTTAGCAGTGAATGACCTGTGGATGTCCCTGTCTACA < 41bp 0.881419410820272 0.578967331916964 0.4549644 0.059978843 prediction 0.604904157806615 Functional Loss - OR51L1 ENSG00000176798 CDS Human protein_coding chr11:5020429 chr11:5020432 nonsynonymous SNV 0.282 4 24 hm5C_associated_SNPs_54237 0 0 0 0 0 unknown 0.500231643921116 0.500231644706341 0 0 hm5C_site_49589 DeepMRMD:0;iRNA_m5C:0 49590 chr3 129251438 129251438 1 + G T LUAD 129251435 + 129251415 129251455 41 GCAGAGAAGGAGGTCACCCGCATGGTCATCATCATGGTCAT GCAGAGAAGGAGGTCACCCGCATTGTCATCATCATGGTCAT < 41bp 0.802450158020783 0.423650769027095 0.24091029 0.10378048 prediction 0.604900316041566 Functional Loss - RHO ENSG00000163914 CDS Human protein_coding chr3:129251435 chr3:129251438 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54238 0 0 0 0 1 Cytosol 0.500231643920843 0.500231644596165 0 0 hm5C_site_49590 DeepMRMD:0;iRNA_m5C:0 49591 chr1 11577619 11577619 1 + A T SARC 11577615 + 11577595 11577635 41 ATGCCTGCAGCTCTGGGCCTCTGGAGCCTCTACCTGGCACC ATGCCTGCAGCTCTGGGCCTCTGGTGCCTCTACCTGGCACC < 41bp 0.802449301355171 0.498509929529431 0.9194325 0.90499264 prediction 0.604898602710343 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11577615 chr1:11577619 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_54239 0 0 0 0 2 exosome 0.500231643971661 0.500231643849357 0.0288797199999999 2.44609221766723e-10 hm5C_site_49591 DeepMRMD:0.0288797199999999;iRNA_m5C:2.44609221766723e-10 49592 chr19 37203754 37203754 1 + G T GBM 37203752 + 37203732 37203772 41 AGAGCCATGGACATCATTTGCAGGTCATACCTGCTTGGGTG AGAGCCATGGACATCATTTGCATGTCATACCTGCTTGGGTG < 41bp 0.841905648823404 0.539465751162598 0.8520075 0.35853267 prediction 0.604879795321614 Functional Loss - ZNF567 ENSG00000189042 CDS Human protein_coding chr19:37203752 chr19:37203754 nonsynonymous SNV 0.974 1 23 hm5C_associated_SNPs_54240 0 0 1 0 1 chromatin 0.500231644964282 0.500231643921092 0.704015 2.08637951359947e-09 hm5C_site_49592 DeepMRMD:0.704015;iRNA_m5C:2.08637951359947e-09 49593 chr1 212798781 212798781 1 + C A LUAD 212798784 - 212798764 212798804 41 CATCCACATCATGTCTTCAGCTGGAATGCCACAGGTACTGC CATCCACATCATGTCTTCAGCTGTAATGCCACAGGTACTGC < 41bp 0.872230055058077 0.569790690075862 0.13592595 0.1113188 prediction 0.60487872996443 Functional Loss - FAM71A ENSG00000162771 CDS Human protein_coding chr1:212798784 chr1:212798781 nonsynonymous SNV 0.017 3 24 hm5C_associated_SNPs_54241 0 0 0 0 0 exosome 0.500231636405858 0.500231643868008 0 0 hm5C_site_49593 DeepMRMD:0;iRNA_m5C:0 49594 chr6 44336129 44336129 1 + G T COAD 44336126 + 44336106 44336146 41 TTCTCCACAGATATTGATCCCAGGAATGGAATCCCAAAGTT TTCTCCACAGATATTGATCCCAGTAATGGAATCCCAAAGTT < 41bp 0.80242453049864 0.43307333135968 0.46242052 0.35848898 prediction 0.60484906099728 Functional Loss - SPATS1 ENSG00000249481 CDS Human protein_coding chr6:44336126 chr6:44336129 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_54242 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_49594 DeepMRMD:0;iRNA_m5C:0 49595 chr3 102189341 102189341 1 + G T UCEC 102189338 + 102189318 102189358 41 CTCTGCTGGTCCCATCATTACTCGGAGTGGTAAGTGTGCTC CTCTGCTGGTCCCATCATTACTCTGAGTGGTAAGTGTGCTC < 41bp 0.802421122125905 0.449579730584713 0.4806848 0.29864743 prediction 0.60484224425181 Functional Loss - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189338 chr3:102189341 nonsynonymous SNV 0.707 4 24 hm5C_associated_SNPs_54243 0 0 0 0 1 exosome 0.500231556391313 0.500215838634969 0 3.14355126889154e-05 hm5C_site_49595 DeepMRMD:0;iRNA_m5C:3.14355126889154e-05 49596 chr12 58007068 58007068 1 + C A BLCA 58007071 - 58007051 58007091 41 CGGCAGCTCCTCTCCTGTGGCTAGAGCTGGCTCCAACATCC CGGCAGCTCCTCTCCTGTGGCTATAGCTGGCTCCAACATCC < 41bp 0.802419023400722 0.438987491613573 0.31101632 0.85550547 prediction 0.604838046801444 Functional Loss - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58007071 chr12:58007068 nonsynonymous SNV 0.674 0 24 hm5C_associated_SNPs_54244 0 0 0 0 0 chromatin 0.500231597243618 0.500231643921104 0 0 hm5C_site_49596 DeepMRMD:0;iRNA_m5C:0 49597 chr2 208619396 208619396 1 + A C rs73060879 208619392 + 208619372 208619412 41 GTCTTACTGCGTTGTCCAGGCTGGAGTGCAGTGGCTTTTCA GTCTTACTGCGTTGTCCAGGCTGGCGTGCAGTGGCTTTTCA < 41bp 0.802418530278893 0.45385755279126 0.38995427 0.4046253 prediction 0.604837060557786 Functional Loss - CCNYL1 ENSG00000163249 UTR3 Human protein_coding chr2:208619392 chr2:208619396 . . 0 25 hm5C_associated_SNPs_54245 0 0 1 0 0 Cytosol 0.500231644757169 0.500231653325191 0 0 hm5C_site_49597 DeepMRMD:0;iRNA_m5C:0 49598 chr3 127325529 127325529 1 + A C rs558806976 127325525 + 127325505 127325545 41 ACTGGCGTCCTGCCCCAGCTCAGCATGGTCAAGTACAACTG ACTGGCGTCCTGCCCCAGCTCAGCCTGGTCAAGTACAACTG < 41bp 0.912076688197331 0.609661288269439 0.23753595 0.14121482 prediction 0.604830799855786 Functional Loss - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127325525 chr3:127325529 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_54246 0 0 1 0 1 Cytosol 0.50023180338597 0.500229876792265 0 3.85318740958596e-06 hm5C_site_49598 DeepMRMD:0;iRNA_m5C:3.85318740958596e-06 49599 chr1 158259897 158259897 1 + G T GBM 158259895 + 158259875 158259915 41 GCTGCTAGCTCTTCTTCTCCCAGGTGGTGACAATGCAGACG GCTGCTAGCTCTTCTTCTCCCATGTGGTGACAATGCAGACG < 41bp 0.814194885641573 0.511779593671138 0.8788557 0.37949955 prediction 0.604830583940871 Functional Loss - CD1C ENSG00000158481 CDS Human protein_coding chr1:158259895 chr1:158259897 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_54247 0 0 0 0 1 exosome 0.500231720859369 0.500231700243082 0.7577114 4.12325740217767e-08 hm5C_site_49599 DeepMRMD:0.7577114;iRNA_m5C:4.12325740217767e-08 49600 chr12 109288140 109288140 1 + G T UCEC 109288137 + 109288117 109288157 41 CAGCCAGGCCGGGGGCAGATCATGAAGGTGAGTGTGAGGGT CAGCCAGGCCGGGGGCAGATCATTAAGGTGAGTGTGAGGGT < 41bp 0.802414068507419 0.426076011890582 0.5199285 0.4242897 prediction 0.604828137014838 Functional Loss - DAO ENSG00000110887 CDS Human protein_coding chr12:109288137 chr12:109288140 nonsynonymous SNV 0.953 0 24 hm5C_associated_SNPs_54248 0 0 0 0 1 Endoplasmic reticulum 0.500230359766919 0.500231643920694 0.039857 0 hm5C_site_49600 DeepMRMD:0.039857;iRNA_m5C:0 49601 chr2 79348721 79348721 1 + G T LUAD 79348719 + 79348699 79348739 41 CAGACAGAGTTGCCCCAGGCCCGGATCAGCTGCCCAGAAGG CAGACAGAGTTGCCCCAGGCCCTGATCAGCTGCCCAGAAGG < 41bp 0.802412249015629 0.471657847642274 0.29466376 0.06828874 prediction 0.604824498031259 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348719 chr2:79348721 nonsynonymous SNV 0.317 1 23 hm5C_associated_SNPs_54249 0 0 0 0 2 Ribosome 0.500231643921103 0.500231643937937 0 0 hm5C_site_49601 DeepMRMD:0;iRNA_m5C:0 49602 chr12 13061863 13061863 1 + G T LUSC 13061861 + 13061841 13061881 41 TCCATTGCCATCTGGGTGGCCTGGATCACCCTGCTCATGCT TCCATTGCCATCTGGGTGGCCTTGATCACCCTGCTCATGCT < 41bp 0.83666254406496 0.534259192745456 0.4603336 0.10931614 prediction 0.604806702639008 Functional Loss - GPRC5A ENSG00000013588 CDS Human protein_coding chr12:13061861 chr12:13061863 nonsynonymous SNV 0.738 5 23 hm5C_associated_SNPs_54250 0 0 1 0 0 Nucleus 0.500231641804054 0.500231643921008 0 0 hm5C_site_49602 DeepMRMD:0;iRNA_m5C:0 49603 chr16 19195144 19195144 1 + G T UCEC 19195142 + 19195122 19195162 41 ACCGTGCGCGTGATCGAGGCCAGGGACCTGCCACCTCCCAT ACCGTGCGCGTGATCGAGGCCATGGACCTGCCACCTCCCAT < 41bp 0.854915092259324 0.552517733403371 0.49497932 0.02284351 prediction 0.604794717711906 Functional Loss - SYT17 ENSG00000103528 CDS Human protein_coding chr16:19195142 chr16:19195144 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_54251 0 0 0 0 0 exosome 0.500231644172756 0.500231575549772 0 1.3724596792386e-07 hm5C_site_49603 DeepMRMD:0;iRNA_m5C:1.3724596792386e-07 49604 chr18 44013374 44013374 1 + G T STAD 44013372 + 44013352 44013392 41 CCTGCAGTTCCAGGACGTCACAGGTCCCTCCTTCCTACCTC CCTGCAGTTCCAGGACGTCACATGTCCCTCCTTCCTACCTC < 41bp 0.802380459647534 0.463914128894099 0.74490154 0.50779426 prediction 0.604760919295068 Functional Loss - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44013372 chr18:44013374 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_54252 0 0 0 0 1 nucleus 0.500231643921092 0.500231643921092 0.47421456 0 hm5C_site_49604 DeepMRMD:0.47421456;iRNA_m5C:0 49605 chr16 67229844 67229844 1 + G T PAAD 67229842 + 67229822 67229862 41 AGCAGCAGCAGCAACAGTAACAGCAGCAGTTCGTCCGGACC AGCAGCAGCAGCAACAGTAACATCAGCAGTTCGTCCGGACC < 41bp 0.833485627018305 0.531108231304196 0.45598167 0.100388885 prediction 0.604754791428217 Functional Loss - E2F4 ENSG00000205250 CDS Human protein_coding chr16:67229842 chr16:67229844 nonsynonymous SNV 0.350 1 23 hm5C_associated_SNPs_54253 0 0 1 0 1 Cytosol 0.500231641846393 0.500231646213217 0 0 hm5C_site_49605 DeepMRMD:0;iRNA_m5C:0 49606 chr12 52309893 52309893 1 + G T rs187902433 52309891 + 52309871 52309911 41 ACCCGAGAGTGGGCACCAAGCGGTACATGGCACCCGAGGTG ACCCGAGAGTGGGCACCAAGCGTTACATGGCACCCGAGGTG < 41bp 0.841134682529782 0.538764330582759 0.5073391 0.2975034 prediction 0.604740703894047 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309891 chr12:52309893 synonymous SNV . 0 23 hm5C_associated_SNPs_54254 1 0 0 0 1 Endoplasmic reticulum 0.500231643921452 0.500231643920907 0.0146782000000001 1.09068309939175e-12 hm5C_site_49606 DeepMRMD:0.0146782000000001;iRNA_m5C:1.09068309939175e-12 Hereditary hemorrhagic telangiectasia type 2 Hereditary hemorrhagic telangiectasia type 2 49607 chr11 5632149 5632149 1 + G T SARC 5632147 + 5632127 5632167 41 ACTGTAGTGTCCTGGGCTCCCAGCACTTCTCCTCTGGTAAG ACTGTAGTGTCCTGGGCTCCCATCACTTCTCCTCTGGTAAG < 41bp 0.802369475927708 0.494819026989744 0.25246248 0.1821604 prediction 0.604738951855417 Functional Loss - TRIM6 ENSG00000121236 CDS Human protein_coding chr11:5632147 chr11:5632149 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_54255 0 0 1 0 0 Nucleus 0.500231664950163 0.500231643921093 0 4.20581405258247e-08 hm5C_site_49607 DeepMRMD:0;iRNA_m5C:4.20581405258247e-08 49608 chrX 154348405 154348405 1 + G T UCEC 154348402 + 154348382 154348422 41 AAGAAAAGGAAGAGCTTATGCAAGAACTTTCTTCTCTAGAA AAGAAAAGGAAGAGCTTATGCAATAACTTTCTTCTCTAGAA < 41bp 0.802362870100396 0.459455046524039 0.35361618 0.08400303 prediction 0.604725740200792 Functional Loss - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154348402 chrX:154348405 stopgain 1.000 1 24 hm5C_associated_SNPs_54256 0 0 1 0 1 Ribosome 0.500231645289365 0.500231644155664 0 2.26740337616604e-09 hm5C_site_49608 DeepMRMD:0;iRNA_m5C:2.26740337616604e-09 49609 chr19 39114771 39114771 1 + G T CESC 39114769 + 39114749 39114789 41 CGGTCACCGCCCAGATCCTGCTGAAGGCCCTCACCAACTTG CGGTCACCGCCCAGATCCTGCTTAAGGCCCTCACCAACTTG < 41bp 0.802357152230774 0.477308671690379 0.12077883 0.12682801 prediction 0.604714304461548 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39114769 chr19:39114771 synonymous SNV . 0 23 hm5C_associated_SNPs_54257 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_49609 DeepMRMD:0;iRNA_m5C:0 49610 chr20 45354080 45354080 1 + G T LUAD 45354078 + 45354058 45354098 41 GGCCACGGCAGCGGGGAGTGCTGGTGTCCCTCTATGAGGCA GGCCACGGCAGCGGGGAGTGCTTGTGTCCCTCTATGAGGCA < 41bp 0.849719758689662 0.547373565482719 0.35258776 0.07233143 prediction 0.604692386413886 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45354078 chr20:45354080 synonymous SNV . 0 23 hm5C_associated_SNPs_54258 0 0 0 0 0 Nucleus 0.500231644038738 0.500231643938148 0 2.01180405667856e-10 hm5C_site_49610 DeepMRMD:0;iRNA_m5C:2.01180405667856e-10 49611 chr4 170634272 170634272 1 + G T SARC 170634269 + 170634249 170634289 41 AGAAGGTATCGTTGGCAGTTCTCGGGTGTGTTTTGCACAGC AGAAGGTATCGTTGGCAGTTCTCTGGTGTGTTTTGCACAGC < 41bp 0.802344184150058 0.443043137199563 0.19273698 0.23924237 prediction 0.604688368300116 Functional Loss - CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170634269 chr4:170634272 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_54259 0 0 1 0 1 Ribosome 0.500231642721078 0.500231610680014 0 6.40821287145599e-08 hm5C_site_49611 DeepMRMD:0;iRNA_m5C:6.40821287145599e-08 49612 chr11 209437 209437 1 + G T BRCA 209434 + 209414 209454 41 CGGAGCTGCTGGTCTCCGTCCTGGAACAGGGCTTGCCACCC CGGAGCTGCTGGTCTCCGTCCTGTAACAGGGCTTGCCACCC < 41bp 0.88472880832393 0.582394449201234 0.20377558 0.061531723 prediction 0.604668718245393 Functional Loss - RIC8A ENSG00000177963 CDS Human protein_coding chr11:209434 chr11:209437 stopgain 1.000 0 24 hm5C_associated_SNPs_54260 0 0 1 0 1 Ribosome 0.50023131268305 0.500231643945908 0 0 hm5C_site_49612 DeepMRMD:0;iRNA_m5C:0 49613 chr5 433022 433022 1 + G T LUAD 433019 + 432999 433039 41 GGGCCCCATGCCTGTGCCTCCGGGGTGGCCCTGACCTTGTC GGGCCCCATGCCTGTGCCTCCGGTGTGGCCCTGACCTTGTC < 41bp 0.802332407579855 0.42389874662467 0.8678079 0.21890092 prediction 0.60466481515971 Functional Loss - AHRR ENSG00000063438 CDS Human protein_coding chr5:433019 chr5:433022 nonsynonymous SNV 0.021 3 24 hm5C_associated_SNPs_54261 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921135 0.7356158 0 hm5C_site_49613 DeepMRMD:0.7356158;iRNA_m5C:0 49614 chr7 2473386 2473386 1 + G T UCEC 2473384 + 2473364 2473404 41 TTCCCCCCGAGCTACCGGAACAGGACCGCCAGCAGCTGGGA TTCCCCCCGAGCTACCGGAACATGACCGCCAGCAGCTGGGA < 41bp 0.828720824441131 0.526388999296611 0.27131832 0.06907314 prediction 0.604663650289042 Functional Loss - CHST12 ENSG00000136213 CDS Human protein_coding chr7:2473384 chr7:2473386 nonsynonymous SNV 0.952 4 23 hm5C_associated_SNPs_54262 0 0 1 0 0 nucleolus 0.500231643921092 0.50023164392109 0 5.55111512312578e-15 hm5C_site_49614 DeepMRMD:0;iRNA_m5C:5.55111512312578e-15 49615 chr11 33564118 33564118 1 + G T LUAD 33564116 + 33564096 33564136 41 CCCAACAGAGGGTCCCCATTCAGCAGGTTCATCCACACCTG CCCAACAGAGGGTCCCCATTCATCAGGTTCATCCACACCTG < 41bp 0.825898483587847 0.523583250599782 0.134527 0.06239918 prediction 0.604630465976129 Functional Loss - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33564116 chr11:33564118 nonsynonymous SNV 0.282 1 23 hm5C_associated_SNPs_54263 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0 0 hm5C_site_49615 DeepMRMD:0;iRNA_m5C:0 49616 chr10 118355776 118355776 1 + G T LUSC 118355774 + 118355754 118355794 41 TTCACCTCATTGGCCACAGCCTGGGAGCCCACGTGGCTGGA TTCACCTCATTGGCCACAGCCTTGGAGCCCACGTGGCTGGA < 41bp 0.856182338340709 0.553873989402641 0.8537946 0.03688711 prediction 0.604616697876136 Functional Loss - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118355774 chr10:118355776 synonymous SNV . 0 23 hm5C_associated_SNPs_54264 0 0 0 0 2 unknown 0.50023164420332 0.500231632669539 0.7075892 2.3067562304746e-08 hm5C_site_49616 DeepMRMD:0.7075892;iRNA_m5C:2.3067562304746e-08 49617 chr7 128851580 128851580 1 + G T UCEC 128851578 + 128851558 128851598 41 GGAGAGGAGCCATACTGCCCCAGGATATTTCTGTCACCCCT GGAGAGGAGCCATACTGCCCCATGATATTTCTGTCACCCCT < 41bp 0.834970148959689 0.532662195644087 0.53657454 0.06568405 prediction 0.604615906631204 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128851578 chr7:128851580 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54265 0 0 1 0 1 cytosol 0.500231643921092 0.500231638494095 0.0731490800000001 1.08539937038188e-08 hm5C_site_49617 DeepMRMD:0.0731490800000001;iRNA_m5C:1.08539937038188e-08 49618 chr10 99211645 99211645 1 + G T SKCM 99211643 + 99211623 99211663 41 CCTTTGAGCCTGTCTACTGGCTGGTAGACAACGTGATCCGC CCTTTGAGCCTGTCTACTGGCTTGTAGACAACGTGATCCGC < 41bp 0.838209293478831 0.535901517381421 0.2516976 0.08943537 prediction 0.60461555219482 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211643 chr10:99211645 synonymous SNV . 0 23 hm5C_associated_SNPs_54266 0 0 1 0 1 Cytosol 0.500231643921114 0.500231643921092 0 4.21884749357559e-14 hm5C_site_49618 DeepMRMD:0;iRNA_m5C:4.21884749357559e-14 49619 chr19 36207122 36207122 1 + G T ESCA 36207119 + 36207099 36207139 41 CCCGGCCCCTCCTGCTCGGTCTCGGCCCTATGCGTGCTCTG CCCGGCCCCTCCTGCTCGGTCTCTGCCCTATGCGTGCTCTG < 41bp 0.802305579848193 0.414481829725458 0.068850964 0.011291742 prediction 0.604611159696386 Functional Loss - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207119 chr19:36207122 nonsynonymous SNV 0.993 4 24 hm5C_associated_SNPs_54267 0 0 0 0 2 nucleus 0.5002308543602 0.500231643181084 0 0 hm5C_site_49619 DeepMRMD:0;iRNA_m5C:0 49620 chr1 236918429 236918429 1 + G T BRCA 236918427 + 236918407 236918447 41 ATAAGAACAACATCGACAAGCTGGAGGGAGACCATCAGCTC ATAAGAACAACATCGACAAGCTTGAGGGAGACCATCAGCTC < 41bp 0.805201991650578 0.50290536430298 0.22192144 0.105743796 prediction 0.604593254695196 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236918427 chr1:236918429 synonymous SNV . 0 23 hm5C_associated_SNPs_54268 0 0 0 0 1 chromatin 0.500234532479633 0.5002315900489 0 5.88486146546607e-06 hm5C_site_49620 DeepMRMD:0;iRNA_m5C:5.88486146546607e-06 49621 chr22 41573107 41573107 1 + G T LUAD 41573104 + 41573084 41573124 41 GCTACCATGCCAAGCACTGCCAGGAGAACAAATGCCCGGTG GCTACCATGCCAAGCACTGCCAGTAGAACAAATGCCCGGTG < 41bp 0.870211128569291 0.56793385617092 0.93827486 0.27629322 prediction 0.604554544796741 Functional Loss - EP300 ENSG00000100393 CDS Human protein_coding chr22:41573104 chr22:41573107 stopgain 1.000 1 24 hm5C_associated_SNPs_54269 0 0 1 0 0 Cytosol 0.500233712755767 0.500231645152826 0.87654972 4.13520588105065e-06 hm5C_site_49621 DeepMRMD:0.87654972;iRNA_m5C:4.13520588105065e-06 49622 chrX 48116711 48116711 1 + G T LGG 48116709 + 48116689 48116729 41 GACACCTTTGCAAAGAGACCCAGGGATGATGCTAAAGCATC GACACCTTTGCAAAGAGACCCATGGATGATGCTAAAGCATC < 41bp 0.802275888471106 0.478092017568552 0.9253401 0.8831643 prediction 0.604551776942213 Functional Loss - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48116709 chrX:48116711 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_54270 0 0 1 0 2 chromatin 0.500231643917796 0.500231643921048 0.0843516 0 hm5C_site_49622 DeepMRMD:0.0843516;iRNA_m5C:0 49623 chr2 69046528 69046528 1 + G T HNSC 69046525 + 69046505 69046545 41 CATCCCATGTAAGGCCTGCTCTCGGGTGGCAATTTGGGGAG CATCCCATGTAAGGCCTGCTCTCTGGTGGCAATTTGGGGAG < 41bp 0.878079357126595 0.57580512465827 0.33553874 0.20635363 prediction 0.604548464936651 Functional Loss - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046525 chr2:69046528 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_54271 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921088 0 9.10382880192628e-15 hm5C_site_49623 DeepMRMD:0;iRNA_m5C:9.10382880192628e-15 49624 chr22 29706700 29706700 1 + G T UCEC 29706697 + 29706677 29706717 41 TGGAGCATTACCTGGACAAGCACGACCCGTGCCGCTGCTCC TGGAGCATTACCTGGACAAGCACTACCCGTGCCGCTGCTCC < 41bp 0.802251636940947 0.428327719123054 0.23698121 0.20692891 prediction 0.604503273881894 Functional Loss - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29706697 chr22:29706700 nonsynonymous SNV 0.944 4 24 hm5C_associated_SNPs_54272 0 0 0 0 2 Ribosome 0.500231635336572 0.500231643921096 0 0 hm5C_site_49624 DeepMRMD:0;iRNA_m5C:0 49625 chr6 33365888 33365888 1 + G T BRCA 33365885 + 33365865 33365905 41 CCCTTCCCAGCTGCCTCTCTCAGGAAGCAGACTCAAGAGGA CCCTTCCCAGCTGCCTCTCTCAGTAAGCAGACTCAAGAGGA < 41bp 0.887485595084573 0.585237745016291 0.9291903 0.672212 prediction 0.604495700136564 Functional Loss - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33365885 chr6:33365888 nonsynonymous SNV 0.178 1 24 hm5C_associated_SNPs_54273 0 0 1 0 2 Cytosol 0.500231643920941 0.500231643523101 0.5139566 7.9568063249269e-10 hm5C_site_49625 DeepMRMD:0.5139566;iRNA_m5C:7.9568063249269e-10 49626 chr14 75537925 75537925 1 + G T UCEC 75537922 + 75537902 75537942 41 AGTGGGTGCAGATCCGAAGACTAGAAGCTGCAGGGGAGAGC AGTGGGTGCAGATCCGAAGACTATAAGCTGCAGGGGAGAGC < 41bp 0.802246438499489 0.42830536800932 0.26385087 0.4498935 prediction 0.604492876998977 Functional Loss - ZC2HC1C ENSG00000119703 CDS Human protein_coding chr14:75537922 chr14:75537925 stopgain 1.000 0 24 hm5C_associated_SNPs_54274 0 0 0 0 0 exosome 0.500231641122931 0.500231643921093 0 0 hm5C_site_49626 DeepMRMD:0;iRNA_m5C:0 49627 chr9 131670815 131670815 1 + G T READ 131670812 + 131670792 131670832 41 TCCTCAAGCTGGAGCTGATCCCCGACGTGACCATCCCGCCC TCCTCAAGCTGGAGCTGATCCCCTACGTGACCATCCCGCCC < 41bp 0.80224095107417 0.425823647314984 0.3333609 0.106632054 prediction 0.60448190214834 Functional Loss - LRRC8A ENSG00000136802 CDS Human protein_coding chr9:131670812 chr9:131670815 nonsynonymous SNV 0.940 4 24 hm5C_associated_SNPs_54275 0 0 0 0 0 Endoplasmic reticulum 0.500231825390988 0.500231648703484 0 3.53375006811874e-07 hm5C_site_49627 DeepMRMD:0;iRNA_m5C:3.53375006811874e-07 49628 chrX 153780352 153780352 1 + G T THYM 153780350 + 153780330 153780370 41 TGCTGCACCTGCCTTCAGAACAGGGCGCTCCTGAGACCCTC TGCTGCACCTGCCTTCAGAACATGGCGCTCCTGAGACCCTC < 41bp 0.852579264664096 0.550349059581802 0.83599997 0.22045812 prediction 0.604460410164587 Functional Loss - IKBKG ENSG00000073009 CDS Human other chrX:153780350 chrX:153780352 nonsynonymous SNV 0.095 1 23 hm5C_associated_SNPs_54276 0 0 1 0 1 chromatin 0.500231645954264 0.500231643921092 0.67199994 4.06634281802098e-09 hm5C_site_49628 DeepMRMD:0.67199994;iRNA_m5C:4.06634281802098e-09 49629 chr19 32873819 32873819 1 + A T LUSC 32873815 + 32873795 32873835 41 TCATATAGTTTAGAAAAAATCTCCAGTCTGGCCCCTCCTAG TCATATAGTTTAGAAAAAATCTCCTGTCTGGCCCCTCCTAG < 41bp 0.803303937863879 0.501081832905705 0.92291844 0.03276491 prediction 0.60444420991635 Functional Loss - ZNF507 ENSG00000168813 CDS Human protein_coding chr19:32873815 chr19:32873819 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_54277 0 0 1 0 0 Cytosol 0.500236981580273 0.500231866031843 0.84583688 1.02310968606023e-05 hm5C_site_49629 DeepMRMD:0.84583688;iRNA_m5C:1.02310968606023e-05 49630 chr2 102805702 102805702 1 + G T READ 102805700 + 102805680 102805720 41 TCATACAGTCTAGAATTCACCAGGACGAGACTTGGATTTTG TCATACAGTCTAGAATTCACCATGACGAGACTTGGATTTTG < 41bp 0.802215710563784 0.487556657216084 0.36544695 0.0075962543 prediction 0.604431421127568 Functional Loss - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102805700 chr2:102805702 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_54278 0 0 0 0 1 exosome 0.50023163957372 0.500231491588878 0 2.95969682762021e-07 hm5C_site_49630 DeepMRMD:0;iRNA_m5C:2.95969682762021e-07 49631 chr20 2637430 2637430 1 + G T SARC 2637427 + 2637407 2637447 41 CACACACATCCAGAGGTGCCCACGAGTGTATTCGGGGAGAA CACACACATCCAGAGGTGCCCACTAGTGTATTCGGGGAGAA < 41bp 0.877783525258509 0.575587793454474 0.26429912 0.08554271 prediction 0.604391463608069 Functional Loss - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2637427 chr20:2637430 synonymous SNV . 0 24 hm5C_associated_SNPs_54279 0 0 1 1 1 Cytosol 0.500264864406948 0.500231647324514 0 6.64341648670685e-05 hm5C_site_49631 DeepMRMD:0;iRNA_m5C:6.64341648670685e-05 49632 chr15 22969309 22969309 1 + G T STAD 22969306 + 22969286 22969326 41 AGGATCACCCTGCACGTCTTCTGGGAGCTCAACTATGACTT AGGATCACCCTGCACGTCTTCTGTGAGCTCAACTATGACTT < 41bp 0.802192094114069 0.431365105248502 0.37279335 0.050008535 prediction 0.604384188228138 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22969306 chr15:22969309 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_54280 0 0 1 0 1 Cytosol 0.500231643915716 0.500231643072709 0 1.68601554939585e-09 hm5C_site_49632 DeepMRMD:0;iRNA_m5C:1.68601554939585e-09 49633 chr15 92981726 92981726 1 + G T UCEC 92981724 + 92981704 92981744 41 AACCTCTACGAGCTCCTCCCCAGGACTTCGCCACTGAAGAA AACCTCTACGAGCTCCTCCCCATGACTTCGCCACTGAAGAA < 41bp 0.802189835453175 0.471590668422314 0.5165256 0.08788568 prediction 0.60437967090635 Functional Loss - ST8SIA2 ENSG00000140557 CDS Human protein_coding chr15:92981724 chr15:92981726 nonsynonymous SNV 0.948 4 23 hm5C_associated_SNPs_54281 0 0 0 0 0 Nucleus 0.500231643767558 0.500231601396327 0.0330512000000001 8.47424621586157e-08 hm5C_site_49633 DeepMRMD:0.0330512000000001;iRNA_m5C:8.47424621586157e-08 49634 chr19 55855091 55855091 1 + G T UCEC 55855089 + 55855069 55855109 41 GCTGCTGGTGGGCTGCATTGCAGAGCTGCGGGAGGCAGATG GCTGCTGGTGGGCTGCATTGCATAGCTGCGGGAGGCAGATG < 41bp 0.802167024423551 0.463882307532559 0.89529777 0.39472198 prediction 0.604334048847102 Functional Loss - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55855089 chr19:55855091 stopgain 0.733 0 23 hm5C_associated_SNPs_54282 0 0 1 0 1 chromatin 0.500231643917286 0.500231643652467 0.79059554 5.29638333190974e-10 hm5C_site_49634 DeepMRMD:0.79059554;iRNA_m5C:5.29638333190974e-10 49635 chr3 183994316 183994316 1 + G T PAAD 183994313 + 183994293 183994333 41 CTTCGGGATGAAGACGCACCCGAGACCCCCGTAGAGGGCGG CTTCGGGATGAAGACGCACCCGATACCCCCGTAGAGGGCGG < 41bp 0.802122651564906 0.447855426808033 0.8312852 0.112974584 prediction 0.604245303129813 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:183994313 chr3:183994316 nonsynonymous SNV 0.979 1 24 hm5C_associated_SNPs_54283 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.6625704 0 hm5C_site_49635 DeepMRMD:0.6625704;iRNA_m5C:0 49636 chr1 101186170 101186170 1 + A T TGCT 101186166 + 101186146 101186186 41 GAACCCAGATAGATAGTCCACTGAATGGGAAGGTGACGAAT GAACCCAGATAGATAGTCCACTGATTGGGAAGGTGACGAAT < 41bp 0.808131523470316 0.506010027116312 0.35505128 0.25509837 prediction 0.604242992708009 Functional Loss - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101186166 chr1:101186170 nonsynonymous SNV 0.394 3 25 hm5C_associated_SNPs_54284 0 0 0 0 0 exosome 0.500231643921092 0.500231643919168 0 3.84892118177049e-12 hm5C_site_49636 DeepMRMD:0;iRNA_m5C:3.84892118177049e-12 49637 chr1 10477123 10477123 1 + G T STAD 10477121 + 10477101 10477141 41 GCAAAAAGCTGAAGGGTCCCCAGAAGTTCCAGTTTGATGGT GCAAAAAGCTGAAGGGTCCCCATAAGTTCCAGTTTGATGGT < 41bp 0.836127560713037 0.534007572072831 0.8417783 0.26314163 prediction 0.604239977280411 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10477121 chr1:10477123 nonsynonymous SNV 0.017 0 23 hm5C_associated_SNPs_54285 0 0 1 0 2 Cytosol 0.500231643921101 0.500231643921092 0.6835566 1.70974345792274e-14 hm5C_site_49637 DeepMRMD:0.6835566;iRNA_m5C:1.70974345792274e-14 49638 chr12 21331906 21331906 1 + G T LUSC 21331903 + 21331883 21331923 41 GTCCAATCATTGGCTTTACCCTGGGATCTCTGTTTTCTAAA GTCCAATCATTGGCTTTACCCTGTGATCTCTGTTTTCTAAA < 41bp 0.802111308925883 0.441481758592465 0.6033173 0.06620982 prediction 0.604222617851766 Functional Loss - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21331903 chr12:21331906 stopgain 0.081 0 24 hm5C_associated_SNPs_54286 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.2066346 0 hm5C_site_49638 DeepMRMD:0.2066346;iRNA_m5C:0 49639 chr1 181058850 181058850 1 + G T SARC 181058848 + 181058828 181058868 41 GGGAACGTGGCTAACCTCATCAGCATCTTCGGTTCCAGTTT GGGAACGTGGCTAACCTCATCATCATCTTCGGTTCCAGTTT < 41bp 0.802100641769419 0.494522527458463 0.76309776 0.2544508 prediction 0.604201283538837 Functional Loss - IER5 ENSG00000162783 CDS Human protein_coding chr1:181058848 chr1:181058850 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54287 0 0 1 0 0 chromatin 0.500231643922268 0.500230181185045 0.52619552 2.92547444624702e-06 hm5C_site_49639 DeepMRMD:0.52619552;iRNA_m5C:2.92547444624702e-06 49640 chr15 41148117 41148117 1 + G T UCEC 41148114 + 41148094 41148134 41 CTGCGTGGACCTGCCAGACACAGGACTCTGCAAGGAGAGCA CTGCGTGGACCTGCCAGACACAGTACTCTGCAAGGAGAGCA < 41bp 0.884913097216993 0.582814650829927 0.8871715 0.6316185 prediction 0.604196892774132 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41148114 chr15:41148117 nonsynonymous SNV 0.889 4 24 hm5C_associated_SNPs_54288 0 0 0 0 1 Ribosome 0.50023198231382 0.500231719679843 0.511106 5.25267953133124e-07 hm5C_site_49640 DeepMRMD:0.511106;iRNA_m5C:5.25267953133124e-07 49641 chr3 37988590 37988590 1 + G T UCEC 37988588 + 37988568 37988608 41 TTAAAGAAGCAGAGGAGCCGCAGCATCCTTAGCTCCTTCTT TTAAAGAAGCAGAGGAGCCGCATCATCCTTAGCTCCTTCTT < 41bp 0.827663891598422 0.525592527579365 0.12455547 0.06685543 prediction 0.604142728038114 Functional Loss - CTDSPL ENSG00000144677 CDS Human protein_coding chr3:37988588 chr3:37988590 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_54289 0 0 1 0 1 Cytosol 0.500231640029001 0.50023164392109 0 0 hm5C_site_49641 DeepMRMD:0;iRNA_m5C:0 49642 chr7 49815161 49815161 1 + G T OV 49815159 + 49815139 49815179 41 GGCCCAGGCACCAGAGCAGCCGGGCCAGGAGAAGCGTGAGC GGCCCAGGCACCAGAGCAGCCGTGCCAGGAGAAGCGTGAGC < 41bp 0.802067786972943 0.469955228347499 0.4434378 0.34982097 prediction 0.604135573945886 Functional Loss - VWC2 ENSG00000188730 CDS Human protein_coding chr7:49815159 chr7:49815161 nonsynonymous SNV 0.288 2 23 hm5C_associated_SNPs_54290 0 0 0 0 0 exosome 0.500231643922015 0.500231644109978 0 0 hm5C_site_49642 DeepMRMD:0;iRNA_m5C:0 49643 chr21 34805074 34805074 1 + C A UCEC 34805076 - 34805056 34805096 41 CAGGCTCCTGCCAGCACCGACAGCAACGAAAATGTTCCCAC CAGGCTCCTGCCAGCACCGACATCAACGAAAATGTTCCCAC < 41bp 0.81457288293125 0.512523099034832 0.21047479 0.064404875 prediction 0.604099567792836 Functional Loss - IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34805076 chr21:34805074 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_54291 0 0 1 0 1 Endoplasmic reticulum 0.500231643920372 0.500231544302932 0 1.99234879261212e-07 hm5C_site_49643 DeepMRMD:0;iRNA_m5C:1.99234879261212e-07 Parkinson's disease 49644 chr17 41165103 41165103 1 + G T COAD 41165100 + 41165080 41165120 41 CCAAGATCCCCCTGGTATTCCGAGGACACACCCAGCAGGAC CCAAGATCCCCCTGGTATTCCGATGACACACCCAGCAGGAC < 41bp 0.802048474853569 0.409381147877495 0.8114166 0.2137287 prediction 0.604096949707139 Functional Loss - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41165100 chr17:41165103 stopgain 0.679 0 24 hm5C_associated_SNPs_54292 0 0 1 0 1 Cytosol 0.500230967636504 0.500231643917805 0.6228332 0 hm5C_site_49644 DeepMRMD:0.6228332;iRNA_m5C:0 49645 chrX 109694473 109694473 1 + G T COAD 109694470 + 109694450 109694490 41 AGTTATCCCCAATTCTAATGCAAGATATGAATCCTGGAGTG AGTTATCCCCAATTCTAATGCAATATATGAATCCTGGAGTG < 41bp 0.80203397573377 0.416938932812403 0.3549742 0.15254349 prediction 0.60406795146754 Functional Loss - RTL9 ENSG00000243978 CDS Human protein_coding chrX:109694470 chrX:109694473 nonsynonymous SNV 0.808 3 24 hm5C_associated_SNPs_54293 0 0 0 0 0 unknown 0.500231643921092 0.500231644702003 0 0 hm5C_site_49645 DeepMRMD:0;iRNA_m5C:0 49646 chr1 111857983 111857983 1 + G T CESC 111857980 + 111857960 111858000 41 GCCAGTATGAGTTTGACGGGCTGGACTTTGACTGGGAGTAC GCCAGTATGAGTTTGACGGGCTGTACTTTGACTGGGAGTAC < 41bp 0.802033524351222 0.444726501913781 0.22588465 0.14073956 prediction 0.604067048702443 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111857980 chr1:111857983 nonsynonymous SNV 0.991 4 24 hm5C_associated_SNPs_54294 0 0 0 0 2 exosome 0.500231643920225 0.500231643779755 0 2.80940826158371e-10 hm5C_site_49646 DeepMRMD:0;iRNA_m5C:2.80940826158371e-10 49647 chr11 56086209 56086209 1 + G T LUAD 56086206 + 56086186 56086226 41 TCATGTCACGAAGGGTATGTCAGGTGCTGGTAGCAATCCCT TCATGTCACGAAGGGTATGTCAGTTGCTGGTAGCAATCCCT < 41bp 0.879052503923971 0.577020376778879 0.8991207 0.33589688 prediction 0.604064254290184 Functional Loss - OR8K3 ENSG00000181689 CDS Human other chr11:56086206 chr11:56086209 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_54295 0 0 0 0 0 unknown 0.500339986216562 0.500231363449995 0.7982414 0.000217245533133292 hm5C_site_49647 DeepMRMD:0.7982414;iRNA_m5C:0.000217245533133292 49648 chr19 58967703 58967703 1 + G T UCEC 58967700 + 58967680 58967720 41 GACTGTGGCAAGGGTTTCGCCAAGGGCGCCGTGCTGCTCAG GACTGTGGCAAGGGTTTCGCCAATGGCGCCGTGCTGCTCAG < 41bp 0.884766691581493 0.582735756662502 0.92912614 0.4886996 prediction 0.60406186983798 Functional Loss - ZNF324B ENSG00000249471 CDS Human protein_coding chr19:58967700 chr19:58967703 nonsynonymous SNV 0.163 3 24 hm5C_associated_SNPs_54296 0 0 0 0 0 exosome 0.500231643921093 0.500231643900276 0.85825228 4.16324752450237e-11 hm5C_site_49648 DeepMRMD:0.85825228;iRNA_m5C:4.16324752450237e-11 49649 chr15 58855754 58855754 1 + A C OV 58855750 + 58855730 58855770 41 CGTATTCCTTTCTTATCACGCTGGATGTGGATATCGGCGAG CGTATTCCTTTCTTATCACGCTGGCTGTGGATATCGGCGAG < 41bp 0.802030415578853 0.409089068547104 0.2156229 0.17345661 prediction 0.604060831157707 Functional Loss - LIPC ENSG00000166035 CDS Human protein_coding chr15:58855750 chr15:58855754 nonsynonymous SNV 0.054 3 25 hm5C_associated_SNPs_54297 0 0 0 0 1 Endoplasmic reticulum 0.500231643710094 0.500231643690635 0 3.89173138160004e-11 hm5C_site_49649 DeepMRMD:0;iRNA_m5C:3.89173138160004e-11 49650 chr4 3422412 3422412 1 + G T UCEC 3422410 + 3422390 3422430 41 GCCTGTGTCGCCGAGAGTCGCAGGGCTCTGTGTCCTCTGCG GCCTGTGTCGCCGAGAGTCGCATGGCTCTGTGTCCTCTGCG < 41bp 0.827407871280659 0.525380778282164 0.9388696 0.5223008 prediction 0.60405418599699 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3422410 chr4:3422412 nonsynonymous SNV 0.632 3 23 hm5C_associated_SNPs_54298 0 0 1 0 2 Nucleus 0.500231685978838 0.500231643857431 0.8331376 8.42428149461227e-08 hm5C_site_49650 DeepMRMD:0.8331376;iRNA_m5C:8.42428149461227e-08 49651 chr11 92714731 92714731 1 + G T LUAD 92714728 + 92714708 92714748 41 GCCCTGGGGGAGGAGCACTGCAAGGCCAGCGCCTTTGTGAT GCCCTGGGGGAGGAGCACTGCAATGCCAGCGCCTTTGTGAT < 41bp 0.80202180180339 0.414899425464948 0.80528975 0.3248549 prediction 0.60404360360678 Functional Loss - MTNR1B ENSG00000134640 CDS Human protein_coding chr11:92714728 chr11:92714731 nonsynonymous SNV 0.976 2 24 hm5C_associated_SNPs_54299 0 0 0 0 0 unknown 0.500231643921092 0.500231644333728 0.6105795 0 hm5C_site_49651 DeepMRMD:0.6105795;iRNA_m5C:0 49652 chr1 147380384 147380384 1 + G T ESCA 147380382 + 147380362 147380402 41 GGGCACGCGGTGCACTACGTCCGCATGGAGGAGAAGCGCAA GGGCACGCGGTGCACTACGTCCTCATGGAGGAGAAGCGCAA < 41bp 0.802011448381085 0.482927548290011 0.07405436 0.04407057 prediction 0.60402289676217 Functional Loss - GJA8 ENSG00000121634 CDS Human protein_coding chr1:147380382 chr1:147380384 nonsynonymous SNV 0.982 5 23 hm5C_associated_SNPs_54300 0 0 0 0 0 unknown 0.500231643921092 0.500231625041886 0 3.77584126187713e-08 hm5C_site_49652 DeepMRMD:0;iRNA_m5C:3.77584126187713e-08 49653 chr12 100717379 100717379 1 + G T UCEC 100717376 + 100717356 100717396 41 CATGAAAAACGCTTTGATACCAAGAATTAAAAATGCTTGTC CATGAAAAACGCTTTGATACCAATAATTAAAAATGCTTGTC < 41bp 0.86020350162707 0.558197369505701 0.84425116 0.35183755 prediction 0.604012264242739 Functional Loss - SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100717376 chr12:100717379 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54301 0 0 1 0 2 chromatin 0.500231643936929 0.500231643634708 0.68850232 6.04442496054958e-10 hm5C_site_49653 DeepMRMD:0.68850232;iRNA_m5C:6.04442496054958e-10 49654 chr7 53104158 53104158 1 + G T SKCM 53104156 + 53104136 53104176 41 CAGCCCGCCCCATCCGCCATCTGGGACTTCTGGGAGGCGAC CAGCCCGCCCCATCCGCCATCTTGGACTTCTGGGAGGCGAC < 41bp 0.80200374505526 0.477610026415009 0.84760445 0.17702311 prediction 0.60400749011052 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53104156 chr7:53104158 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_54302 0 0 0 0 0 unknown 0.500231643883877 0.500231643939866 0.6952089 0 hm5C_site_49654 DeepMRMD:0.6952089;iRNA_m5C:0 49655 chr10 135044254 135044254 1 + G T rs142938992 135044252 + 135044232 135044272 41 TGGGCGACAACGGGCGCAAACGGCCTCGCCGCCGCTCCCCG TGGGCGACAACGGGCGCAAACGTCCTCGCCGCCGCTCCCCG < 41bp 0.80199561874353 0.492869180901859 0.89357555 0.77717614 prediction 0.603991237487061 Functional Loss - UTF1 ENSG00000171794 CDS Human protein_coding chr10:135044252 chr10:135044254 synonymous SNV . 0 23 hm5C_associated_SNPs_54303 0 0 0 0 1 exosome 0.500231643920733 0.500231643921093 0.23279882 0 hm5C_site_49655 DeepMRMD:0.23279882;iRNA_m5C:0 49656 chr16 71570718 71570718 1 + G T HNSC 71570716 + 71570696 71570736 41 AGCCCGAGCGCATGCACGTGCTGGTTCTGTCTTCCTGGCGC AGCCCGAGCGCATGCACGTGCTTGTTCTGTCTTCCTGGCGC < 41bp 0.801986913087532 0.480095975283656 0.31082296 0.28150806 prediction 0.603973826175063 Functional Loss - CHST4 ENSG00000140835 CDS Human protein_coding chr16:71570716 chr16:71570718 synonymous SNV . 0 23 hm5C_associated_SNPs_54304 0 0 0 0 0 exosome 0.500231641014759 0.500231621860218 0 3.83090814626286e-08 hm5C_site_49656 DeepMRMD:0;iRNA_m5C:3.83090814626286e-08 49657 chr7 94294955 94294955 1 + A C rs559209797 94294951 + 94294931 94294971 41 GCCGCCACAGCCGCCGCCTCCACCACCACCACCGCCGCCGC GCCGCCACAGCCGCCGCCTCCACCCCCACCACCGCCGCCGC < 41bp 0.801986897926656 0.417911255185183 0.15881169 0.16684625 prediction 0.603973795853313 Functional Loss - PEG10 ENSG00000242265 UTR3 Human protein_coding chr7:94294951 chr7:94294955 . . 0 25 hm5C_associated_SNPs_54305 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_49657 DeepMRMD:0;iRNA_m5C:0 49658 chr19 51628912 51628912 1 + G T GBM 51628909 + 51628889 51628929 41 ACCCTGGAGTCCGGCTGCCCCCAGAATCTGACCTGCTCTGT ACCCTGGAGTCCGGCTGCCCCCATAATCTGACCTGCTCTGT < 41bp 0.801984162896292 0.425366471065616 0.66106415 0.31139946 prediction 0.603968325792584 Functional Loss - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51628909 chr19:51628912 nonsynonymous SNV 0.014 0 24 hm5C_associated_SNPs_54306 0 0 0 0 1 exosome 0.500231643917698 0.500225363950213 0.3221283 1.25599349696248e-05 hm5C_site_49658 DeepMRMD:0.3221283;iRNA_m5C:1.25599349696248e-05 49659 chr12 9986031 9986031 1 + G T UCEC 9986028 + 9986008 9986048 41 TAATAAGGACCTTTGTGCTTCGAGATCTGCAGACCAGACAG TAATAAGGACCTTTGTGCTTCGATATCTGCAGACCAGACAG < 41bp 0.857508158466904 0.555526971772146 0.7161313 0.22077426 prediction 0.603962373389516 Functional Loss - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9986028 chr12:9986031 nonsynonymous SNV 0.005 1 24 hm5C_associated_SNPs_54307 0 0 0 0 1 exosome 0.500229895835397 0.500231643908328 0.4322626 0 hm5C_site_49659 DeepMRMD:0.4322626;iRNA_m5C:0 49660 chr9 135073725 135073725 1 + A T LUSC 135073721 + 135073701 135073741 41 TCCAGCGCGCACCGCGTGCTCTGCACCGAGGAGTACTCGCG TCCAGCGCGCACCGCGTGCTCTGCTCCGAGGAGTACTCGCG < 41bp 0.834494989271028 0.532516300414311 0.12039173 0.07797569 prediction 0.603957377713435 Functional Loss - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135073721 chr9:135073725 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_54308 0 0 0 0 0 exosome 0.500231644643802 0.500231644023015 0 1.24157284453474e-09 hm5C_site_49660 DeepMRMD:0;iRNA_m5C:1.24157284453474e-09 49661 chr17 75196731 75196731 1 + G T STAD 75196729 + 75196709 75196749 41 GGTCCTTCAGGATTACTACGCGGGAGGCTGGCATCATCACG GGTCCTTCAGGATTACTACGCGTGAGGCTGGCATCATCACG < 41bp 0.835548692325013 0.533575432078732 0.9079273 0.3719321 prediction 0.603946520492563 Functional Loss - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75196729 chr17:75196731 stopgain 0.983 1 23 hm5C_associated_SNPs_54309 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643920998 0.8158546 1.88293824976427e-13 hm5C_site_49661 DeepMRMD:0.8158546;iRNA_m5C:1.88293824976427e-13 49662 chr11 103908335 103908335 1 + G T LUSC 103908332 + 103908312 103908352 41 TTTGAAGGCTTTTGTTGACTCGGGCGCCCAGATGACCATTA TTTGAAGGCTTTTGTTGACTCGGTCGCCCAGATGACCATTA < 41bp 0.801961575861051 0.428979714951881 0.7971467 0.12578619 prediction 0.603923151722102 Functional Loss - DDI1 ENSG00000170967 CDS Human protein_coding chr11:103908332 chr11:103908335 nonsynonymous SNV 0.933 5 24 hm5C_associated_SNPs_54310 0 0 0 0 0 exosome 0.5002316439211 0.500231643921093 0.5942934 1.4432899320127e-14 hm5C_site_49662 DeepMRMD:0.5942934;iRNA_m5C:1.4432899320127e-14 49663 chr17 78023892 78023892 1 + G T UCEC 78023890 + 78023870 78023910 41 CTACCAAGCAGAGCCGAGCCCAGCGGCAGGAGCTGGGGGTG CTACCAAGCAGAGCCGAGCCCATCGGCAGGAGCTGGGGGTG < 41bp 0.801960992314067 0.451423220955701 0.9092442 0.52588415 prediction 0.603921984628133 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78023890 chr17:78023892 nonsynonymous SNV 0.317 2 23 hm5C_associated_SNPs_54311 0 0 1 0 1 exosome 0.500233151344604 0.500231512056536 0.7667201 3.27857613457994e-06 hm5C_site_49663 DeepMRMD:0.7667201;iRNA_m5C:3.27857613457994e-06 49664 chr16 88737820 88737820 1 + G T rs186120887 88737818 + 88737798 88737838 41 CTTTCCTGGCCTCTTCAGATCAGGGTGGCTGTTCTTGGGTG CTTTCCTGGCCTCTTCAGATCATGGTGGCTGTTCTTGGGTG < 41bp 0.840861851004447 0.538902875923894 0.9481888 0.69039696 prediction 0.603917950161107 Functional Loss - SNAI3-AS1 ENSG00000260630 ncRNA_exonic Human antisense chr16:88737818 chr16:88737820 . . 0 23 hm5C_associated_SNPs_54312 0 0 0 0 1 unknown 0.500231643921092 0.500231643921335 0.51558368 0 hm5C_site_49664 DeepMRMD:0.51558368;iRNA_m5C:0 49665 chr20 2397970 2397970 1 + G T LUAD 2397968 + 2397948 2397988 41 GAGAATCTGGATCCGCAGGGCTGGGGGTCGCTGTCTCTGGC GAGAATCTGGATCCGCAGGGCTTGGGGTCGCTGTCTCTGGC < 41bp 0.850955907646664 0.548997416188898 0.8007101 0.40817288 prediction 0.603916982915532 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2397968 chr20:2397970 nonsynonymous SNV 0.031 2 23 hm5C_associated_SNPs_54313 0 0 0 0 0 exosome 0.500231643919727 0.500231643921292 0.6014202 0 hm5C_site_49665 DeepMRMD:0.6014202;iRNA_m5C:0 49666 chr17 78399393 78399393 1 + G T BLCA 78399390 + 78399370 78399410 41 CGCCTGACTTGCTGCTGCTGCAGGTTCCGGATCCCAGAGCC CGCCTGACTTGCTGCTGCTGCAGTTTCCGGATCCCAGAGCC < 41bp 0.801956643262268 0.42224745489569 0.8101193 0.5251561 prediction 0.603913286524536 Functional Loss - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78399390 chr17:78399393 nonsynonymous SNV 0.632 0 24 hm5C_associated_SNPs_54314 0 0 0 0 1 Ribosome 0.500231638895213 0.500231643921112 0.5699264 0 hm5C_site_49666 DeepMRMD:0.5699264;iRNA_m5C:0 49667 chr1 221053271 221053271 1 + G T LUAD 221053268 + 221053248 221053288 41 TGGTCGGCCGCTTACTGCTCCTCGGCCGGCCCAGGCGGCTG TGGTCGGCCGCTTACTGCTCCTCTGCCGGCCCAGGCGGCTG < 41bp 0.801951453474599 0.428455452129126 0.20456636 0.1665675 prediction 0.603902906949198 Functional Loss - HLX ENSG00000136630 CDS Human protein_coding chr1:221053268 chr1:221053271 synonymous SNV . 0 24 hm5C_associated_SNPs_54315 0 0 1 0 0 exosome 0.500231643923333 0.500231643920558 0 5.55022694470608e-12 hm5C_site_49667 DeepMRMD:0;iRNA_m5C:5.55022694470608e-12 49668 chrX 80532666 80532666 1 + G T SARC 80532663 + 80532643 80532683 41 TTTTCAATGAAAGCCAGTATCGCGGGGTAAGAAAACAATTT TTTTCAATGAAAGCCAGTATCGCTGGGTAAGAAAACAATTT < 41bp 0.862014174819161 0.560074990121228 0.94205964 0.15269983 prediction 0.603878369395865 Functional Loss - SH3BGRL ENSG00000131171 CDS Human protein_coding chrX:80532663 chrX:80532666 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_54316 0 0 0 0 1 Ribosome 0.500231643585818 0.500231817058789 0.88411928 0 hm5C_site_49668 DeepMRMD:0.88411928;iRNA_m5C:0 49669 chr19 53994538 53994538 1 + G T LUSC 53994535 + 53994515 53994555 41 ATGCCATCGTAGACTTCATACTGGAGAGAAACCTTTCAAGT ATGCCATCGTAGACTTCATACTGTAGAGAAACCTTTCAAGT < 41bp 0.86069260600683 0.558759308053068 0.08528906 0.025784165 prediction 0.603866595907523 Functional Loss - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53994535 chr19:53994538 nonsynonymous SNV 0.048 3 24 hm5C_associated_SNPs_54317 0 0 1 0 0 nucleolus 0.500231637634456 0.500231635315111 0 4.63868987665705e-09 hm5C_site_49669 DeepMRMD:0;iRNA_m5C:4.63868987665705e-09 49670 chr2 170592657 170592657 1 + G T UCEC 170592655 + 170592635 170592675 41 GTCTATGCTTTAGGTGGTTACAGAAAAGGGGCTCCAGCAGA GTCTATGCTTTAGGTGGTTACATAAAAGGGGCTCCAGCAGA < 41bp 0.801916482282768 0.495632180666051 0.37457064 0.23829085 prediction 0.603832964565536 Functional Loss - KLHL23;PHOSPHO2-KLHL23 ENSG00000213160 CDS Human protein_coding chr2:170592655 chr2:170592657 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_54318 0 0 1 0 1 unknown 0.500231643921088 0.500231643921092 0 0 hm5C_site_49670 DeepMRMD:0;iRNA_m5C:0 49671 chr11 44219549 44219549 1 + G T GBM 44219547 + 44219527 44219567 41 TACTTGTCGTCTGGAATAATCAGAATAAAAACCCTCCAGAA TACTTGTCGTCTGGAATAATCATAATAAAAACCCTCCAGAA < 41bp 0.829659446002203 0.527743412512781 0.9038117 0.20689136 prediction 0.603832066978844 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44219547 chr11:44219549 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54319 0 0 0 0 1 Endoplasmic reticulum 0.50023164514186 0.500231643925972 0.8076234 2.43177677994311e-09 hm5C_site_49671 DeepMRMD:0.8076234;iRNA_m5C:2.43177677994311e-09 49672 chr2 239353036 239353036 1 + G T STAD 239353033 + 239353013 239353053 41 CCTGACTCCTGATGTCCAGCCTCGATTCTCCCGGCGGCTCA CCTGACTCCTGATGTCCAGCCTCTATTCTCCCGGCGGCTCA < 41bp 0.883660335014874 0.58174665781264 0.42060214 0.64097893 prediction 0.603827354404469 Functional Loss - ASB1 ENSG00000065802 CDS Human protein_coding chr2:239353033 chr2:239353036 nonsynonymous SNV 0.713 0 24 hm5C_associated_SNPs_54320 0 0 1 0 1 Ribosome 0.500231676326537 0.500231643920958 0 6.48111584400368e-08 hm5C_site_49672 DeepMRMD:0;iRNA_m5C:6.48111584400368e-08 49673 chr8 17142026 17142026 1 + A T HNSC 17142022 + 17142002 17142042 41 TCAGGCAAGATTGAAAGTAGCTGCACATGAAGCTGAGGAAG TCAGGCAAGATTGAAAGTAGCTGCTCATGAAGCTGAGGAAG < 41bp 0.801903665464439 0.486766053600023 0.34107417 0.13980463 prediction 0.603807330928877 Functional Loss - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17142022 chr8:17142026 synonymous SNV . 0 25 hm5C_associated_SNPs_54321 0 0 1 0 2 chromatin 0.500231642640815 0.500231643920395 0 0 hm5C_site_49673 DeepMRMD:0;iRNA_m5C:0 49674 chr19 17836875 17836875 1 + G T BLCA 17836872 + 17836852 17836892 41 CACCGTCCCCCTTCGAGCTGCTGGAGCCCCCGACCTCCGGG CACCGTCCCCCTTCGAGCTGCTGTAGCCCCCGACCTCCGGG < 41bp 0.881368851311171 0.579465805628527 0.8205496 0.2980835 prediction 0.603806091365288 Functional Loss - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17836872 chr19:17836875 stopgain 0.107 1 24 hm5C_associated_SNPs_54322 0 0 1 0 0 Cytosol 0.500231673366869 0.500231643921092 0.6410992 5.88915527455214e-08 hm5C_site_49674 DeepMRMD:0.6410992;iRNA_m5C:5.88915527455214e-08 49675 chr14 50088860 50088860 1 + G T UCEC 50088857 + 50088837 50088877 41 CTGAATGTGATGTTCTCTCCCTGGGGACCTATAGTGCCAGT CTGAATGTGATGTTCTCTCCCTGTGGACCTATAGTGCCAGT < 41bp 0.868197902560843 0.566298767817034 0.4473777 0.028562874 prediction 0.603798269487618 Functional Loss - MGAT2 ENSG00000168282 CDS Human protein_coding chr14:50088857 chr14:50088860 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_54323 0 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0.500231643941589 0 0 hm5C_site_49675 DeepMRMD:0;iRNA_m5C:0 49676 chr11 55579644 55579644 1 + G T LUSC 55579641 + 55579621 55579661 41 AAGATGGGCTCTGCAGAGGGCAGGCACAAAGCCTTCTCCAC AAGATGGGCTCTGCAGAGGGCAGTCACAAAGCCTTCTCCAC < 41bp 0.80189739954513 0.432128914588448 0.49578056 0.11887929 prediction 0.603794799090259 Functional Loss - OR5L1 ENSG00000186117 CDS Human other chr11:55579641 chr11:55579644 nonsynonymous SNV 0.071 4 24 hm5C_associated_SNPs_54324 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_49676 DeepMRMD:0;iRNA_m5C:0 49677 chr19 37733559 37733559 1 + G T UCEC 37733556 + 37733536 37733576 41 ATCCAAATGGGCATTTTAGTCAAGAAATATTCACTCCTGAA ATCCAAATGGGCATTTTAGTCAATAAATATTCACTCCTGAA < 41bp 0.875579096631994 0.573700983491599 0.63854593 0.0927887 prediction 0.603756226280789 Functional Loss - ZNF383 ENSG00000188283 CDS Human protein_coding chr19:37733556 chr19:37733559 stopgain 0.918 0 24 hm5C_associated_SNPs_54325 0 0 1 0 0 cytosol 0.500231676896156 0.500231643921103 0.27709186 6.59501067090673e-08 hm5C_site_49677 DeepMRMD:0.27709186;iRNA_m5C:6.59501067090673e-08 49678 chr19 50155966 50155966 1 + G T OV 50155963 + 50155943 50155983 41 AGGGGTCTCGTCGGAAGGCGCTGGACGGGGGTGACCGGGAT AGGGGTCTCGTCGGAAGGCGCTGTACGGGGGTGACCGGGAT < 41bp 0.879415260869619 0.577539343307603 0.8762095 0.84860414 prediction 0.603751835124031 Functional Loss - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50155963 chr19:50155966 nonsynonymous SNV 0.975 2 24 hm5C_associated_SNPs_54326 0 0 1 0 0 Cytosol 0.500231644000513 0.500231643921093 0.05521072 1.58840718356146e-10 hm5C_site_49678 DeepMRMD:0.05521072;iRNA_m5C:1.58840718356146e-10 49679 chr6 147830338 147830338 1 + A C rs535026861 147830334 + 147830314 147830354 41 GGGCCGCCCGCCGACGCCGTCCCCACCGGCCGCCGGGGGGA GGGCCGCCCGCCGACGCCGTCCCCCCCGGCCGCCGGGGGGA < 41bp 0.801863611562136 0.443170004414659 0.1507777 0.18489686 prediction 0.603727223124271 Functional Loss - SAMD5 ENSG00000203727 CDS Human protein_coding chr6:147830334 chr6:147830338 nonsynonymous SNV 0.017 0 25 hm5C_associated_SNPs_54327 0 0 1 0 0 Ribosome 0.500227507364572 0.500232121246583 0 0 hm5C_site_49679 DeepMRMD:0;iRNA_m5C:0 49680 chr14 101347433 101347433 1 + G T LUSC 101347430 + 101347410 101347450 41 TCGTCTTGCAGGGCTTCTCGCAAGACGACATCCTCATCACC TCGTCTTGCAGGGCTTCTCGCAATACGACATCCTCATCACC < 41bp 0.801848650527074 0.45301295755675 0.87123555 0.18456754 prediction 0.603697301054147 Functional Loss - RTL1 ENSG00000254656 CDS Human protein_coding chr14:101347430 chr14:101347433 synonymous SNV . 0 24 hm5C_associated_SNPs_54328 0 0 0 0 0 exosome 0.50023164392116 0.500231643921093 0.7424711 1.33670852164869e-13 hm5C_site_49680 DeepMRMD:0.7424711;iRNA_m5C:1.33670852164869e-13 49681 chr19 44536837 44536837 1 + G T HNSC 44536834 + 44536814 44536854 41 GGTCCATCAACGAGTCCACACTGGAGAAAAGCCATACAAAT GGTCCATCAACGAGTCCACACTGTAGAAAAGCCATACAAAT < 41bp 0.80184437062803 0.437268254099818 0.056473047 0.009078562 prediction 0.603688741256061 Functional Loss - ZNF222 ENSG00000159885 CDS Human protein_coding chr19:44536834 chr19:44536837 nonsynonymous SNV 0.075 3 24 hm5C_associated_SNPs_54329 0 0 1 0 0 exosome 0.500231591102671 0.500231643872942 0 0 hm5C_site_49681 DeepMRMD:0;iRNA_m5C:0 49682 chr8 106810992 106810992 1 + G T LUSC 106810990 + 106810970 106811010 41 AGTCCTGTGGCATCTGGTATCGGAGTGAGCGGAATCTGCAG AGTCCTGTGGCATCTGGTATCGTAGTGAGCGGAATCTGCAG < 41bp 0.801827073571008 0.483113613895228 0.92021966 0.8681898 prediction 0.603654147142016 Functional Loss - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106810990 chr8:106810992 synonymous SNV . 0 23 hm5C_associated_SNPs_54330 0 0 1 0 1 chromatin 0.500231643921138 0.500231644070509 0.10405972 0 hm5C_site_49682 DeepMRMD:0.10405972;iRNA_m5C:0 49683 chr9 140034053 140034053 1 + G T COAD 140034050 + 140034030 140034070 41 CGGTGCTGAGCACGCGGAAGCACGAGCAGATGTTCCGCGAG CGGTGCTGAGCACGCGGAAGCACTAGCAGATGTTCCGCGAG < 41bp 0.860163853505131 0.558344049503544 0.8839487 0.56970507 prediction 0.603639608003174 Functional Loss - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140034050 chr9:140034053 stopgain 1.000 0 24 hm5C_associated_SNPs_54331 0 0 0 0 0 exosome 0.500231796009002 0.500231643923717 0.62848726 3.04170570508688e-07 hm5C_site_49683 DeepMRMD:0.62848726;iRNA_m5C:3.04170570508688e-07 49684 chr1 156347929 156347929 1 + G T COAD 156347926 + 156347906 156347946 41 AGTTTGTGCTCCTTCATCTCCTGGGGGTGAGAGTCTGGGGA AGTTTGTGCTCCTTCATCTCCTGTGGGTGAGAGTCTGGGGA < 41bp 0.890466793036914 0.588652844829827 0.8197526 0.06263459 prediction 0.603627896414173 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347926 chr1:156347929 nonsynonymous SNV 0.297 3 24 hm5C_associated_SNPs_54332 0 0 1 0 1 Cytosol 0.500231643919266 0.500231630936712 0.6395052 2.59651091738533e-08 hm5C_site_49684 DeepMRMD:0.6395052;iRNA_m5C:2.59651091738533e-08 49685 chr17 48246632 48246632 1 + G T UCEC 48246629 + 48246609 48246649 41 GACCCTGGTGAGGAGGGACCCTGGGTCCGGGGGTGGGGTGG GACCCTGGTGAGGAGGGACCCTGTGTCCGGGGGTGGGGTGG < 41bp 0.886679444938814 0.584870997475121 0.88437426 0.23022923 prediction 0.603616894927387 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48246629 chr17:48246632 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_54333 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921094 0.76874852 0 hm5C_site_49685 DeepMRMD:0.76874852;iRNA_m5C:0 49686 chr2 178981028 178981028 1 + G T UCEC 178981025 + 178981005 178981045 41 CCCGATCATCTGGAAGTCACCGAGATGTTGAAGATGAAGAA CCCGATCATCTGGAAGTCACCGATATGTTGAAGATGAAGAA < 41bp 0.866998693779457 0.565195299157586 0.25202 0.03659281 prediction 0.603606789243742 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178981025 chr2:178981028 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_54334 0 0 0 0 2 Nucleus 0.500231644550555 0.50023165317653 0 0 hm5C_site_49686 DeepMRMD:0;iRNA_m5C:0 49687 chr11 65688402 65688402 1 + A T STAD 65688398 + 65688378 65688418 41 TGATGGGGAAGAGGAGACATCACAACCCCCACCCCAGGCCA TGATGGGGAAGAGGAGACATCACATCCCCCACCCCAGGCCA < 41bp 0.816021036228444 0.514220384929249 0.09173074 0.047778994 prediction 0.60360130259839 Functional Loss - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65688398 chr11:65688402 nonsynonymous SNV 0.077 1 25 hm5C_associated_SNPs_54335 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921137 0 0 hm5C_site_49687 DeepMRMD:0;iRNA_m5C:0 49688 chr6 170179373 170179373 1 + A C COAD 170179369 + 170179349 170179389 41 CTGTTTGTGGGAAGAATGCGCATGAGTATCAGCAGTACCTA CTGTTTGTGGGAAGAATGCGCATGCGTATCAGCAGTACCTA < 41bp 0.801781909693303 0.431895810588399 0.13934109 0.24166599 prediction 0.603563819386606 Functional Loss - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170179369 chr6:170179373 nonsynonymous SNV 0.084 3 25 hm5C_associated_SNPs_54336 0 0 1 0 2 chromatin 0.500231617256471 0.500231785711328 0 0 hm5C_site_49688 DeepMRMD:0;iRNA_m5C:0 49689 chr11 4471501 4471501 1 + G T UCEC 4471498 + 4471478 4471518 41 GAGCATCTTGGGAGTATTCCCAAGAAAGGATATGTAGAGGG GAGCATCTTGGGAGTATTCCCAATAAAGGATATGTAGAGGG < 41bp 0.861093556225056 0.559311678842607 0.856731 0.19414088 prediction 0.603563754764898 Functional Loss - OR52K2 ENSG00000181963 CDS Human protein_coding chr11:4471498 chr11:4471501 nonsynonymous SNV 0.019 0 24 hm5C_associated_SNPs_54337 0 0 0 0 0 exosome 0.500231643920963 0.500231643921098 0.713462 0 hm5C_site_49689 DeepMRMD:0.713462;iRNA_m5C:0 49690 chr11 55798346 55798346 1 + G T LUAD 55798344 + 55798324 55798364 41 TTCATTGTGTTGGCATATTTCAGTGGAAGTACAACATCACT TTCATTGTGTTGGCATATTTCATTGGAAGTACAACATCACT < 41bp 0.801781551975424 0.492915302570726 0.4114289 0.09239191 prediction 0.603563103950848 Functional Loss - OR5AS1 ENSG00000181785 CDS Human protein_coding chr11:55798344 chr11:55798346 nonsynonymous SNV 0.192 0 23 hm5C_associated_SNPs_54338 0 0 0 0 0 unknown 0.500231644969127 0.500207723126131 0 4.78436859925324e-05 hm5C_site_49690 DeepMRMD:0;iRNA_m5C:4.78436859925324e-05 49691 chr17 4996049 4996049 1 + G T HNSC 4996046 + 4996026 4996066 41 TGTCCACCAGAGAATTCATACTGGAGAGAAACCCCATCAAT TGTCCACCAGAGAATTCATACTGTAGAGAAACCCCATCAAT < 41bp 0.878128324642476 0.576354454879242 0.18061653 0.06370458 prediction 0.603547739526467 Functional Loss - ZFP3 ENSG00000180787 CDS Human protein_coding chr17:4996046 chr17:4996049 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_54339 0 0 0 0 0 exosome 0.500231641171793 0.500231643883085 0 0 hm5C_site_49691 DeepMRMD:0;iRNA_m5C:0 49692 chr5 140594856 140594856 1 + G T LUAD 140594854 + 140594834 140594874 41 GGAAAATTAGTTGCTCCATTCAGGAGGATCTACCCTTCCTC GGAAAATTAGTTGCTCCATTCATGAGGATCTACCCTTCCTC < 41bp 0.815094605232242 0.51332429450081 0.9243182 0.33509287 prediction 0.603540621462864 Functional Loss - PCDHB13 ENSG00000187372 CDS Human protein_coding chr5:140594854 chr5:140594856 nonsynonymous SNV 0.010 1 23 hm5C_associated_SNPs_54340 0 0 0 0 0 exosome 0.500231643921092 0.500231643923255 0.8486364 0 hm5C_site_49692 DeepMRMD:0.8486364;iRNA_m5C:0 49693 chr1 176760523 176760523 1 + A C SKCM 176760519 + 176760499 176760539 41 CTAAAGAGGGCCTGTGGACCCAGGAGTTTAAGTTGTGTGAG CTAAAGAGGGCCTGTGGACCCAGGCGTTTAAGTTGTGTGAG < 41bp 0.872338281089642 0.570569700034674 0.9152122 0.8619057 prediction 0.603537162109935 Functional Loss - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176760519 chr1:176760523 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_54341 0 0 0 1 2 Cytosol 0.500231643839588 0.50023164393436 0.106613 0 hm5C_site_49693 DeepMRMD:0.106613;iRNA_m5C:0 49694 chr1 34663068 34663068 1 + A C STAD 34663064 + 34663044 34663084 41 TCGGAGACAAGCTTCTGAAGCAGAAGGTGGCCATGCCCGTT TCGGAGACAAGCTTCTGAAGCAGACGGTGGCCATGCCCGTT < 41bp 0.801766422856338 0.406500037849416 0.41723913 0.24337372 prediction 0.603532845712677 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34663064 chr1:34663068 nonsynonymous SNV 0.813 2 25 hm5C_associated_SNPs_54342 0 0 0 0 0 unknown 0.500231644006205 0.500231654252917 0 0 hm5C_site_49694 DeepMRMD:0;iRNA_m5C:0 49695 chrX 70389395 70389395 1 + G T UCEC 70389392 + 70389372 70389412 41 ATCACCCGCAGGCCCAATGGCAAGACCTGGAGCACCAAGCG ATCACCCGCAGGCCCAATGGCAATACCTGGAGCACCAAGCG < 41bp 0.801762713076155 0.419554914916882 0.19926256 0.13238394 prediction 0.603525426152311 Functional Loss - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70389392 chrX:70389395 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54343 0 0 0 0 0 exosome 0.500231643921056 0.500231643921092 0 0 hm5C_site_49695 DeepMRMD:0;iRNA_m5C:0 49696 chr1 118477298 118477298 1 + G T LUAD 118477295 + 118477275 118477315 41 GCTAGGAGGCAGACTGGCATCTGGGTCCAAGGTGAGCCTTT GCTAGGAGGCAGACTGGCATCTGTGTCCAAGGTGAGCCTTT < 41bp 0.869709767196743 0.567948586505338 0.38431942 0.09115031 prediction 0.603522361382809 Functional Loss - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118477295 chr1:118477298 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54344 0 0 1 0 1 Nucleus 0.500231643919724 0.500231647441006 0 0 hm5C_site_49696 DeepMRMD:0;iRNA_m5C:0 49697 chr17 8215490 8215490 1 + G T UCEC 8215487 + 8215467 8215507 41 CCCACAATGGCTCCTCTCCACAAGAACTACCCCGAAACTCC CCCACAATGGCTCCTCTCCACAATAACTACCCCGAAACTCC < 41bp 0.801759401160646 0.408139214754784 0.07497063 0.047793 prediction 0.603518802321292 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8215487 chr17:8215490 stopgain 0.861 0 24 hm5C_associated_SNPs_54345 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_49697 DeepMRMD:0;iRNA_m5C:0 49698 chr10 3158984 3158984 1 + G T LUAD 3158982 + 3158962 3159002 41 CATTAGATCAAAGAAATCGGCTGGACAGATGTCGGGGGCTG CATTAGATCAAAGAAATCGGCTTGACAGATGTCGGGGGCTG < 41bp 0.801736572816585 0.485013509002175 0.22977251 0.15411618 prediction 0.603473145633169 Functional Loss - PFKP ENSG00000067057 CDS Human protein_coding chr10:3158982 chr10:3158984 nonsynonymous SNV 0.971 4 23 hm5C_associated_SNPs_54346 0 0 1 0 2 Nucleus 0.500451154899677 0.500259196994601 0 0.000383915810152846 hm5C_site_49698 DeepMRMD:0;iRNA_m5C:0.000383915810152846 49699 chr11 5776054 5776054 1 + G T LUSC 5776051 + 5776031 5776071 41 GGACTGGAAGACACACAACTCTGGATTTCCTTCCCATTCTG GGACTGGAAGACACACAACTCTGTATTTCCTTCCCATTCTG < 41bp 0.862685760153707 0.560955788815806 0.53881997 0.20892248 prediction 0.6034599426758 Functional Loss - OR52N4 ENSG00000181074 CDS Human protein_coding chr11:5776051 chr11:5776054 nonsynonymous SNV 0.968 2 24 hm5C_associated_SNPs_54347 0 0 0 0 0 exosome 0.500231646278333 0.500235157710818 0.0776399400000001 0 hm5C_site_49699 DeepMRMD:0.0776399400000001;iRNA_m5C:0 49700 chr5 33937474 33937474 1 + G T HNSC 33937472 + 33937452 33937492 41 GGCCGGAGCCTGGGGGACAGCTGCTGCTTCTCGGCCAAGGC GGCCGGAGCCTGGGGGACAGCTTCTGCTTCTCGGCCAAGGC < 41bp 0.838586487485328 0.536873659497434 0.28266367 0.22144139 prediction 0.603425655975788 Functional Loss - RXFP3 ENSG00000182631 CDS Human protein_coding chr5:33937472 chr5:33937474 nonsynonymous SNV 0.691 1 23 hm5C_associated_SNPs_54348 0 0 0 0 0 unknown 0.500231643921107 0.500231643921094 0 2.53130849614536e-14 hm5C_site_49700 DeepMRMD:0;iRNA_m5C:2.53130849614536e-14 49701 chr1 57378115 57378115 1 + G T UCEC 57378112 + 57378092 57378132 41 AGGTGCTGCGGCACACAAGCCTGGGGCCTCTGGAGGCCAAG AGGTGCTGCGGCACACAAGCCTGTGGCCTCTGGAGGCCAAG < 41bp 0.889401968426067 0.587695356665882 0.74506253 0.2525079 prediction 0.60341322352037 Functional Loss - C8A ENSG00000157131 CDS Human protein_coding chr1:57378112 chr1:57378115 nonsynonymous SNV 0.248 4 24 hm5C_associated_SNPs_54349 0 0 1 0 1 cytosol 0.493691938308205 0.500231773303861 0.49012506 0 hm5C_site_49701 DeepMRMD:0.49012506;iRNA_m5C:0 49702 chr1 212274119 212274119 1 + A C COAD 212274115 + 212274095 212274135 41 TGTGCTGCCTTGCTGGTAACCAGGAAGACCTTAGTAAGGAC TGTGCTGCCTTGCTGGTAACCAGGCAGACCTTAGTAAGGAC < 41bp 0.801686394249575 0.413434730790281 0.8093327 0.86352813 prediction 0.603372788499149 Functional Loss - DTL ENSG00000143476 CDS Human protein_coding chr1:212274115 chr1:212274119 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_54350 0 0 1 0 0 Cytosol 0.500231631577752 0.500231566599811 0 1.29955882721688e-07 hm5C_site_49702 DeepMRMD:0;iRNA_m5C:1.29955882721688e-07 49703 chr8 27311760 27311760 1 + G T UCEC 27311757 + 27311737 27311777 41 GTGCGGGCCGTGCTGGAGCTCAAGAATGAGCTCTGTCAGCT GTGCGGGCCGTGCTGGAGCTCAATAATGAGCTCTGTCAGCT < 41bp 0.801678233457437 0.435979531108525 0.7825671 0.15094095 prediction 0.603356466914875 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27311757 chr8:27311760 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_54351 0 0 1 0 2 chromatin 0.500231643920556 0.500231643921092 0.5651342 0 hm5C_site_49703 DeepMRMD:0.5651342;iRNA_m5C:0 49704 chr5 140515818 140515818 1 + G T UCEC 140515815 + 140515795 140515835 41 TAGTTGTCGTTGTCTCCGCTCGAGATTTAGATGCAGGAGCA TAGTTGTCGTTGTCTCCGCTCGATATTTAGATGCAGGAGCA < 41bp 0.801676570420267 0.428758600075282 0.8894473 0.2762471 prediction 0.603353140840533 Functional Loss - PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140515815 chr5:140515818 nonsynonymous SNV 0.313 3 24 hm5C_associated_SNPs_54352 0 0 0 0 0 Endoplasmic reticulum 0.500231643606152 0.500231620478689 0.7788946 4.6254926777678e-08 hm5C_site_49704 DeepMRMD:0.7788946;iRNA_m5C:4.6254926777678e-08 49705 chr1 226252135 226252135 1 + A T GBM 226252131 + 226252111 226252151 41 AACTGGCTACAAAAGCCGCTCGCAAGAGTGCGCCCTCTACT AACTGGCTACAAAAGCCGCTCGCATGAGTGCGCCCTCTACT < 41bp 0.813040737944063 0.511376031552865 0.68887746 0.60876834 prediction 0.603329412782396 Functional Loss - H3F3A ENSG00000163041 CDS Human protein_coding chr1:226252131 chr1:226252135 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_54353 2 0 0 0 1 Cytosol 0.500231622037745 0.500231644080278 0.16021824 0 hm5C_site_49705 DeepMRMD:0.16021824;iRNA_m5C:0 Brainstem glioma Brainstem glioma 49706 chr1 43779603 43779603 1 + G T PRAD 43779601 + 43779581 43779621 41 TGTGCATCCGCAGAAGCTGCCTGCATCGGAGACGCACCTTC TGTGCATCCGCAGAAGCTGCCTTCATCGGAGACGCACCTTC < 41bp 0.813845407307 0.512184330819463 0.003492564 0.0061903 prediction 0.603322152975073 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43779601 chr1:43779603 synonymous SNV . 0 23 hm5C_associated_SNPs_54354 0 0 0 0 1 Cytosol 0.500231643868132 0.50023164394399 0 0 hm5C_site_49706 DeepMRMD:0;iRNA_m5C:0 49707 chr22 50617536 50617536 1 + A T LUSC 50617532 + 50617512 50617552 41 CTCACCATCCTGAGCCGAAACGCCACACACCCGCTGCTGCA CTCACCATCCTGAGCCGAAACGCCTCACACCCGCTGCTGCA < 41bp 0.820399989910835 0.518740255490893 0.7207787 0.21004874 prediction 0.603319468839884 Functional Loss - PANX2 ENSG00000073150 CDS Human protein_coding chr22:50617532 chr22:50617536 nonsynonymous SNV 0.968 0 25 hm5C_associated_SNPs_54355 0 0 0 0 1 Endoplasmic reticulum 0.500231643878691 0.500231643918604 0.4415574 0 hm5C_site_49707 DeepMRMD:0.4415574;iRNA_m5C:0 49708 chr11 65770766 65770766 1 + G T LUAD 65770763 + 65770743 65770783 41 CGAGACTTCGTGGCAGAGCCCATGGGGGAGAAGCCAGTGGG CGAGACTTCGTGGCAGAGCCCATTGGGGAGAAGCCAGTGGG < 41bp 0.801657289581165 0.417261728918502 0.8210434 0.31370914 prediction 0.60331457916233 Functional Loss - BANF1 ENSG00000175334 CDS Human protein_coding chr11:65770763 chr11:65770766 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_54356 0 0 1 0 2 Ribosome 0.50023164392109 0.500231643861724 0.6420868 1.18732801368537e-10 hm5C_site_49708 DeepMRMD:0.6420868;iRNA_m5C:1.18732801368537e-10 49709 chr11 55419252 55419252 1 + A C COAD 55419248 + 55419228 55419268 41 GATTTATACACTGAGAAATGCAGAAGTAAAGAATGCAATGA GATTTATACACTGAGAAATGCAGACGTAAAGAATGCAATGA < 41bp 0.801654323372878 0.456854557628433 0.30576515 0.31544536 prediction 0.603308646745756 Functional Loss - OR4S2 ENSG00000174982 CDS Human protein_coding chr11:55419248 chr11:55419252 nonsynonymous SNV 0.903 0 25 hm5C_associated_SNPs_54357 0 0 0 0 0 unknown 0.500230014591568 0.500231640776567 0 0 hm5C_site_49709 DeepMRMD:0;iRNA_m5C:0 49710 chr3 44828003 44828003 1 + G T UCEC 44828000 + 44827980 44828020 41 CTGTACTTAAGGGAGCATATCAAGAAGGGAGTCTTTGTTGT CTGTACTTAAGGGAGCATATCAATAAGGGAGTCTTTGTTGT < 41bp 0.874369290152864 0.572717973619702 0.79079473 0.23674434 prediction 0.603302633066323 Functional Loss - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44828000 chr3:44828003 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_54358 0 0 1 0 1 Ribosome 0.500231641638005 0.500231643921092 0.58158946 0 hm5C_site_49710 DeepMRMD:0.58158946;iRNA_m5C:0 49711 chr16 2514177 2514177 1 + G T SARC 2514174 + 2514154 2514194 41 GCACCCAGGAGCTGCAGACCCTGGCGGCCCTCAAGCTGCGA GCACCCAGGAGCTGCAGACCCTGTCGGCCCTCAAGCTGCGA < 41bp 0.801649725782082 0.422264696571599 0.3553557 0.09261578 prediction 0.603299451564164 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514174 chr16:2514177 nonsynonymous SNV 0.713 0 24 hm5C_associated_SNPs_54359 0 0 0 0 2 Ribosome 0.500231670036808 0.500231643927343 0 5.22189296248143e-08 hm5C_site_49711 DeepMRMD:0;iRNA_m5C:5.22189296248143e-08 49712 chr11 1467071 1467071 1 + G T UCEC 1467069 + 1467049 1467089 41 CGCAAATCCATGGAGGTGCTCAGCGTGACGGACGGCGGCTC CGCAAATCCATGGAGGTGCTCATCGTGACGGACGGCGGCTC < 41bp 0.801644601475788 0.475474260140943 0.8671453 0.37372684 prediction 0.603289202951576 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1467069 chr11:1467071 nonsynonymous SNV 0.977 2 23 hm5C_associated_SNPs_54360 0 0 0 0 2 exosome 0.500243281129738 0.500146202841089 0.7342906 0.000194156577298044 hm5C_site_49712 DeepMRMD:0.7342906;iRNA_m5C:0.000194156577298044 49713 chr9 132636908 132636908 1 + G T UCEC 132636905 + 132636885 132636925 41 CACGAGGTGATGTACTCATTCAAGATCAACAGCCACGTCTC CACGAGGTGATGTACTCATTCAATATCAACAGCCACGTCTC < 41bp 0.888398945075168 0.586762749251653 0.57275677 0.10559857 prediction 0.60327239164703 Functional Loss - USP20 ENSG00000136878 CDS Human protein_coding chr9:132636905 chr9:132636908 nonsynonymous SNV 0.979 2 24 hm5C_associated_SNPs_54361 0 0 0 0 1 chromatin 0.500231659949359 0.500231844473844 0.14551354 0 hm5C_site_49713 DeepMRMD:0.14551354;iRNA_m5C:0 49714 chr17 20000111 20000111 1 + G T LIHC 20000108 + 20000088 20000128 41 GCTTTTGAGTCCCGACTCAGCAGGGTATGGATCAAAATGCA GCTTTTGAGTCCCGACTCAGCAGTGTATGGATCAAAATGCA < 41bp 0.801635030672677 0.438465561792345 0.80257314 0.07101223 prediction 0.603270061345355 Functional Loss - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:20000108 chr17:20000111 nonsynonymous SNV 0.970 2 24 hm5C_associated_SNPs_54362 0 0 0 0 1 Cytosol 0.500231727980254 0.500231643917103 0.60514628 1.68126302879656e-07 hm5C_site_49714 DeepMRMD:0.60514628;iRNA_m5C:1.68126302879656e-07 49715 chr19 58189423 58189423 1 + G T UCEC 58189420 + 58189400 58189440 41 GGACACCCTCCCAGACTTCCCAAGATACTTCCTTAGAAACA GGACACCCTCCCAGACTTCCCAATATACTTCCTTAGAAACA < 41bp 0.801629153355651 0.44282343173748 0.8668243 0.1429714 prediction 0.603258306711301 Functional Loss - ZSCAN4 ENSG00000180532 CDS Human protein_coding chr19:58189420 chr19:58189423 nonsynonymous SNV 0.023 2 24 hm5C_associated_SNPs_54363 0 0 0 0 1 exosome 0.500231643921092 0.500231643921091 0.7336486 2.88657986402541e-15 hm5C_site_49715 DeepMRMD:0.7336486;iRNA_m5C:2.88657986402541e-15 49716 chr12 105558084 105558084 1 + A T LUSC 105558080 + 105558060 105558100 41 AGAAGCGACTGGATGTCTATCTACAGGTAGAGAGGAGCCTA AGAAGCGACTGGATGTCTATCTACTGGTAGAGAGGAGCCTA < 41bp 0.801628885041888 0.490061593007895 0.26529053 0.14331272 prediction 0.603257770083776 Functional Loss - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105558080 chr12:105558084 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_54364 0 0 1 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_49716 DeepMRMD:0;iRNA_m5C:0 49717 chr5 140772411 140772411 1 + G T UCEC 140772408 + 140772388 140772428 41 CTCCACAGAGTCGCCCCAGACGCGGCGAGCTGATCCTGCTG CTCCACAGAGTCGCCCCAGACGCTGCGAGCTGATCCTGCTG < 41bp 0.801617642410809 0.43086152765566 0.83412373 0.33026433 prediction 0.603235284821618 Functional Loss - PCDHGA8 ENSG00000253767 CDS Human protein_coding chr5:140772408 chr5:140772411 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_54365 0 0 0 0 0 exosome 0.500231643921092 0.50023158498978 0.66824746 1.17862624104959e-07 hm5C_site_49717 DeepMRMD:0.66824746;iRNA_m5C:1.17862624104959e-07 49718 chr1 159175442 159175442 1 + G T LUAD 159175440 + 159175420 159175460 41 TCTTCATCCTCACCAGTGTCCTGGGTATCCTAGCTAGCAGC TCTTCATCCTCACCAGTGTCCTTGGTATCCTAGCTAGCAGC < 41bp 0.801615886203594 0.468802796496619 0.59519804 0.111469954 prediction 0.603231772407188 Functional Loss - ACKR1 ENSG00000213088 CDS Human protein_coding chr1:159175440 chr1:159175442 synonymous SNV . 0 23 hm5C_associated_SNPs_54366 0 0 0 0 0 Endoplasmic reticulum 0.500231643931026 0.500231643921093 0.19039608 1.98667748918524e-11 hm5C_site_49718 DeepMRMD:0.19039608;iRNA_m5C:1.98667748918524e-11 49719 chr19 30936318 30936318 1 + G T OV 30936315 + 30936295 30936335 41 CACACGGGCTGAACCAGACTCTCGAGTATAACCTGCAGGGT CACACGGGCTGAACCAGACTCTCTAGTATAACCTGCAGGGT < 41bp 0.801605866423097 0.43590009319033 0.3553089 0.8592285 prediction 0.603211732846194 Functional Loss - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936315 chr19:30936318 stopgain 0.530 0 24 hm5C_associated_SNPs_54367 0 0 1 0 0 exosome 0.500231643394733 0.500151656631336 0 0.00015997352679431 hm5C_site_49719 DeepMRMD:0;iRNA_m5C:0.00015997352679431 49720 chr16 1825398 1825398 1 + G T KIRC 1825395 + 1825375 1825415 41 CCGAGGTGGCCGTCAGCTGGCCGGAGGTGGAAGAGGTGAGG CCGAGGTGGCCGTCAGCTGGCCGTAGGTGGAAGAGGTGAGG < 41bp 0.801598972461928 0.437123953292242 0.8250717 0.5064626 prediction 0.603197944923856 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825395 chr16:1825398 stopgain 0.122 0 24 hm5C_associated_SNPs_54368 0 0 1 0 3 chromatin 0.500231643966916 0.50023164452514 0.6372182 0 hm5C_site_49720 DeepMRMD:0.6372182;iRNA_m5C:0 49721 chr12 124093304 124093304 1 + G T SARC 124093302 + 124093282 124093322 41 GCCGAAGGCTTGGATCTGGCCAGCTGTGTGCGATCCCTGGA GCCGAAGGCTTGGATCTGGCCATCTGTGTGCGATCCCTGGA < 41bp 0.801596808504903 0.489479221051171 0.8235739 0.42996728 prediction 0.603193617009806 Functional Loss - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124093302 chr12:124093304 nonsynonymous SNV 0.881 1 23 hm5C_associated_SNPs_54369 0 0 1 0 2 Nucleus 0.500231646084288 0.500231829405248 0.6471478 0 hm5C_site_49721 DeepMRMD:0.6471478;iRNA_m5C:0 49722 chr1 196928092 196928092 1 + G T BLCA 196928089 + 196928069 196928109 41 AAACCAACAAAAGCTTTATTCAAGAACAGGTGACATAGTTG AAACCAACAAAAGCTTTATTCAATAACAGGTGACATAGTTG < 41bp 0.801596379248485 0.463128676127742 0.14964059 0.057580084 prediction 0.603192758496971 Functional Loss - CFHR2 ENSG00000080910 CDS Human protein_coding chr1:196928089 chr1:196928092 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_54370 0 0 0 0 1 exosome 0.500232111670517 0.500245167478191 0 0 hm5C_site_49722 DeepMRMD:0;iRNA_m5C:0 49723 chr20 45355581 45355581 1 + G T LUAD 45355579 + 45355559 45355599 41 GCCTTCTGCAACAGCTTCAACTGGGCGGCCAACCTCTTCAT GCCTTCTGCAACAGCTTCAACTTGGCGGCCAACCTCTTCAT < 41bp 0.83861448382363 0.53702879284158 0.8775024 0.17901474 prediction 0.6031713819641 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355579 chr20:45355581 nonsynonymous SNV 0.968 4 23 hm5C_associated_SNPs_54371 0 0 0 0 2 Nucleus 0.500231643918252 0.500231643920953 0.7550048 0 hm5C_site_49723 DeepMRMD:0.7550048;iRNA_m5C:0 49724 chrX 152686648 152686648 1 + G T UCEC 152686645 + 152686625 152686665 41 TACGCGTGCCCAGAGTGCGGCAAGGCCTTCAGCCGCAGCTC TACGCGTGCCCAGAGTGCGGCAATGCCTTCAGCCGCAGCTC < 41bp 0.801585476599652 0.417346791280994 0.8362825 0.5644587 prediction 0.603170953199305 Functional Loss - ZFP92 ENSG00000189420 CDS Human protein_coding chrX:152686645 chrX:152686648 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_54372 0 0 0 0 0 nucleolus 0.500231643921092 0.500231643921092 0.5436476 0 hm5C_site_49724 DeepMRMD:0.5436476;iRNA_m5C:0 49725 chr22 24829476 24829476 1 + G T ESCA 24829474 + 24829454 24829494 41 TGCTGGGCCGTGTGGCTCAACAGCAACCTGCAGAACGTCAC TGCTGGGCCGTGTGGCTCAACATCAACCTGCAGAACGTCAC < 41bp 0.801582462967019 0.48060426505331 0.0247702 0.005541116 prediction 0.603164925934037 Functional Loss - ADORA2A ENSG00000128271 CDS Human protein_coding chr22:24829474 chr22:24829476 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_54373 0 0 0 0 0 Endoplasmic reticulum 0.500231644017222 0.50023162792499 0 3.21844639827873e-08 hm5C_site_49725 DeepMRMD:0;iRNA_m5C:3.21844639827873e-08 49726 chr14 74824821 74824821 1 + G T LUSC 74824819 + 74824799 74824839 41 ATTGGCGGCGAAAGGCCCTCCGGAGGAACCCCAGCTTCAAG ATTGGCGGCGAAAGGCCCTCCGTAGGAACCCCAGCTTCAAG < 41bp 0.801578588509568 0.464245277091128 0.8495846 0.24601161 prediction 0.603157177019136 Functional Loss - VRTN ENSG00000133980 CDS Human protein_coding chr14:74824819 chr14:74824821 synonymous SNV . 0 23 hm5C_associated_SNPs_54374 0 0 0 0 0 unknown 0.500231643921093 0.500231645999043 0.6991692 0 hm5C_site_49726 DeepMRMD:0.6991692;iRNA_m5C:0 49727 chr11 7441832 7441832 1 + G T LUAD 7441829 + 7441809 7441849 41 GAGTGAAATGTTGTCATATCCTCGGAAGCCCATTGCACACT GAGTGAAATGTTGTCATATCCTCTGAAGCCCATTGCACACT < 41bp 0.801578519333635 0.444273180136481 0.2628311 0.18348786 prediction 0.603157038667271 Functional Loss - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7441829 chr11:7441832 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54375 0 0 1 2 1 exosome 0.50023164396232 0.500231337752002 0 6.12420635537347e-07 hm5C_site_49727 DeepMRMD:0;iRNA_m5C:6.12420635537347e-07 49728 chr9 140137568 140137568 1 + A T UCEC 140137564 + 140137544 140137584 41 CAGATGTTTGATGCCAAGAACATGATGGCTGCCTGCGACCC CAGATGTTTGATGCCAAGAACATGTTGGCTGCCTGCGACCC < 41bp 0.8015676870859 0.495127517421531 0.28198075 0.31448025 prediction 0.6031353741718 Functional Loss - TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140137564 chr9:140137568 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_54376 0 0 1 0 0 Cytosol 0.499844482045188 0.50001213984852 0 0 hm5C_site_49728 DeepMRMD:0;iRNA_m5C:0 49729 chr20 240658 240658 1 + A C rs377589716 240654 + 240634 240674 41 TAAGGAGGGAGAGAAAGGAGCTGAAAGTCTAGGTTTGGCCA TAAGGAGGGAGAGAAAGGAGCTGACAGTCTAGGTTTGGCCA < 41bp 0.852411937852304 0.550855916526386 0.6824587 0.19393924 prediction 0.603112042651835 Functional Loss - DEFB132 ENSG00000186458 UTR3 Human protein_coding chr20:240654 chr20:240658 . . 0 25 hm5C_associated_SNPs_54377 0 0 0 0 0 unknown 0.500231643921092 0.5002316439228 0.3649174 0 hm5C_site_49729 DeepMRMD:0.3649174;iRNA_m5C:0 49730 chr4 71459091 71459091 1 + G T LUAD 71459089 + 71459069 71459109 41 TGATACTGATCCTATGCCTCCTGGAAATGAGTTTTGCAGTG TGATACTGATCCTATGCCTCCTTGAAATGAGTTTTGCAGTG < 41bp 0.807911255852061 0.506356570800724 0.20100483 0.28603512 prediction 0.603109370102675 Functional Loss - AMBN ENSG00000178522 CDS Human protein_coding chr4:71459089 chr4:71459091 synonymous SNV . 0 23 hm5C_associated_SNPs_54378 0 0 0 0 2 exosome 0.500231643908174 0.500231643921095 0 0 hm5C_site_49730 DeepMRMD:0;iRNA_m5C:0 49731 chr1 18152471 18152471 1 + G T STAD 18152468 + 18152448 18152488 41 GATCTCTCCGCCTATCTCCTCAAGAGTCTCTTTAAGGAAGA GATCTCTCCGCCTATCTCCTCAATAGTCTCTTTAAGGAAGA < 41bp 0.801550980781864 0.4297911740684 0.4506945 0.16830802 prediction 0.603101961563729 Functional Loss - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18152468 chr1:18152471 nonsynonymous SNV 0.036 1 24 hm5C_associated_SNPs_54379 0 0 0 0 0 unknown 0.500231625857975 0.500231643921092 0 0 hm5C_site_49731 DeepMRMD:0;iRNA_m5C:0 49732 chr1 171761238 171761238 1 + G T LAML 171761236 + 171761216 171761256 41 CACGATCATTTTCCAAAGTCCTGCATTGATGCTGTGGAGAT CACGATCATTTTCCAAAGTCCTTCATTGATGCTGTGGAGAT < 41bp 0.801543732848167 0.496583159408523 0.3909906 0.29407817 prediction 0.603087465696334 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171761236 chr1:171761238 nonsynonymous SNV 0.895 0 23 hm5C_associated_SNPs_54380 0 0 0 0 1 Ribosome 0.500231643623535 0.500231643915181 0 0 hm5C_site_49732 DeepMRMD:0;iRNA_m5C:0 49733 chr16 71885621 71885621 1 + G T UCEC 71885618 + 71885598 71885638 41 GCTTCCAAAGATACAGCATGCAAGGGGAGGAGGCACGGGCT GCTTCCAAAGATACAGCATGCAATGGGAGGAGGCACGGGCT < 41bp 0.801540088809169 0.439375897300175 0.41523936 0.13718334 prediction 0.603080177618337 Functional Loss - ATXN1L ENSG00000224470 CDS Human protein_coding chr16:71885618 chr16:71885621 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_54381 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_49733 DeepMRMD:0;iRNA_m5C:0 49734 chr1 240071406 240071406 1 + G T LUAD 240071404 + 240071384 240071424 41 TGGAAAGAGAACTGTGCCTCCGGGAGAGTGCTTCATTCAGT TGGAAAGAGAACTGTGCCTCCGTGAGAGTGCTTCATTCAGT < 41bp 0.818163920761502 0.516633629525374 0.85554713 0.3799003 prediction 0.603060582472257 Functional Loss - CHRM3 ENSG00000133019 CDS Human protein_coding chr1:240071404 chr1:240071406 stopgain 0.799 0 23 hm5C_associated_SNPs_54382 0 0 0 0 0 exosome 0.500226971813487 0.500231646059801 0.71109426 0 hm5C_site_49734 DeepMRMD:0.71109426;iRNA_m5C:0 49735 chr1 20669053 20669053 1 + G T rs34038424 20669050 + 20669030 20669070 41 TGGGGCCAGGAGACCCAGGCCTGGAGCCCTGTGAGAGAGCG TGGGGCCAGGAGACCCAGGCCTGTAGCCCTGTGAGAGAGCG < 41bp 0.801523433603129 0.432499296930345 0.36035633 0.21822721 prediction 0.603046867206257 Functional Loss - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20669050 chr1:20669053 nonsynonymous SNV 0.026 1 24 hm5C_associated_SNPs_54383 0 0 0 0 1 exosome 0.500231643920193 0.500231643921092 0 0 hm5C_site_49735 DeepMRMD:0;iRNA_m5C:0 49736 chr1 29638208 29638208 1 + G T COAD 29638205 + 29638185 29638225 41 TCAGACACCTACGGGGACATCAAGATTATGCTGGTGAAGAC TCAGACACCTACGGGGACATCAATATTATGCTGGTGAAGAC < 41bp 0.877108296133196 0.575587807418744 0.31394145 0.29882404 prediction 0.603040977428904 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29638205 chr1:29638208 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_54384 0 0 1 0 2 Endoplasmic reticulum 0.500232812223536 0.500231643922865 0 2.33660134218994e-06 hm5C_site_49736 DeepMRMD:0;iRNA_m5C:2.33660134218994e-06 49737 chr12 81111244 81111244 1 + G T LUSC 81111242 + 81111222 81111262 41 CCATCCGCTACATCGAGAGCCTGCAGGAGTTGCTGAGAGAG CCATCCGCTACATCGAGAGCCTTCAGGAGTTGCTGAGAGAG < 41bp 0.817849142600997 0.516335614647528 0.47498006 0.36295623 prediction 0.603027055906939 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81111242 chr12:81111244 synonymous SNV . 0 23 hm5C_associated_SNPs_54385 0 0 0 0 1 unknown 0.500231643921175 0.500231643921547 0 0 hm5C_site_49737 DeepMRMD:0;iRNA_m5C:0 49738 chr19 16319905 16319905 1 + A T COAD 16319901 + 16319881 16319921 41 CCGCGGCCACCAGCCACCGTCACCAACGCGGTGTCCTGGCG CCGCGGCCACCAGCCACCGTCACCTACGCGGTGTCCTGGCG < 41bp 0.801511036294822 0.469506904027661 0.7755934 0.85736954 prediction 0.603022072589643 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16319901 chr19:16319905 nonsynonymous SNV 0.259 4 25 hm5C_associated_SNPs_54386 0 0 1 0 2 Ribosome 0.500231643921169 0.500231643921092 0 1.53432822003197e-13 hm5C_site_49738 DeepMRMD:0;iRNA_m5C:1.53432822003197e-13 49739 chr10 121432086 121432086 1 + G T LUAD 121432084 + 121432064 121432104 41 TCTGTCCAGGGTGCATCGAGCCGGGAGGGCTCACCAGCCAG TCTGTCCAGGGTGCATCGAGCCTGGAGGGCTCACCAGCCAG < 41bp 0.848354419328508 0.546850244468526 0.9276326 0.50919545 prediction 0.603008349719964 Functional Loss - BAG3 ENSG00000151929 CDS Human protein_coding chr10:121432084 chr10:121432086 nonsynonymous SNV 0.838 2 23 hm5C_associated_SNPs_54387 0 0 1 0 1 Nucleus 0.500231643921093 0.500231643921092 0.8368743 2.22044604925031e-16 hm5C_site_49739 DeepMRMD:0.8368743;iRNA_m5C:2.22044604925031e-16 49740 chr8 16942756 16942756 1 + G T LUAD 16942754 + 16942734 16942774 41 TTTTCTGGCAGAGCCACATGCAGGGTTCAGAATAGCTTTCA TTTTCTGGCAGAGCCACATGCATGGTTCAGAATAGCTTTCA < 41bp 0.815672204378658 0.514174036045507 0.88206255 0.14431062 prediction 0.602996336666301 Functional Loss - MICU3 ENSG00000155970 CDS Human protein_coding chr8:16942754 chr8:16942756 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_54388 0 0 0 0 2 cytosol 0.500231643921099 0.500231643766425 0.7641251 3.0934876882327e-10 hm5C_site_49740 DeepMRMD:0.7641251;iRNA_m5C:3.0934876882327e-10 49741 chr17 19559769 19559769 1 + G T SARC 19559767 + 19559747 19559787 41 CATTTTCTATACGGGAAACACTGCGGTTGGCAAAATTGTCA CATTTTCTATACGGGAAACACTTCGGTTGGCAAAATTGTCA < 41bp 0.801490537146726 0.497352781381867 0.099799454 0.017747343 prediction 0.602981074293453 Functional Loss - ALDH3A2 ENSG00000072210 CDS Human protein_coding chr17:19559767 chr17:19559769 nonsynonymous SNV 0.294 1 23 hm5C_associated_SNPs_54389 0 0 1 0 1 Ribosome 0.50023164392109 0.500231643921092 0 0 hm5C_site_49741 DeepMRMD:0;iRNA_m5C:0 49742 chr2 166535349 166535349 1 + G T LUAD 166535346 + 166535326 166535366 41 AACTTGAACTGGAGAAAAACCGAGAGCAGCAAATCCCCACG AACTTGAACTGGAGAAAAACCGATAGCAGCAAATCCCCACG < 41bp 0.852117046481942 0.550634159417694 0.8751081 0.7272672 prediction 0.602965774128496 Functional Loss - CSRNP3 ENSG00000178662 CDS Human protein_coding chr2:166535346 chr2:166535349 stopgain 1.000 1 24 hm5C_associated_SNPs_54390 0 0 0 0 0 exosome 0.500231579921079 0.500231644442954 0.2956818 0 hm5C_site_49742 DeepMRMD:0.2956818;iRNA_m5C:0 49743 chr15 89402488 89402488 1 + G T LGG 89402486 + 89402466 89402506 41 TCCCAGAGTCTGAGTGGACCCAGCAGACCCAGCGCCCTGCA TCCCAGAGTCTGAGTGGACCCATCAGACCCAGCGCCCTGCA < 41bp 0.801480605757122 0.488228133191899 0.6839409 0.09925711 prediction 0.602961211514245 Functional Loss - ACAN ENSG00000157766 CDS Human protein_coding chr15:89402486 chr15:89402488 nonsynonymous SNV 0.542 3 23 hm5C_associated_SNPs_54391 0 0 0 0 0 exosome 0.500231643921092 0.500231643921037 0.3678818 1.10578213252666e-13 hm5C_site_49743 DeepMRMD:0.3678818;iRNA_m5C:1.10578213252666e-13 49744 chr2 233245374 233245374 1 + G T UCEC 233245371 + 233245351 233245391 41 ACATGAAATACGAGATCCACCGAGACTCCACACTGGACCCC ACATGAAATACGAGATCCACCGATACTCCACACTGGACCCC < 41bp 0.885691669451 0.584211170821182 0.06234646 0.015579194 prediction 0.602960997259635 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233245371 chr2:233245374 nonsynonymous SNV 0.055 5 24 hm5C_associated_SNPs_54392 0 0 0 0 1 Endoplasmic reticulum 0.500231643943937 0.500231643932761 0 2.23516760655684e-11 hm5C_site_49744 DeepMRMD:0;iRNA_m5C:2.23516760655684e-11 49745 chr9 130186661 130186661 1 + A C rs186695489 130186657 + 130186637 130186677 41 GTGCGCATGACCGGAAGTGGCGCCAATCAGGCGCGTCCCTC GTGCGCATGACCGGAAGTGGCGCCCATCAGGCGCGTCCCTC < 41bp 0.881924444713669 0.580451642603757 0.8816401 0.33290416 prediction 0.602945604219824 Functional Loss - ZNF79 ENSG00000196152 UTR5 Human protein_coding chr9:130186657 chr9:130186661 . . 0 25 hm5C_associated_SNPs_54393 0 0 0 0 0 cytosol 0.500231640322897 0.500231647822161 0.7632802 0 hm5C_site_49745 DeepMRMD:0.7632802;iRNA_m5C:0 49746 chr19 41597750 41597750 1 + G T LUAD 41597748 + 41597728 41597768 41 CCAAGAAGGTGGAGCACAACCAGCGCACGCTGGATCCCAAT CCAAGAAGGTGGAGCACAACCATCGCACGCTGGATCCCAAT < 41bp 0.842697564938437 0.541232546356958 0.8979981 0.31246784 prediction 0.602930037162957 Functional Loss - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41597748 chr19:41597750 nonsynonymous SNV 0.018 1 23 hm5C_associated_SNPs_54394 0 0 0 0 1 unknown 0.500231643736809 0.500231643921091 0.7959962 0 hm5C_site_49746 DeepMRMD:0.7959962;iRNA_m5C:0 49747 chr12 56515471 56515471 1 + G T UCEC 56515469 + 56515449 56515489 41 CCCTGGCTCAAACAATTGCCCAGGGAATGGCACCTCCACCT CCCTGGCTCAAACAATTGCCCATGGAATGGCACCTCCACCT < 41bp 0.838096413578921 0.536632640464553 0.9367209 0.5240353 prediction 0.602927546228737 Functional Loss - ZC3H10 ENSG00000135482 CDS Human protein_coding chr12:56515469 chr12:56515471 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_54395 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921093 0.8253712 0 hm5C_site_49747 DeepMRMD:0.8253712;iRNA_m5C:0 49748 chr17 26370193 26370193 1 + A C rs188572032 26370189 + 26370169 26370209 41 ACAGCCATATTTCCCATCACCGGCACCGGGGCAGGCTCCTG ACAGCCATATTTCCCATCACCGGCCCCGGGGCAGGCTCCTG < 41bp 0.893545103920972 0.592087712910649 0.33753383 0.22829321 prediction 0.602914782020646 Functional Loss - NLK ENSG00000087095 CDS Human protein_coding chr17:26370189 chr17:26370193 synonymous SNV . 0 25 hm5C_associated_SNPs_54396 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643552311 0 7.37562455555008e-10 hm5C_site_49748 DeepMRMD:0;iRNA_m5C:7.37562455555008e-10 49749 chr13 70681423 70681423 1 + C A LUSC 70681425 - 70681405 70681445 41 GGTGCCAGGCATGGACTTTCCTGGACCACACGAAAAAGGGC GGTGCCAGGCATGGACTTTCCTTGACCACACGAAAAAGGGC < 41bp 0.811475355988661 0.510024988958486 0.26802948 0.10308021 prediction 0.60290073406035 Functional Loss - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681425 chr13:70681423 stopgain 0.982 0 23 hm5C_associated_SNPs_54397 0 0 0 0 1 Nucleus 0.500231643917913 0.500231643921092 0 0 hm5C_site_49749 DeepMRMD:0;iRNA_m5C:0 49750 chr4 108873183 108873183 1 + G T rs554243520 108873180 + 108873160 108873200 41 GGCTACCCCTTGGCCTCATGCTGGAGTTGTGTGTGTCTGTC GGCTACCCCTTGGCCTCATGCTGTAGTTGTGTGTGTCTGTC < 41bp 0.801444465438769 0.473840131756759 0.19396195 0.04020062 prediction 0.602888930877539 Functional Loss - CYP2U1 ENSG00000245293 ncRNA_intronic Human antisense chr4:108873180 chr4:108873183 . . 0 24 hm5C_associated_SNPs_54398 0 0 1 0 0 Ribosome 0.500231636895642 0.500231635211618 0 3.36804828471315e-09 hm5C_site_49750 DeepMRMD:0;iRNA_m5C:3.36804828471315e-09 49751 chr1 210411457 210411457 1 + G T LUAD 210411455 + 210411435 210411475 41 CAAGCTCCTTTGCAGGGAGACCGGGGAGCTGGTCCCCCACT CAAGCTCCTTTGCAGGGAGACCTGGGAGCTGGTCCCCCACT < 41bp 0.801444038969229 0.458160850513065 0.79846454 0.6261488 prediction 0.602888077938458 Functional Loss - SERTAD4 ENSG00000082497 CDS Human protein_coding chr1:210411455 chr1:210411457 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_54399 0 0 1 0 1 exosome 0.500231643921145 0.500231643921092 0.34463148 1.06137321154165e-13 hm5C_site_49751 DeepMRMD:0.34463148;iRNA_m5C:1.06137321154165e-13 49752 chr19 50091798 50091798 1 + G T rs2288920 50091796 + 50091776 50091816 41 CAGCCTGGCTGTGGGGCTGACAGGTGGCATCCTGCTCATTG CAGCCTGGCTGTGGGGCTGACATGTGGCATCCTGCTCATTG < 41bp 0.801443659366304 0.470402513649855 0.7900567 0.13847959 prediction 0.602887318732608 Functional Loss - PRRG2 ENSG00000126460 CDS Human protein_coding chr19:50091796 chr19:50091798 nonsynonymous SNV 0.809 1 23 hm5C_associated_SNPs_54400 0 0 0 0 1 Ribosome 0.500231402132534 0.500273053490918 0.5801134 0 hm5C_site_49752 DeepMRMD:0.5801134;iRNA_m5C:0 49753 chr4 175899058 175899058 1 + G T PAAD 175899056 + 175899036 175899076 41 ATCCTCAGTTGACGCCTTCCCAGAGTCAACCTCCTGTGACA ATCCTCAGTTGACGCCTTCCCATAGTCAACCTCCTGTGACA < 41bp 0.801440076067412 0.482737930128138 0.9102994 0.17954361 prediction 0.602880152134825 Functional Loss - ADAM29 ENSG00000168594 CDS Human protein_coding chr4:175899056 chr4:175899058 nonsynonymous SNV 0.035 2 23 hm5C_associated_SNPs_54401 0 0 0 0 0 exosome 0.500231643922401 0.500231643921093 0.8205988 2.61746180285627e-12 hm5C_site_49753 DeepMRMD:0.8205988;iRNA_m5C:2.61746180285627e-12 49754 chr1 22987468 22987468 1 + G T STAD 22987465 + 22987445 22987485 41 AAAGGTGAATCGGGAGACTACAAGGCCACCCAGAAAATCGC AAAGGTGAATCGGGAGACTACAATGCCACCCAGAAAATCGC < 41bp 0.801439953572034 0.419260497449602 0.8946394 0.22377676 prediction 0.602879907144068 Functional Loss - C1QB ENSG00000173369 CDS Human protein_coding chr1:22987465 chr1:22987468 nonsynonymous SNV 0.993 2 24 hm5C_associated_SNPs_54402 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.7892788 0 hm5C_site_49754 DeepMRMD:0.7892788;iRNA_m5C:0 49755 chr1 86046687 86046687 1 + G T UCEC 86046684 + 86046664 86046704 41 CACAATGAGCTCCCGCATCGCCAGGGCGCTCGCCTTAGTCG CACAATGAGCTCCCGCATCGCCATGGCGCTCGCCTTAGTCG < 41bp 0.801435936838093 0.435556775038858 0.24618575 0.046715885 prediction 0.602871873676186 Functional Loss - CYR61 ENSG00000142871 CDS Human protein_coding chr1:86046684 chr1:86046687 nonsynonymous SNV 0.075 1 24 hm5C_associated_SNPs_54403 0 0 0 0 1 Endoplasmic reticulum 0.500231349525112 0.500225086328215 0 1.25263937955644e-05 hm5C_site_49755 DeepMRMD:0;iRNA_m5C:1.25263937955644e-05 49756 chr4 184210713 184210713 1 + G T LUSC 184210711 + 184210691 184210731 41 AGCTGGAGGAACTGAAAGCTCAGGGAGAGACTGACCTTCCA AGCTGGAGGAACTGAAAGCTCATGGAGAGACTGACCTTCCA < 41bp 0.814426490056697 0.5129966072846 0.92141616 0.8951574 prediction 0.602859765544195 Functional Loss - WWC2 ENSG00000151718 CDS Human protein_coding chr4:184210711 chr4:184210713 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_54404 0 0 1 0 1 Cytosol 0.500231238412697 0.500231600473502 0.0525175200000001 0 hm5C_site_49756 DeepMRMD:0.0525175200000001;iRNA_m5C:0 49757 chr2 114256887 114256887 1 + G T UCEC 114256884 + 114256864 114256904 41 TCCACACCGCAGCGCAGCCTCCGGGACTCCGATGGGGAAGA TCCACACCGCAGCGCAGCCTCCGTGACTCCGATGGGGAAGA < 41bp 0.801423953703736 0.425583393215349 0.86168015 0.23769057 prediction 0.602847907407471 Functional Loss - FOXD4L1 ENSG00000184492 CDS Human protein_coding chr2:114256884 chr2:114256887 synonymous SNV . 0 24 hm5C_associated_SNPs_54405 0 0 0 0 0 exosome 0.500231631795047 0.500231643912282 0.7233603 0 hm5C_site_49757 DeepMRMD:0.7233603;iRNA_m5C:0 49758 chr11 4470630 4470630 1 + G T LUSC 4470627 + 4470607 4470647 41 CCTTCTTGTTGGTGGGGATTCCAGGCCTGGAACACCTGCAC CCTTCTTGTTGGTGGGGATTCCATGCCTGGAACACCTGCAC < 41bp 0.801419807467646 0.428693444763237 0.4177845 0.12725797 prediction 0.602839614935293 Functional Loss - OR52K2 ENSG00000181963 CDS Human protein_coding chr11:4470627 chr11:4470630 nonsynonymous SNV 0.987 4 24 hm5C_associated_SNPs_54406 0 0 0 0 0 exosome 0.500231643921326 0.500231643921092 0 4.67403893367191e-13 hm5C_site_49758 DeepMRMD:0;iRNA_m5C:4.67403893367191e-13 49759 chr22 41969722 41969722 1 + G T UCEC 41969720 + 41969700 41969740 41 GTAAGCAGTTCTCACGCTCACAGGGCCATGGCTTCATCACC GTAAGCAGTTCTCACGCTCACATGGCCATGGCTTCATCACC < 41bp 0.801419666718558 0.456780321933484 0.90337974 0.13277996 prediction 0.602839333437116 Functional Loss - CSDC2 ENSG00000172346 CDS Human protein_coding chr22:41969720 chr22:41969722 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_54407 0 0 0 0 2 Endoplasmic reticulum 0.500231643921093 0.500231643922925 0.80675948 0 hm5C_site_49759 DeepMRMD:0.80675948;iRNA_m5C:0 49760 chr20 2297787 2297787 1 + G T LUSC 2297784 + 2297764 2297804 41 TTACACCGGTGGCCGGGACCCAAGGAGCTGGAACGGCAGCG TTACACCGGTGGCCGGGACCCAATGAGCTGGAACGGCAGCG < 41bp 0.801414489240876 0.408759421930702 0.8704358 0.41513872 prediction 0.602828978481753 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2297784 chr20:2297787 nonsynonymous SNV 0.965 4 24 hm5C_associated_SNPs_54408 0 0 0 0 1 exosome 0.500231643921092 0.500231643921075 0.7408716 3.41948691584548e-14 hm5C_site_49760 DeepMRMD:0.7408716;iRNA_m5C:3.41948691584548e-14 49761 chr7 6620309 6620309 1 + G T UCEC 6620307 + 6620287 6620327 41 GCCTGGCCAGGGGAGGAGCACAGGTAAGGATGATCCTTGGA GCCTGGCCAGGGGAGGAGCACATGTAAGGATGATCCTTGGA < 41bp 0.801413879834813 0.477718469196471 0.8967023 0.4055156 prediction 0.602827759669625 Functional Loss - ZDHHC4 ENSG00000136247 CDS Human protein_coding chr7:6620307 chr7:6620309 nonsynonymous SNV 0.546 2 23 hm5C_associated_SNPs_54409 0 0 1 0 1 Cytosol 0.500231643921107 0.500231643921027 0.7934046 1.61426427780498e-13 hm5C_site_49761 DeepMRMD:0.7934046;iRNA_m5C:1.61426427780498e-13 49762 chr4 1746346 1746346 1 + G T SARC 1746344 + 1746324 1746364 41 AGGCCCACGCGGAGGAGAAGCTGCAGCTGTGAGTGCTGGGC AGGCCCACGCGGAGGAGAAGCTTCAGCTGTGAGTGCTGGGC < 41bp 0.830034005613156 0.528645415097772 0.42121154 0.24541697 prediction 0.602777181030768 Functional Loss - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1746344 chr4:1746346 synonymous SNV . 0 23 hm5C_associated_SNPs_54410 0 0 1 0 1 Cytosol 0.500231644047842 0.500231643921283 0 2.5311708284903e-10 hm5C_site_49762 DeepMRMD:0;iRNA_m5C:2.5311708284903e-10 49763 chr7 50468266 50468266 1 + G T LUAD 50468263 + 50468243 50468283 41 ACATGTGCGGCTACCACAGCCAGGACCGGTACGAGTTCTCG ACATGTGCGGCTACCACAGCCAGTACCGGTACGAGTTCTCG < 41bp 0.830942256190201 0.529555852964288 0.87340176 0.15934435 prediction 0.602772806451827 Functional Loss - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50468263 chr7:50468266 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54411 0 0 0 0 0 Cytosol 0.500231668111659 0.500231643921026 0.74680352 4.83812667706474e-08 hm5C_site_49763 DeepMRMD:0.74680352;iRNA_m5C:4.83812667706474e-08 49764 chr19 51380140 51380140 1 + G T UCEC 51380138 + 51380118 51380158 41 TGACCCATAGTCTTGCGCCCCAGGAGTCTTCAGTGTGTGAG TGACCCATAGTCTTGCGCCCCATGAGTCTTCAGTGTGTGAG < 41bp 0.801381748388397 0.470103373427019 0.9187486 0.17234167 prediction 0.602763496776795 Functional Loss - KLK2 ENSG00000167751;ENSG00000167751 exonic;splicing Human other chr19:51380138 chr19:51380140 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_54412 0 0 0 0 1 Cytosol 0.500223354185733 0.500231767948792 0.8374972 0 hm5C_site_49764 DeepMRMD:0.8374972;iRNA_m5C:0 49765 chr17 43227267 43227267 1 + G T PAAD 43227265 + 43227245 43227285 41 GCCGCCAAATCCGACGACACCAGCGATGACGACTTCATGGA GCCGCCAAATCCGACGACACCATCGATGACGACTTCATGGA < 41bp 0.836301810063362 0.534928441434499 0.18917537 0.080857456 prediction 0.602746737257725 Functional Loss - HEXIM1 ENSG00000186834 CDS Human protein_coding chr17:43227265 chr17:43227267 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_54413 0 0 0 0 0 Ribosome 0.500231642793058 0.500230210778556 0 2.86402900506744e-06 hm5C_site_49765 DeepMRMD:0;iRNA_m5C:2.86402900506744e-06 49766 chr16 24920225 24920225 1 + G C LUSC 24920224 + 24920204 24920244 41 TGCCTTCTGGGGCCTGATCTCGGGCCTGCTCCTGGGCTTGG TGCCTTCTGGGGCCTGATCTCCGGCCTGCTCCTGGGCTTGG < 41bp 0.80568040323238 0.504307834729186 0.944624 0.9019211 prediction 0.60274513700639 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24920224 chr16:24920225 synonymous SNV . 0 22 hm5C_associated_SNPs_54414 0 0 0 0 0 exosome 0.500231643921092 0.500231644053327 0.0854058 0 hm5C_site_49766 DeepMRMD:0.0854058;iRNA_m5C:0 49767 chr17 33477122 33477122 1 + G T UCEC 33477120 + 33477100 33477140 41 TGTATCGGCGATGCCAGGCACTGGAGCACCTGGGGAAGCTG TGTATCGGCGATGCCAGGCACTTGAGCACCTGGGGAAGCTG < 41bp 0.843888351104546 0.542535924422197 0.76696765 0.4540619 prediction 0.602704853364698 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33477120 chr17:33477122 synonymous SNV . 0 23 hm5C_associated_SNPs_54415 0 0 0 0 1 Nucleus 0.50022812129719 0.500231147854695 0.5339353 0 hm5C_site_49767 DeepMRMD:0.5339353;iRNA_m5C:0 49768 chr12 71833921 71833921 1 + G T HNSC 71833919 + 71833899 71833939 41 TGTGCTGCTGCAGCTGGCGACCGGGGGCAGCTCTCCCAGGT TGTGCTGCTGCAGCTGGCGACCTGGGGCAGCTCTCCCAGGT < 41bp 0.849679522392962 0.548333425172111 0.9347054 0.8112297 prediction 0.602692194441701 Functional Loss - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71833919 chr12:71833921 nonsynonymous SNV 0.731 2 23 hm5C_associated_SNPs_54416 0 0 1 0 0 Nucleus 0.500231644825367 0.500231643946826 0.2469514 1.75708181338052e-09 hm5C_site_49768 DeepMRMD:0.2469514;iRNA_m5C:1.75708181338052e-09 49769 chr8 106573666 106573666 1 + G T LUAD 106573664 + 106573644 106573684 41 CAACTTCCAGTGGGAACAACCTGGGGGCCGTTTCCTGGGAA CAACTTCCAGTGGGAACAACCTTGGGGCCGTTTCCTGGGAA < 41bp 0.801345526900617 0.498425970589879 0.9191716 0.37498856 prediction 0.602691053801235 Functional Loss - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106573664 chr8:106573666 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54417 0 0 1 0 2 chromatin 0.5002316439157 0.500231643664051 0.8383432 5.03296959664112e-10 hm5C_site_49769 DeepMRMD:0.8383432;iRNA_m5C:5.03296959664112e-10 49770 chr1 158724839 158724839 1 + G T STAD 158724837 + 158724817 158724857 41 TAATAATGTTCATTGTCATCCAGGTGGGCATGGCCCTGCAC TAATAATGTTCATTGTCATCCATGTGGGCATGGCCCTGCAC < 41bp 0.801327339681403 0.484863877272313 0.87174976 0.27698207 prediction 0.602654679362807 Functional Loss - OR6K6 ENSG00000180433 CDS Human protein_coding chr1:158724837 chr1:158724839 nonsynonymous SNV 0.950 0 23 hm5C_associated_SNPs_54418 0 0 0 0 0 unknown 0.500231653117842 0.500231643921193 0.74349952 1.83932973296663e-08 hm5C_site_49770 DeepMRMD:0.74349952;iRNA_m5C:1.83932973296663e-08 49771 chr1 154295829 154295829 1 + G T SKCM 154295827 + 154295807 154295847 41 TGTCCCTGAACAATGGCTTCCTGGATCAGGTAAGTGTGAGG TGTCCCTGAACAATGGCTTCCTTGATCAGGTAAGTGTGAGG < 41bp 0.812855675921978 0.511535572068673 0.0711714 0.016256928 prediction 0.602640207706611 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295827 chr1:154295829 synonymous SNV . 0 23 hm5C_associated_SNPs_54419 0 0 0 0 1 Ribosome 0.500231643921093 0.500231643924131 0 0 hm5C_site_49771 DeepMRMD:0;iRNA_m5C:0 49772 chr4 1374776 1374776 1 + G T UCEC 1374774 + 1374754 1374794 41 GCTGCAGAAGCAGGAGCGCCCGGGTAGGTCTGGGCAAGGCG GCTGCAGAAGCAGGAGCGCCCGTGTAGGTCTGGGCAAGGCG < 41bp 0.801317176070889 0.470801159274031 0.8115258 0.36102864 prediction 0.602634352141777 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1374774 chr4:1374776 stopgain 0.250 1 23 hm5C_associated_SNPs_54420 0 0 0 0 1 Nucleus 0.500231643921446 0.500231643921334 0.6230516 2.22710738739806e-13 hm5C_site_49772 DeepMRMD:0.6230516;iRNA_m5C:2.22710738739806e-13 49773 chr16 1817858 1817858 1 + G T CESC 1817855 + 1817835 1817875 41 CGCATCACGGCCCTGCTTGTCGCGGGCAGCCGGCTCTGGGT CGCATCACGGCCCTGCTTGTCGCTGGCAGCCGGCTCTGGGT < 41bp 0.801307728219144 0.423045284267544 0.9052994 0.24260223 prediction 0.602615456438287 Functional Loss - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1817855 chr16:1817858 synonymous SNV . 0 24 hm5C_associated_SNPs_54421 0 0 1 0 1 chromatin 0.50023164257529 0.50023164392759 0.8105988 0 hm5C_site_49773 DeepMRMD:0.8105988;iRNA_m5C:0 49774 chr3 9719032 9719032 1 + G T LGG 9719030 + 9719010 9719050 41 TTTTCAAGGAATATAAAGATCGGGATTACATGGCAGAAGGG TTTTCAAGGAATATAAAGATCGTGATTACATGGCAGAAGGG < 41bp 0.801294046828069 0.489508442956224 0.898018 0.0870066 prediction 0.602588093656139 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9719030 chr3:9719032 synonymous SNV . 0 23 hm5C_associated_SNPs_54422 0 0 1 0 2 Ribosome 0.500231643921092 0.500231641694116 0.796036 4.45395254011771e-09 hm5C_site_49774 DeepMRMD:0.796036;iRNA_m5C:4.45395254011771e-09 49775 chr19 52887959 52887959 1 + G T KIRC 52887957 + 52887937 52887977 41 CAGACATCAAAGAATCCATACTGGAGAGAAACCTTATGAAT CAGACATCAAAGAATCCATACTTGAGAGAAACCTTATGAAT < 41bp 0.806263676537574 0.504994845170887 0.12804332 0.03033793 prediction 0.602537662733373 Functional Loss - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52887957 chr19:52887959 stopgain 0.990 0 23 hm5C_associated_SNPs_54423 0 0 0 0 0 Exosome 0.50023164393089 0.500231643921953 0 1.78734804734404e-11 hm5C_site_49775 DeepMRMD:0;iRNA_m5C:1.78734804734404e-11 49776 chr9 71152351 71152351 1 + G T LUAD 71152348 + 71152328 71152368 41 GCCAGAGGCCTCTCTCTCTGCAGGACAGCTCTGCTTTTCCA GCCAGAGGCCTCTCTCTCTGCAGTACAGCTCTGCTTTTCCA < 41bp 0.80126732791521 0.433550615371425 0.13109306 0.023239076 prediction 0.60253465583042 Functional Loss - TMEM252 ENSG00000181778 CDS Human protein_coding chr9:71152348 chr9:71152351 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_54424 0 0 0 0 0 exosome 0.500231638837073 0.500231643890812 0 0 hm5C_site_49776 DeepMRMD:0;iRNA_m5C:0 49777 chr16 3072172 3072172 1 + G T rs190588947 3072169 + 3072149 3072189 41 CTTGGGGGGCAGACTTGACACTAGGCCCCACTCACTCAGAT CTTGGGGGGCAGACTTGACACTATGCCCCACTCACTCAGAT < 41bp 0.841366958159589 0.540113790792335 0.65401417 0.1746361 prediction 0.602506334734507 Functional Loss - TNFRSF12A ENSG00000006327 UTR3 Human protein_coding chr16:3072169 chr16:3072172 . . 0 24 hm5C_associated_SNPs_54425 0 0 1 0 0 Ribosome 0.500231643921148 0.500231643921167 0.30802834 0 hm5C_site_49777 DeepMRMD:0.30802834;iRNA_m5C:0 49778 chr17 7606341 7606341 1 + G T LUAD 7606338 + 7606318 7606358 41 CAGTTCCTAGTGAGTGGCAGCACGAGCGGGGCTGTCTCTGT CAGTTCCTAGTGAGTGGCAGCACTAGCGGGGCTGTCTCTGT < 41bp 0.882657655150754 0.58143127803234 0.22813681 0.04363203 prediction 0.602452754236828 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606338 chr17:7606341 synonymous SNV . 0 24 hm5C_associated_SNPs_54426 0 0 0 0 1 Ribosome 0.500231643188871 0.500231648530379 0 0 hm5C_site_49778 DeepMRMD:0;iRNA_m5C:0 49779 chr5 140625383 140625383 1 + G T LUAD 140625381 + 140625361 140625401 41 AACAAGGCTTGCAGCTTGATCTGCAGACCGGGCAGTTGATA AACAAGGCTTGCAGCTTGATCTTCAGACCGGGCAGTTGATA < 41bp 0.805770024777433 0.504549474973413 0.1875667 0.49374202 prediction 0.60244109960804 Functional Loss - PCDHB15 ENSG00000113248 CDS Human protein_coding chr5:140625381 chr5:140625383 synonymous SNV . 0 23 hm5C_associated_SNPs_54427 0 0 0 0 0 exosome 0.50023442415943 0.500231884997111 0 5.07832463791935e-06 hm5C_site_49779 DeepMRMD:0;iRNA_m5C:5.07832463791935e-06 49780 chr12 121125332 121125332 1 + G T LUAD 121125330 + 121125310 121125350 41 CCTTTGGAAGGCCGGGTGGGCCGAGGTGAGAGTCCCCCTGC CCTTTGGAAGGCCGGGTGGGCCTAGGTGAGAGTCCCCCTGC < 41bp 0.839417187445365 0.538202510554116 0.9283649 0.8356807 prediction 0.602429353782498 Functional Loss - MLEC ENSG00000110917 CDS Human protein_coding chr12:121125330 chr12:121125332 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_54428 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921095 0.1853684 0 hm5C_site_49780 DeepMRMD:0.1853684;iRNA_m5C:0 49781 chr11 9522759 9522759 1 + A C STAD 9522755 + 9522735 9522775 41 ACCTTATTACTGCACAGAGCCAGGATGTGGGAGGGCATTTG ACCTTATTACTGCACAGAGCCAGGCTGTGGGAGGGCATTTG < 41bp 0.899140443283203 0.597945592942112 0.89437073 0.8406736 prediction 0.602389700682182 Functional Loss - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9522755 chr11:9522759 synonymous SNV . 0 25 hm5C_associated_SNPs_54429 0 0 1 0 1 chromatin 0.500231978060629 0.500232000811516 0.10739426 0 hm5C_site_49781 DeepMRMD:0.10739426;iRNA_m5C:0 49782 chr8 33346310 33346310 1 + G T LUAD 33346307 + 33346287 33346327 41 GCGGCTTTTCCTCGGCGTCTCTGGGAACGGGTAAGCCTTAC GCGGCTTTTCCTCGGCGTCTCTGTGAACGGGTAAGCCTTAC < 41bp 0.874648082986916 0.573473175515045 0.20560661 0.052428365 prediction 0.602349814943743 Functional Loss - MAK16 ENSG00000198042 CDS Human protein_coding chr8:33346307 chr8:33346310 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54430 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921098 0 0 hm5C_site_49782 DeepMRMD:0;iRNA_m5C:0 49783 chr16 88779765 88779765 1 + G T LGG 88779762 + 88779742 88779782 41 GCCCGAGCCCACGGCTACTCCAAGGTCATGACTGGGGACAG GCCCGAGCCCACGGCTACTCCAATGTCATGACTGGGGACAG < 41bp 0.897011060080038 0.595858036844387 0.93239045 0.2406294 prediction 0.602306046471302 Functional Loss - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779762 chr16:88779765 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_54431 0 0 0 0 2 Cytosol 0.500231643921089 0.500231643921092 0.8647809 0 hm5C_site_49783 DeepMRMD:0.8647809;iRNA_m5C:0 49784 chr7 155530331 155530331 1 + G T UCEC 155530329 + 155530309 155530349 41 GGAGAGCCCCACCCCCGCCTCAGGATCGAGACCCTTTCTTC GGAGAGCCCCACCCCCGCCTCATGATCGAGACCCTTTCTTC < 41bp 0.801136498904978 0.469076178129608 0.90799373 0.15707499 prediction 0.602272997809955 Functional Loss - RBM33 ENSG00000184863 CDS Human protein_coding chr7:155530329 chr7:155530331 nonsynonymous SNV 0.991 3 23 hm5C_associated_SNPs_54432 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0.81598746 0 hm5C_site_49784 DeepMRMD:0.81598746;iRNA_m5C:0 49785 chr11 48286105 48286105 1 + G T UCEC 48286103 + 48286083 48286123 41 GAAGCCACAACTTGGAGGGGCAGCACAAGGCCCTCTCCACC GAAGCCACAACTTGGAGGGGCATCACAAGGCCCTCTCCACC < 41bp 0.828019357761567 0.526892475947247 0.8552492 0.51691484 prediction 0.60225376362864 Functional Loss - OR4X1 ENSG00000176567 CDS Human protein_coding chr11:48286103 chr11:48286105 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_54433 0 0 0 0 0 unknown 0.500231679237019 0.500231643921107 0.67666872 7.06318243892667e-08 hm5C_site_49785 DeepMRMD:0.67666872;iRNA_m5C:7.06318243892667e-08 49786 chr4 113347640 113347640 1 + G T UCEC 113347638 + 113347618 113347658 41 TTCAGGGATGTGGTACGAAGCAGCAGAGTTAATATGGGCCT TTCAGGGATGTGGTACGAAGCATCAGAGTTAATATGGGCCT < 41bp 0.822153831217978 0.521060826284634 0.3236165 0.117302954 prediction 0.602186009866687 Functional Loss - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113347638 chr4:113347640 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_54434 0 0 0 0 2 chromatin 0.500231611606918 0.500231643917313 0 0 hm5C_site_49786 DeepMRMD:0;iRNA_m5C:0 49787 chr11 119050860 119050860 1 + A C rs74950586 119050856 + 119050836 119050876 41 CCTGGCAGGTGTGCGCATGACACCAGTCAAGTGCACAGTGG CCTGGCAGGTGTGCGCATGACACCCGTCAAGTGCACAGTGG < 41bp 0.90894754706171 0.607855366689642 0.28202105 0.10906896 prediction 0.602184360744135 Functional Loss - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119050856 chr11:119050860 synonymous SNV . 0 25 hm5C_associated_SNPs_54435 0 0 0 0 0 exosome 0.500235976375739 0.500234565597402 0 2.82155667563622e-06 hm5C_site_49787 DeepMRMD:0;iRNA_m5C:2.82155667563622e-06 49788 chr12 48578018 48578018 1 + G T SARC 48578016 + 48577996 48578036 41 GTGATCTCCGGGGAGTACAACGGCGGCATGAAGGAACTGAT GTGATCTCCGGGGAGTACAACGTCGGCATGAAGGAACTGAT < 41bp 0.801091477037075 0.474718509640778 0.89517415 0.22779408 prediction 0.60218295407415 Functional Loss - CCDC184 ENSG00000177875 CDS Human protein_coding chr12:48578016 chr12:48578018 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_54436 0 0 0 0 0 exosome 0.499708855847313 0.500230206377488 0.7903483 0 hm5C_site_49788 DeepMRMD:0.7903483;iRNA_m5C:0 49789 chr10 95372737 95372737 1 + G T UCEC 95372735 + 95372715 95372755 41 AGGGGGTTCACAGGGCCCTGCAGAGGCTGGCCCACCTGCTC AGGGGGTTCACAGGGCCCTGCATAGGCTGGCCCACCTGCTC < 41bp 0.862331549518793 0.561240138194707 0.91837937 0.7302557 prediction 0.602182822648172 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95372735 chr10:95372737 nonsynonymous SNV 0.985 3 23 hm5C_associated_SNPs_54437 0 0 0 0 0 Nucleus 0.500231643921622 0.500231638824234 0.37624734 1.01947770225763e-08 hm5C_site_49789 DeepMRMD:0.37624734;iRNA_m5C:1.01947770225763e-08 49790 chr15 74572368 74572368 1 + G C HNSC 74572367 + 74572347 74572387 41 AGTCCTTCCTCTTCCAAGGCCGAGATGGAGCTACCAGCTTC AGTCCTTCCTCTTCCAAGGCCCAGATGGAGCTACCAGCTTC < 41bp 0.801069125607892 0.492441590590257 0.30677694 0.104029745 prediction 0.602138251215785 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74572367 chr15:74572368 nonsynonymous SNV 0.952 2 22 hm5C_associated_SNPs_54438 0 0 0 0 2 exosome 0.500231643728992 0.500231636061218 0 1.53355479426409e-08 hm5C_site_49790 DeepMRMD:0;iRNA_m5C:1.53355479426409e-08 49791 chr15 74572370 74572370 1 + G T UCEC 74572367 + 74572347 74572387 41 AGTCCTTCCTCTTCCAAGGCCGAGATGGAGCTACCAGCTTC AGTCCTTCCTCTTCCAAGGCCGATATGGAGCTACCAGCTTC < 41bp 0.801069125607892 0.413363235220429 0.30677694 0.036218494 prediction 0.602138251215785 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74572367 chr15:74572370 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_54439 0 0 0 0 2 exosome 0.500231643728992 0.500231643921086 0 0 hm5C_site_49791 DeepMRMD:0;iRNA_m5C:0 49792 chr16 722181 722181 1 + G T UCEC 722179 + 722159 722199 41 GGACCAGGCCCATGCCATCACAGGTAGGCACCCACCCTCCC GGACCAGGCCCATGCCATCACATGTAGGCACCCACCCTCCC < 41bp 0.801068215288494 0.470875345501686 0.8901727 0.7122817 prediction 0.602136430576988 Functional Loss - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722179 chr16:722181 nonsynonymous SNV 0.829 4 23 hm5C_associated_SNPs_54440 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921109 0.355782 0 hm5C_site_49792 DeepMRMD:0.355782;iRNA_m5C:0 49793 chr12 56547784 56547784 1 + G T GBM 56547782 + 56547762 56547802 41 TGCTGCTAAGCCAGCAGCAGCAGGGGCTCCTCCAGCCAAGA TGCTGCTAAGCCAGCAGCAGCATGGGCTCCTCCAGCCAAGA < 41bp 0.853888664657471 0.552823883992171 0.94447976 0.14941248 prediction 0.602129561330601 Functional Loss - MYL6B ENSG00000196465 CDS Human protein_coding chr12:56547782 chr12:56547784 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_54441 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.88895952 0 hm5C_site_49793 DeepMRMD:0.88895952;iRNA_m5C:0 49794 chr6 167754996 167754996 1 + G T UCEC 167754993 + 167754973 167755013 41 CAGTCGCACTCCTGCAAGACCAAGACCTCCCCGTGTGTCCT CAGTCGCACTCCTGCAAGACCAATACCTCCCCGTGTGTCCT < 41bp 0.801060194831429 0.416799011585999 0.1251865 0.029443383 prediction 0.602120389662857 Functional Loss - TTLL2 ENSG00000120440 CDS Human protein_coding chr6:167754993 chr6:167754996 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_54442 0 0 0 0 0 Exosome 0.500231643619347 0.500231660651816 0 0 hm5C_site_49794 DeepMRMD:0;iRNA_m5C:0 49795 chr11 60264894 60264894 1 + G T BLCA 60264891 + 60264871 60264911 41 CTCCTGGATTTCAACAGCCTCTGGGTTCAATCAACTTAGAA CTCCTGGATTTCAACAGCCTCTGTGTTCAATCAACTTAGAA < 41bp 0.801055516771439 0.434055687530133 0.12662092 0.16337687 prediction 0.602111033542878 Functional Loss - MS4A12 ENSG00000071203 CDS Human protein_coding chr11:60264891 chr11:60264894 nonsynonymous SNV 0.010 3 24 hm5C_associated_SNPs_54443 0 0 0 0 0 unknown 0.500231643921058 0.50023080440933 0 1.67902345737936e-06 hm5C_site_49795 DeepMRMD:0;iRNA_m5C:1.67902345737936e-06 49796 chr11 33373278 33373278 1 + G T UCEC 33373276 + 33373256 33373296 41 GGAGGACACTCATGAAAACACAGAATTGGTATCCTCTGCTG GGAGGACACTCATGAAAACACATAATTGGTATCCTCTGCTG < 41bp 0.808319152169723 0.507264123592951 0.15871224 0.11529836 prediction 0.602110057153543 Functional Loss - HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33373276 chr11:33373278 stopgain 0.131 0 23 hm5C_associated_SNPs_54444 0 0 0 0 0 Cytosol 0.500231435957665 0.500231653447175 0 0 hm5C_site_49796 DeepMRMD:0;iRNA_m5C:0 49797 chr3 138669106 138669106 1 + G T COAD 138669104 + 138669084 138669124 41 GATACAGACGCTTTTCTCCCCAGGGCCGGGAATCCTGCAAC GATACAGACGCTTTTCTCCCCATGGCCGGGAATCCTGCAAC < 41bp 0.801052659822834 0.474255580140088 0.89849603 0.76848376 prediction 0.602105319645668 Functional Loss - FOXL2NB ENSG00000206262 splicing Human protein_coding chr3:138669104 chr3:138669106 . 0.001 0 23 hm5C_associated_SNPs_54445 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.26002454 0 hm5C_site_49797 DeepMRMD:0.26002454;iRNA_m5C:0 49798 chr19 51297750 51297750 1 + G T UCEC 51297747 + 51297727 51297767 41 TGCTGGCCCTCCAGGGGGCCCTGGGCCTCTATGATGGACAC TGCTGGCCCTCCAGGGGGCCCTGTGCCTCTATGATGGACAC < 41bp 0.801041955059676 0.418697868185862 0.17743191 0.0474661 prediction 0.602083910119352 Functional Loss - ACPT ENSG00000142513 CDS Human protein_coding chr19:51297747 chr19:51297750 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_54446 0 0 0 0 1 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_49798 DeepMRMD:0;iRNA_m5C:0 49799 chr16 72142724 72142724 1 + G T LUAD 72142722 + 72142702 72142742 41 ATCGGGGAGTACGTGAACATCCGCACAGGGATGCCCTGCCA ATCGGGGAGTACGTGAACATCCTCACAGGGATGCCCTGCCA < 41bp 0.801036810838891 0.483694925596244 0.1592029 0.08720252 prediction 0.602073621677782 Functional Loss - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142722 chr16:72142724 nonsynonymous SNV 0.961 1 23 hm5C_associated_SNPs_54447 0 0 0 0 1 Cytosol 0.500247113672057 0.500232099730929 0 3.0027882256034e-05 hm5C_site_49799 DeepMRMD:0;iRNA_m5C:3.0027882256034e-05 49800 chr1 110033841 110033841 1 + G T UCEC 110033838 + 110033818 110033858 41 TTCAGCAAGCTGCCGCCTTCCAAGGCCAGCAAGTCATCCAA TTCAGCAAGCTGCCGCCTTCCAATGCCAGCAAGTCATCCAA < 41bp 0.881584277752231 0.580556077601334 0.45037186 0.05662301 prediction 0.602056400301793 Functional Loss - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110033838 chr1:110033841 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54448 0 0 0 0 0 nucleoplasm 0.50023164392128 0.500231643920162 0 2.23643326080492e-12 hm5C_site_49800 DeepMRMD:0;iRNA_m5C:2.23643326080492e-12 49801 chr1 1391224 1391224 1 + G T LUSC 1391221 + 1391201 1391241 41 GCCATAATGACAAGGAACATCAAGAAGAACCGGGGCCTGTA GCCATAATGACAAGGAACATCAATAAGAACCGGGGCCTGTA < 41bp 0.888342353182456 0.587340315116567 0.7616133 0.34404078 prediction 0.602004076131778 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1391221 chr1:1391224 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_54449 0 0 0 0 2 Nucleus 0.500231626497487 0.500231643921092 0.5232266 0 hm5C_site_49801 DeepMRMD:0.5232266;iRNA_m5C:0 49802 chr9 133543603 133543603 1 + G T UCEC 133543601 + 133543581 133543621 41 GATGCCAGCCAGGAGGACCACCGGAGCTGGATGACCTACAT GATGCCAGCCAGGAGGACCACCTGAGCTGGATGACCTACAT < 41bp 0.800998777655484 0.469606000827238 0.6812556 0.13549164 prediction 0.601997555310969 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133543601 chr9:133543603 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54450 0 0 0 0 2 exosome 0.500231090314587 0.500231622583509 0.3625112 0 hm5C_site_49802 DeepMRMD:0.3625112;iRNA_m5C:0 49803 chr15 38990502 38990502 1 + G T LUSC 38990500 + 38990480 38990520 41 GCTCATGTCTTCAGACAATGCTGGGTCCAAGGAAATGCATG GCTCATGTCTTCAGACAATGCTTGGTCCAAGGAAATGCATG < 41bp 0.831456001239074 0.530463903338315 0.21331584 0.057230175 prediction 0.601984195801519 Functional Loss - C15orf53 ENSG00000175779 CDS Human protein_coding chr15:38990500 chr15:38990502 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_54451 0 0 0 0 0 exosome 0.50023164392796 0.500231650114007 0 0 hm5C_site_49803 DeepMRMD:0;iRNA_m5C:0 49804 chr4 8288388 8288388 1 + A C BLCA 8288384 + 8288364 8288404 41 ACCAATGCCCACGTGGTGTCCAGCAACAGTGCTGCCCCGGG ACCAATGCCCACGTGGTGTCCAGCCACAGTGCTGCCCCGGG < 41bp 0.80098512149989 0.385774102959565 0.37320295 0.1232599 prediction 0.601970242999781 Functional Loss - HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8288384 chr4:8288388 nonsynonymous SNV 0.371 1 25 hm5C_associated_SNPs_54452 0 0 0 0 0 exosome 0.500231643921069 0.500231643871219 0 9.97018023696228e-11 hm5C_site_49804 DeepMRMD:0;iRNA_m5C:9.97018023696228e-11 49805 chr7 53103565 53103565 1 + G T LUSC 53103563 + 53103543 53103583 41 AGAGCCATATTCAGTACTTCCAGTGGGGGCGCCCGGTGCCC AGAGCCATATTCAGTACTTCCATTGGGGGCGCCCGGTGCCC < 41bp 0.800981544848165 0.4747578618768 0.74016416 0.36695284 prediction 0.60196308969633 Functional Loss - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103563 chr7:53103565 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_54453 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0.48032832 0 hm5C_site_49805 DeepMRMD:0.48032832;iRNA_m5C:0 49806 chr11 17741528 17741528 1 + G T LUAD 17741526 + 17741506 17741546 41 CGAAGAGCACTCGCACTTCCCCGCGGCGGTGCACCCGGCCC CGAAGAGCACTCGCACTTCCCCTCGGCGGTGCACCCGGCCC < 41bp 0.800962545853681 0.463741579039046 0.85879135 0.25711548 prediction 0.601925091707362 Functional Loss - MYOD1 ENSG00000129152 CDS Human protein_coding chr11:17741526 chr11:17741528 nonsynonymous SNV 0.041 1 23 hm5C_associated_SNPs_54454 0 0 0 0 0 unknown 0.500231643279255 0.500231643918623 0.7175827 0 hm5C_site_49806 DeepMRMD:0.7175827;iRNA_m5C:0 49807 chr11 114569009 114569009 1 + G T LUSC 114569006 + 114568986 114569026 41 AACCCTCAAGATACGTACTGCAGGGGGGATCAGCTGGACAT AACCCTCAAGATACGTACTGCAGTGGGGATCAGCTGGACAT < 41bp 0.887498826070077 0.586544995673846 0.41680828 0.058315724 prediction 0.601907660792462 Functional Loss - NXPE2 ENSG00000204361 CDS Human protein_coding chr11:114569006 chr11:114569009 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_54455 0 0 0 0 0 exosome 0.500231643921103 0.500231643920914 0 3.79030140607028e-13 hm5C_site_49807 DeepMRMD:0;iRNA_m5C:3.79030140607028e-13 49808 chr17 61937576 61937576 1 + G T rs191038457 61937573 + 61937553 61937593 41 CTGCTGAAAACACAGAGTAACGGGTTGGTGATTCGGCTGTA CTGCTGAAAACACAGAGTAACGGTTTGGTGATTCGGCTGTA < 41bp 0.800951178104545 0.456533753858282 0.87692213 0.10151383 prediction 0.601902356209089 Functional Loss - TCAM1P ENSG00000240280 ncRNA_exonic Human transcribed_unitary_pseudogene chr17:61937573 chr17:61937576 . . 0 24 hm5C_associated_SNPs_54456 0 0 0 0 1 unknown 0.500231642235827 0.500231613774389 0.75384426 5.6922876634502e-08 hm5C_site_49808 DeepMRMD:0.75384426;iRNA_m5C:5.6922876634502e-08 49809 chr20 16729538 16729538 1 + G T UCEC 16729535 + 16729515 16729555 41 CTATTTCTCTGGCTAGTGCTCAAGAAGATTATAATGCCCCG CTATTTCTCTGGCTAGTGCTCAATAAGATTATAATGCCCCG < 41bp 0.857193003743786 0.556242886124994 0.7778424 0.078151286 prediction 0.601900235237584 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16729535 chr20:16729538 stopgain 0.997 1 24 hm5C_associated_SNPs_54457 0 0 0 0 1 unknown 0.500231640070349 0.50023164392698 0.5556848 0 hm5C_site_49809 DeepMRMD:0.5556848;iRNA_m5C:0 49810 chrX 149832069 149832069 1 + G T UCEC 149832067 + 149832047 149832087 41 TACTACATTAGATGGAACCCCAGGATCAAGCAACAAGTAAG TACTACATTAGATGGAACCCCATGATCAAGCAACAAGTAAG < 41bp 0.800942379902582 0.496446748164495 0.3663858 0.12588891 prediction 0.601884759805164 Functional Loss - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149832067 chrX:149832069 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_54458 0 0 0 1 1 Ribosome 0.500231643921163 0.500231643921398 0 0 hm5C_site_49810 DeepMRMD:0;iRNA_m5C:0 49811 chr19 50387551 50387551 1 + G C BLCA 50387550 + 50387530 50387570 41 GACAGGACCAACAAGTTCTACGAGGGTCCCGAGAACCCGGG GACAGGACCAACAAGTTCTACCAGGGTCCCGAGAACCCGGG < 41bp 0.804373548776079 0.503435138270768 0.2408514 0.19905886 prediction 0.601876821010622 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50387550 chr19:50387551 nonsynonymous SNV 0.986 2 22 hm5C_associated_SNPs_54459 0 0 0 2 2 membrane 0.500231643934112 0.500231656908209 0 0 hm5C_site_49811 DeepMRMD:0;iRNA_m5C:0 49812 chr10 88769363 88769363 1 + G T LUSC 88769360 + 88769340 88769380 41 TACCCTGCACTGAGCTGTCCCTGGGCCAGCACCTGCTGCGG TACCCTGCACTGAGCTGTCCCTGTGCCAGCACCTGCTGCGG < 41bp 0.800929759825627 0.442175227868941 0.88658786 0.33539143 prediction 0.601859519651254 Functional Loss - AGAP11 ENSG00000151303;ENSG00000261011;ENSG00000271880 ncRNA_exonic Human other chr10:88769360 chr10:88769363 . . 0 24 hm5C_associated_SNPs_54460 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.77317572 0 hm5C_site_49812 DeepMRMD:0.77317572;iRNA_m5C:0 49813 chr2 238647925 238647925 1 + G T LUAD 238647922 + 238647902 238647942 41 TCCAGCTCCCGCGCCTCCTCCAGGGCCAGCTCGGCCCGGGC TCCAGCTCCCGCGCCTCCTCCAGTGCCAGCTCGGCCCGGGC < 41bp 0.800923938150912 0.4328422034101 0.9262694 0.19306621 prediction 0.601847876301824 Functional Loss - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238647922 chr2:238647925 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_54461 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643917949 0.8525388 6.28741503305719e-12 hm5C_site_49813 DeepMRMD:0.8525388;iRNA_m5C:6.28741503305719e-12 49814 chr2 238647924 238647924 1 + G T UCEC 238647922 + 238647902 238647942 41 TCCAGCTCCCGCGCCTCCTCCAGGGCCAGCTCGGCCCGGGC TCCAGCTCCCGCGCCTCCTCCATGGCCAGCTCGGCCCGGGC < 41bp 0.800923938150912 0.469007412331583 0.9262694 0.32179582 prediction 0.601847876301824 Functional Loss - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238647922 chr2:238647924 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_54462 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643916142 0.8525388 9.90119097821207e-12 hm5C_site_49814 DeepMRMD:0.8525388;iRNA_m5C:9.90119097821207e-12 49815 chr1 46976927 46976927 1 + G T BRCA 46976925 + 46976905 46976945 41 CTGGGGCTGACAGCAAGGGGCTGGGCTGCAAGAGGGGCAGC CTGGGGCTGACAGCAAGGGGCTTGGCTGCAAGAGGGGCAGC < 41bp 0.848890828177799 0.547970238717193 0.61598086 0.34095642 prediction 0.601841178921212 Functional Loss - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976925 chr1:46976927 synonymous SNV . 0 23 hm5C_associated_SNPs_54463 0 0 0 0 1 nucleolus 0.500231643921092 0.500231643921092 0.23196172 0 hm5C_site_49815 DeepMRMD:0.23196172;iRNA_m5C:0 49816 chr5 1245999 1245999 1 + G T LUAD 1245996 + 1245976 1246016 41 CGCGTCAGGAGAAGCTCTACCCGGGCTGGGCGCGCGCCGCC CGCGTCAGGAGAAGCTCTACCCGTGCTGGGCGCGCGCCGCC < 41bp 0.886926981511332 0.586015141666424 0.91466546 0.56388074 prediction 0.601823679689816 Functional Loss - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1245996 chr5:1245999 nonsynonymous SNV 0.164 2 24 hm5C_associated_SNPs_54464 0 0 0 0 1 unknown 0.500231644132497 0.500231648568229 0.70156944 0 hm5C_site_49816 DeepMRMD:0.70156944;iRNA_m5C:0 49817 chr16 71951006 71951006 1 + G T COAD 71951003 + 71950983 71951023 41 TACATTGATCTGGGCTGCTCCTCGACTCCAGTCAGAAGTGG TACATTGATCTGGGCTGCTCCTCTACTCCAGTCAGAAGTGG < 41bp 0.80091042675231 0.451179370902839 0.31846172 0.38107494 prediction 0.601820853504619 Functional Loss - IST1 ENSG00000182149 CDS Human protein_coding chr16:71951003 chr16:71951006 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_54465 0 0 0 0 2 Ribosome 0.500231642339862 0.500231643921091 0 0 hm5C_site_49817 DeepMRMD:0;iRNA_m5C:0 49818 chr11 48346598 48346598 1 + G T COAD 48346596 + 48346576 48346616 41 GGACATACCACAAAATATCACAGAATTTTTCATGCTGGGGC GGACATACCACAAAATATCACATAATTTTTCATGCTGGGGC < 41bp 0.800899844512648 0.490481422926564 0.14149693 0.04870999 prediction 0.601799689025295 Functional Loss - OR4C3 ENSG00000176547 CDS Human protein_coding chr11:48346596 chr11:48346598 stopgain 0.982 0 23 hm5C_associated_SNPs_54466 0 0 0 0 0 exosome 0.500231666844618 0.50023209849492 0 0 hm5C_site_49818 DeepMRMD:0;iRNA_m5C:0 49819 chr12 12618642 12618642 1 + A C STAD 12618638 + 12618618 12618658 41 GTGCCCCTGCTGGACAGGCTCAACAGCATGCTGCCCGAGGG GTGCCCCTGCTGGACAGGCTCAACCGCATGCTGCCCGAGGG < 41bp 0.887598651668096 0.586699626838407 0.19442469 0.10980582 prediction 0.60179804965938 Functional Loss - BORCS5 ENSG00000165714 CDS Human protein_coding chr12:12618638 chr12:12618642 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_54467 0 0 0 0 0 insoluble cytoplasm 0.500231643897238 0.500231643921092 0 0 hm5C_site_49819 DeepMRMD:0;iRNA_m5C:0 49820 chr4 110415841 110415841 1 + A T rs61745402 110415837 + 110415817 110415857 41 TGAACCTGATCCTGCTTCTGCTCCAGCTCCAGCTTCAGCTC TGAACCTGATCCTGCTTCTGCTCCTGCTCCAGCTTCAGCTC < 41bp 0.845586310411256 0.544694347870148 0.41465738 0.14649186 prediction 0.601783925082217 Functional Loss - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110415837 chr4:110415841 synonymous SNV . 0 25 hm5C_associated_SNPs_54468 0 0 1 0 1 Cytosol 0.50023146252497 0.500231637865764 0 0 hm5C_site_49820 DeepMRMD:0;iRNA_m5C:0 49821 chr12 6500019 6500019 1 + G T COAD 6500016 + 6499996 6500036 41 ACACCCCACCAGGAAGATGGCAAGGCTTGGCACCTAGCGGA ACACCCCACCAGGAAGATGGCAATGCTTGGCACCTAGCGGA < 41bp 0.800879664631119 0.433569369749853 0.60341567 0.20591223 prediction 0.601759329262239 Functional Loss - LTBR ENSG00000111321 CDS Human protein_coding chr12:6500016 chr12:6500019 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_54469 0 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0.500231527992208 0.20683134 2.31857770982558e-07 hm5C_site_49821 DeepMRMD:0.20683134;iRNA_m5C:2.31857770982558e-07 Iron status biomarkers (transferrin saturation) 49822 chr6 13592107 13592107 1 + G T UCEC 13592104 + 13592084 13592124 41 CTGCACCGCAAGGCTGGCACCAAGAACCTTCTGGAGATCCA CTGCACCGCAAGGCTGGCACCAATAACCTTCTGGAGATCCA < 41bp 0.800866887283478 0.429852844078965 0.33529449 0.12570566 prediction 0.601733774566955 Functional Loss - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13592104 chr6:13592107 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54470 0 0 1 0 1 Nucleus 0.500470905368631 0.50024842136002 0 0.000444968017221381 hm5C_site_49822 DeepMRMD:0;iRNA_m5C:0.000444968017221381 49823 chr17 63221424 63221424 1 + G T UCEC 63221422 + 63221402 63221442 41 TCCTGGCCTCGCAGCCGGCCCAGGGCCCCTCCTAAGGCCCG TCCTGGCCTCGCAGCCGGCCCATGGCCCCTCCTAAGGCCCG < 41bp 0.861977922854999 0.561116368861724 0.91777384 0.62462574 prediction 0.60172310798655 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63221422 chr17:63221424 nonsynonymous SNV 0.939 0 23 hm5C_associated_SNPs_54471 0 0 0 0 0 exosome 0.500231643921092 0.500231643921089 0.5862962 6.66133814775094e-15 hm5C_site_49823 DeepMRMD:0.5862962;iRNA_m5C:6.66133814775094e-15 49824 chr15 69905125 69905125 1 + G T rs7177691 69905122 + 69905102 69905142 41 CAGCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAA CAGCTGTAATCCCAGCTACTCGGTAGGCTGAGGCAGGAGAA < 41bp 0.845911050487544 0.545057917818115 0.9272063 0.8910564 prediction 0.601706265338858 Functional Loss - PCAT29 ENSG00000259641 ncRNA_exonic Human lincRNA chr15:69905122 chr15:69905125 . . 0 24 hm5C_associated_SNPs_54472 0 0 0 0 0 unknown 0.500231643921092 0.500231643921128 0.0722998000000001 0 hm5C_site_49824 DeepMRMD:0.0722998000000001;iRNA_m5C:0 49825 chr4 100451058 100451058 1 + G T COAD 100451055 + 100451035 100451075 41 TCTTCAGGGATGACAAGTACCAAGAATGATGTGAAAGCAAA TCTTCAGGGATGACAAGTACCAATAATGATGTGAAAGCAAA < 41bp 0.868075446052521 0.567225062974677 0.15088779 0.14091 prediction 0.601700766155686 Functional Loss - C4orf17 ENSG00000138813 CDS Human protein_coding chr4:100451055 chr4:100451058 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_54473 0 0 0 0 2 unknown 0.500231650706423 0.500231643929457 0 1.355393086655e-08 hm5C_site_49825 DeepMRMD:0;iRNA_m5C:1.355393086655e-08 49826 chr17 19316364 19316364 1 + G T HNSC 19316361 + 19316341 19316381 41 TGCCTGAAGCACCCTCTGGCCAGGGACACCCCAGTCTGCCT TGCCTGAAGCACCCTCTGGCCAGTGACACCCCAGTCTGCCT < 41bp 0.800846872872952 0.422516903511353 0.91247475 0.102395475 prediction 0.601693745745903 Functional Loss - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19316361 chr17:19316364 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_54474 0 0 0 0 1 exosome 0.500231643872679 0.500231643908693 0.8249495 0 hm5C_site_49826 DeepMRMD:0.8249495;iRNA_m5C:0 49827 chr2 98264477 98264477 1 + G T SARC 98264475 + 98264455 98264495 41 TTAGGTGAAGAGGACAATACCAGCGTCGTCTGGTTTTGGCT TTAGGTGAAGAGGACAATACCATCGTCGTCTGGTTTTGGCT < 41bp 0.820462917391739 0.519635039118821 0.60819024 0.17551154 prediction 0.601655756545836 Functional Loss - COX5B ENSG00000135940 CDS Human protein_coding chr2:98264475 chr2:98264477 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_54475 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643909321 0.21638048 2.35429453709912e-11 hm5C_site_49827 DeepMRMD:0.21638048;iRNA_m5C:2.35429453709912e-11 49828 chr4 47571036 47571036 1 + G T LUSC 47571034 + 47571014 47571054 41 AGTTTGCCCTGCAAGAAAGTCTGCAAAAGCAGTTCCTGGAA AGTTTGCCCTGCAAGAAAGTCTTCAAAAGCAGTTCCTGGAA < 41bp 0.800820381027296 0.496451341120675 0.51070404 0.90333545 prediction 0.601640762054592 Functional Loss - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47571034 chr4:47571036 synonymous SNV . 0 23 hm5C_associated_SNPs_54476 0 0 0 0 0 exosome 0.500231642422099 0.500231643859146 0 0 hm5C_site_49828 DeepMRMD:0;iRNA_m5C:0 49829 chr19 36120133 36120133 1 + G T LIHC 36120131 + 36120111 36120151 41 CGGGTCCTGGCGCTGGCATCCCGGGCAAAAGCGGCGAGGAA CGGGTCCTGGCGCTGGCATCCCTGGCAAAAGCGGCGAGGAA < 41bp 0.800819482490164 0.476482249427213 0.8856803 0.12789008 prediction 0.601638964980328 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36120131 chr19:36120133 synonymous SNV . 0 23 hm5C_associated_SNPs_54477 0 0 1 0 1 Ribosome 0.500231644449141 0.500231643623355 0.7713606 1.65157199027988e-09 hm5C_site_49829 DeepMRMD:0.7713606;iRNA_m5C:1.65157199027988e-09 49830 chr17 47243571 47243571 1 + G T UCEC 47243568 + 47243548 47243588 41 TTTCTCTTCAACGAGGAGACCAAGATTGAGGTGCTGGTGGA TTTCTCTTCAACGAGGAGACCAATATTGAGGTGCTGGTGGA < 41bp 0.800810243892872 0.422889841305692 0.10095444 0.046796918 prediction 0.601620487785743 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47243568 chr17:47243571 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_54478 0 0 0 0 1 nucleolus 0.500231643921011 0.500231643913847 0 1.43289824450221e-11 hm5C_site_49830 DeepMRMD:0;iRNA_m5C:1.43289824450221e-11 49831 chr2 133175390 133175390 1 + G T THCA 133175388 + 133175368 133175408 41 AAGCCAGAAGGGCTCGCTGGCCGGGGGCACGCGGCCTCCGC AAGCCAGAAGGGCTCGCTGGCCTGGGGCACGCGGCCTCCGC < 41bp 0.800809819285734 0.453521023832334 0.9230045 0.8517474 prediction 0.601619638571468 Functional Loss - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133175388 chr2:133175390 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_54479 0 0 0 0 1 nucleus 0.500231643921092 0.500231643921092 0.1425142 0 hm5C_site_49831 DeepMRMD:0.1425142;iRNA_m5C:0 49832 chr18 10468648 10468648 1 + G T THYM 10468646 + 10468626 10468666 41 CGAGGGCCACTGGGTCTCCACAGGGTAAGAGGACAGGTGGG CGAGGGCCACTGGGTCTCCACATGGTAAGAGGACAGGTGGG < 41bp 0.851914745143351 0.551122242611258 0.85364425 0.2329863 prediction 0.601585005064187 Functional Loss - APCDD1 ENSG00000154856 CDS Human protein_coding chr18:10468646 chr18:10468648 nonsynonymous SNV 0.801 3 23 hm5C_associated_SNPs_54480 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921086 0.7072885 1.22124532708767e-14 hm5C_site_49832 DeepMRMD:0.7072885;iRNA_m5C:1.22124532708767e-14 49833 chrX 72673480 72673480 1 + G T LUAD 72673478 + 72673458 72673498 41 AATCAGAGCTGGCAGTTAACCTGGGCCTTTCCGAGAGACAG AATCAGAGCTGGCAGTTAACCTTGGCCTTTCCGAGAGACAG < 41bp 0.838698064939951 0.537908160009159 0.89933777 0.28942388 prediction 0.601579809861583 Functional Loss - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72673478 chrX:72673480 synonymous SNV . 0 23 hm5C_associated_SNPs_54481 0 0 0 0 1 exosome 0.500231643921124 0.500231643921094 0.79867554 6.12843109593086e-14 hm5C_site_49833 DeepMRMD:0.79867554;iRNA_m5C:6.12843109593086e-14 49834 chr16 30972772 30972772 1 + G T SARC 30972770 + 30972750 30972790 41 CTGGCCCGTGTGCTCTTCACCAGCACTCGGGGCGCCAAGGA CTGGCCCGTGTGCTCTTCACCATCACTCGGGGCGCCAAGGA < 41bp 0.800779297300653 0.473621759067989 0.26526427 0.068265766 prediction 0.601558594601306 Functional Loss - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30972770 chr16:30972772 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54482 0 0 1 0 1 Cytosol 0.500231643921041 0.500228446032168 0 6.39577774785849e-06 hm5C_site_49834 DeepMRMD:0;iRNA_m5C:6.39577774785849e-06 49835 chr12 110960163 110960163 1 + G T PRAD 110960161 + 110960141 110960181 41 TGGAGATGTCAGTGAAGTATCAGAAAGCAGTGTCAGCAACA TGGAGATGTCAGTGAAGTATCATAAAGCAGTGTCAGCAACA < 41bp 0.826378209547909 0.525601572807815 0.5148079 0.08514908 prediction 0.601553273480189 Functional Loss - RAD9B ENSG00000151164 CDS Human protein_coding chr12:110960161 chr12:110960163 stopgain 0.212 0 23 hm5C_associated_SNPs_54483 0 0 0 0 1 exosome 0.500232189015021 0.500231709892334 0.0296158 9.58245375048961e-07 hm5C_site_49835 DeepMRMD:0.0296158;iRNA_m5C:9.58245375048961e-07 49836 chr12 53453529 53453529 1 + G T UCEC 53453527 + 53453507 53453547 41 GGAGAAGCTGGCGCTGCCTACAGCAGCCTTGTATGGACTGC GGAGAAGCTGGCGCTGCCTACATCAGCCTTGTATGGACTGC < 41bp 0.800774559237975 0.475367691064323 0.4947395 0.12700304 prediction 0.60154911847595 Functional Loss - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53453527 chr12:53453529 nonsynonymous SNV 0.689 2 23 hm5C_associated_SNPs_54484 0 0 1 0 0 cytosol 0.500231636152462 0.500260751515043 0 0 hm5C_site_49836 DeepMRMD:0;iRNA_m5C:0 49837 chr12 10217407 10217407 1 + G T SARC 10217405 + 10217385 10217425 41 GGGTTGTCTCAGGATGGACACAGCGGACGCTGGCTTTGGCA GGGTTGTCTCAGGATGGACACATCGGACGCTGGCTTTGGCA < 41bp 0.800768552018028 0.46757569460622 0.84091014 0.18466002 prediction 0.601537104036056 Functional Loss - CLEC9A ENSG00000197992 CDS Human protein_coding chr12:10217405 chr12:10217407 nonsynonymous SNV 0.045 2 23 hm5C_associated_SNPs_54485 0 0 0 0 2 exosome 0.50023165762259 0.500253537967597 0.68182028 0 hm5C_site_49837 DeepMRMD:0.68182028;iRNA_m5C:0 49838 chr11 63960577 63960577 1 + A T LUSC 63960573 + 63960553 63960593 41 AATGAGCTGAAGGAGAAAGGCAACAAGGCCCTGAGCGTGGG AATGAGCTGAAGGAGAAAGGCAACTAGGCCCTGAGCGTGGG < 41bp 0.814242730780968 0.513477458303024 0.04466626 0.03647566 prediction 0.601530544955888 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63960573 chr11:63960577 stopgain 1.000 0 25 hm5C_associated_SNPs_54486 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_49838 DeepMRMD:0;iRNA_m5C:0 49839 chr11 15098972 15098972 1 + G T LUAD 15098970 + 15098950 15098990 41 TCCAAAGCCTTTGGCAGGCGCCGCAGGGACCTTCAAGCCTG TCCAAAGCCTTTGGCAGGCGCCTCAGGGACCTTCAAGCCTG < 41bp 0.813492839177757 0.512735985071017 0.6315541 0.36921966 prediction 0.601513708213482 Functional Loss - CALCB ENSG00000175868 CDS Human protein_coding chr11:15098970 chr11:15098972 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_54487 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.2631082 0 hm5C_site_49839 DeepMRMD:0.2631082;iRNA_m5C:0 49840 chr11 60610100 60610100 1 + A C rs114409171 60610096 + 60610076 60610116 41 CACCAGAGCCTTACCCCGGTCAGCAAGCTCCCGGTCCGGAG CACCAGAGCCTTACCCCGGTCAGCCAGCTCCCGGTCCGGAG < 41bp 0.800750300791728 0.417739761553833 0.2875854 0.13451293 prediction 0.601500601583455 Functional Loss - CCDC86 ENSG00000110104 CDS Human protein_coding chr11:60610096 chr11:60610100 nonsynonymous SNV 0.205 0 25 hm5C_associated_SNPs_54488 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_49840 DeepMRMD:0;iRNA_m5C:0 49841 chr11 60610098 60610098 1 + G T LUAD 60610096 + 60610076 60610116 41 CACCAGAGCCTTACCCCGGTCAGCAAGCTCCCGGTCCGGAG CACCAGAGCCTTACCCCGGTCATCAAGCTCCCGGTCCGGAG < 41bp 0.800750300791728 0.476219214867369 0.2875854 0.21068504 prediction 0.601500601583455 Functional Loss - CCDC86 ENSG00000110104 CDS Human protein_coding chr11:60610096 chr11:60610098 nonsynonymous SNV 0.173 1 23 hm5C_associated_SNPs_54489 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_49841 DeepMRMD:0;iRNA_m5C:0 49842 chr4 71347158 71347158 1 + G T COAD 71347156 + 71347136 71347176 41 ACCATCTTCCTCAGCTCCACCAGAGACCACAGCTGCCCCAC ACCATCTTCCTCAGCTCCACCATAGACCACAGCTGCCCCAC < 41bp 0.800750004138004 0.467071132028477 0.8157544 0.05169967 prediction 0.601500008276008 Functional Loss - MUC7 ENSG00000171195 CDS Human protein_coding chr4:71347156 chr4:71347158 stopgain 0.004 0 23 hm5C_associated_SNPs_54490 0 0 0 0 0 unknown 0.500231643906198 0.500232182828619 0.6315088 0 hm5C_site_49842 DeepMRMD:0.6315088;iRNA_m5C:0 49843 chr9 37732369 37732369 1 + G T LUAD 37732366 + 37732346 37732386 41 TGTAGCTCTGCACTCCGACTCGCGGCTCTGCACATCCAGGA TGTAGCTCTGCACTCCGACTCGCTGCTCTGCACATCCAGGA < 41bp 0.800742859406868 0.422171578952669 0.38781002 0.0650619 prediction 0.601485718813737 Functional Loss - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37732366 chr9:37732369 synonymous SNV . 0 24 hm5C_associated_SNPs_54491 0 0 0 0 1 exosome 0.50023164392155 0.500231651519603 0 0 hm5C_site_49843 DeepMRMD:0;iRNA_m5C:0 49844 chr7 141763343 141763343 1 + A T LUAD 141763339 + 141763319 141763359 41 CTTCGTGAATGGGGCAGTTTCTCCAGGCTGCAGGGACGCCT CTTCGTGAATGGGGCAGTTTCTCCTGGCTGCAGGGACGCCT < 41bp 0.834470812975219 0.533729693735194 0.9585359 0.3191453 prediction 0.60148223848005 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141763339 chr7:141763343 synonymous SNV . 0 25 hm5C_associated_SNPs_54492 0 0 0 0 2 Cytosol 0.500231643497773 0.500231643125088 0.9170718 7.45368877730357e-10 hm5C_site_49844 DeepMRMD:0.9170718;iRNA_m5C:7.45368877730357e-10 49845 chr16 27460197 27460197 1 + C A GBM 27460200 - 27460180 27460220 41 GCTGGGCTCCAGGCCAGCATCCAGGTCCAGGGCTGGGTAGC GCTGGGCTCCAGGCCAGCATCCATGTCCAGGGCTGGGTAGC < 41bp 0.800735160256354 0.415666012159299 0.8845092 0.3645795 prediction 0.601470320512709 Functional Loss - IL21R ENSG00000103522 CDS Human protein_coding chr16:27460200 chr16:27460197 nonsynonymous SNV 0.921 3 24 hm5C_associated_SNPs_54493 0 0 0 0 0 nucleus 0.500231643841474 0.500231643659921 0.7690184 3.63105989720225e-10 hm5C_site_49845 DeepMRMD:0.7690184;iRNA_m5C:3.63105989720225e-10 49846 chr20 37272390 37272390 1 + A T rs115554363 37272386 + 37272366 37272406 41 GGAAGGTGGTGGCCCGGGAACAGCACAACAAGATGACTCTG GGAAGGTGGTGGCCCGGGAACAGCTCAACAAGATGACTCTG < 41bp 0.824079389547461 0.52336410453759 0.5736794 0.3546179 prediction 0.601430570019741 Functional Loss - ARHGAP40 ENSG00000124143 CDS Human protein_coding chr20:37272386 chr20:37272390 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_54494 0 0 0 0 1 cytosol 0.500231644926222 0.50023164401659 0.1473588 1.81926340658833e-09 hm5C_site_49846 DeepMRMD:0.1473588;iRNA_m5C:1.81926340658833e-09 49847 chr11 61250258 61250258 1 + G T rs575487688 61250255 + 61250235 61250275 41 AGGCTATGGGCGGGAGAAGCCCAGTGCGGGTCCCCCCACCA AGGCTATGGGCGGGAGAAGCCCATTGCGGGTCCCCCCACCA < 41bp 0.800714473437447 0.421139312240563 0.38566378 0.26456824 prediction 0.601428946874895 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61250255 chr11:61250258 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_54495 0 0 0 0 1 exosome 0.500231643921088 0.500231643921092 0 0 hm5C_site_49847 DeepMRMD:0;iRNA_m5C:0 49848 chr3 16343274 16343274 1 + G T UCEC 16343272 + 16343252 16343292 41 GCTTTCCATCCTGCGGCACGCAGCAGATCTCCTCAGAGAGC GCTTTCCATCCTGCGGCACGCATCAGATCTCCTCAGAGAGC < 41bp 0.817226950117627 0.516518797048962 0.82622284 0.059611678 prediction 0.601416306137329 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16343272 chr3:16343274 nonsynonymous SNV 0.049 3 23 hm5C_associated_SNPs_54496 0 0 1 0 0 Ribosome 0.500231643921088 0.500126232943013 0.65244568 0.000210821956151408 hm5C_site_49848 DeepMRMD:0.65244568;iRNA_m5C:0.000210821956151408 49849 chr1 26509747 26509747 1 + G T ACC 26509745 + 26509725 26509765 41 TTGTGTCCCAAGTGGACACCCAGGTGAGAGCCCCACACCCT TTGTGTCCCAAGTGGACACCCATGTGAGAGCCCCACACCCT < 41bp 0.800706654266581 0.462954833420878 0.9363524 0.4748902 prediction 0.601413308533162 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26509745 chr1:26509747 nonsynonymous SNV 0.693 2 23 hm5C_associated_SNPs_54497 0 0 0 0 2 Cytosol 0.500231643914892 0.50023164393288 0.8727048 0 hm5C_site_49849 DeepMRMD:0.8727048;iRNA_m5C:0 49850 chr15 41763442 41763442 1 + G T CESC 41763440 + 41763420 41763460 41 TGAATCGGGTTCGATTATCACGGCATAAGCTAGAACGCTGG TGAATCGGGTTCGATTATCACGTCATAAGCTAGAACGCTGG < 41bp 0.800705191305834 0.484432639917021 0.88183236 0.44524357 prediction 0.601410382611668 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41763440 chr15:41763442 synonymous SNV . 0 23 hm5C_associated_SNPs_54498 0 0 1 0 1 Cytosol 0.500231643921104 0.500231643921108 0.76366472 0 hm5C_site_49850 DeepMRMD:0.76366472;iRNA_m5C:0 49851 chr11 63974949 63974949 1 + G T LUAD 63974946 + 63974926 63974966 41 GTCGGTCACCCTGCGGGTCACTGGGGAGTCGCACATCGGCG GTCGGTCACCCTGCGGGTCACTGTGGAGTCGCACATCGGCG < 41bp 0.893746427674638 0.593042357448152 0.8925744 0.19759667 prediction 0.60140814045297 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63974946 chr11:63974949 nonsynonymous SNV 0.978 2 24 hm5C_associated_SNPs_54499 0 0 0 0 1 Cytosol 0.500231643415974 0.50023060140826 0.7851488 2.08401542911574e-06 hm5C_site_49851 DeepMRMD:0.7851488;iRNA_m5C:2.08401542911574e-06 49852 chr11 120983866 120983866 1 + G T LUAD 120983863 + 120983843 120983883 41 TTACGAAATCAACTGGACCACGGGGACGGCGAGTGGCGGCG TTACGAAATCAACTGGACCACGGTGACGGCGAGTGGCGGCG < 41bp 0.800698818918197 0.415698589381253 0.8738527 0.33877075 prediction 0.601397637836393 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:120983863 chr11:120983866 nonsynonymous SNV 0.051 4 24 hm5C_associated_SNPs_54500 0 0 0 0 2 exosome 0.500231599560502 0.500231643921093 0.7477054 0 hm5C_site_49852 DeepMRMD:0.7477054;iRNA_m5C:0 49853 chr12 53453566 53453566 1 + G T LUSC 53453563 + 53453543 53453583 41 ACTGCGGCTGGAGAGGGAGGCTGGAGAAGGGTGGGCAAGTG ACTGCGGCTGGAGAGGGAGGCTGTAGAAGGGTGGGCAAGTG < 41bp 0.876734557900231 0.576037889331121 0.89882666 0.66249585 prediction 0.601393337138221 Functional Loss - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53453563 chr12:53453566 nonsynonymous SNV 0.085 2 24 hm5C_associated_SNPs_54501 0 0 1 0 0 cytosol 0.500231642508899 0.500231643834518 0.47266162 0 hm5C_site_49853 DeepMRMD:0.47266162;iRNA_m5C:0 49854 chr4 41984395 41984395 1 + G T SARC 41984392 + 41984372 41984412 41 GTGCGTGGTCCCTCAACACCCGGGCATATCACTGCTTTAGT GTGCGTGGTCCCTCAACACCCGGTCATATCACTGCTTTAGT < 41bp 0.800688438812723 0.431968880828534 0.8924937 0.19743186 prediction 0.601376877625445 Functional Loss - DCAF4L1 ENSG00000182308 CDS Human protein_coding chr4:41984392 chr4:41984395 nonsynonymous SNV 0.066 1 24 hm5C_associated_SNPs_54502 0 0 0 0 0 Nucleus 0.500231643921034 0.500231643921082 0.7849874 0 hm5C_site_49854 DeepMRMD:0.7849874;iRNA_m5C:0 49855 chrX 70824081 70824081 1 + G T UCEC 70824078 + 70824058 70824098 41 GATTCGGATGTTCCCGAAGACAAGAGTGATGATTCGGATGT GATTCGGATGTTCCCGAAGACAATAGTGATGATTCGGATGT < 41bp 0.883530007262266 0.582842455299821 0.42154804 0.20426965 prediction 0.601375103924891 Functional Loss - GCNA ENSG00000147174 CDS Human protein_coding chrX:70824078 chrX:70824081 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_54503 0 0 0 0 0 unknown 0.500231652372346 0.500232421500587 0 0 hm5C_site_49855 DeepMRMD:0;iRNA_m5C:0 49856 chr14 67567588 67567588 1 + G T LIHC 67567585 + 67567565 67567605 41 TCTCACAGCTGCTGATGGCCCAGGAGATCGTTTCATCATTG TCTCACAGCTGCTGATGGCCCAGTAGATCGTTTCATCATTG < 41bp 0.80068718605291 0.486489872388889 0.8332281 0.13520998 prediction 0.60137437210582 Functional Loss - GPHN ENSG00000171723 CDS Human protein_coding chr14:67567585 chr14:67567588 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_54504 0 0 0 0 2 chromatin 0.500231643886276 0.500231643921077 0.6664562 0 hm5C_site_49856 DeepMRMD:0.6664562;iRNA_m5C:0 49857 chr7 156468398 156468398 1 + A C STAD 156468394 + 156468374 156468414 41 CCCGCCTCCTCCTCAGTTCACAGAAATCAGCCACCGCATCC CCCGCCTCCTCCTCAGTTCACAGACATCAGCCACCGCATCC < 41bp 0.800680548836866 0.446036859159141 0.11793518 0.06789109 prediction 0.601361097673732 Functional Loss - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156468394 chr7:156468398 nonsynonymous SNV 0.971 2 25 hm5C_associated_SNPs_54505 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921096 0 0 hm5C_site_49857 DeepMRMD:0;iRNA_m5C:0 49858 chr16 90160912 90160912 1 + G T LUAD 90160909 + 90160889 90160929 41 CCTGGGAACGCGGCCCTCCCCTCGCTCATGCCCTCCCGCCC CCTGGGAACGCGGCCCTCCCCTCTCTCATGCCCTCCCGCCC < 41bp 0.800677703361156 0.449369988096991 0.74075687 0.3238719 prediction 0.601355406722313 Functional Loss - PRDM7;FAM157B ENSG00000261812 intronic Human transcribed_unprocessed_pseudogene chr16:90160909 chr16:90160912 . . 0 24 hm5C_associated_SNPs_54506 0 0 0 0 1 unknown 0.500231588446803 0.500165979864889 0.48151374 0.000131217163827912 hm5C_site_49858 DeepMRMD:0.48151374;iRNA_m5C:0.000131217163827912 49859 chr7 37780229 37780229 1 + G T UCEC 37780226 + 37780206 37780246 41 TTTCGCTTGACCTACCTCATCAAGAAGACTTGGATGTTTGG TTTCGCTTGACCTACCTCATCAATAAGACTTGGATGTTTGG < 41bp 0.800675251186927 0.435160298193948 0.82880676 0.18597025 prediction 0.601350502373854 Functional Loss - GPR141 ENSG00000187037 CDS Human protein_coding chr7:37780226 chr7:37780229 nonsynonymous SNV 0.392 0 24 hm5C_associated_SNPs_54507 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.65761352 0 hm5C_site_49859 DeepMRMD:0.65761352;iRNA_m5C:0 49860 chr2 113940668 113940668 1 + G T STAD 113940665 + 113940645 113940685 41 CCCACCTGAGAATGAAGACTCAGGGGAAGACAGCAGTGAGC CCCACCTGAGAATGAAGACTCAGTGGAAGACAGCAGTGAGC < 41bp 0.800656996957363 0.454155852471084 0.91598606 0.5408411 prediction 0.601313993914726 Functional Loss - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113940665 chr2:113940668 nonsynonymous SNV 0.036 1 24 hm5C_associated_SNPs_54508 0 0 1 0 0 chromatin 0.500231643921093 0.500231645080176 0.75028992 0 hm5C_site_49860 DeepMRMD:0.75028992;iRNA_m5C:0 49861 chr1 156339067 156339067 1 + G T LUAD 156339064 + 156339044 156339084 41 GCCGGGTCTCCTAGCCGCGCCGCGGGCCGGCGACTGCAGCT GCCGGGTCTCCTAGCCGCGCCGCTGGCCGGCGACTGCAGCT < 41bp 0.800640258212125 0.441931306784025 0.5401193 0.24113122 prediction 0.601280516424251 Functional Loss - RHBG ENSG00000132677 CDS Human protein_coding chr1:156339064 chr1:156339067 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_54509 0 0 1 0 0 Cytosol 0.500195794711733 0.500231700374421 0.0802385999999999 0 hm5C_site_49861 DeepMRMD:0.0802385999999999;iRNA_m5C:0 49862 chr12 10168296 10168296 1 + G T LUAD 10168294 + 10168274 10168314 41 TCCTCTGGCAGAAGTTGGTTCTGGGAAGATGGCTCTGTTCC TCCTCTGGCAGAAGTTGGTTCTTGGAAGATGGCTCTGTTCC < 41bp 0.809655965813314 0.509024338691725 0.9344727 0.917603 prediction 0.601263254243179 Functional Loss - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10168294 chr12:10168296 nonsynonymous SNV 0.949 2 23 hm5C_associated_SNPs_54510 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.0337394000000002 0 hm5C_site_49862 DeepMRMD:0.0337394000000002;iRNA_m5C:0 49863 chr1 179632616 179632616 1 + G T UCEC 179632614 + 179632594 179632634 41 GAAAAAAATACTGGCACAAACAGGACTCAAAAGGTAAATGT GAAAAAAATACTGGCACAAACATGACTCAAAAGGTAAATGT < 41bp 0.800629330079266 0.485788831684089 0.7630489 0.25759664 prediction 0.601258660158531 Functional Loss - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179632614 chr1:179632616 nonsynonymous SNV 0.078 0 23 hm5C_associated_SNPs_54511 0 0 0 0 1 cytosol 0.50023166233738 0.50023158551074 0.5260978 1.53653280765553e-07 hm5C_site_49863 DeepMRMD:0.5260978;iRNA_m5C:1.53653280765553e-07 49864 chr19 15839675 15839675 1 + G T BLCA 15839673 + 15839653 15839693 41 ACTCTCAGGAGGGTGACACCCTGATGGCCACCACCTACGCA ACTCTCAGGAGGGTGACACCCTTATGGCCACCACCTACGCA < 41bp 0.830062422572429 0.529435347448429 0.18975046 0.08645296 prediction 0.601254150248001 Functional Loss - OR10H2 ENSG00000171942 CDS Human protein_coding chr19:15839673 chr19:15839675 synonymous SNV . 0 23 hm5C_associated_SNPs_54512 0 0 0 0 0 unknown 0.50023164392109 0.500231643921092 0 0 hm5C_site_49864 DeepMRMD:0;iRNA_m5C:0 49865 chr17 9631601 9631601 1 + G T ACC 9631599 + 9631579 9631619 41 GCCATTGAAAGAGGTCCAGCCGGGGTGCCCTGTCCCTCGGC GCCATTGAAAGAGGTCCAGCCGTGGTGCCCTGTCCCTCGGC < 41bp 0.835978425133531 0.535381658261142 0.9333123 0.8723511 prediction 0.601193533744776 Functional Loss - USP43 ENSG00000154914 CDS Human protein_coding chr17:9631599 chr17:9631601 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_54513 0 0 0 0 0 cytosol 0.500231587777155 0.500231531862523 0.1219224 1.11829263182983e-07 hm5C_site_49865 DeepMRMD:0.1219224;iRNA_m5C:1.11829263182983e-07 49866 chr16 90110158 90110158 1 + C A COAD 90110160 - 90110140 90110180 41 CCCACTGGGCAGCTGTGACTCAGGTGTCAATGAAGTTAGTG CCCACTGGGCAGCTGTGACTCATGTGTCAATGAAGTTAGTG < 41bp 0.832652040661066 0.532057350906714 0.90968275 0.22574136 prediction 0.601189379508706 Functional Loss - URAHP ENSG00000222019 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:90110160 chr16:90110158 . . 0 23 hm5C_associated_SNPs_54514 0 0 0 0 0 unknown 0.500231643918813 0.500231643858424 0.8193655 1.20776944001477e-10 hm5C_site_49866 DeepMRMD:0.8193655;iRNA_m5C:1.20776944001477e-10 49867 chr11 65123867 65123867 1 + G T COAD 65123865 + 65123845 65123885 41 TTGGTGCATGTGATCAAGTACAGGTGCTGCTGTGTGCCAAC TTGGTGCATGTGATCAAGTACATGTGCTGCTGTGTGCCAAC < 41bp 0.800582639496843 0.469396840377729 0.806204 0.2231926 prediction 0.601165278993686 Functional Loss - TIGD3 ENSG00000173825 CDS Human protein_coding chr11:65123865 chr11:65123867 nonsynonymous SNV 0.809 1 23 hm5C_associated_SNPs_54515 0 0 0 0 0 Endoplasmic reticulum 0.500231379465118 0.500231867460682 0.612408 0 hm5C_site_49867 DeepMRMD:0.612408;iRNA_m5C:0 49868 chr2 48701891 48701891 1 + G T UCEC 48701889 + 48701869 48701909 41 CCAGGAATCTAGAGCTGTCCCAGGACATGAAAAAAATGACA CCAGGAATCTAGAGCTGTCCCATGACATGAAAAAAATGACA < 41bp 0.820741622828595 0.520176752802959 0.4539345 0.15295663 prediction 0.601129740051272 Functional Loss - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48701889 chr2:48701891 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_54516 0 0 1 0 2 Cytosol 0.500231643921092 0.50023164392116 0 0 hm5C_site_49868 DeepMRMD:0;iRNA_m5C:0 49869 chr5 6746493 6746493 1 + G T SARC 6746491 + 6746471 6746511 41 GAGATCATGAAAGCCATGACCAGCGGGTACAGACCGTCGAT GAGATCATGAAAGCCATGACCATCGGGTACAGACCGTCGAT < 41bp 0.838936233071612 0.538389630963977 0.8512019 0.25440386 prediction 0.60109320421527 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6746491 chr5:6746493 nonsynonymous SNV 0.976 2 23 hm5C_associated_SNPs_54517 0 0 1 0 1 Nucleus 0.50023168341503 0.500230713805122 0.7024038 1.9392198160606e-06 hm5C_site_49869 DeepMRMD:0.7024038;iRNA_m5C:1.9392198160606e-06 49870 chrX 89177383 89177383 1 + G T LUAD 89177381 + 89177361 89177401 41 TCTTTGTTGCAGATTTCTAACTGGTTTATCAATGCTCGCAG TCTTTGTTGCAGATTTCTAACTTGTTTATCAATGCTCGCAG < 41bp 0.821486594984516 0.520941911202287 0.16109106 0.047015607 prediction 0.601089367564459 Functional Loss - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177381 chrX:89177383 nonsynonymous SNV 0.719 4 23 hm5C_associated_SNPs_54518 0 0 0 0 0 exosome 0.500231602998593 0.500231631085244 0 0 hm5C_site_49870 DeepMRMD:0;iRNA_m5C:0 49871 chr19 51359636 51359636 1 + G T KIRP 51359634 + 51359614 51359654 41 GCACCCCCAGTGGGTCCTCACAGCTGCCCACTGCATCAGGA GCACCCCCAGTGGGTCCTCACATCTGCCCACTGCATCAGGA < 41bp 0.800533092652631 0.457911370530787 0.44782978 0.2935732 prediction 0.601066185305262 Functional Loss - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51359634 chr19:51359636 nonsynonymous SNV 0.986 2 23 hm5C_associated_SNPs_54519 0 0 0 0 1 Cytosol 0.500231643921095 0.500231643921093 0 4.44089209850063e-15 hm5C_site_49871 DeepMRMD:0;iRNA_m5C:4.44089209850063e-15 49872 chrX 102840581 102840581 1 + G T SARC 102840579 + 102840559 102840599 41 GTGCGGGCCTTCCACGCTGCCAGCGGAACACTGGAATGGCG GTGCGGGCCTTCCACGCTGCCATCGGAACACTGGAATGGCG < 41bp 0.803586511501304 0.503070220544105 0.85198 0.43327382 prediction 0.601032581914397 Functional Loss - TCEAL4 ENSG00000133142 CDS Human protein_coding chrX:102840579 chrX:102840581 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_54520 0 0 1 0 1 Ribosome 0.50023170165316 0.500259755925536 0.70396 0 hm5C_site_49872 DeepMRMD:0.70396;iRNA_m5C:0 49873 chr1 248512336 248512336 1 + G T UCEC 248512334 + 248512314 248512354 41 TGTGTCAATTCCCTACTGGACAGCACCACCATTTCTAAGGC TGTGTCAATTCCCTACTGGACATCACCACCATTTCTAAGGC < 41bp 0.824116549093726 0.523617901643777 0.043946266 0.03177902 prediction 0.600997294899899 Functional Loss - OR14C36 ENSG00000177174 CDS Human protein_coding chr1:248512334 chr1:248512336 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_54521 0 0 0 0 0 unknown 0.500231530476178 0.500231642070196 0 0 hm5C_site_49873 DeepMRMD:0;iRNA_m5C:0 49874 chr12 250336 250336 1 + C A LUSC 250339 - 250319 250359 41 GGCCACACCGATGGGGGTGTCCGGGATGAAGCCGCGTGAGA GGCCACACCGATGGGGGTGTCCGTGATGAAGCCGCGTGAGA < 41bp 0.800488792894592 0.413925150176968 0.8821982 0.4340829 prediction 0.600977585789184 Functional Loss - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:250339 chr12:250336 nonsynonymous SNV 0.854 2 24 hm5C_associated_SNPs_54522 0 0 0 0 1 nucleolus 0.500234454362934 0.500232916911345 0.7643964 3.07490317696946e-06 hm5C_site_49874 DeepMRMD:0.7643964;iRNA_m5C:3.07490317696946e-06 49875 chr22 18029098 18029098 1 + A T UCEC 18029094 + 18029074 18029114 41 CTGTGGCTGCCCTCCCACCTCACCACCCAGGGGCCACCCAG CTGTGGCTGCCCTCCCACCTCACCTCCCAGGGGCCACCCAG < 41bp 0.831396433477363 0.530916778875355 0.22344604 0.10468966 prediction 0.600959309204017 Functional Loss - CECR2 ENSG00000099954 CDS Human protein_coding chr22:18029094 chr22:18029098 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_54523 0 0 0 0 0 nucleoplasm 0.50023164392213 0.500231643921099 0 2.06212824593877e-12 hm5C_site_49875 DeepMRMD:0;iRNA_m5C:2.06212824593877e-12 49876 chr1 148932888 148932888 1 + G T HNSC 148932885 + 148932865 148932905 41 GGTGGGAGACGGGTGAGGTACAGGCTCAGTCTGCGGCCAAG GGTGGGAGACGGGTGAGGTACAGTCTCAGTCTGCGGCCAAG < 41bp 0.886809670392722 0.586334668269558 0.7009043 0.20457762 prediction 0.600950004246327 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932885 chr1:148932888 . . 0 24 hm5C_associated_SNPs_54524 0 0 0 1 1 unknown 0.500231478543617 0.500231642280609 0.4018086 0 hm5C_site_49876 DeepMRMD:0.4018086;iRNA_m5C:0 49877 chr19 36603843 36603843 1 + A T rs149534478 36603839 + 36603819 36603859 41 GCTTTCATGACGCCTTCGATCTCAAGCGCCACATGAGGACT GCTTTCATGACGCCTTCGATCTCATGCGCCACATGAGGACT < 41bp 0.831830584432154 0.53137524698089 0.05094701 0.064620525 prediction 0.600910674902527 Functional Loss - OVOL3 ENSG00000105261 CDS Human protein_coding chr19:36603839 chr19:36603843 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_54525 0 0 1 0 1 nucleus 0.500231644087364 0.500235848737441 0 0 hm5C_site_49877 DeepMRMD:0;iRNA_m5C:0 49878 chr11 55587273 55587273 1 + G T UCEC 55587271 + 55587251 55587291 41 TCATCAAAATCAACCCCAAACTGCATACCCCCATGTACTTT TCATCAAAATCAACCCCAAACTTCATACCCCCATGTACTTT < 41bp 0.805378006121129 0.504941643944345 0.052226126 0.05901128 prediction 0.600872724353568 Functional Loss - OR5D18 ENSG00000186119 CDS Human protein_coding chr11:55587271 chr11:55587273 synonymous SNV . 0 23 hm5C_associated_SNPs_54526 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_49878 DeepMRMD:0;iRNA_m5C:0 49879 chrX 30268940 30268940 1 + G T LUAD 30268937 + 30268917 30268957 41 TCAGTCAAAGATCCTGTAGCCTGGGAGGCAGGAATGCTGAT TCAGTCAAAGATCCTGTAGCCTGTGAGGCAGGAATGCTGAT < 41bp 0.800423464192646 0.432233673868792 0.70917517 0.06782809 prediction 0.600846928385292 Functional Loss - MAGEB1 ENSG00000214107 CDS Human protein_coding chrX:30268937 chrX:30268940 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_54527 0 0 0 0 0 nucleolus 0.500231643879619 0.500231643909253 0.41835034 0 hm5C_site_49879 DeepMRMD:0.41835034;iRNA_m5C:0 49880 chr4 56230408 56230408 1 + C A UCEC 56230410 - 56230390 56230430 41 CCATCCATTGGCACTTGGCTCAGCACAGTTAGGCCAACAAG CCATCCATTGGCACTTGGCTCATCACAGTTAGGCCAACAAG < 41bp 0.825753660971353 0.525330782110892 0.1663639 0.05635953 prediction 0.600845757720921 Functional Loss - SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56230410 chr4:56230408 nonsynonymous SNV 0.974 4 23 hm5C_associated_SNPs_54528 0 0 0 0 0 Ribosome 0.500231645989473 0.500231643922625 0 4.13369716234513e-09 hm5C_site_49880 DeepMRMD:0;iRNA_m5C:4.13369716234513e-09 49881 chr2 28820876 28820876 1 + G T ESCA 28820874 + 28820854 28820894 41 CTTGCTCACTCCCTACAGTGCAGGAGGGGACGGCTCCCTGG CTTGCTCACTCCCTACAGTGCATGAGGGGACGGCTCCCTGG < 41bp 0.800402819964844 0.477587057217353 0.70897704 0.15415841 prediction 0.600805639929687 Functional Loss - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28820874 chr2:28820876 stopgain 0.144 1 23 hm5C_associated_SNPs_54529 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.41795408 0 hm5C_site_49881 DeepMRMD:0.41795408;iRNA_m5C:0 49882 chr3 40223855 40223855 1 + G T LUAD 40223852 + 40223832 40223872 41 GCTGGAAGAGTGTGGACAGGCTGGATGAAACAAGTAACTGT GCTGGAAGAGTGTGGACAGGCTGTATGAAACAAGTAACTGT < 41bp 0.851605457230577 0.551205638381329 0.19029313 0.08812937 prediction 0.600799637698496 Functional Loss - MYRIP ENSG00000170011 CDS Human protein_coding chr3:40223852 chr3:40223855 nonsynonymous SNV 0.823 1 24 hm5C_associated_SNPs_54530 0 0 0 0 1 chromatin 0.500231645263202 0.500231643933544 0 2.6593156565724e-09 hm5C_site_49882 DeepMRMD:0;iRNA_m5C:2.6593156565724e-09 49883 chr6 134210769 134210769 1 + G T STAD 134210767 + 134210747 134210787 41 GGGTCAGCCAGGAGGGGAAGCAGGTCCAGCGCAACGCCGCC GGGTCAGCCAGGAGGGGAAGCATGTCCAGCGCAACGCCGCC < 41bp 0.863283266483575 0.562891904038007 0.89762324 0.27607995 prediction 0.600782724891135 Functional Loss - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134210767 chr6:134210769 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_54531 0 0 0 0 0 exosome 0.500231643921092 0.500231643921096 0.79524648 0 hm5C_site_49883 DeepMRMD:0.79524648;iRNA_m5C:0 49884 chr1 196927185 196927185 1 + G T rs41257904 196927183 + 196927163 196927203 41 ATGTAGAAACGGACAATGGTCAGAACCACCAAAATGCTTAG ATGTAGAAACGGACAATGGTCATAACCACCAAAATGCTTAG < 41bp 0.800386338389032 0.495335483167573 0.22499165 0.042687684 prediction 0.600772676778063 Functional Loss - CFHR2 ENSG00000080910 CDS Human protein_coding chr1:196927183 chr1:196927185 stopgain 0.793 0 23 hm5C_associated_SNPs_54532 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_49884 DeepMRMD:0;iRNA_m5C:0 49885 chr19 56565087 56565087 1 + A T COAD 56565083 + 56565063 56565103 41 GGAGCAGACACCTGAAGAGCCTGGATCTCACGGACAATGCC GGAGCAGACACCTGAAGAGCCTGGTTCTCACGGACAATGCC < 41bp 0.800374369865979 0.496258741472461 0.35574377 0.19665429 prediction 0.600748739731957 Functional Loss - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56565083 chr19:56565087 nonsynonymous SNV 0.010 3 25 hm5C_associated_SNPs_54533 0 0 0 0 2 unknown 0.500304831131354 0.500309127840106 0 0 hm5C_site_49885 DeepMRMD:0;iRNA_m5C:0 49886 chr19 41223227 41223227 1 + G T HNSC 41223225 + 41223205 41223245 41 GGGCGGGCCCTGGGCCCGGACAGAGGGGTCCAGCCTCCACA GGGCGGGCCCTGGGCCCGGACATAGGGGTCCAGCCTCCACA < 41bp 0.822459021374584 0.522087693496956 0.8799058 0.7672608 prediction 0.600742655755256 Functional Loss - ITPKC ENSG00000086544 CDS Human protein_coding chr19:41223225 chr19:41223227 stopgain 0.122 0 23 hm5C_associated_SNPs_54534 0 0 0 0 0 Cytosol 0.500231643920497 0.500231643920859 0.22529 0 hm5C_site_49886 DeepMRMD:0.22529;iRNA_m5C:0 49887 chr1 32829207 32829207 1 + A C rs145737246 32829203 + 32829183 32829223 41 CTTACTTCCTCAGAGTTTATCCAGAGATTCCTCCCTCGGGA CTTACTTCCTCAGAGTTTATCCAGCGATTCCTCCCTCGGGA < 41bp 0.800369532571398 0.430354320168143 0.92025435 0.7797176 prediction 0.600739065142796 Functional Loss - TSSK3 ENSG00000162526 CDS Human protein_coding chr1:32829203 chr1:32829207 synonymous SNV . 0 25 hm5C_associated_SNPs_54535 0 0 0 0 0 chromatin 0.500231643878507 0.500231643920551 0.2810735 0 hm5C_site_49887 DeepMRMD:0.2810735;iRNA_m5C:0 49888 chr2 181927579 181927579 1 + G T LUAD 181927576 + 181927556 181927596 41 ACCAACAGAGCAGAACACGACAGGATAGCCAGACAGTGGAC ACCAACAGAGCAGAACACGACAGTATAGCCAGACAGTGGAC < 41bp 0.871082975282909 0.570723236161976 0.7871294 0.2371887 prediction 0.600719478241866 Functional Loss - UBE2E3 ENSG00000170035 CDS Human protein_coding chr2:181927576 chr2:181927579 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54536 0 0 1 0 1 Cytosol 0.500446623302338 0.500239519455142 0.5742588 0.00041420769439382 hm5C_site_49888 DeepMRMD:0.5742588;iRNA_m5C:0.00041420769439382 49889 chr11 116701533 116701533 1 + G T LUAD 116701530 + 116701510 116701550 41 CCTCCCTTCTCAGCTTCATGCAGGGTTACATGAAGCACGCC CCTCCCTTCTCAGCTTCATGCAGTGTTACATGAAGCACGCC < 41bp 0.892962401298158 0.592623939720311 0.8693702 0.15133402 prediction 0.600676923155693 Functional Loss - APOC3 ENSG00000110245 CDS Human protein_coding chr11:116701530 chr11:116701533 nonsynonymous SNV 0.168 3 24 hm5C_associated_SNPs_54537 0 0 1 0 2 exosome 0.500231643858984 0.500231664212944 0.7387404 0 hm5C_site_49889 DeepMRMD:0.7387404;iRNA_m5C:0 49890 chr7 156752834 156752834 1 + G T SARC 156752832 + 156752812 156752852 41 ACTGAAGCCCAGACCAAAGCCAGCGGGGCAGGCAGCGAGTT ACTGAAGCCCAGACCAAAGCCATCGGGGCAGGCAGCGAGTT < 41bp 0.800323784536237 0.478986943022796 0.6011096 0.1540086 prediction 0.600647569072473 Functional Loss - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156752832 chr7:156752834 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_54538 0 0 1 0 0 Nucleus 0.50023164390064 0.500231643696863 0.2022192 4.07555100778723e-10 hm5C_site_49890 DeepMRMD:0.2022192;iRNA_m5C:4.07555100778723e-10 49891 chr1 192545461 192545461 1 + G T LUAD 192545458 + 192545438 192545478 41 TGAGATCTATGATCCCACATCTGGAATCTGGAATGAAATCT TGAGATCTATGATCCCACATCTGTAATCTGGAATGAAATCT < 41bp 0.854368410680056 0.554056499466383 0.16860706 0.13125536 prediction 0.600623822427346 Functional Loss - RGS1 ENSG00000090104 CDS Human protein_coding chr1:192545458 chr1:192545461 stopgain 0.999 0 24 hm5C_associated_SNPs_54539 0 0 0 0 2 exosome 0.500231609517187 0.500231643644855 0 0 hm5C_site_49891 DeepMRMD:0;iRNA_m5C:0 49892 chr11 47587496 47587496 1 + G T UCEC 47587493 + 47587473 47587513 41 AACGTGCGCGGGGTGATCACCATGAACGAGGAGTACGAGAC AACGTGCGCGGGGTGATCACCATTAACGAGGAGTACGAGAC < 41bp 0.800301810825519 0.464119724542886 0.315131 0.045040876 prediction 0.600603621651039 Functional Loss - PTPMT1 ENSG00000110536 CDS Human protein_coding chr11:47587493 chr11:47587496 stopgain 1.000 1 24 hm5C_associated_SNPs_54540 0 0 1 0 2 Ribosome 0.500231691993877 0.500231869621 0 0 hm5C_site_49892 DeepMRMD:0;iRNA_m5C:0 49893 chr6 31675821 31675821 1 + G T LUAD 31675819 + 31675799 31675839 41 TGCCCTGCTCTTGGTGTGTCCTGGGGAGGGGCTTTCTGAGC TGCCCTGCTCTTGGTGTGTCCTTGGGAGGGGCTTTCTGAGC < 41bp 0.800285923330574 0.489784622274004 0.89726365 0.6663308 prediction 0.600571846661149 Functional Loss - LY6G6F ENSG00000204424;ENSG00000250641 CDS Human other chr6:31675819 chr6:31675821 nonsynonymous SNV 0.518 2 23 hm5C_associated_SNPs_54541 0 0 0 0 1 Endoplasmic reticulum 0.500231643921093 0.500231643921116 0.4618657 0 hm5C_site_49893 DeepMRMD:0.4618657;iRNA_m5C:0 49894 chr1 248512651 248512651 1 + G T LUAD 248512649 + 248512629 248512669 41 CTCTCTTGCTCTGACACCTTCAGCAATGAGGTCATGATTGT CTCTCTTGCTCTGACACCTTCATCAATGAGGTCATGATTGT < 41bp 0.821741043946468 0.52145598966893 0.036943734 0.012591451 prediction 0.600570108555077 Functional Loss - OR14C36 ENSG00000177174 CDS Human protein_coding chr1:248512649 chr1:248512651 nonsynonymous SNV 0.397 0 23 hm5C_associated_SNPs_54542 0 0 0 0 0 unknown 0.500231643921041 0.500231643921092 0 0 hm5C_site_49894 DeepMRMD:0;iRNA_m5C:0 49895 chr10 99358577 99358577 1 + G T PRAD 99358575 + 99358555 99358595 41 GGCGAGTTTCCTTTCCTGACCAGCAGTGAGCGCCTCGAGGT GGCGAGTTTCCTTTCCTGACCATCAGTGAGCGCCTCGAGGT < 41bp 0.80028432808541 0.477961456065824 0.31745708 0.120507985 prediction 0.60056865617082 Functional Loss - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99358575 chr10:99358577 nonsynonymous SNV 0.990 2 23 hm5C_associated_SNPs_54543 0 0 0 0 1 nucleus 0.500230946071227 0.500231645812362 0 0 hm5C_site_49895 DeepMRMD:0;iRNA_m5C:0 49896 chr10 121212755 121212755 1 + G T UCEC 121212752 + 121212732 121212772 41 AACCACCCTCCGGAACCGCCCAAGAAAGGGCTGCTCCAGAG AACCACCCTCCGGAACCGCCCAATAAAGGGCTGCTCCAGAG < 41bp 0.800277389108657 0.440629944108289 0.410805 0.05622524 prediction 0.600554778217313 Functional Loss - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121212752 chr10:121212755 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_54544 0 0 0 0 2 Cytosol 0.50023164392109 0.500231643921093 0 0 hm5C_site_49896 DeepMRMD:0;iRNA_m5C:0 49897 chr14 60756587 60756587 1 + G T UCEC 60756584 + 60756564 60756604 41 CCATGTGATGCGCACATTAGCGAGTGAGAACATCCCCAGCC CCATGTGATGCGCACATTAGCGATTGAGAACATCCCCAGCC < 41bp 0.872295804158454 0.572025259477651 0.89711726 0.10648051 prediction 0.600541089361607 Functional Loss - PPM1A ENSG00000100614 CDS Human protein_coding chr14:60756584 chr14:60756587 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_54545 0 0 1 0 2 nucleoplasm 0.500231685397863 0.500231643921092 0.79423452 8.29535411472904e-08 hm5C_site_49897 DeepMRMD:0.79423452;iRNA_m5C:8.29535411472904e-08 49898 chr22 31523954 31523954 1 + G T LUAD 31523952 + 31523932 31523972 41 AACAGCCTCGTGTTCTGGTTCGGGGACCTGAACTTCCGCAT AACAGCCTCGTGTTCTGGTTCGTGGACCTGAACTTCCGCAT < 41bp 0.800262749195192 0.474825359358813 0.9319843 0.42975068 prediction 0.600525498390384 Functional Loss - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31523952 chr22:31523954 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_54546 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643921092 0.8639686 0 hm5C_site_49898 DeepMRMD:0.8639686;iRNA_m5C:0 49899 chr2 71894608 71894608 1 + G T UCEC 71894605 + 71894585 71894625 41 GGTCCCGGAGCACGTGGAGTCACGGCCCCTCTACAGCCCCC GGTCCCGGAGCACGTGGAGTCACTGCCCCTCTACAGCCCCC < 41bp 0.816211043384309 0.515951838005433 0.6439611 0.15088686 prediction 0.600518410757752 Functional Loss - DYSF ENSG00000135636 CDS Human protein_coding chr2:71894605 chr2:71894608 nonsynonymous SNV 0.996 5 24 hm5C_associated_SNPs_54547 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921093 0.2879222 0 hm5C_site_49899 DeepMRMD:0.2879222;iRNA_m5C:0 49900 chrX 26212324 26212324 1 + G T rs201187777 26212322 + 26212302 26212342 41 CTCTCCTGATGCAGGTGTTTCAGGCTCAAAATATGATGTGG CTCTCCTGATGCAGGTGTTTCATGCTCAAAATATGATGTGG < 41bp 0.800259102197887 0.475216552550018 0.9021478 0.101976186 prediction 0.600518204395774 Functional Loss - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26212322 chrX:26212324 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_54548 0 0 0 0 0 unknown 0.500232423110655 0.500231643833033 0.8042956 1.55855524464066e-06 hm5C_site_49900 DeepMRMD:0.8042956;iRNA_m5C:1.55855524464066e-06 49901 chrX 26212325 26212325 1 + G T SARC 26212322 + 26212302 26212342 41 CTCTCCTGATGCAGGTGTTTCAGGCTCAAAATATGATGTGG CTCTCCTGATGCAGGTGTTTCAGTCTCAAAATATGATGTGG < 41bp 0.800259102197887 0.423777025160562 0.9021478 0.42580584 prediction 0.600518204395774 Functional Loss - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26212322 chrX:26212325 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_54549 0 0 0 0 0 unknown 0.500232423110655 0.500231571124044 0.8042956 1.70397322163396e-06 hm5C_site_49901 DeepMRMD:0.8042956;iRNA_m5C:1.70397322163396e-06 49902 chr16 81944184 81944184 1 + A C STAD 81944180 + 81944160 81944200 41 CCACCATGGAGGGCGGGACCCTGAAATACTACTTGACTGAC CCACCATGGAGGGCGGGACCCTGACATACTACTTGACTGAC < 41bp 0.800227063768823 0.386268907712437 0.73374903 0.3683918 prediction 0.600454127537647 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81944180 chr16:81944184 nonsynonymous SNV 0.956 5 25 hm5C_associated_SNPs_54550 0 0 1 0 1 Cytosol 0.500231643940218 0.500231723793964 0.46749806 0 hm5C_site_49902 DeepMRMD:0.46749806;iRNA_m5C:0 49903 chr1 168282103 168282103 1 + G T LUAD 168282101 + 168282081 168282121 41 CACCCAAGCACCCACTTCGGCTGGTGTGGAGGTTCTGGGGG CACCCAAGCACCCACTTCGGCTTGTGTGGAGGTTCTGGGGG < 41bp 0.800216799739335 0.469335132171622 0.49925807 0.18239892 prediction 0.60043359947867 Functional Loss - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168282101 chr1:168282103 nonsynonymous SNV 0.539 2 23 hm5C_associated_SNPs_54551 0 0 1 0 0 cytosol 0.500231643905021 0.500231643921092 0 0 hm5C_site_49903 DeepMRMD:0;iRNA_m5C:0 49904 chr1 168282104 168282104 1 + G T LUAD 168282101 + 168282081 168282121 41 CACCCAAGCACCCACTTCGGCTGGTGTGGAGGTTCTGGGGG CACCCAAGCACCCACTTCGGCTGTTGTGGAGGTTCTGGGGG < 41bp 0.800216799739335 0.414230977759666 0.49925807 0.1817888 prediction 0.60043359947867 Functional Loss - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168282101 chr1:168282104 nonsynonymous SNV 0.540 2 24 hm5C_associated_SNPs_54552 0 0 1 0 0 cytosol 0.500231643905021 0.500231597278961 0 9.32521186935986e-08 hm5C_site_49904 DeepMRMD:0;iRNA_m5C:9.32521186935986e-08 49905 chr12 113314500 113314500 1 + G T UCEC 113314498 + 113314478 113314518 41 CCCACCCCGAGAGGAGAGAACAGGGGGAGTCGGGGGCTACC CCCACCCCGAGAGGAGAGAACATGGGGAGTCGGGGGCTACC < 41bp 0.862428885732129 0.562213657806581 0.9228411 0.88097656 prediction 0.600430455851097 Functional Loss - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113314498 chr12:113314500 nonsynonymous SNV 0.001 4 23 hm5C_associated_SNPs_54553 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.0837290799999999 0 hm5C_site_49905 DeepMRMD:0.0837290799999999;iRNA_m5C:0 49906 chr10 12150011 12150011 1 + G T GBM 12150009 + 12149989 12150029 41 CCTGTCGAATAGAGCGTTTCCTGCAGGTAAGGGTAACGTCT CCTGTCGAATAGAGCGTTTCCTTCAGGTAAGGGTAACGTCT < 41bp 0.800214562907064 0.487444776076683 0.073798716 0.080058604 prediction 0.600429125814128 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12150009 chr10:12150011 synonymous SNV . 0 23 hm5C_associated_SNPs_54554 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_49906 DeepMRMD:0;iRNA_m5C:0 49907 chr9 133270701 133270701 1 + G T rs190770030 133270698 + 133270678 133270718 41 GTGGAGGCAGAGCCAGCGCCCAAGATCACGTGGCACCGAGA GTGGAGGCAGAGCCAGCGCCCAATATCACGTGGCACCGAGA < 41bp 0.800213985618025 0.456802464399269 0.8692909 0.13074467 prediction 0.600427971236049 Functional Loss - HMCN2 ENSG00000148357;ENSG00000215428 intergenic Human other chr9:133270698 chr9:133270701 . 0.276 0 24 hm5C_associated_SNPs_54555 0 0 0 0 1 exosome 0.50023164394928 0.500231643921151 0.7385818 5.6256999059201e-11 hm5C_site_49907 DeepMRMD:0.7385818;iRNA_m5C:5.6256999059201e-11 49908 chr6 25776935 25776935 1 + G T UCEC 25776933 + 25776913 25776953 41 ATCCTCAGACTCATCACCATCAGGAAACTCTTCACTGCCAT ATCCTCAGACTCATCACCATCATGAAACTCTTCACTGCCAT < 41bp 0.834673855649189 0.534479004181121 0.6688291 0.20615992 prediction 0.600389702936137 Functional Loss - SLC17A4 ENSG00000146039 CDS Human protein_coding chr6:25776933 chr6:25776935 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_54556 0 0 0 0 1 exosome 0.500231643954785 0.500231643922263 0.3376582 6.5044858388319e-11 hm5C_site_49908 DeepMRMD:0.3376582;iRNA_m5C:6.5044858388319e-11 49909 chr3 25833414 25833414 1 + A C STAD 25833410 + 25833390 25833430 41 AAGAAGAGCCCGGATCTATGCAGAAGTTTTGGGCTATGGAC AAGAAGAGCCCGGATCTATGCAGACGTTTTGGGCTATGGAC < 41bp 0.890715461410564 0.590521289608703 0.8543024 0.72015625 prediction 0.600388343603723 Functional Loss - OXSM ENSG00000151093 CDS Human protein_coding chr3:25833410 chr3:25833414 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_54557 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921093 0.2682923 0 hm5C_site_49909 DeepMRMD:0.2682923;iRNA_m5C:0 49910 chr5 75621277 75621277 1 + A C KIRC 75621273 + 75621253 75621293 41 TTTGGCTCTCTGGTCAGCATCACCAAATCAATCCCCATCCT TTTGGCTCTCTGGTCAGCATCACCCAATCAATCCCCATCCT < 41bp 0.800193800028246 0.391487436170707 0.12894616 0.11734575 prediction 0.600387600056492 Functional Loss - SV2C ENSG00000122012 CDS Human protein_coding chr5:75621273 chr5:75621277 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_54558 0 0 0 0 1 exosome 0.500231633557334 0.500231643921095 0 0 hm5C_site_49910 DeepMRMD:0;iRNA_m5C:0 49911 chr7 99048353 99048353 1 + G T LGG 99048351 + 99048331 99048371 41 TCTGCAGGCACCGGCACACACGGAGAGTCATCTGTGTGAAT TCTGCAGGCACCGGCACACACGTAGAGTCATCTGTGTGAAT < 41bp 0.800189347336829 0.464204115685348 0.89701086 0.20185784 prediction 0.600378694673658 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99048351 chr7:99048353 synonymous SNV . 0 23 hm5C_associated_SNPs_54559 0 0 1 0 2 chromatin 0.500230095723275 0.500236362747033 0.79402172 0 hm5C_site_49911 DeepMRMD:0.79402172;iRNA_m5C:0 49912 chr17 51900801 51900801 1 + C A LUSC 51900804 - 51900784 51900824 41 GCTTCATCAGACAAGGTTTGCTGGGGACCCTCACATCCAGG GCTTCATCAGACAAGGTTTGCTGTGGACCCTCACATCCAGG < 41bp 0.800187251398243 0.428153346212483 0.6340227 0.09631652 prediction 0.600374502796486 Functional Loss - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51900804 chr17:51900801 nonsynonymous SNV 0.965 2 24 hm5C_associated_SNPs_54560 0 0 0 0 0 exosome 0.500231643921093 0.500231648562102 0.2680454 0 hm5C_site_49912 DeepMRMD:0.2680454;iRNA_m5C:0 49913 chr1 161068515 161068515 1 + G T SARC 161068513 + 161068493 161068533 41 CGATACGGTGGTTTTCGACCCAGCTAGGGGCCAGGCCGTAC CGATACGGTGGTTTTCGACCCATCTAGGGGCCAGGCCGTAC < 41bp 0.800175954039816 0.479651046863132 0.17936811 0.07196441 prediction 0.600351908079632 Functional Loss - KLHDC9 ENSG00000162755 CDS Human protein_coding chr1:161068513 chr1:161068515 nonsynonymous SNV 0.037 0 23 hm5C_associated_SNPs_54561 0 0 0 0 1 chromatin 0.500231660156517 0.500231643925911 0 3.24612114965817e-08 hm5C_site_49913 DeepMRMD:0;iRNA_m5C:3.24612114965817e-08 49914 chr11 71511912 71511912 1 + G T rs377536750 71511909 + 71511889 71511929 41 GGTCACCACCTGGCTGAACCCAGGTCCCCGACCCAACAACA GGTCACCACCTGGCTGAACCCAGTTCCCCGACCCAACAACA < 41bp 0.800164242270577 0.422489698691041 0.45242846 0.12643093 prediction 0.600328484541154 Functional Loss - ALG1L9P ENSG00000248671;ENSG00000254978 ncRNA_intronic Human other chr11:71511909 chr11:71511912 . . 0 24 hm5C_associated_SNPs_54562 0 0 0 0 0 unknown 0.500231643921092 0.500231643921098 0 0 hm5C_site_49914 DeepMRMD:0;iRNA_m5C:0 49915 chr5 43041924 43041924 1 + G T rs193019466 43041921 + 43041901 43041941 41 AATCCGAGGCCACTGGAAACCCGGAGCTGCTGACCAACGAG AATCCGAGGCCACTGGAAACCCGTAGCTGCTGACCAACGAG < 41bp 0.800152322884382 0.463999939608863 0.9113697 0.58387834 prediction 0.600304645768765 Functional Loss - LOC648987 ENSG00000215068 ncRNA_exonic Human antisense chr5:43041921 chr5:43041924 . . 0 24 hm5C_associated_SNPs_54563 0 0 0 0 1 unknown 0.500231643906135 0.500231643921092 0.65498272 0 hm5C_site_49915 DeepMRMD:0.65498272;iRNA_m5C:0 49916 chr12 4657926 4657926 1 + A C rs116552921 4657922 + 4657902 4657942 41 AAGAAAAGCAGCATCTAAAGCTGCAGCACAGCAGAGGAAGA AAGAAAAGCAGCATCTAAAGCTGCCGCACAGCAGAGGAAGA < 41bp 0.800130761902288 0.393619810757928 0.21374974 0.20211908 prediction 0.600261523804576 Functional Loss - RAD51AP1 ENSG00000111247 CDS Human protein_coding chr12:4657922 chr12:4657926 synonymous SNV . 0 25 hm5C_associated_SNPs_54564 0 0 1 0 2 Ribosome 0.500233490700716 0.50023164392109 0 3.69355925244896e-06 hm5C_site_49916 DeepMRMD:0;iRNA_m5C:3.69355925244896e-06 49917 chr11 86086236 86086236 1 + G T LUAD 86086233 + 86086213 86086253 41 ATACGATCGCCCGTGCCCTGCAGGACCTGGGCAGGCAGGTG ATACGATCGCCCGTGCCCTGCAGTACCTGGGCAGGCAGGTG < 41bp 0.885896018470485 0.585769591304723 0.39466116 0.1466685 prediction 0.600252854331523 Functional Loss - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86086233 chr11:86086236 nonsynonymous SNV 0.989 3 24 hm5C_associated_SNPs_54565 0 0 0 0 0 cytosol 0.500231669058089 0.500231229890186 0 8.78335806753228e-07 hm5C_site_49917 DeepMRMD:0;iRNA_m5C:8.78335806753228e-07 49918 chr10 75551702 75551702 1 + G T COAD 75551699 + 75551679 75551719 41 GGGGCCAACACAAGAAGACGCTGGAGCGGCTCTTCCCCGGC GGGGCCAACACAAGAAGACGCTGTAGCGGCTCTTCCCCGGC < 41bp 0.882300613278929 0.582177923985155 0.27714717 0.06871849 prediction 0.600245378587548 Functional Loss - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75551699 chr10:75551702 stopgain 0.993 0 24 hm5C_associated_SNPs_54566 0 0 1 0 0 Cytosol 0.500231643921093 0.500231643921092 0 2.22044604925031e-16 hm5C_site_49918 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 49919 chr8 134232987 134232987 1 + G T LUAD 134232985 + 134232965 134233005 41 GTCTCTGGTGCCCCCACCCGCGGCGCGTGAGCATACCTGGC GTCTCTGGTGCCCCCACCCGCGTCGCGTGAGCATACCTGGC < 41bp 0.800102855967443 0.460004635777986 0.8709727 0.23931739 prediction 0.600205711934886 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134232985 chr8:134232987 synonymous SNV . 0 23 hm5C_associated_SNPs_54567 0 0 0 0 1 nucleus 0.500231643921092 0.500231643929544 0.7419454 0 hm5C_site_49919 DeepMRMD:0.7419454;iRNA_m5C:0 49920 chr19 49206557 49206557 1 + A C KIRP 49206553 + 49206533 49206573 41 TCAGAATCACCCTGCCGGTGCTGCACAGCGCCACGGCCAGC TCAGAATCACCCTGCCGGTGCTGCCCAGCGCCACGGCCAGC < 41bp 0.800102805130226 0.406718092659809 0.17222786 0.2203905 prediction 0.600205610260452 Functional Loss - FUT2 ENSG00000176920 CDS Human protein_coding chr19:49206553 chr19:49206557 nonsynonymous SNV 0.013 2 25 hm5C_associated_SNPs_54568 0 0 0 0 0 Nucleus 0.500231644314348 0.500231642357742 0 3.91321086645746e-09 hm5C_site_49920 DeepMRMD:0;iRNA_m5C:3.91321086645746e-09 49921 chr4 146560633 146560633 1 + G T BRCA 146560630 + 146560610 146560650 41 CTTGTAGAATCAACTCACAGCAGGAAAAAGGAGTTAGCCCA CTTGTAGAATCAACTCACAGCAGTAAAAAGGAGTTAGCCCA < 41bp 0.874088771963136 0.573995731778645 0.84246695 0.39860386 prediction 0.600186080368981 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146560630 chr4:146560633 nonsynonymous SNV 0.984 2 24 hm5C_associated_SNPs_54569 0 0 0 1 1 nucleoplasm 0.500231643921076 0.500231643929623 0.6849339 0 hm5C_site_49921 DeepMRMD:0.6849339;iRNA_m5C:0 49922 chr5 57790598 57790598 1 + G T UCEC 57790595 + 57790575 57790615 41 ATGAAATCTCAGTTGAAACCCAAGACCACAAATCTGCTGTC ATGAAATCTCAGTTGAAACCCAATACCACAAATCTGCTGTC < 41bp 0.873253364892136 0.573165067615836 0.42980635 0.42115176 prediction 0.6001765945526 Functional Loss - GAPT ENSG00000175857 CDS Human protein_coding chr5:57790595 chr5:57790598 nonsynonymous SNV 0.002 3 24 hm5C_associated_SNPs_54570 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_49922 DeepMRMD:0;iRNA_m5C:0 49923 chr11 640109 640109 1 + A C LUSC 640105 + 640085 640125 41 CGCCCGCCGCGCCCAGCCTCCCCCAGGACCCCTGCGGCCCC CGCCCGCCGCGCCCAGCCTCCCCCCGGACCCCTGCGGCCCC < 41bp 0.800081859173735 0.43429136624889 0.20971233 0.35700512 prediction 0.600163718347469 Functional Loss - DRD4 ENSG00000069696 CDS Human protein_coding chr11:640105 chr11:640109 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_54571 0 0 0 0 0 exosome 0.500231604681327 0.50023164493974 0 0 hm5C_site_49923 DeepMRMD:0;iRNA_m5C:0 49924 chr11 56019882 56019882 1 + G T LUSC 56019879 + 56019859 56019899 41 TTTGCAATCTATCTCTTTACCTTGATAGGCAATTTAGGGCT TTTGCAATCTATCTCTTTACCTTTATAGGCAATTTAGGGCT < 41bp 0.861367713669872 0.561308056606616 0.1172826 0.08370587 prediction 0.600119314126511 Functional Loss - OR5T3 ENSG00000172489 CDS Human protein_coding chr11:56019879 chr11:56019882 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_54572 0 0 0 0 0 unknown 0.500231640047446 0.500231643871841 0 0 hm5C_site_49924 DeepMRMD:0;iRNA_m5C:0 49925 chr6 42147087 42147087 1 + G T UCEC 42147085 + 42147065 42147105 41 CCCGCATCGTGCGCAGGCTCCAGAATGGCGAGCAAGACGAG CCCGCATCGTGCGCAGGCTCCATAATGGCGAGCAAGACGAG < 41bp 0.836899986726232 0.536849413341779 0.31017804 0.19404602 prediction 0.600101146768906 Functional Loss - GUCA1A ENSG00000048545 CDS Human protein_coding chr6:42147085 chr6:42147087 nonsynonymous SNV 0.963 0 23 hm5C_associated_SNPs_54573 0 0 0 0 0 Cytosol 0.50023164654975 0.500240661572745 0 0 hm5C_site_49925 DeepMRMD:0;iRNA_m5C:0 49926 chr12 113407849 113407849 1 + G T rs7313970 113407847 + 113407827 113407867 41 GCCCTCAGCATGAGGAAATTCAGGGTCCCCTACCAGATGAG GCCCTCAGCATGAGGAAATTCATGGTCCCCTACCAGATGAG < 41bp 0.800040421452628 0.471089538666145 0.90377545 0.1624564 prediction 0.600080842905256 Functional Loss - OAS3 ENSG00000257452 ncRNA_intronic Human antisense chr12:113407847 chr12:113407849 . . 0 23 hm5C_associated_SNPs_54574 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921456 0.8075509 0 hm5C_site_49926 DeepMRMD:0.8075509;iRNA_m5C:0 49927 chr8 68864764 68864764 1 + G T LIHC 68864762 + 68864742 68864782 41 ATGTGGGCACGCTGGAGTTCCTGGTGTCGGTGAGTGTCCCC ATGTGGGCACGCTGGAGTTCCTTGTGTCGGTGAGTGTCCCC < 41bp 0.824662445106447 0.524642243337127 0.4320432 0.08213794 prediction 0.600040403538641 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68864762 chr8:68864764 synonymous SNV . 0 23 hm5C_associated_SNPs_54575 0 0 0 0 1 Nucleus 0.501683391325628 0.500232202038057 0 0.00290237857514186 hm5C_site_49927 DeepMRMD:0;iRNA_m5C:0.00290237857514186 49928 chr4 83369174 83369174 1 + G T LUSC 83369172 + 83369152 83369192 41 ATGTCAGTCTTTTGAGGAAACAGGTTGGGACATTTCTGTCT ATGTCAGTCTTTTGAGGAAACATGTTGGGACATTTCTGTCT < 41bp 0.800019688502954 0.481338445844648 0.23083496 0.16562763 prediction 0.600039377005908 Functional Loss - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83369172 chr4:83369174 nonsynonymous SNV 0.951 4 23 hm5C_associated_SNPs_54576 0 0 1 0 1 Ribosome 0.500231597780212 0.500231643057667 0 0 hm5C_site_49928 DeepMRMD:0;iRNA_m5C:0 49929 chr3 113677256 113677256 1 + G T CESC 113677254 + 113677234 113677274 41 GTGGTACTCTGTGATCATCACAGCAGGCATGGCCTACATCT GTGGTACTCTGTGATCATCACATCAGGCATGGCCTACATCT < 41bp 0.812541737566105 0.512522175457071 0.3411279 0.1508618 prediction 0.600039124218067 Functional Loss - ZDHHC23 ENSG00000184307 CDS Human protein_coding chr3:113677254 chr3:113677256 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_54577 0 0 0 0 1 Nucleus 0.500231618395108 0.500231659507869 0 0 hm5C_site_49929 DeepMRMD:0;iRNA_m5C:0 49930 chr17 31324519 31324519 1 + G T UCEC 31324516 + 31324496 31324536 41 TCTGTGCCATGAAGATAACCCAAGAGCCTCAGGGTCTGGGT TCTGTGCCATGAAGATAACCCAATAGCCTCAGGGTCTGGGT < 41bp 0.884873010152057 0.584856337298857 0.098412216 0.049292237 prediction 0.6000333457064 Functional Loss - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31324516 chr17:31324519 stopgain 0.010 0 24 hm5C_associated_SNPs_54578 0 0 0 3 2 unknown 0.50023164389279 0.50023164392018 0 0 hm5C_site_49930 DeepMRMD:0;iRNA_m5C:0 49931 chr11 4510578 4510578 1 + G T LUSC 4510576 + 4510556 4510596 41 CATCACCAAGATTGGCATGGCTGCTGTGGCCCGGGCTGTGA CATCACCAAGATTGGCATGGCTTCTGTGGCCCGGGCTGTGA < 41bp 0.824649947379045 0.524640984573124 0.090801984 0.067765504 prediction 0.600017925611842 Functional Loss - OR52K1 ENSG00000196778 CDS Human protein_coding chr11:4510576 chr11:4510578 nonsynonymous SNV 0.861 0 23 hm5C_associated_SNPs_54579 0 0 0 0 0 exosome 0.500231547146366 0.500230843036332 0 1.40822006744479e-06 hm5C_site_49931 DeepMRMD:0;iRNA_m5C:1.40822006744479e-06 Morning person 49932 chr1 155178728 155178728 1 + G T STAD 155178726 + 155178706 155178746 41 GCGCACAAGACCCCGCTCTCCAGAGCCTGCCGCGCCTTCAG GCGCACAAGACCCCGCTCTCCATAGCCTGCCGCGCCTTCAG < 41bp 0.860442381564127 0.560438958521908 0.9276591 0.3174027 prediction 0.600006846084438 Functional Loss - MTX1 ENSG00000173171 CDS Human protein_coding chr1:155178726 chr1:155178728 stopgain 0.000 0 23 hm5C_associated_SNPs_54580 0 0 0 0 0 Ribosome 0.500231642469133 0.500231630027902 0.8553182 2.48824616466692e-08 hm5C_site_49932 DeepMRMD:0.8553182;iRNA_m5C:2.48824616466692e-08 49933 chr10 101716848 101716848 1 + G C BLCA 101716848 + 101716828 101716868 41 AGTGCCACTGCCGGCTCTGTGAGGAGAGGCAGAGCTCGCGG AGTGCCACTGCCGGCTCTGTCAGGAGAGGCAGAGCTCGCGG Direct Gain 0 0.992191463087968 0 0.978957772254944 prediction 0.984382926175935 Functional Gain - DNMBP ENSG00000107554 CDS Human protein_coding chr10:101716848 chr10:101716848 stopgain 0.900 1 21 hm5C_associated_SNPs_129875 0 0 0 0 0 Nucleus 0 0.500231643921092 0.957915544509888 0.000463287842184856 hm5C_site_49933 DeepMRMD:0.957915544509888;iRNA_m5C:0.000463287842184856 49934 chr2 69472570 69472570 1 + A G HNSC 69472570 - 69472550 69472590 41 GGAGGGAGGAGGTGCCCTGTTGGGAGGTGGAGCCTGGGGAG GGAGGGAGGAGGTGCCCTGTCGGGAGGTGGAGCCTGGGGAG Direct Gain 0 0.991072698810209 0 0.970911741256714 prediction 0.982145397620418 Functional Gain - ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69472570 chr2:69472570 nonsynonymous SNV 0.989 0 21 hm5C_associated_SNPs_129876 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.941823482513428 0.000463287842184856 hm5C_site_49934 DeepMRMD:0.941823482513428;iRNA_m5C:0.000463287842184856 49935 chr1 146649797 146649797 1 + G C rs587651291 146649797 + 146649777 146649817 41 GGACTCAGGGACGACAACTTGGAGAGTCGCATCTCCGACAC GGACTCAGGGACGACAACTTCGAGAGTCGCATCTCCGACAC Direct Gain 0 0.990804865312592 0 0.88703066110611 prediction 0.981609730625185 Functional Gain - PDIA3P1 ENSG00000180867 ncRNA_exonic Human processed_pseudogene chr1:146649797 chr1:146649797 . . 0 21 hm5C_associated_SNPs_129877 0 0 0 0 0 unknown 0 0.500231634266661 0.77406132221222 0.000463268533321681 hm5C_site_49935 DeepMRMD:0.77406132221222;iRNA_m5C:0.000463268533321681 49936 chr1 84764245 84764245 1 + G C rs554635247 84764245 + 84764225 84764265 41 ACCTCCCGGCGCGGCCATGCGGGGAGGTAAGTGATCTGCCT ACCTCCCGGCGCGGCCATGCCGGGAGGTAAGTGATCTGCCT Direct Gain 0 0.99058058902764 0 0.959003567695618 prediction 0.981161178055279 Functional Gain - SAMD13 ENSG00000203943 CDS Human protein_coding chr1:84764245 chr1:84764245 nonsynonymous SNV 0.804 0 21 hm5C_associated_SNPs_129878 0 0 0 0 1 nucleus 0 0.500231643921092 0.918007135391236 0.000463287842184856 hm5C_site_49936 DeepMRMD:0.918007135391236;iRNA_m5C:0.000463287842184856 49937 chr2 231921586 231921586 1 + G C rs12469096 231921586 + 231921566 231921606 41 CCCTGGGCGGGCGGGGTCCTGGCGAGAAGCGAGCCGGCGGC CCCTGGGCGGGCGGGGTCCTCGCGAGAAGCGAGCCGGCGGC Direct Gain 0 0.99046982937829 0 0.953215956687927 prediction 0.980939658756581 Functional Gain - PSMD1 ENSG00000173692 UTR5 Human protein_coding chr2:231921586 chr2:231921586 . . 0 21 hm5C_associated_SNPs_129879 0 0 0 0 0 Nucleus 0 0.500231643921087 0.906431913375854 0.000463287842173754 hm5C_site_49937 DeepMRMD:0.906431913375854;iRNA_m5C:0.000463287842173754 49938 chr6 12292633 12292633 1 + A G STAD 12292633 - 12292613 12292653 41 GCGGAGCCGCCAGGGTGGACTGGGAGTGGGTTTCTCCCCGC GCGGAGCCGCCAGGGTGGACCGGGAGTGGGTTTCTCCCCGC Direct Gain 0 0.989487842533961 0 0.877162337303162 prediction 0.978975685067923 Functional Gain - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12292633 chr6:12292633 nonsynonymous SNV 0.041 1 21 hm5C_associated_SNPs_129880 0 0 0 0 0 exosome 0 0.500231643921297 0.754324674606324 0.000463287842593196 hm5C_site_49938 DeepMRMD:0.754324674606324;iRNA_m5C:0.000463287842593196 49939 chr10 72489928 72489928 1 + A G STAD 72489928 - 72489908 72489948 41 GGCTGGGGTCCTGGCGCTGCTGGGAGTGTGCCCAGCGACAC GGCTGGGGTCCTGGCGCTGCCGGGAGTGTGCCCAGCGACAC Direct Gain 0 0.989100291840496 0 0.926144003868103 prediction 0.978200583680992 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72489928 chr10:72489928 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_129881 0 0 0 0 0 chromatin 0 0.500231643914987 0.852288007736206 0.000463287829974623 hm5C_site_49939 DeepMRMD:0.852288007736206;iRNA_m5C:0.000463287829974623 49940 chr17 44060859 44060859 1 + A G rs63750072 44060859 - 44060839 44060879 41 CCTTGGAGGGAGGGGAGTCTTGGGGGGAGGACTCATCGACG CCTTGGAGGGAGGGGAGTCTCGGGGGGAGGACTCATCGACG Direct Gain 0 0.988780123315929 0 0.967960953712463 prediction 0.977560246631858 Functional Gain - MAPT ENSG00000186868 CDS Human protein_coding chr17:44060859 chr17:44060859 nonsynonymous SNV 0.138 3 21 hm5C_associated_SNPs_129882 2 0 0 0 0 cytosol 0 0.500231643921092 0.935921907424926 0.000463287842184856 hm5C_site_49940 DeepMRMD:0.935921907424926;iRNA_m5C:0.000463287842184856 not provided not provided 49941 chr6 50791301 50791301 1 + A G SKCM 50791301 - 50791281 50791321 41 GGGAGTAGGGGTCGTTGACGTGGGAGTAGGGGTCCTGGCTC GGGAGTAGGGGTCGTTGACGCGGGAGTAGGGGTCCTGGCTC Direct Gain 0 0.988562941748244 0 0.96359121799469 prediction 0.977125883496489 Functional Gain - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50791301 chr6:50791301 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_129883 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.92718243598938 0.000463287842184856 hm5C_site_49941 DeepMRMD:0.92718243598938;iRNA_m5C:0.000463287842184856 49942 chr5 140531854 140531854 1 + T G rs200563191 140531854 - 140531834 140531874 41 GCTTGGGCCGGGGCCGCCTCAGGGAGAGGCAGGTAGGGCTG GCTTGGGCCGGGGCCGCCTCCGGGAGAGGCAGGTAGGGCTG Direct Gain 0 0.988061465036607 0 0.963789105415344 prediction 0.976122930073213 Functional Gain - PCDHB6 ENSG00000113211 CDS Human protein_coding chr5:140531854 chr5:140531854 synonymous SNV . 0 21 hm5C_associated_SNPs_129884 0 0 0 0 0 exosome 0 0.500231643919967 0.927578210830688 0.000463287839933102 hm5C_site_49942 DeepMRMD:0.927578210830688;iRNA_m5C:0.000463287839933102 49943 chr17 43226681 43226681 1 + G C CESC 43226681 + 43226661 43226701 41 GCGCGGAGGAGCGGGTGCCCGAGGAGGACAGTAGGTGGCAA GCGCGGAGGAGCGGGTGCCCCAGGAGGACAGTAGGTGGCAA Direct Gain 0 0.987772355381033 0 0.940768837928772 prediction 0.975544710762066 Functional Gain - HEXIM1 ENSG00000186834 CDS Human protein_coding chr17:43226681 chr17:43226681 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_129885 0 0 1 0 0 Ribosome 0 0.500231643921092 0.881537675857544 0.000463287842184856 hm5C_site_49943 DeepMRMD:0.881537675857544;iRNA_m5C:0.000463287842184856 49944 chr19 51273966 51273966 1 + G C ESCA 51273966 + 51273946 51273986 41 ACTCTTCCGGATGCCTGTCTGAGGAGGTGGGGTCCCTCCGC ACTCTTCCGGATGCCTGTCTCAGGAGGTGGGGTCCCTCCGC Direct Gain 0 0.987765219262434 0 0.982385516166687 prediction 0.975530438524868 Functional Gain - GPR32 ENSG00000142511 CDS Human protein_coding chr19:51273966 chr19:51273966 nonsynonymous SNV 0.043 0 21 hm5C_associated_SNPs_129886 0 0 0 0 0 unknown 0 0.500231643921386 0.964771032333374 0.000463287842771276 hm5C_site_49944 DeepMRMD:0.964771032333374;iRNA_m5C:0.000463287842771276 49945 chr15 50474763 50474763 1 + G C UCEC 50474763 + 50474743 50474783 41 GCCGGAGGGTGCGCAGCTACGGGAAGCGGCGGCCGGCGCGC GCCGGAGGGTGCGCAGCTACCGGAAGCGGCGGCCGGCGCGC Direct Gain 0 0.987518575959602 0 0.916759967803955 prediction 0.975037151919204 Functional Gain - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50474763 chr15:50474763 nonsynonymous SNV 0.042 0 21 hm5C_associated_SNPs_129887 0 0 1 0 0 Ribosome 0 0.500231643916924 0.83351993560791 0.000463287833848414 hm5C_site_49945 DeepMRMD:0.83351993560791;iRNA_m5C:0.000463287833848414 49946 chr6 108616389 108616389 1 + C G BLCA 108616389 - 108616369 108616409 41 CTTCCCAGGGGCGGTGGCCAGAGGAGCGAGAGCGGCGGCCC CTTCCCAGGGGCGGTGGCCACAGGAGCGAGAGCGGCGGCCC Direct Gain 0 0.987453082074021 0 0.959446549415588 prediction 0.974906164148043 Functional Gain - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108616389 chr6:108616389 nonsynonymous SNV 0.823 0 21 hm5C_associated_SNPs_129888 0 0 0 0 0 unknown 0 0.500231644599476 0.918893098831176 0.000463289198951333 hm5C_site_49946 DeepMRMD:0.918893098831176;iRNA_m5C:0.000463289198951333 49947 chr9 130891587 130891587 1 + T C rs1418421 130891587 + 130891567 130891607 41 GTTTGGCCTGCTGGGCTTAGTAGGAGGGTCTGGCCCGGGGC GTTTGGCCTGCTGGGCTTAGCAGGAGGGTCTGGCCCGGGGC Direct Gain 0 0.986930561578614 0 0.948064029216766 prediction 0.973861123157228 Functional Gain - PTGES2-AS1 ENSG00000148334;ENSG00000232850 upstream;downstream Human other chr9:130891587 chr9:130891587 . . 0 21 hm5C_associated_SNPs_129889 0 0 0 0 0 unknown 0 0.500231643921092 0.896128058433532 0.000463287842184856 hm5C_site_49947 DeepMRMD:0.896128058433532;iRNA_m5C:0.000463287842184856 49948 chr9 103189743 103189743 1 + G C rs188954095 103189743 + 103189723 103189763 41 GTGGGGGGCGCGGGCCGGGCGTAGAGGGGGCCGGGGGCCGG GTGGGGGGCGCGGGCCGGGCCTAGAGGGGGCCGGGGGCCGG Direct Gain 0 0.986587317500084 0 0.898621559143066 prediction 0.973174635000168 Functional Gain - MSANTD3 ENSG00000066697 UTR5 Human protein_coding chr9:103189743 chr9:103189743 . . 0 21 hm5C_associated_SNPs_129890 0 0 1 0 0 Cytosol 0 0.500231643921092 0.797243118286132 0.000463287842184856 hm5C_site_49948 DeepMRMD:0.797243118286132;iRNA_m5C:0.000463287842184856 49949 chr12 105380131 105380131 1 + A C UCEC 105380131 + 105380111 105380151 41 AGTGCAGGCTTGAGGGAAGCATGGAGGTCCATGGCAAGCCC AGTGCAGGCTTGAGGGAAGCCTGGAGGTCCATGGCAAGCCC Direct Gain 0 0.986235864936658 0 0.765600681304932 prediction 0.972471729873316 Functional Gain - C12orf45 ENSG00000151131 CDS Human protein_coding chr12:105380131 chr12:105380131 nonsynonymous SNV 0.565 2 21 hm5C_associated_SNPs_129891 0 0 1 0 0 Ribosome 0 0.500231643920105 0.531201362609864 0.000463287840209103 hm5C_site_49949 DeepMRMD:0.531201362609864;iRNA_m5C:0.000463287840209103 49950 chr20 55905017 55905017 1 + A C BLCA 55905017 + 55904997 55905037 41 CTGCCCTGAGGAGAGGTGGCAGGGAGCCCCCAACTGGGGGA CTGCCCTGAGGAGAGGTGGCCGGGAGCCCCCAACTGGGGGA Direct Gain 0 0.985249534017231 0 0.881196737289429 prediction 0.970499068034462 Functional Gain - SPO11 ENSG00000054796 CDS Human protein_coding chr20:55905017 chr20:55905017 synonymous SNV . 0 21 hm5C_associated_SNPs_129892 0 0 0 0 1 unknown 0 0.500231643921092 0.762393474578858 0.000463287842184856 hm5C_site_49950 DeepMRMD:0.762393474578858;iRNA_m5C:0.000463287842184856 49951 chr14 24839354 24839354 1 + C G CESC 24839354 - 24839334 24839374 41 GGGGTGGGCCCAGGAGCACTGAGGAGTAGCCAGCTATCCTC GGGGTGGGCCCAGGAGCACTCAGGAGTAGCCAGCTATCCTC Direct Gain 0 0.98520835089234 0 0.948216199874878 prediction 0.970416701784679 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24839354 chr14:24839354 synonymous SNV . 0 21 hm5C_associated_SNPs_129893 0 0 0 0 0 cytosol 0 0.500231643921137 0.896432399749756 0.00046328784227434 hm5C_site_49951 DeepMRMD:0.896432399749756;iRNA_m5C:0.00046328784227434 49952 chr21 37785423 37785423 1 + C G rs566995930 37785423 - 37785403 37785443 41 TGGGGCCTGTCTGGCCTGAGGGGGAGTCGTGCCGGGGCTGC TGGGGCCTGTCTGGCCTGAGCGGGAGTCGTGCCGGGGCTGC Direct Gain 0 0.984922508844985 0 0.93690550327301 prediction 0.969845017689969 Functional Gain - CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37785423 chr21:37785423 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_129894 0 0 0 0 0 Ribosome 0 0.500231643867678 0.87381100654602 0.000463287735355422 hm5C_site_49952 DeepMRMD:0.87381100654602;iRNA_m5C:0.000463287735355422 49953 chr2 223168891 223168891 1 + G C BLCA 223168891 + 223168871 223168911 41 GGACTGCAGAGAGGCGTTTTGAAGAGTGCTGCGCGCACCTG GGACTGCAGAGAGGCGTTTTCAAGAGTGCTGCGCGCACCTG Direct Gain 0 0.984918768419949 0 0.914074003696442 prediction 0.969837536839897 Functional Gain - CCDC140 ENSG00000163081 CDS Human protein_coding chr2:223168891 chr2:223168891 nonsynonymous SNV 0.007 1 21 hm5C_associated_SNPs_129895 0 0 0 0 0 exosome 0 0.500231534769924 0.828148007392884 0.000463069539847982 hm5C_site_49953 DeepMRMD:0.828148007392884;iRNA_m5C:0.000463069539847982 49954 chr17 4488175 4488175 1 + C G rs558671271 4488175 - 4488155 4488195 41 TGCCGGGAGTGCCGGGCACCGGGGACATCCCGCTGGCCAAG TGCCGGGAGTGCCGGGCACCCGGGACATCCCGCTGGCCAAG Direct Gain 0 0.984826261714235 0 0.878691613674164 prediction 0.96965252342847 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4488175 chr17:4488175 nonsynonymous SNV 0.021 1 21 hm5C_associated_SNPs_129896 0 0 0 0 0 insoluble cytoplasm 0 0.500231689513621 0.757383227348328 0.000463379027241473 hm5C_site_49954 DeepMRMD:0.757383227348328;iRNA_m5C:0.000463379027241473 49955 chr17 4488207 4488207 1 + C G rs538037200 4488207 - 4488187 4488227 41 GGGAACCCCGGGCGCGGGCGGGGGGCTGGGCGTGCCGGGAG GGGAACCCCGGGCGCGGGCGCGGGGCTGGGCGTGCCGGGAG Direct Gain 0 0.984818490783273 0 0.966925084590912 prediction 0.969636981566546 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4488207 chr17:4488207 nonsynonymous SNV 0.107 3 21 hm5C_associated_SNPs_129897 0 0 0 0 0 insoluble cytoplasm 0 0.500231643905674 0.933850169181824 0.000463287811348634 hm5C_site_49955 DeepMRMD:0.933850169181824;iRNA_m5C:0.000463287811348634 49956 chr16 69376287 69376287 1 + T C rs148249150 69376287 + 69376267 69376307 41 GCGGACGGATCACTTGAGGTTAGGAGTTTGAGACCAGCCTG GCGGACGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTG Direct Gain 0 0.984748600832119 0 0.875625491142273 prediction 0.969497201664239 Functional Gain - NIP7 ENSG00000132603 UTR3 Human protein_coding chr16:69376287 chr16:69376287 . . 0 21 hm5C_associated_SNPs_129898 0 0 0 1 0 Ribosome 0 0.500231643958622 0.751250982284546 0.000463287917243038 hm5C_site_49956 DeepMRMD:0.751250982284546;iRNA_m5C:0.000463287917243038 49957 chr17 4926847 4926847 1 + A G STAD 4926847 - 4926827 4926867 41 GGCTGACGGCATGCGGTCACTGGGGGCTGCCTCCTCTGCTG GGCTGACGGCATGCGGTCACCGGGGGCTGCCTCCTCTGCTG Direct Gain 0 0.984741274732514 0 0.974544167518616 prediction 0.969482549465028 Functional Gain - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926847 chr17:4926847 nonsynonymous SNV 0.655 0 21 hm5C_associated_SNPs_129899 0 0 0 0 0 Ribosome 0 0.500231643928315 0.949088335037232 0.00046328785662908 hm5C_site_49957 DeepMRMD:0.949088335037232;iRNA_m5C:0.00046328785662908 49958 chr5 95067647 95067647 1 + G C COAD 95067647 + 95067627 95067667 41 GGGCTTATCCGCACTTACCTGGGGAGAAGCCCTCTGGTCTC GGGCTTATCCGCACTTACCTCGGGAGAAGCCCTCTGGTCTC Direct Gain 0 0.984589786936039 0 0.95508486032486 prediction 0.969179573872079 Functional Gain - RHOBTB3 ENSG00000164292 CDS Human protein_coding chr5:95067647 chr5:95067647 synonymous SNV . 0 21 hm5C_associated_SNPs_129900 0 0 1 0 1 Cytosol 0 0.500231643856159 0.91016972064972 0.00046328771231896 hm5C_site_49958 DeepMRMD:0.91016972064972;iRNA_m5C:0.00046328771231896 49959 chr7 92077139 92077139 1 + T C rs532003876 92077139 + 92077119 92077159 41 GGGGAGATCCTCTGCCATCATTGCACTGGCCGGGGCGGCGC GGGGAGATCCTCTGCCATCACTGCACTGGCCGGGGCGGCGC Direct Gain 0 0.984491703590235 0 0.851851046085358 prediction 0.968983407180469 Functional Gain - GATAD1 ENSG00000157259 CDS Human protein_coding chr7:92077139 chr7:92077139 synonymous SNV . 0 21 hm5C_associated_SNPs_129901 0 0 1 0 0 Ribosome 0 0.500231643921092 0.703702092170716 0.000463287842184856 hm5C_site_49959 DeepMRMD:0.703702092170716;iRNA_m5C:0.000463287842184856 49960 chr1 17265567 17265567 1 + C G rs376064239 17265567 - 17265547 17265587 41 TGGAGGAGTCTGAGCAGGCCGGGGAGGGGCCTCGGCGGGGT TGGAGGAGTCTGAGCAGGCCCGGGAGGGGCCTCGGCGGGGT Direct Gain 0 0.984391922331393 0 0.788409233093262 prediction 0.968783844662786 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17265567 chr1:17265567 nonsynonymous SNV 0.970 3 21 hm5C_associated_SNPs_129902 0 0 0 0 0 chromatin 0 0.50023167614909 0.576818466186524 0.00046335229817962 hm5C_site_49960 DeepMRMD:0.576818466186524;iRNA_m5C:0.00046335229817962 49961 chr11 22363120 22363120 1 + G C ACC 22363120 + 22363100 22363140 41 GGGAGACAATCGAGCTGACGGAGGATGGGAAGCCCCTAGAG GGGAGACAATCGAGCTGACGCAGGATGGGAAGCCCCTAGAG Direct Gain 0 0.984353526297606 0 0.878303289413452 prediction 0.968707052595212 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363120 chr11:22363120 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_129903 0 0 0 0 0 unknown 0 0.500231643921098 0.756606578826904 0.000463287842195514 hm5C_site_49961 DeepMRMD:0.756606578826904;iRNA_m5C:0.000463287842195514 49962 chr12 64845918 64845918 1 + G C rs141593283 64845918 + 64845898 64845938 41 CCGGAAGTGTCCTGAGTCTCGAGGAGGCCGCGGGAGCCCGC CCGGAAGTGTCCTGAGTCTCCAGGAGGCCGCGGGAGCCCGC Direct Gain 0 0.984154580132998 0 0.924030661582947 prediction 0.968309160265997 Functional Gain - TBK1 ENSG00000183735 UTR5 Human protein_coding chr12:64845918 chr12:64845918 . . 0 21 hm5C_associated_SNPs_129904 0 0 1 0 1 chromatin 0 0.500231643917205 0.848061323165894 0.000463287834409742 hm5C_site_49962 DeepMRMD:0.848061323165894;iRNA_m5C:0.000463287834409742 49963 chr8 23119205 23119205 1 + T C rs7361 23119205 + 23119185 23119225 41 CTTTGAGGGACTGGGGGACTTGGGGTAGGGGGACAGACGGG CTTTGAGGGACTGGGGGACTCGGGGTAGGGGGACAGACGGG Direct Gain 0 0.984106346707291 0 0.943965435028076 prediction 0.968212693414582 Functional Gain - CHMP7 ENSG00000147457 UTR3 Human protein_coding chr8:23119205 chr8:23119205 . . 0 21 hm5C_associated_SNPs_129905 0 0 1 0 0 Ribosome 0 0.500231643921092 0.887930870056152 0.000463287842184856 hm5C_site_49963 DeepMRMD:0.887930870056152;iRNA_m5C:0.000463287842184856 49964 chr11 55432966 55432966 1 + G C ESCA 55432966 + 55432946 55432986 41 GAGCATTTCTTTGGTGGTGTGGGGATCATCCTCCTCACTGT GAGCATTTCTTTGGTGGTGTCGGGATCATCCTCCTCACTGT Direct Gain 0 0.984000948094797 0 0.96937370300293 prediction 0.968001896189594 Functional Gain - OR4C6 ENSG00000181903 CDS Human protein_coding chr11:55432966 chr11:55432966 synonymous SNV . 0 21 hm5C_associated_SNPs_129906 0 0 0 0 0 unknown 0 0.500231643921918 0.93874740600586 0.000463287843835092 hm5C_site_49964 DeepMRMD:0.93874740600586;iRNA_m5C:0.000463287843835092 49965 chr12 124971065 124971065 1 + T C rs114258960 124971065 + 124971045 124971085 41 TGATGGAGCCGGGCGACAGGTGGGAGGCATAGTCGCGGGAG TGATGGAGCCGGGCGACAGGCGGGAGGCATAGTCGCGGGAG Direct Gain 0 0.98385326058705 0 0.904701232910156 prediction 0.967706521174099 Functional Gain - NCOR2 ENSG00000196498 CDS Human protein_coding chr12:124971065 chr12:124971065 nonsynonymous SNV 0.976 3 21 hm5C_associated_SNPs_129907 0 0 0 0 0 Cytosol 0 0.500231643921092 0.809402465820312 0.000463287842184856 hm5C_site_49965 DeepMRMD:0.809402465820312;iRNA_m5C:0.000463287842184856 49966 chr6 43251080 43251080 1 + C G COAD 43251080 - 43251060 43251100 41 GGGCTGGGGCCGCTCATGCTGAGGAGTGAGGGCAGCCAGGG GGGCTGGGGCCGCTCATGCTCAGGAGTGAGGGCAGCCAGGG Direct Gain 0 0.983711435049682 0 0.907194018363953 prediction 0.967422870099364 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43251080 chr6:43251080 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_129908 0 0 0 0 0 exosome 0 0.500232033599629 0.814388036727906 0.000464067199258844 hm5C_site_49966 DeepMRMD:0.814388036727906;iRNA_m5C:0.000464067199258844 49967 chr19 48216657 48216657 1 + C G rs753269 48216657 - 48216637 48216677 41 AGCCGGGTGGGGCCCGGAGCGGGGAGGACGGGAGGGAGGAC AGCCGGGTGGGGCCCGGAGCCGGGAGGACGGGAGGGAGGAC Direct Gain 0 0.983688161368058 0 0.951637983322144 prediction 0.967376322736116 Functional Gain - EHD2 ENSG00000268746 ncRNA_intronic Human lincRNA chr19:48216657 chr19:48216657 . . 0 21 hm5C_associated_SNPs_129909 0 0 0 0 0 Nucleus 0 0.50023174437599 0.903275966644288 0.000463488751980767 hm5C_site_49967 DeepMRMD:0.903275966644288;iRNA_m5C:0.000463488751980767 49968 chr11 1267602 1267602 1 + C G CESC 1267602 - 1267582 1267622 41 GCTGTAGTGCTGGGCTCTGTGAGGATCCAGGTGGTCCCTGG GCTGTAGTGCTGGGCTCTGTCAGGATCCAGGTGGTCCCTGG Direct Gain 0 0.983563655433015 0 0.96191143989563 prediction 0.967127310866029 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1267602 chr11:1267602 synonymous SNV . 0 21 hm5C_associated_SNPs_129910 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.92382287979126 0.000463287842184856 hm5C_site_49968 DeepMRMD:0.92382287979126;iRNA_m5C:0.000463287842184856 49969 chr10 134218285 134218285 1 + C G BLCA 134218285 - 134218265 134218305 41 GCTCGGGGCGGGTGGTCTCGGGGGGCTGAACCCCGCGGGCA GCTCGGGGCGGGTGGTCTCGCGGGGCTGAACCCCGCGGGCA Direct Gain 0 0.983520631398491 0 0.978366196155548 prediction 0.967041262796982 Functional Gain - PWWP2B ENSG00000171813 CDS Human protein_coding chr10:134218285 chr10:134218285 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_129911 0 0 0 0 0 chromatin 0 0.500231643918827 0.956732392311096 0.00046328783765448 hm5C_site_49969 DeepMRMD:0.956732392311096;iRNA_m5C:0.00046328783765448 49970 chr19 36357343 36357343 1 + A G BRCA 36357343 - 36357323 36357363 41 GGTGTGGGGAAGGCAGCATATGGGAAGGGGGGAGTCCCGGG GGTGTGGGGAAGGCAGCATACGGGAAGGGGGGAGTCCCGGG Direct Gain 0 0.983227060869569 0 0.895796895027161 prediction 0.966454121739137 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357343 chr19:36357343 synonymous SNV . 0 21 hm5C_associated_SNPs_129912 0 0 0 0 0 exosome 0 0.500231643921089 0.791593790054322 0.000463287842177307 hm5C_site_49970 DeepMRMD:0.791593790054322;iRNA_m5C:0.000463287842177307 49971 chr14 35515739 35515739 1 + A C rs200121612 35515739 + 35515719 35515759 41 GCCCTGTGGTGGCGACGACGATGGACCAGGAGCCAGTGGGC GCCCTGTGGTGGCGACGACGCTGGACCAGGAGCCAGTGGGC Direct Gain 0 0.982814906692081 0 0.787821173667908 prediction 0.965629813384161 Functional Gain - FAM177A1 ENSG00000151327 CDS Human protein_coding chr14:35515739 chr14:35515739 nonsynonymous SNV 0.433 1 21 hm5C_associated_SNPs_129913 0 0 1 0 2 Endoplasmic reticulum 0 0.500231643924838 0.575642347335816 0.000463287849676863 hm5C_site_49971 DeepMRMD:0.575642347335816;iRNA_m5C:0.000463287849676863 49972 chr1 1431178 1431178 1 + C G rs148302536 1431178 - 1431158 1431198 41 CCTACAACAGGGGGTGCCCTGGGGGGCAGAACGGCCGACCG CCTACAACAGGGGGTGCCCTCGGGGGCAGAACGGCCGACCG Direct Gain 0 0.982790045638104 0 0.992669582366943 prediction 0.965580091276208 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1431178 chr1:1431178 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_129914 0 0 0 0 0 Ribosome 0 0.500231643921093 0.985339164733886 0.0004632878421853 hm5C_site_49972 DeepMRMD:0.985339164733886;iRNA_m5C:0.0004632878421853 49973 chr15 43426123 43426123 1 + C G rs573311291 43426123 - 43426103 43426143 41 GGCGCAGGGTGCGGCCTCCTGGGGGGCGCGGGGCGCGGCAG GGCGCAGGGTGCGGCCTCCTCGGGGGCGCGGGGCGCGGCAG Direct Gain 0 0.982631097217785 0 0.98663604259491 prediction 0.96526219443557 Functional Gain - TMEM62 ENSG00000137842 CDS Human protein_coding chr15:43426123 chr15:43426123 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_129915 0 0 0 0 0 chromatin 0 0.500231643920992 0.97327208518982 0.00046328784198324 hm5C_site_49973 DeepMRMD:0.97327208518982;iRNA_m5C:0.00046328784198324 49974 chr17 656284 656284 1 + T C UCEC 656284 + 656264 656304 41 ACGTGAGAGCCAGGGCCAAGTGGGAGGCTTGGAGCGCGAAA ACGTGAGAGCCAGGGCCAAGCGGGAGGCTTGGAGCGCGAAA Direct Gain 0 0.982539623919303 0 0.934783577919006 prediction 0.965079247838606 Functional Gain - DBIL5P ENSG00000231784 ncRNA_exonic Human transcribed_unitary_pseudogene chr17:656284 chr17:656284 . . 0 21 hm5C_associated_SNPs_129916 0 0 0 0 0 unknown 0 0.500229084533747 0.869567155838012 0.00045816906749363 hm5C_site_49974 DeepMRMD:0.869567155838012;iRNA_m5C:0.00045816906749363 49975 chr15 76496319 76496319 1 + C G HNSC 76496319 - 76496299 76496339 41 GGGGAGAAGGGCCGGGCTCAGAGGACGGCTCCTCGCGGGCA GGGGAGAAGGGCCGGGCTCACAGGACGGCTCCTCGCGGGCA Direct Gain 0 0.982536824370365 0 0.907634019851685 prediction 0.96507364874073 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76496319 chr15:76496319 nonsynonymous SNV 0.030 2 21 hm5C_associated_SNPs_129917 0 0 0 0 0 Nucleus 0 0.500231643921095 0.81526803970337 0.000463287842190407 hm5C_site_49975 DeepMRMD:0.81526803970337;iRNA_m5C:0.000463287842190407 49976 chr9 22447645 22447645 1 + T C UCEC 22447645 + 22447625 22447665 41 CCCTGCGGCGGGGGCTGCGCTGGGACTGGGTGCCTTGAGAC CCCTGCGGCGGGGGCTGCGCCGGGACTGGGTGCCTTGAGAC Direct Gain 0 0.982419425403289 0 0.848397731781006 prediction 0.964838850806578 Functional Gain - DMRTA1 ENSG00000176399 CDS Human protein_coding chr9:22447645 chr9:22447645 nonsynonymous SNV 0.023 1 21 hm5C_associated_SNPs_129918 0 0 0 0 1 exosome 0 0.500231647361269 0.696795463562012 0.00046329472253781 hm5C_site_49976 DeepMRMD:0.696795463562012;iRNA_m5C:0.00046329472253781 49977 chr3 12858353 12858353 1 + C G LUSC 12858353 - 12858333 12858373 41 GCTGTAGGTCAAGCTGTAGTGGGGATACGGCCACCAGCGTA GCTGTAGGTCAAGCTGTAGTCGGGATACGGCCACCAGCGTA Direct Gain 0 0.982417850926012 0 0.943570971488953 prediction 0.964835701852024 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12858353 chr3:12858353 nonsynonymous SNV 0.050 4 21 hm5C_associated_SNPs_129919 0 0 0 0 0 chromatin 0 0.500231643921093 0.887141942977906 0.000463287842185078 hm5C_site_49977 DeepMRMD:0.887141942977906;iRNA_m5C:0.000463287842185078 49978 chr5 175875421 175875421 1 + G C rs184408647 175875421 + 175875401 175875441 41 GCGGCAAAATGGCGGCGCCTGAGGAGCGGGATCTAACCCAG GCGGCAAAATGGCGGCGCCTCAGGAGCGGGATCTAACCCAG Direct Gain 0 0.982410816912893 0 0.896212220191956 prediction 0.964821633825786 Functional Gain - FAF2 ENSG00000113194 CDS Human protein_coding chr5:175875421 chr5:175875421 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_129920 0 0 1 0 1 Endoplasmic reticulum 0 0.500231643921093 0.792424440383912 0.000463287842186855 hm5C_site_49978 DeepMRMD:0.792424440383912;iRNA_m5C:0.000463287842186855 49979 chr7 129710524 129710524 1 + G C rs1062154 129710524 + 129710504 129710544 41 GGACAGGAACCGCCGGAGGGGAGGAGGCGCCGCCGGCGCTG GGACAGGAACCGCCGGAGGGCAGGAGGCGCCGCCGGCGCTG Direct Gain 0 0.982358105082132 0 0.805779099464417 prediction 0.964716210164265 Functional Gain - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129710524 chr7:129710524 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_129921 0 0 1 0 0 Cytosol 0 0.500231643549137 0.611558198928834 0.000463287098274145 hm5C_site_49979 DeepMRMD:0.611558198928834;iRNA_m5C:0.000463287098274145 49980 chr16 3063906 3063906 1 + C G BLCA 3063906 - 3063886 3063926 41 GGCGGGGGGCACGTGCAGCAGAGGAGCCCCCCGCCCAGCAT GGCGGGGGGCACGTGCAGCACAGGAGCCCCCCGCCCAGCAT Direct Gain 0 0.982005494597425 0 0.861117124557495 prediction 0.96401098919485 Functional Gain - CLDN9 ENSG00000213937 CDS Human protein_coding chr16:3063906 chr16:3063906 synonymous SNV . 0 21 hm5C_associated_SNPs_129922 0 0 0 0 0 exosome 0 0.500231643921092 0.72223424911499 0.000463287842184856 hm5C_site_49980 DeepMRMD:0.72223424911499;iRNA_m5C:0.000463287842184856 49981 chr6 57037117 57037117 1 + G C rs532204254 57037117 + 57037097 57037137 41 TTCGGGTAGTTCCTGGGTCCGGGGAGCAGACGATCCGCTAG TTCGGGTAGTTCCTGGGTCCCGGGAGCAGACGATCCGCTAG Direct Gain 0 0.981963762070955 0 0.944064974784851 prediction 0.963927524141911 Functional Gain - BAG2 ENSG00000226803 ncRNA_exonic Human antisense chr6:57037117 chr6:57037117 . . 0 21 hm5C_associated_SNPs_129923 0 0 1 0 0 Ribosome 0 0.500231643961032 0.888129949569702 0.000463287922064959 hm5C_site_49981 DeepMRMD:0.888129949569702;iRNA_m5C:0.000463287922064959 49982 chr13 42031560 42031560 1 + G C rs548944907 42031560 + 42031540 42031580 41 GCGTGGCGAGGGCGGTGCCTGGGGGCAGGGGCCTCCTCGGA GCGTGGCGAGGGCGGTGCCTCGGGGCAGGGGCCTCCTCGGA Direct Gain 0 0.98191287025135 0 0.962284982204437 prediction 0.9638257405027 Functional Gain - RGCC ENSG00000102760 upstream Human protein_coding chr13:42031560 chr13:42031560 . . 0 21 hm5C_associated_SNPs_129924 0 0 0 0 0 Nucleus 0 0.500231643921093 0.924569964408874 0.000463287842186633 hm5C_site_49982 DeepMRMD:0.924569964408874;iRNA_m5C:0.000463287842186633 49983 chr7 76112377 76112377 1 + T G GBM 76112377 - 76112357 76112397 41 GGTAGAGGGGCTGGCTCCCCAGGGAAGGAGGAGCTGCGCCC GGTAGAGGGGCTGGCTCCCCCGGGAAGGAGGAGCTGCGCCC Direct Gain 0 0.981857704916959 0 0.972070276737213 prediction 0.963715409833919 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76112377 chr7:76112377 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_129925 0 0 0 0 0 Nucleus 0 0.500231643921092 0.944140553474426 0.000463287842184856 hm5C_site_49983 DeepMRMD:0.944140553474426;iRNA_m5C:0.000463287842184856 49984 chr2 224822285 224822285 1 + G C CESC 224822285 + 224822265 224822305 41 CCTCCGGTTCGGGGAGTGAAGAAGGGATTCCGCGCCGCCTT CCTCCGGTTCGGGGAGTGAACAAGGGATTCCGCGCCGCCTT Direct Gain 0 0.981750028248229 0 0.934934735298157 prediction 0.963500056496459 Functional Gain - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224822285 chr2:224822285 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_129926 0 0 1 0 1 Ribosome 0 0.500231643921091 0.869869470596314 0.00046328784218197 hm5C_site_49984 DeepMRMD:0.869869470596314;iRNA_m5C:0.00046328784218197 49985 chr19 1254389 1254389 1 + C G rs373111260 1254389 - 1254369 1254409 41 GGGACGGGCTGGTGGGCACCGGGGGGACTCGGGCGGCACTG GGGACGGGCTGGTGGGCACCCGGGGGACTCGGGCGGCACTG Direct Gain 0 0.98172842162642 0 0.978146851062775 prediction 0.963456843252841 Functional Gain - MIDN ENSG00000167470 CDS Human protein_coding chr19:1254389 chr19:1254389 nonsynonymous SNV 0.004 1 21 hm5C_associated_SNPs_129927 0 0 0 0 0 chromatin 0 0.500219620878659 0.95629370212555 0.000439241757318687 hm5C_site_49985 DeepMRMD:0.95629370212555;iRNA_m5C:0.000439241757318687 49986 chr16 84733560 84733560 1 + C G rs181454174 84733560 - 84733540 84733580 41 GGCCGCGCGCCGCGGGGCGCGGGGAGGCCGGCCCGCTGCTG GGCCGCGCGCCGCGGGGCGCCGGGAGGCCGGCCCGCTGCTG Direct Gain 0 0.981719264230978 0 0.982339024543762 prediction 0.963438528461957 Functional Gain - USP10 ENSG00000103194 upstream Human protein_coding chr16:84733560 chr16:84733560 . . 0 21 hm5C_associated_SNPs_129928 0 0 0 0 0 Cytosol 0 0.500231643921072 0.964678049087524 0.000463287842144666 hm5C_site_49986 DeepMRMD:0.964678049087524;iRNA_m5C:0.000463287842144666 49987 chr19 7565912 7565912 1 + A G rs75256404 7565912 - 7565892 7565932 41 CGGTCCCAGCGCGGGTCCATTGGGAAAAGCAGCGCGGGCGG CGGTCCCAGCGCGGGTCCATCGGGAAAAGCAGCGCGGGCGG Direct Gain 0 0.98160020550712 0 0.975379824638367 prediction 0.96320041101424 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7565912 chr19:7565912 synonymous SNV . 0 21 hm5C_associated_SNPs_129929 0 0 0 0 0 unknown 0 0.500231643921088 0.950759649276734 0.000463287842176863 hm5C_site_49987 DeepMRMD:0.950759649276734;iRNA_m5C:0.000463287842176863 49988 chr19 36640675 36640675 1 + T C THYM 36640675 + 36640655 36640695 41 GGCAAAGGGGCTGGTGCTCTTGGGGTTCCCTGTCCTCACTC GGCAAAGGGGCTGGTGCTCTCGGGGTTCCCTGTCCTCACTC Direct Gain 0 0.981490653716873 0 0.989599466323853 prediction 0.962981307433747 Functional Gain - CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36640675 chr19:36640675 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_129930 0 0 1 0 0 Ribosome 0 0.500231643921092 0.979198932647706 0.000463287842184856 hm5C_site_49988 DeepMRMD:0.979198932647706;iRNA_m5C:0.000463287842184856 49989 chr4 52938174 52938174 1 + G C OV 52938174 + 52938154 52938194 41 GGTCAGAGCCTTGGAGCTTGGAGGAGCGGAAGCGTGAGCAG GGTCAGAGCCTTGGAGCTTGCAGGAGCGGAAGCGTGAGCAG Direct Gain 0 0.981486234486365 0 0.857598423957825 prediction 0.962972468972731 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52938174 chr4:52938174 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_129931 0 0 0 0 1 cytosol 0 0.500231644892347 0.71519684791565 0.000463289784693233 hm5C_site_49989 DeepMRMD:0.71519684791565;iRNA_m5C:0.000463289784693233 49990 chr3 49662661 49662661 1 + C G BLCA 49662661 - 49662641 49662681 41 GCTGGGAAGGGGGGCGATCTGAGGGACGGAGTAGGGTGATG GCTGGGAAGGGGGGCGATCTCAGGGACGGAGTAGGGTGATG Direct Gain 0 0.981235766276703 0 0.912023663520813 prediction 0.962471532553406 Functional Gain - BSN ENSG00000164061 CDS Human protein_coding chr3:49662661 chr3:49662661 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_129932 0 0 0 0 0 chromatin 0 0.50023163988231 0.824047327041626 0.000463279764620683 hm5C_site_49990 DeepMRMD:0.824047327041626;iRNA_m5C:0.000463279764620683 49991 chr8 16885148 16885148 1 + A G rs559381726 16885148 - 16885128 16885168 41 GTCTCCTTGGCAGCCGCCACTGGGATGGGCAGCATCCCCCG GTCTCCTTGGCAGCCGCCACCGGGATGGGCAGCATCCCCCG Direct Gain 0 0.981216927690362 0 0.962478518486023 prediction 0.962433855380723 Functional Gain - MICU3 ENSG00000155970 CDS Human protein_coding chr8:16885148 chr8:16885148 synonymous SNV . 0 21 hm5C_associated_SNPs_129933 0 0 0 0 0 cytosol 0 0.500231640888375 0.924957036972046 0.000463281776749147 hm5C_site_49991 DeepMRMD:0.924957036972046;iRNA_m5C:0.000463281776749147 49992 chr2 74274540 74274540 1 + C G rs200362611 74274540 - 74274520 74274560 41 CAGGGGATGGGGCCGGGGCCGGGGAGGAAGAGGGTGCCTCC CAGGGGATGGGGCCGGGGCCCGGGAGGAAGAGGGTGCCTCC Direct Gain 0 0.981149924019664 0 0.9631267786026 prediction 0.962299848039327 Functional Gain - TET3 ENSG00000187605 CDS Human protein_coding chr2:74274540 chr2:74274540 nonsynonymous SNV 0.238 1 21 hm5C_associated_SNPs_129934 0 0 0 0 0 Cytosol 0 0.500231644510706 0.9262535572052 0.000463289021411128 hm5C_site_49992 DeepMRMD:0.9262535572052;iRNA_m5C:0.000463289021411128 49993 chr7 139877088 139877088 1 + T C rs553225032 139877088 + 139877068 139877108 41 CGTGAGGACACGCGCGGTGGTGGCGGTGGCGGCGGGCGCGC CGTGAGGACACGCGCGGTGGCGGCGGTGGCGGCGGGCGCGC Direct Gain 0 0.981148912249467 0 0.862499833106995 prediction 0.962297824498935 Functional Gain - JHDM1D-AS1 ENSG00000260231 ncRNA_exonic Human antisense chr7:139877088 chr7:139877088 . . 0 21 hm5C_associated_SNPs_129935 0 0 1 0 0 unknown 0 0.500231643926452 0.72499966621399 0.000463287852903616 hm5C_site_49993 DeepMRMD:0.72499966621399;iRNA_m5C:0.000463287852903616 49994 chr1 152759987 152759987 1 + G C LUSC 152759987 + 152759967 152760007 41 TGGGGGCTGCTGCAGCTCTGGGGGAGGTGGCTGCTGCCTGA TGGGGGCTGCTGCAGCTCTGCGGGAGGTGGCTGCTGCCTGA Direct Gain 0 0.981021164937021 0 0.961240530014038 prediction 0.962042329874043 Functional Gain - LCE1E ENSG00000186226 CDS Human protein_coding chr1:152759987 chr1:152759987 nonsynonymous SNV 0.892 2 21 hm5C_associated_SNPs_129936 0 0 0 0 0 unknown 0 0.50023164392127 0.922481060028076 0.000463287842540794 hm5C_site_49994 DeepMRMD:0.922481060028076;iRNA_m5C:0.000463287842540794 49995 chr1 178062936 178062936 1 + A G rs557601483 178062936 - 178062916 178062956 41 GGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGCGGCGGCGG GGTGGCGGTGGCGGTGGCGGCGGCGGTGGCGGCGGCGGCGG Direct Gain 0 0.981009865528993 0 0.950722575187683 prediction 0.962019731057985 Functional Gain - RASAL2-AS1 ENSG00000224687 ncRNA_exonic Human lincRNA chr1:178062936 chr1:178062936 . . 0 21 hm5C_associated_SNPs_129937 0 0 0 0 0 unknown 0 0.500231643921092 0.901445150375366 0.000463287842184856 hm5C_site_49995 DeepMRMD:0.901445150375366;iRNA_m5C:0.000463287842184856 49996 chr19 7682917 7682917 1 + A G UCEC 7682917 - 7682897 7682937 41 GGGGGTGCCGCCGCCCTTCTTGGGAGTGGTGGGTTTCTTGC GGGGGTGCCGCCGCCCTTCTCGGGAGTGGTGGGTTTCTTGC Direct Gain 0 0.980975327477871 0 0.974616408348083 prediction 0.961950654955742 Functional Gain - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682917 chr19:7682917 nonsynonymous SNV 0.955 4 21 hm5C_associated_SNPs_129938 0 0 0 0 0 nucleus 0 0.500231643921092 0.949232816696166 0.000463287842184856 hm5C_site_49996 DeepMRMD:0.949232816696166;iRNA_m5C:0.000463287842184856 49997 chrX 77359686 77359686 1 + G C rs377286545 77359686 + 77359666 77359706 41 GAGAGCAGCGGCCGGGAAGGGGCGGTGCGGGAGGCGGGGTG GAGAGCAGCGGCCGGGAAGGCGCGGTGCGGGAGGCGGGGTG Direct Gain 0 0.980832112388756 0 0.885974407196045 prediction 0.961664224777512 Functional Gain - PGK1 ENSG00000102144 UTR5 Human protein_coding chrX:77359686 chrX:77359686 . . 0 21 hm5C_associated_SNPs_129939 0 0 0 0 0 Ribosome 0 0.500224010239766 0.77194881439209 0.00044802047953274 hm5C_site_49997 DeepMRMD:0.77194881439209;iRNA_m5C:0.00044802047953274 49998 chr8 11660575 11660575 1 + C G rs529873557 11660575 - 11660555 11660595 41 AGGGGGAAGGCTCGAGGAAAGGGGGACGGGAACACCCAGGC AGGGGGAAGGCTCGAGGAAACGGGGACGGGAACACCCAGGC Direct Gain 0 0.980807483486495 0 0.953667342662811 prediction 0.96161496697299 Functional Gain - FDFT1 ENSG00000079459 UTR5 Human protein_coding chr8:11660575 chr8:11660575 . . 0 21 hm5C_associated_SNPs_129940 0 0 0 0 0 Cytosol 0 0.500231643921092 0.907334685325622 0.000463287842184856 hm5C_site_49998 DeepMRMD:0.907334685325622;iRNA_m5C:0.000463287842184856 49999 chr9 12775861 12775861 1 + T C BRCA 12775861 + 12775841 12775881 41 TGCGGGGGGAGCGGTGGTGGTGGCGGCGGCGGCGGCGGCTG TGCGGGGGGAGCGGTGGTGGCGGCGGCGGCGGCGGCGGCTG Direct Gain 0 0.980795433326629 0 0.92467737197876 prediction 0.961590866653259 Functional Gain - LURAP1L ENSG00000153714 CDS Human protein_coding chr9:12775861 chr9:12775861 synonymous SNV . 0 21 hm5C_associated_SNPs_129941 0 0 1 0 0 nucleus 0 0.500231643921302 0.84935474395752 0.000463287842604521 hm5C_site_49999 DeepMRMD:0.84935474395752;iRNA_m5C:0.000463287842604521 50000 chrX 117960489 117960489 1 + T C rs774160574 117960489 + 117960469 117960509 41 TGGGAAAACTGGGGTGGGGGTGGGGGTGGGACTTCTAACTG TGGGAAAACTGGGGTGGGGGCGGGGGTGGGACTTCTAACTG Direct Gain 0 0.980790234150446 0 0.939514935016632 prediction 0.961580468300891 Functional Gain - ZCCHC12 ENSG00000174460 UTR3 Human protein_coding chrX:117960489 chrX:117960489 . . 0 21 hm5C_associated_SNPs_129942 0 0 1 0 0 exosome 0 0.500231643921092 0.879029870033264 0.000463287842184856 hm5C_site_50000 DeepMRMD:0.879029870033264;iRNA_m5C:0.000463287842184856 50001 chr12 72148938 72148938 1 + G C rs200184881 72148938 + 72148918 72148958 41 GGCCGGCGGCGGCGGCGGCGGGGCGGCGGCGGCGGGCCGAG GGCCGGCGGCGGCGGCGGCGCGGCGGCGGCGGCGGGCCGAG Direct Gain 0 0.980743889804191 0 0.76660430431366 prediction 0.961487779608382 Functional Gain - RAB21 ENSG00000080371 CDS Human protein_coding chr12:72148938 chr12:72148938 nonsynonymous SNV 0.116 0 21 hm5C_associated_SNPs_129943 0 0 1 0 0 Ribosome 0 0.500231643921043 0.53320860862732 0.000463287842086491 hm5C_site_50001 DeepMRMD:0.53320860862732;iRNA_m5C:0.000463287842086491 50002 chr12 90103532 90103532 1 + G C rs55803607 90103532 + 90103512 90103552 41 GAGGGAGCGGCGGGGGAGGAGGGGGTGGCCAGGCGCGCGGG GAGGGAGCGGCGGGGGAGGACGGGGTGGCCAGGCGCGCGGG Direct Gain 0 0.980668432444133 0 0.966710448265076 prediction 0.961336864888267 Functional Gain - ATP2B1-AS1 ENSG00000271614 ncRNA_exonic Human lincRNA chr12:90103532 chr12:90103532 . . 0 21 hm5C_associated_SNPs_129944 0 0 0 0 0 unknown 0 0.500231645930922 0.933420896530152 0.000463291861844128 hm5C_site_50002 DeepMRMD:0.933420896530152;iRNA_m5C:0.000463291861844128 50003 chr11 123886974 123886974 1 + T C rs144615790 123886974 + 123886954 123886994 41 CTGCGGATCCGCACCTCAGATGGGAGGCGCAGAGCCTTTCA CTGCGGATCCGCACCTCAGACGGGAGGCGCAGAGCCTTTCA Direct Gain 0 0.98060765480739 0 0.881545841693878 prediction 0.961215309614781 Functional Gain - OR10G4 ENSG00000254737 CDS Human protein_coding chr11:123886974 chr11:123886974 synonymous SNV . 0 21 hm5C_associated_SNPs_129945 0 0 0 0 0 unknown 0 0.500231643848921 0.763091683387756 0.00046328769784254 hm5C_site_50003 DeepMRMD:0.763091683387756;iRNA_m5C:0.00046328769784254 50004 chr3 126137511 126137511 1 + G C LGG 126137511 + 126137491 126137531 41 TGGAGACGCTGGCGACCAAAGAGGAGGCCAGGCTGGAGCGG TGGAGACGCTGGCGACCAAACAGGAGGCCAGGCTGGAGCGG Direct Gain 0 0.98057292912032 0 0.894630432128906 prediction 0.961145858240641 Functional Gain - CFAP100 ENSG00000163885 CDS Human protein_coding chr3:126137511 chr3:126137511 nonsynonymous SNV 0.436 4 21 hm5C_associated_SNPs_129946 0 0 0 0 1 nucleus 0 0.500231643921093 0.789260864257812 0.0004632878421853 hm5C_site_50004 DeepMRMD:0.789260864257812;iRNA_m5C:0.0004632878421853 50005 chrX 153608140 153608140 1 + C G BLCA 153608140 - 153608120 153608160 41 TCTCACCAGAGAAGCTATAAGAGGAGGCGGCGGACGAGCTG TCTCACCAGAGAAGCTATAACAGGAGGCGGCGGACGAGCTG Direct Gain 0 0.980542983230586 0 0.810907959938049 prediction 0.961085966461173 Functional Gain - EMD ENSG00000102119 CDS Human protein_coding chrX:153608140 chrX:153608140 nonsynonymous SNV 0.023 2 21 hm5C_associated_SNPs_129947 0 0 0 0 0 Ribosome 0 0.500231643927873 0.621815919876098 0.000463287855745564 hm5C_site_50005 DeepMRMD:0.621815919876098;iRNA_m5C:0.000463287855745564 50006 chr1 152648709 152648709 1 + T G OV 152648709 - 152648689 152648729 41 GACGGGGCCTGTGGTGGCTCAGGGAGCAGCCACCAGCCCCA GACGGGGCCTGTGGTGGCTCCGGGAGCAGCCACCAGCCCCA Direct Gain 0 0.980537757097292 0 0.966754555702209 prediction 0.961075514194584 Functional Gain - LCE2C ENSG00000187180 CDS Human protein_coding chr1:152648709 chr1:152648709 nonsynonymous SNV 0.985 2 21 hm5C_associated_SNPs_129948 0 0 0 0 0 exosome 0 0.500231643921083 0.933509111404418 0.00046328784216576 hm5C_site_50006 DeepMRMD:0.933509111404418;iRNA_m5C:0.00046328784216576 50007 chr20 2097550 2097550 1 + C G BLCA 2097550 - 2097530 2097570 41 AGTCCAAAGTCGGCCACTTTGAGGATGGGGGTGCCAGACCG AGTCCAAAGTCGGCCACTTTCAGGATGGGGGTGCCAGACCG Direct Gain 0 0.980527442389645 0 0.966299772262573 prediction 0.961054884779291 Functional Gain - STK35 ENSG00000125834 CDS Human protein_coding chr20:2097550 chr20:2097550 synonymous SNV . 0 21 hm5C_associated_SNPs_129949 0 0 0 0 0 Ribosome 0 0.500231642189192 0.932599544525146 0.00046328437838361 hm5C_site_50007 DeepMRMD:0.932599544525146;iRNA_m5C:0.00046328437838361 50008 chr13 27255402 27255402 1 + C G rs151322145 27255402 - 27255382 27255422 41 GGACCCCTCTGGGGCCTGAGGGGGAGGCGGGGGGGGCGGCT GGACCCCTCTGGGGCCTGAGCGGGAGGCGGGGGGGGCGGCT Direct Gain 0 0.980411595179073 0 0.963490545749664 prediction 0.960823190358145 Functional Gain - WASF3 ENSG00000132970 CDS Human protein_coding chr13:27255402 chr13:27255402 nonsynonymous SNV 0.007 0 21 hm5C_associated_SNPs_129950 0 0 0 0 0 cytosol 0 0.500231643921092 0.926981091499328 0.000463287842184856 hm5C_site_50008 DeepMRMD:0.926981091499328;iRNA_m5C:0.000463287842184856 50009 chr6 30139765 30139765 1 + C G BLCA 30139765 - 30139745 30139785 41 CCTGCCAGCGGTGGCGCCCGGAGGAGAAGCCCGGGAAGCCC CCTGCCAGCGGTGGCGCCCGCAGGAGAAGCCCGGGAAGCCC Direct Gain 0 0.980305295596643 0 0.956280589103699 prediction 0.960610591193286 Functional Gain - TRIM15 ENSG00000204610 CDS Human protein_coding chr6:30139765 chr6:30139765 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_129951 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643920183 0.912561178207398 0.000463287840365423 hm5C_site_50009 DeepMRMD:0.912561178207398;iRNA_m5C:0.000463287840365423 50010 chr19 42799089 42799089 1 + A G COAD 42799089 - 42799069 42799109 41 AGCTCCAGGGGGCTGCTCCGTGGGAGTGGCAGCCTGCATGA AGCTCCAGGGGGCTGCTCCGCGGGAGTGGCAGCCTGCATGA Direct Gain 0 0.980253809846768 0 0.929685831069946 prediction 0.960507619693537 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42799089 chr19:42799089 nonsynonymous SNV 0.990 2 21 hm5C_associated_SNPs_129952 0 0 0 0 0 Cytosol 0 0.500231643921607 0.859371662139892 0.000463287843213811 hm5C_site_50010 DeepMRMD:0.859371662139892;iRNA_m5C:0.000463287843213811 50011 chr17 6904970 6904970 1 + C G ESCA 6904970 - 6904950 6904990 41 GCCAGGCAAGTGGGGGGTCTGAGGGCAGGAACAGTGTTGGG GCCAGGCAAGTGGGGGGTCTCAGGGCAGGAACAGTGTTGGG Direct Gain 0 0.980076806660921 0 0.866040706634521 prediction 0.960153613321842 Functional Gain - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6904970 chr17:6904970 stopgain 0.975 0 21 hm5C_associated_SNPs_129953 0 0 0 0 0 Cytosol 0 0.500231643921092 0.732081413269042 0.000463287842184856 hm5C_site_50011 DeepMRMD:0.732081413269042;iRNA_m5C:0.000463287842184856 50012 chr6 28253391 28253391 1 + T C UCEC 28253391 + 28253371 28253411 41 CAGAATATCAAGGAGTCTCTTTGGAGTGTCAGAGCCTCCAG CAGAATATCAAGGAGTCTCTCTGGAGTGTCAGAGCCTCCAG Direct Gain 0 0.980032463094598 0 0.922921597957611 prediction 0.960064926189197 Functional Gain - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28253391 chr6:28253391 synonymous SNV . 0 21 hm5C_associated_SNPs_129954 0 0 1 0 2 nucleoplasm 0 0.500230464277046 0.845843195915222 0.000460928554091744 hm5C_site_50012 DeepMRMD:0.845843195915222;iRNA_m5C:0.000460928554091744 50013 chr4 7691259 7691259 1 + A G COAD 7691259 - 7691239 7691279 41 TGTGCACGGTGCCTGATACGTAGGGGTTGTCTGCCCAGCGC TGTGCACGGTGCCTGATACGCAGGGGTTGTCTGCCCAGCGC Direct Gain 0 0.979987687835157 0 0.960588932037354 prediction 0.959975375670315 Functional Gain - SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7691259 chr4:7691259 nonsynonymous SNV 0.992 4 21 hm5C_associated_SNPs_129955 0 0 0 0 0 nucleus 0 0.500126144286026 0.921177864074708 0.000252288572051285 hm5C_site_50013 DeepMRMD:0.921177864074708;iRNA_m5C:0.000252288572051285 50014 chr2 105858885 105858885 1 + C G rs142497509 105858885 - 105858865 105858905 41 ACCACGTAGGCGCGGTCAGCGGGGAGCTCCGTGTAGCCCAG ACCACGTAGGCGCGGTCAGCCGGGAGCTCCGTGTAGCCCAG Direct Gain 0 0.979985653315593 0 0.946442067623138 prediction 0.959971306631186 Functional Gain - GPR45 ENSG00000135973 CDS Human protein_coding chr2:105858885 chr2:105858885 synonymous SNV . 0 21 hm5C_associated_SNPs_129956 0 0 0 0 0 unknown 0 0.500231088017227 0.892884135246276 0.000462176034453421 hm5C_site_50014 DeepMRMD:0.892884135246276;iRNA_m5C:0.000462176034453421 50015 chr5 68485511 68485511 1 + G C ESCA 68485511 + 68485491 68485531 41 CGACGAGCCCGCGGACTCCGGAGGGGAAGGCCGGGCAGGCG CGACGAGCCCGCGGACTCCGCAGGGGAAGGCCGGGCAGGCG Direct Gain 0 0.979876597176133 0 0.899631142616272 prediction 0.959753194352265 Functional Gain - CENPH ENSG00000153044 CDS Human protein_coding chr5:68485511 chr5:68485511 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_129957 0 0 1 0 1 Ribosome 0 0.500231630296084 0.799262285232544 0.000463260592167725 hm5C_site_50015 DeepMRMD:0.799262285232544;iRNA_m5C:0.000463260592167725 50016 chr12 75784898 75784898 1 + T C BLCA 75784898 + 75784878 75784918 41 TGTCAGCGGCCGGTGGACCATGGAGGCCGCAAGGCCCTTCG TGTCAGCGGCCGGTGGACCACGGAGGCCGCAAGGCCCTTCG Direct Gain 0 0.979754231072506 0 0.954314351081848 prediction 0.959508462145011 Functional Gain - GLIPR1L2 ENSG00000180481 CDS Human protein_coding chr12:75784898 chr12:75784898 nonsynonymous SNV 0.738 4 21 hm5C_associated_SNPs_129958 0 0 0 0 0 exosome 0 0.500231644007855 0.908628702163696 0.000463288015709606 hm5C_site_50016 DeepMRMD:0.908628702163696;iRNA_m5C:0.000463288015709606 50017 chr19 7682939 7682939 1 + A G UCEC 7682939 - 7682919 7682959 41 GACCGCCCGGGTGGGGCTATTTGGGGGTGCCGCCGCCCTTC GACCGCCCGGGTGGGGCTATCTGGGGGTGCCGCCGCCCTTC Direct Gain 0 0.97972183838177 0 0.935806155204773 prediction 0.95944367676354 Functional Gain - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7682939 chr19:7682939 nonsynonymous SNV 0.987 4 21 hm5C_associated_SNPs_129959 0 0 1 0 0 nucleus 0 0.500231643914758 0.871612310409546 0.000463287829516545 hm5C_site_50017 DeepMRMD:0.871612310409546;iRNA_m5C:0.000463287829516545 50018 chr6 170190418 170190418 1 + T G rs3823467 170190418 - 170190398 170190438 41 CCCCTGGCCGCTGCTTTACCAGGGAGCGCCACCCCGTGCCC CCCCTGGCCGCTGCTTTACCCGGGAGCGCCACCCCGTGCCC Direct Gain 0 0.979686249646474 0 0.964119791984558 prediction 0.959372499292949 Functional Gain - LINC00242;LINC00574 ENSG00000229214;ENSG00000231690 ncRNA_exonic Human other chr6:170190418 chr6:170190418 . . 0 21 hm5C_associated_SNPs_129960 0 0 1 0 0 unknown 0 0.500231643921093 0.928239583969116 0.000463287842185744 hm5C_site_50018 DeepMRMD:0.928239583969116;iRNA_m5C:0.000463287842185744 50019 chr3 197509952 197509952 1 + T C rs558735280 197509952 + 197509932 197509972 41 AATTAAAGTTCAGGCATTTATGGGGAGAAAAGGCCCTCCCC AATTAAAGTTCAGGCATTTACGGGGAGAAAAGGCCCTCCCC Direct Gain 0 0.979624392530159 0 0.95198380947113 prediction 0.959248785060318 Functional Gain - FYTTD1 ENSG00000122068 UTR3 Human protein_coding chr3:197509952 chr3:197509952 . . 0 21 hm5C_associated_SNPs_129961 0 0 1 0 0 Ribosome 0 0.500231643921092 0.90396761894226 0.000463287842184856 hm5C_site_50019 DeepMRMD:0.90396761894226;iRNA_m5C:0.000463287842184856 50020 chr8 117779003 117779003 1 + T C COAD 117779003 + 117778983 117779023 41 GCAGCTGCCCCGCTACCTCATGGGGGAGACGCAGCTGTGCA GCAGCTGCCCCGCTACCTCACGGGGGAGACGCAGCTGTGCA Direct Gain 0 0.979495207696668 0 0.957830786705017 prediction 0.958990415393337 Functional Gain - UTP23 ENSG00000147679 CDS Human protein_coding chr8:117779003 chr8:117779003 nonsynonymous SNV 0.925 1 21 hm5C_associated_SNPs_129962 0 0 1 0 1 chromatin 0 0.500231643472657 0.915661573410034 0.000463286945314723 hm5C_site_50020 DeepMRMD:0.915661573410034;iRNA_m5C:0.000463286945314723 50021 chr18 67956148 67956148 1 + G C rs111974161 67956148 + 67956128 67956168 41 GCGGGCCCGAGTAGTGGACGGGGGGCGGCCCGCTCGGCTCC GCGGGCCCGAGTAGTGGACGCGGGGCGGCCCGCTCGGCTCC Direct Gain 0 0.979418978734678 0 0.979597330093384 prediction 0.958837957469355 Functional Gain - SOCS6 ENSG00000170677 UTR5 Human protein_coding chr18:67956148 chr18:67956148 . . 0 21 hm5C_associated_SNPs_129963 0 0 1 0 0 Ribosome 0 0.500231231028391 0.959194660186768 0.000462462056782575 hm5C_site_50021 DeepMRMD:0.959194660186768;iRNA_m5C:0.000462462056782575 50022 chr2 189156630 189156630 1 + C G rs10168305 189156630 - 189156610 189156650 41 GGCAGCTGGGACGCGGGGCTGGGGACTCCGGGTCGCTCCCG GGCAGCTGGGACGCGGGGCTCGGGACTCCGGGTCGCTCCCG Direct Gain 0 0.979343740656636 0 0.956833362579346 prediction 0.958687481313272 Functional Gain - GULP1 ENSG00000144366 UTR5 Human protein_coding chr2:189156630 chr2:189156630 . . 0 21 hm5C_associated_SNPs_129964 0 0 0 0 0 Ribosome 0 0.500231643915329 0.913666725158692 0.000463287830657633 hm5C_site_50022 DeepMRMD:0.913666725158692;iRNA_m5C:0.000463287830657633 50023 chr13 20532940 20532940 1 + G C rs536011658 20532940 + 20532920 20532960 41 CGCCGAAGGGGGGTGGGCCGGGGGAGGGGAGGTTCGTTCCG CGCCGAAGGGGGGTGGGCCGCGGGAGGGGAGGTTCGTTCCG Direct Gain 0 0.979307452824012 0 0.923740983009338 prediction 0.958614905648024 Functional Gain - ZMYM2 ENSG00000121741 UTR5 Human protein_coding chr13:20532940 chr13:20532940 . . 0 21 hm5C_associated_SNPs_129965 0 0 1 0 1 Nucleus 0 0.500232396466255 0.847481966018676 0.000464792932509006 hm5C_site_50023 DeepMRMD:0.847481966018676;iRNA_m5C:0.000464792932509006 50024 chr12 5020569 5020569 1 + G C LUAD 5020569 + 5020549 5020589 41 CGGTGATGTCTGGGGAGAACGTGGACGAGGCTTCGGCCGCC CGGTGATGTCTGGGGAGAACCTGGACGAGGCTTCGGCCGCC Direct Gain 0 0.979219804883475 0 0.908788204193115 prediction 0.95843960976695 Functional Gain - KCNA1 ENSG00000111262 CDS Human protein_coding chr12:5020569 chr12:5020569 nonsynonymous SNV 0.991 1 21 hm5C_associated_SNPs_129966 0 0 0 0 0 unknown 0 0.500231659017145 0.81757640838623 0.000463318034289895 hm5C_site_50024 DeepMRMD:0.81757640838623;iRNA_m5C:0.000463318034289895 50025 chr4 25678124 25678124 1 + A G rs116673562 25678124 - 25678104 25678144 41 TCTGGAAGCAGCCGGTGAACTTGGAGACGACGGCATCCCAG TCTGGAAGCAGCCGGTGAACCTGGAGACGACGGCATCCCAG Direct Gain 0 0.979188643471959 0 0.949930787086487 prediction 0.958377286943918 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25678124 chr4:25678124 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_129967 0 0 1 0 0 nucleus 0 0.500189597929225 0.899861574172974 0.000379195858450032 hm5C_site_50025 DeepMRMD:0.899861574172974;iRNA_m5C:0.000379195858450032 50026 chr10 12875317 12875317 1 + G C rs185534013 12875317 + 12875297 12875337 41 CACACGGGGTGGGGGGAATGGGGGGAGCCCAGGTGATCCCC CACACGGGGTGGGGGGAATGCGGGGAGCCCAGGTGATCCCC Direct Gain 0 0.979159308016931 0 0.967764317989349 prediction 0.958318616033862 Functional Gain - CAMK1D ENSG00000183049 UTR3 Human protein_coding chr10:12875317 chr10:12875317 . . 0 21 hm5C_associated_SNPs_129968 0 0 1 0 0 Ribosome 0 0.500231643921092 0.935528635978698 0.000463287842184856 hm5C_site_50026 DeepMRMD:0.935528635978698;iRNA_m5C:0.000463287842184856 50027 chr4 8621214 8621214 1 + T C LUSC 8621214 + 8621194 8621234 41 ACTGGGAGGTGCCAGCTCTTTGGGGGAGGCCACGGAGCCCG ACTGGGAGGTGCCAGCTCTTCGGGGGAGGCCACGGAGCCCG Direct Gain 0 0.979101144946682 0 0.980418801307678 prediction 0.958202289893365 Functional Gain - CPZ ENSG00000109625 CDS Human protein_coding chr4:8621214 chr4:8621214 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_129969 0 0 1 0 0 Endoplasmic reticulum 0 0.500231643921092 0.960837602615356 0.000463287842184856 hm5C_site_50027 DeepMRMD:0.960837602615356;iRNA_m5C:0.000463287842184856 50028 chr5 137801414 137801414 1 + C G rs6873141 137801414 - 137801394 137801434 41 GGAGAGCTGGTGTCGGGGCGGGGGGGTGCAGCCCGGGGCTG GGAGAGCTGGTGTCGGGGCGCGGGGGTGCAGCCCGGGGCTG Direct Gain 0 0.97908408475699 0 0.904860854148865 prediction 0.95816816951398 Functional Gain - EGR1 ENSG00000120738 UTR5 Human protein_coding chr5:137801414 chr5:137801414 . . 0 21 hm5C_associated_SNPs_129970 0 0 0 0 0 Cytosol 0 0.500231639805955 0.80972170829773 0.000463279611910616 hm5C_site_50028 DeepMRMD:0.80972170829773;iRNA_m5C:0.000463279611910616 50029 chr9 103054911 103054911 1 + A G STAD 103054911 - 103054891 103054931 41 GCTCTTGAGTGCGCCTTTTCTGGGGGGCACATTTGGCCTTG GCTCTTGAGTGCGCCTTTTCCGGGGGGCACATTTGGCCTTG Direct Gain 0 0.978944834585911 0 0.964168429374695 prediction 0.957889669171822 Functional Gain - INVS ENSG00000119509 CDS Human protein_coding chr9:103054911 chr9:103054911 nonsynonymous SNV 0.902 1 21 hm5C_associated_SNPs_129971 0 0 0 0 0 chromatin 0 0.500231643921089 0.92833685874939 0.000463287842177529 hm5C_site_50029 DeepMRMD:0.92833685874939;iRNA_m5C:0.000463287842177529 50030 chr11 1269276 1269276 1 + C G BRCA 1269276 - 1269256 1269296 41 GCTGTAGTGCTCGGCTCTGTGAGGATCCAGGTGGTCCCTGG GCTGTAGTGCTCGGCTCTGTCAGGATCCAGGTGGTCCCTGG Direct Gain 0 0.978894358703351 0 0.954712748527527 prediction 0.957788717406701 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1269276 chr11:1269276 synonymous SNV . 0 21 hm5C_associated_SNPs_129972 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921093 0.909425497055054 0.000463287842185078 hm5C_site_50030 DeepMRMD:0.909425497055054;iRNA_m5C:0.000463287842185078 50031 chr1 152800003 152800003 1 + A G COAD 152800003 - 152799983 152800023 41 GGGGCACTTGGGAGGGCACTTGGGGGTGCACTTGGGAGGGG GGGGCACTTGGGAGGGCACTCGGGGGTGCACTTGGGAGGGG Direct Gain 0 0.978889935344001 0 0.983008682727814 prediction 0.957779870688001 Functional Gain - LCE1A ENSG00000186844 CDS Human protein_coding chr1:152800003 chr1:152800003 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_129973 0 0 0 0 0 unknown 0 0.500231571762929 0.966017365455628 0.000463143525857079 hm5C_site_50031 DeepMRMD:0.966017365455628;iRNA_m5C:0.000463143525857079 50032 chr6 100062549 100062549 1 + A G LUSC 100062549 - 100062529 100062569 41 CACGTCACTGTCGTCGCTCTTGGGATCCCCAGGCTCCGGGG CACGTCACTGTCGTCGCTCTCGGGATCCCCAGGCTCCGGGG Direct Gain 0 0.978635367104152 0 0.985583782196045 prediction 0.957270734208304 Functional Gain - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100062549 chr6:100062549 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_129974 0 0 0 0 0 exosome 0 0.500231643919855 0.97116756439209 0.000463287839709725 hm5C_site_50032 DeepMRMD:0.97116756439209;iRNA_m5C:0.000463287839709725 50033 chr9 82323642 82323642 1 + C G HNSC 82323642 - 82323622 82323662 41 GGCAGCAGCTGCGCTCATCTGAGGGGAGATGTTGTGGAGCC GGCAGCAGCTGCGCTCATCTCAGGGGAGATGTTGTGGAGCC Direct Gain 0 0.9785621207377 0 0.97343248128891 prediction 0.957124241475399 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323642 chr9:82323642 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_129975 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643926259 0.94686496257782 0.000463287852517036 hm5C_site_50033 DeepMRMD:0.94686496257782;iRNA_m5C:0.000463287852517036 50034 chr3 42706048 42706048 1 + C G rs339717 42706048 - 42706028 42706068 41 CCGCCGGGGCTGGCAGTGGTGGGGAAGAGCGGAGGCGGGGG CCGCCGGGGCTGGCAGTGGTCGGGAAGAGCGGAGGCGGGGG Direct Gain 0 0.978480653512704 0 0.975988149642944 prediction 0.956961307025409 Functional Gain - ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42706048 chr3:42706048 synonymous SNV . 0 21 hm5C_associated_SNPs_129976 0 0 0 0 0 membrane 0 0.500231639772349 0.951976299285888 0.000463279544697714 hm5C_site_50034 DeepMRMD:0.951976299285888;iRNA_m5C:0.000463279544697714 50035 chr20 30193552 30193552 1 + G C BLCA 30193552 + 30193532 30193572 41 AGTTGGAACCCCCGGGGGCCGAGGGCTGCCGGTCCGGGCTC AGTTGGAACCCCCGGGGGCCCAGGGCTGCCGGTCCGGGCTC Direct Gain 0 0.978390563638158 0 0.76806366443634 prediction 0.956781127276316 Functional Gain - ID1 ENSG00000125968 CDS Human protein_coding chr20:30193552 chr20:30193552 nonsynonymous SNV 0.056 0 21 hm5C_associated_SNPs_129977 0 0 1 0 1 Endoplasmic reticulum 0 0.500231643921092 0.53612732887268 0.000463287842184856 hm5C_site_50035 DeepMRMD:0.53612732887268;iRNA_m5C:0.000463287842184856 50036 chr8 55372118 55372118 1 + A G rs544794356 55372118 - 55372098 55372138 41 TGGGCCGAGTCGGGGGTGCATGGGACCGGCGGGAGGCTCCG TGGGCCGAGTCGGGGGTGCACGGGACCGGCGGGAGGCTCCG Direct Gain 0 0.978307704113249 0 0.844640672206879 prediction 0.956615408226498 Functional Gain - SOX17 ENSG00000164736 CDS Human protein_coding chr8:55372118 chr8:55372118 nonsynonymous SNV 0.032 0 21 hm5C_associated_SNPs_129978 0 0 0 0 0 Cytosol 0 0.500231642696981 0.689281344413758 0.000463285393961899 hm5C_site_50036 DeepMRMD:0.689281344413758;iRNA_m5C:0.000463285393961899 50037 chr16 3454597 3454597 1 + T C UCS 3454597 + 3454577 3454617 41 ACCGGCTGAGCCCCCATCATTGGGAGAAATCCCCACTCCTC ACCGGCTGAGCCCCCATCATCGGGAGAAATCCCCACTCCTC Direct Gain 0 0.978218926236881 0 0.960057139396667 prediction 0.956437852473762 Functional Gain - ZNF174 ENSG00000103343;ENSG00000262621 CDS Human other chr16:3454597 chr16:3454597 nonsynonymous SNV 0.972 0 21 hm5C_associated_SNPs_129979 0 0 0 0 1 Ribosome 0 0.500231643921092 0.920114278793334 0.000463287842184856 hm5C_site_50037 DeepMRMD:0.920114278793334;iRNA_m5C:0.000463287842184856 50038 chr11 124735447 124735447 1 + C G rs368589400 124735447 - 124735427 124735467 41 ACCCAGCTGGGATCGGGACTGGGGGCTGGGGGCCCAGCCCC ACCCAGCTGGGATCGGGACTCGGGGCTGGGGGCCCAGCCCC Direct Gain 0 0.977963626649556 0 0.989159464836121 prediction 0.955927253299112 Functional Gain - ROBO3 ENSG00000154134 UTR5 Human protein_coding chr11:124735447 chr11:124735447 . . 0 21 hm5C_associated_SNPs_129980 0 0 0 0 0 exosome 0 0.500231643921092 0.978318929672242 0.000463287842184856 hm5C_site_50038 DeepMRMD:0.978318929672242;iRNA_m5C:0.000463287842184856 50039 chr7 149421876 149421876 1 + C G BLCA 149421876 - 149421856 149421896 41 TCTCCAGTGGCTGAGGGACTGAGGGGCTGCCTGCCAGGCTG TCTCCAGTGGCTGAGGGACTCAGGGGCTGCCTGCCAGGCTG Direct Gain 0 0.977891461957616 0 0.922699093818665 prediction 0.955782923915232 Functional Gain - KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149421876 chr7:149421876 synonymous SNV . 0 21 hm5C_associated_SNPs_129981 0 0 0 0 0 Cytosol 0 0.500231643901094 0.84539818763733 0.00046328780218774 hm5C_site_50039 DeepMRMD:0.84539818763733;iRNA_m5C:0.00046328780218774 50040 chr5 148727896 148727896 1 + G C OV 148727896 + 148727876 148727916 41 CTGGTGAGGACTGCCGTTCTGAGGACCCTCCTGATGAGCTT CTGGTGAGGACTGCCGTTCTCAGGACCCTCCTGATGAGCTT Direct Gain 0 0.977868861859454 0 0.866879880428314 prediction 0.955737723718908 Functional Gain - GRPEL2 ENSG00000164284 CDS Human protein_coding chr5:148727896 chr5:148727896 nonsynonymous SNV 0.995 2 21 hm5C_associated_SNPs_129982 0 0 1 0 2 Cytosol 0 0.500231643921026 0.733759760856628 0.000463287842052296 hm5C_site_50040 DeepMRMD:0.733759760856628;iRNA_m5C:0.000463287842052296 50041 chr7 100732118 100732118 1 + C G BRCA 100732118 - 100732098 100732138 41 GGGACAGAGCCCGGTGATCCGGGGGGACCGCTTGTCTCCAG GGGACAGAGCCCGGTGATCCCGGGGGACCGCTTGTCTCCAG Direct Gain 0 0.977834969063163 0 0.958176732063293 prediction 0.955669938126326 Functional Gain - TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100732118 chr7:100732118 nonsynonymous SNV 0.276 0 21 hm5C_associated_SNPs_129983 0 0 0 0 0 nucleus 0 0.500231643931875 0.916353464126586 0.000463287863750494 hm5C_site_50041 DeepMRMD:0.916353464126586;iRNA_m5C:0.000463287863750494 50042 chr6 149068627 149068627 1 + A C rs9498146 149068627 + 149068607 149068647 41 CCTGGCCCCATGGGGCCCCTATGGGGGGCGCCCCTCCGGGC CCTGGCCCCATGGGGCCCCTCTGGGGGGCGCCCCTCCGGGC Direct Gain 0 0.977799353426024 0 0.939100861549377 prediction 0.955598706852047 Functional Gain - UST ENSG00000111962 CDS Human protein_coding chr6:149068627 chr6:149068627 nonsynonymous SNV 0.663 0 21 hm5C_associated_SNPs_129984 0 0 1 0 0 nucleus 0 0.500231643921092 0.878201723098754 0.000463287842184856 hm5C_site_50042 DeepMRMD:0.878201723098754;iRNA_m5C:0.000463287842184856 50043 chr6 84563457 84563457 1 + A C OV 84563457 + 84563437 84563477 41 GGGTGGACGCCGGAGGCAAGAAAGAAGAGGAGACGCCGAAC GGGTGGACGCCGGAGGCAAGCAAGAAGAGGAGACGCCGAAC Direct Gain 0 0.977703205034513 0 0.769288420677185 prediction 0.955406410069027 Functional Gain - RIPPLY2 ENSG00000203877 CDS Human protein_coding chr6:84563457 chr6:84563457 nonsynonymous SNV 0.011 0 21 hm5C_associated_SNPs_129985 0 0 0 0 2 exosome 0 0.500231643983189 0.53857684135437 0.000463287966378401 hm5C_site_50043 DeepMRMD:0.53857684135437;iRNA_m5C:0.000463287966378401 50044 chr6 18468139 18468139 1 + T C rs111522721 18468139 + 18468119 18468159 41 ACCTTGGGCTCCCAAAGTGTTGGGATTACAGGTGTGTGTCA ACCTTGGGCTCCCAAAGTGTCGGGATTACAGGTGTGTGTCA Direct Gain 0 0.977659145912996 0 0.88947868347168 prediction 0.955318291825991 Functional Gain - RNF144B ENSG00000137393 UTR3 Human protein_coding chr6:18468139 chr6:18468139 . . 0 21 hm5C_associated_SNPs_129986 0 0 1 0 0 Nucleus 0 0.500231643921093 0.77895736694336 0.000463287842186189 hm5C_site_50044 DeepMRMD:0.77895736694336;iRNA_m5C:0.000463287842186189 50045 chr2 71801374 71801374 1 + T G UCEC 71801374 - 71801354 71801394 41 GGTGGAACTTCCAGCCAAAAAGAGAGGCGTACTCCCAGCCC GGTGGAACTTCCAGCCAAAACGAGAGGCGTACTCCCAGCCC Direct Gain 0 0.97762623321292 0 0.886566877365112 prediction 0.95525246642584 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71801374 chr2:71801374 nonsynonymous SNV 0.990 5 21 hm5C_associated_SNPs_129987 0 0 0 0 0 Nucleus 0 0.500231643921092 0.773133754730224 0.000463287842184856 hm5C_site_50045 DeepMRMD:0.773133754730224;iRNA_m5C:0.000463287842184856 50046 chr7 22766979 22766979 1 + G C rs533650970 22766979 + 22766959 22766999 41 GGAGGGGTGTGTGGCCCAGGGAGGGCTGGCGGGCGGCCAGC GGAGGGGTGTGTGGCCCAGGCAGGGCTGGCGGGCGGCCAGC Direct Gain 0 0.977599991744567 0 0.789300799369812 prediction 0.955199983489135 Functional Gain - LOC541472 ENSG00000136244 CDS Human protein_coding chr7:22766979 chr7:22766979 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_129988 0 0 0 0 0 unknown 0 0.500231643921092 0.578601598739624 0.000463287842184856 hm5C_site_50046 DeepMRMD:0.578601598739624;iRNA_m5C:0.000463287842184856 50047 chr9 96055137 96055137 1 + T G rs557206980 96055137 - 96055117 96055157 41 GCTCGCCCACGCCGACCTCGATGGAGGAGGCCGTCTGCGCC GCTCGCCCACGCCGACCTCGCTGGAGGAGGCCGTCTGCGCC Direct Gain 0 0.977596459848999 0 0.826954782009125 prediction 0.955192919697998 Functional Gain - WNK2 ENSG00000165238 CDS Human protein_coding chr9:96055137 chr9:96055137 nonsynonymous SNV 0.924 2 21 hm5C_associated_SNPs_129989 0 0 0 0 0 Nucleus 0 0.500231640057896 0.65390956401825 0.000463280115791997 hm5C_site_50047 DeepMRMD:0.65390956401825;iRNA_m5C:0.000463280115791997 50048 chr1 27680316 27680316 1 + C G BLCA 27680316 - 27680296 27680336 41 CTGGGGGCCAGGTTGGTTCTGAGGGGTAGAAGGCCATCCAC CTGGGGGCCAGGTTGGTTCTCAGGGGTAGAAGGCCATCCAC Direct Gain 0 0.977570477270244 0 0.97021472454071 prediction 0.955140954540488 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27680316 chr1:27680316 synonymous SNV . 0 21 hm5C_associated_SNPs_129990 0 0 0 0 0 Ribosome 0 0.500231643921092 0.94042944908142 0.000463287842184856 hm5C_site_50048 DeepMRMD:0.94042944908142;iRNA_m5C:0.000463287842184856 50049 chr19 50170362 50170362 1 + C G UCEC 50170362 - 50170342 50170382 41 AGCAAGGCCGAGGGGACTCAGAGGGGGCTGCTCCTCGCCCC AGCAAGGCCGAGGGGACTCACAGGGGGCTGCTCCTCGCCCC Direct Gain 0 0.977519260898314 0 0.967792868614197 prediction 0.955038521796628 Functional Gain - BCL2L12 ENSG00000126453 CDS Human protein_coding chr19:50170362 chr19:50170362 nonsynonymous SNV 0.089 1 21 hm5C_associated_SNPs_129991 0 0 0 0 0 Ribosome 0 0.500231643921092 0.935585737228394 0.000463287842184856 hm5C_site_50049 DeepMRMD:0.935585737228394;iRNA_m5C:0.000463287842184856 50050 chr19 53989993 53989993 1 + T C LUAD 53989993 + 53989973 53990013 41 GACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGG GACGTGATGCTGGAGAATTACAGGAACCTGGTCTCCCTGGG Direct Gain 0 0.977517400373611 0 0.861611485481262 prediction 0.955034800747222 Functional Gain - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53989993 chr19:53989993 synonymous SNV . 0 21 hm5C_associated_SNPs_129992 0 0 0 0 1 nucleolus 0 0.500231681026445 0.723222970962524 0.000463362052889327 hm5C_site_50050 DeepMRMD:0.723222970962524;iRNA_m5C:0.000463362052889327 50051 chr8 145247303 145247303 1 + A G UCEC 145247303 - 145247283 145247323 41 CCTGACGCCCGCCTCCTACCTGGGAGTGCAGTGCAGCCAAG CCTGACGCCCGCCTCCTACCCGGGAGTGCAGTGCAGCCAAG Direct Gain 0 0.97746666656463 0 0.844069600105286 prediction 0.95493333312926 Functional Gain - MROH1 ENSG00000179832 CDS Human protein_coding chr8:145247303 chr8:145247303 nonsynonymous SNV 0.859 3 21 hm5C_associated_SNPs_129993 0 0 0 0 0 chromatin 0 0.500231645343484 0.688139200210572 0.000463290686967044 hm5C_site_50051 DeepMRMD:0.688139200210572;iRNA_m5C:0.000463290686967044 50052 chr17 79411731 79411731 1 + C G LUSC 79411731 - 79411711 79411751 41 GCCACGGAGGCGGGGAAGCCGGGGGGCAGGTTCTGGTGCAG GCCACGGAGGCGGGGAAGCCCGGGGGCAGGTTCTGGTGCAG Direct Gain 0 0.977289910192037 0 0.960307478904724 prediction 0.954579820384073 Functional Gain - BAHCC1 ENSG00000171282 CDS Human other chr17:79411731 chr17:79411731 synonymous SNV . 0 21 hm5C_associated_SNPs_129994 0 0 0 0 0 chromatin 0 0.500231643921094 0.920614957809448 0.000463287842188631 hm5C_site_50052 DeepMRMD:0.920614957809448;iRNA_m5C:0.000463287842188631 50053 chr4 26585819 26585819 1 + T C KIRP 26585819 + 26585799 26585839 41 GGGCTAGGGCAGGGGAAATGTTGCAGGAGGAGTCGGACCTC GGGCTAGGGCAGGGGAAATGCTGCAGGAGGAGTCGGACCTC Direct Gain 0 0.977232935335355 0 0.903556823730469 prediction 0.95446587067071 Functional Gain - TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26585819 chr4:26585819 synonymous SNV . 0 21 hm5C_associated_SNPs_129995 0 0 1 0 1 Endoplasmic reticulum 0 0.50023164392104 0.807113647460938 0.000463287842080273 hm5C_site_50053 DeepMRMD:0.807113647460938;iRNA_m5C:0.000463287842080273 50054 chr5 149563181 149563181 1 + A G UCEC 149563181 - 149563161 149563201 41 GGCCAGGAGGCTGGTGTTGCTGGGACACAGGCCCCCCAGGG GGCCAGGAGGCTGGTGTTGCCGGGACACAGGCCCCCCAGGG Direct Gain 0 0.977232578119942 0 0.97357177734375 prediction 0.954465156239884 Functional Gain - CDX1 ENSG00000113722 CDS Human protein_coding chr5:149563181 chr5:149563181 nonsynonymous SNV 0.017 2 21 hm5C_associated_SNPs_129996 0 0 0 0 0 Ribosome 0 0.500231643921092 0.9471435546875 0.000463287842184856 hm5C_site_50054 DeepMRMD:0.9471435546875;iRNA_m5C:0.000463287842184856 50055 chr2 219736369 219736369 1 + C G rs141494427 219736369 - 219736349 219736389 41 CCGGGGAGCCCGCGGGGCCAGGGGGTCCGGGGGTGCCGGGC CCGGGGAGCCCGCGGGGCCACGGGGTCCGGGGGTGCCGGGC Direct Gain 0 0.977105545063397 0 0.88956344127655 prediction 0.954211090126794 Functional Gain - WNT6 ENSG00000115596 CDS Human protein_coding chr2:219736369 chr2:219736369 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_129997 0 0 0 0 0 exosome 0 0.500230085320961 0.7791268825531 0.000460170641921387 hm5C_site_50055 DeepMRMD:0.7791268825531;iRNA_m5C:0.000460170641921387 50056 chr7 149427341 149427341 1 + A G UCEC 149427341 - 149427321 149427361 41 GCTGGAGCCGGGGCTGGGGCTGGGGCTGGGGCCTCCCACGC GCTGGAGCCGGGGCTGGGGCCGGGGCTGGGGCCTCCCACGC Direct Gain 0 0.977007341407043 0 0.927722692489624 prediction 0.954014682814087 Functional Gain - KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149427341 chr7:149427341 nonsynonymous SNV 0.582 0 21 hm5C_associated_SNPs_129998 0 0 0 0 0 Cytosol 0 0.500231643918799 0.855445384979248 0.000463287837597415 hm5C_site_50056 DeepMRMD:0.855445384979248;iRNA_m5C:0.000463287837597415 50057 chr3 66271323 66271323 1 + C G rs370822424 66271323 - 66271303 66271343 41 GAGAGGAGGGGCGGGGCCTCGGGGAGTGTGGTGGAGCTAAG GAGAGGAGGGGCGGGGCCTCCGGGAGTGTGGTGGAGCTAAG Direct Gain 0 0.976887459509474 0 0.932690739631653 prediction 0.953774919018949 Functional Gain - SLC25A26 ENSG00000144741 UTR5 Human protein_coding chr3:66271323 chr3:66271323 . . 0 21 hm5C_associated_SNPs_129999 0 0 0 0 0 Ribosome 0 0.500231671177993 0.865381479263306 0.000463342355986329 hm5C_site_50057 DeepMRMD:0.865381479263306;iRNA_m5C:0.000463342355986329 50058 chr5 79950508 79950508 1 + C G rs1105525 79950508 - 79950488 79950528 41 GCCCGGCGGCAGGGCCTGGCGAGGAGCGCGAGCCCGCGGCC GCCCGGCGGCAGGGCCTGGCCAGGAGCGCGAGCCCGCGGCC Direct Gain 0 0.9768593608139 0 0.886819362640381 prediction 0.953718721627801 Functional Gain - DHFR;MSH3 ENSG00000113318;ENSG00000228716 UTR5 Human other chr5:79950508 chr5:79950508 . . 0 21 hm5C_associated_SNPs_130000 0 0 1 0 0 unknown 0 0.500231643921092 0.773638725280762 0.000463287842184856 hm5C_site_50058 DeepMRMD:0.773638725280762;iRNA_m5C:0.000463287842184856 50059 chr1 156622230 156622230 1 + C G COAD 156622230 - 156622210 156622250 41 TCCTGGGCTGCTGGCTCAGTGGGGAGAGAGGCCTCAGGGCC TCCTGGGCTGCTGGCTCAGTCGGGAGAGAGGCCTCAGGGCC Direct Gain 0 0.976817099293192 0 0.986291766166687 prediction 0.953634198586383 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156622230 chr1:156622230 synonymous SNV . 0 21 hm5C_associated_SNPs_130001 0 0 0 0 0 chromatin 0 0.500231643921093 0.972583532333374 0.000463287842185078 hm5C_site_50059 DeepMRMD:0.972583532333374;iRNA_m5C:0.000463287842185078 50060 chr8 9413594 9413594 1 + A G LUAD 9413594 - 9413574 9413614 41 GGGGGCCAGGCCGCTGGCCGTGGGAGAGGCTGGGGTGGTCC GGGGGCCAGGCCGCTGGCCGCGGGAGAGGCTGGGGTGGTCC Direct Gain 0 0.976782363306681 0 0.967357277870178 prediction 0.953564726613362 Functional Gain - TNKS ENSG00000173273 CDS Human protein_coding chr8:9413594 chr8:9413594 nonsynonymous SNV 0.893 1 21 hm5C_associated_SNPs_130002 0 0 0 0 0 Nucleus 0 0.500231643921091 0.934714555740356 0.000463287842182192 hm5C_site_50060 DeepMRMD:0.934714555740356;iRNA_m5C:0.000463287842182192 50061 chr16 30721367 30721367 1 + C G CESC 30721367 - 30721347 30721387 41 CATGAGATGAGGGGGTTTGAGAGGGGCTGGAAGGCCCTTCC CATGAGATGAGGGGGTTTGACAGGGGCTGGAAGGCCCTTCC Direct Gain 0 0.976777521091907 0 0.984837532043457 prediction 0.953555042183813 Functional Gain - SRCAP ENSG00000080603 CDS Human protein_coding chr16:30721367 chr16:30721367 nonsynonymous SNV 0.807 3 21 hm5C_associated_SNPs_130003 0 0 0 0 0 Ribosome 0 0.500231643921092 0.969675064086914 0.000463287842184856 hm5C_site_50061 DeepMRMD:0.969675064086914;iRNA_m5C:0.000463287842184856 50062 chr22 24581865 24581865 1 + A G rs116768581 24581865 - 24581845 24581885 41 GCCGGTAGTTGCGGCAGTCATTGGAGGGCCGCCGTTGCATG GCCGGTAGTTGCGGCAGTCACTGGAGGGCCGCCGTTGCATG Direct Gain 0 0.976774537795923 0 0.910273551940918 prediction 0.953549075591846 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24581865 chr22:24581865 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130004 0 0 0 0 0 Exosome 0 0.500231644728615 0.820547103881836 0.000463289457230287 hm5C_site_50062 DeepMRMD:0.820547103881836;iRNA_m5C:0.000463289457230287 50063 chr3 132379394 132379394 1 + G C UCEC 132379394 + 132379374 132379414 41 TCCCAGCCATGGCGGAGTCTGTGGAGCGCCTGCAGCAGCGG TCCCAGCCATGGCGGAGTCTCTGGAGCGCCTGCAGCAGCGG Direct Gain 0 0.976707662692372 0 0.823205351829529 prediction 0.953415325384744 Functional Gain - UBA5 ENSG00000081307 CDS Human protein_coding chr3:132379394 chr3:132379394 nonsynonymous SNV 0.909 2 21 hm5C_associated_SNPs_130005 0 0 1 0 0 Ribosome 0 0.500231644187253 0.646410703659058 0.000463288374506376 hm5C_site_50063 DeepMRMD:0.646410703659058;iRNA_m5C:0.000463288374506376 50064 chrX 102884995 102884995 1 + G C COAD 102884995 + 102884975 102885015 41 CGGAGGAGGAGTTCTTTCCTGAGGAGCTCTTGCCTGAGCTC CGGAGGAGGAGTTCTTTCCTCAGGAGCTCTTGCCTGAGCTC Direct Gain 0 0.976677981564453 0 0.953062415122986 prediction 0.953355963128905 Functional Gain - TCEAL1 ENSG00000172465 CDS Human protein_coding chrX:102884995 chrX:102884995 nonsynonymous SNV 0.894 0 21 hm5C_associated_SNPs_130006 0 0 1 0 0 Cytosol 0 0.500231640424068 0.906124830245972 0.000463280848135739 hm5C_site_50064 DeepMRMD:0.906124830245972;iRNA_m5C:0.000463280848135739 50065 chr17 7796805 7796805 1 + C G rs199898244 7796805 - 7796785 7796825 41 GGTGGAAGGGCGGGGGGTCCGGAGGGTGCTATGGGGGTGGC GGTGGAAGGGCGGGGGGTCCCGAGGGTGCTATGGGGGTGGC Direct Gain 0 0.976631134958409 0 0.900252938270569 prediction 0.953262269916818 Functional Gain - CHD3 ENSG00000170004 CDS Human protein_coding chr17:7796805 chr17:7796805 synonymous SNV . 0 21 hm5C_associated_SNPs_130007 0 0 0 0 0 Cytosol 0 0.500231643921632 0.800505876541138 0.000463287843263105 hm5C_site_50065 DeepMRMD:0.800505876541138;iRNA_m5C:0.000463287843263105 50066 chr1 150280533 150280533 1 + T C BLCA 150280533 + 150280513 150280553 41 ATTAAGCATCGGCGGTATTATGAGAAGCCATGCCGCCGGCG ATTAAGCATCGGCGGTATTACGAGAAGCCATGCCGCCGGCG Direct Gain 0 0.976626603983624 0 0.851639807224274 prediction 0.953253207967248 Functional Gain - MRPS21 ENSG00000187145 CDS Human other chr1:150280533 chr1:150280533 synonymous SNV . 0 21 hm5C_associated_SNPs_130008 0 0 1 0 1 Cytosol 0 0.500231647031919 0.703279614448548 0.000463294063838493 hm5C_site_50066 DeepMRMD:0.703279614448548;iRNA_m5C:0.000463294063838493 50067 chr6 7590554 7590554 1 + G C LUSC 7590554 + 7590534 7590574 41 AGGAGGAGCTGAACGAGTTCGTGGAGAGCGGCTGCCGGACG AGGAGGAGCTGAACGAGTTCCTGGAGAGCGGCTGCCGGACG Direct Gain 0 0.97660059810312 0 0.881253838539124 prediction 0.953201196206241 Functional Gain - SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7590554 chr6:7590554 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_130009 0 0 1 0 1 Ribosome 0 0.500231747296143 0.762507677078248 0.000463494592285008 hm5C_site_50067 DeepMRMD:0.762507677078248;iRNA_m5C:0.000463494592285008 50068 chr12 111052178 111052178 1 + C G CESC 111052178 - 111052158 111052198 41 CTGGGGTAGGCCTGGGGCCGGAGGAGGGCCCTGGAGCCCTG CTGGGGTAGGCCTGGGGCCGCAGGAGGGCCCTGGAGCCCTG Direct Gain 0 0.976579377758713 0 0.932302474975586 prediction 0.953158755517427 Functional Gain - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111052178 chr12:111052178 nonsynonymous SNV 0.007 2 21 hm5C_associated_SNPs_130010 0 0 0 0 0 chromatin 0 0.500231643921092 0.864604949951172 0.000463287842184856 hm5C_site_50068 DeepMRMD:0.864604949951172;iRNA_m5C:0.000463287842184856 50069 chr6 89855893 89855893 1 + A C KIRC 89855893 + 89855873 89855913 41 GGAGGGGAGCGGCCCGTGGAAGGGGGCGCGTGCAATGGCCG GGAGGGGAGCGGCCCGTGGACGGGGGCGCGTGCAATGGCCG Direct Gain 0 0.976574024752934 0 0.877761483192444 prediction 0.953148049505869 Functional Gain - PM20D2 ENSG00000146281 CDS Human protein_coding chr6:89855893 chr6:89855893 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_130011 0 0 1 0 0 Ribosome 0 0.500229236495615 0.755522966384888 0.000458472991230696 hm5C_site_50069 DeepMRMD:0.755522966384888;iRNA_m5C:0.000458472991230696 50070 chr20 306605 306605 1 + G C MESO 306605 + 306585 306625 41 GCGCGAGGGCCAAGCGGGACGGCGGGCCGCCGCCCCCGGGA GCGCGAGGGCCAAGCGGGACCGCGGGCCGCCGCCCCCGGGA Direct Gain 0 0.976401635665578 0 0.885872662067413 prediction 0.952803271331156 Functional Gain - SOX12 ENSG00000177732 CDS Human protein_coding chr20:306605 chr20:306605 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_130012 0 0 1 0 0 Ribosome 0 0.500231590571348 0.771745324134826 0.000463181142695834 hm5C_site_50070 DeepMRMD:0.771745324134826;iRNA_m5C:0.000463181142695834 50071 chr22 41075543 41075543 1 + A G rs133072 41075543 - 41075523 41075563 41 CGGAGCGCAAGCCCCGCAGTTGGGAAGGGGGTCTTCCTCCG CGGAGCGCAAGCCCCGCAGTCGGGAAGGGGGTCTTCCTCCG Direct Gain 0 0.976394108639787 0 0.944189727306366 prediction 0.952788217279575 Functional Gain - MCHR1 ENSG00000128285 CDS Human protein_coding chr22:41075543 chr22:41075543 nonsynonymous SNV 0.162 0 21 hm5C_associated_SNPs_130013 0 0 0 0 0 exosome 0 0.50023164392109 0.888379454612732 0.000463287842179749 hm5C_site_50071 DeepMRMD:0.888379454612732;iRNA_m5C:0.000463287842179749 50072 chr17 78261805 78261805 1 + A G rs7215243 78261805 - 78261785 78261825 41 AGTGGCGTGGTGGCTGTGCCTGGGGGCTGGCTCGGCTGGCC AGTGGCGTGGTGGCTGTGCCCGGGGGCTGGCTCGGCTGGCC Direct Gain 0 0.976250518608278 0 0.985483586788177 prediction 0.952501037216556 Functional Gain - RNF213 ENSG00000173821 CDS Human protein_coding chr17:78261805 chr17:78261805 synonymous SNV . 0 21 hm5C_associated_SNPs_130014 0 0 0 0 0 Nucleus 0 0.500231643868135 0.970967173576354 0.00046328773626958 hm5C_site_50072 DeepMRMD:0.970967173576354;iRNA_m5C:0.00046328773626958 50073 chr16 53468553 53468553 1 + G C rs577332958 53468553 + 53468533 53468573 41 ATGAGGAGGAGGAGGACGACGGCGAGGCGGAAGACGCCGCG ATGAGGAGGAGGAGGACGACCGCGAGGCGGAAGACGCCGCG Direct Gain 0 0.976192336050526 0 0.88512122631073 prediction 0.952384672101052 Functional Gain - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53468553 chr16:53468553 nonsynonymous SNV 0.828 1 21 hm5C_associated_SNPs_130015 0 0 1 0 0 Ribosome 0 0.500231643578009 0.77024245262146 0.000463287156018843 hm5C_site_50073 DeepMRMD:0.77024245262146;iRNA_m5C:0.000463287156018843 50074 chrX 37027633 37027633 1 + A G CESC 37027633 - 37027613 37027653 41 GAGAGGAGGTACGCGAGTCTTGGGAGGTTCCGGGCAGAGAT GAGAGGAGGTACGCGAGTCTCGGGAGGTTCCGGGCAGAGAT Direct Gain 0 0.976191975863432 0 0.944734454154968 prediction 0.952383951726863 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37027633 chrX:37027633 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130016 0 0 0 0 0 unknown 0 0.500231643923482 0.889468908309936 0.000463287846963256 hm5C_site_50074 DeepMRMD:0.889468908309936;iRNA_m5C:0.000463287846963256 50075 chr17 56167100 56167100 1 + T C rs562221344 56167100 + 56167080 56167120 41 AGGCTGCAGGGGGACAGTGTTGGGATTGTCAAGGAAAAAGG AGGCTGCAGGGGGACAGTGTCGGGATTGTCAAGGAAAAAGG Direct Gain 0 0.976133642886087 0 0.907693982124329 prediction 0.952267285772174 Functional Gain - DYNLL2 ENSG00000264364 UTR3 Human protein_coding chr17:56167100 chr17:56167100 . . 0 21 hm5C_associated_SNPs_130017 0 0 1 2 0 Ribosome 0 0.500231643921092 0.815387964248658 0.000463287842184856 hm5C_site_50075 DeepMRMD:0.815387964248658;iRNA_m5C:0.000463287842184856 50076 chr1 171527023 171527023 1 + A G UCEC 171527023 - 171527003 171527043 41 GGGGCAGGTGGGGCAGGATTTGGGGCTGAGACTGGGGTAGG GGGGCAGGTGGGGCAGGATTCGGGGCTGAGACTGGGGTAGG Direct Gain 0 0.976026273421965 0 0.966297507286072 prediction 0.952052546843929 Functional Gain - PRRC2C ENSG00000117523 CDS Human protein_coding chr1:171527023 chr1:171527023 synonymous SNV . 0 21 hm5C_associated_SNPs_130018 0 0 0 0 0 Cytosol 0 0.500231643921092 0.932595014572144 0.000463287842184856 hm5C_site_50076 DeepMRMD:0.932595014572144;iRNA_m5C:0.000463287842184856 50077 chr16 3063854 3063854 1 + T G SKCM 3063854 - 3063834 3063874 41 CCGCCGCCCAGCCCAGGTAGAGGGAGGCCCCCAGCTCCCGC CCGCCGCCCAGCCCAGGTAGCGGGAGGCCCCCAGCTCCCGC Direct Gain 0 0.975933072162335 0 0.97063422203064 prediction 0.951866144324671 Functional Gain - CLDN9 ENSG00000213937 CDS Human protein_coding chr16:3063854 chr16:3063854 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_130019 0 0 0 0 0 exosome 0 0.500231643920958 0.94126844406128 0.000463287841916182 hm5C_site_50077 DeepMRMD:0.94126844406128;iRNA_m5C:0.000463287841916182 50078 chr17 30771560 30771560 1 + G C BRCA 30771560 + 30771540 30771580 41 AGATGGCGGCGGCGGCGGTGGTGGAGTTCCAGAGAGCCCAG AGATGGCGGCGGCGGCGGTGCTGGAGTTCCAGAGAGCCCAG Direct Gain 0 0.975912316165483 0 0.819609344005585 prediction 0.951824632330967 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30771560 chr17:30771560 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130020 0 0 1 0 1 Ribosome 0 0.500231643921139 0.63921868801117 0.000463287842278115 hm5C_site_50078 DeepMRMD:0.63921868801117;iRNA_m5C:0.000463287842278115 50079 chr11 64004986 64004986 1 + A G UCEC 64004986 - 64004966 64005006 41 AGAGGGGCCTGGGGCTGGAGTGGGATGGGTGATGTCAGCTG AGAGGGGCCTGGGGCTGGAGCGGGATGGGTGATGTCAGCTG Direct Gain 0 0.975907646658393 0 0.905629754066467 prediction 0.951815293316786 Functional Gain - VEGFB ENSG00000173511 CDS Human protein_coding chr11:64004986 chr11:64004986 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130021 0 0 0 0 0 Ribosome 0 0.500231643921097 0.811259508132934 0.000463287842194182 hm5C_site_50079 DeepMRMD:0.811259508132934;iRNA_m5C:0.000463287842194182 50080 chr14 56585267 56585267 1 + C G rs542096185 56585267 - 56585247 56585287 41 GAGAACGGGGTGAGCGCGCCGGGGAAGGGCACGGCGGCGAA GAGAACGGGGTGAGCGCGCCCGGGAAGGGCACGGCGGCGAA Direct Gain 0 0.97585103680153 0 0.86799418926239 prediction 0.95170207360306 Functional Gain - PELI2 ENSG00000139946 UTR5 Human protein_coding chr14:56585267 chr14:56585267 . . 0 21 hm5C_associated_SNPs_130022 0 0 0 0 0 nucleus 0 0.500231654440119 0.73598837852478 0.000463308880237268 hm5C_site_50080 DeepMRMD:0.73598837852478;iRNA_m5C:0.000463308880237268 50081 chrX 149680810 149680810 1 + T C UCEC 149680810 + 149680790 149680830 41 GCCTTCAGAGGCCATCTGATTGGGAGGCACAAGTGCCCGCT GCCTTCAGAGGCCATCTGATCGGGAGGCACAAGTGCCCGCT Direct Gain 0 0.975806704970775 0 0.973715901374817 prediction 0.951613409941551 Functional Gain - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149680810 chrX:149680810 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130023 0 0 0 0 0 Nucleus 0 0.500231645215991 0.947431802749634 0.000463290431982344 hm5C_site_50081 DeepMRMD:0.947431802749634;iRNA_m5C:0.000463290431982344 50082 chr1 154956407 154956407 1 + T C UCEC 154956407 + 154956387 154956427 41 CCGTGCTTGCGACCCCTATTTGGGGGTCTGGGTGGCTACTG CCGTGCTTGCGACCCCTATTCGGGGGTCTGGGTGGCTACTG Direct Gain 0 0.975806318354447 0 0.991718769073486 prediction 0.951612636708894 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154956407 chr1:154956407 synonymous SNV . 0 21 hm5C_associated_SNPs_130024 0 0 1 0 1 Cytosol 0 0.500231643921092 0.983437538146972 0.000463287842184856 hm5C_site_50082 DeepMRMD:0.983437538146972;iRNA_m5C:0.000463287842184856 50083 chr20 42087020 42087020 1 + G C BLCA 42087020 + 42087000 42087040 41 GGTACGGCTTCGTGGAGTTCGAGGACTCCCGCGACGCCGAC GGTACGGCTTCGTGGAGTTCCAGGACTCCCGCGACGCCGAC Direct Gain 0 0.975794223668786 0 0.881306171417236 prediction 0.951588447337572 Functional Gain - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42087020 chr20:42087020 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130025 0 0 1 0 1 Nucleus 0 0.500231643926255 0.762612342834472 0.00046328785250993 hm5C_site_50083 DeepMRMD:0.762612342834472;iRNA_m5C:0.00046328785250993 50084 chr1 236341802 236341802 1 + T C BRCA 236341802 + 236341782 236341822 41 TGCTGGTAAAGACGGGAAATTGGGAGAGGAAGGTTATCGTC TGCTGGTAAAGACGGGAAATCGGGAGAGGAAGGTTATCGTC Direct Gain 0 0.975575655599094 0 0.868076324462891 prediction 0.951151311198188 Functional Gain - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236341802 chr1:236341802 nonsynonymous SNV 0.115 0 21 hm5C_associated_SNPs_130026 0 0 1 1 1 Ribosome 0 0.500231643921092 0.736152648925782 0.000463287842184856 hm5C_site_50084 DeepMRMD:0.736152648925782;iRNA_m5C:0.000463287842184856 50085 chr7 53103647 53103647 1 + G C BLCA 53103647 + 53103627 53103667 41 AGCCGCAGCGGGTGGTCTCCGAGGGCTGGAGGCGCCCTGCC AGCCGCAGCGGGTGGTCTCCCAGGGCTGGAGGCGCCCTGCC Direct Gain 0 0.975574806545819 0 0.957933187484741 prediction 0.951149613091638 Functional Gain - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103647 chr7:53103647 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_130027 0 0 0 0 0 unknown 0 0.500231643921092 0.915866374969482 0.000463287842184856 hm5C_site_50085 DeepMRMD:0.915866374969482;iRNA_m5C:0.000463287842184856 50086 chr12 32897437 32897437 1 + T C rs1971910 32897437 + 32897417 32897457 41 GCAGGTGGATCACCTGAGGTTGGGAGTTGGAGACCAGCTTG GCAGGTGGATCACCTGAGGTCGGGAGTTGGAGACCAGCTTG Direct Gain 0 0.975549858251861 0 0.896290183067322 prediction 0.951099716503723 Functional Gain - DNM1L ENSG00000087470 UTR3 Human protein_coding chr12:32897437 chr12:32897437 . . 0 21 hm5C_associated_SNPs_130028 3 0 0 1 0 Ribosome 0 0.500231643921743 0.792580366134644 0.000463287843485594 hm5C_site_50086 DeepMRMD:0.792580366134644;iRNA_m5C:0.000463287843485594 Mitochondrial myopathy and sideroblastic anemia Mitochondrial myopathy and sideroblastic anemia 50087 chr2 220354160 220354160 1 + T G SKCM 220354160 - 220354140 220354180 41 GTGTGGGGGCAGCAGGAGCTAGGGGTGGGGCCAGTGAGGTA GTGTGGGGGCAGCAGGAGCTCGGGGTGGGGCCAGTGAGGTA Direct Gain 0 0.975497742848292 0 0.892156839370728 prediction 0.950995485696584 Functional Gain - SPEG ENSG00000072195 CDS Human protein_coding chr2:220354160 chr2:220354160 nonsynonymous SNV 0.009 0 21 hm5C_associated_SNPs_130029 0 0 0 0 0 Nucleus 0 0.500231643921094 0.784313678741456 0.000463287842188853 hm5C_site_50087 DeepMRMD:0.784313678741456;iRNA_m5C:0.000463287842188853 50088 chr20 5987125 5987125 1 + G C rs568654866 5987125 + 5987105 5987145 41 CGCGGGGAAGGCGGCTCCCAGGCCAGCGGCCGGAGCGGGCG CGCGGGGAAGGCGGCTCCCACGCCAGCGGCCGGAGCGGGCG Direct Gain 0 0.975442646268028 0 0.960296392440796 prediction 0.950885292536057 Functional Gain - CRLS1 ENSG00000088766 CDS Human protein_coding chr20:5987125 chr20:5987125 nonsynonymous SNV 0.025 0 21 hm5C_associated_SNPs_130030 0 0 1 0 1 Ribosome 0 0.500231643604824 0.920592784881592 0.000463287209648833 hm5C_site_50088 DeepMRMD:0.920592784881592;iRNA_m5C:0.000463287209648833 50089 chr4 123747943 123747943 1 + G C rs75664870 123747943 + 123747923 123747963 41 GCGGGAGGCTGGTGGGTGTGGGGGGTGGAGATGTAGAAGAT GCGGGAGGCTGGTGGGTGTGCGGGGTGGAGATGTAGAAGAT Direct Gain 0 0.975331771548357 0 0.899964690208435 prediction 0.950663543096714 Functional Gain - FGF2 ENSG00000138685 CDS Human protein_coding chr4:123747943 chr4:123747943 nonsynonymous SNV 0.033 1 21 hm5C_associated_SNPs_130031 0 0 1 0 0 Cytosol 0 0.500231694926373 0.79992938041687 0.000463389852745522 hm5C_site_50089 DeepMRMD:0.79992938041687;iRNA_m5C:0.000463389852745522 50090 chr6 43484895 43484895 1 + G C OV 43484895 + 43484875 43484915 41 ATGCGGAGCCGCGTGGTTCTGGGGGAGTTTGGGGTTCGCAA ATGCGGAGCCGCGTGGTTCTCGGGGAGTTTGGGGTTCGCAA Direct Gain 0 0.975248080056684 0 0.953598141670227 prediction 0.950496160113368 Functional Gain - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43484895 chr6:43484895 synonymous SNV . 0 21 hm5C_associated_SNPs_130032 0 0 1 0 1 Ribosome 0 0.500231643920111 0.907196283340454 0.00046328784022287 hm5C_site_50090 DeepMRMD:0.907196283340454;iRNA_m5C:0.00046328784022287 50091 chr10 94835035 94835035 1 + T C UCEC 94835035 + 94835015 94835055 41 AGCTGTTGATCGAGCACTCGTGGGAGAGGGGAGAGCGGCTG AGCTGTTGATCGAGCACTCGCGGGAGAGGGGAGAGCGGCTG Direct Gain 0 0.975230336179232 0 0.912487506866455 prediction 0.950460672358464 Functional Gain - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94835035 chr10:94835035 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_130033 0 0 0 0 1 Endoplasmic reticulum 0 0.50023164391886 0.82497501373291 0.00046328783772065 hm5C_site_50091 DeepMRMD:0.82497501373291;iRNA_m5C:0.00046328783772065 50092 chr10 116045892 116045892 1 + G C GBM 116045892 + 116045872 116045912 41 TGCTGGTGGCGGTGCCTGTGGGGGAGTACCAGGATGTGCCT TGCTGGTGGCGGTGCCTGTGCGGGAGTACCAGGATGTGCCT Direct Gain 0 0.975187157880787 0 0.902953565120697 prediction 0.950374315761575 Functional Gain - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116045892 chr10:116045892 nonsynonymous SNV 0.230 4 21 hm5C_associated_SNPs_130034 0 0 0 0 0 exosome 0 0.50023164392109 0.805907130241394 0.000463287842179305 hm5C_site_50092 DeepMRMD:0.805907130241394;iRNA_m5C:0.000463287842179305 50093 chr3 42242386 42242386 1 + A G HNSC 42242386 - 42242366 42242406 41 GTTGGAGCCGGGGATGTTCATGGGAGAAGGGGTCAGAGATC GTTGGAGCCGGGGATGTTCACGGGAGAAGGGGTCAGAGATC Direct Gain 0 0.97517191125162 0 0.923934817314148 prediction 0.95034382250324 Functional Gain - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42242386 chr3:42242386 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130035 0 0 0 0 0 Cytosol 0 0.500230584289094 0.847869634628296 0.000461168578187898 hm5C_site_50093 DeepMRMD:0.847869634628296;iRNA_m5C:0.000461168578187898 50094 chr1 110585728 110585728 1 + G C CESC 110585728 + 110585708 110585748 41 AGTGCACGCTAGGCGGCTTTGAGGAGCTGCAGAGCATGAAG AGTGCACGCTAGGCGGCTTTCAGGAGCTGCAGAGCATGAAG Direct Gain 0 0.975169204766203 0 0.970048904418945 prediction 0.950338409532407 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110585728 chr1:110585728 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_130036 0 0 1 0 1 Cytosol 0 0.500231639560028 0.94009780883789 0.000463279120056947 hm5C_site_50094 DeepMRMD:0.94009780883789;iRNA_m5C:0.000463279120056947 50095 chr19 38885402 38885402 1 + C G rs371958046 38885402 - 38885382 38885422 41 GCGGAGGAGCGGCGGCGCTGGGGGGGCGTGGTCGGCCCGAA GCGGAGGAGCGGCGGCGCTGCGGGGGCGTGGTCGGCCCGAA Direct Gain 0 0.975161152042663 0 0.968648910522461 prediction 0.950322304085325 Functional Gain - SPRED3 ENSG00000188766 CDS Human protein_coding chr19:38885402 chr19:38885402 synonymous SNV . 0 21 hm5C_associated_SNPs_130037 0 0 0 0 0 chromatin 0 0.500231661405273 0.937297821044922 0.000463322810545508 hm5C_site_50095 DeepMRMD:0.937297821044922;iRNA_m5C:0.000463322810545508 50096 chr1 16057121 16057121 1 + C G OV 16057121 - 16057101 16057141 41 CTTTGGTGATGGTGCCCTCGGGGGGTGAGCAGTGGCAGGGC CTTTGGTGATGGTGCCCTCGCGGGGTGAGCAGTGGCAGGGC Direct Gain 0 0.975145417133362 0 0.970874905586243 prediction 0.950290834266724 Functional Gain - PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16057121 chr1:16057121 nonsynonymous SNV 0.341 0 21 hm5C_associated_SNPs_130038 0 0 0 0 0 chromatin 0 0.500231643921365 0.941749811172486 0.000463287842729754 hm5C_site_50096 DeepMRMD:0.941749811172486;iRNA_m5C:0.000463287842729754 50097 chr17 5984107 5984107 1 + A G DLBC 5984107 - 5984087 5984127 41 CCGGGTGCCCGGGGGCCCTGTGGGAGAGCCACGCGGACCCG CCGGGTGCCCGGGGGCCCTGCGGGAGAGCCACGCGGACCCG Direct Gain 0 0.975118069221855 0 0.980630874633789 prediction 0.950236138443709 Functional Gain - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:5984107 chr17:5984107 synonymous SNV . 0 21 hm5C_associated_SNPs_130039 0 0 0 0 0 exosome 0 0.500231643785392 0.961261749267578 0.000463287570784621 hm5C_site_50097 DeepMRMD:0.961261749267578;iRNA_m5C:0.000463287570784621 50098 chr11 6591625 6591625 1 + A G UCEC 6591625 - 6591605 6591645 41 ATACCTGAGTGAGGCTTACCTGGGAGGGGCATGAGCGTGGC ATACCTGAGTGAGGCTTACCCGGGAGGGGCATGAGCGTGGC Direct Gain 0 0.975108576181639 0 0.928770303726196 prediction 0.950217152363277 Functional Gain - DNHD1 ENSG00000179532 CDS Human protein_coding chr11:6591625 chr11:6591625 synonymous SNV . 0 21 hm5C_associated_SNPs_130040 0 0 0 0 0 chromatin 0 0.500231643920773 0.857540607452392 0.000463287841545368 hm5C_site_50098 DeepMRMD:0.857540607452392;iRNA_m5C:0.000463287841545368 50099 chr11 46387920 46387920 1 + C G rs116627533 46387920 - 46387900 46387940 41 GAGGAGGAGGCCTGCCCAGCGGGGGAGCGACGCCGGGCCTT GAGGAGGAGGCCTGCCCAGCCGGGGAGCGACGCCGGGCCTT Direct Gain 0 0.975071845311279 0 0.973930597305298 prediction 0.950143690622558 Functional Gain - DGKZ ENSG00000149091 CDS Human protein_coding chr11:46387920 chr11:46387920 synonymous SNV . 0 21 hm5C_associated_SNPs_130041 0 0 0 0 0 Ribosome 0 0.500231643921092 0.947861194610596 0.000463287842184856 hm5C_site_50099 DeepMRMD:0.947861194610596;iRNA_m5C:0.000463287842184856 50100 chr1 4715137 4715137 1 + C G rs76277841 4715137 - 4715117 4715157 41 TCGCGGCGCAGCAAAGGGCTGGGGAGCCGCGGCTTCGCCCT TCGCGGCGCAGCAAAGGGCTCGGGAGCCGCGGCTTCGCCCT Direct Gain 0 0.97506787749267 0 0.855286717414856 prediction 0.950135754985339 Functional Gain - AJAP1 ENSG00000196581 UTR5 Human protein_coding chr1:4715137 chr1:4715137 . . 0 21 hm5C_associated_SNPs_130042 0 0 0 0 0 exosome 0 0.500231643921093 0.710573434829712 0.000463287842185078 hm5C_site_50100 DeepMRMD:0.710573434829712;iRNA_m5C:0.000463287842185078 50101 chr7 44802545 44802545 1 + C G rs77553241 44802545 - 44802525 44802565 41 GCAGGCAGGAGGCGCTTTTTGAGGAGGCCCTGCAGCACCGA GCAGGCAGGAGGCGCTTTTTCAGGAGGCCCTGCAGCACCGA Direct Gain 0 0.975042280624675 0 0.950152516365051 prediction 0.950084561249351 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802545 chr7:44802545 synonymous SNV . 0 21 hm5C_associated_SNPs_130043 0 0 0 0 0 Cytosol 0 0.500231643921092 0.900305032730102 0.000463287842184856 hm5C_site_50101 DeepMRMD:0.900305032730102;iRNA_m5C:0.000463287842184856 50102 chr1 153617603 153617603 1 + G C rs148930480 153617603 + 153617583 153617623 41 AGGCCGAGGCCGTGGACGAGGGAGAGGTGCCCTTGCTCGCC AGGCCGAGGCCGTGGACGAGCGAGAGGTGCCCTTGCTCGCC Direct Gain 0 0.97502707722443 0 0.740226268768311 prediction 0.950054154448861 Functional Gain - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617603 chr1:153617603 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130044 0 0 1 0 1 Cytosol 0 0.500228881051139 0.480452537536622 0.000457762102278325 hm5C_site_50102 DeepMRMD:0.480452537536622;iRNA_m5C:0.000457762102278325 50103 chr11 1651446 1651446 1 + A C UCEC 1651446 + 1651426 1651466 41 GTGGCTCCTGTGGGGGGTCCAAGGGGGGCTGTGGCTCCTGT GTGGCTCCTGTGGGGGGTCCCAGGGGGGCTGTGGCTCCTGT Direct Gain 0 0.975020966526341 0 0.98491495847702 prediction 0.950041933052683 Functional Gain - KRTAP5-5 ENSG00000185940 CDS Human protein_coding chr11:1651446 chr11:1651446 nonsynonymous SNV 0.024 1 21 hm5C_associated_SNPs_130045 0 0 0 0 0 unknown 0 0.500231643921092 0.96982991695404 0.000463287842184856 hm5C_site_50103 DeepMRMD:0.96982991695404;iRNA_m5C:0.000463287842184856 50104 chr5 36152987 36152987 1 + G C HNSC 36152987 + 36152967 36153007 41 GGCATGGGGGTCTCCGCCCTGGAGAAAGAGGAGCCCGACAG GGCATGGGGGTCTCCGCCCTCGAGAAAGAGGAGCCCGACAG Direct Gain 0 0.975009104316047 0 0.969994306564331 prediction 0.950018208632095 Functional Gain - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36152987 chr5:36152987 synonymous SNV . 0 21 hm5C_associated_SNPs_130046 0 0 1 0 0 Cytosol 0 0.500231643904261 0.939988613128662 0.000463287808522006 hm5C_site_50104 DeepMRMD:0.939988613128662;iRNA_m5C:0.000463287808522006 50105 chr11 130343256 130343256 1 + T G LIHC 130343256 - 130343236 130343276 41 GAGGCTCTTTGGGCAGATAGAAGGAGTAGCGGACCCGGGGC GAGGCTCTTTGGGCAGATAGCAGGAGTAGCGGACCCGGGGC Direct Gain 0 0.97499092433863 0 0.929265379905701 prediction 0.94998184867726 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130343256 chr11:130343256 nonsynonymous SNV 0.990 3 21 hm5C_associated_SNPs_130047 0 0 0 0 0 exosome 0 0.500231643922244 0.858530759811402 0.000463287844488347 hm5C_site_50105 DeepMRMD:0.858530759811402;iRNA_m5C:0.000463287844488347 50106 chr14 24529209 24529209 1 + C G rs61564890 24529209 - 24529189 24529229 41 GCTTGGGAGATGTCGCTCACGGGGAAGGACATGAAGCGCAG GCTTGGGAGATGTCGCTCACCGGGAAGGACATGAAGCGCAG Direct Gain 0 0.974958304575865 0 0.742614805698395 prediction 0.949916609151729 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24529209 chr14:24529209 synonymous SNV . 0 21 hm5C_associated_SNPs_130048 0 0 0 0 0 Endoplasmic reticulum 0 0.500922733288348 0.48522961139679 0.00184546657669626 hm5C_site_50106 DeepMRMD:0.48522961139679;iRNA_m5C:0.00184546657669626 50107 chr11 120201131 120201131 1 + A C LUAD 120201131 + 120201111 120201151 41 TTTAGCATCTGGCGCTTTGCATGGAGGAAGAGCATCAAGAA TTTAGCATCTGGCGCTTTGCCTGGAGGAAGAGCATCAAGAA Direct Gain 0 0.974956543944261 0 0.888484477996826 prediction 0.949913087888521 Functional Gain - TMEM136 ENSG00000181264 CDS Human protein_coding chr11:120201131 chr11:120201131 synonymous SNV . 0 21 hm5C_associated_SNPs_130049 0 0 0 0 1 Endoplasmic reticulum 0 0.500231643922142 0.776968955993652 0.000463287844283178 hm5C_site_50107 DeepMRMD:0.776968955993652;iRNA_m5C:0.000463287844283178 50108 chr20 32441367 32441367 1 + T C rs114112565 32441367 + 32441347 32441387 41 ACTGGGCTGGATCCATGTAATGGGGTCCAGCGCTGGCTGGG ACTGGGCTGGATCCATGTAACGGGGTCCAGCGCTGGCTGGG Direct Gain 0 0.974934276189644 0 0.979122638702393 prediction 0.949868552379287 Functional Gain - CHMP4B ENSG00000101421 UTR3 Human protein_coding chr20:32441367 chr20:32441367 . . 0 21 hm5C_associated_SNPs_130050 1 0 1 0 1 Ribosome 0 0.500231643785409 0.958245277404786 0.000463287570817039 hm5C_site_50108 DeepMRMD:0.958245277404786;iRNA_m5C:0.000463287570817039 not specified not specified 50109 chr10 81585919 81585919 1 + G C rs11196155 81585919 + 81585899 81585939 41 GGGAGGCCTGGCCCGGCAGCGGGGAGAAGGGTGCGGCGCAG GGGAGGCCTGGCCCGGCAGCCGGGAGAAGGGTGCGGCGCAG Direct Gain 0 0.974931263296621 0 0.970295667648315 prediction 0.949862526593241 Functional Gain - LOC642361 ENSG00000272447 ncRNA_exonic Human lincRNA chr10:81585919 chr10:81585919 . . 0 21 hm5C_associated_SNPs_130051 0 0 0 0 0 unknown 0 0.500231643921092 0.94059133529663 0.00046328784218419 hm5C_site_50109 DeepMRMD:0.94059133529663;iRNA_m5C:0.00046328784218419 50110 chr19 1254342 1254342 1 + C G rs575435876 1254342 - 1254322 1254362 41 GGCCGGCAGGGCGAGGACACGGGGGAGGCTATGCTGGGGTC GGCCGGCAGGGCGAGGACACCGGGGAGGCTATGCTGGGGTC Direct Gain 0 0.974915663888451 0 0.901549577713013 prediction 0.949831327776903 Functional Gain - MIDN ENSG00000167470 CDS Human protein_coding chr19:1254342 chr19:1254342 synonymous SNV . 0 21 hm5C_associated_SNPs_130052 0 0 0 0 0 chromatin 0 0.500231643921092 0.803099155426026 0.000463287842184856 hm5C_site_50110 DeepMRMD:0.803099155426026;iRNA_m5C:0.000463287842184856 50111 chr13 109793378 109793378 1 + C G rs28664189 109793378 - 109793358 109793398 41 GCGCAGGGCCTGTAGGGCGCGGGGGGCGGCCCGGGCGGGGG GCGCAGGGCCTGTAGGGCGCCGGGGGCGGCCCGGGCGGGGG Direct Gain 0 0.974850737984628 0 0.95522153377533 prediction 0.949701475969257 Functional Gain - MYO16 ENSG00000041515 CDS Human protein_coding chr13:109793378 chr13:109793378 synonymous SNV . 0 21 hm5C_associated_SNPs_130053 0 0 0 0 0 chromatin 0 0.500231643921105 0.91044306755066 0.000463287842209059 hm5C_site_50111 DeepMRMD:0.91044306755066;iRNA_m5C:0.000463287842209059 50112 chr2 170362704 170362704 1 + C G rs188576031 170362704 - 170362684 170362724 41 GACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCT GACGGGGCGGCTGGCCGGGCCGGGGGCTGACCCCCCCACCT Direct Gain 0 0.974826065594681 0 0.975434720516205 prediction 0.949652131189363 Functional Gain - BBS5 ENSG00000163093 UTR3 Human protein_coding chr2:170362704 chr2:170362704 . . 0 21 hm5C_associated_SNPs_130054 0 0 0 0 0 Nucleus 0 0.500231643918215 0.95086944103241 0.000463287836429238 hm5C_site_50112 DeepMRMD:0.95086944103241;iRNA_m5C:0.000463287836429238 50113 chr20 33297096 33297096 1 + C G HNSC 33297096 - 33297076 33297116 41 CATCAAGGAGGGCGCGGGCGGAGGGCGGCCCGCGGGGGCAG CATCAAGGAGGGCGCGGGCGCAGGGCGGCCCGCGGGGGCAG Direct Gain 0 0.974757886181933 0 0.915610790252686 prediction 0.949515772363865 Functional Gain - TP53INP2 ENSG00000078804 CDS Human protein_coding chr20:33297096 chr20:33297096 nonsynonymous SNV 0.749 1 21 hm5C_associated_SNPs_130055 0 0 0 0 0 nucleolus 0 0.500231643921092 0.831221580505372 0.000463287842184856 hm5C_site_50113 DeepMRMD:0.831221580505372;iRNA_m5C:0.000463287842184856 50114 chr14 65008483 65008483 1 + G C HNSC 65008483 + 65008463 65008503 41 CCATCACGCGCGCCCGCTTCGAGGAGCTCAATGCCGACCTC CCATCACGCGCGCCCGCTTCCAGGAGCTCAATGCCGACCTC Direct Gain 0 0.974757736413606 0 0.863692820072174 prediction 0.949515472827211 Functional Gain - HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65008483 chr14:65008483 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130056 0 0 0 0 0 Cytosol 0 0.500231644186342 0.727385640144348 0.000463288372684723 hm5C_site_50114 DeepMRMD:0.727385640144348;iRNA_m5C:0.000463288372684723 50115 chr2 201478612 201478612 1 + G C BRCA 201478612 + 201478592 201478632 41 GCTCGGCGCCAGGTGGGAAAGTGGAGTTCAAGAGGACTCTC GCTCGGCGCCAGGTGGGAAACTGGAGTTCAAGAGGACTCTC Direct Gain 0 0.974723178898559 0 0.814274370670319 prediction 0.949446357797117 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201478612 chr2:201478612 nonsynonymous SNV 0.893 2 21 hm5C_associated_SNPs_130057 0 0 0 0 2 Endoplasmic reticulum 0 0.500231644155293 0.628548741340638 0.000463288310586174 hm5C_site_50115 DeepMRMD:0.628548741340638;iRNA_m5C:0.000463288310586174 50116 chr6 17600945 17600945 1 + G C BLCA 17600945 + 17600925 17600965 41 GCCCGAAGCCGCGGCGCCACGAGAGAGACCAGCTCGGCTGA GCCCGAAGCCGCGGCGCCACCAGAGAGACCAGCTCGGCTGA Direct Gain 0 0.974700133929822 0 0.936058640480042 prediction 0.949400267859643 Functional Gain - FAM8A1 ENSG00000137414 CDS Human protein_coding chr6:17600945 chr6:17600945 nonsynonymous SNV 0.111 0 21 hm5C_associated_SNPs_130058 0 0 0 0 0 Ribosome 0 0.500231932371588 0.872117280960084 0.000463864743175391 hm5C_site_50116 DeepMRMD:0.872117280960084;iRNA_m5C:0.000463864743175391 50117 chr14 69787507 69787507 1 + A G LUAD 69787507 - 69787487 69787527 41 GGTTGAAGGCGTGCTGTCTGTAGGGGTCCTCTCCAGCCTTC GGTTGAAGGCGTGCTGTCTGCAGGGGTCCTCTCCAGCCTTC Direct Gain 0 0.97469249918159 0 0.963965177536011 prediction 0.94938499836318 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69787507 chr14:69787507 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_130059 0 0 0 0 0 chromatin 0 0.500231643941063 0.927930355072022 0.000463287882126018 hm5C_site_50117 DeepMRMD:0.927930355072022;iRNA_m5C:0.000463287882126018 50118 chr19 53952872 53952872 1 + T C LUAD 53952872 + 53952852 53952892 41 GACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCCTGG GACGTGATGCTGGAGAATTACAGGAACCTGGTCTCCCCTGG Direct Gain 0 0.974688549127074 0 0.868295252323151 prediction 0.949377098254148 Functional Gain - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53952872 chr19:53952872 . . 0 21 hm5C_associated_SNPs_130060 0 0 0 0 1 unknown 0 0.500231644048029 0.736590504646302 0.000463288096057557 hm5C_site_50118 DeepMRMD:0.736590504646302;iRNA_m5C:0.000463288096057557 50119 chr9 103189560 103189560 1 + T C rs183786527 103189560 + 103189540 103189580 41 GCCGCCGCCGCCGCCCGGCGTTCGGGAGCCCGCGGCCCTCC GCCGCCGCCGCCGCCCGGCGCTCGGGAGCCCGCGGCCCTCC Direct Gain 0 0.974676437705388 0 0.492940187454224 prediction 0.949352875410777 Functional Gain - MSANTD3 ENSG00000066697 UTR5 Human protein_coding chr9:103189560 chr9:103189560 . . 0 21 hm5C_associated_SNPs_130061 0 0 1 0 0 Cytosol 0 0.500231643921092 0 0.000463287842184856 hm5C_site_50119 DeepMRMD:0;iRNA_m5C:0.000463287842184856 50120 chr1 86919096 86919096 1 + G C HNSC 86919096 + 86919076 86919116 41 GGAAATCAGTAGGCAGAAATGAGGAGGAGCGAAAGTGGGGC GGAAATCAGTAGGCAGAAATCAGGAGGAGCGAAAGTGGGGC Direct Gain 0 0.97462988492673 0 0.922987341880798 prediction 0.94925976985346 Functional Gain - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86919096 chr1:86919096 nonsynonymous SNV 0.013 0 21 hm5C_associated_SNPs_130062 0 0 0 0 1 exosome 0 0.500231640355308 0.845974683761596 0.000463280710615965 hm5C_site_50120 DeepMRMD:0.845974683761596;iRNA_m5C:0.000463280710615965 50121 chr8 125463544 125463544 1 + T C rs11556913 125463544 + 125463524 125463564 41 GAGTCAAGTGGTCAGCCGAGTTGGAGGCTGATTTGCCCCGA GAGTCAAGTGGTCAGCCGAGCTGGAGGCTGATTTGCCCCGA Direct Gain 0 0.974626880946074 0 0.808835864067078 prediction 0.949253761892149 Functional Gain - TRMT12 ENSG00000183665 CDS Human protein_coding chr8:125463544 chr8:125463544 synonymous SNV . 0 21 hm5C_associated_SNPs_130063 0 0 0 0 0 Cytosol 0 0.500231650733417 0.617671728134156 0.000463301466834487 hm5C_site_50121 DeepMRMD:0.617671728134156;iRNA_m5C:0.000463301466834487 50122 chr21 26934559 26934559 1 + T C rs184440338 26934559 + 26934539 26934579 41 GGGAACCAAGGAGACGCTCCTGGCACTGCAGGTACGCCGAC GGGAACCAAGGAGACGCTCCCGGCACTGCAGGTACGCCGAC Direct Gain 0 0.974599661156581 0 0.672082364559174 prediction 0.949199322313161 Functional Gain - MIR155HG ENSG00000234883 ncRNA_exonic Human lincRNA chr21:26934559 chr21:26934559 . . 0 21 hm5C_associated_SNPs_130064 0 0 0 0 1 unknown 0 0.500231643926448 0.344164729118348 0.0004632878528954 hm5C_site_50122 DeepMRMD:0.344164729118348;iRNA_m5C:0.0004632878528954 50123 chr1 152883012 152883012 1 + G C rs554942694 152883012 + 152882992 152883032 41 AGGGGCAGCTGGAGCTCTCTGAGCAGCAGGAGGGGCAGCTG AGGGGCAGCTGGAGCTCTCTCAGCAGCAGGAGGGGCAGCTG Direct Gain 0 0.974555500869759 0 0.937635183334351 prediction 0.949111001739517 Functional Gain - IVL ENSG00000163207 CDS Human protein_coding chr1:152883012 chr1:152883012 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130065 0 0 0 0 0 unknown 0 0.500231643921279 0.875270366668702 0.000463287842558557 hm5C_site_50123 DeepMRMD:0.875270366668702;iRNA_m5C:0.000463287842558557 50124 chr4 186321603 186321603 1 + A G UCEC 186321603 - 186321583 186321623 41 GGATGGAAGGGCCCAGATTTTTGGAACAAGGATGCATACTA GGATGGAAGGGCCCAGATTTCTGGAACAAGGATGCATACTA Direct Gain 0 0.974552255988102 0 0.942708194255829 prediction 0.949104511976205 Functional Gain - UFSP2 ENSG00000109775 CDS Human protein_coding chr4:186321603 chr4:186321603 synonymous SNV . 0 21 hm5C_associated_SNPs_130066 0 0 0 0 1 nucleus 0 0.500231643169736 0.885416388511658 0.000463286339472235 hm5C_site_50124 DeepMRMD:0.885416388511658;iRNA_m5C:0.000463286339472235 50125 chr1 86900332 86900332 1 + T C rs17449526 86900332 + 86900312 86900352 41 CACCACAGCTTTCCCATGAATGGGACTGAGCTTCCACCTCC CACCACAGCTTTCCCATGAACGGGACTGAGCTTCCACCTCC Direct Gain 0 0.974541186841692 0 0.317404985427856 prediction 0.949082373683384 Functional Gain - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86900332 chr1:86900332 synonymous SNV . 0 21 hm5C_associated_SNPs_130067 0 0 0 0 1 exosome 0 0.500231643921092 0 0.000463287842184856 hm5C_site_50125 DeepMRMD:0;iRNA_m5C:0.000463287842184856 50126 chr8 99961433 99961433 1 + T G BLCA 99961433 - 99961413 99961453 41 GGTAAAAGGCAGGGCCGGGAAGGGGAAGCGCGCGTCCACGA GGTAAAAGGCAGGGCCGGGACGGGGAAGCGCGCGTCCACGA Direct Gain 0 0.974530653553017 0 0.9105304479599 prediction 0.949061307106034 Functional Gain - OSR2 ENSG00000164920 CDS Human protein_coding chr8:99961433 chr8:99961433 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_130068 0 0 0 0 0 exosome 0 0.500231643921092 0.8210608959198 0.000463287842184856 hm5C_site_50126 DeepMRMD:0.8210608959198;iRNA_m5C:0.000463287842184856 50127 chrX 123045085 123045085 1 + T C rs768232248 123045085 + 123045065 123045105 41 TGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGA TGCCTGTAATCCCAGCACTTCGGGAGGCCGAGGCGGGCAGA Direct Gain 0 0.974517017283598 0 0.84915953874588 prediction 0.949034034567196 Functional Gain - XIAP ENSG00000101966 UTR3 Human protein_coding chrX:123045085 chrX:123045085 . . 0 21 hm5C_associated_SNPs_130069 0 0 0 0 0 Cytosol 0 0.500231439305018 0.69831907749176 0.0004628786100358 hm5C_site_50127 DeepMRMD:0.69831907749176;iRNA_m5C:0.0004628786100358 50128 chr22 29168755 29168755 1 + T C rs11556025 29168755 + 29168735 29168775 41 GATCCGAGGCTGGCGGGTTTTGGCAGTAGCTGTGGCTGCGG GATCCGAGGCTGGCGGGTTTCGGCAGTAGCTGTGGCTGCGG Direct Gain 0 0.974500920248183 0 0.965194821357727 prediction 0.949001840496366 Functional Gain - CCDC117 ENSG00000159873 UTR5 Human protein_coding chr22:29168755 chr22:29168755 . . 0 21 hm5C_associated_SNPs_130070 0 0 1 0 0 Ribosome 0 0.5002316437968 0.930389642715454 0.000463287593599704 hm5C_site_50128 DeepMRMD:0.930389642715454;iRNA_m5C:0.000463287593599704 50129 chr17 72588674 72588674 1 + G C CHOL 72588674 + 72588654 72588694 41 CCAGGAGGAACCCAAGCATTGAGGAGCTGCGGGATCTACTG CCAGGAGGAACCCAAGCATTCAGGAGCTGCGGGATCTACTG Direct Gain 0 0.974496524010052 0 0.782214283943176 prediction 0.948993048020103 Functional Gain - C17orf77 ENSG00000182352 CDS Human antisense chr17:72588674 chr17:72588674 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_130071 0 0 0 0 0 unknown 0 0.500231643931597 0.564428567886352 0.000463287863193607 hm5C_site_50129 DeepMRMD:0.564428567886352;iRNA_m5C:0.000463287863193607 50130 chr10 64564892 64564892 1 + G C rs2236295 64564892 + 64564872 64564912 41 GCCTCACCTTCCGGGGCAGCGGGGGCGGCCGCGGCGCTTCC GCCTCACCTTCCGGGGCAGCCGGGGCGGCCGCGGCGCTTCC Direct Gain 0 0.974487968095791 0 0.934071183204651 prediction 0.948975936191582 Functional Gain - ADO ENSG00000181915 CDS Human protein_coding chr10:64564892 chr10:64564892 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_130072 0 1 0 0 0 exosome 0 0.500231643923246 0.868142366409302 0.000463287846491189 hm5C_site_50130 DeepMRMD:0.868142366409302;iRNA_m5C:0.000463287846491189 50131 chr1 228559610 228559610 1 + A G UCEC 228559610 - 228559590 228559630 41 GGTGGGGGCTGCAGCCCTCCTGGGGGGCAGAACCCTGCTTG GGTGGGGGCTGCAGCCCTCCCGGGGGGCAGAACCCTGCTTG Direct Gain 0 0.97442238659252 0 0.986512064933777 prediction 0.948844773185041 Functional Gain - OBSCN ENSG00000154358 CDS Human protein_coding chr1:228559610 chr1:228559610 nonsynonymous SNV 0.139 0 21 hm5C_associated_SNPs_130073 0 0 0 0 0 Ribosome 0 0.500231643921092 0.973024129867554 0.000463287842184856 hm5C_site_50131 DeepMRMD:0.973024129867554;iRNA_m5C:0.000463287842184856 50132 chr16 30990508 30990508 1 + C G KICH 30990508 - 30990488 30990528 41 GGGGCCCAGCAGGTGGTTCTGGGGGACGCAGAGGCGCACTG GGGGCCCAGCAGGTGGTTCTCGGGGACGCAGAGGCGCACTG Direct Gain 0 0.97439289578578 0 0.979534149169922 prediction 0.948785791571561 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30990508 chr16:30990508 nonsynonymous SNV 0.023 2 21 hm5C_associated_SNPs_130074 0 0 0 0 0 Cytosol 0 0.500231643921694 0.959068298339844 0.000463287843388116 hm5C_site_50132 DeepMRMD:0.959068298339844;iRNA_m5C:0.000463287843388116 50133 chr19 39912850 39912850 1 + A G UCEC 39912850 - 39912830 39912870 41 GTCCCAGAGGGGTCCAGTGTTGGGGGTCCAGCATCCTCCAG GTCCCAGAGGGGTCCAGTGTCGGGGGTCCAGCATCCTCCAG Direct Gain 0 0.974355399833242 0 0.972879707813263 prediction 0.948710799666485 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39912850 chr19:39912850 synonymous SNV . 0 21 hm5C_associated_SNPs_130075 0 0 0 0 0 Nucleus 0 0.500231643967442 0.945759415626526 0.000463287934883816 hm5C_site_50133 DeepMRMD:0.945759415626526;iRNA_m5C:0.000463287934883816 50134 chr5 121488078 121488078 1 + G C HNSC 121488078 + 121488058 121488098 41 AGCAAGTTGCCCAAGCATTTGAGGAGGCCAGAACCCTCCAA AGCAAGTTGCCCAAGCATTTCAGGAGGCCAGAACCCTCCAA Direct Gain 0 0.974347408346861 0 0.900528609752655 prediction 0.948694816693721 Functional Gain - ZNF474 ENSG00000164185 CDS Human protein_coding chr5:121488078 chr5:121488078 nonsynonymous SNV 0.995 1 21 hm5C_associated_SNPs_130076 0 0 0 0 0 membrane 0 0.500231643921089 0.80105721950531 0.000463287842177973 hm5C_site_50134 DeepMRMD:0.80105721950531;iRNA_m5C:0.000463287842177973 50135 chr1 109816189 109816189 1 + C G rs41279720 109816189 - 109816169 109816209 41 GCTCTGCCGGGGCGGTGGGCGGGGAGGGGGGCCTCCCCGGC GCTCTGCCGGGGCGGTGGGCCGGGAGGGGGGCCTCCCCGGC Direct Gain 0 0.97430277250605 0 0.935972452163696 prediction 0.9486055450121 Functional Gain - CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109816189 chr1:109816189 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_130077 0 0 0 0 0 Endoplasmic reticulum 0 0.500231656250416 0.871944904327392 0.000463312500831536 hm5C_site_50135 DeepMRMD:0.871944904327392;iRNA_m5C:0.000463312500831536 50136 chr12 54519874 54519874 1 + G C rs189348185 54519874 + 54519854 54519894 41 CCTCGGCTCTGGGGAGAAAGGGGGGGCTGTGGCGTGGGGGC CCTCGGCTCTGGGGAGAAAGCGGGGGCTGTGGCGTGGGGGC Direct Gain 0 0.974279271615327 0 0.974524736404419 prediction 0.948558543230655 Functional Gain - LINC02381 ENSG00000250432;ENSG00000250742 upstream Human other chr12:54519874 chr12:54519874 . . 0 21 hm5C_associated_SNPs_130078 0 0 0 0 0 unknown 0 0.500231643921092 0.949049472808838 0.000463287842184856 hm5C_site_50136 DeepMRMD:0.949049472808838;iRNA_m5C:0.000463287842184856 50137 chr15 63481836 63481836 1 + T C COAD 63481836 + 63481816 63481856 41 GCGAGAAGATGGCGAAGACGTACGATTATCTCTTCAAGCTC GCGAGAAGATGGCGAAGACGCACGATTATCTCTTCAAGCTC Direct Gain 0 0.974272094703185 0 0.686713337898254 prediction 0.948544189406369 Functional Gain - RAB8B ENSG00000166128 CDS Human protein_coding chr15:63481836 chr15:63481836 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130079 0 0 1 0 0 Nucleus 0 0.500232099504295 0.373426675796508 0.000464199008589405 hm5C_site_50137 DeepMRMD:0.373426675796508;iRNA_m5C:0.000464199008589405 50138 chr19 46375466 46375466 1 + C G UCEC 46375466 - 46375446 46375486 41 CCAGGGGGGCTGCAGGTGCTGGGGGTGCCAGGGGTCCTGAG CCAGGGGGGCTGCAGGTGCTCGGGGTGCCAGGGGTCCTGAG Direct Gain 0 0.974268620855799 0 0.972796976566315 prediction 0.948537241711599 Functional Gain - FOXA3 ENSG00000170608 CDS Human protein_coding chr19:46375466 chr19:46375466 nonsynonymous SNV 0.664 1 21 hm5C_associated_SNPs_130080 0 0 0 0 0 Cytosol 0 0.500231643921092 0.94559395313263 0.000463287842184856 hm5C_site_50138 DeepMRMD:0.94559395313263;iRNA_m5C:0.000463287842184856 50139 chr12 90103218 90103218 1 + T C rs374231417 90103218 + 90103198 90103238 41 ACCGCGGCTCGGACCGGGACTGGGAGCTGAGCGGCACTGGG ACCGCGGCTCGGACCGGGACCGGGAGCTGAGCGGCACTGGG Direct Gain 0 0.974262428253877 0 0.92684018611908 prediction 0.948524856507753 Functional Gain - ATP2B1-AS1 ENSG00000271614 ncRNA_exonic Human lincRNA chr12:90103218 chr12:90103218 . . 0 21 hm5C_associated_SNPs_130081 0 0 0 0 0 unknown 0 0.50023167534743 0.85368037223816 0.000463350694859033 hm5C_site_50139 DeepMRMD:0.85368037223816;iRNA_m5C:0.000463350694859033 50140 chr4 185570899 185570899 1 + T C rs4647600 185570899 + 185570879 185570919 41 ATTTGAAATCTAGGTCTTCCTGAGAGTCCGCGGGCTTCCGC ATTTGAAATCTAGGTCTTCCCGAGAGTCCGCGGGCTTCCGC Direct Gain 0 0.974217841220341 0 0.925030827522278 prediction 0.948435682440682 Functional Gain - PRIMPOL ENSG00000164306 UTR5 Human protein_coding chr4:185570899 chr4:185570899 . . 0 21 hm5C_associated_SNPs_130082 0 0 1 0 0 chromatin 0 0.500231643921092 0.850061655044556 0.000463287842184856 hm5C_site_50140 DeepMRMD:0.850061655044556;iRNA_m5C:0.000463287842184856 50141 chr10 120863692 120863692 1 + T C rs143581957 120863692 + 120863672 120863712 41 GGCGGACACTCAGCTGATGCTTGGAGTCGGGCTGATCGGTG GGCGGACACTCAGCTGATGCCTGGAGTCGGGCTGATCGGTG Direct Gain 0 0.974174529516196 0 0.756062746047974 prediction 0.948349059032392 Functional Gain - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120863692 chr10:120863692 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_130083 0 0 1 0 1 Cytosol 0 0.50023255503347 0.512125492095948 0.0004651100669395 hm5C_site_50141 DeepMRMD:0.512125492095948;iRNA_m5C:0.0004651100669395 50142 chr9 139846851 139846851 1 + C G rs556102912 139846851 - 139846831 139846871 41 ATCGGGGGCGGGAGTGGCAGGGGGGTTGGGGTCTGGGCCTG ATCGGGGGCGGGAGTGGCAGCGGGGTTGGGGTCTGGGCCTG Direct Gain 0 0.974171282992929 0 0.973387718200684 prediction 0.948342565985857 Functional Gain - LCN12 ENSG00000184925 CDS Human protein_coding chr9:139846851 chr9:139846851 synonymous SNV . 0 21 hm5C_associated_SNPs_130084 0 0 0 0 0 exosome 0 0.500231643920856 0.946775436401368 0.000463287841711679 hm5C_site_50142 DeepMRMD:0.946775436401368;iRNA_m5C:0.000463287841711679 50143 chr5 130506715 130506715 1 + T C SKCM 130506715 + 130506695 130506735 41 GGCCGCGGTGAGGAGAGCCATGGGACGGGCAGTCAAGGTGA GGCCGCGGTGAGGAGAGCCACGGGACGGGCAGTCAAGGTGA Direct Gain 0 0.974163623643551 0 0.823519766330719 prediction 0.948327247287103 Functional Gain - LYRM7 ENSG00000186687 CDS Human protein_coding chr5:130506715 chr5:130506715 nonsynonymous SNV 0.831 4 21 hm5C_associated_SNPs_130085 0 0 1 0 1 Ribosome 0 0.500231639967177 0.647039532661438 0.0004632799343538 hm5C_site_50143 DeepMRMD:0.647039532661438;iRNA_m5C:0.0004632799343538 50144 chr4 94750279 94750279 1 + A G SKCM 94750279 - 94750259 94750299 41 CGTGCAGATGCCCTGCAAAGTGGGAGCCAGCCAGGCGCGTG CGTGCAGATGCCCTGCAAAGCGGGAGCCAGCCAGGCGCGTG Direct Gain 0 0.974117155755107 0 0.708971977233887 prediction 0.948234311510213 Functional Gain - ATOH1 ENSG00000172238 CDS Human protein_coding chr4:94750279 chr4:94750279 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_130086 0 0 0 0 0 unknown 0 0.500231747035251 0.417943954467774 0.000463494070502835 hm5C_site_50144 DeepMRMD:0.417943954467774;iRNA_m5C:0.000463494070502835 50145 chr6 130376371 130376371 1 + G C HNSC 130376371 + 130376351 130376391 41 GCAGAGAGCACGGAGGAAAAGACGAGGGGATTCGGCTGTAC GCAGAGAGCACGGAGGAAAACACGAGGGGATTCGGCTGTAC Direct Gain 0 0.974061050859823 0 0.375844389200211 prediction 0.948122101719645 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130376371 chr6:130376371 nonsynonymous SNV 0.959 2 21 hm5C_associated_SNPs_130087 0 0 1 0 1 nucleoplasm 0 0.500231643920758 0 0.000463287841516502 hm5C_site_50145 DeepMRMD:0;iRNA_m5C:0.000463287841516502 50146 chr3 101298701 101298701 1 + T C UCEC 101298701 + 101298681 101298721 41 TCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAA TCCAGTAATGGAGGGGAAAGCTCCAGTCGCAGCGCTGAGAA Direct Gain 0 0.974053233068713 0 0.916463971138 prediction 0.948106466137427 Functional Gain - PCNP ENSG00000081154 CDS Human protein_coding chr3:101298701 chr3:101298701 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_130088 0 0 1 0 2 chromatin 0 0.500231646411874 0.832927942276 0.000463292823747574 hm5C_site_50146 DeepMRMD:0.832927942276;iRNA_m5C:0.000463292823747574 50147 chr17 44067379 44067379 1 + A G BLCA 44067379 - 44067359 44067399 41 AGTGACAGAAGAGACGTATTTAGGAGAGGAAGGTGGCTCTG AGTGACAGAAGAGACGTATTCAGGAGAGGAAGGTGGCTCTG Direct Gain 0 0.973975103084621 0 0.913022577762604 prediction 0.947950206169242 Functional Gain - MAPT ENSG00000186868 CDS Human protein_coding chr17:44067379 chr17:44067379 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130089 0 0 0 0 0 cytosol 0 0.500231638753505 0.826045155525208 0.000463277507009696 hm5C_site_50147 DeepMRMD:0.826045155525208;iRNA_m5C:0.000463277507009696 50148 chr14 24605590 24605590 1 + A G rs543391712 24605590 - 24605570 24605610 41 CCCCGACTCGCGTGGGAGCCTGGGGGGCGGGTCGGGGATGC CCCCGACTCGCGTGGGAGCCCGGGGGGCGGGTCGGGGATGC Direct Gain 0 0.973947459977569 0 0.912261962890625 prediction 0.947894919955139 Functional Gain - PSME1 ENSG00000092010 intronic Human protein_coding chr14:24605590 chr14:24605590 . . 0 21 hm5C_associated_SNPs_130090 0 0 0 0 0 Ribosome 0 0.500231644283001 0.82452392578125 0.000463288566002307 hm5C_site_50148 DeepMRMD:0.82452392578125;iRNA_m5C:0.000463288566002307 50149 chr12 132271113 132271113 1 + T C rs7136643 132271113 + 132271093 132271133 41 AGCCGCAGCCCTGGGGCCAGTAGGAAGCGGACCCGCTCCAG AGCCGCAGCCCTGGGGCCAGCAGGAAGCGGACCCGCTCCAG Direct Gain 0 0.97393417660645 0 0.891401946544647 prediction 0.947868353212901 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132271113 chr12:132271113 synonymous SNV . 0 21 hm5C_associated_SNPs_130091 0 0 1 0 1 Nucleus 0 0.500231643921092 0.782803893089294 0.000463287842184856 hm5C_site_50149 DeepMRMD:0.782803893089294;iRNA_m5C:0.000463287842184856 50150 chrX 114540824 114540824 1 + G C ACC 114540824 + 114540804 114540844 41 AGAAGAATCAAGGCCAGTCAGAGGGGAACCAGCATCAATCA AGAAGAATCAAGGCCAGTCACAGGGGAACCAGCATCAATCA Direct Gain 0 0.973911056857803 0 0.87787938117981 prediction 0.947822113715606 Functional Gain - LUZP4 ENSG00000102021 CDS Human protein_coding chrX:114540824 chrX:114540824 nonsynonymous SNV 0.386 1 21 hm5C_associated_SNPs_130092 0 0 0 0 1 unknown 0 0.500216250688274 0.75575876235962 0.000432501376548489 hm5C_site_50150 DeepMRMD:0.75575876235962;iRNA_m5C:0.000432501376548489 50151 chr15 75641338 75641338 1 + C G LUAD 75641338 - 75641318 75641358 41 CCTCAGGGTTGCGGCTGACAGAGGACTTCTCCACGCAGCCG CCTCAGGGTTGCGGCTGACACAGGACTTCTCCACGCAGCCG Direct Gain 0 0.973895378419085 0 0.884985089302063 prediction 0.947790756838169 Functional Gain - NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75641338 chr15:75641338 nonsynonymous SNV 0.043 1 21 hm5C_associated_SNPs_130093 0 0 1 0 0 chromatin 0 0.500231643921091 0.769970178604126 0.000463287842182636 hm5C_site_50151 DeepMRMD:0.769970178604126;iRNA_m5C:0.000463287842182636 50152 chr11 18231434 18231434 1 + G C rs7128174 18231434 + 18231414 18231454 41 AGCTGTATGGCATCAAAACGGGGGATGCAATACTTCAGTTG AGCTGTATGGCATCAAAACGCGGGATGCAATACTTCAGTTG Direct Gain 0 0.973876733404141 0 0.815649151802063 prediction 0.947753466808281 Functional Gain - LOC494141 ENSG00000189332 CDS Human transcribed_unprocessed_pseudogene chr11:18231434 chr11:18231434 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_130094 0 0 0 1 0 unknown 0 0.500231643920689 0.631298303604126 0.000463287841378612 hm5C_site_50152 DeepMRMD:0.631298303604126;iRNA_m5C:0.000463287841378612 50153 chr16 54967445 54967445 1 + T C SKCM 54967445 + 54967425 54967465 41 GCCCATAGCCGGGCAAGCCCTAGGAGGCAGCCGGGCGTCGC GCCCATAGCCGGGCAAGCCCCAGGAGGCAGCCGGGCGTCGC Direct Gain 0 0.973812883301414 0 0.932920455932617 prediction 0.947625766602829 Functional Gain - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54967445 chr16:54967445 nonsynonymous SNV 0.815 0 21 hm5C_associated_SNPs_130095 0 0 0 0 0 exosome 0 0.500231643921092 0.865840911865234 0.000463287842184856 hm5C_site_50153 DeepMRMD:0.865840911865234;iRNA_m5C:0.000463287842184856 50154 chr11 1651205 1651205 1 + T C UCEC 1651205 + 1651185 1651225 41 GGCTCCGGCTGTGGAGGCTGTGGGGGCTGTGGCTCCGGCTG GGCTCCGGCTGTGGAGGCTGCGGGGGCTGTGGCTCCGGCTG Direct Gain 0 0.973804478122676 0 0.940612196922302 prediction 0.947608956245352 Functional Gain - KRTAP5-5 ENSG00000185940 CDS Human protein_coding chr11:1651205 chr11:1651205 synonymous SNV . 0 21 hm5C_associated_SNPs_130096 0 0 0 0 0 unknown 0 0.500231643250504 0.881224393844604 0.000463286501007465 hm5C_site_50154 DeepMRMD:0.881224393844604;iRNA_m5C:0.000463286501007465 50155 chr11 71276865 71276865 1 + G C STAD 71276865 + 71276845 71276885 41 AGGGGGACTGTGGCTCTTGTGGGGGCTCCAAAGGGGGCTGT AGGGGGACTGTGGCTCTTGTCGGGGCTCCAAAGGGGGCTGT Direct Gain 0 0.973783813885632 0 0.959924399852753 prediction 0.947567627771265 Functional Gain - KRTAP5-10 ENSG00000204572 CDS Human protein_coding chr11:71276865 chr11:71276865 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_130097 0 0 0 0 0 unknown 0 0.500231643921092 0.919848799705506 0.000463287842184856 hm5C_site_50155 DeepMRMD:0.919848799705506;iRNA_m5C:0.000463287842184856 50156 chr11 60694793 60694793 1 + C G CESC 60694793 - 60694773 60694813 41 TCTCAGATCGGGAGCTCAGAGAGGAGTTGGCAGGTGGGTAG TCTCAGATCGGGAGCTCAGACAGGAGTTGGCAGGTGGGTAG Direct Gain 0 0.973764055303148 0 0.644977211952209 prediction 0.947528110606296 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60694793 chr11:60694793 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_130098 0 0 0 0 0 Ribosome 0 0.500231643870246 0.289954423904418 0.000463287740491092 hm5C_site_50156 DeepMRMD:0.289954423904418;iRNA_m5C:0.000463287740491092 50157 chr8 21952048 21952048 1 + C G rs145561106 21952048 - 21952028 21952068 41 CCCTCCAGGGTCCCTGGGCTGGGGAGGGCCAGGCCGCACCT CCCTCCAGGGTCCCTGGGCTCGGGAGGGCCAGGCCGCACCT Direct Gain 0 0.973739379489935 0 0.951607882976532 prediction 0.947478758979871 Functional Gain - FAM160B2 ENSG00000158863 intronic Human protein_coding chr8:21952048 chr8:21952048 . . 0 21 hm5C_associated_SNPs_130099 0 0 0 0 0 chromatin 0 0.500231643921092 0.903215765953064 0.000463287842184856 hm5C_site_50157 DeepMRMD:0.903215765953064;iRNA_m5C:0.000463287842184856 50158 chr10 103920360 103920360 1 + G C LUSC 103920360 + 103920340 103920380 41 GGCGGTGGCCAGAAGCTTCTGACGAGAAAGGCTGACAGCAG GGCGGTGGCCAGAAGCTTCTCACGAGAAAGGCTGACAGCAG Direct Gain 0 0.973700172940974 0 0.802884459495544 prediction 0.947400345881949 Functional Gain - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103920360 chr10:103920360 synonymous SNV . 0 21 hm5C_associated_SNPs_130100 0 0 1 0 0 Nucleus 0 0.500231643921092 0.605768918991088 0.000463287842184856 hm5C_site_50158 DeepMRMD:0.605768918991088;iRNA_m5C:0.000463287842184856 50159 chr12 52627328 52627328 1 + C G BLCA 52627328 - 52627308 52627348 41 CCTGGCGCACCCGCTGGAGGGAGGGGTCGGCGTCCAGCCGC CCTGGCGCACCCGCTGGAGGCAGGGGTCGGCGTCCAGCCGC Direct Gain 0 0.9736394143439 0 0.828608393669128 prediction 0.947278828687799 Functional Gain - KRT7 ENSG00000135480 CDS Human protein_coding chr12:52627328 chr12:52627328 nonsynonymous SNV 0.984 1 21 hm5C_associated_SNPs_130101 0 0 0 0 0 Cytosol 0 0.50023164358379 0.657216787338256 0.000463287167580706 hm5C_site_50159 DeepMRMD:0.657216787338256;iRNA_m5C:0.000463287167580706 50160 chr22 51048705 51048705 1 + A G rs532501516 51048705 - 51048685 51048725 41 CCACCGGCCTCATGGACTCCTGGGAGACAAAGACGTGGCAG CCACCGGCCTCATGGACTCCCGGGAGACAAAGACGTGGCAG Direct Gain 0 0.973566174112304 0 0.921554028987885 prediction 0.947132348224608 Functional Gain - MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51048705 chr22:51048705 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130102 0 0 0 0 0 exosome 0 0.500231361079959 0.84310805797577 0.000462722159917606 hm5C_site_50160 DeepMRMD:0.84310805797577;iRNA_m5C:0.000462722159917606 50161 chr19 56206217 56206217 1 + A G PRAD 56206217 - 56206197 56206237 41 CGTCTTCCGGGTGGGGGGCGTGGGAGTTGGTGTGGCTGCAG CGTCTTCCGGGTGGGGGGCGCGGGAGTTGGTGTGGCTGCAG Direct Gain 0 0.973520905232099 0 0.901923000812531 prediction 0.947041810464198 Functional Gain - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56206217 chr19:56206217 nonsynonymous SNV 0.033 0 21 hm5C_associated_SNPs_130103 0 0 0 0 0 chromatin 0 0.50023359287315 0.803846001625062 0.000467185746299448 hm5C_site_50161 DeepMRMD:0.803846001625062;iRNA_m5C:0.000467185746299448 50162 chr5 94891059 94891059 1 + G C rs61733082 94891059 + 94891039 94891079 41 CGGAGCAGGGGAGCAGAGGCGGAGAGCAGCCAAAGCGCCCA CGGAGCAGGGGAGCAGAGGCCGAGAGCAGCCAAAGCGCCCA Direct Gain 0 0.973520374925024 0 0.797449588775635 prediction 0.947040749850049 Functional Gain - ARSK ENSG00000164291 CDS Human protein_coding chr5:94891059 chr5:94891059 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_130104 0 0 1 0 1 Ribosome 0 0.500231646626735 0.59489917755127 0.000463293253470498 hm5C_site_50162 DeepMRMD:0.59489917755127;iRNA_m5C:0.000463293253470498 50163 chr11 92616483 92616483 1 + C G LUAD 92616483 - 92616463 92616503 41 GGTGACACGGCGGGGAGGTTGGGGGCCACACTGCACACGAC GGTGACACGGCGGGGAGGTTCGGGGCCACACTGCACACGAC Direct Gain 0 0.973502687545695 0 0.959501385688782 prediction 0.94700537509139 Functional Gain - FAT3 ENSG00000165323 CDS Human protein_coding chr11:92616483 chr11:92616483 synonymous SNV . 0 21 hm5C_associated_SNPs_130105 0 0 0 0 0 nucleoplasm 0 0.500231643921086 0.919002771377564 0.0004632878421722 hm5C_site_50163 DeepMRMD:0.919002771377564;iRNA_m5C:0.0004632878421722 50164 chr19 54634980 54634980 1 + T C rs587720693 54634980 + 54634960 54635000 41 CCTGCCACTGGCCCCATTGCTGGGACTGCCCAGGGAGGAGG CCTGCCACTGGCCCCATTGCCGGGACTGCCCAGGGAGGAGG Direct Gain 0 0.973493320943914 0 0.877026379108429 prediction 0.946986641887828 Functional Gain - PRPF31 ENSG00000105618 UTR3 Human protein_coding chr19:54634980 chr19:54634980 . . 0 21 hm5C_associated_SNPs_130106 0 0 1 0 0 Cytosol 0 0.500231643921093 0.754052758216858 0.0004632878421853 hm5C_site_50164 DeepMRMD:0.754052758216858;iRNA_m5C:0.0004632878421853 50165 chr6 126070841 126070841 1 + G C rs546858828 126070841 + 126070821 126070861 41 CCTGCCCAGGCCCGGGGAGGGAGGAGGCGGGCGTCAGGGTG CCTGCCCAGGCCCGGGGAGGCAGGAGGCGGGCGTCAGGGTG Direct Gain 0 0.973489089712171 0 0.894388735294342 prediction 0.946978179424343 Functional Gain - HEY2 ENSG00000135547 UTR5 Human protein_coding chr6:126070841 chr6:126070841 . . 0 21 hm5C_associated_SNPs_130107 0 0 0 0 0 exosome 0 0.500231643921074 0.788777470588684 0.000463287842147553 hm5C_site_50165 DeepMRMD:0.788777470588684;iRNA_m5C:0.000463287842147553 50166 chr1 178062930 178062930 1 + A G rs1332947 178062930 - 178062910 178062950 41 GGTGGCGGTGGCGGTGGCGGTGGCGGCGGCGGCGGCGGCGG GGTGGCGGTGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGG Direct Gain 0 0.973485930205294 0 0.947643876075745 prediction 0.946971860410587 Functional Gain - RASAL2-AS1 ENSG00000224687 ncRNA_exonic Human lincRNA chr1:178062930 chr1:178062930 . . 0 21 hm5C_associated_SNPs_130108 0 0 0 0 0 unknown 0 0.500231643921092 0.89528775215149 0.000463287842184856 hm5C_site_50166 DeepMRMD:0.89528775215149;iRNA_m5C:0.000463287842184856 50167 chr17 17699590 17699590 1 + A G UCEC 17699590 - 17699570 17699610 41 AGGCAGGGCGGCCGGGTTGCTGGGGCTGGAGGCAGCCTTGG AGGCAGGGCGGCCGGGTTGCCGGGGCTGGAGGCAGCCTTGG Direct Gain 0 0.973399897283003 0 0.949217915534973 prediction 0.946799794566005 Functional Gain - RAI1 ENSG00000108557 CDS Human protein_coding chr17:17699590 chr17:17699590 nonsynonymous SNV 0.986 0 21 hm5C_associated_SNPs_130109 0 0 0 0 0 chromatin 0 0.500231643921092 0.898435831069946 0.000463287842184856 hm5C_site_50167 DeepMRMD:0.898435831069946;iRNA_m5C:0.000463287842184856 50168 chr9 111625276 111625276 1 + A G LIHC 111625276 - 111625256 111625296 41 CCTCGTAGATGGGGACCACGTAGGACACGCCATGGCCCACC CCTCGTAGATGGGGACCACGCAGGACACGCCATGGCCCACC Direct Gain 0 0.973357322081532 0 0.936971127986908 prediction 0.946714644163064 Functional Gain - ACTL7A ENSG00000187003 CDS Human protein_coding chr9:111625276 chr9:111625276 nonsynonymous SNV 0.954 2 21 hm5C_associated_SNPs_130110 0 0 0 0 0 unknown 0 0.500231653539326 0.873942255973816 0.000463307078651276 hm5C_site_50168 DeepMRMD:0.873942255973816;iRNA_m5C:0.000463307078651276 50169 chr16 67319064 67319064 1 + A G UCEC 67319064 - 67319044 67319084 41 GAGGCACAGTAGGGGATGCCTGGGGCAGGGCACCTCCTCCA GAGGCACAGTAGGGGATGCCCGGGGCAGGGCACCTCCTCCA Direct Gain 0 0.973220412607477 0 0.92771852016449 prediction 0.946440825214955 Functional Gain - PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67319064 chr16:67319064 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130111 0 0 0 0 0 Cytosol 0 0.500219821368129 0.85543704032898 0.000439642736258739 hm5C_site_50169 DeepMRMD:0.85543704032898;iRNA_m5C:0.000439642736258739 50170 chr6 99283871 99283871 1 + C G HNSC 99283871 - 99283851 99283891 41 GCCGAGGGCTTGGGGCATTTGAGGAAATGGCTCTCCAGAGC GCCGAGGGCTTGGGGCATTTCAGGAAATGGCTCTCCAGAGC Direct Gain 0 0.973208797280235 0 0.854894876480103 prediction 0.94641759456047 Functional Gain - POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283871 chr6:99283871 synonymous SNV . 0 21 hm5C_associated_SNPs_130112 0 0 0 0 0 exosome 0 0.500231643914133 0.709789752960206 0.00046328782826599 hm5C_site_50170 DeepMRMD:0.709789752960206;iRNA_m5C:0.00046328782826599 50171 chr11 1267515 1267515 1 + C G CESC 1267515 - 1267495 1267535 41 GCTGCTGTGGTCAGCTCTGTGAGGATCCAGGTCGTCCCCGG GCTGCTGTGGTCAGCTCTGTCAGGATCCAGGTCGTCCCCGG Direct Gain 0 0.973167831854998 0 0.973963737487793 prediction 0.946335663709996 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1267515 chr11:1267515 synonymous SNV . 0 21 hm5C_associated_SNPs_130113 0 0 0 0 0 Endoplasmic reticulum 0 0.50023165811575 0.947927474975586 0.000463316231500199 hm5C_site_50171 DeepMRMD:0.947927474975586;iRNA_m5C:0.000463316231500199 50172 chr1 26737909 26737909 1 + G C LUSC 26737909 + 26737889 26737929 41 AGGCGGCAGAAGAGGCGCCCGAGGAGGCGCCGGAGGACGCG AGGCGGCAGAAGAGGCGCCCCAGGAGGCGCCGGAGGACGCG Direct Gain 0 0.973049495810793 0 0.803097128868103 prediction 0.946098991621586 Functional Gain - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26737909 chr1:26737909 nonsynonymous SNV 0.982 1 21 hm5C_associated_SNPs_130114 0 0 0 0 1 Nucleus 0 0.500231643947636 0.606194257736206 0.000463287895271502 hm5C_site_50172 DeepMRMD:0.606194257736206;iRNA_m5C:0.000463287895271502 50173 chr17 30264357 30264357 1 + T C COAD 30264357 + 30264337 30264377 41 CTTCGGGGGTTCGGCGGCGGTGGCGGCGGCGACGGCTTCGG CTTCGGGGGTTCGGCGGCGGCGGCGGCGGCGACGGCTTCGG Direct Gain 0 0.972990929057669 0 0.890223562717438 prediction 0.945981858115338 Functional Gain - SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30264357 chr17:30264357 nonsynonymous SNV 0.980 1 21 hm5C_associated_SNPs_130115 0 0 1 0 0 Ribosome 0 0.500231547817112 0.780447125434876 0.00046309563422442 hm5C_site_50173 DeepMRMD:0.780447125434876;iRNA_m5C:0.00046309563422442 50174 chr8 1616675 1616675 1 + C G rs7463888 1616675 - 1616655 1616695 41 TGTTGCTGTCCAGGCTGTCCGTGGAGTTGTAGAGGCCGCGG TGTTGCTGTCCAGGCTGTCCCTGGAGTTGTAGAGGCCGCGG Direct Gain 0 0.972934675378751 0 0.914595007896423 prediction 0.945869350757503 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1616675 chr8:1616675 nonsynonymous SNV 0.989 2 21 hm5C_associated_SNPs_130116 0 0 0 0 0 nucleolus 0 0.500231741773073 0.829190015792846 0.000463483546146337 hm5C_site_50174 DeepMRMD:0.829190015792846;iRNA_m5C:0.000463483546146337 50175 chr11 55658776 55658776 1 + T C PAAD 55658776 + 55658756 55658796 41 TCACATCTGGCAAATATTATTGGGAGGTTCATATGGGGGAC TCACATCTGGCAAATATTATCGGGAGGTTCATATGGGGGAC Direct Gain 0 0.972928970541043 0 0.915541470050812 prediction 0.945857941082086 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55658776 chr11:55658776 nonsynonymous SNV 0.031 4 21 hm5C_associated_SNPs_130117 0 0 0 0 0 unknown 0 0.500231643921092 0.831082940101624 0.000463287842183968 hm5C_site_50175 DeepMRMD:0.831082940101624;iRNA_m5C:0.000463287842183968 50176 chr1 168148196 168148196 1 + G C rs189822568 168148196 + 168148176 168148216 41 GGCCGGCAGGGGGCGGGGCCGGGCATGGTAACGGCTCGGAA GGCCGGCAGGGGGCGGGGCCCGGCATGGTAACGGCTCGGAA Direct Gain 0 0.972918371811385 0 0.686509013175964 prediction 0.94583674362277 Functional Gain - TIPRL ENSG00000143155 UTR5 Human protein_coding chr1:168148196 chr1:168148196 . . 0 21 hm5C_associated_SNPs_130118 0 0 0 0 0 Ribosome 0 0.500231643921092 0.373018026351928 0.000463287842184856 hm5C_site_50176 DeepMRMD:0.373018026351928;iRNA_m5C:0.000463287842184856 50177 chr16 31129108 31129108 1 + C G rs201871085 31129108 - 31129088 31129128 41 AGAGACGCGGCCCGGGGATGGGGCGGTCCCCTCAGCGGCCG AGAGACGCGGCCCGGGGATGCGGCGGTCCCCTCAGCGGCCG Direct Gain 0 0.972868420452599 0 0.773009657859802 prediction 0.945736840905197 Functional Gain - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31129108 chr16:31129108 nonsynonymous SNV 0.950 0 21 hm5C_associated_SNPs_130119 0 0 0 0 0 Ribosome 0 0.500231643921314 0.546019315719604 0.000463287842628501 hm5C_site_50177 DeepMRMD:0.546019315719604;iRNA_m5C:0.000463287842628501 50178 chr12 57859009 57859009 1 + C G BLCA 57859009 - 57858989 57859029 41 TGGGAAGGGTCCCCGGGACTGAGGATGTGGGATCATCCCAC TGGGAAGGGTCCCCGGGACTCAGGATGTGGGATCATCCCAC Direct Gain 0 0.972863844735769 0 0.954684138298035 prediction 0.945727689471537 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57859009 chr12:57859009 nonsynonymous SNV 0.930 0 21 hm5C_associated_SNPs_130120 0 0 0 0 0 nucleoplasm 0 0.500231643921195 0.90936827659607 0.00046328784239047 hm5C_site_50178 DeepMRMD:0.90936827659607;iRNA_m5C:0.00046328784239047 50179 chr12 77158068 77158068 1 + T C UCEC 77158068 + 77158048 77158088 41 TGGCGGACGGCCCGGATGAGTACGATACCGAAGCGGGCTGT TGGCGGACGGCCCGGATGAGCACGATACCGAAGCGGGCTGT Direct Gain 0 0.972826566877397 0 0.498633146286011 prediction 0.945653133754794 Functional Gain - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77158068 chr12:77158068 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130121 0 0 1 1 1 Endoplasmic reticulum 0 0.500231622542364 0 0.000463245084727948 hm5C_site_50179 DeepMRMD:0;iRNA_m5C:0.000463245084727948 50180 chr22 42177789 42177789 1 + C G BLCA 42177789 - 42177769 42177809 41 GTGAGCAGCCAGGCAGAGCAGAGGAGTGCAGTCCTGGGAGA GTGAGCAGCCAGGCAGAGCACAGGAGTGCAGTCCTGGGAGA Direct Gain 0 0.972817725130221 0 0.802725315093994 prediction 0.945635450260442 Functional Gain - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42177789 chr22:42177789 synonymous SNV . 0 21 hm5C_associated_SNPs_130122 0 0 0 0 0 exosome 0 0.500254734407581 0.605450630187988 0.000509468815162117 hm5C_site_50180 DeepMRMD:0.605450630187988;iRNA_m5C:0.000509468815162117 50181 chr22 38211742 38211742 1 + A G HNSC 38211742 - 38211722 38211762 41 CGACAGCAGGTGGCAGACTGTTGGAGAAGAGGTATGGCCGG CGACAGCAGGTGGCAGACTGCTGGAGAAGAGGTATGGCCGG Direct Gain 0 0.97280475653062 0 0.861081600189209 prediction 0.94560951306124 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38211742 chr22:38211742 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_130123 0 0 0 0 0 Cytosol 0 0.500231643939939 0.722163200378418 0.000463287879877594 hm5C_site_50181 DeepMRMD:0.722163200378418;iRNA_m5C:0.000463287879877594 50182 chr6 26104332 26104332 1 + G C UCEC 26104332 + 26104312 26104352 41 GCATTTCCGGTCTTATCTATGAGGAGACTCGAGGTGTGCTT GCATTTCCGGTCTTATCTATCAGGAGACTCGAGGTGTGCTT Direct Gain 0 0.972776949820355 0 0.970421552658081 prediction 0.94555389964071 Functional Gain - HIST1H4C ENSG00000197061 CDS Human protein_coding chr6:26104332 chr6:26104332 nonsynonymous SNV 0.531 2 21 hm5C_associated_SNPs_130124 0 0 1 0 0 Ribosome 0 0.500214785101595 0.940843105316162 0.000429570203190899 hm5C_site_50182 DeepMRMD:0.940843105316162;iRNA_m5C:0.000429570203190899 50183 chr11 824777 824777 1 + C G rs142588621 824777 - 824757 824797 41 GCCCGGCCAGCTGGTGCTGCGGGGATGCTGGGTCCGCGGGG GCCCGGCCAGCTGGTGCTGCCGGGATGCTGGGTCCGCGGGG Direct Gain 0 0.972732263586624 0 0.968183994293213 prediction 0.945464527173248 Functional Gain - PNPLA2 ENSG00000177666 CDS Human protein_coding chr11:824777 chr11:824777 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_130125 2 0 0 0 0 Ribosome 0 0.500231643919427 0.936367988586426 0.000463287838854853 hm5C_site_50183 DeepMRMD:0.936367988586426;iRNA_m5C:0.000463287838854853 not specified not specified 50184 chrX 75648463 75648463 1 + A G CESC 75648463 - 75648443 75648483 41 TCTGGGAATCGCTGGGACCCTGGGGGACGTCTGAGCCTGGC TCTGGGAATCGCTGGGACCCCGGGGGACGTCTGAGCCTGGC Direct Gain 0 0.972720250339531 0 0.937663316726685 prediction 0.945440500679062 Functional Gain - MAGEE1 ENSG00000198934 CDS Human protein_coding chrX:75648463 chrX:75648463 nonsynonymous SNV 0.016 0 21 hm5C_associated_SNPs_130126 0 0 0 0 0 membrane 0 0.500231643921398 0.87532663345337 0.000463287842795701 hm5C_site_50184 DeepMRMD:0.87532663345337;iRNA_m5C:0.000463287842795701 50185 chr2 202030956 202030956 1 + C G rs13005591 202030956 - 202030936 202030976 41 GCCCGGCCAGCCGCCCCGTCGGGGAGGGAGGTGGGGGGTCA GCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGTCA Direct Gain 0 0.972712096334163 0 0.896014988422394 prediction 0.945424192668327 Functional Gain - CFLAR ENSG00000003402 UTR3 Human protein_coding chr2:202030956 chr2:202030956 . . 0 21 hm5C_associated_SNPs_130127 0 0 0 0 0 Cytosol 0 0.500232447178347 0.792029976844788 0.000464894356694501 hm5C_site_50185 DeepMRMD:0.792029976844788;iRNA_m5C:0.000464894356694501 50186 chr16 28507962 28507962 1 + G C STAD 28507962 + 28507942 28507982 41 GGCCTGAGGAGGAGCTCACAGGGGAGGAGAGTGAGGCGGCC GGCCTGAGGAGGAGCTCACACGGGAGGAGAGTGAGGCGGCC Direct Gain 0 0.972650368322947 0 0.870271444320679 prediction 0.945300736645894 Functional Gain - APOBR ENSG00000184730 CDS Human protein_coding chr16:28507962 chr16:28507962 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_130128 0 0 0 0 0 exosome 0 0.500231643921092 0.740542888641358 0.000463287842184634 hm5C_site_50186 DeepMRMD:0.740542888641358;iRNA_m5C:0.000463287842184634 50187 chr4 39046653 39046653 1 + C G rs550365512 39046653 - 39046633 39046673 41 GCGGCCAGGCGGGAGGAGCGGGGGAGGCGGGGGCCGGGGCC GCGGCCAGGCGGGAGGAGCGCGGGAGGCGGGGGCCGGGGCC Direct Gain 0 0.972639472037031 0 0.938202440738678 prediction 0.945278944074061 Functional Gain - KLHL5 ENSG00000109790 upstream Human protein_coding chr4:39046653 chr4:39046653 . . 0 21 hm5C_associated_SNPs_130129 0 0 0 0 0 Nucleus 0 0.500232274515099 0.876404881477356 0.000464549030198658 hm5C_site_50187 DeepMRMD:0.876404881477356;iRNA_m5C:0.000464549030198658 50188 chr18 43417625 43417625 1 + A G rs569081026 43417625 - 43417605 43417645 41 GGAACACCTGCGGGCCCGCATAGGGCTCGCCCGCGCGCCAG GGAACACCTGCGGGCCCGCACAGGGCTCGCCCGCGCGCCAG Direct Gain 0 0.97259304454145 0 0.790611147880554 prediction 0.9451860890829 Functional Gain - SIGLEC15 ENSG00000197046 CDS Human protein_coding chr18:43417625 chr18:43417625 nonsynonymous SNV 0.841 2 21 hm5C_associated_SNPs_130130 0 0 0 0 0 exosome 0 0.50023164392109 0.581222295761108 0.000463287842180415 hm5C_site_50188 DeepMRMD:0.581222295761108;iRNA_m5C:0.000463287842180415 50189 chr16 8829607 8829607 1 + T G PAAD 8829607 - 8829587 8829627 41 CCAGGCGCTGGGCGAGCAACATGGAGGCCATGACCCCTTGA CCAGGCGCTGGGCGAGCAACCTGGAGGCCATGACCCCTTGA Direct Gain 0 0.972514360224226 0 0.842265963554382 prediction 0.945028720448452 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8829607 chr16:8829607 nonsynonymous SNV 0.562 0 21 hm5C_associated_SNPs_130131 0 0 0 0 0 cytosol 0 0.500231646039955 0.684531927108764 0.00046329207991036 hm5C_site_50189 DeepMRMD:0.684531927108764;iRNA_m5C:0.00046329207991036 50190 chr5 178293284 178293284 1 + T C rs567321883 178293284 + 178293264 178293304 41 ACGTGGCTGTGCTCTTTACCTGGGATGAGTGGAGAAAGCTG ACGTGGCTGTGCTCTTTACCCGGGATGAGTGGAGAAAGCTG Direct Gain 0 0.972480695591558 0 0.914090871810913 prediction 0.944961391183117 Functional Gain - ZNF354B ENSG00000178338 CDS Human protein_coding chr5:178293284 chr5:178293284 nonsynonymous SNV 0.116 0 21 hm5C_associated_SNPs_130132 0 0 1 0 2 nucleoplasm 0 0.500231643921066 0.828181743621826 0.000463287842131566 hm5C_site_50190 DeepMRMD:0.828181743621826;iRNA_m5C:0.000463287842131566 50191 chr1 12856481 12856481 1 + T C rs564666932 12856481 + 12856461 12856501 41 CATAACAGCAGGGGGCAAGGTTGGAGGAAAATGTTGAGGTG CATAACAGCAGGGGGCAAGGCTGGAGGAAAATGTTGAGGTG Direct Gain 0 0.97245453342183 0 0.804629564285278 prediction 0.94490906684366 Functional Gain - PRAMEF1 ENSG00000116721 UTR3 Human protein_coding chr1:12856481 chr1:12856481 . . 0 21 hm5C_associated_SNPs_130133 0 0 0 0 0 unknown 0 0.500231643921092 0.609259128570556 0.000463287842184856 hm5C_site_50191 DeepMRMD:0.609259128570556;iRNA_m5C:0.000463287842184856 50192 chr11 66258775 66258775 1 + G C SKCM 66258775 + 66258755 66258795 41 GCTGAAGAGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGA GCTGAAGAGCTATGAATTCCCGGGAAGCCCTTTCCAGGTGA Direct Gain 0 0.972397951546954 0 0.888719439506531 prediction 0.944795903093908 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258775 chr11:66258775 nonsynonymous SNV 0.939 0 21 hm5C_associated_SNPs_130134 0 0 1 0 2 Nucleus 0 0.500231643921092 0.777438879013062 0.000463287842184856 hm5C_site_50192 DeepMRMD:0.777438879013062;iRNA_m5C:0.000463287842184856 50193 chr19 50189399 50189399 1 + C G SKCM 50189399 - 50189379 50189419 41 GCTTCACTTGCAGGCAGAACGGGGAGGTGAAGGTCAGGTCT GCTTCACTTGCAGGCAGAACCGGGAGGTGAAGGTCAGGTCT Direct Gain 0 0.972385381670924 0 0.94675886631012 prediction 0.944770763341847 Functional Gain - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50189399 chr19:50189399 nonsynonymous SNV 0.971 2 21 hm5C_associated_SNPs_130135 0 0 0 0 0 Cytosol 0 0.500231643743146 0.89351773262024 0.000463287486292208 hm5C_site_50193 DeepMRMD:0.89351773262024;iRNA_m5C:0.000463287486292208 50194 chr2 220283259 220283259 1 + A G rs1318299 220283259 - 220283239 220283279 41 GAACTCAGCGGGGAGCCGAGTGGGAAGCCCGGGGCCCCGCC GAACTCAGCGGGGAGCCGAGCGGGAAGCCCGGGGCCCCGCC Direct Gain 0 0.972380141621852 0 0.93900603055954 prediction 0.944760283243703 Functional Gain - DES ENSG00000175084 CDS Human protein_coding chr2:220283259 chr2:220283259 synonymous SNV . 0 21 hm5C_associated_SNPs_130136 8 0 0 0 0 nucleus 0 0.500231635657337 0.87801206111908 0.000463271314674385 hm5C_site_50194 DeepMRMD:0.87801206111908;iRNA_m5C:0.000463271314674385 not specified,Cardiomyopathy not specified,Cardiomyopathy 50195 chr7 6193464 6193464 1 + T G rs61732616 6193464 - 6193444 6193484 41 CGGCCGCATCTGGCTCCTCCAGGGATTCGGCGGCGGGGCTG CGGCCGCATCTGGCTCCTCCCGGGATTCGGCGGCGGGGCTG Direct Gain 0 0.972371696335237 0 0.980980217456818 prediction 0.944743392670474 Functional Gain - USP42 ENSG00000106346 CDS Human protein_coding chr7:6193464 chr7:6193464 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130137 0 0 0 0 0 Ribosome 0 0.500231643908213 0.961960434913636 0.00046328781642524 hm5C_site_50195 DeepMRMD:0.961960434913636;iRNA_m5C:0.00046328781642524 50196 chr11 57310143 57310143 1 + G C BLCA 57310143 + 57310123 57310163 41 AGAAGGAAGGGAAGCTCTCTGAGGATGGGACCACCGTCTCC AGAAGGAAGGGAAGCTCTCTCAGGATGGGACCACCGTCTCC Direct Gain 0 0.972361318649291 0 0.939595103263855 prediction 0.944722637298583 Functional Gain - SMTNL1 ENSG00000214872 CDS Human protein_coding chr11:57310143 chr11:57310143 nonsynonymous SNV 0.424 2 21 hm5C_associated_SNPs_130138 0 0 0 0 0 exosome 0 0.500231643921579 0.87919020652771 0.000463287843158078 hm5C_site_50196 DeepMRMD:0.87919020652771;iRNA_m5C:0.000463287843158078 50197 chr6 30140015 30140015 1 + C G rs142991113 30140015 - 30139995 30140035 41 GGCTCCTGGGTCTGGGCGTTGTGGAGGGTCACCTGCCCCGC GGCTCCTGGGTCTGGGCGTTCTGGAGGGTCACCTGCCCCGC Direct Gain 0 0.972360832277398 0 0.936772644519806 prediction 0.944721664554796 Functional Gain - TRIM15 ENSG00000204610 CDS Human protein_coding chr6:30140015 chr6:30140015 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130139 0 0 0 0 0 Endoplasmic reticulum 0 0.500231644053493 0.873545289039612 0.00046328810698526 hm5C_site_50197 DeepMRMD:0.873545289039612;iRNA_m5C:0.00046328810698526 50198 chr11 33106697 33106697 1 + T G STAD 33106697 - 33106677 33106717 41 TTCAGATGAAGATGAAGAAAAGGGAGCCGTTGTCCCCCCTG TTCAGATGAAGATGAAGAAACGGGAGCCGTTGTCCCCCCTG Direct Gain 0 0.972353369863343 0 0.889695048332214 prediction 0.944706739726685 Functional Gain - CSTF3 ENSG00000176102 CDS Human protein_coding chr11:33106697 chr11:33106697 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_130140 0 0 0 0 0 Cytosol 0 0.500231643921555 0.779390096664428 0.000463287843110116 hm5C_site_50198 DeepMRMD:0.779390096664428;iRNA_m5C:0.000463287843110116 50199 chr5 115298475 115298475 1 + T C rs12520255 115298475 + 115298455 115298495 41 GCTGCCTGGACTCAGGGACTTGGAAGCCGAGTCTTCCCCTC GCTGCCTGGACTCAGGGACTCGGAAGCCGAGTCTTCCCCTC Direct Gain 0 0.972236498660382 0 0.924471259117126 prediction 0.944472997320764 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115298475 chr5:115298475 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130141 0 0 0 0 0 Cytosol 0 0.500231643902912 0.848942518234252 0.00046328780582483 hm5C_site_50199 DeepMRMD:0.848942518234252;iRNA_m5C:0.00046328780582483 50200 chr3 9860146 9860146 1 + A G rs113116158 9860146 - 9860126 9860166 41 GCAGGAGAATGGCGGGAACCTGGGAGGCGGAGCTTGCAGTG GCAGGAGAATGGCGGGAACCCGGGAGGCGGAGCTTGCAGTG Direct Gain 0 0.972202054508293 0 0.954130053520203 prediction 0.944404109016586 Functional Gain - ARPC4-TTLL3;TTLL3 ENSG00000214021 UTR5 Human protein_coding chr3:9860146 chr3:9860146 . . 0 21 hm5C_associated_SNPs_130142 0 0 0 0 0 unknown 0 0.500231643921092 0.908260107040406 0.000463287842184856 hm5C_site_50200 DeepMRMD:0.908260107040406;iRNA_m5C:0.000463287842184856 50201 chr6 14131771 14131771 1 + G C BLCA 14131771 + 14131751 14131791 41 TTATTGGAGGGTGGTGAAGAGAGGATGGAGACACCCCAGGA TTATTGGAGGGTGGTGAAGACAGGATGGAGACACCCCAGGA Direct Gain 0 0.972184336394495 0 0.730854094028473 prediction 0.94436867278899 Functional Gain - CD83 ENSG00000112149 CDS Human protein_coding chr6:14131771 chr6:14131771 nonsynonymous SNV 0.289 0 21 hm5C_associated_SNPs_130143 0 0 0 0 1 exosome 0 0.500231643921092 0.461708188056946 0.000463287842184856 hm5C_site_50201 DeepMRMD:0.461708188056946;iRNA_m5C:0.000463287842184856 50202 chr1 155853082 155853082 1 + T C rs181161434 155853082 + 155853062 155853102 41 CGCCTGTAATCCCAGTATTTTGGGAGGCCGAGGTGGAAAGA CGCCTGTAATCCCAGTATTTCGGGAGGCCGAGGTGGAAAGA Direct Gain 0 0.97214873423308 0 0.914800405502319 prediction 0.94429746846616 Functional Gain - SYT11 ENSG00000132718 UTR3 Human protein_coding chr1:155853082 chr1:155853082 . . 0 21 hm5C_associated_SNPs_130144 0 0 0 0 0 Nucleus 0 0.500231639706032 0.829600811004638 0.000463279412064921 hm5C_site_50202 DeepMRMD:0.829600811004638;iRNA_m5C:0.000463279412064921 50203 chr19 39875332 39875332 1 + G C rs560640005 39875332 + 39875312 39875352 41 CAGGTGGAGGGAGGGGATTTGGGGGTTCAGACTGCGGGGAA CAGGTGGAGGGAGGGGATTTCGGGGTTCAGACTGCGGGGAA Direct Gain 0 0.97210798063031 0 0.953312039375305 prediction 0.944215961260621 Functional Gain - SAMD4B ENSG00000179134 UTR3 Human protein_coding chr19:39875332 chr19:39875332 . . 0 21 hm5C_associated_SNPs_130145 0 0 1 0 0 Ribosome 0 0.500231643921092 0.90662407875061 0.000463287842184856 hm5C_site_50203 DeepMRMD:0.90662407875061;iRNA_m5C:0.000463287842184856 50204 chr19 51647770 51647770 1 + A G rs114209391 51647770 - 51647750 51647790 41 GGTCCCCATCCAGGAGATCATAGGGGGCGTCCCCTGCTCAC GGTCCCCATCCAGGAGATCACAGGGGGCGTCCCCTGCTCAC Direct Gain 0 0.972102622033566 0 0.905871748924255 prediction 0.944205244067132 Functional Gain - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51647770 chr19:51647770 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130146 0 0 0 0 0 exosome 0 0.500231641660894 0.81174349784851 0.000463283321787911 hm5C_site_50204 DeepMRMD:0.81174349784851;iRNA_m5C:0.000463283321787911 50205 chr3 161147187 161147187 1 + T C rs545119571 161147187 + 161147167 161147207 41 GTGGTCAAGCTTGTTTCTCCTGGGAGCGCTCTTCCGAGGAT GTGGTCAAGCTTGTTTCTCCCGGGAGCGCTCTTCCGAGGAT Direct Gain 0 0.972022907093162 0 0.852578520774841 prediction 0.944045814186323 Functional Gain - LINC02067 ENSG00000234851;ENSG00000240567 ncRNA_exonic Human other chr3:161147187 chr3:161147187 . . 0 21 hm5C_associated_SNPs_130147 0 0 0 0 2 unknown 0 0.500231643921093 0.705157041549682 0.000463287842185078 hm5C_site_50205 DeepMRMD:0.705157041549682;iRNA_m5C:0.000463287842185078 50206 chr3 139062910 139062910 1 + G C BLCA 139062910 + 139062890 139062930 41 GTATTGCTGTGGAGCCTCTTGAGGAGTTCTCCGGGCGTGGA GTATTGCTGTGGAGCCTCTTCAGGAGTTCTCCGGGCGTGGA Direct Gain 0 0.971996607215852 0 0.947601675987244 prediction 0.943993214431704 Functional Gain - MRPS22 ENSG00000175110 CDS Human protein_coding chr3:139062910 chr3:139062910 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130148 0 0 1 0 0 Ribosome 0 0.500231638881113 0.895203351974488 0.000463277762226655 hm5C_site_50206 DeepMRMD:0.895203351974488;iRNA_m5C:0.000463277762226655 50207 chr7 53103674 53103674 1 + G C GBM 53103674 + 53103654 53103694 41 GGAGGCGCCCTGCCCTTCCCGGGGAGACCGCTCTGGGGCGA GGAGGCGCCCTGCCCTTCCCCGGGAGACCGCTCTGGGGCGA Direct Gain 0 0.971977702372119 0 0.950973629951477 prediction 0.943955404744238 Functional Gain - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103674 chr7:53103674 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_130149 0 0 0 0 0 unknown 0 0.500231648263337 0.901947259902954 0.000463296526674206 hm5C_site_50207 DeepMRMD:0.901947259902954;iRNA_m5C:0.000463296526674206 50208 chrX 55652042 55652042 1 + T C rs770019507 55652042 + 55652022 55652062 41 AACAAAGTGGATGGAGTGTTTGGGGGAATGGCATGAAGTTC AACAAAGTGGATGGAGTGTTCGGGGGAATGGCATGAAGTTC Direct Gain 0 0.971965040352538 0 0.929264903068542 prediction 0.943930080705076 Functional Gain - FOXR2 ENSG00000189299 UTR3 Human protein_coding chrX:55652042 chrX:55652042 . . 0 21 hm5C_associated_SNPs_130150 0 0 0 0 0 unknown 0 0.500231643920924 0.858529806137084 0.000463287841848903 hm5C_site_50208 DeepMRMD:0.858529806137084;iRNA_m5C:0.000463287841848903 50209 chr19 5153386 5153386 1 + C G rs560032386 5153386 - 5153366 5153406 41 GGCCGCCCAGGAGCCCACCAGGGGATGGGTGTGACCCCCAA GGCCGCCCAGGAGCCCACCACGGGATGGGTGTGACCCCCAA Direct Gain 0 0.971878931592873 0 0.879911780357361 prediction 0.943757863185747 Functional Gain - KDM4B ENSG00000127663 UTR3 Human protein_coding chr19:5153386 chr19:5153386 . . 0 21 hm5C_associated_SNPs_130151 0 0 0 0 0 Cytosol 0 0.500231643921092 0.759823560714722 0.000463287842184856 hm5C_site_50209 DeepMRMD:0.759823560714722;iRNA_m5C:0.000463287842184856 50210 chr21 47552153 47552153 1 + A G UCEC 47552153 - 47552133 47552173 41 GCACCACGCCTGCGCCCACGTGCGAGAAGGAGTTCAGGTAT GCACCACGCCTGCGCCCACGCGCGAGAAGGAGTTCAGGTAT Direct Gain 0 0.971876579648171 0 0.756191849708557 prediction 0.943753159296342 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47552153 chr21:47552153 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_130152 0 0 0 0 0 Cytosol 0 0.500233162148036 0.512383699417114 0.000466324296072962 hm5C_site_50210 DeepMRMD:0.512383699417114;iRNA_m5C:0.000466324296072962 50211 chr11 5411358 5411358 1 + G C CESC 5411358 + 5411338 5411378 41 TAGCAGGCCTGGCCTCCCAAGAGGAGCAGCGCCGTGCCTTT TAGCAGGCCTGGCCTCCCAACAGGAGCAGCGCCGTGCCTTT Direct Gain 0 0.971869442025575 0 0.905207872390747 prediction 0.94373888405115 Functional Gain - OR51M1 ENSG00000184698 CDS Human protein_coding chr11:5411358 chr11:5411358 nonsynonymous SNV 0.017 1 21 hm5C_associated_SNPs_130153 0 0 0 0 0 nucleoplasm 0 0.500231643921092 0.810415744781494 0.000463287842184856 hm5C_site_50211 DeepMRMD:0.810415744781494;iRNA_m5C:0.000463287842184856 50212 chr20 30919067 30919067 1 + C G BLCA 30919067 - 30919047 30919087 41 GCTGAGATGCAGGGGTTCCTGAGGAAGAGGAGGAGGATCCC GCTGAGATGCAGGGGTTCCTCAGGAAGAGGAGGAGGATCCC Direct Gain 0 0.971816680943521 0 0.95565402507782 prediction 0.943633361887041 Functional Gain - KIF3B ENSG00000101350 CDS Human protein_coding chr20:30919067 chr20:30919067 stopgain 1.000 0 21 hm5C_associated_SNPs_130154 0 0 0 0 0 Ribosome 0 0.500231643921093 0.91130805015564 0.000463287842186189 hm5C_site_50212 DeepMRMD:0.91130805015564;iRNA_m5C:0.000463287842186189 50213 chr16 29809711 29809711 1 + G C LUAD 29809711 + 29809691 29809731 41 GCAGGTTTGATGCCTTCTATGGGGAGAGGAGTACTCAGCAG GCAGGTTTGATGCCTTCTATCGGGAGAGGAGTACTCAGCAG Direct Gain 0 0.971812535916937 0 0.987464547157288 prediction 0.943625071833873 Functional Gain - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29809711 chr16:29809711 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130155 0 0 1 0 1 Cytosol 0 0.500231643921098 0.974929094314576 0.000463287842196847 hm5C_site_50213 DeepMRMD:0.974929094314576;iRNA_m5C:0.000463287842196847 50214 chr1 57347200 57347200 1 + G C BLCA 57347200 + 57347180 57347220 41 AGTGTGAGACGGTATACAATGGGGAATGGAGGGAGCTTCGA AGTGTGAGACGGTATACAATCGGGAATGGAGGGAGCTTCGA Direct Gain 0 0.971709021505372 0 0.844014644622803 prediction 0.943418043010744 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57347200 chr1:57347200 nonsynonymous SNV 0.973 4 21 hm5C_associated_SNPs_130156 0 0 1 0 1 cytosol 0 0.500231657471235 0.688029289245606 0.000463314942469095 hm5C_site_50214 DeepMRMD:0.688029289245606;iRNA_m5C:0.000463314942469095 50215 chr12 53685507 53685507 1 + C G BLCA 53685507 - 53685487 53685527 41 GGCCAGGGCCTGAATGTCCTGAGGGGTGAGGGCACCGGCAC GGCCAGGGCCTGAATGTCCTCAGGGGTGAGGGCACCGGCAC Direct Gain 0 0.971688081815936 0 0.971526741981506 prediction 0.943376163631872 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53685507 chr12:53685507 nonsynonymous SNV 0.061 0 21 hm5C_associated_SNPs_130157 0 0 0 0 0 Nucleus 0 0.500231643921092 0.943053483963012 0.000463287842184856 hm5C_site_50215 DeepMRMD:0.943053483963012;iRNA_m5C:0.000463287842184856 50216 chr1 19584431 19584431 1 + T G GBM 19584431 - 19584411 19584451 41 GCTGCCTGAGCTGTGGCTCCATGGAGTGGGGGAACTGCTCC GCTGCCTGAGCTGTGGCTCCCTGGAGTGGGGGAACTGCTCC Direct Gain 0 0.971684929770868 0 0.907705545425415 prediction 0.943369859541736 Functional Gain - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19584431 chr1:19584431 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130158 0 0 0 0 0 Ribosome 0 0.500231643921093 0.81541109085083 0.000463287842185967 hm5C_site_50216 DeepMRMD:0.81541109085083;iRNA_m5C:0.000463287842185967 50217 chr4 148944475 148944475 1 + C G HNSC 148944475 - 148944455 148944495 41 ACTGCCTTGGTGGCGCATTTGGGGGTGATGCTGACAGGCAG ACTGCCTTGGTGGCGCATTTCGGGGTGATGCTGACAGGCAG Direct Gain 0 0.971680799555455 0 0.970476865768433 prediction 0.94336159911091 Functional Gain - ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148944475 chr4:148944475 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_130159 0 0 0 0 0 Nucleus 0 0.500231643907061 0.940953731536866 0.000463287814121527 hm5C_site_50217 DeepMRMD:0.940953731536866;iRNA_m5C:0.000463287814121527 50218 chr11 212613 212613 1 + A G STAD 212613 - 212593 212633 41 CCCGCAGAGGGGGCAGCACCTGGGGAGGTGGCCATCCCTAA CCCGCAGAGGGGGCAGCACCCGGGGAGGTGGCCATCCCTAA Direct Gain 0 0.971660511803814 0 0.964558601379395 prediction 0.943321023607627 Functional Gain - RIC8A;RIC8A ENSG00000177963;ENSG00000177963 exonic;splicing Human other chr11:212613 chr11:212613 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_130160 0 0 0 0 0 unknown 0 0.500231643921092 0.92911720275879 0.000463287842184856 hm5C_site_50218 DeepMRMD:0.92911720275879;iRNA_m5C:0.000463287842184856 50219 chr12 94543105 94543105 1 + G C rs146929512 94543105 + 94543085 94543125 41 GCGAGGGGGCGGCCGGCCTCGGGGGGCTGCTGCTCACCGGC GCGAGGGGGCGGCCGGCCTCCGGGGGCTGCTGCTCACCGGC Direct Gain 0 0.971605835374275 0 0.986714124679565 prediction 0.943211670748551 Functional Gain - PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94543105 chr12:94543105 nonsynonymous SNV 0.981 0 21 hm5C_associated_SNPs_130161 0 0 0 0 0 chromatin 0 0.500231644791519 0.97342824935913 0.000463289583037207 hm5C_site_50219 DeepMRMD:0.97342824935913;iRNA_m5C:0.000463289583037207 50220 chr9 977286 977286 1 + A G LUAD 977286 - 977266 977306 41 TCCCCCGGCGGCGGGGGCCCTGGCAGAGCGCGCAGCGAGTC TCCCCCGGCGGCGGGGGCCCCGGCAGAGCGCGCAGCGAGTC Direct Gain 0 0.971603866692569 0 0.724732935428619 prediction 0.943207733385139 Functional Gain - DMRT3 ENSG00000064218 CDS Human protein_coding chr9:977286 chr9:977286 synonymous SNV . 0 21 hm5C_associated_SNPs_130162 0 0 0 0 0 unknown 0 0.500231650728955 0.449465870857238 0.000463301457909626 hm5C_site_50220 DeepMRMD:0.449465870857238;iRNA_m5C:0.000463301457909626 50221 chr8 42195998 42195998 1 + C G rs552782710 42195998 - 42195978 42196018 41 GAACAATGGTTGCCCCCGATGGGGGGCGGGGCGCACGGCGC GAACAATGGTTGCCCCCGATCGGGGGCGGGGCGCACGGCGC Direct Gain 0 0.971539838715227 0 0.992226004600525 prediction 0.943079677430454 Functional Gain - POLB ENSG00000070501 UTR5 Human protein_coding chr8:42195998 chr8:42195998 . . 0 21 hm5C_associated_SNPs_130163 0 0 0 0 0 Cytosol 0 0.500231643921092 0.98445200920105 0.000463287842184856 hm5C_site_50221 DeepMRMD:0.98445200920105;iRNA_m5C:0.000463287842184856 50222 chr3 133524738 133524738 1 + G C DLBC 133524738 + 133524718 133524758 41 TGGCAGATGGCGGCGGTGCCGGGGGCACCTTCCAGCCCTAC TGGCAGATGGCGGCGGTGCCCGGGGCACCTTCCAGCCCTAC Direct Gain 0 0.971525090233696 0 0.926037073135376 prediction 0.943050180467393 Functional Gain - SRPRB ENSG00000144867 CDS Human protein_coding chr3:133524738 chr3:133524738 nonsynonymous SNV 0.181 0 21 hm5C_associated_SNPs_130164 0 0 1 0 0 Ribosome 0 0.500231643921092 0.852074146270752 0.000463287842184856 hm5C_site_50222 DeepMRMD:0.852074146270752;iRNA_m5C:0.000463287842184856 50223 chr6 158902251 158902251 1 + C G LUAD 158902251 - 158902231 158902271 41 TTGCTGATGCGCCGCCCTTTGAGGATGGGCACAAGCCCGCC TTGCTGATGCGCCGCCCTTTCAGGATGGGCACAAGCCCGCC Direct Gain 0 0.971455879826557 0 0.965401172637939 prediction 0.942911759653115 Functional Gain - TULP4 ENSG00000130338 CDS Human protein_coding chr6:158902251 chr6:158902251 synonymous SNV . 0 21 hm5C_associated_SNPs_130165 0 0 0 0 0 Ribosome 0 0.500231643921092 0.930802345275878 0.000463287842184856 hm5C_site_50223 DeepMRMD:0.930802345275878;iRNA_m5C:0.000463287842184856 50224 chr11 67377958 67377958 1 + G C BLCA 67377958 + 67377938 67377978 41 CGGGGCTGGGGCCTACATCTGTGGAGAGGAGACAGCGCTCA CGGGGCTGGGGCCTACATCTCTGGAGAGGAGACAGCGCTCA Direct Gain 0 0.971448011093533 0 0.942551851272583 prediction 0.942896022187065 Functional Gain - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67377958 chr11:67377958 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_130166 0 0 1 0 1 Ribosome 0 0.500231644693433 0.885103702545166 0.000463289386865684 hm5C_site_50224 DeepMRMD:0.885103702545166;iRNA_m5C:0.000463289386865684 50225 chr17 73518335 73518335 1 + G C rs577958629 73518335 + 73518315 73518355 41 CTGCAGCGGCGGCAGGTGCAGAGGAGCCAGCGCCGGGCCCC CTGCAGCGGCGGCAGGTGCACAGGAGCCAGCGCCGGGCCCC Direct Gain 0 0.971420364920546 0 0.841316878795624 prediction 0.942840729841092 Functional Gain - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73518335 chr17:73518335 nonsynonymous SNV 0.028 1 21 hm5C_associated_SNPs_130167 0 0 1 0 1 Cytosol 0 0.500231644062132 0.682633757591248 0.000463288124263217 hm5C_site_50225 DeepMRMD:0.682633757591248;iRNA_m5C:0.000463288124263217 50226 chr8 54791841 54791841 1 + A G STAD 54791841 - 54791821 54791861 41 TTCGGGGCGGCGGGCGAGTCTGGGAGCTGTGCAGGCGGGAA TTCGGGGCGGCGGGCGAGTCCGGGAGCTGTGCAGGCGGGAA Direct Gain 0 0.97140367213461 0 0.88710606098175 prediction 0.942807344269221 Functional Gain - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54791841 chr8:54791841 synonymous SNV . 0 21 hm5C_associated_SNPs_130168 0 0 0 0 0 chromatin 0 0.500231643921305 0.7742121219635 0.000463287842609628 hm5C_site_50226 DeepMRMD:0.7742121219635;iRNA_m5C:0.000463287842609628 50227 chr20 61436347 61436347 1 + G C rs560795439 61436347 + 61436327 61436367 41 GGGACGAGGACGAGGAGTCGGAGGAGCCGCGGGCGGCGCGG GGGACGAGGACGAGGAGTCGCAGGAGCCGCGGGCGGCGCGG Direct Gain 0 0.971398915406765 0 0.948953866958618 prediction 0.942797830813531 Functional Gain - OGFR ENSG00000060491 CDS Human protein_coding chr20:61436347 chr20:61436347 nonsynonymous SNV 0.246 0 21 hm5C_associated_SNPs_130169 0 0 1 0 1 Ribosome 0 0.500231630442149 0.897907733917236 0.000463260884298045 hm5C_site_50227 DeepMRMD:0.897907733917236;iRNA_m5C:0.000463260884298045 50228 chr6 160328137 160328137 1 + T C STAD 160328137 + 160328117 160328157 41 CCAGTGGGGTTTGTTGAGAATGGGATTCTCCTCTGGTTCCT CCAGTGGGGTTTGTTGAGAACGGGATTCTCCTCTGGTTCCT Direct Gain 0 0.971388032047592 0 0.726835608482361 prediction 0.942776064095183 Functional Gain - MAS1 ENSG00000130368 CDS Human protein_coding chr6:160328137 chr6:160328137 synonymous SNV . 0 21 hm5C_associated_SNPs_130170 0 0 0 0 0 exosome 0 0.500231643921092 0.453671216964722 0.000463287842184856 hm5C_site_50228 DeepMRMD:0.453671216964722;iRNA_m5C:0.000463287842184856 50229 chr2 220347867 220347867 1 + C G rs376671564 220347867 - 220347847 220347887 41 GGGGGGGCCCGCAGCAGCTCGGGGATGGGGCGCAGCACCAG GGGGGGGCCCGCAGCAGCTCCGGGATGGGGCGCAGCACCAG Direct Gain 0 0.971370731965396 0 0.932579874992371 prediction 0.942741463930792 Functional Gain - SPEG ENSG00000072195 CDS Human protein_coding chr2:220347867 chr2:220347867 synonymous SNV . 0 21 hm5C_associated_SNPs_130171 0 0 0 0 0 Nucleus 0 0.500231643921098 0.865159749984742 0.000463287842196625 hm5C_site_50229 DeepMRMD:0.865159749984742;iRNA_m5C:0.000463287842196625 50230 chr19 45285644 45285644 1 + C G BLCA 45285644 - 45285624 45285664 41 GCCAGGAGCTGCCAGTTCTTGAGGAGTGTTGGCCATGGCTG GCCAGGAGCTGCCAGTTCTTCAGGAGTGTTGGCCATGGCTG Direct Gain 0 0.971243369065381 0 0.803741216659546 prediction 0.942486738130762 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45285644 chr19:45285644 synonymous SNV . 0 21 hm5C_associated_SNPs_130172 0 0 0 0 0 Ribosome 0 0.500205373784362 0.607482433319092 0.000410747568724723 hm5C_site_50230 DeepMRMD:0.607482433319092;iRNA_m5C:0.000410747568724723 50231 chr21 37692496 37692496 1 + C G rs371608302 37692496 - 37692476 37692516 41 TGGGAGGTGGCGGAACGACTGTGGAGCCCTATGGGTACCGC TGGGAGGTGGCGGAACGACTCTGGAGCCCTATGGGTACCGC Direct Gain 0 0.971215199986424 0 0.883593797683716 prediction 0.942430399972847 Functional Gain - MORC3 ENSG00000273199 ncRNA_exonic Human antisense chr21:37692496 chr21:37692496 . . 0 21 hm5C_associated_SNPs_130173 0 0 0 0 0 Cytosol 0 0.500231643921071 0.767187595367432 0.000463287842142224 hm5C_site_50231 DeepMRMD:0.767187595367432;iRNA_m5C:0.000463287842142224 50232 chr19 1258042 1258042 1 + C G rs567549081 1258042 - 1258022 1258062 41 GCGGGGCGGAGGGCAGGCTGGGGGGGTAGTTCCCCTCTCCC GCGGGGCGGAGGGCAGGCTGCGGGGGTAGTTCCCCTCTCCC Direct Gain 0 0.971181403315783 0 0.944705545902252 prediction 0.942362806631566 Functional Gain - MIDN ENSG00000167470 UTR3 Human protein_coding chr19:1258042 chr19:1258042 . . 0 21 hm5C_associated_SNPs_130174 0 0 0 0 0 chromatin 0 0.500231643921088 0.889411091804504 0.000463287842176197 hm5C_site_50232 DeepMRMD:0.889411091804504;iRNA_m5C:0.000463287842176197 50233 chr2 220097300 220097300 1 + T C UCEC 220097300 + 220097280 220097320 41 GATCGGGAGAGGGCTACATTTGAGAAGTTGAGCCGACCCCC GATCGGGAGAGGGCTACATTCGAGAAGTTGAGCCGACCCCC Direct Gain 0 0.971146618953748 0 0.943705677986145 prediction 0.942293237907496 Functional Gain - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220097300 chr2:220097300 synonymous SNV . 0 21 hm5C_associated_SNPs_130175 0 0 1 0 1 chromatin 0 0.500231643921092 0.88741135597229 0.000463287842184412 hm5C_site_50233 DeepMRMD:0.88741135597229;iRNA_m5C:0.000463287842184412 50234 chr10 134351406 134351406 1 + A C rs540258601 134351406 + 134351386 134351426 41 CGGGCGCGGGGCCGCGGAGCAGCGAGCGAGCGAGCGAGCGC CGGGCGCGGGGCCGCGGAGCCGCGAGCGAGCGAGCGAGCGC Direct Gain 0 0.971084748041463 0 0.754539132118225 prediction 0.942169496082926 Functional Gain - INPP5A ENSG00000068383 UTR5 Human protein_coding chr10:134351406 chr10:134351406 . . 0 21 hm5C_associated_SNPs_130176 0 0 1 0 0 Nucleus 0 0.500231643828218 0.50907826423645 0.000463287656435662 hm5C_site_50234 DeepMRMD:0.50907826423645;iRNA_m5C:0.000463287656435662 50235 chr2 132259080 132259080 1 + A G rs151103273 132259080 - 132259060 132259100 41 TAACAAAGGGCAGCCTTACCTGGGAGGCGGTGAGGGGCTGG TAACAAAGGGCAGCCTTACCCGGGAGGCGGTGAGGGGCTGG Direct Gain 0 0.97100456784509 0 0.953457295894623 prediction 0.942009135690181 Functional Gain - LOC150776 ENSG00000152117 ncRNA_exonic Human transcribed_processed_pseudogene chr2:132259080 chr2:132259080 . . 0 21 hm5C_associated_SNPs_130177 0 0 0 0 0 unknown 0 0.500231643921092 0.906914591789246 0.000463287842184856 hm5C_site_50235 DeepMRMD:0.906914591789246;iRNA_m5C:0.000463287842184856 50236 chr4 1730313 1730313 1 + C G rs142988385 1730313 - 1730293 1730333 41 AGCCCCGAGAAGCTGGCATGGGGGGGTCCTCTCCTGCTCCG AGCCCCGAGAAGCTGGCATGCGGGGGTCCTCTCCTGCTCCG Direct Gain 0 0.97096985426809 0 0.960861682891846 prediction 0.94193970853618 Functional Gain - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1730313 chr4:1730313 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_130178 0 0 0 0 0 Cytosol 0 0.500231643921095 0.921723365783692 0.000463287842189963 hm5C_site_50236 DeepMRMD:0.921723365783692;iRNA_m5C:0.000463287842189963 50237 chr7 149481149 149481149 1 + C G HNSC 149481149 - 149481129 149481169 41 AGCTGGCAGGGGCACAAGCTGGGGGGCACACACTGGCCCTC AGCTGGCAGGGGCACAAGCTCGGGGGCACACACTGGCCCTC Direct Gain 0 0.970969807408316 0 0.977934002876282 prediction 0.941939614816632 Functional Gain - SSPO ENSG00000197558 ncRNA_exonic Human protein_coding chr7:149481149 chr7:149481149 . . 0 21 hm5C_associated_SNPs_130179 0 0 0 0 0 chromatin 0 0.500231643921092 0.955868005752564 0.000463287842184856 hm5C_site_50237 DeepMRMD:0.955868005752564;iRNA_m5C:0.000463287842184856 50238 chr5 140589987 140589987 1 + T G OV 140589987 - 140589967 140590007 41 TGTCCGCGTTGATGGAGACCAGGGAGGCGAGGGGCAGGTGC TGTCCGCGTTGATGGAGACCCGGGAGGCGAGGGGCAGGTGC Direct Gain 0 0.970922560577847 0 0.868933796882629 prediction 0.941845121155694 Functional Gain - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140589987 chr5:140589987 nonsynonymous SNV 0.000 3 21 hm5C_associated_SNPs_130180 0 0 0 0 0 exosome 0 0.500231644231629 0.737867593765258 0.000463288463258049 hm5C_site_50238 DeepMRMD:0.737867593765258;iRNA_m5C:0.000463288463258049 50239 chr7 5112749 5112749 1 + A G UCEC 5112749 - 5112729 5112769 41 GCGTTGAGGCCCACACTCCTTGGGAGTGGACAGGGAAAGCC GCGTTGAGGCCCACACTCCTCGGGAGTGGACAGGGAAAGCC Direct Gain 0 0.970868665333973 0 0.839301109313965 prediction 0.941737330667946 Functional Gain - RBAKDN ENSG00000272968 CDS Human protein_coding chr7:5112749 chr7:5112749 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_130181 0 0 0 0 0 unknown 0 0.500231643921092 0.67860221862793 0.000463287842184856 hm5C_site_50239 DeepMRMD:0.67860221862793;iRNA_m5C:0.000463287842184856 50240 chr14 37667138 37667138 1 + C G rs560338567 37667138 - 37667118 37667158 41 GGCGGCGCGTGGGGCCTACGGGGCGGCGGCGCGCCGCAGGG GGCGGCGCGTGGGGCCTACGCGGCGGCGGCGCGCCGCAGGG Direct Gain 0 0.970797394643419 0 0.873360812664032 prediction 0.941594789286838 Functional Gain - MIPOL1 ENSG00000151338 UTR5 Human protein_coding chr14:37667138 chr14:37667138 . . 0 21 hm5C_associated_SNPs_130182 0 0 0 0 0 chromatin 0 0.500231643921092 0.746721625328064 0.000463287842184856 hm5C_site_50240 DeepMRMD:0.746721625328064;iRNA_m5C:0.000463287842184856 50241 chrX 47270144 47270144 1 + G C CESC 47270144 + 47270124 47270164 41 GAGAAGAGCTGTGGATATTAGAGGAGGAATCCTCAGGCCAT GAGAAGAGCTGTGGATATTACAGGAGGAATCCTCAGGCCAT Direct Gain 0 0.970765619416776 0 0.88253653049469 prediction 0.941531238833551 Functional Gain - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47270144 chrX:47270144 nonsynonymous SNV 0.931 1 21 hm5C_associated_SNPs_130183 0 0 0 0 2 exosome 0 0.500231643921093 0.76507306098938 0.000463287842185744 hm5C_site_50241 DeepMRMD:0.76507306098938;iRNA_m5C:0.000463287842185744 50242 chr4 75959144 75959144 1 + T C SKCM 75959144 + 75959124 75959164 41 TGCCGTGGTGCTGCTGGTGTTTGGAGTTGCAGCCTACCTAA TGCCGTGGTGCTGCTGGTGTCTGGAGTTGCAGCCTACCTAA Direct Gain 0 0.97070437039603 0 0.872188925743103 prediction 0.94140874079206 Functional Gain - PARM1 ENSG00000169116 CDS Human protein_coding chr4:75959144 chr4:75959144 nonsynonymous SNV 0.927 4 21 hm5C_associated_SNPs_130184 0 0 1 0 2 exosome 0 0.500233699280581 0.744377851486206 0.000467398561162291 hm5C_site_50242 DeepMRMD:0.744377851486206;iRNA_m5C:0.000467398561162291 50243 chr11 62656097 62656097 1 + C G HNSC 62656097 - 62656077 62656117 41 TTTCAGGCGTTCCAGCTCAAGAGGGGAGCCCTCCTCACGGC TTTCAGGCGTTCCAGCTCAACAGGGGAGCCCTCCTCACGGC Direct Gain 0 0.970690575222429 0 0.943745791912079 prediction 0.941381150444858 Functional Gain - SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62656097 chr11:62656097 nonsynonymous SNV 0.015 1 21 hm5C_associated_SNPs_130185 0 0 0 0 0 Nucleus 0 0.500231643921092 0.887491583824158 0.000463287842184856 hm5C_site_50243 DeepMRMD:0.887491583824158;iRNA_m5C:0.000463287842184856 50244 chr6 155577773 155577773 1 + A G STAD 155577773 - 155577753 155577793 41 TTTCCCGGGAGAAGTGCTCTTGGAGTCCTGCCTGCCCTCAG TTTCCCGGGAGAAGTGCTCTCGGAGTCCTGCCTGCCCTCAG Direct Gain 0 0.970684694795925 0 0.97629451751709 prediction 0.94136938959185 Functional Gain - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155577773 chr6:155577773 nonsynonymous SNV 0.088 0 21 hm5C_associated_SNPs_130186 0 0 1 0 0 Cytosol 0 0.500231643921092 0.95258903503418 0.000463287842184856 hm5C_site_50244 DeepMRMD:0.95258903503418;iRNA_m5C:0.000463287842184856 50245 chr6 31138212 31138212 1 + T C UCEC 31138212 + 31138192 31138232 41 AACTCATACGGCGGGGGGCATGGGGGAATCCCCCACACCTC AACTCATACGGCGGGGGGCACGGGGGAATCCCCCACACCTC Direct Gain 0 0.970681843898621 0 0.926083445549011 prediction 0.941363687797242 Functional Gain - POU5F1 ENSG00000204531 CDS Human protein_coding chr6:31138212 chr6:31138212 synonymous SNV . 0 21 hm5C_associated_SNPs_130187 0 0 0 0 0 chromatin 0 0.500231643921092 0.852166891098022 0.000463287842184856 hm5C_site_50245 DeepMRMD:0.852166891098022;iRNA_m5C:0.000463287842184856 50246 chr16 2524140 2524140 1 + A G rs182426816 2524140 - 2524120 2524160 41 GGTGAACGTGCGCCTAGATGTGGGAGCAGCGGCCGCCCTGC GGTGAACGTGCGCCTAGATGCGGGAGCAGCGGCCGCCCTGC Direct Gain 0 0.970667126800212 0 0.955430030822754 prediction 0.941334253600425 Functional Gain - NTN3 ENSG00000162068 UTR3 Human protein_coding chr16:2524140 chr16:2524140 . . 0 21 hm5C_associated_SNPs_130188 0 0 1 0 0 exosome 0 0.500231643921085 0.910860061645508 0.000463287842170867 hm5C_site_50246 DeepMRMD:0.910860061645508;iRNA_m5C:0.000463287842170867 50247 chr6 43251485 43251485 1 + C G rs201098083 43251485 - 43251465 43251505 41 CATCTCTGAGGGGGTTTCCCGGGGGGCCCCAGACAGGGCAG CATCTCTGAGGGGGTTTCCCCGGGGGCCCCAGACAGGGCAG Direct Gain 0 0.970578678659551 0 0.963153421878815 prediction 0.941157357319102 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43251485 chr6:43251485 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130189 0 0 0 0 0 exosome 0 0.500231643921092 0.92630684375763 0.000463287842184856 hm5C_site_50247 DeepMRMD:0.92630684375763;iRNA_m5C:0.000463287842184856 50248 chr11 64121542 64121542 1 + T G GBM 64121542 - 64121522 64121562 41 GCCCCCAGGCGCAGCCCCCCAGGGGGGCCCCCCTCCCGCCG GCCCCCAGGCGCAGCCCCCCCGGGGGGCCCCCCTCCCGCCG Direct Gain 0 0.970545175028575 0 0.96759307384491 prediction 0.94109035005715 Functional Gain - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64121542 chr11:64121542 synonymous SNV . 0 21 hm5C_associated_SNPs_130190 0 0 0 0 0 Ribosome 0 0.500231643921093 0.93518614768982 0.000463287842185078 hm5C_site_50248 DeepMRMD:0.93518614768982;iRNA_m5C:0.000463287842185078 50249 chr19 36210860 36210860 1 + A G UCEC 36210860 - 36210840 36210880 41 ATGCCCGGCTCCGGGGTGCTTGGGGTGCCTGGGCCCGCCGG ATGCCCGGCTCCGGGGTGCTCGGGGTGCCTGGGCCCGCCGG Direct Gain 0 0.970530611716197 0 0.987368583679199 prediction 0.941061223432395 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36210860 chr19:36210860 nonsynonymous SNV 0.721 2 21 hm5C_associated_SNPs_130191 0 0 0 0 0 chromatin 0 0.500231643921153 0.974737167358398 0.000463287842306759 hm5C_site_50249 DeepMRMD:0.974737167358398;iRNA_m5C:0.000463287842306759 50250 chr12 58174306 58174306 1 + T C rs923829 58174306 + 58174286 58174326 41 TCCAAGATGAGAAAGGAGCATGGGACAGAGAGCTTCTTTCA TCCAAGATGAGAAAGGAGCACGGGACAGAGAGCTTCTTTCA Direct Gain 0 0.970514001423146 0 0.805422425270081 prediction 0.941028002846293 Functional Gain - EEF1AKMT3 ENSG00000123427 CDS Human protein_coding chr12:58174306 chr12:58174306 synonymous SNV . 0 21 hm5C_associated_SNPs_130192 0 0 0 0 0 unknown 0 0.500231643944913 0.610844850540162 0.000463287889825414 hm5C_site_50250 DeepMRMD:0.610844850540162;iRNA_m5C:0.000463287889825414 50251 chr11 64032487 64032487 1 + C G LUAD 64032487 - 64032467 64032507 41 GTGGGCTGGGGGTGGGGTTTGAGGACGGCTGAGACCCCAGC GTGGGCTGGGGGTGGGGTTTCAGGACGGCTGAGACCCCAGC Direct Gain 0 0.970501748940966 0 0.946527183055878 prediction 0.941003497881932 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64032487 chr11:64032487 stopgain 0.001 0 21 hm5C_associated_SNPs_130193 0 0 0 0 0 Ribosome 0 0.500231643834172 0.893054366111756 0.000463287668344137 hm5C_site_50251 DeepMRMD:0.893054366111756;iRNA_m5C:0.000463287668344137 50252 chr17 7330437 7330437 1 + A G rs3892554 7330437 - 7330417 7330457 41 GCCGCACCTCACGGGGGTCCTGGGAGCTGTAGCCCAAGGGT GCCGCACCTCACGGGGGTCCCGGGAGCTGTAGCCCAAGGGT Direct Gain 0 0.97045543406727 0 0.957262575626373 prediction 0.940910868134541 Functional Gain - C17orf74 ENSG00000184560 CDS Human protein_coding chr17:7330437 chr17:7330437 nonsynonymous SNV 0.041 0 21 hm5C_associated_SNPs_130194 0 0 0 0 0 exosome 0 0.500231643909087 0.914525151252746 0.000463287818174063 hm5C_site_50252 DeepMRMD:0.914525151252746;iRNA_m5C:0.000463287818174063 50253 chr17 17700331 17700331 1 + C G BLCA 17700331 - 17700311 17700351 41 GTCGGAAAGGGATGGGCTCAGAGGATTACCAGGAGAGGCCC GTCGGAAAGGGATGGGCTCACAGGATTACCAGGAGAGGCCC Direct Gain 0 0.970428665819564 0 0.898156523704529 prediction 0.940857331639127 Functional Gain - RAI1 ENSG00000108557 CDS Human protein_coding chr17:17700331 chr17:17700331 nonsynonymous SNV 0.043 0 21 hm5C_associated_SNPs_130195 0 0 0 0 0 chromatin 0 0.500231643918275 0.796313047409058 0.000463287836549808 hm5C_site_50253 DeepMRMD:0.796313047409058;iRNA_m5C:0.000463287836549808 50254 chr6 155596901 155596901 1 + T C rs927718 155596901 + 155596881 155596921 41 GCTTTCATCCTGGCCTTATCTGGGGTCTCTGGAGTGCTCAC GCTTTCATCCTGGCCTTATCCGGGGTCTCTGGAGTGCTCAC Direct Gain 0 0.970400406476942 0 0.951575398445129 prediction 0.940800812953883 Functional Gain - CLDN20 ENSG00000171217 CDS Human protein_coding chr6:155596901 chr6:155596901 synonymous SNV . 0 21 hm5C_associated_SNPs_130196 0 0 0 0 0 nucleoplasm 0 0.500231643921252 0.903150796890258 0.000463287842503046 hm5C_site_50254 DeepMRMD:0.903150796890258;iRNA_m5C:0.000463287842503046 50255 chr1 28293330 28293330 1 + C G CESC 28293330 - 28293310 28293350 41 ACGTTGAACCAGGAGAAATAGAGGATGGTGGCCACCGTCAC ACGTTGAACCAGGAGAAATACAGGATGGTGGCCACCGTCAC Direct Gain 0 0.970386782488846 0 0.834252953529358 prediction 0.940773564977693 Functional Gain - XKR8 ENSG00000158156 CDS Human protein_coding chr1:28293330 chr1:28293330 synonymous SNV . 0 21 hm5C_associated_SNPs_130197 0 0 0 0 0 Endoplasmic reticulum 0 0.500232472493444 0.668505907058716 0.000464944986888982 hm5C_site_50255 DeepMRMD:0.668505907058716;iRNA_m5C:0.000464944986888982 50256 chr15 52013099 52013099 1 + T C rs146306169 52013099 + 52013079 52013119 41 GATAGGGCAAAAACGGAACATGGGAGGGGACAAATAAGGGA GATAGGGCAAAAACGGAACACGGGAGGGGACAAATAAGGGA Direct Gain 0 0.970366226803522 0 0.623785972595215 prediction 0.940732453607044 Functional Gain - SCG3 ENSG00000104112 UTR3 Human protein_coding chr15:52013099 chr15:52013099 . . 0 21 hm5C_associated_SNPs_130198 0 0 0 0 0 nucleolus 0 0.500231660636293 0.24757194519043 0.000463321272586192 hm5C_site_50256 DeepMRMD:0.24757194519043;iRNA_m5C:0.000463321272586192 50257 chr22 23626114 23626114 1 + C G rs551254115 23626114 - 23626094 23626134 41 GCCAGCCTGGGGTGATGGGTGGGGGGTGTTCGGCCCTCCCA GCCAGCCTGGGGTGATGGGTCGGGGGTGTTCGGCCCTCCCA Direct Gain 0 0.970363062766888 0 0.976506352424622 prediction 0.940726125533776 Functional Gain - BCR ENSG00000186716 intronic Human protein_coding chr22:23626114 chr22:23626114 . . 0 21 hm5C_associated_SNPs_130199 0 0 0 0 0 Ribosome 0 0.500231643921093 0.953012704849244 0.000463287842185744 hm5C_site_50257 DeepMRMD:0.953012704849244;iRNA_m5C:0.000463287842185744 50258 chr14 76967838 76967838 1 + C G rs73320346 76967838 - 76967818 76967858 41 AGAGGGAGGGCAGAGTCTATGGGGAAAGGAGGCCCCCCCCA AGAGGGAGGGCAGAGTCTATCGGGAAAGGAGGCCCCCCCCA Direct Gain 0 0.97030940947066 0 0.981778681278229 prediction 0.940618818941319 Functional Gain - ESRRB ENSG00000259124 ncRNA_intronic Human lincRNA chr14:76967838 chr14:76967838 . . 0 21 hm5C_associated_SNPs_130200 0 0 0 0 0 Nucleus 0 0.500231643921092 0.963557362556458 0.000463287842184856 hm5C_site_50258 DeepMRMD:0.963557362556458;iRNA_m5C:0.000463287842184856 50259 chr19 843410 843410 1 + C G rs541776339 843410 - 843390 843430 41 CCCCCAGGCTGCAGGGAAAGGGGGGATGGCAGAGCAGCCCC CCCCCAGGCTGCAGGGAAAGCGGGGATGGCAGAGCAGCCCC Direct Gain 0 0.97024156445069 0 0.86555802822113 prediction 0.94048312890138 Functional Gain - PRTN3 ENSG00000196415 UTR5 Human protein_coding chr19:843410 chr19:843410 . . 0 21 hm5C_associated_SNPs_130201 0 0 0 0 0 exosome 0 0.500231643921462 0.73111605644226 0.000463287842924265 hm5C_site_50259 DeepMRMD:0.73111605644226;iRNA_m5C:0.000463287842924265 50260 chr9 90501794 90501794 1 + A G UCEC 90501794 - 90501774 90501814 41 TTTCCTGTGGGTGTCAGACTTGGGAACAGCACATTTGGCCA TTTCCTGTGGGTGTCAGACTCGGGAACAGCACATTTGGCCA Direct Gain 0 0.97021213086647 0 0.951039671897888 prediction 0.940424261732941 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90501794 chr9:90501794 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130202 0 0 0 0 0 exosome 0 0.500231645875226 0.902079343795776 0.000463291750451678 hm5C_site_50260 DeepMRMD:0.902079343795776;iRNA_m5C:0.000463291750451678 50261 chr17 29326057 29326057 1 + G C LUSC 29326057 + 29326037 29326077 41 TGGGCATCTGGCTGAACCTTGAGGAGGGAAAGCTTGCCTTC TGGGCATCTGGCTGAACCTTCAGGAGGGAAAGCTTGCCTTC Direct Gain 0 0.970165144114417 0 0.888949751853943 prediction 0.940330288228834 Functional Gain - RNF135 ENSG00000181481 CDS Human protein_coding chr17:29326057 chr17:29326057 nonsynonymous SNV 0.796 3 21 hm5C_associated_SNPs_130203 0 0 0 0 0 Ribosome 0 0.500231643921083 0.777899503707886 0.000463287842166427 hm5C_site_50261 DeepMRMD:0.777899503707886;iRNA_m5C:0.000463287842166427 50262 chr1 178062942 178062942 1 + A G rs577554936 178062942 - 178062922 178062962 41 CACGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGCGG CACGGCGGTGGCGGTGGCGGCGGCGGTGGCGGTGGCGGCGG Direct Gain 0 0.970152468785144 0 0.960816621780396 prediction 0.940304937570289 Functional Gain - RASAL2-AS1 ENSG00000224687 ncRNA_exonic Human lincRNA chr1:178062942 chr1:178062942 . . 0 21 hm5C_associated_SNPs_130204 0 0 0 0 0 unknown 0 0.500231643916366 0.921633243560792 0.000463287832731085 hm5C_site_50262 DeepMRMD:0.921633243560792;iRNA_m5C:0.000463287832731085 50263 chr14 104095527 104095527 1 + G C rs552328539 104095527 + 104095507 104095547 41 GGGGCGAGGCGGGGCGCCGGGGGGAGCAACACTGAGACGCC GGGGCGAGGCGGGGCGCCGGCGGGAGCAACACTGAGACGCC Direct Gain 0 0.970093518896879 0 0.966389000415802 prediction 0.940187037793758 Functional Gain - KLC1 ENSG00000126214 UTR5 Human protein_coding chr14:104095527 chr14:104095527 . . 0 21 hm5C_associated_SNPs_130205 0 0 0 0 0 Cytosol 0 0.500231643921092 0.932778000831604 0.000463287842184856 hm5C_site_50263 DeepMRMD:0.932778000831604;iRNA_m5C:0.000463287842184856 50264 chr11 562244 562244 1 + C G LUSC 562244 - 562224 562264 41 CCGGGGGTGGACAGCTGTCTGAGGAGGGCCTCCCAGCTAGG CCGGGGGTGGACAGCTGTCTCAGGAGGGCCTCCCAGCTAGG Direct Gain 0 0.970074083191697 0 0.960486888885498 prediction 0.940148166383395 Functional Gain - RASSF7 ENSG00000099849 CDS Human protein_coding chr11:562244 chr11:562244 stopgain 0.682 0 21 hm5C_associated_SNPs_130206 0 0 0 0 0 exosome 0 0.500231643921092 0.920973777770996 0.000463287842184856 hm5C_site_50264 DeepMRMD:0.920973777770996;iRNA_m5C:0.000463287842184856 50265 chrX 147026500 147026500 1 + G C LUSC 147026500 + 147026480 147026520 41 GAGGGAGAGCTTCCTGCGCAGAGGAGACGGACGGCGGCGTG GAGGGAGAGCTTCCTGCGCACAGGAGACGGACGGCGGCGTG Direct Gain 0 0.970073209658502 0 0.837321996688843 prediction 0.940146419317004 Functional Gain - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147026500 chrX:147026500 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130207 0 0 1 0 2 Cytosol 0 0.500231644163454 0.674643993377686 0.000463288326908229 hm5C_site_50265 DeepMRMD:0.674643993377686;iRNA_m5C:0.000463288326908229 50266 chr19 45476396 45476396 1 + C G BLCA 45476396 - 45476376 45476416 41 TCCGGGGCCCGCCTGGTCCTGAGGGGCCGGCCCTCGGCGGA TCCGGGGCCCGCCTGGTCCTCAGGGGCCGGCCCTCGGCGGA Direct Gain 0 0.97003400451346 0 0.977392613887787 prediction 0.94006800902692 Functional Gain - CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45476396 chr19:45476396 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_130208 0 0 0 0 0 Cytosol 0 0.500231644096689 0.954785227775574 0.000463288193377487 hm5C_site_50266 DeepMRMD:0.954785227775574;iRNA_m5C:0.000463288193377487 50267 chr6 7727519 7727519 1 + G C STAD 7727519 + 7727499 7727539 41 CCCCGGCGCTCCGGCAGCAGGAGGAGCAGCAGCAGCAGCAG CCCCGGCGCTCCGGCAGCAGCAGGAGCAGCAGCAGCAGCAG Direct Gain 0 0.970009453251104 0 0.795505166053772 prediction 0.940018906502208 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7727519 chr6:7727519 nonsynonymous SNV 0.958 0 21 hm5C_associated_SNPs_130209 0 0 0 0 0 Ribosome 0 0.500231643921092 0.591010332107544 0.000463287842184856 hm5C_site_50267 DeepMRMD:0.591010332107544;iRNA_m5C:0.000463287842184856 50268 chr16 1270951 1270951 1 + C G CESC 1270951 - 1270931 1270971 41 CCCCTGGGGCAGGGGTGGCTGAGGGGGACCCTGGTTTCTCC CCCCTGGGGCAGGGGTGGCTCAGGGGGACCCTGGTTTCTCC Direct Gain 0 0.969995531774943 0 0.955681800842285 prediction 0.939991063549887 Functional Gain - CACNA1H ENSG00000196557 CDS Human protein_coding chr16:1270951 chr16:1270951 stopgain 0.123 0 21 hm5C_associated_SNPs_130210 0 0 0 0 0 nucleolus 0 0.500231643921092 0.91136360168457 0.000463287842184856 hm5C_site_50268 DeepMRMD:0.91136360168457;iRNA_m5C:0.000463287842184856 50269 chr11 59860886 59860886 1 + T C BLCA 59860886 + 59860866 59860906 41 TTATCAGGTGAGAGGAAGCCTGGGAGCAAACACTGCCAGCA TTATCAGGTGAGAGGAAGCCCGGGAGCAAACACTGCCAGCA Direct Gain 0 0.969933674591862 0 0.85541296005249 prediction 0.939867349183724 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59860886 chr11:59860886 nonsynonymous SNV 0.986 4 21 hm5C_associated_SNPs_130211 0 0 0 0 1 exosome 0 0.500231643921092 0.71082592010498 0.000463287842184856 hm5C_site_50269 DeepMRMD:0.71082592010498;iRNA_m5C:0.000463287842184856 50270 chr10 103825336 103825336 1 + T C rs573488604 103825336 + 103825316 103825356 41 GACTCAGCGGTCCGAGTCCGTGGCAGTCCGGACGGCCGCCA GACTCAGCGGTCCGAGTCCGCGGCAGTCCGGACGGCCGCCA Direct Gain 0 0.969933001350523 0 0.869533538818359 prediction 0.939866002701046 Functional Gain - HPS6 ENSG00000166189 CDS Human protein_coding chr10:103825336 chr10:103825336 synonymous SNV . 0 21 hm5C_associated_SNPs_130212 2 0 0 0 0 Ribosome 0 0.5002316432654 0.739067077636718 0.0004632865308003 hm5C_site_50270 DeepMRMD:0.739067077636718;iRNA_m5C:0.0004632865308003 not specified not specified 50271 chr6 17539623 17539623 1 + G C HNSC 17539623 + 17539603 17539643 41 TCGAGAATGAAGGCAAAAAAGAGGAATCTTCTCCTTCACGC TCGAGAATGAAGGCAAAAAACAGGAATCTTCTCCTTCACGC Direct Gain 0 0.969874915964676 0 0.865282416343689 prediction 0.939749831929352 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17539623 chr6:17539623 nonsynonymous SNV 0.850 0 21 hm5C_associated_SNPs_130213 0 0 0 0 1 exosome 0 0.500231643921354 0.730564832687378 0.000463287842708882 hm5C_site_50271 DeepMRMD:0.730564832687378;iRNA_m5C:0.000463287842708882 50272 chr14 32030722 32030722 1 + G C rs77539990 32030722 + 32030702 32030742 41 CGGGGCCACTGCCCCGCTTGGGGGAAGCCGAGCGATGGTTT CGGGGCCACTGCCCCGCTTGCGGGAAGCCGAGCGATGGTTT Direct Gain 0 0.969868946966008 0 0.943747043609619 prediction 0.939737893932016 Functional Gain - NUBPL ENSG00000151413 CDS Human protein_coding chr14:32030722 chr14:32030722 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_130214 0 0 1 0 1 chromatin 0 0.500231755500876 0.887494087219238 0.000463511001752348 hm5C_site_50272 DeepMRMD:0.887494087219238;iRNA_m5C:0.000463511001752348 50273 chr11 67784953 67784953 1 + A G rs554969477 67784953 - 67784933 67784973 41 TGAGGCAGCGCCTGAGGTTATGGGGTGCAGGCTCTCCCGGG TGAGGCAGCGCCTGAGGTTACGGGGTGCAGGCTCTCCCGGG Direct Gain 0 0.969824503873094 0 0.926227033138275 prediction 0.939649007746189 Functional Gain - ALDH3B1 ENSG00000006534 intronic Human protein_coding chr11:67784953 chr11:67784953 . . 0 21 hm5C_associated_SNPs_130215 0 0 0 0 0 Ribosome 0 0.500231643921092 0.85245406627655 0.000463287842184856 hm5C_site_50273 DeepMRMD:0.85245406627655;iRNA_m5C:0.000463287842184856 50274 chr3 52360816 52360816 1 + A G rs376828415 52360816 - 52360796 52360836 41 GGTGCCTGGGCATGAGCTTGTTGGAGTCGATGCCCTGGCTG GGTGCCTGGGCATGAGCTTGCTGGAGTCGATGCCCTGGCTG Direct Gain 0 0.969824263249336 0 0.829165458679199 prediction 0.939648526498672 Functional Gain - DNAH1 ENSG00000114841 CDS Human protein_coding chr3:52360816 chr3:52360816 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_130216 0 0 0 0 0 chromatin 0 0.500231643798426 0.658330917358398 0.000463287596851769 hm5C_site_50274 DeepMRMD:0.658330917358398;iRNA_m5C:0.000463287596851769 50275 chr1 158325845 158325845 1 + G C CESC 158325845 + 158325825 158325865 41 GGAGGCAGCTGGCCTGTCCTGTCGGGTGAAACACAGCAGTC GGAGGCAGCTGGCCTGTCCTCTCGGGTGAAACACAGCAGTC Direct Gain 0 0.969787836677941 0 0.816658496856689 prediction 0.939575673355883 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325845 chr1:158325845 nonsynonymous SNV 0.505 4 21 hm5C_associated_SNPs_130217 0 0 0 0 1 exosome 0 0.500231643921092 0.633316993713378 0.000463287842184856 hm5C_site_50275 DeepMRMD:0.633316993713378;iRNA_m5C:0.000463287842184856 50276 chr11 45907400 45907400 1 + G C READ 45907400 + 45907380 45907420 41 GCGAGAAAGCGGCGGCCTGGGAGGGGGGGCCGCGTCCCCGC GCGAGAAAGCGGCGGCCTGGCAGGGGGGGCCGCGTCCCCGC Direct Gain 0 0.96974821193267 0 0.931573629379272 prediction 0.93949642386534 Functional Gain - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45907400 chr11:45907400 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_130218 0 0 0 0 1 Endoplasmic reticulum 0 0.500231643921126 0.863147258758544 0.000463287842251692 hm5C_site_50276 DeepMRMD:0.863147258758544;iRNA_m5C:0.000463287842251692 50277 chr3 141457118 141457118 1 + C G rs528733134 141457118 - 141457098 141457138 41 CGGAAGGCTAGGGCGGCTCTGTGGAGCCGCCCGACGGGCCA CGGAAGGCTAGGGCGGCTCTCTGGAGCCGCCCGACGGGCCA Direct Gain 0 0.969743194574959 0 0.928877830505371 prediction 0.939486389149917 Functional Gain - RNF7 ENSG00000114125 UTR5 Human protein_coding chr3:141457118 chr3:141457118 . . 0 21 hm5C_associated_SNPs_130219 0 0 0 0 0 Ribosome 0 0.500231643921122 0.857755661010742 0.000463287842244142 hm5C_site_50277 DeepMRMD:0.857755661010742;iRNA_m5C:0.000463287842244142 50278 chr1 201182202 201182202 1 + A G UCEC 201182202 - 201182182 201182222 41 GGTCCGGACTCCCCAGGTTTTGGGGTGAGGGCATTCCCCCA GGTCCGGACTCCCCAGGTTTCGGGGTGAGGGCATTCCCCCA Direct Gain 0 0.969741216121741 0 0.984824061393738 prediction 0.939482432243482 Functional Gain - IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201182202 chr1:201182202 synonymous SNV . 0 21 hm5C_associated_SNPs_130220 0 0 0 0 0 exosome 0 0.500231643921087 0.969648122787476 0.000463287842173532 hm5C_site_50278 DeepMRMD:0.969648122787476;iRNA_m5C:0.000463287842173532 50279 chr20 61870849 61870849 1 + C G LUAD 61870849 - 61870829 61870869 41 AGGTGGCCGCACGGCACAAAGACGATGGACACGGCGCGGTC AGGTGGCCGCACGGCACAAACACGATGGACACGGCGCGGTC Direct Gain 0 0.969714721203805 0 0.852715611457825 prediction 0.93942944240761 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61870849 chr20:61870849 synonymous SNV . 0 21 hm5C_associated_SNPs_130221 0 0 0 0 0 exosome 0 0.500231643921029 0.70543122291565 0.000463287842058735 hm5C_site_50279 DeepMRMD:0.70543122291565;iRNA_m5C:0.000463287842058735 50280 chr1 160388962 160388962 1 + C G BLCA 160388962 - 160388942 160388982 41 AGCAGGAAGGCCAGAGGCGTGAGGAAAGACAGCAGTGCCAG AGCAGGAAGGCCAGAGGCGTCAGGAAAGACAGCAGTGCCAG Direct Gain 0 0.969714663422204 0 0.887213230133057 prediction 0.939429326844409 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160388962 chr1:160388962 synonymous SNV . 0 21 hm5C_associated_SNPs_130222 0 0 0 0 0 exosome 0 0.500231643921088 0.774426460266114 0.000463287842175975 hm5C_site_50280 DeepMRMD:0.774426460266114;iRNA_m5C:0.000463287842175975 50281 chr1 152770446 152770446 1 + A G rs7527180 152770446 - 152770426 152770466 41 AGCTGCAGCAGCCCCCAGAGTTGGAGCCACAGCCGCCCCCA AGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCCGCCCCCA Direct Gain 0 0.969677790263293 0 0.947501957416534 prediction 0.939355580526586 Functional Gain - LCE1D ENSG00000172155 CDS Human protein_coding chr1:152770446 chr1:152770446 nonsynonymous SNV 0.357 0 21 hm5C_associated_SNPs_130223 0 0 0 0 0 unknown 0 0.500231643921092 0.895003914833068 0.000463287842183968 hm5C_site_50281 DeepMRMD:0.895003914833068;iRNA_m5C:0.000463287842183968 50282 chr1 174969271 174969271 1 + C G rs1046439 174969271 - 174969251 174969291 41 GAGCTGCAGCCGCGCAGAAGGAGGAACAGGAAACCCCGCGC GAGCTGCAGCCGCGCAGAAGCAGGAACAGGAAACCCCGCGC Direct Gain 0 0.969667967649121 0 0.883054375648499 prediction 0.939335935298242 Functional Gain - CACYBP ENSG00000116161 UTR5 Human protein_coding chr1:174969271 chr1:174969271 . . 0 21 hm5C_associated_SNPs_130224 0 0 0 0 0 Cytosol 0 0.500231643921092 0.766108751296998 0.000463287842184856 hm5C_site_50282 DeepMRMD:0.766108751296998;iRNA_m5C:0.000463287842184856 50283 chr21 31802759 31802759 1 + T C rs149298552 31802759 + 31802739 31802779 41 GGGACTGTCAGAAGACCTGCTGGGAGCCCGCCAGCTGCCAG GGGACTGTCAGAAGACCTGCCGGGAGCCCGCCAGCTGCCAG Direct Gain 0 0.969626684974241 0 0.965216159820557 prediction 0.939253369948483 Functional Gain - KRTAP13-4 ENSG00000186971 CDS Human protein_coding chr21:31802759 chr21:31802759 nonsynonymous SNV 0.011 0 21 hm5C_associated_SNPs_130225 0 0 0 0 0 unknown 0 0.500477369101003 0.930432319641114 0.000954738202005867 hm5C_site_50283 DeepMRMD:0.930432319641114;iRNA_m5C:0.000954738202005867 50284 chr5 68665291 68665291 1 + G C SKCM 68665291 + 68665271 68665311 41 CCCGGCCGCGCGCCCTGACCGGTGAGCAGGATGTTCGGAAG CCCGGCCGCGCGCCCTGACCCGTGAGCAGGATGTTCGGAAG Direct Gain 0 0.969604308689093 0 0.745857238769531 prediction 0.939208617378186 Functional Gain - AK6 ENSG00000085231 CDS Human protein_coding chr5:68665291 chr5:68665291 synonymous SNV . 0 21 hm5C_associated_SNPs_130226 0 0 0 0 1 nucleolus 0 0.500231643921092 0.491714477539062 0.000463287842184856 hm5C_site_50284 DeepMRMD:0.491714477539062;iRNA_m5C:0.000463287842184856 50285 chrX 41588789 41588789 1 + T C rs200474255 41588789 + 41588769 41588809 41 CGAGACTAGCCTGGCCAACATGGCGAAACCCACCTCTACTA CGAGACTAGCCTGGCCAACACGGCGAAACCCACCTCTACTA Direct Gain 0 0.969592893998046 0 0.86435067653656 prediction 0.939185787996091 Functional Gain - GPR82 ENSG00000171657 UTR3 Human protein_coding chrX:41588789 chrX:41588789 . . 0 21 hm5C_associated_SNPs_130227 0 0 0 0 0 nucleus 0 0.500231643920945 0.72870135307312 0.000463287841889537 hm5C_site_50285 DeepMRMD:0.72870135307312;iRNA_m5C:0.000463287841889537 50286 chr6 122720937 122720937 1 + G C BLCA 122720937 + 122720917 122720957 41 GCAAGCTGTGGACGCTTGTGGAGGAAACCCACACTAACGAG GCAAGCTGTGGACGCTTGTGCAGGAAACCCACACTAACGAG Direct Gain 0 0.969592646258449 0 0.825771808624268 prediction 0.939185292516897 Functional Gain - HSF2 ENSG00000025156 CDS Human protein_coding chr6:122720937 chr6:122720937 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_130228 0 0 1 0 1 Cytosol 0 0.500231643938222 0.651543617248536 0.00046328787644434 hm5C_site_50286 DeepMRMD:0.651543617248536;iRNA_m5C:0.00046328787644434 50287 chr19 7585558 7585558 1 + A G UCEC 7585558 - 7585538 7585578 41 ATCTGGAGCCGGGGAGGGGTTTGGAGCTGGGATCCGGCAGA ATCTGGAGCCGGGGAGGGGTCTGGAGCTGGGATCCGGCAGA Direct Gain 0 0.969524642493218 0 0.929462313652039 prediction 0.939049284986436 Functional Gain - ZNF358 ENSG00000198816 CDS Human protein_coding chr19:7585558 chr19:7585558 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130229 0 0 0 0 0 Cytosol 0 0.500231643921092 0.858924627304078 0.000463287842184856 hm5C_site_50287 DeepMRMD:0.858924627304078;iRNA_m5C:0.000463287842184856 50288 chr11 67376948 67376948 1 + G C HNSC 67376948 + 67376928 67376968 41 AGTATCTGGTGGTGAACGCAGACGAGGGGGAGCCGGGCACC AGTATCTGGTGGTGAACGCACACGAGGGGGAGCCGGGCACC Direct Gain 0 0.969521807341792 0 0.724207282066345 prediction 0.939043614683583 Functional Gain - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67376948 chr11:67376948 nonsynonymous SNV 0.935 5 21 hm5C_associated_SNPs_130230 0 0 1 0 1 Ribosome 0 0.500231643921092 0.44841456413269 0.000463287842184856 hm5C_site_50288 DeepMRMD:0.44841456413269;iRNA_m5C:0.000463287842184856 50289 chr16 55794533 55794533 1 + C G BLCA 55794533 - 55794513 55794553 41 CCTGGAAGGGCGACAGTTCCGGGGGCCTGCGAGGTCTCCGT CCTGGAAGGGCGACAGTTCCCGGGGCCTGCGAGGTCTCCGT Direct Gain 0 0.969442660509781 0 0.969989955425262 prediction 0.938885321019562 Functional Gain - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55794533 chr16:55794533 . . 0 21 hm5C_associated_SNPs_130231 0 0 0 0 0 unknown 0 0.500231643921092 0.939979910850524 0.00046328784218419 hm5C_site_50289 DeepMRMD:0.939979910850524;iRNA_m5C:0.00046328784218419 50290 chrX 152845595 152845595 1 + G C CESC 152845595 + 152845575 152845615 41 ACACGGACGTGGACGAGAACGAGGAGCGCCTCCGGGCCCCC ACACGGACGTGGACGAGAACCAGGAGCGCCTCCGGGCCCCC Direct Gain 0 0.969442638515324 0 0.932658612728119 prediction 0.938885277030648 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152845595 chrX:152845595 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130232 0 0 0 0 0 exosome 0 0.500231643921124 0.865317225456238 0.000463287842248805 hm5C_site_50290 DeepMRMD:0.865317225456238;iRNA_m5C:0.000463287842248805 50291 chr8 86360424 86360424 1 + T C rs140412345 86360424 + 86360404 86360444 41 TCAGGAAAGGAAACCTACCATTGGAGAGCTTGGTTCCTTGC TCAGGAAAGGAAACCTACCACTGGAGAGCTTGGTTCCTTGC Direct Gain 0 0.969399580318497 0 0.839573502540588 prediction 0.938799160636993 Functional Gain - CA3-AS1 ENSG00000253549 ncRNA_intronic Human antisense chr8:86360424 chr8:86360424 . . 0 21 hm5C_associated_SNPs_130233 0 0 0 0 0 unknown 0 0.50023164304405 0.679147005081176 0.000463286088099313 hm5C_site_50291 DeepMRMD:0.679147005081176;iRNA_m5C:0.000463286088099313 50292 chr11 764854 764854 1 + T C rs7939103 764854 + 764834 764874 41 AATGGAAAGTAGCGCATCCCTGAGGCTGGACTCCAGATCTG AATGGAAAGTAGCGCATCCCCGAGGCTGGACTCCAGATCTG Direct Gain 0 0.969396615470314 0 0.80142730474472 prediction 0.938793230940628 Functional Gain - TALDO1 ENSG00000177156 UTR3 Human protein_coding chr11:764854 chr11:764854 . . 0 21 hm5C_associated_SNPs_130234 1 0 1 0 1 Ribosome 0 0.500231643921093 0.60285460948944 0.000463287842185078 hm5C_site_50292 DeepMRMD:0.60285460948944;iRNA_m5C:0.000463287842185078 Deficiency of transaldolase Deficiency of transaldolase 50293 chr1 146649676 146649676 1 + C G LGG 146649676 - 146649656 146649696 41 ACATGGCGGCGAGGTGGGGTGGGGGCAGCCGGAAGGGTCGC ACATGGCGGCGAGGTGGGGTCGGGGCAGCCGGAAGGGTCGC Direct Gain 0 0.969392359397578 0 0.923130393028259 prediction 0.938784718795156 Functional Gain - PDIA3P1 ENSG00000237188;ENSG00000273071 ncRNA_intronic Human other chr1:146649676 chr1:146649676 . . 0 21 hm5C_associated_SNPs_130235 0 0 0 0 0 unknown 0 0.500231633261441 0.846260786056518 0.000463266522881423 hm5C_site_50293 DeepMRMD:0.846260786056518;iRNA_m5C:0.000463266522881423 50294 chr11 117280522 117280522 1 + A G UCEC 117280522 - 117280502 117280542 41 GGCCAGGGAGCCATAGTAGGTGGGGGTGGGGGTGCTCTTAG GGCCAGGGAGCCATAGTAGGCGGGGGTGGGGGTGCTCTTAG Direct Gain 0 0.969309898570122 0 0.976293504238129 prediction 0.938619797140245 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117280522 chr11:117280522 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_130236 0 0 0 0 0 Cytosol 0 0.500231643921092 0.952587008476258 0.000463287842184856 hm5C_site_50294 DeepMRMD:0.952587008476258;iRNA_m5C:0.000463287842184856 50295 chr4 54244323 54244323 1 + G C rs1383982 54244323 + 54244303 54244343 41 TGTGGCGGCCGGGCCGGGCTGGGGGGCTGTGACCGGTCCTG TGTGGCGGCCGGGCCGGGCTCGGGGGCTGTGACCGGTCCTG Direct Gain 0 0.969289385273856 0 0.975241780281067 prediction 0.938578770547712 Functional Gain - FIP1L1 ENSG00000145216 intronic Human protein_coding chr4:54244323 chr4:54244323 . . 0 21 hm5C_associated_SNPs_130237 0 0 0 0 0 Nucleus 0 0.500231643921039 0.950483560562134 0.000463287842078941 hm5C_site_50295 DeepMRMD:0.950483560562134;iRNA_m5C:0.000463287842078941 50296 chr5 33453497 33453497 1 + G C LUAD 33453497 + 33453477 33453517 41 CCTTGGAGCTTCTCAAGTTTGAGGATGAGGAAGCTCAGGCA CCTTGGAGCTTCTCAAGTTTCAGGATGAGGAAGCTCAGGCA Direct Gain 0 0.969258087476541 0 0.926743507385254 prediction 0.938516174953083 Functional Gain - TARS ENSG00000113407 CDS Human protein_coding chr5:33453497 chr5:33453497 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130238 0 0 1 0 1 Nucleus 0 0.500231643921089 0.853487014770508 0.000463287842177529 hm5C_site_50296 DeepMRMD:0.853487014770508;iRNA_m5C:0.000463287842177529 50297 chr20 42839602 42839602 1 + C G rs188265031 42839602 - 42839582 42839622 41 CGTAAGGCGCACGTGCTTCTGAGGGGGGCGGGTGCGGGGCG CGTAAGGCGCACGTGCTTCTCAGGGGGGCGGGTGCGGGGCG Direct Gain 0 0.969250991904749 0 0.964677691459656 prediction 0.938501983809497 Functional Gain - OSER1-AS1 ENSG00000223891 ncRNA_exonic Human lincRNA chr20:42839602 chr20:42839602 . . 0 21 hm5C_associated_SNPs_130239 0 0 0 0 0 unknown 0 0.500231643921093 0.929355382919312 0.000463287842185078 hm5C_site_50297 DeepMRMD:0.929355382919312;iRNA_m5C:0.000463287842185078 50298 chr1 110882503 110882503 1 + C G BLCA 110882503 - 110882483 110882523 41 CGTCCCCGCCGCCGGGAGCTGAGGAGGCGGCCCCAGAGGAA CGTCCCCGCCGCCGGGAGCTCAGGAGGCGGCCCCAGAGGAA Direct Gain 0 0.969201068014731 0 0.907636284828186 prediction 0.938402136029463 Functional Gain - RBM15 ENSG00000162775 CDS Human protein_coding chr1:110882503 chr1:110882503 stopgain 0.998 0 21 hm5C_associated_SNPs_130240 0 0 0 0 0 Nucleus 0 0.500231643921112 0.815272569656372 0.000463287842223048 hm5C_site_50298 DeepMRMD:0.815272569656372;iRNA_m5C:0.000463287842223048 50299 chr5 3600220 3600220 1 + C G BLCA 3600220 - 3600200 3600240 41 CCCAGGAAGGAGCGCATGTTGAGCAGGGAGCCCTGTGCGAG CCCAGGAAGGAGCGCATGTTCAGCAGGGAGCCCTGTGCGAG Direct Gain 0 0.969114569675662 0 0.407908916473389 prediction 0.938229139351323 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600220 chr5:3600220 synonymous SNV . 0 21 hm5C_associated_SNPs_130241 0 0 0 0 0 exosome 0 0.500231643921094 0 0.000463287842188631 hm5C_site_50299 DeepMRMD:0;iRNA_m5C:0.000463287842188631 50300 chr19 11660779 11660779 1 + T C rs35986026 11660779 + 11660759 11660799 41 GCAGACTGGCGGGGGGCCCATTGGGGGGAAGGGGACCCTCC GCAGACTGGCGGGGGGCCCACTGGGGGGAAGGGGACCCTCC Direct Gain 0 0.968994581643073 0 0.880573630332947 prediction 0.937989163286146 Functional Gain - CNN1 ENSG00000130176 UTR3 Human protein_coding chr19:11660779 chr19:11660779 . . 0 21 hm5C_associated_SNPs_130242 0 0 0 0 0 Cytosol 0 0.500230231937442 0.761147260665894 0.000460463874884853 hm5C_site_50300 DeepMRMD:0.761147260665894;iRNA_m5C:0.000460463874884853 50301 chr4 8621216 8621216 1 + G C TGCT 8621216 + 8621196 8621236 41 TGGGAGGTGCCAGCTCTTTGGGGGAGGCCACGGAGCCCGAC TGGGAGGTGCCAGCTCTTTGCGGGAGGCCACGGAGCCCGAC Direct Gain 0 0.968967013430882 0 0.968149840831757 prediction 0.937934026861764 Functional Gain - CPZ ENSG00000109625 CDS Human protein_coding chr4:8621216 chr4:8621216 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_130243 0 0 1 0 0 Endoplasmic reticulum 0 0.50023164386462 0.936299681663514 0.000463287729239203 hm5C_site_50301 DeepMRMD:0.936299681663514;iRNA_m5C:0.000463287729239203 50302 chr20 5296488 5296488 1 + G C rs910971 5296488 + 5296468 5296508 41 CTCAGCGTGGGACCAAGAATGGGGAGTCCTACCCCTCCTCG CTCAGCGTGGGACCAAGAATCGGGAGTCCTACCCCTCCTCG Direct Gain 0 0.968924952829059 0 0.981296479701996 prediction 0.937849905658117 Functional Gain - PROKR2 ENSG00000101292 intronic Human protein_coding chr20:5296488 chr20:5296488 . . 0 21 hm5C_associated_SNPs_130244 0 0 0 0 0 exosome 0 0.500231643921093 0.962592959403992 0.000463287842185522 hm5C_site_50302 DeepMRMD:0.962592959403992;iRNA_m5C:0.000463287842185522 50303 chr1 167095901 167095901 1 + A C KIRC 167095901 + 167095881 167095921 41 GCAGACAGGAGCTCAGAAGCAGGGAGCAGGGTGCGGGAGGA GCAGACAGGAGCTCAGAAGCCGGGAGCAGGGTGCGGGAGGA Direct Gain 0 0.968913415230443 0 0.921176731586456 prediction 0.937826830460886 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167095901 chr1:167095901 synonymous SNV . 0 21 hm5C_associated_SNPs_130245 0 0 0 0 0 Endoplasmic reticulum 0 0.500231586207571 0.842353463172912 0.000463172415142488 hm5C_site_50303 DeepMRMD:0.842353463172912;iRNA_m5C:0.000463172415142488 50304 chr16 20911785 20911785 1 + G C rs150589892 20911785 + 20911765 20911805 41 CAGCTCCAGGAGGGAGAATGGGAGAGGGGCAAGGAGGGAAC CAGCTCCAGGAGGGAGAATGCGAGAGGGGCAAGGAGGGAAC Direct Gain 0 0.968895810372894 0 0.856296360492706 prediction 0.937791620745787 Functional Gain - LYRM1 ENSG00000102897 UTR5 Human protein_coding chr16:20911785 chr16:20911785 . . 0 21 hm5C_associated_SNPs_130246 0 0 1 0 1 Ribosome 0 0.500231643921093 0.712592720985412 0.000463287842185078 hm5C_site_50304 DeepMRMD:0.712592720985412;iRNA_m5C:0.000463287842185078 50305 chr7 120969709 120969709 1 + A C COAD 120969709 + 120969689 120969729 41 GCCAGAAGGAGCTGTGCAAGAGGAAACCGTACCTGCTGCCG GCCAGAAGGAGCTGTGCAAGCGGAAACCGTACCTGCTGCCG Direct Gain 0 0.968892112570665 0 0.935904860496521 prediction 0.93778422514133 Functional Gain - WNT16 ENSG00000002745 CDS Human protein_coding chr7:120969709 chr7:120969709 synonymous SNV . 0 21 hm5C_associated_SNPs_130247 0 0 0 0 0 exosome 0 0.500231643939026 0.871809720993042 0.000463287878051943 hm5C_site_50305 DeepMRMD:0.871809720993042;iRNA_m5C:0.000463287878051943 50306 chr22 21044345 21044345 1 + T C rs372189549 21044345 + 21044325 21044365 41 TCTCTGTGGGGCCCAGGAGCTGGGAGTCACCCCTTTGGGGT TCTCTGTGGGGCCCAGGAGCCGGGAGTCACCCCTTTGGGGT Direct Gain 0 0.968788342152203 0 0.921531438827515 prediction 0.937576684304406 Functional Gain - POM121L4P ENSG00000217261 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:21044345 chr22:21044345 . . 0 21 hm5C_associated_SNPs_130248 0 0 0 0 0 unknown 0 0.500231643921067 0.84306287765503 0.000463287842134008 hm5C_site_50306 DeepMRMD:0.84306287765503;iRNA_m5C:0.000463287842134008 50307 chr5 179201504 179201504 1 + A G STAD 179201504 - 179201484 179201524 41 CACGGCAGCTGCTGAGCTCATGGGAGCCATGGGCCTGTTGG CACGGCAGCTGCTGAGCTCACGGGAGCCATGGGCCTGTTGG Direct Gain 0 0.968776536454963 0 0.907985329627991 prediction 0.937553072909926 Functional Gain - MAML1 ENSG00000161021 CDS Human protein_coding chr5:179201504 chr5:179201504 nonsynonymous SNV 0.450 0 21 hm5C_associated_SNPs_130249 0 0 0 0 0 Ribosome 0 0.500231643921088 0.815970659255982 0.00046328784217553 hm5C_site_50307 DeepMRMD:0.815970659255982;iRNA_m5C:0.00046328784217553 50308 chr19 50154274 50154274 1 + C G SKCM 50154274 - 50154254 50154294 41 TGCAGGGGGCGGTGGGGGTGGGGGAGGGGAAGGGGAGGAAG TGCAGGGGGCGGTGGGGGTGCGGGAGGGGAAGGGGAGGAAG Direct Gain 0 0.968743873910961 0 0.916305422782898 prediction 0.937487747821922 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50154274 chr19:50154274 nonsynonymous SNV 0.203 2 21 hm5C_associated_SNPs_130250 0 0 0 0 0 Cytosol 0 0.500231643921092 0.832610845565796 0.000463287842184856 hm5C_site_50308 DeepMRMD:0.832610845565796;iRNA_m5C:0.000463287842184856 50309 chr11 5841699 5841699 1 + G C LGG 5841699 + 5841679 5841719 41 CATTGCTGTCGTGGGGAACTGTGGGCTCATCTGCCTCATCA CATTGCTGTCGTGGGGAACTCTGGGCTCATCTGCCTCATCA Direct Gain 0 0.968723850314511 0 0.815815329551697 prediction 0.937447700629021 Functional Gain - OR52N2 ENSG00000180988 CDS Human protein_coding chr11:5841699 chr11:5841699 nonsynonymous SNV 0.205 0 21 hm5C_associated_SNPs_130251 0 0 0 0 0 unknown 0 0.500231643828707 0.631630659103394 0.000463287657413325 hm5C_site_50309 DeepMRMD:0.631630659103394;iRNA_m5C:0.000463287657413325 50310 chr5 140531448 140531448 1 + C G STAD 140531448 - 140531428 140531468 41 GCGCCTCGCTGCTCAACGCCGGGGAGCCGCGGTCTGTGGCG GCGCCTCGCTGCTCAACGCCCGGGAGCCGCGGTCTGTGGCG Direct Gain 0 0.968704400371989 0 0.937014102935791 prediction 0.937408800743979 Functional Gain - PCDHB6 ENSG00000113211 CDS Human protein_coding chr5:140531448 chr5:140531448 nonsynonymous SNV 0.006 3 21 hm5C_associated_SNPs_130252 0 0 0 0 0 exosome 0 0.500231643865459 0.874028205871582 0.000463287730918083 hm5C_site_50310 DeepMRMD:0.874028205871582;iRNA_m5C:0.000463287730918083 50311 chr12 5154962 5154962 1 + G C CESC 5154962 + 5154942 5154982 41 CCAGGGGCCGGGGCTGGACAGAGGAGTCCAGCGGAAGGTCA CCAGGGGCCGGGGCTGGACACAGGAGTCCAGCGGAAGGTCA Direct Gain 0 0.968693690137475 0 0.829803466796875 prediction 0.937387380274951 Functional Gain - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5154962 chr12:5154962 nonsynonymous SNV 0.884 1 21 hm5C_associated_SNPs_130253 0 0 0 0 0 exosome 0 0.500231643923624 0.65960693359375 0.000463287847248139 hm5C_site_50311 DeepMRMD:0.65960693359375;iRNA_m5C:0.000463287847248139 50312 chr9 138378954 138378954 1 + T C rs61735037 138378954 + 138378934 138378974 41 GCAGAGGGCCCCACCGCTCTTGGGACAGGGGGCCCAGCCAG GCAGAGGGCCCCACCGCTCTCGGGACAGGGGGCCCAGCCAG Direct Gain 0 0.968609094637901 0 0.955157816410065 prediction 0.937218189275801 Functional Gain - PPP1R26 ENSG00000196422 CDS Human protein_coding chr9:138378954 chr9:138378954 synonymous SNV . 0 21 hm5C_associated_SNPs_130254 0 0 1 0 0 Ribosome 0 0.500231644262911 0.91031563282013 0.000463288525821781 hm5C_site_50312 DeepMRMD:0.91031563282013;iRNA_m5C:0.000463288525821781 50313 chr1 246729990 246729990 1 + A C rs3795474 246729990 + 246729970 246730010 41 GGAGAGGAGGAGCGGGATGCAGGGGACCCGCCGGCTCGCGG GGAGAGGAGGAGCGGGATGCCGGGGACCCGCCGGCTCGCGG Direct Gain 0 0.968600183230266 0 0.975498974323273 prediction 0.937200366460533 Functional Gain - CNST ENSG00000162852 UTR5 Human protein_coding chr1:246729990 chr1:246729990 . . 0 21 hm5C_associated_SNPs_130255 0 0 1 0 0 Ribosome 0 0.500231643952283 0.950997948646546 0.000463287904565401 hm5C_site_50313 DeepMRMD:0.950997948646546;iRNA_m5C:0.000463287904565401 50314 chr7 150066900 150066900 1 + A G rs10237887 150066900 - 150066880 150066920 41 GCTCCTCTTGGGGATGTTCCTGGGGATACTTCCGCGGCTGC GCTCCTCTTGGGGATGTTCCCGGGGATACTTCCGCGGCTGC Direct Gain 0 0.968546066828489 0 0.981865882873535 prediction 0.937092133656977 Functional Gain - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150066900 chr7:150066900 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130256 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921093 0.96373176574707 0.0004632878421853 hm5C_site_50314 DeepMRMD:0.96373176574707;iRNA_m5C:0.0004632878421853 50315 chr7 143826855 143826855 1 + A G UCEC 143826855 - 143826835 143826875 41 TGGCGGCCAGGATGCGCAAGTAGGAGACCAGCACCAGGCAG TGGCGGCCAGGATGCGCAAGCAGGAGACCAGCACCAGGCAG Direct Gain 0 0.968536064406708 0 0.897119343280792 prediction 0.937072128813416 Functional Gain - OR2A14 ENSG00000221938 CDS Human protein_coding chr7:143826855 chr7:143826855 nonsynonymous SNV 0.812 3 21 hm5C_associated_SNPs_130257 0 0 0 0 0 unknown 0 0.500231643921093 0.794238686561584 0.000463287842185078 hm5C_site_50315 DeepMRMD:0.794238686561584;iRNA_m5C:0.000463287842185078 50316 chr11 92534237 92534237 1 + A G LUAD 92534237 - 92534217 92534257 41 GGAATGAGGGAGTGCTTTACTGGGATGCCCCCATCTACTGC GGAATGAGGGAGTGCTTTACCGGGATGCCCCCATCTACTGC Direct Gain 0 0.968477590187331 0 0.967614233493805 prediction 0.936955180374662 Functional Gain - FAT3 ENSG00000165323 CDS Human protein_coding chr11:92534237 chr11:92534237 synonymous SNV . 0 21 hm5C_associated_SNPs_130258 0 0 0 0 0 nucleoplasm 0 0.500231643921092 0.93522846698761 0.000463287842184856 hm5C_site_50316 DeepMRMD:0.93522846698761;iRNA_m5C:0.000463287842184856 50317 chr18 29178601 29178601 1 + A G KIRP 29178601 - 29178581 29178621 41 TGACGACAGCCGTGGTGGAATAGGAGTAGGGGCTCAGCAGG TGACGACAGCCGTGGTGGAACAGGAGTAGGGGCTCAGCAGG Direct Gain 0 0.968420449517547 0 0.818828821182251 prediction 0.936840899035094 Functional Gain - TTR ENSG00000118271 CDS Human protein_coding chr18:29178601 chr18:29178601 nonsynonymous SNV 0.950 5 21 hm5C_associated_SNPs_130259 0 0 0 0 0 cytosol 0 0.500231643580826 0.637657642364502 0.000463287161651227 hm5C_site_50317 DeepMRMD:0.637657642364502;iRNA_m5C:0.000463287161651227 50318 chr12 5154179 5154179 1 + A G COAD 5154179 - 5154159 5154199 41 GGGCGGGCGCGGGAGGCTGGTGGGGCGCCGGAGGGTGGCGG GGGCGGGCGCGGGAGGCTGGCGGGGCGCCGGAGGGTGGCGG Direct Gain 0 0.968373290947841 0 0.970149636268616 prediction 0.936746581895682 Functional Gain - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5154179 chr12:5154179 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_130260 0 0 0 0 0 exosome 0 0.50023164392141 0.940299272537232 0.000463287842819016 hm5C_site_50318 DeepMRMD:0.940299272537232;iRNA_m5C:0.000463287842819016 50319 chr4 189068146 189068146 1 + T C BLCA 189068146 + 189068126 189068166 41 TCACCAGTGGGAGACACTACTGGGAGGTGGAGGTGGGAAAC TCACCAGTGGGAGACACTACCGGGAGGTGGAGGTGGGAAAC Direct Gain 0 0.968365316460323 0 0.918521285057068 prediction 0.936730632920646 Functional Gain - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189068146 chr4:189068146 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_130261 0 0 0 0 0 nucleus 0 0.500231643921003 0.837042570114136 0.000463287842006777 hm5C_site_50319 DeepMRMD:0.837042570114136;iRNA_m5C:0.000463287842006777 50320 chr2 242148929 242148929 1 + A G COAD 242148929 - 242148909 242148949 41 TGGGGGCTGAGGCGGCAAACTGGGGCCGAGGCCTCTCCTGG TGGGGGCTGAGGCGGCAAACCGGGGCCGAGGCCTCTCCTGG Direct Gain 0 0.968356921278824 0 0.976392984390259 prediction 0.936713842557648 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242148929 chr2:242148929 nonsynonymous SNV 0.959 0 21 hm5C_associated_SNPs_130262 0 0 0 0 0 chromatin 0 0.500231643921092 0.952785968780518 0.000463287842184856 hm5C_site_50320 DeepMRMD:0.952785968780518;iRNA_m5C:0.000463287842184856 50321 chr19 51729309 51729309 1 + G C LUSC 51729309 + 51729289 51729329 41 GCTGGAGCTGGTGTGACTACGGAGAGAACCATCCAGCTCAA GCTGGAGCTGGTGTGACTACCGAGAGAACCATCCAGCTCAA Direct Gain 0 0.96835678142668 0 0.951133668422699 prediction 0.93671356285336 Functional Gain - CD33 ENSG00000105383 CDS Human protein_coding chr19:51729309 chr19:51729309 synonymous SNV . 0 21 hm5C_associated_SNPs_130263 0 0 0 0 1 exosome 0 0.500405691865644 0.902267336845398 0.000811383731287751 hm5C_site_50321 DeepMRMD:0.902267336845398;iRNA_m5C:0.000811383731287751 50322 chr10 102763427 102763427 1 + C G OV 102763427 - 102763407 102763447 41 CTGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGCAGGGCCC CTGAAGAGGAGGAGGAAGAGCAGGAGGAGGAGGCAGGGCCC Direct Gain 0 0.968356769036032 0 0.920190930366516 prediction 0.936713538072065 Functional Gain - LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102763427 chr10:102763427 nonsynonymous SNV 0.985 1 21 hm5C_associated_SNPs_130264 0 0 0 0 0 Ribosome 0 0.500231643921092 0.840381860733032 0.000463287842184856 hm5C_site_50322 DeepMRMD:0.840381860733032;iRNA_m5C:0.000463287842184856 50323 chr5 8457852 8457852 1 + A C rs559131234 8457852 + 8457832 8457872 41 GGGAGGAGGTCGCGCTGTCCATGGGCGTCCTTGGCCTGCGC GGGAGGAGGTCGCGCTGTCCCTGGGCGTCCTTGGCCTGCGC Direct Gain 0 0.968340350676557 0 0.828224897384644 prediction 0.936680701353114 Functional Gain - MIR4458HG ENSG00000247516 ncRNA_exonic Human lincRNA chr5:8457852 chr5:8457852 . . 0 21 hm5C_associated_SNPs_130265 0 0 1 0 1 unknown 0 0.500231643965354 0.656449794769288 0.000463287930707823 hm5C_site_50323 DeepMRMD:0.656449794769288;iRNA_m5C:0.000463287930707823 50324 chr14 29236984 29236984 1 + G C LUSC 29236984 + 29236964 29237004 41 GCGAGGGCGGCAAGGACGGGGAGGGGGGCAAGGAGGGCGAG GCGAGGGCGGCAAGGACGGGCAGGGGGGCAAGGAGGGCGAG Direct Gain 0 0.968338407666972 0 0.857220888137817 prediction 0.936676815333944 Functional Gain - FOXG1 ENSG00000176165 CDS Human protein_coding chr14:29236984 chr14:29236984 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130266 0 0 0 0 0 Cytosol 0 0.500231643907887 0.714441776275634 0.000463287815774871 hm5C_site_50324 DeepMRMD:0.714441776275634;iRNA_m5C:0.000463287815774871 50325 chr9 138649179 138649179 1 + C G rs117286274 138649179 - 138649159 138649199 41 AGCCAGCAGTTCAGAAAGACGGGGATGAACAGGTTCCGCAG AGCCAGCAGTTCAGAAAGACCGGGATGAACAGGTTCCGCAG Direct Gain 0 0.968285149119294 0 0.922938466072083 prediction 0.936570298238588 Functional Gain - KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138649179 chr9:138649179 synonymous SNV . 0 21 hm5C_associated_SNPs_130267 3 0 0 0 0 exosome 0 0.500231644350645 0.845876932144166 0.000463288701290088 hm5C_site_50325 DeepMRMD:0.845876932144166;iRNA_m5C:0.000463288701290088 not specified not specified 50326 chr12 7289596 7289596 1 + A G UCEC 7289596 - 7289576 7289616 41 AGTGGTCACTGAGGCTGTCCTGGGGCCCAGAGCCCAGCCCA AGTGGTCACTGAGGCTGTCCCGGGGCCCAGAGCCCAGCCCA Direct Gain 0 0.96827252483558 0 0.964770317077637 prediction 0.936545049671161 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7289596 chr12:7289596 nonsynonymous SNV 0.388 0 21 hm5C_associated_SNPs_130268 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921835 0.929540634155274 0.000463287843670113 hm5C_site_50326 DeepMRMD:0.929540634155274;iRNA_m5C:0.000463287843670113 50327 chr6 30314273 30314273 1 + C G CESC 30314273 - 30314253 30314293 41 AGTAAATGCCCGGGATCATTGAGGAAGCGTTGGCTGCGCTG AGTAAATGCCCGGGATCATTCAGGAAGCGTTGGCTGCGCTG Direct Gain 0 0.968248354413888 0 0.929848253726959 prediction 0.936496708827776 Functional Gain - RPP21;TRIM39-RPP21 ENSG00000241370;ENSG00000248167 CDS Human other chr6:30314273 chr6:30314273 synonymous SNV . 0 21 hm5C_associated_SNPs_130269 0 0 0 0 0 unknown 0 0.500231644028042 0.859696507453918 0.000463288056083533 hm5C_site_50327 DeepMRMD:0.859696507453918;iRNA_m5C:0.000463288056083533 50328 chr1 219347247 219347247 1 + G C LUAD 219347247 + 219347227 219347267 41 TCAGCGATGGCGGCTGCGTCGGGGTCGGTTCTGCAGCGCTG TCAGCGATGGCGGCTGCGTCCGGGTCGGTTCTGCAGCGCTG Direct Gain 0 0.968235379569493 0 0.892237782478333 prediction 0.936470759138986 Functional Gain - LYPLAL1 ENSG00000143353 CDS Human protein_coding chr1:219347247 chr1:219347247 synonymous SNV . 0 21 hm5C_associated_SNPs_130270 0 0 1 0 1 Ribosome 0 0.500231643959069 0.784475564956666 0.000463287918138544 hm5C_site_50328 DeepMRMD:0.784475564956666;iRNA_m5C:0.000463287918138544 50329 chr17 38340572 38340572 1 + G C LUSC 38340572 + 38340552 38340592 41 CCTACCAGGGGCTGCTTCAAGAGGAAGAGGGGGCCGGCCAC CCTACCAGGGGCTGCTTCAACAGGAAGAGGGGGCCGGCCAC Direct Gain 0 0.968207388283094 0 0.867783486843109 prediction 0.936414776566189 Functional Gain - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38340572 chr17:38340572 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_130271 0 0 0 0 1 chromatin 0 0.500231643921092 0.735566973686218 0.000463287842184856 hm5C_site_50329 DeepMRMD:0.735566973686218;iRNA_m5C:0.000463287842184856 50330 chr19 12296615 12296615 1 + G C HNSC 12296615 + 12296595 12296635 41 TTCAGGACTCGGTGGCTTTTGAGGATGTAGATGTGAACTTC TTCAGGACTCGGTGGCTTTTCAGGATGTAGATGTGAACTTC Direct Gain 0 0.968190765476471 0 0.928457617759705 prediction 0.936381530952942 Functional Gain - ZNF136 ENSG00000196646 CDS Human protein_coding chr19:12296615 chr19:12296615 nonsynonymous SNV 0.786 3 21 hm5C_associated_SNPs_130272 0 0 1 0 1 insoluble cytoplasm 0 0.500231742995369 0.85691523551941 0.000463485990737311 hm5C_site_50330 DeepMRMD:0.85691523551941;iRNA_m5C:0.000463485990737311 50331 chr15 49170407 49170407 1 + G C HNSC 49170407 + 49170387 49170427 41 CTGAGTTGTCCGAGCTGTATGAAGAGAGCAGTGACCTGCAG CTGAGTTGTCCGAGCTGTATCAAGAGAGCAGTGACCTGCAG Direct Gain 0 0.968180981601432 0 0.893294215202332 prediction 0.936361963202863 Functional Gain - EID1 ENSG00000255302 CDS Human protein_coding chr15:49170407 chr15:49170407 nonsynonymous SNV 0.802 3 21 hm5C_associated_SNPs_130273 0 0 1 0 0 Ribosome 0 0.5002314020572 0.786588430404664 0.000462804114400583 hm5C_site_50331 DeepMRMD:0.786588430404664;iRNA_m5C:0.000462804114400583 50332 chr4 52709382 52709382 1 + G C rs557754859 52709382 + 52709362 52709402 41 GCGAGCGCGGGAGCCTGGGCGGCGAGCCGGGTGTGAGCTGC GCGAGCGCGGGAGCCTGGGCCGCGAGCCGGGTGTGAGCTGC Direct Gain 0 0.968175975107487 0 0.917407035827637 prediction 0.936351950214973 Functional Gain - DCUN1D4 ENSG00000109184 UTR5 Human protein_coding chr4:52709382 chr4:52709382 . . 0 21 hm5C_associated_SNPs_130274 0 0 1 0 1 Ribosome 0 0.50023164448792 0.834814071655274 0.000463288975839138 hm5C_site_50332 DeepMRMD:0.834814071655274;iRNA_m5C:0.000463288975839138 50333 chr19 30934626 30934626 1 + C G LUAD 30934626 - 30934606 30934646 41 CTTCTCCTCGGGGTTGGGCCGGGGATGGAGCTCGGGGAAGG CTTCTCCTCGGGGTTGGGCCCGGGATGGAGCTCGGGGAAGG Direct Gain 0 0.968154582746746 0 0.878316164016724 prediction 0.936309165493493 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934626 chr19:30934626 nonsynonymous SNV 0.819 3 21 hm5C_associated_SNPs_130275 0 0 0 0 0 exosome 0 0.500234221033865 0.756632328033448 0.000468442067730779 hm5C_site_50333 DeepMRMD:0.756632328033448;iRNA_m5C:0.000468442067730779 50334 chr10 43327797 43327797 1 + T C rs6593498 43327797 + 43327777 43327817 41 GTAGGAGGATCACTTGAGCTTGGGAGGTTGAGGCTGCAGTG GTAGGAGGATCACTTGAGCTCGGGAGGTTGAGGCTGCAGTG Direct Gain 0 0.968038095561058 0 0.942622780799866 prediction 0.936076191122116 Functional Gain - BMS1 ENSG00000165733 UTR3 Human protein_coding chr10:43327797 chr10:43327797 . . 0 21 hm5C_associated_SNPs_130276 0 0 0 0 0 chromatin 0 0.500231646236793 0.885245561599732 0.000463292473585675 hm5C_site_50334 DeepMRMD:0.885245561599732;iRNA_m5C:0.000463292473585675 50335 chr19 45412238 45412238 1 + G C COAD 45412238 + 45412218 45412258 41 AGGAGCGGGCCCAGGCCTGGGGCGAGCGGCTGCGCGCGCGG AGGAGCGGGCCCAGGCCTGGCGCGAGCGGCTGCGCGCGCGG Direct Gain 0 0.967972124133834 0 0.748048424720764 prediction 0.935944248267669 Functional Gain - APOE ENSG00000130203 CDS Human protein_coding chr19:45412238 chr19:45412238 nonsynonymous SNV 0.009 0 21 hm5C_associated_SNPs_130277 0 0 1 0 0 Cytosol 0 0.500231643921093 0.496096849441528 0.000463287842185078 hm5C_site_50335 DeepMRMD:0.496096849441528;iRNA_m5C:0.000463287842185078 50336 chr1 228003539 228003539 1 + A C LUAD 228003539 + 228003519 228003559 41 CCACAGACAGCCAGAGAACCAGGGAATCTCCCTAACTGGCA CCACAGACAGCCAGAGAACCCGGGAATCTCCCTAACTGGCA Direct Gain 0 0.967937484705604 0 0.734653472900391 prediction 0.935874969411208 Functional Gain - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228003539 chr1:228003539 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_130278 0 0 0 0 1 unknown 0 0.500231643921092 0.469306945800782 0.000463287842184856 hm5C_site_50336 DeepMRMD:0.469306945800782;iRNA_m5C:0.000463287842184856 50337 chr1 162351775 162351775 1 + C G rs201079464 162351775 - 162351755 162351795 41 GAGCCCAGAGGGGCAGAGCCGGGGGCCACGGGCTTGGACAA GAGCCCAGAGGGGCAGAGCCCGGGGCCACGGGCTTGGACAA Direct Gain 0 0.96791690634463 0 0.941654205322266 prediction 0.93583381268926 Functional Gain - C1orf226 ENSG00000239887;ENSG00000254706 CDS Human other chr1:162351775 chr1:162351775 synonymous SNV . 0 21 hm5C_associated_SNPs_130279 0 0 0 0 0 nucleus 0 0.500231643921093 0.883308410644532 0.000463287842185078 hm5C_site_50337 DeepMRMD:0.883308410644532;iRNA_m5C:0.000463287842185078 50338 chr11 58346912 58346912 1 + G C rs530045042 58346912 + 58346892 58346932 41 CAGCCGCGTGCTGAGGGGAGGTCGGGACCGAGGCCGGGCCG CAGCCGCGTGCTGAGGGGAGCTCGGGACCGAGGCCGGGCCG Direct Gain 0 0.967863073891711 0 0.469484925270081 prediction 0.935726147783422 Functional Gain - ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58346912 chr11:58346912 nonsynonymous SNV 0.990 1 21 hm5C_associated_SNPs_130280 0 0 1 0 0 chromatin 0 0.500231643921066 0 0.000463287842131344 hm5C_site_50338 DeepMRMD:0;iRNA_m5C:0.000463287842131344 50339 chr11 554007 554007 1 + A G UCEC 554007 - 553987 554027 41 ATCTCGTGGCCTTGGGTGCTTGGGAGGTGAAGGGACCAGGT ATCTCGTGGCCTTGGGTGCTCGGGAGGTGAAGGGACCAGGT Direct Gain 0 0.967842368280736 0 0.896193981170654 prediction 0.935684736561473 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:554007 chr11:554007 nonsynonymous SNV 0.007 2 21 hm5C_associated_SNPs_130281 0 0 0 0 0 Nucleus 0 0.500231643920878 0.792387962341308 0.000463287841756754 hm5C_site_50339 DeepMRMD:0.792387962341308;iRNA_m5C:0.000463287841756754 50340 chr12 14927678 14927678 1 + G C BLCA 14927678 + 14927658 14927698 41 AGCTCGCCATCCGCAACGACGAGGAGTTAAACAAGCTGCTG AGCTCGCCATCCGCAACGACCAGGAGTTAAACAAGCTGCTG Direct Gain 0 0.967823787793987 0 0.821003675460815 prediction 0.935647575587974 Functional Gain - H2AFJ ENSG00000246705 CDS Human protein_coding chr12:14927678 chr12:14927678 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130282 0 0 0 0 0 Ribosome 0 0.500231643919428 0.64200735092163 0.000463287838856852 hm5C_site_50340 DeepMRMD:0.64200735092163;iRNA_m5C:0.000463287838856852 50341 chr18 12725500 12725500 1 + T C BLCA 12725500 + 12725480 12725520 41 AGTTCTTGGAGATTACTCTTTGGCAGTGGTCTTCCCCCTGC AGTTCTTGGAGATTACTCTTCGGCAGTGGTCTTCCCCCTGC Direct Gain 0 0.967811213373706 0 0.672155022621155 prediction 0.935622426747413 Functional Gain - PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12725500 chr18:12725500 synonymous SNV . 0 21 hm5C_associated_SNPs_130283 0 0 1 1 1 Ribosome 0 0.500231639526678 0.34431004524231 0.000463279053356747 hm5C_site_50341 DeepMRMD:0.34431004524231;iRNA_m5C:0.000463279053356747 50342 chr10 81272893 81272893 1 + T C rs375383701 81272893 + 81272873 81272913 41 GGCTCCCAAGGTGGCAGTGGTGGCAGCAGTGATCCTCCGAA GGCTCCCAAGGTGGCAGTGGCGGCAGCAGTGATCCTCCGAA Direct Gain 0 0.967792048961204 0 0.721039235591888 prediction 0.935584097922408 Functional Gain - EIF5AL1 ENSG00000253626 UTR3 Human protein_coding chr10:81272893 chr10:81272893 . . 0 21 hm5C_associated_SNPs_130284 0 0 0 0 0 Ribosome 0 0.50023164487596 0.442078471183776 0.000463289751920559 hm5C_site_50342 DeepMRMD:0.442078471183776;iRNA_m5C:0.000463289751920559 50343 chr20 44420682 44420682 1 + T C rs2664591 44420682 + 44420662 44420702 41 GCCGAGCAGCCGCGGGGACCTAGCGGGGCCGAGAGGGGCGG GCCGAGCAGCCGCGGGGACCCAGCGGGGCCGAGAGGGGCGG Direct Gain 0 0.967773991471065 0 0.829684615135193 prediction 0.935547982942131 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44420682 chr20:44420682 synonymous SNV . 0 21 hm5C_associated_SNPs_130285 0 0 1 0 1 cytosol 0 0.500231643921818 0.659369230270386 0.000463287843635252 hm5C_site_50343 DeepMRMD:0.659369230270386;iRNA_m5C:0.000463287843635252 50344 chr10 89264593 89264593 1 + C G rs2233166 89264593 - 89264573 89264613 41 GAGGGCAGGGGGCGGGTCTGGAGGGCGCTTCCGGCCGGCGG GAGGGCAGGGGGCGGGTCTGCAGGGCGCTTCCGGCCGGCGG Direct Gain 0 0.967758257569441 0 0.94119393825531 prediction 0.935516515138881 Functional Gain - MINPP1 ENSG00000107789 upstream Human protein_coding chr10:89264593 chr10:89264593 . . 0 21 hm5C_associated_SNPs_130286 0 0 0 0 0 Ribosome 0 0.500231643921109 0.88238787651062 0.000463287842217719 hm5C_site_50344 DeepMRMD:0.88238787651062;iRNA_m5C:0.000463287842217719 50345 chr9 36170617 36170617 1 + G C BLCA 36170617 + 36170597 36170637 41 CTTCCACACCATGGTGACCTGTGGGGGGACAGTGTACTCAG CTTCCACACCATGGTGACCTCTGGGGGGACAGTGTACTCAG Direct Gain 0 0.967727236320112 0 0.862393379211426 prediction 0.935454472640225 Functional Gain - CCIN ENSG00000185972 CDS Human protein_coding chr9:36170617 chr9:36170617 nonsynonymous SNV 0.983 4 21 hm5C_associated_SNPs_130287 0 0 0 0 0 exosome 0 0.500231643910625 0.724786758422852 0.000463287821250491 hm5C_site_50345 DeepMRMD:0.724786758422852;iRNA_m5C:0.000463287821250491 50346 chr3 149205519 149205519 1 + A C rs571739504 149205519 + 149205499 149205539 41 TGCCTCATGGCCAATAGTACATGGGGCTACCCCTTCCACGA TGCCTCATGGCCAATAGTACCTGGGGCTACCCCTTCCACGA Direct Gain 0 0.96772383554403 0 0.816462278366089 prediction 0.93544767108806 Functional Gain - TM4SF4 ENSG00000169903 CDS Human protein_coding chr3:149205519 chr3:149205519 synonymous SNV . 0 21 hm5C_associated_SNPs_130288 0 0 0 0 1 exosome 0 0.500231643921092 0.632924556732178 0.000463287842184856 hm5C_site_50346 DeepMRMD:0.632924556732178;iRNA_m5C:0.000463287842184856 50347 chr3 53845759 53845759 1 + A G rs7614233 53845759 - 53845739 53845779 41 GGGCCTGGTGCCCTGGTACATGGGAGAAGCAGACTCCACAG GGGCCTGGTGCCCTGGTACACGGGAGAAGCAGACTCCACAG Direct Gain 0 0.967708357671274 0 0.955984592437744 prediction 0.935416715342547 Functional Gain - CACNA1D ENSG00000157388 UTR3 Human protein_coding chr3:53845759 chr3:53845759 . . 0 21 hm5C_associated_SNPs_130289 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.911969184875488 0.000463287842184856 hm5C_site_50347 DeepMRMD:0.911969184875488;iRNA_m5C:0.000463287842184856 50348 chr19 36279027 36279027 1 + C G BLCA 36279027 - 36279007 36279047 41 GGGGGTGGGCAGGAGGGGAAGAGGAGGAGGAAGAGGCAGGT GGGGGTGGGCAGGAGGGGAACAGGAGGAGGAAGAGGCAGGT Direct Gain 0 0.967558443597846 0 0.801299452781677 prediction 0.935116887195691 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36279027 chr19:36279027 nonsynonymous SNV 0.649 4 21 hm5C_associated_SNPs_130290 0 0 0 0 0 chromatin 0 0.500231643921052 0.602598905563354 0.000463287842104254 hm5C_site_50348 DeepMRMD:0.602598905563354;iRNA_m5C:0.000463287842104254 50349 chr14 37667149 37667149 1 + A G rs115976598 37667149 - 37667129 37667169 41 CGGAGGAGCGGGGCGGCGCGTGGGGCCTACGGGGCGGCGGC CGGAGGAGCGGGGCGGCGCGCGGGGCCTACGGGGCGGCGGC Direct Gain 0 0.967552838991777 0 0.964151620864868 prediction 0.935105677983554 Functional Gain - MIPOL1 ENSG00000151338 UTR5 Human protein_coding chr14:37667149 chr14:37667149 . . 0 21 hm5C_associated_SNPs_130291 0 0 0 0 0 chromatin 0 0.500231643921092 0.928303241729736 0.000463287842184856 hm5C_site_50349 DeepMRMD:0.928303241729736;iRNA_m5C:0.000463287842184856 50350 chr15 76496340 76496340 1 + C G rs937733 76496340 - 76496320 76496360 41 GCTGCTGGGATGGCAGCGGCGGGGGAGAAGGGCCGGGCTCA GCTGCTGGGATGGCAGCGGCCGGGGAGAAGGGCCGGGCTCA Direct Gain 0 0.967540708179564 0 0.979872345924377 prediction 0.935081416359128 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76496340 chr15:76496340 nonsynonymous SNV 0.013 0 21 hm5C_associated_SNPs_130292 0 0 1 0 0 Nucleus 0 0.500231643921092 0.959744691848754 0.000463287842184856 hm5C_site_50350 DeepMRMD:0.959744691848754;iRNA_m5C:0.000463287842184856 50351 chrX 69255458 69255458 1 + A G BLCA 69255458 - 69255438 69255478 41 GAGGCAAAATGGGGGGAATCTAGGATGCAGGGGCTTCACCC GAGGCAAAATGGGGGGAATCCAGGATGCAGGGGCTTCACCC Direct Gain 0 0.967532714283871 0 0.872241735458374 prediction 0.935065428567743 Functional Gain - EDA ENSG00000158813 CDS Human protein_coding chrX:69255458 chrX:69255458 stoploss 1.000 0 21 hm5C_associated_SNPs_130293 0 0 0 0 0 cytosol 0 0.500231643921092 0.744483470916748 0.000463287842184856 hm5C_site_50351 DeepMRMD:0.744483470916748;iRNA_m5C:0.000463287842184856 50352 chr1 220316379 220316379 1 + T C UCEC 220316379 + 220316359 220316399 41 TGTGGAGAGTGCGTGTGCAATGCGAGACTCATTTCTTGGAA TGTGGAGAGTGCGTGTGCAACGCGAGACTCATTTCTTGGAA Direct Gain 0 0.967525025624295 0 0.779182553291321 prediction 0.935050051248591 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220316379 chr1:220316379 nonsynonymous SNV 0.776 1 21 hm5C_associated_SNPs_130294 0 0 1 0 2 Ribosome 0 0.500230660699676 0.558365106582642 0.000461321399351844 hm5C_site_50352 DeepMRMD:0.558365106582642;iRNA_m5C:0.000461321399351844 50353 chr17 74073351 74073351 1 + T C SKCM 74073351 + 74073331 74073371 41 GCACCCACAGTGGCAGCGTGTTGGAGCGCGAGTCCAGCGAC GCACCCACAGTGGCAGCGTGCTGGAGCGCGAGTCCAGCGAC Direct Gain 0 0.967523848795834 0 0.838688671588898 prediction 0.935047697591668 Functional Gain - GALR2 ENSG00000182687 CDS Human protein_coding chr17:74073351 chr17:74073351 synonymous SNV . 0 21 hm5C_associated_SNPs_130295 0 0 0 0 0 exosome 0 0.500390119604411 0.677377343177796 0.000780239208822087 hm5C_site_50353 DeepMRMD:0.677377343177796;iRNA_m5C:0.000780239208822087 50354 chr1 10166582 10166582 1 + A G LUAD 10166582 - 10166562 10166602 41 GCACTGGGTGAGGCGGGTGGTAGGGGTGGACCCGTGCTGCT GCACTGGGTGAGGCGGGTGGCAGGGGTGGACCCGTGCTGCT Direct Gain 0 0.967481735624422 0 0.938096523284912 prediction 0.934963471248845 Functional Gain - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10166582 chr1:10166582 synonymous SNV . 0 21 hm5C_associated_SNPs_130296 0 0 0 0 0 Cytosol 0 0.500231032883259 0.876193046569824 0.00046206576651886 hm5C_site_50354 DeepMRMD:0.876193046569824;iRNA_m5C:0.00046206576651886 50355 chr12 52627245 52627245 1 + T C UCEC 52627245 + 52627225 52627265 41 GTGGCCGTGCGCTCTGCCTATGGGGGCCCGGTGGGCGCCGG GTGGCCGTGCGCTCTGCCTACGGGGGCCCGGTGGGCGCCGG Direct Gain 0 0.967474795115482 0 0.975444078445435 prediction 0.934949590230964 Functional Gain - KRT7 ENSG00000135480 CDS Human protein_coding chr12:52627245 chr12:52627245 synonymous SNV . 0 21 hm5C_associated_SNPs_130297 0 0 0 0 0 Cytosol 0 0.500231645323003 0.95088815689087 0.000463290646006698 hm5C_site_50355 DeepMRMD:0.95088815689087;iRNA_m5C:0.000463290646006698 50356 chr4 71201647 71201647 1 + T C UCEC 71201647 + 71201627 71201667 41 ACTACCGAGGGAGCCAGTATTTGGATGGAGAGAGATACTGC ACTACCGAGGGAGCCAGTATCTGGATGGAGAGAGATACTGC Direct Gain 0 0.967463249779677 0 0.87549215555191 prediction 0.934926499559354 Functional Gain - CABS1 ENSG00000145309 CDS Human protein_coding chr4:71201647 chr4:71201647 synonymous SNV . 0 21 hm5C_associated_SNPs_130298 0 0 0 0 0 unknown 0 0.500231448807228 0.75098431110382 0.000462897614456059 hm5C_site_50356 DeepMRMD:0.75098431110382;iRNA_m5C:0.000462897614456059 50357 chr12 81111214 81111214 1 + C G BLCA 81111214 - 81111194 81111234 41 ATGTAGCGGATGGCATTCCTGAGGATCTCCACCTTGGGCAG ATGTAGCGGATGGCATTCCTCAGGATCTCCACCTTGGGCAG Direct Gain 0 0.967443409691295 0 0.957124590873718 prediction 0.934886819382589 Functional Gain - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81111214 chr12:81111214 synonymous SNV . 0 21 hm5C_associated_SNPs_130299 0 0 0 0 0 unknown 0 0.500229162071306 0.914249181747436 0.000458324142612376 hm5C_site_50357 DeepMRMD:0.914249181747436;iRNA_m5C:0.000458324142612376 50358 chr20 36531791 36531791 1 + C G rs190346554 36531791 - 36531771 36531811 41 TGCAGGAAAAGTGCCAGGTAGTGGAGGGCGCCCAGCGCTAC TGCAGGAAAAGTGCCAGGTACTGGAGGGCGCCCAGCGCTAC Direct Gain 0 0.967439914550248 0 0.75227826833725 prediction 0.934879829100495 Functional Gain - VSTM2L ENSG00000132821 CDS Human protein_coding chr20:36531791 chr20:36531791 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130300 0 0 0 0 0 exosome 0 0.500231643944385 0.5045565366745 0.000463287888770259 hm5C_site_50358 DeepMRMD:0.5045565366745;iRNA_m5C:0.000463287888770259 50359 chr1 178517311 178517311 1 + A C rs144670566 178517311 + 178517291 178517331 41 TGGGCTATAGACTGGGCACCAGGGACTATCACCTCGTGCCA TGGGCTATAGACTGGGCACCCGGGACTATCACCTCGTGCCA Direct Gain 0 0.967403122420336 0 0.889864921569824 prediction 0.934806244840671 Functional Gain - C1orf220 ENSG00000184909;ENSG00000213057 UTR3 Human other chr1:178517311 chr1:178517311 . . 0 21 hm5C_associated_SNPs_130301 0 0 0 1 0 unknown 0 0.500231643921093 0.779729843139648 0.000463287842186189 hm5C_site_50359 DeepMRMD:0.779729843139648;iRNA_m5C:0.000463287842186189 50360 chr7 155090096 155090096 1 + T C PAAD 155090096 + 155090076 155090116 41 CGCGGGGCTGGCGGCCAAGGTTGGGGAGATGATCAACGTTT CGCGGGGCTGGCGGCCAAGGCTGGGGAGATGATCAACGTTT Direct Gain 0 0.967393622334308 0 0.652908563613892 prediction 0.934787244668615 Functional Gain - INSIG1 ENSG00000186480 CDS Human protein_coding chr7:155090096 chr7:155090096 nonsynonymous SNV 0.066 0 21 hm5C_associated_SNPs_130302 0 0 1 0 0 Endoplasmic reticulum 0 0.50022107973972 0.305817127227784 0.000442159479440152 hm5C_site_50360 DeepMRMD:0.305817127227784;iRNA_m5C:0.000442159479440152 50361 chr14 32030678 32030678 1 + T C LIHC 32030678 + 32030658 32030698 41 CAGCGTCTGCTGCTTTTTGGTGGGGTGTCGCTCCGGGCTGG CAGCGTCTGCTGCTTTTTGGCGGGGTGTCGCTCCGGGCTGG Direct Gain 0 0.967392993495307 0 0.93347704410553 prediction 0.934785986990614 Functional Gain - NUBPL ENSG00000151413 CDS Human protein_coding chr14:32030678 chr14:32030678 synonymous SNV . 0 21 hm5C_associated_SNPs_130303 0 0 1 0 1 chromatin 0 0.500231643921127 0.86695408821106 0.000463287842254578 hm5C_site_50361 DeepMRMD:0.86695408821106;iRNA_m5C:0.000463287842254578 50362 chr5 122110827 122110827 1 + T C COAD 122110827 + 122110807 122110847 41 CGAGAGGGAACCTCCTCCGCTGGGGGACGGGAAGCCCACCG CGAGAGGGAACCTCCTCCGCCGGGGGACGGGAAGCCCACCG Direct Gain 0 0.967329346743732 0 0.90629243850708 prediction 0.934658693487464 Functional Gain - SNX2 ENSG00000205302 CDS Human protein_coding chr5:122110827 chr5:122110827 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_130304 0 0 1 0 1 Ribosome 0 0.500231643921092 0.81258487701416 0.000463287842184856 hm5C_site_50362 DeepMRMD:0.81258487701416;iRNA_m5C:0.000463287842184856 50363 chr2 241808313 241808313 1 + C G BRCA 241808313 - 241808293 241808333 41 GGGCTTGAGCAGGGCCTTGGGGGGGGTCACCAGCAGCTTGT GGGCTTGAGCAGGGCCTTGGCGGGGGTCACCAGCAGCTTGT Direct Gain 0 0.967316153339089 0 0.88107818365097 prediction 0.934632306678179 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241808313 chr2:241808313 nonsynonymous SNV 0.009 5 21 hm5C_associated_SNPs_130305 0 0 0 0 0 Cytosol 0 0.500231643921092 0.76215636730194 0.000463287842184856 hm5C_site_50363 DeepMRMD:0.76215636730194;iRNA_m5C:0.000463287842184856 50364 chr11 34149090 34149090 1 + C G LUAD 34149090 - 34149070 34149110 41 CCAAGTAGGCTCTTCACCAAGGGGAGGGGGATGGCGGCAGC CCAAGTAGGCTCTTCACCAACGGGAGGGGGATGGCGGCAGC Direct Gain 0 0.967293041224601 0 0.866612195968628 prediction 0.934586082449202 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34149090 chr11:34149090 synonymous SNV . 0 21 hm5C_associated_SNPs_130306 0 0 0 0 0 chromatin 0 0.500231643921091 0.733224391937256 0.000463287842181304 hm5C_site_50364 DeepMRMD:0.733224391937256;iRNA_m5C:0.000463287842181304 50365 chr22 21991024 21991024 1 + G C LUAD 21991024 + 21991004 21991044 41 GCTGCCTGCTGCGTAAACTGGAGGAGTCCAAAAGGGCCCGG GCTGCCTGCTGCGTAAACTGCAGGAGTCCAAAAGGGCCCGG Direct Gain 0 0.967290906749235 0 0.829141974449158 prediction 0.93458181349847 Functional Gain - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21991024 chr22:21991024 nonsynonymous SNV 0.096 0 21 hm5C_associated_SNPs_130307 0 0 0 0 0 nucleolus 0 0.500231814295472 0.658283948898316 0.000463628590943177 hm5C_site_50365 DeepMRMD:0.658283948898316;iRNA_m5C:0.000463628590943177 50366 chr9 94903903 94903903 1 + G C LUAD 94903903 + 94903883 94903923 41 CTTGGGCTGTCCGCCATACCGGGGGACCTGGATCCCCTGAC CTTGGGCTGTCCGCCATACCCGGGGACCTGGATCCCCTGAC Direct Gain 0 0.967276552421722 0 0.986475646495819 prediction 0.934553104843444 Functional Gain - LINC00475 ENSG00000225511 ncRNA_exonic Human lincRNA chr9:94903903 chr9:94903903 . . 0 21 hm5C_associated_SNPs_130308 0 0 0 0 1 unknown 0 0.500231643921102 0.972951292991638 0.000463287842204174 hm5C_site_50366 DeepMRMD:0.972951292991638;iRNA_m5C:0.000463287842204174 50367 chr2 74684828 74684828 1 + C G LUSC 74684828 - 74684808 74684848 41 AGCAGCGCGGCGGCGGGCCTGAGGGGGATGGCCGCTGAGAC AGCAGCGCGGCGGCGGGCCTCAGGGGGATGGCCGCTGAGAC Direct Gain 0 0.967272473456022 0 0.985837340354919 prediction 0.934544946912043 Functional Gain - INO80B ENSG00000115274 CDS Human protein_coding chr2:74684828 chr2:74684828 stopgain 0.008 0 21 hm5C_associated_SNPs_130309 0 0 0 0 0 Ribosome 0 0.500231643921092 0.971674680709838 0.000463287842184856 hm5C_site_50367 DeepMRMD:0.971674680709838;iRNA_m5C:0.000463287842184856 50368 chr2 27302012 27302012 1 + C G BLCA 27302012 - 27301992 27302032 41 TGTGTAGAGGCTGAAACCTCGAGGAGGGTAGCTGGCGGCCC TGTGTAGAGGCTGAAACCTCCAGGAGGGTAGCTGGCGGCCC Direct Gain 0 0.967263563468863 0 0.942512094974518 prediction 0.934527126937726 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302012 chr2:27302012 nonsynonymous SNV 0.928 1 21 hm5C_associated_SNPs_130310 0 0 0 0 0 Cytosol 0 0.500231643921092 0.885024189949036 0.000463287842184856 hm5C_site_50368 DeepMRMD:0.885024189949036;iRNA_m5C:0.000463287842184856 50369 chr17 8215687 8215687 1 + A G UCEC 8215687 - 8215667 8215707 41 GGAGACCGGGGAGCAGGTTCTGGGGAGGCGGAGCGCCGGGA GGAGACCGGGGAGCAGGTTCCGGGGAGGCGGAGCGCCGGGA Direct Gain 0 0.967243263056144 0 0.962489604949951 prediction 0.934486526112288 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8215687 chr17:8215687 synonymous SNV . 0 21 hm5C_associated_SNPs_130311 0 0 0 0 0 exosome 0 0.500231643832411 0.924979209899902 0.000463287664822731 hm5C_site_50369 DeepMRMD:0.924979209899902;iRNA_m5C:0.000463287664822731 50370 chr19 36113809 36113809 1 + G C LUSC 36113809 + 36113789 36113829 41 CAGGCCAGGCCGCCCTCTCTGAGGAGCTCTGCCAGGGCCTG CAGGCCAGGCCGCCCTCTCTCAGGAGCTCTGCCAGGGCCTG Direct Gain 0 0.967188078617563 0 0.967785775661469 prediction 0.934376157235126 Functional Gain - HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36113809 chr19:36113809 nonsynonymous SNV 0.106 0 21 hm5C_associated_SNPs_130312 0 0 1 0 1 chromatin 0 0.5002316439211 0.935571551322938 0.000463287842200621 hm5C_site_50370 DeepMRMD:0.935571551322938;iRNA_m5C:0.000463287842200621 50371 chr22 46505851 46505851 1 + A G UCEC 46505851 - 46505831 46505871 41 CCTGGGCCCCCAGCCCCACCTGGGAGAAGCAGATGTGACTC CCTGGGCCCCCAGCCCCACCCGGGAGAAGCAGATGTGACTC Direct Gain 0 0.967143335008151 0 0.943796753883362 prediction 0.934286670016301 Functional Gain - MIRLET7BHG ENSG00000197182 CDS Human lincRNA chr22:46505851 chr22:46505851 synonymous SNV . 0 21 hm5C_associated_SNPs_130313 0 0 0 0 0 Nucleus 0 0.500231731290167 0.887593507766724 0.000463462580334584 hm5C_site_50371 DeepMRMD:0.887593507766724;iRNA_m5C:0.000463462580334584 50372 chr10 45498926 45498926 1 + T C HNSC 45498926 + 45498906 45498946 41 GCAGAAGTGGGGCATGACTATTCGATTTGACTCAAGCTTCA GCAGAAGTGGGGCATGACTACTCGATTTGACTCAAGCTTCA Direct Gain 0 0.967072323609885 0 0.335662871599197 prediction 0.93414464721977 Functional Gain - ZNF22 ENSG00000165512 CDS Human protein_coding chr10:45498926 chr10:45498926 nonsynonymous SNV 0.820 0 21 hm5C_associated_SNPs_130314 0 0 1 0 0 exosome 0 0.500231641909414 0 0.000463283818828986 hm5C_site_50372 DeepMRMD:0;iRNA_m5C:0.000463283818828986 50373 chr14 24109065 24109065 1 + A C rs116189534 24109065 + 24109045 24109085 41 GCAGGGGTCAACCCTCTGGTAGGGAGCACTCTGGGGACCAG GCAGGGGTCAACCCTCTGGTCGGGAGCACTCTGGGGACCAG Direct Gain 0 0.967060657076821 0 0.829508662223816 prediction 0.934121314153643 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24109065 chr14:24109065 synonymous SNV . 0 21 hm5C_associated_SNPs_130315 0 0 1 0 2 Ribosome 0 0.500231558041008 0.659017324447632 0.000463116082015436 hm5C_site_50373 DeepMRMD:0.659017324447632;iRNA_m5C:0.000463116082015436 50374 chr1 153004926 153004926 1 + C G rs17880894 153004926 - 153004906 153004946 41 TGGCAGGGCTCCTTGGTTTTGGGGATGCATGGTTCCTGAGG TGGCAGGGCTCCTTGGTTTTCGGGATGCATGGTTCCTGAGG Direct Gain 0 0.967031872138002 0 0.969933271408081 prediction 0.934063744276005 Functional Gain - SPRR1B ENSG00000169469 CDS Human protein_coding chr1:153004926 chr1:153004926 synonymous SNV . 0 21 hm5C_associated_SNPs_130316 0 0 0 0 0 exosome 0 0.500231643921093 0.939866542816162 0.0004632878421853 hm5C_site_50374 DeepMRMD:0.939866542816162;iRNA_m5C:0.0004632878421853 50375 chr14 23356177 23356177 1 + C G rs540203408 23356177 - 23356157 23356197 41 CGGGGGCGGGGCGGGGCGAGGGGGGGCGAGCGGAGGGCGCG CGGGGGCGGGGCGGGGCGAGCGGGGGCGAGCGGAGGGCGCG Direct Gain 0 0.967030047780036 0 0.939116060733795 prediction 0.934060095560072 Functional Gain - REM2 ENSG00000139890 UTR3 Human protein_coding chr14:23356177 chr14:23356177 . . 0 21 hm5C_associated_SNPs_130317 0 0 0 0 0 exosome 0 0.500231643921382 0.87823212146759 0.000463287842764837 hm5C_site_50375 DeepMRMD:0.87823212146759;iRNA_m5C:0.000463287842764837 50376 chr19 34895654 34895654 1 + C G LUSC 34895654 - 34895634 34895674 41 CGTGCAGCAGACGGTGAAACGGGGAGCCTTCCAGCGGGCAA CGTGCAGCAGACGGTGAAACCGGGAGCCTTCCAGCGGGCAA Direct Gain 0 0.966989992956726 0 0.895705819129944 prediction 0.933979985913453 Functional Gain - PDCD2L ENSG00000126249;ENSG00000266953 CDS Human other chr19:34895654 chr19:34895654 nonsynonymous SNV 0.462 3 21 hm5C_associated_SNPs_130318 0 0 0 0 0 Ribosome 0 0.500231643921092 0.791411638259888 0.000463287842184856 hm5C_site_50376 DeepMRMD:0.791411638259888;iRNA_m5C:0.000463287842184856 50377 chr20 33026330 33026330 1 + T C GBM 33026330 + 33026310 33026350 41 GATGCAGGAGCTGGTGAAAATAGGAGAGTCAGTGGGAATAA GATGCAGGAGCTGGTGAAAACAGGAGAGTCAGTGGGAATAA Direct Gain 0 0.966902566589533 0 0.753625750541687 prediction 0.933805133179065 Functional Gain - ITCH ENSG00000078747 CDS Human protein_coding chr20:33026330 chr20:33026330 synonymous SNV . 0 21 hm5C_associated_SNPs_130319 0 0 1 0 0 Ribosome 0 0.500231643921602 0.507251501083374 0.000463287843203153 hm5C_site_50377 DeepMRMD:0.507251501083374;iRNA_m5C:0.000463287843203153 50378 chr9 77257448 77257448 1 + T C rs12115740 77257448 + 77257428 77257468 41 AGTGGGGAGGCAGAAGCCCTTGCCAGGGTGTACAGCAGCAG AGTGGGGAGGCAGAAGCCCTCGCCAGGGTGTACAGCAGCAG Direct Gain 0 0.966890153323122 0 0.738756358623505 prediction 0.933780306646244 Functional Gain - RORB ENSG00000198963 CDS Human protein_coding chr9:77257448 chr9:77257448 synonymous SNV . 0 21 hm5C_associated_SNPs_130320 0 0 0 0 0 exosome 0 0.500231643921093 0.47751271724701 0.000463287842186633 hm5C_site_50378 DeepMRMD:0.47751271724701;iRNA_m5C:0.000463287842186633 50379 chr19 54652038 54652038 1 + A G LUAD 54652038 - 54652018 54652058 41 GCCTTGGGGCCCAGGGCACTTGGGGGTGCTGCGGGGGCGGG GCCTTGGGGCCCAGGGCACTCGGGGGTGCTGCGGGGGCGGG Direct Gain 0 0.966774607008053 0 0.952163279056549 prediction 0.933549214016107 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54652038 chr19:54652038 synonymous SNV . 0 21 hm5C_associated_SNPs_130321 0 0 0 0 0 Ribosome 0 0.50023164390968 0.904326558113098 0.000463287819360003 hm5C_site_50379 DeepMRMD:0.904326558113098;iRNA_m5C:0.000463287819360003 50380 chrX 47273023 47273023 1 + T C rs376401678 47273023 + 47273003 47273043 41 TCACCATTGGATCAAGCTCCTTGGGGGCATATGATCACCAG TCACCATTGGATCAAGCTCCCTGGGGGCATATGATCACCAG Direct Gain 0 0.966751737436492 0 0.839223980903625 prediction 0.933503474872984 Functional Gain - ZNF157 ENSG00000147117 UTR3 Human protein_coding chrX:47273023 chrX:47273023 . . 0 21 hm5C_associated_SNPs_130322 0 0 0 2 0 exosome 0 0.500231643921092 0.67844796180725 0.00046328784218419 hm5C_site_50380 DeepMRMD:0.67844796180725;iRNA_m5C:0.00046328784218419 50381 chr12 109535990 109535990 1 + A G rs538049279 109535990 - 109535970 109536010 41 CCGAGGAGCGTCGCGGTGACTGGGAACCCTGCACAGAGGTG CCGAGGAGCGTCGCGGTGACCGGGAACCCTGCACAGAGGTG Direct Gain 0 0.966733546912989 0 0.922836601734161 prediction 0.933467093825978 Functional Gain - UNG ENSG00000076248 UTR5 Human protein_coding chr12:109535990 chr12:109535990 . . 0 21 hm5C_associated_SNPs_130323 0 0 0 0 0 Ribosome 0 0.500258630948941 0.845673203468322 0.00051726189788126 hm5C_site_50381 DeepMRMD:0.845673203468322;iRNA_m5C:0.00051726189788126 50382 chr22 37334266 37334266 1 + A G SKCM 37334266 - 37334246 37334286 41 GCCCTCGGGCTGTGGGGATGTTGGGGACACATCTGCCGGGC GCCCTCGGGCTGTGGGGATGCTGGGGACACATCTGCCGGGC Direct Gain 0 0.966654132659194 0 0.826958537101746 prediction 0.933308265318388 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37334266 chr22:37334266 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_130324 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.653917074203492 0.000463287842184856 hm5C_site_50382 DeepMRMD:0.653917074203492;iRNA_m5C:0.000463287842184856 50383 chr15 59347914 59347914 1 + T C rs138658453 59347914 + 59347894 59347934 41 CTTGGACACTCCAGATCTCATTGGAGCCAGGGTTCCAGTTC CTTGGACACTCCAGATCTCACTGGAGCCAGGGTTCCAGTTC Direct Gain 0 0.966606611472917 0 0.832375228404999 prediction 0.933213222945834 Functional Gain - RNF111 ENSG00000157450 CDS Human protein_coding chr15:59347914 chr15:59347914 synonymous SNV . 0 21 hm5C_associated_SNPs_130325 0 0 1 0 1 Ribosome 0 0.500231326891728 0.664750456809998 0.000462653783455558 hm5C_site_50383 DeepMRMD:0.664750456809998;iRNA_m5C:0.000462653783455558 50384 chr6 24403411 24403411 1 + T C rs146260219 24403411 + 24403391 24403431 41 CGGCCGCCGAGCCAACCTGATTGGAAGGAGCCGAGCGGCGC CGGCCGCCGAGCCAACCTGACTGGAAGGAGCCGAGCGGCGC Direct Gain 0 0.966597997979899 0 0.349615931510925 prediction 0.933195995959799 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24403411 chr6:24403411 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_130326 0 0 1 0 1 Ribosome 0 0.500231629683041 0 0.000463259366081381 hm5C_site_50384 DeepMRMD:0;iRNA_m5C:0.000463259366081381 50385 chr10 129535857 129535857 1 + A G COAD 129535857 - 129535837 129535877 41 CCATGGCGATGAGCGCCGAGTAGGAGTAGGGCGGCCGCACC CCATGGCGATGAGCGCCGAGCAGGAGTAGGGCGGCCGCACC Direct Gain 0 0.966594626588811 0 0.903170883655548 prediction 0.933189253177622 Functional Gain - FOXI2 ENSG00000186766 CDS Human protein_coding chr10:129535857 chr10:129535857 nonsynonymous SNV 0.984 4 21 hm5C_associated_SNPs_130327 0 0 0 0 0 exosome 0 0.500231642446093 0.806341767311096 0.000463284892185278 hm5C_site_50385 DeepMRMD:0.806341767311096;iRNA_m5C:0.000463284892185278 50386 chr16 67662336 67662336 1 + T C STAD 67662336 + 67662316 67662356 41 AGCCTTACGCCTGCAGCCACTGCGATAAGACCTTCCGCCAG AGCCTTACGCCTGCAGCCACCGCGATAAGACCTTCCGCCAG Direct Gain 0 0.96653917249892 0 0.965506792068481 prediction 0.93307834499784 Functional Gain - CTCF ENSG00000102974 CDS Human protein_coding chr16:67662336 chr16:67662336 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_130328 0 0 1 0 0 Nucleus 0 0.500231643921092 0.931013584136962 0.000463287842184856 hm5C_site_50386 DeepMRMD:0.931013584136962;iRNA_m5C:0.000463287842184856 50387 chr11 1266062 1266062 1 + C G BLCA 1266062 - 1266042 1266082 41 TGTGGGTGGTCCCCGGGATGGAGGAGGGGGTCACCGTGGAA TGTGGGTGGTCCCCGGGATGCAGGAGGGGGTCACCGTGGAA Direct Gain 0 0.966492911575197 0 0.713523864746094 prediction 0.932985823150394 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1266062 chr11:1266062 nonsynonymous SNV 0.004 1 21 hm5C_associated_SNPs_130329 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643919376 0.427047729492188 0.000463287838752269 hm5C_site_50387 DeepMRMD:0.427047729492188;iRNA_m5C:0.000463287838752269 50388 chr4 41984592 41984592 1 + G C ESCA 41984592 + 41984572 41984612 41 TGTAGAAATCGAGGCAAGGGGTGGAGGGCCACTCGCCTGTT TGTAGAAATCGAGGCAAGGGCTGGAGGGCCACTCGCCTGTT Direct Gain 0 0.966481004806855 0 0.815121173858643 prediction 0.93296200961371 Functional Gain - DCAF4L1 ENSG00000182308 CDS Human protein_coding chr4:41984592 chr4:41984592 synonymous SNV . 0 21 hm5C_associated_SNPs_130330 0 0 0 0 0 Nucleus 0 0.500231643921092 0.630242347717286 0.000463287842183302 hm5C_site_50388 DeepMRMD:0.630242347717286;iRNA_m5C:0.000463287842183302 50389 chr4 9784235 9784235 1 + A G HNSC 9784235 - 9784215 9784255 41 GTCCAGTTGGCCAGGTTGTTTGGCAGGTCCAGCCCGCCCCA GTCCAGTTGGCCAGGTTGTTCGGCAGGTCCAGCCCGCCCCA Direct Gain 0 0.966470305637096 0 0.822994470596313 prediction 0.932940611274191 Functional Gain - DRD5 ENSG00000169676 CDS Human protein_coding chr4:9784235 chr4:9784235 synonymous SNV . 0 21 hm5C_associated_SNPs_130331 0 0 0 0 0 unknown 0 0.500231643921092 0.645988941192626 0.000463287842184856 hm5C_site_50389 DeepMRMD:0.645988941192626;iRNA_m5C:0.000463287842184856 50390 chr17 30815150 30815150 1 + C G LUAD 30815150 - 30815130 30815170 41 GCCAGAGCACGGGGTCCGTGGGGGACAGGTGCTTCAGGCGG GCCAGAGCACGGGGTCCGTGCGGGACAGGTGCTTCAGGCGG Direct Gain 0 0.96646707902268 0 0.938494384288788 prediction 0.93293415804536 Functional Gain - CDK5R1 ENSG00000176749 CDS Human protein_coding chr17:30815150 chr17:30815150 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_130332 0 0 0 0 0 chromatin 0 0.500231643921096 0.876988768577576 0.000463287842191296 hm5C_site_50390 DeepMRMD:0.876988768577576;iRNA_m5C:0.000463287842191296 50391 chr11 47431696 47431696 1 + C G LUAD 47431696 - 47431676 47431716 41 AGGGCAAGGGCAGTGAGGAAGAGGAGCCTTGGGCCCGCCAT AGGGCAAGGGCAGTGAGGAACAGGAGCCTTGGGCCCGCCAT Direct Gain 0 0.966448792728854 0 0.942065596580505 prediction 0.932897585457708 Functional Gain - SLC39A13 ENSG00000165915 CDS Human protein_coding chr11:47431696 chr11:47431696 synonymous SNV . 0 21 hm5C_associated_SNPs_130333 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.88413119316101 0.000463287842184856 hm5C_site_50391 DeepMRMD:0.88413119316101;iRNA_m5C:0.000463287842184856 50392 chr7 5340275 5340275 1 + A G STAD 5340275 - 5340255 5340295 41 ACCTGCCAGCTCCCGCTGCTTGGGGCTCACTTTGCCTGCCG ACCTGCCAGCTCCCGCTGCTCGGGGCTCACTTTGCCTGCCG Direct Gain 0 0.966437407327813 0 0.919552803039551 prediction 0.932874814655626 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5340275 chr7:5340275 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130334 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643942835 0.839105606079102 0.000463287885670072 hm5C_site_50392 DeepMRMD:0.839105606079102;iRNA_m5C:0.000463287885670072 50393 chr1 153391770 153391770 1 + T C KIRC 153391770 + 153391750 153391790 41 CATGGAGCGGCGCCCTGTTCTGGGGGAAGCCAGTGATCCAG CATGGAGCGGCGCCCTGTTCCGGGGGAAGCCAGTGATCCAG Direct Gain 0 0.966433828061023 0 0.975096583366394 prediction 0.932867656122046 Functional Gain - S100A7A ENSG00000184330 CDS Human protein_coding chr1:153391770 chr1:153391770 synonymous SNV . 0 21 hm5C_associated_SNPs_130335 0 0 0 0 0 unknown 0 0.50023164378799 0.950193166732788 0.000463287575979798 hm5C_site_50393 DeepMRMD:0.950193166732788;iRNA_m5C:0.000463287575979798 50394 chr1 34663450 34663450 1 + A G COAD 34663450 - 34663430 34663470 41 GAACAGATCTTGGCAAACACTGGGAGCTGCCTCTTCTGAGC GAACAGATCTTGGCAAACACCGGGAGCTGCCTCTTCTGAGC Direct Gain 0 0.966424067503884 0 0.912177801132202 prediction 0.932848135007767 Functional Gain - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34663450 chr1:34663450 synonymous SNV . 0 21 hm5C_associated_SNPs_130336 0 0 0 0 0 unknown 0 0.500231637030441 0.824355602264404 0.000463274060882979 hm5C_site_50394 DeepMRMD:0.824355602264404;iRNA_m5C:0.000463274060882979 50395 chr20 62670238 62670238 1 + C G rs547818966 62670238 - 62670218 62670258 41 CTCCAAGTCCTGGGCCCTCCGGGGAGCGCGGGCTGCGTCGA CTCCAAGTCCTGGGCCCTCCCGGGAGCGCGGGCTGCGTCGA Direct Gain 0 0.966408770341605 0 0.98214465379715 prediction 0.932817540683209 Functional Gain - C20orf204 ENSG00000196421 ncRNA_exonic Human protein_coding chr20:62670238 chr20:62670238 . . 0 21 hm5C_associated_SNPs_130337 0 0 0 0 0 unknown 0 0.500231643918583 0.9642893075943 0.000463287837166204 hm5C_site_50395 DeepMRMD:0.9642893075943;iRNA_m5C:0.000463287837166204 50396 chr9 139443039 139443039 1 + C G rs538613579 139443039 - 139443019 139443059 41 ACCCGCAGGGGGCCTCTGAAGAAGAGAGGGCTGCAGGACAC ACCCGCAGGGGGCCTCTGAACAAGAGAGGGCTGCAGGACAC Direct Gain 0 0.96638691188069 0 0.680016696453094 prediction 0.93277382376138 Functional Gain - NALT1 ENSG00000237886 ncRNA_intronic Human antisense chr9:139443039 chr9:139443039 . . 0 21 hm5C_associated_SNPs_130338 0 0 0 0 0 unknown 0 0.500231643921069 0.360033392906188 0.000463287842138005 hm5C_site_50396 DeepMRMD:0.360033392906188;iRNA_m5C:0.000463287842138005 50397 chr14 55529810 55529810 1 + A G STAD 55529810 - 55529790 55529830 41 TGGAGATGGATATGGCATATTAGGGGTAGGATACTGCCCTC TGGAGATGGATATGGCATATCAGGGGTAGGATACTGCCCTC Direct Gain 0 0.966361039808382 0 0.90740704536438 prediction 0.932722079616765 Functional Gain - MAPK1IP1L ENSG00000168175 CDS Human protein_coding chr14:55529810 chr14:55529810 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130339 0 0 0 0 0 Ribosome 0 0.500231643921125 0.81481409072876 0.000463287842250582 hm5C_site_50397 DeepMRMD:0.81481409072876;iRNA_m5C:0.000463287842250582 50398 chr8 17104772 17104772 1 + C G COAD 17104772 - 17104752 17104792 41 GGAGGAGGCGCTCTTGGTCAGGGGAAAAAGCCAGCTCATCC GGAGGAGGCGCTCTTGGTCACGGGAAAAAGCCAGCTCATCC Direct Gain 0 0.966359619419366 0 0.942568957805634 prediction 0.932719238838732 Functional Gain - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17104772 chr8:17104772 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_130340 0 0 0 0 0 chromatin 0 0.500231643921093 0.885137915611268 0.000463287842185078 hm5C_site_50398 DeepMRMD:0.885137915611268;iRNA_m5C:0.000463287842185078 50399 chr18 21739766 21739766 1 + T C COAD 21739766 + 21739746 21739786 41 GTCAGATGTCTTGAGATATGTTGCAATGCAAGTGCCCATTG GTCAGATGTCTTGAGATATGCTGCAATGCAAGTGCCCATTG Direct Gain 0 0.966355381206513 0 0.30334261059761 prediction 0.932710762413026 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739766 chr18:21739766 nonsynonymous SNV 0.931 0 21 hm5C_associated_SNPs_130341 0 0 1 5 0 Nucleus 0 0.500231644030607 0 0.000463288061214318 hm5C_site_50399 DeepMRMD:0;iRNA_m5C:0.000463288061214318 50400 chr17 19579858 19579858 1 + T C rs117561472 19579858 + 19579838 19579878 41 AGCCTGTGTTCCCAGCTGCTTAGGAGGCTGAAGCAGGAGGA AGCCTGTGTTCCCAGCTGCTCAGGAGGCTGAAGCAGGAGGA Direct Gain 0 0.966294188457937 0 0.923985600471497 prediction 0.932588376915873 Functional Gain - ALDH3A2 ENSG00000072210 UTR3 Human protein_coding chr17:19579858 chr17:19579858 . . 0 21 hm5C_associated_SNPs_130342 1 0 0 0 0 Ribosome 0 0.500231632971426 0.847971200942994 0.000463265942851621 hm5C_site_50400 DeepMRMD:0.847971200942994;iRNA_m5C:0.000463265942851621 Sjögren-Larsson syndrome Sjögren-Larsson syndrome 50401 chr15 76019630 76019630 1 + A C LUSC 76019630 + 76019610 76019650 41 GGGACAAGAACTGGTTCTACAAGGAGGATGTGGCAGGAGGC GGGACAAGAACTGGTTCTACCAGGAGGATGTGGCAGGAGGC Direct Gain 0 0.966241573122806 0 0.921285510063171 prediction 0.932483146245611 Functional Gain - ODF3L1 ENSG00000182950 CDS Human protein_coding chr15:76019630 chr15:76019630 nonsynonymous SNV 0.959 0 21 hm5C_associated_SNPs_130343 0 0 0 0 0 exosome 0 0.500231643921092 0.842571020126342 0.000463287842184856 hm5C_site_50401 DeepMRMD:0.842571020126342;iRNA_m5C:0.000463287842184856 50402 chr17 18054840 18054840 1 + A G STAD 18054840 - 18054820 18054860 41 GGGCAGGGGCAGTGCTGACCTGAGGGCCTCAGGCCGGCCTC GGGCAGGGGCAGTGCTGACCCGAGGGCCTCAGGCCGGCCTC Direct Gain 0 0.966240269683165 0 0.964875280857086 prediction 0.932480539366329 Functional Gain - MYO15A ENSG00000091536 CDS Human protein_coding chr17:18054840 chr17:18054840 nonsynonymous SNV 0.162 2 21 hm5C_associated_SNPs_130344 1 0 0 0 0 chromatin 0 0.500231643921092 0.929750561714172 0.000463287842184856 hm5C_site_50402 DeepMRMD:0.929750561714172;iRNA_m5C:0.000463287842184856 Nonsyndromic Hearing Loss, Recessive Nonsyndromic Hearing Loss, Recessive 50403 chrX 47518826 47518826 1 + G C rs182903303 47518826 + 47518806 47518846 41 GGTGGGATTTAATGGGATTTGGCGGGTTCTAAGGTAGGCGC GGTGGGATTTAATGGGATTTCGCGGGTTCTAAGGTAGGCGC Direct Gain 0 0.966233783349502 0 0.807075798511505 prediction 0.932467566699004 Functional Gain - UXT-AS1 ENSG00000267064 ncRNA_exonic Human antisense chrX:47518826 chrX:47518826 . . 0 21 hm5C_associated_SNPs_130345 0 0 0 0 0 unknown 0 0.500231644317796 0.61415159702301 0.000463288635591308 hm5C_site_50403 DeepMRMD:0.61415159702301;iRNA_m5C:0.000463288635591308 50404 chr19 55107356 55107356 1 + C G BLCA 55107356 - 55107336 55107376 41 CGCTGGGGGCCGACCACTCGGAGGAGAGGTTGTATGCACCG CGCTGGGGGCCGACCACTCGCAGGAGAGGTTGTATGCACCG Direct Gain 0 0.96623159177687 0 0.842512130737305 prediction 0.93246318355374 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55107356 chr19:55107356 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_130346 0 0 0 0 0 exosome 0 0.500231655119688 0.68502426147461 0.000463310239375403 hm5C_site_50404 DeepMRMD:0.68502426147461;iRNA_m5C:0.000463310239375403 50405 chr19 38643557 38643557 1 + C G CESC 38643557 - 38643537 38643577 41 GGCTGGTCAGGCCGCCGGAAGAGGAGTCGCCGCTGGACGTC GGCTGGTCAGGCCGCCGGAACAGGAGTCGCCGCTGGACGTC Direct Gain 0 0.966217905353773 0 0.904684364795685 prediction 0.932435810707546 Functional Gain - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38643557 chr19:38643557 nonsynonymous SNV 0.868 2 21 hm5C_associated_SNPs_130347 0 0 0 0 0 Ribosome 0 0.500231643979756 0.80936872959137 0.000463287959512559 hm5C_site_50405 DeepMRMD:0.80936872959137;iRNA_m5C:0.000463287959512559 50406 chr4 40245384 40245384 1 + C G BLCA 40245384 - 40245364 40245404 41 GCATTGACGCAGGAGGCCCTGTGGGGCCCCATCTCCCGCTG GCATTGACGCAGGAGGCCCTCTGGGGCCCCATCTCCCGCTG Direct Gain 0 0.966208450970518 0 0.88566792011261 prediction 0.932416901941035 Functional Gain - RHOH ENSG00000168421 CDS Human protein_coding chr4:40245384 chr4:40245384 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_130348 0 0 0 0 0 Cytosol 0 0.500231643921092 0.77133584022522 0.000463287842183746 hm5C_site_50406 DeepMRMD:0.77133584022522;iRNA_m5C:0.000463287842183746 50407 chr1 53308287 53308287 1 + G C rs141830470 53308287 + 53308267 53308307 41 TGGGGAGGCTGGGGAGGCGGGAGGAGAACGGTTGGCCCCGG TGGGGAGGCTGGGGAGGCGGCAGGAGAACGGTTGGCCCCGG Direct Gain 0 0.966206723221465 0 0.977558195590973 prediction 0.93241344644293 Functional Gain - ZYG11A ENSG00000203995 UTR5 Human protein_coding chr1:53308287 chr1:53308287 . . 0 21 hm5C_associated_SNPs_130349 0 0 0 0 0 chromatin 0 0.500231643921092 0.955116391181946 0.000463287842184856 hm5C_site_50407 DeepMRMD:0.955116391181946;iRNA_m5C:0.000463287842184856 50408 chr1 45974781 45974781 1 + C G MESO 45974781 - 45974761 45974801 41 GTGTGGTAAAGGGAAGGTCCGGGGAGGGAGAACTAGGCTTC GTGTGGTAAAGGGAAGGTCCCGGGAGGGAGAACTAGGCTTC Direct Gain 0 0.966183942016168 0 0.917484402656555 prediction 0.932367884032335 Functional Gain - MMACHC ENSG00000132763 CDS Human protein_coding chr1:45974781 chr1:45974781 nonsynonymous SNV 0.004 1 21 hm5C_associated_SNPs_130350 0 0 0 0 0 Cytosol 0 0.500231643921092 0.83496880531311 0.000463287842184856 hm5C_site_50408 DeepMRMD:0.83496880531311;iRNA_m5C:0.000463287842184856 50409 chr12 60179831 60179831 1 + G C rs28684576 60179831 + 60179811 60179851 41 TGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAG TGTGGTGGGGTCGGGGGAGGCGGGAGGGATAGCATTGGGAG Direct Gain 0 0.966163650077162 0 0.963217437267303 prediction 0.932327300154325 Functional Gain - SLC16A7 ENSG00000118596;ENSG00000237176 intergenic Human other chr12:60179831 chr12:60179831 . . 0 21 hm5C_associated_SNPs_130351 0 0 0 0 0 nucleus 0 0.500231643921095 0.926434874534606 0.000463287842189075 hm5C_site_50409 DeepMRMD:0.926434874534606;iRNA_m5C:0.000463287842189075 50410 chr19 11943687 11943687 1 + A C rs527740574 11943687 + 11943667 11943707 41 AATACGTGGTAGGACACACAATGGAGAGAAGCCCTATGCAT AATACGTGGTAGGACACACACTGGAGAGAAGCCCTATGCAT Direct Gain 0 0.966155969231565 0 0.748255610466003 prediction 0.93231193846313 Functional Gain - ZNF440 ENSG00000171295 CDS Human protein_coding chr19:11943687 chr19:11943687 nonsynonymous SNV 0.010 0 21 hm5C_associated_SNPs_130352 0 0 0 0 0 Nucleus 0 0.500231629530739 0.496511220932006 0.000463259061477261 hm5C_site_50410 DeepMRMD:0.496511220932006;iRNA_m5C:0.000463259061477261 50411 chr1 186276172 186276172 1 + A G UCEC 186276172 - 186276152 186276192 41 GGTAGTTGGGGCAGGCTTCTTGGGGGTGGTGGGTGCAGGCT GGTAGTTGGGGCAGGCTTCTCGGGGGTGGTGGGTGCAGGCT Direct Gain 0 0.965983244929232 0 0.990054607391357 prediction 0.931966489858464 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276172 chr1:186276172 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130353 0 0 0 0 0 nucleoplasm 0 0.500231643921111 0.980109214782714 0.000463287842222826 hm5C_site_50411 DeepMRMD:0.980109214782714;iRNA_m5C:0.000463287842222826 50412 chr5 176733523 176733523 1 + C G rs144966419 176733523 - 176733503 176733543 41 TTCTTGGTGGCCGCCTTGCTGGCGAGGTCCTTGGCCTTCTC TTCTTGGTGGCCGCCTTGCTCGCGAGGTCCTTGGCCTTCTC Direct Gain 0 0.965971312653626 0 0.927100896835327 prediction 0.931942625307253 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733523 chr5:176733523 synonymous SNV . 0 21 hm5C_associated_SNPs_130354 0 0 0 0 0 Cytosol 0 0.500231643921092 0.854201793670654 0.000463287842184856 hm5C_site_50412 DeepMRMD:0.854201793670654;iRNA_m5C:0.000463287842184856 50413 chr1 200881002 200881002 1 + T C COAD 200881002 + 200880982 200881022 41 GCGCAGCCCCGGGCCCTGCTTACGAGGAGGAGGGCACTCCC GCGCAGCCCCGGGCCCTGCTCACGAGGAGGAGGGCACTCCC Direct Gain 0 0.965970252149563 0 0.890021562576294 prediction 0.931940504299126 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200881002 chr1:200881002 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_130355 0 0 0 0 0 cytosol 0 0.500231643921092 0.780043125152588 0.000463287842184856 hm5C_site_50413 DeepMRMD:0.780043125152588;iRNA_m5C:0.000463287842184856 50414 chr12 19499994 19499994 1 + A G rs370991059 19499994 - 19499974 19500014 41 ACTGGGCAGAGGGGGGATTATGGGAGGCTGCTCTGTAAAGT ACTGGGCAGAGGGGGGATTACGGGAGGCTGCTCTGTAAAGT Direct Gain 0 0.965950751252469 0 0.882177412509918 prediction 0.931901502504938 Functional Gain - PLEKHA5 ENSG00000052126 CDS Human protein_coding chr12:19499994 chr12:19499994 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130356 0 0 0 0 0 Nucleus 0 0.500231643927411 0.764354825019836 0.000463287854822081 hm5C_site_50414 DeepMRMD:0.764354825019836;iRNA_m5C:0.000463287854822081 50415 chr16 68856056 68856056 1 + A G OV 68856056 - 68856036 68856076 41 TGCTGTGAAGGGAGATGTATTGGGAGGAAGGTCTGCATCAA TGCTGTGAAGGGAGATGTATCGGGAGGAAGGTCTGCATCAA Direct Gain 0 0.965894903291396 0 0.991005778312683 prediction 0.931789806582792 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68856056 chr16:68856056 nonsynonymous SNV 0.991 3 21 hm5C_associated_SNPs_130357 0 0 0 0 0 Nucleus 0 0.500231643921244 0.982011556625366 0.000463287842487281 hm5C_site_50415 DeepMRMD:0.982011556625366;iRNA_m5C:0.000463287842487281 50416 chr2 26410214 26410214 1 + C G rs1019972 26410214 - 26410194 26410234 41 GTGGTTGAGGGTAGGGGACCGGGGGCTGGGCGGCTAGAGGA GTGGTTGAGGGTAGGGGACCCGGGGCTGGGCGGCTAGAGGA Direct Gain 0 0.965854828538539 0 0.850002408027649 prediction 0.931709657077077 Functional Gain - GAREM2 ENSG00000157833 CDS Human protein_coding chr2:26410214 chr2:26410214 synonymous SNV . 0 21 hm5C_associated_SNPs_130358 0 0 0 0 0 Exosome 0 0.500231643921092 0.700004816055298 0.000463287842184856 hm5C_site_50416 DeepMRMD:0.700004816055298;iRNA_m5C:0.000463287842184856 50417 chr7 86415962 86415962 1 + T C HNSC 86415962 + 86415942 86415982 41 CGACGACTCGCGGGAGCTCATTGCAGCCGCCAGCCGCGCCA CGACGACTCGCGGGAGCTCACTGCAGCCGCCAGCCGCGCCA Direct Gain 0 0.965827982541722 0 0.905169606208801 prediction 0.931655965083445 Functional Gain - GRM3 ENSG00000198822 CDS Human protein_coding chr7:86415962 chr7:86415962 nonsynonymous SNV 0.916 3 21 hm5C_associated_SNPs_130359 0 0 0 0 0 Endoplasmic reticulum 0 0.500231656153474 0.810339212417602 0.000463312306947516 hm5C_site_50417 DeepMRMD:0.810339212417602;iRNA_m5C:0.000463312306947516 50418 chr3 38158095 38158095 1 + C G HNSC 38158095 - 38158075 38158115 41 CTGGAGGGGCCTGGGGACCAGAGGAGGCAGCCACCCTCAGG CTGGAGGGGCCTGGGGACCACAGGAGGCAGCCACCCTCAGG Direct Gain 0 0.965787704119 0 0.874164998531342 prediction 0.931575408238001 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38158095 chr3:38158095 synonymous SNV . 0 21 hm5C_associated_SNPs_130360 0 0 0 0 0 chromatin 0 0.500231646990137 0.748329997062684 0.000463293980274671 hm5C_site_50418 DeepMRMD:0.748329997062684;iRNA_m5C:0.000463293980274671 50419 chr21 18885390 18885390 1 + T C rs151262120 18885390 + 18885370 18885410 41 CGCGCGAGGCGCGGGGAGCCTGGGACCAGGAGCGAGAGCCG CGCGCGAGGCGCGGGGAGCCCGGGACCAGGAGCGAGAGCCG Direct Gain 0 0.965774726764511 0 0.968653798103333 prediction 0.931549453529022 Functional Gain - CXADR ENSG00000154639 UTR5 Human protein_coding chr21:18885390 chr21:18885390 . . 0 21 hm5C_associated_SNPs_130361 0 0 1 0 0 Ribosome 0 0.500231643921093 0.937307596206666 0.0004632878421853 hm5C_site_50419 DeepMRMD:0.937307596206666;iRNA_m5C:0.0004632878421853 50420 chr7 98951628 98951628 1 + T C HNSC 98951628 + 98951608 98951648 41 CAGCTGATGTCAGAGTTTGGTGGCAGTGGCACTGGTGGCTG CAGCTGATGTCAGAGTTTGGCGGCAGTGGCACTGGTGGCTG Direct Gain 0 0.965766859239683 0 0.928581237792969 prediction 0.931533718479365 Functional Gain - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98951628 chr7:98951628 synonymous SNV . 0 21 hm5C_associated_SNPs_130362 0 0 1 1 0 Cytosol 0 0.500231643921092 0.857162475585938 0.000463287842184856 hm5C_site_50420 DeepMRMD:0.857162475585938;iRNA_m5C:0.000463287842184856 50421 chr9 40715965 40715965 1 + G C CESC 40715965 + 40715945 40715985 41 GAGAAGACGTGGAGAGCTCAGAGGATGTCCCAAACAAGAGA GAGAAGACGTGGAGAGCTCACAGGATGTCCCAAACAAGAGA Direct Gain 0 0.965655915807131 0 0.827630639076233 prediction 0.931311831614261 Functional Gain - FAM74A3 ENSG00000204844 ncRNA_exonic Human other chr9:40715965 chr9:40715965 . . 0 21 hm5C_associated_SNPs_130363 0 0 0 0 0 unknown 0 0.500231643798712 0.655261278152466 0.000463287597423978 hm5C_site_50421 DeepMRMD:0.655261278152466;iRNA_m5C:0.000463287597423978 50422 chr9 137734451 137734451 1 + C G rs376087882 137734451 - 137734431 137734471 41 CAGGATGGGTCGGGCGAGCTGGGGGGCTGGAGGCATGGCCC CAGGATGGGTCGGGCGAGCTCGGGGGCTGGAGGCATGGCCC Direct Gain 0 0.965630841480837 0 0.98572564125061 prediction 0.931261682961674 Functional Gain - LOC101448202 ENSG00000130635 UTR3 Human protein_coding chr9:137734451 chr9:137734451 . . 0 21 hm5C_associated_SNPs_130364 1 0 0 0 0 unknown 0 0.500231643921092 0.97145128250122 0.000463287842184856 hm5C_site_50422 DeepMRMD:0.97145128250122;iRNA_m5C:0.000463287842184856 Ehlers-Danlos syndrome, type 7A Ehlers-Danlos syndrome, type 7A 50423 chr11 43702530 43702530 1 + A C rs56168061 43702530 + 43702510 43702550 41 GTCGGCCCGGGGCTCGGAGAATGGGCAGGTGAGTCGGATGC GTCGGCCCGGGGCTCGGAGACTGGGCAGGTGAGTCGGATGC Direct Gain 0 0.965628950038006 0 0.516914486885071 prediction 0.931257900076012 Functional Gain - HSD17B12 ENSG00000149084 CDS Human protein_coding chr11:43702530 chr11:43702530 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_130365 0 0 1 1 1 Ribosome 0 0.500231735927873 0.033828973770142 0.000463471855745468 hm5C_site_50423 DeepMRMD:0.033828973770142;iRNA_m5C:0.000463471855745468 50424 chr1 11808585 11808585 1 + C G rs577629221 11808585 - 11808565 11808605 41 AGCGGCTTGAGCAGCAAGCTGAGGATGGCCATGCCCACGCC AGCGGCTTGAGCAGCAAGCTCAGGATGGCCATGCCCACGCC Direct Gain 0 0.965603339117234 0 0.924799621105194 prediction 0.931206678234469 Functional Gain - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808585 chr1:11808585 stopgain 0.999 3 21 hm5C_associated_SNPs_130366 0 0 0 0 0 Ribosome 0 0.500231643921178 0.849599242210388 0.000463287842356941 hm5C_site_50424 DeepMRMD:0.849599242210388;iRNA_m5C:0.000463287842356941 50425 chr1 16261839 16261839 1 + C G CESC 16261839 - 16261819 16261859 41 GGTGGCTTGCCCTTGGGAATGAGGATGGCCCGGGTCCACTT GGTGGCTTGCCCTTGGGAATCAGGATGGCCCGGGTCCACTT Direct Gain 0 0.965569517978427 0 0.972321391105652 prediction 0.931139035956855 Functional Gain - SPEN ENSG00000065526 CDS Human protein_coding chr1:16261839 chr1:16261839 stopgain 0.002 0 21 hm5C_associated_SNPs_130367 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.944642782211304 0.000463287842184856 hm5C_site_50425 DeepMRMD:0.944642782211304;iRNA_m5C:0.000463287842184856 50426 chr9 137314487 137314487 1 + C G rs190716521 137314487 - 137314467 137314507 41 CCGGGGAGTGGGGAGTGTCCGGGGAGAGGGGAGTGTCCCGG CCGGGGAGTGGGGAGTGTCCCGGGAGAGGGGAGTGTCCCGG Direct Gain 0 0.965560423377121 0 0.948271572589874 prediction 0.931120846754242 Functional Gain - RXRA ENSG00000186350 intronic Human protein_coding chr9:137314487 chr9:137314487 . . 0 21 hm5C_associated_SNPs_130368 0 0 0 0 0 Cytosol 0 0.50023164392089 0.896543145179748 0.000463287841779847 hm5C_site_50426 DeepMRMD:0.896543145179748;iRNA_m5C:0.000463287841779847 50427 chr1 37948765 37948765 1 + G C rs563328219 37948765 + 37948745 37948785 41 AGCCAGATGTCGGAACTTTGGGGGGTTCGAGGAGGAGGCCC AGCCAGATGTCGGAACTTTGCGGGGTTCGAGGAGGAGGCCC Direct Gain 0 0.965525649318011 0 0.976967215538025 prediction 0.931051298636021 Functional Gain - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37948765 chr1:37948765 nonsynonymous SNV 0.926 2 21 hm5C_associated_SNPs_130369 0 0 0 0 0 Nucleus 0 0.500231643921093 0.95393443107605 0.000463287842185078 hm5C_site_50427 DeepMRMD:0.95393443107605;iRNA_m5C:0.000463287842185078 50428 chr19 51363500 51363500 1 + T C rs116064912 51363500 + 51363480 51363520 41 GGTGTGAGGTCCAGGGTTGCTAGGAAAAGAAATCAGCAGAC GGTGTGAGGTCCAGGGTTGCCAGGAAAAGAAATCAGCAGAC Direct Gain 0 0.965509480512423 0 0.924447774887085 prediction 0.931018961024847 Functional Gain - KLK3 ENSG00000142515 UTR3 Human protein_coding chr19:51363500 chr19:51363500 . . 0 21 hm5C_associated_SNPs_130370 0 0 0 1 0 Cytosol 0 0.500231643921057 0.84889554977417 0.000463287842113802 hm5C_site_50428 DeepMRMD:0.84889554977417;iRNA_m5C:0.000463287842113802 50429 chr15 24921769 24921769 1 + T C SKCM 24921769 + 24921749 24921789 41 GGCCGGATGTGCCCGGCATCTTGGAAAGCCTGATCCGGATG GGCCGGATGTGCCCGGCATCCTGGAAAGCCTGATCCGGATG Direct Gain 0 0.965508336218393 0 0.896951079368591 prediction 0.931016672436786 Functional Gain - NPAP1 ENSG00000185823 CDS Human protein_coding chr15:24921769 chr15:24921769 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_130371 0 0 0 0 0 Nucleus 0 0.500231643998914 0.793902158737182 0.000463287997827688 hm5C_site_50429 DeepMRMD:0.793902158737182;iRNA_m5C:0.000463287997827688 50430 chr12 12870888 12870888 1 + G C LUAD 12870888 + 12870868 12870908 41 TCTTCGGCCCGGTGGACCACGAAGAGTTAACCCGGGACTTG TCTTCGGCCCGGTGGACCACCAAGAGTTAACCCGGGACTTG Direct Gain 0 0.965481224406744 0 0.729166626930237 prediction 0.930962448813487 Functional Gain - CDKN1B ENSG00000111276 CDS Human protein_coding chr12:12870888 chr12:12870888 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_130372 0 0 1 0 0 Cytosol 0 0.500231643921092 0.458333253860474 0.000463287842184856 hm5C_site_50430 DeepMRMD:0.458333253860474;iRNA_m5C:0.000463287842184856 50431 chr3 4715002 4715002 1 + A G STAD 4715002 - 4714982 4715022 41 TCACGGGGGTGACTTGTTCCTGGGGATCTCGGTCCACATGC TCACGGGGGTGACTTGTTCCCGGGGATCTCGGTCCACATGC Direct Gain 0 0.965471651319719 0 0.904703080654144 prediction 0.930943302639437 Functional Gain - ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4715002 chr3:4715002 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_130373 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921086 0.809406161308288 0.000463287842171756 hm5C_site_50431 DeepMRMD:0.809406161308288;iRNA_m5C:0.000463287842171756 50432 chrX 102968656 102968656 1 + G C rs140852098 102968656 + 102968636 102968676 41 GTCCTTCCGTGGCCTACTGAGTGGATTTTCAACCCCTATCG GTCCTTCCGTGGCCTACTGACTGGATTTTCAACCCCTATCG Direct Gain 0 0.965445291920119 0 0.613115787506104 prediction 0.930890583840239 Functional Gain - TMEM31 ENSG00000179363 CDS Human protein_coding chrX:102968656 chrX:102968656 nonsynonymous SNV 0.064 0 21 hm5C_associated_SNPs_130374 0 0 0 0 0 exosome 0 0.500231643921092 0.226231575012208 0.000463287842184856 hm5C_site_50432 DeepMRMD:0.226231575012208;iRNA_m5C:0.000463287842184856 50433 chr11 199673 199673 1 + T C rs4029235 199673 + 199653 199693 41 GTGGAGGGGTGGGGTGGGGATGGGAGGCACCTGCACCCTGA GTGGAGGGGTGGGGTGGGGACGGGAGGCACCTGCACCCTGA Direct Gain 0 0.965425052254953 0 0.835922837257385 prediction 0.930850104509907 Functional Gain - ODF3 ENSG00000177947;ENSG00000177951 intronic Human other chr11:199673 chr11:199673 . . 0 21 hm5C_associated_SNPs_130375 0 0 0 0 0 exosome 0 0.500231824732209 0.67184567451477 0.00046364946441857 hm5C_site_50433 DeepMRMD:0.67184567451477;iRNA_m5C:0.00046364946441857 50434 chr6 159316291 159316291 1 + G C rs183794014 159316291 + 159316271 159316311 41 AAGAACGAGGAACACTGCCCGGGGAGTTTCTTCCTCTGCAA AAGAACGAGGAACACTGCCCCGGGAGTTTCTTCCTCTGCAA Direct Gain 0 0.965423484896507 0 0.900339841842651 prediction 0.930846969793014 Functional Gain - C6orf99 ENSG00000203711 CDS Human lincRNA chr6:159316291 chr6:159316291 synonymous SNV . 0 21 hm5C_associated_SNPs_130376 0 0 0 0 1 Cytosol 0 0.500231643921092 0.800679683685302 0.000463287842184856 hm5C_site_50434 DeepMRMD:0.800679683685302;iRNA_m5C:0.000463287842184856 50435 chr14 39650731 39650731 1 + T C PAAD 39650731 + 39650711 39650751 41 AGTAGTAGCAGTCGCAGTAGTTCCAGTAGCAGCTCCAGTAC AGTAGTAGCAGTCGCAGTAGCTCCAGTAGCAGCTCCAGTAC Direct Gain 0 0.965350610370833 0 0.95658266544342 prediction 0.930701220741666 Functional Gain - PNN ENSG00000100941 CDS Human protein_coding chr14:39650731 chr14:39650731 synonymous SNV . 0 21 hm5C_associated_SNPs_130377 0 0 1 0 0 Nucleus 0 0.500231669942654 0.91316533088684 0.000463339885308889 hm5C_site_50435 DeepMRMD:0.91316533088684;iRNA_m5C:0.000463339885308889 50436 chr10 93041999 93041999 1 + T C rs529254287 93041999 + 93041979 93042019 41 TGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGA TGCCTGTAATCCCAGCACTTCGGGAGGCCAAGGCAGGTGGA Direct Gain 0 0.965334080292915 0 0.910067915916443 prediction 0.930668160585831 Functional Gain - PCGF5 ENSG00000180628 UTR3 Human protein_coding chr10:93041999 chr10:93041999 . . 0 21 hm5C_associated_SNPs_130378 0 0 0 0 0 Cytosol 0 0.500231643920655 0.820135831832886 0.000463287841309779 hm5C_site_50436 DeepMRMD:0.820135831832886;iRNA_m5C:0.000463287841309779 50437 chr11 63449152 63449152 1 + C G BLCA 63449152 - 63449132 63449172 41 GCTCGGCTCCGAAGGACGACGAGGAGATGGAATGGGACTGA GCTCGGCTCCGAAGGACGACCAGGAGATGGAATGGGACTGA Direct Gain 0 0.965284035227236 0 0.892569303512573 prediction 0.930568070454472 Functional Gain - RTN3 ENSG00000133318 CDS Human protein_coding chr11:63449152 chr11:63449152 nonsynonymous SNV 0.987 3 21 hm5C_associated_SNPs_130379 0 0 0 0 0 Endoplasmic reticulum 0 0.500231735070029 0.785138607025146 0.000463470140057654 hm5C_site_50437 DeepMRMD:0.785138607025146;iRNA_m5C:0.000463470140057654 50438 chr19 55086249 55086249 1 + T C rs45523736 55086249 + 55086229 55086269 41 GCCCAGCCCTGTGGTGACCTTAGGAGGGAACGTGACCCTCC GCCCAGCCCTGTGGTGACCTCAGGAGGGAACGTGACCCTCC Direct Gain 0 0.96527767756868 0 0.918740630149841 prediction 0.93055535513736 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086249 chr19:55086249 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_130380 0 0 0 0 1 Cytosol 0 0.500231643921016 0.837481260299682 0.000463287842031201 hm5C_site_50438 DeepMRMD:0.837481260299682;iRNA_m5C:0.000463287842031201 50439 chr7 55955281 55955281 1 + T G rs6972914 55955281 - 55955261 55955301 41 GCCGCCGCGGTGGACCCGGGAGGGAGAAGGTGCCGAGGGCC GCCGCCGCGGTGGACCCGGGCGGGAGAAGGTGCCGAGGGCC Direct Gain 0 0.965277179060353 0 0.87831324338913 prediction 0.930554358120707 Functional Gain - ZNF713 ENSG00000178665;ENSG00000249773 UTR5 Human other chr7:55955281 chr7:55955281 . . 0 21 hm5C_associated_SNPs_130381 0 0 0 0 0 Nucleus 0 0.500231643928296 0.75662648677826 0.000463287856591332 hm5C_site_50439 DeepMRMD:0.75662648677826;iRNA_m5C:0.000463287856591332 50440 chr12 49950251 49950251 1 + C G rs113209368 49950251 - 49950231 49950271 41 GGGCCCTGGTACCTGGTCCAGGGGAGGGGCTGCTGCTACAT GGGCCCTGGTACCTGGTCCACGGGAGGGGCTGCTGCTACAT Direct Gain 0 0.965255826403148 0 0.869553208351135 prediction 0.930511652806296 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49950251 chr12:49950251 nonsynonymous SNV 0.952 3 21 hm5C_associated_SNPs_130382 0 0 0 0 0 chromatin 0 0.500231641134732 0.73910641670227 0.000463282269464349 hm5C_site_50440 DeepMRMD:0.73910641670227;iRNA_m5C:0.000463282269464349 50441 chr7 5862976 5862976 1 + T C rs541285035 5862976 + 5862956 5862996 41 CCGGCACTGCACTGGGGTTCTTGGGGGCGGCTCCTCCAGAC CCGGCACTGCACTGGGGTTCCTGGGGGCGGCTCCTCCAGAC Direct Gain 0 0.9651832385158 0 0.866069197654724 prediction 0.9303664770316 Functional Gain - ZNF815P ENSG00000235944 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5862976 chr7:5862976 . . 0 21 hm5C_associated_SNPs_130383 0 0 0 0 0 unknown 0 0.500231643921475 0.732138395309448 0.0004632878429498 hm5C_site_50441 DeepMRMD:0.732138395309448;iRNA_m5C:0.0004632878429498 50442 chr7 6189714 6189714 1 + T C COAD 6189714 + 6189694 6189734 41 GGCAAGGAGAATGGGATTGGTACGATTGTGAGCTCCCACTC GGCAAGGAGAATGGGATTGGCACGATTGTGAGCTCCCACTC Direct Gain 0 0.96517616158386 0 0.746097803115845 prediction 0.93035232316772 Functional Gain - USP42 ENSG00000106346 CDS Human protein_coding chr7:6189714 chr7:6189714 synonymous SNV . 0 21 hm5C_associated_SNPs_130384 0 0 0 0 0 Ribosome 0 0.500231643468674 0.49219560623169 0.00046328693734865 hm5C_site_50442 DeepMRMD:0.49219560623169;iRNA_m5C:0.00046328693734865 50443 chrX 118377149 118377149 1 + G C rs202113314 118377149 + 118377129 118377169 41 TGGGCAAACTGCTGAAGGAGGGGGAGGAGCCCACTGTGTAC TGGGCAAACTGCTGAAGGAGCGGGAGGAGCCCACTGTGTAC Direct Gain 0 0.965166414486239 0 0.858601212501526 prediction 0.930332828972478 Functional Gain - PGRMC1 ENSG00000101856 CDS Human protein_coding chrX:118377149 chrX:118377149 nonsynonymous SNV 0.991 4 21 hm5C_associated_SNPs_130385 0 0 1 0 1 Ribosome 0 0.500231643921108 0.717202425003052 0.000463287842216831 hm5C_site_50443 DeepMRMD:0.717202425003052;iRNA_m5C:0.000463287842216831 50444 chr14 23315054 23315054 1 + G C LUAD 23315054 + 23315034 23315074 41 GCCGGCCGGATGAGGGGACTGAGGAGGAGACGGAGGTGATC GCCGGCCGGATGAGGGGACTCAGGAGGAGACGGAGGTGATC Direct Gain 0 0.9650974869863 0 0.92896044254303 prediction 0.930194973972601 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23315054 chr14:23315054 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130386 0 0 1 0 0 cytosol 0 0.500231642328224 0.85792088508606 0.000463284656447849 hm5C_site_50444 DeepMRMD:0.85792088508606;iRNA_m5C:0.000463284656447849 50445 chr5 1242943 1242943 1 + C G STAD 1242943 - 1242923 1242963 41 TTCCAGGAGGCAGGCCTTCAGGGGGAGCTGGGCCACCCTCT TTCCAGGAGGCAGGCCTTCACGGGGAGCTGGGCCACCCTCT Direct Gain 0 0.965077482794111 0 0.962128400802612 prediction 0.930154965588222 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1242943 chr5:1242943 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_130387 0 0 0 0 0 unknown 0 0.500231643921092 0.924256801605224 0.000463287842184856 hm5C_site_50445 DeepMRMD:0.924256801605224;iRNA_m5C:0.000463287842184856 50446 chr6 42984935 42984935 1 + T C UCEC 42984935 + 42984915 42984955 41 ACCAGTGGCCCAGGGGATGTTACGGTGGACAGTGCACCTGG ACCAGTGGCCCAGGGGATGTCACGGTGGACAGTGCACCTGG Direct Gain 0 0.965036742339864 0 0.794003367424011 prediction 0.930073484679729 Functional Gain - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42984935 chr6:42984935 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130388 0 0 1 0 1 Ribosome 0 0.500241595366953 0.588006734848022 0.00048319073390668 hm5C_site_50446 DeepMRMD:0.588006734848022;iRNA_m5C:0.00048319073390668 50447 chr1 152882831 152882831 1 + A G rs372740691 152882831 - 152882811 152882851 41 AGCTGCCCCTCCTGCTGCTCTGGGAGCTCCAGCTGCCCCTC AGCTGCCCCTCCTGCTGCTCCGGGAGCTCCAGCTGCCCCTC Direct Gain 0 0.964984086250049 0 0.913867831230164 prediction 0.929968172500099 Functional Gain - IVL ENSG00000163207 CDS Human protein_coding chr1:152882831 chr1:152882831 synonymous SNV . 0 21 hm5C_associated_SNPs_130389 0 0 0 0 0 unknown 0 0.500231643921092 0.827735662460328 0.000463287842184856 hm5C_site_50447 DeepMRMD:0.827735662460328;iRNA_m5C:0.000463287842184856 50448 chr19 55086858 55086858 1 + T G rs552568740 55086858 - 55086838 55086878 41 GCTGCCAACCAGGGCGCTGGAGGAAGTCACGTTCTCCCTCC GCTGCCAACCAGGGCGCTGGCGGAAGTCACGTTCTCCCTCC Direct Gain 0 0.964973735571955 0 0.904101610183716 prediction 0.929947471143909 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086858 chr19:55086858 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130390 0 0 0 0 0 Cytosol 0 0.500231643921092 0.808203220367432 0.000463287842184856 hm5C_site_50448 DeepMRMD:0.808203220367432;iRNA_m5C:0.000463287842184856 50449 chr5 140048717 140048717 1 + T C UCEC 140048717 + 140048697 140048737 41 GGTACCATCTACCTCTTCAATTGGAATGGCTTTGGGGCCAC GGTACCATCTACCTCTTCAACTGGAATGGCTTTGGGGCCAC Direct Gain 0 0.964972379158092 0 0.840711116790771 prediction 0.929944758316184 Functional Gain - WDR55 ENSG00000120314 CDS Human protein_coding chr5:140048717 chr5:140048717 synonymous SNV . 0 21 hm5C_associated_SNPs_130391 0 0 1 0 1 Ribosome 0 0.500231643921092 0.681422233581542 0.000463287842184856 hm5C_site_50449 DeepMRMD:0.681422233581542;iRNA_m5C:0.000463287842184856 50450 chr17 40811437 40811437 1 + A G rs541072057 40811437 - 40811417 40811457 41 GCAGCCAGGAGCGCAGGACGTGGGGAGCGCGCGCTCTCTTC GCAGCCAGGAGCGCAGGACGCGGGGAGCGCGCGCTCTCTTC Direct Gain 0 0.964946613362761 0 0.946880340576172 prediction 0.929893226725523 Functional Gain - TUBG2 ENSG00000037042 UTR5 Human protein_coding chr17:40811437 chr17:40811437 . . 0 21 hm5C_associated_SNPs_130392 0 0 0 0 0 Cytosol 0 0.500231643921265 0.893760681152344 0.000463287842529914 hm5C_site_50450 DeepMRMD:0.893760681152344;iRNA_m5C:0.000463287842529914 50451 chr11 74952827 74952827 1 + C G rs538289769 74952827 - 74952807 74952847 41 GTTGCGCAGCCAGGCCAGCAGGGGGCGTGCGGCACAGCCGC GTTGCGCAGCCAGGCCAGCACGGGGCGTGCGGCACAGCCGC Direct Gain 0 0.964927751475395 0 0.935228884220123 prediction 0.929855502950791 Functional Gain - TPBGL ENSG00000261594 CDS Human protein_coding chr11:74952827 chr11:74952827 nonsynonymous SNV 0.986 0 21 hm5C_associated_SNPs_130393 0 0 0 0 0 exosome 0 0.500231643921512 0.870457768440246 0.000463287843024851 hm5C_site_50451 DeepMRMD:0.870457768440246;iRNA_m5C:0.000463287843024851 50452 chr3 57542199 57542199 1 + G C rs61747701 57542199 + 57542179 57542219 41 GAAGCGGGGAGCCAGACAGCGGCGGGAGCGATGGAGCGCGC GAAGCGGGGAGCCAGACAGCCGCGGGAGCGATGGAGCGCGC Direct Gain 0 0.96492062696975 0 0.691857635974884 prediction 0.9298412539395 Functional Gain - PDE12 ENSG00000174840 CDS Human protein_coding chr3:57542199 chr3:57542199 synonymous SNV . 0 21 hm5C_associated_SNPs_130394 0 0 1 0 0 Endoplasmic reticulum 0 0.500231575145411 0.383715271949768 0.000463150290822334 hm5C_site_50452 DeepMRMD:0.383715271949768;iRNA_m5C:0.000463150290822334 50453 chr4 153896268 153896268 1 + G C BLCA 153896268 + 153896248 153896288 41 CTCAGGCCTCGGGGGGCCAGGAGGAGGCCCCCAACCCACCC CTCAGGCCTCGGGGGGCCAGCAGGAGGCCCCCAACCCACCC Direct Gain 0 0.964892409494468 0 0.921714544296265 prediction 0.929784818988936 Functional Gain - FHDC1 ENSG00000137460 CDS Human protein_coding chr4:153896268 chr4:153896268 nonsynonymous SNV 0.014 0 21 hm5C_associated_SNPs_130395 0 0 0 0 0 Nucleus 0 0.500231643921091 0.84342908859253 0.000463287842181526 hm5C_site_50453 DeepMRMD:0.84342908859253;iRNA_m5C:0.000463287842181526 50454 chr1 24995948 24995948 1 + C G HNSC 24995948 - 24995928 24995968 41 TGGAGGACTTGAGGAGGTCTGAGGAGCTCGAGGCCGTGGTG TGGAGGACTTGAGGAGGTCTCAGGAGCTCGAGGCCGTGGTG Direct Gain 0 0.964870863096875 0 0.96209454536438 prediction 0.92974172619375 Functional Gain - SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24995948 chr1:24995948 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130396 0 0 0 0 0 Cytosol 0 0.500231643921819 0.92418909072876 0.00046328784363725 hm5C_site_50454 DeepMRMD:0.92418909072876;iRNA_m5C:0.00046328784363725 50455 chr5 139494400 139494400 1 + G C CESC 139494400 + 139494380 139494420 41 TCATCGACGACTACGGAGTGGAGGAGGAGCCGGCCGAGCTG TCATCGACGACTACGGAGTGCAGGAGGAGCCGGCCGAGCTG Direct Gain 0 0.964858051590175 0 0.540230274200439 prediction 0.92971610318035 Functional Gain - PURA ENSG00000185129 CDS Human protein_coding chr5:139494400 chr5:139494400 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130397 0 0 1 0 0 Ribosome 0 0.500231629513895 0.080460548400878 0.000463259027790208 hm5C_site_50455 DeepMRMD:0.080460548400878;iRNA_m5C:0.000463259027790208 50456 chr16 58550386 58550386 1 + G C CESC 58550386 + 58550366 58550406 41 GTGGGTGTCCCTGCAGGCCAGAGGAGGAGCGCCGGTGCCTG GTGGGTGTCCCTGCAGGCCACAGGAGGAGCGCCGGTGCCTG Direct Gain 0 0.964830922861574 0 0.87308669090271 prediction 0.929661845723148 Functional Gain - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58550386 chr16:58550386 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_130398 0 0 1 0 1 Ribosome 0 0.500231643921095 0.74617338180542 0.000463287842189297 hm5C_site_50456 DeepMRMD:0.74617338180542;iRNA_m5C:0.000463287842189297 50457 chr5 36152994 36152994 1 + G C LUAD 36152994 + 36152974 36153014 41 GGGTCTCCGCCCTGGAGAAAGAGGAGCCCGACAGTGAGAAC GGGTCTCCGCCCTGGAGAAACAGGAGCCCGACAGTGAGAAC Direct Gain 0 0.964791364046496 0 0.872489094734192 prediction 0.929582728092991 Functional Gain - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36152994 chr5:36152994 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130399 0 0 1 0 0 Cytosol 0 0.500231676053759 0.744978189468384 0.000463352107518133 hm5C_site_50457 DeepMRMD:0.744978189468384;iRNA_m5C:0.000463352107518133 50458 chr5 435416 435416 1 + A G rs10428562 435416 - 435396 435436 41 GCTGGGAGCTGCAGGTGGCCTGGGAGGGCTGAGCTAGGTGT GCTGGGAGCTGCAGGTGGCCCGGGAGGGCTGAGCTAGGTGT Direct Gain 0 0.964786129184257 0 0.884819507598877 prediction 0.929572258368515 Functional Gain - AHRR ENSG00000063438 UTR3 Human protein_coding chr5:435416 chr5:435416 . . 0 21 hm5C_associated_SNPs_130400 0 0 0 0 0 chromatin 0 0.500231643921092 0.769639015197754 0.000463287842184856 hm5C_site_50458 DeepMRMD:0.769639015197754;iRNA_m5C:0.000463287842184856 50459 chr17 45401335 45401335 1 + T C rs118099962 45401335 + 45401315 45401355 41 GGCCGCGCGGCGCGGGATCCTGGGAAGGCTGCAGAGCTAGA GGCCGCGCGGCGCGGGATCCCGGGAAGGCTGCAGAGCTAGA Direct Gain 0 0.964777449481728 0 0.859310507774353 prediction 0.929554898963456 Functional Gain - EFCAB13 ENSG00000178852;ENSG00000259207;ENSG00000259753 intronic Human other chr17:45401335 chr17:45401335 . . 0 21 hm5C_associated_SNPs_130401 0 0 0 0 0 Nucleus 0 0.500231643921097 0.718621015548706 0.000463287842193294 hm5C_site_50459 DeepMRMD:0.718621015548706;iRNA_m5C:0.000463287842193294 50460 chr6 36654231 36654231 1 + G C rs184742749 36654231 + 36654211 36654251 41 AGGGGGAAGGTGGGGTCCTGGAGCAGACCACCCCGCCTGCC AGGGGGAAGGTGGGGTCCTGCAGCAGACCACCCCGCCTGCC Direct Gain 0 0.964767112934684 0 0.875304102897644 prediction 0.929534225869368 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36654231 chr6:36654231 . . 0 21 hm5C_associated_SNPs_130402 0 0 1 0 0 Cytosol 0 0.500231643921092 0.750608205795288 0.000463287842184856 hm5C_site_50460 DeepMRMD:0.750608205795288;iRNA_m5C:0.000463287842184856 50461 chr10 18289671 18289671 1 + T C LUAD 18289671 + 18289651 18289691 41 TTTTGCAGATGGCCTAGCCATAGGAGCAGCCTTCTCATCAT TTTTGCAGATGGCCTAGCCACAGGAGCAGCCTTCTCATCAT Direct Gain 0 0.96475614628252 0 0.740209102630615 prediction 0.929512292565039 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18289671 chr10:18289671 nonsynonymous SNV 0.959 3 21 hm5C_associated_SNPs_130403 0 0 0 0 2 exosome 0 0.500231643921094 0.48041820526123 0.000463287842187965 hm5C_site_50461 DeepMRMD:0.48041820526123;iRNA_m5C:0.000463287842187965 50462 chr10 96701769 96701769 1 + G C SKCM 96701769 + 96701749 96701789 41 ACTGGCTGAAAGAGCTAACAGAGGATTTGGTAGGTGTGCAT ACTGGCTGAAAGAGCTAACACAGGATTTGGTAGGTGTGCAT Direct Gain 0 0.964752022152724 0 0.63357400894165 prediction 0.929504044305448 Functional Gain - CYP2C9 ENSG00000138109 CDS Human protein_coding chr10:96701769 chr10:96701769 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_130404 0 0 0 0 1 cytosol 0 0.500242016686063 0.2671480178833 0.000484033372125436 hm5C_site_50462 DeepMRMD:0.2671480178833;iRNA_m5C:0.000484033372125436 50463 chr7 142494265 142494265 1 + T C HNSC 142494265 + 142494245 142494285 41 GAACACCGGGGAGCTGTTTTTTGGAGAAGGCTCTAGGCTGA GAACACCGGGGAGCTGTTTTCTGGAGAAGGCTCTAGGCTGA Direct Gain 0 0.964751370669037 0 0.934998452663422 prediction 0.929502741338074 Functional Gain - PRSS3P2;EPHB6 ENSG00000211765 CDS Human TR_J_gene chr7:142494265 chr7:142494265 unknown . 0 21 hm5C_associated_SNPs_130405 0 0 0 0 0 unknown 0 0.500231646786612 0.869996905326844 0.000463293573224721 hm5C_site_50463 DeepMRMD:0.869996905326844;iRNA_m5C:0.000463293573224721 50464 chr10 127408404 127408404 1 + G C HNSC 127408404 + 127408384 127408424 41 ATGCCAAGGAGGCCGGAGCCGAGGGTCCGCCGGCCGGGGCC ATGCCAAGGAGGCCGGAGCCCAGGGTCCGCCGGCCGGGGCC Direct Gain 0 0.964735464866142 0 0.879686653614044 prediction 0.929470929732285 Functional Gain - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127408404 chr10:127408404 nonsynonymous SNV 0.739 1 21 hm5C_associated_SNPs_130406 0 0 1 0 1 Cytosol 0 0.500231643920654 0.759373307228088 0.000463287841308668 hm5C_site_50464 DeepMRMD:0.759373307228088;iRNA_m5C:0.000463287841308668 50465 chr15 74428932 74428932 1 + G C rs555219121 74428932 + 74428912 74428952 41 ATGGGCGGGGAGGGAGGGAAGGGGAGGGGCGCGGCGCGGCG ATGGGCGGGGAGGGAGGGAACGGGAGGGGCGCGGCGCGGCG Direct Gain 0 0.964717727195101 0 0.848170518875122 prediction 0.929435454390202 Functional Gain - ISLR2 ENSG00000167178 UTR3 Human protein_coding chr15:74428932 chr15:74428932 . . 0 21 hm5C_associated_SNPs_130407 0 0 0 0 0 Nucleus 0 0.500231643921092 0.696341037750244 0.000463287842184856 hm5C_site_50465 DeepMRMD:0.696341037750244;iRNA_m5C:0.000463287842184856 50466 chr3 171576953 171576953 1 + T C rs187500490 171576953 + 171576933 171576973 41 CCTTTCAGTGGGTGGGAGGCTGGGGGAGGGATAGCATTAGG CCTTTCAGTGGGTGGGAGGCCGGGGGAGGGATAGCATTAGG Direct Gain 0 0.96469889489876 0 0.847764253616333 prediction 0.929397789797519 Functional Gain - TMEM212 ENSG00000186329 UTR3 Human protein_coding chr3:171576953 chr3:171576953 . . 0 21 hm5C_associated_SNPs_130408 0 0 0 1 0 unknown 0 0.500231643921092 0.695528507232666 0.000463287842184856 hm5C_site_50466 DeepMRMD:0.695528507232666;iRNA_m5C:0.000463287842184856 50467 chr8 104388110 104388110 1 + G C BLCA 104388110 + 104388090 104388130 41 AATGTCTGAGGGAAAGCTTTGAGGAGTCCTGGACACCCAAC AATGTCTGAGGGAAAGCTTTCAGGAGTCCTGGACACCCAAC Direct Gain 0 0.964696408245544 0 0.962681472301483 prediction 0.929392816491088 Functional Gain - CTHRC1 ENSG00000164932 CDS Human protein_coding chr8:104388110 chr8:104388110 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130409 0 0 0 0 1 nucleus 0 0.500231644536372 0.925362944602966 0.000463289072744288 hm5C_site_50467 DeepMRMD:0.925362944602966;iRNA_m5C:0.000463289072744288 50468 chr1 154401816 154401816 1 + T C STAD 154401816 + 154401796 154401836 41 CCCCAGCAGATGGGCTGGCATGGGAAGGAGGCTGCTGCTGA CCCCAGCAGATGGGCTGGCACGGGAAGGAGGCTGCTGCTGA Direct Gain 0 0.964694258346213 0 0.897435247898102 prediction 0.929388516692427 Functional Gain - IL6R ENSG00000160712 CDS Human protein_coding chr1:154401816 chr1:154401816 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130410 0 0 0 0 0 Cytosol 0 0.50023164285639 0.794870495796204 0.000463285712779093 hm5C_site_50468 DeepMRMD:0.794870495796204;iRNA_m5C:0.000463285712779093 50469 chr15 75503126 75503126 1 + C G LUSC 75503126 - 75503106 75503146 41 CTCTGGCCACAGTGGGCTCTGAGGAGGACACAGCTCCAGCC CTCTGGCCACAGTGGGCTCTCAGGAGGACACAGCTCCAGCC Direct Gain 0 0.964687796352543 0 0.972833037376404 prediction 0.929375592705085 Functional Gain - C15orf39 ENSG00000167173 CDS Human protein_coding chr15:75503126 chr15:75503126 stopgain 0.774 0 21 hm5C_associated_SNPs_130411 0 0 0 0 0 Cytosol 0 0.500231643921092 0.945666074752808 0.000463287842184856 hm5C_site_50469 DeepMRMD:0.945666074752808;iRNA_m5C:0.000463287842184856 50470 chr20 1276949 1276949 1 + A G UCEC 1276949 - 1276929 1276969 41 GCTGAGGAGAGAGGGCGGGTTGGGGGGCCCGCAGAAAGGGC GCTGAGGAGAGAGGGCGGGTCGGGGGGCCCGCAGAAAGGGC Direct Gain 0 0.964593140467486 0 0.782223105430603 prediction 0.929186280934971 Functional Gain - SNPH ENSG00000101298 CDS Human protein_coding chr20:1276949 chr20:1276949 synonymous SNV . 0 21 hm5C_associated_SNPs_130412 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.564446210861206 0.000463287842184856 hm5C_site_50470 DeepMRMD:0.564446210861206;iRNA_m5C:0.000463287842184856 50471 chr1 79120789 79120789 1 + T C LUSC 79120789 + 79120769 79120809 41 ATTCTGCTGCTGGGTCCAATTGGAGCTGGGAAGTCCAGCTT ATTCTGCTGCTGGGTCCAATCGGAGCTGGGAAGTCCAGCTT Direct Gain 0 0.964591913706947 0 0.8799968957901 prediction 0.929183827413894 Functional Gain - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79120789 chr1:79120789 synonymous SNV . 0 21 hm5C_associated_SNPs_130413 0 0 0 0 1 exosome 0 0.500231620226559 0.7599937915802 0.000463240453117297 hm5C_site_50471 DeepMRMD:0.7599937915802;iRNA_m5C:0.000463240453117297 50472 chr9 101818583 101818583 1 + A G UCEC 101818583 - 101818563 101818603 41 CCAGGCAGACCAGGAGCACCTGGGGGTCCTTGGGGCCCAAC CCAGGCAGACCAGGAGCACCCGGGGGTCCTTGGGGCCCAAC Direct Gain 0 0.964589134951092 0 0.925437450408936 prediction 0.929178269902184 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101818583 chr9:101818583 synonymous SNV . 0 21 hm5C_associated_SNPs_130414 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.850874900817872 0.000463287842184856 hm5C_site_50472 DeepMRMD:0.850874900817872;iRNA_m5C:0.000463287842184856 50473 chr8 66605949 66605949 1 + T C SARC 66605949 + 66605929 66605969 41 AGTGGCGTCTTTTGCTGATGTTGGATGGGTAGCCAAAGAAG AGTGGCGTCTTTTGCTGATGCTGGATGGGTAGCCAAAGAAG Direct Gain 0 0.96458883424238 0 0.871254324913025 prediction 0.929177668484759 Functional Gain - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66605949 chr8:66605949 nonsynonymous SNV 0.981 3 21 hm5C_associated_SNPs_130415 0 0 1 0 2 Cytosol 0 0.500231643921097 0.74250864982605 0.000463287842194626 hm5C_site_50473 DeepMRMD:0.74250864982605;iRNA_m5C:0.000463287842194626 50474 chr1 4772615 4772615 1 + A G UCEC 4772615 - 4772595 4772635 41 CCCCTTAGTCTGCAGCGTCATGGGGGTGGCCGTGGTGGTGG CCCCTTAGTCTGCAGCGTCACGGGGGTGGCCGTGGTGGTGG Direct Gain 0 0.96453626862559 0 0.792236328125 prediction 0.92907253725118 Functional Gain - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4772615 chr1:4772615 nonsynonymous SNV 0.933 1 21 hm5C_associated_SNPs_130416 0 0 0 0 0 exosome 0 0.500231643921134 0.58447265625 0.000463287842268567 hm5C_site_50474 DeepMRMD:0.58447265625;iRNA_m5C:0.000463287842268567 50475 chr1 84945092 84945092 1 + C G UCEC 84945092 - 84945072 84945112 41 GCGGAAAGGCAGCCGCTTTCGGGGGTTGGACCCCGTTTTCC GCGGAAAGGCAGCCGCTTTCCGGGGTTGGACCCCGTTTTCC Direct Gain 0 0.964533453319509 0 0.98463499546051 prediction 0.929066906639017 Functional Gain - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84945092 chr1:84945092 nonsynonymous SNV 0.540 1 21 hm5C_associated_SNPs_130417 0 0 0 0 0 Ribosome 0 0.500231643921092 0.96926999092102 0.000463287842184856 hm5C_site_50475 DeepMRMD:0.96926999092102;iRNA_m5C:0.000463287842184856 50476 chr12 27953597 27953597 1 + T C rs1129800 27953597 + 27953577 27953617 41 GTTGCAGTGAGCCGAGATTGTGCCATTGCACTCCAGCCTGG GTTGCAGTGAGCCGAGATTGCGCCATTGCACTCCAGCCTGG Direct Gain 0 0.964529221862566 0 0.554796814918518 prediction 0.929058443725133 Functional Gain - KLHL42 ENSG00000256512 ncRNA_intronic Human antisense chr12:27953597 chr12:27953597 . . 0 21 hm5C_associated_SNPs_130418 0 0 1 0 0 Ribosome 0 0.499669410932787 0.109593629837036 0 hm5C_site_50476 DeepMRMD:0.109593629837036;iRNA_m5C:0 50477 chr1 32671564 32671564 1 + G C rs116496201 32671564 + 32671544 32671584 41 GGAAACGGGAAGAGCCTTAAGGCGAGGAGGGGCATCCAGTC GGAAACGGGAAGAGCCTTAACGCGAGGAGGGGCATCCAGTC Direct Gain 0 0.964528669772505 0 0.886317133903503 prediction 0.929057339545009 Functional Gain - IQCC ENSG00000160051 CDS Human protein_coding chr1:32671564 chr1:32671564 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_130419 0 0 0 0 0 chromatin 0 0.500231643921092 0.772634267807006 0.000463287842184856 hm5C_site_50477 DeepMRMD:0.772634267807006;iRNA_m5C:0.000463287842184856 50478 chr2 112812884 112812884 1 + C G rs192143491 112812884 - 112812864 112812904 41 TGTGGAGTTGGCGGCGAGACGTGGAGGCTGGGCTCAGGGCC TGTGGAGTTGGCGGCGAGACCTGGAGGCTGGGCTCAGGGCC Direct Gain 0 0.964448587904958 0 0.906254470348358 prediction 0.928897175809916 Functional Gain - TMEM87B ENSG00000153214 UTR5 Human protein_coding chr2:112812884 chr2:112812884 . . 0 21 hm5C_associated_SNPs_130420 0 0 0 0 0 Endoplasmic reticulum 0 0.500231600171766 0.812508940696716 0.000463200343532311 hm5C_site_50478 DeepMRMD:0.812508940696716;iRNA_m5C:0.000463200343532311 50479 chr16 28841315 28841315 1 + G C BLCA 28841315 + 28841295 28841335 41 ACGACGATGGGCGCACTGAAGAGGAGAAGCACAGTGCAGTC ACGACGATGGGCGCACTGAACAGGAGAAGCACAGTGCAGTC Direct Gain 0 0.964443920439848 0 0.897078156471252 prediction 0.928887840879696 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28841315 chr16:28841315 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_130421 0 0 1 0 1 Cytosol 0 0.50023164403184 0.794156312942504 0.000463288063679457 hm5C_site_50479 DeepMRMD:0.794156312942504;iRNA_m5C:0.000463288063679457 50480 chr1 22964209 22964209 1 + G C UCEC 22964209 + 22964189 22964229 41 GAGCACCAGACGGGAAGAAAGGGGAGGCAGGAAGACCTGGC GAGCACCAGACGGGAAGAAACGGGAGGCAGGAAGACCTGGC Direct Gain 0 0.964414944567763 0 0.866998910903931 prediction 0.928829889135526 Functional Gain - C1QA ENSG00000173372 CDS Human protein_coding chr1:22964209 chr1:22964209 nonsynonymous SNV 0.004 4 21 hm5C_associated_SNPs_130422 0 0 0 0 1 exosome 0 0.500231643921092 0.733997821807862 0.000463287842184856 hm5C_site_50480 DeepMRMD:0.733997821807862;iRNA_m5C:0.000463287842184856 50481 chr11 71276965 71276965 1 + A C LUAD 71276965 + 71276945 71276985 41 TGGTTCTTGTGGGGGCTCCAAGGGGGGCTGTGGCTCCTGTG TGGTTCTTGTGGGGGCTCCACGGGGGGCTGTGGCTCCTGTG Direct Gain 0 0.964401180516359 0 0.944408297538757 prediction 0.928802361032719 Functional Gain - KRTAP5-10 ENSG00000204572 CDS Human protein_coding chr11:71276965 chr11:71276965 nonsynonymous SNV 0.039 0 21 hm5C_associated_SNPs_130423 0 0 0 0 0 unknown 0 0.500231643923635 0.888816595077514 0.000463287847270566 hm5C_site_50481 DeepMRMD:0.888816595077514;iRNA_m5C:0.000463287847270566 50482 chr4 134073342 134073342 1 + G C LUAD 134073342 + 134073322 134073362 41 TTCAGCTGGTGGATGGCGCCGTGGAGCCCCAGGGCGGGGGC TTCAGCTGGTGGATGGCGCCCTGGAGCCCCAGGGCGGGGGC Direct Gain 0 0.96438281831895 0 0.819515585899353 prediction 0.928765636637901 Functional Gain - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134073342 chr4:134073342 nonsynonymous SNV 0.941 0 21 hm5C_associated_SNPs_130424 0 0 0 0 0 cytosol 0 0.500231643779402 0.639031171798706 0.000463287558803094 hm5C_site_50482 DeepMRMD:0.639031171798706;iRNA_m5C:0.000463287558803094 50483 chr15 69452974 69452974 1 + A G rs145699750 69452974 - 69452954 69452994 41 TCGGCAAGGAAGCGCTTGTGTGAGGAGAGCCCTCCCGCTCC TCGGCAAGGAAGCGCTTGTGCGAGGAGAGCCCTCCCGCTCC Direct Gain 0 0.964312103334707 0 0.856635987758636 prediction 0.928624206669414 Functional Gain - MIR548H4 ENSG00000138604 UTR5 Human protein_coding chr15:69452974 chr15:69452974 . . 0 21 hm5C_associated_SNPs_130425 0 0 0 0 0 unknown 0 0.500231643921092 0.713271975517272 0.000463287842184856 hm5C_site_50483 DeepMRMD:0.713271975517272;iRNA_m5C:0.000463287842184856 50484 chr2 61248598 61248598 1 + G C rs551373475 61248598 + 61248578 61248618 41 GCGAGGCAGCAGCCTGGCAGGGGGAGGGGAATCCACCATTG GCGAGGCAGCAGCCTGGCAGCGGGAGGGGAATCCACCATTG Direct Gain 0 0.964260347517445 0 0.889270007610321 prediction 0.928520695034889 Functional Gain - PEX13 ENSG00000162928 intronic Human protein_coding chr2:61248598 chr2:61248598 . . 0 21 hm5C_associated_SNPs_130426 0 0 1 0 0 Ribosome 0 0.500231643921022 0.778540015220642 0.000463287842043636 hm5C_site_50484 DeepMRMD:0.778540015220642;iRNA_m5C:0.000463287842043636 50485 chr11 16778212 16778212 1 + T C rs190401167 16778212 + 16778192 16778232 41 ACACCTATAATCCCAGCACTTTGGGAGGCCGAGGTGGCTGG ACACCTATAATCCCAGCACTCTGGGAGGCCGAGGTGGCTGG Direct Gain 0 0.964242204244951 0 0.963797807693481 prediction 0.928484408489902 Functional Gain - C11orf58 ENSG00000110696 downstream Human protein_coding chr11:16778212 chr11:16778212 . . 0 21 hm5C_associated_SNPs_130427 0 0 0 0 0 Ribosome 0 0.500231643921176 0.927595615386962 0.000463287842352278 hm5C_site_50485 DeepMRMD:0.927595615386962;iRNA_m5C:0.000463287842352278 50486 chr6 142541553 142541553 1 + T C rs12665758 142541553 + 142541533 142541573 41 ATAGAGGGAAGGAGACAATATAGAAACTACGGAGTCCGCTG ATAGAGGGAAGGAGACAATACAGAAACTACGGAGTCCGCTG Direct Gain 0 0.964237916940184 0 0.673034012317657 prediction 0.928475833880369 Functional Gain - VTA1 ENSG00000009844 UTR3 Human protein_coding chr6:142541553 chr6:142541553 . . 0 21 hm5C_associated_SNPs_130428 0 0 1 0 0 Ribosome 0 0.500231643921092 0.346068024635314 0.000463287842184856 hm5C_site_50486 DeepMRMD:0.346068024635314;iRNA_m5C:0.000463287842184856 50487 chrX 53223699 53223699 1 + G C LUAD 53223699 + 53223679 53223719 41 GGATTGGGCCTCGGAGAGCTGAGGAGGCGAGGCACTGACAC GGATTGGGCCTCGGAGAGCTCAGGAGGCGAGGCACTGACAC Direct Gain 0 0.964237277093975 0 0.93819785118103 prediction 0.92847455418795 Functional Gain - KDM5C ENSG00000126012 CDS Human protein_coding chrX:53223699 chrX:53223699 synonymous SNV . 0 21 hm5C_associated_SNPs_130429 0 0 0 0 1 Nucleus 0 0.500231643861645 0.87639570236206 0.000463287723290406 hm5C_site_50487 DeepMRMD:0.87639570236206;iRNA_m5C:0.000463287723290406 50488 chr18 29056863 29056863 1 + A C rs189388599 29056863 + 29056843 29056883 41 ACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCAC ACCCGGGAAGCGGAGCTTGCCGTGAGCCGAGATTGCGCCAC Direct Gain 0 0.964224911095948 0 0.420261055231094 prediction 0.928449822191895 Functional Gain - DSG3 ENSG00000134757 UTR3 Human protein_coding chr18:29056863 chr18:29056863 . . 0 21 hm5C_associated_SNPs_130430 0 0 0 0 0 Nucleus 0 0.500231502199994 0 0.00046300439998781 hm5C_site_50488 DeepMRMD:0;iRNA_m5C:0.00046300439998781 50489 chr22 42422962 42422962 1 + T C HNSC 42422962 + 42422942 42422982 41 AGGATATGGAGCCCCACCTCTAGGATATGGAGCCCCACCTC AGGATATGGAGCCCCACCTCCAGGATATGGAGCCCCACCTC Direct Gain 0 0.964202285667527 0 0.949050784111023 prediction 0.928404571335055 Functional Gain - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42422962 chr22:42422962 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130431 0 0 0 0 0 exosome 0 0.500231643921092 0.898101568222046 0.000463287842184856 hm5C_site_50489 DeepMRMD:0.898101568222046;iRNA_m5C:0.000463287842184856 50490 chr6 33639885 33639885 1 + C G BRCA 33639885 - 33639865 33639905 41 GCAGACAGGCTGGGGGCACTGAAGACGGACTGCTTGCGGCT GCAGACAGGCTGGGGGCACTCAAGACGGACTGCTTGCGGCT Direct Gain 0 0.964199326480433 0 0.922970652580261 prediction 0.928398652960865 Functional Gain - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33639885 chr6:33639885 nonsynonymous SNV 0.838 2 21 hm5C_associated_SNPs_130432 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643919796 0.845941305160522 0.000463287839592486 hm5C_site_50490 DeepMRMD:0.845941305160522;iRNA_m5C:0.000463287839592486 50491 chr10 64893094 64893094 1 + T G rs189294313 64893094 - 64893074 64893114 41 AGAGCCAGCGATAGGCGCTGAAGGAGCAACAACCTCACCAC AGAGCCAGCGATAGGCGCTGCAGGAGCAACAACCTCACCAC Direct Gain 0 0.964168104572288 0 0.758247852325439 prediction 0.928336209144576 Functional Gain - NRBF2 ENSG00000148572 UTR5 Human protein_coding chr10:64893094 chr10:64893094 . . 0 21 hm5C_associated_SNPs_130433 0 0 0 0 0 Cytosol 0 0.500231643093219 0.516495704650878 0.000463286186438205 hm5C_site_50491 DeepMRMD:0.516495704650878;iRNA_m5C:0.000463286186438205 50492 chr12 85674234 85674234 1 + G C BLCA 85674234 + 85674214 85674254 41 GCCGAGCATCACGTGCGCTTGGAGAGGACCTCGCCCTGTCA GCCGAGCATCACGTGCGCTTCGAGAGGACCTCGCCCTGTCA Direct Gain 0 0.964142091750424 0 0.775822460651398 prediction 0.928284183500848 Functional Gain - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85674234 chr12:85674234 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130434 0 0 1 0 1 nucleus 0 0.500231648219765 0.551644921302796 0.000463296439530358 hm5C_site_50492 DeepMRMD:0.551644921302796;iRNA_m5C:0.000463296439530358 50493 chr22 24837199 24837199 1 + T C STAD 24837199 + 24837179 24837219 41 GCCCGGGTCTTGGCAGCTCATGGCAGTGACGGAGAGCAGGT GCCCGGGTCTTGGCAGCTCACGGCAGTGACGGAGAGCAGGT Direct Gain 0 0.964133918176609 0 0.740840792655945 prediction 0.928267836353218 Functional Gain - ADORA2A ENSG00000128271 CDS Human protein_coding chr22:24837199 chr22:24837199 synonymous SNV . 0 21 hm5C_associated_SNPs_130435 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643266364 0.48168158531189 0.000463286532728313 hm5C_site_50493 DeepMRMD:0.48168158531189;iRNA_m5C:0.000463286532728313 50494 chr1 21804653 21804653 1 + G C BLCA 21804653 + 21804633 21804673 41 TCAGGAATCTGCAGGAGTCTGAAGAGGAGGAAGCCCCCCAG TCAGGAATCTGCAGGAGTCTCAAGAGGAGGAAGCCCCCCAG Direct Gain 0 0.964130212569293 0 0.940788388252258 prediction 0.928260425138587 Functional Gain - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21804653 chr1:21804653 nonsynonymous SNV 0.005 2 21 hm5C_associated_SNPs_130436 0 0 0 0 3 nucleus 0 0.500231643892478 0.881576776504516 0.000463287784955302 hm5C_site_50494 DeepMRMD:0.881576776504516;iRNA_m5C:0.000463287784955302 50495 chr17 79205623 79205623 1 + A G rs112826071 79205623 - 79205603 79205643 41 AGCGGGAGCTGCCAGATATGTGGGAGAGGTCTCGGAGGCAC AGCGGGAGCTGCCAGATATGCGGGAGAGGTCTCGGAGGCAC Direct Gain 0 0.964127704215241 0 0.877112030982971 prediction 0.928255408430483 Functional Gain - LOC105371925 ENSG00000260005 ncRNA_exonic Human antisense chr17:79205623 chr17:79205623 . . 0 21 hm5C_associated_SNPs_130437 0 0 0 0 0 unknown 0 0.500231643921092 0.754224061965942 0.000463287842184856 hm5C_site_50495 DeepMRMD:0.754224061965942;iRNA_m5C:0.000463287842184856 50496 chrX 56590347 56590347 1 + C G UCEC 56590347 - 56590327 56590367 41 GGGCCGCAGCAGGGCCGCGGGAGGGGCGCGGGGGGCCGCTG GGGCCGCAGCAGGGCCGCGGCAGGGGCGCGGGGGGCCGCTG Direct Gain 0 0.964109074870743 0 0.914245367050171 prediction 0.928218149741487 Functional Gain - UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56590347 chrX:56590347 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130438 0 0 0 0 0 nucleus 0 0.500231643931989 0.828490734100342 0.00046328786397809 hm5C_site_50496 DeepMRMD:0.828490734100342;iRNA_m5C:0.00046328786397809 50497 chr15 81592440 81592440 1 + C G LGG 81592440 - 81592420 81592460 41 CTGATTGGGCTGCCGCCCTGGGGGAGGGGACTCAGACACAC CTGATTGGGCTGCCGCCCTGCGGGAGGGGACTCAGACACAC Direct Gain 0 0.964104953814616 0 0.95953893661499 prediction 0.928209907629231 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81592440 chr15:81592440 nonsynonymous SNV 0.081 0 21 hm5C_associated_SNPs_130439 0 0 0 0 0 Nucleus 0 0.500231643921092 0.91907787322998 0.000463287842184856 hm5C_site_50497 DeepMRMD:0.91907787322998;iRNA_m5C:0.000463287842184856 50498 chr9 37487901 37487901 1 + T C rs16934141 37487901 + 37487881 37487921 41 TCCTATGTGGGAAACAATTTTGGGACTGGAGCCCTCAAATG TCCTATGTGGGAAACAATTTCGGGACTGGAGCCCTCAAATG Direct Gain 0 0.964103272605996 0 0.864240527153015 prediction 0.928206545211991 Functional Gain - POLR1E ENSG00000137054 CDS Human protein_coding chr9:37487901 chr9:37487901 synonymous SNV . 0 21 hm5C_associated_SNPs_130440 0 0 1 0 2 Ribosome 0 0.500231643931206 0.72848105430603 0.000463287862411343 hm5C_site_50498 DeepMRMD:0.72848105430603;iRNA_m5C:0.000463287862411343 50499 chr5 139946769 139946769 1 + T C UCEC 139946769 + 139946749 139946789 41 GTGGGTATGAGTGTAGAGGATGGGGGTATGCCAGGCCTGGG GTGGGTATGAGTGTAGAGGACGGGGGTATGCCAGGCCTGGG Direct Gain 0 0.96410080208378 0 0.88704115152359 prediction 0.928201604167561 Functional Gain - SLC35A4 ENSG00000176087 CDS Human protein_coding chr5:139946769 chr5:139946769 synonymous SNV . 0 21 hm5C_associated_SNPs_130441 0 0 1 0 0 Ribosome 0 0.500231640813914 0.77408230304718 0.000463281627827383 hm5C_site_50499 DeepMRMD:0.77408230304718;iRNA_m5C:0.000463281627827383 50500 chr12 104458418 104458418 1 + G C LUAD 104458418 + 104458398 104458438 41 CCGCGCCCGGCACGGACACCGAGCGGTGGCCATCCGGGAGC CCGCGCCCGGCACGGACACCCAGCGGTGGCCATCCGGGAGC Direct Gain 0 0.964066268738788 0 0.765998005867004 prediction 0.928132537477577 Functional Gain - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104458418 chr12:104458418 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_130442 0 0 1 0 1 Cytosol 0 0.500231643922426 0.531996011734008 0.000463287844852944 hm5C_site_50500 DeepMRMD:0.531996011734008;iRNA_m5C:0.000463287844852944 50501 chr19 38573187 38573187 1 + C G rs572885640 38573187 - 38573167 38573207 41 CCACGGCCTGCTGGCTTCCGGGGGGCTCCGGCCCTCGTCGG CCACGGCCTGCTGGCTTCCGCGGGGCTCCGGCCCTCGTCGG Direct Gain 0 0.964042496300318 0 0.971285939216614 prediction 0.928084992600636 Functional Gain - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38573187 chr19:38573187 nonsynonymous SNV 0.879 1 21 hm5C_associated_SNPs_130443 0 0 0 0 0 Ribosome 0 0.50023282193864 0.942571878433228 0.000465643877280097 hm5C_site_50501 DeepMRMD:0.942571878433228;iRNA_m5C:0.000465643877280097 50502 chr1 26136235 26136235 1 + C G BLCA 26136235 - 26136215 26136255 41 GATGATGTGGCCGGTGAACTGAGCAGGGGAGAACCAAAAGG GATGATGTGGCCGGTGAACTCAGCAGGGGAGAACCAAAAGG Direct Gain 0 0.96403118081269 0 0.774536430835724 prediction 0.92806236162538 Functional Gain - SELENON ENSG00000162430 CDS Human protein_coding chr1:26136235 chr1:26136235 nonsynonymous SNV 0.983 3 21 hm5C_associated_SNPs_130444 0 0 0 0 0 unknown 0 0.500231643921092 0.549072861671448 0.000463287842184856 hm5C_site_50502 DeepMRMD:0.549072861671448;iRNA_m5C:0.000463287842184856 50503 chr6 7248956 7248956 1 + A G BLCA 7248956 - 7248936 7248976 41 AGCCATGTGGTTGCTGGCATTGGGAGCCAGCTCAGCCTCGT AGCCATGTGGTTGCTGGCATCGGGAGCCAGCTCAGCCTCGT Direct Gain 0 0.964027849672004 0 0.979318141937256 prediction 0.928055699344007 Functional Gain - RREB1 ENSG00000124782 CDS Human protein_coding chr6:7248956 chr6:7248956 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130445 0 0 0 0 0 Nucleus 0 0.500231643921092 0.958636283874512 0.000463287842184856 hm5C_site_50503 DeepMRMD:0.958636283874512;iRNA_m5C:0.000463287842184856 50504 chr19 2222191 2222191 1 + C G CESC 2222191 - 2222171 2222211 41 CCCCACCAAGCCGGGGACTGGAGGAGAGCTGGTGGGCGGGA CCCCACCAAGCCGGGGACTGCAGGAGAGCTGGTGGGCGGGA Direct Gain 0 0.964020224084346 0 0.714125990867615 prediction 0.928040448168692 Functional Gain - DOT1L ENSG00000104885 CDS Human protein_coding chr19:2222191 chr19:2222191 nonsynonymous SNV 0.037 1 21 hm5C_associated_SNPs_130446 0 0 0 0 0 Cytosol 0 0.500231648843623 0.42825198173523 0.000463297687245623 hm5C_site_50504 DeepMRMD:0.42825198173523;iRNA_m5C:0.000463297687245623 50505 chr2 27323158 27323158 1 + G C rs60769101 27323158 + 27323138 27323178 41 AGCTGAACTGACAGGCCAGTGGGGGGCAGGGGTGCGCCTCC AGCTGAACTGACAGGCCAGTCGGGGGCAGGGGTGCGCCTCC Direct Gain 0 0.963985352575726 0 0.986602604389191 prediction 0.927970705151452 Functional Gain - KHK ENSG00000138030 UTR3 Human protein_coding chr2:27323158 chr2:27323158 . . 0 21 hm5C_associated_SNPs_130447 1 0 0 0 0 Endoplasmic reticulum 0 0.500231922127227 0.973205208778382 0.000463844254454893 hm5C_site_50505 DeepMRMD:0.973205208778382;iRNA_m5C:0.000463844254454893 Fructosuria, essential Fructosuria, essential 50506 chr16 14165217 14165217 1 + G C rs568565225 14165217 + 14165197 14165237 41 GAGCGGCGGCGGCGGCGGCCGGGGAGGTGAGCGGCGGGCGG GAGCGGCGGCGGCGGCGGCCCGGGAGGTGAGCGGCGGGCGG Direct Gain 0 0.96398029439937 0 0.893436193466187 prediction 0.927960588798741 Functional Gain - MKL2 ENSG00000186260 UTR5 Human protein_coding chr16:14165217 chr16:14165217 . . 0 21 hm5C_associated_SNPs_130448 0 0 1 0 1 Ribosome 0 0.500232425584715 0.786872386932374 0.000464851169429181 hm5C_site_50506 DeepMRMD:0.786872386932374;iRNA_m5C:0.000464851169429181 50507 chr1 101704868 101704868 1 + T C HNSC 101704868 + 101704848 101704888 41 TCTTGTCTGGGGCCACCACCTACAAGCTCACTCCCGCCCAG TCTTGTCTGGGGCCACCACCCACAAGCTCACTCCCGCCCAG Direct Gain 0 0.963970030941422 0 0.818932890892029 prediction 0.927940061882844 Functional Gain - S1PR1 ENSG00000170989 CDS Human protein_coding chr1:101704868 chr1:101704868 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130449 0 0 0 0 0 Endoplasmic reticulum 0 0.500356607300894 0.637865781784058 0.000713214601787637 hm5C_site_50507 DeepMRMD:0.637865781784058;iRNA_m5C:0.000713214601787637 50508 chr1 35260618 35260618 1 + C G rs146453705 35260618 - 35260598 35260638 41 GATGAGGGCCCCTGGCCCACGGGGAGGTAGAAGAAGACCTG GATGAGGGCCCCTGGCCCACCGGGAGGTAGAAGAAGACCTG Direct Gain 0 0.963942139546605 0 0.958281636238098 prediction 0.92788427909321 Functional Gain - GJA4 ENSG00000187513 CDS Human protein_coding chr1:35260618 chr1:35260618 synonymous SNV . 0 21 hm5C_associated_SNPs_130450 0 0 0 0 0 cytosol 0 0.500231643689114 0.916563272476196 0.000463287378227761 hm5C_site_50508 DeepMRMD:0.916563272476196;iRNA_m5C:0.000463287378227761 50509 chr14 73730424 73730424 1 + C G CESC 73730424 - 73730404 73730444 41 ATTCCGGGGCAGTGTCGTCTGAGCAGGAGAGCCGCACCAAC ATTCCGGGGCAGTGTCGTCTCAGCAGGAGAGCCGCACCAAC Direct Gain 0 0.963939547364788 0 0.784193575382233 prediction 0.927879094729576 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73730424 chr14:73730424 stopgain 0.007 0 21 hm5C_associated_SNPs_130451 0 0 0 0 0 chromatin 0 0.500233262782378 0.568387150764466 0.000466525564755571 hm5C_site_50509 DeepMRMD:0.568387150764466;iRNA_m5C:0.000466525564755571 50510 chr20 31374365 31374365 1 + C G KIRP 31374365 - 31374345 31374385 41 CTGCCGGCCTCGGGTGGAACGTGGGGAAGGCCTGTGCCTCT CTGCCGGCCTCGGGTGGAACCTGGGGAAGGCCTGTGCCTCT Direct Gain 0 0.963916168156148 0 0.917859554290771 prediction 0.927832336312295 Functional Gain - DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374365 chr20:31374365 nonsynonymous SNV 0.117 4 21 hm5C_associated_SNPs_130452 0 0 0 0 0 chromatin 0 0.500231643925597 0.835719108581542 0.000463287851194094 hm5C_site_50510 DeepMRMD:0.835719108581542;iRNA_m5C:0.000463287851194094 50511 chr8 8559968 8559968 1 + C G rs190963991 8559968 - 8559948 8559988 41 GCCAGGGTGCCGGTCAGGTTGAGCAGGAGCCCGCAGGGCGC GCCAGGGTGCCGGTCAGGTTCAGCAGGAGCCCGCAGGGCGC Direct Gain 0 0.963900379257873 0 0.736561834812164 prediction 0.927800758515746 Functional Gain - CLDN23 ENSG00000253958 CDS Human protein_coding chr8:8559968 chr8:8559968 synonymous SNV . 0 21 hm5C_associated_SNPs_130453 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.473123669624328 0.000463287842184856 hm5C_site_50511 DeepMRMD:0.473123669624328;iRNA_m5C:0.000463287842184856 50512 chr19 50926910 50926910 1 + G C LUSC 50926910 + 50926890 50926930 41 ACCCCAGCCCTGTGCTATCAGAGGAGGAAGACTTACCGTTG ACCCCAGCCCTGTGCTATCACAGGAGGAAGACTTACCGTTG Direct Gain 0 0.963845431665169 0 0.921756386756897 prediction 0.927690863330337 Functional Gain - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926910 chr19:50926910 nonsynonymous SNV 0.866 3 21 hm5C_associated_SNPs_130454 0 0 0 0 2 Endoplasmic reticulum 0 0.50023164393129 0.843512773513794 0.000463287862579653 hm5C_site_50512 DeepMRMD:0.843512773513794;iRNA_m5C:0.000463287862579653 50513 chr6 153043097 153043097 1 + G C BLCA 153043097 + 153043077 153043117 41 CGTCGAAGCAACCTCAGCCTGGCCAGTCTCACCTTCCAGCG CGTCGAAGCAACCTCAGCCTCGCCAGTCTCACCTTCCAGCG Direct Gain 0 0.963821811005783 0 0.499703347682953 prediction 0.927643622011565 Functional Gain - MYCT1 ENSG00000120279 CDS Human protein_coding chr6:153043097 chr6:153043097 synonymous SNV . 0 21 hm5C_associated_SNPs_130455 0 0 0 0 0 Cytosol 0 0.500231725722101 0 0.000463451444201679 hm5C_site_50513 DeepMRMD:0;iRNA_m5C:0.000463451444201679 50514 chr14 24642120 24642120 1 + C G BLCA 24642120 - 24642100 24642140 41 ACTCGTACCAGCACGTAATTGAGGATTTCCTCGCTGGGGAA ACTCGTACCAGCACGTAATTCAGGATTTCCTCGCTGGGGAA Direct Gain 0 0.963816450659254 0 0.790504693984985 prediction 0.927632901318508 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24642120 chr14:24642120 synonymous SNV . 0 21 hm5C_associated_SNPs_130456 0 0 0 0 0 chromatin 0 0.50023164392111 0.58100938796997 0.000463287842219495 hm5C_site_50514 DeepMRMD:0.58100938796997;iRNA_m5C:0.000463287842219495 50515 chr13 88328757 88328757 1 + T C rs183111563 88328757 + 88328737 88328777 41 AGACCAAATCCCCGGTGCCTTTGGAGTGTCCCACCGCGTGC AGACCAAATCCCCGGTGCCTCTGGAGTGTCCCACCGCGTGC Direct Gain 0 0.963802409427725 0 0.86836838722229 prediction 0.92760481885545 Functional Gain - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88328757 chr13:88328757 synonymous SNV . 0 21 hm5C_associated_SNPs_130457 0 0 1 0 0 nucleus 0 0.500231645578112 0.73673677444458 0.000463291156223455 hm5C_site_50515 DeepMRMD:0.73673677444458;iRNA_m5C:0.000463291156223455 50516 chr16 2979865 2979865 1 + A G SKCM 2979865 - 2979845 2979885 41 ACAGGACGCAGTGCACTTCCTGGGGCTTGGATCCCACCCCA ACAGGACGCAGTGCACTTCCCGGGGCTTGGATCCCACCCCA Direct Gain 0 0.963801450354674 0 0.951814651489258 prediction 0.927602900709348 Functional Gain - FLYWCH1 ENSG00000059122 CDS Human protein_coding chr16:2979865 chr16:2979865 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130458 0 0 0 0 0 chromatin 0 0.500231643921092 0.903629302978516 0.000463287842184856 hm5C_site_50516 DeepMRMD:0.903629302978516;iRNA_m5C:0.000463287842184856 50517 chr20 49354448 49354448 1 + G C BLCA 49354448 + 49354428 49354468 41 GATCAAAACCTGGAAAATTTGAGGAGTTTTATGGATTACTA GATCAAAACCTGGAAAATTTCAGGAGTTTTATGGATTACTA Direct Gain 0 0.963795707687795 0 0.777283310890198 prediction 0.92759141537559 Functional Gain - PARD6B ENSG00000124171 CDS Human protein_coding chr20:49354448 chr20:49354448 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130459 0 0 1 0 1 Nucleus 0 0.500231643921092 0.554566621780396 0.000463287842184856 hm5C_site_50517 DeepMRMD:0.554566621780396;iRNA_m5C:0.000463287842184856 50518 chr17 48046960 48046960 1 + C G rs143763914 48046960 - 48046940 48046980 41 GCCTGGAGTAGGACAAATTGGGGGAGGCTGCGGTTGTAGGG GCCTGGAGTAGGACAAATTGCGGGAGGCTGCGGTTGTAGGG Direct Gain 0 0.963785728398697 0 0.86657977104187 prediction 0.927571456797393 Functional Gain - DLX4 ENSG00000108813 CDS Human protein_coding chr17:48046960 chr17:48046960 nonsynonymous SNV 0.761 2 21 hm5C_associated_SNPs_130460 0 0 0 0 0 Cytosol 0 0.500231643921093 0.73315954208374 0.000463287842185078 hm5C_site_50518 DeepMRMD:0.73315954208374;iRNA_m5C:0.000463287842185078 50519 chr7 43622927 43622927 1 + G C rs200156727 43622927 + 43622907 43622947 41 GGGCAGGCCGGGGTCTGAGCGGGCCGTGCCGGCCGCCGCCG GGGCAGGCCGGGGTCTGAGCCGGCCGTGCCGGCCGCCGCCG Direct Gain 0 0.96378051868525 0 0.863123893737793 prediction 0.9275610373705 Functional Gain - STK17A ENSG00000164543 CDS Human protein_coding chr7:43622927 chr7:43622927 nonsynonymous SNV 0.009 0 21 hm5C_associated_SNPs_130461 0 0 1 0 0 Ribosome 0 0.500231643921251 0.726247787475586 0.000463287842501492 hm5C_site_50519 DeepMRMD:0.726247787475586;iRNA_m5C:0.000463287842501492 50520 chr11 1093383 1093383 1 + A G rs574665829 1093383 - 1093363 1093403 41 GTCTGTGTGCCGGTGGGTGTTGGGGTTGGGGTCACCGTAGT GTCTGTGTGCCGGTGGGTGTCGGGGTTGGGGTCACCGTAGT Direct Gain 0 0.963767662968274 0 0.977508187294006 prediction 0.927535325936549 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1093383 chr11:1093383 synonymous SNV . 0 21 hm5C_associated_SNPs_130462 0 0 0 0 0 Endoplasmic reticulum 0 0.500231649733369 0.955016374588012 0.000463299466738398 hm5C_site_50520 DeepMRMD:0.955016374588012;iRNA_m5C:0.000463299466738398 50521 chr8 77768463 77768463 1 + C G rs61729534 77768463 - 77768443 77768483 41 AGAAGGACTGGAGGAAGGCCGGGGAGTCCGGGGTAGGCTGT AGAAGGACTGGAGGAAGGCCCGGGAGTCCGGGGTAGGCTGT Direct Gain 0 0.963760722012002 0 0.832162499427795 prediction 0.927521444024004 Functional Gain - ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77768463 chr8:77768463 synonymous SNV . 0 21 hm5C_associated_SNPs_130463 0 0 0 0 0 Ribosome 0 0.500231643921092 0.66432499885559 0.000463287842184856 hm5C_site_50521 DeepMRMD:0.66432499885559;iRNA_m5C:0.000463287842184856 50522 chr9 115421967 115421967 1 + A G LUSC 115421967 - 115421947 115421987 41 GGGCAAAGTAGGGCTGGTTTTGGGGGTCTTTGAGCAGCTCG GGGCAAAGTAGGGCTGGTTTCGGGGGTCTTTGAGCAGCTCG Direct Gain 0 0.963613125512723 0 0.973662495613098 prediction 0.927226251025446 Functional Gain - KIAA1958 ENSG00000165185 CDS Human protein_coding chr9:115421967 chr9:115421967 nonsynonymous SNV 0.944 0 21 hm5C_associated_SNPs_130464 0 0 0 0 0 Nucleus 0 0.500231643921094 0.947324991226196 0.000463287842187521 hm5C_site_50522 DeepMRMD:0.947324991226196;iRNA_m5C:0.000463287842187521 50523 chr15 78833149 78833149 1 + T C rs539113860 78833149 + 78833129 78833169 41 TCTGTGGGCAGGACCGAGAGTTGGGGTGGCTTCCGTCCTCA TCTGTGGGCAGGACCGAGAGCTGGGGTGGCTTCCGTCCTCA Direct Gain 0 0.963591597173435 0 0.835691809654236 prediction 0.92718319434687 Functional Gain - PSMA4 ENSG00000041357 UTR5 Human protein_coding chr15:78833149 chr15:78833149 . . 0 21 hm5C_associated_SNPs_130465 0 0 1 0 0 Ribosome 0 0.500231644445453 0.671383619308472 0.000463288890905078 hm5C_site_50523 DeepMRMD:0.671383619308472;iRNA_m5C:0.000463288890905078 50524 chr9 136305517 136305517 1 + T G CHOL 136305517 - 136305497 136305537 41 AGGGAGGGGTAGGTGGTGTTAGGGGAGATGCTCATCTTCCC AGGGAGGGGTAGGTGGTGTTCGGGGAGATGCTCATCTTCCC Direct Gain 0 0.963574689044664 0 0.98467493057251 prediction 0.927149378089329 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136305517 chr9:136305517 synonymous SNV . 0 21 hm5C_associated_SNPs_130466 0 0 0 0 0 nucleus 0 0.500231643921092 0.96934986114502 0.000463287842184856 hm5C_site_50524 DeepMRMD:0.96934986114502;iRNA_m5C:0.000463287842184856 50525 chr9 139250959 139250959 1 + A G UCEC 139250959 - 139250939 139250979 41 AGAAGTCGTCCCCCGGCTCCTGGGGCTCGCCGTGGCCTCGG AGAAGTCGTCCCCCGGCTCCCGGGGCTCGCCGTGGCCTCGG Direct Gain 0 0.963528373413357 0 0.888510227203369 prediction 0.927056746826713 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139250959 chr9:139250959 nonsynonymous SNV 0.716 4 21 hm5C_associated_SNPs_130467 0 0 0 0 0 Cytosol 0 0.500232000264269 0.777020454406738 0.000464000528537678 hm5C_site_50525 DeepMRMD:0.777020454406738;iRNA_m5C:0.000464000528537678 50526 chr17 35873324 35873324 1 + T C rs1051849 35873324 + 35873304 35873344 41 AGCTCAGTGCAAAAATCACTTTGGGGCCTCATTAACCCTTT AGCTCAGTGCAAAAATCACTCTGGGGCCTCATTAACCCTTT Direct Gain 0 0.963515629146068 0 0.891823470592499 prediction 0.927031258292135 Functional Gain - DUSP14 ENSG00000161326 UTR3 Human other chr17:35873324 chr17:35873324 . . 0 21 hm5C_associated_SNPs_130468 0 0 1 0 0 Endoplasmic reticulum 0 0.500231643921005 0.783646941184998 0.000463287842010551 hm5C_site_50526 DeepMRMD:0.783646941184998;iRNA_m5C:0.000463287842010551 50527 chr13 113817415 113817415 1 + G C CESC 113817415 + 113817395 113817435 41 GCACCTGCTCCCCCGGCTATGAGGGCAGCAACTGCGAGCTG GCACCTGCTCCCCCGGCTATCAGGGCAGCAACTGCGAGCTG Direct Gain 0 0.963513768986522 0 0.8951136469841 prediction 0.927027537973044 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113817415 chr13:113817415 nonsynonymous SNV 0.109 3 21 hm5C_associated_SNPs_130469 0 0 0 0 2 exosome 0 0.500231643921092 0.7902272939682 0.000463287842184856 hm5C_site_50527 DeepMRMD:0.7902272939682;iRNA_m5C:0.000463287842184856 50528 chr13 53603056 53603056 1 + A G rs34901659 53603056 - 53603036 53603076 41 GCTGAAGCCGGGGCTGGGAATTGGAGGTCCCACATCCCCCA GCTGAAGCCGGGGCTGGGAACTGGAGGTCCCACATCCCCCA Direct Gain 0 0.96344920945347 0 0.911277830600739 prediction 0.926898418906941 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53603056 chr13:53603056 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_130470 0 0 0 0 0 exosome 0 0.500231643974826 0.822555661201478 0.000463287949651559 hm5C_site_50528 DeepMRMD:0.822555661201478;iRNA_m5C:0.000463287949651559 50529 chr16 90172970 90172970 1 + C G BRCA 90172970 - 90172950 90172990 41 GCGTCTCCCGAGTAGGTCCTGAGGAGGAGGAGGCTGGGCCC GCGTCTCCCGAGTAGGTCCTCAGGAGGAGGAGGCTGGGCCC Direct Gain 0 0.96343723570024 0 0.945284485816956 prediction 0.92687447140048 Functional Gain - FAM157B;FAM157C ENSG00000260528 ncRNA_exonic Human lincRNA chr16:90172970 chr16:90172970 . . 0 21 hm5C_associated_SNPs_130471 0 0 0 0 0 unknown 0 0.500231643921092 0.890568971633912 0.000463287842184856 hm5C_site_50529 DeepMRMD:0.890568971633912;iRNA_m5C:0.000463287842184856 50530 chr16 2506791 2506791 1 + A G UCEC 2506791 - 2506771 2506811 41 GCCACCGTCCACGGAGCTTGTGGGACTTGCGGTGCTGACGG GCCACCGTCCACGGAGCTTGCGGGACTTGCGGTGCTGACGG Direct Gain 0 0.963403974882651 0 0.942298650741577 prediction 0.926807949765301 Functional Gain - CCNF ENSG00000162063 CDS Human protein_coding chr16:2506791 chr16:2506791 nonsynonymous SNV 0.283 0 21 hm5C_associated_SNPs_130472 0 0 1 0 0 Cytosol 0 0.500231650794352 0.884597301483154 0.000463301588704335 hm5C_site_50530 DeepMRMD:0.884597301483154;iRNA_m5C:0.000463301588704335 50531 chr2 69046427 69046427 1 + T C GBM 69046427 + 69046407 69046447 41 ACTGAAGACCTCCGAATTTCTAGGACAGACAGCTTCAGTAG ACTGAAGACCTCCGAATTTCCAGGACAGACAGCTTCAGTAG Direct Gain 0 0.96339638370288 0 0.818692803382874 prediction 0.92679276740576 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046427 chr2:69046427 synonymous SNV . 0 21 hm5C_associated_SNPs_130473 0 0 0 0 1 chromatin 0 0.500226092619017 0.637385606765748 0.000452185238033698 hm5C_site_50531 DeepMRMD:0.637385606765748;iRNA_m5C:0.000452185238033698 50532 chr6 106960673 106960673 1 + G C LUSC 106960673 + 106960653 106960693 41 GCACTGCGGCCGAGAGCGGGGAGGAGGCGGCGCGGGCCATC GCACTGCGGCCGAGAGCGGGCAGGAGGCGGCGCGGGCCATC Direct Gain 0 0.963394531671136 0 0.844444930553436 prediction 0.926789063342272 Functional Gain - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:106960673 chr6:106960673 nonsynonymous SNV 0.975 2 21 hm5C_associated_SNPs_130474 0 0 0 0 0 unknown 0 0.500231642215659 0.688889861106872 0.000463284431317712 hm5C_site_50532 DeepMRMD:0.688889861106872;iRNA_m5C:0.000463284431317712 50533 chr6 160328132 160328132 1 + G C CESC 160328132 + 160328112 160328152 41 TCTCCCCAGTGGGGTTTGTTGAGAATGGGATTCTCCTCTGG TCTCCCCAGTGGGGTTTGTTCAGAATGGGATTCTCCTCTGG Direct Gain 0 0.963378772619546 0 0.847866714000702 prediction 0.926757545239093 Functional Gain - MAS1 ENSG00000130368 CDS Human protein_coding chr6:160328132 chr6:160328132 nonsynonymous SNV 0.687 2 21 hm5C_associated_SNPs_130475 0 0 0 0 0 exosome 0 0.500231643916824 0.695733428001404 0.000463287833647019 hm5C_site_50533 DeepMRMD:0.695733428001404;iRNA_m5C:0.000463287833647019 50534 chr19 58578900 58578900 1 + G C CESC 58578900 + 58578880 58578920 41 AGCATCTGCGAATCCACACTGGGGAGAAACCCTATCAGTGT AGCATCTGCGAATCCACACTCGGGAGAAACCCTATCAGTGT Direct Gain 0 0.963349672492858 0 0.968732714653015 prediction 0.926699344985716 Functional Gain - ZNF135 ENSG00000176293 CDS Human protein_coding chr19:58578900 chr19:58578900 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_130476 0 0 0 0 0 exosome 0 0.500231643921964 0.93746542930603 0.000463287843928573 hm5C_site_50534 DeepMRMD:0.93746542930603;iRNA_m5C:0.000463287843928573 50535 chr4 77228056 77228056 1 + G C rs199535918 77228056 + 77228036 77228076 41 GGAGAAAGACGCCCCTCTTGGGGGAGCTGCGATTCCGGGAG GGAGAAAGACGCCCCTCTTGCGGGAGCTGCGATTCCGGGAG Direct Gain 0 0.963307924291001 0 0.967704057693481 prediction 0.926615848582002 Functional Gain - STBD1 ENSG00000118804 CDS Human protein_coding chr4:77228056 chr4:77228056 nonsynonymous SNV 0.597 0 21 hm5C_associated_SNPs_130477 0 0 0 0 1 exosome 0 0.500231643921092 0.935408115386962 0.000463287842184856 hm5C_site_50535 DeepMRMD:0.935408115386962;iRNA_m5C:0.000463287842184856 50536 chr6 80816425 80816425 1 + G C UVM 80816425 + 80816405 80816445 41 GCGGGGATGGCGGTTGTAGCGGCGGCTGCCGGCTGGCTACT GCGGGGATGGCGGTTGTAGCCGCGGCTGCCGGCTGGCTACT Direct Gain 0 0.963248343409893 0 0.793289422988892 prediction 0.926496686819787 Functional Gain - BCKDHB ENSG00000083123 CDS Human protein_coding chr6:80816425 chr6:80816425 synonymous SNV . 0 21 hm5C_associated_SNPs_130478 0 0 1 0 0 Ribosome 0 0.500231643921087 0.586578845977784 0.000463287842173532 hm5C_site_50536 DeepMRMD:0.586578845977784;iRNA_m5C:0.000463287842173532 50537 chr19 7505036 7505036 1 + C G rs375575448 7505036 - 7505016 7505056 41 AAAGACAGCTCGGGGCGGCCGGGGAGCGCGCTGTGCCTGTC AAAGACAGCTCGGGGCGGCCCGGGAGCGCGCTGTGCCTGTC Direct Gain 0 0.963238026639706 0 0.89736008644104 prediction 0.926476053279413 Functional Gain - ARHGEF18 ENSG00000104880 CDS Human protein_coding chr19:7505036 chr19:7505036 synonymous SNV . 0 21 hm5C_associated_SNPs_130479 0 0 0 0 0 Cytosol 0 0.500231643921092 0.79472017288208 0.000463287842184856 hm5C_site_50537 DeepMRMD:0.79472017288208;iRNA_m5C:0.000463287842184856 50538 chr1 206652454 206652454 1 + T G rs565611660 206652454 - 206652434 206652474 41 TCCCTGAAGGCCAGCCCCTTAGGGATGGCTGTGCTGAAGAG TCCCTGAAGGCCAGCCCCTTCGGGATGGCTGTGCTGAAGAG Direct Gain 0 0.963224318319703 0 0.930891633033752 prediction 0.926448636639406 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206652454 chr1:206652454 synonymous SNV . 0 21 hm5C_associated_SNPs_130480 0 0 0 0 0 Cytosol 0 0.500231643921092 0.861783266067504 0.000463287842184856 hm5C_site_50538 DeepMRMD:0.861783266067504;iRNA_m5C:0.000463287842184856 50539 chr7 150417406 150417406 1 + A G COAD 150417406 - 150417386 150417426 41 GTCCGGGGGCCGAGAGCAGGTAGCAGTGACCTCTCTCCTCA GTCCGGGGGCCGAGAGCAGGCAGCAGTGACCTCTCTCCTCA Direct Gain 0 0.963216934894008 0 0.83810293674469 prediction 0.926433869788015 Functional Gain - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417406 chr7:150417406 nonsynonymous SNV 0.015 3 21 hm5C_associated_SNPs_130481 0 0 0 0 0 unknown 0 0.500231643921114 0.67620587348938 0.000463287842228821 hm5C_site_50539 DeepMRMD:0.67620587348938;iRNA_m5C:0.000463287842228821 50540 chr3 40552976 40552976 1 + G C BLCA 40552976 + 40552956 40552996 41 TTTAGGAACCAGTGACCTTTGAGGATGTGGCTGTGTACTTC TTTAGGAACCAGTGACCTTTCAGGATGTGGCTGTGTACTTC Direct Gain 0 0.96318325603393 0 0.680966436862946 prediction 0.92636651206786 Functional Gain - ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40552976 chr3:40552976 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_130482 0 0 1 0 1 cytosol 0 0.500231643921073 0.361932873725892 0.000463287842145998 hm5C_site_50540 DeepMRMD:0.361932873725892;iRNA_m5C:0.000463287842145998 50541 chr7 819695 819695 1 + A G rs61755909 819695 - 819675 819715 41 ACTGGACACTGCTCTGATAGTAGGATTTTGCGTTGGCACCC ACTGGACACTGCTCTGATAGCAGGATTTTGCGTTGGCACCC Direct Gain 0 0.963178811411566 0 0.901654601097107 prediction 0.926357622823131 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:819695 chr7:819695 nonsynonymous SNV 0.027 0 21 hm5C_associated_SNPs_130483 1 0 0 0 0 Ribosome 0 0.500232627318091 0.803309202194214 0.000465254636181189 hm5C_site_50541 DeepMRMD:0.803309202194214;iRNA_m5C:0.000465254636181189 Primary ciliary dyskinesia Primary ciliary dyskinesia 50542 chr1 247768902 247768902 1 + T C UCEC 247768902 + 247768882 247768922 41 GGAGGGATGGGATTGGGCAATGAGAGTTCCCTAATGGATTT GGAGGGATGGGATTGGGCAACGAGAGTTCCCTAATGGATTT Direct Gain 0 0.963160041543617 0 0.596110999584198 prediction 0.926320083087234 Functional Gain - OR2G3 ENSG00000177476 CDS Human protein_coding chr1:247768902 chr1:247768902 synonymous SNV . 0 21 hm5C_associated_SNPs_130484 0 0 0 0 0 unknown 0 0.500231643947627 0.192221999168396 0.000463287895254849 hm5C_site_50542 DeepMRMD:0.192221999168396;iRNA_m5C:0.000463287895254849 50543 chr18 32556931 32556931 1 + T C rs552470603 32556931 + 32556911 32556951 41 AGCGGCGGCGGCGGCGGCGGTGGCAGACTGCGAGTCACGTG AGCGGCGGCGGCGGCGGCGGCGGCAGACTGCGAGTCACGTG Direct Gain 0 0.963144222915694 0 0.891076803207397 prediction 0.926288445831388 Functional Gain - MAPRE2 ENSG00000166974 UTR5 Human protein_coding chr18:32556931 chr18:32556931 . . 0 21 hm5C_associated_SNPs_130485 0 0 0 0 0 Ribosome 0 0.500231643930576 0.782153606414794 0.000463287861152128 hm5C_site_50543 DeepMRMD:0.782153606414794;iRNA_m5C:0.000463287861152128 50544 chr6 88362934 88362934 1 + G C BLCA 88362934 + 88362914 88362954 41 GCAGCACAGCTAAGAGAATAGAGGAGTTCCTGGCCCAGTTT GCAGCACAGCTAAGAGAATACAGGAGTTCCTGGCCCAGTTT Direct Gain 0 0.963129956045428 0 0.684310913085938 prediction 0.926259912090856 Functional Gain - ORC3 ENSG00000135336 CDS Human protein_coding chr6:88362934 chr6:88362934 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130486 0 0 1 1 1 Cytosol 0 0.500231643933435 0.368621826171876 0.000463287866869999 hm5C_site_50544 DeepMRMD:0.368621826171876;iRNA_m5C:0.000463287866869999 50545 chr20 47836040 47836040 1 + G C LUSC 47836040 + 47836020 47836060 41 GCGAGGATGACGAGGTGCCGGTGGAGCCCGAGTCTGACTCC GCGAGGATGACGAGGTGCCGCTGGAGCCCGAGTCTGACTCC Direct Gain 0 0.963122200879597 0 0.865191400051117 prediction 0.926244401759193 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47836040 chr20:47836040 nonsynonymous SNV 0.363 1 21 hm5C_associated_SNPs_130487 0 0 1 0 1 chromatin 0 0.500231644414174 0.730382800102234 0.000463288828348896 hm5C_site_50545 DeepMRMD:0.730382800102234;iRNA_m5C:0.000463288828348896 50546 chr17 36478745 36478745 1 + T C rs191016452 36478745 + 36478725 36478765 41 ACAGTATGTTTCAGAGAACATTGGATATCAGTTTTTCCCAC ACAGTATGTTTCAGAGAACACTGGATATCAGTTTTTCCCAC Direct Gain 0 0.963070934708822 0 0.804531693458557 prediction 0.926141869417644 Functional Gain - MRPL45 ENSG00000174100 UTR3 Human other chr17:36478745 chr17:36478745 . . 0 21 hm5C_associated_SNPs_130488 0 0 1 0 0 Ribosome 0 0.500231643930763 0.609063386917114 0.000463287861526496 hm5C_site_50546 DeepMRMD:0.609063386917114;iRNA_m5C:0.000463287861526496 50547 chrX 152228539 152228539 1 + T C rs55968837 152228539 + 152228519 152228559 41 CCTGTCCCAGCAGATGGGCTTGGGAGGGGGCTCCCTAAAGC CCTGTCCCAGCAGATGGGCTCGGGAGGGGGCTCCCTAAAGC Direct Gain 0 0.963049026739678 0 0.926244258880615 prediction 0.926098053479357 Functional Gain - PNMA3 ENSG00000183837 UTR3 Human protein_coding chrX:152228539 chrX:152228539 . . 0 21 hm5C_associated_SNPs_130489 0 0 0 0 0 exosome 0 0.500231643921092 0.85248851776123 0.000463287842184856 hm5C_site_50547 DeepMRMD:0.85248851776123;iRNA_m5C:0.000463287842184856 50548 chr20 32664886 32664886 1 + T C STAD 32664886 + 32664866 32664906 41 GGCGGCGGCGGCGGTGGTGGTGGCAGCGGTGGCGGTGGCAG GGCGGCGGCGGCGGTGGTGGCGGCAGCGGTGGCGGTGGCAG Direct Gain 0 0.963045741917001 0 0.960159420967102 prediction 0.926091483834002 Functional Gain - RALY ENSG00000125970 CDS Human protein_coding chr20:32664886 chr20:32664886 synonymous SNV . 0 21 hm5C_associated_SNPs_130490 0 0 1 0 1 Cytosol 0 0.500231643921092 0.920318841934204 0.000463287842184856 hm5C_site_50548 DeepMRMD:0.920318841934204;iRNA_m5C:0.000463287842184856 50549 chr12 81472038 81472038 1 + G C BLCA 81472038 + 81472018 81472058 41 CGGGCCCGCGGGGCGGTCTCGGGGGCCGGGGATGCAGGGCA CGGGCCCGCGGGGCGGTCTCCGGGGCCGGGGATGCAGGGCA Direct Gain 0 0.963035419516987 0 0.964242219924927 prediction 0.926070839033974 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81472038 chr12:81472038 nonsynonymous SNV 0.013 2 21 hm5C_associated_SNPs_130491 0 0 1 0 0 cytosol 0 0.500231989341013 0.928484439849854 0.000463978682025745 hm5C_site_50549 DeepMRMD:0.928484439849854;iRNA_m5C:0.000463978682025745 50550 chr14 56233760 56233760 1 + T C rs11622564 56233760 + 56233740 56233780 41 CAAGGGAGCCGGAAGACTAATTGGAGGGGCCCTCCCTTGTG CAAGGGAGCCGGAAGACTAACTGGAGGGGCCCTCCCTTGTG Direct Gain 0 0.963034780369809 0 0.840857267379761 prediction 0.926069560739619 Functional Gain - RPL13AP3 ENSG00000177350 ncRNA_exonic Human transcribed_processed_pseudogene chr14:56233760 chr14:56233760 . . 0 21 hm5C_associated_SNPs_130492 0 0 1 0 0 unknown 0 0.500231643921092 0.681714534759522 0.000463287842184856 hm5C_site_50550 DeepMRMD:0.681714534759522;iRNA_m5C:0.000463287842184856 50551 chr2 234621780 234621780 1 + T C rs3755323 234621780 + 234621760 234621800 41 GCTCAGCATGCGGGAGGCCTTGCGGGACCTCCATGCGAGAG GCTCAGCATGCGGGAGGCCTCGCGGGACCTCCATGCGAGAG Direct Gain 0 0.963022022771734 0 0.708215296268463 prediction 0.926044045543468 Functional Gain - UGT1A5 ENSG00000240224;ENSG00000241635 CDS Human other chr2:234621780 chr2:234621780 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_130493 0 0 0 0 0 exosome 0 0.500231588459157 0.416430592536926 0.000463176918314101 hm5C_site_50551 DeepMRMD:0.416430592536926;iRNA_m5C:0.000463176918314101 50552 chr9 916871 916871 1 + G C LUSC 916871 + 916851 916891 41 TGCCCCAGTTCTTCACTTTTGAGGATGCTCCCTCTTACCCG TGCCCCAGTTCTTCACTTTTCAGGATGCTCCCTCTTACCCG Direct Gain 0 0.96301649607644 0 0.945400595664978 prediction 0.926032992152881 Functional Gain - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:916871 chr9:916871 nonsynonymous SNV 0.781 2 21 hm5C_associated_SNPs_130494 0 0 0 0 1 unknown 0 0.500231643921092 0.890801191329956 0.000463287842184856 hm5C_site_50552 DeepMRMD:0.890801191329956;iRNA_m5C:0.000463287842184856 50553 chr1 209949007 209949007 1 + G C CESC 209949007 + 209948987 209949027 41 GCCAGTATGAGGCTCTGAAGGAGGACTGGAGGACCCTTGGG GCCAGTATGAGGCTCTGAAGCAGGACTGGAGGACCCTTGGG Direct Gain 0 0.962955363569712 0 0.772612690925598 prediction 0.925910727139424 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209949007 chr1:209949007 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130495 0 0 0 0 2 exosome 0 0.500231643921092 0.545225381851196 0.000463287842184856 hm5C_site_50553 DeepMRMD:0.545225381851196;iRNA_m5C:0.000463287842184856 50554 chr1 248525734 248525734 1 + T C KIRC 248525734 + 248525714 248525754 41 ACTGTGGTCATCCTCTTCTATGGGGCTGCCATCTACACCTA ACTGTGGTCATCCTCTTCTACGGGGCTGCCATCTACACCTA Direct Gain 0 0.962938691711632 0 0.905801296234131 prediction 0.925877383423264 Functional Gain - OR2T4 ENSG00000196944 CDS Human protein_coding chr1:248525734 chr1:248525734 synonymous SNV . 0 21 hm5C_associated_SNPs_130496 0 0 0 0 0 unknown 0 0.500231643921092 0.811602592468262 0.000463287842184856 hm5C_site_50554 DeepMRMD:0.811602592468262;iRNA_m5C:0.000463287842184856 50555 chr5 135266007 135266007 1 + T C rs550301049 135266007 + 135265987 135266027 41 GGCCAGGCGGGGCGGGGCCTTGGGCGGCTGCGGTCTGCGCG GGCCAGGCGGGGCGGGGCCTCGGGCGGCTGCGGTCTGCGCG Direct Gain 0 0.962910198373296 0 0.966554701328278 prediction 0.925820396746592 Functional Gain - FBXL21 ENSG00000145826 intronic Human protein_coding chr5:135266007 chr5:135266007 . . 0 21 hm5C_associated_SNPs_130497 0 0 0 0 0 unknown 0 0.500231643892027 0.933109402656556 0.000463287784054467 hm5C_site_50555 DeepMRMD:0.933109402656556;iRNA_m5C:0.000463287784054467 50556 chr11 94732013 94732013 1 + G C COAD 94732013 + 94731993 94732033 41 CAGAACCTGAGCCCCTACCTGAGGATGGGGCTTTGATGGAC CAGAACCTGAGCCCCTACCTCAGGATGGGGCTTTGATGGAC Direct Gain 0 0.962778262264638 0 0.881081998348236 prediction 0.925556524529277 Functional Gain - KDM4D ENSG00000186280 CDS Human protein_coding chr11:94732013 chr11:94732013 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_130498 0 0 0 0 0 chromatin 0 0.500231643921093 0.762163996696472 0.000463287842185078 hm5C_site_50556 DeepMRMD:0.762163996696472;iRNA_m5C:0.000463287842185078 50557 chr3 35835331 35835331 1 + C G BLCA 35835331 - 35835311 35835351 41 AATCAGCCTAAGGTTGTTCTGAGGGGTGGGCGGTGTGACAT AATCAGCCTAAGGTTGTTCTCAGGGGTGGGCGGTGTGACAT Direct Gain 0 0.96275547503142 0 0.963688492774963 prediction 0.925510950062839 Functional Gain - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35835331 chr3:35835331 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130499 0 0 0 0 0 Nucleus 0 0.500231643921099 0.927376985549926 0.000463287842197735 hm5C_site_50557 DeepMRMD:0.927376985549926;iRNA_m5C:0.000463287842197735 50558 chr17 51900736 51900736 1 + A C KIRC 51900736 + 51900716 51900756 41 GACCAGCGTACCGCCACGAAATGGGTTGCGATGATCCCCCA GACCAGCGTACCGCCACGAACTGGGTTGCGATGATCCCCCA Direct Gain 0 0.962750445731108 0 0.709841847419739 prediction 0.925500891462216 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51900736 chr17:51900736 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130500 0 0 0 0 0 exosome 0 0.500231643921094 0.419683694839478 0.000463287842187965 hm5C_site_50558 DeepMRMD:0.419683694839478;iRNA_m5C:0.000463287842187965 50559 chr4 8621215 8621215 1 + G C SARC 8621215 + 8621195 8621235 41 CTGGGAGGTGCCAGCTCTTTGGGGGAGGCCACGGAGCCCGA CTGGGAGGTGCCAGCTCTTTCGGGGAGGCCACGGAGCCCGA Direct Gain 0 0.96274498287453 0 0.969999313354492 prediction 0.925489965749061 Functional Gain - CPZ ENSG00000109625 CDS Human protein_coding chr4:8621215 chr4:8621215 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130501 0 0 1 0 0 Endoplasmic reticulum 0 0.500231643921298 0.939998626708984 0.000463287842596749 hm5C_site_50559 DeepMRMD:0.939998626708984;iRNA_m5C:0.000463287842596749 50560 chr12 123259144 123259144 1 + G C rs549123858 123259144 + 123259124 123259164 41 GGGCTCGCCCCCGCCGCTCGGGGCAGGCGCGCCGATGGCGT GGGCTCGCCCCCGCCGCTCGCGGCAGGCGCGCCGATGGCGT Direct Gain 0 0.962742688509079 0 0.8282151222229 prediction 0.925485377018157 Functional Gain - CCDC62 ENSG00000130783 UTR5 Human protein_coding chr12:123259144 chr12:123259144 . . 0 21 hm5C_associated_SNPs_130502 0 0 0 0 0 chromatin 0 0.500231643921034 0.6564302444458 0.000463287842068061 hm5C_site_50560 DeepMRMD:0.6564302444458;iRNA_m5C:0.000463287842068061 50561 chr19 57765286 57765286 1 + G C COAD 57765286 + 57765266 57765306 41 GGCACCAGCAGACTCATACCGGGGAGAAGCCCTATGAGTGC GGCACCAGCAGACTCATACCCGGGAGAAGCCCTATGAGTGC Direct Gain 0 0.962722582104723 0 0.933881759643555 prediction 0.925445164209445 Functional Gain - ZNF805 ENSG00000204524 CDS Human protein_coding chr19:57765286 chr19:57765286 nonsynonymous SNV 0.374 3 21 hm5C_associated_SNPs_130503 0 0 0 0 0 chromatin 0 0.500231643937494 0.86776351928711 0.000463287874988616 hm5C_site_50561 DeepMRMD:0.86776351928711;iRNA_m5C:0.000463287874988616 50562 chr6 27783094 27783094 1 + T C CESC 27783094 + 27783074 27783114 41 AACAAGCGCTCGACCATCACTTCGAGGGAGATCCAGACGGC AACAAGCGCTCGACCATCACCTCGAGGGAGATCCAGACGGC Direct Gain 0 0.962701615350082 0 0.863418221473694 prediction 0.925403230700165 Functional Gain - HIST1H2BM ENSG00000196374 CDS Human other chr6:27783094 chr6:27783094 synonymous SNV . 0 21 hm5C_associated_SNPs_130504 0 0 0 0 0 nucleus 0 0.500231649128541 0.726836442947388 0.000463298257081135 hm5C_site_50562 DeepMRMD:0.726836442947388;iRNA_m5C:0.000463298257081135 50563 chr5 131996597 131996597 1 + G C rs2069750 131996597 + 131996577 131996617 41 CCGAGGCAGGGTCAGGAGAGGGGCAGAACAGCCGCTCCTGT CCGAGGCAGGGTCAGGAGAGCGGCAGAACAGCCGCTCCTGT Direct Gain 0 0.962680290624543 0 0.747969269752502 prediction 0.925360581249086 Functional Gain - IL13 ENSG00000223442 ncRNA_intronic Human antisense chr5:131996597 chr5:131996597 . . 0 21 hm5C_associated_SNPs_130505 0 0 0 0 0 exosome 0 0.50023164392088 0.495938539505004 0.000463287841760973 hm5C_site_50563 DeepMRMD:0.495938539505004;iRNA_m5C:0.000463287841760973 50564 chr8 110099864 110099864 1 + A C rs5775 110099864 + 110099844 110099884 41 ATTTGTGGCCTGGGCATTGTAGGCAACATCATGGTAGTCCT ATTTGTGGCCTGGGCATTGTCGGCAACATCATGGTAGTCCT Direct Gain 0 0.962645333419951 0 0.928318560123444 prediction 0.925290666839903 Functional Gain - TRHR ENSG00000174417 CDS Human protein_coding chr8:110099864 chr8:110099864 synonymous SNV . 0 21 hm5C_associated_SNPs_130506 0 0 0 0 0 exosome 0 0.500231643921092 0.856637120246888 0.000463287842184856 hm5C_site_50564 DeepMRMD:0.856637120246888;iRNA_m5C:0.000463287842184856 50565 chr11 68704361 68704361 1 + C G UCEC 68704361 - 68704341 68704381 41 GGTAGGGGGCACTGGCTGGAGAGGGGCTGGGCCACCGGTCC GGTAGGGGGCACTGGCTGGACAGGGGCTGGGCCACCGGTCC Direct Gain 0 0.962639326537656 0 0.952241599559784 prediction 0.925278653075312 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68704361 chr11:68704361 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_130507 0 0 0 0 0 chromatin 0 0.500231643921188 0.904483199119568 0.000463287842375371 hm5C_site_50565 DeepMRMD:0.904483199119568;iRNA_m5C:0.000463287842375371 50566 chr10 81072643 81072643 1 + C G rs376484859 81072643 - 81072623 81072663 41 TGTTCTGAGAGGGCTGCAGCGGGGGAGGGCTCCCCGCCCCA TGTTCTGAGAGGGCTGCAGCCGGGGAGGGCTCCCCGCCCCA Direct Gain 0 0.962637913770711 0 0.97277295589447 prediction 0.925275827541421 Functional Gain - ZMIZ1 ENSG00000108175 UTR3 Human protein_coding chr10:81072643 chr10:81072643 . . 0 21 hm5C_associated_SNPs_130508 0 0 0 0 0 Nucleus 0 0.500231643921092 0.94554591178894 0.000463287842184856 hm5C_site_50566 DeepMRMD:0.94554591178894;iRNA_m5C:0.000463287842184856 50567 chr6 26158710 26158710 1 + G C LUAD 26158710 + 26158690 26158730 41 CCGTGCGCCTGCTGCTTCCGGGGGAGCTGGCCAAGCACGCC CCGTGCGCCTGCTGCTTCCGCGGGAGCTGGCCAAGCACGCC Direct Gain 0 0.962624055857237 0 0.930046081542969 prediction 0.925248111714474 Functional Gain - HIST1H2BD ENSG00000158373 CDS Human protein_coding chr6:26158710 chr6:26158710 nonsynonymous SNV 0.163 2 21 hm5C_associated_SNPs_130509 0 0 1 0 1 Cytosol 0 0.500231643921092 0.860092163085938 0.000463287842184856 hm5C_site_50567 DeepMRMD:0.860092163085938;iRNA_m5C:0.000463287842184856 50568 chrX 144337578 144337578 1 + G C rs4827782 144337578 + 144337558 144337598 41 TACCTGAAGGATCTTCACAGGAGGATAAAGACGTAGAATTA TACCTGAAGGATCTTCACAGCAGGATAAAGACGTAGAATTA Direct Gain 0 0.96255803911641 0 0.476950168609619 prediction 0.92511607823282 Functional Gain - SPANXN1 ENSG00000203923 UTR3 Human protein_coding chrX:144337578 chrX:144337578 . . 0 21 hm5C_associated_SNPs_130510 0 0 0 0 0 unknown 0 0.500231643921092 0 0.000463287842184856 hm5C_site_50568 DeepMRMD:0;iRNA_m5C:0.000463287842184856 50569 chr17 40172232 40172232 1 + T C rs28372786 40172232 + 40172212 40172252 41 GGCCCCGGGAGGTACGGACCTGGGAGGCGAGGCTCGTCCGG GGCCCCGGGAGGTACGGACCCGGGAGGCGAGGCTCGTCCGG Direct Gain 0 0.962517038366086 0 0.9365074634552 prediction 0.925034076732173 Functional Gain - NKIRAS2 ENSG00000168256 UTR5 Human protein_coding chr17:40172232 chr17:40172232 . . 0 21 hm5C_associated_SNPs_130511 0 0 1 0 1 Cytosol 0 0.500231645449251 0.8730149269104 0.000463290898502056 hm5C_site_50569 DeepMRMD:0.8730149269104;iRNA_m5C:0.000463290898502056 50570 chr1 161090430 161090430 1 + G C CESC 161090430 + 161090410 161090450 41 CAGTGGTGGCCCGCTGCTCTGAGGGGCCAGGCCTCTGCCTT CAGTGGTGGCCCGCTGCTCTCAGGGGCCAGGCCTCTGCCTT Direct Gain 0 0.962497826466824 0 0.988025546073914 prediction 0.924995652933648 Functional Gain - NIT1 ENSG00000158793 CDS Human protein_coding chr1:161090430 chr1:161090430 nonsynonymous SNV 0.923 1 21 hm5C_associated_SNPs_130512 0 0 1 0 0 nucleolus 0 0.500231643921092 0.976051092147828 0.000463287842184856 hm5C_site_50570 DeepMRMD:0.976051092147828;iRNA_m5C:0.000463287842184856 50571 chr19 36124064 36124064 1 + T G LUSC 36124064 - 36124044 36124084 41 ATGGGTGGTCCAGGGGGCCCAGGCAGAGGGGGGCCCACGAG ATGGGTGGTCCAGGGGGCCCCGGCAGAGGGGGGCCCACGAG Direct Gain 0 0.962497747252964 0 0.807447195053101 prediction 0.924995494505928 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124064 chr19:36124064 synonymous SNV . 0 21 hm5C_associated_SNPs_130513 0 0 0 0 0 Ribosome 0 0.5002316438889 0.614894390106202 0.000463287777799914 hm5C_site_50571 DeepMRMD:0.614894390106202;iRNA_m5C:0.000463287777799914 50572 chr10 38404188 38404188 1 + G C rs117193245 38404188 + 38404168 38404208 41 GCGAGGAGCCATGGATATTAGAGGAAAAATTTCCAAGCCAG GCGAGGAGCCATGGATATTACAGGAAAAATTTCCAAGCCAG Direct Gain 0 0.962496010084856 0 0.865256667137146 prediction 0.924992020169713 Functional Gain - ZNF37A ENSG00000075407 CDS Human protein_coding chr10:38404188 chr10:38404188 nonsynonymous SNV 0.908 1 21 hm5C_associated_SNPs_130514 0 0 1 0 1 Cytosol 0 0.500231643921092 0.730513334274292 0.000463287842184856 hm5C_site_50572 DeepMRMD:0.730513334274292;iRNA_m5C:0.000463287842184856 50573 chr17 45822618 45822618 1 + G C LUAD 45822618 + 45822598 45822638 41 CTGGGCGAAGGAGACTCTAAGAGGAGGCGCGTGTCCCCCTA CTGGGCGAAGGAGACTCTAACAGGAGGCGCGTGTCCCCCTA Direct Gain 0 0.962488959333097 0 0.967640936374664 prediction 0.924977918666193 Functional Gain - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45822618 chr17:45822618 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130515 0 0 0 0 0 exosome 0 0.500231643921096 0.935281872749328 0.00046328784219285 hm5C_site_50573 DeepMRMD:0.935281872749328;iRNA_m5C:0.00046328784219285 50574 chr14 77935506 77935506 1 + G C LUAD 77935506 + 77935486 77935526 41 GTCGAGGCATCCCTGCTCCTGAGGAAGAGCGGACGCGACAG GTCGAGGCATCCCTGCTCCTCAGGAAGAGCGGACGCGACAG Direct Gain 0 0.962482691301745 0 0.904945731163025 prediction 0.924965382603489 Functional Gain - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77935506 chr14:77935506 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_130516 0 0 1 0 1 Ribosome 0 0.500231643918785 0.80989146232605 0.000463287837569881 hm5C_site_50574 DeepMRMD:0.80989146232605;iRNA_m5C:0.000463287837569881 50575 chr3 114014505 114014505 1 + T C UCEC 114014505 + 114014485 114014525 41 CACAAGTGACCCAGGTCAACTGGGAGCAGCAGGACCAGCTT CACAAGTGACCCAGGTCAACCGGGAGCAGCAGGACCAGCTT Direct Gain 0 0.962478891572862 0 0.896758913993835 prediction 0.924957783145723 Functional Gain - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114014505 chr3:114014505 nonsynonymous SNV 0.968 5 21 hm5C_associated_SNPs_130517 0 0 0 0 0 exosome 0 0.500231644038156 0.79351782798767 0.000463288076312907 hm5C_site_50575 DeepMRMD:0.79351782798767;iRNA_m5C:0.000463288076312907 50576 chr2 101874329 101874329 1 + C G HNSC 101874329 - 101874309 101874349 41 ATCTGGCGAGGCGTCTTTTTGAAGAGTTCCCGTGGGGGTGC ATCTGGCGAGGCGTCTTTTTCAAGAGTTCCCGTGGGGGTGC Direct Gain 0 0.962368804251086 0 0.924564003944397 prediction 0.924737608502172 Functional Gain - CNOT11 ENSG00000158435 CDS Human protein_coding chr2:101874329 chr2:101874329 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_130518 0 0 0 0 0 Ribosome 0 0.500231643921092 0.849128007888794 0.000463287842184856 hm5C_site_50576 DeepMRMD:0.849128007888794;iRNA_m5C:0.000463287842184856 50577 chrX 102612716 102612716 1 + T C SKCM 102612716 + 102612696 102612736 41 GCCAGAAGAGGAGGAGAAGCTAGAGGAGGAGGCCAAAGCAA GCCAGAAGAGGAGGAGAAGCCAGAGGAGGAGGCCAAAGCAA Direct Gain 0 0.962362758395748 0 0.878423452377319 prediction 0.924725516791497 Functional Gain - TCEAL9 ENSG00000185222 CDS Human protein_coding chrX:102612716 chrX:102612716 nonsynonymous SNV 0.633 0 21 hm5C_associated_SNPs_130519 0 0 1 0 0 Cytosol 0 0.50023164392094 0.756846904754638 0.000463287841880211 hm5C_site_50577 DeepMRMD:0.756846904754638;iRNA_m5C:0.000463287841880211 50578 chr1 181058618 181058618 1 + C G rs1416829 181058618 - 181058598 181058638 41 CGCGCAGCAGCAGGCAGCGCGGGGGGTCGCGGCCGGTGTAC CGCGCAGCAGCAGGCAGCGCCGGGGGTCGCGGCCGGTGTAC Direct Gain 0 0.962357454839918 0 0.972413897514343 prediction 0.924714909679835 Functional Gain - IER5 ENSG00000162783 CDS Human protein_coding chr1:181058618 chr1:181058618 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130520 0 0 0 0 0 chromatin 0 0.50023164063663 0.944827795028686 0.000463281273260563 hm5C_site_50578 DeepMRMD:0.944827795028686;iRNA_m5C:0.000463281273260563 50579 chr20 36560130 36560130 1 + A G LUAD 36560130 - 36560110 36560150 41 ACCACTGGATCTCCAGCGAGTAGGAGGGGGAGCCGCTGCCG ACCACTGGATCTCCAGCGAGCAGGAGGGGGAGCCGCTGCCG Direct Gain 0 0.962351504527131 0 0.899774730205536 prediction 0.924703009054261 Functional Gain - VSTM2L ENSG00000132821 CDS Human protein_coding chr20:36560130 chr20:36560130 nonsynonymous SNV 0.632 3 21 hm5C_associated_SNPs_130521 0 0 0 0 0 exosome 0 0.500231643921129 0.799549460411072 0.000463287842257243 hm5C_site_50579 DeepMRMD:0.799549460411072;iRNA_m5C:0.000463287842257243 50580 chr9 124074734 124074734 1 + G C rs369788495 124074734 + 124074714 124074754 41 GGGCCCGAGTGCACGTGTCTGAGGAGGGCACTGAGCCCGAG GGGCCCGAGTGCACGTGTCTCAGGAGGGCACTGAGCCCGAG Direct Gain 0 0.962349303169492 0 0.945734858512878 prediction 0.924698606338984 Functional Gain - GSN ENSG00000148180 CDS Human protein_coding chr9:124074734 chr9:124074734 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_130522 0 0 1 0 1 Cytosol 0 0.500231598001476 0.891469717025756 0.000463196002952193 hm5C_site_50580 DeepMRMD:0.891469717025756;iRNA_m5C:0.000463196002952193 50581 chr1 181058617 181058617 1 + C G rs548699165 181058617 - 181058597 181058637 41 GCGCAGCAGCAGGCAGCGCGGGGGGTCGCGGCCGGTGTACC GCGCAGCAGCAGGCAGCGCGCGGGGTCGCGGCCGGTGTACC Direct Gain 0 0.962333221518573 0 0.96226555109024 prediction 0.924666443037146 Functional Gain - IER5 ENSG00000162783 CDS Human protein_coding chr1:181058617 chr1:181058617 synonymous SNV . 0 21 hm5C_associated_SNPs_130523 0 0 0 0 0 chromatin 0 0.500231643896344 0.92453110218048 0.000463287792688449 hm5C_site_50581 DeepMRMD:0.92453110218048;iRNA_m5C:0.000463287792688449 50582 chr15 23811313 23811313 1 + T C COAD 23811313 + 23811293 23811333 41 TCTGGTCGGAAGATGGCCACTGAGGGTGGCGTTTCGCCGCC TCTGGTCGGAAGATGGCCACCGAGGGTGGCGTTTCGCCGCC Direct Gain 0 0.96233292168133 0 0.87762987613678 prediction 0.92466584336266 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811313 chr15:23811313 synonymous SNV . 0 21 hm5C_associated_SNPs_130524 0 0 0 0 0 chromatin 0 0.500231798414628 0.75525975227356 0.000463596829256563 hm5C_site_50582 DeepMRMD:0.75525975227356;iRNA_m5C:0.000463596829256563 50583 chr5 140431210 140431210 1 + T C GBM 140431210 + 140431190 140431230 41 GGCCAACGTAGCTAAGGACCTAGGACTGGAGGTAGGGAAGC GGCCAACGTAGCTAAGGACCCAGGACTGGAGGTAGGGAAGC Direct Gain 0 0.962290913247067 0 0.607504904270172 prediction 0.924581826494133 Functional Gain - PCDHB1 ENSG00000171815 CDS Human protein_coding chr5:140431210 chr5:140431210 nonsynonymous SNV 0.993 3 21 hm5C_associated_SNPs_130525 0 0 0 0 0 unknown 0 0.500231643921092 0.215009808540344 0.000463287842184856 hm5C_site_50583 DeepMRMD:0.215009808540344;iRNA_m5C:0.000463287842184856 50584 chr19 5914728 5914728 1 + G C HNSC 5914728 + 5914708 5914748 41 GCAGCGGGACGCTGGATCTGGAGGAGTTCCTTCGGGCGCTG GCAGCGGGACGCTGGATCTGCAGGAGTTCCTTCGGGCGCTG Direct Gain 0 0.96228321484909 0 0.933673143386841 prediction 0.924566429698179 Functional Gain - CAPS ENSG00000105519 CDS Human protein_coding chr19:5914728 chr19:5914728 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_130526 0 0 0 0 1 chromatin 0 0.50023164392813 0.867346286773682 0.000463287856259154 hm5C_site_50584 DeepMRMD:0.867346286773682;iRNA_m5C:0.000463287856259154 50585 chr12 863029 863029 1 + C G LUSC 863029 - 863009 863049 41 GCTGGGCTGGGGCAGGGAAAGAGGAAGGCCGGGAAGCTCCA GCTGGGCTGGGGCAGGGAAACAGGAAGGCCGGGAAGCTCCA Direct Gain 0 0.962281545794341 0 0.902880370616913 prediction 0.924563091588682 Functional Gain - WNK1 ENSG00000060237 CDS Human protein_coding chr12:863029 chr12:863029 nonsynonymous SNV 0.024 0 21 hm5C_associated_SNPs_130527 0 0 0 0 0 Ribosome 0 0.500231643921093 0.805760741233826 0.000463287842185078 hm5C_site_50585 DeepMRMD:0.805760741233826;iRNA_m5C:0.000463287842185078 50586 chr7 100731896 100731896 1 + T C rs61730716 100731896 + 100731876 100731916 41 GAGAAGAGGGAGCCCAGACCTTGGAGGAGGACAGGGCCCAG GAGAAGAGGGAGCCCAGACCCTGGAGGAGGACAGGGCCCAG Direct Gain 0 0.962254461488992 0 0.842147946357727 prediction 0.924508922977985 Functional Gain - TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100731896 chr7:100731896 synonymous SNV . 0 21 hm5C_associated_SNPs_130528 0 0 1 0 0 nucleus 0 0.500231643921092 0.684295892715454 0.000463287842184856 hm5C_site_50586 DeepMRMD:0.684295892715454;iRNA_m5C:0.000463287842184856 50587 chr19 2425184 2425184 1 + A G rs184330957 2425184 - 2425164 2425204 41 CGCGGGCTCGGGCAGGCAGATGGGACGCACCAGGCGGCTGC CGCGGGCTCGGGCAGGCAGACGGGACGCACCAGGCGGCTGC Direct Gain 0 0.962182416951448 0 0.851956486701965 prediction 0.924364833902896 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2425184 chr19:2425184 nonsynonymous SNV 0.470 3 21 hm5C_associated_SNPs_130529 0 0 0 0 0 chromatin 0 0.500231643921092 0.70391297340393 0.000463287842184856 hm5C_site_50587 DeepMRMD:0.70391297340393;iRNA_m5C:0.000463287842184856 50588 chr16 88600079 88600079 1 + C G rs13335396 88600079 - 88600059 88600099 41 GTAGCGCCCTTGGGGGCCCCGGGGAAGAGCCCGGTCTGCGC GTAGCGCCCTTGGGGGCCCCCGGGAAGAGCCCGGTCTGCGC Direct Gain 0 0.962153137618801 0 0.970418155193329 prediction 0.924306275237601 Functional Gain - ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88600079 chr16:88600079 synonymous SNV . 0 21 hm5C_associated_SNPs_130530 0 0 0 0 0 chromatin 0 0.500231643921092 0.940836310386658 0.000463287842184856 hm5C_site_50588 DeepMRMD:0.940836310386658;iRNA_m5C:0.000463287842184856 50589 chr6 106959999 106959999 1 + C G rs1340623 106959999 - 106959979 106960019 41 GCAAATCAGACGCGCCCTTGGGGGGCTGGCTGCGGGCGTTG GCAAATCAGACGCGCCCTTGCGGGGCTGGCTGCGGGCGTTG Direct Gain 0 0.962137921164271 0 0.549984276294708 prediction 0.924275842328542 Functional Gain - CRYBG1 ENSG00000112297 UTR5 Human protein_coding chr6:106959999 chr6:106959999 . . 0 21 hm5C_associated_SNPs_130531 0 0 0 0 0 unknown 0 0.50023164402437 0.0999685525894161 0.000463288048739408 hm5C_site_50589 DeepMRMD:0.0999685525894161;iRNA_m5C:0.000463288048739408 50590 chr1 153749049 153749049 1 + C G LUAD 153749049 - 153749029 153749069 41 CCTGGGCCTGCAGCCCACAGGTGGAGCCCCATGGCTCTCAG CCTGGGCCTGCAGCCCACAGCTGGAGCCCCATGGCTCTCAG Direct Gain 0 0.962136381722691 0 0.814423322677612 prediction 0.924272763445382 Functional Gain - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153749049 chr1:153749049 nonsynonymous SNV 0.543 0 21 hm5C_associated_SNPs_130532 0 0 0 0 0 nucleoplasm 0 0.500231641755985 0.628846645355224 0.000463283511969115 hm5C_site_50590 DeepMRMD:0.628846645355224;iRNA_m5C:0.000463283511969115 50591 chr12 69864170 69864170 1 + A G rs221070 69864170 - 69864150 69864190 41 GCCTCTCTCCGGCCCGAATCTTGGAAAAGCACTTCCGGGGG GCCTCTCTCCGGCCCGAATCCTGGAAAAGCACTTCCGGGGG Direct Gain 0 0.962115574732076 0 0.873720645904541 prediction 0.924231149464152 Functional Gain - FRS2 ENSG00000166225 UTR5 Human protein_coding chr12:69864170 chr12:69864170 . . 0 21 hm5C_associated_SNPs_130533 0 0 0 0 0 Nucleus 0 0.500231643921092 0.747441291809082 0.000463287842184856 hm5C_site_50591 DeepMRMD:0.747441291809082;iRNA_m5C:0.000463287842184856 50592 chr6 139355328 139355328 1 + G C LUAD 139355328 + 139355308 139355348 41 ATCACGAGGTTAACCTCTTAGTGGAGGAAATTCATCGTTTG ATCACGAGGTTAACCTCTTACTGGAGGAAATTCATCGTTTG Direct Gain 0 0.962087026198272 0 0.901332378387451 prediction 0.924174052396544 Functional Gain - ABRACL ENSG00000146386 CDS Human protein_coding chr6:139355328 chr6:139355328 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_130534 0 0 1 0 3 Ribosome 0 0.500231643921093 0.802664756774902 0.000463287842185522 hm5C_site_50592 DeepMRMD:0.802664756774902;iRNA_m5C:0.000463287842185522 50593 chr18 67068491 67068491 1 + A G STAD 67068491 - 67068471 67068511 41 GCTTGACTATGTCGTTAAAGTTGGAGGCCATGGCCAGCGCG GCTTGACTATGTCGTTAAAGCTGGAGGCCATGGCCAGCGCG Direct Gain 0 0.96207669697379 0 0.785103321075439 prediction 0.924153393947579 Functional Gain - DOK6 ENSG00000206052 CDS Human protein_coding chr18:67068491 chr18:67068491 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130535 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921089 0.570206642150878 0.000463287842178639 hm5C_site_50593 DeepMRMD:0.570206642150878;iRNA_m5C:0.000463287842178639 50594 chr3 38307621 38307621 1 + C G rs9822259 38307621 - 38307601 38307641 41 TCCTGCAGGCTGGCATTGGCGGGGGGTGGCCGGAACATGAG TCCTGCAGGCTGGCATTGGCCGGGGGTGGCCGGAACATGAG Direct Gain 0 0.962072358429938 0 0.933446884155273 prediction 0.924144716859877 Functional Gain - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38307621 chr3:38307621 synonymous SNV . 0 21 hm5C_associated_SNPs_130536 0 0 0 0 0 chromatin 0 0.500231643921092 0.866893768310546 0.000463287842184856 hm5C_site_50594 DeepMRMD:0.866893768310546;iRNA_m5C:0.000463287842184856 50595 chr22 41612201 41612201 1 + T C UCEC 41612201 + 41612181 41612221 41 GGCTGCCTGGTCTGCCAAAATTGGAGCCTTCCTCCACTCTC GGCTGCCTGGTCTGCCAAAACTGGAGCCTTCCTCCACTCTC Direct Gain 0 0.962064263585367 0 0.614293694496155 prediction 0.924128527170734 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41612201 chr22:41612201 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130537 0 0 1 0 2 Ribosome 0 0.500231643921199 0.22858738899231 0.000463287842397797 hm5C_site_50595 DeepMRMD:0.22858738899231;iRNA_m5C:0.000463287842397797 50596 chrX 106845428 106845428 1 + A G UCEC 106845428 - 106845408 106845448 41 GCGCATCAGTTTCCTGTAATTGGGAGCTCCCAGACACTCGC GCGCATCAGTTTCCTGTAATCGGGAGCTCCCAGACACTCGC Direct Gain 0 0.962007106269204 0 0.971741020679474 prediction 0.924014212538408 Functional Gain - FRMPD3 ENSG00000147234 CDS Human protein_coding chrX:106845428 chrX:106845428 nonsynonymous SNV 0.961 1 21 hm5C_associated_SNPs_130538 0 0 0 0 0 exosome 0 0.50023160861227 0.943482041358948 0.00046321722454068 hm5C_site_50596 DeepMRMD:0.943482041358948;iRNA_m5C:0.00046321722454068 50597 chr2 220493926 220493926 1 + A G UCEC 220493926 - 220493906 220493946 41 GGGGCAGCCGCCGCAGCTTGTGGGGTGGAGGCAGGCGCGCT GGGGCAGCCGCCGCAGCTTGCGGGGTGGAGGCAGGCGCGCT Direct Gain 0 0.961986030989571 0 0.964260697364807 prediction 0.923972061979142 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220493926 chr2:220493926 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130539 0 0 0 0 0 Cytosol 0 0.500231643921092 0.928521394729614 0.000463287842184856 hm5C_site_50597 DeepMRMD:0.928521394729614;iRNA_m5C:0.000463287842184856 50598 chr2 80136829 80136829 1 + C G LUSC 80136829 - 80136809 80136849 41 GCCGGTCGTCTCGCGTGCAGGAGGAGTCGGCCATCAGCGCT GCCGGTCGTCTCGCGTGCAGCAGGAGTCGGCCATCAGCGCT Direct Gain 0 0.961869849095299 0 0.890873610973358 prediction 0.923739698190598 Functional Gain - CTNNA2 ENSG00000066032 CDS Human protein_coding chr2:80136829 chr2:80136829 nonsynonymous SNV 0.988 4 21 hm5C_associated_SNPs_130540 0 0 0 0 0 nucleoplasm 0 0.500340628647666 0.781747221946716 0.000681257295332971 hm5C_site_50598 DeepMRMD:0.781747221946716;iRNA_m5C:0.000681257295332971 50599 chr2 62450285 62450285 1 + C G rs139485156 62450285 - 62450265 62450305 41 AGGGCCAGGTGGCCGGAGTAGAGGAACCCCCCTCCCCCTGC AGGGCCAGGTGGCCGGAGTACAGGAACCCCCCTCCCCCTGC Direct Gain 0 0.961865608219126 0 0.851643085479736 prediction 0.923731216438253 Functional Gain - B3GNT2 ENSG00000170340 CDS Human protein_coding chr2:62450285 chr2:62450285 synonymous SNV . 0 21 hm5C_associated_SNPs_130541 0 0 0 0 0 Ribosome 0 0.500231643921152 0.703286170959472 0.000463287842304094 hm5C_site_50599 DeepMRMD:0.703286170959472;iRNA_m5C:0.000463287842304094 50600 chr20 55012466 55012466 1 + G C HNSC 55012466 + 55012446 55012486 41 AAGAAGCTCCTGCCAGCTCAGAGGAGACCTATCAGGTGCCC AAGAAGCTCCTGCCAGCTCACAGGAGACCTATCAGGTGCCC Direct Gain 0 0.961853518418299 0 0.927837371826172 prediction 0.923707036836598 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55012466 chr20:55012466 nonsynonymous SNV 0.075 0 21 hm5C_associated_SNPs_130542 0 0 0 0 1 chromatin 0 0.500231643892169 0.855674743652344 0.00046328778433824 hm5C_site_50600 DeepMRMD:0.855674743652344;iRNA_m5C:0.00046328778433824 50601 chr21 31964916 31964916 1 + A C rs9305426 31964916 + 31964896 31964936 41 CGGAGGCCTGGGCTTTGGCTATGGAGGCCTGGACTGTGGCT CGGAGGCCTGGGCTTTGGCTCTGGAGGCCTGGACTGTGGCT Direct Gain 0 0.961839169171253 0 0.770021915435791 prediction 0.923678338342507 Functional Gain - KRTAP6-3 ENSG00000212938 CDS Human protein_coding chr21:31964916 chr21:31964916 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_130543 0 0 0 0 0 unknown 0 0.500231643921092 0.540043830871582 0.000463287842184856 hm5C_site_50601 DeepMRMD:0.540043830871582;iRNA_m5C:0.000463287842184856 50602 chr16 6069793 6069793 1 + C G rs186572411 6069793 - 6069773 6069813 41 CCTGGGCGCGGCGAGGGTCCGGACAGGCGGGGACCCTGGCG CCTGGGCGCGGCGAGGGTCCCGACAGGCGGGGACCCTGGCG Direct Gain 0 0.961797319939972 0 0.822594940662384 prediction 0.923594639879945 Functional Gain - RBFOX1 ENSG00000260411 ncRNA_intronic Human lincRNA chr16:6069793 chr16:6069793 . . 0 21 hm5C_associated_SNPs_130544 0 0 0 0 0 Cytoplasm 0 0.500231639618704 0.645189881324768 0.000463279237407521 hm5C_site_50602 DeepMRMD:0.645189881324768;iRNA_m5C:0.000463279237407521 50603 chr7 150439900 150439900 1 + T C CESC 150439900 + 150439880 150439920 41 TCCACAGCAATGACCTCTTCTTGGATGCCCAGCTGCTCCAA TCCACAGCAATGACCTCTTCCTGGATGCCCAGCTGCTCCAA Direct Gain 0 0.96177667545878 0 0.940438389778137 prediction 0.923553350917561 Functional Gain - GIMAP1-GIMAP5;GIMAP5 ENSG00000196329 CDS Human protein_coding chr7:150439900 chr7:150439900 synonymous SNV . 0 21 hm5C_associated_SNPs_130545 0 0 0 0 0 unknown 0 0.500228461643698 0.880876779556274 0.000456923287396993 hm5C_site_50603 DeepMRMD:0.880876779556274;iRNA_m5C:0.000456923287396993 50604 chr10 94449720 94449720 1 + G C rs558170145 94449720 + 94449700 94449740 41 GCGCGGGCCAGCAGCTCTGCGAGGGGCCGGAGCGCGGCGGA GCGCGGGCCAGCAGCTCTGCCAGGGGCCGGAGCGCGGCGGA Direct Gain 0 0.961731182482546 0 0.960467219352722 prediction 0.923462364965091 Functional Gain - HHEX ENSG00000152804 UTR5 Human protein_coding chr10:94449720 chr10:94449720 . . 0 21 hm5C_associated_SNPs_130546 0 0 1 0 0 cytosol 0 0.50017419682522 0.920934438705444 0.00034839365044026 hm5C_site_50604 DeepMRMD:0.920934438705444;iRNA_m5C:0.00034839365044026 50605 chr17 56160842 56160842 1 + T C rs2533003 56160842 + 56160822 56160862 41 GGGCGGGCGGGCGGGCGGCGTGAGGCGGAGCGCGGGCGGCC GGGCGGGCGGGCGGGCGGCGCGAGGCGGAGCGCGGGCGGCC Direct Gain 0 0.96173084140091 0 0.875787436962128 prediction 0.92346168280182 Functional Gain - DYNLL2 ENSG00000264364 UTR5 Human protein_coding chr17:56160842 chr17:56160842 . . 0 21 hm5C_associated_SNPs_130547 0 0 1 0 0 Ribosome 0 0.500231643921088 0.751574873924256 0.000463287842175975 hm5C_site_50605 DeepMRMD:0.751574873924256;iRNA_m5C:0.000463287842175975 50606 chr1 176762730 176762730 1 + C G LUAD 176762730 - 176762710 176762750 41 GGTAGCATCACGGGGTCACTGGGGGGGATTACACACAATGG GGTAGCATCACGGGGTCACTCGGGGGGATTACACACAATGG Direct Gain 0 0.961699491014756 0 0.968973994255066 prediction 0.923398982029511 Functional Gain - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176762730 chr1:176762730 synonymous SNV . 0 21 hm5C_associated_SNPs_130548 0 0 0 0 0 Cytosol 0 0.500231643921088 0.937947988510132 0.000463287842176863 hm5C_site_50606 DeepMRMD:0.937947988510132;iRNA_m5C:0.000463287842176863 50607 chr14 63671683 63671683 1 + G C HNSC 63671683 + 63671663 63671703 41 GTGGTGGGGGACGGTGCCGTGGGGAAAACCTGCCTGCTGAT GTGGTGGGGGACGGTGCCGTCGGGAAAACCTGCCTGCTGAT Direct Gain 0 0.961691864896732 0 0.978059411048889 prediction 0.923383729793464 Functional Gain - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63671683 chr14:63671683 synonymous SNV . 0 21 hm5C_associated_SNPs_130549 0 0 0 0 1 Cytosol 0 0.500231643921092 0.956118822097778 0.000463287842184856 hm5C_site_50607 DeepMRMD:0.956118822097778;iRNA_m5C:0.000463287842184856 50608 chr1 154956408 154956408 1 + G C BLCA 154956408 + 154956388 154956428 41 CGTGCTTGCGACCCCTATTTGGGGGTCTGGGTGGCTACTGG CGTGCTTGCGACCCCTATTTCGGGGTCTGGGTGGCTACTGG Direct Gain 0 0.961688085995316 0 0.955638408660889 prediction 0.923376171990631 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154956408 chr1:154956408 nonsynonymous SNV 0.687 0 21 hm5C_associated_SNPs_130550 0 0 1 0 1 Cytosol 0 0.500231643921792 0.911276817321778 0.000463287843584848 hm5C_site_50608 DeepMRMD:0.911276817321778;iRNA_m5C:0.000463287843584848 50609 chr15 55611485 55611485 1 + G C LUSC 55611485 + 55611465 55611505 41 GCAAGTGCGGAATGGAGCCGGGGGGCGGAGATGCCAGCCTC GCAAGTGCGGAATGGAGCCGCGGGGCGGAGATGCCAGCCTC Direct Gain 0 0.961678684695692 0 0.888022541999817 prediction 0.923357369391385 Functional Gain - PIGB ENSG00000069943 CDS Human protein_coding chr15:55611485 chr15:55611485 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130551 0 0 0 0 0 Endoplasmic reticulum 0 0.500231658527977 0.776045083999634 0.000463317055954704 hm5C_site_50609 DeepMRMD:0.776045083999634;iRNA_m5C:0.000463317055954704 50610 chr14 71374232 71374232 1 + G C rs565675471 71374232 + 71374212 71374252 41 GGGGTCGCGGCGGCGGCAGTGGGGGCGCTGGCGGGCCGCGG GGGGTCGCGGCGGCGGCAGTCGGGGCGCTGGCGGGCCGCGG Direct Gain 0 0.96165944372854 0 0.996509552001953 prediction 0.923318887457081 Functional Gain - PCNX1 ENSG00000100731 UTR5 Human protein_coding chr14:71374232 chr14:71374232 . . 0 21 hm5C_associated_SNPs_130552 0 0 1 0 0 Endoplasmic reticulum 0 0.50023164392108 0.993019104003906 0.000463287842159987 hm5C_site_50610 DeepMRMD:0.993019104003906;iRNA_m5C:0.000463287842159987 50611 chr15 85046479 85046479 1 + T C rs544983284 85046479 + 85046459 85046499 41 CCGGTGAGGGTGCTGGGCATTGGGAGGTGGCGGGGAGGGCG CCGGTGAGGGTGCTGGGCATCGGGAGGTGGCGGGGAGGGCG Direct Gain 0 0.961640893339185 0 0.963479220867157 prediction 0.92328178667837 Functional Gain - DNM1P41 ENSG00000259551 downstream Human lincRNA chr15:85046479 chr15:85046479 . . 0 21 hm5C_associated_SNPs_130553 0 0 0 0 0 unknown 0 0.500231643921092 0.926958441734314 0.000463287842184856 hm5C_site_50611 DeepMRMD:0.926958441734314;iRNA_m5C:0.000463287842184856 50612 chr12 102036345 102036345 1 + G C BLCA 102036345 + 102036325 102036365 41 GACTCAAGCGCATGCGCAGAGAGGAGAAGAAGAGCGCAGGT GACTCAAGCGCATGCGCAGACAGGAGAAGAAGAGCGCAGGT Direct Gain 0 0.961629621227168 0 0.775073409080505 prediction 0.923259242454336 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102036345 chr12:102036345 nonsynonymous SNV 0.949 0 21 hm5C_associated_SNPs_130554 0 0 0 0 1 nucleus 0 0.500231418922343 0.55014681816101 0.000462837844686037 hm5C_site_50612 DeepMRMD:0.55014681816101;iRNA_m5C:0.000462837844686037 50613 chr12 65859801 65859801 1 + A C rs139239668 65859801 + 65859781 65859821 41 GCCACAGTGTTGAGGTAGACAAGGAGGATCAGTGAGAGGCC GCCACAGTGTTGAGGTAGACCAGGAGGATCAGTGAGAGGCC Direct Gain 0 0.961621134243937 0 0.81629478931427 prediction 0.923242268487874 Functional Gain - MSRB3 ENSG00000174099 UTR3 Human protein_coding chr12:65859801 chr12:65859801 . . 0 21 hm5C_associated_SNPs_130555 0 0 0 0 0 Nucleus 0 0.500234305963935 0.63258957862854 0.000468611927870732 hm5C_site_50613 DeepMRMD:0.63258957862854;iRNA_m5C:0.000468611927870732 50614 chr10 115804211 115804211 1 + T C STAD 115804211 + 115804191 115804231 41 GGCCAGCGCCGACCTGGTCATGGGGCTGCTGGTGGTGCCGT GGCCAGCGCCGACCTGGTCACGGGGCTGCTGGTGGTGCCGT Direct Gain 0 0.961611933901281 0 0.868487060070038 prediction 0.923223867802563 Functional Gain - ADRB1 ENSG00000043591 CDS Human protein_coding chr10:115804211 chr10:115804211 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130556 0 0 0 0 0 Nucleus 0 0.500231726406818 0.736974120140076 0.000463452813636245 hm5C_site_50614 DeepMRMD:0.736974120140076;iRNA_m5C:0.000463452813636245 50615 chr7 158649366 158649366 1 + G C rs571952764 158649366 + 158649346 158649386 41 GGGGCACAGGTGGCCTCTTCGGGGTGGACCGCGCCTGGCCG GGGGCACAGGTGGCCTCTTCCGGGTGGACCGCGCCTGGCCG Direct Gain 0 0.961602762894195 0 0.969645977020264 prediction 0.92320552578839 Functional Gain - WDR60 ENSG00000126870 UTR5 Human protein_coding chr7:158649366 chr7:158649366 . . 0 21 hm5C_associated_SNPs_130557 0 0 1 0 1 Nucleus 0 0.500231643921146 0.939291954040528 0.000463287842291216 hm5C_site_50615 DeepMRMD:0.939291954040528;iRNA_m5C:0.000463287842291216 50616 chr11 117262997 117262997 1 + C G rs138384561 117262997 - 117262977 117263017 41 CCCGGTGCTTGGCCTCCAATGAGGAGCAGAGCCGCTCCAGC CCCGGTGCTTGGCCTCCAATCAGGAGCAGAGCCGCTCCAGC Direct Gain 0 0.961600157535793 0 0.977066278457642 prediction 0.923200315071586 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117262997 chr11:117262997 stopgain 0.537 0 21 hm5C_associated_SNPs_130558 0 0 0 0 0 Cytosol 0 0.500231643921122 0.954132556915284 0.000463287842244142 hm5C_site_50616 DeepMRMD:0.954132556915284;iRNA_m5C:0.000463287842244142 50617 chr1 33237483 33237483 1 + A G UCEC 33237483 - 33237463 33237503 41 GGGGCCGATGGCCCCAGTGCTGGGGTGGGAGCCCCTCCTGG GGGGCCGATGGCCCCAGTGCCGGGGTGGGAGCCCCTCCTGG Direct Gain 0 0.961599525647875 0 0.967059373855591 prediction 0.92319905129575 Functional Gain - KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33237483 chr1:33237483 synonymous SNV . 0 21 hm5C_associated_SNPs_130559 0 0 1 0 0 Ribosome 0 0.500231643921596 0.934118747711182 0.000463287843192939 hm5C_site_50617 DeepMRMD:0.934118747711182;iRNA_m5C:0.000463287843192939 50618 chr11 60609773 60609773 1 + C G LUSC 60609773 - 60609753 60609793 41 TTGTCTTCGGCGGCCTTTCGGGGGACCCCAGGCCAGCCCGC TTGTCTTCGGCGGCCTTTCGCGGGACCCCAGGCCAGCCCGC Direct Gain 0 0.96158879581979 0 0.983070850372314 prediction 0.92317759163958 Functional Gain - CCDC86 ENSG00000110104 CDS Human protein_coding chr11:60609773 chr11:60609773 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_130560 0 0 0 0 0 Ribosome 0 0.500231643921092 0.966141700744628 0.000463287842184856 hm5C_site_50618 DeepMRMD:0.966141700744628;iRNA_m5C:0.000463287842184856 50619 chr8 144297984 144297984 1 + G C rs563341575 144297984 + 144297964 144298004 41 ATGCGGAGGGGCGGGGCGGGGGGGGGCTGGGGGGACAGGCA ATGCGGAGGGGCGGGGCGGGCGGGGGCTGGGGGGACAGGCA Direct Gain 0 0.961568694149496 0 0.954229950904846 prediction 0.923137388298993 Functional Gain - GPIHBP1 ENSG00000182851 UTR3 Human other chr8:144297984 chr8:144297984 . . 0 21 hm5C_associated_SNPs_130561 0 0 0 0 0 exosome 0 0.500231644145883 0.908459901809692 0.000463288291766784 hm5C_site_50619 DeepMRMD:0.908459901809692;iRNA_m5C:0.000463288291766784 50620 chr17 4693229 4693229 1 + C G CESC 4693229 - 4693209 4693249 41 CGAGCTCCGGGTCGGGTCCCGGGGGGCCGCCCCCGGCTGCT CGAGCTCCGGGTCGGGTCCCCGGGGGCCGCCCCCGGCTGCT Direct Gain 0 0.961550492166136 0 0.970044851303101 prediction 0.923100984332272 Functional Gain - GLTPD2 ENSG00000182327 CDS Human protein_coding chr17:4693229 chr17:4693229 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130562 0 0 0 0 0 nucleus 0 0.500231643921092 0.940089702606202 0.00046328784218419 hm5C_site_50620 DeepMRMD:0.940089702606202;iRNA_m5C:0.00046328784218419 50621 chr11 122756780 122756780 1 + G C BRCA 122756780 + 122756760 122756800 41 GTATGGAGCCCGACAGCTTAGACGAGGAGGAAAGCCCTCGA GTATGGAGCCCGACAGCTTACACGAGGAGGAAAGCCCTCGA Direct Gain 0 0.961538107658753 0 0.358969449996948 prediction 0.923076215317506 Functional Gain - C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122756780 chr11:122756780 nonsynonymous SNV 0.941 3 21 hm5C_associated_SNPs_130563 0 0 0 0 0 exosome 0 0.500231643920719 0 0.000463287841438786 hm5C_site_50621 DeepMRMD:0;iRNA_m5C:0.000463287841438786 50622 chr2 20647308 20647308 1 + G C ACC 20647308 + 20647288 20647328 41 TGCTGATCGTGTTCAGTAAGGACGAGTTCCCCGAGGTGTAC TGCTGATCGTGTTCAGTAAGCACGAGTTCCCCGAGGTGTAC Direct Gain 0 0.961535950384011 0 0.330379366874695 prediction 0.923071900768022 Functional Gain - RHOB ENSG00000143878 CDS Human protein_coding chr2:20647308 chr2:20647308 nonsynonymous SNV 0.995 2 21 hm5C_associated_SNPs_130564 0 0 1 0 0 Cytosol 0 0.500231646608019 0 0.000463293216037775 hm5C_site_50622 DeepMRMD:0;iRNA_m5C:0.000463293216037775 50623 chr1 176671822 176671822 1 + C G BRCA 176671822 - 176671802 176671842 41 AGCTCCATGAATGTGGTTCAGAGGAGGCGAAGCTTCTCCCA AGCTCCATGAATGTGGTTCACAGGAGGCGAAGCTTCTCCCA Direct Gain 0 0.961489179745175 0 0.780798494815826 prediction 0.92297835949035 Functional Gain - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176671822 chr1:176671822 nonsynonymous SNV 0.995 2 21 hm5C_associated_SNPs_130565 0 0 0 0 0 Cytosol 0 0.50023152272749 0.561596989631652 0.000463045454979438 hm5C_site_50623 DeepMRMD:0.561596989631652;iRNA_m5C:0.000463045454979438 50624 chr3 183777963 183777963 1 + A C LUSC 183777963 + 183777943 183777983 41 AAGGAGCCGGGGGAGTTAGCAGGGAAGAAGCTGGGACCCAG AAGGAGCCGGGGGAGTTAGCCGGGAAGAAGCTGGGACCCAG Direct Gain 0 0.961464858438577 0 0.957367658615112 prediction 0.922929716877153 Functional Gain - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183777963 chr3:183777963 synonymous SNV . 0 21 hm5C_associated_SNPs_130566 0 0 0 0 1 exosome 0 0.500231643921092 0.914735317230224 0.000463287842184856 hm5C_site_50624 DeepMRMD:0.914735317230224;iRNA_m5C:0.000463287842184856 50625 chr6 71998778 71998778 1 + T C rs112585190 71998778 + 71998758 71998798 41 GCGAGGGCCCGGGGCAGGAGTCCGAGCAGCCCGCGCAGCCC GCGAGGGCCCGGGGCAGGAGCCCGAGCAGCCCGCGCAGCCC Direct Gain 0 0.961455481673331 0 0.835113704204559 prediction 0.922910963346662 Functional Gain - OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:71998778 chr6:71998778 nonsynonymous SNV 0.568 0 21 hm5C_associated_SNPs_130567 0 0 0 0 1 exosome 0 0.500231643921092 0.670227408409118 0.000463287842184856 hm5C_site_50625 DeepMRMD:0.670227408409118;iRNA_m5C:0.000463287842184856 50626 chr16 1270949 1270949 1 + C G BLCA 1270949 - 1270929 1270969 41 CCTGGGGCAGGGGTGGCTGAGGGGGACCCTGGTTTCTCCAG CCTGGGGCAGGGGTGGCTGACGGGGACCCTGGTTTCTCCAG Direct Gain 0 0.961450392381186 0 0.964641094207764 prediction 0.922900784762373 Functional Gain - CACNA1H ENSG00000196557 CDS Human protein_coding chr16:1270949 chr16:1270949 synonymous SNV . 0 21 hm5C_associated_SNPs_130568 0 0 0 0 0 nucleolus 0 0.500231643921092 0.929282188415528 0.000463287842184856 hm5C_site_50626 DeepMRMD:0.929282188415528;iRNA_m5C:0.000463287842184856 50627 chr8 22428629 22428629 1 + C G STAD 22428629 - 22428609 22428649 41 GCTGGGCTGCGCAGGGCTGAGGGGGAGCTGGGGTGACGGGC GCTGGGCTGCGCAGGGCTGACGGGGAGCTGGGGTGACGGGC Direct Gain 0 0.961435022508311 0 0.973623812198639 prediction 0.922870045016623 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22428629 chr8:22428629 synonymous SNV . 0 21 hm5C_associated_SNPs_130569 0 0 0 0 0 Cytosol 0 0.500231643921092 0.947247624397278 0.000463287842184856 hm5C_site_50627 DeepMRMD:0.947247624397278;iRNA_m5C:0.000463287842184856 50628 chr17 39383322 39383322 1 + A G rs200622888 39383322 - 39383302 39383342 41 GGCAGCAGGGCTGGCAGCAGTTGGAGCCACAGCTCTGGTTT GGCAGCAGGGCTGGCAGCAGCTGGAGCCACAGCTCTGGTTT Direct Gain 0 0.961433733643975 0 0.937907338142395 prediction 0.922867467287949 Functional Gain - KRTAP9-2 ENSG00000239886 CDS Human protein_coding chr17:39383322 chr17:39383322 nonsynonymous SNV 0.929 0 21 hm5C_associated_SNPs_130570 0 0 0 0 0 unknown 0 0.500231643760554 0.87581467628479 0.000463287521107469 hm5C_site_50628 DeepMRMD:0.87581467628479;iRNA_m5C:0.000463287521107469 50629 chr9 37426604 37426604 1 + A G rs186922220 37426604 - 37426584 37426624 41 AACCGGCGGCAGGTGGTAAGTAGCAGGGAGACTGCGAGTTC AACCGGCGGCAGGTGGTAAGCAGCAGGGAGACTGCGAGTTC Direct Gain 0 0.961425025087518 0 0.694133400917053 prediction 0.922850050175037 Functional Gain - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37426604 chr9:37426604 synonymous SNV . 0 21 hm5C_associated_SNPs_130571 0 0 0 0 0 Ribosome 0 0.500231643921095 0.388266801834106 0.000463287842190185 hm5C_site_50629 DeepMRMD:0.388266801834106;iRNA_m5C:0.000463287842190185 50630 chr19 10225358 10225358 1 + A G PRAD 10225358 - 10225338 10225378 41 TTTAGGGGCGGCTGTGGCATTGAGGGGCAGGGCTTGGCCAG TTTAGGGGCGGCTGTGGCATCGAGGGGCAGGGCTTGGCCAG Direct Gain 0 0.961390850618548 0 0.980031430721283 prediction 0.922781701237097 Functional Gain - P2RY11;PPAN-P2RY11 ENSG00000130810;ENSG00000243207;ENSG00000244165 CDS Human other chr19:10225358 chr19:10225358 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_130572 0 0 0 0 0 unknown 0 0.500231643921092 0.960062861442566 0.000463287842184856 hm5C_site_50630 DeepMRMD:0.960062861442566;iRNA_m5C:0.000463287842184856 50631 chr1 156883024 156883024 1 + A G BLCA 156883024 - 156883004 156883044 41 CTGCGACAGGGTGTGGTAGCTGGGGTTGGAGTAGTAGTGAC CTGCGACAGGGTGTGGTAGCCGGGGTTGGAGTAGTAGTGAC Direct Gain 0 0.961352170395584 0 0.929383933544159 prediction 0.922704340791167 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883024 chr1:156883024 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_130573 0 0 0 0 0 cytosol 0 0.500231643921092 0.858767867088318 0.000463287842184856 hm5C_site_50631 DeepMRMD:0.858767867088318;iRNA_m5C:0.000463287842184856 50632 chr15 31233883 31233883 1 + A G rs201242225 31233883 - 31233863 31233903 41 GGCCCCCTGGAGGCCTGCTATGGGGAGCTGGGCCAGAGCAG GGCCCCCTGGAGGCCTGCTACGGGGAGCTGGGCCAGAGCAG Direct Gain 0 0.961346546618018 0 0.917999029159546 prediction 0.922693093236036 Functional Gain - MTMR10 ENSG00000166912 CDS Human protein_coding chr15:31233883 chr15:31233883 synonymous SNV . 0 21 hm5C_associated_SNPs_130574 0 0 0 0 0 Cytosol 0 0.500231643921092 0.835998058319092 0.000463287842184856 hm5C_site_50632 DeepMRMD:0.835998058319092;iRNA_m5C:0.000463287842184856 50633 chr19 16631001 16631001 1 + T C UCEC 16631001 + 16630981 16631021 41 CGTGACCGGCGTCTTCTTCCTGGGGAGTACGACTTGGACCG CGTGACCGGCGTCTTCTTCCCGGGGAGTACGACTTGGACCG Direct Gain 0 0.961339764812615 0 0.945703268051147 prediction 0.92267952962523 Functional Gain - CHERP ENSG00000085872 CDS Human protein_coding chr19:16631001 chr19:16631001 synonymous SNV . 0 21 hm5C_associated_SNPs_130575 0 0 0 0 1 Ribosome 0 0.500231643921903 0.891406536102294 0.000463287843806448 hm5C_site_50633 DeepMRMD:0.891406536102294;iRNA_m5C:0.000463287843806448 50634 chr22 41574615 41574615 1 + T G UCEC 41574615 - 41574595 41574635 41 ACTTGATTGGAGAGAGAATTAGGGATCTGCTGGCCTTGTAG ACTTGATTGGAGAGAGAATTCGGGATCTGCTGGCCTTGTAG Direct Gain 0 0.961265259449212 0 0.950308620929718 prediction 0.922530518898425 Functional Gain - EP300 ENSG00000100393 CDS Human protein_coding chr22:41574615 chr22:41574615 synonymous SNV . 0 21 hm5C_associated_SNPs_130576 0 0 1 0 0 Cytosol 0 0.500231643921092 0.900617241859436 0.000463287842184856 hm5C_site_50634 DeepMRMD:0.900617241859436;iRNA_m5C:0.000463287842184856 50635 chr8 10388993 10388993 1 + C G LUAD 10388993 - 10388973 10389013 41 ATGTGGCAGGGCCGGGCTGCGTGGGGAGGCAGATGGGCACC ATGTGGCAGGGCCGGGCTGCCTGGGGAGGCAGATGGGCACC Direct Gain 0 0.961244042762206 0 0.803583920001984 prediction 0.922488085524412 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10388993 chr8:10388993 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_130577 0 0 0 0 0 exosome 0 0.500231642993799 0.607167840003968 0.000463285987597262 hm5C_site_50635 DeepMRMD:0.607167840003968;iRNA_m5C:0.000463285987597262 50636 chr18 624935 624935 1 + T C GBM 624935 + 624915 624955 41 AAGGCTATGCCGGGAGTCTTTGGCAGATTCCTGGGGTGAAT AAGGCTATGCCGGGAGTCTTCGGCAGATTCCTGGGGTGAAT Direct Gain 0 0.961242237680244 0 0.888649046421051 prediction 0.922484475360487 Functional Gain - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:624935 chr18:624935 nonsynonymous SNV 0.984 0 21 hm5C_associated_SNPs_130578 0 0 0 0 2 cytosol 0 0.500231643921087 0.777298092842102 0.000463287842174642 hm5C_site_50636 DeepMRMD:0.777298092842102;iRNA_m5C:0.000463287842174642 50637 chr11 6942934 6942934 1 + T C rs150886951 6942934 + 6942914 6942954 41 TCCCTGATTCTTGGTTCTTATTGGAATATTATCTCCACTGT TCCCTGATTCTTGGTTCTTACTGGAATATTATCTCCACTGT Direct Gain 0 0.96123570265704 0 0.726344525814056 prediction 0.922471405314081 Functional Gain - OR2D3 ENSG00000178358 CDS Human protein_coding chr11:6942934 chr11:6942934 synonymous SNV . 0 21 hm5C_associated_SNPs_130579 0 0 0 0 0 unknown 0 0.500231645177275 0.452689051628112 0.000463290354550949 hm5C_site_50637 DeepMRMD:0.452689051628112;iRNA_m5C:0.000463290354550949 50638 chr19 35550704 35550704 1 + C G rs79831835 35550704 - 35550684 35550724 41 TCCGAGGGCCCCCAGTACCTGAGGAAGCCCATCTCCTCGCA TCCGAGGGCCCCCAGTACCTCAGGAAGCCCATCTCCTCGCA Direct Gain 0 0.961225547585003 0 0.792840003967285 prediction 0.922451095170006 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35550704 chr19:35550704 synonymous SNV . 0 21 hm5C_associated_SNPs_130580 0 0 0 0 0 cytosol 0 0.500231646079495 0.58568000793457 0.000463292158989548 hm5C_site_50638 DeepMRMD:0.58568000793457;iRNA_m5C:0.000463292158989548 50639 chr19 4157105 4157105 1 + C G rs143021454 4157105 - 4157085 4157125 41 GGGTCGGAGGGGAGGTCTTCGGAGATGCCACTATCACTGCC GGGTCGGAGGGGAGGTCTTCCGAGATGCCACTATCACTGCC Direct Gain 0 0.961195093407902 0 0.843890428543091 prediction 0.922390186815804 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4157105 chr19:4157105 synonymous SNV . 0 21 hm5C_associated_SNPs_130581 0 0 0 0 0 exosome 0 0.500232179675681 0.687780857086182 0.000464359351362909 hm5C_site_50639 DeepMRMD:0.687780857086182;iRNA_m5C:0.000464359351362909 50640 chr18 9285131 9285131 1 + T C rs143377858 9285131 + 9285111 9285151 41 GCAGGAGAATGGCGTGAGCCTGGGAGGCGGAGCTTGCAGTG GCAGGAGAATGGCGTGAGCCCGGGAGGCGGAGCTTGCAGTG Direct Gain 0 0.961193556285924 0 0.911101520061493 prediction 0.922387112571848 Functional Gain - ANKRD12 ENSG00000101745 UTR3 Human protein_coding chr18:9285131 chr18:9285131 . . 0 21 hm5C_associated_SNPs_130582 0 0 0 0 0 Cytosol 0 0.500231643916892 0.822203040122986 0.000463287833784687 hm5C_site_50640 DeepMRMD:0.822203040122986;iRNA_m5C:0.000463287833784687 50641 chr19 52954507 52954507 1 + T C rs324104 52954507 + 52954487 52954527 41 TGGCGCGCGTCCGGAGGTGCTGAGGAGCCAACCGGCCCAAA TGGCGCGCGTCCGGAGGTGCCGAGGAGCCAACCGGCCCAAA Direct Gain 0 0.961183374705093 0 0.956287622451782 prediction 0.922366749410186 Functional Gain - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52954507 chr19:52954507 synonymous SNV . 0 21 hm5C_associated_SNPs_130583 0 0 0 0 1 exosome 0 0.500231643921093 0.912575244903564 0.000463287842185522 hm5C_site_50641 DeepMRMD:0.912575244903564;iRNA_m5C:0.000463287842185522 50642 chr5 148695757 148695757 1 + G C LUSC 148695757 + 148695737 148695777 41 GCAGAACTGAAGGGCTCAATGAGCAGGGCTGCGGGCCGCAA GCAGAACTGAAGGGCTCAATCAGCAGGGCTGCGGGCCGCAA Direct Gain 0 0.961180980519398 0 0.943068385124207 prediction 0.922361961038796 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148695757 chr5:148695757 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_130584 0 0 1 0 1 exosome 0 0.500231643921709 0.886136770248414 0.000463287843417204 hm5C_site_50642 DeepMRMD:0.886136770248414;iRNA_m5C:0.000463287843417204 50643 chr12 6936480 6936480 1 + T C rs76136313 6936480 + 6936460 6936500 41 GGGGAGACGGGCGCTAGATTTGGGGCTCAGAAGGCCCTGCT GGGGAGACGGGCGCTAGATTCGGGGCTCAGAAGGCCCTGCT Direct Gain 0 0.961171288641597 0 0.989203989505768 prediction 0.922342577283194 Functional Gain - GPR162 ENSG00000250510 UTR3 Human protein_coding chr12:6936480 chr12:6936480 . . 0 21 hm5C_associated_SNPs_130585 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.978407979011536 0.000463287842184856 hm5C_site_50643 DeepMRMD:0.978407979011536;iRNA_m5C:0.000463287842184856 50644 chr15 97326897 97326897 1 + T C STAD 97326897 + 97326877 97326917 41 GCATGAGGAATGGCCCCGGCTGGGATGTCAGGGGCCCAGGA GCATGAGGAATGGCCCCGGCCGGGATGTCAGGGGCCCAGGA Direct Gain 0 0.961170115229082 0 0.959846377372742 prediction 0.922340230458164 Functional Gain - SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97326897 chr15:97326897 synonymous SNV . 0 21 hm5C_associated_SNPs_130586 0 0 0 0 1 exosome 0 0.500226127892103 0.919692754745484 0.000452255784205935 hm5C_site_50644 DeepMRMD:0.919692754745484;iRNA_m5C:0.000452255784205935 50645 chr16 31499038 31499038 1 + C G CESC 31499038 - 31499018 31499058 41 CCCGAGACGATTGTGAGTCCGAGGAGCAGCGCGGGCCACGG CCCGAGACGATTGTGAGTCCCAGGAGCAGCGCGGGCCACGG Direct Gain 0 0.96106757645699 0 0.905932426452637 prediction 0.92213515291398 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31499038 chr16:31499038 synonymous SNV . 0 21 hm5C_associated_SNPs_130587 0 0 0 0 0 exosome 0 0.500231643956432 0.811864852905274 0.000463287912863208 hm5C_site_50645 DeepMRMD:0.811864852905274;iRNA_m5C:0.000463287912863208 50646 chr7 154875961 154875961 1 + G C LUAD 154875961 + 154875941 154875981 41 ACACGTGGCGGGAGCAGAAGGAGCAGCGGGCCGCCCTCATG ACACGTGGCGGGAGCAGAAGCAGCAGCGGGCCGCCCTCATG Direct Gain 0 0.961065203694088 0 0.80155622959137 prediction 0.922130407388175 Functional Gain - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154875961 chr7:154875961 nonsynonymous SNV 0.838 1 21 hm5C_associated_SNPs_130588 0 0 0 0 1 exosome 0 0.500231643921301 0.60311245918274 0.000463287842601856 hm5C_site_50646 DeepMRMD:0.60311245918274;iRNA_m5C:0.000463287842601856 50647 chr14 73425441 73425441 1 + G C SKCM 73425441 + 73425421 73425461 41 GTGGCCTTCTCGTCGCGGCTGGGGGGCTCCCGGGGCGCGCC GTGGCCTTCTCGTCGCGGCTCGGGGGCTCCCGGGGCGCGCC Direct Gain 0 0.961065032212635 0 0.928002119064331 prediction 0.92213006442527 Functional Gain - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73425441 chr14:73425441 synonymous SNV . 0 21 hm5C_associated_SNPs_130589 0 0 0 0 0 chromatin 0 0.500231643912791 0.856004238128662 0.000463287825582581 hm5C_site_50647 DeepMRMD:0.856004238128662;iRNA_m5C:0.000463287825582581 50648 chr19 36207628 36207628 1 + T G SKCM 36207628 - 36207608 36207648 41 GGTGGAGGAAGAAGGACAACAGGGAGAGGTCGAGGGCCGAG GGTGGAGGAAGAAGGACAACCGGGAGAGGTCGAGGGCCGAG Direct Gain 0 0.961040275963134 0 0.900886595249176 prediction 0.922080551926267 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207628 chr19:36207628 nonsynonymous SNV 0.517 0 21 hm5C_associated_SNPs_130590 0 0 0 0 0 nucleus 0 0.500231644086719 0.801773190498352 0.000463288173438992 hm5C_site_50648 DeepMRMD:0.801773190498352;iRNA_m5C:0.000463288173438992 50649 chr4 57181322 57181322 1 + A G BLCA 57181322 - 57181302 57181342 41 CACGGGGCTCAGGTTGACTTTGGGAAAGAGAATCTGCTTCC CACGGGGCTCAGGTTGACTTCGGGAAAGAGAATCTGCTTCC Direct Gain 0 0.96100638701622 0 0.889336764812469 prediction 0.922012774032439 Functional Gain - KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57181322 chr4:57181322 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130591 0 0 0 0 0 cytosol 0 0.500231643920793 0.778673529624938 0.000463287841585336 hm5C_site_50649 DeepMRMD:0.778673529624938;iRNA_m5C:0.000463287841585336 50650 chr13 114145380 114145380 1 + G C rs112329358 114145380 + 114145360 114145400 41 GCGGGGGCGGTGCTGGGCAGGGCGGCGGCCGCTCCCTCCCG GCGGGGGCGGTGCTGGGCAGCGCGGCGGCCGCTCCCTCCCG Direct Gain 0 0.96099685989501 0 0.874165654182434 prediction 0.921993719790021 Functional Gain - TMCO3 ENSG00000150403 UTR5 Human protein_coding chr13:114145380 chr13:114145380 . . 0 21 hm5C_associated_SNPs_130592 0 0 1 0 0 Ribosome 0 0.500231644630763 0.748331308364868 0.000463289261525279 hm5C_site_50650 DeepMRMD:0.748331308364868;iRNA_m5C:0.000463289261525279 50651 chrX 146993631 146993631 1 + G C rs782202125 146993631 + 146993611 146993651 41 CGGCGGCGGCGGCGGCGGCTGGGCCTCGAGCGCCCGCAGCC CGGCGGCGGCGGCGGCGGCTCGGCCTCGAGCGCCCGCAGCC Direct Gain 0 0.960986351160186 0 0.750033259391785 prediction 0.921972702320373 Functional Gain - FMR1 ENSG00000102081 UTR5 Human protein_coding chrX:146993631 chrX:146993631 . . 0 21 hm5C_associated_SNPs_130593 0 0 1 0 0 Cytosol 0 0.500231643921092 0.50006651878357 0.000463287842184856 hm5C_site_50651 DeepMRMD:0.50006651878357;iRNA_m5C:0.000463287842184856 50652 chr2 42396746 42396746 1 + C G rs145171095 42396746 - 42396726 42396766 41 GGCGAAACCGTCCATCTTGCGGGGAAAGCGCCGGGCTCCGG GGCGAAACCGTCCATCTTGCCGGGAAAGCGCCGGGCTCCGG Direct Gain 0 0.960980765498476 0 0.890587568283081 prediction 0.921961530996953 Functional Gain - LOC102723824 ENSG00000224875 ncRNA_exonic Human antisense chr2:42396746 chr2:42396746 . . 0 21 hm5C_associated_SNPs_130594 0 0 0 0 0 unknown 0 0.500231617125351 0.781175136566162 0.000463234250702271 hm5C_site_50652 DeepMRMD:0.781175136566162;iRNA_m5C:0.000463234250702271 50653 chr11 75115170 75115170 1 + G C HNSC 75115170 + 75115150 75115190 41 GGGCTAAATCCATGAAGTTTGTGGATGGCCTGATGATCCAC GGGCTAAATCCATGAAGTTTCTGGATGGCCTGATGATCCAC Direct Gain 0 0.960978936622205 0 0.947854161262512 prediction 0.92195787324441 Functional Gain - RPS3 ENSG00000149273 CDS Human protein_coding chr11:75115170 chr11:75115170 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130595 0 0 1 0 0 Cytosol 0 0.500231697238798 0.895708322525024 0.000463394477595802 hm5C_site_50653 DeepMRMD:0.895708322525024;iRNA_m5C:0.000463394477595802 50654 chr17 61483582 61483582 1 + T G UCEC 61483582 - 61483562 61483602 41 CTTCGGAAGCAGCCATCATCAGGGGAGTGCGGCCCTGCTTG CTTCGGAAGCAGCCATCATCCGGGGAGTGCGGCCCTGCTTG Direct Gain 0 0.960960074182795 0 0.98677659034729 prediction 0.921920148365591 Functional Gain - TANC2 ENSG00000170921 CDS Human protein_coding chr17:61483582 chr17:61483582 nonsynonymous SNV 0.952 4 21 hm5C_associated_SNPs_130596 0 0 0 0 0 Cytosol 0 0.50023164392024 0.97355318069458 0.000463287840479332 hm5C_site_50654 DeepMRMD:0.97355318069458;iRNA_m5C:0.000463287840479332 50655 chr18 56823024 56823024 1 + T C SKCM 56823024 + 56823004 56823044 41 GCTGGAAAAGAAGGACGTGGTGGGAAGAGCAAGAGGGTGAG GCTGGAAAAGAAGGACGTGGCGGGAAGAGCAAGAGGGTGAG Direct Gain 0 0.960939686159439 0 0.803451240062714 prediction 0.921879372318879 Functional Gain - SEC11C ENSG00000166562 CDS Human protein_coding chr18:56823024 chr18:56823024 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_130597 0 0 1 0 0 Ribosome 0 0.500231643922852 0.606902480125428 0.000463287845703597 hm5C_site_50655 DeepMRMD:0.606902480125428;iRNA_m5C:0.000463287845703597 50656 chr17 7608918 7608918 1 + T C UCEC 7608918 + 7608898 7608938 41 CCCAGGCCTTGGCGGGGTCATGGGGCCCCCCCATTCTGGGC CCCAGGCCTTGGCGGGGTCACGGGGCCCCCCCATTCTGGGC Direct Gain 0 0.960936938220926 0 0.882120251655579 prediction 0.921873876441852 Functional Gain - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7608918 chr17:7608918 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130598 0 0 0 0 0 exosome 0 0.500231643921252 0.764240503311158 0.000463287842503712 hm5C_site_50656 DeepMRMD:0.764240503311158;iRNA_m5C:0.000463287842503712 50657 chr1 20964564 20964564 1 + A C STAD 20964564 + 20964544 20964584 41 TGCACCAGGAGAAGGGCAGGAGCGAGCTCCGGGGGCCCCTG TGCACCAGGAGAAGGGCAGGCGCGAGCTCCGGGGGCCCCTG Direct Gain 0 0.960927648885962 0 0.893933176994324 prediction 0.921855297771923 Functional Gain - PINK1 ENSG00000158828 CDS Human protein_coding chr1:20964564 chr1:20964564 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130599 0 0 0 0 1 Ribosome 0 0.500231643559229 0.787866353988648 0.000463287118457556 hm5C_site_50657 DeepMRMD:0.787866353988648;iRNA_m5C:0.000463287118457556 50658 chr3 158980417 158980417 1 + C G HNSC 158980417 - 158980397 158980437 41 CAGAGCTGCTCAGCTTCTCTGAGGAGACAGAGGGTGGGGAC CAGAGCTGCTCAGCTTCTCTCAGGAGACAGAGGGTGGGGAC Direct Gain 0 0.960922598149415 0 0.978650808334351 prediction 0.92184519629883 Functional Gain - IQCJ;IQCJ-SCHIP1 ENSG00000214216;ENSG00000250588 CDS Human other chr3:158980417 chr3:158980417 stopgain 0.833 0 21 hm5C_associated_SNPs_130600 0 0 0 0 0 unknown 0 0.500231643921093 0.957301616668702 0.000463287842185078 hm5C_site_50658 DeepMRMD:0.957301616668702;iRNA_m5C:0.000463287842185078 50659 chr14 21545011 21545011 1 + A C UCEC 21545011 + 21544991 21545031 41 AGTGGGAGTTAGGAGGTCACAGGGACCCCTCTCCCAGTCAC AGTGGGAGTTAGGAGGTCACCGGGACCCCTCTCCCAGTCAC Direct Gain 0 0.960901371274866 0 0.847092986106873 prediction 0.921802742549732 Functional Gain - ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21545011 chr14:21545011 synonymous SNV . 0 21 hm5C_associated_SNPs_130601 0 0 1 0 1 Cytosol 0 0.500231643919918 0.694185972213746 0.000463287839835846 hm5C_site_50659 DeepMRMD:0.694185972213746;iRNA_m5C:0.000463287839835846 50660 chr4 100208036 100208036 1 + A G SKCM 100208036 - 100208016 100208056 41 AGCCGGCATCGTGGAGAGTGTTGGAGAAGGGGTGACTACAG AGCCGGCATCGTGGAGAGTGCTGGAGAAGGGGTGACTACAG Direct Gain 0 0.960898602086017 0 0.809379577636719 prediction 0.921797204172033 Functional Gain - ADH1A ENSG00000187758 CDS Human protein_coding chr4:100208036 chr4:100208036 nonsynonymous SNV 0.656 1 21 hm5C_associated_SNPs_130602 0 0 0 0 1 exosome 0 0.500231643921096 0.618759155273438 0.000463287842192184 hm5C_site_50660 DeepMRMD:0.618759155273438;iRNA_m5C:0.000463287842192184 50661 chr1 245851477 245851477 1 + A G rs372541084 245851477 - 245851457 245851497 41 GTCTGCTCACGGCGGAGATCTTGGACTGGCCGGCCTTGGGC GTCTGCTCACGGCGGAGATCCTGGACTGGCCGGCCTTGGGC Direct Gain 0 0.96089035583565 0 0.934433996677399 prediction 0.921780711671299 Functional Gain - KIF26B ENSG00000162849 CDS Human protein_coding chr1:245851477 chr1:245851477 nonsynonymous SNV 0.622 3 21 hm5C_associated_SNPs_130603 0 0 0 0 0 insoluble cytoplasm 0 0.500231643921222 0.868867993354798 0.000463287842444871 hm5C_site_50661 DeepMRMD:0.868867993354798;iRNA_m5C:0.000463287842444871 50662 chr9 126774549 126774549 1 + A G rs541906506 126774549 - 126774529 126774569 41 CCTCAGCTGCCTGGCGCTCCTGGCGCTAACGGGCCCGGTGC CCTCAGCTGCCTGGCGCTCCCGGCGCTAACGGGCCCGGTGC Direct Gain 0 0.960862863886031 0 0.954056143760681 prediction 0.921725727772061 Functional Gain - LHX2 ENSG00000106689 UTR5 Human protein_coding chr9:126774549 chr9:126774549 . . 0 21 hm5C_associated_SNPs_130604 0 0 0 0 0 Cytosol 0 0.500231643921119 0.908112287521362 0.000463287842238591 hm5C_site_50662 DeepMRMD:0.908112287521362;iRNA_m5C:0.000463287842238591 50663 chr12 132446134 132446134 1 + A G rs541534183 132446134 - 132446114 132446154 41 GCCTGGGGGCACGGCAGTCCTGGAAGGGCTGGTGGGCGGGG GCCTGGGGGCACGGCAGTCCCGGAAGGGCTGGTGGGCGGGG Direct Gain 0 0.960855515290149 0 0.678630948066711 prediction 0.921711030580298 Functional Gain - EP400 ENSG00000183495 CDS Human protein_coding chr12:132446134 chr12:132446134 nonsynonymous SNV 0.968 5 21 hm5C_associated_SNPs_130605 0 0 0 0 0 Cytosol 0 0.500231643921092 0.357261896133422 0.000463287842184856 hm5C_site_50663 DeepMRMD:0.357261896133422;iRNA_m5C:0.000463287842184856 50664 chr19 3150269 3150269 1 + C G rs145131651 3150269 - 3150249 3150289 41 ACTCACTACACGGCTGAATCGAGCAGGTGGAATTCCCGCCG ACTCACTACACGGCTGAATCCAGCAGGTGGAATTCCCGCCG Direct Gain 0 0.960832710776789 0 0.743091881275177 prediction 0.921665421553578 Functional Gain - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3150269 chr19:3150269 synonymous SNV . 0 21 hm5C_associated_SNPs_130606 0 0 0 0 0 exosome 0 0.50023164392233 0.486183762550354 0.000463287844659988 hm5C_site_50664 DeepMRMD:0.486183762550354;iRNA_m5C:0.000463287844659988 50665 chr11 33564672 33564672 1 + A G GBM 33564672 - 33564652 33564692 41 GCTGGAAGAGTGGGCATTTCTGGCACAGGAGATGGGGAGGC GCTGGAAGAGTGGGCATTTCCGGCACAGGAGATGGGGAGGC Direct Gain 0 0.960815956760485 0 0.918701171875 prediction 0.92163191352097 Functional Gain - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33564672 chr11:33564672 synonymous SNV . 0 21 hm5C_associated_SNPs_130607 0 0 0 0 0 exosome 0 0.500231643876135 0.83740234375 0.000463287752269226 hm5C_site_50665 DeepMRMD:0.83740234375;iRNA_m5C:0.000463287752269226 50666 chr4 111397773 111397773 1 + C G CESC 111397773 - 111397753 111397793 41 GGTCCTGGGCAGGAGGACCTGAGGGGCTGGCCGTGGAAGAA GGTCCTGGGCAGGAGGACCTCAGGGGCTGGCCGTGGAAGAA Direct Gain 0 0.960797141746752 0 0.916681945323944 prediction 0.921594283493503 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111397773 chr4:111397773 stopgain 0.003 0 21 hm5C_associated_SNPs_130608 0 0 0 0 0 exosome 0 0.500231643920995 0.833363890647888 0.000463287841990789 hm5C_site_50666 DeepMRMD:0.833363890647888;iRNA_m5C:0.000463287841990789 50667 chr18 48256017 48256017 1 + T G rs535834033 48256017 - 48255997 48256037 41 GGGCGGCCGGGGGGCGAGGCAGACAAGCGGCGCTCGGGGTC GGGCGGCCGGGGGGCGAGGCCGACAAGCGGCGCTCGGGGTC Direct Gain 0 0.960762654230908 0 0.791877388954163 prediction 0.921525308461817 Functional Gain - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48256017 chr18:48256017 synonymous SNV . 0 21 hm5C_associated_SNPs_130609 0 0 0 0 0 exosome 0 0.500231643921142 0.583754777908326 0.000463287842283888 hm5C_site_50667 DeepMRMD:0.583754777908326;iRNA_m5C:0.000463287842283888 50668 chr7 102112954 102112954 1 + T C rs539175596 102112954 + 102112934 102112974 41 TGTGGAGCTGGAGGCAGACGTGGGGGGGCCGGGGCAGCCAG TGTGGAGCTGGAGGCAGACGCGGGGGGGCCGGGGCAGCCAG Direct Gain 0 0.960762526423199 0 0.979784965515137 prediction 0.921525052846397 Functional Gain - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102112954 chr7:102112954 nonsynonymous SNV 0.102 2 21 hm5C_associated_SNPs_130610 0 0 1 0 1 Ribosome 0 0.500231643915657 0.959569931030274 0.000463287831314441 hm5C_site_50668 DeepMRMD:0.959569931030274;iRNA_m5C:0.000463287831314441 50669 chr16 1719106 1719106 1 + A G COAD 1719106 - 1719086 1719126 41 GTACCACTGGGGGTCGTGGGTGGGAGAGGCGATCCAGTGTG GTACCACTGGGGGTCGTGGGCGGGAGAGGCGATCCAGTGTG Direct Gain 0 0.960758398009846 0 0.92028534412384 prediction 0.921516796019693 Functional Gain - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1719106 chr16:1719106 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_130611 0 0 0 0 0 chromatin 0 0.500231651244531 0.84057068824768 0.000463302489062345 hm5C_site_50669 DeepMRMD:0.84057068824768;iRNA_m5C:0.000463302489062345 50670 chr15 64388288 64388288 1 + G C CESC 64388288 + 64388268 64388308 41 CCGGCCTGGAGCCGGAGTCCGAGGGGGCGGCCGGGGGATCA CCGGCCTGGAGCCGGAGTCCCAGGGGGCGGCCGGGGGATCA Direct Gain 0 0.960697505427199 0 0.867080271244049 prediction 0.921395010854398 Functional Gain - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64388288 chr15:64388288 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_130612 0 0 1 0 1 Ribosome 0 0.500231639903917 0.734160542488098 0.000463279807834338 hm5C_site_50670 DeepMRMD:0.734160542488098;iRNA_m5C:0.000463279807834338 50671 chr14 24601642 24601642 1 + C G LUSC 24601642 - 24601622 24601662 41 CTGCGGCGGTCAGGCAGCTCGTGGAGCAGCAGACCCTGGGG CTGCGGCGGTCAGGCAGCTCCTGGAGCAGCAGACCCTGGGG Direct Gain 0 0.96069643699912 0 0.916637539863586 prediction 0.92139287399824 Functional Gain - FITM1 ENSG00000139914 CDS Human protein_coding chr14:24601642 chr14:24601642 nonsynonymous SNV 0.975 0 21 hm5C_associated_SNPs_130613 0 0 0 0 0 insoluble cytoplasm 0 0.500231643921231 0.833275079727172 0.000463287842461968 hm5C_site_50671 DeepMRMD:0.833275079727172;iRNA_m5C:0.000463287842461968 50672 chr10 100004536 100004536 1 + G C rs112832441 100004536 + 100004516 100004556 41 TCCAGCTGCACTGCAGCCAGGGGGGATACCAGCTTCATTCC TCCAGCTGCACTGCAGCCAGCGGGGATACCAGCTTCATTCC Direct Gain 0 0.960693833547297 0 0.916919469833374 prediction 0.921387667094594 Functional Gain - R3HCC1L ENSG00000166024 UTR3 Human protein_coding chr10:100004536 chr10:100004536 . . 0 21 hm5C_associated_SNPs_130614 0 0 1 1 0 Nucleus 0 0.500231643921092 0.833838939666748 0.000463287842184856 hm5C_site_50672 DeepMRMD:0.833838939666748;iRNA_m5C:0.000463287842184856 50673 chr19 41066216 41066216 1 + C G KIRC 41066216 - 41066196 41066236 41 GGAAGCGCAGGGCGTCGGCTGTGGAGCTGACATGCAGGCGG GGAAGCGCAGGGCGTCGGCTCTGGAGCTGACATGCAGGCGG Direct Gain 0 0.960655450446445 0 0.82075423002243 prediction 0.921310900892889 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41066216 chr19:41066216 nonsynonymous SNV 0.973 3 21 hm5C_associated_SNPs_130615 0 0 0 0 0 cytosol 0 0.500231643921194 0.64150846004486 0.000463287842388027 hm5C_site_50673 DeepMRMD:0.64150846004486;iRNA_m5C:0.000463287842388027 50674 chr14 36003698 36003698 1 + T C rs112804872 36003698 + 36003678 36003718 41 GGGTCGCCATGTCGGGCGGCTGGGGTGAGCCCGGGGACGGG GGGTCGCCATGTCGGGCGGCCGGGGTGAGCCCGGGGACGGG Direct Gain 0 0.960641689303259 0 0.887916684150696 prediction 0.921283378606518 Functional Gain - INSM2 ENSG00000168348 CDS Human protein_coding chr14:36003698 chr14:36003698 synonymous SNV . 0 21 hm5C_associated_SNPs_130616 0 0 0 0 0 unknown 0 0.50023164388168 0.775833368301392 0.000463287763360354 hm5C_site_50674 DeepMRMD:0.775833368301392;iRNA_m5C:0.000463287763360354 50675 chr17 44076968 44076968 1 + A G ESCA 44076968 - 44076948 44076988 41 GAGGCAGGGCAGCTGCAGGGTGGGAGGGACAGTTCTGGCCC GAGGCAGGGCAGCTGCAGGGCGGGAGGGACAGTTCTGGCCC Direct Gain 0 0.960637137739028 0 0.847186982631683 prediction 0.921274275478057 Functional Gain - STH ENSG00000256762 CDS Human protein_coding chr17:44076968 chr17:44076968 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130617 0 0 0 0 0 exosome 0 0.500231643921092 0.694373965263366 0.000463287842184856 hm5C_site_50675 DeepMRMD:0.694373965263366;iRNA_m5C:0.000463287842184856 50676 chr3 12421299 12421299 1 + T G SKCM 12421299 - 12421279 12421319 41 TAGTGAAGGGCTTGATATCAAAGGAGTGGGAGTGGTCTTCC TAGTGAAGGGCTTGATATCACAGGAGTGGGAGTGGTCTTCC Direct Gain 0 0.96062872554576 0 0.803509593009949 prediction 0.92125745109152 Functional Gain - PPARG ENSG00000132170 CDS Human protein_coding chr3:12421299 chr3:12421299 nonsynonymous SNV 0.927 4 21 hm5C_associated_SNPs_130618 0 0 0 0 0 Cytosol 0 0.500219206667253 0.607019186019898 0.000438413334505228 hm5C_site_50676 DeepMRMD:0.607019186019898;iRNA_m5C:0.000438413334505228 50677 chr14 21467619 21467619 1 + T C LAML 21467619 + 21467599 21467639 41 CCCAGAGATGGAGCAACTACTAGGAATAAAACTTGGCTGCC CCCAGAGATGGAGCAACTACCAGGAATAAAACTTGGCTGCC Direct Gain 0 0.960609407582604 0 0.951165914535522 prediction 0.921218815165208 Functional Gain - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21467619 chr14:21467619 nonsynonymous SNV 0.972 0 21 hm5C_associated_SNPs_130619 0 0 0 0 0 exosome 0 0.500231603994042 0.902331829071044 0.000463207988083747 hm5C_site_50677 DeepMRMD:0.902331829071044;iRNA_m5C:0.000463207988083747 50678 chr2 54856704 54856704 1 + C G LUSC 54856704 - 54856684 54856724 41 GGAGACTCGGCATGCTCCTGGGGGAGGGCGCTGGCTTGTTC GGAGACTCGGCATGCTCCTGCGGGAGGGCGCTGGCTTGTTC Direct Gain 0 0.960606997093038 0 0.820712327957153 prediction 0.921213994186076 Functional Gain - SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54856704 chr2:54856704 synonymous SNV . 0 21 hm5C_associated_SNPs_130620 0 0 0 0 0 Nucleus 0 0.500231643921091 0.641424655914306 0.000463287842181526 hm5C_site_50678 DeepMRMD:0.641424655914306;iRNA_m5C:0.000463287842181526 50679 chr7 106508982 106508982 1 + G C OV 106508982 + 106508962 106509002 41 GGAAGGAAGAGTGGCCACTGGTGGATGACTGCACGGGAGTC GGAAGGAAGAGTGGCCACTGCTGGATGACTGCACGGGAGTC Direct Gain 0 0.960565530436792 0 0.868323564529419 prediction 0.921131060873583 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508982 chr7:106508982 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_130621 0 0 1 0 0 Cytosol 0 0.50023629443741 0.736647129058838 0.000472588874819824 hm5C_site_50679 DeepMRMD:0.736647129058838;iRNA_m5C:0.000472588874819824 50680 chr22 32754222 32754222 1 + G C UCEC 32754222 + 32754202 32754242 41 AAAACCAATGTCCCTGGAGTGTGGATGCACCGTCTGCCTCA AAAACCAATGTCCCTGGAGTCTGGATGCACCGTCTGCCTCA Direct Gain 0 0.960560683763984 0 0.900627970695496 prediction 0.921121367527968 Functional Gain - RFPL3 ENSG00000128276 CDS Human protein_coding chr22:32754222 chr22:32754222 nonsynonymous SNV 0.187 3 21 hm5C_associated_SNPs_130622 0 0 0 0 1 exosome 0 0.50022542440329 0.801255941390992 0.000450848806580639 hm5C_site_50680 DeepMRMD:0.801255941390992;iRNA_m5C:0.000450848806580639 50681 chr19 36212061 36212061 1 + A G UCEC 36212061 - 36212041 36212081 41 CAGCGAAATGTGGGTTCCCTTAGGATGGACCGTCTCTTCTC CAGCGAAATGTGGGTTCCCTCAGGATGGACCGTCTCTTCTC Direct Gain 0 0.960531202047196 0 0.968761086463928 prediction 0.921062404094391 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36212061 chr19:36212061 synonymous SNV . 0 21 hm5C_associated_SNPs_130623 0 0 0 0 0 chromatin 0 0.500231597889218 0.937522172927856 0.000463195778436232 hm5C_site_50681 DeepMRMD:0.937522172927856;iRNA_m5C:0.000463195778436232 50682 chr1 55525313 55525313 1 + A G rs28362270 55525313 - 55525293 55525333 41 TGAGGACGTGGCCCTGTTGGTGGCAGTGGACACGGGTCCCC TGAGGACGTGGCCCTGTTGGCGGCAGTGGACACGGGTCCCC Direct Gain 0 0.960524020894135 0 0.822265982627869 prediction 0.921048041788271 Functional Gain - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55525313 chr1:55525313 nonsynonymous SNV 0.083 0 21 hm5C_associated_SNPs_130624 2 0 0 0 0 Nucleus 0 0.500231643921092 0.644531965255738 0.000463287842184856 hm5C_site_50682 DeepMRMD:0.644531965255738;iRNA_m5C:0.000463287842184856 Hypercholesterolemia, autosomal dominant, 3 Hypercholesterolemia, autosomal dominant, 3 50683 chr15 59417063 59417063 1 + T C rs28383563 59417063 + 59417043 59417083 41 AGACCTTGCCTCCCCACTGATAGGAAGGTCCTAGGCTGCCG AGACCTTGCCTCCCCACTGACAGGAAGGTCCTAGGCTGCCG Direct Gain 0 0.960521431942573 0 0.912050783634186 prediction 0.921042863885145 Functional Gain - CCNB2 ENSG00000157456 CDS Human protein_coding chr15:59417063 chr15:59417063 nonsynonymous SNV 0.023 0 21 hm5C_associated_SNPs_130625 0 0 1 0 1 Ribosome 0 0.500231643928593 0.824101567268372 0.00046328785718619 hm5C_site_50683 DeepMRMD:0.824101567268372;iRNA_m5C:0.00046328785718619 50684 chr17 27188456 27188456 1 + A G LAML 27188456 - 27188436 27188476 41 CTACTGACTGCCAGGGCACTTGGGAATGGCAAGGAAACCGT CTACTGACTGCCAGGGCACTCGGGAATGGCAAGGAAACCGT Direct Gain 0 0.960518245224998 0 0.902483820915222 prediction 0.921036490449996 Functional Gain - MIR451A;MIR451B ENSG00000264066 ncRNA_exonic Human lincRNA chr17:27188456 chr17:27188456 . . 0 21 hm5C_associated_SNPs_130626 0 0 1 0 0 unknown 0 0.500231643921092 0.804967641830444 0.000463287842184856 hm5C_site_50684 DeepMRMD:0.804967641830444;iRNA_m5C:0.000463287842184856 50685 chr1 32681437 32681437 1 + T G BRCA 32681437 - 32681417 32681457 41 CAGCCCCAGGCTGGTTTTCCAGGGACAAGGCCTCTTCCACT CAGCCCCAGGCTGGTTTTCCCGGGACAAGGCCTCTTCCACT Direct Gain 0 0.960442701266665 0 0.958002865314484 prediction 0.92088540253333 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32681437 chr1:32681437 nonsynonymous SNV 0.046 0 21 hm5C_associated_SNPs_130627 0 0 1 0 0 cytosol 0 0.500231643921093 0.916005730628968 0.000463287842185078 hm5C_site_50685 DeepMRMD:0.916005730628968;iRNA_m5C:0.000463287842185078 50686 chrX 155254980 155254980 1 + C G LUSC 155254980 - 155254960 155255000 41 CTGTTGCGGTGGGGGCACAGGAGGGATGGAGTCTGACACGC CTGTTGCGGTGGGGGCACAGCAGGGATGGAGTCTGACACGC Direct Gain 0 0.960439967001961 0 0.832999587059021 prediction 0.920879934003921 Functional Gain - DDX11L16 ENSG00000182484;ENSG00000270726 ncRNA_exonic Human other chrX:155254980 chrX:155254980 . . 0 21 hm5C_associated_SNPs_130628 0 0 0 0 0 unknown 0 0.500231643921125 0.665999174118042 0.000463287842250804 hm5C_site_50686 DeepMRMD:0.665999174118042;iRNA_m5C:0.000463287842250804 50687 chr11 4112585 4112585 1 + C G BLCA 4112585 - 4112565 4112605 41 GTCTGCAGCACGGCTCATCTGAGGAGGTTTGGGGGCCACAC GTCTGCAGCACGGCTCATCTCAGGAGGTTTGGGGGCCACAC Direct Gain 0 0.960419078862987 0 0.933085680007935 prediction 0.920838157725975 Functional Gain - STIM1 ENSG00000167323 CDS Human protein_coding chr11:4112585 chr11:4112585 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130629 0 0 0 0 0 Endoplasmic reticulum 0 0.500231831844626 0.86617136001587 0.000463663689252103 hm5C_site_50687 DeepMRMD:0.86617136001587;iRNA_m5C:0.000463663689252103 50688 chr7 128370068 128370068 1 + C G rs113716202 128370068 - 128370048 128370088 41 GCCAGAGTGCTGAGTAGTGAGAGGGGCTGCAGGCCGGAGGG GCCAGAGTGCTGAGTAGTGACAGGGGCTGCAGGCCGGAGGG Direct Gain 0 0.960368435944864 0 0.916501581668854 prediction 0.920736871889728 Functional Gain - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128370068 chr7:128370068 synonymous SNV . 0 21 hm5C_associated_SNPs_130630 0 0 0 0 0 exosome 0 0.500231643921084 0.833003163337708 0.000463287842167093 hm5C_site_50688 DeepMRMD:0.833003163337708;iRNA_m5C:0.000463287842167093 50689 chr7 75896889 75896889 1 + C G rs559611275 75896889 - 75896869 75896909 41 AGGACGCCCAGCGGGGAGCCGAGGAGGGAGGAAGCGGCCGC AGGACGCCCAGCGGGGAGCCCAGGAGGGAGGAAGCGGCCGC Direct Gain 0 0.960357250914338 0 0.835655152797699 prediction 0.920714501828677 Functional Gain - SRRM3 ENSG00000177679 intronic Human protein_coding chr7:75896889 chr7:75896889 . . 0 21 hm5C_associated_SNPs_130631 0 0 0 0 0 exosome 0 0.500231643921092 0.671310305595398 0.000463287842184856 hm5C_site_50689 DeepMRMD:0.671310305595398;iRNA_m5C:0.000463287842184856 50690 chr1 248569879 248569879 1 + T C rs138350213 248569879 + 248569859 248569899 41 CCGGGTCTGTTGGATGATTATAGCAGGTTCCTGGTTTGGGG CCGGGTCTGTTGGATGATTACAGCAGGTTCCTGGTTTGGGG Direct Gain 0 0.960348928510734 0 0.366254329681396 prediction 0.920697857021469 Functional Gain - OR2T1 ENSG00000175143 CDS Human protein_coding chr1:248569879 chr1:248569879 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_130632 0 0 0 0 0 unknown 0 0.500231643921092 0 0.000463287842184856 hm5C_site_50690 DeepMRMD:0;iRNA_m5C:0.000463287842184856 50691 chr2 128459195 128459195 1 + G C rs141206501 128459195 + 128459175 128459215 41 CCGCTGCTCGCCGCGGAGAAGGCGGAGGAGCCCGGGGACCG CCGCTGCTCGCCGCGGAGAACGCGGAGGAGCCCGGGGACCG Direct Gain 0 0.960343557362929 0 0.859295010566711 prediction 0.920687114725859 Functional Gain - SFT2D3 ENSG00000173349 CDS Human protein_coding chr2:128459195 chr2:128459195 nonsynonymous SNV 0.010 0 21 hm5C_associated_SNPs_130633 0 0 1 0 0 Ribosome 0 0.500231643921092 0.718590021133422 0.000463287842184856 hm5C_site_50691 DeepMRMD:0.718590021133422;iRNA_m5C:0.000463287842184856 50692 chr12 52700004 52700004 1 + A G KIRP 52700004 - 52699984 52700024 41 TCTCGATGTCCAGGCCCAGCTTGGAGTTCATCACCTCCTGG TCTCGATGTCCAGGCCCAGCCTGGAGTTCATCACCTCCTGG Direct Gain 0 0.960335918340166 0 0.478975087404251 prediction 0.920671836680331 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52700004 chr12:52700004 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130634 0 0 0 0 0 nucleus 0 0.500231639953075 0 0.000463279906150138 hm5C_site_50692 DeepMRMD:0;iRNA_m5C:0.000463279906150138 50693 chr12 123238315 123238315 1 + T C SKCM 123238315 + 123238295 123238335 41 ACCCAAGGAACAGTGCCAAGTTAGATGCCGATTACCCACTT ACCCAAGGAACAGTGCCAAGCTAGATGCCGATTACCCACTT Direct Gain 0 0.960332348260762 0 0.775860488414764 prediction 0.920664696521524 Functional Gain - DENR ENSG00000139726 CDS Human protein_coding chr12:123238315 chr12:123238315 synonymous SNV . 0 21 hm5C_associated_SNPs_130635 0 0 1 0 1 Ribosome 0 0.500231643921091 0.551720976829528 0.000463287842181082 hm5C_site_50693 DeepMRMD:0.551720976829528;iRNA_m5C:0.000463287842181082 50694 chr13 114145399 114145399 1 + C G rs537596671 114145399 - 114145379 114145419 41 GGCCGGGAGGCCGGGAGTCCGGGAGGGAGCGGCCGCCGCCC GGCCGGGAGGCCGGGAGTCCCGGAGGGAGCGGCCGCCGCCC Direct Gain 0 0.960309555605638 0 0.868955135345459 prediction 0.920619111211276 Functional Gain - TMCO3 ENSG00000150403 UTR5 Human protein_coding chr13:114145399 chr13:114145399 . . 0 21 hm5C_associated_SNPs_130636 0 0 0 0 0 Ribosome 0 0.500231643921172 0.737910270690918 0.000463287842343396 hm5C_site_50694 DeepMRMD:0.737910270690918;iRNA_m5C:0.000463287842343396 50695 chr14 72152239 72152239 1 + A G UCEC 72152239 - 72152219 72152259 41 AGCATTCAGCCGCGAGGTCATGGGACTCTGCACCTGGGACG AGCATTCAGCCGCGAGGTCACGGGACTCTGCACCTGGGACG Direct Gain 0 0.960283728773584 0 0.873785018920898 prediction 0.920567457547168 Functional Gain - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152239 chr14:72152239 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_130637 0 0 0 0 0 Nucleus 0 0.500231643502741 0.747570037841796 0.000463287005481927 hm5C_site_50695 DeepMRMD:0.747570037841796;iRNA_m5C:0.000463287005481927 50696 chr3 177616343 177616343 1 + A G rs9829232 177616343 - 177616323 177616363 41 AGTGGAAAGAGGCCAGGGAATGGGAGCAGGCACTTCCAAGC AGTGGAAAGAGGCCAGGGAACGGGAGCAGGCACTTCCAAGC Direct Gain 0 0.960240103028887 0 0.928644835948944 prediction 0.920480206057773 Functional Gain - LINC02015 ENSG00000231574 ncRNA_exonic Human lincRNA chr3:177616343 chr3:177616343 . . 0 21 hm5C_associated_SNPs_130638 0 0 0 0 0 unknown 0 0.500231643921092 0.857289671897888 0.000463287842184856 hm5C_site_50696 DeepMRMD:0.857289671897888;iRNA_m5C:0.000463287842184856 50697 chr6 26522366 26522366 1 + G C rs555046751 26522366 + 26522346 26522386 41 CGTTAGGGCATGGAGGGCCCGGGAAGGCGGCCTAGGGACGC CGTTAGGGCATGGAGGGCCCCGGAAGGCGGCCTAGGGACGC Direct Gain 0 0.960222604104351 0 0.69559770822525 prediction 0.920445208208703 Functional Gain - HCG11 ENSG00000228223 ncRNA_exonic Human lincRNA chr6:26522366 chr6:26522366 . . 0 21 hm5C_associated_SNPs_130639 0 0 1 0 0 unknown 0 0.500231643898823 0.3911954164505 0.000463287797645151 hm5C_site_50697 DeepMRMD:0.3911954164505;iRNA_m5C:0.000463287797645151 50698 chr1 186276244 186276244 1 + A G HNSC 186276244 - 186276224 186276264 41 GGTGGTGGGTGCAGGCTCCTTGGGAGTGGTGGGTGTAGGCT GGTGGTGGGTGCAGGCTCCTCGGGAGTGGTGGGTGTAGGCT Direct Gain 0 0.960167058040281 0 0.966841280460358 prediction 0.920334116080561 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276244 chr1:186276244 nonsynonymous SNV 0.015 0 21 hm5C_associated_SNPs_130640 0 0 0 0 0 nucleoplasm 0 0.500231643921092 0.933682560920716 0.000463287842184856 hm5C_site_50698 DeepMRMD:0.933682560920716;iRNA_m5C:0.000463287842184856 50699 chr9 2718128 2718128 1 + C G rs541196988 2718128 - 2718108 2718148 41 TTAGCTGGCGGCTGCGGCTGGTGGAGGTGGCCAGGCGACCT TTAGCTGGCGGCTGCGGCTGCTGGAGGTGGCCAGGCGACCT Direct Gain 0 0.96015235246192 0 0.799054145812988 prediction 0.92030470492384 Functional Gain - KCNV2 ENSG00000168263 CDS Human protein_coding chr9:2718128 chr9:2718128 nonsynonymous SNV 0.850 0 21 hm5C_associated_SNPs_130641 0 0 0 0 0 insoluble cytoplasm 0 0.500231643874472 0.598108291625976 0.000463287748944552 hm5C_site_50699 DeepMRMD:0.598108291625976;iRNA_m5C:0.000463287748944552 50700 chr6 56911508 56911508 1 + T C rs529181557 56911508 + 56911488 56911528 41 AGTGGTGGCGGCTGCGGCAGTAGGGACAGCAGGAGCAGTGG AGTGGTGGCGGCTGCGGCAGCAGGGACAGCAGGAGCAGTGG Direct Gain 0 0.960148886306064 0 0.866107106208801 prediction 0.920297772612128 Functional Gain - KIAA1586 ENSG00000168116 UTR5 Human protein_coding chr6:56911508 chr6:56911508 . . 0 21 hm5C_associated_SNPs_130642 0 0 1 0 1 exosome 0 0.500231643921092 0.732214212417602 0.000463287842184856 hm5C_site_50700 DeepMRMD:0.732214212417602;iRNA_m5C:0.000463287842184856 50701 chr5 122152657 122152657 1 + G C BLCA 122152657 + 122152637 122152677 41 CTGAGTGGAGCAGGAATATTGAGGATGGTGAACAAGGCTGC CTGAGTGGAGCAGGAATATTCAGGATGGTGAACAAGGCTGC Direct Gain 0 0.960133779717921 0 0.916055560112 prediction 0.920267559435841 Functional Gain - SNX2 ENSG00000205302 CDS Human protein_coding chr5:122152657 chr5:122152657 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130643 0 0 1 0 2 Ribosome 0 0.50023164392333 0.832111120224 0.000463287846659499 hm5C_site_50701 DeepMRMD:0.832111120224;iRNA_m5C:0.000463287846659499 50702 chr19 10395683 10395683 1 + A G rs5498 10395683 - 10395663 10395703 41 GAGCACATTCACGGTCACCTTGCGGGTGACCTCCCCTTGAG GAGCACATTCACGGTCACCTCGCGGGTGACCTCCCCTTGAG Direct Gain 0 0.960133091140656 0 0.920810103416443 prediction 0.920266182281312 Functional Gain - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10395683 chr19:10395683 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130644 0 1 0 0 0 Nucleus 0 0.500231649479091 0.841620206832886 0.000463298958182534 hm5C_site_50702 DeepMRMD:0.841620206832886;iRNA_m5C:0.000463298958182534 50703 chr20 37573487 37573487 1 + A C rs62204119 37573487 + 37573467 37573507 41 AGCTACTTGGGAGGCTGAGGAAGGAGAATCGCTTGAACCCG AGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCG Direct Gain 0 0.960115000866797 0 0.967277050018311 prediction 0.920230001733595 Functional Gain - FAM83D ENSG00000101447 intronic Human protein_coding chr20:37573487 chr20:37573487 . . 0 21 hm5C_associated_SNPs_130645 0 0 0 0 0 Ribosome 0 0.500231643920958 0.934554100036622 0.000463287841916404 hm5C_site_50703 DeepMRMD:0.934554100036622;iRNA_m5C:0.000463287841916404 50704 chr14 58862703 58862703 1 + C G rs530315795 58862703 - 58862683 58862723 41 GGCCGCCGCGGCGGCCAAGAGGCGGAGGAGGGAGCGGACGG GGCCGCCGCGGCGGCCAAGACGCGGAGGAGGGAGCGGACGG Direct Gain 0 0.960098583737792 0 0.918859362602234 prediction 0.920197167475584 Functional Gain - TOMM20L ENSG00000196860 CDS Human protein_coding chr14:58862703 chr14:58862703 nonsynonymous SNV 0.150 0 21 hm5C_associated_SNPs_130646 0 0 0 0 0 exosome 0 0.500231643921089 0.837718725204468 0.000463287842178417 hm5C_site_50704 DeepMRMD:0.837718725204468;iRNA_m5C:0.000463287842178417 50705 chr19 49464213 49464213 1 + C G LUAD 49464213 - 49464193 49464233 41 GGTGGGGCAGGGGCGGTGGTGAGGGCGCGGTGGTGGGGGTG GGTGGGGCAGGGGCGGTGGTCAGGGCGCGGTGGTGGGGGTG Direct Gain 0 0.960096872630715 0 0.936997771263123 prediction 0.920193745261429 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49464213 chr19:49464213 synonymous SNV . 0 21 hm5C_associated_SNPs_130647 0 0 0 0 0 Cytosol 0 0.5002316439206 0.873995542526246 0.000463287841199644 hm5C_site_50705 DeepMRMD:0.873995542526246;iRNA_m5C:0.000463287841199644 50706 chr15 56689383 56689383 1 + T C rs150466462 56689383 + 56689363 56689403 41 GATGGAGATGAGGAACTTGTTAGGAACTAGAGCAAATGTGA GATGGAGATGAGGAACTTGTCAGGAACTAGAGCAAATGTGA Direct Gain 0 0.960075253477982 0 0.831416964530945 prediction 0.920150506955964 Functional Gain - TEX9 ENSG00000151575 UTR3 Human protein_coding chr15:56689383 chr15:56689383 . . 0 21 hm5C_associated_SNPs_130648 0 0 1 2 0 Nucleus 0 0.500231634147269 0.66283392906189 0.000463268294538244 hm5C_site_50706 DeepMRMD:0.66283392906189;iRNA_m5C:0.000463268294538244 50707 chr1 15541847 15541847 1 + G C CESC 15541847 + 15541827 15541867 41 TGCCTGAGTATCAGGGATAAGAGGAAGCAGCGGCAGGGCGA TGCCTGAGTATCAGGGATAACAGGAAGCAGCGGCAGGGCGA Direct Gain 0 0.960064417866369 0 0.791775107383728 prediction 0.920128835732737 Functional Gain - TMEM51 ENSG00000171729 CDS Human protein_coding chr1:15541847 chr1:15541847 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130649 0 0 0 0 1 cytosol 0 0.500231643924116 0.583550214767456 0.000463287848232019 hm5C_site_50707 DeepMRMD:0.583550214767456;iRNA_m5C:0.000463287848232019 50708 chr15 75941771 75941771 1 + G C BLCA 75941771 + 75941751 75941791 41 TCTCAAACCAGGGTAGCTTTGAGGAGGATGATGATGATGAC TCTCAAACCAGGGTAGCTTTCAGGAGGATGATGATGATGAC Direct Gain 0 0.960056677461483 0 0.950529813766479 prediction 0.920113354922966 Functional Gain - SNX33 ENSG00000173548 CDS Human protein_coding chr15:75941771 chr15:75941771 nonsynonymous SNV 0.898 0 21 hm5C_associated_SNPs_130650 0 0 0 0 0 membrane 0 0.500231617709175 0.901059627532958 0.000463235418349361 hm5C_site_50708 DeepMRMD:0.901059627532958;iRNA_m5C:0.000463235418349361 50709 chr6 28227293 28227293 1 + T C LUSC 28227293 + 28227273 28227313 41 CGCTCTCACTCCCGCGGCCGTGAGGGCCTCAGGCCTCCTTG CGCTCTCACTCCCGCGGCCGCGAGGGCCTCAGGCCTCCTTG Direct Gain 0 0.960043196285481 0 0.919277608394623 prediction 0.920086392570963 Functional Gain - NKAPL ENSG00000189134 CDS Human protein_coding chr6:28227293 chr6:28227293 synonymous SNV . 0 21 hm5C_associated_SNPs_130651 0 0 0 0 0 exosome 0 0.500231643921093 0.838555216789246 0.000463287842185078 hm5C_site_50709 DeepMRMD:0.838555216789246;iRNA_m5C:0.000463287842185078 50710 chr19 52729309 52729309 1 + T C rs369880957 52729309 + 52729289 52729329 41 GTCCCTCTTTGGGGAGACACTGGGGGGCCTTTGGCTGTCAC GTCCCTCTTTGGGGAGACACCGGGGGGCCTTTGGCTGTCAC Direct Gain 0 0.960041729956501 0 0.972474455833435 prediction 0.920083459913001 Functional Gain - PPP2R1A ENSG00000268015 ncRNA_intronic Human antisense chr19:52729309 chr19:52729309 . . 0 21 hm5C_associated_SNPs_130652 0 0 1 1 1 Ribosome 0 0.500231643921092 0.94494891166687 0.000463287842184856 hm5C_site_50710 DeepMRMD:0.94494891166687;iRNA_m5C:0.000463287842184856 50711 chr2 17721953 17721953 1 + T C rs575221680 17721953 + 17721933 17721973 41 CAGGGACCCTAGGTTTTCTATGGGATTCCCAATCTGCAGCA CAGGGACCCTAGGTTTTCTACGGGATTCCCAATCTGCAGCA Direct Gain 0 0.960006094080798 0 0.837222933769226 prediction 0.920012188161595 Functional Gain - VSNL1 ENSG00000163032 UTR5 Human protein_coding chr2:17721953 chr2:17721953 . . 0 21 hm5C_associated_SNPs_130653 0 0 0 0 0 cytosol 0 0.500231643921096 0.674445867538452 0.000463287842191074 hm5C_site_50711 DeepMRMD:0.674445867538452;iRNA_m5C:0.000463287842191074 50712 chr17 66364804 66364804 1 + T C rs1558878 66364804 + 66364784 66364824 41 GCCTGTATGGTGCAGGGCTCTGGGAGATGGACAGTCTGGTG GCCTGTATGGTGCAGGGCTCCGGGAGATGGACAGTCTGGTG Direct Gain 0 0.959989207733752 0 0.866368651390076 prediction 0.919978415467504 Functional Gain - ARSG ENSG00000141337 CDS Human protein_coding chr17:66364804 chr17:66364804 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_130654 0 1 0 0 1 chromatin 0 0.500188842122363 0.732737302780152 0.000377684244726284 hm5C_site_50712 DeepMRMD:0.732737302780152;iRNA_m5C:0.000377684244726284 50713 chr22 31032741 31032741 1 + A G LGG 31032741 - 31032721 31032761 41 GCAGCGAGTGCCGCCTGGCATGGGGCGCCGTGCCCCCCGGT GCAGCGAGTGCCGCCTGGCACGGGGCGCCGTGCCCCCCGGT Direct Gain 0 0.959981676063892 0 0.938890933990479 prediction 0.919963352127784 Functional Gain - SLC35E4 ENSG00000100036 CDS Human protein_coding chr22:31032741 chr22:31032741 nonsynonymous SNV 0.875 0 21 hm5C_associated_SNPs_130655 0 0 0 0 0 exosome 0 0.500231643921093 0.877781867980958 0.0004632878421853 hm5C_site_50713 DeepMRMD:0.877781867980958;iRNA_m5C:0.0004632878421853 50714 chr11 1268797 1268797 1 + A G LUSC 1268797 - 1268777 1268817 41 CGTGGTCACCACCGTGGTTATGGGGGCCGATGTGGGGCTGC CGTGGTCACCACCGTGGTTACGGGGGCCGATGTGGGGCTGC Direct Gain 0 0.959972593363115 0 0.883321762084961 prediction 0.91994518672623 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1268797 chr11:1268797 nonsynonymous SNV 0.009 0 21 hm5C_associated_SNPs_130656 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921096 0.766643524169922 0.00046328784219174 hm5C_site_50714 DeepMRMD:0.766643524169922;iRNA_m5C:0.00046328784219174 50715 chr1 23240114 23240114 1 + C G rs140655693 23240114 - 23240094 23240134 41 ACCAGGAGGGCCGGCACGTGGGGCAGAGGGGGCGGGGCTTG ACCAGGAGGGCCGGCACGTGCGGCAGAGGGGGCGGGGCTTG Direct Gain 0 0.959962956728002 0 0.833463132381439 prediction 0.919925913456003 Functional Gain - EPHB2 ENSG00000133216 UTR3 Human protein_coding chr1:23240114 chr1:23240114 . . 0 21 hm5C_associated_SNPs_130657 0 0 0 0 0 Endoplasmic reticulum 0 0.50023164390162 0.666926264762878 0.000463287803240231 hm5C_site_50715 DeepMRMD:0.666926264762878;iRNA_m5C:0.000463287803240231 50716 chrX 10126431 10126431 1 + C G rs1061287 10126431 - 10126411 10126451 41 AGGGAGGTGTGCGCGGGGTGGGGGGAAGACCCTGGAAGTCC AGGGAGGTGTGCGCGGGGTGCGGGGAAGACCCTGGAAGTCC Direct Gain 0 0.959937992684044 0 0.903274595737457 prediction 0.919875985368088 Functional Gain - CLCN4 ENSG00000073464 UTR5 Human protein_coding chrX:10126431 chrX:10126431 . . 0 21 hm5C_associated_SNPs_130658 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.806549191474914 0.000463287842184856 hm5C_site_50716 DeepMRMD:0.806549191474914;iRNA_m5C:0.000463287842184856 50717 chr19 7711534 7711534 1 + A G rs572480735 7711534 - 7711514 7711554 41 ATGGTGCTGCCCTGGGATCCTGGGAAGGCCAGGGCTGGGGC ATGGTGCTGCCCTGGGATCCCGGGAAGGCCAGGGCTGGGGC Direct Gain 0 0.959933970764214 0 0.936739385128021 prediction 0.919867941528429 Functional Gain - STXBP2 ENSG00000076944 intronic Human protein_coding chr19:7711534 chr19:7711534 . . 0 21 hm5C_associated_SNPs_130659 0 0 0 0 0 chromatin 0 0.500231645619996 0.873478770256042 0.000463291239992447 hm5C_site_50717 DeepMRMD:0.873478770256042;iRNA_m5C:0.000463291239992447 50718 chr12 7045638 7045638 1 + A G OV 7045638 - 7045618 7045658 41 GGGGGTAGCTGGGCAATGCCTGGGAAGCTGGGAAGGGGGAG GGGGGTAGCTGGGCAATGCCCGGGAAGCTGGGAAGGGGGAG Direct Gain 0 0.959929510407564 0 0.896079659461975 prediction 0.919859020815129 Functional Gain - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7045638 chr12:7045638 nonsynonymous SNV 0.943 3 21 hm5C_associated_SNPs_130660 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.79215931892395 0.000463287842184856 hm5C_site_50718 DeepMRMD:0.79215931892395;iRNA_m5C:0.000463287842184856 50719 chr11 122684355 122684355 1 + G C rs11218828 122684355 + 122684335 122684375 41 AGTCTAAAAGGCTGCATTGCGGGGAGAGATGAGACAGGCAG AGTCTAAAAGGCTGCATTGCCGGGAGAGATGAGACAGGCAG Direct Gain 0 0.959911633851485 0 0.894636511802673 prediction 0.919823267702971 Functional Gain - UBASH3B ENSG00000154127 UTR3 Human protein_coding chr11:122684355 chr11:122684355 . . 0 21 hm5C_associated_SNPs_130661 0 0 0 0 0 Ribosome 0 0.500231645806171 0.789273023605346 0.000463291612341488 hm5C_site_50719 DeepMRMD:0.789273023605346;iRNA_m5C:0.000463291612341488 50720 chr7 141618791 141618791 1 + T C DLBC 141618791 + 141618771 141618811 41 TTTCTACTTGGTGACATTAATGGGAAACACAGTCATCATCA TTTCTACTTGGTGACATTAACGGGAAACACAGTCATCATCA Direct Gain 0 0.959894102648744 0 0.926106572151184 prediction 0.919788205297488 Functional Gain - OR9A4 ENSG00000258083 CDS Human protein_coding chr7:141618791 chr7:141618791 nonsynonymous SNV 0.947 0 21 hm5C_associated_SNPs_130662 0 0 0 0 0 unknown 0 0.500231637287257 0.852213144302368 0.000463274574513006 hm5C_site_50720 DeepMRMD:0.852213144302368;iRNA_m5C:0.000463274574513006 50721 chr15 38776569 38776569 1 + T C rs75760193 38776569 + 38776549 38776589 41 GGCGGCGGTGGAAGGGGTGGTTGGGGTGGTGGTGGTGGAGG GGCGGCGGTGGAAGGGGTGGCTGGGGTGGTGGTGGTGGAGG Direct Gain 0 0.959838828329074 0 0.738037109375 prediction 0.919677656658149 Functional Gain - FAM98B ENSG00000171262 CDS Human protein_coding chr15:38776569 chr15:38776569 synonymous SNV . 0 21 hm5C_associated_SNPs_130663 0 0 1 0 0 Cytosol 0 0.500231643696751 0.47607421875 0.00046328739350221 hm5C_site_50721 DeepMRMD:0.47607421875;iRNA_m5C:0.00046328739350221 50722 chr19 44337696 44337696 1 + T C rs190134631 44337696 + 44337676 44337716 41 CCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAA CCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAA Direct Gain 0 0.95981163755017 0 0.853366792201996 prediction 0.919623275100339 Functional Gain - ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44337696 chr19:44337696 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_130664 0 0 0 0 2 Nucleus 0 0.500231643920805 0.706733584403992 0.000463287841609761 hm5C_site_50722 DeepMRMD:0.706733584403992;iRNA_m5C:0.000463287841609761 50723 chr6 80816461 80816461 1 + A C rs376293687 80816461 + 80816441 80816481 41 CTACTCAGGCTCAGGGCGGCAGGGGCTGAGGGGCACTGGCG CTACTCAGGCTCAGGGCGGCCGGGGCTGAGGGGCACTGGCG Direct Gain 0 0.9597856955057 0 0.801218807697296 prediction 0.9195713910114 Functional Gain - BCKDHB ENSG00000083123 CDS Human protein_coding chr6:80816461 chr6:80816461 synonymous SNV . 0 21 hm5C_associated_SNPs_130665 2 0 0 0 0 Ribosome 0 0.500231643173231 0.602437615394592 0.000463286346461311 hm5C_site_50723 DeepMRMD:0.602437615394592;iRNA_m5C:0.000463286346461311 Maple syrup urine disease Maple syrup urine disease 50724 chr17 48356590 48356590 1 + C G OV 48356590 - 48356570 48356610 41 TGTAGGGAGGGGGTGGCTCTGTGGGAGTTGGGCCCAGGCTG TGTAGGGAGGGGGTGGCTCTCTGGGAGTTGGGCCCAGGCTG Direct Gain 0 0.959672349553117 0 0.923312544822693 prediction 0.919344699106234 Functional Gain - TMEM92 ENSG00000167105 CDS Human protein_coding chr17:48356590 chr17:48356590 nonsynonymous SNV 0.161 1 21 hm5C_associated_SNPs_130666 0 0 0 0 0 nucleolus 0 0.500231643921092 0.846625089645386 0.000463287842184856 hm5C_site_50724 DeepMRMD:0.846625089645386;iRNA_m5C:0.000463287842184856 50725 chr1 117484514 117484514 1 + T C UCEC 117484514 + 117484494 117484534 41 GCTTGCAAGCACCTGGGAGGTGGGGTTCCCAGCCCAGCTGT GCTTGCAAGCACCTGGGAGGCGGGGTTCCCAGCCCAGCTGT Direct Gain 0 0.959663517545605 0 0.961128950119019 prediction 0.91932703509121 Functional Gain - PTGFRN ENSG00000134247 CDS Human protein_coding chr1:117484514 chr1:117484514 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_130667 0 0 1 0 0 Ribosome 0 0.500231643921092 0.922257900238038 0.000463287842184856 hm5C_site_50725 DeepMRMD:0.922257900238038;iRNA_m5C:0.000463287842184856 50726 chr18 76754699 76754699 1 + A G HNSC 76754699 - 76754679 76754719 41 TGGGGGCCGGCGACAGGGCCTGCGAGGACGAGGACTCGGAC TGGGGGCCGGCGACAGGGCCCGCGAGGACGAGGACTCGGAC Direct Gain 0 0.959646233890303 0 0.484874874353409 prediction 0.919292467780607 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76754699 chr18:76754699 nonsynonymous SNV 0.010 0 21 hm5C_associated_SNPs_130668 0 0 0 0 0 exosome 0 0.500234488221596 0 0.000468976443192437 hm5C_site_50726 DeepMRMD:0;iRNA_m5C:0.000468976443192437 50727 chr15 44829435 44829435 1 + G C BLCA 44829435 + 44829415 44829455 41 CGGGGGACTCGGACTCCTGGGGTGAGGAGAAGTTGCTGGGG CGGGGGACTCGGACTCCTGGCGTGAGGAGAAGTTGCTGGGG Direct Gain 0 0.959644001661675 0 0.789503812789917 prediction 0.919288003323349 Functional Gain - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44829435 chr15:44829435 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130669 0 0 1 0 1 Ribosome 0 0.500231631444609 0.579007625579834 0.000463262889217164 hm5C_site_50727 DeepMRMD:0.579007625579834;iRNA_m5C:0.000463262889217164 50728 chr1 62675752 62675752 1 + G C BLCA 62675752 + 62675732 62675772 41 CCTCAGGGCTAGAGGAGGAAGAGGAACAGACTTCAGAACAG CCTCAGGGCTAGAGGAGGAACAGGAACAGACTTCAGAACAG Direct Gain 0 0.959638961494505 0 0.473012953996658 prediction 0.91927792298901 Functional Gain - L1TD1 ENSG00000240563 CDS Human protein_coding chr1:62675752 chr1:62675752 nonsynonymous SNV 0.018 1 21 hm5C_associated_SNPs_130670 0 0 0 0 0 Nucleus 0 0.500231643824182 0 0.000463287648363897 hm5C_site_50728 DeepMRMD:0;iRNA_m5C:0.000463287648363897 50729 chr13 29252193 29252193 1 + T C UCEC 29252193 + 29252173 29252213 41 TCCATCACAAAGCGAAGTCATGGGAGAGCCACACTTGATGG TCCATCACAAAGCGAAGTCACGGGAGAGCCACACTTGATGG Direct Gain 0 0.959637601034662 0 0.91568922996521 prediction 0.919275202069323 Functional Gain - POMP ENSG00000132963 CDS Human protein_coding chr13:29252193 chr13:29252193 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_130671 0 0 1 0 1 Ribosome 0 0.500231752462706 0.83137845993042 0.000463504925411584 hm5C_site_50729 DeepMRMD:0.83137845993042;iRNA_m5C:0.000463504925411584 50730 chr6 47775964 47775964 1 + T C rs150360785 47775964 + 47775944 47775984 41 GTGTCTGTGTGGTCAGCTTTTGGAAGGCCAGACTCCATTCC GTGTCTGTGTGGTCAGCTTTCGGAAGGCCAGACTCCATTCC Direct Gain 0 0.959636454323491 0 0.958657741546631 prediction 0.919272908646981 Functional Gain - OPN5 ENSG00000124818 CDS Human protein_coding chr6:47775964 chr6:47775964 synonymous SNV . 0 21 hm5C_associated_SNPs_130672 0 0 0 0 1 exosome 0 0.500231643921092 0.917315483093262 0.000463287842184856 hm5C_site_50730 DeepMRMD:0.917315483093262;iRNA_m5C:0.000463287842184856 50731 chr19 1004724 1004724 1 + A G rs11880849 1004724 - 1004704 1004744 41 GGCCAGACCTGGGCACCCTGTGGGGGCGGGGGCCGTGCAGA GGCCAGACCTGGGCACCCTGCGGGGGCGGGGGCCGTGCAGA Direct Gain 0 0.959632700173705 0 0.988040685653687 prediction 0.919265400347409 Functional Gain - GRIN3B ENSG00000116032 CDS Human protein_coding chr19:1004724 chr19:1004724 synonymous SNV . 0 21 hm5C_associated_SNPs_130673 0 0 0 0 0 chromatin 0 0.50023164392119 0.976081371307374 0.000463287842379589 hm5C_site_50731 DeepMRMD:0.976081371307374;iRNA_m5C:0.000463287842379589 50732 chr18 19203799 19203799 1 + G C BLCA 19203799 + 19203779 19203819 41 GCTGGAAACGCTGAGTATTCGAGGAAATAACATTCGGTATT GCTGGAAACGCTGAGTATTCCAGGAAATAACATTCGGTATT Direct Gain 0 0.959626468949268 0 0.807859480381012 prediction 0.919252937898537 Functional Gain - SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19203799 chr18:19203799 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130674 0 0 1 0 1 Ribosome 0 0.500231643908643 0.615718960762024 0.000463287817286995 hm5C_site_50732 DeepMRMD:0.615718960762024;iRNA_m5C:0.000463287817286995 50733 chr14 39650297 39650297 1 + G C CESC 39650297 + 39650277 39650317 41 AAAAGGAGTCTGAGGAAAAAGAAGAAAAAGAATCTGAGCCC AAAAGGAGTCTGAGGAAAAACAAGAAAAAGAATCTGAGCCC Direct Gain 0 0.959624736978003 0 0.693581104278564 prediction 0.919249473956006 Functional Gain - PNN ENSG00000100941 CDS Human protein_coding chr14:39650297 chr14:39650297 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130675 0 0 1 0 0 Nucleus 0 0.500231653774717 0.387162208557128 0.000463307549434022 hm5C_site_50733 DeepMRMD:0.387162208557128;iRNA_m5C:0.000463307549434022 50734 chr7 1785470 1785470 1 + C G HNSC 1785470 - 1785450 1785490 41 TGATGTAGTGGGTGGCCGTGGAGGGGCTGGGCACCGGACCA TGATGTAGTGGGTGGCCGTGCAGGGGCTGGGCACCGGACCA Direct Gain 0 0.9596150018168 0 0.906915664672852 prediction 0.9192300036336 Functional Gain - ELFN1 ENSG00000225968 CDS Human protein_coding chr7:1785470 chr7:1785470 nonsynonymous SNV 0.776 3 21 hm5C_associated_SNPs_130676 0 0 0 0 0 chromatin 0 0.500231643921087 0.813831329345704 0.000463287842173532 hm5C_site_50734 DeepMRMD:0.813831329345704;iRNA_m5C:0.000463287842173532 50735 chr17 4835939 4835939 1 + T G STAD 4835939 - 4835919 4835959 41 ACAGATGGGGTGGGGGTGTAAGGGGCTTGGCAGCAGGAGCA ACAGATGGGGTGGGGGTGTACGGGGCTTGGCAGCAGGAGCA Direct Gain 0 0.959597586193365 0 0.880740165710449 prediction 0.919195172386729 Functional Gain - GP1BA ENSG00000185245 CDS Human protein_coding chr17:4835939 chr17:4835939 nonsynonymous SNV 0.137 1 21 hm5C_associated_SNPs_130677 0 0 1 0 0 exosome 0 0.500231643921092 0.761480331420898 0.000463287842184856 hm5C_site_50735 DeepMRMD:0.761480331420898;iRNA_m5C:0.000463287842184856 50736 chr19 52095091 52095091 1 + A G rs369243078 52095091 - 52095071 52095111 41 AGGCGGAGCTTGCAGTGAGCTGAGATCGTGCCACTGCACTC AGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTC Direct Gain 0 0.959594830628336 0 0.842032253742218 prediction 0.919189661256672 Functional Gain - LINC01530 ENSG00000167765 UTR3 Human other chr19:52095091 chr19:52095091 . . 0 21 hm5C_associated_SNPs_130678 0 0 0 0 0 unknown 0 0.500231749686963 0.684064507484436 0.000463499373926979 hm5C_site_50736 DeepMRMD:0.684064507484436;iRNA_m5C:0.000463499373926979 50737 chr6 3264488 3264488 1 + G C LIHC 3264488 + 3264468 3264508 41 CTGTGAGTGTGGCGTAGAGTGGGGATTAAGCAAAGGTCATG CTGTGAGTGTGGCGTAGAGTCGGGATTAAGCAAAGGTCATG Direct Gain 0 0.95958530597921 0 0.892439186573029 prediction 0.91917061195842 Functional Gain - PSMG4 ENSG00000180822 CDS Human protein_coding chr6:3264488 chr6:3264488 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130679 0 0 1 0 2 Cytosol 0 0.500231514196233 0.784878373146058 0.000463028392465592 hm5C_site_50737 DeepMRMD:0.784878373146058;iRNA_m5C:0.000463028392465592 50738 chr1 248367283 248367283 1 + T C SKCM 248367283 + 248367263 248367303 41 CAGAGCATTCATGAAGATCTTAGGAAAGGGCAAGTCTGGAG CAGAGCATTCATGAAGATCTCAGGAAAGGGCAAGTCTGGAG Direct Gain 0 0.959561332507892 0 0.696172177791595 prediction 0.919122665015784 Functional Gain - OR2M3 ENSG00000228198 CDS Human protein_coding chr1:248367283 chr1:248367283 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_130680 0 0 0 0 0 exosome 0 0.500231643921095 0.39234435558319 0.000463287842190407 hm5C_site_50738 DeepMRMD:0.39234435558319;iRNA_m5C:0.000463287842190407 50739 chr9 137300143 137300143 1 + C G BLCA 137300143 - 137300123 137300163 41 CCCCCACAGCAGCGGTACCTGAGGAGCGGTCCCCGCAGATG CCCCCACAGCAGCGGTACCTCAGGAGCGGTCCCCGCAGATG Direct Gain 0 0.959558845061158 0 0.913253664970398 prediction 0.919117690122315 Functional Gain - RXRA ENSG00000186350 CDS Human protein_coding chr9:137300143 chr9:137300143 stopgain 0.989 1 21 hm5C_associated_SNPs_130681 0 0 0 0 0 Cytosol 0 0.500231643921288 0.826507329940796 0.000463287842576321 hm5C_site_50739 DeepMRMD:0.826507329940796;iRNA_m5C:0.000463287842576321 50740 chr18 48405467 48405467 1 + C G rs574231246 48405467 - 48405447 48405487 41 AGGGGAGGGCGCGAGGAGCCGGCCAGCCGCGGGGCCCGGAA AGGGGAGGGCGCGAGGAGCCCGCCAGCCGCGGGGCCCGGAA Direct Gain 0 0.959536804941937 0 0.917569160461426 prediction 0.919073609883873 Functional Gain - ME2 ENSG00000082212 UTR5 Human protein_coding chr18:48405467 chr18:48405467 . . 0 21 hm5C_associated_SNPs_130682 0 0 0 0 0 Ribosome 0 0.500231643921092 0.835138320922852 0.000463287842184856 hm5C_site_50740 DeepMRMD:0.835138320922852;iRNA_m5C:0.000463287842184856 50741 chr15 41657737 41657737 1 + G C BLCA 41657737 + 41657717 41657757 41 AGTCAGAGTACCTTGGGTCTGAAGGGGTCACTCAAGCGCTC AGTCAGAGTACCTTGGGTCTCAAGGGGTCACTCAAGCGCTC Direct Gain 0 0.959511067146366 0 0.861107051372528 prediction 0.919022134292731 Functional Gain - NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41657737 chr15:41657737 synonymous SNV . 0 21 hm5C_associated_SNPs_130683 0 0 1 0 1 Nucleus 0 0.500231643921092 0.722214102745056 0.000463287842184856 hm5C_site_50741 DeepMRMD:0.722214102745056;iRNA_m5C:0.000463287842184856 50742 chr11 60689575 60689575 1 + G C BLCA 60689575 + 60689555 60689595 41 GAGGGCTGGAACGCCAGGTGGAGGAGCTGCGCTGGCGCCAG GAGGGCTGGAACGCCAGGTGCAGGAGCTGCGCTGGCGCCAG Direct Gain 0 0.959510275959133 0 0.92018723487854 prediction 0.919020551918266 Functional Gain - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60689575 chr11:60689575 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130684 0 0 1 0 0 Ribosome 0 0.500231560701551 0.84037446975708 0.00046312140310123 hm5C_site_50742 DeepMRMD:0.84037446975708;iRNA_m5C:0.00046312140310123 50743 chr16 30594115 30594115 1 + G C BLCA 30594115 + 30594095 30594135 41 GAGTGAATGCGCCGGTGACTGAGGAGGAGGGAAGAATAGGT GAGTGAATGCGCCGGTGACTCAGGAGGAGGGAAGAATAGGT Direct Gain 0 0.95948174913245 0 0.890611886978149 prediction 0.9189634982649 Functional Gain - ZNF785 ENSG00000197162 CDS Human protein_coding chr16:30594115 chr16:30594115 stopgain . 0 21 hm5C_associated_SNPs_130685 0 0 0 0 0 Nucleus 0 0.500231643912685 0.781223773956298 0.000463287825369862 hm5C_site_50743 DeepMRMD:0.781223773956298;iRNA_m5C:0.000463287825369862 50744 chr2 37429544 37429544 1 + T C rs527394753 37429544 + 37429524 37429564 41 ACACCAGTAATCTCAGCACTTTGGGAGGCCGAGGCAGGCGG ACACCAGTAATCTCAGCACTCTGGGAGGCCGAGGCAGGCGG Direct Gain 0 0.95946218579919 0 0.95251202583313 prediction 0.918924371598379 Functional Gain - CEBPZOS ENSG00000218739 UTR3 Human protein_coding chr2:37429544 chr2:37429544 . . 0 21 hm5C_associated_SNPs_130686 0 0 0 0 0 Ribosome 0 0.500231643921206 0.90502405166626 0.000463287842412008 hm5C_site_50744 DeepMRMD:0.90502405166626;iRNA_m5C:0.000463287842412008 50745 chr9 140127073 140127073 1 + C G HNSC 140127073 - 140127053 140127093 41 CCGAGGAGCCCGCAGGCCTTGAGGACGCTGCCGGCCACGCG CCGAGGAGCCCGCAGGCCTTCAGGACGCTGCCGGCCACGCG Direct Gain 0 0.959455509941738 0 0.888043642044067 prediction 0.918911019883476 Functional Gain - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140127073 chr9:140127073 synonymous SNV . 0 21 hm5C_associated_SNPs_130687 0 0 0 0 0 exosome 0 0.500231643921092 0.776087284088134 0.000463287842184856 hm5C_site_50745 DeepMRMD:0.776087284088134;iRNA_m5C:0.000463287842184856 50746 chr6 146755338 146755338 1 + A G rs140244084 146755338 - 146755318 146755358 41 AGGAAGAGGGGGGTCTCCTCTGCGGTCAGGTGGGACGGCAG AGGAAGAGGGGGGTCTCCTCCGCGGTCAGGTGGGACGGCAG Direct Gain 0 0.959425085750425 0 0.881123840808868 prediction 0.91885017150085 Functional Gain - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146755338 chr6:146755338 synonymous SNV . 0 21 hm5C_associated_SNPs_130688 0 0 0 0 0 exosome 0 0.500231643921093 0.762247681617736 0.000463287842185078 hm5C_site_50746 DeepMRMD:0.762247681617736;iRNA_m5C:0.000463287842185078 50747 chr12 16052915 16052915 1 + G C CESC 16052915 + 16052895 16052935 41 AACTCTATGCCAGTGGTTCAGAAGATGGAACATTGAGACTA AACTCTATGCCAGTGGTTCACAAGATGGAACATTGAGACTA Direct Gain 0 0.959380509818359 0 0.648860096931458 prediction 0.918761019636718 Functional Gain - STRAP ENSG00000023734 CDS Human protein_coding chr12:16052915 chr12:16052915 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130689 0 0 1 0 2 Ribosome 0 0.500231644220884 0.297720193862916 0.000463288441768128 hm5C_site_50747 DeepMRMD:0.297720193862916;iRNA_m5C:0.000463288441768128 50748 chr6 146755553 146755553 1 + C G rs79336287 146755553 - 146755533 146755573 41 GCAGGTGCTGCGGAGGTGGCGGGGGCGGGTACAGGGACCGC GCAGGTGCTGCGGAGGTGGCCGGGGCGGGTACAGGGACCGC Direct Gain 0 0.959361961395293 0 0.891191840171814 prediction 0.918723922790586 Functional Gain - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146755553 chr6:146755553 nonsynonymous SNV 0.904 1 21 hm5C_associated_SNPs_130690 0 0 0 0 0 exosome 0 0.500231643922193 0.782383680343628 0.000463287844385984 hm5C_site_50748 DeepMRMD:0.782383680343628;iRNA_m5C:0.000463287844385984 50749 chr17 43698040 43698040 1 + G C rs555506576 43698040 + 43698020 43698060 41 CCTGAGGGCCTGGCTGCCCGGGGGGCGGGCCGGGGCCGCGG CCTGAGGGCCTGGCTGCCCGCGGGGCGGGCCGGGGCCGCGG Direct Gain 0 0.959315336166747 0 0.946172595024109 prediction 0.918630672333494 Functional Gain - LINC02210 ENSG00000204650 ncRNA_exonic Human transcribed_unitary_pseudogene chr17:43698040 chr17:43698040 . . 0 21 hm5C_associated_SNPs_130691 0 0 1 0 0 unknown 0 0.500231646749287 0.892345190048218 0.000463293498574213 hm5C_site_50749 DeepMRMD:0.892345190048218;iRNA_m5C:0.000463293498574213 50750 chr4 140375145 140375145 1 + G C rs13126617 140375145 + 140375125 140375165 41 GGCCGCGGGCAGGCGGCTCCGTGCGGCGGGGCGGGCGGGTG GGCCGCGGGCAGGCGGCTCCCTGCGGCGGGGCGGGCGGGTG Direct Gain 0 0.959269444447488 0 0.68423867225647 prediction 0.918538888894975 Functional Gain - RAB33B ENSG00000273247 ncRNA_exonic Human antisense chr4:140375145 chr4:140375145 . . 0 21 hm5C_associated_SNPs_130692 1 0 1 0 0 Nucleus 0 0.500231643920157 0.36847734451294 0.000463287840313242 hm5C_site_50750 DeepMRMD:0.36847734451294;iRNA_m5C:0.000463287840313242 Smith-McCort dysplasia Smith-McCort dysplasia 50751 chr2 207176120 207176120 1 + C G LUAD 207176120 - 207176100 207176140 41 CCGCACAGGTCGCTTTGGAGGAGGATTTGCCATAGCGCTTG CCGCACAGGTCGCTTTGGAGCAGGATTTGCCATAGCGCTTG Direct Gain 0 0.959246534019108 0 0.841402173042297 prediction 0.918493068038216 Functional Gain - ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207176120 chr2:207176120 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130693 0 0 0 0 0 Nucleus 0 0.500231635136388 0.682804346084594 0.00046327027277604 hm5C_site_50751 DeepMRMD:0.682804346084594;iRNA_m5C:0.00046327027277604 50752 chrX 123044603 123044603 1 + A G rs185763794 123044603 - 123044583 123044623 41 GCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCA GCCTCAGCCTCCCGAGTAGCCGGGACTACAGGCGCCCGCCA Direct Gain 0 0.959221786919446 0 0.96226167678833 prediction 0.918443573838893 Functional Gain - XIAP ENSG00000101966 UTR3 Human protein_coding chrX:123044603 chrX:123044603 . . 0 21 hm5C_associated_SNPs_130694 0 0 0 0 0 Cytosol 0 0.500231643921092 0.92452335357666 0.000463287842184856 hm5C_site_50752 DeepMRMD:0.92452335357666;iRNA_m5C:0.000463287842184856 50753 chr15 91423431 91423431 1 + A G LUAD 91423431 - 91423411 91423451 41 CCAGGTCGCCACGGCGATTATAGGACAGGGTGAGCCGCGCC CCAGGTCGCCACGGCGATTACAGGACAGGGTGAGCCGCGCC Direct Gain 0 0.959218625730776 0 0.748008847236633 prediction 0.918437251461551 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91423431 chr15:91423431 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_130695 0 0 0 0 0 Ribosome 0 0.500231643916738 0.496017694473266 0.000463287833475601 hm5C_site_50753 DeepMRMD:0.496017694473266;iRNA_m5C:0.000463287833475601 50754 chr12 132504700 132504700 1 + C G CESC 132504700 - 132504680 132504720 41 TCCTCGAAGCGGGCCCTGTGGAGCAGCAGAGGCCGTGGTGG TCCTCGAAGCGGGCCCTGTGCAGCAGCAGAGGCCGTGGTGG Direct Gain 0 0.959218060243808 0 0.603908181190491 prediction 0.918436120487617 Functional Gain - EP400 ENSG00000183495 CDS Human protein_coding chr12:132504700 chr12:132504700 nonsynonymous SNV 0.312 2 21 hm5C_associated_SNPs_130696 0 0 0 0 0 Cytosol 0 0.500231643921221 0.207816362380982 0.000463287842441762 hm5C_site_50754 DeepMRMD:0.207816362380982;iRNA_m5C:0.000463287842441762 50755 chr7 156433679 156433679 1 + T C rs74678591 156433679 + 156433659 156433699 41 CGTAGCGGCGCGCAGCCTCCTTGGGGGACTCGGGGTCCTGG CGTAGCGGCGCGCAGCCTCCCTGGGGGACTCGGGGTCCTGG Direct Gain 0 0.959200358932963 0 0.525938272476196 prediction 0.918400717865926 Functional Gain - RNF32 ENSG00000105982 UTR5 Human protein_coding chr7:156433679 chr7:156433679 . . 0 21 hm5C_associated_SNPs_130697 0 0 0 0 1 Cytosol 0 0.500238296968022 0.0518765449523919 0.000476593936044711 hm5C_site_50755 DeepMRMD:0.0518765449523919;iRNA_m5C:0.000476593936044711 50756 chr12 69753776 69753776 1 + T C UCEC 69753776 + 69753756 69753796 41 TTCAAGAGAATGGCCGAATTTGGGCCTGACTCCGGCGGGAG TTCAAGAGAATGGCCGAATTCGGGCCTGACTCCGGCGGGAG Direct Gain 0 0.959170177662529 0 0.811235010623932 prediction 0.918340355325057 Functional Gain - YEATS4 ENSG00000127337 CDS Human protein_coding chr12:69753776 chr12:69753776 synonymous SNV . 0 21 hm5C_associated_SNPs_130698 0 0 1 0 1 Ribosome 0 0.500231643921093 0.622470021247864 0.000463287842185078 hm5C_site_50756 DeepMRMD:0.622470021247864;iRNA_m5C:0.000463287842185078 50757 chr19 54466619 54466619 1 + G C CESC 54466619 + 54466599 54466639 41 GCGGGGGCGGCGGCGCCTCGGAGAAGAAGGACCCCGGCGGC GCGGGGGCGGCGGCGCCTCGCAGAAGAAGGACCCCGGCGGC Direct Gain 0 0.959147647829769 0 0.948067545890808 prediction 0.918295295659538 Functional Gain - CACNG8 ENSG00000142408 CDS Human protein_coding chr19:54466619 chr19:54466619 nonsynonymous SNV 0.618 0 21 hm5C_associated_SNPs_130699 0 0 0 0 1 exosome 0 0.500231643921092 0.896135091781616 0.000463287842184856 hm5C_site_50757 DeepMRMD:0.896135091781616;iRNA_m5C:0.000463287842184856 50758 chr7 87258202 87258202 1 + G C HNSC 87258202 + 87258182 87258222 41 GGTGGCGGCGGAGGCGGCAAGAAAAGCCTGAGCGCCCGCAA GGTGGCGGCGGAGGCGGCAACAAAAGCCTGAGCGCCCGCAA Direct Gain 0 0.959139867919662 0 0.904924750328064 prediction 0.918279735839323 Functional Gain - RUNDC3B ENSG00000105784 CDS Human protein_coding chr7:87258202 chr7:87258202 nonsynonymous SNV 0.969 1 21 hm5C_associated_SNPs_130700 0 0 0 0 1 chromatin 0 0.500231643920996 0.809849500656128 0.000463287841991677 hm5C_site_50758 DeepMRMD:0.809849500656128;iRNA_m5C:0.000463287841991677 50759 chr11 6281245 6281245 1 + C G CESC 6281245 - 6281225 6281265 41 TTGCCCACACTGCTGCTGTTGAGGAGAGGCGCCCCCGGGCG TTGCCCACACTGCTGCTGTTCAGGAGAGGCGCCCCCGGGCG Direct Gain 0 0.959133557514454 0 0.922313928604126 prediction 0.918267115028909 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6281245 chr11:6281245 synonymous SNV . 0 21 hm5C_associated_SNPs_130701 0 0 0 0 0 unknown 0 0.500231643921085 0.844627857208252 0.000463287842170867 hm5C_site_50759 DeepMRMD:0.844627857208252;iRNA_m5C:0.000463287842170867 50760 chrX 151092272 151092272 1 + C G LGG 151092272 - 151092252 151092292 41 CTCCAGGGTGCCAGGGACCAGAGGAGAGGAGGAGGAGACAG CTCCAGGGTGCCAGGGACCACAGGAGAGGAGGAGGAGACAG Direct Gain 0 0.95912526800863 0 0.862889468669891 prediction 0.918250536017259 Functional Gain - MAGEA4 ENSG00000147381 CDS Human protein_coding chrX:151092272 chrX:151092272 nonsynonymous SNV 0.034 0 21 hm5C_associated_SNPs_130702 0 0 0 0 0 unknown 0 0.500231643921092 0.725778937339782 0.000463287842184856 hm5C_site_50760 DeepMRMD:0.725778937339782;iRNA_m5C:0.000463287842184856 50761 chr20 42086540 42086540 1 + T C rs529720695 42086540 + 42086520 42086560 41 GGCGCGCGCGCGCGCCATTGTGTGGCTGGACTCGGCCGCCC GGCGCGCGCGCGCGCCATTGCGTGGCTGGACTCGGCCGCCC Direct Gain 0 0.959109832484422 0 0.854251146316528 prediction 0.918219664968845 Functional Gain - SRSF6 ENSG00000124193 upstream Human protein_coding chr20:42086540 chr20:42086540 . . 0 21 hm5C_associated_SNPs_130703 0 0 1 0 0 Nucleus 0 0.500231633753634 0.708502292633056 0.000463267507267329 hm5C_site_50761 DeepMRMD:0.708502292633056;iRNA_m5C:0.000463267507267329 50762 chr2 220379634 220379634 1 + A G LUAD 220379634 - 220379614 220379654 41 ACAGGGTTCTGCGCAGTCCGTGGGGGCCTGGGCCACAGGCC ACAGGGTTCTGCGCAGTCCGCGGGGGCCTGGGCCACAGGCC Direct Gain 0 0.959088673367097 0 0.965553283691406 prediction 0.918177346734194 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220379634 chr2:220379634 nonsynonymous SNV 0.993 0 21 hm5C_associated_SNPs_130704 0 0 0 0 0 chromatin 0 0.500231643921801 0.931106567382812 0.000463287843602611 hm5C_site_50762 DeepMRMD:0.931106567382812;iRNA_m5C:0.000463287843602611 50763 chr11 70281285 70281285 1 + C G rs185470349 70281285 - 70281265 70281305 41 GGATCCAGGGCGCAGCTCCGGGGGGGGGCTGGGGGCCCTAC GGATCCAGGGCGCAGCTCCGCGGGGGGGCTGGGGGCCCTAC Direct Gain 0 0.95907740530756 0 0.885401010513306 prediction 0.91815481061512 Functional Gain - CTTN ENSG00000085733 UTR3 Human protein_coding chr11:70281285 chr11:70281285 . . 0 21 hm5C_associated_SNPs_130705 0 0 0 0 0 Ribosome 0 0.500231643921092 0.770802021026612 0.000463287842184856 hm5C_site_50763 DeepMRMD:0.770802021026612;iRNA_m5C:0.000463287842184856 50764 chr17 53398174 53398174 1 + G C ESCA 53398174 + 53398154 53398194 41 CGCCAGGAGGTGGCTGACTTGAGGAAGGAGCTGGGCAAATG CGCCAGGAGGTGGCTGACTTCAGGAAGGAGCTGGGCAAATG Direct Gain 0 0.959073128368459 0 0.828323781490326 prediction 0.918146256736919 Functional Gain - HLF ENSG00000108924 CDS Human protein_coding chr17:53398174 chr17:53398174 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_130706 0 0 1 0 0 cytosol 0 0.500231658978791 0.656647562980652 0.000463317957581477 hm5C_site_50764 DeepMRMD:0.656647562980652;iRNA_m5C:0.000463317957581477 50765 chr15 45050939 45050939 1 + G C BLCA 45050939 + 45050919 45050959 41 AAGAGGGGAAAGCCTTGAATGAGGAGATGGAGTTGAATCTG AAGAGGGGAAAGCCTTGAATCAGGAGATGGAGTTGAATCTG Direct Gain 0 0.959007395448496 0 0.939601302146912 prediction 0.918014790896993 Functional Gain - TRIM69 ENSG00000185880 CDS Human protein_coding chr15:45050939 chr15:45050939 nonsynonymous SNV 0.995 0 21 hm5C_associated_SNPs_130707 0 0 0 0 1 Ribosome 0 0.500232342953038 0.879202604293824 0.000464685906076401 hm5C_site_50765 DeepMRMD:0.879202604293824;iRNA_m5C:0.000464685906076401 50766 chr4 66536083 66536083 1 + G C rs552153306 66536083 + 66536063 66536103 41 TGACGGCTGCCGGCCGGTAGGAGCGCGGAGCTGCGCTGCGG TGACGGCTGCCGGCCGGTAGCAGCGCGGAGCTGCGCTGCGG Direct Gain 0 0.95899619092546 0 0.504757642745972 prediction 0.91799238185092 Functional Gain - EPHA5-AS1 ENSG00000250846 ncRNA_exonic Human lincRNA chr4:66536083 chr4:66536083 . . 0 21 hm5C_associated_SNPs_130708 0 0 0 0 0 unknown 0 0.500231647237909 0.00951528549194403 0.000463294475818943 hm5C_site_50766 DeepMRMD:0.00951528549194403;iRNA_m5C:0.000463294475818943 50767 chr1 19970906 19970906 1 + C G rs571437992 19970906 - 19970886 19970926 41 GGTCCTGCGGAGCTGGGTGCGGGGGTCGCGGGCCCGGGCGC GGTCCTGCGGAGCTGGGTGCCGGGGTCGCGGGCCCGGGCGC Direct Gain 0 0.958976028789318 0 0.973315238952637 prediction 0.917952057578636 Functional Gain - NBL1 ENSG00000158747 UTR5 Human protein_coding chr1:19970906 chr1:19970906 . . 0 21 hm5C_associated_SNPs_130709 0 0 0 0 0 Ribosome 0 0.500231643921092 0.946630477905274 0.000463287842184856 hm5C_site_50767 DeepMRMD:0.946630477905274;iRNA_m5C:0.000463287842184856 50768 chr11 111583006 111583006 1 + C G rs55848984 111583006 - 111582986 111583026 41 GCCTCCACGTTGGATGCCTGGGGGAGGAGGGCAGATCGCAG GCCTCCACGTTGGATGCCTGCGGGAGGAGGGCAGATCGCAG Direct Gain 0 0.958876429289093 0 0.851665377616882 prediction 0.917752858578186 Functional Gain - SIK2 ENSG00000170145 CDS Human protein_coding chr11:111583006 chr11:111583006 synonymous SNV . 0 21 hm5C_associated_SNPs_130710 0 0 0 0 0 Cytosol 0 0.50023164392107 0.703330755233764 0.000463287842140669 hm5C_site_50768 DeepMRMD:0.703330755233764;iRNA_m5C:0.000463287842140669 50769 chr7 143771317 143771317 1 + G C rs144442261 143771317 + 143771297 143771337 41 TTTCTTCTACAGGGAAATGGGGGGAAATCAGACTTCCATCA TTTCTTCTACAGGGAAATGGCGGGAAATCAGACTTCCATCA Direct Gain 0 0.958866750011134 0 0.937615156173706 prediction 0.917733500022268 Functional Gain - OR2A25 ENSG00000221933 CDS Human protein_coding chr7:143771317 chr7:143771317 nonsynonymous SNV 0.610 0 21 hm5C_associated_SNPs_130711 0 0 0 0 0 unknown 0 0.500231643921092 0.875230312347412 0.000463287842184856 hm5C_site_50769 DeepMRMD:0.875230312347412;iRNA_m5C:0.000463287842184856 50770 chr19 39871309 39871309 1 + A G UCEC 39871309 - 39871289 39871329 41 TGGGAGGGCCCGGGGAGGCATTGGGAACTGCCGCTGGGTAC TGGGAGGGCCCGGGGAGGCACTGGGAACTGCCGCTGGGTAC Direct Gain 0 0.958845646651848 0 0.819173872470856 prediction 0.917691293303696 Functional Gain - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39871309 chr19:39871309 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130712 0 0 0 0 0 Ribosome 0 0.500231643921093 0.638347744941712 0.000463287842185078 hm5C_site_50770 DeepMRMD:0.638347744941712;iRNA_m5C:0.000463287842185078 50771 chr17 39394674 39394674 1 + A G rs62065317 39394674 - 39394654 39394694 41 GGCAGCAGGGCTGGCAGCAGTTGGAGCCACAGCTCTGGTTT GGCAGCAGGGCTGGCAGCAGCTGGAGCCACAGCTCTGGTTT Direct Gain 0 0.95882385896505 0 0.937907338142395 prediction 0.9176477179301 Functional Gain - KRTAP9-8 ENSG00000187272 CDS Human protein_coding chr17:39394674 chr17:39394674 nonsynonymous SNV 0.413 0 21 hm5C_associated_SNPs_130713 0 0 0 0 0 unknown 0 0.500231643760554 0.87581467628479 0.000463287521107469 hm5C_site_50771 DeepMRMD:0.87581467628479;iRNA_m5C:0.000463287521107469 50772 chr1 146747884 146747884 1 + T C BLCA 146747884 + 146747864 146747904 41 AGAAGGAGGCCATTTTACTCTGGGAGCCCAGAAACCCGCTG AGAAGGAGGCCATTTTACTCCGGGAGCCCAGAAACCCGCTG Direct Gain 0 0.958801443364547 0 0.927015542984009 prediction 0.917602886729093 Functional Gain - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146747884 chr1:146747884 nonsynonymous SNV 0.988 0 21 hm5C_associated_SNPs_130714 0 0 1 0 1 Ribosome 0 0.500231643921092 0.854031085968018 0.000463287842184412 hm5C_site_50772 DeepMRMD:0.854031085968018;iRNA_m5C:0.000463287842184412 50773 chr3 111603461 111603461 1 + G C GBM 111603461 + 111603441 111603481 41 TCTGGCTCGCTCCTGGCCATGTGGAATGGAAGTTCCCTGAG TCTGGCTCGCTCCTGGCCATCTGGAATGGAAGTTCCCTGAG Direct Gain 0 0.95877809386427 0 0.861294984817505 prediction 0.91755618772854 Functional Gain - PHLDB2 ENSG00000144824 CDS Human protein_coding chr3:111603461 chr3:111603461 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130715 0 0 1 0 0 cytosol 0 0.500231643921092 0.72258996963501 0.000463287842184856 hm5C_site_50773 DeepMRMD:0.72258996963501;iRNA_m5C:0.000463287842184856 50774 chr10 44104075 44104075 1 + T C UCEC 44104075 + 44104055 44104095 41 TTTGCAGGGACCGCTGACATTTGGGGATGTGGCTGTGGCCT TTTGCAGGGACCGCTGACATCTGGGGATGTGGCTGTGGCCT Direct Gain 0 0.958773619444566 0 0.853493094444275 prediction 0.917547238889133 Functional Gain - ZNF485 ENSG00000198298 CDS Human protein_coding chr10:44104075 chr10:44104075 nonsynonymous SNV 0.995 3 21 hm5C_associated_SNPs_130716 0 0 0 0 1 chromatin 0 0.500231491325861 0.70698618888855 0.000462982651721955 hm5C_site_50774 DeepMRMD:0.70698618888855;iRNA_m5C:0.000462982651721955 50775 chr1 154962044 154962044 1 + T C LUAD 154962044 + 154962024 154962064 41 CCTGCTTGGCAGGGTCTTCTTTGGGGAAAAAGGTGGCAGGT CCTGCTTGGCAGGGTCTTCTCTGGGGAAAAAGGTGGCAGGT Direct Gain 0 0.958773164861054 0 0.959901213645935 prediction 0.917546329722107 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962044 chr1:154962044 synonymous SNV . 0 21 hm5C_associated_SNPs_130717 0 0 1 0 0 Cytosol 0 0.500231643921092 0.91980242729187 0.000463287842184856 hm5C_site_50775 DeepMRMD:0.91980242729187;iRNA_m5C:0.000463287842184856 50776 chr11 118307454 118307454 1 + G C rs533795027 118307454 + 118307434 118307474 41 CAGCGGGGCTGGGGTTCCAGGGGGAGCGGCCGCCGCCTCAG CAGCGGGGCTGGGGTTCCAGCGGGAGCGGCCGCCGCCTCAG Direct Gain 0 0.958738324487967 0 0.992394804954529 prediction 0.917476648975934 Functional Gain - KMT2A ENSG00000118058 CDS Human protein_coding chr11:118307454 chr11:118307454 nonsynonymous SNV 0.983 1 21 hm5C_associated_SNPs_130718 0 0 1 0 0 Cytosol 0 0.500231643920848 0.984789609909058 0.000463287841695248 hm5C_site_50776 DeepMRMD:0.984789609909058;iRNA_m5C:0.000463287841695248 50777 chr17 79202937 79202937 1 + T C rs142423836 79202937 + 79202917 79202957 41 ACAGCTGCTGGGGCCTCTCTTTGGGCTGTCCGTGCCCCCTG ACAGCTGCTGGGGCCTCTCTCTGGGCTGTCCGTGCCCCCTG Direct Gain 0 0.958676690010864 0 0.959915161132812 prediction 0.917353380021727 Functional Gain - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79202937 chr17:79202937 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130719 0 0 0 0 0 chromatin 0 0.500231539218234 0.919830322265624 0.000463078436468312 hm5C_site_50777 DeepMRMD:0.919830322265624;iRNA_m5C:0.000463078436468312 50778 chr11 376738 376738 1 + C G rs540054440 376738 - 376718 376758 41 CGCACGCGGCGCTGGGGCCCGGGGGGATGCCCGCTGTCCCG CGCACGCGGCGCTGGGGCCCCGGGGGATGCCCGCTGTCCCG Direct Gain 0 0.95867301881212 0 0.96552187204361 prediction 0.91734603762424 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:376738 chr11:376738 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_130720 0 0 0 0 0 chromatin 0 0.50023164448781 0.93104374408722 0.000463288975619758 hm5C_site_50778 DeepMRMD:0.93104374408722;iRNA_m5C:0.000463288975619758 50779 chr1 149858674 149858674 1 + C G COAD 149858674 - 149858654 149858694 41 TCGAGGACCGCCGCCATGTAGACGGGCGCGCCGGCCCCCAC TCGAGGACCGCCGCCATGTACACGGGCGCGCCGGCCCCCAC Direct Gain 0 0.958637360417282 0 0.806838393211365 prediction 0.917274720834564 Functional Gain - HIST2H2AC ENSG00000184260 CDS Human protein_coding chr1:149858674 chr1:149858674 synonymous SNV . 0 21 hm5C_associated_SNPs_130721 0 0 0 0 0 Ribosome 0 0.500231387712081 0.61367678642273 0.000462775424162842 hm5C_site_50779 DeepMRMD:0.61367678642273;iRNA_m5C:0.000462775424162842 50780 chr2 26410228 26410228 1 + C G UCEC 26410228 - 26410208 26410248 41 CCTGGCTGGGCTGTGTGGTTGAGGGTAGGGGACCGGGGGCT CCTGGCTGGGCTGTGTGGTTCAGGGTAGGGGACCGGGGGCT Direct Gain 0 0.958621643011725 0 0.88391375541687 prediction 0.91724328602345 Functional Gain - GAREM2 ENSG00000157833 CDS Human protein_coding chr2:26410228 chr2:26410228 stopgain 0.175 0 21 hm5C_associated_SNPs_130722 0 0 0 0 0 Exosome 0 0.500231643921092 0.76782751083374 0.000463287842184856 hm5C_site_50780 DeepMRMD:0.76782751083374;iRNA_m5C:0.000463287842184856 50781 chr16 68573169 68573169 1 + A C rs191910207 68573169 + 68573149 68573189 41 CGTGGACCCGGGGTTGCAGGAGCGAGGCTCCGAGTGCGCAG CGTGGACCCGGGGTTGCAGGCGCGAGGCTCCGAGTGCGCAG Direct Gain 0 0.958614953361217 0 0.849957048892975 prediction 0.917229906722435 Functional Gain - ZFP90 ENSG00000184939 UTR5 Human protein_coding chr16:68573169 chr16:68573169 . . 0 21 hm5C_associated_SNPs_130723 0 0 0 0 0 Cytosol 0 0.500231643571559 0.69991409778595 0.000463287143117164 hm5C_site_50781 DeepMRMD:0.69991409778595;iRNA_m5C:0.000463287143117164 50782 chr4 81124564 81124564 1 + A C STAD 81124564 + 81124544 81124584 41 ATATGAGGTCGCACCACAAAAAGGAGTATGCGATGGAGCCC ATATGAGGTCGCACCACAAACAGGAGTATGCGATGGAGCCC Direct Gain 0 0.958614262007949 0 0.838497221469879 prediction 0.917228524015897 Functional Gain - PRDM8 ENSG00000152784 CDS Human protein_coding chr4:81124564 chr4:81124564 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130724 0 0 0 0 0 exosome 0 0.500231680104177 0.676994442939758 0.000463360208353247 hm5C_site_50782 DeepMRMD:0.676994442939758;iRNA_m5C:0.000463360208353247 50783 chr9 131482798 131482798 1 + A G LAML 131482798 - 131482778 131482818 41 AGGAGGCTGTGGGGTGCAGGTGGGGTCAGGGCAGGCGGCAG AGGAGGCTGTGGGGTGCAGGCGGGGTCAGGGCAGGCGGCAG Direct Gain 0 0.958604643912983 0 0.969821929931641 prediction 0.917209287825966 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131482798 chr9:131482798 synonymous SNV . 0 21 hm5C_associated_SNPs_130725 0 0 0 0 0 chromatin 0 0.500231643921092 0.939643859863282 0.000463287842184856 hm5C_site_50783 DeepMRMD:0.939643859863282;iRNA_m5C:0.000463287842184856 50784 chr19 41596082 41596082 1 + C G rs112337232 41596082 - 41596062 41596102 41 CCGTGCGTGCCCCGGAGGGCGTCGATGAGGAAGCCCGCCTC CCGTGCGTGCCCCGGAGGGCCTCGATGAGGAAGCCCGCCTC Direct Gain 0 0.958587724227664 0 0.954503893852234 prediction 0.917175448455329 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41596082 chr19:41596082 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130726 0 0 0 0 0 unknown 0 0.500231659600083 0.909007787704468 0.000463319200166401 hm5C_site_50784 DeepMRMD:0.909007787704468;iRNA_m5C:0.000463319200166401 50785 chr2 234858761 234858761 1 + G C BRCA 234858761 + 234858741 234858781 41 GCACGGTGTCCCGGCTGCCTGAGGAGGAGACTGAGAGTTGG GCACGGTGTCCCGGCTGCCTCAGGAGGAGACTGAGAGTTGG Direct Gain 0 0.958583234946971 0 0.840068459510803 prediction 0.917166469893942 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234858761 chr2:234858761 nonsynonymous SNV 0.957 3 21 hm5C_associated_SNPs_130727 0 0 0 0 1 exosome 0 0.500231644512354 0.680136919021606 0.000463289024707381 hm5C_site_50785 DeepMRMD:0.680136919021606;iRNA_m5C:0.000463289024707381 50786 chr1 228879150 228879150 1 + T C LIHC 228879150 + 228879130 228879170 41 TGAGAAATGGGTGCCGGAGATTCGATGCCACTGTCCCAAAG TGAGAAATGGGTGCCGGAGACTCGATGCCACTGTCCCAAAG Direct Gain 0 0.958572983848965 0 0.806287527084351 prediction 0.91714596769793 Functional Gain - RHOU ENSG00000116574 CDS Human protein_coding chr1:228879150 chr1:228879150 nonsynonymous SNV 0.733 4 21 hm5C_associated_SNPs_130728 0 0 1 0 0 Ribosome 0 0.500231643989065 0.612575054168702 0.000463287978130333 hm5C_site_50786 DeepMRMD:0.612575054168702;iRNA_m5C:0.000463287978130333 50787 chr19 7076407 7076407 1 + G C LUSC 7076407 + 7076387 7076427 41 TTTAGGGCTTGGTGACCTTTGAGGATGTGGCCGTGGAGTTC TTTAGGGCTTGGTGACCTTTCAGGATGTGGCCGTGGAGTTC Direct Gain 0 0.958570570788188 0 0.869819521903992 prediction 0.917141141576375 Functional Gain - ZNF557 ENSG00000130544 CDS Human protein_coding chr19:7076407 chr19:7076407 nonsynonymous SNV 0.743 0 21 hm5C_associated_SNPs_130729 0 0 1 0 1 Cytosol 0 0.50023164290899 0.739639043807984 0.000463285817979164 hm5C_site_50787 DeepMRMD:0.739639043807984;iRNA_m5C:0.000463285817979164 50788 chr9 91964790 91964790 1 + A G UCEC 91964790 - 91964770 91964810 41 TGGTGTGATTGGGAGCAAGGTGGGAGGCCTCTGTGTCCCTC TGGTGTGATTGGGAGCAAGGCGGGAGGCCTCTGTGTCCCTC Direct Gain 0 0.958559376024555 0 0.825007140636444 prediction 0.917118752049109 Functional Gain - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91964790 chr9:91964790 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_130730 0 0 0 0 0 Cytosol 0 0.500231643921092 0.650014281272888 0.000463287842184856 hm5C_site_50788 DeepMRMD:0.650014281272888;iRNA_m5C:0.000463287842184856 50789 chr6 74072918 74072918 1 + T C LAML 74072918 + 74072898 74072938 41 GAGGCTGAGATCTTGGTATTTGGGAGGCCTTCTTACCAGGA GAGGCTGAGATCTTGGTATTCGGGAGGCCTTCTTACCAGGA Direct Gain 0 0.958539356473375 0 0.951452136039734 prediction 0.917078712946751 Functional Gain - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072918 chr6:74072918 synonymous SNV . 0 21 hm5C_associated_SNPs_130731 0 0 0 0 1 unknown 0 0.500231643921092 0.902904272079468 0.000463287842184856 hm5C_site_50789 DeepMRMD:0.902904272079468;iRNA_m5C:0.000463287842184856 50790 chr22 50921383 50921383 1 + C G rs61732427 50921383 - 50921363 50921403 41 GCTCAGCTGCAGCTCTGGACGGGGGCACAGCACCCTGGCTG GCTCAGCTGCAGCTCTGGACCGGGGCACAGCACCCTGGCTG Direct Gain 0 0.958535719048376 0 0.972128927707672 prediction 0.917071438096752 Functional Gain - ADM2 ENSG00000128165 CDS Human protein_coding chr22:50921383 chr22:50921383 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_130732 0 0 0 0 0 nucleolus 0 0.50023164382593 0.944257855415344 0.000463287651860878 hm5C_site_50790 DeepMRMD:0.944257855415344;iRNA_m5C:0.000463287651860878 50791 chr12 2797877 2797877 1 + A G HNSC 2797877 - 2797857 2797897 41 CCCAGCCTGGCTGGGCACCATGAGGGAGACGGGCCGGACTC CCCAGCCTGGCTGGGCACCACGAGGGAGACGGGCCGGACTC Direct Gain 0 0.958533064331008 0 0.901398777961731 prediction 0.917066128662016 Functional Gain - CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2797877 chr12:2797877 nonsynonymous SNV 0.950 0 21 hm5C_associated_SNPs_130733 0 0 0 0 0 Cytosol 0 0.500231643918098 0.802797555923462 0.000463287836196091 hm5C_site_50791 DeepMRMD:0.802797555923462;iRNA_m5C:0.000463287836196091 50792 chr6 157150496 157150496 1 + A G rs17318151 157150496 - 157150476 157150516 41 AGTCCGACCCTGGATGCCAATTGGATACCGCTGTGGGCCTG AGTCCGACCCTGGATGCCAACTGGATACCGCTGTGGGCCTG Direct Gain 0 0.958515719508871 0 0.898589849472046 prediction 0.917031439017742 Functional Gain - ARID1B ENSG00000049618 CDS Human protein_coding chr6:157150496 chr6:157150496 nonsynonymous SNV 0.037 0 21 hm5C_associated_SNPs_130734 1 0 0 0 0 Ribosome 0 0.500231643921092 0.797179698944092 0.000463287842184856 hm5C_site_50792 DeepMRMD:0.797179698944092;iRNA_m5C:0.000463287842184856 not specified not specified 50793 chr20 5454467 5454467 1 + T C UCEC 5454467 + 5454447 5454487 41 GAAGATGGACCCTGGCCACATGGGATGGTCAGACACGCCTG GAAGATGGACCCTGGCCACACGGGATGGTCAGACACGCCTG Direct Gain 0 0.95850925709966 0 0.915686845779419 prediction 0.91701851419932 Functional Gain - LOC643406 ENSG00000230563 ncRNA_exonic Human lincRNA chr20:5454467 chr20:5454467 . . 0 21 hm5C_associated_SNPs_130735 0 0 0 0 0 unknown 0 0.500231643921101 0.831373691558838 0.000463287842202398 hm5C_site_50793 DeepMRMD:0.831373691558838;iRNA_m5C:0.000463287842202398 50794 chr7 149736490 149736490 1 + G C rs556094452 149736490 + 149736470 149736510 41 CCTAAGAACCCGGGGGGGAAGAGGGACTGGCTCTCAGTCCC CCTAAGAACCCGGGGGGGAACAGGGACTGGCTCTCAGTCCC Direct Gain 0 0.958487342354186 0 0.729449272155762 prediction 0.916974684708371 Functional Gain - ACTR3C ENSG00000260555;ENSG00000241449 intergenic Human other chr7:149736490 chr7:149736490 . . 0 21 hm5C_associated_SNPs_130736 0 0 0 0 0 chromatin 0 0.500231643921092 0.458898544311524 0.000463287842184856 hm5C_site_50794 DeepMRMD:0.458898544311524;iRNA_m5C:0.000463287842184856 50795 chr8 97307470 97307470 1 + T C STAD 97307470 + 97307450 97307490 41 GCTGGACAATCAGTATTACCTGGGAGCTGACTGAGGTAAGA GCTGGACAATCAGTATTACCCGGGAGCTGACTGAGGTAAGA Direct Gain 0 0.958483540326173 0 0.803829312324524 prediction 0.916967080652346 Functional Gain - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97307470 chr8:97307470 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130737 0 0 1 0 1 Ribosome 0 0.500232995861733 0.607658624649048 0.000465991723465953 hm5C_site_50795 DeepMRMD:0.607658624649048;iRNA_m5C:0.000465991723465953 50796 chr6 26022093 26022093 1 + T C CESC 26022093 + 26022073 26022113 41 GCGGGGTGCTCAAGGTGTTTTTGGAGAACGTGATCCGTGAC GCGGGGTGCTCAAGGTGTTTCTGGAGAACGTGATCCGTGAC Direct Gain 0 0.95847866772948 0 0.946724414825439 prediction 0.916957335458959 Functional Gain - HIST1H4A ENSG00000196176 CDS Human other chr6:26022093 chr6:26022093 synonymous SNV . 0 21 hm5C_associated_SNPs_130738 0 0 1 0 0 exosome 0 0.500231652825299 0.893448829650878 0.000463305650598045 hm5C_site_50796 DeepMRMD:0.893448829650878;iRNA_m5C:0.000463305650598045 50797 chr3 138348836 138348836 1 + T C rs141904805 138348836 + 138348816 138348856 41 GGAAACAGAAAGTGTGGGACTAGGAGCCGAAATCACTGGGT GGAAACAGAAAGTGTGGGACCAGGAGCCGAAATCACTGGGT Direct Gain 0 0.958469262735289 0 0.89223837852478 prediction 0.916938525470578 Functional Gain - FAIM ENSG00000158234 intronic Human protein_coding chr3:138348836 chr3:138348836 . . 0 21 hm5C_associated_SNPs_130739 0 0 0 2 0 Ribosome 0 0.500231643476279 0.78447675704956 0.000463286952557596 hm5C_site_50797 DeepMRMD:0.78447675704956;iRNA_m5C:0.000463286952557596 50798 chr19 42584118 42584118 1 + G C BLCA 42584118 + 42584098 42584138 41 CCCCTGAGCCCCCTGTGTCTGAGGAGACCTCAGCAGGGCCC CCCCTGAGCCCCCTGTGTCTCAGGAGACCTCAGCAGGGCCC Direct Gain 0 0.958453302216334 0 0.972729921340942 prediction 0.916906604432667 Functional Gain - ZNF574 ENSG00000105732 CDS Human protein_coding chr19:42584118 chr19:42584118 nonsynonymous SNV 0.399 0 21 hm5C_associated_SNPs_130740 0 0 1 0 0 Cytosol 0 0.500231643546465 0.945459842681884 0.000463287092930864 hm5C_site_50798 DeepMRMD:0.945459842681884;iRNA_m5C:0.000463287092930864 50799 chr4 3769266 3769266 1 + G C rs181208952 3769266 + 3769246 3769286 41 GGGCGGCGGCGAGCGGGCGCGGAGGGGGGCGCGGGCGGTGC GGGCGGCGGCGAGCGGGCGCCGAGGGGGGCGCGGGCGGTGC Direct Gain 0 0.958421311480378 0 0.869278907775879 prediction 0.916842622960757 Functional Gain - ADRA2C ENSG00000184160 CDS Human protein_coding chr4:3769266 chr4:3769266 synonymous SNV . 0 21 hm5C_associated_SNPs_130741 0 0 1 0 0 Ribosome 0 0.500231644148582 0.738557815551758 0.000463288297164022 hm5C_site_50799 DeepMRMD:0.738557815551758;iRNA_m5C:0.000463288297164022 50800 chr1 10510348 10510348 1 + T G rs556873478 10510348 - 10510328 10510368 41 GGCCGGTGGGGCCACCCTCCAGGGGCAGGGCAGCGGTGGCC GGCCGGTGGGGCCACCCTCCCGGGGCAGGGCAGCGGTGGCC Direct Gain 0 0.958408237239983 0 0.956449866294861 prediction 0.916816474479966 Functional Gain - CORT ENSG00000241563 CDS Human protein_coding chr1:10510348 chr1:10510348 nonsynonymous SNV 0.203 2 21 hm5C_associated_SNPs_130742 0 0 0 0 0 Cytosol 0 0.500231643921092 0.912899732589722 0.000463287842184856 hm5C_site_50800 DeepMRMD:0.912899732589722;iRNA_m5C:0.000463287842184856 50801 chr12 52306277 52306277 1 + A G PRAD 52306277 - 52306257 52306297 41 CAGCATCAGAAGGCCTTTCCTGGGGGAGCCCAAGGTCATGG CAGCATCAGAAGGCCTTTCCCGGGGGAGCCCAAGGTCATGG Direct Gain 0 0.958359653642964 0 0.948643088340759 prediction 0.916719307285927 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52306277 chr12:52306277 nonsynonymous SNV 0.046 1 21 hm5C_associated_SNPs_130743 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.897286176681518 0.000463287842184856 hm5C_site_50801 DeepMRMD:0.897286176681518;iRNA_m5C:0.000463287842184856 50802 chr14 99183903 99183903 1 + T C rs114525320 99183903 + 99183883 99183923 41 TGCAGTAATAGCAGAGAACCTGCGGAAGGAGAAGCTTCCCA TGCAGTAATAGCAGAGAACCCGCGGAAGGAGAAGCTTCCCA Direct Gain 0 0.958345899642841 0 0.761726558208466 prediction 0.916691799285682 Functional Gain - C14orf177 ENSG00000176605 UTR3 Human protein_coding chr14:99183903 chr14:99183903 . . 0 21 hm5C_associated_SNPs_130744 0 0 0 0 0 unknown 0 0.500231643921092 0.523453116416932 0.000463287842184856 hm5C_site_50802 DeepMRMD:0.523453116416932;iRNA_m5C:0.000463287842184856 50803 chr7 143632500 143632500 1 + A G GBM 143632500 - 143632480 143632520 41 GTTGGTGAGAAAGAAATACATGGGAGTGTGGAGTCGGCTGT GTTGGTGAGAAAGAAATACACGGGAGTGTGGAGTCGGCTGT Direct Gain 0 0.95828287748605 0 0.810808539390564 prediction 0.9165657549721 Functional Gain - OR2F2 ENSG00000221910 CDS Human protein_coding chr7:143632500 chr7:143632500 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130745 0 0 0 0 0 unknown 0 0.500231643921081 0.621617078781128 0.000463287842161542 hm5C_site_50803 DeepMRMD:0.621617078781128;iRNA_m5C:0.000463287842161542 50804 chr4 126372789 126372789 1 + A G READ 126372789 - 126372769 126372809 41 ATAAGTAAAGGGACCTTGATTTGGAGGGAGATCAGGGTCAG ATAAGTAAAGGGACCTTGATCTGGAGGGAGATCAGGGTCAG Direct Gain 0 0.958280466327251 0 0.881361961364746 prediction 0.916560932654502 Functional Gain - FAT4 ENSG00000196159 CDS Human protein_coding chr4:126372789 chr4:126372789 nonsynonymous SNV 0.991 3 21 hm5C_associated_SNPs_130746 0 0 0 0 0 Endoplasmic reticulum 0 0.500229544924932 0.762723922729492 0.000459089849863537 hm5C_site_50804 DeepMRMD:0.762723922729492;iRNA_m5C:0.000459089849863537 50805 chr17 39389124 39389124 1 + A G GBM 39389124 - 39389104 39389144 41 GGCAGCAGGGCTGGCAGCAGTTGGAGCCACAGCTCTGGTTT GGCAGCAGGGCTGGCAGCAGCTGGAGCCACAGCTCTGGTTT Direct Gain 0 0.958279242748314 0 0.937907338142395 prediction 0.916558485496628 Functional Gain - KRTAP9-3 ENSG00000204873 CDS Human protein_coding chr17:39389124 chr17:39389124 nonsynonymous SNV 0.026 0 21 hm5C_associated_SNPs_130747 0 0 0 0 0 unknown 0 0.500231643760554 0.87581467628479 0.000463287521107469 hm5C_site_50805 DeepMRMD:0.87581467628479;iRNA_m5C:0.000463287521107469 50806 chr2 233246399 233246399 1 + C G LUAD 233246399 - 233246379 233246419 41 CGGCGTCGGTGGTGCCGGCGGGGGGCGCCAGGTCGCAGGCG CGGCGTCGGTGGTGCCGGCGCGGGGCGCCAGGTCGCAGGCG Direct Gain 0 0.958276052456788 0 0.929280638694763 prediction 0.916552104913575 Functional Gain - ALPP ENSG00000163283 CDS Human protein_coding chr2:233246399 chr2:233246399 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_130748 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643920525 0.858561277389526 0.00046328784104932 hm5C_site_50806 DeepMRMD:0.858561277389526;iRNA_m5C:0.00046328784104932 50807 chr4 3317951 3317951 1 + A G rs113298998 3317951 - 3317931 3317971 41 ACCTCCACACTCCGCACCCTTGGGGGCGACGGCCCAGGCAA ACCTCCACACTCCGCACCCTCGGGGGCGACGGCCCAGGCAA Direct Gain 0 0.958266814317393 0 0.977384567260742 prediction 0.916533628634785 Functional Gain - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3317951 chr4:3317951 synonymous SNV . 0 21 hm5C_associated_SNPs_130749 0 0 0 0 0 Nucleus 0 0.500231643921093 0.954769134521484 0.000463287842185078 hm5C_site_50807 DeepMRMD:0.954769134521484;iRNA_m5C:0.000463287842185078 50808 chr7 102715814 102715814 1 + G C STAD 102715814 + 102715794 102715834 41 CAGGCTGACCCGGGGTCGGCGGCGGGGCGACCGCGAGCTCG CAGGCTGACCCGGGGTCGGCCGCGGGGCGACCGCGAGCTCG Direct Gain 0 0.958261046386965 0 0.861247420310974 prediction 0.91652209277393 Functional Gain - ARMC10 ENSG00000170632 CDS Human protein_coding chr7:102715814 chr7:102715814 nonsynonymous SNV 0.194 2 21 hm5C_associated_SNPs_130750 0 0 0 0 1 Ribosome 0 0.500233718808693 0.722494840621948 0.000467437617386768 hm5C_site_50808 DeepMRMD:0.722494840621948;iRNA_m5C:0.000467437617386768 50809 chr7 72413685 72413685 1 + C G LUSC 72413685 - 72413665 72413705 41 CCAAAGGCGGGCTGTGAGCTGGCGGGAGCGCCGAAGGCCGA CCAAAGGCGGGCTGTGAGCTCGCGGGAGCGCCGAAGGCCGA Direct Gain 0 0.958254300771649 0 0.744621396064758 prediction 0.916508601543297 Functional Gain - POM121 ENSG00000196313 CDS Human protein_coding chr7:72413685 chr7:72413685 synonymous SNV . 0 21 hm5C_associated_SNPs_130751 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.489242792129516 0.000463287842184856 hm5C_site_50809 DeepMRMD:0.489242792129516;iRNA_m5C:0.000463287842184856 50810 chr19 49376682 49376682 1 + T C UCEC 49376682 + 49376662 49376702 41 GCTGGCCTGGAGGGAGAAGCTAGGACTCCTCTGGCAATCCC GCTGGCCTGGAGGGAGAAGCCAGGACTCCTCTGGCAATCCC Direct Gain 0 0.958249715370085 0 0.797249972820282 prediction 0.91649943074017 Functional Gain - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49376682 chr19:49376682 synonymous SNV . 0 21 hm5C_associated_SNPs_130752 0 0 1 0 0 Cytosol 0 0.500231643921015 0.594499945640564 0.000463287842030313 hm5C_site_50810 DeepMRMD:0.594499945640564;iRNA_m5C:0.000463287842030313 50811 chr16 2818133 2818133 1 + C G BLCA 2818133 - 2818113 2818153 41 AGCTAGAGGACGACGACGACGAGGAGGAACTCCGCCGCTCC AGCTAGAGGACGACGACGACCAGGAGGAACTCCGCCGCTCC Direct Gain 0 0.958212452359734 0 0.955907583236694 prediction 0.916424904719469 Functional Gain - SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2818133 chr16:2818133 nonsynonymous SNV 0.030 0 21 hm5C_associated_SNPs_130753 0 0 0 0 0 Nucleus 0 0.500231643918213 0.911815166473388 0.000463287836425241 hm5C_site_50811 DeepMRMD:0.911815166473388;iRNA_m5C:0.000463287836425241 50812 chr5 149907779 149907779 1 + A G rs137903526 149907779 - 149907759 149907799 41 ACCAGGATGTAGCGGTCCAATGGCAGGGAGAGGCGCTTCCC ACCAGGATGTAGCGGTCCAACGGCAGGGAGAGGCGCTTCCC Direct Gain 0 0.958183793316625 0 0.887359023094177 prediction 0.916367586633251 Functional Gain - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149907779 chr5:149907779 synonymous SNV . 0 21 hm5C_associated_SNPs_130754 0 0 0 0 0 Cytosol 0 0.500231643919497 0.774718046188354 0.000463287838994075 hm5C_site_50812 DeepMRMD:0.774718046188354;iRNA_m5C:0.000463287838994075 50813 chr8 48676895 48676895 1 + A G rs181710161 48676895 - 48676875 48676915 41 GGCATCGGGTCCAGCCCGCTTGGGATCCAGCTCCCGGCCTG GGCATCGGGTCCAGCCCGCTCGGGATCCAGCTCCCGGCCTG Direct Gain 0 0.958167014423956 0 0.945937156677246 prediction 0.916334028847912 Functional Gain - CEBPD;PRKDC ENSG00000221869;ENSG00000253729 intergenic Human other chr8:48676895 chr8:48676895 . . 0 21 hm5C_associated_SNPs_130755 0 0 0 0 0 unknown 0 0.500231643921093 0.891874313354492 0.000463287842186633 hm5C_site_50813 DeepMRMD:0.891874313354492;iRNA_m5C:0.000463287842186633 50814 chr16 30409787 30409787 1 + C G OV 30409787 - 30409767 30409807 41 CAGCGGGGGGCTGGTGCCCAGAGGAGGTGGGGGTGGGCTGG CAGCGGGGGGCTGGTGCCCACAGGAGGTGGGGGTGGGCTGG Direct Gain 0 0.958165483629347 0 0.903872668743134 prediction 0.916330967258695 Functional Gain - ZNF48 ENSG00000180035 CDS Human protein_coding chr16:30409787 chr16:30409787 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_130756 0 0 0 0 0 Ribosome 0 0.500231643921089 0.807745337486268 0.000463287842177307 hm5C_site_50814 DeepMRMD:0.807745337486268;iRNA_m5C:0.000463287842177307 50815 chr8 56792490 56792490 1 + G C rs541271233 56792490 + 56792470 56792510 41 GCCTCCAGCCCGCGGCAAGCGGGGCGGCCGCGCCACCCCCG GCCTCCAGCCCGCGGCAAGCCGGGCGGCCGCGCCACCCCCG Direct Gain 0 0.958164892516925 0 0.82653534412384 prediction 0.91632978503385 Functional Gain - LYN ENSG00000254087 UTR5 Human protein_coding chr8:56792490 chr8:56792490 . . 0 21 hm5C_associated_SNPs_130757 0 0 1 0 0 Cytosol 0 0.500231643921092 0.65307068824768 0.000463287842184856 hm5C_site_50815 DeepMRMD:0.65307068824768;iRNA_m5C:0.000463287842184856 50816 chr14 59112645 59112645 1 + T C rs114859205 59112645 + 59112625 59112665 41 CGAAAGCAAGAGGGTGCCCCTGCCAGAGGGCTGCCCCTCAG CGAAAGCAAGAGGGTGCCCCCGCCAGAGGGCTGCCCCTCAG Direct Gain 0 0.958158562120353 0 0.888665676116943 prediction 0.916317124240705 Functional Gain - DACT1 ENSG00000165617 CDS Human protein_coding chr14:59112645 chr14:59112645 nonsynonymous SNV 0.024 0 21 hm5C_associated_SNPs_130758 0 0 0 0 0 exosome 0 0.500231643921181 0.777331352233886 0.00046328784236116 hm5C_site_50816 DeepMRMD:0.777331352233886;iRNA_m5C:0.00046328784236116 50817 chr9 131183103 131183103 1 + C G rs7849975 131183103 - 131183083 131183123 41 AGCTCTCGGGCCGGCCGAGGGGAGGGGGCGGGGCCTGGGGC AGCTCTCGGGCCGGCCGAGGCGAGGGGGCGGGGCCTGGGGC Direct Gain 0 0.958156146926163 0 0.95748770236969 prediction 0.916312293852326 Functional Gain - MIR1268A ENSG00000167123 UTR5 Human protein_coding chr9:131183103 chr9:131183103 . . 0 21 hm5C_associated_SNPs_130759 0 0 0 0 0 unknown 0 0.500231645874538 0.91497540473938 0.000463291749076555 hm5C_site_50817 DeepMRMD:0.91497540473938;iRNA_m5C:0.000463291749076555 50818 chrX 146993720 146993720 1 + T C COAD 146993720 + 146993700 146993740 41 GGAGGAGCTGGTGGTGGAAGTGCGGGGCTCCAATGGCGCTT GGAGGAGCTGGTGGTGGAAGCGCGGGGCTCCAATGGCGCTT Direct Gain 0 0.958156003948633 0 0.934695363044739 prediction 0.916312007897265 Functional Gain - FMR1 ENSG00000102081 CDS Human protein_coding chrX:146993720 chrX:146993720 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_130760 0 0 1 0 1 Cytosol 0 0.500231643921092 0.869390726089478 0.000463287842184856 hm5C_site_50818 DeepMRMD:0.869390726089478;iRNA_m5C:0.000463287842184856 50819 chr19 49132555 49132555 1 + C G BLCA 49132555 - 49132535 49132575 41 GGGTGGGAAGTGGGAGCCCAGAGGATGGGGGAATTACGGGG GGGTGGGAAGTGGGAGCCCACAGGATGGGGGAATTACGGGG Direct Gain 0 0.95813959359219 0 0.886225640773773 prediction 0.916279187184381 Functional Gain - SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49132555 chr19:49132555 nonsynonymous SNV 0.018 1 21 hm5C_associated_SNPs_130761 0 0 0 0 0 chromatin 0 0.500231643921092 0.772451281547546 0.000463287842184856 hm5C_site_50819 DeepMRMD:0.772451281547546;iRNA_m5C:0.000463287842184856 50820 chr19 1912867 1912867 1 + A G CESC 1912867 - 1912847 1912887 41 CGGCGCCTGCGCGGACGGCCTGGGGGGCAGCGGCCGGGGCG CGGCGCCTGCGCGGACGGCCCGGGGGGCAGCGGCCGGGGCG Direct Gain 0 0.958111054921951 0 0.959482669830322 prediction 0.916222109843902 Functional Gain - ADAT3 ENSG00000213638 CDS Human protein_coding chr19:1912867 chr19:1912867 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_130762 0 0 0 0 0 exosome 0 0.500231643921085 0.918965339660644 0.000463287842170645 hm5C_site_50820 DeepMRMD:0.918965339660644;iRNA_m5C:0.000463287842170645 50821 chr16 88873546 88873546 1 + C G BLCA 88873546 - 88873526 88873566 41 GGCTGCAGGCGGGGTGGCTGGTGGGGTAGCCGGCAGTGCTG GGCTGCAGGCGGGGTGGCTGCTGGGGTAGCCGGCAGTGCTG Direct Gain 0 0.958093842107553 0 0.808325052261353 prediction 0.916187684215105 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88873546 chr16:88873546 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_130763 0 0 0 0 0 Cytosol 0 0.500231643945804 0.616650104522706 0.000463287891608655 hm5C_site_50821 DeepMRMD:0.616650104522706;iRNA_m5C:0.000463287891608655 50822 chr7 100086033 100086033 1 + G C LIHC 100086033 + 100086013 100086053 41 CTTTAGGGGAGGAGGACGAAGTGGAGGAGGCCTGGCTGGGC CTTTAGGGGAGGAGGACGAACTGGAGGAGGCCTGGCTGGGC Direct Gain 0 0.958087332603009 0 0.807598233222961 prediction 0.916174665206019 Functional Gain - NYAP1 ENSG00000166924 CDS Human protein_coding chr7:100086033 chr7:100086033 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_130764 0 0 0 0 0 nucleolus 0 0.500231643921313 0.615196466445922 0.000463287842626947 hm5C_site_50822 DeepMRMD:0.615196466445922;iRNA_m5C:0.000463287842626947 50823 chr13 58207164 58207164 1 + G C LUSC 58207164 + 58207144 58207184 41 GCGCACATGACCCCGACGCCGGCGAGAATGGGCTCCGCACC GCGCACATGACCCCGACGCCCGCGAGAATGGGCTCCGCACC Direct Gain 0 0.958075702678344 0 0.865085363388062 prediction 0.916151405356688 Functional Gain - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58207164 chr13:58207164 nonsynonymous SNV 0.786 4 21 hm5C_associated_SNPs_130765 0 0 0 0 0 exosome 0 0.50024449857836 0.730170726776124 0.000488997156719018 hm5C_site_50823 DeepMRMD:0.730170726776124;iRNA_m5C:0.000488997156719018 50824 chr17 40962888 40962888 1 + T C rs375451969 40962888 + 40962868 40962908 41 AGAGTTAAACTGGGTTTTGATGGAATAGGAGCCGCCACTGC AGAGTTAAACTGGGTTTTGACGGAATAGGAGCCGCCACTGC Direct Gain 0 0.958060011902206 0 0.755622863769531 prediction 0.916120023804412 Functional Gain - BECN1 ENSG00000126581 CDS Human protein_coding chr17:40962888 chr17:40962888 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130766 0 0 0 0 0 Ribosome 0 0.500231643921093 0.511245727539062 0.000463287842185078 hm5C_site_50824 DeepMRMD:0.511245727539062;iRNA_m5C:0.000463287842185078 50825 chr7 75933310 75933310 1 + C G rs7805625 75933310 - 75933290 75933330 41 ACTTGGGTGGGGTCCACACCGGGGGGCAGCCTGGACGTGCA ACTTGGGTGGGGTCCACACCCGGGGGCAGCCTGGACGTGCA Direct Gain 0 0.958054223638288 0 0.941832184791565 prediction 0.916108447276575 Functional Gain - HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933310 chr7:75933310 synonymous SNV . 0 21 hm5C_associated_SNPs_130767 0 0 0 0 0 Cytosol 0 0.500231921187407 0.88366436958313 0.000463842374813339 hm5C_site_50825 DeepMRMD:0.88366436958313;iRNA_m5C:0.000463842374813339 50826 chr16 70506938 70506938 1 + A G UCEC 70506938 - 70506918 70506958 41 CACAGGAAAGAGGCGGGCGCTGGGAAGGCAGTACTCTGCGG CACAGGAAAGAGGCGGGCGCCGGGAAGGCAGTACTCTGCGG Direct Gain 0 0.958042632685885 0 0.874597549438477 prediction 0.91608526537177 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70506938 chr16:70506938 nonsynonymous SNV 0.091 0 21 hm5C_associated_SNPs_130768 0 0 0 0 0 chromatin 0 0.500231643921092 0.749195098876954 0.000463287842184856 hm5C_site_50826 DeepMRMD:0.749195098876954;iRNA_m5C:0.000463287842184856 50827 chr11 67071584 67071584 1 + C G rs4244822 67071584 - 67071564 67071604 41 GCTGGACCGCCTGGTCCTGCGGAGAGAGCAGCCCCAGGGCA GCTGGACCGCCTGGTCCTGCCGAGAGAGCAGCCCCAGGGCA Direct Gain 0 0.957953449376716 0 0.910730302333832 prediction 0.915906898753432 Functional Gain - SSH3 ENSG00000172830 UTR3 Human protein_coding chr11:67071584 chr11:67071584 . . 0 21 hm5C_associated_SNPs_130769 0 0 0 0 0 nucleus 0 0.500231643921093 0.821460604667664 0.000463287842185078 hm5C_site_50827 DeepMRMD:0.821460604667664;iRNA_m5C:0.000463287842185078 50828 chr16 85691111 85691111 1 + A G UCEC 85691111 - 85691091 85691131 41 GCTGCCGGAACTCGGACACCTGAGACTGCCGGTCCTCCTTC GCTGCCGGAACTCGGACACCCGAGACTGCCGGTCCTCCTTC Direct Gain 0 0.957946347434526 0 0.89622700214386 prediction 0.915892694869052 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691111 chr16:85691111 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_130770 0 0 0 0 0 Cytosol 0 0.500231643921086 0.79245400428772 0.000463287842171978 hm5C_site_50828 DeepMRMD:0.79245400428772;iRNA_m5C:0.000463287842171978 50829 chr16 1560166 1560166 1 + T C rs2745110 1560166 + 1560146 1560186 41 GGGACATGGCAGCCTGGACGTGGGGCTGGGGCTGTGGGCGC GGGACATGGCAGCCTGGACGCGGGGCTGGGGCTGTGGGCGC Direct Gain 0 0.957917784216274 0 0.889365434646606 prediction 0.915835568432549 Functional Gain - TELO2 ENSG00000100726 UTR3 Human protein_coding chr16:1560166 chr16:1560166 . . 0 21 hm5C_associated_SNPs_130771 0 0 1 0 0 Cytosol 0 0.500231643920172 0.778730869293212 0.000463287840343218 hm5C_site_50829 DeepMRMD:0.778730869293212;iRNA_m5C:0.000463287840343218 50830 chr8 27516302 27516302 1 + T G rs28367191 27516302 - 27516282 27516322 41 TCCTGGGTGAGGTCCTTCAGAGAGAGGTCCAGGCCAGCTGT TCCTGGGTGAGGTCCTTCAGCGAGAGGTCCAGGCCAGCTGT Direct Gain 0 0.95789913720822 0 0.886472463607788 prediction 0.915798274416439 Functional Gain - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27516302 chr8:27516302 synonymous SNV . 0 21 hm5C_associated_SNPs_130772 0 0 0 0 0 Cytosol 0 0.500231643863546 0.772944927215576 0.000463287727091144 hm5C_site_50830 DeepMRMD:0.772944927215576;iRNA_m5C:0.000463287727091144 50831 chr2 191231453 191231453 1 + G C BLCA 191231453 + 191231433 191231473 41 CCTTGAGGTTGTGTTCAACAGAGGAGGAAACAGCAGAGCTT CCTTGAGGTTGTGTTCAACACAGGAGGAAACAGCAGAGCTT Direct Gain 0 0.957894585097891 0 0.714413523674011 prediction 0.915789170195781 Functional Gain - INPP1 ENSG00000151689 CDS Human protein_coding chr2:191231453 chr2:191231453 nonsynonymous SNV 0.932 1 21 hm5C_associated_SNPs_130773 0 0 1 0 1 exosome 0 0.500231643921091 0.428827047348022 0.00046328784218197 hm5C_site_50831 DeepMRMD:0.428827047348022;iRNA_m5C:0.00046328784218197 50832 chr19 3208397 3208397 1 + C G rs556384682 3208397 - 3208377 3208417 41 TTTGCAGTGGGTCGGGGGTCGGGGAGGCAGGGGCCCTGCCA TTTGCAGTGGGTCGGGGGTCCGGGAGGCAGGGGCCCTGCCA Direct Gain 0 0.957872595637537 0 0.956804037094116 prediction 0.915745191275074 Functional Gain - NCLN ENSG00000125912 UTR3 Human protein_coding chr19:3208397 chr19:3208397 . . 0 21 hm5C_associated_SNPs_130774 0 0 0 0 0 Ribosome 0 0.500231643927497 0.913608074188232 0.00046328785499461 hm5C_site_50832 DeepMRMD:0.913608074188232;iRNA_m5C:0.00046328785499461 50833 chr8 86089708 86089708 1 + G C rs4150841 86089708 + 86089688 86089728 41 GCAGGCGCCGGCAGGGCAGGGGCAGGGCCAGCGGCCGCCGC GCAGGCGCCGGCAGGGCAGGCGCAGGGCCAGCGGCCGCCGC Direct Gain 0 0.957871094350728 0 0.712374329566956 prediction 0.915742188701457 Functional Gain - E2F5 ENSG00000133740 CDS Human protein_coding chr8:86089708 chr8:86089708 nonsynonymous SNV 0.110 0 21 hm5C_associated_SNPs_130775 0 0 1 0 0 Cytosol 0 0.500231643921092 0.424748659133912 0.000463287842184856 hm5C_site_50833 DeepMRMD:0.424748659133912;iRNA_m5C:0.000463287842184856 50834 chr4 140375467 140375467 1 + G C PRAD 140375467 + 140375447 140375487 41 TCTTCAAGATAATCGTGATCGGCGACTCCAATGTGGGCAAG TCTTCAAGATAATCGTGATCCGCGACTCCAATGTGGGCAAG Direct Gain 0 0.957841595266529 0 0.186826556921005 prediction 0.915683190533057 Functional Gain - RAB33B ENSG00000172007 CDS Human protein_coding chr4:140375467 chr4:140375467 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_130776 0 0 1 0 0 Nucleus 0 0.500231643921998 0 0.000463287843995408 hm5C_site_50834 DeepMRMD:0;iRNA_m5C:0.000463287843995408 50835 chr10 6245130 6245130 1 + C G rs548865023 6245130 - 6245110 6245150 41 CCCGGAACAAAGGAGGAGAGGGGGGCGTGCGCCGGCGCGCG CCCGGAACAAAGGAGGAGAGCGGGGCGTGCGCCGGCGCGCG Direct Gain 0 0.957817990604984 0 0.946609377861023 prediction 0.915635981209969 Functional Gain - PFKFB3 ENSG00000170525 UTR5 Human protein_coding chr10:6245130 chr10:6245130 . . 0 21 hm5C_associated_SNPs_130777 0 0 0 0 0 Ribosome 0 0.500231643921092 0.893218755722046 0.000463287842184856 hm5C_site_50835 DeepMRMD:0.893218755722046;iRNA_m5C:0.000463287842184856 50836 chr6 26377096 26377096 1 + T C rs373770692 26377096 + 26377076 26377116 41 TGGACTATGGGCCTGACTGATGGGAATAAGTATCGGGCTCT TGGACTATGGGCCTGACTGACGGGAATAAGTATCGGGCTCT Direct Gain 0 0.957778179635792 0 0.752979040145874 prediction 0.915556359271583 Functional Gain - BTN3A2 ENSG00000186470 UTR3 Human protein_coding chr6:26377096 chr6:26377096 . . 0 21 hm5C_associated_SNPs_130778 0 0 0 0 0 Ribosome 0 0.500231643921092 0.505958080291748 0.000463287842184856 hm5C_site_50836 DeepMRMD:0.505958080291748;iRNA_m5C:0.000463287842184856 50837 chr2 236817444 236817444 1 + A G rs145394669 236817444 - 236817424 236817464 41 GCTCGGGGTGGCCTCTTCCCTGGGACTTTCACAGTGGTTCT GCTCGGGGTGGCCTCTTCCCCGGGACTTTCACAGTGGTTCT Direct Gain 0 0.957772904901838 0 0.853539347648621 prediction 0.915545809803677 Functional Gain - AGAP1 ENSG00000157985 CDS Human protein_coding chr2:236817444 chr2:236817444 synonymous SNV . 0 21 hm5C_associated_SNPs_130779 0 0 0 0 0 Nucleus 0 0.500231643921092 0.707078695297242 0.000463287842184856 hm5C_site_50837 DeepMRMD:0.707078695297242;iRNA_m5C:0.000463287842184856 50838 chr9 129458781 129458781 1 + A G rs10121481 129458781 - 129458761 129458801 41 GCCAGGCTGGCCGCAGAGGCTGGCAGTCCCCCCCAGGCCCC GCCAGGCTGGCCGCAGAGGCCGGCAGTCCCCCCCAGGCCCC Direct Gain 0 0.957768384364595 0 0.684929728507996 prediction 0.91553676872919 Functional Gain - LMX1B ENSG00000136944 UTR3 Human protein_coding chr9:129458781 chr9:129458781 . . 0 21 hm5C_associated_SNPs_130780 1 0 0 0 0 Endoplasmic reticulum 0 0.500231643922546 0.369859457015992 0.000463287845091642 hm5C_site_50838 DeepMRMD:0.369859457015992;iRNA_m5C:0.000463287845091642 Nail-patella syndrome Nail-patella syndrome 50839 chr12 130647776 130647776 1 + G C LUAD 130647776 + 130647756 130647796 41 TGTACGCGCCGATGTGCACCGAGCAGGTCTCTACCCCCATC TGTACGCGCCGATGTGCACCCAGCAGGTCTCTACCCCCATC Direct Gain 0 0.957749558865284 0 0.539501845836639 prediction 0.915499117730568 Functional Gain - FZD10 ENSG00000111432 CDS Human protein_coding chr12:130647776 chr12:130647776 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130781 0 0 0 0 0 exosome 0 0.500231643921092 0.0790036916732779 0.000463287842184856 hm5C_site_50839 DeepMRMD:0.0790036916732779;iRNA_m5C:0.000463287842184856 50840 chr17 40839888 40839888 1 + C G OV 40839888 - 40839868 40839908 41 GTCCCCCAGACGGGAGAAAAGGAGAAGCCCGGTGAGGTCCC GTCCCCCAGACGGGAGAAAACGAGAAGCCCGGTGAGGTCCC Direct Gain 0 0.957748098692394 0 0.726272761821747 prediction 0.915496197384788 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40839888 chr17:40839888 nonsynonymous SNV 0.952 2 21 hm5C_associated_SNPs_130782 0 0 0 0 0 Cytosol 0 0.500231643921092 0.452545523643494 0.000463287842184856 hm5C_site_50840 DeepMRMD:0.452545523643494;iRNA_m5C:0.000463287842184856 50841 chr16 4387924 4387924 1 + T G rs189481658 4387924 - 4387904 4387944 41 AGGGGGAGCCTGGTGCTAGCAGGGAGGGCAGATGCCACCCC AGGGGGAGCCTGGTGCTAGCCGGGAGGGCAGATGCCACCCC Direct Gain 0 0.9577177053999 0 0.962738335132599 prediction 0.9154354107998 Functional Gain - GLIS2 ENSG00000126603 UTR3 Human protein_coding chr16:4387924 chr16:4387924 . . 0 21 hm5C_associated_SNPs_130783 1 0 1 0 0 Endoplasmic reticulum 0 0.500231643921092 0.925476670265198 0.000463287842184856 hm5C_site_50841 DeepMRMD:0.925476670265198;iRNA_m5C:0.000463287842184856 Nephronophthisis Nephronophthisis 50842 chr20 48569163 48569163 1 + T C rs564138097 48569163 + 48569143 48569183 41 CTGAAGCTCCCGCTGGGCTGTGGGGTTGCCAGAAGCTGGGG CTGAAGCTCCCGCTGGGCTGCGGGGTTGCCAGAAGCTGGGG Direct Gain 0 0.957707735376761 0 0.851065397262573 prediction 0.915415470753521 Functional Gain - RNF114 ENSG00000124226 UTR3 Human protein_coding chr20:48569163 chr20:48569163 . . 0 21 hm5C_associated_SNPs_130784 0 0 1 0 0 Ribosome 0 0.500231643921093 0.702130794525146 0.000463287842185522 hm5C_site_50842 DeepMRMD:0.702130794525146;iRNA_m5C:0.000463287842185522 50843 chr17 40947334 40947334 1 + T G UCEC 40947334 - 40947314 40947354 41 CCAGGAGCAACGGGAGGGGGAAGGGGCAGGCTAGGGAGGGG CCAGGAGCAACGGGAGGGGGCAGGGGCAGGCTAGGGAGGGG Direct Gain 0 0.95769837923922 0 0.815137684345245 prediction 0.91539675847844 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40947334 chr17:40947334 synonymous SNV . 0 21 hm5C_associated_SNPs_130785 0 0 1 0 0 chromatin 0 0.500231643921092 0.63027536869049 0.000463287842184856 hm5C_site_50843 DeepMRMD:0.63027536869049;iRNA_m5C:0.000463287842184856 50844 chr19 15726480 15726480 1 + C G rs141696823 15726480 - 15726460 15726500 41 CCACCAGCAGGAGCAGCCACGGGGATGCTGCCACCGGCCTG CCACCAGCAGGAGCAGCCACCGGGATGCTGCCACCGGCCTG Direct Gain 0 0.95763428760711 0 0.949756920337677 prediction 0.915268575214221 Functional Gain - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15726480 chr19:15726480 . 0.002 2 21 hm5C_associated_SNPs_130786 0 0 0 0 0 unknown 0 0.500231643921092 0.899513840675354 0.000463287842184856 hm5C_site_50844 DeepMRMD:0.899513840675354;iRNA_m5C:0.000463287842184856 50845 chr15 92937240 92937240 1 + C G rs188927412 92937240 - 92937220 92937260 41 GGCGCGAGGAGCAGGGGCCGGAGGGCGCAGCGGCGGACGCC GGCGCGAGGAGCAGGGGCCGCAGGGCGCAGCGGCGGACGCC Direct Gain 0 0.957607329850785 0 0.965152859687805 prediction 0.915214659701571 Functional Gain - ST8SIA2 ENSG00000140557 UTR5 Human protein_coding chr15:92937240 chr15:92937240 . . 0 21 hm5C_associated_SNPs_130787 0 0 0 0 0 Nucleus 0 0.500231643917765 0.93030571937561 0.000463287835530624 hm5C_site_50845 DeepMRMD:0.93030571937561;iRNA_m5C:0.000463287835530624 50846 chr8 65494174 65494174 1 + C G BLCA 65494174 - 65494154 65494194 41 TCTTGGAGAGCTTTCGCACCGAGGGGCTGTGCGCGTAGGGG TCTTGGAGAGCTTTCGCACCCAGGGGCTGTGCGCGTAGGGG Direct Gain 0 0.957562533232643 0 0.925652742385864 prediction 0.915125066465286 Functional Gain - BHLHE22 ENSG00000180828 CDS Human protein_coding chr8:65494174 chr8:65494174 nonsynonymous SNV 0.975 4 21 hm5C_associated_SNPs_130788 0 0 0 0 0 exosome 0 0.500231643921092 0.851305484771728 0.000463287842183968 hm5C_site_50846 DeepMRMD:0.851305484771728;iRNA_m5C:0.000463287842183968 50847 chr2 74128448 74128448 1 + G C CESC 74128448 + 74128428 74128468 41 CCACACACACCATGTGTGAAGAGGAGACCACCGCGCTCGTG CCACACACACCATGTGTGAACAGGAGACCACCGCGCTCGTG Direct Gain 0 0.957549984264673 0 0.706351399421692 prediction 0.915099968529346 Functional Gain - ACTG2 ENSG00000163017 CDS Human protein_coding chr2:74128448 chr2:74128448 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130789 0 0 0 0 1 Cytosol 0 0.500231459237351 0.412702798843384 0.0004629184747027 hm5C_site_50847 DeepMRMD:0.412702798843384;iRNA_m5C:0.0004629184747027 50848 chr7 100485673 100485673 1 + A G COAD 100485673 - 100485653 100485693 41 GGGAGTCCTGGGGTCAAACCTGGGGGGAGTACAACACGGAC GGGAGTCCTGGGGTCAAACCCGGGGGGAGTACAACACGGAC Direct Gain 0 0.957548078854897 0 0.927037000656128 prediction 0.915096157709793 Functional Gain - SRRT;SRRT ENSG00000087087;ENSG00000087087 exonic;splicing Human other chr7:100485673 chr7:100485673 synonymous SNV 1.000 0 21 hm5C_associated_SNPs_130790 0 0 0 0 0 unknown 0 0.500231643921092 0.854074001312256 0.000463287842184856 hm5C_site_50848 DeepMRMD:0.854074001312256;iRNA_m5C:0.000463287842184856 50849 chr4 949228 949228 1 + C G LUSC 949228 - 949208 949248 41 CCGGTGACCTTGCTGACATAGGGGAGGAGGATGACAGTCAC CCGGTGACCTTGCTGACATACGGGAGGAGGATGACAGTCAC Direct Gain 0 0.957542992958437 0 0.919845223426819 prediction 0.915085985916874 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:949228 chr4:949228 synonymous SNV . 0 21 hm5C_associated_SNPs_130791 0 0 0 0 0 chromatin 0 0.500231651314018 0.839690446853638 0.000463302628035178 hm5C_site_50849 DeepMRMD:0.839690446853638;iRNA_m5C:0.000463302628035178 50850 chr1 155403039 155403039 1 + G C rs28516425 155403039 + 155403019 155403059 41 CGGTGGAGGTGATGGGCCAGGGGGGCCGGAGCCGGGCTGGG CGGTGGAGGTGATGGGCCAGCGGGGCCGGAGCCGGGCTGGG Direct Gain 0 0.957533333129833 0 0.928916156291962 prediction 0.915066666259666 Functional Gain - POU5F1P4 ENSG00000237872 ncRNA_exonic Human processed_pseudogene chr1:155403039 chr1:155403039 . . 0 21 hm5C_associated_SNPs_130792 0 0 0 0 0 unknown 0 0.500231643921092 0.857832312583924 0.000463287842184856 hm5C_site_50850 DeepMRMD:0.857832312583924;iRNA_m5C:0.000463287842184856 50851 chr1 15813836 15813836 1 + T C rs61742388 15813836 + 15813816 15813856 41 GACGGCCGGTGGGAGGTGCATGGCATCGGCAGCCTCACGTC GACGGCCGGTGGGAGGTGCACGGCATCGGCAGCCTCACGTC Direct Gain 0 0.957528912855544 0 0.684167385101318 prediction 0.915057825711088 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15813836 chr1:15813836 synonymous SNV . 0 21 hm5C_associated_SNPs_130793 0 0 0 0 2 unknown 0 0.500231663967909 0.368334770202636 0.000463327935818603 hm5C_site_50851 DeepMRMD:0.368334770202636;iRNA_m5C:0.000463327935818603 50852 chr9 126118574 126118574 1 + A G COAD 126118574 - 126118554 126118594 41 GCAGGACAGAGGCCAGGGCCTGGGGGTCCGGGGTCCCAGGC GCAGGACAGAGGCCAGGGCCCGGGGGTCCGGGGTCCCAGGC Direct Gain 0 0.957525974282638 0 0.97233259677887 prediction 0.915051948565276 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126118574 chr9:126118574 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_130794 0 0 0 0 0 exosome 0 0.500231643921092 0.94466519355774 0.000463287842184856 hm5C_site_50852 DeepMRMD:0.94466519355774;iRNA_m5C:0.000463287842184856 50853 chr20 327757 327757 1 + C G rs577381988 327757 - 327737 327777 41 TGCTGTCTCCGCCGAGCAAAGGCGGGTCCGGTTCGCGCCTG TGCTGTCTCCGCCGAGCAAACGCGGGTCCGGTTCGCGCCTG Direct Gain 0 0.957517438406226 0 0.85633510351181 prediction 0.915034876812453 Functional Gain - NRSN2 ENSG00000225377 ncRNA_intronic Human antisense chr20:327757 chr20:327757 . . 0 21 hm5C_associated_SNPs_130795 0 0 0 0 0 cytosol 0 0.500231643920006 0.71267020702362 0.000463287840012816 hm5C_site_50853 DeepMRMD:0.71267020702362;iRNA_m5C:0.000463287840012816 50854 chr15 40564435 40564435 1 + C G CESC 40564435 - 40564415 40564455 41 CTTTCTGCGGCGGTCGGAAAGAGGAGTTGGGCTGCAGGGAC CTTTCTGCGGCGGTCGGAAACAGGAGTTGGGCTGCAGGGAC Direct Gain 0 0.957486358793347 0 0.905510783195496 prediction 0.914972717586694 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40564435 chr15:40564435 nonsynonymous SNV 0.417 0 21 hm5C_associated_SNPs_130796 0 0 0 0 0 unknown 0 0.500231643922408 0.811021566390992 0.000463287844815197 hm5C_site_50854 DeepMRMD:0.811021566390992;iRNA_m5C:0.000463287844815197 50855 chr19 54410819 54410819 1 + T C rs186000310 54410819 + 54410799 54410839 41 CCCCAGTGCCTGCCACTCTCTGGGACTCTCCTCCTCCCCTC CCCCAGTGCCTGCCACTCTCCGGGACTCTCCTCCTCCCCTC Direct Gain 0 0.957486011335994 0 0.928363800048828 prediction 0.914972022671987 Functional Gain - PRKCG ENSG00000126583 UTR3 Human protein_coding chr19:54410819 chr19:54410819 . . 0 21 hm5C_associated_SNPs_130797 1 0 0 0 0 Cytosol 0 0.500231660911694 0.856727600097656 0.000463321823388263 hm5C_site_50855 DeepMRMD:0.856727600097656;iRNA_m5C:0.000463321823388263 Spinocerebellar Ataxia, Dominant Spinocerebellar Ataxia, Dominant 50856 chr10 27793366 27793366 1 + G C LIHC 27793366 + 27793346 27793386 41 GAGTGGGGTGGGCAAGTCCAGGTGAGGCGGAGGTGCGGGTC GAGTGGGGTGGGCAAGTCCACGTGAGGCGGAGGTGCGGGTC Direct Gain 0 0.957466049290801 0 0.557161808013916 prediction 0.914932098581603 Functional Gain - RAB18 ENSG00000099246 CDS Human protein_coding chr10:27793366 chr10:27793366 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_130798 0 0 1 0 1 Cytosol 0 0.500231643952152 0.114323616027832 0.000463287904303833 hm5C_site_50856 DeepMRMD:0.114323616027832;iRNA_m5C:0.000463287904303833 50857 chr17 61556429 61556429 1 + A G rs117134739 61556429 - 61556409 61556449 41 ACCAGCAGGTGGCAGTCTTGTTGGGGAGGCAGACCTTGGCG ACCAGCAGGTGGCAGTCTTGCTGGGGAGGCAGACCTTGGCG Direct Gain 0 0.957448193785779 0 0.912459492683411 prediction 0.914896387571559 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61556429 chr17:61556429 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_130799 0 0 0 0 0 cytosol 0 0.500231649801557 0.824918985366822 0.000463299603114642 hm5C_site_50857 DeepMRMD:0.824918985366822;iRNA_m5C:0.000463299603114642 50858 chr6 158617270 158617270 1 + T C rs549660746 158617270 + 158617250 158617290 41 GTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCGGG GTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCGGG Direct Gain 0 0.957444760200023 0 0.728227734565735 prediction 0.914889520400046 Functional Gain - GTF2H5 ENSG00000272047 UTR3 Human protein_coding chr6:158617270 chr6:158617270 . . 0 21 hm5C_associated_SNPs_130800 0 0 0 0 0 Cytosol 0 0.500231408413134 0.45645546913147 0.000462816826267476 hm5C_site_50858 DeepMRMD:0.45645546913147;iRNA_m5C:0.000462816826267476 50859 chr1 248059216 248059216 1 + G C HNSC 248059216 + 248059196 248059236 41 TGTTCCTGGGTCTGGGTGGTGTGGAGTGCCTGCTTCTGGCT TGTTCCTGGGTCTGGGTGGTCTGGAGTGCCTGCTTCTGGCT Direct Gain 0 0.957393718863766 0 0.71773236989975 prediction 0.914787437727531 Functional Gain - OR2W3 ENSG00000238243 CDS Human protein_coding chr1:248059216 chr1:248059216 nonsynonymous SNV 0.968 1 21 hm5C_associated_SNPs_130801 0 0 1 0 0 exosome 0 0.500231648810227 0.4354647397995 0.000463297620454828 hm5C_site_50859 DeepMRMD:0.4354647397995;iRNA_m5C:0.000463297620454828 50860 chr4 77676200 77676200 1 + A G UCEC 77676200 - 77676180 77676220 41 TGGGGGAAGAGGTTCAAATGTGGGGCTGGACGTGGCCTTGG TGGGGGAAGAGGTTCAAATGCGGGGCTGGACGTGGCCTTGG Direct Gain 0 0.957391999449416 0 0.883224248886108 prediction 0.914783998898833 Functional Gain - SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77676200 chr4:77676200 nonsynonymous SNV 0.169 0 21 hm5C_associated_SNPs_130802 0 0 0 0 0 Ribosome 0 0.500231643921092 0.766448497772216 0.000463287842184856 hm5C_site_50860 DeepMRMD:0.766448497772216;iRNA_m5C:0.000463287842184856 50861 chr6 31594921 31594921 1 + A G STAD 31594921 - 31594901 31594941 41 GGGCCCCGGTGAGGTGGGGGTAGGGGAGGCTTTGGGGCAGG GGGCCCCGGTGAGGTGGGGGCAGGGGAGGCTTTGGGGCAGG Direct Gain 0 0.957381787101054 0 0.884341835975647 prediction 0.914763574202109 Functional Gain - PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31594921 chr6:31594921 synonymous SNV . 0 21 hm5C_associated_SNPs_130803 0 0 0 0 0 Ribosome 0 0.500231400760901 0.768683671951294 0.000462801521802225 hm5C_site_50861 DeepMRMD:0.768683671951294;iRNA_m5C:0.000462801521802225 50862 chr12 53495842 53495842 1 + A G COAD 53495842 - 53495822 53495862 41 AGGGACCTCGGCGCTGCCCCTGGGAGGAGCGGCACTGGAGA AGGGACCTCGGCGCTGCCCCCGGGAGGAGCGGCACTGGAGA Direct Gain 0 0.9573618640912 0 0.963117480278015 prediction 0.9147237281824 Functional Gain - IGFBP6 ENSG00000167779 CDS Human protein_coding chr12:53495842 chr12:53495842 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_130804 0 0 0 0 0 nucleus 0 0.500231643921287 0.92623496055603 0.000463287842574989 hm5C_site_50862 DeepMRMD:0.92623496055603;iRNA_m5C:0.000463287842574989 50863 chr12 48175791 48175791 1 + T C rs4760653 48175791 + 48175771 48175811 41 ACCCGAGAGGCCAGGCCAGATGGGAAAGGGATTAGCGCCTC ACCCGAGAGGCCAGGCCAGACGGGAAAGGGATTAGCGCCTC Direct Gain 0 0.957356290872037 0 0.648312032222748 prediction 0.914712581744073 Functional Gain - SLC48A1 ENSG00000211584 UTR3 Human protein_coding chr12:48175791 chr12:48175791 . . 0 21 hm5C_associated_SNPs_130805 0 0 0 0 0 Ribosome 0 0.500231643921387 0.296624064445496 0.000463287842773497 hm5C_site_50863 DeepMRMD:0.296624064445496;iRNA_m5C:0.000463287842773497 50864 chr12 55759063 55759063 1 + A G COAD 55759063 - 55759043 55759083 41 GTTCCGAAGGAAGAAATACATGGGAGTCTGCAGATGGGGAT GTTCCGAAGGAAGAAATACACGGGAGTCTGCAGATGGGGAT Direct Gain 0 0.957352761850159 0 0.728465259075165 prediction 0.914705523700318 Functional Gain - OR6C75 ENSG00000187857 CDS Human protein_coding chr12:55759063 chr12:55759063 nonsynonymous SNV 0.831 2 21 hm5C_associated_SNPs_130806 0 0 0 0 0 unknown 0 0.500231643921092 0.45693051815033 0.000463287842184856 hm5C_site_50864 DeepMRMD:0.45693051815033;iRNA_m5C:0.000463287842184856 50865 chr9 131085113 131085113 1 + C G rs144235048 131085113 - 131085093 131085133 41 GCGGGCGTCCGCGGAGGATGGGCGGGTACGAAGAACGCCGC GCGGGCGTCCGCGGAGGATGCGCGGGTACGAAGAACGCCGC Direct Gain 0 0.957348318280847 0 0.731609880924225 prediction 0.914696636561695 Functional Gain - COQ4 ENSG00000167113 UTR5 Human protein_coding chr9:131085113 chr9:131085113 . . 0 21 hm5C_associated_SNPs_130807 0 0 0 0 0 Ribosome 0 0.500231643921092 0.46321976184845 0.000463287842184856 hm5C_site_50865 DeepMRMD:0.46321976184845;iRNA_m5C:0.000463287842184856 50866 chr1 27124087 27124087 1 + A G STAD 27124087 - 27124067 27124107 41 AGCTGGAAACCAGTACATAATAGGAGTGGAGGAGCCCAAAA AGCTGGAAACCAGTACATAACAGGAGTGGAGGAGCCCAAAA Direct Gain 0 0.957344917485432 0 0.862910509109497 prediction 0.914689834970865 Functional Gain - PIGV ENSG00000060642 CDS Human protein_coding chr1:27124087 chr1:27124087 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_130808 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921369 0.725821018218994 0.000463287842737303 hm5C_site_50866 DeepMRMD:0.725821018218994;iRNA_m5C:0.000463287842737303 50867 chr19 48953673 48953673 1 + A G SKCM 48953673 - 48953653 48953693 41 GGAGGAAGGCTGCCAGGGCCTGGGGCTCCTCCACCACCTGC GGAGGAAGGCTGCCAGGGCCCGGGGCTCCTCCACCACCTGC Direct Gain 0 0.957338081802644 0 0.850960969924927 prediction 0.914676163605287 Functional Gain - GRWD1 ENSG00000105447 CDS Human protein_coding chr19:48953673 chr19:48953673 nonsynonymous SNV 0.930 0 21 hm5C_associated_SNPs_130809 0 0 0 0 0 Ribosome 0 0.500231643921092 0.701921939849854 0.000463287842184856 hm5C_site_50867 DeepMRMD:0.701921939849854;iRNA_m5C:0.000463287842184856 50868 chr8 106814462 106814462 1 + C G ACC 106814462 - 106814442 106814482 41 GTTGGAAGCAGACCTCTTCAGTGGAGGGTCGTGGCGTGTAG GTTGGAAGCAGACCTCTTCACTGGAGGGTCGTGGCGTGTAG Direct Gain 0 0.957308232002586 0 0.610675692558289 prediction 0.914616464005172 Functional Gain - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106814462 chr8:106814462 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_130810 0 0 0 0 0 chromatin 0 0.500231643151767 0.221351385116578 0.00046328630353365 hm5C_site_50868 DeepMRMD:0.221351385116578;iRNA_m5C:0.00046328630353365 50869 chr20 39801217 39801217 1 + C G HNSC 39801217 - 39801197 39801237 41 TGGGCAAAGGATCGTAGTTGGAGGAATCCAGTCGCTGGCCC TGGGCAAAGGATCGTAGTTGCAGGAATCCAGTCGCTGGCCC Direct Gain 0 0.957297816134453 0 0.756276488304138 prediction 0.914595632268906 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39801217 chr20:39801217 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130811 0 0 0 0 0 Cytosol 0 0.500231643921092 0.512552976608276 0.000463287842183968 hm5C_site_50869 DeepMRMD:0.512552976608276;iRNA_m5C:0.000463287842183968 50870 chrX 70338645 70338645 1 + T G UCEC 70338645 - 70338625 70338665 41 GCCCCAGCCGCGGCCGCTTCAGGGGCCGGTGTTCGTAGCTC GCCCCAGCCGCGGCCGCTTCCGGGGCCGGTGTTCGTAGCTC Direct Gain 0 0.957282755469759 0 0.962869167327881 prediction 0.914565510939518 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70338645 chrX:70338645 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_130812 0 0 0 0 0 Cytosol 0 0.500231643921092 0.925738334655762 0.000463287842184856 hm5C_site_50870 DeepMRMD:0.925738334655762;iRNA_m5C:0.000463287842184856 50871 chr15 68126152 68126152 1 + T G BLCA 68126152 - 68126132 68126172 41 AGGGCAACAGCGGTGGCTTGAAGGAGCAGTTGCCAGTGCAG AGGGCAACAGCGGTGGCTTGCAGGAGCAGTTGCCAGTGCAG Direct Gain 0 0.957244345062422 0 0.947344839572906 prediction 0.914488690124845 Functional Gain - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68126152 chr15:68126152 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130813 0 0 0 0 0 exosome 0 0.500231643921092 0.894689679145812 0.000463287842184856 hm5C_site_50871 DeepMRMD:0.894689679145812;iRNA_m5C:0.000463287842184856 50872 chr8 55371663 55371663 1 + T C HNSC 55371663 + 55371643 55371683 41 GGCGGAGAAGCGGCCCTTCGTGGAGGAGGCAGAGCGGCTGC GGCGGAGAAGCGGCCCTTCGCGGAGGAGGCAGAGCGGCTGC Direct Gain 0 0.957228177523327 0 0.900762617588043 prediction 0.914456355046655 Functional Gain - SOX17 ENSG00000164736 CDS Human protein_coding chr8:55371663 chr8:55371663 nonsynonymous SNV 0.954 5 21 hm5C_associated_SNPs_130814 0 0 0 0 1 Cytosol 0 0.500231643921092 0.801525235176086 0.000463287842184856 hm5C_site_50872 DeepMRMD:0.801525235176086;iRNA_m5C:0.000463287842184856 50873 chr21 46911188 46911188 1 + C G rs79980197 46911188 - 46911168 46911208 41 CCACAGGTCCCGGGGGTCCGGGGGGGCCAGGGAGGCCCGGC CCACAGGTCCCGGGGGTCCGCGGGGGCCAGGGAGGCCCGGC Direct Gain 0 0.957224667079953 0 0.957645535469055 prediction 0.914449334159906 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46911188 chr21:46911188 nonsynonymous SNV 0.004 4 21 hm5C_associated_SNPs_130815 2 0 0 0 0 Nucleus 0 0.500231643921092 0.91529107093811 0.000463287842184856 hm5C_site_50873 DeepMRMD:0.91529107093811;iRNA_m5C:0.000463287842184856 not specified not specified 50874 chr19 20310789 20310789 1 + A C rs531216806 20310789 + 20310769 20310809 41 GCTGCTTGGGAGGCTGAGGCAGAGAATTGGAATTGCTTGAA GCTGCTTGGGAGGCTGAGGCCGAGAATTGGAATTGCTTGAA Direct Gain 0 0.957213503069501 0 0.792196869850159 prediction 0.914427006139003 Functional Gain - ZNF486 ENSG00000267383 ncRNA_intronic Human antisense chr19:20310789 chr19:20310789 . . 0 21 hm5C_associated_SNPs_130816 0 0 0 0 0 exosome 0 0.500231589843699 0.584393739700318 0.000463179687398618 hm5C_site_50874 DeepMRMD:0.584393739700318;iRNA_m5C:0.000463179687398618 50875 chr8 101252680 101252680 1 + T C rs6511 101252680 + 101252660 101252700 41 ACCTGCAGGGGAGGTCTCCATGGGATGCCTTGCTTCTGAGA ACCTGCAGGGGAGGTCTCCACGGGATGCCTTGCTTCTGAGA Direct Gain 0 0.957196821104117 0 0.935727596282959 prediction 0.914393642208235 Functional Gain - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101252680 chr8:101252680 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130817 1 0 0 0 1 chromatin 0 0.500231643921109 0.871455192565918 0.000463287842217053 hm5C_site_50875 DeepMRMD:0.871455192565918;iRNA_m5C:0.000463287842217053 not specified not specified 50876 chr4 187113041 187113041 1 + C G rs1055138 187113041 - 187113021 187113061 41 ACTGGCGCCGGCCAGGGAAAGGGCACTCGCCGCGCCCCACA ACTGGCGCCGGCCAGGGAAACGGCACTCGCCGCGCCCCACA Direct Gain 0 0.957191773029828 0 0.857433199882507 prediction 0.914383546059657 Functional Gain - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187113041 chr4:187113041 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130818 4 0 0 0 0 Nucleus 0 0.500231643921092 0.714866399765014 0.000463287842184856 hm5C_site_50876 DeepMRMD:0.714866399765014;iRNA_m5C:0.000463287842184856 Bietti crystalline corneoretinal dystrophy Bietti crystalline corneoretinal dystrophy 50877 chr4 120107259 120107259 1 + T C BLCA 120107259 + 120107239 120107279 41 TCTGGCAGACGGTCCTTTAATAGGACTCCTAAGGGATGGAT TCTGGCAGACGGTCCTTTAACAGGACTCCTAAGGGATGGAT Direct Gain 0 0.957186590872565 0 0.811500549316406 prediction 0.914373181745129 Functional Gain - MYOZ2 ENSG00000172399 CDS Human protein_coding chr4:120107259 chr4:120107259 synonymous SNV . 0 21 hm5C_associated_SNPs_130819 0 0 0 0 0 exosome 0 0.500231643921092 0.623001098632812 0.000463287842184856 hm5C_site_50877 DeepMRMD:0.623001098632812;iRNA_m5C:0.000463287842184856 50878 chr2 168725851 168725851 1 + G C LUSC 168725851 + 168725831 168725871 41 TCAGGCAATCAGAGAGACGTGGGGGGATGAGAACAACTTTA TCAGGCAATCAGAGAGACGTCGGGGGATGAGAACAACTTTA Direct Gain 0 0.957185249822611 0 0.789077758789062 prediction 0.914370499645223 Functional Gain - B3GALT1 ENSG00000172318 CDS Human protein_coding chr2:168725851 chr2:168725851 nonsynonymous SNV 0.987 5 21 hm5C_associated_SNPs_130820 0 0 0 0 0 chromatin 0 0.500231643925155 0.578155517578124 0.000463287850310801 hm5C_site_50878 DeepMRMD:0.578155517578124;iRNA_m5C:0.000463287850310801 50879 chr6 29429933 29429933 1 + C G READ 29429933 - 29429913 29429953 41 GGGTGGATGATGGTGGCATAGTGGAGGGGCTGGCAGACAGC GGGTGGATGATGGTGGCATACTGGAGGGGCTGGCAGACAGC Direct Gain 0 0.95718493657553 0 0.842151522636414 prediction 0.914369873151061 Functional Gain - OR2H1 ENSG00000204688 CDS Human protein_coding chr6:29429933 chr6:29429933 nonsynonymous SNV 0.817 0 21 hm5C_associated_SNPs_130821 0 0 0 0 0 unknown 0 0.500231641879343 0.684303045272828 0.00046328375868554 hm5C_site_50879 DeepMRMD:0.684303045272828;iRNA_m5C:0.00046328375868554 50880 chr3 9956963 9956963 1 + C G rs572015498 9956963 - 9956943 9956983 41 TCCGAGTCCGCCGCGTGCAGGAGGAGCACTGGCCGCGCTGG TCCGAGTCCGCCGCGTGCAGCAGGAGCACTGGCCGCGCTGG Direct Gain 0 0.957163202294307 0 0.898247957229614 prediction 0.914326404588614 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9956963 chr3:9956963 nonsynonymous SNV 0.057 1 21 hm5C_associated_SNPs_130822 0 0 0 0 0 Ribosome 0 0.500231647096569 0.796495914459228 0.000463294193138175 hm5C_site_50880 DeepMRMD:0.796495914459228;iRNA_m5C:0.000463294193138175 50881 chr8 61654811 61654811 1 + A G SARC 61654811 - 61654791 61654831 41 GGGAGGATTCGGGGAGAATCTGGGACTGTGGGCAACGGATT GGGAGGATTCGGGGAGAATCCGGGACTGTGGGCAACGGATT Direct Gain 0 0.95715519083159 0 0.918466567993164 prediction 0.91431038166318 Functional Gain - CHD7 ENSG00000171316 CDS Human protein_coding chr8:61654811 chr8:61654811 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130823 0 0 0 0 0 Cytosol 0 0.500231643921092 0.836933135986328 0.000463287842184856 hm5C_site_50881 DeepMRMD:0.836933135986328;iRNA_m5C:0.000463287842184856 50882 chr2 131487481 131487481 1 + G C LUAD 131487481 + 131487461 131487501 41 CCAAGACTTCAGGCATCTGGGGGCAGGGCTATTCCCGGGCC CCAAGACTTCAGGCATCTGGCGGCAGGGCTATTCCCGGGCC Direct Gain 0 0.95713691534862 0 0.932116866111755 prediction 0.91427383069724 Functional Gain - GPR148 ENSG00000173302 CDS Human protein_coding chr2:131487481 chr2:131487481 nonsynonymous SNV 0.118 0 21 hm5C_associated_SNPs_130824 0 0 0 0 0 unknown 0 0.500231643921092 0.86423373222351 0.000463287842184856 hm5C_site_50882 DeepMRMD:0.86423373222351;iRNA_m5C:0.000463287842184856 50883 chr1 16069635 16069635 1 + C G SKCM 16069635 - 16069615 16069655 41 AGGGAGAACTCGAGCACCACGAGGGCAGCCACCCGGGACCC AGGGAGAACTCGAGCACCACCAGGGCAGCCACCCGGGACCC Direct Gain 0 0.957060497178136 0 0.964646220207214 prediction 0.914120994356271 Functional Gain - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16069635 chr1:16069635 synonymous SNV . 0 21 hm5C_associated_SNPs_130825 0 0 0 0 0 exosome 0 0.500231643921092 0.929292440414428 0.000463287842184856 hm5C_site_50883 DeepMRMD:0.929292440414428;iRNA_m5C:0.000463287842184856 50884 chr16 88804765 88804765 1 + T C rs114403731 88804765 + 88804745 88804785 41 GCTGAAGCCCCGAGTGCTGATGGGAAAGTGGCAGGCCCACC GCTGAAGCCCCGAGTGCTGACGGGAAAGTGGCAGGCCCACC Direct Gain 0 0.957031936373563 0 0.908210873603821 prediction 0.914063872747125 Functional Gain - PIEZO1 ENSG00000103335 CDS Human protein_coding chr16:88804765 chr16:88804765 nonsynonymous SNV 0.879 0 21 hm5C_associated_SNPs_130826 0 0 0 0 1 Endoplasmic reticulum 0 0.500231643921092 0.816421747207642 0.000463287842184856 hm5C_site_50884 DeepMRMD:0.816421747207642;iRNA_m5C:0.000463287842184856 50885 chr22 39498038 39498038 1 + G C rs139302 39498038 + 39498018 39498058 41 GCCATAAAGCGACGGCTTGAGAGGATAAAGGTGAGGCACTG GCCATAAAGCGACGGCTTGACAGGATAAAGGTGAGGCACTG Direct Gain 0 0.957013199955962 0 0.86371123790741 prediction 0.914026399911923 Functional Gain - APOBEC3H ENSG00000100298 CDS Human protein_coding chr22:39498038 chr22:39498038 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130827 0 0 0 0 1 exosome 0 0.500228203431331 0.72742247581482 0.00045640686266224 hm5C_site_50885 DeepMRMD:0.72742247581482;iRNA_m5C:0.00045640686266224 50886 chr2 108917374 108917374 1 + T C LUSC 108917374 + 108917354 108917394 41 AGCTGCTGCCACCGTCTTTCTGGGAAAACAACTGCAAGGTA AGCTGCTGCCACCGTCTTTCCGGGAAAACAACTGCAAGGTA Direct Gain 0 0.957004448319482 0 0.863787949085236 prediction 0.914008896638963 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108917374 chr2:108917374 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_130828 0 0 1 0 3 exosome 0 0.500231643921093 0.727575898170472 0.000463287842186411 hm5C_site_50886 DeepMRMD:0.727575898170472;iRNA_m5C:0.000463287842186411 50887 chr16 57785933 57785933 1 + A G UCEC 57785933 - 57785913 57785953 41 GGAGGCCAGGAGGTACTCGTTGGGGTGAAACTCGACCACGT GGAGGCCAGGAGGTACTCGTCGGGGTGAAACTCGACCACGT Direct Gain 0 0.956975735908647 0 0.934893369674683 prediction 0.913951471817293 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57785933 chr16:57785933 nonsynonymous SNV 0.995 1 21 hm5C_associated_SNPs_130829 0 0 0 0 0 Cytosol 0 0.50023164392133 0.869786739349366 0.000463287842660476 hm5C_site_50887 DeepMRMD:0.869786739349366;iRNA_m5C:0.000463287842660476 50888 chr7 23245632 23245632 1 + A C rs858294 23245632 + 23245612 23245652 41 CCTCCAGGCCGGCGGGTGAGATGGGGAGATGAGCTAGGGGG CCTCCAGGCCGGCGGGTGAGCTGGGGAGATGAGCTAGGGGG Direct Gain 0 0.956962451327049 0 0.715965390205383 prediction 0.913924902654098 Functional Gain - NUPL2;GPNMB ENSG00000226816 ncRNA_exonic Human lincRNA chr7:23245632 chr7:23245632 . . 0 21 hm5C_associated_SNPs_130830 0 0 0 0 0 unknown 0 0.500231643921092 0.431930780410766 0.000463287842184856 hm5C_site_50888 DeepMRMD:0.431930780410766;iRNA_m5C:0.000463287842184856 50889 chr14 24836332 24836332 1 + A G LUAD 24836332 - 24836312 24836352 41 TTGTGTGAGAGGGAGTTAGATGGGAGATTCGTGACTCGGTG TTGTGTGAGAGGGAGTTAGACGGGAGATTCGTGACTCGGTG Direct Gain 0 0.956950770558452 0 0.937736809253693 prediction 0.913901541116903 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24836332 chr14:24836332 synonymous SNV . 0 21 hm5C_associated_SNPs_130831 0 0 0 0 0 cytosol 0 0.500231643921092 0.875473618507386 0.000463287842184856 hm5C_site_50889 DeepMRMD:0.875473618507386;iRNA_m5C:0.000463287842184856 50890 chr6 148865741 148865741 1 + A G UCEC 148865741 - 148865721 148865761 41 GGGCTGCCAGGCGCCTGCCCTGAGAGAGGCCTGGGAGCCAG GGGCTGCCAGGCGCCTGCCCCGAGAGAGGCCTGGGAGCCAG Direct Gain 0 0.956943668557713 0 0.871002376079559 prediction 0.913887337115427 Functional Gain - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148865741 chr6:148865741 synonymous SNV . 0 21 hm5C_associated_SNPs_130832 0 0 0 0 0 Cytosol 0 0.500231643920989 0.742004752159118 0.000463287841977467 hm5C_site_50890 DeepMRMD:0.742004752159118;iRNA_m5C:0.000463287841977467 50891 chr4 57180710 57180710 1 + G C rs148920534 57180710 + 57180690 57180730 41 TGGAGGAGCGGAGGCGGCAGGAGGAGGAGGAAGGAAGATGC TGGAGGAGCGGAGGCGGCAGCAGGAGGAGGAAGGAAGATGC Direct Gain 0 0.956893521242912 0 0.889471888542175 prediction 0.913787042485825 Functional Gain - KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57180710 chr4:57180710 nonsynonymous SNV 0.142 0 21 hm5C_associated_SNPs_130833 0 0 0 0 0 cytosol 0 0.50023164024161 0.77894377708435 0.000463280483219641 hm5C_site_50891 DeepMRMD:0.77894377708435;iRNA_m5C:0.000463280483219641 50892 chr2 103014717 103014717 1 + T C rs573789372 103014717 + 103014697 103014737 41 CCCCAAAGGGAGCCCAGCACTGGGAGCCTTCTTGATGATCT CCCCAAAGGGAGCCCAGCACCGGGAGCCTTCTTGATGATCT Direct Gain 0 0.956892546136238 0 0.789265155792236 prediction 0.913785092272475 Functional Gain - IL18R1 ENSG00000115604 UTR3 Human protein_coding chr2:103014717 chr2:103014717 . . 0 21 hm5C_associated_SNPs_130834 0 0 0 0 0 Nucleus 0 0.500231643921092 0.578530311584472 0.000463287842184856 hm5C_site_50892 DeepMRMD:0.578530311584472;iRNA_m5C:0.000463287842184856 50893 chr4 26426000 26426000 1 + A C STAD 26426000 + 26425980 26426020 41 AACAAAGGTGGCTCTGTTTAATCGACTACGATCCCAGACAG AACAAAGGTGGCTCTGTTTACTCGACTACGATCCCAGACAG Direct Gain 0 0.956890374562831 0 0.865353941917419 prediction 0.913780749125662 Functional Gain - RBPJ ENSG00000168214 CDS Human protein_coding chr4:26426000 chr4:26426000 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_130835 0 0 1 0 1 Endoplasmic reticulum 0 0.500232913069372 0.730707883834838 0.000465826138743131 hm5C_site_50893 DeepMRMD:0.730707883834838;iRNA_m5C:0.000465826138743131 50894 chr9 382521 382521 1 + A G COAD 382521 - 382501 382541 41 CCGAGGGTCTAGGAGGGCAGTGGGAGCGCCTGCACCCCACC CCGAGGGTCTAGGAGGGCAGCGGGAGCGCCTGCACCCCACC Direct Gain 0 0.956859402680552 0 0.843285381793976 prediction 0.913718805361103 Functional Gain - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:382521 chr9:382521 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130836 0 0 0 0 0 Cytosol 0 0.500231644036858 0.686570763587952 0.000463288073715429 hm5C_site_50894 DeepMRMD:0.686570763587952;iRNA_m5C:0.000463288073715429 50895 chr7 99751610 99751610 1 + G C rs77496317 99751610 + 99751590 99751630 41 CTGCCGGAGGGCGAGGGTCGGAGAAGCGGATTGGGTCCTGG CTGCCGGAGGGCGAGGGTCGCAGAAGCGGATTGGGTCCTGG Direct Gain 0 0.95685555411519 0 0.786463737487793 prediction 0.91371110823038 Functional Gain - LAMTOR4 ENSG00000188186 UTR3 Human protein_coding chr7:99751610 chr7:99751610 . . 0 21 hm5C_associated_SNPs_130837 0 0 1 0 0 Cytosol 0 0.500231643921154 0.572927474975586 0.000463287842308091 hm5C_site_50895 DeepMRMD:0.572927474975586;iRNA_m5C:0.000463287842308091 50896 chr3 134851723 134851723 1 + G C HNSC 134851723 + 134851703 134851743 41 GCTCCCGCTGTGACGACAATGTGGAGTTTGTGCCCAGGCAG GCTCCCGCTGTGACGACAATCTGGAGTTTGTGCCCAGGCAG Direct Gain 0 0.956854360033076 0 0.90445613861084 prediction 0.913708720066153 Functional Gain - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851723 chr3:134851723 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_130838 0 0 0 0 0 exosome 0 0.500231643907979 0.80891227722168 0.000463287815958502 hm5C_site_50896 DeepMRMD:0.80891227722168;iRNA_m5C:0.000463287815958502 50897 chr10 124909094 124909094 1 + A G PAAD 124909094 - 124909074 124909114 41 GCCCGAGCCTCCGCTGCCCTTGGGGGTACCTGAGGAGCGAG GCCCGAGCCTCCGCTGCCCTCGGGGGTACCTGAGGAGCGAG Direct Gain 0 0.956843301263573 0 0.96208667755127 prediction 0.913686602527146 Functional Gain - HMX2 ENSG00000188816 CDS Human protein_coding chr10:124909094 chr10:124909094 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130839 0 0 0 0 0 exosome 0 0.500231614848731 0.92417335510254 0.000463229697462264 hm5C_site_50897 DeepMRMD:0.92417335510254;iRNA_m5C:0.000463229697462264 50898 chr22 39772181 39772181 1 + C G rs75472301 39772181 - 39772161 39772201 41 CAGGTGAAGATGGAGAAAAAGGAGAAGGCGATGGCGGCCCG CAGGTGAAGATGGAGAAAAACGAGAAGGCGATGGCGGCCCG Direct Gain 0 0.956820424742292 0 0.830558121204376 prediction 0.913640849484583 Functional Gain - SYNGR1 ENSG00000100321 CDS Human protein_coding chr22:39772181 chr22:39772181 synonymous SNV . 0 21 hm5C_associated_SNPs_130840 0 0 0 0 0 Endoplasmic reticulum 0 0.500231641023435 0.661116242408752 0.000463282046870184 hm5C_site_50898 DeepMRMD:0.661116242408752;iRNA_m5C:0.000463282046870184 50899 chr11 66392840 66392840 1 + A G LUAD 66392840 - 66392820 66392860 41 CGTAGGCTGCTGCGGCACCATAGGAGCCAGTGGCCGCAGCA CGTAGGCTGCTGCGGCACCACAGGAGCCAGTGGCCGCAGCA Direct Gain 0 0.956762945943905 0 0.91231507062912 prediction 0.913525891887811 Functional Gain - RBM14 ENSG00000239306 CDS Human protein_coding chr11:66392840 chr11:66392840 nonsynonymous SNV 0.985 3 21 hm5C_associated_SNPs_130841 0 0 0 0 0 Nucleus 0 0.500232455685026 0.82463014125824 0.000464911370051224 hm5C_site_50899 DeepMRMD:0.82463014125824;iRNA_m5C:0.000464911370051224 50900 chr1 70904459 70904459 1 + G C PCPG 70904459 + 70904439 70904479 41 TTCGACTTTCTGTGGGCTTAGAGGATGAGGAAGACCTACTG TTCGACTTTCTGTGGGCTTACAGGATGAGGAAGACCTACTG Direct Gain 0 0.9567530041667 0 0.751049399375916 prediction 0.913506008333399 Functional Gain - CTH ENSG00000116761 CDS Human protein_coding chr1:70904459 chr1:70904459 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_130842 0 0 1 0 2 Cytosol 0 0.500231643522866 0.502098798751832 0.000463287045732619 hm5C_site_50900 DeepMRMD:0.502098798751832;iRNA_m5C:0.000463287045732619 50901 chr11 20404757 20404757 1 + T C rs3781679 20404757 + 20404737 20404777 41 TCTCTCAAGCCATGACCACATTGGAGAAATGGTTTTTATTG TCTCTCAAGCCATGACCACACTGGAGAAATGGTTTTTATTG Direct Gain 0 0.956742967977769 0 0.499335765838623 prediction 0.913485935955539 Functional Gain - HTATIP2 ENSG00000109854 UTR3 Human protein_coding chr11:20404757 chr11:20404757 . . 0 21 hm5C_associated_SNPs_130843 0 0 0 0 0 Endoplasmic reticulum 0 0.500232798730498 0 0.00046559746099617 hm5C_site_50901 DeepMRMD:0;iRNA_m5C:0.00046559746099617 50902 chr22 44565005 44565005 1 + C G rs114970265 44565005 - 44564985 44565025 41 ATCGTCAAGCCTGGGTCCTCGGGGAGCCGGCGTTCCTGCTG ATCGTCAAGCCTGGGTCCTCCGGGAGCCGGCGTTCCTGCTG Direct Gain 0 0.956741769440684 0 0.884652376174927 prediction 0.913483538881368 Functional Gain - PARVB ENSG00000188677 UTR3 Human protein_coding chr22:44565005 chr22:44565005 . . 0 21 hm5C_associated_SNPs_130844 0 0 0 0 0 Ribosome 0 0.500231659487486 0.769304752349854 0.000463318974972093 hm5C_site_50902 DeepMRMD:0.769304752349854;iRNA_m5C:0.000463318974972093 50903 chr15 43819231 43819231 1 + C G THCA 43819231 - 43819211 43819251 41 AGCTGGGGAGAGGGGTGCAGGGGGGAGGGGTCTGTCCTTGG AGCTGGGGAGAGGGGTGCAGCGGGGAGGGGTCTGTCCTTGG Direct Gain 0 0.956739154477723 0 0.882500350475311 prediction 0.913478308955445 Functional Gain - MAP1A ENSG00000166963 CDS Human protein_coding chr15:43819231 chr15:43819231 nonsynonymous SNV 0.949 2 21 hm5C_associated_SNPs_130845 0 0 0 0 0 nucleolus 0 0.500231643921092 0.765000700950622 0.000463287842183524 hm5C_site_50903 DeepMRMD:0.765000700950622;iRNA_m5C:0.000463287842183524 50904 chr11 111594550 111594550 1 + A G COAD 111594550 - 111594530 111594570 41 CGTGGTGGTGGAGGGGGTGGTGGCGGTGGCGGCTGCTGCTG CGTGGTGGTGGAGGGGGTGGCGGCGGTGGCGGCTGCTGCTG Direct Gain 0 0.956727983387737 0 0.904154300689697 prediction 0.913455966775474 Functional Gain - SIK2 ENSG00000170145 CDS Human protein_coding chr11:111594550 chr11:111594550 synonymous SNV . 0 21 hm5C_associated_SNPs_130846 0 0 0 0 0 Cytosol 0 0.500231643921092 0.808308601379394 0.000463287842184856 hm5C_site_50904 DeepMRMD:0.808308601379394;iRNA_m5C:0.000463287842184856 50905 chr7 76134929 76134929 1 + C G rs562179171 76134929 - 76134909 76134949 41 CCACCAGAGGCGGGCGTGCTGGGGTGCGAGGTCACTGCTGC CCACCAGAGGCGGGCGTGCTCGGGTGCGAGGTCACTGCTGC Direct Gain 0 0.956678606739179 0 0.986363649368286 prediction 0.913357213478357 Functional Gain - DTX2 ENSG00000091073 UTR3 Human protein_coding chr7:76134929 chr7:76134929 . . 0 21 hm5C_associated_SNPs_130847 0 0 0 0 0 Nucleus 0 0.500231643921093 0.972727298736572 0.000463287842185078 hm5C_site_50905 DeepMRMD:0.972727298736572;iRNA_m5C:0.000463287842185078 50906 chr11 125496665 125496665 1 + T C LUSC 125496665 + 125496645 125496685 41 CGAGGTGCTCGGTGGAGTCATGGCAGTGCCCTTTGTGGAAG CGAGGTGCTCGGTGGAGTCACGGCAGTGCCCTTTGTGGAAG Direct Gain 0 0.956668343603725 0 0.686904907226562 prediction 0.91333668720745 Functional Gain - CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125496665 chr11:125496665 nonsynonymous SNV 0.933 4 21 hm5C_associated_SNPs_130848 0 0 1 0 1 Ribosome 0 0.500231637091706 0.373809814453124 0.000463274183412299 hm5C_site_50906 DeepMRMD:0.373809814453124;iRNA_m5C:0.000463274183412299 50907 chr1 4772557 4772557 1 + A G UCEC 4772557 - 4772537 4772577 41 ACAGTTGTCTTCCGTGTTTGTAGGATGGAGACCGTGGTGGG ACAGTTGTCTTCCGTGTTTGCAGGATGGAGACCGTGGTGGG Direct Gain 0 0.956668100479253 0 0.821032583713531 prediction 0.913336200958506 Functional Gain - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4772557 chr1:4772557 synonymous SNV . 0 21 hm5C_associated_SNPs_130849 0 0 0 0 0 exosome 0 0.50023164555688 0.642065167427062 0.000463291113760755 hm5C_site_50907 DeepMRMD:0.642065167427062;iRNA_m5C:0.000463291113760755 50908 chr17 39240781 39240781 1 + C G BRCA 39240781 - 39240761 39240801 41 AGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGAC AGCAGCTGGGGCGGCAGCAGCTGGGCTGGCAGCACACAGAC Direct Gain 0 0.956664799041154 0 0.755278348922729 prediction 0.913329598082309 Functional Gain - KRTAP4-7 ENSG00000240871 CDS Human protein_coding chr17:39240781 chr17:39240781 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130850 0 0 0 0 0 unknown 0 0.500231643920905 0.510556697845458 0.000463287841809601 hm5C_site_50908 DeepMRMD:0.510556697845458;iRNA_m5C:0.000463287841809601 50909 chr22 51178394 51178394 1 + T C KIRC 51178394 + 51178374 51178414 41 GGTGGCCGGCTGGGGATATATAGAAGAGAAAGGTGAGTATG GGTGGCCGGCTGGGGATATACAGAAGAGAAAGGTGAGTATG Direct Gain 0 0.956648503543566 0 0.777870118618011 prediction 0.913297007087132 Functional Gain - ACR ENSG00000100312 CDS Human protein_coding chr22:51178394 chr22:51178394 nonsynonymous SNV 0.988 0 21 hm5C_associated_SNPs_130851 0 0 0 0 1 exosome 0 0.500231643921092 0.555740237236022 0.000463287842184634 hm5C_site_50909 DeepMRMD:0.555740237236022;iRNA_m5C:0.000463287842184634 50910 chr4 3475330 3475330 1 + T C UCEC 3475330 + 3475310 3475350 41 GCCACGAGGCCATGTGTGCGTGGGATGCCCGGATCCGCTAT GCCACGAGGCCATGTGTGCGCGGGATGCCCGGATCCGCTAT Direct Gain 0 0.956623710419876 0 0.904797673225403 prediction 0.913247420839751 Functional Gain - DOK7 ENSG00000175920 CDS Human protein_coding chr4:3475330 chr4:3475330 nonsynonymous SNV 0.892 5 21 hm5C_associated_SNPs_130852 0 0 0 0 0 nucleus 0 0.500232429029325 0.809595346450806 0.000464858058649931 hm5C_site_50910 DeepMRMD:0.809595346450806;iRNA_m5C:0.000464858058649931 50911 chr7 30200889 30200889 1 + T C rs111454409 30200889 + 30200869 30200909 41 AATAAGGGAGAATGGGAGAGTTGGGGTCTGACAGTTACCAC AATAAGGGAGAATGGGAGAGCTGGGGTCTGACAGTTACCAC Direct Gain 0 0.956612419770945 0 0.477876663208008 prediction 0.913224839541889 Functional Gain - MTURN ENSG00000180354 UTR3 Human protein_coding chr7:30200889 chr7:30200889 . . 0 21 hm5C_associated_SNPs_130853 0 0 1 0 0 Endoplasmic reticulum 0 0.500231643921092 0 0.000463287842184856 hm5C_site_50911 DeepMRMD:0;iRNA_m5C:0.000463287842184856 50912 chr2 241406578 241406578 1 + A G rs3792216 241406578 - 241406558 241406598 41 GTTCCTGATCTGGGTGAGGATGGGAGCAGGCGGGTCCTGGC GTTCCTGATCTGGGTGAGGACGGGAGCAGGCGGGTCCTGGC Direct Gain 0 0.956597900898344 0 0.939793765544891 prediction 0.913195801796688 Functional Gain - GPC1 ENSG00000063660 UTR3 Human protein_coding chr2:241406578 chr2:241406578 . . 0 21 hm5C_associated_SNPs_130854 0 0 0 0 0 Cytosol 0 0.500231653998774 0.879587531089782 0.000463307997547124 hm5C_site_50912 DeepMRMD:0.879587531089782;iRNA_m5C:0.000463307997547124 50913 chr20 61942783 61942783 1 + A G rs3746376 61942783 - 61942763 61942803 41 TGGACGGTTCTGGGCGTCACTGCGGCCAGGGTCAGCGCCCG TGGACGGTTCTGGGCGTCACCGCGGCCAGGGTCAGCGCCCG Direct Gain 0 0.956575735610999 0 0.923170685768127 prediction 0.913151471221999 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61942783 chr20:61942783 synonymous SNV . 0 21 hm5C_associated_SNPs_130855 0 0 0 0 0 exosome 0 0.500231641774647 0.846341371536254 0.000463283549294369 hm5C_site_50913 DeepMRMD:0.846341371536254;iRNA_m5C:0.000463283549294369 50914 chr1 120050150 120050150 1 + G C BLCA 120050150 + 120050130 120050170 41 GCAGGAGGGTTTCTGGGACAGAGGATCATCCGCCTCTTGGT GCAGGAGGGTTTCTGGGACACAGGATCATCCGCCTCTTGGT Direct Gain 0 0.95657382337487 0 0.783252120018005 prediction 0.913147646749739 Functional Gain - HSD3B1 ENSG00000203857 CDS Human protein_coding chr1:120050150 chr1:120050150 nonsynonymous SNV 0.796 2 21 hm5C_associated_SNPs_130856 0 0 0 0 1 exosome 0 0.50023164392128 0.56650424003601 0.000463287842560112 hm5C_site_50914 DeepMRMD:0.56650424003601;iRNA_m5C:0.000463287842560112 50915 chr16 855532 855532 1 + C G LIHC 855532 - 855512 855552 41 TGACCCATGGGGTGGTAAGTGGGGTGTGCAGCTGCCCCACC TGACCCATGGGGTGGTAAGTCGGGTGTGCAGCTGCCCCACC Direct Gain 0 0.956554747876246 0 0.787656664848328 prediction 0.913109495752493 Functional Gain - PRR25 ENSG00000167945 CDS Human protein_coding chr16:855532 chr16:855532 synonymous SNV . 0 21 hm5C_associated_SNPs_130857 0 0 0 0 0 exosome 0 0.500231643921092 0.575313329696656 0.000463287842184856 hm5C_site_50915 DeepMRMD:0.575313329696656;iRNA_m5C:0.000463287842184856 50916 chr15 63796917 63796917 1 + C G rs372474619 63796917 - 63796897 63796937 41 GCCACGAGGAGGGCAGCTGGGAGGACTGCGGCTCCAGGACC GCCACGAGGAGGGCAGCTGGCAGGACTGCGGCTCCAGGACC Direct Gain 0 0.956524679170955 0 0.840164542198181 prediction 0.91304935834191 Functional Gain - USP3 ENSG00000140455 UTR5 Human protein_coding chr15:63796917 chr15:63796917 . . 0 21 hm5C_associated_SNPs_130858 0 0 0 0 0 Cytosol 0 0.500231643921138 0.680329084396362 0.000463287842275006 hm5C_site_50916 DeepMRMD:0.680329084396362;iRNA_m5C:0.000463287842275006 50917 chr5 176085623 176085623 1 + G C rs76178706 176085623 + 176085603 176085643 41 CAAGAGAGTGCGGTGGGGATGGGGGGGAGAGCACGGGTCCC CAAGAGAGTGCGGTGGGGATCGGGGGGAGAGCACGGGTCCC Direct Gain 0 0.956521633664644 0 0.983733355998993 prediction 0.913043267329288 Functional Gain - TSPAN17 ENSG00000048140 UTR3 Human protein_coding chr5:176085623 chr5:176085623 . . 0 21 hm5C_associated_SNPs_130859 0 0 1 0 0 Endoplasmic reticulum 0 0.500231643921092 0.967466711997986 0.000463287842184856 hm5C_site_50917 DeepMRMD:0.967466711997986;iRNA_m5C:0.000463287842184856 50918 chr18 10550121 10550121 1 + G C rs2305370 10550121 + 10550101 10550141 41 GTTCCAGGAGGGGGAATCAAGAAGAAATCACCTGCAACACC GTTCCAGGAGGGGGAATCAACAAGAAATCACCTGCAACACC Direct Gain 0 0.956507952994657 0 0.817528426647186 prediction 0.913015905989315 Functional Gain - NAPG ENSG00000134265 CDS Human protein_coding chr18:10550121 chr18:10550121 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_130860 0 0 1 0 1 Cytosol 0 0.500231643921092 0.635056853294372 0.000463287842184856 hm5C_site_50918 DeepMRMD:0.635056853294372;iRNA_m5C:0.000463287842184856 50919 chr12 120650328 120650328 1 + T C LUAD 120650328 + 120650308 120650348 41 CGTGGTAGTGCACCTCACAGTAGGGCTGCCCGTCGTGCTCG CGTGGTAGTGCACCTCACAGCAGGGCTGCCCGTCGTGCTCG Direct Gain 0 0.956479922801764 0 0.84460324048996 prediction 0.912959845603528 Functional Gain - PXN ENSG00000089159 CDS Human protein_coding chr12:120650328 chr12:120650328 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_130861 0 0 1 0 0 Cytosol 0 0.500231643837241 0.68920648097992 0.00046328767448145 hm5C_site_50919 DeepMRMD:0.68920648097992;iRNA_m5C:0.00046328767448145 50920 chrX 12809712 12809712 1 + G C BLCA 12809712 + 12809692 12809732 41 GAGCTGGGCAAGGTGGTCACGAAGAAGTTCAGCAACCAGGA GAGCTGGGCAAGGTGGTCACCAAGAAGTTCAGCAACCAGGA Direct Gain 0 0.956458153435812 0 0.586598694324493 prediction 0.912916306871624 Functional Gain - PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12809712 chrX:12809712 synonymous SNV . 0 21 hm5C_associated_SNPs_130862 0 0 1 0 1 Ribosome 0 0.500231684161604 0.173197388648986 0.000463368323208257 hm5C_site_50920 DeepMRMD:0.173197388648986;iRNA_m5C:0.000463368323208257 50921 chr10 101469947 101469947 1 + A G rs115283180 101469947 - 101469927 101469967 41 AAATGCCGGCAAGTGCTCTGTAGGAGGGGCCACTTAGGAAA AAATGCCGGCAAGTGCTCTGCAGGAGGGGCCACTTAGGAAA Direct Gain 0 0.956429184743304 0 0.90438586473465 prediction 0.912858369486608 Functional Gain - ENTPD7 ENSG00000198018;ENSG00000014919 intergenic Human other chr10:101469947 chr10:101469947 . . 0 21 hm5C_associated_SNPs_130863 0 0 1 0 0 Endoplasmic reticulum 0 0.500231647201392 0.8087717294693 0.000463294402783143 hm5C_site_50921 DeepMRMD:0.8087717294693;iRNA_m5C:0.000463294402783143 50922 chr10 70932191 70932191 1 + A C rs11552063 70932191 + 70932171 70932211 41 ACCAAAATGAAACCTGCTGTATGGAAACTACTTTCACTTAT ACCAAAATGAAACCTGCTGTCTGGAAACTACTTTCACTTAT Direct Gain 0 0.956426238502248 0 0.833877861499786 prediction 0.912852477004495 Functional Gain - VPS26A ENSG00000122958 UTR3 Human protein_coding chr10:70932191 chr10:70932191 . . 0 21 hm5C_associated_SNPs_130864 0 0 1 0 0 Ribosome 0 0.500231643038982 0.667755722999572 0.000463286077964087 hm5C_site_50922 DeepMRMD:0.667755722999572;iRNA_m5C:0.000463286077964087 50923 chr19 15807861 15807861 1 + T C COAD 15807861 + 15807841 15807881 41 CGCCGAGGGCGGGCTTTGGCTGCGGGTGGAGCCCCTGAATG CGCCGAGGGCGGGCTTTGGCCGCGGGTGGAGCCCCTGAATG Direct Gain 0 0.956414417940837 0 0.947697639465332 prediction 0.912828835881674 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15807861 chr19:15807861 nonsynonymous SNV 0.942 4 21 hm5C_associated_SNPs_130865 0 0 1 0 0 exosome 0 0.500231643921092 0.895395278930664 0.000463287842184856 hm5C_site_50923 DeepMRMD:0.895395278930664;iRNA_m5C:0.000463287842184856 50924 chr12 7045160 7045160 1 + G C rs139909258 7045160 + 7045140 7045180 41 GGGGAGGGGCTGCCTCATCAGTGGGGGGCCCTAATGGGGGT GGGGAGGGGCTGCCTCATCACTGGGGGGCCCTAATGGGGGT Direct Gain 0 0.956387540733603 0 0.823957324028015 prediction 0.912775081467206 Functional Gain - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7045160 chr12:7045160 nonsynonymous SNV 0.756 0 21 hm5C_associated_SNPs_130866 0 0 1 0 0 Endoplasmic reticulum 0 0.500231643921093 0.64791464805603 0.0004632878421853 hm5C_site_50924 DeepMRMD:0.64791464805603;iRNA_m5C:0.0004632878421853 50925 chr6 130762619 130762619 1 + T C rs41285314 130762619 + 130762599 130762639 41 GCTACCAAGGAATAATTCCATTGGGGAGTCGTTGTCGAGTC GCTACCAAGGAATAATTCCACTGGGGAGTCGTTGTCGAGTC Direct Gain 0 0.956381256602169 0 0.758250057697296 prediction 0.912762513204337 Functional Gain - TMEM200A ENSG00000164484 CDS Human protein_coding chr6:130762619 chr6:130762619 nonsynonymous SNV 0.127 0 21 hm5C_associated_SNPs_130867 0 0 0 0 0 exosome 0 0.500231643921934 0.516500115394592 0.000463287843868398 hm5C_site_50925 DeepMRMD:0.516500115394592;iRNA_m5C:0.000463287843868398 50926 chr17 2207251 2207251 1 + G C rs370363297 2207251 + 2207231 2207271 41 GCGGGCGCTGCGCGTGCGCAGAGGTGCGGCCGGGGAGGCGC GCGGGCGCTGCGCGTGCGCACAGGTGCGGCCGGGGAGGCGC Direct Gain 0 0.956349317471474 0 0.810832500457764 prediction 0.912698634942948 Functional Gain - SRR ENSG00000167720 UTR5 Human protein_coding chr17:2207251 chr17:2207251 . . 0 21 hm5C_associated_SNPs_130868 0 0 0 0 1 Cytosol 0 0.5002316443013 0.621665000915528 0.000463288602599032 hm5C_site_50926 DeepMRMD:0.621665000915528;iRNA_m5C:0.000463288602599032 50927 chr3 189526234 189526234 1 + C G rs146612442 189526234 - 189526214 189526254 41 CCTGGGTAGTCGGTGTTGGAGGGGATGGCGGGTGATGGAGA CCTGGGTAGTCGGTGTTGGACGGGATGGCGGGTGATGGAGA Direct Gain 0 0.956333317020622 0 0.873523592948914 prediction 0.912666634041244 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189526234 chr3:189526234 synonymous SNV . 0 21 hm5C_associated_SNPs_130869 0 0 0 0 0 chromatin 0 0.500231641320688 0.747047185897828 0.000463282641376406 hm5C_site_50927 DeepMRMD:0.747047185897828;iRNA_m5C:0.000463282641376406 50928 chr20 42635350 42635350 1 + A G rs202060984 42635350 - 42635330 42635370 41 CTGGGAGGTCCATGGCCTGATAGGAGTAGGCAGGGAGCAGA CTGGGAGGTCCATGGCCTGACAGGAGTAGGCAGGGAGCAGA Direct Gain 0 0.95631758899392 0 0.477720081806183 prediction 0.912635177987841 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42635350 chr20:42635350 nonsynonymous SNV 0.992 3 21 hm5C_associated_SNPs_130870 0 0 0 0 0 exosome 0 0.500231644453044 0 0.000463288906088266 hm5C_site_50928 DeepMRMD:0;iRNA_m5C:0.000463288906088266 50929 chr10 13629129 13629129 1 + G C UCEC 13629129 + 13629109 13629149 41 TCCTTCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTG TCCTTCGGAAGCGGCAGCTGCTGGAGGACAGGAACCTGCTG Direct Gain 0 0.95631381002392 0 0.825000643730164 prediction 0.912627620047839 Functional Gain - PRPF18 ENSG00000165630 CDS Human protein_coding chr10:13629129 chr10:13629129 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130871 0 0 1 1 2 Cytosol 0 0.500231644121715 0.650001287460328 0.000463288243429449 hm5C_site_50929 DeepMRMD:0.650001287460328;iRNA_m5C:0.000463288243429449 50930 chr4 186069082 186069082 1 + T C rs11930741 186069082 + 186069062 186069102 41 AGGCAGAGGTTGCAGTGAGCTGAGATGGCATGCCACCACAT AGGCAGAGGTTGCAGTGAGCCGAGATGGCATGCCACCACAT Direct Gain 0 0.956304327187857 0 0.745459198951721 prediction 0.912608654375714 Functional Gain - SLC25A4 ENSG00000151729 UTR3 Human protein_coding chr4:186069082 chr4:186069082 . . 0 21 hm5C_associated_SNPs_130872 1 0 0 0 0 Cytosol 0 0.500231640909544 0.490918397903442 0.000463281819088834 hm5C_site_50930 DeepMRMD:0.490918397903442;iRNA_m5C:0.000463281819088834 Progressive External Ophthalmoplegia with Mitochondrial DNA Deletions Progressive External Ophthalmoplegia with Mitochondrial DNA Deletions 50931 chr5 140476383 140476383 1 + A G STAD 140476383 - 140476363 140476403 41 CCGGGAGCAGCAGGTAGGGCTGGGAGAAGCCGTCCACCAGG CCGGGAGCAGCAGGTAGGGCCGGGAGAAGCCGTCCACCAGG Direct Gain 0 0.956270678517698 0 0.946313261985779 prediction 0.912541357035396 Functional Gain - PCDHB2 ENSG00000112852 CDS Human protein_coding chr5:140476383 chr5:140476383 nonsynonymous SNV 0.973 1 21 hm5C_associated_SNPs_130873 0 0 0 0 0 exosome 0 0.500231643921092 0.892626523971558 0.000463287842184856 hm5C_site_50931 DeepMRMD:0.892626523971558;iRNA_m5C:0.000463287842184856 50932 chr7 86782073 86782073 1 + T C rs545072108 86782073 + 86782053 86782093 41 TCCGGCCAGGGCCTCCCTCTTAGGGCCGGGCGGTGCCCGTG TCCGGCCAGGGCCTCCCTCTCAGGGCCGGGCGGTGCCCGTG Direct Gain 0 0.956263895623803 0 0.966274976730347 prediction 0.912527791247606 Functional Gain - DMTF1 ENSG00000135164 UTR5 Human protein_coding chr7:86782073 chr7:86782073 . . 0 21 hm5C_associated_SNPs_130874 0 0 1 0 0 Nucleus 0 0.500231655601308 0.932549953460694 0.000463311202615335 hm5C_site_50932 DeepMRMD:0.932549953460694;iRNA_m5C:0.000463311202615335 50933 chr10 118387038 118387038 1 + A G rs9787530 118387038 - 118387018 118387058 41 GCAGGCCACCTGGGCGGGCGTGGCACACGGCCTGCCGCCCG GCAGGCCACCTGGGCGGGCGCGGCACACGGCCTGCCGCCCG Direct Gain 0 0.956253887058927 0 0.886111795902252 prediction 0.912507774117854 Functional Gain - PNLIPRP2 ENSG00000165862 intronic Human other chr10:118387038 chr10:118387038 . . 0 21 hm5C_associated_SNPs_130875 0 0 0 0 0 unknown 0 0.500231643800438 0.772223591804504 0.000463287600875661 hm5C_site_50933 DeepMRMD:0.772223591804504;iRNA_m5C:0.000463287600875661 50934 chr10 85944513 85944513 1 + A G UCEC 85944513 - 85944493 85944533 41 CTTTGGGAGTGCTACACCTGTGGGAGTGCCCCAGGCACCAC CTTTGGGAGTGCTACACCTGCGGGAGTGCCCCAGGCACCAC Direct Gain 0 0.956240205903754 0 0.870180726051331 prediction 0.912480411807508 Functional Gain - C10orf99 ENSG00000188373 CDS Human protein_coding chr10:85944513 chr10:85944513 synonymous SNV . 0 21 hm5C_associated_SNPs_130876 0 0 0 0 0 unknown 0 0.500231643921092 0.740361452102662 0.000463287842184856 hm5C_site_50934 DeepMRMD:0.740361452102662;iRNA_m5C:0.000463287842184856 50935 chr15 76135962 76135962 1 + C G rs552089197 76135962 - 76135942 76135982 41 GCGCGGAAGGGGAGCCGGGCGCGGAAGGGGAGCCGGGCCCG GCGCGGAAGGGGAGCCGGGCCCGGAAGGGGAGCCGGGCCCG Direct Gain 0 0.956231396360575 0 0.711754202842712 prediction 0.912462792721149 Functional Gain - UBE2Q2 ENSG00000140367 UTR5 Human protein_coding chr15:76135962 chr15:76135962 . . 0 21 hm5C_associated_SNPs_130877 0 0 0 0 0 Cytosol 0 0.500231643921092 0.423508405685424 0.000463287842184856 hm5C_site_50935 DeepMRMD:0.423508405685424;iRNA_m5C:0.000463287842184856 50936 chr14 59105233 59105233 1 + G C SKCM 59105233 + 59105213 59105253 41 GCCTGGAGGAGAAGTTCTTGGAGGAGAACATCTTGCTGCTA GCCTGGAGGAGAAGTTCTTGCAGGAGAACATCTTGCTGCTA Direct Gain 0 0.956229481487436 0 0.89531135559082 prediction 0.912458962974873 Functional Gain - DACT1 ENSG00000165617 CDS Human protein_coding chr14:59105233 chr14:59105233 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130878 0 0 0 0 1 exosome 0 0.500231643921092 0.79062271118164 0.000463287842184856 hm5C_site_50936 DeepMRMD:0.79062271118164;iRNA_m5C:0.000463287842184856 50937 chr16 30939147 30939147 1 + G C CESC 30939147 + 30939127 30939167 41 GGAGCGGATGGAAGCTGACAGAGGAGCCACCGCTTCCACCG GGAGCGGATGGAAGCTGACACAGGAGCCACCGCTTCCACCG Direct Gain 0 0.956223006320065 0 0.92123156785965 prediction 0.912446012640129 Functional Gain - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30939147 chr16:30939147 nonsynonymous SNV 0.977 0 21 hm5C_associated_SNPs_130879 0 0 0 0 1 chromatin 0 0.500231643921092 0.8424631357193 0.000463287842184634 hm5C_site_50937 DeepMRMD:0.8424631357193;iRNA_m5C:0.000463287842184634 50938 chr18 76754682 76754682 1 + C G SKCM 76754682 - 76754662 76754702 41 GCCTGCGAGGACGAGGACTCGGACAGGGCGGGGCTGCCCGC GCCTGCGAGGACGAGGACTCCGACAGGGCGGGGCTGCCCGC Direct Gain 0 0.956222927361212 0 0.781588494777679 prediction 0.912445854722425 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76754682 chr18:76754682 synonymous SNV . 0 21 hm5C_associated_SNPs_130880 0 0 0 0 0 exosome 0 0.500231643923293 0.563176989555358 0.000463287846586891 hm5C_site_50938 DeepMRMD:0.563176989555358;iRNA_m5C:0.000463287846586891 50939 chr16 67318791 67318791 1 + A G rs147010402 67318791 - 67318771 67318811 41 CCCAGGCCCAGCGGCACTCCTGGCGGATGGCCTCTGAGCCC CCCAGGCCCAGCGGCACTCCCGGCGGATGGCCTCTGAGCCC Direct Gain 0 0.956208956336624 0 0.909014701843262 prediction 0.912417912673248 Functional Gain - PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67318791 chr16:67318791 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130881 0 0 0 0 0 Cytosol 0 0.500231643921092 0.818029403686524 0.000463287842184856 hm5C_site_50939 DeepMRMD:0.818029403686524;iRNA_m5C:0.000463287842184856 50940 chr9 111625913 111625913 1 + A C rs4978370 111625913 + 111625893 111625933 41 TACAGAAGGTGCTTCTGAACAGCGACGAGGATGGACACTGC TACAGAAGGTGCTTCTGAACCGCGACGAGGATGGACACTGC Direct Gain 0 0.956204862738637 0 0.773524761199951 prediction 0.912409725477273 Functional Gain - ACTL7A ENSG00000187003 UTR3 Human protein_coding chr9:111625913 chr9:111625913 . . 0 21 hm5C_associated_SNPs_130882 0 0 0 0 0 unknown 0 0.500231646199254 0.547049522399902 0.000463292398507731 hm5C_site_50940 DeepMRMD:0.547049522399902;iRNA_m5C:0.000463292398507731 50941 chr19 45754644 45754644 1 + C G rs534322477 45754644 - 45754624 45754664 41 TCCTAGTGGCCCCGTGCAGCGGGGACCCCGGGCGCCATGGG TCCTAGTGGCCCCGTGCAGCCGGGACCCCGGGCGCCATGGG Direct Gain 0 0.956201997268885 0 0.957229256629944 prediction 0.912403994537771 Functional Gain - MARK4 ENSG00000007047 UTR5 Human protein_coding chr19:45754644 chr19:45754644 . . 0 21 hm5C_associated_SNPs_130883 0 0 0 0 0 Nucleus 0 0.500231643920986 0.914458513259888 0.000463287841972582 hm5C_site_50941 DeepMRMD:0.914458513259888;iRNA_m5C:0.000463287841972582 50942 chr12 7045608 7045608 1 + C G BLCA 7045608 - 7045588 7045628 41 GGAAGGGGGAGGCAGAGGAAGAGGAGGAAGAACTGGAAGAG GGAAGGGGGAGGCAGAGGAACAGGAGGAAGAACTGGAAGAG Direct Gain 0 0.956173231458279 0 0.775971651077271 prediction 0.912346462916558 Functional Gain - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7045608 chr12:7045608 nonsynonymous SNV 0.914 1 21 hm5C_associated_SNPs_130884 0 0 1 0 0 Endoplasmic reticulum 0 0.500231643921092 0.551943302154542 0.000463287842184856 hm5C_site_50942 DeepMRMD:0.551943302154542;iRNA_m5C:0.000463287842184856 50943 chr1 55451915 55451915 1 + C G rs138273726 55451915 - 55451895 55451935 41 CCTCAGGCACCGGATACTCCGTGGGTGGGGCCAGCTGGCCA CCTCAGGCACCGGATACTCCCTGGGTGGGGCCAGCTGGCCA Direct Gain 0 0.956162752085616 0 0.24167737364769 prediction 0.912325504171233 Functional Gain - TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55451915 chr1:55451915 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130885 0 0 0 0 0 Cytosol 0 0.500230203568368 0 0.000460407136736452 hm5C_site_50943 DeepMRMD:0;iRNA_m5C:0.000460407136736452 50944 chr20 4680497 4680497 1 + G C LUAD 4680497 + 4680477 4680517 41 AGATGATGGAGCGCGTGGTTGAGCAGATGTGTATCACCCAG AGATGATGGAGCGCGTGGTTCAGCAGATGTGTATCACCCAG Direct Gain 0 0.956137901516318 0 0.719736933708191 prediction 0.912275803032635 Functional Gain - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680497 chr20:4680497 nonsynonymous SNV 0.986 4 21 hm5C_associated_SNPs_130886 1 0 1 0 1 Ribosome 0 0.500231643921092 0.439473867416382 0.000463287842184856 hm5C_site_50944 DeepMRMD:0.439473867416382;iRNA_m5C:0.000463287842184856 Jakob-Creutzfeldt disease Jakob-Creutzfeldt disease 50945 chr1 231344816 231344816 1 + A G UCEC 231344816 - 231344796 231344836 41 GCTCCCAGTAGTGCACGCCCTTGGAGAACGCAGCTGTGCCC GCTCCCAGTAGTGCACGCCCCTGGAGAACGCAGCTGTGCCC Direct Gain 0 0.956113943618666 0 0.851183950901031 prediction 0.912227887237332 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231344816 chr1:231344816 nonsynonymous SNV 0.917 0 21 hm5C_associated_SNPs_130887 0 0 0 0 0 exosome 0 0.500231644124415 0.702367901802062 0.000463288248830906 hm5C_site_50945 DeepMRMD:0.702367901802062;iRNA_m5C:0.000463288248830906 50946 chr1 44070649 44070649 1 + A G LUAD 44070649 - 44070629 44070669 41 TAAAGGGCACAGCTGACTTATAGGAGTCGGGAACCTCCCAG TAAAGGGCACAGCTGACTTACAGGAGTCGGGAACCTCCCAG Direct Gain 0 0.956105214560653 0 0.88665235042572 prediction 0.912210429121306 Functional Gain - PTPRF ENSG00000142949 CDS Human protein_coding chr1:44070649 chr1:44070649 nonsynonymous SNV 0.993 3 21 hm5C_associated_SNPs_130888 0 0 0 0 0 Ribosome 0 0.500231643921088 0.77330470085144 0.00046328784217553 hm5C_site_50946 DeepMRMD:0.77330470085144;iRNA_m5C:0.00046328784217553 50947 chr9 127615735 127615735 1 + C G rs535897619 127615735 - 127615715 127615755 41 CCAGGACTGGGCAGAGGAAAGAGGAAACTGTGTACAGGCGG CCAGGACTGGGCAGAGGAAACAGGAAACTGTGTACAGGCGG Direct Gain 0 0.95609894461824 0 0.879333794116974 prediction 0.912197889236479 Functional Gain - WDR38 ENSG00000136918 upstream Human protein_coding chr9:127615735 chr9:127615735 . . 0 21 hm5C_associated_SNPs_130889 0 0 0 0 0 nucleolus 0 0.500231643921092 0.758667588233948 0.000463287842184856 hm5C_site_50947 DeepMRMD:0.758667588233948;iRNA_m5C:0.000463287842184856 50948 chr16 30770770 30770770 1 + A C rs139907701 30770770 + 30770750 30770790 41 TTTGAAGAGGTCGATGCTGAAAGGAGGCCGCTGTGGTGGTG TTTGAAGAGGTCGATGCTGACAGGAGGCCGCTGTGGTGGTG Direct Gain 0 0.956096995444449 0 0.745873987674713 prediction 0.912193990888899 Functional Gain - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30770770 chr16:30770770 nonsynonymous SNV 0.996 3 21 hm5C_associated_SNPs_130890 0 0 1 0 0 chromatin 0 0.500231643921092 0.491747975349426 0.000463287842184856 hm5C_site_50948 DeepMRMD:0.491747975349426;iRNA_m5C:0.000463287842184856 50949 chr16 57068107 57068107 1 + C G rs3995817 57068107 - 57068087 57068127 41 GCTATGAGGGCCTCCGCATCGTGGACCTGGAGCTGACACTT GCTATGAGGGCCTCCGCATCCTGGACCTGGAGCTGACACTT Direct Gain 0 0.956069645680958 0 0.873633503913879 prediction 0.912139291361916 Functional Gain - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57068107 chr16:57068107 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130891 0 0 0 0 0 Ribosome 0 0.50023127827356 0.747267007827758 0.000462556547119908 hm5C_site_50949 DeepMRMD:0.747267007827758;iRNA_m5C:0.000462556547119908 50950 chr3 195391115 195391115 1 + T C rs28401477 195391115 + 195391095 195391135 41 TCAATATTGCACACCTTATATGGGAGGGTAAGGCTGCCCCC TCAATATTGCACACCTTATACGGGAGGGTAAGGCTGCCCCC Direct Gain 0 0.956069147713798 0 0.921756267547607 prediction 0.912138295427595 Functional Gain - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195391115 chr3:195391115 . . 0 21 hm5C_associated_SNPs_130892 0 0 1 1 0 unknown 0 0.500231643921072 0.843512535095214 0.000463287842143112 hm5C_site_50950 DeepMRMD:0.843512535095214;iRNA_m5C:0.000463287842143112 50951 chr20 2621849 2621849 1 + A G KIRP 2621849 - 2621829 2621869 41 GTGTGGTCCTGCTGGCAGAATTGGAGGTCCCAGGGCCCTGC GTGTGGTCCTGCTGGCAGAACTGGAGGTCCCAGGGCCCTGC Direct Gain 0 0.95605376961769 0 0.738599419593811 prediction 0.912107539235381 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2621849 chr20:2621849 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_130893 0 0 0 0 0 exosome 0 0.500231643921092 0.477198839187622 0.000463287842184856 hm5C_site_50951 DeepMRMD:0.477198839187622;iRNA_m5C:0.000463287842184856 50952 chr7 79764527 79764527 1 + G C SKCM 79764527 + 79764507 79764547 41 GCGGCGGTGGAGCGGAGTAAGATGATCGACCGCAACCTCCG GCGGCGGTGGAGCGGAGTAACATGATCGACCGCAACCTCCG Direct Gain 0 0.956051587610466 0 0.387688875198364 prediction 0.912103175220932 Functional Gain - GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79764527 chr7:79764527 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_130894 0 0 1 0 1 Cytosol 0 0.500233567986747 0 0.000467135973493127 hm5C_site_50952 DeepMRMD:0;iRNA_m5C:0.000467135973493127 50953 chr3 185300589 185300589 1 + T C rs17289918 185300589 + 185300569 185300609 41 AGGACAGCGAAGGCACCAACTGGCAGACAAGTCCCAGGTGG AGGACAGCGAAGGCACCAACCGGCAGACAAGTCCCAGGTGG Direct Gain 0 0.956051517650518 0 0.937732815742493 prediction 0.912103035301036 Functional Gain - LIPH;SENP2 ENSG00000163904 CDS Human protein_coding chr3:185300589 chr3:185300589 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130895 0 0 0 0 1 unknown 0 0.500231636717167 0.875465631484986 0.000463273434334166 hm5C_site_50953 DeepMRMD:0.875465631484986;iRNA_m5C:0.000463273434334166 50954 chr19 1257278 1257278 1 + C G rs200018037 1257278 - 1257258 1257298 41 GGGGCGAGGGTGGCCGATCCGAAGATCCTAAGCCACCACGA GGGGCGAGGGTGGCCGATCCCAAGATCCTAAGCCACCACGA Direct Gain 0 0.95604539229083 0 0.754151225090027 prediction 0.91209078458166 Functional Gain - MIDN ENSG00000167470 UTR3 Human protein_coding chr19:1257278 chr19:1257278 . . 0 21 hm5C_associated_SNPs_130896 0 0 0 0 0 chromatin 0 0.50023164392958 0.508302450180054 0.000463287859160388 hm5C_site_50954 DeepMRMD:0.508302450180054;iRNA_m5C:0.000463287859160388 50955 chr19 49692258 49692258 1 + C G BLCA 49692258 - 49692238 49692278 41 CCCCAGAGCGGGCAGCGACGGAGGAGGAGGCGGGCAGCCCT CCCCAGAGCGGGCAGCGACGCAGGAGGAGGCGGGCAGCCCT Direct Gain 0 0.956034385950454 0 0.859483480453491 prediction 0.912068771900909 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49692258 chr19:49692258 synonymous SNV . 0 21 hm5C_associated_SNPs_130897 0 0 0 0 0 chromatin 0 0.500231643921092 0.718966960906982 0.000463287842184856 hm5C_site_50955 DeepMRMD:0.718966960906982;iRNA_m5C:0.000463287842184856 50956 chr5 128796881 128796881 1 + A C rs536433925 128796881 + 128796861 128796901 41 CGGTGGACCCGGCTGGCGGCAGCGGGGGCAGCGCGGACCCG CGGTGGACCCGGCTGGCGGCCGCGGGGGCAGCGCGGACCCG Direct Gain 0 0.956013805287995 0 0.907600045204163 prediction 0.91202761057599 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128796881 chr5:128796881 nonsynonymous SNV 0.687 1 21 hm5C_associated_SNPs_130898 0 0 0 0 0 exosome 0 0.500231631604927 0.815200090408326 0.000463263209854903 hm5C_site_50956 DeepMRMD:0.815200090408326;iRNA_m5C:0.000463263209854903 50957 chr2 54014459 54014459 1 + A C CESC 54014459 + 54014439 54014479 41 GCCGAGCCCTTCCTCAACTCAGCGATGACATCCCTTTCCGA GCCGAGCCCTTCCTCAACTCCGCGATGACATCCCTTTCCGA Direct Gain 0 0.956009120126797 0 0.851125121116638 prediction 0.912018240253594 Functional Gain - ERLEC1 ENSG00000068912 CDS Human protein_coding chr2:54014459 chr2:54014459 nonsynonymous SNV 0.955 2 21 hm5C_associated_SNPs_130899 0 0 1 0 1 Endoplasmic reticulum 0 0.500231643915323 0.702250242233276 0.000463287830645198 hm5C_site_50957 DeepMRMD:0.702250242233276;iRNA_m5C:0.000463287830645198 50958 chr19 44495749 44495749 1 + T C COAD 44495749 + 44495729 44495769 41 GGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCC GGTCTTCACTGAGGAGGAGCCGGGGCTGCTGGACCCTGCCC Direct Gain 0 0.955996489805685 0 0.935419678688049 prediction 0.911992979611369 Functional Gain - ZNF155 ENSG00000204920 CDS Human protein_coding chr19:44495749 chr19:44495749 nonsynonymous SNV 0.033 3 21 hm5C_associated_SNPs_130900 0 0 0 0 2 cytosol 0 0.500231643921092 0.870839357376098 0.000463287842183524 hm5C_site_50958 DeepMRMD:0.870839357376098;iRNA_m5C:0.000463287842183524 50959 chr17 29249092 29249092 1 + A C rs575831425 29249092 + 29249072 29249112 41 CTGCTGCGGGCGCCGGACACAGGCAACGCGCACTGCGCCGA CTGCTGCGGGCGCCGGACACCGGCAACGCGCACTGCGCCGA Direct Gain 0 0.95597351638867 0 0.852393805980682 prediction 0.911947032777341 Functional Gain - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29249092 chr17:29249092 synonymous SNV . 0 21 hm5C_associated_SNPs_130901 0 0 0 0 1 Ribosome 0 0.500231643921092 0.704787611961364 0.000463287842183524 hm5C_site_50959 DeepMRMD:0.704787611961364;iRNA_m5C:0.000463287842183524 50960 chr7 70885948 70885948 1 + C G LUSC 70885948 - 70885928 70885968 41 TGTTTGATGTTGTCAATGGAGGGGAGGATCACACGCTTCCG TGTTTGATGTTGTCAATGGACGGGAGGATCACACGCTTCCG Direct Gain 0 0.955971951967339 0 0.867709875106812 prediction 0.911943903934678 Functional Gain - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:70885948 chr7:70885948 synonymous SNV . 0 21 hm5C_associated_SNPs_130902 0 0 0 0 0 unknown 0 0.500231631756494 0.735419750213624 0.000463263512988865 hm5C_site_50960 DeepMRMD:0.735419750213624;iRNA_m5C:0.000463263512988865 50961 chr19 42880504 42880504 1 + A G SKCM 42880504 - 42880484 42880524 41 GCCGGGGCAGTAGGGTCAGGTGGGAAGCAGACGGTGACCTT GCCGGGGCAGTAGGGTCAGGCGGGAAGCAGACGGTGACCTT Direct Gain 0 0.955953761279384 0 0.907188057899475 prediction 0.911907522558768 Functional Gain - MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42880504 chr19:42880504 synonymous SNV . 0 21 hm5C_associated_SNPs_130903 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.81437611579895 0.000463287842184856 hm5C_site_50961 DeepMRMD:0.81437611579895;iRNA_m5C:0.000463287842184856 50962 chr3 138091747 138091747 1 + A G rs547745521 138091747 - 138091727 138091767 41 GTATGTGGGGAGGTTGTCACTGGGGACGGCGCTGGTTGCCA GTATGTGGGGAGGTTGTCACCGGGGACGGCGCTGGTTGCCA Direct Gain 0 0.95595364454499 0 0.973257780075073 prediction 0.91190728908998 Functional Gain - MRAS ENSG00000158186 CDS Human protein_coding chr3:138091747 chr3:138091747 nonsynonymous SNV 0.960 1 21 hm5C_associated_SNPs_130904 0 0 0 0 0 Cytosol 0 0.500231650929441 0.946515560150146 0.000463301858882437 hm5C_site_50962 DeepMRMD:0.946515560150146;iRNA_m5C:0.000463301858882437 50963 chr1 207286412 207286412 1 + A C BLCA 207286412 + 207286392 207286432 41 TCTGGGGCTCTTCATAGAAAAAGGAAAATGGCAGCCTGGCC TCTGGGGCTCTTCATAGAAACAGGAAAATGGCAGCCTGGCC Direct Gain 0 0.955946350709969 0 0.775037288665771 prediction 0.911892701419939 Functional Gain - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207286412 chr1:207286412 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130905 0 0 0 0 1 Endoplasmic reticulum 0 0.500231643921093 0.550074577331542 0.000463287842186411 hm5C_site_50963 DeepMRMD:0.550074577331542;iRNA_m5C:0.000463287842186411 50964 chr8 145065693 145065693 1 + A G COAD 145065693 - 145065673 145065713 41 GGCTCTGGGGATATGGCCCCTGGGGGTAGCCCCCTTGGGGG GGCTCTGGGGATATGGCCCCCGGGGGTAGCCCCCTTGGGGG Direct Gain 0 0.955943978360795 0 0.96440577507019 prediction 0.91188795672159 Functional Gain - GRINA ENSG00000178719 CDS Human protein_coding chr8:145065693 chr8:145065693 nonsynonymous SNV 0.893 0 21 hm5C_associated_SNPs_130906 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.92881155014038 0.000463287842184856 hm5C_site_50964 DeepMRMD:0.92881155014038;iRNA_m5C:0.000463287842184856 50965 chr8 55533945 55533945 1 + A G rs147736171 55533945 - 55533925 55533965 41 GAGCAGCGACGGCTACGGGGTGGGGCGGTGAGTGCGCGCTA GAGCAGCGACGGCTACGGGGCGGGGCGGTGAGTGCGCGCTA Direct Gain 0 0.955932562312732 0 0.732396125793457 prediction 0.911865124625464 Functional Gain - RP1 ENSG00000104237 CDS Human protein_coding chr8:55533945 chr8:55533945 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130907 0 0 0 0 0 exosome 0 0.500231643863136 0.464792251586914 0.000463287726272688 hm5C_site_50965 DeepMRMD:0.464792251586914;iRNA_m5C:0.000463287726272688 50966 chr11 124746180 124746180 1 + C G rs55706177 124746180 - 124746160 124746200 41 CCAGCCCGGGCTCCAGGTCCGGCGGGGACGCTGTGGGGGTC CCAGCCCGGGCTCCAGGTCCCGCGGGGACGCTGTGGGGGTC Direct Gain 0 0.955925485564871 0 0.685669720172882 prediction 0.911850971129742 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124746180 chr11:124746180 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_130908 0 0 0 0 0 exosome 0 0.500231643921092 0.371339440345764 0.000463287842184856 hm5C_site_50966 DeepMRMD:0.371339440345764;iRNA_m5C:0.000463287842184856 50967 chr2 27558466 27558466 1 + T C ESCA 27558466 + 27558446 27558486 41 TCCTTGCTGTGCTACTCACCTGGGGGTTGCTGAGCCAGCAG TCCTTGCTGTGCTACTCACCCGGGGGTTGCTGAGCCAGCAG Direct Gain 0 0.955898686081201 0 0.954655230045319 prediction 0.911797372162403 Functional Gain - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27558466 chr2:27558466 synonymous SNV . 0 21 hm5C_associated_SNPs_130909 0 0 0 0 0 Cytosol 0 0.500231643922461 0.909310460090638 0.000463287844922444 hm5C_site_50967 DeepMRMD:0.909310460090638;iRNA_m5C:0.000463287844922444 50968 chr6 30615296 30615296 1 + A G UCEC 30615296 - 30615276 30615316 41 CGCCTGACCGCCCTCAAACCTGGGAGGACCGACGTCCTTGC CGCCTGACCGCCCTCAAACCCGGGAGGACCGACGTCCTTGC Direct Gain 0 0.95588743826054 0 0.94493305683136 prediction 0.91177487652108 Functional Gain - C6orf136 ENSG00000204564 CDS Human protein_coding chr6:30615296 chr6:30615296 synonymous SNV . 0 21 hm5C_associated_SNPs_130910 0 0 0 0 0 Cytosol 0 0.500231641826391 0.88986611366272 0.00046328365278292 hm5C_site_50968 DeepMRMD:0.88986611366272;iRNA_m5C:0.00046328365278292 50969 chr3 13547169 13547169 1 + G C rs560815051 13547169 + 13547149 13547189 41 GTTCCTGGAGAGAGGGCAGCGAGGATCTCTATCCTGGCCTG GTTCCTGGAGAGAGGGCAGCCAGGATCTCTATCCTGGCCTG Direct Gain 0 0.955882915436346 0 0.816800117492676 prediction 0.911765830872692 Functional Gain - HDAC11 ENSG00000163517 UTR3 Human protein_coding chr3:13547169 chr3:13547169 . . 0 21 hm5C_associated_SNPs_130911 0 0 1 0 0 Cytosol 0 0.500231643921092 0.633600234985352 0.000463287842184856 hm5C_site_50969 DeepMRMD:0.633600234985352;iRNA_m5C:0.000463287842184856 50970 chr3 49699342 49699342 1 + C G HNSC 49699342 - 49699322 49699362 41 TCCGGTGCTTGCTGCGCTTTGAGGAGATGGCAGCTGGAGCC TCCGGTGCTTGCTGCGCTTTCAGGAGATGGCAGCTGGAGCC Direct Gain 0 0.955878394662109 0 0.915771842002869 prediction 0.911756789324218 Functional Gain - BSN ENSG00000164061 CDS Human protein_coding chr3:49699342 chr3:49699342 stopgain 1.000 1 21 hm5C_associated_SNPs_130912 0 0 0 0 0 chromatin 0 0.500231643920876 0.831543684005738 0.000463287841752758 hm5C_site_50970 DeepMRMD:0.831543684005738;iRNA_m5C:0.000463287841752758 50971 chr13 45915481 45915481 1 + A C rs12872310 45915481 + 45915461 45915501 41 GGTGAGCATCCGGGGACTTGAGGCGGAGACACAAGGCTCCG GGTGAGCATCCGGGGACTTGCGGCGGAGACACAAGGCTCCG Direct Gain 0 0.955867495488289 0 0.926740169525146 prediction 0.911734990976578 Functional Gain - TPT1-AS1 ENSG00000170919 ncRNA_exonic Human processed_transcript chr13:45915481 chr13:45915481 . . 0 21 hm5C_associated_SNPs_130913 0 0 0 0 1 unknown 0 0.500231643840383 0.853480339050292 0.000463287680766644 hm5C_site_50971 DeepMRMD:0.853480339050292;iRNA_m5C:0.000463287680766644 50972 chr15 45694983 45694983 1 + G C rs1153850 45694983 + 45694963 45695003 41 GTGGCCGGTGTTGCGAGAGCGGGCAGGCGCGCCCGGTGCCC GTGGCCGGTGTTGCGAGAGCCGGCAGGCGCGCCCGGTGCCC Direct Gain 0 0.955866315705396 0 0.916420459747314 prediction 0.911732631410792 Functional Gain - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45694983 chr15:45694983 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_130914 0 0 0 0 0 chromatin 0 0.500231643921007 0.832840919494628 0.000463287842014326 hm5C_site_50972 DeepMRMD:0.832840919494628;iRNA_m5C:0.000463287842014326 50973 chr19 6833256 6833256 1 + G C LUSC 6833256 + 6833236 6833276 41 ACTTCCAGATGTTCTCCTTTGAGGAGACCACATCCTGCAAG ACTTCCAGATGTTCTCCTTTCAGGAGACCACATCCTGCAAG Direct Gain 0 0.955858463942821 0 0.934929549694061 prediction 0.911716927885643 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833256 chr19:6833256 nonsynonymous SNV 0.994 2 21 hm5C_associated_SNPs_130915 0 0 0 0 2 Endoplasmic reticulum 0 0.500231859227377 0.869859099388122 0.000463718454754236 hm5C_site_50973 DeepMRMD:0.869859099388122;iRNA_m5C:0.000463718454754236 50974 chrX 47062169 47062169 1 + A G KICH 47062169 - 47062149 47062189 41 GCCCCCAATGAAGGCGTTTATGGGTGCCAGATCCCCAGCAG GCCCCCAATGAAGGCGTTTACGGGTGCCAGATCCCCAGCAG Direct Gain 0 0.955855205178377 0 0.863456130027771 prediction 0.911710410356753 Functional Gain - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47062169 chrX:47062169 nonsynonymous SNV 0.986 1 21 hm5C_associated_SNPs_130916 0 0 0 0 0 Nucleus 0 0.500231643921092 0.726912260055542 0.000463287842184856 hm5C_site_50974 DeepMRMD:0.726912260055542;iRNA_m5C:0.000463287842184856 50975 chr7 100275110 100275110 1 + C G rs78530908 100275110 - 100275090 100275130 41 TGGCGTGGACCTGCGGAGCAGGGGAAGCGCCGGGGTCAGAG TGGCGTGGACCTGCGGAGCACGGGAAGCGCCGGGGTCAGAG Direct Gain 0 0.955851181511991 0 0.876641392707825 prediction 0.911702363023982 Functional Gain - GNB2 ENSG00000172354 intronic Human protein_coding chr7:100275110 chr7:100275110 . . 0 21 hm5C_associated_SNPs_130917 0 0 0 0 0 Cytosol 0 0.500231643971319 0.75328278541565 0.000463287942637836 hm5C_site_50975 DeepMRMD:0.75328278541565;iRNA_m5C:0.000463287942637836 50976 chr12 45609825 45609825 1 + G C rs192039522 45609825 + 45609805 45609845 41 TCTGCGCGCCTCGTAAAACCGGGGAAGTTCAATCATTCCGC TCTGCGCGCCTCGTAAAACCCGGGAAGTTCAATCATTCCGC Direct Gain 0 0.955850723308397 0 0.923306465148926 prediction 0.911701446616794 Functional Gain - ANO6 ENSG00000177119 UTR5 Human protein_coding chr12:45609825 chr12:45609825 . . 0 21 hm5C_associated_SNPs_130918 0 0 0 0 0 Ribosome 0 0.500231643921089 0.846612930297852 0.000463287842178861 hm5C_site_50976 DeepMRMD:0.846612930297852;iRNA_m5C:0.000463287842178861 50977 chr13 46287758 46287758 1 + T C LUAD 46287758 + 46287738 46287778 41 ACAAGATCCTACAGGTCTTCTGGGAGGAGCACAAGGCCTCG ACAAGATCCTACAGGTCTTCCGGGAGGAGCACAAGGCCTCG Direct Gain 0 0.955846614042074 0 0.884983897209167 prediction 0.911693228084148 Functional Gain - SPERT ENSG00000174015 CDS Human protein_coding chr13:46287758 chr13:46287758 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_130919 0 0 0 0 0 exosome 0 0.500231643921093 0.769967794418334 0.0004632878421853 hm5C_site_50977 DeepMRMD:0.769967794418334;iRNA_m5C:0.0004632878421853 50978 chr2 232236439 232236439 1 + A G rs58092703 232236439 - 232236419 232236459 41 CCTCCTTGGTGGCTCTGCCCTGGGAGAAAGTGACCCGGCTG CCTCCTTGGTGGCTCTGCCCCGGGAGAAAGTGACCCGGCTG Direct Gain 0 0.95583782657201 0 0.956513285636902 prediction 0.91167565314402 Functional Gain - ARMC9 ENSG00000263641;ENSG00000224376 intergenic Human other chr2:232236439 chr2:232236439 . . 0 21 hm5C_associated_SNPs_130920 0 0 0 0 0 membrane 0 0.500231643921092 0.913026571273804 0.000463287842184856 hm5C_site_50978 DeepMRMD:0.913026571273804;iRNA_m5C:0.000463287842184856 50979 chr1 9327387 9327387 1 + T G rs1294015 9327387 - 9327367 9327407 41 GGCACAGGGGCTGCGGGGATAGGGGCAGTCAGGAGGCGGCA GGCACAGGGGCTGCGGGGATCGGGGCAGTCAGGAGGCGGCA Direct Gain 0 0.955817154736462 0 0.929894208908081 prediction 0.911634309472924 Functional Gain - H6PD ENSG00000049239 UTR3 Human protein_coding chr1:9327387 chr1:9327387 . . 0 21 hm5C_associated_SNPs_130921 0 0 0 0 0 Ribosome 0 0.500231643921092 0.859788417816162 0.000463287842184856 hm5C_site_50979 DeepMRMD:0.859788417816162;iRNA_m5C:0.000463287842184856 50980 chr11 20409598 20409598 1 + T C UCEC 20409598 + 20409578 20409618 41 TGTGGAGAATGAGGAGGACCTGCCAGAACTGTCGGACAGCG TGTGGAGAATGAGGAGGACCCGCCAGAACTGTCGGACAGCG Direct Gain 0 0.955801563020124 0 0.494216501712799 prediction 0.911603126040249 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20409598 chr11:20409598 nonsynonymous SNV 0.876 0 21 hm5C_associated_SNPs_130922 0 0 1 0 1 Ribosome 0 0.500231643921002 0 0.000463287842003668 hm5C_site_50980 DeepMRMD:0;iRNA_m5C:0.000463287842003668 50981 chr18 7567803 7567803 1 + C G rs67536179 7567803 - 7567783 7567823 41 CCCTCATGGTGCTGAGTGCGGGCCGGGCCGCTCCCCGGCGG CCCTCATGGTGCTGAGTGCGCGCCGGGCCGCTCCCCGGCGG Direct Gain 0 0.955796451315634 0 0.528054654598236 prediction 0.911592902631269 Functional Gain - PTPRM ENSG00000173482 UTR5 Human protein_coding chr18:7567803 chr18:7567803 . . 0 21 hm5C_associated_SNPs_130923 0 0 0 0 0 Nucleus 0 0.500231643928774 0.0561093091964719 0.000463287857548567 hm5C_site_50981 DeepMRMD:0.0561093091964719;iRNA_m5C:0.000463287857548567 50982 chr20 47853046 47853046 1 + A G rs144893277 47853046 - 47853026 47853066 41 CACAGGGGTGCCTGCTCACCTTGGGGAAGTATCCTGGCCTT CACAGGGGTGCCTGCTCACCCTGGGGAAGTATCCTGGCCTT Direct Gain 0 0.955785397565591 0 0.742260098457336 prediction 0.911570795131182 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47853046 chr20:47853046 synonymous SNV . 0 21 hm5C_associated_SNPs_130924 0 0 0 0 0 chromatin 0 0.500231643921092 0.484520196914672 0.000463287842184856 hm5C_site_50982 DeepMRMD:0.484520196914672;iRNA_m5C:0.000463287842184856 50983 chr17 14110345 14110345 1 + A G UCEC 14110345 - 14110325 14110365 41 ATTGATGGGAAGGGCCATGATGGGGAAGGTCCATGTGGTGA ATTGATGGGAAGGGCCATGACGGGGAAGGTCCATGTGGTGA Direct Gain 0 0.955777415089807 0 0.786590218544006 prediction 0.911554830179615 Functional Gain - COX10 ENSG00000006695 CDS Human protein_coding chr17:14110345 chr17:14110345 nonsynonymous SNV 0.032 1 21 hm5C_associated_SNPs_130925 0 0 0 0 0 Cytosol 0 0.500231643921092 0.573180437088012 0.000463287842184412 hm5C_site_50983 DeepMRMD:0.573180437088012;iRNA_m5C:0.000463287842184412 50984 chr3 195451995 195451995 1 + C G HNSC 195451995 - 195451975 195452015 41 CGGAAGAGGCGCTGCTCTCTGAGGACAGGCCCTTAGCTTCT CGGAAGAGGCGCTGCTCTCTCAGGACAGGCCCTTAGCTTCT Direct Gain 0 0.955757470027128 0 0.950340807437897 prediction 0.911514940054257 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195451995 chr3:195451995 stopgain 0.010 0 21 hm5C_associated_SNPs_130926 0 0 0 0 0 Nucleus 0 0.500231643862383 0.900681614875794 0.000463287724766781 hm5C_site_50984 DeepMRMD:0.900681614875794;iRNA_m5C:0.000463287724766781 50985 chr4 75858309 75858309 1 + G C rs537582773 75858309 + 75858289 75858329 41 CGGAGGCGGCCCCGGGCTCGGGCGGCTGGGATGGAGCAGAA CGGAGGCGGCCCCGGGCTCGCGCGGCTGGGATGGAGCAGAA Direct Gain 0 0.955733587574701 0 0.737924635410309 prediction 0.911467175149402 Functional Gain - PARM1 ENSG00000169116 UTR5 Human protein_coding chr4:75858309 chr4:75858309 . . 0 21 hm5C_associated_SNPs_130927 0 0 0 0 0 exosome 0 0.50023155702596 0.475849270820618 0.000463114051920455 hm5C_site_50985 DeepMRMD:0.475849270820618;iRNA_m5C:0.000463114051920455 50986 chr7 143078697 143078697 1 + C G LUSC 143078697 - 143078677 143078717 41 GCCGGAGCCGAGACCGAAACGGAGATCGCGGGAGACGGGCG GCCGGAGCCGAGACCGAAACCGAGATCGCGGGAGACGGGCG Direct Gain 0 0.955714654561568 0 0.899936199188232 prediction 0.911429309123135 Functional Gain - ZYX ENSG00000159840 CDS Human protein_coding chr7:143078697 chr7:143078697 synonymous SNV . 0 21 hm5C_associated_SNPs_130928 0 0 0 0 0 Ribosome 0 0.500231659411999 0.799872398376464 0.000463318823998637 hm5C_site_50986 DeepMRMD:0.799872398376464;iRNA_m5C:0.000463318823998637 50987 chr1 167667012 167667012 1 + A G rs34699420 167667012 - 167666992 167667032 41 CCAGCTGGGCAGGGCCGGTCTGGGGGCTGCAGCCTGGCTCG CCAGCTGGGCAGGGCCGGTCCGGGGGCTGCAGCCTGGCTCG Direct Gain 0 0.955703757096328 0 0.907849133014679 prediction 0.911407514192655 Functional Gain - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167667012 chr1:167667012 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130929 0 0 0 0 0 chromatin 0 0.500231643921092 0.815698266029358 0.000463287842184856 hm5C_site_50987 DeepMRMD:0.815698266029358;iRNA_m5C:0.000463287842184856 50988 chr15 22743191 22743191 1 + A C COAD 22743191 + 22743171 22743211 41 GGAGGCAGGAGGAGAAGATAAGGGAGCAGGAGGAGAAGATA GGAGGCAGGAGGAGAAGATACGGGAGCAGGAGGAGAAGATA Direct Gain 0 0.955697482214725 0 0.784392774105072 prediction 0.91139496442945 Functional Gain - GOLGA6L1;GOLGA6L22 ENSG00000197414 CDS Human other chr15:22743191 chr15:22743191 synonymous SNV . 0 21 hm5C_associated_SNPs_130930 0 0 0 0 0 unknown 0 0.500231643921092 0.568785548210144 0.000463287842184856 hm5C_site_50988 DeepMRMD:0.568785548210144;iRNA_m5C:0.000463287842184856 50989 chr3 134204841 134204841 1 + C G rs2370576 134204841 - 134204821 134204861 41 ACACGTGATGCGGGGGAGGGGGGGGGGGCGTGGCAGGAGCA ACACGTGATGCGGGGGAGGGCGGGGGGGCGTGGCAGGAGCA Direct Gain 0 0.955623675215794 0 0.930010676383972 prediction 0.911247350431588 Functional Gain - ANAPC13;CEP63 ENSG00000129055;ENSG00000182923 UTR5 Human other chr3:134204841 chr3:134204841 . . 0 21 hm5C_associated_SNPs_130931 0 0 0 0 1 unknown 0 0.500231643921092 0.860021352767944 0.000463287842184856 hm5C_site_50989 DeepMRMD:0.860021352767944;iRNA_m5C:0.000463287842184856 50990 chr1 152659494 152659494 1 + A G STAD 152659494 - 152659474 152659514 41 GTTGCAGCAGCCCCCAGAGCTGGGACCACAGCAGCCCCCAG GTTGCAGCAGCCCCCAGAGCCGGGACCACAGCAGCCCCCAG Direct Gain 0 0.955621989550072 0 0.948552131652832 prediction 0.911243979100144 Functional Gain - LCE2B ENSG00000159455 CDS Human protein_coding chr1:152659494 chr1:152659494 nonsynonymous SNV 0.579 1 21 hm5C_associated_SNPs_130932 0 0 0 0 0 unknown 0 0.500231644107101 0.897104263305664 0.000463288214201274 hm5C_site_50990 DeepMRMD:0.897104263305664;iRNA_m5C:0.000463288214201274 50991 chr17 34431961 34431961 1 + T C rs1719146 34431961 + 34431941 34431981 41 GCCTGCTGCTTTTCTTACACTGCGAGGAAGCTTCCTCGCAA GCCTGCTGCTTTTCTTACACCGCGAGGAAGCTTCCTCGCAA Direct Gain 0 0.955611319959281 0 0.802628755569458 prediction 0.911222639918561 Functional Gain - CCL4 ENSG00000129277 CDS Human other chr17:34431961 chr17:34431961 synonymous SNV . 0 21 hm5C_associated_SNPs_130933 0 0 0 0 2 exosome 0 0.500231643907329 0.605257511138916 0.000463287814657543 hm5C_site_50991 DeepMRMD:0.605257511138916;iRNA_m5C:0.000463287814657543 50992 chr6 28227197 28227197 1 + T C LIHC 28227197 + 28227177 28227217 41 TCCGAGGACATCGTGGGCTCTCGGAGAAGGCGACGCAGCTC TCCGAGGACATCGTGGGCTCCCGGAGAAGGCGACGCAGCTC Direct Gain 0 0.955605247468216 0 0.717970728874207 prediction 0.911210494936432 Functional Gain - NKAPL ENSG00000189134 CDS Human protein_coding chr6:28227197 chr6:28227197 synonymous SNV . 0 21 hm5C_associated_SNPs_130934 0 0 0 0 0 exosome 0 0.500211266265063 0.435941457748414 0.000422532530126807 hm5C_site_50992 DeepMRMD:0.435941457748414;iRNA_m5C:0.000422532530126807 50993 chr1 31907016 31907016 1 + A G rs142045487 31907016 - 31906996 31907036 41 TCGCGGTTGCGCAGGAGGAGTGGGGCTACCAGGGTCCACAG TCGCGGTTGCGCAGGAGGAGCGGGGCTACCAGGGTCCACAG Direct Gain 0 0.955596190738828 0 0.852497696876526 prediction 0.911192381477657 Functional Gain - SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31907016 chr1:31907016 synonymous SNV . 0 21 hm5C_associated_SNPs_130935 0 0 0 0 0 Endoplasmic reticulum 0 0.50022799271612 0.704995393753052 0.000455985432239236 hm5C_site_50993 DeepMRMD:0.704995393753052;iRNA_m5C:0.000455985432239236 50994 chr9 140002885 140002885 1 + C G BLCA 140002885 - 140002865 140002905 41 GTCCCTAGGCTCGGGCTTCTGAGGATCCTGGACATTGTTGA GTCCCTAGGCTCGGGCTTCTCAGGATCCTGGACATTGTTGA Direct Gain 0 0.955576875123136 0 0.925112724304199 prediction 0.911153750246272 Functional Gain - MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:140002885 chr9:140002885 nonsynonymous SNV 0.066 0 21 hm5C_associated_SNPs_130936 0 0 0 0 0 Ribosome 0 0.500231643921091 0.850225448608398 0.000463287842182414 hm5C_site_50994 DeepMRMD:0.850225448608398;iRNA_m5C:0.000463287842182414 50995 chr7 7646687 7646687 1 + A C rs4222 7646687 + 7646667 7646707 41 TGTATGCAGTTGGATACAACAGGGAATCTGGTACCTGCAGA TGTATGCAGTTGGATACAACCGGGAATCTGGTACCTGCAGA Direct Gain 0 0.955556543967482 0 0.862594604492188 prediction 0.911113087934964 Functional Gain - MIOS ENSG00000164654 CDS Human protein_coding chr7:7646687 chr7:7646687 synonymous SNV . 0 21 hm5C_associated_SNPs_130937 0 0 0 0 1 Nucleus 0 0.500231643921156 0.725189208984376 0.000463287842312754 hm5C_site_50995 DeepMRMD:0.725189208984376;iRNA_m5C:0.000463287842312754 50996 chr9 126774585 126774585 1 + C G rs563485024 126774585 - 126774565 126774605 41 GGGGCGCGGCTCCTCCGAGGGAGGGCTTGCCCCCCGCCTCA GGGGCGCGGCTCCTCCGAGGCAGGGCTTGCCCCCCGCCTCA Direct Gain 0 0.955517397114732 0 0.920692265033722 prediction 0.911034794229464 Functional Gain - LHX2 ENSG00000106689 UTR5 Human protein_coding chr9:126774585 chr9:126774585 . . 0 21 hm5C_associated_SNPs_130938 0 0 0 0 0 Cytosol 0 0.500231643921092 0.841384530067444 0.000463287842184634 hm5C_site_50996 DeepMRMD:0.841384530067444;iRNA_m5C:0.000463287842184634 50997 chr17 40997568 40997568 1 + C G HNSC 40997568 - 40997548 40997588 41 GGAACCCTGGGGCGAGAACTGAAGAGGGGGAAGAGGACCTG GGAACCCTGGGGCGAGAACTCAAGAGGGGGAAGAGGACCTG Direct Gain 0 0.955469200147186 0 0.947196125984192 prediction 0.910938400294371 Functional Gain - AOC2 ENSG00000131480 CDS Human protein_coding chr17:40997568 chr17:40997568 nonsynonymous SNV 0.448 0 21 hm5C_associated_SNPs_130939 0 0 0 0 0 exosome 0 0.500231643921092 0.894392251968384 0.000463287842184856 hm5C_site_50997 DeepMRMD:0.894392251968384;iRNA_m5C:0.000463287842184856 50998 chr7 55433521 55433521 1 + C G rs182929996 55433521 - 55433501 55433541 41 GCACATCAGGCGGCCGCAGAGGCGGTGGGCGCTGTGCCTCT GCACATCAGGCGGCCGCAGACGCGGTGGGCGCTGTGCCTCT Direct Gain 0 0.955427823295057 0 0.929194688796997 prediction 0.910855646590114 Functional Gain - LANCL2 ENSG00000132434 UTR5 Human protein_coding chr7:55433521 chr7:55433521 . . 0 21 hm5C_associated_SNPs_130940 0 0 0 0 0 Ribosome 0 0.500231613283814 0.858389377593994 0.000463226567628094 hm5C_site_50998 DeepMRMD:0.858389377593994;iRNA_m5C:0.000463226567628094 50999 chr10 104263878 104263878 1 + C G rs543373848 104263878 - 104263858 104263898 41 GGGCAGGCACTGGGGGAACTGGAGAGGGCAAACGACGGGGA GGGCAGGCACTGGGGGAACTCGAGAGGGCAAACGACGGGGA Direct Gain 0 0.955416980525586 0 0.866932153701782 prediction 0.910833961051171 Functional Gain - SUFU ENSG00000107882 UTR5 Human protein_coding chr10:104263878 chr10:104263878 . . 0 21 hm5C_associated_SNPs_130941 0 0 0 0 0 chromatin 0 0.500231643921092 0.733864307403564 0.000463287842184634 hm5C_site_50999 DeepMRMD:0.733864307403564;iRNA_m5C:0.000463287842184634 51000 chr9 126129508 126129508 1 + A G LIHC 126129508 - 126129488 126129528 41 GCAGGCATCGGCCCCCATGCTGGCAGGGGCTCGATGCACAC GCAGGCATCGGCCCCCATGCCGGCAGGGGCTCGATGCACAC Direct Gain 0 0.955412645532228 0 0.793919503688812 prediction 0.910825291064456 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126129508 chr9:126129508 nonsynonymous SNV 0.396 1 21 hm5C_associated_SNPs_130942 0 0 0 0 0 exosome 0 0.499424512716526 0.587839007377624 0 hm5C_site_51000 DeepMRMD:0.587839007377624;iRNA_m5C:0 51001 chr22 38087287 38087287 1 + A G COAD 38087287 - 38087267 38087307 41 GCGGCGCTGGGCCTTGCTGGTACGAGGGGCCCTTGGGGGCT GCGGCGCTGGGCCTTGCTGGCACGAGGGGCCCTTGGGGGCT Direct Gain 0 0.955409034705937 0 0.787657141685486 prediction 0.910818069411875 Functional Gain - NOL12 ENSG00000100101 CDS Human protein_coding chr22:38087287 chr22:38087287 nonsynonymous SNV 0.735 5 21 hm5C_associated_SNPs_130943 0 0 0 0 0 Cytosol 0 0.500231643921093 0.575314283370972 0.000463287842185078 hm5C_site_51001 DeepMRMD:0.575314283370972;iRNA_m5C:0.000463287842185078 51002 chr15 90170920 90170920 1 + A C rs76530445 90170920 + 90170900 90170940 41 TCTGGAGCAGCCACATTTTCAAGGACTGTCCAAGAGCCAGC TCTGGAGCAGCCACATTTTCCAGGACTGTCCAAGAGCCAGC Direct Gain 0 0.955302831773875 0 0.790501117706299 prediction 0.91060566354775 Functional Gain - TICRR ENSG00000140534 UTR3 Human protein_coding chr15:90170920 chr15:90170920 . . 0 21 hm5C_associated_SNPs_130944 0 0 1 1 0 chromatin 0 0.500231643923257 0.581002235412598 0.000463287846514282 hm5C_site_51002 DeepMRMD:0.581002235412598;iRNA_m5C:0.000463287846514282 51003 chr6 31599378 31599378 1 + C G SARC 31599378 - 31599358 31599398 41 GGGTCTGGCTTTGGGGGTTTGGGGGTTTCATCCCCCTGTTC GGGTCTGGCTTTGGGGGTTTCGGGGTTTCATCCCCCTGTTC Direct Gain 0 0.955246639299185 0 0.916789948940277 prediction 0.91049327859837 Functional Gain - PRRC2A ENSG00000204469 CDS Human protein_coding chr6:31599378 chr6:31599378 synonymous SNV . 0 21 hm5C_associated_SNPs_130945 0 0 0 0 0 Ribosome 0 0.500231643921092 0.833579897880554 0.000463287842184856 hm5C_site_51003 DeepMRMD:0.833579897880554;iRNA_m5C:0.000463287842184856 51004 chr7 139030773 139030773 1 + T C rs6968958 139030773 + 139030753 139030793 41 GCAGGCGGATCACCTGAGGTTGGGAGTTCGCGACCAGCCTG GCAGGCGGATCACCTGAGGTCGGGAGTTCGCGACCAGCCTG Direct Gain 0 0.955236925455141 0 0.923938870429993 prediction 0.910473850910283 Functional Gain - FMC1 ENSG00000164898 UTR3 Human protein_coding chr7:139030773 chr7:139030773 . . 0 21 hm5C_associated_SNPs_130946 0 0 0 0 0 unknown 0 0.500231643919668 0.847877740859986 0.000463287839336024 hm5C_site_51004 DeepMRMD:0.847877740859986;iRNA_m5C:0.000463287839336024 51005 chr18 59222048 59222048 1 + G C rs143524669 59222048 + 59222028 59222068 41 AGTGAGAATGGGGGTGAGCAGGCGAACAGAGCTCTCTCTGG AGTGAGAATGGGGGTGAGCACGCGAACAGAGCTCTCTCTGG Direct Gain 0 0.955203708850187 0 0.959732055664062 prediction 0.910407417700374 Functional Gain - CDH20 ENSG00000101542 UTR3 Human protein_coding chr18:59222048 chr18:59222048 . . 0 21 hm5C_associated_SNPs_130947 0 0 0 0 0 nucleus 0 0.500231647932411 0.919464111328124 0.000463295864821633 hm5C_site_51005 DeepMRMD:0.919464111328124;iRNA_m5C:0.000463295864821633 51006 chr22 31500496 31500496 1 + A G rs557184819 31500496 - 31500476 31500516 41 AGGAGACGGTGCCCGGAGAGTGGGGGCGGCAGCTTGCCACT AGGAGACGGTGCCCGGAGAGCGGGGGCGGCAGCTTGCCACT Direct Gain 0 0.955203325629437 0 0.968063414096832 prediction 0.910406651258873 Functional Gain - SMTN ENSG00000183963 UTR3 Human protein_coding chr22:31500496 chr22:31500496 . . 0 21 hm5C_associated_SNPs_130948 0 0 0 0 0 Cytosol 0 0.500231643892733 0.936126828193664 0.000463287785466004 hm5C_site_51006 DeepMRMD:0.936126828193664;iRNA_m5C:0.000463287785466004 51007 chr4 8229713 8229713 1 + A G rs1281148 8229713 - 8229693 8229733 41 TGCCTGAGGTAGTGGGAAGTTTGGGCAGGGAGGCTGTGGGG TGCCTGAGGTAGTGGGAAGTCTGGGCAGGGAGGCTGTGGGG Direct Gain 0 0.955189943058991 0 0.820640206336975 prediction 0.910379886117981 Functional Gain - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8229713 chr4:8229713 synonymous SNV . 0 21 hm5C_associated_SNPs_130949 0 0 0 0 0 cytosol 0 0.500231643921093 0.64128041267395 0.0004632878421853 hm5C_site_51007 DeepMRMD:0.64128041267395;iRNA_m5C:0.0004632878421853 51008 chrX 11133059 11133059 1 + A C COAD 11133059 + 11133039 11133079 41 AGTACGTGGAGTGTCCCATTAGGGGCACTGCGGCTGAGAAT AGTACGTGGAGTGTCCCATTCGGGGCACTGCGGCTGAGAAT Direct Gain 0 0.955177181072281 0 0.952654480934143 prediction 0.910354362144562 Functional Gain - HCCS ENSG00000004961 CDS Human protein_coding chrX:11133059 chrX:11133059 synonymous SNV . 0 21 hm5C_associated_SNPs_130950 0 0 1 0 1 Cytosol 0 0.500231643921092 0.905308961868286 0.000463287842184856 hm5C_site_51008 DeepMRMD:0.905308961868286;iRNA_m5C:0.000463287842184856 51009 chr11 1093759 1093759 1 + C G BLCA 1093759 - 1093739 1093779 41 AGAGGTGGACCGAGAGGTCTGAGGGGTTGAGGACTCAGGCG AGAGGTGGACCGAGAGGTCTCAGGGGTTGAGGACTCAGGCG Direct Gain 0 0.955176499576066 0 0.982917189598083 prediction 0.910352999152132 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1093759 chr11:1093759 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_130951 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643733103 0.965834379196166 0.000463287466205387 hm5C_site_51009 DeepMRMD:0.965834379196166;iRNA_m5C:0.000463287466205387 51010 chr20 57769045 57769045 1 + A G LUAD 57769045 - 57769025 57769065 41 GGAGGGGCCTGAGGCTGGGCTGGGAGAAAGAGGGGTCCCCA GGAGGGGCCTGAGGCTGGGCCGGGAGAAAGAGGGGTCCCCA Direct Gain 0 0.95517629230445 0 0.950227618217468 prediction 0.910352584608901 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57769045 chr20:57769045 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130952 0 0 0 0 0 exosome 0 0.500231643921092 0.900455236434936 0.000463287842184856 hm5C_site_51010 DeepMRMD:0.900455236434936;iRNA_m5C:0.000463287842184856 51011 chr4 30724227 30724227 1 + A G COAD 30724227 - 30724207 30724247 41 CACGGTGGCCTTGTCGGTCTTGGGGGGCTGCCCGCGGTCGC CACGGTGGCCTTGTCGGTCTCGGGGGGCTGCCCGCGGTCGC Direct Gain 0 0.955132916589987 0 0.987119913101196 prediction 0.910265833179974 Functional Gain - PCDH7 ENSG00000169851 CDS Human protein_coding chr4:30724227 chr4:30724227 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_130953 0 0 0 0 0 Ribosome 0 0.500231643921047 0.974239826202392 0.000463287842094706 hm5C_site_51011 DeepMRMD:0.974239826202392;iRNA_m5C:0.000463287842094706 51012 chr12 55420918 55420918 1 + T C rs34426727 55420918 + 55420898 55420938 41 GCCCCAAGTATTCAAGAGTTTGGGAGAATCGTCCTTTGGGA GCCCCAAGTATTCAAGAGTTCGGGAGAATCGTCCTTTGGGA Direct Gain 0 0.955126042050238 0 0.909136533737183 prediction 0.910252084100475 Functional Gain - NEUROD4 ENSG00000123307 CDS Human protein_coding chr12:55420918 chr12:55420918 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_130954 0 0 0 0 0 Cytosol 0 0.500231643921111 0.818273067474366 0.000463287842221494 hm5C_site_51012 DeepMRMD:0.818273067474366;iRNA_m5C:0.000463287842221494 51013 chr16 30990567 30990567 1 + C G OV 30990567 - 30990547 30990587 41 TGGGGGCAGGAGGGGGATGGGAGAAGAGGGACGCTCATCGG TGGGGGCAGGAGGGGGATGGCAGAAGAGGGACGCTCATCGG Direct Gain 0 0.955124579099569 0 0.782561063766479 prediction 0.910249158199139 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30990567 chr16:30990567 nonsynonymous SNV 0.987 4 21 hm5C_associated_SNPs_130955 0 0 0 0 0 Cytosol 0 0.500231643921093 0.565122127532958 0.000463287842185078 hm5C_site_51013 DeepMRMD:0.565122127532958;iRNA_m5C:0.000463287842185078 51014 chr1 24120731 24120731 1 + C G UCS 24120731 - 24120711 24120751 41 GGGCAGGTGAGGGCCGTGTAGAGGGACAGGGCCCCGCCCTG GGGCAGGTGAGGGCCGTGTACAGGGACAGGGCCCCGCCCTG Direct Gain 0 0.955122412994932 0 0.959716081619263 prediction 0.910244825989865 Functional Gain - LYPLA2 ENSG00000011009 CDS Human protein_coding chr1:24120731 chr1:24120731 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_130956 0 0 0 0 0 Ribosome 0 0.500231681173866 0.919432163238526 0.000463362347732588 hm5C_site_51014 DeepMRMD:0.919432163238526;iRNA_m5C:0.000463362347732588 51015 chr18 13095581 13095581 1 + C G BLCA 13095581 - 13095561 13095601 41 GCGAGCCGCCCGTGAGAGAAGAGGAGAACCCTGAGGACCTT GCGAGCCGCCCGTGAGAGAACAGGAGAACCCTGAGGACCTT Direct Gain 0 0.955106985760843 0 0.806798994541168 prediction 0.910213971521687 Functional Gain - CEP192 ENSG00000101639 CDS Human protein_coding chr18:13095581 chr18:13095581 nonsynonymous SNV 0.441 3 21 hm5C_associated_SNPs_130957 0 0 0 0 0 Nucleus 0 0.500231643922248 0.613597989082336 0.000463287844495897 hm5C_site_51015 DeepMRMD:0.613597989082336;iRNA_m5C:0.000463287844495897 51016 chr19 1529821 1529821 1 + C G rs143475861 1529821 - 1529801 1529841 41 GGCTGGGCCGGCTCCTACCCGGGGGGCCTACATCCAGGCAC GGCTGGGCCGGCTCCTACCCCGGGGGCCTACATCCAGGCAC Direct Gain 0 0.955106867098814 0 0.926866054534912 prediction 0.910213734197628 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1529821 chr19:1529821 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_130958 0 0 0 0 0 exosome 0 0.50023164391599 0.853732109069824 0.000463287831980574 hm5C_site_51016 DeepMRMD:0.853732109069824;iRNA_m5C:0.000463287831980574 51017 chr16 70694004 70694004 1 + C G BLCA 70694004 - 70693984 70694024 41 GCTGGGGGACCACGGGGGCGGAGGGTACAGCTGGGTGGCCG GCTGGGGGACCACGGGGGCGCAGGGTACAGCTGGGTGGCCG Direct Gain 0 0.955096475285169 0 0.728960156440735 prediction 0.910192950570338 Functional Gain - IL34 ENSG00000157368 CDS Human protein_coding chr16:70694004 chr16:70694004 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_130959 0 0 0 0 0 exosome 0 0.500231643921092 0.45792031288147 0.000463287842184856 hm5C_site_51017 DeepMRMD:0.45792031288147;iRNA_m5C:0.000463287842184856 51018 chr11 130079919 130079919 1 + G C rs150230720 130079919 + 130079899 130079939 41 AGTGGAGCTGGGAGGTAGAAGGGGAGGACACTGGTGGTTCT AGTGGAGCTGGGAGGTAGAACGGGAGGACACTGGTGGTTCT Direct Gain 0 0.955088432149825 0 0.889512479305267 prediction 0.91017686429965 Functional Gain - ST14 ENSG00000149418 UTR3 Human protein_coding chr11:130079919 chr11:130079919 . . 0 21 hm5C_associated_SNPs_130960 0 0 0 0 0 Ribosome 0 0.500231643921212 0.779024958610534 0.000463287842424887 hm5C_site_51018 DeepMRMD:0.779024958610534;iRNA_m5C:0.000463287842424887 51019 chr12 64798273 64798273 1 + G C rs551306702 64798273 + 64798253 64798293 41 GCGGCGGCTGCGGCGGCGGCGGCGGCGTTAGCCGGCCCTCG GCGGCGGCTGCGGCGGCGGCCGCGGCGTTAGCCGGCCCTCG Direct Gain 0 0.955064393430379 0 0.958928644657135 prediction 0.910128786860758 Functional Gain - XPOT ENSG00000184575 UTR5 Human protein_coding chr12:64798273 chr12:64798273 . . 0 21 hm5C_associated_SNPs_130961 0 0 1 0 0 Ribosome 0 0.500231643921092 0.91785728931427 0.000463287842184856 hm5C_site_51019 DeepMRMD:0.91785728931427;iRNA_m5C:0.000463287842184856 51020 chr1 9324433 9324433 1 + A G rs145918056 9324433 - 9324413 9324453 41 TGGAAGTTGGACTCCGGGTCTGAGAGTGGGACGCAGCGCTC TGGAAGTTGGACTCCGGGTCCGAGAGTGGGACGCAGCGCTC Direct Gain 0 0.955057935942466 0 0.952786564826965 prediction 0.910115871884932 Functional Gain - H6PD ENSG00000049239 CDS Human protein_coding chr1:9324433 chr1:9324433 synonymous SNV . 0 21 hm5C_associated_SNPs_130962 0 0 0 0 0 Ribosome 0 0.500232422832641 0.90557312965393 0.000464845665281377 hm5C_site_51020 DeepMRMD:0.90557312965393;iRNA_m5C:0.000464845665281377 51021 chr13 113909065 113909065 1 + A C UCEC 113909065 + 113909045 113909085 41 GGTGCTCCTCATGTTCAACGAGGGAGATGGCTTCAGCTTTG GGTGCTCCTCATGTTCAACGCGGGAGATGGCTTCAGCTTTG Direct Gain 0 0.955045040334652 0 0.864585220813751 prediction 0.910090080669303 Functional Gain - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113909065 chr13:113909065 nonsynonymous SNV 0.734 1 21 hm5C_associated_SNPs_130963 0 0 1 0 2 Cytosol 0 0.500231643921103 0.729170441627502 0.000463287842206617 hm5C_site_51021 DeepMRMD:0.729170441627502;iRNA_m5C:0.000463287842206617 51022 chr12 68042572 68042572 1 + C G rs549864726 68042572 - 68042552 68042592 41 CGGGGAGCTGGAAGCGCTGCGAGGACCGAAGACCGCCTGGC CGGGGAGCTGGAAGCGCTGCCAGGACCGAAGACCGCCTGGC Direct Gain 0 0.955041764246461 0 0.900212168693542 prediction 0.910083528492921 Functional Gain - DYRK2 ENSG00000127334 UTR5 Human protein_coding chr12:68042572 chr12:68042572 . . 0 21 hm5C_associated_SNPs_130964 0 0 0 0 0 Ribosome 0 0.500231643921092 0.800424337387084 0.000463287842184856 hm5C_site_51022 DeepMRMD:0.800424337387084;iRNA_m5C:0.000463287842184856 51023 chr16 1034954 1034954 1 + T C rs11542178 1034954 + 1034934 1034974 41 CCCGAGCCGGGCCAGGCCTATGGGGGCGCCTACTTCCACGC CCCGAGCCGGGCCAGGCCTACGGGGGCGCCTACTTCCACGC Direct Gain 0 0.955019460335859 0 0.953274786472321 prediction 0.910038920671719 Functional Gain - SOX8 ENSG00000005513 CDS Human protein_coding chr16:1034954 chr16:1034954 synonymous SNV . 0 21 hm5C_associated_SNPs_130965 0 0 0 0 0 exosome 0 0.500231643921092 0.906549572944642 0.000463287842184856 hm5C_site_51023 DeepMRMD:0.906549572944642;iRNA_m5C:0.000463287842184856 51024 chr6 29274592 29274592 1 + C G BLCA 29274592 - 29274572 29274612 41 ACGGTAATGATGGTGATAATGAGGAGGTTGCCTGTCAAGGC ACGGTAATGATGGTGATAATCAGGAGGTTGCCTGTCAAGGC Direct Gain 0 0.954983708144209 0 0.967510044574738 prediction 0.909967416288419 Functional Gain - OR14J1 ENSG00000204695 CDS Human protein_coding chr6:29274592 chr6:29274592 synonymous SNV . 0 21 hm5C_associated_SNPs_130966 0 0 0 0 0 unknown 0 0.500231643878774 0.935020089149476 0.000463287757547226 hm5C_site_51024 DeepMRMD:0.935020089149476;iRNA_m5C:0.000463287757547226 51025 chr16 89627671 89627671 1 + C G rs174035 89627671 - 89627651 89627691 41 GGACCCGACGCGGGGCGCGGGGCGATGCGGCGCGCCTTGGC GGACCCGACGCGGGGCGCGGCGCGATGCGGCGCGCCTTGGC Direct Gain 0 0.954972851078399 0 0.933062672615051 prediction 0.909945702156798 Functional Gain - RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627671 chr16:89627671 synonymous SNV . 0 21 hm5C_associated_SNPs_130967 0 0 0 0 0 Cytosol 0 0.500231643764542 0.866125345230102 0.0004632875290842 hm5C_site_51025 DeepMRMD:0.866125345230102;iRNA_m5C:0.0004632875290842 51026 chr19 17983302 17983302 1 + C G LUSC 17983302 - 17983282 17983322 41 GCAGACAGCGACAGGCCCACGGGCAGGGCCGCCAGGCGCCG GCAGACAGCGACAGGCCCACCGGCAGGGCCGCCAGGCGCCG Direct Gain 0 0.954966867994317 0 0.788479268550873 prediction 0.909933735988634 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17983302 chr19:17983302 synonymous SNV . 0 21 hm5C_associated_SNPs_130968 0 0 0 0 0 Nucleus 0 0.500231643921129 0.576958537101746 0.000463287842258575 hm5C_site_51026 DeepMRMD:0.576958537101746;iRNA_m5C:0.000463287842258575 51027 chr12 98943078 98943078 1 + A C rs28535939 98943078 + 98943058 98943098 41 AGTGGCACGATCTGGGCTCGATGCAACCTCTGCCTCCCAGG AGTGGCACGATCTGGGCTCGCTGCAACCTCTGCCTCCCAGG Direct Gain 0 0.954966539594573 0 0.303528815507889 prediction 0.909933079189146 Functional Gain - TMPO ENSG00000120802 UTR3 Human protein_coding chr12:98943078 chr12:98943078 . . 0 21 hm5C_associated_SNPs_130969 0 0 1 0 0 Ribosome 0 0.500231643921092 0 0.000463287842184634 hm5C_site_51027 DeepMRMD:0;iRNA_m5C:0.000463287842184634 51028 chrX 153037594 153037594 1 + C G rs11156607 153037594 - 153037574 153037614 41 CTGCTCAGGGCTCAGGGACGGAGGGGACAGCCCACCCCTCC CTGCTCAGGGCTCAGGGACGCAGGGGACAGCCCACCCCTCC Direct Gain 0 0.95495922949448 0 0.969830572605133 prediction 0.909918458988961 Functional Gain - PLXNB3 ENSG00000198753 intronic Human protein_coding chrX:153037594 chrX:153037594 . . 0 21 hm5C_associated_SNPs_130970 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.939661145210266 0.000463287842184856 hm5C_site_51028 DeepMRMD:0.939661145210266;iRNA_m5C:0.000463287842184856 51029 chr11 1267841 1267841 1 + C G LUSC 1267841 - 1267821 1267861 41 GGGTCCAGGCGGTGCCCAGGGAGGAAGAGGGGATGGCTGTA GGGTCCAGGCGGTGCCCAGGCAGGAAGAGGGGATGGCTGTA Direct Gain 0 0.954905588031158 0 0.665922522544861 prediction 0.909811176062316 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1267841 chr11:1267841 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_130971 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.331845045089722 0.000463287842184856 hm5C_site_51029 DeepMRMD:0.331845045089722;iRNA_m5C:0.000463287842184856 51030 chr21 43867218 43867218 1 + T C BLCA 43867218 + 43867198 43867238 41 AAAATAAAGAGGAAGGAAAATGGGAGTTGGTGAACCCACCG AAAATAAAGAGGAAGGAAAACGGGAGTTGGTGAACCCACCG Direct Gain 0 0.954899971349417 0 0.791056632995605 prediction 0.909799942698835 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43867218 chr21:43867218 nonsynonymous SNV 0.963 4 21 hm5C_associated_SNPs_130972 0 0 0 1 1 exosome 0 0.500231643921093 0.58211326599121 0.000463287842185078 hm5C_site_51030 DeepMRMD:0.58211326599121;iRNA_m5C:0.000463287842185078 51031 chr17 18659415 18659415 1 + G C CESC 18659415 + 18659395 18659435 41 AAACGCAGCAGGTCCTGATAGAGGAGAGAAATGTTTTCTGT AAACGCAGCAGGTCCTGATACAGGAGAGAAATGTTTTCTGT Direct Gain 0 0.954870062830646 0 0.732241809368134 prediction 0.909740125661292 Functional Gain - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18659415 chr17:18659415 nonsynonymous SNV 0.963 2 21 hm5C_associated_SNPs_130973 0 0 0 0 2 Nucleus 0 0.500231502015481 0.464483618736268 0.000463004030961223 hm5C_site_51031 DeepMRMD:0.464483618736268;iRNA_m5C:0.000463004030961223 51032 chr19 37581993 37581993 1 + T C ESCA 37581993 + 37581973 37582013 41 ATTTGTATAGAGATGTGATGTTGGAGAACTATAGCAACTTG ATTTGTATAGAGATGTGATGCTGGAGAACTATAGCAACTTG Direct Gain 0 0.954859440218352 0 0.788946628570557 prediction 0.909718880436704 Functional Gain - ZNF420 ENSG00000197050 CDS Human protein_coding chr19:37581993 chr19:37581993 synonymous SNV . 0 21 hm5C_associated_SNPs_130974 0 0 1 0 2 chromatin 0 0.500231760334117 0.577893257141114 0.000463520668233741 hm5C_site_51032 DeepMRMD:0.577893257141114;iRNA_m5C:0.000463520668233741 51033 chrX 109765747 109765747 1 + T C rs775966854 109765747 + 109765727 109765767 41 GGTAGGAAAGAGGAAGCAAATAGAAGAGAGAGGTTGAAAAA GGTAGGAAAGAGGAAGCAAACAGAAGAGAGAGGTTGAAAAA Direct Gain 0 0.954856841709101 0 0.713583827018738 prediction 0.909713683418203 Functional Gain - TDGF1P3 ENSG00000225366 ncRNA_exonic Human transcribed_processed_pseudogene chrX:109765747 chrX:109765747 . . 0 21 hm5C_associated_SNPs_130975 0 0 0 0 0 unknown 0 0.500231643921092 0.427167654037476 0.000463287842184856 hm5C_site_51033 DeepMRMD:0.427167654037476;iRNA_m5C:0.000463287842184856 51034 chr4 88767481 88767481 1 + A C rs61731016 88767481 + 88767461 88767501 41 CGGAATAAGGGTATGCCACAAGGGAAAGGCTCCTGGGGTAG CGGAATAAGGGTATGCCACACGGGAAAGGCTCCTGGGGTAG Direct Gain 0 0.954848132249746 0 0.86834442615509 prediction 0.909696264499492 Functional Gain - MEPE ENSG00000152595 CDS Human protein_coding chr4:88767481 chr4:88767481 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_130976 0 0 0 0 0 exosome 0 0.500231643919739 0.73668885231018 0.000463287839477688 hm5C_site_51034 DeepMRMD:0.73668885231018;iRNA_m5C:0.000463287839477688 51035 chr1 71512593 71512593 1 + T C LUAD 71512593 + 71512573 71512613 41 AGAAAAGGTTGCCCCAGTTATGCGAAGAGCTAGTCCCGTTG AGAAAAGGTTGCCCCAGTTACGCGAAGAGCTAGTCCCGTTG Direct Gain 0 0.95482843344973 0 0.804970145225525 prediction 0.90965686689946 Functional Gain - PTGER3 ENSG00000050628 CDS Human protein_coding chr1:71512593 chr1:71512593 nonsynonymous SNV 0.074 0 21 hm5C_associated_SNPs_130977 0 0 0 0 0 Endoplasmic reticulum 0 0.500231672859672 0.60994029045105 0.00046334571934481 hm5C_site_51035 DeepMRMD:0.60994029045105;iRNA_m5C:0.00046334571934481 51036 chr20 1874965 1874965 1 + G C rs528012649 1874965 + 1874945 1874985 41 GCCTCTCGCCAGTGGGAAGCGGGGAGCAGCCGCGCGGCCGG GCCTCTCGCCAGTGGGAAGCCGGGAGCAGCCGCGCGGCCGG Direct Gain 0 0.954827767471694 0 0.961808443069458 prediction 0.909655534943387 Functional Gain - SIRPA ENSG00000198053 upstream Human protein_coding chr20:1874965 chr20:1874965 . . 0 21 hm5C_associated_SNPs_130978 0 0 0 0 0 Nucleus 0 0.500231643921092 0.923616886138916 0.000463287842184856 hm5C_site_51036 DeepMRMD:0.923616886138916;iRNA_m5C:0.000463287842184856 51037 chr8 145535491 145535491 1 + A G UCEC 145535491 - 145535471 145535511 41 GCTCCCGCCGGGGGAGGCCATGGGGCTGGCAGGAGCCAGCT GCTCCCGCCGGGGGAGGCCACGGGGCTGGCAGGAGCCAGCT Direct Gain 0 0.954821801997879 0 0.943755507469177 prediction 0.909643603995759 Functional Gain - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535491 chr8:145535491 nonsynonymous SNV 0.026 0 21 hm5C_associated_SNPs_130979 0 0 0 0 0 chromatin 0 0.500231643921108 0.887511014938354 0.000463287842215721 hm5C_site_51037 DeepMRMD:0.887511014938354;iRNA_m5C:0.000463287842215721 51038 chr19 39989627 39989627 1 + C G LGG 39989627 - 39989607 39989647 41 GGAGAGGAGCCCGGACATCCGTGGGGAGACCATGGCCTTCT GGAGAGGAGCCCGGACATCCCTGGGGAGACCATGGCCTTCT Direct Gain 0 0.954818562301909 0 0.686402678489685 prediction 0.909637124603818 Functional Gain - DLL3 ENSG00000090932 CDS Human protein_coding chr19:39989627 chr19:39989627 nonsynonymous SNV 0.004 1 21 hm5C_associated_SNPs_130980 0 0 0 0 0 exosome 0 0.500231643921093 0.37280535697937 0.000463287842185078 hm5C_site_51038 DeepMRMD:0.37280535697937;iRNA_m5C:0.000463287842185078 51039 chr11 5411357 5411357 1 + A C ESCA 5411357 + 5411337 5411377 41 GTAGCAGGCCTGGCCTCCCAAGAGGAGCAGCGCCGTGCCTT GTAGCAGGCCTGGCCTCCCACGAGGAGCAGCGCCGTGCCTT Direct Gain 0 0.954812793105181 0 0.932254910469055 prediction 0.909625586210363 Functional Gain - OR51M1 ENSG00000184698 CDS Human protein_coding chr11:5411357 chr11:5411357 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_130981 0 0 0 0 0 nucleoplasm 0 0.500231643921092 0.86450982093811 0.000463287842184856 hm5C_site_51039 DeepMRMD:0.86450982093811;iRNA_m5C:0.000463287842184856 51040 chr5 118970190 118970190 1 + T C UCEC 118970190 + 118970170 118970210 41 CTCCAGGAGCATGTGCAGTTTGGGATCAGAGAGGGCTTCAG CTCCAGGAGCATGTGCAGTTCGGGATCAGAGAGGGCTTCAG Direct Gain 0 0.954811279232487 0 0.965326368808746 prediction 0.909622558464973 Functional Gain - FAM170A ENSG00000164334 CDS Human protein_coding chr5:118970190 chr5:118970190 synonymous SNV . 0 21 hm5C_associated_SNPs_130982 0 0 0 0 0 exosome 0 0.500231643921092 0.930652737617492 0.000463287842184634 hm5C_site_51040 DeepMRMD:0.930652737617492;iRNA_m5C:0.000463287842184634 51041 chr15 74219535 74219535 1 + G C PRAD 74219535 + 74219515 74219555 41 GTGGCCGTCGGGGACAGCACGGGCATGGCCCGGGCCCGCAC GTGGCCGTCGGGGACAGCACCGGCATGGCCCGGGCCCGCAC Direct Gain 0 0.954810320558273 0 0.94346034526825 prediction 0.909620641116545 Functional Gain - LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74219535 chr15:74219535 synonymous SNV . 0 21 hm5C_associated_SNPs_130983 0 0 0 0 0 exosome 0 0.500231644670344 0.8869206905365 0.000463289340688178 hm5C_site_51041 DeepMRMD:0.8869206905365;iRNA_m5C:0.000463289340688178 51042 chr5 7889311 7889311 1 + T C COAD 7889311 + 7889291 7889331 41 AGCCGATTATAGCCGCTTTGTACGAGATGCCTGTGCCTGCT AGCCGATTATAGCCGCTTTGCACGAGATGCCTGTGCCTGCT Direct Gain 0 0.954805384588971 0 0.667982280254364 prediction 0.909610769177942 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7889311 chr5:7889311 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_130984 0 0 1 1 1 Nucleus 0 0.500231643931549 0.335964560508728 0.000463287863097905 hm5C_site_51042 DeepMRMD:0.335964560508728;iRNA_m5C:0.000463287863097905 51043 chr19 10663652 10663652 1 + C G LUSC 10663652 - 10663632 10663672 41 GTGTGGGCTGGGCGAGCTGGGAGCAGAGGTCGTCCAGGCTG GTGTGGGCTGGGCGAGCTGGCAGCAGAGGTCGTCCAGGCTG Direct Gain 0 0.954754666465393 0 0.819885492324829 prediction 0.909509332930786 Functional Gain - ATG4D ENSG00000130734 CDS Human protein_coding chr19:10663652 chr19:10663652 nonsynonymous SNV 0.988 1 21 hm5C_associated_SNPs_130985 0 0 0 0 0 Ribosome 0 0.500231643919185 0.639770984649658 0.000463287838369686 hm5C_site_51043 DeepMRMD:0.639770984649658;iRNA_m5C:0.000463287838369686 51044 chr1 15755550 15755550 1 + A G rs549820554 15755550 - 15755530 15755570 41 AGGCGGCAGGCACATGGGGCTGGGAGGGACCTAGGGCCAGG AGGCGGCAGGCACATGGGGCCGGGAGGGACCTAGGGCCAGG Direct Gain 0 0.95473451351017 0 0.740419268608093 prediction 0.90946902702034 Functional Gain - EFHD2 ENSG00000142634 UTR3 Human protein_coding chr1:15755550 chr1:15755550 . . 0 21 hm5C_associated_SNPs_130986 0 0 0 0 0 Ribosome 0 0.500231643921002 0.480838537216186 0.000463287842003002 hm5C_site_51044 DeepMRMD:0.480838537216186;iRNA_m5C:0.000463287842003002 51045 chr1 63876858 63876858 1 + T C LGG 63876858 + 63876838 63876878 41 CTTTGCTTTGTGGGGTGTTCTTGGAATATCTTGTGACTGCG CTTTGCTTTGTGGGGTGTTCCTGGAATATCTTGTGACTGCG Direct Gain 0 0.954719826928029 0 0.903459966182709 prediction 0.909439653856058 Functional Gain - ALG6 ENSG00000088035 CDS Human protein_coding chr1:63876858 chr1:63876858 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_130987 0 0 1 0 0 Endoplasmic reticulum 0 0.500231797987357 0.806919932365418 0.000463595974714348 hm5C_site_51045 DeepMRMD:0.806919932365418;iRNA_m5C:0.000463595974714348 51046 chr15 42652037 42652037 1 + A G LUAD 42652037 - 42652017 42652057 41 CCGGGGCTCAGCCGCTGTCCTTGGAGCCACAGATGCGCTAA CCGGGGCTCAGCCGCTGTCCCTGGAGCCACAGATGCGCTAA Direct Gain 0 0.954698349813419 0 0.941982269287109 prediction 0.909396699626837 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42652037 chr15:42652037 nonsynonymous SNV 0.876 1 21 hm5C_associated_SNPs_130988 0 0 0 0 0 Cytosol 0 0.500231643923519 0.883964538574218 0.000463287847038307 hm5C_site_51046 DeepMRMD:0.883964538574218;iRNA_m5C:0.000463287847038307 51047 chr19 55823390 55823390 1 + C G rs201200452 55823390 - 55823370 55823410 41 CCAGGAGCTTCTTGTCCTTGGGGGGGCCTCGGCGGGGAGAG CCAGGAGCTTCTTGTCCTTGCGGGGGCCTCGGCGGGGAGAG Direct Gain 0 0.954691480431301 0 0.911576926708221 prediction 0.909382960862601 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55823390 chr19:55823390 nonsynonymous SNV 0.333 0 21 hm5C_associated_SNPs_130989 0 0 0 0 0 chromatin 0 0.500231637960681 0.823153853416442 0.000463275921361639 hm5C_site_51047 DeepMRMD:0.823153853416442;iRNA_m5C:0.000463275921361639 51048 chr10 15115601 15115601 1 + G C rs548543187 15115601 + 15115581 15115621 41 CCTGGGAGGTGGAGCTTGCAGTGAACCGAGATCGCTCCACT CCTGGGAGGTGGAGCTTGCACTGAACCGAGATCGCTCCACT Direct Gain 0 0.954675830520619 0 0.279615968465805 prediction 0.909351661041239 Functional Gain - ACBD7-DCLRE1CP1 ENSG00000237470 ncRNA_intronic Human unprocessed_pseudogene chr10:15115601 chr10:15115601 . . 0 21 hm5C_associated_SNPs_130990 0 0 0 0 0 unknown 0 0.500231643921092 0 0.000463287842184856 hm5C_site_51048 DeepMRMD:0;iRNA_m5C:0.000463287842184856 51049 chr19 17688814 17688814 1 + T G rs2115492 17688814 - 17688794 17688834 41 TGGTAGGGGTCCCGGTAGCCAGGCAGCATCTGGATCCCCAG TGGTAGGGGTCCCGGTAGCCCGGCAGCATCTGGATCCCCAG Direct Gain 0 0.954649835405147 0 0.841768145561218 prediction 0.909299670810294 Functional Gain - COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17688814 chr19:17688814 synonymous SNV . 0 21 hm5C_associated_SNPs_130991 0 0 0 0 0 Ribosome 0 0.500231629647869 0.683536291122436 0.000463259295737428 hm5C_site_51049 DeepMRMD:0.683536291122436;iRNA_m5C:0.000463259295737428 51050 chr21 42540173 42540173 1 + C G rs532546284 42540173 - 42540153 42540193 41 CATGCCCACGGCGGGGCCCGGGGGGCGCGCCCAGCCTAGCC CATGCCCACGGCGGGGCCCGCGGGGCGCGCCCAGCCTAGCC Direct Gain 0 0.954615919319624 0 0.918086349964142 prediction 0.909231838639247 Functional Gain - BACE2 ENSG00000182240 UTR5 Human protein_coding chr21:42540173 chr21:42540173 . . 0 21 hm5C_associated_SNPs_130992 0 0 0 0 0 Ribosome 0 0.500231643921095 0.836172699928284 0.000463287842190185 hm5C_site_51050 DeepMRMD:0.836172699928284;iRNA_m5C:0.000463287842190185 51051 chr15 34646811 34646811 1 + G C LUAD 34646811 + 34646791 34646831 41 TGGGGACTCACTTGGCCACTGGGGAGTCAGATGGAAAACAA TGGGGACTCACTTGGCCACTCGGGAGTCAGATGGAAAACAA Direct Gain 0 0.954596308866322 0 0.836860060691833 prediction 0.909192617732643 Functional Gain - NUTM1 ENSG00000184507 CDS Human protein_coding chr15:34646811 chr15:34646811 nonsynonymous SNV 0.771 1 21 hm5C_associated_SNPs_130993 0 0 0 0 0 exosome 0 0.500231643920113 0.673720121383666 0.000463287840225757 hm5C_site_51051 DeepMRMD:0.673720121383666;iRNA_m5C:0.000463287840225757 51052 chr6 109761931 109761931 1 + A G rs544470120 109761931 - 109761911 109761951 41 CCCAGCAACAGGCGCAAAGTTGAGGAAAGGCCCAGCCGCCA CCCAGCAACAGGCGCAAAGTCGAGGAAAGGCCCAGCCGCCA Direct Gain 0 0.95459359785747 0 0.878373146057129 prediction 0.909187195714941 Functional Gain - PPIL6;SMPD2 ENSG00000185250 UTR5 Human protein_coding chr6:109761931 chr6:109761931 . . 0 21 hm5C_associated_SNPs_130994 0 0 0 0 0 unknown 0 0.500231643921093 0.756746292114258 0.000463287842185522 hm5C_site_51052 DeepMRMD:0.756746292114258;iRNA_m5C:0.000463287842185522 51053 chr5 147041051 147041051 1 + A C PAAD 147041051 + 147041031 147041071 41 ATGAAGAGAAATGAGCCTCAAAGGACGGGTGTGCTCCTAGG ATGAAGAGAAATGAGCCTCACAGGACGGGTGTGCTCCTAGG Direct Gain 0 0.954544040229363 0 0.733133792877197 prediction 0.909088080458726 Functional Gain - JAKMIP2-AS1 ENSG00000176049 intronic Human protein_coding chr5:147041051 chr5:147041051 . . 0 21 hm5C_associated_SNPs_130995 0 0 0 0 0 unknown 0 0.500231643921092 0.466267585754394 0.000463287842184856 hm5C_site_51053 DeepMRMD:0.466267585754394;iRNA_m5C:0.000463287842184856 51054 chr11 1093408 1093408 1 + A G COAD 1093408 - 1093388 1093428 41 GGTGGTGATGGGTGTCGTGGTTGGGGTCTGTGTGCCGGTGG GGTGGTGATGGGTGTCGTGGCTGGGGTCTGTGTGCCGGTGG Direct Gain 0 0.95452816401061 0 0.792685031890869 prediction 0.90905632802122 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1093408 chr11:1093408 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_130996 0 0 0 0 0 Endoplasmic reticulum 0 0.500231542814621 0.585370063781738 0.000463085629242688 hm5C_site_51054 DeepMRMD:0.585370063781738;iRNA_m5C:0.000463085629242688 51055 chr7 102087289 102087289 1 + A G rs138854940 102087289 - 102087269 102087309 41 GTGTGACTCCCAGGGCCAGGTGGGGGGCCAGGCTGGCGCCG GTGTGACTCCCAGGGCCAGGCGGGGGGCCAGGCTGGCGCCG Direct Gain 0 0.954513080035026 0 0.971439003944397 prediction 0.909026160070052 Functional Gain - ORAI2 ENSG00000160991 CDS Human protein_coding chr7:102087289 chr7:102087289 synonymous SNV . 0 21 hm5C_associated_SNPs_130997 0 0 0 0 0 Nucleus 0 0.500231642140828 0.942878007888794 0.000463284281656762 hm5C_site_51055 DeepMRMD:0.942878007888794;iRNA_m5C:0.000463284281656762 51056 chr19 10798094 10798094 1 + C G UCEC 10798094 - 10798074 10798114 41 GGTAGTAGGAGCCATAGCCGGAGGAGCCACCACCGCCCCCG GGTAGTAGGAGCCATAGCCGCAGGAGCCACCACCGCCCCCG Direct Gain 0 0.954510780031027 0 0.97243195772171 prediction 0.909021560062054 Functional Gain - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10798094 chr19:10798094 nonsynonymous SNV 0.594 3 21 hm5C_associated_SNPs_130998 0 0 0 0 0 Cytosol 0 0.500231643927552 0.94486391544342 0.0004632878551043 hm5C_site_51056 DeepMRMD:0.94486391544342;iRNA_m5C:0.0004632878551043 51057 chr13 37269257 37269257 1 + G C ESCA 37269257 + 37269237 37269277 41 TCAGGATTTTCGGGAAGTGTGGAGAATGGAACTTTTCTTGA TCAGGATTTTCGGGAAGTGTCGAGAATGGAACTTTTCTTGA Direct Gain 0 0.954503218149476 0 0.886762976646423 prediction 0.909006436298953 Functional Gain - SERTM1 ENSG00000180440 CDS Human protein_coding chr13:37269257 chr13:37269257 synonymous SNV . 0 21 hm5C_associated_SNPs_130999 0 0 0 0 0 exosome 0 0.50023164385579 0.773525953292846 0.000463287711579996 hm5C_site_51057 DeepMRMD:0.773525953292846;iRNA_m5C:0.000463287711579996 51058 chr17 34068069 34068069 1 + A G STAD 34068069 - 34068049 34068089 41 ACGATGATGATGGGCGTCTCTGAGGTTCCGATCACCCTGTG ACGATGATGATGGGCGTCTCCGAGGTTCCGATCACCCTGTG Direct Gain 0 0.95448778134668 0 0.934617161750793 prediction 0.90897556269336 Functional Gain - RASL10B ENSG00000141150 CDS Human other chr17:34068069 chr17:34068069 synonymous SNV . 0 21 hm5C_associated_SNPs_131000 0 0 0 0 0 insoluble cytoplasm 0 0.500195261383045 0.869234323501586 0.000390522766089862 hm5C_site_51058 DeepMRMD:0.869234323501586;iRNA_m5C:0.000390522766089862 51059 chr12 68051371 68051371 1 + T C UCEC 68051371 + 68051351 68051391 41 TATGAGGTCCTCAAGGTCATTGGGAAGGGGAGCTTTGGGCA TATGAGGTCCTCAAGGTCATCGGGAAGGGGAGCTTTGGGCA Direct Gain 0 0.954466390057117 0 0.821631133556366 prediction 0.908932780114235 Functional Gain - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68051371 chr12:68051371 synonymous SNV . 0 21 hm5C_associated_SNPs_131001 0 0 1 0 0 Ribosome 0 0.500231643921089 0.643262267112732 0.000463287842177751 hm5C_site_51059 DeepMRMD:0.643262267112732;iRNA_m5C:0.000463287842177751 51060 chr3 14814462 14814462 1 + C G rs148438932 14814462 - 14814442 14814482 41 GGAGGACAGGGTGGGAGACCGGGGAGGCAGGGCTGGGCTGG GGAGGACAGGGTGGGAGACCCGGGAGGCAGGGCTGGGCTGG Direct Gain 0 0.95444912694593 0 0.958771705627441 prediction 0.908898253891859 Functional Gain - C3orf20 ENSG00000131379 UTR3 Human protein_coding chr3:14814462 chr3:14814462 . . 0 21 hm5C_associated_SNPs_131002 0 0 0 0 0 nucleoplasm 0 0.500231643921092 0.917543411254882 0.000463287842184856 hm5C_site_51060 DeepMRMD:0.917543411254882;iRNA_m5C:0.000463287842184856 51061 chr22 32894453 32894453 1 + A G rs144538200 32894453 - 32894433 32894473 41 GTCTAAAGGGAAATCTGTCATTGGGGCCGCCTCGCCCTGGC GTCTAAAGGGAAATCTGTCACTGGGGCCGCCTCGCCCTGGC Direct Gain 0 0.954447145397003 0 0.838133871555328 prediction 0.908894290794006 Functional Gain - FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32894453 chr22:32894453 nonsynonymous SNV 0.306 0 21 hm5C_associated_SNPs_131003 1 0 0 0 0 chromatin 0 0.500231616828195 0.676267743110656 0.000463233656390338 hm5C_site_51061 DeepMRMD:0.676267743110656;iRNA_m5C:0.000463233656390338 Parkinson Disease, Recessive Parkinson Disease, Recessive 51062 chr14 23341328 23341328 1 + A G rs56248501 23341328 - 23341308 23341348 41 AGGCGGCGGCAGCCCGGGAGTAGGGGCGGTGCCTTTCGCCA AGGCGGCGGCAGCCCGGGAGCAGGGGCGGTGCCTTTCGCCA Direct Gain 0 0.954439933673255 0 0.947125554084778 prediction 0.908879867346509 Functional Gain - LRP10 ENSG00000197324 UTR5 Human protein_coding chr14:23341328 chr14:23341328 . . 0 21 hm5C_associated_SNPs_131004 0 0 0 0 0 Ribosome 0 0.500231645173642 0.894251108169556 0.000463290347283429 hm5C_site_51062 DeepMRMD:0.894251108169556;iRNA_m5C:0.000463290347283429 51063 chr22 17590269 17590269 1 + C G rs4819555 17590269 - 17590249 17590289 41 GGCGAGTCCTCGGGGTCCACGGGGAGGAAGAGGACGCTATT GGCGAGTCCTCGGGGTCCACCGGGAGGAAGAGGACGCTATT Direct Gain 0 0.954434333218864 0 0.963176012039185 prediction 0.908868666437729 Functional Gain - IL17RA ENSG00000177663 CDS Human protein_coding chr22:17590269 chr22:17590269 synonymous SNV . 0 21 hm5C_associated_SNPs_131005 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921369 0.92635202407837 0.000463287842737303 hm5C_site_51063 DeepMRMD:0.92635202407837;iRNA_m5C:0.000463287842737303 51064 chr11 125439423 125439423 1 + T C rs3017281 125439423 + 125439403 125439443 41 GCGCCCCGGCGGAGCTGGCCTGCGGTGGGCTAGGGGCAGGG GCGCCCCGGCGGAGCTGGCCCGCGGTGGGCTAGGGGCAGGG Direct Gain 0 0.954364788742498 0 0.796232461929321 prediction 0.908729577484996 Functional Gain - EI24 ENSG00000149547 UTR5 Human protein_coding chr11:125439423 chr11:125439423 . . 0 21 hm5C_associated_SNPs_131006 0 0 1 0 1 Cytosol 0 0.500231643921092 0.592464923858642 0.000463287842184856 hm5C_site_51064 DeepMRMD:0.592464923858642;iRNA_m5C:0.000463287842184856 51065 chr7 143748172 143748172 1 + G C LUAD 143748172 + 143748152 143748192 41 CGCATCCTGGCGGCCATCTTGAGGATCCAGTCTGGGGAGGG CGCATCCTGGCGGCCATCTTCAGGATCCAGTCTGGGGAGGG Direct Gain 0 0.95433551268575 0 0.94382381439209 prediction 0.9086710253715 Functional Gain - OR2A5 ENSG00000221836 CDS Human protein_coding chr7:143748172 chr7:143748172 nonsynonymous SNV 0.807 3 21 hm5C_associated_SNPs_131007 0 0 0 0 0 unknown 0 0.500231643998015 0.88764762878418 0.000463287996029793 hm5C_site_51065 DeepMRMD:0.88764762878418;iRNA_m5C:0.000463287996029793 51066 chr2 232576099 232576099 1 + T C SKCM 232576099 + 232576079 232576119 41 GTTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAA GTTGTGGAAGAGGCAGAAAACGGAAGAGACGCCCCTGCTAA Direct Gain 0 0.954308180556298 0 0.927837014198303 prediction 0.908616361112595 Functional Gain - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576099 chr2:232576099 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131008 0 0 1 0 2 Ribosome 0 0.500231643984169 0.855674028396606 0.000463287968337278 hm5C_site_51066 DeepMRMD:0.855674028396606;iRNA_m5C:0.000463287968337278 51067 chr20 814504 814504 1 + T C rs138802520 814504 + 814484 814524 41 TGGGGCCTCCTGGGCGTCGTTGGGAGCGGCCACTACCGGCC TGGGGCCTCCTGGGCGTCGTCGGGAGCGGCCACTACCGGCC Direct Gain 0 0.954291701012632 0 0.981836915016174 prediction 0.908583402025265 Functional Gain - FAM110A ENSG00000125898 UTR5 Human protein_coding chr20:814504 chr20:814504 . . 0 21 hm5C_associated_SNPs_131009 0 0 1 0 1 Cytosol 0 0.500231643930891 0.963673830032348 0.000463287861782957 hm5C_site_51067 DeepMRMD:0.963673830032348;iRNA_m5C:0.000463287861782957 51068 chr19 929753 929753 1 + A G rs1799595 929753 - 929733 929773 41 TCAGAGCCGCCGGGGCTGGCTGGGTGTCCCAGGCCCGCAGC TCAGAGCCGCCGGGGCTGGCCGGGTGTCCCAGGCCCGCAGC Direct Gain 0 0.954288879656866 0 0.95378589630127 prediction 0.908577759313731 Functional Gain - ARID3A ENSG00000116017 CDS Human protein_coding chr19:929753 chr19:929753 synonymous SNV . 0 21 hm5C_associated_SNPs_131010 0 0 0 0 0 Cytosol 0 0.500231644173425 0.90757179260254 0.000463288346850499 hm5C_site_51068 DeepMRMD:0.90757179260254;iRNA_m5C:0.000463288346850499 51069 chr8 418940 418940 1 + T C rs111466889 418940 + 418920 418960 41 CCTGGGAAGAACTGCCCTTCTGCAAAGGGGGGACTGCATGG CCTGGGAAGAACTGCCCTTCCGCAAAGGGGGGACTGCATGG Direct Gain 0 0.954266660271217 0 0.861603379249573 prediction 0.908533320542435 Functional Gain - FBXO25 ENSG00000147364 UTR3 Human protein_coding chr8:418940 chr8:418940 . . 0 21 hm5C_associated_SNPs_131011 0 0 1 0 0 Cytosol 0 0.500231643921092 0.723206758499146 0.000463287842184856 hm5C_site_51069 DeepMRMD:0.723206758499146;iRNA_m5C:0.000463287842184856 51070 chr2 37429725 37429725 1 + T C rs367610537 37429725 + 37429705 37429745 41 TTGAACATGGGAGATGGAGGTTGCAGTGAGCCAAGATCATG TTGAACATGGGAGATGGAGGCTGCAGTGAGCCAAGATCATG Direct Gain 0 0.954262100495374 0 0.28173553943634 prediction 0.908524200990749 Functional Gain - CEBPZOS ENSG00000218739 UTR3 Human protein_coding chr2:37429725 chr2:37429725 . . 0 21 hm5C_associated_SNPs_131012 0 0 1 0 0 Ribosome 0 0.500231651080649 0 0.000463302161297863 hm5C_site_51070 DeepMRMD:0;iRNA_m5C:0.000463302161297863 51071 chr18 13826035 13826035 1 + T C rs538464430 13826035 + 13826015 13826055 41 TGGTGAGCATGTCCAGTGCCTGGGAGACCATCACCATCTAC TGGTGAGCATGTCCAGTGCCCGGGAGACCATCACCATCTAC Direct Gain 0 0.954245785077338 0 0.818453907966614 prediction 0.908491570154675 Functional Gain - MC5R ENSG00000176136 CDS Human protein_coding chr18:13826035 chr18:13826035 nonsynonymous SNV 0.911 4 21 hm5C_associated_SNPs_131013 0 0 0 0 0 unknown 0 0.500231643923377 0.636907815933228 0.000463287846753202 hm5C_site_51071 DeepMRMD:0.636907815933228;iRNA_m5C:0.000463287846753202 51072 chr1 220825440 220825440 1 + A G UCEC 220825440 - 220825420 220825460 41 GGTTGGCAGTGTGACTTTAATAGGATGACCAGAAGTGGACA GGTTGGCAGTGTGACTTTAACAGGATGACCAGAAGTGGACA Direct Gain 0 0.954243893422936 0 0.815147161483765 prediction 0.908487786845873 Functional Gain - MARK1 ENSG00000116141 CDS Human protein_coding chr1:220825440 chr1:220825440 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_131014 0 0 0 0 0 exosome 0 0.500225995443876 0.63029432296753 0.000451990887751164 hm5C_site_51072 DeepMRMD:0.63029432296753;iRNA_m5C:0.000451990887751164 51073 chr1 248263108 248263108 1 + T C LUAD 248263108 + 248263088 248263128 41 AATGATGTGTGTGAAGATGATTGGAGGCTCTTGGACACTGG AATGATGTGTGTGAAGATGACTGGAGGCTCTTGGACACTGG Direct Gain 0 0.954213513707365 0 0.701276063919067 prediction 0.908427027414731 Functional Gain - OR2L13 ENSG00000196071 CDS Human protein_coding chr1:248263108 chr1:248263108 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131015 0 0 0 0 0 Nucleus 0 0.500231628302783 0.402552127838134 0.000463256605565787 hm5C_site_51073 DeepMRMD:0.402552127838134;iRNA_m5C:0.000463256605565787 51074 chr22 21045492 21045492 1 + T C UCEC 21045492 + 21045472 21045512 41 ACCGCACATTGGGGTCACTATTGGAGTGGATGGAGGCCCTT ACCGCACATTGGGGTCACTACTGGAGTGGATGGAGGCCCTT Direct Gain 0 0.954209365763918 0 0.807706832885742 prediction 0.908418731527835 Functional Gain - POM121L4P ENSG00000217261 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:21045492 chr22:21045492 . . 0 21 hm5C_associated_SNPs_131016 0 0 0 0 0 unknown 0 0.500231643921092 0.615413665771484 0.000463287842184856 hm5C_site_51074 DeepMRMD:0.615413665771484;iRNA_m5C:0.000463287842184856 51075 chr8 61769333 61769333 1 + T G COAD 61769333 - 61769313 61769353 41 CCATCCACTAGGGAGCCATTAAGGAGATGCCTTGTGGGTGT CCATCCACTAGGGAGCCATTCAGGAGATGCCTTGTGGGTGT Direct Gain 0 0.954204929769083 0 0.884363114833832 prediction 0.908409859538166 Functional Gain - CHD7 ENSG00000171316 CDS Human protein_coding chr8:61769333 chr8:61769333 synonymous SNV . 0 21 hm5C_associated_SNPs_131017 0 0 0 0 0 Cytosol 0 0.500231643921092 0.768726229667664 0.000463287842184856 hm5C_site_51075 DeepMRMD:0.768726229667664;iRNA_m5C:0.000463287842184856 51076 chr11 1998536 1998536 1 + C G rs189912603 1998536 - 1998516 1998556 41 GGTGGGAGGTGGGACCGGCAGGGGAAGCTCAGTCCCACAGC GGTGGGAGGTGGGACCGGCACGGGAAGCTCAGTCCCACAGC Direct Gain 0 0.954195228724555 0 0.930388569831848 prediction 0.90839045744911 Functional Gain - MRPL23;MRPL23-AS1 ENSG00000214026 intronic Human protein_coding chr11:1998536 chr11:1998536 . . 0 21 hm5C_associated_SNPs_131018 0 0 0 0 0 unknown 0 0.500231643921095 0.860777139663696 0.000463287842189075 hm5C_site_51076 DeepMRMD:0.860777139663696;iRNA_m5C:0.000463287842189075 51077 chr6 90605138 90605138 1 + T C LGG 90605138 + 90605118 90605158 41 CTTGAAGTAGACCCTTCCAATGGGAAAAAGGACTGGTCTGA CTTGAAGTAGACCCTTCCAACGGGAAAAAGGACTGGTCTGA Direct Gain 0 0.954148609890332 0 0.824007153511047 prediction 0.908297219780664 Functional Gain - GJA10 ENSG00000135355 CDS Human protein_coding chr6:90605138 chr6:90605138 synonymous SNV . 0 21 hm5C_associated_SNPs_131019 0 0 0 0 0 unknown 0 0.500231643920488 0.648014307022094 0.000463287840975157 hm5C_site_51077 DeepMRMD:0.648014307022094;iRNA_m5C:0.000463287840975157 51078 chr8 142195279 142195279 1 + A G UCEC 142195279 - 142195259 142195299 41 GCTCAGAGCACACCATAACTTGGGGTGAGCATCTTCAACTT GCTCAGAGCACACCATAACTCGGGGTGAGCATCTTCAACTT Direct Gain 0 0.954113419811955 0 0.892238855361938 prediction 0.90822683962391 Functional Gain - DENND3 ENSG00000105339 CDS Human protein_coding chr8:142195279 chr8:142195279 nonsynonymous SNV 0.272 2 21 hm5C_associated_SNPs_131020 0 0 0 0 0 Nucleus 0 0.500231643921092 0.784477710723876 0.000463287842184856 hm5C_site_51078 DeepMRMD:0.784477710723876;iRNA_m5C:0.000463287842184856 51079 chr10 94834700 94834700 1 + A G rs140717057 94834700 - 94834680 94834720 41 AGTTGGGGTTCGCAGCCCAGTAGGATGCGCATGGCGATTCG AGTTGGGGTTCGCAGCCCAGCAGGATGCGCATGGCGATTCG Direct Gain 0 0.954105683572179 0 0.675703585147858 prediction 0.908211367144358 Functional Gain - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94834700 chr10:94834700 synonymous SNV . 0 21 hm5C_associated_SNPs_131021 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.351407170295716 0.000463287842184856 hm5C_site_51079 DeepMRMD:0.351407170295716;iRNA_m5C:0.000463287842184856 51080 chr13 32332513 32332513 1 + T C LUSC 32332513 + 32332493 32332533 41 TGTGATGGCAAGGATGACTGTGGGAACGGGGCGGACGAAGA TGTGATGGCAAGGATGACTGCGGGAACGGGGCGGACGAAGA Direct Gain 0 0.954080274659048 0 0.962398290634155 prediction 0.908160549318095 Functional Gain - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32332513 chr13:32332513 synonymous SNV . 0 21 hm5C_associated_SNPs_131022 0 0 0 0 1 exosome 0 0.500231680979478 0.92479658126831 0.000463361958956465 hm5C_site_51080 DeepMRMD:0.92479658126831;iRNA_m5C:0.000463361958956465 51081 chr1 177250164 177250164 1 + G C LUSC 177250164 + 177250144 177250184 41 CTGACTGGGAAAGGACTAACGTGGATGCAGCTGCCCAGTGC CTGACTGGGAAAGGACTAACCTGGATGCAGCTGCCCAGTGC Direct Gain 0 0.954062159992709 0 0.839352607727051 prediction 0.908124319985418 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177250164 chr1:177250164 nonsynonymous SNV 0.995 1 21 hm5C_associated_SNPs_131023 0 0 0 0 0 Nucleus 0 0.500231644696414 0.678705215454102 0.000463289392828692 hm5C_site_51081 DeepMRMD:0.678705215454102;iRNA_m5C:0.000463289392828692 51082 chr19 30934613 30934613 1 + C G LUAD 30934613 - 30934593 30934633 41 TTGGGCCGGGGATGGAGCTCGGGGAAGGCATGGCTGAGCTG TTGGGCCGGGGATGGAGCTCCGGGAAGGCATGGCTGAGCTG Direct Gain 0 0.954049135401937 0 0.762256264686584 prediction 0.908098270803874 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934613 chr19:30934613 synonymous SNV . 0 21 hm5C_associated_SNPs_131024 0 0 0 0 0 exosome 0 0.500231643921108 0.524512529373168 0.000463287842216609 hm5C_site_51082 DeepMRMD:0.524512529373168;iRNA_m5C:0.000463287842216609 51083 chr3 97851543 97851543 1 + T C rs150362159 97851543 + 97851523 97851563 41 GAGGGCATGCTGTGAGGACATGGAAGAGGAAAATGCAACAT GAGGGCATGCTGTGAGGACACGGAAGAGGAAAATGCAACAT Direct Gain 0 0.954030539854531 0 0.704437553882599 prediction 0.908061079709062 Functional Gain - OR5H1 ENSG00000231192 CDS Human protein_coding chr3:97851543 chr3:97851543 nonsynonymous SNV 0.020 2 21 hm5C_associated_SNPs_131025 0 0 0 0 0 unknown 0 0.500232223036063 0.408875107765198 0.000464446072125257 hm5C_site_51083 DeepMRMD:0.408875107765198;iRNA_m5C:0.000464446072125257 51084 chr16 2815030 2815030 1 + T G UCEC 2815030 - 2815010 2815050 41 GTTGTTGAGCTCTGGGGATGATGGAGAACGACTCCTCGGCC GTTGTTGAGCTCTGGGGATGCTGGAGAACGACTCCTCGGCC Direct Gain 0 0.954027157714677 0 0.940789520740509 prediction 0.908054315429355 Functional Gain - SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2815030 chr16:2815030 nonsynonymous SNV 0.985 2 21 hm5C_associated_SNPs_131026 0 0 0 0 0 Nucleus 0 0.500229659336137 0.881579041481018 0.000459318672275 hm5C_site_51084 DeepMRMD:0.881579041481018;iRNA_m5C:0.000459318672275 51085 chr7 150772765 150772765 1 + T C UCEC 150772765 + 150772745 150772785 41 CTTTGGAATTTTCCTGTACATGGGAGTCACCTCCCTTAACG CTTTGGAATTTTCCTGTACACGGGAGTCACCTCCCTTAACG Direct Gain 0 0.954014918867132 0 0.73492294549942 prediction 0.908029837734263 Functional Gain - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150772765 chr7:150772765 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_131027 0 0 1 0 2 Ribosome 0 0.500231643921092 0.46984589099884 0.000463287842184856 hm5C_site_51085 DeepMRMD:0.46984589099884;iRNA_m5C:0.000463287842184856 51086 chr1 147381232 147381232 1 + G C LGG 147381232 + 147381212 147381252 41 TGGATAAGGAGGGTGAAAAAGAAGAGCCGCAGTCGGAGAAG TGGATAAGGAGGGTGAAAAACAAGAGCCGCAGTCGGAGAAG Direct Gain 0 0.954011734035251 0 0.762879550457001 prediction 0.908023468070502 Functional Gain - GJA8 ENSG00000121634 CDS Human protein_coding chr1:147381232 chr1:147381232 nonsynonymous SNV 0.970 1 21 hm5C_associated_SNPs_131028 0 0 0 0 0 unknown 0 0.500231643919345 0.525759100914002 0.00046328783869054 hm5C_site_51086 DeepMRMD:0.525759100914002;iRNA_m5C:0.00046328783869054 51087 chr16 88706400 88706400 1 + A G UCEC 88706400 - 88706380 88706420 41 GAAGGCAAAGGCCCCAGGTGTGGGGAGCCCCGAGCCGTCGC GAAGGCAAAGGCCCCAGGTGCGGGGAGCCCCGAGCCGTCGC Direct Gain 0 0.953957035073802 0 0.897395253181458 prediction 0.907914070147604 Functional Gain - IL17C ENSG00000124391 CDS Human protein_coding chr16:88706400 chr16:88706400 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_131029 0 0 0 0 0 exosome 0 0.500231643925736 0.794790506362916 0.00046328785147276 hm5C_site_51087 DeepMRMD:0.794790506362916;iRNA_m5C:0.00046328785147276 51088 chr19 51986547 51986547 1 + A G rs10426247 51986547 - 51986527 51986567 41 GAGGGGAGCTGCTGCACTCATGGGGGGCCTGGATCCTGACG GAGGGGAGCTGCTGCACTCACGGGGGGCCTGGATCCTGACG Direct Gain 0 0.953956367123749 0 0.962033987045288 prediction 0.907912734247498 Functional Gain - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51986547 chr19:51986547 nonsynonymous SNV 0.026 0 21 hm5C_associated_SNPs_131030 0 0 0 0 0 unknown 0 0.500231643921092 0.924067974090576 0.000463287842184856 hm5C_site_51088 DeepMRMD:0.924067974090576;iRNA_m5C:0.000463287842184856 51089 chr12 90102940 90102940 1 + C G rs528909427 90102940 - 90102920 90102960 41 CTTGCAGGCCACCCGGTGCAGACGGGGTCCCTGCCCGGAGC CTTGCAGGCCACCCGGTGCACACGGGGTCCCTGCCCGGAGC Direct Gain 0 0.953916304242255 0 0.544201731681824 prediction 0.907832608484511 Functional Gain - ATP2B1-AS1 ENSG00000271614 ncRNA_exonic Human lincRNA chr12:90102940 chr12:90102940 . . 0 21 hm5C_associated_SNPs_131031 0 0 1 0 0 unknown 0 0.500231650579569 0.0884034633636479 0.00046330115913773 hm5C_site_51089 DeepMRMD:0.0884034633636479;iRNA_m5C:0.00046330115913773 51090 chr9 18777070 18777070 1 + C G CESC 18777070 - 18777050 18777090 41 GCTCCCGGGCCGGGCCCGCTGAGCAGGTGTAGACGCCTGCA GCTCCCGGGCCGGGCCCGCTCAGCAGGTGTAGACGCCTGCA Direct Gain 0 0.953914894788227 0 0.744322419166565 prediction 0.907829789576454 Functional Gain - ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18777070 chr9:18777070 stopgain 0.283 0 21 hm5C_associated_SNPs_131032 0 0 0 0 0 Nucleus 0 0.500231643921092 0.48864483833313 0.000463287842184856 hm5C_site_51090 DeepMRMD:0.48864483833313;iRNA_m5C:0.000463287842184856 51091 chr2 7160800 7160800 1 + C G PAAD 7160800 - 7160780 7160820 41 AAAGGGTACCTGGTCTCCCCGGGGAGGAAGGTGATCGGCAT AAAGGGTACCTGGTCTCCCCCGGGAGGAAGGTGATCGGCAT Direct Gain 0 0.953897970944173 0 0.899581909179688 prediction 0.907795941888346 Functional Gain - RNF144A ENSG00000151692 CDS Human protein_coding chr2:7160800 chr2:7160800 synonymous SNV . 0 21 hm5C_associated_SNPs_131033 0 0 0 0 0 Nucleus 0 0.500231643921092 0.799163818359376 0.000463287842184856 hm5C_site_51091 DeepMRMD:0.799163818359376;iRNA_m5C:0.000463287842184856 51092 chr1 110754039 110754039 1 + C G rs559671892 110754039 - 110754019 110754059 41 GGCAGCGTCAGACGGGGGAGGGGGAGGAGACGAAGAGGAGG GGCAGCGTCAGACGGGGGAGCGGGAGGAGACGAAGAGGAGG Direct Gain 0 0.953880471699678 0 0.842224061489105 prediction 0.907760943399356 Functional Gain - KCNC4 ENSG00000116396 UTR5 Human protein_coding chr1:110754039 chr1:110754039 . . 0 21 hm5C_associated_SNPs_131034 0 0 0 0 0 Nucleus 0 0.500231643921092 0.68444812297821 0.000463287842184856 hm5C_site_51092 DeepMRMD:0.68444812297821;iRNA_m5C:0.000463287842184856 51093 chr12 6647075 6647075 1 + C G HNSC 6647075 - 6647055 6647095 41 GGGTGTCGCTGTTGAAGTCAGAGGAGACCACCTGGTGCTCA GGGTGTCGCTGTTGAAGTCACAGGAGACCACCTGGTGCTCA Direct Gain 0 0.95387949690908 0 0.813970029354095 prediction 0.907758993818159 Functional Gain - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647075 chr12:6647075 nonsynonymous SNV 0.055 2 21 hm5C_associated_SNPs_131035 0 0 0 0 0 Ribosome 0 0.500231643921092 0.62794005870819 0.000463287842184856 hm5C_site_51093 DeepMRMD:0.62794005870819;iRNA_m5C:0.000463287842184856 51094 chr11 610300 610300 1 + A G rs201244128 610300 - 610280 610320 41 GGGTTCCGGAAGCACGTGACTGGGAAAGGGCAGCTCGGAGA GGGTTCCGGAAGCACGTGACCGGGAAAGGGCAGCTCGGAGA Direct Gain 0 0.953876625008182 0 0.879054605960846 prediction 0.907753250016364 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:610300 chr11:610300 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131036 0 0 0 0 0 Nucleus 0 0.5002316439222 0.758109211921692 0.000463287844399307 hm5C_site_51094 DeepMRMD:0.758109211921692;iRNA_m5C:0.000463287844399307 51095 chr7 150696117 150696117 1 + A G SKCM 150696117 - 150696097 150696137 41 GGGGGCAGAAGGAAGAGTTCTGGGGGATCATCTGGGGCCTG GGGGGCAGAAGGAAGAGTTCCGGGGGATCATCTGGGGCCTG Direct Gain 0 0.953873871050229 0 0.943300902843475 prediction 0.907747742100458 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150696117 chr7:150696117 synonymous SNV . 0 21 hm5C_associated_SNPs_131037 0 0 0 0 0 chromatin 0 0.500231643526918 0.88660180568695 0.000463287053835471 hm5C_site_51095 DeepMRMD:0.88660180568695;iRNA_m5C:0.000463287053835471 51096 chr20 57769036 57769036 1 + C G LUAD 57769036 - 57769016 57769056 41 TGAGGCTGGGCTGGGAGAAAGAGGGGTCCCCAGTCCTGACC TGAGGCTGGGCTGGGAGAAACAGGGGTCCCCAGTCCTGACC Direct Gain 0 0.953870965549252 0 0.930406212806702 prediction 0.907741931098504 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57769036 chr20:57769036 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_131038 0 0 0 0 0 exosome 0 0.500231643921092 0.860812425613404 0.000463287842184856 hm5C_site_51096 DeepMRMD:0.860812425613404;iRNA_m5C:0.000463287842184856 51097 chr9 140130649 140130649 1 + C G rs554704709 140130649 - 140130629 140130669 41 AGGACAGTAACCAGGATGACGAGGAGCACCAGCCCCACCAG AGGACAGTAACCAGGATGACCAGGAGCACCAGCCCCACCAG Direct Gain 0 0.953843410733312 0 0.924439251422882 prediction 0.907686821466624 Functional Gain - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140130649 chr9:140130649 synonymous SNV . 0 21 hm5C_associated_SNPs_131039 0 0 1 0 0 exosome 0 0.500231599527127 0.848878502845764 0.000463199054254959 hm5C_site_51097 DeepMRMD:0.848878502845764;iRNA_m5C:0.000463199054254959 51098 chr6 32611968 32611968 1 + G C rs9273043 32611968 + 32611948 32611988 41 CCACTGGATTCGCCATCTCCGAGGAGAAACTCTCACAGAGG CCACTGGATTCGCCATCTCCCAGGAGAAACTCTCACAGAGG Direct Gain 0 0.95382889789435 0 0.95106029510498 prediction 0.9076577957887 Functional Gain - HLA-DQA1 ENSG00000196735 downstream Human protein_coding chr6:32611968 chr6:32611968 . . 0 21 hm5C_associated_SNPs_131040 0 0 0 0 0 exosome 0 0.500231643353879 0.90212059020996 0.00046328670775897 hm5C_site_51098 DeepMRMD:0.90212059020996;iRNA_m5C:0.00046328670775897 51099 chr11 71260023 71260023 1 + C G LUSC 71260023 - 71260003 71260043 41 GCTTACAGCAGCTGCACTGGGAGCAGTAGGGCTTGCAGCAG GCTTACAGCAGCTGCACTGGCAGCAGTAGGGCTTGCAGCAG Direct Gain 0 0.953803249177683 0 0.733211755752563 prediction 0.907606498355365 Functional Gain - KRTAP5-9 ENSG00000254997 CDS Human protein_coding chr11:71260023 chr11:71260023 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_131041 0 0 0 0 0 exosome 0 0.500231823439874 0.466423511505126 0.000463646879748758 hm5C_site_51099 DeepMRMD:0.466423511505126;iRNA_m5C:0.000463646879748758 51100 chr5 7757586 7757586 1 + C G HNSC 7757586 - 7757566 7757606 41 CTTCAAAAGCCACATGAGCAGGGGAGAGGCTTTTTTGCTGC CTTCAAAAGCCACATGAGCACGGGAGAGGCTTTTTTGCTGC Direct Gain 0 0.953780472848509 0 0.799056351184845 prediction 0.907560945697018 Functional Gain - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7757586 chr5:7757586 nonsynonymous SNV 0.838 0 21 hm5C_associated_SNPs_131042 0 0 0 0 0 exosome 0 0.500231643921092 0.59811270236969 0.000463287842183746 hm5C_site_51100 DeepMRMD:0.59811270236969;iRNA_m5C:0.000463287842183746 51101 chr10 73059358 73059358 1 + C G rs1060184 73059358 - 73059338 73059378 41 AGTTGCCGGGCTGAGGGTGGGGGGGTGGAGGGAGGGCCTCC AGTTGCCGGGCTGAGGGTGGCGGGGTGGAGGGAGGGCCTCC Direct Gain 0 0.953777480370172 0 0.936481356620789 prediction 0.907554960740345 Functional Gain - UNC5B ENSG00000107731 UTR3 Human protein_coding chr10:73059358 chr10:73059358 . . 0 21 hm5C_associated_SNPs_131043 0 0 0 0 0 nucleoplasm 0 0.500231643921119 0.872962713241578 0.000463287842238147 hm5C_site_51101 DeepMRMD:0.872962713241578;iRNA_m5C:0.000463287842238147 51102 chr20 32232380 32232380 1 + C G rs115506243 32232380 - 32232360 32232400 41 GATGTGGTTGCCGAGGTCTTGTCGAGGGCTGGGCTGGGCAC GATGTGGTTGCCGAGGTCTTCTCGAGGGCTGGGCTGGGCAC Direct Gain 0 0.953745368686949 0 0.938924431800842 prediction 0.907490737373898 Functional Gain - CBFA2T2 ENSG00000078699 CDS Human protein_coding chr20:32232380 chr20:32232380 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_131044 0 0 0 0 0 Nucleus 0 0.500231643929767 0.877848863601684 0.000463287859533201 hm5C_site_51102 DeepMRMD:0.877848863601684;iRNA_m5C:0.000463287859533201 51103 chr11 55322265 55322265 1 + T C UCEC 55322265 + 55322245 55322285 41 TTTGCTGAACACTTCTTTGCTGGGGTGGAGGTGATTGTCCT TTTGCTGAACACTTCTTTGCCGGGGTGGAGGTGATTGTCCT Direct Gain 0 0.953739406462571 0 0.889587044715881 prediction 0.907478812925142 Functional Gain - OR4C15 ENSG00000181939 CDS Human protein_coding chr11:55322265 chr11:55322265 synonymous SNV . 0 21 hm5C_associated_SNPs_131045 0 0 0 0 0 unknown 0 0.500231603760606 0.779174089431762 0.00046320752121165 hm5C_site_51103 DeepMRMD:0.779174089431762;iRNA_m5C:0.00046320752121165 51104 chr10 26223173 26223173 1 + C G rs188597967 26223173 - 26223153 26223193 41 AGGGGCGGGCAGGGGCAGCCGAGCAGGGGAAGAACTGGGCC AGGGGCGGGCAGGGGCAGCCCAGCAGGGGAAGAACTGGGCC Direct Gain 0 0.953718066794394 0 0.775470554828644 prediction 0.907436133588788 Functional Gain - MYO3A ENSG00000095777;ENSG00000226304 upstream Human other chr10:26223173 chr10:26223173 . . 0 21 hm5C_associated_SNPs_131046 1 0 0 0 0 exosome 0 0.500231643921092 0.550941109657288 0.000463287842184856 hm5C_site_51104 DeepMRMD:0.550941109657288;iRNA_m5C:0.000463287842184856 Nonsyndromic Hearing Loss, Recessive Nonsyndromic Hearing Loss, Recessive 51105 chrX 30269518 30269518 1 + A G STAD 30269518 - 30269498 30269538 41 CTCTCAAAGCCTCTTCATAATGGGATGGGAAGTCACGGGGA CTCTCAAAGCCTCTTCATAACGGGATGGGAAGTCACGGGGA Direct Gain 0 0.953716529186667 0 0.815179586410522 prediction 0.907433058373334 Functional Gain - MAGEB1 ENSG00000214107 CDS Human protein_coding chrX:30269518 chrX:30269518 nonsynonymous SNV 0.837 0 21 hm5C_associated_SNPs_131047 0 0 0 0 0 nucleolus 0 0.500231643915947 0.630359172821044 0.000463287831894421 hm5C_site_51105 DeepMRMD:0.630359172821044;iRNA_m5C:0.000463287831894421 51106 chr1 146714354 146714354 1 + A C rs147494800 146714354 + 146714334 146714374 41 GCGGGGCCTCTACCGGCCCGATGGAGCGCGCGGGCGCTACT GCGGGGCCTCTACCGGCCCGCTGGAGCGCGCGGGCGCTACT Direct Gain 0 0.953687347143955 0 0.858510434627533 prediction 0.907374694287911 Functional Gain - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146714354 chr1:146714354 nonsynonymous SNV 0.010 1 21 hm5C_associated_SNPs_131048 0 0 1 0 0 Ribosome 0 0.500231643921092 0.717020869255066 0.000463287842184856 hm5C_site_51106 DeepMRMD:0.717020869255066;iRNA_m5C:0.000463287842184856 51107 chr17 41477611 41477611 1 + G C STAD 41477611 + 41477591 41477631 41 ATGTGCAAGGCTGCAGCGCTGTGGACGGTCTGGGCCTGCAG ATGTGCAAGGCTGCAGCGCTCTGGACGGTCTGGGCCTGCAG Direct Gain 0 0.953671150669984 0 0.651462197303772 prediction 0.907342301339967 Functional Gain - ARL4D ENSG00000175906 CDS Human protein_coding chr17:41477611 chr17:41477611 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131049 0 0 0 0 0 Cytosol 0 0.500230735565478 0.302924394607544 0.000461471130956737 hm5C_site_51107 DeepMRMD:0.302924394607544;iRNA_m5C:0.000461471130956737 51108 chr17 20224652 20224652 1 + A C UCEC 20224652 + 20224632 20224672 41 GGTCTCCTGGGGTGGAGAAAAGCGGGGAGGGGCTGAGGGGT GGTCTCCTGGGGTGGAGAAACGCGGGGAGGGGCTGAGGGGT Direct Gain 0 0.953653786551698 0 0.791558027267456 prediction 0.907307573103396 Functional Gain - CCDC144CP ENSG00000154898 ncRNA_exonic Human transcribed_processed_pseudogene chr17:20224652 chr17:20224652 . . 0 21 hm5C_associated_SNPs_131050 0 0 0 0 0 unknown 0 0.500231643921092 0.583116054534912 0.000463287842184856 hm5C_site_51108 DeepMRMD:0.583116054534912;iRNA_m5C:0.000463287842184856 51109 chr10 76938897 76938897 1 + A C rs148068790 76938897 + 76938877 76938917 41 ATCACTTGAGCTCAGGTAAAAGAGACCAGCCTGGGCAACAA ATCACTTGAGCTCAGGTAAACGAGACCAGCCTGGGCAACAA Direct Gain 0 0.953653643758193 0 0.751828551292419 prediction 0.907307287516387 Functional Gain - SAMD8 ENSG00000156671 UTR3 Human protein_coding chr10:76938897 chr10:76938897 . . 0 21 hm5C_associated_SNPs_131051 0 0 1 0 0 chromatin 0 0.500231643921093 0.503657102584838 0.000463287842185078 hm5C_site_51109 DeepMRMD:0.503657102584838;iRNA_m5C:0.000463287842185078 51110 chr1 110883998 110883998 1 + T C COAD 110883998 + 110883978 110884018 41 CGTCATCTGGATAGGTCTCCTGAGAGTGACCGCCCACGAAA CGTCATCTGGATAGGTCTCCCGAGAGTGACCGCCCACGAAA Direct Gain 0 0.953641309880966 0 0.951790869235992 prediction 0.907282619761932 Functional Gain - RBM15 ENSG00000162775 CDS Human protein_coding chr1:110883998 chr1:110883998 synonymous SNV . 0 21 hm5C_associated_SNPs_131052 0 0 1 0 0 Nucleus 0 0.500231485071106 0.903581738471984 0.000462970142212304 hm5C_site_51110 DeepMRMD:0.903581738471984;iRNA_m5C:0.000462970142212304 51111 chr22 37362499 37362499 1 + A G rs150307502 37362499 - 37362479 37362519 41 GCACGAGAATTGCTTGAACCTGGGAGGGGGAGGTTGTGGTG GCACGAGAATTGCTTGAACCCGGGAGGGGGAGGTTGTGGTG Direct Gain 0 0.953634480585714 0 0.896612048149109 prediction 0.907268961171428 Functional Gain - LL22NC01-81G9.3 ENSG00000215403 ncRNA_exonic Human antisense chr22:37362499 chr22:37362499 . . 0 21 hm5C_associated_SNPs_131053 0 0 0 0 0 unknown 0 0.500231644029271 0.793224096298218 0.000463288058542011 hm5C_site_51111 DeepMRMD:0.793224096298218;iRNA_m5C:0.000463288058542011 51112 chr11 44135765 44135765 1 + G C BLCA 44135765 + 44135745 44135785 41 GCTGGTGGCGGCTTTTCTACGTGGACTTACCGGCAAGGCTA GCTGGTGGCGGCTTTTCTACCTGGACTTACCGGCAAGGCTA Direct Gain 0 0.953591772243218 0 0.724264442920685 prediction 0.907183544486435 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44135765 chr11:44135765 synonymous SNV . 0 21 hm5C_associated_SNPs_131054 0 0 1 0 1 Endoplasmic reticulum 0 0.500231643921055 0.44852888584137 0.000463287842109805 hm5C_site_51112 DeepMRMD:0.44852888584137;iRNA_m5C:0.000463287842109805 51113 chr20 4680302 4680302 1 + G C BLCA 4680302 + 4680282 4680322 41 TACATTTCGGCAGTGACTATGAGGACCGTTACTATCGTGAA TACATTTCGGCAGTGACTATCAGGACCGTTACTATCGTGAA Direct Gain 0 0.953587540901059 0 0.927941560745239 prediction 0.907175081802118 Functional Gain - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680302 chr20:4680302 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_131055 0 0 1 0 1 Ribosome 0 0.500231643921094 0.855883121490478 0.000463287842187077 hm5C_site_51113 DeepMRMD:0.855883121490478;iRNA_m5C:0.000463287842187077 51114 chr12 57573717 57573717 1 + C G BRCA 57573717 - 57573697 57573737 41 ACGCAGAGGGTGGACGACAAGGCCATGGGGCTGCTCCAGGC ACGCAGAGGGTGGACGACAACGCCATGGGGCTGCTCCAGGC Direct Gain 0 0.953558370346789 0 0.877108991146088 prediction 0.907116740693579 Functional Gain - LRP1 ENSG00000123384 CDS Human protein_coding chr12:57573717 chr12:57573717 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_131056 0 0 0 0 0 Exosome 0 0.500231643920985 0.754217982292176 0.000463287841969473 hm5C_site_51114 DeepMRMD:0.754217982292176;iRNA_m5C:0.000463287841969473 51115 chr1 110527620 110527620 1 + A C rs536442460 110527620 + 110527600 110527640 41 CGGGCAGGCGGGCGGGCGCCAGAGGGGGAAAGAGGCGGGGG CGGGCAGGCGGGCGGGCGCCCGAGGGGGAAAGAGGCGGGGG Direct Gain 0 0.953536521935087 0 0.873738408088684 prediction 0.907073043870174 Functional Gain - AHCYL1 ENSG00000168710 UTR5 Human protein_coding chr1:110527620 chr1:110527620 . . 0 21 hm5C_associated_SNPs_131057 0 0 1 0 0 Ribosome 0 0.500230576507815 0.747476816177368 0.000461153015629101 hm5C_site_51115 DeepMRMD:0.747476816177368;iRNA_m5C:0.000461153015629101 51116 chr19 1000814 1000814 1 + C G rs554367291 1000814 - 1000794 1000834 41 CGCCGCAGCAGGCTGAGCACGGGGGTCTCGGTGGCCGCCGC CGCCGCAGCAGGCTGAGCACCGGGGTCTCGGTGGCCGCCGC Direct Gain 0 0.953529827859584 0 0.98086029291153 prediction 0.907059655719168 Functional Gain - GRIN3B ENSG00000116032 CDS Human protein_coding chr19:1000814 chr19:1000814 synonymous SNV . 0 21 hm5C_associated_SNPs_131058 0 0 0 0 0 chromatin 0 0.500231643891265 0.96172058582306 0.000463287782530575 hm5C_site_51116 DeepMRMD:0.96172058582306;iRNA_m5C:0.000463287782530575 51117 chr19 11558533 11558533 1 + C G rs201537803 11558533 - 11558513 11558553 41 CAGCAGGGCTGGCCGGCTGCGGGGGTGACAGTGGCGGTGGG CAGCAGGGCTGGCCGGCTGCCGGGGTGACAGTGGCGGTGGG Direct Gain 0 0.953519477724532 0 0.951013743877411 prediction 0.907038955449063 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11558533 chr19:11558533 nonsynonymous SNV 0.020 0 21 hm5C_associated_SNPs_131059 0 0 0 0 0 Nucleus 0 0.500231643920579 0.902027487754822 0.000463287841157678 hm5C_site_51117 DeepMRMD:0.902027487754822;iRNA_m5C:0.000463287841157678 51118 chr7 72417116 72417116 1 + C G rs542885402 72417116 - 72417096 72417136 41 CCTCCAGCGACGACGGTCTCGGGGAAAGGTGGAAGGGGCGC CCTCCAGCGACGACGGTCTCCGGGAAAGGTGGAAGGGGCGC Direct Gain 0 0.953477010855374 0 0.880321860313416 prediction 0.906954021710748 Functional Gain - POM121 ENSG00000196313 UTR3 Human protein_coding chr7:72417116 chr7:72417116 . . 0 21 hm5C_associated_SNPs_131060 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643929912 0.760643720626832 0.000463287859823858 hm5C_site_51118 DeepMRMD:0.760643720626832;iRNA_m5C:0.000463287859823858 51119 chr5 140870222 140870222 1 + T G SKCM 140870222 - 140870202 140870242 41 AGGCAGCCACAGTGCAAAGAAGGGAGCCCGGAGGCCGGTTT AGGCAGCCACAGTGCAAAGACGGGAGCCCGGAGGCCGGTTT Direct Gain 0 0.953455206714312 0 0.849262714385986 prediction 0.906910413428624 Functional Gain - PCDHGC5 ENSG00000240764 CDS Human protein_coding chr5:140870222 chr5:140870222 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_131061 0 0 0 0 0 exosome 0 0.500231643921114 0.698525428771972 0.000463287842228599 hm5C_site_51119 DeepMRMD:0.698525428771972;iRNA_m5C:0.000463287842228599 51120 chrX 67938217 67938217 1 + A G rs748462309 67938217 - 67938197 67938237 41 GCTGGGGCCGGGGCCGGGGCTGGGGCCGGGGCCTCAGCCTC GCTGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCTCAGCCTC Direct Gain 0 0.953379341373187 0 0.911088287830353 prediction 0.906758682746374 Functional Gain - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67938217 chrX:67938217 synonymous SNV . 0 21 hm5C_associated_SNPs_131062 0 0 0 0 0 chromatin 0 0.500231643920992 0.822176575660706 0.00046328784198435 hm5C_site_51120 DeepMRMD:0.822176575660706;iRNA_m5C:0.00046328784198435 51121 chr4 107268813 107268813 1 + T C UCEC 107268813 + 107268793 107268833 41 GTGAAAGGGAAGGGAGTATGTAGGGCTCAAACCATGAGCAA GTGAAAGGGAAGGGAGTATGCAGGGCTCAAACCATGAGCAA Direct Gain 0 0.953374435000884 0 0.765982270240784 prediction 0.906748870001768 Functional Gain - AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107268813 chr4:107268813 synonymous SNV . 0 21 hm5C_associated_SNPs_131063 0 0 1 0 0 Ribosome 0 0.500231643921027 0.531964540481568 0.000463287842054072 hm5C_site_51121 DeepMRMD:0.531964540481568;iRNA_m5C:0.000463287842054072 51122 chr20 36573330 36573330 1 + A C rs11550660 36573330 + 36573310 36573350 41 CTGTCACACGGCGAGTCAGAAGGGAGGGGCCTTTCCCTCGG CTGTCACACGGCGAGTCAGACGGGAGGGGCCTTTCCCTCGG Direct Gain 0 0.953349845390719 0 0.898575782775879 prediction 0.906699690781438 Functional Gain - VSTM2L ENSG00000132821 UTR3 Human protein_coding chr20:36573330 chr20:36573330 . . 0 21 hm5C_associated_SNPs_131064 0 0 1 0 0 exosome 0 0.500231678088759 0.797151565551758 0.000463356177517582 hm5C_site_51122 DeepMRMD:0.797151565551758;iRNA_m5C:0.000463356177517582 51123 chrX 37028425 37028425 1 + A G ACC 37028425 - 37028405 37028445 41 GAGATGGGACACTCCAGTATTGGGAGGCTCCGGGCGGAGAC GAGATGGGACACTCCAGTATCGGGAGGCTCCGGGCGGAGAC Direct Gain 0 0.953332881839059 0 0.923603236675262 prediction 0.906665763678118 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37028425 chrX:37028425 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131065 0 0 0 0 0 unknown 0 0.500231643931039 0.847206473350524 0.00046328786207761 hm5C_site_51123 DeepMRMD:0.847206473350524;iRNA_m5C:0.00046328786207761 51124 chr6 159653694 159653694 1 + C G BLCA 159653694 - 159653674 159653714 41 CATGGGGTGGAGAAAGTCTTGAGGGTGGGGCTGAGGCACTG CATGGGGTGGAGAAAGTCTTCAGGGTGGGGCTGAGGCACTG Direct Gain 0 0.95332739032846 0 0.910748958587646 prediction 0.906654780656919 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159653694 chr6:159653694 stopgain 0.004 0 21 hm5C_associated_SNPs_131066 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921094 0.821497917175292 0.000463287842187965 hm5C_site_51124 DeepMRMD:0.821497917175292;iRNA_m5C:0.000463287842187965 51125 chr4 154387528 154387528 1 + G C rs191995605 154387528 + 154387508 154387548 41 CGGCGAGCGCGGCGAGCAACGGAGAGGAGCGCGAGCAGCAG CGGCGAGCGCGGCGAGCAACCGAGAGGAGCGCGAGCAGCAG Direct Gain 0 0.953325059714525 0 0.933601140975952 prediction 0.906650119429049 Functional Gain - TMEM131L ENSG00000121210 UTR5 Human protein_coding chr4:154387528 chr4:154387528 . . 0 21 hm5C_associated_SNPs_131067 0 0 0 0 0 Nucleus 0 0.500231643921097 0.867202281951904 0.000463287842194404 hm5C_site_51125 DeepMRMD:0.867202281951904;iRNA_m5C:0.000463287842194404 51126 chr15 35270996 35270996 1 + C G rs7165312 35270996 - 35270976 35271016 41 ATTTTTGGTATCTGTGGGTTGGGGGGACGGTCCAGGAACCA ATTTTTGGTATCTGTGGGTTCGGGGGACGGTCCAGGAACCA Direct Gain 0 0.953317260267654 0 0.866086602210999 prediction 0.906634520535308 Functional Gain - ZNF770 ENSG00000212768;ENSG00000198146 UTR5;UTR3 Human other chr15:35270996 chr15:35270996 . . 0 21 hm5C_associated_SNPs_131068 0 0 1 0 0 Ribosome 0 0.500231643921092 0.732173204421998 0.000463287842184856 hm5C_site_51126 DeepMRMD:0.732173204421998;iRNA_m5C:0.000463287842184856 51127 chr5 175530289 175530289 1 + G C KIRC 175530289 + 175530269 175530309 41 ACGGCGAGGAGGAGGACCCAGAGGAGGTGAAGGTCAGGCCA ACGGCGAGGAGGAGGACCCACAGGAGGTGAAGGTCAGGCCA Direct Gain 0 0.95329452515508 0 0.899239182472229 prediction 0.906589050310159 Functional Gain - FAM153B ENSG00000182230 CDS Human protein_coding chr5:175530289 chr5:175530289 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_131069 0 0 0 0 2 exosome 0 0.500231643921092 0.798478364944458 0.000463287842184856 hm5C_site_51127 DeepMRMD:0.798478364944458;iRNA_m5C:0.000463287842184856 51128 chr11 117280388 117280388 1 + T G STAD 117280388 - 117280368 117280408 41 GCTGGCTGCTGATCTGCCGGAGGGAGTGGCTAAGCCCGTGG GCTGGCTGCTGATCTGCCGGCGGGAGTGGCTAAGCCCGTGG Direct Gain 0 0.953280531724512 0 0.896572947502136 prediction 0.906561063449024 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117280388 chr11:117280388 nonsynonymous SNV 0.025 3 21 hm5C_associated_SNPs_131070 0 0 0 0 0 Cytosol 0 0.500231643921093 0.793145895004272 0.000463287842185078 hm5C_site_51128 DeepMRMD:0.793145895004272;iRNA_m5C:0.000463287842185078 51129 chr19 45762390 45762390 1 + T C STAD 45762390 + 45762370 45762410 41 TACCGCCTGCTGAGGACCATTGGGAAGGGCAACTTTGCCAA TACCGCCTGCTGAGGACCATCGGGAAGGGCAACTTTGCCAA Direct Gain 0 0.953265907681195 0 0.961034834384918 prediction 0.90653181536239 Functional Gain - MARK4 ENSG00000007047 CDS Human protein_coding chr19:45762390 chr19:45762390 synonymous SNV . 0 21 hm5C_associated_SNPs_131071 0 0 1 0 1 Nucleus 0 0.500231644765 0.922069668769836 0.000463289529999633 hm5C_site_51129 DeepMRMD:0.922069668769836;iRNA_m5C:0.000463289529999633 51130 chr7 44841888 44841888 1 + T C rs7784201 44841888 + 44841868 44841908 41 CTCCTGAGTAGCTGGGATAATGGGCGTGTGCCACCATGCCC CTCCTGAGTAGCTGGGATAACGGGCGTGTGCCACCATGCCC Direct Gain 0 0.953262446375181 0 0.800806999206543 prediction 0.906524892750362 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44841888 chr7:44841888 . . 0 21 hm5C_associated_SNPs_131072 0 0 1 0 0 Ribosome 0 0.500231643921092 0.601613998413086 0.000463287842184856 hm5C_site_51130 DeepMRMD:0.601613998413086;iRNA_m5C:0.000463287842184856 51131 chr19 16060284 16060284 1 + T C LIHC 16060284 + 16060264 16060304 41 CTGGGCTGGTGGCTCAGTCATGGGGATGATGGTGACAACGA CTGGGCTGGTGGCTCAGTCACGGGGATGATGGTGACAACGA Direct Gain 0 0.953227413625622 0 0.797240197658539 prediction 0.906454827251244 Functional Gain - OR10H4 ENSG00000176231 CDS Human protein_coding chr19:16060284 chr19:16060284 nonsynonymous SNV 0.923 0 21 hm5C_associated_SNPs_131073 0 0 0 0 0 unknown 0 0.500230568564349 0.594480395317078 0.000461137128697109 hm5C_site_51131 DeepMRMD:0.594480395317078;iRNA_m5C:0.000461137128697109 51132 chr20 42695431 42695431 1 + A G PAAD 42695431 - 42695411 42695451 41 AGTCCCCGCTGCTGGTGGGGTTGGATGGGCCAGGTGAGCAG AGTCCCCGCTGCTGGTGGGGCTGGATGGGCCAGGTGAGCAG Direct Gain 0 0.95322399514411 0 0.789762437343597 prediction 0.90644799028822 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695431 chr20:42695431 nonsynonymous SNV 0.944 0 21 hm5C_associated_SNPs_131074 0 0 0 0 0 exosome 0 0.500231603457628 0.579524874687194 0.00046320691525592 hm5C_site_51132 DeepMRMD:0.579524874687194;iRNA_m5C:0.00046320691525592 51133 chr19 806430 806430 1 + C G rs199836672 806430 - 806410 806450 41 GCCAGGGGGGCCAGGGCGCCGTGGACGTTCGGAACGGAAAG GCCAGGGGGGCCAGGGCGCCCTGGACGTTCGGAACGGAAAG Direct Gain 0 0.953221667463017 0 0.75464916229248 prediction 0.906443334926034 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806430 chr19:806430 nonsynonymous SNV 0.040 0 21 hm5C_associated_SNPs_131075 0 0 0 0 0 Cytosol 0 0.500231644106871 0.50929832458496 0.000463288213742974 hm5C_site_51133 DeepMRMD:0.50929832458496;iRNA_m5C:0.000463288213742974 51134 chr6 54735391 54735391 1 + T C STAD 54735391 + 54735371 54735411 41 ATATGTGATGCCCGGACTCTTAGGGGGCACCCATATAGATC ATATGTGATGCCCGGACTCTCAGGGGGCACCCATATAGATC Direct Gain 0 0.953210080148749 0 0.892041444778442 prediction 0.906420160297498 Functional Gain - FAM83B ENSG00000168143 CDS Human protein_coding chr6:54735391 chr6:54735391 nonsynonymous SNV 0.969 0 21 hm5C_associated_SNPs_131076 0 0 0 0 1 exosome 0 0.500231643921092 0.784082889556884 0.000463287842184856 hm5C_site_51134 DeepMRMD:0.784082889556884;iRNA_m5C:0.000463287842184856 51135 chr1 25688137 25688137 1 + A C rs28667288 25688137 + 25688117 25688157 41 AGGCTCCCCACCTCTGCAAGATGGGATACACTCTTCAGGAC AGGCTCCCCACCTCTGCAAGCTGGGATACACTCTTCAGGAC Direct Gain 0 0.953203643709341 0 0.648727178573608 prediction 0.906407287418681 Functional Gain - TMEM50A ENSG00000183726 UTR3 Human protein_coding chr1:25688137 chr1:25688137 . . 0 21 hm5C_associated_SNPs_131077 0 0 1 0 0 Ribosome 0 0.500231643940596 0.297454357147216 0.000463287881191432 hm5C_site_51135 DeepMRMD:0.297454357147216;iRNA_m5C:0.000463287881191432 51136 chr11 60785395 60785395 1 + T G rs148566267 60785395 - 60785375 60785415 41 AGAAAACACCTGGGGGTTCCATGGAGGCAGCTTGCTTTTGG AGAAAACACCTGGGGGTTCCCTGGAGGCAGCTTGCTTTTGG Direct Gain 0 0.953187317452162 0 0.830837428569794 prediction 0.906374634904324 Functional Gain - CD6 ENSG00000013725 CDS Human protein_coding chr11:60785395 chr11:60785395 nonsynonymous SNV 0.371 3 21 hm5C_associated_SNPs_131078 0 0 0 0 0 exosome 0 0.500231643921092 0.661674857139588 0.000463287842184856 hm5C_site_51136 DeepMRMD:0.661674857139588;iRNA_m5C:0.000463287842184856 51137 chr1 33237239 33237239 1 + C G rs114127179 33237239 - 33237219 33237259 41 TCTGCAAAGCAGTAGCTGAGGAGGACGAAGCAGCCGGGGAG TCTGCAAAGCAGTAGCTGAGCAGGACGAAGCAGCCGGGGAG Direct Gain 0 0.953186866184055 0 0.565075993537903 prediction 0.90637373236811 Functional Gain - KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33237239 chr1:33237239 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_131079 0 0 1 0 0 Ribosome 0 0.500231643940594 0.130151987075806 0.000463287881187879 hm5C_site_51137 DeepMRMD:0.130151987075806;iRNA_m5C:0.000463287881187879 51138 chr14 20665689 20665689 1 + C G GBM 20665689 - 20665669 20665709 41 ACAACAGTGAAGAGCACAAAGAGGAGGATCTGCCCCTCCCT ACAACAGTGAAGAGCACAAACAGGAGGATCTGCCCCTCCCT Direct Gain 0 0.953183011818835 0 0.940533816814423 prediction 0.90636602363767 Functional Gain - OR11G2 ENSG00000196832 CDS Human protein_coding chr14:20665689 chr14:20665689 synonymous SNV . 0 21 hm5C_associated_SNPs_131080 0 0 0 0 0 unknown 0 0.500231267000626 0.881067633628846 0.000462534001251846 hm5C_site_51138 DeepMRMD:0.881067633628846;iRNA_m5C:0.000462534001251846 51139 chr7 142561841 142561841 1 + G C LUAD 142561841 + 142561821 142561861 41 ATTGGTTGCAGACACACTTTGTGGAGCGGCGCGGGGCCCAG ATTGGTTGCAGACACACTTTCTGGAGCGGCGCGGGGCCCAG Direct Gain 0 0.953164984035327 0 0.920938432216644 prediction 0.906329968070653 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561841 chr7:142561841 nonsynonymous SNV 0.991 1 21 hm5C_associated_SNPs_131081 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643920783 0.841876864433288 0.000463287841565796 hm5C_site_51139 DeepMRMD:0.841876864433288;iRNA_m5C:0.000463287841565796 51140 chr4 186069703 186069703 1 + T C rs565400128 186069703 + 186069683 186069723 41 GAAATGGGGGGAGGGAGTGGTAGGAGATGGAGGCTTTGAAA GAAATGGGGGGAGGGAGTGGCAGGAGATGGAGGCTTTGAAA Direct Gain 0 0.953129558097209 0 0.907398700714111 prediction 0.906259116194418 Functional Gain - SLC25A4 ENSG00000151729 UTR3 Human protein_coding chr4:186069703 chr4:186069703 . . 0 21 hm5C_associated_SNPs_131082 0 0 0 0 0 Cytosol 0 0.500231643916758 0.814797401428222 0.000463287833516013 hm5C_site_51140 DeepMRMD:0.814797401428222;iRNA_m5C:0.000463287833516013 51141 chr19 36123994 36123994 1 + C G BLCA 36123994 - 36123974 36124014 41 GGCGGGGGCCGGCTGCTGCAGAGGAGAGAGCGGAATCTGTC GGCGGGGGCCGGCTGCTGCACAGGAGAGAGCGGAATCTGTC Direct Gain 0 0.953117726660157 0 0.735653221607208 prediction 0.906235453320315 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36123994 chr19:36123994 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_131083 0 0 0 0 0 Ribosome 0 0.500231643916012 0.471306443214416 0.000463287832024983 hm5C_site_51141 DeepMRMD:0.471306443214416;iRNA_m5C:0.000463287832024983 51142 chr4 88537378 88537378 1 + T C rs111205184 88537378 + 88537358 88537398 41 GATAGCAGCGACAGCAGTGATAGCAGTGACAGCAGCGACAG GATAGCAGCGACAGCAGTGACAGCAGTGACAGCAGCGACAG Direct Gain 0 0.953093920883917 0 0.512251555919647 prediction 0.906187841767835 Functional Gain - DSPP ENSG00000152591 CDS Human protein_coding chr4:88537378 chr4:88537378 synonymous SNV . 0 21 hm5C_associated_SNPs_131084 0 0 0 0 0 exosome 0 0.500231736622825 0.024503111839294 0.000463473245649437 hm5C_site_51142 DeepMRMD:0.024503111839294;iRNA_m5C:0.000463473245649437 51143 chr1 48705022 48705022 1 + T C STAD 48705022 + 48705002 48705042 41 CTGGGGCCTCGTGTTTGGCCTGGGAGTGGGGCTTCTGCGTA CTGGGGCCTCGTGTTTGGCCCGGGAGTGGGGCTTCTGCGTA Direct Gain 0 0.953092606375263 0 0.481518119573593 prediction 0.906185212750526 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48705022 chr1:48705022 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_131085 0 0 1 0 0 nucleus 0 0.500231643936098 0 0.000463287872195295 hm5C_site_51143 DeepMRMD:0;iRNA_m5C:0.000463287872195295 51144 chrX 153688767 153688767 1 + A G LGG 153688767 - 153688747 153688787 41 GTGGGCACACACGCGCATGCTGGGGGGCGGGTAGCAGCGAG GTGGGCACACACGCGCATGCCGGGGGGCGGGTAGCAGCGAG Direct Gain 0 0.953083112814311 0 0.86675351858139 prediction 0.906166225628622 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153688767 chrX:153688767 nonsynonymous SNV 0.995 1 21 hm5C_associated_SNPs_131086 0 0 0 0 0 Endoplasmic reticulum 0 0.50023164392109 0.73350703716278 0.000463287842179305 hm5C_site_51144 DeepMRMD:0.73350703716278;iRNA_m5C:0.000463287842179305 51145 chr19 13059132 13059132 1 + G C BLCA 13059132 + 13059112 13059152 41 GAGAGGACAAGAGCCCATCAGAGGAATCCGCCCCCACGACG GAGAGGACAAGAGCCCATCACAGGAATCCGCCCCCACGACG Direct Gain 0 0.953077785465769 0 0.856603622436523 prediction 0.906155570931538 Functional Gain - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059132 chr19:13059132 nonsynonymous SNV 0.590 0 21 hm5C_associated_SNPs_131087 0 0 1 0 0 Ribosome 0 0.500231639008433 0.713207244873046 0.000463278016865853 hm5C_site_51145 DeepMRMD:0.713207244873046;iRNA_m5C:0.000463278016865853 51146 chr3 45046805 45046805 1 + G C LUSC 45046805 + 45046785 45046825 41 TACCAAGGGTTCGAGTTTTGGAGGATGAAGAGGGGTCGAAG TACCAAGGGTTCGAGTTTTGCAGGATGAAGAGGGGTCGAAG Direct Gain 0 0.953073246471123 0 0.789115786552429 prediction 0.906146492942246 Functional Gain - EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45046805 chr3:45046805 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_131088 0 0 1 0 1 Ribosome 0 0.500231643920857 0.578231573104858 0.000463287841714122 hm5C_site_51146 DeepMRMD:0.578231573104858;iRNA_m5C:0.000463287841714122 51147 chr4 17616293 17616293 1 + G C LGG 17616293 + 17616273 17616313 41 CAAACATGGCGGCTCCACTAGGGGGTATGTTTTCTGGGCAG CAAACATGGCGGCTCCACTACGGGGTATGTTTTCTGGGCAG Direct Gain 0 0.953071915277652 0 0.824283242225647 prediction 0.906143830555303 Functional Gain - MED28 ENSG00000118579 CDS Human protein_coding chr4:17616293 chr4:17616293 nonsynonymous SNV 0.014 2 21 hm5C_associated_SNPs_131089 0 0 1 0 0 Ribosome 0 0.500231643921092 0.648566484451294 0.000463287842184856 hm5C_site_51147 DeepMRMD:0.648566484451294;iRNA_m5C:0.000463287842184856 51148 chr12 110341781 110341781 1 + G C BLCA 110341781 + 110341761 110341801 41 GAGAAGATGAAGGAGGAGAAGAGGAGGAGTCTGGAGGCCCG GAGAAGATGAAGGAGGAGAACAGGAGGAGTCTGGAGGCCCG Direct Gain 0 0.953029553597626 0 0.654311895370483 prediction 0.906059107195252 Functional Gain - TCHP ENSG00000139437 CDS Human protein_coding chr12:110341781 chr12:110341781 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131090 0 0 1 0 1 Cytosol 0 0.500231643921092 0.308623790740966 0.000463287842184856 hm5C_site_51148 DeepMRMD:0.308623790740966;iRNA_m5C:0.000463287842184856 51149 chrX 128928172 128928172 1 + C G rs112353099 128928172 - 128928152 128928192 41 GCGACAGGGGTAGGTGGTGTGGGGGTGAGGAGGATTTGGAG GCGACAGGGGTAGGTGGTGTCGGGGTGAGGAGGATTTGGAG Direct Gain 0 0.953002454164803 0 0.984564185142517 prediction 0.906004908329607 Functional Gain - SASH3 ENSG00000122122 UTR3 Human protein_coding chrX:128928172 chrX:128928172 . . 0 21 hm5C_associated_SNPs_131091 0 0 0 0 0 exosome 0 0.500231643921092 0.969128370285034 0.000463287842184856 hm5C_site_51149 DeepMRMD:0.969128370285034;iRNA_m5C:0.000463287842184856 51150 chr6 29910871 29910871 1 + C G rs540533064 29910871 - 29910851 29910891 41 GGATCTCGGACCCGGAGACTGTGGGCGACCTGGCCCGTCCG GGATCTCGGACCCGGAGACTCTGGGCGACCTGGCCCGTCCG Direct Gain 0 0.952946386453741 0 0.807182788848877 prediction 0.905892772907483 Functional Gain - HLA-A ENSG00000206503 intronic Human protein_coding chr6:29910871 chr6:29910871 . . 0 21 hm5C_associated_SNPs_131092 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643892312 0.614365577697754 0.000463287784623789 hm5C_site_51150 DeepMRMD:0.614365577697754;iRNA_m5C:0.000463287784623789 51151 chr3 153840609 153840609 1 + C G BLCA 153840609 - 153840589 153840629 41 TCCACCATGCTGCGCACCTTGAGGAGTCTCTTGTGGGGCTC TCCACCATGCTGCGCACCTTCAGGAGTCTCTTGTGGGGCTC Direct Gain 0 0.952929558843486 0 0.917183995246887 prediction 0.905859117686971 Functional Gain - ARHGEF26 ENSG00000114790 CDS Human protein_coding chr3:153840609 chr3:153840609 synonymous SNV . 0 21 hm5C_associated_SNPs_131093 0 0 0 0 0 chromatin 0 0.500231643907496 0.834367990493774 0.00046328781499172 hm5C_site_51151 DeepMRMD:0.834367990493774;iRNA_m5C:0.00046328781499172 51152 chrX 56590478 56590478 1 + A C COAD 56590478 + 56590458 56590498 41 ACAGCTCGGTTCAGCAGTTTAAGGAAGCGATTTCGAAACGC ACAGCTCGGTTCAGCAGTTTCAGGAAGCGATTTCGAAACGC Direct Gain 0 0.952925076501149 0 0.87222158908844 prediction 0.905850153002299 Functional Gain - UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56590478 chrX:56590478 nonsynonymous SNV 0.989 5 21 hm5C_associated_SNPs_131094 0 0 1 0 0 nucleus 0 0.500231661192449 0.74444317817688 0.000463322384898879 hm5C_site_51152 DeepMRMD:0.74444317817688;iRNA_m5C:0.000463322384898879 51153 chr9 127975748 127975748 1 + T C UCEC 127975748 + 127975728 127975768 41 ACCTGACCGTATCTGGGTATTTGGAGGTGCCAACCAATCAG ACCTGACCGTATCTGGGTATCTGGAGGTGCCAACCAATCAG Direct Gain 0 0.952898572879402 0 0.660279631614685 prediction 0.905797145758803 Functional Gain - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127975748 chr9:127975748 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131095 0 0 1 0 2 Cytosol 0 0.500231643921092 0.32055926322937 0.000463287842184634 hm5C_site_51153 DeepMRMD:0.32055926322937;iRNA_m5C:0.000463287842184634 51154 chr2 55510906 55510906 1 + T C rs545367195 55510906 + 55510886 55510926 41 GTGAGATCTTGGCAAGTACATTGGAATACAAAACTGGCCGA GTGAGATCTTGGCAAGTACACTGGAATACAAAACTGGCCGA Direct Gain 0 0.952883733829015 0 0.399381995201111 prediction 0.90576746765803 Functional Gain - PRORSD1P ENSG00000162997 ncRNA_exonic Human transcribed_unitary_pseudogene chr2:55510906 chr2:55510906 . . 0 21 hm5C_associated_SNPs_131096 0 0 0 0 0 unknown 0 0.500231643921117 0 0.000463287842234816 hm5C_site_51154 DeepMRMD:0;iRNA_m5C:0.000463287842234816 51155 chr5 140773888 140773888 1 + C G rs11575959 140773888 - 140773868 140773908 41 CAGAGTTGATGGAGATATACGAGGACAGGGGCGCCCCCTGC CAGAGTTGATGGAGATATACCAGGACAGGGGCGCCCCCTGC Direct Gain 0 0.952881265735155 0 0.894856929779053 prediction 0.90576253147031 Functional Gain - PCDHGA8 ENSG00000253767 CDS Human protein_coding chr5:140773888 chr5:140773888 nonsynonymous SNV 0.010 3 21 hm5C_associated_SNPs_131097 0 0 0 0 0 exosome 0 0.500231643921085 0.789713859558106 0.000463287842169757 hm5C_site_51155 DeepMRMD:0.789713859558106;iRNA_m5C:0.000463287842169757 51156 chr14 57075932 57075932 1 + T C CESC 57075932 + 57075912 57075952 41 TTAATCACGCCCGGTGGACCTGGGGAGACCAGACAACACTG TTAATCACGCCCGGTGGACCCGGGGAGACCAGACAACACTG Direct Gain 0 0.952870409818492 0 0.91214919090271 prediction 0.905740819636983 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57075932 chr14:57075932 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131098 0 0 0 1 1 Endoplasmic reticulum 0 0.500231643923414 0.82429838180542 0.000463287846828031 hm5C_site_51156 DeepMRMD:0.82429838180542;iRNA_m5C:0.000463287846828031 51157 chr3 35780863 35780863 1 + G C LUSC 35780863 + 35780843 35780883 41 CCCTGAGCCGGCAGTCCTCGGGGGAGACTCCTGAACCCCCA CCCTGAGCCGGCAGTCCTCGCGGGAGACTCCTGAACCCCCA Direct Gain 0 0.952843257247706 0 0.9669109582901 prediction 0.905686514495412 Functional Gain - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35780863 chr3:35780863 nonsynonymous SNV 0.950 4 21 hm5C_associated_SNPs_131099 0 0 0 0 1 Nucleus 0 0.500231643921092 0.9338219165802 0.000463287842184856 hm5C_site_51157 DeepMRMD:0.9338219165802;iRNA_m5C:0.000463287842184856 51158 chr19 1045035 1045035 1 + C G BRCA 1045035 - 1045015 1045055 41 GCGACACCAGGGCTGCCTCTGAGGGTGCCGCCTCCAGCTTG GCGACACCAGGGCTGCCTCTCAGGGTGCCGCCTCCAGCTTG Direct Gain 0 0.952835191044892 0 0.957924723625183 prediction 0.905670382089783 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1045035 chr19:1045035 stopgain 0.167 0 21 hm5C_associated_SNPs_131100 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.915849447250366 0.000463287842184856 hm5C_site_51158 DeepMRMD:0.915849447250366;iRNA_m5C:0.000463287842184856 51159 chr1 151740666 151740666 1 + T C rs2495397 151740666 + 151740646 151740686 41 TCTGTGACCGTCGACTCTTCTTGGATATCCCATATCAGGCC TCTGTGACCGTCGACTCTTCCTGGATATCCCATATCAGGCC Direct Gain 0 0.952833439941783 0 0.833666622638702 prediction 0.905666879883566 Functional Gain - OAZ3 ENSG00000143450 CDS Human protein_coding chr1:151740666 chr1:151740666 synonymous SNV . 0 21 hm5C_associated_SNPs_131101 0 0 0 0 1 unknown 0 0.500231644559578 0.667333245277404 0.000463289119155386 hm5C_site_51159 DeepMRMD:0.667333245277404;iRNA_m5C:0.000463289119155386 51160 chr12 49742881 49742881 1 + C G HNSC 49742881 - 49742861 49742901 41 AGCAAAGCGAATGGGACTCAGAGGGGGTGTCACCCCTCTGG AGCAAAGCGAATGGGACTCACAGGGGGTGTCACCCCTCTGG Direct Gain 0 0.9528331973457 0 0.950595080852509 prediction 0.905666394691401 Functional Gain - DNAJC22 ENSG00000178401 CDS Human protein_coding chr12:49742881 chr12:49742881 nonsynonymous SNV 0.497 0 21 hm5C_associated_SNPs_131102 0 0 0 0 0 Ribosome 0 0.500231643921099 0.901190161705018 0.000463287842198179 hm5C_site_51160 DeepMRMD:0.901190161705018;iRNA_m5C:0.000463287842198179 51161 chr17 37082081 37082081 1 + A C rs573556 37082081 + 37082061 37082101 41 GCTCAGAAGGAAGGATGGAGATGAATGGCCGAGTGCCCTGC GCTCAGAAGGAAGGATGGAGCTGAATGGCCGAGTGCCCTGC Direct Gain 0 0.952795193884473 0 0.520785868167877 prediction 0.905590387768946 Functional Gain - LINC00672 ENSG00000263874 ncRNA_exonic Human protein_coding chr17:37082081 chr17:37082081 . . 0 21 hm5C_associated_SNPs_131103 0 0 0 0 1 exosome 0 0.500231643908484 0.041571736335754 0.000463287816967473 hm5C_site_51161 DeepMRMD:0.041571736335754;iRNA_m5C:0.000463287816967473 51162 chr20 42875988 42875988 1 + A G rs201862996 42875988 - 42875968 42876008 41 AGTTGGTGGGGGTCAGATTGTTGGGGGTCGCCATGACAGCC AGTTGGTGGGGGTCAGATTGCTGGGGGTCGCCATGACAGCC Direct Gain 0 0.952790171280941 0 0.858665764331818 prediction 0.905580342561881 Functional Gain - GDAP1L1 ENSG00000124194 CDS Human protein_coding chr20:42875988 chr20:42875988 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_131104 0 0 0 0 0 nucleoplasm 0 0.500231643921092 0.717331528663636 0.000463287842184856 hm5C_site_51162 DeepMRMD:0.717331528663636;iRNA_m5C:0.000463287842184856 51163 chr4 146403165 146403165 1 + A G rs13144151 146403165 - 146403145 146403185 41 TGGCGGCGCGCCCGTCCGTGTGGGAGCACGAGTGGCCGGGC TGGCGGCGCGCCCGTCCGTGCGGGAGCACGAGTGGCCGGGC Direct Gain 0 0.952786082826453 0 0.945795774459839 prediction 0.905572165652905 Functional Gain - SMAD1 ENSG00000170365 UTR5 Human protein_coding chr4:146403165 chr4:146403165 . . 0 21 hm5C_associated_SNPs_131105 0 0 0 0 0 Endoplasmic reticulum 0 0.500231323209003 0.891591548919678 0.00046264641800664 hm5C_site_51163 DeepMRMD:0.891591548919678;iRNA_m5C:0.00046264641800664 51164 chr4 38690408 38690408 1 + C G HNSC 38690408 - 38690388 38690428 41 CAGGCGAGGCTCTCCGGTGTGAGGACGGGAACTTCAGAGAG CAGGCGAGGCTCTCCGGTGTCAGGACGGGAACTTCAGAGAG Direct Gain 0 0.95277249568395 0 0.870513319969177 prediction 0.905544991367899 Functional Gain - KLF3 ENSG00000109787 CDS Human protein_coding chr4:38690408 chr4:38690408 stopgain 0.993 0 21 hm5C_associated_SNPs_131106 0 0 0 0 0 Cytosol 0 0.500231642830962 0.741026639938354 0.000463285661923107 hm5C_site_51164 DeepMRMD:0.741026639938354;iRNA_m5C:0.000463285661923107 51165 chr9 36036926 36036926 1 + T C rs555727081 36036926 + 36036906 36036946 41 CCTCGCGCGAGCGGCGGCGGTAGCGGCGGCAGCGGCTGCGG CCTCGCGCGAGCGGCGGCGGCAGCGGCGGCAGCGGCTGCGG Direct Gain 0 0.952741638792957 0 0.771941423416138 prediction 0.905483277585914 Functional Gain - RECK ENSG00000122707 UTR5 Human protein_coding chr9:36036926 chr9:36036926 . . 0 21 hm5C_associated_SNPs_131107 0 0 0 0 0 exosome 0 0.500231643921116 0.543882846832276 0.000463287842232818 hm5C_site_51165 DeepMRMD:0.543882846832276;iRNA_m5C:0.000463287842232818 51166 chr2 198570134 198570134 1 + T C rs529228852 198570134 + 198570114 198570154 41 GCGGCCGGTCTGCACCATGCTGCGAACGTCCGTCCTCCGCC GCGGCCGGTCTGCACCATGCCGCGAACGTCCGTCCTCCGCC Direct Gain 0 0.952729304162677 0 0.820395886898041 prediction 0.905458608325353 Functional Gain - MARS2 ENSG00000247626 CDS Human protein_coding chr2:198570134 chr2:198570134 nonsynonymous SNV 0.765 1 21 hm5C_associated_SNPs_131108 0 0 1 0 0 Ribosome 0 0.500231701155806 0.640791773796082 0.000463402311611461 hm5C_site_51166 DeepMRMD:0.640791773796082;iRNA_m5C:0.000463402311611461 51167 chr12 8926115 8926115 1 + T C UCEC 8926115 + 8926095 8926135 41 TCTAGATGTAGCTGGTATCATAGCAGACTATGCCGCCTCCC TCTAGATGTAGCTGGTATCACAGCAGACTATGCCGCCTCCC Direct Gain 0 0.952722978246477 0 0.93584805727005 prediction 0.905445956492955 Functional Gain - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8926115 chr12:8926115 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131109 0 0 1 0 0 chromatin 0 0.50023164435964 0.8716961145401 0.000463288719279475 hm5C_site_51167 DeepMRMD:0.8716961145401;iRNA_m5C:0.000463288719279475 51168 chr5 145890170 145890170 1 + A G UCEC 145890170 - 145890150 145890190 41 TCTCGTGGGCTCCGATGCTGTGGGAGGTGGGGGTGGACCCC TCTCGTGGGCTCCGATGCTGCGGGAGGTGGGGGTGGACCCC Direct Gain 0 0.952716538337332 0 0.920499920845032 prediction 0.905433076674664 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145890170 chr5:145890170 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_131110 0 0 0 0 0 Nucleus 0 0.500231643919021 0.840999841690064 0.00046328783804217 hm5C_site_51168 DeepMRMD:0.840999841690064;iRNA_m5C:0.00046328783804217 51169 chr2 29225502 29225502 1 + T G rs72786178 29225502 - 29225482 29225522 41 GTAGGGATGCTCTGGATGAGAGGCATCGGCCTGGGCACCCT GTAGGGATGCTCTGGATGAGCGGCATCGGCCTGGGCACCCT Direct Gain 0 0.9527155819196 0 0.735431969165802 prediction 0.9054311638392 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29225502 chr2:29225502 synonymous SNV . 0 21 hm5C_associated_SNPs_131111 0 0 0 0 0 unknown 0 0.500231643921114 0.470863938331604 0.000463287842227489 hm5C_site_51169 DeepMRMD:0.470863938331604;iRNA_m5C:0.000463287842227489 51170 chr1 248308871 248308871 1 + G C LUAD 248308871 + 248308851 248308891 41 TCTCATGAGACCCAAAATTTGTGGACTTATGACTGCCTTCT TCTCATGAGACCCAAAATTTCTGGACTTATGACTGCCTTCT Direct Gain 0 0.952687297409474 0 0.521964728832245 prediction 0.905374594818948 Functional Gain - OR2M5 ENSG00000162727 CDS Human protein_coding chr1:248308871 chr1:248308871 nonsynonymous SNV 0.002 3 21 hm5C_associated_SNPs_131112 0 0 0 0 0 unknown 0 0.500231616502994 0.04392945766449 0.000463233005988384 hm5C_site_51170 DeepMRMD:0.04392945766449;iRNA_m5C:0.000463233005988384 51171 chr19 52448704 52448704 1 + A G HNSC 52448704 - 52448684 52448724 41 GATAAACAAGGCATGACAAGTGGGAGAAAGCTTTCCCACAA GATAAACAAGGCATGACAAGCGGGAGAAAGCTTTCCCACAA Direct Gain 0 0.952669774888414 0 0.967905580997467 prediction 0.905339549776827 Functional Gain - ZNF613 ENSG00000176024 CDS Human protein_coding chr19:52448704 chr19:52448704 nonsynonymous SNV 0.981 1 21 hm5C_associated_SNPs_131113 0 0 0 0 0 nucleus 0 0.500231643921092 0.935811161994934 0.000463287842184856 hm5C_site_51171 DeepMRMD:0.935811161994934;iRNA_m5C:0.000463287842184856 51172 chr15 63000713 63000713 1 + A G rs199719989 63000713 - 63000693 63000733 41 GCACACAGGGGAGCTAATAGTGGGGCTCACAACCTGAAGTG GCACACAGGGGAGCTAATAGCGGGGCTCACAACCTGAAGTG Direct Gain 0 0.952648137079833 0 0.960329592227936 prediction 0.905296274159667 Functional Gain - TLN2 ENSG00000171914 CDS Human protein_coding chr15:63000713 chr15:63000713 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_131114 0 0 0 0 0 Nucleus 0 0.500231643846262 0.920659184455872 0.000463287692524128 hm5C_site_51172 DeepMRMD:0.920659184455872;iRNA_m5C:0.000463287692524128 51173 chr5 65440340 65440340 1 + G C CESC 65440340 + 65440320 65440360 41 TTTCCTTCCTAGGAGAAATCGAGGAGCTGCGGCTCTACCCC TTTCCTTCCTAGGAGAAATCCAGGAGCTGCGGCTCTACCCC Direct Gain 0 0.952626540340894 0 0.897748708724976 prediction 0.905253080681788 Functional Gain - SREK1 ENSG00000153914 CDS Human protein_coding chr5:65440340 chr5:65440340 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131115 0 0 1 0 1 Nucleus 0 0.500231644232093 0.795497417449952 0.000463288464186196 hm5C_site_51173 DeepMRMD:0.795497417449952;iRNA_m5C:0.000463288464186196 51174 chr15 80215978 80215978 1 + A G rs7176433 80215978 - 80215958 80215998 41 CGGTGCTTCGGGACCCGCGCTGGGGGAACCCTGGCGACGGG CGGTGCTTCGGGACCCGCGCCGGGGGAACCCTGGCGACGGG Direct Gain 0 0.952625169111125 0 0.952234983444214 prediction 0.905250338222249 Functional Gain - ST20-AS1 ENSG00000257028 CDS Human other chr15:80215978 chr15:80215978 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131116 0 0 1 0 0 unknown 0 0.500231653151045 0.904469966888428 0.000463306302090905 hm5C_site_51174 DeepMRMD:0.904469966888428;iRNA_m5C:0.000463306302090905 51175 chr7 99725796 99725796 1 + G C BLCA 99725796 + 99725776 99725816 41 AGCAGGAGCCGGTGGTCGGAGACGAGGAGCCCGCCCTGCAC AGCAGGAGCCGGTGGTCGGACACGAGGAGCCCGCCCTGCAC Direct Gain 0 0.95261893933729 0 0.765545845031738 prediction 0.905237878674579 Functional Gain - MBLAC1 ENSG00000214309 CDS Human protein_coding chr7:99725796 chr7:99725796 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_131117 0 0 0 0 0 chromatin 0 0.500231643909525 0.531091690063476 0.000463287819049141 hm5C_site_51175 DeepMRMD:0.531091690063476;iRNA_m5C:0.000463287819049141 51176 chr19 55179430 55179430 1 + C G LUAD 55179430 - 55179410 55179450 41 CATAGACACTGGGCTCAGCTGGAGAGGCCCCTTCCTGGGAT CATAGACACTGGGCTCAGCTCGAGAGGCCCCTTCCTGGGAT Direct Gain 0 0.952618798724727 0 0.825757265090942 prediction 0.905237597449453 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179430 chr19:55179430 nonsynonymous SNV 0.004 1 21 hm5C_associated_SNPs_131118 0 0 0 0 0 exosome 0 0.500231643921092 0.651514530181884 0.000463287842184856 hm5C_site_51176 DeepMRMD:0.651514530181884;iRNA_m5C:0.000463287842184856 51177 chr8 104427350 104427350 1 + G C LUSC 104427350 + 104427330 104427370 41 AGTACTGAGGGGGCAAGAACGGGGCACAGACACTACGTCAC AGTACTGAGGGGGCAAGAACCGGGCACAGACACTACGTCAC Direct Gain 0 0.952616963783972 0 0.889437913894653 prediction 0.905233927567943 Functional Gain - DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104427350 chr8:104427350 synonymous SNV . 0 21 hm5C_associated_SNPs_131119 0 0 0 0 0 Nucleus 0 0.500231643922539 0.778875827789306 0.00046328784507832 hm5C_site_51177 DeepMRMD:0.778875827789306;iRNA_m5C:0.00046328784507832 51178 chr3 183952099 183952099 1 + A G COAD 183952099 - 183952079 183952119 41 TGGTGGCTGCAGAGCTGGCATGAGGGGGGGCATCTGCCCGC TGGTGGCTGCAGAGCTGGCACGAGGGGGGGCATCTGCCCGC Direct Gain 0 0.952601048016295 0 0.9026939868927 prediction 0.90520209603259 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183952099 chr3:183952099 nonsynonymous SNV 0.991 1 21 hm5C_associated_SNPs_131120 0 0 0 0 0 exosome 0 0.500231643921304 0.8053879737854 0.000463287842608739 hm5C_site_51178 DeepMRMD:0.8053879737854;iRNA_m5C:0.000463287842608739 51179 chr1 63788790 63788790 1 + G C CESC 63788790 + 63788770 63788810 41 GCCAGACGGTGCTGACGGCCGAGGACGTGGACATCGATGTG GCCAGACGGTGCTGACGGCCCAGGACGTGGACATCGATGTG Direct Gain 0 0.952557426172459 0 0.480581313371658 prediction 0.905114852344918 Functional Gain - FOXD3 ENSG00000187140 CDS Human protein_coding chr1:63788790 chr1:63788790 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131121 0 0 0 0 0 exosome 0 0.500232009635795 0 0.000464019271590344 hm5C_site_51179 DeepMRMD:0;iRNA_m5C:0.000464019271590344 51180 chr20 62324319 62324319 1 + C G BLCA 62324319 - 62324299 62324339 41 TTCTTGGGGTCCTCAGCAAAGAGGGGGCCGAGACAGGCGGC TTCTTGGGGTCCTCAGCAAACAGGGGGCCGAGACAGGCGGC Direct Gain 0 0.952556778718776 0 0.920356512069702 prediction 0.905113557437551 Functional Gain - RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62324319 chr20:62324319 synonymous SNV . 0 21 hm5C_associated_SNPs_131122 0 0 0 0 0 chromatin 0 0.500231644052692 0.840713024139404 0.000463288105384319 hm5C_site_51180 DeepMRMD:0.840713024139404;iRNA_m5C:0.000463288105384319 51181 chr14 21167872 21167872 1 + T C UCEC 21167872 + 21167852 21167892 41 GATTGCAGGGACACAGGAAGTTCCAGGGCACCCAACTGCAG GATTGCAGGGACACAGGAAGCTCCAGGGCACCCAACTGCAG Direct Gain 0 0.952553508685254 0 0.798499941825867 prediction 0.905107017370508 Functional Gain - RNASE4 ENSG00000258818 CDS Human protein_coding chr14:21167872 chr14:21167872 synonymous SNV . 0 21 hm5C_associated_SNPs_131123 0 0 1 1 0 cytosol 0 0.500241562442353 0.596999883651734 0.000483124884706809 hm5C_site_51181 DeepMRMD:0.596999883651734;iRNA_m5C:0.000483124884706809 51182 chr1 248224863 248224863 1 + A C LUAD 248224863 + 248224843 248224883 41 TCATCTATAGCCTGAGGAACAAGGAGGTGATGGGGGCCCTG TCATCTATAGCCTGAGGAACCAGGAGGTGATGGGGGCCCTG Direct Gain 0 0.952528437683101 0 0.905749797821045 prediction 0.905056875366202 Functional Gain - OR2L3 ENSG00000198128 CDS Human protein_coding chr1:248224863 chr1:248224863 nonsynonymous SNV 0.013 2 21 hm5C_associated_SNPs_131124 0 0 0 0 0 unknown 0 0.500231643922021 0.81149959564209 0.000463287844042704 hm5C_site_51182 DeepMRMD:0.81149959564209;iRNA_m5C:0.000463287844042704 51183 chr9 136501639 136501639 1 + A G PRAD 136501639 - 136501619 136501659 41 CCGGGTCCAGGGGGATGTGATAGGGGAGGGGGCTCTCACGG CCGGGTCCAGGGGGATGTGACAGGGGAGGGGGCTCTCACGG Direct Gain 0 0.952525395054556 0 0.959238171577454 prediction 0.905050790109112 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136501639 chr9:136501639 nonsynonymous SNV 0.027 3 21 hm5C_associated_SNPs_131125 0 0 0 0 0 cytosol 0 0.500231643921103 0.918476343154908 0.000463287842206395 hm5C_site_51183 DeepMRMD:0.918476343154908;iRNA_m5C:0.000463287842206395 51184 chr19 30502138 30502138 1 + T C rs145276289 30502138 + 30502118 30502158 41 ATCAGGACGCCTGCAGACATTTACAGGTGGGAGGCGCTCAC ATCAGGACGCCTGCAGACATCTACAGGTGGGAGGCGCTCAC Direct Gain 0 0.952500068849996 0 0.812299251556396 prediction 0.905000137699993 Functional Gain - URI1 ENSG00000105176 CDS Human protein_coding chr19:30502138 chr19:30502138 synonymous SNV . 0 21 hm5C_associated_SNPs_131126 0 0 1 0 1 Cytosol 0 0.500231643925242 0.624598503112792 0.000463287850483551 hm5C_site_51184 DeepMRMD:0.624598503112792;iRNA_m5C:0.000463287850483551 51185 chr2 30863108 30863108 1 + A G rs12471868 30863108 - 30863088 30863128 41 GGATGTGGGGAGGGTGTCTATTGGATACCGGTGGACGTGAA GGATGTGGGGAGGGTGTCTACTGGATACCGGTGGACGTGAA Direct Gain 0 0.952492111550065 0 0.907443642616272 prediction 0.90498422310013 Functional Gain - LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30863108 chr2:30863108 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131127 0 0 0 0 0 Endoplasmic reticulum 0 0.50023164392109 0.814887285232544 0.000463287842179083 hm5C_site_51185 DeepMRMD:0.814887285232544;iRNA_m5C:0.000463287842179083 51186 chrX 10126434 10126434 1 + C G rs112523997 10126434 - 10126414 10126454 41 GGCAGGGAGGTGTGCGCGGGGTGGGGGGAAGACCCTGGAAG GGCAGGGAGGTGTGCGCGGGCTGGGGGGAAGACCCTGGAAG Direct Gain 0 0.95248677146709 0 0.665552020072937 prediction 0.90497354293418 Functional Gain - CLCN4 ENSG00000073464 UTR5 Human protein_coding chrX:10126434 chrX:10126434 . . 0 21 hm5C_associated_SNPs_131128 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.331104040145874 0.000463287842184856 hm5C_site_51186 DeepMRMD:0.331104040145874;iRNA_m5C:0.000463287842184856 51187 chr5 173416461 173416461 1 + T C UCEC 173416461 + 173416441 173416481 41 GCGGTGGCGGGCGTTCAGGGTGGCAGCGAGCTGCCCCTCGG GCGGTGGCGGGCGTTCAGGGCGGCAGCGAGCTGCCCCTCGG Direct Gain 0 0.952469815697194 0 0.460954934358597 prediction 0.904939631394388 Functional Gain - C5orf47 ENSG00000185056 CDS Human protein_coding chr5:173416461 chr5:173416461 synonymous SNV . 0 21 hm5C_associated_SNPs_131129 0 0 0 0 0 exosome 0 0.500231643918368 0 0.000463287836736992 hm5C_site_51187 DeepMRMD:0;iRNA_m5C:0.000463287836736992 51188 chr11 67192011 67192011 1 + A G COAD 67192011 - 67191991 67192031 41 GCCCATCGATGCCCAGGCCCTGGCAGAGGCCCAGCAGGCGG GCCCATCGATGCCCAGGCCCCGGCAGAGGCCCAGCAGGCGG Direct Gain 0 0.952452033364555 0 0.826778769493103 prediction 0.904904066729109 Functional Gain - CARNS1 ENSG00000172508 CDS Human protein_coding chr11:67192011 chr11:67192011 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131130 0 0 0 0 0 exosome 0 0.500231644700036 0.653557538986206 0.000463289400072453 hm5C_site_51188 DeepMRMD:0.653557538986206;iRNA_m5C:0.000463289400072453 51189 chr19 40478119 40478119 1 + G C HNSC 40478119 + 40478099 40478139 41 CCTTCCTGGGCCCTGAGCCTGAGGACCTGGAGGACCTGTAC CCTTCCTGGGCCCTGAGCCTCAGGACCTGGAGGACCTGTAC Direct Gain 0 0.952442924117939 0 0.924501299858093 prediction 0.904885848235878 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40478119 chr19:40478119 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_131131 0 0 1 0 2 Ribosome 0 0.500231643873089 0.849002599716186 0.000463287746178542 hm5C_site_51189 DeepMRMD:0.849002599716186;iRNA_m5C:0.000463287746178542 51190 chr1 161719734 161719734 1 + T C UCEC 161719734 + 161719714 161719754 41 CGTCGCGGAGCCAGATCACCTGAGGGAAGCGGGCATCACGG CGTCGCGGAGCCAGATCACCCGAGGGAAGCGGGCATCACGG Direct Gain 0 0.952415842553809 0 0.82866907119751 prediction 0.904831685107619 Functional Gain - DUSP12 ENSG00000081721 CDS Human protein_coding chr1:161719734 chr1:161719734 nonsynonymous SNV 0.607 4 21 hm5C_associated_SNPs_131132 0 0 1 0 0 Ribosome 0 0.500231644237607 0.65733814239502 0.000463288475214263 hm5C_site_51190 DeepMRMD:0.65733814239502;iRNA_m5C:0.000463288475214263 51191 chr7 150439848 150439848 1 + T C CESC 150439848 + 150439828 150439868 41 GCAGAGCTCCTGGCTGTGATTGAGAGGCTGGGGAGGGAGCG GCAGAGCTCCTGGCTGTGATCGAGAGGCTGGGGAGGGAGCG Direct Gain 0 0.952400713461276 0 0.93963885307312 prediction 0.904801426922552 Functional Gain - GIMAP1-GIMAP5;GIMAP5 ENSG00000196329 CDS Human protein_coding chr7:150439848 chr7:150439848 synonymous SNV . 0 21 hm5C_associated_SNPs_131133 0 0 0 0 0 unknown 0 0.500231643920968 0.87927770614624 0.000463287841935722 hm5C_site_51191 DeepMRMD:0.87927770614624;iRNA_m5C:0.000463287841935722 51192 chr5 133727613 133727613 1 + T C rs184299705 133727613 + 133727593 133727633 41 GCTGCAGTGAGCTGTGATTATGCCATTGCACTCCAGCCTGG GCTGCAGTGAGCTGTGATTACGCCATTGCACTCCAGCCTGG Direct Gain 0 0.952389546322412 0 0.80988472700119 prediction 0.904779092644823 Functional Gain - UBE2B ENSG00000119048 UTR3 Human protein_coding chr5:133727613 chr5:133727613 . . 0 21 hm5C_associated_SNPs_131134 0 0 0 0 0 Cytosol 0 0.500237562532599 0.61976945400238 0.000475125065197091 hm5C_site_51192 DeepMRMD:0.61976945400238;iRNA_m5C:0.000475125065197091 51193 chr2 272130 272130 1 + A G STAD 272130 - 272110 272150 41 CTGCCGGGCAACGTGGCTCATGGGAATGCCGTGCCTCTTCA CTGCCGGGCAACGTGGCTCACGGGAATGCCGTGCCTCTTCA Direct Gain 0 0.952380319025711 0 0.788273096084595 prediction 0.904760638051422 Functional Gain - ACP1 ENSG00000143727 CDS Human protein_coding chr2:272130 chr2:272130 nonsynonymous SNV 0.772 0 21 hm5C_associated_SNPs_131135 0 0 0 0 0 Ribosome 0 0.500231643919511 0.57654619216919 0.000463287839022275 hm5C_site_51193 DeepMRMD:0.57654619216919;iRNA_m5C:0.000463287839022275 51194 chr6 35048790 35048790 1 + A G LUAD 35048790 - 35048770 35048810 41 GACTCAGTGGGGATGACGTCTGGGAGAGCAAATCTTGGCAC GACTCAGTGGGGATGACGTCCGGGAGAGCAAATCTTGGCAC Direct Gain 0 0.95234471033539 0 0.935880661010742 prediction 0.904689420670781 Functional Gain - ANKS1A ENSG00000064999 CDS Human protein_coding chr6:35048790 chr6:35048790 nonsynonymous SNV 0.987 2 21 hm5C_associated_SNPs_131136 0 0 0 0 0 Cytosol 0 0.50023175184589 0.871761322021484 0.000463503691779055 hm5C_site_51194 DeepMRMD:0.871761322021484;iRNA_m5C:0.000463503691779055 51195 chr11 93517870 93517870 1 + A C CESC 93517870 + 93517850 93517890 41 GGAGGAGGCGGCGGGGACCGAGGGCGACGCGCAGGAGTGGC GGAGGAGGCGGCGGGGACCGCGGGCGACGCGCAGGAGTGGC Direct Gain 0 0.952327803239528 0 0.960577726364136 prediction 0.904655606479057 Functional Gain - MED17 ENSG00000042429 CDS Human protein_coding chr11:93517870 chr11:93517870 nonsynonymous SNV 0.469 0 21 hm5C_associated_SNPs_131137 0 0 1 0 1 Cytosol 0 0.500231643921092 0.921155452728272 0.000463287842184856 hm5C_site_51195 DeepMRMD:0.921155452728272;iRNA_m5C:0.000463287842184856 51196 chr7 101926783 101926783 1 + A G rs560440803 101926783 - 101926763 101926803 41 TACGGGGCATGGGGGGATCCTAGGAGAGCCCAAGAGGATCG TACGGGGCATGGGGGGATCCCAGGAGAGCCCAAGAGGATCG Direct Gain 0 0.952323879056073 0 0.875771105289459 prediction 0.904647758112145 Functional Gain - CUX1 ENSG00000257923 UTR3 Human protein_coding chr7:101926783 chr7:101926783 . . 0 21 hm5C_associated_SNPs_131138 0 0 0 0 0 Exosome 0 0.500231643921126 0.751542210578918 0.00046328784225258 hm5C_site_51196 DeepMRMD:0.751542210578918;iRNA_m5C:0.00046328784225258 51197 chr4 89311919 89311919 1 + T G STAD 89311919 - 89311899 89311939 41 GCCCCTCCGGCAGCCACCTGAGCCAGTGGGATCCCCTCCAG GCCCCTCCGGCAGCCACCTGCGCCAGTGGGATCCCCTCCAG Direct Gain 0 0.952320071443556 0 0.754164099693298 prediction 0.904640142887112 Functional Gain - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89311919 chr4:89311919 synonymous SNV . 0 21 hm5C_associated_SNPs_131139 0 0 0 0 0 Cytosol 0 0.500231643921092 0.508328199386596 0.000463287842184856 hm5C_site_51197 DeepMRMD:0.508328199386596;iRNA_m5C:0.000463287842184856 51198 chr19 6374915 6374915 1 + C G HNSC 6374915 - 6374895 6374935 41 GGGAGGGAGCGGCAGATCACGGAGATGCGCCGGCCCCGGGG GGGAGGGAGCGGCAGATCACCGAGATGCGCCGGCCCCGGGG Direct Gain 0 0.952319977563111 0 0.95406436920166 prediction 0.904639955126222 Functional Gain - ALKBH7 ENSG00000125652 CDS Human protein_coding chr19:6374915 chr19:6374915 synonymous SNV . 0 21 hm5C_associated_SNPs_131140 0 0 0 0 0 Ribosome 0 0.500231644983385 0.90812873840332 0.000463289966769143 hm5C_site_51198 DeepMRMD:0.90812873840332;iRNA_m5C:0.000463289966769143 51199 chr21 45547964 45547964 1 + C G CESC 45547964 - 45547944 45547984 41 TCGTTGAGCCGGAGGGCCATGAGGATGGCCCTGGTGAAGTC TCGTTGAGCCGGAGGGCCATCAGGATGGCCCTGGTGAAGTC Direct Gain 0 0.952298632478023 0 0.877260208129883 prediction 0.904597264956047 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45547964 chr21:45547964 synonymous SNV . 0 21 hm5C_associated_SNPs_131141 0 0 0 0 0 Nucleus 0 0.50023164423875 0.754520416259766 0.000463288477499324 hm5C_site_51199 DeepMRMD:0.754520416259766;iRNA_m5C:0.000463288477499324 51200 chr6 35791005 35791005 1 + T C rs201396239 35791005 + 35790985 35791025 41 TGCAGGGAGTGCTCAGTTGCTGGGGATGGGATCCAAGTCCA TGCAGGGAGTGCTCAGTTGCCGGGGATGGGATCCAAGTCCA Direct Gain 0 0.952290858384027 0 0.959478378295898 prediction 0.904581716768054 Functional Gain - LHFPL5 ENSG00000197753 UTR3 Human protein_coding chr6:35791005 chr6:35791005 . . 0 21 hm5C_associated_SNPs_131142 0 0 0 0 0 exosome 0 0.500231643921092 0.918956756591796 0.000463287842184856 hm5C_site_51200 DeepMRMD:0.918956756591796;iRNA_m5C:0.000463287842184856 51201 chr19 41265485 41265485 1 + C G rs77290177 41265485 - 41265465 41265505 41 CCCTGGACAGCCCCCACCACGGGGGTGGCTCCCCCGCCTTG CCCTGGACAGCCCCCACCACCGGGGTGGCTCCCCCGCCTTG Direct Gain 0 0.952286767060433 0 0.903064906597137 prediction 0.904573534120865 Functional Gain - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41265485 chr19:41265485 synonymous SNV . 0 21 hm5C_associated_SNPs_131143 0 0 0 0 0 Ribosome 0 0.500231643921092 0.806129813194274 0.000463287842184856 hm5C_site_51201 DeepMRMD:0.806129813194274;iRNA_m5C:0.000463287842184856 51202 chr19 47865911 47865911 1 + A G rs2547390 47865911 - 47865891 47865931 41 AGGGCCACCCTCCGAATTTCTGGGACGGGGTAGGGGGCGAA AGGGCCACCCTCCGAATTTCCGGGACGGGGTAGGGGGCGAA Direct Gain 0 0.952241385598459 0 0.845574378967285 prediction 0.904482771196919 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47865911 chr19:47865911 synonymous SNV . 0 21 hm5C_associated_SNPs_131144 0 0 0 0 0 Ribosome 0 0.500231643921092 0.69114875793457 0.000463287842184856 hm5C_site_51202 DeepMRMD:0.69114875793457;iRNA_m5C:0.000463287842184856 51203 chr1 3831232 3831232 1 + A G rs35241263 3831232 - 3831212 3831252 41 GGTCAGACAAAGGAGGAGGATGGGAGTCCCAGAGGACAGGC GGTCAGACAAAGGAGGAGGACGGGAGTCCCAGAGGACAGGC Direct Gain 0 0.952226374207455 0 0.704433739185333 prediction 0.904452748414909 Functional Gain - LINC01134 ENSG00000236423 ncRNA_exonic Human lincRNA chr1:3831232 chr1:3831232 . . 0 21 hm5C_associated_SNPs_131145 0 0 0 0 0 unknown 0 0.500231643921092 0.408867478370666 0.000463287842184856 hm5C_site_51203 DeepMRMD:0.408867478370666;iRNA_m5C:0.000463287842184856 51204 chr11 58391849 58391849 1 + G C CESC 58391849 + 58391829 58391869 41 TTGGAGATGGTGGTCTCTTTGAGAAGAAGCTGTGGGGCCTA TTGGAGATGGTGGTCTCTTTCAGAAGAAGCTGTGGGGCCTA Direct Gain 0 0.952210538269649 0 0.92942476272583 prediction 0.904421076539298 Functional Gain - CNTF ENSG00000242689 CDS Human protein_coding chr11:58391849 chr11:58391849 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131146 0 0 1 0 0 Cytosol 0 0.500231643921092 0.85884952545166 0.000463287842184856 hm5C_site_51204 DeepMRMD:0.85884952545166;iRNA_m5C:0.000463287842184856 51205 chr11 103907841 103907841 1 + T C rs535542747 103907841 + 103907821 103907861 41 CAGCCTCGTGTAGACTTCAGTGGCATTGCGGTGCCTGGGAC CAGCCTCGTGTAGACTTCAGCGGCATTGCGGTGCCTGGGAC Direct Gain 0 0.952159548249496 0 0.869318723678589 prediction 0.904319096498993 Functional Gain - DDI1 ENSG00000170967 CDS Human protein_coding chr11:103907841 chr11:103907841 synonymous SNV . 0 21 hm5C_associated_SNPs_131147 0 0 0 0 0 exosome 0 0.500231643921094 0.738637447357178 0.000463287842188409 hm5C_site_51205 DeepMRMD:0.738637447357178;iRNA_m5C:0.000463287842188409 51206 chr16 81942175 81942175 1 + A G rs75472618 81942175 - 81942155 81942195 41 AGAAGGACAGGGTGTAGTCATTGGGGAAGGTCTCGCTCTCC AGAAGGACAGGGTGTAGTCACTGGGGAAGGTCTCGCTCTCC Direct Gain 0 0.95215714382707 0 0.910785555839539 prediction 0.904314287654139 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81942175 chr16:81942175 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_131148 0 0 0 0 0 Cytosol 0 0.500231643921092 0.821571111679078 0.000463287842184856 hm5C_site_51206 DeepMRMD:0.821571111679078;iRNA_m5C:0.000463287842184856 51207 chr15 45454041 45454041 1 + T G HNSC 45454041 - 45454021 45454061 41 GGGGCGCAGAGGTCAGTGTGAAGGGGTGGTACTCGGTGGTC GGGGCGCAGAGGTCAGTGTGCAGGGGTGGTACTCGGTGGTC Direct Gain 0 0.952151398511572 0 0.807823121547699 prediction 0.904302797023144 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45454041 chr15:45454041 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_131149 0 0 0 0 0 chromatin 0 0.500231643921093 0.615646243095398 0.000463287842185078 hm5C_site_51207 DeepMRMD:0.615646243095398;iRNA_m5C:0.000463287842185078 51208 chr17 20747674 20747674 1 + G C rs73982310 20747674 + 20747654 20747694 41 GTGGACCCCCCGGGCGGCCCGGGGGACCCCGCCCCGACCCA GTGGACCCCCCGGGCGGCCCCGGGGACCCCGCCCCGACCCA Direct Gain 0 0.952139599328592 0 0.9653480052948 prediction 0.904279198657183 Functional Gain - LOC100287072;CCDC144NL ENSG00000226981 downstream Human unprocessed_pseudogene chr17:20747674 chr17:20747674 . . 0 21 hm5C_associated_SNPs_131150 0 0 0 0 0 unknown 0 0.500230806504679 0.9306960105896 0.000461613009357098 hm5C_site_51208 DeepMRMD:0.9306960105896;iRNA_m5C:0.000461613009357098 51209 chr19 45976504 45976504 1 + T C rs28381252 45976504 + 45976484 45976524 41 AGGCCGGAGAGCTGGTGACTTTGGGGACAGGGGGTGGGAAG AGGCCGGAGAGCTGGTGACTCTGGGGACAGGGGGTGGGAAG Direct Gain 0 0.952112452925303 0 0.944583296775818 prediction 0.904224905850606 Functional Gain - FOSB ENSG00000125740 UTR3 Human protein_coding chr19:45976504 chr19:45976504 . . 0 21 hm5C_associated_SNPs_131151 0 0 1 0 0 Cytosol 0 0.500231735533787 0.889166593551636 0.000463471067574162 hm5C_site_51209 DeepMRMD:0.889166593551636;iRNA_m5C:0.000463471067574162 51210 chrX 69282756 69282756 1 + G C LUAD 69282756 + 69282736 69282776 41 TGGCCGGCTTCAAGCGCGAGGAGGAGGAGAAGCTCGCCGCC TGGCCGGCTTCAAGCGCGAGCAGGAGGAGAAGCTCGCCGCC Direct Gain 0 0.952106443633638 0 0.911504030227661 prediction 0.904212887267275 Functional Gain - OTUD6A ENSG00000189401 CDS Human protein_coding chrX:69282756 chrX:69282756 nonsynonymous SNV 0.267 4 21 hm5C_associated_SNPs_131152 0 0 0 0 0 unknown 0 0.500231643921038 0.823008060455322 0.000463287842075832 hm5C_site_51210 DeepMRMD:0.823008060455322;iRNA_m5C:0.000463287842075832 51211 chr17 78210810 78210810 1 + G C rs145160723 78210810 + 78210790 78210830 41 ACCAGCCTTTCATCCTAACAGGGGAGACAGCTGAGGGGCTC ACCAGCCTTTCATCCTAACACGGGAGACAGCTGAGGGGCTC Direct Gain 0 0.952101550933177 0 0.718795537948608 prediction 0.904203101866354 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210810 chr17:78210810 nonsynonymous SNV 0.137 4 21 hm5C_associated_SNPs_131153 0 0 1 0 2 chromatin 0 0.500232854332606 0.437591075897216 0.00046570866521134 hm5C_site_51211 DeepMRMD:0.437591075897216;iRNA_m5C:0.00046570866521134 51212 chr4 187173201 187173201 1 + T C SKCM 187173201 + 187173181 187173221 41 AAAAACAAGCACACGCATTGTTGGAGGAACAAACTCTTCTT AAAAACAAGCACACGCATTGCTGGAGGAACAAACTCTTCTT Direct Gain 0 0.952066596738868 0 0.731397688388824 prediction 0.904133193477735 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187173201 chr4:187173201 nonsynonymous SNV 0.924 4 21 hm5C_associated_SNPs_131154 0 0 0 0 1 Endoplasmic reticulum 0 0.500231643921176 0.462795376777648 0.00046328784235139 hm5C_site_51212 DeepMRMD:0.462795376777648;iRNA_m5C:0.00046328784235139 51213 chr9 135906443 135906443 1 + C G rs144659860 135906443 - 135906423 135906463 41 CGCTCCCGCCTCAGCTCCACGGGGACGGCGGCCCCCAGCCC CGCTCCCGCCTCAGCTCCACCGGGACGGCGGCCCCCAGCCC Direct Gain 0 0.952027695305766 0 0.920571446418762 prediction 0.904055390611532 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135906443 chr9:135906443 synonymous SNV . 0 21 hm5C_associated_SNPs_131155 0 0 0 0 0 Ribosome 0 0.500231643921105 0.841142892837524 0.000463287842210391 hm5C_site_51213 DeepMRMD:0.841142892837524;iRNA_m5C:0.000463287842210391 51214 chr4 57302654 57302654 1 + C G rs375206193 57302654 - 57302634 57302674 41 TCCCCGAGGCAGTAAAGTTCGGGGAGGCCCGGGAGCGCCTG TCCCCGAGGCAGTAAAGTTCCGGGAGGCCCGGGAGCGCCTG Direct Gain 0 0.951997249848851 0 0.957696795463562 prediction 0.903994499697703 Functional Gain - PAICS ENSG00000128050 intronic Human protein_coding chr4:57302654 chr4:57302654 . . 0 21 hm5C_associated_SNPs_131156 0 0 0 0 0 Ribosome 0 0.500231643921094 0.915393590927124 0.000463287842187743 hm5C_site_51214 DeepMRMD:0.915393590927124;iRNA_m5C:0.000463287842187743 51215 chr17 16321139 16321139 1 + C G BLCA 16321139 - 16321119 16321159 41 GTTGAGGTTGACTCTTATCTGAGGGGCGAATTTCCGGTCCT GTTGAGGTTGACTCTTATCTCAGGGGCGAATTTCCGGTCCT Direct Gain 0 0.951959666057657 0 0.962222695350647 prediction 0.903919332115314 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16321139 chr17:16321139 nonsynonymous SNV 0.267 1 21 hm5C_associated_SNPs_131157 0 0 0 0 0 Endoplasmic reticulum 0 0.500231645073566 0.924445390701294 0.000463290147131534 hm5C_site_51215 DeepMRMD:0.924445390701294;iRNA_m5C:0.000463290147131534 51216 chr15 90931479 90931479 1 + C G rs141041225 90931479 - 90931459 90931499 41 GCCAAGTGCGCGGGCTTGCCGGGGTCCCCGAGGCCCCGCCC GCCAAGTGCGCGGGCTTGCCCGGGTCCCCGAGGCCCCGCCC Direct Gain 0 0.951955578436602 0 0.955602526664734 prediction 0.903911156873203 Functional Gain - IQGAP1 ENSG00000140575 UTR5 Human protein_coding chr15:90931479 chr15:90931479 . . 0 21 hm5C_associated_SNPs_131158 0 0 0 0 0 Nucleus 0 0.500231643921073 0.911205053329468 0.000463287842146887 hm5C_site_51216 DeepMRMD:0.911205053329468;iRNA_m5C:0.000463287842146887 51217 chr16 72094678 72094678 1 + T C rs594359 72094678 + 72094658 72094698 41 CTGGAGGAGGACACCTGGTATGCGACTGGGATCTTAAGCTT CTGGAGGAGGACACCTGGTACGCGACTGGGATCTTAAGCTT Direct Gain 0 0.9519449748063 0 0.834445118904114 prediction 0.9038899496126 Functional Gain - HP ENSG00000257017 CDS Human protein_coding chr16:72094678 chr16:72094678 synonymous SNV . 0 21 hm5C_associated_SNPs_131159 0 0 1 0 0 cytosol 0 0.500231643921092 0.668890237808228 0.000463287842184856 hm5C_site_51217 DeepMRMD:0.668890237808228;iRNA_m5C:0.000463287842184856 51218 chr19 16060501 16060501 1 + G C LUAD 16060501 + 16060481 16060521 41 TTCATTGTGGCTGCCATCTTGAGGATTCCCTCTGCCGAAGG TTCATTGTGGCTGCCATCTTCAGGATTCCCTCTGCCGAAGG Direct Gain 0 0.951928849675671 0 0.928811609745026 prediction 0.903857699351343 Functional Gain - OR10H4 ENSG00000176231 CDS Human protein_coding chr19:16060501 chr19:16060501 nonsynonymous SNV 0.015 3 21 hm5C_associated_SNPs_131160 0 0 0 0 0 unknown 0 0.500231631614981 0.857623219490052 0.000463263229961264 hm5C_site_51218 DeepMRMD:0.857623219490052;iRNA_m5C:0.000463263229961264 51219 chr3 132051110 132051110 1 + A G rs149409115 132051110 - 132051090 132051130 41 TTCCAGATGCTGACACCTTCTGGGGGAAACAGGGCTGCCAG TTCCAGATGCTGACACCTTCCGGGGGAAACAGGGCTGCCAG Direct Gain 0 0.95191476436061 0 0.98823869228363 prediction 0.903829528721221 Functional Gain - ACPP ENSG00000014257 CDS Human protein_coding chr3:132051110 chr3:132051110 synonymous SNV . 0 21 hm5C_associated_SNPs_131161 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643743216 0.97647738456726 0.00046328748643143 hm5C_site_51219 DeepMRMD:0.97647738456726;iRNA_m5C:0.00046328748643143 51220 chr16 55536763 55536763 1 + C G rs11541998 55536763 - 55536743 55536783 41 ACGACGGCATCCAGGTTATCGGGGATGGCATTCCAGGCATC ACGACGGCATCCAGGTTATCCGGGATGGCATTCCAGGCATC Direct Gain 0 0.951910663377839 0 0.888224601745605 prediction 0.903821326755678 Functional Gain - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55536763 chr16:55536763 synonymous SNV . 0 21 hm5C_associated_SNPs_131162 1 0 0 0 0 Endoplasmic reticulum 0 0.500231556283574 0.77644920349121 0.000463112567147927 hm5C_site_51220 DeepMRMD:0.77644920349121;iRNA_m5C:0.000463112567147927 Multicentric Osteolysis-Nodulosis-Arthropathy (MONA) Spectrum Disorders Multicentric Osteolysis-Nodulosis-Arthropathy (MONA) Spectrum Disorders 51221 chr16 30776275 30776275 1 + C G BLCA 30776275 - 30776255 30776295 41 TGTGCCTGAGCCGCCTCACTGAGGGGCTCACTGTCCCCTGG TGTGCCTGAGCCGCCTCACTCAGGGGCTCACTGTCCCCTGG Direct Gain 0 0.95190489736954 0 0.987503290176392 prediction 0.903809794739081 Functional Gain - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30776275 chr16:30776275 synonymous SNV . 0 21 hm5C_associated_SNPs_131163 0 0 0 0 0 Ribosome 0 0.500231643921092 0.975006580352784 0.000463287842184856 hm5C_site_51221 DeepMRMD:0.975006580352784;iRNA_m5C:0.000463287842184856 51222 chr5 138678180 138678180 1 + T C rs73255251 138678180 + 138678160 138678200 41 ACTGGCGGGCTCTTGGCGTCTTGGGGGAACGCTGCAACCGT ACTGGCGGGCTCTTGGCGTCCTGGGGGAACGCTGCAACCGT Direct Gain 0 0.951886459710294 0 0.916650891304016 prediction 0.903772919420587 Functional Gain - PAIP2 ENSG00000120727 UTR5 Human protein_coding chr5:138678180 chr5:138678180 . . 0 21 hm5C_associated_SNPs_131164 0 0 1 0 0 Ribosome 0 0.500231643921092 0.833301782608032 0.000463287842184856 hm5C_site_51222 DeepMRMD:0.833301782608032;iRNA_m5C:0.000463287842184856 51223 chr5 5239922 5239922 1 + G C LUAD 5239922 + 5239902 5239942 41 ACCTGAATGGGCACTGGACCGTGGACTGGCCCGGCCGGTAC ACCTGAATGGGCACTGGACCCTGGACTGGCCCGGCCGGTAC Direct Gain 0 0.95184944825217 0 0.828238129615784 prediction 0.90369889650434 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5239922 chr5:5239922 nonsynonymous SNV 0.985 4 21 hm5C_associated_SNPs_131165 0 0 0 0 0 exosome 0 0.500231643921121 0.656476259231568 0.000463287842242366 hm5C_site_51223 DeepMRMD:0.656476259231568;iRNA_m5C:0.000463287842242366 51224 chr8 145170552 145170552 1 + C G rs61745399 145170552 - 145170532 145170572 41 TCCAGCGGCGGCGGCTCTCCGGGCAGCTGAGCAGGCCCGGC TCCAGCGGCGGCGGCTCTCCCGGCAGCTGAGCAGGCCCGGC Direct Gain 0 0.95184084847395 0 0.946043729782104 prediction 0.9036816969479 Functional Gain - WDR97 ENSG00000179698 CDS Human protein_coding chr8:145170552 chr8:145170552 synonymous SNV . 0 21 hm5C_associated_SNPs_131166 0 0 0 0 0 chromatin 0 0.500231643921092 0.892087459564208 0.000463287842184856 hm5C_site_51224 DeepMRMD:0.892087459564208;iRNA_m5C:0.000463287842184856 51225 chr1 22970524 22970524 1 + T C rs367838299 22970524 + 22970504 22970544 41 TTCCTTCTCCGGGATGGACGTGGGGCCCAGCTCCCTGCCCC TTCCTTCTCCGGGATGGACGCGGGGCCCAGCTCCCTGCCCC Direct Gain 0 0.951834200251725 0 0.982383072376251 prediction 0.903668400503449 Functional Gain - C1QC ENSG00000159189 CDS Human protein_coding chr1:22970524 chr1:22970524 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_131167 0 0 0 0 1 Cytosol 0 0.500231644324768 0.964766144752502 0.000463288649535043 hm5C_site_51225 DeepMRMD:0.964766144752502;iRNA_m5C:0.000463288649535043 51226 chr9 91616168 91616168 1 + T C HNSC 91616168 + 91616148 91616188 41 GGTGCGGGGGAACGAGACCCTGCGGGAGCATTACCAGTACG GGTGCGGGGGAACGAGACCCCGCGGGAGCATTACCAGTACG Direct Gain 0 0.951829656926498 0 0.78679621219635 prediction 0.903659313852996 Functional Gain - S1PR3 ENSG00000213694 CDS Human protein_coding chr9:91616168 chr9:91616168 nonsynonymous SNV 0.031 2 21 hm5C_associated_SNPs_131168 0 0 0 0 0 cytosol 0 0.500231643921669 0.5735924243927 0.00046328784333749 hm5C_site_51226 DeepMRMD:0.5735924243927;iRNA_m5C:0.00046328784333749 51227 chr19 48197763 48197763 1 + C G BLCA 48197763 - 48197743 48197783 41 GCAACCTGGAGGACGTCTCAGAGGAGGAGGCCACAGCAGAG GCAACCTGGAGGACGTCTCACAGGAGGAGGCCACAGCAGAG Direct Gain 0 0.951821076194655 0 0.766929268836975 prediction 0.903642152389309 Functional Gain - BICRA ENSG00000063169 CDS Human protein_coding chr19:48197763 chr19:48197763 nonsynonymous SNV 0.076 2 21 hm5C_associated_SNPs_131169 0 0 0 0 0 unknown 0 0.500231645542801 0.53385853767395 0.000463291085601059 hm5C_site_51227 DeepMRMD:0.53385853767395;iRNA_m5C:0.000463291085601059 51228 chr15 63883949 63883949 1 + T C rs149655439 63883949 + 63883929 63883969 41 TGTGACCCTCTGGGATTTACTTGGATCATCACCCGCACTTC TGTGACCCTCTGGGATTTACCTGGATCATCACCCGCACTTC Direct Gain 0 0.951805823822694 0 0.849938929080963 prediction 0.903611647645389 Functional Gain - USP3-AS1 ENSG00000259248 ncRNA_intronic Human antisense chr15:63883949 chr15:63883949 . . 0 21 hm5C_associated_SNPs_131170 0 0 1 0 0 unknown 0 0.500231644062543 0.699877858161926 0.00046328812508567 hm5C_site_51228 DeepMRMD:0.699877858161926;iRNA_m5C:0.00046328812508567 51229 chr7 142749550 142749550 1 + T C LAML 142749550 + 142749530 142749570 41 GCTTTATCTTCTCGCCTTCATGGGAAACACCATCATCATAG GCTTTATCTTCTCGCCTTCACGGGAAACACCATCATCATAG Direct Gain 0 0.951789483209507 0 0.765482664108276 prediction 0.903578966419015 Functional Gain - OR6V1 ENSG00000225781 CDS Human protein_coding chr7:142749550 chr7:142749550 nonsynonymous SNV 0.016 0 21 hm5C_associated_SNPs_131171 0 0 0 0 0 unknown 0 0.500231643921092 0.530965328216552 0.000463287842184856 hm5C_site_51229 DeepMRMD:0.530965328216552;iRNA_m5C:0.000463287842184856 51230 chr17 7287876 7287876 1 + T C CESC 7287876 + 7287856 7287896 41 GGATGTTTGGGGTGACGCTGTGGGAGATGTTCTCCGGGGGC GGATGTTTGGGGTGACGCTGCGGGAGATGTTCTCCGGGGGC Direct Gain 0 0.951784148221323 0 0.935893833637238 prediction 0.903568296442646 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7287876 chr17:7287876 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_131172 0 0 0 1 1 nucleus 0 0.500231643921093 0.871787667274476 0.000463287842185078 hm5C_site_51230 DeepMRMD:0.871787667274476;iRNA_m5C:0.000463287842185078 51231 chr3 49695207 49695207 1 + A G UCEC 49695207 - 49695187 49695227 41 GCCAGGCAGGTAGGGGCTGATGGCAGTTGGCCCTACAAGCT GCCAGGCAGGTAGGGGCTGACGGCAGTTGGCCCTACAAGCT Direct Gain 0 0.951783992114016 0 0.852613806724548 prediction 0.903567984228033 Functional Gain - BSN ENSG00000164061 CDS Human protein_coding chr3:49695207 chr3:49695207 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_131173 0 0 0 0 0 chromatin 0 0.500231643921092 0.705227613449096 0.000463287842184856 hm5C_site_51231 DeepMRMD:0.705227613449096;iRNA_m5C:0.000463287842184856 51232 chr1 1564822 1564822 1 + C G rs539602114 1564822 - 1564802 1564842 41 TGCAGGTTCGTCACGGTGTTGGGGGTCCCGAGCGTTTGCCT TGCAGGTTCGTCACGGTGTTCGGGGTCCCGAGCGTTTGCCT Direct Gain 0 0.951783382969606 0 0.967034220695496 prediction 0.903566765939213 Functional Gain - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1564822 chr1:1564822 synonymous SNV . 0 21 hm5C_associated_SNPs_131174 0 0 0 0 0 Ribosome 0 0.500231643924427 0.934068441390992 0.000463287848853744 hm5C_site_51232 DeepMRMD:0.934068441390992;iRNA_m5C:0.000463287848853744 51233 chr12 93100627 93100627 1 + T C STAD 93100627 + 93100607 93100647 41 AGGTGACCACCTGGGGAAGCTGGGGAGCTCCTGTGGGCTTC AGGTGACCACCTGGGGAAGCCGGGGAGCTCCTGTGGGCTTC Direct Gain 0 0.95175893392242 0 0.898891925811768 prediction 0.90351786784484 Functional Gain - C12orf74 ENSG00000214215 CDS Human protein_coding chr12:93100627 chr12:93100627 nonsynonymous SNV 0.048 0 21 hm5C_associated_SNPs_131175 0 0 0 0 0 exosome 0 0.500231643921092 0.797783851623536 0.000463287842184856 hm5C_site_51233 DeepMRMD:0.797783851623536;iRNA_m5C:0.000463287842184856 51234 chr19 44030385 44030385 1 + C G BLCA 44030385 - 44030365 44030405 41 CCCAGGCTGACTTACACATTGAGGATGGAGACTCCATCCGC CCCAGGCTGACTTACACATTCAGGATGGAGACTCCATCCGC Direct Gain 0 0.951747736731089 0 0.757896542549133 prediction 0.903495473462177 Functional Gain - ETHE1 ENSG00000105755 CDS Human protein_coding chr19:44030385 chr19:44030385 nonsynonymous SNV 0.428 1 21 hm5C_associated_SNPs_131176 0 0 1 0 1 Ribosome 0 0.500231643921092 0.515793085098266 0.000463287842184856 hm5C_site_51234 DeepMRMD:0.515793085098266;iRNA_m5C:0.000463287842184856 51235 chr19 33203392 33203392 1 + A G rs187420283 33203392 - 33203372 33203412 41 GCATGAGAATCGCTGGAACCTGGGAGGTGGAGGTTGCAGTG GCATGAGAATCGCTGGAACCCGGGAGGTGGAGGTTGCAGTG Direct Gain 0 0.951713129678877 0 0.918771743774414 prediction 0.903426259357754 Functional Gain - NUDT19 ENSG00000213965 UTR3 Human protein_coding chr19:33203392 chr19:33203392 . . 0 21 hm5C_associated_SNPs_131177 0 0 0 0 0 Ribosome 0 0.500231643381737 0.837543487548828 0.00046328676347307 hm5C_site_51235 DeepMRMD:0.837543487548828;iRNA_m5C:0.00046328676347307 51236 chr3 149193684 149193684 1 + T C rs1802837 149193684 + 149193664 149193704 41 TGCTGCGGCAACGAGGGCTGTGGGAAGCGATTTGCGGTGAG TGCTGCGGCAACGAGGGCTGCGGGAAGCGATTTGCGGTGAG Direct Gain 0 0.951668567398942 0 0.797668159008026 prediction 0.903337134797883 Functional Gain - TM4SF4 ENSG00000169903 CDS Human protein_coding chr3:149193684 chr3:149193684 synonymous SNV . 0 21 hm5C_associated_SNPs_131178 0 0 0 0 2 exosome 0 0.500231643920895 0.595336318016052 0.000463287841790283 hm5C_site_51236 DeepMRMD:0.595336318016052;iRNA_m5C:0.000463287841790283 51237 chr2 113089876 113089876 1 + A G COAD 113089876 - 113089856 113089896 41 ACAGGAAGGCTGTGCACTGCTGGGACCTGAACCTTACCAGA ACAGGAAGGCTGTGCACTGCCGGGACCTGAACCTTACCAGA Direct Gain 0 0.951661547060311 0 0.847560882568359 prediction 0.903323094120623 Functional Gain - ZC3H6 ENSG00000188177 CDS Human protein_coding chr2:113089876 chr2:113089876 synonymous SNV . 0 21 hm5C_associated_SNPs_131179 0 0 0 0 0 Cytosol 0 0.500231645890587 0.695121765136718 0.000463291781173991 hm5C_site_51237 DeepMRMD:0.695121765136718;iRNA_m5C:0.000463291781173991 51238 chr19 13936482 13936482 1 + A G STAD 13936482 - 13936462 13936502 41 CCCAGCAGCGTGGTGTCTGGTGGGGCGCTGACCGGGGTGGC CCCAGCAGCGTGGTGTCTGGCGGGGCGCTGACCGGGGTGGC Direct Gain 0 0.951660910877303 0 0.957268595695496 prediction 0.903321821754605 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13936482 chr19:13936482 synonymous SNV . 0 21 hm5C_associated_SNPs_131180 0 0 0 0 0 chromatin 0 0.500569529623268 0.914537191390992 0.00113905924653612 hm5C_site_51238 DeepMRMD:0.914537191390992;iRNA_m5C:0.00113905924653612 51239 chr7 30324595 30324595 1 + G C rs563006739 30324595 + 30324575 30324615 41 GAGGAGGCGGTGCCGAGATCGGGGGCGCCGAGCGCGGCAGC GAGGAGGCGGTGCCGAGATCCGGGGCGCCGAGCGCGGCAGC Direct Gain 0 0.951657167579201 0 0.988725066184998 prediction 0.903314335158403 Functional Gain - LOC105375218 ENSG00000180233 UTR5 Human protein_coding chr7:30324595 chr7:30324595 . . 0 21 hm5C_associated_SNPs_131181 0 0 1 0 0 unknown 0 0.500231643918586 0.977450132369996 0.000463287837171089 hm5C_site_51239 DeepMRMD:0.977450132369996;iRNA_m5C:0.000463287837171089 51240 chr17 51900375 51900375 1 + T G rs115882848 51900375 - 51900355 51900395 41 TGGTGAGTGATGGAGGTATCAGGGAGCGCTCCAGGGCCCTT TGGTGAGTGATGGAGGTATCCGGGAGCGCTCCAGGGCCCTT Direct Gain 0 0.951647196073784 0 0.924659550189972 prediction 0.903294392147568 Functional Gain - KIF2B ENSG00000141200 UTR5 Human protein_coding chr17:51900375 chr17:51900375 . . 0 21 hm5C_associated_SNPs_131182 0 0 0 0 0 exosome 0 0.500231643860161 0.849319100379944 0.00046328772032278 hm5C_site_51240 DeepMRMD:0.849319100379944;iRNA_m5C:0.00046328772032278 51241 chr1 227935782 227935782 1 + A G STAD 227935782 - 227935762 227935802 41 AGCTCCTCGCCCCGGGTCCTTGGGACAGATGCGTCTGCCAC AGCTCCTCGCCCCGGGTCCTCGGGACAGATGCGTCTGCCAC Direct Gain 0 0.951637384200236 0 0.940961718559265 prediction 0.903274768400472 Functional Gain - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227935782 chr1:227935782 synonymous SNV . 0 21 hm5C_associated_SNPs_131183 0 0 0 0 0 Ribosome 0 0.500231643921092 0.88192343711853 0.000463287842184856 hm5C_site_51241 DeepMRMD:0.88192343711853;iRNA_m5C:0.000463287842184856 51242 chr12 53700879 53700879 1 + G C LUAD 53700879 + 53700859 53700899 41 CACACCCGAGAGGGTGCCTTGAGCATGGCCCGTGCCACCTT CACACCCGAGAGGGTGCCTTCAGCATGGCCCGTGCCACCTT Direct Gain 0 0.951636886828109 0 0.75883674621582 prediction 0.903273773656219 Functional Gain - C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700879 chr12:53700879 nonsynonymous SNV 0.988 3 21 hm5C_associated_SNPs_131184 0 0 1 0 0 cytosol 0 0.500231649034336 0.51767349243164 0.000463298068672291 hm5C_site_51242 DeepMRMD:0.51767349243164;iRNA_m5C:0.000463298068672291 51243 chr20 34204074 34204074 1 + G C LUAD 34204074 + 34204054 34204094 41 GCCTGGGGAGCCCGAGGGCAGAAGAGCCCGGGGCCCGAGCT GCCTGGGGAGCCCGAGGGCACAAGAGCCCGGGGCCCGAGCT Direct Gain 0 0.951635678917295 0 0.748994588851929 prediction 0.90327135783459 Functional Gain - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34204074 chr20:34204074 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_131185 0 0 0 0 0 chromatin 0 0.500231643921092 0.497989177703858 0.000463287842184856 hm5C_site_51243 DeepMRMD:0.497989177703858;iRNA_m5C:0.000463287842184856 51244 chr6 43970858 43970858 1 + A G rs114544123 43970858 - 43970838 43970878 41 CCGGGGAGCGGCGTCTTAATTACGGCGCGTTGGCCCAGCGC CCGGGGAGCGGCGTCTTAATCACGGCGCGTTGGCCCAGCGC Direct Gain 0 0.951632047650214 0 0.864575505256653 prediction 0.903264095300429 Functional Gain - C6orf223 ENSG00000181577 CDS Human protein_coding chr6:43970858 chr6:43970858 nonsynonymous SNV 0.011 3 21 hm5C_associated_SNPs_131186 0 0 0 0 0 nucleus 0 0.500231643921093 0.729151010513306 0.000463287842185078 hm5C_site_51244 DeepMRMD:0.729151010513306;iRNA_m5C:0.000463287842185078 51245 chr16 2550426 2550426 1 + A G LUAD 2550426 - 2550406 2550446 41 TCTTGGAGGGCAGGTTGAAGTGGCGAGCGGCCAGGAAGGGC TCTTGGAGGGCAGGTTGAAGCGGCGAGCGGCCAGGAAGGGC Direct Gain 0 0.951625037723254 0 0.806365013122559 prediction 0.903250075446508 Functional Gain - TBC1D24 ENSG00000162065 CDS Human protein_coding chr16:2550426 chr16:2550426 nonsynonymous SNV 0.700 3 21 hm5C_associated_SNPs_131187 0 0 0 0 0 Cytosol 0 0.500231643921092 0.612730026245118 0.000463287842184856 hm5C_site_51245 DeepMRMD:0.612730026245118;iRNA_m5C:0.000463287842184856 51246 chr1 179783133 179783133 1 + T G BLCA 179783133 - 179783113 179783153 41 GTCAGCCGTCCGTATGTAAAAGGGGGAGCTGTATGGGGAGC GTCAGCCGTCCGTATGTAAACGGGGGAGCTGTATGGGGAGC Direct Gain 0 0.951609110900467 0 0.824222326278687 prediction 0.903218221800935 Functional Gain - FAM163A ENSG00000143340 CDS Human protein_coding chr1:179783133 chr1:179783133 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_131188 0 0 0 0 0 exosome 0 0.500231643921092 0.648444652557374 0.000463287842184856 hm5C_site_51246 DeepMRMD:0.648444652557374;iRNA_m5C:0.000463287842184856 51247 chr16 89227280 89227280 1 + T C rs149713069 89227280 + 89227260 89227300 41 GAGGAATGGAGGGGCCATCGTGGGGCTCTCCCGGAAACTGG GAGGAATGGAGGGGCCATCGCGGGGCTCTCCCGGAAACTGG Direct Gain 0 0.951595265297922 0 0.923011302947998 prediction 0.903190530595843 Functional Gain - LINC00304 ENSG00000180422 ncRNA_exonic Human lincRNA chr16:89227280 chr16:89227280 . . 0 21 hm5C_associated_SNPs_131189 0 0 0 0 0 unknown 0 0.500231643914708 0.846022605895996 0.000463287829416403 hm5C_site_51247 DeepMRMD:0.846022605895996;iRNA_m5C:0.000463287829416403 51248 chr5 80369234 80369234 1 + A G LUAD 80369234 - 80369214 80369254 41 GCTGACGTCGTCGTGGCTGATGGGGGGCTTCTTGGAGCTGG GCTGACGTCGTCGTGGCTGACGGGGGGCTTCTTGGAGCTGG Direct Gain 0 0.951579742300123 0 0.874054193496704 prediction 0.903159484600246 Functional Gain - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80369234 chr5:80369234 nonsynonymous SNV 0.988 1 21 hm5C_associated_SNPs_131190 0 0 0 0 0 Ribosome 0 0.500231643886595 0.748108386993408 0.000463287773189824 hm5C_site_51248 DeepMRMD:0.748108386993408;iRNA_m5C:0.000463287773189824 51249 chr12 93969299 93969299 1 + T C rs76627560 93969299 + 93969279 93969319 41 GTCAAAGGTCCAGGCTCCAGTAGGAGAGAAAGAACTCCTCA GTCAAAGGTCCAGGCTCCAGCAGGAGAGAAAGAACTCCTCA Direct Gain 0 0.951571502474413 0 0.842510104179382 prediction 0.903143004948827 Functional Gain - SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93969299 chr12:93969299 unknown . 0 21 hm5C_associated_SNPs_131191 0 0 1 0 0 Ribosome 0 0.500231643921092 0.685020208358764 0.000463287842184856 hm5C_site_51249 DeepMRMD:0.685020208358764;iRNA_m5C:0.000463287842184856 51250 chr14 86088396 86088396 1 + G C STAD 86088396 + 86088376 86088416 41 GTGTGCCTGTTGGGCTTCCTGTGGACTTGCAAGAGCTGAGA GTGTGCCTGTTGGGCTTCCTCTGGACTTGCAAGAGCTGAGA Direct Gain 0 0.951544139085333 0 0.950757026672363 prediction 0.903088278170666 Functional Gain - FLRT2 ENSG00000185070 CDS Human protein_coding chr14:86088396 chr14:86088396 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_131192 0 0 0 0 0 Ribosome 0 0.500231788619086 0.901514053344726 0.000463577238172252 hm5C_site_51250 DeepMRMD:0.901514053344726;iRNA_m5C:0.000463577238172252 51251 chr1 196749088 196749088 1 + A G UCEC 196749088 - 196749068 196749108 41 CTTACTGACACGGATGCATCTGGGAGTAGGAGACCAGCCTT CTTACTGACACGGATGCATCCGGGAGTAGGAGACCAGCCTT Direct Gain 0 0.951543485603636 0 0.885552048683167 prediction 0.903086971207271 Functional Gain - CFHR3 ENSG00000116785 CDS Human protein_coding chr1:196749088 chr1:196749088 nonsynonymous SNV 0.005 2 21 hm5C_associated_SNPs_131193 0 0 0 0 0 Endoplasmic reticulum 0 0.50023164392103 0.771104097366334 0.000463287842059623 hm5C_site_51251 DeepMRMD:0.771104097366334;iRNA_m5C:0.000463287842059623 51252 chr5 53813653 53813653 1 + G C rs577640042 53813653 + 53813633 53813673 41 AGGGCGCGACCGGCTGGTCCGGGCAGCGTGGGTTTGCCGCC AGGGCGCGACCGGCTGGTCCCGGCAGCGTGGGTTTGCCGCC Direct Gain 0 0.951538770162337 0 0.89306628704071 prediction 0.903077540324675 Functional Gain - SNX18 ENSG00000178996 UTR5 Human protein_coding chr5:53813653 chr5:53813653 . . 0 21 hm5C_associated_SNPs_131194 0 0 1 0 0 chromatin 0 0.500231635990084 0.78613257408142 0.000463271980168267 hm5C_site_51252 DeepMRMD:0.78613257408142;iRNA_m5C:0.000463271980168267 51253 chr2 187627333 187627333 1 + C G BRCA 187627333 - 187627313 187627353 41 GCCTTAAAGCTGGGTCCTCAGGGGAACAGACGGTGGTTCCA GCCTTAAAGCTGGGTCCTCACGGGAACAGACGGTGGTTCCA Direct Gain 0 0.95153810848805 0 0.903970718383789 prediction 0.9030762169761 Functional Gain - FAM171B ENSG00000144369 CDS Human protein_coding chr2:187627333 chr2:187627333 nonsynonymous SNV 0.980 4 21 hm5C_associated_SNPs_131195 0 0 0 0 0 nucleoplasm 0 0.500231644139391 0.807941436767578 0.000463288278781393 hm5C_site_51253 DeepMRMD:0.807941436767578;iRNA_m5C:0.000463288278781393 51254 chr14 93119043 93119043 1 + A G LUSC 93119043 - 93119023 93119063 41 CCTCCGTGCTGCTGGTGGAGTAGGAGTCCTGGTCGGTGGCC CCTCCGTGCTGCTGGTGGAGCAGGAGTCCTGGTCGGTGGCC Direct Gain 0 0.951535635963948 0 0.866204380989075 prediction 0.903071271927895 Functional Gain - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93119043 chr14:93119043 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_131196 0 0 0 0 0 cytosol 0 0.500231643921093 0.73240876197815 0.000463287842186855 hm5C_site_51254 DeepMRMD:0.73240876197815;iRNA_m5C:0.000463287842186855 51255 chr1 159273855 159273855 1 + G C LUAD 159273855 + 159273835 159273875 41 TCCACAATGGCAGCCTTTCAGAAGAGACAAATTCAAGTTTG TCCACAATGGCAGCCTTTCACAAGAGACAAATTCAAGTTTG Direct Gain 0 0.951533459088593 0 0.880294382572174 prediction 0.903066918177186 Functional Gain - FCER1A ENSG00000179639 CDS Human protein_coding chr1:159273855 chr1:159273855 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131197 0 0 0 0 0 exosome 0 0.500231684380161 0.760588765144348 0.000463368760322602 hm5C_site_51255 DeepMRMD:0.760588765144348;iRNA_m5C:0.000463368760322602 51256 chr19 39898933 39898933 1 + C G HNSC 39898933 - 39898913 39898953 41 GTGGTGAGGTCCGGCGGCCAGAGGGCAGGCCGGAGAAGCTG GTGGTGAGGTCCGGCGGCCACAGGGCAGGCCGGAGAAGCTG Direct Gain 0 0.951510132566169 0 0.769964218139648 prediction 0.903020265132338 Functional Gain - ZFP36 ENSG00000128016 CDS Human protein_coding chr19:39898933 chr19:39898933 nonsynonymous SNV 0.697 2 21 hm5C_associated_SNPs_131198 0 0 0 0 0 nucleus 0 0.500231644147749 0.539928436279296 0.000463288295497799 hm5C_site_51256 DeepMRMD:0.539928436279296;iRNA_m5C:0.000463288295497799 51257 chr11 48238825 48238825 1 + T G LUAD 48238825 - 48238805 48238845 41 TGATAACGAGAATCTGAATTATGGAGTGACAAAAGCCCCCC TGATAACGAGAATCTGAATTCTGGAGTGACAAAAGCCCCCC Direct Gain 0 0.95148589779287 0 0.87979382276535 prediction 0.902971795585741 Functional Gain - OR4B1 ENSG00000175619 CDS Human protein_coding chr11:48238825 chr11:48238825 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_131199 0 0 0 0 0 unknown 0 0.500231643921092 0.7595876455307 0.000463287842184856 hm5C_site_51257 DeepMRMD:0.7595876455307;iRNA_m5C:0.000463287842184856 51258 chr1 32052669 32052669 1 + C G rs138261118 32052669 - 32052649 32052689 41 CTGCGCCCCGGGCTCTGTCGGGCGAGGCTGGGGTCACCGCC CTGCGCCCCGGGCTCTGTCGCGCGAGGCTGGGGTCACCGCC Direct Gain 0 0.951469764837956 0 0.936879277229309 prediction 0.902939529675912 Functional Gain - TINAGL1 ENSG00000142910 UTR3 Human protein_coding chr1:32052669 chr1:32052669 . . 0 21 hm5C_associated_SNPs_131200 0 0 0 0 0 Ribosome 0 0.500231617956629 0.873758554458618 0.000463235913257698 hm5C_site_51258 DeepMRMD:0.873758554458618;iRNA_m5C:0.000463235913257698 51259 chr13 114325855 114325855 1 + C G rs117878269 114325855 - 114325835 114325875 41 AGAAGAGGGCGCGCGGCTCCGGGAAGCCAGGGTTCTCCTCA AGAAGAGGGCGCGCGGCTCCCGGAAGCCAGGGTTCTCCTCA Direct Gain 0 0.951465999489324 0 0.79391348361969 prediction 0.902931998978649 Functional Gain - GRK1 ENSG00000185974 CDS Human protein_coding chr13:114325855 chr13:114325855 nonsynonymous SNV 0.018 0 21 hm5C_associated_SNPs_131201 0 0 0 0 0 exosome 0 0.500231643921092 0.58782696723938 0.000463287842184856 hm5C_site_51259 DeepMRMD:0.58782696723938;iRNA_m5C:0.000463287842184856 51260 chr20 209989 209989 1 + A C rs143345128 209989 + 209969 210009 41 CACTGCAATGTGGATGAAAAAGAGATACAGAAATGCAAGAT CACTGCAATGTGGATGAAAACGAGATACAGAAATGCAAGAT Direct Gain 0 0.95145469704936 0 0.602636337280273 prediction 0.902909394098719 Functional Gain - DEFB129 ENSG00000125903 CDS Human protein_coding chr20:209989 chr20:209989 nonsynonymous SNV 0.140 2 21 hm5C_associated_SNPs_131202 0 0 0 0 1 exosome 0 0.500205647800551 0.205272674560546 0.000411295601102868 hm5C_site_51260 DeepMRMD:0.205272674560546;iRNA_m5C:0.000411295601102868 51261 chr16 24166130 24166130 1 + T C rs432998 24166130 + 24166110 24166150 41 AAGCGGGTGTTGGCCCTGCCTGGGAAGCCGCCCTTCCTGAC AAGCGGGTGTTGGCCCTGCCCGGGAAGCCGCCCTTCCTGAC Direct Gain 0 0.951454612640576 0 0.921088576316833 prediction 0.902909225281151 Functional Gain - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24166130 chr16:24166130 synonymous SNV . 0 21 hm5C_associated_SNPs_131203 0 0 1 0 1 Ribosome 0 0.500231643921092 0.842177152633666 0.000463287842184856 hm5C_site_51261 DeepMRMD:0.842177152633666;iRNA_m5C:0.000463287842184856 51262 chr2 241631420 241631420 1 + A G LUAD 241631420 - 241631400 241631440 41 AAGACTTCATAGGCGCCCACTGGGAGCAGGGCCTTGGAGGC AAGACTTCATAGGCGCCCACCGGGAGCAGGGCCTTGGAGGC Direct Gain 0 0.951447926459826 0 0.924681901931763 prediction 0.902895852919651 Functional Gain - AQP12A ENSG00000184945 CDS Human protein_coding chr2:241631420 chr2:241631420 synonymous SNV . 0 21 hm5C_associated_SNPs_131204 0 0 0 0 0 unknown 0 0.50023164392109 0.849363803863526 0.000463287842179971 hm5C_site_51262 DeepMRMD:0.849363803863526;iRNA_m5C:0.000463287842179971 51263 chr6 32938906 32938906 1 + T G rs556834097 32938906 - 32938886 32938926 41 AGTCCTGGGAGGGATGACTTAAGGGAAAAACCCTCCCCCTC AGTCCTGGGAGGGATGACTTCAGGGAAAAACCCTCCCCCTC Direct Gain 0 0.951437898463566 0 0.991182267665863 prediction 0.902875796927132 Functional Gain - BRD2 ENSG00000204256 UTR5 Human protein_coding chr6:32938906 chr6:32938906 . . 0 21 hm5C_associated_SNPs_131205 0 0 0 0 0 Cytosol 0 0.500231643921093 0.982364535331726 0.000463287842185078 hm5C_site_51263 DeepMRMD:0.982364535331726;iRNA_m5C:0.000463287842185078 51264 chr12 56522161 56522161 1 + C G ACC 56522161 - 56522141 56522181 41 CTGGTCAGTGGGGTCGGAGGGAGCAGAGGGCTGGTCCATGG CTGGTCAGTGGGGTCGGAGGCAGCAGAGGGCTGGTCCATGG Direct Gain 0 0.951433616156423 0 0.58504444360733 prediction 0.902867232312846 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56522161 chr12:56522161 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_131206 0 0 1 0 0 Endoplasmic reticulum 0 0.500231643921092 0.17008888721466 0.000463287842184856 hm5C_site_51264 DeepMRMD:0.17008888721466;iRNA_m5C:0.000463287842184856 51265 chr16 50324449 50324449 1 + G C LUAD 50324449 + 50324429 50324469 41 CCCTCTCTGTGCTGATGTACGTCGAGTGTCTCCTGCGGCGC CCCTCTCTGTGCTGATGTACCTCGAGTGTCTCCTGCGGCGC Direct Gain 0 0.951417557201854 0 0.768563866615295 prediction 0.902835114403708 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50324449 chr16:50324449 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_131207 0 0 1 0 1 Endoplasmic reticulum 0 0.500231171732209 0.53712773323059 0.00046234346441798 hm5C_site_51265 DeepMRMD:0.53712773323059;iRNA_m5C:0.00046234346441798 51266 chr2 74783641 74783641 1 + A G LAML 74783641 - 74783621 74783661 41 AGGAGCTCTTGGGGGCCAGGTGGGGAAGGCAACTTCCCCTC AGGAGCTCTTGGGGGCCAGGCGGGGAAGGCAACTTCCCCTC Direct Gain 0 0.951412761960105 0 0.931078672409058 prediction 0.902825523920209 Functional Gain - DOK1 ENSG00000115325 CDS Human protein_coding chr2:74783641 chr2:74783641 synonymous SNV . 0 21 hm5C_associated_SNPs_131208 0 0 0 0 0 Cytosol 0 0.500231643921092 0.862157344818116 0.000463287842184856 hm5C_site_51266 DeepMRMD:0.862157344818116;iRNA_m5C:0.000463287842184856 51267 chr10 124768449 124768449 1 + T C rs148327034 124768449 + 124768429 124768469 41 AGGGATTAAGGGGGGGTGTGTGCGGGGCGGGTACTGAGTGG AGGGATTAAGGGGGGGTGTGCGCGGGGCGGGTACTGAGTGG Direct Gain 0 0.951400152371823 0 0.824036359786987 prediction 0.902800304743646 Functional Gain - ACADSB ENSG00000095574;ENSG00000196177 upstream Human other chr10:124768449 chr10:124768449 . . 0 21 hm5C_associated_SNPs_131209 1 0 0 0 0 Cytosol 0 0.500231643921092 0.648072719573974 0.000463287842184856 hm5C_site_51267 DeepMRMD:0.648072719573974;iRNA_m5C:0.000463287842184856 Deficiency of 2-methylbutyryl-CoA dehydrogenase Deficiency of 2-methylbutyryl-CoA dehydrogenase 51268 chr7 21940708 21940708 1 + A G SKCM 21940708 - 21940688 21940728 41 TCTGTCCACGGGGGTGGCTTTTGCAAAGATGACCGGCATAG TCTGTCCACGGGGGTGGCTTCTGCAAAGATGACCGGCATAG Direct Gain 0 0.951393212990683 0 0.747148275375366 prediction 0.902786425981366 Functional Gain - DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21940708 chr7:21940708 nonsynonymous SNV 0.870 2 21 hm5C_associated_SNPs_131210 0 0 1 0 0 nucleolus 0 0.500232739976623 0.494296550750732 0.000465479953246417 hm5C_site_51268 DeepMRMD:0.494296550750732;iRNA_m5C:0.000465479953246417 51269 chr3 62189051 62189051 1 + T G SKCM 62189051 - 62189031 62189071 41 CCACACAGTGCTGGGGAAAGAGGAGATGCCACCACCGCCGA CCACACAGTGCTGGGGAAAGCGGAGATGCCACCACCGCCGA Direct Gain 0 0.951378910482238 0 0.855782330036163 prediction 0.902757820964477 Functional Gain - PTPRG ENSG00000144724 CDS Human protein_coding chr3:62189051 chr3:62189051 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131211 0 0 0 0 0 Ribosome 0 0.50023164392115 0.711564660072326 0.000463287842300097 hm5C_site_51269 DeepMRMD:0.711564660072326;iRNA_m5C:0.000463287842300097 51270 chr13 101707748 101707748 1 + T C UCEC 101707748 + 101707728 101707768 41 GCAGGAAGCCGCGTCAGTCATGGGGTTCATTTTGCACACGA GCAGGAAGCCGCGTCAGTCACGGGGTTCATTTTGCACACGA Direct Gain 0 0.951367379409487 0 0.904586315155029 prediction 0.902734758818974 Functional Gain - NALCN ENSG00000102452 CDS Human protein_coding chr13:101707748 chr13:101707748 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_131212 0 0 0 0 1 exosome 0 0.500231643921076 0.809172630310058 0.00046328784215266 hm5C_site_51270 DeepMRMD:0.809172630310058;iRNA_m5C:0.00046328784215266 51271 chr14 104643503 104643503 1 + C G SKCM 104643503 - 104643483 104643523 41 ACCCAGCTTGGGTACAGCCCGGGGAGGCCGCCCAGGGGCTT ACCCAGCTTGGGTACAGCCCCGGGAGGCCGCCCAGGGGCTT Direct Gain 0 0.951358229181077 0 0.879870355129242 prediction 0.902716458362155 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104643503 chr14:104643503 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_131213 0 0 0 0 0 Ribosome 0 0.500231643921092 0.759740710258484 0.000463287842184856 hm5C_site_51271 DeepMRMD:0.759740710258484;iRNA_m5C:0.000463287842184856 51272 chr17 7340711 7340711 1 + A G rs192646505 7340711 - 7340691 7340731 41 CCGCGGAGCCGGGCCAATTCTCCGAGCAGCGCAGCGGAGTC CCGCGGAGCCGGGCCAATTCCCCGAGCAGCGCAGCGGAGTC Direct Gain 0 0.951355145551832 0 0.757972717285156 prediction 0.902710291103665 Functional Gain - TMEM102 ENSG00000181284 CDS Human protein_coding chr17:7340711 chr17:7340711 synonymous SNV . 0 21 hm5C_associated_SNPs_131214 0 0 0 0 0 exosome 0 0.500231643038216 0.515945434570312 0.000463286076431757 hm5C_site_51272 DeepMRMD:0.515945434570312;iRNA_m5C:0.000463286076431757 51273 chr6 52442282 52442282 1 + G C rs34793449 52442282 + 52442262 52442302 41 CCGGGCAGCCGGATGCTCCCGGGGTTGCGGGCTGTGGCCCC CCGGGCAGCCGGATGCTCCCCGGGTTGCGGGCTGTGGCCCC Direct Gain 0 0.951347179314729 0 0.820701360702515 prediction 0.902694358629459 Functional Gain - TRAM2-AS1 ENSG00000225791 ncRNA_exonic Human lincRNA chr6:52442282 chr6:52442282 . . 0 21 hm5C_associated_SNPs_131215 0 0 1 0 0 unknown 0 0.500231643921092 0.64140272140503 0.000463287842184856 hm5C_site_51273 DeepMRMD:0.64140272140503;iRNA_m5C:0.000463287842184856 51274 chr14 64906956 64906956 1 + A C COAD 64906956 + 64906936 64906976 41 GGTGGTGGCATCCAGTAAGAAAGGAGAGCCCGTCAGTGCCG GGTGGTGGCATCCAGTAAGACAGGAGAGCCCGTCAGTGCCG Direct Gain 0 0.951343336367118 0 0.704656362533569 prediction 0.902686672734236 Functional Gain - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64906956 chr14:64906956 nonsynonymous SNV 0.658 0 21 hm5C_associated_SNPs_131216 0 0 1 0 1 Nucleus 0 0.50023035541531 0.409312725067138 0.000460710830619604 hm5C_site_51274 DeepMRMD:0.409312725067138;iRNA_m5C:0.000460710830619604 51275 chr10 26789960 26789960 1 + G C BLCA 26789960 + 26789940 26789980 41 CCACTGGTATCAGCCAATATGAGGATGACTTACCACCTCCA CCACTGGTATCAGCCAATATCAGGATGACTTACCACCTCCA Direct Gain 0 0.951323706243198 0 0.972801566123962 prediction 0.902647412486395 Functional Gain - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26789960 chr10:26789960 nonsynonymous SNV 0.009 1 21 hm5C_associated_SNPs_131217 0 0 0 0 1 nucleus 0 0.500182533526926 0.945603132247924 0.000365067053851309 hm5C_site_51275 DeepMRMD:0.945603132247924;iRNA_m5C:0.000365067053851309 51276 chr14 19553758 19553758 1 + G C BLCA 19553758 + 19553738 19553778 41 TGCTGCAGGGGGAGCGGCAAGAGCAAAGTGGGCCCTTGGGG TGCTGCAGGGGGAGCGGCAACAGCAAAGTGGGCCCTTGGGG Direct Gain 0 0.951316717494506 0 0.348002910614014 prediction 0.902633434989012 Functional Gain - POTEG ENSG00000222036 CDS Human protein_coding chr14:19553758 chr14:19553758 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_131218 0 0 0 0 0 exosome 0 0.500231643922552 0 0.000463287845103189 hm5C_site_51276 DeepMRMD:0;iRNA_m5C:0.000463287845103189 51277 chr13 70681605 70681605 1 + G C BLCA 70681605 + 70681585 70681625 41 ACGGGGAGGACGATGAAGAGGAAGAGGAGGAAGGCTTCTTC ACGGGGAGGACGATGAAGAGCAAGAGGAGGAAGGCTTCTTC Direct Gain 0 0.951304886264692 0 0.660889506340027 prediction 0.902609772529383 Functional Gain - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681605 chr13:70681605 nonsynonymous SNV 0.690 1 21 hm5C_associated_SNPs_131219 0 0 0 0 0 Nucleus 0 0.500231643921087 0.321779012680054 0.000463287842173976 hm5C_site_51277 DeepMRMD:0.321779012680054;iRNA_m5C:0.000463287842173976 51278 chr16 57786699 57786699 1 + C G BLCA 57786699 - 57786679 57786719 41 CAGCAGCCGTCTGGGTTGAAGAGGACGCTCCTGGGCCAGGC CAGCAGCCGTCTGGGTTGAACAGGACGCTCCTGGGCCAGGC Direct Gain 0 0.951301075359321 0 0.909706354141235 prediction 0.902602150718641 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786699 chr16:57786699 synonymous SNV . 0 21 hm5C_associated_SNPs_131220 0 0 0 0 0 Cytosol 0 0.500231643921119 0.81941270828247 0.000463287842237925 hm5C_site_51278 DeepMRMD:0.81941270828247;iRNA_m5C:0.000463287842237925 51279 chr12 111746135 111746135 1 + C G OV 111746135 - 111746115 111746155 41 GGTGGCAGGGACACTTACCTGGGGGAGGCTGCAGGTGCTGG GGTGGCAGGGACACTTACCTCGGGGAGGCTGCAGGTGCTGG Direct Gain 0 0.951294785295578 0 0.963736593723297 prediction 0.902589570591156 Functional Gain - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111746135 chr12:111746135 nonsynonymous SNV 0.954 4 21 hm5C_associated_SNPs_131221 0 0 0 0 0 exosome 0 0.500231643921101 0.927473187446594 0.000463287842201732 hm5C_site_51279 DeepMRMD:0.927473187446594;iRNA_m5C:0.000463287842201732 51280 chr15 69548309 69548309 1 + G C ESCA 69548309 + 69548289 69548329 41 AGTGGATGGGTTTGAAAAAAGAGCAGCAGCATCTGAGAGTA AGTGGATGGGTTTGAAAAAACAGCAGCAGCATCTGAGAGTA Direct Gain 0 0.95129256611544 0 0.217793673276901 prediction 0.902585132230881 Functional Gain - GLCE ENSG00000138604 CDS Human protein_coding chr15:69548309 chr15:69548309 nonsynonymous SNV 0.981 1 21 hm5C_associated_SNPs_131222 0 0 0 0 0 Ribosome 0 0.50023165887626 0 0.000463317752519066 hm5C_site_51280 DeepMRMD:0;iRNA_m5C:0.000463317752519066 51281 chr2 46611687 46611687 1 + A G UCEC 46611687 - 46611667 46611707 41 TGGTCAGTTCGGGCAGCAGGTAGGACTCAAATGAGGGCCCG TGGTCAGTTCGGGCAGCAGGCAGGACTCAAATGAGGGCCCG Direct Gain 0 0.951276990647167 0 0.83602249622345 prediction 0.902553981294333 Functional Gain - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46611687 chr2:46611687 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_131223 0 0 0 0 0 Cytosol 0 0.500231643919798 0.6720449924469 0.00046328783959626 hm5C_site_51281 DeepMRMD:0.6720449924469;iRNA_m5C:0.00046328783959626 51282 chr12 10468648 10468648 1 + T C rs7966660 10468648 + 10468628 10468668 41 GATCGCTTGAACCTAGGAGGTGGAGGTTGCAGTGAGTCGAG GATCGCTTGAACCTAGGAGGCGGAGGTTGCAGTGAGTCGAG Direct Gain 0 0.951259017947438 0 0.771614134311676 prediction 0.902518035894875 Functional Gain - KLRD1 ENSG00000134539 UTR3 Human protein_coding chr12:10468648 chr12:10468648 . . 0 21 hm5C_associated_SNPs_131224 0 0 0 0 0 exosome 0 0.500231643836045 0.543228268623352 0.000463287672089585 hm5C_site_51282 DeepMRMD:0.543228268623352;iRNA_m5C:0.000463287672089585 51283 chr16 839599 839599 1 + C G rs540916853 839599 - 839579 839619 41 CCGCCTCAGGACGGGATTGCGGGCAGCTGGTGAGGCCCGTG CCGCCTCAGGACGGGATTGCCGGCAGCTGGTGAGGCCCGTG Direct Gain 0 0.951228579951772 0 0.892709970474243 prediction 0.902457159903544 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:839599 chr16:839599 nonsynonymous SNV 0.013 2 21 hm5C_associated_SNPs_131225 0 0 0 0 0 Nucleus 0 0.500231643921092 0.785419940948486 0.000463287842184856 hm5C_site_51283 DeepMRMD:0.785419940948486;iRNA_m5C:0.000463287842184856 51284 chr10 103988782 103988782 1 + A G UCEC 103988782 - 103988762 103988802 41 GATGAGCATGGGCAGCATCTTGGGGGGCTTCACGTTGGCAG GATGAGCATGGGCAGCATCTCGGGGGGCTTCACGTTGGCAG Direct Gain 0 0.951224308329983 0 0.937753975391388 prediction 0.902448616659965 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103988782 chr10:103988782 nonsynonymous SNV 0.029 1 21 hm5C_associated_SNPs_131226 0 0 0 0 0 exosome 0 0.500231643922403 0.875507950782776 0.000463287844806537 hm5C_site_51284 DeepMRMD:0.875507950782776;iRNA_m5C:0.000463287844806537 51285 chr10 45480290 45480290 1 + C G BLCA 45480290 - 45480270 45480310 41 GCTCTTGGTCCGCATCAGCTGGGGGGCCTCCTCTGCCTCCT GCTCTTGGTCCGCATCAGCTCGGGGGCCTCCTCTGCCTCCT Direct Gain 0 0.951198213574556 0 0.93485963344574 prediction 0.902396427149112 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45480290 chr10:45480290 nonsynonymous SNV 0.932 3 21 hm5C_associated_SNPs_131227 0 0 0 0 0 Cytosol 0 0.500231643921092 0.86971926689148 0.000463287842184856 hm5C_site_51285 DeepMRMD:0.86971926689148;iRNA_m5C:0.000463287842184856 51286 chr19 5915141 5915141 1 + C G CESC 5915141 - 5915121 5915161 41 CCACCTGCCCGTCCTTCTCAGAGGAGTCGAAGTTGTCCAGG CCACCTGCCCGTCCTTCTCACAGGAGTCGAAGTTGTCCAGG Direct Gain 0 0.951140858122737 0 0.752159357070923 prediction 0.902281716245474 Functional Gain - CAPS ENSG00000105519 CDS Human protein_coding chr19:5915141 chr19:5915141 nonsynonymous SNV 0.993 0 21 hm5C_associated_SNPs_131228 0 0 0 0 0 chromatin 0 0.500231643921077 0.504318714141846 0.000463287842153992 hm5C_site_51286 DeepMRMD:0.504318714141846;iRNA_m5C:0.000463287842153992 51287 chr6 25776987 25776987 1 + T C HNSC 25776987 + 25776967 25777007 41 ACTGGACACAGGGGTGAACGTGGGAAGCTCAGAGCAGCCTT ACTGGACACAGGGGTGAACGCGGGAAGCTCAGAGCAGCCTT Direct Gain 0 0.951135572567462 0 0.935660302639008 prediction 0.902271145134924 Functional Gain - SLC17A4 ENSG00000146039 CDS Human protein_coding chr6:25776987 chr6:25776987 synonymous SNV . 0 21 hm5C_associated_SNPs_131229 0 0 0 0 0 exosome 0 0.500231643921183 0.871320605278016 0.000463287842365601 hm5C_site_51287 DeepMRMD:0.871320605278016;iRNA_m5C:0.000463287842365601 51288 chr7 30197090 30197090 1 + G C OV 30197090 + 30197070 30197110 41 ATGCAGATGACGATGCGTTTGAAGAGTACAGTGCTGACGTG ATGCAGATGACGATGCGTTTCAAGAGTACAGTGCTGACGTG Direct Gain 0 0.951121660799378 0 0.397308647632599 prediction 0.902243321598757 Functional Gain - MTURN ENSG00000180354 CDS Human protein_coding chr7:30197090 chr7:30197090 nonsynonymous SNV 0.992 2 21 hm5C_associated_SNPs_131230 0 0 1 0 1 Endoplasmic reticulum 0 0.500274014589345 0 0.000548029178689013 hm5C_site_51288 DeepMRMD:0;iRNA_m5C:0.000548029178689013 51289 chr6 15512463 15512463 1 + G C BLCA 15512463 + 15512443 15512483 41 CCCCGGAGGTGCTGTGCAAAGAGGGGATCAAGGTGCACAGG CCCCGGAGGTGCTGTGCAAACAGGGGATCAAGGTGCACAGG Direct Gain 0 0.95111408984821 0 0.851192474365234 prediction 0.90222817969642 Functional Gain - JARID2 ENSG00000008083 CDS Human protein_coding chr6:15512463 chr6:15512463 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_131231 0 0 1 0 1 Cytosol 0 0.500231643921299 0.702384948730468 0.000463287842598081 hm5C_site_51289 DeepMRMD:0.702384948730468;iRNA_m5C:0.000463287842598081 51290 chr6 26273276 26273276 1 + A C BLCA 26273276 + 26273256 26273296 41 CGGTGACCAAGGCACAGAAGAAGGATGGCAAGAAGCGCAAG CGGTGACCAAGGCACAGAAGCAGGATGGCAAGAAGCGCAAG Direct Gain 0 0.951049206266849 0 0.866030216217041 prediction 0.902098412533698 Functional Gain - HIST1H2BI ENSG00000168242 CDS Human other chr6:26273276 chr6:26273276 nonsynonymous SNV 0.959 1 21 hm5C_associated_SNPs_131232 0 0 1 0 0 exosome 0 0.500231643921101 0.732060432434082 0.000463287842201732 hm5C_site_51290 DeepMRMD:0.732060432434082;iRNA_m5C:0.000463287842201732 51291 chr16 57685486 57685486 1 + C G BLCA 57685486 - 57685466 57685506 41 ACTGGGCAGGCTGATGTTCTGAGGGCTCCACCAGGAGGTGA ACTGGGCAGGCTGATGTTCTCAGGGCTCCACCAGGAGGTGA Direct Gain 0 0.951024162500382 0 0.883968353271484 prediction 0.902048325000764 Functional Gain - ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57685486 chr16:57685486 nonsynonymous SNV 0.019 0 21 hm5C_associated_SNPs_131233 0 0 0 0 0 Nucleus 0 0.500231643921094 0.767936706542968 0.000463287842188187 hm5C_site_51291 DeepMRMD:0.767936706542968;iRNA_m5C:0.000463287842188187 51292 chr14 73726151 73726151 1 + A G rs17182244 73726151 - 73726131 73726171 41 GAGGACTGTGTCTGCAGTCGTGGGGCCCTGAGCCCGACCGC GAGGACTGTGTCTGCAGTCGCGGGGCCCTGAGCCCGACCGC Direct Gain 0 0.951006963638587 0 0.967152953147888 prediction 0.902013927277174 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73726151 chr14:73726151 nonsynonymous SNV 0.035 0 21 hm5C_associated_SNPs_131234 0 0 0 0 0 chromatin 0 0.500231643916875 0.934305906295776 0.000463287833750492 hm5C_site_51292 DeepMRMD:0.934305906295776;iRNA_m5C:0.000463287833750492 51293 chr2 174219565 174219565 1 + C G rs558444594 174219565 - 174219545 174219585 41 GGGCGCGCCGACCCGGGCCCGGAGGGGCGGGGCTCGGGCTG GGGCGCGCCGACCCGGGCCCCGAGGGGCGGGGCTCGGGCTG Direct Gain 0 0.950986685309912 0 0.94918692111969 prediction 0.901973370619823 Functional Gain - CDCA7 ENSG00000236391 ncRNA_intronic Human transcribed_processed_pseudogene chr2:174219565 chr2:174219565 . . 0 21 hm5C_associated_SNPs_131235 0 0 0 0 0 Nucleus 0 0.500231643929309 0.89837384223938 0.000463287858617045 hm5C_site_51293 DeepMRMD:0.89837384223938;iRNA_m5C:0.000463287858617045 51294 chr19 48975746 48975746 1 + C G rs2287658 48975746 - 48975726 48975766 41 GAGGGCAGGAGCTGGGTCTGGGGGGTGGGAGGGAGGGGCCC GAGGGCAGGAGCTGGGTCTGCGGGGTGGGAGGGAGGGGCCC Direct Gain 0 0.950981970590295 0 0.921886801719666 prediction 0.90196394118059 Functional Gain - CYTH2 ENSG00000105443 intronic Human protein_coding chr19:48975746 chr19:48975746 . . 0 21 hm5C_associated_SNPs_131236 0 0 0 0 0 Ribosome 0 0.500231643973954 0.843773603439332 0.000463287947908286 hm5C_site_51294 DeepMRMD:0.843773603439332;iRNA_m5C:0.000463287947908286 51295 chr20 57254123 57254123 1 + A C rs147183140 57254123 + 57254103 57254143 41 CTCAGGTTGAGTGGAGGTAGAAGGAGAAACAGACATGTTTA CTCAGGTTGAGTGGAGGTAGCAGGAGAAACAGACATGTTTA Direct Gain 0 0.950957629530111 0 0.942950963973999 prediction 0.901915259060222 Functional Gain - STX16-NPEPL1 ENSG00000124222 UTR3 Human protein_coding chr20:57254123 chr20:57254123 . . 0 21 hm5C_associated_SNPs_131237 0 0 1 0 0 exosome 0 0.500231643921092 0.885901927947998 0.00046328784218419 hm5C_site_51295 DeepMRMD:0.885901927947998;iRNA_m5C:0.00046328784218419 51296 chr11 101981863 101981863 1 + T G UCEC 101981863 - 101981843 101981883 41 TGGGCTCCGGCGGCTTGAAGAAGGAGTCGGGCAGCTTCCGG TGGGCTCCGGCGGCTTGAAGCAGGAGTCGGGCAGCTTCCGG Direct Gain 0 0.950924874740423 0 0.967272520065308 prediction 0.901849749480845 Functional Gain - YAP1 ENSG00000137693 CDS Human protein_coding chr11:101981863 chr11:101981863 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_131238 0 0 0 0 0 Ribosome 0 0.500231643921093 0.934545040130616 0.0004632878421853 hm5C_site_51296 DeepMRMD:0.934545040130616;iRNA_m5C:0.0004632878421853 51297 chr17 19912728 19912728 1 + A C rs138667230 19912728 + 19912708 19912748 41 GGTTGCGGCGGCGCTGAGCCAGCGGGGCCGGTGAGTACTAG GGTTGCGGCGGCGCTGAGCCCGCGGGGCCGGTGAGTACTAG Direct Gain 0 0.95091671780433 0 0.918063998222351 prediction 0.901833435608661 Functional Gain - SPECC1 ENSG00000128487 UTR5 Human protein_coding chr17:19912728 chr17:19912728 . . 0 21 hm5C_associated_SNPs_131239 0 0 0 0 1 Cytosol 0 0.500231643921092 0.836127996444702 0.000463287842184856 hm5C_site_51297 DeepMRMD:0.836127996444702;iRNA_m5C:0.000463287842184856 51298 chr7 150558149 150558149 1 + C G KIRC 150558149 - 150558129 150558169 41 ATGCCAGGGAGGGGTCCTCTGGGAAGAAGTTGAATGGCCGG ATGCCAGGGAGGGGTCCTCTCGGAAGAAGTTGAATGGCCGG Direct Gain 0 0.950906500422816 0 0.932228624820709 prediction 0.901813000845632 Functional Gain - AOC1 ENSG00000002726 CDS Human protein_coding chr7:150558149 chr7:150558149 nonsynonymous SNV 0.620 0 21 hm5C_associated_SNPs_131240 0 0 0 0 0 exosome 0 0.500231643921092 0.864457249641418 0.000463287842184856 hm5C_site_51298 DeepMRMD:0.864457249641418;iRNA_m5C:0.000463287842184856 51299 chr15 78462483 78462483 1 + T C rs137878326 78462483 + 78462463 78462503 41 GCTTGAGCTTGGGCTTAGGCTTGGGCTCAGCTTTTGACCCT GCTTGAGCTTGGGCTTAGGCCTGGGCTCAGCTTTTGACCCT Direct Gain 0 0.950892362991731 0 0.346220314502716 prediction 0.901784725983462 Functional Gain - IDH3A ENSG00000103740;ENSG00000166411 UTR3 Human other chr15:78462483 chr15:78462483 . . 0 21 hm5C_associated_SNPs_131241 0 0 0 0 0 Cytosol 0 0.500231643921092 0 0.000463287842184856 hm5C_site_51299 DeepMRMD:0;iRNA_m5C:0.000463287842184856 51300 chr17 42981504 42981504 1 + T G UCEC 42981504 - 42981484 42981524 41 GCTGAACATGCGGATGCTGAAGCGGGTCAGCATGTCGCTGC GCTGAACATGCGGATGCTGACGCGGGTCAGCATGTCGCTGC Direct Gain 0 0.950887292190911 0 0.778308510780334 prediction 0.901774584381822 Functional Gain - FAM187A ENSG00000214447 CDS Human protein_coding chr17:42981504 chr17:42981504 nonsynonymous SNV 0.897 3 21 hm5C_associated_SNPs_131242 0 0 0 0 0 exosome 0 0.500231643929877 0.556617021560668 0.000463287859754136 hm5C_site_51300 DeepMRMD:0.556617021560668;iRNA_m5C:0.000463287859754136 51301 chr7 26331538 26331538 1 + T G rs540374609 26331538 - 26331518 26331558 41 CCCGCGCTCCCCGCGCACGTAGCGGCCCCGCGCCCGCGCTC CCCGCGCTCCCCGCGCACGTCGCGGCCCCGCGCCCGCGCTC Direct Gain 0 0.950883282988204 0 0.834727048873901 prediction 0.901766565976408 Functional Gain - SNX10 ENSG00000086300 upstream Human protein_coding chr7:26331538 chr7:26331538 . . 0 21 hm5C_associated_SNPs_131243 0 0 0 0 0 membrane 0 0.500231643921092 0.669454097747802 0.000463287842184856 hm5C_site_51301 DeepMRMD:0.669454097747802;iRNA_m5C:0.000463287842184856 51302 chr17 3324806 3324806 1 + G C rs567296268 3324806 + 3324786 3324826 41 GCTCTGTGTCAGCTACTTGTGGGGAAGCGATCACTGACCTG GCTCTGTGTCAGCTACTTGTCGGGAAGCGATCACTGACCTG Direct Gain 0 0.950879109758374 0 0.828131794929504 prediction 0.901758219516748 Functional Gain - OR3A3 ENSG00000159961 CDS Human protein_coding chr17:3324806 chr17:3324806 synonymous SNV . 0 21 hm5C_associated_SNPs_131244 0 0 0 0 0 exosome 0 0.500230803877383 0.656263589859008 0.00046160775476678 hm5C_site_51302 DeepMRMD:0.656263589859008;iRNA_m5C:0.00046160775476678 51303 chr22 23235902 23235902 1 + C G rs554993594 23235902 - 23235882 23235922 41 GCACCTGGGGTCTGCTCTCTGGGGGCTGGGCTGGAGCAGGA GCACCTGGGGTCTGCTCTCTCGGGGCTGGGCTGGAGCAGGA Direct Gain 0 0.95081641008192 0 0.983215093612671 prediction 0.90163282016384 Functional Gain - IGLL5 ENSG00000211674;ENSG00000254709 CDS Human other chr22:23235902 chr22:23235902 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_131245 0 0 0 0 0 exosome 0 0.500231643921092 0.966430187225342 0.000463287842184856 hm5C_site_51303 DeepMRMD:0.966430187225342;iRNA_m5C:0.000463287842184856 51304 chr19 36211795 36211795 1 + A G BLCA 36211795 - 36211775 36211815 41 CTTCAGGAAGGTGGTGCTTTTGGGGGCCACGGTGGGACTGT CTTCAGGAAGGTGGTGCTTTCGGGGGCCACGGTGGGACTGT Direct Gain 0 0.950803406143578 0 0.973594307899475 prediction 0.901606812287157 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36211795 chr19:36211795 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131246 0 0 0 0 0 chromatin 0 0.50023164392106 0.94718861579895 0.000463287842119575 hm5C_site_51304 DeepMRMD:0.94718861579895;iRNA_m5C:0.000463287842119575 51305 chr5 180377133 180377133 1 + G C BLCA 180377133 + 180377113 180377153 41 TGCCGGGATGATGTGGACAGGAGGAAGGAGTACGTGACTTT TGCCGGGATGATGTGGACAGCAGGAAGGAGTACGTGACTTT Direct Gain 0 0.950800609866412 0 0.457002758979797 prediction 0.901601219732824 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180377133 chr5:180377133 nonsynonymous SNV 0.010 2 21 hm5C_associated_SNPs_131247 0 0 0 1 0 chromatin 0 0.500231643920231 0 0.000463287840462012 hm5C_site_51305 DeepMRMD:0;iRNA_m5C:0.000463287840462012 51306 chr2 173832152 173832152 1 + G C CESC 173832152 + 173832132 173832172 41 ATGGGCCCCGACGCCCACATGAGGATGATCCTTCGCAAACC ATGGGCCCCGACGCCCACATCAGGATGATCCTTCGCAAACC Direct Gain 0 0.950793081286388 0 0.894120395183563 prediction 0.901586162572777 Functional Gain - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173832152 chr2:173832152 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131248 0 0 1 0 1 cytosol 0 0.500231643920342 0.788240790367126 0.000463287840683613 hm5C_site_51306 DeepMRMD:0.788240790367126;iRNA_m5C:0.000463287840683613 51307 chr11 92543108 92543108 1 + A G GBM 92543108 - 92543088 92543128 41 CCTCCAGGATTAGGTGGATGTTGGACTGGCAGAACCTGCCA CCTCCAGGATTAGGTGGATGCTGGACTGGCAGAACCTGCCA Direct Gain 0 0.950790560404654 0 0.882767796516418 prediction 0.901581120809309 Functional Gain - FAT3 ENSG00000165323 CDS Human protein_coding chr11:92543108 chr11:92543108 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131249 0 0 0 0 0 nucleoplasm 0 0.500231643921096 0.765535593032836 0.000463287842191296 hm5C_site_51307 DeepMRMD:0.765535593032836;iRNA_m5C:0.000463287842191296 51308 chr14 24878867 24878867 1 + A G UCEC 24878867 - 24878847 24878887 41 CTTCTGAGCCTGGGGAGTTTTTGGAGTTGTGGGTTCCACTT CTTCTGAGCCTGGGGAGTTTCTGGAGTTGTGGGTTCCACTT Direct Gain 0 0.950789401441083 0 0.934501767158508 prediction 0.901578802882166 Functional Gain - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24878867 chr14:24878867 nonsynonymous SNV 0.418 1 21 hm5C_associated_SNPs_131250 0 0 0 0 0 Exosome 0 0.500219791011919 0.869003534317016 0.000439582023838758 hm5C_site_51308 DeepMRMD:0.869003534317016;iRNA_m5C:0.000439582023838758 51309 chr1 156737729 156737729 1 + C G BLCA 156737729 - 156737709 156737749 41 AAAGGCTGGCGCCAGCATCTGAGGGGGCGGAGGCAGCAAGG AAAGGCTGGCGCCAGCATCTCAGGGGGCGGAGGCAGCAAGG Direct Gain 0 0.950785280372137 0 0.926683664321899 prediction 0.901570560744275 Functional Gain - PRCC ENSG00000143294 CDS Human protein_coding chr1:156737729 chr1:156737729 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_131251 0 0 0 0 0 Ribosome 0 0.500231644033673 0.853367328643798 0.000463288067346079 hm5C_site_51309 DeepMRMD:0.853367328643798;iRNA_m5C:0.000463288067346079 51310 chr1 93649596 93649596 1 + T C UCEC 93649596 + 93649576 93649616 41 CAAGGTCTGAAAAGCTAATTTTGGATGTTCAGCCTAGCCAC CAAGGTCTGAAAAGCTAATTCTGGATGTTCAGCCTAGCCAC Direct Gain 0 0.950781733818099 0 0.888035893440247 prediction 0.901563467636198 Functional Gain - CCDC18 ENSG00000122483 CDS Human protein_coding chr1:93649596 chr1:93649596 synonymous SNV . 0 21 hm5C_associated_SNPs_131252 0 0 1 0 0 chromatin 0 0.500231660550724 0.776071786880494 0.0004633211014482 hm5C_site_51310 DeepMRMD:0.776071786880494;iRNA_m5C:0.0004633211014482 51311 chr20 58569540 58569540 1 + T C HNSC 58569540 + 58569520 58569560 41 ACATGGAAGTTGGGGAGAAATTGGGGTGAGTTTTTGTATTG ACATGGAAGTTGGGGAGAAACTGGGGTGAGTTTTTGTATTG Direct Gain 0 0.950774714178565 0 0.677741706371307 prediction 0.901549428357131 Functional Gain - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58569540 chr20:58569540 synonymous SNV . 0 21 hm5C_associated_SNPs_131253 0 0 0 0 1 nucleoplasm 0 0.500238957052942 0.355483412742614 0.000477914105884381 hm5C_site_51311 DeepMRMD:0.355483412742614;iRNA_m5C:0.000477914105884381 51312 chr9 136323154 136323154 1 + A G BRCA 136323154 - 136323134 136323174 41 GTTGGTGGCCAGGGCATGGATGGCAATCCGTGCGTGCGGAG GTTGGTGGCCAGGGCATGGACGGCAATCCGTGCGTGCGGAG Direct Gain 0 0.95073950755073 0 0.738144934177399 prediction 0.90147901510146 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136323154 chr9:136323154 nonsynonymous SNV 0.985 1 21 hm5C_associated_SNPs_131254 0 0 0 0 0 nucleus 0 0.500231643921192 0.476289868354798 0.000463287842383142 hm5C_site_51312 DeepMRMD:0.476289868354798;iRNA_m5C:0.000463287842383142 51313 chr9 134398946 134398946 1 + T C rs11005 134398946 + 134398926 134398966 41 AGCGAGCCCGGCAGGCGTCCTGGGACAGCTCAGTGTTGGAG AGCGAGCCCGGCAGGCGTCCCGGGACAGCTCAGTGTTGGAG Direct Gain 0 0.950684975411934 0 0.809631824493408 prediction 0.901369950823868 Functional Gain - POMT1 ENSG00000130714 UTR3 Human protein_coding chr9:134398946 chr9:134398946 . . 0 21 hm5C_associated_SNPs_131255 1 0 1 0 0 Endoplasmic reticulum 0 0.500231622649435 0.619263648986816 0.000463245298869319 hm5C_site_51313 DeepMRMD:0.619263648986816;iRNA_m5C:0.000463245298869319 Limb-Girdle Muscular Dystrophy, Recessive Limb-Girdle Muscular Dystrophy, Recessive 51314 chr4 27019467 27019467 1 + C G SKCM 27019467 - 27019447 27019487 41 TTGCGGGTGGTGAGGGTGCCGAGGGTGTGACGGGTGGGGGG TTGCGGGTGGTGAGGGTGCCCAGGGTGTGACGGGTGGGGGG Direct Gain 0 0.950682013655586 0 0.922868192195892 prediction 0.901364027311171 Functional Gain - STIM2 ENSG00000109689 CDS Human protein_coding chr4:27019467 chr4:27019467 nonsynonymous SNV 0.379 0 21 hm5C_associated_SNPs_131256 0 0 0 0 0 Nucleus 0 0.500227874706844 0.845736384391784 0.000455749413688977 hm5C_site_51314 DeepMRMD:0.845736384391784;iRNA_m5C:0.000455749413688977 51315 chr17 57047015 57047015 1 + A G UCEC 57047015 - 57046995 57047035 41 ACAGGGCCTCAGCAGGATCATGGGGGAACATCTCCTGGCGG ACAGGGCCTCAGCAGGATCACGGGGGAACATCTCCTGGCGG Direct Gain 0 0.95067968152642 0 0.932121515274048 prediction 0.901359363052841 Functional Gain - PPM1E ENSG00000175175 CDS Human protein_coding chr17:57047015 chr17:57047015 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_131257 0 0 1 0 0 Cytosol 0 0.500231603233855 0.864243030548096 0.000463206467709032 hm5C_site_51315 DeepMRMD:0.864243030548096;iRNA_m5C:0.000463206467709032 51316 chr17 80395010 80395010 1 + C G rs200236892 80395010 - 80394990 80395030 41 CAAACAGGTGAGTGGCTCCAGGGGAGGCGGCCAACACGGCC CAAACAGGTGAGTGGCTCCACGGGAGGCGGCCAACACGGCC Direct Gain 0 0.950673307723728 0 0.751895785331726 prediction 0.901346615447456 Functional Gain - HEXDC ENSG00000169660 intronic Human protein_coding chr17:80395010 chr17:80395010 . . 0 21 hm5C_associated_SNPs_131258 0 0 0 0 0 Ribosome 0 0.50023164436727 0.503791570663452 0.000463288734539047 hm5C_site_51316 DeepMRMD:0.503791570663452;iRNA_m5C:0.000463288734539047 51317 chr9 127566549 127566549 1 + A G STAD 127566549 - 127566529 127566569 41 GGTGGGGGTTGGGGTGGTGGTGGCGGTGGTGGTGGTGGCAG GGTGGGGGTTGGGGTGGTGGCGGCGGTGGTGGTGGTGGCAG Direct Gain 0 0.950672505596356 0 0.962713539600372 prediction 0.901345011192712 Functional Gain - OLFML2A ENSG00000185585 CDS Human protein_coding chr9:127566549 chr9:127566549 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_131259 0 0 0 0 0 Nucleus 0 0.500231643921092 0.925427079200744 0.000463287842184856 hm5C_site_51317 DeepMRMD:0.925427079200744;iRNA_m5C:0.000463287842184856 51318 chr9 132265851 132265851 1 + C G rs552627183 132265851 - 132265831 132265871 41 GATGGCCTGCATGAGGAATGGGCGGTGAGCATCCTCCTTCC GATGGCCTGCATGAGGAATGCGCGGTGAGCATCCTCCTTCC Direct Gain 0 0.95066474570478 0 0.778984665870667 prediction 0.90132949140956 Functional Gain - LINC00963 ENSG00000204054 ncRNA_exonic Human processed_transcript chr9:132265851 chr9:132265851 . . 0 21 hm5C_associated_SNPs_131260 0 0 0 0 0 unknown 0 0.500231643921093 0.557969331741334 0.000463287842186855 hm5C_site_51318 DeepMRMD:0.557969331741334;iRNA_m5C:0.000463287842186855 51319 chr10 106035050 106035050 1 + A G UCEC 106035050 - 106035030 106035070 41 CGAGGCGGGTCCTGTGAGAATAGGGGCAGAACCTCATGCTG CGAGGCGGGTCCTGTGAGAACAGGGGCAGAACCTCATGCTG Direct Gain 0 0.950662067974767 0 0.872194290161133 prediction 0.901324135949535 Functional Gain - GSTO2 ENSG00000065621 CDS Human protein_coding chr10:106035050 chr10:106035050 nonsynonymous SNV 0.540 1 21 hm5C_associated_SNPs_131261 0 0 0 0 0 Cytosol 0 0.500231643921198 0.744388580322266 0.000463287842395133 hm5C_site_51319 DeepMRMD:0.744388580322266;iRNA_m5C:0.000463287842395133 51320 chr9 110046337 110046337 1 + G C rs72736194 110046337 + 110046317 110046357 41 TCTGGTATGGGTGCACAGGTGGGGGAGGGAGACGTAGGCGT TCTGGTATGGGTGCACAGGTCGGGGAGGGAGACGTAGGCGT Direct Gain 0 0.950644636645102 0 0.850311994552612 prediction 0.901289273290205 Functional Gain - RAD23B ENSG00000119318 UTR5 Human protein_coding chr9:110046337 chr9:110046337 . . 0 21 hm5C_associated_SNPs_131262 0 0 1 0 0 Ribosome 0 0.500231624355012 0.700623989105224 0.000463248710023123 hm5C_site_51320 DeepMRMD:0.700623989105224;iRNA_m5C:0.000463248710023123 51321 chr19 35175728 35175728 1 + T C UCEC 35175728 + 35175708 35175748 41 CCTTACAAATGCATTGAATGTGGGAAGGCCTTTAGCCATGG CCTTACAAATGCATTGAATGCGGGAAGGCCTTTAGCCATGG Direct Gain 0 0.950603823408646 0 0.863298654556274 prediction 0.901207646817292 Functional Gain - ZNF302 ENSG00000089335 CDS Human protein_coding chr19:35175728 chr19:35175728 synonymous SNV . 0 21 hm5C_associated_SNPs_131263 0 0 1 0 0 exosome 0 0.500231645387086 0.726597309112548 0.000463290774171288 hm5C_site_51321 DeepMRMD:0.726597309112548;iRNA_m5C:0.000463290774171288 51322 chrX 129060054 129060054 1 + G C LUSC 129060054 + 129060034 129060074 41 GCTGGGGCGAGTGGGGTGGTGTGGGCCTAAAGCCCAGTGCC GCTGGGGCGAGTGGGGTGGTCTGGGCCTAAAGCCCAGTGCC Direct Gain 0 0.95059512672631 0 0.926063299179077 prediction 0.90119025345262 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129060054 chrX:129060054 nonsynonymous SNV 0.952 0 21 hm5C_associated_SNPs_131264 0 0 1 0 1 Cytosol 0 0.500231643921092 0.852126598358154 0.000463287842184856 hm5C_site_51322 DeepMRMD:0.852126598358154;iRNA_m5C:0.000463287842184856 51323 chr5 57790721 57790721 1 + T C BLCA 57790721 + 57790701 57790741 41 AAAACACAGGGCAGTCTAATTTCGAGGAGCATATCTATGGA AAAACACAGGGCAGTCTAATCTCGAGGAGCATATCTATGGA Direct Gain 0 0.950588482691324 0 0.905395269393921 prediction 0.901176965382647 Functional Gain - GAPT ENSG00000175857 CDS Human protein_coding chr5:57790721 chr5:57790721 nonsynonymous SNV 0.014 0 21 hm5C_associated_SNPs_131265 0 0 0 0 0 exosome 0 0.500231645438043 0.810790538787842 0.000463290876085098 hm5C_site_51323 DeepMRMD:0.810790538787842;iRNA_m5C:0.000463290876085098 51324 chr19 746432 746432 1 + A C SKCM 746432 + 746412 746452 41 AGAGACCCGGGGGGCTGTGGAGGGGGCAGCCCGGACCACGC AGAGACCCGGGGGGCTGTGGCGGGGGCAGCCCGGACCACGC Direct Gain 0 0.950555375858572 0 0.986619472503662 prediction 0.901110751717143 Functional Gain - PALM ENSG00000099864 CDS Human protein_coding chr19:746432 chr19:746432 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131266 0 0 0 0 0 Cytosol 0 0.500231643921092 0.973238945007324 0.000463287842184856 hm5C_site_51324 DeepMRMD:0.973238945007324;iRNA_m5C:0.000463287842184856 51325 chr3 39129649 39129649 1 + A C UCEC 39129649 + 39129629 39129669 41 GCAGGAGAACCGAGTGCAGAAGGGAAATGGATATTTTCAAG GCAGGAGAACCGAGTGCAGACGGGAAATGGATATTTTCAAG Direct Gain 0 0.950547488645125 0 0.599987387657166 prediction 0.90109497729025 Functional Gain - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39129649 chr3:39129649 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_131267 0 0 1 0 2 Ribosome 0 0.500231750830039 0.199974775314332 0.000463501660078469 hm5C_site_51325 DeepMRMD:0.199974775314332;iRNA_m5C:0.000463501660078469 51326 chrX 153037665 153037665 1 + A G UCEC 153037665 - 153037645 153037685 41 GACGGGCCCAGTGGTGCCATTGGGGGCAGGAGATGTCACAC GACGGGCCCAGTGGTGCCATCGGGGGCAGGAGATGTCACAC Direct Gain 0 0.950538929486903 0 0.982219219207764 prediction 0.901077858973806 Functional Gain - PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153037665 chrX:153037665 nonsynonymous SNV 0.521 0 21 hm5C_associated_SNPs_131268 0 0 0 0 0 Endoplasmic reticulum 0 0.500231648648005 0.964438438415528 0.000463297296010801 hm5C_site_51326 DeepMRMD:0.964438438415528;iRNA_m5C:0.000463297296010801 51327 chr15 72767244 72767244 1 + T C rs373373660 72767244 + 72767224 72767264 41 GGCGGCGGCGGCGGTGGTGGTGGCGGGCCGGGGCATGAGCA GGCGGCGGCGGCGGTGGTGGCGGCGGGCCGGGGCATGAGCA Direct Gain 0 0.950530877588072 0 0.961838603019714 prediction 0.901061755176145 Functional Gain - ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72767244 chr15:72767244 synonymous SNV . 0 21 hm5C_associated_SNPs_131269 0 0 1 0 0 Cytosol 0 0.500231643921092 0.923677206039428 0.000463287842184856 hm5C_site_51327 DeepMRMD:0.923677206039428;iRNA_m5C:0.000463287842184856 51328 chr1 245849545 245849545 1 + A G UCEC 245849545 - 245849525 245849565 41 GGGTGTAGACTTTGCATCTCTGGGAAGGAGAGCTGGGTGGC GGGTGTAGACTTTGCATCTCCGGGAAGGAGAGCTGGGTGGC Direct Gain 0 0.950517138323345 0 0.888490915298462 prediction 0.901034276646689 Functional Gain - KIF26B ENSG00000162849 CDS Human protein_coding chr1:245849545 chr1:245849545 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131270 0 0 0 0 0 insoluble cytoplasm 0 0.500231644270865 0.776981830596924 0.000463288541730833 hm5C_site_51328 DeepMRMD:0.776981830596924;iRNA_m5C:0.000463288541730833 51329 chr17 42148182 42148182 1 + T C rs149756661 42148182 + 42148162 42148202 41 TTGCAGGAGCGGGGGACTGCTGGGGGCGGGGCTTGGTGGTG TTGCAGGAGCGGGGGACTGCCGGGGGCGGGGCTTGGTGGTG Direct Gain 0 0.950507548210536 0 0.965040504932404 prediction 0.901015096421072 Functional Gain - G6PC3 ENSG00000141349 UTR5 Human protein_coding chr17:42148182 chr17:42148182 . . 0 21 hm5C_associated_SNPs_131271 1 0 0 0 0 Ribosome 0 0.500231643921092 0.930081009864808 0.000463287842184856 hm5C_site_51329 DeepMRMD:0.930081009864808;iRNA_m5C:0.000463287842184856 Severe congenital neutropenia Severe congenital neutropenia 51330 chr3 136708386 136708386 1 + G C BLCA 136708386 + 136708366 136708406 41 GAGTTCCTTGTGGCCTACTGGAGGAGGGAGCCTGGTGCCGA GAGTTCCTTGTGGCCTACTGCAGGAGGGAGCCTGGTGCCGA Direct Gain 0 0.950501329903078 0 0.84898966550827 prediction 0.901002659806157 Functional Gain - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136708386 chr3:136708386 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131272 0 0 0 0 1 nucleoplasm 0 0.500231644086018 0.69797933101654 0.000463288172036114 hm5C_site_51330 DeepMRMD:0.69797933101654;iRNA_m5C:0.000463288172036114 51331 chr1 18152566 18152566 1 + T C BLCA 18152566 + 18152546 18152586 41 GTGCTACGTGCCGCAGAATCTGGGGGAGGCCCTGGACTTTC GTGCTACGTGCCGCAGAATCCGGGGGAGGCCCTGGACTTTC Direct Gain 0 0.950487079612152 0 0.948846459388733 prediction 0.900974159224304 Functional Gain - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18152566 chr1:18152566 nonsynonymous SNV 0.038 1 21 hm5C_associated_SNPs_131273 0 0 0 0 0 unknown 0 0.500231617946033 0.897692918777466 0.000463235892065539 hm5C_site_51331 DeepMRMD:0.897692918777466;iRNA_m5C:0.000463235892065539 51332 chr9 35792632 35792632 1 + C G BRCA 35792632 - 35792612 35792652 41 TCAGCGGTGCCAGGTACTCAGAGCAGGCGCCTTCCAGTTCG TCAGCGGTGCCAGGTACTCACAGCAGGCGCCTTCCAGTTCG Direct Gain 0 0.950468065766035 0 0.477328151464462 prediction 0.90093613153207 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35792632 chr9:35792632 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131274 0 0 0 0 0 chromatin 0 0.500231643921093 0 0.000463287842185078 hm5C_site_51332 DeepMRMD:0;iRNA_m5C:0.000463287842185078 51333 chr6 151152607 151152607 1 + A G rs17080381 151152607 - 151152587 151152627 41 CACTGAGCTGGAGGCTGTCTTGGGAAACAAATGGCCTCAGG CACTGAGCTGGAGGCTGTCTCGGGAAACAAATGGCCTCAGG Direct Gain 0 0.950434998762251 0 0.954380631446838 prediction 0.900869997524502 Functional Gain - PLEKHG1 ENSG00000120278 CDS Human protein_coding chr6:151152607 chr6:151152607 nonsynonymous SNV 0.960 2 21 hm5C_associated_SNPs_131275 0 0 0 0 0 exosome 0 0.500231644569654 0.908761262893676 0.000463289139308154 hm5C_site_51333 DeepMRMD:0.908761262893676;iRNA_m5C:0.000463289139308154 51334 chr3 152554066 152554066 1 + G C CESC 152554066 + 152554046 152554086 41 TCCCTGGGCCGGCTCAAAAAGAAGAATGCGATCTGTATCAG TCCCTGGGCCGGCTCAAAAACAAGAATGCGATCTGTATCAG Direct Gain 0 0.950412785033223 0 0.785010576248169 prediction 0.900825570066447 Functional Gain - P2RY1 ENSG00000169860 CDS Human protein_coding chr3:152554066 chr3:152554066 nonsynonymous SNV 0.839 2 21 hm5C_associated_SNPs_131276 0 0 1 0 0 Endoplasmic reticulum 0 0.500231643921087 0.570021152496338 0.000463287842174198 hm5C_site_51334 DeepMRMD:0.570021152496338;iRNA_m5C:0.000463287842174198 51335 chr16 681325 681325 1 + A G rs142058878 681325 - 681305 681345 41 CCCGGGTGGCTCCCCAGCCCTGGCAGCAAGCCAGCCCCCGA CCCGGGTGGCTCCCCAGCCCCGGCAGCAAGCCAGCCCCCGA Direct Gain 0 0.950365801710971 0 0.378981471061707 prediction 0.900731603421942 Functional Gain - WFIKKN1 ENSG00000127578 CDS Human protein_coding chr16:681325 chr16:681325 synonymous SNV . 0 21 hm5C_associated_SNPs_131277 0 0 0 0 0 exosome 0 0.500231643921093 0 0.000463287842185078 hm5C_site_51335 DeepMRMD:0;iRNA_m5C:0.000463287842185078 51336 chr21 41151098 41151098 1 + T C SKCM 41151098 + 41151078 41151118 41 ATTGCCTACTTGGGGCAAAGTTGGACTTGGACTAGCAGGCA ATTGCCTACTTGGGGCAAAGCTGGACTTGGACTAGCAGGCA Direct Gain 0 0.950350381757851 0 0.782698512077332 prediction 0.900700763515702 Functional Gain - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41151098 chr21:41151098 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_131278 0 0 0 0 1 exosome 0 0.500231643921722 0.565397024154664 0.000463287843444737 hm5C_site_51336 DeepMRMD:0.565397024154664;iRNA_m5C:0.000463287843444737 51337 chr19 13059147 13059147 1 + A G rs11558955 13059147 - 13059127 13059167 41 CACAGACTCTGGGGACGTCGTGGGGGCGGATTCCTCTGATG CACAGACTCTGGGGACGTCGCGGGGGCGGATTCCTCTGATG Direct Gain 0 0.950345666201673 0 0.971874833106995 prediction 0.900691332403346 Functional Gain - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059147 chr19:13059147 nonsynonymous SNV 0.206 0 21 hm5C_associated_SNPs_131279 0 0 0 0 0 Ribosome 0 0.500231643921068 0.94374966621399 0.000463287842136895 hm5C_site_51337 DeepMRMD:0.94374966621399;iRNA_m5C:0.000463287842136895 51338 chr5 141488364 141488364 1 + G C rs3761759 141488364 + 141488344 141488384 41 AGGGGCCGCGTCGGAGCCTCGGCGGCGGCGGCGGTGCTTAC AGGGGCCGCGTCGGAGCCTCCGCGGCGGCGGCGGTGCTTAC Direct Gain 0 0.950345513021479 0 0.913076460361481 prediction 0.900691026042958 Functional Gain - NDFIP1 ENSG00000131507 UTR5 Human protein_coding chr5:141488364 chr5:141488364 . . 0 21 hm5C_associated_SNPs_131280 0 0 1 0 0 Ribosome 0 0.500231643921427 0.826152920722962 0.000463287842853877 hm5C_site_51338 DeepMRMD:0.826152920722962;iRNA_m5C:0.000463287842853877 51339 chr6 43472651 43472651 1 + C G LUSC 43472651 - 43472631 43472671 41 CTGCCTGACTGGGCTGAATTGAGCAGTAGAGACTCCGGCTT CTGCCTGACTGGGCTGAATTCAGCAGTAGAGACTCCGGCTT Direct Gain 0 0.950317866827775 0 0.827452540397644 prediction 0.900635733655551 Functional Gain - TJAP1 ENSG00000137221 CDS Human protein_coding chr6:43472651 chr6:43472651 synonymous SNV . 0 21 hm5C_associated_SNPs_131281 0 0 0 0 0 chromatin 0 0.500231643577072 0.654905080795288 0.000463287154143899 hm5C_site_51339 DeepMRMD:0.654905080795288;iRNA_m5C:0.000463287154143899 51340 chr4 2471499 2471499 1 + G C rs143635667 2471499 + 2471479 2471519 41 GTACGGGTGCGGGCCTGACCGTGGGGGCGCCGAGGTCGCAG GTACGGGTGCGGGCCTGACCCTGGGGGCGCCGAGGTCGCAG Direct Gain 0 0.950308042411241 0 0.818479478359222 prediction 0.900616084822482 Functional Gain - RNF4 ENSG00000063978 UTR5 Human protein_coding chr4:2471499 chr4:2471499 . . 0 21 hm5C_associated_SNPs_131282 0 0 1 0 0 Ribosome 0 0.500231643657295 0.636958956718444 0.000463287314590888 hm5C_site_51340 DeepMRMD:0.636958956718444;iRNA_m5C:0.000463287314590888 51341 chr7 64853783 64853783 1 + G C UCEC 64853783 + 64853763 64853803 41 GGAAAAGAGCCCTGGAATCTGAAGAGACATGAGATGGTAGA GGAAAAGAGCCCTGGAATCTCAAGAGACATGAGATGGTAGA Direct Gain 0 0.950289024556562 0 0.918659329414368 prediction 0.900578049113125 Functional Gain - ZNF92 ENSG00000146757 CDS Human protein_coding chr7:64853783 chr7:64853783 synonymous SNV . 0 21 hm5C_associated_SNPs_131283 0 0 1 0 2 Cytosol 0 0.500231643921237 0.837318658828736 0.000463287842474625 hm5C_site_51341 DeepMRMD:0.837318658828736;iRNA_m5C:0.000463287842474625 51342 chr19 39993679 39993679 1 + G C rs572869684 39993679 + 39993659 39993699 41 GCCCCTGCGCACCGCTCGAGGACGAATGTGAGGCGCCGCGT GCCCCTGCGCACCGCTCGAGCACGAATGTGAGGCGCCGCGT Direct Gain 0 0.950276858855599 0 0.364154577255249 prediction 0.900553717711197 Functional Gain - DLL3 ENSG00000090932 CDS Human protein_coding chr19:39993679 chr19:39993679 nonsynonymous SNV 0.280 1 21 hm5C_associated_SNPs_131284 0 0 0 0 1 exosome 0 0.500231602651624 0 0.000463205303247172 hm5C_site_51342 DeepMRMD:0;iRNA_m5C:0.000463205303247172 51343 chr5 148682009 148682009 1 + A G rs149041522 148682009 - 148681989 148682029 41 AGTCCTCAGGGGGAGGCTTGTTGGGGAGCGGTGGAGGCAGG AGTCCTCAGGGGGAGGCTTGCTGGGGAGCGGTGGAGGCAGG Direct Gain 0 0.950260009339079 0 0.869467556476593 prediction 0.900520018678157 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148682009 chr5:148682009 nonsynonymous SNV 0.209 0 21 hm5C_associated_SNPs_131285 0 0 0 0 0 exosome 0 0.500231643921094 0.738935112953186 0.000463287842187743 hm5C_site_51343 DeepMRMD:0.738935112953186;iRNA_m5C:0.000463287842187743 51344 chr15 45248926 45248926 1 + G C STAD 45248926 + 45248906 45248946 41 TTGGCGACGCCATGTTTCAAGGGCAGCGCGGTTGGTTTTGC TTGGCGACGCCATGTTTCAACGGCAGCGCGGTTGGTTTTGC Direct Gain 0 0.950227858468505 0 0.592611372470856 prediction 0.90045571693701 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45248926 chr15:45248926 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_131286 0 0 0 0 1 unknown 0 0.500231643921092 0.185222744941712 0.000463287842184634 hm5C_site_51344 DeepMRMD:0.185222744941712;iRNA_m5C:0.000463287842184634 51345 chr16 682653 682653 1 + C G STAD 682653 - 682633 682673 41 GTCGGCGCAGCTGGGCTGCCGGGGAAGCGTGCTGCCACGCA GTCGGCGCAGCTGGGCTGCCCGGGAAGCGTGCTGCCACGCA Direct Gain 0 0.950214401049306 0 0.829762578010559 prediction 0.900428802098612 Functional Gain - WFIKKN1 ENSG00000127578 CDS Human protein_coding chr16:682653 chr16:682653 synonymous SNV . 0 21 hm5C_associated_SNPs_131287 0 0 0 0 0 exosome 0 0.500231643921906 0.659525156021118 0.000463287843811111 hm5C_site_51345 DeepMRMD:0.659525156021118;iRNA_m5C:0.000463287843811111 51346 chr19 50334032 50334032 1 + C G BLCA 50334032 - 50334012 50334052 41 TGGGGGCGCCAGGGGGTCCTGGGGGTAGTTGGGGAGCTGGG TGGGGGCGCCAGGGGGTCCTCGGGGTAGTTGGGGAGCTGGG Direct Gain 0 0.950213087381385 0 0.96542763710022 prediction 0.90042617476277 Functional Gain - MED25 ENSG00000104973 CDS Human protein_coding chr19:50334032 chr19:50334032 nonsynonymous SNV 0.116 3 21 hm5C_associated_SNPs_131288 0 0 0 0 0 chromatin 0 0.500231643921092 0.93085527420044 0.000463287842184856 hm5C_site_51346 DeepMRMD:0.93085527420044;iRNA_m5C:0.000463287842184856 51347 chr16 88497446 88497446 1 + A G rs7197071 88497446 - 88497426 88497466 41 TGAGGGGCGATCAGCACACTTGGGGCCTCCCTCCCTGGCGG TGAGGGGCGATCAGCACACTCGGGGCCTCCCTCCCTGGCGG Direct Gain 0 0.950207821644997 0 0.875059485435486 prediction 0.900415643289993 Functional Gain - ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88497446 chr16:88497446 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131289 2 0 0 0 0 exosome 0 0.500231644261537 0.750118970870972 0.000463288523073091 hm5C_site_51347 DeepMRMD:0.750118970870972;iRNA_m5C:0.000463288523073091 not specified not specified 51348 chr4 155665532 155665532 1 + C G BLCA 155665532 - 155665512 155665552 41 AAGAGCGTGAAGTTGGAGATGAGGAGCAGCTTCTCCAGTAG AAGAGCGTGAAGTTGGAGATCAGGAGCAGCTTCTCCAGTAG Direct Gain 0 0.950207389355428 0 0.82660961151123 prediction 0.900414778710856 Functional Gain - LRAT ENSG00000121207 CDS Human protein_coding chr4:155665532 chr4:155665532 synonymous SNV . 0 21 hm5C_associated_SNPs_131290 0 0 0 0 0 Nucleus 0 0.500231642560939 0.65321922302246 0.000463285121878654 hm5C_site_51348 DeepMRMD:0.65321922302246;iRNA_m5C:0.000463285121878654 51349 chr19 30502084 30502084 1 + T C COAD 30502084 + 30502064 30502104 41 CGTAAACGAAAGAACAGCACTGGCAGTGGCCACTCTGCCCA CGTAAACGAAAGAACAGCACCGGCAGTGGCCACTCTGCCCA Direct Gain 0 0.950206525478915 0 0.710090696811676 prediction 0.90041305095783 Functional Gain - URI1 ENSG00000105176 CDS Human protein_coding chr19:30502084 chr19:30502084 synonymous SNV . 0 21 hm5C_associated_SNPs_131291 0 0 1 0 2 Cytosol 0 0.5002316437634 0.420181393623352 0.000463287526800471 hm5C_site_51349 DeepMRMD:0.420181393623352;iRNA_m5C:0.000463287526800471 51350 chr14 64681103 64681103 1 + C G rs150363140 64681103 - 64681083 64681123 41 CCTGTGTGGTCCCACTCCAGGGGGATGGAGTCCACGCTGAC CCTGTGTGGTCCCACTCCAGCGGGATGGAGTCCACGCTGAC Direct Gain 0 0.950201826462467 0 0.945019483566284 prediction 0.900403652924934 Functional Gain - SYNE2 ENSG00000054654 CDS Human protein_coding chr14:64681103 chr14:64681103 synonymous SNV . 0 21 hm5C_associated_SNPs_131292 2 0 0 0 0 Nucleus 0 0.500231643921093 0.890038967132568 0.000463287842186411 hm5C_site_51350 DeepMRMD:0.890038967132568;iRNA_m5C:0.000463287842186411 not specified not specified 51351 chr7 43830888 43830888 1 + T C rs1802846 43830888 + 43830868 43830908 41 ATGGAGTCCAGCAGATTTCTTTGGAGGATGCTCTTTCCAGC ATGGAGTCCAGCAGATTTCTCTGGAGGATGCTCTTTCCAGC Direct Gain 0 0.950196430384263 0 0.879564762115479 prediction 0.900392860768527 Functional Gain - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43830888 chr7:43830888 synonymous SNV . 0 21 hm5C_associated_SNPs_131293 0 0 1 0 2 Ribosome 0 0.500231644170944 0.759129524230958 0.000463288341888246 hm5C_site_51351 DeepMRMD:0.759129524230958;iRNA_m5C:0.000463288341888246 51352 chrX 149013320 149013320 1 + G C LUSC 149013320 + 149013300 149013340 41 AGGGTTCCAGCAGCAATGAAGAGGAGGGGCCAAGCACCTCC AGGGTTCCAGCAGCAATGAACAGGAGGGGCCAAGCACCTCC Direct Gain 0 0.95018344957144 0 0.929653644561768 prediction 0.900366899142881 Functional Gain - MAGEA8 ENSG00000156009 CDS Human protein_coding chrX:149013320 chrX:149013320 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131294 0 0 0 0 0 exosome 0 0.500231643921092 0.859307289123536 0.000463287842184856 hm5C_site_51352 DeepMRMD:0.859307289123536;iRNA_m5C:0.000463287842184856 51353 chr12 132334445 132334445 1 + T G LUAD 132334445 - 132334425 132334465 41 GTCATTGTGGGCCCAGGAGAAGGCAGCGTCGATGCCGCCAG GTCATTGTGGGCCCAGGAGACGGCAGCGTCGATGCCGCCAG Direct Gain 0 0.950179779685067 0 0.862540364265442 prediction 0.900359559370133 Functional Gain - MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334445 chr12:132334445 nonsynonymous SNV 0.954 3 21 hm5C_associated_SNPs_131295 0 0 0 0 0 Cytosol 0 0.500222760549686 0.725080728530884 0.000445521099371016 hm5C_site_51353 DeepMRMD:0.725080728530884;iRNA_m5C:0.000445521099371016 51354 chr3 130745968 130745968 1 + C G rs141930794 130745968 - 130745948 130745988 41 GGTAAGATGTCCAGGAAAGCGAGGAGATCGCAGCCATGGCG GGTAAGATGTCCAGGAAAGCCAGGAGATCGCAGCCATGGCG Direct Gain 0 0.950174327189521 0 0.812644183635712 prediction 0.900348654379043 Functional Gain - NEK11 ENSG00000034533;ENSG00000114670 intronic Human other chr3:130745968 chr3:130745968 . . 0 21 hm5C_associated_SNPs_131296 0 0 0 0 0 chromatin 0 0.500231643921092 0.625288367271424 0.000463287842184856 hm5C_site_51354 DeepMRMD:0.625288367271424;iRNA_m5C:0.000463287842184856 51355 chr16 89289580 89289580 1 + G C BLCA 89289580 + 89289560 89289600 41 TTTAGGACGCGGTGACCTTTGACGACGTGGCTGTGGACTTC TTTAGGACGCGGTGACCTTTCACGACGTGGCTGTGGACTTC Direct Gain 0 0.950162280517711 0 0.414456963539124 prediction 0.900324561035423 Functional Gain - ZNF778 ENSG00000170100 CDS Human protein_coding chr16:89289580 chr16:89289580 nonsynonymous SNV 0.225 2 21 hm5C_associated_SNPs_131297 0 0 1 0 1 chromatin 0 0.500231645268115 0 0.000463290536229621 hm5C_site_51355 DeepMRMD:0;iRNA_m5C:0.000463290536229621 51356 chr21 43719929 43719929 1 + A G rs6586303 43719929 - 43719909 43719949 41 CACTGGAGGGCAAGCCCACGTTGGAGTCCCCTCCCCCTCAC CACTGGAGGGCAAGCCCACGCTGGAGTCCCCTCCCCCTCAC Direct Gain 0 0.950148907065327 0 0.860901355743408 prediction 0.900297814130654 Functional Gain - ABCG1;TFF3 ENSG00000216197 downstream Human other chr21:43719929 chr21:43719929 . . 0 21 hm5C_associated_SNPs_131298 0 0 0 0 0 unknown 0 0.500231643935086 0.721802711486816 0.00046328787017158 hm5C_site_51356 DeepMRMD:0.721802711486816;iRNA_m5C:0.00046328787017158 51357 chr17 6012984 6012984 1 + C G LUAD 6012984 - 6012964 6013004 41 GGCATCCCGCAGGTTGAACCGGGGGGTAGGGTAAGCACAGT GGCATCCCGCAGGTTGAACCCGGGGGTAGGGTAAGCACAGT Direct Gain 0 0.950143261349819 0 0.939145505428314 prediction 0.900286522699637 Functional Gain - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6012984 chr17:6012984 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_131299 0 0 0 0 0 exosome 0 0.500231643921105 0.878291010856628 0.000463287842209059 hm5C_site_51357 DeepMRMD:0.878291010856628;iRNA_m5C:0.000463287842209059 51358 chr8 42884386 42884386 1 + A G rs61733908 42884386 - 42884366 42884406 41 GCAGGAGAATAGCTTGAACCTGGGAGGCGGAGGTTGCAGTG GCAGGAGAATAGCTTGAACCCGGGAGGCGGAGGTTGCAGTG Direct Gain 0 0.950126415006733 0 0.935899436473846 prediction 0.900252830013466 Functional Gain - HOOK3 ENSG00000168172 UTR3 Human protein_coding chr8:42884386 chr8:42884386 . . 0 21 hm5C_associated_SNPs_131300 0 0 0 0 0 Ribosome 0 0.500231643921092 0.871798872947692 0.000463287842184856 hm5C_site_51358 DeepMRMD:0.871798872947692;iRNA_m5C:0.000463287842184856 51359 chr5 140711878 140711878 1 + A G UCEC 140711878 - 140711858 140711898 41 GCTGAGAGACACGTTGCTGCTGAGGGGCGGATCCCCACTGT GCTGAGAGACACGTTGCTGCCGAGGGGCGGATCCCCACTGT Direct Gain 0 0.950118211251553 0 0.956503987312317 prediction 0.900236422503107 Functional Gain - PCDHGA1 ENSG00000204956 CDS Human protein_coding chr5:140711878 chr5:140711878 nonsynonymous SNV 0.707 2 21 hm5C_associated_SNPs_131301 0 0 0 0 0 exosome 0 0.500233593972069 0.913007974624634 0.000467187944137359 hm5C_site_51359 DeepMRMD:0.913007974624634;iRNA_m5C:0.000467187944137359 51360 chr2 102968076 102968076 1 + A C LIHC 102968076 + 102968056 102968096 41 CCCCTCAGATCACTCACAATAAGGAGTTTGCCTACGAGCAG CCCCTCAGATCACTCACAATCAGGAGTTTGCCTACGAGCAG Direct Gain 0 0.950113791043015 0 0.954075396060944 prediction 0.90022758208603 Functional Gain - IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102968076 chr2:102968076 nonsynonymous SNV 0.027 0 21 hm5C_associated_SNPs_131302 0 0 0 0 1 Endoplasmic reticulum 0 0.500237889368427 0.908150792121888 0.000475778736854338 hm5C_site_51360 DeepMRMD:0.908150792121888;iRNA_m5C:0.000475778736854338 51361 chr11 48266895 48266895 1 + A C STAD 48266895 + 48266875 48266915 41 ATCTCAGATCTGCTGGCTGAAAGGAAAGTCATATCTTGGTG ATCTCAGATCTGCTGGCTGACAGGAAAGTCATATCTTGGTG Direct Gain 0 0.950105444854022 0 0.845148622989655 prediction 0.900210889708045 Functional Gain - OR4X2 ENSG00000172208 CDS Human polymorphic_pseudogene chr11:48266895 chr11:48266895 nonsynonymous SNV 0.021 0 21 hm5C_associated_SNPs_131303 0 0 0 0 0 unknown 0 0.500231643921063 0.69029724597931 0.000463287842125792 hm5C_site_51361 DeepMRMD:0.69029724597931;iRNA_m5C:0.000463287842125792 51362 chr6 37139080 37139080 1 + A C COAD 37139080 + 37139060 37139100 41 ACGGAAAGGGGAGCCCTGCAAGAGGAGCTGGCCCGCAGCTT ACGGAAAGGGGAGCCCTGCACGAGGAGCTGGCCCGCAGCTT Direct Gain 0 0.95009931893079 0 0.838090777397156 prediction 0.900198637861581 Functional Gain - PIM1 ENSG00000137193 CDS Human protein_coding chr6:37139080 chr6:37139080 nonsynonymous SNV 0.892 1 21 hm5C_associated_SNPs_131304 0 0 1 0 0 Cytosol 0 0.500231643921092 0.676181554794312 0.000463287842184856 hm5C_site_51362 DeepMRMD:0.676181554794312;iRNA_m5C:0.000463287842184856 51363 chr19 38795504 38795504 1 + A G rs575882929 38795504 - 38795484 38795524 41 CCGGGATGCTCTCGTGCTGCTTGGAGCCAGCAGCGTGGGAC CCGGGATGCTCTCGTGCTGCCTGGAGCCAGCAGCGTGGGAC Direct Gain 0 0.950076018783245 0 0.557158708572388 prediction 0.90015203756649 Functional Gain - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795504 chr19:38795504 nonsynonymous SNV 0.061 1 21 hm5C_associated_SNPs_131305 0 0 0 0 0 Ribosome 0 0.500231631649774 0.114317417144776 0.0004632632995476 hm5C_site_51363 DeepMRMD:0.114317417144776;iRNA_m5C:0.0004632632995476 51364 chr1 910272 910272 1 + T C rs533931038 910272 + 910252 910292 41 GGGAGGAGACTCGCTGGGAGTGGGAGGGCAGCACGGGCGTG GGGAGGAGACTCGCTGGGAGCGGGAGGGCAGCACGGGCGTG Direct Gain 0 0.950061543845195 0 0.829609870910645 prediction 0.900123087690391 Functional Gain - PLEKHN1 ENSG00000187583 UTR3 Human protein_coding chr1:910272 chr1:910272 . . 0 21 hm5C_associated_SNPs_131306 0 0 0 0 0 chromatin 0 0.500231643861611 0.65921974182129 0.000463287723222905 hm5C_site_51364 DeepMRMD:0.65921974182129;iRNA_m5C:0.000463287723222905 51365 chr17 7286862 7286862 1 + G C HNSC 7286862 + 7286842 7286882 41 CCCAGAGGGTGCTGTTTGCAGAGGGGAGCTGCTGGGTTCAG CCCAGAGGGTGCTGTTTGCACAGGGGAGCTGCTGGGTTCAG Direct Gain 0 0.95003310452364 0 0.880060315132141 prediction 0.90006620904728 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7286862 chr17:7286862 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_131307 0 0 0 0 0 nucleus 0 0.500231643967149 0.760120630264282 0.000463287934298062 hm5C_site_51365 DeepMRMD:0.760120630264282;iRNA_m5C:0.000463287934298062 51366 chr3 153840100 153840100 1 + C G BLCA 153840100 - 153840080 153840120 41 TGACTTGGGCCGTCGAAGTCGAGGAGAGGCAGCCCTGTACT TGACTTGGGCCGTCGAAGTCCAGGAGAGGCAGCCCTGTACT Direct Gain 0 0.950027824114361 0 0.886916399002075 prediction 0.900055648228722 Functional Gain - ARHGEF26 ENSG00000114790 CDS Human protein_coding chr3:153840100 chr3:153840100 nonsynonymous SNV 0.939 0 21 hm5C_associated_SNPs_131308 0 0 0 0 0 chromatin 0 0.500231644088641 0.77383279800415 0.000463288177281251 hm5C_site_51366 DeepMRMD:0.77383279800415;iRNA_m5C:0.000463288177281251 51367 chr19 14552020 14552020 1 + C G rs369378980 14552020 - 14552000 14552040 41 TCCAGCTGCTGCTGTACCCCGGGGGCCGCCAGGTCTGCCCC TCCAGCTGCTGCTGTACCCCCGGGGCCGCCAGGTCTGCCCC Direct Gain 0 0.950019530606288 0 0.970782399177551 prediction 0.900039061212575 Functional Gain - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14552020 chr19:14552020 synonymous SNV . 0 21 hm5C_associated_SNPs_131309 0 0 0 0 0 Ribosome 0 0.500231643921092 0.941564798355102 0.000463287842184856 hm5C_site_51367 DeepMRMD:0.941564798355102;iRNA_m5C:0.000463287842184856 51368 chr5 72112430 72112430 1 + C G rs34647 72112430 - 72112410 72112450 41 GGCCGGGGGGCGGAGCCCGCGGCGGGAACATTCGGCGGCGG GGCCGGGGGGCGGAGCCCGCCGCGGGAACATTCGGCGGCGG Direct Gain 0 0.950005356949887 0 0.801549553871155 prediction 0.900010713899774 Functional Gain - TNPO1 ENSG00000083312 UTR5 Human protein_coding chr5:72112430 chr5:72112430 . . 0 21 hm5C_associated_SNPs_131310 0 0 0 0 0 Cytosol 0 0.500231643919587 0.60309910774231 0.000463287839173709 hm5C_site_51368 DeepMRMD:0.60309910774231;iRNA_m5C:0.000463287839173709 51369 chr1 201965318 201965318 1 + G C OV 201965318 + 201965298 201965338 41 GCCTGATTGATGCTGCCAAGGAGGAGTACAACGGGGTGATA GCCTGATTGATGCTGCCAAGCAGGAGTACAACGGGGTGATA Direct Gain 0 0.949984551463685 0 0.84266322851181 prediction 0.899969102927369 Functional Gain - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201965318 chr1:201965318 nonsynonymous SNV 0.516 0 21 hm5C_associated_SNPs_131311 0 0 1 0 2 Ribosome 0 0.500231661588874 0.68532645702362 0.000463323177747998 hm5C_site_51369 DeepMRMD:0.68532645702362;iRNA_m5C:0.000463323177747998 51370 chr14 93276689 93276689 1 + G C SKCM 93276689 + 93276669 93276709 41 CATGAAGCGGATGCCACTCTGAAGAGAGAGCAGGAGAGCTA CATGAAGCGGATGCCACTCTCAAGAGAGAGCAGGAGAGCTA Direct Gain 0 0.949980287581833 0 0.908628940582275 prediction 0.899960575163666 Functional Gain - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93276689 chr14:93276689 synonymous SNV . 0 21 hm5C_associated_SNPs_131312 0 0 1 0 2 chromatin 0 0.500231643682198 0.81725788116455 0.000463287364395271 hm5C_site_51370 DeepMRMD:0.81725788116455;iRNA_m5C:0.000463287364395271 51371 chr19 549080 549080 1 + A G rs59771750 549080 - 549060 549100 41 CACATGCGGGTGTCCAGCACTTGGAGGTCCAGCTCCCGCAG CACATGCGGGTGTCCAGCACCTGGAGGTCCAGCTCCCGCAG Direct Gain 0 0.949955661870006 0 0.834656119346619 prediction 0.899911323740012 Functional Gain - GZMM ENSG00000197540 CDS Human protein_coding chr19:549080 chr19:549080 synonymous SNV . 0 21 hm5C_associated_SNPs_131313 0 0 0 0 0 exosome 0 0.500231186752961 0.669312238693238 0.000462373505921043 hm5C_site_51371 DeepMRMD:0.669312238693238;iRNA_m5C:0.000462373505921043 51372 chr1 159175718 159175718 1 + A G UCEC 159175718 - 159175698 159175738 41 GTGAGCCCCAGGGTGAGGCCTGGGACCTGGCCTGCACCCAG GTGAGCCCCAGGGTGAGGCCCGGGACCTGGCCTGCACCCAG Direct Gain 0 0.949953825129248 0 0.917697131633759 prediction 0.899907650258496 Functional Gain - ACKR1 ENSG00000213088 CDS Human protein_coding chr1:159175718 chr1:159175718 synonymous SNV . 0 21 hm5C_associated_SNPs_131314 0 0 0 0 0 Endoplasmic reticulum 0 0.500231637486088 0.835394263267518 0.000463274972175132 hm5C_site_51372 DeepMRMD:0.835394263267518;iRNA_m5C:0.000463274972175132 51373 chr19 42795085 42795085 1 + C G ACC 42795085 - 42795065 42795105 41 ACACTAAGCTGACACCCAGCGGGGAGCCCCCAGGCACCCGA ACACTAAGCTGACACCCAGCCGGGAGCCCCCAGGCACCCGA Direct Gain 0 0.949950769193947 0 0.892955541610718 prediction 0.899901538387894 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42795085 chr19:42795085 nonsynonymous SNV 0.986 2 21 hm5C_associated_SNPs_131315 0 0 0 0 0 Cytosol 0 0.500231675192991 0.785911083221436 0.00046335038598122 hm5C_site_51373 DeepMRMD:0.785911083221436;iRNA_m5C:0.00046335038598122 51374 chr10 71392692 71392692 1 + T C rs1052152 71392692 + 71392672 71392712 41 GGCTTTCCGCAGTGGCATCTTGGCAACCATGCTGTGGAGCC GGCTTTCCGCAGTGGCATCTCGGCAACCATGCTGTGGAGCC Direct Gain 0 0.94994698916895 0 0.832156658172607 prediction 0.899893978337899 Functional Gain - C10orf35 ENSG00000171224 CDS Human protein_coding chr10:71392692 chr10:71392692 synonymous SNV . 0 21 hm5C_associated_SNPs_131316 0 1 1 0 0 exosome 0 0.500231643921091 0.664313316345214 0.000463287842181304 hm5C_site_51374 DeepMRMD:0.664313316345214;iRNA_m5C:0.000463287842181304 51375 chr17 48557348 48557348 1 + T C rs2290861 48557348 + 48557328 48557368 41 AGCCCACCTGCCTGCAGACTTGGAAGTCACATTGGAGGCTA AGCCCACCTGCCTGCAGACTCGGAAGTCACATTGGAGGCTA Direct Gain 0 0.949941199856455 0 0.48283189535141 prediction 0.899882399712909 Functional Gain - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48557348 chr17:48557348 nonsynonymous SNV 0.983 0 21 hm5C_associated_SNPs_131317 0 0 1 0 1 Ribosome 0 0.500231643812032 0 0.00046328762406489 hm5C_site_51375 DeepMRMD:0;iRNA_m5C:0.00046328762406489 51376 chr19 55897974 55897974 1 + T G COAD 55897974 - 55897954 55897994 41 GCGGTGAATCAGTCCGTTGTAGCGGAAGGAATTGCGGGCCT GCGGTGAATCAGTCCGTTGTCGCGGAAGGAATTGCGGGCCT Direct Gain 0 0.949938759044076 0 0.953128933906555 prediction 0.899877518088151 Functional Gain - RPL28 ENSG00000108107 CDS Human protein_coding chr19:55897974 chr19:55897974 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131318 0 0 0 0 0 Cytosol 0 0.500231643921092 0.90625786781311 0.000463287842184856 hm5C_site_51376 DeepMRMD:0.90625786781311;iRNA_m5C:0.000463287842184856 51377 chr12 126137164 126137164 1 + C G BLCA 126137164 - 126137144 126137184 41 GCTCACCTGCTGTGGGGACTGAAGAACATCCAGGGCAGCAG GCTCACCTGCTGTGGGGACTCAAGAACATCCAGGGCAGCAG Direct Gain 0 0.949935360108452 0 0.945136070251465 prediction 0.899870720216903 Functional Gain - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126137164 chr12:126137164 nonsynonymous SNV 0.034 0 21 hm5C_associated_SNPs_131319 0 0 0 0 0 exosome 0 0.499797580569333 0.89027214050293 0 hm5C_site_51377 DeepMRMD:0.89027214050293;iRNA_m5C:0 51378 chr1 204091488 204091488 1 + A G UCEC 204091488 - 204091468 204091508 41 GCTGGACTGCAGGTCCCGCGTGGGGCCTCCATGGCTGGGGG GCTGGACTGCAGGTCCCGCGCGGGGCCTCCATGGCTGGGGG Direct Gain 0 0.949931073393853 0 0.879308223724365 prediction 0.899862146787706 Functional Gain - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204091488 chr1:204091488 nonsynonymous SNV 0.523 1 21 hm5C_associated_SNPs_131320 0 0 0 0 0 nucleus 0 0.500231643921094 0.75861644744873 0.000463287842188187 hm5C_site_51378 DeepMRMD:0.75861644744873;iRNA_m5C:0.000463287842188187 51379 chr16 816939 816939 1 + C G BLCA 816939 - 816919 816959 41 GCAAGGCGGGCCTTGGGATAGAGGACGTCCAGCTGCCTTGG GCAAGGCGGGCCTTGGGATACAGGACGTCCAGCTGCCTTGG Direct Gain 0 0.949917679382029 0 0.583325803279877 prediction 0.899835358764058 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:816939 chr16:816939 synonymous SNV . 0 21 hm5C_associated_SNPs_131321 0 0 0 0 0 nucleus 0 0.500231643921123 0.166651606559754 0.000463287842245697 hm5C_site_51379 DeepMRMD:0.166651606559754;iRNA_m5C:0.000463287842245697 51380 chr1 235506844 235506844 1 + T C rs60459599 235506844 + 235506824 235506864 41 CCTCTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCT CCTCTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCT Direct Gain 0 0.949906823857057 0 0.286495536565781 prediction 0.899813647714114 Functional Gain - GGPS1 ENSG00000152904 UTR3 Human protein_coding chr1:235506844 chr1:235506844 . . 0 21 hm5C_associated_SNPs_131322 0 0 0 0 0 Ribosome 0 0.500231643715798 0 0.000463287431595738 hm5C_site_51380 DeepMRMD:0;iRNA_m5C:0.000463287431595738 51381 chr17 27182065 27182065 1 + A G rs568461353 27182065 - 27182045 27182085 41 AAGCCTAGCCCCGCGCCAGCTGGGGGCAGCCATTACAGCCG AAGCCTAGCCCCGCGCCAGCCGGGGGCAGCCATTACAGCCG Direct Gain 0 0.949853570583705 0 0.970853865146637 prediction 0.899707141167409 Functional Gain - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27182065 chr17:27182065 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_131323 0 0 0 0 0 Ribosome 0 0.500231643921093 0.941707730293274 0.000463287842185744 hm5C_site_51381 DeepMRMD:0.941707730293274;iRNA_m5C:0.000463287842185744 51382 chr6 34212861 34212861 1 + T C UCEC 34212861 + 34212841 34212881 41 CAGGGCTCCCATGGGCTGAGTGGGGAGCAGTTTTCCCCTGG CAGGGCTCCCATGGGCTGAGCGGGGAGCAGTTTTCCCCTGG Direct Gain 0 0.949852562366221 0 0.865368604660034 prediction 0.899705124732442 Functional Gain - HMGA1 ENSG00000137309 CDS Human protein_coding chr6:34212861 chr6:34212861 synonymous SNV . 0 21 hm5C_associated_SNPs_131324 0 0 1 0 0 Cytosol 0 0.500231643921735 0.730737209320068 0.000463287843469162 hm5C_site_51382 DeepMRMD:0.730737209320068;iRNA_m5C:0.000463287843469162 51383 chr1 16065838 16065838 1 + C G LUAD 16065838 - 16065818 16065858 41 TCGTCCCAGAAGAGCATGCTGAGGATGGTGTGGGGGCCCAG TCGTCCCAGAAGAGCATGCTCAGGATGGTGTGGGGGCCCAG Direct Gain 0 0.949844844568527 0 0.883810043334961 prediction 0.899689689137054 Functional Gain - SLC25A34 ENSG00000162461 CDS Human protein_coding chr1:16065838 chr1:16065838 synonymous SNV . 0 21 hm5C_associated_SNPs_131325 0 0 0 0 0 exosome 0 0.500231643917767 0.767620086669922 0.000463287835534176 hm5C_site_51383 DeepMRMD:0.767620086669922;iRNA_m5C:0.000463287835534176 51384 chr19 17417186 17417186 1 + T C UCEC 17417186 + 17417166 17417206 41 GCCGCAAGTCGCTGAGCCATTGAGGATCGCGACGCAGTCGG GCCGCAAGTCGCTGAGCCATCGAGGATCGCGACGCAGTCGG Direct Gain 0 0.949835580032464 0 0.985602200031281 prediction 0.899671160064927 Functional Gain - MRPL34 ENSG00000130312 CDS Human protein_coding chr19:17417186 chr19:17417186 stoploss 0.908 0 21 hm5C_associated_SNPs_131326 0 0 1 0 0 Ribosome 0 0.500231644018854 0.971204400062562 0.000463288037708676 hm5C_site_51384 DeepMRMD:0.971204400062562;iRNA_m5C:0.000463288037708676 51385 chr20 61867638 61867638 1 + G C BRCA 61867638 + 61867618 61867658 41 GCCAGCTGCGGCCCCTGACAGAGGAGGAAGAGGAGGAGGGC GCCAGCTGCGGCCCCTGACACAGGAGGAAGAGGAGGAGGGC Direct Gain 0 0.949826639992399 0 0.885450184345245 prediction 0.899653279984798 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61867638 chr20:61867638 nonsynonymous SNV 0.017 0 21 hm5C_associated_SNPs_131327 0 0 0 0 0 exosome 0 0.500231643921092 0.77090036869049 0.000463287842184856 hm5C_site_51385 DeepMRMD:0.77090036869049;iRNA_m5C:0.000463287842184856 51386 chr4 155665759 155665759 1 + A G UCEC 155665759 - 155665739 155665779 41 CGCCCAGGATGAGACGCTTGTTGGAGACCACCTTCTGCGTG CGCCCAGGATGAGACGCTTGCTGGAGACCACCTTCTGCGTG Direct Gain 0 0.949825529162825 0 0.674292862415314 prediction 0.89965105832565 Functional Gain - LRAT ENSG00000121207 CDS Human protein_coding chr4:155665759 chr4:155665759 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131328 0 0 0 0 0 Nucleus 0 0.500232013500343 0.348585724830628 0.000464027000685929 hm5C_site_51386 DeepMRMD:0.348585724830628;iRNA_m5C:0.000464027000685929 51387 chr11 1271174 1271174 1 + C G LUSC 1271174 - 1271154 1271194 41 TGTGGGTGGTCTCCGGAGTGGAGGAGGGGTGGATTGTGGAC TGTGGGTGGTCTCCGGAGTGCAGGAGGGGTGGATTGTGGAC Direct Gain 0 0.949759247146599 0 0.764098405838013 prediction 0.899518494293199 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1271174 chr11:1271174 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_131329 0 0 0 0 0 Endoplasmic reticulum 0 0.500231645041741 0.528196811676026 0.000463290083482226 hm5C_site_51387 DeepMRMD:0.528196811676026;iRNA_m5C:0.000463290083482226 51388 chr3 137484271 137484271 1 + C G UVM 137484271 - 137484251 137484291 41 GGGAAGAGGATGTAGGCGACGGGGGGCTGCAGGGTGGAGGC GGGAAGAGGATGTAGGCGACCGGGGGCTGCAGGGTGGAGGC Direct Gain 0 0.949723382756594 0 0.858502686023712 prediction 0.899446765513188 Functional Gain - SOX14 ENSG00000168875 CDS Human protein_coding chr3:137484271 chr3:137484271 synonymous SNV . 0 21 hm5C_associated_SNPs_131330 0 0 0 0 0 exosome 0 0.500231643921093 0.717005372047424 0.000463287842185078 hm5C_site_51388 DeepMRMD:0.717005372047424;iRNA_m5C:0.000463287842185078 51389 chr10 76790247 76790247 1 + A G LIHC 76790247 - 76790227 76790267 41 AAGAGGCGGCGGCAGATTCATTGGAGGAGGAGTCAGGTTGG AAGAGGCGGCGGCAGATTCACTGGAGGAGGAGTCAGGTTGG Direct Gain 0 0.949703411624237 0 0.785407781600952 prediction 0.899406823248475 Functional Gain - KAT6B ENSG00000156650 CDS Human protein_coding chr10:76790247 chr10:76790247 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_131331 0 0 0 0 0 Nucleus 0 0.500231643921092 0.570815563201904 0.000463287842184856 hm5C_site_51389 DeepMRMD:0.570815563201904;iRNA_m5C:0.000463287842184856 51390 chr8 133909927 133909927 1 + C G rs115936153 133909927 - 133909907 133909947 41 ATGCTCCAGCCGAGTCGTCCGGGGAAAAGCGGCGTCTCTGA ATGCTCCAGCCGAGTCGTCCCGGGAAAAGCGGCGTCTCTGA Direct Gain 0 0.949674402202511 0 0.947803914546967 prediction 0.899348804405022 Functional Gain - TG ENSG00000042832 CDS Human protein_coding chr8:133909927 chr8:133909927 nonsynonymous SNV 0.015 1 21 hm5C_associated_SNPs_131332 0 0 0 0 0 Nucleus 0 0.500231643992283 0.895607829093934 0.000463287984566962 hm5C_site_51390 DeepMRMD:0.895607829093934;iRNA_m5C:0.000463287984566962 51391 chr2 110373228 110373228 1 + G C HNSC 110373228 + 110373208 110373248 41 ACCTGAGTCGGAGCATCGCCGAGGAGATCAAGAACCTGGTG ACCTGAGTCGGAGCATCGCCCAGGAGATCAAGAACCTGGTG Direct Gain 0 0.94967228077913 0 0.922668218612671 prediction 0.899344561558261 Functional Gain - SOWAHC ENSG00000198142 CDS Human protein_coding chr2:110373228 chr2:110373228 nonsynonymous SNV 0.843 1 21 hm5C_associated_SNPs_131333 0 0 1 0 0 Ribosome 0 0.5002316402856 0.845336437225342 0.000463280571200375 hm5C_site_51391 DeepMRMD:0.845336437225342;iRNA_m5C:0.000463280571200375 51392 chr20 62494210 62494210 1 + A G rs553699914 62494210 - 62494190 62494230 41 TGCTTCCGAGCCAGGAACAGTGCGAGGCGCCGGCGCCGCCG TGCTTCCGAGCCAGGAACAGCGCGAGGCGCCGGCGCCGCCG Direct Gain 0 0.949670064221265 0 0.849091529846191 prediction 0.89934012844253 Functional Gain - ABHD16B ENSG00000183260 CDS Human protein_coding chr20:62494210 chr20:62494210 synonymous SNV . 0 21 hm5C_associated_SNPs_131334 0 0 1 0 0 exosome 0 0.500231644339917 0.698183059692382 0.000463288679833251 hm5C_site_51392 DeepMRMD:0.698183059692382;iRNA_m5C:0.000463288679833251 51393 chr11 3243910 3243910 1 + G C rs55959344 3243910 + 3243890 3243930 41 ACGTGGAGGGAGCCTCCGTGGGGGGAGCAACTGCTCCCGGT ACGTGGAGGGAGCCTCCGTGCGGGGAGCAACTGCTCCCGGT Direct Gain 0 0.949655576205255 0 0.961563944816589 prediction 0.899311152410509 Functional Gain - MRGPRG-AS1 ENSG00000236301 ncRNA_exonic Human antisense chr11:3243910 chr11:3243910 . . 0 21 hm5C_associated_SNPs_131335 0 0 0 0 0 unknown 0 0.500231645862535 0.923127889633178 0.000463291725070647 hm5C_site_51393 DeepMRMD:0.923127889633178;iRNA_m5C:0.000463291725070647 51394 chr8 19253041 19253041 1 + T C rs144784881 19253041 + 19253021 19253061 41 ATAGTCAAGATGAGGTCACATTGGATTAGGGTGGGCCCCAA ATAGTCAAGATGAGGTCACACTGGATTAGGGTGGGCCCCAA Direct Gain 0 0.949639156028538 0 0.95947265625 prediction 0.899278312057076 Functional Gain - SH2D4A ENSG00000104611 UTR3 Human protein_coding chr8:19253041 chr8:19253041 . . 0 21 hm5C_associated_SNPs_131336 0 0 1 0 0 Nucleus 0 0.500231777741385 0.9189453125 0.00046355548276944 hm5C_site_51394 DeepMRMD:0.9189453125;iRNA_m5C:0.00046355548276944 51395 chr9 140500121 140500121 1 + G C rs553621923 140500121 + 140500101 140500141 41 GCCTCGGAGCCGGGACTCGCGGGCGGCGGGCGGGGGCGTCG GCCTCGGAGCCGGGACTCGCCGGCGGCGGGCGGGGGCGTCG Direct Gain 0 0.949598103899073 0 0.751086592674255 prediction 0.899196207798146 Functional Gain - ARRDC1 ENSG00000197070 UTR5 Human protein_coding chr9:140500121 chr9:140500121 . . 0 21 hm5C_associated_SNPs_131337 0 0 0 0 0 Ribosome 0 0.501084938254639 0.50217318534851 0.00216987650927769 hm5C_site_51395 DeepMRMD:0.50217318534851;iRNA_m5C:0.00216987650927769 51396 chr9 139848921 139848921 1 + C G rs550631266 139848921 - 139848901 139848941 41 GGACAGGAGACCCGGGGTGGGAGGAGGTGGCCCAGGACAGG GGACAGGAGACCCGGGGTGGCAGGAGGTGGCCCAGGACAGG Direct Gain 0 0.949586710270809 0 0.859637856483459 prediction 0.899173420541619 Functional Gain - LCN12 ENSG00000184925 intronic Human protein_coding chr9:139848921 chr9:139848921 . . 0 21 hm5C_associated_SNPs_131338 0 0 0 0 0 exosome 0 0.500231643935109 0.719275712966918 0.000463287870217099 hm5C_site_51396 DeepMRMD:0.719275712966918;iRNA_m5C:0.000463287870217099 51397 chr7 37907439 37907439 1 + G C LUAD 37907439 + 37907419 37907459 41 CCGAACCTAACGAACGATCTGAGGATCAACCTGAGGTCGAA CCGAACCTAACGAACGATCTCAGGATCAACCTGAGGTCGAA Direct Gain 0 0.949579833901467 0 0.833070635795593 prediction 0.899159667802933 Functional Gain - NME8 ENSG00000086288 CDS Human protein_coding chr7:37907439 chr7:37907439 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_131339 0 0 0 0 1 exosome 0 0.500231643965634 0.666141271591186 0.000463287931267597 hm5C_site_51397 DeepMRMD:0.666141271591186;iRNA_m5C:0.000463287931267597 51398 chr4 187003567 187003567 1 + T C rs75290011 187003567 + 187003547 187003587 41 GCCTTACAGAGAAGCTATGTTTGGAATTAGCAAACACAAGC GCCTTACAGAGAAGCTATGTCTGGAATTAGCAAACACAAGC Direct Gain 0 0.949571210378295 0 0.747767090797424 prediction 0.89914242075659 Functional Gain - TLR3 ENSG00000164342 CDS Human protein_coding chr4:187003567 chr4:187003567 synonymous SNV . 0 21 hm5C_associated_SNPs_131340 0 0 0 0 1 exosome 0 0.500231671399901 0.495534181594848 0.000463342799802646 hm5C_site_51398 DeepMRMD:0.495534181594848;iRNA_m5C:0.000463342799802646 51399 chr10 26998620 26998620 1 + T C STAD 26998620 + 26998600 26998640 41 ATGTCTGAGTACTACTTTGATGGGAAAGGGAAAGCCTTTCG ATGTCTGAGTACTACTTTGACGGGAAAGGGAAAGCCTTTCG Direct Gain 0 0.949570799526145 0 0.792957544326782 prediction 0.899141599052291 Functional Gain - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26998620 chr10:26998620 synonymous SNV . 0 21 hm5C_associated_SNPs_131341 0 0 1 0 2 Ribosome 0 0.500231644098643 0.585915088653564 0.000463288197285694 hm5C_site_51399 DeepMRMD:0.585915088653564;iRNA_m5C:0.000463288197285694 51400 chr8 97274282 97274282 1 + T C COAD 97274282 + 97274262 97274302 41 GCGGGCCATGGCGTCCTGCGTGGGGAGCCGGACCCTAAGCA GCGGGCCATGGCGTCCTGCGCGGGGAGCCGGACCCTAAGCA Direct Gain 0 0.949559719842046 0 0.942729592323303 prediction 0.899119439684092 Functional Gain - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97274282 chr8:97274282 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_131342 0 0 1 0 0 Ribosome 0 0.500231643778651 0.885459184646606 0.000463287557302738 hm5C_site_51400 DeepMRMD:0.885459184646606;iRNA_m5C:0.000463287557302738 51401 chr5 148747642 148747642 1 + C G rs140144750 148747642 - 148747622 148747662 41 GCTGCTGTTGTCCAGGTGCAGGGGGGTGGCGATGACCACGA GCTGCTGTTGTCCAGGTGCACGGGGGTGGCGATGACCACGA Direct Gain 0 0.949558819271762 0 0.957935392856598 prediction 0.899117638543524 Functional Gain - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148747642 chr5:148747642 nonsynonymous SNV 0.775 4 21 hm5C_associated_SNPs_131343 0 0 0 0 0 Ribosome 0 0.500231644062818 0.915870785713196 0.000463288125635453 hm5C_site_51401 DeepMRMD:0.915870785713196;iRNA_m5C:0.000463288125635453 51402 chr15 85401168 85401168 1 + A G UCEC 85401168 - 85401148 85401188 41 GGCAGGGACAGTGAGGGAGCTGGGACCAGGACCCCAGGAGC GGCAGGGACAGTGAGGGAGCCGGGACCAGGACCCCAGGAGC Direct Gain 0 0.949548562371365 0 0.915561020374298 prediction 0.899097124742729 Functional Gain - ALPK3 ENSG00000136383 CDS Human protein_coding chr15:85401168 chr15:85401168 nonsynonymous SNV 0.012 1 21 hm5C_associated_SNPs_131344 0 0 0 0 0 exosome 0 0.500231679255937 0.831122040748596 0.000463358511874956 hm5C_site_51402 DeepMRMD:0.831122040748596;iRNA_m5C:0.000463358511874956 51403 chr16 603471 603471 1 + A G rs11248937 603471 - 603451 603491 41 CCGGCGACCTCTGGCGTGAGTGGGGGGCTGTGGGTCCCCTT CCGGCGACCTCTGGCGTGAGCGGGGGGCTGTGGGTCCCCTT Direct Gain 0 0.949547313212766 0 0.975798368453979 prediction 0.899094626425533 Functional Gain - CAPN15 ENSG00000103326 CDS Human protein_coding chr16:603471 chr16:603471 synonymous SNV . 0 21 hm5C_associated_SNPs_131345 0 0 0 0 0 chromatin 0 0.500231643921094 0.951596736907958 0.000463287842187965 hm5C_site_51403 DeepMRMD:0.951596736907958;iRNA_m5C:0.000463287842187965 51404 chr3 127771241 127771241 1 + C G rs571322395 127771241 - 127771221 127771261 41 AGCGGCGCGGCGCGGCGCGGGGCGGGGCCGGGGCCGGGCCT AGCGGCGCGGCGCGGCGCGGCGCGGGGCCGGGGCCGGGCCT Direct Gain 0 0.949543297664192 0 0.820777177810669 prediction 0.899086595328384 Functional Gain - SEC61A1 ENSG00000058262 UTR5 Human protein_coding chr3:127771241 chr3:127771241 . . 0 21 hm5C_associated_SNPs_131346 0 0 0 0 0 Ribosome 0 0.500231643921096 0.641554355621338 0.000463287842192406 hm5C_site_51404 DeepMRMD:0.641554355621338;iRNA_m5C:0.000463287842192406 51405 chr20 42694513 42694513 1 + C G LUAD 42694513 - 42694493 42694533 41 GACTTGGAGCCCAGCGTCCGGGCGAGGCTGGCAGGGGAGGC GACTTGGAGCCCAGCGTCCGCGCGAGGCTGGCAGGGGAGGC Direct Gain 0 0.94952199136683 0 0.748525857925415 prediction 0.89904398273366 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42694513 chr20:42694513 synonymous SNV . 0 21 hm5C_associated_SNPs_131347 0 0 0 0 0 exosome 0 0.500231643938845 0.49705171585083 0.000463287877690677 hm5C_site_51405 DeepMRMD:0.49705171585083;iRNA_m5C:0.000463287877690677 51406 chr9 140328756 140328756 1 + C G rs112103208 140328756 - 140328736 140328776 41 GCCGGGGGCTCCTGACATCCGAGGGCCGGCGGGGACCACGA GCCGGGGGCTCCTGACATCCCAGGGCCGGCGGGGACCACGA Direct Gain 0 0.949521886268284 0 0.867368698120117 prediction 0.899043772536569 Functional Gain - NOXA1 ENSG00000188747 CDS Human protein_coding chr9:140328756 chr9:140328756 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131348 0 0 0 0 0 nucleus 0 0.500231651916626 0.734737396240234 0.000463303833252882 hm5C_site_51406 DeepMRMD:0.734737396240234;iRNA_m5C:0.000463303833252882 51407 chr2 130738114 130738114 1 + G C BLCA 130738114 + 130738094 130738134 41 GTGTCAGTTGAGGAGGGAGAGAGGAAAGCCAAAGGGCTGAA GTGTCAGTTGAGGAGGGAGACAGGAAAGCCAAAGGGCTGAA Direct Gain 0 0.949520855629495 0 0.804271221160889 prediction 0.899041711258991 Functional Gain - RAB6C ENSG00000222014 CDS Human protein_coding chr2:130738114 chr2:130738114 nonsynonymous SNV 0.098 0 21 hm5C_associated_SNPs_131349 0 0 0 0 0 exosome 0 0.50023558021387 0.608542442321778 0.000471160427739425 hm5C_site_51407 DeepMRMD:0.608542442321778;iRNA_m5C:0.000471160427739425 51408 chr10 52751282 52751282 1 + A G UCEC 52751282 - 52751262 52751302 41 CCGATGTGGGTCGAGGGCACTGGGAGCACCGACTGGCATTT CCGATGTGGGTCGAGGGCACCGGGAGCACCGACTGGCATTT Direct Gain 0 0.949513165987171 0 0.830885887145996 prediction 0.899026331974341 Functional Gain - PRKG1 ENSG00000185532 CDS Human protein_coding chr10:52751282 chr10:52751282 synonymous SNV . 0 21 hm5C_associated_SNPs_131350 0 0 0 0 0 membrane 0 0.500231642078777 0.661771774291992 0.00046328415755359 hm5C_site_51408 DeepMRMD:0.661771774291992;iRNA_m5C:0.00046328415755359 51409 chr1 75602802 75602802 1 + G C LUAD 75602802 + 75602782 75602822 41 CAGGTGAGCCCCGAGGGAGCGGGGGACGAGGACTCGTGCTC CAGGTGAGCCCCGAGGGAGCCGGGGACGAGGACTCGTGCTC Direct Gain 0 0.949510089313592 0 0.963212490081787 prediction 0.899020178627185 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602802 chr1:75602802 synonymous SNV . 0 21 hm5C_associated_SNPs_131351 0 0 0 0 2 exosome 0 0.50023164933787 0.926424980163574 0.000463298675739576 hm5C_site_51409 DeepMRMD:0.926424980163574;iRNA_m5C:0.000463298675739576 51410 chr7 64498755 64498755 1 + G C rs182969532 64498755 + 64498735 64498775 41 GGCGGCGGCGGCAGGATGGCGACGGCCGTCCTGCTGAGCGT GGCGGCGGCGGCAGGATGGCCACGGCCGTCCTGCTGAGCGT Direct Gain 0 0.949492699606865 0 0.54209578037262 prediction 0.89898539921373 Functional Gain - CCT6P3 ENSG00000234585;ENSG00000239985 ncRNA_exonic Human other chr7:64498755 chr7:64498755 . . 0 21 hm5C_associated_SNPs_131352 0 0 1 0 0 unknown 0 0.500231653837007 0.0841915607452399 0.00046330767401348 hm5C_site_51410 DeepMRMD:0.0841915607452399;iRNA_m5C:0.00046330767401348 51411 chr12 7045360 7045360 1 + C G LUAD 7045360 - 7045340 7045380 41 GGAGAGGCTGATGCATTGTTGAGGGGTCTCAGGGCAGGTGG GGAGAGGCTGATGCATTGTTCAGGGGTCTCAGGGCAGGTGG Direct Gain 0 0.94948509456764 0 0.907162725925446 prediction 0.898970189135281 Functional Gain - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7045360 chr12:7045360 synonymous SNV . 0 21 hm5C_associated_SNPs_131353 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.814325451850892 0.000463287842184856 hm5C_site_51411 DeepMRMD:0.814325451850892;iRNA_m5C:0.000463287842184856 51412 chr12 247771 247771 1 + C G LUAD 247771 - 247751 247791 41 CTCCACGTGCTGAGCGCGTCGTCGATGGACTTGGCCAGGGA CTCCACGTGCTGAGCGCGTCCTCGATGGACTTGGCCAGGGA Direct Gain 0 0.949464991445454 0 0.913685321807861 prediction 0.898929982890909 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:247771 chr12:247771 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_131354 0 0 0 0 2 nucleolus 0 0.50023164397185 0.827370643615722 0.000463287943700319 hm5C_site_51412 DeepMRMD:0.827370643615722;iRNA_m5C:0.000463287943700319 51413 chr16 89160284 89160284 1 + C G rs529306939 89160284 - 89160264 89160304 41 TCCCGCGGGGTCGTGAGTCGGGCCGGACCAGTTCCGGCGCC TCCCGCGGGGTCGTGAGTCGCGCCGGACCAGTTCCGGCGCC Direct Gain 0 0.949459520194083 0 0.787084460258484 prediction 0.898919040388167 Functional Gain - ACSF3 ENSG00000176715 UTR5 Human protein_coding chr16:89160284 chr16:89160284 . . 0 21 hm5C_associated_SNPs_131355 0 0 0 0 0 chromatin 0 0.500231698690787 0.574168920516968 0.000463397381573971 hm5C_site_51413 DeepMRMD:0.574168920516968;iRNA_m5C:0.000463397381573971 51414 chr15 74336971 74336971 1 + C G LUSC 74336971 - 74336951 74336991 41 TGGGGGCCCGGGGAGACCTCGAGGAGGCGGCACAGGTCACG TGGGGGCCCGGGGAGACCTCCAGGAGGCGGCACAGGTCACG Direct Gain 0 0.949446388150697 0 0.901582956314087 prediction 0.898892776301395 Functional Gain - PML ENSG00000140464 CDS Human protein_coding chr15:74336971 chr15:74336971 synonymous SNV . 0 21 hm5C_associated_SNPs_131356 0 0 0 0 0 Cytosol 0 0.500231644112618 0.803165912628174 0.000463288225235781 hm5C_site_51414 DeepMRMD:0.803165912628174;iRNA_m5C:0.000463288225235781 51415 chr1 34677961 34677961 1 + C G KIRC 34677961 - 34677941 34677981 41 CGGTCCATCTCCTGCCATTAGGGGAGGGTCTCGGGGGTTGG CGGTCCATCTCCTGCCATTACGGGAGGGTCTCGGGGGTTGG Direct Gain 0 0.949446240900591 0 0.808076620101929 prediction 0.898892481801181 Functional Gain - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34677961 chr1:34677961 nonsynonymous SNV 0.344 2 21 hm5C_associated_SNPs_131357 0 0 0 0 0 unknown 0 0.500231643921092 0.616153240203858 0.000463287842184856 hm5C_site_51415 DeepMRMD:0.616153240203858;iRNA_m5C:0.000463287842184856 51416 chr1 156618514 156618514 1 + T C UCEC 156618514 + 156618494 156618534 41 AGCCCAGGGTGGCTAGCTGATGGCAGTGTGCGCTACCCCAT AGCCCAGGGTGGCTAGCTGACGGCAGTGTGCGCTACCCCAT Direct Gain 0 0.949433714914158 0 0.792398452758789 prediction 0.898867429828315 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156618514 chr1:156618514 synonymous SNV . 0 21 hm5C_associated_SNPs_131358 0 0 0 0 0 chromatin 0 0.500231643921092 0.584796905517578 0.000463287842184856 hm5C_site_51416 DeepMRMD:0.584796905517578;iRNA_m5C:0.000463287842184856 51417 chr6 155054821 155054821 1 + C G rs555139158 155054821 - 155054801 155054841 41 ACCGGCATGGCCGCTAGGGCGGGGGGAGCGCCGTTCTAGGG ACCGGCATGGCCGCTAGGGCCGGGGGAGCGCCGTTCTAGGG Direct Gain 0 0.94940948124048 0 0.814739584922791 prediction 0.89881896248096 Functional Gain - SCAF8 ENSG00000213079 UTR5 Human protein_coding chr6:155054821 chr6:155054821 . . 0 21 hm5C_associated_SNPs_131359 0 0 0 0 0 Nucleus 0 0.500231644129148 0.629479169845582 0.000463288258295336 hm5C_site_51417 DeepMRMD:0.629479169845582;iRNA_m5C:0.000463288258295336 51418 chr17 79663956 79663956 1 + A G UCEC 79663956 - 79663936 79663976 41 GCTCATGTACACGCCGTGCATTGGGGAGCCCTCCACCGAGC GCTCATGTACACGCCGTGCACTGGGGAGCCCTCCACCGAGC Direct Gain 0 0.949405041657418 0 0.741426646709442 prediction 0.898810083314836 Functional Gain - HGS ENSG00000185359 CDS Human protein_coding chr17:79663956 chr17:79663956 nonsynonymous SNV 0.883 0 21 hm5C_associated_SNPs_131360 0 0 0 0 0 Nucleus 0 0.500231644113924 0.482853293418884 0.000463288227847247 hm5C_site_51418 DeepMRMD:0.482853293418884;iRNA_m5C:0.000463288227847247 51419 chr1 45226090 45226090 1 + T C STAD 45226090 + 45226070 45226110 41 AATGAGCGAGGCGCGGACACTTCCAGTGCTGACCGGCAGAC AATGAGCGAGGCGCGGACACCTCCAGTGCTGACCGGCAGAC Direct Gain 0 0.949342903729639 0 0.799722969532013 prediction 0.898685807459279 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45226090 chr1:45226090 synonymous SNV . 0 21 hm5C_associated_SNPs_131361 0 0 1 0 1 Nucleus 0 0.500248051322378 0.599445939064026 0.000496102644755636 hm5C_site_51419 DeepMRMD:0.599445939064026;iRNA_m5C:0.000496102644755636 51420 chr1 209936849 209936849 1 + A C UCEC 209936849 + 209936829 209936869 41 ACCCCCAGGAGGCCCTACAAAGGGAGCTGGTCCTAAAACAG ACCCCCAGGAGGCCCTACAACGGGAGCTGGTCCTAAAACAG Direct Gain 0 0.949340818415687 0 0.892134189605713 prediction 0.898681636831374 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209936849 chr1:209936849 synonymous SNV . 0 21 hm5C_associated_SNPs_131362 0 0 0 0 2 exosome 0 0.500231643921092 0.784268379211426 0.000463287842184634 hm5C_site_51420 DeepMRMD:0.784268379211426;iRNA_m5C:0.000463287842184634 51421 chr19 811216 811216 1 + A C rs71335272 811216 + 811196 811236 41 CGGGGTGTCCTGGGGACCCAAGGGGTGGGGGGGTCACACCA CGGGGTGTCCTGGGGACCCACGGGGTGGGGGGGTCACACCA Direct Gain 0 0.949320582337855 0 0.953362584114075 prediction 0.89864116467571 Functional Gain - PTBP1 ENSG00000011304 UTR3 Human protein_coding chr19:811216 chr19:811216 . . 0 21 hm5C_associated_SNPs_131363 0 0 1 0 0 Cytosol 0 0.500231868584912 0.90672516822815 0.00046373716982484 hm5C_site_51421 DeepMRMD:0.90672516822815;iRNA_m5C:0.00046373716982484 51422 chr11 111909992 111909992 1 + C G LUAD 111909992 - 111909972 111910012 41 AGGTGTAGGAGCTAAAGGCTGGGGAGTTGGAGGAACAGCGG AGGTGTAGGAGCTAAAGGCTCGGGAGTTGGAGGAACAGCGG Direct Gain 0 0.94931047298044 0 0.831915259361267 prediction 0.898620945960881 Functional Gain - DLAT ENSG00000150768 CDS Human protein_coding chr11:111909992 chr11:111909992 nonsynonymous SNV 0.808 0 21 hm5C_associated_SNPs_131364 0 0 0 0 0 Cytosol 0 0.500231643921001 0.663830518722534 0.000463287842002558 hm5C_site_51422 DeepMRMD:0.663830518722534;iRNA_m5C:0.000463287842002558 51423 chr15 102516411 102516411 1 + C G HNSC 102516411 - 102516391 102516431 41 GCTGCTGCGGTGGCGGCAGAGGAGGGATGGAGTCTGACACG GCTGCTGCGGTGGCGGCAGACGAGGGATGGAGTCTGACACG Direct Gain 0 0.949309090964594 0 0.88452136516571 prediction 0.898618181929188 Functional Gain - WASH3P ENSG00000185596 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102516411 chr15:102516411 . . 0 21 hm5C_associated_SNPs_131365 0 0 0 0 0 unknown 0 0.50023170195081 0.76904273033142 0.00046340390162003 hm5C_site_51423 DeepMRMD:0.76904273033142;iRNA_m5C:0.00046340390162003 51424 chr16 2949175 2949175 1 + A G rs7204314 2949175 - 2949155 2949195 41 CTATGGCTGGGTTGGTGGCCTGGGAGGATGCGCCTGTTGTC CTATGGCTGGGTTGGTGGCCCGGGAGGATGCGCCTGTTGTC Direct Gain 0 0.949297819255585 0 0.931635975837708 prediction 0.898595638511169 Functional Gain - FLYWCH2 ENSG00000162076 UTR3 Human protein_coding chr16:2949175 chr16:2949175 . . 0 21 hm5C_associated_SNPs_131366 0 0 0 0 0 Ribosome 0 0.500231644587613 0.863271951675416 0.000463289175226089 hm5C_site_51424 DeepMRMD:0.863271951675416;iRNA_m5C:0.000463289175226089 51425 chrX 30261826 30261826 1 + T C rs73205834 30261826 + 30261806 30261846 41 TAAGAGAAGACTTTAAGAGATGAGGGAGAGAGAGCCAGAGA TAAGAGAAGACTTTAAGAGACGAGGGAGAGAGAGCCAGAGA Direct Gain 0 0.949274155133363 0 0.470073968172073 prediction 0.898548310266726 Functional Gain - MAGEB4 ENSG00000120289 UTR3 Human protein_coding chrX:30261826 chrX:30261826 . . 0 21 hm5C_associated_SNPs_131367 0 0 0 1 1 Nucleus 0 0.50023164403537 0 0.000463288070740919 hm5C_site_51425 DeepMRMD:0;iRNA_m5C:0.000463288070740919 51426 chr11 74680719 74680719 1 + T C LUSC 74680719 + 74680699 74680739 41 GAATGGATCCTGATGATATTTGGCAGCTGTCCTCCAGTCTT GAATGGATCCTGATGATATTCGGCAGCTGTCCTCCAGTCTT Direct Gain 0 0.949272881639378 0 0.92859011888504 prediction 0.898545763278756 Functional Gain - SPCS2 ENSG00000118363 CDS Human protein_coding chr11:74680719 chr11:74680719 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131368 0 0 1 0 1 Ribosome 0 0.500231645100341 0.85718023777008 0.000463290200682476 hm5C_site_51426 DeepMRMD:0.85718023777008;iRNA_m5C:0.000463290200682476 51427 chr7 73523395 73523395 1 + C G rs569625381 73523395 - 73523375 73523415 41 TTTGCCCGGGGCCGCACAGCGGGGGTGGCTGGCTCTGCCCA TTTGCCCGGGGCCGCACAGCCGGGGTGGCTGGCTCTGCCCA Direct Gain 0 0.949254846778815 0 0.94739830493927 prediction 0.89850969355763 Functional Gain - LIMK1 ENSG00000106683 intronic Human protein_coding chr7:73523395 chr7:73523395 . . 0 21 hm5C_associated_SNPs_131369 0 0 0 0 0 Ribosome 0 0.500231643921092 0.89479660987854 0.000463287842184856 hm5C_site_51427 DeepMRMD:0.89479660987854;iRNA_m5C:0.000463287842184856 51428 chr6 33373158 33373158 1 + A G UCEC 33373158 - 33373138 33373178 41 GAGGGATCAGCCCCTCCAACTGGGGGTCTCCCCCAGGCCCA GAGGGATCAGCCCCTCCAACCGGGGGTCTCCCCCAGGCCCA Direct Gain 0 0.949243182568545 0 0.925702810287476 prediction 0.89848636513709 Functional Gain - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33373158 chr6:33373158 nonsynonymous SNV 0.995 1 21 hm5C_associated_SNPs_131370 0 0 0 0 0 Cytosol 0 0.500231643920707 0.851405620574952 0.000463287841413029 hm5C_site_51428 DeepMRMD:0.851405620574952;iRNA_m5C:0.000463287841413029 51429 chr22 36123215 36123215 1 + G C BLCA 36123215 + 36123195 36123235 41 CTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAAC CTCCCGGGGCAGGGCTGTTCCAGGATCCCGTGTGGTTAAAC Direct Gain 0 0.949232661338097 0 0.893677115440369 prediction 0.898465322676195 Functional Gain - APOL5 ENSG00000128313 CDS Human protein_coding chr22:36123215 chr22:36123215 nonsynonymous SNV 0.003 2 21 hm5C_associated_SNPs_131371 0 0 0 0 1 unknown 0 0.500231643921092 0.787354230880738 0.000463287842184856 hm5C_site_51429 DeepMRMD:0.787354230880738;iRNA_m5C:0.000463287842184856 51430 chr11 59522853 59522853 1 + T C rs565374444 59522853 + 59522833 59522873 41 CGCCGGCCCGGGAGCCGGATTTGGAGCGCGAGGCGCCGGTG CGCCGGCCCGGGAGCCGGATCTGGAGCGCGAGGCGCCGGTG Direct Gain 0 0.949206132178851 0 0.943800389766693 prediction 0.898412264357701 Functional Gain - STX3 ENSG00000166900 UTR5 Human protein_coding chr11:59522853 chr11:59522853 . . 0 21 hm5C_associated_SNPs_131372 0 0 1 0 0 Cytosol 0 0.500231643921051 0.887600779533386 0.000463287842102478 hm5C_site_51430 DeepMRMD:0.887600779533386;iRNA_m5C:0.000463287842102478 51431 chr15 90771203 90771203 1 + C G BLCA 90771203 - 90771183 90771223 41 AGTCGGGTCGCCAGGTTGGAGAGGAGCGGGCAGGCCAAAGT AGTCGGGTCGCCAGGTTGGACAGGAGCGGGCAGGCCAAAGT Direct Gain 0 0.949192096383953 0 0.663551986217499 prediction 0.898384192767905 Functional Gain - SEMA4B ENSG00000185033 CDS Human protein_coding chr15:90771203 chr15:90771203 synonymous SNV . 0 21 hm5C_associated_SNPs_131373 0 0 0 0 0 chromatin 0 0.500231642763967 0.327103972434998 0.000463285527934731 hm5C_site_51431 DeepMRMD:0.327103972434998;iRNA_m5C:0.000463285527934731 51432 chr22 30408500 30408500 1 + A G UCEC 30408500 - 30408480 30408520 41 GCTTAGCCAATGCCACAATCTGGGGGGTGCGGTCCCAGCCA GCTTAGCCAATGCCACAATCCGGGGGGTGCGGTCCCAGCCA Direct Gain 0 0.949170517561753 0 0.959287405014038 prediction 0.898341035123506 Functional Gain - MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30408500 chr22:30408500 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_131374 0 0 0 0 0 Ribosome 0 0.500231643921092 0.918574810028076 0.000463287842184856 hm5C_site_51432 DeepMRMD:0.918574810028076;iRNA_m5C:0.000463287842184856 51433 chr3 9935070 9935070 1 + T C rs11554811 9935070 + 9935050 9935090 41 AAGCATAAATGAAGCCTCTTTGGGGTGAAGCCTGGACATCC AAGCATAAATGAAGCCTCTTCGGGGTGAAGCCTGGACATCC Direct Gain 0 0.949169624982753 0 0.902137398719788 prediction 0.898339249965505 Functional Gain - JAGN1 ENSG00000171135 UTR3 Human protein_coding chr3:9935070 chr3:9935070 . . 0 21 hm5C_associated_SNPs_131375 0 0 1 0 0 cytosol 0 0.500231643921092 0.804274797439576 0.000463287842184856 hm5C_site_51433 DeepMRMD:0.804274797439576;iRNA_m5C:0.000463287842184856 51434 chr21 45540617 45540617 1 + T C HNSC 45540617 + 45540597 45540637 41 GCAGGGGCGCAGGACTCCTTTGAGATTTTCGTGTGGTCCAT GCAGGGGCGCAGGACTCCTTCGAGATTTTCGTGTGGTCCAT Direct Gain 0 0.949134045133931 0 0.900740206241608 prediction 0.898268090267861 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45540617 chr21:45540617 synonymous SNV . 0 21 hm5C_associated_SNPs_131376 0 0 1 0 1 Nucleus 0 0.500231641673523 0.801480412483216 0.000463283347045262 hm5C_site_51434 DeepMRMD:0.801480412483216;iRNA_m5C:0.000463283347045262 51435 chr19 19223521 19223521 1 + C G rs568170651 19223521 - 19223501 19223541 41 CCTGGCTGTGTGCAGGGGTGGGGGACAGCACTGTCCCCAAC CCTGGCTGTGTGCAGGGGTGCGGGACAGCACTGTCCCCAAC Direct Gain 0 0.94911984161911 0 0.834279954433441 prediction 0.89823968323822 Functional Gain - SLC25A42 ENSG00000181035 UTR3 Human protein_coding chr19:19223521 chr19:19223521 . . 0 21 hm5C_associated_SNPs_131377 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643922016 0.668559908866882 0.000463287844032045 hm5C_site_51435 DeepMRMD:0.668559908866882;iRNA_m5C:0.000463287844032045 51436 chr9 91150093 91150093 1 + A G rs199850250 91150093 - 91150073 91150113 41 GACAGCGCGGCACCCGCCTCTGGGAGCGGGGCCAGCCAGGC GACAGCGCGGCACCCGCCTCCGGGAGCGGGGCCAGCCAGGC Direct Gain 0 0.949106596820019 0 0.967230200767517 prediction 0.898213193640039 Functional Gain - NXNL2 ENSG00000130045 UTR5 Human protein_coding chr9:91150093 chr9:91150093 . . 0 21 hm5C_associated_SNPs_131378 0 0 0 0 0 Nucleus 0 0.500231643921094 0.934460401535034 0.000463287842187743 hm5C_site_51436 DeepMRMD:0.934460401535034;iRNA_m5C:0.000463287842187743 51437 chr4 107246190 107246190 1 + G C rs11544777 107246190 + 107246170 107246210 41 GCAAATAATGATGCTGTTCTGAAGAGACTGGAGCAGAAGGG GCAAATAATGATGCTGTTCTCAAGAGACTGGAGCAGAAGGG Direct Gain 0 0.949105460181064 0 0.837256550788879 prediction 0.898210920362127 Functional Gain - AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107246190 chr4:107246190 synonymous SNV . 0 21 hm5C_associated_SNPs_131379 0 0 1 0 2 Ribosome 0 0.500231643921093 0.674513101577758 0.000463287842185522 hm5C_site_51437 DeepMRMD:0.674513101577758;iRNA_m5C:0.000463287842185522 51438 chrX 49645737 49645737 1 + T C UCEC 49645737 + 49645717 49645757 41 GTTTACGAGGCCAGAGCACTTAGGAAGCAGTGCCAAAATCA GTTTACGAGGCCAGAGCACTCAGGAAGCAGTGCCAAAATCA Direct Gain 0 0.949090680203854 0 0.895400762557983 prediction 0.898181360407708 Functional Gain - USP27X ENSG00000242013 CDS Human other chrX:49645737 chrX:49645737 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131380 0 0 0 0 0 exosome 0 0.500230017080115 0.790801525115966 0.000460034160229883 hm5C_site_51438 DeepMRMD:0.790801525115966;iRNA_m5C:0.000460034160229883 51439 chr1 206680984 206680984 1 + T C rs575075703 206680984 + 206680964 206681004 41 AGCGCCCGTACCCGCTACTATTGGACCCCGAGCCGCCGCGC AGCGCCCGTACCCGCTACTACTGGACCCCGAGCCGCCGCGC Direct Gain 0 0.949090503459268 0 0.908382296562195 prediction 0.898181006918537 Functional Gain - RASSF5 ENSG00000136653 CDS Human other chr1:206680984 chr1:206680984 synonymous SNV . 0 21 hm5C_associated_SNPs_131381 0 0 0 0 0 chromatin 0 0.500231643930663 0.81676459312439 0.000463287861325767 hm5C_site_51439 DeepMRMD:0.81676459312439;iRNA_m5C:0.000463287861325767 51440 chr7 97362045 97362045 1 + A C SKCM 97362045 + 97362025 97362065 41 GGTACGACAGCGACCAGATCAAGGTGAGGCCCCTTCCCAGG GGTACGACAGCGACCAGATCCAGGTGAGGCCCCTTCCCAGG Direct Gain 0 0.949075649898442 0 0.915594220161438 prediction 0.898151299796885 Functional Gain - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97362045 chr7:97362045 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131382 0 0 0 0 1 exosome 0 0.500231643921086 0.831188440322876 0.000463287842171756 hm5C_site_51440 DeepMRMD:0.831188440322876;iRNA_m5C:0.000463287842171756 51441 chr8 123964813 123964813 1 + A G rs113444944 123964813 - 123964793 123964833 41 GATGGGCTGCGTCACCTTTGTGGGGGCCAACTGGGCGGGCA GATGGGCTGCGTCACCTTTGCGGGGGCCAACTGGGCGGGCA Direct Gain 0 0.949072426492917 0 0.953760027885437 prediction 0.898144852985834 Functional Gain - ZHX2 ENSG00000178764 CDS Human protein_coding chr8:123964813 chr8:123964813 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_131383 0 0 0 0 0 Nucleus 0 0.500231636890623 0.907520055770874 0.000463273781245999 hm5C_site_51441 DeepMRMD:0.907520055770874;iRNA_m5C:0.000463273781245999 51442 chr11 1902771 1902771 1 + T C rs147746785 1902771 + 1902751 1902791 41 ACGAGGGGGCGCAGGGCGCCTTGGACAGCGGAGAGCCCCCC ACGAGGGGGCGCAGGGCGCCCTGGACAGCGGAGAGCCCCCC Direct Gain 0 0.94906509542692 0 0.581227779388428 prediction 0.898130190853841 Functional Gain - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1902771 chr11:1902771 synonymous SNV . 0 21 hm5C_associated_SNPs_131384 0 0 0 0 1 exosome 0 0.500231636309158 0.162455558776856 0.000463272618315136 hm5C_site_51442 DeepMRMD:0.162455558776856;iRNA_m5C:0.000463272618315136 51443 chr1 55277492 55277492 1 + A C rs185058391 55277492 + 55277472 55277512 41 CTATCCAGGCCCTGGAAATTATGGGGAGAAGGGTAACCCAT CTATCCAGGCCCTGGAAATTCTGGGGAGAAGGGTAACCCAT Direct Gain 0 0.94904575956058 0 0.825932800769806 prediction 0.89809151912116 Functional Gain - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277492 chr1:55277492 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131385 0 0 0 0 1 exosome 0 0.500231643921098 0.651865601539612 0.000463287842195736 hm5C_site_51443 DeepMRMD:0.651865601539612;iRNA_m5C:0.000463287842195736 51444 chr3 184052727 184052727 1 + A G rs375395550 184052727 - 184052707 184052747 41 CCGGGCCATCTGTGTGTCCATGGGGCTCCAGGTCCCCGGCC CCGGGCCATCTGTGTGTCCACGGGGCTCCAGGTCCCCGGCC Direct Gain 0 0.949029984108989 0 0.915978908538818 prediction 0.898059968217979 Functional Gain - EIF4G1 ENSG00000114867 UTR3 Human protein_coding chr3:184052727 chr3:184052727 . . 0 21 hm5C_associated_SNPs_131386 0 0 0 0 0 Nucleus 0 0.500231643694252 0.831957817077636 0.000463287388504652 hm5C_site_51444 DeepMRMD:0.831957817077636;iRNA_m5C:0.000463287388504652 51445 chr5 131630483 131630483 1 + G C LUSC 131630483 + 131630463 131630503 41 GTGCCGGACGCCGCGAACCTGAGCAGCGCCTGGCGCAACAA GTGCCGGACGCCGCGAACCTCAGCAGCGCCTGGCGCAACAA Direct Gain 0 0.949014050143512 0 0.858917236328125 prediction 0.898028100287025 Functional Gain - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131630483 chr5:131630483 synonymous SNV . 0 21 hm5C_associated_SNPs_131387 0 0 0 0 0 Endoplasmic reticulum 0 0.500231647738777 0.71783447265625 0.000463295477554526 hm5C_site_51445 DeepMRMD:0.71783447265625;iRNA_m5C:0.000463295477554526 51446 chr5 154194057 154194057 1 + C G rs574576917 154194057 - 154194037 154194077 41 GGCTGCATAGTTGGCTTGAGGGGGAGCAGGAGGTTAGGGGT GGCTGCATAGTTGGCTTGAGCGGGAGCAGGAGGTTAGGGGT Direct Gain 0 0.948993079112884 0 0.899126648902893 prediction 0.897986158225767 Functional Gain - LARP1 ENSG00000155506 UTR3 Human protein_coding chr5:154194057 chr5:154194057 . . 0 21 hm5C_associated_SNPs_131388 0 0 0 0 0 Cytosol 0 0.500231643921092 0.798253297805786 0.000463287842184856 hm5C_site_51446 DeepMRMD:0.798253297805786;iRNA_m5C:0.000463287842184856 51447 chr17 7838371 7838371 1 + C G rs144838552 7838371 - 7838351 7838391 41 TGGCCGAAGGCTGGTGTAGCGGGGAAACAGCTCCTCCAGGG TGGCCGAAGGCTGGTGTAGCCGGGAAACAGCTCCTCCAGGG Direct Gain 0 0.948981914565326 0 0.894345283508301 prediction 0.897963829130651 Functional Gain - CNTROB ENSG00000170037 CDS Human protein_coding chr17:7838371 chr17:7838371 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_131389 0 0 0 0 0 Nucleus 0 0.500231643921099 0.788690567016602 0.000463287842198845 hm5C_site_51447 DeepMRMD:0.788690567016602;iRNA_m5C:0.000463287842198845 51448 chr15 44846797 44846797 1 + T C UCEC 44846797 + 44846777 44846817 41 GCTAACACCAGAAGAACAATTAGCAGATAAACTGCGGCTAA GCTAACACCAGAAGAACAATCAGCAGATAAACTGCGGCTAA Direct Gain 0 0.948922192739804 0 0.936603486537933 prediction 0.897844385479608 Functional Gain - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44846797 chr15:44846797 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131390 0 0 1 0 2 Ribosome 0 0.500231643123009 0.873206973075866 0.00046328624601899 hm5C_site_51448 DeepMRMD:0.873206973075866;iRNA_m5C:0.00046328624601899 51449 chr9 96051184 96051184 1 + C G BLCA 96051184 - 96051164 96051204 41 GAGGGGAGGAGGGGGCCAAAGGGGCTGGGGGTGCCCCAGGA GAGGGGAGGAGGGGGCCAAACGGGCTGGGGGTGCCCCAGGA Direct Gain 0 0.948907960564645 0 0.947901964187622 prediction 0.89781592112929 Functional Gain - WNK2 ENSG00000165238 CDS Human protein_coding chr9:96051184 chr9:96051184 nonsynonymous SNV 0.031 3 21 hm5C_associated_SNPs_131391 0 0 0 0 0 Nucleus 0 0.500231643921092 0.895803928375244 0.000463287842184856 hm5C_site_51449 DeepMRMD:0.895803928375244;iRNA_m5C:0.000463287842184856 51450 chr11 118764745 118764745 1 + C G rs144978847 118764745 - 118764725 118764765 41 CCACAGGTGATGTGGATGGAGAGGAGGCGGCGGTGGCGGTA CCACAGGTGATGTGGATGGACAGGAGGCGGCGGTGGCGGTA Direct Gain 0 0.948903055799475 0 0.842497885227203 prediction 0.897806111598949 Functional Gain - CXCR5 ENSG00000160683 CDS Human protein_coding chr11:118764745 chr11:118764745 synonymous SNV . 0 21 hm5C_associated_SNPs_131392 0 0 0 0 0 chromatin 0 0.500231643921091 0.684995770454406 0.000463287842181082 hm5C_site_51450 DeepMRMD:0.684995770454406;iRNA_m5C:0.000463287842181082 51451 chr1 95709967 95709967 1 + T C LUSC 95709967 + 95709947 95709987 41 AGCAAGCAGAGAGCCTTTTGTCGGAGCCTATGGTTCATGAG AGCAAGCAGAGAGCCTTTTGCCGGAGCCTATGGTTCATGAG Direct Gain 0 0.94886974024752 0 0.781146705150604 prediction 0.897739480495041 Functional Gain - RWDD3 ENSG00000122481 CDS Human protein_coding chr1:95709967 chr1:95709967 nonsynonymous SNV 0.040 0 21 hm5C_associated_SNPs_131393 0 0 1 0 0 Cytosol 0 0.500231643971919 0.562293410301208 0.000463287943838875 hm5C_site_51451 DeepMRMD:0.562293410301208;iRNA_m5C:0.000463287943838875 51452 chr2 73115530 73115530 1 + T G COAD 73115530 - 73115510 73115550 41 CGCTGGAAGTCAGGCAGAGCATGGAGGTCAAGTTCAGTGCC CGCTGGAAGTCAGGCAGAGCCTGGAGGTCAAGTTCAGTGCC Direct Gain 0 0.948865891579513 0 0.872851610183716 prediction 0.897731783159025 Functional Gain - SPR ENSG00000116096 CDS Human protein_coding chr2:73115530 chr2:73115530 nonsynonymous SNV 0.902 2 21 hm5C_associated_SNPs_131394 0 0 0 0 0 Ribosome 0 0.500231643921101 0.745703220367432 0.00046328784220151 hm5C_site_51452 DeepMRMD:0.745703220367432;iRNA_m5C:0.00046328784220151 51453 chr11 44081461 44081461 1 + G C HNSC 44081461 + 44081441 44081481 41 AAGCAGTTGGAGGATGCAATGAGGGAGTAGGCCGTCTGCCT AAGCAGTTGGAGGATGCAATCAGGGAGTAGGCCGTCTGCCT Direct Gain 0 0.94885042713024 0 0.981701254844666 prediction 0.897700854260481 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44081461 chr11:44081461 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131395 0 0 0 0 1 Exosome 0 0.500231643921196 0.963402509689332 0.000463287842392468 hm5C_site_51453 DeepMRMD:0.963402509689332;iRNA_m5C:0.000463287842392468 51454 chr1 1222975 1222975 1 + C G LUAD 1222975 - 1222955 1222995 41 GCCAGGGGCTGGCACCCACCGTGGGTGATGCCGGGGCGCTG GCCAGGGGCTGGCACCCACCCTGGGTGATGCCGGGGCGCTG Direct Gain 0 0.948846636981593 0 0.72329044342041 prediction 0.897693273963187 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222975 chr1:1222975 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131396 0 0 0 0 0 exosome 0 0.50023159643124 0.44658088684082 0.000463192862480977 hm5C_site_51454 DeepMRMD:0.44658088684082;iRNA_m5C:0.000463192862480977 51455 chr16 3451196 3451196 1 + T C rs571737989 3451196 + 3451176 3451216 41 GTGGGCGTCTCCGCAGCGAGTGGCATCGGCCCCGCCCCCAG GTGGGCGTCTCCGCAGCGAGCGGCATCGGCCCCGCCCCCAG Direct Gain 0 0.948840093112456 0 0.933087825775146 prediction 0.897680186224913 Functional Gain - ZNF174 ENSG00000262621 intronic Human protein_coding chr16:3451196 chr16:3451196 . . 0 21 hm5C_associated_SNPs_131397 0 0 0 0 0 Ribosome 0 0.500231643921093 0.866175651550292 0.000463287842185078 hm5C_site_51455 DeepMRMD:0.866175651550292;iRNA_m5C:0.000463287842185078 51456 chr17 40722064 40722064 1 + G C BLCA 40722064 + 40722044 40722084 41 AAGGGGAGGACCAGGTCTCTGACCAGGTCAAGTTCAACGTG AAGGGGAGGACCAGGTCTCTCACCAGGTCAAGTTCAACGTG Direct Gain 0 0.948809215777643 0 0.729728102684021 prediction 0.897618431555285 Functional Gain - MLX ENSG00000108788 CDS Human protein_coding chr17:40722064 chr17:40722064 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131398 0 0 1 0 1 Ribosome 0 0.500231643921092 0.459456205368042 0.000463287842184856 hm5C_site_51456 DeepMRMD:0.459456205368042;iRNA_m5C:0.000463287842184856 51457 chr14 74824281 74824281 1 + A G SKCM 74824281 - 74824261 74824301 41 TCCAGGGTCTTGGCCGGCGATGAGAGTGGGGCCAGGGCTGG TCCAGGGTCTTGGCCGGCGACGAGAGTGGGGCCAGGGCTGG Direct Gain 0 0.948808006278442 0 0.918249189853668 prediction 0.897616012556883 Functional Gain - VRTN ENSG00000133980 CDS Human protein_coding chr14:74824281 chr14:74824281 synonymous SNV . 0 21 hm5C_associated_SNPs_131399 0 0 0 0 0 unknown 0 0.500231643933026 0.836498379707336 0.000463287866052875 hm5C_site_51457 DeepMRMD:0.836498379707336;iRNA_m5C:0.000463287866052875 51458 chr12 107937752 107937752 1 + C G BLCA 107937752 - 107937732 107937772 41 TTGCCGTGGTGCTTGGCATTGAGGGGCTGCAGGTGATGCAT TTGCCGTGGTGCTTGGCATTCAGGGGCTGCAGGTGATGCAT Direct Gain 0 0.948802168678904 0 0.941190123558044 prediction 0.897604337357808 Functional Gain - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:107937752 chr12:107937752 synonymous SNV . 0 21 hm5C_associated_SNPs_131400 0 0 0 0 0 cytosol 0 0.500231643920563 0.882380247116088 0.000463287841125926 hm5C_site_51458 DeepMRMD:0.882380247116088;iRNA_m5C:0.000463287841125926 51459 chr4 3592350 3592350 1 + G C rs533640038 3592350 + 3592330 3592370 41 GGGCAACTCCTGCCCCCTGTGGGGGGACTGGACTGCCTTAG GGGCAACTCCTGCCCCCTGTCGGGGGACTGGACTGCCTTAG Direct Gain 0 0.948781140361309 0 0.993110060691833 prediction 0.897562280722618 Functional Gain - LINC00955 ENSG00000216560 downstream Human processed_transcript chr4:3592350 chr4:3592350 . . 0 21 hm5C_associated_SNPs_131401 0 0 0 0 0 unknown 0 0.500231643921092 0.986220121383666 0.000463287842184856 hm5C_site_51459 DeepMRMD:0.986220121383666;iRNA_m5C:0.000463287842184856 51460 chr21 37507580 37507580 1 + T C rs138199629 37507580 + 37507560 37507600 41 GAACTGTGCCGACAGTTCTCTGGGGATGTGGTGCTCACCGC GAACTGTGCCGACAGTTCTCCGGGGATGTGGTGCTCACCGC Direct Gain 0 0.94876855931091 0 0.927695035934448 prediction 0.89753711862182 Functional Gain - CBR3 ENSG00000159231 CDS Human protein_coding chr21:37507580 chr21:37507580 synonymous SNV . 0 21 hm5C_associated_SNPs_131402 0 0 0 0 0 exosome 0 0.500233431396481 0.855390071868896 0.000466862792961598 hm5C_site_51460 DeepMRMD:0.855390071868896;iRNA_m5C:0.000466862792961598 51461 chr6 139186158 139186158 1 + A C PAAD 139186158 + 139186138 139186178 41 AGTGATTGGCTGGGATCCCAATGGGGAAAGGCCCCCTCTTC AGTGATTGGCTGGGATCCCACTGGGGAAAGGCCCCCTCTTC Direct Gain 0 0.94876521607231 0 0.966603398323059 prediction 0.897530432144621 Functional Gain - ECT2L ENSG00000203734 CDS Human protein_coding chr6:139186158 chr6:139186158 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131403 0 0 0 0 1 chromatin 0 0.500231643921015 0.933206796646118 0.000463287842029869 hm5C_site_51461 DeepMRMD:0.933206796646118;iRNA_m5C:0.000463287842029869 51462 chr2 71163111 71163111 1 + T C rs17853498 71163111 + 71163091 71163131 41 ATGGAGATAGACAGCAGGCCTGGGGGGCTCCCCGGCAGTAG ATGGAGATAGACAGCAGGCCCGGGGGGCTCCCCGGCAGTAG Direct Gain 0 0.948764693697199 0 0.779722809791565 prediction 0.897529387394397 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71163111 chr2:71163111 synonymous SNV . 0 21 hm5C_associated_SNPs_131404 2 0 0 0 1 Endoplasmic reticulum 0 0.500231643921091 0.55944561958313 0.000463287842182858 hm5C_site_51462 DeepMRMD:0.55944561958313;iRNA_m5C:0.000463287842182858 not specified not specified 51463 chr4 89650755 89650755 1 + T C rs551910973 89650755 + 89650735 89650775 41 AAGGAACAGGTGCTCAGGAATTGGAGCATCTGGCACGCAGG AAGGAACAGGTGCTCAGGAACTGGAGCATCTGGCACGCAGG Direct Gain 0 0.948711094328358 0 0.827787458896637 prediction 0.897422188656716 Functional Gain - FAM13A-AS1 ENSG00000248019 ncRNA_exonic Human antisense chr4:89650755 chr4:89650755 . . 0 21 hm5C_associated_SNPs_131405 0 0 0 0 0 unknown 0 0.500231643921092 0.655574917793274 0.000463287842184856 hm5C_site_51463 DeepMRMD:0.655574917793274;iRNA_m5C:0.000463287842184856 51464 chr2 135711822 135711822 1 + G C BLCA 135711822 + 135711802 135711842 41 GGAATACCACCCACTGTTCTGAGGAGTCCTGTTGGCCTGAG GGAATACCACCCACTGTTCTCAGGAGTCCTGTTGGCCTGAG Direct Gain 0 0.948690000877196 0 0.971561670303345 prediction 0.897380001754392 Functional Gain - CCNT2 ENSG00000082258 CDS Human protein_coding chr2:135711822 chr2:135711822 synonymous SNV . 0 21 hm5C_associated_SNPs_131406 0 0 1 0 0 Nucleus 0 0.50023164392109 0.94312334060669 0.000463287842179083 hm5C_site_51464 DeepMRMD:0.94312334060669;iRNA_m5C:0.000463287842179083 51465 chr12 118582585 118582585 1 + T C UCEC 118582585 + 118582565 118582605 41 ATGACTATGTGCCCAAACTGTACGAGCAGCTGTCTGGGAAG ATGACTATGTGCCCAAACTGCACGAGCAGCTGTCTGGGAAG Direct Gain 0 0.94868770968801 0 0.751337885856628 prediction 0.89737541937602 Functional Gain - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118582585 chr12:118582585 nonsynonymous SNV 0.995 1 21 hm5C_associated_SNPs_131407 0 0 1 0 0 Ribosome 0 0.500231659451371 0.502675771713256 0.00046331890274165 hm5C_site_51465 DeepMRMD:0.502675771713256;iRNA_m5C:0.00046331890274165 51466 chr11 6898588 6898588 1 + A C COAD 6898588 + 6898568 6898608 41 GTCAGCTGAGGGGAAACATCAGGCATTCTCCACCTGTTCCG GTCAGCTGAGGGGAAACATCCGGCATTCTCCACCTGTTCCG Direct Gain 0 0.94868373641721 0 0.766923010349274 prediction 0.897367472834421 Functional Gain - OR10A4 ENSG00000170782 CDS Human protein_coding chr11:6898588 chr11:6898588 nonsynonymous SNV 0.961 2 21 hm5C_associated_SNPs_131408 0 0 0 0 0 exosome 0 0.500231643921095 0.533846020698548 0.000463287842190629 hm5C_site_51466 DeepMRMD:0.533846020698548;iRNA_m5C:0.000463287842190629 51467 chr17 38320262 38320262 1 + A G STAD 38320262 - 38320242 38320282 41 GGTGGAGTTGGGGTGGTTTCTGGGACTGGAGGTGCTGGAAT GGTGGAGTTGGGGTGGTTTCCGGGACTGGAGGTGCTGGAAT Direct Gain 0 0.948638369598533 0 0.960592150688171 prediction 0.897276739197067 Functional Gain - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320262 chr17:38320262 synonymous SNV . 0 21 hm5C_associated_SNPs_131409 0 0 0 0 0 Ribosome 0 0.500231643912186 0.921184301376342 0.000463287824371772 hm5C_site_51467 DeepMRMD:0.921184301376342;iRNA_m5C:0.000463287824371772 51468 chr3 97868418 97868418 1 + T C rs77954988 97868418 + 97868398 97868438 41 ATCCCAATGTACTTACTCCTTGGGAATTTAGCTTTTGTGGA ATCCCAATGTACTTACTCCTCGGGAATTTAGCTTTTGTGGA Direct Gain 0 0.948618061317564 0 0.734557449817657 prediction 0.897236122635128 Functional Gain - OR5H14 ENSG00000236032 CDS Human protein_coding chr3:97868418 chr3:97868418 synonymous SNV . 0 21 hm5C_associated_SNPs_131410 0 0 0 0 0 unknown 0 0.500231643926911 0.469114899635314 0.00046328785382177 hm5C_site_51468 DeepMRMD:0.469114899635314;iRNA_m5C:0.00046328785382177 51469 chr18 72775227 72775227 1 + C G BRCA 72775227 - 72775207 72775247 41 GCTGGCCTCCTGCTGCTTCTGAGGGGCTTCTCCTTGACGAG GCTGGCCTCCTGCTGCTTCTCAGGGGCTTCTCCTTGACGAG Direct Gain 0 0.948597798525802 0 0.976248800754547 prediction 0.897195597051605 Functional Gain - ZNF407 ENSG00000215421 CDS Human protein_coding chr18:72775227 chr18:72775227 synonymous SNV . 0 21 hm5C_associated_SNPs_131411 0 0 0 0 0 Cytosol 0 0.500231643925653 0.952497601509094 0.000463287851305116 hm5C_site_51469 DeepMRMD:0.952497601509094;iRNA_m5C:0.000463287851305116 51470 chr1 203134990 203134990 1 + A G LUSC 203134990 - 203134970 203135010 41 TTCTGGGAGATCCTCGTCAATGGGAGGTGCAGGCTGGCAGC TTCTGGGAGATCCTCGTCAACGGGAGGTGCAGGCTGGCAGC Direct Gain 0 0.948597171498531 0 0.90157276391983 prediction 0.897194342997062 Functional Gain - ADORA1 ENSG00000163485 CDS Human protein_coding chr1:203134990 chr1:203134990 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131412 0 0 0 0 0 exosome 0 0.500231643921374 0.80314552783966 0.000463287842747295 hm5C_site_51470 DeepMRMD:0.80314552783966;iRNA_m5C:0.000463287842747295 51471 chr9 131133678 131133678 1 + G C LIHC 131133678 + 131133658 131133698 41 ACATGGCTGCGCCCTTGTCAGTGGAGGTGGAGTTCGGGTGA ACATGGCTGCGCCCTTGTCACTGGAGGTGGAGTTCGGGTGA Direct Gain 0 0.948580954171735 0 0.857363998889923 prediction 0.89716190834347 Functional Gain - URM1 ENSG00000167118 CDS Human protein_coding chr9:131133678 chr9:131133678 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_131413 0 0 1 0 1 Ribosome 0 0.500231643916895 0.714727997779846 0.00046328783378935 hm5C_site_51471 DeepMRMD:0.714727997779846;iRNA_m5C:0.00046328783378935 51472 chr19 56029523 56029523 1 + C G rs113619253 56029523 - 56029503 56029543 41 GTGAGGGGTTGTGGTGGGGTGAGGGGTTGTGGTGGGGTGAG GTGAGGGGTTGTGGTGGGGTCAGGGGTTGTGGTGGGGTGAG Direct Gain 0 0.948546178620641 0 0.903686881065369 prediction 0.897092357241282 Functional Gain - SSC5D ENSG00000179954 CDS Human protein_coding chr19:56029523 chr19:56029523 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_131414 0 0 0 0 0 nucleus 0 0.500231643921277 0.807373762130738 0.000463287842554561 hm5C_site_51472 DeepMRMD:0.807373762130738;iRNA_m5C:0.000463287842554561 51473 chr19 54496175 54496175 1 + G C HNSC 54496175 + 54496155 54496195 41 GCAAGAGGAGAACCGGCGGCGGGGGGCCGCGGGCCGGCGGC GCAAGAGGAGAACCGGCGGCCGGGGGCCGCGGGCCGGCGGC Direct Gain 0 0.948545636703953 0 0.989006161689758 prediction 0.897091273407905 Functional Gain - CACNG6 ENSG00000130433 CDS Human protein_coding chr19:54496175 chr19:54496175 nonsynonymous SNV 0.392 3 21 hm5C_associated_SNPs_131415 0 0 1 0 0 exosome 0 0.500231643921092 0.978012323379516 0.000463287842184856 hm5C_site_51473 DeepMRMD:0.978012323379516;iRNA_m5C:0.000463287842184856 51474 chr14 39649837 39649837 1 + A C COAD 39649837 + 39649817 39649857 41 GAACAGAAGGCGGAACAAGAAGAGGGTAAGGTGGCTCAGCG GAACAGAAGGCGGAACAAGACGAGGGTAAGGTGGCTCAGCG Direct Gain 0 0.948543661478394 0 0.885835587978363 prediction 0.897087322956787 Functional Gain - PNN ENSG00000100941 CDS Human protein_coding chr14:39649837 chr14:39649837 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131416 0 0 1 0 0 Nucleus 0 0.500231643966247 0.771671175956726 0.00046328793249395 hm5C_site_51474 DeepMRMD:0.771671175956726;iRNA_m5C:0.00046328793249395 51475 chr11 199942 199942 1 + A G READ 199942 - 199922 199962 41 AGGGCTTGGTCAGGGTCACCTGGGAGAGGAGGGGCTATGAT AGGGCTTGGTCAGGGTCACCCGGGAGAGGAGGGGCTATGAT Direct Gain 0 0.948511632047432 0 0.959342241287231 prediction 0.897023264094863 Functional Gain - ODF3 ENSG00000177947 splicing Human protein_coding chr11:199942 chr11:199942 . 0.872 0 21 hm5C_associated_SNPs_131417 0 0 1 0 0 exosome 0 0.50023164392027 0.918684482574462 0.000463287840540394 hm5C_site_51475 DeepMRMD:0.918684482574462;iRNA_m5C:0.000463287840540394 51476 chr2 220371465 220371465 1 + T G UCEC 220371465 - 220371445 220371485 41 GCTCCTTGTGTGGCAGAACAATCGAGTTCAGGATGAGCACC GCTCCTTGTGTGGCAGAACACTCGAGTTCAGGATGAGCACC Direct Gain 0 0.948489230148265 0 0.731606125831604 prediction 0.89697846029653 Functional Gain - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220371465 chr2:220371465 nonsynonymous SNV 0.997 4 21 hm5C_associated_SNPs_131418 0 0 0 0 0 Ribosome 0 0.500238382189888 0.463212251663208 0.000476764379776506 hm5C_site_51476 DeepMRMD:0.463212251663208;iRNA_m5C:0.000476764379776506 51477 chr12 64519823 64519823 1 + T G LUAD 64519823 - 64519803 64519843 41 GCAGGGAGGCACCCTTCTTGAAGGATAGTTCTCTGGCAGAC GCAGGGAGGCACCCTTCTTGCAGGATAGTTCTCTGGCAGAC Direct Gain 0 0.948474524538062 0 0.824181795120239 prediction 0.896949049076124 Functional Gain - SRGAP1 ENSG00000196935 CDS Human protein_coding chr12:64519823 chr12:64519823 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131419 0 0 0 0 0 Nucleus 0 0.500231638819752 0.648363590240478 0.000463277639504822 hm5C_site_51477 DeepMRMD:0.648363590240478;iRNA_m5C:0.000463277639504822 51478 chr10 105127790 105127790 1 + T C rs369532931 105127790 + 105127770 105127810 41 GACGGAGGTGGCGGTCAAGCTAGAGCCTGAGGGACCGCCAA GACGGAGGTGGCGGTCAAGCCAGAGCCTGAGGGACCGCCAA Direct Gain 0 0.948459380421071 0 0.917672991752625 prediction 0.896918760842142 Functional Gain - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105127790 chr10:105127790 nonsynonymous SNV 0.998 0 21 hm5C_associated_SNPs_131420 0 0 1 0 0 cytosol 0 0.500231643921092 0.83534598350525 0.000463287842184856 hm5C_site_51478 DeepMRMD:0.83534598350525;iRNA_m5C:0.000463287842184856 51479 chr19 38818751 38818751 1 + T C rs931750 38818751 + 38818731 38818771 41 GGGCTGAAGTCGGAGAAGCATAGGGACTAGGCCCAATCCAG GGGCTGAAGTCGGAGAAGCACAGGGACTAGGCCCAATCCAG Direct Gain 0 0.948443617406051 0 0.898274540901184 prediction 0.896887234812102 Functional Gain - KCNK6 ENSG00000099337 UTR3 Human protein_coding chr19:38818751 chr19:38818751 . . 0 21 hm5C_associated_SNPs_131421 0 0 1 0 0 Ribosome 0 0.500231643920786 0.796549081802368 0.000463287841571569 hm5C_site_51479 DeepMRMD:0.796549081802368;iRNA_m5C:0.000463287841571569 51480 chr11 61213920 61213920 1 + T C rs17702 61213920 + 61213900 61213940 41 AGCCAGCTGTGCGTGCTGTATGGAAAGCCTCCCGCCCTCCC AGCCAGCTGTGCGTGCTGTACGGAAAGCCTCCCGCCCTCCC Direct Gain 0 0.948439927491965 0 0.851571500301361 prediction 0.89687985498393 Functional Gain - SDHAF2 ENSG00000167985 UTR3 Human protein_coding chr11:61213920 chr11:61213920 . . 0 21 hm5C_associated_SNPs_131422 1 0 1 0 0 chromatin 0 0.500231643921092 0.703143000602722 0.000463287842184856 hm5C_site_51480 DeepMRMD:0.703143000602722;iRNA_m5C:0.000463287842184856 Pheochromocytoma Pheochromocytoma 51481 chr7 66237049 66237049 1 + T C SKCM 66237049 + 66237029 66237069 41 AGAAGCAGATTCAGGAGGACTGGGAGCTGGCGGAGCGGTAA AGAAGCAGATTCAGGAGGACCGGGAGCTGGCGGAGCGGTAA Direct Gain 0 0.948429766277571 0 0.839395761489868 prediction 0.896859532555143 Functional Gain - RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66237049 chr7:66237049 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_131423 0 0 1 0 1 Cytosol 0 0.500231643921099 0.678791522979736 0.000463287842198401 hm5C_site_51481 DeepMRMD:0.678791522979736;iRNA_m5C:0.000463287842198401 51482 chr8 56015598 56015598 1 + A G UCEC 56015598 - 56015578 56015618 41 GGCTCCAGGCTGCGGGCAGCTGGAGGCAGCAGCGGCCGTGG GGCTCCAGGCTGCGGGCAGCCGGAGGCAGCAGCGGCCGTGG Direct Gain 0 0.948429129970188 0 0.950308740139008 prediction 0.896858259940375 Functional Gain - XKR4 ENSG00000206579 CDS Human protein_coding chr8:56015598 chr8:56015598 nonsynonymous SNV 0.014 1 21 hm5C_associated_SNPs_131424 0 0 0 0 0 exosome 0 0.500231603505972 0.900617480278016 0.000463207011943911 hm5C_site_51482 DeepMRMD:0.900617480278016;iRNA_m5C:0.000463207011943911 51483 chr9 977181 977181 1 + C G LGG 977181 - 977161 977201 41 ACCCGCTGCCGCTCGATGATGAGGATGCACTTCTCGCAGGT ACCCGCTGCCGCTCGATGATCAGGATGCACTTCTCGCAGGT Direct Gain 0 0.948427385716302 0 0.972798824310303 prediction 0.896854771432605 Functional Gain - DMRT3 ENSG00000064218 CDS Human protein_coding chr9:977181 chr9:977181 synonymous SNV . 0 21 hm5C_associated_SNPs_131425 0 0 0 0 0 unknown 0 0.502141909101215 0.945597648620606 0.00428381820242985 hm5C_site_51483 DeepMRMD:0.945597648620606;iRNA_m5C:0.00428381820242985 51484 chr8 73921123 73921123 1 + T C LUSC 73921123 + 73921103 73921143 41 CCCAAGCGAGCCATTTAACATGGCGGAGGATGTTTCCTCAG CCCAAGCGAGCCATTTAACACGGCGGAGGATGTTTCCTCAG Direct Gain 0 0.948406091447634 0 0.777480006217957 prediction 0.896812182895268 Functional Gain - TERF1 ENSG00000147601 CDS Human protein_coding chr8:73921123 chr8:73921123 nonsynonymous SNV 0.550 4 21 hm5C_associated_SNPs_131426 0 0 1 0 0 Nucleus 0 0.500231643921004 0.554960012435914 0.000463287842007443 hm5C_site_51484 DeepMRMD:0.554960012435914;iRNA_m5C:0.000463287842007443 51485 chr9 131873617 131873617 1 + A G rs372907443 131873617 - 131873597 131873637 41 CCGGGCGACGGCCATGTCAGTGCGGGGCGCGCGGGGCGCAT CCGGGCGACGGCCATGTCAGCGCGGGGCGCGCGGGGCGCAT Direct Gain 0 0.948399971103485 0 0.926491379737854 prediction 0.896799942206971 Functional Gain - PTPA ENSG00000119383 UTR5 Human protein_coding chr9:131873617 chr9:131873617 . . 0 21 hm5C_associated_SNPs_131427 0 0 0 0 0 Nucleus 0 0.50023164398894 0.852982759475708 0.000463287977880533 hm5C_site_51485 DeepMRMD:0.852982759475708;iRNA_m5C:0.000463287977880533 51486 chr19 7832480 7832480 1 + T C LIHC 7832480 + 7832460 7832500 41 ACCTAAATCAGGAAGGCACGTGGCAATGGGTGGACGGCTCA ACCTAAATCAGGAAGGCACGCGGCAATGGGTGGACGGCTCA Direct Gain 0 0.948396594746534 0 0.206738531589508 prediction 0.896793189493069 Functional Gain - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7832480 chr19:7832480 nonsynonymous SNV 0.047 3 21 hm5C_associated_SNPs_131428 0 0 0 0 2 exosome 0 0.500231643921092 0 0.000463287842184856 hm5C_site_51486 DeepMRMD:0;iRNA_m5C:0.000463287842184856 51487 chr16 11018622 11018622 1 + T C rs1139564 11018622 + 11018602 11018642 41 CTTAGCAGGGAAACAGCTAATGGGACACTAATGGGGCGGTG CTTAGCAGGGAAACAGCTAACGGGACACTAATGGGGCGGTG Direct Gain 0 0.948388341037685 0 0.884210169315338 prediction 0.89677668207537 Functional Gain - CIITA ENSG00000179583 UTR3 Human protein_coding chr16:11018622 chr16:11018622 . . 0 21 hm5C_associated_SNPs_131429 1 0 0 0 0 Nucleus 0 0.500231643921092 0.768420338630676 0.000463287842184856 hm5C_site_51487 DeepMRMD:0.768420338630676;iRNA_m5C:0.000463287842184856 SCID due to absent class II HLA antigens SCID due to absent class II HLA antigens 51488 chr21 47349884 47349884 1 + C G BLCA 47349884 - 47349864 47349904 41 AAAGCGGGGTTGGTCTGTCCGAGGGGAGGAAAGGGGGTTTG AAAGCGGGGTTGGTCTGTCCCAGGGGAGGAAAGGGGGTTTG Direct Gain 0 0.948376254616214 0 0.852653384208679 prediction 0.896752509232428 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47349884 chr21:47349884 synonymous SNV . 0 21 hm5C_associated_SNPs_131430 0 0 0 0 0 nucleoplasm 0 0.500231643920325 0.705306768417358 0.000463287840650972 hm5C_site_51488 DeepMRMD:0.705306768417358;iRNA_m5C:0.000463287840650972 51489 chr18 12325489 12325489 1 + G C STAD 12325489 + 12325469 12325509 41 CCTGGTGTCCGCCACCATGAGTGGGGTCACCACCTCGCTGC CCTGGTGTCCGCCACCATGACTGGGGTCACCACCTCGCTGC Direct Gain 0 0.948366052949039 0 0.573653101921082 prediction 0.896732105898077 Functional Gain - TUBB6 ENSG00000176014 CDS Human protein_coding chr18:12325489 chr18:12325489 nonsynonymous SNV 0.988 2 21 hm5C_associated_SNPs_131431 0 0 1 0 0 Endoplasmic reticulum 0 0.500229900820499 0.147306203842164 0.000459801640997348 hm5C_site_51489 DeepMRMD:0.147306203842164;iRNA_m5C:0.000459801640997348 51490 chr3 49842183 49842183 1 + A C KIRP 49842183 + 49842163 49842203 41 CTGCCTGAGACAGGGAGTGAAGGGGGTGACGGAGGTGGGCA CTGCCTGAGACAGGGAGTGACGGGGGTGACGGAGGTGGGCA Direct Gain 0 0.948320662501695 0 0.917752802371979 prediction 0.896641325003389 Functional Gain - FAM212A ENSG00000185614 CDS Human protein_coding chr3:49842183 chr3:49842183 nonsynonymous SNV 0.028 4 21 hm5C_associated_SNPs_131432 0 0 0 0 0 exosome 0 0.500231643922223 0.835505604743958 0.000463287844445048 hm5C_site_51490 DeepMRMD:0.835505604743958;iRNA_m5C:0.000463287844445048 51491 chr2 133403647 133403647 1 + T C rs139508764 133403647 + 133403627 133403667 41 TGCCGAGAAGAGGGCTAATTTGAGGAACAGGATGGTGGTGC TGCCGAGAAGAGGGCTAATTCGAGGAACAGGATGGTGGTGC Direct Gain 0 0.948308766923123 0 0.915763735771179 prediction 0.896617533846246 Functional Gain - LYPD1 ENSG00000150551 CDS Human protein_coding chr2:133403647 chr2:133403647 nonsynonymous SNV 0.890 1 21 hm5C_associated_SNPs_131433 0 0 0 0 0 Nucleus 0 0.500231643921093 0.831527471542358 0.000463287842185078 hm5C_site_51491 DeepMRMD:0.831527471542358;iRNA_m5C:0.000463287842185078 51492 chr1 170501403 170501403 1 + G C BRCA 170501403 + 170501383 170501423 41 GGATTCTCTGAGGAGGAACTGAGGAGACTAAAGCAGACTAA GGATTCTCTGAGGAGGAACTCAGGAGACTAAAGCAGACTAA Direct Gain 0 0.948305418293932 0 0.934306740760803 prediction 0.896610836587865 Functional Gain - GORAB ENSG00000120370 CDS Human protein_coding chr1:170501403 chr1:170501403 synonymous SNV . 0 21 hm5C_associated_SNPs_131434 0 0 0 0 1 Cytosol 0 0.500231643921092 0.868613481521606 0.000463287842184856 hm5C_site_51492 DeepMRMD:0.868613481521606;iRNA_m5C:0.000463287842184856 51493 chr16 30990652 30990652 1 + C G STAD 30990652 - 30990632 30990672 41 CCTGCGGCGGTGTGGCTGGAGGGGGCTCCGGGGCTGGCACC CCTGCGGCGGTGTGGCTGGACGGGGCTCCGGGGCTGGCACC Direct Gain 0 0.948304150651225 0 0.899543344974518 prediction 0.896608301302451 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30990652 chr16:30990652 nonsynonymous SNV 0.319 2 21 hm5C_associated_SNPs_131435 0 0 0 0 0 Cytosol 0 0.500231643921093 0.799086689949036 0.0004632878421853 hm5C_site_51493 DeepMRMD:0.799086689949036;iRNA_m5C:0.0004632878421853 51494 chr3 9739416 9739416 1 + C G rs181468125 9739416 - 9739396 9739436 41 TCTGTGGAGAGAGAGGATCCGGGCAGGGGATGGTCCACTGA TCTGTGGAGAGAGAGGATCCCGGCAGGGGATGGTCCACTGA Direct Gain 0 0.94830413127886 0 0.426953464746475 prediction 0.896608262557719 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9739416 chr3:9739416 synonymous SNV . 0 21 hm5C_associated_SNPs_131436 0 0 0 0 0 Ribosome 0 0.500231710512201 0 0.000463421024401223 hm5C_site_51494 DeepMRMD:0;iRNA_m5C:0.000463421024401223 51495 chr15 39542962 39542962 1 + T C rs78280861 39542962 + 39542942 39542982 41 GGCTCCATTTCCCTTTGAAATGGGATGGGAGAAAGGGGCAG GGCTCCATTTCCCTTTGAAACGGGATGGGAGAAAGGGGCAG Direct Gain 0 0.948291021098906 0 0.855083107948303 prediction 0.896582042197811 Functional Gain - C15orf54 ENSG00000259345 ncRNA_intronic Human lincRNA chr15:39542962 chr15:39542962 . . 0 21 hm5C_associated_SNPs_131437 0 0 0 0 0 unknown 0 0.500231584024673 0.710166215896606 0.000463168049346319 hm5C_site_51495 DeepMRMD:0.710166215896606;iRNA_m5C:0.000463168049346319 51496 chr11 1266089 1266089 1 + C G rs571169815 1266089 - 1266069 1266109 41 TGGTGGTGGTGGTCAGCACTGTGGGGGTGTGGGTGGTCCCC TGGTGGTGGTGGTCAGCACTCTGGGGGTGTGGGTGGTCCCC Direct Gain 0 0.948286291398595 0 0.932451665401459 prediction 0.89657258279719 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1266089 chr11:1266089 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_131438 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.864903330802918 0.000463287842184856 hm5C_site_51496 DeepMRMD:0.864903330802918;iRNA_m5C:0.000463287842184856 51497 chr11 119004999 119004999 1 + G C LUSC 119004999 + 119004979 119005019 41 AAGAGGAGGGCAAGGGTAGCGAAGGGACAGCCCTCTCAGCC AAGAGGAGGGCAAGGGTAGCCAAGGGACAGCCCTCTCAGCC Direct Gain 0 0.948274754010178 0 0.937854647636414 prediction 0.896549508020357 Functional Gain - HINFP ENSG00000172273 CDS Human protein_coding chr11:119004999 chr11:119004999 nonsynonymous SNV 0.008 1 21 hm5C_associated_SNPs_131439 0 0 0 0 0 Cytosol 0 0.500231643921093 0.875709295272828 0.000463287842186855 hm5C_site_51497 DeepMRMD:0.875709295272828;iRNA_m5C:0.000463287842186855 51498 chr19 52095083 52095083 1 + A G rs4802820 52095083 - 52095063 52095103 41 CTTGCAGTGAGCTGAGATCGTGCCACTGCACTCCAGAGCCT CTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGAGCCT Direct Gain 0 0.948254119605418 0 0.528187930583954 prediction 0.896508239210837 Functional Gain - LINC01530 ENSG00000167765 UTR3 Human other chr19:52095083 chr19:52095083 . . 0 21 hm5C_associated_SNPs_131440 0 0 0 0 0 unknown 0 0.500233754038447 0.0563758611679079 0.00046750807689433 hm5C_site_51498 DeepMRMD:0.0563758611679079;iRNA_m5C:0.00046750807689433 51499 chr17 45914289 45914289 1 + G C OV 45914289 + 45914269 45914309 41 CTTCTGCCACTCCTGCGCAAGGGGAGGAGACAGTCCCTGAG CTTCTGCCACTCCTGCGCAACGGGAGGAGACAGTCCCTGAG Direct Gain 0 0.94824477508078 0 0.909185886383057 prediction 0.89648955016156 Functional Gain - LRRC46 ENSG00000141294 CDS Human protein_coding chr17:45914289 chr17:45914289 nonsynonymous SNV 0.011 0 21 hm5C_associated_SNPs_131441 0 0 0 0 0 exosome 0 0.500231643910528 0.818371772766114 0.000463287821055536 hm5C_site_51499 DeepMRMD:0.818371772766114;iRNA_m5C:0.000463287821055536 51500 chrX 144904318 144904318 1 + G C UCEC 144904318 + 144904298 144904338 41 AACAACAAGCTTGAGATATTGAGGGAGGACACCTTCCTAGG AACAACAAGCTTGAGATATTCAGGGAGGACACCTTCCTAGG Direct Gain 0 0.948220754874225 0 0.975875616073608 prediction 0.896441509748449 Functional Gain - SLITRK2 ENSG00000185985 CDS Human protein_coding chrX:144904318 chrX:144904318 nonsynonymous SNV 0.929 2 21 hm5C_associated_SNPs_131442 0 0 0 0 0 Cytosol 0 0.500231643921092 0.951751232147216 0.000463287842184856 hm5C_site_51500 DeepMRMD:0.951751232147216;iRNA_m5C:0.000463287842184856 51501 chr1 6649173 6649173 1 + C G rs1804904 6649173 - 6649153 6649193 41 TCTGCACACAGTCTCTGGCCGGGGAGCTGGGAGGCCAGGCC TCTGCACACAGTCTCTGGCCCGGGAGCTGGGAGGCCAGGCC Direct Gain 0 0.948211716576198 0 0.779192328453064 prediction 0.896423433152397 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6649173 chr1:6649173 synonymous SNV . 0 21 hm5C_associated_SNPs_131443 0 0 0 0 0 Nucleus 0 0.500231643921092 0.558384656906128 0.000463287842184856 hm5C_site_51501 DeepMRMD:0.558384656906128;iRNA_m5C:0.000463287842184856 51502 chr1 111778692 111778692 1 + T C rs144428915 111778692 + 111778672 111778712 41 CCTTTGACTTCCATGGGTCTTGGGAAAAGCCCCTTATCACT CCTTTGACTTCCATGGGTCTCGGGAAAAGCCCCTTATCACT Direct Gain 0 0.948206578079379 0 0.961339235305786 prediction 0.896413156158757 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111778692 chr1:111778692 nonsynonymous SNV 0.998 3 21 hm5C_associated_SNPs_131444 0 0 0 0 2 exosome 0 0.500231643921092 0.922678470611572 0.000463287842184856 hm5C_site_51502 DeepMRMD:0.922678470611572;iRNA_m5C:0.000463287842184856 51503 chrX 152128370 152128370 1 + A G STAD 152128370 - 152128350 152128390 41 GTTCTGCTGTTCTGGGGTACTGGGATCTGCAGGTTGCTGAG GTTCTGCTGTTCTGGGGTACCGGGATCTGCAGGTTGCTGAG Direct Gain 0 0.948196537720494 0 0.926450133323669 prediction 0.896393075440988 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152128370 chrX:152128370 nonsynonymous SNV 0.004 2 21 hm5C_associated_SNPs_131445 0 0 0 0 0 chromatin 0 0.500231644645363 0.852900266647338 0.000463289290725921 hm5C_site_51503 DeepMRMD:0.852900266647338;iRNA_m5C:0.000463289290725921 51504 chr9 136321236 136321236 1 + T C STAD 136321236 + 136321216 136321256 41 GCCAACAGGAACCATTGACATGCGAGGCCCAGGGCAGGCAG GCCAACAGGAACCATTGACACGCGAGGCCCAGGGCAGGCAG Direct Gain 0 0.948180104303815 0 0.93363744020462 prediction 0.89636020860763 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136321236 chr9:136321236 nonsynonymous SNV 0.947 1 21 hm5C_associated_SNPs_131446 0 0 0 0 1 nucleus 0 0.50023164523139 0.86727488040924 0.000463290462780153 hm5C_site_51504 DeepMRMD:0.86727488040924;iRNA_m5C:0.000463290462780153 51505 chr11 17631681 17631681 1 + C G rs546247260 17631681 - 17631661 17631701 41 CTTGGTCATGAGCGGGAAGCGAGGGGCAGGGGGCGACCGGG CTTGGTCATGAGCGGGAAGCCAGGGGCAGGGGGCGACCGGG Direct Gain 0 0.948174635008219 0 0.917106628417969 prediction 0.896349270016438 Functional Gain - OTOG ENSG00000188162 CDS Human protein_coding chr11:17631681 chr11:17631681 nonsynonymous SNV 0.102 0 21 hm5C_associated_SNPs_131447 0 0 0 0 0 exosome 0 0.500231643921092 0.834213256835938 0.000463287842184856 hm5C_site_51505 DeepMRMD:0.834213256835938;iRNA_m5C:0.000463287842184856 51506 chr3 179041057 179041057 1 + G C rs142375387 179041057 + 179041037 179041077 41 GCCTCTGCGTGGGCCGGCCGGGAGGGCCTCGGGGGACTGAC GCCTCTGCGTGGGCCGGCCGCGAGGGCCTCGGGGGACTGAC Direct Gain 0 0.948146129305055 0 0.905765652656555 prediction 0.896292258610111 Functional Gain - ZNF639 ENSG00000121864 UTR5 Human protein_coding chr3:179041057 chr3:179041057 . . 0 21 hm5C_associated_SNPs_131448 0 0 1 0 1 Nucleus 0 0.500231648324755 0.81153130531311 0.000463296649509504 hm5C_site_51506 DeepMRMD:0.81153130531311;iRNA_m5C:0.000463296649509504 51507 chr19 53554240 53554240 1 + T C rs7259688 53554240 + 53554220 53554260 41 ATCTCTTGAGGAGGGAAATATTAGGGTAGGCAGGTAGGCAG ATCTCTTGAGGAGGGAAATACTAGGGTAGGCAGGTAGGCAG Direct Gain 0 0.948144794503799 0 0.702285766601562 prediction 0.896289589007597 Functional Gain - ERVV-2 ENSG00000268964 UTR3 Human protein_coding chr19:53554240 chr19:53554240 . . 0 21 hm5C_associated_SNPs_131449 0 0 0 0 0 exosome 0 0.500231643921089 0.404571533203124 0.000463287842178195 hm5C_site_51507 DeepMRMD:0.404571533203124;iRNA_m5C:0.000463287842178195 51508 chr3 128615300 128615300 1 + G C KIRC 128615300 + 128615280 128615320 41 GGATCATCTTGGCTGGCACTGAGGAGCAGAAAGCCAAATAC GGATCATCTTGGCTGGCACTCAGGAGCAGAAAGCCAAATAC Direct Gain 0 0.948139848491998 0 0.943816661834717 prediction 0.896279696983995 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128615300 chr3:128615300 nonsynonymous SNV 0.569 2 21 hm5C_associated_SNPs_131450 0 0 1 0 2 Endoplasmic reticulum 0 0.500231643822638 0.887633323669434 0.000463287645276367 hm5C_site_51508 DeepMRMD:0.887633323669434;iRNA_m5C:0.000463287645276367 51509 chr12 124104045 124104045 1 + G C LUAD 124104045 + 124104025 124104065 41 GCCCAAGATGCCAGAATTGAGAGGAAAGCAGTTTCCAGATT GCCCAAGATGCCAGAATTGACAGGAAAGCAGTTTCCAGATT Direct Gain 0 0.948126811549187 0 0.574387490749359 prediction 0.896253623098373 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124104045 chr12:124104045 nonsynonymous SNV 0.991 1 21 hm5C_associated_SNPs_131451 0 0 1 0 2 Nucleus 0 0.500231643914189 0.148774981498718 0.000463287828377013 hm5C_site_51509 DeepMRMD:0.148774981498718;iRNA_m5C:0.000463287828377013 51510 chr1 146649722 146649722 1 + G C rs587748559 146649722 + 146649702 146649742 41 CGCCGCCCAGCGCTGTTCCCGGGCGTGGCGCTGCTTCTCGC CGCCGCCCAGCGCTGTTCCCCGGCGTGGCGCTGCTTCTCGC Direct Gain 0 0.948122459959866 0 0.818597614765167 prediction 0.896244919919732 Functional Gain - PDIA3P1 ENSG00000180867 ncRNA_exonic Human processed_pseudogene chr1:146649722 chr1:146649722 . . 0 21 hm5C_associated_SNPs_131452 0 0 0 0 0 unknown 0 0.500231643921093 0.637195229530334 0.000463287842185078 hm5C_site_51510 DeepMRMD:0.637195229530334;iRNA_m5C:0.000463287842185078 51511 chr2 183580986 183580986 1 + C G rs528051659 183580986 - 183580966 183581006 41 GCCGGTCTCCACGGCGAGCCGGGGCGGGGCCTGGCGCGGAG GCCGGTCTCCACGGCGAGCCCGGGCGGGGCCTGGCGCGGAG Direct Gain 0 0.948118910358131 0 0.882916688919067 prediction 0.896237820716261 Functional Gain - DNAJC10 ENSG00000077232 upstream Human protein_coding chr2:183580986 chr2:183580986 . . 0 21 hm5C_associated_SNPs_131453 0 0 0 0 0 Ribosome 0 0.500231643921092 0.765833377838134 0.000463287842184856 hm5C_site_51511 DeepMRMD:0.765833377838134;iRNA_m5C:0.000463287842184856 51512 chr16 3117477 3117477 1 + G C rs539684284 3117477 + 3117457 3117497 41 GGGTCTCAGCGTGTGACACTGAGGACACTGTGGGACACCTG GGGTCTCAGCGTGTGACACTCAGGACACTGTGGGACACCTG Direct Gain 0 0.948113220531298 0 0.925330281257629 prediction 0.896226441062596 Functional Gain - IL32 ENSG00000008517 CDS Human protein_coding chr16:3117477 chr16:3117477 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_131454 0 0 1 0 1 Ribosome 0 0.500231609372976 0.850660562515258 0.000463218745951233 hm5C_site_51512 DeepMRMD:0.850660562515258;iRNA_m5C:0.000463218745951233 51513 chr14 72399553 72399553 1 + C G rs542763748 72399553 - 72399533 72399573 41 CTGGAGAAGCCCAGGGAACCGGGGACCGGCAGCCTCTTGGG CTGGAGAAGCCCAGGGAACCCGGGACCGGCAGCCTCTTGGG Direct Gain 0 0.948111956520351 0 0.919811964035034 prediction 0.896223913040702 Functional Gain - RGS6 ENSG00000182732 UTR5 Human protein_coding chr14:72399553 chr14:72399553 . . 0 21 hm5C_associated_SNPs_131455 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.839623928070068 0.000463287842184856 hm5C_site_51513 DeepMRMD:0.839623928070068;iRNA_m5C:0.000463287842184856 51514 chr3 183368873 183368873 1 + G C BLCA 183368873 + 183368853 183368893 41 GTCTATCGTGCCGTTGATCTGAGAAGACCACTGTTACACGA GTCTATCGTGCCGTTGATCTCAGAAGACCACTGTTACACGA Direct Gain 0 0.948110300180858 0 0.804111003875732 prediction 0.896220600361715 Functional Gain - KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183368873 chr3:183368873 synonymous SNV . 0 21 hm5C_associated_SNPs_131456 0 0 1 0 0 Ribosome 0 0.5002317577986 0.608222007751464 0.000463515597200814 hm5C_site_51514 DeepMRMD:0.608222007751464;iRNA_m5C:0.000463515597200814 51515 chrX 100880053 100880053 1 + T C LUSC 100880053 + 100880033 100880073 41 TATTGCATTTATAGACTGACTAGGGGAAGAAAACAGAACAA TATTGCATTTATAGACTGACCAGGGGAAGAAAACAGAACAA Direct Gain 0 0.948093199454788 0 0.818978667259216 prediction 0.896186398909576 Functional Gain - ARMCX3 ENSG00000102401 CDS Human protein_coding chrX:100880053 chrX:100880053 synonymous SNV . 0 21 hm5C_associated_SNPs_131457 0 0 1 0 0 Endoplasmic reticulum 0 0.500231643937198 0.637957334518432 0.000463287874396423 hm5C_site_51515 DeepMRMD:0.637957334518432;iRNA_m5C:0.000463287874396423 51516 chr1 28087289 28087289 1 + T C rs531655660 28087289 + 28087269 28087309 41 AGACTGCATGCTTGAGTGTTTGGGATTTCAAGCTCGCTCTC AGACTGCATGCTTGAGTGTTCGGGATTTCAAGCTCGCTCTC Direct Gain 0 0.948052517901952 0 0.846511721611023 prediction 0.896105035803904 Functional Gain - FAM76A ENSG00000009780 UTR3 Human protein_coding chr1:28087289 chr1:28087289 . . 0 21 hm5C_associated_SNPs_131458 0 0 1 1 0 chromatin 0 0.500231643620429 0.693023443222046 0.000463287240857202 hm5C_site_51516 DeepMRMD:0.693023443222046;iRNA_m5C:0.000463287240857202 51517 chr3 39544313 39544313 1 + T G MESO 39544313 - 39544293 39544333 41 GGCTGGCGCCTGGCCCTCTGAGGGGGCTGCTGCGCGGCTGT GGCTGGCGCCTGGCCCTCTGCGGGGGCTGCTGCGCGGCTGT Direct Gain 0 0.947997934103179 0 0.979658126831055 prediction 0.895995868206358 Functional Gain - MOBP ENSG00000168314 CDS Human protein_coding chr3:39544313 chr3:39544313 nonsynonymous SNV 0.460 1 21 hm5C_associated_SNPs_131459 0 0 0 0 0 exosome 0 0.500227349207013 0.95931625366211 0.000454698414025678 hm5C_site_51517 DeepMRMD:0.95931625366211;iRNA_m5C:0.000454698414025678 51518 chr1 117307886 117307886 1 + G C rs556911234 117307886 + 117307866 117307906 41 GGCCAACCCGGGGTCACTGTGGGGGGCACAGATGAGGGTGT GGCCAACCCGGGGTCACTGTCGGGGGCACAGATGAGGGTGT Direct Gain 0 0.947979336094414 0 0.971214830875397 prediction 0.895958672188829 Functional Gain - CD2 ENSG00000116824 intronic Human protein_coding chr1:117307886 chr1:117307886 . . 0 21 hm5C_associated_SNPs_131460 0 0 0 0 0 exosome 0 0.500231643921092 0.942429661750794 0.000463287842184856 hm5C_site_51518 DeepMRMD:0.942429661750794;iRNA_m5C:0.000463287842184856 51519 chr9 139252878 139252878 1 + C G rs3812549 139252878 - 139252858 139252898 41 GGGGCAGAAGGGAGGAAGCTGAGGGCCATGGGGGCCAGCCC GGGGCAGAAGGGAGGAAGCTCAGGGCCATGGGGGCCAGCCC Direct Gain 0 0.947978111854524 0 0.948595821857452 prediction 0.895956223709047 Functional Gain - GPSM1 ENSG00000160360 UTR3 Human protein_coding chr9:139252878 chr9:139252878 . . 0 21 hm5C_associated_SNPs_131461 0 0 0 0 0 Cytosol 0 0.50023164392109 0.897191643714904 0.000463287842180415 hm5C_site_51519 DeepMRMD:0.897191643714904;iRNA_m5C:0.000463287842180415 51520 chr1 152671565 152671565 1 + G C LUAD 152671565 + 152671545 152671585 41 TGGGGGCTGCTGCAGCTCTGGGGGTGGCGGCTGCTGCCTGA TGGGGGCTGCTGCAGCTCTGCGGGTGGCGGCTGCTGCCTGA Direct Gain 0 0.947968136716863 0 0.903831958770752 prediction 0.895936273433727 Functional Gain - LCE2A ENSG00000187173 CDS Human protein_coding chr1:152671565 chr1:152671565 nonsynonymous SNV 0.922 3 21 hm5C_associated_SNPs_131462 0 0 0 0 0 unknown 0 0.500232145744892 0.807663917541504 0.00046429148978433 hm5C_site_51520 DeepMRMD:0.807663917541504;iRNA_m5C:0.00046429148978433 51521 chr2 37319112 37319112 1 + T C KIRC 37319112 + 37319092 37319132 41 AACGGAAAGCAGAGGAAAAATTGGAAAGCTACAGAAAAAAG AACGGAAAGCAGAGGAAAAACTGGAAAGCTACAGAAAAAAG Direct Gain 0 0.947898461168585 0 0.467208683490753 prediction 0.89579692233717 Functional Gain - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319112 chr2:37319112 synonymous SNV . 0 21 hm5C_associated_SNPs_131463 0 0 1 0 2 chromatin 0 0.500232125708164 0 0.000464251416327999 hm5C_site_51521 DeepMRMD:0;iRNA_m5C:0.000464251416327999 51522 chr19 30934639 30934639 1 + A G GBM 30934639 - 30934619 30934659 41 GGGATGCGGGGGGCTTCTCCTCGGGGTTGGGCCGGGGATGG GGGATGCGGGGGGCTTCTCCCCGGGGTTGGGCCGGGGATGG Direct Gain 0 0.947890096125276 0 0.918444991111755 prediction 0.895780192250551 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934639 chr19:30934639 nonsynonymous SNV 0.914 4 21 hm5C_associated_SNPs_131464 0 0 0 0 0 exosome 0 0.500231643983942 0.83688998222351 0.000463287967883641 hm5C_site_51522 DeepMRMD:0.83688998222351;iRNA_m5C:0.000463287967883641 51523 chr14 90528592 90528592 1 + G C BLCA 90528592 + 90528572 90528612 41 GGGGCCCGGGCCACCTGAACGAGGACAACGCGCGCTTTCTG GGGGCCCGGGCCACCTGAACCAGGACAACGCGCGCTTTCTG Direct Gain 0 0.947884949008433 0 0.965559244155884 prediction 0.895769898016865 Functional Gain - KCNK13 ENSG00000152315 CDS Human protein_coding chr14:90528592 chr14:90528592 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131465 0 0 0 0 0 exosome 0 0.500231643921054 0.931118488311768 0.000463287842108473 hm5C_site_51523 DeepMRMD:0.931118488311768;iRNA_m5C:0.000463287842108473 51524 chr4 5758088 5758088 1 + A G ESCA 5758088 - 5758068 5758108 41 CCCCACAGAGGCCATGTACCTGGCAGAGTGCAACCACAGCC CCCCACAGAGGCCATGTACCCGGCAGAGTGCAACCACAGCC Direct Gain 0 0.947871592123852 0 0.700750589370728 prediction 0.895743184247704 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5758088 chr4:5758088 nonsynonymous SNV 0.774 2 21 hm5C_associated_SNPs_131466 0 0 0 0 0 Nucleus 0 0.500231643921092 0.401501178741456 0.000463287842184856 hm5C_site_51524 DeepMRMD:0.401501178741456;iRNA_m5C:0.000463287842184856 51525 chr14 24572815 24572815 1 + A C UCEC 24572815 + 24572795 24572835 41 GCTGAGCATGGAAGGGCGCAAGGGGGCCCAGCTGCCCCGTA GCTGAGCATGGAAGGGCGCACGGGGGCCCAGCTGCCCCGTA Direct Gain 0 0.947865567382286 0 0.892619848251343 prediction 0.895731134764572 Functional Gain - PCK2 ENSG00000100889 CDS Human protein_coding chr14:24572815 chr14:24572815 nonsynonymous SNV 0.963 0 21 hm5C_associated_SNPs_131467 0 0 0 0 1 Endoplasmic reticulum 0 0.500231643921093 0.785239696502686 0.000463287842186411 hm5C_site_51525 DeepMRMD:0.785239696502686;iRNA_m5C:0.000463287842186411 51526 chr11 89028354 89028354 1 + A C STAD 89028354 + 89028334 89028374 41 ATTAAGTCCTATTTGGAACAAGCGAGTCGGATCTGGTCATG ATTAAGTCCTATTTGGAACACGCGAGTCGGATCTGGTCATG Direct Gain 0 0.947862120085209 0 0.576077342033386 prediction 0.895724240170418 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:89028354 chr11:89028354 nonsynonymous SNV 0.957 5 21 hm5C_associated_SNPs_131468 0 0 0 0 1 unknown 0 0.500231579492367 0.152154684066772 0.000463158984733925 hm5C_site_51526 DeepMRMD:0.152154684066772;iRNA_m5C:0.000463158984733925 51527 chr7 150773144 150773144 1 + C G LUAD 150773144 - 150773124 150773164 41 GCCCAGAGCAGGGCCAGGCAGAGCAGCTGCAGGGCCGTGAA GCCCAGAGCAGGGCCAGGCACAGCAGCTGCAGGGCCGTGAA Direct Gain 0 0.947861031132375 0 0.617579817771912 prediction 0.895722062264751 Functional Gain - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150773144 chr7:150773144 synonymous SNV . 0 21 hm5C_associated_SNPs_131469 0 0 0 0 1 Ribosome 0 0.500231643921092 0.235159635543824 0.000463287842184856 hm5C_site_51527 DeepMRMD:0.235159635543824;iRNA_m5C:0.000463287842184856 51528 chr19 5661656 5661656 1 + A C UCEC 5661656 + 5661636 5661676 41 AGCGGCTGGAGCGGGAGCGCATGGAGCGGGAACGGCTGGAG AGCGGCTGGAGCGGGAGCGCCTGGAGCGGGAACGGCTGGAG Direct Gain 0 0.947861029859674 0 0.905912280082703 prediction 0.895722059719348 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5661656 chr19:5661656 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_131470 0 0 1 0 0 chromatin 0 0.500231643921154 0.811824560165406 0.000463287842307647 hm5C_site_51528 DeepMRMD:0.811824560165406;iRNA_m5C:0.000463287842307647 51529 chr14 51027013 51027013 1 + T C rs146613929 51027013 + 51026993 51027033 41 AACCGCAGGGACAGAAACAGTTGGGGTGAGTAGCAAATGAG AACCGCAGGGACAGAAACAGCTGGGGTGAGTAGCAAATGAG Direct Gain 0 0.947860790857648 0 0.490579038858414 prediction 0.895721581715296 Functional Gain - ATL1 ENSG00000198513 CDS Human protein_coding chr14:51027013 chr14:51027013 synonymous SNV . 0 21 hm5C_associated_SNPs_131471 0 0 0 0 1 chromatin 0 0.500231643921092 0 0.000463287842184856 hm5C_site_51529 DeepMRMD:0;iRNA_m5C:0.000463287842184856 51530 chr19 42814223 42814223 1 + C G STAD 42814223 - 42814203 42814243 41 ATCCTGAATCAGGTTCCTCCGGGGGAAGGCCTGTGGCAAAC ATCCTGAATCAGGTTCCTCCCGGGGAAGGCCTGTGGCAAAC Direct Gain 0 0.947847234766419 0 0.912856817245483 prediction 0.895694469532838 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814223 chr19:42814223 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_131472 0 0 0 0 0 exosome 0 0.500231643921092 0.825713634490966 0.000463287842184856 hm5C_site_51530 DeepMRMD:0.825713634490966;iRNA_m5C:0.000463287842184856 51531 chr3 44283855 44283855 1 + A C UCEC 44283855 + 44283835 44283875 41 CGCGAGGCCTAGAAGCAGCAAAGGAGGCTGAACTCCCCTTG CGCGAGGCCTAGAAGCAGCACAGGAGGCTGAACTCCCCTTG Direct Gain 0 0.947832401006175 0 0.659207701683044 prediction 0.895664802012349 Functional Gain - TOPAZ1 ENSG00000173769 CDS Human protein_coding chr3:44283855 chr3:44283855 nonsynonymous SNV 0.047 1 21 hm5C_associated_SNPs_131473 0 0 0 0 1 exosome 0 0.500231644062661 0.318415403366088 0.000463288125321037 hm5C_site_51531 DeepMRMD:0.318415403366088;iRNA_m5C:0.000463288125321037 51532 chr4 17625807 17625807 1 + T C rs80313520 17625807 + 17625787 17625827 41 GTAGCCTGAGAATCAGGAGATGGGAGTTTTAGTCGTAGGCC GTAGCCTGAGAATCAGGAGACGGGAGTTTTAGTCGTAGGCC Direct Gain 0 0.947829460004542 0 0.877391695976257 prediction 0.895658920009085 Functional Gain - MED28 ENSG00000118579 UTR3 Human protein_coding chr4:17625807 chr4:17625807 . . 0 21 hm5C_associated_SNPs_131474 0 0 1 0 0 Ribosome 0 0.500231643921092 0.754783391952514 0.000463287842184856 hm5C_site_51532 DeepMRMD:0.754783391952514;iRNA_m5C:0.000463287842184856 51533 chr6 159654551 159654551 1 + C G rs370434 159654551 - 159654531 159654571 41 GGGAGGAGGGGGCTGCTGTTGTGGGGCCCGGCCGGGTGTCA GGGAGGAGGGGGCTGCTGTTCTGGGGCCCGGCCGGGTGTCA Direct Gain 0 0.947828666356312 0 0.924544930458069 prediction 0.895657332712625 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159654551 chr6:159654551 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_131475 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.849089860916138 0.000463287842184856 hm5C_site_51533 DeepMRMD:0.849089860916138;iRNA_m5C:0.000463287842184856 51534 chrX 102864134 102864134 1 + A C OV 102864134 + 102864114 102864154 41 AGACAGAATGCGAGGGAAAGAGAGAGGATGAGGGAGAGCCA AGACAGAATGCGAGGGAAAGCGAGAGGATGAGGGAGAGCCA Direct Gain 0 0.947828300344792 0 0.846172213554382 prediction 0.895656600689584 Functional Gain - TCEAL3 ENSG00000196507 CDS Human protein_coding chrX:102864134 chrX:102864134 synonymous SNV . 0 21 hm5C_associated_SNPs_131476 0 0 1 0 0 exosome 0 0.500231643916656 0.692344427108764 0.000463287833312842 hm5C_site_51534 DeepMRMD:0.692344427108764;iRNA_m5C:0.000463287833312842 51535 chr12 48535133 48535133 1 + G C LUSC 48535133 + 48535113 48535153 41 GCTATGTTGGGGGCTGGACTGGCCAAGGTGGCTCTAAACTT GCTATGTTGGGGGCTGGACTCGCCAAGGTGGCTCTAAACTT Direct Gain 0 0.947812945936646 0 0.827290534973145 prediction 0.895625891873292 Functional Gain - PFKM ENSG00000152556 CDS Human protein_coding chr12:48535133 chr12:48535133 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131477 0 0 1 0 2 Nucleus 0 0.500231651464539 0.65458106994629 0.000463302929078591 hm5C_site_51535 DeepMRMD:0.65458106994629;iRNA_m5C:0.000463302929078591 51536 chr12 20523141 20523141 1 + A G CESC 20523141 - 20523121 20523161 41 AGGGCAGGGAGGTCCTCCGATGGGACTTGCTGCTGCAGCCG AGGGCAGGGAGGTCCTCCGACGGGACTTGCTGCTGCAGCCG Direct Gain 0 0.947805960691464 0 0.897435426712036 prediction 0.895611921382929 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20523141 chr12:20523141 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_131478 0 0 0 0 0 Nucleus 0 0.500231643932039 0.794870853424072 0.000463287864078676 hm5C_site_51536 DeepMRMD:0.794870853424072;iRNA_m5C:0.000463287864078676 51537 chr10 72327182 72327182 1 + T C rs12257031 72327182 + 72327162 72327202 41 ACTTCAGGGAGCCCCTCTCATGGGGAGGAAAGAGCTTCCAG ACTTCAGGGAGCCCCTCTCACGGGGAGGAAAGAGCTTCCAG Direct Gain 0 0.947799240134866 0 0.955985426902771 prediction 0.895598480269732 Functional Gain - PALD1 ENSG00000107719 UTR3 Human protein_coding chr10:72327182 chr10:72327182 . . 0 21 hm5C_associated_SNPs_131479 0 0 0 0 0 Ribosome 0 0.500231643921092 0.911970853805542 0.000463287842184856 hm5C_site_51537 DeepMRMD:0.911970853805542;iRNA_m5C:0.000463287842184856 51538 chr5 140573607 140573607 1 + A G rs2740585 140573607 - 140573587 140573627 41 GCGAGGGGCAGGTGCGGGTCTTGGGGCGGCAGCAGCGAGTA GCGAGGGGCAGGTGCGGGTCCTGGGGCGGCAGCAGCGAGTA Direct Gain 0 0.947792712803326 0 0.670519530773163 prediction 0.895585425606652 Functional Gain - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573607 chr5:140573607 synonymous SNV . 0 21 hm5C_associated_SNPs_131480 0 0 0 0 0 exosome 0 0.50023164392104 0.341039061546326 0.000463287842080717 hm5C_site_51538 DeepMRMD:0.341039061546326;iRNA_m5C:0.000463287842080717 51539 chr3 43389515 43389515 1 + T C UCEC 43389515 + 43389495 43389535 41 GGCCAGAGCAAGCCAAGCAATGCCAGTGGAGGGGTGGACAA GGCCAGAGCAAGCCAAGCAACGCCAGTGGAGGGGTGGACAA Direct Gain 0 0.947791670681123 0 0.716520547866821 prediction 0.895583341362245 Functional Gain - SNRK ENSG00000163788 CDS Human protein_coding chr3:43389515 chr3:43389515 synonymous SNV . 0 21 hm5C_associated_SNPs_131481 0 0 1 0 0 Cytosol 0 0.500231643921093 0.433041095733642 0.000463287842186633 hm5C_site_51539 DeepMRMD:0.433041095733642;iRNA_m5C:0.000463287842186633 51540 chr19 1258228 1258228 1 + C G rs146271397 1258228 - 1258208 1258248 41 CCGGGAAGGAGGGCTCGGAGGGGGGAACTCCCCAGCACCCA CCGGGAAGGAGGGCTCGGAGCGGGGAACTCCCCAGCACCCA Direct Gain 0 0.947774932086145 0 0.949610590934753 prediction 0.89554986417229 Functional Gain - MIDN ENSG00000167470 UTR3 Human protein_coding chr19:1258228 chr19:1258228 . . 0 21 hm5C_associated_SNPs_131482 0 0 0 0 0 chromatin 0 0.500231643921092 0.899221181869506 0.000463287842184856 hm5C_site_51540 DeepMRMD:0.899221181869506;iRNA_m5C:0.000463287842184856 51541 chr7 29725036 29725036 1 + G C rs574457365 29725036 + 29725016 29725056 41 GGCGCGGGAGACGAGGAGACGCGGAGAAGAAGGTGTCCCGG GGCGCGGGAGACGAGGAGACCCGGAGAAGAAGGTGTCCCGG Direct Gain 0 0.947763842129854 0 0.802014231681824 prediction 0.895527684259707 Functional Gain - DPY19L2P3;ZNRF2P2 ENSG00000227855 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:29725036 chr7:29725036 . . 0 21 hm5C_associated_SNPs_131483 0 0 0 0 0 unknown 0 0.500230957801489 0.604028463363648 0.000461915602978813 hm5C_site_51541 DeepMRMD:0.604028463363648;iRNA_m5C:0.000461915602978813 51542 chr19 49686092 49686092 1 + G C LUSC 49686092 + 49686072 49686112 41 CCTGACGTGGGGCATGTGCTGAGGATGCTGCTGGGGAAGAT CCTGACGTGGGGCATGTGCTCAGGATGCTGCTGGGGAAGAT Direct Gain 0 0.947738773515083 0 0.869439959526062 prediction 0.895477547030167 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49686092 chr19:49686092 synonymous SNV . 0 21 hm5C_associated_SNPs_131484 0 0 0 0 1 chromatin 0 0.500231645664121 0.738879919052124 0.000463291328242743 hm5C_site_51542 DeepMRMD:0.738879919052124;iRNA_m5C:0.000463291328242743 51543 chr19 50333414 50333414 1 + C G BLCA 50333414 - 50333394 50333434 41 CTGCTGAGAGAGTGGCACCTGAGGGTGCGGCGGGAGGCAGG CTGCTGAGAGAGTGGCACCTCAGGGTGCGGCGGGAGGCAGG Direct Gain 0 0.94767966964361 0 0.856495082378387 prediction 0.89535933928722 Functional Gain - MED25 ENSG00000104973 CDS Human protein_coding chr19:50333414 chr19:50333414 stopgain 0.242 0 21 hm5C_associated_SNPs_131485 0 0 0 0 0 chromatin 0 0.500231643924578 0.712990164756774 0.000463287849155281 hm5C_site_51543 DeepMRMD:0.712990164756774;iRNA_m5C:0.000463287849155281 51544 chr17 74139352 74139352 1 + C G rs577279119 74139352 - 74139332 74139372 41 GTGGCCAGGACCCCCTTCCTGAGGATCCCTGTCCTTCCTCG GTGGCCAGGACCCCCTTCCTCAGGATCCCTGTCCTTCCTCG Direct Gain 0 0.947679206773115 0 0.95197606086731 prediction 0.89535841354623 Functional Gain - RNF157-AS1 ENSG00000267128 ncRNA_exonic Human antisense chr17:74139352 chr17:74139352 . . 0 21 hm5C_associated_SNPs_131486 0 0 1 0 0 unknown 0 0.500231642436678 0.90395212173462 0.000463284873355452 hm5C_site_51544 DeepMRMD:0.90395212173462;iRNA_m5C:0.000463284873355452 51545 chr10 45938983 45938983 1 + C G CESC 45938983 - 45938963 45939003 41 ACGTCCCGGAGGCCCTACCTGAGGACTTGCGGCCCCGCATG ACGTCCCGGAGGCCCTACCTCAGGACTTGCGGCCCCGCATG Direct Gain 0 0.947671421388623 0 0.961125135421753 prediction 0.895342842777246 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938983 chr10:45938983 stopgain 0.975 1 21 hm5C_associated_SNPs_131487 0 0 0 0 0 Cytosol 0 0.500231648105415 0.922250270843506 0.000463296210829522 hm5C_site_51545 DeepMRMD:0.922250270843506;iRNA_m5C:0.000463296210829522 51546 chr11 73675980 73675980 1 + G C CESC 73675980 + 73675960 73676000 41 CTTTGGGGGGCTCCAGGGCCGAGGGGTCAAGAAGCAGGACC CTTTGGGGGGCTCCAGGGCCCAGGGGTCAAGAAGCAGGACC Direct Gain 0 0.947654783975682 0 0.880198836326599 prediction 0.895309567951364 Functional Gain - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73675980 chr11:73675980 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_131488 0 0 0 0 0 exosome 0 0.500231980658789 0.760397672653198 0.000463961317577644 hm5C_site_51546 DeepMRMD:0.760397672653198;iRNA_m5C:0.000463961317577644 51547 chr22 21344701 21344701 1 + A G rs200001328 21344701 - 21344681 21344721 41 ACGGGGAAGTTGCAGCAAGATGGGGGGATCTCGCCACTCTG ACGGGGAAGTTGCAGCAAGACGGGGGGATCTCGCCACTCTG Direct Gain 0 0.947641200790957 0 0.921129524707794 prediction 0.895282401581914 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21344701 chr22:21344701 synonymous SNV . 0 21 hm5C_associated_SNPs_131489 0 0 0 0 0 Nucleus 0 0.500231643921065 0.842259049415588 0.000463287842129123 hm5C_site_51547 DeepMRMD:0.842259049415588;iRNA_m5C:0.000463287842129123 51548 chr3 43732495 43732495 1 + A C rs138400599 43732495 + 43732475 43732515 41 GGCGGCGGCTATGGCGGCGGAGGAGGAGGAGGTGGACTCTG GGCGGCGGCTATGGCGGCGGCGGAGGAGGAGGTGGACTCTG Direct Gain 0 0.947627404175184 0 0.949735045433044 prediction 0.895254808350367 Functional Gain - ABHD5 ENSG00000011198 CDS Human protein_coding chr3:43732495 chr3:43732495 nonsynonymous SNV 0.959 0 21 hm5C_associated_SNPs_131490 0 0 1 0 1 Ribosome 0 0.500231643921092 0.899470090866088 0.000463287842184856 hm5C_site_51548 DeepMRMD:0.899470090866088;iRNA_m5C:0.000463287842184856 51549 chr19 16799182 16799182 1 + G C SKCM 16799182 + 16799162 16799202 41 AAGGCCAAGAAGGCGGATTAGGGGGTGGCCCAAGGGGCACC AAGGCCAAGAAGGCGGATTACGGGGTGGCCCAAGGGGCACC Direct Gain 0 0.947624271490302 0 0.946584224700928 prediction 0.895248542980605 Functional Gain - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16799182 chr19:16799182 stoploss 0.865 0 21 hm5C_associated_SNPs_131491 0 0 0 0 0 Ribosome 0 0.500231643921092 0.893168449401856 0.000463287842184856 hm5C_site_51549 DeepMRMD:0.893168449401856;iRNA_m5C:0.000463287842184856 51550 chr12 54903652 54903652 1 + C G CESC 54903652 - 54903632 54903672 41 ACAAAGAGGAAATGCAAAGAGAGGAGGGCTCCACTCACAGC ACAAAGAGGAAATGCAAAGACAGGAGGGCTCCACTCACAGC Direct Gain 0 0.947567403668634 0 0.700223922729492 prediction 0.895134807337269 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54903652 chr12:54903652 synonymous SNV . 0 21 hm5C_associated_SNPs_131492 0 0 0 0 0 Cytosol 0 0.500231898120818 0.400447845458984 0.000463796241635617 hm5C_site_51550 DeepMRMD:0.400447845458984;iRNA_m5C:0.000463796241635617 51551 chr17 77758355 77758355 1 + T G BLCA 77758355 - 77758335 77758375 41 GTGGCGGTGGCGTGGCGGGCAAGGAGACCCACCCCGGGCAT GTGGCGGTGGCGTGGCGGGCCAGGAGACCCACCCCGGGCAT Direct Gain 0 0.947555036188266 0 0.817466497421265 prediction 0.895110072376532 Functional Gain - CBX2 ENSG00000173894 CDS Human protein_coding chr17:77758355 chr17:77758355 synonymous SNV . 0 21 hm5C_associated_SNPs_131493 0 0 0 0 0 chromatin 0 0.500231643922467 0.63493299484253 0.000463287844934213 hm5C_site_51551 DeepMRMD:0.63493299484253;iRNA_m5C:0.000463287844934213 51552 chr6 52268024 52268024 1 + A G rs572302477 52268024 - 52268004 52268044 41 GGTGCTCAGGCGCTCCAAGATGGCGGTCGTCATGGCAGCGG GGTGCTCAGGCGCTCCAAGACGGCGGTCGTCATGGCAGCGG Direct Gain 0 0.947549205977977 0 0.745190858840942 prediction 0.895098411955955 Functional Gain - PAQR8 ENSG00000170915 CDS Human protein_coding chr6:52268024 chr6:52268024 nonsynonymous SNV 0.979 0 21 hm5C_associated_SNPs_131494 0 0 0 0 0 Ribosome 0 0.500231643921086 0.490381717681884 0.0004632878421722 hm5C_site_51552 DeepMRMD:0.490381717681884;iRNA_m5C:0.0004632878421722 51553 chr20 57430137 57430137 1 + A G UCEC 57430137 - 57430117 57430157 41 CGAGAAAGTTGCGGAGTAAGTTGCGCTGGGGCTTTCGGCGG CGAGAAAGTTGCGGAGTAAGCTGCGCTGGGGCTTTCGGCGG Direct Gain 0 0.947542041569432 0 0.685281276702881 prediction 0.895084083138865 Functional Gain - GNAS ENSG00000087460 CDS Human protein_coding chr20:57430137 chr20:57430137 nonsynonymous SNV 0.099 1 21 hm5C_associated_SNPs_131495 0 0 0 0 0 Cytosol 0 0.500231643921092 0.370562553405762 0.000463287842184856 hm5C_site_51553 DeepMRMD:0.370562553405762;iRNA_m5C:0.000463287842184856 51554 chr17 26862064 26862064 1 + C G GBM 26862064 - 26862044 26862084 41 GTGGGGTGTGGGCAGGCAGAGGCGAGTCCTGGGGGGTGCCT GTGGGGTGTGGGCAGGCAGACGCGAGTCCTGGGGGGTGCCT Direct Gain 0 0.947533481969193 0 0.516314148902893 prediction 0.895066963938387 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26862064 chr17:26862064 nonsynonymous SNV 0.995 5 21 hm5C_associated_SNPs_131496 0 0 0 0 0 exosome 0 0.500231643031732 0.0326282978057859 0.000463286063463464 hm5C_site_51554 DeepMRMD:0.0326282978057859;iRNA_m5C:0.000463286063463464 51555 chr2 176964653 176964653 1 + A G LUSC 176964653 - 176964633 176964673 41 CGCGCCGCGCGGGTAGGAGATAGGGGGAAGCGCGGCCAACT CGCGCCGCGCGGGTAGGAGACAGGGGGAAGCGCGGCCAACT Direct Gain 0 0.94753197654545 0 0.944658160209656 prediction 0.8950639530909 Functional Gain - HOXD12 ENSG00000170178 CDS Human protein_coding chr2:176964653 chr2:176964653 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_131497 0 0 0 0 0 unknown 0 0.500231643921092 0.889316320419312 0.000463287842184856 hm5C_site_51555 DeepMRMD:0.889316320419312;iRNA_m5C:0.000463287842184856 51556 chr1 36553836 36553836 1 + A C rs12131875 36553836 + 36553816 36553856 41 GTTGGGTGGGCAATGGAAGGAGGGAGGAGAGAAATGAATGG GTTGGGTGGGCAATGGAAGGCGGGAGGAGAGAAATGAATGG Direct Gain 0 0.947530570792873 0 0.836372852325439 prediction 0.895061141585747 Functional Gain - TEKT2 ENSG00000092850 UTR3 Human protein_coding chr1:36553836 chr1:36553836 . . 0 21 hm5C_associated_SNPs_131498 0 0 0 5 0 exosome 0 0.500231643921092 0.672745704650878 0.000463287842184856 hm5C_site_51556 DeepMRMD:0.672745704650878;iRNA_m5C:0.000463287842184856 51557 chr16 30773833 30773833 1 + C G rs542051320 30773833 - 30773813 30773853 41 GGAGCGATGCAGGGTCCCCTGAGGGGCGTCAAACGGGAGGA GGAGCGATGCAGGGTCCCCTCAGGGGCGTCAAACGGGAGGA Direct Gain 0 0.947530146663844 0 0.910952687263489 prediction 0.895060293327688 Functional Gain - RNF40 ENSG00000103549;ENSG00000196118 UTR5 Human other chr16:30773833 chr16:30773833 . . 0 21 hm5C_associated_SNPs_131499 0 0 0 0 0 Ribosome 0 0.500231643921092 0.821905374526978 0.000463287842184856 hm5C_site_51557 DeepMRMD:0.821905374526978;iRNA_m5C:0.000463287842184856 51558 chr4 110737389 110737389 1 + T C rs2276326 110737389 + 110737369 110737409 41 GGTGGCGGCTTCAACCGAGGTGGCAGCAGCAACCACTTCCG GGTGGCGGCTTCAACCGAGGCGGCAGCAGCAACCACTTCCG Direct Gain 0 0.947527992384073 0 0.815348744392395 prediction 0.895055984768147 Functional Gain - GAR1 ENSG00000109534 CDS Human protein_coding chr4:110737389 chr4:110737389 synonymous SNV . 0 21 hm5C_associated_SNPs_131500 0 0 1 0 0 chromatin 0 0.500231643934961 0.63069748878479 0.00046328786992289 hm5C_site_51558 DeepMRMD:0.63069748878479;iRNA_m5C:0.00046328786992289 51559 chr6 31541299 31541299 1 + C G CESC 31541299 - 31541279 31541319 41 TACACCATCTTCTGGGAGCTGAGGAGAGGCACATGGAAGGG TACACCATCTTCTGGGAGCTCAGGAGAGGCACATGGAAGGG Direct Gain 0 0.947508994588195 0 0.775309681892395 prediction 0.895017989176389 Functional Gain - LTA ENSG00000226979 CDS Human protein_coding chr6:31541299 chr6:31541299 synonymous SNV . 0 21 hm5C_associated_SNPs_131501 0 0 0 0 0 exosome 0 0.500231643921092 0.55061936378479 0.000463287842184856 hm5C_site_51559 DeepMRMD:0.55061936378479;iRNA_m5C:0.000463287842184856 51560 chr19 33571807 33571807 1 + A C rs202238177 33571807 + 33571787 33571827 41 AGGCATCGGTGTCGCCTCGCAGGGAACAGTTGGGTGGCTTC AGGCATCGGTGTCGCCTCGCCGGGAACAGTTGGGTGGCTTC Direct Gain 0 0.947499472949298 0 0.916158437728882 prediction 0.894998945898596 Functional Gain - GPATCH1 ENSG00000076650 UTR5 Human protein_coding chr19:33571807 chr19:33571807 . . 0 21 hm5C_associated_SNPs_131502 0 0 0 0 0 Cytosol 0 0.50023164359456 0.832316875457764 0.000463287189120365 hm5C_site_51560 DeepMRMD:0.832316875457764;iRNA_m5C:0.000463287189120365 51561 chr9 37426592 37426592 1 + A G rs147053190 37426592 - 37426572 37426612 41 GTGGTAAGTAGCAGGGAGACTGCGAGTTCGGCGGTGGTATC GTGGTAAGTAGCAGGGAGACCGCGAGTTCGGCGGTGGTATC Direct Gain 0 0.94749635200935 0 0.856051564216614 prediction 0.894992704018701 Functional Gain - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37426592 chr9:37426592 synonymous SNV . 0 21 hm5C_associated_SNPs_131503 0 0 0 0 0 Ribosome 0 0.500231643921332 0.712103128433228 0.00046328784266314 hm5C_site_51561 DeepMRMD:0.712103128433228;iRNA_m5C:0.00046328784266314 51562 chr3 51749538 51749538 1 + C G BLCA 51749538 - 51749518 51749558 41 ACAAAGACACCCAGCACAAAGAGGGTGGCCAGGGCACCGAG ACAAAGACACCCAGCACAAACAGGGTGGCCAGGGCACCGAG Direct Gain 0 0.947483384408386 0 0.89040195941925 prediction 0.894966768816773 Functional Gain - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51749538 chr3:51749538 synonymous SNV . 0 21 hm5C_associated_SNPs_131504 0 0 0 0 0 Endoplasmic reticulum 0 0.50023164392114 0.7808039188385 0.000463287842279891 hm5C_site_51562 DeepMRMD:0.7808039188385;iRNA_m5C:0.000463287842279891 51563 chr7 97361989 97361989 1 + T C LUSC 97361989 + 97361969 97362009 41 TCAGCTGTTTGCAGAAGAAATAGGAGCCAATGATGATCTGA TCAGCTGTTTGCAGAAGAAACAGGAGCCAATGATGATCTGA Direct Gain 0 0.947483224469234 0 0.797221899032593 prediction 0.894966448938467 Functional Gain - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97361989 chr7:97361989 nonsynonymous SNV 0.982 1 21 hm5C_associated_SNPs_131505 0 0 0 0 2 exosome 0 0.500231643927719 0.594443798065186 0.000463287855438699 hm5C_site_51563 DeepMRMD:0.594443798065186;iRNA_m5C:0.000463287855438699 51564 chr10 77168012 77168012 1 + T C rs145787694 77168012 + 77167992 77168032 41 CCCTCTGGGAGCCGAGATCTTGCGGGGCCAGCGAGGGCGCA CCCTCTGGGAGCCGAGATCTCGCGGGGCCAGCGAGGGCGCA Direct Gain 0 0.947482410815168 0 0.885880351066589 prediction 0.894964821630336 Functional Gain - ZNF503-AS2 ENSG00000237149 ncRNA_exonic Human antisense chr10:77168012 chr10:77168012 . . 0 21 hm5C_associated_SNPs_131506 0 0 1 0 0 unknown 0 0.50023035391025 0.771760702133178 0.000460707820500339 hm5C_site_51564 DeepMRMD:0.771760702133178;iRNA_m5C:0.000460707820500339 51565 chrX 152822455 152822455 1 + A G STAD 152822455 - 152822435 152822475 41 GAAGCCCACGTCCGCCTTCTTGAGGGCCGGCCCATCGTTGG GAAGCCCACGTCCGCCTTCTCGAGGGCCGGCCCATCGTTGG Direct Gain 0 0.947450083811036 0 0.957774639129639 prediction 0.894900167622073 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152822455 chrX:152822455 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_131507 0 0 0 0 0 exosome 0 0.500231643921093 0.915549278259278 0.0004632878421853 hm5C_site_51565 DeepMRMD:0.915549278259278;iRNA_m5C:0.0004632878421853 51566 chr19 20959119 20959119 1 + T G rs8106412 20959119 - 20959099 20959139 41 CGACCTGGAGCTCCAGCTGCAGGGAGAGACAAAGACCCCGC CGACCTGGAGCTCCAGCTGCCGGGAGAGACAAAGACCCCGC Direct Gain 0 0.947430805523317 0 0.991405010223389 prediction 0.894861611046634 Functional Gain - ZNF626;ZNF85 ENSG00000160229 UTR5 Human protein_coding chr19:20959119 chr19:20959119 . . 0 21 hm5C_associated_SNPs_131508 0 0 0 0 0 unknown 0 0.500231643921092 0.982810020446778 0.000463287842184634 hm5C_site_51566 DeepMRMD:0.982810020446778;iRNA_m5C:0.000463287842184634 51567 chr11 66627254 66627254 1 + C G UCEC 66627254 - 66627234 66627274 41 ACAGGGGCGAGGCCGGCAGCGTGGAGAAATGGGCACAGCCC ACAGGGGCGAGGCCGGCAGCCTGGAGAAATGGGCACAGCCC Direct Gain 0 0.947414171022383 0 0.881634831428528 prediction 0.894828342044767 Functional Gain - LRFN4 ENSG00000173621 CDS Human protein_coding chr11:66627254 chr11:66627254 nonsynonymous SNV 0.524 4 21 hm5C_associated_SNPs_131509 0 0 1 0 0 Ribosome 0 0.500231579985846 0.763269662857056 0.000463159971692217 hm5C_site_51567 DeepMRMD:0.763269662857056;iRNA_m5C:0.000463159971692217 51568 chr12 56031165 56031165 1 + A G STAD 56031165 - 56031145 56031185 41 GCGAAAAGGTAGAGAGAAGATGAGGGAGGCATGGGTGGTGG GCGAAAAGGTAGAGAGAAGACGAGGGAGGCATGGGTGGTGG Direct Gain 0 0.947404034877952 0 0.702360808849335 prediction 0.894808069755904 Functional Gain - OR10P1 ENSG00000175398 CDS Human protein_coding chr12:56031165 chr12:56031165 nonsynonymous SNV 0.004 1 21 hm5C_associated_SNPs_131510 0 0 0 0 0 exosome 0 0.500231611125102 0.40472161769867 0.000463222250203676 hm5C_site_51568 DeepMRMD:0.40472161769867;iRNA_m5C:0.000463222250203676 51569 chr1 224544659 224544659 1 + C G rs141928208 224544659 - 224544639 224544679 41 AAGATGAGCGCGCAACAATCGAGGAGAGAGAAGACGAACAC AAGATGAGCGCGCAACAATCCAGGAGAGAGAAGACGAACAC Direct Gain 0 0.947402948096922 0 0.76966118812561 prediction 0.894805896193844 Functional Gain - CNIH4 ENSG00000143771 CDS Human protein_coding chr1:224544659 chr1:224544659 synonymous SNV . 0 21 hm5C_associated_SNPs_131511 0 0 0 0 0 Endoplasmic reticulum 0 0.500231737552834 0.53932237625122 0.000463475105668909 hm5C_site_51569 DeepMRMD:0.53932237625122;iRNA_m5C:0.000463475105668909 51570 chr10 76940403 76940403 1 + T C rs151259296 76940403 + 76940383 76940423 41 GACAGAGAGACCAGAACCCATTGGATCAAGAGACCTGCAGG GACAGAGAGACCAGAACCCACTGGATCAAGAGACCTGCAGG Direct Gain 0 0.947398213916133 0 0.388317137956619 prediction 0.894796427832265 Functional Gain - SAMD8 ENSG00000156671 UTR3 Human protein_coding chr10:76940403 chr10:76940403 . . 0 21 hm5C_associated_SNPs_131512 0 0 1 0 0 chromatin 0 0.500231642944208 0 0.00046328588841682 hm5C_site_51570 DeepMRMD:0;iRNA_m5C:0.00046328588841682 51571 chr17 46940469 46940469 1 + T C rs142936561 46940469 + 46940449 46940489 41 CCTGCCTAACCTGAAATTATTAGGGATTTACTCAGCCCTGC CCTGCCTAACCTGAAATTATCAGGGATTTACTCAGCCCTGC Direct Gain 0 0.947396543965511 0 0.906667351722717 prediction 0.894793087931022 Functional Gain - CALCOCO2 ENSG00000136436 UTR3 Human protein_coding chr17:46940469 chr17:46940469 . . 0 21 hm5C_associated_SNPs_131513 0 0 1 0 0 Ribosome 0 0.500231643921092 0.813334703445434 0.000463287842184856 hm5C_site_51571 DeepMRMD:0.813334703445434;iRNA_m5C:0.000463287842184856 51572 chr19 52817502 52817502 1 + T C SKCM 52817502 + 52817482 52817522 41 CTTTATACAAGGATGTGATGTTGGAGAACTACAGGAACCTG CTTTATACAAGGATGTGATGCTGGAGAACTACAGGAACCTG Direct Gain 0 0.947391889661245 0 0.510191440582275 prediction 0.89478377932249 Functional Gain - ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52817502 chr19:52817502 synonymous SNV . 0 21 hm5C_associated_SNPs_131514 0 0 1 0 2 Cytosol 0 0.500231588044997 0.0203828811645499 0.000463176089994688 hm5C_site_51572 DeepMRMD:0.0203828811645499;iRNA_m5C:0.000463176089994688 51573 chr19 1469530 1469530 1 + C G rs166452 1469530 - 1469510 1469550 41 GGCGGGACGGGCTCTCGGAGGTGGTGCGCCGGGCAGGGCGC GGCGGGACGGGCTCTCGGAGCTGGTGCGCCGGGCAGGGCGC Direct Gain 0 0.947381580449709 0 0.763798773288727 prediction 0.894763160899418 Functional Gain - APC2 ENSG00000115266 CDS Human protein_coding chr19:1469530 chr19:1469530 nonsynonymous SNV 0.798 0 21 hm5C_associated_SNPs_131515 0 0 1 0 0 nucleolus 0 0.500231629135955 0.527597546577454 0.000463258271910405 hm5C_site_51573 DeepMRMD:0.527597546577454;iRNA_m5C:0.000463258271910405 51574 chr14 55243215 55243215 1 + C G rs76661249 55243215 - 55243195 55243235 41 TTCTGTGGGGAAGTGTGCACGGGCAGCGAGCGGGTCCTCTG TTCTGTGGGGAAGTGTGCACCGGCAGCGAGCGGGTCCTCTG Direct Gain 0 0.9473769610867 0 0.540413439273834 prediction 0.894753922173399 Functional Gain - SAMD4A ENSG00000020577 CDS Human protein_coding chr14:55243215 chr14:55243215 synonymous SNV . 0 21 hm5C_associated_SNPs_131516 0 0 0 0 0 chromatin 0 0.500231642705592 0.080826878547668 0.000463285411183678 hm5C_site_51574 DeepMRMD:0.080826878547668;iRNA_m5C:0.000463285411183678 51575 chr17 4789452 4789452 1 + C G BLCA 4789452 - 4789432 4789472 41 GGCGGAGGGTTCCGAGGAATGAGGAAGAGGGCTCGCATGGG GGCGGAGGGTTCCGAGGAATCAGGAAGAGGGCTCGCATGGG Direct Gain 0 0.947371721143463 0 0.941607475280762 prediction 0.894743442286927 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4789452 chr17:4789452 synonymous SNV . 0 21 hm5C_associated_SNPs_131517 0 0 0 0 0 Ribosome 0 0.500231643921093 0.883214950561524 0.000463287842185078 hm5C_site_51575 DeepMRMD:0.883214950561524;iRNA_m5C:0.000463287842185078 51576 chr7 99722440 99722440 1 + G C KIRC 99722440 + 99722420 99722460 41 AGGAGGAGGAGGAGGAAGAGGAGGAAGAGGAAGGGGGAGAC AGGAGGAGGAGGAGGAAGAGCAGGAAGAGGAAGGGGGAGAC Direct Gain 0 0.947357283835339 0 0.850435137748718 prediction 0.894714567670678 Functional Gain - CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99722440 chr7:99722440 nonsynonymous SNV 0.090 1 21 hm5C_associated_SNPs_131518 0 0 1 0 1 Endoplasmic reticulum 0 0.500231643921092 0.700870275497436 0.000463287842184856 hm5C_site_51576 DeepMRMD:0.700870275497436;iRNA_m5C:0.000463287842184856 51577 chr15 44092870 44092870 1 + G C UCEC 44092870 + 44092850 44092890 41 GTTGGAGACTGAGACCAGTGGACCAGAGCGGCCTCCGGAGA GTTGGAGACTGAGACCAGTGCACCAGAGCGGCCTCCGGAGA Direct Gain 0 0.947348856305161 0 0.475661993026733 prediction 0.894697712610322 Functional Gain - HYPK ENSG00000140264;ENSG00000242028 CDS Human other chr15:44092870 chr15:44092870 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_131519 0 0 1 0 0 Cytosol 0 0.500231644415571 0 0.000463288831142439 hm5C_site_51577 DeepMRMD:0;iRNA_m5C:0.000463288831142439 51578 chr18 907685 907685 1 + G C BLCA 907685 + 907665 907705 41 AGGAAGAGGCGTACGGCGAGGACGGAAACCCGCTGCCAGAC AGGAAGAGGCGTACGGCGAGCACGGAAACCCGCTGCCAGAC Direct Gain 0 0.947347414544576 0 0.635655641555786 prediction 0.894694829089152 Functional Gain - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:907685 chr18:907685 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131520 0 0 0 0 1 exosome 0 0.500231643921079 0.271311283111572 0.000463287842157989 hm5C_site_51578 DeepMRMD:0.271311283111572;iRNA_m5C:0.000463287842157989 51579 chr12 52409401 52409401 1 + C G rs144809421 52409401 - 52409381 52409421 41 GAACTGTGTGTGTGGAGGGTGGGGGGTCAGCCCACCACGGG GAACTGTGTGTGTGGAGGGTCGGGGGTCAGCCCACCACGGG Direct Gain 0 0.947331267327713 0 0.972817182540894 prediction 0.894662534655427 Functional Gain - GRASP ENSG00000161835 UTR3 Human protein_coding chr12:52409401 chr12:52409401 . . 0 21 hm5C_associated_SNPs_131521 0 0 0 0 0 exosome 0 0.50023164392128 0.945634365081788 0.000463287842560334 hm5C_site_51579 DeepMRMD:0.945634365081788;iRNA_m5C:0.000463287842560334 51580 chr17 77757845 77757845 1 + C G rs8080971 77757845 - 77757825 77757865 41 ACGGGGGCGCTGAGTGGAGGGGGCAGCTTGCTGGCCGGGGC ACGGGGGCGCTGAGTGGAGGCGGCAGCTTGCTGGCCGGGGC Direct Gain 0 0.94732311175192 0 0.832671463489532 prediction 0.894646223503841 Functional Gain - CBX2 ENSG00000173894 CDS Human protein_coding chr17:77757845 chr17:77757845 synonymous SNV . 0 21 hm5C_associated_SNPs_131522 0 0 0 0 0 chromatin 0 0.500231643921092 0.665342926979064 0.000463287842184856 hm5C_site_51580 DeepMRMD:0.665342926979064;iRNA_m5C:0.000463287842184856 51581 chr11 9496117 9496117 1 + G C ESCA 9496117 + 9496097 9496137 41 CAGGGGACAGTTTGCGTCTAGAGGATGGTCAAGCAGTACAG CAGGGGACAGTTTGCGTCTACAGGATGGTCAAGCAGTACAG Direct Gain 0 0.947305036837618 0 0.351554065942764 prediction 0.894610073675235 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9496117 chr11:9496117 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131523 0 0 1 0 3 chromatin 0 0.500231644064009 0 0.000463288128018657 hm5C_site_51581 DeepMRMD:0;iRNA_m5C:0.000463288128018657 51582 chr7 72396222 72396222 1 + C G rs546166359 72396222 - 72396202 72396242 41 GAGCGCGATGGGTCGGCGGGGAGGGCGGGGGGGAGCGCGGC GAGCGCGATGGGTCGGCGGGCAGGGCGGGGGGGAGCGCGGC Direct Gain 0 0.947304133907852 0 0.883081078529358 prediction 0.894608267815704 Functional Gain - POM121 ENSG00000196313 CDS Human protein_coding chr7:72396222 chr7:72396222 nonsynonymous SNV 0.061 0 21 hm5C_associated_SNPs_131524 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.766162157058716 0.000463287842184856 hm5C_site_51582 DeepMRMD:0.766162157058716;iRNA_m5C:0.000463287842184856 51583 chr1 46073526 46073526 1 + G C CESC 46073526 + 46073506 46073546 41 ATGTGGGTGGGGACGAGCCAGAGGAGAAGGTAGTTACCTCT ATGTGGGTGGGGACGAGCCACAGGAGAAGGTAGTTACCTCT Direct Gain 0 0.947302978698453 0 0.868260025978088 prediction 0.894605957396907 Functional Gain - NASP ENSG00000132780 CDS Human protein_coding chr1:46073526 chr1:46073526 nonsynonymous SNV 0.912 2 21 hm5C_associated_SNPs_131525 0 0 1 0 0 Nucleus 0 0.500231643921251 0.736520051956176 0.000463287842501936 hm5C_site_51583 DeepMRMD:0.736520051956176;iRNA_m5C:0.000463287842501936 51584 chr16 720319 720319 1 + A G COAD 720319 - 720299 720339 41 CTCGGGAAACTGGCTCATGATGGGGAGCACGGCCTCCATGG CTCGGGAAACTGGCTCATGACGGGGAGCACGGCCTCCATGG Direct Gain 0 0.947302813241737 0 0.858932793140411 prediction 0.894605626483475 Functional Gain - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:720319 chr16:720319 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_131526 0 0 0 0 0 Ribosome 0 0.500231643921118 0.717865586280822 0.000463287842235927 hm5C_site_51584 DeepMRMD:0.717865586280822;iRNA_m5C:0.000463287842235927 51585 chr2 241569480 241569480 1 + C G BLCA 241569480 - 241569460 241569500 41 ACCCAGAGCGCCAGGCTGTTGAGCAGCAGGCCTAGCACCAG ACCCAGAGCGCCAGGCTGTTCAGCAGCAGGCCTAGCACCAG Direct Gain 0 0.947300669958807 0 0.759610652923584 prediction 0.894601339917615 Functional Gain - GPR35 ENSG00000178623 CDS Human protein_coding chr2:241569480 chr2:241569480 synonymous SNV . 0 21 hm5C_associated_SNPs_131527 0 0 0 0 0 Ribosome 0 0.500231643916328 0.519221305847168 0.0004632878326567 hm5C_site_51585 DeepMRMD:0.519221305847168;iRNA_m5C:0.0004632878326567 51586 chr19 51628484 51628484 1 + G C LUSC 51628484 + 51628464 51628504 41 ACCCAGCTCGGGCAGTGTGGGAGGAGACTCGGGACCGATTC ACCCAGCTCGGGCAGTGTGGCAGGAGACTCGGGACCGATTC Direct Gain 0 0.947294555808156 0 0.909059524536133 prediction 0.894589111616313 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51628484 chr19:51628484 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131528 0 0 0 0 0 exosome 0 0.500231643921093 0.818119049072266 0.000463287842186189 hm5C_site_51586 DeepMRMD:0.818119049072266;iRNA_m5C:0.000463287842186189 51587 chr7 73609926 73609926 1 + T C rs562848775 73609926 + 73609906 73609946 41 CTTGTTTTCCCAGCAGCACATGGGGTTCCTCGGAGGAGCAG CTTGTTTTCCCAGCAGCACACGGGGTTCCTCGGAGGAGCAG Direct Gain 0 0.947290850826528 0 0.795928478240967 prediction 0.894581701653057 Functional Gain - EIF4H ENSG00000106682 UTR3 Human protein_coding chr7:73609926 chr7:73609926 . . 0 21 hm5C_associated_SNPs_131529 0 0 1 0 0 Ribosome 0 0.500231643921092 0.591856956481934 0.000463287842184634 hm5C_site_51587 DeepMRMD:0.591856956481934;iRNA_m5C:0.000463287842184634 51588 chr18 19321668 19321668 1 + T C UCEC 19321668 + 19321648 19321688 41 ATGTGGGCACCGTCCGGAGCTTCGAGAGCCCCGAGGAGGTG ATGTGGGCACCGTCCGGAGCCTCGAGAGCCCCGAGGAGGTG Direct Gain 0 0.947286298950644 0 0.410701483488083 prediction 0.894572597901288 Functional Gain - MIB1 ENSG00000101752 CDS Human protein_coding chr18:19321668 chr18:19321668 nonsynonymous SNV 0.966 0 21 hm5C_associated_SNPs_131530 0 0 1 0 0 Nucleus 0 0.500231643918972 0 0.000463287837944026 hm5C_site_51588 DeepMRMD:0;iRNA_m5C:0.000463287837944026 51589 chr6 107811761 107811761 1 + A G rs62428402 107811761 - 107811741 107811781 41 GCCGCCGCCGGCGGTGGTGGTGGCGGCGGCGGCGGCGGTGG GCCGCCGCCGGCGGTGGTGGCGGCGGCGGCGGCGGCGGTGG Direct Gain 0 0.9472629334172 0 0.904606819152832 prediction 0.894525866834399 Functional Gain - SOBP ENSG00000112320 UTR5 Human protein_coding chr6:107811761 chr6:107811761 . . 0 21 hm5C_associated_SNPs_131531 0 0 0 0 0 cytosol 0 0.500231395842165 0.809213638305664 0.000462791684329167 hm5C_site_51589 DeepMRMD:0.809213638305664;iRNA_m5C:0.000462791684329167 51590 chr19 39989682 39989682 1 + A G SKCM 39989682 - 39989662 39989702 41 CCTCCCACCTGGCTCTGACCTGGGGGAGGAAAATGAGCGCT CCTCCCACCTGGCTCTGACCCGGGGGAGGAAAATGAGCGCT Direct Gain 0 0.947235358213094 0 0.929832458496094 prediction 0.894470716426187 Functional Gain - DLL3 ENSG00000090932 CDS Human protein_coding chr19:39989682 chr19:39989682 nonsynonymous SNV 0.739 2 21 hm5C_associated_SNPs_131532 0 0 0 0 0 exosome 0 0.500231643921092 0.859664916992188 0.000463287842184856 hm5C_site_51590 DeepMRMD:0.859664916992188;iRNA_m5C:0.000463287842184856 51591 chr19 55889560 55889560 1 + G C LUAD 55889560 + 55889540 55889580 41 AGGAGACAGAGGGCGAGGAAGAGGAGGATTAGGGGAGTCCC AGGAGACAGAGGGCGAGGAACAGGAGGATTAGGGGAGTCCC Direct Gain 0 0.947232275627088 0 0.888794541358948 prediction 0.894464551254176 Functional Gain - TMEM190 ENSG00000160472 CDS Human protein_coding chr19:55889560 chr19:55889560 nonsynonymous SNV 0.016 0 21 hm5C_associated_SNPs_131533 0 0 0 0 0 exosome 0 0.500231643921092 0.777589082717896 0.000463287842184856 hm5C_site_51591 DeepMRMD:0.777589082717896;iRNA_m5C:0.000463287842184856 51592 chr22 38471217 38471217 1 + G C rs554201380 38471217 + 38471197 38471237 41 GGGGCGGGGCCGCCGCGCAAGGGGGCGACGCATAAAGGCCT GGGGCGGGGCCGCCGCGCAACGGGGCGACGCATAAAGGCCT Direct Gain 0 0.947200168867449 0 0.745780050754547 prediction 0.894400337734899 Functional Gain - PICK1 ENSG00000100151 UTR3 Human protein_coding chr22:38471217 chr22:38471217 . . 0 21 hm5C_associated_SNPs_131534 0 0 1 0 0 Ribosome 0 0.500231643921092 0.491560101509094 0.000463287842184856 hm5C_site_51592 DeepMRMD:0.491560101509094;iRNA_m5C:0.000463287842184856 51593 chr19 57867702 57867702 1 + G C rs199604217 57867702 + 57867682 57867722 41 GATGGAGGGGCCTCATTTGTGAAGAGCTGTACAGTCCACAT GATGGAGGGGCCTCATTTGTCAAGAGCTGTACAGTCCACAT Direct Gain 0 0.947194995125359 0 0.951381087303162 prediction 0.894389990250718 Functional Gain - ZNF304 ENSG00000131845 CDS Human protein_coding chr19:57867702 chr19:57867702 synonymous SNV . 0 21 hm5C_associated_SNPs_131535 0 0 1 0 0 chromatin 0 0.500231643921094 0.902762174606324 0.000463287842187299 hm5C_site_51593 DeepMRMD:0.902762174606324;iRNA_m5C:0.000463287842187299 51594 chr1 45974757 45974757 1 + C G BLCA 45974757 - 45974737 45974777 41 AGGGAGAACTAGGCTTCTCTGAGGGCTGAGCCAAGCCCAAT AGGGAGAACTAGGCTTCTCTCAGGGCTGAGCCAAGCCCAAT Direct Gain 0 0.947188859322719 0 0.976129055023193 prediction 0.894377718645438 Functional Gain - MMACHC ENSG00000132763 CDS Human protein_coding chr1:45974757 chr1:45974757 stopgain 0.035 0 21 hm5C_associated_SNPs_131536 0 0 0 0 0 Cytosol 0 0.500231643921563 0.952258110046386 0.000463287843126103 hm5C_site_51594 DeepMRMD:0.952258110046386;iRNA_m5C:0.000463287843126103 51595 chr3 50137474 50137474 1 + G C LUAD 50137474 + 50137454 50137494 41 GCGGATGTGAGGCTGATGAAGAGGAAAACAGGTGAGAGCTT GCGGATGTGAGGCTGATGAACAGGAAAACAGGTGAGAGCTT Direct Gain 0 0.947188053521288 0 0.905026614665985 prediction 0.894376107042576 Functional Gain - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50137474 chr3:50137474 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131537 0 0 1 0 1 Cytosol 0 0.500231643921094 0.81005322933197 0.000463287842187077 hm5C_site_51595 DeepMRMD:0.81005322933197;iRNA_m5C:0.000463287842187077 51596 chrX 48418954 48418954 1 + C G LGG 48418954 - 48418934 48418974 41 GGGAATCAGGGTGGGAAAAGGAGGAGAGCAGTGGGTCTGGG GGGAATCAGGGTGGGAAAAGCAGGAGAGCAGTGGGTCTGGG Direct Gain 0 0.947171993243501 0 0.823429703712463 prediction 0.894343986487002 Functional Gain - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48418954 chrX:48418954 nonsynonymous SNV 0.990 1 21 hm5C_associated_SNPs_131538 0 0 0 0 0 nucleolus 0 0.500231643921282 0.646859407424926 0.000463287842564331 hm5C_site_51596 DeepMRMD:0.646859407424926;iRNA_m5C:0.000463287842564331 51597 chr8 76477863 76477863 1 + T C rs185409544 76477863 + 76477843 76477883 41 CTGGTTGAGGAGAGGGAAAATTGGAAAAACTGGTCGAGTAA CTGGTTGAGGAGAGGGAAAACTGGAAAAACTGGTCGAGTAA Direct Gain 0 0.947168508461817 0 0.751443862915039 prediction 0.894337016923633 Functional Gain - HNF4G ENSG00000164749 UTR3 Human protein_coding chr8:76477863 chr8:76477863 . . 0 21 hm5C_associated_SNPs_131539 0 0 0 0 0 cytosol 0 0.500231643921092 0.502887725830078 0.000463287842184856 hm5C_site_51597 DeepMRMD:0.502887725830078;iRNA_m5C:0.000463287842184856 51598 chr17 41382119 41382119 1 + G C LUAD 41382119 + 41382099 41382139 41 CATCGGCAGAGGTGATAGCTGGGGAGGAGCGGGGATTTGGA CATCGGCAGAGGTGATAGCTCGGGAGGAGCGGGGATTTGGA Direct Gain 0 0.94716053037939 0 0.948885917663574 prediction 0.894321060758779 Functional Gain - LINC00854;LINC00910 ENSG00000236383 ncRNA_intronic Human protein_coding chr17:41382119 chr17:41382119 . . 0 21 hm5C_associated_SNPs_131540 0 0 1 0 0 unknown 0 0.500231643939589 0.897771835327148 0.00046328787917882 hm5C_site_51598 DeepMRMD:0.897771835327148;iRNA_m5C:0.00046328787917882 51599 chr8 75615877 75615877 1 + T C rs77156590 75615877 + 75615857 75615897 41 TACTGGGAAAACAGGAAAATTAGGAGGAATGTTCTGGAGTG TACTGGGAAAACAGGAAAATCAGGAGGAATGTTCTGGAGTG Direct Gain 0 0.94715877532657 0 0.844851493835449 prediction 0.894317550653141 Functional Gain - MIR2052HG ENSG00000254349 CDS Human lincRNA chr8:75615877 chr8:75615877 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131541 0 0 0 1 2 unknown 0 0.500231643921092 0.689702987670898 0.000463287842184856 hm5C_site_51599 DeepMRMD:0.689702987670898;iRNA_m5C:0.000463287842184856 51600 chr13 32776588 32776588 1 + C G CESC 32776588 - 32776568 32776608 41 AGGGCAAGTGACACGCTGTAGAGGGGTGGCAGCGGGCCGTG AGGGCAAGTGACACGCTGTACAGGGGTGGCAGCGGGCCGTG Direct Gain 0 0.947149506786732 0 0.861415028572083 prediction 0.894299013573463 Functional Gain - FRY ENSG00000073910 CDS Human protein_coding chr13:32776588 chr13:32776588 synonymous SNV . 0 21 hm5C_associated_SNPs_131542 0 0 0 0 0 cytosol 0 0.500231646414223 0.722830057144166 0.00046329282844626 hm5C_site_51600 DeepMRMD:0.722830057144166;iRNA_m5C:0.00046329282844626 51601 chr19 41223253 41223253 1 + T C LGG 41223253 + 41223233 41223273 41 TCCAGCCTCCACAGCGAGCCTGAGAGGGCCGGCCTCGGGCC TCCAGCCTCCACAGCGAGCCCGAGAGGGCCGGCCTCGGGCC Direct Gain 0 0.947143479115322 0 0.954005122184753 prediction 0.894286958230644 Functional Gain - ITPKC ENSG00000086544 CDS Human protein_coding chr19:41223253 chr19:41223253 synonymous SNV . 0 21 hm5C_associated_SNPs_131543 0 0 0 0 0 Cytosol 0 0.500231643955279 0.908010244369506 0.000463287910557053 hm5C_site_51601 DeepMRMD:0.908010244369506;iRNA_m5C:0.000463287910557053 51602 chrX 119292962 119292962 1 + G C BRCA 119292962 + 119292942 119292982 41 CGCTTACTGAAGAGGTCAAAGAGGAGGAAGAGGATGCACAG CGCTTACTGAAGAGGTCAAACAGGAGGAAGAGGATGCACAG Direct Gain 0 0.947109639315113 0 0.907819092273712 prediction 0.894219278630227 Functional Gain - RHOXF2;RHOXF2B ENSG00000131721 CDS Human protein_coding chrX:119292962 chrX:119292962 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_131544 0 0 0 0 1 unknown 0 0.500231643921093 0.815638184547424 0.000463287842185078 hm5C_site_51602 DeepMRMD:0.815638184547424;iRNA_m5C:0.000463287842185078 51603 chr18 77894254 77894254 1 + A G STAD 77894254 - 77894234 77894274 41 AGCAGCAGGGGGGGAATGAGTGAGGCTTCCAGGGGCACCCT AGCAGCAGGGGGGGAATGAGCGAGGCTTCCAGGGGCACCCT Direct Gain 0 0.947098620420802 0 0.894325196743011 prediction 0.894197240841603 Functional Gain - ADNP2 ENSG00000101544 CDS Human protein_coding chr18:77894254 chr18:77894254 nonsynonymous SNV 0.047 0 21 hm5C_associated_SNPs_131545 0 0 0 0 0 Cytosol 0 0.500231643921092 0.788650393486022 0.000463287842184856 hm5C_site_51603 DeepMRMD:0.788650393486022;iRNA_m5C:0.000463287842184856 51604 chr10 75255561 75255561 1 + A G UCEC 75255561 - 75255541 75255581 41 GCTGACCGCGTCGTCAAAGGTGAGAGGTGGACGAAACCCTG GCTGACCGCGTCGTCAAAGGCGAGAGGTGGACGAAACCCTG Direct Gain 0 0.947091563266174 0 0.854875922203064 prediction 0.894183126532347 Functional Gain - PPP3CB-AS1;PPP3CB ENSG00000221817;ENSG00000107758 ncRNA_exonic;splicing Human other chr10:75255561 chr10:75255561 . 1.000 0 21 hm5C_associated_SNPs_131546 0 0 1 0 0 unknown 0 0.500231643904596 0.709751844406128 0.000463287809192359 hm5C_site_51604 DeepMRMD:0.709751844406128;iRNA_m5C:0.000463287809192359 51605 chr19 41111336 41111336 1 + C G UCS 41111336 - 41111316 41111356 41 GCCTCCTGCGGGTGCTCCACGTGGACGCTCACCATAGATGC GCCTCCTGCGGGTGCTCCACCTGGACGCTCACCATAGATGC Direct Gain 0 0.947088469805922 0 0.671920776367188 prediction 0.894176939611845 Functional Gain - LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41111336 chr19:41111336 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131547 0 0 0 0 0 Cytosol 0 0.500231643921092 0.343841552734376 0.000463287842184856 hm5C_site_51605 DeepMRMD:0.343841552734376;iRNA_m5C:0.000463287842184856 51606 chr2 5832916 5832916 1 + G C READ 5832916 + 5832896 5832936 41 CCCCGGGAGGCGCTGGACACGGAGGAGGGCGAATTCATGGC CCCCGGGAGGCGCTGGACACCGAGGAGGGCGAATTCATGGC Direct Gain 0 0.947076337228612 0 0.741676211357117 prediction 0.894152674457223 Functional Gain - SOX11 ENSG00000176887 CDS Human protein_coding chr2:5832916 chr2:5832916 synonymous SNV . 0 21 hm5C_associated_SNPs_131548 0 0 0 0 0 exosome 0 0.500231643921092 0.483352422714234 0.000463287842184856 hm5C_site_51606 DeepMRMD:0.483352422714234;iRNA_m5C:0.000463287842184856 51607 chr1 202287904 202287904 1 + C G UCEC 202287904 - 202287884 202287924 41 GTTGAAGAGCAGGTACAGCAGTGGGTTGAGGCAGGCAGGCA GTTGAAGAGCAGGTACAGCACTGGGTTGAGGCAGGCAGGCA Direct Gain 0 0.947057041618478 0 0.521559655666351 prediction 0.894114083236957 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202287904 chr1:202287904 nonsynonymous SNV 0.938 1 21 hm5C_associated_SNPs_131549 0 0 0 0 0 nucleoplasm 0 0.50023164392033 0.043119311332702 0.000463287840659188 hm5C_site_51607 DeepMRMD:0.043119311332702;iRNA_m5C:0.000463287840659188 51608 chr17 42153283 42153283 1 + C G HNSC 42153283 - 42153263 42153303 41 AATGTAGAAGAGGCTGATCTGAGGGGGGTGGCCCAGCCAGT AATGTAGAAGAGGCTGATCTCAGGGGGGTGGCCCAGCCAGT Direct Gain 0 0.947042667584473 0 0.98755007982254 prediction 0.894085335168946 Functional Gain - G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42153283 chr17:42153283 nonsynonymous SNV 0.989 1 21 hm5C_associated_SNPs_131550 0 0 0 0 0 Ribosome 0 0.500231643958928 0.97510015964508 0.000463287917855215 hm5C_site_51608 DeepMRMD:0.97510015964508;iRNA_m5C:0.000463287917855215 51609 chr7 121944207 121944207 1 + C G rs151311760 121944207 - 121944187 121944227 41 GGAGTGACGGGCTCCGAGCCGCGGAAGGCCAGTCTGGAGGC GGAGTGACGGGCTCCGAGCCCCGGAAGGCCAGTCTGGAGGC Direct Gain 0 0.947030524228511 0 0.78564989566803 prediction 0.894061048457022 Functional Gain - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121944207 chr7:121944207 synonymous SNV . 0 21 hm5C_associated_SNPs_131551 0 0 0 0 0 exosome 0 0.500231643918116 0.57129979133606 0.00046328783623184 hm5C_site_51609 DeepMRMD:0.57129979133606;iRNA_m5C:0.00046328783623184 51610 chr4 9783772 9783772 1 + A G LUSC 9783772 - 9783752 9783792 41 GCAGGCAGGCGGTGACCACCTGTGAGGGCCCCAGTGGCGGT GCAGGCAGGCGGTGACCACCCGTGAGGGCCCCAGTGGCGGT Direct Gain 0 0.947010560856661 0 0.498226076364517 prediction 0.894021121713321 Functional Gain - DRD5 ENSG00000169676 CDS Human protein_coding chr4:9783772 chr4:9783772 nonsynonymous SNV 0.747 0 21 hm5C_associated_SNPs_131552 0 0 0 0 0 unknown 0 0.500231643946917 0 0.00046328789383332 hm5C_site_51610 DeepMRMD:0;iRNA_m5C:0.00046328789383332 51611 chrX 73524174 73524174 1 + G C HNSC 73524174 + 73524154 73524194 41 GATGCCCTAGAGGAGGAGCTGGAGGGCGAAGAGGTGGAGGC GATGCCCTAGAGGAGGAGCTCGAGGGCGAAGAGGTGGAGGC Direct Gain 0 0.947009390931075 0 0.948938131332397 prediction 0.89401878186215 Functional Gain - ZCCHC13 ENSG00000187969 CDS Human protein_coding chrX:73524174 chrX:73524174 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_131553 0 0 0 0 0 unknown 0 0.500231643921092 0.897876262664794 0.000463287842184856 hm5C_site_51611 DeepMRMD:0.897876262664794;iRNA_m5C:0.000463287842184856 51612 chr11 3428721 3428721 1 + A G rs185247263 3428721 - 3428701 3428741 41 GGAACAGGGGGTGTGGTTTCTGGGAGCTGGTTCTTAGATTT GGAACAGGGGGTGTGGTTTCCGGGAGCTGGTTCTTAGATTT Direct Gain 0 0.9470019705233 0 0.891728341579437 prediction 0.8940039410466 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3428721 chr11:3428721 . . 0 21 hm5C_associated_SNPs_131554 0 0 0 0 0 unknown 0 0.500231643921092 0.783456683158874 0.000463287842184634 hm5C_site_51612 DeepMRMD:0.783456683158874;iRNA_m5C:0.000463287842184634 51613 chr7 44797559 44797559 1 + C G LIHC 44797559 - 44797539 44797579 41 TAGCCAAGGGGGAGAGGCCAGAGGGGCCCATTACCCCTCCT TAGCCAAGGGGGAGAGGCCACAGGGGCCCATTACCCCTCCT Direct Gain 0 0.946995059063691 0 0.89948570728302 prediction 0.893990118127381 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44797559 chr7:44797559 nonsynonymous SNV 0.944 2 21 hm5C_associated_SNPs_131555 0 0 0 0 0 Cytosol 0 0.500231643921092 0.79897141456604 0.000463287842184856 hm5C_site_51613 DeepMRMD:0.79897141456604;iRNA_m5C:0.000463287842184856 51614 chr19 55823380 55823380 1 + C G UCEC 55823380 - 55823360 55823400 41 CTTGTCCTTGGGGGGGCCTCGGCGGGGAGAGCTGCTCAGCT CTTGTCCTTGGGGGGGCCTCCGCGGGGAGAGCTGCTCAGCT Direct Gain 0 0.946993287814979 0 0.889806985855103 prediction 0.893986575629958 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55823380 chr19:55823380 nonsynonymous SNV 0.993 3 21 hm5C_associated_SNPs_131556 0 0 0 0 0 chromatin 0 0.500231643921092 0.779613971710206 0.000463287842184856 hm5C_site_51614 DeepMRMD:0.779613971710206;iRNA_m5C:0.000463287842184856 51615 chr9 137320977 137320977 1 + T G LIHC 137320977 - 137320957 137320997 41 GATGGAGCGGTGGGAGAAGGAGGCGATGAGCAGCTCATTCC GATGGAGCGGTGGGAGAAGGCGGCGATGAGCAGCTCATTCC Direct Gain 0 0.946981796728355 0 0.818046808242798 prediction 0.893963593456709 Functional Gain - RXRA ENSG00000186350 CDS Human protein_coding chr9:137320977 chr9:137320977 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131557 0 0 0 0 0 Cytosol 0 0.500231641003606 0.636093616485596 0.000463282007212795 hm5C_site_51615 DeepMRMD:0.636093616485596;iRNA_m5C:0.000463282007212795 51616 chr11 1270354 1270354 1 + C G SKCM 1270354 - 1270334 1270374 41 GCCCGGGGTGGTCGTCCCTGGGGAAGGGGGTGACTCGGTGG GCCCGGGGTGGTCGTCCCTGCGGAAGGGGGTGACTCGGTGG Direct Gain 0 0.946976618691328 0 0.866274833679199 prediction 0.893953237382657 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1270354 chr11:1270354 nonsynonymous SNV 0.005 0 21 hm5C_associated_SNPs_131558 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921473 0.732549667358398 0.000463287842945581 hm5C_site_51616 DeepMRMD:0.732549667358398;iRNA_m5C:0.000463287842945581 51617 chr9 136324153 136324153 1 + T C LIHC 136324153 + 136324133 136324173 41 ATGGGCAGCAGGTGCTCTACTGGGAGTCAGAGAGCAGCCAG ATGGGCAGCAGGTGCTCTACCGGGAGTCAGAGAGCAGCCAG Direct Gain 0 0.946972678842916 0 0.938822627067566 prediction 0.893945357685832 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136324153 chr9:136324153 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131559 0 0 1 0 1 nucleus 0 0.500231643921093 0.877645254135132 0.000463287842185967 hm5C_site_51617 DeepMRMD:0.877645254135132;iRNA_m5C:0.000463287842185967 51618 chr9 89763574 89763574 1 + A C rs461126 89763574 + 89763554 89763594 41 GCGGCGCGGCAGCCAGCGAGAGGGGAGAAACAGATTCACAC GCGGCGCGGCAGCCAGCGAGCGGGGAGAAACAGATTCACAC Direct Gain 0 0.94697118772839 0 0.979100584983826 prediction 0.893942375456779 Functional Gain - C9orf170 ENSG00000204446 UTR5 Human lincRNA chr9:89763574 chr9:89763574 . . 0 21 hm5C_associated_SNPs_131560 0 0 0 0 0 unknown 0 0.500231615455639 0.958201169967652 0.000463230911278645 hm5C_site_51618 DeepMRMD:0.958201169967652;iRNA_m5C:0.000463230911278645 51619 chr3 32859520 32859520 1 + C G rs75296584 32859520 - 32859500 32859540 41 GAGAGGAAGAGGAGGAGGAGGAGGAGAGAGCGGACGAGGTG GAGAGGAAGAGGAGGAGGAGCAGGAGAGAGCGGACGAGGTG Direct Gain 0 0.946948944339449 0 0.752464115619659 prediction 0.893897888678898 Functional Gain - TRIM71 ENSG00000206557 UTR5 Human protein_coding chr3:32859520 chr3:32859520 . . 0 21 hm5C_associated_SNPs_131561 0 0 0 0 0 cytosol 0 0.500231643910655 0.504928231239318 0.000463287821309777 hm5C_site_51619 DeepMRMD:0.504928231239318;iRNA_m5C:0.000463287821309777 51620 chr20 62648154 62648154 1 + G C HNSC 62648154 + 62648134 62648174 41 CCGTGATTGGGATTGGGATTGAGGAGGAAGATCGGAAGCAT CCGTGATTGGGATTGGGATTCAGGAGGAAGATCGGAAGCAT Direct Gain 0 0.94694328876489 0 0.943089723587036 prediction 0.89388657752978 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62648154 chr20:62648154 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_131562 0 0 1 0 1 Cytosol 0 0.500231643921092 0.886179447174072 0.000463287842184856 hm5C_site_51620 DeepMRMD:0.886179447174072;iRNA_m5C:0.000463287842184856 51621 chr14 60975943 60975943 1 + C G rs531110837 60975943 - 60975923 60975963 41 GGAGCGGACGACCCCGACTGGAGGAGGTGCTGGCTCCGCGG GGAGCGGACGACCCCGACTGCAGGAGGTGCTGGCTCCGCGG Direct Gain 0 0.946927998985973 0 0.898682951927185 prediction 0.893855997971946 Functional Gain - SIX6 ENSG00000184302 UTR5 Human protein_coding chr14:60975943 chr14:60975943 . . 0 21 hm5C_associated_SNPs_131563 1 0 0 0 0 unknown 0 0.500231643839301 0.79736590385437 0.000463287678601043 hm5C_site_51621 DeepMRMD:0.79736590385437;iRNA_m5C:0.000463287678601043 Anophthalmia - microphthalmia Anophthalmia - microphthalmia 51622 chr9 125145851 125145851 1 + C G BLCA 125145851 - 125145831 125145871 41 GCTCTGGGGCGGGATGCCTCGGGGGTAGTGCATCAACACAG GCTCTGGGGCGGGATGCCTCCGGGGTAGTGCATCAACACAG Direct Gain 0 0.946924927067594 0 0.965175271034241 prediction 0.893849854135188 Functional Gain - PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125145851 chr9:125145851 nonsynonymous SNV 0.011 1 21 hm5C_associated_SNPs_131564 0 0 0 0 0 nucleolus 0 0.500231643921081 0.930350542068482 0.000463287842161764 hm5C_site_51622 DeepMRMD:0.930350542068482;iRNA_m5C:0.000463287842161764 51623 chr17 900427 900427 1 + A C rs143321619 900427 + 900407 900447 41 GGAGGCTCGGCCCCTGAGACAGCGGGTTCCGCCGAAGCTCC GGAGGCTCGGCCCCTGAGACCGCGGGTTCCGCCGAAGCTCC Direct Gain 0 0.946922776547594 0 0.895071268081665 prediction 0.893845553095188 Functional Gain - TIMM22 ENSG00000177370 CDS Human protein_coding chr17:900427 chr17:900427 synonymous SNV . 0 21 hm5C_associated_SNPs_131565 0 0 1 0 0 Cytosol 0 0.50023164392108 0.79014253616333 0.000463287842160209 hm5C_site_51623 DeepMRMD:0.79014253616333;iRNA_m5C:0.000463287842160209 51624 chrX 154467737 154467737 1 + T C rs3599 154467737 + 154467717 154467757 41 CTCAGATAAGTGCAGTGTCTTTGCAATGCCAACATAAGGGA CTCAGATAAGTGCAGTGTCTCTGCAATGCCAACATAAGGGA Direct Gain 0 0.94691645684235 0 0.550122380256653 prediction 0.893832913684701 Functional Gain - VBP1 ENSG00000155959 UTR3 Human protein_coding chrX:154467737 chrX:154467737 . . 0 21 hm5C_associated_SNPs_131566 0 0 1 0 0 Ribosome 0 0.500231558357967 0.100244760513306 0.000463116715933243 hm5C_site_51624 DeepMRMD:0.100244760513306;iRNA_m5C:0.000463116715933243 51625 chr7 4794244 4794244 1 + A G UCEC 4794244 - 4794224 4794264 41 CGCCAGGTGGGCTCAGACCTTGGGGCTGTCTCCTCCAGACG CGCCAGGTGGGCTCAGACCTCGGGGCTGTCTCCTCCAGACG Direct Gain 0 0.946911121770764 0 0.897679209709167 prediction 0.893822243541528 Functional Gain - FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4794244 chr7:4794244 nonsynonymous SNV 0.996 3 21 hm5C_associated_SNPs_131567 0 0 0 0 0 Endoplasmic reticulum 0 0.5002316439211 0.795358419418334 0.000463287842200177 hm5C_site_51625 DeepMRMD:0.795358419418334;iRNA_m5C:0.000463287842200177 51626 chrX 57618849 57618849 1 + A C PAAD 57618849 + 57618829 57618869 41 GTTGAGGGAGGAGGCCGAGGAGGGCCCGGGGCTCCAGGGGG GTTGAGGGAGGAGGCCGAGGCGGGCCCGGGGCTCCAGGGGG Direct Gain 0 0.946907918929512 0 0.771158397197723 prediction 0.893815837859025 Functional Gain - ZXDB ENSG00000198455 CDS Human protein_coding chrX:57618849 chrX:57618849 nonsynonymous SNV 0.014 0 21 hm5C_associated_SNPs_131568 0 0 0 0 0 Cytosol 0 0.500231643921092 0.542316794395446 0.000463287842184856 hm5C_site_51626 DeepMRMD:0.542316794395446;iRNA_m5C:0.000463287842184856 51627 chr7 116139983 116139983 1 + A G COAD 116139983 - 116139963 116140003 41 GCCCGCCCCGGGCTTCACCTTGAGATGCGAGTTGAGCCGGT GCCCGCCCCGGGCTTCACCTCGAGATGCGAGTTGAGCCGGT Direct Gain 0 0.946903547051123 0 0.943168878555298 prediction 0.893807094102246 Functional Gain - CAV2 ENSG00000105971 CDS Human protein_coding chr7:116139983 chr7:116139983 nonsynonymous SNV 0.964 2 21 hm5C_associated_SNPs_131569 0 0 0 0 0 Ribosome 0 0.500231629296228 0.886337757110596 0.000463258592456217 hm5C_site_51627 DeepMRMD:0.886337757110596;iRNA_m5C:0.000463258592456217 51628 chr2 32526479 32526479 1 + T C KIRC 32526479 + 32526459 32526499 41 TGGCCAAGTCCTTGGAGTTATAGGATATTCATTACTTCCTC TGGCCAAGTCCTTGGAGTTACAGGATATTCATTACTTCCTC Direct Gain 0 0.946901904223854 0 0.849129676818848 prediction 0.893803808447708 Functional Gain - YIPF4 ENSG00000119820 CDS Human protein_coding chr2:32526479 chr2:32526479 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131570 0 0 1 0 2 Ribosome 0 0.500231555319026 0.698259353637696 0.000463110638052378 hm5C_site_51628 DeepMRMD:0.698259353637696;iRNA_m5C:0.000463110638052378 51629 chr18 59855215 59855215 1 + G C LUSC 59855215 + 59855195 59855235 41 CCTGGAGCAGCCGGCGTTGGGGGCGCTGGAGGTCGGGAACC CCTGGAGCAGCCGGCGTTGGCGGCGCTGGAGGTCGGGAACC Direct Gain 0 0.946900446640974 0 0.906451523303986 prediction 0.893800893281947 Functional Gain - KIAA1468 ENSG00000134444 CDS Human protein_coding chr18:59855215 chr18:59855215 synonymous SNV . 0 21 hm5C_associated_SNPs_131571 0 0 1 0 1 Cytosol 0 0.500231643921092 0.812903046607972 0.000463287842184856 hm5C_site_51629 DeepMRMD:0.812903046607972;iRNA_m5C:0.000463287842184856 51630 chr19 55401110 55401110 1 + T C GBM 55401110 + 55401090 55401130 41 TGGCCATACTGGTTGAAAATTGGCACAGCCATACGGCACTG TGGCCATACTGGTTGAAAATCGGCACAGCCATACGGCACTG Direct Gain 0 0.946897366201241 0 0.789610624313354 prediction 0.893794732402481 Functional Gain - FCAR ENSG00000186431 CDS Human protein_coding chr19:55401110 chr19:55401110 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_131572 0 0 0 0 1 Nucleus 0 0.500230442312731 0.579221248626708 0.000460884625461677 hm5C_site_51630 DeepMRMD:0.579221248626708;iRNA_m5C:0.000460884625461677 51631 chr14 101538432 101538432 1 + T C rs10130558 101538432 + 101538412 101538452 41 CCGGGTGGGGAGGGGGCTGGTTGGGAGAGGAAAGGCTGGAA CCGGGTGGGGAGGGGGCTGGCTGGGAGAGGAAAGGCTGGAA Direct Gain 0 0.946896885135163 0 0.775444269180298 prediction 0.893793770270327 Functional Gain - MEG9 ENSG00000223403 ncRNA_exonic Human lincRNA chr14:101538432 chr14:101538432 . . 0 21 hm5C_associated_SNPs_131573 0 0 1 0 0 unknown 0 0.500231643921092 0.550888538360596 0.000463287842184856 hm5C_site_51631 DeepMRMD:0.550888538360596;iRNA_m5C:0.000463287842184856 51632 chr16 135506 135506 1 + C G OV 135506 - 135486 135526 41 CTGCAGAGCTCGCGGTCCTTGAGGACACGGCTGGCGGTGCC CTGCAGAGCTCGCGGTCCTTCAGGACACGGCTGGCGGTGCC Direct Gain 0 0.946896227858617 0 0.964494705200195 prediction 0.893792455717235 Functional Gain - MPG ENSG00000103152 CDS Human protein_coding chr16:135506 chr16:135506 synonymous SNV . 0 21 hm5C_associated_SNPs_131574 0 0 0 0 0 Ribosome 0 0.500230149704603 0.92898941040039 0.000460299409206 hm5C_site_51632 DeepMRMD:0.92898941040039;iRNA_m5C:0.000460299409206 51633 chr5 140614308 140614308 1 + G C rs61738060 140614308 + 140614288 140614328 41 GTGGAAGACCTGGCTGCAAGGGGGGGCCAGAGTCATCTTTG GTGGAAGACCTGGCTGCAAGCGGGGGCCAGAGTCATCTTTG Direct Gain 0 0.946890150425777 0 0.971521496772766 prediction 0.893780300851554 Functional Gain - PCDHB18P ENSG00000146001 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:140614308 chr5:140614308 . . 0 21 hm5C_associated_SNPs_131575 0 0 0 0 0 unknown 0 0.500231643962174 0.943042993545532 0.000463287924348021 hm5C_site_51633 DeepMRMD:0.943042993545532;iRNA_m5C:0.000463287924348021 51634 chr1 100731969 100731969 1 + T C SKCM 100731969 + 100731949 100731989 41 GGAGGTCGATGGCAGCATCATGGAAGGGGTGAGTACAGAGC GGAGGTCGATGGCAGCATCACGGAAGGGGTGAGTACAGAGC Direct Gain 0 0.946840521245048 0 0.493640065193176 prediction 0.893681042490096 Functional Gain - RTCA ENSG00000137996 CDS Human protein_coding chr1:100731969 chr1:100731969 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131576 0 0 1 0 1 Ribosome 0 0.500231643921092 0 0.000463287842184856 hm5C_site_51634 DeepMRMD:0;iRNA_m5C:0.000463287842184856 51635 chr5 132150288 132150288 1 + C G rs114635812 132150288 - 132150268 132150308 41 AGCAGCAGCCCGTGCAGCTGGTGGGTCCAGCGGCCCCCGGC AGCAGCAGCCCGTGCAGCTGCTGGGTCCAGCGGCCCCCGGC Direct Gain 0 0.946822519606108 0 0.572944819927216 prediction 0.893645039212215 Functional Gain - SOWAHA ENSG00000198944 CDS Human protein_coding chr5:132150288 chr5:132150288 nonsynonymous SNV 0.934 0 21 hm5C_associated_SNPs_131577 0 0 0 0 0 exosome 0 0.500231643850435 0.145889639854432 0.000463287700870785 hm5C_site_51635 DeepMRMD:0.145889639854432;iRNA_m5C:0.000463287700870785 51636 chr14 102679026 102679026 1 + T C rs546528204 102679026 + 102679006 102679046 41 CCGCAGACCTGGGGAGGGCCTGGGGAGGGGTGGCCGCGGTG CCGCAGACCTGGGGAGGGCCCGGGGAGGGGTGGCCGCGGTG Direct Gain 0 0.946818981791467 0 0.942925453186035 prediction 0.893637963582935 Functional Gain - WDR20 ENSG00000140153 UTR3 Human protein_coding chr14:102679026 chr14:102679026 . . 0 21 hm5C_associated_SNPs_131578 0 0 1 0 0 Cytosol 0 0.500231643921086 0.88585090637207 0.000463287842171756 hm5C_site_51636 DeepMRMD:0.88585090637207;iRNA_m5C:0.000463287842171756 51637 chr9 137024945 137024945 1 + G C rs564985619 137024945 + 137024925 137024965 41 GGCCCCTTCAGTCTTGTTCTGGGGGGACGGCCCACTCCGGG GGCCCCTTCAGTCTTGTTCTCGGGGGACGGCCCACTCCGGG Direct Gain 0 0.946757354815633 0 0.9944748878479 prediction 0.893514709631266 Functional Gain - WDR5 ENSG00000196363 UTR3 Human protein_coding chr9:137024945 chr9:137024945 . . 0 21 hm5C_associated_SNPs_131579 0 0 1 0 0 Cytosol 0 0.500231643921092 0.9889497756958 0.000463287842184856 hm5C_site_51637 DeepMRMD:0.9889497756958;iRNA_m5C:0.000463287842184856 51638 chr2 113343947 113343947 1 + G C LUSC 113343947 + 113343927 113343967 41 ACCTGCAACTGTGGAGGTAAGAGGGGCTCACCTCAGTTCAT ACCTGCAACTGTGGAGGTAACAGGGGCTCACCTCAGTTCAT Direct Gain 0 0.946733380338054 0 0.858429789543152 prediction 0.893466760676108 Functional Gain - CHCHD5 ENSG00000125611 CDS Human protein_coding chr2:113343947 chr2:113343947 nonsynonymous SNV 0.072 1 21 hm5C_associated_SNPs_131580 0 0 1 0 0 Ribosome 0 0.50023164875445 0.716859579086304 0.000463297508899396 hm5C_site_51638 DeepMRMD:0.716859579086304;iRNA_m5C:0.000463297508899396 51639 chr2 74684734 74684734 1 + A G rs368166183 74684734 - 74684714 74684754 41 TCCGCTGCAGTAGCGCACCATGGGGGCCGGAGCCGCAGCCC TCCGCTGCAGTAGCGCACCACGGGGGCCGGAGCCGCAGCCC Direct Gain 0 0.946726894883163 0 0.954147100448608 prediction 0.893453789766326 Functional Gain - INO80B ENSG00000115274 CDS Human protein_coding chr2:74684734 chr2:74684734 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_131581 0 0 0 0 0 Ribosome 0 0.500231643921216 0.908294200897216 0.00046328784243288 hm5C_site_51639 DeepMRMD:0.908294200897216;iRNA_m5C:0.00046328784243288 51640 chr19 51629046 51629046 1 + A G COAD 51629046 - 51629026 51629066 41 TGAGGCTGGTGCCATGGTCCTGGGGCTGTGGGATGAGGGTG TGAGGCTGGTGCCATGGTCCCGGGGCTGTGGGATGAGGGTG Direct Gain 0 0.946718280577387 0 0.770814836025238 prediction 0.893436561154774 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51629046 chr19:51629046 nonsynonymous SNV 0.108 2 21 hm5C_associated_SNPs_131582 0 0 0 0 0 exosome 0 0.500231643933973 0.541629672050476 0.000463287867945139 hm5C_site_51640 DeepMRMD:0.541629672050476;iRNA_m5C:0.000463287867945139 51641 chr3 49679989 49679989 1 + C G SARC 49679989 - 49679969 49680009 41 TGTGGAAGGCTTGGTGGGTTGAGGGGGCTGAGGAGACACCC TGTGGAAGGCTTGGTGGGTTCAGGGGGCTGAGGAGACACCC Direct Gain 0 0.946714501289497 0 0.926784038543701 prediction 0.893429002578994 Functional Gain - BSN ENSG00000164061 CDS Human protein_coding chr3:49679989 chr3:49679989 nonsynonymous SNV 0.977 0 21 hm5C_associated_SNPs_131583 0 0 0 0 0 chromatin 0 0.500231643921107 0.853568077087402 0.00046328784221461 hm5C_site_51641 DeepMRMD:0.853568077087402;iRNA_m5C:0.00046328784221461 51642 chr1 149858656 149858656 1 + G C CESC 149858656 + 149858636 149858676 41 GGCAACTACGCGGAGCGGGTGGGGGCCGGCGCGCCCGTCTA GGCAACTACGCGGAGCGGGTCGGGGCCGGCGCGCCCGTCTA Direct Gain 0 0.94671432564101 0 0.854624390602112 prediction 0.89342865128202 Functional Gain - HIST2H2AC ENSG00000184260 CDS Human protein_coding chr1:149858656 chr1:149858656 synonymous SNV . 0 21 hm5C_associated_SNPs_131584 0 0 1 0 0 Ribosome 0 0.500231643921093 0.709248781204224 0.000463287842185078 hm5C_site_51642 DeepMRMD:0.709248781204224;iRNA_m5C:0.000463287842185078 51643 chrX 101805037 101805037 1 + G C HNSC 101805037 + 101805017 101805057 41 GAGGTGGGTAGGAGGTTAAGGGGGATCCTGAGCACTGGAGC GAGGTGGGTAGGAGGTTAAGCGGGATCCTGAGCACTGGAGC Direct Gain 0 0.946710913678106 0 0.96120274066925 prediction 0.893421827356211 Functional Gain - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101805037 chrX:101805037 . . 0 21 hm5C_associated_SNPs_131585 0 0 0 0 1 unknown 0 0.500231643921092 0.9224054813385 0.000463287842184856 hm5C_site_51643 DeepMRMD:0.9224054813385;iRNA_m5C:0.000463287842184856 51644 chr13 31225075 31225075 1 + T C rs114904629 31225075 + 31225055 31225095 41 GGGCGGAGGTTGCAGAGAGCTGAGATCGTGCCCTGCACTCC GGGCGGAGGTTGCAGAGAGCCGAGATCGTGCCCTGCACTCC Direct Gain 0 0.946706124260362 0 0.880812764167786 prediction 0.893412248520724 Functional Gain - USPL1 ENSG00000132952 intronic Human protein_coding chr13:31225075 chr13:31225075 . . 0 21 hm5C_associated_SNPs_131586 0 0 0 0 0 Cytosol 0 0.500231643580291 0.761625528335572 0.000463287160581638 hm5C_site_51644 DeepMRMD:0.761625528335572;iRNA_m5C:0.000463287160581638 51645 chr1 228558866 228558866 1 + C G CESC 228558866 - 228558846 228558886 41 ATGGGGCGAGCTCGTTGTCAGAGGAGGAGGAGGAACTGGAG ATGGGGCGAGCTCGTTGTCACAGGAGGAGGAGGAACTGGAG Direct Gain 0 0.946676447568656 0 0.89681488275528 prediction 0.893352895137313 Functional Gain - OBSCN ENSG00000154358 CDS Human protein_coding chr1:228558866 chr1:228558866 nonsynonymous SNV 0.023 3 21 hm5C_associated_SNPs_131587 0 0 0 0 0 Ribosome 0 0.500231643921092 0.79362976551056 0.000463287842183968 hm5C_site_51645 DeepMRMD:0.79362976551056;iRNA_m5C:0.000463287842183968 51646 chr2 71753444 71753444 1 + T G UCEC 71753444 - 71753424 71753464 41 CCTCGGCCCGGAAGACCTTCAGGCAGAAGTGGGCTCCTCGC CCTCGGCCCGGAAGACCTTCCGGCAGAAGTGGGCTCCTCGC Direct Gain 0 0.946647621915558 0 0.96509575843811 prediction 0.893295243831116 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71753444 chr2:71753444 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131588 0 0 0 0 0 Nucleus 0 0.500231643921093 0.93019151687622 0.000463287842186189 hm5C_site_51646 DeepMRMD:0.93019151687622;iRNA_m5C:0.000463287842186189 51647 chr7 42972035 42972035 1 + G C READ 42972035 + 42972015 42972055 41 TTCGCCGTGGTCTGCGGCCCGGGGAGTGCTTCGAAACTACT TTCGCCGTGGTCTGCGGCCCCGGGAGTGCTTCGAAACTACT Direct Gain 0 0.946641963003064 0 0.794445037841797 prediction 0.893283926006128 Functional Gain - MRPL32 ENSG00000106591 CDS Human protein_coding chr7:42972035 chr7:42972035 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131589 0 0 1 0 1 Ribosome 0 0.500231643921092 0.588890075683594 0.000463287842184856 hm5C_site_51647 DeepMRMD:0.588890075683594;iRNA_m5C:0.000463287842184856 51648 chrX 102632529 102632529 1 + G C LUSC 102632529 + 102632509 102632549 41 CCAGCCTGCAGGAAATCGACGGGGACAGGCTCGCCGACTTG CCAGCCTGCAGGAAATCGACCGGGACAGGCTCGCCGACTTG Direct Gain 0 0.946632985959995 0 0.864782929420471 prediction 0.893265971919991 Functional Gain - BEX3 ENSG00000166681 CDS Human protein_coding chrX:102632529 chrX:102632529 nonsynonymous SNV 0.978 1 21 hm5C_associated_SNPs_131590 0 0 1 0 1 Cytosol 0 0.500231643863014 0.729565858840942 0.000463287726027328 hm5C_site_51648 DeepMRMD:0.729565858840942;iRNA_m5C:0.000463287726027328 51649 chr12 27109540 27109540 1 + T C rs144362881 27109540 + 27109520 27109560 41 GCCACGGTCCACGTTAGTTATGGGAATCCAGCAAGAAAACA GCCACGGTCCACGTTAGTTACGGGAATCCAGCAAGAAAACA Direct Gain 0 0.946629420435236 0 0.488274544477463 prediction 0.893258840870471 Functional Gain - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27109540 chr12:27109540 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131591 0 0 1 0 2 Cytosol 0 0.500231643921142 0 0.000463287842283666 hm5C_site_51649 DeepMRMD:0;iRNA_m5C:0.000463287842283666 51650 chr11 727396 727396 1 + A G rs61876718 727396 - 727376 727416 41 GGAGCAGAACTCTGCGTGTGTGCGAGGTTCAGCCTGGCCAG GGAGCAGAACTCTGCGTGTGCGCGAGGTTCAGCCTGGCCAG Direct Gain 0 0.946628684160772 0 0.835374295711517 prediction 0.893257368321543 Functional Gain - EPS8L2 ENSG00000177106 UTR3 Human protein_coding chr11:727396 chr11:727396 . . 0 21 hm5C_associated_SNPs_131592 0 0 0 0 0 Cytosol 0 0.500231909269465 0.670748591423034 0.000463818538929628 hm5C_site_51650 DeepMRMD:0.670748591423034;iRNA_m5C:0.000463818538929628 51651 chr1 33150718 33150718 1 + T C rs602580 33150718 + 33150698 33150738 41 GCCTCGGTCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCA GCCTCGGTCTCCCAAAGTGCCGGGATTACAGGTGTGAGCCA Direct Gain 0 0.946590368578252 0 0.738878309726715 prediction 0.893180737156503 Functional Gain - RBBP4 ENSG00000162521 UTR3 Human protein_coding chr1:33150718 chr1:33150718 . . 0 21 hm5C_associated_SNPs_131593 0 0 1 0 0 Ribosome 0 0.500231644522146 0.47775661945343 0.000463289044292825 hm5C_site_51651 DeepMRMD:0.47775661945343;iRNA_m5C:0.000463289044292825 51652 chr15 90805384 90805384 1 + A G rs138900183 90805384 - 90805364 90805404 41 CCTTGGAAGCAGCAGTCTCTTGGAAGAGGGAGCCATTGTGC CCTTGGAAGCAGCAGTCTCTCGGAAGAGGGAGCCATTGTGC Direct Gain 0 0.946590031927936 0 0.935299634933472 prediction 0.893180063855871 Functional Gain - TTLL13P;NGRN ENSG00000213471 CDS Human protein_coding chr15:90805384 chr15:90805384 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131594 0 0 0 0 0 unknown 0 0.500231643921092 0.870599269866944 0.000463287842184856 hm5C_site_51652 DeepMRMD:0.870599269866944;iRNA_m5C:0.000463287842184856 51653 chr5 140621642 140621642 1 + T C rs548257858 140621642 + 140621622 140621662 41 GGAGGAGCAGGGAGGCCTCATTGGGTCGCTGCTCGGTGCCC GGAGGAGCAGGGAGGCCTCACTGGGTCGCTGCTCGGTGCCC Direct Gain 0 0.946558456326697 0 0.775486469268799 prediction 0.893116912653394 Functional Gain - PCDHB19P ENSG00000262096 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:140621642 chr5:140621642 . . 0 21 hm5C_associated_SNPs_131595 0 0 0 0 0 unknown 0 0.500235906768299 0.550972938537598 0.00047181353659842 hm5C_site_51653 DeepMRMD:0.550972938537598;iRNA_m5C:0.00047181353659842 51654 chr22 51117506 51117506 1 + C G rs187348640 51117506 - 51117486 51117526 41 CCCCCCAGGGCGCTGTGGTAGAGGGGTGTCAAGCCGCGGCT CCCCCCAGGGCGCTGTGGTACAGGGGTGTCAAGCCGCGGCT Direct Gain 0 0.946558021268205 0 0.786293745040894 prediction 0.89311604253641 Functional Gain - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51117506 chr22:51117506 synonymous SNV . 0 21 hm5C_associated_SNPs_131596 0 0 0 0 0 cytosol 0 0.500231573419504 0.572587490081788 0.000463146839007056 hm5C_site_51654 DeepMRMD:0.572587490081788;iRNA_m5C:0.000463146839007056 51655 chr14 105715170 105715170 1 + C G rs186857534 105715170 - 105715150 105715190 41 CGGGGGCAGCCTCGGCGCCTGTGGACGCCGCGCCCCGCGCC CGGGGGCAGCCTCGGCGCCTCTGGACGCCGCGCCCCGCGCC Direct Gain 0 0.946540463053992 0 0.960965633392334 prediction 0.893080926107985 Functional Gain - BTBD6 ENSG00000184887;ENSG00000185024 UTR5 Human other chr14:105715170 chr14:105715170 . . 0 21 hm5C_associated_SNPs_131597 0 0 1 0 0 Cytosol 0 0.500231641219303 0.921931266784668 0.000463282438605939 hm5C_site_51655 DeepMRMD:0.921931266784668;iRNA_m5C:0.000463282438605939 51656 chr16 86601490 86601490 1 + C G HNSC 86601490 - 86601470 86601510 41 GCCGCCGGGGGCGGCTCCTTGAGGTGGGCCCGCTCCTCCTT GCCGCCGGGGGCGGCTCCTTCAGGTGGGCCCGCTCCTCCTT Direct Gain 0 0.946536495728145 0 0.934625744819641 prediction 0.89307299145629 Functional Gain - FOXC2 ENSG00000176692 CDS Human protein_coding chr16:86601490 chr16:86601490 synonymous SNV . 0 21 hm5C_associated_SNPs_131598 0 0 0 0 0 exosome 0 0.500231643921092 0.869251489639282 0.000463287842184856 hm5C_site_51656 DeepMRMD:0.869251489639282;iRNA_m5C:0.000463287842184856 51657 chr19 50155928 50155928 1 + C G CESC 50155928 - 50155908 50155948 41 ACCCCTTCTCCCGGGAAGAGGAGGAGGAGGAGGCGGCCCCC ACCCCTTCTCCCGGGAAGAGCAGGAGGAGGAGGCGGCCCCC Direct Gain 0 0.94651957268588 0 0.902941942214966 prediction 0.89303914537176 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50155928 chr19:50155928 nonsynonymous SNV 0.115 3 21 hm5C_associated_SNPs_131599 0 0 0 0 0 Cytosol 0 0.500231643916594 0.805883884429932 0.000463287833188053 hm5C_site_51657 DeepMRMD:0.805883884429932;iRNA_m5C:0.000463287833188053 51658 chr16 67236330 67236330 1 + T G KIRP 67236330 - 67236310 67236350 41 TCTGGTCTTGGCCGAAGAACATGGGTGAGAAGTCCTGGGCT TCTGGTCTTGGCCGAAGAACCTGGGTGAGAAGTCCTGGGCT Direct Gain 0 0.946518542722042 0 0.785006463527679 prediction 0.893037085444083 Functional Gain - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67236330 chr16:67236330 nonsynonymous SNV 0.976 3 21 hm5C_associated_SNPs_131600 0 0 0 0 0 Cytosol 0 0.500231643920471 0.570012927055358 0.000463287840941851 hm5C_site_51658 DeepMRMD:0.570012927055358;iRNA_m5C:0.000463287840941851 51659 chr1 27089606 27089606 1 + T G SKCM 27089606 - 27089586 27089626 41 GCGTGACTCATCCTCCCTGGAGGGAGTGTGCCATAAGGTGG GCGTGACTCATCCTCCCTGGCGGGAGTGTGCCATAAGGTGG Direct Gain 0 0.946505552105814 0 0.743132472038269 prediction 0.893011104211627 Functional Gain - ARID1A ENSG00000117713 CDS Human protein_coding chr1:27089606 chr1:27089606 synonymous SNV . 0 21 hm5C_associated_SNPs_131601 0 0 0 0 0 Nucleus 0 0.500231643921093 0.486264944076538 0.000463287842186855 hm5C_site_51659 DeepMRMD:0.486264944076538;iRNA_m5C:0.000463287842186855 51660 chr14 94395127 94395127 1 + G C LUAD 94395127 + 94395107 94395147 41 CCAGGGAGGGACCTCCCTATGAGGGTAAGAAAAATTGCAAG CCAGGGAGGGACCTCCCTATCAGGGTAAGAAAAATTGCAAG Direct Gain 0 0.946498943682638 0 0.923263728618622 prediction 0.892997887365275 Functional Gain - FAM181A ENSG00000140067 CDS Human protein_coding chr14:94395127 chr14:94395127 nonsynonymous SNV 0.978 3 21 hm5C_associated_SNPs_131602 0 0 0 0 0 exosome 0 0.500231643921092 0.846527457237244 0.000463287842184856 hm5C_site_51660 DeepMRMD:0.846527457237244;iRNA_m5C:0.000463287842184856 51661 chr2 10188508 10188508 1 + C G STAD 10188508 - 10188488 10188528 41 GCACAGGGGGCAGGCGGAGGGAGGGCTCCCTGGGGCAGGAC GCACAGGGGGCAGGCGGAGGCAGGGCTCCCTGGGGCAGGAC Direct Gain 0 0.946490658057979 0 0.776662349700928 prediction 0.892981316115957 Functional Gain - KLF11 ENSG00000172059 CDS Human protein_coding chr2:10188508 chr2:10188508 synonymous SNV . 0 21 hm5C_associated_SNPs_131603 0 0 0 0 0 nucleoplasm 0 0.500231645921322 0.553324699401856 0.000463291842643043 hm5C_site_51661 DeepMRMD:0.553324699401856;iRNA_m5C:0.000463291842643043 51662 chr17 73820444 73820444 1 + G C CESC 73820444 + 73820424 73820464 41 CTGTGTGAGCTCTGCGCTGAGGGCAGCGAGTGCCCCATCTG CTGTGTGAGCTCTGCGCTGACGGCAGCGAGTGCCCCATCTG Direct Gain 0 0.946486822406045 0 0.91773533821106 prediction 0.89297364481209 Functional Gain - UNK ENSG00000132478 CDS Human protein_coding chr17:73820444 chr17:73820444 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_131604 0 0 1 0 0 Cytosol 0 0.500232031363212 0.83547067642212 0.000464062726423631 hm5C_site_51662 DeepMRMD:0.83547067642212;iRNA_m5C:0.000464062726423631 51663 chr10 99081114 99081114 1 + T C rs540154788 99081114 + 99081094 99081134 41 AGCGGGTGGCTCTGGGATCCTGGGGGCCTGGGTTGGGGGCT AGCGGGTGGCTCTGGGATCCCGGGGGCCTGGGTTGGGGGCT Direct Gain 0 0.946485079366433 0 0.971096992492676 prediction 0.892970158732867 Functional Gain - FRAT1 ENSG00000165879 UTR3 Human protein_coding chr10:99081114 chr10:99081114 . . 0 21 hm5C_associated_SNPs_131605 0 0 0 0 0 Ribosome 0 0.500231643951474 0.942193984985352 0.000463287902947362 hm5C_site_51663 DeepMRMD:0.942193984985352;iRNA_m5C:0.000463287902947362 51664 chr20 307891 307891 1 + C G rs563524410 307891 - 307871 307911 41 AGAAGGCGGGCCGGGCGAGGGAGGAGAGATTCCGGAGCAAA AGAAGGCGGGCCGGGCGAGGCAGGAGAGATTCCGGAGCAAA Direct Gain 0 0.946481802105542 0 0.868704378604889 prediction 0.892963604211084 Functional Gain - SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307891 chr20:307891 . . 0 21 hm5C_associated_SNPs_131606 0 0 0 0 0 Ribosome 0 0.500231643921092 0.737408757209778 0.000463287842184856 hm5C_site_51664 DeepMRMD:0.737408757209778;iRNA_m5C:0.000463287842184856 51665 chr12 4918627 4918627 1 + T C rs528689972 4918627 + 4918607 4918647 41 GAGGCCTGCGGCGCGGCTCCTAGGGAGGAGGTGGCGGCTGT GAGGCCTGCGGCGCGGCTCCCAGGGAGGAGGTGGCGGCTGT Direct Gain 0 0.946430599247112 0 0.859069466590881 prediction 0.892861198494224 Functional Gain - KCNA6 ENSG00000151079 UTR5 Human protein_coding chr12:4918627 chr12:4918627 . . 0 21 hm5C_associated_SNPs_131607 0 0 0 0 0 exosome 0 0.500231643921092 0.718138933181762 0.000463287842184856 hm5C_site_51665 DeepMRMD:0.718138933181762;iRNA_m5C:0.000463287842184856 51666 chr5 109025545 109025545 1 + G C rs574054002 109025545 + 109025525 109025565 41 GAAGGGGCTCAGTCGGGGTAGGCGGGGGCGGTGCCGGTGCC GAAGGGGCTCAGTCGGGGTACGCGGGGGCGGTGCCGGTGCC Direct Gain 0 0.946391817765094 0 0.852134048938751 prediction 0.892783635530188 Functional Gain - MAN2A1 ENSG00000112893 UTR5 Human protein_coding chr5:109025545 chr5:109025545 . . 0 21 hm5C_associated_SNPs_131608 0 0 1 0 0 Cytosol 0 0.500231643921095 0.704268097877502 0.000463287842189741 hm5C_site_51666 DeepMRMD:0.704268097877502;iRNA_m5C:0.000463287842189741 51667 chr5 79950736 79950736 1 + C G TGCT 79950736 - 79950716 79950756 41 GGCGGGAGCTGGGGGCGCTGGGGGCGCTGCGGCCGCTGCGG GGCGGGAGCTGGGGGCGCTGCGGGCGCTGCGGCCGCTGCGG Direct Gain 0 0.946380274482663 0 0.982776522636414 prediction 0.892760548965325 Functional Gain - MSH3 ENSG00000113318 CDS Human protein_coding chr5:79950736 chr5:79950736 nonsynonymous SNV 0.274 1 21 hm5C_associated_SNPs_131609 0 0 1 0 0 chromatin 0 0.500231643921122 0.965553045272828 0.000463287842244586 hm5C_site_51667 DeepMRMD:0.965553045272828;iRNA_m5C:0.000463287842244586 51668 chr1 65855081 65855081 1 + A G LUSC 65855081 - 65855061 65855101 41 GTGAGAAGAGAAGAGGATGCTGGGATTGACATCTTTTGTGC GTGAGAAGAGAAGAGGATGCCGGGATTGACATCTTTTGTGC Direct Gain 0 0.946370158608221 0 0.909923315048218 prediction 0.892740317216443 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65855081 chr1:65855081 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131610 0 0 0 0 0 Cytosol 0 0.500231643864105 0.819846630096436 0.000463287728209583 hm5C_site_51668 DeepMRMD:0.819846630096436;iRNA_m5C:0.000463287728209583 51669 chr2 182786990 182786990 1 + G C BLCA 182786990 + 182786970 182787010 41 CTCCAGATTTGGAAAGTTCTGAGGAAGTTGATGCAGCTGAA CTCCAGATTTGGAAAGTTCTCAGGAAGTTGATGCAGCTGAA Direct Gain 0 0.946344001204852 0 0.909540891647339 prediction 0.892688002409705 Functional Gain - SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182786990 chr2:182786990 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_131611 0 0 1 2 0 Ribosome 0 0.500231643930258 0.819081783294678 0.000463287860515971 hm5C_site_51669 DeepMRMD:0.819081783294678;iRNA_m5C:0.000463287860515971 51670 chr12 75784927 75784927 1 + T C rs142881216 75784927 + 75784907 75784947 41 CAAGGCCCTTCGCCCGGGAGTGGAGGGCCCAGTCCCTACCC CAAGGCCCTTCGCCCGGGAGCGGAGGGCCCAGTCCCTACCC Direct Gain 0 0.946334083678689 0 0.889575481414795 prediction 0.892668167357379 Functional Gain - GLIPR1L2 ENSG00000180481 CDS Human protein_coding chr12:75784927 chr12:75784927 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_131612 0 0 0 0 0 exosome 0 0.50023164392982 0.77915096282959 0.000463287859639117 hm5C_site_51670 DeepMRMD:0.77915096282959;iRNA_m5C:0.000463287859639117 51671 chr18 8813046 8813046 1 + A C rs11874468 8813046 + 8813026 8813066 41 AGAGCAAGGGGGCCTTGAAGAAGGAGAGAGAGGTGCACCAG AGAGCAAGGGGGCCTTGAAGCAGGAGAGAGAGGTGCACCAG Direct Gain 0 0.946323872445482 0 0.97746741771698 prediction 0.892647744890964 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8813046 chr18:8813046 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_131613 0 0 1 0 1 Nucleus 0 0.500231643921092 0.95493483543396 0.000463287842184856 hm5C_site_51671 DeepMRMD:0.95493483543396;iRNA_m5C:0.000463287842184856 51672 chr1 209849340 209849340 1 + A G rs142846097 209849340 - 209849320 209849360 41 CGCTGGTCTCCCACAGTTCCTAGGAGGCGTGCTGCCGGTTG CGCTGGTCTCCCACAGTTCCCAGGAGGCGTGCTGCCGGTTG Direct Gain 0 0.946302789422741 0 0.854151844978333 prediction 0.892605578845481 Functional Gain - G0S2 ENSG00000123689 CDS Human protein_coding chr1:209849340 chr1:209849340 stoploss 0.155 0 21 hm5C_associated_SNPs_131614 0 0 0 0 0 exosome 0 0.500231643921101 0.708303689956666 0.00046328784220262 hm5C_site_51672 DeepMRMD:0.708303689956666;iRNA_m5C:0.00046328784220262 51673 chr1 160325667 160325667 1 + G C rs116766004 160325667 + 160325647 160325687 41 CCACAGGCCCTGGCAGATGTGGCCACGGTGCTGGGACGTGC CCACAGGCCCTGGCAGATGTCGCCACGGTGCTGGGACGTGC Direct Gain 0 0.946281269523015 0 0.87562894821167 prediction 0.89256253904603 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160325667 chr1:160325667 synonymous SNV . 0 21 hm5C_associated_SNPs_131615 0 0 1 0 2 Endoplasmic reticulum 0 0.500231643945122 0.75125789642334 0.00046328789024308 hm5C_site_51673 DeepMRMD:0.75125789642334;iRNA_m5C:0.00046328789024308 51674 chr16 4897604 4897604 1 + C G rs533151151 4897604 - 4897584 4897624 41 GGGCGCGGAGTCCAAGACCCGGGGGCGGGGCGAGCCGCGAG GGGCGCGGAGTCCAAGACCCCGGGGCGGGGCGAGCCGCGAG Direct Gain 0 0.946272125696213 0 0.903656899929047 prediction 0.892544251392426 Functional Gain - GLYR1;UBN1 ENSG00000118900 UTR5 Human protein_coding chr16:4897604 chr16:4897604 . . 0 21 hm5C_associated_SNPs_131616 0 0 0 0 0 unknown 0 0.50023176378071 0.807313799858094 0.000463527561419319 hm5C_site_51674 DeepMRMD:0.807313799858094;iRNA_m5C:0.000463527561419319 51675 chr1 16863125 16863125 1 + T C rs61769541 16863125 + 16863105 16863145 41 GGGGAAGAAGAGGGTTTGACTGCGGTTCTCGACCCCCGGCG GGGGAAGAAGAGGGTTTGACCGCGGTTCTCGACCCCCGGCG Direct Gain 0 0.946270465762344 0 0.959523499011993 prediction 0.892540931524688 Functional Gain - LOC440570 ENSG00000233421 upstream Human lincRNA chr1:16863125 chr1:16863125 . . 0 21 hm5C_associated_SNPs_131617 0 0 0 0 0 unknown 0 0.500231643921092 0.919046998023986 0.000463287842184856 hm5C_site_51675 DeepMRMD:0.919046998023986;iRNA_m5C:0.000463287842184856 51676 chr17 40847736 40847736 1 + C G ESCA 40847736 - 40847716 40847756 41 GGGCACAGGCCGACCAGGCCGGGGGTAGTCGGGCAGGCGGT GGGCACAGGCCGACCAGGCCCGGGGTAGTCGGGCAGGCGGT Direct Gain 0 0.946269368272617 0 0.882596552371979 prediction 0.892538736545234 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40847736 chr17:40847736 nonsynonymous SNV 0.904 1 21 hm5C_associated_SNPs_131618 0 0 0 0 0 Cytosol 0 0.500231795684219 0.765193104743958 0.000463591368438099 hm5C_site_51676 DeepMRMD:0.765193104743958;iRNA_m5C:0.000463591368438099 51677 chr11 6898525 6898525 1 + T C rs150905922 6898525 + 6898505 6898545 41 CTTTCCTTTCTTGCTGATCCTGGGATCCTATGTCCGCATCC CTTTCCTTTCTTGCTGATCCCGGGATCCTATGTCCGCATCC Direct Gain 0 0.94626680145301 0 0.911467552185059 prediction 0.89253360290602 Functional Gain - OR10A4 ENSG00000170782 CDS Human protein_coding chr11:6898525 chr11:6898525 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131619 0 0 0 0 0 exosome 0 0.500231643920899 0.822935104370118 0.000463287841797388 hm5C_site_51677 DeepMRMD:0.822935104370118;iRNA_m5C:0.000463287841797388 51678 chr9 99212486 99212486 1 + A C rs570845103 99212486 + 99212466 99212506 41 GTGGCGGCGGAGCGGGCGGCATGGGTCCTGGCCGCCGGCTT GTGGCGGCGGAGCGGGCGGCCTGGGTCCTGGCCGCCGGCTT Direct Gain 0 0.946236451860899 0 0.866826295852661 prediction 0.892472903721799 Functional Gain - HABP4 ENSG00000130956 UTR5 Human protein_coding chr9:99212486 chr9:99212486 . . 0 21 hm5C_associated_SNPs_131620 0 0 1 0 0 chromatin 0 0.50023164392109 0.733652591705322 0.000463287842179083 hm5C_site_51678 DeepMRMD:0.733652591705322;iRNA_m5C:0.000463287842179083 51679 chr17 34136487 34136487 1 + C G rs562695145 34136487 - 34136467 34136507 41 GCGGCGGCCGGAGCTGTACTGAGGGCGGCGCGGCGGGCTGA GCGGCGGCCGGAGCTGTACTCAGGGCGGCGCGGCGGGCTGA Direct Gain 0 0.946223411563096 0 0.984472155570984 prediction 0.892446823126191 Functional Gain - TAF15 ENSG00000172660 UTR5 Human other chr17:34136487 chr17:34136487 . . 0 21 hm5C_associated_SNPs_131621 0 0 0 0 0 Cytosol 0 0.500231643921092 0.968944311141968 0.000463287842184856 hm5C_site_51679 DeepMRMD:0.968944311141968;iRNA_m5C:0.000463287842184856 51680 chr11 119029006 119029006 1 + C G HNSC 119029006 - 119028986 119029026 41 GACAGGAAGGTCCTCTTGAAGAGGATGCAGAACTGTGTGAG GACAGGAAGGTCCTCTTGAACAGGATGCAGAACTGTGTGAG Direct Gain 0 0.946214992567024 0 0.880505442619324 prediction 0.892429985134048 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119029006 chr11:119029006 synonymous SNV . 0 21 hm5C_associated_SNPs_131622 0 0 0 0 0 exosome 0 0.500231643960954 0.761010885238648 0.000463287921908195 hm5C_site_51680 DeepMRMD:0.761010885238648;iRNA_m5C:0.000463287921908195 51681 chr10 88469676 88469676 1 + C G LUSC 88469676 - 88469656 88469696 41 CGGCCACTGCGGGGCTGTAGGAAGAGGCCTGGGGCCTGGAA CGGCCACTGCGGGGCTGTAGCAAGAGGCCTGGGGCCTGGAA Direct Gain 0 0.946181456091149 0 0.924188494682312 prediction 0.892362912182297 Functional Gain - LDB3 ENSG00000122367 CDS Human protein_coding chr10:88469676 chr10:88469676 nonsynonymous SNV 0.277 2 21 hm5C_associated_SNPs_131623 0 0 0 0 0 nucleus 0 0.500231643921092 0.848376989364624 0.000463287842184856 hm5C_site_51681 DeepMRMD:0.848376989364624;iRNA_m5C:0.000463287842184856 51682 chr17 18144097 18144097 1 + C G rs57956221 18144097 - 18144077 18144117 41 CGTGAGGCCTCGTAGGGCTCGGGCAGTGGGCGGCCACGCCC CGTGAGGCCTCGTAGGGCTCCGGCAGTGGGCGGCCACGCCC Direct Gain 0 0.946181391204008 0 0.46793720126152 prediction 0.892362782408016 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18144097 chr17:18144097 synonymous SNV . 0 21 hm5C_associated_SNPs_131624 0 0 0 0 0 Cytosol 0 0.50023164391666 0 0.000463287833319725 hm5C_site_51682 DeepMRMD:0;iRNA_m5C:0.000463287833319725 51683 chr21 45820227 45820227 1 + T G HNSC 45820227 - 45820207 45820247 41 AGATGAGGCCGGTGAGGAGCAGCGGGAAGGCCAGCATGCAC AGATGAGGCCGGTGAGGAGCCGCGGGAAGGCCAGCATGCAC Direct Gain 0 0.946160519307589 0 0.754373073577881 prediction 0.892321038615179 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45820227 chr21:45820227 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_131625 0 0 0 0 0 Ribosome 0 0.500231643920645 0.508746147155762 0.000463287841290239 hm5C_site_51683 DeepMRMD:0.508746147155762;iRNA_m5C:0.000463287841290239 51684 chr12 55945682 55945682 1 + G C CESC 55945682 + 55945662 55945702 41 TACATTATCAGGACTATTCTGAGGATCCCTTCTGCCCAGCA TACATTATCAGGACTATTCTCAGGATCCCTTCTGCCCAGCA Direct Gain 0 0.946120379779019 0 0.968291223049164 prediction 0.892240759558039 Functional Gain - OR6C4 ENSG00000179626 CDS Human protein_coding chr12:55945682 chr12:55945682 synonymous SNV . 0 21 hm5C_associated_SNPs_131626 0 0 0 0 0 unknown 0 0.500231643921092 0.936582446098328 0.000463287842184856 hm5C_site_51684 DeepMRMD:0.936582446098328;iRNA_m5C:0.000463287842184856 51685 chr10 1061734 1061734 1 + T C HNSC 1061734 + 1061714 1061754 41 AGAAGATCCCGGAGCATCACTAGGAAAAGAAAGCGGGAAGA AGAAGATCCCGGAGCATCACCAGGAAAAGAAAGCGGGAAGA Direct Gain 0 0.946109509321359 0 0.899217903614044 prediction 0.892219018642719 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1061734 chr10:1061734 synonymous SNV . 0 21 hm5C_associated_SNPs_131627 0 0 1 1 1 Cytosol 0 0.500231643921092 0.798435807228088 0.000463287842183746 hm5C_site_51685 DeepMRMD:0.798435807228088;iRNA_m5C:0.000463287842183746 51686 chr8 64697360 64697360 1 + T C rs182843179 64697360 + 64697340 64697380 41 TCCCTGCCTGACAATGATGCTGGGAGAAGATGTGCCGGTGC TCCCTGCCTGACAATGATGCCGGGAGAAGATGTGCCGGTGC Direct Gain 0 0.946101684364467 0 0.874065279960632 prediction 0.892203368728934 Functional Gain - LINC01289 ENSG00000253734 ncRNA_exonic Human lincRNA chr8:64697360 chr8:64697360 . . 0 21 hm5C_associated_SNPs_131628 0 0 0 0 0 unknown 0 0.500231644540203 0.748130559921264 0.000463289080405049 hm5C_site_51686 DeepMRMD:0.748130559921264;iRNA_m5C:0.000463289080405049 51687 chr8 99440610 99440610 1 + T C COAD 99440610 + 99440590 99440630 41 TAGAGCCCGAGCAGGAGAAGTGGGACGAGCAGAGTGACCAG TAGAGCCCGAGCAGGAGAAGCGGGACGAGCAGAGTGACCAG Direct Gain 0 0.946095408255115 0 0.856118679046631 prediction 0.89219081651023 Functional Gain - KCNS2 ENSG00000156486 CDS Human protein_coding chr8:99440610 chr8:99440610 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131629 0 0 0 0 0 exosome 0 0.50023164392016 0.712237358093262 0.000463287840319238 hm5C_site_51687 DeepMRMD:0.712237358093262;iRNA_m5C:0.000463287840319238 51688 chr11 7110832 7110832 1 + C G rs545902291 7110832 - 7110812 7110852 41 CGACGGCGCGGCCCTCTTGGGGGGTGGGCCGACCCTGCGCG CGACGGCGCGGCCCTCTTGGCGGGTGGGCCGACCCTGCGCG Direct Gain 0 0.946087203994846 0 0.948821723461151 prediction 0.892174407989692 Functional Gain - RBMXL2 ENSG00000170748 CDS Human protein_coding chr11:7110832 chr11:7110832 nonsynonymous SNV 0.025 1 21 hm5C_associated_SNPs_131630 0 0 0 0 0 exosome 0 0.500231644009557 0.897643446922302 0.000463288019114882 hm5C_site_51688 DeepMRMD:0.897643446922302;iRNA_m5C:0.000463288019114882 51689 chr1 19658479 19658479 1 + C G rs61766664 19658479 - 19658459 19658499 41 TCACACAGGGCACTCCCCAGGGGGAGGGGCCATGTCTTCCC TCACACAGGGCACTCCCCAGCGGGAGGGGCCATGTCTTCCC Direct Gain 0 0.946085336835627 0 0.901382327079773 prediction 0.892170673671253 Functional Gain - PQLC2;CAPZB ENSG00000040487;ENSG00000077549 intergenic Human other chr1:19658479 chr1:19658479 . . 0 21 hm5C_associated_SNPs_131631 0 0 0 0 0 unknown 0 0.5002316439051 0.802764654159546 0.000463287810200219 hm5C_site_51689 DeepMRMD:0.802764654159546;iRNA_m5C:0.000463287810200219 51690 chr1 248344149 248344149 1 + C G HNSC 248344149 - 248344129 248344169 41 GTTGCGGAGGCTGTAGATGAGGGGATTCAGCATGGGAGTGA GTTGCGGAGGCTGTAGATGACGGGATTCAGCATGGGAGTGA Direct Gain 0 0.946068142216194 0 0.520257651805878 prediction 0.892136284432389 Functional Gain - OR2M2 ENSG00000198601 CDS Human protein_coding chr1:248344149 chr1:248344149 nonsynonymous SNV 0.013 3 21 hm5C_associated_SNPs_131632 0 0 0 0 0 exosome 0 0.500231643777202 0.040515303611756 0.00046328755440439 hm5C_site_51690 DeepMRMD:0.040515303611756;iRNA_m5C:0.00046328755440439 51691 chr11 130013345 130013345 1 + T C rs534986760 130013345 + 130013325 130013365 41 GGAGCAGATGCAGATTTAGGTGGCAGGGAGCGCGGCAGCCC GGAGCAGATGCAGATTTAGGCGGCAGGGAGCGCGGCAGCCC Direct Gain 0 0.946044833518536 0 0.827941656112671 prediction 0.892089667037072 Functional Gain - APLP2 ENSG00000084234 UTR3 Human protein_coding chr11:130013345 chr11:130013345 . . 0 21 hm5C_associated_SNPs_131633 0 0 1 0 0 Endoplasmic reticulum 0 0.500231643921092 0.655883312225342 0.000463287842184856 hm5C_site_51691 DeepMRMD:0.655883312225342;iRNA_m5C:0.000463287842184856 51692 chr2 27121559 27121559 1 + C G LUAD 27121559 - 27121539 27121579 41 TGGTGGAAGTGGGTGCTGGTGTCGATGCCACCAGGGATCAC TGGTGGAAGTGGGTGCTGGTCTCGATGCCACCAGGGATCAC Direct Gain 0 0.946037854603964 0 0.774055600166321 prediction 0.892075709207928 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27121559 chr2:27121559 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_131634 0 0 0 0 0 Ribosome 0 0.500231431734536 0.548111200332642 0.00046286346907265 hm5C_site_51692 DeepMRMD:0.548111200332642;iRNA_m5C:0.00046286346907265 51693 chr3 184001608 184001608 1 + G C CESC 184001608 + 184001588 184001628 41 CTGGATTACATGGAGGAACTGGGGATGCTGCTGGGTGGGCG CTGGATTACATGGAGGAACTCGGGATGCTGCTGGGTGGGCG Direct Gain 0 0.946036396818376 0 0.94338047504425 prediction 0.892072793636751 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184001608 chr3:184001608 synonymous SNV . 0 21 hm5C_associated_SNPs_131635 0 0 0 0 1 Ribosome 0 0.500231643921124 0.8867609500885 0.000463287842247917 hm5C_site_51693 DeepMRMD:0.8867609500885;iRNA_m5C:0.000463287842247917 51694 chr14 91642340 91642340 1 + G C rs75931548 91642340 + 91642320 91642360 41 ATGCCATGGTGTGTCCCCCAGGGGAGGTTCCAGTGTTCTGG ATGCCATGGTGTGTCCCCCACGGGAGGTTCCAGTGTTCTGG Direct Gain 0 0.94602724271941 0 0.800633668899536 prediction 0.892054485438819 Functional Gain - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91642340 chr14:91642340 nonsynonymous SNV 0.266 0 21 hm5C_associated_SNPs_131636 0 0 1 0 2 chromatin 0 0.500231643921091 0.601267337799072 0.000463287842181748 hm5C_site_51694 DeepMRMD:0.601267337799072;iRNA_m5C:0.000463287842181748 51695 chr16 67197653 67197653 1 + C G SKCM 67197653 - 67197633 67197673 41 GGGTATAGGTGCGCAGGCGCGGGCAGTGCGCGCGGAAGGCG GGGTATAGGTGCGCAGGCGCCGGCAGTGCGCGCGGAAGGCG Direct Gain 0 0.946010660891828 0 0.867774844169617 prediction 0.892021321783656 Functional Gain - FBXL8 ENSG00000135722;ENSG00000265690 CDS Human other chr16:67197653 chr16:67197653 nonsynonymous SNV 0.988 4 21 hm5C_associated_SNPs_131637 0 0 0 0 0 exosome 0 0.500231643921129 0.735549688339234 0.000463287842258575 hm5C_site_51695 DeepMRMD:0.735549688339234;iRNA_m5C:0.000463287842258575 51696 chr15 32460288 32460288 1 + A G LUSC 32460288 - 32460268 32460308 41 GTACAGCAGGTTCCCGTTGCTGGCGGGCGGCGGCGCCACGG GTACAGCAGGTTCCCGTTGCCGGCGGGCGGCGGCGCCACGG Direct Gain 0 0.945987391191565 0 0.969335317611694 prediction 0.891974782383129 Functional Gain - CHRNA7 ENSG00000175344 CDS Human protein_coding chr15:32460288 chr15:32460288 nonsynonymous SNV 0.037 0 21 hm5C_associated_SNPs_131638 0 0 0 0 0 Nucleus 0 0.500231643919664 0.938670635223388 0.000463287839328252 hm5C_site_51696 DeepMRMD:0.938670635223388;iRNA_m5C:0.000463287839328252 51697 chr15 66625864 66625864 1 + T C rs56378753 66625864 + 66625844 66625884 41 GGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACAC GGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAC Direct Gain 0 0.945983189928159 0 0.797939896583557 prediction 0.891966379856318 Functional Gain - DIS3L ENSG00000166938 UTR3 Human protein_coding chr15:66625864 chr15:66625864 . . 0 21 hm5C_associated_SNPs_131639 0 0 0 0 0 chromatin 0 0.500231643921088 0.595879793167114 0.000463287842176197 hm5C_site_51697 DeepMRMD:0.595879793167114;iRNA_m5C:0.000463287842176197 51698 chr3 129253486 129253486 1 + T C rs60645924 129253486 + 129253466 129253506 41 GTTCCCAATGAGGGTGAGATTGGGCCTGGGGTCTCACCCCT GTTCCCAATGAGGGTGAGATCGGGCCTGGGGTCTCACCCCT Direct Gain 0 0.945979841478533 0 0.915516018867493 prediction 0.891959682957066 Functional Gain - RHO ENSG00000163914 UTR3 Human protein_coding chr3:129253486 chr3:129253486 . . 0 21 hm5C_associated_SNPs_131640 2 0 0 0 0 Cytosol 0 0.500231643921092 0.831032037734986 0.000463287842184856 hm5C_site_51698 DeepMRMD:0.831032037734986;iRNA_m5C:0.000463287842184856 Retinitis Pigmentosa, Dominant/Recessive Retinitis Pigmentosa, Dominant/Recessive 51699 chr16 680695 680695 1 + A G rs4984903 680695 - 680675 680715 41 GACCCCAGGCTCCTATGCCATGGGGGTGGCAGGCACGGGCC GACCCCAGGCTCCTATGCCACGGGGGTGGCAGGCACGGGCC Direct Gain 0 0.945968508171933 0 0.912848055362701 prediction 0.891937016343865 Functional Gain - WFIKKN1 ENSG00000127578 upstream Human protein_coding chr16:680695 chr16:680695 . . 0 21 hm5C_associated_SNPs_131641 0 0 0 0 0 exosome 0 0.500237116270937 0.825696110725402 0.000474232541874509 hm5C_site_51699 DeepMRMD:0.825696110725402;iRNA_m5C:0.000474232541874509 51700 chr11 89819619 89819619 1 + A C rs571134336 89819619 + 89819599 89819639 41 AGGAAAAACTTGCTCGATTCAGGGAAGAACACCCTGATTTA AGGAAAAACTTGCTCGATTCCGGGAAGAACACCCTGATTTA Direct Gain 0 0.945954773098046 0 0.891449928283691 prediction 0.891909546196092 Functional Gain - UBTFL1 ENSG00000255009 ncRNA_exonic Human protein_coding chr11:89819619 chr11:89819619 . . 0 21 hm5C_associated_SNPs_131642 0 0 0 0 0 unknown 0 0.50023164391433 0.782899856567382 0.000463287828660119 hm5C_site_51700 DeepMRMD:0.782899856567382;iRNA_m5C:0.000463287828660119 51701 chrX 16773177 16773177 1 + G C BLCA 16773177 + 16773157 16773197 41 AGCAGGCCGCAGGGAAGGAGGAGAAGAGCAATGGCAGAGAG AGCAGGCCGCAGGGAAGGAGCAGAAGAGCAATGGCAGAGAG Direct Gain 0 0.945947142224573 0 0.533132195472717 prediction 0.891894284449146 Functional Gain - SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16773177 chrX:16773177 nonsynonymous SNV 0.555 0 21 hm5C_associated_SNPs_131643 0 0 1 0 1 Ribosome 0 0.500231643921131 0.0662643909454339 0.00046328784226124 hm5C_site_51701 DeepMRMD:0.0662643909454339;iRNA_m5C:0.00046328784226124 51702 chr14 65209878 65209878 1 + C G LUSC 65209878 - 65209858 65209898 41 CTGAAGGTCTCTGTGGGGCTGAGGGGGCTCCGGGCGGAGGG CTGAAGGTCTCTGTGGGGCTCAGGGGGCTCCGGGCGGAGGG Direct Gain 0 0.945925832230585 0 0.877082347869873 prediction 0.891851664461169 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65209878 chr14:65209878 synonymous SNV . 0 21 hm5C_associated_SNPs_131644 0 0 0 0 0 Nucleus 0 0.500231643950902 0.754164695739746 0.000463287901803389 hm5C_site_51702 DeepMRMD:0.754164695739746;iRNA_m5C:0.000463287901803389 51703 chr11 117241868 117241868 1 + A G UCEC 117241868 - 117241848 117241888 41 GCTGGAGGGCTTGCAGGGAGTAGGGGGACCGGCAGCATCTG GCTGGAGGGCTTGCAGGGAGCAGGGGGACCGGCAGCATCTG Direct Gain 0 0.945925300852035 0 0.875085711479187 prediction 0.891850601704071 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117241868 chr11:117241868 nonsynonymous SNV 0.011 0 21 hm5C_associated_SNPs_131645 0 0 0 0 0 Cytosol 0 0.500231643921093 0.750171422958374 0.000463287842185078 hm5C_site_51703 DeepMRMD:0.750171422958374;iRNA_m5C:0.000463287842185078 51704 chr5 76249946 76249946 1 + G C LUSC 76249946 + 76249926 76249966 41 CCTTCTTCATCAGCGAGCCCGAGGAGTTCATTACCATCCAC CCTTCTTCATCAGCGAGCCCCAGGAGTTCATTACCATCCAC Direct Gain 0 0.945913670501485 0 0.804888129234314 prediction 0.89182734100297 Functional Gain - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249946 chr5:76249946 nonsynonymous SNV 0.987 0 21 hm5C_associated_SNPs_131646 0 0 0 0 1 Cytosol 0 0.500231643921093 0.609776258468628 0.000463287842185078 hm5C_site_51704 DeepMRMD:0.609776258468628;iRNA_m5C:0.000463287842185078 51705 chr7 139661880 139661880 1 + G C BRCA 139661880 + 139661860 139661900 41 CTATGGCCAGGCCTTTGACTGTGGATGAGATTGTGGGCCAG CTATGGCCAGGCCTTTGACTCTGGATGAGATTGTGGGCCAG Direct Gain 0 0.945913012332131 0 0.941693544387817 prediction 0.891826024664262 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139661880 chr7:139661880 nonsynonymous SNV 0.178 0 21 hm5C_associated_SNPs_131647 0 0 0 0 0 Endoplasmic reticulum 0 0.50023164391744 0.883387088775634 0.000463287834879145 hm5C_site_51705 DeepMRMD:0.883387088775634;iRNA_m5C:0.000463287834879145 51706 chr12 100813864 100813864 1 + G C BLCA 100813864 + 100813844 100813884 41 GAAGGAATGGAAAGGACAGAGAGGAGCGACCCTTGATGAGG GAAGGAATGGAAAGGACAGACAGGAGCGACCCTTGATGAGG Direct Gain 0 0.945871912243032 0 0.774201393127441 prediction 0.891743824486064 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100813864 chr12:100813864 nonsynonymous SNV 0.652 2 21 hm5C_associated_SNPs_131648 0 0 0 0 0 exosome 0 0.500231643920638 0.548402786254882 0.000463287841276916 hm5C_site_51706 DeepMRMD:0.548402786254882;iRNA_m5C:0.000463287841276916 51707 chr14 23315134 23315134 1 + C G rs17881739 23315134 - 23315114 23315154 41 ACCAGGAGCAGCAGCAGCACGGGCAGCACCACGGCAGCCGC ACCAGGAGCAGCAGCAGCACCGGCAGCACCACGGCAGCCGC Direct Gain 0 0.945864102365853 0 0.832175433635712 prediction 0.891728204731707 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23315134 chr14:23315134 synonymous SNV . 0 21 hm5C_associated_SNPs_131649 0 0 0 0 0 cytosol 0 0.500231643934369 0.664350867271424 0.000463287868737172 hm5C_site_51707 DeepMRMD:0.664350867271424;iRNA_m5C:0.000463287868737172 51708 chr10 54076649 54076649 1 + A C rs74711339 54076649 + 54076629 54076669 41 ACCTTCATCAACTCAATCCTAAGGATATACAAGTTCTGTGG ACCTTCATCAACTCAATCCTCAGGATATACAAGTTCTGTGG Direct Gain 0 0.945858429247482 0 0.922470688819885 prediction 0.891716858494964 Functional Gain - DKK1 ENSG00000107984 UTR3 Human protein_coding chr10:54076649 chr10:54076649 . . 0 21 hm5C_associated_SNPs_131650 0 0 1 0 0 exosome 0 0.500231643921091 0.84494137763977 0.000463287842182858 hm5C_site_51708 DeepMRMD:0.84494137763977;iRNA_m5C:0.000463287842182858 51709 chr3 180685889 180685889 1 + G C CESC 180685889 + 180685869 180685909 41 AAACGGAATCTGAGCGTAAAGACGAGCTGAGTGATTGGTCA AAACGGAATCTGAGCGTAAACACGAGCTGAGTGATTGGTCA Direct Gain 0 0.945838819410042 0 0.477791875600815 prediction 0.891677638820085 Functional Gain - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180685889 chr3:180685889 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_131651 0 0 1 0 1 Exosome 0 0.500231674989144 0 0.000463349978287786 hm5C_site_51709 DeepMRMD:0;iRNA_m5C:0.000463349978287786 51710 chr1 161476251 161476251 1 + T C LUAD 161476251 + 161476231 161476271 41 TCCATTCAGTGGTTCCACAATGGGAATCTCATTCCCACCCA TCCATTCAGTGGTTCCACAACGGGAATCTCATTCCCACCCA Direct Gain 0 0.945838238694802 0 0.793916940689087 prediction 0.891676477389604 Functional Gain - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161476251 chr1:161476251 synonymous SNV . 0 21 hm5C_associated_SNPs_131652 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921094 0.587833881378174 0.000463287842187965 hm5C_site_51710 DeepMRMD:0.587833881378174;iRNA_m5C:0.000463287842187965 51711 chr16 20442583 20442583 1 + G C CHOL 20442583 + 20442563 20442603 41 GTCCTGCCTCCTGGAGAAGAGGGGAATGTTGCCGTCCGTAT GTCCTGCCTCCTGGAGAAGACGGGAATGTTGCCGTCCGTAT Direct Gain 0 0.945834542696506 0 0.826837122440338 prediction 0.891669085393011 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20442583 chr16:20442583 nonsynonymous SNV 0.994 1 21 hm5C_associated_SNPs_131653 0 0 0 0 2 cytosol 0 0.500231676587884 0.653674244880676 0.000463353175768066 hm5C_site_51711 DeepMRMD:0.653674244880676;iRNA_m5C:0.000463353175768066 51712 chr2 24964987 24964987 1 + T C COAD 24964987 + 24964967 24965007 41 CAGAGGCATGACAGGAAACATAGGAGGACAGTTTGGCACTG CAGAGGCATGACAGGAAACACAGGAGGACAGTTTGGCACTG Direct Gain 0 0.945834339017192 0 0.76566743850708 prediction 0.891668678034383 Functional Gain - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24964987 chr2:24964987 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131654 0 0 1 0 1 Cytosol 0 0.50023164392024 0.53133487701416 0.000463287840479776 hm5C_site_51712 DeepMRMD:0.53133487701416;iRNA_m5C:0.000463287840479776 51713 chr10 76938857 76938857 1 + T C rs143609631 76938857 + 76938837 76938877 41 TGCCTGTAATCGCAGCACTTTGGGAGGCTAAGGCAGGAGGA TGCCTGTAATCGCAGCACTTCGGGAGGCTAAGGCAGGAGGA Direct Gain 0 0.945819715163105 0 0.925052106380463 prediction 0.89163943032621 Functional Gain - SAMD8 ENSG00000156671 UTR3 Human protein_coding chr10:76938857 chr10:76938857 . . 0 21 hm5C_associated_SNPs_131655 0 0 0 0 0 chromatin 0 0.50023164392346 0.850104212760926 0.000463287846919513 hm5C_site_51713 DeepMRMD:0.850104212760926;iRNA_m5C:0.000463287846919513 51714 chr15 33023098 33023098 1 + C G rs2280738 33023098 - 33023078 33023118 41 GACTCCAGCACCTCCTCCCCGGGCATGGCAGTGCCCCGCCC GACTCCAGCACCTCCTCCCCCGGCATGGCAGTGCCCCGCCC Direct Gain 0 0.945812819248042 0 0.927231431007385 prediction 0.891625638496083 Functional Gain - GREM1 ENSG00000166923 CDS Human protein_coding chr15:33023098 chr15:33023098 synonymous SNV . 0 21 hm5C_associated_SNPs_131656 1 0 0 0 0 exosome 0 0.5002316439211 0.85446286201477 0.000463287842200399 hm5C_site_51714 DeepMRMD:0.85446286201477;iRNA_m5C:0.000463287842200399 not specified not specified 51715 chr17 55079471 55079471 1 + T C rs12940187 55079471 + 55079451 55079491 41 TGTACAGTGACCCTAAATCTTTGGAAACATCTGCTTTTGTC TGTACAGTGACCCTAAATCTCTGGAAACATCTGCTTTTGTC Direct Gain 0 0.945808017722142 0 0.716887712478638 prediction 0.891616035444284 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55079471 chr17:55079471 synonymous SNV . 0 21 hm5C_associated_SNPs_131657 0 0 0 0 2 Ribosome 0 0.500231643967343 0.433775424957276 0.000463287934685086 hm5C_site_51715 DeepMRMD:0.433775424957276;iRNA_m5C:0.000463287934685086 51716 chr7 128846405 128846405 1 + T C LUAD 128846405 + 128846385 128846425 41 AATCGGCCTGGTGCTCATCGTGGGAGGCTACTTCCTCATCC AATCGGCCTGGTGCTCATCGCGGGAGGCTACTTCCTCATCC Direct Gain 0 0.945805595729274 0 0.901997804641724 prediction 0.891611191458548 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128846405 chr7:128846405 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131658 0 0 1 0 1 cytosol 0 0.500231643921178 0.803995609283448 0.000463287842356053 hm5C_site_51716 DeepMRMD:0.803995609283448;iRNA_m5C:0.000463287842356053 51717 chrX 26158077 26158077 1 + T C HNSC 26158077 + 26158057 26158097 41 GCAGCCAGGGCTCATACTGCTGCCATGGCAAATGCACGTTC GCAGCCAGGGCTCATACTGCCGCCATGGCAAATGCACGTTC Direct Gain 0 0.945805354157376 0 0.37863028049469 prediction 0.891610708314752 Functional Gain - MAGEB18 ENSG00000176774 CDS Human protein_coding chrX:26158077 chrX:26158077 synonymous SNV . 0 21 hm5C_associated_SNPs_131659 0 0 0 0 1 unknown 0 0.500231532764516 0 0.000463065529032969 hm5C_site_51717 DeepMRMD:0;iRNA_m5C:0.000463065529032969 51718 chr16 1551468 1551468 1 + C G PCPG 1551468 - 1551448 1551488 41 GCGCCGTCACCCGCAGGCTGGGGGGAGGCCAAGGCCAGCAG GCGCCGTCACCCGCAGGCTGCGGGGAGGCCAAGGCCAGCAG Direct Gain 0 0.945798565354454 0 0.87529581785202 prediction 0.891597130708907 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551468 chr16:1551468 synonymous SNV . 0 21 hm5C_associated_SNPs_131660 0 0 0 0 0 Cytosol 0 0.500231643288541 0.75059163570404 0.000463286577082611 hm5C_site_51718 DeepMRMD:0.75059163570404;iRNA_m5C:0.000463286577082611 51719 chr6 26184336 26184336 1 + G C BLCA 26184336 + 26184316 26184356 41 CCGTGCGCCTGCTGCTTCCCGGGGAGCTGGCCAAGCACGCT CCGTGCGCCTGCTGCTTCCCCGGGAGCTGGCCAAGCACGCT Direct Gain 0 0.945787529300233 0 0.911485075950623 prediction 0.891575058600465 Functional Gain - HIST1H2BE ENSG00000197697 CDS Human other chr6:26184336 chr6:26184336 nonsynonymous SNV 0.993 0 21 hm5C_associated_SNPs_131661 0 0 0 0 0 nucleoplasm 0 0.500231643921092 0.822970151901246 0.000463287842183302 hm5C_site_51719 DeepMRMD:0.822970151901246;iRNA_m5C:0.000463287842183302 51720 chr17 74001729 74001729 1 + A C rs2069539 74001729 + 74001709 74001749 41 AATAGAGGCACAGATGCTCCATGCACGAGGGGTCCCCGGGC AATAGAGGCACAGATGCTCCCTGCACGAGGGGTCCCCGGGC Direct Gain 0 0.945771060791715 0 0.789588809013367 prediction 0.89154212158343 Functional Gain - TEN1-CDK3 ENSG00000261408 ncRNA_exonic Human protein_coding chr17:74001729 chr17:74001729 . . 0 21 hm5C_associated_SNPs_131662 0 0 0 0 0 exosome 0 0.500231601012685 0.579177618026734 0.000463202025369203 hm5C_site_51720 DeepMRMD:0.579177618026734;iRNA_m5C:0.000463202025369203 51721 chr9 97062893 97062893 1 + T C GBM 97062893 + 97062873 97062913 41 CCCTTCGTGTGTCCTGAGTGTGGGAGAGGCTTTTGCCAGAA CCCTTCGTGTGTCCTGAGTGCGGGAGAGGCTTTTGCCAGAA Direct Gain 0 0.945764743335175 0 0.864022970199585 prediction 0.891529486670349 Functional Gain - ZNF169 ENSG00000175787 CDS Human protein_coding chr9:97062893 chr9:97062893 synonymous SNV . 0 21 hm5C_associated_SNPs_131663 0 0 0 0 0 Cytosol 0 0.500231643959135 0.72804594039917 0.000463287918269994 hm5C_site_51721 DeepMRMD:0.72804594039917;iRNA_m5C:0.000463287918269994 51722 chr11 4903728 4903728 1 + G C COAD 4903728 + 4903708 4903748 41 ACCTTGGATCAGCAGTTTTTGGGGACTGTTTCTTCAGCTCT ACCTTGGATCAGCAGTTTTTCGGGACTGTTTCTTCAGCTCT Direct Gain 0 0.945763905995431 0 0.875048458576202 prediction 0.891527811990863 Functional Gain - OR51T1 ENSG00000176900 CDS Human protein_coding chr11:4903728 chr11:4903728 nonsynonymous SNV 0.822 1 21 hm5C_associated_SNPs_131664 0 0 0 0 0 unknown 0 0.500231685305101 0.750096917152404 0.000463370610202851 hm5C_site_51722 DeepMRMD:0.750096917152404;iRNA_m5C:0.000463370610202851 51723 chr11 64950299 64950299 1 + G C CESC 64950299 + 64950279 64950319 41 AGTACCTGGGCCAGGATTATGAGCAGCTGCGGGTGCGATGC AGTACCTGGGCCAGGATTATCAGCAGCTGCGGGTGCGATGC Direct Gain 0 0.945757314259426 0 0.858526289463043 prediction 0.891514628518852 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950299 chr11:64950299 nonsynonymous SNV 0.793 1 21 hm5C_associated_SNPs_131665 0 0 1 0 0 Ribosome 0 0.500231644012299 0.717052578926086 0.000463288024597608 hm5C_site_51723 DeepMRMD:0.717052578926086;iRNA_m5C:0.000463288024597608 51724 chr17 40714701 40714701 1 + C G CESC 40714701 - 40714681 40714721 41 GGTCAGGATGGAGGCCAGGCGAGGGGCTAGGGAGGCCAGCG GGTCAGGATGGAGGCCAGGCCAGGGGCTAGGGAGGCCAGCG Direct Gain 0 0.945738481581852 0 0.906999409198761 prediction 0.891476963163704 Functional Gain - COASY ENSG00000068120 CDS Human protein_coding chr17:40714701 chr17:40714701 nonsynonymous SNV 0.902 4 21 hm5C_associated_SNPs_131666 0 0 0 0 0 Ribosome 0 0.500231643921087 0.813998818397522 0.00046328784217442 hm5C_site_51724 DeepMRMD:0.813998818397522;iRNA_m5C:0.00046328784217442 51725 chr6 25726482 25726482 1 + C G LUSC 25726482 - 25726462 25726502 41 AGCTAGCGATCCGCAATGATGAGGAACTCAATAAGCTTTTG AGCTAGCGATCCGCAATGATCAGGAACTCAATAAGCTTTTG Direct Gain 0 0.945735895591047 0 0.769786477088928 prediction 0.891471791182093 Functional Gain - HIST1H2AA ENSG00000164508 CDS Human protein_coding chr6:25726482 chr6:25726482 nonsynonymous SNV 0.041 4 21 hm5C_associated_SNPs_131667 0 0 1 0 0 unknown 0 0.500231644015568 0.539572954177856 0.000463288031136599 hm5C_site_51725 DeepMRMD:0.539572954177856;iRNA_m5C:0.000463288031136599 51726 chr6 1313401 1313401 1 + C G TGCT 1313401 - 1313381 1313421 41 GTGTAGCTGCCGCGGAAAAAGGGGAACTTGCCCATGAGGTA GTGTAGCTGCCGCGGAAAAACGGGAACTTGCCCATGAGGTA Direct Gain 0 0.945707457142125 0 0.818178534507751 prediction 0.89141491428425 Functional Gain - FOXQ1 ENSG00000164379 CDS Human protein_coding chr6:1313401 chr6:1313401 synonymous SNV . 0 21 hm5C_associated_SNPs_131668 0 0 0 0 0 exosome 0 0.50023164392177 0.636357069015502 0.000463287843539328 hm5C_site_51726 DeepMRMD:0.636357069015502;iRNA_m5C:0.000463287843539328 51727 chr5 50685569 50685569 1 + G C CESC 50685569 + 50685549 50685589 41 GCGTGCGGACTGTGCTGAACGAGAAGCAGCTGCACACCTTG GCGTGCGGACTGTGCTGAACCAGAAGCAGCTGCACACCTTG Direct Gain 0 0.945696828964296 0 0.570117175579071 prediction 0.891393657928591 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685569 chr5:50685569 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_131669 0 0 0 0 1 exosome 0 0.500280970824864 0.140234351158142 0.000561941649727338 hm5C_site_51727 DeepMRMD:0.140234351158142;iRNA_m5C:0.000561941649727338 51728 chr17 74075587 74075587 1 + T C rs372532252 74075587 + 74075567 74075607 41 AGCATCCAGATCCCGAACAATGGGAGTGCGCCCCTGCTCGT AGCATCCAGATCCCGAACAACGGGAGTGCGCCCCTGCTCGT Direct Gain 0 0.945694500838885 0 0.856732845306396 prediction 0.89138900167777 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075587 chr17:74075587 synonymous SNV . 0 21 hm5C_associated_SNPs_131670 0 0 0 0 2 chromatin 0 0.500237643472815 0.713465690612792 0.000475286945629705 hm5C_site_51728 DeepMRMD:0.713465690612792;iRNA_m5C:0.000475286945629705 51729 chr12 112460147 112460147 1 + T G rs10774648 112460147 - 112460127 112460167 41 CCGGCCAGGGCGTCGTATACAGGCAGGCAACCAGGCATACC CCGGCCAGGGCGTCGTATACCGGCAGGCAACCAGGCATACC Direct Gain 0 0.945693851777696 0 0.842833578586578 prediction 0.891387703555393 Functional Gain - ERP29 ENSG00000089248 CDS Human protein_coding chr12:112460147 chr12:112460147 synonymous SNV . 0 21 hm5C_associated_SNPs_131671 0 0 0 0 0 Ribosome 0 0.500241354117597 0.685667157173156 0.000482708235194362 hm5C_site_51729 DeepMRMD:0.685667157173156;iRNA_m5C:0.000482708235194362 51730 chr12 24365384 24365384 1 + T C UCEC 24365384 + 24365364 24365404 41 CTACAGAAGACCTGGATGTGTAGGAGCTAAGACACACTCCA CTACAGAAGACCTGGATGTGCAGGAGCTAAGACACACTCCA Direct Gain 0 0.945667129924365 0 0.938430905342102 prediction 0.89133425984873 Functional Gain - MIR920 ENSG00000216192 ncRNA_exonic Human miRNA chr12:24365384 chr12:24365384 . . 0 21 hm5C_associated_SNPs_131672 0 0 0 0 0 unknown 0 0.50023164392427 0.876861810684204 0.000463287848539995 hm5C_site_51730 DeepMRMD:0.876861810684204;iRNA_m5C:0.000463287848539995 51731 chr19 50104804 50104804 1 + C G CESC 50104804 - 50104784 50104824 41 GGGTGGCGGAGGCTGAGGCTGAGGAGTCGGGGCAGGAGGTG GGGTGGCGGAGGCTGAGGCTCAGGAGTCGGGGCAGGAGGTG Direct Gain 0 0.945658754575038 0 0.921655654907227 prediction 0.891317509150076 Functional Gain - PRR12 ENSG00000126464 CDS Human protein_coding chr19:50104804 chr19:50104804 nonsynonymous SNV 0.117 0 21 hm5C_associated_SNPs_131673 0 0 0 0 0 Exosome 0 0.500231644445216 0.843311309814454 0.000463288890431679 hm5C_site_51731 DeepMRMD:0.843311309814454;iRNA_m5C:0.000463288890431679 51732 chrX 69650934 69650934 1 + C G rs747608548 69650934 - 69650914 69650954 41 GCTTATAACCGGGAGGCTGAGGGGGGCAGTGGCTCAGGCCT GCTTATAACCGGGAGGCTGACGGGGGCAGTGGCTCAGGCCT Direct Gain 0 0.945657672426922 0 0.914211630821228 prediction 0.891315344853843 Functional Gain - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69650934 chrX:69650934 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_131674 0 0 0 0 0 exosome 0 0.500231643921092 0.828423261642456 0.000463287842183968 hm5C_site_51732 DeepMRMD:0.828423261642456;iRNA_m5C:0.000463287842183968 51733 chr20 62906157 62906157 1 + G C rs1060285 62906157 + 62906137 62906177 41 ACCAAGTGGTAGGGCTAAAAGAACAACAGCCTTTTTGGTAG ACCAAGTGGTAGGGCTAAAACAACAACAGCCTTTTTGGTAG Direct Gain 0 0.945656178917263 0 0.827930450439453 prediction 0.891312357834526 Functional Gain - PCMTD2 ENSG00000203880 UTR3 Human protein_coding chr20:62906157 chr20:62906157 . . 0 21 hm5C_associated_SNPs_131675 0 0 1 0 0 Ribosome 0 0.500231643921085 0.655860900878906 0.000463287842169535 hm5C_site_51733 DeepMRMD:0.655860900878906;iRNA_m5C:0.000463287842169535 51734 chr1 212799483 212799483 1 + G C BLCA 212799483 + 212799463 212799503 41 CCAGCGCTGAAGGCTGCAAGGAGGGGAGGGAAAGAAGGGAA CCAGCGCTGAAGGCTGCAAGCAGGGGAGGGAAAGAAGGGAA Direct Gain 0 0.945649405517502 0 0.851721286773682 prediction 0.891298811035005 Functional Gain - FAM71A ENSG00000162771 CDS Human protein_coding chr1:212799483 chr1:212799483 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_131676 0 0 0 0 0 exosome 0 0.500231643917369 0.703442573547364 0.000463287834737258 hm5C_site_51734 DeepMRMD:0.703442573547364;iRNA_m5C:0.000463287834737258 51735 chr7 123509185 123509185 1 + G C BLCA 123509185 + 123509165 123509205 41 TTTCGGGTGCATGAATCCATGAGGATCTCCACCATGACATC TTTCGGGTGCATGAATCCATCAGGATCTCCACCATGACATC Direct Gain 0 0.945626678144909 0 0.799877047538757 prediction 0.891253356289818 Functional Gain - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123509185 chr7:123509185 nonsynonymous SNV 0.562 0 21 hm5C_associated_SNPs_131677 0 0 0 0 1 Nucleus 0 0.500231661750123 0.599754095077514 0.000463323500246471 hm5C_site_51735 DeepMRMD:0.599754095077514;iRNA_m5C:0.000463323500246471 51736 chr17 41133041 41133041 1 + G C HNSC 41133041 + 41133021 41133061 41 CCGGCGACCCCGCCAGCGATGAGGGCGATGGGCTGCCAGGG CCGGCGACCCCGCCAGCGATCAGGGCGATGGGCTGCCAGGG Direct Gain 0 0.945624990272052 0 0.966397166252136 prediction 0.891249980544104 Functional Gain - RUNDC1 ENSG00000198863 CDS Human protein_coding chr17:41133041 chr17:41133041 nonsynonymous SNV 0.110 0 21 hm5C_associated_SNPs_131678 0 0 1 0 1 exosome 0 0.500231643921121 0.932794332504272 0.000463287842241256 hm5C_site_51736 DeepMRMD:0.932794332504272;iRNA_m5C:0.000463287842241256 51737 chr16 11009462 11009462 1 + A G rs140103491 11009462 - 11009442 11009482 41 CCGTGAGGATCCGCACCAGTTTGGGGAAAGCCTGGGGGCCT CCGTGAGGATCCGCACCAGTCTGGGGAAAGCCTGGGGGCCT Direct Gain 0 0.945623879583829 0 0.892830014228821 prediction 0.891247759167658 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11009462 chr16:11009462 nonsynonymous SNV 0.975 0 21 hm5C_associated_SNPs_131679 1 0 0 0 0 Nucleus 0 0.500231643986556 0.785660028457642 0.000463287973111459 hm5C_site_51737 DeepMRMD:0.785660028457642;iRNA_m5C:0.000463287973111459 SCID due to absent class II HLA antigens SCID due to absent class II HLA antigens 51738 chr4 1388726 1388726 1 + T C READ 1388726 + 1388706 1388746 41 CGCCTGCTCACACGTGCCCATGCGGAGTGCCCGCCTGCTCA CGCCTGCTCACACGTGCCCACGCGGAGTGCCCGCCTGCTCA Direct Gain 0 0.945600431847526 0 0.702547669410706 prediction 0.891200863695052 Functional Gain - CRIPAK ENSG00000179979 CDS Human protein_coding chr4:1388726 chr4:1388726 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_131680 0 0 0 0 0 chromatin 0 0.500231861261161 0.405095338821412 0.000463722522322962 hm5C_site_51738 DeepMRMD:0.405095338821412;iRNA_m5C:0.000463722522322962 51739 chr17 78978276 78978276 1 + A G rs61115021 78978276 - 78978256 78978296 41 GGGGTTCGCCCGGGGGCCCATTGCAGGCAGCCAGGGGCTGA GGGGTTCGCCCGGGGGCCCACTGCAGGCAGCCAGGGGCTGA Direct Gain 0 0.945597432334071 0 0.444379091262817 prediction 0.891194864668141 Functional Gain - CHMP6;BAIAP2-AS1 ENSG00000175911 CDS Human other chr17:78978276 chr17:78978276 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131681 0 0 0 0 0 unknown 0 0.500231611775765 0 0.000463223551530945 hm5C_site_51739 DeepMRMD:0;iRNA_m5C:0.000463223551530945 51740 chr18 56338679 56338679 1 + G C rs542351959 56338679 + 56338659 56338699 41 CGCGGCTGGCGCGGCCAGCAGGCCAGGCTCCCCTCGGCAAA CGCGGCTGGCGCGGCCAGCACGCCAGGCTCCCCTCGGCAAA Direct Gain 0 0.945588811027497 0 0.93743097782135 prediction 0.891177622054993 Functional Gain - MALT1 ENSG00000267226 ncRNA_intronic Human antisense chr18:56338679 chr18:56338679 . . 0 21 hm5C_associated_SNPs_131682 0 0 0 0 0 Nucleus 0 0.500231643921313 0.8748619556427 0.000463287842626059 hm5C_site_51740 DeepMRMD:0.8748619556427;iRNA_m5C:0.000463287842626059 51741 chr10 46999073 46999073 1 + G C BLCA 46999073 + 46999053 46999093 41 GACCCCAGGCCCCGGAGGAAGAGGGGAACCCGCCTGAGAGC GACCCCAGGCCCCGGAGGAACAGGGGAACCCGCCTGAGAGC Direct Gain 0 0.945587144830747 0 0.924361109733582 prediction 0.891174289661494 Functional Gain - GPRIN2 ENSG00000204175 CDS Human protein_coding chr10:46999073 chr10:46999073 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131683 0 0 0 0 0 exosome 0 0.500231643921092 0.848722219467164 0.000463287842184856 hm5C_site_51741 DeepMRMD:0.848722219467164;iRNA_m5C:0.000463287842184856 51742 chr16 58538305 58538305 1 + C G BLCA 58538305 - 58538285 58538325 41 CCGAAATGCTGCACCACGCTGGGGAGCATGGCAGCCAGCTG CCGAAATGCTGCACCACGCTCGGGAGCATGGCAGCCAGCTG Direct Gain 0 0.945586813381565 0 0.959093809127808 prediction 0.891173626763129 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538305 chr16:58538305 synonymous SNV . 0 21 hm5C_associated_SNPs_131684 0 0 0 0 0 Exosome 0 0.500231660515541 0.918187618255616 0.000463321031081376 hm5C_site_51742 DeepMRMD:0.918187618255616;iRNA_m5C:0.000463321031081376 51743 chr11 8118273 8118273 1 + G C LUSC 8118273 + 8118253 8118293 41 TTGACGAGGATGAGGAGGATGAGGAGGAGAATAGCTCCAGC TTGACGAGGATGAGGAGGATCAGGAGGAGAATAGCTCCAGC Direct Gain 0 0.945586081081336 0 0.930285930633545 prediction 0.891172162162672 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8118273 chr11:8118273 nonsynonymous SNV 0.992 3 21 hm5C_associated_SNPs_131685 0 0 1 0 1 nucleus 0 0.500231643920828 0.86057186126709 0.000463287841656612 hm5C_site_51743 DeepMRMD:0.86057186126709;iRNA_m5C:0.000463287841656612 51744 chrX 153420169 153420169 1 + T G ESCA 153420169 - 153420149 153420189 41 AGGTAGCAGAGCATGATGATAGCGAGTGGGATGATGCAGCA AGGTAGCAGAGCATGATGATCGCGAGTGGGATGATGCAGCA Direct Gain 0 0.945583580304258 0 0.864125072956085 prediction 0.891167160608517 Functional Gain - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153420169 chrX:153420169 synonymous SNV . 0 21 hm5C_associated_SNPs_131686 0 0 0 0 0 unknown 0 0.500422634829156 0.72825014591217 0.000845269658311665 hm5C_site_51744 DeepMRMD:0.72825014591217;iRNA_m5C:0.000845269658311665 51745 chr17 29058928 29058928 1 + G C rs536085168 29058928 + 29058908 29058948 41 CGCCTCAGAAGCACGGCGGTGGGGGAGGGGGCGGCTCGGGG CGCCTCAGAAGCACGGCGGTCGGGGAGGGGGCGGCTCGGGG Direct Gain 0 0.945561911333923 0 0.898015737533569 prediction 0.891123822667847 Functional Gain - SUZ12P1 ENSG00000264538 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:29058928 chr17:29058928 . . 0 21 hm5C_associated_SNPs_131687 0 0 1 0 0 unknown 0 0.500231361733574 0.796031475067138 0.000462723467147708 hm5C_site_51745 DeepMRMD:0.796031475067138;iRNA_m5C:0.000462723467147708 51746 chr11 69456047 69456047 1 + C G rs11557585 69456047 - 69456027 69456067 41 CTGGGCAGCTGGGGAGGGCTGTGGGTCCTGGCTGGGTCCGC CTGGGCAGCTGGGGAGGGCTCTGGGTCCTGGCTGGGTCCGC Direct Gain 0 0.945528764941854 0 0.938634395599365 prediction 0.891057529883709 Functional Gain - CCND1 ENSG00000110092 UTR5 Human protein_coding chr11:69456047 chr11:69456047 . . 0 21 hm5C_associated_SNPs_131688 0 0 0 0 0 Ribosome 0 0.500231643921092 0.87726879119873 0.000463287842184856 hm5C_site_51746 DeepMRMD:0.87726879119873;iRNA_m5C:0.000463287842184856 51747 chr19 1468499 1468499 1 + C G LUSC 1468499 - 1468479 1468519 41 TGTCGTCCCTTCCTGTGCTTGGGGGGCTGTAGGGTGGATCC TGTCGTCCCTTCCTGTGCTTCGGGGGCTGTAGGGTGGATCC Direct Gain 0 0.945524859810218 0 0.958900690078735 prediction 0.891049719620436 Functional Gain - APC2 ENSG00000115266 CDS Human protein_coding chr19:1468499 chr19:1468499 synonymous SNV . 0 21 hm5C_associated_SNPs_131689 0 0 1 0 0 nucleolus 0 0.500231643921081 0.91780138015747 0.000463287842161764 hm5C_site_51747 DeepMRMD:0.91780138015747;iRNA_m5C:0.000463287842161764 51748 chr1 152770363 152770363 1 + T G LUAD 152770363 - 152770343 152770383 41 GAAGAGACTGGAGGGCACTTAGGGGGACATTTAGGGGCGGG GAAGAGACTGGAGGGCACTTCGGGGGACATTTAGGGGCGGG Direct Gain 0 0.945523511396761 0 0.912274241447449 prediction 0.891047022793521 Functional Gain - LCE1D ENSG00000172155 CDS Human protein_coding chr1:152770363 chr1:152770363 synonymous SNV . 0 21 hm5C_associated_SNPs_131690 0 0 0 0 0 unknown 0 0.500231643921092 0.824548482894898 0.000463287842184856 hm5C_site_51748 DeepMRMD:0.824548482894898;iRNA_m5C:0.000463287842184856 51749 chr15 84255835 84255835 1 + T C COAD 84255835 + 84255815 84255855 41 GCTGCAGAGCAAGCTACAGATGCGGTAAGCACCTCCACGTT GCTGCAGAGCAAGCTACAGACGCGGTAAGCACCTCCACGTT Direct Gain 0 0.945501949134767 0 0.894851684570312 prediction 0.891003898269535 Functional Gain - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84255835 chr15:84255835 nonsynonymous SNV 0.967 0 21 hm5C_associated_SNPs_131691 0 0 0 0 2 Ribosome 0 0.500231643530376 0.789703369140624 0.000463287060752604 hm5C_site_51749 DeepMRMD:0.789703369140624;iRNA_m5C:0.000463287060752604 51750 chr5 52779510 52779510 1 + G C rs11745088 52779510 + 52779490 52779530 41 TCCTAAAGGCAAGATGTAAAGAGCAGCCAGAACTGGAAGTC TCCTAAAGGCAAGATGTAAACAGCAGCCAGAACTGGAAGTC Direct Gain 0 0.945495791224433 0 0.728574872016907 prediction 0.890991582448865 Functional Gain - FST ENSG00000134363 CDS Human protein_coding chr5:52779510 chr5:52779510 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_131692 0 0 1 0 1 nucleus 0 0.500507867923658 0.457149744033814 0.00101573584731574 hm5C_site_51750 DeepMRMD:0.457149744033814;iRNA_m5C:0.00101573584731574 51751 chr19 747184 747184 1 + C G rs541549177 747184 - 747164 747204 41 AGGCACAGGTAGGAGGCCCAGAGGGTGGCAGGCTGGCCTGG AGGCACAGGTAGGAGGCCCACAGGGTGGCAGGCTGGCCTGG Direct Gain 0 0.9454775272137 0 0.892084240913391 prediction 0.8909550544274 Functional Gain - PALM ENSG00000099864 UTR3 Human protein_coding chr19:747184 chr19:747184 . . 0 21 hm5C_associated_SNPs_131693 0 0 0 0 0 Cytosol 0 0.500231645126397 0.784168481826782 0.000463290252794346 hm5C_site_51751 DeepMRMD:0.784168481826782;iRNA_m5C:0.000463290252794346 51752 chr4 94750489 94750489 1 + G C LUAD 94750489 + 94750469 94750509 41 TGAAAGGCGGGGTGGTGGTAGACGAGCTGGGCTGCAGCCGC TGAAAGGCGGGGTGGTGGTACACGAGCTGGGCTGCAGCCGC Direct Gain 0 0.945472197934802 0 0.382289260625839 prediction 0.890944395869604 Functional Gain - ATOH1 ENSG00000172238 CDS Human protein_coding chr4:94750489 chr4:94750489 nonsynonymous SNV 0.984 2 21 hm5C_associated_SNPs_131694 0 0 0 0 0 unknown 0 0.500231643921092 0 0.000463287842184856 hm5C_site_51752 DeepMRMD:0;iRNA_m5C:0.000463287842184856 51753 chrX 37027541 37027541 1 + A G UCEC 37027541 - 37027521 37027561 41 CTGGAGGTTCCGGGCAGAGATGGGACACTCCAGTCTCGGGA CTGGAGGTTCCGGGCAGAGACGGGACACTCCAGTCTCGGGA Direct Gain 0 0.945469490028322 0 0.902350902557373 prediction 0.890938980056643 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37027541 chrX:37027541 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131695 0 0 0 0 0 unknown 0 0.500231702366057 0.804701805114746 0.000463404732114148 hm5C_site_51753 DeepMRMD:0.804701805114746;iRNA_m5C:0.000463404732114148 51754 chr12 11083284 11083284 1 + A C CESC 11083284 + 11083264 11083304 41 GAGGAGACTCTGAGCAGTTCATAGATGAGGAGCGTCAGGGA GAGGAGACTCTGAGCAGTTCCTAGATGAGGAGCGTCAGGGA Direct Gain 0 0.945468743464571 0 0.917191743850708 prediction 0.890937486929143 Functional Gain - PRH2 ENSG00000134551 CDS Human protein_coding chr12:11083284 chr12:11083284 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131696 0 0 0 0 1 exosome 0 0.500231361270381 0.834383487701416 0.000462722540762961 hm5C_site_51754 DeepMRMD:0.834383487701416;iRNA_m5C:0.000462722540762961 51755 chr7 123296054 123296054 1 + T C LUSC 123296054 + 123296034 123296074 41 ACCGAAGAGGACTCAGTAAATACGAATCCATCGACGAGGAT ACCGAAGAGGACTCAGTAAACACGAATCCATCGACGAGGAT Direct Gain 0 0.945459949294336 0 0.291995912790298 prediction 0.890919898588671 Functional Gain - LMOD2 ENSG00000170807 CDS Human protein_coding chr7:123296054 chr7:123296054 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131697 0 0 0 0 0 exosome 0 0.500231643919243 0 0.000463287838485815 hm5C_site_51755 DeepMRMD:0;iRNA_m5C:0.000463287838485815 51756 chr1 164761873 164761873 1 + T C LUAD 164761873 + 164761853 164761893 41 GCGGCAGCGGCGGCGGCTTCTGGAGGGGCAGGTTCAGACAA GCGGCAGCGGCGGCGGCTTCCGGAGGGGCAGGTTCAGACAA Direct Gain 0 0.945444192984822 0 0.931729972362518 prediction 0.890888385969643 Functional Gain - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164761873 chr1:164761873 synonymous SNV . 0 21 hm5C_associated_SNPs_131698 0 0 0 0 0 Ribosome 0 0.500231643921092 0.863459944725036 0.000463287842184856 hm5C_site_51756 DeepMRMD:0.863459944725036;iRNA_m5C:0.000463287842184856 51757 chr22 20760522 20760522 1 + A G LUSC 20760522 - 20760502 20760542 41 CATGCACGGTGAGGGATGAGTGGCAGGTGAAGGCCTTGCCG CATGCACGGTGAGGGATGAGCGGCAGGTGAAGGCCTTGCCG Direct Gain 0 0.945434972716628 0 0.805562973022461 prediction 0.890869945433257 Functional Gain - ZNF74 ENSG00000185252 CDS Human protein_coding chr22:20760522 chr22:20760522 nonsynonymous SNV 0.993 1 21 hm5C_associated_SNPs_131699 0 0 0 0 0 Cytosol 0 0.500231643899823 0.611125946044922 0.000463287799646883 hm5C_site_51757 DeepMRMD:0.611125946044922;iRNA_m5C:0.000463287799646883 51758 chr6 170871206 170871206 1 + A G UCEC 170871206 - 170871186 170871226 41 GCCCGGCAAGGGTGCAGTTGTGAGAGTCTGTGAGTGGAAGA GCCCGGCAAGGGTGCAGTTGCGAGAGTCTGTGAGTGGAAGA Direct Gain 0 0.945433459667716 0 0.591294169425964 prediction 0.890866919335432 Functional Gain - TBP ENSG00000112592 CDS Human protein_coding chr6:170871206 chr6:170871206 nonsynonymous SNV 0.976 3 21 hm5C_associated_SNPs_131700 0 0 0 0 0 Cytosol 0 0.500231644207037 0.182588338851928 0.000463288414074059 hm5C_site_51758 DeepMRMD:0.182588338851928;iRNA_m5C:0.000463288414074059 51759 chr11 47603914 47603914 1 + T C STAD 47603914 + 47603894 47603934 41 TTCCTAGATCTGGGACATGTTTGGAGTCTTCTTTGCTAACC TTCCTAGATCTGGGACATGTCTGGAGTCTTCTTTGCTAACC Direct Gain 0 0.945429945916248 0 0.745696723461151 prediction 0.890859891832495 Functional Gain - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47603914 chr11:47603914 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131701 0 0 1 0 1 Ribosome 0 0.500231232560792 0.491393446922302 0.000462465121584765 hm5C_site_51759 DeepMRMD:0.491393446922302;iRNA_m5C:0.000462465121584765 51760 chr16 18995320 18995320 1 + A C rs530038460 18995320 + 18995300 18995340 41 TCCGCGAGGGAAGGCCGGGGAGGCGGCGGCGGCGGCGGCGG TCCGCGAGGGAAGGCCGGGGCGGCGGCGGCGGCGGCGGCGG Direct Gain 0 0.945418466705493 0 0.752679586410522 prediction 0.890836933410986 Functional Gain - TMC7 ENSG00000170537 UTR5 Human protein_coding chr16:18995320 chr16:18995320 . . 0 21 hm5C_associated_SNPs_131702 0 0 0 0 0 chromatin 0 0.500231640319542 0.505359172821044 0.000463280639083186 hm5C_site_51760 DeepMRMD:0.505359172821044;iRNA_m5C:0.000463280639083186 51761 chr4 120325786 120325786 1 + C G rs561196807 120325786 - 120325766 120325806 41 CCAGGTGTTGAGGCAGGGCTGGGGTGTCCCCTTCCAGCCAG CCAGGTGTTGAGGCAGGGCTCGGGTGTCCCCTTCCAGCCAG Direct Gain 0 0.94541648487483 0 0.84232771396637 prediction 0.89083296974966 Functional Gain - LINC01061 ENSG00000249244;ENSG00000260091 intergenic Human other chr4:120325786 chr4:120325786 . . 0 21 hm5C_associated_SNPs_131703 0 0 0 0 0 unknown 0 0.500231643921092 0.68465542793274 0.000463287842184856 hm5C_site_51761 DeepMRMD:0.68465542793274;iRNA_m5C:0.000463287842184856 51762 chr7 89749170 89749170 1 + T C LUAD 89749170 + 89749150 89749190 41 GGTTCCCCAGCAGAACCACTTTGGACTTCGGTAAGGAGAGG GGTTCCCCAGCAGAACCACTCTGGACTTCGGTAAGGAGAGG Direct Gain 0 0.945403842953796 0 0.588373184204102 prediction 0.890807685907591 Functional Gain - DPY19L2P4 ENSG00000235436 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:89749170 chr7:89749170 . . 0 21 hm5C_associated_SNPs_131704 0 0 0 0 1 unknown 0 0.500231643921092 0.176746368408204 0.000463287842184856 hm5C_site_51762 DeepMRMD:0.176746368408204;iRNA_m5C:0.000463287842184856 51763 chr1 218458660 218458660 1 + T C LUAD 218458660 + 218458640 218458680 41 ACGCTTCCGGCGCAGAAAAATGGCAGCCGCCGCTCCGGACT ACGCTTCCGGCGCAGAAAAACGGCAGCCGCCGCTCCGGACT Direct Gain 0 0.945394587716745 0 0.777720808982849 prediction 0.89078917543349 Functional Gain - RRP15 ENSG00000067533 CDS Human protein_coding chr1:218458660 chr1:218458660 nonsynonymous SNV 0.053 3 21 hm5C_associated_SNPs_131705 0 0 1 0 0 Ribosome 0 0.500231643921092 0.555441617965698 0.000463287842184856 hm5C_site_51763 DeepMRMD:0.555441617965698;iRNA_m5C:0.000463287842184856 51764 chr20 3725553 3725553 1 + T C rs140210757 3725553 + 3725533 3725573 41 CCCTGTGCCTCCGCAGGAAATGGGAGGGCGGAGACCCGGGC CCCTGTGCCTCCGCAGGAAACGGGAGGGCGGAGACCCGGGC Direct Gain 0 0.945385346491179 0 0.920848309993744 prediction 0.890770692982358 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3725553 chr20:3725553 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131706 0 0 0 0 1 exosome 0 0.500231643921086 0.841696619987488 0.000463287842171756 hm5C_site_51764 DeepMRMD:0.841696619987488;iRNA_m5C:0.000463287842171756 51765 chr19 4433412 4433412 1 + A G rs8100525 4433412 - 4433392 4433432 41 GGACGCTGCCACTGTCCTCTTTGGGGGCCGAGGGCACCGAT GGACGCTGCCACTGTCCTCTCTGGGGGCCGAGGGCACCGAT Direct Gain 0 0.945376305268642 0 0.953293323516846 prediction 0.890752610537284 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4433412 chr19:4433412 nonsynonymous SNV 0.276 0 21 hm5C_associated_SNPs_131707 0 0 0 0 0 Nucleus 0 0.500231643921396 0.906586647033692 0.00046328784279126 hm5C_site_51765 DeepMRMD:0.906586647033692;iRNA_m5C:0.00046328784279126 51766 chr2 27315266 27315266 1 + C G rs112920456 27315266 - 27315246 27315286 41 ATGAAGGCACAGGGGGCTCCGAGCAGGGAGAGAACGGTGCA ATGAAGGCACAGGGGGCTCCCAGCAGGGAGAGAACGGTGCA Direct Gain 0 0.945359276358967 0 0.758290886878967 prediction 0.890718552717935 Functional Gain - KHK ENSG00000138030 CDS Human protein_coding chr2:27315266 chr2:27315266 synonymous SNV . 0 21 hm5C_associated_SNPs_131708 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921769 0.516581773757934 0.00046328784353844 hm5C_site_51766 DeepMRMD:0.516581773757934;iRNA_m5C:0.00046328784353844 51767 chr4 123663761 123663761 1 + T C rs17006082 123663761 + 123663741 123663781 41 ATCCACAGTAGGCATTTTAATAGGACAGATAATACTGAAGG ATCCACAGTAGGCATTTTAACAGGACAGATAATACTGAAGG Direct Gain 0 0.945355903287458 0 0.796703696250916 prediction 0.890711806574917 Functional Gain - BBS12 ENSG00000181004 CDS Human protein_coding chr4:123663761 chr4:123663761 synonymous SNV . 0 21 hm5C_associated_SNPs_131709 0 0 0 0 0 Cytosol 0 0.500231643921093 0.593407392501832 0.000463287842185078 hm5C_site_51767 DeepMRMD:0.593407392501832;iRNA_m5C:0.000463287842185078 51768 chr7 137802696 137802696 1 + A C rs554615032 137802696 + 137802676 137802716 41 AATGGCATGAACCCGGGAGGAGGAGCTTGCAGTGAGCCGAG AATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAG Direct Gain 0 0.945350161447171 0 0.784928560256958 prediction 0.890700322894342 Functional Gain - AKR1D1 ENSG00000122787 UTR3 Human protein_coding chr7:137802696 chr7:137802696 . . 0 21 hm5C_associated_SNPs_131710 1 0 0 0 0 cytosol 0 0.500231643921092 0.569857120513916 0.000463287842183746 hm5C_site_51768 DeepMRMD:0.569857120513916;iRNA_m5C:0.000463287842183746 Congenital Bile Acid Synthesis Defect Congenital Bile Acid Synthesis Defect 51769 chr17 26554362 26554362 1 + A G UCEC 26554362 - 26554342 26554382 41 GGCCAAAAGCACCGTGGCCATGAGAGGCCACGACCTGCGAA GGCCAAAAGCACCGTGGCCACGAGAGGCCACGACCTGCGAA Direct Gain 0 0.945327493335201 0 0.647844970226288 prediction 0.890654986670403 Functional Gain - PYY2 ENSG00000237575 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:26554362 chr17:26554362 . . 0 21 hm5C_associated_SNPs_131711 0 0 0 0 0 unknown 0 0.500231644291939 0.295689940452576 0.00046328858387823 hm5C_site_51769 DeepMRMD:0.295689940452576;iRNA_m5C:0.00046328858387823 51770 chr1 36785422 36785422 1 + A G COAD 36785422 - 36785402 36785442 41 CCTAGAGTGAGGGTCTTCTCTGGGGAGGGGACTTTGTCAGG CCTAGAGTGAGGGTCTTCTCCGGGGAGGGGACTTTGTCAGG Direct Gain 0 0.945326989384663 0 0.962060570716858 prediction 0.890653978769325 Functional Gain - SH3D21 ENSG00000214193 CDS Human protein_coding chr1:36785422 chr1:36785422 synonymous SNV . 0 21 hm5C_associated_SNPs_131712 0 0 0 0 0 Nucleus 0 0.500231643921098 0.924121141433716 0.000463287842196847 hm5C_site_51770 DeepMRMD:0.924121141433716;iRNA_m5C:0.000463287842196847 51771 chr2 44079924 44079924 1 + T C OV 44079924 + 44079904 44079944 41 GTCTGGCACCCCCATCTACTTAGGGGCGGCCCAGCACATGG GTCTGGCACCCCCATCTACTCAGGGGCGGCCCAGCACATGG Direct Gain 0 0.945295347356993 0 0.90450644493103 prediction 0.890590694713987 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079924 chr2:44079924 nonsynonymous SNV 0.643 0 21 hm5C_associated_SNPs_131713 0 0 0 0 1 cytosol 0 0.500231643422144 0.80901288986206 0.000463286844288424 hm5C_site_51771 DeepMRMD:0.80901288986206;iRNA_m5C:0.000463286844288424 51772 chr11 66407477 66407477 1 + G C HNSC 66407477 + 66407457 66407497 41 AGGAGCTTCGAGCCAAGTTTGAGGAGTATGGTCCGGTCATC AGGAGCTTCGAGCCAAGTTTCAGGAGTATGGTCCGGTCATC Direct Gain 0 0.945285246870722 0 0.964227318763733 prediction 0.890570493741444 Functional Gain - RBM4 ENSG00000173933 CDS Human protein_coding chr11:66407477 chr11:66407477 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_131714 0 0 1 0 0 Ribosome 0 0.500231643921222 0.928454637527466 0.000463287842444204 hm5C_site_51772 DeepMRMD:0.928454637527466;iRNA_m5C:0.000463287842444204 51773 chr18 28934375 28934375 1 + T C rs117656447 28934375 + 28934355 28934395 41 TGTGGGTTGTTGTAGCTTCATTGGAGAAGACCTGGATGACA TGTGGGTTGTTGTAGCTTCACTGGAGAAGACCTGGATGACA Direct Gain 0 0.945277226149712 0 0.76577216386795 prediction 0.890554452299423 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28934375 chr18:28934375 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131715 0 0 0 0 0 unknown 0 0.500231261696256 0.5315443277359 0.000462523392511072 hm5C_site_51773 DeepMRMD:0.5315443277359;iRNA_m5C:0.000462523392511072 51774 chr11 130343292 130343292 1 + C G BLCA 130343292 - 130343272 130343312 41 CCCGGGGGTCCTTGGGATGAGAGGACTTGTCCTCCCGAGGC CCCGGGGGTCCTTGGGATGACAGGACTTGTCCTCCCGAGGC Direct Gain 0 0.945266333074787 0 0.53753125667572 prediction 0.890532666149575 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130343292 chr11:130343292 nonsynonymous SNV 0.544 0 21 hm5C_associated_SNPs_131716 0 0 0 0 0 exosome 0 0.500231643920622 0.07506251335144 0.000463287841244053 hm5C_site_51774 DeepMRMD:0.07506251335144;iRNA_m5C:0.000463287841244053 51775 chr22 21989500 21989500 1 + G C LUAD 21989500 + 21989480 21989520 41 TCAGAGAAAACGCAAGGACAGAGGAGGCTCCCCCTCCATGT TCAGAGAAAACGCAAGGACACAGGAGGCTCCCCCTCCATGT Direct Gain 0 0.945257659522816 0 0.656407713890076 prediction 0.890515319045632 Functional Gain - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21989500 chr22:21989500 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131717 0 0 0 0 1 nucleolus 0 0.500231643921092 0.312815427780152 0.000463287842184856 hm5C_site_51775 DeepMRMD:0.312815427780152;iRNA_m5C:0.000463287842184856 51776 chr17 41181176 41181176 1 + C G rs140894447 41181176 - 41181156 41181196 41 TCTAGGGCTGGTGGACTGATGGGGGGCAAGGGCTTCTCCTT TCTAGGGCTGGTGGACTGATCGGGGGCAAGGGCTTCTCCTT Direct Gain 0 0.945246546970116 0 0.991261959075928 prediction 0.890493093940233 Functional Gain - RND2 ENSG00000108830 UTR3 Human protein_coding chr17:41181176 chr17:41181176 . . 0 21 hm5C_associated_SNPs_131718 0 0 0 0 0 Nucleus 0 0.500231643921092 0.982523918151856 0.000463287842184856 hm5C_site_51776 DeepMRMD:0.982523918151856;iRNA_m5C:0.000463287842184856 51777 chr2 11706687 11706687 1 + T C UCEC 11706687 + 11706667 11706707 41 CCCTGCGGGCTTTCTCCTCGTGGGGGTCAAGTCCCCCAGCC CCCTGCGGGCTTTCTCCTCGCGGGGGTCAAGTCCCCCAGCC Direct Gain 0 0.945240668719518 0 0.982111096382141 prediction 0.890481337439035 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11706687 chr2:11706687 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_131719 0 0 0 0 1 Nucleus 0 0.500231643916668 0.964222192764282 0.000463287833336379 hm5C_site_51777 DeepMRMD:0.964222192764282;iRNA_m5C:0.000463287833336379 51778 chr18 12431428 12431428 1 + A G rs12605433 12431428 - 12431408 12431448 41 GAGAGAAGGGGCTGGGCCACTGCGGCAGGCAGGACGATGGG GAGAGAAGGGGCTGGGCCACCGCGGCAGGCAGGACGATGGG Direct Gain 0 0.945232958639673 0 0.545779526233673 prediction 0.890465917279347 Functional Gain - PRELID3A ENSG00000141391 UTR3 Human protein_coding chr18:12431428 chr18:12431428 . . 0 21 hm5C_associated_SNPs_131720 0 0 0 0 0 chromatin 0 0.500231643915048 0.091559052467346 0.000463287830095416 hm5C_site_51778 DeepMRMD:0.091559052467346;iRNA_m5C:0.000463287830095416 51779 chr6 146865058 146865058 1 + A G LUSC 146865058 - 146865038 146865078 41 TGCTCGCGGGTCTCGGGCGCTGGGGCGGCGGCCGCCCCCAG TGCTCGCGGGTCTCGGGCGCCGGGGCGGCGGCCGCCCCCAG Direct Gain 0 0.945226569233948 0 0.951490879058838 prediction 0.890453138467896 Functional Gain - RAB32 ENSG00000118508 CDS Human protein_coding chr6:146865058 chr6:146865058 synonymous SNV . 0 21 hm5C_associated_SNPs_131721 0 0 0 0 0 Ribosome 0 0.500231643921092 0.902981758117676 0.000463287842184856 hm5C_site_51779 DeepMRMD:0.902981758117676;iRNA_m5C:0.000463287842184856 51780 chr15 85341886 85341886 1 + C G BLCA 85341886 - 85341866 85341906 41 CTCGAGAGCCAGGGCGGCTTGAGGATGTGTCCGCTGAAGAC CTCGAGAGCCAGGGCGGCTTCAGGATGTGTCCGCTGAAGAC Direct Gain 0 0.945222703359806 0 0.880007863044739 prediction 0.890445406719612 Functional Gain - ZNF592 ENSG00000166716 CDS Human protein_coding chr15:85341886 chr15:85341886 stopgain 0.265 0 21 hm5C_associated_SNPs_131722 0 0 0 0 0 Cytosol 0 0.50023164779788 0.760015726089478 0.000463295595759083 hm5C_site_51780 DeepMRMD:0.760015726089478;iRNA_m5C:0.000463295595759083 51781 chr1 203452383 203452383 1 + G C UCEC 203452383 + 203452363 203452403 41 GGCCCAAGGCCAGCCAACAAGACGACCAAGACCCGGGACTG GGCCCAAGGCCAGCCAACAACACGACCAAGACCCGGGACTG Direct Gain 0 0.945208490102789 0 0.770909070968628 prediction 0.890416980205579 Functional Gain - PRELP ENSG00000188783 CDS Human protein_coding chr1:203452383 chr1:203452383 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_131723 0 0 0 0 1 exosome 0 0.500231643966576 0.541818141937256 0.000463287933152978 hm5C_site_51781 DeepMRMD:0.541818141937256;iRNA_m5C:0.000463287933152978 51782 chrX 129058863 129058863 1 + G C LUAD 129058863 + 129058843 129058883 41 GGAAGCAAAAAGCAAGTTCAGAGGGGACTATTCCCCAGGTC GGAAGCAAAAAGCAAGTTCACAGGGGACTATTCCCCAGGTC Direct Gain 0 0.945204651239605 0 0.845102310180664 prediction 0.890409302479209 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129058863 chrX:129058863 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131724 0 0 1 0 1 Cytosol 0 0.500231643921092 0.690204620361328 0.000463287842184856 hm5C_site_51782 DeepMRMD:0.690204620361328;iRNA_m5C:0.000463287842184856 51783 chrX 149826404 149826404 1 + G C BRCA 149826404 + 149826384 149826424 41 ACTGCTCAGCTGACATCCTTGGCCATGCTGATGTTGGATAG ACTGCTCAGCTGACATCCTTCGCCATGCTGATGTTGGATAG Direct Gain 0 0.945196338667706 0 0.874644160270691 prediction 0.890392677335412 Functional Gain - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149826404 chrX:149826404 nonsynonymous SNV 0.998 5 21 hm5C_associated_SNPs_131725 0 0 0 0 1 Ribosome 0 0.500231643989124 0.749288320541382 0.000463287978247573 hm5C_site_51783 DeepMRMD:0.749288320541382;iRNA_m5C:0.000463287978247573 51784 chr2 238419253 238419253 1 + G C CESC 238419253 + 238419233 238419273 41 ATTAAGAAGGAAAGCTCCAAGAGGGAGCTGCTTTCCGACAC ATTAAGAAGGAAAGCTCCAACAGGGAGCTGCTTTCCGACAC Direct Gain 0 0.945195117117248 0 0.932184994220734 prediction 0.890390234234496 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238419253 chr2:238419253 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_131726 0 0 0 0 1 Nucleus 0 0.500231643367027 0.864369988441468 0.00046328673405327 hm5C_site_51784 DeepMRMD:0.864369988441468;iRNA_m5C:0.00046328673405327 51785 chr20 5903606 5903606 1 + T C LUAD 5903606 + 5903586 5903626 41 GGTGAGGAAGATGCCACCTCTGAGGTGGACAAACGACGCAC GGTGAGGAAGATGCCACCTCCGAGGTGGACAAACGACGCAC Direct Gain 0 0.94519354642166 0 0.785940647125244 prediction 0.89038709284332 Functional Gain - CHGB ENSG00000089199 CDS Human protein_coding chr20:5903606 chr20:5903606 synonymous SNV . 0 21 hm5C_associated_SNPs_131727 0 0 0 0 0 exosome 0 0.500231643919099 0.571881294250488 0.000463287838197601 hm5C_site_51785 DeepMRMD:0.571881294250488;iRNA_m5C:0.000463287838197601 51786 chr1 154989004 154989004 1 + A G LUAD 154989004 - 154988984 154989024 41 GGAAGGTGTCCAGGTGGCCATTGGAGAGGTCGAGGCCAGCG GGAAGGTGTCCAGGTGGCCACTGGAGAGGTCGAGGCCAGCG Direct Gain 0 0.945188471692668 0 0.653735041618347 prediction 0.890376943385336 Functional Gain - ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154989004 chr1:154989004 nonsynonymous SNV 0.997 1 21 hm5C_associated_SNPs_131728 0 0 0 0 0 chromatin 0 0.500231644343949 0.307470083236694 0.000463288687898356 hm5C_site_51786 DeepMRMD:0.307470083236694;iRNA_m5C:0.000463288687898356 51787 chr17 78389025 78389025 1 + G C CESC 78389025 + 78389005 78389045 41 AGGCGGCGGGAGGGCCGCCGGAGGAAACGCTGTCACTGTGG AGGCGGCGGGAGGGCCGCCGCAGGAAACGCTGTCACTGTGG Direct Gain 0 0.945156584403477 0 0.925487875938416 prediction 0.890313168806955 Functional Gain - ENDOV ENSG00000173818 CDS Human protein_coding chr17:78389025 chr17:78389025 nonsynonymous SNV 0.221 0 21 hm5C_associated_SNPs_131729 0 0 1 0 1 Ribosome 0 0.500231643921299 0.850975751876832 0.000463287842597193 hm5C_site_51787 DeepMRMD:0.850975751876832;iRNA_m5C:0.000463287842597193 51788 chr12 110353227 110353227 1 + A C BLCA 110353227 + 110353207 110353247 41 GGTTGCAGAGCGCCGGCTGCAGGCATGGGAAGCAGACCAGC GGTTGCAGAGCGCCGGCTGCCGGCATGGGAAGCAGACCAGC Direct Gain 0 0.945146412311782 0 0.880703330039978 prediction 0.890292824623563 Functional Gain - TCHP ENSG00000139437 CDS Human protein_coding chr12:110353227 chr12:110353227 nonsynonymous SNV 0.998 2 21 hm5C_associated_SNPs_131730 0 0 1 0 1 Cytosol 0 0.500231643921092 0.761406660079956 0.000463287842184856 hm5C_site_51788 DeepMRMD:0.761406660079956;iRNA_m5C:0.000463287842184856 51789 chr17 685847 685847 1 + G C HNSC 685847 + 685827 685867 41 AACGAGAGAAACAACCGCTCGAGGAGTCCGCATCCCGCGCT AACGAGAGAAACAACCGCTCCAGGAGTCCGCATCCCGCGCT Direct Gain 0 0.945141579424813 0 0.806095480918884 prediction 0.890283158849627 Functional Gain - MRM3 ENSG00000171861 CDS Human protein_coding chr17:685847 chr17:685847 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_131731 0 0 0 0 1 chromatin 0 0.500231642469653 0.612190961837768 0.00046328493930603 hm5C_site_51789 DeepMRMD:0.612190961837768;iRNA_m5C:0.00046328493930603 51790 chr14 24845708 24845708 1 + A G HNSC 24845708 - 24845688 24845728 41 AGGCCCGGTCTGTAGGATGGTGGGGGCCCCGTCTGGGGGTA AGGCCCGGTCTGTAGGATGGCGGGGGCCCCGTCTGGGGGTA Direct Gain 0 0.945118622331781 0 0.894416451454163 prediction 0.890237244663562 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24845708 chr14:24845708 synonymous SNV . 0 21 hm5C_associated_SNPs_131732 0 0 0 0 0 cytosol 0 0.500231643921009 0.788832902908326 0.000463287842018989 hm5C_site_51790 DeepMRMD:0.788832902908326;iRNA_m5C:0.000463287842018989 51791 chr2 181845428 181845428 1 + C G rs191441558 181845428 - 181845408 181845448 41 GGGCGAGGGCGCGAGCTCCCGGCGAGGCGGAGGGGACGCGG GGGCGAGGGCGCGAGCTCCCCGCGAGGCGGAGGGGACGCGG Direct Gain 0 0.945098116759666 0 0.920581340789795 prediction 0.890196233519332 Functional Gain - UBE2E3 ENSG00000170035 UTR5 Human protein_coding chr2:181845428 chr2:181845428 . . 0 21 hm5C_associated_SNPs_131733 0 0 0 0 0 Cytosol 0 0.50023164381809 0.84116268157959 0.000463287636180754 hm5C_site_51791 DeepMRMD:0.84116268157959;iRNA_m5C:0.000463287636180754 51792 chr22 24648958 24648958 1 + C G CESC 24648958 - 24648938 24648978 41 AGGTGGCAGGAAGGGGATCTGAGGAGGAGAACAGGGGGCCT AGGTGGCAGGAAGGGGATCTCAGGAGGAGAACAGGGGGCCT Direct Gain 0 0.945096731736528 0 0.929305613040924 prediction 0.890193463473057 Functional Gain - POM121L9P ENSG00000128262 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:24648958 chr22:24648958 . . 0 21 hm5C_associated_SNPs_131734 0 0 0 0 0 unknown 0 0.500231643921092 0.858611226081848 0.000463287842184856 hm5C_site_51792 DeepMRMD:0.858611226081848;iRNA_m5C:0.000463287842184856 51793 chr16 87723369 87723369 1 + C G BLCA 87723369 - 87723349 87723389 41 TGTCGTCGGGGGTCAGGTCGGAGGGAGTGGTGCCCTTGCGG TGTCGTCGGGGGTCAGGTCGCAGGGAGTGGTGCCCTTGCGG Direct Gain 0 0.945093652150872 0 0.914016008377075 prediction 0.890187304301743 Functional Gain - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87723369 chr16:87723369 nonsynonymous SNV 0.902 2 21 hm5C_associated_SNPs_131735 0 0 1 0 0 chromatin 0 0.500231645869733 0.82803201675415 0.000463291739466243 hm5C_site_51793 DeepMRMD:0.82803201675415;iRNA_m5C:0.000463291739466243 51794 chr2 29404515 29404515 1 + A C UCEC 29404515 + 29404495 29404535 41 AGGGAGCGTGAAGCTGCACGAGGGGTCTCAGGTCCTGCTCA AGGGAGCGTGAAGCTGCACGCGGGGTCTCAGGTCCTGCTCA Direct Gain 0 0.94508818544895 0 0.960644960403442 prediction 0.890176370897899 Functional Gain - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29404515 chr2:29404515 nonsynonymous SNV 0.985 0 21 hm5C_associated_SNPs_131736 0 0 0 0 1 nucleus 0 0.500232352446017 0.921289920806884 0.000464704892034318 hm5C_site_51794 DeepMRMD:0.921289920806884;iRNA_m5C:0.000464704892034318 51795 chr2 105858582 105858582 1 + C G KIRP 105858582 - 105858562 105858602 41 ATGAGGGTGACGGCGGTGAAGGGCATGCAGCAGAGGGACAG ATGAGGGTGACGGCGGTGAACGGCATGCAGCAGAGGGACAG Direct Gain 0 0.945084973412998 0 0.38288140296936 prediction 0.890169946825997 Functional Gain - GPR45 ENSG00000135973 CDS Human protein_coding chr2:105858582 chr2:105858582 synonymous SNV . 0 21 hm5C_associated_SNPs_131737 0 0 0 0 0 unknown 0 0.5002316439228 0 0.000463287845599458 hm5C_site_51795 DeepMRMD:0;iRNA_m5C:0.000463287845599458 51796 chr8 142146830 142146830 1 + G C LUSC 142146830 + 142146810 142146850 41 CCCCCAGAGCGCCAGAGCCTGAGGATGTCGCCGTCCCGGGC CCCCCAGAGCGCCAGAGCCTCAGGATGTCGCCGTCCCGGGC Direct Gain 0 0.945080340645403 0 0.957437694072723 prediction 0.890160681290806 Functional Gain - DENND3 ENSG00000105339 CDS Human protein_coding chr8:142146830 chr8:142146830 nonsynonymous SNV 0.014 4 21 hm5C_associated_SNPs_131738 0 0 0 0 1 Nucleus 0 0.500231643918437 0.914875388145446 0.000463287836873549 hm5C_site_51796 DeepMRMD:0.914875388145446;iRNA_m5C:0.000463287836873549 51797 chr11 63581129 63581129 1 + C G rs190647253 63581129 - 63581109 63581149 41 GTGGGCGATAGCAGTGGCCGGAGGACTGGCGCGCAGGCTTC GTGGGCGATAGCAGTGGCCGCAGGACTGGCGCGCAGGCTTC Direct Gain 0 0.945064893032744 0 0.862243890762329 prediction 0.890129786065488 Functional Gain - C11orf84 ENSG00000168005 UTR5 Human protein_coding chr11:63581129 chr11:63581129 . . 0 21 hm5C_associated_SNPs_131739 0 0 0 0 0 Ribosome 0 0.500231643921092 0.724487781524658 0.000463287842184856 hm5C_site_51797 DeepMRMD:0.724487781524658;iRNA_m5C:0.000463287842184856 51798 chr1 100614326 100614326 1 + T G UCEC 100614326 - 100614306 100614346 41 ATTTGGTAAAGCAGTTAACAAAACATTTTCCAAAGACACCA ATTTGGTAAAGCAGTTAACACAACATTTTCCAAAGACACCA Direct Gain 0 0.945047666319744 0 0.15714818239212 prediction 0.890095332639488 Functional Gain - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100614326 chr1:100614326 nonsynonymous SNV 0.980 1 21 hm5C_associated_SNPs_131740 0 0 0 0 0 chromatin 0 0.500231644632413 0 0.000463289264826194 hm5C_site_51798 DeepMRMD:0;iRNA_m5C:0.000463289264826194 51799 chr1 28562926 28562926 1 + G C STAD 28562926 + 28562906 28562946 41 GGGAAGCCGGTGGGGCCTTCGGAAAGAGAGAGCAGGCTGAA GGGAAGCCGGTGGGGCCTTCCGAAAGAGAGAGCAGGCTGAA Direct Gain 0 0.945031911516433 0 0.777917444705963 prediction 0.890063823032867 Functional Gain - ATPIF1 ENSG00000130770 CDS Human protein_coding chr1:28562926 chr1:28562926 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_131741 0 0 1 0 2 Ribosome 0 0.500231643921085 0.555834889411926 0.000463287842169757 hm5C_site_51799 DeepMRMD:0.555834889411926;iRNA_m5C:0.000463287842169757 51800 chr5 148808622 148808622 1 + G C rs183158806 148808622 + 148808602 148808642 41 GGTAAGTGCTGGGGGGTTGTGGGGGGCCATAACAGGAAGGA GGTAAGTGCTGGGGGGTTGTCGGGGGCCATAACAGGAAGGA Direct Gain 0 0.945028507567914 0 0.985760748386383 prediction 0.890057015135827 Functional Gain - CARMN ENSG00000208035;ENSG00000249669 downstream Human other chr5:148808622 chr5:148808622 . . 0 21 hm5C_associated_SNPs_131742 0 0 0 0 0 unknown 0 0.500231643921092 0.971521496772766 0.000463287842184856 hm5C_site_51800 DeepMRMD:0.971521496772766;iRNA_m5C:0.000463287842184856 51801 chr19 50912037 50912037 1 + C G BLCA 50912037 - 50912017 50912057 41 GGGGACGTCGTAGTACCTGGGAGGGGAGCAGCCGCGGCCGG GGGGACGTCGTAGTACCTGGCAGGGGAGCAGCCGCGGCCGG Direct Gain 0 0.945027091219218 0 0.942151308059692 prediction 0.890054182438436 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912037 chr19:50912037 nonsynonymous SNV 0.192 0 21 hm5C_associated_SNPs_131743 0 0 0 0 0 Nucleus 0 0.500231643921081 0.884302616119384 0.00046328784216132 hm5C_site_51801 DeepMRMD:0.884302616119384;iRNA_m5C:0.00046328784216132 51802 chr6 80816606 80816606 1 + G C LUAD 80816606 + 80816586 80816626 41 ATCCGGAGCCCCGGGAGTACGGTGAGCCCTGGGACTGCCCA ATCCGGAGCCCCGGGAGTACCGTGAGCCCTGGGACTGCCCA Direct Gain 0 0.945024826314857 0 0.822452485561371 prediction 0.890049652629714 Functional Gain - BCKDHB ENSG00000083123 CDS Human protein_coding chr6:80816606 chr6:80816606 nonsynonymous SNV 0.071 3 21 hm5C_associated_SNPs_131744 0 0 0 0 1 Ribosome 0 0.500231643913039 0.644904971122742 0.000463287826077075 hm5C_site_51802 DeepMRMD:0.644904971122742;iRNA_m5C:0.000463287826077075 51803 chr10 96305680 96305680 1 + T C rs113154675 96305680 + 96305660 96305700 41 CCCGGGTGAGTGTCCAGGCATGCCAGCGGAACGGCCCGCGG CCCGGGTGAGTGTCCAGGCACGCCAGCGGAACGGCCCGCGG Direct Gain 0 0.945004704526039 0 0.48168408870697 prediction 0.890009409052078 Functional Gain - HELLS ENSG00000119969 CDS Human protein_coding chr10:96305680 chr10:96305680 nonsynonymous SNV 0.539 3 21 hm5C_associated_SNPs_131745 0 0 1 0 1 Cytosol 0 0.500231643921091 0 0.000463287842181304 hm5C_site_51803 DeepMRMD:0;iRNA_m5C:0.000463287842181304 51804 chr14 93399135 93399135 1 + A G TGCT 93399135 - 93399115 93399155 41 CCTCGGGGTAGCCTCGGACCTGGAGGGGCAGGCCCGCCTCA CCTCGGGGTAGCCTCGGACCCGGAGGGGCAGGCCCGCCTCA Direct Gain 0 0.944999240663034 0 0.957771897315979 prediction 0.889998481326068 Functional Gain - CHGA ENSG00000100604 CDS Human protein_coding chr14:93399135 chr14:93399135 nonsynonymous SNV 0.045 0 21 hm5C_associated_SNPs_131746 0 0 0 0 0 exosome 0 0.500231643921093 0.915543794631958 0.000463287842185967 hm5C_site_51804 DeepMRMD:0.915543794631958;iRNA_m5C:0.000463287842185967 51805 chr11 48347283 48347283 1 + C G UCS 48347283 - 48347263 48347303 41 CAATGAAGTGGGCTCCACAGGTGGAGAGGGCTTTGCATCTC CAATGAAGTGGGCTCCACAGCTGGAGAGGGCTTTGCATCTC Direct Gain 0 0.944981854148053 0 0.805806756019592 prediction 0.889963708296107 Functional Gain - OR4C3 ENSG00000176547 CDS Human protein_coding chr11:48347283 chr11:48347283 nonsynonymous SNV 0.232 1 21 hm5C_associated_SNPs_131747 0 0 0 0 0 exosome 0 0.500231644177357 0.611613512039184 0.000463288354714875 hm5C_site_51805 DeepMRMD:0.611613512039184;iRNA_m5C:0.000463288354714875 51806 chr12 52115497 52115497 1 + C G BLCA 52115497 - 52115477 52115517 41 CGGGCCCGGATGGGGATGAAGAGGGAGTCCCGGCGGCCCTC CGGGCCCGGATGGGGATGAACAGGGAGTCCCGGCGGCCCTC Direct Gain 0 0.944981781179181 0 0.959226071834564 prediction 0.889963562358363 Functional Gain - SCN8A ENSG00000196876 CDS Human protein_coding chr12:52115497 chr12:52115497 synonymous SNV . 0 21 hm5C_associated_SNPs_131748 0 0 0 0 0 nucleus 0 0.500231643921092 0.918452143669128 0.000463287842184856 hm5C_site_51806 DeepMRMD:0.918452143669128;iRNA_m5C:0.000463287842184856 51807 chr4 55561719 55561719 1 + C G COAD 55561719 - 55561699 55561739 41 TTTTCCTGGATGGATGGATGGTGGAGACGGTTCCCCTGGAC TTTTCCTGGATGGATGGATGCTGGAGACGGTTCCCCTGGAC Direct Gain 0 0.944979911965841 0 0.806143879890442 prediction 0.889959823931681 Functional Gain - KIT ENSG00000157404 CDS Human protein_coding chr4:55561719 chr4:55561719 nonsynonymous SNV 0.270 4 21 hm5C_associated_SNPs_131749 0 0 0 0 0 Endoplasmic reticulum 0 0.500231645196372 0.612287759780884 0.000463290392744842 hm5C_site_51807 DeepMRMD:0.612287759780884;iRNA_m5C:0.000463290392744842 51808 chr9 135961787 135961787 1 + A G rs10901232 135961787 - 135961767 135961807 41 CCTTAGAGACTGTCCTGTCTTGGGGCCGGTAGCCCGGAGTG CCTTAGAGACTGTCCTGTCTCGGGGCCGGTAGCCCGGAGTG Direct Gain 0 0.944961532057713 0 0.949093103408813 prediction 0.889923064115427 Functional Gain - CELP ENSG00000170827 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:135961787 chr9:135961787 . . 0 21 hm5C_associated_SNPs_131750 0 0 0 0 0 unknown 0 0.500231643921092 0.898186206817626 0.000463287842184856 hm5C_site_51808 DeepMRMD:0.898186206817626;iRNA_m5C:0.000463287842184856 51809 chr11 2418430 2418430 1 + T C rs1049549 2418430 + 2418410 2418450 41 AGAGACTCAGCTTGGCCAACTTGGGGGGCTGTGTCCACCCA AGAGACTCAGCTTGGCCAACCTGGGGGGCTGTGTCCACCCA Direct Gain 0 0.944942787281851 0 0.669143199920654 prediction 0.889885574563702 Functional Gain - CD81 ENSG00000110651 UTR3 Human protein_coding chr11:2418430 chr11:2418430 . . 0 21 hm5C_associated_SNPs_131751 0 0 1 0 0 Ribosome 0 0.500231850192239 0.338286399841308 0.000463700384477628 hm5C_site_51809 DeepMRMD:0.338286399841308;iRNA_m5C:0.000463700384477628 51810 chr19 33864796 33864796 1 + G C rs545000719 33864796 + 33864776 33864816 41 TGGGGGCAGGCGGGCTAGAGGAGCAGGTAAGGAGGCTGCGG TGGGGGCAGGCGGGCTAGAGCAGCAGGTAAGGAGGCTGCGG Direct Gain 0 0.94492967032629 0 0.798227548599243 prediction 0.889859340652581 Functional Gain - CEBPG ENSG00000153879 UTR5 Human protein_coding chr19:33864796 chr19:33864796 . . 0 21 hm5C_associated_SNPs_131752 0 0 1 0 1 Cytosol 0 0.500231643921092 0.596455097198486 0.000463287842184856 hm5C_site_51810 DeepMRMD:0.596455097198486;iRNA_m5C:0.000463287842184856 51811 chr1 212792760 212792760 1 + A C UCS 212792760 + 212792740 212792780 41 CTCAGATTGAGGAGCTCAAGAACGAGAAGCAGCATTTGATA CTCAGATTGAGGAGCTCAAGCACGAGAAGCAGCATTTGATA Direct Gain 0 0.944925678177673 0 0.520255744457245 prediction 0.889851356355347 Functional Gain - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212792760 chr1:212792760 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_131753 0 0 1 0 1 Cytoplasm 0 0.500231643850238 0.04051148891449 0.000463287700476878 hm5C_site_51811 DeepMRMD:0.04051148891449;iRNA_m5C:0.000463287700476878 51812 chr21 37721642 37721642 1 + A C UCEC 37721642 + 37721622 37721662 41 GTGTTGGAGTGGTTGGAATTATAGAGTGTAATTTCCTTAAG GTGTTGGAGTGGTTGGAATTCTAGAGTGTAATTTCCTTAAG Direct Gain 0 0.944913957876194 0 0.84119701385498 prediction 0.889827915752389 Functional Gain - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37721642 chr21:37721642 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131754 0 0 1 0 2 Cytosol 0 0.500231643831902 0.68239402770996 0.000463287663803325 hm5C_site_51812 DeepMRMD:0.68239402770996;iRNA_m5C:0.000463287663803325 51813 chr2 130948170 130948170 1 + G C PRAD 130948170 + 130948150 130948190 41 TGCCCAAGGGGGGCGGGCCTGGGAAGAGCCCTACACGGGGC TGCCCAAGGGGGGCGGGCCTCGGAAGAGCCCTACACGGGGC Direct Gain 0 0.944908942288621 0 0.958315968513489 prediction 0.889817884577243 Functional Gain - MZT2B ENSG00000152082 CDS Human protein_coding chr2:130948170 chr2:130948170 nonsynonymous SNV 0.253 3 21 hm5C_associated_SNPs_131755 0 0 1 0 0 Ribosome 0 0.500231643921092 0.916631937026978 0.000463287842184412 hm5C_site_51813 DeepMRMD:0.916631937026978;iRNA_m5C:0.000463287842184412 51814 chr11 1265570 1265570 1 + C G rs533945003 1265570 - 1265550 1265590 41 GGGTGCCAGCAGTTGCCTGGGTGGAGGAGGCGGTGGCCGTG GGGTGCCAGCAGTTGCCTGGCTGGAGGAGGCGGTGGCCGTG Direct Gain 0 0.944874784791184 0 0.634078502655029 prediction 0.889749569582369 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1265570 chr11:1265570 nonsynonymous SNV 0.007 0 21 hm5C_associated_SNPs_131756 0 0 0 0 0 Endoplasmic reticulum 0 0.50023164355824 0.268157005310058 0.000463287116479805 hm5C_site_51814 DeepMRMD:0.268157005310058;iRNA_m5C:0.000463287116479805 51815 chr7 140125860 140125860 1 + T C GBM 140125860 + 140125840 140125880 41 CGCAACAGCCTGCACCTATATGGGGAGAGTGCCCTGAACGG CGCAACAGCCTGCACCTATACGGGGAGAGTGCCCTGAACGG Direct Gain 0 0.94486985353127 0 0.818740010261536 prediction 0.889739707062539 Functional Gain - RAB19 ENSG00000146955 CDS Human protein_coding chr7:140125860 chr7:140125860 synonymous SNV . 0 21 hm5C_associated_SNPs_131757 0 0 0 0 0 exosome 0 0.500231643813322 0.637480020523072 0.000463287626643494 hm5C_site_51815 DeepMRMD:0.637480020523072;iRNA_m5C:0.000463287626643494 51816 chr2 187351184 187351184 1 + A C COAD 187351184 + 187351164 187351204 41 AAGAAGGAGAAGATTATCGAAGTGAGTACCCACCCCTCCCC AAGAAGGAGAAGATTATCGACGTGAGTACCCACCCCTCCCC Direct Gain 0 0.944849196395151 0 0.618784248828888 prediction 0.889698392790303 Functional Gain - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187351184 chr2:187351184 nonsynonymous SNV 0.907 1 21 hm5C_associated_SNPs_131758 0 0 1 0 1 Ribosome 0 0.500231643921092 0.237568497657776 0.000463287842184634 hm5C_site_51816 DeepMRMD:0.237568497657776;iRNA_m5C:0.000463287842184634 51817 chr14 21167607 21167607 1 + C G HNSC 21167607 - 21167587 21167627 41 ACATGCCATCCTGGCCATAGGAGGGCTGGACCAGCCCCAGC ACATGCCATCCTGGCCATAGCAGGGCTGGACCAGCCCCAGC Direct Gain 0 0.944809755122427 0 0.857419371604919 prediction 0.889619510244854 Functional Gain - RNASE4 ENSG00000258818 CDS Human protein_coding chr14:21167607 chr14:21167607 nonsynonymous SNV 0.950 2 21 hm5C_associated_SNPs_131759 0 0 0 0 0 cytosol 0 0.500232136787723 0.714838743209838 0.000464273575445873 hm5C_site_51817 DeepMRMD:0.714838743209838;iRNA_m5C:0.000464273575445873 51818 chr20 20007466 20007466 1 + T C OV 20007466 + 20007446 20007486 41 GCTCAGTAGCTAGGGAAGAATGGCACGGGCACGTCACAGCT GCTCAGTAGCTAGGGAAGAACGGCACGGGCACGTCACAGCT Direct Gain 0 0.944795453308807 0 0.88043087720871 prediction 0.889590906617614 Functional Gain - NAA20 ENSG00000173418 CDS Human protein_coding chr20:20007466 chr20:20007466 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_131760 0 0 1 0 2 Ribosome 0 0.500231643963108 0.76086175441742 0.000463287926216305 hm5C_site_51818 DeepMRMD:0.76086175441742;iRNA_m5C:0.000463287926216305 51819 chr5 57791147 57791147 1 + G C rs575526071 57791147 + 57791127 57791167 41 TGGAAGGAGGGAGAGGTTCAGGGAAAAAAAAAATATCAGGT TGGAAGGAGGGAGAGGTTCACGGAAAAAAAAAATATCAGGT Direct Gain 0 0.944783217241106 0 0.82452654838562 prediction 0.889566434482211 Functional Gain - GAPT ENSG00000175857 UTR3 Human protein_coding chr5:57791147 chr5:57791147 . . 0 21 hm5C_associated_SNPs_131761 0 0 0 0 0 exosome 0 0.500231643921092 0.64905309677124 0.000463287842184856 hm5C_site_51819 DeepMRMD:0.64905309677124;iRNA_m5C:0.000463287842184856 51820 chr17 8192649 8192649 1 + T C rs138959557 8192649 + 8192629 8192669 41 AGTCTGTTCAGCCTCTCAGTTTGGAGAACCTGGCCCTGAGG AGTCTGTTCAGCCTCTCAGTCTGGAGAACCTGGCCCTGAGG Direct Gain 0 0.944780712044552 0 0.959593296051025 prediction 0.889561424089104 Functional Gain - RANGRF ENSG00000108961 CDS Human protein_coding chr17:8192649 chr17:8192649 synonymous SNV . 0 21 hm5C_associated_SNPs_131762 2 0 1 0 2 Ribosome 0 0.500231641736899 0.91918659210205 0.000463283473798093 hm5C_site_51820 DeepMRMD:0.91918659210205;iRNA_m5C:0.000463283473798093 not specified not specified 51821 chr2 211512717 211512717 1 + T G rs538878532 211512717 - 211512697 211512737 41 CATCCAAGACAGCTGAGAAGATGGAGCGATCCTCAGCCCTG CATCCAAGACAGCTGAGAAGCTGGAGCGATCCTCAGCCCTG Direct Gain 0 0.944774135634125 0 0.827881813049316 prediction 0.889548271268251 Functional Gain - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211512717 chr2:211512717 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131763 0 0 0 0 0 Nucleus 0 0.500231656249406 0.655763626098632 0.000463312498812929 hm5C_site_51821 DeepMRMD:0.655763626098632;iRNA_m5C:0.000463312498812929 51822 chr6 52947370 52947370 1 + T C LUSC 52947370 + 52947350 52947390 41 GTGACTTGGACCTCAGATCATTGGAGCAGTTGTCGCTGGTG GTGACTTGGACCTCAGATCACTGGAGCAGTTGTCGCTGGTG Direct Gain 0 0.944729746673434 0 0.598734557628632 prediction 0.889459493346869 Functional Gain - FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52947370 chr6:52947370 synonymous SNV . 0 21 hm5C_associated_SNPs_131764 0 0 1 0 2 Cytosol 0 0.500231643925738 0.197469115257264 0.000463287851476757 hm5C_site_51822 DeepMRMD:0.197469115257264;iRNA_m5C:0.000463287851476757 51823 chr16 12618661 12618661 1 + A G LUSC 12618661 - 12618641 12618681 41 CTGGATGAGGGTCTCCTTCTTGGGGCTGGCAGCGAACTCGG CTGGATGAGGGTCTCCTTCTCGGGGCTGGCAGCGAACTCGG Direct Gain 0 0.944720858286392 0 0.962660610675812 prediction 0.889441716572784 Functional Gain - SNX29 ENSG00000048471 CDS Human protein_coding chr16:12618661 chr16:12618661 nonsynonymous SNV 0.973 0 21 hm5C_associated_SNPs_131765 0 0 0 0 0 Nucleus 0 0.500231643921092 0.925321221351624 0.000463287842184856 hm5C_site_51823 DeepMRMD:0.925321221351624;iRNA_m5C:0.000463287842184856 51824 chr3 38349208 38349208 1 + T C rs9873449 38349208 + 38349188 38349228 41 ACGCCATCAGCAGCATTTCTTTGGGTGAGACTGGGCCTCAA ACGCCATCAGCAGCATTTCTCTGGGTGAGACTGGGCCTCAA Direct Gain 0 0.944706076411825 0 0.975933015346527 prediction 0.88941215282365 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38349208 chr3:38349208 synonymous SNV . 0 21 hm5C_associated_SNPs_131766 0 0 0 0 1 exosome 0 0.500241738479448 0.951866030693054 0.000483476958896611 hm5C_site_51824 DeepMRMD:0.951866030693054;iRNA_m5C:0.000483476958896611 51825 chr10 91143275 91143275 1 + G C KIRP 91143275 + 91143255 91143295 41 AACACCTGAAAGGCCAGAATGAGGAAGCCCTGGTCAGCTTG AACACCTGAAAGGCCAGAATCAGGAAGCCCTGGTCAGCTTG Direct Gain 0 0.944695501622768 0 0.957393109798431 prediction 0.889391003245537 Functional Gain - IFIT1B ENSG00000204010 CDS Human protein_coding chr10:91143275 chr10:91143275 nonsynonymous SNV 0.892 1 21 hm5C_associated_SNPs_131767 0 0 0 0 0 exosome 0 0.500231643970403 0.914786219596862 0.000463287940805523 hm5C_site_51825 DeepMRMD:0.914786219596862;iRNA_m5C:0.000463287940805523 51826 chr6 53516940 53516940 1 + A G LUAD 53516940 - 53516920 53516960 41 GCCGAAGACGCCCCTGGAGGTGGCGCGCTGCTGCCACGCTA GCCGAAGACGCCCCTGGAGGCGGCGCGCTGCTGCCACGCTA Direct Gain 0 0.944695432265658 0 0.845923006534576 prediction 0.889390864531316 Functional Gain - KLHL31 ENSG00000124743 CDS Human protein_coding chr6:53516940 chr6:53516940 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_131768 0 0 0 0 0 exosome 0 0.500231643921097 0.691846013069152 0.000463287842194626 hm5C_site_51826 DeepMRMD:0.691846013069152;iRNA_m5C:0.000463287842194626 51827 chr7 75933445 75933445 1 + T C rs34771861 75933445 + 75933425 75933465 41 TTCGAGTCGCGGGCCCAGCTTGGGGGCCCAGAAGCTGCAAA TTCGAGTCGCGGGCCCAGCTCGGGGGCCCAGAAGCTGCAAA Direct Gain 0 0.944690186383594 0 0.951434850692749 prediction 0.889380372767189 Functional Gain - HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933445 chr7:75933445 synonymous SNV . 0 21 hm5C_associated_SNPs_131769 2 0 1 0 0 Cytosol 0 0.500231643943449 0.902869701385498 0.000463287886898645 hm5C_site_51827 DeepMRMD:0.902869701385498;iRNA_m5C:0.000463287886898645 not specified not specified 51828 chr19 17691625 17691625 1 + A G rs151321150 17691625 - 17691605 17691645 41 GCCAGCAGTTTGCGGGCGCCTTGCAGGGAGATCACGTAGGC GCCAGCAGTTTGCGGGCGCCCTGCAGGGAGATCACGTAGGC Direct Gain 0 0.944685857898377 0 0.82088315486908 prediction 0.889371715796754 Functional Gain - COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17691625 chr19:17691625 synonymous SNV . 0 21 hm5C_associated_SNPs_131770 0 0 0 0 0 Ribosome 0 0.500231643954359 0.64176630973816 0.000463287908717636 hm5C_site_51828 DeepMRMD:0.64176630973816;iRNA_m5C:0.000463287908717636 51829 chr2 242142787 242142787 1 + C G CESC 242142787 - 242142767 242142807 41 GACTTGGCGCTGGTTGAGGCGTGGAGCCTGCGGGCCCTCTG GACTTGGCGCTGGTTGAGGCCTGGAGCCTGCGGGCCCTCTG Direct Gain 0 0.944659937713621 0 0.625632166862488 prediction 0.889319875427242 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242142787 chr2:242142787 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131771 0 0 0 0 0 chromatin 0 0.500317622149429 0.251264333724976 0.000635244298858417 hm5C_site_51829 DeepMRMD:0.251264333724976;iRNA_m5C:0.000635244298858417 51830 chr19 4280112 4280112 1 + C G LUSC 4280112 - 4280092 4280132 41 GTCCGGGGTGGGCGGCTGCGGAGGGGGCCTCCGACCCCCAA GTCCGGGGTGGGCGGCTGCGCAGGGGGCCTCCGACCCCCAA Direct Gain 0 0.944644336645188 0 0.984601616859436 prediction 0.889288673290375 Functional Gain - SHD ENSG00000105251 CDS Human protein_coding chr19:4280112 chr19:4280112 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_131772 0 0 0 0 0 exosome 0 0.500231643921132 0.969203233718872 0.000463287842263238 hm5C_site_51830 DeepMRMD:0.969203233718872;iRNA_m5C:0.000463287842263238 51831 chrX 26212720 26212720 1 + A C COAD 26212720 + 26212700 26212740 41 TGGCCTTTGGCGTTGAATTGAAAGAAATGGATTCCAGCGGC TGGCCTTTGGCGTTGAATTGCAAGAAATGGATTCCAGCGGC Direct Gain 0 0.94464368120569 0 0.402451723814011 prediction 0.88928736241138 Functional Gain - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26212720 chrX:26212720 nonsynonymous SNV 0.004 3 21 hm5C_associated_SNPs_131773 0 0 0 0 0 unknown 0 0.500231643165969 0 0.000463286331937374 hm5C_site_51831 DeepMRMD:0;iRNA_m5C:0.000463286331937374 51832 chr17 8215790 8215790 1 + T G KIRP 8215790 - 8215770 8215810 41 CCGCACAGTGCCAGGAGCTGAGGCAGAGCCATTCTGAGCCA CCGCACAGTGCCAGGAGCTGCGGCAGAGCCATTCTGAGCCA Direct Gain 0 0.944622281272616 0 0.58024388551712 prediction 0.889244562545231 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8215790 chr17:8215790 nonsynonymous SNV 0.976 3 21 hm5C_associated_SNPs_131774 0 0 0 0 0 exosome 0 0.500231643921076 0.16048777103424 0.000463287842151994 hm5C_site_51832 DeepMRMD:0.16048777103424;iRNA_m5C:0.000463287842151994 51833 chr11 57310803 57310803 1 + G C BLCA 57310803 + 57310783 57310823 41 AGGCCAAACATGGTGCAAAAGAGGAGGCTGATGCAAAAGAG AGGCCAAACATGGTGCAAAACAGGAGGCTGATGCAAAAGAG Direct Gain 0 0.944609041597478 0 0.614451467990875 prediction 0.889218083194956 Functional Gain - SMTNL1 ENSG00000214872 CDS Human protein_coding chr11:57310803 chr11:57310803 nonsynonymous SNV 0.161 0 21 hm5C_associated_SNPs_131775 0 0 0 0 1 exosome 0 0.500231719434499 0.22890293598175 0.000463438868997246 hm5C_site_51833 DeepMRMD:0.22890293598175;iRNA_m5C:0.000463438868997246 51834 chr20 62871235 62871235 1 + C G OV 62871235 - 62871215 62871255 41 ATGTGCGGAAGGCGGATATTGGCGAGACTTTGGATGAGGGC ATGTGCGGAAGGCGGATATTCGCGAGACTTTGGATGAGGGC Direct Gain 0 0.944602148388442 0 0.806271433830261 prediction 0.889204296776884 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62871235 chr20:62871235 synonymous SNV . 0 21 hm5C_associated_SNPs_131776 0 0 0 0 0 exosome 0 0.500231643921247 0.612542867660522 0.000463287842493942 hm5C_site_51834 DeepMRMD:0.612542867660522;iRNA_m5C:0.000463287842493942 51835 chr7 905656 905656 1 + T C COAD 905656 + 905636 905676 41 ACGGCGCTGATGAGTCTGTTTGGGATCCCGCTGTGGTACTT ACGGCGCTGATGAGTCTGTTCGGGATCCCGCTGTGGTACTT Direct Gain 0 0.944598005543253 0 0.910581409931183 prediction 0.889196011086505 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:905656 chr7:905656 synonymous SNV . 0 21 hm5C_associated_SNPs_131777 0 0 1 0 2 Endoplasmic reticulum 0 0.500231643905034 0.821162819862366 0.000463287810068103 hm5C_site_51835 DeepMRMD:0.821162819862366;iRNA_m5C:0.000463287810068103 51836 chr5 118969960 118969960 1 + C G rs328694 118969960 - 118969940 118969980 41 TCTGGTGGACACATCAGAGGGGGGAGTACCTACCCTCACAA TCTGGTGGACACATCAGAGGCGGGAGTACCTACCCTCACAA Direct Gain 0 0.944589100778149 0 0.891399741172791 prediction 0.889178201556298 Functional Gain - FAM170A ENSG00000164334 CDS Human protein_coding chr5:118969960 chr5:118969960 nonsynonymous SNV 0.157 3 21 hm5C_associated_SNPs_131778 0 0 0 0 0 exosome 0 0.500231643589148 0.782799482345582 0.000463287178295024 hm5C_site_51836 DeepMRMD:0.782799482345582;iRNA_m5C:0.000463287178295024 51837 chr3 183910898 183910898 1 + G C CESC 183910898 + 183910878 183910918 41 GTCCTTTTCCAGGGCGGCCTGAGGAGGAGTACCGTCACCAG GTCCTTTTCCAGGGCGGCCTCAGGAGGAGTACCGTCACCAG Direct Gain 0 0.944584774230964 0 0.947264909744263 prediction 0.889169548461928 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183910898 chr3:183910898 nonsynonymous SNV 0.858 2 21 hm5C_associated_SNPs_131779 0 0 1 0 1 Cytosol 0 0.500231643921092 0.894529819488526 0.000463287842184856 hm5C_site_51837 DeepMRMD:0.894529819488526;iRNA_m5C:0.000463287842184856 51838 chr6 1313980 1313980 1 + C G rs147255181 1313980 - 1313960 1314000 41 GGGAGAGGTGCAAGCAGGAGGGGCGGCGCGGTCGGTGGCAC GGGAGAGGTGCAAGCAGGAGCGGCGGCGCGGTCGGTGGCAC Direct Gain 0 0.944583720893111 0 0.544834554195404 prediction 0.889167441786223 Functional Gain - FOXQ1 ENSG00000164379 CDS Human protein_coding chr6:1313980 chr6:1313980 synonymous SNV . 0 21 hm5C_associated_SNPs_131780 0 0 0 0 0 exosome 0 0.500231643921378 0.0896691083908081 0.000463287842756621 hm5C_site_51838 DeepMRMD:0.0896691083908081;iRNA_m5C:0.000463287842756621 51839 chr14 24884983 24884983 1 + T G LAML 24884983 - 24884963 24885003 41 GCGTGTAAGGGGAGCAGGAGAAGGAAAGGGAGACAGGGGGG GCGTGTAAGGGGAGCAGGAGCAGGAAAGGGAGACAGGGGGG Direct Gain 0 0.944578965821889 0 0.745370924472809 prediction 0.889157931643778 Functional Gain - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24884983 chr14:24884983 nonsynonymous SNV 0.981 3 21 hm5C_associated_SNPs_131781 0 0 0 0 0 Exosome 0 0.500231643921487 0.490741848945618 0.000463287842973337 hm5C_site_51839 DeepMRMD:0.490741848945618;iRNA_m5C:0.000463287842973337 51840 chr12 14927994 14927994 1 + T C rs2195199 14927994 + 14927974 14928014 41 TGTGTAGTCGCGGGGACATGTCGGATGGCCCCAGGGGAGGG TGTGTAGTCGCGGGGACATGCCGGATGGCCCCAGGGGAGGG Direct Gain 0 0.944578655733399 0 0.794401288032532 prediction 0.889157311466798 Functional Gain - H2AFJ ENSG00000246705 UTR3 Human protein_coding chr12:14927994 chr12:14927994 . . 0 21 hm5C_associated_SNPs_131782 0 0 1 0 0 Ribosome 0 0.500231685431019 0.588802576065064 0.000463370862038071 hm5C_site_51840 DeepMRMD:0.588802576065064;iRNA_m5C:0.000463370862038071 51841 chr5 3599657 3599657 1 + G C LUAD 3599657 + 3599637 3599677 41 CATGGGGAGCGCGCAGCAAGGACCAGGAAGATGGAGCGCTC CATGGGGAGCGCGCAGCAAGCACCAGGAAGATGGAGCGCTC Direct Gain 0 0.944575423262687 0 0.772561728954315 prediction 0.889150846525373 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3599657 chr5:3599657 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131783 0 0 0 0 0 exosome 0 0.500231631422236 0.54512345790863 0.000463262844472956 hm5C_site_51841 DeepMRMD:0.54512345790863;iRNA_m5C:0.000463262844472956 51842 chr1 158450150 158450150 1 + T C UCEC 158450150 + 158450130 158450170 41 CTTATGAGCTGGCAGGTGTGTGGAAAACTGGCAGCTGCCTG CTTATGAGCTGGCAGGTGTGCGGAAAACTGGCAGCTGCCTG Direct Gain 0 0.944569080422905 0 0.535506546497345 prediction 0.88913816084581 Functional Gain - OR10R2 ENSG00000198965 CDS Human protein_coding chr1:158450150 chr1:158450150 synonymous SNV . 0 21 hm5C_associated_SNPs_131784 0 0 0 0 0 unknown 0 0.500231643919175 0.0710130929946899 0.00046328783834948 hm5C_site_51842 DeepMRMD:0.0710130929946899;iRNA_m5C:0.00046328783834948 51843 chr19 45650165 45650165 1 + T C rs375701824 45650165 + 45650145 45650185 41 GCAGGCGTCCTGGGTGGTGGTGGGATGGTCCCCTGTGGCCC GCAGGCGTCCTGGGTGGTGGCGGGATGGTCCCCTGTGGCCC Direct Gain 0 0.94455950650732 0 0.968536555767059 prediction 0.88911901301464 Functional Gain - PPP1R37 ENSG00000104866 UTR3 Human protein_coding chr19:45650165 chr19:45650165 . . 0 21 hm5C_associated_SNPs_131785 0 0 1 0 0 Ribosome 0 0.500231643928157 0.937073111534118 0.000463287856314443 hm5C_site_51843 DeepMRMD:0.937073111534118;iRNA_m5C:0.000463287856314443 51844 chr6 137187785 137187785 1 + T C UCEC 137187785 + 137187765 137187805 41 GTGATCAGACTCTGAGAATATGGGATGTGAAGGCAGCAGGA GTGATCAGACTCTGAGAATACGGGATGTGAAGGCAGCAGGA Direct Gain 0 0.94453994543238 0 0.787153363227844 prediction 0.88907989086476 Functional Gain - PEX7 ENSG00000112357 CDS Human protein_coding chr6:137187785 chr6:137187785 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_131786 0 0 1 1 2 Ribosome 0 0.500231444334956 0.574306726455688 0.000462888669911621 hm5C_site_51844 DeepMRMD:0.574306726455688;iRNA_m5C:0.000462888669911621 51845 chr17 39240741 39240741 1 + T C UCEC 39240741 + 39240721 39240761 41 GCTGCTGTATGTCCAGCTGCTGCAAGCCCCAGTGCTGCCAG GCTGCTGTATGTCCAGCTGCCGCAAGCCCCAGTGCTGCCAG Direct Gain 0 0.944523497402754 0 0.894426882266998 prediction 0.889046994805508 Functional Gain - KRTAP4-7 ENSG00000240871 CDS Human protein_coding chr17:39240741 chr17:39240741 nonsynonymous SNV 0.578 2 21 hm5C_associated_SNPs_131787 0 0 0 0 0 unknown 0 0.500231645489259 0.788853764533996 0.000463290978517827 hm5C_site_51845 DeepMRMD:0.788853764533996;iRNA_m5C:0.000463290978517827 51846 chr11 64884705 64884705 1 + C G HNSC 64884705 - 64884685 64884725 41 GAGCCGGACCGCAGCTTCTGGAGGAGCTGGATAATGCCCCG GAGCCGGACCGCAGCTTCTGCAGGAGCTGGATAATGCCCCG Direct Gain 0 0.944494292360978 0 0.859187424182892 prediction 0.888988584721957 Functional Gain - ZNHIT2 ENSG00000174276 CDS Human protein_coding chr11:64884705 chr11:64884705 nonsynonymous SNV 0.151 0 21 hm5C_associated_SNPs_131788 0 0 0 0 0 Ribosome 0 0.500232496751625 0.718374848365784 0.000464993503249023 hm5C_site_51846 DeepMRMD:0.718374848365784;iRNA_m5C:0.000464993503249023 51847 chr7 120629789 120629789 1 + G C HNSC 120629789 + 120629769 120629809 41 ACTCTGACCCTCCGAGGGTCGAGGAAGCTCACAGCCGCTGC ACTCTGACCCTCCGAGGGTCCAGGAAGCTCACAGCCGCTGC Direct Gain 0 0.94449224213581 0 0.911698818206787 prediction 0.888984484271619 Functional Gain - CPED1 ENSG00000106034 CDS Human protein_coding chr7:120629789 chr7:120629789 synonymous SNV . 0 21 hm5C_associated_SNPs_131789 0 0 1 0 0 chromatin 0 0.500232077667294 0.823397636413574 0.000464155334588101 hm5C_site_51847 DeepMRMD:0.823397636413574;iRNA_m5C:0.000464155334588101 51848 chr7 63774355 63774355 1 + G C rs566036953 63774355 + 63774335 63774375 41 AGAGGCGGCCTCTTCAATATGGCGGGGCCTTTGTCTCCTAG AGAGGCGGCCTCTTCAATATCGCGGGGCCTTTGTCTCCTAG Direct Gain 0 0.94446792663021 0 0.725692451000214 prediction 0.88893585326042 Functional Gain - ZNF736 ENSG00000234444 UTR5 Human protein_coding chr7:63774355 chr7:63774355 . . 0 21 hm5C_associated_SNPs_131790 0 0 1 0 0 nucleus 0 0.500231643921092 0.451384902000428 0.000463287842184856 hm5C_site_51848 DeepMRMD:0.451384902000428;iRNA_m5C:0.000463287842184856 51849 chr1 113243232 113243232 1 + G C rs551453724 113243232 + 113243212 113243252 41 TCCAAGGGACAGGAAGGCTGGGGGAGGGAGTTTACAACCCA TCCAAGGGACAGGAAGGCTGCGGGAGGGAGTTTACAACCCA Direct Gain 0 0.944459324970565 0 0.755423307418823 prediction 0.88891864994113 Functional Gain - MOV10 ENSG00000155363 UTR3 Human protein_coding chr1:113243232 chr1:113243232 . . 0 21 hm5C_associated_SNPs_131791 0 0 1 0 1 Cytosol 0 0.500231643241744 0.510846614837646 0.000463286483487702 hm5C_site_51849 DeepMRMD:0.510846614837646;iRNA_m5C:0.000463286483487702 51850 chr20 377240 377240 1 + A G LUSC 377240 - 377220 377260 41 CCTGGGCAGCCTCCCAGAGATGGGATCGGGTTGGGGCTAAG CCTGGGCAGCCTCCCAGAGACGGGATCGGGTTGGGGCTAAG Direct Gain 0 0.944451137524307 0 0.509510219097137 prediction 0.888902275048615 Functional Gain - TRIB3 ENSG00000101255 CDS Human protein_coding chr20:377240 chr20:377240 nonsynonymous SNV 0.514 0 21 hm5C_associated_SNPs_131792 0 0 0 0 0 Ribosome 0 0.500231643921094 0.019020438194274 0.000463287842188409 hm5C_site_51850 DeepMRMD:0.019020438194274;iRNA_m5C:0.000463287842188409 51851 chr3 112991959 112991959 1 + C G rs11710894 112991959 - 112991939 112991979 41 AGCTTGGCACTCTGGCCCCAGGGGATGACCAGCTGGGATAG AGCTTGGCACTCTGGCCCCACGGGATGACCAGCTGGGATAG Direct Gain 0 0.944420427602117 0 0.914147913455963 prediction 0.888840855204233 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112991959 chr3:112991959 synonymous SNV . 0 21 hm5C_associated_SNPs_131793 0 0 0 0 0 nucleoplasm 0 0.500232995730214 0.828295826911926 0.000465991460427695 hm5C_site_51851 DeepMRMD:0.828295826911926;iRNA_m5C:0.000465991460427695 51852 chr22 50957092 50957092 1 + G C LUSC 50957092 + 50957072 50957112 41 TCCCAGACACCGGGAGGACTGAGGAGCAGCCAATGGAAGTT TCCCAGACACCGGGAGGACTCAGGAGCAGCCAATGGAAGTT Direct Gain 0 0.944406017935422 0 0.881131529808044 prediction 0.888812035870845 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50957092 chr22:50957092 nonsynonymous SNV 0.936 2 21 hm5C_associated_SNPs_131794 0 0 1 0 2 Cytosol 0 0.500231643925952 0.762263059616088 0.000463287851904637 hm5C_site_51852 DeepMRMD:0.762263059616088;iRNA_m5C:0.000463287851904637 51853 chr14 24884524 24884524 1 + C G CESC 24884524 - 24884504 24884544 41 CATCAGGGAGGAGGGGTTTTGAGGTATAGGCTATGGGGTGC CATCAGGGAGGAGGGGTTTTCAGGTATAGGCTATGGGGTGC Direct Gain 0 0.944399800709959 0 0.860189318656921 prediction 0.888799601419918 Functional Gain - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24884524 chr14:24884524 stopgain 1.000 0 21 hm5C_associated_SNPs_131795 0 0 0 0 0 Exosome 0 0.50023165991593 0.720378637313842 0.000463319831860431 hm5C_site_51853 DeepMRMD:0.720378637313842;iRNA_m5C:0.000463319831860431 51854 chr5 140559192 140559192 1 + A C SKCM 140559192 + 140559172 140559212 41 GCTGGACTACGAGGCCCTGCAGGCGTTCGAGTTCCGGGTGG GCTGGACTACGAGGCCCTGCCGGCGTTCGAGTTCCGGGTGG Direct Gain 0 0.944379186999327 0 0.9192174077034 prediction 0.888758373998654 Functional Gain - PCDHB8 ENSG00000120322 CDS Human protein_coding chr5:140559192 chr5:140559192 nonsynonymous SNV 0.912 3 21 hm5C_associated_SNPs_131796 0 0 0 0 0 exosome 0 0.50023164452846 0.8384348154068 0.000463289056920946 hm5C_site_51854 DeepMRMD:0.8384348154068;iRNA_m5C:0.000463289056920946 51855 chr21 37518591 37518591 1 + G C LUAD 37518591 + 37518571 37518611 41 TTGGGGGTCACGGTCTTATCGAGGATCCTGGCCAGGCGTCT TTGGGGGTCACGGTCTTATCCAGGATCCTGGCCAGGCGTCT Direct Gain 0 0.944378522404034 0 0.955197870731354 prediction 0.888757044808068 Functional Gain - CBR3 ENSG00000159231 CDS Human protein_coding chr21:37518591 chr21:37518591 synonymous SNV . 0 21 hm5C_associated_SNPs_131797 0 0 1 0 0 exosome 0 0.500231643921635 0.910395741462708 0.000463287843270876 hm5C_site_51855 DeepMRMD:0.910395741462708;iRNA_m5C:0.000463287843270876 51856 chr2 219204769 219204769 1 + A G SKCM 219204769 - 219204749 219204789 41 GTTGTCCGAGAGGACAGGGATGGGAAGCACCTTCACTCCTG GTTGTCCGAGAGGACAGGGACGGGAAGCACCTTCACTCCTG Direct Gain 0 0.944371038881885 0 0.783773422241211 prediction 0.88874207776377 Functional Gain - PNKD ENSG00000127838 CDS Human protein_coding chr2:219204769 chr2:219204769 nonsynonymous SNV 0.997 2 21 hm5C_associated_SNPs_131798 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921416 0.567546844482422 0.000463287842832116 hm5C_site_51856 DeepMRMD:0.567546844482422;iRNA_m5C:0.000463287842832116 51857 chr8 121381663 121381663 1 + A G SKCM 121381663 - 121381643 121381683 41 CCAGGCTGGCCAGAAGGACCTTGGGGTCCAGGAACCCCCAG CCAGGCTGGCCAGAAGGACCCTGGGGTCCAGGAACCCCCAG Direct Gain 0 0.944366382012573 0 0.806180000305176 prediction 0.888732764025147 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121381663 chr8:121381663 synonymous SNV . 0 21 hm5C_associated_SNPs_131799 0 0 0 0 0 Ribosome 0 0.500231644019885 0.612360000610352 0.000463288039770804 hm5C_site_51857 DeepMRMD:0.612360000610352;iRNA_m5C:0.000463288039770804 51858 chr7 73085662 73085662 1 + C G rs527704829 73085662 - 73085642 73085682 41 CGAGGGCCGAGGGCTCAGCAGGGGGGCCGGGCCGAGGGGGC CGAGGGCCGAGGGCTCAGCACGGGGGCCGGGCCGAGGGGGC Direct Gain 0 0.944359390643644 0 0.909460783004761 prediction 0.888718781287288 Functional Gain - VPS37D ENSG00000176428 CDS Human protein_coding chr7:73085662 chr7:73085662 nonsynonymous SNV 0.988 1 21 hm5C_associated_SNPs_131800 0 0 0 0 0 exosome 0 0.500231643921159 0.818921566009522 0.000463287842317861 hm5C_site_51858 DeepMRMD:0.818921566009522;iRNA_m5C:0.000463287842317861 51859 chr11 63273900 63273900 1 + G C KIRP 63273900 + 63273880 63273920 41 GGGGGCAGGGCTCCTGGAACGAGGATCTACAGTTGGAGTTG GGGGGCAGGGCTCCTGGAACCAGGATCTACAGTTGGAGTTG Direct Gain 0 0.94435658150695 0 0.947580814361572 prediction 0.8887131630139 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63273900 chr11:63273900 synonymous SNV . 0 21 hm5C_associated_SNPs_131801 0 0 0 0 1 exosome 0 0.500231661770452 0.895161628723144 0.000463323540904392 hm5C_site_51859 DeepMRMD:0.895161628723144;iRNA_m5C:0.000463323540904392 51860 chr11 32615458 32615458 1 + G C HNSC 32615458 + 32615438 32615478 41 AATTGCTCGGAAGTTACACAGAGGACAATGCTTCCCAGGCT AATTGCTCGGAAGTTACACACAGGACAATGCTTCCCAGGCT Direct Gain 0 0.944342764272631 0 0.952548623085022 prediction 0.888685528545261 Functional Gain - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32615458 chr11:32615458 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131802 0 0 1 0 2 Cytosol 0 0.500231643921109 0.905097246170044 0.000463287842218385 hm5C_site_51860 DeepMRMD:0.905097246170044;iRNA_m5C:0.000463287842218385 51861 chr11 1093206 1093206 1 + A G KIRC 1093206 - 1093186 1093226 41 GTGGTGGTGGTGATGGCTGTTGGGGTTGGGGACTGTGTGCC GTGGTGGTGGTGATGGCTGTCGGGGTTGGGGACTGTGTGCC Direct Gain 0 0.944327952817837 0 0.994978070259094 prediction 0.888655905635673 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1093206 chr11:1093206 synonymous SNV . 0 21 hm5C_associated_SNPs_131803 0 0 0 0 0 Endoplasmic reticulum 0 0.500231631426442 0.989956140518188 0.000463262852884672 hm5C_site_51861 DeepMRMD:0.989956140518188;iRNA_m5C:0.000463262852884672 51862 chr9 94921517 94921517 1 + G C rs7866918 94921517 + 94921497 94921537 41 TTTGGAACATGAATACTCCTGAGGGTTCACAAACGAGCCTG TTTGGAACATGAATACTCCTCAGGGTTCACAAACGAGCCTG Direct Gain 0 0.944310237096526 0 0.849237561225891 prediction 0.888620474193053 Functional Gain - LINC00475 ENSG00000225511 ncRNA_exonic Human lincRNA chr9:94921517 chr9:94921517 . . 0 21 hm5C_associated_SNPs_131804 0 0 0 0 0 unknown 0 0.500231646204123 0.698475122451782 0.000463292408246163 hm5C_site_51862 DeepMRMD:0.698475122451782;iRNA_m5C:0.000463292408246163 51863 chr20 62372772 62372772 1 + C G LUAD 62372772 - 62372752 62372792 41 GCTGGTGGACAGGCTTGTAAGGGCAGCGGCAGCCATGACCT GCTGGTGGACAGGCTTGTAACGGCAGCGGCAGCCATGACCT Direct Gain 0 0.944285728305753 0 0.915730953216553 prediction 0.888571456611505 Functional Gain - SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62372772 chr20:62372772 nonsynonymous SNV 0.238 2 21 hm5C_associated_SNPs_131805 0 0 0 0 0 Cytosol 0 0.500231644811536 0.831461906433106 0.000463289623072738 hm5C_site_51863 DeepMRMD:0.831461906433106;iRNA_m5C:0.000463289623072738 51864 chr21 42540289 42540289 1 + C G rs552342712 42540289 - 42540269 42540309 41 TTCGTGGCCGCGGCCACCCGGAGGGGCAGCGTGAAGGGCGC TTCGTGGCCGCGGCCACCCGCAGGGGCAGCGTGAAGGGCGC Direct Gain 0 0.944278986233867 0 0.918793320655823 prediction 0.888557972467734 Functional Gain - BACE2 ENSG00000182240 CDS Human protein_coding chr21:42540289 chr21:42540289 synonymous SNV . 0 21 hm5C_associated_SNPs_131806 0 0 0 0 0 Ribosome 0 0.500231643918902 0.837586641311646 0.00046328783780436 hm5C_site_51864 DeepMRMD:0.837586641311646;iRNA_m5C:0.00046328783780436 51865 chr1 206760474 206760474 1 + T C rs7541244 206760474 + 206760454 206760494 41 TCCATGGACAAGTGTTTGCATGGGGGTTCAGCTGTGCCCGC TCCATGGACAAGTGTTTGCACGGGGGTTCAGCTGTGCCCGC Direct Gain 0 0.944273341314666 0 0.939956724643707 prediction 0.888546682629332 Functional Gain - RASSF5 ENSG00000136653 UTR3 Human other chr1:206760474 chr1:206760474 . . 0 21 hm5C_associated_SNPs_131807 0 0 1 0 0 chromatin 0 0.500231643971351 0.879913449287414 0.000463287942702673 hm5C_site_51865 DeepMRMD:0.879913449287414;iRNA_m5C:0.000463287942702673 51866 chr20 5173008 5173008 1 + G C rs6133193 5173008 + 5172988 5173028 41 GTGGGGGTGGGGTGGGGAAGGGGGGTCTAGGAAGCCGAAGC GTGGGGGTGGGGTGGGGAAGCGGGGTCTAGGAAGCCGAAGC Direct Gain 0 0.94425099342689 0 0.987398147583008 prediction 0.888501986853779 Functional Gain - CDS2 ENSG00000101290 UTR3 Human protein_coding chr20:5173008 chr20:5173008 . . 0 21 hm5C_associated_SNPs_131808 0 0 1 0 0 chromatin 0 0.500231643921092 0.974796295166016 0.000463287842184856 hm5C_site_51866 DeepMRMD:0.974796295166016;iRNA_m5C:0.000463287842184856 51867 chr22 30166171 30166171 1 + T C rs535671886 30166171 + 30166151 30166191 41 ATACCTCACTGTCTTGGCCATGGGGAAGCACTATGGCCTCA ATACCTCACTGTCTTGGCCACGGGGAAGCACTATGGCCTCA Direct Gain 0 0.944247991820781 0 0.917699873447418 prediction 0.888495983641561 Functional Gain - UQCR10 ENSG00000184076 UTR3 Human protein_coding chr22:30166171 chr22:30166171 . . 0 21 hm5C_associated_SNPs_131809 0 0 1 0 0 Cytosol 0 0.500231685369732 0.835399746894836 0.000463370739463675 hm5C_site_51867 DeepMRMD:0.835399746894836;iRNA_m5C:0.000463370739463675 51868 chr3 63898589 63898589 1 + T C STAD 63898589 + 63898569 63898609 41 GTTGAGGCTTCCAAACTTCCTGGGAAGGACGGTGAGTGTCC GTTGAGGCTTCCAAACTTCCCGGGAAGGACGGTGAGTGTCC Direct Gain 0 0.944230910667164 0 0.904849171638489 prediction 0.888461821334329 Functional Gain - ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63898589 chr3:63898589 synonymous SNV . 0 21 hm5C_associated_SNPs_131810 0 0 1 0 0 Cytosol 0 0.500231643913537 0.809698343276978 0.000463287827074499 hm5C_site_51868 DeepMRMD:0.809698343276978;iRNA_m5C:0.000463287827074499 51869 chr12 70637920 70637920 1 + A C rs148962905 70637920 + 70637900 70637940 41 CCGAAGGCTGTGCATGGTGGAGGGAGAAGGAATGCAACTGC CCGAAGGCTGTGCATGGTGGCGGGAGAAGGAATGCAACTGC Direct Gain 0 0.944217417231046 0 0.705579459667206 prediction 0.888434834462093 Functional Gain - CNOT2 ENSG00000111596 UTR5 Human protein_coding chr12:70637920 chr12:70637920 . . 0 21 hm5C_associated_SNPs_131811 0 0 1 0 0 Nucleus 0 0.500231643921084 0.411158919334412 0.000463287842168647 hm5C_site_51869 DeepMRMD:0.411158919334412;iRNA_m5C:0.000463287842168647 51870 chr10 70332883 70332883 1 + A G LUAD 70332883 - 70332863 70332903 41 ACTGAATGCTGGGGTTTCCTTGAGAGGTAACTTTGGGGGTT ACTGAATGCTGGGGTTTCCTCGAGAGGTAACTTTGGGGGTT Direct Gain 0 0.944205657797895 0 0.933481335639954 prediction 0.88841131559579 Functional Gain - TET1 ENSG00000138336 CDS Human protein_coding chr10:70332883 chr10:70332883 nonsynonymous SNV 0.976 1 21 hm5C_associated_SNPs_131812 0 0 0 0 0 chromatin 0 0.500231643921092 0.866962671279908 0.000463287842184856 hm5C_site_51870 DeepMRMD:0.866962671279908;iRNA_m5C:0.000463287842184856 51871 chr17 78320894 78320894 1 + C G BLCA 78320894 - 78320874 78320914 41 GGTCCTGGACGAGGATGTCTGAGGAGCAGATGCCCTTGGCG GGTCCTGGACGAGGATGTCTCAGGAGCAGATGCCCTTGGCG Direct Gain 0 0.944202449792653 0 0.97494900226593 prediction 0.888404899585306 Functional Gain - RNF213 ENSG00000173821 CDS Human protein_coding chr17:78320894 chr17:78320894 stopgain 0.315 1 21 hm5C_associated_SNPs_131813 0 0 0 0 0 Nucleus 0 0.500231643921182 0.94989800453186 0.000463287842363824 hm5C_site_51871 DeepMRMD:0.94989800453186;iRNA_m5C:0.000463287842363824 51872 chr11 119005130 119005130 1 + A G STAD 119005130 - 119005110 119005150 41 CCTGAAGGTGGCTCAGGGGCTGGGGGAGGCTCCCCTGGGGC CCTGAAGGTGGCTCAGGGGCCGGGGGAGGCTCCCCTGGGGC Direct Gain 0 0.944196810649763 0 0.933065295219421 prediction 0.888393621299526 Functional Gain - HINFP ENSG00000172273 CDS Human protein_coding chr11:119005130 chr11:119005130 synonymous SNV . 0 21 hm5C_associated_SNPs_131814 0 0 0 0 0 Cytosol 0 0.500231643921092 0.866130590438842 0.000463287842184856 hm5C_site_51872 DeepMRMD:0.866130590438842;iRNA_m5C:0.000463287842184856 51873 chr12 21327544 21327544 1 + T C COAD 21327544 + 21327524 21327564 41 GATTGTATTTGTGAGTTACTTTGGATCCAAACTACATAGAC GATTGTATTTGTGAGTTACTCTGGATCCAAACTACATAGAC Direct Gain 0 0.944194372842807 0 0.876474797725677 prediction 0.888388745685614 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21327544 chr12:21327544 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131815 0 0 0 0 2 exosome 0 0.500244017466519 0.752949595451354 0.00048803493303895 hm5C_site_51873 DeepMRMD:0.752949595451354;iRNA_m5C:0.00048803493303895 51874 chr7 57509917 57509917 1 + T G LIHC 57509917 - 57509897 57509937 41 GGACGCAGAGCAGTGAAGAGAAGGACTGGAGCTCTGGGCGC GGACGCAGAGCAGTGAAGAGCAGGACTGGAGCTCTGGGCGC Direct Gain 0 0.944193484051419 0 0.849056839942932 prediction 0.888386968102838 Functional Gain - ZNF716 ENSG00000182111 UTR5 Human protein_coding chr7:57509917 chr7:57509917 . . 0 21 hm5C_associated_SNPs_131816 0 0 0 0 0 unknown 0 0.500231643921091 0.698113679885864 0.000463287842181526 hm5C_site_51874 DeepMRMD:0.698113679885864;iRNA_m5C:0.000463287842181526 51875 chr3 10276170 10276170 1 + A G rs199614498 10276170 - 10276150 10276190 41 GCAGAGCGAGGCGGTGCTGCTTGGAATATCACTGAGGAGTA GCAGAGCGAGGCGGTGCTGCCTGGAATATCACTGAGGAGTA Direct Gain 0 0.944176725199245 0 0.54494446516037 prediction 0.88835345039849 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10276170 chr3:10276170 nonsynonymous SNV 0.498 0 21 hm5C_associated_SNPs_131817 0 0 0 0 0 Nucleus 0 0.500231642833815 0.08988893032074 0.000463285667629432 hm5C_site_51875 DeepMRMD:0.08988893032074;iRNA_m5C:0.000463285667629432 51876 chr8 86386583 86386583 1 + G C LGG 86386583 + 86386563 86386603 41 TTCACTGGAACACCAAATATGGGGATTTTGGGAAAGCTGTG TTCACTGGAACACCAAATATCGGGATTTTGGGAAAGCTGTG Direct Gain 0 0.944165047365076 0 0.860895276069641 prediction 0.888330094730152 Functional Gain - CA2 ENSG00000104267 CDS Human protein_coding chr8:86386583 chr8:86386583 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_131818 0 0 1 0 2 Ribosome 0 0.500231643921092 0.721790552139282 0.000463287842184856 hm5C_site_51876 DeepMRMD:0.721790552139282;iRNA_m5C:0.000463287842184856 51877 chr17 66097705 66097705 1 + C G rs142043812 66097705 - 66097685 66097725 41 GCGGCCATTTGTCGGCTCCGGGGGGGCGAGGGGGAGATGGG GCGGCCATTTGTCGGCTCCGCGGGGGCGAGGGGGAGATGGG Direct Gain 0 0.944162189236985 0 0.798146724700928 prediction 0.888324378473971 Functional Gain - LINC00674 ENSG00000237854;ENSG00000265055 upstream Human other chr17:66097705 chr17:66097705 . . 0 21 hm5C_associated_SNPs_131819 0 0 0 0 0 unknown 0 0.500231854399512 0.596293449401856 0.000463708799024021 hm5C_site_51877 DeepMRMD:0.596293449401856;iRNA_m5C:0.000463708799024021 51878 chr1 227083161 227083161 1 + A C LUAD 227083161 + 227083141 227083181 41 TCCTGCTGCTTGCTGTGTTCAAGAAGGCGCTGCCCGCCCTC TCCTGCTGCTTGCTGTGTTCCAGAAGGCGCTGCCCGCCCTC Direct Gain 0 0.944147928922157 0 0.935306668281555 prediction 0.888295857844314 Functional Gain - PSEN2 ENSG00000143801 CDS Human protein_coding chr1:227083161 chr1:227083161 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131820 0 0 1 0 1 Endoplasmic reticulum 0 0.500231642902613 0.87061333656311 0.000463285805226032 hm5C_site_51878 DeepMRMD:0.87061333656311;iRNA_m5C:0.000463285805226032 51879 chrX 24089738 24089738 1 + G C LUSC 24089738 + 24089718 24089758 41 AATGGTGGGGCAAGTACTTGGTGCAGTCGGAGCTTTACCTG AATGGTGGGGCAAGTACTTGCTGCAGTCGGAGCTTTACCTG Direct Gain 0 0.944145855827213 0 0.868443965911865 prediction 0.888291711654426 Functional Gain - EIF2S3 ENSG00000130741 CDS Human protein_coding chrX:24089738 chrX:24089738 nonsynonymous SNV 0.995 2 21 hm5C_associated_SNPs_131821 0 0 1 0 1 Cytosol 0 0.500231643921094 0.73688793182373 0.000463287842187521 hm5C_site_51879 DeepMRMD:0.73688793182373;iRNA_m5C:0.000463287842187521 51880 chr17 4624378 4624378 1 + G C rs35270783 4624378 + 4624358 4624398 41 GGGATGGGGTTGGGAGAGGTGAGGGCAGGATTAAGATCCCC GGGATGGGGTTGGGAGAGGTCAGGGCAGGATTAAGATCCCC Direct Gain 0 0.944133091930336 0 0.798259973526001 prediction 0.888266183860672 Functional Gain - ARRB2 ENSG00000141480 UTR3 Human protein_coding chr17:4624378 chr17:4624378 . . 0 21 hm5C_associated_SNPs_131822 0 0 1 1 0 Cytosol 0 0.500231643921131 0.596519947052002 0.000463287842261462 hm5C_site_51880 DeepMRMD:0.596519947052002;iRNA_m5C:0.000463287842261462 51881 chr18 13645246 13645246 1 + A G STAD 13645246 - 13645226 13645266 41 ACCGTCGGACAGGGAGATGGTGGGAGGAAGATCAATCTCGT ACCGTCGGACAGGGAGATGGCGGGAGGAAGATCAATCTCGT Direct Gain 0 0.944131724190385 0 0.925660133361816 prediction 0.888263448380771 Functional Gain - LDLRAD4 ENSG00000168675 CDS Human protein_coding chr18:13645246 chr18:13645246 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131823 0 0 0 0 0 Nucleus 0 0.500231643921096 0.851320266723632 0.00046328784219285 hm5C_site_51881 DeepMRMD:0.851320266723632;iRNA_m5C:0.00046328784219285 51882 chr11 124847425 124847425 1 + G C KIRP 124847425 + 124847405 124847445 41 GGATAAATACAGGAATAAGAGGAGAGTTGCCCATTAAGGTC GGATAAATACAGGAATAAGACGAGAGTTGCCCATTAAGGTC Direct Gain 0 0.944126168209969 0 0.597593486309052 prediction 0.888252336419938 Functional Gain - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124847425 chr11:124847425 nonsynonymous SNV 0.005 1 21 hm5C_associated_SNPs_131824 0 0 0 0 2 chromatin 0 0.500231652543175 0.195186972618104 0.000463305086350729 hm5C_site_51882 DeepMRMD:0.195186972618104;iRNA_m5C:0.000463305086350729 51883 chr11 1093176 1093176 1 + A G UCEC 1093176 - 1093156 1093196 41 GACTGTGTGCCGGTGGGTGTTGGGGTTGGTGTCACCGTAGT GACTGTGTGCCGGTGGGTGTCGGGGTTGGTGTCACCGTAGT Direct Gain 0 0.944106592264588 0 0.9699826836586 prediction 0.888213184529175 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1093176 chr11:1093176 synonymous SNV . 0 21 hm5C_associated_SNPs_131825 0 0 0 0 0 Endoplasmic reticulum 0 0.500231644522107 0.9399653673172 0.000463289044214221 hm5C_site_51883 DeepMRMD:0.9399653673172;iRNA_m5C:0.000463289044214221 51884 chr5 128797156 128797156 1 + C G rs182638734 128797156 - 128797136 128797176 41 GGGGACGGGGGCGGCTGCGGGGGAGGCGGCGGCTGCCACGA GGGGACGGGGGCGGCTGCGGCGGAGGCGGCGGCTGCCACGA Direct Gain 0 0.944092657798944 0 0.946539282798767 prediction 0.888185315597887 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128797156 chr5:128797156 synonymous SNV . 0 21 hm5C_associated_SNPs_131826 0 0 0 0 0 exosome 0 0.500231643921093 0.893078565597534 0.0004632878421853 hm5C_site_51884 DeepMRMD:0.893078565597534;iRNA_m5C:0.0004632878421853 51885 chr2 105858985 105858985 1 + A G LGG 105858985 - 105858965 105859005 41 GTGCACGCGCACGGCGTTCTTGCGGACCGTGTTGAGGATGC GTGCACGCGCACGGCGTTCTCGCGGACCGTGTTGAGGATGC Direct Gain 0 0.944091009693979 0 0.85912424325943 prediction 0.888182019387958 Functional Gain - GPR45 ENSG00000135973 CDS Human protein_coding chr2:105858985 chr2:105858985 nonsynonymous SNV 0.990 2 21 hm5C_associated_SNPs_131827 0 0 0 0 0 unknown 0 0.500231643921108 0.71824848651886 0.000463287842215943 hm5C_site_51885 DeepMRMD:0.71824848651886;iRNA_m5C:0.000463287842215943 51886 chr7 70228261 70228261 1 + C G BLCA 70228261 - 70228241 70228281 41 GCTGGGAGAGGCTCTGAGCAGAGGGGTGGGCCTGCACAGGT GCTGGGAGAGGCTCTGAGCACAGGGGTGGGCCTGCACAGGT Direct Gain 0 0.944058680400187 0 0.863408744335175 prediction 0.888117360800375 Functional Gain - AUTS2 ENSG00000158321 CDS Human protein_coding chr7:70228261 chr7:70228261 nonsynonymous SNV 0.347 1 21 hm5C_associated_SNPs_131828 0 0 0 0 0 Nucleus 0 0.500224301093814 0.72681748867035 0.000448602187628877 hm5C_site_51886 DeepMRMD:0.72681748867035;iRNA_m5C:0.000448602187628877 51887 chr12 111319093 111319093 1 + G C LUAD 111319093 + 111319073 111319113 41 TTCGAGGAGCAGGCCAAAAGGGAGGAAGGTACACCCTCCAG TTCGAGGAGCAGGCCAAAAGCGAGGAAGGTACACCCTCCAG Direct Gain 0 0.944048107760503 0 0.86844539642334 prediction 0.888096215521007 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111319093 chr12:111319093 nonsynonymous SNV 0.605 0 21 hm5C_associated_SNPs_131829 0 0 0 2 0 exosome 0 0.500231643921137 0.73689079284668 0.000463287842273896 hm5C_site_51887 DeepMRMD:0.73689079284668;iRNA_m5C:0.000463287842273896 51888 chr20 42088732 42088732 1 + T C BLCA 42088732 + 42088712 42088752 41 GCCCACAAGGAACGAACAAATGAGGGTGTAATTGAGTTTCG GCCCACAAGGAACGAACAAACGAGGGTGTAATTGAGTTTCG Direct Gain 0 0.944045040416597 0 0.807208955287933 prediction 0.888090080833195 Functional Gain - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42088732 chr20:42088732 synonymous SNV . 0 21 hm5C_associated_SNPs_131830 0 0 1 0 1 Nucleus 0 0.50023163779225 0.614417910575866 0.000463275584499545 hm5C_site_51888 DeepMRMD:0.614417910575866;iRNA_m5C:0.000463275584499545 51889 chr15 75047231 75047231 1 + T C LIHC 75047231 + 75047211 75047251 41 AGTGAGAAGATGATGCTGTTTGGCATGGGCAAGCGCCGGTG AGTGAGAAGATGATGCTGTTCGGCATGGGCAAGCGCCGGTG Direct Gain 0 0.944043023828369 0 0.890005946159363 prediction 0.888086047656739 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75047231 chr15:75047231 synonymous SNV . 0 21 hm5C_associated_SNPs_131831 0 0 0 0 1 Nucleus 0 0.500231827695563 0.780011892318726 0.000463655391125695 hm5C_site_51889 DeepMRMD:0.780011892318726;iRNA_m5C:0.000463655391125695 51890 chr6 2766144 2766144 1 + T C rs17851692 2766144 + 2766124 2766164 41 GAGAGCAGCGAGGGCGAGGGTGAGGAGGGCGACGACGGCGG GAGAGCAGCGAGGGCGAGGGCGAGGAGGGCGACGACGGCGG Direct Gain 0 0.944030784088763 0 0.878452777862549 prediction 0.888061568177526 Functional Gain - WRNIP1 ENSG00000124535 CDS Human protein_coding chr6:2766144 chr6:2766144 synonymous SNV . 0 21 hm5C_associated_SNPs_131832 0 0 1 0 0 Ribosome 0 0.500231643850127 0.756905555725098 0.000463287700253057 hm5C_site_51890 DeepMRMD:0.756905555725098;iRNA_m5C:0.000463287700253057 51891 chr20 3842980 3842980 1 + C G CESC 3842980 - 3842960 3843000 41 GGCTGAGGGCTGCCAGGTCAGAGGAGGACTCCAGGGGGCCA GGCTGAGGGCTGCCAGGTCACAGGAGGACTCCAGGGGGCCA Direct Gain 0 0.944015867866699 0 0.944692134857178 prediction 0.888031735733397 Functional Gain - MAVS ENSG00000088888 CDS Human protein_coding chr20:3842980 chr20:3842980 nonsynonymous SNV 0.041 2 21 hm5C_associated_SNPs_131833 0 0 0 0 0 Nucleus 0 0.500231643921092 0.889384269714356 0.000463287842184856 hm5C_site_51891 DeepMRMD:0.889384269714356;iRNA_m5C:0.000463287842184856 51892 chr12 122260428 122260428 1 + A G rs146687724 122260428 - 122260408 122260448 41 CAGCGGCAAGGGGAGCATCATAGGGGGCTCCGGCTCCACTT CAGCGGCAAGGGGAGCATCACAGGGGGCTCCGGCTCCACTT Direct Gain 0 0.94400232818475 0 0.933967232704163 prediction 0.888004656369501 Functional Gain - SETD1B ENSG00000139718 CDS Human protein_coding chr12:122260428 chr12:122260428 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131834 0 0 0 0 0 chromatin 0 0.500231643921092 0.867934465408326 0.000463287842184856 hm5C_site_51892 DeepMRMD:0.867934465408326;iRNA_m5C:0.000463287842184856 51893 chr8 9413539 9413539 1 + A G STAD 9413539 - 9413519 9413559 41 GGGCTGAGTGGGGGAGGAGGTGGCGGCGGCGGCGCTGAAGC GGGCTGAGTGGGGGAGGAGGCGGCGGCGGCGGCGCTGAAGC Direct Gain 0 0.943994991447746 0 0.960062801837921 prediction 0.887989982895492 Functional Gain - TNKS ENSG00000173273 CDS Human protein_coding chr8:9413539 chr8:9413539 synonymous SNV . 0 21 hm5C_associated_SNPs_131835 0 0 0 0 0 Nucleus 0 0.500231643921066 0.920125603675842 0.000463287842132898 hm5C_site_51893 DeepMRMD:0.920125603675842;iRNA_m5C:0.000463287842132898 51894 chr12 57921371 57921371 1 + C G BLCA 57921371 - 57921351 57921391 41 GTTGGAGGGGGCCTTGCCCAGAGAGGAGGCCCCCGGGTCAG GTTGGAGGGGGCCTTGCCCACAGAGGAGGCCCCCGGGTCAG Direct Gain 0 0.943949579113453 0 0.887812852859497 prediction 0.887899158226906 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921371 chr12:57921371 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131836 0 0 0 0 0 chromatin 0 0.500229331645943 0.775625705718994 0.000458663291886152 hm5C_site_51894 DeepMRMD:0.775625705718994;iRNA_m5C:0.000458663291886152 51895 chr5 104435355 104435355 1 + T C UCEC 104435355 + 104435335 104435375 41 ATTTTGGTACCAAGTAGAATTGGGACACAGCAGGTCAGGAG ATTTTGGTACCAAGTAGAATCGGGACACAGCAGGTCAGGAG Direct Gain 0 0.943933308149017 0 0.811663866043091 prediction 0.887866616298034 Functional Gain - RAB9BP1 ENSG00000232159 ncRNA_exonic Human processed_pseudogene chr5:104435355 chr5:104435355 . . 0 21 hm5C_associated_SNPs_131837 0 0 0 1 0 unknown 0 0.500231626864985 0.623327732086182 0.000463253729970692 hm5C_site_51895 DeepMRMD:0.623327732086182;iRNA_m5C:0.000463253729970692 51896 chr19 2273072 2273072 1 + T C LGG 2273072 + 2273052 2273092 41 CTTGCTTCATGGCCTACACGTTCGAGAGAGAGTCTTCGGGA CTTGCTTCATGGCCTACACGCTCGAGAGAGAGTCTTCGGGA Direct Gain 0 0.943907365076646 0 0.867786169052124 prediction 0.887814730153292 Functional Gain - OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2273072 chr19:2273072 nonsynonymous SNV 0.495 0 21 hm5C_associated_SNPs_131838 0 0 1 0 0 Ribosome 0 0.500231643921093 0.735572338104248 0.000463287842185522 hm5C_site_51896 DeepMRMD:0.735572338104248;iRNA_m5C:0.000463287842185522 51897 chr5 180661464 180661464 1 + T G STAD 180661464 - 180661444 180661484 41 GCGGCGATGGTGATGGCGCGAGGAGCTGGCATCCCCGCTGC GCGGCGATGGTGATGGCGCGCGGAGCTGGCATCCCCGCTGC Direct Gain 0 0.943898265382622 0 0.887245833873749 prediction 0.887796530765245 Functional Gain - TRIM41 ENSG00000146063 CDS Human protein_coding chr5:180661464 chr5:180661464 nonsynonymous SNV 0.990 3 21 hm5C_associated_SNPs_131839 0 0 0 0 0 chromatin 0 0.50023164392108 0.774491667747498 0.000463287842159987 hm5C_site_51897 DeepMRMD:0.774491667747498;iRNA_m5C:0.000463287842159987 51898 chr2 3606535 3606535 1 + G C rs116404628 3606535 + 3606515 3606555 41 TGCACGTGGGTGTTTAACCAGGGGATATCCAGTGCCTCAAG TGCACGTGGGTGTTTAACCACGGGATATCCAGTGCCTCAAG Direct Gain 0 0.943876019807906 0 0.91813600063324 prediction 0.887752039615813 Functional Gain - RNASEH1-AS1 ENSG00000234171 ncRNA_exonic Human antisense chr2:3606535 chr2:3606535 . . 0 21 hm5C_associated_SNPs_131840 0 0 0 0 1 unknown 0 0.50023085166182 0.83627200126648 0.000461703323639595 hm5C_site_51898 DeepMRMD:0.83627200126648;iRNA_m5C:0.000461703323639595 51899 chr16 31202390 31202390 1 + T C COAD 31202390 + 31202370 31202410 41 TTCCGAGGGGGCCGGGGTGGTGGGGACAGAGGTGGCTTTGG TTCCGAGGGGGCCGGGGTGGCGGGGACAGAGGTGGCTTTGG Direct Gain 0 0.943833751566135 0 0.959004640579224 prediction 0.887667503132269 Functional Gain - FUS ENSG00000089280 CDS Human protein_coding chr16:31202390 chr16:31202390 synonymous SNV . 0 21 hm5C_associated_SNPs_131841 0 0 1 0 1 Cytosol 0 0.500231656839376 0.918009281158448 0.000463313678751076 hm5C_site_51899 DeepMRMD:0.918009281158448;iRNA_m5C:0.000463313678751076 51900 chr16 632949 632949 1 + A G LUAD 632949 - 632929 632969 41 CAGGGCGCCCCAGGAGTGCTTGGGGTGGCAGCCACAGCTGG CAGGGCGCCCCAGGAGTGCTCGGGGTGGCAGCCACAGCTGG Direct Gain 0 0.943828454186358 0 0.977441072463989 prediction 0.887656908372715 Functional Gain - PIGQ ENSG00000007541 CDS Human protein_coding chr16:632949 chr16:632949 nonsynonymous SNV 0.970 2 21 hm5C_associated_SNPs_131842 0 0 0 0 0 Ribosome 0 0.500231643921092 0.954882144927978 0.00046328784218419 hm5C_site_51900 DeepMRMD:0.954882144927978;iRNA_m5C:0.00046328784218419 51901 chr1 206652436 206652436 1 + C G BLCA 206652436 - 206652416 206652456 41 TTAGGGATGGCTGTGCTGAAGAGGGTCAGGGGGCTGCTTGC TTAGGGATGGCTGTGCTGAACAGGGTCAGGGGGCTGCTTGC Direct Gain 0 0.943814820631495 0 0.818751215934753 prediction 0.88762964126299 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206652436 chr1:206652436 synonymous SNV . 0 21 hm5C_associated_SNPs_131843 0 0 0 0 0 Cytosol 0 0.500231643925323 0.637502431869506 0.000463287850646532 hm5C_site_51901 DeepMRMD:0.637502431869506;iRNA_m5C:0.000463287850646532 51902 chr22 50879329 50879329 1 + C G CESC 50879329 - 50879309 50879349 41 CCTCGCTGTGGGAGCCCCCAGAGGAGCTACTGTCAGAGGCC CCTCGCTGTGGGAGCCCCCACAGGAGCTACTGTCAGAGGCC Direct Gain 0 0.943806131709701 0 0.938136696815491 prediction 0.887612263419401 Functional Gain - PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50879329 chr22:50879329 nonsynonymous SNV 0.786 2 21 hm5C_associated_SNPs_131844 0 0 0 0 0 Ribosome 0 0.500231643921092 0.876273393630982 0.000463287842184856 hm5C_site_51902 DeepMRMD:0.876273393630982;iRNA_m5C:0.000463287842184856 51903 chr9 136287582 136287582 1 + C G rs34024143 136287582 - 136287562 136287602 41 GAGGGGAGGGCATCTTGCCCGGGGGTGACGCTGGTGCATCC GAGGGGAGGGCATCTTGCCCCGGGGTGACGCTGGTGCATCC Direct Gain 0 0.94378875872593 0 0.972335338592529 prediction 0.887577517451861 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136287582 chr9:136287582 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131845 0 0 0 0 0 nucleus 0 0.500231643921092 0.944670677185058 0.000463287842184856 hm5C_site_51903 DeepMRMD:0.944670677185058;iRNA_m5C:0.000463287842184856 51904 chr1 240371247 240371247 1 + C G rs529599332 240371247 - 240371227 240371267 41 ATGCCCGCTCCGGGAAGTGGGGGCGGAGGGGGTATGCCCGC ATGCCCGCTCCGGGAAGTGGCGGCGGAGGGGGTATGCCCGC Direct Gain 0 0.943787110221376 0 0.85769510269165 prediction 0.887574220442752 Functional Gain - FMN2 ENSG00000155816 CDS Human protein_coding chr1:240371247 chr1:240371247 synonymous SNV . 0 21 hm5C_associated_SNPs_131846 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921207 0.7153902053833 0.000463287842413118 hm5C_site_51904 DeepMRMD:0.7153902053833;iRNA_m5C:0.000463287842413118 51905 chr18 12254539 12254539 1 + C G rs60132277 12254539 - 12254519 12254559 41 CGCGGAGCGCAAGAGAATGCGGGGAGCAGGGGGCTGAAGGG CGCGGAGCGCAAGAGAATGCCGGGAGCAGGGGGCTGAAGGG Direct Gain 0 0.943754376293583 0 0.866278409957886 prediction 0.887508752587166 Functional Gain - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12254539 chr18:12254539 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131847 0 0 0 0 0 unknown 0 0.500231107853127 0.732556819915772 0.000462215706253266 hm5C_site_51905 DeepMRMD:0.732556819915772;iRNA_m5C:0.000462215706253266 51906 chr11 5717615 5717615 1 + A C LUAD 5717615 + 5717595 5717635 41 GAGTCAGTGATCATCTCAAGAGGGGAAAGCAGCTGTCCTGT GAGTCAGTGATCATCTCAAGCGGGGAAAGCAGCTGTCCTGT Direct Gain 0 0.943745627648948 0 0.923764586448669 prediction 0.887491255297897 Functional Gain - TRIM22 ENSG00000132274 CDS Human protein_coding chr11:5717615 chr11:5717615 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_131848 0 0 0 0 0 Cytosol 0 0.500573564637636 0.847529172897338 0.00114712927527161 hm5C_site_51906 DeepMRMD:0.847529172897338;iRNA_m5C:0.00114712927527161 51907 chr3 8607335 8607335 1 + T C SKCM 8607335 + 8607315 8607355 41 GTGCTCCGGCTGCGATGAGGTGGGAGATAGCCGCGAGATGG GTGCTCCGGCTGCGATGAGGCGGGAGATAGCCGCGAGATGG Direct Gain 0 0.943740237632576 0 0.925795376300812 prediction 0.887480475265152 Functional Gain - LMCD1 ENSG00000071282 splicing Human protein_coding chr3:8607335 chr3:8607335 . 0.808 0 21 hm5C_associated_SNPs_131849 0 0 1 0 0 exosome 0 0.500231643981652 0.851590752601624 0.000463287963303527 hm5C_site_51907 DeepMRMD:0.851590752601624;iRNA_m5C:0.000463287963303527 51908 chr22 23437454 23437454 1 + T C rs146934131 23437454 + 23437434 23437474 41 GTGAAGGGCTGGATGCACAGTGGGAGCCGGAGGCGGGGGGC GTGAAGGGCTGGATGCACAGCGGGAGCCGGAGGCGGGGGGC Direct Gain 0 0.943710801498913 0 0.936924815177917 prediction 0.887421602997826 Functional Gain - GNAZ ENSG00000128266 UTR5 Human protein_coding chr22:23437454 chr22:23437454 . . 0 21 hm5C_associated_SNPs_131850 0 0 1 0 1 Ribosome 0 0.500231644981038 0.873849630355834 0.000463289962076896 hm5C_site_51908 DeepMRMD:0.873849630355834;iRNA_m5C:0.000463289962076896 51909 chr9 110087185 110087185 1 + G C CESC 110087185 + 110087165 110087205 41 TCAAGAAGCTGGTGGTCAAGGAGGAGGAGGTGGAGGTGGCA TCAAGAAGCTGGTGGTCAAGCAGGAGGAGGTGGAGGTGGCA Direct Gain 0 0.943705541419269 0 0.841133236885071 prediction 0.887411082838539 Functional Gain - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110087185 chr9:110087185 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131851 0 0 1 0 1 Ribosome 0 0.500231643925686 0.682266473770142 0.000463287851372174 hm5C_site_51909 DeepMRMD:0.682266473770142;iRNA_m5C:0.000463287851372174 51910 chr12 75889386 75889386 1 + G C BLCA 75889386 + 75889366 75889406 41 CCCAACTTGGCCATATAAGAGAGGAGCCACCTGCAGTGCCT CCCAACTTGGCCATATAAGACAGGAGCCACCTGCAGTGCCT Direct Gain 0 0.94370347218604 0 0.542474508285522 prediction 0.88740694437208 Functional Gain - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75889386 chr12:75889386 nonsynonymous SNV 0.594 0 21 hm5C_associated_SNPs_131852 0 0 0 0 2 Endoplasmic reticulum 0 0.500231643955913 0.084949016571044 0.000463287911825816 hm5C_site_51910 DeepMRMD:0.084949016571044;iRNA_m5C:0.000463287911825816 51911 chr4 187209769 187209769 1 + A C rs143899287 187209769 + 187209749 187209789 41 AGAAAACTCAAGCAGTGTGAATGGGTTCCCAGGGGCCATTG AGAAAACTCAAGCAGTGTGACTGGGTTCCCAGGGGCCATTG Direct Gain 0 0.94369136666188 0 0.390151381492615 prediction 0.887382733323761 Functional Gain - F11-AS1 ENSG00000251165 ncRNA_exonic Human antisense chr4:187209769 chr4:187209769 . . 0 21 hm5C_associated_SNPs_131853 0 0 1 0 0 unknown 0 0.500231643921092 0 0.000463287842184856 hm5C_site_51911 DeepMRMD:0;iRNA_m5C:0.000463287842184856 51912 chr7 100087224 100087224 1 + T C UCEC 100087224 + 100087204 100087244 41 GGAGGTGGGCGCCGCGACATTTGGGGCAGGCTGGGCCCTGC GGAGGTGGGCGCCGCGACATCTGGGGCAGGCTGGGCCCTGC Direct Gain 0 0.943688414689708 0 0.933655500411987 prediction 0.887376829379417 Functional Gain - NYAP1 ENSG00000166924 CDS Human protein_coding chr7:100087224 chr7:100087224 nonsynonymous SNV 0.976 4 21 hm5C_associated_SNPs_131854 0 0 0 0 1 nucleolus 0 0.500231643896676 0.867311000823974 0.000463287793352363 hm5C_site_51912 DeepMRMD:0.867311000823974;iRNA_m5C:0.000463287793352363 51913 chr19 49965961 49965961 1 + A G PAAD 49965961 - 49965941 49965981 41 AAGCGCTGGACCAGGTCACATGCGGCAGCCCCCCGGGCCCC AAGCGCTGGACCAGGTCACACGCGGCAGCCCCCCGGGCCCC Direct Gain 0 0.943678521328859 0 0.671195387840271 prediction 0.887357042657718 Functional Gain - ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49965961 chr19:49965961 synonymous SNV . 0 21 hm5C_associated_SNPs_131855 0 0 0 0 0 Ribosome 0 0.500231643921092 0.342390775680542 0.000463287842184856 hm5C_site_51913 DeepMRMD:0.342390775680542;iRNA_m5C:0.000463287842184856 51914 chr5 145890149 145890149 1 + C G PRAD 145890149 - 145890129 145890169 41 GGGAGGTGGGGGTGGACCCCGGCGATCCAGGTCATCAACAT GGGAGGTGGGGGTGGACCCCCGCGATCCAGGTCATCAACAT Direct Gain 0 0.943677787652154 0 0.732939422130585 prediction 0.887355575304308 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145890149 chr5:145890149 nonsynonymous SNV 0.994 3 21 hm5C_associated_SNPs_131856 0 0 0 0 0 Nucleus 0 0.500231602105645 0.46587884426117 0.000463204211290424 hm5C_site_51914 DeepMRMD:0.46587884426117;iRNA_m5C:0.000463204211290424 51915 chr19 41916783 41916783 1 + C G rs200242482 41916783 - 41916763 41916803 41 GTGGGGCAGTTGGGACCAGAGAGGAGACAGGCAAGGGGCCT GTGGGGCAGTTGGGACCAGACAGGAGACAGGCAAGGGGCCT Direct Gain 0 0.943668882502644 0 0.866305112838745 prediction 0.887337765005288 Functional Gain - BCKDHA ENSG00000248098;ENSG00000255730 intronic Human other chr19:41916783 chr19:41916783 . . 0 21 hm5C_associated_SNPs_131857 0 0 0 0 0 Cytosol 0 0.500231643178611 0.73261022567749 0.000463286357221593 hm5C_site_51915 DeepMRMD:0.73261022567749;iRNA_m5C:0.000463286357221593 51916 chr9 77257517 77257517 1 + T C rs149294914 77257517 + 77257497 77257537 41 AACGAGACCAGCGGCACTTATGCCAACGGGCACGTCATTGA AACGAGACCAGCGGCACTTACGCCAACGGGCACGTCATTGA Direct Gain 0 0.943658697078219 0 0.951685309410095 prediction 0.887317394156438 Functional Gain - RORB ENSG00000198963 CDS Human protein_coding chr9:77257517 chr9:77257517 synonymous SNV . 0 21 hm5C_associated_SNPs_131858 0 0 0 0 0 exosome 0 0.500231644215928 0.90337061882019 0.000463288431855169 hm5C_site_51916 DeepMRMD:0.90337061882019;iRNA_m5C:0.000463288431855169 51917 chr13 95364999 95364999 1 + T C rs551643199 95364999 + 95364979 95365019 41 CTCCGGGCAGGGTGCGCCGATGGGAAACCCCCAATCGGCTG CTCCGGGCAGGGTGCGCCGACGGGAAACCCCCAATCGGCTG Direct Gain 0 0.943648016448181 0 0.914886951446533 prediction 0.887296032896362 Functional Gain - SOX21-AS1 ENSG00000227640 ncRNA_exonic Human lincRNA chr13:95364999 chr13:95364999 . . 0 21 hm5C_associated_SNPs_131859 0 0 1 0 0 unknown 0 0.500231643921092 0.829773902893066 0.000463287842184856 hm5C_site_51917 DeepMRMD:0.829773902893066;iRNA_m5C:0.000463287842184856 51918 chr11 64972254 64972254 1 + C G BLCA 64972254 - 64972234 64972274 41 CGACGGTGCTTCTGCATAAGGGCGAGCACGAAGCTGCAGCC CGACGGTGCTTCTGCATAAGCGCGAGCACGAAGCTGCAGCC Direct Gain 0 0.943642799292621 0 0.82647716999054 prediction 0.887285598585243 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64972254 chr11:64972254 synonymous SNV . 0 21 hm5C_associated_SNPs_131860 0 0 0 0 0 Ribosome 0 0.50023164397953 0.65295433998108 0.000463287959060921 hm5C_site_51918 DeepMRMD:0.65295433998108;iRNA_m5C:0.000463287959060921 51919 chr15 43677998 43677998 1 + G C BLCA 43677998 + 43677978 43678018 41 TCCTTGACTAGCGCCTGATTGAGGAAGAGAACATGCTGGCA TCCTTGACTAGCGCCTGATTCAGGAAGAGAACATGCTGGCA Direct Gain 0 0.943640543836724 0 0.924526572227478 prediction 0.887281087673449 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43677998 chr15:43677998 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_131861 0 0 1 1 1 Ribosome 0 0.500466780332844 0.849053144454956 0.000933560665687505 hm5C_site_51919 DeepMRMD:0.849053144454956;iRNA_m5C:0.000933560665687505 51920 chr1 41006341 41006341 1 + T C rs74575870 41006341 + 41006321 41006361 41 TGTGCTGAGAGAACCCTGTATTGGGATGTGATGTTGGAGAA TGTGCTGAGAGAACCCTGTACTGGGATGTGATGTTGGAGAA Direct Gain 0 0.943628596107933 0 0.673929274082184 prediction 0.887257192215865 Functional Gain - ZNF684 ENSG00000117010 CDS Human protein_coding chr1:41006341 chr1:41006341 synonymous SNV . 0 21 hm5C_associated_SNPs_131862 0 0 1 0 2 nucleoplasm 0 0.50023164392109 0.347858548164368 0.000463287842180193 hm5C_site_51920 DeepMRMD:0.347858548164368;iRNA_m5C:0.000463287842180193 51921 chr7 55221755 55221755 1 + C G GBM 55221755 - 55221735 55221775 41 GGTGGGGTTGTAGAGCATGAGTGGGGGGCAGGTGTCCTTGC GGTGGGGTTGTAGAGCATGACTGGGGGGCAGGTGTCCTTGC Direct Gain 0 0.943623497011727 0 0.856124043464661 prediction 0.887246994023454 Functional Gain - EGFR ENSG00000146648 CDS Human protein_coding chr7:55221755 chr7:55221755 nonsynonymous SNV 0.880 1 21 hm5C_associated_SNPs_131863 0 0 0 0 0 Nucleus 0 0.500231643921896 0.712248086929322 0.000463287843791349 hm5C_site_51921 DeepMRMD:0.712248086929322;iRNA_m5C:0.000463287843791349 51922 chr3 122121674 122121674 1 + G C BRCA 122121674 + 122121654 122121694 41 CTTACCAGAAGCTCTGATTTGAAGAGAATAAATGGATTTTG CTTACCAGAAGCTCTGATTTCAAGAGAATAAATGGATTTTG Direct Gain 0 0.943618236084136 0 0.740019798278809 prediction 0.887236472168272 Functional Gain - FAM162A ENSG00000114023 CDS Human protein_coding chr3:122121674 chr3:122121674 nonsynonymous SNV 0.907 0 21 hm5C_associated_SNPs_131864 0 0 1 0 2 Ribosome 0 0.500231643921091 0.480039596557618 0.000463287842182858 hm5C_site_51922 DeepMRMD:0.480039596557618;iRNA_m5C:0.000463287842182858 51923 chr16 56485531 56485531 1 + G C KIRC 56485531 + 56485511 56485551 41 TGCCTTGGGAAGAGATGAATGGGAAGCGGCCAGCGGAGCCC TGCCTTGGGAAGAGATGAATCGGAAGCGGCCAGCGGAGCCC Direct Gain 0 0.943616205119052 0 0.961719155311584 prediction 0.887232410238104 Functional Gain - OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56485531 chr16:56485531 nonsynonymous SNV 0.935 1 21 hm5C_associated_SNPs_131865 0 0 1 0 0 Ribosome 0 0.500231643921092 0.923438310623168 0.000463287842184856 hm5C_site_51923 DeepMRMD:0.923438310623168;iRNA_m5C:0.000463287842184856 51924 chr6 33179124 33179124 1 + A C rs541306676 33179124 + 33179104 33179144 41 GGGGGGAGCAGTGTAGGGACAGGGGGAGGCGGCACTGGTGG GGGGGGAGCAGTGTAGGGACCGGGGGAGGCGGCACTGGTGG Direct Gain 0 0.943615330131554 0 0.956350564956665 prediction 0.887230660263109 Functional Gain - RING1 ENSG00000204227 CDS Human protein_coding chr6:33179124 chr6:33179124 synonymous SNV . 0 21 hm5C_associated_SNPs_131866 0 0 0 0 0 Ribosome 0 0.500231643921084 0.91270112991333 0.000463287842168203 hm5C_site_51924 DeepMRMD:0.91270112991333;iRNA_m5C:0.000463287842168203 51925 chr18 9887800 9887800 1 + A C UCEC 9887800 + 9887780 9887820 41 TAAAGCCTGAAGAAGAAACAATGGAGTTCCCGGAGGGGGAC TAAAGCCTGAAGAAGAAACACTGGAGTTCCCGGAGGGGGAC Direct Gain 0 0.943599451950749 0 0.4879370033741 prediction 0.887198903901498 Functional Gain - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9887800 chr18:9887800 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_131867 0 0 0 1 0 exosome 0 0.500231643920895 0 0.000463287841790283 hm5C_site_51925 DeepMRMD:0;iRNA_m5C:0.000463287841790283 51926 chr6 44221252 44221252 1 + G C HNSC 44221252 + 44221232 44221272 41 ATGAAGATGAAGTGGCAGCAGAGGAACCCAATGCTGCAGTT ATGAAGATGAAGTGGCAGCACAGGAACCCAATGCTGCAGTT Direct Gain 0 0.94359874662711 0 0.550794363021851 prediction 0.887197493254221 Functional Gain - HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44221252 chr6:44221252 nonsynonymous SNV 0.987 1 21 hm5C_associated_SNPs_131868 0 0 1 0 1 Nucleus 0 0.500231644051207 0.101588726043702 0.000463288102414916 hm5C_site_51926 DeepMRMD:0.101588726043702;iRNA_m5C:0.000463288102414916 51927 chr16 55806397 55806397 1 + T C UCEC 55806397 + 55806377 55806417 41 CCCAGGCTCTGTGACCATCTTTGGAGGGTCAGTGGGAGGAG CCCAGGCTCTGTGACCATCTCTGGAGGGTCAGTGGGAGGAG Direct Gain 0 0.943592120896013 0 0.87244725227356 prediction 0.887184241792027 Functional Gain - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55806397 chr16:55806397 . . 0 21 hm5C_associated_SNPs_131869 0 0 0 0 1 unknown 0 0.500231643921115 0.74489450454712 0.000463287842230375 hm5C_site_51927 DeepMRMD:0.74489450454712;iRNA_m5C:0.000463287842230375 51928 chr7 63529967 63529967 1 + A C STAD 63529967 + 63529947 63529987 41 TTGGAATGCGAGGAGACAGAAGACAGTAGCCAAACACCCAG TTGGAATGCGAGGAGACAGACGACAGTAGCCAAACACCCAG Direct Gain 0 0.943563718714612 0 0.151632845401764 prediction 0.887127437429224 Functional Gain - ZNF727 ENSG00000257482 CDS Human other chr7:63529967 chr7:63529967 nonsynonymous SNV 0.039 0 21 hm5C_associated_SNPs_131870 0 0 0 0 2 exosome 0 0.500231643921091 0 0.000463287842182192 hm5C_site_51928 DeepMRMD:0;iRNA_m5C:0.000463287842182192 51929 chr2 233404755 233404755 1 + T C UCEC 233404755 + 233404735 233404775 41 TCGCAGACCTGATGCAAAACTACGACCCCAACCTGCGGCCC TCGCAGACCTGATGCAAAACCACGACCCCAACCTGCGGCCC Direct Gain 0 0.943558571459645 0 0.361070066690445 prediction 0.887117142919289 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233404755 chr2:233404755 nonsynonymous SNV 0.130 4 21 hm5C_associated_SNPs_131871 0 0 0 0 2 chromatin 0 0.500231718705286 0 0.000463437410572975 hm5C_site_51929 DeepMRMD:0;iRNA_m5C:0.000463437410572975 51930 chr7 150145150 150145150 1 + A G rs566618769 150145150 - 150145130 150145170 41 CCTGTAATCCCAGCACTTCCTGGGAGGCCGAGGCCGGCGGC CCTGTAATCCCAGCACTTCCCGGGAGGCCGAGGCCGGCGGC Direct Gain 0 0.943552087697474 0 0.969434261322021 prediction 0.887104175394948 Functional Gain - LINC00996 ENSG00000242258 ncRNA_exonic Human lincRNA chr7:150145150 chr7:150145150 . . 0 21 hm5C_associated_SNPs_131872 0 0 0 0 0 unknown 0 0.500231643921092 0.938868522644042 0.000463287842184856 hm5C_site_51930 DeepMRMD:0.938868522644042;iRNA_m5C:0.000463287842184856 51931 chr19 59093973 59093973 1 + A G rs184706594 59093973 - 59093953 59093993 41 ACGCCAAGGCGGGTGGATCATGGGGTCAGGAGACCGAGACC ACGCCAAGGCGGGTGGATCACGGGGTCAGGAGACCGAGACC Direct Gain 0 0.943541872861604 0 0.945522785186768 prediction 0.887083745723207 Functional Gain - CENPBD1P1 ENSG00000213753;ENSG00000268784 ncRNA_exonic Human other chr19:59093973 chr19:59093973 . . 0 21 hm5C_associated_SNPs_131873 0 0 0 0 0 unknown 0 0.500231645131343 0.891045570373536 0.000463290262685545 hm5C_site_51931 DeepMRMD:0.891045570373536;iRNA_m5C:0.000463290262685545 51932 chr10 29776152 29776152 1 + G C HNSC 29776152 + 29776132 29776172 41 AGGAAGCAGCAGTGGGGAGAGAGCAGGAGGAAGCAGTCCCC AGGAAGCAGCAGTGGGGAGACAGCAGGAGGAAGCAGTCCCC Direct Gain 0 0.943496864521101 0 0.787646651268005 prediction 0.886993729042202 Functional Gain - SVIL ENSG00000197321 CDS Human protein_coding chr10:29776152 chr10:29776152 synonymous SNV . 0 21 hm5C_associated_SNPs_131874 0 0 0 0 1 Nucleus 0 0.500231643921094 0.57529330253601 0.000463287842187077 hm5C_site_51932 DeepMRMD:0.57529330253601;iRNA_m5C:0.000463287842187077 51933 chr5 140590325 140590325 1 + G C rs528495738 140590325 + 140590305 140590345 41 CCACGGAGCCCGGGCTATTCGGCGTGTGGGCGCACAATGGC CCACGGAGCCCGGGCTATTCCGCGTGTGGGCGCACAATGGC Direct Gain 0 0.943496147903614 0 0.871288299560547 prediction 0.886992295807228 Functional Gain - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140590325 chr5:140590325 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_131875 0 0 0 0 0 exosome 0 0.50023164392112 0.742576599121094 0.000463287842240589 hm5C_site_51933 DeepMRMD:0.742576599121094;iRNA_m5C:0.000463287842240589 51934 chr20 2539295 2539295 1 + G C CESC 2539295 + 2539275 2539315 41 CAGGAGCGGGGCGAGGCAGAGAGGACCTGCGAGGGCAGGAG CAGGAGCGGGGCGAGGCAGACAGGACCTGCGAGGGCAGGAG Direct Gain 0 0.943490666534563 0 0.824836075305939 prediction 0.886981333069126 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2539295 chr20:2539295 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_131876 0 0 0 0 0 exosome 0 0.500231643921071 0.649672150611878 0.000463287842141114 hm5C_site_51934 DeepMRMD:0.649672150611878;iRNA_m5C:0.000463287842141114 51935 chr15 51296769 51296769 1 + T C rs28456256 51296769 + 51296749 51296789 41 ATACAGAGCTGTCTAATGGGTGGGAGACATGTAATGGTAGA ATACAGAGCTGTCTAATGGGCGGGAGACATGTAATGGTAGA Direct Gain 0 0.943479763987056 0 0.839207768440247 prediction 0.886959527974113 Functional Gain - AP4E1 ENSG00000081014 UTR3 Human protein_coding chr15:51296769 chr15:51296769 . . 0 21 hm5C_associated_SNPs_131877 0 0 1 0 0 Nucleus 0 0.50023165129254 0.678415536880494 0.000463302585080205 hm5C_site_51935 DeepMRMD:0.678415536880494;iRNA_m5C:0.000463302585080205 51936 chr1 990608 990608 1 + C G rs568383209 990608 - 990588 990628 41 GGGCAGGCGCAGTGCAAGGCGGGGGCTCAGCACCTTGAGGC GGGCAGGCGCAGTGCAAGGCCGGGGCTCAGCACCTTGAGGC Direct Gain 0 0.943468584734097 0 0.949522793292999 prediction 0.886937169468194 Functional Gain - AGRN ENSG00000242590 ncRNA_intronic Human sense_intronic chr1:990608 chr1:990608 . . 0 21 hm5C_associated_SNPs_131878 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921096 0.899045586585998 0.00046328784219174 hm5C_site_51936 DeepMRMD:0.899045586585998;iRNA_m5C:0.00046328784219174 51937 chr15 41020921 41020921 1 + T C SKCM 41020921 + 41020901 41020941 41 TCTCATAGGTATGGTCTCTCTGGCAGTGATGTCCTGGATAA TCTCATAGGTATGGTCTCTCCGGCAGTGATGTCCTGGATAA Direct Gain 0 0.943464474906032 0 0.847594857215881 prediction 0.886928949812064 Functional Gain - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41020921 chr15:41020921 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_131879 0 0 1 0 1 Cytosol 0 0.500231318279031 0.695189714431762 0.000462636558062668 hm5C_site_51937 DeepMRMD:0.695189714431762;iRNA_m5C:0.000462636558062668 51938 chr7 89749028 89749028 1 + G C rs17136336 89749028 + 89749008 89749048 41 CGGCGGAGGATCCGAAATGTGGAAAATCGAAAAGGCTTGGA CGGCGGAGGATCCGAAATGTCGAAAATCGAAAAGGCTTGGA Direct Gain 0 0.943463685957263 0 0.572412967681885 prediction 0.886927371914526 Functional Gain - DPY19L2P4 ENSG00000235436 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:89749028 chr7:89749028 . . 0 21 hm5C_associated_SNPs_131880 0 0 0 0 0 unknown 0 0.500231643921092 0.14482593536377 0.000463287842184856 hm5C_site_51938 DeepMRMD:0.14482593536377;iRNA_m5C:0.000463287842184856 51939 chr19 41829693 41829693 1 + A G rs9282870 41829693 - 41829673 41829713 41 CAGGGCGGCAGGGGGCTCCATGGGGCGGGCCCTGCGGCCAG CAGGGCGGCAGGGGGCTCCACGGGGCGGGCCCTGCGGCCAG Direct Gain 0 0.943453008510462 0 0.92586749792099 prediction 0.886906017020924 Functional Gain - CCDC97 ENSG00000142039 UTR3 Human protein_coding chr19:41829693 chr19:41829693 . . 0 21 hm5C_associated_SNPs_131881 0 0 1 0 0 chromatin 0 0.500231643887235 0.85173499584198 0.000463287774469023 hm5C_site_51939 DeepMRMD:0.85173499584198;iRNA_m5C:0.000463287774469023 51940 chr1 220267669 220267669 1 + G C rs116823205 220267669 + 220267649 220267689 41 CCGGGATGGCAAGGGGCGACGAAGAGGCTTCTGGTGCGGTC CCGGGATGGCAAGGGGCGACCAAGAGGCTTCTGGTGCGGTC Direct Gain 0 0.943442685841434 0 0.908679187297821 prediction 0.886885371682868 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220267669 chr1:220267669 synonymous SNV . 0 21 hm5C_associated_SNPs_131882 1 0 1 0 0 Ribosome 0 0.500231643921332 0.817358374595642 0.000463287842664473 hm5C_site_51940 DeepMRMD:0.817358374595642;iRNA_m5C:0.000463287842664473 not specified not specified 51941 chr1 70877186 70877186 1 + G C rs529824425 70877186 + 70877166 70877206 41 TCCATGTGGGCCAGGATCCAGAGCAATGGACCTCCAGGGCT TCCATGTGGGCCAGGATCCACAGCAATGGACCTCCAGGGCT Direct Gain 0 0.943413359097377 0 0.553562641143799 prediction 0.886826718194754 Functional Gain - CTH ENSG00000116761 CDS Human protein_coding chr1:70877186 chr1:70877186 nonsynonymous SNV 0.174 2 21 hm5C_associated_SNPs_131883 0 0 1 1 1 Cytosol 0 0.500231643918987 0.107125282287598 0.000463287837974669 hm5C_site_51941 DeepMRMD:0.107125282287598;iRNA_m5C:0.000463287837974669 51942 chr17 6354162 6354162 1 + T C rs62061024 6354162 + 6354142 6354182 41 CAGGGACTCGGAGGAAGGCATAGGAGATATTTCCAGGCTTA CAGGGACTCGGAGGAAGGCACAGGAGATATTTCCAGGCTTA Direct Gain 0 0.943413161972831 0 0.907273769378662 prediction 0.886826323945662 Functional Gain - PIMREG ENSG00000129195 UTR3 Human protein_coding chr17:6354162 chr17:6354162 . . 0 21 hm5C_associated_SNPs_131884 0 0 1 0 0 unknown 0 0.500231643921092 0.814547538757324 0.000463287842184856 hm5C_site_51942 DeepMRMD:0.814547538757324;iRNA_m5C:0.000463287842184856 51943 chr1 112533649 112533649 1 + C G rs74527086 112533649 - 112533629 112533669 41 CCGCGGGTCCGCCCAGCGGCGGGGACTGCGCCCTTTGCGCG CCGCGGGTCCGCCCAGCGGCCGGGACTGCGCCCTTTGCGCG Direct Gain 0 0.943407201324201 0 0.878093957901001 prediction 0.886814402648402 Functional Gain - LINC01750 ENSG00000231437 ncRNA_exonic Human lincRNA chr1:112533649 chr1:112533649 . . 0 21 hm5C_associated_SNPs_131885 0 0 0 0 0 unknown 0 0.500231643920856 0.756187915802002 0.000463287841711457 hm5C_site_51943 DeepMRMD:0.756187915802002;iRNA_m5C:0.000463287841711457 51944 chr5 10391786 10391786 1 + G C BLCA 10391786 + 10391766 10391806 41 AAGAGGAGGAGGAGGACAATGAGGAGGAAGATGACGCTGGT AAGAGGAGGAGGAGGACAATCAGGAGGAAGATGACGCTGGT Direct Gain 0 0.943400449166239 0 0.986909568309784 prediction 0.886800898332477 Functional Gain - MARCH6 ENSG00000145495 CDS Human protein_coding chr5:10391786 chr5:10391786 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131886 0 0 1 0 0 Nucleus 0 0.500231643921247 0.973819136619568 0.000463287842494831 hm5C_site_51944 DeepMRMD:0.973819136619568;iRNA_m5C:0.000463287842494831 51945 chr14 29237611 29237611 1 + A G ESCA 29237611 - 29237591 29237631 41 GGCGGCCGTGAGGTGGTGCGTGGCGTACGGGATCTCCCCGT GGCGGCCGTGAGGTGGTGCGCGGCGTACGGGATCTCCCCGT Direct Gain 0 0.943385454483947 0 0.826878786087036 prediction 0.886770908967893 Functional Gain - FOXG1 ENSG00000176165 CDS Human protein_coding chr14:29237611 chr14:29237611 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_131887 0 0 0 0 0 Cytosol 0 0.500231643921092 0.653757572174072 0.000463287842184856 hm5C_site_51945 DeepMRMD:0.653757572174072;iRNA_m5C:0.000463287842184856 51946 chr9 70993248 70993248 1 + T C UCEC 70993248 + 70993228 70993268 41 TGGAGGACCAGGGGGAGAGTTTGGAGTGAAGTTTAATGTTG TGGAGGACCAGGGGGAGAGTCTGGAGTGAAGTTTAATGTTG Direct Gain 0 0.943346720549613 0 0.859074473381042 prediction 0.886693441099226 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:70993248 chr9:70993248 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_131888 0 0 0 0 1 exosome 0 0.500231642529168 0.718148946762084 0.000463285058335039 hm5C_site_51946 DeepMRMD:0.718148946762084;iRNA_m5C:0.000463285058335039 51947 chr5 153056653 153056653 1 + G C LUSC 153056653 + 153056633 153056673 41 TATCTCGCCGGGGGAATGCTGGGGATTGTCTGGCTAACCCA TATCTCGCCGGGGGAATGCTCGGGATTGTCTGGCTAACCCA Direct Gain 0 0.94331956627826 0 0.949361205101013 prediction 0.88663913255652 Functional Gain - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153056653 chr5:153056653 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131889 0 0 0 0 2 exosome 0 0.500231643921649 0.898722410202026 0.000463287843297744 hm5C_site_51947 DeepMRMD:0.898722410202026;iRNA_m5C:0.000463287843297744 51948 chr17 20059342 20059342 1 + A C rs62066869 20059342 + 20059322 20059362 41 GCCCACGGGCGCGGGAGAGCAGCGGCTCCGCCGGCAGCTGC GCCCACGGGCGCGGGAGAGCCGCGGCTCCGCCGGCAGCTGC Direct Gain 0 0.943313993621449 0 0.869034707546234 prediction 0.886627987242897 Functional Gain - SPECC1 ENSG00000128487 UTR5 Human protein_coding chr17:20059342 chr17:20059342 . . 0 21 hm5C_associated_SNPs_131890 0 0 0 0 0 Cytosol 0 0.500231643902392 0.738069415092468 0.000463287804783885 hm5C_site_51948 DeepMRMD:0.738069415092468;iRNA_m5C:0.000463287804783885 51949 chr11 94277505 94277505 1 + G C LUSC 94277505 + 94277485 94277525 41 CCCCGCCCGGCACTTGGGAGGAGCAGGGCAGGGCCCGCGGC CCCCGCCCGGCACTTGGGAGCAGCAGGGCAGGGCCCGCGGC Direct Gain 0 0.943295529978848 0 0.668795347213745 prediction 0.886591059957695 Functional Gain - FUT4 ENSG00000196371 CDS Human protein_coding chr11:94277505 chr11:94277505 nonsynonymous SNV 0.322 0 21 hm5C_associated_SNPs_131891 0 0 1 0 0 Endoplasmic reticulum 0 0.500231643921092 0.33759069442749 0.000463287842184856 hm5C_site_51949 DeepMRMD:0.33759069442749;iRNA_m5C:0.000463287842184856 51950 chr19 51298101 51298101 1 + A G UCEC 51298101 - 51298081 51298121 41 GGCCGGGCACCCGGGGAGGCTGAGAGGCAGGGGCAGGTGGG GGCCGGGCACCCGGGGAGGCCGAGAGGCAGGGGCAGGTGGG Direct Gain 0 0.943256391008519 0 0.837507903575897 prediction 0.886512782017037 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51298101 chr19:51298101 nonsynonymous SNV 0.054 0 21 hm5C_associated_SNPs_131892 0 0 0 0 0 nucleus 0 0.500231643921132 0.675015807151794 0.000463287842263016 hm5C_site_51950 DeepMRMD:0.675015807151794;iRNA_m5C:0.000463287842263016 51951 chr20 34618478 34618478 1 + A G STAD 34618478 - 34618458 34618498 41 TTTCTGGGGTGCCATAAAAATAGGATAACGAGGTTTAGTCG TTTCTGGGGTGCCATAAAAACAGGATAACGAGGTTTAGTCG Direct Gain 0 0.943249800763234 0 0.891140997409821 prediction 0.886499601526467 Functional Gain - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34618478 chr20:34618478 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_131893 0 0 0 0 0 exosome 0 0.500231643926735 0.782281994819642 0.000463287853470273 hm5C_site_51951 DeepMRMD:0.782281994819642;iRNA_m5C:0.000463287853470273 51952 chr12 124171441 124171441 1 + G C BLCA 124171441 + 124171421 124171461 41 CTGCTTCACCGGCGTGTTTGGAGGAGACGTCAATCCTCCTT CTGCTTCACCGGCGTGTTTGCAGGAGACGTCAATCCTCCTT Direct Gain 0 0.943243199455102 0 0.913443148136139 prediction 0.886486398910204 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124171441 chr12:124171441 nonsynonymous SNV 0.751 4 21 hm5C_associated_SNPs_131894 0 0 1 0 1 Nucleus 0 0.500231643920504 0.826886296272278 0.000463287841008242 hm5C_site_51952 DeepMRMD:0.826886296272278;iRNA_m5C:0.000463287841008242 51953 chr20 51872655 51872655 1 + T G rs144361614 51872655 - 51872635 51872675 41 ATTGAGAGTCCCGTAAACTTAGAGATTTGCATACGCTCTTG ATTGAGAGTCCCGTAAACTTCGAGATTTGCATACGCTCTTG Direct Gain 0 0.943213562789097 0 0.563155293464661 prediction 0.886427125578193 Functional Gain - TSHZ2 ENSG00000182463 CDS Human protein_coding chr20:51872655 chr20:51872655 synonymous SNV . 0 21 hm5C_associated_SNPs_131895 0 0 0 0 0 Cytoplasm 0 0.500231643921068 0.126310586929322 0.000463287842135562 hm5C_site_51953 DeepMRMD:0.126310586929322;iRNA_m5C:0.000463287842135562 51954 chr7 142564281 142564281 1 + A G COAD 142564281 - 142564261 142564301 41 GCCAGGACACCGTGATGCTGTTGGATGCCCGGCTCACCTGG GCCAGGACACCGTGATGCTGCTGGATGCCCGGCTCACCTGG Direct Gain 0 0.943192332271806 0 0.816650390625 prediction 0.886384664543611 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564281 chr7:142564281 nonsynonymous SNV 1.000 0 21 hm5C_associated_SNPs_131896 0 0 0 0 0 Endoplasmic reticulum 0 0.500230977929555 0.63330078125 0.00046195585910902 hm5C_site_51954 DeepMRMD:0.63330078125;iRNA_m5C:0.00046195585910902 51955 chr8 97847377 97847377 1 + A G rs113247437 97847377 - 97847357 97847397 41 GAAGGAGGCCACGGATCGAATGAGAGATGCCAAAGCCCCCA GAAGGAGGCCACGGATCGAACGAGAGATGCCAAAGCCCCCA Direct Gain 0 0.943171500331291 0 0.914852201938629 prediction 0.886343000662581 Functional Gain - CPQ ENSG00000104324 CDS Human protein_coding chr8:97847377 chr8:97847377 nonsynonymous SNV 0.983 0 21 hm5C_associated_SNPs_131897 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.829704403877258 0.000463287842184856 hm5C_site_51955 DeepMRMD:0.829704403877258;iRNA_m5C:0.000463287842184856 51956 chr1 111781398 111781398 1 + T C COAD 111781398 + 111781378 111781418 41 GCTGTGGGGTACTGGATACATAAGGGAATGCCATCAGAGAA GCTGTGGGGTACTGGATACACAAGGGAATGCCATCAGAGAA Direct Gain 0 0.943164916391611 0 0.769300580024719 prediction 0.886329832783223 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111781398 chr1:111781398 synonymous SNV . 0 21 hm5C_associated_SNPs_131898 0 0 0 0 1 exosome 0 0.500231643925468 0.538601160049438 0.000463287850935412 hm5C_site_51956 DeepMRMD:0.538601160049438;iRNA_m5C:0.000463287850935412 51957 chr8 145730439 145730439 1 + T C STAD 145730439 + 145730419 145730459 41 GAGGACGTGGCGCGGTACATTGAGAGGCGTGACGGAGGCAT GAGGACGTGGCGCGGTACATCGAGAGGCGTGACGGAGGCAT Direct Gain 0 0.943158958788532 0 0.924784481525421 prediction 0.886317917577064 Functional Gain - GPT ENSG00000167701 CDS Human protein_coding chr8:145730439 chr8:145730439 synonymous SNV . 0 21 hm5C_associated_SNPs_131899 0 0 0 0 2 Cytosol 0 0.500231511459031 0.849568963050842 0.000463022918062439 hm5C_site_51957 DeepMRMD:0.849568963050842;iRNA_m5C:0.000463022918062439 51958 chr1 42922362 42922362 1 + A C OV 42922362 + 42922342 42922382 41 CGGGTGGTGTTGGTTACGTCAGGCGGCACCAAGGTCCCACT CGGGTGGTGTTGGTTACGTCCGGCGGCACCAAGGTCCCACT Direct Gain 0 0.9431587372273 0 0.838578581809998 prediction 0.886317474454599 Functional Gain - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922362 chr1:42922362 synonymous SNV . 0 21 hm5C_associated_SNPs_131900 0 0 1 0 0 Ribosome 0 0.500231671557338 0.677157163619996 0.000463343114675663 hm5C_site_51958 DeepMRMD:0.677157163619996;iRNA_m5C:0.000463343114675663 51959 chr3 40529504 40529504 1 + C G GBM 40529504 - 40529484 40529524 41 TGTTGGGGAGGCAGAGGAGAGAGGATGGCGCAGGGACAGTA TGTTGGGGAGGCAGAGGAGACAGGATGGCGCAGGGACAGTA Direct Gain 0 0.943153161363263 0 0.750241875648499 prediction 0.886306322726526 Functional Gain - ZNF619 ENSG00000177873 CDS Human protein_coding chr3:40529504 chr3:40529504 synonymous SNV . 0 21 hm5C_associated_SNPs_131901 0 0 0 0 0 exosome 0 0.50023174113 0.500483751296998 0.00046348225999937 hm5C_site_51959 DeepMRMD:0.500483751296998;iRNA_m5C:0.00046348225999937 51960 chr16 1291206 1291206 1 + C G ESCA 1291206 - 1291186 1291226 41 TGCCAGGGCCACTTGCTCCTGGGGGCCTCCTGACCCCCGAC TGCCAGGGCCACTTGCTCCTCGGGGCCTCCTGACCCCCGAC Direct Gain 0 0.943141928475788 0 0.966580092906952 prediction 0.886283856951577 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291206 chr16:1291206 synonymous SNV . 0 21 hm5C_associated_SNPs_131902 0 0 0 0 0 exosome 0 0.500231643921092 0.933160185813904 0.000463287842184634 hm5C_site_51960 DeepMRMD:0.933160185813904;iRNA_m5C:0.000463287842184634 51961 chr3 51897303 51897303 1 + T C KIRP 51897303 + 51897283 51897323 41 GCCACTGGCAATGCCACAACTGCCAGACCTGCGCTCTCCTC GCCACTGGCAATGCCACAACCGCCAGACCTGCGCTCTCCTC Direct Gain 0 0.943137958738201 0 0.90535843372345 prediction 0.886275917476403 Functional Gain - IQCF2 ENSG00000184345 CDS Human protein_coding chr3:51897303 chr3:51897303 nonsynonymous SNV 0.989 3 21 hm5C_associated_SNPs_131903 0 0 0 2 0 unknown 0 0.500231630446566 0.8107168674469 0.000463260893132755 hm5C_site_51961 DeepMRMD:0.8107168674469;iRNA_m5C:0.000463260893132755 51962 chr12 121437382 121437382 1 + A G rs1169305 121437382 - 121437362 121437402 41 CGGCTGCAGGTGCTGGATGCTGGCAGGGTCCTGGCTGGGGA CGGCTGCAGGTGCTGGATGCCGGCAGGGTCCTGGCTGGGGA Direct Gain 0 0.943136016569335 0 0.905516862869263 prediction 0.88627203313867 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437382 chr12:121437382 nonsynonymous SNV 0.047 1 21 hm5C_associated_SNPs_131904 4 0 0 0 0 cytosol 0 0.500231645534183 0.811033725738526 0.000463291068365068 hm5C_site_51962 DeepMRMD:0.811033725738526;iRNA_m5C:0.000463291068365068 Maturity-onset diabetes of the young, type 3 Maturity-onset diabetes of the young, type 3 51963 chr2 27802751 27802751 1 + C G rs375978019 27802751 - 27802731 27802771 41 GCTAGAGGTGGAGGCACATCGGGGGGTATTTGACTCCTTAA GCTAGAGGTGGAGGCACATCCGGGGGTATTTGACTCCTTAA Direct Gain 0 0.94312555082778 0 0.94611120223999 prediction 0.886251101655561 Functional Gain - C2orf16 ENSG00000221843 CDS Human protein_coding chr2:27802751 chr2:27802751 synonymous SNV . 0 21 hm5C_associated_SNPs_131905 0 0 0 0 0 chromatin 0 0.500231643533486 0.89222240447998 0.000463287066972962 hm5C_site_51963 DeepMRMD:0.89222240447998;iRNA_m5C:0.000463287066972962 51964 chrX 30237385 30237385 1 + T C UCEC 30237385 + 30237365 30237405 41 TCTGGGAATTCCTGAATATGTTGGGAGTCTATGATGGAGAG TCTGGGAATTCCTGAATATGCTGGGAGTCTATGATGGAGAG Direct Gain 0 0.943104522997132 0 0.370900332927704 prediction 0.886209045994263 Functional Gain - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30237385 chrX:30237385 synonymous SNV . 0 21 hm5C_associated_SNPs_131906 0 0 0 0 0 exosome 0 0.500231643921092 0 0.000463287842184856 hm5C_site_51964 DeepMRMD:0;iRNA_m5C:0.000463287842184856 51965 chr5 174151740 174151740 1 + G C UCS 174151740 + 174151720 174151760 41 GTGGTGGCCGGACCAGGCCCGGGGCCTGGGGGCGCCGAGGG GTGGTGGCCGGACCAGGCCCCGGGCCTGGGGGCGCCGAGGG Direct Gain 0 0.943094687176288 0 0.939891576766968 prediction 0.886189374352575 Functional Gain - MSX2 ENSG00000120149 CDS Human protein_coding chr5:174151740 chr5:174151740 synonymous SNV . 0 21 hm5C_associated_SNPs_131907 0 0 0 0 0 exosome 0 0.500231643928125 0.879783153533936 0.00046328785625005 hm5C_site_51965 DeepMRMD:0.879783153533936;iRNA_m5C:0.00046328785625005 51966 chr2 47601172 47601172 1 + A C LUAD 47601172 + 47601152 47601192 41 CACTGAAATAACCTGCTCTGAGCGAGTGAGAACCTAGTGAG CACTGAAATAACCTGCTCTGCGCGAGTGAGAACCTAGTGAG Direct Gain 0 0.943092024558509 0 0.742414951324463 prediction 0.886184049117019 Functional Gain - EPCAM ENSG00000119888 CDS Human protein_coding chr2:47601172 chr2:47601172 nonsynonymous SNV 0.897 3 21 hm5C_associated_SNPs_131908 0 0 1 0 1 Endoplasmic reticulum 0 0.500218239813247 0.484829902648926 0.000436479626493735 hm5C_site_51966 DeepMRMD:0.484829902648926;iRNA_m5C:0.000436479626493735 51967 chr3 183469915 183469915 1 + C G CESC 183469915 - 183469895 183469935 41 GATGTCAGACTCCGAGGACTGAGGATAGATACAGTCTTCTC GATGTCAGACTCCGAGGACTCAGGATAGATACAGTCTTCTC Direct Gain 0 0.943078767408833 0 0.936989903450012 prediction 0.886157534817666 Functional Gain - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183469915 chr3:183469915 nonsynonymous SNV 0.778 0 21 hm5C_associated_SNPs_131909 0 0 0 0 0 Nucleus 0 0.500231757853488 0.873979806900024 0.00046351570697567 hm5C_site_51967 DeepMRMD:0.873979806900024;iRNA_m5C:0.00046351570697567 51968 chr2 71212048 71212048 1 + A G COAD 71212048 - 71212028 71212068 41 GCACGCCCAGGCGGATGCCCTGCGAGTGGCTGATCTGGGTG GCACGCCCAGGCGGATGCCCCGCGAGTGGCTGATCTGGGTG Direct Gain 0 0.943078581057061 0 0.815859436988831 prediction 0.886157162114122 Functional Gain - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71212048 chr2:71212048 nonsynonymous SNV 0.104 3 21 hm5C_associated_SNPs_131910 0 0 0 0 0 exosome 0 0.500231643854336 0.631718873977662 0.0004632877086721 hm5C_site_51968 DeepMRMD:0.631718873977662;iRNA_m5C:0.0004632877086721 51969 chr20 6750897 6750897 1 + T G COAD 6750897 - 6750877 6750917 41 CTCGTCAGAGGGCTGGGATGAGGGGCGGCCCGACGACGCCG CTCGTCAGAGGGCTGGGATGCGGGGCGGCCCGACGACGCCG Direct Gain 0 0.943069014802141 0 0.970654010772705 prediction 0.886138029604282 Functional Gain - BMP2 ENSG00000125845 CDS Human protein_coding chr20:6750897 chr20:6750897 nonsynonymous SNV 0.123 0 21 hm5C_associated_SNPs_131911 0 0 0 0 0 Ribosome 0 0.500231641943496 0.94130802154541 0.000463283886991128 hm5C_site_51969 DeepMRMD:0.94130802154541;iRNA_m5C:0.000463283886991128 51970 chr5 434045 434045 1 + C G rs575290606 434045 - 434025 434065 41 CTGTCCAGGGCAGGGGCTTTGTGGGTCCTGGAGTCTCCCTC CTGTCCAGGGCAGGGGCTTTCTGGGTCCTGGAGTCTCCCTC Direct Gain 0 0.943063866548844 0 0.875889778137207 prediction 0.886127733097688 Functional Gain - AHRR ENSG00000063438 CDS Human protein_coding chr5:434045 chr5:434045 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131912 0 0 0 0 0 chromatin 0 0.500231643922379 0.751779556274414 0.000463287844757687 hm5C_site_51970 DeepMRMD:0.751779556274414;iRNA_m5C:0.000463287844757687 51971 chr5 176863471 176863471 1 + T G KIRC 176863471 - 176863451 176863491 41 CGCTTGAAGTTCAGCTTCTTAAAGAGGGGGTGCTCCTTCAC CGCTTGAAGTTCAGCTTCTTCAAGAGGGGGTGCTCCTTCAC Direct Gain 0 0.943050687561672 0 0.920257329940796 prediction 0.886101375123343 Functional Gain - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863471 chr5:176863471 nonsynonymous SNV 0.983 2 21 hm5C_associated_SNPs_131913 0 0 0 0 0 Cytosol 0 0.500231643921086 0.840514659881592 0.000463287842172866 hm5C_site_51971 DeepMRMD:0.840514659881592;iRNA_m5C:0.000463287842172866 51972 chr1 153946480 153946480 1 + T C COAD 153946480 + 153946460 153946500 41 AAGGACACTGCTTGAGAAGATGGGAGGGAAGCCAAGACCCA AAGGACACTGCTTGAGAAGACGGGAGGGAAGCCAAGACCCA Direct Gain 0 0.943035720119154 0 0.859327137470245 prediction 0.886071440238309 Functional Gain - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153946480 chr1:153946480 nonsynonymous SNV 0.003 0 21 hm5C_associated_SNPs_131914 0 0 0 0 0 exosome 0 0.500231643921165 0.71865427494049 0.000463287842329185 hm5C_site_51972 DeepMRMD:0.71865427494049;iRNA_m5C:0.000463287842329185 51973 chr6 110300435 110300435 1 + T C UCEC 110300435 + 110300415 110300455 41 GGCGAATGGGGACCCCCTGCTGCGGCGGCTCTAGGAGCCGG GGCGAATGGGGACCCCCTGCCGCGGCGGCTCTAGGAGCCGG Direct Gain 0 0.943026174390648 0 0.800899624824524 prediction 0.886052348781296 Functional Gain - GPR6 ENSG00000146360 CDS Human protein_coding chr6:110300435 chr6:110300435 synonymous SNV . 0 21 hm5C_associated_SNPs_131915 0 0 0 0 0 unknown 0 0.500231643921092 0.601799249649048 0.000463287842184856 hm5C_site_51973 DeepMRMD:0.601799249649048;iRNA_m5C:0.000463287842184856 51974 chr19 747150 747150 1 + A G rs3190776 747150 - 747130 747170 41 GGCCTGGGCCGCGTGGAGGCTGCGGGTCCCACCCGCCAGGA GGCCTGGGCCGCGTGGAGGCCGCGGGTCCCACCCGCCAGGA Direct Gain 0 0.943014718083987 0 0.815266132354736 prediction 0.886029436167974 Functional Gain - PALM ENSG00000099864 UTR3 Human protein_coding chr19:747150 chr19:747150 . . 0 21 hm5C_associated_SNPs_131916 0 0 0 0 0 Cytosol 0 0.500231648262877 0.630532264709472 0.000463296525754053 hm5C_site_51974 DeepMRMD:0.630532264709472;iRNA_m5C:0.000463296525754053 51975 chr12 94072813 94072813 1 + A C UCEC 94072813 + 94072793 94072833 41 GGTCAGGGAGAAGCTGAAGAAGGCAAGGGAAGAGGCCATGA GGTCAGGGAGAAGCTGAAGACGGCAAGGGAAGAGGCCATGA Direct Gain 0 0.943003626218794 0 0.475695937871933 prediction 0.886007252437588 Functional Gain - CRADD ENSG00000169372 CDS Human protein_coding chr12:94072813 chr12:94072813 nonsynonymous SNV 0.974 0 21 hm5C_associated_SNPs_131917 0 0 1 0 1 Ribosome 0 0.500231643921092 0 0.000463287842184856 hm5C_site_51975 DeepMRMD:0;iRNA_m5C:0.000463287842184856 51976 chr1 11849472 11849472 1 + G C rs553811159 11849472 + 11849452 11849492 41 ACCGCGGGGTTGGGGGCTTGGGGCAGAGCATGGGGCCCAGC ACCGCGGGGTTGGGGGCTTGCGGCAGAGCATGGGGCCCAGC Direct Gain 0 0.943001536623345 0 0.825892925262451 prediction 0.88600307324669 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11849472 chr1:11849472 nonsynonymous SNV 0.281 0 21 hm5C_associated_SNPs_131918 0 0 0 0 0 chromatin 0 0.500231648041402 0.651785850524902 0.000463296082804598 hm5C_site_51976 DeepMRMD:0.651785850524902;iRNA_m5C:0.000463296082804598 51977 chr2 74687380 74687380 1 + G C HNSC 74687380 + 74687360 74687400 41 CCTTCAAGCCCCCAGCCTACGAGGATGTGGTTCACCGCCCA CCTTCAAGCCCCCAGCCTACCAGGATGTGGTTCACCGCCCA Direct Gain 0 0.942990968323736 0 0.482103794813156 prediction 0.885981936647473 Functional Gain - WBP1 ENSG00000239779 CDS Human protein_coding chr2:74687380 chr2:74687380 nonsynonymous SNV 0.983 3 21 hm5C_associated_SNPs_131919 0 0 1 0 1 cytosol 0 0.500231643876059 0 0.000463287752117791 hm5C_site_51977 DeepMRMD:0;iRNA_m5C:0.000463287752117791 51978 chr16 88781040 88781040 1 + A G rs8059048 88781040 - 88781020 88781060 41 GGGGGATGGGTGACTGCATCTGGGAGAGACGCGAGGAGGTC GGGGGATGGGTGACTGCATCCGGGAGAGACGCGAGGAGGTC Direct Gain 0 0.942988825859895 0 0.888492047786713 prediction 0.88597765171979 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781040 chr16:88781040 nonsynonymous SNV 0.063 1 21 hm5C_associated_SNPs_131920 0 0 0 0 0 Cytosol 0 0.50023168621038 0.776984095573426 0.000463372420759001 hm5C_site_51978 DeepMRMD:0.776984095573426;iRNA_m5C:0.000463372420759001 51979 chr4 184240790 184240790 1 + T C STAD 184240790 + 184240770 184240810 41 ACTGCGTAGTGGCCCGAAGCTAGGGGAGCGTGGCTGGAGCA ACTGCGTAGTGGCCCGAAGCCAGGGGAGCGTGGCTGGAGCA Direct Gain 0 0.942973865407885 0 0.887318968772888 prediction 0.88594773081577 Functional Gain - CLDN22 ENSG00000177300 CDS Human protein_coding chr4:184240790 chr4:184240790 synonymous SNV . 0 21 hm5C_associated_SNPs_131921 0 0 0 0 0 exosome 0 0.500231643921267 0.774637937545776 0.000463287842533688 hm5C_site_51979 DeepMRMD:0.774637937545776;iRNA_m5C:0.000463287842533688 51980 chr3 49293819 49293819 1 + T C rs147025639 49293819 + 49293799 49293839 41 CCTCTGAGAAACCAGTTTTATGGCAGGCCCAGGCCCTCCCT CCTCTGAGAAACCAGTTTTACGGCAGGCCCAGGCCCTCCCT Direct Gain 0 0.942971546625464 0 0.765538096427917 prediction 0.885943093250928 Functional Gain - CCDC36 ENSG00000173421 CDS Human protein_coding chr3:49293819 chr3:49293819 nonsynonymous SNV 0.006 1 21 hm5C_associated_SNPs_131922 0 0 0 0 0 Nucleus 0 0.500231643921092 0.531076192855834 0.000463287842184856 hm5C_site_51980 DeepMRMD:0.531076192855834;iRNA_m5C:0.000463287842184856 51981 chrX 102612632 102612632 1 + T C rs755806558 102612632 + 102612612 102612652 41 GATGAAATCCTGTCAAAAAATGGAAGGAAAACCAGAAAATG GATGAAATCCTGTCAAAAAACGGAAGGAAAACCAGAAAATG Direct Gain 0 0.9429689068321 0 0.736042618751526 prediction 0.8859378136642 Functional Gain - TCEAL9 ENSG00000185222 CDS Human protein_coding chrX:102612632 chrX:102612632 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_131923 0 0 1 0 2 Cytosol 0 0.500231692380713 0.472085237503052 0.000463384761426822 hm5C_site_51981 DeepMRMD:0.472085237503052;iRNA_m5C:0.000463384761426822 51982 chr8 143782019 143782019 1 + A C COAD 143782019 + 143781999 143782039 41 CGCCAACCTGACTGCGAGACAACGAGATCCAGAGGACTCCC CGCCAACCTGACTGCGAGACCACGAGATCCAGAGGACTCCC Direct Gain 0 0.94296474123334 0 0.40545243024826 prediction 0.88592948246668 Functional Gain - LY6K ENSG00000160886 CDS Human protein_coding chr8:143782019 chr8:143782019 nonsynonymous SNV 0.190 1 21 hm5C_associated_SNPs_131924 0 0 1 0 1 nucleus 0 0.500231643873829 0 0.000463287747657803 hm5C_site_51982 DeepMRMD:0;iRNA_m5C:0.000463287747657803 51983 chr7 73520468 73520468 1 + A G rs142288587 73520468 - 73520448 73520488 41 GCCCGTGGCCCAGTGTATCGTGAGGGTCATGCTCGAGGGTC GCCCGTGGCCCAGTGTATCGCGAGGGTCATGCTCGAGGGTC Direct Gain 0 0.942936127851517 0 0.769589006900787 prediction 0.885872255703033 Functional Gain - LIMK1 ENSG00000106683 CDS Human protein_coding chr7:73520468 chr7:73520468 nonsynonymous SNV 0.445 2 21 hm5C_associated_SNPs_131925 0 0 0 0 0 Ribosome 0 0.50023208376918 0.539178013801574 0.000464167538360538 hm5C_site_51983 DeepMRMD:0.539178013801574;iRNA_m5C:0.000464167538360538 51984 chrX 48759733 48759733 1 + G C LUAD 48759733 + 48759713 48759753 41 GACAAGGCAGACCGGGAAGAGGGCAAAGAACGGCGCCACCA GACAAGGCAGACCGGGAAGACGGCAAAGAACGGCGCCACCA Direct Gain 0 0.942914930725195 0 0.703946173191071 prediction 0.885829861450391 Functional Gain - PQBP1 ENSG00000102103 CDS Human protein_coding chrX:48759733 chrX:48759733 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_131926 0 0 1 0 1 Ribosome 0 0.500231645100986 0.407892346382142 0.000463290201971889 hm5C_site_51984 DeepMRMD:0.407892346382142;iRNA_m5C:0.000463290201971889 51985 chr3 100000628 100000628 1 + T C UCEC 100000628 + 100000608 100000648 41 AAGGTGATAGTTTGGCATCATGGGATGGTATTTTAGACTTG AAGGTGATAGTTTGGCATCACGGGATGGTATTTTAGACTTG Direct Gain 0 0.942911467008941 0 0.757193565368652 prediction 0.885822934017881 Functional Gain - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100000628 chr3:100000628 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131927 0 0 1 0 2 Ribosome 0 0.500231657783587 0.514387130737304 0.000463315567174272 hm5C_site_51985 DeepMRMD:0.514387130737304;iRNA_m5C:0.000463315567174272 51986 chr11 33628312 33628312 1 + A G rs61735319 33628312 - 33628292 33628332 41 GTCCGAGGTGGGGGGCACCATGGGGAGGGCTGTGGGTTTTA GTCCGAGGTGGGGGGCACCACGGGGAGGGCTGTGGGTTTTA Direct Gain 0 0.942900043942834 0 0.897535681724548 prediction 0.885800087885668 Functional Gain - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33628312 chr11:33628312 nonsynonymous SNV 0.228 0 21 hm5C_associated_SNPs_131928 0 0 0 0 0 exosome 0 0.500231643921841 0.795071363449096 0.000463287843682991 hm5C_site_51986 DeepMRMD:0.795071363449096;iRNA_m5C:0.000463287843682991 51987 chr6 159655402 159655402 1 + A G rs2932988 159655402 - 159655382 159655422 41 GTGGTGGAGAAGTGGCCAGGTGGGGCGCGCGTGGTGTACTG GTGGTGGAGAAGTGGCCAGGCGGGGCGCGCGTGGTGTACTG Direct Gain 0 0.94289776932191 0 0.877382636070251 prediction 0.88579553864382 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159655402 chr6:159655402 synonymous SNV . 0 21 hm5C_associated_SNPs_131929 0 0 0 0 0 Endoplasmic reticulum 0 0.500231198729674 0.754765272140502 0.000462397459348063 hm5C_site_51987 DeepMRMD:0.754765272140502;iRNA_m5C:0.000462397459348063 51988 chr3 138327951 138327951 1 + T C rs61699523 138327951 + 138327931 138327971 41 GCGGCGGCGGCGGGCGGTGTTTGCGCGGTCGGTGAGACCCG GCGGCGGCGGCGGGCGGTGTCTGCGCGGTCGGTGAGACCCG Direct Gain 0 0.942895717202091 0 0.84740948677063 prediction 0.885791434404181 Functional Gain - FAIM ENSG00000158234 UTR5 Human protein_coding chr3:138327951 chr3:138327951 . . 0 21 hm5C_associated_SNPs_131930 0 0 0 0 1 Ribosome 0 0.500330679711152 0.69481897354126 0.000661359422303498 hm5C_site_51988 DeepMRMD:0.69481897354126;iRNA_m5C:0.000661359422303498 51989 chr6 83903075 83903075 1 + C G rs58536998 83903075 - 83903055 83903095 41 GCCAGCTGCGCGCGACCTGCGGCGAGGCGGGGGCGGGGCTG GCCAGCTGCGCGCGACCTGCCGCGAGGCGGGGGCGGGGCTG Direct Gain 0 0.942895201616152 0 0.895357370376587 prediction 0.885790403232303 Functional Gain - RWDD2A ENSG00000013375 intronic Human protein_coding chr6:83903075 chr6:83903075 . . 0 21 hm5C_associated_SNPs_131931 0 0 0 0 0 Cytosol 0 0.500231643921093 0.790714740753174 0.000463287842185522 hm5C_site_51989 DeepMRMD:0.790714740753174;iRNA_m5C:0.000463287842185522 51990 chr1 147380514 147380514 1 + G C STAD 147380514 + 147380494 147380534 41 ACTAAGAAGTTCCGGCTGGAGGGGACCCTGCTGAGGACCTA ACTAAGAAGTTCCGGCTGGACGGGACCCTGCTGAGGACCTA Direct Gain 0 0.942895174250245 0 0.70289021730423 prediction 0.88579034850049 Functional Gain - GJA8 ENSG00000121634 CDS Human protein_coding chr1:147380514 chr1:147380514 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131932 0 0 0 0 0 unknown 0 0.500231643921092 0.40578043460846 0.000463287842184856 hm5C_site_51990 DeepMRMD:0.40578043460846;iRNA_m5C:0.000463287842184856 51991 chr20 61943875 61943875 1 + C G LUAD 61943875 - 61943855 61943895 41 TCACCCGGCCAGTCAGCGTAGAGGAGCCACCCCCAGGGTAG TCACCCGGCCAGTCAGCGTACAGGAGCCACCCCCAGGGTAG Direct Gain 0 0.942873594961966 0 0.745930075645447 prediction 0.885747189923932 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61943875 chr20:61943875 nonsynonymous SNV 0.073 2 21 hm5C_associated_SNPs_131933 0 0 0 0 0 exosome 0 0.500231643921093 0.491860151290894 0.000463287842185078 hm5C_site_51991 DeepMRMD:0.491860151290894;iRNA_m5C:0.000463287842185078 51992 chr1 47157585 47157585 1 + A C COAD 47157585 + 47157565 47157605 41 AGCAAGATGGACGCTGTTTAAAGTATTGCCAATGGAAGCTA AGCAAGATGGACGCTGTTTACAGTATTGCCAATGGAAGCTA Direct Gain 0 0.942818005290739 0 0.581330299377441 prediction 0.885636010581477 Functional Gain - EFCAB14 ENSG00000159658 CDS Human protein_coding chr1:47157585 chr1:47157585 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131934 0 0 0 0 1 Endoplasmic reticulum 0 0.500231327732557 0.162660598754882 0.000462655465113038 hm5C_site_51992 DeepMRMD:0.162660598754882;iRNA_m5C:0.000462655465113038 51993 chrX 70338683 70338683 1 + C G BLCA 70338683 - 70338663 70338703 41 CTCCTTCTGTTTGGGGTCCTGAGGGTAAACATCGGGAGGCC CTCCTTCTGTTTGGGGTCCTCAGGGTAAACATCGGGAGGCC Direct Gain 0 0.942803852494465 0 0.949093341827393 prediction 0.885607704988929 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70338683 chrX:70338683 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_131935 0 0 0 0 0 Cytosol 0 0.500231643921092 0.898186683654786 0.000463287842184856 hm5C_site_51993 DeepMRMD:0.898186683654786;iRNA_m5C:0.000463287842184856 51994 chr21 39671908 39671908 1 + C G LUSC 39671908 - 39671888 39671928 41 TGAGGAAGGGGCTCTCAGAGGAGGAGTCCACGTGGAATTTG TGAGGAAGGGGCTCTCAGAGCAGGAGTCCACGTGGAATTTG Direct Gain 0 0.942798694812241 0 0.765523910522461 prediction 0.885597389624482 Functional Gain - KCNJ15 ENSG00000157551 CDS Human protein_coding chr21:39671908 chr21:39671908 nonsynonymous SNV 0.978 5 21 hm5C_associated_SNPs_131936 0 0 0 0 0 exosome 0 0.500231643921358 0.531047821044922 0.000463287842715099 hm5C_site_51994 DeepMRMD:0.531047821044922;iRNA_m5C:0.000463287842715099 51995 chr3 155838427 155838427 1 + G C LUSC 155838427 + 155838407 155838447 41 GCAGCCCGGACAGGGGCAGCGGGGAGTCAGATCTCAGAGGA GCAGCCCGGACAGGGGCAGCCGGGAGTCAGATCTCAGAGGA Direct Gain 0 0.942790014191269 0 0.914702892303467 prediction 0.885580028382539 Functional Gain - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:155838427 chr3:155838427 synonymous SNV . 0 21 hm5C_associated_SNPs_131937 0 0 0 0 0 nucleoplasm 0 0.500231643706623 0.829405784606934 0.000463287413246194 hm5C_site_51995 DeepMRMD:0.829405784606934;iRNA_m5C:0.000463287413246194 51996 chr15 101586211 101586211 1 + T G LUSC 101586211 - 101586191 101586231 41 GGTGTCCAGGCCAGGTTTAGATGGAAGGAGATGGGGCAGGA GGTGTCCAGGCCAGGTTTAGCTGGAAGGAGATGGGGCAGGA Direct Gain 0 0.942780336665104 0 0.660197496414185 prediction 0.885560673330209 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101586211 chr15:101586211 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_131938 0 0 0 0 0 Nucleus 0 0.500231643921097 0.32039499282837 0.000463287842194848 hm5C_site_51996 DeepMRMD:0.32039499282837;iRNA_m5C:0.000463287842194848 51997 chr5 23527637 23527637 1 + A C LIHC 23527637 + 23527617 23527657 41 GGGAGTGTGGGCGGGGCTTTAGCAATAAGTCACACCTCCTC GGGAGTGTGGGCGGGGCTTTCGCAATAAGTCACACCTCCTC Direct Gain 0 0.942778141020528 0 0.941134095191956 prediction 0.885556282041057 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23527637 chr5:23527637 nonsynonymous SNV 0.035 0 21 hm5C_associated_SNPs_131939 0 0 0 0 0 unknown 0 0.500231643921094 0.882268190383912 0.000463287842187743 hm5C_site_51997 DeepMRMD:0.882268190383912;iRNA_m5C:0.000463287842187743 51998 chr17 47004478 47004478 1 + T C SKCM 47004478 + 47004458 47004498 41 GGGACAGAGACAGACCTTCATGGGAGCCTGAGGGTTTAGAC GGGACAGAGACAGACCTTCACGGGAGCCTGAGGGTTTAGAC Direct Gain 0 0.942777017715607 0 0.72973620891571 prediction 0.885554035431215 Functional Gain - UBE2Z ENSG00000159202 CDS Human protein_coding chr17:47004478 chr17:47004478 synonymous SNV . 0 21 hm5C_associated_SNPs_131940 0 0 1 0 0 Ribosome 0 0.500231643921092 0.45947241783142 0.000463287842184856 hm5C_site_51998 DeepMRMD:0.45947241783142;iRNA_m5C:0.000463287842184856 51999 chr19 36257761 36257761 1 + T C COAD 36257761 + 36257741 36257781 41 GGCCAGAGGATGACATTCTGTACCAGTGGCGGCAGCGGCGG GGCCAGAGGATGACATTCTGCACCAGTGGCGGCAGCGGCGG Direct Gain 0 0.942774067365929 0 0.190090209245682 prediction 0.885548134731859 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36257761 chr19:36257761 nonsynonymous SNV 0.984 3 21 hm5C_associated_SNPs_131941 0 0 1 0 2 membrane 0 0.500229136331698 0 0.000458272663396153 hm5C_site_51999 DeepMRMD:0;iRNA_m5C:0.000458272663396153 52000 chr9 139685808 139685808 1 + C G rs201674770 139685808 - 139685788 139685828 41 CACCATGGTTGGCAGGGCTCGGGGAGCGGGCCTGCGCAGGC CACCATGGTTGGCAGGGCTCCGGGAGCGGGCCTGCGCAGGC Direct Gain 0 0.942755952587334 0 0.932855248451233 prediction 0.885511905174668 Functional Gain - TMEM141 ENSG00000244187 UTR5 Human protein_coding chr9:139685808 chr9:139685808 . . 0 21 hm5C_associated_SNPs_131942 0 0 0 0 0 Ribosome 0 0.50023164392168 0.865710496902466 0.000463287843360582 hm5C_site_52000 DeepMRMD:0.865710496902466;iRNA_m5C:0.000463287843360582 52001 chr17 4931031 4931031 1 + T C rs112574147 4931031 + 4931011 4931051 41 TGTCTGTAATCCCAGCACTTTGGGAGGCGGAGGCGGGAGGA TGTCTGTAATCCCAGCACTTCGGGAGGCGGAGGCGGGAGGA Direct Gain 0 0.942750494283032 0 0.84029346704483 prediction 0.885500988566064 Functional Gain - KIF1C ENSG00000129250 UTR3 Human protein_coding chr17:4931031 chr17:4931031 . . 0 21 hm5C_associated_SNPs_131943 0 0 0 0 0 Ribosome 0 0.500231643930005 0.68058693408966 0.000463287860009265 hm5C_site_52001 DeepMRMD:0.68058693408966;iRNA_m5C:0.000463287860009265 52002 chrX 134483075 134483075 1 + T C UCEC 134483075 + 134483055 134483095 41 CTTGGAAGAACTGGCACCAGTGGGAACGGCACACATACCAC CTTGGAAGAACTGGCACCAGCGGGAACGGCACACATACCAC Direct Gain 0 0.942736192054847 0 0.951131701469421 prediction 0.885472384109694 Functional Gain - ZNF449 ENSG00000173275 CDS Human protein_coding chrX:134483075 chrX:134483075 nonsynonymous SNV 0.992 0 21 hm5C_associated_SNPs_131944 0 0 1 0 1 cytosol 0 0.500231643921106 0.902263402938842 0.000463287842212612 hm5C_site_52002 DeepMRMD:0.902263402938842;iRNA_m5C:0.000463287842212612 52003 chr19 9204520 9204520 1 + C G BLCA 9204520 - 9204500 9204540 41 ATCACCATCCCTGCCACAATGAGGATGAAGATCCTATTCAC ATCACCATCCCTGCCACAATCAGGATGAAGATCCTATTCAC Direct Gain 0 0.942719644016881 0 0.918842434883118 prediction 0.885439288033762 Functional Gain - OR1M1 ENSG00000170929 CDS Human protein_coding chr19:9204520 chr19:9204520 synonymous SNV . 0 21 hm5C_associated_SNPs_131945 0 0 0 0 0 unknown 0 0.50450745677984 0.837684869766236 0.00901491355967909 hm5C_site_52003 DeepMRMD:0.837684869766236;iRNA_m5C:0.00901491355967909 52004 chrX 595546 595546 1 + C G LUAD 595546 - 595526 595566 41 CCTACCTGCACGCGCGCCTCGGAGAGCCCCAGGCGCTGGCT CCTACCTGCACGCGCGCCTCCGAGAGCCCCAGGCGCTGGCT Direct Gain 0 0.942718044307496 0 0.857658267021179 prediction 0.885436088614992 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:595546 chrX:595546 synonymous SNV . 0 21 hm5C_associated_SNPs_131946 0 0 0 0 0 Nucleus 0 0.500231643921092 0.715316534042358 0.000463287842184856 hm5C_site_52004 DeepMRMD:0.715316534042358;iRNA_m5C:0.000463287842184856 52005 chr16 19179680 19179680 1 + T C rs112301431 19179680 + 19179660 19179700 41 CAGCCTGGGGAGCGCCTCGGTGGGGAGCACGGGACAGCGAG CAGCCTGGGGAGCGCCTCGGCGGGGAGCACGGGACAGCGAG Direct Gain 0 0.942709157761061 0 0.92224383354187 prediction 0.885418315522122 Functional Gain - SYT17 ENSG00000103528 UTR5 Human protein_coding chr16:19179680 chr16:19179680 . . 0 21 hm5C_associated_SNPs_131947 0 0 0 0 0 exosome 0 0.500231643921092 0.84448766708374 0.000463287842184856 hm5C_site_52005 DeepMRMD:0.84448766708374;iRNA_m5C:0.000463287842184856 52006 chr22 38201558 38201558 1 + G C LUAD 38201558 + 38201538 38201578 41 CCAGACAGGCCACCATGACCGAGAATTCCACGTCCGCCCCT CCAGACAGGCCACCATGACCCAGAATTCCACGTCCGCCCCT Direct Gain 0 0.942701407055541 0 0.518792986869812 prediction 0.885402814111082 Functional Gain - H1F0 ENSG00000189060 CDS Human protein_coding chr22:38201558 chr22:38201558 nonsynonymous SNV 0.988 2 21 hm5C_associated_SNPs_131948 0 0 1 0 0 Ribosome 0 0.500231643921092 0.037585973739624 0.000463287842184856 hm5C_site_52006 DeepMRMD:0.037585973739624;iRNA_m5C:0.000463287842184856 52007 chr19 1207152 1207152 1 + C G CESC 1207152 - 1207132 1207172 41 CTTCGCAACTTCTTCTTCTTGAGGATCTTGACGGCCCTCCT CTTCGCAACTTCTTCTTCTTCAGGATCTTGACGGCCCTCCT Direct Gain 0 0.942686913135111 0 0.904683887958527 prediction 0.885373826270221 Functional Gain - STK11 ENSG00000118046 CDS Human protein_coding chr19:1207152 chr19:1207152 synonymous SNV . 0 21 hm5C_associated_SNPs_131949 0 0 0 0 0 Ribosome 0 0.500231643921092 0.809367775917054 0.000463287842184856 hm5C_site_52007 DeepMRMD:0.809367775917054;iRNA_m5C:0.000463287842184856 52008 chr7 107334868 107334868 1 + T C BRCA 107334868 + 107334848 107334888 41 GTTGCTGGCATCATCTCTGCTGCGATTGTGATGATCGCCAT GTTGCTGGCATCATCTCTGCCGCGATTGTGATGATCGCCAT Direct Gain 0 0.942679783318895 0 0.909505844116211 prediction 0.885359566637791 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107334868 chr7:107334868 synonymous SNV . 0 21 hm5C_associated_SNPs_131950 0 0 0 0 2 Nucleus 0 0.500231719540643 0.819011688232422 0.000463439081285877 hm5C_site_52008 DeepMRMD:0.819011688232422;iRNA_m5C:0.000463439081285877 52009 chr1 24078045 24078045 1 + C G BLCA 24078045 - 24078025 24078065 41 GGTTGTCTGAAGCGGCCTCTGAGGGAGGCAAACACTTCTTC GGTTGTCTGAAGCGGCCTCTCAGGGAGGCAAACACTTCTTC Direct Gain 0 0.942679461624205 0 0.94029688835144 prediction 0.885358923248411 Functional Gain - ELOA ENSG00000011007 CDS Human protein_coding chr1:24078045 chr1:24078045 stopgain 0.000 0 21 hm5C_associated_SNPs_131951 0 0 0 0 0 unknown 0 0.50023164237256 0.88059377670288 0.000463284745119807 hm5C_site_52009 DeepMRMD:0.88059377670288;iRNA_m5C:0.000463284745119807 52010 chr5 112228295 112228295 1 + T C UCEC 112228295 + 112228275 112228315 41 AATGGCGATTTGTGGTTTATTTGAAATACAACAATGTCCAA AATGGCGATTTGTGGTTTATCTGAAATACAACAATGTCCAA Direct Gain 0 0.942658599136107 0 0.439806789159775 prediction 0.885317198272214 Functional Gain - SRP19 ENSG00000212643 CDS Human protein_coding chr5:112228295 chr5:112228295 nonsynonymous SNV 0.997 3 21 hm5C_associated_SNPs_131952 0 0 0 0 0 Ribosome 0 0.499608793971682 0 0 hm5C_site_52010 DeepMRMD:0;iRNA_m5C:0 52011 chr7 137802678 137802678 1 + T C rs184548096 137802678 + 137802658 137802698 41 AGGAGGCTGAGGCAGAAGAATGGCATGAACCCGGGAGGAGG AGGAGGCTGAGGCAGAAGAACGGCATGAACCCGGGAGGAGG Direct Gain 0 0.942655794039542 0 0.48495477437973 prediction 0.885311588079084 Functional Gain - AKR1D1 ENSG00000122787 UTR3 Human protein_coding chr7:137802678 chr7:137802678 . . 0 21 hm5C_associated_SNPs_131953 1 0 0 0 0 cytosol 0 0.500231643921092 0 0.000463287842184856 hm5C_site_52011 DeepMRMD:0;iRNA_m5C:0.000463287842184856 Congenital Bile Acid Synthesis Defect Congenital Bile Acid Synthesis Defect 52012 chr22 38609876 38609876 1 + C G rs145033364 38609876 - 38609856 38609896 41 CTTTAGAGCTTTGCTGGATAGGGGATCCACAGACATGTTTG CTTTAGAGCTTTGCTGGATACGGGATCCACAGACATGTTTG Direct Gain 0 0.942645646764171 0 0.620383501052856 prediction 0.885291293528342 Functional Gain - MAFF ENSG00000185022 CDS Human protein_coding chr22:38609876 chr22:38609876 nonsynonymous SNV 0.988 1 21 hm5C_associated_SNPs_131954 0 0 0 0 0 Cytosol 0 0.50023164213043 0.240767002105712 0.00046328426086073 hm5C_site_52012 DeepMRMD:0.240767002105712;iRNA_m5C:0.00046328426086073 52013 chr17 61864505 61864505 1 + A G rs558165093 61864505 - 61864485 61864525 41 AAGGCACTGTGGGACTGCTGTGGGAGTTTGGGTTCCTCCTT AAGGCACTGTGGGACTGCTGCGGGAGTTTGGGTTCCTCCTT Direct Gain 0 0.942642024340732 0 0.918334186077118 prediction 0.885284048681464 Functional Gain - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61864505 chr17:61864505 synonymous SNV . 0 21 hm5C_associated_SNPs_131955 0 0 0 0 0 chromatin 0 0.500231643921092 0.836668372154236 0.000463287842184856 hm5C_site_52013 DeepMRMD:0.836668372154236;iRNA_m5C:0.000463287842184856 52014 chr17 17696863 17696863 1 + C G CESC 17696863 - 17696843 17696883 41 GGTACCCTGGGGGAAGGGCAGAGGGGAGGCAATGTCGTTCT GGTACCCTGGGGGAAGGGCACAGGGGAGGCAATGTCGTTCT Direct Gain 0 0.942624364386313 0 0.864867389202118 prediction 0.885248728772626 Functional Gain - RAI1 ENSG00000108557 CDS Human protein_coding chr17:17696863 chr17:17696863 nonsynonymous SNV 0.992 1 21 hm5C_associated_SNPs_131956 0 0 0 0 0 chromatin 0 0.500231643588853 0.729734778404236 0.00046328717770594 hm5C_site_52014 DeepMRMD:0.729734778404236;iRNA_m5C:0.00046328717770594 52015 chr16 71668340 71668340 1 + C G LUAD 71668340 - 71668320 71668360 41 AAGAGGCAGCAGAGGGCTGTGAGGGCTCCACTACAGGCCAT AAGAGGCAGCAGAGGGCTGTCAGGGCTCCACTACAGGCCAT Direct Gain 0 0.942619014960323 0 0.971939325332642 prediction 0.885238029920647 Functional Gain - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71668340 chr16:71668340 synonymous SNV . 0 21 hm5C_associated_SNPs_131957 0 0 0 0 0 Ribosome 0 0.500231643921094 0.943878650665284 0.000463287842187521 hm5C_site_52015 DeepMRMD:0.943878650665284;iRNA_m5C:0.000463287842187521 52016 chr15 81585167 81585167 1 + A G rs186617577 81585167 - 81585147 81585187 41 CTGGGAGGGGTGGGCTCTCCTGGGGCAGCCTGGAGGATGCT CTGGGAGGGGTGGGCTCTCCCGGGGCAGCCTGGAGGATGCT Direct Gain 0 0.942602310920678 0 0.93473744392395 prediction 0.885204621841356 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81585167 chr15:81585167 nonsynonymous SNV 0.238 0 21 hm5C_associated_SNPs_131958 0 0 0 0 0 Nucleus 0 0.500231643956239 0.8694748878479 0.000463287912477517 hm5C_site_52016 DeepMRMD:0.8694748878479;iRNA_m5C:0.000463287912477517 52017 chr20 2635071 2635071 1 + G C BLCA 2635071 + 2635051 2635091 41 TCCCCTGAGGGGTTGTTCATGAGGACCTCCGCCTGCTCTTG TCCCCTGAGGGGTTGTTCATCAGGACCTCCGCCTGCTCTTG Direct Gain 0 0.942596975013824 0 0.782408356666565 prediction 0.885193950027649 Functional Gain - NOP56 ENSG00000101361 CDS Human protein_coding chr20:2635071 chr20:2635071 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_131959 0 0 1 0 1 Cytosol 0 0.500231643921092 0.56481671333313 0.000463287842184856 hm5C_site_52017 DeepMRMD:0.56481671333313;iRNA_m5C:0.000463287842184856 52018 chr1 17572293 17572293 1 + T C rs184638279 17572293 + 17572273 17572313 41 AAGGGGCCGGGGGTGTGAGCTGGGGTTGGGACTCCCCTGAG AAGGGGCCGGGGGTGTGAGCCGGGGTTGGGACTCCCCTGAG Direct Gain 0 0.942565925537046 0 0.972832918167114 prediction 0.885131851074092 Functional Gain - PADI1 ENSG00000142623 UTR3 Human protein_coding chr1:17572293 chr1:17572293 . . 0 21 hm5C_associated_SNPs_131960 0 0 0 0 0 exosome 0 0.500231643869752 0.945665836334228 0.000463287739503437 hm5C_site_52018 DeepMRMD:0.945665836334228;iRNA_m5C:0.000463287739503437 52019 chr8 92082536 92082536 1 + T C SARC 92082536 + 92082516 92082556 41 GTAGCCAATGGAGCCCCGGGTGAGGGTTGAGGGGTGGAAGG GTAGCCAATGGAGCCCCGGGCGAGGGTTGAGGGGTGGAAGG Direct Gain 0 0.942551833475206 0 0.741416811943054 prediction 0.885103666950412 Functional Gain - OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92082536 chr8:92082536 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_131961 0 0 1 0 0 Ribosome 0 0.500231643921072 0.482833623886108 0.000463287842144888 hm5C_site_52019 DeepMRMD:0.482833623886108;iRNA_m5C:0.000463287842144888 52020 chrX 49142699 49142699 1 + C G UCEC 49142699 - 49142679 49142719 41 TGGGGGACATCCCTCCATCTGTGGAGCCCTCCCCACCACCC TGGGGGACATCCCTCCATCTCTGGAGCCCTCCCCACCACCC Direct Gain 0 0.942543835121529 0 0.863822460174561 prediction 0.885087670243057 Functional Gain - PPP1R3F ENSG00000049769 CDS Human protein_coding chrX:49142699 chrX:49142699 nonsynonymous SNV 0.984 0 21 hm5C_associated_SNPs_131962 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643892085 0.727644920349122 0.000463287784170374 hm5C_site_52020 DeepMRMD:0.727644920349122;iRNA_m5C:0.000463287784170374 52021 chr18 74962224 74962224 1 + A C rs13306374 74962224 + 74962204 74962244 41 AGCGGGCGGAGGCGCCCGGGAAGGGGACCCCAGTGCTCTCG AGCGGGCGGAGGCGCCCGGGCAGGGGACCCCAGTGCTCTCG Direct Gain 0 0.942543557862016 0 0.921903371810913 prediction 0.885087115724031 Functional Gain - GALR1 ENSG00000166573 upstream Human protein_coding chr18:74962224 chr18:74962224 . . 0 21 hm5C_associated_SNPs_131963 0 0 0 0 0 exosome 0 0.500231539896454 0.843806743621826 0.000463079792908383 hm5C_site_52021 DeepMRMD:0.843806743621826;iRNA_m5C:0.000463079792908383 52022 chr20 35507461 35507461 1 + A G LGG 35507461 - 35507441 35507481 41 GGATGGCCGGTGACTCTTGGTGGGAAGTGAAAGCTGAGCTG GGATGGCCGGTGACTCTTGGCGGGAAGTGAAAGCTGAGCTG Direct Gain 0 0.942534939854563 0 0.866376757621765 prediction 0.885069879709125 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507461 chr20:35507461 synonymous SNV . 0 21 hm5C_associated_SNPs_131964 0 0 0 0 0 membrane 0 0.500231643921092 0.73275351524353 0.000463287842184856 hm5C_site_52022 DeepMRMD:0.73275351524353;iRNA_m5C:0.000463287842184856 52023 chr7 86781957 86781957 1 + A G rs557591522 86781957 - 86781937 86781977 41 TTGCGCCAGCCGGCGGGAGCTAGCGGGCAGCAAGGGGGCCG TTGCGCCAGCCGGCGGGAGCCAGCGGGCAGCAAGGGGGCCG Direct Gain 0 0.942518228704083 0 0.894952952861786 prediction 0.885036457408166 Functional Gain - DMTF1 ENSG00000135164 UTR5 Human protein_coding chr7:86781957 chr7:86781957 . . 0 21 hm5C_associated_SNPs_131965 0 0 0 0 0 Nucleus 0 0.500231642799902 0.789905905723572 0.000463285599804797 hm5C_site_52023 DeepMRMD:0.789905905723572;iRNA_m5C:0.000463285599804797 52024 chr12 13366730 13366730 1 + C G UCEC 13366730 - 13366710 13366750 41 ACCAGTGTGGTGGCCCCTGAGAGGAAGAACCGGTTTCCCTT ACCAGTGTGGTGGCCCCTGACAGGAAGAACCGGTTTCCCTT Direct Gain 0 0.942489475314204 0 0.874139189720154 prediction 0.884978950628408 Functional Gain - EMP1 ENSG00000134531 CDS Human protein_coding chr12:13366730 chr12:13366730 synonymous SNV . 0 21 hm5C_associated_SNPs_131966 0 0 0 0 0 Nucleus 0 0.500231643921136 0.748278379440308 0.000463287842271232 hm5C_site_52024 DeepMRMD:0.748278379440308;iRNA_m5C:0.000463287842271232 52025 chr2 242089049 242089049 1 + A C rs550766380 242089049 + 242089029 242089069 41 CCCCTACGGCGCTTCGGAGGAGCCAAAGGAATAATGGGCGC CCCCTACGGCGCTTCGGAGGCGCCAAAGGAATAATGGGCGC Direct Gain 0 0.942483526360754 0 0.734128654003143 prediction 0.884967052721509 Functional Gain - PASK;PPP1R7 ENSG00000115685;ENSG00000115687 UTR5 Human other chr2:242089049 chr2:242089049 . . 0 21 hm5C_associated_SNPs_131967 0 0 0 0 1 unknown 0 0.500231643921092 0.468257308006286 0.000463287842184856 hm5C_site_52025 DeepMRMD:0.468257308006286;iRNA_m5C:0.000463287842184856 52026 chr3 122514153 122514153 1 + C G LUSC 122514153 - 122514133 122514173 41 CCGGGACCCGGGACCGCCGCGGGCAGCGCCGCCGCCGCCGC CCGGGACCCGGGACCGCCGCCGGCAGCGCCGCCGCCGCCGC Direct Gain 0 0.942454899499697 0 0.938336491584778 prediction 0.884909798999394 Functional Gain - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122514153 chr3:122514153 synonymous SNV . 0 21 hm5C_associated_SNPs_131968 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921093 0.876672983169556 0.000463287842186633 hm5C_site_52026 DeepMRMD:0.876672983169556;iRNA_m5C:0.000463287842186633 52027 chr3 195869737 195869737 1 + A C rs539530000 195869737 + 195869717 195869757 41 CATGATCATGCCTGGAGAACAGGGATGGACAGTCCCGCTTC CATGATCATGCCTGGAGAACCGGGATGGACAGTCCCGCTTC Direct Gain 0 0.942444170632467 0 0.929962992668152 prediction 0.884888341264934 Functional Gain - LINC00885 ENSG00000224652 ncRNA_exonic Human lincRNA chr3:195869737 chr3:195869737 . . 0 21 hm5C_associated_SNPs_131969 0 0 0 1 0 unknown 0 0.500231806621492 0.859925985336304 0.000463613242983829 hm5C_site_52027 DeepMRMD:0.859925985336304;iRNA_m5C:0.000463613242983829 52028 chr16 816799 816799 1 + C G UCEC 816799 - 816779 816819 41 GGGACTCACCAGATGCTGCTGGGGGGCACGGAGCTCAGCTC GGGACTCACCAGATGCTGCTCGGGGGCACGGAGCTCAGCTC Direct Gain 0 0.942429524420609 0 0.968004584312439 prediction 0.884859048841217 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:816799 chr16:816799 synonymous SNV . 0 21 hm5C_associated_SNPs_131970 0 0 0 0 0 nucleus 0 0.500231643921093 0.936009168624878 0.0004632878421853 hm5C_site_52028 DeepMRMD:0.936009168624878;iRNA_m5C:0.0004632878421853 52029 chr16 71660545 71660545 1 + C G rs201373593 71660545 - 71660525 71660565 41 TCTGCGGCTGCGGCGGCTCCGGGGCTTCCCAGGGCGCGGGC TCTGCGGCTGCGGCGGCTCCCGGGCTTCCCAGGGCGCGGGC Direct Gain 0 0.942416222181718 0 0.982998192310333 prediction 0.884832444363436 Functional Gain - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71660545 chr16:71660545 nonsynonymous SNV 0.019 1 21 hm5C_associated_SNPs_131971 0 0 0 0 0 Ribosome 0 0.500231643921092 0.965996384620666 0.000463287842184856 hm5C_site_52029 DeepMRMD:0.965996384620666;iRNA_m5C:0.000463287842184856 52030 chr2 105472070 105472070 1 + T C rs547848317 105472070 + 105472050 105472090 41 GGGGCTGGCGGCGGCGGGGGTGGCGGCGGCGGCGGCGGCGG GGGGCTGGCGGCGGCGGGGGCGGCGGCGGCGGCGGCGGCGG Direct Gain 0 0.942411712542721 0 0.935182213783264 prediction 0.884823425085442 Functional Gain - POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472070 chr2:105472070 synonymous SNV . 0 21 hm5C_associated_SNPs_131972 0 0 0 0 0 exosome 0 0.500231643921093 0.870364427566528 0.000463287842185078 hm5C_site_52030 DeepMRMD:0.870364427566528;iRNA_m5C:0.000463287842185078 52031 chr15 81294193 81294193 1 + C G rs561401831 81294193 - 81294173 81294213 41 CGGAGCGGGGAGGGCGGGACGGGGAAGCTGGGAGTTGTCCT CGGAGCGGGGAGGGCGGGACCGGGAAGCTGGGAGTTGTCCT Direct Gain 0 0.942402075202946 0 0.909432172775269 prediction 0.884804150405892 Functional Gain - TLNRD1 ENSG00000140406 UTR5 Human protein_coding chr15:81294193 chr15:81294193 . . 0 21 hm5C_associated_SNPs_131973 0 0 0 0 0 unknown 0 0.500231643717453 0.818864345550538 0.000463287434905313 hm5C_site_52031 DeepMRMD:0.818864345550538;iRNA_m5C:0.000463287434905313 52032 chr5 76326698 76326698 1 + T C LUAD 76326698 + 76326678 76326718 41 GGAGAAGTTGGAACGTGAACTGCGGAGCTGCAAGCGGCAGG GGAGAAGTTGGAACGTGAACCGCGGAGCTGCAAGCGGCAGG Direct Gain 0 0.942393740733096 0 0.750417232513428 prediction 0.884787481466192 Functional Gain - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76326698 chr5:76326698 nonsynonymous SNV 0.993 4 21 hm5C_associated_SNPs_131974 0 0 1 0 0 Ribosome 0 0.500231644085102 0.500834465026856 0.000463288170203802 hm5C_site_52032 DeepMRMD:0.500834465026856;iRNA_m5C:0.000463288170203802 52033 chr10 91098946 91098946 1 + T C HNSC 91098946 + 91098926 91098966 41 TTCTCCTCTGGACTGGCAATTGCGATGTACCATCTGGATAA TTCTCCTCTGGACTGGCAATCGCGATGTACCATCTGGATAA Direct Gain 0 0.94237505458272 0 0.790270805358887 prediction 0.88475010916544 Functional Gain - IFIT3 ENSG00000119917 CDS Human protein_coding chr10:91098946 chr10:91098946 synonymous SNV . 0 21 hm5C_associated_SNPs_131975 0 0 0 0 0 exosome 0 0.500231842353923 0.580541610717774 0.000463684707846967 hm5C_site_52033 DeepMRMD:0.580541610717774;iRNA_m5C:0.000463684707846967 52034 chr19 9271897 9271897 1 + G C LUSC 9271897 + 9271877 9271917 41 CGCACATGCGAAGCCACACGGGGGAGAAACCGTACGAATGC CGCACATGCGAAGCCACACGCGGGAGAAACCGTACGAATGC Direct Gain 0 0.942354117435925 0 0.909289717674255 prediction 0.88470823487185 Functional Gain - ZNF317 ENSG00000130803 CDS Human protein_coding chr19:9271897 chr19:9271897 nonsynonymous SNV 0.791 4 21 hm5C_associated_SNPs_131976 0 0 1 0 0 Nucleus 0 0.500231600782531 0.81857943534851 0.000463201565061189 hm5C_site_52034 DeepMRMD:0.81857943534851;iRNA_m5C:0.000463201565061189 52035 chr7 128138132 128138132 1 + T C UCEC 128138132 + 128138112 128138152 41 CTGAGCAGGCTTCTGAAACCTGGGGGGATGGTACTTCTGCG CTGAGCAGGCTTCTGAAACCCGGGGGGATGGTACTTCTGCG Direct Gain 0 0.94234045543731 0 0.928220748901367 prediction 0.88468091087462 Functional Gain - METTL2B ENSG00000165055 CDS Human protein_coding chr7:128138132 chr7:128138132 synonymous SNV . 0 21 hm5C_associated_SNPs_131977 0 0 1 0 2 Ribosome 0 0.500231643921092 0.856441497802734 0.000463287842184856 hm5C_site_52035 DeepMRMD:0.856441497802734;iRNA_m5C:0.000463287842184856 52036 chr20 61167788 61167788 1 + G C LUSC 61167788 + 61167768 61167808 41 TGTGAAGGGCAACAGCTGACGGGGAAGTTCAGCACATCTGT TGTGAAGGGCAACAGCTGACCGGGAAGTTCAGCACATCTGT Direct Gain 0 0.942336003896587 0 0.930011630058289 prediction 0.884672007793173 Functional Gain - MIR1-1HG ENSG00000174407 CDS Human antisense chr20:61167788 chr20:61167788 synonymous SNV . 0 21 hm5C_associated_SNPs_131978 0 0 0 0 0 unknown 0 0.500231088735123 0.860023260116578 0.000462177470245351 hm5C_site_52036 DeepMRMD:0.860023260116578;iRNA_m5C:0.000462177470245351 52037 chr7 69063912 69063912 1 + A G rs575948411 69063912 - 69063892 69063932 41 AGCGGAAGAGAGGGCGAAACTGCGAGCGGCGGAGGAGAAGG AGCGGAAGAGAGGGCGAAACCGCGAGCGGCGGAGGAGAAGG Direct Gain 0 0.942329199077407 0 0.932990729808807 prediction 0.884658398154814 Functional Gain - AUTS2 ENSG00000158321 UTR5 Human protein_coding chr7:69063912 chr7:69063912 . . 0 21 hm5C_associated_SNPs_131979 0 0 0 0 0 Nucleus 0 0.500230860593711 0.865981459617614 0.000461721187421382 hm5C_site_52037 DeepMRMD:0.865981459617614;iRNA_m5C:0.000461721187421382 52038 chr16 70694505 70694505 1 + G C rs551859819 70694505 + 70694485 70694525 41 ACTGGGGAGCTGGGGGCAGAGGGCGGTGCCAAGTGCCACAT ACTGGGGAGCTGGGGGCAGACGGCGGTGCCAAGTGCCACAT Direct Gain 0 0.942328537110841 0 0.909291326999664 prediction 0.884657074221682 Functional Gain - IL34 ENSG00000157368 UTR3 Human protein_coding chr16:70694505 chr16:70694505 . . 0 21 hm5C_associated_SNPs_131980 0 0 0 0 0 exosome 0 0.500231643923311 0.818582653999328 0.000463287846621974 hm5C_site_52038 DeepMRMD:0.818582653999328;iRNA_m5C:0.000463287846621974 52039 chr19 2408461 2408461 1 + T G STAD 2408461 - 2408441 2408481 41 CGGCCGTGTCCGCGTTGTACAGGGGGTGCTTGACGATCTGG CGGCCGTGTCCGCGTTGTACCGGGGGTGCTTGACGATCTGG Direct Gain 0 0.942319646597915 0 0.932810604572296 prediction 0.88463929319583 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2408461 chr19:2408461 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_131981 0 0 0 0 0 chromatin 0 0.500231643497489 0.865621209144592 0.000463286994978551 hm5C_site_52039 DeepMRMD:0.865621209144592;iRNA_m5C:0.000463286994978551 52040 chr16 86613279 86613279 1 + A G rs548926439 86613279 - 86613259 86613299 41 GGTAAAAGCCGCCCTGGACATGCGGGTCGAGCATCAGGGAA GGTAAAAGCCGCCCTGGACACGCGGGTCGAGCATCAGGGAA Direct Gain 0 0.942319313410234 0 0.66178160905838 prediction 0.884638626820469 Functional Gain - FOXL1 ENSG00000176678 CDS Human protein_coding chr16:86613279 chr16:86613279 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_131982 0 0 0 0 0 exosome 0 0.500231643921092 0.32356321811676 0.000463287842184856 hm5C_site_52040 DeepMRMD:0.32356321811676;iRNA_m5C:0.000463287842184856 52041 chr12 48535153 48535153 1 + T C rs554664722 48535153 + 48535133 48535173 41 GGCCAAGGTGGCTCTAAACTTGGGACTAAAAGGTAAGTAGC GGCCAAGGTGGCTCTAAACTCGGGACTAAAAGGTAAGTAGC Direct Gain 0 0.942314212527739 0 0.94495415687561 prediction 0.884628425055479 Functional Gain - PFKM ENSG00000152556 CDS Human protein_coding chr12:48535153 chr12:48535153 synonymous SNV . 0 21 hm5C_associated_SNPs_131983 1 0 1 0 2 Nucleus 0 0.500231643921092 0.88990831375122 0.000463287842184856 hm5C_site_52041 DeepMRMD:0.88990831375122;iRNA_m5C:0.000463287842184856 not specified not specified 52042 chr6 13615767 13615767 1 + T C rs75029999 13615767 + 13615747 13615787 41 GAGGAAGGGGACGATGAGTTTGACGATGAGGCCCCGGAGGA GAGGAAGGGGACGATGAGTTCGACGATGAGGCCCCGGAGGA Direct Gain 0 0.942294711396038 0 0.713752329349518 prediction 0.884589422792076 Functional Gain - NOL7 ENSG00000225921 CDS Human protein_coding chr6:13615767 chr6:13615767 synonymous SNV . 0 21 hm5C_associated_SNPs_131984 0 0 1 0 1 Ribosome 0 0.500231643921095 0.427504658699036 0.000463287842189963 hm5C_site_52042 DeepMRMD:0.427504658699036;iRNA_m5C:0.000463287842189963 52043 chr22 47073776 47073776 1 + A C rs7286826 47073776 + 47073756 47073796 41 CACTCGCTCCACGGGAACAGAGAGGGTGAGAAGGGCCCACC CACTCGCTCCACGGGAACAGCGAGGGTGAGAAGGGCCCACC Direct Gain 0 0.942281583089161 0 0.818445801734924 prediction 0.884563166178322 Functional Gain - GRAMD4 ENSG00000075240 UTR3 Human protein_coding chr22:47073776 chr22:47073776 . . 0 21 hm5C_associated_SNPs_131985 0 0 0 0 0 Ribosome 0 0.50022421171978 0.636891603469848 0.000448423439560086 hm5C_site_52043 DeepMRMD:0.636891603469848;iRNA_m5C:0.000448423439560086 52044 chr16 81944312 81944312 1 + C G BLCA 81944312 - 81944292 81944332 41 CACGTACGGCTTGGACTCGTGGGGGTTGGGGTTGGGCACAG CACGTACGGCTTGGACTCGTCGGGGTTGGGGTTGGGCACAG Direct Gain 0 0.942280730578914 0 0.960102319717407 prediction 0.884561461157828 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81944312 chr16:81944312 nonsynonymous SNV 0.994 5 21 hm5C_associated_SNPs_131986 0 0 0 0 0 Cytosol 0 0.500231643921092 0.920204639434814 0.000463287842184856 hm5C_site_52044 DeepMRMD:0.920204639434814;iRNA_m5C:0.000463287842184856 52045 chr10 116853177 116853177 1 + C G rs2484265 116853177 - 116853157 116853197 41 TCCTGAGGGGACCTGACCGGGAGGAGGAGGGGACCCCGCGC TCCTGAGGGGACCTGACCGGCAGGAGGAGGGGACCCCGCGC Direct Gain 0 0.942268083664804 0 0.944661259651184 prediction 0.884536167329609 Functional Gain - ATRNL1 ENSG00000107518 UTR5 Human protein_coding chr10:116853177 chr10:116853177 . . 0 21 hm5C_associated_SNPs_131987 0 0 0 0 0 exosome 0 0.500231643904455 0.889322519302368 0.00046328780891014 hm5C_site_52045 DeepMRMD:0.889322519302368;iRNA_m5C:0.00046328780891014 52046 chr7 26331539 26331539 1 + A G rs560593863 26331539 - 26331519 26331559 41 CCCCGCGCTCCCCGCGCACGTAGCGGCCCCGCGCCCGCGCT CCCCGCGCTCCCCGCGCACGCAGCGGCCCCGCGCCCGCGCT Direct Gain 0 0.942252310718066 0 0.759891092777252 prediction 0.884504621436131 Functional Gain - SNX10 ENSG00000086300 upstream Human protein_coding chr7:26331539 chr7:26331539 . . 0 21 hm5C_associated_SNPs_131988 0 0 0 0 0 membrane 0 0.500231598315041 0.519782185554504 0.000463196630082985 hm5C_site_52046 DeepMRMD:0.519782185554504;iRNA_m5C:0.000463196630082985 52047 chr11 1270947 1270947 1 + C G rs180674978 1270947 - 1270927 1270967 41 GCCGGGCTGGTCAGCACTTTGGGAGGGGGAGCTGTTCCCGG GCCGGGCTGGTCAGCACTTTCGGAGGGGGAGCTGTTCCCGG Direct Gain 0 0.942251253090244 0 0.969023525714874 prediction 0.884502506180489 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1270947 chr11:1270947 synonymous SNV . 0 21 hm5C_associated_SNPs_131989 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.938047051429748 0.000463287842184856 hm5C_site_52047 DeepMRMD:0.938047051429748;iRNA_m5C:0.000463287842184856 52048 chr3 137483941 137483941 1 + C G HNSC 137483941 - 137483921 137483961 41 ACGGGCAGGCCAGCCGCCTTGAGCGGGTCCGTGTCGCCCAG ACGGGCAGGCCAGCCGCCTTCAGCGGGTCCGTGTCGCCCAG Direct Gain 0 0.942226563761065 0 0.844518840312958 prediction 0.884453127522129 Functional Gain - SOX14 ENSG00000168875 CDS Human protein_coding chr3:137483941 chr3:137483941 synonymous SNV . 0 21 hm5C_associated_SNPs_131990 0 0 0 0 0 exosome 0 0.500231643921092 0.689037680625916 0.000463287842184856 hm5C_site_52048 DeepMRMD:0.689037680625916;iRNA_m5C:0.000463287842184856 52049 chr19 49979006 49979006 1 + C G CESC 49979006 - 49978986 49979026 41 AGATGGGGCTGTGTTGGAAGGAGCAGTCCTGGGTCCCACTG AGATGGGGCTGTGTTGGAAGCAGCAGTCCTGGGTCCCACTG Direct Gain 0 0.942214618892427 0 0.77656477689743 prediction 0.884429237784854 Functional Gain - FLT3LG ENSG00000090554 CDS Human protein_coding chr19:49979006 chr19:49979006 nonsynonymous SNV 0.404 1 21 hm5C_associated_SNPs_131991 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643930861 0.55312955379486 0.000463287861721007 hm5C_site_52049 DeepMRMD:0.55312955379486;iRNA_m5C:0.000463287861721007 52050 chr16 1836584 1836584 1 + A G STAD 1836584 - 1836564 1836604 41 TTCCCAACGCCCCCCTTTCCTGAGAGGACCAGGATGATGTG TTCCCAACGCCCCCCTTTCCCGAGAGGACCAGGATGATGTG Direct Gain 0 0.942155440044394 0 0.838306546211243 prediction 0.884310880088787 Functional Gain - NUBP2 ENSG00000095906 CDS Human protein_coding chr16:1836584 chr16:1836584 synonymous SNV . 0 21 hm5C_associated_SNPs_131992 0 0 0 0 0 Ribosome 0 0.50023164386937 0.676613092422486 0.000463287738740492 hm5C_site_52050 DeepMRMD:0.676613092422486;iRNA_m5C:0.000463287738740492 52051 chr8 1649551 1649551 1 + C G rs35716530 1649551 - 1649531 1649571 41 CAGAGCCGGGTCTGGGCCTCGGGGATGTAGATCTCGATGCT CAGAGCCGGGTCTGGGCCTCCGGGATGTAGATCTCGATGCT Direct Gain 0 0.942155062098283 0 0.884365081787109 prediction 0.884310124196567 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1649551 chr8:1649551 synonymous SNV . 0 21 hm5C_associated_SNPs_131993 0 0 0 0 0 nucleolus 0 0.500231642632072 0.768730163574218 0.000463285264144186 hm5C_site_52051 DeepMRMD:0.768730163574218;iRNA_m5C:0.000463285264144186 52052 chr3 43095101 43095101 1 + A G rs536119 43095101 - 43095081 43095121 41 GCCGCAGCTCGGCTGGGTTCTGGCATTTCTCTCGGAGCCTC GCCGCAGCTCGGCTGGGTTCCGGCATTTCTCTCGGAGCCTC Direct Gain 0 0.942153586749096 0 0.883406043052673 prediction 0.884307173498192 Functional Gain - FAM198A ENSG00000144649 CDS Human protein_coding chr3:43095101 chr3:43095101 nonsynonymous SNV 0.958 0 21 hm5C_associated_SNPs_131994 0 0 0 0 0 exosome 0 0.500231643921093 0.766812086105346 0.000463287842185078 hm5C_site_52052 DeepMRMD:0.766812086105346;iRNA_m5C:0.000463287842185078 52053 chr3 44775962 44775962 1 + A C rs4682752 44775962 + 44775942 44775982 41 TGAAACATGGGAGAGTTAACATGCAGAAGAAACCTTCAAAG TGAAACATGGGAGAGTTAACCTGCAGAAGAAACCTTCAAAG Direct Gain 0 0.942152264089636 0 0.75494658946991 prediction 0.884304528179271 Functional Gain - ZNF501 ENSG00000186446 CDS Human protein_coding chr3:44775962 chr3:44775962 nonsynonymous SNV 0.267 1 21 hm5C_associated_SNPs_131995 0 0 0 0 0 Nucleus 0 0.500231661408575 0.50989317893982 0.000463322817150891 hm5C_site_52053 DeepMRMD:0.50989317893982;iRNA_m5C:0.000463322817150891 52054 chr9 990677 990677 1 + A G COAD 990677 - 990657 990697 41 TCAGCGGGTACCGGGGTGGCTGGGGGAAAGGGGGCTGCAGA TCAGCGGGTACCGGGGTGGCCGGGGGAAAGGGGGCTGCAGA Direct Gain 0 0.942147346788319 0 0.932476460933685 prediction 0.884294693576637 Functional Gain - DMRT3 ENSG00000064218 CDS Human protein_coding chr9:990677 chr9:990677 nonsynonymous SNV 0.972 2 21 hm5C_associated_SNPs_131996 0 0 0 0 0 unknown 0 0.500231643921092 0.86495292186737 0.000463287842184856 hm5C_site_52054 DeepMRMD:0.86495292186737;iRNA_m5C:0.000463287842184856 52055 chr2 20647414 20647414 1 + A C SKCM 20647414 + 20647394 20647434 41 GCTGTGGGACACGGCGGGCCAGGAGGACTACGACCGCCTGC GCTGTGGGACACGGCGGGCCCGGAGGACTACGACCGCCTGC Direct Gain 0 0.942141866142619 0 0.898310959339142 prediction 0.884283732285237 Functional Gain - RHOB ENSG00000143878 CDS Human protein_coding chr2:20647414 chr2:20647414 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_131997 0 0 1 0 0 Cytosol 0 0.498543369057592 0.796621918678284 0 hm5C_site_52055 DeepMRMD:0.796621918678284;iRNA_m5C:0 52056 chr2 10924524 10924524 1 + T C rs1198873 10924524 + 10924504 10924544 41 AAGGTCAACATCTCATTTTATGGAAGAGCGACTCTCTGGAG AAGGTCAACATCTCATTTTACGGAAGAGCGACTCTCTGGAG Direct Gain 0 0.942137287158625 0 0.836017966270447 prediction 0.884274574317249 Functional Gain - ATP6V1C2 ENSG00000143882 UTR3 Human protein_coding chr2:10924524 chr2:10924524 . . 0 21 hm5C_associated_SNPs_131998 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.672035932540894 0.000463287842184856 hm5C_site_52056 DeepMRMD:0.672035932540894;iRNA_m5C:0.000463287842184856 52057 chr15 41853506 41853506 1 + C G BLCA 41853506 - 41853486 41853526 41 TCCCCCACAGGCCTGCACCTGAGGAAGCCGATCCAGTGCTG TCCCCCACAGGCCTGCACCTCAGGAAGCCGATCCAGTGCTG Direct Gain 0 0.942136227714528 0 0.890543818473816 prediction 0.884272455429055 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41853506 chr15:41853506 synonymous SNV . 0 21 hm5C_associated_SNPs_131999 0 0 0 0 0 Ribosome 0 0.500231644041387 0.781087636947632 0.00046328808277396 hm5C_site_52057 DeepMRMD:0.781087636947632;iRNA_m5C:0.00046328808277396 52058 chr7 106829851 106829851 1 + G C STAD 106829851 + 106829831 106829871 41 TAGAAGATGGTTTACTTACCGTAGAGTGTAAGCTGGACCAC TAGAAGATGGTTTACTTACCCTAGAGTGTAAGCTGGACCAC Direct Gain 0 0.942111524592546 0 0.747449815273285 prediction 0.884223049185091 Functional Gain - HBP1 ENSG00000105856 CDS Human protein_coding chr7:106829851 chr7:106829851 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_132000 0 0 1 0 1 Ribosome 0 0.500231643921672 0.49489963054657 0.000463287843343707 hm5C_site_52058 DeepMRMD:0.49489963054657;iRNA_m5C:0.000463287843343707 52059 chr11 55872565 55872565 1 + T C COAD 55872565 + 55872545 55872585 41 TGTGGCTGACTTCATCCTTATGGGACTGACACTTTCTGAAG TGTGGCTGACTTCATCCTTACGGGACTGACACTTTCTGAAG Direct Gain 0 0.942087546020601 0 0.86277848482132 prediction 0.884175092041202 Functional Gain - OR8H2 ENSG00000181767 CDS Human protein_coding chr11:55872565 chr11:55872565 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_132001 0 0 0 0 0 unknown 0 0.500231643921114 0.72555696964264 0.000463287842228599 hm5C_site_52059 DeepMRMD:0.72555696964264;iRNA_m5C:0.000463287842228599 52060 chr19 48255839 48255839 1 + A G UCEC 48255839 - 48255819 48255859 41 GGTCTTCAAAGGATGGATTGTAGGAAGCTCCGGCAGGCGCC GGTCTTCAAAGGATGGATTGCAGGAAGCTCCGGCAGGCGCC Direct Gain 0 0.942078929028446 0 0.86783242225647 prediction 0.884157858056892 Functional Gain - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48255839 chr19:48255839 nonsynonymous SNV 0.696 5 21 hm5C_associated_SNPs_132002 0 0 0 0 0 unknown 0 0.500231646578724 0.73566484451294 0.000463293157447975 hm5C_site_52060 DeepMRMD:0.73566484451294;iRNA_m5C:0.000463293157447975 52061 chr22 44603357 44603357 1 + T C rs13057947 44603357 + 44603337 44603377 41 GTGGGGAGGAGTGGGACTTGTGGGGAGGAGTGGGACTTGTG GTGGGGAGGAGTGGGACTTGCGGGGAGGAGTGGGACTTGTG Direct Gain 0 0.942067233005481 0 0.898540735244751 prediction 0.884134466010962 Functional Gain - PARVG ENSG00000138964 UTR3 Human protein_coding chr22:44603357 chr22:44603357 . . 0 21 hm5C_associated_SNPs_132003 0 0 0 0 0 exosome 0 0.500231643921091 0.797081470489502 0.000463287842181748 hm5C_site_52061 DeepMRMD:0.797081470489502;iRNA_m5C:0.000463287842181748 52062 chr11 73676004 73676004 1 + A G rs200005644 73676004 - 73675984 73676024 41 GGTAGAGATCCCGTTCGACTTGGGGGTCCTGCTTCTTGACC GGTAGAGATCCCGTTCGACTCGGGGGTCCTGCTTCTTGACC Direct Gain 0 0.942056172973202 0 0.928414702415466 prediction 0.884112345946404 Functional Gain - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73676004 chr11:73676004 nonsynonymous SNV 0.985 3 21 hm5C_associated_SNPs_132004 0 0 0 0 0 exosome 0 0.500231643921092 0.856829404830932 0.000463287842184856 hm5C_site_52062 DeepMRMD:0.856829404830932;iRNA_m5C:0.000463287842184856 52063 chr1 63284872 63284872 1 + T C UCEC 63284872 + 63284852 63284892 41 ATGCGAAATGAAGTTTATCATAGGAAAATCATCTCTTGGTT ATGCGAAATGAAGTTTATCACAGGAAAATCATCTCTTGGTT Direct Gain 0 0.942045582357125 0 0.802321195602417 prediction 0.884091164714251 Functional Gain - ATG4C ENSG00000125703 CDS Human protein_coding chr1:63284872 chr1:63284872 synonymous SNV . 0 21 hm5C_associated_SNPs_132005 0 0 1 0 0 Ribosome 0 0.500231644059188 0.604642391204834 0.000463288118376814 hm5C_site_52063 DeepMRMD:0.604642391204834;iRNA_m5C:0.000463288118376814 52064 chr16 84699709 84699709 1 + G C rs16974380 84699709 + 84699689 84699729 41 GGATAAATGCCTGGAGTATAGGGCAGCGCCACGGGCACTTG GGATAAATGCCTGGAGTATACGGCAGCGCCACGGGCACTTG Direct Gain 0 0.942038721539345 0 0.724885165691376 prediction 0.88407744307869 Functional Gain - KLHL36 ENSG00000135686;ENSG00000103194 intergenic Human other chr16:84699709 chr16:84699709 . . 0 21 hm5C_associated_SNPs_132006 0 0 1 0 0 chromatin 0 0.500231643921092 0.449770331382752 0.000463287842184856 hm5C_site_52064 DeepMRMD:0.449770331382752;iRNA_m5C:0.000463287842184856 52065 chr1 152636819 152636819 1 + C G STAD 152636819 - 152636799 152636839 41 GTGCCGGCGCCGGTGGAAGAGACGGGGCCTGTGGTGGCTCA GTGCCGGCGCCGGTGGAAGACACGGGGCCTGTGGTGGCTCA Direct Gain 0 0.942037250164085 0 0.833274483680725 prediction 0.88407450032817 Functional Gain - LCE2D ENSG00000187223 CDS Human protein_coding chr1:152636819 chr1:152636819 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_132007 0 0 0 0 0 unknown 0 0.500231643921092 0.66654896736145 0.000463287842184856 hm5C_site_52065 DeepMRMD:0.66654896736145;iRNA_m5C:0.000463287842184856 52066 chr18 51813729 51813729 1 + T C STAD 51813729 + 51813709 51813749 41 TCTGAGAAGCACTATGGTCGTGAGAGTCGTCAGTGCCCTAT TCTGAGAAGCACTATGGTCGCGAGAGTCGTCAGTGCCCTAT Direct Gain 0 0.942037059231821 0 0.843798041343689 prediction 0.884074118463641 Functional Gain - POLI ENSG00000101751 CDS Human protein_coding chr18:51813729 chr18:51813729 synonymous SNV . 0 21 hm5C_associated_SNPs_132008 0 0 1 0 1 Nucleus 0 0.500232574841412 0.687596082687378 0.000465149682824739 hm5C_site_52066 DeepMRMD:0.687596082687378;iRNA_m5C:0.000465149682824739 52067 chrX 9859098 9859098 1 + A G rs6640543 9859098 - 9859078 9859118 41 CAGCCGCTGGTGGAGGTGAATGGGGAGGCCGCTAGCTCGGG CAGCCGCTGGTGGAGGTGAACGGGGAGGCCGCTAGCTCGGG Direct Gain 0 0.942033273820713 0 0.965336918830872 prediction 0.884066547641425 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9859098 chrX:9859098 synonymous SNV . 0 21 hm5C_associated_SNPs_132009 0 0 0 0 0 cytosol 0 0.500231643921185 0.930673837661744 0.000463287842370264 hm5C_site_52067 DeepMRMD:0.930673837661744;iRNA_m5C:0.000463287842370264 52068 chr3 8590359 8590359 1 + G C UCEC 8590359 + 8590339 8590379 41 TGCACCAGCTCCCCATCTATGACCAGGATCCCTCGCGCTGC TGCACCAGCTCCCCATCTATCACCAGGATCCCTCGCGCTGC Direct Gain 0 0.942029770115098 0 0.744919061660767 prediction 0.884059540230196 Functional Gain - LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8590359 chr3:8590359 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_132010 0 0 1 0 0 exosome 0 0.50023164392085 0.489838123321534 0.000463287841699245 hm5C_site_52068 DeepMRMD:0.489838123321534;iRNA_m5C:0.000463287841699245 52069 chrX 151909177 151909177 1 + A C SKCM 151909177 + 151909157 151909197 41 AAGGGAAAAGGGACCCGTCAAGGAAGTTCCAGGAACAAAAG AAGGGAAAAGGGACCCGTCACGGAAGTTCCAGGAACAAAAG Direct Gain 0 0.942006219513958 0 0.499658405780792 prediction 0.884012439027917 Functional Gain - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151909177 chrX:151909177 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_132011 0 0 0 0 1 Ribosome 0 0.500231643921195 0 0.000463287842389359 hm5C_site_52069 DeepMRMD:0;iRNA_m5C:0.000463287842389359 52070 chr6 14131769 14131769 1 + G C ACC 14131769 + 14131749 14131789 41 AGTTATTGGAGGGTGGTGAAGAGAGGATGGAGACACCCCAG AGTTATTGGAGGGTGGTGAACAGAGGATGGAGACACCCCAG Direct Gain 0 0.941987505653118 0 0.929036498069763 prediction 0.883975011306236 Functional Gain - CD83 ENSG00000112149 CDS Human protein_coding chr6:14131769 chr6:14131769 nonsynonymous SNV 0.107 1 21 hm5C_associated_SNPs_132012 0 0 0 0 1 exosome 0 0.500231643921092 0.858072996139526 0.000463287842184856 hm5C_site_52070 DeepMRMD:0.858072996139526;iRNA_m5C:0.000463287842184856 52071 chr20 42159056 42159056 1 + A G LUAD 42159056 - 42159036 42159076 41 ACCCAGCTAGGCCTTACCTTTGGGAGGCTGCAGCTTGTGGC ACCCAGCTAGGCCTTACCTTCGGGAGGCTGCAGCTTGTGGC Direct Gain 0 0.941986290717514 0 0.947534561157227 prediction 0.883972581435028 Functional Gain - L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42159056 chr20:42159056 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_132013 0 0 0 0 0 Nucleus 0 0.500231643921092 0.895069122314454 0.000463287842184856 hm5C_site_52071 DeepMRMD:0.895069122314454;iRNA_m5C:0.000463287842184856 52072 chr7 149430617 149430617 1 + A G rs150544622 149430617 - 149430597 149430637 41 TGAGCCCAGCGAGGTCCCCGTGGGAGGGTCCACATCCAGGA TGAGCCCAGCGAGGTCCCCGCGGGAGGGTCCACATCCAGGA Direct Gain 0 0.941982063560696 0 0.814207315444946 prediction 0.883964127121393 Functional Gain - KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149430617 chr7:149430617 synonymous SNV . 0 21 hm5C_associated_SNPs_132014 0 0 0 0 0 Cytosol 0 0.500233115053759 0.628414630889892 0.000466230107517562 hm5C_site_52072 DeepMRMD:0.628414630889892;iRNA_m5C:0.000466230107517562 52073 chr8 18067395 18067395 1 + T C rs7845127 18067395 + 18067375 18067415 41 AGCAGGAACCAGGTGAAATATAAGAGCACAGTCCTCCCAGC AGCAGGAACCAGGTGAAATACAAGAGCACAGTCCTCCCAGC Direct Gain 0 0.941973104175749 0 0.861998081207275 prediction 0.883946208351497 Functional Gain - NAT1 ENSG00000171428 UTR5 Human protein_coding chr8:18067395 chr8:18067395 . . 0 21 hm5C_associated_SNPs_132015 0 1 0 0 1 Cytosol 0 0.500231640066894 0.72399616241455 0.000463280133788491 hm5C_site_52073 DeepMRMD:0.72399616241455;iRNA_m5C:0.000463280133788491 52074 chr22 24583646 24583646 1 + A G UCEC 24583646 - 24583626 24583666 41 GGGGTTGAGGGTGGTCTCACTGGGGAAGAGGGGCTCGAAGG GGGGTTGAGGGTGGTCTCACCGGGGAAGAGGGGCTCGAAGG Direct Gain 0 0.941970328439983 0 0.944779336452484 prediction 0.883940656879967 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24583646 chr22:24583646 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_132016 0 0 0 0 0 Exosome 0 0.500231643921093 0.889558672904968 0.000463287842185078 hm5C_site_52074 DeepMRMD:0.889558672904968;iRNA_m5C:0.000463287842185078 52075 chrX 102942348 102942348 1 + G C rs183588287 102942348 + 102942328 102942368 41 CGTGGTGCTGGGGTTGCTGTGTGAGCGGCCCTCGTGGCTCG CGTGGTGCTGGGGTTGCTGTCTGAGCGGCCCTCGTGGCTCG Direct Gain 0 0.941955409621086 0 0.903739929199219 prediction 0.883910819242172 Functional Gain - MORF4L2-AS1 ENSG00000231154 ncRNA_exonic Human antisense chrX:102942348 chrX:102942348 . . 0 21 hm5C_associated_SNPs_132017 0 0 1 0 1 unknown 0 0.500236838794738 0.807479858398438 0.000473677589476029 hm5C_site_52075 DeepMRMD:0.807479858398438;iRNA_m5C:0.000473677589476029 52076 chr7 150028987 150028987 1 + T C rs28549705 150028987 + 150028967 150029007 41 CCCCCACACACCAGTCTTTTTGGGGGTTTCAGAGTGGCCGG CCCCCACACACCAGTCTTTTCGGGGGTTTCAGAGTGGCCGG Direct Gain 0 0.941911454581185 0 0.924983739852905 prediction 0.88382290916237 Functional Gain - ZBED6CL ENSG00000188707 UTR3 Human protein_coding chr7:150028987 chr7:150028987 . . 0 21 hm5C_associated_SNPs_132018 0 0 0 0 0 chromatin 0 0.50023164392382 0.84996747970581 0.00046328784764027 hm5C_site_52076 DeepMRMD:0.84996747970581;iRNA_m5C:0.00046328784764027 52077 chr6 96034700 96034700 1 + G C BLCA 96034700 + 96034680 96034720 41 ATTGGAATCATCCAGTGTTAGAGCATTGGGACCCTAGAATA ATTGGAATCATCCAGTGTTACAGCATTGGGACCCTAGAATA Direct Gain 0 0.941910336714212 0 0.441412806510925 prediction 0.883820673428425 Functional Gain - MANEA ENSG00000172469 CDS Human protein_coding chr6:96034700 chr6:96034700 nonsynonymous SNV 0.975 1 21 hm5C_associated_SNPs_132019 0 0 1 0 0 Ribosome 0 0.500231643921092 0 0.000463287842184856 hm5C_site_52077 DeepMRMD:0;iRNA_m5C:0.000463287842184856 52078 chr1 244218367 244218367 1 + A G UCEC 244218367 - 244218347 244218387 41 GTGGCGCTTGAGGGTGTACATGCAAGAGAAAGTCTTCCCAC GTGGCGCTTGAGGGTGTACACGCAAGAGAAAGTCTTCCCAC Direct Gain 0 0.94190368947687 0 0.805721998214722 prediction 0.883807378953739 Functional Gain - ZBTB18 ENSG00000179456 CDS Human protein_coding chr1:244218367 chr1:244218367 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_132020 0 0 0 0 0 Cytosol 0 0.500231643921092 0.611443996429444 0.000463287842183746 hm5C_site_52078 DeepMRMD:0.611443996429444;iRNA_m5C:0.000463287842183746 52079 chr11 65088498 65088498 1 + T C rs4149835 65088498 + 65088478 65088518 41 TTCCGCCACACCATTCATATTGGCAGTGGCGGCGGCAGTGA TTCCGCCACACCATTCATATCGGCAGTGGCGGCGGCAGTGA Direct Gain 0 0.941877860302347 0 0.861863434314728 prediction 0.883755720604694 Functional Gain - CDC42EP2 ENSG00000149798 CDS Human protein_coding chr11:65088498 chr11:65088498 synonymous SNV . 0 21 hm5C_associated_SNPs_132021 0 0 1 0 0 Cytosol 0 0.500231648040231 0.723726868629456 0.00046329608046225 hm5C_site_52079 DeepMRMD:0.723726868629456;iRNA_m5C:0.00046329608046225 52080 chr20 37214707 37214707 1 + T C UCEC 37214707 + 37214687 37214727 41 ACTCCAGTGTGTGCTTGGATTGGGAGCCCTGGAGCAAAGGC ACTCCAGTGTGTGCTTGGATCGGGAGCCCTGGAGCAAAGGC Direct Gain 0 0.941868389975085 0 0.926644146442413 prediction 0.88373677995017 Functional Gain - ADIG ENSG00000182035 CDS Human protein_coding chr20:37214707 chr20:37214707 nonsynonymous SNV 0.919 2 21 hm5C_associated_SNPs_132022 0 0 1 0 1 nucleolus 0 0.500231643921088 0.853288292884826 0.000463287842176863 hm5C_site_52080 DeepMRMD:0.853288292884826;iRNA_m5C:0.000463287842176863 52081 chr1 32740491 32740491 1 + A G UCEC 32740491 - 32740471 32740511 41 AAGACCGGGGAGAAAGTAGGTGGGGGAGAGGTGGAAGCCAA AAGACCGGGGAGAAAGTAGGCGGGGGAGAGGTGGAAGCCAA Direct Gain 0 0.941858029807434 0 0.951763451099396 prediction 0.883716059614867 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32740491 chr1:32740491 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_132023 0 0 0 0 0 Cytosol 0 0.500231643921092 0.903526902198792 0.000463287842184856 hm5C_site_52081 DeepMRMD:0.903526902198792;iRNA_m5C:0.000463287842184856 52082 chr11 67021830 67021830 1 + A G UCEC 67021830 - 67021810 67021850 41 ACCCGACAGCAGTGAGTAGATTGGAGGACTGATCTGTAAGG ACCCGACAGCAGTGAGTAGACTGGAGGACTGATCTGTAAGG Direct Gain 0 0.941843986314408 0 0.518153131008148 prediction 0.883687972628817 Functional Gain - KDM2A ENSG00000173120 CDS Human protein_coding chr11:67021830 chr11:67021830 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_132024 0 0 0 0 0 Cytosol 0 0.500231643921096 0.0363062620162959 0.00046328784219174 hm5C_site_52082 DeepMRMD:0.0363062620162959;iRNA_m5C:0.00046328784219174 52083 chr2 113821653 113821653 1 + T C rs768627 113821653 + 113821633 113821673 41 GGACACAGAGACAGAGGAGATGCGGGGAAGACTATGTAAAG GGACACAGAGACAGAGGAGACGCGGGGAAGACTATGTAAAG Direct Gain 0 0.941838449366073 0 0.750057816505432 prediction 0.883676898732146 Functional Gain - IL36RN ENSG00000136695 UTR3 Human protein_coding chr2:113821653 chr2:113821653 . . 0 21 hm5C_associated_SNPs_132025 1 0 0 0 0 exosome 0 0.500231643974774 0.500115633010864 0.000463287949548752 hm5C_site_52083 DeepMRMD:0.500115633010864;iRNA_m5C:0.000463287949548752 Pustular psoriasis, generalized Pustular psoriasis, generalized 52084 chr20 51872438 51872438 1 + C G LUSC 51872438 - 51872418 51872458 41 GCTTCATGGGGGGGACCCTGGAGGAGGAGGCTGGCTTTGGG GCTTCATGGGGGGGACCCTGCAGGAGGAGGCTGGCTTTGGG Direct Gain 0 0.941821862630043 0 0.833470344543457 prediction 0.883643725260087 Functional Gain - TSHZ2 ENSG00000182463 CDS Human protein_coding chr20:51872438 chr20:51872438 nonsynonymous SNV 0.158 1 21 hm5C_associated_SNPs_132026 0 0 0 0 0 Cytoplasm 0 0.500231643921092 0.666940689086914 0.000463287842184856 hm5C_site_52084 DeepMRMD:0.666940689086914;iRNA_m5C:0.000463287842184856 52085 chr17 55752363 55752363 1 + C G BLCA 55752363 - 55752343 55752383 41 GTCCTGGGCTGTTGGCCCCCGGGAAGCCTCCGGGCCGCGCC GTCCTGGGCTGTTGGCCCCCCGGAAGCCTCCGGGCCGCGCC Direct Gain 0 0.941798585422528 0 0.90826952457428 prediction 0.883597170845057 Functional Gain - MSI2 ENSG00000153944 CDS Human protein_coding chr17:55752363 chr17:55752363 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_132027 0 0 0 0 0 Nucleus 0 0.500231643921092 0.81653904914856 0.000463287842184856 hm5C_site_52085 DeepMRMD:0.81653904914856;iRNA_m5C:0.000463287842184856 52086 chr2 232264629 232264629 1 + C G rs189606183 232264629 - 232264609 232264649 41 CGGTGGGGCAGGGCTCTGGAGGGGGCTGGGCTGTGAGGGGC CGGTGGGGCAGGGCTCTGGACGGGGCTGGGCTGTGAGGGGC Direct Gain 0 0.941797141740542 0 0.866860389709473 prediction 0.883594283481085 Functional Gain - B3GNT7 ENSG00000156966 UTR3 Human protein_coding chr2:232264629 chr2:232264629 . . 0 21 hm5C_associated_SNPs_132028 0 0 0 0 0 exosome 0 0.500231643921092 0.733720779418946 0.000463287842184856 hm5C_site_52086 DeepMRMD:0.733720779418946;iRNA_m5C:0.000463287842184856 52087 chr17 38519826 38519826 1 + T C LUSC 38519826 + 38519806 38519846 41 GCGCCGAGAGCAGCAGGATGTGGAAGAGCCAGAAGCGGTAG GCGCCGAGAGCAGCAGGATGCGGAAGAGCCAGAAGCGGTAG Direct Gain 0 0.941796714424101 0 0.887634932994843 prediction 0.883593428848202 Functional Gain - GJD3 ENSG00000183153;ENSG00000266208 CDS Human other chr17:38519826 chr17:38519826 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_132029 0 0 0 0 0 exosome 0 0.500232759586321 0.775269865989686 0.00046551917264126 hm5C_site_52087 DeepMRMD:0.775269865989686;iRNA_m5C:0.00046551917264126 52088 chr20 62187728 62187728 1 + G C OV 62187728 + 62187708 62187748 41 CCATCCAGCCAGCCACATCGGAGCAGTATGAGTTGCGCTTC CCATCCAGCCAGCCACATCGCAGCAGTATGAGTTGCGCTTC Direct Gain 0 0.941795052920562 0 0.355622529983521 prediction 0.883590105841123 Functional Gain - FNDC11 ENSG00000125531 CDS Human protein_coding chr20:62187728 chr20:62187728 nonsynonymous SNV 0.135 4 21 hm5C_associated_SNPs_132030 0 0 0 0 0 exosome 0 0.50023164383465 0 0.000463287669300705 hm5C_site_52088 DeepMRMD:0;iRNA_m5C:0.000463287669300705 52089 chr16 88779738 88779738 1 + C G rs531374262 88779738 - 88779718 88779758 41 TAGCCGTGGGCTCGGGCCATGTGGAGGATCAGGTGGGTCCT TAGCCGTGGGCTCGGGCCATCTGGAGGATCAGGTGGGTCCT Direct Gain 0 0.941778830439666 0 0.95896327495575 prediction 0.883557660879333 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779738 chr16:88779738 nonsynonymous SNV 0.040 3 21 hm5C_associated_SNPs_132031 0 0 1 0 0 Cytosol 0 0.500231643979161 0.9179265499115 0.000463287958321956 hm5C_site_52089 DeepMRMD:0.9179265499115;iRNA_m5C:0.000463287958321956 52090 chr12 108634241 108634241 1 + A G UCEC 108634241 - 108634221 108634261 41 ACTCAGCCATGAGGGCTTTGTAGGGGTTGCGGATGAGCAGG ACTCAGCCATGAGGGCTTTGCAGGGGTTGCGGATGAGCAGG Direct Gain 0 0.941773646804677 0 0.946496725082397 prediction 0.883547293609353 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108634241 chr12:108634241 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_132032 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643927539 0.892993450164794 0.000463287855078987 hm5C_site_52090 DeepMRMD:0.892993450164794;iRNA_m5C:0.000463287855078987 52091 chr8 41478629 41478629 1 + C G rs139650926 41478629 - 41478609 41478649 41 CCTGGGATCCAGAGCAGCCCGGGGAGCCCTGGAGTCTGGAA CCTGGGATCCAGAGCAGCCCCGGGAGCCCTGGAGTCTGGAA Direct Gain 0 0.941767684379044 0 0.813645958900452 prediction 0.883535368758088 Functional Gain - GPAT4 ENSG00000264578 ncRNA_exonic Human antisense chr8:41478629 chr8:41478629 . . 0 21 hm5C_associated_SNPs_132033 0 0 0 0 0 Ribosome 0 0.500231643921065 0.627291917800904 0.000463287842130011 hm5C_site_52091 DeepMRMD:0.627291917800904;iRNA_m5C:0.000463287842130011 52092 chr3 112993344 112993344 1 + A G rs139036160 112993344 - 112993324 112993364 41 GGAAGCAGGCCCCACTGACGTTGGGGGTCTGGGGAGCGCCG GGAAGCAGGCCCCACTGACGCTGGGGGTCTGGGGAGCGCCG Direct Gain 0 0.941764658571961 0 0.660331606864929 prediction 0.883529317143921 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112993344 chr3:112993344 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_132034 0 0 0 0 0 nucleoplasm 0 0.500231643930875 0.320663213729858 0.000463287861750317 hm5C_site_52092 DeepMRMD:0.320663213729858;iRNA_m5C:0.000463287861750317 52093 chr21 31965056 31965056 1 + T C UCEC 31965056 + 31965036 31965076 41 TCTGTGGCTGTGGCTATAGGTGCGGCTCTGGCTATGGCTCC TCTGTGGCTGTGGCTATAGGCGCGGCTCTGGCTATGGCTCC Direct Gain 0 0.94176267061875 0 0.794248104095459 prediction 0.8835253412375 Functional Gain - KRTAP6-3 ENSG00000212938 CDS Human protein_coding chr21:31965056 chr21:31965056 nonsynonymous SNV 0.003 1 21 hm5C_associated_SNPs_132035 0 0 0 0 0 unknown 0 0.500231643921035 0.588496208190918 0.000463287842070947 hm5C_site_52093 DeepMRMD:0.588496208190918;iRNA_m5C:0.000463287842070947 52094 chrX 129305945 129305945 1 + C G rs190548497 129305945 - 129305925 129305965 41 GCTCGAGGCGAGCGAGCTCTGTGCGTGTGTGTGTGCGCGCG GCTCGAGGCGAGCGAGCTCTCTGCGTGTGTGTGTGCGCGCG Direct Gain 0 0.941750112068365 0 0.820119976997375 prediction 0.883500224136731 Functional Gain - RAB33A ENSG00000134594 UTR5 Human protein_coding chrX:129305945 chrX:129305945 . . 0 21 hm5C_associated_SNPs_132036 0 0 0 0 0 exosome 0 0.500231643623578 0.64023995399475 0.000463287247156607 hm5C_site_52094 DeepMRMD:0.64023995399475;iRNA_m5C:0.000463287247156607 52095 chr3 183381296 183381296 1 + T C SKCM 183381296 + 183381276 183381316 41 CGTTGGAGGATGTGAGCGAGTTGGAGGATTTAATCTTCCAT CGTTGGAGGATGTGAGCGAGCTGGAGGATTTAATCTTCCAT Direct Gain 0 0.941738974253866 0 0.478646636009216 prediction 0.883477948507731 Functional Gain - KLHL24 ENSG00000114796 CDS Human protein_coding chr3:183381296 chr3:183381296 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_132037 0 0 1 0 1 Ribosome 0 0.500231261453674 0 0.000462522907347385 hm5C_site_52095 DeepMRMD:0;iRNA_m5C:0.000462522907347385 52096 chr19 932572 932572 1 + C G ACC 932572 - 932552 932592 41 CTGGGGTGGCTGGGCCTTTCGGGGGAACAGTGCCGTGGTGC CTGGGGTGGCTGGGCCTTTCCGGGGAACAGTGCCGTGGTGC Direct Gain 0 0.941721929472342 0 0.953346788883209 prediction 0.883443858944683 Functional Gain - ARID3A ENSG00000116017 CDS Human protein_coding chr19:932572 chr19:932572 nonsynonymous SNV 0.067 0 21 hm5C_associated_SNPs_132038 0 0 0 0 0 Cytosol 0 0.50023239125715 0.906693577766418 0.000464782514299822 hm5C_site_52096 DeepMRMD:0.906693577766418;iRNA_m5C:0.000464782514299822 52097 chr20 49126926 49126926 1 + A C rs377261839 49126926 + 49126906 49126946 41 GGCTGCCGGTTGACATGAAGAAGCAGCAGCGGCTAGGGCGG GGCTGCCGGTTGACATGAAGCAGCAGCAGCGGCTAGGGCGG Direct Gain 0 0.941718527562601 0 0.87334018945694 prediction 0.883437055125201 Functional Gain - PTPN1 ENSG00000196396 UTR5 Human protein_coding chr20:49126926 chr20:49126926 . . 0 21 hm5C_associated_SNPs_132039 0 0 1 0 0 Ribosome 0 0.500231058831057 0.74668037891388 0.000462117662114458 hm5C_site_52097 DeepMRMD:0.74668037891388;iRNA_m5C:0.000462117662114458 52098 chr4 154259043 154259043 1 + A G rs567582725 154259043 - 154259023 154259063 41 GGGGGCTGGGGGGTCTGTACTGGGAGGAAATGCGTCGTCAC GGGGGCTGGGGGGTCTGTACCGGGAGGAAATGCGTCGTCAC Direct Gain 0 0.941712296434008 0 0.961768984794617 prediction 0.883424592868017 Functional Gain - TRIM2 ENSG00000109654 UTR3 Human protein_coding chr4:154259043 chr4:154259043 . . 0 21 hm5C_associated_SNPs_132040 0 0 0 0 0 Ribosome 0 0.500231643889622 0.923537969589234 0.000463287779243649 hm5C_site_52098 DeepMRMD:0.923537969589234;iRNA_m5C:0.000463287779243649 52099 chr14 29237362 29237362 1 + A G UCEC 29237362 - 29237342 29237382 41 GAAGGTGAGGCCGGTGGAGGTGAGGCGCGCACCGCGCTTGA GAAGGTGAGGCCGGTGGAGGCGAGGCGCGCACCGCGCTTGA Direct Gain 0 0.94171221666989 0 0.937391042709351 prediction 0.88342443333978 Functional Gain - FOXG1 ENSG00000176165 CDS Human protein_coding chr14:29237362 chr14:29237362 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_132041 0 0 0 0 0 Cytosol 0 0.500231633400052 0.874782085418702 0.000463266800104778 hm5C_site_52099 DeepMRMD:0.874782085418702;iRNA_m5C:0.000463266800104778 52100 chr10 81067225 81067225 1 + T G BRCA 81067225 - 81067205 81067245 41 GCCCGTGCATGAAGTCATTCATGGATGTCCCTCCAGGGTTC GCCCGTGCATGAAGTCATTCCTGGATGTCCCTCCAGGGTTC Direct Gain 0 0.941704538896232 0 0.776450514793396 prediction 0.883409077792464 Functional Gain - ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:81067225 chr10:81067225 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_132042 0 0 0 0 0 Nucleus 0 0.500231643921093 0.552901029586792 0.000463287842186855 hm5C_site_52100 DeepMRMD:0.552901029586792;iRNA_m5C:0.000463287842186855 52101 chr11 62439554 62439554 1 + G C rs55638384 62439554 + 62439534 62439574 41 GGAAGAACTGGATGGTTGGCGGCGAAGGCGGCGCCGGCGGG GGAAGAACTGGATGGTTGGCCGCGAAGGCGGCGCCGGCGGG Direct Gain 0 0.941668003381784 0 0.659370720386505 prediction 0.883336006763568 Functional Gain - UQCC3 ENSG00000204922 CDS Human protein_coding chr11:62439554 chr11:62439554 nonsynonymous SNV 0.111 1 21 hm5C_associated_SNPs_132043 1 0 1 0 0 Ribosome 0 0.500231643921093 0.31874144077301 0.000463287842185522 hm5C_site_52101 DeepMRMD:0.31874144077301;iRNA_m5C:0.000463287842185522 not specified not specified 52102 chr14 20404108 20404108 1 + G C HNSC 20404108 + 20404088 20404128 41 AGCGCAAGACTATCTCCTTTGAGGGTTGCATGGCCCAGATA AGCGCAAGACTATCTCCTTTCAGGGTTGCATGGCCCAGATA Direct Gain 0 0.941659458081192 0 0.810269117355347 prediction 0.883318916162383 Functional Gain - OR4K1 ENSG00000155249 CDS Human protein_coding chr14:20404108 chr14:20404108 nonsynonymous SNV 0.997 0 21 hm5C_associated_SNPs_132044 0 0 0 0 0 unknown 0 0.500231643921092 0.620538234710694 0.000463287842184856 hm5C_site_52102 DeepMRMD:0.620538234710694;iRNA_m5C:0.000463287842184856 52103 chr7 133821831 133821831 1 + T C CESC 133821831 + 133821811 133821851 41 GGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCTGGGA GGCCAAAGCACTCCATCACTCGGGGCGCTCAGGCTCTGGGA Direct Gain 0 0.941653458224643 0 0.9885493516922 prediction 0.883306916449287 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133821831 chr7:133821831 nonsynonymous SNV 0.666 3 21 hm5C_associated_SNPs_132045 0 0 0 0 2 cytosol 0 0.500231643921092 0.9770987033844 0.000463287842184856 hm5C_site_52103 DeepMRMD:0.9770987033844;iRNA_m5C:0.000463287842184856 52104 chr15 77324734 77324734 1 + C G rs149195362 77324734 - 77324714 77324754 41 TCCGCAAGCCGGACCTCACCGGGGGGCTCTGTGCCCGTGCT TCCGCAAGCCGGACCTCACCCGGGGGCTCTGTGCCCGTGCT Direct Gain 0 0.941643173297095 0 0.932007670402527 prediction 0.883286346594191 Functional Gain - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77324734 chr15:77324734 synonymous SNV . 0 21 hm5C_associated_SNPs_132046 1 0 0 0 0 exosome 0 0.500231643921096 0.864015340805054 0.000463287842191962 hm5C_site_52104 DeepMRMD:0.864015340805054;iRNA_m5C:0.000463287842191962 not specified not specified 52105 chr8 144640603 144640603 1 + C G rs112539016 144640603 - 144640583 144640623 41 ACCGTGACCGTCGGCGCCCCGAGGGTGGCGCGTCTGGCGCG ACCGTGACCGTCGGCGCCCCCAGGGTGGCGCGTCTGGCGCG Direct Gain 0 0.941642191483634 0 0.897216737270355 prediction 0.883284382967268 Functional Gain - GSDMD ENSG00000104518 CDS Human protein_coding chr8:144640603 chr8:144640603 nonsynonymous SNV 0.000 2 21 hm5C_associated_SNPs_132047 0 0 0 0 0 Ribosome 0 0.500231643921097 0.79443347454071 0.000463287842194404 hm5C_site_52105 DeepMRMD:0.79443347454071;iRNA_m5C:0.000463287842194404 52106 chr17 74554171 74554171 1 + G C rs11870902 74554171 + 74554151 74554191 41 GTCATAGGGCCGGCTTCTGCGGGGGAGAGCGCCTAACAACC GTCATAGGGCCGGCTTCTGCCGGGGAGAGCGCCTAACAACC Direct Gain 0 0.941633872640124 0 0.93420672416687 prediction 0.883267745280248 Functional Gain - SNHG16 ENSG00000163597 ncRNA_exonic Human processed_transcript chr17:74554171 chr17:74554171 . . 0 21 hm5C_associated_SNPs_132048 0 0 1 0 0 unknown 0 0.500231643920978 0.86841344833374 0.00046328784195504 hm5C_site_52106 DeepMRMD:0.86841344833374;iRNA_m5C:0.00046328784195504 52107 chr11 6411784 6411784 1 + G C rs79282481 6411784 + 6411764 6411804 41 GCTGGCTAGGGTCCAGGCCGGGGGGGACGGGACAGACGAAC GCTGGCTAGGGTCCAGGCCGCGGGGGACGGGACAGACGAAC Direct Gain 0 0.941624855646006 0 0.951911330223083 prediction 0.883249711292013 Functional Gain - SMPD1 ENSG00000166311 UTR5 Human protein_coding chr11:6411784 chr11:6411784 . . 0 21 hm5C_associated_SNPs_132049 1 0 1 0 0 Endoplasmic reticulum 0 0.500231370457815 0.903822660446166 0.000462740915629478 hm5C_site_52107 DeepMRMD:0.903822660446166;iRNA_m5C:0.000462740915629478 Sphingomyelin/cholesterol lipidosis Sphingomyelin/cholesterol lipidosis 52108 chr2 88407937 88407937 1 + G C LUSC 88407937 + 88407917 88407957 41 ACTGGGCATGGCCGTGATGCGGGCAGGGCTGACCAACTGGC ACTGGGCATGGCCGTGATGCCGGCAGGGCTGACCAACTGGC Direct Gain 0 0.94160746871013 0 0.708822786808014 prediction 0.883214937420259 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88407937 chr2:88407937 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_132050 0 0 0 0 1 exosome 0 0.500231649779741 0.417645573616028 0.000463299559481545 hm5C_site_52108 DeepMRMD:0.417645573616028;iRNA_m5C:0.000463299559481545 52109 chr16 89949798 89949798 1 + G C LUSC 89949798 + 89949778 89949818 41 AGGATGACCCTGTGGTGAACGGGGAGAGGTCTGGCTGTGCG AGGATGACCCTGTGGTGAACCGGGAGAGGTCTGGCTGTGCG Direct Gain 0 0.941579327626849 0 0.906654953956604 prediction 0.883158655253699 Functional Gain - TCF25 ENSG00000141002 CDS Human protein_coding chr16:89949798 chr16:89949798 nonsynonymous SNV 0.668 2 21 hm5C_associated_SNPs_132051 0 0 1 0 1 Cytosol 0 0.500231634038053 0.813309907913208 0.000463268076106083 hm5C_site_52109 DeepMRMD:0.813309907913208;iRNA_m5C:0.000463268076106083 52110 chr19 38572407 38572407 1 + A G LUAD 38572407 - 38572387 38572427 41 CATTGCGGGAGTGGTGGGGCTGGGGCGGGTGGTGGCGGTGG CATTGCGGGAGTGGTGGGGCCGGGGCGGGTGGTGGCGGTGG Direct Gain 0 0.941573998976663 0 0.913944125175476 prediction 0.883147997953327 Functional Gain - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38572407 chr19:38572407 nonsynonymous SNV 0.999 0 21 hm5C_associated_SNPs_132052 0 0 0 0 0 Ribosome 0 0.500231841045979 0.827888250350952 0.000463682091957462 hm5C_site_52110 DeepMRMD:0.827888250350952;iRNA_m5C:0.000463682091957462 52111 chr12 6499385 6499385 1 + A G rs147770937 6499385 - 6499365 6499405 41 GCGGGGAGCCCAGTGGATACTGGGGAAACATCTCCAGAAAT GCGGGGAGCCCAGTGGATACCGGGGAAACATCTCCAGAAAT Direct Gain 0 0.941567333187521 0 0.960112929344177 prediction 0.883134666375041 Functional Gain - LTBR ENSG00000111321 CDS Human protein_coding chr12:6499385 chr12:6499385 synonymous SNV . 0 21 hm5C_associated_SNPs_132053 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.920225858688354 0.000463287842184856 hm5C_site_52111 DeepMRMD:0.920225858688354;iRNA_m5C:0.000463287842184856 52112 chr17 63223423 63223423 1 + G C LUSC 63223423 + 63223403 63223443 41 ATCAAAATGGATGTGCCCACGGGGAGCGGGACCTGCTTGAT ATCAAAATGGATGTGCCCACCGGGAGCGGGACCTGCTTGAT Direct Gain 0 0.941563893148898 0 0.919337809085846 prediction 0.883127786297796 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63223423 chr17:63223423 synonymous SNV . 0 21 hm5C_associated_SNPs_132054 0 0 0 0 1 exosome 0 0.500231646381696 0.838675618171692 0.000463292763392964 hm5C_site_52112 DeepMRMD:0.838675618171692;iRNA_m5C:0.000463292763392964 52113 chr11 63994254 63994254 1 + A G LGG 63994254 - 63994234 63994274 41 CTTTAGCCGGGTCTCCCAGATGGCAGTGATGGCCTCGTCCC CTTTAGCCGGGTCTCCCAGACGGCAGTGATGGCCTCGTCCC Direct Gain 0 0.941563246196193 0 0.780248641967773 prediction 0.883126492392386 Functional Gain - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63994254 chr11:63994254 nonsynonymous SNV 0.988 0 21 hm5C_associated_SNPs_132055 0 0 0 0 0 Ribosome 0 0.500231650638579 0.560497283935546 0.00046330127715799 hm5C_site_52113 DeepMRMD:0.560497283935546;iRNA_m5C:0.00046330127715799 52114 chr7 97596161 97596161 1 + T C rs199781880 97596161 + 97596141 97596181 41 GTTGGAGAGGAAGAAGTACATGGGGGTGTGGAGGTGGGAGT GTTGGAGAGGAAGAAGTACACGGGGGTGTGGAGGTGGGAGT Direct Gain 0 0.941555149569262 0 0.935712814331055 prediction 0.883110299138524 Functional Gain - MGC72080 ENSG00000183444 ncRNA_exonic Human unprocessed_pseudogene chr7:97596161 chr7:97596161 . . 0 21 hm5C_associated_SNPs_132056 0 0 0 0 0 unknown 0 0.500231643921092 0.87142562866211 0.000463287842184856 hm5C_site_52114 DeepMRMD:0.87142562866211;iRNA_m5C:0.000463287842184856 52115 chr1 1078767 1078767 1 + T C rs183317491 1078767 + 1078747 1078787 41 TCTCCCAGCCCCGCACTGCCTGGGGGCTCCCCCGACCCTCT TCTCCCAGCCCCGCACTGCCCGGGGGCTCCCCCGACCCTCT Direct Gain 0 0.941542236040759 0 0.954522490501404 prediction 0.883084472081517 Functional Gain - LINC01342 ENSG00000223823 ncRNA_exonic Human lincRNA chr1:1078767 chr1:1078767 . . 0 21 hm5C_associated_SNPs_132057 0 0 0 0 0 unknown 0 0.500236055462863 0.909044981002808 0.000472110925726854 hm5C_site_52115 DeepMRMD:0.909044981002808;iRNA_m5C:0.000472110925726854 52116 chr15 81045976 81045976 1 + A G rs149997032 81045976 - 81045956 81045996 41 GGCAGGAGAATTGCTTGAACTAGGAGTGGGAGGTTGCAGTG GGCAGGAGAATTGCTTGAACCAGGAGTGGGAGGTTGCAGTG Direct Gain 0 0.941538097122091 0 0.897405028343201 prediction 0.883076194244182 Functional Gain - ABHD17C ENSG00000136379 intronic Human protein_coding chr15:81045976 chr15:81045976 . . 0 21 hm5C_associated_SNPs_132058 0 0 0 0 0 exosome 0 0.500231643921092 0.794810056686402 0.000463287842184856 hm5C_site_52116 DeepMRMD:0.794810056686402;iRNA_m5C:0.000463287842184856 52117 chrX 140993285 140993285 1 + A G STAD 140993285 - 140993265 140993305 41 GGGGAATCTGGAGAGGAGACTGGGAGTCCTCCCCCTCAGGA GGGGAATCTGGAGAGGAGACCGGGAGTCCTCCCCCTCAGGA Direct Gain 0 0.941525550325636 0 0.856599390506744 prediction 0.883051100651272 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993285 chrX:140993285 nonsynonymous SNV 0.018 1 21 hm5C_associated_SNPs_132059 0 0 0 0 0 exosome 0 0.500231643921055 0.713198781013488 0.000463287842109805 hm5C_site_52117 DeepMRMD:0.713198781013488;iRNA_m5C:0.000463287842109805 52118 chr8 22428690 22428690 1 + A G STAD 22428690 - 22428670 22428710 41 GGTGGGGAAGGAGAAGCCAGTGCGACGGGGGGAGGTCTGTC GGTGGGGAAGGAGAAGCCAGCGCGACGGGGGGAGGTCTGTC Direct Gain 0 0.941522309923705 0 0.84842574596405 prediction 0.88304461984741 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22428690 chr8:22428690 nonsynonymous SNV 0.211 0 21 hm5C_associated_SNPs_132060 0 0 0 0 0 Cytosol 0 0.500231643921116 0.6968514919281 0.000463287842232818 hm5C_site_52118 DeepMRMD:0.6968514919281;iRNA_m5C:0.000463287842232818 52119 chr8 21863508 21863508 1 + T C rs150810269 21863508 + 21863488 21863528 41 AAGTGAGCCCACTGCTCTCCTGGGAGCAATGTGGGTGAGTC AAGTGAGCCCACTGCTCTCCCGGGAGCAATGTGGGTGAGTC Direct Gain 0 0.941513051018407 0 0.93372654914856 prediction 0.883026102036814 Functional Gain - XPO7 ENSG00000130227 UTR3 Human protein_coding chr8:21863508 chr8:21863508 . . 0 21 hm5C_associated_SNPs_132061 0 0 1 0 0 Cytosol 0 0.500231643921092 0.86745309829712 0.000463287842184856 hm5C_site_52119 DeepMRMD:0.86745309829712;iRNA_m5C:0.000463287842184856 52120 chr9 123615481 123615481 1 + T C rs139678289 123615481 + 123615461 123615501 41 GGTGTCAAGGTTGACTGTTATAGGAAATGGGAGGGGAGAGG GGTGTCAAGGTTGACTGTTACAGGAAATGGGAGGGGAGAGG Direct Gain 0 0.941511787790371 0 0.782256960868835 prediction 0.883023575580743 Functional Gain - PSMD5-AS1 ENSG00000226752 ncRNA_exonic Human transcribed_unitary_pseudogene chr9:123615481 chr9:123615481 . . 0 21 hm5C_associated_SNPs_132062 0 0 1 0 0 unknown 0 0.500231643921092 0.56451392173767 0.000463287842184856 hm5C_site_52120 DeepMRMD:0.56451392173767;iRNA_m5C:0.000463287842184856 52121 chr5 137146292 137146292 1 + G C rs181959104 137146292 + 137146272 137146312 41 AGTCCCAGCTACTTAGATGAGAGGAAGGATCACCTGAGCCT AGTCCCAGCTACTTAGATGACAGGAAGGATCACCTGAGCCT Direct Gain 0 0.941507278481021 0 0.435421049594879 prediction 0.883014556962041 Functional Gain - NPY6R ENSG00000226306 ncRNA_exonic Human transcribed_processed_pseudogene chr5:137146292 chr5:137146292 . . 0 21 hm5C_associated_SNPs_132063 0 0 0 0 0 unknown 0 0.500231644592907 0 0.000463289185813176 hm5C_site_52121 DeepMRMD:0;iRNA_m5C:0.000463289185813176 52122 chr19 50912058 50912058 1 + A G UCEC 50912058 - 50912038 50912078 41 GGAGAAGTCCAGGGTGGCGATGGGGACGTCGTAGTACCTGG GGAGAAGTCCAGGGTGGCGACGGGGACGTCGTAGTACCTGG Direct Gain 0 0.94149470862722 0 0.911384880542755 prediction 0.882989417254441 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912058 chr19:50912058 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_132064 0 0 0 0 0 Nucleus 0 0.500231643921093 0.82276976108551 0.0004632878421853 hm5C_site_52122 DeepMRMD:0.82276976108551;iRNA_m5C:0.0004632878421853 52123 chr11 6807012 6807012 1 + T C UCEC 6807012 + 6806992 6807032 41 TCTTCCCACCTGACTGTGGTTGGGATGTTCTATGGAGCTGC TCTTCCCACCTGACTGTGGTCGGGATGTTCTATGGAGCTGC Direct Gain 0 0.941484080930861 0 0.8262939453125 prediction 0.882968161861723 Functional Gain - OR2AG1 ENSG00000170803 CDS Human other chr11:6807012 chr11:6807012 synonymous SNV . 0 21 hm5C_associated_SNPs_132065 0 0 0 0 0 unknown 0 0.500231643921092 0.652587890625 0.000463287842184856 hm5C_site_52123 DeepMRMD:0.652587890625;iRNA_m5C:0.000463287842184856 52124 chr7 56564308 56564308 1 + T C LUSC 56564308 + 56564288 56564328 41 GTTGAGGGCCCAGACCAGGCTAGGGGCCATCCCCTTTCCCG GTTGAGGGCCCAGACCAGGCCAGGGGCCATCCCCTTTCCCG Direct Gain 0 0.94148098496526 0 0.667575120925903 prediction 0.882961969930519 Functional Gain - DKFZp434L192 ENSG00000261275 ncRNA_exonic Human lincRNA chr7:56564308 chr7:56564308 . . 0 21 hm5C_associated_SNPs_132066 0 0 0 0 0 unknown 0 0.500231643921092 0.335150241851806 0.000463287842184856 hm5C_site_52124 DeepMRMD:0.335150241851806;iRNA_m5C:0.000463287842184856 52125 chr17 6544275 6544275 1 + T C rs1157901 6544275 + 6544255 6544295 41 TCAGAGGCTCCCGTAGTCTTTAGCGGCGCTGGCTTCCGCAG TCAGAGGCTCCCGTAGTCTTCAGCGGCGCTGGCTTCCGCAG Direct Gain 0 0.941470844594214 0 0.792570948600769 prediction 0.882941689188428 Functional Gain - TXNDC17 ENSG00000129235 UTR5 Human protein_coding chr17:6544275 chr17:6544275 . . 0 21 hm5C_associated_SNPs_132067 0 0 0 0 0 Ribosome 0 0.500231643886584 0.585141897201538 0.000463287773168064 hm5C_site_52125 DeepMRMD:0.585141897201538;iRNA_m5C:0.000463287773168064 52126 chrX 13587829 13587829 1 + T G rs72614507 13587829 - 13587809 13587849 41 TGCTGTCCCTGCAGTCTGGGAGGGGAGGCCAGGCACCGCGG TGCTGTCCCTGCAGTCTGGGCGGGGAGGCCAGGCACCGCGG Direct Gain 0 0.941470378587732 0 0.846473097801208 prediction 0.882940757175465 Functional Gain - EGFL6 ENSG00000198759 UTR5 Human protein_coding chrX:13587829 chrX:13587829 . . 0 21 hm5C_associated_SNPs_132068 0 0 0 0 0 exosome 0 0.500231643921092 0.692946195602416 0.000463287842184856 hm5C_site_52126 DeepMRMD:0.692946195602416;iRNA_m5C:0.000463287842184856 52127 chr3 10291095 10291095 1 + T C UCEC 10291095 + 10291075 10291115 41 CTTGCTCGCGGAGGTTATCCTGGGGCTCATCCCGCCGCAGA CTTGCTCGCGGAGGTTATCCCGGGGCTCATCCCGCCGCAGA Direct Gain 0 0.941458010460008 0 0.956287264823914 prediction 0.882916020920016 Functional Gain - TATDN2 ENSG00000157014;ENSG00000272410 CDS Human other chr3:10291095 chr3:10291095 nonsynonymous SNV 0.048 0 21 hm5C_associated_SNPs_132069 0 0 1 0 0 Cytosol 0 0.500231643956108 0.912574529647828 0.000463287912215948 hm5C_site_52127 DeepMRMD:0.912574529647828;iRNA_m5C:0.000463287912215948 52128 chr9 125797414 125797414 1 + A G OV 125797414 - 125797394 125797434 41 TCACGATGAACAGGGTGAAGTAGGAGTCGGTGTGCCAGGAC TCACGATGAACAGGGTGAAGCAGGAGTCGGTGTGCCAGGAC Direct Gain 0 0.941455258074422 0 0.802605986595154 prediction 0.882910516148844 Functional Gain - GPR21 ENSG00000188394 CDS Human protein_coding chr9:125797414 chr9:125797414 nonsynonymous SNV 0.960 2 21 hm5C_associated_SNPs_132070 0 0 0 0 0 exosome 0 0.500231643874716 0.605211973190308 0.000463287749431274 hm5C_site_52128 DeepMRMD:0.605211973190308;iRNA_m5C:0.000463287749431274 52129 chr11 82868483 82868483 1 + T C LUSC 82868483 + 82868463 82868503 41 GGAGGGGGGCCGCGGCGCAATGTCAGAGCAGACGCCGGCCG GGAGGGGGGCCGCGGCGCAACGTCAGAGCAGACGCCGGCCG Direct Gain 0 0.941453441011717 0 0.392159551382065 prediction 0.882906882023435 Functional Gain - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82868483 chr11:82868483 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_132071 0 0 1 0 0 Nucleus 0 0.50023170298599 0 0.000463405971980801 hm5C_site_52129 DeepMRMD:0;iRNA_m5C:0.000463405971980801 52130 chr17 46628518 46628518 1 + A G rs559346033 46628518 - 46628498 46628538 41 GGCTGTGGTGGCGGCGGCGGTGGCGGCGGCGGCGGAGGCAG GGCTGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGAGGCAG Direct Gain 0 0.94144052724744 0 0.941200375556946 prediction 0.88288105449488 Functional Gain - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628518 chr17:46628518 synonymous SNV . 0 21 hm5C_associated_SNPs_132072 0 0 0 0 1 Nucleus 0 0.500231643921092 0.882400751113892 0.000463287842184856 hm5C_site_52130 DeepMRMD:0.882400751113892;iRNA_m5C:0.000463287842184856 52131 chr17 16593854 16593854 1 + C G rs562771471 16593854 - 16593834 16593874 41 ACCAGCTGTAGGGGAAGCCCGAGGACCACTGGTCCCCCGGG ACCAGCTGTAGGGGAAGCCCCAGGACCACTGGTCCCCCGGG Direct Gain 0 0.941426972018326 0 0.94325864315033 prediction 0.882853944036653 Functional Gain - CCDC144A ENSG00000170160;ENSG00000266302 CDS Human other chr17:16593854 chr17:16593854 nonsynonymous SNV 0.001 2 21 hm5C_associated_SNPs_132073 0 0 0 0 0 exosome 0 0.500231643921092 0.88651728630066 0.000463287842184856 hm5C_site_52131 DeepMRMD:0.88651728630066;iRNA_m5C:0.000463287842184856 52132 chr1 1220974 1220974 1 + A G rs72896208 1220974 - 1220954 1220994 41 CCTTCAGGTGGCAGGGCCTCTGGGGAGCCACAGGCCCAGGC CCTTCAGGTGGCAGGGCCTCCGGGGAGCCACAGGCCCAGGC Direct Gain 0 0.941426586625828 0 0.923116564750671 prediction 0.882853173251656 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1220974 chr1:1220974 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_132074 0 0 0 0 0 exosome 0 0.500231643920774 0.846233129501342 0.00046328784154781 hm5C_site_52132 DeepMRMD:0.846233129501342;iRNA_m5C:0.00046328784154781 52133 chr1 53930369 53930369 1 + A G COAD 53930369 - 53930349 53930389 41 AGCGGTGGAAGGGGCGGCAGTGGCGGCGGCGGCGGCGGCAG AGCGGTGGAAGGGGCGGCAGCGGCGGCGGCGGCGGCGGCAG Direct Gain 0 0.94141019744682 0 0.900140821933746 prediction 0.882820394893641 Functional Gain - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53930369 chr1:53930369 synonymous SNV . 0 21 hm5C_associated_SNPs_132075 0 0 0 0 0 unknown 0 0.500231643891276 0.800281643867492 0.000463287782551669 hm5C_site_52133 DeepMRMD:0.800281643867492;iRNA_m5C:0.000463287782551669 52134 chr10 50819881 50819881 1 + T G CESC 50819881 - 50819861 50819901 41 CACGAGCTGGCGCCGATCACAGCCAGCCCAAGCGCGCCGTA CACGAGCTGGCGCCGATCACCGCCAGCCCAAGCGCGCCGTA Direct Gain 0 0.941402478685745 0 0.821066737174988 prediction 0.882804957371491 Functional Gain - SLC18A3 ENSG00000187714 CDS Human protein_coding chr10:50819881 chr10:50819881 synonymous SNV . 0 21 hm5C_associated_SNPs_132076 0 0 0 0 0 exosome 0 0.500231644197015 0.642133474349976 0.000463288394030537 hm5C_site_52134 DeepMRMD:0.642133474349976;iRNA_m5C:0.000463288394030537 52135 chr10 99498313 99498313 1 + C G rs34979921 99498313 - 99498293 99498333 41 TGGGGACTTGGTAGGAAAAGGTGGAGACTCCAGGGGAGCCT TGGGGACTTGGTAGGAAAAGCTGGAGACTCCAGGGGAGCCT Direct Gain 0 0.941388902644256 0 0.568719387054443 prediction 0.882777805288511 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99498313 chr10:99498313 nonsynonymous SNV 0.008 1 21 hm5C_associated_SNPs_132077 2 0 0 0 0 Ribosome 0 0.500231643921092 0.137438774108886 0.000463287842184856 hm5C_site_52135 DeepMRMD:0.137438774108886;iRNA_m5C:0.000463287842184856 Spastic Paraplegia, Dominant Spastic Paraplegia, Dominant 52136 chr12 20522514 20522514 1 + A C rs201132768 20522514 + 20522494 20522534 41 TAAGGAGGCGGCGGCGGCGGAGGAGGAGGAAGCAGCCCCGG TAAGGAGGCGGCGGCGGCGGCGGAGGAGGAAGCAGCCCCGG Direct Gain 0 0.941381116235912 0 0.95306921005249 prediction 0.882762232471824 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20522514 chr12:20522514 nonsynonymous SNV 0.942 0 21 hm5C_associated_SNPs_132078 0 0 0 0 0 Nucleus 0 0.500231643921094 0.90613842010498 0.000463287842188853 hm5C_site_52136 DeepMRMD:0.90613842010498;iRNA_m5C:0.000463287842188853 52137 chr3 23930680 23930680 1 + T C rs140378760 23930680 + 23930660 23930700 41 TTGGACATATTGAAAGATAATTGGAGTCCAGCACTAACCAT TTGGACATATTGAAAGATAACTGGAGTCCAGCACTAACCAT Direct Gain 0 0.941364487652907 0 0.263780832290649 prediction 0.882728975305813 Functional Gain - UBE2E1 ENSG00000170142 CDS Human protein_coding chr3:23930680 chr3:23930680 synonymous SNV . 0 21 hm5C_associated_SNPs_132079 0 0 1 0 2 chromatin 0 0.500231643921092 0 0.000463287842184856 hm5C_site_52137 DeepMRMD:0;iRNA_m5C:0.000463287842184856 52138 chr6 16290717 16290717 1 + T C STAD 16290717 + 16290697 16290737 41 TGGAGCAGATTTTGTCATGCTGGGAGGAATGTTTTCGGGTC TGGAGCAGATTTTGTCATGCCGGGAGGAATGTTTTCGGGTC Direct Gain 0 0.941362905344392 0 0.898127794265747 prediction 0.882725810688784 Functional Gain - GMPR ENSG00000137198 CDS Human protein_coding chr6:16290717 chr6:16290717 nonsynonymous SNV 1.000 5 21 hm5C_associated_SNPs_132080 0 0 0 0 1 Cytosol 0 0.500231643921095 0.796255588531494 0.000463287842189297 hm5C_site_52138 DeepMRMD:0.796255588531494;iRNA_m5C:0.000463287842189297 52139 chr17 48173573 48173573 1 + C G rs187051525 48173573 - 48173553 48173593 41 CCTGGGGCCCCTGCCCAGCTGGGGAGAGGCTGCCAGGCCGG CCTGGGGCCCCTGCCCAGCTCGGGAGAGGCTGCCAGGCCGG Direct Gain 0 0.941359607135758 0 0.942710757255554 prediction 0.882719214271515 Functional Gain - PDK2 ENSG00000005882 UTR5 Human protein_coding chr17:48173573 chr17:48173573 . . 0 21 hm5C_associated_SNPs_132081 0 0 0 0 0 Ribosome 0 0.500231537638112 0.885421514511108 0.000463075276223135 hm5C_site_52139 DeepMRMD:0.885421514511108;iRNA_m5C:0.000463075276223135 52140 chr11 114569227 114569227 1 + A C LIHC 114569227 + 114569207 114569247 41 GCTGCTCATCCACCCCAGTGAAGGGGTATCAGCTCTCTGGA GCTGCTCATCCACCCCAGTGCAGGGGTATCAGCTCTCTGGA Direct Gain 0 0.941358046527807 0 0.679734885692596 prediction 0.882716093055615 Functional Gain - NXPE2 ENSG00000204361 CDS Human protein_coding chr11:114569227 chr11:114569227 nonsynonymous SNV 0.932 4 21 hm5C_associated_SNPs_132082 0 0 0 0 0 exosome 0 0.500231603878195 0.359469771385192 0.000463207756390416 hm5C_site_52140 DeepMRMD:0.359469771385192;iRNA_m5C:0.000463207756390416 52141 chr4 78808417 78808417 1 + T C PAAD 78808417 + 78808397 78808437 41 GGAAGAAAATGGAGCTGCATTTGCAGGAGGCACTAGTCTGA GGAAGAAAATGGAGCTGCATCTGCAGGAGGCACTAGTCTGA Direct Gain 0 0.941356324772898 0 0.875155091285706 prediction 0.882712649545795 Functional Gain - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78808417 chr4:78808417 nonsynonymous SNV 0.999 1 21 hm5C_associated_SNPs_132083 0 0 1 0 2 Ribosome 0 0.500231643921093 0.750310182571412 0.000463287842185522 hm5C_site_52141 DeepMRMD:0.750310182571412;iRNA_m5C:0.000463287842185522 52142 chr9 130550563 130550563 1 + T C SKCM 130550563 + 130550543 130550583 41 GGTCCTGAAGCTGGCAGACTTTGGGCTGGCCCGGGCCTTCA GGTCCTGAAGCTGGCAGACTCTGGGCTGGCCCGGGCCTTCA Direct Gain 0 0.941342038894846 0 0.863568603992462 prediction 0.882684077789691 Functional Gain - CDK9 ENSG00000136807 CDS Human protein_coding chr9:130550563 chr9:130550563 nonsynonymous SNV 0.998 4 21 hm5C_associated_SNPs_132084 0 0 1 0 1 Endoplasmic reticulum 0 0.500231643921092 0.727137207984924 0.000463287842184856 hm5C_site_52142 DeepMRMD:0.727137207984924;iRNA_m5C:0.000463287842184856 52143 chr1 155059914 155059914 1 + A G rs139174640 155059914 - 155059894 155059934 41 GGAGGATAGGTGGGACCACATAGGGTGAGCAGGGCAAGGTC GGAGGATAGGTGGGACCACACAGGGTGAGCAGGGCAAGGTC Direct Gain 0 0.941339385621581 0 0.877519130706787 prediction 0.882678771243162 Functional Gain - EFNA3 ENSG00000143590 UTR3 Human protein_coding chr1:155059914 chr1:155059914 . . 0 21 hm5C_associated_SNPs_132085 0 0 0 0 0 chromatin 0 0.500231643921092 0.755038261413574 0.000463287842184856 hm5C_site_52143 DeepMRMD:0.755038261413574;iRNA_m5C:0.000463287842184856 52144 chr19 10225071 10225071 1 + A G rs75945356 10225071 - 10225051 10225091 41 GCATGATGTGGTAGGGCACATAGGAGCTGGCGTAGAGGGCC GCATGATGTGGTAGGGCACACAGGAGCTGGCGTAGAGGGCC Direct Gain 0 0.941335679799307 0 0.458576947450638 prediction 0.882671359598614 Functional Gain - P2RY11;PPAN-P2RY11 ENSG00000130810;ENSG00000243207;ENSG00000244165 CDS Human other chr19:10225071 chr19:10225071 nonsynonymous SNV 0.020 3 21 hm5C_associated_SNPs_132086 0 0 0 0 0 unknown 0 0.500231641333054 0 0.0004632826661084 hm5C_site_52144 DeepMRMD:0;iRNA_m5C:0.0004632826661084 52145 chr12 71978437 71978437 1 + A G STAD 71978437 - 71978417 71978457 41 AGCTGGTGATGGCACGGAACTGGGAGGCAGGTCATAAGTGA AGCTGGTGATGGCACGGAACCGGGAGGCAGGTCATAAGTGA Direct Gain 0 0.941333948201602 0 0.808947324752808 prediction 0.882667896403204 Functional Gain - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71978437 chr12:71978437 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_132087 0 0 0 0 0 Nucleus 0 0.500232229266156 0.617894649505616 0.000464458532311918 hm5C_site_52145 DeepMRMD:0.617894649505616;iRNA_m5C:0.000464458532311918 52146 chr12 56498365 56498365 1 + C G SARC 56498365 - 56498345 56498385 41 GCGGGCAGGCAGGCGAGAGCGAGAAGCTGCGAGCGCGCGGG GCGGGCAGGCAGGCGAGAGCCAGAAGCTGCGAGCGCGCGGG Direct Gain 0 0.941328541688737 0 0.934856534004211 prediction 0.882657083377475 Functional Gain - PA2G4 ENSG00000170515 UTR5 Human protein_coding chr12:56498365 chr12:56498365 . . 0 21 hm5C_associated_SNPs_132088 0 0 0 0 0 Ribosome 0 0.500231648623699 0.869713068008422 0.000463297247398131 hm5C_site_52146 DeepMRMD:0.869713068008422;iRNA_m5C:0.000463297247398131 52147 chr17 73717541 73717541 1 + C G rs538155736 73717541 - 73717521 73717561 41 AGGGCGGGCGCGGGGGTTGGGGGGGTGGGGACGAGGCGGGC AGGGCGGGCGCGGGGGTTGGCGGGGTGGGGACGAGGCGGGC Direct Gain 0 0.94132311606363 0 0.962112128734589 prediction 0.88264623212726 Functional Gain - ITGB4 ENSG00000132470 UTR5 Human protein_coding chr17:73717541 chr17:73717541 . . 0 21 hm5C_associated_SNPs_132089 0 0 0 0 0 Cytosol 0 0.500231643921093 0.924224257469178 0.000463287842185078 hm5C_site_52147 DeepMRMD:0.924224257469178;iRNA_m5C:0.000463287842185078 52148 chr11 46366904 46366904 1 + C G rs574394365 46366904 - 46366884 46366924 41 CTGACGGGGGTGGGGTCGAGGGGGGGGCCTGCTAGAGGCCG CTGACGGGGGTGGGGTCGAGCGGGGGGCCTGCTAGAGGCCG Direct Gain 0 0.941319427628336 0 0.94022536277771 prediction 0.882638855256671 Functional Gain - DGKZ ENSG00000149091 UTR5 Human protein_coding chr11:46366904 chr11:46366904 . . 0 21 hm5C_associated_SNPs_132090 0 0 0 0 0 Ribosome 0 0.500231644512434 0.88045072555542 0.000463289024867475 hm5C_site_52148 DeepMRMD:0.88045072555542;iRNA_m5C:0.000463289024867475 52149 chrX 103296457 103296457 1 + G C rs781811287 103296457 + 103296437 103296477 41 AGTGGGAAAGAACCACCCCAGAGGGCCCAACACATAGCCAC AGTGGGAAAGAACCACCCCACAGGGCCCAACACATAGCCAC Direct Gain 0 0.941317474472877 0 0.715650022029877 prediction 0.882634948945753 Functional Gain - H2BFM ENSG00000101812 UTR3 Human protein_coding chrX:103296457 chrX:103296457 . . 0 21 hm5C_associated_SNPs_132091 0 0 0 0 0 unknown 0 0.500231643921092 0.431300044059754 0.000463287842184856 hm5C_site_52149 DeepMRMD:0.431300044059754;iRNA_m5C:0.000463287842184856 52150 chr11 66192121 66192121 1 + C G rs142965018 66192121 - 66192101 66192141 41 GCTGGGCTAGGGCCAAGAGCGTGCAGTCCCCATTACCAGGG GCTGGGCTAGGGCCAAGAGCCTGCAGTCCCCATTACCAGGG Direct Gain 0 0.941309622158446 0 0.610323309898376 prediction 0.882619244316892 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66192121 chr11:66192121 nonsynonymous SNV 0.960 4 21 hm5C_associated_SNPs_132092 0 0 0 0 0 unknown 0 0.500231643921092 0.220646619796752 0.000463287842184856 hm5C_site_52150 DeepMRMD:0.220646619796752;iRNA_m5C:0.000463287842184856 52151 chrX 90691125 90691125 1 + A G LUSC 90691125 - 90691105 90691145 41 ACCTCAGCCGCCCGCTCTTCTGGGAATTTGAATCTGCCAAC ACCTCAGCCGCCCGCTCTTCCGGGAATTTGAATCTGCCAAC Direct Gain 0 0.941309608499449 0 0.871710240840912 prediction 0.882619216998898 Functional Gain - PABPC5 ENSG00000174740 CDS Human protein_coding chrX:90691125 chrX:90691125 synonymous SNV . 0 21 hm5C_associated_SNPs_132093 0 0 0 0 0 exosome 0 0.500231643771303 0.743420481681824 0.000463287542606716 hm5C_site_52151 DeepMRMD:0.743420481681824;iRNA_m5C:0.000463287542606716 52152 chr1 29041129 29041129 1 + T C UCEC 29041129 + 29041109 29041149 41 GAGGATGGGCAGACCATCATTGAGATTGATCCAGCCCCGGA GAGGATGGGCAGACCATCATCGAGATTGATCCAGCCCCGGA Direct Gain 0 0.941304941246611 0 0.653148770332336 prediction 0.882609882493221 Functional Gain - GMEB1 ENSG00000162419 CDS Human protein_coding chr1:29041129 chr1:29041129 synonymous SNV . 0 21 hm5C_associated_SNPs_132094 0 0 1 0 0 Ribosome 0 0.503156521256328 0.306297540664672 0.00631304251265696 hm5C_site_52152 DeepMRMD:0.306297540664672;iRNA_m5C:0.00631304251265696 52153 chr15 74425777 74425777 1 + C G COAD 74425777 - 74425757 74425797 41 GCTGGGCGGTGCACAGGGCAGGGCGGGCAGGCGGTACACCG GCTGGGCGGTGCACAGGGCACGGCGGGCAGGCGGTACACCG Direct Gain 0 0.941267850402467 0 0.551231205463409 prediction 0.882535700804934 Functional Gain - ISLR2 ENSG00000167178 CDS Human protein_coding chr15:74425777 chr15:74425777 nonsynonymous SNV 0.711 2 21 hm5C_associated_SNPs_132095 0 0 0 0 0 Nucleus 0 0.500231643921111 0.102462410926818 0.000463287842222604 hm5C_site_52153 DeepMRMD:0.102462410926818;iRNA_m5C:0.000463287842222604 52154 chr11 55579204 55579204 1 + A C UCEC 55579204 + 55579184 55579224 41 TGTTGGCTAATATCTTTAACAAGGACAAAGCCATCTCCTTC TGTTGGCTAATATCTTTAACCAGGACAAAGCCATCTCCTTC Direct Gain 0 0.941265733775521 0 0.903870820999146 prediction 0.882531467551041 Functional Gain - OR5L1 ENSG00000186117 CDS Human other chr11:55579204 chr11:55579204 nonsynonymous SNV 0.000 1 21 hm5C_associated_SNPs_132096 0 0 0 0 0 unknown 0 0.500231848340668 0.807741641998292 0.000463696681336723 hm5C_site_52154 DeepMRMD:0.807741641998292;iRNA_m5C:0.000463696681336723 52155 chr10 15115590 15115590 1 + T C rs7081383 15115590 + 15115570 15115610 41 AATGGTGTGAACCTGGGAGGTGGAGCTTGCAGTGAACCGAG AATGGTGTGAACCTGGGAGGCGGAGCTTGCAGTGAACCGAG Direct Gain 0 0.941261619035638 0 0.871724724769592 prediction 0.882523238071276 Functional Gain - ACBD7-DCLRE1CP1 ENSG00000237470 ncRNA_intronic Human unprocessed_pseudogene chr10:15115590 chr10:15115590 . . 0 21 hm5C_associated_SNPs_132097 0 0 0 0 0 unknown 0 0.500231643920927 0.743449449539184 0.000463287841854898 hm5C_site_52155 DeepMRMD:0.743449449539184;iRNA_m5C:0.000463287841854898 52156 chr19 7535057 7535057 1 + C G LUSC 7535057 - 7535037 7535077 41 CCTTGAGAGAGAAGCCCTCGGAGGGGCTGTCAGCTGGCGGT CCTTGAGAGAGAAGCCCTCGCAGGGGCTGTCAGCTGGCGGT Direct Gain 0 0.941260252450766 0 0.927421510219574 prediction 0.882520504901533 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7535057 chr19:7535057 nonsynonymous SNV 0.007 0 21 hm5C_associated_SNPs_132098 0 0 0 0 0 Cytosol 0 0.500231643921091 0.854843020439148 0.00046328784218197 hm5C_site_52156 DeepMRMD:0.854843020439148;iRNA_m5C:0.00046328784218197 52157 chr9 2123867 2123867 1 + T C UCEC 2123867 + 2123847 2123887 41 AGAAGAGGAGGAGAAAATATTTGGGAGGGGGTCCCGCCAGC AGAAGAGGAGGAGAAAATATCTGGGAGGGGGTCCCGCCAGC Direct Gain 0 0.941249026923109 0 0.859599232673645 prediction 0.882498053846219 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2123867 chr9:2123867 nonsynonymous SNV 0.999 5 21 hm5C_associated_SNPs_132099 0 0 1 0 0 Nucleus 0 0.500231643925105 0.71919846534729 0.000463287850210437 hm5C_site_52157 DeepMRMD:0.71919846534729;iRNA_m5C:0.000463287850210437 52158 chr17 74733003 74733003 1 + C G LUAD 74733003 - 74732983 74733023 41 GCCATGGACGGGGCCGTGCTGGACGGCCGCGAGCTGCGGGT GCCATGGACGGGGCCGTGCTCGACGGCCGCGAGCTGCGGGT Direct Gain 0 0.941238749269847 0 0.898660838603973 prediction 0.882477498539695 Functional Gain - SRSF2 ENSG00000161547 CDS Human protein_coding chr17:74733003 chr17:74733003 synonymous SNV . 0 21 hm5C_associated_SNPs_132100 0 0 1 0 1 Ribosome 0 0.500230530313986 0.797321677207946 0.000461060627972021 hm5C_site_52158 DeepMRMD:0.797321677207946;iRNA_m5C:0.000461060627972021 52159 chr10 47769329 47769329 1 + C G CESC 47769329 - 47769309 47769349 41 GAGCAAAGGCAGCCCGGGAAGAGGAGTAGGGGCTGAAACCA GAGCAAAGGCAGCCCGGGAACAGGAGTAGGGGCTGAAACCA Direct Gain 0 0.941213317804945 0 0.833913266658783 prediction 0.88242663560989 Functional Gain - ANXA8L1;CTSLP2 ENSG00000215033 CDS Human other chr10:47769329 chr10:47769329 synonymous SNV . 0 21 hm5C_associated_SNPs_132101 0 0 0 0 0 unknown 0 0.500231643919408 0.667826533317566 0.000463287838816662 hm5C_site_52159 DeepMRMD:0.667826533317566;iRNA_m5C:0.000463287838816662 52160 chr11 30352809 30352809 1 + T C LUAD 30352809 + 30352789 30352829 41 CACTTTTCTGAGTGCTAAATTTGGAAGACAGCTTGTACCTG CACTTTTCTGAGTGCTAAATCTGGAAGACAGCTTGTACCTG Direct Gain 0 0.941193874500415 0 0.551990032196045 prediction 0.88238774900083 Functional Gain - ARL14EP ENSG00000152219 CDS Human protein_coding chr11:30352809 chr11:30352809 nonsynonymous SNV 0.987 2 21 hm5C_associated_SNPs_132102 0 0 1 0 0 chromatin 0 0.500229711919062 0.10398006439209 0.00045942383812303 hm5C_site_52160 DeepMRMD:0.10398006439209;iRNA_m5C:0.00045942383812303 52161 chr17 65714065 65714065 1 + T C COAD 65714065 + 65714045 65714085 41 GTACTTAGGTTTGCTCAAAATGGCAGCGCTGGAGGAAGAAT GTACTTAGGTTTGCTCAAAACGGCAGCGCTGGAGGAAGAAT Direct Gain 0 0.941175038238684 0 0.650784373283386 prediction 0.882350076477369 Functional Gain - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65714065 chr17:65714065 nonsynonymous SNV 0.942 4 21 hm5C_associated_SNPs_132103 0 0 1 0 0 Nucleus 0 0.500231643918331 0.301568746566772 0.000463287836662607 hm5C_site_52161 DeepMRMD:0.301568746566772;iRNA_m5C:0.000463287836662607 52162 chr9 130454111 130454111 1 + T C rs376329361 130454111 + 130454091 130454131 41 TGGAGAAGGTTCTTGGCCCGTTGGACTCACACAGACCCTGT TGGAGAAGGTTCTTGGCCCGCTGGACTCACACAGACCCTGT Direct Gain 0 0.941172963337544 0 0.465183734893799 prediction 0.882345926675089 Functional Gain - STXBP1 ENSG00000136854 UTR3 Human protein_coding chr9:130454111 chr9:130454111 . . 0 21 hm5C_associated_SNPs_132104 0 0 1 1 0 Cytosol 0 0.500231643921047 0 0.000463287842093374 hm5C_site_52162 DeepMRMD:0;iRNA_m5C:0.000463287842093374 52163 chr8 1497007 1497007 1 + G C SKCM 1497007 + 1496987 1497027 41 GCCCCGCCGACAGCTGCCCCGGGGGGCGCCACCGCTGCTCG GCCCCGCCGACAGCTGCCCCCGGGGGCGCCACCGCTGCTCG Direct Gain 0 0.941158536322289 0 0.98382705450058 prediction 0.882317072644578 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1497007 chr8:1497007 nonsynonymous SNV 0.470 0 21 hm5C_associated_SNPs_132105 0 0 0 0 0 nucleolus 0 0.500231643921094 0.96765410900116 0.000463287842187743 hm5C_site_52163 DeepMRMD:0.96765410900116;iRNA_m5C:0.000463287842187743 52164 chr17 15604513 15604513 1 + G C BLCA 15604513 + 15604493 15604533 41 TCCAAGAGAAGAGCACAGAAGAGGGAGAAGTGGCTGCTCTG TCCAAGAGAAGAGCACAGAACAGGGAGAAGTGGCTGCTCTG Direct Gain 0 0.941155291940593 0 0.886909365653992 prediction 0.882310583881187 Functional Gain - ZNF286A ENSG00000187607;ENSG00000255104 CDS Human other chr17:15604513 chr17:15604513 nonsynonymous SNV 0.988 0 21 hm5C_associated_SNPs_132106 0 0 1 0 2 Nucleus 0 0.500231643994889 0.773818731307984 0.000463287989778127 hm5C_site_52164 DeepMRMD:0.773818731307984;iRNA_m5C:0.000463287989778127 52165 chr6 2766465 2766465 1 + T C rs8333 2766465 + 2766445 2766485 41 GCCACCGCCTTCGGGGCCAGTGGCGGGGGCCGCCCGCACCC GCCACCGCCTTCGGGGCCAGCGGCGGGGGCCGCCCGCACCC Direct Gain 0 0.941150982764711 0 0.941564440727234 prediction 0.882301965529421 Functional Gain - WRNIP1 ENSG00000124535 CDS Human protein_coding chr6:2766465 chr6:2766465 synonymous SNV . 0 21 hm5C_associated_SNPs_132107 0 0 1 0 0 Ribosome 0 0.500231643921093 0.883128881454468 0.000463287842185078 hm5C_site_52165 DeepMRMD:0.883128881454468;iRNA_m5C:0.000463287842185078 52166 chr17 77758204 77758204 1 + T C UCEC 77758204 + 77758184 77758224 41 TGGGGCTGTGGAGCAGAAAGTGGGGAACACAGGGGGCCCCC TGGGGCTGTGGAGCAGAAAGCGGGGAACACAGGGGGCCCCC Direct Gain 0 0.941147999192525 0 0.971473217010498 prediction 0.88229599838505 Functional Gain - CBX2 ENSG00000173894 CDS Human protein_coding chr17:77758204 chr17:77758204 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_132108 0 0 1 0 0 chromatin 0 0.500231643921093 0.942946434020996 0.0004632878421853 hm5C_site_52166 DeepMRMD:0.942946434020996;iRNA_m5C:0.0004632878421853 52167 chr13 53216649 53216649 1 + A C GBM 53216649 + 53216629 53216669 41 TGTCTAAGTCAGCGTCTCCAAAAGAGCCCGAACAGCTGAGG TGTCTAAGTCAGCGTCTCCACAAGAGCCCGAACAGCTGAGG Direct Gain 0 0.941145001806148 0 0.712482273578644 prediction 0.882290003612296 Functional Gain - HNRNPA1L2 ENSG00000139675 CDS Human protein_coding chr13:53216649 chr13:53216649 nonsynonymous SNV 0.113 2 21 hm5C_associated_SNPs_132109 0 0 0 0 0 Ribosome 0 0.500231643921092 0.424964547157288 0.000463287842184634 hm5C_site_52167 DeepMRMD:0.424964547157288;iRNA_m5C:0.000463287842184634 52168 chr13 112724354 112724354 1 + G C rs41288610 112724354 + 112724334 112724374 41 GGCCATGGATGAAGGACAAAGACCAGGGCAGGTCACGGGTT GGCCATGGATGAAGGACAAACACCAGGGCAGGTCACGGGTT Direct Gain 0 0.941131023369288 0 0.737759232521057 prediction 0.882262046738576 Functional Gain - LINC00403 ENSG00000182968 UTR3 Human protein_coding chr13:112724354 chr13:112724354 . . 0 21 hm5C_associated_SNPs_132110 0 0 0 0 0 unknown 0 0.500231645147495 0.475518465042114 0.000463290294990149 hm5C_site_52168 DeepMRMD:0.475518465042114;iRNA_m5C:0.000463290294990149 52169 chr21 46066926 46066926 1 + A G rs587598057 46066926 - 46066906 46066946 41 GCACGCAGCAGGCCTGCTGGTAGGAGGAGGAGGTGCAGCAA GCACGCAGCAGGCCTGCTGGCAGGAGGAGGAGGTGCAGCAA Direct Gain 0 0.941118657579164 0 0.931903958320618 prediction 0.882237315158328 Functional Gain - KRTAP10-11 ENSG00000243489 CDS Human protein_coding chr21:46066926 chr21:46066926 nonsynonymous SNV 0.027 0 21 hm5C_associated_SNPs_132111 0 0 0 0 0 unknown 0 0.500231643921874 0.863807916641236 0.000463287843748716 hm5C_site_52169 DeepMRMD:0.863807916641236;iRNA_m5C:0.000463287843748716 52170 chr2 150187077 150187077 1 + C G rs112631177 150187077 - 150187057 150187097 41 GCGCAGCGGGGAGAGGCGGGGGGCGGCTAGGGGCGCGCGCG GCGCAGCGGGGAGAGGCGGGCGGCGGCTAGGGGCGCGCGCG Direct Gain 0 0.941108428307542 0 0.945521235466003 prediction 0.882216856615083 Functional Gain - LYPD6 ENSG00000187123 UTR5 Human protein_coding chr2:150187077 chr2:150187077 . . 0 21 hm5C_associated_SNPs_132112 0 0 0 0 0 Cytosol 0 0.500231643921093 0.891042470932006 0.000463287842185078 hm5C_site_52170 DeepMRMD:0.891042470932006;iRNA_m5C:0.000463287842185078 52171 chr10 5242286 5242286 1 + G C rs139370478 5242286 + 5242266 5242306 41 TGCAGATGGCAGTGTGAAGAGAGAAGACATATTCTACACTT TGCAGATGGCAGTGTGAAGACAGAAGACATATTCTACACTT Direct Gain 0 0.94110186425378 0 0.411038756370544 prediction 0.882203728507561 Functional Gain - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5242286 chr10:5242286 nonsynonymous SNV 0.514 3 21 hm5C_associated_SNPs_132113 0 0 0 0 1 exosome 0 0.500224009313854 0 0.000448018627707159 hm5C_site_52171 DeepMRMD:0;iRNA_m5C:0.000448018627707159 52172 chr15 30396211 30396211 1 + G C rs563231993 30396211 + 30396191 30396231 41 ACGCCCCACCGCAACATTAAGGTGAGTCGCCGGGTGGCGGC ACGCCCCACCGCAACATTAACGTGAGTCGCCGGGTGGCGGC Direct Gain 0 0.941083098170499 0 0.399671941995621 prediction 0.882166196340999 Functional Gain - ULK4P3 ENSG00000178081 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:30396211 chr15:30396211 . . 0 21 hm5C_associated_SNPs_132114 0 0 0 0 1 unknown 0 0.500231643920829 0 0.000463287841658833 hm5C_site_52172 DeepMRMD:0;iRNA_m5C:0.000463287841658833 52173 chr3 58256713 58256713 1 + A C COAD 58256713 + 58256693 58256733 41 TCCACCTGGTAGGCACCTCCATGGGTGGCCAGGTGGCTGGG TCCACCTGGTAGGCACCTCCCTGGGTGGCCAGGTGGCTGGG Direct Gain 0 0.941077441035113 0 0.782002568244934 prediction 0.882154882070225 Functional Gain - ABHD6 ENSG00000163686 CDS Human protein_coding chr3:58256713 chr3:58256713 nonsynonymous SNV 0.999 4 21 hm5C_associated_SNPs_132115 0 0 0 0 2 Ribosome 0 0.500231643896825 0.564005136489868 0.000463287793649014 hm5C_site_52173 DeepMRMD:0.564005136489868;iRNA_m5C:0.000463287793649014 52174 chr16 89940235 89940235 1 + G C CESC 89940235 + 89940215 89940255 41 GTCCCGGGGGCGCAGGGAAGGAGGGCGTCCGAGTCAACAAC GTCCCGGGGGCGCAGGGAAGCAGGGCGTCCGAGTCAACAAC Direct Gain 0 0.941075690163266 0 0.921658635139465 prediction 0.882151380326532 Functional Gain - TCF25 ENSG00000141002 CDS Human protein_coding chr16:89940235 chr16:89940235 nonsynonymous SNV 0.074 1 21 hm5C_associated_SNPs_132116 0 0 1 0 1 Cytosol 0 0.500231772175384 0.84331727027893 0.000463544350767453 hm5C_site_52174 DeepMRMD:0.84331727027893;iRNA_m5C:0.000463544350767453 52175 chrX 152815082 152815082 1 + A G UCEC 152815082 - 152815062 152815102 41 TGTAGTGGGTGTCTCCTAGGTAGGACTGGACCACGGTCATA TGTAGTGGGTGTCTCCTAGGCAGGACTGGACCACGGTCATA Direct Gain 0 0.941075680855712 0 0.862815618515015 prediction 0.882151361711423 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152815082 chrX:152815082 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_132117 0 0 0 0 0 exosome 0 0.500231643921069 0.72563123703003 0.000463287842138671 hm5C_site_52175 DeepMRMD:0.72563123703003;iRNA_m5C:0.000463287842138671 52176 chr1 247769582 247769582 1 + A C SKCM 247769582 + 247769562 247769602 41 GCTGAGGATCAAATCAGTAGAGGCAAGGCACAAAGCCTTCA GCTGAGGATCAAATCAGTAGCGGCAAGGCACAAAGCCTTCA Direct Gain 0 0.941074012781625 0 0.388433665037155 prediction 0.882148025563249 Functional Gain - OR2G3 ENSG00000177476 CDS Human protein_coding chr1:247769582 chr1:247769582 nonsynonymous SNV 0.084 0 21 hm5C_associated_SNPs_132118 0 0 0 0 0 unknown 0 0.500231520483931 0 0.00046304096786165 hm5C_site_52176 DeepMRMD:0;iRNA_m5C:0.00046304096786165 52177 chrX 149638921 149638921 1 + C G LGG 149638921 - 149638901 149638941 41 TGAGGCTCTGGGGGCTGAATGGGGGTGGTGGTGGTGGCAGT TGAGGCTCTGGGGGCTGAATCGGGGTGGTGGTGGTGGCAGT Direct Gain 0 0.941046306627587 0 0.978975653648376 prediction 0.882092613255173 Functional Gain - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149638921 chrX:149638921 nonsynonymous SNV 0.130 3 21 hm5C_associated_SNPs_132119 0 0 0 0 0 Nucleus 0 0.500231643921191 0.957951307296752 0.000463287842381588 hm5C_site_52177 DeepMRMD:0.957951307296752;iRNA_m5C:0.000463287842381588 52178 chr6 54807801 54807801 1 + A C rs570896013 54807801 + 54807781 54807821 41 ACCTCTGCCTCCCAAGTTCAAACGATTCTCCTGCCTCAGCC ACCTCTGCCTCCCAAGTTCACACGATTCTCCTGCCTCAGCC Direct Gain 0 0.941041358009738 0 0.336085230112076 prediction 0.882082716019476 Functional Gain - FAM83B ENSG00000261116;ENSG00000168143 upstream;downstream Human other chr6:54807801 chr6:54807801 . . 0 21 hm5C_associated_SNPs_132120 0 0 0 0 0 exosome 0 0.500231643921092 0 0.000463287842184856 hm5C_site_52178 DeepMRMD:0;iRNA_m5C:0.000463287842184856 52179 chr3 194408432 194408432 1 + G C rs138951793 194408432 + 194408412 194408452 41 CGGCAGAGGGAGATCCAGCAGAGGAGGAGGCCGAGGCGCAG CGGCAGAGGGAGATCCAGCACAGGAGGAGGCCGAGGCGCAG Direct Gain 0 0.941026621588715 0 0.896524965763092 prediction 0.882053243177429 Functional Gain - FAM43A ENSG00000185112 CDS Human protein_coding chr3:194408432 chr3:194408432 nonsynonymous SNV 0.843 0 21 hm5C_associated_SNPs_132121 0 0 0 0 0 exosome 0 0.500231643719191 0.793049931526184 0.000463287438381199 hm5C_site_52179 DeepMRMD:0.793049931526184;iRNA_m5C:0.000463287438381199 52180 chr18 32400833 32400833 1 + A G rs141981161 32400833 - 32400813 32400853 41 CTCAGGCTGATCTGGGAACATGGGGTGCAAAGGTTCACGGC CTCAGGCTGATCTGGGAACACGGGGTGCAAAGGTTCACGGC Direct Gain 0 0.941025327437963 0 0.926503300666809 prediction 0.882050654875925 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32400833 chr18:32400833 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_132122 1 0 0 0 0 cytosol 0 0.500231643921093 0.853006601333618 0.000463287842185078 hm5C_site_52180 DeepMRMD:0.853006601333618;iRNA_m5C:0.000463287842185078 not provided not provided 52181 chr7 1097459 1097459 1 + T C GBM 1097459 + 1097439 1097479 41 TGTGGGCGGCGAAGTCCACGTGGCACTGCAGATCCCCTTCA TGTGGGCGGCGAAGTCCACGCGGCACTGCAGATCCCCTTCA Direct Gain 0 0.941013163501729 0 0.77642822265625 prediction 0.882026327003457 Functional Gain - GPR146 ENSG00000164849 CDS Human protein_coding chr7:1097459 chr7:1097459 nonsynonymous SNV 0.002 2 21 hm5C_associated_SNPs_132123 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921083 0.5528564453125 0.000463287842165983 hm5C_site_52181 DeepMRMD:0.5528564453125;iRNA_m5C:0.000463287842165983 52182 chr18 22241202 22241202 1 + G C rs142970939 22241202 + 22241182 22241222 41 TAGGCAGCTGCGGTTGTAGTGGGGAAACAGGCCTCTGTCTG TAGGCAGCTGCGGTTGTAGTCGGGAAACAGGCCTCTGTCTG Direct Gain 0 0.941011689985151 0 0.984770536422729 prediction 0.882023379970302 Functional Gain - LINC01915 ENSG00000265485 ncRNA_exonic Human lincRNA chr18:22241202 chr18:22241202 . . 0 21 hm5C_associated_SNPs_132124 0 0 0 0 0 unknown 0 0.500231643921092 0.969541072845458 0.000463287842184856 hm5C_site_52182 DeepMRMD:0.969541072845458;iRNA_m5C:0.000463287842184856 52183 chr6 29408476 29408476 1 + A G rs2074465 29408476 - 29408456 29408496 41 TTGCGGCGGCCCGCAACAGATGGGATCCGGAAGATGGTAAC TTGCGGCGGCCCGCAACAGACGGGATCCGGAAGATGGTAAC Direct Gain 0 0.941002725022682 0 0.87560510635376 prediction 0.882005450045364 Functional Gain - OR10C1 ENSG00000206474 CDS Human protein_coding chr6:29408476 chr6:29408476 synonymous SNV . 0 21 hm5C_associated_SNPs_132125 0 0 0 0 0 unknown 0 0.500231643921092 0.75121021270752 0.000463287842184634 hm5C_site_52183 DeepMRMD:0.75121021270752;iRNA_m5C:0.000463287842184634 52184 chr19 49912476 49912476 1 + G C BLCA 49912476 + 49912456 49912496 41 ACCTGAAGGGGCCCAGCTGAGAAGAGTGGGCTGGACCGAGC ACCTGAAGGGGCCCAGCTGACAAGAGTGGGCTGGACCGAGC Direct Gain 0 0.940998045736556 0 0.859676122665405 prediction 0.881996091473112 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49912476 chr19:49912476 nonsynonymous SNV 0.218 0 21 hm5C_associated_SNPs_132126 0 0 0 0 2 nucleolus 0 0.500231643921161 0.71935224533081 0.000463287842322968 hm5C_site_52184 DeepMRMD:0.71935224533081;iRNA_m5C:0.000463287842322968 52185 chr10 30748334 30748334 1 + G C LUSC 30748334 + 30748314 30748354 41 AGGCCCTGAACCCGCCCAGAGAGGATCAGCCACGCTGTCAG AGGCCCTGAACCCGCCCAGACAGGATCAGCCACGCTGTCAG Direct Gain 0 0.940996807911666 0 0.851722180843353 prediction 0.881993615823331 Functional Gain - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30748334 chr10:30748334 nonsynonymous SNV 0.996 4 21 hm5C_associated_SNPs_132127 0 0 0 0 1 Cytosol 0 0.500231643920005 0.703444361686706 0.000463287840010596 hm5C_site_52185 DeepMRMD:0.703444361686706;iRNA_m5C:0.000463287840010596 52186 chr18 74962447 74962447 1 + A G rs13306375 74962447 - 74962427 74962467 41 GGGGAGGGAGGGCGGGATAGTAGGCGCCGGGGGTGGCCAGG GGGGAGGGAGGGCGGGATAGCAGGCGCCGGGGGTGGCCAGG Direct Gain 0 0.940987768062039 0 0.919685959815979 prediction 0.881975536124077 Functional Gain - GALR1 ENSG00000166573 upstream Human protein_coding chr18:74962447 chr18:74962447 . . 0 21 hm5C_associated_SNPs_132128 0 0 0 0 0 exosome 0 0.500231643921094 0.839371919631958 0.000463287842187521 hm5C_site_52186 DeepMRMD:0.839371919631958;iRNA_m5C:0.000463287842187521 52187 chr19 37882402 37882402 1 + T C rs112915922 37882402 + 37882382 37882422 41 AATCACTTGAACCTGGGAAGTGGAGGTTACAGTGAGCGAAG AATCACTTGAACCTGGGAAGCGGAGGTTACAGTGAGCGAAG Direct Gain 0 0.940982720732898 0 0.730178594589233 prediction 0.881965441465797 Functional Gain - ZNF527 ENSG00000189164 UTR3 Human protein_coding chr19:37882402 chr19:37882402 . . 0 21 hm5C_associated_SNPs_132129 0 0 0 0 0 Nucleus 0 0.500231643921095 0.460357189178466 0.000463287842189519 hm5C_site_52187 DeepMRMD:0.460357189178466;iRNA_m5C:0.000463287842189519 52188 chr11 71238747 71238747 1 + C G ESCA 71238747 - 71238727 71238767 41 AGCAGGATGACCCACAGCCTGAGGAACAGCAGCAGGGCTTA AGCAGGATGACCCACAGCCTCAGGAACAGCAGCAGGGCTTA Direct Gain 0 0.940977926714082 0 0.888509213924408 prediction 0.881955853428165 Functional Gain - KRTAP5-7 ENSG00000244411 CDS Human protein_coding chr11:71238747 chr11:71238747 stopgain 0.005 0 21 hm5C_associated_SNPs_132130 0 0 0 0 0 exosome 0 0.500231668771372 0.777018427848816 0.000463337542744968 hm5C_site_52188 DeepMRMD:0.777018427848816;iRNA_m5C:0.000463337542744968 52189 chr8 8559692 8559692 1 + G C rs186100732 8559692 + 8559672 8559712 41 GCGGAGCGGCCGGGACGCCAGGAGGGAACTAGCCTAAGTGG GCGGAGCGGCCGGGACGCCACGAGGGAACTAGCCTAAGTGG Direct Gain 0 0.940971918889826 0 0.877102971076965 prediction 0.881943837779651 Functional Gain - CLDN23 ENSG00000176305 ncRNA_exonic Human other chr8:8559692 chr8:8559692 . . 0 21 hm5C_associated_SNPs_132131 0 0 0 0 0 Endoplasmic reticulum 0 0.500229217740438 0.75420594215393 0.000458435480876318 hm5C_site_52189 DeepMRMD:0.75420594215393;iRNA_m5C:0.000458435480876318 52190 chr20 21686434 21686434 1 + G C rs548440049 21686434 + 21686414 21686454 41 GCGGCGGCAGGCCCTGGAGCGGGCGGCAGCGCGCTCCGCTG GCGGCGGCAGGCCCTGGAGCCGGCGGCAGCGCGCTCCGCTG Direct Gain 0 0.940968768321006 0 0.966648936271667 prediction 0.881937536642012 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21686434 chr20:21686434 synonymous SNV . 0 21 hm5C_associated_SNPs_132132 0 0 0 0 0 unknown 0 0.500231643909827 0.933297872543334 0.000463287819653102 hm5C_site_52190 DeepMRMD:0.933297872543334;iRNA_m5C:0.000463287819653102 52191 chr18 47117174 47117174 1 + T C rs3744843 47117174 + 47117154 47117194 41 TGTGTAAGCAGCTGGGTGCCTGGGGCCTCTCGTGCACACTG TGTGTAAGCAGCTGGGTGCCCGGGGCCTCTCGTGCACACTG Direct Gain 0 0.940956777971461 0 0.903439819812775 prediction 0.881913555942921 Functional Gain - LIPG ENSG00000101670 UTR3 Human protein_coding chr18:47117174 chr18:47117174 . . 0 21 hm5C_associated_SNPs_132133 0 0 0 0 0 Nucleus 0 0.500231643921092 0.80687963962555 0.000463287842184856 hm5C_site_52191 DeepMRMD:0.80687963962555;iRNA_m5C:0.000463287842184856 52192 chr17 74943984 74943984 1 + A G SKCM 74943984 - 74943964 74944004 41 CCACTCGAGGTGGGTGGCATTGGGGGCCAGGACAAAGGGGC CCACTCGAGGTGGGTGGCATCGGGGGCCAGGACAAAGGGGC Direct Gain 0 0.940947633106792 0 0.981625437736511 prediction 0.881895266213585 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74943984 chr17:74943984 nonsynonymous SNV 0.885 3 21 hm5C_associated_SNPs_132134 0 0 0 0 0 exosome 0 0.500231643897157 0.963250875473022 0.000463287794313594 hm5C_site_52192 DeepMRMD:0.963250875473022;iRNA_m5C:0.000463287794313594 52193 chr3 100148663 100148663 1 + G C LUAD 100148663 + 100148643 100148683 41 AGCTGGAGAGAGGAGGATCAGAGAGGACTCCGGGAACGCCA AGCTGGAGAGAGGAGGATCACAGAGGACTCCGGGAACGCCA Direct Gain 0 0.940943633979466 0 0.762510657310486 prediction 0.881887267958932 Functional Gain - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100148663 chr3:100148663 nonsynonymous SNV 0.964 1 21 hm5C_associated_SNPs_132135 0 0 1 1 1 chromatin 0 0.500231643921092 0.525021314620972 0.000463287842184856 hm5C_site_52193 DeepMRMD:0.525021314620972;iRNA_m5C:0.000463287842184856 52194 chr4 115519826 115519826 1 + A G rs11098260 115519826 - 115519806 115519846 41 CCTGCGTGCGGCGAGCAGAGTCGGAGCGCGCCGCTGCCCTT CCTGCGTGCGGCGAGCAGAGCCGGAGCGCGCCGCTGCCCTT Direct Gain 0 0.940933838289132 0 0.437706738710403 prediction 0.881867676578264 Functional Gain - UGT8 ENSG00000174607 UTR5 Human protein_coding chr4:115519826 chr4:115519826 . . 0 21 hm5C_associated_SNPs_132136 0 0 0 0 0 Ribosome 0 0.500231643860167 0 0.000463287720334993 hm5C_site_52194 DeepMRMD:0;iRNA_m5C:0.000463287720334993 52195 chr1 152659386 152659386 1 + A G UCEC 152659386 - 152659366 152659406 41 GGGACACTTAGGTGGACATTTTGGGGTACACTTGGGAGGAC GGGACACTTAGGTGGACATTCTGGGGTACACTTGGGAGGAC Direct Gain 0 0.940931183047109 0 0.892165780067444 prediction 0.881862366094218 Functional Gain - LCE2B ENSG00000159455 CDS Human protein_coding chr1:152659386 chr1:152659386 nonsynonymous SNV 0.079 3 21 hm5C_associated_SNPs_132137 0 0 0 0 0 unknown 0 0.500231693239577 0.784331560134888 0.000463386479153227 hm5C_site_52195 DeepMRMD:0.784331560134888;iRNA_m5C:0.000463386479153227 52196 chr17 73125047 73125047 1 + C G rs139544831 73125047 - 73125027 73125067 41 GCGGGCCTCGGCCACCTGGCGGGGGGAGCAGAAGTCCTCCA GCGGGCCTCGGCCACCTGGCCGGGGGAGCAGAAGTCCTCCA Direct Gain 0 0.940915098900984 0 0.955173015594482 prediction 0.881830197801968 Functional Gain - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73125047 chr17:73125047 nonsynonymous SNV 0.130 0 21 hm5C_associated_SNPs_132138 0 0 0 0 0 Cytosol 0 0.500231643921092 0.910346031188964 0.000463287842184856 hm5C_site_52196 DeepMRMD:0.910346031188964;iRNA_m5C:0.000463287842184856 52197 chr1 1375207 1375207 1 + T C rs140247431 1375207 + 1375187 1375227 41 CGAGAGGGCCGGCGCCTACCTGAGGGCCCCTGTGTCCCGAA CGAGAGGGCCGGCGCCTACCCGAGGGCCCCTGTGTCCCGAA Direct Gain 0 0.940894243790007 0 0.922277808189392 prediction 0.881788487580013 Functional Gain - VWA1 ENSG00000179403 UTR3 Human protein_coding chr1:1375207 chr1:1375207 . . 0 21 hm5C_associated_SNPs_132139 0 0 1 0 0 Ribosome 0 0.500231643921092 0.844555616378784 0.000463287842184856 hm5C_site_52197 DeepMRMD:0.844555616378784;iRNA_m5C:0.000463287842184856 52198 chr1 230804444 230804444 1 + T C UCEC 230804444 + 230804424 230804464 41 CCCTTTTGACTGGACAAATTTTGGAGAGAATTGCCACAGAA CCCTTTTGACTGGACAAATTCTGGAGAGAATTGCCACAGAA Direct Gain 0 0.940885501547538 0 0.802412033081055 prediction 0.881771003095077 Functional Gain - COG2 ENSG00000135775 CDS Human protein_coding chr1:230804444 chr1:230804444 synonymous SNV . 0 21 hm5C_associated_SNPs_132140 0 0 1 0 2 Cytosol 0 0.500231644051344 0.60482406616211 0.000463288102688697 hm5C_site_52198 DeepMRMD:0.60482406616211;iRNA_m5C:0.000463288102688697 52199 chrX 11784788 11784788 1 + T C rs146886068 11784788 + 11784768 11784808 41 TGCCTCGCGGGCTCAGTGAGTTAGGAAGTCAGCAGCAGGGG TGCCTCGCGGGCTCAGTGAGCTAGGAAGTCAGCAGCAGGGG Direct Gain 0 0.940878719263848 0 0.259391784667969 prediction 0.881757438527697 Functional Gain - MSL3 ENSG00000005302 UTR3 Human protein_coding chrX:11784788 chrX:11784788 . . 0 21 hm5C_associated_SNPs_132141 0 0 0 0 0 Cytosol 0 0.50023168100585 0 0.000463362011700941 hm5C_site_52199 DeepMRMD:0;iRNA_m5C:0.000463362011700941 52200 chr12 124155867 124155867 1 + T C UCEC 124155867 + 124155847 124155887 41 GAGGCTTCTGTGGGGGGACCTGGGTGTGTACGGCGCGGCAG GAGGCTTCTGTGGGGGGACCCGGGTGTGTACGGCGCGGCAG Direct Gain 0 0.9408723219226 0 0.943708181381226 prediction 0.881744643845201 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124155867 chr12:124155867 nonsynonymous SNV 0.848 1 21 hm5C_associated_SNPs_132142 0 0 1 0 1 Nucleus 0 0.500231566688509 0.887416362762452 0.000463133377018865 hm5C_site_52200 DeepMRMD:0.887416362762452;iRNA_m5C:0.000463133377018865 52201 chr11 111386809 111386809 1 + G C BLCA 111386809 + 111386789 111386829 41 CCCTAAAGATACAGGAATCTGAGGAGAAAGTAAAGTATCTC CCCTAAAGATACAGGAATCTCAGGAGAAAGTAAAGTATCTC Direct Gain 0 0.940869290163858 0 0.814251899719238 prediction 0.881738580327717 Functional Gain - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111386809 chr11:111386809 nonsynonymous SNV 0.946 1 21 hm5C_associated_SNPs_132143 0 0 0 0 2 Nucleus 0 0.500231643921137 0.628503799438476 0.00046328784227323 hm5C_site_52201 DeepMRMD:0.628503799438476;iRNA_m5C:0.00046328784227323 52202 chr2 45169367 45169367 1 + G C LUAD 45169367 + 45169347 45169387 41 GGAACGGTGCGGGAGGCGGCGGCGGCGCGGGAGGCGGCAGC GGAACGGTGCGGGAGGCGGCCGCGGCGCGGGAGGCGGCAGC Direct Gain 0 0.940840637761064 0 0.784160137176514 prediction 0.881681275522128 Functional Gain - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45169367 chr2:45169367 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_132144 0 0 0 0 0 exosome 0 0.500231643915419 0.568320274353028 0.000463287830838821 hm5C_site_52202 DeepMRMD:0.568320274353028;iRNA_m5C:0.000463287830838821 52203 chr22 37964430 37964430 1 + C G CESC 37964430 - 37964410 37964450 41 TGGGGGTTGCGGCAGGTGCTGAGGGGTTTGCAGCAGGCGCT TGGGGGTTGCGGCAGGTGCTCAGGGGTTTGCAGCAGGCGCT Direct Gain 0 0.94083726575447 0 0.958330452442169 prediction 0.881674531508941 Functional Gain - CDC42EP1 ENSG00000128283 CDS Human protein_coding chr22:37964430 chr22:37964430 stopgain 0.003 0 21 hm5C_associated_SNPs_132145 0 0 0 0 0 Ribosome 0 0.500231643921092 0.916660904884338 0.000463287842184856 hm5C_site_52203 DeepMRMD:0.916660904884338;iRNA_m5C:0.000463287842184856 52204 chr5 147499606 147499606 1 + A C HNSC 147499606 + 147499586 147499626 41 GTTTAGAAGCCAAATGAAAAATGGAAAACTCATCTGCACTC GTTTAGAAGCCAAATGAAAACTGGAAAACTCATCTGCACTC Direct Gain 0 0.940823057081605 0 0.782067537307739 prediction 0.881646114163211 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147499606 chr5:147499606 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_132146 0 0 0 0 2 Endoplasmic reticulum 0 0.500232286113602 0.564135074615478 0.000464572227203419 hm5C_site_52204 DeepMRMD:0.564135074615478;iRNA_m5C:0.000464572227203419 52205 chr8 11400826 11400826 1 + A G BRCA 11400826 - 11400806 11400846 41 AGTGGCGGGGCGTCCTTGTCTTGGGCGCTGACCTTCAGGGG AGTGGCGGGGCGTCCTTGTCCTGGGCGCTGACCTTCAGGGG Direct Gain 0 0.940809787046021 0 0.871592223644257 prediction 0.881619574092043 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11400826 chr8:11400826 synonymous SNV . 0 21 hm5C_associated_SNPs_132147 0 0 0 0 0 exosome 0 0.500231643921081 0.743184447288514 0.000463287842162874 hm5C_site_52205 DeepMRMD:0.743184447288514;iRNA_m5C:0.000463287842162874 52206 chr1 207785340 207785340 1 + C G UCEC 207785340 - 207785320 207785360 41 TGCCCCAAGCTGGAGATTAAGTGGAAGTAGCACACGGCCAT TGCCCCAAGCTGGAGATTAACTGGAAGTAGCACACGGCCAT Direct Gain 0 0.940798098418634 0 0.757277965545654 prediction 0.881596196837268 Functional Gain - CR1 ENSG00000203710 CDS Human protein_coding chr1:207785340 chr1:207785340 nonsynonymous SNV 0.189 2 21 hm5C_associated_SNPs_132148 0 0 0 0 0 Nucleus 0 0.500231644037293 0.514555931091308 0.000463288074585844 hm5C_site_52206 DeepMRMD:0.514555931091308;iRNA_m5C:0.000463288074585844 52207 chr7 2703073 2703073 1 + G C rs190822652 2703073 + 2703053 2703093 41 GGAATATGGGAGGGCAGAGTGGGGAGGGGAGTCCATGGGCC GGAATATGGGAGGGCAGAGTCGGGAGGGGAGTCCATGGGCC Direct Gain 0 0.940793973680994 0 0.94806694984436 prediction 0.881587947361987 Functional Gain - TTYH3 ENSG00000136295 UTR3 Human protein_coding chr7:2703073 chr7:2703073 . . 0 21 hm5C_associated_SNPs_132149 0 0 1 0 0 Ribosome 0 0.500231643921092 0.89613389968872 0.000463287842183524 hm5C_site_52207 DeepMRMD:0.89613389968872;iRNA_m5C:0.000463287842183524 52208 chr11 60701070 60701070 1 + G C rs545863764 60701070 + 60701050 60701090 41 AAGGAGAGCCGGGGCGCCCGGGGGGTGCGAGTGGACTTCTG AAGGAGAGCCGGGGCGCCCGCGGGGTGCGAGTGGACTTCTG Direct Gain 0 0.940791026888849 0 0.95235276222229 prediction 0.881582053777697 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60701070 chr11:60701070 synonymous SNV . 0 21 hm5C_associated_SNPs_132150 0 0 0 0 1 Ribosome 0 0.500231643915246 0.90470552444458 0.000463287830492654 hm5C_site_52208 DeepMRMD:0.90470552444458;iRNA_m5C:0.000463287830492654 52209 chr1 26156166 26156166 1 + T G UCEC 26156166 - 26156146 26156186 41 CATTCAGGGCTGGCAGAACAAAGCAGGGGGACTGATGGAAG CATTCAGGGCTGGCAGAACACAGCAGGGGGACTGATGGAAG Direct Gain 0 0.940773393388976 0 0.613929271697998 prediction 0.881546786777951 Functional Gain - MTFR1L ENSG00000117640 CDS Human protein_coding chr1:26156166 chr1:26156166 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_132151 0 0 0 0 0 Ribosome 0 0.500232429889205 0.227858543395996 0.000464859778409155 hm5C_site_52209 DeepMRMD:0.227858543395996;iRNA_m5C:0.000464859778409155 52210 chr9 95840272 95840272 1 + A G KIRC 95840272 - 95840252 95840292 41 TCATGAGGCCACCGTACCTGTTGGAGCGCCGCCGCTTGCTC TCATGAGGCCACCGTACCTGCTGGAGCGCCGCCGCTTGCTC Direct Gain 0 0.940771700880122 0 0.799676060676575 prediction 0.881543401760244 Functional Gain - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95840272 chr9:95840272 nonsynonymous SNV 0.070 0 21 hm5C_associated_SNPs_132152 0 0 0 0 0 Endoplasmic reticulum 0 0.500231665575991 0.59935212135315 0.000463331151982382 hm5C_site_52210 DeepMRMD:0.59935212135315;iRNA_m5C:0.000463331151982382 52211 chr19 55899444 55899444 1 + G C OV 55899444 + 55899424 55899464 41 GGGGTTTGGGGATCAGGCTTGGGGAGACTGGCCAGTGCTGT GGGGTTTGGGGATCAGGCTTCGGGAGACTGGCCAGTGCTGT Direct Gain 0 0.940756314043533 0 0.967136740684509 prediction 0.881512628087065 Functional Gain - RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899444 chr19:55899444 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_132153 0 0 1 0 0 Cytosol 0 0.500231643921092 0.934273481369018 0.000463287842184856 hm5C_site_52211 DeepMRMD:0.934273481369018;iRNA_m5C:0.000463287842184856 52212 chr2 152266473 152266473 1 + T C rs2290368 152266473 + 152266453 152266493 41 CGTGAGTAAACAGCCGGAGCTGGGAAAGTCGAGCTCTGGCA CGTGAGTAAACAGCCGGAGCCGGGAAAGTCGAGCTCTGGCA Direct Gain 0 0.94074724179302 0 0.887060642242432 prediction 0.881494483586041 Functional Gain - RIF1 ENSG00000080345 CDS Human protein_coding chr2:152266473 chr2:152266473 unknown . 0 21 hm5C_associated_SNPs_132154 0 0 1 0 1 Nucleus 0 0.500231684471481 0.774121284484864 0.000463368942962283 hm5C_site_52212 DeepMRMD:0.774121284484864;iRNA_m5C:0.000463368942962283 52213 chr3 119133135 119133135 1 + C G rs186621177 119133135 - 119133115 119133155 41 CTCCTCCAGAGGAGTTGGAGGGGGAGGAGCAGGTGGGAGTG CTCCTCCAGAGGAGTTGGAGCGGGAGGAGCAGGTGGGAGTG Direct Gain 0 0.940737551072724 0 0.977058529853821 prediction 0.881475102145449 Functional Gain - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119133135 chr3:119133135 nonsynonymous SNV 0.994 4 21 hm5C_associated_SNPs_132155 1 0 0 0 0 cytosol 0 0.500231643921092 0.954117059707642 0.000463287842184856 hm5C_site_52213 DeepMRMD:0.954117059707642;iRNA_m5C:0.000463287842184856 Adams-Oliver syndrome Adams-Oliver syndrome 52214 chr6 79944355 79944355 1 + T G rs9361504 79944355 - 79944335 79944375 41 CTGCGCGTGAGCAGCTGCAGAGGCAGAGGCAGCATCCAGCG CTGCGCGTGAGCAGCTGCAGCGGCAGAGGCAGCATCCAGCG Direct Gain 0 0.940728854646818 0 0.426091581583023 prediction 0.881457709293635 Functional Gain - HMGN3-AS1 ENSG00000270362 ncRNA_exonic Human antisense chr6:79944355 chr6:79944355 . . 0 21 hm5C_associated_SNPs_132156 0 0 1 0 1 unknown 0 0.500231642785764 0 0.000463285571527638 hm5C_site_52214 DeepMRMD:0;iRNA_m5C:0.000463285571527638 52215 chr16 89390981 89390981 1 + T C rs75355001 89390981 + 89390961 89391001 41 AGGCCGACGAACCCTCCATCTGGGGGGGCATGATCTCATCA AGGCCGACGAACCCTCCATCCGGGGGGGCATGATCTCATCA Direct Gain 0 0.940725314212705 0 0.933839678764343 prediction 0.88145062842541 Functional Gain - LOC100287036 ENSG00000261253 ncRNA_exonic Human antisense chr16:89390981 chr16:89390981 . . 0 21 hm5C_associated_SNPs_132157 0 0 0 0 0 unknown 0 0.500231716367336 0.867679357528686 0.000463432734672642 hm5C_site_52215 DeepMRMD:0.867679357528686;iRNA_m5C:0.000463432734672642 52216 chr1 171080001 171080001 1 + T C LAML 171080001 + 171079981 171080021 41 GTCTGGGACAATGGTTATCCTTGGGACATGCTGCTCGTCAC GTCTGGGACAATGGTTATCCCTGGGACATGCTGCTCGTCAC Direct Gain 0 0.940701922445142 0 0.862495899200439 prediction 0.881403844890283 Functional Gain - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171080001 chr1:171080001 synonymous SNV . 0 21 hm5C_associated_SNPs_132158 0 0 0 0 1 exosome 0 0.500231224834075 0.724991798400878 0.000462449668149123 hm5C_site_52216 DeepMRMD:0.724991798400878;iRNA_m5C:0.000462449668149123 52217 chr1 203015095 203015095 1 + A C rs111721656 203015095 + 203015075 203015115 41 TGGAGAATGAGCTGGCCAACAAGGAGTCCCTGCACCGCCAG TGGAGAATGAGCTGGCCAACCAGGAGTCCCTGCACCGCCAG Direct Gain 0 0.940689641277371 0 0.945356965065002 prediction 0.881379282554742 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203015095 chr1:203015095 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_132159 0 0 1 0 1 chromatin 0 0.500231644986631 0.890713930130004 0.000463289973261949 hm5C_site_52217 DeepMRMD:0.890713930130004;iRNA_m5C:0.000463289973261949 52218 chr1 206327510 206327510 1 + T C rs61742539 206327510 + 206327490 206327530 41 GCGGGGAGCGAGCTGATTTTTGGAGGCTACGACCACTCCCA GCGGGGAGCGAGCTGATTTTCGGAGGCTACGACCACTCCCA Direct Gain 0 0.940680703979371 0 0.970003843307495 prediction 0.881361407958742 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206327510 chr1:206327510 synonymous SNV . 0 21 hm5C_associated_SNPs_132160 0 0 0 0 2 Endoplasmic reticulum 0 0.500231643921092 0.94000768661499 0.000463287842184856 hm5C_site_52218 DeepMRMD:0.94000768661499;iRNA_m5C:0.000463287842184856 52219 chr11 57982393 57982393 1 + T C rs367667097 57982393 + 57982373 57982413 41 ATTGGGAACGGGCTCATCATTGTGGCTATCAGCTTGGATAC ATTGGGAACGGGCTCATCATCGTGGCTATCAGCTTGGATAC Direct Gain 0 0.940678157433502 0 0.106324851512909 prediction 0.881356314867004 Functional Gain - OR1S1 ENSG00000172774 CDS Human other chr11:57982393 chr11:57982393 synonymous SNV . 0 21 hm5C_associated_SNPs_132161 0 0 0 0 0 unknown 0 0.500231643919501 0 0.000463287839001181 hm5C_site_52219 DeepMRMD:0;iRNA_m5C:0.000463287839001181 52220 chrX 71360504 71360504 1 + A G KIRC 71360504 - 71360484 71360524 41 GTCTTCCTCCAGGGTGATGATGGGGCTGAGAGGCAGCCTTG GTCTTCCTCCAGGGTGATGACGGGGCTGAGAGGCAGCCTTG Direct Gain 0 0.940675384115785 0 0.924378573894501 prediction 0.88135076823157 Functional Gain - NHSL2 ENSG00000204131 CDS Human protein_coding chrX:71360504 chrX:71360504 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_132162 0 0 0 0 0 exosome 0 0.500231643921093 0.848757147789002 0.000463287842185078 hm5C_site_52220 DeepMRMD:0.848757147789002;iRNA_m5C:0.000463287842185078 52221 chr19 13919937 13919937 1 + C G BLCA 13919937 - 13919917 13919957 41 TGCAGGAACTGCTCGGTCATGAGAATCAGCATGCGCGCCCC TGCAGGAACTGCTCGGTCATCAGAATCAGCATGCGCGCCCC Direct Gain 0 0.940671505907651 0 0.904217600822449 prediction 0.881343011815301 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13919937 chr19:13919937 synonymous SNV . 0 21 hm5C_associated_SNPs_132163 0 0 0 0 0 chromatin 0 0.500231643921327 0.808435201644898 0.000463287842654037 hm5C_site_52221 DeepMRMD:0.808435201644898;iRNA_m5C:0.000463287842654037 52222 chr5 176073039 176073039 1 + T C rs185477030 176073039 + 176073019 176073059 41 CGCCACTGAGCCTCATTACTTTGGGGGATGGGGCGGGACTG CGCCACTGAGCCTCATTACTCTGGGGGATGGGGCGGGACTG Direct Gain 0 0.940660763823021 0 0.947647094726562 prediction 0.881321527646041 Functional Gain - EIF4E1B ENSG00000175766 UTR3 Human protein_coding chr5:176073039 chr5:176073039 . . 0 21 hm5C_associated_SNPs_132164 0 0 0 0 0 unknown 0 0.500231643921092 0.895294189453124 0.000463287842184856 hm5C_site_52222 DeepMRMD:0.895294189453124;iRNA_m5C:0.000463287842184856 52223 chr16 863705 863705 1 + G C rs200432009 863705 + 863685 863725 41 CGCAGGACCGCCCCGCCGCGGAGGACGGCCAGCCCCGAACC CGCAGGACCGCCCCGCCGCGCAGGACGGCCAGCCCCGAACC Direct Gain 0 0.940652957087789 0 0.895758628845215 prediction 0.881305914175579 Functional Gain - PRR25 ENSG00000167945 CDS Human protein_coding chr16:863705 chr16:863705 synonymous SNV . 0 21 hm5C_associated_SNPs_132165 0 0 0 0 0 exosome 0 0.500231645936951 0.79151725769043 0.00046329187390115 hm5C_site_52223 DeepMRMD:0.79151725769043;iRNA_m5C:0.00046329187390115 52224 chr21 46711726 46711726 1 + A G rs577044740 46711726 - 46711706 46711746 41 GCAGTGCTGTGGGTCCCCGATGGGGGGCGAGGGCTGCAGTG GCAGTGCTGTGGGTCCCCGACGGGGGGCGAGGGCTGCAGTG Direct Gain 0 0.940631261484341 0 0.972774267196655 prediction 0.881262522968682 Functional Gain - LOC642852 ENSG00000215447 downstream Human processed_transcript chr21:46711726 chr21:46711726 . . 0 21 hm5C_associated_SNPs_132166 0 0 0 0 0 unknown 0 0.500231643921092 0.94554853439331 0.000463287842184856 hm5C_site_52224 DeepMRMD:0.94554853439331;iRNA_m5C:0.000463287842184856 52225 chr3 64084932 64084932 1 + G C HNSC 64084932 + 64084912 64084952 41 ACTCTGAAGAGGAGGAGCAGGTGGAACACCAATCATACTCG ACTCTGAAGAGGAGGAGCAGCTGGAACACCAATCATACTCG Direct Gain 0 0.940623286337779 0 0.858066201210022 prediction 0.881246572675557 Functional Gain - PRICKLE2 ENSG00000163637 CDS Human protein_coding chr3:64084932 chr3:64084932 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_132167 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643683328 0.716132402420044 0.000463287366656129 hm5C_site_52225 DeepMRMD:0.716132402420044;iRNA_m5C:0.000463287366656129 52226 chr9 82335048 82335048 1 + T C HNSC 82335048 + 82335028 82335068 41 AAGCCAGTACTTTGTCCATTTGGGACCTGGCGGCTCCAACC AAGCCAGTACTTTGTCCATTCGGGACCTGGCGGCTCCAACC Direct Gain 0 0.940619941738554 0 0.953619778156281 prediction 0.881239883477108 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82335048 chr9:82335048 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_132168 0 0 1 0 1 Endoplasmic reticulum 0 0.500231643921092 0.907239556312562 0.000463287842184856 hm5C_site_52226 DeepMRMD:0.907239556312562;iRNA_m5C:0.000463287842184856 52227 chr4 206477 206477 1 + T C ESCA 206477 + 206457 206497 41 CCTCAGGGAGGCCTCAGTGATTCGGCCACAGCCTCAGCCTC CCTCAGGGAGGCCTCAGTGACTCGGCCACAGCCTCAGCCTC Direct Gain 0 0.940619135876107 0 0.699337959289551 prediction 0.881238271752213 Functional Gain - ZNF876P ENSG00000198155 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:206477 chr4:206477 . . 0 21 hm5C_associated_SNPs_132169 0 0 0 0 1 unknown 0 0.500231645975495 0.398675918579102 0.000463291950989264 hm5C_site_52227 DeepMRMD:0.398675918579102;iRNA_m5C:0.000463291950989264 52228 chr19 30433560 30433560 1 + G C PAAD 30433560 + 30433540 30433580 41 ATGTGGCGCGGCTGCGCGAGGAGCAGGAAAAGGTAACTAGC ATGTGGCGCGGCTGCGCGAGCAGCAGGAAAAGGTAACTAGC Direct Gain 0 0.940618027510569 0 0.505591750144958 prediction 0.881236055021139 Functional Gain - URI1 ENSG00000105176 CDS Human protein_coding chr19:30433560 chr19:30433560 nonsynonymous SNV 0.994 0 21 hm5C_associated_SNPs_132170 0 0 1 0 1 Cytosol 0 0.500231691266467 0.0111835002899161 0.000463382532933654 hm5C_site_52228 DeepMRMD:0.0111835002899161;iRNA_m5C:0.000463382532933654 52229 chr9 100362599 100362599 1 + T C rs9539 100362599 + 100362579 100362619 41 TGCTGGATATGCAGAAATGATAGGAAAAAAACCAATGGTGA TGCTGGATATGCAGAAATGACAGGAAAAAAACCAATGGTGA Direct Gain 0 0.940617485339717 0 0.738921940326691 prediction 0.881234970679433 Functional Gain - TMOD1;TSTD2 ENSG00000136842;ENSG00000136925 UTR3 Human other chr9:100362599 chr9:100362599 . . 0 21 hm5C_associated_SNPs_132171 0 0 0 1 0 unknown 0 0.500231643921092 0.477843880653382 0.000463287842183524 hm5C_site_52229 DeepMRMD:0.477843880653382;iRNA_m5C:0.000463287842183524 52230 chr1 11082344 11082344 1 + G C BLCA 11082344 + 11082324 11082364 41 GGGTGGATTTGGTAATAGCAGAGGGGGTGGAGCTGGTTTGG GGGTGGATTTGGTAATAGCACAGGGGGTGGAGCTGGTTTGG Direct Gain 0 0.940611918632202 0 0.815621614456177 prediction 0.881223837264403 Functional Gain - TARDBP ENSG00000120948 CDS Human protein_coding chr1:11082344 chr1:11082344 nonsynonymous SNV 0.999 3 21 hm5C_associated_SNPs_132172 0 0 1 0 0 Cytosol 0 0.500231643921248 0.631243228912354 0.000463287842495275 hm5C_site_52230 DeepMRMD:0.631243228912354;iRNA_m5C:0.000463287842495275 52231 chr11 64087313 64087313 1 + T C COAD 64087313 + 64087293 64087333 41 GGTGTGCTGTTTGGAGTTCCTGGGGCCTTCACCCCTGGATG GGTGTGCTGTTTGGAGTTCCCGGGGCCTTCACCCCTGGATG Direct Gain 0 0.940600773638281 0 0.924065232276917 prediction 0.881201547276563 Functional Gain - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64087313 chr11:64087313 synonymous SNV . 0 21 hm5C_associated_SNPs_132173 0 0 1 1 1 Cytosol 0 0.500231643921092 0.848130464553834 0.000463287842184856 hm5C_site_52231 DeepMRMD:0.848130464553834;iRNA_m5C:0.000463287842184856 52232 chr3 190321985 190321985 1 + A G CESC 190321985 - 190321965 190322005 41 TTCAAAGAGTGGGCACTTGATGCGAGCTGGCTCATCTTCAA TTCAAAGAGTGGGCACTTGACGCGAGCTGGCTCATCTTCAA Direct Gain 0 0.940597498318844 0 0.710023164749146 prediction 0.881194996637689 Functional Gain - IL1RAP ENSG00000196083 CDS Human protein_coding chr3:190321985 chr3:190321985 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_132174 0 0 0 0 0 Endoplasmic reticulum 0 0.500231606344654 0.420046329498292 0.000463212689308712 hm5C_site_52232 DeepMRMD:0.420046329498292;iRNA_m5C:0.000463212689308712 52233 chr7 4794986 4794986 1 + A G LIHC 4794986 - 4794966 4795006 41 CTTTGTCGGCCGTCCGGTAGTAGGGGTAATGCTTGGTGATG CTTTGTCGGCCGTCCGGTAGCAGGGGTAATGCTTGGTGATG Direct Gain 0 0.940596925687921 0 0.774618089199066 prediction 0.881193851375843 Functional Gain - FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4794986 chr7:4794986 nonsynonymous SNV 0.978 5 21 hm5C_associated_SNPs_132175 0 0 0 0 0 Endoplasmic reticulum 0 0.500310853887532 0.549236178398132 0.000621707775064539 hm5C_site_52233 DeepMRMD:0.549236178398132;iRNA_m5C:0.000621707775064539 52234 chr4 8230236 8230236 1 + G C LIHC 8230236 + 8230216 8230256 41 TGTTCTCGAGGCTGCCCCTTGGGGAGTGTGGCCGGGACTTC TGTTCTCGAGGCTGCCCCTTCGGGAGTGTGGCCGGGACTTC Direct Gain 0 0.940581003452153 0 0.969592809677124 prediction 0.881162006904307 Functional Gain - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8230236 chr4:8230236 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_132176 0 0 0 0 0 cytosol 0 0.500231643920136 0.939185619354248 0.00046328784027283 hm5C_site_52234 DeepMRMD:0.939185619354248;iRNA_m5C:0.00046328784027283 52235 chr1 33236015 33236015 1 + C G BRCA 33236015 - 33235995 33236035 41 AGTGGCTCCAGGTGTCACTGGAGGAGGATGGGTGGCGGCTG AGTGGCTCCAGGTGTCACTGCAGGAGGATGGGTGGCGGCTG Direct Gain 0 0.940552659470621 0 0.918659389019012 prediction 0.881105318941241 Functional Gain - KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33236015 chr1:33236015 nonsynonymous SNV 1.000 4 21 hm5C_associated_SNPs_132177 0 0 0 0 0 Ribosome 0 0.500231716635812 0.837318778038024 0.000463433271624902 hm5C_site_52235 DeepMRMD:0.837318778038024;iRNA_m5C:0.000463433271624902 52236 chr16 69149097 69149097 1 + A G rs2232232 69149097 - 69149077 69149117 41 CGGGCGATGATGGCCAGATATAGCATGAGGAGGGCCACCCA CGGGCGATGATGGCCAGATACAGCATGAGGAGGGCCACCCA Direct Gain 0 0.940549450793004 0 0.780492424964905 prediction 0.881098901586008 Functional Gain - HAS3 ENSG00000103044 CDS Human protein_coding chr16:69149097 chr16:69149097 synonymous SNV . 0 21 hm5C_associated_SNPs_132178 0 0 0 0 0 nucleus 0 0.500231643921092 0.56098484992981 0.000463287842184856 hm5C_site_52236 DeepMRMD:0.56098484992981;iRNA_m5C:0.000463287842184856 52237 chr2 172600667 172600667 1 + T C UVM 172600667 + 172600647 172600687 41 GTGTGGATGGCATGGGGAGATTGGATTTGTGGAATCTCAAT GTGTGGATGGCATGGGGAGACTGGATTTGTGGAATCTCAAT Direct Gain 0 0.940543291205002 0 0.717150628566742 prediction 0.881086582410005 Functional Gain - DYNC1I2 ENSG00000077380 CDS Human protein_coding chr2:172600667 chr2:172600667 synonymous SNV . 0 21 hm5C_associated_SNPs_132179 0 0 0 0 1 Cytosol 0 0.500231660790989 0.434301257133484 0.000463321581978482 hm5C_site_52237 DeepMRMD:0.434301257133484;iRNA_m5C:0.000463321581978482 52238 chr1 7840599 7840599 1 + T C rs114023518 7840599 + 7840579 7840619 41 TGCATGGGGGTTAGAGAAGGTTTGAGGTAGACTCTGACCGT TGCATGGGGGTTAGAGAAGGCTTGAGGTAGACTCTGACCGT Direct Gain 0 0.940513543324162 0 0.232115536928177 prediction 0.881027086648323 Functional Gain - VAMP3 ENSG00000049245 UTR3 Human protein_coding chr1:7840599 chr1:7840599 . . 0 21 hm5C_associated_SNPs_132180 0 0 1 1 0 Ribosome 0 0.500231643921092 0 0.000463287842184856 hm5C_site_52238 DeepMRMD:0;iRNA_m5C:0.000463287842184856 52239 chr7 2394746 2394746 1 + T C rs9690787 2394746 + 2394726 2394766 41 TCGCGGAGGCCGGGCCGGAGTCCGAGGTGAGGACCGAGCCG TCGCGGAGGCCGGGCCGGAGCCCGAGGTGAGGACCGAGCCG Direct Gain 0 0.940483991834373 0 0.53077095746994 prediction 0.880967983668747 Functional Gain - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2394746 chr7:2394746 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_132181 0 0 1 0 1 Ribosome 0 0.500231643921092 0.0615419149398799 0.000463287842184856 hm5C_site_52239 DeepMRMD:0.0615419149398799;iRNA_m5C:0.000463287842184856 52240 chr22 29837781 29837781 1 + T G GBM 29837781 - 29837761 29837801 41 AATCCACGCTCTGTGGTCAGATGGATCCTCCCTTTGCGGTG AATCCACGCTCTGTGGTCAGCTGGATCCTCCCTTTGCGGTG Direct Gain 0 0.940477921757735 0 0.803273916244507 prediction 0.88095584351547 Functional Gain - RFPL1 ENSG00000128250 CDS Human protein_coding chr22:29837781 chr22:29837781 nonsynonymous SNV 0.004 0 21 hm5C_associated_SNPs_132182 0 0 0 0 0 exosome 0 0.500231643921094 0.606547832489014 0.000463287842188187 hm5C_site_52240 DeepMRMD:0.606547832489014;iRNA_m5C:0.000463287842188187 52241 chr3 147128322 147128322 1 + C G BLCA 147128322 - 147128302 147128342 41 TCGTGAAGCCCGGGGAAGAGGAGGTGGCCCGCGGCGTCCGT TCGTGAAGCCCGGGGAAGAGCAGGTGGCCCGCGGCGTCCGT Direct Gain 0 0.940476046583479 0 0.874141931533813 prediction 0.880952093166959 Functional Gain - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147128322 chr3:147128322 synonymous SNV . 0 21 hm5C_associated_SNPs_132183 0 0 0 0 0 exosome 0 0.500231643921222 0.748283863067626 0.000463287842443538 hm5C_site_52241 DeepMRMD:0.748283863067626;iRNA_m5C:0.000463287842443538 52242 chr1 10166527 10166527 1 + A G UCEC 10166527 - 10166507 10166547 41 AACTGCTGGCGGGCACTGCTTGGGGGCTACTGGCGAGGGCA AACTGCTGGCGGGCACTGCTCGGGGGCTACTGGCGAGGGCA Direct Gain 0 0.940472330871557 0 0.979867935180664 prediction 0.880944661743113 Functional Gain - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10166527 chr1:10166527 nonsynonymous SNV 0.056 0 21 hm5C_associated_SNPs_132184 0 0 0 0 0 Cytosol 0 0.500231643520472 0.959735870361328 0.000463287040943117 hm5C_site_52242 DeepMRMD:0.959735870361328;iRNA_m5C:0.000463287040943117 52243 chr11 88911242 88911242 1 + G C LUAD 88911242 + 88911222 88911262 41 AATGCTGTCCACCGTGGAGCGGGGACAGGAGTCCCTGTGGC AATGCTGTCCACCGTGGAGCCGGGACAGGAGTCCCTGTGGC Direct Gain 0 0.9404666648246 0 0.933083295822144 prediction 0.880933329649201 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:88911242 chr11:88911242 nonsynonymous SNV 0.159 5 21 hm5C_associated_SNPs_132185 0 0 0 0 0 unknown 0 0.500231644094852 0.866166591644288 0.000463288189703093 hm5C_site_52243 DeepMRMD:0.866166591644288;iRNA_m5C:0.000463288189703093 52244 chr12 109278897 109278897 1 + T G COAD 109278897 - 109278877 109278917 41 GGTGGTGGTGAGTGGGGTGAAGCGGTCCGCGTAGACCTTTA GGTGGTGGTGAGTGGGGTGACGCGGTCCGCGTAGACCTTTA Direct Gain 0 0.94044249113902 0 0.712732672691345 prediction 0.88088498227804 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109278897 chr12:109278897 nonsynonymous SNV 0.662 4 21 hm5C_associated_SNPs_132186 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.42546534538269 0.000463287842184634 hm5C_site_52244 DeepMRMD:0.42546534538269;iRNA_m5C:0.000463287842184634 52245 chr4 3495562 3495562 1 + A C rs377079102 3495562 + 3495542 3495582 41 GTGCCTTGCACTGGGGTGCCAAGGGCTGGAGGCCCTGCCGC GTGCCTTGCACTGGGGTGCCCAGGGCTGGAGGCCCTGCCGC Direct Gain 0 0.940433428385178 0 0.947583675384521 prediction 0.880866856770356 Functional Gain - DOK7 ENSG00000175920 UTR3 Human protein_coding chr4:3495562 chr4:3495562 . . 0 21 hm5C_associated_SNPs_132187 0 0 0 0 0 nucleus 0 0.50023164392092 0.895167350769042 0.000463287841839355 hm5C_site_52245 DeepMRMD:0.895167350769042;iRNA_m5C:0.000463287841839355 52246 chr3 186288212 186288212 1 + G C rs538078813 186288212 + 186288192 186288232 41 CCGAGGAAGTGGGCAAGCCGGAGGGATTTCGTGTACCTCAG CCGAGGAAGTGGGCAAGCCGCAGGGATTTCGTGTACCTCAG Direct Gain 0 0.940408341439782 0 0.894960463047028 prediction 0.880816682879564 Functional Gain - TBCCD1 ENSG00000090520;ENSG00000113838 UTR5 Human other chr3:186288212 chr3:186288212 . . 0 21 hm5C_associated_SNPs_132188 0 0 0 0 0 Nucleus 0 0.500231643921093 0.789920926094056 0.000463287842185078 hm5C_site_52246 DeepMRMD:0.789920926094056;iRNA_m5C:0.000463287842185078 52247 chr1 11589684 11589684 1 + T G LIHC 11589684 - 11589664 11589704 41 CATCGGGGCTGGAGCTAAGCAGGCAGCCAGGGGGTGCCATG CATCGGGGCTGGAGCTAAGCCGGCAGCCAGGGGGTGCCATG Direct Gain 0 0.94038796502845 0 0.488651871681213 prediction 0.880775930056899 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589684 chr1:11589684 nonsynonymous SNV 0.996 1 21 hm5C_associated_SNPs_132189 0 0 0 0 0 exosome 0 0.500231643920276 0 0.000463287840552384 hm5C_site_52247 DeepMRMD:0;iRNA_m5C:0.000463287840552384 52248 chr20 62896714 62896714 1 + G C LUSC 62896714 + 62896694 62896734 41 GTGGGGCTGGCGTGCAGAAAGAGCATGAAGAGTACATGAAG GTGGGGCTGGCGTGCAGAAACAGCATGAAGAGTACATGAAG Direct Gain 0 0.940369050579592 0 0.426568895578384 prediction 0.880738101159184 Functional Gain - PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62896714 chr20:62896714 nonsynonymous SNV 0.961 1 21 hm5C_associated_SNPs_132190 0 0 1 0 1 Ribosome 0 0.500231643921092 0 0.000463287842184856 hm5C_site_52248 DeepMRMD:0;iRNA_m5C:0.000463287842184856 52249 chr2 155555776 155555776 1 + C G LGG 155555776 - 155555756 155555796 41 GAGCCCAGGATGGACTGGAAGAGGAAGAGGATGATGCCCTC GAGCCCAGGATGGACTGGAACAGGAAGAGGATGATGCCCTC Direct Gain 0 0.940368958942923 0 0.696376383304596 prediction 0.880737917885845 Functional Gain - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155555776 chr2:155555776 synonymous SNV . 0 21 hm5C_associated_SNPs_132191 0 0 0 0 0 exosome 0 0.500231643924583 0.392752766609192 0.000463287849165495 hm5C_site_52249 DeepMRMD:0.392752766609192;iRNA_m5C:0.000463287849165495 52250 chr2 171573597 171573597 1 + A C HNSC 171573597 + 171573577 171573617 41 AGGCGGAGCCGGGGAAGAAGAAGCAGCACGTGTGCCACGTG AGGCGGAGCCGGGGAAGAAGCAGCAGCACGTGTGCCACGTG Direct Gain 0 0.940347636827165 0 0.900093197822571 prediction 0.88069527365433 Functional Gain - SP5 ENSG00000204335 CDS Human protein_coding chr2:171573597 chr2:171573597 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_132192 0 0 0 0 0 insoluble cytoplasm 0 0.500231643921094 0.800186395645142 0.000463287842187743 hm5C_site_52250 DeepMRMD:0.800186395645142;iRNA_m5C:0.000463287842187743 52251 chr22 38121968 38121968 1 + A G PRAD 38121968 - 38121948 38121988 41 GCCCTGGGGAGGTCCTGGAATAAGAGGGAAGGCTCTGGGGC GCCCTGGGGAGGTCCTGGAACAAGAGGGAAGGCTCTGGGGC Direct Gain 0 0.940326241070518 0 0.821645498275757 prediction 0.880652482141036 Functional Gain - TRIOBP ENSG00000100106 CDS Human protein_coding chr22:38121968 chr22:38121968 synonymous SNV . 0 21 hm5C_associated_SNPs_132193 0 0 0 0 0 Ribosome 0 0.500231643920406 0.643290996551514 0.00046328784081151 hm5C_site_52251 DeepMRMD:0.643290996551514;iRNA_m5C:0.00046328784081151 52252 chr19 33693826 33693826 1 + A G STAD 33693826 - 33693806 33693846 41 AGTTGGTGCCTGGCGGGTAGTTGAGGGGCCAGGCCGGGCTG AGTTGGTGCCTGGCGGGTAGCTGAGGGGCCAGGCCGGGCTG Direct Gain 0 0.940322665477458 0 0.72574520111084 prediction 0.880645330954916 Functional Gain - LRP3 ENSG00000130881 CDS Human protein_coding chr19:33693826 chr19:33693826 nonsynonymous SNV 1.000 2 21 hm5C_associated_SNPs_132194 0 0 0 0 0 Ribosome 0 0.500231643921092 0.45149040222168 0.000463287842184856 hm5C_site_52252 DeepMRMD:0.45149040222168;iRNA_m5C:0.000463287842184856 52253 chr17 76219627 76219627 1 + A G STAD 76219627 - 76219607 76219647 41 CGGCCAGAGGCCTCAATCCATGGCAGCCAGCTGCTCGATGG CGGCCAGAGGCCTCAATCCACGGCAGCCAGCTGCTCGATGG Direct Gain 0 0.940302565023199 0 0.250923693180084 prediction 0.880605130046398 Functional Gain - BIRC5 ENSG00000089685;ENSG00000268310 CDS Human other chr17:76219627 chr17:76219627 nonsynonymous SNV 0.008 0 21 hm5C_associated_SNPs_132195 0 0 0 0 0 Ribosome 0 0.500231643896605 0 0.000463287793210032 hm5C_site_52253 DeepMRMD:0;iRNA_m5C:0.000463287793210032 52254 chr11 5068193 5068193 1 + T C KIRC 5068193 + 5068173 5068213 41 TCCCAAGTGTTGGTGGGCATTAGCATGTGCATTGTAATTCG TCCCAAGTGTTGGTGGGCATCAGCATGTGCATTGTAATTCG Direct Gain 0 0.940291810140874 0 0.826094627380371 prediction 0.880583620281748 Functional Gain - OR52J3 ENSG00000205495 CDS Human protein_coding chr11:5068193 chr11:5068193 synonymous SNV . 0 21 hm5C_associated_SNPs_132196 0 0 0 0 0 unknown 0 0.500155339011513 0.652189254760742 0.000310678023026645 hm5C_site_52254 DeepMRMD:0.652189254760742;iRNA_m5C:0.000310678023026645 52255 chr19 4352936 4352936 1 + G C LUSC 4352936 + 4352916 4352956 41 AGGAGGAGTTGCTGATGGAAGAGGAGGAGGAGGACGTTCTG AGGAGGAGTTGCTGATGGAACAGGAGGAGGAGGACGTTCTG Direct Gain 0 0.940288645579303 0 0.885452270507812 prediction 0.880577291158605 Functional Gain - MPND ENSG00000008382 CDS Human protein_coding chr19:4352936 chr19:4352936 nonsynonymous SNV 0.976 0 21 hm5C_associated_SNPs_132197 0 0 0 0 2 Ribosome 0 0.500231643921092 0.770904541015624 0.000463287842184412 hm5C_site_52255 DeepMRMD:0.770904541015624;iRNA_m5C:0.000463287842184412 52256 chr12 98926791 98926791 1 + T C STAD 98926791 + 98926771 98926811 41 ACTTCTAAGGGAGACCTACCTAGGGAGCCTCTTGTTGCCAC ACTTCTAAGGGAGACCTACCCAGGGAGCCTCTTGTTGCCAC Direct Gain 0 0.94026956139892 0 0.963011801242828 prediction 0.88053912279784 Functional Gain - TMPO ENSG00000120802 CDS Human protein_coding chr12:98926791 chr12:98926791 synonymous SNV . 0 21 hm5C_associated_SNPs_132198 0 0 1 0 0 Ribosome 0 0.500231643918077 0.926023602485656 0.000463287836153903 hm5C_site_52256 DeepMRMD:0.926023602485656;iRNA_m5C:0.000463287836153903 52257 chr3 129694719 129694719 1 + C G rs5659 129694719 - 129694699 129694739 41 TCTGGCTGAGCACGGCCGCCGGGGACACCGGTCAGGTTCAG TCTGGCTGAGCACGGCCGCCCGGGACACCGGTCAGGTTCAG Direct Gain 0 0.940262561623301 0 0.931737720966339 prediction 0.880525123246602 Functional Gain - TRH ENSG00000170893 CDS Human protein_coding chr3:129694719 chr3:129694719 synonymous SNV . 0 21 hm5C_associated_SNPs_132199 0 0 0 0 0 Cytosol 0 0.500231643921194 0.863475441932678 0.000463287842387361 hm5C_site_52257 DeepMRMD:0.863475441932678;iRNA_m5C:0.000463287842387361 52258 chr17 7416220 7416220 1 + A G COAD 7416220 - 7416200 7416240 41 GGTGAAGGGATGTAGGGGCTTGAGGGACCTGGGGACCCCGG GGTGAAGGGATGTAGGGGCTCGAGGGACCTGGGGACCCCGG Direct Gain 0 0.940250672592561 0 0.858123481273651 prediction 0.880501345185123 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7416220 chr17:7416220 synonymous SNV . 0 21 hm5C_associated_SNPs_132200 0 0 0 0 0 Nucleus 0 0.500231643921092 0.716246962547302 0.000463287842184856 hm5C_site_52258 DeepMRMD:0.716246962547302;iRNA_m5C:0.000463287842184856 52259 chr17 22023463 22023463 1 + T C rs77383618 22023463 + 22023443 22023483 41 CCGTGAAGAGGCGGACATAATACAACAAGACGAGAAGACCC CCGTGAAGAGGCGGACATAACACAACAAGACGAGAAGACCC Direct Gain 0 0.940240928077965 0 0.552139401435852 prediction 0.88048185615593 Functional Gain - MTRNR2L1 ENSG00000256618 UTR3 Human protein_coding chr17:22023463 chr17:22023463 . . 0 21 hm5C_associated_SNPs_132201 0 0 1 0 0 Cytosol 0 0.500231643899976 0.104278802871704 0.000463287799951084 hm5C_site_52259 DeepMRMD:0.104278802871704;iRNA_m5C:0.000463287799951084 52260 chr5 112043283 112043283 1 + G C rs182500056 112043283 + 112043263 112043303 41 CGGAAGCCTAGCCGCTGCTCGGGGGGGACCTGCGGGCTCAG CGGAAGCCTAGCCGCTGCTCCGGGGGGACCTGCGGGCTCAG Direct Gain 0 0.940239685067827 0 0.950984060764313 prediction 0.880479370135653 Functional Gain - APC ENSG00000134982 UTR5 Human protein_coding chr5:112043283 chr5:112043283 . . 0 21 hm5C_associated_SNPs_132202 0 0 0 0 0 Cytosol 0 0.500231670125432 0.901968121528626 0.000463340250864697 hm5C_site_52260 DeepMRMD:0.901968121528626;iRNA_m5C:0.000463340250864697 52261 chr11 1267064 1267064 1 + C G LUSC 1267064 - 1267044 1267084 41 TCCAGGTCGTCCCTGGAGTGGAGGAGGGCGTGGCCGTAGAG TCCAGGTCGTCCCTGGAGTGCAGGAGGGCGTGGCCGTAGAG Direct Gain 0 0.940228362004945 0 0.695426225662231 prediction 0.880456724009889 Functional Gain - MUC5B ENSG00000117983 CDS Human protein_coding chr11:1267064 chr11:1267064 nonsynonymous SNV 0.002 1 21 hm5C_associated_SNPs_132203 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.390852451324462 0.000463287842184856 hm5C_site_52261 DeepMRMD:0.390852451324462;iRNA_m5C:0.000463287842184856 52262 chr19 50093194 50093194 1 + C G HNSC 50093194 - 50093174 50093214 41 CAGGGGCGTCGGTGGGCCCAGAGGGTTCAAAGGACTCAGAG CAGGGGCGTCGGTGGGCCCACAGGGTTCAAAGGACTCAGAG Direct Gain 0 0.940222062758781 0 0.766874611377716 prediction 0.880444125517562 Functional Gain - PRRG2 ENSG00000126460 CDS Human protein_coding chr19:50093194 chr19:50093194 nonsynonymous SNV 0.001 1 21 hm5C_associated_SNPs_132204 0 0 0 0 0 Ribosome 0 0.500231643921092 0.533749222755432 0.000463287842184856 hm5C_site_52262 DeepMRMD:0.533749222755432;iRNA_m5C:0.000463287842184856 52263 chr1 152648708 152648708 1 + C G ESCA 152648708 - 152648688 152648728 41 ACGGGGCCTGTGGTGGCTCAGGGAGCAGCCACCAGCCCCAG ACGGGGCCTGTGGTGGCTCACGGAGCAGCCACCAGCCCCAG Direct Gain 0 0.940212864733392 0 0.95095419883728 prediction 0.880425729466785 Functional Gain - LCE2C ENSG00000187180 CDS Human protein_coding chr1:152648708 chr1:152648708 nonsynonymous SNV 0.974 0 21 hm5C_associated_SNPs_132205 0 0 0 0 0 exosome 0 0.500231643921092 0.90190839767456 0.000463287842184856 hm5C_site_52263 DeepMRMD:0.90190839767456;iRNA_m5C:0.000463287842184856 52264 chr6 50791273 50791273 1 + T G LGG 50791273 - 50791253 50791293 41 GGGGTCCTGGCTCTGGTGGTAGGGGAGCGGCTGGTAGGGGG GGGGTCCTGGCTCTGGTGGTCGGGGAGCGGCTGGTAGGGGG Direct Gain 0 0.940185637759778 0 0.900189936161041 prediction 0.880371275519555 Functional Gain - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50791273 chr6:50791273 nonsynonymous SNV 1.000 3 21 hm5C_associated_SNPs_132206 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.800379872322082 0.000463287842184856 hm5C_site_52264 DeepMRMD:0.800379872322082;iRNA_m5C:0.000463287842184856 52265 chr19 7085442 7085442 1 + T C rs72986677 7085442 + 7085422 7085462 41 GCCTCAGCCTCCCAAAATGCTGGGAATACAGGAACGAGCTA GCCTCAGCCTCCCAAAATGCCGGGAATACAGGAACGAGCTA Direct Gain 0 0.940182586412487 0 0.520814418792725 prediction 0.880365172824974 Functional Gain - ZNF557 ENSG00000130544 UTR3 Human protein_coding chr19:7085442 chr19:7085442 . . 0 21 hm5C_associated_SNPs_132207 0 0 0 0 0 Cytosol 0 0.50023164397372 0.0416288375854501 0.000463287947439772 hm5C_site_52265 DeepMRMD:0.0416288375854501;iRNA_m5C:0.000463287947439772 52266 chr19 36212211 36212211 1 + A G rs539376983 36212211 - 36212191 36212231 41 ATCTTCAGGTGGGCTTCGCTTGGGGTAAACTGAGGGGCCCG ATCTTCAGGTGGGCTTCGCTCGGGGTAAACTGAGGGGCCCG Direct Gain 0 0.940162696024477 0 0.973565578460693 prediction 0.880325392048954 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36212211 chr19:36212211 synonymous SNV . 0 21 hm5C_associated_SNPs_132208 0 0 0 0 0 chromatin 0 0.500231643921092 0.947131156921386 0.000463287842184856 hm5C_site_52266 DeepMRMD:0.947131156921386;iRNA_m5C:0.000463287842184856 52267 chr1 20517880 20517880 1 + G C LUSC 20517880 + 20517860 20517900 41 TGGGCATCTCACTGGAAGATGGGGAAGGGTGGCCCTGAGTC TGGGCATCTCACTGGAAGATCGGGAAGGGTGGCCCTGAGTC Direct Gain 0 0.940121834533253 0 0.862965226173401 prediction 0.880243669066506 Functional Gain - UBXN10 ENSG00000162543 CDS Human protein_coding chr1:20517880 chr1:20517880 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_132209 0 0 1 0 0 Cytosol 0 0.500231643921092 0.725930452346802 0.000463287842184856 hm5C_site_52267 DeepMRMD:0.725930452346802;iRNA_m5C:0.000463287842184856 52268 chr2 73612949 73612949 1 + C G rs543687863 73612949 - 73612929 73612969 41 GAGGAGGAGGAGGGGGGGAGGGAGGGGAAGGGGAGAGCCCT GAGGAGGAGGAGGGGGGGAGCGAGGGGAAGGGGAGAGCCCT Direct Gain 0 0.940121823916591 0 0.959416151046753 prediction 0.880243647833183 Functional Gain - ALMS1 ENSG00000116127 UTR5 Human protein_coding chr2:73612949 chr2:73612949 . . 0 21 hm5C_associated_SNPs_132210 0 0 0 0 0 Nucleus 0 0.500231643921092 0.918832302093506 0.000463287842184856 hm5C_site_52268 DeepMRMD:0.918832302093506;iRNA_m5C:0.000463287842184856 52269 chr1 231298970 231298970 1 + T C rs372035563 231298970 + 231298950 231298990 41 GGTGCAGGCGGGAGTGCAGCTGGCGGCCTCGGCGGCGGTGC GGTGCAGGCGGGAGTGCAGCCGGCGGCCTCGGCGGCGGTGC Direct Gain 0 0.940116578345888 0 0.89950168132782 prediction 0.880233156691777 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231298970 chr1:231298970 synonymous SNV . 0 21 hm5C_associated_SNPs_132211 0 0 0 0 0 exosome 0 0.500231647215866 0.79900336265564 0.000463294431732209 hm5C_site_52269 DeepMRMD:0.79900336265564;iRNA_m5C:0.000463294431732209 52270 chr11 75115883 75115883 1 + A G PAAD 75115883 - 75115863 75115903 41 TGTGGGGACTGGCTGGGGCATGGCAGGCGGCTCTGGCTTCC TGTGGGGACTGGCTGGGGCACGGCAGGCGGCTCTGGCTTCC Direct Gain 0 0.94011605396367 0 0.806417047977448 prediction 0.88023210792734 Functional Gain - RPS3 ENSG00000149273 CDS Human protein_coding chr11:75115883 chr11:75115883 nonsynonymous SNV 0.998 1 21 hm5C_associated_SNPs_132212 0 0 0 0 0 Cytosol 0 0.500231643921101 0.612834095954896 0.000463287842202176 hm5C_site_52270 DeepMRMD:0.612834095954896;iRNA_m5C:0.000463287842202176 52271 chr8 124820546 124820546 1 + T C STAD 124820546 + 124820526 124820566 41 GCTTCTGGCTCAGATGTAAATGGGAGTACAGAGTCATTTGA GCTTCTGGCTCAGATGTAAACGGGAGTACAGAGTCATTTGA Direct Gain 0 0.940114879996705 0 0.89301061630249 prediction 0.880229759993409 Functional Gain - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124820546 chr8:124820546 synonymous SNV . 0 21 hm5C_associated_SNPs_132213 0 0 1 0 2 Ribosome 0 0.500231643921113 0.78602123260498 0.000463287842226823 hm5C_site_52271 DeepMRMD:0.78602123260498;iRNA_m5C:0.000463287842226823 52272 chr2 56411817 56411817 1 + C G rs35587531 56411817 - 56411797 56411837 41 GGACGAGCCGGCCGGGGCTGGGGAACAACTTTCCGCCGCCG GGACGAGCCGGCCGGGGCTGCGGAACAACTTTCCGCCGCCG Direct Gain 0 0.940100756096241 0 0.923818051815033 prediction 0.880201512192482 Functional Gain - CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56411817 chr2:56411817 nonsynonymous SNV 0.354 0 21 hm5C_associated_SNPs_132214 0 0 0 0 1 exosome 0 0.500231644553357 0.847636103630066 0.000463289106714004 hm5C_site_52272 DeepMRMD:0.847636103630066;iRNA_m5C:0.000463289106714004 52273 chr6 22570085 22570085 1 + C G rs202131804 22570085 - 22570065 22570105 41 TGCCCTTCTCTGAGGCTAATGGGCAGTCGGAGGCCTGGACC TGCCCTTCTCTGAGGCTAATCGGCAGTCGGAGGCCTGGACC Direct Gain 0 0.940090869804228 0 0.919691801071167 prediction 0.880181739608456 Functional Gain - HDGFL1 ENSG00000112273 CDS Human protein_coding chr6:22570085 chr6:22570085 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_132215 0 0 0 0 0 unknown 0 0.500231643921074 0.839383602142334 0.000463287842148219 hm5C_site_52273 DeepMRMD:0.839383602142334;iRNA_m5C:0.000463287842148219 52274 chr5 32098541 32098541 1 + A G COAD 32098541 - 32098521 32098561 41 GCCAGTGAGGCGCCGTTGACTGACAGAAGGAAATCCCCTCG GCCAGTGAGGCGCCGTTGACCGACAGAAGGAAATCCCCTCG Direct Gain 0 0.940090225362725 0 0.580901265144348 prediction 0.88018045072545 Functional Gain - PDZD2 ENSG00000133401 CDS Human protein_coding chr5:32098541 chr5:32098541 synonymous SNV . 0 21 hm5C_associated_SNPs_132216 0 0 1 0 0 chromatin 0 0.500231767619692 0.161802530288696 0.000463535239384028 hm5C_site_52274 DeepMRMD:0.161802530288696;iRNA_m5C:0.000463535239384028 52275 chr2 74043410 74043410 1 + T C UCEC 74043410 + 74043390 74043430 41 GGGTAAAGGCCCGGAGAAAATTCAAGTCAAGGCCCAGAAAC GGGTAAAGGCCCGGAGAAAACTCAAGTCAAGGCCCAGAAAC Direct Gain 0 0.940072106963832 0 0.76722526550293 prediction 0.880144213927665 Functional Gain - C2orf78 ENSG00000187833 CDS Human protein_coding chr2:74043410 chr2:74043410 nonsynonymous SNV 0.043 0 21 hm5C_associated_SNPs_132217 0 0 0 0 0 unknown 0 0.500231643921092 0.53445053100586 0.000463287842184856 hm5C_site_52275 DeepMRMD:0.53445053100586;iRNA_m5C:0.000463287842184856 52276 chr11 838373 838373 1 + G C rs539779639 838373 + 838353 838393 41 TGCCCAGCAGGGGAGGTGAGGGGGGCTGGCGGGGCGAAGTT TGCCCAGCAGGGGAGGTGAGCGGGGCTGGCGGGGCGAAGTT Direct Gain 0 0.940067467291039 0 0.907980442047119 prediction 0.880134934582078 Functional Gain - CD151 ENSG00000177697 UTR3 Human protein_coding chr11:838373 chr11:838373 . . 0 21 hm5C_associated_SNPs_132218 0 0 1 0 0 Ribosome 0 0.500231643921097 0.815960884094238 0.000463287842193294 hm5C_site_52276 DeepMRMD:0.815960884094238;iRNA_m5C:0.000463287842193294 52277 chr16 86589439 86589439 1 + G C rs560141426 86589439 + 86589419 86589459 41 TAAGGGTCGAGAAGCGGCTCGAGGAGACCAGGCTGCACAGA TAAGGGTCGAGAAGCGGCTCCAGGAGACCAGGCTGCACAGA Direct Gain 0 0.94005709718497 0 0.870535850524902 prediction 0.88011419436994 Functional Gain - FLJ30679 ENSG00000103248 upstream Human protein_coding chr16:86589439 chr16:86589439 . . 0 21 hm5C_associated_SNPs_132219 0 0 0 0 0 unknown 0 0.50023164393736 0.741071701049804 0.000463287874719942 hm5C_site_52277 DeepMRMD:0.741071701049804;iRNA_m5C:0.000463287874719942 52278 chr15 40757594 40757594 1 + G C BLCA 40757594 + 40757574 40757614 41 AGAACAGTGTGGCCTGCATTGAGGAGAAGTGCTATGTGCTG AGAACAGTGTGGCCTGCATTCAGGAGAAGTGCTATGTGCTG Direct Gain 0 0.940044237419246 0 0.937997817993164 prediction 0.880088474838493 Functional Gain - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40757594 chr15:40757594 nonsynonymous SNV 0.997 5 21 hm5C_associated_SNPs_132220 0 0 1 0 3 chromatin 0 0.500227749797288 0.875995635986328 0.000455499594575359 hm5C_site_52278 DeepMRMD:0.875995635986328;iRNA_m5C:0.000455499594575359 52279 chr6 167585684 167585684 1 + G C CESC 167585684 + 167585664 167585704 41 CCAAGGAGGGCACCCACCCAGAGGACCCGTGCCCGGGAGCT CCAAGGAGGGCACCCACCCACAGGACCCGTGCCCGGGAGCT Direct Gain 0 0.940016267659323 0 0.938189387321472 prediction 0.880032535318646 Functional Gain - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167585684 chr6:167585684 nonsynonymous SNV 0.001 3 21 hm5C_associated_SNPs_132221 0 0 0 0 2 exosome 0 0.500231643921092 0.876378774642944 0.000463287842184856 hm5C_site_52279 DeepMRMD:0.876378774642944;iRNA_m5C:0.000463287842184856 52280 chr10 4877971 4877971 1 + C G LUAD 4877971 - 4877951 4877991 41 TCCAGGAAGTCCGTGTCACTGGGAATAACCATGTTGCTCTC TCCAGGAAGTCCGTGTCACTCGGAATAACCATGTTGCTCTC Direct Gain 0 0.939979899697803 0 0.970823347568512 prediction 0.879959799395606 Functional Gain - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4877971 chr10:4877971 synonymous SNV . 0 21 hm5C_associated_SNPs_132222 0 0 0 0 0 chromatin 0 0.500231643921092 0.941646695137024 0.000463287842184856 hm5C_site_52280 DeepMRMD:0.941646695137024;iRNA_m5C:0.000463287842184856 52281 chr2 27660166 27660166 1 + C G LUAD 27660166 - 27660146 27660186 41 TGGCTTCCTGTGGCACATATGAGGACTCTCCATTGCCCTGA TGGCTTCCTGTGGCACATATCAGGACTCTCCATTGCCCTGA Direct Gain 0 0.939978303843934 0 0.834202170372009 prediction 0.879956607687867 Functional Gain - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27660166 chr2:27660166 stopgain 1.000 1 21 hm5C_associated_SNPs_132223 0 0 0 0 0 Cytosol 0 0.500231645657611 0.668404340744018 0.000463291315222714 hm5C_site_52281 DeepMRMD:0.668404340744018;iRNA_m5C:0.000463291315222714 52282 chr4 44680652 44680652 1 + G C READ 44680652 + 44680632 44680672 41 CCCGGGTCATGTGGACCCTCGTGGGTCGGGGCTGGGGGTGC CCCGGGTCATGTGGACCCTCCTGGGTCGGGGCTGGGGGTGC Direct Gain 0 0.939977006352516 0 0.755647659301758 prediction 0.879954012705032 Functional Gain - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44680652 chr4:44680652 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_132224 0 0 1 0 0 Ribosome 0 0.500231643006217 0.511295318603516 0.000463286012433839 hm5C_site_52282 DeepMRMD:0.511295318603516;iRNA_m5C:0.000463286012433839 52283 chr11 93796824 93796824 1 + A G SKCM 93796824 - 93796804 93796844 41 TGTCCTTTGGGGCGTCGATGTGCGAATGGTACACCCAGGTC TGTCCTTTGGGGCGTCGATGCGCGAATGGTACACCCAGGTC Direct Gain 0 0.93995375138622 0 0.83219701051712 prediction 0.879907502772441 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93796824 chr11:93796824 nonsynonymous SNV 0.983 5 21 hm5C_associated_SNPs_132225 0 0 0 0 0 exosome 0 0.500231643916082 0.66439402103424 0.000463287832163095 hm5C_site_52283 DeepMRMD:0.66439402103424;iRNA_m5C:0.000463287832163095 52284 chr19 2987056 2987056 1 + G C BRCA 2987056 + 2987036 2987076 41 CCCTGCAGGAGTCGAGCTTTGAGGACATCATGGCCACCAGG CCCTGCAGGAGTCGAGCTTTCAGGACATCATGGCCACCAGG Direct Gain 0 0.939941326476997 0 0.914857506752014 prediction 0.879882652953995 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2987056 chr19:2987056 nonsynonymous SNV 0.000 0 21 hm5C_associated_SNPs_132226 0 0 0 0 1 exosome 0 0.500231667929585 0.829715013504028 0.000463335859170355 hm5C_site_52284 DeepMRMD:0.829715013504028;iRNA_m5C:0.000463335859170355 52285 chr1 1468633 1468633 1 + C G rs6690064 1468633 - 1468613 1468653 41 CAGGGTCAGGGTCAGGGTGTGGGGACCCCCACTGGGCACCG CAGGGTCAGGGTCAGGGTGTCGGGACCCCCACTGGGCACCG Direct Gain 0 0.939938912911993 0 0.898139476776123 prediction 0.879877825823985 Functional Gain - ATAD3A ENSG00000197785 intronic Human protein_coding chr1:1468633 chr1:1468633 . . 0 21 hm5C_associated_SNPs_132227 0 0 0 0 0 Ribosome 0 0.500231643921088 0.796278953552246 0.000463287842175752 hm5C_site_52285 DeepMRMD:0.796278953552246;iRNA_m5C:0.000463287842175752 52286 chr17 3563992 3563992 1 + A G rs112689752 3563992 - 3563972 3564012 41 CTTGCAGAAACGCTGGTAGTTTGGGGCAAGGCCTTCGGCTG CTTGCAGAAACGCTGGTAGTCTGGGGCAAGGCCTTCGGCTG Direct Gain 0 0.93993884527679 0 0.951992332935333 prediction 0.879877690553579 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3563992 chr17:3563992 synonymous SNV . 0 21 hm5C_associated_SNPs_132228 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921056 0.903984665870666 0.000463287842111582 hm5C_site_52286 DeepMRMD:0.903984665870666;iRNA_m5C:0.000463287842111582 52287 chr8 42396754 42396754 1 + C G rs555855005 42396754 - 42396734 42396774 41 GCGCGCGGGAAACGGTTACCGAGCGGACCTGGACGCCCTCT GCGCGCGGGAAACGGTTACCCAGCGGACCTGGACGCCCTCT Direct Gain 0 0.939924672856411 0 0.969314754009247 prediction 0.879849345712822 Functional Gain - SMIM19 ENSG00000176209 UTR5 Human protein_coding chr8:42396754 chr8:42396754 . . 0 21 hm5C_associated_SNPs_132229 0 0 1 0 0 Ribosome 0 0.500231643921138 0.938629508018494 0.000463287842275228 hm5C_site_52287 DeepMRMD:0.938629508018494;iRNA_m5C:0.000463287842275228 52288 chr9 128509657 128509657 1 + C G rs193112371 128509657 - 128509637 128509677 41 CGGCGGCGGCGGCGACGAGGGAGGAGAAGAAAGAGGGGGAG CGGCGGCGGCGGCGACGAGGCAGGAGAAGAAAGAGGGGGAG Direct Gain 0 0.939888454260363 0 0.847979545593262 prediction 0.879776908520726 Functional Gain - PBX3 ENSG00000167081 UTR5 Human protein_coding chr9:128509657 chr9:128509657 . . 0 21 hm5C_associated_SNPs_132230 0 0 0 0 0 Nucleus 0 0.500231643921091 0.695959091186524 0.000463287842182858 hm5C_site_52288 DeepMRMD:0.695959091186524;iRNA_m5C:0.000463287842182858 52289 chr11 57135903 57135903 1 + T C UCEC 57135903 + 57135883 57135923 41 TGTGGCGGCCTTTACTTCTGTGGGAGTGGTGAGTTCAGCCC TGTGGCGGCCTTTACTTCTGCGGGAGTGGTGAGTTCAGCCC Direct Gain 0 0.939878030191614 0 0.866982519626617 prediction 0.879756060383227 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57135903 chr11:57135903 nonsynonymous SNV 0.991 3 21 hm5C_associated_SNPs_132231 0 0 0 0 2 exosome 0 0.500231643921093 0.733965039253234 0.000463287842185078 hm5C_site_52289 DeepMRMD:0.733965039253234;iRNA_m5C:0.000463287842185078 52290 chr2 56420514 56420514 1 + C G LUSC 56420514 - 56420494 56420534 41 TCCTCCTGTGCCTGCCGTCTGAGGGTGCCCTCCCTGCTGCC TCCTCCTGTGCCTGCCGTCTCAGGGTGCCCTCCCTGCTGCC Direct Gain 0 0.939864953391213 0 0.955471038818359 prediction 0.879729906782425 Functional Gain - CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56420514 chr2:56420514 synonymous SNV . 0 21 hm5C_associated_SNPs_132232 0 0 0 0 0 exosome 0 0.500231643921092 0.910942077636718 0.000463287842184856 hm5C_site_52290 DeepMRMD:0.910942077636718;iRNA_m5C:0.000463287842184856 52291 chr16 30910757 30910757 1 + C G BLCA 30910757 - 30910737 30910777 41 AGTGGGGAAGAAGTGAGACTGAGGAATCAGTCTGGGGGTCT AGTGGGGAAGAAGTGAGACTCAGGAATCAGTCTGGGGGTCT Direct Gain 0 0.939841286903891 0 0.915192365646362 prediction 0.879682573807782 Functional Gain - CTF1 ENSG00000150281 CDS Human protein_coding chr16:30910757 chr16:30910757 stopgain 0.976 1 21 hm5C_associated_SNPs_132233 0 0 0 0 0 Cytosol 0 0.500231643921091 0.830384731292724 0.000463287842182414 hm5C_site_52291 DeepMRMD:0.830384731292724;iRNA_m5C:0.000463287842182414 52292 chr3 16343302 16343302 1 + A C UCEC 16343302 + 16343282 16343322 41 CCTCAGAGAGCAGGCAAACAAAAGAAATGGATATGAGATAG CCTCAGAGAGCAGGCAAACACAAGAAATGGATATGAGATAG Direct Gain 0 0.939840886531924 0 0.519748985767365 prediction 0.879681773063848 Functional Gain - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16343302 chr3:16343302 nonsynonymous SNV 0.001 0 21 hm5C_associated_SNPs_132234 0 0 1 2 0 Ribosome 0 0.500231643924574 0.0394979715347299 0.000463287849147509 hm5C_site_52292 DeepMRMD:0.0394979715347299;iRNA_m5C:0.000463287849147509 52293 chr5 163362 163362 1 + T G UCEC 163362 - 163342 163382 41 CTGGGTGGGCTCAGAGGAACAGGCAGAGCTGTCCTCCAGGT CTGGGTGGGCTCAGAGGAACCGGCAGAGCTGTCCTCCAGGT Direct Gain 0 0.939824988264359 0 0.775401830673218 prediction 0.879649976528719 Functional Gain - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:163362 chr5:163362 nonsynonymous SNV 0.005 2 21 hm5C_associated_SNPs_132235 0 0 0 0 0 exosome 0 0.500231643921092 0.550803661346436 0.000463287842184412 hm5C_site_52293 DeepMRMD:0.550803661346436;iRNA_m5C:0.000463287842184412 52294 chr2 71160076 71160076 1 + T G rs200923058 71160076 - 71160056 71160096 41 GCAGGTAGGCCTGGCAGGCTAGGGGTCAGCGCCAGGAGGCT GCAGGTAGGCCTGGCAGGCTCGGGGTCAGCGCCAGGAGGCT Direct Gain 0 0.939803646599772 0 0.892323017120361 prediction 0.879607293199544 Functional Gain - VAX2 ENSG00000116035 CDS Human protein_coding chr2:71160076 chr2:71160076 synonymous SNV . 0 21 hm5C_associated_SNPs_132236 0 0 0 0 0 exosome 0 0.50023164392207 0.784646034240722 0.000463287844139959 hm5C_site_52294 DeepMRMD:0.784646034240722;iRNA_m5C:0.000463287844139959 52295 chr3 149689146 149689146 1 + T C rs563299541 149689146 + 149689126 149689166 41 GGCGGGCCGAGCTTCGGACCTCGGGCCGGCGGAGAGGGTGG GGCGGGCCGAGCTTCGGACCCCGGGCCGGCGGAGAGGGTGG Direct Gain 0 0.9397795695934 0 0.3872409760952 prediction 0.8795591391868 Functional Gain - LOC646903 ENSG00000268175 CDS Human other chr3:149689146 chr3:149689146 nonsynonymous SNV . 0 21 hm5C_associated_SNPs_132237 0 0 0 0 0 unknown 0 0.500231644770663 0 0.000463289541326573 hm5C_site_52295 DeepMRMD:0;iRNA_m5C:0.000463289541326573 52296 chr17 57184046 57184046 1 + T C rs11541295 57184046 + 57184026 57184066 41 CCCGCCCCGAGGCGCAGAAGTAGGGCGAACGGTGGCCGCAG CCCGCCCCGAGGCGCAGAAGCAGGGCGAACGGTGGCCGCAG Direct Gain 0 0.939747477401068 0 0.968027234077454 prediction 0.879494954802136 Functional Gain - TRIM37 ENSG00000224738 ncRNA_exonic Human antisense chr17:57184046 chr17:57184046 . . 0 21 hm5C_associated_SNPs_132238 1 0 0 0 0 Ribosome 0 0.500231643921092 0.936054468154908 0.000463287842184856 hm5C_site_52296 DeepMRMD:0.936054468154908;iRNA_m5C:0.000463287842184856 Mulibrey nanism syndrome Mulibrey nanism syndrome 52297 chr19 18778706 18778706 1 + A G GBM 18778706 - 18778686 18778726 41 GGTGGCCATCTGGCCGATGTTGAGGCAGGTCTCCACGCTCA GGTGGCCATCTGGCCGATGTCGAGGCAGGTCTCCACGCTCA Direct Gain 0 0.939745936943973 0 0.899255990982056 prediction 0.879491873887945 Functional Gain - KLHL26 ENSG00000167487 CDS Human protein_coding chr19:18778706 chr19:18778706 nonsynonymous SNV 0.983 0 21 hm5C_associated_SNPs_132239 0 0 0 0 0 chromatin 0 0.500231643916681 0.798511981964112 0.000463287833361914 hm5C_site_52297 DeepMRMD:0.798511981964112;iRNA_m5C:0.000463287833361914 52298 chr20 33296590 33296590 1 + C G COAD 33296590 - 33296570 33296610 41 GGGGGCAGTCGGGGTCTTCGGGGGGCGAGGGGGTGCTGAAG GGGGGCAGTCGGGGTCTTCGCGGGGCGAGGGGGTGCTGAAG Direct Gain 0 0.939739290739378 0 0.974429607391357 prediction 0.879478581478756 Functional Gain - TP53INP2 ENSG00000078804 CDS Human protein_coding chr20:33296590 chr20:33296590 nonsynonymous SNV 0.060 1 21 hm5C_associated_SNPs_132240 0 0 0 0 0 nucleolus 0 0.500231643921092 0.948859214782714 0.000463287842184856 hm5C_site_52298 DeepMRMD:0.948859214782714;iRNA_m5C:0.000463287842184856 52299 chr6 21595265 21595265 1 + G C UCEC 21595265 + 21595245 21595285 41 CAGTGGCGGGGGCGGCCATGGGGGCGGCGGCGGCGGCGGGA CAGTGGCGGGGGCGGCCATGCGGGCGGCGGCGGCGGCGGGA Direct Gain 0 0.939711529577017 0 0.904994606971741 prediction 0.879423059154035 Functional Gain - SOX4 ENSG00000124766 CDS Human protein_coding chr6:21595265 chr6:21595265 nonsynonymous SNV 0.453 0 21 hm5C_associated_SNPs_132241 0 0 1 0 0 Nucleus 0 0.500231643972985 0.809989213943482 0.000463287945969837 hm5C_site_52299 DeepMRMD:0.809989213943482;iRNA_m5C:0.000463287945969837 52300 chr1 3542012 3542012 1 + G C LUAD 3542012 + 3541992 3542032 41 GCAGCATCGAGCAGGCAGTGGAGGAGATCCGCGTGGTGGTG GCAGCATCGAGCAGGCAGTGCAGGAGATCCGCGTGGTGGTG Direct Gain 0 0.939709904119136 0 0.845305442810059 prediction 0.879419808238271 Functional Gain - TPRG1L ENSG00000158109 CDS Human protein_coding chr1:3542012 chr1:3542012 nonsynonymous SNV 0.996 0 21 hm5C_associated_SNPs_132242 0 0 0 0 2 Ribosome 0 0.500234062273235 0.690610885620118 0.000468124546470161 hm5C_site_52300 DeepMRMD:0.690610885620118;iRNA_m5C:0.000468124546470161 52301 chr16 68057070 68057070 1 + G C CESC 68057070 + 68057050 68057090 41 GCCAGGAGCAACCGAGTCACGAGGGAAAAGAGCCGCACCGG GCCAGGAGCAACCGAGTCACCAGGGAAAAGAGCCGCACCGG Direct Gain 0 0.939697785398951 0 0.914100885391235 prediction 0.879395570797902 Functional Gain - DDX28 ENSG00000182810 CDS Human protein_coding chr16:68057070 chr16:68057070 synonymous SNV . 0 21 hm5C_associated_SNPs_132243 0 0 0 0 0 Ribosome 0 0.500231644246458 0.82820177078247 0.000463288492916547 hm5C_site_52301 DeepMRMD:0.82820177078247;iRNA_m5C:0.000463288492916547 52302 chr6 46644524 46644524 1 + G C rs151298041 46644524 + 46644504 46644544 41 TATGCTGAAGAGCCTGCTTAGAGGAGGAGTACCAGGAGGGA TATGCTGAAGAGCCTGCTTACAGGAGGAGTACCAGGAGGGA Direct Gain 0 0.939686547313377 0 0.836264848709106 prediction 0.879373094626755 Functional Gain - LOC101926934 ENSG00000242973 ncRNA_intronic Human antisense chr6:46644524 chr6:46644524 . . 0 21 hm5C_associated_SNPs_132244 0 0 1 0 0 unknown 0 0.500231643921092 0.672529697418212 0.000463287842184856 hm5C_site_52302 DeepMRMD:0.672529697418212;iRNA_m5C:0.000463287842184856 52303 chr11 22363180 22363180 1 + T C STAD 22363180 + 22363160 22363200 41 CGCTGTGCGACTGCACGTGCTTCGGCCTGCCCCGCCGCTAC CGCTGTGCGACTGCACGTGCCTCGGCCTGCCCCGCCGCTAC Direct Gain 0 0.939677781607015 0 0.18384376168251 prediction 0.87935556321403 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363180 chr11:22363180 nonsynonymous SNV 1.000 1 21 hm5C_associated_SNPs_132245 0 0 0 0 0 unknown 0 0.50023164448099 0 0.00046328896197978 hm5C_site_52303 DeepMRMD:0;iRNA_m5C:0.00046328896197978 52304 chr5 140774126 140774126 1 + A G OV 140774126 - 140774106 140774146 41 GTCACCAGGTAGCCACGCTCTGCGGAGCGGGGCGCCAGCTC GTCACCAGGTAGCCACGCTCCGCGGAGCGGGGCGCCAGCTC Direct Gain 0 0.939665801877529 0 0.830400228500366 prediction 0.879331603755059 Functional Gain - PCDHGA8 ENSG00000253767 CDS Human protein_coding chr5:140774126 chr5:140774126 synonymous SNV . 0 21 hm5C_associated_SNPs_132246 0 0 0 0 0 exosome 0 0.50023164392109 0.660800457000732 0.000463287842179083 hm5C_site_52304 DeepMRMD:0.660800457000732;iRNA_m5C:0.000463287842179083 52305 chr1 152648706 152648706 1 + C G rs41305072 152648706 - 152648686 152648726 41 GGGGCCTGTGGTGGCTCAGGGAGCAGCCACCAGCCCCAGAG GGGGCCTGTGGTGGCTCAGGCAGCAGCCACCAGCCCCAGAG Direct Gain 0 0.939663124144882 0 0.820137500762939 prediction 0.879326248289763 Functional Gain - LCE2C ENSG00000187180 CDS Human protein_coding chr1:152648706 chr1:152648706 nonsynonymous SNV 0.966 0 21 hm5C_associated_SNPs_132247 0 0 0 0 0 exosome 0 0.500231643921092 0.640275001525878 0.000463287842184856 hm5C_site_52305 DeepMRMD:0.640275001525878;iRNA_m5C:0.000463287842184856 52306 chr10 11912431 11912431 1 + C G rs12253600 11912431 - 11912411 11912451 41 TCTTCAGGGTGGGGAGAAACGGGGTGGACTGGAGCCCGCGC TCTTCAGGGTGGGGAGAAACCGGGTGGACTGGAGCCCGCGC Direct Gain 0 0.93964159894933 0 0.938335478305817 prediction 0.87928319789866 Functional Gain - PROSER2-AS1 ENSG00000225778 ncRNA_intronic Human antisense chr10:11912431 chr10:11912431 . . 0 21 hm5C_associated_SNPs_132248 0 0 0 0 0 unknown 0 0.500231643921092 0.876670956611634 0.000463287842184856 hm5C_site_52306 DeepMRMD:0.876670956611634;iRNA_m5C:0.000463287842184856 52307 chr11 4471142 4471142 1 + T C rs142527954 4471142 + 4471122 4471162 41 GCTGTGGTGAGGCTGGCGTGTGGGGACACTAGCTTCAACAA GCTGTGGTGAGGCTGGCGTGCGGGGACACTAGCTTCAACAA Direct Gain 0 0.93963100974382 0 0.943502008914948 prediction 0.87926201948764 Functional Gain - OR52K2 ENSG00000181963 CDS Human protein_coding chr11:4471142 chr11:4471142 synonymous SNV . 0 21 hm5C_associated_SNPs_132249 0 0 0 0 0 exosome 0 0.500231643921099 0.887004017829896 0.000463287842198401 hm5C_site_52307 DeepMRMD:0.887004017829896;iRNA_m5C:0.000463287842198401 52308 chr22 32756261 32756261 1 + C G UCEC 32756261 - 32756241 32756281 41 AGGAGGAAGTTGTTGGCTGTGTCGGCATCCAAGGTCATATC AGGAGGAAGTTGTTGGCTGTCTCGGCATCCAAGGTCATATC Direct Gain 0 0.939625814722968 0 0.314908683300018 prediction 0.879251629445936 Functional Gain - RFPL3 ENSG00000128276 CDS Human protein_coding chr22:32756261 chr22:32756261 nonsynonymous SNV 0.071 1 21 hm5C_associated_SNPs_132250 0 0 0 0 0 exosome 0 0.500231643925847 0 0.000463287851693694 hm5C_site_52308 DeepMRMD:0;iRNA_m5C:0.000463287851693694 52309 chr5 32712495 32712495 1 + A C HNSC 32712495 + 32712475 32712515 41 GCCGCGCTGCACTGGTCTACAGCGACGACAAGCTGGAGCGG GCCGCGCTGCACTGGTCTACCGCGACGACAAGCTGGAGCGG Direct Gain 0 0.939617212272288 0 0.75789737701416 prediction 0.879234424544576 Functional Gain - NPR3 ENSG00000113389 CDS Human protein_coding chr5:32712495 chr5:32712495 nonsynonymous SNV 0.996 3 21 hm5C_associated_SNPs_132251 0 0 0 0 0 nucleoplasm 0 0.500231626714913 0.51579475402832 0.00046325342982545 hm5C_site_52309 DeepMRMD:0.51579475402832;iRNA_m5C:0.00046325342982545 52310 chr17 45608696 45608696 1 + C G CESC 45608696 - 45608676 45608716 41 AGGAAGAGCAGGCGGCGAGCGAGGGAGGGGGCGGCAGCTGC AGGAAGAGCAGGCGGCGAGCCAGGGAGGGGGCGGCAGCTGC Direct Gain 0 0.939606696802303 0 0.886904954910278 prediction 0.879213393604606 Functional Gain - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45608696 chr17:45608696 synonymous SNV . 0 21 hm5C_associated_SNPs_132252 0 0 0 0 0 Nucleus 0 0.500231643746303 0.773809909820556 0.000463287492606268 hm5C_site_52310 DeepMRMD:0.773809909820556;iRNA_m5C:0.000463287492606268 52311 chr5 145838674 145838674 1 + A G COAD 145838674 - 145838654 145838694 41 GCCTGGGCCTGGGCTTGGGCTTGGGCCTGGGCCTGGGCCTG GCCTGGGCCTGGGCTTGGGCCTGGGCCTGGGCCTGGGCCTG Direct Gain 0 0.939606202474878 0 0.478532046079636 prediction 0.879212404949755 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145838674 chr5:145838674 synonymous SNV . 0 21 hm5C_associated_SNPs_132253 0 0 0 0 0 Nucleus 0 0.500231643921092 0 0.000463287842184856 hm5C_site_52311 DeepMRMD:0;iRNA_m5C:0.000463287842184856 52312 chr19 10801805 10801805 1 + G C rs368770177 10801805 + 10801785 10801825 41 TCAGCAGACCTCGTGTTTAAGGAGAGAATGCCTGCCTGCAA TCAGCAGACCTCGTGTTTAACGAGAGAATGCCTGCCTGCAA Direct Gain 0 0.939602638669002 0 0.702849566936493 prediction 0.879205277338003 Functional Gain - ILF3 ENSG00000129351 UTR3 Human protein_coding chr19:10801805 chr19:10801805 . . 0 21 hm5C_associated_SNPs_132254 0 0 1 0 0 Cytosol 0 0.500231636781287 0.405699133872986 0.000463273562573363 hm5C_site_52312 DeepMRMD:0.405699133872986;iRNA_m5C:0.000463273562573363 52313 chr17 37819124 37819124 1 + T C UCEC 37819124 + 37819104 37819144 41 GTTTGAATTTGCCTTTCACCTGCGACAGCGCATCAGCGAGC GTTTGAATTTGCCTTTCACCCGCGACAGCGCATCAGCGAGC Direct Gain 0 0.939586339711337 0 0.768528938293457 prediction 0.879172679422673 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37819124 chr17:37819124 nonsynonymous SNV 0.995 4 21 hm5C_associated_SNPs_132255 0 0 1 1 1 Ribosome 0 0.500231634405312 0.537057876586914 0.000463268810623196 hm5C_site_52313 DeepMRMD:0.537057876586914;iRNA_m5C:0.000463268810623196 52314 chr19 58549366 58549366 1 + C G rs159870 58549366 - 58549346 58549386 41 GTCCAGAGCTGGCCCAGCGCGAGGTGCGGCCCGCTCGCCAC GTCCAGAGCTGGCCCAGCGCCAGGTGCGGCCCGCTCGCCAC Direct Gain 0 0.939586211764395 0 0.894293665885925 prediction 0.87917242352879 Functional Gain - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58549366 chr19:58549366 synonymous SNV . 0 21 hm5C_associated_SNPs_132256 0 0 0 0 0 exosome 0 0.500231643921092 0.78858733177185 0.000463287842184856 hm5C_site_52314 DeepMRMD:0.78858733177185;iRNA_m5C:0.000463287842184856 52315 chr19 13084374 13084374 1 + A G LUSC 13084374 - 13084354 13084394 41 CCGTCGACGGGAGGCTGAGCTGCCAGTGAGACACCACAGGA CCGTCGACGGGAGGCTGAGCCGCCAGTGAGACACCACAGGA Direct Gain 0 0.939563145159327 0 0.898602247238159 prediction 0.879126290318654 Functional Gain - DAND5 ENSG00000179284 CDS Human protein_coding chr19:13084374 chr19:13084374 nonsynonymous SNV 0.006 0 21 hm5C_associated_SNPs_132257 0 0 0 0 0 Nucleus 0 0.500231996242511 0.797204494476318 0.000463992485021381 hm5C_site_52315 DeepMRMD:0.797204494476318;iRNA_m5C:0.000463992485021381 52316 chr17 27183340 27183340 1 + A G UCEC 27183340 - 27183320 27183360 41 GCTCCCAGGAGGACCACTCGTAGGACCCGGGAATTCTCAGG GCTCCCAGGAGGACCACTCGCAGGACCCGGGAATTCTCAGG Direct Gain 0 0.939559297415269 0 0.707140266895294 prediction 0.879118594830538 Functional Gain - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27183340 chr17:27183340 synonymous SNV . 0 21 hm5C_associated_SNPs_132258 0 0 0 0 0 Ribosome 0 0.500231643921092 0.414280533790588 0.000463287842184856 hm5C_site_52316 DeepMRMD:0.414280533790588;iRNA_m5C:0.000463287842184856 52317 chr16 25078338 25078338 1 + G C rs11643556 25078338 + 25078318 25078358 41 TAGCCGACCAAGCCCCGGAAGGCGAGTGCCGGAGGGGGCGG TAGCCGACCAAGCCCCGGAACGCGAGTGCCGGAGGGGGCGG Direct Gain 0 0.939539652252462 0 0.796005725860596 prediction 0.879079304504924 Functional Gain - LINC02175 ENSG00000262155 ncRNA_exonic Human lincRNA chr16:25078338 chr16:25078338 . . 0 21 hm5C_associated_SNPs_132259 0 0 0 0 0 unknown 0 0.500231643921092 0.592011451721192 0.000463287842184856 hm5C_site_52317 DeepMRMD:0.592011451721192;iRNA_m5C:0.000463287842184856 52318 chr17 41166208 41166208 1 + G C LUSC 41166208 + 41166188 41166228 41 CCGGAGCTGCATGACGTCCTGGAGATCCACTTCCAGAAGCC CCGGAGCTGCATGACGTCCTCGAGATCCACTTCCAGAAGCC Direct Gain 0 0.939512973202039 0 0.858582019805908 prediction 0.879025946404077 Functional Gain - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41166208 chr17:41166208 synonymous SNV . 0 21 hm5C_associated_SNPs_132260 0 0 1 0 1 Cytosol 0 0.500231643920831 0.717164039611816 0.000463287841661941 hm5C_site_52318 DeepMRMD:0.717164039611816;iRNA_m5C:0.000463287841661941 52319 chr10 87405975 87405975 1 + T C rs149012664 87405975 + 87405955 87405995 41 TGGGTCTGGGAGGGAAAGGATGGGAGGAGACACTGAGGCAG TGGGTCTGGGAGGGAAAGGACGGGAGGAGACACTGAGGCAG Direct Gain 0 0.939505799702419 0 0.866906523704529 prediction 0.879011599404838 Functional Gain - GRID1 ENSG00000270002 ncRNA_exonic Human antisense chr10:87405975 chr10:87405975 . . 0 21 hm5C_associated_SNPs_132261 0 0 0 0 0 nucleoplasm 0 0.500231643921093 0.733813047409058 0.000463287842185744 hm5C_site_52319 DeepMRMD:0.733813047409058;iRNA_m5C:0.000463287842185744 52320 chr1 155403495 155403495 1 + T C rs147337601 155403495 + 155403475 155403515 41 GCTCACCCTGGGGGTTCTATTTGGGAAGGTGTTCAGCCAAA GCTCACCCTGGGGGTTCTATCTGGGAAGGTGTTCAGCCAAA Direct Gain 0 0.939503441406233 0 0.830974221229553 prediction 0.879006882812467 Functional Gain - POU5F1P4 ENSG00000237872 ncRNA_exonic Human processed_pseudogene chr1:155403495 chr1:155403495 . . 0 21 hm5C_associated_SNPs_132262 0 0 0 0 0 unknown 0 0.500231643921092 0.661948442459106 0.000463287842184856 hm5C_site_52320 DeepMRMD:0.661948442459106;iRNA_m5C:0.000463287842184856 52321 chr16 28847651 28847651 1 + T C COAD 28847651 + 28847631 28847671 41 GCACCTGTCTGTGAAGTATGTAGGGTGGGCAGAAGCCACAG GCACCTGTCTGTGAAGTATGCAGGGTGGGCAGAAGCCACAG Direct Gain 0 0.939501461617796 0 0.887126505374908 prediction 0.879002923235593 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847651 chr16:28847651 synonymous SNV . 0 21 hm5C_associated_SNPs_132263 0 0 1 0 1 Cytosol 0 0.500231643922152 0.774253010749816 0.00046328784430405 hm5C_site_52321 DeepMRMD:0.774253010749816;iRNA_m5C:0.00046328784430405 52322 chr12 105380132 105380132 1 + T C LUAD 105380132 + 105380112 105380152 41 GTGCAGGCTTGAGGGAAGCATGGAGGTCCATGGCAAGCCCA GTGCAGGCTTGAGGGAAGCACGGAGGTCCATGGCAAGCCCA Direct Gain 0 0.939486711286004 0 0.571691930294037 prediction 0.878973422572007 Functional Gain - C12orf45 ENSG00000151131 CDS Human protein_coding chr12:105380132 chr12:105380132 nonsynonymous SNV 0.575 2 21 hm5C_associated_SNPs_132264 0 0 1 0 0 Ribosome 0 0.500231643891481 0.143383860588074 0.000463287782962229 hm5C_site_52322 DeepMRMD:0.143383860588074;iRNA_m5C:0.000463287782962229 52323 chr11 60557863 60557863 1 + T C rs144089314 60557863 + 60557843 60557883 41 GTGCTAGGGGGCTCCCATCATGGCAAGTCCTCAGCCCAGTC GTGCTAGGGGGCTCCCATCACGGCAAGTCCTCAGCCCAGTC Direct Gain 0 0.939471402374544 0 0.88886034488678 prediction 0.878942804749089 Functional Gain - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60557863 chr11:60557863 nonsynonymous SNV 0.017 0 21 hm5C_associated_SNPs_132265 0 0 0 0 1 Nucleus 0 0.500231643921092 0.77772068977356 0.000463287842184856 hm5C_site_52323 DeepMRMD:0.77772068977356;iRNA_m5C:0.000463287842184856 52324 chr15 22743398 22743398 1 + T C COAD 22743398 + 22743378 22743418 41 GAGAGCAGGAGGAGAAGATATGGGAGCAGGAGGAGAAGATA GAGAGCAGGAGGAGAAGATACGGGAGCAGGAGGAGAAGATA Direct Gain 0 0.939458883815228 0 0.808401226997375 prediction 0.878917767630457 Functional Gain - GOLGA6L1;GOLGA6L22 ENSG00000197414 CDS Human other chr15:22743398 chr15:22743398 nonsynonymous SNV 0.002 0 21 hm5C_associated_SNPs_132266 0 0 0 0 0 unknown 0 0.500231643921092 0.61680245399475 0.000463287842184856 hm5C_site_52324 DeepMRMD:0.61680245399475;iRNA_m5C:0.000463287842184856 52325 chrX 53115871 53115871 1 + T C rs782449805 53115871 + 53115851 53115891 41 GCGCATTTCCAGGCTTGTGTTGGGAGCAGAGCATGAAGTGA GCGCATTTCCAGGCTTGTGTCGGGAGCAGAGCATGAAGTGA Direct Gain 0 0.939442842327433 0 0.948727071285248 prediction 0.878885684654866 Functional Gain - TSPYL2 ENSG00000184205 intronic Human protein_coding chrX:53115871 chrX:53115871 . . 0 21 hm5C_associated_SNPs_132267 0 0 0 0 0 chromatin 0 0.500231643919898 0.897454142570496 0.0004632878397961 hm5C_site_52325 DeepMRMD:0.897454142570496;iRNA_m5C:0.0004632878397961 52326 chr19 55900174 55900174 1 + A C rs118132990 55900174 + 55900154 55900194 41 ATGAGATGACTTTTGCATCCAGGGAGTGGGTGCAGCCACAT ATGAGATGACTTTTGCATCCCGGGAGTGGGTGCAGCCACAT Direct Gain 0 0.939439714612665 0 0.727132439613342 prediction 0.878879429225329 Functional Gain - RPL28 ENSG00000108107 UTR3 Human protein_coding chr19:55900174 chr19:55900174 . . 0 21 hm5C_associated_SNPs_132268 0 0 1 0 0 Cytosol 0 0.500231642491231 0.454264879226684 0.000463284982462842 hm5C_site_52326 DeepMRMD:0.454264879226684;iRNA_m5C:0.000463284982462842 52327 chr10 94449818 94449818 1 + A G UCEC 94449818 - 94449798 94449838 41 AAGGGCGTCGGGTGTGCGGGTTGCAGCAGCGGCGTGGGCGC AAGGGCGTCGGGTGTGCGGGCTGCAGCAGCGGCGTGGGCGC Direct Gain 0 0.939438604067438 0 0.587139129638672 prediction 0.878877208134877 Functional Gain - HHEX ENSG00000152804 CDS Human protein_coding chr10:94449818 chr10:94449818 synonymous SNV . 0 21 hm5C_associated_SNPs_132269 0 0 0 0 0 cytosol 0 0.500231284195803 0.174278259277344 0.000462568391605966 hm5C_site_52327 DeepMRMD:0.174278259277344;iRNA_m5C:0.000462568391605966 52328 chr6 37447980 37447980 1 + T C rs559331735 37447980 + 37447960 37448000 41 ATTCCTGAGATGGGGCCACCTGGGGCCCACAGTGCTGGCTT ATTCCTGAGATGGGGCCACCCGGGGCCCACAGTGCTGGCTT Direct Gain 0 0.939438182305577 0 0.949938654899597 prediction 0.878876364611153 Functional Gain - CMTR1 ENSG00000137200 UTR3 Human protein_coding chr6:37447980 chr6:37447980 . . 0 21 hm5C_associated_SNPs_132270 0 0 0 0 0 Endoplasmic reticulum 0 0.500231643921092 0.899877309799194 0.000463287842184856 hm5C_site_52328 DeepMRMD:0.899877309799194;iRNA_m5C:0.000463287842184856 52329 chr10 12171644 12171644 1 + G C rs548622476 12171644 + 12171624 12171664 41 CGCGGGTCAGGTGGCGAAGGGCGGAGTCTGCGCGGGGTTGG CGCGGGTCAGGTGGCGAAGGCCGGAGTCTGCGCGGGGTTGG Direct Gain 0 0.939436408876603 0 0.717281103134155 prediction 0.878872817753205 Functional Gain - SEC61A2 ENSG00000065665 UTR5 Human protein_coding chr10:12171644 chr10:12171644 . . 0 21 hm5C_associated_SNPs_132271 0 0 0 0 0 Ribosome 0 0.500231643921114 0.43456220626831 0.000463287842227489 hm5C_site_52329 DeepMRMD:0.43456220626831;iRNA_m5C:0.000463287842227489 52330 chr4 25334974 25334974 1 + A C OV 25334974 + 25334954 25334994 41 TCCTTTATCCACTGGAAAACAAGAAGACAAATGCCCAGTAT TCCTTTATCCACTGGAAAACCAGAAGACAAATGCCCAGTAT Direct Gain 0 0.939434712041584 0 0.544879555702209 prediction 0.878869424083169 Functional Gain - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25334974 chr4:25334974 nonsynonymous SNV 0.999 2 21 hm5C_associated_SNPs_132272 0 0 1 0 0 chromatin 0 0.500231643910832 0.0897591114044181 0.00046328782166416 hm5C_site_52330 DeepMRMD:0.0897591114044181;iRNA_m5C:0.00046328782166416 52331 chr16 56920317 56920317 1 + C A LUAD 56920313 + 56920293 56920333 41 TCACGGGGCCCCCCAACTTCCGCCCGGCCCTGGTGGACTTT TCACGGGGCCCCCCAACTTCCGCCAGGCCCTGGTGGACTTT < 41bp 0.49755063104338 0.867949015252771 0.1086517 0.40913802 prediction 0.735898030505543 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920313 chr16:56920317 nonsynonymous SNV 0.852 5 25 hm5C_associated_SNPs_99186 0 0 0 0 2 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_52331 DeepMRMD:0;iRNA_m5C:0 52332 chr14 78397898 78397898 1 + C A MESO 78397894 + 78397874 78397914 41 GCAACAACGCGGCCAACTACCTCCCCCAGATCAGCCATCTC GCAACAACGCGGCCAACTACCTCCACCAGATCAGCCATCTC < 41bp 0.483552329808429 0.867817723330563 0.13441682 0.9401475 prediction 0.735635446661126 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78397894 chr14:78397898 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_99187 0 0 0 0 1 chromatin 0.50023164390765 0.500231644069888 0.880295 3.24475113444578e-10 hm5C_site_52332 DeepMRMD:0.880295;iRNA_m5C:3.24475113444578e-10 52333 chr19 48284382 48284382 1 + C A COAD 48284378 + 48284358 48284398 41 TCCTCAGTGCGGCGAGGGAACTCCCCAGGCCACCGGGTTCT TCCTCAGTGCGGCGAGGGAACTCCACAGGCCACCGGGTTCT < 41bp 0.497094038515782 0.86759939371329 0.32745096 0.95156604 prediction 0.73519878742658 Functional Gain - SELENOW ENSG00000178980 CDS Human protein_coding chr19:48284378 chr19:48284382 synonymous SNV . 0 25 hm5C_associated_SNPs_99188 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643920227 0.90313208 0 hm5C_site_52333 DeepMRMD:0.90313208;iRNA_m5C:0 52334 chr3 129268029 129268029 1 + C A ESCA 129268025 + 129268005 129268045 41 AGCAAAGGTGCAGAAGCCTCCTCCCAAGCCAGGCGCAGCCA AGCAAAGGTGCAGAAGCCTCCTCCAAAGCCAGGCGCAGCCA < 41bp 0.498180737624447 0.866982559068891 0.20781848 0.9403676 prediction 0.733965118137782 Functional Gain - H1FOO ENSG00000178804 CDS Human protein_coding chr3:129268025 chr3:129268029 synonymous SNV . 0 25 hm5C_associated_SNPs_99189 0 0 0 0 0 unknown 0.50023168591879 0.500231643921095 0.8807352 0 hm5C_site_52334 DeepMRMD:0.8807352;iRNA_m5C:0 52335 chr20 2375157 2375157 1 + C A LUAD 2375153 + 2375133 2375173 41 AGGAATGGCGCTGCCCACCACACCCAGGAGTACCCCTGCCC AGGAATGGCGCTGCCCACCACACCAAGGAGTACCCCTGCCC < 41bp 0.497134182307897 0.865617460851034 0.051035166 0.31029204 prediction 0.731234921702068 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2375153 chr20:2375157 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99190 0 0 0 0 1 exosome 0.500231621836073 0.500231643925603 0 4.41790601879433e-08 hm5C_site_52335 DeepMRMD:0;iRNA_m5C:4.41790601879433e-08 52336 chr17 15644474 15644474 1 + C A ESCA 15644470 + 15644450 15644490 41 CAGGGACCTGAGCCGCATCACTGCCATCCTCCTCCTGTGTC CAGGGACCTGAGCCGCATCACTGCAATCCTCCTCCTGTGTC < 41bp 0.50578701801663 0.870923144626515 0.15798002 0.383938 prediction 0.730272253219771 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644470 chr17:15644474 synonymous SNV . 0 25 hm5C_associated_SNPs_99191 0 0 0 4 2 exosome 0.500231643921091 0.500231643932672 0 2.31623609181497e-11 hm5C_site_52336 DeepMRMD:0;iRNA_m5C:2.31623609181497e-11 52337 chr3 51978533 51978533 1 + C A COAD 51978529 + 51978509 51978549 41 AGCGGGACCACTTTGTGTCTCACCCGGGCAAGTACACACTT AGCGGGACCACTTTGTGTCTCACCAGGGCAAGTACACACTT < 41bp 0.499436226387155 0.86475625731098 0.24274221 0.84634656 prediction 0.729512514621961 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51978529 chr3:51978533 nonsynonymous SNV 0.374 2 25 hm5C_associated_SNPs_99192 0 0 1 0 1 nucleus 0.500231643843408 0.500231643913958 0.69269312 1.41098910333426e-10 hm5C_site_52337 DeepMRMD:0.69269312;iRNA_m5C:1.41098910333426e-10 52338 chr17 51900838 51900838 1 + C A UCEC 51900834 + 51900814 51900854 41 TCTGATGAAGCAGAAAAAGTCTCCCTGCCTCTGGGAAATCC TCTGATGAAGCAGAAAAAGTCTCCATGCCTCTGGGAAATCC < 41bp 0.495913025267565 0.864662018377605 0.4080922 0.94706535 prediction 0.72932403675521 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51900834 chr17:51900838 synonymous SNV . 0 25 hm5C_associated_SNPs_99193 0 0 0 0 0 exosome 0.500232619320362 0.500231630392156 0.8941307 0 hm5C_site_52338 DeepMRMD:0.8941307;iRNA_m5C:0 52339 chr2 27147881 27147881 1 + C A SKCM 27147877 + 27147857 27147897 41 CCCAAGGTCTGCTGTGATTACGCCCTCCACGTGGGGATCAC CCCAAGGTCTGCTGTGATTACGCCATCCACGTGGGGATCAC < 41bp 0.505387168947449 0.869960754165515 0.23699728 0.48597097 prediction 0.729147170436133 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27147877 chr2:27147881 nonsynonymous SNV 0.969 4 25 hm5C_associated_SNPs_99194 0 0 1 0 1 Ribosome 0.500231643883623 0.500241026981529 0 1.87661958106489e-05 hm5C_site_52339 DeepMRMD:0;iRNA_m5C:1.87661958106489e-05 52340 chr18 72173231 72173231 1 + C A LUSC 72173227 + 72173207 72173247 41 GGCTGGGACAGCGAGCCCTTCACCCTGGTGGAGCGAGACGG GGCTGGGACAGCGAGCCCTTCACCATGGTGGAGCGAGACGG < 41bp 0.495928036349918 0.864237250760593 0.28489125 0.23248833 prediction 0.728474501521187 Functional Gain - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72173227 chr18:72173231 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_99195 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52340 DeepMRMD:0;iRNA_m5C:0 52341 chr14 21458471 21458471 1 + C A UCEC 21458467 + 21458447 21458487 41 AGAAGAGGCCTCATCGCCAGCACCCTGGCATCCTAAAGCTG AGAAGAGGCCTCATCGCCAGCACCATGGCATCCTAAAGCTG < 41bp 0.503447612009242 0.867335852013014 0.120527774 0.17084694 prediction 0.727776480007544 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21458467 chr14:21458471 nonsynonymous SNV 0.616 4 25 hm5C_associated_SNPs_99196 0 0 1 0 2 Ribosome 0.500231643920988 0.50023164636363 0 4.88528306696878e-09 hm5C_site_52341 DeepMRMD:0;iRNA_m5C:4.88528306696878e-09 52342 chr11 117152789 117152789 1 + C A STAD 117152785 + 117152765 117152805 41 CCAGCCTTCCTCACCCCTTCCTGGCTCCCATGGCAGAAATA CCAGCCTTCCTCACCCCTTCCTGGATCCCATGGCAGAAATA < 41bp 0.499602633601795 0.863217493274041 0.14312363 0.31686783 prediction 0.726434986548081 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152785 chr11:117152789 synonymous SNV . 0 25 hm5C_associated_SNPs_99197 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_52342 DeepMRMD:0;iRNA_m5C:0 52343 chr9 131289797 131289797 1 + C A UCEC 131289793 + 131289773 131289813 41 CATCCCAGTGAGCCAAATCTCTACCATTGCAGGTTGGTCAG CATCCCAGTGAGCCAAATCTCTACAATTGCAGGTTGGTCAG < 41bp 0.510919772971945 0.873891238379822 0.17834008 0.5986419 prediction 0.725942930815753 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131289793 chr9:131289797 synonymous SNV . 0 25 hm5C_associated_SNPs_99198 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.1972838 0 hm5C_site_52343 DeepMRMD:0.1972838;iRNA_m5C:0 52344 chr16 55525775 55525775 1 + C A SARC 55525771 + 55525751 55525791 41 CACGCCATGGGGCTGGAGCACTCCCAAGACCCTGGGGCCCT CACGCCATGGGGCTGGAGCACTCCAAAGACCCTGGGGCCCT < 41bp 0.46884629231685 0.862803650484194 0.20575368 0.97212243 prediction 0.725607300968389 Functional Gain - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55525771 chr16:55525775 nonsynonymous SNV 0.976 0 25 hm5C_associated_SNPs_99199 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643920937 0.94424486 0 hm5C_site_52344 DeepMRMD:0.94424486;iRNA_m5C:0 52345 chr11 45949117 45949117 1 + C A STAD 45949113 + 45949093 45949133 41 TCCTCAGTGACATTGACTTCCTGCCTGCCTATTCTCTCTAC TCCTCAGTGACATTGACTTCCTGCATGCCTATTCTCTCTAC < 41bp 0.493493132124838 0.862672498087225 0.018456519 0.0928154 prediction 0.725344996174451 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949113 chr11:45949117 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_99200 0 0 1 0 1 chromatin 0.500231642194059 0.500231641197169 0 0 hm5C_site_52345 DeepMRMD:0;iRNA_m5C:0 52346 chr2 3749189 3749189 1 + C A COAD 3749185 + 3749165 3749205 41 TGATCAGGCAAAAGTGGATTCTCCCGGCCCACAAGTGGAAA TGATCAGGCAAAAGTGGATTCTCCAGGCCCACAAGTGGAAA < 41bp 0.48442739689041 0.862640745476122 0.16875973 0.94655913 prediction 0.725281490952244 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3749185 chr2:3749189 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_99201 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0.89311826 0 hm5C_site_52346 DeepMRMD:0.89311826;iRNA_m5C:0 52347 chr11 15170767 15170767 1 + C A STAD 15170763 + 15170743 15170783 41 GCCACCTGGACTCCGTCACCCTGCCGGGTCAGCGGTAAGTC GCCACCTGGACTCCGTCACCCTGCAGGGTCAGCGGTAAGTC < 41bp 0.500948893441946 0.863372278035106 0.21192697 0.33768222 prediction 0.724846769186321 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15170763 chr11:15170767 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_99202 0 0 0 0 2 exosome 0.500231643921092 0.500231643921988 0 1.79167791714008e-12 hm5C_site_52347 DeepMRMD:0;iRNA_m5C:1.79167791714008e-12 52348 chr20 30115332 30115332 1 + C A SARC 30115328 + 30115308 30115348 41 ACAATCACCAGCCGGGATGCCGCCCGCTTCCCCATCATCGC ACAATCACCAGCCGGGATGCCGCCAGCTTCCCCATCATCGC < 41bp 0.484413974660626 0.862315957309795 0.15398163 0.39154643 prediction 0.72463191461959 Functional Gain - HM13 ENSG00000101294 CDS Human protein_coding chr20:30115328 chr20:30115332 nonsynonymous SNV 0.963 1 25 hm5C_associated_SNPs_99203 0 0 1 0 2 Ribosome 0.500231643921092 0.50023166057684 0 3.33114964501391e-08 hm5C_site_52348 DeepMRMD:0;iRNA_m5C:3.33114964501391e-08 52349 chr1 167095353 167095353 1 + C A COAD 167095349 + 167095329 167095369 41 GCCAGCCACCTGAGTGGCTCCTCCCTGGGGAAGGCCACCCA GCCAGCCACCTGAGTGGCTCCTCCATGGGGAAGGCCACCCA < 41bp 0.490159058739639 0.861861995193621 0.36598402 0.97581446 prediction 0.723723990387241 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167095349 chr1:167095353 nonsynonymous SNV 0.845 0 25 hm5C_associated_SNPs_99204 0 0 0 0 0 Endoplasmic reticulum 0.500231644047657 0.5002316820507 0.95162892 7.60060843152388e-08 hm5C_site_52349 DeepMRMD:0.95162892;iRNA_m5C:7.60060843152388e-08 52350 chr19 54652128 54652128 1 + C A STAD 54652124 + 54652104 54652144 41 CCAGGCTGTGGCCCCACCAGCTCCCAGTGGGCCCAGCACGA CCAGGCTGTGGCCCCACCAGCTCCAAGTGGGCCCAGCACGA < 41bp 0.493576905990341 0.861846766994526 0.025624454 0.7995786 prediction 0.723693533989052 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54652124 chr19:54652128 synonymous SNV . 0 25 hm5C_associated_SNPs_99205 0 0 1 0 0 Ribosome 0.500231643832433 0.500231643920642 0.5991572 1.76416437014382e-10 hm5C_site_52350 DeepMRMD:0.5991572;iRNA_m5C:1.76416437014382e-10 52351 chr19 55494060 55494060 1 + C A LUAD 55494056 + 55494036 55494076 41 AGGGTGATGTTACCCAAGGCCGCCCTGCTGGTCACCACGCG AGGGTGATGTTACCCAAGGCCGCCATGCTGGTCACCACGCG < 41bp 0.506829522956121 0.868673007274915 0.119861186 0.7485863 prediction 0.723686968637589 Functional Gain - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55494056 chr19:55494060 nonsynonymous SNV 0.338 4 25 hm5C_associated_SNPs_99206 0 0 1 0 0 Cytosol 0.500231643921092 0.500231686612974 0.4971726 8.53837638370436e-08 hm5C_site_52351 DeepMRMD:0.4971726;iRNA_m5C:8.53837638370436e-08 52352 chr7 143048740 143048740 1 + C A LUAD 143048736 + 143048716 143048756 41 GTCTGGGGTGCAGCTCCGCCCTCCCCTTGCCAGCTTCCGGA GTCTGGGGTGCAGCTCCGCCCTCCACTTGCCAGCTTCCGGA < 41bp 0.496034167867086 0.861796981180574 0.06886825 0.93016255 prediction 0.723593962361148 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143048736 chr7:143048740 synonymous SNV . 0 25 hm5C_associated_SNPs_99207 0 0 0 0 1 exosome 0.500231643769844 0.500231643920988 0.8603251 3.02287972431259e-10 hm5C_site_52352 DeepMRMD:0.8603251;iRNA_m5C:3.02287972431259e-10 52353 chr8 1575027 1575027 1 + C A LUAD 1575023 + 1575003 1575043 41 AGCTACATGAGGGCCGTCAGCACCCTGAGCCAGGCCAGCTG AGCTACATGAGGGCCGTCAGCACCATGAGCCAGGCCAGCTG < 41bp 0.495234111422015 0.861761159918322 0.37406677 0.3689437 prediction 0.723522319836643 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1575023 chr8:1575027 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99208 0 0 0 0 1 nucleolus 0.500231632566024 0.500231601763532 0 0 hm5C_site_52353 DeepMRMD:0;iRNA_m5C:0 52354 chr16 81303986 81303986 1 + C A UCEC 81303982 + 81303962 81304002 41 TCCAGGCTCACCTCGGTCCCCACCCTCAGGAGGTTTGCCGT TCCAGGCTCACCTCGGTCCCCACCATCAGGAGGTTTGCCGT < 41bp 0.484274196019405 0.861621629790538 0.029781908 0.21153426 prediction 0.723243259581076 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81303982 chr16:81303986 nonsynonymous SNV 0.665 2 25 hm5C_associated_SNPs_99209 0 0 0 0 1 exosome 0.500231643921103 0.500231643921161 0 1.16351372980716e-13 hm5C_site_52354 DeepMRMD:0;iRNA_m5C:1.16351372980716e-13 52355 chr9 82333694 82333694 1 + C A UCEC 82333690 + 82333670 82333710 41 GATGCAGCCTGTCCCTTTTCCACCCGACGCCCTCATCGGAC GATGCAGCCTGTCCCTTTTCCACCAGACGCCCTCATCGGAC < 41bp 0.508930659732808 0.870282986706386 0.102614254 0.11411086 prediction 0.722704653947155 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82333690 chr9:82333694 synonymous SNV . 0 25 hm5C_associated_SNPs_99210 0 0 0 0 1 Endoplasmic reticulum 0.500231643905354 0.500231643921092 0 3.14759329711478e-11 hm5C_site_52355 DeepMRMD:0;iRNA_m5C:3.14759329711478e-11 52356 chr1 156702098 156702098 1 + C A UCEC 156702094 + 156702074 156702114 41 TACAGGTCAGTGTGGCCACTCACCCTGCTGGCCCTGAAGTC TACAGGTCAGTGTGGCCACTCACCATGCTGGCCCTGAAGTC < 41bp 0.504767635375301 0.865983160768919 0.04272896 0.10593042 prediction 0.722431050787236 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702094 chr1:156702098 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_99211 0 0 1 0 1 chromatin 0.500231643920687 0.50023164425677 0 6.72166322601697e-10 hm5C_site_52356 DeepMRMD:0;iRNA_m5C:6.72166322601697e-10 52357 chr1 205039107 205039107 1 + C A HNSC 205039103 + 205039083 205039123 41 CGAGAGCGTCCGGCCCTACACGCCCTTTGAGGTCAAGATCC CGAGAGCGTCCGGCCCTACACGCCATTTGAGGTCAAGATCC < 41bp 0.509424927834678 0.870439058339203 0.07732433 0.8524568 prediction 0.722028261009049 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205039103 chr1:205039107 synonymous SNV . 0 25 hm5C_associated_SNPs_99212 0 0 0 0 1 exosome 0.500231643921092 0.500231788104901 0.7049136 2.88367616674279e-07 hm5C_site_52357 DeepMRMD:0.7049136;iRNA_m5C:2.88367616674279e-07 52358 chrX 149638714 149638714 1 + C A UCEC 149638710 + 149638690 149638730 41 AGAGCCAGGTCCAGGCCATGCTCCCTGTCGCTCTGCCCCCC AGAGCCAGGTCCAGGCCATGCTCCATGTCGCTCTGCCCCCC < 41bp 0.478586651496357 0.860969804510117 0.29171216 0.9474687 prediction 0.721939609020233 Functional Gain - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149638710 chrX:149638714 nonsynonymous SNV 0.269 3 25 hm5C_associated_SNPs_99213 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643920443 0.8949374 0 hm5C_site_52358 DeepMRMD:0.8949374;iRNA_m5C:0 52359 chr1 32043005 32043005 1 + C A UCEC 32043001 + 32042981 32043021 41 AACCGCACGGTCTCCGACTGCTGCCCTGACTTCTGGGACTT AACCGCACGGTCTCCGACTGCTGCACTGACTTCTGGGACTT < 41bp 0.504056602143523 0.864928915911934 0.07591879 0.10723421 prediction 0.72174462753682 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32043001 chr1:32043005 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99214 0 0 0 0 1 Ribosome 0.500231645143457 0.50023173490417 0 1.79521425280882e-07 hm5C_site_52359 DeepMRMD:0;iRNA_m5C:1.79521425280882e-07 52360 chr1 22924315 22924315 1 + C A LUSC 22924311 + 22924291 22924331 41 GCGTCCATCATGGGGCAATTCGACCATCCCAACATCATCCG GCGTCCATCATGGGGCAATTCGACAATCCCAACATCATCCG < 41bp 0.494837180214835 0.860855772975934 0.20560896 0.17845708 prediction 0.721711545951869 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22924311 chr1:22924315 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_99215 0 0 0 0 1 exosome 0.500231642203901 0.500232313420999 0 1.34243419647184e-06 hm5C_site_52360 DeepMRMD:0;iRNA_m5C:1.34243419647184e-06 52361 chr12 120750736 120750736 1 + C A THCA 120750732 + 120750712 120750752 41 TCACTGCCTGGGAGAAGAAGCTCCCGATTGCAATACTGAAC TCACTGCCTGGGAGAAGAAGCTCCAGATTGCAATACTGAAC < 41bp 0.498716224501615 0.860838933915396 0.14682001 0.90073717 prediction 0.721677867830793 Functional Gain - SIRT4 ENSG00000089163 CDS Human protein_coding chr12:120750732 chr12:120750736 nonsynonymous SNV 0.290 4 25 hm5C_associated_SNPs_99216 0 0 0 0 1 Cytosol 0.500231643921123 0.500231643936478 0.80147434 3.07105452179712e-11 hm5C_site_52361 DeepMRMD:0.80147434;iRNA_m5C:3.07105452179712e-11 52362 chr1 147380964 147380964 1 + C A LUAD 147380960 + 147380940 147380980 41 GGTGGAGACCAGCCCACTGCCTGCCAAGCCTTTCAATCAGT GGTGGAGACCAGCCCACTGCCTGCAAAGCCTTTCAATCAGT < 41bp 0.48872056512012 0.860747953910376 0.02164644 0.40308166 prediction 0.721495907820751 Functional Gain - GJA8 ENSG00000121634 CDS Human protein_coding chr1:147380960 chr1:147380964 synonymous SNV . 0 25 hm5C_associated_SNPs_99217 0 0 0 0 0 unknown 0.500231645144044 0.500231643981316 0 0 hm5C_site_52362 DeepMRMD:0;iRNA_m5C:0 52363 chr16 10855685 10855685 1 + C A LUSC 10855681 + 10855661 10855701 41 GTGCCAGGACTTGGAGGTCCCTCTCCTCGGCAGAGTGCCCC GTGCCAGGACTTGGAGGTCCCTCTACTCGGCAGAGTGCCCC < 41bp 0.504445588222435 0.864934737663545 0.058582574 0.57778096 prediction 0.720978298882218 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10855681 chr16:10855685 synonymous SNV . 0 25 hm5C_associated_SNPs_99218 0 0 0 0 2 Ribosome 0.500231643921148 0.500231643921092 0.15556192 0 hm5C_site_52363 DeepMRMD:0.15556192;iRNA_m5C:0 52364 chr11 60885796 60885796 1 + C A LUAD 60885792 + 60885772 60885812 41 CCCAGTCAAGCGTCAAAAGTCTGCCAGCGGCTGAACTGTGG CCCAGTCAAGCGTCAAAAGTCTGCAAGCGGCTGAACTGTGG < 41bp 0.508493128000946 0.868774110284574 0.17616642 0.4282236 prediction 0.720561964567256 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60885792 chr11:60885796 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_99219 0 0 0 0 0 exosome 0.500231661178065 0.500169333358845 0 0 hm5C_site_52364 DeepMRMD:0;iRNA_m5C:0 52365 chr11 70028646 70028646 1 + C A LUSC 70028642 + 70028622 70028662 41 CTTCACGTCTGACTTCATCCCGCGCCTGGTGTACCTCTACA CTTCACGTCTGACTTCATCCCGCGACTGGTGTACCTCTACA < 41bp 0.493164788659852 0.860121342853593 0.098676205 0.076497465 prediction 0.720242685707186 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70028642 chr11:70028646 synonymous SNV . 0 25 hm5C_associated_SNPs_99220 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921096 0 7.32747196252603e-15 hm5C_site_52365 DeepMRMD:0;iRNA_m5C:7.32747196252603e-15 52366 chr19 17448978 17448978 1 + C A rs542667981 17448974 + 17448954 17448994 41 TTCTCACAGCACCCCGAGACCTGCCCCTTGCTCGCCACGCC TTCTCACAGCACCCCGAGACCTGCACCTTGCTCGCCACGCC < 41bp 0.495329032592533 0.860095711623273 0.058780044 0.12525007 prediction 0.720191423246547 Functional Gain - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17448974 chr19:17448978 nonsynonymous SNV 0.064 4 25 hm5C_associated_SNPs_99221 0 0 1 0 0 Ribosome 0.500231643932064 0.500204856642652 0 0 hm5C_site_52366 DeepMRMD:0;iRNA_m5C:0 52367 chr4 37848697 37848697 1 + C A UCEC 37848693 + 37848673 37848713 41 AGCACCGTCTCCTCCAAAATCTTGCGGGCCATTGCCTTAAA AGCACCGTCTCCTCCAAAATCTTGAGGGCCATTGCCTTAAA < 41bp 0.504759388000764 0.864756295604313 0.10931614 0.21490777 prediction 0.719993815207099 Functional Gain - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37848693 chr4:37848697 synonymous SNV . 0 25 hm5C_associated_SNPs_99222 0 0 0 0 1 Nucleus 0.500231643881637 0.500231643963652 0 1.64028790550219e-10 hm5C_site_52367 DeepMRMD:0;iRNA_m5C:1.64028790550219e-10 52368 chr11 64939756 64939756 1 + C A GBM 64939752 + 64939732 64939772 41 GTGCTGGTCTACTTCCAGCGCGCCCACCTGAAGCTCAGCGA GTGCTGGTCTACTTCCAGCGCGCCAACCTGAAGCTCAGCGA < 41bp 0.486738231658129 0.859957022714065 0.022704035 0.05607733 prediction 0.719914045428129 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64939752 chr11:64939756 nonsynonymous SNV 0.439 0 25 hm5C_associated_SNPs_99223 0 0 0 0 2 nucleolus 0.500231643921598 0.500231633018305 0 0 hm5C_site_52368 DeepMRMD:0;iRNA_m5C:0 52369 chr17 61611394 61611394 1 + C A LUSC 61611390 + 61611370 61611410 41 GTCATCTACACGGCTGTCTTCACGCCCTACTCAGCCGCCTT GTCATCTACACGGCTGTCTTCACGACCTACTCAGCCGCCTT < 41bp 0.499829784281573 0.85981209042432 0.36253643 0.28858855 prediction 0.719624180848641 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61611390 chr17:61611394 nonsynonymous SNV 0.887 5 25 hm5C_associated_SNPs_99224 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_52369 DeepMRMD:0;iRNA_m5C:0 Urate levels in lean individuals 52370 chrX 149013341 149013341 1 + C A LUSC 149013337 + 149013317 149013357 41 GAAGAGGAGGGGCCAAGCACCTCCCCGGACCCAGCTCACCT GAAGAGGAGGGGCCAAGCACCTCCACGGACCCAGCTCACCT < 41bp 0.494904033172537 0.859733085140928 0.6646361 0.950985 prediction 0.719466170281856 Functional Gain - MAGEA8 ENSG00000156009 CDS Human protein_coding chrX:149013337 chrX:149013341 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99225 0 0 0 0 0 exosome 0.500231643921031 0.500231643921177 0.5726978 2.90656387846866e-13 hm5C_site_52370 DeepMRMD:0.5726978;iRNA_m5C:2.90656387846866e-13 52371 chr17 30625187 30625187 1 + C A rs148089007 30625183 + 30625163 30625203 41 CTGGAGATGGTGCATGGAGCCACCCGAATTGGGCTTGTCTA CTGGAGATGGTGCATGGAGCCACCAGAATTGGGCTTGTCTA < 41bp 0.490506688803499 0.859555584358353 0.070017815 0.13776138 prediction 0.719111168716707 Functional Gain - RHBDL3 ENSG00000141314 CDS Human protein_coding chr17:30625183 chr17:30625187 synonymous SNV . 0 25 hm5C_associated_SNPs_99226 0 0 0 0 2 cytosol 0.500231643920902 0.500231643831957 0 0 hm5C_site_52371 DeepMRMD:0;iRNA_m5C:0 52372 chr9 135374887 135374887 1 + C A LUAD 135374883 + 135374863 135374903 41 ACTGCCCGGGAGAACTTGCTCTACCGTCAGCTCAATGACAT ACTGCCCGGGAGAACTTGCTCTACAGTCAGCTCAATGACAT < 41bp 0.497997146668451 0.859516617544889 0.096437365 0.31024146 prediction 0.719033235089777 Functional Gain - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135374883 chr9:135374887 nonsynonymous SNV 0.048 3 25 hm5C_associated_SNPs_99227 0 0 0 0 0 nucleus 0.500231650073153 0.50023164820677 0 0 hm5C_site_52372 DeepMRMD:0;iRNA_m5C:0 52373 chr17 43171121 43171121 1 + C A UCEC 43171117 + 43171097 43171137 41 AATATCCGCCAGGAGCCCTACACCCTGCCCCAGGGCTTCAC AATATCCGCCAGGAGCCCTACACCATGCCCCAGGGCTTCAC < 41bp 0.469825271039437 0.859456370721735 0.050466627 0.066907555 prediction 0.718912741443471 Functional Gain - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43171117 chr17:43171121 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99228 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 6.66133814775094e-16 hm5C_site_52373 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 52374 chr4 81967462 81967462 1 + C A UCEC 81967458 + 81967438 81967478 41 AGCGCTCTACTGGGGTCTTGCTGCCTCTGCAGAACAACGAG AGCGCTCTACTGGGGTCTTGCTGCATCTGCAGAACAACGAG < 41bp 0.505516211193527 0.86493750586209 0.40280247 0.8266525 prediction 0.718842589337126 Functional Gain - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81967458 chr4:81967462 nonsynonymous SNV 0.974 4 25 hm5C_associated_SNPs_99229 0 0 0 0 0 Nucleus 0.500231643723778 0.500246287869985 0.653305 2.92882924137761e-05 hm5C_site_52374 DeepMRMD:0.653305;iRNA_m5C:2.92882924137761e-05 52375 chr17 7983170 7983170 1 + G T LUSC 7983174 - 7983154 7983194 41 CCCGGCCTGATCCGCCGCTGCACGCGGATCCCAGACAAGTT CCCGGCCTGATCCGCCGCTGCACGAGGATCCCAGACAAGTT < 41bp 0.494570428859879 0.859390528690551 0.33274412 0.54315805 prediction 0.718781057381101 Functional Gain - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7983174 chr17:7983170 synonymous SNV . 0 25 hm5C_associated_SNPs_99230 0 0 0 0 1 exosome 0.500231665949692 0.500231642794056 0.0863160999999999 0 hm5C_site_52375 DeepMRMD:0.0863160999999999;iRNA_m5C:0 52376 chrX 13607713 13607713 1 + C A LUAD 13607709 + 13607689 13607729 41 GGTTGTTAGCATCGGCACGTCAGCCTGGGGTCTGTCACTAT GGTTGTTAGCATCGGCACGTCAGCATGGGGTCTGTCACTAT < 41bp 0.505480594906634 0.864856746338731 0.14988545 0.30463523 prediction 0.718752302864194 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607709 chrX:13607713 nonsynonymous SNV 0.970 2 25 hm5C_associated_SNPs_99231 0 0 0 0 3 exosome 0.500231643988264 0.50023164120868 0 0 hm5C_site_52376 DeepMRMD:0;iRNA_m5C:0 52377 chr12 6632078 6632078 1 + C A GBM 6632074 + 6632054 6632094 41 TGTTTGGGGTGCGCCGTATGCTGCCTCTCATCTGGTCTAAG TGTTTGGGGTGCGCCGTATGCTGCATCTCATCTGGTCTAAG < 41bp 0.486579085918287 0.859155276601548 0.35221893 0.45147935 prediction 0.718310553203096 Functional Gain - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6632074 chr12:6632078 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99232 0 0 1 0 2 Nucleus 0.500231836968661 0.50023164394463 0 0 hm5C_site_52377 DeepMRMD:0;iRNA_m5C:0 52378 chr1 12919054 12919054 1 + C A LUAD 12919050 + 12919030 12919070 41 GTGCAGGCCTGGCCTTTCACCTGCCTCCCTCTGGTATCGCT GTGCAGGCCTGGCCTTTCACCTGCATCCCTCTGGTATCGCT < 41bp 0.498810890927462 0.859155052087773 0.18166536 0.22648698 prediction 0.718310104175546 Functional Gain - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12919050 chr1:12919054 nonsynonymous SNV 0.004 4 25 hm5C_associated_SNPs_99233 0 0 0 0 1 unknown 0.500231643416856 0.500231643921091 0 1.00847064032905e-09 hm5C_site_52378 DeepMRMD:0;iRNA_m5C:1.00847064032905e-09 52379 chr1 45268724 45268724 1 + C A rs17880471 45268720 + 45268700 45268740 41 GTTCACTACACGCTGCCTGCCAGCCTCTCACTGCCTGCCCG GTTCACTACACGCTGCCTGCCAGCATCTCACTGCCTGCCCG < 41bp 0.499782027606826 0.858662571739958 0.08532131 0.18132868 prediction 0.717325143479915 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268720 chr1:45268724 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_99234 0 0 0 4 1 Cytosol 0.500231643924841 0.500231648833271 0 9.81686021361838e-09 hm5C_site_52379 DeepMRMD:0;iRNA_m5C:9.81686021361838e-09 52380 chr10 68687855 68687855 1 + C A UCEC 68687851 + 68687831 68687871 41 GGCCGAAGCATGAGAGCAAACCCCCTTTGCCCCCGACGGTG GGCCGAAGCATGAGAGCAAACCCCATTTGCCCCCGACGGTG < 41bp 0.498502545166708 0.858550252166936 0.2828526 0.22315732 prediction 0.717100504333873 Functional Gain - LRRTM3 ENSG00000198739 CDS Human protein_coding chr10:68687851 chr10:68687855 nonsynonymous SNV 0.925 3 25 hm5C_associated_SNPs_99235 0 0 0 0 0 unknown 0.500231643921092 0.500231643921097 0 9.32587340685131e-15 hm5C_site_52380 DeepMRMD:0;iRNA_m5C:9.32587340685131e-15 52381 chrX 48547293 48547293 1 + C A LUAD 48547289 + 48547269 48547309 41 ACCCCCTGGAGCTGGTGGGCCACCCATGCCACCACCACCGC ACCCCCTGGAGCTGGTGGGCCACCAATGCCACCACCACCGC < 41bp 0.504745594803282 0.86301395608475 0.22360262 0.5322331 prediction 0.716536722562936 Functional Gain - WAS ENSG00000015285 CDS Human protein_coding chrX:48547289 chrX:48547293 synonymous SNV . 0 25 hm5C_associated_SNPs_99236 0 0 0 0 0 Endoplasmic reticulum 0.500231643921157 0.500231643929532 0.0644662 1.67501568171247e-11 hm5C_site_52381 DeepMRMD:0.0644662;iRNA_m5C:1.67501568171247e-11 52382 chr19 50910271 50910271 1 + C A UCEC 50910267 + 50910247 50910287 41 ACGACCAGACCCGCCGCCGCCTGGCTGTGTACTGCCTGAAG ACGACCAGACCCGCCGCCGCCTGGATGTGTACTGCCTGAAG < 41bp 0.495207468600586 0.85790749775753 0.120147854 0.5528254 prediction 0.71581499551506 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50910267 chr19:50910271 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_99237 0 0 1 0 1 Nucleus 0.500231643923146 0.500231643468793 0.1056508 0 hm5C_site_52382 DeepMRMD:0.1056508;iRNA_m5C:0 52383 chr1 46871374 46871374 1 + C A rs72890799 46871370 + 46871350 46871390 41 CCTCATCGGGTCTGGAGGCTCCCCCCTGGGCTTAGGCACTG CCTCATCGGGTCTGGAGGCTCCCCACTGGGCTTAGGCACTG < 41bp 0.495925678855666 0.857888255864699 0.3777182 0.08317882 prediction 0.715776511729397 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871370 chr1:46871374 synonymous SNV . 0 25 hm5C_associated_SNPs_99238 0 0 0 0 1 Ribosome 0.500231643921016 0.500231643920853 0 0 hm5C_site_52383 DeepMRMD:0;iRNA_m5C:0 52384 chr17 38133250 38133250 1 + C A UCEC 38133246 + 38133226 38133266 41 ATATGTGGGACCCAGACACCCTCCCTCGCCTCTGTGCTCTT ATATGTGGGACCCAGACACCCTCCATCGCCTCTGTGCTCTT < 41bp 0.479011647837262 0.857878204389196 0.12050137 0.9528662 prediction 0.715756408778393 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38133246 chr17:38133250 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_99239 0 0 0 0 0 Nucleus 0.50023164392099 0.500231643921152 0.9057324 3.23963078585621e-13 hm5C_site_52384 DeepMRMD:0.9057324;iRNA_m5C:3.23963078585621e-13 52385 chr8 22136961 22136961 1 + C A COAD 22136957 + 22136937 22136977 41 CTATCCACCCATCCCAGTGCCAGGCTGTACGGATGCCAGGC CTATCCACCCATCCCAGTGCCAGGATGTACGGATGCCAGGC < 41bp 0.501803209391871 0.859612272323976 0.4630534 0.8231364 prediction 0.715618125864211 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22136957 chr8:22136961 nonsynonymous SNV 0.769 0 25 hm5C_associated_SNPs_99240 0 0 0 0 0 nucleus 0.500231643921079 0.500231643921089 0.6462728 2.06501482580279e-14 hm5C_site_52385 DeepMRMD:0.6462728;iRNA_m5C:2.06501482580279e-14 52386 chrX 64722737 64722737 1 + C A UCEC 64722733 + 64722713 64722753 41 GCAACCCCGTGAGGCAAAGACGACCTCCCCTGTGCCGGGAA GCAACCCCGTGAGGCAAAGACGACATCCCCTGTGCCGGGAA < 41bp 0.4979602421065 0.857793151371574 0.17966357 0.14611992 prediction 0.715586302743147 Functional Gain - ZC3H12B ENSG00000102053 CDS Human protein_coding chrX:64722733 chrX:64722737 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_99241 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643919016 0 0 hm5C_site_52386 DeepMRMD:0;iRNA_m5C:0 52387 chr19 49899075 49899075 1 + C A rs559172057 49899071 + 49899051 49899091 41 GCCTTCCAGGGAGCCCTGACCTCCCGGCAACTGCCATCTGG GCCTTCCAGGGAGCCCTGACCTCCAGGCAACTGCCATCTGG < 41bp 0.468570024778965 0.857735170968208 0.2395294 0.91310465 prediction 0.715470341936416 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49899071 chr19:49899075 synonymous SNV . 0 25 hm5C_associated_SNPs_99242 0 0 0 0 2 nucleolus 0.500231643921258 0.500231643921129 0.8262093 0 hm5C_site_52387 DeepMRMD:0.8262093;iRNA_m5C:0 52388 chr20 44640353 44640353 1 + C A UCEC 44640349 + 44640329 44640369 41 TGCGCCACCACCGCCAACTACGACCGGGACAAGCTCTTCGG TGCGCCACCACCGCCAACTACGACAGGGACAAGCTCTTCGG < 41bp 0.495621406161621 0.85767653178235 0.28437537 0.5949905 prediction 0.715353063564699 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640349 chr20:44640353 synonymous SNV . 0 25 hm5C_associated_SNPs_99243 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231642217151 0.189981 0 hm5C_site_52388 DeepMRMD:0.189981;iRNA_m5C:0 52389 chrX 153678083 153678083 1 + C A LUSC 153678079 + 153678059 153678099 41 CAAGGAGGACTTGATCATCCCTCACGTGAGTCCCTTCAGCC CAAGGAGGACTTGATCATCCCTCAAGTGAGTCCCTTCAGCC < 41bp 0.503562389630977 0.860815299936994 0.10458323 0.21925846 prediction 0.714505820612034 Functional Gain - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678079 chrX:153678083 nonsynonymous SNV 0.282 1 25 hm5C_associated_SNPs_99244 0 0 1 0 2 Ribosome 0.500231643921284 0.500231650477766 0 1.31129638258898e-08 hm5C_site_52389 DeepMRMD:0;iRNA_m5C:1.31129638258898e-08 52390 chr16 31141854 31141854 1 + C A LIHC 31141850 + 31141830 31141870 41 TCTGACCTGGGCAAGCTCAGCTACCGCAGCTACTGGTCCTG TCTGACCTGGGCAAGCTCAGCTACAGCAGCTACTGGTCCTG < 41bp 0.484753593026648 0.857206888172207 0.22376728 0.8048426 prediction 0.714413776344414 Functional Gain - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31141850 chr16:31141854 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99245 0 0 1 0 2 Ribosome 0.500231643890129 0.500229138174033 0.6096852 0 hm5C_site_52390 DeepMRMD:0.6096852;iRNA_m5C:0 52391 chr1 186934631 186934631 1 + C A UCEC 186934627 + 186934607 186934647 41 ACAGTGGGCTCACATTTAACCTGCCGTATCCCTTGATACTG ACAGTGGGCTCACATTTAACCTGCAGTATCCCTTGATACTG < 41bp 0.497017775001747 0.857133806434516 0.39834514 0.3017531 prediction 0.714267612869031 Functional Gain - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186934627 chr1:186934631 nonsynonymous SNV 0.978 4 25 hm5C_associated_SNPs_99246 0 0 0 0 2 Nucleus 0.50023164191296 0.50023162988797 0 0 hm5C_site_52391 DeepMRMD:0;iRNA_m5C:0 52392 chr12 123892234 123892234 1 + C A OV 123892230 + 123892210 123892250 41 GCAAGGCTTCCATTGAAGCCCACCCGTGGCTGAAGCATTAA GCAAGGCTTCCATTGAAGCCCACCAGTGGCTGAAGCATTAA < 41bp 0.494193070752607 0.857051096362205 0.07958573 0.3401677 prediction 0.714102192724409 Functional Gain - KMT5A ENSG00000183955 CDS Human protein_coding chr12:123892230 chr12:123892234 nonsynonymous SNV 0.966 5 25 hm5C_associated_SNPs_99247 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921586 0 9.87876447311464e-13 hm5C_site_52392 DeepMRMD:0;iRNA_m5C:9.87876447311464e-13 52393 chr16 24372952 24372952 1 + C A LGG 24372948 + 24372928 24372968 41 TCCGGAGGCGGTCAAGTTCTCGCTCCACCGAGCCCAGATCC TCCGGAGGCGGTCAAGTTCTCGCTACACCGAGCCCAGATCC < 41bp 0.498340305313401 0.857003637950362 0.46007904 0.3181389 prediction 0.714007275900723 Functional Gain - CACNG3 ENSG00000006116 CDS Human protein_coding chr16:24372948 chr16:24372952 nonsynonymous SNV 0.971 4 25 hm5C_associated_SNPs_99248 0 0 0 0 0 nucleus 0.500231643922172 0.500231643921092 0 0 hm5C_site_52393 DeepMRMD:0;iRNA_m5C:0 52394 chr9 102590927 102590927 1 + C A rs140220595 102590923 + 102590903 102590943 41 CAAGCCCTCGCCGCCGCATCCCCCCGCGCCCAGCCCGGCCG CAAGCCCTCGCCGCCGCATCCCCCAGCGCCCAGCCCGGCCG < 41bp 0.505013023296143 0.861844263476732 0.07535562 0.05855304 prediction 0.713662480361177 Functional Gain - NR4A3 ENSG00000119508 CDS Human protein_coding chr9:102590923 chr9:102590927 synonymous SNV . 0 25 hm5C_associated_SNPs_99249 0 0 0 0 0 Cytosol 0.500231643905038 0.500231579014464 0 0 hm5C_site_52394 DeepMRMD:0;iRNA_m5C:0 52395 chr19 41094595 41094595 1 + C A MESO 41094591 + 41094571 41094611 41 CGCTTCCGCGGCATGATTTCCACCCAGCCCGGCTCCACCCC CGCTTCCGCGGCATGATTTCCACCAAGCCCGGCTCCACCCC < 41bp 0.524815115009158 0.881593910243754 0.012596607 0.036183894 prediction 0.713557590469193 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41094591 chr19:41094595 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_99250 0 0 1 0 2 Ribosome 0.500231643920773 0.500231644323819 0 8.06090305616181e-10 hm5C_site_52395 DeepMRMD:0;iRNA_m5C:8.06090305616181e-10 52396 chr2 26502071 26502071 1 + C A UCEC 26502067 + 26502047 26502087 41 CTCTGCAGACCGACTGGCCGCTGCCTTTGCTGTTTCTCGGC CTCTGCAGACCGACTGGCCGCTGCATTTGCTGTTTCTCGGC < 41bp 0.519263219063867 0.87594443627508 0.09597275 0.28898704 prediction 0.713362434422426 Functional Gain - HADHB ENSG00000138029 CDS Human protein_coding chr2:26502067 chr2:26502071 synonymous SNV . 0 25 hm5C_associated_SNPs_99251 0 0 1 0 1 Ribosome 0.499664965735959 0.500234793577647 0 0.000469587155293105 hm5C_site_52396 DeepMRMD:0;iRNA_m5C:0.000469587155293105 52397 chr3 113342545 113342545 1 + C A LUSC 113342541 + 113342521 113342561 41 ACCGCTGTGATGTGGGCTGCCGCCCTATATTTTTTCTTCCA ACCGCTGTGATGTGGGCTGCCGCCATATATTTTTTCTTCCA < 41bp 0.487722833433488 0.85649382178124 0.036833674 0.246963 prediction 0.71298764356248 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113342541 chr3:113342545 nonsynonymous SNV 0.686 2 25 hm5C_associated_SNPs_99252 0 0 0 0 2 exosome 0.500231643937045 0.500231643943091 0 1.20923271396123e-11 hm5C_site_52397 DeepMRMD:0;iRNA_m5C:1.20923271396123e-11 52398 chrX 150349551 150349551 1 + C A UCEC 150349547 + 150349527 150349567 41 CCTTCAGTGCTGCCACCAGCCACCCTAAACCCACCACTGGC CCTTCAGTGCTGCCACCAGCCACCATAAACCCACCACTGGC < 41bp 0.499670936128451 0.856281322697886 0.06671092 0.05192879 prediction 0.712562645395772 Functional Gain - GPR50 ENSG00000102195 CDS Human protein_coding chrX:150349547 chrX:150349551 nonsynonymous SNV 0.115 0 25 hm5C_associated_SNPs_99253 0 0 0 0 0 exosome 0.500233476719091 0.500231643963682 0 0 hm5C_site_52398 DeepMRMD:0;iRNA_m5C:0 52399 chr22 29692342 29692342 1 + C A THCA 29692338 + 29692318 29692358 41 AGACCCACCCACTGCCAAGGCTGCCGTGGAATGGTTTGATG AGACCCACCCACTGCCAAGGCTGCAGTGGAATGGTTTGATG < 41bp 0.512426528762489 0.868681241869838 0.14245933 0.14424375 prediction 0.712509426214697 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29692338 chr22:29692342 synonymous SNV . 0 25 hm5C_associated_SNPs_99254 0 0 1 0 1 Cytosol 0.500231644199802 0.500231648176329 0 7.95305266088064e-09 hm5C_site_52399 DeepMRMD:0;iRNA_m5C:7.95305266088064e-09 52400 chr11 125476316 125476316 1 + C A STAD 125476312 + 125476292 125476332 41 GTGGCCTACTGTACTGTTTACTGCCTGGGCACTATACTTTC GTGGCCTACTGTACTGTTTACTGCATGGGCACTATACTTTC < 41bp 0.512800548147884 0.869043816427435 0.055101573 0.30244538 prediction 0.712486536559103 Functional Gain - STT3A ENSG00000134910 CDS Human protein_coding chr11:125476312 chr11:125476316 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99255 0 0 1 0 1 Endoplasmic reticulum 0.500231643919767 0.500231643919628 0 0 hm5C_site_52400 DeepMRMD:0;iRNA_m5C:0 52401 chr11 67352198 67352198 1 + C A SKCM 67352194 + 67352174 67352214 41 AAGTTCCAGGACGGAGACCTCACCCTGTACCAGTCCAATAC AAGTTCCAGGACGGAGACCTCACCATGTACCAGTCCAATAC < 41bp 0.514298350718963 0.870489636904943 0.16740692 0.24128473 prediction 0.71238257237196 Functional Gain - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67352194 chr11:67352198 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99256 0 0 1 0 2 Cytosol 0.500231643863014 0.500231643921638 0 1.17248433184614e-10 hm5C_site_52401 DeepMRMD:0;iRNA_m5C:1.17248433184614e-10 52402 chr19 3739035 3739035 1 + C A UCEC 3739031 + 3739011 3739051 41 GTGCTGGACACGCTGCACCCCGGCCCCGGGCAGAGCCACGC GTGCTGGACACGCTGCACCCCGGCACCGGGCAGAGCCACGC < 41bp 0.495101306184603 0.856031814740146 0.21278268 0.19345388 prediction 0.712063629480291 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3739031 chr19:3739035 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_99257 0 0 0 0 1 Ribosome 0.500231643923131 0.500231643919288 0 0 hm5C_site_52402 DeepMRMD:0;iRNA_m5C:0 52403 chr2 238419308 238419308 1 + C A UCEC 238419304 + 238419284 238419324 41 AACGAGACCCACTGCGCCCGCTGCCTGCAGCCCTACCAGCT AACGAGACCCACTGCGCCCGCTGCATGCAGCCCTACCAGCT < 41bp 0.483200301355891 0.856002479926345 0.08328667 0.22402674 prediction 0.712004959852691 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238419304 chr2:238419308 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_99258 0 0 0 0 1 Nucleus 0.500231643921092 0.500089447666751 0 0 hm5C_site_52403 DeepMRMD:0;iRNA_m5C:0 52404 chr12 130647923 130647923 1 + C A STAD 130647919 + 130647899 130647939 41 CCCAACAAGAACGACCCCAACTACCTGTGCATGGAGGCGCC CCCAACAAGAACGACCCCAACTACATGTGCATGGAGGCGCC < 41bp 0.492270880848313 0.855995028779732 0.05834648 0.60075223 prediction 0.711990057559465 Functional Gain - FZD10 ENSG00000111432 CDS Human protein_coding chr12:130647919 chr12:130647923 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_99259 0 0 0 0 0 exosome 0.500231597961427 0.500231643908609 0.20150446 9.18943625638491e-08 hm5C_site_52404 DeepMRMD:0.20150446;iRNA_m5C:9.18943625638491e-08 52405 chr6 83075384 83075384 1 + C A GBM 83075380 + 83075360 83075400 41 GATGTGCTGGCCCAACTGCCCAGCCTCAGGCACCTGGACTT GATGTGCTGGCCCAACTGCCCAGCATCAGGCACCTGGACTT < 41bp 0.500311283381879 0.856242972224968 0.10602021 0.14059797 prediction 0.711863377686177 Functional Gain - TPBG ENSG00000146242 CDS Human protein_coding chr6:83075380 chr6:83075384 nonsynonymous SNV 0.068 4 25 hm5C_associated_SNPs_99260 0 0 0 0 0 Ribosome 0.500231645429516 0.500237507028878 0 1.17231987235566e-05 hm5C_site_52405 DeepMRMD:0;iRNA_m5C:1.17231987235566e-05 52406 chrX 135572327 135572327 1 + C A OV 135572323 + 135572303 135572343 41 TTGTGAAGCCACTTGAGCGACAGCCCTCCAATGCCATCCTG TTGTGAAGCCACTTGAGCGACAGCACTCCAATGCCATCCTG < 41bp 0.503952823323954 0.859800759325891 0.02183035 0.03953865 prediction 0.711695872003874 Functional Gain - BRS3 ENSG00000102239 CDS Human protein_coding chrX:135572323 chrX:135572327 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_99261 0 0 0 0 1 unknown 0.500231644018592 0.500231643921093 0 0 hm5C_site_52406 DeepMRMD:0;iRNA_m5C:0 52407 chr6 106553089 106553089 1 + C A LUSC 106553085 + 106553065 106553105 41 GACCAAAGCCTCAAGAGCTCCAGCCCTCACAGCAGCCCTGG GACCAAAGCCTCAAGAGCTCCAGCACTCACAGCAGCCCTGG < 41bp 0.494917593849718 0.855837418231247 0.10163334 0.1101121 prediction 0.711674836462493 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106553085 chr6:106553089 nonsynonymous SNV 0.942 4 25 hm5C_associated_SNPs_99262 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_52407 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 52408 chr19 52327394 52327394 1 + C A LUAD 52327390 + 52327370 52327410 41 CTGTATTTGTGTCCTGCATCCAGCCTGGGCCCAGAACCATC CTGTATTTGTGTCCTGCATCCAGCATGGGCCCAGAACCATC < 41bp 0.500734190383598 0.856442210934169 0.19462734 0.15456578 prediction 0.711416041101143 Functional Gain - FPR3 ENSG00000187474 CDS Human protein_coding chr19:52327390 chr19:52327394 synonymous SNV . 0 25 hm5C_associated_SNPs_99263 0 0 0 0 0 cytosol 0.500231644775808 0.500231643982652 0 0 hm5C_site_52408 DeepMRMD:0;iRNA_m5C:0 52409 chr2 65480940 65480940 1 + C A OV 65480936 + 65480916 65480956 41 CAGTATATGAAGGCTTTTCTCTCCCTCATCTTACCAGGAGA CAGTATATGAAGGCTTTTCTCTCCATCATCTTACCAGGAGA < 41bp 0.488931371662808 0.855539819532598 0.77485895 0.9616853 prediction 0.711079639065196 Functional Gain - ACTR2 ENSG00000138071 CDS Human protein_coding chr2:65480936 chr2:65480940 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99264 0 0 0 0 2 Ribosome 0.500231643922838 0.500231643870514 0.3736527 0 hm5C_site_52409 DeepMRMD:0.3736527;iRNA_m5C:0 52410 chr6 49518970 49518970 1 + C A rs182552480 49518966 + 49518946 49518986 41 GCCGCGGGACGCAGCAGACCCACCCAAATACGTGCTTGTGC GCCGCGGGACGCAGCAGACCCACCAAAATACGTGCTTGTGC < 41bp 0.509268012098913 0.864790508747217 0.06894216 0.45152953 prediction 0.711044993296607 Functional Gain - C6orf141 ENSG00000197261 CDS Human protein_coding chr6:49518966 chr6:49518970 synonymous SNV . 0 25 hm5C_associated_SNPs_99265 0 0 0 0 0 exosome 0.500231643897555 0.500231643929529 0 6.39475139507795e-11 hm5C_site_52410 DeepMRMD:0;iRNA_m5C:6.39475139507795e-11 52411 chr2 234851360 234851360 1 + C A STAD 234851356 + 234851336 234851376 41 GCAGCTTGGGGCATGGTCTCCAACCGGGACACCCTCATCAG GCAGCTTGGGGCATGGTCTCCAACAGGGACACCCTCATCAG < 41bp 0.489807674781529 0.855483357547385 0.37056637 0.30761752 prediction 0.71096671509477 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234851356 chr2:234851360 synonymous SNV . 0 25 hm5C_associated_SNPs_99266 0 0 0 0 1 exosome 0.50023164392378 0.500231643917726 0 0 hm5C_site_52411 DeepMRMD:0;iRNA_m5C:0 52412 chr17 58506771 58506771 1 + C A LUAD 58506767 + 58506747 58506787 41 CCGGAGAGGTCCTTGCTGGCCGACCGGGAAGACAGTCTGCC CCGGAGAGGTCCTTGCTGGCCGACAGGGAAGACAGTCTGCC < 41bp 0.503164942997115 0.858523981567209 0.2837518 0.289266 prediction 0.710718077140188 Functional Gain - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58506767 chr17:58506771 synonymous SNV . 0 25 hm5C_associated_SNPs_99267 0 0 0 0 1 exosome 0.500231643919391 0.500231643921018 0 3.25406368517633e-12 hm5C_site_52412 DeepMRMD:0;iRNA_m5C:3.25406368517633e-12 52413 chr3 128973548 128973548 1 + C A UCEC 128973544 + 128973524 128973564 41 ATGACTGGGAAAGAAGACAACTACCGGGGCCCGGCCGTGCG ATGACTGGGAAAGAAGACAACTACAGGGGCCCGGCCGTGCG < 41bp 0.472957717925774 0.85532656279227 0.022619575 0.7802942 prediction 0.71065312558454 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973544 chr3:128973548 synonymous SNV . 0 25 hm5C_associated_SNPs_99268 0 0 1 0 2 Nucleus 0.500231643921103 0.500231643921289 0.5605884 3.73479025483903e-13 hm5C_site_52413 DeepMRMD:0.5605884;iRNA_m5C:3.73479025483903e-13 52414 chr1 15789268 15789268 1 + C A LGG 15789264 + 15789244 15789284 41 CGCGTGGGGCTGGGCCGGCACAACCTCTACGTTGCGGAGTC CGCGTGGGGCTGGGCCGGCACAACATCTACGTTGCGGAGTC < 41bp 0.489331947482185 0.855234304731525 0.04637155 0.12386307 prediction 0.710468609463049 Functional Gain - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15789264 chr1:15789268 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_99269 0 0 0 0 1 unknown 0.500231643921092 0.500231643921147 0 1.08357767203415e-13 hm5C_site_52414 DeepMRMD:0;iRNA_m5C:1.08357767203415e-13 52415 chr9 135919225 135919225 1 + C A rs150056568 135919221 + 135919201 135919241 41 CCCGAGAAGGAGGCCTTTTTCCACCAGGAGCTGCCGCTCTA CCCGAGAAGGAGGCCTTTTTCCACAAGGAGCTGCCGCTCTA < 41bp 0.480046974348366 0.855181245041019 0.1984326 0.31640247 prediction 0.710362490082039 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919221 chr9:135919225 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_99270 0 0 1 0 1 Ribosome 0.500231643921093 0.500231643956751 0 7.13169523436363e-11 hm5C_site_52415 DeepMRMD:0;iRNA_m5C:7.13169523436363e-11 52416 chr8 38066683 38066683 1 + C A UCEC 38066679 + 38066659 38066699 41 TTATCCCTGGCCTTCATCAGCGCCCTCAGCACCACCCGGCA TTATCCCTGGCCTTCATCAGCGCCATCAGCACCACCCGGCA < 41bp 0.477622295107766 0.855135327319987 0.25377157 0.25333184 prediction 0.710270654639974 Functional Gain - BAG4 ENSG00000156735 CDS Human protein_coding chr8:38066679 chr8:38066683 synonymous SNV . 0 25 hm5C_associated_SNPs_99271 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52416 DeepMRMD:0;iRNA_m5C:0 52417 chr16 88780174 88780174 1 + C A COAD 88780170 + 88780150 88780190 41 CGTTCCTTCTGTCTTCACACCAGCCGTCGACACCAAGGTGG CGTTCCTTCTGTCTTCACACCAGCAGTCGACACCAAGGTGG < 41bp 0.496660710905461 0.855042696893158 0.081940025 0.09355843 prediction 0.710085393786316 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780170 chr16:88780174 synonymous SNV . 0 25 hm5C_associated_SNPs_99272 0 0 1 0 1 Cytosol 0.500248626673734 0.50023164392618 0 0 hm5C_site_52417 DeepMRMD:0;iRNA_m5C:0 52418 chr1 230903376 230903376 1 + C A HNSC 230903372 + 230903352 230903392 41 GGGGTGTGGCAGAGACCTTCCAAACTAAAGAGGCCCCCGAG GGGGTGTGGCAGAGACCTTCCAAAATAAAGAGGCCCCCGAG < 41bp 0.490765360298865 0.854776483311277 0.2753255 0.3766057 prediction 0.709552966622554 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230903372 chr1:230903376 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_99273 0 0 0 0 2 exosome 0.500231643918292 0.500231643921088 0 5.59174928582706e-12 hm5C_site_52418 DeepMRMD:0;iRNA_m5C:5.59174928582706e-12 52419 chrX 51075893 51075893 1 + C A UCEC 51075889 + 51075869 51075909 41 AAGCGGGCGGCGTGCCTGTGCTTCCGGAGCGAGCGCGAGGA AAGCGGGCGGCGTGCCTGTGCTTCAGGAGCGAGCGCGAGGA < 41bp 0.489165884822541 0.854688440407473 0.18278152 0.16145015 prediction 0.709376880814947 Functional Gain - NUDT10 ENSG00000122824 CDS Human protein_coding chrX:51075889 chrX:51075893 synonymous SNV . 0 25 hm5C_associated_SNPs_99274 0 0 0 0 0 exosome 0.500231643921092 0.500231643921003 0 0 hm5C_site_52419 DeepMRMD:0;iRNA_m5C:0 52420 chrX 107310331 107310331 1 + C A LUAD 107310327 + 107310307 107310347 41 AACAACCCCCCAGACTTTCTCGGCCAAAACCAAGGCATCCT AACAACCCCCCAGACTTTCTCGGCAAAAACCAAGGCATCCT < 41bp 0.483807664275416 0.854611246042487 0.87464976 0.8646945 prediction 0.709222492084974 Functional Gain - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107310327 chrX:107310331 nonsynonymous SNV 0.600 0 25 hm5C_associated_SNPs_99275 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_52420 DeepMRMD:0;iRNA_m5C:0 52421 chr13 25283596 25283596 1 + C A rs2289909 25283592 + 25283572 25283612 41 ATAAGGACAGGCTGGTGAACCAGCCGCTCGCTGTGTACTCA ATAAGGACAGGCTGGTGAACCAGCAGCTCGCTGTGTACTCA < 41bp 0.485958551754546 0.854573624858502 0.20439222 0.21995941 prediction 0.709147249717003 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25283592 chr13:25283596 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_99276 0 0 0 0 2 Nucleus 0.500231638607327 0.500411248186416 0 0.000359219158178714 hm5C_site_52421 DeepMRMD:0;iRNA_m5C:0.000359219158178714 52422 chr1 151239760 151239760 1 + C A UCEC 151239756 + 151239736 151239776 41 GCCATTCGAAATGCTATGGGCTCCCTGGCCTCCCAGGCCAC GCCATTCGAAATGCTATGGGCTCCATGGCCTCCCAGGCCAC < 41bp 0.478650743441279 0.854505101381649 0.035488605 0.8536605 prediction 0.709010202763298 Functional Gain - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151239756 chr1:151239760 nonsynonymous SNV 0.990 3 25 hm5C_associated_SNPs_99277 0 0 1 0 0 Ribosome 0.500231643921092 0.50023414819225 0.707321 5.00854231533232e-06 hm5C_site_52422 DeepMRMD:0.707321;iRNA_m5C:5.00854231533232e-06 52423 chr10 43606745 43606745 1 + C A rs151148041 43606741 + 43606721 43606761 41 TCCTCTGGTGCCAACTGCAGCACGCTAGGGGTGGTCACCTC TCCTCTGGTGCCAACTGCAGCACGATAGGGGTGGTCACCTC < 41bp 0.480850828747641 0.854484775342732 0.35338295 0.4062781 prediction 0.708969550685464 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43606741 chr10:43606745 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_99278 1 0 0 0 1 Cytosol 0.500231643931268 0.500231643919711 0 0 hm5C_site_52423 DeepMRMD:0;iRNA_m5C:0 Multiple endocrine neoplasia, type 2 Multiple endocrine neoplasia, type 2 52424 chr3 119219634 119219634 1 + C A GBM 119219630 + 119219610 119219650 41 GCTGGGTGTATGGGGGAATACCAGCTTTTATTCATGCTAAA GCTGGGTGTATGGGGGAATACCAGATTTTATTCATGCTAAA < 41bp 0.500952915768669 0.855424727724955 0.33309004 0.5054564 prediction 0.708943623912571 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119219630 chr3:119219634 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99279 0 0 1 4 2 Ribosome 0.500231643921092 0.500231643921092 0.0109128000000001 0 hm5C_site_52424 DeepMRMD:0.0109128000000001;iRNA_m5C:0 52425 chr7 5269284 5269284 1 + C A UCEC 5269280 + 5269260 5269300 41 GACCAATGAGATCTTGGACTCTGCCTCTCACGACTGCCCCT GACCAATGAGATCTTGGACTCTGCATCTCACGACTGCCCCT < 41bp 0.510435346281198 0.864757668450207 0.06968632 0.21299633 prediction 0.708644644338018 Functional Gain - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5269280 chr7:5269284 synonymous SNV . 0 25 hm5C_associated_SNPs_99280 0 0 1 0 3 Cytosol 0.500231643921092 0.500231513052498 0 0 hm5C_site_52425 DeepMRMD:0;iRNA_m5C:0 52426 chr1 75622664 75622664 1 + C A LUAD 75622660 + 75622640 75622680 41 CACCCCAGTCACAGCAGTCCCACCCTCCAGGCTGTCTCCAC CACCCCAGTCACAGCAGTCCCACCATCCAGGCTGTCTCCAC < 41bp 0.473836579116171 0.854295245369862 0.03861901 0.13847065 prediction 0.708590490739724 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75622660 chr1:75622664 synonymous SNV . 0 25 hm5C_associated_SNPs_99281 0 0 0 0 2 exosome 0.500231643921075 0.500231671212951 0 5.45837517407222e-08 hm5C_site_52426 DeepMRMD:0;iRNA_m5C:5.45837517407222e-08 52427 chr9 139874454 139874454 1 + C A COAD 139874450 + 139874430 139874470 41 GAGACCGACTACGACCAGTACGCGCTGCTGTACAGCCAGGG GAGACCGACTACGACCAGTACGCGATGCTGTACAGCCAGGG < 41bp 0.50418798372935 0.858451333737864 0.2782734 0.50426084 prediction 0.708526700017028 Functional Gain - PTGDS ENSG00000107317 CDS Human protein_coding chr9:139874450 chr9:139874454 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_99282 0 0 0 0 2 exosome 0.500231643927774 0.500231643857736 0.00852168000000009 0 hm5C_site_52427 DeepMRMD:0.00852168000000009;iRNA_m5C:0 52428 chr19 41727860 41727860 1 + C A STAD 41727856 + 41727836 41727876 41 CCCCCTTCAACCTGAGCTGCCAAGCTCAGGGACCCCCAGAG CCCCCTTCAACCTGAGCTGCCAAGATCAGGGACCCCCAGAG < 41bp 0.500298773353658 0.85443005007911 0.2982909 0.23035356 prediction 0.708262553450903 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41727856 chr19:41727860 nonsynonymous SNV 0.983 4 25 hm5C_associated_SNPs_99283 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_52428 DeepMRMD:0;iRNA_m5C:0 52429 chr3 138668431 138668431 1 + C A LUAD 138668427 + 138668407 138668447 41 TGGGAAGGGCTGGAATCGGTCTCCCCAAGATGTGCCTTCAC TGGGAAGGGCTGGAATCGGTCTCCACAAGATGTGCCTTCAC < 41bp 0.478955817019815 0.854121634176814 0.2118868 0.93776405 prediction 0.708243268353629 Functional Gain - FOXL2NB ENSG00000206262 CDS Human protein_coding chr3:138668427 chr3:138668431 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_99284 0 0 0 0 2 Nucleus 0.500231643412652 0.500231505785943 0.8755281 0 hm5C_site_52429 DeepMRMD:0.8755281;iRNA_m5C:0 52430 chr19 30935931 30935931 1 + C A LUAD 30935927 + 30935907 30935947 41 GTCCCGGAGGGGGACAAGCACTCCCTCCTGGGATGCCTCAA GTCCCGGAGGGGGACAAGCACTCCATCCTGGGATGCCTCAA < 41bp 0.530821331977584 0.884924627775962 0.25525334 0.9408933 prediction 0.708206591596755 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935927 chr19:30935931 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99285 0 0 1 0 0 exosome 0.500231643741342 0.50023164539041 0.8817866 3.29813421018343e-09 hm5C_site_52430 DeepMRMD:0.8817866;iRNA_m5C:3.29813421018343e-09 52431 chr21 43979141 43979141 1 + C A STAD 43979137 + 43979117 43979157 41 ACCCGAACCACGTCGTCATTCTCCCCGGGGACGGTGGGAGT ACCCGAACCACGTCGTCATTCTCCACGGGGACGGTGGGAGT < 41bp 0.464182467565147 0.854100859963802 0.17242593 0.9166002 prediction 0.708201719927605 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979137 chr21:43979141 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_99286 0 0 1 0 2 Nucleus 0.50023750186277 0.500231653934932 0.8332004 0 hm5C_site_52431 DeepMRMD:0.8332004;iRNA_m5C:0 52432 chr11 67187016 67187016 1 + C A LUSC 67187012 + 67186992 67187032 41 GGCGGCAGGCATGGCGTCTGCACCCGCGGGCAGAGCTGGGT GGCGGCAGGCATGGCGTCTGCACCAGCGGGCAGAGCTGGGT < 41bp 0.488561601564249 0.853999510705844 0.29636252 0.7011071 prediction 0.707999021411688 Functional Gain - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67187012 chr11:67187016 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99287 0 0 0 0 1 exosome 0.500231643921092 0.500231643921094 0.4022142 3.5527136788005e-15 hm5C_site_52432 DeepMRMD:0.4022142;iRNA_m5C:3.5527136788005e-15 52433 chr7 106508717 106508717 1 + C A rs138929870 106508713 + 106508693 106508733 41 CAGCCAGACCATTAAGGTCTCACCCGACGACACCCCCGGCG CAGCCAGACCATTAAGGTCTCACCAGACGACACCCCCGGCG < 41bp 0.520640333394196 0.874579369846419 0.029322892 0.100955546 prediction 0.707878072904446 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508713 chr7:106508717 synonymous SNV . 0 25 hm5C_associated_SNPs_99288 0 0 0 0 0 Cytosol 0.500231643916355 0.500231661050936 0 3.42691628407721e-08 hm5C_site_52433 DeepMRMD:0;iRNA_m5C:3.42691628407721e-08 52434 chr11 94861961 94861961 1 + C A OV 94861957 + 94861937 94861977 41 GCCATGGGCTTTGTCAAGCACACCCGGGACAGTGACATCAT GCCATGGGCTTTGTCAAGCACACCAGGGACAGTGACATCAT < 41bp 0.515691211986982 0.86962906201294 0.023475021 0.1031951 prediction 0.707875700051917 Functional Gain - ENDOD1 ENSG00000149218 CDS Human protein_coding chr11:94861957 chr11:94861961 synonymous SNV . 0 25 hm5C_associated_SNPs_99289 0 0 0 0 0 Ribosome 0.50023203325558 0.500374619842284 0 0.000285173173408815 hm5C_site_52434 DeepMRMD:0;iRNA_m5C:0.000285173173408815 52435 chr11 69462787 69462787 1 + C A LIHC 69462783 + 69462763 69462803 41 TGTGAAGTTCATTTCCAATCCGCCCTCCATGGTGGCAGCGG TGTGAAGTTCATTTCCAATCCGCCATCCATGGTGGCAGCGG < 41bp 0.482144745070986 0.853903675858515 0.05725667 0.35146368 prediction 0.707807351717031 Functional Gain - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69462783 chr11:69462787 synonymous SNV . 0 25 hm5C_associated_SNPs_99290 0 0 1 0 1 Ribosome 0.50023164392313 0.500225079217755 0 0 hm5C_site_52435 DeepMRMD:0;iRNA_m5C:0 52436 chr4 113575287 113575287 1 + C A UCEC 113575283 + 113575263 113575303 41 ATAGACAGGCAAAACTTAATCAGCCTCGGGAAAAGAAAAGA ATAGACAGGCAAAACTTAATCAGCATCGGGAAAAGAAAAGA < 41bp 0.494212840532246 0.853887938481817 0.14744443 0.16763914 prediction 0.707775876963635 Functional Gain - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113575283 chr4:113575287 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99291 0 0 1 0 2 cytosol 0.500231643921092 0.500231643917556 0 0 hm5C_site_52436 DeepMRMD:0;iRNA_m5C:0 52437 chr17 12887896 12887896 1 + C A STAD 12887892 + 12887872 12887912 41 CACCCAAGGTCCCCTTTGGCCAGCCGGGGGCTATGGCAGAC CACCCAAGGTCCCCTTTGGCCAGCAGGGGGCTATGGCAGAC < 41bp 0.496395760455613 0.853882630771096 0.36845386 0.48055774 prediction 0.707765261542191 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12887892 chr17:12887896 nonsynonymous SNV 0.841 0 25 hm5C_associated_SNPs_99292 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_52437 DeepMRMD:0;iRNA_m5C:0 52438 chr11 77921522 77921522 1 + C A SARC 77921518 + 77921498 77921538 41 ATGCCCGTGAGGGCGCTGCCCGCCCTGCCGCTTCTCTGGGA ATGCCCGTGAGGGCGCTGCCCGCCATGCCGCTTCTCTGGGA < 41bp 0.519934608865468 0.873768774781475 0.026727468 0.13955477 prediction 0.707668331832014 Functional Gain - USP35 ENSG00000118369 CDS Human protein_coding chr11:77921518 chr11:77921522 nonsynonymous SNV 0.204 2 25 hm5C_associated_SNPs_99293 0 0 0 0 0 nucleolus 0.500231643921093 0.500231648412636 0 8.98308716301699e-09 hm5C_site_52438 DeepMRMD:0;iRNA_m5C:8.98308716301699e-09 52439 chr16 818455 818455 1 + C A LUSC 818451 + 818431 818471 41 TGAAGGCGGAGGAGCGGCACCGCCCGGTGCGGGACTGGATC TGAAGGCGGAGGAGCGGCACCGCCAGGTGCGGGACTGGATC < 41bp 0.496080463573976 0.853713216042334 0.11862144 0.90606874 prediction 0.707426432084669 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:818451 chr16:818455 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_99294 0 0 1 0 1 nucleus 0.500231643921081 0.50023164395608 0.81213748 6.9997119211962e-11 hm5C_site_52439 DeepMRMD:0.81213748;iRNA_m5C:6.9997119211962e-11 52440 chr1 152957793 152957793 1 + C A LUAD 152957789 + 152957769 152957809 41 GAAACAACCTTGCCAGCCTCCACCCCAGGAACCATGCATCC GAAACAACCTTGCCAGCCTCCACCACAGGAACCATGCATCC < 41bp 0.516057637934786 0.869757633131184 0.039180815 0.02388528 prediction 0.707399990392796 Functional Gain - SPRR1A ENSG00000169474 CDS Human protein_coding chr1:152957789 chr1:152957793 synonymous SNV . 0 25 hm5C_associated_SNPs_99295 0 0 0 0 0 exosome 0.500231643922333 0.500231643921866 0 0 hm5C_site_52440 DeepMRMD:0;iRNA_m5C:0 52441 chr11 63994222 63994222 1 + C A UCEC 63994218 + 63994198 63994238 41 TGAGCCCCGCCCATGACCGTCGCCCACTGCCAGGTGGGGAC TGAGCCCCGCCCATGACCGTCGCCAACTGCCAGGTGGGGAC < 41bp 0.482537628475023 0.853627226646274 0.049702257 0.3994956 prediction 0.707254453292547 Functional Gain - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63994218 chr11:63994222 nonsynonymous SNV 0.439 1 25 hm5C_associated_SNPs_99296 0 0 1 0 0 Ribosome 0.500231643915794 0.500231643921445 0 1.13014042568693e-11 hm5C_site_52441 DeepMRMD:0;iRNA_m5C:1.13014042568693e-11 52442 chr13 103514654 103514654 1 + C A UCEC 103514650 + 103514630 103514670 41 TGTAGACGAAGGCTCCATATCACCCCGGACTCTTTCAGCCA TGTAGACGAAGGCTCCATATCACCACGGACTCTTTCAGCCA < 41bp 0.517125242077464 0.870671584346444 0.23869336 0.29502097 prediction 0.707092684537961 Functional Gain - BIVM-ERCC5;ERCC5 ENSG00000134899;ENSG00000270181 CDS Human other chr13:103514650 chr13:103514654 synonymous SNV . 0 25 hm5C_associated_SNPs_99297 0 0 1 0 0 unknown 0.500231643921093 0.500231643921222 0 2.58904009342587e-13 hm5C_site_52442 DeepMRMD:0;iRNA_m5C:2.58904009342587e-13 52443 chr20 48431585 48431585 1 + C A UCEC 48431581 + 48431561 48431601 41 ACTCATGAGGGTTTCAATGTCACCCTCCACACCACCCTGGT ACTCATGAGGGTTTCAATGTCACCATCCACACCACCCTGGT < 41bp 0.476137217222424 0.853545995303205 0.014580339 0.027998984 prediction 0.70709199060641 Functional Gain - SLC9A8 ENSG00000197818 CDS Human protein_coding chr20:48431581 chr20:48431585 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_99298 0 0 0 0 1 Nucleus 0.500231645478211 0.500240083177394 0 1.68753983664782e-05 hm5C_site_52443 DeepMRMD:0;iRNA_m5C:1.68753983664782e-05 52444 chr19 4945945 4945945 1 + C A UCEC 4945941 + 4945921 4945961 41 CGGAGCAACGACGGAGCGTACTCCCTAGTCCTGGCGGGGGG CGGAGCAACGACGGAGCGTACTCCATAGTCCTGGCGGGGGG < 41bp 0.477456460693922 0.853529603849615 0.1304718 0.9462006 prediction 0.70705920769923 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4945941 chr19:4945945 . 0.098 3 25 hm5C_associated_SNPs_99299 0 0 1 0 2 chromatin 0.500232360365864 0.500231642951782 0.8924012 0 hm5C_site_52444 DeepMRMD:0.8924012;iRNA_m5C:0 52445 chr6 160819053 160819053 1 + C A OV 160819049 + 160819029 160819069 41 AATGCGTGGATGCTGGACCTCACCCAAGCCATCCTGAACCT AATGCGTGGATGCTGGACCTCACCAAAGCCATCCTGAACCT < 41bp 0.463706633472302 0.853513614447202 0.05337438 0.4749177 prediction 0.707027228894404 Functional Gain - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160819049 chr6:160819053 nonsynonymous SNV 0.980 2 25 hm5C_associated_SNPs_99300 0 0 1 0 2 Endoplasmic reticulum 0.500231653269101 0.500232587392879 0 1.868247557546e-06 hm5C_site_52445 DeepMRMD:0;iRNA_m5C:1.868247557546e-06 52446 chr19 38869929 38869929 1 + C A STAD 38869925 + 38869905 38869945 41 ATGCACCAGCTCTTGGGCCTCAACCTCCTCTTCCTGCTGTC ATGCACCAGCTCTTGGGCCTCAACATCCTCTTCCTGCTGTC < 41bp 0.489679381422267 0.853503304197839 0.097905934 0.04524839 prediction 0.707006608395677 Functional Gain - PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38869925 chr19:38869929 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_99301 0 0 1 0 1 Ribosome 0.500231643910753 0.500231643920868 0 2.02295957762999e-11 hm5C_site_52446 DeepMRMD:0;iRNA_m5C:2.02295957762999e-11 52447 chr1 171174711 171174711 1 + C A LUAD 171174707 + 171174687 171174727 41 TCGCGTGCATTGGTCTCATCCAGCCCCTAGGTTCCATTTTC TCGCGTGCATTGGTCTCATCCAGCACCTAGGTTCCATTTTC < 41bp 0.494555428636859 0.853450355256494 0.19151214 0.16352385 prediction 0.706900710512989 Functional Gain - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171174707 chr1:171174711 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99302 0 0 0 0 1 exosome 0.500231644076335 0.500231643921092 0 0 hm5C_site_52447 DeepMRMD:0;iRNA_m5C:0 52448 chr6 108497939 108497939 1 + C A ESCA 108497935 + 108497915 108497955 41 CGTGAGCCTGGCTCAGCCCACGCCCAAGGTCAGCGGCCTTG CGTGAGCCTGGCTCAGCCCACGCCAAAGGTCAGCGGCCTTG < 41bp 0.520290703117933 0.873611878250007 0.0804258 0.6853126 prediction 0.706642350264148 Functional Gain - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108497935 chr6:108497939 synonymous SNV . 0 25 hm5C_associated_SNPs_99303 0 0 0 0 1 exosome 0.500231643920396 0.500231643797778 0.3706252 0 hm5C_site_52448 DeepMRMD:0.3706252;iRNA_m5C:0 52449 chrX 46713151 46713151 1 + C A LUAD 46713147 + 46713127 46713167 41 GATTGCAAGTGCACATTAGCCTGCCAACAATTTCGTGTGCG GATTGCAAGTGCACATTAGCCTGCAAACAATTTCGTGTGCG < 41bp 0.515260515423056 0.868563465112157 0.1279619 0.2673181 prediction 0.706605899378202 Functional Gain - RP2 ENSG00000102218 CDS Human protein_coding chrX:46713147 chrX:46713151 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99304 0 0 1 0 0 Ribosome 0.500231633569168 0.500225187993576 0 0 hm5C_site_52449 DeepMRMD:0;iRNA_m5C:0 52450 chr5 3600142 3600142 1 + C A COAD 3600138 + 3600118 3600158 41 GCAACACCCCGCCTTCCTGCCTAGCCACGGACTGTACACCT GCAACACCCCGCCTTCCTGCCTAGACACGGACTGTACACCT < 41bp 0.497521983160078 0.85318167906963 0.06424576 0.14312178 prediction 0.70636335813926 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600138 chr5:3600142 nonsynonymous SNV 0.984 3 25 hm5C_associated_SNPs_99305 0 0 0 0 0 exosome 0.500231643921096 0.50023164403286 0 2.23527640841326e-10 hm5C_site_52450 DeepMRMD:0;iRNA_m5C:2.23527640841326e-10 52451 chrX 106171783 106171783 1 + C A LUAD 106171779 + 106171759 106171799 41 GGCATGAGATGCACAGTCTTCTGCCAGGAATCCCGAGCCAA GGCATGAGATGCACAGTCTTCTGCAAGGAATCCCGAGCCAA < 41bp 0.522721795748905 0.875888091274586 0.11556816 0.45570236 prediction 0.706332591051362 Functional Gain - CLDN2 ENSG00000165376 CDS Human protein_coding chrX:106171779 chrX:106171783 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_99306 0 0 0 0 0 Ribosome 0.50023164376373 0.500224303621031 0 0 hm5C_site_52451 DeepMRMD:0;iRNA_m5C:0 52452 chr6 160557647 160557647 1 + C A UCEC 160557643 + 160557623 160557663 41 TGCAGACCTGTTCCGCACGCCGCGCCTGAGGAAGCGCACCT TGCAGACCTGTTCCGCACGCCGCGACTGAGGAAGCGCACCT < 41bp 0.481096350326902 0.853097373019187 0.018477082 0.054733932 prediction 0.706194746038373 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557643 chr6:160557647 synonymous SNV . 0 25 hm5C_associated_SNPs_99307 0 0 0 0 2 nucleolus 0.500231643910262 0.500231700249388 0 1.12678252728315e-07 hm5C_site_52452 DeepMRMD:0;iRNA_m5C:1.12678252728315e-07 52453 chr1 32741979 32741979 1 + C A LGG 32741975 + 32741955 32741995 41 TGCACACGGTTGAGCCGCCCCTGCCAGACCCAGAAGCCCCA TGCACACGGTTGAGCCGCCCCTGCAAGACCCAGAAGCCCCA < 41bp 0.473200328868295 0.852985552143066 0.041584343 0.13986447 prediction 0.705971104286133 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32741975 chr1:32741979 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99308 0 0 1 0 1 Cytosol 0.500231643921142 0.500231643921085 0 0 hm5C_site_52453 DeepMRMD:0;iRNA_m5C:0 52454 chr11 36422827 36422827 1 + C A BLCA 36422823 + 36422803 36422843 41 TCTGCAGCTGAGCTCCAGCTCAGCCTGGAACAGGTGAAGGA TCTGCAGCTGAGCTCCAGCTCAGCATGGAACAGGTGAAGGA < 41bp 0.49410810490915 0.852655973293874 0.32304785 0.5326803 prediction 0.705311946587747 Functional Gain - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36422823 chr11:36422827 synonymous SNV . 0 25 hm5C_associated_SNPs_99309 0 0 0 0 1 Nucleus 0.500231644196201 0.500232385411291 0.0653606 1.48243017883409e-06 hm5C_site_52454 DeepMRMD:0.0653606;iRNA_m5C:1.48243017883409e-06 52455 chr12 52309921 52309921 1 + C A LIHC 52309917 + 52309897 52309937 41 ATGGCACCCGAGGTGCTGGACGAGCAGATCCGCACGGACTG ATGGCACCCGAGGTGCTGGACGAGAAGATCCGCACGGACTG < 41bp 0.495040956212021 0.852646656057546 0.3570996 0.53587306 prediction 0.705293312115091 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309917 chr12:52309921 nonsynonymous SNV 0.251 2 25 hm5C_associated_SNPs_99310 0 0 0 0 1 Endoplasmic reticulum 0.50022407551587 0.500231641857299 0.07174612 1.51326828579101e-05 hm5C_site_52455 DeepMRMD:0.07174612;iRNA_m5C:1.51326828579101e-05 52456 chr12 3390387 3390387 1 + C A UCEC 3390383 + 3390363 3390403 41 GATGCGATGCTGTGGTGTCACTGACTACACAGACTGGTACC GATGCGATGCTGTGGTGTCACTGAATACACAGACTGGTACC < 41bp 0.51139562806815 0.863941574975575 0.026426107 0.07197082 prediction 0.705091893814851 Functional Gain - TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3390383 chr12:3390387 nonsynonymous SNV 0.695 2 25 hm5C_associated_SNPs_99311 0 0 1 0 1 Nucleus 0.500231643680416 0.500231630061992 0 0 hm5C_site_52456 DeepMRMD:0;iRNA_m5C:0 52457 chr5 161113315 161113315 1 + C A UCEC 161113311 + 161113291 161113331 41 GTCAGTCGGATCCTGGACAACTTGCTTGAAGGCTATGACAA GTCAGTCGGATCCTGGACAACTTGATTGAAGGCTATGACAA < 41bp 0.485863409500326 0.852494660008654 0.1602276 0.1635685 prediction 0.704989320017308 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161113311 chr5:161113315 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99312 0 0 0 0 2 unknown 0.500231993881133 0.50023185333269 0 0 hm5C_site_52457 DeepMRMD:0;iRNA_m5C:0 52458 chr6 88046794 88046794 1 + C A SKCM 88046790 + 88046770 88046810 41 TCCAACATTCAAAAAGGAACCACCCAAAGAGAAAGAGTTTC TCCAACATTCAAAAAGGAACCACCAAAAGAGAAAGAGTTTC < 41bp 0.512151228498768 0.864605779903837 0.0112020075 0.043556184 prediction 0.704909102810138 Functional Gain - SMIM8 ENSG00000111850;ENSG00000226524 CDS Human other chr6:88046790 chr6:88046794 synonymous SNV . 0 25 hm5C_associated_SNPs_99313 0 0 1 0 2 Cytosol 0.500231643938893 0.500231933024581 0 5.78171375886782e-07 hm5C_site_52458 DeepMRMD:0;iRNA_m5C:5.78171375886782e-07 52459 chr10 98092351 98092351 1 + C A SKCM 98092347 + 98092327 98092367 41 GCCCTGTTGGGATGGACTGGCTCCCGGGTAAGTGCTACATG GCCCTGTTGGGATGGACTGGCTCCAGGGTAAGTGCTACATG < 41bp 0.520518993735698 0.872916882730876 0.09980005 0.9070497 prediction 0.704795777990357 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98092347 chr10:98092351 synonymous SNV . 0 25 hm5C_associated_SNPs_99314 0 0 0 0 1 exosome 0.500231640589961 0.500231643921092 0.8140994 6.66226229739664e-09 hm5C_site_52459 DeepMRMD:0.8140994;iRNA_m5C:6.66226229739664e-09 52460 chr12 100904815 100904815 1 + C A LUAD 100904811 + 100904791 100904831 41 GATGCCTGTAACAAAGAAGCCCCGCATGGGCGCGTCAGCAG GATGCCTGTAACAAAGAAGCCCCGAATGGGCGCGTCAGCAG < 41bp 0.515856469812321 0.868242201185972 0.018738031 0.013148278 prediction 0.704771462747301 Functional Gain - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100904811 chr12:100904815 synonymous SNV . 0 25 hm5C_associated_SNPs_99315 0 0 0 1 0 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_52460 DeepMRMD:0;iRNA_m5C:0 52461 chr5 145439617 145439617 1 + C A STAD 145439613 + 145439593 145439633 41 CCTGCCCTCACGGGGGAGCCCGCCCTCACGTGCATCAGCAG CCTGCCCTCACGGGGGAGCCCGCCATCACGTGCATCAGCAG < 41bp 0.516023449381962 0.868344923376501 0.30175883 0.93076956 prediction 0.704642947989079 Functional Gain - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145439613 chr5:145439617 nonsynonymous SNV 0.892 0 25 hm5C_associated_SNPs_99316 0 0 0 0 0 exosome 0.50023164395903 0.500231643921088 0.86153912 0 hm5C_site_52461 DeepMRMD:0.86153912;iRNA_m5C:0 52462 chr11 85610047 85610047 1 + C A STAD 85610043 + 85610023 85610063 41 CTAGAGATCTGGGAGAATGACTGGCTCAAAAAAGAGGTAAG CTAGAGATCTGGGAGAATGACTGGATCAAAAAAGAGGTAAG < 41bp 0.494823713037811 0.852314335380532 0.34901792 0.44664356 prediction 0.704628670761064 Functional Gain - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85610043 chr11:85610047 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99317 0 0 0 0 2 exosome 0.500231643787845 0.500231645390745 0 3.20580051393904e-09 hm5C_site_52462 DeepMRMD:0;iRNA_m5C:3.20580051393904e-09 52463 chr16 20476855 20476855 1 + C A SKCM 20476851 + 20476831 20476871 41 TTCCTCAGGCTGGCAAGCGACTCCCAAGCCCAGCCCTGTGG TTCCTCAGGCTGGCAAGCGACTCCAAAGCCCAGCCCTGTGG < 41bp 0.472555413727614 0.85230853103957 0.40316585 0.9743562 prediction 0.70461706207914 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20476851 chr16:20476855 nonsynonymous SNV 0.060 1 25 hm5C_associated_SNPs_99318 0 0 0 0 1 exosome 0.500231643921092 0.500233453623443 0.9487124 3.61940470039457e-06 hm5C_site_52463 DeepMRMD:0.9487124;iRNA_m5C:3.61940470039457e-06 52464 chr1 152659563 152659563 1 + C A SARC 152659559 + 152659539 152659579 41 AGCCACCACAGGCCCCGTCTCTTCCACCGGCGCCGGCACCA AGCCACCACAGGCCCCGTCTCTTCAACCGGCGCCGGCACCA < 41bp 0.511597434791688 0.863841205432928 0.11872971 0.35403836 prediction 0.704487541282481 Functional Gain - LCE2B ENSG00000159455 CDS Human protein_coding chr1:152659559 chr1:152659563 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_99319 0 0 0 0 0 unknown 0.50023164488221 0.500231639540458 0 0 hm5C_site_52464 DeepMRMD:0;iRNA_m5C:0 52465 chr21 43987140 43987140 1 + T G LGG 43987137 + 43987117 43987157 41 CCTGGTCAGTGGGCCCTACACACTCATCACCACCGCCGTCT CCTGGTCAGTGGGCCCTACACACGCATCACCACCGCCGTCT < 41bp 0.502566934346341 0.854781933005021 0.034337223 0.22284892 prediction 0.70442999731736 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43987137 chr21:43987140 nonsynonymous SNV 0.469 4 24 hm5C_associated_SNPs_99320 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643924548 0 6.9102501498719e-12 hm5C_site_52465 DeepMRMD:0;iRNA_m5C:6.9102501498719e-12 52466 chr15 48413351 48413351 1 + C A LUSC 48413347 + 48413327 48413367 41 GGACCTCCCTGCCCCAACGTCTCCCAAGGGCCACAGGTAGG GGACCTCCCTGCCCCAACGTCTCCAAAGGGCCACAGGTAGG < 41bp 0.480335273461207 0.852182090380201 0.16673458 0.9753649 prediction 0.704364180760403 Functional Gain - SLC24A5 ENSG00000188467 CDS Human protein_coding chr15:48413347 chr15:48413351 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_99321 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.9507298 0 hm5C_site_52466 DeepMRMD:0.9507298;iRNA_m5C:0 52467 chr2 131486990 131486990 1 + C A rs199627473 131486986 + 131486966 131487006 41 GACAGGAGCCCCACTACCTGCTCCCGGCTAACATCCTGCTC GACAGGAGCCCCACTACCTGCTCCAGGCTAACATCCTGCTC < 41bp 0.515615759370237 0.867747927420293 0.22391936 0.8600884 prediction 0.704264336100114 Functional Gain - GPR148 ENSG00000173302 CDS Human protein_coding chr2:131486986 chr2:131486990 nonsynonymous SNV 0.012 1 25 hm5C_associated_SNPs_99322 0 0 0 0 0 unknown 0.500231643921058 0.500231643921092 0.7201768 6.90558721316847e-14 hm5C_site_52467 DeepMRMD:0.7201768;iRNA_m5C:6.90558721316847e-14 52468 chr16 2203001 2203001 1 + C A UCEC 2202997 + 2202977 2203017 41 GTGCCTGGGCCAGGTGGACTCTGCCCATGAGCGTGTGGTGA GTGCCTGGGCCAGGTGGACTCTGCACATGAGCGTGTGGTGA < 41bp 0.507214560731091 0.859321653205733 0.1079801 0.62208015 prediction 0.704214184949284 Functional Gain - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2202997 chr16:2203001 synonymous SNV . 0 25 hm5C_associated_SNPs_99323 0 0 0 0 2 chromatin 0.500231643911565 0.500234978827096 0.2441603 6.66983106012431e-06 hm5C_site_52468 DeepMRMD:0.2441603;iRNA_m5C:6.66983106012431e-06 52469 chr15 78390803 78390803 1 + C A STAD 78390799 + 78390779 78390819 41 CGTGGACCCAGAAAACCCACCTGCCACGGCATTCCTCACAG CGTGGACCCAGAAAACCCACCTGCAACGGCATTCCTCACAG < 41bp 0.476410261564332 0.852098626715108 0.10310382 0.32579213 prediction 0.704197253430216 Functional Gain - SH2D7 ENSG00000183476 CDS Human protein_coding chr15:78390799 chr15:78390803 synonymous SNV . 0 25 hm5C_associated_SNPs_99324 0 0 0 0 1 unknown 0.500231643932452 0.50023166750517 0 4.71454368877744e-08 hm5C_site_52469 DeepMRMD:0;iRNA_m5C:4.71454368877744e-08 52470 chr16 20432686 20432686 1 + C A HNSC 20432682 + 20432662 20432702 41 GCCCCCAAGATGGTCGAGCACTCCCAGAGCAGCTACGGACT GCCCCCAAGATGGTCGAGCACTCCAAGAGCAGCTACGGACT < 41bp 0.544011970795628 0.896057509208068 0.17937365 0.95348597 prediction 0.70409107682488 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432682 chr16:20432686 nonsynonymous SNV 0.941 1 25 hm5C_associated_SNPs_99325 0 0 0 0 1 cytosol 0.50023164377606 0.500231644123494 0.90697194 6.94868385053837e-10 hm5C_site_52470 DeepMRMD:0.90697194;iRNA_m5C:6.94868385053837e-10 52471 chr11 22363194 22363194 1 + C A LUAD 22363190 + 22363170 22363210 41 CTGCACGTGCTTCGGCCTGCCCCGCCGCTACATTATCGCCA CTGCACGTGCTTCGGCCTGCCCCGACGCTACATTATCGCCA < 41bp 0.495424686525763 0.851958936122871 0.017057627 0.028280646 prediction 0.703917872245743 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363190 chr11:22363194 synonymous SNV . 0 25 hm5C_associated_SNPs_99326 0 0 0 0 0 unknown 0.500231643694257 0.500231748387003 0 2.09385492055958e-07 hm5C_site_52471 DeepMRMD:0;iRNA_m5C:2.09385492055958e-07 52472 chr5 23522821 23522821 1 + C A LUAD 23522817 + 23522797 23522837 41 GCAGTGGACAAGGGGCACCCCAACCGTTCAGCCCTCAGTCT GCAGTGGACAAGGGGCACCCCAACAGTTCAGCCCTCAGTCT < 41bp 0.518412982835407 0.870355723869391 0.04470241 0.048091352 prediction 0.703885482067968 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522817 chr5:23522821 nonsynonymous SNV 0.025 1 25 hm5C_associated_SNPs_99327 0 0 0 0 1 unknown 0.500231643921091 0.500231643921092 0 2.22044604925031e-15 hm5C_site_52472 DeepMRMD:0;iRNA_m5C:2.22044604925031e-15 52473 chr17 80680707 80680707 1 + C A LUSC 80680703 + 80680683 80680723 41 GAGGAGGTGGGCAGGAGGAACGGCCCTTTGTGGCCCGGTTT GAGGAGGTGGGCAGGAGGAACGGCACTTTGTGGCCCGGTTT < 41bp 0.499326937947756 0.851937597999771 0.87601805 0.8741534 prediction 0.703875195999542 Functional Gain - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680703 chr17:80680707 nonsynonymous SNV 0.027 0 25 hm5C_associated_SNPs_99328 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_52473 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 52474 chr3 46939575 46939575 1 + C A rs143863124 46939571 + 46939551 46939591 41 CATGGACCTGCAGGCCATGCCTACCGACGCTGTGACCGCAA CATGGACCTGCAGGCCATGCCTACAGACGCTGTGACCGCAA < 41bp 0.479251868476645 0.851913462381981 0.052235574 0.8825135 prediction 0.703826924763962 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939571 chr3:46939575 synonymous SNV . 0 25 hm5C_associated_SNPs_99329 2 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.765027 0 hm5C_site_52474 DeepMRMD:0.765027;iRNA_m5C:0 Metaphyseal chondrodysplasia Metaphyseal chondrodysplasia 52475 chr17 35736170 35736170 1 + C A COAD 35736166 + 35736146 35736186 41 TCTGACAGCAAAGTAAAAGTCAACCTTGTATATTTGGAGAG TCTGACAGCAAAGTAAAAGTCAACATTGTATATTTGGAGAG < 41bp 0.505426328074791 0.857316656507327 0.066429436 0.13493714 prediction 0.703780656865073 Functional Gain - C17orf78 ENSG00000167230 CDS Human other chr17:35736166 chr17:35736170 nonsynonymous SNV 0.375 0 25 hm5C_associated_SNPs_99330 0 0 0 0 1 unknown 0.500231643921076 0.50023164919596 0 1.05497679481203e-08 hm5C_site_52475 DeepMRMD:0;iRNA_m5C:1.05497679481203e-08 52476 chr20 32341223 32341223 1 + C A STAD 32341219 + 32341199 32341239 41 ACTGGGGATGCAGCCCTACCCACCCCTAGAGGTGAGCAGAG ACTGGGGATGCAGCCCTACCCACCACTAGAGGTGAGCAGAG < 41bp 0.526649014539888 0.878538554798555 0.15023896 0.2952702 prediction 0.703779080517335 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32341219 chr20:32341223 synonymous SNV . 0 25 hm5C_associated_SNPs_99331 0 0 1 2 1 chromatin 0.500231643880488 0.50023164398485 0 2.08724371120184e-10 hm5C_site_52476 DeepMRMD:0;iRNA_m5C:2.08724371120184e-10 52477 chr19 1535166 1535166 1 + C A UCEC 1535162 + 1535142 1535182 41 GGGTCCCCTGGCACCTCCTACTCCCTGGACGTCCCGCGGAG GGGTCCCCTGGCACCTCCTACTCCATGGACGTCCCGCGGAG < 41bp 0.492471338174942 0.851865944474197 0.23102671 0.98018074 prediction 0.703731888948395 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1535162 chr19:1535166 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_99332 0 0 0 0 0 exosome 0.500231643921062 0.500231643921092 0.96036148 6.06181771445335e-14 hm5C_site_52477 DeepMRMD:0.96036148;iRNA_m5C:6.06181771445335e-14 52478 chr7 121944025 121944025 1 + G T UCEC 121944029 - 121944009 121944049 41 TGGTCAACCACTCTTCATTCCACGCCATGGGCGCCTTGTGC TGGTCAACCACTCTTCATTCCACGACATGGGCGCCTTGTGC < 41bp 0.503597098007608 0.855394384687624 0.046266466 0.035887957 prediction 0.703594573360032 Functional Gain - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121944029 chr7:121944025 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99333 0 0 0 0 0 exosome 0.50023164390845 0.500231704283812 0 1.20750723864305e-07 hm5C_site_52478 DeepMRMD:0;iRNA_m5C:1.20750723864305e-07 52479 chrX 16168589 16168589 1 + C A COAD 16168585 + 16168565 16168605 41 TCCATGAGGAAAGCACCAACCAGACCTTCATTAGCTGTGCC TCCATGAGGAAAGCACCAACCAGAACTTCATTAGCTGTGCC < 41bp 0.507972387927364 0.859736380695165 0.24295864 0.35125092 prediction 0.703527985535602 Functional Gain - GRPR ENSG00000126010 CDS Human protein_coding chrX:16168585 chrX:16168589 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99334 0 0 0 0 0 chromatin 0.500231651215912 0.50023179181608 0 2.81200334795173e-07 hm5C_site_52479 DeepMRMD:0;iRNA_m5C:2.81200334795173e-07 52480 chrX 44703659 44703659 1 + C A LUAD 44703655 + 44703635 44703675 41 ACCCCATTGCTGATCTTATCCACACCATCGATATGAGGCAG ACCCCATTGCTGATCTTATCCACAACATCGATATGAGGCAG < 41bp 0.504912209682243 0.856636642447284 0.051843375 0.045005053 prediction 0.703448865530081 Functional Gain - DUSP21 ENSG00000189037 CDS Human protein_coding chrX:44703655 chrX:44703659 nonsynonymous SNV 0.345 1 25 hm5C_associated_SNPs_99335 0 0 0 0 0 exosome 0.50020678567322 0.500231644536219 0 4.97177259979331e-05 hm5C_site_52480 DeepMRMD:0;iRNA_m5C:4.97177259979331e-05 52481 chr8 99169923 99169923 1 + C A rs111665863 99169919 + 99169899 99169939 41 TAGTCGGGGAGGCCGGCGAGCTCCCGGCAGAGGCCAGCAAG TAGTCGGGGAGGCCGGCGAGCTCCAGGCAGAGGCCAGCAAG < 41bp 0.504194054409554 0.855868059844332 0.36325818 0.78118527 prediction 0.703348010869558 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99169919 chr8:99169923 synonymous SNV . 0 25 hm5C_associated_SNPs_99336 0 0 0 0 1 Mitochondrion 0.500231643921093 0.500231643921626 0.56237054 1.06670228205985e-12 hm5C_site_52481 DeepMRMD:0.56237054;iRNA_m5C:1.06670228205985e-12 52482 chr19 50912082 50912082 1 + C A UCEC 50912078 + 50912058 50912098 41 ATCGCCACCCTGGACTTCTCCTCGCTGTACCCGTCCATCAT ATCGCCACCCTGGACTTCTCCTCGATGTACCCGTCCATCAT < 41bp 0.531495463761901 0.882945106446535 0.15249625 0.28382155 prediction 0.702899285369267 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50912078 chr19:50912082 nonsynonymous SNV 0.937 4 25 hm5C_associated_SNPs_99337 0 0 1 0 2 Nucleus 0.500231643922191 0.500231641660196 0 0 hm5C_site_52482 DeepMRMD:0;iRNA_m5C:0 52483 chr5 140531408 140531408 1 + T G rs148897759 140531405 + 140531385 140531425 41 CGCTGGACTACGAGGCCCTGCAGTCTTTCGAGTTCCGCGTG CGCTGGACTACGAGGCCCTGCAGGCTTTCGAGTTCCGCGTG < 41bp 0.501689021572549 0.853092298236915 0.592246 0.90292 prediction 0.702806553328732 Functional Gain - PCDHB6 ENSG00000113211 CDS Human protein_coding chr5:140531405 chr5:140531408 nonsynonymous SNV 0.855 0 24 hm5C_associated_SNPs_99338 0 0 0 0 0 exosome 0.500231643921139 0.500231710436975 0.621348 1.33031671234463e-07 hm5C_site_52483 DeepMRMD:0.621348;iRNA_m5C:1.33031671234463e-07 52484 chr20 1285985 1285985 1 + C A HNSC 1285981 + 1285961 1286001 41 GACACACTGAGCCGGACGGACGCGCTGGAAGCCAGCAGCCT GACACACTGAGCCGGACGGACGCGATGGAAGCCAGCAGCCT < 41bp 0.489799802122426 0.851348412859651 0.25004482 0.29575926 prediction 0.702696825719302 Functional Gain - SNPH ENSG00000101298 CDS Human protein_coding chr20:1285981 chr20:1285985 nonsynonymous SNV 0.358 3 25 hm5C_associated_SNPs_99339 0 0 0 0 0 Endoplasmic reticulum 0.500231615997932 0.500231634286022 0 3.65761803067244e-08 hm5C_site_52484 DeepMRMD:0;iRNA_m5C:3.65761803067244e-08 52485 chr20 9496716 9496716 1 + C A rs2232264 9496712 + 9496692 9496732 41 GTGAAGGGCCGCTGTGGCCACAGCCAGTCGGAGCTGCAAGT GTGAAGGGCCGCTGTGGCCACAGCAAGTCGGAGCTGCAAGT < 41bp 0.514685898185219 0.865988795648253 0.4585716 0.4651755 prediction 0.702605794926068 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496712 chr20:9496716 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_99340 0 0 0 0 2 exosome 0.500231643921093 0.500231646211889 0 4.58159132854519e-09 hm5C_site_52485 DeepMRMD:0;iRNA_m5C:4.58159132854519e-09 52486 chrX 16142460 16142460 1 + C A UCEC 16142456 + 16142436 16142476 41 GCTTACCTCTGTTGGGGTGTCTGTCTTCACACTCACGGCGC GCTTACCTCTGTTGGGGTGTCTGTATTCACACTCACGGCGC < 41bp 0.503268649993082 0.854510486827416 0.15686873 0.31365114 prediction 0.702483673668667 Functional Gain - GRPR ENSG00000126010 CDS Human protein_coding chrX:16142456 chrX:16142460 synonymous SNV . 0 25 hm5C_associated_SNPs_99341 0 0 0 0 1 chromatin 0.500231737546816 0.500232363243396 0 1.25139316087264e-06 hm5C_site_52486 DeepMRMD:0;iRNA_m5C:1.25139316087264e-06 52487 chr3 50197135 50197135 1 + C A READ 50197131 + 50197111 50197151 41 CCTTCCCCACCCAGGACCACCTCCCGGCCACGCCCCGGGTC CCTTCCCCACCCAGGACCACCTCCAGGCCACGCCCCGGGTC < 41bp 0.466468882295922 0.851218226032007 0.46377406 0.9628401 prediction 0.702436452064014 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50197131 chr3:50197135 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_99342 0 0 0 0 1 Endoplasmic reticulum 0.500231643921461 0.500231643977465 0.9256802 1.12008180508383e-10 hm5C_site_52487 DeepMRMD:0.9256802;iRNA_m5C:1.12008180508383e-10 Response to amphetamines 52488 chr11 67160160 67160160 1 + C A UCEC 67160156 + 67160136 67160176 41 GACGGTGAACTCCTCCCGCTCTGCCTATGCCTGCTTTCTCT GACGGTGAACTCCTCCCGCTCTGCATATGCCTGCTTTCTCT < 41bp 0.473296089693013 0.851182459261263 0.21291807 0.88305616 prediction 0.702364918522525 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67160156 chr11:67160160 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99343 0 0 1 0 2 nucleus 0.500231643921086 0.500231643922918 0.76611232 3.66440211507779e-12 hm5C_site_52488 DeepMRMD:0.76611232;iRNA_m5C:3.66440211507779e-12 52489 chr5 110819778 110819778 1 + C A LUAD 110819774 + 110819754 110819794 41 CGCCTGGGAAGTGCCAGCAGCAGCCATGGCAGCATCCAGGA CGCCTGGGAAGTGCCAGCAGCAGCAATGGCAGCATCCAGGA < 41bp 0.505608634219399 0.856619510374374 0.21694478 0.27165896 prediction 0.702021752309951 Functional Gain - CAMK4 ENSG00000152495 CDS Human protein_coding chr5:110819774 chr5:110819778 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_99344 0 0 0 0 1 chromatin 0.500231643921097 0.500231643921242 0 2.88435941797616e-13 hm5C_site_52489 DeepMRMD:0;iRNA_m5C:2.88435941797616e-13 52490 chr19 5746053 5746053 1 + C A LUAD 5746049 + 5746029 5746069 41 CTGCTCCTATGGTTTGAGAACAGCCTGTTGTTTTCCCATAA CTGCTCCTATGGTTTGAGAACAGCATGTTGTTTTCCCATAA < 41bp 0.49117547546546 0.850979637521715 0.15102988 0.24757662 prediction 0.70195927504343 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5746049 chr19:5746053 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_99345 0 0 0 0 1 nucleus 0.500231643921092 0.500231644683174 0 1.52416368415231e-09 hm5C_site_52490 DeepMRMD:0;iRNA_m5C:1.52416368415231e-09 52491 chr11 121028765 121028765 1 + C A LUSC 121028761 + 121028741 121028781 41 CGGCGCCTTCCTGCGCTTCCCAGCCAACTGCGCCTTCGTGC CGGCGCCTTCCTGCGCTTCCCAGCAAACTGCGCCTTCGTGC < 41bp 0.511070071268298 0.862041570955169 0.43809205 0.39154637 prediction 0.701942999373742 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121028761 chr11:121028765 synonymous SNV . 0 25 hm5C_associated_SNPs_99346 0 0 0 0 0 exosome 0.500231603018841 0.500231684140409 0 1.62243135148898e-07 hm5C_site_52491 DeepMRMD:0;iRNA_m5C:1.62243135148898e-07 52492 chr12 6559767 6559767 1 + C A COAD 6559763 + 6559743 6559783 41 CTCTGGCTGACTTCAGGCAGCTGCCTGCCCGGACTCTCTCT CTCTGGCTGACTTCAGGCAGCTGCATGCCCGGACTCTCTCT < 41bp 0.482456307803838 0.850908119147419 0.1988526 0.43437812 prediction 0.701816238294839 Functional Gain - CD27 ENSG00000139193 CDS Human protein_coding chr12:6559763 chr12:6559767 nonsynonymous SNV 0.054 3 25 hm5C_associated_SNPs_99347 0 0 0 0 2 exosome 0.500231643921092 0.5002329849918 0 2.68214141607714e-06 hm5C_site_52492 DeepMRMD:0;iRNA_m5C:2.68214141607714e-06 52493 chr10 43870995 43870995 1 + C A LIHC 43870991 + 43870971 43871011 41 GACTGATCTGCGGAGGGCTCCTGGCCATTGCTGGGATCGCG GACTGATCTGCGGAGGGCTCCTGGACATTGCTGGGATCGCG < 41bp 0.507133409263428 0.858010721971368 0.18939379 0.4133793 prediction 0.701754625415879 Functional Gain - FXYD4 ENSG00000150201 CDS Human protein_coding chr10:43870991 chr10:43870995 nonsynonymous SNV 0.017 1 25 hm5C_associated_SNPs_99348 0 0 0 0 2 exosome 0.500231646450604 0.500231917370585 0 5.41839962009405e-07 hm5C_site_52493 DeepMRMD:0;iRNA_m5C:5.41839962009405e-07 52494 chr7 120969825 120969825 1 + C A rs17143291 120969821 + 120969801 120969841 41 CATGATCACCGCCGCCGCCACTACCGCCCCGATGGGCGCCA CATGATCACCGCCGCCGCCACTACAGCCCCGATGGGCGCCA < 41bp 0.524737711545784 0.875540341701643 0.29954246 0.6775212 prediction 0.701605260311717 Functional Gain - WNT16 ENSG00000002745 CDS Human protein_coding chr7:120969821 chr7:120969825 synonymous SNV . 0 25 hm5C_associated_SNPs_99349 0 0 0 0 1 exosome 0.500231643921092 0.500231643922624 0.3550424 3.06399350336051e-12 hm5C_site_52494 DeepMRMD:0.3550424;iRNA_m5C:3.06399350336051e-12 52495 chr22 24837050 24837050 1 + C A COAD 24837046 + 24837026 24837066 41 ATGTACCTGGCCATCGTCCTCTCCCACACCAATTCGGTTGT ATGTACCTGGCCATCGTCCTCTCCAACACCAATTCGGTTGT < 41bp 0.466481888253482 0.850801554202528 0.20419553 0.9635785 prediction 0.701603108405056 Functional Gain - ADORA2A ENSG00000128271 CDS Human protein_coding chr22:24837046 chr22:24837050 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99350 0 0 0 0 0 Endoplasmic reticulum 0.500231661963864 0.50023096324187 0.927157 0 hm5C_site_52495 DeepMRMD:0.927157;iRNA_m5C:0 52496 chr1 32051407 32051407 1 + C A UCEC 32051403 + 32051383 32051423 41 CTATACAAGGGAGGCATCTACAGCCACACGCCAGTGAGCCT CTATACAAGGGAGGCATCTACAGCAACACGCCAGTGAGCCT < 41bp 0.5195186710117 0.870303529273066 0.5537148 0.19227985 prediction 0.701569716522733 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32051403 chr1:32051407 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_99351 0 0 1 0 1 Ribosome 0.500231314704879 0.500228611019055 0 0 hm5C_site_52496 DeepMRMD:0;iRNA_m5C:0 52497 chr3 140406838 140406838 1 + C A UCEC 140406834 + 140406814 140406854 41 CAAGGAAGCCCTGAAGGAGACTGGCCAGGTGGCATTCCTGC CAAGGAAGCCCTGAAGGAGACTGGACAGGTGGCATTCCTGC < 41bp 0.517537403651932 0.868292373820648 0.3572265 0.45521158 prediction 0.701509940337431 Functional Gain - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140406834 chr3:140406838 synonymous SNV . 0 25 hm5C_associated_SNPs_99352 0 0 0 0 0 exosome 0.500231643916448 0.500231643895547 0 0 hm5C_site_52497 DeepMRMD:0;iRNA_m5C:0 52498 chr22 31658603 31658603 1 + C A rs575869944 31658599 + 31658579 31658619 41 AGGTGGAGGATGCAATTAGCCAGACGAGCCAGACACTTCAG AGGTGGAGGATGCAATTAGCCAGAAGAGCCAGACACTTCAG < 41bp 0.506346995542716 0.856971979221618 0.53635806 0.63213104 prediction 0.701249967357804 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658599 chr22:31658603 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_99353 0 0 1 0 1 Cytosol 0.500231924875318 0.500231643918987 0.19154596 0 hm5C_site_52498 DeepMRMD:0.19154596;iRNA_m5C:0 52499 chr1 84876615 84876615 1 + C A SARC 84876611 + 84876591 84876631 41 GGAAGAAGGCTATGATTATCCACCCACAGGGAGACGAAATG GGAAGAAGGCTATGATTATCCACCAACAGGGAGACGAAATG < 41bp 0.531609149000014 0.882230565010019 0.011490643 0.019293457 prediction 0.701242832020009 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84876611 chr1:84876615 synonymous SNV . 0 25 hm5C_associated_SNPs_99354 0 0 0 0 3 exosome 0.500231643933237 0.500231643921093 0 0 hm5C_site_52499 DeepMRMD:0;iRNA_m5C:0 52500 chr11 93912913 93912913 1 + C A UCEC 93912909 + 93912889 93912929 41 ATTATACTGTTAGCGTGTATCTACCTGGGCTATTACTTCAG ATTATACTGTTAGCGTGTATCTACATGGGCTATTACTTCAG < 41bp 0.527316401804 0.87790976250438 0.12171695 0.9554001 prediction 0.701186721400759 Functional Gain - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93912909 chr11:93912913 nonsynonymous SNV 0.929 4 25 hm5C_associated_SNPs_99355 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231619979435 0.9108002 0 hm5C_site_52500 DeepMRMD:0.9108002;iRNA_m5C:0 52501 chr7 100466340 100466340 1 + C A LUAD 100466336 + 100466316 100466356 41 CCTCTCAGGCCTCTGGGCCCCTCCCGGGCCCCCACTTTCCT CCTCTCAGGCCTCTGGGCCCCTCCAGGGCCCCCACTTTCCT < 41bp 0.474969705875771 0.850589831097566 0.09919143 0.96202993 prediction 0.701179662195133 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100466336 chr7:100466340 nonsynonymous SNV 0.075 0 25 hm5C_associated_SNPs_99356 0 0 1 0 0 Ribosome 0.500231643848585 0.500231644024694 0.92405986 3.52219364785356e-10 hm5C_site_52501 DeepMRMD:0.92405986;iRNA_m5C:3.52219364785356e-10 52502 chr11 20623156 20623156 1 + C A rs1443549 20623152 + 20623132 20623172 41 TGAGCCAGAGCACCGTGGTGCTGGCCACGGATGGAATCACG TGAGCCAGAGCACCGTGGTGCTGGACACGGATGGAATCACG < 41bp 0.492098493986519 0.85047084614412 0.36946535 0.43650895 prediction 0.70094169228824 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20623152 chr11:20623156 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_99357 0 0 0 0 1 unknown 0.500229800952752 0.500232120709265 0 4.63951302598353e-06 hm5C_site_52502 DeepMRMD:0;iRNA_m5C:4.63951302598353e-06 52503 chr8 105361464 105361464 1 + C A LUSC 105361460 + 105361440 105361480 41 TTCGCTCGTCCTGCTTGGCACTGGCCTCTTCATGAAGCGAT TTCGCTCGTCCTGCTTGGCACTGGACTCTTCATGAAGCGAT < 41bp 0.487084310406483 0.850462440745073 0.5621313 0.74479246 prediction 0.700924881490146 Functional Gain - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361460 chr8:105361464 synonymous SNV . 0 25 hm5C_associated_SNPs_99358 0 0 0 0 0 exosome 0.500231643919516 0.50023164392139 0.36532232 3.74655861890005e-12 hm5C_site_52503 DeepMRMD:0.36532232;iRNA_m5C:3.74655861890005e-12 52504 chr5 169535247 169535247 1 + C A LUAD 169535243 + 169535223 169535263 41 CAGGACATCTTGGATGGAGCCTCACCAGGGGGCACCACCAG CAGGACATCTTGGATGGAGCCTCAACAGGGGGCACCACCAG < 41bp 0.483531023124122 0.850459902193056 0.2413528 0.5318335 prediction 0.700919804386111 Functional Gain - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169535243 chr5:169535247 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_99359 0 0 0 0 0 exosome 0.500231644101867 0.500231643919279 0.0636669999999999 0 hm5C_site_52504 DeepMRMD:0.0636669999999999;iRNA_m5C:0 52505 chr6 106553637 106553637 1 + C A BRCA 106553633 + 106553613 106553653 41 ACATGTGGTGCAGCCCAAAGCTACCTCAGCAGCGATGGCAG ACATGTGGTGCAGCCCAAAGCTACATCAGCAGCGATGGCAG < 41bp 0.469491627084635 0.850450568027628 0.116101205 0.32456338 prediction 0.700901136055257 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106553633 chr6:106553637 synonymous SNV . 0 25 hm5C_associated_SNPs_99360 0 0 0 0 0 cytosol 0.500231643921164 0.50023164647738 0 5.11243158918262e-09 hm5C_site_52505 DeepMRMD:0;iRNA_m5C:5.11243158918262e-09 52506 chr19 7505332 7505332 1 + C A rs28489511 7505328 + 7505308 7505348 41 TCTCTCAGAAAGGGGGTCCCCAGCCAACACCGAGCCCGGCT TCTCTCAGAAAGGGGGTCCCCAGCAAACACCGAGCCCGGCT < 41bp 0.499757333276949 0.850446735651099 0.20941278 0.20038447 prediction 0.700893471302198 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7505328 chr19:7505332 nonsynonymous SNV 0.974 0 25 hm5C_associated_SNPs_99361 0 0 1 0 1 Cytosol 0.500231643971499 0.500231643921092 0 0 hm5C_site_52506 DeepMRMD:0;iRNA_m5C:0 52507 chr19 51633283 51633283 1 + C A GBM 51633279 + 51633259 51633299 41 CAGATGGTGAAGCCTTGGGACTCGCGGGGACAGGAGGCCAC CAGATGGTGAAGCCTTGGGACTCGAGGGGACAGGAGGCCAC < 41bp 0.499660075413057 0.850407610503197 0.21848005 0.4111441 prediction 0.700815221006394 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51633279 chr19:51633283 synonymous SNV . 0 25 hm5C_associated_SNPs_99362 0 0 0 0 0 exosome 0.500231635450728 0.500231644327802 0 1.7754147929594e-08 hm5C_site_52507 DeepMRMD:0;iRNA_m5C:1.7754147929594e-08 52508 chr11 64137197 64137197 1 + C A rs373556651 64137193 + 64137173 64137213 41 CATCCTGTACGCCGACGACACGCCCGGGGCCCCGGTGAAAA CATCCTGTACGCCGACGACACGCCAGGGGCCCCGGTGAAAA < 41bp 0.482791850678729 0.850370575104206 0.006179899 0.045113146 prediction 0.700741150208412 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137193 chr11:64137197 synonymous SNV . 0 25 hm5C_associated_SNPs_99363 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_52508 DeepMRMD:0;iRNA_m5C:0 52509 chr18 12325199 12325199 1 + C A UCEC 12325195 + 12325175 12325215 41 CCTGCAGGGCTTCCAGCTCACGCACTCGCTGGGCGGCGGCA CCTGCAGGGCTTCCAGCTCACGCAATCGCTGGGCGGCGGCA < 41bp 0.498594333443296 0.850362516155632 0.16312078 0.28193504 prediction 0.700725032311263 Functional Gain - TUBB6 ENSG00000176014 CDS Human protein_coding chr18:12325195 chr18:12325199 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_99364 0 0 1 0 0 Endoplasmic reticulum 0.500231643919597 0.500231643921092 0 2.99071878373525e-12 hm5C_site_52509 DeepMRMD:0;iRNA_m5C:2.99071878373525e-12 52510 chrX 65480070 65480070 1 + C A LUAD 65480066 + 65480046 65480086 41 TGTGACTGACCATGTCCATGCTGGCATGGAGACCCTCTTCA TGTGACTGACCATGTCCATGCTGGAATGGAGACCCTCTTCA < 41bp 0.489285327926462 0.850349423401717 0.05449736 0.074705064 prediction 0.700698846803435 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65480066 chrX:65480070 synonymous SNV . 0 25 hm5C_associated_SNPs_99365 0 0 0 0 1 Nucleus 0.500244732557062 0.500231700488308 0 0 hm5C_site_52510 DeepMRMD:0;iRNA_m5C:0 52511 chr11 18159113 18159113 1 + C A COAD 18159109 + 18159089 18159129 41 AGCGCCATCAGCACCGAGCGCTGCCTGTCCATCCTGTGGCC AGCGCCATCAGCACCGAGCGCTGCATGTCCATCCTGTGGCC < 41bp 0.479343343199338 0.850308543307044 0.04387003 0.06747401 prediction 0.700617086614087 Functional Gain - MRGPRX3 ENSG00000179826 CDS Human protein_coding chr11:18159109 chr11:18159113 nonsynonymous SNV 0.005 3 25 hm5C_associated_SNPs_99366 0 0 0 0 0 exosome 0.500231643937462 0.500232016893077 0 7.45911228783314e-07 hm5C_site_52511 DeepMRMD:0;iRNA_m5C:7.45911228783314e-07 52512 chr17 26823483 26823483 1 + C A UCEC 26823479 + 26823459 26823499 41 CCACTCCAGGCCCAGGCCATCTGCCTCCACCCTCTCTACGT CCACTCCAGGCCCAGGCCATCTGCATCCACCCTCTCTACGT < 41bp 0.509962713755474 0.860251532609459 0.06937224 0.34571695 prediction 0.70057763770797 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26823479 chr17:26823483 nonsynonymous SNV 0.970 0 25 hm5C_associated_SNPs_99367 0 0 0 0 1 unknown 0.500231643573832 0.500231648388516 0 9.62936863579955e-09 hm5C_site_52512 DeepMRMD:0;iRNA_m5C:9.62936863579955e-09 52513 chr18 9887582 9887582 1 + C A rs141130127 9887578 + 9887558 9887598 41 AGTCCCCAGAAGAAGCCATCCAGCCCAAGGAGGGTGACATT AGTCCCCAGAAGAAGCCATCCAGCACAAGGAGGGTGACATT < 41bp 0.511330761522481 0.86151885987561 0.13388553 0.04519859 prediction 0.700376196706258 Functional Gain - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9887578 chr18:9887582 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99368 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_52513 DeepMRMD:0;iRNA_m5C:0 52514 chr10 22680766 22680766 1 + C A LUAD 22680762 + 22680742 22680782 41 GGAAGACACACTCCTGAACACGCACGGGCTGTTGCAGTCAC GGAAGACACACTCCTGAACACGCAAGGGCTGTTGCAGTCAC < 41bp 0.468844377334323 0.85018691560247 0.09156412 0.19077635 prediction 0.70037383120494 Functional Gain - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22680762 chr10:22680766 synonymous SNV . 0 25 hm5C_associated_SNPs_99369 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_52514 DeepMRMD:0;iRNA_m5C:0 Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface) 52515 chr1 248570294 248570294 1 + C A LUAD 248570290 + 248570270 248570310 41 TGTGTTTTACACCATTCTCACACCCATGCTGAACCCCCTCA TGTGTTTTACACCATTCTCACACCAATGCTGAACCCCCTCA < 41bp 0.498101598063336 0.850073895066063 0.067515016 0.20626542 prediction 0.700147790132126 Functional Gain - OR2T1 ENSG00000175143 CDS Human protein_coding chr1:248570290 chr1:248570294 synonymous SNV . 0 25 hm5C_associated_SNPs_99370 0 0 0 0 0 unknown 0.500231644021444 0.500231395656622 0 0 hm5C_site_52515 DeepMRMD:0;iRNA_m5C:0 52516 chr1 154516505 154516505 1 + T G OV 154516502 + 154516482 154516522 41 CTGAGCTGGCTGGCACTCATCCATAGCGTCCGTGGGGAGGC CTGAGCTGGCTGGCACTCATCCAGAGCGTCCGTGGGGAGGC < 41bp 0.499326057630697 0.85005880157102 0.14066479 0.28351036 prediction 0.70011760314204 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516502 chr1:154516505 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_99371 0 0 0 0 2 exosome 0.500231632751658 0.500232858729316 0 2.45195531589637e-06 hm5C_site_52516 DeepMRMD:0;iRNA_m5C:2.45195531589637e-06 52517 chr16 223546 223546 1 + C A HNSC 223542 + 223522 223562 41 TTCACCCCTGCGGTGCACGCCTCCCTGGACAAGTTCCTGGC TTCACCCCTGCGGTGCACGCCTCCATGGACAAGTTCCTGGC < 41bp 0.522426423351312 0.872413906973197 0.33823946 0.9771749 prediction 0.699974967243769 Functional Gain - HBA2 ENSG00000188536 CDS Human protein_coding chr16:223542 chr16:223546 nonsynonymous SNV 0.655 2 25 hm5C_associated_SNPs_99372 0 0 1 0 1 Cytosol 0.500231643920412 0.500231627488512 0.9543498 0 hm5C_site_52517 DeepMRMD:0.9543498;iRNA_m5C:0 52518 chr10 104590666 104590666 1 + G T SARC 104590670 - 104590650 104590690 41 TTTGCCCTTCGGAGCAGGACCTCGCTCCTGTATAGGTGAGA TTTGCCCTTCGGAGCAGGACCTCGATCCTGTATAGGTGAGA < 41bp 0.487295546140466 0.849955397489643 0.10804835 0.39519233 prediction 0.699910794979286 Functional Gain - CYP17A1 ENSG00000148795 CDS Human protein_coding chr10:104590670 chr10:104590666 synonymous SNV . 0 25 hm5C_associated_SNPs_99373 0 0 0 0 1 exosome 0.500231643921817 0.50023164392109 0 0 hm5C_site_52518 DeepMRMD:0;iRNA_m5C:0 52519 chr11 77301379 77301379 1 + C A HNSC 77301375 + 77301355 77301395 41 GATGATGCTGGGGGGCATGTCCCCCGAGACGGGTGCGGTGA GATGATGCTGGGGGGCATGTCCCCAGAGACGGGTGCGGTGA < 41bp 0.515794403597141 0.8657364659717 0.15885517 0.41221023 prediction 0.699884124749117 Functional Gain - AQP11 ENSG00000178301 CDS Human protein_coding chr11:77301375 chr11:77301379 synonymous SNV . 0 25 hm5C_associated_SNPs_99374 0 0 1 0 0 Ribosome 0.500089056894556 0.500261683333888 0 0.000345252878663826 hm5C_site_52519 DeepMRMD:0;iRNA_m5C:0.000345252878663826 52520 chr19 33183180 33183180 1 + C A LUSC 33183176 + 33183156 33183196 41 GCCGCACCGCTTTCCCGTCGCTGCCCGACACCGATGACCAC GCCGCACCGCTTTCCCGTCGCTGCACGACACCGATGACCAC < 41bp 0.493082676432417 0.849940490733527 0.05382371 0.23286763 prediction 0.699880981467054 Functional Gain - NUDT19 ENSG00000213965 CDS Human protein_coding chr19:33183176 chr19:33183180 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_99375 0 0 1 0 0 Ribosome 0.499519930173015 0.500228901492502 0 0.000457802985004641 hm5C_site_52520 DeepMRMD:0;iRNA_m5C:0.000457802985004641 52521 chr1 77510043 77510043 1 + C A LUSC 77510039 + 77510019 77510059 41 ATGGGCGTGACGTGGGCAATCGCACCAGCCTGAGGGTCATC ATGGGCGTGACGTGGGCAATCGCAACAGCCTGAGGGTCATC < 41bp 0.518232219422396 0.868149247405516 0.37511826 0.5254779 prediction 0.699834055966239 Functional Gain - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77510039 chr1:77510043 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_99376 0 0 0 0 0 exosome 0.500231623902714 0.500231618474825 0.0509558000000001 0 hm5C_site_52521 DeepMRMD:0.0509558000000001;iRNA_m5C:0 52522 chrX 82764244 82764244 1 + C A COAD 82764240 + 82764220 82764260 41 TTTCCTCAAGTGTCCCAAGCCTGCCGCGCAGGAGATCTCCT TTTCCTCAAGTGTCCCAAGCCTGCAGCGCAGGAGATCTCCT < 41bp 0.480790435613495 0.849910463325682 0.028190464 0.061523527 prediction 0.699820926651364 Functional Gain - POU3F4 ENSG00000196767 CDS Human protein_coding chrX:82764240 chrX:82764244 synonymous SNV . 0 25 hm5C_associated_SNPs_99377 0 0 0 0 0 unknown 0.500231643921091 0.500231644330587 0 8.18990653073115e-10 hm5C_site_52522 DeepMRMD:0;iRNA_m5C:8.18990653073115e-10 52523 chr5 140501761 140501761 1 + C A THCA 140501757 + 140501737 140501777 41 CTGGGAATTGGGGAACTGGCCTCCCGGTCAGCCCGGGTGCT CTGGGAATTGGGGAACTGGCCTCCAGGTCAGCCCGGGTGCT < 41bp 0.501056411971209 0.850952615122241 0.40491408 0.89140403 prediction 0.699792406302064 Functional Gain - PCDHB4 ENSG00000081818 CDS Human protein_coding chr5:140501757 chr5:140501761 synonymous SNV . 0 25 hm5C_associated_SNPs_99378 0 0 0 0 0 exosome 0.500231643921092 0.500231643920434 0.78280806 0 hm5C_site_52523 DeepMRMD:0.78280806;iRNA_m5C:0 52524 chrX 82763695 82763695 1 + C A LUAD 82763691 + 82763671 82763711 41 CTGGGGGGCCAGCCCGGCACCGAACCCGTCTATCACGTCAA CTGGGGGGCCAGCCCGGCACCGAAACCGTCTATCACGTCAA < 41bp 0.498869319751621 0.849885653888143 0.055945873 0.16571432 prediction 0.699771307776286 Functional Gain - POU3F4 ENSG00000196767 CDS Human protein_coding chrX:82763691 chrX:82763695 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_99379 0 0 0 0 0 unknown 0.500231643921211 0.500231643921096 0 0 hm5C_site_52524 DeepMRMD:0;iRNA_m5C:0 52525 chr19 6750381 6750381 1 + C A rs28705365 6750377 + 6750357 6750397 41 AGCCGGCACGCCCGGCCTCCCGACCCCCCCGCTAGCGCCCC AGCCGGCACGCCCGGCCTCCCGACACCCCCGCTAGCGCCCC < 41bp 0.519210510760717 0.868986384284936 0.109831125 0.08341485 prediction 0.699551747048439 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750377 chr19:6750381 nonsynonymous SNV 0.796 2 25 hm5C_associated_SNPs_99380 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52525 DeepMRMD:0;iRNA_m5C:0 52526 chr3 46940936 46940936 1 + C A COAD 46940932 + 46940912 46940952 41 GAAGTACCTGTGGGGCTTCACAGTCTTCGGCTGGGGTACGC GAAGTACCTGTGGGGCTTCACAGTATTCGGCTGGGGTACGC < 41bp 0.502970234492307 0.85266080875553 0.6605772 0.6184385 prediction 0.699381148526447 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46940932 chr3:46940936 synonymous SNV . 0 25 hm5C_associated_SNPs_99381 0 0 0 0 1 exosome 0.500231634937581 0.500231643921092 0 1.79670220923356e-08 hm5C_site_52526 DeepMRMD:0;iRNA_m5C:1.79670220923356e-08 52527 chr17 26727744 26727744 1 + G T UCEC 26727748 - 26727728 26727768 41 CTGTGGCCTGTGTGAATAGCCTGGCCATGCTGACGGCCTCC CTGTGGCCTGTGTGAATAGCCTGGACATGCTGACGGCCTCC < 41bp 0.484345458875947 0.849654390799002 0.39008975 0.40564364 prediction 0.699308781598004 Functional Gain - SLC46A1 ENSG00000076351 CDS Human protein_coding chr17:26727748 chr17:26727744 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_99382 0 0 0 0 1 Ribosome 0.500231595547599 0.500231643876558 0 9.66579192240857e-08 hm5C_site_52527 DeepMRMD:0;iRNA_m5C:9.66579192240857e-08 52528 chr17 74075584 74075584 1 + C A LIHC 74075580 + 74075560 74075600 41 TCAGGAAAGCATCCAGATCCCGAACAATGGGAGTGCGCCCC TCAGGAAAGCATCCAGATCCCGAAAAATGGGAGTGCGCCCC < 41bp 0.507400049069488 0.857054362364282 0.03005135 0.114001304 prediction 0.699308626589588 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075580 chr17:74075584 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_99383 0 0 0 0 2 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_52528 DeepMRMD:0;iRNA_m5C:0 52529 chr19 45570793 45570793 1 + C A rs75895703 45570789 + 45570769 45570809 41 CAGCCAGAGCCCCTCGCCATCACCCGCAAGAGAGAAGCTGA CAGCCAGAGCCCCTCGCCATCACCAGCAAGAGAGAAGCTGA < 41bp 0.478252314013558 0.849527767920596 0.047388107 0.15165451 prediction 0.699055535841193 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45570789 chr19:45570793 synonymous SNV . 0 25 hm5C_associated_SNPs_99384 0 0 1 0 1 chromatin 0.500231668010726 0.500231645423408 0 0 hm5C_site_52529 DeepMRMD:0;iRNA_m5C:0 52530 chr7 148481139 148481139 1 + C A CESC 148481135 + 148481115 148481155 41 CCAGTAAATCCCCTGAGTTGCTGGCTCGATACTGTGACTCC CCAGTAAATCCCCTGAGTTGCTGGATCGATACTGTGACTCC < 41bp 0.522335820866555 0.871858236819312 0.32995212 0.6408501 prediction 0.699044831905514 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148481135 chr7:148481139 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_99385 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0.2817002 0 hm5C_site_52530 DeepMRMD:0.2817002;iRNA_m5C:0 52531 chr5 134229242 134229242 1 + C A UCEC 134229238 + 134229218 134229258 41 TGTACTCTAGTCCTGTTTTACACCCCGTGGTGCCGCTTTTC TGTACTCTAGTCCTGTTTTACACCACGTGGTGCCGCTTTTC < 41bp 0.474092874012985 0.849498660453379 0.07351199 0.08199057 prediction 0.698997320906758 Functional Gain - TXNDC15 ENSG00000113621 CDS Human protein_coding chr5:134229238 chr5:134229242 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_99386 0 0 1 0 1 Ribosome 0.500231644000347 0.500231639138281 0 0 hm5C_site_52531 DeepMRMD:0;iRNA_m5C:0 52532 chr18 54815010 54815010 1 + C A COAD 54815006 + 54814986 54815026 41 AAGAAGCAGCTGTGCCAGCACTCCCTCCAGAGCCAGAAGGC AAGAAGCAGCTGTGCCAGCACTCCATCCAGAGCCAGAAGGC < 41bp 0.474069697064027 0.849461430020748 0.011108518 0.9326296 prediction 0.698922860041496 Functional Gain - BOD1L2 ENSG00000228075 CDS Human protein_coding chr18:54815006 chr18:54815010 nonsynonymous SNV 0.027 0 25 hm5C_associated_SNPs_99387 0 0 0 0 0 Cytosol 0.50023165660186 0.50023272151033 0.8652592 2.1298169390338e-06 hm5C_site_52532 DeepMRMD:0.8652592;iRNA_m5C:2.1298169390338e-06 52533 chr19 36430947 36430947 1 + C A STAD 36430943 + 36430923 36430963 41 CTTTTTCCCGCCTGCACAAGCTGGCCCGGCTGGACATGACC CTTTTTCCCGCCTGCACAAGCTGGACCGGCTGGACATGACC < 41bp 0.510728657995124 0.860084883595786 0.48960158 0.49662322 prediction 0.698712451201323 Functional Gain - LRFN3 ENSG00000126243 CDS Human protein_coding chr19:36430943 chr19:36430947 nonsynonymous SNV 0.780 2 25 hm5C_associated_SNPs_99388 0 0 0 0 0 nucleus 0.50023164392139 0.500231643921092 0 0 hm5C_site_52533 DeepMRMD:0;iRNA_m5C:0 52534 chr1 159175686 159175686 1 + C A UCEC 159175682 + 159175662 159175702 41 TTGCTGCTAGGGTGCCATGCCTCCCTGGGCCACAGACTGGG TTGCTGCTAGGGTGCCATGCCTCCATGGGCCACAGACTGGG < 41bp 0.532741494252363 0.882090754555181 0.1124073 0.9748919 prediction 0.698698520605636 Functional Gain - ACKR1 ENSG00000213088 CDS Human protein_coding chr1:159175682 chr1:159175686 nonsynonymous SNV 0.209 2 25 hm5C_associated_SNPs_99389 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643919042 0.9497838 0 hm5C_site_52534 DeepMRMD:0.9497838;iRNA_m5C:0 52535 chr6 50696618 50696618 1 + C A LUAD 50696614 + 50696594 50696634 41 AGACTTATTTTGCTCTGTCCCTGGCCGTTTGTCCCTTCTTA AGACTTATTTTGCTCTGTCCCTGGACGTTTGTCCCTTCTTA < 41bp 0.50580398100782 0.854994956358649 0.08354026 0.4575664 prediction 0.69838195070166 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50696614 chr6:50696618 synonymous SNV . 0 25 hm5C_associated_SNPs_99390 0 0 0 0 1 unknown 0.500231643910422 0.50023164394193 0 6.30162588777239e-11 hm5C_site_52535 DeepMRMD:0;iRNA_m5C:6.30162588777239e-11 52536 chr1 6638783 6638783 1 + C A OV 6638779 + 6638759 6638799 41 GGGAAGCCAGACCTGCTTCCCGCGCACTGTGGTGTTTTTGG GGGAAGCCAGACCTGCTTCCCGCGAACTGTGGTGTTTTTGG < 41bp 0.491114197579831 0.849136433622449 0.24116156 0.8285968 prediction 0.698272867244898 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6638779 chr1:6638783 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99391 0 0 0 0 1 membrane 0.500231643922524 0.500231643932019 0.6571936 1.8991253014633e-11 hm5C_site_52536 DeepMRMD:0.6571936;iRNA_m5C:1.8991253014633e-11 52537 chr5 156816374 156816374 1 + C A UCEC 156816370 + 156816350 156816390 41 GATGAGTGTGTGGAGTTCCACCGGCTGTGGAGCGCCATGCA GATGAGTGTGTGGAGTTCCACCGGATGTGGAGCGCCATGCA < 41bp 0.502326834177658 0.851414142839484 0.1645413 0.27063358 prediction 0.69817461732365 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816370 chr5:156816374 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_99392 0 0 0 0 1 Cytosol 0.500232036141858 0.500224249042272 0 0 hm5C_site_52537 DeepMRMD:0;iRNA_m5C:0 52538 chr4 4322643 4322643 1 + C A SARC 4322639 + 4322619 4322659 41 TGATGCCAGTGTCGGTTAAACTCCCTGTCCACCCAGTGGAA TGATGCCAGTGTCGGTTAAACTCCATGTCCACCCAGTGGAA < 41bp 0.461323780155507 0.849062397071145 0.1279059 0.9496852 prediction 0.69812479414229 Functional Gain - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4322639 chr4:4322643 nonsynonymous SNV 0.026 4 25 hm5C_associated_SNPs_99393 0 0 0 0 0 nucleoplasm 0.50023170609609 0.500231644330979 0.8993704 0 hm5C_site_52538 DeepMRMD:0.8993704;iRNA_m5C:0 52539 chr8 2046745 2046745 1 + C A LUAD 2046741 + 2046721 2046761 41 TCAAAATCGCCGCCGTCAACCTGGCCGGCATCGGGGAGCCC TCAAAATCGCCGCCGTCAACCTGGACGGCATCGGGGAGCCC < 41bp 0.475250909008739 0.848961315044712 0.4470197 0.3579775 prediction 0.697922630089424 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2046741 chr8:2046745 nonsynonymous SNV 0.360 4 25 hm5C_associated_SNPs_99394 0 0 0 0 2 exosome 0.500231644256689 0.500231659796486 0 3.10795937874531e-08 hm5C_site_52539 DeepMRMD:0;iRNA_m5C:3.10795937874531e-08 52540 chrX 149671598 149671598 1 + C A LUAD 149671594 + 149671574 149671614 41 GAAGCCAGGCACCCCCAGGTCAGCCTCGGGCGACAGCCCCC GAAGCCAGGCACCCCCAGGTCAGCATCGGGCGACAGCCCCC < 41bp 0.476597703648799 0.84896068696047 0.12944478 0.18730423 prediction 0.697921373920941 Functional Gain - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149671594 chrX:149671598 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99395 0 0 0 0 1 Nucleus 0.500231643921092 0.500231580653235 0 0 hm5C_site_52540 DeepMRMD:0;iRNA_m5C:0 52541 chr1 16375058 16375058 1 + C A UCEC 16375054 + 16375034 16375074 41 GGCGGCAGTGGGCGTGGCCACAGTCTTTGCAGCTCCCTTCA GGCGGCAGTGGGCGTGGCCACAGTATTTGCAGCTCCCTTCA < 41bp 0.511441648193124 0.860372550790043 0.3829675 0.3932442 prediction 0.69786180519384 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16375054 chr1:16375058 synonymous SNV . 0 25 hm5C_associated_SNPs_99396 0 0 0 0 2 exosome 0.500231643894044 0.500231487983589 0 0 hm5C_site_52541 DeepMRMD:0;iRNA_m5C:0 52542 chr12 3649794 3649794 1 + C A rs202113481 3649790 + 3649770 3649810 41 AGGTGAACAGCCCCCCCTCCCAGCCCCCCCAGCCCGTCGTC AGGTGAACAGCCCCCCCTCCCAGCACCCCCAGCCCGTCGTC < 41bp 0.51714151532807 0.866058789337726 0.39405984 0.56125605 prediction 0.697834548019312 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3649790 chr12:3649794 nonsynonymous SNV 0.887 2 25 hm5C_associated_SNPs_99397 0 0 0 0 1 unknown 0.500231643921092 0.500231643921094 0.1225121 3.10862446895044e-15 hm5C_site_52542 DeepMRMD:0.1225121;iRNA_m5C:3.10862446895044e-15 52543 chr8 22865620 22865620 1 + G T KIRC 22865624 - 22865604 22865644 41 CTTTGTGTCCTCAGCCTTACCTCCCGGGTGGAGCTCTCCAC CTTTGTGTCCTCAGCCTTACCTCCAGGGTGGAGCTCTCCAC < 41bp 0.491716787968308 0.84888591281648 0.08451706 0.9328195 prediction 0.69777182563296 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22865624 chr8:22865620 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_99398 0 0 1 0 1 cytosol 0.500231643921093 0.500231643944764 0.865639 4.73405759038314e-11 hm5C_site_52543 DeepMRMD:0.865639;iRNA_m5C:4.73405759038314e-11 52544 chr3 30713916 30713916 1 + C A STAD 30713912 + 30713892 30713932 41 CTACTCTGTCTGTGGATGACCTGGCTAACAGTGGGCAGGTA CTACTCTGTCTGTGGATGACCTGGATAACAGTGGGCAGGTA < 41bp 0.482792620137466 0.8488729859668 0.42632163 0.43113306 prediction 0.697745971933601 Functional Gain - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30713912 chr3:30713916 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_99399 0 0 1 0 0 Cytosol 0.500231643742719 0.500231643929393 0 3.73346686899367e-10 hm5C_site_52544 DeepMRMD:0;iRNA_m5C:3.73346686899367e-10 52545 chr9 90501441 90501441 1 + C A HNSC 90501437 + 90501417 90501457 41 AGCAGGCCCTCTTGCCCTCCCAGCCTTCTGACTTTGCAGGG AGCAGGCCCTCTTGCCCTCCCAGCATTCTGACTTTGCAGGG < 41bp 0.502714853087441 0.85157271594926 0.06563774 0.14846969 prediction 0.697715725723638 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90501437 chr9:90501441 nonsynonymous SNV 0.006 2 25 hm5C_associated_SNPs_99400 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52545 DeepMRMD:0;iRNA_m5C:0 52546 chr1 47603326 47603326 1 + C A rs148805480 47603322 + 47603302 47603342 41 CAGCAGTTCCCGTGCCCTCCCTCCCACTGGCTCTTCGGGCA CAGCAGTTCCCGTGCCCTCCCTCCAACTGGCTCTTCGGGCA < 41bp 0.475572556650005 0.848812749849287 0.28034568 0.9450811 prediction 0.697625499698574 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47603322 chr1:47603326 nonsynonymous SNV 0.181 3 25 hm5C_associated_SNPs_99401 0 0 0 0 1 exosome 0.500231643922757 0.500231643921092 0.8901622 0 hm5C_site_52546 DeepMRMD:0.8901622;iRNA_m5C:0 52547 chr14 21961331 21961331 1 + C A STAD 21961327 + 21961307 21961347 41 CTGTGGAAAGTAGTCCTGAGCGGCCTATGAACAACAGCCCT CTGTGGAAAGTAGTCCTGAGCGGCATATGAACAACAGCCCT < 41bp 0.514085490355639 0.862829365567156 0.47067094 0.62947625 prediction 0.697487750423033 Functional Gain - TOX4 ENSG00000092203 CDS Human protein_coding chr14:21961327 chr14:21961331 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_99402 0 0 1 0 1 Ribosome 0.500231643921093 0.500231643921092 0.2589525 0 hm5C_site_52547 DeepMRMD:0.2589525;iRNA_m5C:0 52548 chr19 51297826 51297826 1 + C A rs55735528 51297822 + 51297802 51297842 41 TCCGGAAGCACCTGGGGAATCCCGCCAAAGATGGAGGGTGA TCCGGAAGCACCTGGGGAATCCCGACAAAGATGGAGGGTGA < 41bp 0.494943439768742 0.848686008910177 0.90463877 0.47956693 prediction 0.697372017820355 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51297822 chr19:51297826 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_99403 0 0 0 0 0 nucleus 0.500231644223766 0.500231645947997 0 3.44846151634215e-09 hm5C_site_52548 DeepMRMD:0;iRNA_m5C:3.44846151634215e-09 52549 chr4 39448911 39448911 1 + C A UCEC 39448907 + 39448887 39448927 41 CCAGTTTCTGCAGGACATCACCCGCCTGAGCTCCCCCACGC CCAGTTTCTGCAGGACATCACCCGACTGAGCTCCCCCACGC < 41bp 0.490496511293668 0.848536741082032 0.25700703 0.5880087 prediction 0.697073482164063 Functional Gain - KLB ENSG00000134962 CDS Human protein_coding chr4:39448907 chr4:39448911 synonymous SNV . 0 25 hm5C_associated_SNPs_99404 0 0 0 0 0 Cytosol 0.500231643930778 0.500231643921125 0.1760174 0 hm5C_site_52549 DeepMRMD:0.1760174;iRNA_m5C:0 52550 chr20 45362402 45362402 1 + C A UCEC 45362398 + 45362378 45362418 41 CATTCTTTGTCTGACAGGTTCACCCTGAGCTTTGGCCACAG CATTCTTTGTCTGACAGGTTCACCATGAGCTTTGGCCACAG < 41bp 0.489497479033528 0.848526193963045 0.017740846 0.02176094 prediction 0.69705238792609 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45362398 chr20:45362402 nonsynonymous SNV 0.373 1 25 hm5C_associated_SNPs_99405 0 0 1 0 1 Nucleus 0.500231643923071 0.500231643921092 0 0 hm5C_site_52550 DeepMRMD:0;iRNA_m5C:0 52551 chr4 134072763 134072763 1 + C A STAD 134072759 + 134072739 134072779 41 ATCTACGCGGTGAGCGCCACCGACCGGGATGAGGGCGCCAA ATCTACGCGGTGAGCGCCACCGACAGGGATGAGGGCGCCAA < 41bp 0.490080399580987 0.848525317613085 0.07590991 0.15655103 prediction 0.69705063522617 Functional Gain - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134072759 chr4:134072763 synonymous SNV . 0 25 hm5C_associated_SNPs_99406 0 0 0 0 0 cytosol 0.500231649769143 0.500231643921092 0 0 hm5C_site_52551 DeepMRMD:0;iRNA_m5C:0 52552 chr4 134072784 134072784 1 + C A LUAD 134072780 + 134072760 134072800 41 GACCGGGATGAGGGCGCCAACGCCCAGCTTGCCTACTCTAT GACCGGGATGAGGGCGCCAACGCCAAGCTTGCCTACTCTAT < 41bp 0.473278539146313 0.848521701457755 0.36265782 0.9313707 prediction 0.697043402915509 Functional Gain - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134072780 chr4:134072784 nonsynonymous SNV 0.947 0 25 hm5C_associated_SNPs_99407 0 0 0 0 0 cytosol 0.500231643912406 0.500231643921092 0.8627414 1.73725478447295e-11 hm5C_site_52552 DeepMRMD:0.8627414;iRNA_m5C:1.73725478447295e-11 52553 chr15 39874401 39874401 1 + C A rs59086883 39874397 + 39874377 39874417 41 TCTCTCCTGTCTAACAGAGTCTGGCGGAGACAACAGCGTGT TCTCTCCTGTCTAACAGAGTCTGGAGGAGACAACAGCGTGT < 41bp 0.515633832831717 0.864152972689984 0.37658563 0.28324014 prediction 0.697038279716534 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39874397 chr15:39874401 synonymous SNV . 0 25 hm5C_associated_SNPs_99408 0 0 1 0 0 cytosol 0.500231646241076 0.500231644331873 0 0 hm5C_site_52553 DeepMRMD:0;iRNA_m5C:0 52554 chr1 168282089 168282089 1 + C A SKCM 168282085 + 168282065 168282105 41 CCCCTTCTGTGCTCTCCACCCAAGCACCCACTTCGGCTGGT CCCCTTCTGTGCTCTCCACCCAAGAACCCACTTCGGCTGGT < 41bp 0.508151641907829 0.856666529485583 0.4095387 0.7363094 prediction 0.697029775155508 Functional Gain - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168282085 chr1:168282089 nonsynonymous SNV 0.024 2 25 hm5C_associated_SNPs_99409 0 0 0 0 0 cytosol 0.500231643890372 0.500231789505562 0.4726188 2.91230380478069e-07 hm5C_site_52554 DeepMRMD:0.4726188;iRNA_m5C:2.91230380478069e-07 52555 chr1 206666659 206666659 1 + C A LUAD 206666655 + 206666635 206666675 41 CGAGCAAAGGGGGCTCAGGCCTCGCCGCCTCCCATAGCTCC CGAGCAAAGGGGGCTCAGGCCTCGACGCCTCCCATAGCTCC < 41bp 0.519743965997615 0.868149325728325 0.7154546 0.8863635 prediction 0.696810719461419 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206666655 chr1:206666659 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_99410 0 0 0 0 2 Cytosol 0.500231643921096 0.500231643923025 0.3418178 3.85935727820197e-12 hm5C_site_52555 DeepMRMD:0.3418178;iRNA_m5C:3.85935727820197e-12 52556 chr2 29226496 29226496 1 + C A rs541890653 29226492 + 29226472 29226512 41 CGTGTGCCTGGCTCCCTTCCCAGCCCGTTACCTCCAGGCCA CGTGTGCCTGGCTCCCTTCCCAGCACGTTACCTCCAGGCCA < 41bp 0.505477527458092 0.853861986038813 0.44900453 0.84397674 prediction 0.696768917161441 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29226492 chr2:29226496 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_99411 0 0 0 0 1 unknown 0.500231643920364 0.500231643921092 0.68795348 1.45683465291313e-12 hm5C_site_52556 DeepMRMD:0.68795348;iRNA_m5C:1.45683465291313e-12 52557 chr19 50881931 50881931 1 + C A UCEC 50881927 + 50881907 50881947 41 CCTGGTGGATCTGAGGCAGGCAGCCAGGGCTCCGGGGAAGG CCTGGTGGATCTGAGGCAGGCAGCAAGGGCTCCGGGGAAGG < 41bp 0.503377383060125 0.851716131887835 0.57887954 0.5716017 prediction 0.696677497655419 Functional Gain - NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881927 chr19:50881931 nonsynonymous SNV 0.577 2 25 hm5C_associated_SNPs_99412 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52557 DeepMRMD:0;iRNA_m5C:0 52558 chr19 48525449 48525449 1 + C A UCEC 48525445 + 48525425 48525465 41 AGGAATTTCCGCGTTGGTCCCTGGCTTTCCTTGTCACTTTC AGGAATTTCCGCGTTGGTCCCTGGATTTCCTTGTCACTTTC < 41bp 0.498706126138607 0.848236567059929 0.06876016 0.4291797 prediction 0.696473134119857 Functional Gain - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48525445 chr19:48525449 synonymous SNV . 0 25 hm5C_associated_SNPs_99413 0 0 0 0 1 unknown 0.500229793199114 0.500231573581041 0 3.56076385310544e-06 hm5C_site_52558 DeepMRMD:0;iRNA_m5C:3.56076385310544e-06 52559 chrX 130219620 130219620 1 + C A KICH 130219616 + 130219596 130219636 41 GTTGCTGGTCTACCTGATGCCACCCTGCCACAGTGATACCC GTTGCTGGTCTACCTGATGCCACCATGCCACAGTGATACCC < 41bp 0.452107019728612 0.848173136574755 0.02103439 0.122638196 prediction 0.696346273149509 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130219616 chrX:130219620 synonymous SNV . 0 25 hm5C_associated_SNPs_99414 0 0 0 0 2 unknown 0.500231693520296 0.500237994941791 0 1.26028429912051e-05 hm5C_site_52559 DeepMRMD:0;iRNA_m5C:1.26028429912051e-05 52560 chr16 55735808 55735808 1 + C A LUAD 55735804 + 55735784 55735824 41 TATGGCATCACGCCAGAGAACGAGCACCACCTGGTGGCTCA TATGGCATCACGCCAGAGAACGAGAACCACCTGGTGGCTCA < 41bp 0.510731334940646 0.858808784051871 0.7234144 0.80181205 prediction 0.696154898222451 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55735804 chr16:55735808 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_99415 0 0 0 0 2 exosome 0.500231627124342 0.500231514659756 0.1567953 0 hm5C_site_52560 DeepMRMD:0.1567953;iRNA_m5C:0 52561 chr19 57743153 57743153 1 + C A HNSC 57743149 + 57743129 57743169 41 AGCCCAGCAGCCCAGCAGCCCAGCCATGTGAGTCCCTTGGG AGCCCAGCAGCCCAGCAGCCCAGCAATGTGAGTCCCTTGGG < 41bp 0.514301315542773 0.862306597382289 0.24603271 0.38208193 prediction 0.696010563679031 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743149 chr19:57743153 synonymous SNV . 0 25 hm5C_associated_SNPs_99416 0 0 0 0 3 Cytosol 0.500231643884255 0.500231643921092 0 7.36741778695205e-11 hm5C_site_52561 DeepMRMD:0;iRNA_m5C:7.36741778695205e-11 52562 chr1 156702836 156702836 1 + C A LUAD 156702832 + 156702812 156702852 41 CCAGGTTGTAGACGTGGGCTCAGGCCAGGTGAGCCAGAGTC CCAGGTTGTAGACGTGGGCTCAGGACAGGTGAGCCAGAGTC < 41bp 0.494445235737171 0.847985416017756 0.8052292 0.87866026 prediction 0.695970832035513 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702832 chr1:156702836 synonymous SNV . 0 25 hm5C_associated_SNPs_99417 0 0 1 0 2 chromatin 0.500231643921092 0.500231643921092 0.14686212 0 hm5C_site_52562 DeepMRMD:0.14686212;iRNA_m5C:0 52563 chr19 51629030 51629030 1 + C A COAD 51629026 + 51629006 51629046 41 ACCACCCGCTCCTCGGTGCTCACCCTCATCCCACAGCCCCA ACCACCCGCTCCTCGGTGCTCACCATCATCCCACAGCCCCA < 41bp 0.52143527262194 0.869419414480825 0.05177909 0.12367064 prediction 0.695968283717771 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51629026 chr19:51629030 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_99418 0 0 0 0 0 exosome 0.50023164388054 0.500231643974914 0 1.88747906193498e-10 hm5C_site_52563 DeepMRMD:0;iRNA_m5C:1.88747906193498e-10 52564 chr1 111854862 111854862 1 + C A BLCA 111854858 + 111854838 111854878 41 TTCACCAACTGGGCCCAGTACCGGCCAGGCCTGGGGCGCTT TTCACCAACTGGGCCCAGTACCGGACAGGCCTGGGGCGCTT < 41bp 0.502276969025413 0.85023351002014 0.41448638 0.5530006 prediction 0.695913081989455 Functional Gain - CHIA ENSG00000134216 CDS Human protein_coding chr1:111854858 chr1:111854862 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_99419 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.1060012 0 hm5C_site_52564 DeepMRMD:0.1060012;iRNA_m5C:0 52565 chr3 129695568 129695568 1 + C A LUSC 129695564 + 129695544 129695584 41 TCCCAGATCTTTCAATCTGACTGGCTCTCCAAACGTCAGCA TCCCAGATCTTTCAATCTGACTGGATCTCCAAACGTCAGCA < 41bp 0.507505611125271 0.855451309575197 0.0050964057 0.0130598545 prediction 0.695891396899852 Functional Gain - TRH ENSG00000170893 CDS Human protein_coding chr3:129695564 chr3:129695568 nonsynonymous SNV 0.819 0 25 hm5C_associated_SNPs_99420 0 0 0 0 0 Cytosol 0.500231643908026 0.500231643921169 0 2.62865285094449e-11 hm5C_site_52565 DeepMRMD:0;iRNA_m5C:2.62865285094449e-11 52566 chr1 203467937 203467937 1 + C A SKCM 203467933 + 203467913 203467953 41 TATGCACGCTTCAACCGCATCAGCCGTATCAGGGCCGAAGA TATGCACGCTTCAACCGCATCAGCAGTATCAGGGCCGAAGA < 41bp 0.526446901481972 0.874378991548072 0.12619966 0.061684817 prediction 0.695864180132199 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203467933 chr1:203467937 nonsynonymous SNV 0.135 0 25 hm5C_associated_SNPs_99421 0 0 0 0 1 unknown 0.500231643921092 0.50023165794721 0 2.80522343132361e-08 hm5C_site_52566 DeepMRMD:0;iRNA_m5C:2.80522343132361e-08 52567 chr17 51901768 51901768 1 + C A UCEC 51901764 + 51901744 51901784 41 GAATGAAAGAGGAGCAGATACAACCAAGGCCAGCCGGAAAA GAATGAAAGAGGAGCAGATACAACAAAGGCCAGCCGGAAAA < 41bp 0.521606496696756 0.869473200934814 0.5115832 0.8710294 prediction 0.695733408476117 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901764 chr17:51901768 synonymous SNV . 0 25 hm5C_associated_SNPs_99422 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.7188924 0 hm5C_site_52567 DeepMRMD:0.7188924;iRNA_m5C:0 52568 chr17 61615473 61615473 1 + C A rs550764064 61615469 + 61615449 61615489 41 GGGAACGTGTCCGCGATCATCCAGCGCCTGTACTCGGGCAC GGGAACGTGTCCGCGATCATCCAGAGCCTGTACTCGGGCAC < 41bp 0.504825061372689 0.85267230300836 0.8310477 0.9024087 prediction 0.69569448327134 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61615469 chr17:61615473 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99423 0 0 0 0 1 unknown 0.50024247808708 0.500897623163335 0.142722 0.00131029015250994 hm5C_site_52568 DeepMRMD:0.142722;iRNA_m5C:0.00131029015250994 52569 chr9 127618524 127618524 1 + C A rs544368328 127618520 + 127618500 127618540 41 AGCTCAGGGCTCTCTCTAGTCCGGCCAGATGCTGCGCCTCT AGCTCAGGGCTCTCTCTAGTCCGGACAGATGCTGCGCCTCT < 41bp 0.502212406331939 0.850042498350658 0.8688334 0.8637834 prediction 0.695660184037438 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127618520 chr9:127618524 synonymous SNV . 0 25 hm5C_associated_SNPs_99424 0 0 0 0 2 nucleolus 0.500231643833763 0.500231643920789 0 1.7405299423956e-10 hm5C_site_52569 DeepMRMD:0;iRNA_m5C:1.7405299423956e-10 52570 chr3 125694456 125694456 1 + C A LUAD 125694452 + 125694432 125694472 41 AGACGCCTCCGGTGAGAGAGCGGTCTGAGCGAGTCGCTTTG AGACGCCTCCGGTGAGAGAGCGGTATGAGCGAGTCGCTTTG < 41bp 0.518193850055 0.865958134908322 0.56047165 0.53059036 prediction 0.695528569706644 Functional Gain - ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125694452 chr3:125694456 nonsynonymous SNV 0.062 1 25 hm5C_associated_SNPs_99425 0 0 0 0 1 exosome 0.500231643921115 0.500231676026284 0 6.42103379355774e-08 hm5C_site_52570 DeepMRMD:0;iRNA_m5C:6.42103379355774e-08 52571 chr7 48083164 48083164 1 + C A UCEC 48083160 + 48083140 48083180 41 GACTGGTATATCCACCACAGCAAGCCACCGACAGCCAGCCA GACTGGTATATCCACCACAGCAAGACACCGACAGCCAGCCA < 41bp 0.482600282629341 0.847695639887039 0.15157714 0.23052338 prediction 0.695391279774078 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48083160 chr7:48083164 nonsynonymous SNV 0.922 2 25 hm5C_associated_SNPs_99426 0 0 0 0 1 exosome 0.500231652679456 0.500231649521005 0 0 hm5C_site_52571 DeepMRMD:0;iRNA_m5C:0 52572 chr11 71906977 71906977 1 + C A TGCT 71906973 + 71906953 71906993 41 GCGCAGTGGGAGCTGCCTGCCAACCTTTCCATTTCTACTTC GCGCAGTGGGAGCTGCCTGCCAACATTTCCATTTCTACTTC < 41bp 0.509005230772935 0.856698637731236 0.010038197 0.008513302 prediction 0.695386813916603 Functional Gain - FOLR1 ENSG00000110195 CDS Human protein_coding chr11:71906973 chr11:71906977 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_99427 0 0 1 0 0 Endoplasmic reticulum 0.500231643957317 0.500231585742505 0 0 hm5C_site_52572 DeepMRMD:0;iRNA_m5C:0 52573 chr6 32610403 32610403 1 + C A rs3188543 32610399 + 32610379 32610419 41 TTCCACAGAGCCTGAGATTCCAGCCCCTATGTCAGAGCTCA TTCCACAGAGCCTGAGATTCCAGCACCTATGTCAGAGCTCA < 41bp 0.499833541145962 0.847668814650022 0.09194678 0.18163833 prediction 0.695337629300045 Functional Gain - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32610399 chr6:32610403 synonymous SNV . 0 25 hm5C_associated_SNPs_99428 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52573 DeepMRMD:0;iRNA_m5C:0 52574 chr19 39760211 39760211 1 + C A LUSC 39760207 + 39760187 39760227 41 GGCCACCGCTGACACTGACCCAGCCCTGGTGGACGTCTTGG GGCCACCGCTGACACTGACCCAGCACTGGTGGACGTCTTGG < 41bp 0.519940480408671 0.86759014854539 0.12350947 0.12687084 prediction 0.695299336273439 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760207 chr19:39760211 synonymous SNV . 0 25 hm5C_associated_SNPs_99429 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52574 DeepMRMD:0;iRNA_m5C:0 52575 chr12 122255151 122255151 1 + C A rs191488950 122255147 + 122255127 122255167 41 GCCACCAGACACCACCTCATCTGGCGACCAGAAGCGGCTGC GCCACCAGACACCACCTCATCTGGAGACCAGAAGCGGCTGC < 41bp 0.51676357534077 0.864412668506444 0.23490185 0.21765605 prediction 0.695298186331347 Functional Gain - SETD1B ENSG00000139718 CDS Human protein_coding chr12:122255147 chr12:122255151 synonymous SNV . 0 25 hm5C_associated_SNPs_99430 0 0 1 0 1 chromatin 0.500231643912137 0.500231643468132 0 0 hm5C_site_52575 DeepMRMD:0;iRNA_m5C:0 52576 chr6 33383399 33383399 1 + C A COAD 33383395 + 33383375 33383415 41 TCCGGATGTTTGCTTCCTTCCACCCTTCTGCCAGCACCGCA TCCGGATGTTTGCTTCCTTCCACCATTCTGCCAGCACCGCA < 41bp 0.527326249008986 0.87492066288259 0.037181765 0.056743264 prediction 0.695188827747208 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33383395 chr6:33383399 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99431 0 0 1 0 2 Cytosol 0.500231643930095 0.500231643909089 0 0 hm5C_site_52576 DeepMRMD:0;iRNA_m5C:0 52577 chr22 24124604 24124604 1 + C A TGCT 24124600 + 24124580 24124620 41 ACCCGGCGTGTAGACAGTCCCGTGCCCCGCAGGGCCACTGA ACCCGGCGTGTAGACAGTCCCGTGACCCGCAGGGCCACTGA < 41bp 0.509696368574194 0.857280723059024 0.08493197 0.33131272 prediction 0.695168708969661 Functional Gain - MMP11 ENSG00000099953;ENSG00000267954 CDS Human other chr22:24124600 chr22:24124604 nonsynonymous SNV 0.958 4 25 hm5C_associated_SNPs_99432 0 0 1 0 2 Endoplasmic reticulum 0.500231641017665 0.500231643928834 0 5.82233816714961e-09 hm5C_site_52577 DeepMRMD:0;iRNA_m5C:5.82233816714961e-09 52578 chr17 72929603 72929603 1 + C A UCEC 72929599 + 72929579 72929619 41 TCGGCATCTTCTACCGCATGCACGCTGTGTCCAGCCTGCTG TCGGCATCTTCTACCGCATGCACGATGTGTCCAGCCTGCTG < 41bp 0.499077787903903 0.847547671465943 0.013678789 0.029378593 prediction 0.695095342931886 Functional Gain - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72929599 chr17:72929603 nonsynonymous SNV 0.887 4 25 hm5C_associated_SNPs_99433 0 0 0 0 0 exosome 0.501029671057876 0.501044321125459 0 2.93001351656663e-05 hm5C_site_52578 DeepMRMD:0;iRNA_m5C:2.93001351656663e-05 52579 chr12 250326 250326 1 + C A rs144089662 250322 + 250302 250342 41 GGGCATCCAGTTCCTGATCTCACGCGGCTTCATCCCGGACA GGGCATCCAGTTCCTGATCTCACGAGGCTTCATCCCGGACA < 41bp 0.516181221186119 0.863666313968033 0.06984797 0.2134248 prediction 0.694970185563827 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:250322 chr12:250326 synonymous SNV . 0 25 hm5C_associated_SNPs_99434 0 0 0 0 1 nucleolus 0.500231606409938 0.500231643921092 0 7.50223083656465e-08 hm5C_site_52579 DeepMRMD:0;iRNA_m5C:7.50223083656465e-08 52580 chr1 154950494 154950494 1 + C A STAD 154950490 + 154950470 154950510 41 ATGCTGCCCAAGGACATAGCCAAGCTGGTCCCTAAAACCCA ATGCTGCCCAAGGACATAGCCAAGATGGTCCCTAAAACCCA < 41bp 0.506267690763664 0.853725289322565 0.3204791 0.15182793 prediction 0.6949151971178 Functional Gain - CKS1B ENSG00000173207 CDS Human protein_coding chr1:154950490 chr1:154950494 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99435 0 0 0 0 2 Ribosome 0.500231593591917 0.500231538660537 0 0 hm5C_site_52580 DeepMRMD:0;iRNA_m5C:0 52581 chr16 67203550 67203550 1 + C A rs35750776 67203546 + 67203526 67203566 41 TCTCCTAGGGAAGGACCCCACGCTCGGGGCCCCACTCCTGC TCTCCTAGGGAAGGACCCCACGCTAGGGGCCCCACTCCTGC < 41bp 0.490388890833964 0.847380545423717 0.016349167 0.07606688 prediction 0.694761090847434 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67203546 chr16:67203550 synonymous SNV . 0 25 hm5C_associated_SNPs_99436 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643829558 0 0 hm5C_site_52581 DeepMRMD:0;iRNA_m5C:0 52582 chr3 141497350 141497350 1 + C A HNSC 141497346 + 141497326 141497366 41 GCCGCCTCTTCCGTGACTTCCTAGCCACAGTGCCCACGTTC GCCGCCTCTTCCGTGACTTCCTAGACACAGTGCCCACGTTC < 41bp 0.514607247541583 0.86197645631139 0.051342517 0.06305164 prediction 0.694738417539615 Functional Gain - GRK7 ENSG00000114124 CDS Human protein_coding chr3:141497346 chr3:141497350 nonsynonymous SNV 0.344 1 25 hm5C_associated_SNPs_99437 0 0 0 0 0 exosome 0.5002316437453 0.500231593387571 0 0 hm5C_site_52582 DeepMRMD:0;iRNA_m5C:0 52583 chr16 4845805 4845805 1 + T G rs73513279 4845802 + 4845782 4845822 41 TGGGGAGACTGAAGAGCCACCAGTTTTTCCAGTCCACATGG TGGGGAGACTGAAGAGCCACCAGGTTTTCCAGTCCACATGG < 41bp 0.493564498109702 0.847346272834413 0.15427715 0.8909303 prediction 0.694692545668826 Functional Gain - SMIM22 ENSG00000267795 CDS Human protein_coding chr16:4845802 chr16:4845805 nonsynonymous SNV 0.617 0 24 hm5C_associated_SNPs_99438 0 0 0 1 2 Ribosome 0.500231643911963 0.500231644526423 0.7818606 1.22892074294612e-09 hm5C_site_52583 DeepMRMD:0.7818606;iRNA_m5C:1.22892074294612e-09 52584 chr7 100276231 100276231 1 + C A LGG 100276227 + 100276207 100276247 41 ATCTGGGATGCCATGAAGGGCGACCGTGCAGGTGACAGCTG ATCTGGGATGCCATGAAGGGCGACAGTGCAGGTGACAGCTG < 41bp 0.490553692197195 0.847338364421279 0.30709785 0.30334055 prediction 0.694676728842559 Functional Gain - GNB2 ENSG00000172354 CDS Human protein_coding chr7:100276227 chr7:100276231 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99439 0 0 1 0 1 Cytosol 0.500231643960776 0.500231642809811 0 0 hm5C_site_52584 DeepMRMD:0;iRNA_m5C:0 52585 chr3 43389420 43389420 1 + G T COAD 43389424 - 43389404 43389444 41 GCCAGGAGTAGGTGAACCCGCTATCTTTATCGAGCCGCCGC GCCAGGAGTAGGTGAACCCGCTATATTTATCGAGCCGCCGC < 41bp 0.498703382348898 0.847308335306525 0.17791662 0.24124226 prediction 0.694616670613051 Functional Gain - SNRK ENSG00000163788 CDS Human protein_coding chr3:43389424 chr3:43389420 nonsynonymous SNV 0.019 4 25 hm5C_associated_SNPs_99440 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_52585 DeepMRMD:0;iRNA_m5C:0 52586 chr14 38679010 38679010 1 + T G STAD 38679007 + 38678987 38679027 41 CCTCGTGCTCAGCGTGGACGCGGTCAACATGTTCACCAGCA CCTCGTGCTCAGCGTGGACGCGGGCAACATGTTCACCAGCA < 41bp 0.505498697464132 0.852792840577757 0.28784943 0.76878947 prediction 0.694588286227249 Functional Gain - SSTR1 ENSG00000139874 CDS Human protein_coding chr14:38679007 chr14:38679010 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_99441 0 0 0 0 0 nucleus 0.50023164393155 0.500231643923526 0.53757894 0 hm5C_site_52586 DeepMRMD:0.53757894;iRNA_m5C:0 52587 chrX 69497348 69497348 1 + C A UCEC 69497344 + 69497324 69497364 41 GCCGCTTCCTTCTGTCAGCTCAGCCCCTACAACTCCAGGCC GCCGCTTCCTTCTGTCAGCTCAGCACCTACAACTCCAGGCC < 41bp 0.528803207006724 0.876082592723891 0.24473351 0.30128837 prediction 0.694558771434334 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69497344 chrX:69497348 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99442 0 0 0 0 1 Cytosol 0.500231643921533 0.500231643921457 0 0 hm5C_site_52587 DeepMRMD:0;iRNA_m5C:0 52588 chr1 148932835 148932835 1 + C A LUAD 148932831 + 148932811 148932851 41 CCCGCCAGGCCTCCATAGAGCTGCCCAGCATGGCTGCATCC CCCGCCAGGCCTCCATAGAGCTGCACAGCATGGCTGCATCC < 41bp 0.510599252204029 0.857839001534468 0.091608256 0.08935475 prediction 0.694479498660879 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932831 chr1:148932835 . . 0 25 hm5C_associated_SNPs_99443 0 0 1 2 2 unknown 0.50023164391836 0.500231643921092 0 5.4642956826001e-12 hm5C_site_52588 DeepMRMD:0;iRNA_m5C:5.4642956826001e-12 52589 chr1 247582221 247582221 1 + C A LUSC 247582217 + 247582197 247582237 41 CCCAGAAGGGCTGCATCCCCCTCCCGAGGGGTCAGACAGAG CCCAGAAGGGCTGCATCCCCCTCCAGAGGGGTCAGACAGAG < 41bp 0.52837400271166 0.875588987222844 0.050005853 0.93238866 prediction 0.694429969022367 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247582217 chr1:247582221 nonsynonymous SNV 0.006 4 25 hm5C_associated_SNPs_99444 0 0 0 0 0 Nucleus 0.50023164391279 0.500231646987032 0.86477732 6.14848505442467e-09 hm5C_site_52589 DeepMRMD:0.86477732;iRNA_m5C:6.14848505442467e-09 52590 chrX 75649385 75649385 1 + T G COAD 75649382 + 75649362 75649402 41 ACTCCCGGTGAGGGACCAAGCACTTCCGTACTGCCAATCCC ACTCCCGGTGAGGGACCAAGCACGTCCGTACTGCCAATCCC < 41bp 0.504840982090662 0.852014966330912 0.2191213 0.31423923 prediction 0.694347968480499 Functional Gain - MAGEE1 ENSG00000198934 CDS Human protein_coding chrX:75649382 chrX:75649385 synonymous SNV . 0 24 hm5C_associated_SNPs_99445 0 0 1 0 0 membrane 0.500231643921092 0.500231642411529 0 0 hm5C_site_52590 DeepMRMD:0;iRNA_m5C:0 52591 chr4 74277725 74277725 1 + C A LUAD 74277721 + 74277701 74277741 41 TTTTCTTTTTAGGGCAGTAGCTCGCCTGAGCCAGAGATTTC TTTTCTTTTTAGGGCAGTAGCTCGACTGAGCCAGAGATTTC < 41bp 0.489038428077847 0.84711940809893 0.023806304 0.3085668 prediction 0.69423881619786 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74277721 chr4:74277725 synonymous SNV . 0 25 hm5C_associated_SNPs_99446 0 0 1 3 1 Endoplasmic reticulum 0.500231642906615 0.500231840138525 0 3.94463819164415e-07 hm5C_site_52591 DeepMRMD:0;iRNA_m5C:3.94463819164415e-07 52592 chr2 68882063 68882063 1 + C A LIHC 68882059 + 68882039 68882079 41 ACCACGGATGAAGTGCCAAACAGCCACTGGCCTGATTGCCT ACCACGGATGAAGTGCCAAACAGCAACTGGCCTGATTGCCT < 41bp 0.514958723560658 0.862075098987561 0.10860503 0.17094159 prediction 0.694232750853808 Functional Gain - PROKR1 ENSG00000169618 CDS Human protein_coding chr2:68882059 chr2:68882063 synonymous SNV . 0 25 hm5C_associated_SNPs_99447 0 0 0 0 1 exosome 0.500231500410984 0.500226024950974 0 0 hm5C_site_52592 DeepMRMD:0;iRNA_m5C:0 52593 chr17 6348467 6348467 1 + C A OV 6348463 + 6348443 6348483 41 TGGCAGAACATGGGGACCTCCGTGCGCCGGAGATCTCTCCA TGGCAGAACATGGGGACCTCCGTGAGCCGGAGATCTCTCCA < 41bp 0.509295621768213 0.856397094420823 0.86817396 0.89610475 prediction 0.694202945305221 Functional Gain - PIMREG ENSG00000129195 CDS Human protein_coding chr17:6348463 chr17:6348467 nonsynonymous SNV 0.007 1 25 hm5C_associated_SNPs_99448 0 0 0 1 0 unknown 0.500231643920976 0.500231642810126 0.05586158 0 hm5C_site_52593 DeepMRMD:0.05586158;iRNA_m5C:0 Warfarin maintenance dose 52594 chr17 66518980 66518980 1 + C A HNSC 66518976 + 66518956 66518996 41 GGATGAGATTTCTCCTCCTCCACCCAACCCAGTGGTTAAAG GGATGAGATTTCTCCTCCTCCACCAAACCCAGTGGTTAAAG < 41bp 0.455264329572143 0.847075194057663 0.122143924 0.1555439 prediction 0.694150388115326 Functional Gain - PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66518976 chr17:66518980 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99449 0 0 1 0 2 Ribosome 0.500231643920878 0.500231643921092 0 4.28324042900385e-13 hm5C_site_52594 DeepMRMD:0;iRNA_m5C:4.28324042900385e-13 52595 chr6 26458895 26458895 1 + C A ESCA 26458891 + 26458871 26458911 41 TCAGCTGCTGCCCTGCACTTCTCCCGGCCAGCCTCCCTCCT TCAGCTGCTGCCCTGCACTTCTCCAGGCCAGCCTCCCTCCT < 41bp 0.468128875034845 0.847053172100856 0.35736358 0.9378215 prediction 0.694106344201711 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26458891 chr6:26458895 synonymous SNV . 0 25 hm5C_associated_SNPs_99450 0 0 1 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.875643 0 hm5C_site_52595 DeepMRMD:0.875643;iRNA_m5C:0 52596 chr19 54445539 54445539 1 + C A LUSC 54445535 + 54445515 54445555 41 GACCACCTGCACATCTCCACCTCGCCCTGCTGAGGCCCGCC GACCACCTGCACATCTCCACCTCGACCTGCTGAGGCCCGCC < 41bp 0.519150841151098 0.866172448861803 0.26718128 0.87176347 prediction 0.69404321542141 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54445535 chr19:54445539 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_99451 0 0 0 0 0 unknown 0.500231643911907 0.500231643764458 0.74352694 0 hm5C_site_52596 DeepMRMD:0.74352694;iRNA_m5C:0 52597 chrX 591771 591771 1 + C A THCA 591767 + 591747 591787 41 TTGGAGAGCGGACTGGCGCGCTCCCGGGAGCTGGGGACGTC TTGGAGAGCGGACTGGCGCGCTCCAGGGAGCTGGGGACGTC < 41bp 0.460239967946475 0.846957192886017 0.12470308 0.7799623 prediction 0.693914385772033 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:591767 chrX:591771 synonymous SNV . 0 25 hm5C_associated_SNPs_99452 0 0 0 0 0 Nucleus 0.500230702849687 0.500231642085811 0.5599246 1.87847224886184e-06 hm5C_site_52597 DeepMRMD:0.5599246;iRNA_m5C:1.87847224886184e-06 52598 chr10 118354303 118354303 1 + C A ACC 118354299 + 118354279 118354319 41 TGGACTGGAAGAAGGGCTCCCAAGCCACCTACACACAGGCT TGGACTGGAAGAAGGGCTCCCAAGACACCTACACACAGGCT < 41bp 0.482457838806008 0.846898279337368 0.20660803 0.37796375 prediction 0.693796558674735 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118354299 chr10:118354303 nonsynonymous SNV 0.965 2 25 hm5C_associated_SNPs_99453 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_52598 DeepMRMD:0;iRNA_m5C:0 52599 chr17 56232932 56232932 1 + T G SKCM 56232929 + 56232909 56232949 41 ATGTCACCATCATGAACACTCAATTGTGTGTGGGCCTGGTA ATGTCACCATCATGAACACTCAAGTGTGTGTGGGCCTGGTA < 41bp 0.498445678473261 0.846890879694695 0.07804304 0.2655899 prediction 0.693781759389389 Functional Gain - OR4D1 ENSG00000141194 CDS Human protein_coding chr17:56232929 chr17:56232932 nonsynonymous SNV 0.029 0 24 hm5C_associated_SNPs_99454 0 0 0 0 0 unknown 0.500231643921093 0.500231643939033 0 3.58808538436506e-11 hm5C_site_52599 DeepMRMD:0;iRNA_m5C:3.58808538436506e-11 52600 chr11 62495908 62495908 1 + C A UCEC 62495904 + 62495884 62495924 41 TTTAGCACTAGTCCCGCCCACTCCCTTCTACTTCCAGGTCG TTTAGCACTAGTCCCGCCCACTCCATTCTACTTCCAGGTCG < 41bp 0.519524856116883 0.866391235520627 0.0494453 0.92641664 prediction 0.693732758807487 Functional Gain - TTC9C ENSG00000162222 CDS Human protein_coding chr11:62495904 chr11:62495908 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99455 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.85283328 0 hm5C_site_52600 DeepMRMD:0.85283328;iRNA_m5C:0 52601 chr16 30779808 30779808 1 + C A HNSC 30779804 + 30779784 30779824 41 AAGGCCAAGGTGGAAGAAACCAAGCGGAAGGAATCAGAACT AAGGCCAAGGTGGAAGAAACCAAGAGGAAGGAATCAGAACT < 41bp 0.489701341048376 0.846865932947449 0.6658757 0.879099 prediction 0.693731865894899 Functional Gain - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30779804 chr16:30779808 synonymous SNV . 0 25 hm5C_associated_SNPs_99456 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.4264466 0 hm5C_site_52601 DeepMRMD:0.4264466;iRNA_m5C:0 52602 chr10 82369197 82369197 1 + C A rs112089423 82369193 + 82369173 82369213 41 TCTTCAGCAGGACCTGGGAGCGCCCGCTGCGCCCAGTCTCC TCTTCAGCAGGACCTGGGAGCGCCAGCTGCGCCCAGTCTCC < 41bp 0.478363566729245 0.846860494662194 0.047359407 0.27021667 prediction 0.693720989324388 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82369193 chr10:82369197 nonsynonymous SNV 0.679 1 25 hm5C_associated_SNPs_99457 0 0 0 0 2 exosome 0.500231643920996 0.500231643922192 0 2.39097630583274e-12 hm5C_site_52602 DeepMRMD:0;iRNA_m5C:2.39097630583274e-12 52603 chr5 175717358 175717358 1 + C A OV 175717354 + 175717334 175717374 41 ATGCCCTCGGCAGAATATCCCAGGCCCACCTCAAGACTCTC ATGCCCTCGGCAGAATATCCCAGGACCACCTCAAGACTCTC < 41bp 0.498548050701823 0.846858603424978 0.72069585 0.69640005 prediction 0.693717206849956 Functional Gain - SIMC1 ENSG00000170085 CDS Human protein_coding chr5:175717354 chr5:175717358 synonymous SNV . 0 25 hm5C_associated_SNPs_99458 0 0 1 0 0 chromatin 0.50023161554303 0.50023111358601 0 0 hm5C_site_52603 DeepMRMD:0;iRNA_m5C:0 52604 chr19 34291419 34291419 1 + C A COAD 34291415 + 34291395 34291435 41 GCTTCACACACACGGCAGCACCGGCACCGCGGTGAGCCTGC GCTTCACACACACGGCAGCACCGGAACCGCGGTGAGCCTGC < 41bp 0.50202921973734 0.848878539079487 0.17311966 0.24073789 prediction 0.693698638684296 Functional Gain - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34291415 chr19:34291419 synonymous SNV . 0 25 hm5C_associated_SNPs_99459 0 0 0 0 2 Cytosol 0.500251513050214 0.500402016576089 0 0.000301007051748403 hm5C_site_52604 DeepMRMD:0;iRNA_m5C:0.000301007051748403 52605 chr9 112900226 112900226 1 + C A PAAD 112900222 + 112900202 112900242 41 TTGATGACCCCTTGGAGTATCAGGCTGGCCTCCTGGTGCAG TTGATGACCCCTTGGAGTATCAGGATGGCCTCCTGGTGCAG < 41bp 0.503565167458207 0.85026292057894 0.9144281 0.93322754 prediction 0.693395506241465 Functional Gain - AKAP2;PALM2-AKAP2 ENSG00000157654;ENSG00000241978 CDS Human other chr9:112900222 chr9:112900226 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99460 0 0 1 0 0 unknown 0.50023164311694 0.500231624084809 0.03759888 0 hm5C_site_52605 DeepMRMD:0.03759888;iRNA_m5C:0 52606 chr18 77798522 77798522 1 + C A OV 77798518 + 77798498 77798538 41 GTCTCAGGTTTCCCTGACTCCAGACTTCTCAGCCTGCCGAG GTCTCAGGTTTCCCTGACTCCAGAATTCTCAGCCTGCCGAG < 41bp 0.487397636526132 0.846678630450972 0.67304707 0.48348418 prediction 0.693357260901944 Functional Gain - RBFA ENSG00000101546 CDS Human protein_coding chr18:77798518 chr18:77798522 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99461 0 0 1 0 2 Ribosome 0.500231643893855 0.500231621162215 0 0 hm5C_site_52606 DeepMRMD:0;iRNA_m5C:0 52607 chrX 70384114 70384114 1 + T G UCEC 70384111 + 70384091 70384131 41 GGGGGAGACCCCCGCCGGATCACTGTCTTTGGCTCGGGCAT GGGGGAGACCCCCGCCGGATCACGGTCTTTGGCTCGGGCAT < 41bp 0.478088399410643 0.846558969774273 0.07965934 0.2600468 prediction 0.693117939548547 Functional Gain - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70384111 chrX:70384114 synonymous SNV . 0 24 hm5C_associated_SNPs_99462 0 0 0 0 0 exosome 0.500231646070357 0.500231751960491 0 2.11780267322936e-07 hm5C_site_52607 DeepMRMD:0;iRNA_m5C:2.11780267322936e-07 52608 chr7 143632638 143632638 1 + C A UCEC 143632634 + 143632614 143632654 41 TGTGCAGCCCAGTTATTTTTCTCCCTGGCCTTGGGTGGGAT TGTGCAGCCCAGTTATTTTTCTCCATGGCCTTGGGTGGGAT < 41bp 0.522708680965032 0.869183679272989 0.2203466 0.97021747 prediction 0.692949996615913 Functional Gain - OR2F2 ENSG00000221910 CDS Human protein_coding chr7:143632634 chr7:143632638 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_99463 0 0 0 0 0 unknown 0.500231643921092 0.500231643946052 0.94043494 4.99200680792455e-11 hm5C_site_52608 DeepMRMD:0.94043494;iRNA_m5C:4.99200680792455e-11 52609 chr18 908276 908276 1 + C A LUSC 908272 + 908252 908292 41 TGCCTCCCCGTTAGAGATGTCGCCCACGGGATCCTTAACGA TGCCTCCCCGTTAGAGATGTCGCCAACGGGATCCTTAACGA < 41bp 0.531262322378072 0.877721774498954 0.018742293 0.38529354 prediction 0.692918904241764 Functional Gain - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:908272 chr18:908276 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_99464 0 0 0 0 2 exosome 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_52609 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 52610 chr16 20442608 20442608 1 + C A THYM 20442604 + 20442584 20442624 41 GGGAATGTTGCCGTCCGTATCAGACCCACTCGGCCCTTCTG GGGAATGTTGCCGTCCGTATCAGAACCACTCGGCCCTTCTG < 41bp 0.48285350126605 0.846437907563624 0.90777314 0.9243665 prediction 0.692875815127249 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20442604 chr16:20442608 nonsynonymous SNV 0.804 2 25 hm5C_associated_SNPs_99465 0 0 0 0 2 cytosol 0.500231664121407 0.500231643923154 0.03318672 0 hm5C_site_52610 DeepMRMD:0.03318672;iRNA_m5C:0 52611 chr14 90651042 90651042 1 + C A LUAD 90651038 + 90651018 90651058 41 CCGCAATGCCAGAGAGGACTCTTGCGATCACGCAGGAACGT CCGCAATGCCAGAGAGGACTCTTGAGATCACGCAGGAACGT < 41bp 0.489152269690481 0.846431750744911 0.051652282 0.1123282 prediction 0.692863501489822 Functional Gain - KCNK13 ENSG00000152315 CDS Human protein_coding chr14:90651038 chr14:90651042 synonymous SNV . 0 25 hm5C_associated_SNPs_99466 0 0 0 0 0 exosome 0.500231643925916 0.500231643924211 0 0 hm5C_site_52611 DeepMRMD:0;iRNA_m5C:0 52612 chr3 133166219 133166219 1 + C A LUSC 133166215 + 133166195 133166235 41 TGCTGCAGACAGAAACTATCCAGGCCGGAGCAGATGACTTT TGCTGCAGACAGAAACTATCCAGGACGGAGCAGATGACTTT < 41bp 0.515208053956188 0.861591865225413 0.5077757 0.36177295 prediction 0.692767622538448 Functional Gain - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133166215 chr3:133166219 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_99467 0 0 0 0 2 exosome 0.500231639441932 0.500232838846056 0 2.3988082469284e-06 hm5C_site_52612 DeepMRMD:0;iRNA_m5C:2.3988082469284e-06 52613 chr16 67688485 67688485 1 + C A ESCA 67688481 + 67688461 67688501 41 GGGGCTGAGGGGGACACCAGCAGCCCTGACCCTGCCGGCAG GGGGCTGAGGGGGACACCAGCAGCACTGACCCTGCCGGCAG < 41bp 0.486753390144343 0.84634508232377 0.82956797 0.8511839 prediction 0.69269016464754 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67688481 chr16:67688485 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_99468 0 0 0 0 0 chromatin 0.500231643921092 0.500231643923103 0.0432318599999999 4.02100575058739e-12 hm5C_site_52613 DeepMRMD:0.0432318599999999;iRNA_m5C:4.02100575058739e-12 52614 chr17 48559685 48559685 1 + C A GBM 48559681 + 48559661 48559701 41 GTCCCTGGAGCGGGGCACCGCACTCTTCGCCCAGGTGCAGC GTCCCTGGAGCGGGGCACCGCACTATTCGCCCAGGTGCAGC < 41bp 0.473095409808141 0.846344879019255 0.04723835 0.067744434 prediction 0.692689758038509 Functional Gain - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48559681 chr17:48559685 synonymous SNV . 0 25 hm5C_associated_SNPs_99469 0 0 0 0 0 Ribosome 0.500231643921067 0.500231643873933 0 0 hm5C_site_52614 DeepMRMD:0;iRNA_m5C:0 52615 chr16 23392036 23392036 1 + C A LUSC 23392032 + 23392012 23392052 41 CCCAGTGAGCAGGCCCTGCCCATCCCAGGCACCCCGCCCCC CCCAGTGAGCAGGCCCTGCCCATCACAGGCACCCCGCCCCC < 41bp 0.512940687879861 0.859253662033103 0.070295036 0.043706656 prediction 0.692625948306484 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23392032 chr16:23392036 nonsynonymous SNV 0.839 4 25 hm5C_associated_SNPs_99470 0 0 0 0 0 exosome 0.500205542065691 0.500231643909662 0 5.22036879408994e-05 hm5C_site_52615 DeepMRMD:0;iRNA_m5C:5.22036879408994e-05 52616 chr18 8825067 8825067 1 + C A PRAD 8825063 + 8825043 8825083 41 CTGCGGAGCCACGTCCTCACCGAGCAGTCGGGGTTGCGCGT CTGCGGAGCCACGTCCTCACCGAGAAGTCGGGGTTGCGCGT < 41bp 0.482676530927565 0.846254144190618 0.18408999 0.3205725 prediction 0.692508288381236 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8825063 chr18:8825067 nonsynonymous SNV 0.431 0 25 hm5C_associated_SNPs_99471 0 0 0 0 0 Nucleus 0.500231719908098 0.500368864848067 0 0.000274289879936607 hm5C_site_52616 DeepMRMD:0;iRNA_m5C:0.000274289879936607 52617 chr1 224377867 224377867 1 + C A BLCA 224377863 + 224377843 224377883 41 CTTTACTTGGCCTGGGTTTGCACCCAATTTCTGGACATTTT CTTTACTTGGCCTGGGTTTGCACCAAATTTCTGGACATTTT < 41bp 0.482425379294971 0.846226982728269 0.21174386 0.18538779 prediction 0.692453965456538 Functional Gain - DEGS1 ENSG00000143753 CDS Human protein_coding chr1:224377863 chr1:224377867 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_99472 0 0 1 0 0 Ribosome 0.50023164389907 0.50023164392113 0 4.41207070878136e-11 hm5C_site_52617 DeepMRMD:0;iRNA_m5C:4.41207070878136e-11 52618 chr16 23197692 23197692 1 + C A UCEC 23197688 + 23197668 23197708 41 AAAGAGCTGATGCGGTGGTACTGCCTCAACACCAACACCCA AAAGAGCTGATGCGGTGGTACTGCATCAACACCAACACCCA < 41bp 0.525647494077674 0.871850703954532 0.18075585 0.22146171 prediction 0.692406419753715 Functional Gain - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23197688 chr16:23197692 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_99473 0 0 0 0 0 exosome 0.500231638133093 0.500231643921069 0 1.15759515306735e-08 hm5C_site_52618 DeepMRMD:0;iRNA_m5C:1.15759515306735e-08 52619 chr11 63141182 63141182 1 + C A LUAD 63141178 + 63141158 63141198 41 TGCCATTGTTGGCACCTGTGCAGCCTTGGCTCCCACCTTCC TGCCATTGTTGGCACCTGTGCAGCATTGGCTCCCACCTTCC < 41bp 0.484073827062458 0.846193870921998 0.30493146 0.15907735 prediction 0.692387741843997 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63141178 chr11:63141182 synonymous SNV . 0 25 hm5C_associated_SNPs_99474 0 0 0 0 2 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_52619 DeepMRMD:0;iRNA_m5C:0 52620 chr8 125580690 125580690 1 + G T SARC 125580694 - 125580674 125580714 41 TATTGGAAGAAACAGAAAAGCAGGCTGTCCGGAAGGCTTTG TATTGGAAGAAACAGAAAAGCAGGATGTCCGGAAGGCTTTG < 41bp 0.485676965126769 0.846142691007278 0.86371225 0.86062276 prediction 0.692285382014556 Functional Gain - MTSS1 ENSG00000170873 CDS Human protein_coding chr8:125580694 chr8:125580690 nonsynonymous SNV 0.859 4 25 hm5C_associated_SNPs_99475 0 0 1 0 2 insoluble cytoplasm 0.500231663070881 0.500231647539395 0 0 hm5C_site_52620 DeepMRMD:0;iRNA_m5C:0 52621 chr19 2917947 2917947 1 + C A rs142727006 2917943 + 2917923 2917963 41 TTAGAGAACATGTGAGAATTCACACGCAAGAGCAGCTCCAT TTAGAGAACATGTGAGAATTCACAAGCAAGAGCAGCTCCAT < 41bp 0.517063057575665 0.863201907579177 0.12177652 0.17168722 prediction 0.692277700007024 Functional Gain - ZNF57 ENSG00000171970 CDS Human protein_coding chr19:2917943 chr19:2917947 nonsynonymous SNV 0.009 2 25 hm5C_associated_SNPs_99476 0 0 1 0 0 nucleoplasm 0.500231643920694 0.500231643391415 0 0 hm5C_site_52621 DeepMRMD:0;iRNA_m5C:0 52622 chr2 202093741 202093741 1 + C A STAD 202093737 + 202093717 202093757 41 GCTAAACAGATCTCAGCAACCTCCCTGCCCACGGCCATCTC GCTAAACAGATCTCAGCAACCTCCATGCCCACGGCCATCTC < 41bp 0.509796563526099 0.855894023209192 0.2122463 0.95799863 prediction 0.692194919366186 Functional Gain - CASP10 ENSG00000003400 CDS Human protein_coding chr2:202093737 chr2:202093741 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_99477 0 0 0 0 1 Nucleus 0.500231643921239 0.500245818908612 0.91599726 2.83499747442129e-05 hm5C_site_52622 DeepMRMD:0.91599726;iRNA_m5C:2.83499747442129e-05 52623 chr5 177547371 177547371 1 + C A STAD 177547367 + 177547347 177547387 41 GCCCGGGCACAGCTGCTGCACGCCCTCAGCCTAGATGAGGG GCCCGGGCACAGCTGCTGCACGCCATCAGCCTAGATGAGGG < 41bp 0.49380596914771 0.845948111756642 0.039972156 0.05400464 prediction 0.691896223513284 Functional Gain - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177547367 chr5:177547371 nonsynonymous SNV 0.911 1 25 hm5C_associated_SNPs_99478 0 0 0 0 0 chromatin 0.500231643921092 0.500231667747539 0 4.76528940751564e-08 hm5C_site_52623 DeepMRMD:0;iRNA_m5C:4.76528940751564e-08 52624 chr1 158262412 158262412 1 + C A STAD 158262408 + 158262388 158262428 41 AGGCCAGAAGCCTGGCTGTCCAGTCGCCCCAGCCTTGGGTC AGGCCAGAAGCCTGGCTGTCCAGTAGCCCCAGCCTTGGGTC < 41bp 0.506409439851796 0.852313845094517 0.500596 0.50322396 prediction 0.691808810485443 Functional Gain - CD1C ENSG00000158481 CDS Human protein_coding chr1:158262408 chr1:158262412 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_99479 0 0 0 0 0 exosome 0.500232249350615 0.500231643911122 0.00525591999999997 0 hm5C_site_52624 DeepMRMD:0.00525591999999997;iRNA_m5C:0 52625 chr16 28997985 28997985 1 + C A UCEC 28997981 + 28997961 28998001 41 TGTGTCGTTACCCCCAGAACCAGCCTGTGAGGATGCGGATG TGTGTCGTTACCCCCAGAACCAGCATGTGAGGATGCGGATG < 41bp 0.521912406214102 0.86779758829528 0.16008195 0.28667438 prediction 0.691770364162354 Functional Gain - LAT ENSG00000213658 CDS Human protein_coding chr16:28997981 chr16:28997985 synonymous SNV . 0 25 hm5C_associated_SNPs_99480 0 0 1 0 3 Cytosol 0.500232088264284 0.500230921374316 0 0 hm5C_site_52625 DeepMRMD:0;iRNA_m5C:0 52626 chr2 198948628 198948628 1 + C A BLCA 198948624 + 198948604 198948644 41 GAAGAAAGTCCGGCCAAATTCTCGCATTTACAACCGTTTTT GAAGAAAGTCCGGCCAAATTCTCGAATTTACAACCGTTTTT < 41bp 0.512675652232553 0.858523420620817 0.41430834 0.90020216 prediction 0.691695536776529 Functional Gain - PLCL1 ENSG00000115896 CDS Human protein_coding chr2:198948624 chr2:198948628 synonymous SNV . 0 25 hm5C_associated_SNPs_99481 0 0 0 0 0 Cytosol 0.500231643921427 0.500231643921136 0.80040432 0 hm5C_site_52626 DeepMRMD:0.80040432;iRNA_m5C:0 52627 chr11 55032609 55032609 1 + C A LUAD 55032605 + 55032585 55032625 41 GATTGAAGAAGATGGCTTCCCTTGCCAGAAAAGCCAGTCTC GATTGAAGAAGATGGCTTCCCTTGACAGAAAAGCCAGTCTC < 41bp 0.489108281703173 0.845793778474328 0.0801107 0.095433205 prediction 0.691587556948656 Functional Gain - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55032605 chr11:55032609 nonsynonymous SNV 0.020 3 25 hm5C_associated_SNPs_99482 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0 0 hm5C_site_52627 DeepMRMD:0;iRNA_m5C:0 52628 chr15 74467991 74467991 1 + C A LUAD 74467987 + 74467967 74468007 41 CTGTGATGTGGACGGGCAGCCGGCCCCTCAGCTTCACTGGC CTGTGATGTGGACGGGCAGCCGGCACCTCAGCTTCACTGGC < 41bp 0.512124735306431 0.857891225554771 0.44071028 0.77679265 prediction 0.69153298049668 Functional Gain - ISLR ENSG00000129009 CDS Human protein_coding chr15:74467987 chr15:74467991 synonymous SNV . 0 25 hm5C_associated_SNPs_99483 0 0 0 0 0 Cytosol 0.500231643922349 0.500231642910301 0.5535853 0 hm5C_site_52628 DeepMRMD:0.5535853;iRNA_m5C:0 52629 chr22 31008891 31008891 1 + C A LUSC 31008887 + 31008867 31008907 41 TTCAGCGAGGATGACGGTGACTGCCAGGGCAAGCCTTCCAT TTCAGCGAGGATGACGGTGACTGCAAGGGCAAGCCTTCCAT < 41bp 0.536549977771903 0.882255090463797 0.052906543 0.4317054 prediction 0.691410225383788 Functional Gain - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31008887 chr22:31008891 nonsynonymous SNV 0.034 0 25 hm5C_associated_SNPs_99484 0 0 0 0 2 Endoplasmic reticulum 0.500231643940207 0.500231643921429 0 0 hm5C_site_52629 DeepMRMD:0;iRNA_m5C:0 52630 chr3 183756296 183756296 1 + C A LUAD 183756292 + 183756272 183756312 41 ACGTGGCCACCACCCAGCCCCTACCTCTGCCTCGGTGGCTC ACGTGGCCACCACCCAGCCCCTACATCTGCCTCGGTGGCTC < 41bp 0.456327697865764 0.845686330343374 0.02924937 0.55002904 prediction 0.691372660686747 Functional Gain - HTR3D ENSG00000186090 CDS Human protein_coding chr3:183756292 chr3:183756296 nonsynonymous SNV 0.006 4 25 hm5C_associated_SNPs_99485 0 0 0 0 1 unknown 0.500231643921576 0.500231645914774 0.10005808 3.98639588006233e-09 hm5C_site_52630 DeepMRMD:0.10005808;iRNA_m5C:3.98639588006233e-09 52631 chr1 78001620 78001620 1 + C A STAD 78001616 + 78001596 78001636 41 TCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACACCACC TCCAAAGGAGCCGGAGCAGCCTGCATGTGGACGACACCACC < 41bp 0.52349646654831 0.869153003000955 0.16297087 0.43888533 prediction 0.691313072905289 Functional Gain - AK5 ENSG00000154027 CDS Human protein_coding chr1:78001616 chr1:78001620 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99486 0 0 0 0 1 Nucleus 0.500231643921648 0.500231659194748 0 3.05462009020374e-08 hm5C_site_52631 DeepMRMD:0;iRNA_m5C:3.05462009020374e-08 52632 chrX 99919896 99919896 1 + C A rs150552508 99919892 + 99919872 99919912 41 TACCACCTGGAAGGTGATCGCAGCCGAATCTGCATGGAAGA TACCACCTGGAAGGTGATCGCAGCAGAATCTGCATGGAAGA < 41bp 0.518095697029051 0.863648780767814 0.47422627 0.67367876 prediction 0.691106167477526 Functional Gain - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99919892 chrX:99919896 synonymous SNV . 0 25 hm5C_associated_SNPs_99487 2 0 0 0 1 nucleus 0.500231643921092 0.500231643921093 0.34735752 2.22044604925031e-16 hm5C_site_52632 DeepMRMD:0.34735752;iRNA_m5C:2.22044604925031e-16 not specified not specified 52633 chr6 133783575 133783575 1 + C A LUSC 133783571 + 133783551 133783591 41 GCAGCAGCCAGCCGTCTACACAGCCTACTCACAGACAGGAC GCAGCAGCCAGCCGTCTACACAGCATACTCACAGACAGGAC < 41bp 0.476892980527633 0.845492902202215 0.1253646 0.112921864 prediction 0.690985804404429 Functional Gain - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783571 chr6:133783575 synonymous SNV . 0 25 hm5C_associated_SNPs_99488 0 0 0 0 1 Cytosol 0.500231643927967 0.500231644415234 0 9.74533564956914e-10 hm5C_site_52633 DeepMRMD:0;iRNA_m5C:9.74533564956914e-10 52634 chr11 59211014 59211014 1 + C A rs150073749 59211010 + 59210990 59211030 41 CTCCTGACTGCTATGGCATACGACCGATATGCAGCCATCTC CTCCTGACTGCTATGGCATACGACAGATATGCAGCCATCTC < 41bp 0.494934316358221 0.845453418969964 0.0677121 0.18134311 prediction 0.690906837939928 Functional Gain - OR5A1 ENSG00000172320 CDS Human protein_coding chr11:59211010 chr11:59211014 synonymous SNV . 0 25 hm5C_associated_SNPs_99489 0 0 0 0 0 unknown 0.50023164089389 0.500231643952894 0 6.11800721195266e-09 hm5C_site_52634 DeepMRMD:0;iRNA_m5C:6.11800721195266e-09 52635 chr19 54653390 54653390 1 + C A UCEC 54653386 + 54653366 54653406 41 GACCCAGCCTCCTGGTGCCACTGCCTGTGAATCCTCCCAGC GACCCAGCCTCCTGGTGCCACTGCATGTGAATCCTCCCAGC < 41bp 0.462041841609673 0.84544665125167 0.13278154 0.12313968 prediction 0.690893302503341 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54653386 chr19:54653390 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_99490 0 0 1 0 1 Ribosome 0.500231643921092 0.500231567846834 0 0 hm5C_site_52635 DeepMRMD:0;iRNA_m5C:0 52636 chr14 60473216 60473216 1 + C A UCEC 60473212 + 60473192 60473232 41 GATAACATGCTTCATCTTCACTCGCTTTCTCTTGAGAACAA GATAACATGCTTCATCTTCACTCGATTTCTCTTGAGAACAA < 41bp 0.482967073692003 0.845429365285597 0.09031114 0.2889368 prediction 0.690858730571195 Functional Gain - LRRC9 ENSG00000131951 CDS Human protein_coding chr14:60473212 chr14:60473216 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_99491 0 0 0 0 0 exosome 0.500231643915124 0.500231642237087 0 0 hm5C_site_52636 DeepMRMD:0;iRNA_m5C:0 52637 chr2 79254235 79254235 1 + C A LUAD 79254231 + 79254211 79254251 41 GCTGAGGGATCCTTCGTGTCCTCCCTGGTGAGGAGCATTAG GCTGAGGGATCCTTCGTGTCCTCCATGGTGAGGAGCATTAG < 41bp 0.539282175439367 0.884565097796079 0.08163983 0.9270375 prediction 0.690565844713424 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254231 chr2:79254235 nonsynonymous SNV 0.022 0 25 hm5C_associated_SNPs_99492 0 0 0 0 2 unknown 0.500231643921092 0.500231643921054 0.854075 0 hm5C_site_52637 DeepMRMD:0.854075;iRNA_m5C:0 52638 chr4 110754440 110754440 1 + C A STAD 110754436 + 110754416 110754456 41 CATTGGCTATCCCATGTCTGCTGCCTCAGATCTGTATGGAA CATTGGCTATCCCATGTCTGCTGCATCAGATCTGTATGGAA < 41bp 0.474191828433652 0.845281688591983 0.058793217 0.07250011 prediction 0.690563377183966 Functional Gain - RRH ENSG00000180245 CDS Human protein_coding chr4:110754436 chr4:110754440 synonymous SNV . 0 25 hm5C_associated_SNPs_99493 0 0 1 0 1 nucleoplasm 0.500231643921092 0.500231643921093 0 4.44089209850063e-16 hm5C_site_52638 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 52639 chr17 34091130 34091130 1 + C A rs140052043 34091126 + 34091106 34091146 41 TCGGAGGACGAGGACGAGGACAACCAGAGGCCGCTGGAGGA TCGGAGGACGAGGACGAGGACAACAAGAGGCCGCTGGAGGA < 41bp 0.489414200045171 0.845223066283854 0.23421332 0.34111798 prediction 0.690446132567708 Functional Gain - C17orf50 ENSG00000154768 CDS Human other chr17:34091126 chr17:34091130 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99494 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52639 DeepMRMD:0;iRNA_m5C:0 52640 chr1 221053223 221053223 1 + C A STAD 221053219 + 221053199 221053239 41 GATGTTCGCAGCCGGGCTGGCTCCCTTCTACGCCTCCAACT GATGTTCGCAGCCGGGCTGGCTCCATTCTACGCCTCCAACT < 41bp 0.516842808179627 0.862056277842531 0.010954827 0.21802136 prediction 0.690426939325808 Functional Gain - HLX ENSG00000136630 CDS Human protein_coding chr1:221053219 chr1:221053223 synonymous SNV . 0 25 hm5C_associated_SNPs_99495 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52640 DeepMRMD:0;iRNA_m5C:0 52641 chr16 22926542 22926542 1 + C A OV 22926538 + 22926518 22926558 41 GCCATCCGCATCGGCATGTACGTGCTGCACCTGGAGAGCTG GCCATCCGCATCGGCATGTACGTGATGCACCTGGAGAGCTG < 41bp 0.506517424916829 0.851717872470093 0.20990637 0.36466703 prediction 0.690400895106526 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926538 chr16:22926542 nonsynonymous SNV 0.959 1 25 hm5C_associated_SNPs_99496 0 0 0 1 0 exosome 0.500231693103699 0.500231689011631 0 0 hm5C_site_52641 DeepMRMD:0;iRNA_m5C:0 52642 chr14 101200700 101200700 1 + C A LUSC 101200696 + 101200676 101200716 41 GGCTTCATCGACAAGACCTGCAGCCGCCCGGTGACCAACTG GGCTTCATCGACAAGACCTGCAGCAGCCCGGTGACCAACTG < 41bp 0.512773497364025 0.857973797212406 0.19563219 0.2604733 prediction 0.690400599696763 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101200696 chr14:101200700 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99497 0 0 1 0 1 Endoplasmic reticulum 0.500231649064026 0.50023162684792 0 0 hm5C_site_52642 DeepMRMD:0;iRNA_m5C:0 52643 chrX 149013264 149013264 1 + C A LUAD 149013260 + 149013240 149013280 41 CTGAGGGTGCCTCCTCTTCCCTGACTGTCACCGACAGCACT CTGAGGGTGCCTCCTCTTCCCTGAATGTCACCGACAGCACT < 41bp 0.508944276347606 0.854133312151282 0.050221533 0.1132527 prediction 0.690378071607352 Functional Gain - MAGEA8 ENSG00000156009 CDS Human protein_coding chrX:149013260 chrX:149013264 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_99498 0 0 0 0 0 exosome 0.500231605968214 0.500231641492751 0 7.10490739574965e-08 hm5C_site_52643 DeepMRMD:0;iRNA_m5C:7.10490739574965e-08 52644 chr2 223918080 223918080 1 + C A rs10189762 223918076 + 223918056 223918096 41 TCCTAGCACCCCCGGGACCCCTGCCGGTGGCTCCATCAGCC TCCTAGCACCCCCGGGACCCCTGCAGGTGGCTCCATCAGCC < 41bp 0.494595932774813 0.845059727305036 0.027116328 0.118319035 prediction 0.690119454610071 Functional Gain - KCNE4 ENSG00000152049 UTR3 Human protein_coding chr2:223918076 chr2:223918080 . . 0 25 hm5C_associated_SNPs_99499 0 0 0 0 0 Nucleus 0.500231643816984 0.500231643922379 0 2.10789607990591e-10 hm5C_site_52644 DeepMRMD:0;iRNA_m5C:2.10789607990591e-10 52645 chr1 155014027 155014027 1 + C A OV 155014023 + 155014003 155014043 41 GCAGGGAGGCCCGCCAAGCCCCAGCCTCCAGACTCCACCTG GCAGGGAGGCCCGCCAAGCCCCAGACTCCAGACTCCACCTG < 41bp 0.524516493936571 0.869531107975909 0.0144613385 0.03286785 prediction 0.690029228078676 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155014023 chr1:155014027 nonsynonymous SNV 0.031 0 25 hm5C_associated_SNPs_99500 0 0 0 0 1 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_52645 DeepMRMD:0;iRNA_m5C:0 52646 chr7 141424954 141424954 1 + C A rs45535636 141424950 + 141424930 141424970 41 TATCCGCAAGGGTAACTTTCCGGACGTTCCTCAGGAGCTCT TATCCGCAAGGGTAACTTTCCGGAAGTTCCTCAGGAGCTCT < 41bp 0.511279488795142 0.856154852903761 0.80584514 0.6924802 prediction 0.689750728217239 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141424950 chr7:141424954 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_99501 0 0 0 0 1 exosome 0.500231644045737 0.500231643921095 0 0 hm5C_site_52646 DeepMRMD:0;iRNA_m5C:0 52647 chr19 36637199 36637199 1 + C A OV 36637195 + 36637175 36637215 41 AACTTCATCAGCTGCTTGGTCAGGCTGGACGCCATGTTCCG AACTTCATCAGCTGCTTGGTCAGGATGGACGCCATGTTCCG < 41bp 0.487863847934759 0.844848120157063 0.39271852 0.35110095 prediction 0.689696240314127 Functional Gain - CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36637195 chr19:36637199 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99502 0 0 1 0 1 Ribosome 0.500231648379141 0.500237619975038 0 1.19431917939838e-05 hm5C_site_52647 DeepMRMD:0;iRNA_m5C:1.19431917939838e-05 52648 chr22 25623935 25623935 1 + C A SKCM 25623931 + 25623911 25623951 41 CGAAGGACGGACTCCCTCAGCTCCCTGAGGCCCATCAAAGT CGAAGGACGGACTCCCTCAGCTCCATGAGGCCCATCAAAGT < 41bp 0.443508952935166 0.84484786792352 0.37617162 0.92238903 prediction 0.689695735847039 Functional Gain - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25623931 chr22:25623935 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_99503 0 0 0 0 1 exosome 0.500231643913803 0.500231644045076 0.84477806 2.62545984952567e-10 hm5C_site_52648 DeepMRMD:0.84477806;iRNA_m5C:2.62545984952567e-10 52649 chr1 28176927 28176927 1 + C A rs191813798 28176923 + 28176903 28176943 41 ATATGCAAAAGAGGCTTGGCCAGGCAAGAAGCCCACACCTT ATATGCAAAAGAGGCTTGGCCAGGAAAGAAGCCCACACCTT < 41bp 0.500776816234073 0.845624627912945 0.7876872 0.55981666 prediction 0.689695623357744 Functional Gain - PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28176923 chr1:28176927 synonymous SNV . 0 25 hm5C_associated_SNPs_99504 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921127 0 6.90558721316847e-14 hm5C_site_52649 DeepMRMD:0;iRNA_m5C:6.90558721316847e-14 52650 chr22 29654850 29654850 1 + C A LUAD 29654846 + 29654826 29654866 41 GCGGGCCCTGCCGGCACAGGCACCCCCAGCCTCCTTCGGGG GCGGGCCCTGCCGGCACAGGCACCACCAGCCTCCTTCGGGG < 41bp 0.510346026802026 0.855160806964292 0.5352342 0.50971085 prediction 0.689629560324532 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29654846 chr22:29654850 nonsynonymous SNV 0.953 4 25 hm5C_associated_SNPs_99505 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_52650 DeepMRMD:0;iRNA_m5C:0 52651 chr1 43738839 43738839 1 + C A UCEC 43738835 + 43738815 43738855 41 CTCGGCCGCTGGCCGCCATGCTGTCTGTGGGCATTGCTCTG CTCGGCCGCTGGCCGCCATGCTGTATGTGGGCATTGCTCTG < 41bp 0.482247288044807 0.84479558483883 0.28879765 0.45571434 prediction 0.689591169677659 Functional Gain - TMEM125 ENSG00000179178 CDS Human protein_coding chr1:43738835 chr1:43738839 nonsynonymous SNV 0.772 1 25 hm5C_associated_SNPs_99506 0 0 0 0 0 Ribosome 0.500232196867228 0.500231652342493 0 0 hm5C_site_52651 DeepMRMD:0;iRNA_m5C:0 52652 chr1 17265571 17265571 1 + C A LUAD 17265567 + 17265547 17265587 41 ACCCCGCCGAGGCCCCTCCCCGGCCTGCTCAGACTCCTCCA ACCCCGCCGAGGCCCCTCCCCGGCATGCTCAGACTCCTCCA < 41bp 0.510169776440444 0.854839580226019 0.606144 0.39870596 prediction 0.68933960757115 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17265567 chr1:17265571 synonymous SNV . 0 25 hm5C_associated_SNPs_99507 0 0 0 0 1 chromatin 0.500231675705848 0.500231954460295 0 5.57508895049352e-07 hm5C_site_52652 DeepMRMD:0;iRNA_m5C:5.57508895049352e-07 52653 chr5 3600253 3600253 1 + C A COAD 3600249 + 3600229 3600269 41 CTCCTTCCTGGGCGTTGGCGCTCCCCACGCCGCGCCCCATG CTCCTTCCTGGGCGTTGGCGCTCCACACGCCGCGCCCCATG < 41bp 0.478724672729432 0.844630733562426 0.19874075 0.9491626 prediction 0.689261467124852 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600249 chr5:3600253 synonymous SNV . 0 25 hm5C_associated_SNPs_99508 0 0 0 0 0 exosome 0.500231643921083 0.500231643921093 0.8983252 1.84297022087776e-14 hm5C_site_52653 DeepMRMD:0.8983252;iRNA_m5C:1.84297022087776e-14 52654 chr3 122514279 122514279 1 + C A LUSC 122514275 + 122514255 122514295 41 GGGTCCCATCCAGAACTCGGCGCGCCAGGCCTACGGCTTCT GGGTCCCATCCAGAACTCGGCGCGACAGGCCTACGGCTTCT < 41bp 0.50465061924582 0.849258153270677 0.19764283 0.2285994 prediction 0.689215068049713 Functional Gain - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122514275 chr3:122514279 synonymous SNV . 0 25 hm5C_associated_SNPs_99509 0 0 0 0 0 Endoplasmic reticulum 0.500232790178379 0.500231643942885 0 0 hm5C_site_52654 DeepMRMD:0;iRNA_m5C:0 52655 chr1 28862784 28862784 1 + C A rs182979681 28862780 + 28862760 28862800 41 GGCCTTTCCCCCAGGAACTCCGGGCACAGAATCTTGCTTCA GGCCTTTCCCCCAGGAACTCCGGGAACAGAATCTTGCTTCA < 41bp 0.472557892710426 0.844604881568809 0.76695216 0.8861176 prediction 0.689209763137617 Functional Gain - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862780 chr1:28862784 synonymous SNV . 0 25 hm5C_associated_SNPs_99510 0 0 1 0 1 Ribosome 0.50023164392108 0.500231643921092 0.23833088 2.42028619368284e-14 hm5C_site_52655 DeepMRMD:0.23833088;iRNA_m5C:2.42028619368284e-14 52656 chr1 240370728 240370728 1 + C A LUAD 240370724 + 240370704 240370744 41 AGAGTCCTCCAGCTCCATGCCTGGCCTGGGCATGGTGCCTC AGAGTCCTCCAGCTCCATGCCTGGACTGGGCATGGTGCCTC < 41bp 0.493449842750159 0.844549489409481 0.058929652 0.08668825 prediction 0.689098978818961 Functional Gain - FMN2 ENSG00000155816 CDS Human protein_coding chr1:240370724 chr1:240370728 synonymous SNV . 0 25 hm5C_associated_SNPs_99511 0 0 0 0 0 Endoplasmic reticulum 0.500231643921146 0.500231643921093 0 0 hm5C_site_52656 DeepMRMD:0;iRNA_m5C:0 52657 chr12 58017834 58017834 1 + C A LUSC 58017830 + 58017810 58017850 41 TCCAGCATGCGCCAGGTGTTCTGCCAGATGCAGGAACTTCC TCCAGCATGCGCCAGGTGTTCTGCAAGATGCAGGAACTTCC < 41bp 0.445801206630887 0.844512535897429 0.15397376 0.14486447 prediction 0.689025071794859 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58017830 chr12:58017834 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99512 0 0 0 0 2 chromatin 0.500231643921091 0.500231670944064 0 5.40459463849174e-08 hm5C_site_52657 DeepMRMD:0;iRNA_m5C:5.40459463849174e-08 52658 chr16 67000757 67000757 1 + C A UCEC 67000753 + 67000733 67000773 41 GTCAACAACCATGAGTTCAGCTGGCTCATCCCCAGGGTGAG GTCAACAACCATGAGTTCAGCTGGATCATCCCCAGGGTGAG < 41bp 0.480145117676189 0.844434017747378 0.4213917 0.35161495 prediction 0.688868035494755 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:67000753 chr16:67000757 nonsynonymous SNV 0.022 0 25 hm5C_associated_SNPs_99513 0 0 1 0 0 nucleolus 0.500231643922973 0.500231643921121 0 0 hm5C_site_52658 DeepMRMD:0;iRNA_m5C:0 52659 chr2 177036368 177036368 1 + C A HNSC 177036364 + 177036344 177036384 41 ACTTCAACCGCTACTTGTGCCGGCCGCGCCGCGTGGAGATG ACTTCAACCGCTACTTGTGCCGGCAGCGCCGCGTGGAGATG < 41bp 0.48854288222453 0.844422273375987 0.46820766 0.8228525 prediction 0.688844546751974 Functional Gain - HOXD3 ENSG00000128652 CDS Human protein_coding chr2:177036364 chr2:177036368 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_99514 0 0 1 0 0 exosome 0.500231653375205 0.500231643481303 0.645705 0 hm5C_site_52659 DeepMRMD:0.645705;iRNA_m5C:0 52660 chr22 32215120 32215120 1 + C A THCA 32215116 + 32215096 32215136 41 TGTTCGACCTGGTGGATACACGCCCCAGAGAGCACTGATTA TGTTCGACCTGGTGGATACACGCCACAGAGAGCACTGATTA < 41bp 0.517219608709376 0.861608323382266 0.20483801 0.10521704 prediction 0.688777429345781 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32215116 chr22:32215120 synonymous SNV . 0 25 hm5C_associated_SNPs_99515 0 0 1 2 1 chromatin 0.500231641561804 0.500231675994299 0 6.88649888225257e-08 hm5C_site_52660 DeepMRMD:0;iRNA_m5C:6.88649888225257e-08 52661 chr7 150269621 150269621 1 + C A LUSC 150269617 + 150269597 150269637 41 AGTTTCATGATTCTCATATTCACCCGGAAAGATGACTTAGG AGTTTCATGATTCTCATATTCACCAGGAAAGATGACTTAGG < 41bp 0.473434850456586 0.844382435867347 0.03294617 0.056251556 prediction 0.688764871734694 Functional Gain - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150269617 chr7:150269621 synonymous SNV . 0 25 hm5C_associated_SNPs_99516 0 0 0 0 1 exosome 0.500231643921092 0.500231643917164 0 0 hm5C_site_52661 DeepMRMD:0;iRNA_m5C:0 52662 chr20 30408160 30408160 1 + C A rs121908108 30408156 + 30408136 30408176 41 CGGAGGGCAGTGCTGGGCCCCCGGCAGCCCTGCCCCAGCAG CGGAGGGCAGTGCTGGGCCCCCGGAAGCCCTGCCCCAGCAG < 41bp 0.509031429419302 0.853405909467193 0.5359737 0.8337058 prediction 0.688748960095781 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30408156 chr20:30408160 nonsynonymous SNV 0.353 3 25 hm5C_associated_SNPs_99517 3 0 0 0 0 exosome 0.500231643921093 0.50023164391163 0.5954642 0 hm5C_site_52662 DeepMRMD:0.5954642;iRNA_m5C:0 Cardiomyopathy, hypertrophic, midventricular, digenic Cardiomyopathy, hypertrophic, midventricular, digenic 52663 chr16 89704574 89704574 1 + T G LUAD 89704571 + 89704551 89704591 41 GGGCTTCCAGCCTCCATCGCCACTGGGGGCTCCTGCTGGCC GGGCTTCCAGCCTCCATCGCCACGGGGGGCTCCTGCTGGCC < 41bp 0.487926754784198 0.844228101395945 0.92386806 0.95496035 prediction 0.688456202791891 Functional Gain - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89704571 chr16:89704574 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_99518 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.06218458 0 hm5C_site_52663 DeepMRMD:0.06218458;iRNA_m5C:0 52664 chr7 110763825 110763825 1 + C A STAD 110763821 + 110763801 110763841 41 ATTCACCCCAATGCATTTTTCAGACTCCCCAAGCTGGAATC ATTCACCCCAATGCATTTTTCAGAATCCCCAAGCTGGAATC < 41bp 0.488950169764295 0.844219002550183 0.81140935 0.82865983 prediction 0.688438005100366 Functional Gain - LRRN3 ENSG00000173114 CDS Human protein_coding chr7:110763821 chr7:110763825 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99519 0 0 0 0 0 chromatin 0.500231643883871 0.500231643920634 0.0345009599999999 7.35265182072453e-11 hm5C_site_52664 DeepMRMD:0.0345009599999999;iRNA_m5C:7.35265182072453e-11 52665 chrX 86773080 86773080 1 + C A LUSC 86773076 + 86773056 86773096 41 AGCCACTCTCGGGACAGAAACGGACTGAAGAAAAGCAACAG AGCCACTCTCGGGACAGAAACGGAATGAAGAAAAGCAACAG < 41bp 0.509324149999827 0.853542495553382 0.7472341 0.7261117 prediction 0.688436691107111 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86773076 chrX:86773080 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_99520 0 0 0 0 0 chromatin 0.500231640642463 0.50023164392109 0 6.55725540532615e-09 hm5C_site_52665 DeepMRMD:0;iRNA_m5C:6.55725540532615e-09 52666 chr6 35754883 35754883 1 + C A PAAD 35754879 + 35754859 35754899 41 GCGGAGAAGGGGTCCGAGGGCAGTCTGTGTCAAACGCAGGT GCGGAGAAGGGGTCCGAGGGCAGTATGTGTCAAACGCAGGT < 41bp 0.502921180429384 0.847097896980136 0.31867743 0.39811918 prediction 0.688353433101505 Functional Gain - CLPSL1 ENSG00000204140 CDS Human protein_coding chr6:35754879 chr6:35754883 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_99521 0 0 0 0 1 unknown 0.500231643923926 0.500231643920451 0 0 hm5C_site_52666 DeepMRMD:0;iRNA_m5C:0 52667 chr1 159175698 159175698 1 + C A HNSC 159175694 + 159175674 159175714 41 TGCCATGCCTCCCTGGGCCACAGACTGGGTGCAGGCCAGGT TGCCATGCCTCCCTGGGCCACAGAATGGGTGCAGGCCAGGT < 41bp 0.516478563962607 0.860651909227031 0.3274681 0.5520569 prediction 0.688346690528849 Functional Gain - ACKR1 ENSG00000213088 CDS Human protein_coding chr1:159175694 chr1:159175698 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_99522 0 0 0 0 0 Endoplasmic reticulum 0.500231641422947 0.500231643921095 0.1041138 4.99629559946868e-09 hm5C_site_52667 DeepMRMD:0.1041138;iRNA_m5C:4.99629559946868e-09 52668 chr5 140627161 140627161 1 + C A rs150110192 140627157 + 140627137 140627177 41 ACGGCTTCTCTCAGCCCTACCTGCCGCTCCCAGAGGCGGCC ACGGCTTCTCTCAGCCCTACCTGCAGCTCCCAGAGGCGGCC < 41bp 0.494452606146598 0.844165186127206 0.16994816 0.3085416 prediction 0.688330372254412 Functional Gain - PCDHB15 ENSG00000113248 CDS Human protein_coding chr5:140627157 chr5:140627161 nonsynonymous SNV 0.060 1 25 hm5C_associated_SNPs_99523 0 0 0 0 0 exosome 0.500231643896837 0.500231643918927 0 4.41788827743039e-11 hm5C_site_52668 DeepMRMD:0;iRNA_m5C:4.41788827743039e-11 52669 chr2 113742602 113742602 1 + C A UCEC 113742598 + 113742578 113742618 41 ACTTGGGAAGTCATACAACACTGCCTTTGAATTAAATATAA ACTTGGGAAGTCATACAACACTGCATTTGAATTAAATATAA < 41bp 0.510012253601706 0.854155151220236 0.05270219 0.18802726 prediction 0.688285795237061 Functional Gain - IL36G ENSG00000136688 CDS Human protein_coding chr2:113742598 chr2:113742602 synonymous SNV . 0 25 hm5C_associated_SNPs_99524 0 0 0 0 0 exosome 0.500231603905546 0.500231694131923 0 1.80452754960925e-07 hm5C_site_52669 DeepMRMD:0;iRNA_m5C:1.80452754960925e-07 52670 chr17 12887912 12887912 1 + C A UCEC 12887908 + 12887888 12887928 41 TGGCCAGCCGGGGGCTATGGCAGACCAGTCCGCTGGCCAGC TGGCCAGCCGGGGGCTATGGCAGAACAGTCCGCTGGCCAGC < 41bp 0.49562074231181 0.844056570832541 0.9173059 0.8269512 prediction 0.688113141665082 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12887908 chr17:12887912 nonsynonymous SNV 0.100 0 25 hm5C_associated_SNPs_99525 0 0 0 0 1 Nucleus 0.5002316365701 0.500231646012938 0 1.88856761340617e-08 hm5C_site_52670 DeepMRMD:0;iRNA_m5C:1.88856761340617e-08 52671 chr10 133761150 133761150 1 + T G UCEC 133761147 + 133761127 133761167 41 ACATGATGACCAGAGACTACCTGTCGGTGAAGGTGTGGGAC ACATGATGACCAGAGACTACCTGGCGGTGAAGGTGTGGGAC < 41bp 0.506103261573152 0.850157614289299 0.047614425 0.40487415 prediction 0.688108705432294 Functional Gain - PPP2R2D ENSG00000175470 CDS Human protein_coding chr10:133761147 chr10:133761150 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_99526 0 0 1 0 0 chromatin 0.500231635001934 0.500231643921208 0 1.78385488602828e-08 hm5C_site_52671 DeepMRMD:0;iRNA_m5C:1.78385488602828e-08 52672 chr5 167919806 167919806 1 + C A GBM 167919802 + 167919782 167919822 41 TGCTAGTGACACCAAGTCAGCAGGCCAAGTTTGGGGACTAT TGCTAGTGACACCAAGTCAGCAGGACAAGTTTGGGGACTAT < 41bp 0.510306511822036 0.854352847869883 0.5520785 0.49553382 prediction 0.688092672095693 Functional Gain - RARS ENSG00000113643 CDS Human protein_coding chr5:167919802 chr5:167919806 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99527 0 0 1 0 1 Nucleus 0.50023163627913 0.500231643682395 0 1.48065300020761e-08 hm5C_site_52672 DeepMRMD:0;iRNA_m5C:1.48065300020761e-08 52673 chr11 4903911 4903911 1 + C A COAD 4903907 + 4903887 4903927 41 TCTATGTGCCACTGATCAGCCTCTCTTTGGCACACCGCCTC TCTATGTGCCACTGATCAGCCTCTATTTGGCACACCGCCTC < 41bp 0.506938373125599 0.850956006009026 0.043872923 0.2884841 prediction 0.688035265766854 Functional Gain - OR51T1 ENSG00000176900 CDS Human protein_coding chr11:4903907 chr11:4903911 nonsynonymous SNV 0.380 4 25 hm5C_associated_SNPs_99528 0 0 0 0 0 unknown 0.500232071799442 0.500231783827288 0 0 hm5C_site_52673 DeepMRMD:0;iRNA_m5C:0 52674 chr6 26468502 26468502 1 + C A rs143941468 26468498 + 26468478 26468518 41 GGGCAATACCGGGCCGTGTCCTCCCCTGATAGGATTCTCCC GGGCAATACCGGGCCGTGTCCTCCACTGATAGGATTCTCCC < 41bp 0.466773575239073 0.84399523732053 0.31182384 0.9283068 prediction 0.68799047464106 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26468498 chr6:26468502 nonsynonymous SNV 0.036 2 25 hm5C_associated_SNPs_99529 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921076 0.8566136 0 hm5C_site_52674 DeepMRMD:0.8566136;iRNA_m5C:0 52675 chr14 101200790 101200790 1 + C A LUAD 101200786 + 101200766 101200806 41 GTGAGCTACGAGTGTCTGTGCAAGCCCGAGTTCACAGGTCT GTGAGCTACGAGTGTCTGTGCAAGACCGAGTTCACAGGTCT < 41bp 0.494747186779205 0.843928940803112 0.54215217 0.71817124 prediction 0.687857881606225 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101200786 chr14:101200790 nonsynonymous SNV 0.975 2 25 hm5C_associated_SNPs_99530 0 0 1 0 0 Endoplasmic reticulum 0.500231099541816 0.500230887830093 0.35203814 0 hm5C_site_52675 DeepMRMD:0.35203814;iRNA_m5C:0 52676 chr11 61017418 61017418 1 + C A UCEC 61017414 + 61017394 61017434 41 GTCAGCTGCTCAGCCATCAGCAGCCTGCCCGACATCGTCTT GTCAGCTGCTCAGCCATCAGCAGCATGCCCGACATCGTCTT < 41bp 0.468974261071871 0.843920980678131 0.48502132 0.2946945 prediction 0.687841961356263 Functional Gain - PGA5 ENSG00000229183;ENSG00000256713 CDS Human other chr11:61017414 chr11:61017418 nonsynonymous SNV 0.662 1 25 hm5C_associated_SNPs_99531 0 0 0 0 2 exosome 0.500231683236466 0.500235016306818 0 6.6661407038815e-06 hm5C_site_52676 DeepMRMD:0;iRNA_m5C:6.6661407038815e-06 52677 chr9 5549468 5549468 1 + C A CESC 5549464 + 5549444 5549484 41 CGTCAGCGTTCCTGCCAACACCAGCCACTCCAGGACCCCTG CGTCAGCGTTCCTGCCAACACCAGACACTCCAGGACCCCTG < 41bp 0.478845366879012 0.843917362358305 0.20193115 0.61213315 prediction 0.687834724716609 Functional Gain - PDCD1LG2 ENSG00000197646 CDS Human protein_coding chr9:5549464 chr9:5549468 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_99532 0 0 0 0 0 exosome 0.500231643921092 0.500231643921098 0.2242663 1.15463194561016e-14 hm5C_site_52677 DeepMRMD:0.2242663;iRNA_m5C:1.15463194561016e-14 52678 chr3 169539956 169539956 1 + C A COAD 169539952 + 169539932 169539972 41 GTCCTCTACCTGGATAAGAACAACCTGAGGAGCCTGTGCCC GTCCTCTACCTGGATAAGAACAACATGAGGAGCCTGTGCCC < 41bp 0.478847021719032 0.843883709551082 0.30684122 0.19839883 prediction 0.687767419102165 Functional Gain - LRRIQ4 ENSG00000188306 CDS Human protein_coding chr3:169539952 chr3:169539956 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_99533 0 0 0 0 0 exosome 0.500231645021438 0.500231643921457 0 0 hm5C_site_52678 DeepMRMD:0;iRNA_m5C:0 52679 chr11 4903940 4903940 1 + C A LUAD 4903936 + 4903916 4903956 41 GCACACCGCCTCTTCCACTCCACCCCAAGGGTGCTCTGTAG GCACACCGCCTCTTCCACTCCACCACAAGGGTGCTCTGTAG < 41bp 0.481775520317049 0.843862378810791 0.026166081 0.024062008 prediction 0.687724757621581 Functional Gain - OR51T1 ENSG00000176900 CDS Human protein_coding chr11:4903936 chr11:4903940 nonsynonymous SNV 0.952 4 25 hm5C_associated_SNPs_99534 0 0 0 0 0 unknown 0.500231643921052 0.500232137304693 0 9.86767281441203e-07 hm5C_site_52679 DeepMRMD:0;iRNA_m5C:9.86767281441203e-07 52680 chr2 95537572 95537572 1 + C A rs4854235 95537568 + 95537548 95537588 41 AGACCCAGGCGCTGGCGCAGCGCACGCAGCAAGACTCCACG AGACCCAGGCGCTGGCGCAGCGCAAGCAGCAAGACTCCACG < 41bp 0.497262744125758 0.843835143217326 0.17463183 0.25066334 prediction 0.687670286434652 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95537568 chr2:95537572 nonsynonymous SNV 0.455 2 25 hm5C_associated_SNPs_99535 0 0 0 0 0 chromatin 0.500242418837369 0.500237449742964 0 0 hm5C_site_52680 DeepMRMD:0;iRNA_m5C:0 52681 chr9 135073751 135073751 1 + C A STAD 135073747 + 135073727 135073767 41 CGAGGAGTACTCGCGCTGGGCAGGCTCCAAGAAGGAGAAGC CGAGGAGTACTCGCGCTGGGCAGGATCCAAGAAGGAGAAGC < 41bp 0.486635609973276 0.843827674538833 0.7737591 0.7315625 prediction 0.687655349077665 Functional Gain - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135073747 chr9:135073751 synonymous SNV . 0 25 hm5C_associated_SNPs_99536 0 0 0 0 0 exosome 0.500231643784738 0.500231643915521 0 2.61566546200243e-10 hm5C_site_52681 DeepMRMD:0;iRNA_m5C:2.61566546200243e-10 52682 chr19 36207628 36207628 1 + T G SKCM 36207625 + 36207605 36207645 41 CGTCTCGGCCCTCGACCTCTCCCTGTTGTCCTTCTTCCTCC CGTCTCGGCCCTCGACCTCTCCCGGTTGTCCTTCTTCCTCC < 41bp 0.495496759509745 0.843824810975773 0.13443545 0.6569481 prediction 0.687649621951546 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207625 chr19:36207628 nonsynonymous SNV 0.517 0 24 hm5C_associated_SNPs_99537 0 0 0 0 0 nucleus 0.500231643921098 0.500231643921092 0.3138962 0 hm5C_site_52682 DeepMRMD:0.3138962;iRNA_m5C:0 52683 chr14 74824129 74824129 1 + C A LUSC 74824125 + 74824105 74824145 41 CGGCCCCGCCGCTGCGACCACGTGCCCTCCACGCTGCACAT CGGCCCCGCCGCTGCGACCACGTGACCTCCACGCTGCACAT < 41bp 0.492072097680374 0.843820210357698 0.37578788 0.73689705 prediction 0.687640420715396 Functional Gain - VRTN ENSG00000133980 CDS Human protein_coding chr14:74824125 chr14:74824129 nonsynonymous SNV 0.363 0 25 hm5C_associated_SNPs_99538 0 0 0 0 0 unknown 0.500245064321174 0.500277715506751 0.4737941 6.53023711529865e-05 hm5C_site_52683 DeepMRMD:0.4737941;iRNA_m5C:6.53023711529865e-05 52684 chr16 67876877 67876877 1 + C A UCEC 67876873 + 67876853 67876893 41 GTCCTCACCCTCTGCCTCCACTGCCCAGACTGCCCAGCTGC GTCCTCACCCTCTGCCTCCACTGCACAGACTGCCCAGCTGC < 41bp 0.477160863944613 0.843818501100195 0.0405474 0.059081256 prediction 0.68763700220039 Functional Gain - THAP11 ENSG00000168286 CDS Human protein_coding chr16:67876873 chr16:67876877 synonymous SNV . 0 25 hm5C_associated_SNPs_99539 0 0 1 0 0 Ribosome 0.500231596104873 0.50023164392079 0 9.56318333411588e-08 hm5C_site_52684 DeepMRMD:0;iRNA_m5C:9.56318333411588e-08 52685 chr1 1390852 1390852 1 + C A rs200476672 1390848 + 1390828 1390868 41 CTTCCCCTCCAGCAGGTCAGCCGGCGGCTCCTCAGTCGACC CTTCCCCTCCAGCAGGTCAGCCGGAGGCTCCTCAGTCGACC < 41bp 0.489078870851068 0.843817461085557 0.9150123 0.922186 prediction 0.687634922171114 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1390848 chr1:1390852 synonymous SNV . 0 25 hm5C_associated_SNPs_99540 0 0 0 0 1 Nucleus 0.500231643921091 0.500231643874084 0.0143473999999999 0 hm5C_site_52685 DeepMRMD:0.0143473999999999;iRNA_m5C:0 Systolic blood pressure 52686 chr5 177019627 177019627 1 + C A UCEC 177019623 + 177019603 177019643 41 AGCAGCGGGAGGAGTACCAGCCGGCCACCCCGGGGCTTGGC AGCAGCGGGAGGAGTACCAGCCGGACACCCCGGGGCTTGGC < 41bp 0.481947018619876 0.84380334575698 0.80121803 0.8182544 prediction 0.687606691513961 Functional Gain - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019623 chr5:177019627 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_99541 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.03407274 0 hm5C_site_52686 DeepMRMD:0.03407274;iRNA_m5C:0 52687 chrX 134683590 134683590 1 + C A LUAD 134683586 + 134683566 134683606 41 GATGGACTTATGGATTCATCCAGGCCAAGCAATTCATTTGC GATGGACTTATGGATTCATCCAGGACAAGCAATTCATTTGC < 41bp 0.492074685025587 0.8438009041627 0.45191354 0.2111063 prediction 0.6876018083254 Functional Gain - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134683586 chrX:134683590 nonsynonymous SNV 0.990 0 25 hm5C_associated_SNPs_99542 0 0 0 0 1 Cytosol 0.500231724716987 0.500233951764412 0 4.45409484961523e-06 hm5C_site_52687 DeepMRMD:0;iRNA_m5C:4.45409484961523e-06 52688 chr17 65052332 65052332 1 + C A UCEC 65052328 + 65052308 65052348 41 TCGCCCTCCTGCTGTTCTCCCTGCCTCGAATGCCCCGGAAC TCGCCCTCCTGCTGTTCTCCCTGCATCGAATGCCCCGGAAC < 41bp 0.487551037686351 0.843787191127213 0.52757275 0.47403002 prediction 0.687574382254425 Functional Gain - CACNG1 ENSG00000108878 CDS Human protein_coding chr17:65052328 chr17:65052332 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_99543 0 0 0 0 0 unknown 0.500231643671204 0.500231642824952 0 0 hm5C_site_52688 DeepMRMD:0;iRNA_m5C:0 52689 chr11 118499199 118499199 1 + C A STAD 118499195 + 118499175 118499215 41 TCTCTTACTGGGGCTTCACCCTGCCAGAGTCCCTGTGTCCA TCTCTTACTGGGGCTTCACCCTGCAAGAGTCCCTGTGTCCA < 41bp 0.51980895665612 0.863578487796086 0.19484332 0.3734924 prediction 0.687539062279931 Functional Gain - PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118499195 chr11:118499199 nonsynonymous SNV 0.741 1 25 hm5C_associated_SNPs_99544 0 0 1 0 0 Cytosol 0.500231643921092 0.50023164392084 0 0 hm5C_site_52689 DeepMRMD:0;iRNA_m5C:0 52690 chr1 50661397 50661397 1 + C A rs144250728 50661393 + 50661373 50661413 41 TCCAGCCAGGCCCTGCTCTCCCAGCTCTACCAGTCCCCCAA TCCAGCCAGGCCCTGCTCTCCCAGATCTACCAGTCCCCCAA < 41bp 0.515785381664047 0.859541737473648 0.55063 0.7767732 prediction 0.687512711619203 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50661393 chr1:50661397 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_99545 0 0 0 0 1 exosome 0.500231642764592 0.500231643931388 0.4522864 2.33359287449275e-09 hm5C_site_52690 DeepMRMD:0.4522864;iRNA_m5C:2.33359287449275e-09 52691 chr1 26355757 26355757 1 + C A rs116456758 26355753 + 26355733 26355773 41 GGCCACCGTCCCGAGGCTGCCTCGCGCTTCCTCCAAGCCCT GGCCACCGTCCCGAGGCTGCCTCGAGCTTCCTCCAAGCCCT < 41bp 0.537237494546997 0.880970075799242 0.11429903 0.48884663 prediction 0.68746516250449 Functional Gain - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26355753 chr1:26355757 nonsynonymous SNV 0.184 2 25 hm5C_associated_SNPs_99546 0 0 0 0 2 chromatin 0.500231645908708 0.500231643921081 0 0 hm5C_site_52691 DeepMRMD:0;iRNA_m5C:0 52692 chr12 55615682 55615682 1 + C A LUAD 55615678 + 55615658 55615698 41 ATGCTAAACCCCATCATCTACGGCCTGAGGAACAATGAAGT ATGCTAAACCCCATCATCTACGGCATGAGGAACAATGAAGT < 41bp 0.500313750934147 0.844019268774392 0.20764601 0.12773272 prediction 0.687411035680491 Functional Gain - OR10A7 ENSG00000179919 CDS Human protein_coding chr12:55615678 chr12:55615682 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_99547 0 0 0 0 0 unknown 0.500231643959333 0.500231643921094 0 0 hm5C_site_52692 DeepMRMD:0;iRNA_m5C:0 52693 chr22 45689190 45689190 1 + C A LGG 45689186 + 45689166 45689206 41 TTTGCTGGCGCCATTGCCCTCAGCCTCGTGTAAGTACCTGC TTTGCTGGCGCCATTGCCCTCAGCATCGTGTAAGTACCTGC < 41bp 0.476901231226412 0.843678482151813 0.3538819 0.3480846 prediction 0.687356964303626 Functional Gain - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45689186 chr22:45689190 nonsynonymous SNV 0.139 0 25 hm5C_associated_SNPs_99548 0 0 1 0 1 exosome 0.500231644342864 0.500231650239669 0 1.17936098664728e-08 hm5C_site_52693 DeepMRMD:0;iRNA_m5C:1.17936098664728e-08 Multiple complex diseases 52694 chr13 113973791 113973791 1 + C A CESC 113973787 + 113973767 113973807 41 CTCCACTGCACCTGCAGAGACACGCTGTGAACAAGACAGGC CTCCACTGCACCTGCAGAGACACGATGTGAACAAGACAGGC < 41bp 0.474340881364854 0.843677391404254 0.08400276 0.20387363 prediction 0.687354782808508 Functional Gain - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113973787 chr13:113973791 synonymous SNV . 0 25 hm5C_associated_SNPs_99549 0 0 1 0 1 Cytosol 0.500231614789773 0.500231638202525 0 4.68255025865005e-08 hm5C_site_52694 DeepMRMD:0;iRNA_m5C:4.68255025865005e-08 52695 chr4 188924573 188924573 1 + C A COAD 188924569 + 188924549 188924589 41 TAGGAAGTTGAGGAATAGAGCTGCCCTGAGAAAGCATCTCC TAGGAAGTTGAGGAATAGAGCTGCACTGAGAAAGCATCTCC < 41bp 0.52742057580464 0.871086376382255 0.23085696 0.2418606 prediction 0.68733160115523 Functional Gain - ZFP42 ENSG00000179059 CDS Human protein_coding chr4:188924569 chr4:188924573 synonymous SNV . 0 25 hm5C_associated_SNPs_99550 0 0 0 0 0 Nucleus 0.500231643921092 0.50023164391168 0 0 hm5C_site_52695 DeepMRMD:0;iRNA_m5C:0 52696 chr2 27373134 27373134 1 + C A LUAD 27373130 + 27373110 27373150 41 GTTGGACGTGCTGGTGCTCGCCGCCAGCTACATAGCCCACC GTTGGACGTGCTGGTGCTCGCCGCAAGCTACATAGCCCACC < 41bp 0.512793428673251 0.856459004847762 0.40189993 0.918026 prediction 0.687331152349023 Functional Gain - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373130 chr2:27373134 synonymous SNV . 0 25 hm5C_associated_SNPs_99551 0 0 0 0 1 exosome 0.500231643985132 0.500223575170012 0.836052 0 hm5C_site_52696 DeepMRMD:0.836052;iRNA_m5C:0 52697 chr19 16338459 16338459 1 + C A rs143380976 16338455 + 16338435 16338475 41 CCGCACCATCTCCTTCATCCCACCCGACGGCGAGTTCGAGC CCGCACCATCTCCTTCATCCCACCAGACGGCGAGTTCGAGC < 41bp 0.455425882909564 0.843647504101066 0.034637988 0.029158294 prediction 0.687295008202132 Functional Gain - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16338455 chr19:16338459 synonymous SNV . 0 25 hm5C_associated_SNPs_99552 0 0 1 0 1 Ribosome 0.5002320044921 0.500231638809132 0 0 hm5C_site_52697 DeepMRMD:0;iRNA_m5C:0 52698 chr6 52268714 52268714 1 + T G ESCA 52268711 + 52268691 52268731 41 CTGTGGCACACCGTGTGGCGCTCTGTCACCTGGCTGGCTGC CTGTGGCACACCGTGTGGCGCTCGGTCACCTGGCTGGCTGC < 41bp 0.510834634002029 0.854473112171689 0.06790325 0.2903301 prediction 0.687276956339321 Functional Gain - PAQR8 ENSG00000170915 CDS Human protein_coding chr6:52268711 chr6:52268714 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_99553 0 0 1 0 0 Ribosome 0.500231638500568 0.500231643921117 0 1.08410993515662e-08 hm5C_site_52698 DeepMRMD:0;iRNA_m5C:1.08410993515662e-08 52699 chr17 61613156 61613156 1 + C A LUSC 61613152 + 61613132 61613172 41 TTCTTGCTCATGTGCACCTTCGCGCTCATAGCGCACTGGCT TTCTTGCTCATGTGCACCTTCGCGATCATAGCGCACTGGCT < 41bp 0.461386154007934 0.843616112127826 0.55783564 0.3955868 prediction 0.687232224255651 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61613152 chr17:61613156 nonsynonymous SNV 0.924 5 25 hm5C_associated_SNPs_99554 0 0 1 0 1 unknown 0.500231640443087 0.500231643920624 0 6.95507473835733e-09 hm5C_site_52699 DeepMRMD:0;iRNA_m5C:6.95507473835733e-09 52700 chr15 100252747 100252747 1 + C A KIRC 100252743 + 100252723 100252763 41 AGCAGCAGCAGCAGCAGCAGCCGCCGCCACCACCGCAGCCC AGCAGCAGCAGCAGCAGCAGCCGCAGCCACCACCGCAGCCC < 41bp 0.500030440038332 0.843623302891811 0.38871688 0.2739464 prediction 0.687185725706958 Functional Gain - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100252743 chr15:100252747 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_99555 0 0 0 0 0 Endoplasmic reticulum 0.500231643738822 0.500231645487113 0 3.49658169085387e-09 hm5C_site_52700 DeepMRMD:0;iRNA_m5C:3.49658169085387e-09 52701 chr11 6220605 6220605 1 + C A rs138929210 6220601 + 6220581 6220621 41 CCCTGCTGGGCAATGGAGCACTGCCGGCAGTGGTGTGGATA CCCTGCTGGGCAATGGAGCACTGCAGGCAGTGGTGTGGATA < 41bp 0.506086904683429 0.849679360761155 0.33308566 0.34557867 prediction 0.687184912155454 Functional Gain - OR52W1 ENSG00000175485 CDS Human protein_coding chr11:6220601 chr11:6220605 nonsynonymous SNV 0.123 1 25 hm5C_associated_SNPs_99556 0 0 0 0 0 unknown 0.500231643921114 0.500231643921092 0 0 hm5C_site_52701 DeepMRMD:0;iRNA_m5C:0 52702 chr19 47844851 47844851 1 + C A LUSC 47844847 + 47844827 47844867 41 TGTGGCGGCCCCGAACTCCGCACTCCTGGCCAGGGCCCTGC TGTGGCGGCCCCGAACTCCGCACTACTGGCCAGGGCCCTGC < 41bp 0.489452561881528 0.8435683431432 0.21017417 0.10973787 prediction 0.687136686286399 Functional Gain - C5AR2 ENSG00000134830 CDS Human protein_coding chr19:47844847 chr19:47844851 synonymous SNV . 0 25 hm5C_associated_SNPs_99557 0 0 0 0 0 exosome 0.500231643925981 0.500231643921092 0 0 hm5C_site_52702 DeepMRMD:0;iRNA_m5C:0 52703 chr16 89985918 89985918 1 + C A rs1805006 89985914 + 89985894 89985934 41 CATCTGCTGCCTGGCCTTGTCGGACCTGCTGGTGAGCGGGA CATCTGCTGCCTGGCCTTGTCGGAACTGCTGGTGAGCGGGA < 41bp 0.489021952370521 0.843498566753344 0.31993443 0.66173285 prediction 0.686997133506688 Functional Gain - MC1R ENSG00000198211;ENSG00000258839 CDS Human other chr16:89985914 chr16:89985918 nonsynonymous SNV 0.816 4 25 hm5C_associated_SNPs_99558 3 1 1 0 0 Endoplasmic reticulum 0.500231643921065 0.500231643921092 0.3234657 5.50670620214078e-14 hm5C_site_52703 DeepMRMD:0.3234657;iRNA_m5C:5.50670620214078e-14 Cutaneous malignant melanoma 5 Cutaneous malignant melanoma 5 52704 chr15 40675159 40675159 1 + C A LUAD 40675155 + 40675135 40675175 41 GTTTCTATTTGAAACCCAGGCGGCCGACTTAGCCGGTGGCA GTTTCTATTTGAAACCCAGGCGGCAGACTTAGCCGGTGGCA < 41bp 0.515107239933333 0.85860433303178 0.6756644 0.8047209 prediction 0.686994186196894 Functional Gain - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40675155 chr15:40675159 synonymous SNV . 0 25 hm5C_associated_SNPs_99559 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921811 0.258113 1.43640654926003e-12 hm5C_site_52704 DeepMRMD:0.258113;iRNA_m5C:1.43640654926003e-12 52705 chr1 186276832 186276832 1 + C A LUAD 186276828 + 186276808 186276848 41 CCTGAGGAGCCCACACCCACCACCCCTGAGGAGCCTGCTCC CCTGAGGAGCCCACACCCACCACCACTGAGGAGCCTGCTCC < 41bp 0.517640672433449 0.86100708959842 0.08422789 0.06304267 prediction 0.686732834329941 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276828 chr1:186276832 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_99560 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643921093 0 1.11022302462516e-15 hm5C_site_52705 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 52706 chr11 126146096 126146096 1 + C A STAD 126146092 + 126146072 126146112 41 GCACCCTGCAGGGCACCAAGCTACCTGTGGAGCCGAGGAAA GCACCCTGCAGGGCACCAAGCTACATGTGGAGCCGAGGAAA < 41bp 0.541985045280327 0.885301213710026 0.29188487 0.62017363 prediction 0.686632336859399 Functional Gain - FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126146092 chr11:126146096 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_99561 0 0 1 0 1 Ribosome 0.500231643921092 0.500231611416457 0.24034726 0 hm5C_site_52706 DeepMRMD:0.24034726;iRNA_m5C:0 52707 chr2 241570064 241570064 1 + C A UCEC 241570060 + 241570040 241570080 41 TGGTGTTCGTGGTCTGCTTCCTGCCCCTGCACGTGGGGCTG TGGTGTTCGTGGTCTGCTTCCTGCACCTGCACGTGGGGCTG < 41bp 0.48270479015991 0.843311937745057 0.26251042 0.3651655 prediction 0.686623875490113 Functional Gain - GPR35 ENSG00000178623 CDS Human protein_coding chr2:241570060 chr2:241570064 nonsynonymous SNV 0.611 4 25 hm5C_associated_SNPs_99562 0 0 0 0 0 Ribosome 0.500231643627499 0.500235401931868 0 7.5166087367684e-06 hm5C_site_52707 DeepMRMD:0;iRNA_m5C:7.5166087367684e-06 52708 chr7 150267070 150267070 1 + C A SARC 150267066 + 150267046 150267086 41 TGGTGAGAGGGCATTCAGTGCTCCCCAGACCAGGCTGCAGG TGGTGAGAGGGCATTCAGTGCTCCACAGACCAGGCTGCAGG < 41bp 0.473158673918606 0.843269104274812 0.13173604 0.7977843 prediction 0.686538208549623 Functional Gain - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267066 chr7:150267070 synonymous SNV . 0 25 hm5C_associated_SNPs_99563 0 0 0 0 2 exosome 0.500231643997629 0.500232136800199 0.5955686 9.8560513972501e-07 hm5C_site_52708 DeepMRMD:0.5955686;iRNA_m5C:9.8560513972501e-07 52709 chr19 58016146 58016146 1 + C A OV 58016142 + 58016122 58016162 41 TGCTGGAGAACTTTACACTTCTGGCCTCTCTGGGTAAGGTT TGCTGGAGAACTTTACACTTCTGGACTCTCTGGGTAAGGTT < 41bp 0.480069997929988 0.843268815729243 0.23844871 0.31407154 prediction 0.686537631458486 Functional Gain - ZNF773 ENSG00000152439 CDS Human protein_coding chr19:58016142 chr19:58016146 nonsynonymous SNV 0.812 3 25 hm5C_associated_SNPs_99564 0 0 0 0 1 exosome 0.500233290469139 0.500231750551051 0 0 hm5C_site_52709 DeepMRMD:0;iRNA_m5C:0 52710 chr20 21695213 21695213 1 + C A LUAD 21695209 + 21695189 21695229 41 TCGACCTCCTAGGGGCAGCTCTCCCCGGACCCGAGCCCGGA TCGACCTCCTAGGGGCAGCTCTCCACGGACCCGAGCCCGGA < 41bp 0.526891401383044 0.870127510179894 0.51084363 0.95675325 prediction 0.686472217593699 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21695209 chr20:21695213 synonymous SNV . 0 25 hm5C_associated_SNPs_99565 0 0 0 0 1 unknown 0.500231643920492 0.500231643921095 0.89181924 1.20570220474292e-12 hm5C_site_52710 DeepMRMD:0.89181924;iRNA_m5C:1.20570220474292e-12 52711 chr9 27169605 27169605 1 + C A LUAD 27169601 + 27169581 27169621 41 AGGAGGAAACCTCTTCACCTCGGCCTTCACCAGGCTGATAG AGGAGGAAACCTCTTCACCTCGGCATTCACCAGGCTGATAG < 41bp 0.52870355725036 0.871927945429716 0.65341 0.5460899 prediction 0.686448776358711 Functional Gain - TEK ENSG00000120156 CDS Human protein_coding chr9:27169601 chr9:27169605 synonymous SNV . 0 25 hm5C_associated_SNPs_99566 0 0 0 0 1 nucleoplasm 0.500231643921095 0.500231643921094 0 0 hm5C_site_52711 DeepMRMD:0;iRNA_m5C:0 52712 chr21 40871822 40871822 1 + C A SKCM 40871818 + 40871798 40871838 41 GCAGTGAAGATGTGGGCAACCTCCCTGAAGCCCAGGAGAAG GCAGTGAAGATGTGGGCAACCTCCATGAAGCCCAGGAGAAG < 41bp 0.54363301341359 0.886846995415773 0.06476024 0.94371855 prediction 0.686427964004366 Functional Gain - SH3BGR;WRB-SH3BGR ENSG00000185437 CDS Human protein_coding chr21:40871818 chr21:40871822 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_99567 0 0 1 0 2 unknown 0.50023163815769 0.500231643100158 0.8874371 9.88493620290853e-09 hm5C_site_52712 DeepMRMD:0.8874371;iRNA_m5C:9.88493620290853e-09 52713 chr11 117870175 117870175 1 + C A UCEC 117870171 + 117870151 117870191 41 CCCCAACGGGACAGTGGAACCAGCCCACTGAGGAATGGTCA CCCCAACGGGACAGTGGAACCAGCACACTGAGGAATGGTCA < 41bp 0.50765027717583 0.85085169285983 0.14734921 0.16045731 prediction 0.686402831368 Functional Gain - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117870171 chr11:117870175 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_99568 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643817014 0 0 hm5C_site_52713 DeepMRMD:0;iRNA_m5C:0 52714 chr8 144457821 144457821 1 + C A rs144295575 144457817 + 144457797 144457837 41 CAAGGAGCTGCAGATGCGGACGGGCGCTGAGAACCTCTACA CAAGGAGCTGCAGATGCGGACGGGAGCTGAGAACCTCTACA < 41bp 0.490552322838083 0.843186933212071 0.5728619 0.86929506 prediction 0.686373866424142 Functional Gain - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144457817 chr8:144457821 synonymous SNV . 0 25 hm5C_associated_SNPs_99569 0 0 1 0 2 Ribosome 0.500231643918273 0.500231648708868 0.59286632 9.58119095173515e-09 hm5C_site_52714 DeepMRMD:0.59286632;iRNA_m5C:9.58119095173515e-09 52715 chr15 101606890 101606890 1 + C A rs2959197 101606886 + 101606866 101606906 41 CATTGGCCTGGAGAAGGATTCTGGCGCCCAGCGGGGCCGAG CATTGGCCTGGAGAAGGATTCTGGAGCCCAGCGGGGCCGAG < 41bp 0.516264651930371 0.859438765235846 0.74331135 0.80802953 prediction 0.686348226610949 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101606886 chr15:101606890 synonymous SNV . 0 25 hm5C_associated_SNPs_99570 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643920894 0.12943636 0 hm5C_site_52715 DeepMRMD:0.12943636;iRNA_m5C:0 52716 chr13 101710340 101710340 1 + G T LUSC 101710344 - 101710324 101710364 41 AGGAGGAAGTCGGCAAGATGCAGCCGACGCAGGGAAACCCC AGGAGGAAGTCGGCAAGATGCAGCAGACGCAGGGAAACCCC < 41bp 0.507351600513068 0.850510436212188 0.79151535 0.8890885 prediction 0.686317671398239 Functional Gain - NALCN ENSG00000102452 CDS Human protein_coding chr13:101710344 chr13:101710340 synonymous SNV . 0 25 hm5C_associated_SNPs_99571 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.1951463 0 hm5C_site_52716 DeepMRMD:0.1951463;iRNA_m5C:0 52717 chr14 94395123 94395123 1 + C A STAD 94395119 + 94395099 94395139 41 ACTGGGCCCCAGGGAGGGACCTCCCTATGAGGGTAAGAAAA ACTGGGCCCCAGGGAGGGACCTCCATATGAGGGTAAGAAAA < 41bp 0.455147610831507 0.843132904814221 0.8614124 0.9555379 prediction 0.686265809628442 Functional Gain - FAM181A ENSG00000140067 CDS Human protein_coding chr14:94395119 chr14:94395123 synonymous SNV . 0 25 hm5C_associated_SNPs_99572 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.188251 0 hm5C_site_52717 DeepMRMD:0.188251;iRNA_m5C:0 52718 chr11 123894160 123894160 1 + T G ESCA 123894157 + 123894137 123894177 41 TGTGCCCTCCTGGCCACCAGCACTTGGCTCAGTGGCTCTCT TGTGCCCTCCTGGCCACCAGCACGTGGCTCAGTGGCTCTCT < 41bp 0.511439631242607 0.854541685921539 0.22679463 0.75027585 prediction 0.686204109357864 Functional Gain - OR10G9 ENSG00000236981 CDS Human protein_coding chr11:123894157 chr11:123894160 synonymous SNV . 0 24 hm5C_associated_SNPs_99573 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.5005517 0 hm5C_site_52718 DeepMRMD:0.5005517;iRNA_m5C:0 52719 chr9 140508526 140508526 1 + C A KIRP 140508522 + 140508502 140508542 41 GCCACCAAGAAGTTCTCCTACAAGCTGGTGAAGACGGGCAG GCCACCAAGAAGTTCTCCTACAAGATGGTGAAGACGGGCAG < 41bp 0.502221290490868 0.845299006629754 0.48488128 0.36886984 prediction 0.686155432277773 Functional Gain - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140508522 chr9:140508526 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99574 0 0 1 0 1 Ribosome 0.500231643920719 0.500231643921092 0 7.4718009557273e-13 hm5C_site_52719 DeepMRMD:0;iRNA_m5C:7.4718009557273e-13 52720 chr19 36352046 36352046 1 + T G LUSC 36352043 + 36352023 36352063 41 GGTGCTGGGCTCTGGAGCCACACTGCGTCTTCCGTCGGTGG GGTGCTGGGCTCTGGAGCCACACGGCGTCTTCCGTCGGTGG < 41bp 0.482122117970331 0.843071748788387 0.25246966 0.47794282 prediction 0.686143497576774 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352043 chr19:36352046 nonsynonymous SNV 0.644 3 24 hm5C_associated_SNPs_99575 0 0 0 0 1 exosome 0.500231325814088 0.500231643921034 0 6.36213890681248e-07 hm5C_site_52720 DeepMRMD:0;iRNA_m5C:6.36213890681248e-07 52721 chr8 99040013 99040013 1 + C A STAD 99040009 + 99039989 99040029 41 CCATTGTGTTCACCGACGGACGGGCTCAGGATGACGTCTCC CCATTGTGTTCACCGACGGACGGGATCAGGATGACGTCTCC < 41bp 0.520266503953569 0.863303367722789 0.074658096 0.33446157 prediction 0.68607372753844 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99040009 chr8:99040013 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_99576 0 0 0 0 1 Cytosol 0.500232120758029 0.500231644022191 0 0 hm5C_site_52721 DeepMRMD:0;iRNA_m5C:0 52722 chr1 201861016 201861016 1 + C A rs2279681 201861012 + 201860992 201861032 41 TGCTGCCCCTTCAGTGATGCCAACCTTGGGAGATGCCCTCA TGCTGCCCCTTCAGTGATGCCAACATTGGGAGATGCCCTCA < 41bp 0.50262385637755 0.84563989258797 0.012760669 0.027886182 prediction 0.686032072420841 Functional Gain - SHISA4 ENSG00000198892 UTR3 Human protein_coding chr1:201861012 chr1:201861016 . . 0 25 hm5C_associated_SNPs_99577 0 0 0 1 1 Endoplasmic reticulum 0.500231643921092 0.500231643920377 0 0 hm5C_site_52722 DeepMRMD:0;iRNA_m5C:0 52723 chr11 129306690 129306690 1 + C A ACC 129306686 + 129306666 129306706 41 TATCCGCTCCTCTCGGTGATCACCCGCCAGCCCACTGTCAT TATCCGCTCCTCTCGGTGATCACCAGCCAGCCCACTGTCAT < 41bp 0.527737693923967 0.870746756321207 0.0908761 0.260654 prediction 0.686018124794481 Functional Gain - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129306686 chr11:129306690 nonsynonymous SNV 0.983 3 25 hm5C_associated_SNPs_99578 0 0 1 0 1 exosome 0.500231961991007 0.500231643921095 0 0 hm5C_site_52723 DeepMRMD:0;iRNA_m5C:0 52724 chr2 228680244 228680244 1 + C A HNSC 228680240 + 228680220 228680260 41 CCTAAATTTATTGTGGGCTTCACACGGCAGCTGGCCAATGA CCTAAATTTATTGTGGGCTTCACAAGGCAGCTGGCCAATGA < 41bp 0.475689177396464 0.842971835236239 0.052043825 0.22409192 prediction 0.685943670472477 Functional Gain - CCL20 ENSG00000115009 CDS Human protein_coding chr2:228680240 chr2:228680244 synonymous SNV . 0 25 hm5C_associated_SNPs_99579 0 0 1 0 3 nucleus 0.500231640079225 0.500231643920288 0 7.68212582435979e-09 hm5C_site_52724 DeepMRMD:0;iRNA_m5C:7.68212582435979e-09 52725 chr16 28965898 28965898 1 + C A LUSC 28965894 + 28965874 28965914 41 CTCTGCCCCCAGAGGCAGAGCTGGCAGATTCGAGTGGTCTC CTCTGCCCCCAGAGGCAGAGCTGGAAGATTCGAGTGGTCTC < 41bp 0.482109196448096 0.842963409622631 0.2608731 0.27080083 prediction 0.685926819245262 Functional Gain - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28965894 chr16:28965898 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_99580 0 0 1 0 1 Ribosome 0.500231643921094 0.500231643921375 0 5.61772850460329e-13 hm5C_site_52725 DeepMRMD:0;iRNA_m5C:5.61772850460329e-13 52726 chr11 48328565 48328565 1 + C A PRAD 48328561 + 48328541 48328581 41 ACATTCGTCCCTCCACCACCCTGGCTGCTGACAAACTTATC ACATTCGTCCCTCCACCACCCTGGATGCTGACAAACTTATC < 41bp 0.493077683533516 0.842913728292928 0.18809775 0.18741792 prediction 0.685827456585856 Functional Gain - OR4S1 ENSG00000176555 CDS Human protein_coding chr11:48328561 chr11:48328565 nonsynonymous SNV 0.105 1 25 hm5C_associated_SNPs_99581 0 0 0 0 0 unknown 0.500231642099643 0.500231643892924 0 3.58656215837527e-09 hm5C_site_52726 DeepMRMD:0;iRNA_m5C:3.58656215837527e-09 52727 chr16 2257253 2257253 1 + C A STAD 2257249 + 2257229 2257269 41 CCACATCTGGGACTTGAAAACAGACCACAACGAGCAGCTGA CCACATCTGGGACTTGAAAACAGAACACAACGAGCAGCTGA < 41bp 0.5082132298242 0.851095672186551 0.34757254 0.2929676 prediction 0.685764884724703 Functional Gain - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2257249 chr16:2257253 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99582 0 0 1 1 2 chromatin 0.500231643952505 0.500231636450427 0 0 hm5C_site_52727 DeepMRMD:0;iRNA_m5C:0 52728 chr20 30689292 30689292 1 + C A LUAD 30689288 + 30689268 30689308 41 TGTGCTGGATGACTTCTACACGGCCACAGAGAGCCAGTACC TGTGCTGGATGACTTCTACACGGCAACAGAGAGCCAGTACC < 41bp 0.525561730374804 0.868435093926289 0.050233603 0.08663562 prediction 0.68574672710297 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30689288 chr20:30689292 synonymous SNV . 0 25 hm5C_associated_SNPs_99583 0 0 0 0 0 Nucleus 0.500231643921266 0.500231643921092 0 0 hm5C_site_52728 DeepMRMD:0;iRNA_m5C:0 52729 chr1 11839005 11839005 1 + C A rs370523367 11839001 + 11838981 11839021 41 AGGTTCCCAGGGCCCCCACCCTCCCGGACACTCTCCAGGGG AGGTTCCCAGGGCCCCCACCCTCCAGGACACTCTCCAGGGG < 41bp 0.489661536379187 0.842866173404395 0.12846497 0.9369706 prediction 0.685732346808791 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11839001 chr1:11839005 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_99584 0 0 0 0 1 chromatin 0.500231644243646 0.500231643923478 0.8739412 0 hm5C_site_52729 DeepMRMD:0.8739412;iRNA_m5C:0 52730 chr11 48267190 48267190 1 + C A LUAD 48267186 + 48267166 48267206 41 TGTGACCTAGTTCCCCTTCTCAAACTTGCCTGCTCTGACAC TGTGACCTAGTTCCCCTTCTCAAAATTGCCTGCTCTGACAC < 41bp 0.500122360118193 0.842969802309159 0.2368173 0.42989436 prediction 0.685694884381932 Functional Gain - OR4X2 ENSG00000172208 CDS Human polymorphic_pseudogene chr11:48267186 chr11:48267190 nonsynonymous SNV 0.745 4 25 hm5C_associated_SNPs_99585 0 0 0 0 0 unknown 0.50023164404782 0.500231644795677 0 1.49571377505708e-09 hm5C_site_52730 DeepMRMD:0;iRNA_m5C:1.49571377505708e-09 52731 chr22 29446450 29446450 1 + C A UCEC 29446446 + 29446426 29446466 41 GGAAGCTCCCAGGGCTTGTACGGCCTTCACCCCGACCATTT GGAAGCTCCCAGGGCTTGTACGGCATTCACCCCGACCATTT < 41bp 0.520090024935352 0.862875501607821 0.5173655 0.42843962 prediction 0.685570953344939 Functional Gain - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29446446 chr22:29446450 nonsynonymous SNV 0.660 0 25 hm5C_associated_SNPs_99586 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52731 DeepMRMD:0;iRNA_m5C:0 52732 chr16 2522256 2522256 1 + C A UCEC 2522252 + 2522232 2522272 41 GCTTCCCCGCACCCCTGGCCCAGCCTGATGGCAGCGGCCTT GCTTCCCCGCACCCCTGGCCCAGCATGATGGCAGCGGCCTT < 41bp 0.498604620260283 0.842763861059638 0.18501225 0.25828898 prediction 0.685527722119276 Functional Gain - NTN3 ENSG00000162068 CDS Human protein_coding chr16:2522252 chr16:2522256 nonsynonymous SNV 0.978 1 25 hm5C_associated_SNPs_99587 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52732 DeepMRMD:0;iRNA_m5C:0 52733 chr16 30594036 30594036 1 + G T TGCT 30594040 - 30594020 30594060 41 AAAGGCTTCAAGCGCAAGACCGCCCTGGAAGCCCATCGGTG AAAGGCTTCAAGCGCAAGACCGCCATGGAAGCCCATCGGTG < 41bp 0.521508621565264 0.864240733962908 0.07666582 0.5127368 prediction 0.685464224795289 Functional Gain - ZNF785 ENSG00000197162 CDS Human protein_coding chr16:30594040 chr16:30594036 nonsynonymous SNV 0.009 2 25 hm5C_associated_SNPs_99588 0 0 1 0 0 Nucleus 0.500231644059106 0.500231638566204 0.0254736 0 hm5C_site_52733 DeepMRMD:0.0254736;iRNA_m5C:0 52734 chr20 2291017 2291017 1 + T G UCEC 2291014 + 2290994 2291034 41 TTCTCCCAGGGCGGCATCTCCTCTGTGAAACTTGGGACGTT TTCTCCCAGGGCGGCATCTCCTCGGTGAAACTTGGGACGTT < 41bp 0.513429161527544 0.856150096147712 0.23545101 0.83485436 prediction 0.685441869240336 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2291014 chr20:2291017 synonymous SNV . 0 24 hm5C_associated_SNPs_99589 0 0 0 0 1 exosome 0.500231643921046 0.500231643921092 0.66970872 9.2148511043888e-14 hm5C_site_52734 DeepMRMD:0.66970872;iRNA_m5C:9.2148511043888e-14 52735 chr20 21687201 21687201 1 + C A UCEC 21687197 + 21687177 21687217 41 GGCATCCGACCCTGTGACATCAGTCGGCAGCTCCGCGTATC GGCATCCGACCCTGTGACATCAGTAGGCAGCTCCGCGTATC < 41bp 0.521482426013905 0.864199148187816 0.29020658 0.5140287 prediction 0.685433444347823 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21687197 chr20:21687201 synonymous SNV . 0 25 hm5C_associated_SNPs_99590 0 0 0 0 0 unknown 0.500230164390629 0.500231643891465 0.0280574 2.95900167168739e-06 hm5C_site_52735 DeepMRMD:0.0280574;iRNA_m5C:2.95900167168739e-06 52736 chr2 48807910 48807910 1 + C A LUAD 48807906 + 48807886 48807926 41 TGGACTGAAGCTGAACCTTCCTGGCCTCAGGGAATTTCCCA TGGACTGAAGCTGAACCTTCCTGGACTCAGGGAATTTCCCA < 41bp 0.48209520483731 0.84271257230132 0.19852951 0.21318623 prediction 0.68542514460264 Functional Gain - STON1;STON1-GTF2A1L ENSG00000068781;ENSG00000243244 CDS Human other chr2:48807906 chr2:48807910 synonymous SNV . 0 25 hm5C_associated_SNPs_99591 0 0 0 0 0 unknown 0.500229374189724 0.500231561741613 0 4.37510377881978e-06 hm5C_site_52736 DeepMRMD:0;iRNA_m5C:4.37510377881978e-06 52737 chr11 18195491 18195491 1 + C A LUAD 18195487 + 18195467 18195507 41 GTGCTGGTCTTCCTCCTCTGCGGCCTGCCCTTCGGCATTCT GTGCTGGTCTTCCTCCTCTGCGGCATGCCCTTCGGCATTCT < 41bp 0.510426253818852 0.853094442970024 0.41320616 0.46889403 prediction 0.685336378302344 Functional Gain - MRGPRX4 ENSG00000179817 CDS Human protein_coding chr11:18195487 chr11:18195491 nonsynonymous SNV 0.014 3 25 hm5C_associated_SNPs_99592 0 0 0 0 0 unknown 0.500231643921096 0.500231643924149 0 6.10422823399404e-12 hm5C_site_52737 DeepMRMD:0;iRNA_m5C:6.10422823399404e-12 52738 chr1 248551409 248551409 1 + C A LUAD 248551405 + 248551385 248551425 41 TCACCCCCATTACCATGAGTCTCCCGTTCTGTGCCTCTCAC TCACCCCCATTACCATGAGTCTCCAGTTCTGTGCCTCTCAC < 41bp 0.475010013739718 0.842665409130829 0.08128807 0.92601514 prediction 0.685330818261657 Functional Gain - OR2T6 ENSG00000198104 CDS Human protein_coding chr1:248551405 chr1:248551409 nonsynonymous SNV 0.494 4 25 hm5C_associated_SNPs_99593 0 0 0 0 0 unknown 0.500231626264402 0.500231644146884 0.85203028 3.57649632132251e-08 hm5C_site_52738 DeepMRMD:0.85203028;iRNA_m5C:3.57649632132251e-08 Intelligence 52739 chr16 1035322 1035322 1 + C A LUAD 1035318 + 1035298 1035338 41 CCCTGCTCAACGGCCTGGCCCTGCCGCCCGCCCACAGCCCC CCCTGCTCAACGGCCTGGCCCTGCAGCCCGCCCACAGCCCC < 41bp 0.514824830789881 0.857480637336314 0.2314345 0.21775582 prediction 0.685311613092865 Functional Gain - SOX8 ENSG00000005513 CDS Human protein_coding chr16:1035318 chr16:1035322 nonsynonymous SNV 0.022 4 25 hm5C_associated_SNPs_99594 0 0 0 0 0 exosome 0.500231643920939 0.500231643921092 0 3.07087688611318e-13 hm5C_site_52739 DeepMRMD:0;iRNA_m5C:3.07087688611318e-13 52740 chr9 90502147 90502147 1 + C A LUSC 90502143 + 90502123 90502163 41 AACAACAAGCAAGTCAGTCCCGACCGTGAGTGGCCCTCTCG AACAACAAGCAAGTCAGTCCCGACAGTGAGTGGCCCTCTCG < 41bp 0.510127634646489 0.852782360489617 0.20029497 0.62706697 prediction 0.685309451686256 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90502143 chr9:90502147 synonymous SNV . 0 25 hm5C_associated_SNPs_99595 0 0 0 0 0 exosome 0.500231647606829 0.500231643891052 0.25413394 0 hm5C_site_52740 DeepMRMD:0.25413394;iRNA_m5C:0 52741 chr6 106554930 106554930 1 + C A LUSC 106554926 + 106554906 106554946 41 AAACTGCACAAGCGTCTGCACACCCGGGAGCGGCCCCACAA AAACTGCACAAGCGTCTGCACACCAGGGAGCGGCCCCACAA < 41bp 0.529665587312119 0.872297461738886 0.0360744 0.17673185 prediction 0.685263748853534 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106554926 chr6:106554930 synonymous SNV . 0 25 hm5C_associated_SNPs_99596 0 0 0 0 0 cytosol 0.500231643921093 0.500231643921176 0 1.66533453693773e-13 hm5C_site_52741 DeepMRMD:0;iRNA_m5C:1.66533453693773e-13 52742 chr21 31768648 31768648 1 + C A COAD 31768644 + 31768624 31768664 41 AGCCCCTGCCAGACCTCCTGCTACCGTCCCAGAACCTCCTT AGCCCCTGCCAGACCTCCTGCTACAGTCCCAGAACCTCCTT < 41bp 0.517683924066909 0.86031324238589 0.28072587 0.2331652 prediction 0.685258636637962 Functional Gain - KRTAP13-1 ENSG00000198390 CDS Human protein_coding chr21:31768644 chr21:31768648 nonsynonymous SNV 0.770 0 25 hm5C_associated_SNPs_99597 0 0 0 0 0 unknown 0.500231643921092 0.500231643921097 0 9.10382880192628e-15 hm5C_site_52742 DeepMRMD:0;iRNA_m5C:9.10382880192628e-15 52743 chr7 29923497 29923497 1 + C A STAD 29923493 + 29923473 29923513 41 GACAGGGCAGGGCCCTGGCTCCCGCGCGCCCTCTCCCAGGC GACAGGGCAGGGCCCTGGCTCCCGAGCGCCCTCTCCCAGGC < 41bp 0.534075837629614 0.876653644096741 0.07407355 0.08475974 prediction 0.685155612934254 Functional Gain - WIPF3 ENSG00000122574 CDS Human protein_coding chr7:29923493 chr7:29923497 synonymous SNV . 0 25 hm5C_associated_SNPs_99598 0 0 1 0 1 nucleolus 0.500231643921091 0.500231643921092 0 2.66453525910038e-15 hm5C_site_52743 DeepMRMD:0;iRNA_m5C:2.66453525910038e-15 52744 chr16 27460293 27460293 1 + C A LUAD 27460289 + 27460269 27460309 41 TGTGGCTGTGTCTCAGCTGGCAGCCCTGGGCTAGGAGGGCC TGTGGCTGTGTCTCAGCTGGCAGCACTGGGCTAGGAGGGCC < 41bp 0.487549317414008 0.842554573406668 0.32069847 0.38813683 prediction 0.685109146813335 Functional Gain - IL21R ENSG00000103522 CDS Human protein_coding chr16:27460289 chr16:27460293 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_99599 0 0 0 0 0 nucleus 0.500231643921138 0.50023164390872 0 0 hm5C_site_52744 DeepMRMD:0;iRNA_m5C:0 52745 chrX 15568067 15568067 1 + C A LUAD 15568063 + 15568043 15568083 41 TCCCAGGGCCACAGGCTTTACCGGCCCCACCTGGCATCGGA TCCCAGGGCCACAGGCTTTACCGGACCCACCTGGCATCGGA < 41bp 0.51743082061693 0.859938250115818 0.30381277 0.5544623 prediction 0.685014858997777 Functional Gain - BMX ENSG00000102010 CDS Human protein_coding chrX:15568063 chrX:15568067 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_99600 0 0 1 0 0 cytosol 0.500231643920836 0.500231643921092 0.1089246 5.11590769747272e-13 hm5C_site_52745 DeepMRMD:0.1089246;iRNA_m5C:5.11590769747272e-13 52746 chr15 57809027 57809027 1 + C A rs149779988 57809023 + 57809003 57809043 41 GCAACACTTCAGAGCAAGACCAGGCGGGGACTGAAATGCGC GCAACACTTCAGAGCAAGACCAGGAGGGGACTGAAATGCGC < 41bp 0.474631197249522 0.842501659409938 0.3898012 0.61312366 prediction 0.685003318819876 Functional Gain - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57809023 chr15:57809027 nonsynonymous SNV 0.128 0 25 hm5C_associated_SNPs_99601 0 0 0 0 1 cytosol 0.50022873886416 0.500231645198648 0.22624732 5.81266897614618e-06 hm5C_site_52746 DeepMRMD:0.22624732;iRNA_m5C:5.81266897614618e-06 52747 chr11 48346988 48346988 1 + T G STAD 48346985 + 48346965 48347005 41 CTACCATCATGACCAGGCATCTCTGTGCCATGCTTGTAGGG CTACCATCATGACCAGGCATCTCGGTGCCATGCTTGTAGGG < 41bp 0.49962800089176 0.842494811132856 0.14134163 0.75605774 prediction 0.684989622265711 Functional Gain - OR4C3 ENSG00000176547 CDS Human protein_coding chr11:48346985 chr11:48346988 nonsynonymous SNV 0.018 4 24 hm5C_associated_SNPs_99602 0 0 0 0 0 exosome 0.500231642278365 0.500231643921477 0.51211548 3.28622218326302e-09 hm5C_site_52747 DeepMRMD:0.51211548;iRNA_m5C:3.28622218326302e-09 52748 chr15 50497527 50497527 1 + T G SKCM 50497524 + 50497504 50497544 41 GTCACTGTCATTCAGTATATCGGTGAACTGCTTCGGTATTT GTCACTGTCATTCAGTATATCGGGGAACTGCTTCGGTATTT < 41bp 0.51399970929743 0.856490685034712 0.37833562 0.92593503 prediction 0.684981951474565 Functional Gain - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50497524 chr15:50497527 synonymous SNV . 0 24 hm5C_associated_SNPs_99603 0 0 0 0 2 Ribosome 0.500231643932225 0.500231644115442 0.85187006 3.66433550169631e-10 hm5C_site_52748 DeepMRMD:0.85187006;iRNA_m5C:3.66433550169631e-10 52749 chr22 40367029 40367029 1 + C A LUSC 40367025 + 40367005 40367045 41 TCCAACCCATCCTGGTGGACCGGCCGCCTGCACAACAAGCT TCCAACCCATCCTGGTGGACCGGCAGCCTGCACAACAAGCT < 41bp 0.512335181348567 0.854809265097358 0.29311585 0.37317804 prediction 0.684948167497582 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40367025 chr22:40367029 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_99604 0 0 0 0 0 chromatin 0.500231643944583 0.500231643921239 0 0 hm5C_site_52749 DeepMRMD:0;iRNA_m5C:0 52750 chr17 42428520 42428520 1 + C A COAD 42428516 + 42428496 42428536 41 CCACGGACCTCCTCACTAAGCTGCCTGCGCACACAGGTACC CCACGGACCTCCTCACTAAGCTGCATGCGCACACAGGTACC < 41bp 0.463327482982299 0.842468520823497 0.26768076 0.26598263 prediction 0.684937041646993 Functional Gain - GRN ENSG00000030582 CDS Human protein_coding chr17:42428516 chr17:42428520 nonsynonymous SNV 0.032 3 25 hm5C_associated_SNPs_99605 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921435 0 6.84341472378946e-13 hm5C_site_52750 DeepMRMD:0;iRNA_m5C:6.84341472378946e-13 52751 chr11 60105419 60105419 1 + C A UCEC 60105415 + 60105395 60105435 41 GCCATAGAGCCAAAGCCAGTCTGGCTGTAAGTATTTTTTAG GCCATAGAGCCAAAGCCAGTCTGGATGTAAGTATTTTTTAG < 41bp 0.504916669670721 0.847365701629741 0.054515123 0.1141811 prediction 0.68489806391804 Functional Gain - MS4A6E ENSG00000166926 CDS Human protein_coding chr11:60105415 chr11:60105419 nonsynonymous SNV 0.532 2 25 hm5C_associated_SNPs_99606 0 0 0 0 1 exosome 0.500545819908675 0.500318058534998 0 0 hm5C_site_52751 DeepMRMD:0;iRNA_m5C:0 52752 chr10 112760217 112760217 1 + C A UCEC 112760213 + 112760193 112760233 41 CGTCTTGGTCTGAGATATAACAGACTGTCAGCAATACCCAG CGTCTTGGTCTGAGATATAACAGAATGTCAGCAATACCCAG < 41bp 0.487847541632627 0.842420173289669 0.41267383 0.34469444 prediction 0.684840346579338 Functional Gain - SHOC2 ENSG00000108061 CDS Human protein_coding chr10:112760213 chr10:112760217 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_99607 0 0 1 0 2 Nucleus 0.500231618336697 0.500231643916566 0 5.11597395558283e-08 hm5C_site_52752 DeepMRMD:0;iRNA_m5C:5.11597395558283e-08 52753 chr5 3599468 3599468 1 + C A COAD 3599464 + 3599444 3599484 41 CCCGGGCGGCCCAAGAACGCCACCCGCGAGAGCACCAGCAC CCCGGGCGGCCCAAGAACGCCACCAGCGAGAGCACCAGCAC < 41bp 0.531397228697453 0.873811413067533 0.90668625 0.907425 prediction 0.68482836874016 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3599464 chr5:3599468 nonsynonymous SNV 0.976 5 25 hm5C_associated_SNPs_99608 0 0 0 0 0 exosome 0.500232292967076 0.500231906013296 0.00147750000000002 0 hm5C_site_52753 DeepMRMD:0.00147750000000002;iRNA_m5C:0 52754 chrX 47045565 47045565 1 + C A UCEC 47045561 + 47045541 47045581 41 GAAGTACGGCGGCATATCCACAGCCTCTGTGTGAGTGGCTG GAAGTACGGCGGCATATCCACAGCATCTGTGTGAGTGGCTG < 41bp 0.48390464209691 0.842341573891099 0.40379918 0.33765888 prediction 0.684683147782198 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47045561 chrX:47045565 synonymous SNV . 0 25 hm5C_associated_SNPs_99609 0 0 1 0 1 Ribosome 0.500231643864463 0.500231656645968 0 2.55630090428838e-08 hm5C_site_52754 DeepMRMD:0;iRNA_m5C:2.55630090428838e-08 52755 chr11 6898654 6898654 1 + C A rs181623241 6898650 + 6898630 6898670 41 TCTTCTATAGCACTGCCATCCTCACGTATTTCCGACCCCAA TCTTCTATAGCACTGCCATCCTCAAGTATTTCCGACCCCAA < 41bp 0.481678622601601 0.842336716680301 0.07646465 0.3362288 prediction 0.684673433360602 Functional Gain - OR10A4 ENSG00000170782 CDS Human protein_coding chr11:6898650 chr11:6898654 nonsynonymous SNV 0.327 1 25 hm5C_associated_SNPs_99610 0 0 0 0 0 exosome 0.500231672745977 0.500231654224182 0 0 hm5C_site_52755 DeepMRMD:0;iRNA_m5C:0 52756 chr20 44422598 44422598 1 + C A UCEC 44422594 + 44422574 44422614 41 CCATCTCCATGGATCTCCTCCGAGCTGTCCTGCAGCCCAGC CCATCTCCATGGATCTCCTCCGAGATGTCCTGCAGCCCAGC < 41bp 0.527993913675473 0.870327957441405 0.507576 0.53040886 prediction 0.684668087531864 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44422594 chr20:44422598 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_99611 0 0 1 0 2 cytosol 0.500231643920838 0.500231739188337 0.0456657199999999 1.90534997335234e-07 hm5C_site_52756 DeepMRMD:0.0456657199999999;iRNA_m5C:1.90534997335234e-07 52757 chr3 46414779 46414779 1 + C A UCEC 46414775 + 46414755 46414795 41 TCCTGACAATCGATAGGTACCTGGCTGTCGTCCATGCTGTG TCCTGACAATCGATAGGTACCTGGATGTCGTCCATGCTGTG < 41bp 0.521453695226444 0.863732693547272 0.09017122 0.171184 prediction 0.684557996641656 Functional Gain - CCR5 ENSG00000160791 CDS Human protein_coding chr3:46414775 chr3:46414779 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_99612 0 0 0 0 0 exosome 0.500232487117688 0.500231258425905 0 0 hm5C_site_52757 DeepMRMD:0;iRNA_m5C:0 52758 chr12 93100710 93100710 1 + C A SKCM 93100706 + 93100686 93100726 41 GGATTCTTCACACTTGCTGTCACCCTTGAGACTCCACTCAA GGATTCTTCACACTTGCTGTCACCATTGAGACTCCACTCAA < 41bp 0.472407635229288 0.842225728069088 0.034995914 0.07095772 prediction 0.684451456138175 Functional Gain - C12orf74 ENSG00000214215 CDS Human protein_coding chr12:93100706 chr12:93100710 synonymous SNV . 0 25 hm5C_associated_SNPs_99613 0 0 0 0 0 exosome 0.500231643818672 0.500231644418654 0 1.19996390601784e-09 hm5C_site_52758 DeepMRMD:0;iRNA_m5C:1.19996390601784e-09 52759 chr19 41726615 41726615 1 + C A STAD 41726611 + 41726591 41726631 41 GGTGCCCGGGGACTCACGGGCACCCTTCGGTGTCAGCTCCA GGTGCCCGGGGACTCACGGGCACCATTCGGTGTCAGCTCCA < 41bp 0.452624806341948 0.842204494969015 0.11593178 0.10392651 prediction 0.684408989938031 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41726611 chr19:41726615 nonsynonymous SNV 0.151 2 25 hm5C_associated_SNPs_99614 0 0 0 0 1 Nucleus 0.500231631194592 0.500231643920021 0 2.54508580876944e-08 hm5C_site_52759 DeepMRMD:0;iRNA_m5C:2.54508580876944e-08 52760 chr1 3679813 3679813 1 + C A UCEC 3679809 + 3679789 3679829 41 GGTGTGAGCCAGATGGGATCCGTGCATGAGGAGGGAAGCGA GGTGTGAGCCAGATGGGATCCGTGAATGAGGAGGGAAGCGA < 41bp 0.489362855681879 0.842200929298642 0.39514166 0.446811 prediction 0.684401858597284 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3679809 chr1:3679813 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99615 0 0 0 0 0 exosome 0.500231643258445 0.499885205039733 0 0 hm5C_site_52760 DeepMRMD:0;iRNA_m5C:0 52761 chr1 175048699 175048699 1 + C A HNSC 175048695 + 175048675 175048715 41 TGCAGCGGACACGGCGAGTGCGTGCGCGGCGTGTGCCAGTG TGCAGCGGACACGGCGAGTGCGTGAGCGGCGTGTGCCAGTG < 41bp 0.530093229786366 0.872275693359936 0.32507378 0.71465385 prediction 0.68436492714714 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175048695 chr1:175048699 nonsynonymous SNV 0.041 0 25 hm5C_associated_SNPs_99616 0 0 0 0 0 exosome 0.500231643921092 0.500231643921056 0.4293077 0 hm5C_site_52761 DeepMRMD:0.4293077;iRNA_m5C:0 52762 chr1 180217446 180217446 1 + C A LUAD 180217442 + 180217422 180217462 41 ATTCCCCAGTGCGCTGGCTGCAACCAGCACATCCTGGACAA ATTCCCCAGTGCGCTGGCTGCAACAAGCACATCCTGGACAA < 41bp 0.465107162947467 0.842173870904089 0.02599001 0.089550555 prediction 0.684347741808178 Functional Gain - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180217442 chr1:180217446 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99617 0 0 1 0 1 chromatin 0.500231643870205 0.500231680638843 0 7.35372771565324e-08 hm5C_site_52762 DeepMRMD:0;iRNA_m5C:7.35372771565324e-08 52763 chr2 183943850 183943850 1 + C A BRCA 183943846 + 183943826 183943866 41 TTATGTGCAGGACCTTAGCTCGGACCTGCAAGTTGGCGTTA TTATGTGCAGGACCTTAGCTCGGAACTGCAAGTTGGCGTTA < 41bp 0.504144829590501 0.846272874837604 0.8794687 0.8870342 prediction 0.684256090494205 Functional Gain - DUSP19 ENSG00000162999 CDS Human protein_coding chr2:183943846 chr2:183943850 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_99618 0 0 1 0 1 Nucleus 0.500231643910712 0.500231643921485 0.015131 2.15454321050856e-11 hm5C_site_52763 DeepMRMD:0.015131;iRNA_m5C:2.15454321050856e-11 52764 chr16 49412473 49412473 1 + C A HNSC 49412469 + 49412449 49412489 41 GAAACACCTCAGCATGGTCCCTGGCAGCTACATCAAGGATG GAAACACCTCAGCATGGTCCCTGGAAGCTACATCAAGGATG < 41bp 0.520562337936314 0.862679008062923 0.018480211 0.079768 prediction 0.684233340253217 Functional Gain - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49412469 chr16:49412473 synonymous SNV . 0 25 hm5C_associated_SNPs_99619 0 0 0 0 2 exosome 0.500231644190783 0.500231632582795 0 0 hm5C_site_52764 DeepMRMD:0;iRNA_m5C:0 52765 chr1 100964777 100964777 1 + C A READ 100964773 + 100964753 100964793 41 ATCCTCCGACCCTCCTACACCGGGCTTTCTTCTTCTTCAGC ATCCTCCGACCCTCCTACACCGGGATTTCTTCTTCTTCAGC < 41bp 0.509702430192274 0.85177805250451 0.5635501 0.8341048 prediction 0.684151244624473 Functional Gain - CDC14A ENSG00000079335 CDS Human protein_coding chr1:100964773 chr1:100964777 nonsynonymous SNV 0.580 3 25 hm5C_associated_SNPs_99620 0 0 1 0 1 Cytosol 0.500231643926728 0.500231644142626 0.5411094 4.31795710298388e-10 hm5C_site_52765 DeepMRMD:0.5411094;iRNA_m5C:4.31795710298388e-10 52766 chr19 55897974 55897974 1 + T G COAD 55897971 + 55897951 55897991 41 TGAAGGCCCGCAATTCCTTCCGCTACAACGGACTGATTCAC TGAAGGCCCGCAATTCCTTCCGCGACAACGGACTGATTCAC < 41bp 0.497817111503278 0.842034759189188 0.25765654 0.2809406 prediction 0.684069518378377 Functional Gain - RPL28 ENSG00000108107 CDS Human protein_coding chr19:55897971 chr19:55897974 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_99621 0 0 1 0 2 Cytosol 0.500231643921113 0.50023164164404 0 0 hm5C_site_52766 DeepMRMD:0;iRNA_m5C:0 52767 chr1 206666410 206666410 1 + C A UCEC 206666406 + 206666386 206666426 41 CCTGGTTGGCTGTTCTGTGGCTGCCTGTAACACAGAAGCCC CCTGGTTGGCTGTTCTGTGGCTGCATGTAACACAGAAGCCC < 41bp 0.457455824393622 0.842013359458285 0.14095208 0.7161258 prediction 0.68402671891657 Functional Gain - IKBKE ENSG00000143466;ENSG00000162888 exonic;splicing Human other chr1:206666406 chr1:206666410 synonymous SNV . 0 25 hm5C_associated_SNPs_99622 0 0 0 0 1 Cytosol 0.500231662176057 0.500231643910804 0.4322516 0 hm5C_site_52767 DeepMRMD:0.4322516;iRNA_m5C:0 52768 chr2 42557309 42557309 1 + C A BRCA 42557305 + 42557285 42557325 41 AGCAAGGAGCAGGCCAAAGCCACCCTTCTGGAGGACCAGCA AGCAAGGAGCAGGCCAAAGCCACCATTCTGGAGGACCAGCA < 41bp 0.464570849454102 0.841938105129258 0.1435456 0.2510413 prediction 0.683876210258516 Functional Gain - EML4 ENSG00000143924 CDS Human protein_coding chr2:42557305 chr2:42557309 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99623 0 0 1 0 0 Cytosol 0.500231643921098 0.500231608386607 0 0 hm5C_site_52768 DeepMRMD:0;iRNA_m5C:0 52769 chr20 55012500 55012500 1 + C A COAD 55012496 + 55012476 55012516 41 ATCAGGTGCCCACTCTACCCCGCCCTCCCACTCCAGGCCCC ATCAGGTGCCCACTCTACCCCGCCATCCCACTCCAGGCCCC < 41bp 0.447610520776713 0.841897556828406 0.037137985 0.11012074 prediction 0.683795113656813 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55012496 chr20:55012500 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_99624 0 0 0 0 0 chromatin 0.500231643502386 0.500231643909949 0 8.1512574467979e-10 hm5C_site_52769 DeepMRMD:0;iRNA_m5C:8.1512574467979e-10 52770 chr12 55524110 55524110 1 + C A UCEC 55524106 + 55524086 55524126 41 CATTAGCTCAGTTATTCAGACTAGCATGACATTTACTTTAT CATTAGCTCAGTTATTCAGACTAGAATGACATTTACTTTAT < 41bp 0.506806234630716 0.848690834703179 0.12899175 0.25716865 prediction 0.683769200144924 Functional Gain - OR9K2 ENSG00000170605 CDS Human protein_coding chr12:55524106 chr12:55524110 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_99625 0 0 0 0 0 unknown 0.500231684091785 0.500231893467097 0 4.18750624398001e-07 hm5C_site_52770 DeepMRMD:0;iRNA_m5C:4.18750624398001e-07 52771 chr7 100778327 100778327 1 + C A rs2227687 100778323 + 100778303 100778343 41 TTAAAAATACAAAAATTAGCCAGCCGTGGTAGCGAGCGCCT TTAAAAATACAAAAATTAGCCAGCAGTGGTAGCGAGCGCCT < 41bp 0.491996694300925 0.841863118831715 0.15007481 0.11760375 prediction 0.683726237663431 Functional Gain - SERPINE1 ENSG00000106366 intronic Human protein_coding chr7:100778323 chr7:100778327 . . 0 25 hm5C_associated_SNPs_99626 0 0 0 0 0 Ribosome 0.500231514504181 0.500231643884893 0 2.58761424287712e-07 hm5C_site_52771 DeepMRMD:0;iRNA_m5C:2.58761424287712e-07 52772 chr14 52186845 52186845 1 + C A PAAD 52186841 + 52186821 52186861 41 ACATGGACCAGCTGGAAAAACGGTCGCGGGCCAGCGGGAGC ACATGGACCAGCTGGAAAAACGGTAGCGGGCCAGCGGGAGC < 41bp 0.522533953111256 0.86437336347757 0.15027729 0.17489633 prediction 0.683678820732627 Functional Gain - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52186841 chr14:52186845 stopgain 0.301 1 25 hm5C_associated_SNPs_99627 0 0 1 0 1 nucleus 0.500231215105358 0.500231643968248 0 8.57725781289176e-07 hm5C_site_52772 DeepMRMD:0;iRNA_m5C:8.57725781289176e-07 52773 chr5 36677139 36677139 1 + T G SKCM 36677136 + 36677116 36677156 41 GCTGGTCCCAGTTCCAGGATCTGTGAATGGAGTCAATGCCC GCTGGTCCCAGTTCCAGGATCTGGGAATGGAGTCAATGCCC < 41bp 0.484119006043107 0.841838308428251 0.28092614 0.6904826 prediction 0.683676616856502 Functional Gain - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36677136 chr5:36677139 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_99628 0 0 1 0 0 Endoplasmic reticulum 0.500231643921328 0.500231659049207 0.3809652 3.02557574549667e-08 hm5C_site_52773 DeepMRMD:0.3809652;iRNA_m5C:3.02557574549667e-08 52774 chr17 48917698 48917698 1 + C A LUAD 48917694 + 48917674 48917714 41 CCCGCTGGCACTTCGATGCCCAGGCCAACAACTGCCTGACC CCCGCTGGCACTTCGATGCCCAGGACAACAACTGCCTGACC < 41bp 0.479428106828462 0.841819623360403 0.7241078 0.81412005 prediction 0.683639246720805 Functional Gain - WFIKKN2 ENSG00000173714 CDS Human protein_coding chr17:48917694 chr17:48917698 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_99629 0 0 0 0 0 exosome 0.500231643438677 0.500231643921103 0.1800245 9.64852420182183e-10 hm5C_site_52774 DeepMRMD:0.1800245;iRNA_m5C:9.64852420182183e-10 52775 chr1 152732270 152732270 1 + C A LUAD 152732266 + 152732246 152732286 41 ACCAGGCTCCATGCCAGTCTCAGACCACACAGGTGAAGTGC ACCAGGCTCCATGCCAGTCTCAGAACACACAGGTGAAGTGC < 41bp 0.483039398895394 0.84180923081924 0.9187678 0.9232773 prediction 0.68361846163848 Functional Gain - KPRP ENSG00000203786 CDS Human protein_coding chr1:152732266 chr1:152732270 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_99630 0 0 0 0 0 exosome 0.500230261814652 0.500231644950867 0.00901899999999989 2.76627243067651e-06 hm5C_site_52775 DeepMRMD:0.00901899999999989;iRNA_m5C:2.76627243067651e-06 52776 chr22 25019761 25019761 1 + C A rs185947660 25019757 + 25019737 25019777 41 GATCAACCAGGGTACAACTTCTCCCGGGAGAGCGTGGAGAG GATCAACCAGGGTACAACTTCTCCAGGGAGAGCGTGGAGAG < 41bp 0.546594192150053 0.888384290424121 0.17464536 0.899613 prediction 0.683580196548135 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25019757 chr22:25019761 synonymous SNV . 0 25 hm5C_associated_SNPs_99631 0 0 1 0 0 exosome 0.500231418824116 0.500231643920959 0.799226 4.50193686329925e-07 hm5C_site_52776 DeepMRMD:0.799226;iRNA_m5C:4.50193686329925e-07 Acute lymphoblastic leukemia (childhood) 52777 chr2 239039261 239039261 1 + C A rs577017892 239039257 + 239039237 239039277 41 ACCTGCAGGGAGGCCTCGGCCAGCCCCCCTCGGAGCGAGGC ACCTGCAGGGAGGCCTCGGCCAGCACCCCTCGGAGCGAGGC < 41bp 0.505880413695046 0.847644503817348 0.16076705 0.1896041 prediction 0.683528180244604 Functional Gain - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239039257 chr2:239039261 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99632 0 0 0 0 0 exosome 0.500231643921092 0.500231643923527 0 4.86855000758624e-12 hm5C_site_52777 DeepMRMD:0;iRNA_m5C:4.86855000758624e-12 52778 chr2 69204834 69204834 1 + T G LUAD 69204831 + 69204811 69204851 41 CAGCAGTCAGTGAGTGTCAACAATGAACACAATGTGGCCAA CAGCAGTCAGTGAGTGTCAACAAGGAACACAATGTGGCCAA < 41bp 0.499689490215832 0.841752941939755 0.051365465 0.6757944 prediction 0.683505883879509 Functional Gain - GKN1 ENSG00000169605 CDS Human protein_coding chr2:69204831 chr2:69204834 nonsynonymous SNV 0.984 1 24 hm5C_associated_SNPs_99633 0 0 0 0 2 exosome 0.500235673237941 0.500231660137054 0.3515888 0 hm5C_site_52778 DeepMRMD:0.3515888;iRNA_m5C:0 52779 chr11 64940678 64940678 1 + C A STAD 64940674 + 64940654 64940694 41 TCTTCCCAAAGCCTCCGGCACGCCCTGGGCACTGAAGCTCT TCTTCCCAAAGCCTCCGGCACGCCATGGGCACTGAAGCTCT < 41bp 0.495002807372555 0.841743262140747 0.021463662 0.2475647 prediction 0.683486524281494 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64940674 chr11:64940678 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_99634 0 0 0 0 1 nucleolus 0.500231643921092 0.500231643928986 0 1.57871493655648e-11 hm5C_site_52779 DeepMRMD:0;iRNA_m5C:1.57871493655648e-11 52780 chr2 108910805 108910805 1 + C A COAD 108910801 + 108910781 108910821 41 TTGAGTGGGCTCGGCCACCCCAACCTTCTGGTGAGAGCACC TTGAGTGGGCTCGGCCACCCCAACATTCTGGTGAGAGCACC < 41bp 0.47334911759923 0.841695449799237 0.07174051 0.09821761 prediction 0.683390899598473 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910801 chr2:108910805 nonsynonymous SNV 0.631 1 25 hm5C_associated_SNPs_99635 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52780 DeepMRMD:0;iRNA_m5C:0 52781 chr1 155178721 155178721 1 + C A LUAD 155178717 + 155178697 155178737 41 CTGGCCCAGGCGCACAAGACCCCGCTCTCCAGAGCCTGCCG CTGGCCCAGGCGCACAAGACCCCGATCTCCAGAGCCTGCCG < 41bp 0.507019147990899 0.848711006033205 0.11277783 0.06260207 prediction 0.683383716084612 Functional Gain - MTX1 ENSG00000173171 CDS Human protein_coding chr1:155178717 chr1:155178721 synonymous SNV . 0 25 hm5C_associated_SNPs_99636 0 0 0 0 0 Ribosome 0.500231644385716 0.50023164392337 0 0 hm5C_site_52781 DeepMRMD:0;iRNA_m5C:0 52782 chr11 59283189 59283189 1 + C A LUSC 59283185 + 59283165 59283205 41 GCCCTTCACTGCCCTCCCCACAGACACTGCCATCTCTGTCA GCCCTTCACTGCCCTCCCCACAGAAACTGCCATCTCTGTCA < 41bp 0.502559159903437 0.844174938996296 0.17405522 0.47486562 prediction 0.683231558185718 Functional Gain - OR4D9 ENSG00000172742 CDS Human protein_coding chr11:59283185 chr11:59283189 nonsynonymous SNV 0.613 1 25 hm5C_associated_SNPs_99637 0 0 0 0 0 unknown 0.500231643284995 0.500231643921878 0 1.27376553749059e-09 hm5C_site_52782 DeepMRMD:0;iRNA_m5C:1.27376553749059e-09 52783 chr11 66290971 66290971 1 + C A STAD 66290967 + 66290947 66290987 41 ACTGCATCGAGCTGAGCGCCCAGCCTGTGGGACTTATCCGG ACTGCATCGAGCTGAGCGCCCAGCATGTGGGACTTATCCGG < 41bp 0.46950540741432 0.841571588486975 0.13137218 0.12876555 prediction 0.683143176973951 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66290967 chr11:66290971 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99638 0 0 1 0 1 membrane 0.500231643509629 0.500231643921092 0 8.22926837784621e-10 hm5C_site_52783 DeepMRMD:0;iRNA_m5C:8.22926837784621e-10 52784 chr6 133783563 133783563 1 + C A LUAD 133783559 + 133783539 133783579 41 GTATTCGGGGATGCAGCAGCCAGCCGTCTACACAGCCTACT GTATTCGGGGATGCAGCAGCCAGCAGTCTACACAGCCTACT < 41bp 0.475967072133287 0.841569772663495 0.30388486 0.3154602 prediction 0.68313954532699 Functional Gain - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783559 chr6:133783563 synonymous SNV . 0 25 hm5C_associated_SNPs_99639 0 0 0 0 2 Cytosol 0.500231643921124 0.500231643921142 0 3.64153152077051e-14 hm5C_site_52784 DeepMRMD:0;iRNA_m5C:3.64153152077051e-14 52785 chr17 34313665 34313665 1 + G T COAD 34313669 - 34313649 34313689 41 CAGCATGAAGATCTCCGTGGCTGCCATTCCCTTCTTCCTCC CAGCATGAAGATCTCCGTGGCTGCAATTCCCTTCTTCCTCC < 41bp 0.47154566898958 0.841537682150462 0.059710175 0.14684546 prediction 0.683075364300924 Functional Gain - CCL14 ENSG00000213494;ENSG00000266956 CDS Human other chr17:34313669 chr17:34313665 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99640 0 0 0 0 2 exosome 0.500231643921092 0.500231643921176 0 1.67199587508549e-13 hm5C_site_52785 DeepMRMD:0;iRNA_m5C:1.67199587508549e-13 52786 chr12 108604034 108604034 1 + C A LUAD 108604030 + 108604010 108604050 41 GGCAGCGTGTGCGGCGGCGCCAACCGCCTCTCTGTCTACCG GGCAGCGTGTGCGGCGGCGCCAACAGCCTCTCTGTCTACCG < 41bp 0.47173769352213 0.84151846552672 0.30601597 0.43917298 prediction 0.683036931053441 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108604030 chr12:108604034 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_99641 0 0 0 0 1 Endoplasmic reticulum 0.500231657079601 0.500184614599517 0 0 hm5C_site_52786 DeepMRMD:0;iRNA_m5C:0 52787 chr2 69049842 69049842 1 + C A rs543805277 69049838 + 69049818 69049858 41 AAGCCAGTGCACTCTCTTCCCAAGCCTGTGACTCCAAGGGA AAGCCAGTGCACTCTCTTCCCAAGACTGTGACTCCAAGGGA < 41bp 0.516963056150982 0.858474719963273 0.1967068 0.28544217 prediction 0.683023327624584 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69049838 chr2:69049842 nonsynonymous SNV 0.262 1 25 hm5C_associated_SNPs_99642 0 0 0 0 0 chromatin 0.500231643918258 0.500231643921092 0 5.66968694215575e-12 hm5C_site_52787 DeepMRMD:0;iRNA_m5C:5.66968694215575e-12 52788 chr17 16340127 16340127 1 + C A UCEC 16340123 + 16340103 16340143 41 GAACTCTCGAGAACCCTGTCCTGGCTTCCCCTCCCAAGGAG GAACTCTCGAGAACCCTGTCCTGGATTCCCCTCCCAAGGAG < 41bp 0.490104976778994 0.841502956648139 0.18554547 0.27961063 prediction 0.683005913296278 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16340123 chr17:16340127 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_99643 0 0 1 0 1 Endoplasmic reticulum 0.500231643921091 0.500231643921092 0 1.99840144432528e-15 hm5C_site_52788 DeepMRMD:0;iRNA_m5C:1.99840144432528e-15 52789 chr17 32954018 32954018 1 + T G BLCA 32954015 + 32953995 32954035 41 GGGAAGTGCTCAGCATCCTCCTCTATCTGGCCCCCAACTCC GGGAAGTGCTCAGCATCCTCCTCGATCTGGCCCCCAACTCC < 41bp 0.501964586611501 0.843450961027324 0.9301021 0.6771018 prediction 0.682972748831647 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32954015 chr17:32954018 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_99644 0 0 1 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52789 DeepMRMD:0;iRNA_m5C:0 52790 chr17 78092544 78092544 1 + C A UCEC 78092540 + 78092520 78092560 41 TGTCCTGGGCGTGGCCACGGCGCCCCAGCAGGTCCTCTCCA TGTCCTGGGCGTGGCCACGGCGCCACAGCAGGTCCTCTCCA < 41bp 0.458753692973149 0.841468195874996 0.6706013 0.84351814 prediction 0.682936391749992 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78092540 chr17:78092544 synonymous SNV . 0 25 hm5C_associated_SNPs_99645 0 0 1 0 1 Endoplasmic reticulum 0.500231643862203 0.500231643915882 0.34583368 1.07357900347438e-10 hm5C_site_52790 DeepMRMD:0.34583368;iRNA_m5C:1.07357900347438e-10 52791 chr17 74382561 74382561 1 + C A LUSC 74382557 + 74382537 74382577 41 CTCCCAGCAGGCTCTGGCAACGCGCTGGCAGCTTCCTTGAA CTCCCAGCAGGCTCTGGCAACGCGATGGCAGCTTCCTTGAA < 41bp 0.527525741823898 0.868932423233635 0.08952063 0.2732793 prediction 0.682813362819474 Functional Gain - SPHK1 ENSG00000176170 CDS Human protein_coding chr17:74382557 chr17:74382561 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_99646 0 0 1 0 2 nucleolus 0.500231642536998 0.500231643921089 0 2.76818057365347e-09 hm5C_site_52791 DeepMRMD:0;iRNA_m5C:2.76818057365347e-09 52792 chr18 47107821 47107821 1 + C A GBM 47107817 + 47107797 47107837 41 TGGTAAAATGTGAGCATGAGCGAGCCGTCCACCTCTTTGTT TGGTAAAATGTGAGCATGAGCGAGACGTCCACCTCTTTGTT < 41bp 0.521317743550692 0.862691087031726 0.7656785 0.68313336 prediction 0.682746686962068 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47107817 chr18:47107821 nonsynonymous SNV 0.351 5 25 hm5C_associated_SNPs_99647 0 0 0 0 1 Nucleus 0.500231643922512 0.500231644749382 0 1.65374069993618e-09 hm5C_site_52792 DeepMRMD:0;iRNA_m5C:1.65374069993618e-09 52793 chr9 126128584 126128584 1 + C A COAD 126128580 + 126128560 126128600 41 GGTGCTGGAGTGCGCATCGGCGCCCTGCGAGCACAACGCGT GGTGCTGGAGTGCGCATCGGCGCCATGCGAGCACAACGCGT < 41bp 0.517588124371637 0.858935151532836 0.3524158 0.34157443 prediction 0.682694054322399 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126128580 chr9:126128584 synonymous SNV . 0 25 hm5C_associated_SNPs_99648 0 0 0 0 2 exosome 0.500231643921111 0.50023164395534 0 6.84585721444364e-11 hm5C_site_52793 DeepMRMD:0;iRNA_m5C:6.84585721444364e-11 52794 chr12 119968845 119968845 1 + C A SARC 119968841 + 119968821 119968861 41 CTGAGGATTTGGGAACTGTGCTCCCCTGACATCGCTGTGGC CTGAGGATTTGGGAACTGTGCTCCACTGACATCGCTGTGGC < 41bp 0.450069820435182 0.841314455645072 0.29827672 0.71249187 prediction 0.682628911290144 Functional Gain - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119968841 chr12:119968845 nonsynonymous SNV 0.760 4 25 hm5C_associated_SNPs_99649 0 0 0 0 1 exosome 0.500231644014256 0.500231643608238 0.42498374 0 hm5C_site_52794 DeepMRMD:0.42498374;iRNA_m5C:0 52795 chr19 58988663 58988663 1 + C A STAD 58988659 + 58988639 58988679 41 CCTTGAGGAGCCTGAGACTGCCCGCCTCCGCTTCCGAGGGT CCTTGAGGAGCCTGAGACTGCCCGACTCCGCTTCCGAGGGT < 41bp 0.516794060450974 0.858090755670716 0.15936697 0.2003442 prediction 0.682593390439484 Functional Gain - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58988659 chr19:58988663 synonymous SNV . 0 25 hm5C_associated_SNPs_99650 0 0 0 0 0 nucleolus 0.500231643921092 0.500231643921092 0 0 hm5C_site_52795 DeepMRMD:0;iRNA_m5C:0 52796 chr15 74220000 74220000 1 + C A rs41429348 74219996 + 74219976 74220016 41 CGGCTTCGAGCAGGCCTACCCTGACCCCGGTCCCGAGGCGG CGGCTTCGAGCAGGCCTACCCTGAACCCGGTCCCGAGGCGG < 41bp 0.504833748798939 0.846105781551798 0.33445284 0.43814483 prediction 0.682544065505718 Functional Gain - LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74219996 chr15:74220000 nonsynonymous SNV 0.015 1 25 hm5C_associated_SNPs_99651 0 0 0 0 0 exosome 0.500231643913597 0.500231643921092 0 1.49908974123036e-11 hm5C_site_52796 DeepMRMD:0;iRNA_m5C:1.49908974123036e-11 52797 chr14 20295778 20295778 1 + C A rs11621883 20295774 + 20295754 20295794 41 AAAGTCAGACCCTGGGCTCACAGCCCCCCTCTATTTCTTTC AAAGTCAGACCCTGGGCTCACAGCACCCCTCTATTTCTTTC < 41bp 0.500412519306814 0.841621014133808 0.006505698 0.0012903214 prediction 0.682416989653988 Functional Gain - OR4N2 ENSG00000176294 CDS Human protein_coding chr14:20295774 chr14:20295778 synonymous SNV . 0 25 hm5C_associated_SNPs_99652 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_52797 DeepMRMD:0;iRNA_m5C:0 52798 chr17 72366781 72366781 1 + C A UCEC 72366777 + 72366757 72366797 41 GTGTGTGGCTGGCGTCATCCCTGTCATCTACTACAGTGTCC GTGTGTGGCTGGCGTCATCCCTGTAATCTACTACAGTGTCC < 41bp 0.463931731699346 0.841201744715821 0.18155134 0.5826387 prediction 0.682403489431642 Functional Gain - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72366777 chr17:72366781 synonymous SNV . 0 25 hm5C_associated_SNPs_99653 0 0 0 0 1 exosome 0.500231895749551 0.500231643921041 0.1652774 0 hm5C_site_52798 DeepMRMD:0.1652774;iRNA_m5C:0 52799 chr19 15839673 15839673 1 + C A COAD 15839669 + 15839649 15839689 41 CCCCACTCTCAGGAGGGTGACACCCTGATGGCCACCACCTA CCCCACTCTCAGGAGGGTGACACCATGATGGCCACCACCTA < 41bp 0.513299478399891 0.854469122029243 0.02348888 0.18268594 prediction 0.682339287258704 Functional Gain - OR10H2 ENSG00000171942 CDS Human protein_coding chr19:15839669 chr19:15839673 nonsynonymous SNV 0.006 3 25 hm5C_associated_SNPs_99654 0 0 0 0 0 unknown 0.50023164380685 0.500231633110491 0 0 hm5C_site_52799 DeepMRMD:0;iRNA_m5C:0 52800 chrX 48545194 48545194 1 + T G GBM 48545191 + 48545171 48545211 41 CCCTCCAGTGGGTCCGCTCTCCCTGGGGCTGGCGACAGTGG CCCTCCAGTGGGTCCGCTCTCCCGGGGGCTGGCGACAGTGG < 41bp 0.478959737475459 0.841144456111482 0.12025702 0.9303484 prediction 0.682288912222964 Functional Gain - WAS ENSG00000015285 CDS Human protein_coding chrX:48545191 chrX:48545194 nonsynonymous SNV 0.623 3 24 hm5C_associated_SNPs_99655 0 0 1 0 1 Endoplasmic reticulum 0.500231643921079 0.50023164179052 0.8606968 0 hm5C_site_52800 DeepMRMD:0.8606968;iRNA_m5C:0 52801 chr10 12131081 12131081 1 + T G rs3740015 12131078 + 12131058 12131098 41 ACCTGACCTCCTCTGTGGACCTGTACTTTGGGGCGCACCAT ACCTGACCTCCTCTGTGGACCTGGACTTTGGGGCGCACCAT < 41bp 0.48267598297003 0.841138229290382 0.6682426 0.90452653 prediction 0.682276458580765 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12131078 chr10:12131081 nonsynonymous SNV 0.934 0 24 hm5C_associated_SNPs_99656 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.47256786 0 hm5C_site_52801 DeepMRMD:0.47256786;iRNA_m5C:0 52802 chrX 47583296 47583296 1 + C A UCEC 47583292 + 47583272 47583312 41 TCTTTTGCGCCTCCTGCAGGCGGCCCATCTCTAAGCGTGTC TCTTTTGCGCCTCCTGCAGGCGGCACATCTCTAAGCGTGTC < 41bp 0.473710083467313 0.840992658916645 0.049725324 0.098430604 prediction 0.681985317833289 Functional Gain - CXXC1P1 ENSG00000187893 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47583292 chrX:47583296 . . 0 25 hm5C_associated_SNPs_99657 0 0 0 0 0 unknown 0.500231643921092 0.500231647552536 0 7.26288784669293e-09 hm5C_site_52802 DeepMRMD:0;iRNA_m5C:7.26288784669293e-09 52803 chr5 35876346 35876346 1 + C A LUAD 35876342 + 35876322 35876362 41 GGGAATGTCAGTGCATGTGACGCCCCTATTCTCTCCTCTTC GGGAATGTCAGTGCATGTGACGCCACTATTCTCTCCTCTTC < 41bp 0.485137199087197 0.840962505674758 0.10501614 0.18915418 prediction 0.681925011349515 Functional Gain - IL7R ENSG00000168685 CDS Human protein_coding chr5:35876342 chr5:35876346 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99658 0 0 0 1 0 Endoplasmic reticulum 0.50013297859026 0.500231612544275 0 0.000197267908029763 hm5C_site_52803 DeepMRMD:0;iRNA_m5C:0.000197267908029763 52804 chr10 103912207 103912207 1 + C A OV 103912203 + 103912183 103912223 41 ATTCGCCGCGTGGTTCCCAGCGACCTGTATCCCCTCGTGCT ATTCGCCGCGTGGTTCCCAGCGACATGTATCCCCTCGTGCT < 41bp 0.490429725153082 0.840916452878446 0.10713163 0.24240214 prediction 0.681832905756891 Functional Gain - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103912203 chr10:103912207 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_99659 0 0 1 0 1 Nucleus 0.500231643599209 0.500231643913366 0 6.28314511530448e-10 hm5C_site_52804 DeepMRMD:0;iRNA_m5C:6.28314511530448e-10 52805 chr1 209933484 209933484 1 + C A STAD 209933480 + 209933460 209933500 41 AGGCAAGAGATCCGTGAAAGCCGCCGCTGCCGTCCCAATGT AGGCAAGAGATCCGTGAAAGCCGCAGCTGCCGTCCCAATGT < 41bp 0.527354128516378 0.868266194712868 0.39318648 0.5340554 prediction 0.681824132392982 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209933480 chr1:209933484 nonsynonymous SNV 0.982 2 25 hm5C_associated_SNPs_99660 0 0 0 0 0 exosome 0.500231514850001 0.500231643842091 0.0681107999999999 2.57984179574677e-07 hm5C_site_52805 DeepMRMD:0.0681107999999999;iRNA_m5C:2.57984179574677e-07 52806 chr22 39387497 39387497 1 + C A rs149274572 39387493 + 39387473 39387513 41 GGGGCTGTGCCGGGGAAGTGCGTGCGTTCCTTCAGGAGAAC GGGGCTGTGCCGGGGAAGTGCGTGAGTTCCTTCAGGAGAAC < 41bp 0.513904214311154 0.854810430174102 0.5017984 0.56574166 prediction 0.681812431725894 Functional Gain - APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39387493 chr22:39387497 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99661 0 0 0 0 1 exosome 0.500231640923457 0.50023164502308 0.12788652 8.19924705908193e-09 hm5C_site_52806 DeepMRMD:0.12788652;iRNA_m5C:8.19924705908193e-09 52807 chr3 112064051 112064051 1 + C A LUAD 112064047 + 112064027 112064067 41 ACCATCACCTTCTGGAATATCACCCTGGAGGATGAAGGGTG ACCATCACCTTCTGGAATATCACCATGGAGGATGAAGGGTG < 41bp 0.547472105499417 0.888347514656226 0.03257519 0.24237755 prediction 0.681750818313618 Functional Gain - CD200 ENSG00000091972 CDS Human protein_coding chr3:112064047 chr3:112064051 nonsynonymous SNV 0.808 0 25 hm5C_associated_SNPs_99662 0 0 0 0 1 Endoplasmic reticulum 0.500289757741786 0.499759267159709 0 0 hm5C_site_52807 DeepMRMD:0;iRNA_m5C:0 52808 chr11 123894265 123894265 1 + C A LUAD 123894261 + 123894241 123894281 41 GCACTATTTGTGTGATGCACCGCCCATCCTGAAACTGGCCT GCACTATTTGTGTGATGCACCGCCAATCCTGAAACTGGCCT < 41bp 0.519036525334836 0.859911148491815 0.052526206 0.5216058 prediction 0.681749246313958 Functional Gain - OR10G9 ENSG00000236981 CDS Human protein_coding chr11:123894261 chr11:123894265 synonymous SNV . 0 25 hm5C_associated_SNPs_99663 0 0 0 0 0 unknown 0.500233595827366 0.500238068487806 0.0432116 8.94532087980515e-06 hm5C_site_52808 DeepMRMD:0.0432116;iRNA_m5C:8.94532087980515e-06 52809 chr7 94293250 94293250 1 + C A LUSC 94293246 + 94293226 94293266 41 TTCGTGACAAGCATGATGACCGGCCGTGCTGCCCGTTGGGC TTCGTGACAAGCATGATGACCGGCAGTGCTGCCCGTTGGGC < 41bp 0.469068299521264 0.840834597162289 0.32833898 0.38527644 prediction 0.681669194324579 Functional Gain - PEG10 ENSG00000242265 CDS Human protein_coding chr7:94293246 chr7:94293250 nonsynonymous SNV 0.949 3 25 hm5C_associated_SNPs_99664 0 0 1 0 0 Endoplasmic reticulum 0.500231646836694 0.500231643586142 0 0 hm5C_site_52809 DeepMRMD:0;iRNA_m5C:0 52810 chr1 43778257 43778257 1 + C A BLCA 43778253 + 43778233 43778273 41 CCGGCCTCGCCCCCTGCACACGTGCTTCTGCCCCCCAGTGG CCGGCCTCGCCCCCTGCACACGTGATTCTGCCCCCCAGTGG < 41bp 0.493847981903771 0.840806062287424 0.39584392 0.6258922 prediction 0.681612124574848 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43778253 chr1:43778257 nonsynonymous SNV 0.276 0 25 hm5C_associated_SNPs_99665 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.2517844 0 hm5C_site_52810 DeepMRMD:0.2517844;iRNA_m5C:0 52811 chr15 33023237 33023237 1 + C A READ 33023233 + 33023213 33023253 41 TGCAACAGTCGCACCATCATCAACCGCTTCTGTTACGGCCA TGCAACAGTCGCACCATCATCAACAGCTTCTGTTACGGCCA < 41bp 0.529678945539951 0.870484373453519 0.21131691 0.16079262 prediction 0.681610855827136 Functional Gain - GREM1 ENSG00000166923 CDS Human protein_coding chr15:33023233 chr15:33023237 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99666 0 0 0 0 0 exosome 0.500210681478297 0.500231699208568 0 4.20354605414897e-05 hm5C_site_52811 DeepMRMD:0;iRNA_m5C:4.20354605414897e-05 52812 chr19 42265959 42265959 1 + C A COAD 42265955 + 42265935 42265975 41 TCTGAACCTCTCCTGCCACGCAGCCTCTAACCCACCTGCAC TCTGAACCTCTCCTGCCACGCAGCATCTAACCCACCTGCAC < 41bp 0.479001767905164 0.840786465845371 0.20962355 0.31553084 prediction 0.681572931690741 Functional Gain - CEACAM6 ENSG00000086548 CDS Human protein_coding chr19:42265955 chr19:42265959 synonymous SNV . 0 25 hm5C_associated_SNPs_99667 0 0 0 0 1 Ribosome 0.50023164392131 0.500231627418563 0 0 hm5C_site_52812 DeepMRMD:0;iRNA_m5C:0 52813 chrX 46434135 46434135 1 + C A UCEC 46434131 + 46434111 46434151 41 ATCAAGGACGTGCGCCTGCTCGATCTGGGCGTGCTGGTGCC ATCAAGGACGTGCGCCTGCTCGATATGGGCGTGCTGGTGCC < 41bp 0.489606127037971 0.840781406164931 0.26474226 0.38921416 prediction 0.681562812329862 Functional Gain - CHST7 ENSG00000147119 CDS Human protein_coding chrX:46434131 chrX:46434135 nonsynonymous SNV 0.984 4 25 hm5C_associated_SNPs_99668 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921093 0 1.99840144432528e-15 hm5C_site_52813 DeepMRMD:0;iRNA_m5C:1.99840144432528e-15 52814 chr3 46944036 46944036 1 + T G COAD 46944033 + 46944013 46944053 41 CAGGAAGCTGCTCAAATCCACGCTGGTGCTCATGCCCCTCT CAGGAAGCTGCTCAAATCCACGCGGGTGCTCATGCCCCTCT < 41bp 0.514640183635048 0.855401436948929 0.24568337 0.87316453 prediction 0.681522506627762 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46944033 chr3:46944036 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_99669 0 0 0 0 1 exosome 0.500231695391455 0.500231643682503 0.74632906 0 hm5C_site_52814 DeepMRMD:0.74632906;iRNA_m5C:0 52815 chr6 109274546 109274546 1 + C A LUSC 109274542 + 109274522 109274562 41 CGGGGATAGTGGGCCTGCTCCTGACCACGCTGGGTGAGAAC CGGGGATAGTGGGCCTGCTCCTGAACACGCTGGGTGAGAAC < 41bp 0.525537712103888 0.866246687656815 0.61532474 0.78787106 prediction 0.681417951105856 Functional Gain - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109274542 chr6:109274546 nonsynonymous SNV 0.520 0 25 hm5C_associated_SNPs_99670 0 0 0 0 1 exosome 0.500231643736189 0.500231644458081 0.34509264 1.44378420330327e-09 hm5C_site_52815 DeepMRMD:0.34509264;iRNA_m5C:1.44378420330327e-09 52816 chr16 31341460 31341460 1 + C A BLCA 31341456 + 31341436 31341476 41 TGCCCTCTCACTCCGACTTTCTGGCTGAGCTTCGGAAGGCC TGCCCTCTCACTCCGACTTTCTGGATGAGCTTCGGAAGGCC < 41bp 0.465529886153245 0.840703163877662 0.29977795 0.59465516 prediction 0.681406327755325 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31341456 chr16:31341460 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_99671 0 0 0 0 2 Endoplasmic reticulum 0.500231643936039 0.500231643865376 0.18931032 0 hm5C_site_52816 DeepMRMD:0.18931032;iRNA_m5C:0 52817 chr17 51900842 51900842 1 + C A LUAD 51900838 + 51900818 51900858 41 ATGAAGCAGAAAAAGTCTCCCTGCCTCTGGGAAATCCAGAA ATGAAGCAGAAAAAGTCTCCCTGCATCTGGGAAATCCAGAA < 41bp 0.466552569455774 0.840674130649856 0.065466434 0.11816347 prediction 0.681348261299711 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51900838 chr17:51900842 nonsynonymous SNV 0.310 1 25 hm5C_associated_SNPs_99672 0 0 0 0 0 exosome 0.500231643927881 0.500231643927204 0 0 hm5C_site_52817 DeepMRMD:0;iRNA_m5C:0 52818 chrX 77378707 77378707 1 + T G UCEC 77378704 + 77378684 77378724 41 CTGTGTAGATTGGCACTTCTCTGTTTGATGAAGAGGGAGCC CTGTGTAGATTGGCACTTCTCTGGTTGATGAAGAGGGAGCC < 41bp 0.495045530479647 0.840656891752374 0.03525114 0.1283746 prediction 0.681313783504748 Functional Gain - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77378704 chrX:77378707 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_99673 0 0 1 2 1 Ribosome 0.500231690079412 0.500230167161398 0 0 hm5C_site_52818 DeepMRMD:0;iRNA_m5C:0 52819 chr14 23848306 23848306 1 + C A STAD 23848302 + 23848282 23848322 41 GTCTCCTTTGCAGCTGTGACCTCCCGGGACGGAGCTGCCAT GTCTCCTTTGCAGCTGTGACCTCCAGGGACGGAGCTGCCAT < 41bp 0.543216675300531 0.883861767597302 0.06344971 0.94692516 prediction 0.681290184593541 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848302 chr14:23848306 synonymous SNV . 0 25 hm5C_associated_SNPs_99674 0 0 0 0 2 exosome 0.50023169211705 0.500231628389199 0.89385032 0 hm5C_site_52819 DeepMRMD:0.89385032;iRNA_m5C:0 52820 chr19 16060663 16060663 1 + C A READ 16060659 + 16060639 16060679 41 CTTGATGGCCACCACCTATACTGTCTTCACCCCCTTCCTTA CTTGATGGCCACCACCTATACTGTATTCACCCCCTTCCTTA < 41bp 0.504341682838473 0.844985756703287 0.02371496 0.021902561 prediction 0.681288147729629 Functional Gain - OR10H4 ENSG00000176231 CDS Human protein_coding chr19:16060659 chr19:16060663 synonymous SNV . 0 25 hm5C_associated_SNPs_99675 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_52820 DeepMRMD:0;iRNA_m5C:0 52821 chr17 34062334 34062334 1 + C A rs139238337 34062330 + 34062310 34062350 41 CCACCGCCCGCCGCCTTTACCTGCCTGCTGTCGTCATGAAC CCACCGCCCGCCGCCTTTACCTGCATGCTGTCGTCATGAAC < 41bp 0.461690136912404 0.840622563387799 0.33789378 0.42848545 prediction 0.681245126775597 Functional Gain - RASL10B ENSG00000141150 CDS Human other chr17:34062330 chr17:34062334 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99676 0 0 0 0 1 insoluble cytoplasm 0.500231643216483 0.500231644848636 0 3.26430793506916e-09 hm5C_site_52821 DeepMRMD:0;iRNA_m5C:3.26430793506916e-09 52822 chr10 73115972 73115972 1 + C A LGG 73115968 + 73115948 73115988 41 CTCGTGCTCTGCATGGGACTCTACCTGCTGCTGTCCAGGCT CTCGTGCTCTGCATGGGACTCTACATGCTGCTGTCCAGGCT < 41bp 0.446342099563013 0.840619887405544 0.35101554 0.92844653 prediction 0.681239774811087 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115968 chr10:73115972 nonsynonymous SNV 0.622 3 25 hm5C_associated_SNPs_99677 0 0 0 0 2 chromatin 0.500231643869498 0.500231643972079 0.85689306 2.05161887478766e-10 hm5C_site_52822 DeepMRMD:0.85689306;iRNA_m5C:2.05161887478766e-10 52823 chr1 240256602 240256602 1 + C A LUSC 240256598 + 240256578 240256618 41 ACGCCCCCGCGGCCGCTTCCCTGCCCGGCAGCCCCGCGCCT ACGCCCCCGCGGCCGCTTCCCTGCACGGCAGCCCCGCGCCT < 41bp 0.491082382041083 0.840610156011769 0.30371755 0.32963276 prediction 0.681220312023539 Functional Gain - FMN2 ENSG00000155816 CDS Human protein_coding chr1:240256598 chr1:240256602 nonsynonymous SNV 0.063 2 25 hm5C_associated_SNPs_99678 0 0 0 0 0 Endoplasmic reticulum 0.50023164392109 0.500231643921092 0 5.32907051820075e-15 hm5C_site_52823 DeepMRMD:0;iRNA_m5C:5.32907051820075e-15 52824 chr11 51515834 51515834 1 + C A rs61890422 51515830 + 51515810 51515850 41 TGTGATCTGAACCCTTTGCTCAACCTCGCCTGCACTGACAC TGTGATCTGAACCCTTTGCTCAACATCGCCTGCACTGACAC < 41bp 0.489247571902779 0.8405810181287 0.46919578 0.52241975 prediction 0.6811620362574 Functional Gain - OR4C46 ENSG00000185926 CDS Human protein_coding chr11:51515830 chr11:51515834 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99679 0 0 0 0 0 unknown 0.500231643919107 0.500231643878826 0.0448394999999999 0 hm5C_site_52824 DeepMRMD:0.0448394999999999;iRNA_m5C:0 52825 chr20 43561020 43561020 1 + T G rs556015963 43561017 + 43560997 43561037 41 TGCATACTATGGCTGTGGCCCAGTGACACCCACCCAGCCTG TGCATACTATGGCTGTGGCCCAGGGACACCCACCCAGCCTG < 41bp 0.479357788356341 0.840573899620763 0.35129267 0.9328369 prediction 0.681147799241525 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43561017 chr20:43561020 nonsynonymous SNV 0.002 0 24 hm5C_associated_SNPs_99680 0 0 1 0 2 chromatin 0.50023164392676 0.500231645305427 0.8656738 2.75733325061367e-09 hm5C_site_52825 DeepMRMD:0.8656738;iRNA_m5C:2.75733325061367e-09 52826 chr10 45869784 45869784 1 + C A KIRP 45869780 + 45869760 45869800 41 CAGCCAGTGGTTCGCCGGCACTGACGACTACATCTACCTCA CAGCCAGTGGTTCGCCGGCACTGAAGACTACATCTACCTCA < 41bp 0.486717156722601 0.84055984516019 0.009233147 0.027876109 prediction 0.68111969032038 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45869780 chr10:45869784 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_99681 0 0 0 0 1 Cytosol 0.500231644978424 0.500229883233476 0 0 hm5C_site_52826 DeepMRMD:0;iRNA_m5C:0 52827 chr9 33240248 33240248 1 + C A STAD 33240244 + 33240224 33240264 41 GGTAATCGCCCTGGCCTTGGCTGCCCTCCTTGTTGTGGACA GGTAATCGCCCTGGCCTTGGCTGCACTCCTTGTTGTGGACA < 41bp 0.478669719969571 0.840555203502328 0.08380887 0.15257934 prediction 0.681110407004657 Functional Gain - SPINK4 ENSG00000122711 CDS Human protein_coding chr9:33240244 chr9:33240248 synonymous SNV . 0 25 hm5C_associated_SNPs_99682 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_52827 DeepMRMD:0;iRNA_m5C:0 52828 chr15 79585881 79585881 1 + C A KIRC 79585877 + 79585857 79585897 41 CCCCAATATCCAAGATAAGTCTGGCAAGACTGCCCTCATCC CCCCAATATCCAAGATAAGTCTGGAAAGACTGCCCTCATCC < 41bp 0.502566515210658 0.843103380745117 0.07055333 0.16223818 prediction 0.681073731068919 Functional Gain - ANKRD34C ENSG00000235711 CDS Human protein_coding chr15:79585877 chr15:79585881 synonymous SNV . 0 25 hm5C_associated_SNPs_99683 0 0 0 0 0 unknown 0.500231632286086 0.500219439841639 0 0 hm5C_site_52828 DeepMRMD:0;iRNA_m5C:0 52829 chr19 51361810 51361810 1 + C A UCEC 51361806 + 51361786 51361826 41 CCTCAGAAGGTGACCAAGTTCATGCTGTGTGCTGGACGCTG CCTCAGAAGGTGACCAAGTTCATGATGTGTGCTGGACGCTG < 41bp 0.526691119143106 0.867226145729614 0.25791287 0.2893906 prediction 0.681070053173016 Functional Gain - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51361806 chr19:51361810 nonsynonymous SNV 0.075 3 25 hm5C_associated_SNPs_99684 0 0 0 0 2 Cytosol 0.500231643921093 0.500231643921166 0 1.46771483855446e-13 hm5C_site_52829 DeepMRMD:0;iRNA_m5C:1.46771483855446e-13 52830 chr19 51628373 51628373 1 + C A LUAD 51628369 + 51628349 51628389 41 CCCTGCTCCTTCTCCTACCCCTCGCATGGCTGGATTTACCC CCCTGCTCCTTCTCCTACCCCTCGAATGGCTGGATTTACCC < 41bp 0.45399482268765 0.840532761406043 0.3237396 0.92843455 prediction 0.681065522812086 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51628369 chr19:51628373 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99685 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.8568691 0 hm5C_site_52830 DeepMRMD:0.8568691;iRNA_m5C:0 52831 chr11 5474886 5474886 1 + T G LUSC 5474883 + 5474863 5474903 41 GTGCGAGTGGAGCCCAGCCTCCATGAGCCCATGTACTACTT GTGCGAGTGGAGCCCAGCCTCCAGGAGCCCATGTACTACTT < 41bp 0.499703744573435 0.840466889011923 0.034229696 0.19733939 prediction 0.680933778023847 Functional Gain - OR51I2 ENSG00000187918 CDS Human protein_coding chr11:5474883 chr11:5474886 nonsynonymous SNV 0.001 4 24 hm5C_associated_SNPs_99686 0 0 0 0 0 nucleus 0.500231641812476 0.500231643921088 0 4.21722368137978e-09 hm5C_site_52831 DeepMRMD:0;iRNA_m5C:4.21722368137978e-09 52832 chr20 30617623 30617623 1 + C A LGG 30617619 + 30617599 30617639 41 CTGCTGAAGCTCTACGGAGACCGGCGCAAGTTCCTCCTCCT CTGCTGAAGCTCTACGGAGACCGGAGCAAGTTCCTCCTCCT < 41bp 0.486904706648931 0.840430135669612 0.7351075 0.8375608 prediction 0.680860271339224 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30617619 chr20:30617623 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_99687 0 0 0 0 1 exosome 0.500231644148463 0.500231643920095 0.2049066 0 hm5C_site_52832 DeepMRMD:0.2049066;iRNA_m5C:0 52833 chr5 40681348 40681348 1 + T G UCEC 40681345 + 40681325 40681365 41 TCGCCACGTACATGAAGGGCCAATGGCCCGGGGGCCAGCCG TCGCCACGTACATGAAGGGCCAAGGGCCCGGGGGCCAGCCG < 41bp 0.517904546382729 0.858277511281579 0.09482741 0.30458936 prediction 0.680745929797699 Functional Gain - PTGER4 ENSG00000171522 CDS Human protein_coding chr5:40681345 chr5:40681348 nonsynonymous SNV 0.994 2 24 hm5C_associated_SNPs_99688 0 0 0 0 0 Cytosol 0.500231643921234 0.500231704577886 0 1.21313304290993e-07 hm5C_site_52833 DeepMRMD:0;iRNA_m5C:1.21313304290993e-07 52834 chr10 118969353 118969353 1 + C A rs363360 118969349 + 118969329 118969369 41 TGGAGCTGTTTGAGAGATCTCATGCGCTAGAGAAACAGAAC TGGAGCTGTTTGAGAGATCTCATGAGCTAGAGAAACAGAAC < 41bp 0.486432574098136 0.840328623320722 0.23969012 0.39034885 prediction 0.680657246641444 Functional Gain - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118969349 chr10:118969353 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_99689 0 0 0 0 0 unknown 0.500231027171412 0.500231643669043 0 1.23299526122445e-06 hm5C_site_52834 DeepMRMD:0;iRNA_m5C:1.23299526122445e-06 52835 chrX 89177557 89177557 1 + C A KIRC 89177553 + 89177533 89177573 41 GTCCAGACAATGTACAAAGCCTGCCCCTGTGGCCCTTGCCA GTCCAGACAATGTACAAAGCCTGCACCTGTGGCCCTTGCCA < 41bp 0.474372412426799 0.840307686633012 0.08167717 0.12298164 prediction 0.680615373266024 Functional Gain - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177553 chrX:89177557 nonsynonymous SNV 0.008 3 25 hm5C_associated_SNPs_99690 0 0 0 0 0 exosome 0.500231643921085 0.50023164392037 0 0 hm5C_site_52835 DeepMRMD:0;iRNA_m5C:0 52836 chr10 91143696 91143696 1 + C A UCEC 91143692 + 91143672 91143712 41 TTTCTCTGCACGTCCTAAAACGAGCTGTCAGGCTAAATCCA TTTCTCTGCACGTCCTAAAACGAGATGTCAGGCTAAATCCA < 41bp 0.518996360891421 0.859287622863474 0.8972888 0.8953479 prediction 0.680582523944106 Functional Gain - IFIT1B ENSG00000204010 CDS Human protein_coding chr10:91143692 chr10:91143696 nonsynonymous SNV 0.210 3 25 hm5C_associated_SNPs_99691 0 0 0 0 0 exosome 0.500231646274093 0.500231643868022 0 0 hm5C_site_52836 DeepMRMD:0;iRNA_m5C:0 52837 chr1 156848968 156848968 1 + C A rs6338 156848964 + 156848944 156848984 41 TGGTGGGGAGGATGTGGCTCCAGGCCCCCTGGGTCTGGGGC TGGTGGGGAGGATGTGGCTCCAGGACCCCTGGGTCTGGGGC < 41bp 0.51113973794715 0.851414444558399 0.9287549 0.9245583 prediction 0.680549413222497 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156848964 chr1:156848968 synonymous SNV . 0 25 hm5C_associated_SNPs_99692 0 0 0 0 1 chromatin 0.500231643921657 0.500231643966752 0 9.01896335392394e-11 hm5C_site_52837 DeepMRMD:0;iRNA_m5C:9.01896335392394e-11 52838 chr8 21905750 21905750 1 + C A COAD 21905746 + 21905726 21905766 41 CCAAGCGCACACGGCGGCCCCAGCCCCTCACGTAGTCTGGG CCAAGCGCACACGGCGGCCCCAGCACCTCACGTAGTCTGGG < 41bp 0.51469826966826 0.854967420749082 0.500006 0.77860653 prediction 0.680538302161644 Functional Gain - FGF17 ENSG00000158815 CDS Human protein_coding chr8:21905746 chr8:21905750 nonsynonymous SNV 0.987 3 25 hm5C_associated_SNPs_99693 0 0 0 0 0 chromatin 0.500231643886357 0.500231249686628 0.55720106 0 hm5C_site_52838 DeepMRMD:0.55720106;iRNA_m5C:0 52839 chr2 158114708 158114708 1 + T G SKCM 158114705 + 158114685 158114725 41 GCAGCTCTCCGCCTCTCATTCAGTGAGATCAACACTCGGGT GCAGCTCTCCGCCTCTCATTCAGGGAGATCAACACTCGGGT < 41bp 0.490460221809693 0.840162883730696 0.79919887 0.9510875 prediction 0.680325767461393 Functional Gain - GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158114705 chr2:158114708 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_99694 0 0 0 0 0 Exosome 0.500231645018805 0.500231643921045 0.30377726 0 hm5C_site_52839 DeepMRMD:0.30377726;iRNA_m5C:0 52840 chr17 59489896 59489896 1 + C A rs61764069 59489892 + 59489872 59489912 41 GCCTCGGGCCTCGGCAACTCCTCACAGGTCCACGAGATGGC GCCTCGGGCCTCGGCAACTCCTCAAAGGTCCACGAGATGGC < 41bp 0.477596730085251 0.840160756099801 0.10431039 0.7743701 prediction 0.680321512199603 Functional Gain - C17orf82 ENSG00000187013 CDS Human lincRNA chr17:59489892 chr17:59489896 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_99695 0 0 0 0 0 unknown 0.500231639863255 0.500231643921102 0.5487402 8.11569389469469e-09 hm5C_site_52840 DeepMRMD:0.5487402;iRNA_m5C:8.11569389469469e-09 52841 chrX 13618152 13618152 1 + C A LUSC 13618148 + 13618128 13618168 41 CCAACACAGATGTGTGAATACACACGGAAGCTACAAGTGCT CCAACACAGATGTGTGAATACACAAGGAAGCTACAAGTGCT < 41bp 0.463134192375082 0.840136661531303 0.0441975 0.09156293 prediction 0.680273323062607 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13618148 chrX:13618152 nonsynonymous SNV 0.770 5 25 hm5C_associated_SNPs_99696 0 0 0 0 2 exosome 0.500231643935259 0.500238466543427 0 1.36452163357337e-05 hm5C_site_52841 DeepMRMD:0;iRNA_m5C:1.36452163357337e-05 52842 chr2 103324831 103324831 1 + C A LUAD 103324827 + 103324807 103324847 41 CCTTCTCTCTAAAGACCAGTCTGGCTCAGAGAGGGAAGACA CCTTCTCTCTAAAGACCAGTCTGGATCAGAGAGGGAAGACA < 41bp 0.476289160261097 0.840121780059632 0.017859101 0.022298038 prediction 0.680243560119265 Functional Gain - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103324827 chr2:103324831 synonymous SNV . 0 25 hm5C_associated_SNPs_99697 0 0 0 0 0 Ribosome 0.500231653227233 0.500231620527706 0 0 hm5C_site_52842 DeepMRMD:0;iRNA_m5C:0 52843 chr6 46623671 46623671 1 + C A PRAD 46623667 + 46623647 46623687 41 GGGAGACGGTGCAAGAGAATCTGCCCCCTATAGGGGAATGG GGGAGACGGTGCAAGAGAATCTGCACCCTATAGGGGAATGG < 41bp 0.514828292881219 0.854909231592261 0.22385791 0.31326708 prediction 0.680161877422083 Functional Gain - SLC25A27 ENSG00000153291 CDS Human protein_coding chr6:46623667 chr6:46623671 synonymous SNV . 0 25 hm5C_associated_SNPs_99698 0 0 1 0 2 exosome 0.500231643929886 0.500232661353591 0 2.03484741168047e-06 hm5C_site_52843 DeepMRMD:0;iRNA_m5C:2.03484741168047e-06 52844 chr22 41077895 41077895 1 + C A rs149604804 41077891 + 41077871 41077911 41 TTCGCGCTGTCAGCAACGCTCAGACGGCTGACGAGGAGAGG TTCGCGCTGTCAGCAACGCTCAGAAGGCTGACGAGGAGAGG < 41bp 0.508173373281783 0.848247705223352 0.8326775 0.8788232 prediction 0.680148663883138 Functional Gain - MCHR1 ENSG00000128285 CDS Human protein_coding chr22:41077891 chr22:41077895 nonsynonymous SNV 0.942 0 25 hm5C_associated_SNPs_99699 0 0 0 0 0 exosome 0.50023164254984 0.500231643920779 0.0922914000000001 2.74187783588786e-09 hm5C_site_52844 DeepMRMD:0.0922914000000001;iRNA_m5C:2.74187783588786e-09 52845 chr6 348194 348194 1 + C A LUAD 348190 + 348170 348210 41 TGGGAGGATGCCCTGCACACCGTGCGTGCTGGGAGATCCTG TGGGAGGATGCCCTGCACACCGTGAGTGCTGGGAGATCCTG < 41bp 0.5247916460045 0.864864100582752 0.07505882 0.11775613 prediction 0.680144909156505 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348190 chr6:348194 stopgain 0.839 4 25 hm5C_associated_SNPs_99700 0 0 0 0 2 Ribosome 0.50023164375165 0.500231643921093 0 3.38886918527237e-10 hm5C_site_52845 DeepMRMD:0;iRNA_m5C:3.38886918527237e-10 52846 chr5 35876451 35876451 1 + C A COAD 35876447 + 35876427 35876467 41 AGCCTTGGGACTACAAACAGCACGCTGCCCCCTCCATTTTC AGCCTTGGGACTACAAACAGCACGATGCCCCCTCCATTTTC < 41bp 0.505947797866933 0.845998545766032 0.018987685 0.0667696 prediction 0.680101495798197 Functional Gain - IL7R ENSG00000168685 CDS Human protein_coding chr5:35876447 chr5:35876451 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99701 0 0 0 1 0 Endoplasmic reticulum 0.500231643921093 0.500231643920972 0 0 hm5C_site_52846 DeepMRMD:0;iRNA_m5C:0 52847 chrX 70824111 70824111 1 + T G STAD 70824108 + 70824088 70824128 41 GATTCGGATGTTCCCGATGACAATAGTGATGATTTGGAAGT GATTCGGATGTTCCCGATGACAAGAGTGATGATTTGGAAGT < 41bp 0.50491822462572 0.844950583788373 0.2096189 0.46589708 prediction 0.680064718325307 Functional Gain - GCNA ENSG00000147174 CDS Human protein_coding chrX:70824108 chrX:70824111 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_99702 0 0 1 0 0 unknown 0.500231640306896 0.50023164391995 0 7.22610726811013e-09 hm5C_site_52847 DeepMRMD:0;iRNA_m5C:7.22610726811013e-09 52848 chr17 4496465 4496465 1 + C A rs368707338 4496461 + 4496441 4496481 41 CACGCCCTGGACTCCCAGTCCTAGCGGTATGAGCTGGAGAG CACGCCCTGGACTCCCAGTCCTAGAGGTATGAGCTGGAGAG < 41bp 0.470372198565891 0.839985060074883 0.09764707 0.36593646 prediction 0.679970120149767 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4496461 chr17:4496465 nonsynonymous SNV 0.018 2 25 hm5C_associated_SNPs_99703 0 0 0 0 1 insoluble cytoplasm 0.500231643921092 0.500231643921092 0 0 hm5C_site_52848 DeepMRMD:0;iRNA_m5C:0 52849 chr11 59283102 59283102 1 + C A LUAD 59283098 + 59283078 59283118 41 AGGCAGGAGGAAAGCCATCTCCACCTGCACCTCCCACATCA AGGCAGGAGGAAAGCCATCTCCACATGCACCTCCCACATCA < 41bp 0.516221116383288 0.856174750570345 0.119080484 0.82743156 prediction 0.679907268374113 Functional Gain - OR4D9 ENSG00000172742 CDS Human protein_coding chr11:59283098 chr11:59283102 synonymous SNV . 0 25 hm5C_associated_SNPs_99704 0 0 0 0 0 unknown 0.500231643920772 0.500231644252937 0.65486312 6.64329924404683e-10 hm5C_site_52849 DeepMRMD:0.65486312;iRNA_m5C:6.64329924404683e-10 52850 chr17 7950034 7950034 1 + C A rs61730345 7950030 + 7950010 7950050 41 ACCCTGCACATCAACACACTCGCCCGGGAGCTGCTTATCGT ACCCTGCACATCAACACACTCGCCAGGGAGCTGCTTATCGT < 41bp 0.449772874686504 0.839935468557038 0.06250015 0.2617572 prediction 0.679870937114077 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7950030 chr17:7950034 synonymous SNV . 0 25 hm5C_associated_SNPs_99705 0 0 0 0 1 exosome 0.500231643921093 0.500210077760929 0 0 hm5C_site_52850 DeepMRMD:0;iRNA_m5C:0 52851 chr4 156135369 156135369 1 + C A CESC 156135365 + 156135345 156135385 41 CCAACTTTTTCATTGCCAATCTGGCTGTGGCAGATCTTTTG CCAACTTTTTCATTGCCAATCTGGATGTGGCAGATCTTTTG < 41bp 0.479513577351724 0.839935228636404 0.09106523 0.13179904 prediction 0.679870457272808 Functional Gain - NPY2R ENSG00000185149 CDS Human protein_coding chr4:156135365 chr4:156135369 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_99706 0 0 0 0 0 unknown 0.500231806502085 0.500232415777745 0 1.21855131984816e-06 hm5C_site_52851 DeepMRMD:0;iRNA_m5C:1.21855131984816e-06 52852 chr8 23147827 23147827 1 + C A rs150268828 23147823 + 23147803 23147843 41 GGAGACATGGTGGAGATGGCCACACGGTTTGGGTCCACCCT GGAGACATGGTGGAGATGGCCACAAGGTTTGGGTCCACCCT < 41bp 0.470411638710429 0.83992742286599 0.61229736 0.33823276 prediction 0.67985484573198 Functional Gain - R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23147823 chr8:23147827 synonymous SNV . 0 25 hm5C_associated_SNPs_99707 0 0 1 0 0 Cytosol 0.500231643921087 0.500231643921092 0 1.04360964314765e-14 hm5C_site_52852 DeepMRMD:0;iRNA_m5C:1.04360964314765e-14 52853 chr12 6883843 6883843 1 + C A UCEC 6883839 + 6883819 6883859 41 CTTCAGCCGCCCTGACCGCCCAGCCTCTGTGCATTGGTTCC CTTCAGCCGCCCTGACCGCCCAGCATCTGTGCATTGGTTCC < 41bp 0.463787403994781 0.839922954349992 0.06784701 0.12054145 prediction 0.679845908699985 Functional Gain - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6883839 chr12:6883843 synonymous SNV . 0 25 hm5C_associated_SNPs_99708 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52853 DeepMRMD:0;iRNA_m5C:0 52854 chr2 102626246 102626246 1 + C A SKCM 102626242 + 102626222 102626262 41 AGGACGGTGCTCTGTGGCTTCTGCCAGCCTTGCAGGAGGAC AGGACGGTGCTCTGTGGCTTCTGCAAGCCTTGCAGGAGGAC < 41bp 0.445832596787303 0.839880419605907 0.16369304 0.24047482 prediction 0.679760839211814 Functional Gain - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102626242 chr2:102626246 nonsynonymous SNV 0.090 2 25 hm5C_associated_SNPs_99709 0 0 0 0 2 Endoplasmic reticulum 0.500231640778051 0.500231645536999 0 9.51789669301206e-09 hm5C_site_52854 DeepMRMD:0;iRNA_m5C:9.51789669301206e-09 52855 chr1 180897675 180897675 1 + C A LUAD 180897671 + 180897651 180897691 41 AGGACCCGGCCCCTCCGTGCCAGCCATGACATCGTGCCCAC AGGACCCGGCCCCTCCGTGCCAGCAATGACATCGTGCCCAC < 41bp 0.541228598385079 0.881050503468862 0.115546554 0.07273167 prediction 0.679643810167567 Functional Gain - KIAA1614 ENSG00000135835 CDS Human protein_coding chr1:180897671 chr1:180897675 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99710 0 0 0 0 1 nucleus 0.500231643921089 0.500231643915136 0 0 hm5C_site_52855 DeepMRMD:0;iRNA_m5C:0 52856 chr11 55872781 55872781 1 + C A HNSC 55872777 + 55872757 55872797 41 CTAAAACCTTAGCGAACTTACTGACTTCCAACTATATTTCC CTAAAACCTTAGCGAACTTACTGAATTCCAACTATATTTCC < 41bp 0.501475934559106 0.84129255697171 0.08091971 0.06539756 prediction 0.679633244825208 Functional Gain - OR8H2 ENSG00000181767 CDS Human protein_coding chr11:55872777 chr11:55872781 nonsynonymous SNV 0.768 1 25 hm5C_associated_SNPs_99711 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 8.88178419700125e-16 hm5C_site_52856 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 52857 chr3 183951077 183951077 1 + C A UCEC 183951073 + 183951053 183951093 41 CCCTGCACAGCAGCCGGGAGCTGCCCTCAAGGCCTGACGGG CCCTGCACAGCAGCCGGGAGCTGCACTCAAGGCCTGACGGG < 41bp 0.467700704103662 0.839798993880686 0.2731782 0.41938078 prediction 0.679597987761371 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183951073 chr3:183951077 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99712 0 0 0 0 0 exosome 0.50023164392115 0.500233540952759 0 3.79406321826536e-06 hm5C_site_52857 DeepMRMD:0;iRNA_m5C:3.79406321826536e-06 52858 chr7 130027809 130027809 1 + C A LUSC 130027805 + 130027785 130027825 41 CCACAGCCAAGGAGACGTGGCTGGCGCTTCTGACCATCATG CCACAGCCAAGGAGACGTGGCTGGAGCTTCTGACCATCATG < 41bp 0.481516320498356 0.839777823349697 0.14830562 0.146202 prediction 0.679555646699393 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130027805 chr7:130027809 nonsynonymous SNV 0.369 4 25 hm5C_associated_SNPs_99713 0 0 0 0 0 Endoplasmic reticulum 0.500231643466351 0.500231643920833 0 9.08964015167157e-10 hm5C_site_52858 DeepMRMD:0;iRNA_m5C:9.08964015167157e-10 52859 chr1 161495268 161495268 1 + C A rs534863825 161495264 + 161495244 161495284 41 CGCACAGCCTGTGAGCGCGCCAAGCGCACCCTGTCCTCCAG CGCACAGCCTGTGAGCGCGCCAAGAGCACCCTGTCCTCCAG < 41bp 0.482799007427804 0.83976379762317 0.2729791 0.36575842 prediction 0.67952759524634 Functional Gain - HSPA6 ENSG00000173110 CDS Human protein_coding chr1:161495264 chr1:161495268 nonsynonymous SNV 0.530 3 25 hm5C_associated_SNPs_99714 0 0 0 0 0 exosome 0.500231413321461 0.500231457489042 0 8.83351616298711e-08 hm5C_site_52859 DeepMRMD:0;iRNA_m5C:8.83351616298711e-08 52860 chr12 107080755 107080755 1 + C A LUSC 107080751 + 107080731 107080771 41 AGCTGCCTGGGTGAGTGAGACGGGCAAGAAAGAAGTGAGCA AGCTGCCTGGGTGAGTGAGACGGGAAAGAAAGAAGTGAGCA < 41bp 0.533822146025667 0.873564527693214 0.8584131 0.7621964 prediction 0.679484763335094 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107080751 chr12:107080755 synonymous SNV . 0 25 hm5C_associated_SNPs_99715 0 0 0 0 1 nucleoplasm 0.500231643921178 0.500231643921093 0 0 hm5C_site_52860 DeepMRMD:0;iRNA_m5C:0 52861 chr11 55872956 55872956 1 + T G HNSC 55872953 + 55872933 55872973 41 AGGCTCTGCCTCGCTCTCATCACTGGGCCTTATGTGATTGG AGGCTCTGCCTCGCTCTCATCACGGGGCCTTATGTGATTGG < 41bp 0.499499002206013 0.839728976871054 0.20647791 0.89829135 prediction 0.679457953742109 Functional Gain - OR8H2 ENSG00000181767 CDS Human protein_coding chr11:55872953 chr11:55872956 synonymous SNV . 0 24 hm5C_associated_SNPs_99716 0 0 0 0 0 unknown 0.500186217319282 0.500230926469129 0.7965827 8.94182996939996e-05 hm5C_site_52861 DeepMRMD:0.7965827;iRNA_m5C:8.94182996939996e-05 52862 chr16 336905 336905 1 + C A STAD 336901 + 336881 336921 41 TCCTGGACAACGGGGGCGTGCTGCCCACGGAGGAGCCCCCG TCCTGGACAACGGGGGCGTGCTGCACACGGAGGAGCCCCCG < 41bp 0.536307595121331 0.876026426802396 0.6457437 0.74246264 prediction 0.67943766336213 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:336901 chr16:336905 nonsynonymous SNV 0.008 3 25 hm5C_associated_SNPs_99717 0 0 0 0 2 nucleolus 0.500232103286034 0.50023977562866 0.19343788 1.53446852524386e-05 hm5C_site_52862 DeepMRMD:0.19343788;iRNA_m5C:1.53446852524386e-05 52863 chr9 36118810 36118810 1 + T G STAD 36118807 + 36118787 36118827 41 CACAATGGTGAGACCTACAGCAGTGTGTGTGCTGCCTACTC CACAATGGTGAGACCTACAGCAGGGTGTGTGCTGCCTACTC < 41bp 0.515159678655812 0.854849843790425 0.86634475 0.9068415 prediction 0.679380330269227 Functional Gain - RECK ENSG00000122707 CDS Human protein_coding chr9:36118807 chr9:36118810 nonsynonymous SNV 0.970 2 24 hm5C_associated_SNPs_99718 0 0 0 0 1 exosome 0.500248420770104 0.500231707166297 0.0809934999999999 0 hm5C_site_52863 DeepMRMD:0.0809934999999999;iRNA_m5C:0 52864 chr22 31667167 31667167 1 + C A PRAD 31667163 + 31667143 31667183 41 ATCATCCACCGGGATCTGAACTCGCACAACTGCCTCATCAA ATCATCCACCGGGATCTGAACTCGAACAACTGCCTCATCAA < 41bp 0.438406790809898 0.839674884491421 0.6494405 0.8835846 prediction 0.679349768982841 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31667163 chr22:31667167 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99719 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921079 0.4682882 0 hm5C_site_52864 DeepMRMD:0.4682882;iRNA_m5C:0 52865 chr10 104678831 104678831 1 + C A rs189652428 104678827 + 104678807 104678847 41 CCTGTGCACGTCGCTCTCCACGCCCGCCCTGGGCGCCGGCG CCTGTGCACGTCGCTCTCCACGCCAGCCCTGGGCGCCGGCG < 41bp 0.535175140338966 0.874839663281519 0.0480569 0.23659796 prediction 0.679329045885107 Functional Gain - CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104678827 chr10:104678831 synonymous SNV . 0 25 hm5C_associated_SNPs_99720 0 0 0 0 0 Ribosome 0.500231640983965 0.500231668676577 0 5.53852239626451e-08 hm5C_site_52865 DeepMRMD:0;iRNA_m5C:5.53852239626451e-08 52866 chr4 111398004 111398004 1 + C A rs375739854 111398000 + 111397980 111398020 41 GGGAGACCAGGATCACCCGGCTCCCGGAGCTGAAGAGGCCC GGGAGACCAGGATCACCCGGCTCCAGGAGCTGAAGAGGCCC < 41bp 0.466920677340862 0.839640438182498 0.5442403 0.92119884 prediction 0.679280876364996 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111398000 chr4:111398004 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_99721 0 0 0 0 0 exosome 0.500231643921094 0.500231643915311 0.75391708 0 hm5C_site_52866 DeepMRMD:0.75391708;iRNA_m5C:0 52867 chr12 1937354 1937354 1 + C A rs190717324 1937350 + 1937330 1937370 41 AGCAGCCCTGGGCAGAGGGGCAGGCTCGCCCTGCAGTGGAG AGCAGCCCTGGGCAGAGGGGCAGGATCGCCCTGCAGTGGAG < 41bp 0.501606963555449 0.841216385208388 0.8740859 0.8853781 prediction 0.679218843305878 Functional Gain - LRTM2 ENSG00000166159 CDS Human protein_coding chr12:1937350 chr12:1937354 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_99722 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.0225843999999999 0 hm5C_site_52867 DeepMRMD:0.0225843999999999;iRNA_m5C:0 52868 chr22 39355689 39355689 1 + C A LUAD 39355685 + 39355665 39355705 41 CAGCACAGGGGCTTTCTACACAACCAGGTGACCGACCCAGC CAGCACAGGGGCTTTCTACACAACAAGGTGACCGACCCAGC < 41bp 0.527647604864714 0.867248042761279 0.0054090023 0.0207434 prediction 0.67920087579313 Functional Gain - APOBEC3A;APOBEC3A_B ENSG00000128383 CDS Human protein_coding chr22:39355685 chr22:39355689 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99723 0 0 0 0 2 unknown 0.500231643945827 0.500231643923918 0 0 hm5C_site_52868 DeepMRMD:0;iRNA_m5C:0 52869 chr6 160769703 160769703 1 + C A rs8187716 160769699 + 160769679 160769719 41 CGCCTCCCGCGGCCCAGAGCCCCCCGAGCGCCGCGGCCGCT CGCCTCCCGCGGCCCAGAGCCCCCAGAGCGCCGCGGCCGCT < 41bp 0.483099236098422 0.839594005261213 0.35350528 0.8102118 prediction 0.679188010522426 Functional Gain - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160769699 chr6:160769703 synonymous SNV . 0 25 hm5C_associated_SNPs_99724 0 0 0 0 0 Endoplasmic reticulum 0.500231643921039 0.500231643891907 0.6204236 0 hm5C_site_52869 DeepMRMD:0.6204236;iRNA_m5C:0 52870 chr1 192627481 192627481 1 + C A LUAD 192627477 + 192627457 192627497 41 AGCTTTATAAGATTTACATCCAGCCACAGTCCCCTAGAGAG AGCTTTATAAGATTTACATCCAGCAACAGTCCCCTAGAGAG < 41bp 0.523756505581467 0.863324716144906 0.42642236 0.2898419 prediction 0.679136421126878 Functional Gain - RGS13 ENSG00000127074 CDS Human protein_coding chr1:192627477 chr1:192627481 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99725 0 0 0 0 1 nucleus 0.500231643921092 0.500231646762868 0 5.68355051910885e-09 hm5C_site_52870 DeepMRMD:0;iRNA_m5C:5.68355051910885e-09 52871 chr17 48174888 48174888 1 + C A rs35550088 48174884 + 48174864 48174904 41 AAAGAGATCAACCTGCTTCCCGACCGAGTGCTGAGCACACC AAAGAGATCAACCTGCTTCCCGACAGAGTGCTGAGCACACC < 41bp 0.533068555052807 0.872636279315719 0.10282099 0.041104496 prediction 0.679135448525824 Functional Gain - PDK2 ENSG00000005882 CDS Human protein_coding chr17:48174884 chr17:48174888 synonymous SNV . 0 25 hm5C_associated_SNPs_99726 0 0 1 0 1 Ribosome 0.500231643921095 0.500231647926675 0 8.01115951354348e-09 hm5C_site_52871 DeepMRMD:0;iRNA_m5C:8.01115951354348e-09 52872 chrX 120181962 120181962 1 + C A COAD 120181958 + 120181938 120181978 41 GGCTACCGGGCCCAGCACAGCCAGCACCGCACGCCCTGCAA GGCTACCGGGCCCAGCACAGCCAGAACCGCACGCCCTGCAA < 41bp 0.505262357551127 0.844808876654183 0.097266465 0.27576768 prediction 0.67909303820611 Functional Gain - GLUD2 ENSG00000182890 CDS Human protein_coding chrX:120181958 chrX:120181962 nonsynonymous SNV 0.951 2 25 hm5C_associated_SNPs_99727 0 0 1 0 0 Ribosome 0.50023158568933 0.500224637901084 0 0 hm5C_site_52872 DeepMRMD:0;iRNA_m5C:0 52873 chr1 186276568 186276568 1 + C A LUAD 186276564 + 186276544 186276584 41 CCCAAGGAGCCTGCACCCACCACCCCCAAGAAGCCTGCCCC CCCAAGGAGCCTGCACCCACCACCACCAAGAAGCCTGCCCC < 41bp 0.466739395242882 0.839543070572362 0.12160987 0.17146575 prediction 0.679086141144724 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276564 chr1:186276568 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99728 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643921112 0 3.88578058618805e-14 hm5C_site_52873 DeepMRMD:0;iRNA_m5C:3.88578058618805e-14 52874 chr1 22924351 22924351 1 + C A THCA 22924347 + 22924327 22924367 41 ATCCGCCTCGAGGGTGTCGTCACCCGTGGTAGGTGCCGGGC ATCCGCCTCGAGGGTGTCGTCACCAGTGGTAGGTGCCGGGC < 41bp 0.540481719917632 0.879947797491185 0.2469753 0.2632928 prediction 0.678932155147105 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22924347 chr1:22924351 nonsynonymous SNV 0.906 3 25 hm5C_associated_SNPs_99729 0 0 0 0 1 exosome 0.50023164392109 0.500231644266462 0 6.90743018338935e-10 hm5C_site_52874 DeepMRMD:0;iRNA_m5C:6.90743018338935e-10 52875 chr1 240256760 240256760 1 + C A COAD 240256756 + 240256736 240256776 41 ATCAAGAGGCGGCCGGAACCCTCCCTGAGCCGAGGGTCCAG ATCAAGAGGCGGCCGGAACCCTCCATGAGCCGAGGGTCCAG < 41bp 0.474537985082091 0.839465219161951 0.3830656 0.96961194 prediction 0.678930438323901 Functional Gain - FMN2 ENSG00000155816 CDS Human protein_coding chr1:240256756 chr1:240256760 nonsynonymous SNV 0.048 0 25 hm5C_associated_SNPs_99730 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.93922388 0 hm5C_site_52875 DeepMRMD:0.93922388;iRNA_m5C:0 52876 chr12 7054995 7054995 1 + C A COAD 7054991 + 7054971 7055011 41 AGCCCAGGATCCTGAGATCGCCAGCCTGTCAGGCAAGCTGA AGCCCAGGATCCTGAGATCGCCAGACTGTCAGGCAAGCTGA < 41bp 0.499720815238846 0.839446557968678 0.55235463 0.89382654 prediction 0.678893115937355 Functional Gain - C12orf57 ENSG00000111678 CDS Human protein_coding chr12:7054991 chr12:7054995 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_99731 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921094 0.68294382 3.5527136788005e-15 hm5C_site_52876 DeepMRMD:0.68294382;iRNA_m5C:3.5527136788005e-15 52877 chr17 19284434 19284434 1 + C A GBM 19284430 + 19284410 19284450 41 CTATATCCAGAGCTTGCCACCACGCCAGCCTGTGCCCTGGG CTATATCCAGAGCTTGCCACCACGACAGCCTGTGCCCTGGG < 41bp 0.467029913124304 0.839431406712284 0.39782566 0.50505084 prediction 0.678862813424567 Functional Gain - MAPK7 ENSG00000166484 CDS Human protein_coding chr17:19284430 chr17:19284434 synonymous SNV . 0 25 hm5C_associated_SNPs_99732 0 0 0 0 0 exosome 0.500231369077742 0.500231643920907 0.01010168 5.49686331563493e-07 hm5C_site_52877 DeepMRMD:0.01010168;iRNA_m5C:5.49686331563493e-07 52878 chr1 117307156 117307156 1 + C A rs375969497 117307152 + 117307132 117307172 41 ATTGGCATATGTGGAGGAGGCAGCCTCTTGATGGTCTTTGT ATTGGCATATGTGGAGGAGGCAGCATCTTGATGGTCTTTGT < 41bp 0.508571680405218 0.847959903337029 0.5019795 0.64023393 prediction 0.678776445863621 Functional Gain - CD2 ENSG00000116824 CDS Human protein_coding chr1:117307152 chr1:117307156 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_99733 0 0 0 0 2 exosome 0.50023164512139 0.500231654086955 0.27650886 1.79311316905739e-08 hm5C_site_52878 DeepMRMD:0.27650886;iRNA_m5C:1.79311316905739e-08 52879 chr22 46684356 46684356 1 + C A UCEC 46684352 + 46684332 46684372 41 GCCAGCGGTGGCAGGATGTCCTGCCTGTGGCCCGGAAGCAC GCCAGCGGTGGCAGGATGTCCTGCATGTGGCCCGGAAGCAC < 41bp 0.545622747849338 0.885000188486699 0.23354998 0.19153881 prediction 0.678754881274723 Functional Gain - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46684352 chr22:46684356 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_99734 0 0 0 0 1 Ribosome 0.500231643921022 0.500231642251142 0 0 hm5C_site_52879 DeepMRMD:0;iRNA_m5C:0 52880 chr10 29578094 29578094 1 + T G UCEC 29578091 + 29578071 29578111 41 CTGTCACCGACTAAGTGGAGCAGTGTTTCTTCCGCAGACTC CTGTCACCGACTAAGTGGAGCAGGGTTTCTTCCGCAGACTC < 41bp 0.520742068008984 0.860036932096959 0.3337415 0.91794276 prediction 0.678589728175949 Functional Gain - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29578091 chr10:29578094 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_99735 0 0 0 0 1 unknown 0.500231643921128 0.500231643921092 0.83588552 0 hm5C_site_52880 DeepMRMD:0.83588552;iRNA_m5C:0 52881 chr4 9784785 9784785 1 + T G CESC 9784782 + 9784762 9784802 41 CCCAGCTGCTGGGGTGCAGCCACTTCTGCTCCCGCACGCCG CCCAGCTGCTGGGGTGCAGCCACGTCTGCTCCCGCACGCCG < 41bp 0.490715530097984 0.839271680750567 0.18185824 0.31834966 prediction 0.678543361501133 Functional Gain - DRD5 ENSG00000169676 CDS Human protein_coding chr4:9784782 chr4:9784785 nonsynonymous SNV 0.577 0 24 hm5C_associated_SNPs_99736 0 0 0 0 0 unknown 0.500231643921082 0.500231643376465 0 0 hm5C_site_52881 DeepMRMD:0;iRNA_m5C:0 52882 chr6 116600879 116600879 1 + G T LUSC 116600883 - 116600863 116600903 41 CACCAGTACCTGAGGCTCCGCGACCAAAGCGAGGCGACACA CACCAGTACCTGAGGCTCCGCGACAAAAGCGAGGCGACACA < 41bp 0.500831294797722 0.840096038321781 0.05083731 0.10541606 prediction 0.678529487048118 Functional Gain - TSPYL1 ENSG00000189241 CDS Human protein_coding chr6:116600883 chr6:116600879 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_99737 0 0 1 0 0 Ribosome 0.500231643921092 0.500231642005789 0 0 hm5C_site_52882 DeepMRMD:0;iRNA_m5C:0 52883 chr11 46403911 46403911 1 + C A BLCA 46403907 + 46403887 46403927 41 GGCCTGGGGGCCCTGCACCCCCAGCAGCAAGGATTGCGGCG GGCCTGGGGGCCCTGCACCCCCAGAAGCAAGGATTGCGGCG < 41bp 0.50100590981387 0.840234098956917 0.13660428 0.117753625 prediction 0.678456378286094 Functional Gain - MDK ENSG00000110492 CDS Human protein_coding chr11:46403907 chr11:46403911 nonsynonymous SNV 0.994 2 25 hm5C_associated_SNPs_99738 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921324 0 4.63629135083465e-13 hm5C_site_52883 DeepMRMD:0;iRNA_m5C:4.63629135083465e-13 52884 chr11 70281279 70281279 1 + C A rs199842991 70281275 + 70281255 70281295 41 AGCTGCGGCAGTAGGGCCCCCAGCCCCCCCCCGGAGCTGCG AGCTGCGGCAGTAGGGCCCCCAGCACCCCCCCGGAGCTGCG < 41bp 0.506670099259512 0.845871745858421 0.27324682 0.21521574 prediction 0.678403293197817 Functional Gain - CTTN ENSG00000085733 UTR3 Human protein_coding chr11:70281275 chr11:70281279 . . 0 25 hm5C_associated_SNPs_99739 0 0 1 0 0 Ribosome 0.500231643921158 0.500231643921316 0 3.16191517413245e-13 hm5C_site_52884 DeepMRMD:0;iRNA_m5C:3.16191517413245e-13 52885 chr8 2092749 2092749 1 + C A rs115393575 2092745 + 2092725 2092765 41 AGGCGTGACCTCCGAGGACTCGGGCAAGTACAGCATCAACA AGGCGTGACCTCCGAGGACTCGGGAAAGTACAGCATCAACA < 41bp 0.515673338012985 0.854833870587994 0.21455577 0.42961627 prediction 0.678321065150019 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2092745 chr8:2092749 synonymous SNV . 0 25 hm5C_associated_SNPs_99740 0 0 0 0 0 exosome 0.500231064360542 0.500231152443304 0 1.76165523724237e-07 hm5C_site_52885 DeepMRMD:0;iRNA_m5C:1.76165523724237e-07 52886 chr22 44967365 44967365 1 + C A UCEC 44967361 + 44967341 44967381 41 GGGACGTCCTGTCAGCAGAGCAGGCTGGACTGGTGAGTTTC GGGACGTCCTGTCAGCAGAGCAGGATGGACTGGTGAGTTTC < 41bp 0.491182012583502 0.839151860403055 0.8945168 0.90415 prediction 0.67830372080611 Functional Gain - LINC00207 ENSG00000187012 ncRNA_exonic Human lincRNA chr22:44967361 chr22:44967365 . . 0 25 hm5C_associated_SNPs_99741 0 0 0 0 1 unknown 0.500231719340367 0.500232525154882 0.0192664 1.6116290308954e-06 hm5C_site_52886 DeepMRMD:0.0192664;iRNA_m5C:1.6116290308954e-06 52887 chr14 20296231 20296231 1 + C A UCEC 20296227 + 20296207 20296247 41 CTTCAACAGTGGCCTGATGACACTCCTGTGCTTTCTGGGGC CTTCAACAGTGGCCTGATGACACTACTGTGCTTTCTGGGGC < 41bp 0.514210276268907 0.853329542138776 0.120684415 0.116503626 prediction 0.678238531739737 Functional Gain - OR4N2 ENSG00000176294 CDS Human protein_coding chr14:20296227 chr14:20296231 synonymous SNV . 0 25 hm5C_associated_SNPs_99742 0 0 0 0 0 unknown 0.500231643934247 0.500231643921846 0 0 hm5C_site_52887 DeepMRMD:0;iRNA_m5C:0 52888 chr2 11053045 11053045 1 + C A LUAD 11053041 + 11053021 11053061 41 GCCGAGGGCCGCTGGCGCCGCTGCCAGAAGTGCGTCTGGAA GCCGAGGGCCGCTGGCGCCGCTGCAAGAAGTGCGTCTGGAA < 41bp 0.517238924484877 0.856357363466884 0.5659094 0.52291954 prediction 0.678236877964014 Functional Gain - KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11053041 chr2:11053045 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99743 0 0 0 0 0 exosome 0.500231643920872 0.500231939130905 0 5.90420065949004e-07 hm5C_site_52888 DeepMRMD:0;iRNA_m5C:5.90420065949004e-07 52889 chr1 3669280 3669280 1 + C A rs202157664 3669276 + 3669256 3669296 41 CAGAGCATGGCCAGCCGGGACGCCCGGTGCCCAGAATGGAA CAGAGCATGGCCAGCCGGGACGCCAGGTGCCCAGAATGGAA < 41bp 0.514768646492132 0.853861343652226 0.331002 0.73948324 prediction 0.678185394320188 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3669276 chr1:3669280 synonymous SNV . 0 25 hm5C_associated_SNPs_99744 0 0 0 0 1 exosome 0.500231643921092 0.5002316439211 0.47896648 1.48769885299771e-14 hm5C_site_52889 DeepMRMD:0.47896648;iRNA_m5C:1.48769885299771e-14 52890 chr1 10535052 10535052 1 + C A rs12068754 10535048 + 10535028 10535068 41 CGTCCTCGGAGCAGGCAGAGCAGCCGAGCCAGGTAAGGGGA CGTCCTCGGAGCAGGCAGAGCAGCAGAGCCAGGTAAGGGGA < 41bp 0.513752501581113 0.852820332247131 0.8998524 0.90415615 prediction 0.678135661332036 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10535048 chr1:10535052 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99745 0 0 1 1 1 Ribosome 0.500231643921092 0.500231643933143 0.0086075000000001 2.41020536861924e-11 hm5C_site_52890 DeepMRMD:0.0086075000000001;iRNA_m5C:2.41020536861924e-11 52891 chr1 53925332 53925332 1 + T G rs376953028 53925329 + 53925309 53925349 41 CGAGGAGGAGCAGGAGGCGGCCCTGTGTGCGCAGGGGCCCA CGAGGAGGAGCAGGAGGCGGCCCGGTGTGCGCAGGGGCCCA < 41bp 0.493455779462082 0.839039169625116 0.668373 0.8842467 prediction 0.678078339250232 Functional Gain - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53925329 chr1:53925332 nonsynonymous SNV 0.006 1 24 hm5C_associated_SNPs_99746 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.4317474 0 hm5C_site_52891 DeepMRMD:0.4317474;iRNA_m5C:0 52892 chr6 155597455 155597455 1 + C A UCEC 155597451 + 155597431 155597471 41 GACTCGACCCACCCACACAGCAGCCTATCTCTAACACACAG GACTCGACCCACCCACACAGCAGCATATCTCTAACACACAG < 41bp 0.472653157199548 0.839033407227521 0.019283473 0.008885235 prediction 0.678066814455042 Functional Gain - CLDN20 ENSG00000171217 CDS Human protein_coding chr6:155597451 chr6:155597455 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_99747 0 0 0 0 0 nucleoplasm 0.500226541144753 0.500231657406182 0 1.02325228579225e-05 hm5C_site_52892 DeepMRMD:0;iRNA_m5C:1.02325228579225e-05 52893 chr20 31604886 31604886 1 + T G SKCM 31604883 + 31604863 31604903 41 TCCAACCTGGTGCAGGGTGTCAATGTCCACCTGGGCACCTT TCCAACCTGGTGCAGGGTGTCAAGGTCCACCTGGGCACCTT < 41bp 0.478217667329286 0.839016569958871 0.045594454 0.8683338 prediction 0.678033139917741 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31604883 chr20:31604886 nonsynonymous SNV 0.509 4 24 hm5C_associated_SNPs_99748 0 0 1 0 2 cytosol 0.500231643921092 0.500231643919278 0.7366676 0 hm5C_site_52893 DeepMRMD:0.7366676;iRNA_m5C:0 52894 chr2 24245382 24245382 1 + T G UCEC 24245379 + 24245359 24245399 41 CGTCCAGGGCCTGGTACTAACTGTCCTGGTGAGGGGGCCTG CGTCCAGGGCCTGGTACTAACTGGCCTGGTGAGGGGGCCTG < 41bp 0.485469894202806 0.839014417831808 0.09478369 0.19817898 prediction 0.678028835663615 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24245379 chr2:24245382 nonsynonymous SNV 0.384 2 24 hm5C_associated_SNPs_99749 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_52894 DeepMRMD:0;iRNA_m5C:0 52895 chr1 159410187 159410187 1 + T G PRAD 159410184 + 159410164 159410204 41 GAAATCCTGACTTTGATTATCAGTGTGCTGGTGCTTGTTGT GAAATCCTGACTTTGATTATCAGGGTGCTGGTGCTTGTTGT < 41bp 0.508671732206191 0.847668949744273 0.27962595 0.9406384 prediction 0.677994435076164 Functional Gain - OR10J1 ENSG00000196184 CDS Human protein_coding chr1:159410184 chr1:159410187 nonsynonymous SNV 0.200 2 24 hm5C_associated_SNPs_99750 0 0 0 0 0 unknown 0.500231651444001 0.500231644936218 0.8812768 0 hm5C_site_52895 DeepMRMD:0.8812768;iRNA_m5C:0 52896 chr2 131487629 131487629 1 + C A LUAD 131487625 + 131487605 131487645 41 CTGGGACTCACACATGGCTCCTGGCAGCTAACAGTGAGGTA CTGGGACTCACACATGGCTCCTGGAAGCTAACAGTGAGGTA < 41bp 0.516598921634286 0.855562460085778 0.10162017 0.08815631 prediction 0.677927076902983 Functional Gain - GPR148 ENSG00000173302 CDS Human protein_coding chr2:131487625 chr2:131487629 nonsynonymous SNV 0.044 2 25 hm5C_associated_SNPs_99751 0 0 0 0 0 unknown 0.500231663667782 0.500231649230467 0 0 hm5C_site_52896 DeepMRMD:0;iRNA_m5C:0 52897 chr1 1219446 1219446 1 + C A COAD 1219442 + 1219422 1219462 41 CATGGACGGGAGAATGGAAGCAGCCACACGGGGGGGCTCTC CATGGACGGGAGAATGGAAGCAGCAACACGGGGGGGCTCTC < 41bp 0.506252414820879 0.845195540640841 0.8810577 0.5472875 prediction 0.677886251639924 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1219442 chr1:1219446 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_99752 0 0 0 0 2 exosome 0.500231643921366 0.500232066926767 0 8.46010801858199e-07 hm5C_site_52897 DeepMRMD:0;iRNA_m5C:8.46010801858199e-07 52898 chr3 119526247 119526247 1 + C A UCEC 119526243 + 119526223 119526263 41 TGTATGTGGGGACAAGGCCACTGGCTATCACTTCAATGTCA TGTATGTGGGGACAAGGCCACTGGATATCACTTCAATGTCA < 41bp 0.457902348792313 0.838930254542337 0.2775154 0.3413605 prediction 0.677860509084673 Functional Gain - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119526243 chr3:119526247 synonymous SNV . 0 25 hm5C_associated_SNPs_99753 0 0 0 0 1 nucleus 0.500231435269959 0.500231655603604 0 4.40667290213526e-07 hm5C_site_52898 DeepMRMD:0;iRNA_m5C:4.40667290213526e-07 52899 chr2 79254179 79254179 1 + C A rs115709602 79254175 + 79254155 79254195 41 CAAAGCTGGCTTGCCAGAAGCGGCCCTCTGGAAAACTGGTG CAAAGCTGGCTTGCCAGAAGCGGCACTCTGGAAAACTGGTG < 41bp 0.482378939384302 0.838921317519817 0.21015063 0.71653825 prediction 0.677842635039634 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254175 chr2:79254179 nonsynonymous SNV 0.970 1 25 hm5C_associated_SNPs_99754 0 0 0 0 1 unknown 0.500231643921092 0.500231643921094 0.4330765 3.10862446895044e-15 hm5C_site_52899 DeepMRMD:0.4330765;iRNA_m5C:3.10862446895044e-15 52900 chr17 79204451 79204451 1 + C A LUSC 79204447 + 79204427 79204467 41 CCTGGGGGAGGAGGTCGCTGCTCCCCAGGGAGGCGATGGCA CCTGGGGGAGGAGGTCGCTGCTCCACAGGGAGGCGATGGCA < 41bp 0.484525626937635 0.838908099530234 0.18803078 0.90908056 prediction 0.677816199060468 Functional Gain - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79204447 chr17:79204451 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_99755 0 0 0 0 0 chromatin 0.500231643935894 0.500231643921118 0.81816112 0 hm5C_site_52900 DeepMRMD:0.81816112;iRNA_m5C:0 52901 chr1 236902635 236902635 1 + C A LUAD 236902631 + 236902611 236902651 41 TGGATTCGTCGCACGATCCCCTGGCTGGAGAACCGGACTCC TGGATTCGTCGCACGATCCCCTGGATGGAGAACCGGACTCC < 41bp 0.465431522409105 0.838897345886255 0.13630834 0.45451257 prediction 0.67779469177251 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236902631 chr1:236902635 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_99756 0 0 1 0 1 chromatin 0.500231643600966 0.500231643919739 0 6.37547126203231e-10 hm5C_site_52901 DeepMRMD:0;iRNA_m5C:6.37547126203231e-10 52902 chr4 95539204 95539204 1 + C A rs141653509 95539200 + 95539180 95539220 41 TTGGCTTCCTCGGTAGCTTCCACACGGAGCATGCCCGAGAG TTGGCTTCCTCGGTAGCTTCCACAAGGAGCATGCCCGAGAG < 41bp 0.4973654061623 0.838771802950466 0.087876946 0.16747311 prediction 0.677543605900932 Functional Gain - PDLIM5 ENSG00000163110 CDS Human protein_coding chr4:95539200 chr4:95539204 synonymous SNV . 0 25 hm5C_associated_SNPs_99757 0 0 1 0 1 Nucleus 0.500231641985602 0.500231643921092 0 3.87098020304677e-09 hm5C_site_52902 DeepMRMD:0;iRNA_m5C:3.87098020304677e-09 52903 chr19 38882740 38882740 1 + C A HNSC 38882736 + 38882716 38882756 41 AGAAGAGCCTGCTGGCTGCGCTGGCCGCACTGGGTCGAGGT AGAAGAGCCTGCTGGCTGCGCTGGACGCACTGGGTCGAGGT < 41bp 0.537719918142665 0.876473016305149 0.23518127 0.33306873 prediction 0.677506196324966 Functional Gain - SPRED3 ENSG00000188766 CDS Human protein_coding chr19:38882736 chr19:38882740 nonsynonymous SNV 0.977 1 25 hm5C_associated_SNPs_99758 0 0 1 0 1 chromatin 0.500231650084996 0.500231704828889 0 1.09487785282525e-07 hm5C_site_52903 DeepMRMD:0;iRNA_m5C:1.09487785282525e-07 52904 chr1 158435698 158435698 1 + C A ESCA 158435694 + 158435674 158435714 41 GCTCCTCTCACTCCTTCCTGCTGGCAGCCATGGGCTATGAT GCTCCTCTCACTCCTTCCTGCTGGAAGCCATGGGCTATGAT < 41bp 0.516671513201784 0.855407202424494 0.16220152 0.22358859 prediction 0.677471378445419 Functional Gain - OR10K1 ENSG00000173285 CDS Human protein_coding chr1:158435694 chr1:158435698 nonsynonymous SNV 0.976 4 25 hm5C_associated_SNPs_99759 0 0 0 0 0 unknown 0.500231643921082 0.500231643921111 0 5.92859095149834e-14 hm5C_site_52904 DeepMRMD:0;iRNA_m5C:5.92859095149834e-14 52905 chr1 24077388 24077388 1 + C A rs142849555 24077384 + 24077364 24077404 41 AGAAGAGCAATTCCCGAAAGCGCCCTCGGGATGCCCTGCAG AGAAGAGCAATTCCCGAAAGCGCCATCGGGATGCCCTGCAG < 41bp 0.546484306940164 0.885123027019528 0.08978593 0.22669503 prediction 0.677277440158728 Functional Gain - ELOA ENSG00000011007 CDS Human protein_coding chr1:24077384 chr1:24077388 nonsynonymous SNV 0.911 1 25 hm5C_associated_SNPs_99760 0 0 1 0 1 unknown 0.500231643921093 0.500231643924933 0 7.68007879514698e-12 hm5C_site_52905 DeepMRMD:0;iRNA_m5C:7.68007879514698e-12 52906 chr14 20344588 20344588 1 + C A LUAD 20344584 + 20344564 20344604 41 CATCACAGTTATAGTGGACCCTCACCTACACTCTCCTATGT CATCACAGTTATAGTGGACCCTCAACTACACTCTCCTATGT < 41bp 0.490699057356475 0.838578128884148 0.009670824 0.31947213 prediction 0.677156257768296 Functional Gain - OR4K2 ENSG00000165762 CDS Human protein_coding chr14:20344584 chr14:20344588 nonsynonymous SNV 0.845 0 25 hm5C_associated_SNPs_99761 0 0 0 0 0 unknown 0.500230364205116 0.500231643806995 0 2.5592037578015e-06 hm5C_site_52906 DeepMRMD:0;iRNA_m5C:2.5592037578015e-06 52907 chr12 9006822 9006822 1 + C A UCEC 9006818 + 9006798 9006838 41 CCCCAAAAGGGCCGAAGTGACACGCTCATCAAGCCAGTTCT CCCCAAAAGGGCCGAAGTGACACGATCATCAAGCCAGTTCT < 41bp 0.535956711865821 0.874500043154492 0.029054672 0.022297591 prediction 0.677086662577342 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9006818 chr12:9006822 nonsynonymous SNV 0.723 0 25 hm5C_associated_SNPs_99762 0 0 0 0 2 exosome 0.500231643921093 0.500231643921086 0 0 hm5C_site_52907 DeepMRMD:0;iRNA_m5C:0 52908 chr3 142841163 142841163 1 + C A LUAD 142841159 + 142841139 142841179 41 AGGTGGAGGAGTTTTGCTACCAGCCCATGGCCGTCCTGGGC AGGTGGAGGAGTTTTGCTACCAGCACATGGCCGTCCTGGGC < 41bp 0.525586401043742 0.864108422642772 0.2854999 0.3532322 prediction 0.67704404319806 Functional Gain - CHST2 ENSG00000175040 CDS Human protein_coding chr3:142841159 chr3:142841163 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_99763 0 0 1 0 0 cytosol 0.500231643921092 0.50023374296286 0 4.19808353524509e-06 hm5C_site_52908 DeepMRMD:0;iRNA_m5C:4.19808353524509e-06 52909 chr13 58208651 58208651 1 + C A COAD 58208647 + 58208627 58208667 41 CCCTTTCTGGGAGGACGTGACGCCCGTGGTGGAGCTGGTGG CCCTTTCTGGGAGGACGTGACGCCAGTGGTGGAGCTGGTGG < 41bp 0.471155076227109 0.838468061458181 0.15249956 0.8142814 prediction 0.676936122916361 Functional Gain - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58208647 chr13:58208651 synonymous SNV . 0 25 hm5C_associated_SNPs_99764 0 0 0 0 0 exosome 0.500231643921073 0.500231643921075 0.6285628 5.32907051820075e-15 hm5C_site_52909 DeepMRMD:0.6285628;iRNA_m5C:5.32907051820075e-15 52910 chr4 187209702 187209702 1 + G T rs5971 187209706 - 187209686 187209726 41 GACCACGTTGGTGTAAACACCTGGCCGCTCCCTTTGAGCAC GACCACGTTGGTGTAAACACCTGGACGCTCCCTTTGAGCAC < 41bp 0.506143276372651 0.844587614649751 0.21259376 0.09920859 prediction 0.676888676554198 Functional Gain - F11 ENSG00000088926 CDS Human protein_coding chr4:187209706 chr4:187209702 synonymous SNV . 0 25 hm5C_associated_SNPs_99765 2 0 0 0 0 cytosol 0.500234339494932 0.500231682269294 0 0 hm5C_site_52910 DeepMRMD:0;iRNA_m5C:0 not specified not specified 52911 chr20 45717947 45717947 1 + C A LUAD 45717943 + 45717923 45717963 41 GAGACACAGACAGGCCGCACCGGGCCTCCGACGGGAAGCTC GAGACACAGACAGGCCGCACCGGGACTCCGACGGGAAGCTC < 41bp 0.527707180114693 0.866146868111254 0.84477305 0.8753637 prediction 0.676879375993123 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45717943 chr20:45717947 nonsynonymous SNV 0.984 2 25 hm5C_associated_SNPs_99766 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231650649147 0.0611812999999999 1.34561100040287e-08 hm5C_site_52911 DeepMRMD:0.0611812999999999;iRNA_m5C:1.34561100040287e-08 52912 chr1 43783064 43783064 1 + C A LUAD 43783060 + 43783040 43783080 41 GGACGGGCTGAAGATGAACGCAGCCATCAAAATGCTGAAAG GGACGGGCTGAAGATGAACGCAGCAATCAAAATGCTGAAAG < 41bp 0.524874915978107 0.863308653786138 0.11883369 0.23141506 prediction 0.676867475616061 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43783060 chr1:43783064 synonymous SNV . 0 25 hm5C_associated_SNPs_99767 0 0 0 0 1 Cytosol 0.500231643921092 0.500231638666892 0 0 hm5C_site_52912 DeepMRMD:0;iRNA_m5C:0 52913 chr8 22267554 22267554 1 + C A STAD 22267550 + 22267530 22267570 41 TGCACAGAGAAAGCGTTTTTCAGCCGTGTGCTCACTTACTT TGCACAGAGAAAGCGTTTTTCAGCAGTGTGCTCACTTACTT < 41bp 0.482680136758152 0.838422467790575 0.45592818 0.60952497 prediction 0.67684493558115 Functional Gain - SLC39A14 ENSG00000104635 CDS Human protein_coding chr8:22267550 chr8:22267554 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_99768 0 0 1 0 1 Endoplasmic reticulum 0.500231645421502 0.500231688967572 0.21904994 8.7092138389977e-08 hm5C_site_52913 DeepMRMD:0.21904994;iRNA_m5C:8.7092138389977e-08 52914 chr17 65021068 65021068 1 + C A LUAD 65021064 + 65021044 65021084 41 ATCGGTGCTGGCAGGATCTACAGCCGCAAGAACAACATCGT ATCGGTGCTGGCAGGATCTACAGCAGCAAGAACAACATCGT < 41bp 0.457551477649899 0.838386607662919 0.32719666 0.20943001 prediction 0.676773215325838 Functional Gain - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65021064 chr17:65021068 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99769 0 0 0 0 2 Endoplasmic reticulum 0.500231643921083 0.500231646026952 0 4.21173740328129e-09 hm5C_site_52914 DeepMRMD:0;iRNA_m5C:4.21173740328129e-09 52915 chr1 40981058 40981058 1 + T G STAD 40981055 + 40981035 40981075 41 ACTTGTCTTCTTGTCTCTAACACTGTCAGACCTCCCAGTTA ACTTGTCTTCTTGTCTCTAACACGGTCAGACCTCCCAGTTA < 41bp 0.493158622853338 0.8383794341752 0.13509217 0.84608173 prediction 0.6767588683504 Functional Gain - EXO5 ENSG00000164002 CDS Human protein_coding chr1:40981055 chr1:40981058 nonsynonymous SNV 0.998 1 24 hm5C_associated_SNPs_99770 0 0 1 0 0 nucleus 0.500231643929201 0.500231643921081 0.69216346 0 hm5C_site_52915 DeepMRMD:0.69216346;iRNA_m5C:0 52916 chr1 248084593 248084593 1 + C A LUAD 248084589 + 248084569 248084609 41 TTGACCGGAAGTAAGGCCATCTCCCGCGCTGGCTGTGGTGC TTGACCGGAAGTAAGGCCATCTCCAGCGCTGGCTGTGGTGC < 41bp 0.470523325781678 0.838357826464164 0.16901866 0.93353784 prediction 0.676715652928328 Functional Gain - OR2T8 ENSG00000177462 CDS Human protein_coding chr1:248084589 chr1:248084593 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99771 0 0 0 0 0 exosome 0.500231643402205 0.500231643585167 0.86707568 3.65923513712119e-10 hm5C_site_52916 DeepMRMD:0.86707568;iRNA_m5C:3.65923513712119e-10 52917 chr3 135789339 135789339 1 + C A KIRC 135789335 + 135789315 135789355 41 TTCAGGATGTGGTGGATACCCACCCTGGTCTCACGTTCCTG TTCAGGATGTGGTGGATACCCACCATGGTCTCACGTTCCTG < 41bp 0.454714804157528 0.838343475248963 0.042517394 0.0769901 prediction 0.676686950497926 Functional Gain - PPP2R3A ENSG00000073711 CDS Human protein_coding chr3:135789335 chr3:135789339 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99772 0 0 0 1 2 chromatin 0.500231643921092 0.500231644326933 0 8.11680500589773e-10 hm5C_site_52917 DeepMRMD:0;iRNA_m5C:8.11680500589773e-10 52918 chrX 128901662 128901662 1 + C A rs41304538 128901658 + 128901638 128901678 41 CATCGATGTCAGCCTGCTGTCTCCCGAGCATGTGAGTGCCC CATCGATGTCAGCCTGCTGTCTCCAGAGCATGTGAGTGCCC < 41bp 0.432187918998204 0.838339057421759 0.071713656 0.93476284 prediction 0.676678114843518 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128901658 chrX:128901662 synonymous SNV . 0 25 hm5C_associated_SNPs_99773 0 0 0 0 2 exosome 0.500231664981292 0.500231668059981 0.86952568 6.15737882903034e-09 hm5C_site_52918 DeepMRMD:0.86952568;iRNA_m5C:6.15737882903034e-09 52919 chr8 24256470 24256470 1 + C A rs2291577 24256466 + 24256446 24256486 41 GGATAAGATAAAGGTGGTGCCCAGCGCAAGCACCACGTTTG GGATAAGATAAAGGTGGTGCCCAGAGCAAGCACCACGTTTG < 41bp 0.481840454082627 0.838313792872535 0.09874499 0.3207396 prediction 0.676627585745071 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256466 chr8:24256470 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99774 0 0 0 0 2 exosome 0.500231644101166 0.500231643999239 0 0 hm5C_site_52919 DeepMRMD:0;iRNA_m5C:0 52920 chr1 43233204 43233204 1 + C A rs201893746 43233200 + 43233180 43233220 41 GAGCCCTGGTGGAGCTCACCCCGACCCCCGGCGGCCTGGCC GAGCCCTGGTGGAGCTCACCCCGAACCCCGGCGGCCTGGCC < 41bp 0.498230331642145 0.838303831317945 0.45769566 0.4095089 prediction 0.676607662635889 Functional Gain - C1orf50 ENSG00000164008 CDS Human protein_coding chr1:43233200 chr1:43233204 nonsynonymous SNV 0.707 0 25 hm5C_associated_SNPs_99775 0 0 1 0 2 Cytosol 0.500231643903527 0.500231643921092 0 3.51298989897941e-11 hm5C_site_52920 DeepMRMD:0;iRNA_m5C:3.51298989897941e-11 52921 chr14 23511574 23511574 1 + C A KIRC 23511570 + 23511550 23511590 41 TGCAGATCCATGGCCCCAGACTGGCCCACGGCACCACCACT TGCAGATCCATGGCCCCAGACTGGACCACGGCACCACCACT < 41bp 0.522690175156027 0.860991038362152 0.24219716 0.28669918 prediction 0.67660172641225 Functional Gain - PSMB11 ENSG00000222028 CDS Human protein_coding chr14:23511570 chr14:23511574 nonsynonymous SNV 0.942 3 25 hm5C_associated_SNPs_99776 0 0 0 0 0 exosome 0.500218175879507 0.500231573888807 0 2.67960186013383e-05 hm5C_site_52921 DeepMRMD:0;iRNA_m5C:2.67960186013383e-05 52922 chr12 32134711 32134711 1 + C A rs140312693 32134707 + 32134687 32134727 41 ACAGCAGTATGCCACGCAAACTGACAAAAGACCTCCTCCTC ACAGCAGTATGCCACGCAAACTGAAAAAAGACCTCCTCCTC < 41bp 0.512609416268701 0.85087515719076 0.085237116 0.28730702 prediction 0.676531481844117 Functional Gain - KIAA1551 ENSG00000174718 CDS Human protein_coding chr12:32134707 chr12:32134711 nonsynonymous SNV 0.074 0 25 hm5C_associated_SNPs_99777 0 0 1 0 0 Cytosol 0.500231643921097 0.500231680184823 0 7.25274524882025e-08 hm5C_site_52922 DeepMRMD:0;iRNA_m5C:7.25274524882025e-08 52923 chr2 132021714 132021714 1 + C A LUAD 132021710 + 132021690 132021730 41 TACCTCATGAAGATCCTCACCGAGCGTGGCTATAGGTTCAC TACCTCATGAAGATCCTCACCGAGAGTGGCTATAGGTTCAC < 41bp 0.481825109200449 0.838217834404387 0.3230925 0.5749091 prediction 0.676435668808774 Functional Gain - POTEE ENSG00000188219 CDS Human protein_coding chr2:132021710 chr2:132021714 nonsynonymous SNV 0.031 3 25 hm5C_associated_SNPs_99778 0 0 0 0 0 chromatin 0.50023164391149 0.500231643433894 0.1498182 0 hm5C_site_52923 DeepMRMD:0.1498182;iRNA_m5C:0 52924 chr6 41011851 41011851 1 + C A LUAD 41011847 + 41011827 41011867 41 ACAGCCTTTGTCCAGTGCACCAGCCTCAGCCCACGGAGAAG ACAGCCTTTGTCCAGTGCACCAGCATCAGCCCACGGAGAAG < 41bp 0.474206468531603 0.838210639802896 0.09490022 0.0900425 prediction 0.676421279605792 Functional Gain - TSPO2 ENSG00000112212 CDS Human protein_coding chr6:41011847 chr6:41011851 nonsynonymous SNV 0.231 2 25 hm5C_associated_SNPs_99779 0 0 0 0 0 exosome 0.500231643921092 0.500231485562916 0 0 hm5C_site_52924 DeepMRMD:0;iRNA_m5C:0 52925 chr8 133913770 133913770 1 + C A LUAD 133913766 + 133913746 133913786 41 CGGAGAAGAGGTGCCTGGGACGCGCGTGACCGGGGGCCAGC CGGAGAAGAGGTGCCTGGGACGCGAGTGACCGGGGGCCAGC < 41bp 0.49731116560971 0.83818301434818 0.40631983 0.6087179 prediction 0.676366028696359 Functional Gain - TG ENSG00000042832 CDS Human protein_coding chr8:133913766 chr8:133913770 synonymous SNV . 0 25 hm5C_associated_SNPs_99780 0 0 0 0 0 Nucleus 0.500231643921076 0.500231643921081 0.2174358 9.10382880192628e-15 hm5C_site_52925 DeepMRMD:0.2174358;iRNA_m5C:9.10382880192628e-15 52926 chr10 103987414 103987414 1 + C A COAD 103987410 + 103987390 103987430 41 TCATTCCCCATAGCCCTGATCTACCTGGTTCTCATCGCTGT TCATTCCCCATAGCCCTGATCTACATGGTTCTCATCGCTGT < 41bp 0.453034546612351 0.838168046100634 0.122676075 0.79956377 prediction 0.676336092201269 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103987410 chr10:103987414 nonsynonymous SNV 0.803 2 25 hm5C_associated_SNPs_99781 0 0 0 0 1 exosome 0.500231643941225 0.500231643366472 0.59912754 0 hm5C_site_52926 DeepMRMD:0.59912754;iRNA_m5C:0 52927 chr17 48614455 48614455 1 + C A LIHC 48614451 + 48614431 48614471 41 TACGGCGAGGACTACAGCCGCTCCCGGGGCTCCCCGTCCTC TACGGCGAGGACTACAGCCGCTCCAGGGGCTCCCCGTCCTC < 41bp 0.442508458954389 0.83815417898071 0.064935625 0.917377 prediction 0.676308357961419 Functional Gain - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48614451 chr17:48614455 synonymous SNV . 0 25 hm5C_associated_SNPs_99782 0 0 0 0 1 Nucleus 0.500231643920514 0.500231643922669 0.834754 4.31099600461948e-12 hm5C_site_52927 DeepMRMD:0.834754;iRNA_m5C:4.31099600461948e-12 52928 chr9 90500444 90500444 1 + C A LUAD 90500440 + 90500420 90500460 41 TTCTGGGGAGACCCCACACCCAAGCACATGGAGGTAGGTGG TTCTGGGGAGACCCCACACCCAAGAACATGGAGGTAGGTGG < 41bp 0.486790841157958 0.838142310957785 0.6039431 0.8370942 prediction 0.676284621915569 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90500440 chr9:90500444 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_99783 0 0 0 0 0 exosome 0.500231643921092 0.500231643921175 0.4663022 1.65201186064223e-13 hm5C_site_52928 DeepMRMD:0.4663022;iRNA_m5C:1.65201186064223e-13 52929 chr1 152957834 152957834 1 + C A CESC 152957830 + 152957810 152957850 41 CCAAAACCAAGGAGCCCTGCCACCCCAAGGTGCCTGAGCCC CCAAAACCAAGGAGCCCTGCCACCACAAGGTGCCTGAGCCC < 41bp 0.54394805211205 0.882053380319704 0.05078754 0.04183349 prediction 0.67621065641531 Functional Gain - SPRR1A ENSG00000169474 CDS Human protein_coding chr1:152957830 chr1:152957834 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_99784 0 0 0 0 0 exosome 0.500231643921092 0.500231643921141 0 9.79216707719388e-14 hm5C_site_52929 DeepMRMD:0;iRNA_m5C:9.79216707719388e-14 52930 chr10 46999114 46999114 1 + T G GBM 46999111 + 46999091 46999131 41 AGCATGAAGCCAGCACGGGCCTCTGGCCCCAAGGCGCGACC AGCATGAAGCCAGCACGGGCCTCGGGCCCCAAGGCGCGACC < 41bp 0.487884220423217 0.838001945666654 0.58144236 0.8213285 prediction 0.676003891333308 Functional Gain - GPRIN2 ENSG00000204175 CDS Human protein_coding chr10:46999111 chr10:46999114 synonymous SNV . 0 24 hm5C_associated_SNPs_99785 0 0 0 0 0 exosome 0.500231643858189 0.500231643922811 0.47977228 1.29245059099503e-10 hm5C_site_52930 DeepMRMD:0.47977228;iRNA_m5C:1.29245059099503e-10 52931 chr17 47247031 47247031 1 + C A rs558063592 47247027 + 47247007 47247047 41 ACATACCGGTCCAACACCCTCACCCGGGTCCAGTTCAAGCT ACATACCGGTCCAACACCCTCACCAGGGTCCAGTTCAAGCT < 41bp 0.450349530410674 0.837992583703122 0.050649017 0.09160882 prediction 0.675985167406244 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47247027 chr17:47247031 synonymous SNV . 0 25 hm5C_associated_SNPs_99786 0 0 0 0 0 nucleolus 0.500231643921072 0.500231700017993 0 1.12193841994568e-07 hm5C_site_52931 DeepMRMD:0;iRNA_m5C:1.12193841994568e-07 52932 chr21 42807927 42807927 1 + T G COAD 42807924 + 42807904 42807944 41 CAAGAGCTCCGTGTTGGAGGCACTGTCAGGAGTTGCCCTTC CAAGAGCTCCGTGTTGGAGGCACGGTCAGGAGTTGCCCTTC < 41bp 0.476849567535552 0.837952154872934 0.2753111 0.72343606 prediction 0.675904309745869 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42807924 chr21:42807927 nonsynonymous SNV 0.300 5 24 hm5C_associated_SNPs_99787 0 0 0 0 1 exosome 0.500231651459229 0.500231643899126 0.44687212 0 hm5C_site_52932 DeepMRMD:0.44687212;iRNA_m5C:0 52933 chr1 248569619 248569619 1 + C A LUSC 248569615 + 248569595 248569635 41 AACAGATTTGCGCCTTCATACACCCATGTACTTCCTCCTCA AACAGATTTGCGCCTTCATACACCAATGTACTTCCTCCTCA < 41bp 0.526062812396809 0.863944203027073 0.014223307 0.036932737 prediction 0.675762781260527 Functional Gain - OR2T1 ENSG00000175143 CDS Human protein_coding chr1:248569615 chr1:248569619 synonymous SNV . 0 25 hm5C_associated_SNPs_99788 0 0 0 0 0 unknown 0.50021557428094 0.500231643969801 0 3.21393777220624e-05 hm5C_site_52933 DeepMRMD:0;iRNA_m5C:3.21393777220624e-05 52934 chr10 70333702 70333702 1 + C A LUAD 70333698 + 70333678 70333718 41 TGGGTATAGCCCAACTCTCTCAGGCTGGTCCTAGCAAATCA TGGGTATAGCCCAACTCTCTCAGGATGGTCCTAGCAAATCA < 41bp 0.48920394943145 0.837861818023815 0.89299387 0.89547116 prediction 0.67572363604763 Functional Gain - TET1 ENSG00000138336 CDS Human protein_coding chr10:70333698 chr10:70333702 nonsynonymous SNV 0.315 1 25 hm5C_associated_SNPs_99789 0 0 1 0 0 chromatin 0.500231643921079 0.50023164392109 0.00495458000000015 2.19824158875781e-14 hm5C_site_52934 DeepMRMD:0.00495458000000015;iRNA_m5C:2.19824158875781e-14 52935 chr1 33945199 33945199 1 + C A LUSC 33945195 + 33945175 33945215 41 CTGGAGCAGTTCCTGACTATCTTGCCTAGGGAGGTCCAGAC CTGGAGCAGTTCCTGACTATCTTGACTAGGGAGGTCCAGAC < 41bp 0.45631091815286 0.837846118453508 0.19193766 0.26881862 prediction 0.675692236907017 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33945195 chr1:33945199 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99790 0 0 0 0 0 exosome 0.500231643910916 0.500231643921092 0 2.03521643982185e-11 hm5C_site_52935 DeepMRMD:0;iRNA_m5C:2.03521643982185e-11 52936 chrX 56590841 56590841 1 + C A SARC 56590837 + 56590817 56590857 41 ATGCAGCAGCAGCTTATGGCCAGCCCTGAGATGATGATCCA ATGCAGCAGCAGCTTATGGCCAGCACTGAGATGATGATCCA < 41bp 0.484294797794194 0.837824781432638 0.10891661 0.062089384 prediction 0.675649562865275 Functional Gain - UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56590837 chrX:56590841 nonsynonymous SNV 0.973 5 25 hm5C_associated_SNPs_99791 0 0 1 0 0 nucleus 0.500231675147191 0.500231734306819 0 1.18319256392496e-07 hm5C_site_52936 DeepMRMD:0;iRNA_m5C:1.18319256392496e-07 52937 chr6 121768935 121768935 1 + T G LUAD 121768932 + 121768912 121768952 41 GAGCAAAACTGGGCTAATTACAGTGCAGAACAAAATCGAAT GAGCAAAACTGGGCTAATTACAGGGCAGAACAAAATCGAAT < 41bp 0.495468970398271 0.837822392400817 0.5179663 0.90909404 prediction 0.675644784801635 Functional Gain - GJA1 ENSG00000152661 CDS Human protein_coding chr6:121768932 chr6:121768935 nonsynonymous SNV 0.964 4 24 hm5C_associated_SNPs_99792 0 0 0 0 0 Endoplasmic reticulum 0.500231643957612 0.500231643921094 0.78225548 0 hm5C_site_52937 DeepMRMD:0.78225548;iRNA_m5C:0 52938 chr3 195953940 195953940 1 + C A UCEC 195953936 + 195953916 195953956 41 GCCGTCTACCTGTACAAGAACACCCTTTGCCCCATCAAGAG GCCGTCTACCTGTACAAGAACACCATTTGCCCCATCAAGAG < 41bp 0.435910036263291 0.837816594909784 0.12011886 0.10791895 prediction 0.675633189819568 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195953936 chr3:195953940 nonsynonymous SNV 0.888 0 25 hm5C_associated_SNPs_99793 0 0 1 0 1 exosome 0.500231643921092 0.500231643921127 0 6.88338275267597e-14 hm5C_site_52938 DeepMRMD:0;iRNA_m5C:6.88338275267597e-14 52939 chr12 48921882 48921882 1 + C A rs150533777 48921878 + 48921858 48921898 41 TGCGCGCGGCGCCCACGGCCCTGCCCTGATACGCAGGAGCC TGCGCGCGGCGCCCACGGCCCTGCACTGATACGCAGGAGCC < 41bp 0.523432273593712 0.861224075468547 0.28728864 0.34732774 prediction 0.675583603749671 Functional Gain - OR8S1 ENSG00000197376 CDS Human protein_coding chr12:48921878 chr12:48921882 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_99794 0 0 0 0 0 unknown 0.500231643921092 0.500231655369059 0 2.28959335935031e-08 hm5C_site_52939 DeepMRMD:0;iRNA_m5C:2.28959335935031e-08 52940 chr11 134180992 134180992 1 + C A LUSC 134180988 + 134180968 134181008 41 GCCCCGAGTACCCAAACTTCCTCCCAAGGCTGTGTATCCCC GCCCCGAGTACCCAAACTTCCTCCAAAGGCTGTGTATCCCC < 41bp 0.430237615268578 0.837779998776772 0.09636387 0.9726023 prediction 0.675559997553544 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134180988 chr11:134180992 synonymous SNV . 0 25 hm5C_associated_SNPs_99795 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0.9452046 1.77635683940025e-15 hm5C_site_52940 DeepMRMD:0.9452046;iRNA_m5C:1.77635683940025e-15 52941 chr14 95030148 95030148 1 + C A ACC 95030144 + 95030124 95030164 41 TTGAGGGCCTGGGCTTCAACCTCACCGAGCTGTCTGAGTCC TTGAGGGCCTGGGCTTCAACCTCAACGAGCTGTCTGAGTCC < 41bp 0.447311458344532 0.837768034743749 0.060493767 0.21761456 prediction 0.675536069487497 Functional Gain - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95030144 chr14:95030148 nonsynonymous SNV 0.759 5 25 hm5C_associated_SNPs_99796 0 0 1 0 0 exosome 0.50023164391666 0.500231604379711 0 0 hm5C_site_52941 DeepMRMD:0;iRNA_m5C:0 52942 chr17 1202057 1202057 1 + C A rs576017793 1202053 + 1202033 1202073 41 TTTGCATGCTTCGTGCCACACGCCCGCGGTGATCCCAGCCA TTTGCATGCTTCGTGCCACACGCCAGCGGTGATCCCAGCCA < 41bp 0.483767027580232 0.837753393375425 0.034234077 0.109686345 prediction 0.67550678675085 Functional Gain - TUSC5 ENSG00000184811 UTR3 Human protein_coding chr17:1202053 chr17:1202057 . . 0 25 hm5C_associated_SNPs_99797 0 0 0 0 0 exosome 0.500237737831908 0.50098037289637 0 0.00148527012892341 hm5C_site_52942 DeepMRMD:0;iRNA_m5C:0.00148527012892341 52943 chr1 24861748 24861748 1 + C A rs16829813 24861744 + 24861724 24861764 41 CCGCAGCGTTGAATGAGCCCCAGACCTTTGATTGCGCGCTG CCGCAGCGTTGAATGAGCCCCAGAACTTTGATTGCGCGCTG < 41bp 0.499867148894973 0.83772493910381 0.15508461 0.20001402 prediction 0.67544987820762 Functional Gain - RCAN3 ENSG00000117602 CDS Human protein_coding chr1:24861744 chr1:24861748 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_99798 0 0 0 0 0 exosome 0.500231645339815 0.5002316436317 0 0 hm5C_site_52943 DeepMRMD:0;iRNA_m5C:0 52944 chr5 44809402 44809402 1 + T G MESO 44809399 + 44809379 44809419 41 GTACCAGTACTTCACCAAGACCGTGTTCCTGTCGGGTCTGC GTACCAGTACTTCACCAAGACCGGGTTCCTGTCGGGTCTGC < 41bp 0.488050141601842 0.837719741402311 0.2825635 0.5318111 prediction 0.675439482804623 Functional Gain - MRPS30 ENSG00000112996 CDS Human protein_coding chr5:44809399 chr5:44809402 nonsynonymous SNV 0.816 1 24 hm5C_associated_SNPs_99799 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643925393 0.0636222 8.60023163795631e-12 hm5C_site_52944 DeepMRMD:0.0636222;iRNA_m5C:8.60023163795631e-12 52945 chr6 159653635 159653635 1 + C A rs381639 159653631 + 159653611 159653651 41 CGGCGCAAAGCCAGCCTCGCCGGCCCGGAGGACCCCCCATT CGGCGCAAAGCCAGCCTCGCCGGCACGGAGGACCCCCCATT < 41bp 0.474148966546393 0.837686687990684 0.38624033 0.43390924 prediction 0.675373375981368 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159653631 chr6:159653635 synonymous SNV . 0 25 hm5C_associated_SNPs_99800 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643667889 0 0 hm5C_site_52945 DeepMRMD:0;iRNA_m5C:0 52946 chrX 151818947 151818947 1 + C A UCEC 151818943 + 151818923 151818963 41 GTTCAGAGGGAAGTTAACAGCTACCTTGTGCAAGTCTACTG GTTCAGAGGGAAGTTAACAGCTACATTGTGCAAGTCTACTG < 41bp 0.549403190700802 0.88708396985912 0.23206273 0.2611412 prediction 0.675361558316635 Functional Gain - GABRQ ENSG00000147402 CDS Human other chrX:151818943 chrX:151818947 nonsynonymous SNV 0.944 2 25 hm5C_associated_SNPs_99801 0 0 0 0 2 chromatin 0.500231643935534 0.500263297393979 0 6.33069168902711e-05 hm5C_site_52946 DeepMRMD:0;iRNA_m5C:6.33069168902711e-05 52947 chr1 248685465 248685465 1 + C A UCEC 248685461 + 248685441 248685481 41 AGCTGCCCCTCTGTGGTCATCGCACACTGGATCATATTTTC AGCTGCCCCTCTGTGGTCATCGCAAACTGGATCATATTTTC < 41bp 0.484044069859251 0.837662627863247 0.054435283 0.2554326 prediction 0.675325255726494 Functional Gain - OR2G6 ENSG00000188558 CDS Human protein_coding chr1:248685461 chr1:248685465 nonsynonymous SNV 0.919 0 25 hm5C_associated_SNPs_99802 0 0 0 0 0 unknown 0.50020057607533 0.500231617124065 0 6.20820974690517e-05 hm5C_site_52947 DeepMRMD:0;iRNA_m5C:6.20820974690517e-05 52948 chr19 17972156 17972156 1 + C A UCEC 17972152 + 17972132 17972172 41 CTGCCCACCCCCAAATGCCACACGCCGCCCCTCTACCGCAT CTGCCCACCCCCAAATGCCACACGACGCCCCTCTACCGCAT < 41bp 0.469689144080616 0.83765843761882 0.0018073618 0.0036312938 prediction 0.67531687523764 Functional Gain - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972152 chr19:17972156 nonsynonymous SNV 0.026 0 25 hm5C_associated_SNPs_99803 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_52948 DeepMRMD:0;iRNA_m5C:0 52949 chr1 20005147 20005147 1 + C A PRAD 20005143 + 20005123 20005163 41 AGCAGGAAGGCCCTGAAGGCCAGCCTGACGCTGGGCATCCT AGCAGGAAGGCCCTGAAGGCCAGCATGACGCTGGGCATCCT < 41bp 0.539581276395368 0.877119807829126 0.225052 0.23243275 prediction 0.675077062867517 Functional Gain - HTR6 ENSG00000158748 CDS Human protein_coding chr1:20005143 chr1:20005147 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_99804 0 0 0 0 2 Cytosol 0.500231643921092 0.500231644619385 0 1.39658551390198e-09 hm5C_site_52949 DeepMRMD:0;iRNA_m5C:1.39658551390198e-09 52950 chr6 121768658 121768658 1 + C A LAML 121768654 + 121768634 121768674 41 TGGTGGTGTCCTTGGTGTCCCTGGCCTTGAATATCATTGAA TGGTGGTGTCCTTGGTGTCCCTGGACTTGAATATCATTGAA < 41bp 0.530930755908854 0.86846541987244 0.05455473 0.3217563 prediction 0.675069327927172 Functional Gain - GJA1 ENSG00000152661 CDS Human protein_coding chr6:121768654 chr6:121768658 nonsynonymous SNV 0.237 3 25 hm5C_associated_SNPs_99805 0 0 0 0 0 Endoplasmic reticulum 0.50023164392055 0.500231643878405 0 0 hm5C_site_52950 DeepMRMD:0;iRNA_m5C:0 52951 chr11 64329573 64329573 1 + C A UCEC 64329569 + 64329549 64329589 41 CCAACATTCGTCATCTACTGCGGCCTGCGGTTCGTGGCCGC CCAACATTCGTCATCTACTGCGGCATGCGGTTCGTGGCCGC < 41bp 0.460300332319296 0.837516551324708 0.7860987 0.80041003 prediction 0.675033102649416 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64329569 chr11:64329573 nonsynonymous SNV 0.017 3 25 hm5C_associated_SNPs_99806 0 0 0 0 1 nucleoplasm 0.500231643928365 0.50023164386511 0.0286226599999999 0 hm5C_site_52951 DeepMRMD:0.0286226599999999;iRNA_m5C:0 52952 chr19 58773097 58773097 1 + T G THYM 58773094 + 58773074 58773114 41 CTCATACACCAGAGAACACACACTGGAGAAAAGCCCTTCGA CTCATACACCAGAGAACACACACGGGAGAAAAGCCCTTCGA < 41bp 0.49367341276142 0.837508139973898 0.043117613 0.10004425 prediction 0.675016279947796 Functional Gain - ZNF544 ENSG00000198131 CDS Human protein_coding chr19:58773094 chr19:58773097 synonymous SNV . 0 24 hm5C_associated_SNPs_99807 0 0 1 2 0 chromatin 0.500231643920787 0.500231643921092 0 6.10844708148761e-13 hm5C_site_52952 DeepMRMD:0;iRNA_m5C:6.10844708148761e-13 52953 chr19 36206307 36206307 1 + C A PRAD 36206303 + 36206283 36206323 41 CCCCTTGGTTGGTGGGGGGCCAGCCTGCCCTGTGGAGCATC CCCCTTGGTTGGTGGGGGGCCAGCATGCCCTGTGGAGCATC < 41bp 0.535116190981102 0.872617100848704 0.32320467 0.34079278 prediction 0.675001819735203 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36206303 chr19:36206307 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_99808 0 0 0 2 0 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_52953 DeepMRMD:0;iRNA_m5C:0 52954 chr19 11144002 11144002 1 + C A HNSC 11143998 + 11143978 11144018 41 CAGGACCGAGCCCACCGCATCGGGCAGCAGAACGAGGTGCG CAGGACCGAGCCCACCGCATCGGGAAGCAGAACGAGGTGCG < 41bp 0.49556404721983 0.837474152399245 0.88587874 0.9210372 prediction 0.67494830479849 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11143998 chr19:11144002 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_99809 0 0 1 0 1 Nucleus 0.500231641055562 0.50023164394053 0.07031692 5.76993675061033e-09 hm5C_site_52954 DeepMRMD:0.07031692;iRNA_m5C:5.76993675061033e-09 52955 chr5 140531854 140531854 1 + T G rs200563191 140531851 + 140531831 140531871 41 TCCCAGCCCTACCTGCCTCTCCCTGAGGCGGCCCCGGCCCA TCCCAGCCCTACCTGCCTCTCCCGGAGGCGGCCCCGGCCCA < 41bp 0.518330900337439 0.855778253512573 0.18243164 0.5323564 prediction 0.674894706350269 Functional Gain - PCDHB6 ENSG00000113211 CDS Human protein_coding chr5:140531851 chr5:140531854 synonymous SNV . 0 24 hm5C_associated_SNPs_99810 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0647127999999999 0 hm5C_site_52955 DeepMRMD:0.0647127999999999;iRNA_m5C:0 52956 chr17 6920579 6920579 1 + G T SARC 6920583 - 6920563 6920603 41 AGAAGGCCAGAATCCAGGGTCAGGCTGTCTGGAACAGGAAG AGAAGGCCAGAATCCAGGGTCAGGATGTCTGGAACAGGAAG < 41bp 0.475878748403674 0.837417496999835 0.9142227 0.91969407 prediction 0.674834993999671 Functional Gain - C17orf49;C17orf49;RNASEK-C17orf49 ENSG00000161939;ENSG00000258315;ENSG00000258315 exonic;splicing Human other chr17:6920583 chr17:6920579 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99811 0 0 0 0 0 unknown 0.500232083641997 0.500231643919941 0.01094274 0 hm5C_site_52956 DeepMRMD:0.01094274;iRNA_m5C:0 52957 chr19 55494236 55494236 1 + C A LUSC 55494232 + 55494212 55494252 41 TGAGCTAATGAGGAGCAACGCGGCCCTGTTCCAGCTGGGCT TGAGCTAATGAGGAGCAACGCGGCACTGTTCCAGCTGGGCT < 41bp 0.539147079670499 0.876552052482217 0.47168365 0.86991566 prediction 0.674809945623438 Functional Gain - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55494232 chr19:55494236 synonymous SNV . 0 25 hm5C_associated_SNPs_99812 0 0 0 0 0 Cytosol 0.500231643921093 0.500231643921167 0.73983132 1.48547840694846e-13 hm5C_site_52957 DeepMRMD:0.73983132;iRNA_m5C:1.48547840694846e-13 52958 chr10 45939224 45939224 1 + C A COAD 45939220 + 45939200 45939240 41 GGGAGCAGCTGTCGGAGTACCTGACCGTGGTGATCTTCACC GGGAGCAGCTGTCGGAGTACCTGAACGTGGTGATCTTCACC < 41bp 0.45195630111023 0.837383515803255 0.23296589 0.8994203 prediction 0.674767031606511 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45939220 chr10:45939224 nonsynonymous SNV 0.919 5 25 hm5C_associated_SNPs_99813 0 0 0 0 2 Cytosol 0.500231644144201 0.500231640781627 0.7988406 0 hm5C_site_52958 DeepMRMD:0.7988406;iRNA_m5C:0 52959 chr5 140553818 140553818 1 + C A LUAD 140553814 + 140553794 140553834 41 GTCCGTGAGAACAACAGCCCCGCCCTGCCCATCGGCAGTGT GTCCGTGAGAACAACAGCCCCGCCATGCCCATCGGCAGTGT < 41bp 0.53933516292967 0.876676242758576 0.016654462 0.20203948 prediction 0.674682159657814 Functional Gain - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140553814 chr5:140553818 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99814 0 0 0 0 0 exosome 0.500231472749018 0.500185456878162 0 0 hm5C_site_52959 DeepMRMD:0;iRNA_m5C:0 52960 chr12 107141289 107141289 1 + C A LUSC 107141285 + 107141265 107141305 41 GCTGGGTCCCCAGCTGAGAACTCCCAACAGCTGCCCTGTAT GCTGGGTCCCCAGCTGAGAACTCCAAACAGCTGCCCTGTAT < 41bp 0.426885773874399 0.837292166709575 0.08957559 0.9580679 prediction 0.674584333419151 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107141285 chr12:107141289 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99815 0 0 0 0 2 nucleoplasm 0.500231651384085 0.500231643791497 0.9161358 0 hm5C_site_52960 DeepMRMD:0.9161358;iRNA_m5C:0 52961 chr9 135458514 135458514 1 + C A COAD 135458510 + 135458490 135458530 41 TGCCGACTGCAAACCACTCGCGGCCTGTGCACCCTACTCTA TGCCGACTGCAAACCACTCGCGGCATGTGCACCCTACTCTA < 41bp 0.530924439017278 0.868198409955488 0.07297504 0.58123296 prediction 0.674547941876421 Functional Gain - BARHL1 ENSG00000125492 CDS Human protein_coding chr9:135458510 chr9:135458514 synonymous SNV . 0 25 hm5C_associated_SNPs_99816 0 0 0 0 0 unknown 0.500231651963533 0.500231643923103 0.16246592 0 hm5C_site_52961 DeepMRMD:0.16246592;iRNA_m5C:0 52962 chr11 67186991 67186991 1 + G T UCEC 67186995 - 67186975 67187015 41 GGTGCAGACGCCATGCCTGCCGCCCCCGCCAGCGCCAGCCA GGTGCAGACGCCATGCCTGCCGCCACCGCCAGCGCCAGCCA < 41bp 0.550112297230563 0.887291923930177 0.09147069 0.10160288 prediction 0.674359253399227 Functional Gain - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67186995 chr11:67186991 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_99817 0 0 0 0 1 exosome 0.500222032574602 0.500258028125497 0 7.19911017896813e-05 hm5C_site_52962 DeepMRMD:0;iRNA_m5C:7.19911017896813e-05 52963 chr11 1955808 1955808 1 + C A LUAD 1955804 + 1955784 1955824 41 GAAGAGAGGCAAGAAGCAGACAGCCCGGGAAATGAAGAAGA GAAGAGAGGCAAGAAGCAGACAGCACGGGAAATGAAGAAGA < 41bp 0.467962659194583 0.837148575689808 0.4196561 0.6011177 prediction 0.674297151379617 Functional Gain - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955804 chr11:1955808 synonymous SNV . 0 25 hm5C_associated_SNPs_99818 0 0 0 0 2 exosome 0.500231643921745 0.500231643921093 0.2022354 0 hm5C_site_52963 DeepMRMD:0.2022354;iRNA_m5C:0 52964 chr19 36207421 36207421 1 + C A SKCM 36207417 + 36207397 36207437 41 TGTAGCCTTTGTCCTCAGCGCTCCCGGGACTTCTCGGCCAT TGTAGCCTTTGTCCTCAGCGCTCCAGGGACTTCTCGGCCAT < 41bp 0.539038877472319 0.876165381028366 0.021318167 0.7625029 prediction 0.674253007112094 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207417 chr19:36207421 synonymous SNV . 0 25 hm5C_associated_SNPs_99819 0 0 0 0 1 nucleus 0.500231643921092 0.500231643921093 0.5250058 2.22044604925031e-16 hm5C_site_52964 DeepMRMD:0.5250058;iRNA_m5C:2.22044604925031e-16 52965 chr1 12854213 12854213 1 + C A BLCA 12854209 + 12854189 12854229 41 GTCCAAGGATGGGAGAGCACCAGCCCTTAAAGGTGTTCATA GTCCAAGGATGGGAGAGCACCAGCACTTAAAGGTGTTCATA < 41bp 0.470891108635541 0.837094330660821 0.2124975 0.35694754 prediction 0.674188661321643 Functional Gain - PRAMEF1 ENSG00000116721 CDS Human protein_coding chr1:12854209 chr1:12854213 nonsynonymous SNV 0.005 3 25 hm5C_associated_SNPs_99820 0 0 0 0 0 unknown 0.500231643921093 0.5002316449142 0 1.986215636407e-09 hm5C_site_52965 DeepMRMD:0;iRNA_m5C:1.986215636407e-09 52966 chr3 147128212 147128212 1 + C A LUSC 147128208 + 147128188 147128228 41 ACGCGGGACTTTCTGTTCCGCAACCGGGGTTTTGGCGACGC ACGCGGGACTTTCTGTTCCGCAACAGGGGTTTTGGCGACGC < 41bp 0.483323289217303 0.837091264270099 0.18371674 0.28522438 prediction 0.674182528540198 Functional Gain - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147128208 chr3:147128212 synonymous SNV . 0 25 hm5C_associated_SNPs_99821 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52966 DeepMRMD:0;iRNA_m5C:0 52967 chr12 71834042 71834042 1 + C A UCEC 71834038 + 71834018 71834058 41 CCGACCTGGGGCTCTCGGAGCTGCCTTCCAACCTCAGCGTC CCGACCTGGGGCTCTCGGAGCTGCATTCCAACCTCAGCGTC < 41bp 0.525753001600668 0.862842207215689 0.2727438 0.26244366 prediction 0.674178411230043 Functional Gain - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71834038 chr12:71834042 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_99822 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_52967 DeepMRMD:0;iRNA_m5C:0 52968 chr11 6415741 6415741 1 + T G OV 6415738 + 6415718 6415758 41 GCTACTCTTTGTGCCCAGCTCTCTGCCCGTGCTGACAGCCC GCTACTCTTTGTGCCCAGCTCTCGGCCCGTGCTGACAGCCC < 41bp 0.516085134739948 0.853136222945079 0.32277977 0.3815284 prediction 0.674102176410262 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6415738 chr11:6415741 synonymous SNV . 0 24 hm5C_associated_SNPs_99823 0 0 1 1 0 Endoplasmic reticulum 0.500231643916604 0.500231643902403 0 0 hm5C_site_52968 DeepMRMD:0;iRNA_m5C:0 52969 chr1 35258611 35258611 1 + C A rs560307013 35258607 + 35258587 35258627 41 GCTCGTGCGGTCCAGCAGGGCTCCCGCGGGCGTCACTCCGG GCTCGTGCGGTCCAGCAGGGCTCCAGCGGGCGTCACTCCGG < 41bp 0.490359431014675 0.837046349091887 0.7114056 0.94105047 prediction 0.674092698183774 Functional Gain - GJA4 ENSG00000187513 UTR5 Human protein_coding chr1:35258607 chr1:35258611 . . 0 25 hm5C_associated_SNPs_99824 0 0 0 0 1 cytosol 0.500231643933422 0.500231819597915 0.45928974 3.5132898634771e-07 hm5C_site_52969 DeepMRMD:0.45928974;iRNA_m5C:3.5132898634771e-07 52970 chrX 105421276 105421276 1 + C A rs139545664 105421272 + 105421252 105421292 41 GGGCGGAGCCTCGTCGGAGCCGCTCGGAAGGGAGCTGTACC GGGCGGAGCCTCGTCGGAGCCGCTAGGAAGGGAGCTGTACC < 41bp 0.507789953117141 0.84482911899052 0.39590454 0.69263804 prediction 0.674078331746758 Functional Gain - MUM1L1 ENSG00000157502 UTR5 Human protein_coding chrX:105421272 chrX:105421276 . . 0 25 hm5C_associated_SNPs_99825 0 0 0 0 2 exosome 0.500231643905528 0.500231643921092 0.38527608 3.11286552090451e-11 hm5C_site_52970 DeepMRMD:0.38527608;iRNA_m5C:3.11286552090451e-11 52971 chr1 43773165 43773165 1 + C A LUAD 43773161 + 43773141 43773181 41 CAGTGCCCAGGCATATCAGGCTGCCGGGGCCTCACCTTCTG CAGTGCCCAGGCATATCAGGCTGCAGGGGCCTCACCTTCTG < 41bp 0.465666940578632 0.837019326800416 0.42684877 0.67100406 prediction 0.674038653600832 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43773161 chr1:43773165 synonymous SNV . 0 25 hm5C_associated_SNPs_99826 0 0 0 0 2 Cytosol 0.500231645582195 0.500231588490576 0.34200812 0 hm5C_site_52971 DeepMRMD:0.34200812;iRNA_m5C:0 52972 chr16 1823828 1823828 1 + C A rs573283501 1823824 + 1823804 1823844 41 CGGTGGACCCGAGCGAGTCCCGACCCCTGCCCCCGCAGCGT CGGTGGACCCGAGCGAGTCCCGACACCTGCCCCCGCAGCGT < 41bp 0.496107537374623 0.837014852192947 0.34630227 0.38315392 prediction 0.674029704385894 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1823824 chr16:1823828 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_99827 0 0 1 0 0 chromatin 0.500231682120638 0.500231638547536 0 0 hm5C_site_52972 DeepMRMD:0;iRNA_m5C:0 52973 chr5 129521440 129521440 1 + C A rs78253116 129521436 + 129521416 129521456 41 ACCATGCAACTGGCTGAACTCTGGCTTGAAAAACATTTAGG ACCATGCAACTGGCTGAACTCTGGATTGAAAAACATTTAGG < 41bp 0.480363468783573 0.836990301621861 0.3806562 0.49175218 prediction 0.673980603243722 Functional Gain - CHSY3 ENSG00000198108 CDS Human protein_coding chr5:129521436 chr5:129521440 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_99828 0 0 0 0 0 exosome 0.500227727352535 0.497370153151966 0 0 hm5C_site_52973 DeepMRMD:0;iRNA_m5C:0 52974 chr3 36524582 36524582 1 + C A STAD 36524578 + 36524558 36524598 41 GCACCCCAGCGGTGCATGGGCAAGCTGGTAAGGGCTTGTGC GCACCCCAGCGGTGCATGGGCAAGATGGTAAGGGCTTGTGC < 41bp 0.527232449126891 0.864203438196447 0.49776673 0.4917099 prediction 0.673941978139113 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36524578 chr3:36524582 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_99829 0 0 0 1 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52974 DeepMRMD:0;iRNA_m5C:0 52975 chr2 102626136 102626136 1 + T G GBM 102626133 + 102626113 102626153 41 GTGCCCTACTGGTTGTGGGCCTCTGTCAGCCCCCGCATCAA GTGCCCTACTGGTTGTGGGCCTCGGTCAGCCCCCGCATCAA < 41bp 0.530722963258099 0.867664417115891 0.02394396 0.11043936 prediction 0.673882907715584 Functional Gain - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102626133 chr2:102626136 synonymous SNV . 0 24 hm5C_associated_SNPs_99830 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_52975 DeepMRMD:0;iRNA_m5C:0 52976 chr15 60297484 60297484 1 + C A HNSC 60297480 + 60297460 60297500 41 GGCAGCTTCCTGCGGCGCCGCAAGCGCTTCAAGGTGCTTAA GGCAGCTTCCTGCGGCGCCGCAAGAGCTTCAAGGTGCTTAA < 41bp 0.517542100440707 0.854451970994046 0.15170148 0.08854067 prediction 0.673819741106678 Functional Gain - FOXB1 ENSG00000171956 CDS Human protein_coding chr15:60297480 chr15:60297484 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99831 0 0 0 0 0 exosome 0.500231669134386 0.500231643529311 0 0 hm5C_site_52976 DeepMRMD:0;iRNA_m5C:0 52977 chr17 39394644 39394644 1 + C A UCEC 39394640 + 39394620 39394660 41 ACCACCCCACGACTGTCTGCCTGCCTGGTTGCCTAAACCAG ACCACCCCACGACTGTCTGCCTGCATGGTTGCCTAAACCAG < 41bp 0.471291838432755 0.836877848736644 0.04898578 0.19766748 prediction 0.673755697473288 Functional Gain - KRTAP9-8 ENSG00000187272 CDS Human protein_coding chr17:39394640 chr17:39394644 nonsynonymous SNV 0.078 3 25 hm5C_associated_SNPs_99832 0 0 0 0 0 unknown 0.500231605283869 0.500235676267734 0 8.14196773002429e-06 hm5C_site_52977 DeepMRMD:0;iRNA_m5C:8.14196773002429e-06 52978 chr1 162467956 162467956 1 + T G CHOL 162467953 + 162467933 162467973 41 CGCCCCCCGGCGCCCTCAAGCAGTTCTTGCCGCCAGGAACC CGCCCCCCGGCGCCCTCAAGCAGGTCTTGCCGCCAGGAACC < 41bp 0.489582560016825 0.836858540845633 0.72965956 0.9242791 prediction 0.673717081691267 Functional Gain - UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162467953 chr1:162467956 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_99833 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.38923908 0 hm5C_site_52978 DeepMRMD:0.38923908;iRNA_m5C:0 52979 chr17 34313634 34313634 1 + G T UCEC 34313638 - 34313618 34313658 41 TTCTTCCTCCTCATCACCATCGCCCTAGGGACCAAGACTGA TTCTTCCTCCTCATCACCATCGCCATAGGGACCAAGACTGA < 41bp 0.445197171408955 0.836850198384367 0.1138801 0.7932554 prediction 0.673700396768733 Functional Gain - CCL14 ENSG00000213494;ENSG00000266956 CDS Human other chr17:34313638 chr17:34313634 nonsynonymous SNV 0.009 1 25 hm5C_associated_SNPs_99834 0 0 0 0 1 exosome 0.500231643921092 0.5002316439211 0.5865108 1.57651669496772e-14 hm5C_site_52979 DeepMRMD:0.5865108;iRNA_m5C:1.57651669496772e-14 52980 chr2 135659396 135659396 1 + C A HNSC 135659392 + 135659372 135659412 41 AACTCAAAGCCGGCAATGCCCTGGCATTTTTGGGTCTTGAG AACTCAAAGCCGGCAATGCCCTGGAATTTTTGGGTCTTGAG < 41bp 0.493961358849325 0.836824983698053 0.0959782 0.11116946 prediction 0.673649967396105 Functional Gain - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135659392 chr2:135659396 nonsynonymous SNV 0.985 0 25 hm5C_associated_SNPs_99835 0 0 0 0 1 nucleus 0.500231643921385 0.500231643921129 0 0 hm5C_site_52980 DeepMRMD:0;iRNA_m5C:0 52981 chr19 57642060 57642060 1 + C A LUSC 57642056 + 57642036 57642076 41 GATGGAGGGAAGCTGATCAGCAGCCCAGACACAAGGCTTGT GATGGAGGGAAGCTGATCAGCAGCACAGACACAAGGCTTGT < 41bp 0.475991829173655 0.836819012915378 0.72492754 0.49473682 prediction 0.673638025830757 Functional Gain - USP29 ENSG00000131864 CDS Human protein_coding chr19:57642056 chr19:57642060 nonsynonymous SNV 0.007 3 25 hm5C_associated_SNPs_99836 0 0 0 0 0 unknown 0.500231652510845 0.50023158296319 0 0 hm5C_site_52981 DeepMRMD:0;iRNA_m5C:0 52982 chr1 159176188 159176188 1 + C A LUAD 159176184 + 159176164 159176204 41 CCCGCACCCTCTTGCCCTCTCTGCCCCTCCCTGAAGGATGG CCCGCACCCTCTTGCCCTCTCTGCACCTCCCTGAAGGATGG < 41bp 0.4682671023891 0.836811639254008 0.023162782 0.037433594 prediction 0.673623278508017 Functional Gain - ACKR1 ENSG00000213088 CDS Human protein_coding chr1:159176184 chr1:159176188 nonsynonymous SNV 0.072 3 25 hm5C_associated_SNPs_99837 0 0 0 0 0 Endoplasmic reticulum 0.500231643920817 0.500231643921092 0 5.51114709423928e-13 hm5C_site_52982 DeepMRMD:0;iRNA_m5C:5.51114709423928e-13 52983 chr8 134239843 134239843 1 + C A LUAD 134239839 + 134239819 134239859 41 TGTCCTGATGGGCTTGGCTTCTCCCGCCAGGTCCTATGGAT TGTCCTGATGGGCTTGGCTTCTCCAGCCAGGTCCTATGGAT < 41bp 0.459149965136903 0.836738469586361 0.15052721 0.9467557 prediction 0.673476939172722 Functional Gain - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134239839 chr8:134239843 nonsynonymous SNV 0.900 3 25 hm5C_associated_SNPs_99838 0 0 0 0 0 nucleus 0.500231822839713 0.500231656547995 0.8935114 0 hm5C_site_52983 DeepMRMD:0.8935114;iRNA_m5C:0 52984 chr12 119594464 119594464 1 + C A rs199585212 119594460 + 119594440 119594480 41 GCCGGAGACGGAGCCGGACCCGCACGAGCAGCAGCTCTAGC GCCGGAGACGGAGCCGGACCCGCAAGAGCAGCAGCTCTAGC < 41bp 0.517347227109553 0.854060026618028 0.39250863 0.72379756 prediction 0.67342559901695 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119594460 chr12:119594464 nonsynonymous SNV 0.932 1 25 hm5C_associated_SNPs_99839 0 0 1 0 0 Endoplasmic reticulum 0.500230313912631 0.500231643917479 0.44759512 2.66000969539881e-06 hm5C_site_52984 DeepMRMD:0.44759512;iRNA_m5C:2.66000969539881e-06 52985 chr8 143763436 143763436 1 + C A BLCA 143763432 + 143763412 143763452 41 CGTGGGCAAGAAGAACATCACGTGCTGTGACACCGACTTGT CGTGGGCAAGAAGAACATCACGTGATGTGACACCGACTTGT < 41bp 0.481343613510372 0.836681688876131 0.449802 0.8069197 prediction 0.673363377752261 Functional Gain - PSCA ENSG00000167653 CDS Human protein_coding chr8:143763432 chr8:143763436 stopgain 0.938 1 25 hm5C_associated_SNPs_99840 0 0 0 0 1 exosome 0.500225795509362 0.500199519256299 0.6138394 0 hm5C_site_52985 DeepMRMD:0.6138394;iRNA_m5C:0 52986 chr20 57768917 57768917 1 + C A ACC 57768913 + 57768893 57768933 41 AGTACCTCCTCAGGTTACCTCAGGCAGAGACCCCCTTACCA AGTACCTCCTCAGGTTACCTCAGGAAGAGACCCCCTTACCA < 41bp 0.47635885527627 0.836677193530897 0.822349 0.89735997 prediction 0.673354387061793 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57768913 chr20:57768917 nonsynonymous SNV 0.930 0 25 hm5C_associated_SNPs_99841 0 0 1 0 0 exosome 0.500231647622972 0.50023164392116 0.15002194 0 hm5C_site_52986 DeepMRMD:0.15002194;iRNA_m5C:0 52987 chr4 71347310 71347310 1 + C A LUAD 71347306 + 71347286 71347326 41 AGCTCCACCAGAGACCACAGCTGCCCCACCCACACCTTCTG AGCTCCACCAGAGACCACAGCTGCACCACCCACACCTTCTG < 41bp 0.457251950762567 0.836624053343547 0.07495093 0.099276304 prediction 0.673248106687093 Functional Gain - MUC7 ENSG00000171195 CDS Human protein_coding chr4:71347306 chr4:71347310 synonymous SNV . 0 25 hm5C_associated_SNPs_99842 0 0 0 0 0 unknown 0.50023164838036 0.5002315668238 0 0 hm5C_site_52987 DeepMRMD:0;iRNA_m5C:0 52988 chr3 51743434 51743434 1 + T G COAD 51743431 + 51743411 51743451 41 GGTGTTATTGGCGGTTCCTACAGTGATGTCTCCATCCAGGT GGTGTTATTGGCGGTTCCTACAGGGATGTCTCCATCCAGGT < 41bp 0.518945249821001 0.855532341868342 0.1654172 0.93781286 prediction 0.673174184094683 Functional Gain - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51743431 chr3:51743434 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_99843 0 0 0 0 1 Endoplasmic reticulum 0.500231643935195 0.500231643921093 0.87562572 0 hm5C_site_52988 DeepMRMD:0.87562572;iRNA_m5C:0 52989 chr12 124132567 124132567 1 + C A COAD 124132563 + 124132543 124132583 41 TGGAGACTTCTTCGGAGACCCTGGCAACCCTCCTGAATTTA TGGAGACTTCTTCGGAGACCCTGGAAACCCTCCTGAATTTA < 41bp 0.463390249896811 0.836586044065407 0.12236631 0.36254048 prediction 0.673172088130815 Functional Gain - GTF2H3 ENSG00000111358 CDS Human protein_coding chr12:124132563 chr12:124132567 synonymous SNV . 0 25 hm5C_associated_SNPs_99844 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_52989 DeepMRMD:0;iRNA_m5C:0 52990 chr12 54448765 54448765 1 + C A ACC 54448761 + 54448741 54448781 41 CGAAGGAGAAGGATCGAGATCGCCCACTCGCTGTGCCTCTC CGAAGGAGAAGGATCGAGATCGCCAACTCGCTGTGCCTCTC < 41bp 0.444431633613546 0.836584731241217 0.030327499 0.18147829 prediction 0.673169462482433 Functional Gain - HOXC4 ENSG00000198353;ENSG00000273266 CDS Human other chr12:54448761 chr12:54448765 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_99845 0 0 1 0 0 exosome 0.500231644034545 0.500231327792143 0 0 hm5C_site_52990 DeepMRMD:0;iRNA_m5C:0 52991 chr3 9957459 9957459 1 + C A rs541811483 9957455 + 9957435 9957475 41 CTAGAGCTGTGCAGCCGGCTCGAACGAGAGGCCGCCCGACT CTAGAGCTGTGCAGCCGGCTCGAAAGAGAGGCCGCCCGACT < 41bp 0.511125122259307 0.847707456000465 0.2286691 0.62299937 prediction 0.673164667482316 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9957455 chr3:9957459 synonymous SNV . 0 25 hm5C_associated_SNPs_99846 0 0 0 0 0 Ribosome 0.500231643921053 0.500231643922179 0.24599874 2.25131024933489e-12 hm5C_site_52991 DeepMRMD:0.24599874;iRNA_m5C:2.25131024933489e-12 52992 chr20 31607413 31607413 1 + C A COAD 31607409 + 31607389 31607429 41 GCCCGCCAGTTTCCCGAGCCCATGCCTGTGGTGCTCAAGGT GCCCGCCAGTTTCCCGAGCCCATGACTGTGGTGCTCAAGGT < 41bp 0.476444063106248 0.836525558401033 0.18545967 0.24094883 prediction 0.673051116802066 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31607409 chr20:31607413 nonsynonymous SNV 0.359 1 25 hm5C_associated_SNPs_99847 0 0 1 0 1 cytosol 0.500231427918167 0.500231644680251 0 4.33524166565391e-07 hm5C_site_52992 DeepMRMD:0;iRNA_m5C:4.33524166565391e-07 52993 chr12 113515246 113515246 1 + C A LUAD 113515242 + 113515222 113515262 41 AGTACAGGCACCATGCGGCCCGTGCGGCGCAACTTCTACGA AGTACAGGCACCATGCGGCCCGTGAGGCGCAACTTCTACGA < 41bp 0.478804546090932 0.83650808232295 0.049785167 0.11470792 prediction 0.6730161646459 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113515242 chr12:113515246 synonymous SNV . 0 25 hm5C_associated_SNPs_99848 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_52993 DeepMRMD:0;iRNA_m5C:0 52994 chr19 9204487 9204487 1 + C A BRCA 9204483 + 9204463 9204503 41 CACTCCCATCCTCCGACTTTCGTGCACGGACACCTCTGTGA CACTCCCATCCTCCGACTTTCGTGAACGGACACCTCTGTGA < 41bp 0.493607588310534 0.836506500793068 0.1907936 0.30973944 prediction 0.673013001586136 Functional Gain - OR1M1 ENSG00000170929 CDS Human protein_coding chr19:9204483 chr19:9204487 stopgain 0.003 1 25 hm5C_associated_SNPs_99849 0 0 0 0 0 unknown 0.500231643909327 0.500231643866046 0 0 hm5C_site_52994 DeepMRMD:0;iRNA_m5C:0 52995 chr14 75538559 75538559 1 + C A BLCA 75538555 + 75538535 75538575 41 TGTTTGACTCCTCCAGGGCCCGGGCTAAGGGCACAGAACTA TGTTTGACTCCTCCAGGGCCCGGGATAAGGGCACAGAACTA < 41bp 0.521853315906558 0.858312879064825 0.89101136 0.90313494 prediction 0.672919126316534 Functional Gain - ZC2HC1C ENSG00000119703 CDS Human protein_coding chr14:75538555 chr14:75538559 nonsynonymous SNV 0.945 4 25 hm5C_associated_SNPs_99850 0 0 0 0 1 exosome 0.500231644190877 0.500231643921054 0.02424716 0 hm5C_site_52995 DeepMRMD:0.02424716;iRNA_m5C:0 52996 chr4 151504305 151504305 1 + C A COAD 151504301 + 151504281 151504321 41 GTCTGTAAGGTGGTCTCGGACGTGCTCAAGGAAGTGGAGGT GTCTGTAAGGTGGTCTCGGACGTGATCAAGGAAGTGGAGGT < 41bp 0.491944469543079 0.836411735378624 0.3383463 0.37557122 prediction 0.672823470757248 Functional Gain - MAB21L2 ENSG00000181541 CDS Human protein_coding chr4:151504301 chr4:151504305 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99851 0 0 1 0 0 nucleus 0.500231643921092 0.50023164392109 0 0 hm5C_site_52996 DeepMRMD:0;iRNA_m5C:0 52997 chr17 7948212 7948212 1 + C A UCEC 7948208 + 7948188 7948228 41 TCCCAGTTCCTGAATGGTCTCAACCCTGTCCTGATCCGCCG TCCCAGTTCCTGAATGGTCTCAACACTGTCCTGATCCGCCG < 41bp 0.455484836889906 0.83634418440457 0.03282574 0.106491566 prediction 0.67268836880914 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7948208 chr17:7948212 nonsynonymous SNV 0.261 5 25 hm5C_associated_SNPs_99852 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52997 DeepMRMD:0;iRNA_m5C:0 52998 chr7 151817987 151817987 1 + C A rs143156028 151817983 + 151817963 151818003 41 TTGTCTAGATATGTCAGAGACTCGCTCATCAGACCCGCCAC TTGTCTAGATATGTCAGAGACTCGATCATCAGACCCGCCAC < 41bp 0.47153101848952 0.836342507894867 0.065832436 0.3902282 prediction 0.672685015789734 Functional Gain - GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151817983 chr7:151817987 synonymous SNV . 0 25 hm5C_associated_SNPs_99853 0 0 1 0 2 chromatin 0.500248227924509 0.500234371093348 0 0 hm5C_site_52998 DeepMRMD:0;iRNA_m5C:0 52999 chr11 48347118 48347118 1 + T G LUAD 48347115 + 48347095 48347135 41 CTTTGCCTGTGACTTGTACCCTTTGCTGGAAGTTGCCTGCA CTTTGCCTGTGACTTGTACCCTTGGCTGGAAGTTGCCTGCA < 41bp 0.490728364419671 0.836340094702022 0.036920905 0.06390402 prediction 0.672680189404044 Functional Gain - OR4C3 ENSG00000176547 CDS Human protein_coding chr11:48347115 chr11:48347118 nonsynonymous SNV 0.126 3 24 hm5C_associated_SNPs_99854 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_52999 DeepMRMD:0;iRNA_m5C:0 53000 chrX 65238734 65238734 1 + C A UCEC 65238730 + 65238710 65238750 41 GGCCTGGCCTCCTGCAGTGCCACGCTCCGTGTATTTGACAA GGCCTGGCCTCCTGCAGTGCCACGATCCGTGTATTTGACAA < 41bp 0.523536154541932 0.859866967772548 0.07573703 0.15753204 prediction 0.672661626461231 Functional Gain - MIR223 ENSG00000207939 ncRNA_exonic Human other chrX:65238730 chrX:65238734 . . 0 25 hm5C_associated_SNPs_99855 0 0 1 0 0 unknown 0.500231524596473 0.500232573989353 0 2.09878575940792e-06 hm5C_site_53000 DeepMRMD:0;iRNA_m5C:2.09878575940792e-06 53001 chr14 81609772 81609772 1 + C A BRCA 81609768 + 81609748 81609788 41 CCCGCTTTCTCATGTGCAACCTGGCCTTTGCGGATTTCTGC CCCGCTTTCTCATGTGCAACCTGGACTTTGCGGATTTCTGC < 41bp 0.468924869902554 0.836326741991502 0.042256117 0.11993626 prediction 0.672653483983004 Functional Gain - TSHR ENSG00000165409 CDS Human protein_coding chr14:81609768 chr14:81609772 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_99856 0 0 0 0 0 cytosol 0.500231643913326 0.500231643919967 0 1.32820421328006e-11 hm5C_site_53001 DeepMRMD:0;iRNA_m5C:1.32820421328006e-11 53002 chr11 55579755 55579755 1 + C A LUSC 55579751 + 55579731 55579771 41 TTCAGGCAATAGTGGAGATGCTGACAAAGTGGCCACCGTGT TTCAGGCAATAGTGGAGATGCTGAAAAAGTGGCCACCGTGT < 41bp 0.512695186208266 0.848994459230812 0.06434038 0.08045146 prediction 0.672598546045092 Functional Gain - OR5L1 ENSG00000186117 CDS Human other chr11:55579751 chr11:55579755 nonsynonymous SNV 0.578 0 25 hm5C_associated_SNPs_99857 0 0 0 0 0 unknown 0.50023475287533 0.500231955509494 0 0 hm5C_site_53002 DeepMRMD:0;iRNA_m5C:0 53003 chr19 41063119 41063119 1 + C A PAAD 41063115 + 41063095 41063135 41 TGCTGGAGCTCATGGGCACACGGGCCCAGCTGCTGGCCGCC TGCTGGAGCTCATGGGCACACGGGACCAGCTGCTGGCCGCC < 41bp 0.486131925627719 0.836260819464014 0.60521233 0.77958417 prediction 0.672521638928027 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41063115 chr19:41063119 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_99858 0 0 0 0 0 cytosol 0.500231643921106 0.50023164391186 0.34874368 0 hm5C_site_53003 DeepMRMD:0.34874368;iRNA_m5C:0 53004 chr9 137772710 137772710 1 + C A UCEC 137772706 + 137772686 137772726 41 GTGGGGGTCCTGGGCGCTGCCACCCTGCTGCTCTCTTTCCT GTGGGGGTCCTGGGCGCTGCCACCATGCTGCTCTCTTTCCT < 41bp 0.523891651168083 0.86013044966768 0.32273448 0.49593532 prediction 0.672477596999194 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137772706 chr9:137772710 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_99859 0 0 0 0 1 exosome 0.500231643921176 0.500231643929541 0 1.67306168918913e-11 hm5C_site_53004 DeepMRMD:0;iRNA_m5C:1.67306168918913e-11 53005 chr14 61997281 61997281 1 + C A UCEC 61997277 + 61997257 61997297 41 GATGAGGTGGTCTACCCTACCTGGCTCCATGAAGATGCCAC GATGAGGTGGTCTACCCTACCTGGATCCATGAAGATGCCAC < 41bp 0.466249633865104 0.836200367582764 0.021835566 0.124551 prediction 0.672400735165528 Functional Gain - PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997277 chr14:61997281 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_99860 0 0 0 0 1 Cytosol 0.500231643916178 0.500231643921092 0 9.82947057082129e-12 hm5C_site_53005 DeepMRMD:0;iRNA_m5C:9.82947057082129e-12 53006 chr17 1202156 1202156 1 + C A rs115690245 1202152 + 1202132 1202172 41 GGCACCTGTGGGGGGTGCAGCTCCCGGGAAGGAGGCAACTG GGCACCTGTGGGGGGTGCAGCTCCAGGGAAGGAGGCAACTG < 41bp 0.51567297642453 0.851783549814149 0.29640317 0.92789483 prediction 0.672221146779238 Functional Gain - TUSC5 ENSG00000184811 UTR3 Human protein_coding chr17:1202152 chr17:1202156 . . 0 25 hm5C_associated_SNPs_99861 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0.85578966 0 hm5C_site_53006 DeepMRMD:0.85578966;iRNA_m5C:0 53007 chr10 96954317 96954317 1 + C A UCEC 96954313 + 96954293 96954333 41 ATTTGAAGCCTGCTGCTATCCAAACCAAAAATGTGCTACTC ATTTGAAGCCTGCTGCTATCCAAAACAAAAATGTGCTACTC < 41bp 0.527657764259794 0.863726290324749 0.2797848 0.19088608 prediction 0.672137052129911 Functional Gain - ACSM6 ENSG00000173124 CDS Human protein_coding chr10:96954313 chr10:96954317 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99862 0 0 0 0 0 exosome 0.500230900717589 0.500230500135224 0 0 hm5C_site_53007 DeepMRMD:0;iRNA_m5C:0 53008 chr12 52309211 52309211 1 + C A UCEC 52309207 + 52309187 52309227 41 CTTCGGTACACAGGGCAAACCAGCCATTGCCCACCGCGACT CTTCGGTACACAGGGCAAACCAGCAATTGCCCACCGCGACT < 41bp 0.446950426654932 0.836062224865541 0.374886 0.5928827 prediction 0.672124449731082 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309207 chr12:52309211 synonymous SNV . 0 25 hm5C_associated_SNPs_99863 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.50023164392097 0.1857654 0 hm5C_site_53008 DeepMRMD:0.1857654;iRNA_m5C:0 53009 chr1 11347018 11347018 1 + T G rs182097672 11347015 + 11346995 11347035 41 GAGCCCTGAAACGGTAGAGGCACTGCCATCCTTGTGGGATA GAGCCCTGAAACGGTAGAGGCACGGCCATCCTTGTGGGATA < 41bp 0.505063816486835 0.841112671994534 0.17052701 0.3312145 prediction 0.672097711015398 Functional Gain - UBIAD1 ENSG00000120942 UTR3 Human protein_coding chr1:11347015 chr1:11347018 . . 0 24 hm5C_associated_SNPs_99864 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_53009 DeepMRMD:0;iRNA_m5C:0 53010 chr11 20417373 20417373 1 + T G LUAD 20417370 + 20417350 20417390 41 TGTAGAAGATCTTTATGAACCGGTGTCAGTACCCTTCTCAT TGTAGAAGATCTTTATGAACCGGGGTCAGTACCCTTCTCAT < 41bp 0.486240709500724 0.83601174836137 0.35914892 0.9408473 prediction 0.67202349672274 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20417370 chr11:20417373 nonsynonymous SNV 0.022 0 24 hm5C_associated_SNPs_99865 0 0 1 0 1 Ribosome 0.500231643920704 0.500231643922562 0.8816946 3.7159164634204e-12 hm5C_site_53010 DeepMRMD:0.8816946;iRNA_m5C:3.7159164634204e-12 53011 chrX 30269183 30269183 1 + T G UCEC 30269180 + 30269160 30269200 41 ACCAATGATGGAAACCTGAGCAATGATTGGGACTTTCCCAG ACCAATGATGGAAACCTGAGCAAGGATTGGGACTTTCCCAG < 41bp 0.532265038253479 0.868246135310981 0.049919307 0.5257447 prediction 0.671962194115004 Functional Gain - MAGEB1 ENSG00000214107 CDS Human protein_coding chrX:30269180 chrX:30269183 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_99866 0 0 0 0 0 nucleolus 0.500231549207812 0.500231643912567 0.0514893999999999 1.89409508521976e-07 hm5C_site_53011 DeepMRMD:0.0514893999999999;iRNA_m5C:1.89409508521976e-07 53012 chrX 102192427 102192427 1 + C A LUSC 102192423 + 102192403 102192443 41 ACGACCACCATCCTGCTGGACGGCCAGCGGGTGAAGCTGAA ACGACCACCATCCTGCTGGACGGCAAGCGGGTGAAGCTGAA < 41bp 0.484392914167892 0.835945800422208 0.12459391 0.3411462 prediction 0.671891600844416 Functional Gain - RAB40AL ENSG00000102128 CDS Human protein_coding chrX:102192423 chrX:102192427 nonsynonymous SNV 0.985 0 25 hm5C_associated_SNPs_99867 0 0 0 0 0 exosome 0.500231643921093 0.500231643926253 0 1.03206332369155e-11 hm5C_site_53012 DeepMRMD:0;iRNA_m5C:1.03206332369155e-11 53013 chr8 120428828 120428828 1 + C A COAD 120428824 + 120428804 120428844 41 TCCGAAAGCAGTGCCTTTGCCTGACCTTCCTGCTTCTCCAT TCCGAAAGCAGTGCCTTTGCCTGAACTTCCTGCTTCTCCAT < 41bp 0.522500114724206 0.858396184806413 0.3412027 0.29246917 prediction 0.671792140164413 Functional Gain - NOV ENSG00000136999 CDS Human protein_coding chr8:120428824 chr8:120428828 nonsynonymous SNV 0.932 0 25 hm5C_associated_SNPs_99868 0 0 0 0 1 exosome 0.500231628965018 0.500231758422306 0 2.58914576001246e-07 hm5C_site_53013 DeepMRMD:0;iRNA_m5C:2.58914576001246e-07 53014 chr14 23848562 23848562 1 + C A COAD 23848558 + 23848538 23848578 41 GCCTATGATGCCTTCAAGATCTACCGGACTGAGATGGCACC GCCTATGATGCCTTCAAGATCTACAGGACTGAGATGGCACC < 41bp 0.450619769707743 0.835849182297171 0.13505661 0.7760352 prediction 0.671698364594342 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848558 chr14:23848562 synonymous SNV . 0 25 hm5C_associated_SNPs_99869 0 0 0 0 1 exosome 0.500231643902944 0.500228599303828 0.5520704 0 hm5C_site_53014 DeepMRMD:0.5520704;iRNA_m5C:0 53015 chr16 30770552 30770552 1 + G T UCEC 30770556 - 30770536 30770576 41 CTTCCCAGGTGCGGCTGGATCTGTCTTTGACTTACATGGGG CTTCCCAGGTGCGGCTGGATCTGTATTTGACTTACATGGGG < 41bp 0.457366963898216 0.835833052754947 0.108232975 0.1459947 prediction 0.671666105509893 Functional Gain - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30770556 chr16:30770552 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_99870 0 0 0 0 2 chromatin 0.500231645345139 0.500231643921081 0 0 hm5C_site_53015 DeepMRMD:0;iRNA_m5C:0 53016 chr1 86909576 86909576 1 + C A LGG 86909572 + 86909552 86909592 41 CTATGTTTCTAGTTACGTGGCAGGCCAGTGGTCCTCCTGAG CTATGTTTCTAGTTACGTGGCAGGACAGTGGTCCTCCTGAG < 41bp 0.472402006375744 0.835790094722999 0.21948698 0.22332418 prediction 0.671580189445999 Functional Gain - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86909572 chr1:86909576 nonsynonymous SNV 0.131 0 25 hm5C_associated_SNPs_99871 0 0 0 0 0 exosome 0.500231643899544 0.500231643818779 0 0 hm5C_site_53016 DeepMRMD:0;iRNA_m5C:0 53017 chr19 48830117 48830117 1 + C A LAML 48830113 + 48830093 48830133 41 ACTGCAGCCATGTCACTCCTCTTGCTGGTGGTCTCAGCCCT ACTGCAGCCATGTCACTCCTCTTGATGGTGGTCTCAGCCCT < 41bp 0.459797210235294 0.835709653002304 0.1982241 0.23772904 prediction 0.671419306004608 Functional Gain - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48830113 chr19:48830117 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_99872 0 0 1 0 2 Endoplasmic reticulum 0.500231642344514 0.50023173062029 0 1.76551552488746e-07 hm5C_site_53017 DeepMRMD:0;iRNA_m5C:1.76551552488746e-07 53018 chr20 5100291 5100291 1 + G T UCEC 5100295 - 5100275 5100315 41 CACGTCTCTTTGGTGCAGCTCACCCTGCGGTCTGAGGGCTT CACGTCTCTTTGGTGCAGCTCACCATGCGGTCTGAGGGCTT < 41bp 0.447127154295792 0.835671672258179 0.24392572 0.15253562 prediction 0.671343344516358 Functional Gain - PCNA ENSG00000132646 CDS Human protein_coding chr20:5100295 chr20:5100291 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_99873 0 0 1 0 1 Ribosome 0.500231643801571 0.500231640653405 0 0 hm5C_site_53018 DeepMRMD:0;iRNA_m5C:0 53019 chr19 44223942 44223942 1 + C A LUSC 44223938 + 44223918 44223958 41 CCCTGGAGGATGACGAGCCGCAGCCGGAGGTCAGCTTGGAA CCCTGGAGGATGACGAGCCGCAGCAGGAGGTCAGCTTGGAA < 41bp 0.517781442971029 0.853444171184709 0.199925 0.3111122 prediction 0.671325456427361 Functional Gain - IRGC ENSG00000124449 CDS Human protein_coding chr19:44223938 chr19:44223942 nonsynonymous SNV 0.096 0 25 hm5C_associated_SNPs_99874 0 0 0 0 0 unknown 0.500231643921092 0.500231643921094 0 2.22044604925031e-15 hm5C_site_53019 DeepMRMD:0;iRNA_m5C:2.22044604925031e-15 53020 chrX 153609402 153609402 1 + C A COAD 153609398 + 153609378 153609418 41 TCTTCCTCTTCATGGCTCACCCGCCGTGCCATCCGGCCTGA TCTTCCTCTTCATGGCTCACCCGCAGTGCCATCCGGCCTGA < 41bp 0.52689101596895 0.862548056205877 0.03572762 0.022576243 prediction 0.671314080473853 Functional Gain - EMD ENSG00000102119 CDS Human protein_coding chrX:153609398 chrX:153609402 nonsynonymous SNV 0.689 2 25 hm5C_associated_SNPs_99875 0 0 1 0 0 Ribosome 0.500231913875021 0.500231386075796 0 0 hm5C_site_53020 DeepMRMD:0;iRNA_m5C:0 53021 chr8 103572709 103572709 1 + C A COAD 103572705 + 103572685 103572725 41 GAAGAACAACAAATAGAATTCTGGCTTCCTCCTGCTGTAGC GAAGAACAACAAATAGAATTCTGGATTCCTCCTGCTGTAGC < 41bp 0.525380100473318 0.861024437745856 0.7352736 0.85269904 prediction 0.671288674545077 Functional Gain - ODF1 ENSG00000155087 CDS Human protein_coding chr8:103572705 chr8:103572709 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_99876 0 0 0 0 1 unknown 0.500231643930083 0.500231651396877 0.23485088 1.49335885879509e-08 hm5C_site_53021 DeepMRMD:0.23485088;iRNA_m5C:1.49335885879509e-08 53022 chr16 67861893 67861893 1 + C A STAD 67861889 + 67861869 67861909 41 ACCTCGAGAGCCAGAGCCTGCAAGCTAGGAACTTGTGGGCA ACCTCGAGAGCCAGAGCCTGCAAGATAGGAACTTGTGGGCA < 41bp 0.518960440782327 0.854583446860566 0.8605192 0.88678163 prediction 0.671246012156478 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67861889 chr16:67861893 nonsynonymous SNV 0.775 1 25 hm5C_associated_SNPs_99877 0 0 0 1 0 exosome 0.500231643910735 0.500231643917745 0.0525248599999999 1.40198963549665e-11 hm5C_site_53022 DeepMRMD:0.0525248599999999;iRNA_m5C:1.40198963549665e-11 53023 chr1 1469501 1469501 1 + C A rs141788544 1469497 + 1469477 1469517 41 CGGAGCCTGGCCGCGGACCCCTCCCACCCCTGCCTTGCCGG CGGAGCCTGGCCGCGGACCCCTCCAACCCCTGCCTTGCCGG < 41bp 0.480883442535307 0.835616018589193 0.35857606 0.97293687 prediction 0.671232037178386 Functional Gain - ATAD3A ENSG00000197785 UTR3 Human protein_coding chr1:1469497 chr1:1469501 . . 0 25 hm5C_associated_SNPs_99878 0 0 1 0 0 Ribosome 0.50023164392161 0.500231643921858 0.94587374 4.94937424377895e-13 hm5C_site_53023 DeepMRMD:0.94587374;iRNA_m5C:4.94937424377895e-13 53024 chrX 118708684 118708684 1 + C A LUAD 118708680 + 118708660 118708700 41 GACCCCGCTCGCGACATGTCCACCCCGGCTCGGCGGCGCCT GACCCCGCTCGCGACATGTCCACCACGGCTCGGCGGCGCCT < 41bp 0.524373709712859 0.859986344915052 0.06763643 0.037604213 prediction 0.671225270404386 Functional Gain - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118708680 chrX:118708684 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_99879 0 0 1 0 1 Ribosome 0.500231650283066 0.500231614031514 0 0 hm5C_site_53024 DeepMRMD:0;iRNA_m5C:0 53025 chr15 40764405 40764405 1 + C A rs138273557 40764401 + 40764381 40764421 41 TCGCCAGGCCTGGTACCGGCCAGCCAGCCCCGAAAGCCTGC TCGCCAGGCCTGGTACCGGCCAGCAAGCCCCGAAAGCCTGC < 41bp 0.480498431826015 0.835568389773595 0.09580442 0.1500026 prediction 0.671136779547189 Functional Gain - CHST14 ENSG00000169105 CDS Human protein_coding chr15:40764401 chr15:40764405 synonymous SNV . 0 25 hm5C_associated_SNPs_99880 0 0 1 0 0 exosome 0.500231693934547 0.500231643921103 0 0 hm5C_site_53025 DeepMRMD:0;iRNA_m5C:0 53026 chr1 1262727 1262727 1 + C A rs145316505 1262723 + 1262703 1262743 41 GGCGGCCCGCAGAGCGAGCACTACCGCAGCCTGCAGGCCAT GGCGGCCCGCAGAGCGAGCACTACAGCAGCCTGCAGGCCAT < 41bp 0.53015816283732 0.86572396961549 0.44988364 0.9192977 prediction 0.67113161355634 Functional Gain - CPTP ENSG00000224051 CDS Human protein_coding chr1:1262723 chr1:1262727 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99881 0 0 1 0 0 Ribosome 0.500231643920661 0.500231643921153 0.8385954 9.84989867447439e-13 hm5C_site_53026 DeepMRMD:0.8385954;iRNA_m5C:9.84989867447439e-13 53027 chr17 39383156 39383156 1 + C A rs34024914 39383152 + 39383132 39383172 41 TGCCAGCCTTCCTGCTGCAGCACACCCTGCTGCCAGCCCAC TGCCAGCCTTCCTGCTGCAGCACAACCTGCTGCCAGCCCAC < 41bp 0.481411315954593 0.835546757440993 0.051812977 0.08319244 prediction 0.671093514881985 Functional Gain - KRTAP9-2 ENSG00000239886 CDS Human protein_coding chr17:39383152 chr17:39383156 nonsynonymous SNV 0.822 0 25 hm5C_associated_SNPs_99882 0 0 0 0 0 unknown 0.500231643915626 0.500231643921092 0 1.09319220342741e-11 hm5C_site_53027 DeepMRMD:0;iRNA_m5C:1.09319220342741e-11 53028 chr20 55052076 55052076 1 + C A UCEC 55052072 + 55052052 55052092 41 GCTGAAGCTTTCTGATAATCCTGCCTGGGAAGGGGATAAAG GCTGAAGCTTTCTGATAATCCTGCATGGGAAGGGGATAAAG < 41bp 0.554309296858546 0.889844297780503 0.1068908 0.08932683 prediction 0.671070001843914 Functional Gain - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55052072 chr20:55052076 synonymous SNV . 0 25 hm5C_associated_SNPs_99883 0 0 1 0 1 Ribosome 0.500231643921092 0.500236714486577 0 1.0141130969421e-05 hm5C_site_53028 DeepMRMD:0;iRNA_m5C:1.0141130969421e-05 53029 chr5 132084072 132084072 1 + C A UCEC 132084068 + 132084048 132084088 41 TGCGACGCCTTCGAGGAAGTCGTGCTGTGGCTCCTGCGGCT TGCGACGCCTTCGAGGAAGTCGTGATGTGGCTCCTGCGGCT < 41bp 0.465692714669147 0.835526550056438 0.3547266 0.39981738 prediction 0.671053100112875 Functional Gain - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132084068 chr5:132084072 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99884 0 0 0 0 3 nucleus 0.500231644562983 0.500231675037837 0 6.09497079473442e-08 hm5C_site_53029 DeepMRMD:0;iRNA_m5C:6.09497079473442e-08 53030 chr1 154544050 154544050 1 + C A UCEC 154544046 + 154544026 154544066 41 ATCCCCTGTGTGCTCATCACCTCGCTAGCCATCCTTGTCTT ATCCCCTGTGTGCTCATCACCTCGATAGCCATCCTTGTCTT < 41bp 0.53931976411558 0.874840877365812 0.2839244 0.8872775 prediction 0.671042226500465 Functional Gain - CHRNB2 ENSG00000160716 CDS Human protein_coding chr1:154544046 chr1:154544050 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_99885 0 0 0 0 0 nucleus 0.500231643276373 0.50023165150861 0.774555 1.64644748945619e-08 hm5C_site_53030 DeepMRMD:0.774555;iRNA_m5C:1.64644748945619e-08 53031 chr17 38249407 38249407 1 + G T SARC 38249411 - 38249391 38249431 41 CGCTTCACCAAGCTGCTGCTCAAGCTGCCGGACCTGCGGAC CGCTTCACCAAGCTGCTGCTCAAGATGCCGGACCTGCGGAC < 41bp 0.526773823362569 0.862230568826157 0.8242622 0.8874043 prediction 0.670913490927175 Functional Gain - NR1D1;THRA ENSG00000126351;ENSG00000126368 CDS Human other chr17:38249411 chr17:38249407 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_99886 0 0 0 0 0 unknown 0.500231805320479 0.500235073840829 0.1262842 6.53704069919492e-06 hm5C_site_53031 DeepMRMD:0.1262842;iRNA_m5C:6.53704069919492e-06 53032 chr7 75130916 75130916 1 + C A rs200010058 75130912 + 75130892 75130932 41 ACCCGAGGGCCAGGAAGAACCGCTCTCGCATACCCTTGCTC ACCCGAGGGCCAGGAAGAACCGCTATCGCATACCCTTGCTC < 41bp 0.484970557351694 0.835454637244906 0.40050665 0.34369877 prediction 0.670909274489812 Functional Gain - SPDYE5 ENSG00000170092 ncRNA_exonic Human protein_coding chr7:75130912 chr7:75130916 . 0.006 0 25 hm5C_associated_SNPs_99887 0 0 0 0 0 nucleus 0.500231641780683 0.500231643915209 0 4.26905155670454e-09 hm5C_site_53032 DeepMRMD:0;iRNA_m5C:4.26905155670454e-09 53033 chr10 102240874 102240874 1 + C A LUSC 102240870 + 102240850 102240890 41 GGCTGTGATGACTCCCGCAACGGGCAACTGGGTGAGTAGTA GGCTGTGATGACTCCCGCAACGGGAAACTGGGTGAGTAGTA < 41bp 0.537312172621911 0.872753288866824 0.30965805 0.6118831 prediction 0.670882232489827 Functional Gain - WNT8B ENSG00000075290 CDS Human protein_coding chr10:102240870 chr10:102240874 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_99888 0 0 0 0 1 exosome 0.500231643921092 0.500231643921093 0.2237662 6.66133814775094e-16 hm5C_site_53033 DeepMRMD:0.2237662;iRNA_m5C:6.66133814775094e-16 53034 chr19 58549597 58549597 1 + C A LUSC 58549593 + 58549573 58549613 41 AGGTGAGAGGCGCAGGCTTCCTGCCCCGGGCCGGGCCAGGG AGGTGAGAGGCGCAGGCTTCCTGCACCGGGCCGGGCCAGGG < 41bp 0.48049208845694 0.835439257149425 0.123862445 0.18879667 prediction 0.67087851429885 Functional Gain - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58549593 chr19:58549597 synonymous SNV . 0 25 hm5C_associated_SNPs_99889 0 0 0 0 0 exosome 0.500231643923237 0.500231648207312 0 8.56814996730293e-09 hm5C_site_53034 DeepMRMD:0;iRNA_m5C:8.56814996730293e-09 53035 chr1 19584431 19584431 1 + T G GBM 19584428 + 19584408 19584448 41 CCTGGAGCAGTTCCCCCACTCCATGGAGCCACAGCTCAGGC CCTGGAGCAGTTCCCCCACTCCAGGGAGCCACAGCTCAGGC < 41bp 0.475045952374579 0.835407262446717 0.25430298 0.72615004 prediction 0.670814524893434 Functional Gain - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19584428 chr1:19584431 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_99890 0 0 1 0 1 Ribosome 0.500233154517396 0.500231643920626 0.45230008 0 hm5C_site_53035 DeepMRMD:0.45230008;iRNA_m5C:0 53036 chr17 61622463 61622463 1 + C A rs148464755 61622459 + 61622439 61622479 41 GCTGGAGTCCCGCGTGTCCTCAGACCTCAGCCGCATCTTGC GCTGGAGTCCCGCGTGTCCTCAGAACTCAGCCGCATCTTGC < 41bp 0.529969385005501 0.865353708897088 0.8827081 0.8792374 prediction 0.670768647783174 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61622459 chr17:61622463 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_99891 0 0 0 0 1 unknown 0.500231633821193 0.500231665847271 0 6.40521562456087e-08 hm5C_site_53036 DeepMRMD:0;iRNA_m5C:6.40521562456087e-08 53037 chr4 3451140 3451140 1 + C A UCEC 3451136 + 3451116 3451156 41 GCCTCCCAGGCGGCTTGTGGCTCCCTCCTGACCCTCCAGCG GCCTCCCAGGCGGCTTGTGGCTCCATCCTGACCCTCCAGCG < 41bp 0.46536890524057 0.835327455018115 0.12761 0.875491 prediction 0.670654910036229 Functional Gain - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3451136 chr4:3451140 synonymous SNV . 0 25 hm5C_associated_SNPs_99892 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0.750982 2.22044604925031e-16 hm5C_site_53037 DeepMRMD:0.750982;iRNA_m5C:2.22044604925031e-16 53038 chr7 31146205 31146205 1 + T G SKCM 31146202 + 31146182 31146222 41 CGACACCCGTCTCTGGCCAGCAGTGGGGTGAATGGGGGCAC CGACACCCGTCTCTGGCCAGCAGGGGGGTGAATGGGGGCAC < 41bp 0.479306791869397 0.835307954540046 0.5857969 0.9304689 prediction 0.670615909080091 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31146202 chr7:31146205 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_99893 0 0 0 0 1 exosome 0.500231643921043 0.500231643921092 0.689344 9.9253938401489e-14 hm5C_site_53038 DeepMRMD:0.689344;iRNA_m5C:9.9253938401489e-14 53039 chr16 31422734 31422734 1 + C A LUAD 31422730 + 31422710 31422750 41 TTGGGGGATGTGAATGAGGACAAGCTGATAGACGTGGCCAT TTGGGGGATGTGAATGAGGACAAGATGATAGACGTGGCCAT < 41bp 0.468721014148872 0.835296499875446 0.32022762 0.4658549 prediction 0.670592999750891 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422730 chr16:31422734 nonsynonymous SNV 0.395 1 25 hm5C_associated_SNPs_99894 0 0 0 0 0 nucleolus 0.500231643930005 0.500231652139215 0 1.64184204010098e-08 hm5C_site_53039 DeepMRMD:0;iRNA_m5C:1.64184204010098e-08 53040 chr6 50683216 50683216 1 + C A LUSC 50683212 + 50683192 50683232 41 GGCTGCCTCGATGCCTACCGCCGCCATGACCTGTCCCTCAT GGCTGCCTCGATGCCTACCGCCGCAATGACCTGTCCCTCAT < 41bp 0.457328814931605 0.835255681316138 0.8141208 0.6124651 prediction 0.670511362632276 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683212 chr6:50683216 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_99895 0 0 0 0 0 unknown 0.500231680934528 0.500231485024641 0 0 hm5C_site_53040 DeepMRMD:0;iRNA_m5C:0 53041 chr6 90604244 90604244 1 + C A UCEC 90604240 + 90604220 90604260 41 AGAGGAAGTTCACTCCCACTCAACCATAGTGGGGAAAATCT AGAGGAAGTTCACTCCCACTCAACAATAGTGGGGAAAATCT < 41bp 0.519810471485303 0.85505030863192 0.1885162 0.19867703 prediction 0.670479674293235 Functional Gain - GJA10 ENSG00000135355 CDS Human protein_coding chr6:90604240 chr6:90604244 synonymous SNV . 0 25 hm5C_associated_SNPs_99896 0 0 0 0 0 unknown 0.500231641678661 0.500231662098473 0 4.08396225726193e-08 hm5C_site_53041 DeepMRMD:0;iRNA_m5C:4.08396225726193e-08 53042 chr4 57883766 57883766 1 + C A OV 57883762 + 57883742 57883782 41 ACCAGTCTGCTATGGGTAAGCAGGCTATGGGAGTTTACATC ACCAGTCTGCTATGGGTAAGCAGGATATGGGAGTTTACATC < 41bp 0.514186562713759 0.84941390865554 0.5100535 0.6422916 prediction 0.670454691883563 Functional Gain - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57883762 chr4:57883766 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_99897 0 0 1 0 1 Nucleus 0.500231643921075 0.500231643921092 0.2644762 3.39728245535298e-14 hm5C_site_53042 DeepMRMD:0.2644762;iRNA_m5C:3.39728245535298e-14 53043 chr4 41984330 41984330 1 + C A LUAD 41984326 + 41984306 41984346 41 GTGTTCACACAAGAGTTAACCAGCCTGGCATGCTCTGCAGT GTGTTCACACAAGAGTTAACCAGCATGGCATGCTCTGCAGT < 41bp 0.521952995773685 0.857176919327678 0.7236203 0.5972243 prediction 0.670447847107986 Functional Gain - DCAF4L1 ENSG00000182308 CDS Human protein_coding chr4:41984326 chr4:41984330 nonsynonymous SNV 0.043 3 25 hm5C_associated_SNPs_99898 0 0 0 0 0 Nucleus 0.500231689053012 0.500332431461562 0 0.000201484817099917 hm5C_site_53043 DeepMRMD:0;iRNA_m5C:0.000201484817099917 53044 chr12 57864806 57864806 1 + T G UCEC 57864803 + 57864783 57864823 41 GGGCCTGGTCCACCCACCAACTATGGCCCCAACCCCTGTCC GGGCCTGGTCCACCCACCAACTAGGGCCCCAACCCCTGTCC < 41bp 0.462194411486669 0.835156220339704 0.3442525 0.76452136 prediction 0.670312440679408 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57864803 chr12:57864806 stopgain 0.775 0 24 hm5C_associated_SNPs_99899 0 0 0 0 0 nucleoplasm 0.500231638744406 0.500231643921092 0.52904272 1.03533728257332e-08 hm5C_site_53044 DeepMRMD:0.52904272;iRNA_m5C:1.03533728257332e-08 53045 chr13 88327723 88327723 1 + C A THYM 88327719 + 88327699 88327739 41 ATAGCTGGATGCTGCAGACTCTAGCGTTTGCTGTAACATCT ATAGCTGGATGCTGCAGACTCTAGAGTTTGCTGTAACATCT < 41bp 0.475102870445354 0.835105582141469 0.21459147 0.21919945 prediction 0.670211164282938 Functional Gain - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88327719 chr13:88327723 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_99900 0 0 1 0 1 nucleus 0.500231649020004 0.500231089841134 0 0 hm5C_site_53045 DeepMRMD:0;iRNA_m5C:0 53046 chr12 113875787 113875787 1 + C A COAD 113875783 + 113875763 113875803 41 GGCTCCAGGCCGAGGGCTGCCTGCCCCCTTCCCTGACTTCA GGCTCCAGGCCGAGGGCTGCCTGCACCCTTCCCTGACTTCA < 41bp 0.541290140175846 0.876379128040515 0.06316638 0.08802119 prediction 0.670177975729337 Functional Gain - SDSL ENSG00000139410 CDS Human protein_coding chr12:113875783 chr12:113875787 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99901 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_53046 DeepMRMD:0;iRNA_m5C:0 53047 chr11 7111186 7111186 1 + C A rs143507713 7111182 + 7111162 7111202 41 GGGGATCATCTGAGCAGAGGCTCCCATCGAGAGCCCTTTGA GGGGATCATCTGAGCAGAGGCTCCAATCGAGAGCCCTTTGA < 41bp 0.454106642980583 0.835072645412323 0.039457113 0.9053118 prediction 0.670145290824646 Functional Gain - RBMXL2 ENSG00000170748 CDS Human protein_coding chr11:7111182 chr11:7111186 nonsynonymous SNV 0.822 1 25 hm5C_associated_SNPs_99902 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.8106236 0 hm5C_site_53047 DeepMRMD:0.8106236;iRNA_m5C:0 53048 chr19 34984527 34984527 1 + C A KIRC 34984523 + 34984503 34984543 41 TCTACTGCGTGCGAGACTATCACACGTGAGTTGCTGGTGCT TCTACTGCGTGCGAGACTATCACAAGTGAGTTGCTGGTGCT < 41bp 0.458027607880579 0.835068032141312 0.19867298 0.27988723 prediction 0.670136064282624 Functional Gain - WTIP ENSG00000142279 CDS Human protein_coding chr19:34984523 chr19:34984527 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_99903 0 0 1 0 1 nucleus 0.500231351875487 0.500231530000038 0 3.56249103772299e-07 hm5C_site_53048 DeepMRMD:0;iRNA_m5C:3.56249103772299e-07 53049 chr5 68555712 68555712 1 + C A LIHC 68555708 + 68555688 68555728 41 TAAAACTGGCAGATTTTGGCCTGGCCAAATCTTTTGGGAGC TAAAACTGGCAGATTTTGGCCTGGACAAATCTTTTGGGAGC < 41bp 0.463303797358275 0.835053981623791 0.36838096 0.44465965 prediction 0.670107963247581 Functional Gain - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68555708 chr5:68555712 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99904 0 0 1 0 2 Cytosol 0.500186621281192 0.500231596355197 0 8.99501480098319e-05 hm5C_site_53049 DeepMRMD:0;iRNA_m5C:8.99501480098319e-05 53050 chr1 22925343 22925343 1 + C A BLCA 22925339 + 22925319 22925359 41 GTCCCCCTGCAGACCCACGACGGGCAGTTCACCATCATGCA GTCCCCCTGCAGACCCACGACGGGAAGTTCACCATCATGCA < 41bp 0.465501770338336 0.835047663157361 0.34010088 0.50294423 prediction 0.670095326314722 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22925339 chr1:22925343 nonsynonymous SNV 0.985 3 25 hm5C_associated_SNPs_99905 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.00588845999999998 0 hm5C_site_53050 DeepMRMD:0.00588845999999998;iRNA_m5C:0 53051 chrX 16170655 16170655 1 + T G UCEC 16170652 + 16170632 16170672 41 GCCAGCCTGGCCTGATCATCCGGTCTCACAGCACTGGAAGG GCCAGCCTGGCCTGATCATCCGGGCTCACAGCACTGGAAGG < 41bp 0.477015139766509 0.835034196827465 0.7024166 0.9213973 prediction 0.67006839365493 Functional Gain - GRPR ENSG00000126010 CDS Human protein_coding chrX:16170652 chrX:16170655 nonsynonymous SNV 0.901 0 24 hm5C_associated_SNPs_99906 0 0 0 0 0 chromatin 0.500231643953345 0.500231651781469 0.4379614 1.56562467434895e-08 hm5C_site_53051 DeepMRMD:0.4379614;iRNA_m5C:1.56562467434895e-08 53052 chr5 140517049 140517049 1 + C A LUAD 140517045 + 140517025 140517065 41 TGCCGCTGCCGGAGGCGGCCCCGGCCCAGGCCCAGGCCGAC TGCCGCTGCCGGAGGCGGCCCCGGACCAGGCCCAGGCCGAC < 41bp 0.503614742040212 0.838626922927441 0.85886097 0.87177753 prediction 0.670024361774459 Functional Gain - PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140517045 chr5:140517049 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99907 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.0258331200000002 0 hm5C_site_53052 DeepMRMD:0.0258331200000002;iRNA_m5C:0 53053 chr12 117013834 117013834 1 + C A rs539169146 117013830 + 117013810 117013850 41 ACTTATTCGAGAGCAGCATCCAACCAAAATCCCGGTGATAA ACTTATTCGAGAGCAGCATCCAACAAAAATCCCGGTGATAA < 41bp 0.463636870370416 0.83500405076038 0.10734135 0.07556343 prediction 0.670008101520761 Functional Gain - MAP1LC3B2 ENSG00000171471 CDS Human other chr12:117013830 chr12:117013834 synonymous SNV . 0 25 hm5C_associated_SNPs_99908 0 0 1 0 0 Ribosome 0.500231643919392 0.500231643921092 0 3.40127925824163e-12 hm5C_site_53053 DeepMRMD:0;iRNA_m5C:3.40127925824163e-12 53054 chr20 5844121 5844121 1 + C A rs1699232 5844117 + 5844097 5844137 41 GAAAGACCTGTAACTGGTGCCGGGCAGTGTGCAGGGTAGTA GAAAGACCTGTAACTGGTGCCGGGAAGTGTGCAGGGTAGTA < 41bp 0.521981166483129 0.856960241061748 0.43153727 0.7715822 prediction 0.669958149157238 Functional Gain - C20orf196 ENSG00000171984 UTR3 Human protein_coding chr20:5844117 chr20:5844121 . . 0 25 hm5C_associated_SNPs_99909 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921081 0.5431644 0 hm5C_site_53054 DeepMRMD:0.5431644;iRNA_m5C:0 53055 chr18 580598 580598 1 + C A LUAD 580594 + 580574 580614 41 GCCATGAGAGCGCTGGGCTTCGAACCCAGGAAGGAAGAGAT GCCATGAGAGCGCTGGGCTTCGAAACCAGGAAGGAAGAGAT < 41bp 0.477091927519369 0.83497672944238 0.23198259 0.5474627 prediction 0.66995345888476 Functional Gain - CETN1 ENSG00000177143 CDS Human protein_coding chr18:580594 chr18:580598 nonsynonymous SNV 0.969 3 25 hm5C_associated_SNPs_99910 0 0 0 0 0 unknown 0.500231643572965 0.500231643921092 0.0949253999999999 6.96253721343965e-10 hm5C_site_53055 DeepMRMD:0.0949253999999999;iRNA_m5C:6.96253721343965e-10 53056 chr9 125486888 125486888 1 + T G STAD 125486885 + 125486865 125486905 41 GGTGATGACTGAGACCTTAGCTGTCATTGTGACCCCCTTCC GGTGATGACTGAGACCTTAGCTGGCATTGTGACCCCCTTCC < 41bp 0.528121245281246 0.863083226316064 0.067929775 0.19459027 prediction 0.669923962069637 Functional Gain - OR1L4 ENSG00000136939 CDS Human protein_coding chr9:125486885 chr9:125486888 nonsynonymous SNV 0.001 4 24 hm5C_associated_SNPs_99911 0 0 0 0 0 unknown 0.50023164393477 0.50023164390854 0 0 hm5C_site_53056 DeepMRMD:0;iRNA_m5C:0 53057 chr7 76121568 76121568 1 + C A LUAD 76121564 + 76121544 76121584 41 CCAGCAGAGTCCAGCAGGCGCTCGCAGGTAGGTGCCTGACC CCAGCAGAGTCCAGCAGGCGCTCGAAGGTAGGTGCCTGACC < 41bp 0.450538917139697 0.834906018618266 0.45867804 0.67071694 prediction 0.669812037236532 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76121564 chr7:76121568 nonsynonymous SNV 0.840 3 25 hm5C_associated_SNPs_99912 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921093 0.34143388 2.22044604925031e-16 hm5C_site_53057 DeepMRMD:0.34143388;iRNA_m5C:2.22044604925031e-16 53058 chr11 75508318 75508318 1 + C A CESC 75508314 + 75508294 75508334 41 TGAGTCTCTGAGCTCCATGCCTGGCAAGAATGCAGTCACCC TGAGTCTCTGAGCTCCATGCCTGGAAAGAATGCAGTCACCC < 41bp 0.44397526820818 0.834901191798307 0.13870248 0.25927496 prediction 0.669802383596614 Functional Gain - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508314 chr11:75508318 synonymous SNV . 0 25 hm5C_associated_SNPs_99913 0 0 1 0 1 Ribosome 0.500231645062136 0.500231643912672 0 0 hm5C_site_53058 DeepMRMD:0;iRNA_m5C:0 53059 chr5 139218323 139218323 1 + C A LUAD 139218319 + 139218299 139218339 41 GCTCCATGAAGAAGTTCTGTCGGCCCCTGCTGCCCTCCTGC GCTCCATGAAGAAGTTCTGTCGGCACCTGCTGCCCTCCTGC < 41bp 0.529899706921223 0.864799104792893 0.40344018 0.44664684 prediction 0.669798795743339 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139218319 chr5:139218323 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_99914 0 0 0 0 1 exosome 0.500231643921092 0.5002316439215 0 8.15347789284715e-13 hm5C_site_53059 DeepMRMD:0;iRNA_m5C:8.15347789284715e-13 53060 chr19 50200612 50200612 1 + C A KIRP 50200608 + 50200588 50200628 41 CTTTCTCACCGGTGTGTTTCCTGCCAGCCCCCTCAGTTGGC CTTTCTCACCGGTGTGTTTCCTGCAAGCCCCCTCAGTTGGC < 41bp 0.442683720334727 0.834873070289742 0.19568145 0.35663202 prediction 0.669746140579484 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50200608 chr19:50200612 synonymous SNV . 0 25 hm5C_associated_SNPs_99915 0 0 0 0 1 exosome 0.500231643933653 0.500231664028003 0 4.01886988132816e-08 hm5C_site_53060 DeepMRMD:0;iRNA_m5C:4.01886988132816e-08 53061 chr17 45286872 45286872 1 + C A UCEC 45286868 + 45286848 45286888 41 TCCAGCCCCTGCACCAGCCCCTGCCCCAGCTCCTGAGGCTC TCCAGCCCCTGCACCAGCCCCTGCACCAGCTCCTGAGGCTC < 41bp 0.435374096230655 0.834844580530609 0.4427966 0.37338108 prediction 0.669689161061217 Functional Gain - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45286868 chr17:45286872 synonymous SNV . 0 25 hm5C_associated_SNPs_99916 0 0 1 0 1 Cytosol 0.500231643365879 0.500231643921092 0 1.11042730566169e-09 hm5C_site_53061 DeepMRMD:0;iRNA_m5C:1.11042730566169e-09 53062 chr1 146650091 146650091 1 + C A rs188903899 146650087 + 146650067 146650107 41 CAGCCACCTGAAGAAGCAGGCAGGCCCAGCTTCAGTGCCTC CAGCCACCTGAAGAAGCAGGCAGGACCAGCTTCAGTGCCTC < 41bp 0.508672411660256 0.843472775393616 0.7971362 0.8303201 prediction 0.66960072746672 Functional Gain - PDIA3P1 ENSG00000180867 ncRNA_exonic Human processed_pseudogene chr1:146650087 chr1:146650091 . . 0 25 hm5C_associated_SNPs_99917 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.0663678000000001 0 hm5C_site_53062 DeepMRMD:0.0663678000000001;iRNA_m5C:0 53063 chr1 235602123 235602123 1 + C A CHOL 235602119 + 235602099 235602139 41 AGGCGGAGAGCTGAGCTTGACTACCGAAAAGCTTTTGGAAA AGGCGGAGAGCTGAGCTTGACTACAGAAAAGCTTTTGGAAA < 41bp 0.443844065579449 0.83478792111227 0.12218943 0.84118044 prediction 0.66957584222454 Functional Gain - TBCE ENSG00000116957 CDS Human protein_coding chr1:235602119 chr1:235602123 synonymous SNV . 0 25 hm5C_associated_SNPs_99918 0 0 1 0 1 chromatin 0.500231643920861 0.500231643364493 0.68236088 0 hm5C_site_53063 DeepMRMD:0.68236088;iRNA_m5C:0 53064 chr15 89659617 89659617 1 + C A UCEC 89659613 + 89659593 89659633 41 CCGTGTTTGATGGAGTGAAGCTGGCTGCAGTGGCTGCTGTG CCGTGTTTGATGGAGTGAAGCTGGATGCAGTGGCTGCTGTG < 41bp 0.533000096222617 0.867787639533681 0.8043175 0.8911996 prediction 0.669575086622129 Functional Gain - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89659613 chr15:89659617 nonsynonymous SNV 0.959 4 25 hm5C_associated_SNPs_99919 0 0 1 2 1 Nucleus 0.500231608016944 0.500231624804427 0.1737642 3.35749659186035e-08 hm5C_site_53064 DeepMRMD:0.1737642;iRNA_m5C:3.35749659186035e-08 53065 chr19 808631 808631 1 + C A rs1058275 808627 + 808607 808647 41 GCACCAGAACGTGCAGCTGCCCCGCGAGGGCCAGGAGGACC GCACCAGAACGTGCAGCTGCCCCGAGAGGGCCAGGAGGACC < 41bp 0.44981549917649 0.834756055687607 0.05182013 0.05103472 prediction 0.669512111375213 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:808627 chr19:808631 synonymous SNV . 0 25 hm5C_associated_SNPs_99920 0 0 1 0 1 Cytosol 0.500231643917787 0.500231643920825 0 6.07558447995871e-12 hm5C_site_53065 DeepMRMD:0;iRNA_m5C:6.07558447995871e-12 53066 chr7 143141462 143141462 1 + T G SKCM 143141459 + 143141439 143141479 41 CAGCAACTGCAGGCTGAGAGCTGTGCTGAAGAGTCGTCGTT CAGCAACTGCAGGCTGAGAGCTGGGCTGAAGAGTCGTCGTT < 41bp 0.496829415585309 0.834746619929464 0.43606815 0.8935141 prediction 0.669493239858928 Functional Gain - TAS2R60 ENSG00000185899 CDS Human protein_coding chr7:143141459 chr7:143141462 nonsynonymous SNV 0.020 2 24 hm5C_associated_SNPs_99921 0 0 0 0 0 exosome 0.500232295385832 0.500231643921137 0.7870282 0 hm5C_site_53066 DeepMRMD:0.7870282;iRNA_m5C:0 53067 chr14 52734551 52734551 1 + C A rs41311442 52734547 + 52734527 52734567 41 CACGCCATGAAGTCGCCGTTCTACCGCTGCCAGAACACCAC CACGCCATGAAGTCGCCGTTCTACAGCTGCCAGAACACCAC < 41bp 0.519261413212431 0.854007105759691 0.038847446 0.14609453 prediction 0.669491385094521 Functional Gain - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52734547 chr14:52734551 nonsynonymous SNV 0.069 0 25 hm5C_associated_SNPs_99922 0 0 0 0 0 exosome 0.500231644589105 0.500231643921092 0 0 hm5C_site_53067 DeepMRMD:0;iRNA_m5C:0 53068 chr16 23695329 23695329 1 + C A COAD 23695325 + 23695305 23695345 41 CCTGCCCGTCTCCCCATCACCTGCCTGACCATTCCACCAAG CCTGCCCGTCTCCCCATCACCTGCATGACCATTCCACCAAG < 41bp 0.560987883697371 0.89571787758277 0.16734442 0.31427133 prediction 0.669459987770798 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23695325 chr16:23695329 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_99923 0 0 1 0 1 Ribosome 0.500231661643871 0.500231639294027 0 0 hm5C_site_53068 DeepMRMD:0;iRNA_m5C:0 53069 chr20 44330779 44330779 1 + C A UCEC 44330775 + 44330755 44330795 41 CTGACACCATGAAGCCTGTGCTGCCTCTCCAGTTCCTGGTG CTGACACCATGAAGCCTGTGCTGCATCTCCAGTTCCTGGTG < 41bp 0.477090415936285 0.834716770181449 0.014283717 0.0344249 prediction 0.669433540362899 Functional Gain - WFDC13 ENSG00000168634 CDS Human protein_coding chr20:44330775 chr20:44330779 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_99924 0 0 0 0 1 unknown 0.500231643905742 0.500231643921042 0 3.06006331385333e-11 hm5C_site_53069 DeepMRMD:0;iRNA_m5C:3.06006331385333e-11 53070 chrX 34961615 34961615 1 + C A LUAD 34961611 + 34961591 34961631 41 CCTCCCAAGACTCGGGTGTCCAGTCTCCGCCCAGAGCCTCC CCTCCCAAGACTCGGGTGTCCAGTATCCGCCCAGAGCCTCC < 41bp 0.520267349512444 0.854982083174575 0.082852274 0.09642103 prediction 0.669429467324261 Functional Gain - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961611 chrX:34961615 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_99925 0 0 0 0 0 unknown 0.500231643921094 0.500231643921092 0 0 hm5C_site_53070 DeepMRMD:0;iRNA_m5C:0 53071 chr11 34982013 34982013 1 + C A rs139052284 34982009 + 34981989 34982029 41 CGCAATATTCTGGAAAAACACTCACTGGATGCTAGCCAGGG CGCAATATTCTGGAAAAACACTCAATGGATGCTAGCCAGGG < 41bp 0.43384091854191 0.8346142323612 0.033336908 0.3219275 prediction 0.6692284647224 Functional Gain - PDHX ENSG00000110435 CDS Human protein_coding chr11:34982009 chr11:34982013 nonsynonymous SNV 0.320 3 25 hm5C_associated_SNPs_99926 1 0 1 0 1 Ribosome 0.500231641241529 0.50023164392041 0 5.35776267795995e-09 hm5C_site_53071 DeepMRMD:0;iRNA_m5C:5.35776267795995e-09 not specified not specified 53072 chr22 32439311 32439311 1 + C A LUAD 32439307 + 32439287 32439327 41 AGCCCCAAGACCACCGCGGTCACCCGGCCTGTTGAGACCCA AGCCCCAAGACCACCGCGGTCACCAGGCCTGTTGAGACCCA < 41bp 0.452358643591526 0.834584484603865 0.33189154 0.5642046 prediction 0.669168969207729 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32439307 chr22:32439311 synonymous SNV . 0 25 hm5C_associated_SNPs_99927 0 0 0 0 1 Nucleus 0.500231643942869 0.500231643921092 0.1284092 0 hm5C_site_53072 DeepMRMD:0.1284092;iRNA_m5C:0 53073 chr11 60777058 60777058 1 + C A LUAD 60777054 + 60777034 60777074 41 TTCCCTGCAGAGCACCAGTCCTGGCGCCTGACAGGGGGCGC TTCCCTGCAGAGCACCAGTCCTGGAGCCTGACAGGGGGCGC < 41bp 0.47525778041285 0.834575934566999 0.5389225 0.36534953 prediction 0.669151869133998 Functional Gain - CD6 ENSG00000013725 CDS Human protein_coding chr11:60777054 chr11:60777058 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_99928 0 0 0 0 1 exosome 0.500231643720584 0.500231643908529 0 3.75889985804179e-10 hm5C_site_53073 DeepMRMD:0;iRNA_m5C:3.75889985804179e-10 53074 chr16 3188486 3188486 1 + C A rs151044233 3188482 + 3188462 3188502 41 GATCCCAGGCCACGGGGCCTCCCCCGACGGTGGGGGCACGG GATCCCAGGCCACGGGGCCTCCCCAGACGGTGGGGGCACGG < 41bp 0.482515075327254 0.834564351098021 0.21439397 0.23505396 prediction 0.669128702196042 Functional Gain - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3188482 chr16:3188486 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_99929 0 0 0 0 2 chromatin 0.500231643921093 0.500231564815325 0 0 hm5C_site_53074 DeepMRMD:0;iRNA_m5C:0 53075 chr11 60702171 60702171 1 + C A rs140313442 60702167 + 60702147 60702187 41 CCACACGCCCGCGTGCTGGACTCGCGTGTAGCCTCTCTGGA CCACACGCCCGCGTGCTGGACTCGAGTGTAGCCTCTCTGGA < 41bp 0.475938483094124 0.834544720206952 0.37394422 0.8125753 prediction 0.669089440413904 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60702167 chr11:60702171 nonsynonymous SNV 0.090 3 25 hm5C_associated_SNPs_99930 0 0 1 0 1 Ribosome 0.500231711232504 0.50023148426076 0.6251506 0 hm5C_site_53075 DeepMRMD:0.6251506;iRNA_m5C:0 Hypertension 53076 chr17 45363775 45363775 1 + C A LUAD 45363771 + 45363751 45363791 41 GTGGCTTTGATGCCATCATGCAGGCTACAGTCTGTGATGTG GTGGCTTTGATGCCATCATGCAGGATACAGTCTGTGATGTG < 41bp 0.533231326797052 0.867760196080734 0.38116723 0.34639454 prediction 0.669057738567365 Functional Gain - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45363771 chr17:45363775 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_99931 0 0 0 0 1 cytosol 0.500231645815872 0.500231643920971 0 0 hm5C_site_53076 DeepMRMD:0;iRNA_m5C:0 53077 chr2 85536253 85536253 1 + C A STAD 85536249 + 85536229 85536269 41 TCCCACGGGAGCATGCTGGACTCCCCGGCCACTCCCTCTGC TCCCACGGGAGCATGCTGGACTCCACGGCCACTCCCTCTGC < 41bp 0.448336750241591 0.83447333035285 0.056848288 0.9137695 prediction 0.668946660705699 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85536249 chr2:85536253 nonsynonymous SNV 0.853 4 25 hm5C_associated_SNPs_99932 0 0 0 0 0 Endoplasmic reticulum 0.500231648489492 0.500231705825375 0.827539 1.1467176475044e-07 hm5C_site_53077 DeepMRMD:0.827539;iRNA_m5C:1.1467176475044e-07 53078 chr1 156146546 156146546 1 + C A rs76381440 156146542 + 156146522 156146562 41 CTGGCTGCCCAGCAGTCCTACTGGCCCCACTTTGTCACTGT CTGGCTGCCCAGCAGTCCTACTGGACCCACTTTGTCACTGT < 41bp 0.463369437738797 0.83446961872804 0.036829352 0.086734235 prediction 0.66893923745608 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156146542 chr1:156146546 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_99933 0 0 0 0 0 exosome 0.500231649079133 0.500231641594104 0 0 hm5C_site_53078 DeepMRMD:0;iRNA_m5C:0 53079 chr15 101434212 101434212 1 + T G HNSC 101434209 + 101434189 101434229 41 AAGCTGGCACCCGCCCTCTGCTGTGGGAACACCATGGTCCT AAGCTGGCACCCGCCCTCTGCTGGGGGAACACCATGGTCCT < 41bp 0.53361778320157 0.868031149131592 0.18707103 0.8876755 prediction 0.668826731860043 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101434209 chr15:101434212 nonsynonymous SNV 0.992 4 24 hm5C_associated_SNPs_99934 0 0 0 0 2 Nucleus 0.500231643921106 0.500231643921138 0.775351 6.3726801613484e-14 hm5C_site_53079 DeepMRMD:0.775351;iRNA_m5C:6.3726801613484e-14 53080 chr20 17971213 17971213 1 + C A rs566327913 17971209 + 17971189 17971229 41 AGGGAGGACACATCAGCCCACTACCGCTGCCAACACCAATG AGGGAGGACACATCAGCCCACTACAGCTGCCAACACCAATG < 41bp 0.481497313461505 0.83428855531326 0.0964351 0.15212971 prediction 0.668577110626521 Functional Gain - MGME1 ENSG00000125871 UTR3 Human protein_coding chr20:17971209 chr20:17971213 . . 0 25 hm5C_associated_SNPs_99935 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921187 0 1.89848137210902e-13 hm5C_site_53080 DeepMRMD:0;iRNA_m5C:1.89848137210902e-13 53081 chr20 36932694 36932694 1 + C A LUAD 36932690 + 36932670 36932710 41 GGTGCTGGTCGCCATAGGCACCGCCGTGACAGCGGCCGTCA GGTGCTGGTCGCCATAGGCACCGCAGTGACAGCGGCCGTCA < 41bp 0.470318789973305 0.834271842198786 0.19370362 0.16659245 prediction 0.668543684397572 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36932690 chr20:36932694 synonymous SNV . 0 25 hm5C_associated_SNPs_99936 0 0 0 0 1 Nucleus 0.500231643859611 0.500233396503839 0 3.50528845571851e-06 hm5C_site_53081 DeepMRMD:0;iRNA_m5C:3.50528845571851e-06 53082 chr19 19307776 19307776 1 + C A GBM 19307772 + 19307752 19307792 41 GCCTGTTGTCTGTTTCCCAGCAGGCAGCTCCCTGAAGCACT GCCTGTTGTCTGTTTCCCAGCAGGAAGCTCCCTGAAGCACT < 41bp 0.480660125134651 0.834245008065528 0.29908034 0.3422016 prediction 0.668490016131056 Functional Gain - RFXANK ENSG00000064490 CDS Human protein_coding chr19:19307772 chr19:19307776 synonymous SNV . 0 25 hm5C_associated_SNPs_99937 0 0 1 0 3 Ribosome 0.500231527848348 0.500231643412021 0 2.31127345706739e-07 hm5C_site_53082 DeepMRMD:0;iRNA_m5C:2.31127345706739e-07 53083 chr2 105859391 105859391 1 + C A KIRC 105859387 + 105859367 105859407 41 AGCGGATCCGAAGGAGAATCCAGCCAAGCACAGTCTACGTG AGCGGATCCGAAGGAGAATCCAGCAAAGCACAGTCTACGTG < 41bp 0.526892111738503 0.861121454840761 0.30693632 0.12340009 prediction 0.668458686204516 Functional Gain - GPR45 ENSG00000135973 CDS Human protein_coding chr2:105859387 chr2:105859391 nonsynonymous SNV 0.946 4 25 hm5C_associated_SNPs_99938 0 0 0 0 0 unknown 0.500231643921092 0.500231643954908 0 6.76307898572759e-11 hm5C_site_53083 DeepMRMD:0;iRNA_m5C:6.76307898572759e-11 53084 chr19 18976564 18976564 1 + C A COAD 18976560 + 18976540 18976580 41 CCTTCCCAGATGAGCCAGCCCGGCCTCTCCCAGCCGGAGCT CCTTCCCAGATGAGCCAGCCCGGCATCTCCCAGCCGGAGCT < 41bp 0.461381962954991 0.834216149943693 0.12876049 0.3570842 prediction 0.668432299887386 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18976560 chr19:18976564 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99939 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_53084 DeepMRMD:0;iRNA_m5C:0 53085 chr20 43034742 43034742 1 + C A BLCA 43034738 + 43034718 43034758 41 ACCAACCTCAACGCGCCCAACAGCCTGGGTGTCAGCGCCCT ACCAACCTCAACGCGCCCAACAGCATGGGTGTCAGCGCCCT < 41bp 0.548169354689762 0.882376946029505 0.3893657 0.60196793 prediction 0.668415182679486 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034738 chr20:43034742 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_99940 0 0 0 0 1 Ribosome 0.50023164392119 0.500231643925466 0.20393586 8.55315818171221e-12 hm5C_site_53085 DeepMRMD:0.20393586;iRNA_m5C:8.55315818171221e-12 53086 chr2 106510164 106510164 1 + C A rs141859585 106510160 + 106510140 106510180 41 GTGCGATGGCAGTGAGGAGACTGCCCAGTGCCTTTGGGGCT GTGCGATGGCAGTGAGGAGACTGCACAGTGCCTTTGGGGCT < 41bp 0.527786197171747 0.861989052725265 0.3181337 0.4127087 prediction 0.668405711107037 Functional Gain - NCK2 ENSG00000071051 UTR3 Human protein_coding chr2:106510160 chr2:106510164 . . 0 25 hm5C_associated_SNPs_99941 0 0 1 2 0 Ribosome 0.500231643921136 0.500231644192148 0 5.42023759209087e-10 hm5C_site_53086 DeepMRMD:0;iRNA_m5C:5.42023759209087e-10 53087 chr12 662534 662534 1 + C A KIRP 662530 + 662510 662550 41 GCCTGCGGAAACTCCTGGCTCAGCCCCGGGAGGGCCTGCTG GCCTGCGGAAACTCCTGGCTCAGCACCGGGAGGGCCTGCTG < 41bp 0.453975113539028 0.834201233187397 0.10309479 0.22922748 prediction 0.668402466374795 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:662530 chr12:662534 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_99942 0 0 0 0 0 exosome 0.500231643921097 0.500231643921093 0 0 hm5C_site_53087 DeepMRMD:0;iRNA_m5C:0 53088 chr1 246929399 246929399 1 + C A GBM 246929395 + 246929375 246929415 41 CTACCCCCATAGCTATGGTTCAGGCAGCCATGACTCTTCTA CTACCCCCATAGCTATGGTTCAGGAAGCCATGACTCTTCTA < 41bp 0.468917325456559 0.834195306610977 0.21542445 0.37167907 prediction 0.668390613221954 Functional Gain - SCCPDH ENSG00000143653 CDS Human protein_coding chr1:246929395 chr1:246929399 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_99943 0 0 1 0 2 Ribosome 0.500231643921093 0.500231643921094 0 1.99840144432528e-15 hm5C_site_53088 DeepMRMD:0;iRNA_m5C:1.99840144432528e-15 53089 chr6 31541186 31541186 1 + C A SKCM 31541182 + 31541162 31541202 41 AGTGGCATCTACTTCGTCTACTCCCAGGTGGTCTTCTCTGG AGTGGCATCTACTTCGTCTACTCCAAGGTGGTCTTCTCTGG < 41bp 0.500925313123826 0.835113218620768 0.04031807 0.9462092 prediction 0.668375810993883 Functional Gain - LTA ENSG00000226979 CDS Human protein_coding chr6:31541182 chr6:31541186 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_99944 0 0 0 0 1 exosome 0.500231643920828 0.500231643920996 0.8924184 3.34843264226947e-13 hm5C_site_53089 DeepMRMD:0.8924184;iRNA_m5C:3.34843264226947e-13 53090 chr4 170541724 170541724 1 + C A rs79371927 170541720 + 170541700 170541740 41 ACCTTTCGGGCTCCTGACTCCTGCCGCTTCTCTTCCCCTTC ACCTTTCGGGCTCCTGACTCCTGCAGCTTCTCTTCCCCTTC < 41bp 0.502362159615706 0.836534034292329 0.4170554 0.8052138 prediction 0.668343749353244 Functional Gain - CLCN3 ENSG00000109572 UTR5 Human protein_coding chr4:170541720 chr4:170541724 . . 0 25 hm5C_associated_SNPs_99945 0 0 1 0 0 Ribosome 0.500231643921266 0.50023357919971 0.6104276 3.87055688677584e-06 hm5C_site_53090 DeepMRMD:0.6104276;iRNA_m5C:3.87055688677584e-06 53091 chr15 22382866 22382866 1 + T G ACC 22382863 + 22382843 22382883 41 TCGCCATCTGCCGGCCTCTGCACTGTTCAACTGTCATGAAC TCGCCATCTGCCGGCCTCTGCACGGTTCAACTGTCATGAAC < 41bp 0.52983081038922 0.863965535376603 0.27519926 0.637973 prediction 0.668269449974767 Functional Gain - OR4N4 ENSG00000183706 CDS Human protein_coding chr15:22382863 chr15:22382866 nonsynonymous SNV 0.092 2 24 hm5C_associated_SNPs_99946 0 0 0 0 0 unknown 0.500171461100416 0.500231729670668 0.275946 0.00012053714050464 hm5C_site_53091 DeepMRMD:0.275946;iRNA_m5C:0.00012053714050464 53092 chr20 61296367 61296367 1 + C A rs148710404 61296363 + 61296343 61296383 41 CACCGAGGCCACTCTCATCACCGGCATGTCCACGTTCAGCC CACCGAGGCCACTCTCATCACCGGAATGTCCACGTTCAGCC < 41bp 0.452762461378176 0.834125267794918 0.025272995 0.09222722 prediction 0.668250535589836 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61296363 chr20:61296367 synonymous SNV . 0 25 hm5C_associated_SNPs_99947 0 0 1 0 2 Endoplasmic reticulum 0.500217078565256 0.500167679981454 0 0 hm5C_site_53092 DeepMRMD:0;iRNA_m5C:0 53093 chr12 6426535 6426535 1 + C A COAD 6426531 + 6426511 6426551 41 GTGAAGCAGACCATGGCTTACGCCCGAGAACAGCAAGAAAC GTGAAGCAGACCATGGCTTACGCCAGAGAACAGCAAGAAAC < 41bp 0.433785384953461 0.834116935074086 0.05391437 0.13727236 prediction 0.668233870148172 Functional Gain - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6426531 chr12:6426535 synonymous SNV . 0 25 hm5C_associated_SNPs_99948 0 0 0 0 2 Nucleus 0.500231643921077 0.500231643921092 0 3.08642000845794e-14 hm5C_site_53093 DeepMRMD:0;iRNA_m5C:3.08642000845794e-14 53094 chr1 248343450 248343450 1 + C A COAD 248343446 + 248343426 248343466 41 CTCCTCATCTACCTGGACACCCAGCTCCACACCCCCATGTA CTCCTCATCTACCTGGACACCCAGATCCACACCCCCATGTA < 41bp 0.50676259791095 0.840877568439218 0.030685633 0.26676297 prediction 0.668229941056535 Functional Gain - OR2M2 ENSG00000198601 CDS Human protein_coding chr1:248343446 chr1:248343450 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_99949 0 0 0 0 0 exosome 0.50023164392088 0.500231644205664 0 5.69568392450037e-10 hm5C_site_53094 DeepMRMD:0;iRNA_m5C:5.69568392450037e-10 53095 chr8 23429144 23429144 1 + C A LUAD 23429140 + 23429120 23429160 41 GTCTGTAAGACCCTTCTGAACACTCAGGAGAACGTGGCCCT GTCTGTAAGACCCTTCTGAACACTAAGGAGAACGTGGCCCT < 41bp 0.467953944036596 0.834112076987435 0.022267759 0.17083001 prediction 0.66822415397487 Functional Gain - SLC25A37 ENSG00000147454 CDS Human protein_coding chr8:23429140 chr8:23429144 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_99950 0 0 1 0 0 Ribosome 0.500231619520995 0.500231643921822 0 4.88016533850555e-08 hm5C_site_53095 DeepMRMD:0;iRNA_m5C:4.88016533850555e-08 53096 chr1 18149557 18149557 1 + C A LUSC 18149553 + 18149533 18149573 41 CGGGTCTGGCTTTTTGAAGGCTGGCACGGCCGGCTGGAATG CGGGTCTGGCTTTTTGAAGGCTGGAACGGCCGGCTGGAATG < 41bp 0.466751550621214 0.834079399778179 0.13583362 0.28867662 prediction 0.668158799556358 Functional Gain - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18149553 chr1:18149557 synonymous SNV . 0 25 hm5C_associated_SNPs_99951 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_53096 DeepMRMD:0;iRNA_m5C:0 53097 chr19 7680162 7680162 1 + C A UCEC 7680158 + 7680138 7680178 41 GCAGAGGAGGCGCGGCGGCGCAAGCAGTGGCAGGAGGTGGA GCAGAGGAGGCGCGGCGGCGCAAGAAGTGGCAGGAGGTGGA < 41bp 0.527723533673488 0.861799749530182 0.66265506 0.75788575 prediction 0.668152431713388 Functional Gain - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7680158 chr19:7680162 nonsynonymous SNV 0.160 2 25 hm5C_associated_SNPs_99952 0 0 1 0 2 nucleus 0.500231643921092 0.500231643921093 0.19046138 2.22044604925031e-16 hm5C_site_53097 DeepMRMD:0.19046138;iRNA_m5C:2.22044604925031e-16 53098 chr20 31672780 31672780 1 + C A LUAD 31672776 + 31672756 31672796 41 GGTGTCTACCTGAGCTTGTACACCCGTGTGGCCATCAACGG GGTGTCTACCTGAGCTTGTACACCAGTGTGGCCATCAACGG < 41bp 0.549999346426461 0.88406339496462 0.06629977 0.13261405 prediction 0.668128097076318 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31672776 chr20:31672780 nonsynonymous SNV 0.866 0 25 hm5C_associated_SNPs_99953 0 0 0 0 2 exosome 0.50023164393191 0.500231643926495 0 0 hm5C_site_53098 DeepMRMD:0;iRNA_m5C:0 53099 chr4 38910299 38910299 1 + C A CESC 38910295 + 38910275 38910315 41 TGTCCTTGCAGAAAGTGACCCGGGCTTTAAGCGGACCAAGA TGTCCTTGCAGAAAGTGACCCGGGATTTAAGCGGACCAAGA < 41bp 0.460644844876542 0.834047284269441 0.8895869 0.8908387 prediction 0.668094568538882 Functional Gain - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38910295 chr4:38910299 synonymous SNV . 0 25 hm5C_associated_SNPs_99954 0 0 0 0 1 Cytosol 0.50023164392131 0.500231643921102 0.00250360000000005 0 hm5C_site_53099 DeepMRMD:0.00250360000000005;iRNA_m5C:0 53100 chrX 37026802 37026802 1 + C A LUSC 37026798 + 37026778 37026818 41 AAGAAAGCGGCCCTGTTTTCCAAGCTCTCGCCAGCACAGCC AAGAAAGCGGCCCTGTTTTCCAAGATCTCGCCAGCACAGCC < 41bp 0.495513386461922 0.834046451340548 0.33042705 0.19458556 prediction 0.668092902681095 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37026798 chrX:37026802 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_99955 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 4.44089209850063e-16 hm5C_site_53100 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 53101 chr9 136402577 136402577 1 + C A SKCM 136402573 + 136402553 136402593 41 GGAGGGGGGCACCGACGCCACGGCCTTCTGGTGGGGGGAGT GGAGGGGGGCACCGACGCCACGGCATTCTGGTGGGGGGAGT < 41bp 0.545335601323771 0.879368515190524 0.15053913 0.14366677 prediction 0.668065827733506 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136402573 chr9:136402577 synonymous SNV . 0 25 hm5C_associated_SNPs_99956 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53101 DeepMRMD:0;iRNA_m5C:0 53102 chr6 26505209 26505209 1 + C A UCEC 26505205 + 26505185 26505225 41 GTTCAAGAGAATGGAGAAATCTGTCTGGAGTGCACCTCAGT GTTCAAGAGAATGGAGAAATCTGTATGGAGTGCACCTCAGT < 41bp 0.459183191965561 0.83403167372386 0.2556857 0.4091217 prediction 0.66806334744772 Functional Gain - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26505205 chr6:26505209 nonsynonymous SNV 0.487 4 25 hm5C_associated_SNPs_99957 0 0 0 0 1 nucleoplasm 0.500231510784906 0.500231647235113 0 2.7290041471062e-07 hm5C_site_53102 DeepMRMD:0;iRNA_m5C:2.7290041471062e-07 53103 chr8 55533897 55533897 1 + C A BLCA 55533893 + 55533873 55533913 41 ACCTGGACAAAGCCCGTCGGCGCCCGCGGCCCTGGCTCAGC ACCTGGACAAAGCCCGTCGGCGCCAGCGGCCCTGGCTCAGC < 41bp 0.53367799389944 0.867708829028536 0.27071124 0.52239907 prediction 0.668061670258192 Functional Gain - RP1 ENSG00000104237 CDS Human protein_coding chr8:55533893 chr8:55533897 nonsynonymous SNV 0.145 3 25 hm5C_associated_SNPs_99958 0 0 0 0 0 exosome 0.500231643921093 0.500231643921221 0.0447981399999999 2.56239474083486e-13 hm5C_site_53103 DeepMRMD:0.0447981399999999;iRNA_m5C:2.56239474083486e-13 53104 chrX 101382465 101382465 1 + T G ESCA 101382462 + 101382442 101382482 41 TGCAGGGCCCCACGAAGGGACACTGAAGACATTCCTTATGT TGCAGGGCCCCACGAAGGGACACGGAAGACATTCCTTATGT < 41bp 0.478134550189101 0.834014451599299 0.18225104 0.34341395 prediction 0.668028903198598 Functional Gain - TCEAL2 ENSG00000184905 CDS Human protein_coding chrX:101382462 chrX:101382465 synonymous SNV . 0 24 hm5C_associated_SNPs_99959 0 0 1 0 0 exosome 0.500231643921088 0.500231643921092 0 9.32587340685131e-15 hm5C_site_53104 DeepMRMD:0;iRNA_m5C:9.32587340685131e-15 53105 chr2 32445354 32445354 1 + C A UCEC 32445350 + 32445330 32445370 41 GTTCTTGCTCATGTGACCAACAGGCTGTACACTCTAGTGTC GTTCTTGCTCATGTGACCAACAGGATGTACACTCTAGTGTC < 41bp 0.515011184548874 0.849021516067969 0.17003804 0.3601601 prediction 0.668020663038192 Functional Gain - SLC30A6 ENSG00000152683 CDS Human protein_coding chr2:32445350 chr2:32445354 nonsynonymous SNV 0.943 4 25 hm5C_associated_SNPs_99960 0 0 1 0 1 Ribosome 0.500231644378107 0.500231643919061 0 0 hm5C_site_53105 DeepMRMD:0;iRNA_m5C:0 53106 chr19 36207093 36207093 1 + C A rs570044531 36207089 + 36207069 36207109 41 GGCAGGCTGCCCACCTCGCCCGCACCCTCCCCCGGCCCCTC GGCAGGCTGCCCACCTCGCCCGCAACCTCCCCCGGCCCCTC < 41bp 0.465498568523228 0.833995678592761 0.093909234 0.17491972 prediction 0.667991357185523 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207089 chr19:36207093 nonsynonymous SNV 0.075 0 25 hm5C_associated_SNPs_99961 0 0 0 0 1 nucleus 0.500231643905729 0.500231643919286 0 2.71147548858153e-11 hm5C_site_53106 DeepMRMD:0;iRNA_m5C:2.71147548858153e-11 53107 chr17 40765685 40765685 1 + C A COAD 40765681 + 40765661 40765701 41 CCAGGTGGTGCTGGACAACACAGCCCTGAACCGGATTGCCA CCAGGTGGTGCTGGACAACACAGCACTGAACCGGATTGCCA < 41bp 0.450550900283707 0.83398571393479 0.14017758 0.39370164 prediction 0.66797142786958 Functional Gain - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765681 chr17:40765685 synonymous SNV . 0 25 hm5C_associated_SNPs_99962 0 0 0 0 2 Ribosome 0.500231651041523 0.500231643807216 0 0 hm5C_site_53107 DeepMRMD:0;iRNA_m5C:0 53108 chr16 89784362 89784362 1 + T G rs2377050 89784359 + 89784339 89784379 41 GACCTCTGTGCTCCCACGTCCAGTGGCTCCCCCGACCTCTG GACCTCTGTGCTCCCACGTCCAGGGGCTCCCCCGACCTCTG < 41bp 0.490531854321452 0.833964928159288 0.17294344 0.9178379 prediction 0.667929856318576 Functional Gain - VPS9D1-AS1 ENSG00000261373 ncRNA_exonic Human antisense chr16:89784359 chr16:89784362 . . 0 24 hm5C_associated_SNPs_99963 0 0 0 0 0 unknown 0.500231643917035 0.500231691896438 0.8356758 9.59588053461857e-08 hm5C_site_53108 DeepMRMD:0.8356758;iRNA_m5C:9.59588053461857e-08 53109 chr2 14774292 14774292 1 + C A LUAD 14774288 + 14774268 14774308 41 GAAGGCCCCCCCGGGTTGCACCCCCTGCCCGGAGAGCCCCA GAAGGCCCCCCCGGGTTGCACCCCATGCCCGGAGAGCCCCA < 41bp 0.46276852516355 0.833958535403286 0.055906147 0.053550303 prediction 0.667917070806572 Functional Gain - FAM84A ENSG00000162981 CDS Human protein_coding chr2:14774288 chr2:14774292 synonymous SNV . 0 25 hm5C_associated_SNPs_99964 0 0 0 0 0 Ribosome 0.500231643920155 0.500231757943244 0 2.28046179717722e-07 hm5C_site_53109 DeepMRMD:0;iRNA_m5C:2.28046179717722e-07 53110 chr4 110788944 110788944 1 + C A GBM 110788940 + 110788920 110788960 41 TCACAGGAATTTTGTTTCAGCGGGCTGAATTGGAGCATTGT TCACAGGAATTTTGTTTCAGCGGGATGAATTGGAGCATTGT < 41bp 0.529706860799711 0.863645875279093 0.87826455 0.88897264 prediction 0.667878028958765 Functional Gain - LRIT3 ENSG00000183423 CDS Human protein_coding chr4:110788940 chr4:110788944 nonsynonymous SNV 0.942 4 25 hm5C_associated_SNPs_99965 0 0 0 0 0 Nucleus 0.500231645356129 0.500231643921301 0.0214161799999999 0 hm5C_site_53110 DeepMRMD:0.0214161799999999;iRNA_m5C:0 53111 chr1 176668278 176668278 1 + C A LUAD 176668274 + 176668254 176668294 41 AGCCCTGCGAGCCAAGCTTACAGGCCTGGAGCCCTGAGGTC AGCCCTGCGAGCCAAGCTTACAGGACTGGAGCCCTGAGGTC < 41bp 0.495602818428084 0.833877177298457 0.8365079 0.8402385 prediction 0.667754354596914 Functional Gain - PAPPA2 ENSG00000116183 CDS Human protein_coding chr1:176668274 chr1:176668278 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_99966 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.00746120000000006 0 hm5C_site_53111 DeepMRMD:0.00746120000000006;iRNA_m5C:0 53112 chr11 5011017 5011017 1 + C A LUSC 5011013 + 5010993 5011033 41 AGATGCATGCTCTGCTACACCAGCCCCACTGTGGGGTGCCT AGATGCATGCTCTGCTACACCAGCACCACTGTGGGGTGCCT < 41bp 0.547731972068252 0.881534190390101 0.092954665 0.20039418 prediction 0.667604436643698 Functional Gain - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5011013 chr11:5011017 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_99967 0 0 0 0 1 exosome 0.500218977959189 0.500231643904934 0 2.53318914897882e-05 hm5C_site_53112 DeepMRMD:0;iRNA_m5C:2.53318914897882e-05 53113 chr19 55085805 55085805 1 + C A KIRC 55085801 + 55085781 55085821 41 GCCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCATCCAGG GCCCACCCTCTGGGCTGAGCCAGGATCTGTGATCATCCAGG < 41bp 0.524258754703052 0.858028714292814 0.29360622 0.47482112 prediction 0.667539919179524 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55085801 chr19:55085805 synonymous SNV . 0 25 hm5C_associated_SNPs_99968 0 0 0 0 1 Cytosol 0.500231643921086 0.500231643921234 0 2.96651592179842e-13 hm5C_site_53113 DeepMRMD:0;iRNA_m5C:2.96651592179842e-13 53114 chr5 121786541 121786541 1 + C A PRAD 121786537 + 121786517 121786557 41 AAGAGGGAACTGAAGTTAGCCAGGCTGAGACAGCTGATGCA AAGAGGGAACTGAAGTTAGCCAGGATGAGACAGCTGATGCA < 41bp 0.488402555640386 0.833755464415076 0.5070382 0.5332552 prediction 0.667510928830152 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786537 chr5:121786541 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_99969 0 0 0 1 0 exosome 0.500231650071759 0.500231644643263 0.0524340000000001 0 hm5C_site_53114 DeepMRMD:0.0524340000000001;iRNA_m5C:0 53115 chr2 228110691 228110691 1 + C A rs115324397 228110687 + 228110667 228110707 41 CAGGGCACCCCAGGCAATACCGGGCCTTACGGACTTGTCGG CAGGGCACCCCAGGCAATACCGGGACTTACGGACTTGTCGG < 41bp 0.480185133906924 0.833754239970491 0.91859317 0.93261707 prediction 0.667508479940981 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228110687 chr2:228110691 nonsynonymous SNV 0.009 4 25 hm5C_associated_SNPs_99970 1 0 0 0 2 nucleus 0.500239250863004 0.500231645097405 0.0280478000000002 0 hm5C_site_53115 DeepMRMD:0.0280478000000002;iRNA_m5C:0 not specified not specified 53116 chr20 45702893 45702893 1 + C A KIRC 45702889 + 45702869 45702909 41 TACGTCCCGGCCAGCAGCATCTGCCCTTCGCCCCTCTCCAC TACGTCCCGGCCAGCAGCATCTGCACTTCGCCCCTCTCCAC < 41bp 0.44524100871676 0.833697228569574 0.038773656 0.05843991 prediction 0.667394457139148 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45702889 chr20:45702893 nonsynonymous SNV 0.961 1 25 hm5C_associated_SNPs_99971 0 0 0 0 2 Endoplasmic reticulum 0.500231643924266 0.500231643921087 0 0 hm5C_site_53116 DeepMRMD:0;iRNA_m5C:0 53117 chr17 9503497 9503497 1 + T G UCEC 9503494 + 9503474 9503514 41 GGGCCTGCGAAGGACAAATTCAGTTTGGTGAGTAGAGACCA GGGCCTGCGAAGGACAAATTCAGGTTGGTGAGTAGAGACCA < 41bp 0.523138905128092 0.8568266433003 0.23703173 0.8220494 prediction 0.667375476344416 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9503494 chr17:9503497 nonsynonymous SNV 0.980 3 24 hm5C_associated_SNPs_99972 0 0 0 0 1 nucleus 0.500231529492977 0.500231629778139 0.6440988 2.00570323904969e-07 hm5C_site_53117 DeepMRMD:0.6440988;iRNA_m5C:2.00570323904969e-07 53118 chr21 47406590 47406590 1 + C A rs61751027 47406586 + 47406566 47406606 41 AGTCTTCTCGGTGGCCATCACACCCGACCACCTGGTAGGCA AGTCTTCTCGGTGGCCATCACACCAGACCACCTGGTAGGCA < 41bp 0.444882924537978 0.833676714886424 0.4227972 0.72956157 prediction 0.667353429772848 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47406586 chr21:47406590 synonymous SNV . 0 25 hm5C_associated_SNPs_99973 0 0 0 0 1 exosome 0.500231643921809 0.50022277378018 0.45912314 0 hm5C_site_53118 DeepMRMD:0.45912314;iRNA_m5C:0 53119 chr17 27225646 27225646 1 + C A UCEC 27225642 + 27225622 27225662 41 TCTTCATCGGGTTCAGCATCCTCCCCAGGCCCAAGCCCTGC TCTTCATCGGGTTCAGCATCCTCCACAGGCCCAAGCCCTGC < 41bp 0.472899653550647 0.833668410860357 0.054802895 0.9557568 prediction 0.667336821720713 Functional Gain - DHRS13 ENSG00000167536 CDS Human protein_coding chr17:27225642 chr17:27225646 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99974 0 0 0 0 0 Ribosome 0.500231654485555 0.500232029874376 0.9115136 7.50777642055667e-07 hm5C_site_53119 DeepMRMD:0.9115136;iRNA_m5C:7.50777642055667e-07 53120 chr11 61897570 61897570 1 + C A UCEC 61897566 + 61897546 61897586 41 GTCACCCAGCTCATGTCCACCGAGCCTCTGCCCCGCACTCT GTCACCCAGCTCATGTCCACCGAGACTCTGCCCCGCACTCT < 41bp 0.475355051146285 0.833641539847876 0.26905406 0.4110363 prediction 0.667283079695752 Functional Gain - INCENP ENSG00000149503 CDS Human protein_coding chr11:61897566 chr11:61897570 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_99975 0 0 1 0 0 chromatin 0.500231532669567 0.500234430986183 0 5.79663323274637e-06 hm5C_site_53120 DeepMRMD:0;iRNA_m5C:5.79663323274637e-06 53121 chr9 133914549 133914549 1 + C A LUSC 133914545 + 133914525 133914565 41 ACACCTCCAGTGCGATGACACAGGCACCTGCGCCTGCAAGC ACACCTCCAGTGCGATGACACAGGAACCTGCGCCTGCAAGC < 41bp 0.47622887689168 0.833625157946981 0.80104333 0.8873086 prediction 0.667250315893962 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133914545 chr9:133914549 synonymous SNV . 0 25 hm5C_associated_SNPs_99976 0 0 0 0 2 chromatin 0.500263379918441 0.500232009794536 0.17253054 0 hm5C_site_53121 DeepMRMD:0.17253054;iRNA_m5C:0 53122 chr2 203242237 203242237 1 + C A GBM 203242233 + 203242213 203242253 41 CAGCGGCCCTGGCGGGTGCCCTGGCTACCATGGACCATCCT CAGCGGCCCTGGCGGGTGCCCTGGATACCATGGACCATCCT < 41bp 0.488524958186347 0.833618095064332 0.68893033 0.75324214 prediction 0.667236190128664 Functional Gain - BMPR2 ENSG00000204217 CDS Human protein_coding chr2:203242233 chr2:203242237 nonsynonymous SNV 0.864 1 25 hm5C_associated_SNPs_99977 0 0 1 0 1 Ribosome 0.500231623257854 0.500231643889221 0.12862362 4.12627338963745e-08 hm5C_site_53122 DeepMRMD:0.12862362;iRNA_m5C:4.12627338963745e-08 53123 chr1 153005016 153005016 1 + C A LUAD 153005012 + 153004992 153005032 41 CCAGCCCAAGGTTCCAGAGCCATGCCACCCCAAGGTGCCTG CCAGCCCAAGGTTCCAGAGCCATGACACCCCAAGGTGCCTG < 41bp 0.477723276233888 0.833591713423059 0.09314227 0.21907806 prediction 0.667183426846119 Functional Gain - SPRR1B ENSG00000169469 CDS Human protein_coding chr1:153005012 chr1:153005016 stopgain 0.964 0 25 hm5C_associated_SNPs_99978 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53123 DeepMRMD:0;iRNA_m5C:0 53124 chr10 72496543 72496543 1 + C A HNSC 72496539 + 72496519 72496559 41 GCTGGATGGGACTGAGTGTGCACCCGGCAAGGTACCTGTGG GCTGGATGGGACTGAGTGTGCACCAGGCAAGGTACCTGTGG < 41bp 0.452454662660895 0.833578938038631 0.19508469 0.16580102 prediction 0.667157876077263 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72496539 chr10:72496543 synonymous SNV . 0 25 hm5C_associated_SNPs_99979 0 0 1 0 1 chromatin 0.500231643921093 0.500231631241927 0 0 hm5C_site_53124 DeepMRMD:0;iRNA_m5C:0 53125 chr22 23632636 23632636 1 + C A rs5759683 23632632 + 23632612 23632652 41 TTTGGGGAGGAGGGTTGCAGCGGCCGAGCCAGGGTCTCCAC TTTGGGGAGGAGGGTTGCAGCGGCAGAGCCAGGGTCTCCAC < 41bp 0.481966177569134 0.833572477389369 0.89464843 0.90522563 prediction 0.667144954778738 Functional Gain - BCR ENSG00000186716 intronic Human protein_coding chr22:23632632 chr22:23632636 . . 0 25 hm5C_associated_SNPs_99980 0 0 1 0 0 Ribosome 0.500231643921124 0.500231643920951 0.0211543999999999 0 hm5C_site_53125 DeepMRMD:0.0211543999999999;iRNA_m5C:0 53126 chr5 42719182 42719182 1 + C A LAML 42719178 + 42719158 42719198 41 CACCCGGAAATGGTCTCACTCTGCCAAGAAAACTTCCTTAT CACCCGGAAATGGTCTCACTCTGCAAAGAAAACTTCCTTAT < 41bp 0.471218422969706 0.833542023972834 0.052612394 0.09813014 prediction 0.667084047945668 Functional Gain - GHR ENSG00000112964 CDS Human protein_coding chr5:42719178 chr5:42719182 nonsynonymous SNV 0.886 1 25 hm5C_associated_SNPs_99981 0 0 1 0 0 Nucleus 0.500231643904051 0.500231643920554 0 3.30069305221059e-11 hm5C_site_53126 DeepMRMD:0;iRNA_m5C:3.30069305221059e-11 53127 chr2 223917596 223917596 1 + C A LUAD 223917592 + 223917572 223917612 41 CAGCACGCACCCCGGCACCGCCGCCTCCAGCAGCCCCCTGG CAGCACGCACCCCGGCACCGCCGCATCCAGCAGCCCCCTGG < 41bp 0.479814610248819 0.83353886882569 0.08269963 0.08076817 prediction 0.66707773765138 Functional Gain - KCNE4 ENSG00000152049 CDS Human protein_coding chr2:223917592 chr2:223917596 synonymous SNV . 0 25 hm5C_associated_SNPs_99982 0 0 0 0 1 Nucleus 0.500231646262349 0.50022937617461 0 0 hm5C_site_53127 DeepMRMD:0;iRNA_m5C:0 53128 chr1 46812740 46812740 1 + C A UCEC 46812736 + 46812716 46812756 41 GACACTAGCGTTGCTTCAGACTGGCTGTTGCCGTAAGTCAG GACACTAGCGTTGCTTCAGACTGGATGTTGCCGTAAGTCAG < 41bp 0.474742187494182 0.833481512493161 0.27939236 0.30346906 prediction 0.666963024986323 Functional Gain - NSUN4 ENSG00000117481 CDS Human protein_coding chr1:46812736 chr1:46812740 synonymous SNV . 0 25 hm5C_associated_SNPs_99983 0 0 1 0 1 Cytosol 0.500231439237179 0.500231629940714 0 3.81407069927064e-07 hm5C_site_53128 DeepMRMD:0;iRNA_m5C:3.81407069927064e-07 53129 chr10 99211577 99211577 1 + C A UCEC 99211573 + 99211553 99211593 41 TACGGCAAGGTCTGCCTGCGCTCCCTGCTCTACAACTCCTT TACGGCAAGGTCTGCCTGCGCTCCATGCTCTACAACTCCTT < 41bp 0.558876399761831 0.892321843318519 0.066299886 0.47411397 prediction 0.666890887113375 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211573 chr10:99211577 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_99984 0 0 1 0 1 Cytosol 0.500231643920672 0.500231643921096 0 8.4954265844317e-13 hm5C_site_53129 DeepMRMD:0;iRNA_m5C:8.4954265844317e-13 53130 chr9 35658621 35658621 1 + C A CESC 35658617 + 35658597 35658637 41 GAGCCACGGAACCCCGGCGGCGACCACCGCTCAAGGATCAA GAGCCACGGAACCCCGGCGGCGACAACCGCTCAAGGATCAA < 41bp 0.462995651824834 0.833418251669706 0.4677482 0.38573363 prediction 0.666836503339411 Functional Gain - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35658617 chr9:35658621 nonsynonymous SNV 0.097 1 25 hm5C_associated_SNPs_99985 0 0 0 0 1 Endoplasmic reticulum 0.50023164813888 0.500231631379283 0 0 hm5C_site_53130 DeepMRMD:0;iRNA_m5C:0 53131 chr11 7064553 7064553 1 + C A rs16921740 7064549 + 7064529 7064569 41 GAGAAGACTGTGCCAAGTCGCTGCCAAAGGAATATGGACTA GAGAAGACTGTGCCAAGTCGCTGCAAAAGGAATATGGACTA < 41bp 0.440034346051445 0.833380645757592 0.1728819 0.1912792 prediction 0.666761291515184 Functional Gain - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7064549 chr11:7064553 synonymous SNV . 0 25 hm5C_associated_SNPs_99986 0 0 0 0 0 cytosol 0.500231643921097 0.500231645211719 0 2.58124321916853e-09 hm5C_site_53131 DeepMRMD:0;iRNA_m5C:2.58124321916853e-09 53132 chr10 106121816 106121816 1 + C A UCEC 106121812 + 106121792 106121832 41 GGCCTGGAAGATGGTGGACTCAGCCTATGACAAAGAGCAGA GGCCTGGAAGATGGTGGACTCAGCATATGACAAAGAGCAGA < 41bp 0.454753689541108 0.83336710101427 0.12354696 0.32572457 prediction 0.66673420202854 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106121812 chr10:106121816 synonymous SNV . 0 25 hm5C_associated_SNPs_99987 0 0 0 0 1 nucleolus 0.500231643921092 0.500231643921092 0 0 hm5C_site_53132 DeepMRMD:0;iRNA_m5C:0 53133 chr3 47455570 47455570 1 + C A UCEC 47455566 + 47455546 47455586 41 AGGTTGTCTGAGATGACACCCAAGCTTGCACCACAGCCCAG AGGTTGTCTGAGATGACACCCAAGATTGCACCACAGCCCAG < 41bp 0.514991069415273 0.848337923807281 0.8659323 0.8887399 prediction 0.666693708784015 Functional Gain - SCAP ENSG00000114650 CDS Human protein_coding chr3:47455566 chr3:47455570 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_99988 0 0 1 0 0 Cytosol 0.500229921005189 0.500230896682184 0.0456152000000001 1.95135398972646e-06 hm5C_site_53133 DeepMRMD:0.0456152000000001;iRNA_m5C:1.95135398972646e-06 53134 chr3 183823571 183823571 1 + C A OV 183823567 + 183823547 183823587 41 CACCAGGTGGCCATCAGGCGCAGGCCCAGTCTCTATGTCAT CACCAGGTGGCCATCAGGCGCAGGACCAGTCTCTATGTCAT < 41bp 0.531703468316067 0.864987680608835 0.23057297 0.39158085 prediction 0.666568424585537 Functional Gain - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823567 chr3:183823571 nonsynonymous SNV 0.953 4 25 hm5C_associated_SNPs_99989 0 0 0 0 1 unknown 0.50023157073026 0.500231643921076 0 1.46381630372616e-07 hm5C_site_53134 DeepMRMD:0;iRNA_m5C:1.46381630372616e-07 53135 chr12 119592130 119592130 1 + C A PRAD 119592126 + 119592106 119592146 41 CGTCGGAGACGTCGGTCCTACTCGCCTATGAGAAAGCGCCG CGTCGGAGACGTCGGTCCTACTCGACTATGAGAAAGCGCCG < 41bp 0.445627121356165 0.833252181298826 0.16475639 0.37657362 prediction 0.666504362597652 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119592126 chr12:119592130 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_99990 0 0 1 0 2 Endoplasmic reticulum 0.500231671265907 0.500233065223431 0 2.78791504815246e-06 hm5C_site_53135 DeepMRMD:0;iRNA_m5C:2.78791504815246e-06 53136 chr16 57449713 57449713 1 + C A SKCM 57449709 + 57449689 57449729 41 GCAGGGCAGGGCCATCTGTTCGGACCCCAACAACAAGAGAG GCAGGGCAGGGCCATCTGTTCGGAACCCAACAACAAGAGAG < 41bp 0.478751950497376 0.833213739681839 0.29726154 0.39300942 prediction 0.666427479363678 Functional Gain - CCL17 ENSG00000102970 CDS Human protein_coding chr16:57449709 chr16:57449713 nonsynonymous SNV 0.022 2 25 hm5C_associated_SNPs_99991 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_53136 DeepMRMD:0;iRNA_m5C:0 53137 chr10 81373603 81373603 1 + C A LUAD 81373599 + 81373579 81373619 41 GAGGCATGTGCCAGAGCAGGCGGCCGCATTGCTGTCCCAAG GAGGCATGTGCCAGAGCAGGCGGCAGCATTGCTGTCCCAAG < 41bp 0.517726016846881 0.850922904235006 0.7902826 0.85132384 prediction 0.666393774776251 Functional Gain - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81373599 chr10:81373603 nonsynonymous SNV 0.057 0 25 hm5C_associated_SNPs_99992 0 0 0 0 0 unknown 0.500231645660844 0.500231643920589 0.12208248 0 hm5C_site_53137 DeepMRMD:0.12208248;iRNA_m5C:0 53138 chr11 125659320 125659320 1 + C A LIHC 125659316 + 125659296 125659336 41 AGTGCATAACATGCCACCTTCGCACACGGACAGACCGCTGT AGTGCATAACATGCCACCTTCGCAAACGGACAGACCGCTGT < 41bp 0.444469016945803 0.833178200910683 0.03824386 0.054451793 prediction 0.666356401821367 Functional Gain - PATE3 ENSG00000236027 CDS Human protein_coding chr11:125659316 chr11:125659320 nonsynonymous SNV 0.051 0 25 hm5C_associated_SNPs_99993 0 0 0 0 1 unknown 0.500231579522079 0.5002316539692 0 1.48894242490982e-07 hm5C_site_53138 DeepMRMD:0;iRNA_m5C:1.48894242490982e-07 53139 chr19 48908239 48908239 1 + T G STAD 48908236 + 48908216 48908256 41 GTGCTCAGTGCCCAGCTCCGCAGTGTCAGCGCGCAGATCCG GTGCTCAGTGCCCAGCTCCGCAGGGTCAGCGCGCAGATCCG < 41bp 0.464612781506164 0.833156060963187 0.174072 0.9119164 prediction 0.666312121926374 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48908236 chr19:48908239 nonsynonymous SNV 0.978 0 24 hm5C_associated_SNPs_99994 0 0 0 0 0 chromatin 0.500231643930819 0.500231643921129 0.8238328 0 hm5C_site_53139 DeepMRMD:0.8238328;iRNA_m5C:0 53140 chr16 1129193 1129193 1 + C A rs4988487 1129189 + 1129169 1129209 41 GCCGCGTCCTTCTGGCCCTTCGGCCCCGTCCTGTGCCGCCT GCCGCGTCCTTCTGGCCCTTCGGCACCGTCCTGTGCCGCCT < 41bp 0.524985576067218 0.858135228406695 0.21434578 0.24776867 prediction 0.666299304678955 Functional Gain - SSTR5 ENSG00000162009 CDS Human protein_coding chr16:1129189 chr16:1129193 nonsynonymous SNV 0.298 0 25 hm5C_associated_SNPs_99995 0 0 0 0 0 exosome 0.500231643921073 0.500231643921092 0 3.86357612569554e-14 hm5C_site_53140 DeepMRMD:0;iRNA_m5C:3.86357612569554e-14 53141 chr2 131520863 131520863 1 + C A LUAD 131520859 + 131520839 131520879 41 CAAGAAGGAAGCTGAGAGCCCAGGCACTCCTGCCGCCACCT CAAGAAGGAAGCTGAGAGCCCAGGAACTCCTGCCGCCACCT < 41bp 0.535416391863267 0.868561742406459 0.9012746 0.9099372 prediction 0.666290701086384 Functional Gain - AMER3 ENSG00000178171 CDS Human protein_coding chr2:131520859 chr2:131520863 synonymous SNV . 0 25 hm5C_associated_SNPs_99996 0 0 0 0 0 Nucleus 0.500231643921154 0.500231643921092 0.0173251999999999 0 hm5C_site_53141 DeepMRMD:0.0173251999999999;iRNA_m5C:0 53142 chr19 8841553 8841553 1 + C A rs184106460 8841549 + 8841529 8841569 41 TTCTTGATCCGTGTGGACTCCCGGCTCCATACACCCATGTA TTCTTGATCCGTGTGGACTCCCGGATCCATACACCCATGTA < 41bp 0.493516471031004 0.833112113401959 0.17129716 0.44817063 prediction 0.666224226803918 Functional Gain - OR2Z1 ENSG00000181733 CDS Human protein_coding chr19:8841549 chr19:8841553 nonsynonymous SNV 0.214 4 25 hm5C_associated_SNPs_99997 0 0 0 0 0 unknown 0.500231643892381 0.500231643922152 0 5.9541704899857e-11 hm5C_site_53142 DeepMRMD:0;iRNA_m5C:5.9541704899857e-11 53143 chr4 52943093 52943093 1 + T G UCEC 52943090 + 52943070 52943110 41 ATGTGGCGCGCAAGGCTGCCCTCTTGTCCCGGTTCAGCGAT ATGTGGCGCGCAAGGCTGCCCTCGTGTCCCGGTTCAGCGAT < 41bp 0.525016751807942 0.858116570015262 0.008102536 0.031750113 prediction 0.666199636414641 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52943090 chr4:52943093 nonsynonymous SNV 0.337 2 24 hm5C_associated_SNPs_99998 0 0 1 0 0 cytosol 0.500513799893349 0.500231686407065 0 0 hm5C_site_53143 DeepMRMD:0;iRNA_m5C:0 53144 chr20 31671535 31671535 1 + C A UCEC 31671531 + 31671511 31671551 41 GGTTTGCTGGGCACTGGAGGCATGCTGGCAGCTGATGGCAT GGTTTGCTGGGCACTGGAGGCATGATGGCAGCTGATGGCAT < 41bp 0.470854885776944 0.833082646881405 0.7450791 0.83339095 prediction 0.666165293762809 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31671531 chr20:31671535 nonsynonymous SNV 0.966 4 25 hm5C_associated_SNPs_99999 0 0 0 0 0 exosome 0.500231639651408 0.500231616814307 0.1766237 0 hm5C_site_53144 DeepMRMD:0.1766237;iRNA_m5C:0 53145 chr7 100773845 100773845 1 + C A OV 100773841 + 100773821 100773861 41 GGCTTCATGCCCCACTTCTTCAGGCTGTTCCGGAGCACGGT GGCTTCATGCCCCACTTCTTCAGGATGTTCCGGAGCACGGT < 41bp 0.525302694567924 0.858357849960706 0.918661 0.9165516 prediction 0.666110310785565 Functional Gain - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100773841 chr7:100773845 nonsynonymous SNV 0.932 3 25 hm5C_associated_SNPs_100000 0 0 1 0 1 Ribosome 0.50023164391432 0.500231643925581 0 2.25228724559656e-11 hm5C_site_53145 DeepMRMD:0;iRNA_m5C:2.25228724559656e-11 53146 chr19 616323 616323 1 + C A rs574907436 616319 + 616299 616339 41 CCGGCCCCGCGGCCTCCACACGCCCGGCCAGCAGCTCCACA CCGGCCCCGCGGCCTCCACACGCCAGGCCAGCAGCTCCACA < 41bp 0.516999000480041 0.850042086088636 0.8183714 0.9280975 prediction 0.666086171217189 Functional Gain - HCN2 ENSG00000099822 CDS Human protein_coding chr19:616319 chr19:616323 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_100001 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.2194522 0 hm5C_site_53146 DeepMRMD:0.2194522;iRNA_m5C:0 53147 chr3 42242418 42242418 1 + C A rs41289572 42242414 + 42242394 42242434 41 CCCCGGCTCCAACCAGTCCTCGGCCATGAACTCCCTCCTGT CCCCGGCTCCAACCAGTCCTCGGCAATGAACTCCCTCCTGT < 41bp 0.460890310335483 0.833042860776098 0.07522118 0.18125579 prediction 0.666085721552197 Functional Gain - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42242414 chr3:42242418 synonymous SNV . 0 25 hm5C_associated_SNPs_100002 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643919598 0 0 hm5C_site_53147 DeepMRMD:0;iRNA_m5C:0 53148 chr5 140531234 140531234 1 + C A LUSC 140531230 + 140531210 140531250 41 GTCCGCGAGAACAACAGCCCCGCCCTGCACATCGGCAGCGT GTCCGCGAGAACAACAGCCCCGCCATGCACATCGGCAGCGT < 41bp 0.547181290659981 0.880218031622119 0.0338569 0.26566234 prediction 0.666073481924277 Functional Gain - PCDHB6 ENSG00000113211 CDS Human protein_coding chr5:140531230 chr5:140531234 nonsynonymous SNV 0.975 3 25 hm5C_associated_SNPs_100003 0 0 0 0 0 exosome 0.500231631161832 0.500231654887256 0 4.74508470293955e-08 hm5C_site_53148 DeepMRMD:0;iRNA_m5C:4.74508470293955e-08 53149 chr6 155450575 155450575 1 + C A UCEC 155450571 + 155450551 155450591 41 TTTCTCACTTTAAGAGTAACCAGCCTTACGCATCGAGACTC TTTCTCACTTTAAGAGTAACCAGCATTACGCATCGAGACTC < 41bp 0.475356163613711 0.833024503033505 0.40446734 0.38071454 prediction 0.666049006067011 Functional Gain - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155450571 chr6:155450575 nonsynonymous SNV 0.189 4 25 hm5C_associated_SNPs_100004 0 0 0 0 0 Cytosol 0.500231645106318 0.50022832857824 0 0 hm5C_site_53149 DeepMRMD:0;iRNA_m5C:0 53150 chr1 110086448 110086448 1 + C A LUAD 110086444 + 110086424 110086464 41 CAGCCGCTCCACGATGGTCACCAGCTCGGGGGCCCCCCAGA CAGCCGCTCCACGATGGTCACCAGATCGGGGGCCCCCCAGA < 41bp 0.469413149796602 0.833023109144972 0.26521635 0.83774567 prediction 0.666046218289944 Functional Gain - GPR61 ENSG00000156097 CDS Human protein_coding chr1:110086444 chr1:110086448 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_100005 0 0 0 0 0 exosome 0.500238218375463 0.500355326119867 0.67549134 0.000234215488808198 hm5C_site_53150 DeepMRMD:0.67549134;iRNA_m5C:0.000234215488808198 53151 chr2 85531073 85531073 1 + C A THCA 85531069 + 85531049 85531089 41 GTCACCGTATTACCCACTCTCTCCCGGAGCTGTCGGACAAA GTCACCGTATTACCCACTCTCTCCAGGAGCTGTCGGACAAA < 41bp 0.420967600530684 0.832978397845454 0.42963204 0.95631623 prediction 0.665956795690908 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85531069 chr2:85531073 synonymous SNV . 0 25 hm5C_associated_SNPs_100006 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921134 0.91263246 8.26005930321116e-14 hm5C_site_53151 DeepMRMD:0.91263246;iRNA_m5C:8.26005930321116e-14 53152 chr11 123901169 123901169 1 + C A LUSC 123901165 + 123901145 123901185 41 CGTTTTCTACACTGTGCTGACGCCCCTTCTCAACCCTGTTG CGTTTTCTACACTGTGCTGACGCCACTTCTCAACCCTGTTG < 41bp 0.476511795215211 0.832963676541242 0.014716536 0.023555398 prediction 0.665927353082483 Functional Gain - OR10G8 ENSG00000234560 CDS Human protein_coding chr11:123901165 chr11:123901169 synonymous SNV . 0 25 hm5C_associated_SNPs_100007 0 0 0 0 0 unknown 0.500231643920871 0.5002316372051 0 0 hm5C_site_53152 DeepMRMD:0;iRNA_m5C:0 53153 chr1 248525698 248525698 1 + C A LUSC 248525694 + 248525674 248525714 41 GGGCCGGAAAAAGGCCTTTGCCACCTGCTCCTCCCACCTGA GGGCCGGAAAAAGGCCTTTGCCACATGCTCCTCCCACCTGA < 41bp 0.479840109301915 0.832899455427828 0.09912333 0.3972101 prediction 0.665798910855655 Functional Gain - OR2T4 ENSG00000196944 CDS Human protein_coding chr1:248525694 chr1:248525698 synonymous SNV . 0 25 hm5C_associated_SNPs_100008 0 0 0 0 0 unknown 0.50023164392057 0.500231643921258 0 1.37556632751057e-12 hm5C_site_53153 DeepMRMD:0;iRNA_m5C:1.37556632751057e-12 53154 chr6 26468518 26468518 1 + C A UCEC 26468514 + 26468494 26468534 41 TGTCCTCCCCTGATAGGATTCTCCCTTTGAAGGAGTCCCTT TGTCCTCCCCTGATAGGATTCTCCATTTGAAGGAGTCCCTT < 41bp 0.450916276947203 0.83288077380027 0.61426246 0.9575033 prediction 0.66576154760054 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26468514 chr6:26468518 nonsynonymous SNV 0.007 2 25 hm5C_associated_SNPs_100009 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921758 0.68648168 1.33115740652556e-12 hm5C_site_53154 DeepMRMD:0.68648168;iRNA_m5C:1.33115740652556e-12 53155 chr2 85532460 85532460 1 + C A COAD 85532456 + 85532436 85532476 41 TGCCCACCTCAGGGATCCCCCACCCTGCCATCGTCTCCCCC TGCCCACCTCAGGGATCCCCCACCATGCCATCGTCTCCCCC < 41bp 0.443482912189087 0.832869194135217 0.3396793 0.31773633 prediction 0.665738388270434 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85532456 chr2:85532460 nonsynonymous SNV 0.965 4 25 hm5C_associated_SNPs_100010 0 0 0 0 2 Endoplasmic reticulum 0.500231642984987 0.500231643921096 0 1.8722188244169e-09 hm5C_site_53155 DeepMRMD:0;iRNA_m5C:1.8722188244169e-09 53156 chrX 36254883 36254883 1 + C A COAD 36254879 + 36254859 36254899 41 AGGGGTTGGGAAAAAACCTTCGGCCTTGGAACACATCACTG AGGGGTTGGGAAAAAACCTTCGGCATTGGAACACATCACTG < 41bp 0.492810413225749 0.832854752784078 0.51344997 0.41552204 prediction 0.665709505568155 Functional Gain - CFAP47 ENSG00000205081 CDS Human other chrX:36254879 chrX:36254883 synonymous SNV . 0 25 hm5C_associated_SNPs_100011 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_53156 DeepMRMD:0;iRNA_m5C:0 53157 chr12 27869255 27869255 1 + T G rs201903662 27869252 + 27869232 27869272 41 TCCTAGGACAGAGAAAATGGCTGTTGACCAGGACTGGCCTA TCCTAGGACAGAGAAAATGGCTGGTGACCAGGACTGGCCTA < 41bp 0.480054388949917 0.832806118875604 0.14534244 0.3111714 prediction 0.665612237751207 Functional Gain - MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27869252 chr12:27869255 nonsynonymous SNV 0.989 1 24 hm5C_associated_SNPs_100012 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921001 0 0 hm5C_site_53157 DeepMRMD:0;iRNA_m5C:0 53158 chr3 119306538 119306538 1 + C A BLCA 119306534 + 119306514 119306554 41 CCTGGAAGGAGCTTGCCCACCGAGCCTTTTTCCATGGTGGA CCTGGAAGGAGCTTGCCCACCGAGACTTTTTCCATGGTGGA < 41bp 0.529916123511445 0.862692805231621 0.15830645 0.3710758 prediction 0.66555336344035 Functional Gain - ADPRH ENSG00000144843 CDS Human protein_coding chr3:119306534 chr3:119306538 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_100013 0 0 0 0 0 exosome 0.500231643921134 0.500231643921118 0 0 hm5C_site_53158 DeepMRMD:0;iRNA_m5C:0 53159 chr20 23016750 23016750 1 + C A rs4988472 23016746 + 23016726 23016766 41 GCCACACCCGGCCTGGTCGGCAGTCTTCGTGGTCTACACTT GCCACACCCGGCCTGGTCGGCAGTATTCGTGGTCTACACTT < 41bp 0.496744943923647 0.832757905514883 0.28378236 0.36624348 prediction 0.665515811029767 Functional Gain - SSTR4 ENSG00000132671 CDS Human protein_coding chr20:23016746 chr20:23016750 synonymous SNV . 0 25 hm5C_associated_SNPs_100014 0 0 0 0 0 exosome 0.500231073747717 0.5002316439488 0 1.14040216581124e-06 hm5C_site_53159 DeepMRMD:0;iRNA_m5C:1.14040216581124e-06 53160 chr17 39411934 39411934 1 + C A STAD 39411930 + 39411910 39411950 41 TGGCCAAACCAGCTGTGGGTCCAGCTGTGGCCAGAGCAGCT TGGCCAAACCAGCTGTGGGTCCAGATGTGGCCAGAGCAGCT < 41bp 0.489484303500343 0.832744731905219 0.23077264 0.3958058 prediction 0.665489463810438 Functional Gain - KRTAP9-9 ENSG00000198083 CDS Human protein_coding chr17:39411930 chr17:39411934 nonsynonymous SNV 0.006 2 25 hm5C_associated_SNPs_100015 0 0 0 0 0 unknown 0.500231482674 0.500231610229638 0 2.55111275881958e-07 hm5C_site_53160 DeepMRMD:0;iRNA_m5C:2.55111275881958e-07 53161 chr4 184606530 184606530 1 + T G UCS 184606527 + 184606507 184606547 41 GGCTGGCAGCAATATTTTCACAATAGGAGTACAGGACTTTG GGCTGGCAGCAATATTTTCACAAGAGGAGTACAGGACTTTG < 41bp 0.511919772728099 0.844635909914272 0.16125241 0.7272385 prediction 0.665432274372345 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184606527 chr4:184606530 nonsynonymous SNV 0.985 2 24 hm5C_associated_SNPs_100016 0 0 1 0 1 Cytosol 0.500231643921093 0.500231643921092 0.454477 0 hm5C_site_53161 DeepMRMD:0.454477;iRNA_m5C:0 53162 chr2 176988015 176988015 1 + C A rs711821 176988011 + 176987991 176988031 41 AGCGGCCCCGGCCCCCGCCACGGCCGCCTCCACCACCTCCT AGCGGCCCCGGCCCCCGCCACGGCAGCCTCCACCACCTCCT < 41bp 0.463218502351105 0.83270761927572 0.42757213 0.70594347 prediction 0.66541523855144 Functional Gain - HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176988011 chr2:176988015 synonymous SNV . 0 25 hm5C_associated_SNPs_100017 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643919968 0.41188694 0 hm5C_site_53162 DeepMRMD:0.41188694;iRNA_m5C:0 53163 chrX 100646777 100646777 1 + T G CHOL 100646774 + 100646754 100646794 41 TATGACAGGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCC TATGACAGGAAGCAGAGTGGCTAGGGTGGGCAAACTAAGCC < 41bp 0.489417752024282 0.832672502944177 0.34273535 0.68723655 prediction 0.665345005888355 Functional Gain - RPL36A;RPL36A-HNRNPH2 ENSG00000241343;ENSG00000257529 CDS Human other chrX:100646774 chrX:100646777 stopgain 1.000 0 24 hm5C_associated_SNPs_100018 0 0 1 0 2 unknown 0.500231643921522 0.500231643927687 0.3744731 1.23308030453018e-11 hm5C_site_53163 DeepMRMD:0.3744731;iRNA_m5C:1.23308030453018e-11 53164 chr20 36024669 36024669 1 + C A STAD 36024665 + 36024645 36024685 41 AGCGGCGGCTTCTACATCACCTCCCGCACCCAGTTCAACAG AGCGGCGGCTTCTACATCACCTCCAGCACCCAGTTCAACAG < 41bp 0.413917943606846 0.832662224553087 0.02094984 0.76538587 prediction 0.665324449106174 Functional Gain - SRC ENSG00000197122 CDS Human protein_coding chr20:36024665 chr20:36024669 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100019 0 0 0 0 1 Ribosome 0.500231643919506 0.500231631648394 0.53077174 0 hm5C_site_53164 DeepMRMD:0.53077174;iRNA_m5C:0 53165 chr5 140559629 140559629 1 + C A COAD 140559625 + 140559605 140559645 41 GTGGACGGCTTCTCCCAGCCCTACCTGCCGCTTCCGGAGGC GTGGACGGCTTCTCCCAGCCCTACATGCCGCTTCCGGAGGC < 41bp 0.528414246509226 0.861075699474515 0.082823694 0.21274605 prediction 0.665322905930577 Functional Gain - PCDHB8 ENSG00000120322 CDS Human protein_coding chr5:140559625 chr5:140559629 nonsynonymous SNV 0.170 3 25 hm5C_associated_SNPs_100020 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53165 DeepMRMD:0;iRNA_m5C:0 53166 chr5 140736378 140736378 1 + T G SKCM 140736375 + 140736355 140736395 41 CTGCTGATGACAGCCAGTGACAGTGGAGACCCTCCACTCAG CTGCTGATGACAGCCAGTGACAGGGGAGACCCTCCACTCAG < 41bp 0.47119995467694 0.832658060548969 0.105398804 0.9283215 prediction 0.665316121097939 Functional Gain - PCDHGA4 ENSG00000262576 CDS Human protein_coding chr5:140736375 chr5:140736378 nonsynonymous SNV 0.829 0 24 hm5C_associated_SNPs_100021 0 0 0 0 0 exosome 0.500193040167547 0.500231679930079 0.856643 7.7279525064311e-05 hm5C_site_53166 DeepMRMD:0.856643;iRNA_m5C:7.7279525064311e-05 53167 chr3 68055839 68055839 1 + C A LUAD 68055835 + 68055815 68055855 41 AGTGCTTGTGCAATGCTACTCTGCCATGGATCCCTTCAGCA AGTGCTTGTGCAATGCTACTCTGCAATGGATCCCTTCAGCA < 41bp 0.527158979733844 0.859816650577508 0.018478215 0.11534962 prediction 0.665315341687329 Functional Gain - FAM19A1 ENSG00000183662 CDS Human protein_coding chr3:68055835 chr3:68055839 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_100022 0 0 0 0 2 exosome 0.500231702244592 0.500231643916988 0 0 hm5C_site_53167 DeepMRMD:0;iRNA_m5C:0 53168 chr5 79801834 79801834 1 + C A rs141387457 79801830 + 79801810 79801850 41 CATGATCCGCCTGCCTTGGCCTCGCGAAGTGCTGGGATTAC CATGATCCGCCTGCCTTGGCCTCGAGAAGTGCTGGGATTAC < 41bp 0.492092905402091 0.832611681742835 0.06902811 0.4459883 prediction 0.66522336348567 Functional Gain - FAM151B ENSG00000152380 UTR3 Human protein_coding chr5:79801830 chr5:79801834 . . 0 25 hm5C_associated_SNPs_100023 0 0 0 0 2 exosome 0.500231641186366 0.500231615892524 0 0 hm5C_site_53168 DeepMRMD:0;iRNA_m5C:0 53169 chr14 20665990 20665990 1 + C A LUSC 20665986 + 20665966 20666006 41 TTTGATCGATACCTTGCCATCTGTCGGCCTCTACGCTATCC TTTGATCGATACCTTGCCATCTGTAGGCCTCTACGCTATCC < 41bp 0.520997743324494 0.853589393934182 0.046494693 0.051353842 prediction 0.665183301219377 Functional Gain - OR11G2 ENSG00000196832 CDS Human protein_coding chr14:20665986 chr14:20665990 synonymous SNV . 0 25 hm5C_associated_SNPs_100024 0 0 0 0 0 unknown 0.500231643920881 0.500231643921092 0 4.2277292777726e-13 hm5C_site_53169 DeepMRMD:0;iRNA_m5C:4.2277292777726e-13 53170 chr12 122079531 122079531 1 + C A COAD 122079527 + 122079507 122079547 41 CAGAGGGGACCACCCCCTGACGCCCGGCAGCCACTATGCCT CAGAGGGGACCACCCCCTGACGCCAGGCAGCCACTATGCCT < 41bp 0.460303083424724 0.83259152285508 0.14399257 0.3727724 prediction 0.665183045710161 Functional Gain - ORAI1 ENSG00000182500 CDS Human other chr12:122079527 chr12:122079531 synonymous SNV . 0 25 hm5C_associated_SNPs_100025 0 0 0 0 0 Endoplasmic reticulum 0.500231643921094 0.500231643921092 0 0 hm5C_site_53170 DeepMRMD:0;iRNA_m5C:0 53171 chr21 46067099 46067099 1 + C A COAD 46067095 + 46067075 46067115 41 TCCTCCTCTGTGTCCCTCCTCTGCCACCCCGTGTGCAGGTC TCCTCCTCTGTGTCCCTCCTCTGCAACCCCGTGTGCAGGTC < 41bp 0.53184195797365 0.864423987005809 0.13227049 0.46583703 prediction 0.665164058064317 Functional Gain - KRTAP10-11 ENSG00000243489 CDS Human protein_coding chr21:46067095 chr21:46067099 nonsynonymous SNV 0.230 1 25 hm5C_associated_SNPs_100026 0 0 0 0 0 unknown 0.500231643921093 0.500231643924007 0 5.82733861165252e-12 hm5C_site_53171 DeepMRMD:0;iRNA_m5C:5.82733861165252e-12 53172 chr1 12835768 12835768 1 + C A THCA 12835764 + 12835744 12835784 41 TGGTCTGGAGCTTCTGCACTCTCCCCAGAGGCCCTGAGTAA TGGTCTGGAGCTTCTGCACTCTCCACAGAGGCCCTGAGTAA < 41bp 0.443692633731155 0.832559517955326 0.05299002 0.92815137 prediction 0.665119035910652 Functional Gain - PRAMEF12 ENSG00000116726 CDS Human protein_coding chr1:12835764 chr1:12835768 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_100027 0 0 0 0 1 unknown 0.50023164392166 0.500231652304336 0.85630274 1.67653515514843e-08 hm5C_site_53172 DeepMRMD:0.85630274;iRNA_m5C:1.67653515514843e-08 53173 chr17 4805302 4805302 1 + G T HNSC 4805306 - 4805286 4805326 41 GCTCCGTGACGTGGCTGCCTCCGGCCATCTACCGCAGCGTC GCTCCGTGACGTGGCTGCCTCCGGACATCTACCGCAGCGTC < 41bp 0.536144846409524 0.868701854337813 0.49593467 0.67278814 prediction 0.665114015856578 Functional Gain - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4805306 chr17:4805302 nonsynonymous SNV 0.955 4 25 hm5C_associated_SNPs_100028 0 0 0 0 2 exosome 0.500231644113449 0.500231644778356 0.34557628 1.32981337053195e-09 hm5C_site_53173 DeepMRMD:0.34557628;iRNA_m5C:1.32981337053195e-09 53174 chr14 95029990 95029990 1 + C A OV 95029986 + 95029966 95030006 41 CAAGATAGCCCCTGCCAATGCTGACTTTGCCTTCCGCTTCT CAAGATAGCCCCTGCCAATGCTGAATTTGCCTTCCGCTTCT < 41bp 0.548841800843743 0.881341621240334 0.15625489 0.31598252 prediction 0.664999640793181 Functional Gain - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95029986 chr14:95029990 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_100029 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53174 DeepMRMD:0;iRNA_m5C:0 53175 chrX 86773139 86773139 1 + C A LUAD 86773135 + 86773115 86773155 41 ACTGGCACCAGTGCCAGGACCGGCCCCTGCCCATCAGAGAG ACTGGCACCAGTGCCAGGACCGGCACCTGCCCATCAGAGAG < 41bp 0.457695757533755 0.83248810004916 0.06295884 0.21048644 prediction 0.66497620009832 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86773135 chrX:86773139 synonymous SNV . 0 25 hm5C_associated_SNPs_100030 0 0 0 0 0 chromatin 0.500231643921092 0.500231643915798 0 0 hm5C_site_53175 DeepMRMD:0;iRNA_m5C:0 53176 chr7 76121562 76121562 1 + C A STAD 76121558 + 76121538 76121578 41 CAAAGCCCAGCAGAGTCCAGCAGGCGCTCGCAGGTAGGTGC CAAAGCCCAGCAGAGTCCAGCAGGAGCTCGCAGGTAGGTGC < 41bp 0.525170336159854 0.857648778459408 0.9083983 0.91401106 prediction 0.664956884599108 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76121558 chr7:76121562 nonsynonymous SNV 0.720 3 25 hm5C_associated_SNPs_100031 0 0 1 0 2 Nucleus 0.50023164390301 0.500231643921925 0.01122552 3.78304054748924e-11 hm5C_site_53176 DeepMRMD:0.01122552;iRNA_m5C:3.78304054748924e-11 53177 chr11 6806660 6806660 1 + C A CESC 6806656 + 6806636 6806676 41 ATGTGGCCATTTGTCATCCTCTGACATACATGACCCTCATG ATGTGGCCATTTGTCATCCTCTGAAATACATGACCCTCATG < 41bp 0.534682457418747 0.86712883197008 0.33699214 0.30854607 prediction 0.664892749102666 Functional Gain - OR2AG1 ENSG00000170803 CDS Human other chr11:6806656 chr11:6806660 nonsynonymous SNV 0.794 0 25 hm5C_associated_SNPs_100032 0 0 0 0 0 unknown 0.50023164395454 0.500231647491737 0 7.07439395952747e-09 hm5C_site_53177 DeepMRMD:0;iRNA_m5C:7.07439395952747e-09 53178 chr5 140480871 140480871 1 + C A LUAD 140480867 + 140480847 140480887 41 AGCCGGAACTCAGCTTAACGCTCACCGCGCTGGACGGCGGC AGCCGGAACTCAGCTTAACGCTCAACGCGCTGGACGGCGGC < 41bp 0.543030520288303 0.875454483924986 0.46642345 0.89392245 prediction 0.664847927273366 Functional Gain - PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140480867 chr5:140480871 nonsynonymous SNV 0.078 3 25 hm5C_associated_SNPs_100033 0 0 0 0 0 exosome 0.500231646638366 0.500231643921092 0.7878449 0 hm5C_site_53178 DeepMRMD:0.7878449;iRNA_m5C:0 53179 chr7 143792445 143792445 1 + C A STAD 143792441 + 143792421 143792461 41 CGAGTACTGTCCCTAAGATGCTAGCAAATCTTGTGATGCAC CGAGTACTGTCCCTAAGATGCTAGAAAATCTTGTGATGCAC < 41bp 0.484336272492875 0.832413030016704 0.124126375 0.12358013 prediction 0.664826060033409 Functional Gain - OR2A12 ENSG00000221858 CDS Human protein_coding chr7:143792441 chr7:143792445 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_100034 0 0 0 0 0 unknown 0.500231669216551 0.500231643921411 0 0 hm5C_site_53179 DeepMRMD:0;iRNA_m5C:0 53180 chr11 67187018 67187018 1 + C A rs375626867 67187014 + 67186994 67187034 41 CGGCAGGCATGGCGTCTGCACCCGCGGGCAGAGCTGGGTGC CGGCAGGCATGGCGTCTGCACCCGAGGGCAGAGCTGGGTGC < 41bp 0.469531539004431 0.832404445790102 0.4168485 0.5442866 prediction 0.664808891580204 Functional Gain - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67187014 chr11:67187018 synonymous SNV . 0 25 hm5C_associated_SNPs_100035 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0.0885731999999999 0 hm5C_site_53180 DeepMRMD:0.0885731999999999;iRNA_m5C:0 53181 chr1 32502583 32502583 1 + C A GBM 32502579 + 32502559 32502599 41 TTGAATGGAGTACCTGAACCCTCTCGTGGACGTGGGGTGCC TTGAATGGAGTACCTGAACCCTCTAGTGGACGTGGGGTGCC < 41bp 0.444032788252674 0.832399346982323 0.150246 0.8949935 prediction 0.664798693964646 Functional Gain - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502579 chr1:32502583 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100036 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0.789987 0 hm5C_site_53181 DeepMRMD:0.789987;iRNA_m5C:0 53182 chr19 41903833 41903833 1 + C A PRAD 41903829 + 41903809 41903849 41 GGCAGCCTGGGGCTCGGGGACTGGCTAGATCTGTGAGTACC GGCAGCCTGGGGCTCGGGGACTGGATAGATCTGTGAGTACC < 41bp 0.519287675195011 0.851683188621528 0.7221899 0.8702445 prediction 0.664791026853034 Functional Gain - BCKDHA ENSG00000248098 CDS Human protein_coding chr19:41903829 chr19:41903833 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_100037 0 0 1 0 1 Cytosol 0.500231643921277 0.500231643922452 0.2961092 2.34967600931668e-12 hm5C_site_53182 DeepMRMD:0.2961092;iRNA_m5C:2.34967600931668e-12 53183 chr6 27215713 27215713 1 + T G UCEC 27215710 + 27215690 27215730 41 ATTCAGCAGTTTCAGGAGAGCTCTGCCCAGGGCCTGGGCCT ATTCAGCAGTTTCAGGAGAGCTCGGCCCAGGGCCTGGGCCT < 41bp 0.526307511847954 0.858680156415669 0.4565777 0.9038012 prediction 0.66474528913543 Functional Gain - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27215710 chr6:27215713 synonymous SNV . 0 24 hm5C_associated_SNPs_100038 0 0 0 0 1 Cytosol 0.500231643921088 0.500231643921092 0.8076024 9.32587340685131e-15 hm5C_site_53183 DeepMRMD:0.8076024;iRNA_m5C:9.32587340685131e-15 53184 chr6 42986253 42986253 1 + C A STAD 42986249 + 42986229 42986269 41 CTGAGGCTTGGCTGGACTGTCCCCCGACTCCAGTGCTGCCT CTGAGGCTTGGCTGGACTGTCCCCAGACTCCAGTGCTGCCT < 41bp 0.435455679332278 0.832326243619154 0.1568704 0.3345586 prediction 0.664652487238307 Functional Gain - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42986249 chr6:42986253 nonsynonymous SNV 0.666 0 25 hm5C_associated_SNPs_100039 0 0 1 0 1 Ribosome 0.500231643920969 0.500231644741391 0 1.64084434928213e-09 hm5C_site_53184 DeepMRMD:0;iRNA_m5C:1.64084434928213e-09 53185 chr1 67155937 67155937 1 + C A LUAD 67155933 + 67155913 67155953 41 CTCCAATAGCACCCTTAGCGCGGGCTGAAAGCACTTCTTCA CTCCAATAGCACCCTTAGCGCGGGATGAAAGCACTTCTTCA < 41bp 0.531694835437651 0.863956665677107 0.53778356 0.8614738 prediction 0.664523660478911 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67155933 chr1:67155937 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_100040 0 0 0 0 2 Cytosol 0.500231643919986 0.500231643921062 0.64738048 2.1529444893531e-12 hm5C_site_53185 DeepMRMD:0.64738048;iRNA_m5C:2.1529444893531e-12 53186 chr7 128095938 128095938 1 + T G rs545701895 128095935 + 128095915 128095955 41 CTGGGCGGCGTTGCTCTGCGCTCTGCGGCTGACGGCGCTTT CTGGGCGGCGTTGCTCTGCGCTCGGCGGCTGACGGCGCTTT < 41bp 0.513452514350939 0.845710066820595 0.1279265 0.21364042 prediction 0.664515104939314 Functional Gain - HILPDA ENSG00000273184 ncRNA_exonic Human processed_transcript chr7:128095935 chr7:128095938 . . 0 24 hm5C_associated_SNPs_100041 0 0 1 0 1 Ribosome 0.500231644015004 0.500231641017309 0 0 hm5C_site_53186 DeepMRMD:0;iRNA_m5C:0 53187 chr7 53103855 53103855 1 + C A LUAD 53103851 + 53103831 53103871 41 AGAGAGCCCGCCCCGCAGGCCGCCCCGCCGCCCAGGAGCTC AGAGAGCCCGCCCCGCAGGCCGCCACGCCGCCCAGGAGCTC < 41bp 0.473221913911049 0.83225531263242 0.15813145 0.107126415 prediction 0.66451062526484 Functional Gain - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103851 chr7:53103855 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_100042 0 0 0 0 0 unknown 0.500231643921092 0.500231643921451 0 7.17426118512776e-13 hm5C_site_53187 DeepMRMD:0;iRNA_m5C:7.17426118512776e-13 53188 chr11 36422802 36422802 1 + C A UCEC 36422798 + 36422778 36422818 41 CCCGATTCCAAGCAGCTCGGCAGGCTCTGCAGCTGAGCTCC CCCGATTCCAAGCAGCTCGGCAGGATCTGCAGCTGAGCTCC < 41bp 0.468646636023025 0.832246988293485 0.35741675 0.47082666 prediction 0.66449397658697 Functional Gain - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36422798 chr11:36422802 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_100043 0 0 0 0 1 Nucleus 0.500231644163023 0.500231644075262 0 0 hm5C_site_53188 DeepMRMD:0;iRNA_m5C:0 53189 chr17 21217509 21217509 1 + C A UCEC 21217505 + 21217485 21217525 41 AACCAAGAAGACGGACATTGCTGCCTTCGTGAAGGAGATCC AACCAAGAAGACGGACATTGCTGCATTCGTGAAGGAGATCC < 41bp 0.457779300199658 0.83224272398046 0.046754867 0.05845663 prediction 0.664485447960919 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21217505 chr17:21217509 synonymous SNV . 0 25 hm5C_associated_SNPs_100044 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643917234 0 0 hm5C_site_53189 DeepMRMD:0;iRNA_m5C:0 53190 chr16 30196587 30196587 1 + C A SKCM 30196583 + 30196563 30196603 41 CCGCCACGTGTTTGGACAGCCGGCCAAGGCCGACCAGTGCT CCGCCACGTGTTTGGACAGCCGGCAAAGGCCGACCAGTGCT < 41bp 0.47005185522055 0.832227197239952 0.5143186 0.84116864 prediction 0.664454394479903 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30196583 chr16:30196587 synonymous SNV . 0 25 hm5C_associated_SNPs_100045 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.65370008 0 hm5C_site_53190 DeepMRMD:0.65370008;iRNA_m5C:0 53191 chr14 24885464 24885464 1 + C A BLCA 24885460 + 24885440 24885480 41 GCAGGCTGGGCAGAAACTGTCTGGCTCCTCACCGTTTAGTT GCAGGCTGGGCAGAAACTGTCTGGATCCTCACCGTTTAGTT < 41bp 0.532935810740606 0.865153359051831 0.2980426 0.86260784 prediction 0.66443509662245 Functional Gain - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24885460 chr14:24885464 synonymous SNV . 0 25 hm5C_associated_SNPs_100046 0 0 0 0 0 Exosome 0.500232083585434 0.500231516379946 0.72521568 0 hm5C_site_53191 DeepMRMD:0.72521568;iRNA_m5C:0 53192 chr20 31805464 31805464 1 + C A rs17124391 31805460 + 31805440 31805480 41 ACAGAGACAACAAATCCACCCTGGCAAGAAGTAAGCTAAGC ACAGAGACAACAAATCCACCCTGGAAAGAAGTAAGCTAAGC < 41bp 0.530943573264421 0.863139085435832 0.058041632 0.11520782 prediction 0.664391024342822 Functional Gain - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31805460 chr20:31805464 nonsynonymous SNV 0.956 2 25 hm5C_associated_SNPs_100047 0 0 0 0 1 unknown 0.500231643946489 0.500231656270198 0 2.4647417884438e-08 hm5C_site_53192 DeepMRMD:0;iRNA_m5C:2.4647417884438e-08 53193 chr7 130002351 130002351 1 + C A LIHC 130002347 + 130002327 130002367 41 ATTCACTCCCGGGAGTGGATCACCCATGCCACCGGCATCTG ATTCACTCCCGGGAGTGGATCACCAATGCCACCGGCATCTG < 41bp 0.566667729062608 0.898862814126137 0.16445643 0.17042208 prediction 0.664390170127057 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002347 chr7:130002351 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_100048 0 0 0 0 2 exosome 0.500231644220313 0.500231586251627 0 0 hm5C_site_53193 DeepMRMD:0;iRNA_m5C:0 53194 chr7 158716372 158716372 1 + T G GBM 158716369 + 158716349 158716389 41 GAAGACTCAAGGCTGCATTACTCTGTGACGCTGAGCGATGG GAAGACTCAAGGCTGCATTACTCGGTGACGCTGAGCGATGG < 41bp 0.473515283233228 0.832189855303064 0.21064603 0.29002684 prediction 0.664379710606128 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158716369 chr7:158716372 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_100049 0 0 1 0 1 Nucleus 0.500231643916384 0.500231643921093 0 9.41757782868535e-12 hm5C_site_53194 DeepMRMD:0;iRNA_m5C:9.41757782868535e-12 53195 chr12 12510074 12510074 1 + C A rs12826711 12510070 + 12510050 12510090 41 CCAGTGAGTGAAAGCGGCGCCGCCCGCCGGCCGCAGGTGCG CCAGTGAGTGAAAGCGGCGCCGCCAGCCGGCCGCAGGTGCG < 41bp 0.511505124420977 0.843642847435436 0.14052054 0.8208734 prediction 0.664275446028917 Functional Gain - BORCS5 ENSG00000165714 UTR5 Human protein_coding chr12:12510070 chr12:12510074 . . 0 25 hm5C_associated_SNPs_100050 0 0 0 0 0 insoluble cytoplasm 0.500231425834813 0.500231369335241 0.6417468 0 hm5C_site_53195 DeepMRMD:0.6417468;iRNA_m5C:0 53196 chr4 88035561 88035561 1 + C A PAAD 88035557 + 88035537 88035577 41 AACAAATGGCAGCTGGACAACTGGCTGACCAAAGTCAGCCA AACAAATGGCAGCTGGACAACTGGATGACCAAAGTCAGCCA < 41bp 0.540960301505307 0.873034979700345 0.09290242 0.116018385 prediction 0.664149356390077 Functional Gain - AFF1 ENSG00000172493 CDS Human protein_coding chr4:88035557 chr4:88035561 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_100051 0 0 1 0 1 Nucleus 0.500202994422053 0.5002215247355 0 3.70606268940143e-05 hm5C_site_53196 DeepMRMD:0;iRNA_m5C:3.70606268940143e-05 53197 chrX 13753123 13753123 1 + C A rs1039829942 13753119 + 13753099 13753139 41 CCCCCTCGTCTTGGCCCCACCGCCCGGGCTGGGCACTAAAC CCCCCTCGTCTTGGCCCCACCGCCAGGGCTGGGCACTAAAC < 41bp 0.487705127703623 0.831995522388373 0.09396753 0.5329838 prediction 0.663991044776747 Functional Gain - OFD1 ENSG00000046651 UTR5 Human protein_coding chrX:13753119 chrX:13753123 . . 0 25 hm5C_associated_SNPs_100052 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.0659676 0 hm5C_site_53197 DeepMRMD:0.0659676;iRNA_m5C:0 53198 chr3 115395373 115395373 1 + C A LUSC 115395369 + 115395349 115395389 41 GTCACTGCTGCTGCTGCCACCACCCCTGCCGCAGAGGATGC GTCACTGCTGCTGCTGCCACCACCACTGCCGCAGAGGATGC < 41bp 0.437525879924481 0.83198591013531 0.049647003 0.08213797 prediction 0.66397182027062 Functional Gain - GAP43 ENSG00000172020 CDS Human protein_coding chr3:115395369 chr3:115395373 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_100053 0 0 0 0 1 nucleus 0.500231649403809 0.500231992074527 0 6.85341437378639e-07 hm5C_site_53198 DeepMRMD:0;iRNA_m5C:6.85341437378639e-07 53199 chr16 31391181 31391181 1 + C A rs560912339 31391177 + 31391157 31391197 41 GGATGGATGTGGAGGTCTCCCACCCCCAGGTACCCAAGGAC GGATGGATGTGGAGGTCTCCCACCACCAGGTACCCAAGGAC < 41bp 0.442527435230178 0.831968258716254 0.08510861 0.044920325 prediction 0.663936517432508 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31391177 chr16:31391181 nonsynonymous SNV 0.019 3 25 hm5C_associated_SNPs_100054 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_53199 DeepMRMD:0;iRNA_m5C:0 53200 chr19 38795048 38795048 1 + G T LUSC 38795052 - 38795032 38795072 41 TTGGGATCTCCCCCGTGGCCCGCCCCCACACCGGGCTTCTG TTGGGATCTCCCCCGTGGCCCGCCACCACACCGGGCTTCTG < 41bp 0.518604068620331 0.850545499265732 0.050750047 0.05763656 prediction 0.663882861290801 Functional Gain - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795052 chr19:38795048 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_100055 0 0 0 0 0 Ribosome 0.500231643920909 0.500231643921452 0 1.0875744749228e-12 hm5C_site_53200 DeepMRMD:0;iRNA_m5C:1.0875744749228e-12 53201 chr17 47297633 47297633 1 + C A LUAD 47297629 + 47297609 47297649 41 GGACCCACCTCCTCCACCAGCAGCCGTCGAGGTGTTCCAGC GGACCCACCTCCTCCACCAGCAGCAGTCGAGGTGTTCCAGC < 41bp 0.466953406836723 0.831923688246507 0.6274635 0.81229943 prediction 0.663847376493014 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47297629 chr17:47297633 synonymous SNV . 0 25 hm5C_associated_SNPs_100056 0 0 0 0 1 exosome 0.500231643919278 0.500232031309816 0.36967186 7.74781076851028e-07 hm5C_site_53201 DeepMRMD:0.36967186;iRNA_m5C:7.74781076851028e-07 53202 chr17 9792910 9792910 1 + C A HNSC 9792906 + 9792886 9792926 41 GTCTTGGGGAGCTGGGCGCCCAGCCCCAACAGGACCATGCA GTCTTGGGGAGCTGGGCGCCCAGCACCAACAGGACCATGCA < 41bp 0.527964504474747 0.859879406903369 0.47795314 0.4169408 prediction 0.663829804857244 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9792906 chr17:9792910 nonsynonymous SNV 0.041 2 25 hm5C_associated_SNPs_100057 0 0 0 0 0 nucleus 0.500231643921092 0.500231641726488 0 0 hm5C_site_53202 DeepMRMD:0;iRNA_m5C:0 53203 chrX 72674387 72674387 1 + C A UCEC 72674383 + 72674363 72674403 41 CATCTGCTGTTCGTGGATTTCAACCTATTGAGATACAGCAG CATCTGCTGTTCGTGGATTTCAACATATTGAGATACAGCAG < 41bp 0.536221559175293 0.868118090048401 0.03301412 0.02863419 prediction 0.663793061746216 Functional Gain - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72674383 chrX:72674387 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_100058 0 0 0 0 0 exosome 0.500231643921092 0.500231643920705 0 0 hm5C_site_53203 DeepMRMD:0;iRNA_m5C:0 53204 chr1 153177312 153177312 1 + T G UCEC 153177309 + 153177289 153177329 41 TTAAAGAAGCTGCTGCAACGCTGTTTCGAAAAGTGCCCATG TTAAAGAAGCTGCTGCAACGCTGGTTCGAAAAGTGCCCATG < 41bp 0.529247735902133 0.86109659589979 0.019274026 0.14819095 prediction 0.663697719995315 Functional Gain - LELP1 ENSG00000203784 CDS Human protein_coding chr1:153177309 chr1:153177312 nonsynonymous SNV 0.417 4 24 hm5C_associated_SNPs_100059 0 0 0 0 0 unknown 0.500231641514014 0.500231650369061 0 1.77100938358876e-08 hm5C_site_53204 DeepMRMD:0;iRNA_m5C:1.77100938358876e-08 53205 chrX 30269597 30269597 1 + C A HNSC 30269593 + 30269573 30269613 41 TAGAGCCAGGCGTCGCACTACTGCCACGACTTTTAGAGCGC TAGAGCCAGGCGTCGCACTACTGCAACGACTTTTAGAGCGC < 41bp 0.541125557469961 0.872952778307808 0.11905673 0.8429892 prediction 0.663654441675695 Functional Gain - MAGEB1 ENSG00000214107 CDS Human protein_coding chrX:30269593 chrX:30269597 synonymous SNV . 0 25 hm5C_associated_SNPs_100060 0 0 0 0 0 nucleolus 0.500231643889039 0.500231653909306 0.6859784 2.00405347872135e-08 hm5C_site_53205 DeepMRMD:0.6859784;iRNA_m5C:2.00405347872135e-08 53206 chr9 139232363 139232363 1 + C A UCEC 139232359 + 139232339 139232379 41 GCCGAGAGGAGGGCCTACAGCAACCTGGGGAACGCCCACGT GCCGAGAGGAGGGCCTACAGCAACATGGGGAACGCCCACGT < 41bp 0.557448988919826 0.889273840380885 0.8282231 0.793665 prediction 0.663649702922117 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139232359 chr9:139232363 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100061 0 0 0 0 2 Cytosol 0.50023164392109 0.500231643928378 0 1.45750078672791e-11 hm5C_site_53206 DeepMRMD:0;iRNA_m5C:1.45750078672791e-11 53207 chr20 24523999 24523999 1 + C A UCEC 24523995 + 24523975 24524015 41 AGTCAGTGGAGTCCCGCTACCGGCCCAACATCATCCTCTAT AGTCAGTGGAGTCCCGCTACCGGCACAACATCATCCTCTAT < 41bp 0.547529995605836 0.879354147542375 0.49977913 0.63392484 prediction 0.663648303873076 Functional Gain - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24523995 chr20:24523999 nonsynonymous SNV 0.559 5 25 hm5C_associated_SNPs_100062 0 0 0 0 0 exosome 0.500231745434504 0.500220081192521 0.26784968 0 hm5C_site_53207 DeepMRMD:0.26784968;iRNA_m5C:0 53208 chrX 26212753 26212753 1 + C A LUAD 26212749 + 26212729 26212769 41 GATTCCAGCGGCGAGTCCTACACCCTTGTCAGCAAGCTAGG GATTCCAGCGGCGAGTCCTACACCATTGTCAGCAAGCTAGG < 41bp 0.545214690794287 0.877006133597188 0.1097877 0.05393952 prediction 0.663582885605803 Functional Gain - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26212749 chrX:26212753 nonsynonymous SNV 0.064 0 25 hm5C_associated_SNPs_100063 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_53208 DeepMRMD:0;iRNA_m5C:0 53209 chr1 151018593 151018593 1 + C A BLCA 151018589 + 151018569 151018609 41 TTCTGGACAGCCTGGGGGAGCTGGCCCAACTCATATCCCTG TTCTGGACAGCCTGGGGGAGCTGGACCAACTCATATCCCTG < 41bp 0.451732323348352 0.831790288316868 0.1680238 0.20276877 prediction 0.663580576633737 Functional Gain - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151018589 chr1:151018593 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_100064 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_53209 DeepMRMD:0;iRNA_m5C:0 53210 chr1 186276169 186276169 1 + C A BLCA 186276165 + 186276145 186276185 41 CCCAAGGAGCCTGCACCCACCACCCCCAAGAAGCCTGCCCC CCCAAGGAGCCTGCACCCACCACCACCAAGAAGCCTGCCCC < 41bp 0.459554361289553 0.831787165608817 0.14428535 0.1999619 prediction 0.663574331217634 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276165 chr1:186276169 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100065 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643921112 0 3.88578058618805e-14 hm5C_site_53210 DeepMRMD:0;iRNA_m5C:3.88578058618805e-14 53211 chr1 1961455 1961455 1 + C A LGG 1961451 + 1961431 1961471 41 AGGAACGCCATTGTCCTCTTCTCCCTCTCTGCTGCCGGCGT AGGAACGCCATTGTCCTCTTCTCCATCTCTGCTGCCGGCGT < 41bp 0.452495403971264 0.831778045531962 0.34381723 0.9440652 prediction 0.663556091063924 Functional Gain - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961451 chr1:1961455 nonsynonymous SNV 0.577 4 25 hm5C_associated_SNPs_100066 0 0 0 0 1 Cytosol 0.500231643986218 0.500234186668723 0.8881304 5.08536501020451e-06 hm5C_site_53211 DeepMRMD:0.8881304;iRNA_m5C:5.08536501020451e-06 53212 chr20 36770478 36770478 1 + C A GBM 36770474 + 36770454 36770494 41 CCCCCACCTCACCAGATCATCTCGCTCTTGTCACCCTGGAT CCCCCACCTCACCAGATCATCTCGATCTTGTCACCCTGGAT < 41bp 0.494966837432883 0.83174930281009 0.05100873 0.31873056 prediction 0.66349860562018 Functional Gain - TGM2 ENSG00000198959 CDS Human protein_coding chr20:36770474 chr20:36770478 nonsynonymous SNV 0.790 3 25 hm5C_associated_SNPs_100067 0 0 0 0 0 Cytosol 0.500231643911562 0.500231643855158 0 0 hm5C_site_53212 DeepMRMD:0;iRNA_m5C:0 53213 chr11 111156507 111156507 1 + C A LUAD 111156503 + 111156483 111156523 41 CTTGAGTCCGGGAGCATCGCCCAGCACAGGGGCTCAAGCTG CTTGAGTCCGGGAGCATCGCCCAGAACAGGGGCTCAAGCTG < 41bp 0.526519269852636 0.858213089315 0.3811092 0.6513585 prediction 0.663387638924728 Functional Gain - C11orf53 ENSG00000150750 CDS Human protein_coding chr11:111156503 chr11:111156507 nonsynonymous SNV 0.327 1 25 hm5C_associated_SNPs_100068 0 0 0 0 0 Ribosome 0.500231643929883 0.500231625210521 0.302717 0 hm5C_site_53213 DeepMRMD:0.302717;iRNA_m5C:0 53214 chr7 134719421 134719421 1 + C A rs17804854 134719417 + 134719397 134719437 41 GAAAGCGGAAGGCTGTGATTCTGACTGCAAGGGTCCATCCA GAAAGCGGAAGGCTGTGATTCTGAATGCAAGGGTCCATCCA < 41bp 0.443488311076805 0.831691345025 0.13819978 0.18006518 prediction 0.66338269005 Functional Gain - AGBL3 ENSG00000146856 CDS Human protein_coding chr7:134719417 chr7:134719421 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100069 0 0 0 0 0 chromatin 0.500231643922201 0.500231643920652 0 0 hm5C_site_53214 DeepMRMD:0;iRNA_m5C:0 53215 chrX 106843738 106843738 1 + C A COAD 106843734 + 106843714 106843754 41 CTTCCGGATCCAGAGCTGTGCAGCCCAGGCCGTTCTTACGG CTTCCGGATCCAGAGCTGTGCAGCACAGGCCGTTCTTACGG < 41bp 0.51635617481299 0.848022151997045 0.23266524 0.21737453 prediction 0.663331954368111 Functional Gain - FRMPD3 ENSG00000147234 CDS Human protein_coding chrX:106843734 chrX:106843738 synonymous SNV . 0 25 hm5C_associated_SNPs_100070 0 0 0 0 0 exosome 0.500231643921101 0.50023166470076 0 4.15593179869944e-08 hm5C_site_53215 DeepMRMD:0;iRNA_m5C:4.15593179869944e-08 53216 chr19 57954757 57954757 1 + C A STAD 57954753 + 57954733 57954773 41 ATTCCAAAGCCAGCTTTGTCCACCCTGAAGGCCCAGCCCTG ATTCCAAAGCCAGCTTTGTCCACCATGAAGGCCCAGCCCTG < 41bp 0.533918778356249 0.865580747346762 0.051238775 0.050495625 prediction 0.663323937981025 Functional Gain - ZNF749 ENSG00000186230 CDS Human protein_coding chr19:57954753 chr19:57954757 nonsynonymous SNV 0.067 1 25 hm5C_associated_SNPs_100071 0 0 0 0 1 exosome 0.500231643925145 0.50023164432804 0 8.05790545399532e-10 hm5C_site_53216 DeepMRMD:0;iRNA_m5C:8.05790545399532e-10 53217 chr7 150439479 150439479 1 + C A LUAD 150439475 + 150439455 150439495 41 GAAAGTCCTGGTGGTTGACACGCCCTCCATCTTTGAGTCAC GAAAGTCCTGGTGGTTGACACGCCATCCATCTTTGAGTCAC < 41bp 0.54527753793891 0.876895751931565 0.051419497 0.115094304 prediction 0.663236427985309 Functional Gain - GIMAP1-GIMAP5;GIMAP5 ENSG00000196329 CDS Human protein_coding chr7:150439475 chr7:150439479 synonymous SNV . 0 25 hm5C_associated_SNPs_100072 0 0 0 0 0 unknown 0.500231643921226 0.500231643602613 0 0 hm5C_site_53217 DeepMRMD:0;iRNA_m5C:0 53218 chr17 4635147 4635147 1 + T G LUAD 4635144 + 4635124 4635164 41 CGGCAGGCGGCGGCCTTCACCGCTTCAGTGCAACACGTGGA CGGCAGGCGGCGGCCTTCACCGCGTCAGTGCAACACGTGGA < 41bp 0.471055149754786 0.831574023460498 0.19953859 0.7057619 prediction 0.663148046920997 Functional Gain - MED11 ENSG00000161920 CDS Human protein_coding chr17:4635144 chr17:4635147 synonymous SNV . 0 24 hm5C_associated_SNPs_100073 0 0 0 0 2 Ribosome 0.500231660057928 0.500229617168219 0.4115238 0 hm5C_site_53218 DeepMRMD:0.4115238;iRNA_m5C:0 53219 chr16 54966436 54966436 1 + C A KIRC 54966432 + 54966412 54966452 41 CTCTCCCTACGACCACACACCCGGCATGGCGGGCTCCTTGG CTCTCCCTACGACCACACACCCGGAATGGCGGGCTCCTTGG < 41bp 0.467700838285727 0.831493274437687 0.40676963 0.49554822 prediction 0.662986548875374 Functional Gain - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54966432 chr16:54966436 synonymous SNV . 0 25 hm5C_associated_SNPs_100074 0 0 0 0 1 exosome 0.50023164392109 0.500231643921094 0 7.7715611723761e-15 hm5C_site_53219 DeepMRMD:0;iRNA_m5C:7.7715611723761e-15 53220 chr2 1491722 1491722 1 + C A LGG 1491718 + 1491698 1491738 41 CCAATTCCAGCACCTTGGATCTGGCGTCCATCAACCTGCAG CCAATTCCAGCACCTTGGATCTGGAGTCCATCAACCTGCAG < 41bp 0.469676646612018 0.831475846654131 0.4841619 0.39152318 prediction 0.662951693308263 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1491718 chr2:1491722 nonsynonymous SNV 0.882 4 25 hm5C_associated_SNPs_100075 0 0 0 0 1 exosome 0.500231643919659 0.500231643736318 0 0 hm5C_site_53220 DeepMRMD:0;iRNA_m5C:0 53221 chr1 161495252 161495252 1 + C A STAD 161495248 + 161495228 161495268 41 TGCCCTGCGCAGGCTGCGCACAGCCTGTGAGCGCGCCAAGC TGCCCTGCGCAGGCTGCGCACAGCATGTGAGCGCGCCAAGC < 41bp 0.536073051951111 0.867531669380115 0.13700128 0.30028194 prediction 0.662917234858006 Functional Gain - HSPA6 ENSG00000173110 CDS Human protein_coding chr1:161495248 chr1:161495252 synonymous SNV . 0 25 hm5C_associated_SNPs_100076 0 0 0 0 0 exosome 0.500229204827536 0.500221041208622 0 0 hm5C_site_53221 DeepMRMD:0;iRNA_m5C:0 53222 chr1 12837281 12837281 1 + C A OV 12837277 + 12837257 12837297 41 GAGCTAGACCTGAGGGGCATCACACTGACCCATTTCAGTCC GAGCTAGACCTGAGGGGCATCACAATGACCCATTTCAGTCC < 41bp 0.531755017864748 0.86320120847454 0.3626396 0.24774939 prediction 0.662892381219584 Functional Gain - PRAMEF12 ENSG00000116726 CDS Human protein_coding chr1:12837277 chr1:12837281 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_100077 0 0 0 0 0 unknown 0.500231643921095 0.500231643921092 0 0 hm5C_site_53222 DeepMRMD:0;iRNA_m5C:0 53223 chr14 21526368 21526368 1 + C A OV 21526364 + 21526344 21526384 41 AGAGCCACGGGCCCATGTCCCTGACCATGGGTGAGCTCACC AGAGCCACGGGCCCATGTCCCTGAACATGGGTGAGCTCACC < 41bp 0.527254258381725 0.85866317660173 0.2713933 0.36804986 prediction 0.662817836440009 Functional Gain - RNASE8 ENSG00000173431 CDS Human protein_coding chr14:21526364 chr14:21526368 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_100078 0 0 0 0 0 unknown 0.500231643921095 0.500231643921093 0 0 hm5C_site_53223 DeepMRMD:0;iRNA_m5C:0 53224 chr20 55025690 55025690 1 + C A LUAD 55025686 + 55025666 55025706 41 GCAGCAGTTATATGACATACCAGCCAGCCCCAAGAAGGCAG GCAGCAGTTATATGACATACCAGCAAGCCCCAAGAAGGCAG < 41bp 0.44061766194205 0.831351962359726 0.102151334 0.09574112 prediction 0.662703924719452 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55025686 chr20:55025690 synonymous SNV . 0 25 hm5C_associated_SNPs_100079 0 0 1 0 1 chromatin 0.500231643921397 0.500231644440023 0 1.03725272815325e-09 hm5C_site_53224 DeepMRMD:0;iRNA_m5C:1.03725272815325e-09 53225 chr19 9492347 9492347 1 + C A LUSC 9492343 + 9492323 9492363 41 TGAGGGTACACGTGAGAACTCACACTGGAGAGAAGCCTTAT TGAGGGTACACGTGAGAACTCACAATGGAGAGAAGCCTTAT < 41bp 0.473107429131103 0.831328172028683 0.13449427 0.18596053 prediction 0.662656344057366 Functional Gain - ZNF177;ZNF559-ZNF177 ENSG00000188629;ENSG00000270011 CDS Human other chr19:9492343 chr19:9492347 nonsynonymous SNV 0.286 3 25 hm5C_associated_SNPs_100080 0 0 1 0 0 unknown 0.500231918027969 0.500231644533435 0 0 hm5C_site_53225 DeepMRMD:0;iRNA_m5C:0 53226 chr10 135053597 135053597 1 + C A LUAD 135053593 + 135053573 135053613 41 GCAGCTGCTGTGCCCTTGGGCACCCCTGTCCGGGCCCCAGG GCAGCTGCTGTGCCCTTGGGCACCACTGTCCGGGCCCCAGG < 41bp 0.52307382345796 0.854401950200002 0.099069685 0.061739206 prediction 0.662656253484085 Functional Gain - VENTX ENSG00000151650 CDS Human protein_coding chr10:135053593 chr10:135053597 synonymous SNV . 0 25 hm5C_associated_SNPs_100081 0 0 0 0 0 Nucleus 0.500231643921093 0.500231878697607 0 4.69553029569525e-07 hm5C_site_53226 DeepMRMD:0;iRNA_m5C:4.69553029569525e-07 53227 chr19 42795409 42795409 1 + C A HNSC 42795405 + 42795385 42795425 41 TCACCCAGGTACAGTACATCCTGCCCACGCTGCCCCAGCAG TCACCCAGGTACAGTACATCCTGCACACGCTGCCCCAGCAG < 41bp 0.450339334612466 0.831323481908272 0.1314877 0.31122363 prediction 0.662646963816544 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42795405 chr19:42795409 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100082 0 0 1 0 0 Cytosol 0.500231643188425 0.500255460293214 0 4.76342095787619e-05 hm5C_site_53227 DeepMRMD:0;iRNA_m5C:4.76342095787619e-05 53228 chr12 72388308 72388308 1 + T G LUAD 72388305 + 72388285 72388325 41 ACAAGAAATAGGTCTGGCGTCTCTGGGAGCATCAGATGAAG ACAAGAAATAGGTCTGGCGTCTCGGGGAGCATCAGATGAAG < 41bp 0.49312448376103 0.83132071872794 0.38249016 0.41735196 prediction 0.66264143745588 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72388305 chr12:72388308 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_100083 0 0 0 0 2 exosome 0.500231643753212 0.500231643921102 0 3.35780514504336e-10 hm5C_site_53228 DeepMRMD:0;iRNA_m5C:3.35780514504336e-10 53229 chr11 55579816 55579816 1 + C A LUSC 55579812 + 55579792 55579832 41 ATGCTGAACTCTGTGATCTACAGCCTGAGAAATAAAGATGT ATGCTGAACTCTGTGATCTACAGCATGAGAAATAAAGATGT < 41bp 0.485708422282593 0.831317866679889 0.055752277 0.030395836 prediction 0.662635733359779 Functional Gain - OR5L1 ENSG00000186117 CDS Human other chr11:55579812 chr11:55579816 nonsynonymous SNV 0.785 1 25 hm5C_associated_SNPs_100084 0 0 0 0 0 unknown 0.500231643920994 0.500231644834861 0 1.82773418622162e-09 hm5C_site_53229 DeepMRMD:0;iRNA_m5C:1.82773418622162e-09 53230 chrX 46433631 46433631 1 + C A UCEC 46433627 + 46433607 46433647 41 CAGTCTCCTCGGTTCCCAAGCAACCTCAGCGGCGCTGTCGG CAGTCTCCTCGGTTCCCAAGCAACATCAGCGGCGCTGTCGG < 41bp 0.474773444813027 0.831316639932817 0.22950074 0.17036796 prediction 0.662633279865634 Functional Gain - CHST7 ENSG00000147119 CDS Human protein_coding chrX:46433627 chrX:46433631 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_100085 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921042 0 0 hm5C_site_53230 DeepMRMD:0;iRNA_m5C:0 53231 chr14 74036526 74036526 1 + C A UCEC 74036522 + 74036502 74036542 41 GCACGAGCGCTACTTCCTCCCGCCCGGGGTGCGGCGCGAGC GCACGAGCGCTACTTCCTCCCGCCAGGGGTGCGGCGCGAGC < 41bp 0.517330490167038 0.84864503574501 0.1395204 0.75701165 prediction 0.662629091155943 Functional Gain - ACOT2 ENSG00000119673 CDS Human protein_coding chr14:74036522 chr14:74036526 synonymous SNV . 0 25 hm5C_associated_SNPs_100086 0 0 1 0 1 exosome 0.500231630215778 0.500231643920558 0.5140233 2.74095603991498e-08 hm5C_site_53231 DeepMRMD:0.5140233;iRNA_m5C:2.74095603991498e-08 53232 chr17 79495973 79495973 1 + C A COAD 79495969 + 79495949 79495989 41 GGACCGTGCACCTGGCCATCCACCCGCAGGCCCACCTGCTG GGACCGTGCACCTGGCCATCCACCAGCAGGCCCACCTGCTG < 41bp 0.54364280384729 0.874936205934671 0.078995466 0.18405098 prediction 0.662586804174763 Functional Gain - FSCN2 ENSG00000186765 CDS Human protein_coding chr17:79495969 chr17:79495973 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_100087 0 0 0 0 0 chromatin 0.500231643921116 0.500231643903001 0 0 hm5C_site_53232 DeepMRMD:0;iRNA_m5C:0 53233 chr11 55798679 55798679 1 + C A LUAD 55798675 + 55798655 55798695 41 CGCTCCTGTTTATGTACTTACAGCCCACCACTAGCTATTCC CGCTCCTGTTTATGTACTTACAGCACACCACTAGCTATTCC < 41bp 0.486072488256933 0.831288648178864 0.040890098 0.025020033 prediction 0.662577296357728 Functional Gain - OR5AS1 ENSG00000181785 CDS Human protein_coding chr11:55798675 chr11:55798679 nonsynonymous SNV 0.067 3 25 hm5C_associated_SNPs_100088 0 0 0 0 0 unknown 0.500231643964593 0.500231643920978 0 0 hm5C_site_53233 DeepMRMD:0;iRNA_m5C:0 53234 chr4 70156375 70156375 1 + C A LUAD 70156371 + 70156351 70156391 41 AATGGCATCTATGAGGCAATCTACCATGGGATCCCTATGGT AATGGCATCTATGAGGCAATCTACAATGGGATCCCTATGGT < 41bp 0.436646960542792 0.831234283185449 0.028243154 0.8973926 prediction 0.662468566370897 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70156371 chr4:70156375 nonsynonymous SNV 0.465 0 25 hm5C_associated_SNPs_100089 0 0 0 0 1 exosome 0.500231643925346 0.500231644074565 0.7947852 2.98437496937254e-10 hm5C_site_53234 DeepMRMD:0.7947852;iRNA_m5C:2.98437496937254e-10 53235 chrX 150912961 150912961 1 + C A rs756192921 150912957 + 150912937 150912977 41 CAGCCCTGAGCTGGCTGCTGCTGACGAGCCATAAGACCTGG CAGCCCTGAGCTGGCTGCTGCTGAAGAGCCATAAGACCTGG < 41bp 0.465864340919861 0.831219783776705 0.33536392 0.5303308 prediction 0.66243956755341 Functional Gain - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150912957 chrX:150912961 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_100090 0 0 0 0 0 unknown 0.500231630955132 0.50023164387864 0.0606616 2.58470160829916e-08 hm5C_site_53235 DeepMRMD:0.0606616;iRNA_m5C:2.58470160829916e-08 53236 chr11 48285736 48285736 1 + T G STAD 48285733 + 48285713 48285753 41 TCCCTCCATTTCTTTGGTGGCACTGAGGCCTTTCTCCTGAT TCCCTCCATTTCTTTGGTGGCACGGAGGCCTTTCTCCTGAT < 41bp 0.479882731623041 0.831197948871258 0.4234123 0.70139873 prediction 0.662395897742516 Functional Gain - OR4X1 ENSG00000176567 CDS Human protein_coding chr11:48285733 chr11:48285736 synonymous SNV . 0 24 hm5C_associated_SNPs_100091 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.40279746 0 hm5C_site_53236 DeepMRMD:0.40279746;iRNA_m5C:0 53237 chr7 130023543 130023543 1 + C A rs61735962 130023539 + 130023519 130023559 41 CCCCAGATCACTCAAGACTACGGGCAGGATGCAGCTTTCAC CCCCAGATCACTCAAGACTACGGGAAGGATGCAGCTTTCAC < 41bp 0.540661111614782 0.87181833241297 0.46022826 0.74771917 prediction 0.662314441596376 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023539 chr7:130023543 nonsynonymous SNV 0.354 0 25 hm5C_associated_SNPs_100092 0 0 0 0 2 Endoplasmic reticulum 0.500231643942754 0.500231643921092 0.49543834 0 hm5C_site_53237 DeepMRMD:0.49543834;iRNA_m5C:0 53238 chrX 34961704 34961704 1 + C A LUAD 34961700 + 34961680 34961720 41 ATCTCATCTCCGCGTGGATCCTCCCGAGACTGGAGTGTCCC ATCTCATCTCCGCGTGGATCCTCCAGAGACTGGAGTGTCCC < 41bp 0.438862916231066 0.831154381181772 0.15137446 0.96257794 prediction 0.662308762363543 Functional Gain - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961700 chrX:34961704 synonymous SNV . 0 25 hm5C_associated_SNPs_100093 0 0 0 0 0 unknown 0.500231640744171 0.500231690969261 0.92515588 1.00450180395839e-07 hm5C_site_53238 DeepMRMD:0.92515588;iRNA_m5C:1.00450180395839e-07 53239 chr2 220357594 220357594 1 + C A rs1078212 220357590 + 220357570 220357610 41 TTCCAGGGCCCACGCTGAGCCAGGCGGGCCTGGGGCTTCGG TTCCAGGGCCCACGCTGAGCCAGGAGGGCCTGGGGCTTCGG < 41bp 0.498524527725223 0.831138029165192 0.8228142 0.87908787 prediction 0.662276058330383 Functional Gain - SPEG ENSG00000227432 ncRNA_intronic Human antisense chr2:220357590 chr2:220357594 . . 0 25 hm5C_associated_SNPs_100094 0 0 0 0 0 Nucleus 0.500231643921093 0.500231643921092 0.11254734 0 hm5C_site_53239 DeepMRMD:0.11254734;iRNA_m5C:0 53240 chr8 145745326 145745326 1 + C A SKCM 145745322 + 145745302 145745342 41 CTACAGGAGTGTGCCCACTGCAGCCGTGCCCTCCTGCAGGA CTACAGGAGTGTGCCCACTGCAGCAGTGCCCTCCTGCAGGA < 41bp 0.546888291118101 0.878001461440078 0.5902642 0.48055875 prediction 0.662226340643954 Functional Gain - LRRC14 ENSG00000160959 CDS Human protein_coding chr8:145745322 chr8:145745326 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_100095 0 0 1 0 0 chromatin 0.500231643905018 0.500231616106576 0 0 hm5C_site_53240 DeepMRMD:0;iRNA_m5C:0 53241 chr5 78426858 78426858 1 + C A HNSC 78426854 + 78426834 78426874 41 CTGGGGAGTGACCAAAGGAACAGCCGAGCTGATGCAGCAGA CTGGGGAGTGACCAAAGGAACAGCAGAGCTGATGCAGCAGA < 41bp 0.534520705643395 0.86561260575944 0.3388322 0.6589362 prediction 0.66218380023209 Functional Gain - BHMT ENSG00000145692 CDS Human protein_coding chr5:78426854 chr5:78426858 synonymous SNV . 0 25 hm5C_associated_SNPs_100096 0 0 0 0 0 exosome 0.500231643921092 0.500231643921107 0.3178724 2.99760216648792e-14 hm5C_site_53241 DeepMRMD:0.3178724;iRNA_m5C:2.99760216648792e-14 53242 chr7 143826630 143826630 1 + T G MESO 143826627 + 143826607 143826647 41 CATGAGCTGGAGAGTGTGCACTGTCCTGGCTGTGGCTTCCT CATGAGCTGGAGAGTGTGCACTGGCCTGGCTGTGGCTTCCT < 41bp 0.472228831164636 0.83105973306806 0.1572029 0.22150964 prediction 0.662119466136119 Functional Gain - OR2A14 ENSG00000221938 CDS Human protein_coding chr7:143826627 chr7:143826630 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_100097 0 0 0 0 0 unknown 0.500231643921204 0.500231644016723 0 1.9103785220409e-10 hm5C_site_53242 DeepMRMD:0;iRNA_m5C:1.9103785220409e-10 53243 chr19 50305430 50305430 1 + C A rs528259357 50305426 + 50305406 50305446 41 CCCCTGGGCCCGGGCCCCTTCTCGCGGCCACCCCCAGGGCT CCCCTGGGCCCGGGCCCCTTCTCGAGGCCACCCCCAGGGCT < 41bp 0.483364624923598 0.831050145595732 0.50000805 0.94160914 prediction 0.662100291191464 Functional Gain - AP2A1 ENSG00000196961 intronic Human protein_coding chr19:50305426 chr19:50305430 . . 0 25 hm5C_associated_SNPs_100098 0 0 1 0 0 Ribosome 0.500231643919934 0.500231645034256 0.88320218 2.22864238175191e-09 hm5C_site_53243 DeepMRMD:0.88320218;iRNA_m5C:2.22864238175191e-09 53244 chr20 21686923 21686923 1 + C A rs532901433 21686919 + 21686899 21686939 41 TGCCCACTCCAAGCCAGACCCAGGCGGTTTGCCCTTGGACT TGCCCACTCCAAGCCAGACCCAGGAGGTTTGCCCTTGGACT < 41bp 0.51426352086721 0.845290445150681 0.9464041 0.95864326 prediction 0.662053848566942 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21686919 chr20:21686923 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_100099 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.0244783200000001 0 hm5C_site_53244 DeepMRMD:0.0244783200000001;iRNA_m5C:0 53245 chr2 70165308 70165308 1 + T G OV 70165305 + 70165285 70165325 41 AGCAGCAGCAGTGTGAGCGACTCTGACGAGCGGGGCAGCAT AGCAGCAGCAGTGTGAGCGACTCGGACGAGCGGGGCAGCAT < 41bp 0.4923255095798 0.83100449378484 0.20671016 0.5523713 prediction 0.66200898756968 Functional Gain - MXD1 ENSG00000059728 CDS Human protein_coding chr2:70165305 chr2:70165308 synonymous SNV . 0 24 hm5C_associated_SNPs_100100 0 0 1 0 2 Cytosol 0.500232163645824 0.500231645893522 0.1047426 0 hm5C_site_53245 DeepMRMD:0.1047426;iRNA_m5C:0 53246 chr1 89834164 89834164 1 + T G OV 89834161 + 89834141 89834181 41 GTTTGCCTGGTGGAAAATAACAATGAGCAGCTATTGGTGAA GTTTGCCTGGTGGAAAATAACAAGGAGCAGCTATTGGTGAA < 41bp 0.486773910788011 0.830998713807303 0.26819396 0.9013126 prediction 0.661997427614607 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89834161 chr1:89834164 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_100101 0 0 0 0 1 exosome 0.500231643867925 0.500231643921091 0.8026252 1.06330277915845e-10 hm5C_site_53246 DeepMRMD:0.8026252;iRNA_m5C:1.06330277915845e-10 53247 chr12 47629748 47629748 1 + C A BRCA 47629744 + 47629724 47629764 41 CCTTACCTTCCCCCACATACCGCCCCCTGCTTGGGTTCCCA CCTTACCTTCCCCCACATACCGCCACCTGCTTGGGTTCCCA < 41bp 0.449266091482314 0.83098767195186 0.04030913 0.200003 prediction 0.661975343903719 Functional Gain - PCED1B ENSG00000179715 CDS Human protein_coding chr12:47629744 chr12:47629748 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_100102 0 0 0 0 0 Nucleus 0.500231643921092 0.500231648058778 0 8.27537105507758e-09 hm5C_site_53247 DeepMRMD:0;iRNA_m5C:8.27537105507758e-09 53248 chr7 106509579 106509579 1 + C A COAD 106509575 + 106509555 106509595 41 TCCATTCTTCTGGACAATTACTGCCACCCGATAGCCCTGCC TCCATTCTTCTGGACAATTACTGCAACCCGATAGCCCTGCC < 41bp 0.434754573033354 0.830985803436092 0.057222784 0.06139332 prediction 0.661971606872183 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106509575 chr7:106509579 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_100103 0 0 0 0 0 Cytosol 0.500231643961913 0.500231642717976 0 0 hm5C_site_53248 DeepMRMD:0;iRNA_m5C:0 53249 chr10 121182770 121182770 1 + C A LGG 121182766 + 121182746 121182786 41 GCCGTGCAAAGAACTCTTTTCTGCCTGTGCACAGTAAGTGC GCCGTGCAAAGAACTCTTTTCTGCATGTGCACAGTAAGTGC < 41bp 0.440696948788633 0.830979362009118 0.24824733 0.8050443 prediction 0.661958724018237 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121182766 chr10:121182770 synonymous SNV . 0 25 hm5C_associated_SNPs_100104 0 0 1 0 2 Cytosol 0.500118729965015 0.498881299125095 0.6100886 0 hm5C_site_53249 DeepMRMD:0.6100886;iRNA_m5C:0 53250 chr3 53219646 53219646 1 + C A rs201862364 53219642 + 53219622 53219662 41 AGCCTCCCGGAGATCAGACTCAGCCTCCTCAGAGCCTGTTG AGCCTCCCGGAGATCAGACTCAGCATCCTCAGAGCCTGTTG < 41bp 0.552356713705131 0.883313120811708 0.8424461 0.8920629 prediction 0.661912814213154 Functional Gain - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53219642 chr3:53219646 synonymous SNV . 0 25 hm5C_associated_SNPs_100105 0 0 1 0 2 Cytosol 0.500231645181494 0.500231782830073 0.0992336 2.75297159513244e-07 hm5C_site_53250 DeepMRMD:0.0992336;iRNA_m5C:2.75297159513244e-07 53251 chr22 39884172 39884172 1 + C A LUAD 39884168 + 39884148 39884188 41 CGCCACAAGGTGCTCTATGTCTTCCTGGACCACTTCCCGCC CGCCACAAGGTGCTCTATGTCTTCATGGACCACTTCCCGCC < 41bp 0.439370192963766 0.830927309700027 0.07469663 0.16225922 prediction 0.661854619400055 Functional Gain - MGAT3 ENSG00000128268 CDS Human protein_coding chr22:39884168 chr22:39884172 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_100106 0 0 0 0 0 Endoplasmic reticulum 0.500231644184949 0.500231643920079 0 0 hm5C_site_53251 DeepMRMD:0;iRNA_m5C:0 53252 chr3 42265636 42265636 1 + C A rs147114011 42265632 + 42265612 42265652 41 GCTGGCACACCACGAGCTGTCACGCGGCACGGGTCATAACA GCTGGCACACCACGAGCTGTCACGAGGCACGGGTCATAACA < 41bp 0.476371210088475 0.830879905187638 0.39525706 0.3732 prediction 0.661759810375276 Functional Gain - TRAK1 ENSG00000182606 UTR3 Human protein_coding chr3:42265632 chr3:42265636 . . 0 25 hm5C_associated_SNPs_100107 0 0 1 0 0 Cytosol 0.500232308761157 0.50023164709541 0 0 hm5C_site_53252 DeepMRMD:0;iRNA_m5C:0 53253 chr5 1038596 1038596 1 + C A rs527272705 1038592 + 1038572 1038612 41 CCCATGGGGAGCCCAGCCCCCACCCCCCACCTCCGACAGCA CCCATGGGGAGCCCAGCCCCCACCACCCACCTCCGACAGCA < 41bp 0.495316388478052 0.830877180370088 0.09070733 0.084674835 prediction 0.661754360740177 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1038592 chr5:1038596 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_100108 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53253 DeepMRMD:0;iRNA_m5C:0 53254 chr17 62081214 62081214 1 + G T STAD 62081218 - 62081198 62081238 41 GTGGAGCCCCTGGACAGCCTCACCCTCTTCCTGTTCCGTGG GTGGAGCCCCTGGACAGCCTCACCATCTTCCTGTTCCGTGG < 41bp 0.452199374510627 0.83086821595551 0.06330621 0.025097162 prediction 0.661736431911019 Functional Gain - ICAM2 ENSG00000108622 CDS Human protein_coding chr17:62081218 chr17:62081214 nonsynonymous SNV 0.165 0 25 hm5C_associated_SNPs_100109 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643925398 0 8.61088977899271e-12 hm5C_site_53254 DeepMRMD:0;iRNA_m5C:8.61088977899271e-12 53255 chr7 76682235 76682235 1 + C A rs201695368 76682231 + 76682211 76682251 41 CCCTCATCCAGCCTCCAGCCCACCCGATTCCTCCCCACCTC CCCTCATCCAGCCTCCAGCCCACCAGATTCCTCCCCACCTC < 41bp 0.517107613730701 0.847971741685771 0.04590237 0.1550779 prediction 0.66172825591014 Functional Gain - PMS2P9 ENSG00000205482;ENSG00000259628 ncRNA_intronic Human other chr7:76682231 chr7:76682235 . . 0 25 hm5C_associated_SNPs_100110 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_53255 DeepMRMD:0;iRNA_m5C:0 53256 chr1 110086728 110086728 1 + C A GBM 110086724 + 110086704 110086744 41 AAGCAGTTTGTCTGCTTCTTCAAGCCAGCTCCAGAGGAGGA AAGCAGTTTGTCTGCTTCTTCAAGACAGCTCCAGAGGAGGA < 41bp 0.528200359411368 0.859054251832825 0.43957856 0.38168392 prediction 0.661707784842913 Functional Gain - GPR61 ENSG00000156097 CDS Human protein_coding chr1:110086724 chr1:110086728 nonsynonymous SNV 0.977 0 25 hm5C_associated_SNPs_100111 0 0 0 0 0 exosome 0.500124643503386 0.500230193534717 0 0.000211100062660785 hm5C_site_53256 DeepMRMD:0;iRNA_m5C:0.000211100062660785 53257 chr7 75508485 75508485 1 + C A ACC 75508481 + 75508461 75508501 41 ACCTTCTTCACTGCGCTGCTCTCGCTGCTGGTTTCCGGGCC ACCTTCTTCACTGCGCTGCTCTCGATGCTGGTTTCCGGGCC < 41bp 0.523000982858005 0.853759945557414 0.21859848 0.9290034 prediction 0.661517925398819 Functional Gain - RHBDD2 ENSG00000005486 CDS Human protein_coding chr7:75508481 chr7:75508485 nonsynonymous SNV 0.960 4 25 hm5C_associated_SNPs_100112 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921099 0.8580068 1.31006316905768e-14 hm5C_site_53257 DeepMRMD:0.8580068;iRNA_m5C:1.31006316905768e-14 53258 chr20 21367621 21367621 1 + C A GBM 21367617 + 21367597 21367637 41 GGGCCTGGTGGGTATCCACCCAGACGAGATGATCGTGGAGG GGGCCTGGTGGGTATCCACCCAGAAGAGATGATCGTGGAGG < 41bp 0.460524014972304 0.830753654384676 0.4613579 0.75566196 prediction 0.661507308769353 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21367617 chr20:21367621 synonymous SNV . 0 25 hm5C_associated_SNPs_100113 0 0 1 0 1 Cytosol 0.500231643974709 0.500231643921103 0.51132392 0 hm5C_site_53258 DeepMRMD:0.51132392;iRNA_m5C:0 53259 chr1 25611195 25611195 1 + C A UCEC 25611191 + 25611171 25611211 41 CTTGGTGTGCAGTGGGCAATCCTGCTGGACGGCTTCCTGAG CTTGGTGTGCAGTGGGCAATCCTGATGGACGGCTTCCTGAG < 41bp 0.540604292675605 0.871337454881743 0.18748268 0.31729013 prediction 0.661466324412275 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25611191 chr1:25611195 nonsynonymous SNV 0.140 2 25 hm5C_associated_SNPs_100114 0 0 0 0 1 Nucleus 0.500231643800217 0.500231643921378 0 2.42322606425205e-10 hm5C_site_53259 DeepMRMD:0;iRNA_m5C:2.42322606425205e-10 53260 chrX 65417541 65417541 1 + C A STAD 65417537 + 65417517 65417557 41 CACTACAGGCTCATCTTACCCTGGCTTGGTTGCCAAGCCCT CACTACAGGCTCATCTTACCCTGGATTGGTTGCCAAGCCCT < 41bp 0.459880450097461 0.830711749435795 0.19184259 0.40452886 prediction 0.661423498871589 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65417537 chrX:65417541 synonymous SNV . 0 25 hm5C_associated_SNPs_100115 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_53260 DeepMRMD:0;iRNA_m5C:0 53261 chr3 9957663 9957663 1 + C A rs112290380 9957659 + 9957639 9957679 41 AAGTCCCAGCCCAGTCCCCGCGCGCGTCCCTCTTCCTCCTC AAGTCCCAGCCCAGTCCCCGCGCGAGTCCCTCTTCCTCCTC < 41bp 0.492898485004077 0.830704998683614 0.5163263 0.76307154 prediction 0.661409997367228 Functional Gain - IL17RE ENSG00000163701 UTR3 Human protein_coding chr3:9957659 chr3:9957663 . . 0 25 hm5C_associated_SNPs_100116 0 0 0 0 0 Ribosome 0.500231643921086 0.500231643921091 0.49349048 1.04360964314765e-14 hm5C_site_53261 DeepMRMD:0.49349048;iRNA_m5C:1.04360964314765e-14 53262 chr1 154295484 154295484 1 + C A UCEC 154295480 + 154295460 154295500 41 GCCCACCTGAATCCAGCCTTCTCCCTGGCCATGTGCATCGT GCCCACCTGAATCCAGCCTTCTCCATGGCCATGTGCATCGT < 41bp 0.419080849024617 0.830691056278292 0.36003006 0.9670348 prediction 0.661382112556584 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295480 chr1:154295484 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_100117 0 0 0 0 1 Ribosome 0.500231643742471 0.500231600990708 0.9340696 0 hm5C_site_53262 DeepMRMD:0.9340696;iRNA_m5C:0 53263 chr3 12859112 12859112 1 + C A UCEC 12859108 + 12859088 12859128 41 GCCGTGTGGGTGCTGGCAGCCTGCCCGACTTCCTGCCCTTC GCCGTGTGGGTGCTGGCAGCCTGCACGACTTCCTGCCCTTC < 41bp 0.448911142265778 0.830684252724467 0.118104905 0.12211293 prediction 0.661368505448934 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12859108 chr3:12859112 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_100118 0 0 1 0 0 chromatin 0.500231643920457 0.500231643921092 0 1.27142740780073e-12 hm5C_site_53263 DeepMRMD:0;iRNA_m5C:1.27142740780073e-12 53264 chr13 37011865 37011865 1 + C A SARC 37011861 + 37011841 37011881 41 TGTGGGGTCCAAGAGCCCCCCAAGCAAGGGTTTGACATCTA TGTGGGGTCCAAGAGCCCCCCAAGAAAGGGTTTGACATCTA < 41bp 0.438674110475334 0.830648675713052 0.043542683 0.12439281 prediction 0.661297351426103 Functional Gain - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37011861 chr13:37011865 nonsynonymous SNV 0.169 0 25 hm5C_associated_SNPs_100119 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53264 DeepMRMD:0;iRNA_m5C:0 53265 chr1 116946585 116946585 1 + C A HNSC 116946581 + 116946561 116946601 41 GAAGTCAGAAAACTCATCATCAGGCGACGCCCTGGCGGTAA GAAGTCAGAAAACTCATCATCAGGAGACGCCCTGGCGGTAA < 41bp 0.543655760609532 0.874247779531578 0.9137724 0.9238237 prediction 0.661184037844093 Functional Gain - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116946581 chr1:116946585 synonymous SNV . 0 25 hm5C_associated_SNPs_100120 0 0 1 0 1 Nucleus 0.500231643094041 0.500231643920228 0.0201026 1.65237490357129e-09 hm5C_site_53265 DeepMRMD:0.0201026;iRNA_m5C:1.65237490357129e-09 53266 chr11 77907866 77907866 1 + C A UCEC 77907862 + 77907842 77907882 41 GCGCCGTGGAGTTCCTAGAGCAGGCCCAGCAGGTGAGCGGG GCGCCGTGGAGTTCCTAGAGCAGGACCAGCAGGTGAGCGGG < 41bp 0.505955576265983 0.836461635785188 0.84035957 0.8630785 prediction 0.661012119038411 Functional Gain - USP35 ENSG00000118369 CDS Human protein_coding chr11:77907862 chr11:77907866 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_100121 0 0 0 0 1 nucleolus 0.500231446392561 0.500231642945953 0.0454378600000001 3.93106783569408e-07 hm5C_site_53266 DeepMRMD:0.0454378600000001;iRNA_m5C:3.93106783569408e-07 53267 chrX 133379759 133379759 1 + T G UCEC 133379756 + 133379736 133379776 41 TAGAAAATACTATGCTTCTTCAATGGTAACATCATCAAGTA TAGAAAATACTATGCTTCTTCAAGGGTAACATCATCAAGTA < 41bp 0.499713215125559 0.830494341110552 0.11067632 0.45175427 prediction 0.660988682221105 Functional Gain - CCDC160 ENSG00000203952 CDS Human protein_coding chrX:133379756 chrX:133379759 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_100122 0 0 0 0 0 exosome 0.500231321768447 0.500231643884559 0 6.44232223567798e-07 hm5C_site_53267 DeepMRMD:0;iRNA_m5C:6.44232223567798e-07 53268 chr1 192780844 192780844 1 + C A rs76763381 192780840 + 192780820 192780860 41 CCTGGGTGTTCAGGAAACATCACTCAGAACTATTGATTCAA CCTGGGTGTTCAGGAAACATCACTAAGAACTATTGATTCAA < 41bp 0.522077427993357 0.852570191431534 0.06406748 0.11892995 prediction 0.660985526876354 Functional Gain - RGS2 ENSG00000116741 UTR3 Human protein_coding chr1:192780840 chr1:192780844 . . 0 25 hm5C_associated_SNPs_100123 0 0 1 0 0 Nucleus 0.500231643921079 0.500231643920839 0 0 hm5C_site_53268 DeepMRMD:0;iRNA_m5C:0 53269 chr6 126080731 126080731 1 + C A LUAD 126080727 + 126080707 126080747 41 TGTCCCTCTCTGCCACCGTCCACGCCGCAGCCGCAGCAGCC TGTCCCTCTCTGCCACCGTCCACGACGCAGCCGCAGCAGCC < 41bp 0.462249944884329 0.830469204982601 0.07978147 0.09025714 prediction 0.660938409965202 Functional Gain - HEY2 ENSG00000135547 CDS Human protein_coding chr6:126080727 chr6:126080731 nonsynonymous SNV 0.145 3 25 hm5C_associated_SNPs_100124 0 0 0 0 0 exosome 0.500259384803507 0.500229517306934 0 0 hm5C_site_53269 DeepMRMD:0;iRNA_m5C:0 53270 chr3 11300831 11300831 1 + T G BLCA 11300828 + 11300808 11300848 41 CCCCTGGTGGTGGTCCTGAGCACTATCTGCTTGGTCACAGT CCCCTGGTGGTGGTCCTGAGCACGATCTGCTTGGTCACAGT < 41bp 0.527108963537442 0.857577213367839 0.20846495 0.40695083 prediction 0.660936499660794 Functional Gain - HRH1 ENSG00000196639 CDS Human protein_coding chr3:11300828 chr3:11300831 synonymous SNV . 0 24 hm5C_associated_SNPs_100125 0 0 0 0 0 nucleus 0.500231643738968 0.500231643527858 0 0 hm5C_site_53270 DeepMRMD:0;iRNA_m5C:0 53271 chr14 81422108 81422108 1 + C A LGG 81422104 + 81422084 81422124 41 CGGAATGGGGTGTTCGTCTCCACCCTGCGAGTGCCATCAGG CGGAATGGGGTGTTCGTCTCCACCATGCGAGTGCCATCAGG < 41bp 0.455619296639323 0.830465315289569 0.24626455 0.15690878 prediction 0.660930630579138 Functional Gain - TSHR ENSG00000165409 CDS Human protein_coding chr14:81422104 chr14:81422108 synonymous SNV . 0 25 hm5C_associated_SNPs_100126 0 0 0 0 1 cytosol 0.500231643920858 0.500231625832901 0 0 hm5C_site_53271 DeepMRMD:0;iRNA_m5C:0 53272 chr2 71211937 71211937 1 + C A UCEC 71211933 + 71211913 71211953 41 CACGCCTGCAATGCATTCCACAGCCCACGGAGATGCCCAAG CACGCCTGCAATGCATTCCACAGCACACGGAGATGCCCAAG < 41bp 0.528939361194337 0.859404207679557 0.023130774 0.025999784 prediction 0.66092969297044 Functional Gain - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71211933 chr2:71211937 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_100127 0 0 0 0 0 exosome 0.500231643921092 0.500231644284434 0 7.26682269913681e-10 hm5C_site_53272 DeepMRMD:0;iRNA_m5C:7.26682269913681e-10 53273 chr8 98900453 98900453 1 + C A rs567767391 98900449 + 98900429 98900469 41 GGGGCAGACACGCTCGGACCCACCCGCAGACGGCCCTTCTG GGGGCAGACACGCTCGGACCCACCAGCAGACGGCCCTTCTG < 41bp 0.559044730119902 0.889509561870205 0.013185173 0.019520909 prediction 0.660929663500606 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:98900449 chr8:98900453 nonsynonymous SNV 0.414 2 25 hm5C_associated_SNPs_100128 0 0 0 0 1 Cytosol 0.500231644600579 0.500231643920944 0 0 hm5C_site_53273 DeepMRMD:0;iRNA_m5C:0 53274 chr5 157098676 157098676 1 + C A BRCA 157098672 + 157098652 157098692 41 CTGTGACCAGGGATCCTCCACGATCGGCGGGACCGCCGCCC CTGTGACCAGGGATCCTCCACGATAGGCGGGACCGCCGCCC < 41bp 0.482163695566326 0.83042633456154 0.07917571 0.515932 prediction 0.660852669123081 Functional Gain - C5orf52 ENSG00000187658 CDS Human protein_coding chr5:157098672 chr5:157098676 synonymous SNV . 0 25 hm5C_associated_SNPs_100129 0 0 0 0 0 unknown 0.500231389253706 0.500231633002906 0.0318639999999999 4.87498399648345e-07 hm5C_site_53274 DeepMRMD:0.0318639999999999;iRNA_m5C:4.87498399648345e-07 53275 chr6 112386021 112386021 1 + C A COAD 112386017 + 112385997 112386037 41 ATCATAATGGCCAAGTGTTTCAGCCCAACCCCTTGTTCAGC ATCATAATGGCCAAGTGTTTCAGCACAACCCCTTGTTCAGC < 41bp 0.452109125618177 0.830411951548134 0.35164005 0.4008343 prediction 0.660823903096268 Functional Gain - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112386017 chr6:112386021 nonsynonymous SNV 0.937 4 25 hm5C_associated_SNPs_100130 0 0 0 0 1 unknown 0.500231643921023 0.50023842515314 0 1.3562464233674e-05 hm5C_site_53275 DeepMRMD:0;iRNA_m5C:1.3562464233674e-05 53276 chr20 1235028 1235028 1 + C A UCEC 1235024 + 1235004 1235044 41 TTCTTGTCCTAAAGAAACAGCTGGCTATTGAGCTGAGCCAG TTCTTGTCCTAAAGAAACAGCTGGATATTGAGCTGAGCCAG < 41bp 0.534885046852317 0.865241562805951 0.39081427 0.65914446 prediction 0.660713031907268 Functional Gain - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1235024 chr20:1235028 nonsynonymous SNV 0.494 3 25 hm5C_associated_SNPs_100131 0 0 0 0 0 chromatin 0.500231605194717 0.500230881623491 0.31828892 0 hm5C_site_53276 DeepMRMD:0.31828892;iRNA_m5C:0 53277 chr12 133732292 133732292 1 + C A SKCM 133732288 + 133732268 133732308 41 CATTTGAGGCAAGTGGCATTCACCCAAAAGAAAGTACTTAC CATTTGAGGCAAGTGGCATTCACCAAAAAGAAAGTACTTAC < 41bp 0.456219902452641 0.830341423596442 0.42541575 0.7758571 prediction 0.660682847192885 Functional Gain - ZNF10 ENSG00000256223 CDS Human protein_coding chr12:133732288 chr12:133732292 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_100132 0 0 0 0 0 Nucleus 0.500231643975996 0.500231644935852 0.5517142 1.91971216700892e-09 hm5C_site_53277 DeepMRMD:0.5517142;iRNA_m5C:1.91971216700892e-09 53278 chr9 123888093 123888093 1 + C A BRCA 123888089 + 123888069 123888109 41 CCATTAAAGGCCAGGCAACTCAGGCCCAGAATGAGTGCAGG CCATTAAAGGCCAGGCAACTCAGGACCAGAATGAGTGCAGG < 41bp 0.531374954700974 0.86166661688686 0.40674022 0.78760064 prediction 0.660583324371773 Functional Gain - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123888089 chr9:123888093 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_100133 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0.57520128 0 hm5C_site_53278 DeepMRMD:0.57520128;iRNA_m5C:0 53279 chr12 81101796 81101796 1 + C A BLCA 81101792 + 81101772 81101812 41 ACTGACCGGCGAAAAGCCGCCACCCTGCGCGAAAGGAGGAG ACTGACCGGCGAAAAGCCGCCACCATGCGCGAAAGGAGGAG < 41bp 0.439079793723754 0.8302340886185 0.12621155 0.06838685 prediction 0.660468177237 Functional Gain - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81101792 chr12:81101796 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_100134 0 0 0 0 0 unknown 0.500231643928009 0.50023164395274 0 4.94622121038901e-11 hm5C_site_53279 DeepMRMD:0;iRNA_m5C:4.94622121038901e-11 53280 chr1 2939016 2939016 1 + C A LUAD 2939012 + 2938992 2939032 41 AACATCATCAGCCTCGGGGACCCGCTGCACCAGGCGCCCGA AACATCATCAGCCTCGGGGACCCGATGCACCAGGCGCCCGA < 41bp 0.47625099176673 0.830217960777313 0.062509835 0.43496507 prediction 0.660435921554627 Functional Gain - ACTRT2 ENSG00000169717 CDS Human protein_coding chr1:2939012 chr1:2939016 nonsynonymous SNV 0.906 4 25 hm5C_associated_SNPs_100135 0 0 0 0 0 unknown 0.500231643882018 0.500230565538942 0 0 hm5C_site_53280 DeepMRMD:0;iRNA_m5C:0 53281 chr14 20528431 20528431 1 + C A LUAD 20528427 + 20528407 20528447 41 TTTGGACATGTGTCTCTCCACTGCCACAACACCCAAGATGA TTTGGACATGTGTCTCTCCACTGCAACAACACCCAAGATGA < 41bp 0.535545550222641 0.865761749243151 0.058151543 0.1446639 prediction 0.660432398041019 Functional Gain - OR4L1 ENSG00000176246 CDS Human protein_coding chr14:20528427 chr14:20528431 synonymous SNV . 0 25 hm5C_associated_SNPs_100136 0 0 0 0 0 unknown 0.500231643921092 0.500231648187116 0 8.53204729089896e-09 hm5C_site_53281 DeepMRMD:0;iRNA_m5C:8.53204729089896e-09 53282 chr8 97847387 97847387 1 + T G LUAD 97847384 + 97847364 97847404 41 TTTGGCATCTCTCATTCGATCCGTGGCCTCCTTCTCCATCT TTTGGCATCTCTCATTCGATCCGGGGCCTCCTTCTCCATCT < 41bp 0.486339468928023 0.830199842036393 0.023780584 0.91208553 prediction 0.660399684072787 Functional Gain - CPQ ENSG00000104324 CDS Human protein_coding chr8:97847384 chr8:97847387 nonsynonymous SNV 0.964 3 24 hm5C_associated_SNPs_100137 0 0 1 0 1 Endoplasmic reticulum 0.50023166506566 0.500231643921076 0.82417106 0 hm5C_site_53282 DeepMRMD:0.82417106;iRNA_m5C:0 53283 chr8 81399527 81399527 1 + T G rs185916023 81399524 + 81399504 81399544 41 CAATGGGCGAGGGCCGGCGACTGTGGATCTGGAGCTGGACG CAATGGGCGAGGGCCGGCGACTGGGGATCTGGAGCTGGACG < 41bp 0.513329535499599 0.843522271855594 0.3478272 0.7802168 prediction 0.66038547271199 Functional Gain - ZBTB10 ENSG00000205189 CDS Human protein_coding chr8:81399524 chr8:81399527 nonsynonymous SNV 0.990 1 24 hm5C_associated_SNPs_100138 0 0 1 0 0 Endoplasmic reticulum 0.500233903507695 0.500231643869181 0.5604336 0 hm5C_site_53283 DeepMRMD:0.5604336;iRNA_m5C:0 53284 chr11 57569598 57569598 1 + T G UCEC 57569595 + 57569575 57569615 41 AACAAGATTGCCATAAAAAACTGTGATGGTGTGCCTGCCCT AACAAGATTGCCATAAAAAACTGGGATGGTGTGCCTGCCCT < 41bp 0.494416305808065 0.830179001146542 0.44891107 0.88768744 prediction 0.660358002293084 Functional Gain - CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57569595 chr11:57569598 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_100139 0 0 1 0 1 Nucleus 0.500231651716784 0.500231643921092 0.77537488 0 hm5C_site_53284 DeepMRMD:0.77537488;iRNA_m5C:0 53285 chr17 51901070 51901070 1 + C A rs543871191 51901066 + 51901046 51901086 41 GTGAGGAAGCGGCCTCTCAACCAGCGAGAGACAACCTTAAA GTGAGGAAGCGGCCTCTCAACCAGAGAGAGACAACCTTAAA < 41bp 0.537510557764719 0.867680168106581 0.34259582 0.4658728 prediction 0.660339220683725 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901066 chr17:51901070 synonymous SNV . 0 25 hm5C_associated_SNPs_100140 0 0 0 0 0 exosome 0.500231644051017 0.500231643878669 0 0 hm5C_site_53285 DeepMRMD:0;iRNA_m5C:0 53286 chr1 19018390 19018390 1 + C A LUSC 19018386 + 19018366 19018406 41 CTTTGAGAGGACCCACTACCCAGACATATACACCCGCGAGG CTTTGAGAGGACCCACTACCCAGAAATATACACCCGCGAGG < 41bp 0.455420086983715 0.830154412531333 0.19778278 0.37184578 prediction 0.660308825062665 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19018386 chr1:19018390 nonsynonymous SNV 0.880 3 25 hm5C_associated_SNPs_100141 0 0 0 0 1 exosome 0.500231643922081 0.500231643927845 0 1.15281117984978e-11 hm5C_site_53286 DeepMRMD:0;iRNA_m5C:1.15281117984978e-11 53287 chr16 20487007 20487007 1 + T G LUAD 20487004 + 20486984 20487024 41 CCATCTACAGAACTGCGTCACTGTAGGGGAGTCCCTTCTTC CCATCTACAGAACTGCGTCACTGGAGGGGAGTCCCTTCTTC < 41bp 0.498022877717021 0.83015402306153 0.09129053 0.36736625 prediction 0.66030804612306 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20487004 chr16:20487007 nonsynonymous SNV 0.039 0 24 hm5C_associated_SNPs_100142 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53287 DeepMRMD:0;iRNA_m5C:0 53288 chr11 94354053 94354053 1 + T G LIHC 94354050 + 94354030 94354070 41 TTTTCTCCTCAGGGCATAGTCAGTGTCCCAGCACCATGTCA TTTTCTCCTCAGGGCATAGTCAGGGTCCCAGCACCATGTCA < 41bp 0.465897484488064 0.830119648948443 0.43509626 0.9339192 prediction 0.660239297896887 Functional Gain - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94354050 chr11:94354053 nonsynonymous SNV 0.965 0 24 hm5C_associated_SNPs_100143 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.8678384 0 hm5C_site_53288 DeepMRMD:0.8678384;iRNA_m5C:0 53289 chr12 108961025 108961025 1 + C A THCA 108961021 + 108961001 108961041 41 CGCCAAGGAGCTCTGCCTTCCTCCCGTGAAACTGCACTGCT CGCCAAGGAGCTCTGCCTTCCTCCAGTGAAACTGCACTGCT < 41bp 0.568633064637963 0.898739487007121 0.27941638 0.96362114 prediction 0.660212844738317 Functional Gain - ISCU ENSG00000136003 CDS Human protein_coding chr12:108961021 chr12:108961025 synonymous SNV . 0 25 hm5C_associated_SNPs_100144 0 0 1 0 2 Cytosol 0.500231643921092 0.50023164397666 0.92724228 1.11134212943398e-10 hm5C_site_53289 DeepMRMD:0.92724228;iRNA_m5C:1.11134212943398e-10 53290 chr19 58565156 58565156 1 + T G LUSC 58565153 + 58565133 58565173 41 ATCGCGAGGAAGGGCCCTTTCCGTGCCCCGAGTGTGGCAAG ATCGCGAGGAAGGGCCCTTTCCGGGCCCCGAGTGTGGCAAG < 41bp 0.543366091730049 0.873432188059785 0.34424892 0.91842425 prediction 0.660132192659472 Functional Gain - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58565153 chr19:58565156 nonsynonymous SNV 0.163 4 24 hm5C_associated_SNPs_100145 0 0 0 0 0 exosome 0.500231643921054 0.500231643970963 0.8368485 9.98179316979986e-11 hm5C_site_53290 DeepMRMD:0.8368485;iRNA_m5C:9.98179316979986e-11 53291 chr12 121431384 121431384 1 + C A COAD 121431380 + 121431360 121431400 41 GCCCACAGGTGATGAGCTACCAACCAAGAAGGGGCGGAGGA GCCCACAGGTGATGAGCTACCAACAAAGAAGGGGCGGAGGA < 41bp 0.449171891697491 0.830050799003648 0.16956607 0.23333797 prediction 0.660101598007296 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121431380 chr12:121431384 synonymous SNV 0.998 0 25 hm5C_associated_SNPs_100146 0 0 0 0 0 cytosol 0.500231643921092 0.500231643920846 0 0 hm5C_site_53291 DeepMRMD:0;iRNA_m5C:0 53292 chr4 151504465 151504465 1 + C A HNSC 151504461 + 151504441 151504481 41 ACTTCGTGGACGACGGCTCGCTGCCCGGCTGCGCAGTGCTC ACTTCGTGGACGACGGCTCGCTGCACGGCTGCGCAGTGCTC < 41bp 0.544775566581062 0.874822146984812 0.004209012 0.013323456 prediction 0.660093160807501 Functional Gain - MAB21L2 ENSG00000181541 CDS Human protein_coding chr4:151504461 chr4:151504465 nonsynonymous SNV 0.968 4 25 hm5C_associated_SNPs_100147 0 0 1 0 0 nucleus 0.500153670131038 0.500468089784921 0 0.000628839307765805 hm5C_site_53292 DeepMRMD:0;iRNA_m5C:0.000628839307765805 53293 chr2 103324635 103324635 1 + C A LUSC 103324631 + 103324611 103324651 41 GGACCACCGTGCTCAATTTGCAGCCCAGAGCCAGGCGCTTC GGACCACCGTGCTCAATTTGCAGCACAGAGCCAGGCGCTTC < 41bp 0.537646997656723 0.867666349778259 0.12285641 0.08320689 prediction 0.660038704243072 Functional Gain - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103324631 chr2:103324635 nonsynonymous SNV 0.768 4 25 hm5C_associated_SNPs_100148 0 0 0 0 1 Ribosome 0.500231643921129 0.500231643921092 0 0 hm5C_site_53293 DeepMRMD:0;iRNA_m5C:0 53294 chr17 39394523 39394523 1 + C A LUAD 39394519 + 39394499 39394539 41 TGCCAGCCTTCCTGCTGCAGCACACCCTGCTGTCAGCCCAC TGCCAGCCTTCCTGCTGCAGCACAACCTGCTGTCAGCCCAC < 41bp 0.470256763222671 0.83001749993367 0.02955708 0.058268994 prediction 0.660034999867341 Functional Gain - KRTAP9-8 ENSG00000187272 CDS Human protein_coding chr17:39394519 chr17:39394523 nonsynonymous SNV 0.043 0 25 hm5C_associated_SNPs_100149 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 8.88178419700125e-16 hm5C_site_53294 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 53295 chr1 20644059 20644059 1 + C A rs61743892 20644055 + 20644035 20644075 41 CTGCTTCGGTGCCTGGGCCCCGGGCTCCTGGAATAAGTTGT CTGCTTCGGTGCCTGGGCCCCGGGATCCTGGAATAAGTTGT < 41bp 0.464028547913958 0.830011217111481 0.25687438 0.58716446 prediction 0.660022434222962 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20644055 chr1:20644059 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_100150 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.17432892 0 hm5C_site_53295 DeepMRMD:0.17432892;iRNA_m5C:0 53296 chr17 78071179 78071179 1 + C A LUAD 78071175 + 78071155 78071195 41 GACACACTCGAGGCCGACCTCACCCGGCTTGGGGCCCTCAA GACACACTCGAGGCCGACCTCACCAGGCTTGGGGCCCTCAA < 41bp 0.429634080381349 0.829971966067919 0.27282792 0.5656578 prediction 0.659943932135838 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78071175 chr17:78071179 synonymous SNV . 0 25 hm5C_associated_SNPs_100151 0 0 0 0 1 exosome 0.500231643922105 0.500237713287164 0.1313156 1.21387301186271e-05 hm5C_site_53296 DeepMRMD:0.1313156;iRNA_m5C:1.21387301186271e-05 53297 chr1 101005559 101005559 1 + C A BLCA 101005555 + 101005535 101005575 41 GGAGGAACGAGGAGTTCCGCCGCTCCGTGCGCTCAGTCCTG GGAGGAACGAGGAGTTCCGCCGCTACGTGCGCTCAGTCCTG < 41bp 0.47217484939947 0.829968623681665 0.4190851 0.39551306 prediction 0.659937247363329 Functional Gain - GPR88 ENSG00000181656 CDS Human protein_coding chr1:101005555 chr1:101005559 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_100152 0 0 0 0 0 exosome 0.50023164339112 0.500231643921092 0 1.05994457655356e-09 hm5C_site_53297 DeepMRMD:0;iRNA_m5C:1.05994457655356e-09 53298 chr7 73771660 73771660 1 + C A LUAD 73771656 + 73771636 73771676 41 CCGCAAGATCTCGGGCACCACGGCCTTGCAGGAGGCACTGA CCGCAAGATCTCGGGCACCACGGCATTGCAGGAGGCACTGA < 41bp 0.440327261962322 0.829958994753753 0.38307887 0.21391854 prediction 0.659917989507507 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73771656 chr7:73771660 synonymous SNV . 0 25 hm5C_associated_SNPs_100153 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53298 DeepMRMD:0;iRNA_m5C:0 53299 chr19 48908219 48908219 1 + C A UCEC 48908215 + 48908195 48908235 41 GACCCTGGGGCGGGCGAGGCCGTGCTCAGTGCCCAGCTCCG GACCCTGGGGCGGGCGAGGCCGTGATCAGTGCCCAGCTCCG < 41bp 0.47262516659418 0.829950400947111 0.897634 0.8918427 prediction 0.659900801894223 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48908215 chr19:48908219 nonsynonymous SNV 0.920 1 25 hm5C_associated_SNPs_100154 0 0 0 0 0 chromatin 0.500231643921019 0.500231643657304 0 0 hm5C_site_53299 DeepMRMD:0;iRNA_m5C:0 53300 chr11 56128599 56128599 1 + C A LUSC 56128595 + 56128575 56128615 41 ATGCTGAATCCCTTGATCTACAGCCTGAGGAATAAGGATGT ATGCTGAATCCCTTGATCTACAGCATGAGGAATAAGGATGT < 41bp 0.525335093500858 0.855280942545705 0.034027398 0.016584635 prediction 0.659891698089693 Functional Gain - OR8J1 ENSG00000172487 CDS Human protein_coding chr11:56128595 chr11:56128599 nonsynonymous SNV 0.793 4 25 hm5C_associated_SNPs_100155 0 0 0 0 0 unknown 0.500231643921092 0.500231643966548 0 9.09101682822211e-11 hm5C_site_53300 DeepMRMD:0;iRNA_m5C:9.09101682822211e-11 53301 chr19 55670569 55670569 1 + G T UCEC 55670573 - 55670553 55670593 41 CAGCCCTTGAGGGCCTGACCCAGCCTCTGCAGGGTGGGACC CAGCCCTTGAGGGCCTGACCCAGCATCTGCAGGGTGGGACC < 41bp 0.540177458505625 0.870108892967276 0.33473194 0.36895412 prediction 0.659862868923302 Functional Gain - DNAAF3 ENSG00000167646;ENSG00000267110 CDS Human other chr19:55670573 chr19:55670569 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_100156 0 0 1 0 0 nucleolus 0.500231643921092 0.500231643921092 0 0 hm5C_site_53301 DeepMRMD:0;iRNA_m5C:0 53302 chr7 110763849 110763849 1 + C A DLBC 110763845 + 110763825 110763865 41 CTCCCCAAGCTGGAATCACTCATGCTGAACAGCAATGCTCT CTCCCCAAGCTGGAATCACTCATGATGAACAGCAATGCTCT < 41bp 0.463482134876833 0.82987060916697 0.668908 0.6745234 prediction 0.659741218333941 Functional Gain - LRRN3 ENSG00000173114 CDS Human protein_coding chr7:110763845 chr7:110763849 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100157 0 0 0 0 0 chromatin 0.500231643343055 0.50023164392137 0.0112308000000001 1.1566307911437e-09 hm5C_site_53302 DeepMRMD:0.0112308000000001;iRNA_m5C:1.1566307911437e-09 53303 chr17 73821373 73821373 1 + C A rs183263103 73821369 + 73821349 73821389 41 GGTACTCATTCTATGACCACCGCCCCCAACCAGCTGCCCCC GGTACTCATTCTATGACCACCGCCACCAACCAGCTGCCCCC < 41bp 0.488913171040435 0.829854293873661 0.15714395 0.17322442 prediction 0.659708587747322 Functional Gain - UNK ENSG00000132478 UTR3 Human protein_coding chr17:73821369 chr17:73821373 . . 0 25 hm5C_associated_SNPs_100158 0 0 1 0 0 Cytosol 0.500231643921052 0.500231643919307 0 0 hm5C_site_53303 DeepMRMD:0;iRNA_m5C:0 53304 chr19 17886885 17886885 1 + C A SARC 17886881 + 17886861 17886901 41 ATGTGCACATCAAGCCTGCCCCGGCCCGGGCTCCAGCCTGC ATGTGCACATCAAGCCTGCCCCGGACCGGGCTCCAGCCTGC < 41bp 0.464102720150848 0.829837279548109 0.09795186 0.073610485 prediction 0.659674559096219 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17886881 chr19:17886885 nonsynonymous SNV 0.059 0 25 hm5C_associated_SNPs_100159 0 0 0 0 1 Cytosol 0.500231643921091 0.500231643921145 0 1.08801856413265e-13 hm5C_site_53304 DeepMRMD:0;iRNA_m5C:1.08801856413265e-13 53305 chr12 12870962 12870962 1 + T G UCEC 12870959 + 12870939 12870979 41 AGCCAGCGCAAGTGGAATTTCGATTTTCAGAATCACAAACC AGCCAGCGCAAGTGGAATTTCGAGTTTCAGAATCACAAACC < 41bp 0.481657317851747 0.829833096850663 0.23678803 0.45931676 prediction 0.659666193701326 Functional Gain - CDKN1B ENSG00000111276 CDS Human protein_coding chr12:12870959 chr12:12870962 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_100160 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643917067 0 0 hm5C_site_53305 DeepMRMD:0;iRNA_m5C:0 53306 chr16 31332573 31332573 1 + C A HNSC 31332569 + 31332549 31332589 41 TTTTTACCCTCAGCGGATAGCAGGCTCCAAGCTCTCTCCCA TTTTTACCCTCAGCGGATAGCAGGATCCAAGCTCTCTCCCA < 41bp 0.473841625249534 0.829828224125085 0.599114 0.88958275 prediction 0.65965644825017 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31332569 chr16:31332573 synonymous SNV . 0 25 hm5C_associated_SNPs_100161 0 0 0 0 0 Endoplasmic reticulum 0.500231643921012 0.500231643920516 0.5809375 0 hm5C_site_53306 DeepMRMD:0.5809375;iRNA_m5C:0 53307 chr19 757398 757398 1 + C A KIRP 757394 + 757374 757414 41 GCTGGGCCGTCATCCAGGGCCAGGCAGTCAGGAAGAGCAGC GCTGGGCCGTCATCCAGGGCCAGGAAGTCAGGAAGAGCAGC < 41bp 0.534882579139633 0.86470288531695 0.48211595 0.7977731 prediction 0.659640612354634 Functional Gain - MISP ENSG00000099812 CDS Human protein_coding chr19:757394 chr19:757398 nonsynonymous SNV 0.963 3 25 hm5C_associated_SNPs_100162 0 0 0 0 0 nucleus 0.500231644014481 0.500231643867517 0.5955462 0 hm5C_site_53307 DeepMRMD:0.5955462;iRNA_m5C:0 53308 chrX 152616163 152616163 1 + C A rs782490154 152616159 + 152616139 152616179 41 CAGGCACCCATCCTGACCCCCAGGCTGGAGAGGAGCCAAAA CAGGCACCCATCCTGACCCCCAGGATGGAGAGGAGCCAAAA < 41bp 0.501274655250385 0.83105591564797 0.6099913 0.87673587 prediction 0.659562520795171 Functional Gain - ZNF275 ENSG00000063587 UTR3 Human protein_coding chrX:152616159 chrX:152616163 . . 0 25 hm5C_associated_SNPs_100163 0 0 0 1 0 Ribosome 0.500231643921092 0.500231643921092 0.53348914 0 hm5C_site_53308 DeepMRMD:0.53348914;iRNA_m5C:0 53309 chr1 11345764 11345764 1 + C A UCEC 11345760 + 11345740 11345780 41 TCCTCATCACTTTTGGCCCGCTGGCTGTGATGTTCGCCTAC TCCTCATCACTTTTGGCCCGCTGGATGTGATGTTCGCCTAC < 41bp 0.532771664946376 0.862541134165687 0.15840405 0.4542258 prediction 0.659538938438622 Functional Gain - UBIAD1 ENSG00000120942 CDS Human protein_coding chr1:11345760 chr1:11345764 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100164 0 0 1 0 1 Endoplasmic reticulum 0.500231643914977 0.500231643921334 0 1.27147181672171e-11 hm5C_site_53309 DeepMRMD:0;iRNA_m5C:1.27147181672171e-11 53310 chr17 76230693 76230693 1 + T G rs79885699 76230690 + 76230670 76230710 41 GCAGTGCTGCACCGTGCAGTCATTGTGGTCCTGCCCCTGAG GCAGTGCTGCACCGTGCAGTCATGGTGGTCCTGCCCCTGAG < 41bp 0.465966932156948 0.829761072892169 0.3365289 0.895046 prediction 0.659522145784337 Functional Gain - TMEM235 ENSG00000204278 CDS Human protein_coding chr17:76230690 chr17:76230693 nonsynonymous SNV 0.960 0 24 hm5C_associated_SNPs_100165 0 0 0 0 1 exosome 0.500198388867699 0.500231645214736 0.790092 6.65126940737615e-05 hm5C_site_53310 DeepMRMD:0.790092;iRNA_m5C:6.65126940737615e-05 53311 chr3 33840424 33840424 1 + C A UCEC 33840420 + 33840400 33840440 41 GCACGAGGGCGCGCTCGAGACGCTCCTGAGGTGGGCGCGGG GCACGAGGGCGCGCTCGAGACGCTACTGAGGTGGGCGCGGG < 41bp 0.522249024161467 0.852003601298298 0.34381872 0.84802413 prediction 0.659509154273662 Functional Gain - PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33840420 chr3:33840424 synonymous SNV . 0 25 hm5C_associated_SNPs_100166 0 0 1 0 1 Nucleus 0.500231643940647 0.500231643927433 0.69604826 0 hm5C_site_53311 DeepMRMD:0.69604826;iRNA_m5C:0 53312 chr20 4158129 4158129 1 + C A UCEC 4158125 + 4158105 4158145 41 GAACGCAGCGTGGGCCGCATCAGCCTCTATTCCAAGAATGG GAACGCAGCGTGGGCCGCATCAGCATCTATTCCAAGAATGG < 41bp 0.444170846655399 0.829731609416806 0.048488706 0.22548321 prediction 0.659463218833612 Functional Gain - SMOX ENSG00000088826 CDS Human protein_coding chr20:4158125 chr20:4158129 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_100167 0 0 1 0 2 Ribosome 0.500231650712399 0.500231643926418 0 0 hm5C_site_53312 DeepMRMD:0;iRNA_m5C:0 53313 chr11 4615690 4615690 1 + C A CHOL 4615686 + 4615666 4615706 41 CTCTACACTACAAGAGAATTCTCACGCCTCAAGTGATGCTG CTCTACACTACAAGAGAATTCTCAAGCCTCAAGTGATGCTG < 41bp 0.456311643141302 0.829724185606665 0.03850156 0.08465579 prediction 0.65944837121333 Functional Gain - OR52I1 ENSG00000232268 CDS Human protein_coding chr11:4615686 chr11:4615690 nonsynonymous SNV 0.072 2 25 hm5C_associated_SNPs_100168 0 0 0 0 0 unknown 0.500231940236 0.500231619024222 0 0 hm5C_site_53313 DeepMRMD:0;iRNA_m5C:0 53314 chr5 121786482 121786482 1 + C A LUAD 121786478 + 121786458 121786498 41 CCTTGGAATTCCAGGATGCTCAGGCTTCCTCTAGAAATTCT CCTTGGAATTCCAGGATGCTCAGGATTCCTCTAGAAATTCT < 41bp 0.528544103445681 0.858235310376475 0.7781149 0.73859304 prediction 0.659382413861588 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786478 chr5:121786482 nonsynonymous SNV 0.981 1 25 hm5C_associated_SNPs_100169 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53314 DeepMRMD:0;iRNA_m5C:0 53315 chr18 21095957 21095957 1 + T G UCEC 21095954 + 21095934 21095974 41 AATGTCCTGCAGCCTTTTCACTTTAGGGTAAGAGGAAGCCT AATGTCCTGCAGCCTTTTCACTTGAGGGTAAGAGGAAGCCT < 41bp 0.47851400216154 0.829676434246353 0.13769141 0.13699526 prediction 0.659352868492705 Functional Gain - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21095954 chr18:21095957 nonsynonymous SNV 0.631 0 24 hm5C_associated_SNPs_100170 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53315 DeepMRMD:0;iRNA_m5C:0 53316 chr1 162325137 162325137 1 + C A UCEC 162325133 + 162325113 162325153 41 GAAGGAAGGAGGCTCTCACACAGGCTCCAAGGTAGGCAAGA GAAGGAAGGAGGCTCTCACACAGGATCCAAGGTAGGCAAGA < 41bp 0.505028804066491 0.834668703437584 0.80721617 0.8460535 prediction 0.659279798742186 Functional Gain - NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162325133 chr1:162325137 synonymous SNV . 0 25 hm5C_associated_SNPs_100171 0 0 1 0 1 cytosol 0.50022940976885 0.500231673826857 0.07767466 4.52811601503456e-06 hm5C_site_53316 DeepMRMD:0.07767466;iRNA_m5C:4.52811601503456e-06 53317 chr11 73103329 73103329 1 + T G BRCA 73103327 + 73103307 73103347 41 GCGGTGGTGAGACACGGCAGCCTGGGAACGGCACCCGGGCA GCGGTGGTGAGACACGGCAGCCGGGGAACGGCACCCGGGCA < 41bp 0.499865823180407 0.829620527060678 0.44129008 0.9100292 prediction 0.659241054121356 Functional Gain - RELT ENSG00000054967 CDS Human protein_coding chr11:73103327 chr11:73103329 synonymous SNV . 0 23 hm5C_associated_SNPs_100172 0 0 1 0 0 chromatin 0.500231645456801 0.500231643921063 0.8200584 0 hm5C_site_53317 DeepMRMD:0.8200584;iRNA_m5C:0 53318 chr22 42354235 42354235 1 + C A UCEC 42354231 + 42354211 42354251 41 GGACTCAGGCATGTCTATGGCTGCCTGTCCTGAGGCTCCGG GGACTCAGGCATGTCTATGGCTGCATGTCCTGAGGCTCCGG < 41bp 0.533401400330519 0.862976016385077 0.16703737 0.8414414 prediction 0.659149232109116 Functional Gain - LINC00634 ENSG00000205704 ncRNA_exonic Human transcribed_unitary_pseudogene chr22:42354231 chr22:42354235 . . 0 25 hm5C_associated_SNPs_100173 0 0 0 0 1 unknown 0.500231644198587 0.50023164479135 0.6828828 1.18552501149338e-09 hm5C_site_53318 DeepMRMD:0.6828828;iRNA_m5C:1.18552501149338e-09 53319 chr21 45993894 45993894 1 + C A COAD 45993890 + 45993870 45993910 41 TCAGGCTGCACCAGCTCCTGCACGCCCTCGTGCTGCCAGCA TCAGGCTGCACCAGCTCCTGCACGACCTCGTGCTGCCAGCA < 41bp 0.519504780137916 0.849062803199923 0.05297178 0.041603595 prediction 0.659116046124013 Functional Gain - KRTAP10-4 ENSG00000215454 CDS Human protein_coding chr21:45993890 chr21:45993894 nonsynonymous SNV 0.176 1 25 hm5C_associated_SNPs_100174 0 0 0 0 0 unknown 0.500231643733817 0.500231643918733 0 3.69831942848009e-10 hm5C_site_53319 DeepMRMD:0;iRNA_m5C:3.69831942848009e-10 53320 chrX 37028839 37028839 1 + C A LUAD 37028835 + 37028815 37028855 41 CTTCCCAAGCCTCGGGTATCCAGTCTCCACCTGGAGCCTCC CTTCCCAAGCCTCGGGTATCCAGTATCCACCTGGAGCCTCC < 41bp 0.475066655563963 0.829549495487398 0.13563332 0.07519841 prediction 0.659098990974796 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37028835 chrX:37028839 nonsynonymous SNV 0.013 1 25 hm5C_associated_SNPs_100175 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_53320 DeepMRMD:0;iRNA_m5C:0 53321 chr19 9361989 9361989 1 + T G HNSC 9361986 + 9361966 9362006 41 AACCTGTCCTTGGCTGACATCGGTTTCACCTCCACCACGGT AACCTGTCCTTGGCTGACATCGGGTTCACCTCCACCACGGT < 41bp 0.466383806240928 0.829515514132677 0.17370024 0.9486209 prediction 0.659031028265353 Functional Gain - OR7E24 ENSG00000237521 CDS Human protein_coding chr19:9361986 chr19:9361989 synonymous SNV . 0 24 hm5C_associated_SNPs_100176 0 0 0 0 0 unknown 0.500231452194325 0.499531835045896 0.8972418 0 hm5C_site_53321 DeepMRMD:0.8972418;iRNA_m5C:0 53322 chr14 60976401 60976401 1 + C A LUAD 60976397 + 60976377 60976417 41 GCAGGCGCTGTGGCTTGAAGCACACTACCAGGAGGCTGAGA GCAGGCGCTGTGGCTTGAAGCACAATACCAGGAGGCTGAGA < 41bp 0.453039762471905 0.829503831133317 0.10914028 0.21947876 prediction 0.659007662266633 Functional Gain - SIX6 ENSG00000184302 CDS Human protein_coding chr14:60976397 chr14:60976401 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_100177 0 0 0 0 0 unknown 0.500231578066103 0.500231608800676 0 6.14691468836526e-08 hm5C_site_53322 DeepMRMD:0;iRNA_m5C:6.14691468836526e-08 53323 chr19 3179074 3179074 1 + C A SKCM 3179070 + 3179050 3179090 41 ACATCACGCTGAGTGACCTGCTCACGGGCGCGGCCTACCTG ACATCACGCTGAGTGACCTGCTCAAGGGCGCGGCCTACCTG < 41bp 0.539222136089005 0.868695956611071 0.3369404 0.9129183 prediction 0.658947641044132 Functional Gain - S1PR4 ENSG00000125910 CDS Human protein_coding chr19:3179070 chr19:3179074 nonsynonymous SNV 0.295 4 25 hm5C_associated_SNPs_100178 0 0 0 0 0 exosome 0.500231635556127 0.500231643750752 0.8258366 1.63892504012608e-08 hm5C_site_53323 DeepMRMD:0.8258366;iRNA_m5C:1.63892504012608e-08 53324 chr1 46740345 46740345 1 + C A LUAD 46740341 + 46740321 46740361 41 GAACAAGCCATGGCCCGGGTCTGGCGAGATGGTCAAAAGAA GAACAAGCCATGGCCCGGGTCTGGAGAGATGGTCAAAAGAA < 41bp 0.456135458833463 0.829461658779608 0.24971959 0.293548 prediction 0.658923317559216 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46740341 chr1:46740345 synonymous SNV . 0 25 hm5C_associated_SNPs_100179 0 0 1 0 1 Ribosome 0.500231643905597 0.500231643920536 0 2.98796543063418e-11 hm5C_site_53324 DeepMRMD:0;iRNA_m5C:2.98796543063418e-11 53325 chr20 31786036 31786036 1 + C A UCEC 31786032 + 31786012 31786052 41 CCGAAGATGCTGAATGTCTCCGGCCTCTTTGTTCTCCTCTG CCGAAGATGCTGAATGTCTCCGGCATCTTTGTTCTCCTCTG < 41bp 0.50939588492029 0.838815831505049 0.29647192 0.45171905 prediction 0.658839893169518 Functional Gain - BPIFA4P ENSG00000183566 ncRNA_exonic Human transcribed_unitary_pseudogene chr20:31786032 chr20:31786036 . . 0 25 hm5C_associated_SNPs_100180 0 0 0 0 1 unknown 0.50023164392123 0.500231643927311 0 1.21616050563489e-11 hm5C_site_53325 DeepMRMD:0;iRNA_m5C:1.21616050563489e-11 53326 chr3 39431056 39431056 1 + C A UCEC 39431052 + 39431032 39431072 41 CCTGCTCTACCCTCCTTTTCCAACCTCTGGATCTCCTTAAA CCTGCTCTACCCTCCTTTTCCAACATCTGGATCTCCTTAAA < 41bp 0.443886373870288 0.829390655098616 0.3610378 0.24345791 prediction 0.658781310197232 Functional Gain - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431052 chr3:39431056 nonsynonymous SNV 0.986 5 25 hm5C_associated_SNPs_100181 0 0 1 0 2 Ribosome 0.500231643921125 0.500231643921088 0 0 hm5C_site_53326 DeepMRMD:0;iRNA_m5C:0 53327 chr14 35735958 35735958 1 + C A rs144536804 35735954 + 35735934 35735974 41 TCTTGAATGTCGTCTCTCAACTAGCCAAACGGAATCTGCGA TCTTGAATGTCGTCTCTCAACTAGACAAACGGAATCTGCGA < 41bp 0.545321559980323 0.874688385256824 0.3613277 0.17874038 prediction 0.658733650553002 Functional Gain - KIAA0391 ENSG00000100890;ENSG00000258790 CDS Human other chr14:35735954 chr14:35735958 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_100182 0 0 0 0 1 Endoplasmic reticulum 0.500231648921694 0.500232002786175 0 7.0772896143545e-07 hm5C_site_53327 DeepMRMD:0;iRNA_m5C:7.0772896143545e-07 53328 chr6 167708138 167708138 1 + C A OV 167708134 + 167708114 167708154 41 GCTGCAAGGGGACCATCATCCTCTCCATGTGTGGCTACGTG GCTGCAAGGGGACCATCATCCTCTACATGTGTGGCTACGTG < 41bp 0.435136182077503 0.829362426098562 0.9473961 0.92209256 prediction 0.658724852197124 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708134 chr6:167708138 nonsynonymous SNV 0.905 4 25 hm5C_associated_SNPs_100183 0 0 1 0 1 cytosol 0.500243143601296 0.500231644628383 0 0 hm5C_site_53328 DeepMRMD:0;iRNA_m5C:0 53329 chr2 61149451 61149451 1 + C A LUAD 61149447 + 61149427 61149467 41 GTCCTCTTCCAGTATGTCAGCAGGCGCCAATTCCAATACTA GTCCTCTTCCAGTATGTCAGCAGGAGCCAATTCCAATACTA < 41bp 0.510926352685651 0.840281577459105 0.58162457 0.727956 prediction 0.658710449546908 Functional Gain - REL ENSG00000162924 CDS Human protein_coding chr2:61149447 chr2:61149451 synonymous SNV . 0 25 hm5C_associated_SNPs_100184 0 0 1 0 0 Cytosol 0.500231643921091 0.500231643921092 0.29266286 2.66453525910038e-15 hm5C_site_53329 DeepMRMD:0.29266286;iRNA_m5C:2.66453525910038e-15 53330 chr1 215752442 215752442 1 + C A UCEC 215752438 + 215752418 215752458 41 AAGCCCGGGGAAATGGTACACAGCCTGTTCTCTCTGGAACG AAGCCCGGGGAAATGGTACACAGCATGTTCTCTCTGGAACG < 41bp 0.455037453680245 0.829351712485512 0.11421198 0.15225735 prediction 0.658703424971024 Functional Gain - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215752438 chr1:215752442 nonsynonymous SNV 0.894 4 25 hm5C_associated_SNPs_100185 0 0 0 0 1 Ribosome 0.50023164397511 0.500231643921092 0 0 hm5C_site_53330 DeepMRMD:0;iRNA_m5C:0 53331 chr19 46173898 46173898 1 + C A UCEC 46173894 + 46173874 46173914 41 CCCTTCTTTCTTTTCCTAGACAGGCTCTAAGGGGCAGACGG CCCTTCTTTCTTTTCCTAGACAGGATCTAAGGGGCAGACGG < 41bp 0.534286952714068 0.863635421569668 0.2515763 0.5407882 prediction 0.6586969377112 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46173894 chr19:46173898 synonymous SNV . 0 25 hm5C_associated_SNPs_100186 0 0 1 0 2 chromatin 0.500231643921092 0.500231643921092 0.0815764000000001 0 hm5C_site_53331 DeepMRMD:0.0815764000000001;iRNA_m5C:0 53332 chr14 21498837 21498837 1 + C A UCEC 21498833 + 21498813 21498853 41 ATGAACAACAAGAACTTCTCCAAGCTGTGCAAAGACTGTGG ATGAACAACAAGAACTTCTCCAAGATGTGCAAAGACTGTGG < 41bp 0.458353842346368 0.829339480634945 0.04647097 0.0491651 prediction 0.65867896126989 Functional Gain - TPPP2 ENSG00000179636 CDS Human protein_coding chr14:21498833 chr14:21498837 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_100187 0 0 0 0 1 exosome 0.510998355974802 0.500336447239961 0 0 hm5C_site_53332 DeepMRMD:0;iRNA_m5C:0 53333 chr17 32956131 32956131 1 + C A LUSC 32956127 + 32956107 32956147 41 AGGATCATGTGGCACATTGACTACCGTGGCCACGGCGCCCT AGGATCATGTGGCACATTGACTACAGTGGCCACGGCGCCCT < 41bp 0.567179672570226 0.896518516979699 0.20785695 0.85099244 prediction 0.658677688818946 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32956127 chr17:32956131 nonsynonymous SNV 0.965 2 25 hm5C_associated_SNPs_100188 0 0 1 0 1 exosome 0.500231643920872 0.500231643921094 0.70198488 4.42534897615587e-13 hm5C_site_53333 DeepMRMD:0.70198488;iRNA_m5C:4.42534897615587e-13 53334 chr5 177637903 177637903 1 + C A rs187811984 177637899 + 177637879 177637919 41 GTGGGAGGCTCTGCTTCCTGCTGCCGCTCTGCAGCCTGGAC GTGGGAGGCTCTGCTTCCTGCTGCAGCTCTGCAGCCTGGAC < 41bp 0.478555007457578 0.829331282484337 0.3152118 0.3783213 prediction 0.658662564968673 Functional Gain - HNRNPAB ENSG00000197451 UTR3 Human protein_coding chr5:177637899 chr5:177637903 . . 0 25 hm5C_associated_SNPs_100189 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921336 0 4.87165863205519e-13 hm5C_site_53334 DeepMRMD:0;iRNA_m5C:4.87165863205519e-13 53335 chr8 87163720 87163720 1 + T G COAD 87163717 + 87163697 87163737 41 ATACAAACCTTTATTTGAAGCTGTAGGTGGCAGTGGGGGAA ATACAAACCTTTATTTGAAGCTGGAGGTGGCAGTGGGGGAA < 41bp 0.511583428193858 0.84084015356895 0.14097258 0.21012005 prediction 0.658513450750185 Functional Gain - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87163717 chr8:87163720 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_100190 0 0 0 0 2 Cytosol 0.500231643921013 0.500231643921656 0 1.28652644093563e-12 hm5C_site_53335 DeepMRMD:0;iRNA_m5C:1.28652644093563e-12 53336 chr2 63283987 63283987 1 + C A rs187464743 63283983 + 63283963 63284003 41 CCCTCGATTTTGCTCCACGCCTGCCGGCCAGAGCCTCCCGG CCCTCGATTTTGCTCCACGCCTGCAGGCCAGAGCCTCCCGG < 41bp 0.534795392683891 0.863995629205791 0.16136342 0.24096414 prediction 0.658400473043799 Functional Gain - OTX1 ENSG00000115507 UTR3 Human protein_coding chr2:63283983 chr2:63283987 . . 0 25 hm5C_associated_SNPs_100191 0 0 1 0 0 nucleoplasm 0.500231643568156 0.500231643281445 0 0 hm5C_site_53336 DeepMRMD:0;iRNA_m5C:0 53337 chr1 89849661 89849661 1 + C A COAD 89849657 + 89849637 89849677 41 ACCTTCATGGAGCAGTGGATCGGGCCAAGAAGGAGGCAGCT ACCTTCATGGAGCAGTGGATCGGGACAAGAAGGAGGCAGCT < 41bp 0.525926292319342 0.855102107978349 0.9031473 0.907212 prediction 0.658351631318013 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89849657 chr1:89849661 nonsynonymous SNV 0.045 2 25 hm5C_associated_SNPs_100192 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0.00812940000000006 0 hm5C_site_53337 DeepMRMD:0.00812940000000006;iRNA_m5C:0 53338 chr18 11882545 11882545 1 + C A rs190236242 11882541 + 11882521 11882561 41 CCAAAAATACAAAAATTAGCCAGGCGTGGTGGCGGGCACCT CCAAAAATACAAAAATTAGCCAGGAGTGGTGGCGGGCACCT < 41bp 0.501810807972037 0.830985498108537 0.77009046 0.839377 prediction 0.658349380273001 Functional Gain - GNAL ENSG00000141404 UTR3 Human protein_coding chr18:11882541 chr18:11882545 . . 0 25 hm5C_associated_SNPs_100193 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921195 0.13857308 2.06057393370429e-13 hm5C_site_53338 DeepMRMD:0.13857308;iRNA_m5C:2.06057393370429e-13 53339 chr1 158152703 158152703 1 + C A UCS 158152699 + 158152679 158152719 41 GCCTGGCTGTCCCGTGGCCCCAGTCCTGGCCCTGGCCGTCT GCCTGGCTGTCCCGTGGCCCCAGTACTGGCCCTGGCCGTCT < 41bp 0.465357390910309 0.829171631580095 0.1845701 0.3216961 prediction 0.65834326316019 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152699 chr1:158152703 nonsynonymous SNV 0.458 2 25 hm5C_associated_SNPs_100194 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_53339 DeepMRMD:0;iRNA_m5C:0 53340 chr11 60885736 60885736 1 + C A LUAD 60885732 + 60885712 60885752 41 GACGGATGGCACATGGTTTGCAGCCAGAGCTGGGGCCGGAG GACGGATGGCACATGGTTTGCAGCAAGAGCTGGGGCCGGAG < 41bp 0.548690840922872 0.877851808342451 0.15102565 0.05125633 prediction 0.658321934839157 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60885732 chr11:60885736 nonsynonymous SNV 0.344 0 25 hm5C_associated_SNPs_100195 0 0 0 0 1 exosome 0.500231643921092 0.500231643774927 0 0 hm5C_site_53340 DeepMRMD:0;iRNA_m5C:0 53341 chr12 112924299 112924299 1 + C A ESCA 112924295 + 112924275 112924315 41 CCAGGGGAATACGGAGAGAACGGTCTGGCAATACCACTTTC CCAGGGGAATACGGAGAGAACGGTATGGCAATACCACTTTC < 41bp 0.45176892063209 0.829128293245431 0.37179613 0.3236432 prediction 0.658256586490862 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112924295 chr12:112924299 synonymous SNV . 0 25 hm5C_associated_SNPs_100196 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53341 DeepMRMD:0;iRNA_m5C:0 53342 chr1 18149613 18149613 1 + C A rs55738309 18149609 + 18149589 18149629 41 TCCCGAACATCGTGAACTACCTACCGTGCAAGGAGAACCCT TCCCGAACATCGTGAACTACCTACAGTGCAAGGAGAACCCT < 41bp 0.560374236450869 0.889498706944695 0.14565435 0.27609783 prediction 0.658248940987652 Functional Gain - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18149609 chr1:18149613 nonsynonymous SNV 0.157 4 25 hm5C_associated_SNPs_100197 0 0 0 0 0 unknown 0.500231643921173 0.500231643921091 0 0 hm5C_site_53342 DeepMRMD:0;iRNA_m5C:0 53343 chr11 59225153 59225153 1 + C A LUAD 59225149 + 59225129 59225169 41 GCGGAACAAGGCCCTCTCCACGTGCACGTCCCACATGCTGG GCGGAACAAGGCCCTCTCCACGTGAACGTCCCACATGCTGG < 41bp 0.526539585303986 0.855644526664496 0.15392977 0.26968762 prediction 0.658209882721018 Functional Gain - OR4D6 ENSG00000166884 CDS Human protein_coding chr11:59225149 chr11:59225153 stopgain 0.869 1 25 hm5C_associated_SNPs_100198 0 0 0 0 0 unknown 0.500231651786754 0.500231648405808 0 0 hm5C_site_53343 DeepMRMD:0;iRNA_m5C:0 53344 chr3 98072869 98072869 1 + C A HNSC 98072865 + 98072845 98072885 41 TATGTAGAGCGTCGTCTTCTCACACCAATGTACATCTTTCT TATGTAGAGCGTCGTCTTCTCACAACAATGTACATCTTTCT < 41bp 0.49697634662027 0.829096663333122 0.10398105 0.19650552 prediction 0.658193326666244 Functional Gain - OR5K4 ENSG00000196098 CDS Human protein_coding chr3:98072865 chr3:98072869 nonsynonymous SNV 0.932 3 25 hm5C_associated_SNPs_100199 0 0 0 0 0 unknown 0.500332368636218 0.500234538506452 0 0 hm5C_site_53344 DeepMRMD:0;iRNA_m5C:0 53345 chr17 7320563 7320563 1 + C A SARC 7320559 + 7320539 7320579 41 CCCGCCGCCTGCCACCCTGCCTCCCGAGCCCGAGCCCGAGC CCCGCCGCCTGCCACCCTGCCTCCAGAGCCCGAGCCCGAGC < 41bp 0.451668338290008 0.829094369625728 0.08884442 0.94680214 prediction 0.658188739251455 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7320559 chr17:7320563 synonymous SNV . 0 25 hm5C_associated_SNPs_100200 0 0 1 0 0 chromatin 0.50023164420148 0.500231643921093 0.89360428 0 hm5C_site_53345 DeepMRMD:0.89360428;iRNA_m5C:0 53346 chr19 38896204 38896204 1 + T G rs117354953 38896201 + 38896181 38896221 41 AAAGCCTCAGAGATCAGTACCGCTGCCGCCGCTGCCTCCTC AAAGCCTCAGAGATCAGTACCGCGGCCGCCGCTGCCTCCTC < 41bp 0.460985637112422 0.829091279374815 0.4420079 0.9077391 prediction 0.658182558749629 Functional Gain - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38896201 chr19:38896204 nonsynonymous SNV 0.935 1 24 hm5C_associated_SNPs_100201 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643931727 0.8154782 2.12683204381392e-11 hm5C_site_53346 DeepMRMD:0.8154782;iRNA_m5C:2.12683204381392e-11 53347 chr1 161697151 161697151 1 + T G rs542774231 161697148 + 161697128 161697168 41 CCCGGTGTCCAGATCGGTCCCGTTGGTCACCTCCGTCCGGA CCCGGTGTCCAGATCGGTCCCGTGGGTCACCTCCGTCCGGA < 41bp 0.535066797916781 0.86415753914907 0.30078146 0.8942425 prediction 0.658181482464577 Functional Gain - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161697148 chr1:161697151 nonsynonymous SNV 0.034 1 24 hm5C_associated_SNPs_100202 0 0 0 1 0 Endoplasmic reticulum 0.500230792072573 0.500453019445661 0.788485 0.000444454746177492 hm5C_site_53347 DeepMRMD:0.788485;iRNA_m5C:0.000444454746177492 53348 chr11 65161129 65161129 1 + C A rs2073800 65161125 + 65161105 65161145 41 GCTGCGCTTCACCAGTGCCCCAGACGATGACGTGGCCATGG GCTGCGCTTCACCAGTGCCCCAGAAGATGACGTGGCCATGG < 41bp 0.463560802914831 0.829090497125818 0.4193971 0.5867958 prediction 0.658180994251636 Functional Gain - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65161125 chr11:65161129 nonsynonymous SNV 0.061 0 25 hm5C_associated_SNPs_100203 0 0 0 0 2 Ribosome 0.500231643921278 0.500231643921093 0.1735916 0 hm5C_site_53348 DeepMRMD:0.1735916;iRNA_m5C:0 53349 chr1 209933490 209933490 1 + C A LUAD 209933486 + 209933466 209933506 41 GAGATCCGTGAAAGCCGCCGCTGCCGTCCCAATGTGACCAC GAGATCCGTGAAAGCCGCCGCTGCAGTCCCAATGTGACCAC < 41bp 0.560108977086606 0.889196966594553 0.18102232 0.3287512 prediction 0.658175979015894 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209933486 chr1:209933490 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_100204 0 0 0 0 0 exosome 0.500231540653321 0.500231638752129 0 1.96197615043303e-07 hm5C_site_53349 DeepMRMD:0;iRNA_m5C:1.96197615043303e-07 53350 chr19 35827052 35827052 1 + T G SKCM 35827049 + 35827029 35827069 41 ATGGGTATCCGATCCAATTGCAGTGGCTCCTAGAGGGGGTT ATGGGTATCCGATCCAATTGCAGGGGCTCCTAGAGGGGGTT < 41bp 0.449183611862226 0.82907860925758 0.41243693 0.90401673 prediction 0.658157218515161 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35827049 chr19:35827052 nonsynonymous SNV 0.050 5 24 hm5C_associated_SNPs_100205 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643920365 0.80803346 0 hm5C_site_53350 DeepMRMD:0.80803346;iRNA_m5C:0 53351 chr17 4496307 4496307 1 + C A rs112578571 4496303 + 4496283 4496323 41 CCTCGTCCTGTGAGCCTCTCCTTGCGGCTGCCCCACCAGCC CCTCGTCCTGTGAGCCTCTCCTTGAGGCTGCCCCACCAGCC < 41bp 0.437715490743127 0.829066200146036 0.31859022 0.3568232 prediction 0.658132400292072 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4496303 chr17:4496307 synonymous SNV . 0 25 hm5C_associated_SNPs_100206 0 0 0 0 1 insoluble cytoplasm 0.500231643920898 0.500231643921092 0 3.88133969408955e-13 hm5C_site_53351 DeepMRMD:0;iRNA_m5C:3.88133969408955e-13 53352 chr16 88779068 88779068 1 + C A UCEC 88779064 + 88779044 88779084 41 ACCGTCGGTGCTTTGGTGCTCTGCCCAGGAGCTGGTGGGAT ACCGTCGGTGCTTTGGTGCTCTGCACAGGAGCTGGTGGGAT < 41bp 0.452631035719793 0.829038918252569 0.14071172 0.5977987 prediction 0.658077836505138 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779064 chr16:88779068 synonymous SNV . 0 25 hm5C_associated_SNPs_100207 0 0 1 0 1 Cytosol 0.500231592457555 0.50023163697821 0.1955974 8.90413087706321e-08 hm5C_site_53352 DeepMRMD:0.1955974;iRNA_m5C:8.90413087706321e-08 53353 chr17 39412099 39412099 1 + C A UCEC 39412095 + 39412075 39412115 41 GACCACCTGCTGCAGGACCACTTGCTTCCAGCCCACCTGTG GACCACCTGCTGCAGGACCACTTGATTCCAGCCCACCTGTG < 41bp 0.526742299986724 0.855769941853426 0.113723576 0.22104734 prediction 0.658055283733405 Functional Gain - KRTAP9-9 ENSG00000198083 CDS Human protein_coding chr17:39412095 chr17:39412099 stopgain 0.623 0 25 hm5C_associated_SNPs_100208 0 0 0 0 0 unknown 0.500231643920737 0.500231643921078 0 6.81232847909996e-13 hm5C_site_53353 DeepMRMD:0;iRNA_m5C:6.81232847909996e-13 53354 chr8 11872328 11872328 1 + C A rs564668539 11872324 + 11872304 11872344 41 CTGGCACCCCTGGACCTCCGCGCCCGCGTCACTTACTCCTC CTGGCACCCCTGGACCTCCGCGCCAGCGTCACTTACTCCTC < 41bp 0.503878742836572 0.832905602724587 0.29780704 0.42808187 prediction 0.65805371977603 Functional Gain - DEFB134;DEFB130B ENSG00000255098 intronic Human other chr8:11872324 chr8:11872328 . . 0 25 hm5C_associated_SNPs_100209 0 0 0 0 0 unknown 0.500231643921156 0.500231643906304 0 0 hm5C_site_53354 DeepMRMD:0;iRNA_m5C:0 53355 chr2 108487306 108487306 1 + C A UCEC 108487302 + 108487282 108487322 41 TTGAAAATGATACTGGCTTCCAGGCTCAGGATATTAGTGGC TTGAAAATGATACTGGCTTCCAGGATCAGGATATTAGTGGC < 41bp 0.473410939979815 0.829017059416378 0.4480678 0.5003931 prediction 0.658034118832756 Functional Gain - RGPD4 ENSG00000196862 CDS Human protein_coding chr2:108487302 chr2:108487306 nonsynonymous SNV 0.527 1 25 hm5C_associated_SNPs_100210 0 0 0 0 0 membrane 0.500231643827824 0.500231648967498 0.00078620000000007 1.02793478173879e-08 hm5C_site_53355 DeepMRMD:0.00078620000000007;iRNA_m5C:1.02793478173879e-08 53356 chr16 1129698 1129698 1 + C A LUSC 1129694 + 1129674 1129714 41 TCGTCAACCTGGCCGTGGCGCTGCCCCAGGAGCCCGCCTCC TCGTCAACCTGGCCGTGGCGCTGCACCAGGAGCCCGCCTCC < 41bp 0.463375047195353 0.828965122298106 0.15977359 0.25202554 prediction 0.657930244596212 Functional Gain - SSTR5 ENSG00000162009 CDS Human protein_coding chr16:1129694 chr16:1129698 nonsynonymous SNV 0.849 1 25 hm5C_associated_SNPs_100211 0 0 0 0 0 exosome 0.500231643245535 0.5002292960903 0 0 hm5C_site_53356 DeepMRMD:0;iRNA_m5C:0 53357 chr8 17125809 17125809 1 + T G KIRC 17125806 + 17125786 17125826 41 CCTCAGGAAAAACCAGTGATCAGTGTTTATCCACCAATACG CCTCAGGAAAAACCAGTGATCAGGGTTTATCCACCAATACG < 41bp 0.530149745168014 0.859053116488869 0.24019128 0.9547322 prediction 0.65780674264171 Functional Gain - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17125806 chr8:17125809 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_100212 0 0 1 0 2 chromatin 0.500231643921074 0.500231643921092 0.9094644 3.66373598126302e-14 hm5C_site_53357 DeepMRMD:0.9094644;iRNA_m5C:3.66373598126302e-14 53358 chr22 29629429 29629429 1 + T G HNSC 29629426 + 29629406 29629446 41 AACCACTGGCCCCAGGGACCCACTGGGCCTCCAGGCCCTCC AACCACTGGCCCCAGGGACCCACGGGGCCTCCAGGCCCTCC < 41bp 0.459875882610404 0.828869034069909 0.15620893 0.83749485 prediction 0.657738068139817 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29629426 chr22:29629429 synonymous SNV . 0 24 hm5C_associated_SNPs_100213 0 0 0 0 1 chromatin 0.500231643778458 0.500231643921254 0.6749897 2.85591772453131e-10 hm5C_site_53358 DeepMRMD:0.6749897;iRNA_m5C:2.85591772453131e-10 53359 chr1 179783273 179783273 1 + C A LUAD 179783269 + 179783249 179783289 41 GAGTTACCCGGTGACCTGGCCAGGCTCTGGGCGTGAGGCCT GAGTTACCCGGTGACCTGGCCAGGATCTGGGCGTGAGGCCT < 41bp 0.470277363197084 0.828860705600675 0.8538319 0.90071476 prediction 0.657721411201351 Functional Gain - FAM163A ENSG00000143340 CDS Human protein_coding chr1:179783269 chr1:179783273 synonymous SNV . 0 25 hm5C_associated_SNPs_100214 0 0 0 0 0 exosome 0.500231643965449 0.500231643915392 0.0937657199999999 0 hm5C_site_53359 DeepMRMD:0.0937657199999999;iRNA_m5C:0 53360 chr20 42907638 42907638 1 + C A LUAD 42907634 + 42907614 42907654 41 TGGCTCTGTGGCTGTGCCTTCACCCTCGCTGATGTCCTCCT TGGCTCTGTGGCTGTGCCTTCACCATCGCTGATGTCCTCCT < 41bp 0.448040545696584 0.828856741371684 0.2395595 0.1277081 prediction 0.657713482743368 Functional Gain - GDAP1L1 ENSG00000124194 CDS Human protein_coding chr20:42907634 chr20:42907638 nonsynonymous SNV 0.979 4 25 hm5C_associated_SNPs_100215 0 0 0 0 1 nucleoplasm 0.500232035692185 0.500232260873579 0 4.50362788173564e-07 hm5C_site_53360 DeepMRMD:0;iRNA_m5C:4.50362788173564e-07 53361 chr17 61769133 61769133 1 + C A LUAD 61769129 + 61769109 61769149 41 AGTTGAAGGCTTACGGTGCTCTGACAGAGAGCGTGACCCGA AGTTGAAGGCTTACGGTGCTCTGAAAGAGAGCGTGACCCGA < 41bp 0.434706951071681 0.828843818271914 0.0332098 0.048768252 prediction 0.657687636543828 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61769129 chr17:61769133 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100216 0 0 0 0 1 Cytosol 0.500231654476003 0.500231643919797 0 0 hm5C_site_53361 DeepMRMD:0;iRNA_m5C:0 53362 chr6 121769060 121769060 1 + T G BLCA 121769057 + 121769037 121769077 41 TGCTGGACATGAATTACAGCCACTAGCCATTGTGGACCAGC TGCTGGACATGAATTACAGCCACGAGCCATTGTGGACCAGC < 41bp 0.488780291171434 0.828815170634045 0.005921364 0.022102207 prediction 0.657630341268091 Functional Gain - GJA1 ENSG00000152661 CDS Human protein_coding chr6:121769057 chr6:121769060 nonsynonymous SNV 0.919 4 24 hm5C_associated_SNPs_100217 0 0 1 0 0 Endoplasmic reticulum 0.500231643921003 0.500231644326169 0 8.10331135525644e-10 hm5C_site_53362 DeepMRMD:0;iRNA_m5C:8.10331135525644e-10 53363 chr6 50683317 50683317 1 + C A THCA 50683313 + 50683293 50683333 41 GGGGCTGGCCGCCGCGGGAGCAGACGACTTGCAGGTAAATA GGGGCTGGCCGCCGCGGGAGCAGAAGACTTGCAGGTAAATA < 41bp 0.468784446552166 0.82877618158892 0.8961474 0.9026016 prediction 0.65755236317784 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683313 chr6:50683317 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_100218 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.0129083999999999 0 hm5C_site_53363 DeepMRMD:0.0129083999999999;iRNA_m5C:0 53364 chr20 18296566 18296566 1 + T G OV 18296563 + 18296543 18296583 41 GAGGAGAAGACCATCGTGTGCAGTGACTGTGGCCTGGGCTT GAGGAGAAGACCATCGTGTGCAGGGACTGTGGCCTGGGCTT < 41bp 0.543338514205491 0.872106342824618 0.29110193 0.9047031 prediction 0.657535657238252 Functional Gain - ZNF133 ENSG00000125846 CDS Human protein_coding chr20:18296563 chr20:18296566 nonsynonymous SNV 0.966 0 24 hm5C_associated_SNPs_100219 0 0 0 0 0 Cytosol 0.500231644027931 0.500231643921092 0.8094062 0 hm5C_site_53364 DeepMRMD:0.8094062;iRNA_m5C:0 53365 chr2 239040220 239040220 1 + C A rs190347409 239040216 + 239040196 239040236 41 GCTCGGGCCCCTGCCTCACGCCGCCGTCCCCTGCAGCGGCC GCTCGGGCCCCTGCCTCACGCCGCAGTCCCCTGCAGCGGCC < 41bp 0.471872498477725 0.828757099086197 0.26275504 0.34492457 prediction 0.657514198172394 Functional Gain - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239040216 chr2:239040220 synonymous SNV . 0 25 hm5C_associated_SNPs_100220 0 0 0 0 0 exosome 0.500231643926493 0.500231643791514 0 0 hm5C_site_53365 DeepMRMD:0;iRNA_m5C:0 53366 chr19 49102616 49102616 1 + C A COAD 49102612 + 49102592 49102632 41 CCCAGACCCAACTCCAGCCCCAGCCCCAGCCCCGGCCAGGC CCCAGACCCAACTCCAGCCCCAGCACCAGCCCCGGCCAGGC < 41bp 0.461073639207282 0.828731096296675 0.22528839 0.29946482 prediction 0.65746219259335 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49102612 chr19:49102616 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_100221 0 0 0 0 0 exosome 0.500231643921092 0.500231643920961 0 0 hm5C_site_53366 DeepMRMD:0;iRNA_m5C:0 53367 chr17 19999983 19999983 1 + C A UCEC 19999979 + 19999959 19999999 41 TCAAGCATGCGGAGTGCAGCCAAGCCCTGGAACCCAGCCAT TCAAGCATGCGGAGTGCAGCCAAGACCTGGAACCCAGCCAT < 41bp 0.536613191905589 0.865329846026587 0.34262595 0.33599937 prediction 0.657433308241997 Functional Gain - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:19999979 chr17:19999983 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_100222 0 0 1 0 1 Cytosol 0.50023164367062 0.500231643586878 0 0 hm5C_site_53367 DeepMRMD:0;iRNA_m5C:0 53368 chr10 111967649 111967649 1 + C A rs201906236 111967645 + 111967625 111967665 41 CCGCCGCGCCCCCGGCTGTGCCCCCCGCCGTGGCCGCGCCC CCGCCGCGCCCCCGGCTGTGCCCCACGCCGTGGCCGCGCCC < 41bp 0.484437382529462 0.828705068641371 0.1323426 0.090417415 prediction 0.657410137282743 Functional Gain - MXI1 ENSG00000119950 CDS Human protein_coding chr10:111967645 chr10:111967649 nonsynonymous SNV 0.971 2 25 hm5C_associated_SNPs_100223 0 0 0 0 0 Cytosol 0.500231640068101 0.50023164392144 0 7.70667774041556e-09 hm5C_site_53368 DeepMRMD:0;iRNA_m5C:7.70667774041556e-09 53369 chr1 52246899 52246899 1 + C A SARC 52246895 + 52246875 52246915 41 GGTTGTGAAATGGTACCTCTCAGCCTTTCATGCGGGAAGGA GGTTGTGAAATGGTACCTCTCAGCATTTCATGCGGGAAGGA < 41bp 0.54773444377782 0.876433945107285 0.7575951 0.33014715 prediction 0.657399002658929 Functional Gain - OSBPL9 ENSG00000117859 CDS Human protein_coding chr1:52246895 chr1:52246899 synonymous SNV . 0 25 hm5C_associated_SNPs_100224 0 0 1 1 1 chromatin 0.500231644803384 0.500231639331764 0 0 hm5C_site_53369 DeepMRMD:0;iRNA_m5C:0 53370 chr1 248343543 248343543 1 + C A rs9435919 248343539 + 248343519 248343559 41 GTACCCAAGATGGCCTTCAACTACCTGTCTGGCAGCAAGTC GTACCCAAGATGGCCTTCAACTACATGTCTGGCAGCAAGTC < 41bp 0.537000899089738 0.865684192427152 0.08690855 0.3377173 prediction 0.657366586674827 Functional Gain - OR2M2 ENSG00000198601 CDS Human protein_coding chr1:248343539 chr1:248343543 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100225 0 0 0 0 0 exosome 0.500228481611863 0.50023220457973 0 7.44593573309693e-06 hm5C_site_53370 DeepMRMD:0;iRNA_m5C:7.44593573309693e-06 53371 chr19 58190033 58190033 1 + C A LUAD 58190029 + 58190009 58190049 41 AAAAGGCTTCTTCCAGATATCAGACCTACGGGTGCATCAGA AAAAGGCTTCTTCCAGATATCAGAACTACGGGTGCATCAGA < 41bp 0.532689646589244 0.861361303427076 0.85627955 0.88286626 prediction 0.657343313675663 Functional Gain - ZSCAN4 ENSG00000180532 CDS Human protein_coding chr19:58190029 chr19:58190033 nonsynonymous SNV 0.212 0 25 hm5C_associated_SNPs_100226 0 0 0 0 0 exosome 0.500231643500108 0.500231643378862 0.05317342 0 hm5C_site_53371 DeepMRMD:0.05317342;iRNA_m5C:0 53372 chr6 167752194 167752194 1 + C A GBM 167752190 + 167752170 167752210 41 ACATTCCATCCGAGGCAAACCACACTGAGCAGCCGCCTGCA ACATTCCATCCGAGGCAAACCACAATGAGCAGCCGCCTGCA < 41bp 0.55614477263191 0.88480627912494 0.044266313 0.08939621 prediction 0.657323012986061 Functional Gain - TTLL2 ENSG00000120440 CDS Human protein_coding chr6:167752190 chr6:167752194 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_100227 0 0 0 0 2 Exosome 0.5002546604376 0.500230915501124 0 0 hm5C_site_53372 DeepMRMD:0;iRNA_m5C:0 53373 chr7 100552728 100552728 1 + C A LUAD 100552724 + 100552704 100552744 41 CCTTACATCACGCAGGACAACTCGCATCACTTCTCAGATGA CCTTACATCACGCAGGACAACTCGAATCACTTCTCAGATGA < 41bp 0.466705793678528 0.828651255353976 0.056928635 0.4752361 prediction 0.657302510707953 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100552724 chr7:100552728 synonymous SNV . 0 25 hm5C_associated_SNPs_100228 0 0 0 0 1 exosome 0.5002316439212 0.500231643921053 0 0 hm5C_site_53373 DeepMRMD:0;iRNA_m5C:0 53374 chr18 29056145 29056145 1 + C A LUSC 29056141 + 29056121 29056161 41 CTGTCCCATTTCCAGTGTTCCTGGCAACCTAGCTGGCCCAA CTGTCCCATTTCCAGTGTTCCTGGAAACCTAGCTGGCCCAA < 41bp 0.461084006533571 0.828627442600825 0.3621604 0.7091542 prediction 0.65725488520165 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29056141 chr18:29056145 synonymous SNV . 0 25 hm5C_associated_SNPs_100229 0 0 0 0 0 Nucleus 0.500231642543299 0.500231640153583 0.4183084 0 hm5C_site_53374 DeepMRMD:0.4183084;iRNA_m5C:0 53375 chrX 150869198 150869198 1 + C A KIRC 150869194 + 150869174 150869214 41 CCAGTCGCGCCGGGCACACCCTCCCCCGGGTCATGGTGTAC CCAGTCGCGCCGGGCACACCCTCCACCGGGTCATGGTGTAC < 41bp 0.569026913575529 0.897647120058404 0.32814687 0.9428868 prediction 0.657240412965751 Functional Gain - PRRG3 ENSG00000130032 CDS Human protein_coding chrX:150869194 chrX:150869198 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_100230 0 0 0 0 0 exosome 0.500231644220569 0.500231632709262 0.8857736 0 hm5C_site_53375 DeepMRMD:0.8857736;iRNA_m5C:0 53376 chr16 1559927 1559927 1 + C A rs375348828 1559923 + 1559903 1559943 41 TCAAGAACAGGCTCCTCCCACCCGCGTCTCCCTAGTCCCTG TCAAGAACAGGCTCCTCCCACCCGAGTCTCCCTAGTCCCTG < 41bp 0.477973494854593 0.828595970215984 0.13768631 0.09489113 prediction 0.657191940431968 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1559923 chr16:1559927 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100231 0 0 1 0 1 Cytosol 0.500231640362279 0.500231479737547 0 0 hm5C_site_53376 DeepMRMD:0;iRNA_m5C:0 53377 chr4 115544771 115544771 1 + C A rs61733375 115544767 + 115544747 115544787 41 CAGCCTGTGGATGCTGTGTACTGACGTAGCACTGGAATTCC CAGCCTGTGGATGCTGTGTACTGAAGTAGCACTGGAATTCC < 41bp 0.444536555844213 0.828583783609325 0.16301957 0.23585695 prediction 0.65716756721865 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115544767 chr4:115544771 nonsynonymous SNV 0.928 3 25 hm5C_associated_SNPs_100232 0 0 1 0 1 Ribosome 0.500231642284092 0.500234381532 0 5.47849581500337e-06 hm5C_site_53377 DeepMRMD:0;iRNA_m5C:5.47849581500337e-06 53378 chr1 151238020 151238020 1 + C A UCEC 151238016 + 151237996 151238036 41 TTGGCTGGTGAAGGTGGTGCCATGCTGGGTCTTGGTGCCAG TTGGCTGGTGAAGGTGGTGCCATGATGGGTCTTGGTGCCAG < 41bp 0.457054716102773 0.828563457996046 0.07744005 0.17253941 prediction 0.657126915992093 Functional Gain - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151238016 chr1:151238020 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_100233 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53378 DeepMRMD:0;iRNA_m5C:0 53379 chr3 14798940 14798940 1 + T G LUAD 14798937 + 14798917 14798957 41 GGCCTTGCCCTCAGACTGCCCGCTGGTGCTGCGGAAGCTCA GGCCTTGCCCTCAGACTGCCCGCGGGTGCTGCGGAAGCTCA < 41bp 0.462321906551653 0.828559708893191 0.2530216 0.69888926 prediction 0.657119417786383 Functional Gain - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14798937 chr3:14798940 nonsynonymous SNV 0.948 3 24 hm5C_associated_SNPs_100234 0 0 0 0 1 nucleoplasm 0.50023164392744 0.500231643920824 0.39777852 0 hm5C_site_53379 DeepMRMD:0.39777852;iRNA_m5C:0 53380 chr16 839581 839581 1 + C A rs199581615 839577 + 839557 839597 41 GCTGCTGCCGACGTGGGTCTCACACGGGCCTCACCAGCTGC GCTGCTGCCGACGTGGGTCTCACAAGGGCCTCACCAGCTGC < 41bp 0.48204351641455 0.828559577841601 0.08555278 0.23728293 prediction 0.657119155683201 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:839577 chr16:839581 synonymous SNV . 0 25 hm5C_associated_SNPs_100235 0 0 1 0 0 Nucleus 0.500231932404781 0.500231678082548 0 0 hm5C_site_53380 DeepMRMD:0;iRNA_m5C:0 53381 chr1 27189799 27189799 1 + G T STAD 27189803 - 27189783 27189823 41 CTCTTCGCAGGAGAGCTCCTCGCCCTTCTCCACGGCGCCTT CTCTTCGCAGGAGAGCTCCTCGCCATTCTCCACGGCGCCTT < 41bp 0.480925143864738 0.828502510036367 0.69457376 0.8873275 prediction 0.657005020072734 Functional Gain - SFN ENSG00000175793 CDS Human protein_coding chr1:27189803 chr1:27189799 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_100236 0 0 0 0 0 Ribosome 0.50023171148034 0.500231643921093 0.38550748 0 hm5C_site_53381 DeepMRMD:0.38550748;iRNA_m5C:0 53382 chrX 34961596 34961596 1 + C A LUAD 34961592 + 34961572 34961612 41 GTCCAGTCGCCGCCCAGAGCCTCCCAAGACTCGGGTGTCCA GTCCAGTCGCCGCCCAGAGCCTCCAAAGACTCGGGTGTCCA < 41bp 0.424759358172918 0.828500659338667 0.14447358 0.9693876 prediction 0.657001318677335 Functional Gain - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961592 chrX:34961596 synonymous SNV . 0 25 hm5C_associated_SNPs_100237 0 0 0 0 0 unknown 0.500231643921092 0.500231643897511 0.9387752 0 hm5C_site_53382 DeepMRMD:0.9387752;iRNA_m5C:0 53383 chr1 158435435 158435435 1 + T G BRCA 158435432 + 158435412 158435452 41 GCCAGGCTGCAGCAGCTGCTCTTTGTTATCTTCCTGCTCCT GCCAGGCTGCAGCAGCTGCTCTTGGTTATCTTCCTGCTCCT < 41bp 0.478264266772965 0.828484410380012 0.041702658 0.109211 prediction 0.656968820760024 Functional Gain - OR10K1 ENSG00000173285 CDS Human protein_coding chr1:158435432 chr1:158435435 nonsynonymous SNV 0.226 3 24 hm5C_associated_SNPs_100238 0 0 0 0 0 unknown 0.50023202985651 0.500231643906621 0 0 hm5C_site_53383 DeepMRMD:0;iRNA_m5C:0 53384 chr20 57769004 57769004 1 + C A SKCM 57769000 + 57768980 57769020 41 GCAGTGGGTGGCCTGAAGAACGGGCATCATTTGTTGGGTCA GCAGTGGGTGGCCTGAAGAACGGGAATCATTTGTTGGGTCA < 41bp 0.523883950722124 0.852366787400201 0.5331174 0.857556 prediction 0.656965673356154 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57769000 chr20:57769004 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100239 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.6488772 0 hm5C_site_53384 DeepMRMD:0.6488772;iRNA_m5C:0 53385 chr1 86048693 86048693 1 + C A UCEC 86048689 + 86048669 86048709 41 GAAGCAGCGTTTCCCTTCTACAGGCTGTTCAATGACATTCA GAAGCAGCGTTTCCCTTCTACAGGATGTTCAATGACATTCA < 41bp 0.463578105050122 0.828474748337177 0.09663656 0.09254202 prediction 0.656949496674353 Functional Gain - CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048689 chr1:86048693 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100240 0 0 1 0 0 Endoplasmic reticulum 0.50023164382422 0.500226424516644 0 0 hm5C_site_53385 DeepMRMD:0;iRNA_m5C:0 53386 chr1 248366532 248366532 1 + C A HNSC 248366528 + 248366508 248366548 41 CTCCTCATCTACCTGGACACCCAGCTCCACACCCCCATGTA CTCCTCATCTACCTGGACACCCAGATCCACACCCCCATGTA < 41bp 0.483295163576579 0.828452838107672 0.03145528 0.27376252 prediction 0.656905676215343 Functional Gain - OR2M3 ENSG00000228198 CDS Human protein_coding chr1:248366528 chr1:248366532 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_100241 0 0 0 0 0 exosome 0.50023164392088 0.500231644205664 0 5.69568392450037e-10 hm5C_site_53386 DeepMRMD:0;iRNA_m5C:5.69568392450037e-10 53387 chr1 3624206 3624206 1 + C A rs145204413 3624202 + 3624182 3624222 41 ACCCCAGAGCACGCCGCCAGCGTGCCCACCCACTCGCCCTA ACCCCAGAGCACGCCGCCAGCGTGACCACCCACTCGCCCTA < 41bp 0.503856438667501 0.832287074980469 0.39879665 0.61861706 prediction 0.656861272625936 Functional Gain - TP73 ENSG00000078900 CDS Human protein_coding chr1:3624202 chr1:3624206 nonsynonymous SNV 0.916 4 25 hm5C_associated_SNPs_100242 0 0 0 0 1 chromatin 0.500231634547155 0.500231673988588 0.23723412 7.88828666831165e-08 hm5C_site_53387 DeepMRMD:0.23723412;iRNA_m5C:7.88828666831165e-08 53388 chrX 11316934 11316934 1 + C A LUAD 11316930 + 11316910 11316950 41 CCAGCCTGTTCAGCCACAGCCTCACCAGCCCATGCAGCCCC CCAGCCTGTTCAGCCACAGCCTCAACAGCCCATGCAGCCCC < 41bp 0.567456596711096 0.895883699949277 0.0075327456 0.21867716 prediction 0.656854206476362 Functional Gain - AMELX ENSG00000125363 CDS Human protein_coding chrX:11316930 chrX:11316934 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_100243 0 0 0 0 0 unknown 0.500231646713918 0.500231643926407 0 0 hm5C_site_53388 DeepMRMD:0;iRNA_m5C:0 53389 chr1 54371890 54371890 1 + C A LUSC 54371886 + 54371866 54371906 41 TGCCCTGTGGTGGTGGACACCATGCAGAACCAGAGCAGCCA TGCCCTGTGGTGGTGGACACCATGAAGAACCAGAGCAGCCA < 41bp 0.465389855787719 0.828418905567817 0.18377063 0.20994696 prediction 0.656837811135634 Functional Gain - DIO1 ENSG00000211452 CDS Human protein_coding chr1:54371886 chr1:54371890 nonsynonymous SNV 0.952 0 25 hm5C_associated_SNPs_100244 0 0 0 2 1 cytosol 0.50023164392106 0.50023164389468 0 0 hm5C_site_53389 DeepMRMD:0;iRNA_m5C:0 53390 chr2 1241762 1241762 1 + C A KIRP 1241758 + 1241738 1241778 41 CGACTGGCTGCGGGCGGTCTCAGCCAACATCAGGGAGCTGA CGACTGGCTGCGGGCGGTCTCAGCAAACATCAGGGAGCTGA < 41bp 0.542535928531911 0.870951879100964 0.29728764 0.6920093 prediction 0.656831901138108 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1241758 chr2:1241762 synonymous SNV . 0 25 hm5C_associated_SNPs_100245 0 0 0 0 1 exosome 0.500231643921093 0.500231673736407 0.3840186 5.9630628435059e-08 hm5C_site_53390 DeepMRMD:0.3840186;iRNA_m5C:5.9630628435059e-08 53391 chr6 100061079 100061079 1 + C A LUAD 100061075 + 100061055 100061095 41 GTCCCAGCGGCTGATGGCCTCGGTCTCTCCCCAAAACCCCC GTCCCAGCGGCTGATGGCCTCGGTATCTCCCCAAAACCCCC < 41bp 0.473654049254703 0.82839527234167 0.28047496 0.4042127 prediction 0.65679054468334 Functional Gain - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100061075 chr6:100061079 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_100246 0 0 0 0 0 exosome 0.500231643903236 0.500231643920411 0 3.43496342480876e-11 hm5C_site_53391 DeepMRMD:0;iRNA_m5C:3.43496342480876e-11 53392 chr19 5455761 5455761 1 + C A LUAD 5455757 + 5455737 5455777 41 GCCCTCGTGGCAGTCAAAGCCTTGCTGGTCTTGTCGCTGCT GCCCTCGTGGCAGTCAAAGCCTTGATGGTCTTGTCGCTGCT < 41bp 0.479474629089759 0.828372655479286 0.21650973 0.32622594 prediction 0.656745310958573 Functional Gain - ZNRF4 ENSG00000105428 CDS Human protein_coding chr19:5455757 chr19:5455761 nonsynonymous SNV 0.017 2 25 hm5C_associated_SNPs_100247 0 0 0 0 0 unknown 0.500231658519449 0.500231758394679 0 1.99750460838644e-07 hm5C_site_53392 DeepMRMD:0;iRNA_m5C:1.99750460838644e-07 53393 chr22 37333924 37333924 1 + C A UCEC 37333920 + 37333900 37333940 41 GGAGGACAGGACCAAAAGGACAGCCCTGTGGCTATACCCAT GGAGGACAGGACCAAAAGGACAGCACTGTGGCTATACCCAT < 41bp 0.461304320078863 0.828339624594901 0.08111453 0.1281642 prediction 0.656679249189802 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37333920 chr22:37333924 nonsynonymous SNV 0.014 3 25 hm5C_associated_SNPs_100248 0 0 0 0 0 Endoplasmic reticulum 0.500231643922215 0.500231643921093 0 0 hm5C_site_53393 DeepMRMD:0;iRNA_m5C:0 53394 chr1 12853534 12853534 1 + C A rs267597970 12853530 + 12853510 12853550 41 GCAGGAGACACTTCCAGACTCTGACGGTGATGGTTCAGGCC GCAGGAGACACTTCCAGACTCTGAAGGTGATGGTTCAGGCC < 41bp 0.553532371420727 0.881813059621971 0.078743726 0.14863464 prediction 0.656561376402488 Functional Gain - PRAMEF1 ENSG00000116721 CDS Human protein_coding chr1:12853530 chr1:12853534 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100249 0 0 0 0 0 unknown 0.500231644037355 0.50023164646574 0 4.85676987516115e-09 hm5C_site_53394 DeepMRMD:0;iRNA_m5C:4.85676987516115e-09 53395 chrX 153608120 153608120 1 + C A rs782051850 153608116 + 153608096 153608136 41 CCAGAGGCGGCGGCTCTCGCCCCCCAGCTCGTCCGCCGCCT CCAGAGGCGGCGGCTCTCGCCCCCAAGCTCGTCCGCCGCCT < 41bp 0.426772454740811 0.828264707537309 0.07372445 0.22168753 prediction 0.656529415074617 Functional Gain - EMD ENSG00000102119 CDS Human protein_coding chrX:153608116 chrX:153608120 synonymous SNV . 0 25 hm5C_associated_SNPs_100250 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53395 DeepMRMD:0;iRNA_m5C:0 53396 chr6 130762799 130762799 1 + C A LUSC 130762795 + 130762775 130762815 41 GTCCCTCCACTCTAACTGTTCAGGCAGAACAACGGAAACAT GTCCCTCCACTCTAACTGTTCAGGAAGAACAACGGAAACAT < 41bp 0.525337671584072 0.853598776679753 0.75314677 0.8469612 prediction 0.656522210191361 Functional Gain - TMEM200A ENSG00000164484 CDS Human protein_coding chr6:130762795 chr6:130762799 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_100251 0 0 0 0 0 exosome 0.500231643921094 0.500231643922642 0.18762886 3.09530179265494e-12 hm5C_site_53396 DeepMRMD:0.18762886;iRNA_m5C:3.09530179265494e-12 53397 chr1 206224515 206224515 1 + C A LUSC 206224511 + 206224491 206224531 41 CTCTGCCCCCAATGCCACAACACCCTGGCTGGGCCGGGATG CTCTGCCCCCAATGCCACAACACCATGGCTGGGCCGGGATG < 41bp 0.45082678104896 0.828254225155816 0.21975833 0.25155938 prediction 0.656508450311633 Functional Gain - AVPR1B ENSG00000198049 CDS Human protein_coding chr1:206224511 chr1:206224515 synonymous SNV . 0 25 hm5C_associated_SNPs_100252 0 0 0 0 0 unknown 0.500231643921092 0.500231643921101 0 1.64313007644523e-14 hm5C_site_53397 DeepMRMD:0;iRNA_m5C:1.64313007644523e-14 53398 chr17 61939715 61939715 1 + C A CESC 61939711 + 61939691 61939731 41 CCTGGCTGGAAGGGATGGAACACACGCTCGCCTGCGTCCCA CCTGGCTGGAAGGGATGGAACACAAGCTCGCCTGCGTCCCA < 41bp 0.484837122432073 0.828251966950753 0.024564356 0.120816976 prediction 0.656503933901505 Functional Gain - TCAM1P ENSG00000240280 ncRNA_exonic Human transcribed_unitary_pseudogene chr17:61939711 chr17:61939715 . . 0 25 hm5C_associated_SNPs_100253 0 0 0 0 1 unknown 0.500231643921394 0.500231668995355 0 5.01479213710354e-08 hm5C_site_53398 DeepMRMD:0;iRNA_m5C:5.01479213710354e-08 53399 chr10 74660187 74660187 1 + C A rs146090082 74660183 + 74660163 74660203 41 CCATGGCAGCTGCTCAGATACCAGCGAGTGCACATGCGCTC CCATGGCAGCTGCTCAGATACCAGAGAGTGCACATGCGCTC < 41bp 0.441651686747812 0.828240294377815 0.41552195 0.66527563 prediction 0.656480588755631 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74660183 chr10:74660187 nonsynonymous SNV 0.130 1 25 hm5C_associated_SNPs_100254 0 0 0 0 2 Cytosol 0.50022522631132 0.500204057600565 0.33055126 0 hm5C_site_53399 DeepMRMD:0.33055126;iRNA_m5C:0 53400 chr2 36994315 36994315 1 + C A PAAD 36994311 + 36994291 36994331 41 CGGTCACTCTGATGCAGCTTCTGGCTGTCACTGTAGCTGTG CGGTCACTCTGATGCAGCTTCTGGATGTCACTGTAGCTGTG < 41bp 0.547811976445885 0.876004768898349 0.07334295 0.20243195 prediction 0.656385584904927 Functional Gain - VIT ENSG00000205221 CDS Human protein_coding chr2:36994311 chr2:36994315 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100255 0 0 0 0 1 Nucleus 0.500277360344527 0.500256175446904 0 0 hm5C_site_53400 DeepMRMD:0;iRNA_m5C:0 53401 chr19 35504178 35504178 1 + C A SARC 35504174 + 35504154 35504194 41 CCCCAGACGCTGAGTCCCCGCGAGCTCTGGCACCTGGTGCA CCCCAGACGCTGAGTCCCCGCGAGATCTGGCACCTGGTGCA < 41bp 0.471333616691175 0.828177659522337 0.71288633 0.90514076 prediction 0.656355319044674 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35504174 chr19:35504178 nonsynonymous SNV 0.979 3 25 hm5C_associated_SNPs_100256 0 0 1 0 2 Endoplasmic reticulum 0.500231667998684 0.500231644125625 0.38450886 0 hm5C_site_53401 DeepMRMD:0.38450886;iRNA_m5C:0 53402 chr17 7983572 7983572 1 + G T STAD 7983576 - 7983556 7983596 41 GGACATTAGGAAAATTTTCCCTGGCAAGAAATCTGTCGTCT GGACATTAGGAAAATTTTCCCTGGAAAGAAATCTGTCGTCT < 41bp 0.556414559697765 0.884591672598931 0.14222673 0.23017734 prediction 0.656354225802332 Functional Gain - ALOX12B ENSG00000179477;ENSG00000214999 CDS Human other chr17:7983576 chr17:7983572 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_100257 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53402 DeepMRMD:0;iRNA_m5C:0 53403 chr22 19484966 19484966 1 + C A LGG 19484962 + 19484942 19484982 41 CTGTCCAAGGACCTGAATGACATGCTGTGGTACGTAGCCCC CTGTCCAAGGACCTGAATGACATGATGTGGTACGTAGCCCC < 41bp 0.445191641253092 0.828139248309622 0.3361451 0.23925325 prediction 0.656278496619244 Functional Gain - CDC45 ENSG00000093009 CDS Human protein_coding chr22:19484962 chr22:19484966 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_100258 0 0 1 0 2 Ribosome 0.500231644609878 0.500229469264756 0 0 hm5C_site_53403 DeepMRMD:0;iRNA_m5C:0 53404 chr11 64335111 64335111 1 + C A HNSC 64335107 + 64335087 64335127 41 TCCTACTATGGGCTGGTCTTCGACCTGCAGAGCCTGGGCCG TCCTACTATGGGCTGGTCTTCGACATGCAGAGCCTGGGCCG < 41bp 0.539412771775065 0.867523846836906 0.53588855 0.4948774 prediction 0.656222150123681 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64335107 chr11:64335111 nonsynonymous SNV 0.049 3 25 hm5C_associated_SNPs_100259 0 0 0 0 1 nucleoplasm 0.500231643921085 0.500231643921092 0 1.48769885299771e-14 hm5C_site_53404 DeepMRMD:0;iRNA_m5C:1.48769885299771e-14 53405 chr12 110032905 110032905 1 + C A LIHC 110032901 + 110032881 110032921 41 CACGCCTCTCTGGACCAGCTCTGCCAGGTGACCAGGGCCCG CACGCCTCTCTGGACCAGCTCTGCAAGGTGACCAGGGCCCG < 41bp 0.433057354906495 0.828108129721972 0.056435287 0.18942627 prediction 0.656216259443945 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110032901 chr12:110032905 nonsynonymous SNV 0.983 2 25 hm5C_associated_SNPs_100260 0 0 1 0 1 Ribosome 0.500231643923829 0.500231643921103 0 0 hm5C_site_53405 DeepMRMD:0;iRNA_m5C:0 53406 chr10 46999131 46999131 1 + C A LGG 46999127 + 46999107 46999147 41 GGGCCTCTGGCCCCAAGGCGCGACCCAGTGCTGGAGGCCAC GGGCCTCTGGCCCCAAGGCGCGACACAGTGCTGGAGGCCAC < 41bp 0.466140941096232 0.828104106579112 0.57599425 0.6879514 prediction 0.656208213158225 Functional Gain - GPRIN2 ENSG00000204175 CDS Human protein_coding chr10:46999127 chr10:46999131 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_100261 0 0 0 0 0 exosome 0.500231643921709 0.500231644033702 0.2239143 2.23985940905891e-10 hm5C_site_53406 DeepMRMD:0.2239143;iRNA_m5C:2.23985940905891e-10 53407 chr19 56561817 56561817 1 + T G OV 56561814 + 56561794 56561834 41 TGCCACCTGGACACGGCTGGCTGTGGTTTTCTTGCACTTGC TGCCACCTGGACACGGCTGGCTGGGGTTTTCTTGCACTTGC < 41bp 0.457501415990167 0.828068791733836 0.399679 0.9053492 prediction 0.656137583467673 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56561814 chr19:56561817 nonsynonymous SNV 0.009 2 24 hm5C_associated_SNPs_100262 0 0 0 0 1 unknown 0.500231643921092 0.500231643920479 0.8106984 0 hm5C_site_53407 DeepMRMD:0.8106984;iRNA_m5C:0 53408 chr17 45822226 45822226 1 + C A COAD 45822222 + 45822202 45822242 41 CCCAACCAGTATCCTGTTCCCAGCCGCTTCTACCCCGACCT CCCAACCAGTATCCTGTTCCCAGCAGCTTCTACCCCGACCT < 41bp 0.543947649026245 0.872007189665352 0.36016446 0.4626514 prediction 0.656119081278214 Functional Gain - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45822222 chr17:45822226 nonsynonymous SNV 0.979 2 25 hm5C_associated_SNPs_100263 0 0 0 0 0 exosome 0.500231643921092 0.500227170617038 0 0 hm5C_site_53408 DeepMRMD:0;iRNA_m5C:0 53409 chr11 6891795 6891795 1 + C A LUAD 6891791 + 6891771 6891811 41 ATTGTCCTACACTGTTATGACTCCCATGTTGAACCCCATTA ATTGTCCTACACTGTTATGACTCCAATGTTGAACCCCATTA < 41bp 0.447949059613723 0.828055148746217 0.025558442 0.9658277 prediction 0.656110297492435 Functional Gain - OR10A2 ENSG00000170790 CDS Human protein_coding chr11:6891791 chr11:6891795 synonymous SNV . 0 25 hm5C_associated_SNPs_100264 0 0 0 0 0 unknown 0.500231211055881 0.500231643921093 0.9316554 8.65730423793565e-07 hm5C_site_53409 DeepMRMD:0.9316554;iRNA_m5C:8.65730423793565e-07 53410 chr3 169500324 169500324 1 + C A OV 169500320 + 169500300 169500340 41 GATTTGCTCAAGCCAGCACACTGACCTATCATGTCCGTAGG GATTTGCTCAAGCCAGCACACTGAACTATCATGTCCGTAGG < 41bp 0.451032179144745 0.828033951188144 0.055426776 0.09265208 prediction 0.656067902376289 Functional Gain - MYNN ENSG00000085274 CDS Human protein_coding chr3:169500320 chr3:169500324 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100265 0 0 0 2 1 Nucleus 0.500210649751631 0.500231643921093 0 4.19883389231046e-05 hm5C_site_53410 DeepMRMD:0;iRNA_m5C:4.19883389231046e-05 53411 chr14 31355170 31355170 1 + A C DLBC 31355173 - 31355153 31355193 41 GCGGAAATTGCTATCTCCAACACTGCTGGAGCCATCAATTA GCGGAAATTGCTATCTCCAACACGGCTGGAGCCATCAATTA < 41bp 0.480738086577527 0.82803310851987 0.007024437 0.0075594783 prediction 0.656066217039741 Functional Gain - COCH ENSG00000100473 CDS Human protein_coding chr14:31355173 chr14:31355170 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_100266 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_53411 DeepMRMD:0;iRNA_m5C:0 53412 chr11 5602834 5602834 1 + C A HNSC 5602830 + 5602810 5602850 41 TTTCCTACATCCACATCCTCCAAGCAGTCTTCCGCCTCCTT TTTCCTACATCCACATCCTCCAAGAAGTCTTCCGCCTCCTT < 41bp 0.487453219440823 0.828018572486036 0.07634762 0.10401696 prediction 0.656037144972072 Functional Gain - OR52B6 ENSG00000187747 CDS Human protein_coding chr11:5602830 chr11:5602834 nonsynonymous SNV 0.037 1 25 hm5C_associated_SNPs_100267 0 0 0 0 0 unknown 0.500231643921326 0.500231643921092 0 0 hm5C_site_53412 DeepMRMD:0;iRNA_m5C:0 53413 chr16 8722946 8722946 1 + C A STAD 8722942 + 8722922 8722962 41 CTGGGAGAGGAAGCACAAGGCAGCCCGCACGATATCATCAG CTGGGAGAGGAAGCACAAGGCAGCACGCACGATATCATCAG < 41bp 0.452264746277519 0.828004320623139 0.36485997 0.37871554 prediction 0.656008641246279 Functional Gain - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8722942 chr16:8722946 nonsynonymous SNV 0.026 0 25 hm5C_associated_SNPs_100268 0 0 1 0 1 Cytosol 0.500231643921093 0.500231643922177 0 2.16915374551263e-12 hm5C_site_53413 DeepMRMD:0;iRNA_m5C:2.16915374551263e-12 53414 chr17 43226810 43226810 1 + C A UCEC 43226806 + 43226786 43226826 41 CAGGCCTGTCCAGAATCTAGCTGCCTGAGAGAGGGCGAGAA CAGGCCTGTCCAGAATCTAGCTGCATGAGAGAGGGCGAGAA < 41bp 0.456836778865838 0.828003892426701 0.4906318 0.5471583 prediction 0.656007784853403 Functional Gain - HEXIM1 ENSG00000186834 CDS Human protein_coding chr17:43226806 chr17:43226810 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_100269 0 0 1 0 0 Ribosome 0.500231643921092 0.500231644512997 0.0943166 1.18380949487573e-09 hm5C_site_53414 DeepMRMD:0.0943166;iRNA_m5C:1.18380949487573e-09 53415 chr1 22816684 22816684 1 + C A UCEC 22816680 + 22816660 22816700 41 CTTGTTGGAAATGATGTACACGGGCAAACTACCTGTGGGCA CTTGTTGGAAATGATGTACACGGGAAAACTACCTGTGGGCA < 41bp 0.459665040746949 0.827999304941332 0.41805273 0.62856734 prediction 0.655998609882665 Functional Gain - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22816680 chr1:22816684 synonymous SNV . 0 25 hm5C_associated_SNPs_100270 0 0 1 0 0 Nucleus 0.500231643933687 0.500231643921101 0.25713468 0 hm5C_site_53415 DeepMRMD:0.25713468;iRNA_m5C:0 53416 chr7 12610641 12610641 1 + C A rs80240327 12610637 + 12610617 12610657 41 GGACGGCGGGCGGCGGGACCCCGACGCACCAAGGCCGGCGA GGACGGCGGGCGGCGGGACCCCGAAGCACCAAGGCCGGCGA < 41bp 0.505571583281457 0.833529444661529 0.38285184 0.6647027 prediction 0.655915722760144 Functional Gain - SCIN ENSG00000225606 ncRNA_intronic Human antisense chr7:12610637 chr7:12610641 . . 0 25 hm5C_associated_SNPs_100271 0 0 0 0 0 nucleolus 0.500231645122968 0.500231658495842 0.3294054 2.67457480607192e-08 hm5C_site_53416 DeepMRMD:0.3294054;iRNA_m5C:2.67457480607192e-08 53417 chr15 39881465 39881465 1 + C A LUSC 39881461 + 39881441 39881481 41 AGAGCACCGGTGTGAGAACACGGACCCCGGCTACAACTGCC AGAGCACCGGTGTGAGAACACGGAACCCGGCTACAACTGCC < 41bp 0.445600411965109 0.827930632009716 0.36688417 0.40463394 prediction 0.655861264019433 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39881461 chr15:39881465 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_100272 0 0 1 0 2 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_53417 DeepMRMD:0;iRNA_m5C:0 53418 chr2 232458482 232458482 1 + C A rs150621017 232458478 + 232458458 232458498 41 GCCAGTGAGGAGAACAGCTACATGCGCTCCATGACCAGCCT GCCAGTGAGGAGAACAGCTACATGAGCTCCATGACCAGCCT < 41bp 0.461797210425344 0.827930364921862 0.27103752 0.36931878 prediction 0.655860729843724 Functional Gain - TEX44 ENSG00000177673 CDS Human protein_coding chr2:232458478 chr2:232458482 nonsynonymous SNV 0.411 1 25 hm5C_associated_SNPs_100273 0 0 0 0 0 unknown 0.500232106205416 0.500231644359788 0 0 hm5C_site_53418 DeepMRMD:0;iRNA_m5C:0 53419 chr12 113376452 113376452 1 + C A rs1859329 113376448 + 113376428 113376468 41 CGCTCTGGGCGCCCTGGCCGCTGCCCTGAGGGAGCGCGGGG CGCTCTGGGCGCCCTGGCCGCTGCACTGAGGGAGCGCGGGG < 41bp 0.474826012553155 0.827866788711764 0.2616979 0.41062722 prediction 0.655733577423529 Functional Gain - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113376448 chr12:113376452 synonymous SNV . 0 25 hm5C_associated_SNPs_100274 0 0 1 0 1 Nucleus 0.500231643508349 0.500231643920149 0 8.23599188848334e-10 hm5C_site_53419 DeepMRMD:0;iRNA_m5C:8.23599188848334e-10 53420 chr16 30096088 30096088 1 + C A COAD 30096084 + 30096064 30096104 41 GCCAATGACATTGACATGATCTGCCGTGCCCACCAACTGGT GCCAATGACATTGACATGATCTGCAGTGCCCACCAACTGGT < 41bp 0.559948517586833 0.887804698584584 0.14233506 0.2853154 prediction 0.655712361995503 Functional Gain - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096084 chr16:30096088 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_100275 0 0 1 0 1 Ribosome 0.50023164087769 0.500236985653402 0 1.06895514229155e-05 hm5C_site_53420 DeepMRMD:0;iRNA_m5C:1.06895514229155e-05 53421 chr10 71025536 71025536 1 + T G rs143913672 71025533 + 71025513 71025553 41 GGGCTAGAGCACCTGAGGATCACTGTGGGTGTGGACGGCAC GGGCTAGAGCACCTGAGGATCACGGTGGGTGTGGACGGCAC < 41bp 0.53864630800822 0.866458572175133 0.21017915 0.45843884 prediction 0.655624528333826 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71025533 chr10:71025536 synonymous SNV . 0 24 hm5C_associated_SNPs_100276 0 0 0 0 1 Cytosol 0.500231873634197 0.500231643921181 0 0 hm5C_site_53421 DeepMRMD:0;iRNA_m5C:0 53422 chr7 128509383 128509383 1 + C A rs3736608 128509379 + 128509359 128509399 41 AGCACCTGGCACACCTGCCCCTCGCGCCCCGCCGAGTCACT AGCACCTGGCACACCTGCCCCTCGAGCCCCGCCGAGTCACT < 41bp 0.520487111983187 0.848282907708435 0.07080594 0.4267676 prediction 0.655591591450496 Functional Gain - LOC100130705 ENSG00000135253 ncRNA_intronic Human protein_coding chr7:128509379 chr7:128509383 . . 0 25 hm5C_associated_SNPs_100277 0 0 0 0 0 unknown 0.50023164392989 0.500232133476415 0 9.79093050412772e-07 hm5C_site_53422 DeepMRMD:0;iRNA_m5C:9.79093050412772e-07 53423 chr11 57798830 57798830 1 + T G PRAD 57798827 + 57798807 57798847 41 TGGCCATTTGTATGCCTCTCCACTATGGGGCTTTTGTGTCC TGGCCATTTGTATGCCTCTCCACGATGGGGCTTTTGTGTCC < 41bp 0.481380609275239 0.827791646310006 0.045002997 0.11421496 prediction 0.655583292620011 Functional Gain - OR6Q1 ENSG00000172381 CDS Human other chr11:57798827 chr11:57798830 nonsynonymous SNV 0.826 3 24 hm5C_associated_SNPs_100278 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_53423 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 53424 chr11 120837934 120837934 1 + C A ESCA 120837930 + 120837910 120837950 41 TTTTCCGGGACGAGTTTGATCTGGCCATTCTCCAGCTGCAG TTTTCCGGGACGAGTTTGATCTGGACATTCTCCAGCTGCAG < 41bp 0.47077465291221 0.827754162193246 0.84692574 0.48842278 prediction 0.655508324386492 Functional Gain - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120837930 chr11:120837934 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100279 0 0 0 0 2 membrane 0.500231643921086 0.500231643488888 0 0 hm5C_site_53424 DeepMRMD:0;iRNA_m5C:0 53425 chr9 1056920 1056920 1 + C A UCEC 1056916 + 1056896 1056936 41 TCTCCCATTGTTGACACGGACTCCCTGGCAGCTCAAGGGCA TCTCCCATTGTTGACACGGACTCCATGGCAGCTCAAGGGCA < 41bp 0.450749568842587 0.827726297166964 0.09003562 0.94314086 prediction 0.655452594333928 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056916 chr9:1056920 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_100280 0 0 0 2 0 Cytosol 0.500231643922376 0.50023165819922 0.88628172 2.85536876365455e-08 hm5C_site_53425 DeepMRMD:0.88628172;iRNA_m5C:2.85536876365455e-08 53426 chr16 107275 107275 1 + T G rs1045001 107272 + 107252 107292 41 CTCACCCCAGGCATGCCCAACAGTAACTGTCAGCATAAACC CTCACCCCAGGCATGCCCAACAGGAACTGTCAGCATAAACC < 41bp 0.488833912630212 0.827719121083494 0.08852413 0.6504049 prediction 0.655438242166988 Functional Gain - SNRNP25 ENSG00000161981 UTR3 Human protein_coding chr16:107272 chr16:107275 . . 0 24 hm5C_associated_SNPs_100281 0 0 1 0 0 Ribosome 0.500231647005458 0.500231643896492 0.3008098 0 hm5C_site_53426 DeepMRMD:0.3008098;iRNA_m5C:0 53427 chr9 72472843 72472843 1 + C A COAD 72472839 + 72472819 72472859 41 TTTTAGGGTCACCGGATTGCCTGCCACAGGTTTTGGAGCTG TTTTAGGGTCACCGGATTGCCTGCAACAGGTTTTGGAGCTG < 41bp 0.562366354288637 0.890076657349726 0.025546432 0.29590976 prediction 0.655420606122178 Functional Gain - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72472839 chr9:72472843 synonymous SNV . 0 25 hm5C_associated_SNPs_100282 0 0 0 0 1 nucleoplasm 0.50023164391677 0.5002323778498 0 1.46786605847993e-06 hm5C_site_53427 DeepMRMD:0;iRNA_m5C:1.46786605847993e-06 53428 chr5 81608566 81608566 1 + C A rs560139469 81608562 + 81608542 81608582 41 TATGCTCCCTCTGGTTACTCCTACCGCTGCCAACGCGTGGG TATGCTCCCTCTGGTTACTCCTACAGCTGCCAACGCGTGGG < 41bp 0.424568377031197 0.82767512908908 0.26511234 0.6252091 prediction 0.655350258178159 Functional Gain - ATP6AP1L ENSG00000205464 CDS Human protein_coding chr5:81608562 chr5:81608566 nonsynonymous SNV 0.932 2 25 hm5C_associated_SNPs_100283 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921083 0.2504182 0 hm5C_site_53428 DeepMRMD:0.2504182;iRNA_m5C:0 53429 chr19 14139032 14139032 1 + C A LUSC 14139028 + 14139008 14139048 41 CCGTCCAGCATGGCCAGGTACATGCTGCTGCTGCTCCTGGC CCGTCCAGCATGGCCAGGTACATGATGCTGCTGCTCCTGGC < 41bp 0.508325684276263 0.835993536749614 0.26674998 0.2978052 prediction 0.655335704946702 Functional Gain - RLN3 ENSG00000171136 CDS Human protein_coding chr19:14139028 chr19:14139032 nonsynonymous SNV 0.139 0 25 hm5C_associated_SNPs_100284 0 0 0 0 0 exosome 0.500231453109239 0.500231643920738 0 3.81622999201525e-07 hm5C_site_53429 DeepMRMD:0;iRNA_m5C:3.81622999201525e-07 53430 chr19 847965 847965 1 + C A COAD 847961 + 847941 847981 41 GCCGTGTGGAGGCCAAGGGCCGCCCCTGAACCGCCCCTCCC GCCGTGTGGAGGCCAAGGGCCGCCACTGAACCGCCCCTCCC < 41bp 0.535884663963916 0.86350295523878 0.10884994 0.21354264 prediction 0.655236582549728 Functional Gain - PRTN3 ENSG00000196415 CDS Human protein_coding chr19:847961 chr19:847965 nonsynonymous SNV 0.000 4 25 hm5C_associated_SNPs_100285 0 0 0 0 0 exosome 0.500284762867672 0.500231643912302 0 0 hm5C_site_53430 DeepMRMD:0;iRNA_m5C:0 53431 chrX 153418558 153418558 1 + C A LUAD 153418554 + 153418534 153418574 41 GATCTGGTCTGCTGTGTGGACAGCCCCGCCCATCTTTGGTT GATCTGGTCTGCTGTGTGGACAGCACCGCCCATCTTTGGTT < 41bp 0.440290677330984 0.827589421129152 0.26407856 0.20594046 prediction 0.655178842258303 Functional Gain - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153418554 chrX:153418558 synonymous SNV . 0 25 hm5C_associated_SNPs_100286 0 0 0 0 1 unknown 0.500231642284893 0.500231643920574 0 3.27136095989999e-09 hm5C_site_53431 DeepMRMD:0;iRNA_m5C:3.27136095989999e-09 53432 chr13 107029338 107029338 1 + C A rs138340888 107029334 + 107029314 107029354 41 CCCTGGATGAACCACCATTGCCAGCGGGGAGCATGTTGCAG CCCTGGATGAACCACCATTGCCAGAGGGGAGCATGTTGCAG < 41bp 0.503682300035628 0.8312386088341 0.77357185 0.9065391 prediction 0.655112617596943 Functional Gain - LINC00460 ENSG00000233532 ncRNA_exonic Human lincRNA chr13:107029334 chr13:107029338 . . 0 25 hm5C_associated_SNPs_100287 0 0 0 2 1 unknown 0.500230520957517 0.500231363614576 0.2659345 1.68531411914863e-06 hm5C_site_53432 DeepMRMD:0.2659345;iRNA_m5C:1.68531411914863e-06 53433 chr21 15013702 15013702 1 + C A LUAD 15013698 + 15013678 15013718 41 CATAAGAAAGAAGAAGATCTCTTGCGTGAAAACAGCGTGTT CATAAGAAAGAAGAAGATCTCTTGAGTGAAAACAGCGTGTT < 41bp 0.470651096923614 0.82751447378107 0.1729298 0.29475668 prediction 0.655028947562139 Functional Gain - POTED ENSG00000166351 CDS Human protein_coding chr21:15013698 chr21:15013702 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_100288 0 0 0 0 1 exosome 0.500231637368471 0.500231642670314 0 1.06036874836235e-08 hm5C_site_53433 DeepMRMD:0;iRNA_m5C:1.06036874836235e-08 53434 chr1 47501792 47501792 1 + C A rs199790231 47501788 + 47501768 47501808 41 AGTGACATAATTTTCAAACTCAGCCCTCAGGGCTACCGCTT AGTGACATAATTTTCAAACTCAGCACTCAGGGCTACCGCTT < 41bp 0.438113713854633 0.827466750946267 0.018552125 0.022048831 prediction 0.654933501892534 Functional Gain - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47501788 chr1:47501792 nonsynonymous SNV 0.404 2 25 hm5C_associated_SNPs_100289 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643895368 0 0 hm5C_site_53434 DeepMRMD:0;iRNA_m5C:0 53435 chr7 128843398 128843398 1 + T G STAD 128843395 + 128843375 128843415 41 GGGGCTGGCCTGACTTCCTGCGCTGCACTCCTGACCGCTTC GGGGCTGGCCTGACTTCCTGCGCGGCACTCCTGACCGCTTC < 41bp 0.459574295363851 0.827426802110068 0.17766866 0.35730958 prediction 0.654853604220136 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128843395 chr7:128843398 nonsynonymous SNV 0.994 5 24 hm5C_associated_SNPs_100290 0 0 1 0 1 cytosol 0.500231643900555 0.500231643495253 0 0 hm5C_site_53435 DeepMRMD:0;iRNA_m5C:0 53436 chr2 234741833 234741833 1 + C A COAD 234741829 + 234741809 234741849 41 GGATCCCGGGGTCAGGAGGGCAGCCCTGGAGACGCTCACAG GGATCCCGGGGTCAGGAGGGCAGCACTGGAGACGCTCACAG < 41bp 0.473729318488925 0.827421183432721 0.7161 0.7210292 prediction 0.654842366865443 Functional Gain - MROH2A ENSG00000185038 CDS Human protein_coding chr2:234741829 chr2:234741833 synonymous SNV . 0 25 hm5C_associated_SNPs_100291 0 0 0 0 1 exosome 0.500225252739692 0.500231643921077 0.00985840000000016 1.27823627695811e-05 hm5C_site_53436 DeepMRMD:0.00985840000000016;iRNA_m5C:1.27823627695811e-05 53437 chr5 140531039 140531039 1 + C A COAD 140531035 + 140531015 140531055 41 CCTTCCGTGGAGAATTTCTACACCCTGGTAACAGAAGGCGC CCTTCCGTGGAGAATTTCTACACCATGGTAACAGAAGGCGC < 41bp 0.453021642984137 0.827414710736846 0.06800398 0.03429866 prediction 0.654829421473691 Functional Gain - PCDHB6 ENSG00000113211 CDS Human protein_coding chr5:140531035 chr5:140531039 nonsynonymous SNV 0.097 2 25 hm5C_associated_SNPs_100292 0 0 0 0 0 exosome 0.500231643921099 0.500231646107353 0 4.37250768925423e-09 hm5C_site_53437 DeepMRMD:0;iRNA_m5C:4.37250768925423e-09 53438 chr15 45694610 45694610 1 + C A rs1365610 45694606 + 45694586 45694626 41 GTTTCCTAATCTGGTTTCGTCTGCCTGGTTCATCTGTGTGC GTTTCCTAATCTGGTTTCGTCTGCATGGTTCATCTGTGTGC < 41bp 0.506457375364173 0.833865221723651 0.22044939 0.4305248 prediction 0.654815692718955 Functional Gain - SPATA5L1 ENSG00000171763 UTR5 Human protein_coding chr15:45694606 chr15:45694610 . . 0 25 hm5C_associated_SNPs_100293 0 0 1 0 0 chromatin 0.500231643921092 0.500231643750999 0 0 hm5C_site_53438 DeepMRMD:0;iRNA_m5C:0 53439 chr10 114911626 114911626 1 + C A LUSC 114911622 + 114911602 114911642 41 TTGAAAGAAAGCGCGGCCATCAACCAGATCCTTGGGCGGAG TTGAAAGAAAGCGCGGCCATCAACAAGATCCTTGGGCGGAG < 41bp 0.503117991881356 0.830513558794902 0.1293867 0.19914794 prediction 0.654791133827092 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114911622 chr10:114911626 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100294 0 0 0 0 0 Nucleus 0.500231643921092 0.50023164392107 0 0 hm5C_site_53439 DeepMRMD:0;iRNA_m5C:0 53440 chr15 90119120 90119120 1 + C A rs200014273 90119116 + 90119096 90119136 41 GGCGCCCAGGGCCACCCACACGCACGGCGCCCTGATGGAGA GGCGCCCAGGGCCACCCACACGCAAGGCGCCCTGATGGAGA < 41bp 0.454339752894253 0.827378116479198 0.17265487 0.22371393 prediction 0.654756232958395 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90119116 chr15:90119120 nonsynonymous SNV 0.975 0 25 hm5C_associated_SNPs_100295 0 0 1 0 0 chromatin 0.500231643923857 0.500231643921085 0 0 hm5C_site_53440 DeepMRMD:0;iRNA_m5C:0 53441 chr19 47844849 47844849 1 + C A LUAD 47844845 + 47844825 47844865 41 ACTGTGGCGGCCCCGAACTCCGCACTCCTGGCCAGGGCCCT ACTGTGGCGGCCCCGAACTCCGCAATCCTGGCCAGGGCCCT < 41bp 0.542361696371292 0.869733680519647 0.52605075 0.65569925 prediction 0.65474396829671 Functional Gain - C5AR2 ENSG00000134830 CDS Human protein_coding chr19:47844845 chr19:47844849 nonsynonymous SNV 0.365 0 25 hm5C_associated_SNPs_100296 0 0 0 0 0 exosome 0.50023164392117 0.500231643921092 0.259297 0 hm5C_site_53441 DeepMRMD:0.259297;iRNA_m5C:0 53442 chr10 134942698 134942698 1 + C A rs150943550 134942694 + 134942674 134942714 41 CCCCGCAGCTCGCGCACAGACAGCCCCCCCAGCTCTCTGGA CCCCGCAGCTCGCGCACAGACAGCACCCCCAGCTCTCTGGA < 41bp 0.448942820081964 0.82736580611088 0.21312687 0.069873214 prediction 0.654731612221759 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134942694 chr10:134942698 nonsynonymous SNV 0.920 1 25 hm5C_associated_SNPs_100297 0 0 0 0 0 Nucleus 0.500231643921204 0.500231643921092 0 0 hm5C_site_53442 DeepMRMD:0;iRNA_m5C:0 53443 chr11 124056413 124056413 1 + T G rs558938983 124056410 + 124056390 124056430 41 AAGGATCTGTGTGGCCCTGGCTGTGGGCACATGGCTGTTAG AAGGATCTGTGTGGCCCTGGCTGGGGGCACATGGCTGTTAG < 41bp 0.530429099569226 0.857780567286238 0.08419481 0.7057122 prediction 0.654702935434023 Functional Gain - VWA5A;OR8G2P ENSG00000197309 CDS Human protein_coding chr11:124056410 chr11:124056413 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_100298 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.4114244 0 hm5C_site_53443 DeepMRMD:0.4114244;iRNA_m5C:0 53444 chr12 91341897 91341897 1 + C A rs539925792 91341893 + 91341873 91341913 41 TACTCTAGGATGACTGATTCCAGCCCAGTGGCCTGGCAAGG TACTCTAGGATGACTGATTCCAGCACAGTGGCCTGGCAAGG < 41bp 0.505631648598027 0.832957612149006 0.5026469 0.55210716 prediction 0.654651927101957 Functional Gain - LINC00615 ENSG00000196243 ncRNA_exonic Human lincRNA chr12:91341893 chr12:91341897 . . 0 25 hm5C_associated_SNPs_100299 0 0 0 0 0 unknown 0.500231644092641 0.500231643962044 0.0989205200000001 0 hm5C_site_53444 DeepMRMD:0.0989205200000001;iRNA_m5C:0 53445 chr1 220971285 220971285 1 + C A OV 220971281 + 220971261 220971301 41 TCGCTGGCGGATCTCAACTCCAGGCTAGAGAAGAAAGTTAA TCGCTGGCGGATCTCAACTCCAGGATAGAGAAGAAAGTTAA < 41bp 0.441607517914467 0.827261921153551 0.8789959 0.74520516 prediction 0.654523842307102 Functional Gain - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220971281 chr1:220971285 nonsynonymous SNV 0.945 1 25 hm5C_associated_SNPs_100300 0 0 1 0 2 Ribosome 0.500231644562799 0.500231643645124 0 0 hm5C_site_53445 DeepMRMD:0;iRNA_m5C:0 53446 chr12 55615501 55615501 1 + C A LUAD 55615497 + 55615477 55615517 41 AACAATTCTGAGGATGTCCTCTGCCACTGGCCGCCAGAAGG AACAATTCTGAGGATGTCCTCTGCAACTGGCCGCCAGAAGG < 41bp 0.464032357656069 0.827251394845726 0.086542785 0.110476136 prediction 0.654502789691453 Functional Gain - OR10A7 ENSG00000179919 CDS Human protein_coding chr12:55615497 chr12:55615501 synonymous SNV . 0 25 hm5C_associated_SNPs_100301 0 0 0 0 0 unknown 0.500231643921094 0.500231678489771 0 6.91373531758188e-08 hm5C_site_53446 DeepMRMD:0;iRNA_m5C:6.91373531758188e-08 53447 chr1 158324250 158324250 1 + C A LUSC 158324246 + 158324226 158324266 41 CTCCAAACTTCCTCCTTTGCCAACCACAGCTGGGCACACAG CTCCAAACTTCCTCCTTTGCCAACAACAGCTGGGCACACAG < 41bp 0.506649323231534 0.833830923810028 0.30430973 0.2466428 prediction 0.654363201156989 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158324246 chr1:158324250 nonsynonymous SNV 0.945 0 25 hm5C_associated_SNPs_100302 0 0 0 0 1 exosome 0.500231643921092 0.500231643921056 0 0 hm5C_site_53447 DeepMRMD:0;iRNA_m5C:0 53448 chr7 53103540 53103540 1 + C A rs78135827 53103536 + 53103516 53103556 41 GTCCCTGGCCCCTGAGGTCCCTGACTCAGAGCCATATTCAG GTCCCTGGCCCCTGAGGTCCCTGAATCAGAGCCATATTCAG < 41bp 0.520970784563069 0.848101850086824 0.120179504 0.14666593 prediction 0.654262131047511 Functional Gain - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103536 chr7:53103540 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100303 0 0 0 0 0 unknown 0.500231643882867 0.500231643920698 0 7.56610329943896e-11 hm5C_site_53448 DeepMRMD:0;iRNA_m5C:7.56610329943896e-11 53449 chr11 57958187 57958187 1 + C A rs148643067 57958183 + 57958163 57958203 41 CTTGGTGGACATCTGCTACTCGTCCGCCATCATCCCTCAGA CTTGGTGGACATCTGCTACTCGTCAGCCATCATCCCTCAGA < 41bp 0.530261137890496 0.85738746961731 0.026592016 0.060813397 prediction 0.654252663453627 Functional Gain - OR9Q2 ENSG00000186513 CDS Human protein_coding chr11:57958183 chr11:57958187 synonymous SNV . 0 25 hm5C_associated_SNPs_100304 0 0 0 0 0 unknown 0.500231643679061 0.500231636743575 0 0 hm5C_site_53449 DeepMRMD:0;iRNA_m5C:0 53450 chr1 44128655 44128655 1 + C A LUAD 44128651 + 44128631 44128671 41 ATCACCATTGAGGGTGTGAACACCCCATACCTGTACTTTGG ATCACCATTGAGGGTGTGAACACCACATACCTGTACTTTGG < 41bp 0.435961410057129 0.827084888532093 0.21788958 0.19232717 prediction 0.654169777064186 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44128651 chr1:44128655 nonsynonymous SNV 0.963 4 25 hm5C_associated_SNPs_100305 0 0 1 0 1 Nucleus 0.500231643921092 0.500231645022377 0 2.20256834992938e-09 hm5C_site_53450 DeepMRMD:0;iRNA_m5C:2.20256834992938e-09 53451 chr1 221053516 221053516 1 + C A UCEC 221053512 + 221053492 221053532 41 TGGTGGCGCCCTCCGAAGTCCCGGCTGGCTTCCCGCAGCGG TGGTGGCGCCCTCCGAAGTCCCGGATGGCTTCCCGCAGCGG < 41bp 0.524343327500478 0.851410632428593 0.879009 0.8813154 prediction 0.65413460985623 Functional Gain - HLX ENSG00000136630 CDS Human protein_coding chr1:221053512 chr1:221053516 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_100306 0 0 0 0 0 exosome 0.500231576293155 0.500231568156715 0.00461279999999986 0 hm5C_site_53451 DeepMRMD:0.00461279999999986;iRNA_m5C:0 53452 chr16 2653507 2653507 1 + C A rs539309048 2653503 + 2653483 2653523 41 ATCACTGCGAGCTCCTGCCGCTGGCCCGTGGCAGGCTCGGG ATCACTGCGAGCTCCTGCCGCTGGACCGTGGCAGGCTCGGG < 41bp 0.514773119215712 0.841826257876311 0.34248462 0.24542111 prediction 0.654106277321197 Functional Gain - LOC652276 ENSG00000215154 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:2653503 chr16:2653507 . . 0 25 hm5C_associated_SNPs_100307 0 0 1 0 0 unknown 0.500231643904968 0.500231644065801 0 3.21666915326091e-10 hm5C_site_53452 DeepMRMD:0;iRNA_m5C:3.21666915326091e-10 53453 chr11 61254046 61254046 1 + C A LUAD 61254042 + 61254022 61254062 41 CAGAGGCTCCAAGCGGGAAACAGCCTTCAGCCGAGGGAATG CAGAGGCTCCAAGCGGGAAACAGCATTCAGCCGAGGGAATG < 41bp 0.435924130554564 0.827046268336695 0.31913322 0.54224825 prediction 0.65409253667339 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61254042 chr11:61254046 synonymous SNV . 0 25 hm5C_associated_SNPs_100308 0 0 0 0 1 exosome 0.500231643921092 0.500231628629794 0.0844965 0 hm5C_site_53453 DeepMRMD:0.0844965;iRNA_m5C:0 53454 chr19 863160 863160 1 + T G UCEC 863157 + 863137 863177 41 GTGGTCACCTCGGGCTCGCGCGTTTGCGGCAACCGCAAGAA GTGGTCACCTCGGGCTCGCGCGTGTGCGGCAACCGCAAGAA < 41bp 0.475500184756882 0.82704623596861 0.7064155 0.84468544 prediction 0.654092471937221 Functional Gain - CFD ENSG00000197766 CDS Human protein_coding chr19:863157 chr19:863160 synonymous SNV . 0 24 hm5C_associated_SNPs_100309 0 0 1 0 0 Cytosol 0.500231643921093 0.500231641568864 0.27653988 0 hm5C_site_53454 DeepMRMD:0.27653988;iRNA_m5C:0 53455 chr10 104678309 104678309 1 + T G SKCM 104678306 + 104678286 104678326 41 CAGGCAGCCGCCGCACTGCCCACTTGGAAGATGGCGGCGCG CAGGCAGCCGCCGCACTGCCCACGTGGAAGATGGCGGCGCG < 41bp 0.521545947550579 0.848591651745516 0.047778815 0.48988572 prediction 0.654091408389873 Functional Gain - CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104678306 chr10:104678309 synonymous SNV . 0 24 hm5C_associated_SNPs_100310 0 0 1 0 0 Ribosome 0.500231643921092 0.500231648114762 0 8.38733882346787e-09 hm5C_site_53455 DeepMRMD:0;iRNA_m5C:8.38733882346787e-09 53456 chr1 150236250 150236250 1 + C A UCEC 150236246 + 150236226 150236266 41 TTGGCTGTCTCTGCCTTCTCCTGGCTGTTTATTTCATTGCT TTGGCTGTCTCTGCCTTCTCCTGGATGTTTATTTCATTGCT < 41bp 0.440640921322033 0.826999356274902 0.45114583 0.67593294 prediction 0.653998712549803 Functional Gain - CA14 ENSG00000118298 CDS Human protein_coding chr1:150236246 chr1:150236250 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_100311 0 0 0 0 2 exosome 0.500231643923122 0.500231645169703 0.35186588 2.49316234324226e-09 hm5C_site_53456 DeepMRMD:0.35186588;iRNA_m5C:2.49316234324226e-09 53457 chr10 101439612 101439612 1 + C A READ 101439608 + 101439588 101439628 41 TCTTTACATCCTCTGCACAGCAGGCATGAGGCTTCTCCCTG TCTTTACATCCTCTGCACAGCAGGAATGAGGCTTCTCCCTG < 41bp 0.544512111653953 0.871508268068684 0.3772407 0.5687467 prediction 0.653992312829461 Functional Gain - ENTPD7 ENSG00000198018 CDS Human protein_coding chr10:101439608 chr10:101439612 synonymous SNV . 0 25 hm5C_associated_SNPs_100312 0 0 1 0 1 Endoplasmic reticulum 0.500231643921184 0.500231643932953 0.1374934 2.35391706127075e-11 hm5C_site_53457 DeepMRMD:0.1374934;iRNA_m5C:2.35391706127075e-11 53458 chr4 71063746 71063746 1 + T G LUSC 71063743 + 71063723 71063763 41 TCTCTTTATCAGCTCTAGACCAGTTTGCTGGACTGCTCCCA TCTCTTTATCAGCTCTAGACCAGGTTGCTGGACTGCTCCCA < 41bp 0.463468801922992 0.826993090941815 0.40733424 0.8180849 prediction 0.65398618188363 Functional Gain - ODAM ENSG00000109205 CDS Human protein_coding chr4:71063743 chr4:71063746 nonsynonymous SNV 0.016 0 24 hm5C_associated_SNPs_100313 0 0 0 0 0 exosome 0.500231483916855 0.500231643934819 0.6361698 3.20035927758866e-07 hm5C_site_53458 DeepMRMD:0.6361698;iRNA_m5C:3.20035927758866e-07 53459 chr6 99283514 99283514 1 + C A LUAD 99283510 + 99283490 99283530 41 TCCGCCTGGCCACCCAGGCGCGCACCACGACCCGCACTCGG TCCGCCTGGCCACCCAGGCGCGCAACACGACCCGCACTCGG < 41bp 0.473286664766345 0.826991764714488 0.09413338 0.16122782 prediction 0.653983529428976 Functional Gain - POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283510 chr6:99283514 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_100314 0 0 0 0 0 exosome 0.500231643689555 0.500231643919907 0 4.60703697413578e-10 hm5C_site_53459 DeepMRMD:0;iRNA_m5C:4.60703697413578e-10 53460 chrX 64709206 64709206 1 + C A ESCA 64709202 + 64709182 64709222 41 GCCCAGCTCCAGAGAGATTGCAAGCCCTGAATTGTCTCTTG GCCCAGCTCCAGAGAGATTGCAAGACCTGAATTGTCTCTTG < 41bp 0.469322854693181 0.826984047567896 0.3189256 0.85751486 prediction 0.653968095135792 Functional Gain - ZC3H12B ENSG00000102053 CDS Human protein_coding chrX:64709202 chrX:64709206 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_100315 0 0 0 0 1 Endoplasmic reticulum 0.500231643921073 0.500231643915466 0.71502972 0 hm5C_site_53460 DeepMRMD:0.71502972;iRNA_m5C:0 53461 chr16 56868102 56868102 1 + C A CESC 56868098 + 56868078 56868118 41 CTGAACTTCGTGCGGCTCCTCATGCTGTACACCCGGAAGTT CTGAACTTCGTGCGGCTCCTCATGATGTACACCCGGAAGTT < 41bp 0.450994077486442 0.826978129584942 0.06443921 0.24201238 prediction 0.653956259169884 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56868098 chr16:56868102 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_100316 0 0 1 0 2 Nucleus 0.500231637222068 0.500231636457482 0 0 hm5C_site_53461 DeepMRMD:0;iRNA_m5C:0 53462 chr17 37898897 37898897 1 + C A UCEC 37898893 + 37898873 37898913 41 CTTCCCTGAGCTCTGCAGTCCTCCCTCACAGAGCCCAATTC CTTCCCTGAGCTCTGCAGTCCTCCATCACAGAGCCCAATTC < 41bp 0.419903000452751 0.826868888452199 0.20373121 0.9710184 prediction 0.653737776904399 Functional Gain - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37898893 chr17:37898897 synonymous SNV . 0 25 hm5C_associated_SNPs_100317 0 0 1 0 2 Cytosol 0.500231644111857 0.500231643918016 0.9420368 0 hm5C_site_53462 DeepMRMD:0.9420368;iRNA_m5C:0 53463 chr12 41582588 41582588 1 + C A LUAD 41582584 + 41582564 41582604 41 CACTGCGACTTCGGCCCTGCCCGCCGGCTCCGCAGCCGCGG CACTGCGACTTCGGCCCTGCCCGCAGGCTCCGCAGCCGCGG < 41bp 0.488620108393067 0.826865351364313 0.09845182 0.13208315 prediction 0.653730702728625 Functional Gain - PDZRN4 ENSG00000165966 CDS Human protein_coding chr12:41582584 chr12:41582588 synonymous SNV . 0 25 hm5C_associated_SNPs_100318 0 0 0 0 0 exosome 0.500231643921093 0.500231643921478 0 7.71160912904634e-13 hm5C_site_53463 DeepMRMD:0;iRNA_m5C:7.71160912904634e-13 53464 chr1 32681437 32681437 1 + T G BRCA 32681434 + 32681414 32681454 41 GATAGTGGAAGAGGCCTTGTCCCTGGAAAACCAGCCTGGGG GATAGTGGAAGAGGCCTTGTCCCGGGAAAACCAGCCTGGGG < 41bp 0.534944701311927 0.861776675418355 0.27030724 0.8274647 prediction 0.653663948212855 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32681434 chr1:32681437 nonsynonymous SNV 0.046 0 24 hm5C_associated_SNPs_100319 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0.6549294 0 hm5C_site_53464 DeepMRMD:0.6549294;iRNA_m5C:0 53465 chr6 17292081 17292081 1 + C A LUAD 17292077 + 17292057 17292097 41 ACAGCAGCTGCCGCCTCCACCACCCCTTACATTGATTACAC ACAGCAGCTGCCGCCTCCACCACCACTTACATTGATTACAC < 41bp 0.554414251718825 0.881243151050674 0.15300778 0.23197049 prediction 0.653657798663699 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292077 chr6:17292081 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_100320 0 0 0 2 1 cytosol 0.500231643964053 0.500231647236036 0 6.54396647981059e-09 hm5C_site_53465 DeepMRMD:0;iRNA_m5C:6.54396647981059e-09 53466 chr13 113770092 113770092 1 + C A rs6040 113770088 + 113770068 113770108 41 CGAGGGGTACTCTCTGCTGGCAGACGGGGTGTCCTGCACAC CGAGGGGTACTCTCTGCTGGCAGAAGGGGTGTCCTGCACAC < 41bp 0.547403593947687 0.874222659348511 0.8730723 0.8899038 prediction 0.653638130801648 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113770088 chr13:113770092 nonsynonymous SNV 0.018 5 25 hm5C_associated_SNPs_100321 0 0 1 0 1 insoluble cytoplasm 0.500231643920509 0.500231643861523 0.033663 0 hm5C_site_53466 DeepMRMD:0.033663;iRNA_m5C:0 53467 chr13 33635027 33635027 1 + C A UCEC 33635023 + 33635003 33635043 41 CCCTGGACTGGGCCCTGATTCTCCCTCTGGGTAACCAGTCC CCCTGGACTGGGCCCTGATTCTCCATCTGGGTAACCAGTCC < 41bp 0.579835880424534 0.906639512546801 0.057867408 0.968565 prediction 0.653607264244533 Functional Gain - KL ENSG00000133116 CDS Human protein_coding chr13:33635023 chr13:33635027 nonsynonymous SNV 0.620 4 25 hm5C_associated_SNPs_100322 1 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.93713 0 hm5C_site_53467 DeepMRMD:0.93713;iRNA_m5C:0 Tumoral calcinosis, familial, hyperphosphatemic Tumoral calcinosis, familial, hyperphosphatemic 53468 chr17 1648635 1648635 1 + C A rs185025710 1648631 + 1648611 1648651 41 TTGCTCCTTTCCGCAGCTAACTAGCGGGCCGAACCAGGAGC TTGCTCCTTTCCGCAGCTAACTAGAGGGCCGAACCAGGAGC < 41bp 0.459288227449641 0.826794638685193 0.39234835 0.60669047 prediction 0.653589277370386 Functional Gain - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1648631 chr17:1648635 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100323 0 0 1 0 3 Endoplasmic reticulum 0.500231643921094 0.500231643921093 0.21338094 0 hm5C_site_53468 DeepMRMD:0.21338094;iRNA_m5C:0 53469 chrX 147063086 147063086 1 + C A UCEC 147063082 + 147063062 147063102 41 CCGCCATGGCTGACAGGCCTCAGCCAGGATGGCGGGAATCT CCGCCATGGCTGACAGGCCTCAGCAAGGATGGCGGGAATCT < 41bp 0.465872484032097 0.826788472405414 0.064109266 0.16007659 prediction 0.653576944810829 Functional Gain - FMR1NB ENSG00000176988 CDS Human protein_coding chrX:147063082 chrX:147063086 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_100324 0 0 0 0 0 exosome 0.50023164392125 0.500232042808662 0 7.97774823313446e-07 hm5C_site_53469 DeepMRMD:0;iRNA_m5C:7.97774823313446e-07 53470 chr14 65008282 65008282 1 + C A LIHC 65008278 + 65008258 65008298 41 CTGGGCGGTGAGGACTTCGACAACCGCATGGTGAGCCACCT CTGGGCGGTGAGGACTTCGACAACAGCATGGTGAGCCACCT < 41bp 0.452860430291322 0.826779972991398 0.069170386 0.13014233 prediction 0.653559945982796 Functional Gain - HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65008278 chr14:65008282 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_100325 0 0 0 0 0 Cytosol 0.500231631337815 0.500231643924862 0 2.51740930323763e-08 hm5C_site_53470 DeepMRMD:0;iRNA_m5C:2.51740930323763e-08 53471 chr16 2664803 2664803 1 + C A rs534243922 2664799 + 2664779 2664819 41 CTGCCTGCCTCCTCCGAGTTCACGCGGGGCGTGGAGTGACG CTGCCTGCCTCCTCCGAGTTCACGAGGGGCGTGGAGTGACG < 41bp 0.50569635965299 0.832475392590673 0.45066884 0.5226343 prediction 0.653558065875368 Functional Gain - LOC652276 ENSG00000215154 ncRNA_intronic Human transcribed_unprocessed_pseudogene chr16:2664799 chr16:2664803 . . 0 25 hm5C_associated_SNPs_100326 0 0 0 0 0 unknown 0.500231643921125 0.500231644223437 0.0452686 6.04623906497181e-10 hm5C_site_53471 DeepMRMD:0.0452686;iRNA_m5C:6.04623906497181e-10 53472 chr10 71868902 71868902 1 + C A UCEC 71868898 + 71868878 71868918 41 CTTGAAGAGACCATCAAAAACTGCCTGTCAGCGGCGGAGGA CTTGAAGAGACCATCAAAAACTGCATGTCAGCGGCGGAGGA < 41bp 0.572968837449858 0.899733446583407 0.07473999 0.087672085 prediction 0.653529218267098 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71868898 chr10:71868902 nonsynonymous SNV 0.958 4 25 hm5C_associated_SNPs_100327 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921065 0 0 hm5C_site_53472 DeepMRMD:0;iRNA_m5C:0 53473 chrX 140995207 140995207 1 + C A LUAD 140995203 + 140995183 140995223 41 AGCCCTCCTGAGGGGATGCACTCCCAATCTCCTCTCCAGAG AGCCCTCCTGAGGGGATGCACTCCAAATCTCCTCTCCAGAG < 41bp 0.443114875620433 0.826694281233485 0.19531274 0.9577832 prediction 0.65338856246697 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140995203 chrX:140995207 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_100328 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.9155664 0 hm5C_site_53473 DeepMRMD:0.9155664;iRNA_m5C:0 53474 chr22 23438545 23438545 1 + C A LUAD 23438541 + 23438521 23438561 41 CCACTGCTTCGAGGGCGTCACAGCCATCATCTTCTGTGTGG CCACTGCTTCGAGGGCGTCACAGCAATCATCTTCTGTGTGG < 41bp 0.445111698376201 0.826673216772052 0.088149875 0.2039398 prediction 0.653346433544103 Functional Gain - GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438541 chr22:23438545 synonymous SNV . 0 25 hm5C_associated_SNPs_100329 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921195 0 2.04281036531029e-13 hm5C_site_53474 DeepMRMD:0;iRNA_m5C:2.04281036531029e-13 53475 chr3 98188563 98188563 1 + T G LUSC 98188560 + 98188540 98188580 41 GGGGAATATTAGTTTGGTGGCACTGATATTTACACACCGTC GGGGAATATTAGTTTGGTGGCACGGATATTTACACACCGTC < 41bp 0.51447518668004 0.841145171386139 0.22733593 0.44247213 prediction 0.653339969412197 Functional Gain - OR5K1 ENSG00000232382 CDS Human protein_coding chr3:98188560 chr3:98188563 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_100330 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_53475 DeepMRMD:0;iRNA_m5C:0 53476 chr10 60560042 60560042 1 + C A GBM 60560038 + 60560018 60560058 41 ATCACGGGGATCCGTCCATCCAGACAAGTGGGTCTGAGCAG ATCACGGGGATCCGTCCATCCAGAAAAGTGGGTCTGAGCAG < 41bp 0.440859421365867 0.826653374827365 0.34688497 0.41180354 prediction 0.65330674965473 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60560038 chr10:60560042 nonsynonymous SNV 0.129 2 25 hm5C_associated_SNPs_100331 0 0 1 0 2 nucleus 0.500227786863527 0.50023524449821 0 1.49152693651455e-05 hm5C_site_53476 DeepMRMD:0;iRNA_m5C:1.49152693651455e-05 53477 chr5 34808710 34808710 1 + C A THCA 34808706 + 34808686 34808726 41 CAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATTCTCTGC CAGCGGCTCAGGGCTGCCTTCAAGATGTGCAGATTCTCTGC < 41bp 0.448663801759541 0.82662929293804 0.39036497 0.3332221 prediction 0.65325858587608 Functional Gain - RAI14 ENSG00000039560 CDS Human protein_coding chr5:34808706 chr5:34808710 nonsynonymous SNV 0.953 0 25 hm5C_associated_SNPs_100332 0 0 1 0 2 Cytosol 0.500231643920722 0.500231643921092 0 7.40296712820054e-13 hm5C_site_53477 DeepMRMD:0;iRNA_m5C:7.40296712820054e-13 53478 chr7 72754785 72754785 1 + C A PAAD 72754781 + 72754761 72754801 41 TAGCCCTGTGCTATGGAGAGCAGGCTTTGATCATTGACCAA TAGCCCTGTGCTATGGAGAGCAGGATTTGATCATTGACCAA < 41bp 0.458551793656281 0.826608501898522 0.2127684 0.524731 prediction 0.653217003797044 Functional Gain - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72754781 chr7:72754785 nonsynonymous SNV 0.971 5 25 hm5C_associated_SNPs_100333 0 0 0 2 1 unknown 0.500231643921092 0.500231643921092 0.0494619999999999 0 hm5C_site_53478 DeepMRMD:0.0494619999999999;iRNA_m5C:0 53479 chr1 35250676 35250676 1 + C A rs150245955 35250672 + 35250652 35250692 41 TACCGTGAGGAGCGGGAGCGCCGGCACCGCCAGAAACACGG TACCGTGAGGAGCGGGAGCGCCGGAACCGCCAGAAACACGG < 41bp 0.533624408663357 0.860218242235291 0.7581568 0.87635183 prediction 0.653187667143868 Functional Gain - GJB3 ENSG00000188910 CDS Human protein_coding chr1:35250672 chr1:35250676 nonsynonymous SNV 0.022 2 25 hm5C_associated_SNPs_100334 1 0 0 0 0 Ribosome 0.500231646429434 0.50023144594713 0.23639006 0 hm5C_site_53479 DeepMRMD:0.23639006;iRNA_m5C:0 not specified not specified 53480 chr5 23527761 23527761 1 + C A LUAD 23527757 + 23527737 23527777 41 TCCTCAGACACCAGAGGACACACACAGGGGAGAAGCCCTAC TCCTCAGACACCAGAGGACACACAAAGGGGAGAAGCCCTAC < 41bp 0.437155232081216 0.826585835273241 0.0057427585 0.055976152 prediction 0.653171670546482 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23527757 chr5:23527761 nonsynonymous SNV 0.393 1 25 hm5C_associated_SNPs_100335 0 0 1 0 0 unknown 0.500231643926855 0.500231644033563 0 2.13417727934484e-10 hm5C_site_53480 DeepMRMD:0;iRNA_m5C:2.13417727934484e-10 53481 chr22 18069933 18069933 1 + C A UCEC 18069929 + 18069909 18069949 41 TCATCAGGGCTCGGCCTCAGCACCCTCCACCTCCAGGTCCT TCATCAGGGCTCGGCCTCAGCACCATCCACCTCCAGGTCCT < 41bp 0.562117240240277 0.888701604992688 0.0062858164 0.029523492 prediction 0.653168729504821 Functional Gain - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18069929 chr22:18069933 synonymous SNV . 0 25 hm5C_associated_SNPs_100336 0 0 0 0 1 exosome 0.500231646043014 0.500229127349709 0 0 hm5C_site_53481 DeepMRMD:0;iRNA_m5C:0 53482 chr11 55861619 55861619 1 + T G UCEC 55861616 + 55861596 55861636 41 GGTGGCATCTGTATTCTATACGATTGTCATTCCCATGCTGA GGTGGCATCTGTATTCTATACGAGTGTCATTCCCATGCTGA < 41bp 0.485396687328543 0.826575409191745 0.06290865 0.20162398 prediction 0.653150818383491 Functional Gain - OR8I2 ENSG00000172154 CDS Human protein_coding chr11:55861616 chr11:55861619 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_100337 0 0 0 0 0 unknown 0.500231643905527 0.500231616327863 0 0 hm5C_site_53482 DeepMRMD:0;iRNA_m5C:0 53483 chr3 9785266 9785266 1 + C A rs142213134 9785262 + 9785242 9785282 41 CCCTCCAACCCTACCCCTAGCAGCCGAGGAAGAGCGGCTGG CCCTCCAACCCTACCCCTAGCAGCAGAGGAAGAGCGGCTGG < 41bp 0.441170478205951 0.826566258357213 0.33733696 0.4438006 prediction 0.653132516714426 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9785262 chr3:9785266 synonymous SNV . 0 25 hm5C_associated_SNPs_100338 0 0 0 0 2 Nucleus 0.500231643921073 0.500231643921092 0 3.79696274421804e-14 hm5C_site_53483 DeepMRMD:0;iRNA_m5C:3.79696274421804e-14 53484 chr6 99283327 99283327 1 + C A LUSC 99283323 + 99283303 99283343 41 ACGGCGGCTTGCTCTACTCGCAGCCCAGCTTCACGGTGAAC ACGGCGGCTTGCTCTACTCGCAGCACAGCTTCACGGTGAAC < 41bp 0.464854758963325 0.826496222112066 0.44906765 0.382588 prediction 0.652992444224133 Functional Gain - POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283323 chr6:99283327 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_100339 0 0 0 0 0 exosome 0.500231643920131 0.500231644537201 0 1.23413990138488e-09 hm5C_site_53484 DeepMRMD:0;iRNA_m5C:1.23413990138488e-09 53485 chr8 11188632 11188632 1 + C A KIRC 11188628 + 11188608 11188648 41 AAGGAAAGATGGCTGGCAGTCACCCCTACTTCAACCTGCCT AAGGAAAGATGGCTGGCAGTCACCACTACTTCAACCTGCCT < 41bp 0.468688562251918 0.826491931670009 0.09236795 0.29642498 prediction 0.652983863340018 Functional Gain - SLC35G5 ENSG00000177710 CDS Human protein_coding chr8:11188628 chr8:11188632 nonsynonymous SNV 0.414 3 25 hm5C_associated_SNPs_100340 0 0 0 0 0 exosome 0.500231643921049 0.500231643921092 0 8.65973959207622e-14 hm5C_site_53485 DeepMRMD:0;iRNA_m5C:8.65973959207622e-14 53486 chr2 113832133 113832133 1 + C A rs6761821 113832129 + 113832109 113832149 41 GAGAGCAGCTGTGGCCTCTCCTAGCGAGGGGACATGACTCC GAGAGCAGCTGTGGCCTCTCCTAGAGAGGGGACATGACTCC < 41bp 0.49609336550739 0.826483647136222 0.51393867 0.7317779 prediction 0.652967294272445 Functional Gain - IL1F10 ENSG00000136697 intronic Human protein_coding chr2:113832129 chr2:113832133 . . 0 25 hm5C_associated_SNPs_100341 0 0 0 0 0 unknown 0.500231643921105 0.500231643921093 0.43567846 0 hm5C_site_53486 DeepMRMD:0.43567846;iRNA_m5C:0 53487 chr10 12139731 12139731 1 + C A rs80324702 12139727 + 12139707 12139747 41 ATATGCAGAGCACCTCATTGCTGGCGGACTCATGACGCAGG ATATGCAGAGCACCTCATTGCTGGAGGACTCATGACGCAGG < 41bp 0.559923504832246 0.886374194346535 0.18146569 0.60760355 prediction 0.652901379028578 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12139727 chr10:12139731 synonymous SNV . 0 25 hm5C_associated_SNPs_100342 0 0 1 0 1 Endoplasmic reticulum 0.500231250080635 0.500231634914509 0.2152071 7.69667748867775e-07 hm5C_site_53487 DeepMRMD:0.2152071;iRNA_m5C:7.69667748867775e-07 53488 chr17 41382544 41382544 1 + C A rs575845651 41382540 + 41382520 41382560 41 GTCAGGAGTTCGAGACCAGCCTGGCCAACTTGGCGAGACCT GTCAGGAGTTCGAGACCAGCCTGGACAACTTGGCGAGACCT < 41bp 0.480282991528112 0.826409674749358 0.179441 0.3737569 prediction 0.652819349498716 Functional Gain - LINC00854;LINC00910 ENSG00000236383 ncRNA_intronic Human protein_coding chr17:41382540 chr17:41382544 . . 0 25 hm5C_associated_SNPs_100343 0 0 0 0 0 unknown 0.500244923282921 0.500231753522244 0 0 hm5C_site_53488 DeepMRMD:0;iRNA_m5C:0 53489 chr7 48081042 48081042 1 + C A HNSC 48081038 + 48081018 48081058 41 GAGACTCACACAGCGAGAACCTGCCTGGGACTCGGAGATAC GAGACTCACACAGCGAGAACCTGCATGGGACTCGGAGATAC < 41bp 0.57007376404002 0.896453163107708 0.089600444 0.3730804 prediction 0.652758798135377 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48081038 chr7:48081042 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100344 0 0 0 0 1 exosome 0.500231991916729 0.500231756888453 0 0 hm5C_site_53489 DeepMRMD:0;iRNA_m5C:0 53490 chr2 131976402 131976402 1 + C A UCEC 131976398 + 131976378 131976418 41 GTCCGTGGAGAAGATCTGGACAAGCTCCACAGAGCTGCCTG GTCCGTGGAGAAGATCTGGACAAGATCCACAGAGCTGCCTG < 41bp 0.485172815541858 0.826366200916817 0.11829418 0.18143505 prediction 0.652732401833634 Functional Gain - POTEE ENSG00000188219 CDS Human protein_coding chr2:131976398 chr2:131976402 nonsynonymous SNV 0.724 1 25 hm5C_associated_SNPs_100345 0 0 1 0 1 chromatin 0.500231643919347 0.500230992182956 0 0 hm5C_site_53490 DeepMRMD:0;iRNA_m5C:0 53491 chr11 62189772 62189772 1 + C A UCEC 62189768 + 62189748 62189788 41 CACACCCTCCAGTTATGAGGCTGCCATGGAACTTTTCAGCC CACACCCTCCAGTTATGAGGCTGCAATGGAACTTTTCAGCC < 41bp 0.434287884555847 0.826340157752579 0.013298184 0.014222354 prediction 0.652680315505157 Functional Gain - SCGB1A1 ENSG00000149021 CDS Human protein_coding chr11:62189768 chr11:62189772 synonymous SNV . 0 25 hm5C_associated_SNPs_100346 0 0 0 0 1 exosome 0.500231643295773 0.50023163662949 0 0 hm5C_site_53491 DeepMRMD:0;iRNA_m5C:0 53492 chr3 71804047 71804047 1 + T G GBM 71804044 + 71804024 71804064 41 AATTCAAGACGGAGAAGAGGCTGTGCAAGATGTTCTACGCC AATTCAAGACGGAGAAGAGGCTGGGCAAGATGTTCTACGCC < 41bp 0.500245134067823 0.826576874922871 0.2067211 0.72166497 prediction 0.652663481710096 Functional Gain - GPR27 ENSG00000170837 CDS Human protein_coding chr3:71804044 chr3:71804047 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_100347 0 0 1 0 0 exosome 0.500231643921092 0.500231644156892 0.44332994 4.7159898208804e-10 hm5C_site_53492 DeepMRMD:0.44332994;iRNA_m5C:4.7159898208804e-10 53493 chr1 248685360 248685360 1 + C A LUAD 248685356 + 248685336 248685376 41 TGCGCTACATAGCCATTATGCACCCCAGGTTCTGTGCGTCT TGCGCTACATAGCCATTATGCACCACAGGTTCTGTGCGTCT < 41bp 0.542299978638597 0.86862365003138 0.104949504 0.089763135 prediction 0.652647342785566 Functional Gain - OR2G6 ENSG00000188558 CDS Human protein_coding chr1:248685356 chr1:248685360 nonsynonymous SNV 0.009 1 25 hm5C_associated_SNPs_100348 0 0 0 0 0 unknown 0.500231643920422 0.500231643110218 0 0 hm5C_site_53493 DeepMRMD:0;iRNA_m5C:0 53494 chr1 158325807 158325807 1 + C A LIHC 158325803 + 158325783 158325823 41 CGAGACATGGTATCTCCGAGCAACCCTGGATGTGGCGGCTG CGAGACATGGTATCTCCGAGCAACACTGGATGTGGCGGCTG < 41bp 0.50843137397306 0.83475071401875 0.17299902 0.22008178 prediction 0.65263868009138 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325803 chr1:158325807 synonymous SNV . 0 25 hm5C_associated_SNPs_100349 0 0 0 0 1 exosome 0.500231643921093 0.500231643929949 0 1.77127201794747e-11 hm5C_site_53494 DeepMRMD:0;iRNA_m5C:1.77127201794747e-11 53495 chr15 89911359 89911359 1 + C A rs376381874 89911355 + 89911335 89911375 41 TCACAACTTCTGCGTGCGAGCGCCCGCCCCACCGACCGCCC TCACAACTTCTGCGTGCGAGCGCCAGCCCCACCGACCGCCC < 41bp 0.505196755888068 0.831485152380902 0.14236233 0.17672086 prediction 0.652576792985669 Functional Gain - MIR9-3HG ENSG00000255571 ncRNA_intronic Human lincRNA chr15:89911355 chr15:89911359 . . 0 25 hm5C_associated_SNPs_100350 0 0 0 0 0 unknown 0.500231643921092 0.500231643921033 0 0 hm5C_site_53495 DeepMRMD:0;iRNA_m5C:0 53496 chr5 140737010 140737010 1 + C A LUAD 140737006 + 140736986 140737026 41 TTGTGGGCGTGGACGGGGTTCGGGCTTTCCTGCAGACCTAT TTGTGGGCGTGGACGGGGTTCGGGATTTCCTGCAGACCTAT < 41bp 0.524810281160839 0.851027299000429 0.8938805 0.9086238 prediction 0.65243403567918 Functional Gain - PCDHGA4 ENSG00000262576 CDS Human protein_coding chr5:140737006 chr5:140737010 nonsynonymous SNV 0.937 2 25 hm5C_associated_SNPs_100351 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0294866 0 hm5C_site_53496 DeepMRMD:0.0294866;iRNA_m5C:0 53497 chr17 4047090 4047090 1 + C A COAD 4047086 + 4047066 4047106 41 GCCGTGGGCTTTTGTTGGGCCTGGCTGTAGCCGCAGCAGCG GCCGTGGGCTTTTGTTGGGCCTGGATGTAGCCGCAGCAGCG < 41bp 0.530238451277398 0.856430265182849 0.14069721 0.21560922 prediction 0.652383627810903 Functional Gain - CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4047086 chr17:4047090 nonsynonymous SNV 0.230 1 25 hm5C_associated_SNPs_100352 0 0 1 0 0 Ribosome 0.500231643923484 0.500231644375031 0 9.03094043991359e-10 hm5C_site_53497 DeepMRMD:0;iRNA_m5C:9.03094043991359e-10 53498 chr11 44951592 44951592 1 + C A rs35906924 44951588 + 44951568 44951608 41 CCATGACTTCCCACCGCGCCCTCGCTCCTACCTCCCCACAC CCATGACTTCCCACCGCGCCCTCGATCCTACCTCCCCACAC < 41bp 0.453117657710821 0.826185937752689 0.021577358 0.142364 prediction 0.652371875505377 Functional Gain - TSPAN18 ENSG00000157570 UTR3 Human protein_coding chr11:44951588 chr11:44951592 . . 0 25 hm5C_associated_SNPs_100353 0 0 0 0 0 Cytosol 0.500231643817508 0.500231640556292 0 0 hm5C_site_53498 DeepMRMD:0;iRNA_m5C:0 53499 chr1 110034244 110034244 1 + T G UCEC 110034241 + 110034221 110034261 41 GCCGGCCAGTGAAGGCCAAGCACTGTCAGGCTGGTGCCCCT GCCGGCCAGTGAAGGCCAAGCACGGTCAGGCTGGTGCCCCT < 41bp 0.468153706725402 0.826170804242848 0.07144958 0.31828403 prediction 0.652341608485695 Functional Gain - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110034241 chr1:110034244 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_100354 0 0 0 0 1 nucleoplasm 0.500229947691481 0.500231644032023 0 3.39268108340285e-06 hm5C_site_53499 DeepMRMD:0;iRNA_m5C:3.39268108340285e-06 53500 chrX 129546420 129546420 1 + C A CESC 129546416 + 129546396 129546436 41 AGAGCAACCATCCTCTTCGTCACCCAGACGCAAGACAGTAA AGAGCAACCATCCTCTTCGTCACCAAGACGCAAGACAGTAA < 41bp 0.433536946325032 0.826150006548414 0.09190568 0.06186813 prediction 0.652300013096828 Functional Gain - RBMX2 ENSG00000134597 CDS Human protein_coding chrX:129546416 chrX:129546420 synonymous SNV . 0 25 hm5C_associated_SNPs_100355 0 0 1 0 1 exosome 0.50023200437591 0.500235252308912 0 6.49586600376395e-06 hm5C_site_53500 DeepMRMD:0;iRNA_m5C:6.49586600376395e-06 53501 chr8 22864389 22864389 1 + C A UCEC 22864385 + 22864365 22864405 41 GCCATCCGAGCTGCACTCATCTCCCGCCGCCACCTGCAGTT GCCATCCGAGCTGCACTCATCTCCAGCCGCCACCTGCAGTT < 41bp 0.414861516457317 0.826147395043311 0.20024765 0.9401634 prediction 0.652294790086622 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22864385 chr8:22864389 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100356 0 0 1 0 0 cytosol 0.500231643940491 0.500231643882517 0.8803268 0 hm5C_site_53501 DeepMRMD:0.8803268;iRNA_m5C:0 53502 chr17 42980121 42980121 1 + C A GBM 42980117 + 42980097 42980137 41 AGGAGCAGGGTCTGGAGGAGCAGTCTGGTGGGCTCCAGGAG AGGAGCAGGGTCTGGAGGAGCAGTATGGTGGGCTCCAGGAG < 41bp 0.488466411959736 0.826131231386571 0.8511715 0.8444462 prediction 0.652262462773142 Functional Gain - CCDC103 ENSG00000167131 CDS Human protein_coding chr17:42980117 chr17:42980121 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_100357 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0 6.66133814775094e-16 hm5C_site_53502 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 53503 chr8 27507273 27507273 1 + C A GBM 27507269 + 27507249 27507289 41 TGTGCGTTACAGAAGAGGACCTGGCGGGTGACGACGAGGAC TGTGCGTTACAGAAGAGGACCTGGAGGGTGACGACGAGGAC < 41bp 0.557315126360787 0.883395473811802 0.23803255 0.30033553 prediction 0.65216069490203 Functional Gain - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27507269 chr8:27507273 nonsynonymous SNV 0.332 0 25 hm5C_associated_SNPs_100358 0 0 1 0 1 Cytosol 0.500231643921069 0.500231643921078 0 1.66533453693773e-14 hm5C_site_53503 DeepMRMD:0;iRNA_m5C:1.66533453693773e-14 53504 chr12 122481895 122481895 1 + C A rs144915314 122481891 + 122481871 122481911 41 AGAGCCCAACTCGGCTGTGCCCAGCGACGGCACCGAGGCCA AGAGCCCAACTCGGCTGTGCCCAGAGACGGCACCGAGGCCA < 41bp 0.442486135554129 0.826079109595959 0.097358644 0.44559613 prediction 0.652158219191918 Functional Gain - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122481891 chr12:122481895 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_100359 0 0 1 0 1 Nucleus 0.500231643930049 0.500231644119561 0 3.79023923358091e-10 hm5C_site_53504 DeepMRMD:0;iRNA_m5C:3.79023923358091e-10 53505 chr19 9271224 9271224 1 + T G rs45608539 9271221 + 9271201 9271241 41 AAAATCCACATGCGAGTTCACACTGGCGAGAGGCCTTACAA AAAATCCACATGCGAGTTCACACGGGCGAGAGGCCTTACAA < 41bp 0.543102892594694 0.86911436522094 0.27172744 0.85280645 prediction 0.652022945252493 Functional Gain - ZNF317 ENSG00000130803 CDS Human protein_coding chr19:9271221 chr19:9271224 synonymous SNV . 0 24 hm5C_associated_SNPs_100360 0 0 1 0 0 Nucleus 0.500245827327796 0.500231703772477 0.7056129 0 hm5C_site_53505 DeepMRMD:0.7056129;iRNA_m5C:0 53506 chr20 37632428 37632428 1 + C A GBM 37632424 + 37632404 37632444 41 ACTGTTGTGTCGATGCTCATCGAGCAGGCTCGAGCACTAGC ACTGTTGTGTCGATGCTCATCGAGAAGGCTCGAGCACTAGC < 41bp 0.560351291540179 0.886356380197262 0.3746939 0.511983 prediction 0.652010177314166 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632424 chr20:37632428 nonsynonymous SNV 0.896 1 25 hm5C_associated_SNPs_100361 0 0 1 0 1 Endoplasmic reticulum 0.500238340610978 0.50023275940008 0.0239659999999999 0 hm5C_site_53506 DeepMRMD:0.0239659999999999;iRNA_m5C:0 53507 chr20 56730549 56730549 1 + C A LUSC 56730545 + 56730525 56730565 41 TGATCAAGTGTGAAGAAGATCTCCCCACCCCAAAGCCCAAA TGATCAAGTGTGAAGAAGATCTCCACACCCCAAAGCCCAAA < 41bp 0.419348109377914 0.826000442978435 0.06204775 0.89761937 prediction 0.65200088595687 Functional Gain - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56730545 chr20:56730549 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100362 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0.79523874 0 hm5C_site_53507 DeepMRMD:0.79523874;iRNA_m5C:0 53508 chr11 31653919 31653919 1 + C A PRAD 31653915 + 31653895 31653935 41 TCTTCTGAGAACCTCTCTTTCAGCCTGCATCATCACAATGC TCTTCTGAGAACCTCTCTTTCAGCATGCATCATCACAATGC < 41bp 0.55878865824475 0.884753354115509 0.38009077 0.78650725 prediction 0.651929391741517 Functional Gain - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31653915 chr11:31653919 synonymous SNV . 0 25 hm5C_associated_SNPs_100363 0 0 0 1 1 Nucleus 0.500231637922266 0.500231799839125 0.5730145 3.2383371872946e-07 hm5C_site_53508 DeepMRMD:0.5730145;iRNA_m5C:3.2383371872946e-07 53509 chr14 57070542 57070542 1 + C A OV 57070538 + 57070518 57070558 41 TATCTGTGTTTGCAGGCTTTCTGGCTCATCTGCTGGAGGAA TATCTGTGTTTGCAGGCTTTCTGGATCATCTGCTGGAGGAA < 41bp 0.463708483457605 0.825961116452466 0.5638677 0.5502123 prediction 0.651922232904932 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57070538 chr14:57070542 synonymous SNV . 0 25 hm5C_associated_SNPs_100364 0 0 0 0 1 Endoplasmic reticulum 0.500231830342434 0.500237315735808 0 1.09707867486097e-05 hm5C_site_53509 DeepMRMD:0;iRNA_m5C:1.09707867486097e-05 53510 chr2 10188284 10188284 1 + C A STAD 10188280 + 10188260 10188300 41 AATGACCTGCCCAGGAAAACCACCCCTCTGATTTCTGTCTC AATGACCTGCCCAGGAAAACCACCACTCTGATTTCTGTCTC < 41bp 0.417226545034881 0.82593828139851 0.050869346 0.31693637 prediction 0.65187656279702 Functional Gain - KLF11 ENSG00000172059 CDS Human protein_coding chr2:10188280 chr2:10188284 nonsynonymous SNV 0.933 0 25 hm5C_associated_SNPs_100365 0 0 1 0 0 nucleoplasm 0.500231613325272 0.500231611715 0 0 hm5C_site_53510 DeepMRMD:0;iRNA_m5C:0 53511 chr1 158725478 158725478 1 + C A UCEC 158725474 + 158725454 158725494 41 TGTCATGTATTTGAGATTCTCAGCCACCTACTCAGTGTTTT TGTCATGTATTTGAGATTCTCAGCAACCTACTCAGTGTTTT < 41bp 0.524031512055226 0.849966476427126 0.3942088 0.39481965 prediction 0.651869928743799 Functional Gain - OR6K6 ENSG00000180433 CDS Human protein_coding chr1:158725474 chr1:158725478 synonymous SNV . 0 25 hm5C_associated_SNPs_100366 0 0 0 0 0 unknown 0.500231643919478 0.500231644097248 0 3.55540485941219e-10 hm5C_site_53511 DeepMRMD:0;iRNA_m5C:3.55540485941219e-10 53512 chr5 54603895 54603895 1 + C A rs532577582 54603891 + 54603871 54603911 41 CAGCGTGTTCGAGGGCGACTCGACCACTGCGGCGGGAACCA CAGCGTGTTCGAGGGCGACTCGACAACTGCGGCGGGAACCA < 41bp 0.457256774968723 0.825921071553204 0.31126127 0.5971291 prediction 0.651842143106408 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54603891 chr5:54603895 synonymous SNV . 0 25 hm5C_associated_SNPs_100367 0 0 1 0 0 Nucleus 0.500231643668237 0.500232286401819 0.1942582 1.28546716315903e-06 hm5C_site_53512 DeepMRMD:0.1942582;iRNA_m5C:1.28546716315903e-06 53513 chr13 31903770 31903770 1 + C A KIRC 31903766 + 31903746 31903786 41 CCCAGTGACGAAGACAAAGCCAGGCAGGAGACACAGAAAGG CCCAGTGACGAAGACAAAGCCAGGAAGGAGACACAGAAAGG < 41bp 0.535323114326378 0.861238945920532 0.37981656 0.4343253 prediction 0.651831663188307 Functional Gain - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31903766 chr13:31903770 nonsynonymous SNV 0.585 0 25 hm5C_associated_SNPs_100368 0 0 0 0 0 Ribosome 0.500231643809481 0.50023161955215 0 0 hm5C_site_53513 DeepMRMD:0;iRNA_m5C:0 53514 chr20 43355896 43355896 1 + C A COAD 43355892 + 43355872 43355912 41 AGACCCAGCGCCGCCTGTGCCTGTCCAGGCCCTGCCCACCC AGACCCAGCGCCGCCTGTGCCTGTACAGGCCCTGCCCACCC < 41bp 0.449471491951885 0.825872511347518 0.09082314 0.4921252 prediction 0.651745022695036 Functional Gain - WISP2 ENSG00000064205 CDS Human protein_coding chr20:43355892 chr20:43355896 nonsynonymous SNV 0.930 1 25 hm5C_associated_SNPs_100369 0 0 0 0 0 nucleus 0.500231636881726 0.500231643921091 0 1.40787312918889e-08 hm5C_site_53514 DeepMRMD:0;iRNA_m5C:1.40787312918889e-08 53515 chr17 14207430 14207430 1 + C A rs1052686 14207426 + 14207406 14207446 41 GCGCAGCCCGGGAGGTTCGGCTGCCGACTTGCGCCCGGGGG GCGCAGCCCGGGAGGTTCGGCTGCAGACTTGCGCCCGGGGG < 41bp 0.501442604087906 0.827313645922995 0.18480888 0.39608076 prediction 0.651742083670177 Functional Gain - MGC12916 ENSG00000266709 ncRNA_exonic Human lincRNA chr17:14207426 chr17:14207430 . . 0 25 hm5C_associated_SNPs_100370 0 0 0 0 0 unknown 0.500231640425928 0.500231643915988 0 6.98012048161445e-09 hm5C_site_53515 DeepMRMD:0;iRNA_m5C:6.98012048161445e-09 53516 chr9 107551651 107551651 1 + T G rs141566813 107551648 + 107551628 107551668 41 TAGGAGCAAGCCTAGGAAAGCAGTTGTGCAGCGCTAGGCCT TAGGAGCAAGCCTAGGAAAGCAGGTGTGCAGCGCTAGGCCT < 41bp 0.51032697813585 0.836151192229283 0.7557758 0.9285263 prediction 0.651648428186867 Functional Gain - ABCA1 ENSG00000165029 intronic Human protein_coding chr9:107551648 chr9:107551651 . . 0 24 hm5C_associated_SNPs_100371 0 0 0 0 0 cytosol 0.500231643921136 0.500231643920277 0.345501 0 hm5C_site_53516 DeepMRMD:0.345501;iRNA_m5C:0 53517 chr15 80215478 80215478 1 + C A rs561108439 80215474 + 80215454 80215494 41 CGCCCAGCCCCGCCCGGCGCCCGGCGCTCACCAGCTCTCCT CGCCCAGCCCCGCCCGGCGCCCGGAGCTCACCAGCTCTCCT < 41bp 0.493257030241522 0.825813100674689 0.86337537 0.9049472 prediction 0.651626201349378 Functional Gain - ST20-AS1 ENSG00000259642 CDS Human antisense chr15:80215474 chr15:80215478 synonymous SNV . 0 25 hm5C_associated_SNPs_100372 0 0 0 0 0 unknown 0.500266140150873 0.500232749752315 0.08314366 0 hm5C_site_53517 DeepMRMD:0.08314366;iRNA_m5C:0 53518 chr2 32503260 32503260 1 + C A rs564046880 32503256 + 32503236 32503276 41 GGGCCCGCCCCCGGCCTATGCCCCCACTAACGGGGACTTCA GGGCCCGCCCCCGGCCTATGCCCCAACTAACGGGGACTTCA < 41bp 0.465499468635571 0.825774733409526 0.03928387 0.049545974 prediction 0.651549466819052 Functional Gain - YIPF4 ENSG00000119820 CDS Human protein_coding chr2:32503256 chr2:32503260 synonymous SNV . 0 25 hm5C_associated_SNPs_100373 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53518 DeepMRMD:0;iRNA_m5C:0 53519 chr2 237489798 237489798 1 + C A DLBC 237489794 + 237489774 237489814 41 CGTTCCCTTCTCCATTATCGCTGTCTTCTACTTCCTGCTGG CGTTCCCTTCTCCATTATCGCTGTATTCTACTTCCTGCTGG < 41bp 0.452190545377925 0.825733562351495 0.64356697 0.7517529 prediction 0.65146712470299 Functional Gain - ACKR3 ENSG00000144476 CDS Human protein_coding chr2:237489794 chr2:237489798 synonymous SNV . 0 25 hm5C_associated_SNPs_100374 0 0 0 0 0 Nucleus 0.500231644060882 0.50023164392039 0.21637186 0 hm5C_site_53519 DeepMRMD:0.21637186;iRNA_m5C:0 53520 chrX 151821044 151821044 1 + C A LIHC 151821040 + 151821020 151821060 41 TGGAAGACGGAGTCAGCTCTCTCCCCATCACCCCAGCGCAG TGGAAGACGGAGTCAGCTCTCTCCACATCACCCCAGCGCAG < 41bp 0.559112503378047 0.884837860547496 0.25021237 0.91385293 prediction 0.651450714338897 Functional Gain - GABRQ ENSG00000147402 CDS Human other chrX:151821040 chrX:151821044 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_100375 0 0 0 0 1 chromatin 0.500231643921263 0.50023202149461 0.82770586 7.55146693620645e-07 hm5C_site_53520 DeepMRMD:0.82770586;iRNA_m5C:7.55146693620645e-07 53521 chr7 70800599 70800599 1 + C A LUAD 70800595 + 70800575 70800615 41 GGCGGGGTAAAGGGGGCCTTCCGGCTACTCTTTCCCCGGCT GGCGGGGTAAAGGGGGCCTTCCGGATACTCTTTCCCCGGCT < 41bp 0.519619327457872 0.845311694961603 0.9088832 0.9138401 prediction 0.651384735007462 Functional Gain - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:70800595 chr7:70800599 nonsynonymous SNV 0.969 2 25 hm5C_associated_SNPs_100376 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.00991380000000008 0 hm5C_site_53521 DeepMRMD:0.00991380000000008;iRNA_m5C:0 53522 chr17 66124336 66124336 1 + T G rs142658873 66124333 + 66124313 66124353 41 GTCTGAGGCTGCCTCCGGCTCAGTAGTCAGCTCAATGCTCA GTCTGAGGCTGCCTCCGGCTCAGGAGTCAGCTCAATGCTCA < 41bp 0.485115114708271 0.825689843160045 0.22393402 0.89756703 prediction 0.651379686320089 Functional Gain - LINC00674 ENSG00000267023 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:66124333 chr17:66124336 . . 0 24 hm5C_associated_SNPs_100377 0 0 1 0 0 unknown 0.500231643921092 0.500231643921168 0.79513406 1.52544643583497e-13 hm5C_site_53522 DeepMRMD:0.79513406;iRNA_m5C:1.52544643583497e-13 53523 chr10 47087418 47087418 1 + C A LUSC 47087414 + 47087394 47087434 41 CCTGGCCACTGGCTCACCACCGCACCATCTACACCACCTTC CCTGGCCACTGGCTCACCACCGCAACATCTACACCACCTTC < 41bp 0.433827746416284 0.825613830473676 0.12605208 0.15169498 prediction 0.651227660947351 Functional Gain - NPY4R;NPY4R2 ENSG00000204174 CDS Human protein_coding chr10:47087414 chr10:47087418 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_100378 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_53523 DeepMRMD:0;iRNA_m5C:0 53524 chr19 38865417 38865417 1 + C A rs200109220 38865413 + 38865393 38865433 41 GCCGTAAATCAGGCGGTCTGCTTGCCGCATCACGCAAGATG GCCGTAAATCAGGCGGTCTGCTTGACGCATCACGCAAGATG < 41bp 0.534354856130364 0.859941734830958 0.114412606 0.19319057 prediction 0.651173757401187 Functional Gain - PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38865413 chr19:38865417 nonsynonymous SNV 0.929 3 25 hm5C_associated_SNPs_100379 0 0 1 0 0 Ribosome 0.500231643772509 0.500231644016388 0 4.87759832523693e-10 hm5C_site_53524 DeepMRMD:0;iRNA_m5C:4.87759832523693e-10 53525 chr7 143016916 143016916 1 + C A UCEC 143016912 + 143016892 143016932 41 CATAGGGATGCCCAAGAAGACAGGCTCCAGTTCTACCGTGG CATAGGGATGCCCAAGAAGACAGGATCCAGTTCTACCGTGG < 41bp 0.544059571027403 0.869645737086643 0.57488406 0.63260454 prediction 0.651172332118479 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143016912 chr7:143016916 synonymous SNV . 0 25 hm5C_associated_SNPs_100380 0 0 0 0 2 exosome 0.500231647043495 0.500231172356469 0.11544096 0 hm5C_site_53525 DeepMRMD:0.11544096;iRNA_m5C:0 53526 chr14 77242449 77242449 1 + C A LUAD 77242445 + 77242425 77242465 41 CTGGACTTCGAGGCCGCCTACGGCCGCTGCTGGCACGTGCT CTGGACTTCGAGGCCGCCTACGGCAGCTGCTGGCACGTGCT < 41bp 0.435017691413937 0.825545963908022 0.48386845 0.8600405 prediction 0.651091927816045 Functional Gain - VASH1 ENSG00000071246 CDS Human protein_coding chr14:77242445 chr14:77242449 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_100381 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643920849 0.720081 0 hm5C_site_53526 DeepMRMD:0.720081;iRNA_m5C:0 53527 chr8 9413606 9413606 1 + C A STAD 9413602 + 9413582 9413622 41 CCAGCCTCTCCCACGGCCAGCGGCCTGGCCCCCTTCGCCTC CCAGCCTCTCCCACGGCCAGCGGCATGGCCCCCTTCGCCTC < 41bp 0.516517674011659 0.84206200277005 0.6555251 0.7156767 prediction 0.651088657516783 Functional Gain - TNKS ENSG00000173273 CDS Human protein_coding chr8:9413602 chr8:9413606 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_100382 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921193 0.1203032 2.00728322852228e-13 hm5C_site_53527 DeepMRMD:0.1203032;iRNA_m5C:2.00728322852228e-13 53528 chr19 55044979 55044979 1 + C A UCEC 55044975 + 55044955 55044995 41 TCAGGACAAGTTCTCCCTGTCAGCCTGGCCGAGCCCTGTGG TCAGGACAAGTTCTCCCTGTCAGCATGGCCGAGCCCTGTGG < 41bp 0.457524375433557 0.825520050195579 0.19803116 0.315626 prediction 0.651040100391158 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55044975 chr19:55044979 synonymous SNV . 0 25 hm5C_associated_SNPs_100383 0 0 0 0 1 Nucleus 0.500231643921092 0.500231644043596 0 2.45007791832563e-10 hm5C_site_53528 DeepMRMD:0;iRNA_m5C:2.45007791832563e-10 53529 chr1 152882428 152882428 1 + C A LUAD 152882424 + 152882404 152882444 41 GCCAGAAGGTGCCTGTCGAGCTCCCAGTGGAGGTCCCATCA GCCAGAAGGTGCCTGTCGAGCTCCAAGTGGAGGTCCCATCA < 41bp 0.566683036614671 0.892186332111068 0.22360429 0.5527092 prediction 0.651006590992795 Functional Gain - IVL ENSG00000163207 CDS Human protein_coding chr1:152882424 chr1:152882428 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_100384 0 0 0 0 0 unknown 0.500231635988565 0.500231641872963 0.1054184 1.17687946055156e-08 hm5C_site_53529 DeepMRMD:0.1054184;iRNA_m5C:1.17687946055156e-08 53530 chr17 40761777 40761777 1 + C A UCEC 40761773 + 40761753 40761793 41 GCGATGCCGAGGGAAATCATCACCCTACAGTTGGGCCAGTG GCGATGCCGAGGGAAATCATCACCATACAGTTGGGCCAGTG < 41bp 0.450861610707229 0.825454734158504 0.36674 0.24405101 prediction 0.650909468317008 Functional Gain - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40761773 chr17:40761777 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_100385 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921577 0 9.69002655892837e-13 hm5C_site_53530 DeepMRMD:0;iRNA_m5C:9.69002655892837e-13 53531 chr14 78227422 78227422 1 + C A OV 78227418 + 78227398 78227438 41 ATGAAGAAGACTGGTACTCCCAGACCCTTCCGTATCGAGGA ATGAAGAAGACTGGTACTCCCAGAACCTTCCGTATCGAGGA < 41bp 0.534101473645215 0.859538430702118 0.13820249 0.23389441 prediction 0.650873914113806 Functional Gain - C14orf178 ENSG00000197734 CDS Human protein_coding chr14:78227418 chr14:78227422 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_100386 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_53531 DeepMRMD:0;iRNA_m5C:0 53532 chr16 1838702 1838702 1 + C A LGG 1838698 + 1838678 1838718 41 AGAAGATTCTGGACGCGACGCCCGCGTGCCTCCCCTGACTA AGAAGATTCTGGACGCGACGCCCGAGTGCCTCCCCTGACTA < 41bp 0.533413049542093 0.858813469294364 0.12865847 0.30485165 prediction 0.650800839504543 Functional Gain - NUBP2 ENSG00000095906 CDS Human protein_coding chr16:1838698 chr16:1838702 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100387 0 0 1 0 0 Ribosome 0.500231643921094 0.500231643921092 0 0 hm5C_site_53532 DeepMRMD:0;iRNA_m5C:0 53533 chr16 46963938 46963938 1 + C A rs145418203 46963934 + 46963914 46963954 41 AGCTGAATCTGGTCGGTTTCCTAGCTTTTAGGTGGTAAAAG AGCTGAATCTGGTCGGTTTCCTAGATTTTAGGTGGTAAAAG < 41bp 0.467968889145861 0.825390056813454 0.68653506 0.6907639 prediction 0.650780113626909 Functional Gain - GPT2 ENSG00000166123 UTR3 Human protein_coding chr16:46963934 chr16:46963938 . . 0 25 hm5C_associated_SNPs_100388 0 0 1 0 0 Ribosome 0.500231643917412 0.500231643921093 0.00845768000000002 7.36211092089434e-12 hm5C_site_53533 DeepMRMD:0.00845768000000002;iRNA_m5C:7.36211092089434e-12 53534 chr22 25289496 25289496 1 + C A rs564623600 25289492 + 25289472 25289512 41 GAGGGAGCGGGAGTCCCATGCGGCCGCCCTGGCCAAATGCT GAGGGAGCGGGAGTCCCATGCGGCAGCCCTGGCCAAATGCT < 41bp 0.445190813614501 0.825364193157719 0.8954022 0.89508295 prediction 0.650728386315438 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25289492 chr22:25289496 synonymous SNV . 0 25 hm5C_associated_SNPs_100389 0 0 0 0 2 exosome 0.50023164391711 0.500231643921092 0 7.96451793405595e-12 hm5C_site_53534 DeepMRMD:0;iRNA_m5C:7.96451793405595e-12 53535 chr7 134916782 134916782 1 + C A COAD 134916778 + 134916758 134916798 41 CTCTTTTTCAATCAAGAAATCAGGCTGTGGCAGGTAAATAA CTCTTTTTCAATCAAGAAATCAGGATGTGGCAGGTAAATAA < 41bp 0.515722325959516 0.84106830602165 0.5366433 0.7901075 prediction 0.650691960124268 Functional Gain - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134916778 chr7:134916782 nonsynonymous SNV 0.124 2 25 hm5C_associated_SNPs_100390 0 0 0 0 1 exosome 0.500231567779975 0.500230878740935 0.5069284 0 hm5C_site_53535 DeepMRMD:0.5069284;iRNA_m5C:0 53536 chr18 76753665 76753665 1 + C A LUSC 76753661 + 76753641 76753681 41 CCGCTCCCCGCAGAGGCCCTCGCCCGCCTCCAGCGAGTGCG CCGCTCCCCGCAGAGGCCCTCGCCAGCCTCCAGCGAGTGCG < 41bp 0.453472911637294 0.82532691033544 0.39803505 0.7528498 prediction 0.650653820670881 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76753661 chr18:76753665 synonymous SNV . 0 25 hm5C_associated_SNPs_100391 0 0 0 0 0 exosome 0.500231643921092 0.500231643874044 0.5056996 0 hm5C_site_53536 DeepMRMD:0.5056996;iRNA_m5C:0 53537 chrX 86872977 86872977 1 + C A LUAD 86872973 + 86872953 86872993 41 AAGATACCATTGAAAGTTTGCTGGCTGCAGCTTGTCTTCTG AAGATACCATTGAAAGTTTGCTGGATGCAGCTTGTCTTCTG < 41bp 0.452484895835983 0.825319986295473 0.3239229 0.40495557 prediction 0.650639972590946 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86872973 chrX:86872977 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_100392 0 0 0 0 1 chromatin 0.500127104353429 0.50023164232855 0 0.000209075950242887 hm5C_site_53537 DeepMRMD:0;iRNA_m5C:0.000209075950242887 53538 chr1 16375713 16375713 1 + C A UCEC 16375709 + 16375689 16375729 41 ACCTGCGGGGCCTTCATGTTCCGGCTCCTGGCGGTCTTCAA ACCTGCGGGGCCTTCATGTTCCGGATCCTGGCGGTCTTCAA < 41bp 0.544865713094511 0.870166055715741 0.25875944 0.43455246 prediction 0.650600685242459 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16375709 chr1:16375713 nonsynonymous SNV 0.220 4 25 hm5C_associated_SNPs_100393 0 0 0 0 1 exosome 0.500231643921102 0.500231643921804 0 1.40376599233605e-12 hm5C_site_53538 DeepMRMD:0;iRNA_m5C:1.40376599233605e-12 53539 chr12 104995722 104995722 1 + C A LUSC 104995718 + 104995698 104995738 41 CCCTTTGGTGTGGACATCTGCTGCCGGAAGGGGTCCCGAAG CCCTTTGGTGTGGACATCTGCTGCAGGAAGGGGTCCCGAAG < 41bp 0.433666547417143 0.82528232937639 0.28320265 0.37525755 prediction 0.650564658752781 Functional Gain - CHST11 ENSG00000171310 CDS Human protein_coding chr12:104995718 chr12:104995722 synonymous SNV . 0 25 hm5C_associated_SNPs_100394 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_53539 DeepMRMD:0;iRNA_m5C:0 53540 chrX 65420462 65420462 1 + C A LUSC 65420458 + 65420438 65420478 41 ACAGTGGCCTGGCACCTGCTCGGCCTGGGCACAGAGACTGA ACAGTGGCCTGGCACCTGCTCGGCATGGGCACAGAGACTGA < 41bp 0.433508161252823 0.82527226770934 0.64808315 0.68841594 prediction 0.65054453541868 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65420458 chrX:65420462 nonsynonymous SNV 0.964 2 25 hm5C_associated_SNPs_100395 0 0 1 0 1 Nucleus 0.50023164392114 0.500231643921092 0.0806655799999998 0 hm5C_site_53540 DeepMRMD:0.0806655799999998;iRNA_m5C:0 53541 chr5 132149600 132149600 1 + C A rs376888433 132149596 + 132149576 132149616 41 CCGAGCCCGCACCCTTCGGCCCCCCGGGGGCAGCGGCCCAG CCGAGCCCGCACCCTTCGGCCCCCAGGGGGCAGCGGCCCAG < 41bp 0.520770899737341 0.846039546195475 0.37727925 0.65604997 prediction 0.650537292916267 Functional Gain - SOWAHA ENSG00000198944 CDS Human protein_coding chr5:132149596 chr5:132149600 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100396 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.31209994 0 hm5C_site_53541 DeepMRMD:0.31209994;iRNA_m5C:0 53542 chr22 29442723 29442723 1 + C A HNSC 29442719 + 29442699 29442739 41 TGCAGAATTCCATGAACAGGCTGGCTGTGCAGGCTCTAGAG TGCAGAATTCCATGAACAGGCTGGATGTGCAGGCTCTAGAG < 41bp 0.437187849246306 0.825262065721317 0.15879026 0.20110977 prediction 0.650524131442634 Functional Gain - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29442719 chr22:29442723 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_100397 0 0 1 0 1 Ribosome 0.500231640773061 0.500231618984551 0 0 hm5C_site_53542 DeepMRMD:0;iRNA_m5C:0 53543 chr1 152733183 152733183 1 + C A rs111350576 152733179 + 152733159 152733199 41 CTCCTGCCCTGAGCTGAGGCCACACGTAGAGCCACGTCCAC CTCCTGCCCTGAGCTGAGGCCACAAGTAGAGCCACGTCCAC < 41bp 0.45547320978559 0.825256879482176 0.6329986 0.83432794 prediction 0.650513758964352 Functional Gain - KPRP ENSG00000203786 CDS Human protein_coding chr1:152733179 chr1:152733183 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100398 0 0 0 0 0 exosome 0.500167183659136 0.500231645119518 0.40265868 0.000128922920765051 hm5C_site_53543 DeepMRMD:0.40265868;iRNA_m5C:0.000128922920765051 53544 chr11 55587828 55587828 1 + C A PRAD 55587824 + 55587804 55587844 41 TGGGCGCCGCAAAGCCTTCTCCACCTGTGCCTCCCACCTGA TGGGCGCCGCAAAGCCTTCTCCACATGTGCCTCCCACCTGA < 41bp 0.537738274871931 0.8629790536946 0.07558784 0.35273808 prediction 0.650481557645339 Functional Gain - OR5D18 ENSG00000186119 CDS Human protein_coding chr11:55587824 chr11:55587828 synonymous SNV . 0 25 hm5C_associated_SNPs_100399 0 0 0 0 0 unknown 0.500231644027645 0.500231660285542 0 3.25157929470521e-08 hm5C_site_53544 DeepMRMD:0;iRNA_m5C:3.25157929470521e-08 53545 chr17 38100949 38100949 1 + C A rs558114586 38100945 + 38100925 38100965 41 AAGCGGGCCCCAGTGCTGCCCGTGCGTTCCGAGGACTCCTC AAGCGGGCCCCAGTGCTGCCCGTGAGTTCCGAGGACTCCTC < 41bp 0.534137621580009 0.859333903950108 0.33304456 0.3432634 prediction 0.650392564740198 Functional Gain - LRRC3C ENSG00000204913 CDS Human protein_coding chr17:38100945 chr17:38100949 nonsynonymous SNV 0.191 0 25 hm5C_associated_SNPs_100400 0 0 0 0 0 exosome 0.500231645212578 0.500231643972529 0 0 hm5C_site_53545 DeepMRMD:0;iRNA_m5C:0 53546 chr3 119101209 119101209 1 + C A STAD 119101205 + 119101185 119101225 41 AGCAGCAAGACCAACATGCACGCCCGGAACCTGGCCCTGGT AGCAGCAAGACCAACATGCACGCCAGGAACCTGGCCCTGGT < 41bp 0.422863265947425 0.825180015987496 0.10945484 0.23168382 prediction 0.650360031974992 Functional Gain - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119101205 chr3:119101209 synonymous SNV . 0 25 hm5C_associated_SNPs_100401 0 0 0 0 2 cytosol 0.500231643921093 0.500231643921073 0 0 hm5C_site_53546 DeepMRMD:0;iRNA_m5C:0 53547 chr16 11001643 11001643 1 + C A LUSC 11001639 + 11001619 11001659 41 TTCTGGCTGGGCTGATCTTCCAGCCTCCCGCCCGCTGCCTG TTCTGGCTGGGCTGATCTTCCAGCATCCCGCCCGCTGCCTG < 41bp 0.550593896210312 0.875763092367267 0.6729222 0.5552245 prediction 0.650338392313909 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11001639 chr16:11001643 nonsynonymous SNV 0.187 1 25 hm5C_associated_SNPs_100402 0 0 0 0 0 Nucleus 0.500231643922424 0.500231643921093 0 0 hm5C_site_53547 DeepMRMD:0;iRNA_m5C:0 53548 chr11 60695301 60695301 1 + C A rs575123 60695297 + 60695277 60695317 41 CCGGCTCCATGCCACACACCCTGCCGGCACTGCTCACCAAG CCGGCTCCATGCCACACACCCTGCAGGCACTGCTCACCAAG < 41bp 0.436820624147833 0.825149004201382 0.11063364 0.24876988 prediction 0.650298008402764 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60695297 chr11:60695301 synonymous SNV . 0 25 hm5C_associated_SNPs_100403 0 0 0 0 1 Ribosome 0.500231644878946 0.500231643870948 0 0 hm5C_site_53548 DeepMRMD:0;iRNA_m5C:0 53549 chr17 6930303 6930303 1 + C A LUSC 6930299 + 6930279 6930319 41 TGCGGGCGCACGTGCTGATCCACACCGGGGAGAAGCCCTAC TGCGGGCGCACGTGCTGATCCACAACGGGGAGAAGCCCTAC < 41bp 0.565182292699556 0.890327023363933 0.32862908 0.34262887 prediction 0.650289461328755 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6930299 chr17:6930303 nonsynonymous SNV 0.852 4 25 hm5C_associated_SNPs_100404 0 0 0 0 1 Endoplasmic reticulum 0.500231425027143 0.500220108707449 0 0 hm5C_site_53549 DeepMRMD:0;iRNA_m5C:0 53550 chr11 48510533 48510533 1 + C A UCEC 48510529 + 48510509 48510549 41 ACCAATGTACTTCTTTCTTGCTGGCTTATCATTTATAGATA ACCAATGTACTTCTTTCTTGCTGGATTATCATTTATAGATA < 41bp 0.527882931732686 0.853007725462392 0.027518034 0.06139347 prediction 0.650249587459412 Functional Gain - OR4A47 ENSG00000237388 CDS Human protein_coding chr11:48510529 chr11:48510533 synonymous SNV . 0 25 hm5C_associated_SNPs_100405 0 0 0 0 0 unknown 0.500481674412896 0.50023272084067 0 0 hm5C_site_53550 DeepMRMD:0;iRNA_m5C:0 53551 chr18 8831778 8831778 1 + C A MESO 8831774 + 8831754 8831794 41 GGAGCATGGTGGCGAGGAGCCGCCCGAGGAGCAGCCACACC GGAGCATGGTGGCGAGGAGCCGCCAGAGGAGCAGCCACACC < 41bp 0.562000552640393 0.887112481758571 0.20134306 0.85020316 prediction 0.650223858236356 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8831774 chr18:8831778 synonymous SNV . 0 25 hm5C_associated_SNPs_100406 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643903738 0.70040632 0 hm5C_site_53551 DeepMRMD:0.70040632;iRNA_m5C:0 53552 chr17 39240853 39240853 1 + C A LUAD 39240849 + 39240829 39240869 41 TCTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCA TCTGTGGCCGAGTCTCCTGCCACAACACTTGCTATCGCCCA < 41bp 0.475694969468501 0.82509863848793 0.13633433 0.14907429 prediction 0.65019727697586 Functional Gain - KRTAP4-7 ENSG00000240871 CDS Human protein_coding chr17:39240849 chr17:39240853 nonsynonymous SNV 0.780 1 25 hm5C_associated_SNPs_100407 0 0 0 0 0 unknown 0.500231668046134 0.500231657440642 0 0 hm5C_site_53552 DeepMRMD:0;iRNA_m5C:0 53553 chr1 20879817 20879817 1 + C A rs201620424 20879813 + 20879793 20879833 41 GATGAAGCTGACGCTGGGGCCGCACGGCATCCGCATGCAGC GATGAAGCTGACGCTGGGGCCGCAAGGCATCCGCATGCAGC < 41bp 0.5109970877713 0.836063095943658 0.06444207 0.21591258 prediction 0.650132016344716 Functional Gain - FAM43B ENSG00000183114 CDS Human protein_coding chr1:20879813 chr1:20879817 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_100408 0 0 0 0 0 exosome 0.500219910902908 0.500199790544837 0 0 hm5C_site_53553 DeepMRMD:0;iRNA_m5C:0 53554 chr2 169940017 169940017 1 + T G OV 169940014 + 169939994 169940034 41 GGGAGAGTTATTAATGTCTCCAGTGTTGGAGGTCGCCTTGC GGGAGAGTTATTAATGTCTCCAGGGTTGGAGGTCGCCTTGC < 41bp 0.540502724101817 0.865563320090717 0.21683222 0.9271653 prediction 0.6501211919778 Functional Gain - DHRS9 ENSG00000073737 CDS Human protein_coding chr2:169940014 chr2:169940017 nonsynonymous SNV 0.974 5 24 hm5C_associated_SNPs_100409 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.8543306 0 hm5C_site_53554 DeepMRMD:0.8543306;iRNA_m5C:0 53555 chr7 1132295 1132295 1 + C A UCEC 1132291 + 1132271 1132311 41 CCCCTCACGGGCCACATTGTCAACCTCGCCGCCTTCTCCAA CCCCTCACGGGCCACATTGTCAACATCGCCGCCTTCTCCAA < 41bp 0.433644923743032 0.824991491555947 0.36029547 0.24599344 prediction 0.649982983111894 Functional Gain - GPER1 ENSG00000164850 CDS Human protein_coding chr7:1132291 chr7:1132295 nonsynonymous SNV 0.248 2 25 hm5C_associated_SNPs_100410 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_53555 DeepMRMD:0;iRNA_m5C:0 53556 chr10 95553033 95553033 1 + C A UCEC 95553029 + 95553009 95553049 41 ATGAGTATGTAGTCATCGCTCAGCCTTTTACTGGAAAATGC ATGAGTATGTAGTCATCGCTCAGCATTTTACTGGAAAATGC < 41bp 0.441433955759891 0.824990386054009 0.18677488 0.08554888 prediction 0.649980772108017 Functional Gain - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95553029 chr10:95553033 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_100411 0 0 0 1 2 exosome 0.500231643860577 0.500231644895328 0 2.06950345749135e-09 hm5C_site_53556 DeepMRMD:0;iRNA_m5C:2.06950345749135e-09 53557 chr16 614874 614874 1 + C A LUSC 614870 + 614850 614890 41 AGCGCCTGGGACAGTTGGGGCCCGCGGGGGGCCTGGCCCCG AGCGCCTGGGACAGTTGGGGCCCGAGGGGGGCCTGGCCCCG < 41bp 0.472910754001592 0.824931137604751 0.8561251 0.86734575 prediction 0.649862275209502 Functional Gain - PRR35 ENSG00000161992 CDS Human protein_coding chr16:614870 chr16:614874 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_100412 0 0 0 0 0 exosome 0.500231643921187 0.500231643924275 0.0224413000000001 6.1775029536193e-12 hm5C_site_53557 DeepMRMD:0.0224413000000001;iRNA_m5C:6.1775029536193e-12 53558 chr19 50926238 50926238 1 + C A TGCT 50926234 + 50926214 50926254 41 GGGAACCTCGAACTGGCCCCCAGCCTGGAGGCCCCGGGGCC GGGAACCTCGAACTGGCCCCCAGCATGGAGGCCCCGGGGCC < 41bp 0.435959108742253 0.824926888629379 0.26360667 0.50437593 prediction 0.649853777258758 Functional Gain - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926234 chr19:50926238 nonsynonymous SNV 0.886 0 25 hm5C_associated_SNPs_100413 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.00875186000000006 0 hm5C_site_53558 DeepMRMD:0.00875186000000006;iRNA_m5C:0 53559 chr9 131584613 131584613 1 + G T SARC 131584617 - 131584597 131584637 41 CTTTACGTAGGATTTCCCATCAGCCTCTGTCCTGTGGGCAG CTTTACGTAGGATTTCCCATCAGCATCTGTCCTGTGGGCAG < 41bp 0.447688522147259 0.824926559115493 0.28474784 0.4124529 prediction 0.649853118230987 Functional Gain - ENDOG ENSG00000167136 CDS Human protein_coding chr9:131584617 chr9:131584613 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_100414 0 0 1 1 0 Cytosol 0.500231643921092 0.50023164402157 0 2.00955696527672e-10 hm5C_site_53559 DeepMRMD:0;iRNA_m5C:2.00955696527672e-10 53560 chr9 119461612 119461612 1 + C A UCEC 119461608 + 119461588 119461628 41 GCTGAGGGCACCGTCTACTTCACCCAGGGCTTAGGCCTCAA GCTGAGGGCACCGTCTACTTCACCAAGGGCTTAGGCCTCAA < 41bp 0.564584379877523 0.889466640155584 0.07726449 0.5942224 prediction 0.649764520556122 Functional Gain - TRIM32 ENSG00000119401 CDS Human protein_coding chr9:119461608 chr9:119461612 nonsynonymous SNV 0.976 3 25 hm5C_associated_SNPs_100415 0 0 1 0 0 chromatin 0.500231643921092 0.50023164512933 0.1884448 2.41647546417312e-09 hm5C_site_53560 DeepMRMD:0.1884448;iRNA_m5C:2.41647546417312e-09 53561 chr10 119003505 119003505 1 + T G UCEC 119003502 + 119003482 119003522 41 TCCCCATCATCCCAAGTTATCTGTACAGCATTAAGCATGAG TCCCCATCATCCCAAGTTATCTGGACAGCATTAAGCATGAG < 41bp 0.517034772609046 0.841905994560176 0.07707518 0.16596788 prediction 0.649742443902261 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119003502 chr10:119003505 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_100416 0 0 0 0 1 nucleus 0.500231228020323 0.500231221858272 0 0 hm5C_site_53561 DeepMRMD:0;iRNA_m5C:0 53562 chr20 55012398 55012398 1 + C A HNSC 55012394 + 55012374 55012414 41 CTGCCAACCGCCTCCAAATCCTCACGGAGGTCGCTGCAGAC CTGCCAACCGCCTCCAAATCCTCAAGGAGGTCGCTGCAGAC < 41bp 0.573191092687447 0.898045490068314 0.16635674 0.28956595 prediction 0.649708794761733 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55012394 chr20:55012398 nonsynonymous SNV 0.143 0 25 hm5C_associated_SNPs_100417 0 0 0 0 1 chromatin 0.500230867582436 0.50023166783258 0 1.60050028985559e-06 hm5C_site_53562 DeepMRMD:0;iRNA_m5C:1.60050028985559e-06 53563 chr17 39388991 39388991 1 + T G THCA 39388988 + 39388968 39389008 41 AGCCTTCCTGCTGTAGCACACCCTGCTGCCAGCCCACATGC AGCCTTCCTGCTGTAGCACACCCGGCTGCCAGCCCACATGC < 41bp 0.543250307236585 0.868100898619005 0.07654634 0.40134424 prediction 0.64970118276484 Functional Gain - KRTAP9-3 ENSG00000204873 CDS Human protein_coding chr17:39388988 chr17:39388991 nonsynonymous SNV 0.640 1 24 hm5C_associated_SNPs_100418 0 0 0 0 0 unknown 0.500231632477778 0.500231643921092 0 2.28866294804675e-08 hm5C_site_53563 DeepMRMD:0;iRNA_m5C:2.28866294804675e-08 53564 chr8 144297310 144297310 1 + C A LUSC 144297306 + 144297286 144297326 41 ACAGGCAAGGGGGCAGGCGGCCCCCGGGGCAGCTCCGAAAC ACAGGCAAGGGGGCAGGCGGCCCCAGGGGCAGCTCCGAAAC < 41bp 0.462040655976052 0.824848937406521 0.373172 0.7688746 prediction 0.649697874813042 Functional Gain - GPIHBP1 ENSG00000182851 CDS Human other chr8:144297306 chr8:144297310 synonymous SNV . 0 25 hm5C_associated_SNPs_100419 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.5377492 0 hm5C_site_53564 DeepMRMD:0.5377492;iRNA_m5C:0 53565 chr17 29159410 29159410 1 + C A THCA 29159406 + 29159386 29159426 41 GGCGGCTGCAGCTGCTCCGCCTCCCGTGAAGGACTGCGAGA GGCGGCTGCAGCTGCTCCGCCTCCAGTGAAGGACTGCGAGA < 41bp 0.44559099175994 0.824777500934861 0.22357684 0.9359391 prediction 0.649555001869722 Functional Gain - ATAD5 ENSG00000176208 CDS Human protein_coding chr17:29159406 chr17:29159410 synonymous SNV . 0 25 hm5C_associated_SNPs_100420 0 0 1 0 1 chromatin 0.500231868325117 0.50032673126008 0.8718782 0.000189725869925272 hm5C_site_53565 DeepMRMD:0.8718782;iRNA_m5C:0.000189725869925272 53566 chr7 98894432 98894432 1 + C A rs538846864 98894428 + 98894408 98894448 41 TTGCAGGTGGAAGTGGACAGCTCGCAGAAGGAGTGCCGCAT TTGCAGGTGGAAGTGGACAGCTCGAAGAAGGAGTGCCGCAT < 41bp 0.460650433586655 0.824745907453686 0.08880699 0.16551897 prediction 0.649491814907371 Functional Gain - MYH16 ENSG00000002079 ncRNA_exonic Human transcribed_unitary_pseudogene chr7:98894428 chr7:98894432 . . 0 25 hm5C_associated_SNPs_100421 0 0 0 0 0 unknown 0.500231643918953 0.500231643921092 0 4.27791135848565e-12 hm5C_site_53566 DeepMRMD:0;iRNA_m5C:4.27791135848565e-12 53567 chr11 114112918 114112918 1 + T G STAD 114112915 + 114112895 114112935 41 ACATGGCCGTCTTCTGTCTGCTGTGTGGGAAGCGCTTCCAG ACATGGCCGTCTTCTGTCTGCTGGGTGGGAAGCGCTTCCAG < 41bp 0.536494819951366 0.861225581767748 0.40119788 0.8411231 prediction 0.649461523632764 Functional Gain - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:114112915 chr11:114112918 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_100422 0 0 0 0 1 Nucleus 0.500231643921093 0.500231643921103 0.6822462 2.1316282072803e-14 hm5C_site_53567 DeepMRMD:0.6822462;iRNA_m5C:2.1316282072803e-14 53568 chr9 107457720 107457720 1 + C A LIHC 107457716 + 107457696 107457736 41 GCTGTAAAGAAAGTCCTGAGCAGACATCTGCATTTATTGAA GCTGTAAAGAAAGTCCTGAGCAGAAATCTGCATTTATTGAA < 41bp 0.495703025912315 0.824710563597643 0.058106422 0.09334445 prediction 0.649421127195285 Functional Gain - OR13D1 ENSG00000179055 CDS Human protein_coding chr9:107457716 chr9:107457720 nonsynonymous SNV 0.016 0 25 hm5C_associated_SNPs_100423 0 0 0 0 0 unknown 0.500233661838015 0.500231643946827 0 0 hm5C_site_53568 DeepMRMD:0;iRNA_m5C:0 53569 chr3 112992155 112992155 1 + C A LUAD 112992151 + 112992131 112992171 41 GCCGAGAACGAGGTTGGGAGCGCCCATGCCGTAGTCCAGCT GCCGAGAACGAGGTTGGGAGCGCCAATGCCGTAGTCCAGCT < 41bp 0.56074395573356 0.885444372094443 0.369435 0.43764555 prediction 0.649400832721766 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112992151 chr3:112992155 nonsynonymous SNV 0.053 2 25 hm5C_associated_SNPs_100424 0 0 1 0 1 nucleoplasm 0.50023160084983 0.500231399091279 0 0 hm5C_site_53569 DeepMRMD:0;iRNA_m5C:0 53570 chr20 31811751 31811751 1 + C A HNSC 31811747 + 31811727 31811767 41 CTAATCAGCGGCAGGAAACACCAGCAGCAGCAAGAGAGCAG CTAATCAGCGGCAGGAAACACCAGAAGCAGCAAGAGAGCAG < 41bp 0.445771125302793 0.824676665723022 0.43113667 0.7168874 prediction 0.649353331446044 Functional Gain - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31811747 chr20:31811751 nonsynonymous SNV 0.083 0 25 hm5C_associated_SNPs_100425 0 0 0 0 1 unknown 0.500231801505623 0.500231577300035 0.4337748 0 hm5C_site_53570 DeepMRMD:0.4337748;iRNA_m5C:0 53571 chr1 22150248 22150248 1 + C A rs541223186 22150244 + 22150224 22150264 41 CTGGGTCAGGCCCCTTTCCACAAACTTCCTGGTCCTCCCCG CTGGGTCAGGCCCCTTTCCACAAAATTCCTGGTCCTCCCCG < 41bp 0.503583411000511 0.828227534461477 0.105794996 0.16030967 prediction 0.649288246921933 Functional Gain - LDLRAD2 ENSG00000187942 UTR3 Human protein_coding chr1:22150244 chr1:22150248 . . 0 25 hm5C_associated_SNPs_100426 0 0 0 0 0 chromatin 0.500231643921093 0.500231643921092 0 0 hm5C_site_53571 DeepMRMD:0;iRNA_m5C:0 53572 chr9 134106058 134106058 1 + C A UCEC 134106054 + 134106034 134106074 41 ACACCACATCCTTCGGCACGCTCGCGAGTCAGAATGCCCCC ACACCACATCCTTCGGCACGCTCGAGAGTCAGAATGCCCCC < 41bp 0.442762420604738 0.824640596367577 0.24022624 0.15363848 prediction 0.649281192735153 Functional Gain - NUP214 ENSG00000126883 CDS Human protein_coding chr9:134106054 chr9:134106058 nonsynonymous SNV 0.471 3 25 hm5C_associated_SNPs_100427 0 0 0 0 2 Cytosol 0.500206959016635 0.499804926493051 0 0 hm5C_site_53572 DeepMRMD:0;iRNA_m5C:0 53573 chr13 28367966 28367966 1 + C A LUSC 28367962 + 28367942 28367982 41 GGTGCCGGTGGTGGCGGGAGCGCACCGCAAGGCTGCAAGTG GGTGCCGGTGGTGGCGGGAGCGCAACGCAAGGCTGCAAGTG < 41bp 0.531821103909662 0.856457766476939 0.8849369 0.902556 prediction 0.649273325134554 Functional Gain - GSX1 ENSG00000169840 CDS Human protein_coding chr13:28367962 chr13:28367966 nonsynonymous SNV 0.650 1 25 hm5C_associated_SNPs_100428 0 0 0 0 0 unknown 0.500231643920951 0.500231853523403 0.0352382 4.19204904344994e-07 hm5C_site_53573 DeepMRMD:0.0352382;iRNA_m5C:4.19204904344994e-07 53574 chr11 44081447 44081447 1 + T G OV 44081444 + 44081424 44081464 41 AGGAGGCTTTGATAGTGAAGCAGTTGGAGGATGCAATGAGG AGGAGGCTTTGATAGTGAAGCAGGTGGAGGATGCAATGAGG < 41bp 0.464278467269663 0.824625272247907 0.4684314 0.8468557 prediction 0.649250544495814 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44081444 chr11:44081447 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_100429 0 0 0 0 1 Exosome 0.500231643921092 0.500231643950367 0.6937114 5.8549387560447e-11 hm5C_site_53574 DeepMRMD:0.6937114;iRNA_m5C:5.8549387560447e-11 53575 chr14 24530854 24530854 1 + C A ESCA 24530850 + 24530830 24530870 41 TCCGAGGGGCACTGCTGGAGCAAGCAGGACAGGACATTCAG TCCGAGGGGCACTGCTGGAGCAAGAAGGACAGGACATTCAG < 41bp 0.452107850824699 0.824516616034096 0.3668234 0.5671498 prediction 0.649033232068191 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24530850 chr14:24530854 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_100430 0 0 0 0 1 Endoplasmic reticulum 0.500231643921155 0.500231643920859 0.1342996 0 hm5C_site_53575 DeepMRMD:0.1342996;iRNA_m5C:0 53576 chr11 197587 197587 1 + C A SARC 197583 + 197563 197603 41 TTCATGAAGCACACGCCCACCAAGCTGCGTGCACCGGCCTA TTCATGAAGCACACGCCCACCAAGATGCGTGCACCGGCCTA < 41bp 0.549073995935348 0.873563367099103 0.14178085 0.22197926 prediction 0.64897874232751 Functional Gain - ODF3 ENSG00000177947 CDS Human protein_coding chr11:197583 chr11:197587 nonsynonymous SNV 0.378 0 25 hm5C_associated_SNPs_100431 0 0 0 0 1 exosome 0.500231643982488 0.500231644063228 0 1.61479496441075e-10 hm5C_site_53576 DeepMRMD:0;iRNA_m5C:1.61479496441075e-10 53577 chr12 49951310 49951310 1 + T G BRCA 49951307 + 49951287 49951327 41 CTGCAGCCTCTGTGTGTGGACACTGGGGCATCCTCCTACTG CTGCAGCCTCTGTGTGTGGACACGGGGGCATCCTCCTACTG < 41bp 0.453841951330234 0.824486115086969 0.5176203 0.8755098 prediction 0.648972230173938 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49951307 chr12:49951310 synonymous SNV . 0 24 hm5C_associated_SNPs_100432 0 0 0 0 0 chromatin 0.500229876499132 0.500231426487237 0.715779 3.09997620884239e-06 hm5C_site_53577 DeepMRMD:0.715779;iRNA_m5C:3.09997620884239e-06 53578 chrX 140993900 140993900 1 + T G rs201460105 140993897 + 140993877 140993917 41 CCAGTCTCCTCTCCAGATTCCTGTGAGCCCCTCCTCCTCCT CCAGTCTCCTCTCCAGATTCCTGGGAGCCCCTCCTCCTCCT < 41bp 0.449978377802095 0.824485518205903 0.08225876 0.9339744 prediction 0.648971036411807 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993897 chrX:140993900 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_100433 0 0 0 0 0 exosome 0.500231643990795 0.500231643921092 0.8679488 0 hm5C_site_53578 DeepMRMD:0.8679488;iRNA_m5C:0 53579 chr15 65153700 65153700 1 + C A UCEC 65153696 + 65153676 65153716 41 GTAAAGGTGGACAAGAGCTGCGCCCTGGAGCATGTGACACG GTAAAGGTGGACAAGAGCTGCGCCATGGAGCATGTGACACG < 41bp 0.422354926185789 0.82447800351698 0.046762675 0.27669907 prediction 0.648956007033959 Functional Gain - PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65153696 chr15:65153700 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100434 0 0 1 0 2 chromatin 0.500231640501148 0.498563639879187 0 0 hm5C_site_53579 DeepMRMD:0;iRNA_m5C:0 53580 chr2 25042469 25042469 1 + C A rs78061613 25042465 + 25042445 25042485 41 CCTCCACAGTCCCGGAAAGCCCAGCGGCAAAGGCAGCTTTG CCTCCACAGTCCCGGAAAGCCCAGAGGCAAAGGCAGCTTTG < 41bp 0.480944761261893 0.824476650484916 0.6703849 0.7986218 prediction 0.648953300969833 Functional Gain - ADCY3;CENPO ENSG00000138031;ENSG00000138092 UTR3 Human other chr2:25042465 chr2:25042469 . . 0 25 hm5C_associated_SNPs_100435 0 0 1 1 0 unknown 0.500231637459248 0.500231641189749 0.2564738 7.46100181636677e-09 hm5C_site_53580 DeepMRMD:0.2564738;iRNA_m5C:7.46100181636677e-09 53581 chr16 2259370 2259370 1 + G T SKCM 2259374 - 2259354 2259394 41 TGTCGGTCTGCTTTTATTACCTCCCAGACTGAGCCCCCGAC TGTCGGTCTGCTTTTATTACCTCCAAGACTGAGCCCCCGAC < 41bp 0.430684765434599 0.824469422232243 0.14667252 0.96353674 prediction 0.648938844464487 Functional Gain - BRICD5 ENSG00000182685 CDS Human protein_coding chr16:2259374 chr16:2259370 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_100436 0 0 1 0 1 exosome 0.500231643921092 0.500231643921092 0.92707348 0 hm5C_site_53581 DeepMRMD:0.92707348;iRNA_m5C:0 53582 chr9 90500970 90500970 1 + C A ACC 90500966 + 90500946 90500986 41 CCCCACCTTTGGCTGAGATCCAGACCCAGGCCCACCTCTCA CCCCACCTTTGGCTGAGATCCAGAACCAGGCCCACCTCTCA < 41bp 0.462861982778969 0.824460214632327 0.21267092 0.14410883 prediction 0.648920429264653 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90500966 chr9:90500970 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_100437 0 0 0 0 0 exosome 0.500231651901822 0.500231643921092 0 0 hm5C_site_53582 DeepMRMD:0;iRNA_m5C:0 53583 chr19 15905126 15905126 1 + C A rs185581143 15905122 + 15905102 15905142 41 CTGGCCGACCTGCTGTCCACCCAGCGCTCCATCGCCTTCCT CTGGCCGACCTGCTGTCCACCCAGAGCTCCATCGCCTTCCT < 41bp 0.514425266787383 0.838879259982694 0.24395654 0.49158835 prediction 0.648907986390622 Functional Gain - OR10H5 ENSG00000172519 CDS Human protein_coding chr19:15905122 chr19:15905126 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_100438 0 0 0 0 0 unknown 0.500231647123351 0.500231643772142 0 0 hm5C_site_53583 DeepMRMD:0;iRNA_m5C:0 53584 chr15 89859994 89859994 1 + C A rs3087374 89859990 + 89859970 89860010 41 CTCCAGGCAGTGCTATGGTCCAGGCTGGCTTCGTTTTTCCA CTCCAGGCAGTGCTATGGTCCAGGATGGCTTCGTTTTTCCA < 41bp 0.512718538180009 0.837167668802986 0.45104054 0.6658772 prediction 0.648898261245953 Functional Gain - POLG ENSG00000140521 CDS Human protein_coding chr15:89859990 chr15:89859994 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_100439 4 0 1 0 0 Ribosome 0.500231643921911 0.500231643921092 0.3317544 0 hm5C_site_53584 DeepMRMD:0.3317544;iRNA_m5C:0 Mitochondrial diseases Mitochondrial diseases 53585 chr14 24634093 24634093 1 + C A UCEC 24634089 + 24634069 24634109 41 CCTGGAATGCACCCCAGGCTCCACCTGGGCCAGGCCCGCAT CCTGGAATGCACCCCAGGCTCCACATGGGCCAGGCCCGCAT < 41bp 0.439505569692691 0.824394741911585 0.071341366 0.12081757 prediction 0.64878948382317 Functional Gain - IRF9 ENSG00000213928 CDS Human protein_coding chr14:24634089 chr14:24634093 nonsynonymous SNV 0.759 3 25 hm5C_associated_SNPs_100440 0 0 1 0 1 Cytosol 0.500231643921095 0.500231643989887 0 1.37583500148253e-10 hm5C_site_53585 DeepMRMD:0;iRNA_m5C:1.37583500148253e-10 53586 chr5 176732933 176732933 1 + G T HNSC 176732937 - 176732917 176732957 41 CTAGAGGAGACCCAGGCTTCCCGGCGGATTTCAGTCCAGCC CTAGAGGAGACCCAGGCTTCCCGGAGGATTTCAGTCCAGCC < 41bp 0.490666541690594 0.824375362708288 0.8832749 0.9004489 prediction 0.648750725416577 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176732937 chr5:176732933 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_100441 0 0 0 2 0 Cytosol 0.500231635115572 0.500231643921072 0.034348 1.76109995475571e-08 hm5C_site_53586 DeepMRMD:0.034348;iRNA_m5C:1.76109995475571e-08 53587 chr1 849575 849575 1 + C A rs553506831 849571 + 849551 849591 41 GAACAGCAGGGACCTGACGGCAGCCCCCGCACCCCTCCCTG GAACAGCAGGGACCTGACGGCAGCACCCGCACCCCTCCCTG < 41bp 0.500528921766711 0.824901976913171 0.22738764 0.27394688 prediction 0.648746110292918 Functional Gain - FAM41C;LOC100130417 ENSG00000230699;ENSG00000241180 ncRNA_exonic Human other chr1:849571 chr1:849575 . . 0 25 hm5C_associated_SNPs_100442 0 0 0 0 0 unknown 0.500231642116363 0.500231308958078 0 0 hm5C_site_53587 DeepMRMD:0;iRNA_m5C:0 53588 chr14 29237217 29237217 1 + C A LIHC 29237213 + 29237193 29237233 41 CAAGTGCTTCGTGAAGGTGCCGCGCCACTACGACGACCCGG CAAGTGCTTCGTGAAGGTGCCGCGACACTACGACGACCCGG < 41bp 0.545015762918913 0.869365527936006 0.28982824 0.4281901 prediction 0.648699530034186 Functional Gain - FOXG1 ENSG00000176165 CDS Human protein_coding chr14:29237213 chr14:29237217 synonymous SNV . 0 25 hm5C_associated_SNPs_100443 0 0 1 0 0 Cytosol 0.500231662146661 0.500236322465867 0 9.3206384115252e-06 hm5C_site_53588 DeepMRMD:0;iRNA_m5C:9.3206384115252e-06 53589 chr18 61471743 61471743 1 + C A LUAD 61471739 + 61471719 61471759 41 GGAGGGCACCGAGGCTACTGCTGCCACAGGAAGTAATATTG GGAGGGCACCGAGGCTACTGCTGCAACAGGAAGTAATATTG < 41bp 0.432721745184469 0.824313978421436 0.22201017 0.23306546 prediction 0.648627956842871 Functional Gain - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61471739 chr18:61471743 synonymous SNV . 0 25 hm5C_associated_SNPs_100444 0 0 0 0 0 exosome 0.500231643921092 0.500231643921066 0 0 hm5C_site_53589 DeepMRMD:0;iRNA_m5C:0 53590 chr3 197894609 197894609 1 + T G COAD 197894606 + 197894586 197894626 41 GAAACTGTGAGCAAGAGCGTCTGTGCTGAACCATGGCGCCA GAAACTGTGAGCAAGAGCGTCTGGGCTGAACCATGGCGCCA < 41bp 0.469516967367107 0.824301052143408 0.3436152 0.8817878 prediction 0.648602104286816 Functional Gain - FAM157A;FAM157B ENSG00000236438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:197894606 chr3:197894609 . . 0 24 hm5C_associated_SNPs_100445 0 0 1 0 0 unknown 0.500225585793661 0.50022856669839 0.7635756 5.9618094589986e-06 hm5C_site_53590 DeepMRMD:0.7635756;iRNA_m5C:5.9618094589986e-06 53591 chr21 36157125 36157125 1 + C A rs146260509 36157121 + 36157101 36157141 41 AGGTTGCAGTGAGCCAAGATCGCACGGTTGCACTTCAGCCT AGGTTGCAGTGAGCCAAGATCGCAAGGTTGCACTTCAGCCT < 41bp 0.502492189059979 0.826784899541071 0.8951955 0.87656265 prediction 0.648585420962185 Functional Gain - LINC01426 ENSG00000234380 ncRNA_exonic Human antisense chr21:36157121 chr21:36157125 . . 0 25 hm5C_associated_SNPs_100446 0 0 0 0 0 unknown 0.500231651469704 0.50023171251765 0 1.22095892063356e-07 hm5C_site_53591 DeepMRMD:0;iRNA_m5C:1.22095892063356e-07 53592 chr22 21804312 21804312 1 + C A rs192469690 21804308 + 21804288 21804328 41 GGGGCCCCCTAACCCCACCCCAGGCAGCGGAAGGGGCTGAC GGGGCCCCCTAACCCCACCCCAGGAAGCGGAAGGGGCTGAC < 41bp 0.510891493756672 0.835160919448744 0.36247933 0.5724807 prediction 0.648538851384145 Functional Gain - HIC2 ENSG00000169635 UTR3 Human protein_coding chr22:21804308 chr22:21804312 . . 0 25 hm5C_associated_SNPs_100447 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.1449614 0 hm5C_site_53592 DeepMRMD:0.1449614;iRNA_m5C:0 53593 chr19 49206503 49206503 1 + C A COAD 49206499 + 49206479 49206519 41 ACGGGCGGCCCGCCTTCATCCCGGCCCAGATGCACAGCACC ACGGGCGGCCCGCCTTCATCCCGGACCAGATGCACAGCACC < 41bp 0.543917461980526 0.868179405165664 0.84262913 0.84001553 prediction 0.648523886370277 Functional Gain - FUT2 ENSG00000176920 CDS Human protein_coding chr19:49206499 chr19:49206503 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100448 0 0 0 0 0 Nucleus 0.50023093909093 0.500231665202789 0 1.4522237161696e-06 hm5C_site_53593 DeepMRMD:0;iRNA_m5C:1.4522237161696e-06 53594 chr10 43606838 43606838 1 + T G HNSC 43606835 + 43606815 43606855 41 GGCCCAAGTGTGCCGAACTTCACTACATGGTGGTGGCCACC GGCCCAAGTGTGCCGAACTTCACGACATGGTGGTGGCCACC < 41bp 0.547860681466813 0.872122389206936 0.31191128 0.10055503 prediction 0.648523415480245 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43606835 chr10:43606838 nonsynonymous SNV 0.040 2 24 hm5C_associated_SNPs_100449 0 0 0 0 1 Cytosol 0.500231643920966 0.500231479325445 0 0 hm5C_site_53594 DeepMRMD:0;iRNA_m5C:0 53595 chr11 551229 551229 1 + C A rs201646765 551225 + 551205 551245 41 GGCCGCACACACAGGCCCACCGGCCCCCCCGCGGCTGAGCC GGCCGCACACACAGGCCCACCGGCACCCCCGCGGCTGAGCC < 41bp 0.43730824544932 0.824253785424421 0.22065958 0.34503704 prediction 0.648507570848841 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551225 chr11:551229 synonymous SNV . 0 25 hm5C_associated_SNPs_100450 0 0 0 0 2 Nucleus 0.500231643847804 0.500231643957727 0 2.19846141291669e-10 hm5C_site_53595 DeepMRMD:0;iRNA_m5C:2.19846141291669e-10 53596 chr1 155023527 155023527 1 + G T rs537651146 155023531 - 155023511 155023551 41 CCGGCGCCAGGTCCGGACCCCTCCCTAGTAGCTTCGCGGCC CCGGCGCCAGGTCCGGACCCCTCCATAGTAGCTTCGCGGCC < 41bp 0.466414023878014 0.824235975651387 0.49584648 0.97555274 prediction 0.648471951302774 Functional Gain - DCST1-AS1 ENSG00000143537;ENSG00000163357 upstream;downstream Human other chr1:155023531 chr1:155023527 . . 0 25 hm5C_associated_SNPs_100451 0 0 0 0 0 unknown 0.500231643873459 0.500231643642292 0.95110548 0 hm5C_site_53596 DeepMRMD:0.95110548;iRNA_m5C:0 53597 chr9 90500608 90500608 1 + C A LUSC 90500604 + 90500584 90500624 41 GGGGAAGGAGTGGGACATCACGACCCTAAATCCCTTCTGGA GGGGAAGGAGTGGGACATCACGACACTAAATCCCTTCTGGA < 41bp 0.457664473293333 0.824222408116186 0.2017785 0.33473313 prediction 0.648444816232372 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90500604 chr9:90500608 synonymous SNV . 0 25 hm5C_associated_SNPs_100452 0 0 0 0 0 exosome 0.500231637822688 0.500231643920918 0 1.21964602861624e-08 hm5C_site_53597 DeepMRMD:0;iRNA_m5C:1.21964602861624e-08 53598 chr1 202273705 202273705 1 + C A LUSC 202273701 + 202273681 202273721 41 CTGCAGGACCCTGACCCGCGCAGGCATCCGGCTGCTCCCAT CTGCAGGACCCTGACCCGCGCAGGAATCCGGCTGCTCCCAT < 41bp 0.54873246869382 0.872913402569331 0.8588289 0.9040164 prediction 0.648361867751023 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273701 chr1:202273705 synonymous SNV . 0 25 hm5C_associated_SNPs_100453 0 0 0 0 2 nucleoplasm 0.500231643921092 0.500231643921093 0.0903750000000001 2.22044604925031e-16 hm5C_site_53598 DeepMRMD:0.0903750000000001;iRNA_m5C:2.22044604925031e-16 53599 chr16 66511560 66511560 1 + C A rs142343073 66511556 + 66511536 66511576 41 CCCACCCTTGGACATCAGCTCTGACGGGGACGTGGATGCCA CCCACCCTTGGACATCAGCTCTGAAGGGGACGTGGATGCCA < 41bp 0.431997726082319 0.824164309840497 0.050415277 0.074831724 prediction 0.648328619680995 Functional Gain - BEAN1 ENSG00000166546 CDS Human protein_coding chr16:66511556 chr16:66511560 nonsynonymous SNV 0.746 0 25 hm5C_associated_SNPs_100454 0 0 0 0 0 nucleus 0.500231644118203 0.500231643942329 0 0 hm5C_site_53599 DeepMRMD:0;iRNA_m5C:0 53600 chr1 12169678 12169678 1 + C A OV 12169674 + 12169654 12169694 41 GGCTTCCCCAGGGGTCAGCCCTGCCTGTGCCAGCCCAGAGA GGCTTCCCCAGGGGTCAGCCCTGCATGTGCCAGCCCAGAGA < 41bp 0.419842808595228 0.824157777851709 0.24298775 0.7863609 prediction 0.648315555703418 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12169674 chr1:12169678 synonymous SNV . 0 25 hm5C_associated_SNPs_100455 0 0 1 0 2 Endoplasmic reticulum 0.500231728993731 0.500231643921092 0.5727218 0 hm5C_site_53600 DeepMRMD:0.5727218;iRNA_m5C:0 53601 chr5 140502934 140502934 1 + C A KIRC 140502930 + 140502910 140502950 41 AATGACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCT AATGACAACGCCCCCGCCTTCACCAAAACCTCCTACACCCT < 41bp 0.443925164798262 0.824148277069649 0.05708468 0.13018295 prediction 0.648296554139299 Functional Gain - PCDHB4 ENSG00000081818 CDS Human protein_coding chr5:140502930 chr5:140502934 nonsynonymous SNV 0.049 1 25 hm5C_associated_SNPs_100456 0 0 0 0 0 exosome 0.500231643921094 0.500231643921092 0 0 hm5C_site_53601 DeepMRMD:0;iRNA_m5C:0 53602 chr1 12785847 12785847 1 + C A CESC 12785843 + 12785823 12785863 41 GACCTGGGAGTGCCCGTGACCTGGCACCATATGGAGGATGG GACCTGGGAGTGCCCGTGACCTGGAACCATATGGAGGATGG < 41bp 0.450821204133068 0.824142090526964 0.13240537 0.40697503 prediction 0.648284181053927 Functional Gain - AADACL3 ENSG00000188984 CDS Human protein_coding chr1:12785843 chr1:12785847 nonsynonymous SNV 0.012 2 25 hm5C_associated_SNPs_100457 0 0 0 0 0 unknown 0.50023198915694 0.500231644148472 0 0 hm5C_site_53602 DeepMRMD:0;iRNA_m5C:0 53603 chr5 175799590 175799590 1 + C A rs534680857 175799586 + 175799566 175799606 41 TCCCTGAGCCCAGGCCTGGCCTGCCAGCCTCTCTTGACTAC TCCCTGAGCCCAGGCCTGGCCTGCAAGCCTCTCTTGACTAC < 41bp 0.464961174376108 0.824120107950314 0.01865694 0.029856443 prediction 0.648240215900628 Functional Gain - ARL10 ENSG00000175414 UTR3 Human protein_coding chr5:175799586 chr5:175799590 . . 0 25 hm5C_associated_SNPs_100458 0 0 1 0 0 cytosol 0.500231643921093 0.500231643921078 0 0 hm5C_site_53603 DeepMRMD:0;iRNA_m5C:0 53604 chr19 8321589 8321589 1 + C A LUAD 8321585 + 8321565 8321605 41 ATCAGGCTGCCCTTTGATGTCAAGCGCAAGGTGAGGCCAAA ATCAGGCTGCCCTTTGATGTCAAGAGCAAGGTGAGGCCAAA < 41bp 0.551291656423719 0.87538838955169 0.38244012 0.30034068 prediction 0.648193466255942 Functional Gain - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8321585 chr19:8321589 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_100459 0 0 0 0 2 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_53604 DeepMRMD:0;iRNA_m5C:0 53605 chr1 76262742 76262742 1 + C A LUSC 76262738 + 76262718 76262758 41 TTCCCCGTCGTCGGGAGAAACCCGCTCACCTCAGGGTCCCC TTCCCCGTCGTCGGGAGAAACCCGATCACCTCAGGGTCCCC < 41bp 0.536640435049476 0.860736026518855 0.46748546 0.7814732 prediction 0.648191182938758 Functional Gain - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76262738 chr1:76262742 synonymous SNV . 0 25 hm5C_associated_SNPs_100460 0 0 1 0 0 exosome 0.500231643863839 0.500231800260249 0.5629464 3.12792820311714e-07 hm5C_site_53605 DeepMRMD:0.5629464;iRNA_m5C:3.12792820311714e-07 53606 chr11 69933978 69933978 1 + C A LUAD 69933974 + 69933954 69933994 41 CATCACAAGAGGCCCTCGGGCAACCGGACCCTGGTCAGGAG CATCACAAGAGGCCCTCGGGCAACAGGACCCTGGTCAGGAG < 41bp 0.435783080580974 0.824070707437165 0.11134523 0.11072266 prediction 0.64814141487433 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69933974 chr11:69933978 synonymous SNV . 0 25 hm5C_associated_SNPs_100461 0 0 0 0 0 Cytosol 0.500231574318952 0.500231643919042 0 1.39200178495003e-07 hm5C_site_53606 DeepMRMD:0;iRNA_m5C:1.39200178495003e-07 53607 chr22 45813689 45813689 1 + T G COAD 45813686 + 45813666 45813706 41 AGATAATGATGTTCGGAATACGATATCAGGAATGCAGAAAT AGATAATGATGTTCGGAATACGAGATCAGGAATGCAGAAAT < 41bp 0.464177096416139 0.824064110790103 0.026899248 0.29102713 prediction 0.648128221580206 Functional Gain - RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45813686 chr22:45813689 nonsynonymous SNV 0.987 0 24 hm5C_associated_SNPs_100462 0 0 0 0 0 exosome 0.500231642802039 0.500231673122114 0 6.06401497904585e-08 hm5C_site_53607 DeepMRMD:0;iRNA_m5C:6.06401497904585e-08 53608 chr12 113348875 113348875 1 + T G ACC 113348872 + 113348852 113348892 41 ACAGGTCAGTTGACTGGCGGCTATAAACCTAACCCCCAAAT ACAGGTCAGTTGACTGGCGGCTAGAAACCTAACCCCCAAAT < 41bp 0.479379942357296 0.824020336632867 0.1921733 0.25532734 prediction 0.648040673265735 Functional Gain - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113348872 chr12:113348875 stopgain 0.001 0 24 hm5C_associated_SNPs_100463 0 0 0 0 1 Ribosome 0.500231643921092 0.50023164392109 0 0 hm5C_site_53608 DeepMRMD:0;iRNA_m5C:0 53609 chr10 95259963 95259963 1 + C A GBM 95259959 + 95259939 95259979 41 TCACAAGTGGGAAAGGAAAGCTGACTGATAAAGAGAGACAC TCACAAGTGGGAAAGGAAAGCTGAATGATAAAGAGAGACAC < 41bp 0.438758040205917 0.824015937038901 0.2099728 0.16457304 prediction 0.648031874077801 Functional Gain - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95259959 chr10:95259963 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_100464 0 0 1 0 1 Ribosome 0.500231795225684 0.500230908101352 0 0 hm5C_site_53609 DeepMRMD:0;iRNA_m5C:0 53610 chr20 23350277 23350277 1 + C A COAD 23350273 + 23350253 23350293 41 AAGCAGTTCACCCAGCTCAACGCCCTCCAGCGCCACCGCCG AAGCAGTTCACCCAGCTCAACGCCATCCAGCGCCACCGCCG < 41bp 0.568411944437032 0.89242140975083 0.015412569 0.057884872 prediction 0.648018930627596 Functional Gain - GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350273 chr20:23350277 nonsynonymous SNV 0.984 4 25 hm5C_associated_SNPs_100465 0 0 0 0 1 Cytosol 0.500231643920385 0.500034844376047 0 0 hm5C_site_53610 DeepMRMD:0;iRNA_m5C:0 53611 chr5 64859128 64859128 1 + T G rs116792697 64859125 + 64859105 64859145 41 TTGTGTCGCGCCTTTTCTGACGATGCGAACAACATGGCGGC TTGTGTCGCGCCTTTTCTGACGAGGCGAACAACATGGCGGC < 41bp 0.489420949131107 0.823955426376776 0.2751608 0.9225292 prediction 0.647910852753551 Functional Gain - PPWD1 ENSG00000113593 UTR5 Human protein_coding chr5:64859125 chr5:64859128 . . 0 24 hm5C_associated_SNPs_100466 0 0 1 0 0 chromatin 0.500231643921094 0.500231643921092 0.8450584 0 hm5C_site_53611 DeepMRMD:0.8450584;iRNA_m5C:0 53612 chr9 90266467 90266467 1 + C A UCEC 90266463 + 90266443 90266483 41 ACGGACACATTGCCCTTCATCTGGCTGTAAGACGGTGTCAG ACGGACACATTGCCCTTCATCTGGATGTAAGACGGTGTCAG < 41bp 0.552710334077959 0.876661607202274 0.44384572 0.46473688 prediction 0.647902546248631 Functional Gain - DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90266463 chr9:90266467 nonsynonymous SNV 0.884 4 25 hm5C_associated_SNPs_100467 0 0 0 0 1 Ribosome 0.500234127315652 0.500231643922828 0 0 hm5C_site_53612 DeepMRMD:0;iRNA_m5C:0 53613 chr19 4224528 4224528 1 + T G rs201895992 4224525 + 4224505 4224545 41 AAGGCCAGGCCCAGTGGCTACACTGACCACACCCACGCAGG AAGGCCAGGCCCAGTGGCTACACGGACCACACCCACGCAGG < 41bp 0.466898891250842 0.823941089999654 0.1787172 0.93106437 prediction 0.647882179999309 Functional Gain - ANKRD24 ENSG00000089847 UTR3 Human protein_coding chr19:4224525 chr19:4224528 . . 0 24 hm5C_associated_SNPs_100468 0 0 0 0 0 exosome 0.500231643964765 0.500231643921093 0.86212874 0 hm5C_site_53613 DeepMRMD:0.86212874;iRNA_m5C:0 53614 chr22 17083002 17083002 1 + C A rs541954424 17082998 + 17082978 17083018 41 CGTGGAGCAGCCGCAGCCACCACCCCCCGAGGAGCCTGGAG CGTGGAGCAGCCGCAGCCACCACCACCCGAGGAGCCTGGAG < 41bp 0.525622482986503 0.849517738650687 0.30445924 0.36675608 prediction 0.647790511328368 Functional Gain - TPTEP1 ENSG00000100181 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17082998 chr22:17083002 . . 0 25 hm5C_associated_SNPs_100469 0 0 1 0 0 unknown 0.500231643921091 0.500231643920978 0 0 hm5C_site_53614 DeepMRMD:0;iRNA_m5C:0 53615 chr16 30941812 30941812 1 + C A COAD 30941808 + 30941788 30941828 41 CCTTGGCTGCTGGATCCGACCACCCCCTGCCCCGGGCCGCC CCTTGGCTGCTGGATCCGACCACCACCTGCCCCGGGCCGCC < 41bp 0.43283687664855 0.823892046366287 0.09910762 0.087173045 prediction 0.647784092732573 Functional Gain - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30941808 chr16:30941812 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_100470 0 0 1 0 1 chromatin 0.500231637869486 0.500231667905035 0 6.00710980958041e-08 hm5C_site_53615 DeepMRMD:0;iRNA_m5C:6.00710980958041e-08 53616 chr11 93800893 93800893 1 + G T PRAD 93800897 - 93800877 93800917 41 CCTTGTAGGTGGTCGCTGACCTGGCAGGTTATCATCCACTT CCTTGTAGGTGGTCGCTGACCTGGAAGGTTATCATCCACTT < 41bp 0.545156868824266 0.869006772434632 0.30722743 0.17808858 prediction 0.647699807220731 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93800897 chr11:93800893 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_100471 0 0 0 0 1 exosome 0.500230981669956 0.500231643898555 0 1.32445719747132e-06 hm5C_site_53616 DeepMRMD:0;iRNA_m5C:1.32445719747132e-06 53617 chr13 58207584 58207584 1 + C A BLCA 58207580 + 58207560 58207600 41 TTCTCCATCGACCCCAAGACCGGCCTAATCCGTGTGAAGGG TTCTCCATCGACCCCAAGACCGGCATAATCCGTGTGAAGGG < 41bp 0.434636712765709 0.82382719669851 0.4314363 0.5994835 prediction 0.647654393397019 Functional Gain - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58207580 chr13:58207584 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_100472 0 0 0 0 0 exosome 0.500231643921092 0.500231632153869 0.198967 0 hm5C_site_53617 DeepMRMD:0.198967;iRNA_m5C:0 53618 chr17 60518026 60518026 1 + C A UCEC 60518022 + 60518002 60518042 41 CGGTGTTTTGCCTTTGTTCACGACCTGTGTGATGAAGAGAA CGGTGTTTTGCCTTTGTTCACGACATGTGTGATGAAGAGAA < 41bp 0.438359250683954 0.823788162163089 0.21299565 0.45213744 prediction 0.647576324326177 Functional Gain - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60518022 chr17:60518026 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_100473 0 0 0 0 2 Ribosome 0.500231643921551 0.500231641048876 0 0 hm5C_site_53618 DeepMRMD:0;iRNA_m5C:0 53619 chr1 201618242 201618242 1 + C A ESCA 201618238 + 201618218 201618258 41 AGTCGGAGCACTCGCTCTTCCAGGCCAAGGGCAGCCCGGCG AGTCGGAGCACTCGCTCTTCCAGGACAAGGGCAGCCCGGCG < 41bp 0.512476556163958 0.836256471312215 0.85883665 0.8753505 prediction 0.647559830296514 Functional Gain - NAV1 ENSG00000134369 CDS Human protein_coding chr1:201618238 chr1:201618242 nonsynonymous SNV 0.830 1 25 hm5C_associated_SNPs_100474 0 0 0 0 0 Nucleus 0.500231643921014 0.500231643819554 0.0330277000000001 0 hm5C_site_53619 DeepMRMD:0.0330277000000001;iRNA_m5C:0 53620 chr4 187074877 187074877 1 + C A LUSC 187074873 + 187074853 187074893 41 GGGCAGCACTCCTGCCTCCGCAGTCCACAGACCCCCGCTCA GGGCAGCACTCCTGCCTCCGCAGTACACAGACCCCCGCTCA < 41bp 0.446158915784843 0.823772303355372 0.21342656 0.1790612 prediction 0.647544606710744 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187074873 chr4:187074877 synonymous SNV . 0 25 hm5C_associated_SNPs_100475 0 0 0 0 0 Cytosol 0.500231932237956 0.500231643921092 0 0 hm5C_site_53620 DeepMRMD:0;iRNA_m5C:0 53621 chr5 54603898 54603898 1 + T G rs16884049 54603895 + 54603875 54603915 41 GTGTTCGAGGGCGACTCGACCACTGCGGCGGGAACCAAAAA GTGTTCGAGGGCGACTCGACCACGGCGGCGGGAACCAAAAA < 41bp 0.525824764679084 0.849595937717603 0.052661538 0.44027814 prediction 0.647542346077037 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54603895 chr5:54603898 synonymous SNV . 0 24 hm5C_associated_SNPs_100476 0 0 1 0 0 Nucleus 0.500231643922284 0.500231853506601 0 4.19168634024913e-07 hm5C_site_53621 DeepMRMD:0;iRNA_m5C:4.19168634024913e-07 53622 chr6 130762684 130762684 1 + T G STAD 130762681 + 130762661 130762701 41 TCGGACCTGGGGCTGGACAGCTCTTGTCTCCTGGGGCTGCC TCGGACCTGGGGCTGGACAGCTCGTGTCTCCTGGGGCTGCC < 41bp 0.532177413067871 0.855948034458693 0.15366179 0.39193815 prediction 0.647541242781644 Functional Gain - TMEM200A ENSG00000164484 CDS Human protein_coding chr6:130762681 chr6:130762684 nonsynonymous SNV 0.993 3 24 hm5C_associated_SNPs_100477 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_53622 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 53623 chr4 48027167 48027167 1 + T G rs35150964 48027165 + 48027145 48027185 41 TGTCACAGCTGCTGGCTTCTCCTGTGCTCTACACGGACCTG TGTCACAGCTGCTGGCTTCTCCGGTGCTCTACACGGACCTG < 41bp 0.505639016002248 0.829327183556668 0.22798455 0.89603657 prediction 0.64737633510884 Functional Gain - NIPAL1 ENSG00000163293 CDS Human protein_coding chr4:48027165 chr4:48027167 synonymous SNV . 0 23 hm5C_associated_SNPs_100478 0 0 1 0 1 Ribosome 0.500231644282348 0.500231695207057 0.79207314 1.01849417788458e-07 hm5C_site_53623 DeepMRMD:0.79207314;iRNA_m5C:1.01849417788458e-07 53624 chr3 177257279 177257279 1 + C A rs115721732 177257275 + 177257255 177257295 41 AATGTAAATGCTCCCAGGCCCGGGCAGGTAATTTAAGTGAG AATGTAAATGCTCCCAGGCCCGGGAAGGTAATTTAAGTGAG < 41bp 0.498732021178218 0.823664814809864 0.40951973 0.49210683 prediction 0.647329629619728 Functional Gain - LINC00578 ENSG00000228221 ncRNA_exonic Human lincRNA chr3:177257275 chr3:177257279 . . 0 25 hm5C_associated_SNPs_100479 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_53624 DeepMRMD:0;iRNA_m5C:0 53625 chr14 50088031 50088031 1 + C A PAAD 50088027 + 50088007 50088047 41 ACGGAAGGTGCTAATCCTGACGCTCGTGGTGGCCGCCTGCG ACGGAAGGTGCTAATCCTGACGCTAGTGGTGGCCGCCTGCG < 41bp 0.463197850980001 0.823664733341782 0.04242012 0.18278113 prediction 0.647329466683563 Functional Gain - MGAT2 ENSG00000168282 CDS Human protein_coding chr14:50088027 chr14:50088031 synonymous SNV . 0 25 hm5C_associated_SNPs_100480 0 0 1 0 0 Endoplasmic reticulum 0.5002316439134 0.500231687900179 0 8.79735571057694e-08 hm5C_site_53625 DeepMRMD:0;iRNA_m5C:8.79735571057694e-08 53626 chr12 662877 662877 1 + C A COAD 662873 + 662853 662893 41 TGGGGAGGAGGAAGTGGTGGCGGCCGCAGGCCAGGAAGGAC TGGGGAGGAGGAAGTGGTGGCGGCAGCAGGCCAGGAAGGAC < 41bp 0.553569250936622 0.877167625328844 0.76606643 0.8691186 prediction 0.647196748784444 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:662873 chr12:662877 synonymous SNV . 0 25 hm5C_associated_SNPs_100481 0 0 0 0 0 exosome 0.500231643921092 0.500231643921083 0.20610434 0 hm5C_site_53626 DeepMRMD:0.20610434;iRNA_m5C:0 53627 chr10 101089772 101089772 1 + C A rs112168939 101089768 + 101089748 101089788 41 GGCTTCCTGCTGCGCGTTCGCCCGCGGTTGTACGGCCCAGG GGCTTCCTGCTGCGCGTTCGCCCGAGGTTGTACGGCCCAGG < 41bp 0.534373270363334 0.857966469808983 0.45469004 0.5814869 prediction 0.647186398891298 Functional Gain - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101089768 chr10:101089772 synonymous SNV . 0 25 hm5C_associated_SNPs_100482 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0.1629738 0 hm5C_site_53627 DeepMRMD:0.1629738;iRNA_m5C:0 53628 chr7 100211131 100211131 1 + C A UCEC 100211127 + 100211107 100211147 41 CGCCATGTGGCACCCATTCCCAGCCACTATGATGTCCAGGA CGCCATGTGGCACCCATTCCCAGCAACTATGATGTCCAGGA < 41bp 0.432477217030469 0.823578570513475 0.35142493 0.58930355 prediction 0.647157141026951 Functional Gain - MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100211127 chr7:100211131 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_100483 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643920029 0.1786071 0 hm5C_site_53628 DeepMRMD:0.1786071;iRNA_m5C:0 53629 chr16 84485577 84485577 1 + C A STAD 84485573 + 84485553 84485593 41 CTGGGGCGGCTGACGTTTCTCGGTCTTGTGGGCATCATTGA CTGGGGCGGCTGACGTTTCTCGGTATTGTGGGCATCATTGA < 41bp 0.558328091714227 0.881906369184219 0.6948205 0.4419762 prediction 0.647156554939984 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84485573 chr16:84485577 nonsynonymous SNV 0.362 1 25 hm5C_associated_SNPs_100484 0 0 0 0 1 Ribosome 0.500231643921075 0.500231643921093 0 3.44169137633799e-14 hm5C_site_53629 DeepMRMD:0;iRNA_m5C:3.44169137633799e-14 53630 chr5 161576143 161576143 1 + C A STAD 161576139 + 161576119 161576159 41 ACCACTGTCCTGACAATGACCACCCTCAGCACCATTGCCCG ACCACTGTCCTGACAATGACCACCATCAGCACCATTGCCCG < 41bp 0.422948579083555 0.823566914973245 0.044300795 0.08809498 prediction 0.64713382994649 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161576139 chr5:161576143 nonsynonymous SNV 0.983 4 25 hm5C_associated_SNPs_100485 0 0 0 0 1 exosome 0.500230741541782 0.500230489709013 0 0 hm5C_site_53630 DeepMRMD:0;iRNA_m5C:0 53631 chr1 17690206 17690206 1 + C A rs147723249 17690202 + 17690182 17690222 41 GAGGTGCACTGCGGCACCAACGTGCGCAGAAAGCCCTTCTC GAGGTGCACTGCGGCACCAACGTGAGCAGAAAGCCCTTCTC < 41bp 0.539510387167312 0.863069690222726 0.47462565 0.8420229 prediction 0.647118606110828 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17690202 chr1:17690206 nonsynonymous SNV 0.973 2 25 hm5C_associated_SNPs_100486 0 0 0 0 0 exosome 0.500231643921088 0.500231643921092 0.6840458 8.88178419700125e-15 hm5C_site_53631 DeepMRMD:0.6840458;iRNA_m5C:8.88178419700125e-15 53632 chr19 39687790 39687790 1 + C A rs537537610 39687786 + 39687766 39687806 41 ATCGCCCGCAGCCCCGGAGGCCCCCGAGCTCCCCGAGCCGG ATCGCCCGCAGCCCCGGAGGCCCCAGAGCTCCCCGAGCCGG < 41bp 0.480231017830301 0.8234739670894 0.33497065 0.49775785 prediction 0.646947934178801 Functional Gain - NCCRP1 ENSG00000188505 CDS Human protein_coding chr19:39687786 chr19:39687790 synonymous SNV . 0 25 hm5C_associated_SNPs_100487 0 0 0 0 0 exosome 0.500231644191318 0.500231643926232 0 0 hm5C_site_53632 DeepMRMD:0;iRNA_m5C:0 53633 chr2 207509164 207509164 1 + T G UCEC 207509161 + 207509141 207509181 41 TGGAAACCTCGCGTTTCCAACACTGTTTCAGGCTTCTGGGA TGGAAACCTCGCGTTTCCAACACGGTTTCAGGCTTCTGGGA < 41bp 0.508805255294011 0.832269423428042 0.014189601 0.08738029 prediction 0.646928336268062 Functional Gain - FAM237A ENSG00000235118 ncRNA_exonic Human protein_coding chr2:207509161 chr2:207509164 . . 0 24 hm5C_associated_SNPs_100488 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0 0 hm5C_site_53633 DeepMRMD:0;iRNA_m5C:0 53634 chr12 58015116 58015116 1 + C A COAD 58015112 + 58015092 58015132 41 CCGAGCCTGTGGTCAAGGCGCTGACCAGCGGGGCCGCGCTG CCGAGCCTGTGGTCAAGGCGCTGAACAGCGGGGCCGCGCTG < 41bp 0.564245790739425 0.887702781469153 0.25631723 0.8686063 prediction 0.646913981459457 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58015112 chr12:58015116 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100489 0 0 0 0 2 chromatin 0.50023164392109 0.500231643921092 0.7372126 4.66293670342566e-15 hm5C_site_53634 DeepMRMD:0.7372126;iRNA_m5C:4.66293670342566e-15 53635 chr4 69964391 69964391 1 + C A rs34661811 69964387 + 69964367 69964407 41 TGGAGGACTCCACTGCAAACCTGCCAAACCCCTGCCTAAGG TGGAGGACTCCACTGCAAACCTGCAAAACCCCTGCCTAAGG < 41bp 0.427337448201313 0.823452617673835 0.15338546 0.26607656 prediction 0.64690523534767 Functional Gain - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69964387 chr4:69964391 synonymous SNV . 0 25 hm5C_associated_SNPs_100490 0 0 0 0 1 Endoplasmic reticulum 0.500231643921093 0.50023164434147 0 8.40755465247867e-10 hm5C_site_53635 DeepMRMD:0;iRNA_m5C:8.40755465247867e-10 53636 chr5 140802689 140802689 1 + C A COAD 140802685 + 140802665 140802705 41 CGGGCGAGGTGCGTACAGCGCGGGCACTGCTGGACAGAGAC CGGGCGAGGTGCGTACAGCGCGGGAACTGCTGGACAGAGAC < 41bp 0.53276739136611 0.856203509026782 0.8480921 0.8118392 prediction 0.646872235321343 Functional Gain - PCDHGA11 ENSG00000253873 CDS Human protein_coding chr5:140802685 chr5:140802689 nonsynonymous SNV 0.671 2 25 hm5C_associated_SNPs_100491 0 0 0 0 0 exosome 0.500231902082542 0.500231644188313 0 0 hm5C_site_53636 DeepMRMD:0;iRNA_m5C:0 53637 chr20 44352622 44352622 1 + C A rs114654740 44352618 + 44352598 44352638 41 ATGTGAAACTTTTGTCTTCTCCGGCTGTAATGGCAACCTTA ATGTGAAACTTTTGTCTTCTCCGGATGTAATGGCAACCTTA < 41bp 0.466348913093325 0.823387204726008 0.85678256 0.94025993 prediction 0.646774409452016 Functional Gain - SPINT4 ENSG00000149651 CDS Human protein_coding chr20:44352618 chr20:44352622 synonymous SNV . 0 25 hm5C_associated_SNPs_100492 0 0 0 0 1 exosome 0.500231187770952 0.500231643657737 0.16695474 9.11773569756136e-07 hm5C_site_53637 DeepMRMD:0.16695474;iRNA_m5C:9.11773569756136e-07 53638 chr10 8100426 8100426 1 + C A LUSC 8100422 + 8100402 8100442 41 TCCCCGGGGCCCCTCTCCGTCTACCCCCCGGCCTCGTCCTC TCCCCGGGGCCCCTCTCCGTCTACACCCCGGCCTCGTCCTC < 41bp 0.425710460150821 0.823382618566103 0.05245778 0.07952279 prediction 0.646765237132206 Functional Gain - GATA3 ENSG00000107485 CDS Human protein_coding chr10:8100422 chr10:8100426 nonsynonymous SNV 0.311 1 25 hm5C_associated_SNPs_100493 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643923693 0 5.20161691497378e-12 hm5C_site_53638 DeepMRMD:0;iRNA_m5C:5.20161691497378e-12 53639 chr14 23306080 23306080 1 + C A ESCA 23306076 + 23306056 23306096 41 TCTCCTGCTCCCCCTGCTCACGCTCGGCACCGCGCTCGCCT TCTCCTGCTCCCCCTGCTCACGCTAGGCACCGCGCTCGCCT < 41bp 0.455599154994825 0.823364800377375 0.04550931 0.2684563 prediction 0.646729600754751 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23306076 chr14:23306080 synonymous SNV . 0 25 hm5C_associated_SNPs_100494 0 0 0 0 1 cytosol 0.500231643922019 0.500231643921416 0 0 hm5C_site_53639 DeepMRMD:0;iRNA_m5C:0 53640 chr11 65631078 65631078 1 + C A COAD 65631074 + 65631054 65631094 41 CCTCCTTGCCACTCCAGGGGCGGGCACAGGCCGGAGCTGCT CCTCCTTGCCACTCCAGGGGCGGGAACAGGCCGGAGCTGCT < 41bp 0.451921944794797 0.823361185919524 0.9096576 0.9124927 prediction 0.646722371839048 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631074 chr11:65631078 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_100495 0 0 1 0 1 Ribosome 0.500231643920798 0.500231644352293 0.00567020000000018 8.6299012380664e-10 hm5C_site_53640 DeepMRMD:0.00567020000000018;iRNA_m5C:8.6299012380664e-10 53641 chr2 132021422 132021422 1 + C A rs200048058 132021418 + 132021398 132021438 41 CTACAACGAGCTGCGTGTGGCTCCCGAGGAGCACCCCATCC CTACAACGAGCTGCGTGTGGCTCCAGAGGAGCACCCCATCC < 41bp 0.435082357886915 0.82334439453743 0.23403814 0.9335891 prediction 0.646688789074861 Functional Gain - POTEE ENSG00000188219 CDS Human protein_coding chr2:132021418 chr2:132021422 synonymous SNV . 0 25 hm5C_associated_SNPs_100496 0 0 1 0 0 chromatin 0.5002316439212 0.500231643921462 0.8671782 5.24025267623074e-13 hm5C_site_53641 DeepMRMD:0.8671782;iRNA_m5C:5.24025267623074e-13 53642 chr1 247681687 247681687 1 + C A rs6700954 247681683 + 247681663 247681703 41 CCTCTCGCGCGACTTGGCCTCGGCCCCTCGGGGGCAGTGCA CCTCTCGCGCGACTTGGCCTCGGCACCTCGGGGGCAGTGCA < 41bp 0.493141397414515 0.823319656720191 0.9030032 0.92056215 prediction 0.646639313440381 Functional Gain - GCSAML ENSG00000169224 intronic Human protein_coding chr1:247681683 chr1:247681687 . . 0 25 hm5C_associated_SNPs_100497 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0351178999999999 0 hm5C_site_53642 DeepMRMD:0.0351178999999999;iRNA_m5C:0 53643 chr3 130284269 130284269 1 + C A LUAD 130284265 + 130284245 130284285 41 CGGGAGGGTGTGACCATCTTCACCCTGGGCATAGAGGGCGC CGGGAGGGTGTGACCATCTTCACCATGGGCATAGAGGGCGC < 41bp 0.429110425731136 0.823260438008423 0.34110117 0.5607978 prediction 0.646520876016845 Functional Gain - COL6A6 ENSG00000206384 CDS Human protein_coding chr3:130284265 chr3:130284269 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_100498 0 0 0 0 0 exosome 0.500231643884613 0.50023164391678 0.1215956 6.43354258755835e-11 hm5C_site_53643 DeepMRMD:0.1215956;iRNA_m5C:6.43354258755835e-11 53644 chr10 104661245 104661245 1 + C A rs17884001 104661241 + 104661221 104661261 41 ATTACAAGCATGAGCCACTGCGCCCGGCCATAAATGAATTA ATTACAAGCATGAGCCACTGCGCCAGGCCATAAATGAATTA < 41bp 0.528681554763345 0.851935931644867 0.1714198 0.47874707 prediction 0.646508753763043 Functional Gain - BORCS7-ASMT ENSG00000214435;ENSG00000270316 UTR3 Human other chr10:104661241 chr10:104661245 . . 0 25 hm5C_associated_SNPs_100499 0 0 0 0 0 exosome 0.500231643999424 0.500231643821759 0 0 hm5C_site_53644 DeepMRMD:0;iRNA_m5C:0 53645 chr11 66293630 66293630 1 + C A rs143495423 66293626 + 66293606 66293646 41 AGCCTTTGCTTTGGCCGGTACGGGCGGGAGGACAACACCCT AGCCTTTGCTTTGGCCGGTACGGGAGGGAGGACAACACCCT < 41bp 0.559321984587439 0.882563514486173 0.47822788 0.76836264 prediction 0.64648305979747 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66293626 chr11:66293630 synonymous SNV . 0 25 hm5C_associated_SNPs_100500 0 0 1 0 2 membrane 0.500231643921092 0.500231643921092 0.53672528 0 hm5C_site_53645 DeepMRMD:0.53672528;iRNA_m5C:0 53646 chr11 117869595 117869595 1 + C A LUAD 117869591 + 117869571 117869611 41 GACAGTGGCTTTGGCAGCACCAAGCCATCCCTGCAGACTGA GACAGTGGCTTTGGCAGCACCAAGACATCCCTGCAGACTGA < 41bp 0.458954608237338 0.823229936831928 0.11586025 0.26199073 prediction 0.646459873663856 Functional Gain - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117869591 chr11:117869595 nonsynonymous SNV 0.879 2 25 hm5C_associated_SNPs_100501 0 0 0 0 0 nucleoplasm 0.500231643931648 0.50023164393297 0 2.64299693242265e-12 hm5C_site_53646 DeepMRMD:0;iRNA_m5C:2.64299693242265e-12 53647 chr16 23387158 23387158 1 + C A COAD 23387154 + 23387134 23387174 41 CGTGGGGAGAAATACTGCAACAACCGGGACTTCCCAGACTG CGTGGGGAGAAATACTGCAACAACAGGGACTTCCCAGACTG < 41bp 0.429350856185508 0.823212320718295 0.081417054 0.18573692 prediction 0.646424641436589 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23387154 chr16:23387158 synonymous SNV . 0 25 hm5C_associated_SNPs_100502 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53647 DeepMRMD:0;iRNA_m5C:0 53648 chr7 150710412 150710412 1 + G T SARC 150710416 - 150710396 150710436 41 GTGAGGACTCGGCCAAACACCCCGCGCTGCTGGGCGTTCTG GTGAGGACTCGGCCAAACACCCCGAGCTGCTGGGCGTTCTG < 41bp 0.457093435001405 0.823192525663793 0.15173721 0.19423223 prediction 0.646385051327586 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150710416 chr7:150710412 nonsynonymous SNV 0.965 1 25 hm5C_associated_SNPs_100503 0 0 0 0 1 chromatin 0.500231194270178 0.500231799208397 0 1.20987643903447e-06 hm5C_site_53648 DeepMRMD:0;iRNA_m5C:1.20987643903447e-06 53649 chr11 69466021 69466021 1 + C A CESC 69466017 + 69465997 69466037 41 GAGGAGGTGGACCTGGCTTGCACACCCACCGACGTGCGGGA GAGGAGGTGGACCTGGCTTGCACAACCACCGACGTGCGGGA < 41bp 0.546486596501132 0.869672142452887 0.2811927 0.24029225 prediction 0.646371091903509 Functional Gain - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69466017 chr11:69466021 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_100504 0 0 1 0 0 Ribosome 0.500231647230881 0.500231643921984 0 0 hm5C_site_53649 DeepMRMD:0;iRNA_m5C:0 53650 chr10 124909146 124909146 1 + C A UCEC 124909142 + 124909122 124909162 41 GCTTGGAGCGCACGCCTTTCCTCTCTCCTTCGCACTCGGAC GCTTGGAGCGCACGCCTTTCCTCTATCCTTCGCACTCGGAC < 41bp 0.436040345375606 0.823175198324076 0.55855423 0.92830384 prediction 0.646350396648152 Functional Gain - HMX2 ENSG00000188816 CDS Human protein_coding chr10:124909142 chr10:124909146 nonsynonymous SNV 0.955 3 25 hm5C_associated_SNPs_100505 0 0 0 0 1 exosome 0.500231643954503 0.500231643921119 0.73949922 0 hm5C_site_53650 DeepMRMD:0.73949922;iRNA_m5C:0 53651 chr19 30934718 30934718 1 + C A LUAD 30934714 + 30934694 30934734 41 GCCCATGGGCAGTCAGATGGCGCTCCTGGCCAACCAGCTGG GCCCATGGGCAGTCAGATGGCGCTACTGGCCAACCAGCTGG < 41bp 0.553051850525387 0.876218449027292 0.29563507 0.32846817 prediction 0.646333197003809 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934714 chr19:30934718 synonymous SNV . 0 25 hm5C_associated_SNPs_100506 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53651 DeepMRMD:0;iRNA_m5C:0 53652 chr20 2605013 2605013 1 + C A OV 2605009 + 2604989 2605029 41 CTTTGCTTTCCTCGCCAATCCAGGCCTGATCATCCCAGCCA CTTTGCTTTCCTCGCCAATCCAGGACTGATCATCCCAGCCA < 41bp 0.563599641843634 0.886764290146326 0.7769963 0.7704077 prediction 0.646329296605384 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2605009 chr20:2605013 synonymous SNV . 0 25 hm5C_associated_SNPs_100507 0 0 0 0 2 exosome 0.500231643921094 0.500231643921093 0 0 hm5C_site_53652 DeepMRMD:0;iRNA_m5C:0 53653 chr11 123900875 123900875 1 + C A LUSC 123900871 + 123900851 123900891 41 GCACTATTTGTGTGATGCACCGCCCATCCTGAAACTGGCCT GCACTATTTGTGTGATGCACCGCCAATCCTGAAACTGGCCT < 41bp 0.450871691189579 0.823150735107872 0.039506614 0.3943722 prediction 0.646301470215743 Functional Gain - OR10G8 ENSG00000234560 CDS Human protein_coding chr11:123900871 chr11:123900875 synonymous SNV . 0 25 hm5C_associated_SNPs_100508 0 0 0 0 0 unknown 0.500233595827366 0.500238068487806 0 8.94532087980515e-06 hm5C_site_53653 DeepMRMD:0;iRNA_m5C:8.94532087980515e-06 53654 chr5 85578556 85578556 1 + C A LUAD 85578552 + 85578532 85578572 41 GGGTTTCTTCTCCCCAGTCCCTGGCTCTACCTCTTCTGCCA GGGTTTCTTCTCCCCAGTCCCTGGATCTACCTCTTCTGCCA < 41bp 0.493480382389342 0.823109746710908 0.2989151 0.88550735 prediction 0.646219493421817 Functional Gain - NBPF22P ENSG00000205449 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:85578552 chr5:85578556 . . 0 25 hm5C_associated_SNPs_100509 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.7710147 0 hm5C_site_53654 DeepMRMD:0.7710147;iRNA_m5C:0 53655 chr13 32527006 32527006 1 + C A PAAD 32527002 + 32526982 32527022 41 ACCAGAGAGACCTGGCTGAACGTGCTGGAGAAGAGCTTGCC ACCAGAGAGACCTGGCTGAACGTGATGGAGAAGAGCTTGCC < 41bp 0.463441609149862 0.823108882724277 0.26929286 0.36322463 prediction 0.646217765448553 Functional Gain - EEF1DP3 ENSG00000229715 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr13:32527002 chr13:32527006 . . 0 25 hm5C_associated_SNPs_100510 0 0 0 0 0 unknown 0.500231640325322 0.50023164397889 0 7.30713622942858e-09 hm5C_site_53655 DeepMRMD:0;iRNA_m5C:7.30713622942858e-09 53656 chr20 53260108 53260108 1 + C A LUAD 53260104 + 53260084 53260124 41 CAGCACAGCACGGGACAGCTCTACCGCTTGCAAGGTAAGCG CAGCACAGCACGGGACAGCTCTACAGCTTGCAAGGTAAGCG < 41bp 0.431509746229966 0.823100041762153 0.090285 0.18123507 prediction 0.646200083524305 Functional Gain - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53260104 chr20:53260108 nonsynonymous SNV 0.965 1 25 hm5C_associated_SNPs_100511 0 0 0 0 1 exosome 0.500231643921092 0.50023164434638 0 8.50575165856071e-10 hm5C_site_53656 DeepMRMD:0;iRNA_m5C:8.50575165856071e-10 53657 chr17 39383028 39383028 1 + C A BLCA 39383024 + 39383004 39383044 41 GCAGCACACCCTGCTGCCAGCCCGCCTGCTGTGTGTCCAGC GCAGCACACCCTGCTGCCAGCCCGACTGCTGTGTGTCCAGC < 41bp 0.46612313647903 0.823071047903188 0.032337993 0.021318972 prediction 0.646142095806377 Functional Gain - KRTAP9-2 ENSG00000239886 CDS Human protein_coding chr17:39383024 chr17:39383028 nonsynonymous SNV 0.098 0 25 hm5C_associated_SNPs_100512 0 0 0 0 0 unknown 0.500231645525028 0.500231643658341 0 0 hm5C_site_53657 DeepMRMD:0;iRNA_m5C:0 53658 chr2 102626148 102626148 1 + C A rs2230400 102626144 + 102626124 102626164 41 GTTGTGGGCCTCTGTCAGCCCCCGCATCAACCTGACATGGC GTTGTGGGCCTCTGTCAGCCCCCGAATCAACCTGACATGGC < 41bp 0.431198210698634 0.823066429311301 0.035709918 0.03149873 prediction 0.646132858622603 Functional Gain - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102626144 chr2:102626148 synonymous SNV . 0 25 hm5C_associated_SNPs_100513 0 0 0 0 0 Endoplasmic reticulum 0.500231644202357 0.500231627373085 0 0 hm5C_site_53658 DeepMRMD:0;iRNA_m5C:0 53659 chr12 108604049 108604049 1 + C A LUAD 108604045 + 108604025 108604065 41 GGCGCCAACCGCCTCTCTGTCTACCGGCTGCAGCTGGCCCA GGCGCCAACCGCCTCTCTGTCTACAGGCTGCAGCTGGCCCA < 41bp 0.567883190397441 0.890899380203368 0.26732388 0.5876774 prediction 0.646032379611853 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108604045 chr12:108604049 synonymous SNV . 0 25 hm5C_associated_SNPs_100514 0 0 0 0 1 Endoplasmic reticulum 0.500231640903945 0.500231643931009 0.1753548 6.05412742160638e-09 hm5C_site_53659 DeepMRMD:0.1753548;iRNA_m5C:6.05412742160638e-09 53660 chr17 27067871 27067871 1 + C A COAD 27067867 + 27067847 27067887 41 AAGCTGGGCCTGGACCACCTCTCCCTGGGGGAGGAGCCTGT AAGCTGGGCCTGGACCACCTCTCCATGGGGGAGGAGCCTGT < 41bp 0.406325674109893 0.822949747073127 0.9073553 0.972721 prediction 0.645899494146255 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27067867 chr17:27067871 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_100515 0 0 1 0 1 Nucleus 0.500231643932655 0.500231643920906 0.1307314 0 hm5C_site_53660 DeepMRMD:0.1307314;iRNA_m5C:0 53661 chr7 99818819 99818819 1 + T G STAD 99818816 + 99818796 99818836 41 TCACACTGGTCCCGGCCTCACTCTTTTCCCTGACCCTCGGG TCACACTGGTCCCGGCCTCACTCGTTTCCCTGACCCTCGGG < 41bp 0.463173981664047 0.822946636358601 0.082188964 0.11073238 prediction 0.645893272717201 Functional Gain - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99818816 chr7:99818819 nonsynonymous SNV 0.001 0 24 hm5C_associated_SNPs_100516 0 0 0 0 0 exosome 0.500231643921092 0.500231643921771 0 1.35713662530179e-12 hm5C_site_53661 DeepMRMD:0;iRNA_m5C:1.35713662530179e-12 53662 chr12 56530574 56530574 1 + C A LGG 56530570 + 56530550 56530590 41 TGACTTTAGGAGCACTGACGCTGCCTCTGGCCCGCCTGCTG TGACTTTAGGAGCACTGACGCTGCATCTGGCCCGCCTGCTG < 41bp 0.427965904764526 0.822911267413686 0.29861996 0.36008853 prediction 0.645822534827372 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56530570 chr12:56530574 nonsynonymous SNV 0.930 3 25 hm5C_associated_SNPs_100517 0 0 1 0 1 Endoplasmic reticulum 0.500231643921152 0.500231643926498 0 1.06927799947698e-11 hm5C_site_53662 DeepMRMD:0;iRNA_m5C:1.06927799947698e-11 53663 chr5 50683541 50683541 1 + C A rs200172777 50683537 + 50683517 50683557 41 AGGGCCAGTCTAGGCGCTGGCGACCCGCTCAGTCCCCTGCA AGGGCCAGTCTAGGCGCTGGCGACACGCTCAGTCCCCTGCA < 41bp 0.559448173927377 0.882341348166237 0.25370577 0.47751278 prediction 0.64578634847772 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683537 chr5:50683541 nonsynonymous SNV 0.984 2 25 hm5C_associated_SNPs_100518 0 0 0 0 1 exosome 0.500231643921092 0.500231643921097 0 8.43769498715119e-15 hm5C_site_53663 DeepMRMD:0;iRNA_m5C:8.43769498715119e-15 53664 chr19 54618999 54618999 1 + C A rs45619231 54618995 + 54618975 54619015 41 GGACGTGAGTCCCTTTCCTCCTCGCGGCTTACCGCCTCTCT GGACGTGAGTCCCTTTCCTCCTCGAGGCTTACCGCCTCTCT < 41bp 0.4851566818495 0.822888567371762 0.4987687 0.9021948 prediction 0.645777134743523 Functional Gain - PRPF31;TFPT ENSG00000105618;ENSG00000105619 UTR5 Human other chr19:54618995 chr19:54618999 . . 0 25 hm5C_associated_SNPs_100519 1 0 0 0 0 unknown 0.500231643921204 0.500231644180198 0.8043896 5.17988096859767e-10 hm5C_site_53664 DeepMRMD:0.8043896;iRNA_m5C:5.17988096859767e-10 Retinitis Pigmentosa, Dominant Retinitis Pigmentosa, Dominant 53665 chr19 35761435 35761435 1 + C A LUSC 35761431 + 35761411 35761451 41 AGGCACGATTTGCCTATTTCCCAGCGTCCAGTGTGGGAGAT AGGCACGATTTGCCTATTTCCCAGAGTCCAGTGTGGGAGAT < 41bp 0.453375066573106 0.822879452598133 0.88870317 0.90685123 prediction 0.645758905196266 Functional Gain - USF2 ENSG00000105698 CDS Human protein_coding chr19:35761431 chr19:35761435 nonsynonymous SNV 0.991 5 25 hm5C_associated_SNPs_100520 0 0 1 0 2 Cytosol 0.500231643921091 0.500231643921092 0.03629612 2.44249065417534e-15 hm5C_site_53665 DeepMRMD:0.03629612;iRNA_m5C:2.44249065417534e-15 53666 chr2 113820090 113820090 1 + C A LUAD 113820086 + 113820066 113820106 41 GAATCCAAGAGCTTCACCTTCTACCGGCGGGACATGGGGCT GAATCCAAGAGCTTCACCTTCTACAGGCGGGACATGGGGCT < 41bp 0.424340817835971 0.822876352823522 0.74094176 0.9275701 prediction 0.645752705647044 Functional Gain - IL36RN ENSG00000136695 CDS Human protein_coding chr2:113820086 chr2:113820090 synonymous SNV . 0 25 hm5C_associated_SNPs_100521 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.37325668 0 hm5C_site_53666 DeepMRMD:0.37325668;iRNA_m5C:0 53667 chr5 140589881 140589881 1 + C A LUSC 140589877 + 140589857 140589897 41 GTCCGCGAGAACAACAGCCCCGCCCTGCACATCGGCAGCAT GTCCGCGAGAACAACAGCCCCGCCATGCACATCGGCAGCAT < 41bp 0.563871154275179 0.886724178094082 0.04672718 0.33511358 prediction 0.645706047637806 Functional Gain - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140589877 chr5:140589881 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_100522 0 0 0 0 0 exosome 0.500231628530724 0.500231643154825 0 2.92482025265883e-08 hm5C_site_53667 DeepMRMD:0;iRNA_m5C:2.92482025265883e-08 53668 chr20 35169894 35169894 1 + C A rs528936233 35169890 + 35169870 35169910 41 CCCGGCCGCCACGCCCCGCCCCCGCCTGGAGTCCAGACCCG CCCGGCCGCCACGCCCCGCCCCCGACTGGAGTCCAGACCCG < 41bp 0.49189198971945 0.822846649496382 0.06576657 0.061377138 prediction 0.645693298992764 Functional Gain - DLGAP4-AS1 ENSG00000232907 ncRNA_intronic Human antisense chr20:35169890 chr20:35169894 . . 0 25 hm5C_associated_SNPs_100523 0 0 0 0 1 unknown 0.500231644649335 0.500231643993104 0 0 hm5C_site_53668 DeepMRMD:0;iRNA_m5C:0 53669 chr1 77510192 77510192 1 + C A LUAD 77510188 + 77510168 77510208 41 GGCAAGGGCCAGGTCTACAACAACCTGCATCTCCTGAGCCA GGCAAGGGCCAGGTCTACAACAACATGCATCTCCTGAGCCA < 41bp 0.566551847117928 0.889395897016152 0.45756984 0.503282 prediction 0.645688099796449 Functional Gain - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77510188 chr1:77510192 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100524 0 0 0 2 0 exosome 0.500231643921094 0.500231644482685 0.00656400000000001 1.12318354617003e-09 hm5C_site_53669 DeepMRMD:0.00656400000000001;iRNA_m5C:1.12318354617003e-09 53670 chr11 63883842 63883842 1 + C A PAAD 63883838 + 63883818 63883858 41 GCCACCATGGACCTGCGGGACTGGCTGTTCCTCTGCTACGG GCCACCATGGACCTGCGGGACTGGATGTTCCTCTGCTACGG < 41bp 0.54392359364241 0.866755636059332 0.14244092 0.24996743 prediction 0.645664084833844 Functional Gain - FLRT1 ENSG00000126500 CDS Human protein_coding chr11:63883838 chr11:63883842 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_100525 0 0 0 0 0 chromatin 0.500231643921096 0.500231643929433 0 1.66753277852649e-11 hm5C_site_53670 DeepMRMD:0;iRNA_m5C:1.66753277852649e-11 53671 chr2 132021821 132021821 1 + C A LUAD 132021817 + 132021797 132021837 41 CGAGCAGGAGATGGCCACGGCGGCCTCCAGCTCCTCCCTAG CGAGCAGGAGATGGCCACGGCGGCATCCAGCTCCTCCCTAG < 41bp 0.455773366927982 0.822830367796223 0.4908368 0.535561 prediction 0.645660735592447 Functional Gain - POTEE ENSG00000188219 CDS Human protein_coding chr2:132021817 chr2:132021821 synonymous SNV . 0 25 hm5C_associated_SNPs_100526 0 0 1 0 0 chromatin 0.500231643921406 0.500231643921095 0.0711219999999999 0 hm5C_site_53671 DeepMRMD:0.0711219999999999;iRNA_m5C:0 53672 chr19 757897 757897 1 + C A THCA 757893 + 757873 757913 41 GCAGAGGGGGCTTCGGCAGGCAACCGACCACCAGGAGCTGG GCAGAGGGGGCTTCGGCAGGCAACAGACCACCAGGAGCTGG < 41bp 0.442201995160194 0.822828635521922 0.4500972 0.4142298 prediction 0.645657271043843 Functional Gain - MISP ENSG00000099812 CDS Human protein_coding chr19:757893 chr19:757897 synonymous SNV . 0 25 hm5C_associated_SNPs_100527 0 0 0 0 0 nucleus 0.500231643930738 0.500231643921092 0 0 hm5C_site_53672 DeepMRMD:0;iRNA_m5C:0 53673 chr21 35303755 35303755 1 + C A rs8129169 35303751 + 35303731 35303771 41 CCTCGCCCTGCTTCGGCTCGCGCACGGTGCGCGCACCCACT CCTCGCCCTGCTTCGGCTCGCGCAAGGTGCGCGCACCCACT < 41bp 0.492386780388478 0.822814489880777 0.1621699 0.33073252 prediction 0.645628979761554 Functional Gain - LINC00649 ENSG00000237945 ncRNA_exonic Human antisense chr21:35303751 chr21:35303755 . . 0 25 hm5C_associated_SNPs_100528 0 0 0 0 0 unknown 0.500231643926581 0.500231643921384 0 0 hm5C_site_53673 DeepMRMD:0;iRNA_m5C:0 53674 chr12 56620196 56620196 1 + C A UCEC 56620192 + 56620172 56620212 41 GCCTACCACTGGACCCTCTGCTGCCTCTCCAGGTAAATCTG GCCTACCACTGGACCCTCTGCTGCATCTCCAGGTAAATCTG < 41bp 0.418172400007116 0.82281191985165 0.16535985 0.1351912 prediction 0.645623839703299 Functional Gain - NABP2 ENSG00000139579 CDS Human protein_coding chr12:56620192 chr12:56620196 synonymous SNV . 0 25 hm5C_associated_SNPs_100529 0 0 1 0 2 Ribosome 0.500231605767779 0.500231643996437 0 7.64573160338955e-08 hm5C_site_53674 DeepMRMD:0;iRNA_m5C:7.64573160338955e-08 53675 chr5 150051349 150051349 1 + C A LUSC 150051345 + 150051325 150051365 41 TGCCAATGGCCCTGAGGGGCCGAACTACCGCTCGGAGCTCC TGCCAATGGCCCTGAGGGGCCGAAATACCGCTCGGAGCTCC < 41bp 0.448580416724751 0.822783031790286 0.045074165 0.09646922 prediction 0.645566063580572 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150051345 chr5:150051349 nonsynonymous SNV 0.035 2 25 hm5C_associated_SNPs_100530 0 0 0 0 1 exosome 0.500231643921091 0.500231643867855 0 0 hm5C_site_53675 DeepMRMD:0;iRNA_m5C:0 53676 chr16 2258560 2258560 1 + C A THCA 2258556 + 2258536 2258576 41 AGCGGCAACCCCGGGGAGTCCTCCCGCGGCTGGATGTGGGG AGCGGCAACCCCGGGGAGTCCTCCAGCGGCTGGATGTGGGG < 41bp 0.56660433527302 0.889356108754948 0.26220644 0.9651244 prediction 0.645503546963856 Functional Gain - MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258556 chr16:2258560 nonsynonymous SNV 0.166 1 25 hm5C_associated_SNPs_100531 0 0 1 0 1 chromatin 0.500231643920958 0.500231643921092 0.9302488 2.68896016564213e-13 hm5C_site_53676 DeepMRMD:0.9302488;iRNA_m5C:2.68896016564213e-13 53677 chrX 114524351 114524351 1 + T G UCEC 114524348 + 114524328 114524368 41 GGCTTCGTTTCGGAAGCTAACGCTTTCTGAAAAAGTGCCGC GGCTTCGTTTCGGAAGCTAACGCGTTCTGAAAAAGTGCCGC < 41bp 0.523192652836822 0.845898823225244 0.25221324 0.55290085 prediction 0.645412340776844 Functional Gain - LUZP4 ENSG00000102021 CDS Human protein_coding chrX:114524348 chrX:114524351 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_100532 0 0 0 0 1 unknown 0.500231643921074 0.500231643924494 0.1058017 6.84008405471559e-12 hm5C_site_53677 DeepMRMD:0.1058017;iRNA_m5C:6.84008405471559e-12 53678 chr6 50683290 50683290 1 + C A LUAD 50683286 + 50683266 50683306 41 TCAAAGACTCCTGCCAGGGCCCAGCCTGGGGCTGGCCGCCG TCAAAGACTCCTGCCAGGGCCCAGACTGGGGCTGGCCGCCG < 41bp 0.451014949215919 0.822659142977033 0.050311625 0.09499577 prediction 0.645318285954067 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683286 chr6:50683290 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_100533 0 0 0 0 1 unknown 0.500231644700627 0.500231643921093 0 0 hm5C_site_53678 DeepMRMD:0;iRNA_m5C:0 53679 chr17 6915966 6915966 1 + C A UCEC 6915962 + 6915942 6915982 41 GGCTTTCTCCCACCGCTTTCCGAGCCCGCTTGCACCTCGGC GGCTTTCTCCCACCGCTTTCCGAGACCGCTTGCACCTCGGC < 41bp 0.515503187265276 0.838116029969643 0.7798958 0.8705819 prediction 0.645225685408734 Functional Gain - RNASEK ENSG00000219200;ENSG00000269871 CDS Human other chr17:6915962 chr17:6915966 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_100534 0 0 1 0 0 cytosol 0.500231643921092 0.500231643921092 0.1813722 0 hm5C_site_53679 DeepMRMD:0.1813722;iRNA_m5C:0 53680 chr1 114226153 114226153 1 + C A rs61742852 114226149 + 114226129 114226169 41 TCGAAGAATAGCAGGCTATACGGGCAGTAATGCTGAGCAGA TCGAAGAATAGCAGGCTATACGGGAAGTAATGCTGAGCAGA < 41bp 0.519900983516983 0.842509842377839 0.29846817 0.52120316 prediction 0.645217717721712 Functional Gain - MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114226149 chr1:114226153 synonymous SNV . 0 25 hm5C_associated_SNPs_100535 0 0 1 0 0 Cytosol 0.500231643921693 0.500231643921092 0.04240632 0 hm5C_site_53680 DeepMRMD:0.04240632;iRNA_m5C:0 53681 chr2 176965482 176965482 1 + C A BLCA 176965478 + 176965458 176965498 41 GCTTCGGGAGCAGGCGCTGGCGCTCTACTAGCCGCGCGCGT GCTTCGGGAGCAGGCGCTGGCGCTATACTAGCCGCGCGCGT < 41bp 0.465704692986385 0.822606559721591 0.8420166 0.88450205 prediction 0.645213119443183 Functional Gain - HOXD12 ENSG00000170178 CDS Human protein_coding chr2:176965478 chr2:176965482 synonymous SNV . 0 25 hm5C_associated_SNPs_100536 0 0 0 0 0 unknown 0.500231643921093 0.50023164392111 0.0849709000000001 3.46389583683049e-14 hm5C_site_53681 DeepMRMD:0.0849709000000001;iRNA_m5C:3.46389583683049e-14 53682 chr5 121786792 121786792 1 + C A BRCA 121786788 + 121786768 121786808 41 CCTGGATGGCCACAGCCCATCTCCCACCTCAGAGAGCAGCG CCTGGATGGCCACAGCCCATCTCCAACCTCAGAGAGCAGCG < 41bp 0.417989351700806 0.822572179075831 0.15581304 0.9592877 prediction 0.645144358151662 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121786788 chr5:121786792 synonymous SNV . 0 25 hm5C_associated_SNPs_100537 0 0 0 0 0 exosome 0.500231645359684 0.500231643675459 0.9185754 0 hm5C_site_53682 DeepMRMD:0.9185754;iRNA_m5C:0 53683 chr12 29486617 29486617 1 + C A rs148289062 29486613 + 29486593 29486633 41 ACTGCCCTCTTCCTTATCGCCTGGCGCCTTCTCATTGCAAG ACTGCCCTCTTCCTTATCGCCTGGAGCCTTCTCATTGCAAG < 41bp 0.460781474920305 0.82256359604429 0.6110182 0.66213006 prediction 0.645127192088581 Functional Gain - FAR2 ENSG00000064763 CDS Human protein_coding chr12:29486613 chr12:29486617 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100538 0 0 0 0 1 Cytosol 0.500231559444347 0.500231618915316 0.10222372 1.18941938076489e-07 hm5C_site_53683 DeepMRMD:0.10222372;iRNA_m5C:1.18941938076489e-07 53684 chr1 205039053 205039053 1 + C A CESC 205039049 + 205039029 205039069 41 CTGGCAGACCGCCCGGGTGCCTGGCGCCGATGCCCAGTACT CTGGCAGACCGCCCGGGTGCCTGGAGCCGATGCCCAGTACT < 41bp 0.43912275131933 0.822553909949095 0.555044 0.75490713 prediction 0.645107819898189 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205039049 chr1:205039053 synonymous SNV . 0 25 hm5C_associated_SNPs_100539 0 0 0 0 1 exosome 0.500231643921122 0.500231643921108 0.39972626 0 hm5C_site_53684 DeepMRMD:0.39972626;iRNA_m5C:0 53685 chr3 52538860 52538860 1 + C A BLCA 52538856 + 52538836 52538876 41 CGAAGGTGGTGGACGCTGGCCGGGCAGGAGATCACCGTCAC CGAAGGTGGTGGACGCTGGCCGGGAAGGAGATCACCGTCAC < 41bp 0.475246801051894 0.822543863489561 0.6260961 0.64113307 prediction 0.645087726979122 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52538856 chr3:52538860 nonsynonymous SNV 0.925 1 25 hm5C_associated_SNPs_100540 0 0 0 0 1 cytosol 0.500231572219011 0.500231639107272 0.0300739399999999 1.33776523192353e-07 hm5C_site_53685 DeepMRMD:0.0300739399999999;iRNA_m5C:1.33776523192353e-07 53686 chr16 27221460 27221460 1 + C A COAD 27221456 + 27221436 27221476 41 GGTGGCCCGATGGCTGGAGACACCCACTGCCCCGCAGAGCC GGTGGCCCGATGGCTGGAGACACCAACTGCCCCGCAGAGCC < 41bp 0.56717739675245 0.889719041903762 0.08797756 0.2247045 prediction 0.645083290302625 Functional Gain - KDM8 ENSG00000155666 CDS Human protein_coding chr16:27221456 chr16:27221460 nonsynonymous SNV 0.022 0 25 hm5C_associated_SNPs_100541 0 0 0 0 0 nucleolus 0.50023164392082 0.500231642537178 0 0 hm5C_site_53686 DeepMRMD:0;iRNA_m5C:0 53687 chr5 115298698 115298698 1 + T G BLCA 115298695 + 115298675 115298715 41 CCGGCCGGGTCTTTGCCCTTCACTGGCCGCGTGAACATCAC CCGGCCGGGTCTTTGCCCTTCACGGGCCGCGTGAACATCAC < 41bp 0.547998533946973 0.87053726361181 0.10422489 0.28961182 prediction 0.645077459329674 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115298695 chr5:115298698 synonymous SNV . 0 24 hm5C_associated_SNPs_100542 0 0 0 0 0 Cytosol 0.500231643921093 0.500231643921092 0 0 hm5C_site_53687 DeepMRMD:0;iRNA_m5C:0 53688 chr8 1574952 1574952 1 + C A LUAD 1574948 + 1574928 1574968 41 AGCGATGTGCCTGTGGGACACAGCCTGGACCCCGCTGCGAA AGCGATGTGCCTGTGGGACACAGCATGGACCCCGCTGCGAA < 41bp 0.434203028499535 0.822534633935281 0.040414035 0.13596302 prediction 0.645069267870562 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1574948 chr8:1574952 nonsynonymous SNV 0.982 4 25 hm5C_associated_SNPs_100543 0 0 0 0 1 nucleolus 0.500231646922718 0.500231643912379 0 0 hm5C_site_53688 DeepMRMD:0;iRNA_m5C:0 53689 chr1 43638021 43638021 1 + A C rs375902406 43638024 - 43638004 43638044 41 TTCAAACGCCGTAGCGGTTCCTATAGCAACGACAAACCGGA TTCAAACGCCGTAGCGGTTCCTAGAGCAACGACAAACCGGA < 41bp 0.46523415880955 0.82251665354285 0.25277057 0.29008213 prediction 0.645033307085699 Functional Gain - EBNA1BP2 ENSG00000117395 CDS Human protein_coding chr1:43638024 chr1:43638021 stopgain 0.995 0 24 hm5C_associated_SNPs_100544 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643915025 0 0 hm5C_site_53689 DeepMRMD:0;iRNA_m5C:0 53690 chr13 113540286 113540286 1 + C A rs573182624 113540282 + 113540262 113540302 41 CCCCTTTAGGGAGGTCCAGCCTCGCAAGCTGAAACCTCCCC CCCCTTTAGGGAGGTCCAGCCTCGAAAGCTGAAACCTCCCC < 41bp 0.501841549099321 0.824351719441553 0.8857086 0.9538667 prediction 0.645020340684463 Functional Gain - ATP11A ENSG00000068650 UTR3 Human protein_coding chr13:113540282 chr13:113540286 . . 0 25 hm5C_associated_SNPs_100545 0 0 0 0 0 Endoplasmic reticulum 0.500231643921096 0.500231644053669 0.1363162 2.65146127276239e-10 hm5C_site_53690 DeepMRMD:0.1363162;iRNA_m5C:2.65146127276239e-10 53691 chr19 47844573 47844573 1 + C A LUSC 47844569 + 47844549 47844589 41 CTCACCGTGCCCTCCGCCATCTACCGCCGGCTGCACCAGGA CTCACCGTGCCCTCCGCCATCTACAGCCGGCTGCACCAGGA < 41bp 0.566989485720231 0.889477722412328 0.20004603 0.5250108 prediction 0.644976473384195 Functional Gain - C5AR2 ENSG00000134830 CDS Human protein_coding chr19:47844569 chr19:47844573 nonsynonymous SNV 0.616 2 25 hm5C_associated_SNPs_100546 0 0 0 0 0 exosome 0.500231643921092 0.500231643921387 0.0500216 5.88862292261183e-13 hm5C_site_53691 DeepMRMD:0.0500216;iRNA_m5C:5.88862292261183e-13 53692 chr6 36270031 36270031 1 + C A LUAD 36270027 + 36270007 36270047 41 GCTCCACACCTGGTTCATCACTGCCCACCCCACCACCTGGA GCTCCACACCTGGTTCATCACTGCACACCCCACCACCTGGA < 41bp 0.570196604499477 0.892675058093462 0.053479612 0.20321184 prediction 0.644956907187969 Functional Gain - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36270027 chr6:36270031 nonsynonymous SNV 0.016 3 25 hm5C_associated_SNPs_100547 0 0 0 0 0 exosome 0.500231644003323 0.500231877701605 0 4.67396563008649e-07 hm5C_site_53692 DeepMRMD:0;iRNA_m5C:4.67396563008649e-07 53693 chr19 51361384 51361384 1 + T G PRAD 51361381 + 51361361 51361401 41 AGCTTCCCACACCCGCTCTACGATATGAGCCTCCTGAAGAA AGCTTCCCACACCCGCTCTACGAGATGAGCCTCCTGAAGAA < 41bp 0.55356322844462 0.87600094146158 0.04164028 0.29814276 prediction 0.644875426033921 Functional Gain - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51361381 chr19:51361384 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_100548 0 0 0 0 1 Cytosol 0.500231661267442 0.500231644987973 0 0 hm5C_site_53693 DeepMRMD:0;iRNA_m5C:0 53694 chr2 39944423 39944423 1 + C A rs142536971 39944419 + 39944399 39944439 41 CACTGGGCCTGTCCACAGTGCGAGCGACTCCTGAGGGGAAC CACTGGGCCTGTCCACAGTGCGAGAGACTCCTGAGGGGAAC < 41bp 0.526659070250378 0.849073368071849 0.31688604 0.5537835 prediction 0.644828595642942 Functional Gain - TMEM178A ENSG00000152154 UTR3 Human protein_coding chr2:39944419 chr2:39944423 . . 0 25 hm5C_associated_SNPs_100549 0 0 0 0 0 exosome 0.500231643917544 0.500231643748082 0.107567 0 hm5C_site_53694 DeepMRMD:0.107567;iRNA_m5C:0 53695 chr16 28995757 28995757 1 + C A rs7140 28995753 + 28995733 28995773 41 CGTGTGCCAGCTCCCAGACACTACCTGGGTAGCTCAGGGGA CGTGTGCCAGCTCCCAGACACTACATGGGTAGCTCAGGGGA < 41bp 0.452012305787209 0.822397231663766 0.032994837 0.89954984 prediction 0.644794463327532 Functional Gain - SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28995753 chr16:28995757 nonsynonymous SNV 0.955 1 25 hm5C_associated_SNPs_100550 0 1 1 0 0 chromatin 0.500231643915412 0.500231643920798 0.79909968 1.07718278741231e-11 hm5C_site_53695 DeepMRMD:0.79909968;iRNA_m5C:1.07718278741231e-11 53696 chr12 30949066 30949066 1 + T G rs564733186 30949063 + 30949043 30949083 41 ACCGCTCCGGGTGTCCTCCCCAGTGCGCCGCGATTTTTGTG ACCGCTCCGGGTGTCCTCCCCAGGGCGCCGCGATTTTTGTG < 41bp 0.524024816704061 0.846400385853971 0.5678234 0.9299567 prediction 0.644751138299819 Functional Gain - LINC00941 ENSG00000235884 ncRNA_exonic Human lincRNA chr12:30949063 chr12:30949066 . . 0 24 hm5C_associated_SNPs_100551 0 0 0 0 1 unknown 0.500231643941581 0.500231643922859 0.7242666 0 hm5C_site_53696 DeepMRMD:0.7242666;iRNA_m5C:0 53697 chr8 144296932 144296932 1 + C A LUAD 144296928 + 144296908 144296948 41 TGCAAGTCCCTGCCCAGGGACGAGCGCTGCAACCTGACGCA TGCAAGTCCCTGCCCAGGGACGAGAGCTGCAACCTGACGCA < 41bp 0.445718823273179 0.822346417338662 0.4402496 0.9003569 prediction 0.644692834677324 Functional Gain - GPIHBP1 ENSG00000182851 CDS Human other chr8:144296928 chr8:144296932 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_100552 0 0 0 0 2 exosome 0.500231643892371 0.500231649944647 0.8007138 1.21045518053364e-08 hm5C_site_53697 DeepMRMD:0.8007138;iRNA_m5C:1.21045518053364e-08 53698 chr14 20389631 20389631 1 + T G STAD 20389628 + 20389608 20389648 41 CCTAAACCCCATTATTTATACACTAAGGAATAGGGATATGA CCTAAACCCCATTATTTATACACGAAGGAATAGGGATATGA < 41bp 0.491610494587798 0.822315632962716 0.012188345 0.03946176 prediction 0.644631265925432 Functional Gain - OR4K5 ENSG00000176281 CDS Human protein_coding chr14:20389628 chr14:20389631 nonsynonymous SNV 0.319 3 24 hm5C_associated_SNPs_100553 0 0 0 0 0 unknown 0.500231643921092 0.500231643920448 0 0 hm5C_site_53698 DeepMRMD:0;iRNA_m5C:0 53699 chr8 92307853 92307853 1 + C A LUSC 92307849 + 92307829 92307869 41 TCTCACCACACAGAGTAACACAAGCGTGCTGGGCTTATCCG TCTCACCACACAGAGTAACACAAGAGTGCTGGGCTTATCCG < 41bp 0.556769707058043 0.879058297704486 0.41128623 0.5305898 prediction 0.644577181292886 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92307849 chr8:92307853 nonsynonymous SNV 0.368 2 25 hm5C_associated_SNPs_100554 0 0 0 0 2 membrane 0.500231295584977 0.500231732915238 0.0611796 8.74660521565929e-07 hm5C_site_53699 DeepMRMD:0.0611796;iRNA_m5C:8.74660521565929e-07 53700 chr17 4439403 4439403 1 + C A rs138268297 4439399 + 4439379 4439419 41 CATCCCCACGCGGCGCGCCACTGCCGTGGCCTTGCAGAGCT CATCCCCACGCGGCGCGCCACTGCAGTGGCCTTGCAGAGCT < 41bp 0.567670690545822 0.889941086608359 0.04745558 0.3785981 prediction 0.644540792125075 Functional Gain - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4439399 chr17:4439403 synonymous SNV . 0 25 hm5C_associated_SNPs_100555 0 0 0 0 2 Ribosome 0.500231643921092 0.50023164391878 0 0 hm5C_site_53700 DeepMRMD:0;iRNA_m5C:0 53701 chr7 140125756 140125756 1 + C A UCEC 140125752 + 140125732 140125772 41 TGCACACTGGCTGAGAAGTACGGCCTCCTGGCCGTTTTGGA TGCACACTGGCTGAGAAGTACGGCATCCTGGCCGTTTTGGA < 41bp 0.435937187543936 0.822237922420993 0.32845867 0.3146924 prediction 0.644475844841986 Functional Gain - RAB19 ENSG00000146955 CDS Human protein_coding chr7:140125752 chr7:140125756 nonsynonymous SNV 0.957 1 25 hm5C_associated_SNPs_100556 0 0 0 0 1 exosome 0.500231643921092 0.500231643922771 0 3.35709238186155e-12 hm5C_site_53701 DeepMRMD:0;iRNA_m5C:3.35709238186155e-12 53702 chr22 21141271 21141271 1 + C A rs552213670 21141267 + 21141247 21141287 41 ACCCAAGTCCGCTTCACTGTCGACCGCCCCTTTCTTTTCCT ACCCAAGTCCGCTTCACTGTCGACAGCCCCTTTCTTTTCCT < 41bp 0.553978140786012 0.876215924978175 0.13425428 0.09451571 prediction 0.644475568384325 Functional Gain - SERPIND1 ENSG00000099937 CDS Human protein_coding chr22:21141267 chr22:21141271 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_100557 0 0 1 0 0 cytosol 0.500231643921123 0.500231643921094 0 0 hm5C_site_53702 DeepMRMD:0;iRNA_m5C:0 53703 chr1 10689675 10689675 1 + C A SKCM 10689671 + 10689651 10689691 41 ACCGTCACCCTCCAGCCCTGCGGCCGTGAACCACCACAGCA ACCGTCACCCTCCAGCCCTGCGGCAGTGAACCACCACAGCA < 41bp 0.450068893789912 0.822193779088194 0.07789862 0.23397139 prediction 0.644387558176389 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10689671 chr1:10689675 synonymous SNV . 0 25 hm5C_associated_SNPs_100558 0 0 0 0 1 Ribosome 0.500227385312117 0.500231643720793 0 8.51681735380971e-06 hm5C_site_53703 DeepMRMD:0;iRNA_m5C:8.51681735380971e-06 53704 chr2 176972177 176972177 1 + C A LUSC 176972173 + 176972153 176972193 41 GCCCCGTCTGACTTCGCTAGCAAGCCTTCGTTCCTTTCCCA GCCCCGTCTGACTTCGCTAGCAAGACTTCGTTCCTTTCCCA < 41bp 0.483852552382398 0.822181565588604 0.84656036 0.9251727 prediction 0.644363131177208 Functional Gain - HOXD11 ENSG00000128713 CDS Human protein_coding chr2:176972173 chr2:176972177 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_100559 0 0 1 0 0 exosome 0.50023164856435 0.500231659104735 0.15722468 2.10807711287231e-08 hm5C_site_53704 DeepMRMD:0.15722468;iRNA_m5C:2.10807711287231e-08 53705 chr16 72142224 72142224 1 + T G COAD 72142221 + 72142201 72142241 41 GTTTACCTGCAGTGGAAGAACAATAATTACTCCACCATCTG GTTTACCTGCAGTGGAAGAACAAGAATTACTCCACCATCTG < 41bp 0.459677727295596 0.822162415003445 0.24872923 0.8934271 prediction 0.644324830006891 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142221 chr16:72142224 nonsynonymous SNV 0.998 2 24 hm5C_associated_SNPs_100560 0 0 1 0 1 Cytosol 0.500231644027008 0.500231644583352 0.7868542 1.11268749769522e-09 hm5C_site_53705 DeepMRMD:0.7868542;iRNA_m5C:1.11268749769522e-09 53706 chr19 55220848 55220848 1 + C A LUSC 55220844 + 55220824 55220864 41 CCACAGAAAACCCACTCTCTCAGCCCTGCCGAGCCCTGTGG CCACAGAAAACCCACTCTCTCAGCACTGCCGAGCCCTGTGG < 41bp 0.501847614712689 0.823997299157382 0.2753513 0.20798671 prediction 0.644299368889386 Functional Gain - LILRP2 ENSG00000170858 ncRNA_exonic Human transcribed_processed_pseudogene chr19:55220844 chr19:55220848 . . 0 25 hm5C_associated_SNPs_100561 0 0 0 0 1 unknown 0.500231643921093 0.500231643922559 0 2.93209900803504e-12 hm5C_site_53706 DeepMRMD:0;iRNA_m5C:2.93209900803504e-12 53707 chr19 42354622 42354622 1 + C A STAD 42354618 + 42354598 42354638 41 CTGGAGCCTCGTGCCTGGCCCGGACATCTGGTCCCTCAGAG CTGGAGCCTCGTGCCTGGCCCGGAAATCTGGTCCCTCAGAG < 41bp 0.453027234420511 0.822114665037989 0.46895427 0.65638095 prediction 0.644229330075978 Functional Gain - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42354618 chr19:42354622 nonsynonymous SNV 0.276 1 25 hm5C_associated_SNPs_100562 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.3127619 0 hm5C_site_53707 DeepMRMD:0.3127619;iRNA_m5C:0 53708 chr1 152784999 152784999 1 + C A UCEC 152784995 + 152784975 152785015 41 CCAAGTGCCCTCCCAAGTGCCTCACCCCTAGATGCCCCCCA CCAAGTGCCCTCCCAAGTGCCTCAACCCTAGATGCCCCCCA < 41bp 0.43664426502055 0.822112833755505 0.0057528913 0.05010903 prediction 0.64422566751101 Functional Gain - LCE1B ENSG00000196734 CDS Human protein_coding chr1:152784995 chr1:152784999 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_100563 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_53708 DeepMRMD:0;iRNA_m5C:0 53709 chr7 20793027 20793027 1 + C A rs148088276 20793023 + 20793003 20793043 41 ACTGAAAGGAGCACAGCTTTCTGGCGGCCAGAAACAAAGAC ACTGAAAGGAGCACAGCTTTCTGGAGGCCAGAAACAAAGAC < 41bp 0.554315874608208 0.876397239601496 0.24559963 0.25633523 prediction 0.644162729986577 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20793023 chr7:20793027 synonymous SNV . 0 25 hm5C_associated_SNPs_100564 0 0 0 0 1 exosome 0.500231643920705 0.50023164392046 0 0 hm5C_site_53709 DeepMRMD:0;iRNA_m5C:0 53710 chr1 156594455 156594455 1 + C A LIHC 156594451 + 156594431 156594471 41 CTGCTCGAGGGCTCCGTGCGCTACCCTGTGCTCACCGCACG CTGCTCGAGGGCTCCGTGCGCTACACTGTGCTCACCGCACG < 41bp 0.558455211198616 0.880528905118525 0.08169529 0.101450205 prediction 0.644147387839819 Functional Gain - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156594451 chr1:156594455 nonsynonymous SNV 0.919 4 25 hm5C_associated_SNPs_100565 0 0 1 0 1 exosome 0.500231638342249 0.500232538290751 0 1.79989700321848e-06 hm5C_site_53710 DeepMRMD:0;iRNA_m5C:1.79989700321848e-06 53711 chr6 3287326 3287326 1 + C A UCEC 3287322 + 3287302 3287342 41 TGGTGGATCCCGTACCCCGTCAGCCTGTGGAGACATACCGA TGGTGGATCCCGTACCCCGTCAGCATGTGGAGACATACCGA < 41bp 0.457398019627652 0.822025927743964 0.22442526 0.32845706 prediction 0.644051855487928 Functional Gain - SLC22A23 ENSG00000137266 splicing Human protein_coding chr6:3287322 chr6:3287326 . 0.783 0 25 hm5C_associated_SNPs_100566 0 0 0 0 0 Endoplasmic reticulum 0.500231643921098 0.500231643921878 0 1.5603074388082e-12 hm5C_site_53711 DeepMRMD:0;iRNA_m5C:1.5603074388082e-12 53712 chr3 107097226 107097226 1 + T G LUAD 107097223 + 107097203 107097243 41 GGAAAATGGACATTTTTCCTCAGTGCTACCAAGTTAGAAGA GGAAAATGGACATTTTTCCTCAGGGCTACCAAGTTAGAAGA < 41bp 0.530563302625544 0.85257376880824 0.020879537 0.9296305 prediction 0.644020932365392 Functional Gain - CCDC54 ENSG00000138483 CDS Human protein_coding chr3:107097223 chr3:107097226 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_100567 0 0 0 0 0 unknown 0.500231546391088 0.500231643914461 0.859261 1.950467445333e-07 hm5C_site_53712 DeepMRMD:0.859261;iRNA_m5C:1.950467445333e-07 53713 chr19 39899199 39899199 1 + C A HNSC 39899195 + 39899175 39899215 41 TCTGTACAGTCCCTGGGATCCGACCCTGATGAATATGCCAG TCTGTACAGTCCCTGGGATCCGACACTGATGAATATGCCAG < 41bp 0.447509203357418 0.821999457211828 0.19923854 0.32346576 prediction 0.643998914423656 Functional Gain - ZFP36 ENSG00000128016 CDS Human protein_coding chr19:39899195 chr19:39899199 nonsynonymous SNV 0.095 0 25 hm5C_associated_SNPs_100568 0 0 1 0 0 nucleus 0.500231643920994 0.500231643921111 0 2.33146835171283e-13 hm5C_site_53713 DeepMRMD:0;iRNA_m5C:2.33146835171283e-13 53714 chr6 160328093 160328093 1 + C A COAD 160328089 + 160328069 160328109 41 GCACATCGGCAAATCCCCATCGTGCACTGGGTCATTATGAG GCACATCGGCAAATCCCCATCGTGAACTGGGTCATTATGAG < 41bp 0.467508312599741 0.821983621203004 0.21849546 0.4638339 prediction 0.643967242406008 Functional Gain - MAS1 ENSG00000130368 CDS Human protein_coding chr6:160328089 chr6:160328093 nonsynonymous SNV 0.910 0 25 hm5C_associated_SNPs_100569 0 0 0 0 0 exosome 0.500231643921104 0.50023164392083 0 0 hm5C_site_53714 DeepMRMD:0;iRNA_m5C:0 53715 chr12 100796224 100796224 1 + C A SKCM 100796220 + 100796200 100796240 41 GGAGAAGACCTATATAGAGACAAGCATAGGAGAGGGGGCCA GGAGAAGACCTATATAGAGACAAGAATAGGAGAGGGGGCCA < 41bp 0.43783214150477 0.821983590085053 0.12636876 0.31760648 prediction 0.643967180170106 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100796220 chr12:100796224 nonsynonymous SNV 0.978 4 25 hm5C_associated_SNPs_100570 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53715 DeepMRMD:0;iRNA_m5C:0 53716 chr21 45846599 45846599 1 + C A rs530123792 45846595 + 45846575 45846615 41 CACGGCAGAGAGGAAGGACGCGGCCGCCATGGACCCCATGG CACGGCAGAGAGGAAGGACGCGGCAGCCATGGACCCCATGG < 41bp 0.449428338972803 0.821963087498237 0.45577866 0.5310784 prediction 0.643926174996475 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45846595 chr21:45846599 synonymous SNV . 0 25 hm5C_associated_SNPs_100571 0 0 0 0 2 Ribosome 0.500231645148044 0.500231643922288 0.0621567999999999 0 hm5C_site_53716 DeepMRMD:0.0621567999999999;iRNA_m5C:0 53717 chr4 1389433 1389433 1 + C A rs145208075 1389429 + 1389409 1389449 41 GGAGTGCCCGCCTGCTCACACGTGCCCATGTGGAGTGCCTG GGAGTGCCCGCCTGCTCACACGTGACCATGTGGAGTGCCTG < 41bp 0.498804300165602 0.82194937401884 0.32343188 0.14584044 prediction 0.643898748037679 Functional Gain - CRIPAK ENSG00000179979 CDS Human protein_coding chr4:1389429 chr4:1389433 stopgain 0.005 0 25 hm5C_associated_SNPs_100572 0 0 1 0 0 chromatin 0.500231643922102 0.500231644121569 0 3.98933108769484e-10 hm5C_site_53717 DeepMRMD:0;iRNA_m5C:3.98933108769484e-10 53718 chr1 204985663 204985663 1 + C A LUAD 204985659 + 204985639 204985679 41 CTGTCAATGCTATCTACTCTCTGGCCTAACGGAGCCCACCC CTGTCAATGCTATCTACTCTCTGGACTAACGGAGCCCACCC < 41bp 0.500646910753836 0.822562585178496 0.13042966 0.22551388 prediction 0.64383134884932 Functional Gain - NFASC ENSG00000163531 CDS Human protein_coding chr1:204985659 chr1:204985663 nonsynonymous SNV 0.959 4 25 hm5C_associated_SNPs_100573 0 0 0 0 0 exosome 0.500231643921093 0.500231643921093 0 4.44089209850063e-16 hm5C_site_53718 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 53719 chr2 113819753 113819753 1 + C A SKCM 113819749 + 113819729 113819769 41 GTGGCTGGATGCCAGCCTGTCCCCCGTCATCCTGGGTGTCC GTGGCTGGATGCCAGCCTGTCCCCAGTCATCCTGGGTGTCC < 41bp 0.425633199044779 0.821914604701319 0.045858562 0.039841056 prediction 0.643829209402638 Functional Gain - IL36RN ENSG00000136695 CDS Human protein_coding chr2:113819749 chr2:113819753 synonymous SNV . 0 25 hm5C_associated_SNPs_100574 0 0 0 0 2 exosome 0.500231629820057 0.500231560796992 0 0 hm5C_site_53719 DeepMRMD:0;iRNA_m5C:0 53720 chr3 98188809 98188809 1 + T G LUSC 98188806 + 98188786 98188826 41 CTATGTGGCCATATGCAACCCACTGCAGTACCACATCATGA CTATGTGGCCATATGCAACCCACGGCAGTACCACATCATGA < 41bp 0.531974234099383 0.853884921536014 0.02003488 0.009557128 prediction 0.643821374873262 Functional Gain - OR5K1 ENSG00000232382 CDS Human protein_coding chr3:98188806 chr3:98188809 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_100575 0 0 0 0 0 unknown 0.500228295915993 0.500231643921124 0 6.6960102620417e-06 hm5C_site_53720 DeepMRMD:0;iRNA_m5C:6.6960102620417e-06 53721 chr5 175110245 175110245 1 + C A PRAD 175110241 + 175110221 175110261 41 GCCGTAGAGTCCCAGGATGGCACCCAATGGCACAGCCTCTT GCCGTAGAGTCCCAGGATGGCACCAAATGGCACAGCCTCTT < 41bp 0.442756483250134 0.821888686128303 0.121435344 0.20327327 prediction 0.643777372256605 Functional Gain - HRH2 ENSG00000113749 CDS Human protein_coding chr5:175110241 chr5:175110245 synonymous SNV . 0 25 hm5C_associated_SNPs_100576 0 0 0 0 0 nucleus 0.500231643921092 0.500231523062836 0 0 hm5C_site_53721 DeepMRMD:0;iRNA_m5C:0 53722 chr1 65129424 65129424 1 + T G PAAD 65129421 + 65129401 65129441 41 GCTGGCAGCTTTTCCTCCCCCTATGAGCACCTCAGCCAGCC GCTGGCAGCTTTTCCTCCCCCTAGGAGCACCTCAGCCAGCC < 41bp 0.465349947597809 0.821882948850776 0.10867962 0.23710144 prediction 0.643765897701553 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65129421 chr1:65129424 stopgain 0.989 1 24 hm5C_associated_SNPs_100577 0 0 0 0 2 unknown 0.500231643921094 0.500231643921092 0 0 hm5C_site_53722 DeepMRMD:0;iRNA_m5C:0 53723 chr5 42800878 42800878 1 + T G UCEC 42800875 + 42800855 42800895 41 ATTCTTTCAGCGTCAACTGGCACTGGCTTCTGTGGGTATAA ATTCTTTCAGCGTCAACTGGCACGGGCTTCTGTGGGTATAA < 41bp 0.531324831878533 0.853195759456535 0.14174828 0.79645216 prediction 0.643741855156005 Functional Gain - SELENOP ENSG00000250722 CDS Human protein_coding chr5:42800875 chr5:42800878 unknown 0.240 1 24 hm5C_associated_SNPs_100578 0 0 0 2 0 unknown 0.500231654990701 0.500231643921092 0.59290432 0 hm5C_site_53723 DeepMRMD:0.59290432;iRNA_m5C:0 53724 chr16 30035142 30035142 1 + C A LUSC 30035138 + 30035118 30035158 41 CTTCTTCGATTATCCGGACTCAGACCAAGCCAGGCTGCTGG CTTCTTCGATTATCCGGACTCAGAACAAGCCAGGCTGCTGG < 41bp 0.46168291333308 0.821854910409867 0.42401916 0.24927661 prediction 0.643709820819733 Functional Gain - C16orf92 ENSG00000167194 CDS Human protein_coding chr16:30035138 chr16:30035142 nonsynonymous SNV 0.794 4 25 hm5C_associated_SNPs_100579 0 0 0 0 2 unknown 0.500231730704641 0.500231645472693 0 0 hm5C_site_53724 DeepMRMD:0;iRNA_m5C:0 53725 chr1 172635069 172635069 1 + T G PRAD 172635066 + 172635046 172635086 41 GGGGCAGTGTTCAATCTTACCAGTGCTGATCATTTATATGT GGGGCAGTGTTCAATCTTACCAGGGCTGATCATTTATATGT < 41bp 0.542826979715945 0.864671623995615 0.17855188 0.9044302 prediction 0.64368928855934 Functional Gain - FASLG ENSG00000117560 CDS Human protein_coding chr1:172635066 chr1:172635069 nonsynonymous SNV 0.972 0 24 hm5C_associated_SNPs_100580 0 0 0 1 0 exosome 0.500231638404644 0.500231643919708 0.8088604 1.10301281441849e-08 hm5C_site_53725 DeepMRMD:0.8088604;iRNA_m5C:1.10301281441849e-08 53726 chr6 405027 405027 1 + C A rs568315642 405023 + 405003 405043 41 TGTGGGCTTCTACAGAGCTGCAAGCGTTTGCTCACCACGGC TGTGGGCTTCTACAGAGCTGCAAGAGTTTGCTCACCACGGC < 41bp 0.458077947526763 0.82182625601836 0.55222815 0.5140168 prediction 0.64365251203672 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:405023 chr6:405027 nonsynonymous SNV 0.245 1 25 hm5C_associated_SNPs_100581 0 0 0 0 1 exosome 0.500305202930723 0.500231650102254 0 0 hm5C_site_53726 DeepMRMD:0;iRNA_m5C:0 53727 chr11 4566905 4566905 1 + C A UCEC 4566901 + 4566881 4566921 41 GTGTTCTCTACATTGGACCTCTGCCTCTGATGATCCGCCTG GTGTTCTCTACATTGGACCTCTGCATCTGATGATCCGCCTG < 41bp 0.455276269085654 0.821823563385672 0.16641277 0.30382204 prediction 0.643647126771343 Functional Gain - OR52M1 ENSG00000197790 CDS Human protein_coding chr11:4566901 chr11:4566905 nonsynonymous SNV 0.908 3 25 hm5C_associated_SNPs_100582 0 0 0 0 0 unknown 0.50023163904097 0.500231531125087 0 0 hm5C_site_53727 DeepMRMD:0;iRNA_m5C:0 53728 chr15 60297399 60297399 1 + C A LUAD 60297395 + 60297375 60297415 41 CATCAAGATCCCGCGGCGGCCGGACCAGCCAGGCAAGGGCA CATCAAGATCCCGCGGCGGCCGGAACAGCCAGGCAAGGGCA < 41bp 0.452298034254374 0.821804296396328 0.12823594 0.28138673 prediction 0.643608592792657 Functional Gain - FOXB1 ENSG00000171956 CDS Human protein_coding chr15:60297395 chr15:60297399 nonsynonymous SNV 0.927 2 25 hm5C_associated_SNPs_100583 0 0 0 0 0 exosome 0.500231850401238 0.500231643916339 0 0 hm5C_site_53728 DeepMRMD:0;iRNA_m5C:0 53729 chr12 108912966 108912966 1 + C A UCEC 108912962 + 108912942 108912982 41 ATTATAAACTCGTTTACATCCACCCTTTCATTGATGGCAAC ATTATAAACTCGTTTACATCCACCATTTCATTGATGGCAAC < 41bp 0.42415716180351 0.821800266129094 0.05896145 0.084831774 prediction 0.643600532258188 Functional Gain - FICD ENSG00000198855 CDS Human protein_coding chr12:108912962 chr12:108912966 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100584 0 0 0 0 0 chromatin 0.500231643921114 0.500231636863487 0 0 hm5C_site_53729 DeepMRMD:0;iRNA_m5C:0 53730 chr20 31873889 31873889 1 + C A KIRC 31873885 + 31873865 31873905 41 CTGACACCTGGGAAGATGGCCGGCCCGTGGACCTTCACCCT CTGACACCTGGGAAGATGGCCGGCACGTGGACCTTCACCCT < 41bp 0.449506283070622 0.821799863288955 0.17031538 0.40264368 prediction 0.643599726577909 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31873885 chr20:31873889 nonsynonymous SNV 0.205 1 25 hm5C_associated_SNPs_100585 0 0 0 0 1 exosome 0.500231643847571 0.50023164392112 0 1.47097667380081e-10 hm5C_site_53730 DeepMRMD:0;iRNA_m5C:1.47097667380081e-10 53731 chr9 111625398 111625398 1 + C A LUAD 111625394 + 111625374 111625414 41 AACAGTGCGGGGAACGAATTCACCCAGGACCAGATGGGCAT AACAGTGCGGGGAACGAATTCACCAAGGACCAGATGGGCAT < 41bp 0.569846959387466 0.891643067555949 0.12658942 0.3937349 prediction 0.643592216336966 Functional Gain - ACTL7A ENSG00000187003 CDS Human protein_coding chr9:111625394 chr9:111625398 nonsynonymous SNV 0.639 1 25 hm5C_associated_SNPs_100586 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_53731 DeepMRMD:0;iRNA_m5C:0 53732 chr4 69978304 69978304 1 + C A HNSC 69978300 + 69978280 69978320 41 AGCTAAACACCTTCGGGTTGCAGCCCACGACCTCACCTGGT AGCTAAACACCTTCGGGTTGCAGCACACGACCTCACCTGGT < 41bp 0.452868651038887 0.821771600782147 0.13695583 0.41351837 prediction 0.643543201564294 Functional Gain - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69978300 chr4:69978304 synonymous SNV . 0 25 hm5C_associated_SNPs_100587 0 0 1 0 0 Endoplasmic reticulum 0.500231292297124 0.500231648572013 0 7.12549777182048e-07 hm5C_site_53732 DeepMRMD:0;iRNA_m5C:7.12549777182048e-07 53733 chr14 105397270 105397270 1 + C A rs143703446 105397266 + 105397246 105397286 41 CTTTGATGGGGTGCCCACCACTGCCTACTTCTCAGTAAGAC CTTTGATGGGGTGCCCACCACTGCATACTTCTCAGTAAGAC < 41bp 0.422877957294675 0.821763631890508 0.19412723 0.5780739 prediction 0.643527263781016 Functional Gain - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105397266 chr14:105397270 synonymous SNV . 0 25 hm5C_associated_SNPs_100588 0 0 0 0 1 exosome 0.500231661399553 0.500231667405992 0.1561478 1.20128782477025e-08 hm5C_site_53733 DeepMRMD:0.1561478;iRNA_m5C:1.20128782477025e-08 53734 chr8 37996519 37996519 1 + C A CHOL 37996515 + 37996495 37996535 41 GCTGGGGCGCCGTGGTAGAGCACACCCTGGCTGACGTCTTG GCTGGGGCGCCGTGGTAGAGCACAACCTGGCTGACGTCTTG < 41bp 0.447621714958865 0.821757017212708 0.040037185 0.06993401 prediction 0.643514034425416 Functional Gain - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37996515 chr8:37996519 nonsynonymous SNV 0.452 4 25 hm5C_associated_SNPs_100589 0 0 1 0 1 chromatin 0.500231643213994 0.500231643707135 0 9.86282167048103e-10 hm5C_site_53734 DeepMRMD:0;iRNA_m5C:9.86282167048103e-10 53735 chr20 44003803 44003803 1 + G T LUAD 44003807 - 44003787 44003827 41 AGTGGATCTGGTTTGAGGGGCTGCCCACACGAATCCACCTC AGTGGATCTGGTTTGAGGGGCTGCACACACGAATCCACCTC < 41bp 0.431448586889535 0.821704021652522 0.070566684 0.070127904 prediction 0.643408043305043 Functional Gain - TP53TG5 ENSG00000124251 CDS Human protein_coding chr20:44003807 chr20:44003803 nonsynonymous SNV 0.959 4 25 hm5C_associated_SNPs_100590 0 0 0 0 0 nucleus 0.500231617346604 0.500231643921279 0 5.31493486999324e-08 hm5C_site_53735 DeepMRMD:0;iRNA_m5C:5.31493486999324e-08 53736 chr9 34977182 34977182 1 + C A SKCM 34977178 + 34977158 34977198 41 ACCGTCAGTGAGGCAGAGTGCCGCCGGGCCCAGCACTCTTG ACCGTCAGTGAGGCAGAGTGCCGCAGGGCCCAGCACTCTTG < 41bp 0.435575625948477 0.821703643454601 0.330399 0.338876 prediction 0.643407286909202 Functional Gain - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34977178 chr9:34977182 synonymous SNV . 0 25 hm5C_associated_SNPs_100591 0 0 0 0 1 exosome 0.500231643919852 0.500231643883013 0 0 hm5C_site_53736 DeepMRMD:0;iRNA_m5C:0 53737 chr10 135053272 135053272 1 + C A LUAD 135053268 + 135053248 135053288 41 CGCACCTTGGAGGGCGTCTTCCAGCACCACCAGTACCTGAG CGCACCTTGGAGGGCGTCTTCCAGAACCACCAGTACCTGAG < 41bp 0.442359706822762 0.821688350703524 0.33538818 0.84398705 prediction 0.643376701407048 Functional Gain - VENTX ENSG00000151650 CDS Human protein_coding chr10:135053268 chr10:135053272 nonsynonymous SNV 0.030 1 25 hm5C_associated_SNPs_100592 0 0 0 0 1 Nucleus 0.500231643925381 0.500231643921091 0.6879741 0 hm5C_site_53737 DeepMRMD:0.6879741;iRNA_m5C:0 53738 chr3 98109910 98109910 1 + C A LUAD 98109906 + 98109886 98109926 41 TATGCAACCCACTGCAGTACCACACCATGATGTCCAAGACA TATGCAACCCACTGCAGTACCACAACATGATGTCCAAGACA < 41bp 0.543024018146351 0.864663048867705 0.077674806 0.24071306 prediction 0.643278061442709 Functional Gain - OR5K3 ENSG00000206536 CDS Human protein_coding chr3:98109906 chr3:98109910 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_100593 0 0 0 0 0 unknown 0.500231636424857 0.500231613127294 0 0 hm5C_site_53738 DeepMRMD:0;iRNA_m5C:0 53739 chr18 28934868 28934868 1 + T G COAD 28934865 + 28934845 28934885 41 GAAAGGGTAATAGCACCAAGCTCTAGTCTACCCACCTCTCT GAAAGGGTAATAGCACCAAGCTCGAGTCTACCCACCTCTCT < 41bp 0.472739016421184 0.821631351740543 0.14471912 0.15321493 prediction 0.643262703481086 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28934865 chr18:28934868 synonymous SNV . 0 24 hm5C_associated_SNPs_100594 0 0 0 0 0 unknown 0.50023164380601 0.500231643826781 0 4.15418810462143e-11 hm5C_site_53739 DeepMRMD:0;iRNA_m5C:4.15418810462143e-11 53740 chr16 58314185 58314185 1 + C A UCEC 58314181 + 58314161 58314201 41 GGAAACCAAGATGATTTCTTCGGGCTGATACAACCTGTTCT GGAAACCAAGATGATTTCTTCGGGATGATACAACCTGTTCT < 41bp 0.548910773584332 0.870532847040869 0.9067228 0.9025882 prediction 0.643244146913073 Functional Gain - PRSS54 ENSG00000103023 CDS Human protein_coding chr16:58314181 chr16:58314185 nonsynonymous SNV 0.014 2 25 hm5C_associated_SNPs_100595 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53740 DeepMRMD:0;iRNA_m5C:0 53741 chr19 4234688 4234688 1 + T G PRAD 4234686 + 4234666 4234706 41 AAGCCCGACCCTCCAGAAGGCGTGCGCCTAAGCCCCCTCGC AAGCCCGACCCTCCAGAAGGCGGGCGCCTAAGCCCCCTCGC < 41bp 0.483972145252211 0.821613422338146 0.1538626 0.932694 prediction 0.643226844676292 Functional Gain - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4234686 chr19:4234688 nonsynonymous SNV 0.143 3 23 hm5C_associated_SNPs_100596 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.865388 0 hm5C_site_53741 DeepMRMD:0.865388;iRNA_m5C:0 53742 chr19 1083225 1083225 1 + C A COAD 1083221 + 1083201 1083241 41 GGCCCACGCTGCTTCGGCCACGGCCCACCGAGGCCACCGTG GGCCCACGCTGCTTCGGCCACGGCACACCGAGGCCACCGTG < 41bp 0.428767356078019 0.821611975185999 0.5373667 0.44517574 prediction 0.643223950371997 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1083221 chr19:1083225 nonsynonymous SNV 0.656 3 25 hm5C_associated_SNPs_100597 0 0 0 0 1 chromatin 0.500231643921092 0.500231643922585 0 2.98538971321705e-12 hm5C_site_53742 DeepMRMD:0;iRNA_m5C:2.98538971321705e-12 53743 chr3 52281754 52281754 1 + C A STAD 52281750 + 52281730 52281770 41 AGGCCAGATGGGCGGCTGCACAGCCCTGGTGGCTGTGTCCC AGGCCAGATGGGCGGCTGCACAGCACTGGTGGCTGTGTCCC < 41bp 0.56419663425731 0.885805279954818 0.28273743 0.31770962 prediction 0.643217291395015 Functional Gain - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52281750 chr3:52281754 synonymous SNV . 0 25 hm5C_associated_SNPs_100598 0 0 0 0 2 chromatin 0.500231643921092 0.500231641518344 0 0 hm5C_site_53743 DeepMRMD:0;iRNA_m5C:0 53744 chr7 150069801 150069801 1 + G T ESCA 150069805 - 150069785 150069825 41 TCTGGCTGAAGGCTTTGCCGCAGTCGGGGCAGACGTAGGGC TCTGGCTGAAGGCTTTGCCGCAGTAGGGGCAGACGTAGGGC < 41bp 0.516359564222106 0.837942930472412 0.82629895 0.8767253 prediction 0.643166732500612 Functional Gain - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150069805 chr7:150069801 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_100599 0 0 0 0 0 Endoplasmic reticulum 0.500231643444061 0.500232176814206 0.1008527 1.06674028899079e-06 hm5C_site_53744 DeepMRMD:0.1008527;iRNA_m5C:1.06674028899079e-06 53745 chr2 241564980 241564980 1 + C A rs13019955 241564976 + 241564956 241564996 41 CTCCACCCGGGAGGCCAAAGCTGCCTGCAGGTCAGTGCCGC CTCCACCCGGGAGGCCAAAGCTGCATGCAGGTCAGTGCCGC < 41bp 0.501807443418999 0.823384494580283 0.21747121 0.25291675 prediction 0.643154102322568 Functional Gain - GPR35 ENSG00000178623 UTR5 Human protein_coding chr2:241564976 chr2:241564980 . . 0 25 hm5C_associated_SNPs_100600 0 0 1 0 1 Ribosome 0.500231643919704 0.500231643921143 0 2.87880830285303e-12 hm5C_site_53745 DeepMRMD:0;iRNA_m5C:2.87880830285303e-12 53746 chr11 4608223 4608223 1 + C A LUAD 4608219 + 4608199 4608239 41 TCACATCTTTGGCTGGCTATCTCACTGAGTGCCATGTACAT TCACATCTTTGGCTGGCTATCTCAATGAGTGCCATGTACAT < 41bp 0.44900610084569 0.821571616257347 0.027069837 0.4763664 prediction 0.643143232514693 Functional Gain - OR52I2 ENSG00000226288 CDS Human protein_coding chr11:4608219 chr11:4608223 nonsynonymous SNV 0.853 1 25 hm5C_associated_SNPs_100601 0 0 0 0 0 unknown 0.50023164156943 0.500231643920986 0 4.70311345424079e-09 hm5C_site_53746 DeepMRMD:0;iRNA_m5C:4.70311345424079e-09 53747 chr7 100389695 100389695 1 + C A LUSC 100389691 + 100389671 100389711 41 AGCTGGCGAGCAACAGCACCCAGGCCTGTAGGGTGCTGGCA AGCTGGCGAGCAACAGCACCCAGGACTGTAGGGTGCTGGCA < 41bp 0.490243994723567 0.821524745678191 0.80451703 0.7964298 prediction 0.643049491356382 Functional Gain - ZAN ENSG00000146839 CDS Human protein_coding chr7:100389691 chr7:100389695 nonsynonymous SNV 0.980 1 25 hm5C_associated_SNPs_100602 0 0 0 0 0 cytosol 0.500231643921132 0.500231643921092 0 0 hm5C_site_53747 DeepMRMD:0;iRNA_m5C:0 53748 chr5 140720718 140720718 1 + C A GBM 140720714 + 140720694 140720734 41 GGCACAAGTCACGCCTGCTGCAGGCTTCAGGAGGCAGCTTG GGCACAAGTCACGCCTGCTGCAGGATTCAGGAGGCAGCTTG < 41bp 0.533579512681322 0.855084916567616 0.86720824 0.8799822 prediction 0.643010807772589 Functional Gain - PCDHGA2 ENSG00000081853 CDS Human protein_coding chr5:140720714 chr5:140720718 nonsynonymous SNV 0.017 0 25 hm5C_associated_SNPs_100603 0 0 0 0 0 exosome 0.500216395011997 0.5002316623686 0.0255479200000002 3.05347132059097e-05 hm5C_site_53748 DeepMRMD:0.0255479200000002;iRNA_m5C:3.05347132059097e-05 53749 chr6 53660073 53660073 1 + C A UCEC 53660069 + 53660049 53660089 41 GCGGCGATGTTCCACTGCATCCCCCTGTGGCGGTGCAACCG GCGGCGATGTTCCACTGCATCCCCATGTGGCGGTGCAACCG < 41bp 0.442453660079868 0.821460452858559 0.05105403 0.19041836 prediction 0.642920905717119 Functional Gain - LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660069 chr6:53660073 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_100604 0 0 1 0 0 Ribosome 0.500231643890866 0.500206212572768 0 0 hm5C_site_53749 DeepMRMD:0;iRNA_m5C:0 53750 chr6 52546712 52546712 1 + T G UCEC 52546709 + 52546689 52546729 41 AACGAGATGTAAAAGTGTCACTGTGTAAGTAAGGCATTTTT AACGAGATGTAAAAGTGTCACTGGGTAAGTAAGGCATTTTT < 41bp 0.473879525817983 0.821438278611551 0.021723568 0.16718796 prediction 0.642876557223102 Functional Gain - TMEM14A ENSG00000096092 CDS Human protein_coding chr6:52546709 chr6:52546712 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_100605 0 0 0 0 1 Ribosome 0.500234605078086 0.500231643870942 0 0 hm5C_site_53750 DeepMRMD:0;iRNA_m5C:0 53751 chr7 35945288 35945288 1 + C A rs112122763 35945284 + 35945264 35945304 41 GGATTGCAGGCGTGCACCACCACGCCTGGCTAATTTTTGTA GGATTGCAGGCGTGCACCACCACGACTGGCTAATTTTTGTA < 41bp 0.475364736238587 0.821434212082412 0.19473106 0.12185007 prediction 0.642868424164825 Functional Gain - SEPT7 ENSG00000122545 downstream Human protein_coding chr7:35945284 chr7:35945288 . . 0 25 hm5C_associated_SNPs_100606 0 0 1 0 0 chromatin 0.500231642646167 0.500231643783645 0 2.27495577931336e-09 hm5C_site_53751 DeepMRMD:0;iRNA_m5C:2.27495577931336e-09 53752 chr19 990234 990234 1 + C A HNSC 990230 + 990210 990250 41 CCACCCCGCTCAGCGTGCTGCAGGCCGACCCCTCCAGGATT CCACCCCGCTCAGCGTGCTGCAGGACGACCCCTCCAGGATT < 41bp 0.538755045289506 0.860123155252411 0.5310509 0.6512665 prediction 0.642736219925809 Functional Gain - WDR18 ENSG00000065268 CDS Human protein_coding chr19:990230 chr19:990234 nonsynonymous SNV 0.723 0 25 hm5C_associated_SNPs_100607 0 0 1 0 0 Ribosome 0.500231643920155 0.500231643256025 0.2404312 0 hm5C_site_53752 DeepMRMD:0.2404312;iRNA_m5C:0 53753 chr11 5602940 5602940 1 + C A UCEC 5602936 + 5602916 5602956 41 CTATGTCCCTGCGCTTTTTTCTGTCTTTGCCTACAGGTTTG CTATGTCCCTGCGCTTTTTTCTGTATTTGCCTACAGGTTTG < 41bp 0.52865673549695 0.850010460816328 0.188142 0.20361981 prediction 0.642707450638756 Functional Gain - OR52B6 ENSG00000187747 CDS Human protein_coding chr11:5602936 chr11:5602940 synonymous SNV . 0 25 hm5C_associated_SNPs_100608 0 0 0 0 0 unknown 0.500231643920709 0.500231643921043 0 6.69020394639119e-13 hm5C_site_53753 DeepMRMD:0;iRNA_m5C:6.69020394639119e-13 53754 chr19 44501815 44501815 1 + C A rs56101767 44501811 + 44501791 44501831 41 GGTCCCTGGAGACCCCCAGCCAAACGGGTCAGTGTCTCATC GGTCCCTGGAGACCCCCAGCCAAAAGGGTCAGTGTCTCATC < 41bp 0.473264908298118 0.821341976362602 0.24399126 0.37966132 prediction 0.642683952725203 Functional Gain - LOC101928063 ENSG00000266921 ncRNA_exonic Human antisense chr19:44501811 chr19:44501815 . . 0 25 hm5C_associated_SNPs_100609 0 0 1 0 0 unknown 0.500231643278161 0.500231643918174 0 1.28002675126027e-09 hm5C_site_53754 DeepMRMD:0;iRNA_m5C:1.28002675126027e-09 53755 chrX 70823844 70823844 1 + T G SKCM 70823841 + 70823821 70823861 41 TCGGATGTTCCCGACGACAGCAGTGATGATTCGGAAGCTCC TCGGATGTTCCCGACGACAGCAGGGATGATTCGGAAGCTCC < 41bp 0.557182270994947 0.878472469930556 0.4227513 0.91157854 prediction 0.642580397871218 Functional Gain - GCNA ENSG00000147174 CDS Human protein_coding chrX:70823841 chrX:70823844 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_100610 0 0 0 0 0 unknown 0.500231643976884 0.500231643921064 0.82315708 0 hm5C_site_53755 DeepMRMD:0.82315708;iRNA_m5C:0 53756 chr9 140147703 140147703 1 + G T SARC 140147707 - 140147687 140147727 41 CCGGGCCAAGCAGGTTGTGCCCAGCTGGCTCTAGAGCGTGC CCGGGCCAAGCAGGTTGTGCCCAGATGGCTCTAGAGCGTGC < 41bp 0.515119458814416 0.836327829245954 0.33432603 0.42948246 prediction 0.642416740863076 Functional Gain - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140147707 chr9:140147703 nonsynonymous SNV 0.010 1 25 hm5C_associated_SNPs_100611 0 0 0 0 0 chromatin 0.500231643932036 0.500231643921016 0 0 hm5C_site_53756 DeepMRMD:0;iRNA_m5C:0 53757 chr6 97562024 97562024 1 + C A HNSC 97562020 + 97562000 97562040 41 TGCCAACTGGAGTGAGCTGGCTCCCATGCCTGTGGGAAGGA TGCCAACTGGAGTGAGCTGGCTCCAATGCCTGTGGGAAGGA < 41bp 0.412432199933671 0.821203731834641 0.097463965 0.86469644 prediction 0.642407463669282 Functional Gain - KLHL32 ENSG00000186231 CDS Human protein_coding chr6:97562020 chr6:97562024 synonymous SNV . 0 25 hm5C_associated_SNPs_100612 0 0 0 0 0 chromatin 0.500231643972747 0.500231643924162 0.72939288 0 hm5C_site_53757 DeepMRMD:0.72939288;iRNA_m5C:0 53758 chr1 32680429 32680429 1 + C A LUAD 32680425 + 32680405 32680445 41 GCCACAGGGCCCAGGTAACCCAGCCCTCTCCAAAGGAACCA GCCACAGGGCCCAGGTAACCCAGCACTCTCCAAAGGAACCA < 41bp 0.562849466351804 0.884037334576117 0.19725117 0.22665644 prediction 0.642375736448627 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32680425 chr1:32680429 nonsynonymous SNV 0.643 2 25 hm5C_associated_SNPs_100613 0 0 0 0 1 cytosol 0.500231643921092 0.500231638812301 0 0 hm5C_site_53758 DeepMRMD:0;iRNA_m5C:0 53759 chr1 248616714 248616714 1 + C A LUAD 248616710 + 248616690 248616730 41 ACCCTGATGTATGCCTGCTGCGTGCTGATGCTGCTTATCCC ACCCTGATGTATGCCTGCTGCGTGATGATGCTGCTTATCCC < 41bp 0.480943945565216 0.82118499335549 0.29089272 0.24529165 prediction 0.64236998671098 Functional Gain - OR2T2 ENSG00000196240 CDS Human protein_coding chr1:248616710 chr1:248616714 nonsynonymous SNV 0.259 1 25 hm5C_associated_SNPs_100614 0 0 0 0 0 exosome 0.50022639195664 0.500231762365271 0 1.07408172618229e-05 hm5C_site_53759 DeepMRMD:0;iRNA_m5C:1.07408172618229e-05 53760 chr9 129641824 129641824 1 + C A HNSC 129641820 + 129641800 129641840 41 ACATTCAGGGTCAGCCATTCCGAGCCCACAAAGCAGTCCTT ACATTCAGGGTCAGCCATTCCGAGACCACAAAGCAGTCCTT < 41bp 0.549665332255938 0.870839879157728 0.3696334 0.7300101 prediction 0.64234909380358 Functional Gain - ZBTB34 ENSG00000177125 CDS Human protein_coding chr9:129641820 chr9:129641824 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100615 0 0 0 0 0 nucleoplasm 0.500231643921105 0.500231643921573 0.4600202 9.36806188178707e-13 hm5C_site_53760 DeepMRMD:0.4600202;iRNA_m5C:9.36806188178707e-13 53761 chr6 348223 348223 1 + C A rs370002831 348219 + 348199 348239 41 TGGGAGATCCTGTGCCAACCCCAACGTGGGCTTCCAGAGAC TGGGAGATCCTGTGCCAACCCCAAAGTGGGCTTCCAGAGAC < 41bp 0.428947777676658 0.821171867393186 0.15807581 0.35774487 prediction 0.642343734786373 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348219 chr6:348223 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_100616 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53761 DeepMRMD:0;iRNA_m5C:0 53762 chr1 210577856 210577856 1 + C A UCEC 210577852 + 210577832 210577872 41 GAGTACTACCTGCTGCAGTTCACGCTGACCGTTCGCTGCCT GAGTACTACCTGCTGCAGTTCACGATGACCGTTCGCTGCCT < 41bp 0.450725150341275 0.821162429095863 0.69447076 0.7262052 prediction 0.642324858191725 Functional Gain - HHAT ENSG00000054392 CDS Human protein_coding chr1:210577852 chr1:210577856 nonsynonymous SNV 0.916 0 25 hm5C_associated_SNPs_100617 0 0 0 0 1 nucleolus 0.500231643920858 0.500231643914507 0.0634688800000001 0 hm5C_site_53762 DeepMRMD:0.0634688800000001;iRNA_m5C:0 Multiple complex diseases 53763 chr3 46945140 46945140 1 + C A LUAD 46945136 + 46945116 46945156 41 GCTACAGGAAGAGTGGGAGACAGTCATGTGACCAGGCGCTG GCTACAGGAAGAGTGGGAGACAGTAATGTGACCAGGCGCTG < 41bp 0.45560308663295 0.821128073911873 0.21887583 0.1230886 prediction 0.642256147823745 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46945136 chr3:46945140 synonymous SNV . 0 25 hm5C_associated_SNPs_100618 0 0 0 0 0 exosome 0.500231645585997 0.500231642915394 0 0 hm5C_site_53763 DeepMRMD:0;iRNA_m5C:0 53764 chr2 95944760 95944760 1 + C A PRAD 95944756 + 95944736 95944776 41 TGAAGAAGGCAGTGGCCCAGCAGCCGGAAGGGGTGAGGACA TGAAGAAGGCAGTGGCCCAGCAGCAGGAAGGGGTGAGGACA < 41bp 0.441545833914042 0.821125590850049 0.41712922 0.37137735 prediction 0.642251181700097 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95944756 chr2:95944760 nonsynonymous SNV 0.636 1 25 hm5C_associated_SNPs_100619 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53764 DeepMRMD:0;iRNA_m5C:0 53765 chr19 48216648 48216648 1 + C A rs555891919 48216644 + 48216624 48216664 41 GCCCCTCCCTCCTGTCCTCCCTCCCGTCCTCCCCGCTCCGG GCCCCTCCCTCCTGTCCTCCCTCCAGTCCTCCCCGCTCCGG < 41bp 0.486584227399886 0.821123898692914 0.05468172 0.9087299 prediction 0.642247797385829 Functional Gain - EHD2 ENSG00000268746 ncRNA_intronic Human lincRNA chr19:48216644 chr19:48216648 . . 0 25 hm5C_associated_SNPs_100620 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.8174598 0 hm5C_site_53765 DeepMRMD:0.8174598;iRNA_m5C:0 53766 chr18 76754062 76754062 1 + C A LUAD 76754058 + 76754038 76754078 41 ATCTGCCACCGGGTGCTGAGCTGCCAGAGCGCGCTGAAGAT ATCTGCCACCGGGTGCTGAGCTGCAAGAGCGCGCTGAAGAT < 41bp 0.426074453890175 0.821122255700591 0.3469473 0.41558266 prediction 0.642244511401183 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76754058 chr18:76754062 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_100621 0 0 0 0 0 exosome 0.500231708171283 0.500231731759228 0 4.71758883069384e-08 hm5C_site_53766 DeepMRMD:0;iRNA_m5C:4.71758883069384e-08 53767 chr3 140401413 140401413 1 + C A HNSC 140401409 + 140401389 140401429 41 CACCTCAATTGCCCCATGTGCAGCCGGCTGCGCCTGCACTC CACCTCAATTGCCCCATGTGCAGCAGGCTGCGCCTGCACTC < 41bp 0.565254564639813 0.88636659188251 0.41340962 0.44190806 prediction 0.642224054485395 Functional Gain - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140401409 chr3:140401413 synonymous SNV . 0 25 hm5C_associated_SNPs_100622 0 0 0 0 0 exosome 0.500231643921127 0.500231661999704 0 3.6157152827343e-08 hm5C_site_53767 DeepMRMD:0;iRNA_m5C:3.6157152827343e-08 53768 chr1 111828464 111828464 1 + C A rs10776722 111828460 + 111828440 111828480 41 ATCACATGCGGTGTCAGCCACAGTCGTAGCTCTGGGGGCCG ATCACATGCGGTGTCAGCCACAGTAGTAGCTCTGGGGGCCG < 41bp 0.501664008330427 0.822752210197465 0.4581434 0.8282584 prediction 0.642176403734077 Functional Gain - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111828460 chr1:111828464 . . 0 25 hm5C_associated_SNPs_100623 0 0 0 0 0 unknown 0.50023164588715 0.500126469280166 0.6565168 0 hm5C_site_53768 DeepMRMD:0.6565168;iRNA_m5C:0 53769 chr10 112837878 112837878 1 + C A COAD 112837874 + 112837854 112837894 41 CCGGGGGGCGGCGCCCGGGCCACCCCTTACTCCCTGCAGGT CCGGGGGGCGGCGCCCGGGCCACCACTTACTCCCTGCAGGT < 41bp 0.547948867831592 0.869021153533182 0.14952618 0.24410844 prediction 0.64214457140318 Functional Gain - ADRA2A ENSG00000150594 CDS Human protein_coding chr10:112837874 chr10:112837878 nonsynonymous SNV 0.992 2 25 hm5C_associated_SNPs_100624 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53769 DeepMRMD:0;iRNA_m5C:0 53770 chr16 29690454 29690454 1 + C A rs537784342 29690450 + 29690430 29690470 41 TCCCTCCACAGTCCCACCCCCAGCCTGGGGCCTCTGGGAGC TCCCTCCACAGTCCCACCCCCAGCATGGGGCCTCTGGGAGC < 41bp 0.485774726950288 0.821060799172108 0.20346221 0.22454879 prediction 0.642121598344215 Functional Gain - QPRT ENSG00000103485 UTR5 Human protein_coding chr16:29690450 chr16:29690454 . . 0 25 hm5C_associated_SNPs_100625 0 0 0 0 1 Endoplasmic reticulum 0.500230829537742 0.500231643916114 0 1.628756743699e-06 hm5C_site_53770 DeepMRMD:0;iRNA_m5C:1.628756743699e-06 53771 chr12 55945724 55945724 1 + T G COAD 55945721 + 55945701 55945741 41 CAAAGGACAAAGGCCTTTTCCACTTGTTCCTCCCACATGAT CAAAGGACAAAGGCCTTTTCCACGTGTTCCTCCCACATGAT < 41bp 0.461282298564806 0.821027883251399 0.023209512 0.14949569 prediction 0.642055766502798 Functional Gain - OR6C4 ENSG00000179626 CDS Human protein_coding chr12:55945721 chr12:55945724 synonymous SNV . 0 24 hm5C_associated_SNPs_100626 0 0 0 0 0 unknown 0.500231643926133 0.500231643904612 0 0 hm5C_site_53771 DeepMRMD:0;iRNA_m5C:0 53772 chr2 114024594 114024594 1 + T G rs7596648 114024591 + 114024571 114024611 41 TGTGGGTGGAGAAACAAGCTCGGTGTTGTGCATGCGGCTGT TGTGGGTGGAGAAACAAGCTCGGGGTTGTGCATGCGGCTGT < 41bp 0.481246639458564 0.821018865427053 0.34567332 0.89959013 prediction 0.642037730854105 Functional Gain - PAX8-AS1 ENSG00000189223 ncRNA_exonic Human processed_transcript chr2:114024591 chr2:114024594 . . 0 24 hm5C_associated_SNPs_100627 0 0 0 0 0 unknown 0.500231644097896 0.50023164392109 0.79918026 0 hm5C_site_53772 DeepMRMD:0.79918026;iRNA_m5C:0 53773 chr20 58645071 58645071 1 + C A HNSC 58645067 + 58645047 58645087 41 GCACAGCCCTTATTGGCAGGCAGACGGCTACGGGCACAGCC GCACAGCCCTTATTGGCAGGCAGAAGGCTACGGGCACAGCC < 41bp 0.535808748986999 0.856825511520899 0.53150904 0.79600614 prediction 0.6420335250678 Functional Gain - C20orf197 ENSG00000176659 CDS Human lincRNA chr20:58645067 chr20:58645071 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_100628 0 0 0 0 1 unknown 0.500231643921093 0.500231643921092 0.5289942 0 hm5C_site_53773 DeepMRMD:0.5289942;iRNA_m5C:0 53774 chr19 46262286 46262286 1 + C A rs725660 46262282 + 46262262 46262302 41 TGGAGGATGACATGGAGTACCTGACCCAAGGTGAGGCCCAG TGGAGGATGACATGGAGTACCTGAACCAAGGTGAGGCCCAG < 41bp 0.444413602796382 0.821001232027658 0.18485183 0.3278105 prediction 0.642002464055317 Functional Gain - BHMG1 ENSG00000237452 CDS Human protein_coding chr19:46262282 chr19:46262286 nonsynonymous SNV 0.150 2 25 hm5C_associated_SNPs_100629 0 1 0 0 1 cytosol 0.500231643930941 0.500231643921092 0 0 hm5C_site_53774 DeepMRMD:0;iRNA_m5C:0 53775 chr3 46307529 46307529 1 + T G OV 46307526 + 46307506 46307546 41 CAGAGGTGATCGCCTACTCCCACTGCTGCATGAACCCGGTG CAGAGGTGATCGCCTACTCCCACGGCTGCATGAACCCGGTG < 41bp 0.453940652265156 0.820957139205971 0.0887866 0.26611766 prediction 0.641914278411943 Functional Gain - CCR3 ENSG00000183625 CDS Human protein_coding chr3:46307526 chr3:46307529 nonsynonymous SNV 0.731 4 24 hm5C_associated_SNPs_100630 0 0 0 0 0 exosome 0.500231643921092 0.500231643921075 0 0 hm5C_site_53775 DeepMRMD:0;iRNA_m5C:0 53776 chr22 44585035 44585035 1 + C A UCEC 44585031 + 44585011 44585051 41 AAGCTGGAAGCAGAGGACATCGCCCTGACAGCCACAAGCCA AAGCTGGAAGCAGAGGACATCGCCATGACAGCCACAAGCCA < 41bp 0.419555403619298 0.820956004816804 0.0702728 0.3767351 prediction 0.641912009633609 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44585031 chr22:44585035 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_100631 0 0 0 0 1 exosome 0.500231643958208 0.500240534550746 0 1.77811850763376e-05 hm5C_site_53776 DeepMRMD:0;iRNA_m5C:1.77811850763376e-05 53777 chr7 72744232 72744232 1 + C A LUAD 72744228 + 72744208 72744248 41 GGCCAGGTTTCTGTTCAAACCGAACTACGCCTATGGAACGC GGCCAGGTTTCTGTTCAAACCGAAATACGCCTATGGAACGC < 41bp 0.433453204529148 0.820952707193304 0.16287044 0.21109703 prediction 0.641905414386607 Functional Gain - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72744228 chr7:72744232 nonsynonymous SNV 0.459 0 25 hm5C_associated_SNPs_100632 0 0 0 0 1 unknown 0.500231643867131 0.500231643921124 0 1.0798695271319e-10 hm5C_site_53777 DeepMRMD:0;iRNA_m5C:1.0798695271319e-10 53778 chr7 19184913 19184913 1 + G T LUAD 19184917 - 19184897 19184937 41 GTCGCAGACCTGTCCCTGGCCTCCCCGAGACGCCCTCTCCT GTCGCAGACCTGTCCCTGGCCTCCACGAGACGCCCTCTCCT < 41bp 0.439286531312291 0.820939356995463 0.13081425 0.9392369 prediction 0.641878713990926 Functional Gain - FERD3L ENSG00000146618 CDS Human protein_coding chr7:19184917 chr7:19184913 nonsynonymous SNV 0.799 4 25 hm5C_associated_SNPs_100633 0 0 0 0 0 unknown 0.500231646168068 0.500231643863589 0.8784738 0 hm5C_site_53778 DeepMRMD:0.8784738;iRNA_m5C:0 53779 chr11 59245135 59245135 1 + T G SKCM 59245132 + 59245112 59245152 41 TATCTGCTTCTCTTCCATCACAGTGCCCAAGGTTCTGGTGG TATCTGCTTCTCTTCCATCACAGGGCCCAAGGTTCTGGTGG < 41bp 0.457786944820338 0.820912325073005 0.16378537 0.908119 prediction 0.64182465014601 Functional Gain - OR4D10 ENSG00000254466 CDS Human protein_coding chr11:59245132 chr11:59245135 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_100634 0 0 0 0 0 unknown 0.500231643913755 0.500231631896945 0.816238 0 hm5C_site_53779 DeepMRMD:0.816238;iRNA_m5C:0 53780 chr7 143771460 143771460 1 + C A LUAD 143771456 + 143771436 143771476 41 GGGACAATCCTGGGGCTCATCTCACTGGACTCCAGACTCCA GGGACAATCCTGGGGCTCATCTCAATGGACTCCAGACTCCA < 41bp 0.559738213160575 0.88061989841396 0.16543469 0.936726 prediction 0.641763370506771 Functional Gain - OR2A25 ENSG00000221933 CDS Human protein_coding chr7:143771456 chr7:143771460 nonsynonymous SNV 0.298 2 25 hm5C_associated_SNPs_100635 0 0 0 0 0 unknown 0.500231643612149 0.50023164392078 0.873452 6.17262241320304e-10 hm5C_site_53780 DeepMRMD:0.873452;iRNA_m5C:6.17262241320304e-10 53781 chr1 113392814 113392814 1 + G T UCEC 113392818 - 113392798 113392838 41 ATTGGAATCCAAACACATCCCAGCCCATGCCCGGCTCCCCA ATTGGAATCCAAACACATCCCAGCACATGCCCGGCTCCCCA < 41bp 0.538064306791906 0.858892776136926 0.037329435 0.07025948 prediction 0.641656938690042 Functional Gain - LINC01356 ENSG00000215866;ENSG00000224167 ncRNA_exonic Human other chr1:113392818 chr1:113392814 . . 0 25 hm5C_associated_SNPs_100636 0 0 0 0 0 unknown 0.500231573328005 0.50023197105727 0 7.95458530378212e-07 hm5C_site_53781 DeepMRMD:0;iRNA_m5C:7.95458530378212e-07 53782 chr7 99751659 99751659 1 + C A rs185978679 99751655 + 99751635 99751675 41 CTGTGATGAGGCAGGCACACCTGTCGGTCTTGGCTTGCTGC CTGTGATGAGGCAGGCACACCTGTAGGTCTTGGCTTGCTGC < 41bp 0.472448679224302 0.82081893257042 0.17995936 0.3728723 prediction 0.64163786514084 Functional Gain - LAMTOR4 ENSG00000188186 UTR3 Human protein_coding chr7:99751655 chr7:99751659 . . 0 25 hm5C_associated_SNPs_100637 0 0 1 6 0 Cytosol 0.500231643943323 0.500231674824481 0 6.17623159282488e-08 hm5C_site_53782 DeepMRMD:0;iRNA_m5C:6.17623159282488e-08 53783 chr1 65211085 65211085 1 + C A UCEC 65211081 + 65211061 65211101 41 GGAAAATCCTGGTGAAAAACCTGCCCCAGGACAGCAACTGC GGAAAATCCTGGTGAAAAACCTGCACCAGGACAGCAACTGC < 41bp 0.563046673081451 0.883861094709955 0.3891915 0.23523322 prediction 0.641628843257007 Functional Gain - RAVER2 ENSG00000162437 CDS Human protein_coding chr1:65211081 chr1:65211085 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_100638 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643829365 0 0 hm5C_site_53783 DeepMRMD:0;iRNA_m5C:0 53784 chr11 20385323 20385323 1 + C A rs182333117 20385319 + 20385299 20385339 41 GGCGCTGTCTCCGTCGCCTCCAACCCCCCCGGTCCGACCAG GGCGCTGTCTCCGTCGCCTCCAACACCCCCGGTCCGACCAG < 41bp 0.523560571140155 0.844349853161346 0.14280406 0.06480166 prediction 0.641578564042382 Functional Gain - HTATIP2 ENSG00000109854 UTR5 Human protein_coding chr11:20385319 chr11:20385323 . . 0 25 hm5C_associated_SNPs_100639 0 0 1 0 1 Endoplasmic reticulum 0.500231646076091 0.500231643052196 0 0 hm5C_site_53784 DeepMRMD:0;iRNA_m5C:0 53785 chr12 102545573 102545573 1 + C A rs565215258 102545569 + 102545549 102545589 41 CTGAAGAAGCTGGCAGCTGTCATGCGGCAAGTGAGACAATG CTGAAGAAGCTGGCAGCTGTCATGAGGCAAGTGAGACAATG < 41bp 0.529130851456439 0.849915093540339 0.80151284 0.87136734 prediction 0.6415684841678 Functional Gain - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102545569 chr12:102545573 synonymous SNV . 0 25 hm5C_associated_SNPs_100640 0 0 1 0 1 chromatin 0.500231674074235 0.500232014369897 0.139709 6.80591323742874e-07 hm5C_site_53785 DeepMRMD:0.139709;iRNA_m5C:6.80591323742874e-07 53786 chr19 6751293 6751293 1 + T G rs1049232 6751290 + 6751270 6751310 41 GCCACGGGGAGCCCCAGGACCTATGCACTTTATTTCTGACC GCCACGGGGAGCCCCAGGACCTAGGCACTTTATTTCTGACC < 41bp 0.472423219673653 0.820770124628759 0.05189264 0.19183862 prediction 0.641540249257518 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751290 chr19:6751293 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_100641 1 0 1 8 0 Ribosome 0.500231643921092 0.500231644328928 0 8.15670420095671e-10 hm5C_site_53786 DeepMRMD:0;iRNA_m5C:8.15670420095671e-10 not specified not specified 53787 chr1 150482593 150482593 1 + C A STAD 150482589 + 150482569 150482609 41 ATCTTGCAGTGGGTCCCCCTCTCCCTCAGGAAGCTGTCCCC ATCTTGCAGTGGGTCCCCCTCTCCATCAGGAAGCTGTCCCC < 41bp 0.447663606509715 0.820726922070653 0.8549875 0.97419906 prediction 0.641453844141307 Functional Gain - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150482589 chr1:150482593 nonsynonymous SNV 0.543 3 25 hm5C_associated_SNPs_100642 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643901461 0.23842312 0 hm5C_site_53787 DeepMRMD:0.23842312;iRNA_m5C:0 53788 chr15 77328231 77328231 1 + C A STAD 77328227 + 77328207 77328247 41 GCAGGAGATACAGGGAAACCCGGCCTCACCAGCCCAGGAGT GCAGGAGATACAGGGAAACCCGGCATCACCAGCCCAGGAGT < 41bp 0.569653008961845 0.89028697627288 0.8620592 0.7848079 prediction 0.64126793462207 Functional Gain - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77328227 chr15:77328231 synonymous SNV . 0 25 hm5C_associated_SNPs_100643 0 0 0 0 1 exosome 0.500231649142769 0.500231643921092 0 0 hm5C_site_53788 DeepMRMD:0;iRNA_m5C:0 53789 chr19 55295171 55295171 1 + C A UCEC 55295167 + 55295147 55295187 41 TCACACAGAGAAAAATCACTCGCCCTTCTCAGAGGCCCAAG TCACACAGAGAAAAATCACTCGCCATTCTCAGAGGCCCAAG < 41bp 0.448947295374273 0.820631202907647 0.09690505 0.81938493 prediction 0.641262405815294 Functional Gain - KIR2DL1 ENSG00000125498;ENSG00000243772 CDS Human other chr19:55295167 chr19:55295171 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_100644 0 0 0 0 1 exosome 0.500231642552237 0.500231391252652 0.63876986 0 hm5C_site_53789 DeepMRMD:0.63876986;iRNA_m5C:0 53790 chr12 55420899 55420899 1 + C A LUSC 55420895 + 55420875 55420915 41 GAAACACATCTCCTTCATCTCAAGCCCCAAGTATTCAAGAG GAAACACATCTCCTTCATCTCAAGACCCAAGTATTCAAGAG < 41bp 0.449233995220706 0.820622004648772 0.19041887 0.49562356 prediction 0.641244009297544 Functional Gain - NEUROD4 ENSG00000123307 CDS Human protein_coding chr12:55420895 chr12:55420899 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_100645 0 0 0 0 0 Cytosol 0.500231643910373 0.500231643911459 0 2.17048601314218e-12 hm5C_site_53790 DeepMRMD:0;iRNA_m5C:2.17048601314218e-12 53791 chr18 43219773 43219773 1 + C A rs142923442 43219769 + 43219749 43219789 41 TGGCTGTGACAATCCCTGGACAGGCGGCGTGTTCCTGGTGG TGGCTGTGACAATCCCTGGACAGGAGGCGTGTTCCTGGTGG < 41bp 0.45949975753051 0.820610934307209 0.47789314 0.75918543 prediction 0.641221868614418 Functional Gain - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43219769 chr18:43219773 synonymous SNV . 0 25 hm5C_associated_SNPs_100646 0 0 0 0 2 Nucleus 0.500231630985565 0.500231643705443 0.51837086 2.54397556354036e-08 hm5C_site_53791 DeepMRMD:0.51837086;iRNA_m5C:2.54397556354036e-08 53792 chr2 10187893 10187893 1 + C A rs113903638 10187889 + 10187869 10187909 41 CACGGATGTTCTCCAGTCCTCTGCCGTAGTGGCCAGAGCTC CACGGATGTTCTCCAGTCCTCTGCAGTAGTGGCCAGAGCTC < 41bp 0.566499031708857 0.88709721176749 0.00996384 0.039346844 prediction 0.641196360117267 Functional Gain - KLF11 ENSG00000172059 CDS Human protein_coding chr2:10187889 chr2:10187893 synonymous SNV . 0 25 hm5C_associated_SNPs_100647 0 0 1 0 0 nucleoplasm 0.500231645197823 0.500231430374209 0 0 hm5C_site_53792 DeepMRMD:0;iRNA_m5C:0 53793 chr7 7273969 7273969 1 + C A BLCA 7273965 + 7273945 7273985 41 CGGGAAATGGCCTCTAAATCCTGGCTGAATTTTTTAACCTT CGGGAAATGGCCTCTAAATCCTGGATGAATTTTTTAACCTT < 41bp 0.549174591410992 0.869771450408234 0.7664043 0.7026563 prediction 0.641193717994484 Functional Gain - C1GALT1 ENSG00000106392 CDS Human protein_coding chr7:7273965 chr7:7273969 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_100648 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231642104888 0 0 hm5C_site_53793 DeepMRMD:0;iRNA_m5C:0 53794 chr19 15132729 15132729 1 + C A LUAD 15132725 + 15132705 15132745 41 CTCCCGGAGGCTGCGCGCCTCGCACAGGTAAACCCCCTCCC CTCCCGGAGGCTGCGCGCCTCGCAAAGGTAAACCCCCTCCC < 41bp 0.561153476287436 0.881749823280147 0.054226846 0.18558219 prediction 0.641192693985422 Functional Gain - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15132725 chr19:15132729 nonsynonymous SNV 0.260 0 25 hm5C_associated_SNPs_100649 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_53794 DeepMRMD:0;iRNA_m5C:0 53795 chr5 145439516 145439516 1 + C A UCEC 145439512 + 145439492 145439532 41 GCAGCCCCACCATGGTCCTTCGGCCTCAGCAGTTCCAATTC GCAGCCCCACCATGGTCCTTCGGCATCAGCAGTTCCAATTC < 41bp 0.565555259940122 0.886151101995655 0.17829365 0.1160841 prediction 0.641191684111067 Functional Gain - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145439512 chr5:145439516 nonsynonymous SNV 0.977 1 25 hm5C_associated_SNPs_100650 0 0 0 0 1 exosome 0.500231643921092 0.500231643921106 0 2.77555756156289e-14 hm5C_site_53795 DeepMRMD:0;iRNA_m5C:2.77555756156289e-14 53796 chr9 125487120 125487120 1 + C A LUSC 125487116 + 125487096 125487136 41 AGTTATGTACACAGTAGTGACACCCATGCTGAACCCTTTCA AGTTATGTACACAGTAGTGACACCAATGCTGAACCCTTTCA < 41bp 0.442943142850624 0.82059178922127 0.02898091 0.14145967 prediction 0.641183578442539 Functional Gain - OR1L4 ENSG00000136939 CDS Human protein_coding chr9:125487116 chr9:125487120 synonymous SNV . 0 25 hm5C_associated_SNPs_100651 0 0 0 0 0 unknown 0.500231644024597 0.500231643514769 0 0 hm5C_site_53796 DeepMRMD:0;iRNA_m5C:0 53797 chr5 176823992 176823992 1 + C A LUAD 176823988 + 176823968 176824008 41 ATTGAGAGGGCCTACCCGCTCACACTGGGTTCCAACATCGG ATTGAGAGGGCCTACCCGCTCACAATGGGTTCCAACATCGG < 41bp 0.433226110635412 0.820585903230175 0.071222395 0.1657117 prediction 0.64117180646035 Functional Gain - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176823988 chr5:176823992 nonsynonymous SNV 0.978 5 25 hm5C_associated_SNPs_100652 0 0 0 0 2 exosome 0.500231643921092 0.500231643921088 0 0 hm5C_site_53797 DeepMRMD:0;iRNA_m5C:0 53798 chr9 139840170 139840170 1 + C A UCEC 139840166 + 139840146 139840186 41 GGCCACCGGGCCGAGGCCACCACACTGCATGTGGCTCCCCA GGCCACCGGGCCGAGGCCACCACAATGCATGTGGCTCCCCA < 41bp 0.564611244405476 0.88518732796969 0.1868034 0.3152497 prediction 0.641152167128429 Functional Gain - C8G ENSG00000176919 CDS Human protein_coding chr9:139840166 chr9:139840170 nonsynonymous SNV 0.052 0 25 hm5C_associated_SNPs_100653 0 0 1 0 2 exosome 0.500231649914191 0.50023164496364 0 0 hm5C_site_53798 DeepMRMD:0;iRNA_m5C:0 53799 chrX 75649334 75649334 1 + T G rs147602571 75649331 + 75649311 75649351 41 ACCTCCGTGCCGCCCACCGCCACTGAGGAGTTGAGCACCTC ACCTCCGTGCCGCCCACCGCCACGGAGGAGTTGAGCACCTC < 41bp 0.550060634628559 0.870635492325798 0.22336021 0.6270035 prediction 0.641149715394478 Functional Gain - MAGEE1 ENSG00000198934 CDS Human protein_coding chrX:75649331 chrX:75649334 synonymous SNV . 0 24 hm5C_associated_SNPs_100654 0 0 0 0 0 membrane 0.500231643916402 0.500231645906785 0.254007 3.98076749341669e-09 hm5C_site_53799 DeepMRMD:0.254007;iRNA_m5C:3.98076749341669e-09 53800 chr22 45691481 45691481 1 + C A LUSC 45691477 + 45691457 45691497 41 GATGGGGAAACGACTCACGACTCCCAAATCACTCAGGAGGC GATGGGGAAACGACTCACGACTCCAAAATCACTCAGGAGGC < 41bp 0.411965159289788 0.820574347525452 0.42918432 0.96384645 prediction 0.641148695050904 Functional Gain - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45691477 chr22:45691481 nonsynonymous SNV 0.987 3 25 hm5C_associated_SNPs_100655 0 0 0 0 1 exosome 0.500231621253709 0.500231642569977 0.9276929 4.26325361679858e-08 hm5C_site_53800 DeepMRMD:0.9276929;iRNA_m5C:4.26325361679858e-08 53801 chr6 10414852 10414852 1 + C A rs114299457 10414848 + 10414828 10414868 41 AAGATAACACGAGGAGTGCACAGGCAAGTGCCCAGTTGCCA AAGATAACACGAGGAGTGCACAGGAAAGTGCCCAGTTGCCA < 41bp 0.498154926659972 0.820568447205888 0.27492306 0.36143297 prediction 0.641136894411777 Functional Gain - TFAP2A-AS1 ENSG00000229950 ncRNA_exonic Human antisense chr6:10414848 chr6:10414852 . . 0 25 hm5C_associated_SNPs_100656 0 0 0 0 0 unknown 0.50023164393425 0.500231643921091 0 0 hm5C_site_53801 DeepMRMD:0;iRNA_m5C:0 53802 chr13 43363583 43363583 1 + C A rs182494370 43363579 + 43363559 43363599 41 ATTCATGCACACATCTTTCCCTGGCAGCTGAAGAAACACTC ATTCATGCACACATCTTTCCCTGGAAGCTGAAGAAACACTC < 41bp 0.516360427681077 0.836925641136292 0.029943258 0.08043733 prediction 0.641130426910429 Functional Gain - FAM216B ENSG00000179813 UTR3 Human protein_coding chr13:43363579 chr13:43363583 . . 0 25 hm5C_associated_SNPs_100657 0 0 0 1 0 Cytosol 0.500231656541358 0.500231742122001 0 1.7116128558925e-07 hm5C_site_53802 DeepMRMD:0;iRNA_m5C:1.7116128558925e-07 53803 chr17 10608594 10608594 1 + T G KIRP 10608591 + 10608571 10608611 41 AACCATGAATTCTATAACTTCAGTAGAGAGTATTTAACACA AACCATGAATTCTATAACTTCAGGAGAGAGTATTTAACACA < 41bp 0.504207519324669 0.824769324126962 0.062200874 0.37928146 prediction 0.641123609604586 Functional Gain - ADPRM ENSG00000170222 CDS Human protein_coding chr17:10608591 chr17:10608594 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_100658 0 0 0 4 0 Cytosol 0.500231557255463 0.500231643921092 0 1.73331259567533e-07 hm5C_site_53803 DeepMRMD:0;iRNA_m5C:1.73331259567533e-07 53804 chr15 23811411 23811411 1 + C A HNSC 23811407 + 23811387 23811427 41 CTCAGGAAGTGGCGGAAGCCCCCCCGGCTGCATCCTCCCTT CTCAGGAAGTGGCGGAAGCCCCCCAGGCTGCATCCTCCCTT < 41bp 0.442314247313358 0.820507175619919 0.08468449 0.09134793 prediction 0.641014351239837 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811407 chr15:23811411 nonsynonymous SNV 0.509 0 25 hm5C_associated_SNPs_100659 0 0 0 0 0 chromatin 0.50023164603683 0.500231643921134 0 0 hm5C_site_53804 DeepMRMD:0;iRNA_m5C:0 53805 chr1 33959067 33959067 1 + C A GBM 33959063 + 33959043 33959083 41 GCTGATGAGGGCTCGGGCTGCAGTCAGGGCCATGGGGACTG GCTGATGAGGGCTCGGGCTGCAGTAAGGGCCATGGGGACTG < 41bp 0.432536924667201 0.820504912410044 0.10052717 0.42654043 prediction 0.641009824820087 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33959063 chr1:33959067 synonymous SNV . 0 25 hm5C_associated_SNPs_100660 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0 8.88178419700125e-16 hm5C_site_53805 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 53806 chr7 100275229 100275229 1 + C A OV 100275225 + 100275205 100275245 41 GACAACATCTGCTCCATCTACAGCCTCAAGACCCGCGAGGG GACAACATCTGCTCCATCTACAGCATCAAGACCCGCGAGGG < 41bp 0.442830547744323 0.820499898040536 0.15632677 0.07014042 prediction 0.640999796081072 Functional Gain - GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275225 chr7:100275229 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_100661 0 0 1 0 1 Cytosol 0.500231643921092 0.500231619720971 0 0 hm5C_site_53806 DeepMRMD:0;iRNA_m5C:0 53807 chr1 12202724 12202724 1 + C A rs189861783 12202720 + 12202700 12202740 41 TCCAGCATCTAGTGGTGGACCGGCCGGTCACTGCAGGGGTC TCCAGCATCTAGTGGTGGACCGGCAGGTCACTGCAGGGGTC < 41bp 0.543995165001138 0.864471826124123 0.3370756 0.41398996 prediction 0.64095332224597 Functional Gain - TNFRSF8 ENSG00000120949 UTR3 Human protein_coding chr1:12202720 chr1:12202724 . . 0 25 hm5C_associated_SNPs_100662 0 0 1 0 0 Endoplasmic reticulum 0.500216996766957 0.500231643921275 0 2.9294308635297e-05 hm5C_site_53807 DeepMRMD:0;iRNA_m5C:2.9294308635297e-05 53808 chrX 70522155 70522155 1 + T G rs768682304 70522152 + 70522132 70522172 41 GTCCTGCTGCCGAAAGCGAACTGTAGATTTCTCTGAGTTCT GTCCTGCTGCCGAAAGCGAACTGGAGATTTCTCTGAGTTCT < 41bp 0.46814990776988 0.820464210754112 0.37519026 0.8889288 prediction 0.640928421508224 Functional Gain - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70522152 chrX:70522155 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_100663 0 0 1 0 1 exosome 0.500231643378321 0.500231643925434 0.7778576 1.09422759742017e-09 hm5C_site_53808 DeepMRMD:0.7778576;iRNA_m5C:1.09422759742017e-09 53809 chr1 156702105 156702105 1 + C A OV 156702101 + 156702081 156702121 41 CAGTGTGGCCACTCACCCTGCTGGCCCTGAAGTCCACGGCG CAGTGTGGCCACTCACCCTGCTGGACCTGAAGTCCACGGCG < 41bp 0.566021846596316 0.886478205595503 0.25494748 0.3668769 prediction 0.640912717998373 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702101 chr1:156702105 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_100664 0 0 0 0 1 chromatin 0.50023161466703 0.500231696920989 0 1.64507917066459e-07 hm5C_site_53809 DeepMRMD:0;iRNA_m5C:1.64507917066459e-07 53810 chr6 31545256 31545256 1 + C A LUAD 31545252 + 31545232 31545272 41 GACTCAGCGCTGAGATCAATCGGCCCGACTATCTCGACTTT GACTCAGCGCTGAGATCAATCGGCACGACTATCTCGACTTT < 41bp 0.502394677711259 0.822837061800229 0.88579726 0.86677736 prediction 0.640884768177941 Functional Gain - TNF ENSG00000232810 CDS Human protein_coding chr6:31545252 chr6:31545256 nonsynonymous SNV 0.005 4 25 hm5C_associated_SNPs_100665 0 0 0 0 0 Ribosome 0.500266687953326 0.500249254745835 0 0 hm5C_site_53810 DeepMRMD:0;iRNA_m5C:0 53811 chr7 31732113 31732113 1 + C A LUAD 31732109 + 31732089 31732129 41 CTCTCAGAAGACAGACTGGACAAGCTAGACCCTCGTTGCAG CTCTCAGAAGACAGACTGGACAAGATAGACCCTCGTTGCAG < 41bp 0.557192685506654 0.877607550567635 0.28037968 0.37735772 prediction 0.640829730121963 Functional Gain - PPP1R17 ENSG00000106341 CDS Human protein_coding chr7:31732109 chr7:31732113 nonsynonymous SNV 0.579 1 25 hm5C_associated_SNPs_100666 0 0 0 0 2 exosome 0.500231564416787 0.500231306614462 0 0 hm5C_site_53811 DeepMRMD:0;iRNA_m5C:0 53812 chr15 40751142 40751142 1 + C A KIRP 40751138 + 40751118 40751158 41 ACCGCAGCCGTGACCGTGATCGTGCTACTGGGGGCTGGTCC ACCGCAGCCGTGACCGTGATCGTGATACTGGGGGCTGGTCC < 41bp 0.555247830455906 0.875660217027219 0.73410773 0.9285654 prediction 0.640824773142626 Functional Gain - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40751138 chr15:40751142 nonsynonymous SNV 0.018 1 25 hm5C_associated_SNPs_100667 0 0 1 0 0 chromatin 0.50023164318574 0.500231643876217 0.38891534 1.38095268553684e-09 hm5C_site_53812 DeepMRMD:0.38891534;iRNA_m5C:1.38095268553684e-09 53813 chr3 53899276 53899276 1 + C A rs1043261 53899272 + 53899252 53899292 41 TGTGCAGAACTTCTCCATGTCAAGCAGCAGGTGTCAGCAGG TGTGCAGAACTTCTCCATGTCAAGAAGCAGGTGTCAGCAGG < 41bp 0.5485291017002 0.86894004852212 0.1436441 0.32295346 prediction 0.640821893643839 Functional Gain - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53899272 chr3:53899276 nonsynonymous SNV 0.122 1 25 hm5C_associated_SNPs_100668 0 0 1 0 0 Nucleus 0.500231643921142 0.500231439165484 0 0 hm5C_site_53813 DeepMRMD:0;iRNA_m5C:0 53814 chr2 215279176 215279176 1 + C A rs191363741 215279172 + 215279152 215279192 41 GCTCTAGATGGACCTGTTTGCGACCAACCAGAATGCCCTAA GCTCTAGATGGACCTGTTTGCGACAAACCAGAATGCCCTAA < 41bp 0.565768036101933 0.886176954164551 0.110039234 0.26365978 prediction 0.640817836125234 Functional Gain - VWC2L ENSG00000174453 CDS Human protein_coding chr2:215279172 chr2:215279176 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_100669 0 0 0 0 0 cytosol 0.500231643921092 0.500231643920515 0 0 hm5C_site_53814 DeepMRMD:0;iRNA_m5C:0 53815 chr18 13826463 13826463 1 + C A LUAD 13826459 + 13826439 13826479 41 CAGCTCTGCGCGGCAGAGGACCAGCATGCAGGGCGCGGTCA CAGCTCTGCGCGGCAGAGGACCAGAATGCAGGGCGCGGTCA < 41bp 0.463633742529896 0.820394760867177 0.86868024 0.8476953 prediction 0.640789521734354 Functional Gain - MC5R ENSG00000176136 CDS Human protein_coding chr18:13826459 chr18:13826463 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_100670 0 0 0 0 0 unknown 0.500231633156879 0.500231671053762 0 7.57937657080987e-08 hm5C_site_53815 DeepMRMD:0;iRNA_m5C:7.57937657080987e-08 53816 chr11 27016314 27016314 1 + C A LUSC 27016310 + 27016290 27016330 41 GGCAGCCTGCTGAGCCTCACCCTGCGGGAGGAGTTCACCGT GGCAGCCTGCTGAGCCTCACCCTGAGGGAGGAGTTCACCGT < 41bp 0.46592109079998 0.820394094145474 0.13337576 0.10373488 prediction 0.640788188290947 Functional Gain - FIBIN ENSG00000176971 CDS Human protein_coding chr11:27016310 chr11:27016314 synonymous SNV . 0 25 hm5C_associated_SNPs_100671 0 0 0 0 0 exosome 0.500231643921099 0.500231643921092 0 0 hm5C_site_53816 DeepMRMD:0;iRNA_m5C:0 53817 chr14 35409466 35409466 1 + C A UCEC 35409462 + 35409442 35409482 41 GGAAGAGGATGATGAACAAACACTCTACAGAGTTCGGGAGT GGAAGAGGATGATGAACAAACACTATACAGAGTTCGGGAGT < 41bp 0.471297800265036 0.820389726663129 0.17163974 0.22921556 prediction 0.640779453326258 Functional Gain - IGBP1P1 ENSG00000226677 ncRNA_exonic Human processed_pseudogene chr14:35409462 chr14:35409466 . . 0 25 hm5C_associated_SNPs_100672 0 0 0 0 0 unknown 0.500231728197788 0.500231643921093 0 0 hm5C_site_53817 DeepMRMD:0;iRNA_m5C:0 53818 chr10 75529125 75529125 1 + C A PAAD 75529121 + 75529101 75529141 41 CTAGTGTGCCCTGCTTTACACCAGCTGTGCAGGGCAGCGTC CTAGTGTGCCCTGCTTTACACCAGATGTGCAGGGCAGCGTC < 41bp 0.440437229153271 0.820382602905346 0.18503407 0.32086787 prediction 0.640765205810691 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75529121 chr10:75529125 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100673 0 0 1 2 1 Nucleus 0.500237472111752 0.500231679806283 0 0 hm5C_site_53818 DeepMRMD:0;iRNA_m5C:0 53819 chr8 99440859 99440859 1 + C A LUAD 99440855 + 99440835 99440875 41 CCCGATTTCCAAATCCCTGACAGCCAGGGCAACCCTGGCGA CCCGATTTCCAAATCCCTGACAGCAAGGGCAACCCTGGCGA < 41bp 0.422772543510949 0.820376343519428 0.062916756 0.2062535 prediction 0.640752687038856 Functional Gain - KCNS2 ENSG00000156486 CDS Human protein_coding chr8:99440855 chr8:99440859 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_100674 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 4.44089209850063e-16 hm5C_site_53819 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 53820 chr5 121187895 121187895 1 + C A UCEC 121187891 + 121187871 121187911 41 CTTCCACCCCGACTCCGAGGCTGCCATCAACCGCCAGATCA CTTCCACCCCGACTCCGAGGCTGCAATCAACCGCCAGATCA < 41bp 0.56019016546956 0.88056178862579 0.1752528 0.12857252 prediction 0.640743246312462 Functional Gain - FTMT ENSG00000181867 CDS Human protein_coding chr5:121187891 chr5:121187895 synonymous SNV . 0 25 hm5C_associated_SNPs_100675 0 0 0 0 0 unknown 0.500231639916046 0.500231611440234 0 0 hm5C_site_53820 DeepMRMD:0;iRNA_m5C:0 53821 chr11 113140939 113140939 1 + A C SKCM 113140942 - 113140922 113140962 41 GAGGATGCCCACGATGGCCCCGGTGCTCAGGCCTGAGGTGG GAGGATGCCCACGATGGCCCCGGGGCTCAGGCCTGAGGTGG < 41bp 0.551995261907133 0.872361437037123 0.7206201 0.9002243 prediction 0.64073235025998 Functional Gain - NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113140942 chr11:113140939 nonsynonymous SNV 0.994 0 24 hm5C_associated_SNPs_100676 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.3592084 0 hm5C_site_53821 DeepMRMD:0.3592084;iRNA_m5C:0 53822 chr1 34330075 34330075 1 + C A rs200543241 34330071 + 34330051 34330091 41 AAGCGGGATCCCCAGGAACCCAGACGGCCTCCATCATCCTT AAGCGGGATCCCCAGGAACCCAGAAGGCCTCCATCATCCTT < 41bp 0.557958219106693 0.878319360257318 0.13855591 0.115537524 prediction 0.640722282301251 Functional Gain - HMGB4 ENSG00000176256 CDS Human protein_coding chr1:34330071 chr1:34330075 synonymous SNV . 0 25 hm5C_associated_SNPs_100677 0 0 0 0 0 unknown 0.500231643916467 0.50023164392119 0 9.44599953811576e-12 hm5C_site_53822 DeepMRMD:0;iRNA_m5C:9.44599953811576e-12 53823 chr17 34091520 34091520 1 + C A UCEC 34091516 + 34091496 34091536 41 GCCGCGCCGCGGGGGCTGTGCTTGCTGCGAGCTCCTCTTCT GCCGCGCCGCGGGGGCTGTGCTTGATGCGAGCTCCTCTTCT < 41bp 0.542628025447186 0.862982621985549 0.37179208 0.5838712 prediction 0.640709193076726 Functional Gain - C17orf50 ENSG00000154768 CDS Human other chr17:34091516 chr17:34091520 stopgain 0.827 0 25 hm5C_associated_SNPs_100678 0 0 0 0 1 exosome 0.500231643921093 0.500231641277147 0.1677424 0 hm5C_site_53823 DeepMRMD:0.1677424;iRNA_m5C:0 53824 chr1 165621271 165621271 1 + C A SKCM 165621267 + 165621247 165621287 41 TAGCTGTTGGAGGTGTTTACCACCCGGTAAGTTTTCCAGGA TAGCTGTTGGAGGTGTTTACCACCAGGTAAGTTTTCCAGGA < 41bp 0.569031639569719 0.889379094901499 0.42029154 0.733217 prediction 0.640694910663561 Functional Gain - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165621267 chr1:165621271 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100679 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.466434 0 hm5C_site_53824 DeepMRMD:0.466434;iRNA_m5C:0 53825 chr1 152659420 152659420 1 + C A COAD 152659416 + 152659396 152659436 41 CTAAGTGTCCCCCTAAATGCCTGCCCCAGTGCCCAGCTCCA CTAAGTGTCCCCCTAAATGCCTGCACCAGTGCCCAGCTCCA < 41bp 0.440616340595765 0.820330432621308 0.066593915 0.07781646 prediction 0.640660865242615 Functional Gain - LCE2B ENSG00000159455 CDS Human protein_coding chr1:152659416 chr1:152659420 nonsynonymous SNV 0.015 2 25 hm5C_associated_SNPs_100680 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_53825 DeepMRMD:0;iRNA_m5C:0 53826 chrX 55479371 55479371 1 + T G CHOL 55479368 + 55479348 55479388 41 GCAAGGGTTCGTAACCGATGCTCTAAAGACTGGCCTTGTAA GCAAGGGTTCGTAACCGATGCTCGAAAGACTGGCCTTGTAA < 41bp 0.528806756020755 0.849094160349263 0.8815682 0.15023372 prediction 0.640574808657016 Functional Gain - MAGEH1 ENSG00000187601 CDS Human protein_coding chrX:55479368 chrX:55479371 synonymous SNV . 0 24 hm5C_associated_SNPs_100681 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53826 DeepMRMD:0;iRNA_m5C:0 53827 chr3 38045751 38045751 1 + C A COAD 38045747 + 38045727 38045767 41 TGCTGTCCGTGCTGGCCAGGCTCCCTGAGGAGGTCCCCAGC TGCTGTCCGTGCTGGCCAGGCTCCATGAGGAGGTCCCCAGC < 41bp 0.415684249823211 0.820259969549551 0.16606277 0.91548693 prediction 0.640519939099101 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38045747 chr3:38045751 nonsynonymous SNV 0.698 1 25 hm5C_associated_SNPs_100682 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0.83097386 0 hm5C_site_53827 DeepMRMD:0.83097386;iRNA_m5C:0 53828 chr15 83499472 83499472 1 + C A rs139061517 83499468 + 83499448 83499488 41 CCCACGCGGTGTCAGTAATTCACCCGTCCTCTAGGAAAACT CCCACGCGGTGTCAGTAATTCACCAGTCCTCTAGGAAAACT < 41bp 0.419199675234524 0.820240913217731 0.08613998 0.16930512 prediction 0.640481826435463 Functional Gain - WHAMM ENSG00000156232 CDS Human protein_coding chr15:83499468 chr15:83499472 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_100683 0 0 1 0 0 Nucleus 0.500231643924879 0.500231643908931 0 0 hm5C_site_53828 DeepMRMD:0;iRNA_m5C:0 53829 chr16 72139184 72139184 1 + C A rs2074626 72139180 + 72139160 72139200 41 GGAGGAACTGGAGAACGCGCCTGCCCTGGCTGTGCTGCCCA GGAGGAACTGGAGAACGCGCCTGCACTGGCTGTGCTGCCCA < 41bp 0.410110010855725 0.820226952186654 0.15373597 0.2668984 prediction 0.640453904373308 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139180 chr16:72139184 synonymous SNV . 0 25 hm5C_associated_SNPs_100684 0 0 1 0 2 Cytosol 0.500231643921092 0.500231678429243 0 6.90163022287749e-08 hm5C_site_53829 DeepMRMD:0;iRNA_m5C:6.90163022287749e-08 53830 chr11 63987784 63987784 1 + C A UCEC 63987780 + 63987760 63987800 41 CCTGAGGGCATGAGTGAGATCTACCTGCGGTGCCAGGATGT CCTGAGGGCATGAGTGAGATCTACATGCGGTGCCAGGATGT < 41bp 0.422344661021345 0.820212960222988 0.07233253 0.6893527 prediction 0.640425920445977 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987780 chr11:63987784 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_100685 0 0 1 0 2 Cytosol 0.500231643968503 0.500231630693001 0.3787054 0 hm5C_site_53830 DeepMRMD:0.3787054;iRNA_m5C:0 53831 chr1 209785563 209785563 1 + T G COAD 209785560 + 209785540 209785580 41 TCAAAAAGGCCAACAAAAAACAGTACGTATTTTTAGCCAAA TCAAAAAGGCCAACAAAAAACAGGACGTATTTTTAGCCAAA < 41bp 0.536221396847796 0.856431043950567 0.13085535 0.4221877 prediction 0.640419294205542 Functional Gain - CAMK1G ENSG00000008118 splicing Human protein_coding chr1:209785560 chr1:209785563 . 0.939 0 24 hm5C_associated_SNPs_100686 0 0 0 0 0 exosome 0.500231689982125 0.500231475721758 0 0 hm5C_site_53831 DeepMRMD:0;iRNA_m5C:0 53832 chr11 57563067 57563067 1 + T G KIRC 57563064 + 57563044 57563084 41 TATAGGATCACAGTCACCTTCTATATAGCACCATCCCCAGG TATAGGATCACAGTCACCTTCTAGATAGCACCATCCCCAGG < 41bp 0.485590179234101 0.820196862197315 0.15383527 0.1766848 prediction 0.64039372439463 Functional Gain - CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57563064 chr11:57563067 nonsynonymous SNV 0.994 1 24 hm5C_associated_SNPs_100687 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_53832 DeepMRMD:0;iRNA_m5C:0 53833 chr7 134925332 134925332 1 + C A LUSC 134925328 + 134925308 134925348 41 ATGACAGAGCAACACCCCAGCTGCCAGCACAGCTGCAGGAG ATGACAGAGCAACACCCCAGCTGCAAGCACAGCTGCAGGAG < 41bp 0.42057418145158 0.820175096656306 0.13544804 0.13841385 prediction 0.640350193312611 Functional Gain - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134925328 chr7:134925332 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100688 0 0 0 0 1 exosome 0.500231643921092 0.500231644076484 0 3.10783176971086e-10 hm5C_site_53833 DeepMRMD:0;iRNA_m5C:3.10783176971086e-10 53834 chr1 20518628 20518628 1 + T G rs41307804 20518625 + 20518605 20518645 41 TACAACTTCTGGGAGCTACTCTGTGGGCTGAATTCTTCCAA TACAACTTCTGGGAGCTACTCTGGGGGCTGAATTCTTCCAA < 41bp 0.500234978079089 0.820400347845291 0.2140722 0.91118425 prediction 0.640330739532404 Functional Gain - UBXN10 ENSG00000162543 UTR3 Human protein_coding chr1:20518625 chr1:20518628 . . 0 24 hm5C_associated_SNPs_100689 0 0 0 0 0 Cytosol 0.500231643921094 0.500231643918934 0.8223685 0 hm5C_site_53834 DeepMRMD:0.8223685;iRNA_m5C:0 53835 chr16 57762347 57762347 1 + C A UCEC 57762343 + 57762323 57762363 41 CACCTGCGGCAGGTGGAGACCCAGCTGGACTACCTGGCCCC CACCTGCGGCAGGTGGAGACCCAGATGGACTACCTGGCCCC < 41bp 0.438896086700255 0.82014538807683 0.78093344 0.91611785 prediction 0.640290776153661 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57762343 chr16:57762347 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_100690 0 0 0 0 1 cytosol 0.500231643966661 0.500231643921102 0.27036882 0 hm5C_site_53835 DeepMRMD:0.27036882;iRNA_m5C:0 53836 chr20 23016732 23016732 1 + C A HNSC 23016728 + 23016708 23016748 41 GGCCTGCAACCTGCAGTGGCCACACCCGGCCTGGTCGGCAG GGCCTGCAACCTGCAGTGGCCACAACCGGCCTGGTCGGCAG < 41bp 0.461896137120605 0.820121647004401 0.65325874 0.41182864 prediction 0.640243294008803 Functional Gain - SSTR4 ENSG00000132671 CDS Human protein_coding chr20:23016728 chr20:23016732 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_100691 0 0 0 0 0 exosome 0.500231643921111 0.500231643921093 0 0 hm5C_site_53836 DeepMRMD:0;iRNA_m5C:0 53837 chr4 947071 947071 1 + C A PAAD 947067 + 947047 947087 41 AGGGCTCTGTACCGACGACACGTCCTGGGCATCGTCCTCCA AGGGCTCTGTACCGACGACACGTCATGGGCATCGTCCTCCA < 41bp 0.432336271454422 0.820114349393497 0.03530273 0.084021926 prediction 0.640228698786995 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:947067 chr4:947071 nonsynonymous SNV 0.023 3 25 hm5C_associated_SNPs_100692 0 0 0 0 2 chromatin 0.500231643923524 0.500229026788302 0 0 hm5C_site_53837 DeepMRMD:0;iRNA_m5C:0 53838 chr7 34192862 34192862 1 + C A PRAD 34192858 + 34192838 34192878 41 CTTCACAAGGGAAGGTGCATCAAGCCAGTCCTTTGTCCCCA CTTCACAAGGGAAGGTGCATCAAGACAGTCCTTTGTCCCCA < 41bp 0.462412204461882 0.8200739851548 0.25550342 0.42451623 prediction 0.6401479703096 Functional Gain - BMPER ENSG00000164619 CDS Human protein_coding chr7:34192858 chr7:34192862 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_100693 0 0 0 0 0 exosome 0.500231643921092 0.500231643921062 0 0 hm5C_site_53838 DeepMRMD:0;iRNA_m5C:0 53839 chr3 195452976 195452976 1 + C A COAD 195452972 + 195452952 195452992 41 ATGCCACGGTTGGGACCCCACTCCCCACTAACAGCGCCACA ATGCCACGGTTGGGACCCCACTCCACACTAACAGCGCCACA < 41bp 0.411981977682191 0.820070023727741 0.22413176 0.91993666 prediction 0.640140047455481 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195452972 chr3:195452976 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_100694 0 0 0 1 0 Nucleus 0.500231647046791 0.500231658474903 0.83987332 2.28562251347597e-08 hm5C_site_53839 DeepMRMD:0.83987332;iRNA_m5C:2.28562251347597e-08 53840 chr7 150417426 150417426 1 + C A STAD 150417422 + 150417402 150417442 41 TGCTACCTGCTCTCGGCCCCCGGACCCCACGCGCTGCTCCT TGCTACCTGCTCTCGGCCCCCGGAACCCACGCGCTGCTCCT < 41bp 0.441637504174998 0.820050841478342 0.3302934 0.73710203 prediction 0.640101682956684 Functional Gain - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417422 chr7:150417426 nonsynonymous SNV 0.174 2 25 hm5C_associated_SNPs_100695 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.47420406 0 hm5C_site_53840 DeepMRMD:0.47420406;iRNA_m5C:0 53841 chr20 31890827 31890827 1 + C A UCEC 31890823 + 31890803 31890843 41 GCCAAGGTGGCCCAACTGATCGTGCTGGAAGTGTTTCCCTC GCCAAGGTGGCCCAACTGATCGTGATGGAAGTGTTTCCCTC < 41bp 0.559605607094118 0.879651377543606 0.89808476 0.8352323 prediction 0.640091540898976 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31890823 chr20:31890827 nonsynonymous SNV 0.316 0 25 hm5C_associated_SNPs_100696 0 0 0 0 1 exosome 0.500231643822248 0.500231588376014 0 0 hm5C_site_53841 DeepMRMD:0;iRNA_m5C:0 53842 chr7 154735807 154735807 1 + G T GBM 154735811 - 154735791 154735831 41 CTCCTGCGGTGCGGGGCTGGCTGTCTGGCTGGCGAGGAGCT CTCCTGCGGTGCGGGGCTGGCTGTATGGCTGGCGAGGAGCT < 41bp 0.549728102622155 0.869770609910135 0.022292733 0.19270787 prediction 0.640085014575959 Functional Gain - PAXIP1-AS2 ENSG00000214106 CDS Human antisense chr7:154735811 chr7:154735807 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_100697 0 0 1 0 0 unknown 0.500231643878464 0.500231643897968 0 3.9007241880995e-11 hm5C_site_53842 DeepMRMD:0;iRNA_m5C:3.9007241880995e-11 53843 chr1 156737808 156737808 1 + C A UCEC 156737804 + 156737784 156737824 41 ACCCCAGGCTTCAGCCTCCTCCCCCCTTGCCCTTCGGCCTG ACCCCAGGCTTCAGCCTCCTCCCCACTTGCCCTTCGGCCTG < 41bp 0.435137364053154 0.82002993079181 0.16322434 0.2812428 prediction 0.64005986158362 Functional Gain - PRCC ENSG00000143294 CDS Human protein_coding chr1:156737804 chr1:156737808 nonsynonymous SNV 0.804 2 25 hm5C_associated_SNPs_100698 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53843 DeepMRMD:0;iRNA_m5C:0 53844 chr20 6750897 6750897 1 + T G COAD 6750895 + 6750875 6750915 41 GGCGGCGTCGTCGGGCCGCCCCTCATCCCAGCCCTCTGACG GGCGGCGTCGTCGGGCCGCCCCGCATCCCAGCCCTCTGACG < 41bp 0.509962481637051 0.829954711861194 0.14945775 0.2981177 prediction 0.639984460448287 Functional Gain - BMP2 ENSG00000125845 CDS Human protein_coding chr20:6750895 chr20:6750897 nonsynonymous SNV 0.123 0 23 hm5C_associated_SNPs_100699 0 0 0 0 0 Ribosome 0.500231643849432 0.500231640518092 0 0 hm5C_site_53844 DeepMRMD:0;iRNA_m5C:0 53845 chr22 31521711 31521711 1 + C A UCEC 31521707 + 31521687 31521727 41 GACTTCTGTCCCCCACCTTCCGGCCTGGGGCCCCCTCAGGC GACTTCTGTCCCCCACCTTCCGGCATGGGGCCCCCTCAGGC < 41bp 0.436551485431521 0.819987931731645 0.66345155 0.8167064 prediction 0.639975863463291 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31521707 chr22:31521711 nonsynonymous SNV 0.572 3 25 hm5C_associated_SNPs_100700 0 0 1 0 0 Cytosol 0.500231644173009 0.500231643919634 0.3065097 0 hm5C_site_53845 DeepMRMD:0.3065097;iRNA_m5C:0 53846 chr7 5922210 5922210 1 + T G LUAD 5922207 + 5922187 5922227 41 ATCAGGTGAAGGATGTTTTCCGGTTCATAGACAACGACCAG ATCAGGTGAAGGATGTTTTCCGGGTCATAGACAACGACCAG < 41bp 0.456519660571169 0.819963863834811 0.2761268 0.8345505 prediction 0.639927727669621 Functional Gain - OCM ENSG00000122543 CDS Human protein_coding chr7:5922207 chr7:5922210 nonsynonymous SNV 0.854 0 24 hm5C_associated_SNPs_100701 0 0 0 0 2 exosome 0.500231643921092 0.50023164176553 0.669101 0 hm5C_site_53846 DeepMRMD:0.669101;iRNA_m5C:0 53847 chr11 55110843 55110843 1 + T G UCEC 55110840 + 55110820 55110860 41 TGGCAGCCCCTCCTTGGGCTCCCTAATGTACTTCTTCCTTG TGGCAGCCCCTCCTTGGGCTCCCGAATGTACTTCTTCCTTG < 41bp 0.47114666337337 0.819925772424139 0.17458397 0.19258639 prediction 0.639851544848278 Functional Gain - OR4A16 ENSG00000181961 CDS Human protein_coding chr11:55110840 chr11:55110843 nonsynonymous SNV 0.019 1 24 hm5C_associated_SNPs_100702 0 0 0 0 0 unknown 0.500231643921198 0.500231640869371 0 0 hm5C_site_53847 DeepMRMD:0;iRNA_m5C:0 53848 chr21 47423497 47423497 1 + C A HNSC 47423493 + 47423473 47423513 41 ACAGCGGCACGGGCCAGCAGCGCCCAGAGCGGGCGTCGCTG ACAGCGGCACGGGCCAGCAGCGCCAAGAGCGGGCGTCGCTG < 41bp 0.441416382106935 0.819922276918688 0.3925523 0.82808703 prediction 0.639844553837376 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47423493 chr21:47423497 nonsynonymous SNV 0.006 3 25 hm5C_associated_SNPs_100703 0 0 0 0 0 exosome 0.500231646409439 0.500231678435554 0.65617406 6.40522310746405e-08 hm5C_site_53848 DeepMRMD:0.65617406;iRNA_m5C:6.40522310746405e-08 53849 chr7 55479765 55479765 1 + C A UCEC 55479761 + 55479741 55479781 41 GGCGCCCCGGGGGTCATCCACATGCTCATGCAGGCGTACAA GGCGCCCCGGGGGTCATCCACATGATCATGCAGGCGTACAA < 41bp 0.437379503238839 0.819907574726198 0.4972411 0.67218876 prediction 0.639815149452396 Functional Gain - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55479761 chr7:55479765 nonsynonymous SNV 0.850 4 25 hm5C_associated_SNPs_100704 0 0 0 0 1 Ribosome 0.5002316439211 0.500231654527587 0.34437752 2.12129738219602e-08 hm5C_site_53849 DeepMRMD:0.34437752;iRNA_m5C:2.12129738219602e-08 53850 chr9 125273629 125273629 1 + C A MESO 125273625 + 125273605 125273645 41 CCATGTCTTCTGTGACCTTGCTGCCCTGCTCAAGCTGTCCT CCATGTCTTCTGTGACCTTGCTGCACTGCTCAAGCTGTCCT < 41bp 0.436494805633947 0.819889525629139 0.15129387 0.09358016 prediction 0.639779051258277 Functional Gain - OR1J2 ENSG00000197233 CDS Human protein_coding chr9:125273625 chr9:125273629 synonymous SNV . 0 25 hm5C_associated_SNPs_100705 0 0 0 0 0 exosome 0.500231689170487 0.500231737819393 0 9.72978115854062e-08 hm5C_site_53850 DeepMRMD:0;iRNA_m5C:9.72978115854062e-08 53851 chr1 248263459 248263459 1 + C A LUSC 248263455 + 248263435 248263475 41 CTTTTGTCTACACCTATCTTCGGCCCAGGAATCTCCGCTCA CTTTTGTCTACACCTATCTTCGGCACAGGAATCTCCGCTCA < 41bp 0.555587564629479 0.875461806994064 0.5961661 0.4466522 prediction 0.639748484729171 Functional Gain - OR2L13 ENSG00000196071 CDS Human protein_coding chr1:248263455 chr1:248263459 nonsynonymous SNV 0.002 4 25 hm5C_associated_SNPs_100706 0 0 0 0 0 Nucleus 0.500231643951496 0.500231647415956 0 6.92892121456623e-09 hm5C_site_53851 DeepMRMD:0;iRNA_m5C:6.92892121456623e-09 53852 chr1 99772006 99772006 1 + C A LUSC 99772002 + 99771982 99772022 41 AGCAACAGCCAGCCCCGAATCATGCAAGTCATAGCCATGTC AGCAACAGCCAGCCCCGAATCATGAAAGTCATAGCCATGTC < 41bp 0.565228574790812 0.885101696538323 0.034099013 0.13038841 prediction 0.639746243495021 Functional Gain - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99772002 chr1:99772006 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100707 0 0 0 0 0 exosome 0.500231643884631 0.500231643836221 0 0 hm5C_site_53852 DeepMRMD:0;iRNA_m5C:0 53853 chr15 90623540 90623540 1 + C A rs2970356 90623536 + 90623516 90623556 41 CTGCCCACCTCTACCTTGTCCAGGCCCCCTTCCCCGCCCTG CTGCCCACCTCTACCTTGTCCAGGACCCCTTCCCCGCCCTG < 41bp 0.474226194700975 0.81985669828419 0.8624792 0.8877615 prediction 0.63971339656838 Functional Gain - ZNF710-AS1 ENSG00000259291 ncRNA_intronic Human antisense chr15:90623536 chr15:90623540 . . 0 25 hm5C_associated_SNPs_100708 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0.0505646 2.22044604925031e-16 hm5C_site_53853 DeepMRMD:0.0505646;iRNA_m5C:2.22044604925031e-16 53854 chr5 169659987 169659987 1 + C A rs77367258 169659983 + 169659963 169660003 41 TCACCGTCGGCTCCCTGCTCCTGTCAGAACCTCGGTGACGG TCACCGTCGGCTCCCTGCTCCTGTAAGAACCTCGGTGACGG < 41bp 0.497985827133589 0.819837065345854 0.038598776 0.11423549 prediction 0.639674130691708 Functional Gain - C5orf58 ENSG00000234511 UTR5 Human protein_coding chr5:169659983 chr5:169659987 . . 0 25 hm5C_associated_SNPs_100709 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_53854 DeepMRMD:0;iRNA_m5C:0 53855 chr1 36552392 36552392 1 + C A SKCM 36552388 + 36552368 36552408 41 GATCGACAGAGGCTGTCTCTCTCTCAACCTCAGATCCCCAA GATCGACAGAGGCTGTCTCTCTCTAAACCTCAGATCCCCAA < 41bp 0.409607192309633 0.819832387525552 0.1503326 0.9333981 prediction 0.639664775051104 Functional Gain - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36552388 chr1:36552392 synonymous SNV . 0 25 hm5C_associated_SNPs_100710 0 0 0 0 2 exosome 0.500231644121443 0.500231643921067 0.8667962 0 hm5C_site_53855 DeepMRMD:0.8667962;iRNA_m5C:0 53856 chr5 140595534 140595534 1 + T G rs565343823 140595531 + 140595511 140595551 41 CTGCTCAAGGCCACGGAGCTCGGTCTGTTCGGCGTGTGGGC CTGCTCAAGGCCACGGAGCTCGGGCTGTTCGGCGTGTGGGC < 41bp 0.460559105048887 0.819823303724226 0.73229766 0.9013541 prediction 0.639646607448452 Functional Gain - PCDHB13 ENSG00000187372 CDS Human protein_coding chr5:140595531 chr5:140595534 synonymous SNV . 0 24 hm5C_associated_SNPs_100711 0 0 0 0 0 exosome 0.500231643610309 0.500231643920874 0.33811288 6.21128259936654e-10 hm5C_site_53856 DeepMRMD:0.33811288;iRNA_m5C:6.21128259936654e-10 53857 chr15 76496739 76496739 1 + C A rs540907463 76496735 + 76496715 76496755 41 CCCTGGAGGCTGCCAAGGGCCACACGCGGGGCCCAGGAGCC CCCTGGAGGCTGCCAAGGGCCACAAGCGGGGCCCAGGAGCC < 41bp 0.472386149127748 0.819811982673578 0.06753421 0.13950092 prediction 0.639623965347156 Functional Gain - TMEM266 ENSG00000169758 UTR3 Human protein_coding chr15:76496735 chr15:76496739 . . 0 25 hm5C_associated_SNPs_100712 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_53857 DeepMRMD:0;iRNA_m5C:0 53858 chr14 73637673 73637673 1 + T G SKCM 73637670 + 73637650 73637690 41 GCGCCAAGCATGTGATCATGCTCTTTGTCCCTGTGACTCTC GCGCCAAGCATGTGATCATGCTCGTTGTCCCTGTGACTCTC < 41bp 0.470677757073053 0.819740587818631 0.31379676 0.12034199 prediction 0.639481175637261 Functional Gain - PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637670 chr14:73637673 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_100713 0 0 1 0 1 Ribosome 0.502134423184829 0.500496427944355 0 0 hm5C_site_53858 DeepMRMD:0;iRNA_m5C:0 53859 chr2 131520539 131520539 1 + C A LUSC 131520535 + 131520515 131520555 41 CAGTGTGGAGCAGCTGGCCTCGCCCGCCCAGAATGAAGCCT CAGTGTGGAGCAGCTGGCCTCGCCAGCCCAGAATGAAGCCT < 41bp 0.423731361338554 0.819693014291951 0.33728427 0.8710513 prediction 0.639386028583903 Functional Gain - AMER3 ENSG00000178171 CDS Human protein_coding chr2:131520535 chr2:131520539 synonymous SNV . 0 25 hm5C_associated_SNPs_100714 0 0 0 0 0 Nucleus 0.500231643921092 0.500231644213408 0.7421026 5.84631010269732e-10 hm5C_site_53859 DeepMRMD:0.7421026;iRNA_m5C:5.84631010269732e-10 53860 chr11 73007683 73007683 1 + C A rs149749001 73007679 + 73007659 73007699 41 GTATTCGGCGGTGCTGGCGGCTGGCCTGCCGCTGAACATCT GTATTCGGCGGTGCTGGCGGCTGGACTGCCGCTGAACATCT < 41bp 0.445746901252187 0.819685115717864 0.30884892 0.5586649 prediction 0.639370231435728 Functional Gain - P2RY6 ENSG00000171631 CDS Human protein_coding chr11:73007679 chr11:73007683 synonymous SNV . 0 25 hm5C_associated_SNPs_100715 0 0 0 0 0 exosome 0.500232862547832 0.500231642377989 0.1173298 0 hm5C_site_53860 DeepMRMD:0.1173298;iRNA_m5C:0 53861 chr22 50988703 50988703 1 + C A rs182240520 50988699 + 50988679 50988719 41 CAGGGACTGATGCGTCTCCACAGACAAGGACTTGGCTCGCT CAGGGACTGATGCGTCTCCACAGAAAAGGACTTGGCTCGCT < 41bp 0.489731514665231 0.819679625534626 0.05121818 0.1723552 prediction 0.639359251069252 Functional Gain - KLHDC7B ENSG00000130487 UTR3 Human protein_coding chr22:50988699 chr22:50988703 . . 0 25 hm5C_associated_SNPs_100716 0 0 0 0 0 nucleolus 0.500231643923341 0.500231225376171 0 0 hm5C_site_53861 DeepMRMD:0;iRNA_m5C:0 53862 chr13 46287515 46287515 1 + C A rs200515699 46287511 + 46287491 46287531 41 GACCTGGAGCTGGACTACAACCCGCCGCGGGTGCAGCTCAG GACCTGGAGCTGGACTACAACCCGACGCGGGTGCAGCTCAG < 41bp 0.438183102044303 0.819673770402734 0.19203785 0.23568836 prediction 0.639347540805469 Functional Gain - SPERT ENSG00000174015 CDS Human protein_coding chr13:46287511 chr13:46287515 nonsynonymous SNV 0.661 4 25 hm5C_associated_SNPs_100717 0 0 0 0 0 exosome 0.500231973247525 0.500231644002082 0 0 hm5C_site_53862 DeepMRMD:0;iRNA_m5C:0 53863 chr3 122419983 122419983 1 + C A LGG 122419979 + 122419959 122419999 41 TGAAGAGAGAGGGCAGACTCCTACCGGGCAATGCCACCATC TGAAGAGAGAGGGCAGACTCCTACAGGGCAATGCCACCATC < 41bp 0.436776715718457 0.819645866462377 0.1634734 0.31137976 prediction 0.639291732924754 Functional Gain - PARP14 ENSG00000173193 CDS Human protein_coding chr3:122419979 chr3:122419983 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_100718 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643923819 0 5.45563594300802e-12 hm5C_site_53863 DeepMRMD:0;iRNA_m5C:5.45563594300802e-12 53864 chr1 27720459 27720459 1 + C A UCEC 27720455 + 27720435 27720475 41 GTGGTGCTCTGCATCTCAGGCACCCTGGTGTCCTGCGAGAA GTGGTGCTCTGCATCTCAGGCACCATGGTGTCCTGCGAGAA < 41bp 0.439244375296791 0.819631654726084 0.09091982 0.110637665 prediction 0.639263309452168 Functional Gain - GPR3 ENSG00000181773 CDS Human protein_coding chr1:27720455 chr1:27720459 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_100719 0 0 0 0 0 nucleoplasm 0.500231643560128 0.500231643536136 0 0 hm5C_site_53864 DeepMRMD:0;iRNA_m5C:0 53865 chr20 42697450 42697450 1 + C A SARC 42697446 + 42697426 42697466 41 CATCGGAGAGAGCAGTGACACACCCATTGCCCGGGGGCTGA CATCGGAGAGAGCAGTGACACACCAATTGCCCGGGGGCTGA < 41bp 0.567777341105196 0.887401809211236 0.17643902 0.33800477 prediction 0.639248936212081 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42697446 chr20:42697450 synonymous SNV . 0 25 hm5C_associated_SNPs_100720 0 0 1 0 0 exosome 0.500231551906421 0.500489251302498 0 0.000515398792155786 hm5C_site_53865 DeepMRMD:0;iRNA_m5C:0.000515398792155786 53866 chr7 6075760 6075760 1 + C A rs117715040 6075756 + 6075736 6075776 41 AGAGATACGGCACTTCTGGCCAGGCTACTTTATCACACTTA AGAGATACGGCACTTCTGGCCAGGATACTTTATCACACTTA < 41bp 0.453166501103622 0.819579528903694 0.30323714 0.38658366 prediction 0.639159057807388 Functional Gain - ANKRD61 ENSG00000157999 CDS Human protein_coding chr7:6075756 chr7:6075760 nonsynonymous SNV 0.082 2 25 hm5C_associated_SNPs_100721 0 0 1 0 0 chromatin 0.500232966837107 0.500233215077388 0 4.9648056088536e-07 hm5C_site_53866 DeepMRMD:0;iRNA_m5C:4.9648056088536e-07 53867 chr17 76219945 76219945 1 + T G rs17879146 76219942 + 76219922 76219962 41 GAAGTGAGGGAGGAAGAAGGCAGTGTCCCTTTTGCTAGAGC GAAGTGAGGGAGGAAGAAGGCAGGGTCCCTTTTGCTAGAGC < 41bp 0.547154987572192 0.866722600016928 0.488853 0.9021976 prediction 0.639135224889472 Functional Gain - BIRC5 ENSG00000268310 CDS Human other chr17:76219942 chr17:76219945 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_100722 0 1 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.8043952 0 hm5C_site_53867 DeepMRMD:0.8043952;iRNA_m5C:0 53868 chr9 132632061 132632061 1 + C A STAD 132632057 + 132632037 132632077 41 CCAGAATGTGCCGGCCAAGCCAGGCGCCTGTGGGGACAGCT CCAGAATGTGCCGGCCAAGCCAGGAGCCTGTGGGGACAGCT < 41bp 0.564370082038118 0.883928637599403 0.8561027 0.8868251 prediction 0.63911711112257 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132632057 chr9:132632061 synonymous SNV . 0 25 hm5C_associated_SNPs_100723 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0.0614448000000001 0 hm5C_site_53868 DeepMRMD:0.0614448000000001;iRNA_m5C:0 53869 chr14 74516658 74516658 1 + C A OV 74516654 + 74516634 74516674 41 AAATGAATCGTGTGAAGAAGCTGGCCAAGAACATACTGGAT AAATGAATCGTGTGAAGAAGCTGGACAAGAACATACTGGAT < 41bp 0.568532542485203 0.888087159285814 0.33439305 0.3620512 prediction 0.639109233601221 Functional Gain - BBOF1 ENSG00000119636 CDS Human protein_coding chr14:74516654 chr14:74516658 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_100724 0 0 0 0 0 chromatin 0.500231653601863 0.500231643922409 0 0 hm5C_site_53869 DeepMRMD:0;iRNA_m5C:0 53870 chr12 10339131 10339131 1 + T G SARC 10339128 + 10339108 10339148 41 GGGAAGATGGGGGCCCACCACCCTGTGAAGTGACCGTCATT GGGAAGATGGGGGCCCACCACCCGGTGAAGTGACCGTCATT < 41bp 0.445754876472325 0.819543580013921 0.097810775 0.29557618 prediction 0.639087160027841 Functional Gain - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10339128 chr12:10339131 nonsynonymous SNV 0.107 0 24 hm5C_associated_SNPs_100725 0 0 0 0 1 nucleus 0.500248926424788 0.500231643921092 0 0 hm5C_site_53870 DeepMRMD:0;iRNA_m5C:0 53871 chrX 48341100 48341100 1 + C A LUAD 48341096 + 48341076 48341116 41 GGCAGCTGGCCAAGGAGATCCGCCCCCAGGACTGCCCCATC GGCAGCTGGCCAAGGAGATCCGCCACCAGGACTGCCCCATC < 41bp 0.57994255835402 0.899484311989507 0.10262412 0.41585073 prediction 0.639083507270974 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48341096 chrX:48341100 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_100726 0 0 1 0 1 Ribosome 0.500231651137928 0.500231644036605 0 0 hm5C_site_53871 DeepMRMD:0;iRNA_m5C:0 53872 chr9 125552097 125552097 1 + C A UCEC 125552093 + 125552073 125552113 41 TCTCTCAACCCACTCATCTACAGCCTCCGCAATAAGGAGGT TCTCTCAACCCACTCATCTACAGCATCCGCAATAAGGAGGT < 41bp 0.449047795857304 0.819496044055473 0.15404105 0.11008987 prediction 0.638992088110945 Functional Gain - OR5C1 ENSG00000148215 CDS Human protein_coding chr9:125552093 chr9:125552097 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100727 0 0 0 0 0 unknown 0.500231643921203 0.500231643912731 0 0 hm5C_site_53872 DeepMRMD:0;iRNA_m5C:0 53873 chr6 30312962 30312962 1 + T G rs201417696 30312959 + 30312939 30312979 41 CGCGGCGGTGATGGCGGGGCCGGTGAAGGACCGCGAGGCCT CGCGGCGGTGATGGCGGGGCCGGGGAAGGACCGCGAGGCCT < 41bp 0.47782363951939 0.819488093314183 0.7830841 0.8970295 prediction 0.638976186628365 Functional Gain - RPP21 ENSG00000241370 CDS Human protein_coding chr6:30312959 chr6:30312962 nonsynonymous SNV 0.962 4 24 hm5C_associated_SNPs_100728 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.2278908 0 hm5C_site_53873 DeepMRMD:0.2278908;iRNA_m5C:0 53874 chr17 20744373 20744373 1 + C A rs565053634 20744369 + 20744349 20744389 41 CGGCGCCCGCCATGAACGGGCTGTCGTTGAGTGAGCTCTGC CGGCGCCCGCCATGAACGGGCTGTAGTTGAGTGAGCTCTGC < 41bp 0.495793991485528 0.819481903962739 0.1256819 0.16044462 prediction 0.638963807925479 Functional Gain - LOC100287072;CCDC144NL ENSG00000226981 ncRNA_exonic Human unprocessed_pseudogene chr17:20744369 chr17:20744373 . . 0 25 hm5C_associated_SNPs_100729 0 0 0 0 0 unknown 0.500231634893048 0.500226309504377 0 0 hm5C_site_53874 DeepMRMD:0;iRNA_m5C:0 53875 chrX 26158113 26158113 1 + C A LUAD 26158109 + 26158089 26158129 41 TGCACGTTCCAGAACCACGTCTAGCAGCTTCTCCCATGCTA TGCACGTTCCAGAACCACGTCTAGAAGCTTCTCCCATGCTA < 41bp 0.439691082930746 0.81944279839809 0.11699796 0.26984292 prediction 0.63888559679618 Functional Gain - MAGEB18 ENSG00000176774 CDS Human protein_coding chrX:26158109 chrX:26158113 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_100730 0 0 0 0 1 unknown 0.500231643921097 0.500231643921094 0 0 hm5C_site_53875 DeepMRMD:0;iRNA_m5C:0 53876 chr16 22926624 22926624 1 + C A ACC 22926620 + 22926600 22926640 41 GCGAGCGACTCATCACTGACCCGGCCGGCGAGATGGGGCGA GCGAGCGACTCATCACTGACCCGGACGGCGAGATGGGGCGA < 41bp 0.439960125360147 0.81942996996347 0.6958166 0.4864789 prediction 0.63885993992694 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926620 chr16:22926624 nonsynonymous SNV 0.587 5 25 hm5C_associated_SNPs_100731 0 0 0 0 0 exosome 0.500232042673959 0.500252688389628 0 4.12914313376866e-05 hm5C_site_53876 DeepMRMD:0;iRNA_m5C:4.12914313376866e-05 53877 chr12 49934763 49934763 1 + C A UCEC 49934759 + 49934739 49934779 41 GCTCTGATGGCTTCTGTGACCTCACGGGCTTCTCCCGGGCT GCTCTGATGGCTTCTGTGACCTCAAGGGCTTCTCCCGGGCT < 41bp 0.424135466458115 0.819401395632281 0.203834 0.21698192 prediction 0.638802791264562 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49934759 chr12:49934763 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_100732 0 0 0 0 2 chromatin 0.500231643950474 0.500231643921092 0 0 hm5C_site_53877 DeepMRMD:0;iRNA_m5C:0 53878 chr21 46021089 46021089 1 + C A LUAD 46021085 + 46021065 46021105 41 AGCTGTGTGAGCTGTGTGTCCAGCCCCTGCTGCCAGGCGGT AGCTGTGTGAGCTGTGTGTCCAGCACCTGCTGCCAGGCGGT < 41bp 0.536959431541876 0.85633913169554 0.28650096 0.25500298 prediction 0.638759400307328 Functional Gain - KRTAP10-7 ENSG00000205441 CDS Human other chr21:46021085 chr21:46021089 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100733 0 0 0 0 0 unknown 0.50023164392265 0.500278267188889 0 9.32465324789966e-05 hm5C_site_53878 DeepMRMD:0;iRNA_m5C:9.32465324789966e-05 53879 chr7 143747922 143747922 1 + T G LUAD 143747919 + 143747899 143747939 41 CATGAGATGGGGAGTGTGCACAGTCCTGGCTGTCACTTCTT CATGAGATGGGGAGTGTGCACAGGCCTGGCTGTCACTTCTT < 41bp 0.553024470444433 0.872350598035731 0.40387863 0.830674 prediction 0.638652255182595 Functional Gain - OR2A5 ENSG00000221836 CDS Human protein_coding chr7:143747919 chr7:143747922 nonsynonymous SNV 0.015 0 24 hm5C_associated_SNPs_100734 0 0 0 0 0 unknown 0.500231643944181 0.500231680798474 0.661348 7.37085847912766e-08 hm5C_site_53879 DeepMRMD:0.661348;iRNA_m5C:7.37085847912766e-08 53880 chr1 154439267 154439267 1 + T G rs142901087 154439264 + 154439244 154439284 41 AGCCTGGGAGGTCAAGGCTGCAGTGAGCCGAGATTGCACCA AGCCTGGGAGGTCAAGGCTGCAGGGAGCCGAGATTGCACCA < 41bp 0.542926880545488 0.862238778982002 0.8541502 0.9237374 prediction 0.638623796873028 Functional Gain - IL6R ENSG00000160712 UTR3 Human protein_coding chr1:154439264 chr1:154439267 . . 0 24 hm5C_associated_SNPs_100735 0 0 0 0 0 Cytosol 0.50023164326365 0.500231643921092 0.1391744 1.31488486765363e-09 hm5C_site_53880 DeepMRMD:0.1391744;iRNA_m5C:1.31488486765363e-09 53881 chr11 111965680 111965680 1 + C A UCEC 111965676 + 111965656 111965696 41 GGCATCTGCAAAGCTGTTGCCATGCTGTGGAAGCTCTGACC GGCATCTGCAAAGCTGTTGCCATGATGTGGAAGCTCTGACC < 41bp 0.451250513740706 0.819308604276194 0.28732076 0.3188811 prediction 0.638617208552388 Functional Gain - SDHD ENSG00000204370 CDS Human protein_coding chr11:111965676 chr11:111965680 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_100736 0 0 0 0 0 Ribosome 0.500233283388297 0.500231668969818 0 0 hm5C_site_53881 DeepMRMD:0;iRNA_m5C:0 53882 chr1 159175785 159175785 1 + C A UCEC 159175781 + 159175761 159175801 41 GCCCTACTGACACTGCCTGTCACCCTGGCCAGTGGTGCTTC GCCCTACTGACACTGCCTGTCACCATGGCCAGTGGTGCTTC < 41bp 0.57611303636873 0.895388357460948 0.10865617 0.2130189 prediction 0.638550642184436 Functional Gain - ACKR1 ENSG00000213088 CDS Human protein_coding chr1:159175781 chr1:159175785 nonsynonymous SNV 0.016 3 25 hm5C_associated_SNPs_100737 0 0 0 0 0 Endoplasmic reticulum 0.500225158431179 0.500230877779933 0 1.14386975087477e-05 hm5C_site_53882 DeepMRMD:0;iRNA_m5C:1.14386975087477e-05 53883 chr11 73007975 73007975 1 + C A SARC 73007971 + 73007951 73007991 41 CACCCGCTGGCCCCCTGGCACAAACGTGGGGGCCGCCGGGC CACCCGCTGGCCCCCTGGCACAAAAGTGGGGGCCGCCGGGC < 41bp 0.553334977967661 0.872594086114417 0.60424536 0.8329103 prediction 0.638518216293512 Functional Gain - P2RY6 ENSG00000171631 CDS Human protein_coding chr11:73007971 chr11:73007975 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_100738 0 0 0 0 0 exosome 0.500231643925357 0.500231643921093 0.45732988 0 hm5C_site_53883 DeepMRMD:0.45732988;iRNA_m5C:0 53884 chr19 50150037 50150037 1 + C A LUAD 50150033 + 50150013 50150053 41 GGGACAGAGATCCCATCCCTCTGCCTGTGCCCAGCCTGCTG GGGACAGAGATCCCATCCCTCTGCATGTGCCCAGCCTGCTG < 41bp 0.570953026489771 0.890199690521455 0.34551796 0.5607338 prediction 0.63849332806337 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50150033 chr19:50150037 nonsynonymous SNV 0.981 2 25 hm5C_associated_SNPs_100739 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643923702 0.1214676 5.22137888481211e-12 hm5C_site_53884 DeepMRMD:0.1214676;iRNA_m5C:5.22137888481211e-12 53885 chr21 26946433 26946433 1 + C A LIHC 26946429 + 26946409 26946449 41 GATGACAAAGAAGCATGAGTCACCCTGCTGGATAAACTTAG GATGACAAAGAAGCATGAGTCACCATGCTGGATAAACTTAG < 41bp 0.44937255960473 0.819234126313701 0.15203905 0.24301618 prediction 0.638468252627402 Functional Gain - MIR155HG ENSG00000234883 ncRNA_exonic Human lincRNA chr21:26946429 chr21:26946433 . . 0 25 hm5C_associated_SNPs_100740 0 0 0 1 0 unknown 0.500231558319051 0.500231502364993 0 0 hm5C_site_53885 DeepMRMD:0;iRNA_m5C:0 53886 chr7 331416 331416 1 + C A rs147887069 331412 + 331392 331432 41 CTCGCACAAGAGGGCAGATACCCGCGGCTGGAGAACGTGGG CTCGCACAAGAGGGCAGATACCCGAGGCTGGAGAACGTGGG < 41bp 0.488781448930223 0.819223416478019 0.79772675 0.9003316 prediction 0.638446832956038 Functional Gain - FAM20C;LOC442497 ENSG00000248767 ncRNA_exonic Human protein_coding chr7:331412 chr7:331416 . . 0 25 hm5C_associated_SNPs_100741 0 0 0 0 0 unknown 0.500231643584016 0.500231643921093 0.2052097 6.74152289548147e-10 hm5C_site_53886 DeepMRMD:0.2052097;iRNA_m5C:6.74152289548147e-10 53887 chr9 127636001 127636001 1 + C A UCEC 127635997 + 127635977 127636017 41 CATGCTTCGGGCATTCCATGCAGCCTTGCGGAACTCTCCCG CATGCTTCGGGCATTCCATGCAGCATTGCGGAACTCTCCCG < 41bp 0.569022781491041 0.888245151399829 0.4867238 0.3721948 prediction 0.638444739817577 Functional Gain - ARPC5L ENSG00000136950 CDS Human protein_coding chr9:127635997 chr9:127636001 synonymous SNV . 0 25 hm5C_associated_SNPs_100742 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921546 0 9.07940389538453e-13 hm5C_site_53887 DeepMRMD:0;iRNA_m5C:9.07940389538453e-13 53888 chr2 24245740 24245740 1 + T G UCEC 24245737 + 24245717 24245757 41 TGTGGGAGTGGGTTCTCCAGCGCTTTGGGAAGAAGACGTCA TGTGGGAGTGGGTTCTCCAGCGCGTTGGGAAGAAGACGTCA < 41bp 0.455788715822756 0.819217066140713 0.910796 0.9094093 prediction 0.638434132281425 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24245737 chr2:24245740 nonsynonymous SNV 0.863 5 24 hm5C_associated_SNPs_100743 0 0 0 0 2 Endoplasmic reticulum 0.500231424100419 0.500231643921093 0 4.3964134954777e-07 hm5C_site_53888 DeepMRMD:0;iRNA_m5C:4.3964134954777e-07 53889 chr12 81101569 81101569 1 + C A BRCA 81101565 + 81101545 81101585 41 ATGGGGAAAATGTTACTCTGCAGCCATTAGAAGTGGCAGAA ATGGGGAAAATGTTACTCTGCAGCAATTAGAAGTGGCAGAA < 41bp 0.446770553492193 0.819212932939651 0.3138103 0.2603039 prediction 0.638425865879302 Functional Gain - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81101565 chr12:81101569 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_100744 0 0 0 0 0 unknown 0.500231643921092 0.500231643773761 0 0 hm5C_site_53889 DeepMRMD:0;iRNA_m5C:0 53890 chrX 53223775 53223775 1 + G T SARC 53223779 - 53223759 53223799 41 TCTGTGTGTGTGGGCAGGTGCTGGCTGGGGCGGGAGCTCTG TCTGTGTGTGTGGGCAGGTGCTGGATGGGGCGGGAGCTCTG < 41bp 0.567154474281116 0.886334262998558 0.27557468 0.47011027 prediction 0.638359577434885 Functional Gain - KDM5C ENSG00000126012 CDS Human protein_coding chrX:53223779 chrX:53223775 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_100745 0 0 1 0 0 Nucleus 0.500231643921092 0.500231644444477 0 1.04676955992034e-09 hm5C_site_53890 DeepMRMD:0;iRNA_m5C:1.04676955992034e-09 53891 chr6 47650109 47650109 1 + T A LUSC 47650105 + 47650085 47650125 41 ACTGGGACATGACCAAAGCCCTCCTGGCCTTCGTGATCCCA ACTGGGACATGACCAAAGCCCTCCAGGCCTTCGTGATCCCA < 41bp 0.512363668261548 0.831543245832162 0.04786983 0.91942084 prediction 0.638359155141228 Functional Gain - ADGRF2 ENSG00000164393 CDS Human protein_coding chr6:47650105 chr6:47650109 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_100746 0 0 0 0 0 exosome 0.50023164392153 0.500231643928406 0.83884168 1.37529987398466e-11 hm5C_site_53891 DeepMRMD:0.83884168;iRNA_m5C:1.37529987398466e-11 53892 chr22 24909375 24909375 1 + C A LUSC 24909371 + 24909351 24909391 41 TGGGGATGTTTTGTGGAATACAGCCGTGGTGATCTCCAATT TGGGGATGTTTTGTGGAATACAGCAGTGGTGATCTCCAATT < 41bp 0.574855713560631 0.894025133307894 0.16344112 0.22742674 prediction 0.638338839494526 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24909371 chr22:24909375 synonymous SNV . 0 25 hm5C_associated_SNPs_100747 0 0 0 0 2 exosome 0.500231643921092 0.500231643921349 0 5.14033260401447e-13 hm5C_site_53892 DeepMRMD:0;iRNA_m5C:5.14033260401447e-13 53893 chr3 46414666 46414666 1 + C A LIHC 46414662 + 46414642 46414682 41 CCCCTTCTGGGCTCACTATGCTGCCGCCCAGTGGGACTTTG CCCCTTCTGGGCTCACTATGCTGCAGCCCAGTGGGACTTTG < 41bp 0.563232532250832 0.88238179664615 0.096891254 0.07948527 prediction 0.638298528790636 Functional Gain - CCR5 ENSG00000160791 CDS Human protein_coding chr3:46414662 chr3:46414666 synonymous SNV . 0 25 hm5C_associated_SNPs_100748 0 0 0 0 0 exosome 0.500231643921108 0.500231644247162 0 6.52109033438819e-10 hm5C_site_53893 DeepMRMD:0;iRNA_m5C:6.52109033438819e-10 53894 chr11 45826847 45826847 1 + C A rs544832316 45826843 + 45826823 45826863 41 TCCGCAGCCCTCCCTCCAGCCGCGCCCGGCCTCCGGCAGCT TCCGCAGCCCTCCCTCCAGCCGCGACCGGCCTCCGGCAGCT < 41bp 0.523768059730545 0.842911993785278 0.3230731 0.6272845 prediction 0.638287868109466 Functional Gain - SLC35C1 ENSG00000181830 UTR5 Human protein_coding chr11:45826843 chr11:45826847 . . 0 25 hm5C_associated_SNPs_100749 0 0 0 0 0 Endoplasmic reticulum 0.500231643921094 0.500231643923732 0.254569 5.27489163459904e-12 hm5C_site_53894 DeepMRMD:0.254569;iRNA_m5C:5.27489163459904e-12 53895 chr18 61390704 61390704 1 + C A COAD 61390700 + 61390680 61390720 41 ACAATCCTGTGACTTTCCCACGGCCAAAAAGCTGTTCACAC ACAATCCTGTGACTTTCCCACGGCAAAAAAGCTGTTCACAC < 41bp 0.47997500206647 0.819122535931906 0.65543145 0.546148 prediction 0.638245071863812 Functional Gain - SERPINB11 ENSG00000206072 UTR3 Human protein_coding chr18:61390700 chr18:61390704 . . 0 25 hm5C_associated_SNPs_100750 0 0 0 0 0 exosome 0.500231643921092 0.500231648974548 0 1.0106910863783e-08 hm5C_site_53895 DeepMRMD:0;iRNA_m5C:1.0106910863783e-08 53896 chr12 120899830 120899830 1 + G T ESCA 120899834 - 120899814 120899854 41 CCACACTACTTCTCTCCTTTCAGGCCCTACTGAGACAGGTG CCACACTACTTCTCTCCTTTCAGGACCTACTGAGACAGGTG < 41bp 0.450896997354627 0.819119704049748 0.5241688 0.7151985 prediction 0.638239408099497 Functional Gain - SRSF9 ENSG00000111786 CDS Human protein_coding chr12:120899834 chr12:120899830 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_100751 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921092 0.3820594 0 hm5C_site_53896 DeepMRMD:0.3820594;iRNA_m5C:0 53897 chr6 43098280 43098280 1 + C A UCEC 43098276 + 43098256 43098296 41 CTTTGCCAGGGTGGTGCTGGCACCCCAGGACGTGGTAGTAG CTTTGCCAGGGTGGTGCTGGCACCACAGGACGTGGTAGTAG < 41bp 0.42570268674175 0.819107002364398 0.13089621 0.12490669 prediction 0.638214004728795 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43098276 chr6:43098280 synonymous SNV . 0 25 hm5C_associated_SNPs_100752 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643906995 0 0 hm5C_site_53897 DeepMRMD:0;iRNA_m5C:0 53898 chr13 25262530 25262530 1 + C A PAAD 25262526 + 25262506 25262546 41 ACTCCCTCACCCCTCCCAAGCAGACGCCTGAGATCGTCAAG ACTCCCTCACCCCTCCCAAGCAGAAGCCTGAGATCGTCAAG < 41bp 0.444897424434358 0.81906018130405 0.28662312 0.25360268 prediction 0.638120362608099 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25262526 chr13:25262530 nonsynonymous SNV 0.607 3 25 hm5C_associated_SNPs_100753 0 0 0 0 0 Nucleus 0.500231696128491 0.500231592161895 0 0 hm5C_site_53898 DeepMRMD:0;iRNA_m5C:0 53899 chr9 107332319 107332319 1 + C A HNSC 107332315 + 107332295 107332335 41 TTCTATGGAGTGATGACTCCCATGCTTAATCCTCTCATCTA TTCTATGGAGTGATGACTCCCATGATTAATCCTCTCATCTA < 41bp 0.472831053749544 0.819032792303719 0.008689553 0.039165318 prediction 0.638065584607438 Functional Gain - OR13C8 ENSG00000186943 CDS Human protein_coding chr9:107332315 chr9:107332319 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_100754 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_53899 DeepMRMD:0;iRNA_m5C:0 53900 chr16 27078632 27078632 1 + C A rs144063867 27078628 + 27078608 27078648 41 AGCGACATCAGCTTGGTGGGCAGCCACCGGAGAGTGCGGCT AGCGACATCAGCTTGGTGGGCAGCAACCGGAGAGTGCGGCT < 41bp 0.527369852553927 0.846392077465459 0.35832402 0.5479817 prediction 0.638044449823063 Functional Gain - C16orf82 ENSG00000234186 ncRNA_exonic Human protein_coding chr16:27078628 chr16:27078632 . . 0 25 hm5C_associated_SNPs_100755 0 0 0 0 0 unknown 0.500231658753894 0.500231643921464 0.0959634 0 hm5C_site_53900 DeepMRMD:0.0959634;iRNA_m5C:0 53901 chr11 3681265 3681265 1 + C A LUAD 3681261 + 3681241 3681281 41 CCTGGGCAGCGGCCAGCGTCCACCCCGGTGCCACCAGGTGT CCTGGGCAGCGGCCAGCGTCCACCACGGTGCCACCAGGTGT < 41bp 0.573154470563013 0.892127077758734 0.20498008 0.25107467 prediction 0.637945214391441 Functional Gain - ART1 ENSG00000129744 CDS Human protein_coding chr11:3681261 chr11:3681265 synonymous SNV . 0 25 hm5C_associated_SNPs_100756 0 0 0 0 0 exosome 0.500231643897084 0.500231643921092 0 4.80178119488528e-11 hm5C_site_53901 DeepMRMD:0;iRNA_m5C:4.80178119488528e-11 53902 chr1 184020918 184020918 1 + C A rs61739880 184020914 + 184020894 184020934 41 AGGAGCGCGGCGATTCCGAGCCGACCCCCGGCTGCAGCGGC AGGAGCGCGGCGATTCCGAGCCGAACCCCGGCTGCAGCGGC < 41bp 0.494060150524187 0.81894793281912 0.23043463 0.3521937 prediction 0.63789586563824 Functional Gain - TSEN15 ENSG00000198860 CDS Human protein_coding chr1:184020914 chr1:184020918 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_100757 0 0 1 0 0 Ribosome 0.500231643905721 0.500231643921092 0 3.07425196410804e-11 hm5C_site_53902 DeepMRMD:0;iRNA_m5C:3.07425196410804e-11 53903 chr19 22847005 22847005 1 + T G UCEC 22847002 + 22846982 22847022 41 TGTAAAGAATGTGGGAAAGCCTATAATGAGACCTCAAACCT TGTAAAGAATGTGGGAAAGCCTAGAATGAGACCTCAAACCT < 41bp 0.522722876711043 0.841654155242922 0.6609423 0.2592469 prediction 0.637862557063757 Functional Gain - ZNF492 ENSG00000229676 CDS Human protein_coding chr19:22847002 chr19:22847005 stopgain 0.000 0 24 hm5C_associated_SNPs_100758 0 0 0 0 0 exosome 0.500231643921092 0.500231643921509 0 8.32667268468867e-13 hm5C_site_53903 DeepMRMD:0;iRNA_m5C:8.32667268468867e-13 53904 chr2 132021852 132021852 1 + C A UCEC 132021848 + 132021828 132021868 41 TCCTCCCTAGAGAAGAGCTACGAGCTGCCCGATGGCCAGGT TCCTCCCTAGAGAAGAGCTACGAGATGCCCGATGGCCAGGT < 41bp 0.45209010324292 0.818926384035545 0.3090781 0.7707765 prediction 0.637852768071089 Functional Gain - POTEE ENSG00000188219 CDS Human protein_coding chr2:132021848 chr2:132021852 nonsynonymous SNV 0.205 2 25 hm5C_associated_SNPs_100759 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.541553 6.66133814775094e-16 hm5C_site_53904 DeepMRMD:0.541553;iRNA_m5C:6.66133814775094e-16 53905 chr19 10531609 10531609 1 + C A rs201432982 10531605 + 10531585 10531625 41 TCCGACAGCGCGGAGCGCGCCGAGCGGGAGCGGCAGCCGCA TCCGACAGCGCGGAGCGCGCCGAGAGGGAGCGGCAGCCGCA < 41bp 0.542654913051317 0.861575278106932 0.61903733 0.868049 prediction 0.63784073011123 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10531605 chr19:10531609 synonymous SNV . 0 25 hm5C_associated_SNPs_100760 0 0 0 0 0 chromatin 0.500231683300389 0.500232567429112 0.49802334 1.76825744557796e-06 hm5C_site_53905 DeepMRMD:0.49802334;iRNA_m5C:1.76825744557796e-06 53906 chr1 196928195 196928195 1 + T G HNSC 196928192 + 196928172 196928212 41 AATGGGAAACTGGTATATCCCAGTTGTGAAGAAAAATAGAA AATGGGAAACTGGTATATCCCAGGTGTGAAGAAAAATAGAA < 41bp 0.506750254753762 0.825637236283466 0.21221095 0.8043959 prediction 0.637773963059407 Functional Gain - CFHR2 ENSG00000080910 CDS Human protein_coding chr1:196928192 chr1:196928195 nonsynonymous SNV 0.046 1 24 hm5C_associated_SNPs_100761 0 0 0 0 0 exosome 0.500231643921091 0.500231643921436 0.6087918 6.89448498292222e-13 hm5C_site_53906 DeepMRMD:0.6087918;iRNA_m5C:6.89448498292222e-13 53907 chr7 150069867 150069867 1 + C A rs192436969 150069863 + 150069843 150069883 41 CACCGGCGCATCCACACGGGCGAGCGGCCCTACGCCTGTCC CACCGGCGCATCCACACGGGCGAGAGGCCCTACGCCTGTCC < 41bp 0.539430450369335 0.858288316562175 0.663827 0.8863878 prediction 0.63771573238568 Functional Gain - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150069863 chr7:150069867 synonymous SNV . 0 25 hm5C_associated_SNPs_100762 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.4451216 0 hm5C_site_53907 DeepMRMD:0.4451216;iRNA_m5C:0 53908 chr17 80333246 80333246 1 + C A LIHC 80333242 + 80333222 80333262 41 CCGTTCCCTCCCTGCAGCCCCGCGCCCGCTTCCAGCGCTGT CCGTTCCCTCCCTGCAGCCCCGCGACCGCTTCCAGCGCTGT < 41bp 0.512962699732898 0.831807963396877 0.3350745 0.6330927 prediction 0.637690527327958 Functional Gain - UTS2R ENSG00000181408 CDS Human protein_coding chr17:80333242 chr17:80333246 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_100763 0 0 1 0 0 exosome 0.500231644206414 0.500231565343524 0.2661854 0 hm5C_site_53908 DeepMRMD:0.2661854;iRNA_m5C:0 53909 chr1 248129382 248129382 1 + C A LUAD 248129378 + 248129358 248129398 41 AGATGAGCTCAGGAAAAGGACAGGCAAAAGCTGTTTCCACT AGATGAGCTCAGGAAAAGGACAGGAAAAAGCTGTTTCCACT < 41bp 0.468130535753812 0.818837523030295 0.22857884 0.3326209 prediction 0.637675046060589 Functional Gain - OR2AK2 ENSG00000187080 CDS Human protein_coding chr1:248129378 chr1:248129382 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100764 0 0 0 0 0 exosome 0.500231665267506 0.500231686523098 0 4.25111847945914e-08 hm5C_site_53909 DeepMRMD:0;iRNA_m5C:4.25111847945914e-08 53910 chr2 27322662 27322662 1 + G T LUAD 27322666 - 27322646 27322686 41 ATGGAGGGGAGAAGGCGATGCAGCCGCAATGGTAGTCTCCA ATGGAGGGGAGAAGGCGATGCAGCAGCAATGGTAGTCTCCA < 41bp 0.47219684826061 0.818818165166442 0.59418905 0.48622054 prediction 0.637636330332883 Functional Gain - CGREF1 ENSG00000138028 CDS Human protein_coding chr2:27322666 chr2:27322662 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100765 0 0 0 0 1 Endoplasmic reticulum 0.500231643918042 0.500231669566155 0 5.12962265997174e-08 hm5C_site_53910 DeepMRMD:0;iRNA_m5C:5.12962265997174e-08 53911 chr20 57896143 57896143 1 + C A LUSC 57896139 + 57896119 57896159 41 GCAAGAGGTCTGCGGGGCCACTTCCAGGGAATCTGCAGCTC GCAAGAGGTCTGCGGGGCCACTTCAAGGGAATCTGCAGCTC < 41bp 0.404530235990771 0.818815123291466 0.3469074 0.83413494 prediction 0.637630246582931 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57896139 chr20:57896143 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_100766 0 0 0 0 1 exosome 0.500231643900564 0.500231604186853 0.66826988 0 hm5C_site_53911 DeepMRMD:0.66826988;iRNA_m5C:0 53912 chr19 58846488 58846488 1 + C A UCEC 58846484 + 58846464 58846504 41 GTGCGCTGCCCCCAGAGATCCAAGCCTGGGTGGGAGCCCAG GTGCGCTGCCCCCAGAGATCCAAGACTGGGTGGGAGCCCAG < 41bp 0.564897179333196 0.883710823385844 0.2975307 0.3598067 prediction 0.637627288105296 Functional Gain - ZSCAN22 ENSG00000182318 CDS Human protein_coding chr19:58846484 chr19:58846488 nonsynonymous SNV 0.539 1 25 hm5C_associated_SNPs_100767 0 0 0 0 2 Cytosol 0.500231645098501 0.50023164745059 0 4.70417926834443e-09 hm5C_site_53912 DeepMRMD:0;iRNA_m5C:4.70417926834443e-09 53913 chr1 186276582 186276582 1 + C A LUAD 186276578 + 186276558 186276598 41 ACCCACCACCCCCAAGAAGCCTGCCCCAACTACCCCCAAGG ACCCACCACCCCCAAGAAGCCTGCACCAACTACCCCCAAGG < 41bp 0.435557122643399 0.8188001639201 0.15186858 0.122810245 prediction 0.637600327840199 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276578 chr1:186276582 synonymous SNV . 0 25 hm5C_associated_SNPs_100768 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643921092 0 0 hm5C_site_53913 DeepMRMD:0;iRNA_m5C:0 53914 chr10 112838481 112838481 1 + C A LUAD 112838477 + 112838457 112838497 41 TACCAGATCGCCAAGCGTCGCACCCGCGTGCCACCCAGCCG TACCAGATCGCCAAGCGTCGCACCAGCGTGCCACCCAGCCG < 41bp 0.554500956392267 0.873300799735349 0.046647727 0.11426669 prediction 0.637599686686163 Functional Gain - ADRA2A ENSG00000150594 CDS Human protein_coding chr10:112838477 chr10:112838481 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_100769 0 0 0 0 0 exosome 0.50023164114411 0.500231631382617 0 0 hm5C_site_53914 DeepMRMD:0;iRNA_m5C:0 53915 chr6 112671308 112671308 1 + C A COAD 112671304 + 112671284 112671324 41 ATCTGACAAAAGATCCCAGGCTGGCCTGTGTCCTGGGTACT ATCTGACAAAAGATCCCAGGCTGGACTGTGTCCTGGGTACT < 41bp 0.561187297525468 0.879970698232899 0.123578936 0.18474054 prediction 0.637566801414861 Functional Gain - RFPL4B ENSG00000251258 CDS Human protein_coding chr6:112671304 chr6:112671308 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_100770 0 0 0 0 0 unknown 0.500231643921092 0.500231643919635 0 0 hm5C_site_53915 DeepMRMD:0;iRNA_m5C:0 53916 chr1 153391744 153391744 1 + C A PRAD 153391740 + 153391720 153391760 41 GACATAGCCGCAGACTACCACAAGCAGAGCCATGGAGCGGC GACATAGCCGCAGACTACCACAAGAAGAGCCATGGAGCGGC < 41bp 0.456472284085582 0.818779008441539 0.68004364 0.908236 prediction 0.637558016883077 Functional Gain - S100A7A ENSG00000184330 CDS Human protein_coding chr1:153391740 chr1:153391744 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_100771 0 0 0 0 0 unknown 0.500231643918203 0.500231655072399 0.45638472 2.23083904682397e-08 hm5C_site_53916 DeepMRMD:0.45638472;iRNA_m5C:2.23083904682397e-08 53917 chr19 55221659 55221659 1 + C A LUAD 55221655 + 55221635 55221675 41 GGTGAGGAGCCCAGCAGGTTCAGTCAGGGACCCACGCTCCG GGTGAGGAGCCCAGCAGGTTCAGTAAGGGACCCACGCTCCG < 41bp 0.497332123515729 0.818756585680622 0.08984339 0.21176407 prediction 0.637513171361244 Functional Gain - LILRP2 ENSG00000170858 ncRNA_intronic Human transcribed_processed_pseudogene chr19:55221655 chr19:55221659 . . 0 25 hm5C_associated_SNPs_100772 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0 1.77635683940025e-15 hm5C_site_53917 DeepMRMD:0;iRNA_m5C:1.77635683940025e-15 53918 chr10 134013895 134013895 1 + C A UCEC 134013891 + 134013871 134013911 41 TTTGGGGAGCCCATCACCGCCAGCCTGGGCACCGACGGTTC TTTGGGGAGCCCATCACCGCCAGCATGGGCACCGACGGTTC < 41bp 0.57754232143097 0.896289392105226 0.6476482 0.4527795 prediction 0.637494141348512 Functional Gain - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134013891 chr10:134013895 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_100773 0 0 0 0 1 Endoplasmic reticulum 0.500231643916887 0.500232567451247 0 1.84706871997342e-06 hm5C_site_53918 DeepMRMD:0;iRNA_m5C:1.84706871997342e-06 53919 chr19 36275213 36275213 1 + C A ACC 36275209 + 36275189 36275229 41 ACCTTCACCTCCGCCGGCCTCGACCCTGCAGGTATGCCCTC ACCTTCACCTCCGCCGGCCTCGACACTGCAGGTATGCCCTC < 41bp 0.438383338912774 0.818734987294941 0.15168026 0.34962958 prediction 0.637469974589882 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36275209 chr19:36275213 nonsynonymous SNV 0.981 1 25 hm5C_associated_SNPs_100774 0 0 0 0 1 chromatin 0.5002316694011 0.500231643875225 0 0 hm5C_site_53919 DeepMRMD:0;iRNA_m5C:0 53920 chr11 55587148 55587148 1 + C A LUAD 55587144 + 55587124 55587164 41 AATACAAGTGGGACCACGTTCACCCTCTTGGGCTTCTCAGA AATACAAGTGGGACCACGTTCACCATCTTGGGCTTCTCAGA < 41bp 0.545401490887 0.864135308217378 0.07421619 0.10828924 prediction 0.637467634660756 Functional Gain - OR5D18 ENSG00000186119 CDS Human protein_coding chr11:55587144 chr11:55587148 nonsynonymous SNV 0.063 1 25 hm5C_associated_SNPs_100775 0 0 0 0 0 unknown 0.500231643483633 0.500231621520259 0 0 hm5C_site_53920 DeepMRMD:0;iRNA_m5C:0 53921 chr19 5771061 5771061 1 + C A COAD 5771057 + 5771037 5771077 41 CCTCTCCTCGTCTACTATGACACCCTATGGAAGCCCGTGGT CCTCTCCTCGTCTACTATGACACCATATGGAAGCCCGTGGT < 41bp 0.408390316087227 0.81868288448485 0.17519867 0.33286336 prediction 0.6373657689697 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5771057 chr19:5771061 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_100776 0 0 0 0 1 nucleus 0.500231644418049 0.500231643986901 0 0 hm5C_site_53921 DeepMRMD:0;iRNA_m5C:0 53922 chr11 67191044 67191044 1 + C A KIRC 67191040 + 67191020 67191060 41 CTGGTGCTCACAGCCCTGCTCTGCCAGGAGCTAGGTCTGCC CTGGTGCTCACAGCCCTGCTCTGCAAGGAGCTAGGTCTGCC < 41bp 0.428639924742489 0.818657448960412 0.18004072 0.87296695 prediction 0.637314897920825 Functional Gain - CARNS1 ENSG00000172508 CDS Human protein_coding chr11:67191040 chr11:67191044 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_100777 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.7459339 0 hm5C_site_53922 DeepMRMD:0.7459339;iRNA_m5C:0 53923 chr7 142836664 142836664 1 + C A LUAD 142836660 + 142836640 142836680 41 GTTATTCGGGAATTAGGCATCTGCCCTGATGATGCTGCTGT GTTATTCGGGAATTAGGCATCTGCACTGATGATGCTGCTGT < 41bp 0.44130812790333 0.818624946319682 0.23954341 0.36144307 prediction 0.637249892639363 Functional Gain - PIP ENSG00000159763 CDS Human protein_coding chr7:142836660 chr7:142836664 nonsynonymous SNV 0.464 3 25 hm5C_associated_SNPs_100778 0 0 0 0 1 exosome 0.500231642964732 0.500231643927055 0 1.92464488790733e-09 hm5C_site_53923 DeepMRMD:0;iRNA_m5C:1.92464488790733e-09 53924 chr7 129396034 129396034 1 + C A rs80150480 129396030 + 129396010 129396050 41 AATCGTCCTAGACCAGGATACACCCGTGGGAGCAATTTTCT AATCGTCCTAGACCAGGATACACCAGTGGGAGCAATTTTCT < 41bp 0.453435230093688 0.818574432236924 0.008707523 0.029653788 prediction 0.637148864473848 Functional Gain - NRF1 ENSG00000106459 UTR3 Human protein_coding chr7:129396030 chr7:129396034 . . 0 25 hm5C_associated_SNPs_100779 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_53924 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 53925 chr16 2749829 2749829 1 + T G SKCM 2749826 + 2749806 2749846 41 CCCATTGTCCTTGCAGGTGCCTGTGAAGCATGTGTACCGTG CCCATTGTCCTTGCAGGTGCCTGGGAAGCATGTGTACCGTG < 41bp 0.449340248277302 0.818572277212025 0.06368801 0.890483 prediction 0.63714455442405 Functional Gain - KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2749826 chr16:2749829 nonsynonymous SNV 0.949 1 24 hm5C_associated_SNPs_100780 0 0 1 0 2 Ribosome 0.500231648376227 0.500231643918696 0.780966 0 hm5C_site_53925 DeepMRMD:0.780966;iRNA_m5C:0 53926 chr2 106471654 106471654 1 + C A CESC 106471650 + 106471630 106471670 41 GTGGTGGCGGGTGAGGAACGCGGCCAACAGGACGGGCTATG GTGGTGGCGGGTGAGGAACGCGGCAAACAGGACGGGCTATG < 41bp 0.571983409535761 0.890526221671378 0.8975551 0.8889431 prediction 0.637085624271234 Functional Gain - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106471650 chr2:106471654 synonymous SNV . 0 25 hm5C_associated_SNPs_100781 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921091 0 0 hm5C_site_53926 DeepMRMD:0;iRNA_m5C:0 53927 chr15 25479266 25479266 1 + C A LUSC 25479262 + 25479242 25479282 41 GGCCCCAGGCCAGTGTACGTCAGCCAGGTGCTCAGCCCATG GGCCCCAGGCCAGTGTACGTCAGCAAGGTGCTCAGCCCATG < 41bp 0.494766971778055 0.818537125305157 0.40083787 0.8027719 prediction 0.637074250610313 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25479262 chr15:25479266 . . 0 25 hm5C_associated_SNPs_100782 0 0 0 0 2 unknown 0.5002316658675 0.500231643702672 0.6055438 0 hm5C_site_53927 DeepMRMD:0.6055438;iRNA_m5C:0 53928 chr7 34118705 34118705 1 + C A HNSC 34118701 + 34118681 34118721 41 AGCCTGCAGCAGCACCTCACCGTGCGCTGGAACGGCTCGCG AGCCTGCAGCAGCACCTCACCGTGAGCTGGAACGGCTCGCG < 41bp 0.557995130016186 0.876507407146522 0.8213217 0.8895664 prediction 0.637024554260673 Functional Gain - BMPER ENSG00000164619 CDS Human protein_coding chr7:34118701 chr7:34118705 nonsynonymous SNV 0.980 2 25 hm5C_associated_SNPs_100783 0 0 0 0 1 exosome 0.50023163347511 0.500230382641525 0.1364894 0 hm5C_site_53928 DeepMRMD:0.1364894;iRNA_m5C:0 53929 chr11 76750707 76750707 1 + C A BLCA 76750703 + 76750683 76750723 41 TTCCTCCAGGCGCCAAGGTCCCCGCGGGAGGAGAGGTCCCC TTCCTCCAGGCGCCAAGGTCCCCGAGGGAGGAGAGGTCCCC < 41bp 0.462981689057569 0.818511068884938 0.60150844 0.58022374 prediction 0.637022137769876 Functional Gain - B3GNT6 ENSG00000198488 CDS Human protein_coding chr11:76750703 chr11:76750707 synonymous SNV . 0 25 hm5C_associated_SNPs_100784 0 0 0 0 0 exosome 0.500231643920963 0.500231643920202 0 0 hm5C_site_53929 DeepMRMD:0;iRNA_m5C:0 53930 chr1 152784988 152784988 1 + C A UCS 152784984 + 152784964 152785004 41 CAAGTGCATCCCCAAGTGCCCTCCCAAGTGCCTCACCCCTA CAAGTGCATCCCCAAGTGCCCTCCAAAGTGCCTCACCCCTA < 41bp 0.572085917177605 0.890596827578903 0.020337313 0.9410485 prediction 0.637021820802595 Functional Gain - LCE1B ENSG00000196734 CDS Human protein_coding chr1:152784984 chr1:152784988 synonymous SNV . 0 25 hm5C_associated_SNPs_100785 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.882097 0 hm5C_site_53930 DeepMRMD:0.882097;iRNA_m5C:0 53931 chr1 100613719 100613719 1 + T G LGG 100613716 + 100613696 100613736 41 GCCTTGGAGCAGTGGAATTCCATTATTTCCAGCGAATGAGT GCCTTGGAGCAGTGGAATTCCATGATTTCCAGCGAATGAGT < 41bp 0.479925077534161 0.818487458805462 0.14534047 0.13586706 prediction 0.636974917610925 Functional Gain - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100613716 chr1:100613719 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_100786 0 0 1 0 1 chromatin 0.500231648600054 0.501570512318053 0 0.00267772743599815 hm5C_site_53931 DeepMRMD:0;iRNA_m5C:0.00267772743599815 53932 chr16 56672584 56672584 1 + C A rs192677443 56672580 + 56672560 56672600 41 CGCTGGCTGCTGGGCCCTACCAAGCCTTCCACGTGCGCCTT CGCTGGCTGCTGGGCCCTACCAAGACTTCCACGTGCGCCTT < 41bp 0.529934849010654 0.848414771991469 0.38487834 0.6721021 prediction 0.636959845961628 Functional Gain - MT1A ENSG00000205362 UTR5 Human protein_coding chr16:56672580 chr16:56672584 . . 0 25 hm5C_associated_SNPs_100787 0 0 0 0 1 exosome 0.5002316438522 0.500231643921191 0.3442042 1.37982514303303e-10 hm5C_site_53932 DeepMRMD:0.3442042;iRNA_m5C:1.37982514303303e-10 53933 chr9 132630652 132630652 1 + C A UCEC 132630648 + 132630628 132630668 41 CGAGGACGCTGATGTGGACACTGCCATGGCTGCCCTTGACG CGAGGACGCTGATGTGGACACTGCAATGGCTGCCCTTGACG < 41bp 0.410730571529107 0.818478767249379 0.061741203 0.47986487 prediction 0.636957534498758 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132630648 chr9:132630652 synonymous SNV . 0 25 hm5C_associated_SNPs_100788 0 0 0 0 1 chromatin 0.500231643919012 0.500229720790648 0 0 hm5C_site_53933 DeepMRMD:0;iRNA_m5C:0 53934 chr2 109473334 109473334 1 + C A PAAD 109473330 + 109473310 109473350 41 AAACCTTGTTTTTGGAGTATCAGGCTGTTCCAGTAATATTA AAACCTTGTTTTTGGAGTATCAGGATGTTCCAGTAATATTA < 41bp 0.453143541776622 0.818469948076673 0.67277366 0.890408 prediction 0.636939896153346 Functional Gain - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109473330 chr2:109473334 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_100789 0 0 1 0 2 chromatin 0.500231626998935 0.50023164378346 0.43526868 3.35690504282837e-08 hm5C_site_53934 DeepMRMD:0.43526868;iRNA_m5C:3.35690504282837e-08 Gallstone disease 53935 chr15 85448875 85448875 1 + C A rs8187758 85448871 + 85448851 85448891 41 ATTGCGTTCGAGTGGCTGGGCGAGCAGATCCGGGTAGGTAT ATTGCGTTCGAGTGGCTGGGCGAGAAGATCCGGGTAGGTAT < 41bp 0.4437107639887 0.818442751050168 0.8931936 0.88061416 prediction 0.636885502100335 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85448871 chr15:85448875 nonsynonymous SNV 0.968 3 25 hm5C_associated_SNPs_100790 0 0 0 0 1 Endoplasmic reticulum 0.500231643923026 0.500231643942548 0 3.9042991062388e-11 hm5C_site_53935 DeepMRMD:0;iRNA_m5C:3.9042991062388e-11 53936 chr17 39383077 39383077 1 + T G SKCM 39383074 + 39383054 39383094 41 CCTTGCTGCCGCCCAACTTGCTGTCAAAACACCTGCTGTAG CCTTGCTGCCGCCCAACTTGCTGGCAAAACACCTGCTGTAG < 41bp 0.557335416282539 0.875776729115824 0.17881441 0.8506606 prediction 0.63688262566657 Functional Gain - KRTAP9-2 ENSG00000239886 CDS Human protein_coding chr17:39383074 chr17:39383077 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_100791 0 0 0 0 0 unknown 0.500231667964552 0.500231649063948 0.7013212 0 hm5C_site_53936 DeepMRMD:0.7013212;iRNA_m5C:0 53937 chr19 5456053 5456053 1 + T G SKCM 5456051 + 5456031 5456071 41 CGCGCCGGCTTCGAGGCGGCCATCGTGCACAACGTCCACTC CGCGCCGGCTTCGAGGCGGCCAGCGTGCACAACGTCCACTC < 41bp 0.491422884947466 0.81843108027038 0.3017323 0.5017278 prediction 0.636862160540761 Functional Gain - ZNRF4 ENSG00000105428 CDS Human protein_coding chr19:5456051 chr19:5456053 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_100792 0 0 0 0 0 unknown 0.500211644037845 0.500231643914408 0.00345559999999989 3.9999753124853e-05 hm5C_site_53937 DeepMRMD:0.00345559999999989;iRNA_m5C:3.9999753124853e-05 53938 chr19 35531149 35531149 1 + C A rs72550263 35531145 + 35531125 35531165 41 GGGCAGGGGGTTCTGGGACCCACTCCGACTCCCCCTCCCCG GGGCAGGGGGTTCTGGGACCCACTACGACTCCCCCTCCCCG < 41bp 0.491451529402254 0.818408892887366 0.043197036 0.21977732 prediction 0.636817785774731 Functional Gain - SCN1B ENSG00000105711 UTR3 Human protein_coding chr19:35531145 chr19:35531149 . . 0 25 hm5C_associated_SNPs_100793 0 0 0 0 0 exosome 0.500231643921675 0.500231643921092 0 0 hm5C_site_53938 DeepMRMD:0;iRNA_m5C:0 53939 chr2 45169823 45169823 1 + C A LUSC 45169819 + 45169799 45169839 41 GGCCCGGTGGACAAGTACCGCGTGCGCAAGAAGTTCCCGCT GGCCCGGTGGACAAGTACCGCGTGAGCAAGAAGTTCCCGCT < 41bp 0.461736378739711 0.818378855088419 0.33894455 0.2407229 prediction 0.636757710176839 Functional Gain - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45169819 chr2:45169823 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100794 0 0 0 0 0 exosome 0.499900332405131 0.500231625064676 0 0.000463250129352 hm5C_site_53939 DeepMRMD:0;iRNA_m5C:0.000463250129352 53940 chr17 76168358 76168358 1 + C A rs576110898 76168354 + 76168334 76168374 41 CTGACAAGTGCCTCAGCTTCCCCCCGGCCCGGGTCAGGCCG CTGACAAGTGCCTCAGCTTCCCCCAGGCCCGGGTCAGGCCG < 41bp 0.453233233507585 0.81837537738764 0.29366943 0.49013394 prediction 0.636750754775279 Functional Gain - SYNGR2 ENSG00000108639 UTR3 Human protein_coding chr17:76168354 chr17:76168358 . . 0 25 hm5C_associated_SNPs_100795 0 0 1 0 0 Ribosome 0.500231643921154 0.50023164364284 0 0 hm5C_site_53940 DeepMRMD:0;iRNA_m5C:0 53941 chr1 57320621 57320621 1 + C A UCEC 57320617 + 57320597 57320637 41 TCTTGTCTTTGATGACTTGTCAGCCTGGGGTAACTGCACAG TCTTGTCTTTGATGACTTGTCAGCATGGGGTAACTGCACAG < 41bp 0.552789265482919 0.87113462963769 0.06822571 0.16222453 prediction 0.636690728309541 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57320617 chr1:57320621 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_100796 0 0 0 0 1 cytosol 0.500231643849068 0.500231634927458 0 0 hm5C_site_53941 DeepMRMD:0;iRNA_m5C:0 53942 chr4 15004941 15004941 1 + C A rs528645772 15004937 + 15004917 15004957 41 GGTTCAGCCCGCCGCCGCCGCCAGCCGGCCCGCTCCTCCAG GGTTCAGCCCGCCGCCGCCGCCAGACGGCCCGCTCCTCCAG < 41bp 0.471722145628332 0.818344959382861 0.8466803 0.92790794 prediction 0.636689918765722 Functional Gain - CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15004937 chr4:15004941 nonsynonymous SNV 0.872 1 25 hm5C_associated_SNPs_100797 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.16245528 0 hm5C_site_53942 DeepMRMD:0.16245528;iRNA_m5C:0 53943 chr3 43744063 43744063 1 + C A UCEC 43744059 + 43744039 43744079 41 GGATTCTTGGCTGCTGCTTACTCGCTGAAGTACCCATCAAG GGATTCTTGGCTGCTGCTTACTCGATGAAGTACCCATCAAG < 41bp 0.570751496789135 0.889043016498284 0.086345226 0.54868364 prediction 0.636583039418297 Functional Gain - ABHD5 ENSG00000011198 CDS Human protein_coding chr3:43744059 chr3:43744063 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_100798 0 0 1 0 1 Ribosome 0.500231643921094 0.500231643921092 0.0973672800000001 0 hm5C_site_53943 DeepMRMD:0.0973672800000001;iRNA_m5C:0 53944 chr1 7887365 7887365 1 + C A LGG 7887361 + 7887341 7887381 41 CTCTCCGCACACCTCGAGCCCGACCTTCCCACCTGCCGCCA CTCTCCGCACACCTCGAGCCCGACATTCCCACCTGCCGCCA < 41bp 0.434150008556397 0.81829044220483 0.037836432 0.06462464 prediction 0.636580884409661 Functional Gain - PER3 ENSG00000049246 CDS Human protein_coding chr1:7887361 chr1:7887365 synonymous SNV . 0 25 hm5C_associated_SNPs_100799 0 0 0 0 0 chromatin 0.50023164392109 0.500231643921092 0 3.99680288865056e-15 hm5C_site_53944 DeepMRMD:0;iRNA_m5C:3.99680288865056e-15 53945 chr17 56247778 56247778 1 + C A PRAD 56247774 + 56247754 56247794 41 GGTTTCCATGATCTTCGTTCCAAGCATTTACCTCTATGCCC GGTTTCCATGATCTTCGTTCCAAGAATTTACCTCTATGCCC < 41bp 0.545935756854992 0.864193078804538 0.05549112 0.13802636 prediction 0.636514643899093 Functional Gain - OR4D2 ENSG00000255713 CDS Human protein_coding chr17:56247774 chr17:56247778 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100800 0 0 0 0 0 unknown 0.500231644011713 0.500231643934155 0 0 hm5C_site_53945 DeepMRMD:0;iRNA_m5C:0 53946 chr6 144507849 144507849 1 + C A BRCA 144507845 + 144507825 144507865 41 GACGGGGACGATGAGTTTGACTCGCCCCACGAGGACATCGT GACGGGGACGATGAGTTTGACTCGACCCACGAGGACATCGT < 41bp 0.553039042263751 0.871292852364982 0.1728018 0.368962 prediction 0.636507620202462 Functional Gain - STX11 ENSG00000135604 CDS Human protein_coding chr6:144507845 chr6:144507849 nonsynonymous SNV 0.067 0 25 hm5C_associated_SNPs_100801 0 0 0 0 1 Nucleus 0.500231178620122 0.50023163527759 0 9.13314935013787e-07 hm5C_site_53946 DeepMRMD:0;iRNA_m5C:9.13314935013787e-07 53947 chr5 148206648 148206648 1 + C A STAD 148206644 + 148206624 148206664 41 GTGCTGATCTGGTCATGGGCCTGGCAGTGGTGCCCTTTGGG GTGCTGATCTGGTCATGGGCCTGGAAGTGGTGCCCTTTGGG < 41bp 0.44820410516767 0.8182429532184 0.18266976 0.2151711 prediction 0.6364859064368 Functional Gain - ADRB2 ENSG00000169252 CDS Human protein_coding chr5:148206644 chr5:148206648 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_100802 0 0 0 0 0 Cytoplasm 0.500231643923389 0.500231643921092 0 0 hm5C_site_53947 DeepMRMD:0;iRNA_m5C:0 53948 chr1 206230897 206230897 1 + C A LIHC 206230893 + 206230873 206230913 41 TGGATCTACATGGGCTTCAACAGCCACCTGTTACCGCGGCC TGGATCTACATGGGCTTCAACAGCAACCTGTTACCGCGGCC < 41bp 0.448640679873885 0.818234437905924 0.20183685 0.1107609 prediction 0.636468875811847 Functional Gain - AVPR1B ENSG00000198049 CDS Human protein_coding chr1:206230893 chr1:206230897 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_100803 0 0 0 0 1 unknown 0.50023164392109 0.500231643921093 0 4.44089209850063e-15 hm5C_site_53948 DeepMRMD:0;iRNA_m5C:4.44089209850063e-15 53949 chr7 36320746 36320746 1 + C A UCEC 36320742 + 36320722 36320762 41 AGTTCTGCACGGAGCTAAACCAGCCGACCCTGCCCAACATC AGTTCTGCACGGAGCTAAACCAGCAGACCCTGCCCAACATC < 41bp 0.574979930109207 0.893200592480506 0.7516593 0.42909625 prediction 0.636441324742597 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36320742 chr7:36320746 nonsynonymous SNV 0.977 5 25 hm5C_associated_SNPs_100804 0 0 0 0 2 cytosol 0.500231643909546 0.500231643917709 0 1.63249413986932e-11 hm5C_site_53949 DeepMRMD:0;iRNA_m5C:1.63249413986932e-11 53950 chr16 3106003 3106003 1 + T G rs55999592 3106000 + 3105980 3106020 41 CGGGTGCTGGGGCCGGCAGGCTGTGTTCTGAGAGTGCCTGC CGGGTGCTGGGGCCGGCAGGCTGGGTTCTGAGAGTGCCTGC < 41bp 0.455893856323851 0.81820866874379 0.27957755 0.88945556 prediction 0.636417337487579 Functional Gain - MMP25-AS1 ENSG00000261971 ncRNA_exonic Human antisense chr16:3106000 chr16:3106003 . . 0 24 hm5C_associated_SNPs_100805 0 0 0 0 0 unknown 0.500231643877913 0.500231643921094 0.77891112 8.63624727287515e-11 hm5C_site_53950 DeepMRMD:0.77891112;iRNA_m5C:8.63624727287515e-11 53951 chr1 12144606 12144606 1 + T G UCEC 12144604 + 12144584 12144624 41 AGGTGCTGTTACCGCTGCCCCATGGGTGAGTGGGGGCGTTG AGGTGCTGTTACCGCTGCCCCAGGGGTGAGTGGGGGCGTTG < 41bp 0.500896340574803 0.819092677007075 0.2774794 0.8982111 prediction 0.636392672864543 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12144604 chr1:12144606 nonsynonymous SNV 0.008 2 23 hm5C_associated_SNPs_100806 0 0 0 0 2 Endoplasmic reticulum 0.500232429140575 0.500231643921252 0.7964222 0 hm5C_site_53951 DeepMRMD:0.7964222;iRNA_m5C:0 53952 chr17 6023850 6023850 1 + C A LUAD 6023846 + 6023826 6023866 41 GAGGGCAGCTTCCGGCGGCGCGGCCGGCGCTCCCACGACCC GAGGGCAGCTTCCGGCGGCGCGGCAGGCGCTCCCACGACCC < 41bp 0.557170378785586 0.875351764757294 0.9077867 0.9062409 prediction 0.636362771943416 Functional Gain - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6023846 chr17:6023850 synonymous SNV . 0 25 hm5C_associated_SNPs_100807 0 0 1 0 0 exosome 0.500231643921146 0.500231643921657 0 1.02184927186499e-12 hm5C_site_53952 DeepMRMD:0;iRNA_m5C:1.02184927186499e-12 53953 chr16 2203418 2203418 1 + C A STAD 2203414 + 2203394 2203434 41 GTCGAGGGGCCTCCTGCTGCCGCCCTTGAACCTGGCTGAGC GTCGAGGGGCCTCCTGCTGCCGCCATTGAACCTGGCTGAGC < 41bp 0.557485084271088 0.875666304369142 0.12691283 0.8084557 prediction 0.636362440196108 Functional Gain - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2203414 chr16:2203418 nonsynonymous SNV 0.196 1 25 hm5C_associated_SNPs_100808 0 0 0 0 1 chromatin 0.500231643921085 0.500231643921054 0.6169114 0 hm5C_site_53953 DeepMRMD:0.6169114;iRNA_m5C:0 53954 chr7 43827557 43827557 1 + C A GBM 43827553 + 43827533 43827573 41 GGTGTTGGCCGAGCCGGCTCCGTGCGGATGAGGGACTTGCG GGTGTTGGCCGAGCCGGCTCCGTGAGGATGAGGGACTTGCG < 41bp 0.435551425310073 0.818161563035925 0.35133642 0.7748252 prediction 0.63632312607185 Functional Gain - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43827553 chr7:43827557 synonymous SNV . 0 25 hm5C_associated_SNPs_100809 0 0 1 0 2 Ribosome 0.500231644067301 0.500231647780913 0.5496504 7.42722394697637e-09 hm5C_site_53954 DeepMRMD:0.5496504;iRNA_m5C:7.42722394697637e-09 53955 chr22 27068482 27068482 1 + T G rs9620624 27068479 + 27068459 27068499 41 GTAGGTGGGACCAGGGAAATCTCTGGGACGTGAGTGTGGAG GTAGGTGGGACCAGGGAAATCTCGGGGACGTGAGTGTGGAG < 41bp 0.485780224648377 0.818093872310899 0.6696743 0.8557749 prediction 0.636187744621797 Functional Gain - MIAT ENSG00000206028;ENSG00000225783 ncRNA_exonic Human other chr22:27068479 chr22:27068482 . . 0 24 hm5C_associated_SNPs_100810 0 0 1 0 0 unknown 0.500231643921743 0.500231643913224 0.3722012 0 hm5C_site_53955 DeepMRMD:0.3722012;iRNA_m5C:0 53956 chr9 120475549 120475549 1 + T G SKCM 120475546 + 120475526 120475566 41 AGCCTTGAGTTTCTAGATCTCAGTAGAAATGGCTTGAGTTT AGCCTTGAGTTTCTAGATCTCAGGAGAAATGGCTTGAGTTT < 41bp 0.541499688756747 0.859575400912959 0.7073312 0.94359386 prediction 0.636151424312424 Functional Gain - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120475546 chr9:120475549 nonsynonymous SNV 0.999 3 24 hm5C_associated_SNPs_100811 0 0 0 0 0 cytosol 0.500231332179975 0.500231491978949 0.47252532 3.1959794810632e-07 hm5C_site_53956 DeepMRMD:0.47252532;iRNA_m5C:3.1959794810632e-07 53957 chr5 85578647 85578647 1 + C A LUSC 85578643 + 85578623 85578663 41 GAGATGAACATCCTAGAAATCAACCAGGAATTGCGCTCCCA GAGATGAACATCCTAGAAATCAACAAGGAATTGCGCTCCCA < 41bp 0.481921032432789 0.818070712521781 0.1624729 0.19462216 prediction 0.636141425043561 Functional Gain - NBPF22P ENSG00000205449 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:85578643 chr5:85578647 . . 0 25 hm5C_associated_SNPs_100812 0 0 0 0 0 unknown 0.500231636037907 0.500231643916703 0 1.57575932302478e-08 hm5C_site_53957 DeepMRMD:0;iRNA_m5C:1.57575932302478e-08 53958 chr10 50819629 50819629 1 + C A HNSC 50819625 + 50819605 50819645 41 GGCCAACCTGCCAGTGGGCACTCCCATCCACCGCCTCATGC GGCCAACCTGCCAGTGGGCACTCCAATCCACCGCCTCATGC < 41bp 0.436022600937943 0.818067054484986 0.061782807 0.96479845 prediction 0.636134108969972 Functional Gain - SLC18A3 ENSG00000187714 CDS Human protein_coding chr10:50819625 chr10:50819629 synonymous SNV . 0 25 hm5C_associated_SNPs_100813 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.9295969 0 hm5C_site_53958 DeepMRMD:0.9295969;iRNA_m5C:0 53959 chr2 131487117 131487117 1 + C A UCEC 131487113 + 131487093 131487133 41 TCTCACTGATGCTGTCTTCGCCGCCTGCACCAGCACCATCC TCTCACTGATGCTGTCTTCGCCGCATGCACCAGCACCATCC < 41bp 0.546896724123719 0.864925171626941 0.48052892 0.8356544 prediction 0.636056895006443 Functional Gain - GPR148 ENSG00000173302 CDS Human protein_coding chr2:131487113 chr2:131487117 synonymous SNV . 0 25 hm5C_associated_SNPs_100814 0 0 0 0 0 unknown 0.500231647502137 0.500231663853912 0.6713088 3.27035507563522e-08 hm5C_site_53959 DeepMRMD:0.6713088;iRNA_m5C:3.27035507563522e-08 53960 chr16 1605163 1605163 1 + C A rs9922661 1605159 + 1605139 1605179 41 AGTCTGGGTGACCTCTGCGCCATGCGTGCGAGACACGTGTG AGTCTGGGTGACCTCTGCGCCATGAGTGCGAGACACGTGTG < 41bp 0.467633526942656 0.818016885004807 0.21885756 0.16262949 prediction 0.636033770009613 Functional Gain - TMEM204 ENSG00000131634 UTR3 Human protein_coding chr16:1605159 chr16:1605163 . . 0 25 hm5C_associated_SNPs_100815 0 0 0 2 0 nucleolus 0.500218583557886 0.500228971085749 0 2.07750557255082e-05 hm5C_site_53960 DeepMRMD:0;iRNA_m5C:2.07750557255082e-05 53961 chr11 75438535 75438535 1 + C A LUAD 75438531 + 75438511 75438551 41 GGAACTACATTGCGGGCTTCCACCCCCATGGAGTCCTGGCA GGAACTACATTGCGGGCTTCCACCACCATGGAGTCCTGGCA < 41bp 0.403750882492869 0.818011734401513 0.19875827 0.517246 prediction 0.636023468803027 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75438531 chr11:75438535 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_100816 0 0 1 0 1 exosome 0.500231643921092 0.500231661378368 0.034492 3.49145503619752e-08 hm5C_site_53961 DeepMRMD:0.034492;iRNA_m5C:3.49145503619752e-08 53962 chr19 54609303 54609303 1 + C A rs587640804 54609299 + 54609279 54609319 41 TCCGTCATGATCAACAAGGCCACGCCCTACAACTACCCAGG TCCGTCATGATCAACAAGGCCACGACCTACAACTACCCAGG < 41bp 0.439882687438357 0.818003545263203 0.043355674 0.023346305 prediction 0.636007090526407 Functional Gain - NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609299 chr19:54609303 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_100817 0 0 1 0 2 Ribosome 0.500231644300628 0.500231643921092 0 0 hm5C_site_53962 DeepMRMD:0;iRNA_m5C:0 53963 chr20 9495539 9495539 1 + C A LUSC 9495535 + 9495515 9495555 41 AGAGGGGTCCCCAGCATCGACAGACTTCGAGTTCTCCTGAT AGAGGGGTCCCCAGCATCGACAGAATTCGAGTTCTCCTGAT < 41bp 0.555198509938048 0.873199009277727 0.48398176 0.41903043 prediction 0.63600099867936 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9495535 chr20:9495539 nonsynonymous SNV 0.918 1 25 hm5C_associated_SNPs_100818 0 0 0 0 1 exosome 0.500231643920598 0.500231643921269 0 1.34225963677181e-12 hm5C_site_53963 DeepMRMD:0;iRNA_m5C:1.34225963677181e-12 53964 chr5 140627157 140627157 1 + C A PAAD 140627153 + 140627133 140627173 41 GTGGACGGCTTCTCTCAGCCCTACCTGCCGCTCCCAGAGGC GTGGACGGCTTCTCTCAGCCCTACATGCCGCTCCCAGAGGC < 41bp 0.446115008897846 0.817990601972101 0.066945255 0.22580105 prediction 0.635981203944202 Functional Gain - PCDHB15 ENSG00000113248 CDS Human protein_coding chr5:140627153 chr5:140627157 nonsynonymous SNV 0.937 2 25 hm5C_associated_SNPs_100819 0 0 1 0 0 exosome 0.500231643921093 0.500231643885401 0 0 hm5C_site_53964 DeepMRMD:0;iRNA_m5C:0 53965 chr4 90034415 90034415 1 + T G SKCM 90034412 + 90034392 90034432 41 ACAGAAAACAGATGGGATTCCAGTGTCCGGAACGATTTGTG ACAGAAAACAGATGGGATTCCAGGGTCCGGAACGATTTGTG < 41bp 0.471112331636141 0.817883614311625 0.23842454 0.8473131 prediction 0.63576722862325 Functional Gain - TIGD2 ENSG00000180346 CDS Human protein_coding chr4:90034412 chr4:90034415 nonsynonymous SNV 0.663 3 24 hm5C_associated_SNPs_100820 0 0 0 0 0 Cytosol 0.500231643921527 0.500231643921079 0.6946262 0 hm5C_site_53965 DeepMRMD:0.6946262;iRNA_m5C:0 53966 chr1 13936974 13936974 1 + C A rs34384359 13936970 + 13936950 13936990 41 CCACGCGCAAGAACAAAGTCCAAGCGCCACAGCCTCAAACG CCACGCGCAAGAACAAAGTCCAAGAGCCACAGCCTCAAACG < 41bp 0.440609440062303 0.81788097907813 0.2814971 0.29060116 prediction 0.635761958156261 Functional Gain - PDPN ENSG00000162493 CDS Human protein_coding chr1:13936970 chr1:13936974 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_100821 0 0 0 0 2 Ribosome 0.500231149026246 0.500231665190995 0 1.03232949921761e-06 hm5C_site_53966 DeepMRMD:0;iRNA_m5C:1.03232949921761e-06 53967 chr20 30380588 30380588 1 + C A UCEC 30380584 + 30380564 30380604 41 AATCACCGTCCCCAAGTCACCAGCCTTTGCATTGAAGAACA AATCACCGTCCCCAAGTCACCAGCATTTGCATTGAAGAACA < 41bp 0.421562913116167 0.817874289499044 0.049752295 0.03510043 prediction 0.635748578998088 Functional Gain - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30380584 chr20:30380588 synonymous SNV . 0 25 hm5C_associated_SNPs_100822 0 0 1 0 1 Cytosol 0.500231641238296 0.500232287414833 0 1.2923530732234e-06 hm5C_site_53967 DeepMRMD:0;iRNA_m5C:1.2923530732234e-06 53968 chr6 143792727 143792727 1 + C A UCEC 143792723 + 143792703 143792743 41 AATTGATCACTGTCATTAAACAAGCTGTGCAGAAGGTTTTA AATTGATCACTGTCATTAAACAAGATGTGCAGAAGGTTTTA < 41bp 0.44821555970058 0.817862820762054 0.4379071 0.4218928 prediction 0.635725641524107 Functional Gain - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143792723 chr6:143792727 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100823 0 0 1 0 2 chromatin 0.500231797136574 0.50023180391701 0 1.35608728690784e-08 hm5C_site_53968 DeepMRMD:0;iRNA_m5C:1.35608728690784e-08 53969 chr1 111442176 111442176 1 + C A rs113959563 111442172 + 111442152 111442192 41 CCCATTGTCGAATTAGTCTCCAGCCTCTAAATAATGCCCAG CCCATTGTCGAATTAGTCTCCAGCATCTAAATAATGCCCAG < 41bp 0.52093431726883 0.838784620162859 0.09551832 0.04319504 prediction 0.635700605788059 Functional Gain - CD53 ENSG00000143119 UTR3 Human protein_coding chr1:111442172 chr1:111442176 . . 0 25 hm5C_associated_SNPs_100824 0 0 1 1 0 Endoplasmic reticulum 0.500231643921226 0.500231643921093 0 0 hm5C_site_53969 DeepMRMD:0;iRNA_m5C:0 53970 chr18 23713962 23713962 1 + C A LUAD 23713958 + 23713938 23713978 41 TCGATATGACAGGGCGATCACTGTCTTCTCCCCAGACGGAC TCGATATGACAGGGCGATCACTGTATTCTCCCCAGACGGAC < 41bp 0.496416464299371 0.81782985296297 0.058333337 0.14388096 prediction 0.635659705925939 Functional Gain - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23713958 chr18:23713962 synonymous SNV . 0 25 hm5C_associated_SNPs_100825 0 0 0 0 1 membrane 0.500231643921076 0.500231643922257 0 2.36144437337771e-12 hm5C_site_53970 DeepMRMD:0;iRNA_m5C:2.36144437337771e-12 53971 chr1 159176168 159176168 1 + C A LUSC 159176164 + 159176144 159176184 41 CCTATTCTGCCACCAGGCCACCCGCACCCTCTTGCCCTCTC CCTATTCTGCCACCAGGCCACCCGAACCCTCTTGCCCTCTC < 41bp 0.4417820567019 0.817808342419275 0.20492038 0.39615113 prediction 0.635616684838551 Functional Gain - ACKR1 ENSG00000213088 CDS Human protein_coding chr1:159176164 chr1:159176168 synonymous SNV . 0 25 hm5C_associated_SNPs_100826 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_53971 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 53972 chr1 154298114 154298114 1 + C A rs552544847 154298110 + 154298090 154298130 41 TGGGGAGCCGAGCCGAGCGCCCCCCGCCCCAGCCCCCGGCA TGGGGAGCCGAGCCGAGCGCCCCCAGCCCCAGCCCCCGGCA < 41bp 0.528704543255404 0.846512500159134 0.28332227 0.29802823 prediction 0.635615913807461 Functional Gain - ATP8B2 ENSG00000143515 UTR5 Human protein_coding chr1:154298110 chr1:154298114 . . 0 25 hm5C_associated_SNPs_100827 0 0 1 0 1 chromatin 0.500231643877231 0.50023164511075 0 2.46703835138362e-09 hm5C_site_53972 DeepMRMD:0;iRNA_m5C:2.46703835138362e-09 53973 chr17 46134420 46134420 1 + C A UCEC 46134416 + 46134396 46134436 41 GCCTAGTGGGGAGGACCAGACGGCCCTGTCCCTGGAAGAGT GCCTAGTGGGGAGGACCAGACGGCACTGTCCCTGGAAGAGT < 41bp 0.431966577081533 0.81779545439124 0.5663524 0.515971 prediction 0.635590908782479 Functional Gain - NFE2L1 ENSG00000082641 CDS Human protein_coding chr17:46134416 chr17:46134420 synonymous SNV . 0 25 hm5C_associated_SNPs_100828 0 0 1 0 2 Ribosome 0.500231643919743 0.500231129800678 0 0 hm5C_site_53973 DeepMRMD:0;iRNA_m5C:0 53974 chr11 34074072 34074072 1 + C A rs370335951 34074068 + 34074048 34074088 41 GGCGGCCGCGGGAGCCGGGGCCGCCGCGCCGGCTTCTCAGC GGCGGCCGCGGGAGCCGGGGCCGCAGCGCCGGCTTCTCAGC < 41bp 0.45370583559236 0.817777599715558 0.8428898 0.8748448 prediction 0.635555199431116 Functional Gain - CAPRIN1 ENSG00000135387 CDS Human protein_coding chr11:34074068 chr11:34074072 synonymous SNV . 0 25 hm5C_associated_SNPs_100829 0 0 1 0 0 Cytosol 0.500231643921929 0.500231666017126 0.0639099999999999 4.41903957870693e-08 hm5C_site_53974 DeepMRMD:0.0639099999999999;iRNA_m5C:4.41903957870693e-08 53975 chr3 10967702 10967702 1 + C A LIHC 10967698 + 10967678 10967718 41 CCCTCGCTCCAGGCCCCGGCCTGGCCTTTATTGCGTACCCC CCCTCGCTCCAGGCCCCGGCCTGGACTTTATTGCGTACCCC < 41bp 0.449621016250774 0.817777488705418 0.26616102 0.44937265 prediction 0.635554977410836 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10967698 chr3:10967702 nonsynonymous SNV 0.723 4 25 hm5C_associated_SNPs_100830 0 0 1 0 1 cytosol 0.500231643787143 0.500231643921092 0 2.67899258332704e-10 hm5C_site_53975 DeepMRMD:0;iRNA_m5C:2.67899258332704e-10 53976 chrX 102885150 102885150 1 + T G UCEC 102885147 + 102885127 102885167 41 CATAAGCTTGAAGAAGGAAGCTTTAAAGAAAGGTTGGCTCG CATAAGCTTGAAGAAGGAAGCTTGAAAGAAAGGTTGGCTCG < 41bp 0.470318625211034 0.817766451046167 0.1258375 0.11946517 prediction 0.635532902092335 Functional Gain - TCEAL1 ENSG00000172465 CDS Human protein_coding chrX:102885147 chrX:102885150 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_100831 0 0 1 0 0 Cytosol 0.500231643921081 0.50023161218611 0 0 hm5C_site_53976 DeepMRMD:0;iRNA_m5C:0 53977 chr5 161277843 161277843 1 + C A rs113886269 161277839 + 161277819 161277859 41 GAGGAAAAGTCCAGGTCTGTCTGACTGTCTTTGGGCCTGGA GAGGAAAAGTCCAGGTCTGTCTGAATGTCTTTGGGCCTGGA < 41bp 0.566996028260035 0.884756585044103 0.14446515 0.19469425 prediction 0.635521113568136 Functional Gain - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161277839 chr5:161277843 nonsynonymous SNV 0.987 0 25 hm5C_associated_SNPs_100832 1 0 0 0 2 unknown 0.500231643921459 0.500231643921098 0 0 hm5C_site_53977 DeepMRMD:0;iRNA_m5C:0 not specified not specified 53978 chr22 21988758 21988758 1 + C A LUSC 21988754 + 21988734 21988774 41 GCCGGCTGTCTGGGCTCCCACAGCCGGGACAGTGACCTAGG GCCGGCTGTCTGGGCTCCCACAGCAGGGACAGTGACCTAGG < 41bp 0.569471830671017 0.887165985909297 0.32160535 0.40131038 prediction 0.635388310476561 Functional Gain - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21988754 chr22:21988758 synonymous SNV . 0 25 hm5C_associated_SNPs_100833 0 0 0 0 0 nucleolus 0.500231643917245 0.500231643921092 0 7.69584396209666e-12 hm5C_site_53978 DeepMRMD:0;iRNA_m5C:7.69584396209666e-12 53979 chr14 24538031 24538031 1 + C A LUAD 24538027 + 24538007 24538047 41 GCTCTAGCTCCATGGCCTCCCAAGCCAGTGGCTGTGCCCAG GCTCTAGCTCCATGGCCTCCCAAGACAGTGGCTGTGCCCAG < 41bp 0.446067016962226 0.817680247207652 0.22574452 0.17825037 prediction 0.635360494415304 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24538027 chr14:24538031 nonsynonymous SNV 0.958 3 25 hm5C_associated_SNPs_100834 0 0 0 0 1 Endoplasmic reticulum 0.500231643920004 0.500231643921696 0 3.38484795747718e-12 hm5C_site_53979 DeepMRMD:0;iRNA_m5C:3.38484795747718e-12 53980 chr11 77920809 77920809 1 + C A rs77171344 77920805 + 77920785 77920825 41 ACCAACCAGTGCACAGGGGCCAGGCAGGGTGGGTCCTCGGA ACCAACCAGTGCACAGGGGCCAGGAAGGGTGGGTCCTCGGA < 41bp 0.4310360999567 0.817670308368004 0.5111586 0.64800787 prediction 0.635340616736008 Functional Gain - USP35 ENSG00000118369 CDS Human protein_coding chr11:77920805 chr11:77920809 synonymous SNV . 0 25 hm5C_associated_SNPs_100835 0 0 0 0 0 nucleolus 0.500231628616056 0.500231644330891 0.27369854 3.14296704218009e-08 hm5C_site_53980 DeepMRMD:0.27369854;iRNA_m5C:3.14296704218009e-08 53981 chr15 79044487 79044487 1 + C A rs139813293 79044483 + 79044463 79044503 41 TGTGTTAAAAGGAGCCCACGCAGCCGACAGCAGCAGGAGCA TGTGTTAAAAGGAGCCCACGCAGCAGACAGCAGCAGGAGCA < 41bp 0.487817856083799 0.8176698914359 0.49108425 0.7120275 prediction 0.6353397828718 Functional Gain - LOC646938 ENSG00000238166 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:79044483 chr15:79044487 . . 0 25 hm5C_associated_SNPs_100836 0 0 0 1 1 unknown 0.500231643921092 0.500214626225667 0.424055 0 hm5C_site_53981 DeepMRMD:0.424055;iRNA_m5C:0 53982 chr12 1943615 1943615 1 + C A LUSC 1943611 + 1943591 1943631 41 AGTCCAGAGCCTGCTAAGCCCAAGCCCGGGGCTGAGCCGGA AGTCCAGAGCCTGCTAAGCCCAAGACCGGGGCTGAGCCGGA < 41bp 0.552282636568606 0.869905754573106 0.15244126 0.17500123 prediction 0.635246236009 Functional Gain - LRTM2 ENSG00000166159 CDS Human protein_coding chr12:1943611 chr12:1943615 nonsynonymous SNV 0.733 1 25 hm5C_associated_SNPs_100837 0 0 0 0 0 exosome 0.500231643934912 0.500231643923757 0 0 hm5C_site_53982 DeepMRMD:0;iRNA_m5C:0 53983 chr4 120107244 120107244 1 + C A LIHC 120107240 + 120107220 120107260 41 GTCCTTTGTCAATCCCCTTTCTGGCAGACGGTCCTTTAATA GTCCTTTGTCAATCCCCTTTCTGGAAGACGGTCCTTTAATA < 41bp 0.556685139616244 0.874291246456449 0.21327898 0.29611266 prediction 0.63521221368041 Functional Gain - MYOZ2 ENSG00000172399 CDS Human protein_coding chr4:120107240 chr4:120107244 synonymous SNV . 0 25 hm5C_associated_SNPs_100838 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_53983 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 53984 chr10 112257644 112257644 1 + T G rs549120669 112257641 + 112257621 112257661 41 CGGCACTCATTCACATAAAACGCTGCGCGGCCGGCGGAATC CGGCACTCATTCACATAAAACGCGGCGCGGCCGGCGGAATC < 41bp 0.538620110489322 0.856225615684384 0.43142316 0.8446237 prediction 0.635211010390124 Functional Gain - DUSP5 ENSG00000138166 UTR5 Human protein_coding chr10:112257641 chr10:112257644 . . 0 24 hm5C_associated_SNPs_100839 0 0 0 0 0 Cytosol 0.500246387624313 0.500231642140689 0.6892474 0 hm5C_site_53984 DeepMRMD:0.6892474;iRNA_m5C:0 53985 chr4 123301233 123301233 1 + C A LGG 123301229 + 123301209 123301249 41 ACCTCTAGGTGAGAAAATGGCTAGCAACAATCATTGGTTTC ACCTCTAGGTGAGAAAATGGCTAGAAACAATCATTGGTTTC < 41bp 0.43796484944921 0.817593103147096 0.14249441 0.14495966 prediction 0.635186206294192 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123301229 chr4:123301233 nonsynonymous SNV 0.982 0 25 hm5C_associated_SNPs_100840 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_53985 DeepMRMD:0;iRNA_m5C:0 53986 chr16 2871543 2871543 1 + C A rs536996341 2871539 + 2871519 2871559 41 CCAGAGTGGCATGTCCCAGCCAGACCCCTCCTGGCCGCTAC CCAGAGTGGCATGTCCCAGCCAGAACCCTCCTGGCCGCTAC < 41bp 0.547580880890929 0.865107866887132 0.25393122 0.23877397 prediction 0.635053971992406 Functional Gain - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2871539 chr16:2871543 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_100841 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_53986 DeepMRMD:0;iRNA_m5C:0 53987 chr19 16436566 16436566 1 + C A rs375247255 16436562 + 16436542 16436582 41 CGGTGGCCCTGGTTTCGGCGCGCCCGGGCCCGGCCTGCATT CGGTGGCCCTGGTTTCGGCGCGCCAGGGCCCGGCCTGCATT < 41bp 0.44985862541874 0.817513015094069 0.18017298 0.39672935 prediction 0.635026030188139 Functional Gain - KLF2 ENSG00000127528 CDS Human protein_coding chr19:16436562 chr19:16436566 synonymous SNV . 0 25 hm5C_associated_SNPs_100842 0 0 1 0 0 Endoplasmic reticulum 0.500231643315254 0.500231643839359 0 1.04820974122788e-09 hm5C_site_53987 DeepMRMD:0;iRNA_m5C:1.04820974122788e-09 53988 chrX 150349783 150349783 1 + C A LUSC 150349779 + 150349759 150349799 41 CGCTGGGCCCACCAAGCCTGCTGCCAGCCAGCTGGAGTCTG CGCTGGGCCCACCAAGCCTGCTGCAAGCCAGCTGGAGTCTG < 41bp 0.439006385410132 0.817506628845316 0.096823424 0.15620884 prediction 0.635013257690632 Functional Gain - GPR50 ENSG00000102195 CDS Human protein_coding chrX:150349779 chrX:150349783 synonymous SNV . 0 25 hm5C_associated_SNPs_100843 0 0 0 0 0 exosome 0.500231643921094 0.500231643921093 0 0 hm5C_site_53988 DeepMRMD:0;iRNA_m5C:0 53989 chrX 150349612 150349612 1 + C A LGG 150349608 + 150349588 150349628 41 CCATGCTGAGCCCACCACTGCTGACTATCCCAAGCCTGCCA CCATGCTGAGCCCACCACTGCTGAATATCCCAAGCCTGCCA < 41bp 0.437575904704821 0.817492775493713 0.1313541 0.34511656 prediction 0.634985550987427 Functional Gain - GPR50 ENSG00000102195 CDS Human protein_coding chrX:150349608 chrX:150349612 nonsynonymous SNV 0.085 1 25 hm5C_associated_SNPs_100844 0 0 0 0 0 exosome 0.500231643920751 0.500231643921092 0 6.83009204749396e-13 hm5C_site_53989 DeepMRMD:0;iRNA_m5C:6.83009204749396e-13 53990 chr16 8829607 8829607 1 + T G PAAD 8829605 + 8829585 8829625 41 CCTCAAGGGGTCATGGCCTCCATGTTGCTCGCCCAGCGCCT CCTCAAGGGGTCATGGCCTCCAGGTTGCTCGCCCAGCGCCT < 41bp 0.483272695185399 0.81746539147163 0.12980142 0.873056 prediction 0.63493078294326 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8829605 chr16:8829607 nonsynonymous SNV 0.562 0 23 hm5C_associated_SNPs_100845 0 0 1 0 1 cytosol 0.500231643905787 0.500231643921093 0.746112 3.06108471903599e-11 hm5C_site_53990 DeepMRMD:0.746112;iRNA_m5C:3.06108471903599e-11 53991 chr15 24921171 24921171 1 + C A LUSC 24921167 + 24921147 24921187 41 CGCCCTTTCCGCGGCCTGTTCCGCCGGAACGCCCGTCGCAG CGCCCTTTCCGCGGCCTGTTCCGCAGGAACGCCCGTCGCAG < 41bp 0.518248670378857 0.835709605713201 0.5000768 0.43679813 prediction 0.634921870668688 Functional Gain - NPAP1 ENSG00000185823 CDS Human protein_coding chr15:24921167 chr15:24921171 synonymous SNV . 0 25 hm5C_associated_SNPs_100846 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_53991 DeepMRMD:0;iRNA_m5C:0 53992 chr19 42221641 42221641 1 + T G LUSC 42221639 + 42221619 42221659 41 GACCACAGCGACCCAGTCATCCTGAATGTCCTCTGTGAGTA GACCACAGCGACCCAGTCATCCGGAATGTCCTCTGTGAGTA < 41bp 0.500319529988682 0.817751439964731 0.22757512 0.57818717 prediction 0.634863819952099 Functional Gain - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42221639 chr19:42221641 nonsynonymous SNV 0.011 2 23 hm5C_associated_SNPs_100847 0 0 0 0 1 Cytosol 0.500231668905884 0.500231631165377 0.15637434 0 hm5C_site_53992 DeepMRMD:0.15637434;iRNA_m5C:0 53993 chr7 143079922 143079922 1 + T G rs144879938 143079919 + 143079899 143079939 41 ATCTGGATATGTGCCCCCACCAGTGGCCACTCCATTCAGTT ATCTGGATATGTGCCCCCACCAGGGGCCACTCCATTCAGTT < 41bp 0.434438666544561 0.817427899685031 0.020879745 0.82884175 prediction 0.634855799370062 Functional Gain - ZYX ENSG00000159840 CDS Human protein_coding chr7:143079919 chr7:143079922 nonsynonymous SNV 0.961 1 24 hm5C_associated_SNPs_100848 0 0 1 0 1 Ribosome 0.500231643823035 0.500231491041022 0.6576835 0 hm5C_site_53993 DeepMRMD:0.6576835;iRNA_m5C:0 53994 chr5 121187742 121187742 1 + C A LUAD 121187738 + 121187718 121187758 41 CCCGGTGCGCTGCTGCTTCGCGCTCCCGCTGCGTTGGGCCC CCCGGTGCGCTGCTGCTTCGCGCTACCGCTGCGTTGGGCCC < 41bp 0.476199248181029 0.817408081606037 0.21753842 0.1920811 prediction 0.634816163212074 Functional Gain - FTMT ENSG00000181867 CDS Human protein_coding chr5:121187738 chr5:121187742 synonymous SNV . 0 25 hm5C_associated_SNPs_100849 0 0 0 0 0 unknown 0.500231642879142 0.500231643946473 0 2.13466200271739e-09 hm5C_site_53994 DeepMRMD:0;iRNA_m5C:2.13466200271739e-09 53995 chr1 247655067 247655067 1 + C A STAD 247655063 + 247655043 247655083 41 GCTCTCCTCCTGGTGCCGCTCTCCCTCATCCTCATCTCCTA GCTCTCCTCCTGGTGCCGCTCTCCATCATCCTCATCTCCTA < 41bp 0.519537165975628 0.836941385705053 0.3835106 0.9659922 prediction 0.63480843945885 Functional Gain - OR2W5 ENSG00000203664 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:247655063 chr1:247655067 . . 0 25 hm5C_associated_SNPs_100850 0 0 0 0 0 unknown 0.500231643920958 0.50023164398716 0.9319844 1.32403421559957e-10 hm5C_site_53995 DeepMRMD:0.9319844;iRNA_m5C:1.32403421559957e-10 53996 chr4 156135977 156135977 1 + C A LIHC 156135973 + 156135953 156135993 41 CAGCTTGCCGTTGACATTGACAGCCAGGTCCTGGACCTGAA CAGCTTGCCGTTGACATTGACAGCAAGGTCCTGGACCTGAA < 41bp 0.425148974529938 0.817399593190506 0.32814568 0.34625775 prediction 0.634799186381012 Functional Gain - NPY2R ENSG00000185149 CDS Human protein_coding chr4:156135973 chr4:156135977 nonsynonymous SNV 0.732 0 25 hm5C_associated_SNPs_100851 0 0 0 0 0 unknown 0.500231644330315 0.500232265566028 0 1.24247142552214e-06 hm5C_site_53996 DeepMRMD:0;iRNA_m5C:1.24247142552214e-06 53997 chr12 132281892 132281892 1 + C A COAD 132281888 + 132281868 132281908 41 CCTGTGGAGAGTCGGGGCTCCAGCCAGGAGCGCTCCAGGTA CCTGTGGAGAGTCGGGGCTCCAGCAAGGAGCGCTCCAGGTA < 41bp 0.555787419934133 0.873175436896305 0.3844806 0.38532227 prediction 0.634776033924342 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132281888 chr12:132281892 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_100852 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643918351 0 0 hm5C_site_53997 DeepMRMD:0;iRNA_m5C:0 53998 chr20 62494295 62494295 1 + C A rs113433577 62494291 + 62494271 62494311 41 CCTGAGGAGTTTCAGTTGCCCTGGCGGCTGTAACCTATATG CCTGAGGAGTTTCAGTTGCCCTGGAGGCTGTAACCTATATG < 41bp 0.530123244741333 0.847500905692325 0.3826088 0.4956273 prediction 0.634755321901984 Functional Gain - ABHD16B ENSG00000183260 CDS Human protein_coding chr20:62494291 chr20:62494295 synonymous SNV . 0 25 hm5C_associated_SNPs_100853 0 0 0 0 0 exosome 0.500231643922335 0.500231643931835 0 1.89985804865955e-11 hm5C_site_53998 DeepMRMD:0;iRNA_m5C:1.89985804865955e-11 53999 chr11 123810764 123810764 1 + C A COAD 123810760 + 123810740 123810780 41 TGTCTGTGCACTCCTTATGGCAGCCTCCTGGGTGGGGGGCT TGTCTGTGCACTCCTTATGGCAGCATCCTGGGTGGGGGGCT < 41bp 0.450908069031627 0.817367359899104 0.11048916 0.14548743 prediction 0.634734719798207 Functional Gain - OR4D5 ENSG00000171014 CDS Human protein_coding chr11:123810760 chr11:123810764 synonymous SNV . 0 25 hm5C_associated_SNPs_100854 0 0 0 0 0 exosome 0.500231639793708 0.500231644124411 0 8.66140625888079e-09 hm5C_site_53999 DeepMRMD:0;iRNA_m5C:8.66140625888079e-09 54000 chrX 99919868 99919868 1 + T G SKCM 99919865 + 99919845 99919885 41 CGCTGTGACTACAGCTGTTCCAGTGGCTACCACCTGGAAGG CGCTGTGACTACAGCTGTTCCAGGGGCTACCACCTGGAAGG < 41bp 0.570724568244666 0.888090816777286 0.5629497 0.91341615 prediction 0.634732497065239 Functional Gain - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99919865 chrX:99919868 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_100855 0 0 0 0 2 nucleus 0.500231643921113 0.500231643921092 0.7009329 0 hm5C_site_54000 DeepMRMD:0.7009329;iRNA_m5C:0 54001 chr18 43698193 43698193 1 + C A rs115018280 43698189 + 43698169 43698209 41 CATGGAGAGTGTGAATTTTTCCCCCGCCAATCTCTCTAGCA CATGGAGAGTGTGAATTTTTCCCCAGCCAATCTCTCTAGCA < 41bp 0.424937905947325 0.817357048096637 0.044214994 0.07068947 prediction 0.634714096193274 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43698189 chr18:43698193 synonymous SNV . 0 25 hm5C_associated_SNPs_100856 0 0 1 0 2 Ribosome 0.500231643921098 0.50023164371207 0 0 hm5C_site_54001 DeepMRMD:0;iRNA_m5C:0 54002 chr4 761927 761927 1 + C A rs190366269 761923 + 761903 761943 41 AGCTGATAGATTTAAATACACAGACGGGCGAGTGGCGCCCG AGCTGATAGATTTAAATACACAGAAGGGCGAGTGGCGCCCG < 41bp 0.517877366591288 0.83522903153933 0.41820848 0.4445726 prediction 0.634703329896084 Functional Gain - PCGF3 ENSG00000249592 ncRNA_intronic Human antisense chr4:761923 chr4:761927 . . 0 25 hm5C_associated_SNPs_100857 0 0 1 0 0 Cytosol 0.500231643921093 0.500231643921092 0 0 hm5C_site_54002 DeepMRMD:0;iRNA_m5C:0 54003 chr22 21134356 21134356 1 + C A OV 21134352 + 21134332 21134372 41 CTTTGCTGAGGCCCAGATAGCTGACTTCTCAGACCCTGCCT CTTTGCTGAGGCCCAGATAGCTGAATTCTCAGACCCTGCCT < 41bp 0.438550545382126 0.817336996152559 0.0522075 0.050844252 prediction 0.634673992305119 Functional Gain - SERPIND1 ENSG00000099937 CDS Human protein_coding chr22:21134352 chr22:21134356 nonsynonymous SNV 0.821 2 25 hm5C_associated_SNPs_100858 0 0 1 0 0 cytosol 0.500231643922149 0.500231643921095 0 0 hm5C_site_54003 DeepMRMD:0;iRNA_m5C:0 54004 chr13 70681819 70681819 1 + C A LUSC 70681815 + 70681795 70681835 41 GCTTCACATCGAAGTCTTTTCGCCCAGAGCCTGACATGCTT GCTTCACATCGAAGTCTTTTCGCCAAGAGCCTGACATGCTT < 41bp 0.560377115482283 0.877704168247663 0.03031531 0.45913255 prediction 0.634654105530761 Functional Gain - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681815 chr13:70681819 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_100859 0 0 0 2 1 Nucleus 0.500231644089315 0.500231644554369 0 9.30108878804958e-10 hm5C_site_54004 DeepMRMD:0;iRNA_m5C:9.30108878804958e-10 54005 chr21 45711065 45711065 1 + C A STAD 45711061 + 45711041 45711081 41 CCTCGGGCCTTCCACCTGGCCTGCCTGTCCCCTCCGCTCCG CCTCGGGCCTTCCACCTGGCCTGCATGTCCCCTCCGCTCCG < 41bp 0.57572083550758 0.893038326278902 0.0985336 0.09888068 prediction 0.634634981542644 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45711061 chr21:45711065 nonsynonymous SNV 0.865 4 25 hm5C_associated_SNPs_100860 0 0 0 0 2 exosome 0.500231643921783 0.500231643921092 0 0 hm5C_site_54005 DeepMRMD:0;iRNA_m5C:0 54006 chr19 14139030 14139030 1 + T G SKCM 14139028 + 14139008 14139048 41 CCGTCCAGCATGGCCAGGTACATGCTGCTGCTGCTCCTGGC CCGTCCAGCATGGCCAGGTACAGGCTGCTGCTGCTCCTGGC < 41bp 0.508325684276263 0.825629751859956 0.26674998 0.7732341 prediction 0.634608135167386 Functional Gain - RLN3 ENSG00000171136 CDS Human protein_coding chr19:14139028 chr19:14139030 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_100861 0 0 0 0 0 exosome 0.500231453109239 0.500231495848605 0.5464682 8.54787334247931e-08 hm5C_site_54006 DeepMRMD:0.5464682;iRNA_m5C:8.54787334247931e-08 54007 chr11 63884364 63884364 1 + C A UCEC 63884360 + 63884340 63884380 41 GAGGAGCTGCGGCTGGATGACAACCGCATCTCCACCATCCC GAGGAGCTGCGGCTGGATGACAACAGCATCTCCACCATCCC < 41bp 0.427350371644324 0.817292042733887 0.027234912 0.026035935 prediction 0.634584085467773 Functional Gain - FLRT1 ENSG00000126500 CDS Human protein_coding chr11:63884360 chr11:63884364 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100862 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_54007 DeepMRMD:0;iRNA_m5C:0 54008 chr12 55725826 55725826 1 + C A LUAD 55725822 + 55725802 55725842 41 GACTGAATTTTACATTTTAACTGCCATGTCCTATGACCGCT GACTGAATTTTACATTTTAACTGCAATGTCCTATGACCGCT < 41bp 0.557730880427907 0.875021432568086 0.117206454 0.37588283 prediction 0.634581104280358 Functional Gain - OR6C3 ENSG00000205329 CDS Human protein_coding chr12:55725822 chr12:55725826 synonymous SNV . 0 25 hm5C_associated_SNPs_100863 0 0 0 0 0 unknown 0.500231643921479 0.50023164418035 0 5.17742293482115e-10 hm5C_site_54008 DeepMRMD:0;iRNA_m5C:5.17742293482115e-10 54009 chr6 4021681 4021681 1 + T G UCS 4021678 + 4021658 4021698 41 AGATGGCCGCCGCGGAGACCCAGTCGCTACGGGAGCAGCCA AGATGGCCGCCGCGGAGACCCAGGCGCTACGGGAGCAGCCA < 41bp 0.483126020756705 0.817277164314213 0.22310537 0.8801478 prediction 0.634554328628427 Functional Gain - PRPF4B ENSG00000112739 CDS Human protein_coding chr6:4021678 chr6:4021681 nonsynonymous SNV 0.177 0 24 hm5C_associated_SNPs_100864 0 0 1 0 0 Nucleus 0.500231643893391 0.500231643918626 0.7602956 5.04694064318301e-11 hm5C_site_54009 DeepMRMD:0.7602956;iRNA_m5C:5.04694064318301e-11 54010 chr20 30064336 30064336 1 + C A PAAD 30064332 + 30064312 30064352 41 CCCCTGTCCCCACGGGGCCACCAGCCTGGCCGCCTGAGCAC CCCCTGTCCCCACGGGGCCACCAGACTGGCCGCCTGAGCAC < 41bp 0.443019625888448 0.817274415458787 0.17737707 0.6676525 prediction 0.634548830917574 Functional Gain - REM1 ENSG00000088320 CDS Human protein_coding chr20:30064332 chr20:30064336 nonsynonymous SNV 0.678 0 25 hm5C_associated_SNPs_100865 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.335305 0 hm5C_site_54010 DeepMRMD:0.335305;iRNA_m5C:0 54011 chr9 134165439 134165439 1 + C A LUSC 134165435 + 134165415 134165455 41 CGGGACCGCAACAACGTCCTCAACCGGGCTGAGTTCCTGTC CGGGACCGCAACAACGTCCTCAACAGGGCTGAGTTCCTGTC < 41bp 0.445570539738768 0.817241352537346 0.11199984 0.13848564 prediction 0.634482705074692 Functional Gain - PLPP7 ENSG00000160539 CDS Human protein_coding chr9:134165435 chr9:134165439 synonymous SNV . 0 25 hm5C_associated_SNPs_100866 0 0 0 0 0 exosome 0.500231643920825 0.500231643924551 0 7.45248307509883e-12 hm5C_site_54011 DeepMRMD:0;iRNA_m5C:7.45248307509883e-12 54012 chr1 150997137 150997137 1 + C A LUAD 150997133 + 150997113 150997153 41 TAGCAGAGGTGCTAGACCATCGACCCATCGAGCCGAAACAC TAGCAGAGGTGCTAGACCATCGACACATCGAGCCGAAACAC < 41bp 0.423896744356101 0.817240746592676 0.20572513 0.21363142 prediction 0.634481493185352 Functional Gain - PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:150997133 chr1:150997137 nonsynonymous SNV 0.953 1 25 hm5C_associated_SNPs_100867 0 0 1 0 0 chromatin 0.500231643922592 0.500231643941008 0 3.68323149757543e-11 hm5C_site_54012 DeepMRMD:0;iRNA_m5C:3.68323149757543e-11 54013 chr10 14892032 14892032 1 + C A rs2400104 14892028 + 14892008 14892048 41 AATCCCAACACTTTGGGACACTGACGGGGGGGCGGCGGGTG AATCCCAACACTTTGGGACACTGAAGGGGGGGCGGCGGGTG < 41bp 0.516186267665791 0.833424772868492 0.31776434 0.7850853 prediction 0.634477010405403 Functional Gain - HSPA14 ENSG00000187522 intronic Human protein_coding chr10:14892028 chr10:14892032 . . 0 25 hm5C_associated_SNPs_100868 0 0 0 0 0 Cytosol 0.500231643921093 0.500231644073591 0.5701706 3.04996250477529e-10 hm5C_site_54013 DeepMRMD:0.5701706;iRNA_m5C:3.04996250477529e-10 54014 chrX 152113927 152113927 1 + C A COAD 152113923 + 152113903 152113943 41 ACCCAGCTGTACCCGCTCAGCAACCTGCAGATCCCAGCACC ACCCAGCTGTACCCGCTCAGCAACATGCAGATCCCAGCACC < 41bp 0.444587350389718 0.817224458170703 0.23323229 0.23016202 prediction 0.634448916341405 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152113923 chrX:152113927 nonsynonymous SNV 0.355 3 25 hm5C_associated_SNPs_100869 0 0 0 0 1 chromatin 0.500231643921094 0.500164887807767 0 0 hm5C_site_54014 DeepMRMD:0;iRNA_m5C:0 54015 chr12 109523821 109523821 1 + C A rs530651149 109523817 + 109523797 109523837 41 AAACTGTACTGTTGCGTGTGCAAGCGGCCCCACTAGAGCCT AAACTGTACTGTTGCGTGTGCAAGAGGCCCCACTAGAGCCT < 41bp 0.539338799797438 0.856540826450463 0.8053819 0.8795201 prediction 0.634404053306051 Functional Gain - USP30 ENSG00000135093 UTR3 Human protein_coding chr12:109523817 chr12:109523821 . . 0 25 hm5C_associated_SNPs_100870 0 0 0 0 0 Endoplasmic reticulum 0.500231345458004 0.500231643884031 0.1482764 5.96852055556596e-07 hm5C_site_54015 DeepMRMD:0.1482764;iRNA_m5C:5.96852055556596e-07 54016 chrX 47088476 47088476 1 + C A rs113461071 47088472 + 47088452 47088492 41 CACACTGAGGCCAGGTCTACCCCCCATCATACCAGCCCCCA CACACTGAGGCCAGGTCTACCCCCAATCATACCAGCCCCCA < 41bp 0.429517030258756 0.817189882685392 0.05674967 0.05168268 prediction 0.634379765370783 Functional Gain - CDK16 ENSG00000102225 UTR3 Human protein_coding chrX:47088472 chrX:47088476 . . 0 25 hm5C_associated_SNPs_100871 0 0 1 1 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54016 DeepMRMD:0;iRNA_m5C:0 54017 chr13 114201650 114201650 1 + C A UCEC 114201646 + 114201626 114201666 41 TTCCCCACGTTTGTGGCGTACGAGCTCACGGTGCTGGTGTT TTCCCCACGTTTGTGGCGTACGAGATCACGGTGCTGGTGTT < 41bp 0.564706045554281 0.881871490922402 0.42312336 0.47407466 prediction 0.634330890736241 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114201646 chr13:114201650 nonsynonymous SNV 0.061 1 25 hm5C_associated_SNPs_100872 0 0 1 0 2 Ribosome 0.50023164392135 0.500231643921092 0 0 hm5C_site_54017 DeepMRMD:0;iRNA_m5C:0 54018 chr11 44102762 44102762 1 + C A STAD 44102758 + 44102738 44102778 41 ATGTCTGGGCTCCGCTTTGGCACGCTGTACACAGAAAACCA ATGTCTGGGCTCCGCTTTGGCACGATGTACACAGAAAACCA < 41bp 0.559535700367818 0.876697899443347 0.38744938 0.2929256 prediction 0.634324398151057 Functional Gain - ACCS ENSG00000110455 CDS Human protein_coding chr11:44102758 chr11:44102762 nonsynonymous SNV 0.822 5 25 hm5C_associated_SNPs_100873 0 0 1 0 1 chromatin 0.500231637359071 0.500231643476074 0 1.22340069186322e-08 hm5C_site_54018 DeepMRMD:0;iRNA_m5C:1.22340069186322e-08 54019 chr10 25464744 25464744 1 + C A LUAD 25464740 + 25464720 25464760 41 GGGCGCTGGACACACTGACACACGCCACCAACTTCCTCAAC GGGCGCTGGACACACTGACACACGACACCAACTTCCTCAAC < 41bp 0.460617437204905 0.817132384162372 0.032000333 0.16355705 prediction 0.634264768324743 Functional Gain - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25464740 chr10:25464744 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100874 0 0 0 0 0 Endoplasmic reticulum 0.500231644112023 0.500231644765327 0 1.30660859909426e-09 hm5C_site_54019 DeepMRMD:0;iRNA_m5C:1.30660859909426e-09 54020 chrX 37028884 37028884 1 + C A UCEC 37028880 + 37028860 37028900 41 ACTCGTCGAGTGTCCAGTCTCCGCCTGGAGCCTCCCAAGAC ACTCGTCGAGTGTCCAGTCTCCGCATGGAGCCTCCCAAGAC < 41bp 0.557718875804777 0.874831662872992 0.07048288 0.32334107 prediction 0.63422557413643 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37028880 chrX:37028884 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_100875 0 0 0 0 0 unknown 0.500231643919914 0.500229345652727 0 0 hm5C_site_54020 DeepMRMD:0;iRNA_m5C:0 54021 chr19 36430892 36430892 1 + C A UCEC 36430888 + 36430868 36430908 41 AACGTCAACACGTTGGGCCTCGACCACAACCTGCTGGCTTC AACGTCAACACGTTGGGCCTCGACAACAACCTGCTGGCTTC < 41bp 0.434888063174303 0.817110373984413 0.3497964 0.45003706 prediction 0.634220747968826 Functional Gain - LRFN3 ENSG00000126243 CDS Human protein_coding chr19:36430888 chr19:36430892 nonsynonymous SNV 0.972 3 25 hm5C_associated_SNPs_100876 0 0 1 0 0 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_54021 DeepMRMD:0;iRNA_m5C:0 54022 chr6 27114961 27114961 1 + C A UCEC 27114957 + 27114937 27114977 41 AGCTCGCGCCAAGGCCAAGACCCGCTCTTCTCGGGCTGGGC AGCTCGCGCCAAGGCCAAGACCCGATCTTCTCGGGCTGGGC < 41bp 0.459613476976981 0.817068743061353 0.26720718 0.4006298 prediction 0.634137486122706 Functional Gain - HIST1H2AH ENSG00000184825 CDS Human other chr6:27114957 chr6:27114961 synonymous SNV . 0 25 hm5C_associated_SNPs_100877 0 0 1 0 0 cytosol 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_54022 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 54023 chr17 74523827 74523827 1 + C A rs144615545 74523823 + 74523803 74523843 41 GGTGGCCAAGGCAGGTGGAGCTAGCGGTCGAGGTTTCTGGA GGTGGCCAAGGCAGGTGGAGCTAGAGGTCGAGGTTTCTGGA < 41bp 0.516584135700411 0.833651926147777 0.89610684 0.8970122 prediction 0.634135580894731 Functional Gain - CYGB ENSG00000161544 UTR3 Human protein_coding chr17:74523823 chr17:74523827 . . 0 25 hm5C_associated_SNPs_100878 0 0 0 0 1 Cytosol 0.500231643919961 0.500231643967442 0.00181072000000015 9.49620382328931e-11 hm5C_site_54023 DeepMRMD:0.00181072000000015;iRNA_m5C:9.49620382328931e-11 54024 chr7 156976675 156976675 1 + C A COAD 156976671 + 156976651 156976691 41 CAGCGCGAGCTGTCACGACTCAGCCAGTGACTCTGAGGAGG CAGCGCGAGCTGTCACGACTCAGCAAGTGACTCTGAGGAGG < 41bp 0.45164681681375 0.817050959167487 0.06508562 0.2868551 prediction 0.634101918334974 Functional Gain - UBE3C ENSG00000009335 CDS Human protein_coding chr7:156976671 chr7:156976675 synonymous SNV . 0 25 hm5C_associated_SNPs_100879 0 0 1 0 1 Ribosome 0.500231643921092 0.500231701355023 0 1.14867861444878e-07 hm5C_site_54024 DeepMRMD:0;iRNA_m5C:1.14867861444878e-07 54025 chr7 54617660 54617660 1 + C A LUAD 54617656 + 54617636 54617676 41 AGCTTCAGGAACACAAGGCCCAGGCCTATCTGAAAGTCAAT AGCTTCAGGAACACAAGGCCCAGGACTATCTGAAAGTCAAT < 41bp 0.434395856531267 0.817045718839866 0.33237472 0.2803973 prediction 0.634091437679732 Functional Gain - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54617656 chr7:54617660 nonsynonymous SNV 0.904 3 25 hm5C_associated_SNPs_100880 0 0 1 0 0 exosome 0.500231643933895 0.500231646839077 0 5.81036418978442e-09 hm5C_site_54025 DeepMRMD:0;iRNA_m5C:5.81036418978442e-09 54026 chr4 71232742 71232742 1 + C A rs3775732 71232738 + 71232718 71232758 41 ACAACTGCAACAGGTGCCACCACCCACAAAAGACAACACTA ACAACTGCAACAGGTGCCACCACCAACAAAAGACAACACTA < 41bp 0.46773927680669 0.817032305021472 0.04465598 0.23172516 prediction 0.634064610042945 Functional Gain - SMR3A ENSG00000109208 UTR3 Human protein_coding chr4:71232738 chr4:71232742 . . 0 25 hm5C_associated_SNPs_100881 0 0 0 1 0 unknown 0.500231643919785 0.500231643988384 0 1.37197808669498e-10 hm5C_site_54026 DeepMRMD:0;iRNA_m5C:1.37197808669498e-10 54027 chr4 71555168 71555168 1 + C A COAD 71555164 + 71555144 71555184 41 GGTGGAACAAGGGATCATTCCACCCGGAAAAGGAAGCCAAT GGTGGAACAAGGGATCATTCCACCAGGAAAAGGAAGCCAAT < 41bp 0.573649915102815 0.890669285126487 0.82187265 0.8825326 prediction 0.634038740047345 Functional Gain - UTP3 ENSG00000132467 CDS Human protein_coding chr4:71555164 chr4:71555168 synonymous SNV . 0 25 hm5C_associated_SNPs_100882 0 0 1 0 0 Cytosol 0.50023164448022 0.500231643921093 0.1213199 0 hm5C_site_54027 DeepMRMD:0.1213199;iRNA_m5C:0 54028 chr7 156469246 156469246 1 + C A COAD 156469242 + 156469222 156469262 41 CCTGCTCACATGTGTTCCACCATGCGTGTCTGCTGGCACTA CCTGCTCACATGTGTTCCACCATGAGTGTCTGCTGGCACTA < 41bp 0.476248910349764 0.816979912268523 0.19841444 0.1494169 prediction 0.633959824537047 Functional Gain - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156469242 chr7:156469246 nonsynonymous SNV 0.012 0 25 hm5C_associated_SNPs_100883 0 0 0 4 0 Cytosol 0.500232274686161 0.500231644034321 0 0 hm5C_site_54028 DeepMRMD:0;iRNA_m5C:0 54029 chr22 25246291 25246291 1 + C A LIHC 25246287 + 25246267 25246307 41 TCCAGGAGAATGTGCGGAAGCTGCCGAAGCTGCCCAACTTG TCCAGGAGAATGTGCGGAAGCTGCAGAAGCTGCCCAACTTG < 41bp 0.417312228750086 0.816974541789024 0.4362561 0.89361095 prediction 0.633949083578049 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25246287 chr22:25246291 nonsynonymous SNV 0.948 1 25 hm5C_associated_SNPs_100884 0 0 0 0 1 exosome 0.500231655179162 0.500228769776556 0.7872219 0 hm5C_site_54029 DeepMRMD:0.7872219;iRNA_m5C:0 54030 chr5 140741831 140741831 1 + C A SKCM 140741827 + 140741807 140741847 41 TCTTCTTCCTCGCGGTGATTCTGGCAATCTCCCTGCGCCTG TCTTCTTCCTCGCGGTGATTCTGGAAATCTCCCTGCGCCTG < 41bp 0.442903593754002 0.816971699819686 0.45742065 0.46167332 prediction 0.633943399639372 Functional Gain - PCDHGB2 ENSG00000253910 CDS Human protein_coding chr5:140741827 chr5:140741831 nonsynonymous SNV 0.520 3 25 hm5C_associated_SNPs_100885 0 0 0 0 0 exosome 0.500231668940884 0.500231671015336 0 4.14890455324723e-09 hm5C_site_54030 DeepMRMD:0;iRNA_m5C:4.14890455324723e-09 54031 chr17 51900439 51900439 1 + C A LUAD 51900435 + 51900415 51900455 41 CCCTGAATCCCCATGTCTCTCGCCCCTGAAACCCTTGAAGC CCCTGAATCCCCATGTCTCTCGCCACTGAAACCCTTGAAGC < 41bp 0.561942005036172 0.878889256872083 0.21128547 0.26119262 prediction 0.633894503671821 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51900435 chr17:51900439 synonymous SNV . 0 25 hm5C_associated_SNPs_100886 0 0 0 0 0 exosome 0.500231643920449 0.500231643918931 0 0 hm5C_site_54031 DeepMRMD:0;iRNA_m5C:0 54032 chr19 42219022 42219022 1 + C A rs113097830 42219018 + 42218998 42219038 41 GGTGGGTAAACAATCAGAGCCTCCCGGTCAGTCCCAGGCTG GGTGGGTAAACAATCAGAGCCTCCAGGTCAGTCCCAGGCTG < 41bp 0.414843990303542 0.816922243126887 0.045806438 0.94537103 prediction 0.633844486253774 Functional Gain - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42219018 chr19:42219022 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100887 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921103 0.89074206 2.1316282072803e-14 hm5C_site_54032 DeepMRMD:0.89074206;iRNA_m5C:2.1316282072803e-14 54033 chr14 93397703 93397703 1 + C A HNSC 93397699 + 93397679 93397719 41 ACGGAGCCAGGCCCCAGGCCCTCCCGGAGCCCATGCAGGAG ACGGAGCCAGGCCCCAGGCCCTCCAGGAGCCCATGCAGGAG < 41bp 0.420531107447218 0.816900825905805 0.04540944 0.95382446 prediction 0.63380165181161 Functional Gain - CHGA ENSG00000100604 CDS Human protein_coding chr14:93397699 chr14:93397703 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_100888 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.90764892 0 hm5C_site_54033 DeepMRMD:0.90764892;iRNA_m5C:0 54034 chr8 110573135 110573135 1 + C A COAD 110573131 + 110573111 110573151 41 ATGGGAAGAAGAAGAAGATGCAGCCTGGCAAGCAGAAGAAG ATGGGAAGAAGAAGAAGATGCAGCATGGCAAGCAGAAGAAG < 41bp 0.426704857068926 0.816881051756982 0.116149396 0.113756806 prediction 0.633762103513964 Functional Gain - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110573131 chr8:110573135 synonymous SNV . 0 25 hm5C_associated_SNPs_100889 0 0 0 2 1 Ribosome 0.50023164441388 0.500231746155172 0 2.03482583227554e-07 hm5C_site_54034 DeepMRMD:0;iRNA_m5C:2.03482583227554e-07 54035 chr17 77020184 77020184 1 + C A rs191809468 77020180 + 77020160 77020200 41 CTGAGGCGCGGCGCGGGGCACACACGGTTAATCCTCCGCGG CTGAGGCGCGGCGCGGGGCACACAAGGTTAATCCTCCGCGG < 41bp 0.514563083662321 0.83143239416287 0.39541245 0.80526745 prediction 0.633738621001098 Functional Gain - C1QTNF1-AS1 ENSG00000173918 UTR5 Human protein_coding chr17:77020180 chr17:77020184 . . 0 25 hm5C_associated_SNPs_100890 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0.6105349 6.66133814775094e-16 hm5C_site_54035 DeepMRMD:0.6105349;iRNA_m5C:6.66133814775094e-16 54036 chr12 7023170 7023170 1 + C A UCEC 7023166 + 7023146 7023186 41 CCAAAGCTGGAAATTCATCACAACCTGAGGCCCAGGATCTG CCAAAGCTGGAAATTCATCACAACATGAGGCCCAGGATCTG < 41bp 0.560306720388053 0.877174289865375 0.022105932 0.039920837 prediction 0.633735138954645 Functional Gain - LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7023166 chr12:7023170 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_100891 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643881676 0 0 hm5C_site_54036 DeepMRMD:0;iRNA_m5C:0 54037 chr8 56436339 56436339 1 + C A LUAD 56436335 + 56436315 56436355 41 GGTGTTCAGCAGCTTTTTAACTGGCGTTGTTTTTATGCTGA GGTGTTCAGCAGCTTTTTAACTGGAGTTGTTTTTATGCTGA < 41bp 0.460550485329185 0.816830531664623 0.4016787 0.73793185 prediction 0.633661063329247 Functional Gain - XKR4 ENSG00000206579 CDS Human protein_coding chr8:56436335 chr8:56436339 synonymous SNV . 0 25 hm5C_associated_SNPs_100892 0 0 0 0 0 exosome 0.500231119266895 0.500209212239852 0.4758637 0 hm5C_site_54037 DeepMRMD:0.4758637;iRNA_m5C:0 54038 chr14 24878180 24878180 1 + C A PRAD 24878176 + 24878156 24878196 41 GCGTGCTTCAATTTCCCCTTCTGGCAGAGACCTCTGGGCCC GCGTGCTTCAATTTCCCCTTCTGGAAGAGACCTCTGGGCCC < 41bp 0.424437720168154 0.81682747986694 0.14078394 0.31263006 prediction 0.633654959733879 Functional Gain - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24878176 chr14:24878180 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_100893 0 0 0 0 0 Exosome 0.500230998732223 0.50023164178828 0 1.28611211214213e-06 hm5C_site_54038 DeepMRMD:0;iRNA_m5C:1.28611211214213e-06 54039 chr7 65154321 65154321 1 + T G UCEC 65154318 + 65154298 65154338 41 GCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAA GCTCTTCATGAACTCTTATGCTGGACTAATGTTTCAACCAA < 41bp 0.488105581282481 0.816809801207346 0.21320808 0.20279327 prediction 0.633619602414691 Functional Gain - INTS4P2 ENSG00000232270 ncRNA_exonic Human other chr7:65154318 chr7:65154321 . . 0 24 hm5C_associated_SNPs_100894 0 0 0 3 2 unknown 0.500231464684556 0.500231637598622 0 3.45828131242953e-07 hm5C_site_54039 DeepMRMD:0;iRNA_m5C:3.45828131242953e-07 54040 chr19 1434803 1434803 1 + C A COAD 1434799 + 1434779 1434819 41 AGACCCCAGCCAGCAGCCTCCTTCCTACGGGGGTCCCTCCG AGACCCCAGCCAGCAGCCTCCTTCATACGGGGGTCCCTCCG < 41bp 0.430326900864115 0.816809384669956 0.12737617 0.9191154 prediction 0.633618769339912 Functional Gain - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1434799 chr19:1434803 synonymous SNV . 0 25 hm5C_associated_SNPs_100895 0 0 1 0 1 chromatin 0.500231643921092 0.500231643894699 0.8382308 0 hm5C_site_54040 DeepMRMD:0.8382308;iRNA_m5C:0 54041 chr19 4305974 4305974 1 + C A UCEC 4305970 + 4305950 4305990 41 TGAGGAAGATCATCAAAACACTGGCTGTGAAGAATGAAGAA TGAGGAAGATCATCAAAACACTGGATGTGAAGAATGAAGAA < 41bp 0.574671845525947 0.891462212093864 0.098002374 0.12217656 prediction 0.633580733135834 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4305970 chr19:4305974 nonsynonymous SNV 0.137 4 25 hm5C_associated_SNPs_100896 0 0 1 0 3 cytosol 0.500231632157268 0.500231639788788 0 1.52630403871257e-08 hm5C_site_54041 DeepMRMD:0;iRNA_m5C:1.52630403871257e-08 54042 chr14 70926203 70926203 1 + C A LUAD 70926199 + 70926179 70926219 41 TATGGGTGGTCCCCACCCTACTGCCAGCACAGAGGCTATGG TATGGGTGGTCCCCACCCTACTGCAAGCACAGAGGCTATGG < 41bp 0.572899981668397 0.889674936716548 0.06978336 0.28907964 prediction 0.633549910096302 Functional Gain - ADAM21 ENSG00000139985 CDS Human protein_coding chr14:70926199 chr14:70926203 nonsynonymous SNV 0.824 0 25 hm5C_associated_SNPs_100897 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54042 DeepMRMD:0;iRNA_m5C:0 54043 chr8 126369489 126369489 1 + C A rs184167565 126369485 + 126369465 126369505 41 TCTTCAAGCTGACAGAGAAGCTGACGGAACAGAAGGAGTGG TCTTCAAGCTGACAGAGAAGCTGAAGGAACAGAAGGAGTGG < 41bp 0.438181435962873 0.816764851978755 0.18601513 0.39957607 prediction 0.633529703957509 Functional Gain - NSMCE2 ENSG00000156831 CDS Human protein_coding chr8:126369485 chr8:126369489 nonsynonymous SNV 0.860 0 25 hm5C_associated_SNPs_100898 0 0 1 0 2 Cytosol 0.500231594900231 0.50023164414166 0 9.8482859200999e-08 hm5C_site_54043 DeepMRMD:0;iRNA_m5C:9.8482859200999e-08 54044 chr11 60197159 60197159 1 + C A LUAD 60197155 + 60197135 60197175 41 CACCGACACCATCATGGATTCAAGCACCGCACACAGTCCGG CACCGACACCATCATGGATTCAAGAACCGCACACAGTCCGG < 41bp 0.537882175155514 0.854631982011269 0.06549057 0.18681034 prediction 0.63349961371151 Functional Gain - MS4A5 ENSG00000166930 CDS Human protein_coding chr11:60197155 chr11:60197159 nonsynonymous SNV 0.317 0 25 hm5C_associated_SNPs_100899 0 0 0 0 0 unknown 0.500231632579714 0.500231642939413 0 2.07193975310105e-08 hm5C_site_54044 DeepMRMD:0;iRNA_m5C:2.07193975310105e-08 54045 chr19 15905601 15905601 1 + T G SKCM 15905598 + 15905578 15905618 41 CACCTGTGCCTCTCACCTCACTGTGGTGGTCGTGCACTATG CACCTGTGCCTCTCACCTCACTGGGGTGGTCGTGCACTATG < 41bp 0.550610552400269 0.867354688756922 0.38406128 0.9057307 prediction 0.633488272713306 Functional Gain - OR10H5 ENSG00000172519 CDS Human protein_coding chr19:15905598 chr19:15905601 nonsynonymous SNV 0.029 4 24 hm5C_associated_SNPs_100900 0 0 0 0 0 unknown 0.500231643992237 0.500231644293304 0.8114614 6.02135008520577e-10 hm5C_site_54045 DeepMRMD:0.8114614;iRNA_m5C:6.02135008520577e-10 54046 chr3 89448578 89448578 1 + C A LUAD 89448574 + 89448554 89448594 41 ATTCCAAATCCGAGCCCGAACAGCCGCTGGATATGGGACGA ATTCCAAATCCGAGCCCGAACAGCAGCTGGATATGGGACGA < 41bp 0.438548073057271 0.816711177678827 0.38976732 0.5380473 prediction 0.633422355357655 Functional Gain - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89448574 chr3:89448578 synonymous SNV . 0 25 hm5C_associated_SNPs_100901 0 0 0 0 1 Ribosome 0.500231643921092 0.500231739344074 0.0760946 1.90845964143094e-07 hm5C_site_54046 DeepMRMD:0.0760946;iRNA_m5C:1.90845964143094e-07 54047 chrX 68725656 68725656 1 + C A HNSC 68725652 + 68725632 68725672 41 TGACTCCCTTTCCCGTGCCCCGGCCGAGTTCCCCTCCGCCA TGACTCCCTTTCCCGTGCCCCGGCAGAGTTCCCCTCCGCCA < 41bp 0.426150806475266 0.816701911220666 0.776261 0.8233485 prediction 0.633403822441333 Functional Gain - FAM155B ENSG00000130054 CDS Human protein_coding chrX:68725652 chrX:68725656 synonymous SNV . 0 25 hm5C_associated_SNPs_100902 0 0 0 0 0 exosome 0.500231643919701 0.500231643925037 0.0941750000000001 1.06719078019069e-11 hm5C_site_54047 DeepMRMD:0.0941750000000001;iRNA_m5C:1.06719078019069e-11 54048 chr2 99226303 99226303 1 + C A LAML 99226299 + 99226279 99226319 41 CAGGGATGCGGCAAGACACACAGCCGGAGCGAAACGCTACA CAGGGATGCGGCAAGACACACAGCAGGAGCGAAACGCTACA < 41bp 0.559035548803105 0.875736743033241 0.3965327 0.6883966 prediction 0.633402388460272 Functional Gain - UNC50 ENSG00000115446 CDS Human protein_coding chr2:99226299 chr2:99226303 synonymous SNV . 0 25 hm5C_associated_SNPs_100903 0 0 1 0 1 Endoplasmic reticulum 0.500231643921952 0.500235737202376 0.3767932 8.18656084811131e-06 hm5C_site_54048 DeepMRMD:0.3767932;iRNA_m5C:8.18656084811131e-06 54049 chr4 184585067 184585067 1 + C A COAD 184585063 + 184585043 184585083 41 TCCCTGTGGAATTATGTTGCCGGCCTATGGCCTTTGTTACT TCCCTGTGGAATTATGTTGCCGGCATATGGCCTTTGTTACT < 41bp 0.432275085788915 0.816658072153868 0.30062366 0.4999352 prediction 0.633316144307736 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184585063 chr4:184585067 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_100904 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921095 0 5.99520433297585e-15 hm5C_site_54049 DeepMRMD:0;iRNA_m5C:5.99520433297585e-15 54050 chr6 117246806 117246806 1 + C A rs137956032 117246802 + 117246782 117246822 41 CCAGTTCCCTGCTGGGAACACAGACAACATGCCGCTCACAG CCAGTTCCCTGCTGGGAACACAGAAAACATGCCGCTCACAG < 41bp 0.43623515297858 0.816598492618356 0.043373317 0.08558795 prediction 0.633196985236712 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117246802 chr6:117246806 nonsynonymous SNV 0.522 0 25 hm5C_associated_SNPs_100905 0 0 0 0 1 membrane 0.500231643921092 0.500231643920972 0 0 hm5C_site_54050 DeepMRMD:0;iRNA_m5C:0 54051 chr8 105361044 105361044 1 + T G UCEC 105361041 + 105361021 105361061 41 TTTATTCTTCTTGTCTTTCTCTCTTGTGGCCTGCGTGAAGG TTTATTCTTCTTGTCTTTCTCTCGTGTGGCCTGCGTGAAGG < 41bp 0.556396899327119 0.872988458433193 0.13060057 0.17781186 prediction 0.633183118212149 Functional Gain - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361041 chr8:105361044 synonymous SNV . 0 24 hm5C_associated_SNPs_100906 0 0 0 0 0 exosome 0.500231643921031 0.500231644931317 0 2.02057193199323e-09 hm5C_site_54051 DeepMRMD:0;iRNA_m5C:2.02057193199323e-09 54052 chr4 6235048 6235048 1 + C A rs188639505 6235044 + 6235024 6235064 41 GGGTCTGGATGCCGCATTCTCTGACCTGTGGCACATTCTGG GGGTCTGGATGCCGCATTCTCTGAACTGTGGCACATTCTGG < 41bp 0.472811823448287 0.816553344630044 0.52661395 0.3892948 prediction 0.633106689260089 Functional Gain - LINC02495 ENSG00000249896 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:6235044 chr4:6235048 . . 0 25 hm5C_associated_SNPs_100907 0 0 0 0 0 unknown 0.500233324311375 0.500231645468413 0 0 hm5C_site_54052 DeepMRMD:0;iRNA_m5C:0 54053 chr1 224922315 224922315 1 + T G SKCM 224922312 + 224922292 224922332 41 AGAACTAGCCTACGACCCACCGGTGGTCATGAATGCCGACA AGAACTAGCCTACGACCCACCGGGGGTCATGAATGCCGACA < 41bp 0.562845084583973 0.879383228592653 0.43608177 0.91969955 prediction 0.633076288017361 Functional Gain - CNIH3 ENSG00000143786 CDS Human protein_coding chr1:224922312 chr1:224922315 nonsynonymous SNV 0.441 1 24 hm5C_associated_SNPs_100908 0 0 0 0 2 exosome 0.500231357024969 0.5002316439143 0.8393991 5.73778661250302e-07 hm5C_site_54053 DeepMRMD:0.8393991;iRNA_m5C:5.73778661250302e-07 54054 chr4 71232500 71232500 1 + C A STAD 71232496 + 71232476 71232516 41 CCTATGGTCCAGGGAGATTTCCACCACCCCTTTCTCCACCC CCTATGGTCCAGGGAGATTTCCACAACCCCTTTCTCCACCC < 41bp 0.442545624233177 0.816535778438513 0.12938929 0.23642609 prediction 0.633071556877025 Functional Gain - SMR3A ENSG00000109208 CDS Human protein_coding chr4:71232496 chr4:71232500 nonsynonymous SNV 0.087 1 25 hm5C_associated_SNPs_100909 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_54054 DeepMRMD:0;iRNA_m5C:0 54055 chr20 43348580 43348580 1 + C A ACC 43348576 + 43348556 43348596 41 CCGACACCATGTACCTGCCCCTGGCCACCTCCCCGATGCCC CCGACACCATGTACCTGCCCCTGGACACCTCCCCGATGCCC < 41bp 0.438943298423019 0.816503331240447 0.26546207 0.3948356 prediction 0.633006662480894 Functional Gain - WISP2 ENSG00000064205 CDS Human protein_coding chr20:43348576 chr20:43348580 nonsynonymous SNV 0.257 0 25 hm5C_associated_SNPs_100910 0 0 0 0 1 nucleus 0.500231643921092 0.500231643921098 0 1.13242748511766e-14 hm5C_site_54055 DeepMRMD:0;iRNA_m5C:1.13242748511766e-14 54056 chr1 71512441 71512441 1 + C A LUAD 71512437 + 71512417 71512457 41 TGGCCGTCTCGGTCGTGATGCGGCCCCACTGGGCACTGGAC TGGCCGTCTCGGTCGTGATGCGGCACCACTGGGCACTGGAC < 41bp 0.553865616793963 0.870353694461095 0.4170397 0.50046337 prediction 0.632976155334262 Functional Gain - PTGER3 ENSG00000050628 CDS Human protein_coding chr1:71512437 chr1:71512441 nonsynonymous SNV 0.980 4 25 hm5C_associated_SNPs_100911 0 0 0 0 0 Endoplasmic reticulum 0.500232079497778 0.500231713273409 0.000926739999999926 0 hm5C_site_54056 DeepMRMD:0.000926739999999926;iRNA_m5C:0 54057 chr5 175110813 175110813 1 + C A LUAD 175110809 + 175110789 175110829 41 GTGGATGGGCTGGTCACCTTCTACCTCCCGCTACTGATCAT GTGGATGGGCTGGTCACCTTCTACATCCCGCTACTGATCAT < 41bp 0.419218972568724 0.816472257607733 0.03618887 0.32705915 prediction 0.632944515215466 Functional Gain - HRH2 ENSG00000113749 CDS Human protein_coding chr5:175110809 chr5:175110813 nonsynonymous SNV 0.903 0 25 hm5C_associated_SNPs_100912 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921103 0 2.1538326677728e-14 hm5C_site_54057 DeepMRMD:0;iRNA_m5C:2.1538326677728e-14 54058 chr1 109742777 109742777 1 + C A LUSC 109742773 + 109742753 109742793 41 ATCTGCAAAACCATAGATTTCTGGCTGAAAGTGGGCATCTC ATCTGCAAAACCATAGATTTCTGGATGAAAGTGGGCATCTC < 41bp 0.571728052629234 0.888189468235238 0.5803035 0.80870986 prediction 0.632922831212009 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109742773 chr1:109742777 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100913 0 0 0 0 1 exosome 0.500231643931591 0.500231643921152 0.45681272 0 hm5C_site_54058 DeepMRMD:0.45681272;iRNA_m5C:0 54059 chr19 49514510 49514510 1 + C A GBM 49514506 + 49514486 49514526 41 AGAGCTTCTCCTTCCTCAACCGGGCCCTGGAGAGTGACATG AGAGCTTCTCCTTCCTCAACCGGGACCTGGAGAGTGACATG < 41bp 0.570274638006522 0.886719023917422 0.6802521 0.8934487 prediction 0.6328887718218 Functional Gain - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49514506 chr19:49514510 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100914 0 0 1 0 2 chromatin 0.500232803043182 0.500231643803211 0.4263932 0 hm5C_site_54059 DeepMRMD:0.4263932;iRNA_m5C:0 54060 chr4 56238052 56238052 1 + C A rs185843453 56238048 + 56238028 56238068 41 GCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCT GCCAGGCTGGTCTCAAACTCCTGAACTCAGGTGATCCACCT < 41bp 0.491279471400523 0.816422944713128 0.17211324 0.3572331 prediction 0.632845889426256 Functional Gain - SRD5A3-AS1 ENSG00000249700 ncRNA_intronic Human processed_transcript chr4:56238048 chr4:56238052 . . 0 25 hm5C_associated_SNPs_100915 0 0 0 0 0 unknown 0.500230961380096 0.500231643981252 0 1.36520231208692e-06 hm5C_site_54060 DeepMRMD:0;iRNA_m5C:1.36520231208692e-06 54061 chr1 160319417 160319417 1 + C A STAD 160319413 + 160319393 160319433 41 GTCCTTGACCAAGCCCAGTCCTGCCTCAGGCTTCTCTCCTA GTCCTTGACCAAGCCCAGTCCTGCATCAGGCTTCTCTCCTA < 41bp 0.587687682568292 0.904087357162712 0.037400246 0.19847965 prediction 0.63279934918884 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160319413 chr1:160319417 synonymous SNV . 0 25 hm5C_associated_SNPs_100916 0 0 1 1 1 Endoplasmic reticulum 0.500231756462582 0.500231643921092 0 0 hm5C_site_54061 DeepMRMD:0;iRNA_m5C:0 54062 chr2 10045025 10045025 1 + T G rs553591595 10045022 + 10045002 10045042 41 CGAGGACATCTACAAAAAAACAGTAGAAGTTGGAACATTTT CGAGGACATCTACAAAAAAACAGGAGAAGTTGGAACATTTT < 41bp 0.475505239053896 0.816395045784192 0.51847446 0.80173266 prediction 0.632790091568383 Functional Gain - TAF1B ENSG00000115750 CDS Human protein_coding chr2:10045022 chr2:10045025 nonsynonymous SNV 0.907 0 24 hm5C_associated_SNPs_100917 0 0 0 0 1 Endoplasmic reticulum 0.500231644444641 0.500231643985333 0.5665164 0 hm5C_site_54062 DeepMRMD:0.5665164;iRNA_m5C:0 54063 chr12 130648479 130648479 1 + C A LUAD 130648475 + 130648455 130648495 41 GCTCGCTGTGGTGGGTGGTCCTCACGCTCACCTGGTTCCTG GCTCGCTGTGGTGGGTGGTCCTCAAGCTCACCTGGTTCCTG < 41bp 0.563556239874337 0.879909331382968 0.02536121 0.1576533 prediction 0.632706183017261 Functional Gain - FZD10 ENSG00000111432 CDS Human protein_coding chr12:130648475 chr12:130648479 nonsynonymous SNV 0.980 3 25 hm5C_associated_SNPs_100918 0 0 0 0 0 exosome 0.50023164365002 0.500231643863349 0 4.26658708363448e-10 hm5C_site_54063 DeepMRMD:0;iRNA_m5C:4.26658708363448e-10 54064 chr1 207072725 207072725 1 + C A HNSC 207072721 + 207072701 207072741 41 AATGCAGATGGTTGTGCTCCCTTGCCTGGGTTTTACCCTGC AATGCAGATGGTTGTGCTCCCTTGACTGGGTTTTACCCTGC < 41bp 0.450276838043447 0.816352454966318 0.022147745 0.08865264 prediction 0.632704909932636 Functional Gain - IL24 ENSG00000162892 CDS Human protein_coding chr1:207072721 chr1:207072725 stopgain 0.004 0 25 hm5C_associated_SNPs_100919 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_54064 DeepMRMD:0;iRNA_m5C:0 54065 chr1 3688053 3688053 1 + T G rs79789173 3688051 + 3688031 3688071 41 CTGCAACAGTCAGAGGCCTTCCTGACCAGCAAATCCAAGAA CTGCAACAGTCAGAGGCCTTCCGGACCAGCAAATCCAAGAA < 41bp 0.50338705587723 0.819723140340887 0.20424351 0.44764954 prediction 0.632672168927314 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3688051 chr1:3688053 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_100920 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54065 DeepMRMD:0;iRNA_m5C:0 54066 chr6 43252845 43252845 1 + C A rs142158879 43252841 + 43252821 43252861 41 GCCAGGCCCCCAGCGCCGCGCAGCCCGCGCCTCCCCGCGTC GCCAGGCCCCCAGCGCCGCGCAGCACGCGCCTCCCCGCGTC < 41bp 0.54473566276631 0.861060028053964 0.1774149 0.17471159 prediction 0.632648730575308 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43252841 chr6:43252845 nonsynonymous SNV 0.080 1 25 hm5C_associated_SNPs_100921 0 0 0 0 0 exosome 0.500231641241146 0.50023164392111 0 5.35992850103639e-09 hm5C_site_54066 DeepMRMD:0;iRNA_m5C:5.35992850103639e-09 54067 chr11 60183622 60183622 1 + C A STAD 60183618 + 60183598 60183638 41 TATCTCAAGACACACCATCCCACGCCATGCCACCTCAAGAC TATCTCAAGACACACCATCCCACGACATGCCACCTCAAGAC < 41bp 0.562742387749227 0.87905045582019 0.00431028 0.0071110725 prediction 0.632616136141925 Functional Gain - MS4A14 ENSG00000166928 CDS Human protein_coding chr11:60183618 chr11:60183622 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100922 0 0 0 0 0 exosome 0.500231643921092 0.500231643921747 0 1.30984112445276e-12 hm5C_site_54067 DeepMRMD:0;iRNA_m5C:1.30984112445276e-12 54068 chrX 152770102 152770102 1 + T G LUAD 152770099 + 152770079 152770119 41 GTCCATCCGCCATGTGGCCCCTGTGGCGCCTCGTGTCTCTG GTCCATCCGCCATGTGGCCCCTGGGGCGCCTCGTGTCTCTG < 41bp 0.563269806562057 0.879571309786911 0.05191052 0.8622813 prediction 0.632603006449709 Functional Gain - BGN ENSG00000182492 CDS Human protein_coding chrX:152770099 chrX:152770102 nonsynonymous SNV 0.135 1 24 hm5C_associated_SNPs_100923 0 0 0 0 1 Cytosol 0.500231643902817 0.500231643921085 0.7245626 3.65345531605499e-11 hm5C_site_54068 DeepMRMD:0.7245626;iRNA_m5C:3.65345531605499e-11 54069 chr1 12175698 12175698 1 + C A LUAD 12175694 + 12175674 12175714 41 CCGCACCTGCGAATGTCGACCTGGCATGATCTGTGCCACAT CCGCACCTGCGAATGTCGACCTGGAATGATCTGTGCCACAT < 41bp 0.5755574619453 0.891857692155285 0.2012515 0.28721392 prediction 0.632600460419971 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12175694 chr1:12175698 synonymous SNV . 0 25 hm5C_associated_SNPs_100924 0 0 0 0 1 Endoplasmic reticulum 0.500232813181573 0.500232818816655 0 1.12701636911794e-08 hm5C_site_54069 DeepMRMD:0;iRNA_m5C:1.12701636911794e-08 54070 chr15 41865552 41865552 1 + C A THCA 41865548 + 41865528 41865568 41 TGTGTGGCTGACTTCGGACTCTCCCGGAAGATCTACAGTGG TGTGTGGCTGACTTCGGACTCTCCAGGAAGATCTACAGTGG < 41bp 0.404101532497692 0.816292360200797 0.12640265 0.91236997 prediction 0.632584720401594 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865548 chr15:41865552 synonymous SNV . 0 25 hm5C_associated_SNPs_100925 0 0 1 0 1 Ribosome 0.500231643921101 0.500231644261834 0.82473994 6.81466882923587e-10 hm5C_site_54070 DeepMRMD:0.82473994;iRNA_m5C:6.81466882923587e-10 54071 chr19 12798947 12798947 1 + C A rs145895670 12798943 + 12798923 12798963 41 CTCCAGATGGAGGCAGGCATCGACCAAGTGAAGGTGAGGGT CTCCAGATGGAGGCAGGCATCGACAAAGTGAAGGTGAGGGT < 41bp 0.531140394637766 0.847427554534317 0.8269745 0.8133267 prediction 0.632574319793102 Functional Gain - GNG14 ENSG00000132004 UTR3 Human protein_coding chr19:12798943 chr19:12798947 . . 0 25 hm5C_associated_SNPs_100926 0 0 0 0 0 unknown 0.500231643921092 0.500232661303765 0 2.03476534488267e-06 hm5C_site_54071 DeepMRMD:0;iRNA_m5C:2.03476534488267e-06 54072 chr16 84225156 84225156 1 + C A rs149894736 84225152 + 84225132 84225172 41 TGCCCCCAGCAGGGCTCAGCCTGCCGCTCAAAGACCCACCT TGCCCCCAGCAGGGCTCAGCCTGCAGCTCAAAGACCCACCT < 41bp 0.56964006927552 0.885925872912208 0.22989792 0.3853041 prediction 0.632571607273376 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84225152 chr16:84225156 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100927 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54072 DeepMRMD:0;iRNA_m5C:0 54073 chr12 98995251 98995251 1 + C A OV 98995247 + 98995227 98995267 41 AGGTCTACTTCAGACTTCCTCGCCCTCCTCCACCCGAGATG AGGTCTACTTCAGACTTCCTCGCCATCCTCCACCCGAGATG < 41bp 0.571017552596353 0.887287184321677 0.12581849 0.18325242 prediction 0.632539263450649 Functional Gain - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98995247 chr12:98995251 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_100928 0 0 1 0 0 Ribosome 0.500231644359124 0.500231643861982 0 0 hm5C_site_54073 DeepMRMD:0;iRNA_m5C:0 54074 chr5 40681181 40681181 1 + T G ESCA 40681179 + 40681159 40681199 41 ACCATCCCGGCGGTGATGTTCATCTTCGGGGTGGTGGGCAA ACCATCCCGGCGGTGATGTTCAGCTTCGGGGTGGTGGGCAA < 41bp 0.493097842094675 0.816243419489462 0.29662225 0.8046657 prediction 0.632486838978923 Functional Gain - PTGER4 ENSG00000171522 CDS Human protein_coding chr5:40681179 chr5:40681181 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_100929 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0.6093314 0 hm5C_site_54074 DeepMRMD:0.6093314;iRNA_m5C:0 54075 chr18 29046607 29046607 1 + T G rs149262687 29046605 + 29046585 29046625 41 GTTTGCAGTTCTTCACCTTCCGTGGTTGTCTCCGCTAGAAC GTTTGCAGTTCTTCACCTTCCGGGGTTGTCTCCGCTAGAAC < 41bp 0.511461301551039 0.827701686058547 0.5387015 0.9333128 prediction 0.632480769015016 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29046605 chr18:29046607 nonsynonymous SNV 0.037 2 23 hm5C_associated_SNPs_100930 0 0 0 0 0 Nucleus 0.500231674344094 0.500231643922188 0.7892226 0 hm5C_site_54075 DeepMRMD:0.7892226;iRNA_m5C:0 54076 chr17 56320396 56320396 1 + C A UCEC 56320392 + 56320372 56320412 41 TGGCTTCCCTCATCTTGCTTCAGGCTGCAGCATCTACCACA TGGCTTCCCTCATCTTGCTTCAGGATGCAGCATCTACCACA < 41bp 0.445351284360104 0.816235863260492 0.34607244 0.41193852 prediction 0.632471726520983 Functional Gain - LPO ENSG00000167419 CDS Human protein_coding chr17:56320392 chr17:56320396 nonsynonymous SNV 0.304 0 25 hm5C_associated_SNPs_100931 0 0 0 0 2 cytosol 0.500231142085447 0.500232576167593 0 2.86816429251324e-06 hm5C_site_54076 DeepMRMD:0;iRNA_m5C:2.86816429251324e-06 54077 chr1 160098487 160098487 1 + C A LUAD 160098483 + 160098463 160098503 41 AAGCGCATGGCACGGAAGAACTGCCTGGTGAAGAACCTGGA AAGCGCATGGCACGGAAGAACTGCATGGTGAAGAACCTGGA < 41bp 0.411640534197311 0.816202316796587 0.29797393 0.31926742 prediction 0.632404633593173 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160098483 chr1:160098487 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_100932 0 0 0 0 1 exosome 0.500231643921099 0.500231647967437 0 8.09267541868053e-09 hm5C_site_54077 DeepMRMD:0;iRNA_m5C:8.09267541868053e-09 54078 chr5 137206430 137206430 1 + C A OV 137206426 + 137206406 137206446 41 GCCTCCTGGACCAGAAACCTCCAGCTTCTCTAGCCAGACCA GCCTCCTGGACCAGAAACCTCCAGATTCTCTAGCCAGACCA < 41bp 0.433395497744547 0.81617595650729 0.328337 0.71914405 prediction 0.63235191301458 Functional Gain - MYOT ENSG00000120729 CDS Human protein_coding chr5:137206426 chr5:137206430 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_100933 0 0 0 0 1 Cytosol 0.500231643921159 0.500231643921345 0.4382881 3.71258579434652e-13 hm5C_site_54078 DeepMRMD:0.4382881;iRNA_m5C:3.71258579434652e-13 54079 chr6 155450637 155450637 1 + C A LUSC 155450633 + 155450613 155450653 41 TCCAGAGGTGTTGCCTACTCCACGCACAGGACAAATGCCCC TCCAGAGGTGTTGCCTACTCCACGAACAGGACAAATGCCCC < 41bp 0.435466852446087 0.816149867182868 0.33566058 0.39512894 prediction 0.632299734365736 Functional Gain - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155450633 chr6:155450637 nonsynonymous SNV 0.299 0 25 hm5C_associated_SNPs_100934 0 0 0 0 0 Cytosol 0.50023164557109 0.500231645451055 0 0 hm5C_site_54079 DeepMRMD:0;iRNA_m5C:0 54080 chr6 20402547 20402547 1 + C A STAD 20402543 + 20402523 20402563 41 GGGGGCGGCTGTCGTCGCCGCCGCCGCTGCAGCCTCCATGG GGGGGCGGCTGTCGTCGCCGCCGCAGCTGCAGCCTCCATGG < 41bp 0.458332363303085 0.816118522343408 0.32724938 0.2601564 prediction 0.632237044686817 Functional Gain - E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402543 chr6:20402547 synonymous SNV . 0 25 hm5C_associated_SNPs_100935 0 0 1 0 0 Cytosol 0.500231644130307 0.500231665634413 0 4.30082121027908e-08 hm5C_site_54080 DeepMRMD:0;iRNA_m5C:4.30082121027908e-08 54081 chr13 100637592 100637592 1 + C A STAD 100637588 + 100637568 100637608 41 GTCTTGCAGGTCCATGAGTCCTCCCCGCAGGGCTCTGAATC GTCTTGCAGGTCCATGAGTCCTCCACGCAGGGCTCTGAATC < 41bp 0.429947135791581 0.816117103022189 0.21547368 0.92239845 prediction 0.632234206044379 Functional Gain - ZIC2 ENSG00000043355 CDS Human protein_coding chr13:100637588 chr13:100637592 nonsynonymous SNV 0.724 2 25 hm5C_associated_SNPs_100936 0 0 0 0 1 Cytosol 0.500231643923035 0.500231643892007 0.8447969 0 hm5C_site_54081 DeepMRMD:0.8447969;iRNA_m5C:0 54082 chrX 34962077 34962077 1 + C A LUAD 34962073 + 34962053 34962093 41 ATGACAACCGAGGAACTCACCAAGCCTGGTAAATACCATTT ATGACAACCGAGGAACTCACCAAGACTGGTAAATACCATTT < 41bp 0.556169860748051 0.872257213988309 0.42927104 0.2985016 prediction 0.632174706480516 Functional Gain - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34962073 chrX:34962077 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_100937 0 0 0 0 0 unknown 0.500231644110666 0.500231643921102 0 0 hm5C_site_54082 DeepMRMD:0;iRNA_m5C:0 54083 chr3 160970600 160970600 1 + T G UCEC 160970597 + 160970577 160970617 41 GCTGATTTAGAGTCAGAAGTCACTGAGGGGCCAAGTGTGGT GCTGATTTAGAGTCAGAAGTCACGGAGGGGCCAAGTGTGGT < 41bp 0.478145531000011 0.816069292834788 0.07052067 0.18410176 prediction 0.632138585669577 Functional Gain - NMD3 ENSG00000169251 CDS Human protein_coding chr3:160970597 chr3:160970600 synonymous SNV . 0 24 hm5C_associated_SNPs_100938 0 0 1 0 1 Nucleus 0.500232832366366 0.500244187390417 0 2.27100481025033e-05 hm5C_site_54083 DeepMRMD:0;iRNA_m5C:2.27100481025033e-05 54084 chr2 120388402 120388402 1 + C A LUAD 120388398 + 120388378 120388418 41 GGACTCCACAACTCAGCTCTCTGGCAAAACATCAGTCTTGA GGACTCCACAACTCAGCTCTCTGGAAAAACATCAGTCTTGA < 41bp 0.574577407162187 0.890631220751417 0.077656955 0.10214296 prediction 0.63210762717846 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120388398 chr2:120388402 synonymous SNV . 0 25 hm5C_associated_SNPs_100939 0 0 0 0 2 exosome 0.500230797900412 0.500231642450295 0 1.68909976627774e-06 hm5C_site_54084 DeepMRMD:0;iRNA_m5C:1.68909976627774e-06 54085 chr19 4792864 4792864 1 + G T SARC 4792868 - 4792848 4792888 41 GGCTCCGGTTTGGGCAGGTACTCGCCCCCCTGGTGACGCAG GGCTCCGGTTTGGGCAGGTACTCGACCCCCTGGTGACGCAG < 41bp 0.551936124554844 0.867977338088091 0.8153415 0.9018928 prediction 0.632082427066493 Functional Gain - FEM1A ENSG00000141965 CDS Human protein_coding chr19:4792868 chr19:4792864 nonsynonymous SNV 0.906 0 25 hm5C_associated_SNPs_100940 0 0 0 0 0 Ribosome 0.500231643921063 0.500231643921092 0.1731026 5.81756864903582e-14 hm5C_site_54085 DeepMRMD:0.1731026;iRNA_m5C:5.81756864903582e-14 54086 chrX 37664352 37664352 1 + C A UCEC 37664348 + 37664328 37664368 41 GGGAGCAGGGATTGGGGTCACACCCTTCGCATCCATTCTCA GGGAGCAGGGATTGGGGTCACACCATTCGCATCCATTCTCA < 41bp 0.578249308028868 0.894284858957816 0.009804159 0.1796749 prediction 0.632071101857896 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37664348 chrX:37664352 synonymous SNV . 0 25 hm5C_associated_SNPs_100941 0 0 0 0 2 Endoplasmic reticulum 0.500231632298987 0.500239285725429 0 1.53068528847555e-05 hm5C_site_54086 DeepMRMD:0;iRNA_m5C:1.53068528847555e-05 54087 chr1 26581765 26581765 1 + C A OV 26581761 + 26581741 26581781 41 TTCTACTTTAGGGACCTCTCCTGCCAAGCCAAATTCTACAC TTCTACTTTAGGGACCTCTCCTGCAAAGCCAAATTCTACAC < 41bp 0.399449192760844 0.816019031680138 0.04737237 0.12410116 prediction 0.632038063360276 Functional Gain - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26581761 chr1:26581765 synonymous SNV . 0 25 hm5C_associated_SNPs_100942 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921113 0 4.04121180963557e-14 hm5C_site_54087 DeepMRMD:0;iRNA_m5C:4.04121180963557e-14 54088 chr3 44283717 44283717 1 + C A BRCA 44283713 + 44283693 44283733 41 AGGAGAATGGTGGCCCGGGCCACCCCTGGGAGAGGCGAGGT AGGAGAATGGTGGCCCGGGCCACCACTGGGAGAGGCGAGGT < 41bp 0.557813390250752 0.873830152704959 0.08122441 0.08343989 prediction 0.632033524908415 Functional Gain - TOPAZ1 ENSG00000173769 CDS Human protein_coding chr3:44283713 chr3:44283717 nonsynonymous SNV 0.092 0 25 hm5C_associated_SNPs_100943 0 0 0 0 0 exosome 0.500231642661132 0.500231643963898 0 2.60553267850128e-09 hm5C_site_54088 DeepMRMD:0;iRNA_m5C:2.60553267850128e-09 54089 chr20 39657517 39657517 1 + C A rs140822387 39657513 + 39657493 39657533 41 TGGGGTCTGTTCTCGCCGCCCGCCCGGCAGTCAGGCAGCGT TGGGGTCTGTTCTCGCCGCCCGCCAGGCAGTCAGGCAGCGT < 41bp 0.539691847211266 0.855706456297671 0.111726075 0.10908547 prediction 0.632029218172809 Functional Gain - TOP1 ENSG00000198900 UTR5 Human protein_coding chr20:39657513 chr20:39657517 . . 0 25 hm5C_associated_SNPs_100944 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643741936 0 0 hm5C_site_54089 DeepMRMD:0;iRNA_m5C:0 54090 chr4 3494914 3494914 1 + C A STAD 3494910 + 3494890 3494930 41 GTCGAGTACCAGGTGCCCACCTCCCTGCGGGCCCACTATGA GTCGAGTACCAGGTGCCCACCTCCATGCGGGCCCACTATGA < 41bp 0.407614331284133 0.816009911840591 0.5901816 0.97747713 prediction 0.632019823681182 Functional Gain - DOK7 ENSG00000175920 CDS Human protein_coding chr4:3494910 chr4:3494914 nonsynonymous SNV 0.027 2 25 hm5C_associated_SNPs_100945 0 0 0 0 0 nucleus 0.500231643921076 0.500231643926988 0.77459106 1.18247633906776e-11 hm5C_site_54090 DeepMRMD:0.77459106;iRNA_m5C:1.18247633906776e-11 54091 chr7 143657782 143657782 1 + C A BLCA 143657778 + 143657758 143657798 41 AAGGAAGAAAGAAAGCTTTCCACACGTGTGCCTCTCACCTC AAGGAAGAAAGAAAGCTTTCCACAAGTGTGCCTCTCACCTC < 41bp 0.558228810017417 0.874224285607237 0.44836465 0.5661267 prediction 0.631990951179639 Functional Gain - OR2F1 ENSG00000213215 CDS Human polymorphic_pseudogene chr7:143657778 chr7:143657782 nonsynonymous SNV 0.731 4 25 hm5C_associated_SNPs_100946 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.1322534 0 hm5C_site_54091 DeepMRMD:0.1322534;iRNA_m5C:0 54092 chrX 89177261 89177261 1 + C A HNSC 89177257 + 89177237 89177277 41 GAAGCGCAAGGGAAACTTGCCAGCCGAGTCCGTTAAGATCC GAAGCGCAAGGGAAACTTGCCAGCAGAGTCCGTTAAGATCC < 41bp 0.567044914785672 0.88301414534026 0.5561134 0.5226382 prediction 0.631938461109175 Functional Gain - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177257 chrX:89177261 synonymous SNV . 0 25 hm5C_associated_SNPs_100947 0 0 0 0 0 exosome 0.500231643858642 0.500231643921065 0 1.24847021609753e-10 hm5C_site_54092 DeepMRMD:0;iRNA_m5C:1.24847021609753e-10 54093 chr20 20350334 20350334 1 + C A LUSC 20350330 + 20350310 20350350 41 CAGGTGTTCCCCTGCAAGTACTGCCCGGCCACCTTCTACAG CAGGTGTTCCCCTGCAAGTACTGCACGGCCACCTTCTACAG < 41bp 0.435870187289589 0.815872037431557 0.28256312 0.31304926 prediction 0.631744074863114 Functional Gain - INSM1 ENSG00000173404 CDS Human protein_coding chr20:20350330 chr20:20350334 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_100948 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643913343 0 0 hm5C_site_54093 DeepMRMD:0;iRNA_m5C:0 54094 chr16 57785893 57785893 1 + T G SKCM 57785890 + 57785870 57785910 41 GGCAAGATGATGTCTGAGTTCCCTGGTCACACGGGGCCTGT GGCAAGATGATGTCTGAGTTCCCGGGTCACACGGGGCCTGT < 41bp 0.441298516071455 0.815854617346986 0.17492929 0.7331174 prediction 0.631709234693971 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57785890 chr16:57785893 synonymous SNV . 0 24 hm5C_associated_SNPs_100949 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643935015 0.4662348 2.78448375468088e-11 hm5C_site_54094 DeepMRMD:0.4662348;iRNA_m5C:2.78448375468088e-11 54095 chr9 123917154 123917154 1 + C A KIRC 123917150 + 123917130 123917170 41 TCAGGGAAGCTGACCGACTCCTGGCAGAGGCTGAGAGTGAA TCAGGGAAGCTGACCGACTCCTGGAAGAGGCTGAGAGTGAA < 41bp 0.427032173997913 0.815854134708974 0.1045647 0.2401562 prediction 0.631708269417949 Functional Gain - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123917150 chr9:123917154 nonsynonymous SNV 0.896 0 25 hm5C_associated_SNPs_100950 0 0 1 0 1 chromatin 0.500231642014049 0.500231640071066 0 0 hm5C_site_54095 DeepMRMD:0;iRNA_m5C:0 54096 chr19 1535363 1535363 1 + C A rs56073142 1535359 + 1535339 1535379 41 CCTGGGGGAGGGCTGGGGGGCACACGGGAGGTGGGTTCTTG CCTGGGGGAGGGCTGGGGGGCACAAGGGAGGTGGGTTCTTG < 41bp 0.49637852221906 0.815853988801994 0.87288404 0.89883757 prediction 0.631707977603987 Functional Gain - PLK5 ENSG00000185988 UTR3 Human protein_coding chr19:1535359 chr19:1535363 . . 0 25 hm5C_associated_SNPs_100951 0 0 0 1 0 exosome 0.500231643921094 0.500231643921092 0.05190706 0 hm5C_site_54096 DeepMRMD:0.05190706;iRNA_m5C:0 54097 chr3 129023491 129023491 1 + C A rs147986626 129023487 + 129023467 129023507 41 GCAGTGGTTGGCCACAAAGTCACCCAAAAAGGAAGACTCAA GCAGTGGTTGGCCACAAAGTCACCAAAAAAGGAAGACTCAA < 41bp 0.41656266080977 0.815849303447277 0.17583025 0.16200843 prediction 0.631698606894554 Functional Gain - HMCES ENSG00000183624 CDS Human protein_coding chr3:129023487 chr3:129023491 synonymous SNV . 0 25 hm5C_associated_SNPs_100952 0 0 1 0 1 Ribosome 0.500231649958008 0.500254026750264 0 4.47535845125024e-05 hm5C_site_54097 DeepMRMD:0;iRNA_m5C:4.47535845125024e-05 54098 chr21 38072073 38072073 1 + C A LUSC 38072069 + 38072049 38072089 41 GAAGGAGAAGTCCAAGAATGCGGCCAAGACCAGGAGGGAGA GAAGGAGAAGTCCAAGAATGCGGCAAAGACCAGGAGGGAGA < 41bp 0.45091670374483 0.815846446427539 0.474489 0.5561129 prediction 0.631692892855077 Functional Gain - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38072069 chr21:38072073 synonymous SNV . 0 25 hm5C_associated_SNPs_100953 0 0 1 0 0 nucleus 0.500231643921092 0.5002316437131 0.1122258 0 hm5C_site_54098 DeepMRMD:0.1122258;iRNA_m5C:0 54099 chr16 25175987 25175987 1 + T A HNSC 25175983 + 25175963 25176003 41 CTCCAGAGCAGTCCGCAAACCTCCTGAAGTGGGCAGCCAAC CTCCAGAGCAGTCCGCAAACCTCCAGAAGTGGGCAGCCAAC < 41bp 0.522495700597069 0.838329917531284 0.31739414 0.9574645 prediction 0.63166843386843 Functional Gain - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25175983 chr16:25175987 nonsynonymous SNV 0.925 3 25 hm5C_associated_SNPs_100954 0 0 0 0 2 Cytosol 0.500231713347124 0.500231786331957 0.914929 1.45969666576207e-07 hm5C_site_54099 DeepMRMD:0.914929;iRNA_m5C:1.45969666576207e-07 54100 chr5 137803155 137803155 1 + T G rs141771089 137803152 + 137803132 137803172 41 CCCCCCCACGAACGCCCTTACGCTTGCCCAGTGGAGTCCTG CCCCCCCACGAACGCCCTTACGCGTGCCCAGTGGAGTCCTG < 41bp 0.455096175190191 0.815774054303629 0.173666 0.28628075 prediction 0.631548108607257 Functional Gain - EGR1 ENSG00000120738 CDS Human protein_coding chr5:137803152 chr5:137803155 synonymous SNV . 0 24 hm5C_associated_SNPs_100955 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921098 0 1.04360964314765e-14 hm5C_site_54100 DeepMRMD:0;iRNA_m5C:1.04360964314765e-14 54101 chr22 42289163 42289163 1 + C A KIRP 42289159 + 42289139 42289179 41 GCCCAGAGCCTGTGTGGCCCCGAGCACAGTGCTGTTCCTGA GCCCAGAGCCTGTGTGGCCCCGAGAACAGTGCTGTTCCTGA < 41bp 0.560522910725076 0.876268021190049 0.16087115 0.31902295 prediction 0.631490220929946 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42289159 chr22:42289163 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_100956 0 0 1 1 1 Ribosome 0.500231706197434 0.50023177116682 0 1.29938771076255e-07 hm5C_site_54101 DeepMRMD:0;iRNA_m5C:1.29938771076255e-07 54102 chr1 11561763 11561763 1 + C A rs372733155 11561759 + 11561739 11561779 41 GCGGTACCAGCCCAGCATCCCGCCCCACGCGGCAGTCGCGG GCGGTACCAGCCCAGCATCCCGCCACACGCGGCAGTCGCGG < 41bp 0.419552238403715 0.815733738242535 0.10197526 0.92743915 prediction 0.63146747648507 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11561759 chr1:11561763 synonymous SNV . 0 25 hm5C_associated_SNPs_100957 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.8548783 0 hm5C_site_54102 DeepMRMD:0.8548783;iRNA_m5C:0 54103 chr5 140627413 140627413 1 + C A HNSC 140627409 + 140627389 140627429 41 GCTACCAGTACGAGGTGTGTCTGACGGGAGGCTCTGAAAGT GCTACCAGTACGAGGTGTGTCTGAAGGGAGGCTCTGAAAGT < 41bp 0.451373355897369 0.815724921789498 0.102911204 0.16424784 prediction 0.631449843578996 Functional Gain - PCDHB15 ENSG00000113248 CDS Human protein_coding chr5:140627409 chr5:140627413 nonsynonymous SNV 0.034 1 25 hm5C_associated_SNPs_100958 0 0 0 0 0 exosome 0.500231643935639 0.500231643921092 0 0 hm5C_site_54103 DeepMRMD:0;iRNA_m5C:0 54104 chr16 14859171 14859171 1 + C A UCEC 14859167 + 14859147 14859187 41 GTGTCTGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAG GTGTCTGCTCACTCCCCTTCCACCATCAGCTCCACCCTCAG < 41bp 0.40353087569691 0.815682417362899 0.1363483 0.090593725 prediction 0.631364834725797 Functional Gain - NPIPA2;NPIPA3 ENSG00000254852 CDS Human protein_coding chr16:14859167 chr16:14859171 synonymous SNV . 0 25 hm5C_associated_SNPs_100959 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0 1.33226762955019e-15 hm5C_site_54104 DeepMRMD:0;iRNA_m5C:1.33226762955019e-15 54105 chr6 41754370 41754370 1 + C A rs10947987 41754366 + 41754346 41754386 41 GCGGGGGACCCTGGCGAGGACTCTCGGCGGCGGCGGCGGCG GCGGGGGACCCTGGCGAGGACTCTAGGCGGCGGCGGCGGCG < 41bp 0.553939481071438 0.869540331630591 0.6111185 0.9086477 prediction 0.631201701118306 Functional Gain - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41754366 chr6:41754370 stopgain 0.074 0 25 hm5C_associated_SNPs_100960 0 0 0 0 0 nucleolus 0.500231643921929 0.500231643921092 0.5950584 0 hm5C_site_54105 DeepMRMD:0.5950584;iRNA_m5C:0 54106 chr19 9296617 9296617 1 + C A COAD 9296613 + 9296593 9296633 41 ATCCTGGCCATCAGCTCTGACTCCCACCTCCACACCCCCAT ATCCTGGCCATCAGCTCTGACTCCAACCTCCACACCCCCAT < 41bp 0.420459889957227 0.815583160502551 0.011747509 0.9594828 prediction 0.631166321005102 Functional Gain - OR7D2 ENSG00000188000 CDS Human protein_coding chr19:9296613 chr19:9296617 nonsynonymous SNV 0.114 1 25 hm5C_associated_SNPs_100961 0 0 0 0 0 Nucleus 0.500237759175728 0.500231461861219 0.9189656 0 hm5C_site_54106 DeepMRMD:0.9189656;iRNA_m5C:0 54107 chrX 117788733 117788733 1 + C A UCEC 117788729 + 117788709 117788749 41 ACCCCAGAGCTCAGGAAAACCTGGCTTGATAGCATGGCCAA ACCCCAGAGCTCAGGAAAACCTGGATTGATAGCATGGCCAA < 41bp 0.562314592450663 0.87789753086841 0.24960276 0.7422522 prediction 0.631165876835494 Functional Gain - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117788729 chrX:117788733 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_100962 0 0 0 0 1 Cytosol 0.5002303631928 0.500231639785143 0.4845044 2.55318468567189e-06 hm5C_site_54107 DeepMRMD:0.4845044;iRNA_m5C:2.55318468567189e-06 54108 chr17 65027937 65027937 1 + C A rs143419199 65027933 + 65027913 65027953 41 GAATGGCGGCCACGTGACCTCTTGCCGTGCCCCTTGTCATA GAATGGCGGCCACGTGACCTCTTGACGTGCCCCTTGTCATA < 41bp 0.449789846893952 0.815574574079097 0.1099599 0.1988776 prediction 0.631149148158195 Functional Gain - CACNG4 ENSG00000214167 CDS Human other chr17:65027933 chr17:65027937 stopgain . 0 25 hm5C_associated_SNPs_100963 0 0 0 0 0 Endoplasmic reticulum 0.500231643921087 0.500231643917424 0 0 hm5C_site_54108 DeepMRMD:0;iRNA_m5C:0 54109 chr17 72764334 72764334 1 + C A LUSC 72764330 + 72764310 72764350 41 GAGGCAGCCTTGGAGAGCCCCAGGCCAGCCCTGGTGAGATC GAGGCAGCCTTGGAGAGCCCCAGGACAGCCCTGGTGAGATC < 41bp 0.5679821611963 0.883547347433142 0.86674774 0.8953369 prediction 0.631130372473684 Functional Gain - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72764330 chr17:72764334 nonsynonymous SNV 0.891 0 25 hm5C_associated_SNPs_100964 0 0 1 0 2 Ribosome 0.500761797805644 0.500257827252732 0.05717832 0 hm5C_site_54109 DeepMRMD:0.05717832;iRNA_m5C:0 54110 chr13 111365324 111365324 1 + G T UCEC 111365328 - 111365308 111365348 41 CCGCAGAGTGCGCGGGAGACCTACCCATTCCGCGGCCGGAC CCGCAGAGTGCGCGGGAGACCTACACATTCCGCGGCCGGAC < 41bp 0.558437899370746 0.873985077835069 0.24804789 0.74012184 prediction 0.631094356928646 Functional Gain - ING1 ENSG00000153487 CDS Human protein_coding chr13:111365328 chr13:111365324 stopgain 0.000 0 25 hm5C_associated_SNPs_100965 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.48024368 1.11022302462516e-15 hm5C_site_54110 DeepMRMD:0.48024368;iRNA_m5C:1.11022302462516e-15 54111 chr1 158725008 158725008 1 + C A PRAD 158725004 + 158724984 158725024 41 CTGCAGATGTACTTTTTCCACTCACTTGGTATCACAGAAAG CTGCAGATGTACTTTTTCCACTCAATTGGTATCACAGAAAG < 41bp 0.563832694345949 0.879378307982719 0.040856272 0.23200762 prediction 0.631091227273541 Functional Gain - OR6K6 ENSG00000180433 CDS Human protein_coding chr1:158725004 chr1:158725008 nonsynonymous SNV 0.615 0 25 hm5C_associated_SNPs_100966 0 0 0 0 0 unknown 0.500231644285339 0.500231644761182 0 9.51686951466968e-10 hm5C_site_54111 DeepMRMD:0;iRNA_m5C:9.51686951466968e-10 54112 chr5 1038700 1038700 1 + C A rs114282654 1038696 + 1038676 1038716 41 CCCAGGCGCCCTCTGCTCTTCTGCCCTCGATGCCACATGGC CCCAGGCGCCCTCTGCTCTTCTGCACTCGATGCCACATGGC < 41bp 0.51923139493775 0.83477451137464 0.091992974 0.0860506 prediction 0.63108623287378 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1038696 chr5:1038700 synonymous SNV . 0 25 hm5C_associated_SNPs_100967 0 0 1 0 0 exosome 0.500231643919083 0.500231705971981 0 1.24105795862306e-07 hm5C_site_54112 DeepMRMD:0;iRNA_m5C:1.24105795862306e-07 54113 chr10 129535892 129535892 1 + C A LUAD 129535888 + 129535868 129535908 41 ATCGCCATGGCCATCCAGAGCGCGCCGCTGCGGAAGCTGAC ATCGCCATGGCCATCCAGAGCGCGACGCTGCGGAAGCTGAC < 41bp 0.564104924307797 0.879647839865593 0.46196097 0.4988361 prediction 0.631085831115592 Functional Gain - FOXI2 ENSG00000186766 CDS Human protein_coding chr10:129535888 chr10:129535892 nonsynonymous SNV 0.801 1 25 hm5C_associated_SNPs_100968 0 0 0 0 0 exosome 0.500231643921114 0.500231643915327 0 0 hm5C_site_54113 DeepMRMD:0;iRNA_m5C:0 54114 chr19 56163822 56163822 1 + C A STAD 56163818 + 56163798 56163838 41 AAGGACGCCGACGGGGTCCTCTGCCGGTACAAGAAGATCCT AAGGACGCCGACGGGGTCCTCTGCAGGTACAAGAAGATCCT < 41bp 0.568217933313299 0.88375363251927 0.18804836 0.39168823 prediction 0.631071398411942 Functional Gain - CCDC106 ENSG00000173581 CDS Human protein_coding chr19:56163818 chr19:56163822 synonymous SNV . 0 25 hm5C_associated_SNPs_100969 0 0 1 0 1 Cytosol 0.500231643921171 0.500231643921559 0 7.75379760398209e-13 hm5C_site_54114 DeepMRMD:0;iRNA_m5C:7.75379760398209e-13 54115 chr12 31820857 31820857 1 + T G UCEC 31820854 + 31820834 31820874 41 GCACAAAGTGGTAGAATATTCACTTTTGGAGTCTACTAGGC GCACAAAGTGGTAGAATATTCACGTTTGGAGTCTACTAGGC < 41bp 0.54217189635528 0.857706113516611 0.11394963 0.20879373 prediction 0.631068434322662 Functional Gain - ETFBKMT ENSG00000139160 CDS Human protein_coding chr12:31820854 chr12:31820857 nonsynonymous SNV 0.429 4 24 hm5C_associated_SNPs_100970 0 0 0 0 0 nucleoplasm 0.50024596719606 0.500234322779305 0 0 hm5C_site_54115 DeepMRMD:0;iRNA_m5C:0 54116 chr5 140572514 140572514 1 + C A LUAD 140572510 + 140572490 140572530 41 GAGTCAGGGATATAAATGATCACGCGCCAGTATTTCAGGAC GAGTCAGGGATATAAATGATCACGAGCCAGTATTTCAGGAC < 41bp 0.447759676090091 0.815525033745093 0.082937956 0.0781126 prediction 0.631050067490186 Functional Gain - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140572510 chr5:140572514 nonsynonymous SNV 0.106 1 25 hm5C_associated_SNPs_100971 0 0 0 0 0 exosome 0.5002316485 0.500231643884311 0 0 hm5C_site_54116 DeepMRMD:0;iRNA_m5C:0 54117 chr12 55715316 55715316 1 + C A rs75222609 55715312 + 55715292 55715332 41 AAGGAAGACTGTATTTTTCACAAGCACATGAAATGGTATGG AAGGAAGACTGTATTTTTCACAAGAACATGAAATGGTATGG < 41bp 0.519552287411537 0.83506031907593 0.16192076 0.22844419 prediction 0.631016063328785 Functional Gain - OR6C1 ENSG00000205330 CDS Human protein_coding chr12:55715312 chr12:55715316 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_100972 0 0 0 0 0 unknown 0.500231643966362 0.500231643921114 0 0 hm5C_site_54117 DeepMRMD:0;iRNA_m5C:0 54118 chr4 85525505 85525505 1 + T G KIRC 85525502 + 85525482 85525522 41 CCCTGAGATTCTCAAAAAAGCTCTATCTGGTTTATCTTCAA CCCTGAGATTCTCAAAAAAGCTCGATCTGGTTTATCTTCAA < 41bp 0.471405901632078 0.815445566586327 0.8546585 0.22060713 prediction 0.630891133172654 Functional Gain - CDS1 ENSG00000163624 CDS Human protein_coding chr4:85525502 chr4:85525505 nonsynonymous SNV 0.981 4 24 hm5C_associated_SNPs_100973 0 0 1 0 1 Endoplasmic reticulum 0.500231643921093 0.500231643921092 0 0 hm5C_site_54118 DeepMRMD:0;iRNA_m5C:0 54119 chr19 58131588 58131588 1 + T G rs199570382 58131585 + 58131565 58131605 41 TGAACAGAGCATTTCTATAGCAGTGTCACATGTTAATACTT TGAACAGAGCATTTCTATAGCAGGGTCACATGTTAATACTT < 41bp 0.448538404032324 0.815423968921474 0.29600364 0.922987 prediction 0.630847937842948 Functional Gain - ZNF134 ENSG00000213762 CDS Human protein_coding chr19:58131585 chr19:58131588 nonsynonymous SNV 0.845 1 24 hm5C_associated_SNPs_100974 0 0 1 0 1 Cytosol 0.500232094118232 0.500224530331297 0.845974 0 hm5C_site_54119 DeepMRMD:0.845974;iRNA_m5C:0 54120 chr12 5153592 5153592 1 + C A UCEC 5153588 + 5153568 5153608 41 GCCACGGCCTCGACGGCCGCCTCCCGAGGACGAGGAGGAAG GCCACGGCCTCGACGGCCGCCTCCAGAGGACGAGGAGGAAG < 41bp 0.567938712202683 0.883360414831921 0.31717527 0.9376457 prediction 0.630843405258477 Functional Gain - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5153588 chr12:5153592 synonymous SNV . 0 25 hm5C_associated_SNPs_100975 0 0 0 0 0 exosome 0.500231643921261 0.500231643974644 0.8752914 1.06766595564523e-10 hm5C_site_54120 DeepMRMD:0.8752914;iRNA_m5C:1.06766595564523e-10 54121 chr2 241569984 241569984 1 + C A LIHC 241569980 + 241569960 241570000 41 CCTGGCCCAGAGGCCACCCACCGACGTGGGGCAGGCAGAGG CCTGGCCCAGAGGCCACCCACCGAAGTGGGGCAGGCAGAGG < 41bp 0.447711911664461 0.815410551308686 0.21948531 0.38072193 prediction 0.630821102617372 Functional Gain - GPR35 ENSG00000178623 CDS Human protein_coding chr2:241569980 chr2:241569984 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_100976 0 0 1 0 0 Ribosome 0.500231643920268 0.500231643921092 0 1.64801505775358e-12 hm5C_site_54121 DeepMRMD:0;iRNA_m5C:1.64801505775358e-12 54122 chr2 27303099 27303099 1 + C A LUSC 27303095 + 27303075 27303115 41 TGGAGACATATGTCAAGTACCAGCCTTGTGCCTGGGGCCAG TGGAGACATATGTCAAGTACCAGCATTGTGCCTGGGGCCAG < 41bp 0.425985177200107 0.815385012186358 0.45643532 0.3552704 prediction 0.630770024372716 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27303095 chr2:27303099 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_100977 0 0 0 0 2 Cytosol 0.500231643922239 0.500231656746635 0 2.56487915351045e-08 hm5C_site_54122 DeepMRMD:0;iRNA_m5C:2.56487915351045e-08 54123 chr18 72776610 72776610 1 + T G rs12326956 72776607 + 72776587 72776627 41 CCAGGCGCCCACAGAGGGTACCGTGGGCTGGGCCTCGGGGA CCAGGCGCCCACAGAGGGTACCGGGGGCTGGGCCTCGGGGA < 41bp 0.50879959325114 0.82416259890889 0.86323965 0.92798185 prediction 0.630726011315499 Functional Gain - ZNF407 ENSG00000215421 UTR3 Human protein_coding chr18:72776607 chr18:72776610 . . 0 24 hm5C_associated_SNPs_100978 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0.1294844 0 hm5C_site_54123 DeepMRMD:0.1294844;iRNA_m5C:0 54124 chr16 33571935 33571935 1 + C A rs538622898 33571931 + 33571911 33571951 41 CTGTGGCTCTGCCCACGCTCCTGGCTCCCAGGGCCGGGGCA CTGTGGCTCTGCCCACGCTCCTGGATCCCAGGGCCGGGGCA < 41bp 0.506583020847737 0.821932216723623 0.26261348 0.31745064 prediction 0.630698391751772 Functional Gain - ENPP7P13 ENSG00000261580 ncRNA_exonic Human processed_pseudogene chr16:33571931 chr16:33571935 . . 0 25 hm5C_associated_SNPs_100979 0 0 0 0 0 unknown 0.500231643915213 0.500231643921097 0 1.17663656595823e-11 hm5C_site_54124 DeepMRMD:0;iRNA_m5C:1.17663656595823e-11 54125 chr22 24121481 24121481 1 + C A ACC 24121477 + 24121457 24121497 41 CACGCAGGAAGCCCCCCGGCCTGCCAGCAGCCTCAGGCCTC CACGCAGGAAGCCCCCCGGCCTGCAAGCAGCCTCAGGCCTC < 41bp 0.431262888548879 0.815339425726594 0.14747474 0.24722627 prediction 0.630678851453189 Functional Gain - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24121477 chr22:24121481 synonymous SNV . 0 25 hm5C_associated_SNPs_100980 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_54125 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 54126 chr2 128186041 128186041 1 + T G HNSC 128186038 + 128186018 128186058 41 CACCACCGACAATGACATCGCACTGCTGCACCTGGCCCAGC CACCACCGACAATGACATCGCACGGCTGCACCTGGCCCAGC < 41bp 0.436257340950833 0.815317976346218 0.09141722 0.29659045 prediction 0.630635952692436 Functional Gain - PROC ENSG00000115718 CDS Human protein_coding chr2:128186038 chr2:128186041 nonsynonymous SNV 0.285 3 24 hm5C_associated_SNPs_100981 0 0 0 0 0 nucleus 0.500231626999321 0.500231643920777 0 3.38429120283479e-08 hm5C_site_54126 DeepMRMD:0;iRNA_m5C:3.38429120283479e-08 54127 chr4 158057679 158057679 1 + C A UCEC 158057675 + 158057655 158057695 41 GGAATGACCCCAGGCTGAAGCTCCCCAGTGATTTTAGGGGT GGAATGACCCCAGGCTGAAGCTCCACAGTGATTTTAGGGGT < 41bp 0.404096457640285 0.81531638380013 0.06803435 0.5398718 prediction 0.630632767600261 Functional Gain - GLRB ENSG00000109738 CDS Human protein_coding chr4:158057675 chr4:158057679 nonsynonymous SNV 0.987 3 25 hm5C_associated_SNPs_100982 0 0 1 0 1 exosome 0.500231643911024 0.500231643924682 0.0797436 2.73154832086675e-11 hm5C_site_54127 DeepMRMD:0.0797436;iRNA_m5C:2.73154832086675e-11 54128 chr8 145583505 145583505 1 + C A rs117500243 145583501 + 145583481 145583521 41 ATTCTGTGGCCTTCTTAGCACTGGCCTTTGTGCTGGCACTG ATTCTGTGGCCTTCTTAGCACTGGACTTTGTGCTGGCACTG < 41bp 0.559072947925352 0.87438246916952 0.12884 0.1294933 prediction 0.630619042488335 Functional Gain - SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145583501 chr8:145583505 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_100983 1 0 1 0 0 Ribosome 0.50023983020836 0.50023117915966 0 0 hm5C_site_54128 DeepMRMD:0;iRNA_m5C:0 not specified not specified 54129 chr19 46174549 46174549 1 + C A CESC 46174545 + 46174525 46174565 41 CCCCGTGCCCACCCCCAGGCCTCGCCTGTAACGGGTCCTTC CCCCGTGCCCACCCCCAGGCCTCGACTGTAACGGGTCCTTC < 41bp 0.419730475020291 0.815296486699272 0.045523793 0.11775473 prediction 0.630592973398544 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46174545 chr19:46174549 nonsynonymous SNV 0.925 0 25 hm5C_associated_SNPs_100984 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_54129 DeepMRMD:0;iRNA_m5C:0 54130 chr1 8390529 8390529 1 + C A LGG 8390525 + 8390505 8390545 41 CCAGAGGAAGGCCCTGGCGACAGCCTCCCGTCGCACACGGC CCAGAGGAAGGCCCTGGCGACAGCATCCCGTCGCACACGGC < 41bp 0.433186023713294 0.815254892728233 0.07170421 0.07136306 prediction 0.630509785456466 Functional Gain - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8390525 chr1:8390529 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_100985 0 0 0 0 0 exosome 0.500231684463261 0.500231643898588 0 0 hm5C_site_54130 DeepMRMD:0;iRNA_m5C:0 54131 chr14 74823625 74823625 1 + C A LUAD 74823621 + 74823601 74823641 41 TCTTCCTTCACTCTCCCCACCTGCCGGGAGGGAGGCCCTGG TCTTCCTTCACTCTCCCCACCTGCAGGGAGGGAGGCCCTGG < 41bp 0.572838916990053 0.888091144206846 0.13075718 0.17542812 prediction 0.630504454433587 Functional Gain - VRTN ENSG00000133980 CDS Human protein_coding chr14:74823621 chr14:74823625 synonymous SNV . 0 25 hm5C_associated_SNPs_100986 0 0 0 0 0 unknown 0.500231643921093 0.500231643921534 0 8.81739126157299e-13 hm5C_site_54131 DeepMRMD:0;iRNA_m5C:8.81739126157299e-13 54132 chr16 31422152 31422152 1 + C A SKCM 31422148 + 31422128 31422168 41 ACCGGGAAGGCTGTCATCTTCACCCAGGTGTCCAGGCAATG ACCGGGAAGGCTGTCATCTTCACCAAGGTGTCCAGGCAATG < 41bp 0.401401199646994 0.815227624033674 0.031285644 0.040764123 prediction 0.630455248067348 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422148 chr16:31422152 nonsynonymous SNV 0.422 0 25 hm5C_associated_SNPs_100987 0 0 0 0 2 nucleolus 0.500231643921838 0.500231668052391 0 4.82611046681569e-08 hm5C_site_54132 DeepMRMD:0;iRNA_m5C:4.82611046681569e-08 54133 chr1 227922918 227922918 1 + A C rs2295994 227922921 - 227922901 227922941 41 CACTTCCGAGGCCTGGGGGTCGATGTCCCCGGCGTCGGCCA CACTTCCGAGGCCTGGGGGTCGAGGTCCCCGGCGTCGGCCA < 41bp 0.49938652141132 0.815217576627445 0.4139446 0.9052057 prediction 0.630435153254889 Functional Gain - JMJD4 ENSG00000081692 CDS Human protein_coding chr1:227922921 chr1:227922918 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_100988 0 0 1 0 0 Ribosome 0.500231643960514 0.500231643914202 0.8104114 0 hm5C_site_54133 DeepMRMD:0.8104114;iRNA_m5C:0 54134 chr20 58342339 58342339 1 + C A LUAD 58342335 + 58342315 58342355 41 CAAGCCTTAGCTGGGGCTGACTCCCTGGACAGTCCTCCCAG CAAGCCTTAGCTGGGGCTGACTCCATGGACAGTCCTCCCAG < 41bp 0.403590046853521 0.81519084148805 0.08422828 0.9762695 prediction 0.630381682976099 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58342335 chr20:58342339 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_100989 0 0 0 0 1 exosome 0.500231643921092 0.500231643919413 0.952539 0 hm5C_site_54134 DeepMRMD:0.952539;iRNA_m5C:0 54135 chr5 52778849 52778849 1 + C A UCEC 52778845 + 52778825 52778865 41 GGAGGACGTGAATGACAACACACTCTTCAAGTGGATGATTT GGAGGACGTGAATGACAACACACTATTCAAGTGGATGATTT < 41bp 0.4342717358289 0.815190040583311 0.104762286 0.653031 prediction 0.630380081166623 Functional Gain - FST ENSG00000134363 CDS Human protein_coding chr5:52778845 chr5:52778849 synonymous SNV . 0 25 hm5C_associated_SNPs_100990 0 0 0 0 1 nucleus 0.500014733529492 0.500231547961023 0.306062 0.000433628863062641 hm5C_site_54135 DeepMRMD:0.306062;iRNA_m5C:0.000433628863062641 54136 chr20 37356290 37356290 1 + C A LUAD 37356286 + 37356266 37356306 41 GCCATAGCCAACGCCTGCTGCGCCCCGCGCTTCCCAACGCT GCCATAGCCAACGCCTGCTGCGCCACGCGCTTCCCAACGCT < 41bp 0.428976647172177 0.815166874386195 0.11571038 0.29752347 prediction 0.63033374877239 Functional Gain - SLC32A1 ENSG00000101438 CDS Human protein_coding chr20:37356286 chr20:37356290 nonsynonymous SNV 0.947 4 25 hm5C_associated_SNPs_100991 0 0 0 0 0 exosome 0.500231643922225 0.500235972022445 0 8.65620043932758e-06 hm5C_site_54136 DeepMRMD:0;iRNA_m5C:8.65620043932758e-06 54137 chr17 7534931 7534931 1 + C A rs145273466 7534927 + 7534907 7534947 41 CTGGTTCCTGCCCTGGATGGCTGCCTGCGCCGGGATTCCTG CTGGTTCCTGCCCTGGATGGCTGCATGCGCCGGGATTCCTG < 41bp 0.520582863745395 0.835738154395039 0.25083345 0.85225236 prediction 0.630310581299287 Functional Gain - SHBG ENSG00000129214 CDS Human protein_coding chr17:7534927 chr17:7534931 nonsynonymous SNV 0.056 2 25 hm5C_associated_SNPs_100992 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921088 0.70450472 0 hm5C_site_54137 DeepMRMD:0.70450472;iRNA_m5C:0 54138 chr11 61897294 61897294 1 + C A SKCM 61897290 + 61897270 61897310 41 TCTCGGAGCAGCCAGCTGAGCTCCCGACGCCTCCGCAGCAA TCTCGGAGCAGCCAGCTGAGCTCCAGACGCCTCCGCAGCAA < 41bp 0.587750889927077 0.90290387274542 0.102214366 0.8547032 prediction 0.630305965636686 Functional Gain - INCENP ENSG00000149503 CDS Human protein_coding chr11:61897290 chr11:61897294 synonymous SNV . 0 25 hm5C_associated_SNPs_100993 0 0 1 0 1 chromatin 0.500231643921089 0.5002316439155 0.7094064 0 hm5C_site_54138 DeepMRMD:0.7094064;iRNA_m5C:0 54139 chr4 70160277 70160277 1 + T G rs6843900 70160274 + 70160254 70160294 41 AGAGAATGTTATGAAATTATCAATAATTCAACATGATCAAC AGAGAATGTTATGAAATTATCAAGAATTCAACATGATCAAC < 41bp 0.475596677383598 0.815137796683615 0.053199828 0.16101745 prediction 0.63027559336723 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70160274 chr4:70160277 nonsynonymous SNV 0.110 0 24 hm5C_associated_SNPs_100994 0 0 0 3 1 exosome 0.500230056243365 0.500231641505556 0 3.17052438125742e-06 hm5C_site_54139 DeepMRMD:0;iRNA_m5C:3.17052438125742e-06 54140 chr2 241531369 241531369 1 + C A LUSC 241531365 + 241531345 241531385 41 CCTAGGGTCCATGGGTCCTACGAGCACCTGTGGGCCGGGCA CCTAGGGTCCATGGGTCCTACGAGAACCTGTGGGCCGGGCA < 41bp 0.555526655437089 0.87064013933203 0.35321862 0.5954951 prediction 0.630226967789882 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241531365 chr2:241531369 nonsynonymous SNV 0.947 1 25 hm5C_associated_SNPs_100995 0 0 1 0 0 cytosol 0.500231643920608 0.50023164398304 0.1909902 1.24863896999727e-10 hm5C_site_54140 DeepMRMD:0.1909902;iRNA_m5C:1.24863896999727e-10 54141 chr16 84793532 84793532 1 + T G HNSC 84793529 + 84793509 84793549 41 GAATGAGTTCACTAATATGCCAGTACCTCCAAAACCCCGAC GAATGAGTTCACTAATATGCCAGGACCTCCAAAACCCCGAC < 41bp 0.453352955893042 0.815076797766449 0.03394392 0.023756087 prediction 0.630153595532898 Functional Gain - USP10 ENSG00000103194 CDS Human protein_coding chr16:84793529 chr16:84793532 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_100996 0 0 1 0 1 Cytosol 0.500231643921091 0.500231643919209 0 0 hm5C_site_54141 DeepMRMD:0;iRNA_m5C:0 54142 chr19 49646104 49646104 1 + C A CESC 49646100 + 49646080 49646120 41 CCTGGTATGTGGCCGCCTGCCGGGCCAATGTCAAGAGCGGT CCTGGTATGTGGCCGCCTGCCGGGACAATGTCAAGAGCGGT < 41bp 0.559462482582901 0.874505435404982 0.5434992 0.5537824 prediction 0.630085905644163 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49646100 chr19:49646104 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_100997 0 0 1 0 0 Cytosol 0.500229327135485 0.500214750273654 0.0205664000000001 0 hm5C_site_54142 DeepMRMD:0.0205664000000001;iRNA_m5C:0 54143 chr7 2752330 2752330 1 + C A rs111981479 2752326 + 2752306 2752346 41 GACAGAGCCGTGGACGCCCTCGACCGCTGGGAGATGTTCAC GACAGAGCCGTGGACGCCCTCGACAGCTGGGAGATGTTCAC < 41bp 0.429681873128925 0.815035309556023 0.31655908 0.6989416 prediction 0.630070619112046 Functional Gain - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2752326 chr7:2752330 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_100998 0 0 0 0 0 nucleus 0.500231643922415 0.500233116940019 0.3978832 2.94603520734071e-06 hm5C_site_54143 DeepMRMD:0.3978832;iRNA_m5C:2.94603520734071e-06 54144 chr10 38738921 38738921 1 + C A rs561686116 38738917 + 38738897 38738937 41 CCTCCCACGCTGACAGAGGTCAGCCTGAGCCCCTTGCCTCA CCTCCCACGCTGACAGAGGTCAGCATGAGCCCCTTGCCTCA < 41bp 0.527009784578474 0.842002650895247 0.08840105 0.22407836 prediction 0.629985732633546 Functional Gain - LINC00999 ENSG00000225119;ENSG00000228882 intergenic Human other chr10:38738917 chr10:38738921 . . 0 25 hm5C_associated_SNPs_100999 0 0 0 0 0 nucleoplasm 0.500231643922397 0.500231643921416 0 0 hm5C_site_54144 DeepMRMD:0;iRNA_m5C:0 54145 chr7 106508460 106508460 1 + C A LUAD 106508456 + 106508436 106508476 41 TCCGAGGAGTCCCAAGCCTTCCAGCGGCAGCTCACGGCGCT TCCGAGGAGTCCCAAGCCTTCCAGAGGCAGCTCACGGCGCT < 41bp 0.434309456292299 0.814991644562043 0.6243829 0.9043628 prediction 0.629983289124087 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508456 chr7:106508460 synonymous SNV . 0 25 hm5C_associated_SNPs_101000 0 0 0 0 0 Cytosol 0.500231643921174 0.500231643918513 0.5599598 0 hm5C_site_54145 DeepMRMD:0.5599598;iRNA_m5C:0 54146 chr2 166535367 166535367 1 + C A PAAD 166535363 + 166535343 166535383 41 AACCGAGAGCAGCAAATCCCCACGCTGAATGGCTGCCACAG AACCGAGAGCAGCAAATCCCCACGATGAATGGCTGCCACAG < 41bp 0.453989903435691 0.814976439553376 0.3776546 0.26228973 prediction 0.629952879106751 Functional Gain - CSRNP3 ENSG00000178662 CDS Human protein_coding chr2:166535363 chr2:166535367 nonsynonymous SNV 0.977 0 25 hm5C_associated_SNPs_101001 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54146 DeepMRMD:0;iRNA_m5C:0 54147 chr12 82792891 82792891 1 + C A UCEC 82792887 + 82792867 82792907 41 AGCTATTTTGCCTGATTTTTCTGGCTCTGTAATTTCTAATA AGCTATTTTGCCTGATTTTTCTGGATCTGTAATTTCTAATA < 41bp 0.568748547623188 0.883724298210179 0.55302197 0.45315808 prediction 0.629951501173982 Functional Gain - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82792887 chr12:82792891 synonymous SNV . 0 25 hm5C_associated_SNPs_101002 0 0 0 0 0 cytosol 0.500231644007438 0.500227968818299 0 0 hm5C_site_54147 DeepMRMD:0;iRNA_m5C:0 54148 chr14 102348593 102348593 1 + C A UCEC 102348589 + 102348569 102348609 41 AGATGAACCAACGTTAGAAGCAGCCTGGCCTCATCTACAGG AGATGAACCAACGTTAGAAGCAGCATGGCCTCATCTACAGG < 41bp 0.423085248970447 0.814972836801543 0.1636926 0.20161557 prediction 0.629945673603086 Functional Gain - PPP2R5C ENSG00000078304 CDS Human protein_coding chr14:102348589 chr14:102348593 synonymous SNV . 0 25 hm5C_associated_SNPs_101003 0 0 1 0 1 Cytosol 0.500231666183388 0.500231644595405 0 0 hm5C_site_54148 DeepMRMD:0;iRNA_m5C:0 54149 chr3 112968705 112968705 1 + C A COAD 112968701 + 112968681 112968721 41 GAATGAGGCCTGAGGTCACACTGGCTTGCCTCCTCCTAGCC GAATGAGGCCTGAGGTCACACTGGATTGCCTCCTCCTAGCC < 41bp 0.558879404659467 0.873849401291123 0.3395967 0.43536383 prediction 0.629939993263312 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112968701 chr3:112968705 nonsynonymous SNV 0.200 1 25 hm5C_associated_SNPs_101004 0 0 1 0 1 nucleoplasm 0.500231643921323 0.500231643929541 0 1.64372959687853e-11 hm5C_site_54149 DeepMRMD:0;iRNA_m5C:1.64372959687853e-11 54150 chr12 69652416 69652416 1 + T G BLCA 69652414 + 69652394 69652434 41 CCTTAGGTCCTCCAGGCCCACCTGGTCCACCAGGTCCTCCA CCTTAGGTCCTCCAGGCCCACCGGGTCCACCAGGTCCTCCA < 41bp 0.516304650070874 0.831264096070839 0.15851054 0.8886316 prediction 0.62991889199993 Functional Gain - CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69652414 chr12:69652416 synonymous SNV . 0 23 hm5C_associated_SNPs_101005 0 0 1 0 0 Nucleus 0.500231643921093 0.500231643921129 0.7772632 7.34967642301854e-14 hm5C_site_54150 DeepMRMD:0.7772632;iRNA_m5C:7.34967642301854e-14 54151 chr7 5338630 5338630 1 + C A rs73673108 5338626 + 5338606 5338646 41 ATCCTCCCTCCAGGAGCACCCAGCCCCGGCCCTGGCCCCCA ATCCTCCCTCCAGGAGCACCCAGCACCGGCCCTGGCCCCCA < 41bp 0.569593821739019 0.884509957713313 0.03990689 0.08468425 prediction 0.629832271948588 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338626 chr7:5338630 synonymous SNV . 0 25 hm5C_associated_SNPs_101006 0 0 0 0 1 Endoplasmic reticulum 0.500231643921527 0.500231643921093 0 0 hm5C_site_54151 DeepMRMD:0;iRNA_m5C:0 54152 chr6 111498506 111498506 1 + T G LUAD 111498503 + 111498483 111498523 41 CTTCATTGGTCATTTTGGGACACTATTTCAAGAAGCGCCTT CTTCATTGGTCATTTTGGGACACGATTTCAAGAAGCGCCTT < 41bp 0.552059907679544 0.866974908926054 0.036180586 0.046123892 prediction 0.629830002493019 Functional Gain - SLC16A10 ENSG00000112394 CDS Human protein_coding chr6:111498503 chr6:111498506 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_101007 0 0 1 0 0 cytosol 0.500231643919766 0.500231643921093 0 2.65365507345905e-12 hm5C_site_54152 DeepMRMD:0;iRNA_m5C:2.65365507345905e-12 54153 chr17 48674158 48674158 1 + C A THCA 48674154 + 48674134 48674174 41 GCCGCCTCTCATCATCCACACGGCCGCCACACCCATGTCGC GCCGCCTCTCATCATCCACACGGCAGCCACACCCATGTCGC < 41bp 0.495903822923217 0.814913364457213 0.03523907 0.15752634 prediction 0.629826728914426 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48674154 chr17:48674158 synonymous SNV . 0 25 hm5C_associated_SNPs_101008 0 0 0 0 1 exosome 0.500231170053617 0.50023164399916 0 9.478910876215e-07 hm5C_site_54153 DeepMRMD:0;iRNA_m5C:9.478910876215e-07 54154 chr9 96416722 96416722 1 + C A STAD 96416718 + 96416698 96416738 41 GAGAAGACCTTCTATCTCATCAGGCCGGCCTCGGCCAACAT GAGAAGACCTTCTATCTCATCAGGACGGCCTCGGCCAACAT < 41bp 0.572566755310057 0.887471199383985 0.9046664 0.9045786 prediction 0.629808888147855 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96416718 chr9:96416722 nonsynonymous SNV 0.804 4 25 hm5C_associated_SNPs_101009 0 0 1 0 1 chromatin 0.500229918654896 0.50023164390515 0 3.45050050665208e-06 hm5C_site_54154 DeepMRMD:0;iRNA_m5C:3.45050050665208e-06 54155 chr9 84609982 84609982 1 + C A UCEC 84609978 + 84609958 84609998 41 CCACATCCAAACCCCACTTGCCGGCGTCAGGTCAGCCTGGT CCACATCCAAACCCCACTTGCCGGAGTCAGGTCAGCCTGGT < 41bp 0.466290433168954 0.814901331223944 0.8166291 0.88432527 prediction 0.629802662447888 Functional Gain - SPATA31D1 ENSG00000214929 CDS Human protein_coding chr9:84609978 chr9:84609982 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101010 0 0 0 0 0 exosome 0.50023164392989 0.500231643361624 0.13539234 0 hm5C_site_54155 DeepMRMD:0.13539234;iRNA_m5C:0 54156 chr9 135764615 135764615 1 + C A rs572962425 135764611 + 135764591 135764631 41 AGGTCCTCTTTGAGCCACATCCGGCTCCAGTGCCACGCCTG AGGTCCTCTTTGAGCCACATCCGGATCCAGTGCCACGCCTG < 41bp 0.480278193664705 0.814899715199087 0.786255 0.8859069 prediction 0.629799430398174 Functional Gain - SPACA9 ENSG00000165698 UTR3 Human protein_coding chr9:135764611 chr9:135764615 . . 0 25 hm5C_associated_SNPs_101011 0 0 0 0 0 exosome 0.500230946896489 0.500213973596728 0.1993038 0 hm5C_site_54156 DeepMRMD:0.1993038;iRNA_m5C:0 54157 chr15 65903730 65903730 1 + C A rs75265841 65903726 + 65903706 65903746 41 TCGAGCCTTGGCTGGGTTTCCTGCCGTGTCTCTCTGCATTG TCGAGCCTTGGCTGGGTTTCCTGCAGTGTCTCTCTGCATTG < 41bp 0.545702643027917 0.860553568258236 0.14271751 0.36993673 prediction 0.629701850460637 Functional Gain - INTS14;SLC24A1 ENSG00000074621;ENSG00000138614 upstream Human other chr15:65903726 chr15:65903730 . . 0 25 hm5C_associated_SNPs_101012 0 0 1 0 0 unknown 0.500231643871329 0.500232171473186 0 1.05520371418422e-06 hm5C_site_54157 DeepMRMD:0;iRNA_m5C:1.05520371418422e-06 54158 chr3 191179054 191179054 1 + C A HNSC 191179050 + 191179030 191179070 41 AAGTCTCTGATCAGAACAATCTCCCTGGGAAAGGAGCTACA AAGTCTCTGATCAGAACAATCTCCATGGGAAAGGAGCTACA < 41bp 0.568978200541257 0.883815061389756 0.2960958 0.95146227 prediction 0.629673721696999 Functional Gain - PYDC2 ENSG00000253548 CDS Human protein_coding chr3:191179050 chr3:191179054 nonsynonymous SNV 0.097 2 25 hm5C_associated_SNPs_101013 0 0 0 0 0 unknown 0.500234902275398 0.500231644025898 0.90292454 0 hm5C_site_54158 DeepMRMD:0.90292454;iRNA_m5C:0 54159 chr1 248570230 248570230 1 + C A LUAD 248570226 + 248570206 248570246 41 CTGCCATGTACACCTACATGCTGCCACATTCTTACCACAAG CTGCCATGTACACCTACATGCTGCAACATTCTTACCACAAG < 41bp 0.442813956748337 0.814802399878454 0.016554415 0.01616314 prediction 0.629604799756908 Functional Gain - OR2T1 ENSG00000175143 CDS Human protein_coding chr1:248570226 chr1:248570230 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_101014 0 0 0 0 0 unknown 0.500233167757018 0.500231742102282 0 0 hm5C_site_54159 DeepMRMD:0;iRNA_m5C:0 54160 chr17 30687743 30687743 1 + C A KIRP 30687739 + 30687719 30687759 41 GTTATATTCCTCCAATGGCACAGCCAGGACTGCCACCAGTA GTTATATTCCTCCAATGGCACAGCAAGGACTGCCACCAGTA < 41bp 0.421875136481846 0.814780120734819 0.20307425 0.7254161 prediction 0.629560241469638 Functional Gain - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30687739 chr17:30687743 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_101015 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921093 0.4508322 2.22044604925031e-16 hm5C_site_54160 DeepMRMD:0.4508322;iRNA_m5C:2.22044604925031e-16 54161 chr3 155838505 155838505 1 + C A LUAD 155838501 + 155838481 155838521 41 TGTAGCAGGGAAAGACAAATCTCCCAAGAAAGCCTCAGAAA TGTAGCAGGGAAAGACAAATCTCCAAAGAAAGCCTCAGAAA < 41bp 0.443960509227494 0.814742081854232 0.19767877 0.95932084 prediction 0.629484163708464 Functional Gain - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:155838501 chr3:155838505 synonymous SNV . 0 25 hm5C_associated_SNPs_101016 0 0 0 0 0 nucleoplasm 0.500231643921076 0.500231652585138 0.91864168 1.73281247128898e-08 hm5C_site_54161 DeepMRMD:0.91864168;iRNA_m5C:1.73281247128898e-08 54162 chrY 22930744 22930744 1 + C A LGG 22930740 + 22930720 22930760 41 TGTGGGGACAAAGGGAATTCCACACCTGGTGACTCATGATG TGTGGGGACAAAGGGAATTCCACAACTGGTGACTCATGATG < 41bp 0.411873682714084 0.814712279459071 0.19215965 0.23125139 prediction 0.629424558918142 Functional Gain - RPS4Y2 ENSG00000157828 CDS Human other chrY:22930740 chrY:22930744 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_101017 0 0 0 0 1 exosome 0.500231643772427 0.500253028256154 0 4.27689674540321e-05 hm5C_site_54162 DeepMRMD:0;iRNA_m5C:4.27689674540321e-05 54163 chr22 18640467 18640467 1 + C A GBM 18640463 + 18640443 18640483 41 TTTGGGCTCCTGAGGCAAATCTGTCAGTCCATCCTGGCTGA TTTGGGCTCCTGAGGCAAATCTGTAAGTCCATCCTGGCTGA < 41bp 0.573722637245922 0.88838933827249 0.111671925 0.34817874 prediction 0.629333402053135 Functional Gain - USP18 ENSG00000184979 CDS Human protein_coding chr22:18640463 chr22:18640467 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_101018 0 0 1 0 0 Ribosome 0.500231643921089 0.500231643921092 0 7.105427357601e-15 hm5C_site_54163 DeepMRMD:0;iRNA_m5C:7.105427357601e-15 54164 chr10 77167870 77167870 1 + C A rs533708261 77167866 + 77167846 77167886 41 CAGCAAAGGCTAGCAAAACCCCGCCGCGGCGCGCTCGGCCC CAGCAAAGGCTAGCAAAACCCCGCAGCGGCGCGCTCGGCCC < 41bp 0.524568060454302 0.839206766050281 0.25462207 0.33305466 prediction 0.629277411191958 Functional Gain - ZNF503-AS2 ENSG00000237149 ncRNA_exonic Human antisense chr10:77167866 chr10:77167870 . . 0 25 hm5C_associated_SNPs_101019 0 0 1 0 0 unknown 0.500231643921099 0.500231643921091 0 0 hm5C_site_54164 DeepMRMD:0;iRNA_m5C:0 54165 chr20 31606541 31606541 1 + C A ESCA 31606537 + 31606517 31606557 41 GGGTACCGAGGGCTCCATGGCCACCGTGGGCCTCTCCCAGC GGGTACCGAGGGCTCCATGGCCACAGTGGGCCTCTCCCAGC < 41bp 0.424063647107222 0.814597525325779 0.33042598 0.51320183 prediction 0.629195050651558 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31606537 chr20:31606541 synonymous SNV . 0 25 hm5C_associated_SNPs_101020 0 0 1 0 2 cytosol 0.500231643917865 0.500231643921087 0.0264036599999999 6.44484465794903e-12 hm5C_site_54165 DeepMRMD:0.0264036599999999;iRNA_m5C:6.44484465794903e-12 54166 chr1 70503868 70503868 1 + C A LUAD 70503864 + 70503844 70503884 41 CCAGCGGGAGGCTGTTCCCCCAGGCAATATACCACAGCGTC CCAGCGGGAGGCTGTTCCCCCAGGAAATATACCACAGCGTC < 41bp 0.461197386594316 0.814535478672475 0.8691267 0.90223944 prediction 0.629070957344951 Functional Gain - LRRC7 ENSG00000033122 CDS Human protein_coding chr1:70503864 chr1:70503868 synonymous SNV . 0 25 hm5C_associated_SNPs_101021 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0.0662254799999999 0 hm5C_site_54166 DeepMRMD:0.0662254799999999;iRNA_m5C:0 54167 chr12 105501598 105501598 1 + C A rs187427903 105501594 + 105501574 105501614 41 GGGTGATGGCGGTGGAGACTCTGTCCCCGGACTGGGAGTTT GGGTGATGGCGGTGGAGACTCTGTACCCGGACTGGGAGTTT < 41bp 0.451182708322143 0.814505362456161 0.2128492 0.12801561 prediction 0.629010724912322 Functional Gain - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105501594 chr12:105501598 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_101022 0 0 1 0 0 unknown 0.500228490244736 0.500231639448224 0 6.29840697530248e-06 hm5C_site_54167 DeepMRMD:0;iRNA_m5C:6.29840697530248e-06 54168 chr9 82323614 82323614 1 + C A UCEC 82323610 + 82323590 82323630 41 AGAGCTGACCAGCCCCGGAGCGGCCTACGCTGGGCTCCACA AGAGCTGACCAGCCCCGGAGCGGCATACGCTGGGCTCCACA < 41bp 0.418727769190314 0.814486083793883 0.5757754 0.7181605 prediction 0.628972167587765 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323610 chr9:82323614 synonymous SNV . 0 25 hm5C_associated_SNPs_101023 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.2847702 0 hm5C_site_54168 DeepMRMD:0.2847702;iRNA_m5C:0 54169 chr2 98355952 98355952 1 + C A UCEC 98355948 + 98355928 98355968 41 CAGCACACAGAAGGCTGAGGCTGCCTGTGCCTGAGCTCCCG CAGCACACAGAAGGCTGAGGCTGCATGTGCCTGAGCTCCCG < 41bp 0.544312671153799 0.858792882232731 0.10881293 0.8820931 prediction 0.628960422157864 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98355948 chr2:98355952 synonymous SNV . 0 25 hm5C_associated_SNPs_101024 0 0 0 0 0 exosome 0.500231644425437 0.500231609304305 0.7641862 0 hm5C_site_54169 DeepMRMD:0.7641862;iRNA_m5C:0 54170 chr1 207648357 207648357 1 + T G LUSC 207648354 + 207648334 207648374 41 CTTGGAGCGGGCCTTCCCCACAGTGCTTACGATCTCCTCCT CTTGGAGCGGGCCTTCCCCACAGGGCTTACGATCTCCTCCT < 41bp 0.57202012114511 0.886491163482408 0.41430974 0.9257996 prediction 0.628942084674596 Functional Gain - CR2 ENSG00000117322 CDS Human protein_coding chr1:207648354 chr1:207648357 nonsynonymous SNV 0.114 4 24 hm5C_associated_SNPs_101025 0 0 0 0 0 Endoplasmic reticulum 0.500231644253634 0.500231643921092 0.8515992 0 hm5C_site_54170 DeepMRMD:0.8515992;iRNA_m5C:0 54171 chr7 106508431 106508431 1 + C A LUAD 106508427 + 106508407 106508447 41 AGATCCACCTGGTGCAGCGGCACCCGCCCTCCGAGGAGTCC AGATCCACCTGGTGCAGCGGCACCAGCCCTCCGAGGAGTCC < 41bp 0.411387947835103 0.81443994105336 0.096591115 0.114367574 prediction 0.628879882106719 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508427 chr7:106508431 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_101026 0 0 0 0 0 Cytosol 0.500231643925273 0.500231643921092 0 0 hm5C_site_54171 DeepMRMD:0;iRNA_m5C:0 54172 chr2 48010496 48010496 1 + C A rs34014629 48010492 + 48010472 48010512 41 GCCGCCGCTGCCCCCGGGGCCTCTCCTTCCCCAGGCGGGGA GCCGCCGCTGCCCCCGGGGCCTCTACTTCCCCAGGCGGGGA < 41bp 0.463873538157393 0.814410800589311 0.31503624 0.55226594 prediction 0.628821601178623 Functional Gain - MSH6 ENSG00000116062 CDS Human protein_coding chr2:48010492 chr2:48010496 nonsynonymous SNV 0.613 1 25 hm5C_associated_SNPs_101027 0 0 1 0 0 Nucleus 0.500231643919559 0.500231643921145 0.10453188 3.1703528691196e-12 hm5C_site_54172 DeepMRMD:0.10453188;iRNA_m5C:3.1703528691196e-12 54173 chr19 49110431 49110431 1 + C A LUAD 49110427 + 49110407 49110447 41 GGTCCGGTCATCAACAAAGGCTGCCTGCGAGCCACCAGCTG GGTCCGGTCATCAACAAAGGCTGCATGCGAGCCACCAGCTG < 41bp 0.572618218467032 0.887026421368563 0.05099076 0.0947462 prediction 0.628816405803062 Functional Gain - SPACA4 ENSG00000177202 CDS Human protein_coding chr19:49110427 chr19:49110431 nonsynonymous SNV 0.037 0 25 hm5C_associated_SNPs_101028 0 0 0 0 0 unknown 0.500231643902736 0.500231617965573 0 0 hm5C_site_54173 DeepMRMD:0;iRNA_m5C:0 54174 chr17 39847294 39847294 1 + C A rs3209306 39847290 + 39847270 39847310 41 TCCCTCATTTAAACAGAGGTCAAGCAATAGGCGCCTGGCAG TCCCTCATTTAAACAGAGGTCAAGAAATAGGCGCCTGGCAG < 41bp 0.486347533587838 0.814382314307348 0.07864851 0.23893183 prediction 0.628764628614696 Functional Gain - EIF1 ENSG00000173812 UTR3 Human protein_coding chr17:39847290 chr17:39847294 . . 0 25 hm5C_associated_SNPs_101029 0 0 1 1 0 Endoplasmic reticulum 0.500231643921092 0.500231643921094 0 2.22044604925031e-15 hm5C_site_54174 DeepMRMD:0;iRNA_m5C:2.22044604925031e-15 54175 chr2 233322545 233322545 1 + C A LUSC 233322541 + 233322521 233322561 41 GGAACCGCACTGAGCTCATGCAGGCGTCCCTGGACCAGTCT GGAACCGCACTGAGCTCATGCAGGAGTCCCTGGACCAGTCT < 41bp 0.566657699787928 0.881022309483086 0.8819086 0.885372 prediction 0.628729219390317 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322541 chr2:233322545 nonsynonymous SNV 0.005 2 25 hm5C_associated_SNPs_101030 0 0 0 0 1 Cytosol 0.50023164273593 0.500231643920876 0.00692680000000001 2.36989361468432e-09 hm5C_site_54175 DeepMRMD:0.00692680000000001;iRNA_m5C:2.36989361468432e-09 54176 chr15 102312119 102312119 1 + C A HNSC 102312115 + 102312095 102312135 41 GAGTGCAGTGAGAGCCTCCCCTGCCCCTGCCTGCCCACCCT GAGTGCAGTGAGAGCCTCCCCTGCACCTGCCTGCCCACCCT < 41bp 0.515106005388874 0.829465708999516 0.07519287 0.18987513 prediction 0.628719407221283 Functional Gain - LOC100128108;OR4F6 ENSG00000259236;ENSG00000259660 ncRNA_exonic Human other chr15:102312115 chr15:102312119 . . 0 25 hm5C_associated_SNPs_101031 0 0 0 0 0 unknown 0.500231643921092 0.500231643921082 0 0 hm5C_site_54176 DeepMRMD:0;iRNA_m5C:0 54177 chr12 1943505 1943505 1 + T G GBM 1943503 + 1943483 1943523 41 AAGGACATGCGGATGGTCCCCATGGAGATGTTCAACTACTG AAGGACATGCGGATGGTCCCCAGGGAGATGTTCAACTACTG < 41bp 0.49095204329445 0.814322926856874 0.26419187 0.90424806 prediction 0.628645853713748 Functional Gain - LRTM2 ENSG00000166159 CDS Human protein_coding chr12:1943503 chr12:1943505 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_101032 0 0 0 0 1 exosome 0.500231643921683 0.500231643921092 0.80849612 0 hm5C_site_54177 DeepMRMD:0.80849612;iRNA_m5C:0 54178 chrX 30268767 30268767 1 + C A HNSC 30268763 + 30268743 30268783 41 TTAGGGGATACTCCCACAAGCTCCCCTGCTGCTGGCATTCC TTAGGGGATACTCCCACAAGCTCCACTGCTGCTGGCATTCC < 41bp 0.422095031612909 0.814285736800448 0.03486222 0.36181402 prediction 0.628571473600896 Functional Gain - MAGEB1 ENSG00000214107 CDS Human protein_coding chrX:30268763 chrX:30268767 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101033 0 0 0 0 0 nucleolus 0.500231643921092 0.500231643921093 0 4.44089209850063e-16 hm5C_site_54178 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 54179 chr21 34923471 34923471 1 + C A UCEC 34923467 + 34923447 34923487 41 GGGCGCCAGAGTTGCCTGGGCAGCCTGTGGCAACTGTGGCG GGGCGCCAGAGTTGCCTGGGCAGCATGTGGCAACTGTGGCG < 41bp 0.453651245791849 0.814284144261396 0.47768986 0.4123935 prediction 0.628568288522793 Functional Gain - SON ENSG00000159140 CDS Human protein_coding chr21:34923467 chr21:34923471 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101034 0 0 1 0 0 Nucleus 0.500231643921006 0.500231644035029 0 2.2804624855155e-10 hm5C_site_54179 DeepMRMD:0;iRNA_m5C:2.2804624855155e-10 54180 chr7 127896244 127896244 1 + C A rs76601079 127896240 + 127896220 127896260 41 TTAGCAGGTGGTCCTGAGACCTGACAAGCACTGCTAGGCGA TTAGCAGGTGGTCCTGAGACCTGAAAAGCACTGCTAGGCGA < 41bp 0.524604755962379 0.838871269075438 0.17441145 0.24708003 prediction 0.628533026226117 Functional Gain - LEP ENSG00000174697 UTR3 Human protein_coding chr7:127896240 chr7:127896244 . . 0 25 hm5C_associated_SNPs_101035 2 0 0 0 0 exosome 0.500231418800491 0.500231661441834 0 4.85282687590072e-07 hm5C_site_54180 DeepMRMD:0;iRNA_m5C:4.85282687590072e-07 Leptin deficiency or dysfunction Leptin deficiency or dysfunction 54181 chr12 49688914 49688914 1 + C A rs539620163 49688910 + 49688890 49688930 41 CCGCAGGGCTATAAAGCCGCCTCGCAGCGGTCTGCGGCTCC CCGCAGGGCTATAAAGCCGCCTCGAAGCGGTCTGCGGCTCC < 41bp 0.520834944394132 0.835067655291401 0.13765532 0.8733711 prediction 0.628465421794537 Functional Gain - LOC101927267 ENSG00000258334 ncRNA_intronic Human antisense chr12:49688910 chr12:49688914 . . 0 25 hm5C_associated_SNPs_101036 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.7467422 0 hm5C_site_54181 DeepMRMD:0.7467422;iRNA_m5C:0 54182 chr7 143633044 143633044 1 + C A SKCM 143633040 + 143633020 143633060 41 AAGGAAGAAAGAAAGCCTTCCACACGTGTGCCTCTCACCTC AAGGAAGAAAGAAAGCCTTCCACAAGTGTGCCTCTCACCTC < 41bp 0.559631504925298 0.873836622505112 0.5802292 0.65108347 prediction 0.628410235159627 Functional Gain - OR2F2 ENSG00000221910 CDS Human protein_coding chr7:143633040 chr7:143633044 nonsynonymous SNV 0.392 4 25 hm5C_associated_SNPs_101037 0 0 0 0 0 unknown 0.50023164392109 0.500231643921098 0.14170854 1.48769885299771e-14 hm5C_site_54182 DeepMRMD:0.14170854;iRNA_m5C:1.48769885299771e-14 54183 chr12 21615791 21615791 1 + C A READ 21615787 + 21615767 21615807 41 TCCTGGCAGCTGAGCCCAGTCTGGCAGCAGGTAAGCTAGCA TCCTGGCAGCTGAGCCCAGTCTGGAAGCAGGTAAGCTAGCA < 41bp 0.570878294974229 0.88506436961351 0.12700114 0.22171134 prediction 0.628372149278561 Functional Gain - PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21615787 chr12:21615791 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101038 0 0 0 0 1 Cytosol 0.500231643921096 0.500231643921126 0 5.99520433297585e-14 hm5C_site_54183 DeepMRMD:0;iRNA_m5C:5.99520433297585e-14 54184 chr5 1246086 1246086 1 + C A OV 1246082 + 1246062 1246102 41 GCGCTTGCTCAGCTGCTCACCCGGCGGAGGCGGACGTGGAG GCGCTTGCTCAGCTGCTCACCCGGAGGAGGCGGACGTGGAG < 41bp 0.534476849623572 0.848662859101497 0.6285228 0.7584996 prediction 0.628372018955849 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1246082 chr5:1246086 synonymous SNV . 0 25 hm5C_associated_SNPs_101039 0 0 0 0 0 unknown 0.500231642922676 0.500231641750305 0.2599536 0 hm5C_site_54184 DeepMRMD:0.2599536;iRNA_m5C:0 54185 chr17 18344639 18344639 1 + T G OV 18344636 + 18344616 18344656 41 TGGCCTACCTGAGGAAGAACCACTAGGAGGTGTGGTTGCTG TGGCCTACCTGAGGAAGAACCACGAGGAGGTGTGGTTGCTG < 41bp 0.523430388072037 0.837600918454415 0.5189401 0.8362901 prediction 0.628341060764756 Functional Gain - KRT16P1 ENSG00000214856 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:18344636 chr17:18344639 . . 0 24 hm5C_associated_SNPs_101040 0 0 0 1 1 unknown 0.500231643936405 0.500231643921093 0.6347 0 hm5C_site_54185 DeepMRMD:0.6347;iRNA_m5C:0 54186 chr4 103809914 103809914 1 + C A rs223311 103809910 + 103809890 103809930 41 GAGTTCAAGGCCAGGCTGGGCAACCTAGTGCTCCGCCTCTG GAGTTCAAGGCCAGGCTGGGCAACATAGTGCTCCGCCTCTG < 41bp 0.511557894452392 0.825725592097294 0.6326583 0.42162755 prediction 0.628335395289805 Functional Gain - CISD2 ENSG00000145354 UTR3 Human protein_coding chr4:103809910 chr4:103809914 . . 0 25 hm5C_associated_SNPs_101041 0 0 0 0 0 Ribosome 0.500231643924044 0.500231644104004 0 3.59918983505736e-10 hm5C_site_54186 DeepMRMD:0;iRNA_m5C:3.59918983505736e-10 54187 chr1 147380618 147380618 1 + C A UCEC 147380614 + 147380594 147380634 41 TCCTGTACGGGTTCCGGATCCTGCCTCTGTACCGCTGCAGC TCCTGTACGGGTTCCGGATCCTGCATCTGTACCGCTGCAGC < 41bp 0.582921199655424 0.897058558271011 0.095920295 0.23499441 prediction 0.628274717231175 Functional Gain - GJA8 ENSG00000121634 CDS Human protein_coding chr1:147380614 chr1:147380618 nonsynonymous SNV 0.995 5 25 hm5C_associated_SNPs_101042 0 0 0 0 0 unknown 0.500231643999724 0.500615344404456 0 0.000767400809463803 hm5C_site_54187 DeepMRMD:0;iRNA_m5C:0.000767400809463803 54188 chr5 148586606 148586606 1 + C A OV 148586602 + 148586582 148586622 41 TGCAAGGAGGAGATCAAGCACGGCCAGTCACTCCTGGCTCT TGCAAGGAGGAGATCAAGCACGGCAAGTCACTCCTGGCTCT < 41bp 0.579976565262291 0.894104573817808 0.63652945 0.53237927 prediction 0.628256017111033 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148586602 chr5:148586606 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_101043 0 0 0 0 2 nucleus 0.500231643937725 0.500231636843508 0 0 hm5C_site_54188 DeepMRMD:0;iRNA_m5C:0 54189 chrX 40464916 40464916 1 + T G LUAD 40464913 + 40464893 40464933 41 AATGATCGCCTTGGCCTTGGCTGTGATTATCACCTCTTACA AATGATCGCCTTGGCCTTGGCTGGGATTATCACCTCTTACA < 41bp 0.462411155644565 0.814115637125711 0.06266314 0.40439633 prediction 0.628231274251421 Functional Gain - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40464913 chrX:40464916 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_101044 0 0 1 0 0 Ribosome 0.500231643915511 0.500231643921092 0 1.11619602449764e-11 hm5C_site_54189 DeepMRMD:0;iRNA_m5C:1.11619602449764e-11 54190 chr15 45448056 45448056 1 + C A THCA 45448052 + 45448032 45448072 41 GCCATCATGTATGTCTTTGCCTCCCACCACTTCCGCCGCCG GCCATCATGTATGTCTTTGCCTCCAACCACTTCCGCCGCCG < 41bp 0.396394506087358 0.814074807543977 0.19572496 0.9623095 prediction 0.628149615087954 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45448052 chr15:45448056 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101045 0 0 0 0 2 chromatin 0.500231643231151 0.500231630476383 0.924619 0 hm5C_site_54190 DeepMRMD:0.924619;iRNA_m5C:0 54191 chr6 7727396 7727396 1 + C A GBM 7727392 + 7727372 7727412 41 TCCTCCTCGGGCTTCCTGTACCGGCGGCTCAAGACGCAGGA TCCTCCTCGGGCTTCCTGTACCGGAGGCTCAAGACGCAGGA < 41bp 0.459141098719109 0.814068278543295 0.9030381 0.92900187 prediction 0.628136557086589 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7727392 chr6:7727396 synonymous SNV . 0 25 hm5C_associated_SNPs_101046 0 0 0 0 0 Ribosome 0.500231643921093 0.500231643921092 0.0519275400000001 0 hm5C_site_54191 DeepMRMD:0.0519275400000001;iRNA_m5C:0 54192 chr8 103573026 103573026 1 + C A rs150771034 103573022 + 103573002 103573042 41 TGCAGCCCCTGCAACCCCTGCAGCCCCTGCAACCCGTGCAG TGCAGCCCCTGCAACCCCTGCAGCACCTGCAACCCGTGCAG < 41bp 0.438986769991014 0.814062558476248 0.42398334 0.5364175 prediction 0.628125116952496 Functional Gain - ODF1 ENSG00000155087 CDS Human protein_coding chr8:103573022 chr8:103573026 nonsynonymous SNV 0.015 2 25 hm5C_associated_SNPs_101047 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.072835 0 hm5C_site_54192 DeepMRMD:0.072835;iRNA_m5C:0 54193 chr7 89748940 89748940 1 + C A rs566623192 89748936 + 89748916 89748956 41 CGGTGCGGGCCTCCCCCTTCCCCCCCGCCTCCGCCCCGGAG CGGTGCGGGCCTCCCCCTTCCCCCACGCCTCCGCCCCGGAG < 41bp 0.467611906000515 0.81405259487233 0.13901648 0.28923798 prediction 0.62810518974466 Functional Gain - DPY19L2P4 ENSG00000235436 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:89748936 chr7:89748940 . . 0 25 hm5C_associated_SNPs_101048 0 0 0 0 0 unknown 0.500231643921097 0.500231643921092 0 0 hm5C_site_54193 DeepMRMD:0;iRNA_m5C:0 54194 chr1 17728075 17728075 1 + C A UCEC 17728071 + 17728051 17728091 41 TCTTCCCTGTCTGCCCCGACCGACCCTCGGACCCAGTAGGA TCTTCCCTGTCTGCCCCGACCGACACTCGGACCCAGTAGGA < 41bp 0.48030773597547 0.81404764545645 0.37230694 0.43342948 prediction 0.628095290912899 Functional Gain - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17728071 chr1:17728075 . . 0 25 hm5C_associated_SNPs_101049 0 0 0 0 0 exosome 0.500231636418383 0.500231643923504 0 1.50102432705523e-08 hm5C_site_54194 DeepMRMD:0;iRNA_m5C:1.50102432705523e-08 54195 chr15 59499173 59499173 1 + C A LIHC 59499169 + 59499149 59499189 41 ACTGTGCCTGTTGTGCGGGCCAGCCAGAGAGTGAGCTCGGT ACTGTGCCTGTTGTGCGGGCCAGCAAGAGAGTGAGCTCGGT < 41bp 0.538424688250906 0.852444987446315 0.14345858 0.23414996 prediction 0.628040598390819 Functional Gain - LDHAL6B ENSG00000171989 CDS Human protein_coding chr15:59499169 chr15:59499173 nonsynonymous SNV 0.037 0 25 hm5C_associated_SNPs_101050 0 0 0 0 0 unknown 0.500231644013306 0.500232176316833 0 1.06460705318057e-06 hm5C_site_54195 DeepMRMD:0;iRNA_m5C:1.06460705318057e-06 54196 chr1 154408493 154408493 1 + C A BLCA 154408489 + 154408469 154408509 41 GTCATCCACGACGCCTGGAGCGGCCTGAGGCACGTGGTGCA GTCATCCACGACGCCTGGAGCGGCATGAGGCACGTGGTGCA < 41bp 0.577999888883361 0.892018655980457 0.8489183 0.89909375 prediction 0.628037534194192 Functional Gain - IL6R ENSG00000160712 CDS Human protein_coding chr1:154408489 chr1:154408493 nonsynonymous SNV 0.039 0 25 hm5C_associated_SNPs_101051 0 0 0 0 2 Cytosol 0.500231643919304 0.50023000964526 0.1003509 0 hm5C_site_54196 DeepMRMD:0.1003509;iRNA_m5C:0 54197 chr9 107266774 107266774 1 + C A rs1949755 107266770 + 107266750 107266790 41 GGACATCTGGTACTCCTCTTCTGCCCTCTCTCCAATGCTGG GGACATCTGGTACTCCTCTTCTGCACTCTCTCCAATGCTGG < 41bp 0.445470734232698 0.813970101191525 0.016320467 0.022717118 prediction 0.627940202383051 Functional Gain - OR13F1 ENSG00000186881 CDS Human protein_coding chr9:107266770 chr9:107266774 synonymous SNV . 0 25 hm5C_associated_SNPs_101052 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_54197 DeepMRMD:0;iRNA_m5C:0 54198 chr2 239039222 239039222 1 + C A LUAD 239039218 + 239039198 239039238 41 CAGGGGGATGAGAAGCCATCCACCCGGCCCCTGCAGGACAC CAGGGGGATGAGAAGCCATCCACCAGGCCCCTGCAGGACAC < 41bp 0.433100228570299 0.813959405670113 0.07514402 0.09581098 prediction 0.627918811340226 Functional Gain - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239039218 chr2:239039222 synonymous SNV . 0 25 hm5C_associated_SNPs_101053 0 0 0 0 0 exosome 0.500231643706406 0.500231643921093 0 4.29373647747866e-10 hm5C_site_54198 DeepMRMD:0;iRNA_m5C:4.29373647747866e-10 54199 chr5 121761214 121761214 1 + C A rs147419360 121761210 + 121761190 121761230 41 CACTGAGAAGTTGACTCCAGCAGGCCTGGCCATTAAGGTGA CACTGAGAAGTTGACTCCAGCAGGACTGGCCATTAAGGTGA < 41bp 0.551069329058555 0.865013938070908 0.9131373 0.9148159 prediction 0.627889218024707 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121761210 chr5:121761214 synonymous SNV . 0 25 hm5C_associated_SNPs_101054 0 0 0 0 1 exosome 0.500231643928725 0.500231644159231 0.00335719999999995 4.61012561459029e-10 hm5C_site_54199 DeepMRMD:0.00335719999999995;iRNA_m5C:4.61012561459029e-10 54200 chr7 144062274 144062274 1 + C A GBM 144062270 + 144062250 144062290 41 CCTGGTAGCTCAAGGATCTACAGGCCTCTACCCCCACTACC CCTGGTAGCTCAAGGATCTACAGGACTCTACCCCCACTACC < 41bp 0.557272680424764 0.871210448436168 0.352767 0.3343507 prediction 0.627875536022808 Functional Gain - ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144062270 chr7:144062274 nonsynonymous SNV 0.042 4 25 hm5C_associated_SNPs_101055 0 0 0 0 0 exosome 0.500231643921094 0.500231643921093 0 0 hm5C_site_54200 DeepMRMD:0;iRNA_m5C:0 54201 chr16 28878696 28878696 1 + C A LUAD 28878692 + 28878672 28878712 41 CATCCCCTGCTCTTCTATCACAGACGTCCGGACAACCACAG CATCCCCTGCTCTTCTATCACAGAAGTCCGGACAACCACAG < 41bp 0.425682594120206 0.813877800467162 0.9354928 0.9267609 prediction 0.627755600934324 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28878692 chr16:28878696 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_101056 0 0 1 0 3 Cytosol 0.50023164437012 0.500231643921097 0 0 hm5C_site_54201 DeepMRMD:0;iRNA_m5C:0 54202 chr4 110415815 110415815 1 + C A UCEC 110415811 + 110415791 110415831 41 AGCAGTCCTGCTCCTGATCCCGCCCCTGAACCTGATCCTGC AGCAGTCCTGCTCCTGATCCCGCCACTGAACCTGATCCTGC < 41bp 0.415319737543478 0.813861614274826 0.0815649 0.5531588 prediction 0.627723228549653 Functional Gain - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110415811 chr4:110415815 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_101057 0 0 1 0 1 Cytosol 0.500231644024817 0.500231643921145 0.1063176 0 hm5C_site_54202 DeepMRMD:0.1063176;iRNA_m5C:0 54203 chr3 131101009 131101009 1 + C A SARC 131101005 + 131100985 131101025 41 CGAGGAGCTGGGCGAAGCGGCTGCCGCTTTCCGCGTGGAGC CGAGGAGCTGGGCGAAGCGGCTGCAGCTTTCCGCGTGGAGC < 41bp 0.441713943392826 0.813841066340003 0.270621 0.2761253 prediction 0.627682132680007 Functional Gain - NUDT16 ENSG00000198585 CDS Human protein_coding chr3:131101005 chr3:131101009 synonymous SNV . 0 25 hm5C_associated_SNPs_101058 0 0 1 0 0 Ribosome 0.500231643921092 0.50023164395501 0 6.78355149830168e-11 hm5C_site_54203 DeepMRMD:0;iRNA_m5C:6.78355149830168e-11 54204 chr21 46021023 46021023 1 + C A rs201619325 46021019 + 46020999 46021039 41 TGCTGTGTGCCCATCTGCTGCAAGCCTGTCTGCTCTGGGAT TGCTGTGTGCCCATCTGCTGCAAGACTGTCTGCTCTGGGAT < 41bp 0.538680225959152 0.852514033877727 0.29975092 0.42024758 prediction 0.627667615837151 Functional Gain - KRTAP10-7 ENSG00000205441 CDS Human other chr21:46021019 chr21:46021023 nonsynonymous SNV 0.201 0 25 hm5C_associated_SNPs_101059 0 0 0 0 0 unknown 0.500234928833873 0.500239801272372 0 9.74487699800797e-06 hm5C_site_54204 DeepMRMD:0;iRNA_m5C:9.74487699800797e-06 54205 chr20 43536065 43536065 1 + C A rs115177153 43536061 + 43536041 43536081 41 ACCTGTGAATAACTGCACTCCAGCCTGGGCAACATAGCGAG ACCTGTGAATAACTGCACTCCAGCATGGGCAACATAGCGAG < 41bp 0.564168987620921 0.877981226373372 0.09531477 0.09004316 prediction 0.627624477504901 Functional Gain - YWHAB ENSG00000166913 UTR3 Human protein_coding chr20:43536061 chr20:43536065 . . 0 25 hm5C_associated_SNPs_101060 0 0 1 0 0 Ribosome 0.500231628607099 0.500231643918711 0 3.0623224178683e-08 hm5C_site_54205 DeepMRMD:0;iRNA_m5C:3.0623224178683e-08 54206 chr4 71255546 71255546 1 + C A SARC 71255542 + 71255522 71255562 41 CCTATGGTCCAGGGATATTTCCACCACCCCCTCCTCAACCC CCTATGGTCCAGGGATATTTCCACAACCCCCTCCTCAACCC < 41bp 0.563826541013483 0.877607254744511 0.20669949 0.19236752 prediction 0.627561427462056 Functional Gain - SMR3B ENSG00000171201 CDS Human protein_coding chr4:71255542 chr4:71255546 nonsynonymous SNV 0.055 2 25 hm5C_associated_SNPs_101061 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_54206 DeepMRMD:0;iRNA_m5C:0 54207 chrX 55650539 55650539 1 + C A STAD 55650535 + 55650515 55650555 41 AGGACAAAGTGGTAGAGTCTCTGCCATCTTCCTCCAGTGAG AGGACAAAGTGGTAGAGTCTCTGCAATCTTCCTCCAGTGAG < 41bp 0.566810662487293 0.880591055078565 0.11492771 0.35149974 prediction 0.627560785182544 Functional Gain - FOXR2 ENSG00000189299 CDS Human protein_coding chrX:55650535 chrX:55650539 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_101062 0 0 0 0 0 unknown 0.500231643921093 0.500231643676656 0 0 hm5C_site_54207 DeepMRMD:0;iRNA_m5C:0 54208 chr11 61405853 61405853 1 + C A rs11230759 61405849 + 61405829 61405869 41 GCCCACATGAAGCAGGCCCCCAGCCCCTGACAGGCCATGAC GCCCACATGAAGCAGGCCCCCAGCACCTGACAGGCCATGAC < 41bp 0.540452307210821 0.854162016679069 0.2227695 0.19690004 prediction 0.627419418936496 Functional Gain - RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61405849 chr11:61405853 . . 0 25 hm5C_associated_SNPs_101063 0 0 0 0 0 unknown 0.500231643922173 0.500231643921116 0 0 hm5C_site_54208 DeepMRMD:0;iRNA_m5C:0 54209 chr11 124440034 124440034 1 + T G OV 124440031 + 124440011 124440051 41 GGAGAATGGCTGCAGGAAATCACTCTACAGTGACAGAGTTC GGAGAATGGCTGCAGGAAATCACGCTACAGTGACAGAGTTC < 41bp 0.459011400582069 0.813698666617187 0.098661244 0.13116175 prediction 0.627397333234374 Functional Gain - OR8A1 ENSG00000196119 CDS Human protein_coding chr11:124440031 chr11:124440034 nonsynonymous SNV 0.874 2 24 hm5C_associated_SNPs_101064 0 0 0 0 0 exosome 0.500231643614478 0.50023164588758 0 4.54620452394749e-09 hm5C_site_54209 DeepMRMD:0;iRNA_m5C:4.54620452394749e-09 54210 chr7 72848991 72848991 1 + C A rs147849239 72848987 + 72848967 72849007 41 GTGCGCACCGCGCTGCGGGCCCGGCGTCGAGGTGTTCTGGT GTGCGCACCGCGCTGCGGGCCCGGAGTCGAGGTGTTCTGGT < 41bp 0.545676839338226 0.859372438436064 0.39266697 0.5187584 prediction 0.627391198195677 Functional Gain - FZD9 ENSG00000188763 CDS Human protein_coding chr7:72848987 chr7:72848991 synonymous SNV . 0 25 hm5C_associated_SNPs_101065 0 0 0 0 0 exosome 0.500231441905174 0.500231801621862 0.0375167999999999 7.19433375984124e-07 hm5C_site_54210 DeepMRMD:0.0375167999999999;iRNA_m5C:7.19433375984124e-07 54211 chr5 140574156 140574156 1 + C A LUAD 140574152 + 140574132 140574172 41 CTACCTGCCTCTCCCGGAGGCGGCCCCGGCCCAGGCCCAGG CTACCTGCCTCTCCCGGAGGCGGCACCGGCCCAGGCCCAGG < 41bp 0.553489987098409 0.867178548342905 0.51155853 0.48584402 prediction 0.62737712248899 Functional Gain - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140574152 chr5:140574156 synonymous SNV . 0 25 hm5C_associated_SNPs_101066 0 0 0 0 0 exosome 0.500231643921092 0.500231643858561 0 0 hm5C_site_54211 DeepMRMD:0;iRNA_m5C:0 54212 chr5 140604395 140604395 1 + C A COAD 140604391 + 140604371 140604411 41 AAAACCGAGTACAACATAACCGTGCTGCTCTCTGACGTCAA AAAACCGAGTACAACATAACCGTGATGCTCTCTGACGTCAA < 41bp 0.443712176530947 0.813664278702637 0.103755504 0.16856691 prediction 0.627328557405273 Functional Gain - PCDHB14 ENSG00000120327 CDS Human protein_coding chr5:140604391 chr5:140604395 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_101067 0 0 0 0 0 exosome 0.500231643921079 0.500231643968017 0 9.38764621594146e-11 hm5C_site_54212 DeepMRMD:0;iRNA_m5C:9.38764621594146e-11 54213 chr4 120325179 120325179 1 + T G rs149969151 120325176 + 120325156 120325196 41 GCCCACTGCTTCTTCCTGTCCACTAGGCCACAGCTGCCCTC GCCCACTGCTTCTTCCTGTCCACGAGGCCACAGCTGCCCTC < 41bp 0.523642898041458 0.837284071227762 0.08475378 0.23789757 prediction 0.627282346372608 Functional Gain - FABP2;LINC01061 ENSG00000249244;ENSG00000260091 intergenic Human other chr4:120325176 chr4:120325179 . . 0 24 hm5C_associated_SNPs_101068 0 0 0 0 0 unknown 0.500231646531344 0.500231643921092 0 0 hm5C_site_54213 DeepMRMD:0;iRNA_m5C:0 54214 chrX 48458893 48458893 1 + T G UCEC 48458890 + 48458870 48458910 41 TGACATCCTCGTGTCCACCTCACTGGATGCCACCATGCGCA TGACATCCTCGTGTCCACCTCACGGGATGCCACCATGCGCA < 41bp 0.425906693385603 0.813585414403656 0.1939823 0.39257413 prediction 0.627170828807313 Functional Gain - WDR13 ENSG00000101940 CDS Human protein_coding chrX:48458890 chrX:48458893 nonsynonymous SNV 0.979 4 24 hm5C_associated_SNPs_101069 0 0 1 0 0 Ribosome 0.500230026893184 0.500231643918956 0 3.2340515454532e-06 hm5C_site_54214 DeepMRMD:0;iRNA_m5C:3.2340515454532e-06 54215 chr5 148748023 148748023 1 + C A LGG 148748019 + 148747999 148748039 41 CAGGCCCATCCCCTCTATGGCTCCCGCCCCACGCTCCCGAG CAGGCCCATCCCCTCTATGGCTCCAGCCCCACGCTCCCGAG < 41bp 0.40109424516703 0.813495745683201 0.021357805 0.19412503 prediction 0.626991491366401 Functional Gain - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148748019 chr5:148748023 nonsynonymous SNV 0.132 0 25 hm5C_associated_SNPs_101070 0 0 0 0 0 Ribosome 0.500231643923176 0.500231643921092 0 0 hm5C_site_54215 DeepMRMD:0;iRNA_m5C:0 54216 chr17 33321390 33321390 1 + T G HNSC 33321388 + 33321368 33321408 41 ATGGAGAGCGAGTCCAGGTGCATAAGAATGGAGACCACTTC ATGGAGAGCGAGTCCAGGTGCAGAAGAATGGAGACCACTTC < 41bp 0.492040205188945 0.813465181271307 0.13818112 0.35581037 prediction 0.626930362542614 Functional Gain - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33321388 chr17:33321390 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_101071 0 0 1 0 1 Cytosol 0.500231641191195 0.500231643921092 0 5.45979550459208e-09 hm5C_site_54216 DeepMRMD:0;iRNA_m5C:5.45979550459208e-09 54217 chr11 105948438 105948438 1 + A C PRAD 105948441 - 105948421 105948461 41 GAACCGTTTGGCAGGGAAAACCATACACTGAAAGCGGACCT GAACCGTTTGGCAGGGAAAACCAGACACTGAAAGCGGACCT < 41bp 0.474058581126175 0.813428148577529 0.37944156 0.8763752 prediction 0.626856297155058 Functional Gain - AASDHPPT ENSG00000149313 CDS Human protein_coding chr11:105948441 chr11:105948438 nonsynonymous SNV 0.095 0 24 hm5C_associated_SNPs_101072 0 0 0 0 0 Ribosome 0.50023164391869 0.500232057453869 0.7527504 8.27070357756199e-07 hm5C_site_54217 DeepMRMD:0.7527504;iRNA_m5C:8.27070357756199e-07 54218 chr6 89790649 89790649 1 + C A rs144161245 89790645 + 89790625 89790665 41 CTCCGTCCCGCAGCGGGAGCCGCTCGTCCTGGGTGGCCGCC CTCCGTCCCGCAGCGGGAGCCGCTAGTCCTGGGTGGCCGCC < 41bp 0.452723907488764 0.813418192688075 0.23805901 0.5024604 prediction 0.626836385376151 Functional Gain - PNRC1 ENSG00000146278 CDS Human protein_coding chr6:89790645 chr6:89790649 synonymous SNV . 0 25 hm5C_associated_SNPs_101073 0 0 1 0 0 Cytosol 0.500231643921089 0.500231643921094 0.00492080000000006 1.02140518265514e-14 hm5C_site_54218 DeepMRMD:0.00492080000000006;iRNA_m5C:1.02140518265514e-14 54219 chr8 38260158 38260158 1 + C A UCS 38260154 + 38260134 38260174 41 AGGAACAACTGCGACAACAGCTCACGGAGGCAAGTAGCAGC AGGAACAACTGCGACAACAGCTCAAGGAGGCAAGTAGCAGC < 41bp 0.428448169855937 0.813386676581136 0.13956293 0.14707005 prediction 0.626773353162272 Functional Gain - LETM2 ENSG00000165046 CDS Human protein_coding chr8:38260154 chr8:38260158 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_101074 0 0 0 0 0 exosome 0.500231643921088 0.500231643921093 0 9.54791801177635e-15 hm5C_site_54219 DeepMRMD:0;iRNA_m5C:9.54791801177635e-15 54220 chr4 40356102 40356102 1 + C A rs200543085 40356098 + 40356078 40356118 41 GGCCGAGGCCCGGCCGGTGCCACACTGGGCCAGGGTGGTCA GGCCGAGGCCCGGCCGGTGCCACAATGGGCCAGGGTGGTCA < 41bp 0.577324219139905 0.890707757419282 0.07151693 0.6928471 prediction 0.626767076558754 Functional Gain - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40356098 chr4:40356102 nonsynonymous SNV 0.882 1 25 hm5C_associated_SNPs_101075 0 0 0 0 0 nucleus 0.500231887891989 0.500231659894032 0.3856942 0 hm5C_site_54220 DeepMRMD:0.3856942;iRNA_m5C:0 54221 chr14 52781680 52781680 1 + C A LUAD 52781676 + 52781656 52781696 41 GGCCCTGGAGCGCTACCTCTCGATCGGGCACCCCTACTTCT GGCCCTGGAGCGCTACCTCTCGATAGGGCACCCCTACTTCT < 41bp 0.562145236889424 0.875526906603849 0.12401548 0.11603013 prediction 0.626763339428851 Functional Gain - PTGER2 ENSG00000125384 CDS Human protein_coding chr14:52781676 chr14:52781680 synonymous SNV . 0 25 hm5C_associated_SNPs_101076 0 0 0 0 0 exosome 0.500231643921092 0.500231644072644 0 3.03103542265148e-10 hm5C_site_54221 DeepMRMD:0;iRNA_m5C:3.03103542265148e-10 54222 chr19 42222121 42222121 1 + C A LUSC 42222117 + 42222097 42222137 41 GGGGTGAACCTCAGCCTCTCCTGCCATGCAGCCTCTAACCC GGGGTGAACCTCAGCCTCTCCTGCAATGCAGCCTCTAACCC < 41bp 0.401134715804399 0.813367354357853 0.09375468 0.26961994 prediction 0.626734708715706 Functional Gain - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42222117 chr19:42222121 nonsynonymous SNV 0.206 0 25 hm5C_associated_SNPs_101077 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_54222 DeepMRMD:0;iRNA_m5C:0 54223 chr2 70315393 70315393 1 + C A GBM 70315389 + 70315369 70315409 41 TCATGCTGGAGACGCTCTCCCAGTCTCCGCAAGGGAGAGTC TCATGCTGGAGACGCTCTCCCAGTATCCGCAAGGGAGAGTC < 41bp 0.560211893559441 0.87357587264164 0.17766243 0.18903524 prediction 0.626727958164398 Functional Gain - PCBP1 ENSG00000169564 CDS Human protein_coding chr2:70315389 chr2:70315393 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_101078 0 0 1 0 0 Cytosol 0.500231643903033 0.500231643921091 0 3.61155549910563e-11 hm5C_site_54223 DeepMRMD:0;iRNA_m5C:3.61155549910563e-11 54224 chr2 241531477 241531477 1 + C A rs3792268 241531473 + 241531453 241531493 41 GGAAGCGGAGGCCAGCAGGACAGGCCAGGCCGCTGGGAGCA GGAAGCGGAGGCCAGCAGGACAGGACAGGCCGCTGGGAGCA < 41bp 0.568750029844698 0.882108731225434 0.82984775 0.8557401 prediction 0.626717402761473 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241531473 chr2:241531477 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_101079 0 0 1 0 1 cytosol 0.500231643921094 0.500231643921092 0.0517847 0 hm5C_site_54224 DeepMRMD:0.0517847;iRNA_m5C:0 54225 chr13 24233255 24233255 1 + C A GBM 24233251 + 24233231 24233271 41 CCAGCCCACGGGACACGGCGCTGGCTGCCGTTATCTGCAGC CCAGCCCACGGGACACGGCGCTGGATGCCGTTATCTGCAGC < 41bp 0.579951551716136 0.893298020102965 0.3194166 0.41310093 prediction 0.626692936773658 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24233251 chr13:24233255 nonsynonymous SNV 0.053 4 25 hm5C_associated_SNPs_101080 0 0 1 0 2 cytosol 0.500231643921093 0.500231643921093 0 0 hm5C_site_54225 DeepMRMD:0;iRNA_m5C:0 54226 chr2 114258187 114258187 1 + T G rs551666959 114258184 + 114258164 114258204 41 AGCCAGGTGGGAGTGGGGAGCGATCCGCAGCTGCTCACTCC AGCCAGGTGGGAGTGGGGAGCGAGCCGCAGCTGCTCACTCC < 41bp 0.486774751619756 0.813329978918238 0.88585484 0.9360907 prediction 0.626659957836476 Functional Gain - FOXD4L1 ENSG00000184492 UTR3 Human protein_coding chr2:114258184 chr2:114258187 . . 0 24 hm5C_associated_SNPs_101081 0 0 0 0 0 exosome 0.500231643921092 0.500231643921091 0.10047172 0 hm5C_site_54226 DeepMRMD:0.10047172;iRNA_m5C:0 54227 chr11 56043410 56043410 1 + C A LUAD 56043406 + 56043386 56043426 41 CAAAAATGTTGGTCAATTTCCTGGCAAAAAATAAATCTATT CAAAAATGTTGGTCAATTTCCTGGAAAAAAATAAATCTATT < 41bp 0.533681334403668 0.846998018881908 0.86154425 0.3078804 prediction 0.626633368956481 Functional Gain - OR5T1 ENSG00000181698 CDS Human protein_coding chr11:56043406 chr11:56043410 nonsynonymous SNV 0.102 0 25 hm5C_associated_SNPs_101082 0 0 0 0 0 unknown 0.500231652128031 0.500231643918595 0 0 hm5C_site_54227 DeepMRMD:0;iRNA_m5C:0 54228 chr4 1388836 1388836 1 + C A rs148951627 1388832 + 1388812 1388852 41 GTGCCCATGTGGAGTGCCCGCCTGCTCACACGTGCCAACGT GTGCCCATGTGGAGTGCCCGCCTGATCACACGTGCCAACGT < 41bp 0.48094001660811 0.813315683317959 0.1249277 0.10179737 prediction 0.626631366635918 Functional Gain - CRIPAK ENSG00000179979 CDS Human protein_coding chr4:1388832 chr4:1388836 stopgain 0.054 0 25 hm5C_associated_SNPs_101083 0 0 0 0 0 chromatin 0.500231762052004 0.500232399080135 0 1.27405626249022e-06 hm5C_site_54228 DeepMRMD:0;iRNA_m5C:1.27405626249022e-06 54229 chr20 30602789 30602789 1 + C A LUSC 30602785 + 30602765 30602805 41 GTAGGAGCAGCGTGAGCCGCCGGCCCCTGCACTCGATGCCC GTAGGAGCAGCGTGAGCCGCCGGCACCTGCACTCGATGCCC < 41bp 0.574820123124217 0.888133202255913 0.15841094 0.39120495 prediction 0.626626158263393 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602785 chr20:30602789 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_101084 0 0 0 0 2 exosome 0.50023164392663 0.500231635960022 0 0 hm5C_site_54229 DeepMRMD:0;iRNA_m5C:0 54230 chr8 53853265 53853265 1 + C A LUAD 53853261 + 53853241 53853281 41 GGTGTGCCTCCTCTGCTGGACGCCCTACCACCTGAGCACCG GGTGTGCCTCCTCTGCTGGACGCCATACCACCTGAGCACCG < 41bp 0.44419791323009 0.813281371022458 0.0073648393 0.11897954 prediction 0.626562742044916 Functional Gain - NPBWR1 ENSG00000183729 CDS Human protein_coding chr8:53853261 chr8:53853265 synonymous SNV . 0 25 hm5C_associated_SNPs_101085 0 0 0 0 0 exosome 0.500232605825169 0.500231643909832 0 0 hm5C_site_54230 DeepMRMD:0;iRNA_m5C:0 54231 chr22 35691106 35691106 1 + C A rs16995562 35691102 + 35691082 35691122 41 ATGAGATTCTCTGCCAACACCAAGCTCTGAGTTAACTGTGC ATGAGATTCTCTGCCAACACCAAGATCTGAGTTAACTGTGC < 41bp 0.527368197560335 0.840600597305241 0.23687392 0.40669695 prediction 0.626464799489812 Functional Gain - HMGXB4 ENSG00000100281 UTR3 Human protein_coding chr22:35691102 chr22:35691106 . . 0 25 hm5C_associated_SNPs_101086 0 0 1 1 0 Ribosome 0.500231643906548 0.500231643921141 0 2.91853208267412e-11 hm5C_site_54231 DeepMRMD:0;iRNA_m5C:2.91853208267412e-11 54232 chr6 170190418 170190418 1 + T G rs3823467 170190415 + 170190395 170190435 41 GCGGGGCACGGGGTGGCGCTCCCTGGTAAAGCAGCGGCCAG GCGGGGCACGGGGTGGCGCTCCCGGGTAAAGCAGCGGCCAG < 41bp 0.540203721773555 0.853431984195825 0.27936226 0.87389815 prediction 0.626456524844541 Functional Gain - LINC00242;LINC00574 ENSG00000229214;ENSG00000231690 ncRNA_exonic Human other chr6:170190415 chr6:170190418 . . 0 24 hm5C_associated_SNPs_101087 0 0 0 0 1 unknown 0.500231647633695 0.500231643921092 0.7477963 0 hm5C_site_54232 DeepMRMD:0.7477963;iRNA_m5C:0 54233 chr11 118405257 118405257 1 + C A rs143259331 118405253 + 118405233 118405273 41 CTCCCAGTGCTGGGCTATATCTATCGAGTGTCCAGCGTGAG CTCCCAGTGCTGGGCTATATCTATAGAGTGTCCAGCGTGAG < 41bp 0.440341238528448 0.813217257055177 0.067076 0.101563394 prediction 0.626434514110353 Functional Gain - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118405253 chr11:118405257 synonymous SNV . 0 25 hm5C_associated_SNPs_101088 0 0 1 0 1 Nucleus 0.500231643995158 0.500231643921133 0 0 hm5C_site_54233 DeepMRMD:0;iRNA_m5C:0 54234 chr19 58370674 58370674 1 + T G SKCM 58370671 + 58370651 58370691 41 ACTGGACAGACAGCTTATCCCTGTGAGGAGTGCGGGAAATC ACTGGACAGACAGCTTATCCCTGGGAGGAGTGCGGGAAATC < 41bp 0.445252573929397 0.813211241139522 0.061435282 0.28399152 prediction 0.626422482279044 Functional Gain - ZNF587 ENSG00000198466 CDS Human protein_coding chr19:58370671 chr19:58370674 nonsynonymous SNV 0.001 4 24 hm5C_associated_SNPs_101089 0 0 0 0 0 Nucleus 0.500231655157791 0.500231676877694 0 4.34398061965879e-08 hm5C_site_54234 DeepMRMD:0;iRNA_m5C:4.34398061965879e-08 54235 chr10 102739993 102739993 1 + C A rs149116714 102739989 + 102739969 102740009 41 ATGGCTCGGCCCGTTGTGCCCACACGTGGACGGCCCCTGCT ATGGCTCGGCCCGTTGTGCCCACAAGTGGACGGCCCCTGCT < 41bp 0.422542302775533 0.813169403134757 0.8338159 0.8460331 prediction 0.626338806269514 Functional Gain - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102739989 chr10:102739993 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_101090 0 0 0 0 0 nucleoplasm 0.500231644036392 0.500231643921092 0.0244343999999999 0 hm5C_site_54235 DeepMRMD:0.0244343999999999;iRNA_m5C:0 54236 chr21 34443344 34443344 1 + C A rs369461854 34443340 + 34443320 34443360 41 CCCGGCCAGCCTGGGCCTGGCCGCCGTGCAGGCGCAATTCT CCCGGCCAGCCTGGGCCTGGCCGCAGTGCAGGCGCAATTCT < 41bp 0.461429519878454 0.813156106476005 0.62985337 0.81332284 prediction 0.626312212952009 Functional Gain - OLIG1 ENSG00000184221 CDS Human protein_coding chr21:34443340 chr21:34443344 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101091 0 0 0 0 0 exosome 0.500231643921223 0.500231643847567 0.36693894 0 hm5C_site_54236 DeepMRMD:0.36693894;iRNA_m5C:0 54237 chr11 55798279 55798279 1 + C A UCEC 55798275 + 55798255 55798295 41 GACCGCTATGCAGCCATCTGCAACCCACTGCTCTATACTAC GACCGCTATGCAGCCATCTGCAACACACTGCTCTATACTAC < 41bp 0.455250005497757 0.81312294810106 0.18383238 0.19899651 prediction 0.626245896202119 Functional Gain - OR5AS1 ENSG00000181785 CDS Human protein_coding chr11:55798275 chr11:55798279 nonsynonymous SNV 0.055 3 25 hm5C_associated_SNPs_101092 0 0 0 0 0 unknown 0.500231643900487 0.500231637971384 0 0 hm5C_site_54237 DeepMRMD:0;iRNA_m5C:0 54238 chr6 24145935 24145935 1 + C A LUAD 24145931 + 24145911 24145951 41 AACAGTGCTCTGGACATGTACAAGCTGGCAGGAGCTGTTCT AACAGTGCTCTGGACATGTACAAGATGGCAGGAGCTGTTCT < 41bp 0.566463288914418 0.879566295011617 0.20192853 0.26898265 prediction 0.626206012194398 Functional Gain - NRSN1 ENSG00000152954 CDS Human protein_coding chr6:24145931 chr6:24145935 nonsynonymous SNV 0.977 4 25 hm5C_associated_SNPs_101093 0 0 0 0 0 Nucleus 0.50024088662299 0.500233627995958 0 0 hm5C_site_54238 DeepMRMD:0;iRNA_m5C:0 54239 chr15 72103837 72103837 1 + C A UCEC 72103833 + 72103813 72103853 41 TGCCCCTCAGGCGTGAGCCCCTCGCTCCAGTGCCGCGTGTG TGCCCCTCAGGCGTGAGCCCCTCGATCCAGTGCCGCGTGTG < 41bp 0.456102015381469 0.813100712743321 0.5187929 0.8956542 prediction 0.626201425486642 Functional Gain - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72103833 chr15:72103837 . 0.995 1 25 hm5C_associated_SNPs_101094 0 0 0 0 1 nucleus 0.500231629509415 0.500231844456318 0.7537226 4.29893804998471e-07 hm5C_site_54239 DeepMRMD:0.7537226;iRNA_m5C:4.29893804998471e-07 54240 chr2 88469834 88469834 1 + T G rs188854408 88469831 + 88469811 88469851 41 TCCCACTGCGAAGCTGAGAACCCTAGCTCCGGCCCCGACCG TCCCACTGCGAAGCTGAGAACCCGAGCTCCGGCCCCGACCG < 41bp 0.525091498832718 0.838178415217865 0.5231006 0.8622068 prediction 0.626173832770295 Functional Gain - THNSL2 ENSG00000144115 upstream Human protein_coding chr2:88469831 chr2:88469834 . . 0 24 hm5C_associated_SNPs_101095 0 0 0 0 0 exosome 0.500231643908839 0.500231643824962 0.6782124 0 hm5C_site_54240 DeepMRMD:0.6782124;iRNA_m5C:0 Parkinson's disease 54241 chr22 31032952 31032952 1 + T G rs150781327 31032950 + 31032930 31032970 41 GCCGCCATGGGTCCGCTCTGCCTGGGGGCCGCCTGCAGCCT GCCGCCATGGGTCCGCTCTGCCGGGGGGCCGCCTGCAGCCT < 41bp 0.481723859518866 0.81304683589586 0.4827723 0.9204953 prediction 0.62609367179172 Functional Gain - SLC35E4 ENSG00000100036 CDS Human protein_coding chr22:31032950 chr22:31032952 nonsynonymous SNV 0.986 3 23 hm5C_associated_SNPs_101096 0 0 0 0 0 exosome 0.50023164395275 0.500232076389106 0.8409906 8.64872711892062e-07 hm5C_site_54241 DeepMRMD:0.8409906;iRNA_m5C:8.64872711892062e-07 54242 chr19 45208901 45208901 1 + C A COAD 45208897 + 45208877 45208917 41 GCCATCCTCCAGGATTCCACCACCCGCACAGGCTGCACCAT GCCATCCTCCAGGATTCCACCACCAGCACAGGCTGCACCAT < 41bp 0.40949597675722 0.813036935897393 0.07600132 0.1395719 prediction 0.626073871794786 Functional Gain - CEACAM16 ENSG00000213892 CDS Human protein_coding chr19:45208897 chr19:45208901 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101097 0 0 0 0 1 exosome 0.500231643918363 0.500231642107636 0 0 hm5C_site_54242 DeepMRMD:0;iRNA_m5C:0 54243 chr20 56139608 56139608 1 + C A UCEC 56139604 + 56139584 56139624 41 CCAGTGCCCCATCATTGATGCTGCCTGGGAGTCTCCGGAAG CCAGTGCCCCATCATTGATGCTGCATGGGAGTCTCCGGAAG < 41bp 0.400281451524194 0.813033915143581 0.07846138 0.28966454 prediction 0.626067830287163 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56139604 chr20:56139608 synonymous SNV . 0 25 hm5C_associated_SNPs_101098 0 0 1 0 2 exosome 0.500231643355219 0.500231644089405 0 1.46837164649583e-09 hm5C_site_54243 DeepMRMD:0;iRNA_m5C:1.46837164649583e-09 54244 chr10 81444067 81444067 1 + C A rs577837299 81444063 + 81444043 81444083 41 CACATGCAGGAGGAGGAGGCCTGGCGGCAAGCAGGACCTGG CACATGCAGGAGGAGGAGGCCTGGAGGCAAGCAGGACCTGG < 41bp 0.540529100671459 0.853553384157201 0.8370621 0.8166293 prediction 0.626048566971484 Functional Gain - BEND3P3 ENSG00000226381 ncRNA_intronic Human other chr10:81444063 chr10:81444067 . . 0 25 hm5C_associated_SNPs_101099 0 0 0 0 0 unknown 0.50023164577667 0.500231695117617 0 9.86818937676048e-08 hm5C_site_54244 DeepMRMD:0;iRNA_m5C:9.86818937676048e-08 54245 chr7 562225 562225 1 + T G rs9801136 562222 + 562202 562242 41 CCAGGCCCGGGAGACAGAGGCGCTGACCCCGGGACAGAGCC CCAGGCCCGGGAGACAGAGGCGCGGACCCCGGGACAGAGCC < 41bp 0.543130639710803 0.85613624704961 0.91820216 0.9311459 prediction 0.626011214677614 Functional Gain - HRAT92 ENSG00000223855 ncRNA_exonic Human lincRNA chr7:562222 chr7:562225 . . 0 24 hm5C_associated_SNPs_101100 0 0 0 0 0 unknown 0.500231643921321 0.500231525439416 0.02588748 0 hm5C_site_54245 DeepMRMD:0.02588748;iRNA_m5C:0 54246 chr8 2037957 2037957 1 + C A THCA 2037953 + 2037933 2037973 41 TTCCGAGTGCTGTCAGCAAACCGGCATGGCCTGAGCGAACC TTCCGAGTGCTGTCAGCAAACCGGAATGGCCTGAGCGAACC < 41bp 0.419378287352107 0.813003149073135 0.32080418 0.36288068 prediction 0.626006298146271 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2037953 chr8:2037957 nonsynonymous SNV 0.060 1 25 hm5C_associated_SNPs_101101 0 0 0 0 1 exosome 0.500231644072207 0.500231666888656 0 4.56328965725561e-08 hm5C_site_54246 DeepMRMD:0;iRNA_m5C:4.56328965725561e-08 54247 chr11 56143730 56143730 1 + C A UCEC 56143726 + 56143706 56143746 41 GCTGGTATCATGTTCATTTCCTCCCTTCTGATTGTCTTTGT GCTGGTATCATGTTCATTTCCTCCATTCTGATTGTCTTTGT < 41bp 0.433553068879068 0.81299843763596 0.192325 0.9521911 prediction 0.62599687527192 Functional Gain - OR8U1;OR8U8 ENSG00000172199 CDS Human protein_coding chr11:56143726 chr11:56143730 nonsynonymous SNV 0.017 0 25 hm5C_associated_SNPs_101102 0 0 0 0 0 unknown 0.500231681658655 0.500231244294593 0.9043822 0 hm5C_site_54247 DeepMRMD:0.9043822;iRNA_m5C:0 54248 chr10 129538056 129538056 1 + C A rs577883103 129538052 + 129538032 129538072 41 GCCACCCACACCCACACTCACACCCACACTCACACCCACAC GCCACCCACACCCACACTCACACCAACACTCACACCCACAC < 41bp 0.425418100918584 0.812973333604977 0.05280456 0.06685236 prediction 0.625946667209953 Functional Gain - FOXI2 ENSG00000186766 UTR3 Human protein_coding chr10:129538052 chr10:129538056 . . 0 25 hm5C_associated_SNPs_101103 0 0 0 0 0 exosome 0.499249576486611 0.500232999953626 0 0.000465999907252046 hm5C_site_54248 DeepMRMD:0;iRNA_m5C:0.000465999907252046 54249 chr5 140573632 140573632 1 + C A BLCA 140573628 + 140573608 140573648 41 GACCCGCACCTGCCCCTCGCCTCCCTGGTCTCCATCAACGC GACCCGCACCTGCCCCTCGCCTCCATGGTCTCCATCAACGC < 41bp 0.41043924564205 0.812972611433006 0.126403 0.96465665 prediction 0.625945222866013 Functional Gain - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573628 chr5:140573632 nonsynonymous SNV 0.820 3 25 hm5C_associated_SNPs_101104 0 0 0 0 0 exosome 0.500231644004349 0.500231430177775 0.9293133 0 hm5C_site_54249 DeepMRMD:0.9293133;iRNA_m5C:0 54250 chr12 82752303 82752303 1 + C A rs201085808 82752299 + 82752279 82752319 41 AATTTGGGCCGAGCTGGCGCCTCACGGCCATGTTTGCGCCA AATTTGGGCCGAGCTGGCGCCTCAAGGCCATGTTTGCGCCA < 41bp 0.464068657173616 0.812963270542879 0.17268121 0.74681795 prediction 0.625926541085757 Functional Gain - METTL25 ENSG00000127720;ENSG00000133773 UTR5 Human other chr12:82752299 chr12:82752303 . . 0 25 hm5C_associated_SNPs_101105 0 0 0 0 0 cytosol 0.500231644859303 0.500231643921105 0.4936359 0 hm5C_site_54250 DeepMRMD:0.4936359;iRNA_m5C:0 54251 chr12 113796589 113796589 1 + C A rs183718103 113796585 + 113796565 113796605 41 CAGGTCCCTCCAGCCTCCCGCAGCCGCTCGGTGCTCCTGGA CAGGTCCCTCCAGCCTCCCGCAGCAGCTCGGTGCTCCTGGA < 41bp 0.550580217902681 0.863543400524608 0.34498402 0.44188362 prediction 0.625926365243854 Functional Gain - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113796585 chr12:113796589 nonsynonymous SNV 0.222 0 25 hm5C_associated_SNPs_101106 0 0 1 0 0 Nucleus 0.500231643921092 0.500198550589214 0 0 hm5C_site_54251 DeepMRMD:0;iRNA_m5C:0 54252 chr15 63579688 63579688 1 + T A LAML 63579684 + 63579664 63579704 41 TTTGTGAATACCCTATCTGACTCCTTGGGGCCAGGCACAGT TTTGTGAATACCCTATCTGACTCCATGGGGCCAGGCACAGT < 41bp 0.483716599227805 0.812962044213644 0.20748156 0.9612688 prediction 0.625924088427289 Functional Gain - APH1B ENSG00000138613 CDS Human protein_coding chr15:63579684 chr15:63579688 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_101107 0 0 1 0 2 Endoplasmic reticulum 0.500231643885174 0.50023164389925 0.9225376 2.81510370570004e-11 hm5C_site_54252 DeepMRMD:0.9225376;iRNA_m5C:2.81510370570004e-11 54253 chr10 3189824 3189824 1 + C A SKCM 3189820 + 3189800 3189840 41 TGCGGGCGTGAGGGTCCGGCCTGCCCTGATGGATGCGTACA TGCGGGCGTGAGGGTCCGGCCTGCACTGATGGATGCGTACA < 41bp 0.570148090620467 0.883085441012946 0.14182028 0.3156953 prediction 0.625874700784957 Functional Gain - PITRM1 ENSG00000107959 CDS Human protein_coding chr10:3189820 chr10:3189824 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_101108 0 0 0 0 0 Endoplasmic reticulum 0.500743963126796 0.500231626743965 0 0 hm5C_site_54253 DeepMRMD:0;iRNA_m5C:0 54254 chr6 132892143 132892143 1 + C A rs17061409 132892139 + 132892119 132892159 41 TATTTCTTGTGGCTAGACGACAGGCGAAAAAGATAGAAAAT TATTTCTTGTGGCTAGACGACAGGAGAAAAAGATAGAAAAT < 41bp 0.547595499566381 0.860523485611006 0.6123245 0.74910915 prediction 0.625855972089249 Functional Gain - TAAR6 ENSG00000146383 CDS Human protein_coding chr6:132892139 chr6:132892143 nonsynonymous SNV 0.021 3 25 hm5C_associated_SNPs_101109 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.2735693 0 hm5C_site_54254 DeepMRMD:0.2735693;iRNA_m5C:0 54255 chr5 23527661 23527661 1 + C A LUAD 23527657 + 23527637 23527677 41 AGCAATAAGTCACACCTCCTCAGACACCAGAGGACACACAC AGCAATAAGTCACACCTCCTCAGAAACCAGAGGACACACAC < 41bp 0.428857553092116 0.812922603059748 0.30825153 0.18863758 prediction 0.625845206119497 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23527657 chr5:23527661 nonsynonymous SNV 0.202 4 25 hm5C_associated_SNPs_101110 0 0 0 0 0 unknown 0.500232867078317 0.50023350328164 0 1.27240664449246e-06 hm5C_site_54255 DeepMRMD:0;iRNA_m5C:1.27240664449246e-06 54256 chr10 102566326 102566326 1 + C A LUSC 102566322 + 102566302 102566342 41 CTTTGAGCGTCCTTCCTACCCTGACGTCTTCCAGGCATCAG CTTTGAGCGTCCTTCCTACCCTGAAGTCTTCCAGGCATCAG < 41bp 0.415457167133338 0.812919015517627 0.042304575 0.06861696 prediction 0.625838031035254 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102566322 chr10:102566326 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_101111 0 0 0 0 1 Cytosol 0.500231643921027 0.500231643914747 0 0 hm5C_site_54256 DeepMRMD:0;iRNA_m5C:0 54257 chr19 30935795 30935795 1 + C A CESC 30935791 + 30935771 30935811 41 GCAGAGTGGCTTCATGACCCCGGACAAAGCCGGCCTGAGCG GCAGAGTGGCTTCATGACCCCGGAAAAAGCCGGCCTGAGCG < 41bp 0.423656853993187 0.812885620626907 0.26375696 0.46913046 prediction 0.625771241253814 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935791 chr19:30935795 nonsynonymous SNV 0.840 3 25 hm5C_associated_SNPs_101112 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54257 DeepMRMD:0;iRNA_m5C:0 54258 chr1 248366543 248366543 1 + C A LUAD 248366539 + 248366519 248366559 41 CCTGGACACCCAGCTCCACACCCCCATGTACCTCCTCCTCA CCTGGACACCCAGCTCCACACCCCAATGTACCTCCTCCTCA < 41bp 0.43551048294532 0.812866770506527 0.0022998154 0.010532767 prediction 0.625733541013054 Functional Gain - OR2M3 ENSG00000228198 CDS Human protein_coding chr1:248366539 chr1:248366543 synonymous SNV . 0 25 hm5C_associated_SNPs_101113 0 0 0 0 0 exosome 0.500231674253892 0.500231643921126 0 0 hm5C_site_54258 DeepMRMD:0;iRNA_m5C:0 54259 chr12 108618551 108618551 1 + C A LUAD 108618547 + 108618527 108618567 41 GTGTTCCGGGGCTGCTTCCGCAGGCCCGACAACCTTTCCCT GTGTTCCGGGGCTGCTTCCGCAGGACCGACAACCTTTCCCT < 41bp 0.572988416015173 0.885851458780215 0.9131174 0.92214376 prediction 0.625726085530084 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108618547 chr12:108618551 nonsynonymous SNV 0.193 3 25 hm5C_associated_SNPs_101114 0 0 0 0 1 Endoplasmic reticulum 0.500231644008313 0.50023164392134 0.01805272 0 hm5C_site_54259 DeepMRMD:0.01805272;iRNA_m5C:0 54260 chr5 15928534 15928534 1 + C A UCEC 15928530 + 15928510 15928550 41 ACTGAGGCGACTGGAAGTCTCAGGCTGTTACAATATCTCCA ACTGAGGCGACTGGAAGTCTCAGGATGTTACAATATCTCCA < 41bp 0.554313558536646 0.867161760144402 0.9335631 0.9439151 prediction 0.625696403215511 Functional Gain - FBXL7 ENSG00000183580 CDS Human protein_coding chr5:15928530 chr5:15928534 synonymous SNV . 0 25 hm5C_associated_SNPs_101115 0 0 0 0 1 exosome 0.500231640340637 0.500231562449844 0.0207040000000001 0 hm5C_site_54260 DeepMRMD:0.0207040000000001;iRNA_m5C:0 54261 chr3 44945414 44945414 1 + C A LUSC 44945410 + 44945390 44945430 41 GGACGGATGCCTGGATGAAGCGACCGGATCTGCCCAAGGGC GGACGGATGCCTGGATGAAGCGACAGGATCTGCCCAAGGGC < 41bp 0.564432369254742 0.877279927175178 0.34931016 0.36329144 prediction 0.625695115840873 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44945410 chr3:44945414 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_101116 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54261 DeepMRMD:0;iRNA_m5C:0 54262 chr1 214171246 214171246 1 + C A HNSC 214171242 + 214171222 214171262 41 TGACCAGTCTGCCTCCGGCCCTGCCGCTGGCGGCCACCACC TGACCAGTCTGCCTCCGGCCCTGCAGCTGGCGGCCACCACC < 41bp 0.426283588836736 0.812818550063064 0.17156437 0.25049782 prediction 0.625637100126128 Functional Gain - PROX1 ENSG00000117707 CDS Human protein_coding chr1:214171242 chr1:214171246 synonymous SNV . 0 25 hm5C_associated_SNPs_101117 0 0 1 0 0 cytosol 0.500231643921092 0.500231643921093 0 4.44089209850063e-16 hm5C_site_54262 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 54263 chr19 33696442 33696442 1 + C A LAML 33696438 + 33696418 33696458 41 GGCTGCCCCGACCTGGCGTGCGGCCGGCGGCTGGGCAGCTT GGCTGCCCCGACCTGGCGTGCGGCAGGCGGCTGGGCAGCTT < 41bp 0.566429947155779 0.879247242122977 0.9151062 0.9192369 prediction 0.625634589934395 Functional Gain - LRP3 ENSG00000130881 CDS Human protein_coding chr19:33696438 chr19:33696442 synonymous SNV . 0 25 hm5C_associated_SNPs_101118 0 0 1 0 0 Ribosome 0.500231643926943 0.500231642744033 0.00826140000000009 0 hm5C_site_54263 DeepMRMD:0.00826140000000009;iRNA_m5C:0 54264 chr12 56113380 56113380 1 + C A PAAD 56113376 + 56113356 56113396 41 ATGTCTACAAAGGGCAGCTGCAGTCTGCCCCTTCCTAGCCC ATGTCTACAAAGGGCAGCTGCAGTATGCCCCTTCCTAGCCC < 41bp 0.431260897553887 0.812779432904297 0.03358239 0.057264566 prediction 0.625558865808593 Functional Gain - BLOC1S1 ENSG00000135441 CDS Human protein_coding chr12:56113376 chr12:56113380 nonsynonymous SNV 0.845 3 25 hm5C_associated_SNPs_101119 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54264 DeepMRMD:0;iRNA_m5C:0 54265 chr1 207317924 207317924 1 + C A LUAD 207317920 + 207317900 207317940 41 AGGCTGTGAACAAGTGCTCACAGGCAAAAGACTCATGCAGT AGGCTGTGAACAAGTGCTCACAGGAAAAAGACTCATGCAGT < 41bp 0.550979084132666 0.863750002859639 0.8058754 0.898805 prediction 0.625541837453945 Functional Gain - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207317920 chr1:207317924 synonymous SNV . 0 25 hm5C_associated_SNPs_101120 0 0 0 0 1 Endoplasmic reticulum 0.500458800145229 0.500273331397555 0.1858592 0 hm5C_site_54265 DeepMRMD:0.1858592;iRNA_m5C:0 54266 chr18 63477076 63477076 1 + C A UCEC 63477072 + 63477052 63477092 41 AGAGACTGGATCGTGAGGAGCAGGCCTACTACACGCTCCGA AGAGACTGGATCGTGAGGAGCAGGACTACTACACGCTCCGA < 41bp 0.572988334544734 0.885758374608893 0.7198441 0.87071973 prediction 0.625540080128318 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63477072 chr18:63477076 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101121 0 0 1 0 0 exosome 0.500231643931083 0.500231830585518 0.30175126 3.73308870038613e-07 hm5C_site_54266 DeepMRMD:0.30175126;iRNA_m5C:3.73308870038613e-07 54267 chr7 63726294 63726294 1 + C A LUSC 63726290 + 63726270 63726310 41 TCAGTTATGTGTTCTCATTTCACCCAAGACCTTCCGCCAGA TCAGTTATGTGTTCTCATTTCACCAAAGACCTTCCGCCAGA < 41bp 0.436651433730218 0.812747996105962 0.04497671 0.28515673 prediction 0.625495992211924 Functional Gain - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63726290 chr7:63726294 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_101122 0 0 0 0 1 unknown 0.500231643912703 0.500231643920788 0 1.61692881306408e-11 hm5C_site_54267 DeepMRMD:0;iRNA_m5C:1.61692881306408e-11 54268 chr1 150478148 150478148 1 + C A UCS 150478144 + 150478124 150478164 41 CTGACCCTCAGCCGGAGAATCCGCCGGGCCCAGCTTGCCCA CTGACCCTCAGCCGGAGAATCCGCAGGGCCCAGCTTGCCCA < 41bp 0.411930991397579 0.812742976649498 0.19083261 0.29661462 prediction 0.625485953298997 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150478144 chr1:150478148 synonymous SNV . 0 25 hm5C_associated_SNPs_101123 0 0 0 0 2 Ribosome 0.500231643941472 0.500231643921141 0 0 hm5C_site_54268 DeepMRMD:0;iRNA_m5C:0 54269 chrX 49019193 49019193 1 + T G rs180696077 49019190 + 49019170 49019210 41 CCCCAGAGCTCAAAACTCGTCGCTGGCTGCCCTGCGTCCAC CCCCAGAGCTCAAAACTCGTCGCGGGCTGCCCTGCGTCCAC < 41bp 0.559381871737779 0.872122542995424 0.17455098 0.6016925 prediction 0.625481342515289 Functional Gain - MAGIX ENSG00000017621 UTR5 Human other chrX:49019190 chrX:49019193 . . 0 24 hm5C_associated_SNPs_101124 0 0 0 0 1 nucleus 0.500231644132494 0.50023164392151 0.203385 0 hm5C_site_54269 DeepMRMD:0.203385;iRNA_m5C:0 54270 chr3 38180165 38180165 1 + C A HNSC 38180161 + 38180141 38180181 41 CGCTGGCAGACAATGCGACCCGACCGCGCTGAGGCTCCAGG CGCTGGCAGACAATGCGACCCGACAGCGCTGAGGCTCCAGG < 41bp 0.446195884232161 0.812714315837613 0.078855366 0.11066562 prediction 0.625428631675226 Functional Gain - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38180161 chr3:38180165 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101125 0 0 1 0 0 Ribosome 0.500231644213487 0.500231640853246 0 0 hm5C_site_54270 DeepMRMD:0;iRNA_m5C:0 54271 chr14 23512119 23512119 1 + C A LUAD 23512115 + 23512095 23512135 41 GGCTCTGTAGACCTTTTCCACGTGCGGGAGAGTGGATGGGA GGCTCTGTAGACCTTTTCCACGTGAGGGAGAGTGGATGGGA < 41bp 0.455971274743459 0.812674702544048 0.31662497 0.39966115 prediction 0.625349405088097 Functional Gain - PSMB11 ENSG00000222028 CDS Human protein_coding chr14:23512115 chr14:23512119 synonymous SNV . 0 25 hm5C_associated_SNPs_101126 0 0 0 0 0 exosome 0.500231649862127 0.500231644231243 0 0 hm5C_site_54271 DeepMRMD:0;iRNA_m5C:0 54272 chr22 23438123 23438123 1 + C A UCEC 23438119 + 23438099 23438139 41 ATCATCTACAATGCCATCGACTCGCTGACCCGCATCATCCG ATCATCTACAATGCCATCGACTCGATGACCCGCATCATCCG < 41bp 0.397709840696909 0.812642211754901 0.4838653 0.8485054 prediction 0.625284423509802 Functional Gain - GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438119 chr22:23438123 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_101127 0 0 0 0 0 Ribosome 0.49338182874112 0.500239395367897 0.6970108 0.000478790735793266 hm5C_site_54272 DeepMRMD:0.6970108;iRNA_m5C:0.000478790735793266 54273 chr1 78959186 78959186 1 + C A LUSC 78959182 + 78959162 78959202 41 TGGAAATGGTAATCCAGCTCCTGGCGATAATGTGTGTCTCC TGGAAATGGTAATCCAGCTCCTGGAGATAATGTGTGTCTCC < 41bp 0.440174382966382 0.812626169360193 0.121326834 0.16013506 prediction 0.625252338720385 Functional Gain - PTGFR ENSG00000122420 CDS Human protein_coding chr1:78959182 chr1:78959186 nonsynonymous SNV 0.833 4 25 hm5C_associated_SNPs_101128 0 0 0 0 1 exosome 0.500231642704759 0.500231643917357 0 2.42519604398694e-09 hm5C_site_54273 DeepMRMD:0;iRNA_m5C:2.42519604398694e-09 54274 chr4 59362 59362 1 + C A UCEC 59358 + 59338 59378 41 AGGGATGTGGCCATAGAATTCTCCCCTGAAGAGTGGAAATG AGGGATGTGGCCATAGAATTCTCCACTGAAGAGTGGAAATG < 41bp 0.412273038807661 0.812583640898823 0.10662413 0.9365641 prediction 0.625167281797645 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:59358 chr4:59362 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_101129 0 0 1 0 2 unknown 0.500231643914973 0.500231643920995 0.8731282 1.20432552819238e-11 hm5C_site_54274 DeepMRMD:0.8731282;iRNA_m5C:1.20432552819238e-11 54275 chr6 32613052 32613052 1 + C A rs9273157 32613048 + 32613028 32613068 41 GTGTATCTGGCAGCAGTCCCCAGCCTTTTTGGCAGCAGGGA GTGTATCTGGCAGCAGTCCCCAGCATTTTTGGCAGCAGGGA < 41bp 0.486214812077073 0.812571914982993 0.19804877 0.3486211 prediction 0.625143829965985 Functional Gain - HLA-DQA1;HLA-DQB1 ENSG00000196735;ENSG00000179344 intergenic Human other chr6:32613048 chr6:32613052 . . 0 25 hm5C_associated_SNPs_101130 0 0 0 0 0 unknown 0.500231643921093 0.500231644174574 0 5.06962916091425e-10 hm5C_site_54275 DeepMRMD:0;iRNA_m5C:5.06962916091425e-10 54276 chr14 20404665 20404665 1 + C A HNSC 20404661 + 20404641 20404681 41 TGTGTTCTACACTGTTTGTACTCCCTTGTTGAACCCCATCA TGTGTTCTACACTGTTTGTACTCCATTGTTGAACCCCATCA < 41bp 0.432066252298999 0.812563036293882 0.03641209 0.9371892 prediction 0.625126072587763 Functional Gain - OR4K1 ENSG00000155249 CDS Human protein_coding chr14:20404661 chr14:20404665 synonymous SNV . 0 25 hm5C_associated_SNPs_101131 0 0 0 0 0 unknown 0.500231643921091 0.500237749664077 0.8743784 1.22114859713029e-05 hm5C_site_54276 DeepMRMD:0.8743784;iRNA_m5C:1.22114859713029e-05 54277 chr3 111432892 111432892 1 + T G LUAD 111432890 + 111432870 111432910 41 GGGCCTCACGGGGCTCCTTCCATGTCTCCCAAGCGATCCTC GGGCCTCACGGGGCTCCTTCCAGGTCTCCCAAGCGATCCTC < 41bp 0.529805184973106 0.842347130818035 0.21270505 0.77107155 prediction 0.625083891689857 Functional Gain - PLCXD2 ENSG00000240891 CDS Human protein_coding chr3:111432890 chr3:111432892 nonsynonymous SNV 0.973 2 23 hm5C_associated_SNPs_101132 0 0 0 0 1 membrane 0.500229258446206 0.500231643916148 0.5421431 4.77093988404675e-06 hm5C_site_54277 DeepMRMD:0.5421431;iRNA_m5C:4.77093988404675e-06 54278 chr19 6924767 6924767 1 + T A LAML 6924763 + 6924743 6924783 41 TGCCTCGTCTTGGCCATCGCCACCTTTCTGCTGTGTCGCTC TGCCTCGTCTTGGCCATCGCCACCATTCTGCTGTGTCGCTC < 41bp 0.491535145056764 0.812538210918714 0.13464853 0.09908667 prediction 0.625076421837428 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6924763 chr19:6924767 nonsynonymous SNV 0.913 3 25 hm5C_associated_SNPs_101133 0 0 0 0 1 exosome 0.50023163807202 0.50023161870313 0 0 hm5C_site_54278 DeepMRMD:0;iRNA_m5C:0 54279 chr5 140712169 140712169 1 + C A LUAD 140712165 + 140712145 140712185 41 CTGCTGGACAGAGACGCGCTCAAGCAGAGTCTCGTGGTGGC CTGCTGGACAGAGACGCGCTCAAGAAGAGTCTCGTGGTGGC < 41bp 0.443231104726565 0.81250608933229 0.66541415 0.88844323 prediction 0.625012178664581 Functional Gain - PCDHGA1 ENSG00000204956 CDS Human protein_coding chr5:140712165 chr5:140712169 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101134 0 0 0 0 0 exosome 0.500231643921762 0.500231643922388 0.44605816 1.25144339335748e-12 hm5C_site_54279 DeepMRMD:0.44605816;iRNA_m5C:1.25144339335748e-12 54280 chr2 45169743 45169743 1 + C A UCEC 45169739 + 45169719 45169759 41 AGGAGTCTCACGGCAAGCTGCAGGCCATGTGGCTCGAGGCG AGGAGTCTCACGGCAAGCTGCAGGACATGTGGCTCGAGGCG < 41bp 0.565000086744105 0.877505746178813 0.34945768 0.486353 prediction 0.625011318869416 Functional Gain - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45169739 chr2:45169743 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101135 0 0 0 0 0 exosome 0.500231641623557 0.500239245735551 0 1.5208223987706e-05 hm5C_site_54280 DeepMRMD:0;iRNA_m5C:1.5208223987706e-05 54281 chr17 22022759 22022759 1 + C A rs56270535 22022755 + 22022735 22022775 41 GGTAGAGGTGACAAGCCTACCGAGCCTGGTGATAGCTGGTT GGTAGAGGTGACAAGCCTACCGAGACTGGTGATAGCTGGTT < 41bp 0.532085880689405 0.844572517538162 0.08702648 0.29845834 prediction 0.624973273697513 Functional Gain - MTRNR2L1 ENSG00000256618 UTR5 Human protein_coding chr17:22022755 chr17:22022759 . . 0 25 hm5C_associated_SNPs_101136 0 0 1 0 0 Cytosol 0.500231643921063 0.500231643921093 0 5.97299987248334e-14 hm5C_site_54281 DeepMRMD:0;iRNA_m5C:5.97299987248334e-14 54282 chr11 8009124 8009124 1 + C A rs375415343 8009120 + 8009100 8009140 41 AGCTCCAGCGCAGACCCCAGCGCCCGCTCTGCCTGGTCCTG AGCTCCAGCGCAGACCCCAGCGCCAGCTCTGCCTGGTCCTG < 41bp 0.576022792176456 0.888507118442797 0.29720682 0.39413777 prediction 0.624968652532681 Functional Gain - EIF3F ENSG00000175390 CDS Human protein_coding chr11:8009120 chr11:8009124 synonymous SNV . 0 25 hm5C_associated_SNPs_101137 0 0 0 0 0 Nucleus 0.500231643920453 0.500231646956163 0 6.07142069952715e-09 hm5C_site_54282 DeepMRMD:0;iRNA_m5C:6.07142069952715e-09 54283 chr11 56043564 56043564 1 + C A LUAD 56043560 + 56043540 56043580 41 CCTGTATTCAGTGAGCATGTCACCCAGAGTCTATGTGCCAC CCTGTATTCAGTGAGCATGTCACCAAGAGTCTATGTGCCAC < 41bp 0.565826470415562 0.878299078625679 0.024611443 0.07700521 prediction 0.624945216420234 Functional Gain - OR5T1 ENSG00000181698 CDS Human protein_coding chr11:56043560 chr11:56043564 synonymous SNV . 0 25 hm5C_associated_SNPs_101138 0 0 0 0 0 unknown 0.500231669174413 0.500231644535078 0 0 hm5C_site_54283 DeepMRMD:0;iRNA_m5C:0 54284 chr21 46058252 46058252 1 + C A rs142579519 46058248 + 46058228 46058268 41 CAGTCCTTCCCAGATGATGGCTGCCTGTGGGACCCCAGCTA CAGTCCTTCCCAGATGATGGCTGCATGTGGGACCCCAGCTA < 41bp 0.496256627074449 0.812420751103486 0.029472053 0.281013 prediction 0.624841502206972 Functional Gain - KRTAP10-10 ENSG00000221859 UTR3 Human protein_coding chr21:46058248 chr21:46058252 . . 0 25 hm5C_associated_SNPs_101139 0 0 0 0 0 unknown 0.500231673795479 0.500231643921092 0 0 hm5C_site_54284 DeepMRMD:0;iRNA_m5C:0 54285 chr21 31768821 31768821 1 + C A LUAD 31768817 + 31768797 31768837 41 TTATGGAGGCTGTGGCTTCCCTTCCCTGGGCTATGGCGTTG TTATGGAGGCTGTGGCTTCCCTTCACTGGGCTATGGCGTTG < 41bp 0.561840745009605 0.874246432114311 0.17707703 0.24780807 prediction 0.624811374209411 Functional Gain - KRTAP13-1 ENSG00000198390 CDS Human protein_coding chr21:31768817 chr21:31768821 synonymous SNV . 0 25 hm5C_associated_SNPs_101140 0 0 0 0 0 unknown 0.500231643921092 0.500231643919864 0 0 hm5C_site_54285 DeepMRMD:0;iRNA_m5C:0 54286 chr17 8216853 8216853 1 + T A LUSC 8216849 + 8216829 8216869 41 TGATGAAGCTCCTCAGAATACTCCTCCAGCAACTGTGGAGG TGATGAAGCTCCTCAGAATACTCCACCAGCAACTGTGGAGG < 41bp 0.479971530818526 0.812404596456429 0.06344277 0.8281509 prediction 0.624809192912858 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8216849 chr17:8216853 synonymous SNV . 0 25 hm5C_associated_SNPs_101141 0 0 0 0 2 exosome 0.50023164390839 0.500231643915697 0.6563018 1.46131995393262e-11 hm5C_site_54286 DeepMRMD:0.6563018;iRNA_m5C:1.46131995393262e-11 54287 chr9 136501550 136501550 1 + C A STAD 136501546 + 136501526 136501566 41 CGGCCCCAGCATGCGGGAGGCAGCCTTCATGTACAGCACAG CGGCCCCAGCATGCGGGAGGCAGCATTCATGTACAGCACAG < 41bp 0.551861233072074 0.864229787682638 0.3212332 0.6539845 prediction 0.624737109221129 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136501546 chr9:136501550 synonymous SNV . 0 25 hm5C_associated_SNPs_101142 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921098 0.307969 1.08801856413265e-14 hm5C_site_54287 DeepMRMD:0.307969;iRNA_m5C:1.08801856413265e-14 54288 chr4 94750618 94750618 1 + C A LUAD 94750614 + 94750594 94750634 41 CATGGGCTGAACCACGCCTTCGACCAGCTGCGCAATGTTAT CATGGGCTGAACCACGCCTTCGACAAGCTGCGCAATGTTAT < 41bp 0.435780465315694 0.812356800896611 0.17186773 0.11777145 prediction 0.624713601793221 Functional Gain - ATOH1 ENSG00000172238 CDS Human protein_coding chr4:94750614 chr4:94750618 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_101143 0 0 0 0 0 unknown 0.500231643907302 0.500231643701367 0 0 hm5C_site_54288 DeepMRMD:0;iRNA_m5C:0 54289 chr15 25488635 25488635 1 + C A COAD 25488631 + 25488611 25488651 41 GTTCCTGGGCCAGTGGCCATCAGCCTGTTGCCCAGCCCCTG GTTCCTGGGCCAGTGGCCATCAGCATGTTGCCCAGCCCCTG < 41bp 0.507726567246788 0.820067375527814 0.75759625 0.81914496 prediction 0.624681616562051 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25488631 chr15:25488635 . . 0 25 hm5C_associated_SNPs_101144 0 0 0 0 2 unknown 0.500231643921092 0.5002316439261 0.12309742 1.00155439497485e-11 hm5C_site_54289 DeepMRMD:0.12309742;iRNA_m5C:1.00155439497485e-11 54290 chr7 135282874 135282874 1 + C A LUSC 135282870 + 135282850 135282890 41 GGGTGCTGGACTGCGGCCCCCTGGCTTTGACCCTTATTTGC GGGTGCTGGACTGCGGCCCCCTGGATTTGACCCTTATTTGC < 41bp 0.419973574545393 0.812339372501362 0.039848685 0.23076963 prediction 0.624678745002725 Functional Gain - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135282870 chr7:135282874 synonymous SNV . 0 25 hm5C_associated_SNPs_101145 0 0 1 0 1 Cytosol 0.500231643904529 0.500231643921096 0 3.31350502591476e-11 hm5C_site_54290 DeepMRMD:0;iRNA_m5C:3.31350502591476e-11 54291 chr19 36279068 36279068 1 + C A BLCA 36279064 + 36279044 36279084 41 CCCCGAAGCCGTTCAGATCCCGGTCCCCCAGTCCCCCGCCT CCCCGAAGCCGTTCAGATCCCGGTACCCCAGTCCCCCGCCT < 41bp 0.439639469826151 0.812335365785314 0.47343388 0.6390837 prediction 0.624670731570627 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36279064 chr19:36279068 nonsynonymous SNV 0.101 2 25 hm5C_associated_SNPs_101146 0 0 1 0 0 chromatin 0.500231643921093 0.500231643921092 0.2781674 0 hm5C_site_54291 DeepMRMD:0.2781674;iRNA_m5C:0 54292 chr19 55889176 55889176 1 + T G UCEC 55889174 + 55889154 55889194 41 TGCCTCCCTTGTCCAGAAAACGTGCGGAGGAAGCACATGTG TGCCTCCCTTGTCCAGAAAACGGGCGGAGGAAGCACATGTG < 41bp 0.51527940687241 0.827587063121582 0.30122632 0.8885894 prediction 0.624615312498342 Functional Gain - TMEM190 ENSG00000160472 CDS Human protein_coding chr19:55889174 chr19:55889176 nonsynonymous SNV 0.945 1 23 hm5C_associated_SNPs_101147 0 0 0 0 1 exosome 0.500231643858204 0.500231643921092 0.7771788 1.25776500325969e-10 hm5C_site_54292 DeepMRMD:0.7771788;iRNA_m5C:1.25776500325969e-10 54293 chr12 7045939 7045939 1 + T G THCA 7045937 + 7045917 7045957 41 AGCAGCAGCAGCAGCAGCAGCATCACGGAAACTCTGGGCCC AGCAGCAGCAGCAGCAGCAGCAGCACGGAAACTCTGGGCCC < 41bp 0.511406125691531 0.823710900807226 0.2997219 0.6230662 prediction 0.62460955023139 Functional Gain - ATN1 ENSG00000111676 CDS Human protein_coding chr12:7045937 chr12:7045939 nonsynonymous SNV 0.068 0 23 hm5C_associated_SNPs_101148 0 0 1 0 0 Endoplasmic reticulum 0.500231642879543 0.50023145621039 0.2461324 0 hm5C_site_54293 DeepMRMD:0.2461324;iRNA_m5C:0 54294 chrX 48650384 48650384 1 + C A UCEC 48650380 + 48650360 48650400 41 TCCCACCCGCGAGGACTCTCCTCCCCAGGCCGTGGAAGATC TCCCACCCGCGAGGACTCTCCTCCACAGGCCGTGGAAGATC < 41bp 0.384325960903747 0.812299133203434 0.73709655 0.96766883 prediction 0.624598266406867 Functional Gain - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48650380 chrX:48650384 synonymous SNV . 0 25 hm5C_associated_SNPs_101149 0 0 1 0 0 Cytosol 0.500231643921391 0.500232651591055 0.46114456 2.01533932697728e-06 hm5C_site_54294 DeepMRMD:0.46114456;iRNA_m5C:2.01533932697728e-06 54295 chr19 17615394 17615394 1 + C A LUAD 17615390 + 17615370 17615410 41 CTTAAATGAGGCAGTCTACACTCGCATCTGCTCGGGCGCCT CTTAAATGAGGCAGTCTACACTCGAATCTGCTCGGGCGCCT < 41bp 0.57404703774812 0.886342249231201 0.40734762 0.87176746 prediction 0.624590422966162 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17615390 chr19:17615394 synonymous SNV . 0 25 hm5C_associated_SNPs_101150 0 0 1 0 0 Endoplasmic reticulum 0.500231720117577 0.500231643919976 0.74353492 0 hm5C_site_54295 DeepMRMD:0.74353492;iRNA_m5C:0 54296 chr14 52734894 52734894 1 + T G KIRP 52734891 + 52734871 52734911 41 CTTCTTTGGGCTCTCCTCGACACTGCAACTCCTGGCCATGG CTTCTTTGGGCTCTCCTCGACACGGCAACTCCTGGCCATGG < 41bp 0.436335874714994 0.812294286233295 0.06945738 0.061357677 prediction 0.624588572466591 Functional Gain - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52734891 chr14:52734894 nonsynonymous SNV 0.991 3 24 hm5C_associated_SNPs_101151 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54296 DeepMRMD:0;iRNA_m5C:0 54297 chr6 35209384 35209384 1 + C A STAD 35209380 + 35209360 35209400 41 CATGCTCAGCTGCAACCGGTCTGGCAAGAAGGACACCTGTG CATGCTCAGCTGCAACCGGTCTGGAAAGAAGGACACCTGTG < 41bp 0.418131478644117 0.812246117887222 0.8066939 0.8733607 prediction 0.624492235774444 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35209380 chr6:35209384 synonymous SNV . 0 25 hm5C_associated_SNPs_101152 0 0 0 0 2 Nucleus 0.500231594021264 0.500231639855477 0.1333336 9.16684255169997e-08 hm5C_site_54297 DeepMRMD:0.1333336;iRNA_m5C:9.16684255169997e-08 54298 chr19 8841550 8841550 1 + C A SARC 8841546 + 8841526 8841566 41 CTCTTCTTGATCCGTGTGGACTCCCGGCTCCATACACCCAT CTCTTCTTGATCCGTGTGGACTCCAGGCTCCATACACCCAT < 41bp 0.434457491120151 0.812224390629485 0.017169595 0.92384434 prediction 0.624448781258971 Functional Gain - OR2Z1 ENSG00000181733 CDS Human protein_coding chr19:8841546 chr19:8841550 synonymous SNV . 0 25 hm5C_associated_SNPs_101153 0 0 0 0 0 unknown 0.500231772668932 0.500231643843988 0.84768868 0 hm5C_site_54298 DeepMRMD:0.84768868;iRNA_m5C:0 54299 chr1 89848293 89848293 1 + C A rs78680245 89848289 + 89848269 89848309 41 AGTCATCTGTTCAATACTGCCAGGCTAAACTCAATGAGCTC AGTCATCTGTTCAATACTGCCAGGATAAACTCAATGAGCTC < 41bp 0.432119648627535 0.81220800977572 0.8501564 0.79335165 prediction 0.62441601955144 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89848289 chr1:89848293 nonsynonymous SNV 0.025 0 25 hm5C_associated_SNPs_101154 0 0 0 0 1 exosome 0.500231644024944 0.500231963317598 0 6.38585307299877e-07 hm5C_site_54299 DeepMRMD:0;iRNA_m5C:6.38585307299877e-07 54300 chr17 74141570 74141570 1 + C A rs541308339 74141566 + 74141546 74141586 41 CTGAGACTCCGATGACGGTGCGAGCCACAGCACTCGTGTGT CTGAGACTCCGATGACGGTGCGAGACACAGCACTCGTGTGT < 41bp 0.461635127487984 0.812192126095328 0.32978493 0.80749017 prediction 0.624384252190656 Functional Gain - RNF157-AS1 ENSG00000267128 ncRNA_exonic Human antisense chr17:74141566 chr17:74141570 . . 0 25 hm5C_associated_SNPs_101155 0 0 0 0 2 unknown 0.500216953989505 0.500231158465871 0.61498034 2.84089527300413e-05 hm5C_site_54300 DeepMRMD:0.61498034;iRNA_m5C:2.84089527300413e-05 54301 chr12 130648561 130648561 1 + C A STAD 130648557 + 130648537 130648577 41 CAGCAGCTACTTCCACCTGGCAGCCTGGGCCATCCCGGCGG CAGCAGCTACTTCCACCTGGCAGCATGGGCCATCCCGGCGG < 41bp 0.565858866191423 0.878044938733486 0.28567225 0.48792988 prediction 0.624372145084125 Functional Gain - FZD10 ENSG00000111432 CDS Human protein_coding chr12:130648557 chr12:130648561 nonsynonymous SNV 0.985 0 25 hm5C_associated_SNPs_101156 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54301 DeepMRMD:0;iRNA_m5C:0 54302 chr14 70346406 70346406 1 + C A UCS 70346402 + 70346382 70346422 41 GCCTGGCTGGCACCATGCTGCCCGCGCGCTGCGCCCGCCTG GCCTGGCTGGCACCATGCTGCCCGAGCGCTGCGCCCGCCTG < 41bp 0.554021928443804 0.866187457386756 0.31911606 0.4697821 prediction 0.624331057885905 Functional Gain - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70346402 chr14:70346406 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101157 0 0 1 0 0 cytosol 0.500231643923704 0.500231643801399 0 0 hm5C_site_54302 DeepMRMD:0;iRNA_m5C:0 54303 chr22 31591512 31591512 1 + C A rs61736799 31591508 + 31591488 31591528 41 CCTGTTTGCAAAGCTGGCATCAGCCGAGACAAGGTCATCCC CCTGTTTGCAAAGCTGGCATCAGCAGAGACAAGGTCATCCC < 41bp 0.57788724289272 0.890036901710336 0.36213493 0.54803973 prediction 0.624299317635232 Functional Gain - RNF185 ENSG00000138942 CDS Human protein_coding chr22:31591508 chr22:31591512 synonymous SNV . 0 25 hm5C_associated_SNPs_101158 0 0 0 0 2 Ribosome 0.500232003393706 0.500232046972008 0.0960794599999999 8.71566046001249e-08 hm5C_site_54303 DeepMRMD:0.0960794599999999;iRNA_m5C:8.71566046001249e-08 54304 chr3 3886635 3886635 1 + C A LUAD 3886631 + 3886611 3886651 41 AACTTGACTGAACTAGATTTCTCCCAAAACAACTTTACTAA AACTTGACTGAACTAGATTTCTCCAAAAACAACTTTACTAA < 41bp 0.42702495344694 0.812118987626831 0.22211134 0.9561902 prediction 0.624237975253662 Functional Gain - LRRN1 ENSG00000175928 CDS Human protein_coding chr3:3886631 chr3:3886635 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101159 0 0 0 0 0 Cytosol 0.500231681031349 0.500233055678539 0.9123804 2.74929438037752e-06 hm5C_site_54304 DeepMRMD:0.9123804;iRNA_m5C:2.74929438037752e-06 54305 chr3 33418790 33418790 1 + C A THCA 33418786 + 33418766 33418806 41 ATTTTGGAGGCTGCCCGATGCTCCCATTTGACTGACGCAGG ATTTTGGAGGCTGCCCGATGCTCCAATTTGACTGACGCAGG < 41bp 0.39846340663656 0.812101833699771 0.046100974 0.6849761 prediction 0.624203667399542 Functional Gain - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33418786 chr3:33418790 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_101160 0 0 0 0 2 chromatin 0.50023164389589 0.500231537025777 0.3699522 0 hm5C_site_54305 DeepMRMD:0.3699522;iRNA_m5C:0 54306 chr15 29398883 29398883 1 + C A COAD 29398879 + 29398859 29398899 41 AGTCGGGCTGGGGCTCCATCCTGCCCACGGTGATCCTGGCC AGTCGGGCTGGGGCTCCATCCTGCACACGGTGATCCTGGCC < 41bp 0.584728519186594 0.896828076513806 0.28420073 0.32020783 prediction 0.624199114654425 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29398879 chr15:29398883 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_101161 0 0 1 0 1 Cytosol 0.500231659202921 0.500232907056563 0 2.49570728372284e-06 hm5C_site_54306 DeepMRMD:0;iRNA_m5C:2.49570728372284e-06 54307 chr16 86601394 86601394 1 + C A LUSC 86601390 + 86601370 86601410 41 CAGTTACTGGACCCTGGACCCGGACTCCTACAACATGTTCG CAGTTACTGGACCCTGGACCCGGAATCCTACAACATGTTCG < 41bp 0.462045960096671 0.812090260081388 0.24289188 0.6819721 prediction 0.624180520162776 Functional Gain - FOXC2 ENSG00000176692 CDS Human protein_coding chr16:86601390 chr16:86601394 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101162 0 0 1 0 0 exosome 0.500231643921094 0.500231643921092 0.3639442 0 hm5C_site_54307 DeepMRMD:0.3639442;iRNA_m5C:0 54308 chr20 44747004 44747004 1 + T G rs113207193 44747001 + 44746981 44747021 41 CTATGGTTCGTCTGCCTCTGCAGTGCGTCCTCTGGGGCTGC CTATGGTTCGTCTGCCTCTGCAGGGCGTCCTCTGGGGCTGC < 41bp 0.432733118801006 0.812072674160292 0.16610819 0.86494815 prediction 0.624145348320583 Functional Gain - CD40 ENSG00000101017 CDS Human protein_coding chr20:44747001 chr20:44747004 nonsynonymous SNV 0.007 3 24 hm5C_associated_SNPs_101163 0 0 1 0 1 Endoplasmic reticulum 0.500231643994057 0.500231643921092 0.7298963 0 hm5C_site_54308 DeepMRMD:0.7298963;iRNA_m5C:0 54309 chr19 41633980 41633980 1 + C A rs7246981 41633976 + 41633956 41633996 41 GGCCTTTCCAGCTGTGCCTGCGCCCGCGCTAACGCCCCGGC GGCCTTTCCAGCTGTGCCTGCGCCAGCGCTAACGCCCCGGC < 41bp 0.449591247856283 0.812064698140854 0.5949137 0.7994032 prediction 0.624129396281707 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41633976 chr19:41633980 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_101164 0 0 0 0 0 exosome 0.500231801013239 0.500231644217723 0.408979 0 hm5C_site_54309 DeepMRMD:0.408979;iRNA_m5C:0 54310 chr20 36974821 36974821 1 + C A rs41410245 36974817 + 36974797 36974837 41 CCCGCTCCCAGGAACCCATCCAGCCTCAGGAACTGCCCCCA CCCGCTCCCAGGAACCCATCCAGCATCAGGAACTGCCCCCA < 41bp 0.471623822146025 0.812030766930951 0.21312886 0.21150863 prediction 0.624061533861903 Functional Gain - LBP ENSG00000129988 UTR5 Human protein_coding chr20:36974817 chr20:36974821 . . 0 25 hm5C_associated_SNPs_101165 0 0 0 0 0 exosome 0.500231643918579 0.5002316434271 0 0 hm5C_site_54310 DeepMRMD:0;iRNA_m5C:0 54311 chr7 20867105 20867105 1 + C A SARC 20867101 + 20867081 20867121 41 AGGGACGGCTGAACAGACTTCCCGCTGCTGGTGTGGGTGAC AGGGACGGCTGAACAGACTTCCCGATGCTGGTGTGGGTGAC < 41bp 0.456882987310033 0.812018868998361 0.1680139 0.2732006 prediction 0.624037737996722 Functional Gain - RPL23P8 ENSG00000219451 ncRNA_exonic Human processed_pseudogene chr7:20867101 chr7:20867105 . . 0 25 hm5C_associated_SNPs_101166 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_54311 DeepMRMD:0;iRNA_m5C:0 54312 chr20 55206728 55206728 1 + C A GBM 55206724 + 55206704 55206744 41 CCTGGGGCTCCACGACATGCCTCACCAGATGGACGAGGTGC CCTGGGGCTCCACGACATGCCTCAACAGATGGACGAGGTGC < 41bp 0.406548068529289 0.811995011769852 0.12038997 0.1771752 prediction 0.623990023539703 Functional Gain - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55206724 chr20:55206728 nonsynonymous SNV 0.926 0 25 hm5C_associated_SNPs_101167 0 0 1 0 1 Cytosol 0.500231626550995 0.500231643900232 0 3.46984738719414e-08 hm5C_site_54312 DeepMRMD:0;iRNA_m5C:3.46984738719414e-08 54313 chr16 66423306 66423306 1 + C A UCEC 66423302 + 66423282 66423322 41 AAAGCTTGGACCGAGAGAAGCAGGCCAGGTATGAGATCGTG AAAGCTTGGACCGAGAGAAGCAGGACAGGTATGAGATCGTG < 41bp 0.424032517103092 0.811956916084825 0.86120427 0.8946458 prediction 0.62391383216965 Functional Gain - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66423302 chr16:66423306 nonsynonymous SNV 0.513 0 25 hm5C_associated_SNPs_101168 0 0 0 0 1 Cytosol 0.500231643891574 0.500231589049171 0.0668830600000001 0 hm5C_site_54313 DeepMRMD:0.0668830600000001;iRNA_m5C:0 54314 chr13 115004884 115004884 1 + T G KIRC 115004881 + 115004861 115004901 41 CTTGACATGGAAGAGCCCATCAATAAAAGATTATTTGAAAA CTTGACATGGAAGAGCCCATCAAGAAAAGATTATTTGAAAA < 41bp 0.545497042269111 0.857446472071037 0.06338233 0.25631747 prediction 0.623898859603851 Functional Gain - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115004881 chr13:115004884 nonsynonymous SNV 0.979 2 24 hm5C_associated_SNPs_101169 0 0 1 0 3 Ribosome 0.500231643921097 0.500231643921324 0 4.53859172466764e-13 hm5C_site_54314 DeepMRMD:0;iRNA_m5C:4.53859172466764e-13 54315 chr19 48248839 48248839 1 + T G COAD 48248837 + 48248817 48248857 41 ATGGCGGCAGGAGGCAGTGGCGTTGGTGGGAAGCGCAGCTC ATGGCGGCAGGAGGCAGTGGCGGTGGTGGGAAGCGCAGCTC < 41bp 0.48705023313357 0.811928953568465 0.8237397 0.8868829 prediction 0.62385790713693 Functional Gain - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48248837 chr19:48248839 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_101170 0 0 1 0 0 unknown 0.500231643869478 0.500231643574516 0.1262864 0 hm5C_site_54315 DeepMRMD:0.1262864;iRNA_m5C:0 54316 chr17 13927984 13927984 1 + C A LUAD 13927980 + 13927960 13928000 41 CGCATCCAGGTACCACAGGACAGCCTGGGGCAGGCCCTAGC CGCATCCAGGTACCACAGGACAGCATGGGGCAGGCCCTAGC < 41bp 0.480403597881618 0.811926253101611 0.25000817 0.30587155 prediction 0.623852506203222 Functional Gain - CDRT15P1 ENSG00000141028 ncRNA_exonic Human unprocessed_pseudogene chr17:13927980 chr17:13927984 . . 0 25 hm5C_associated_SNPs_101171 0 0 0 0 0 unknown 0.500231643921092 0.500231643921085 0 0 hm5C_site_54316 DeepMRMD:0;iRNA_m5C:0 54317 chr1 248344072 248344072 1 + C A LUAD 248344068 + 248344048 248344088 41 CAGCTTTGTTCATGTACATACGGCCCACATCTGATCACTCC CAGCTTTGTTCATGTACATACGGCACACATCTGATCACTCC < 41bp 0.548309701662676 0.860235087445953 0.0698649 0.06765145 prediction 0.623850771566554 Functional Gain - OR2M2 ENSG00000198601 CDS Human protein_coding chr1:248344068 chr1:248344072 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_101172 0 0 0 0 0 exosome 0.500231643921222 0.50023183341899 0 3.78995536065574e-07 hm5C_site_54317 DeepMRMD:0;iRNA_m5C:3.78995536065574e-07 54318 chr6 108444858 108444858 1 + C A rs150327912 108444854 + 108444834 108444874 41 CATGGCAAGACGGGGGCCCACCGGCCTGCTGGCTCCTCACC CATGGCAAGACGGGGGCCCACCGGACTGCTGGCTCCTCACC < 41bp 0.509083669489485 0.821006718819626 0.28130227 0.42052764 prediction 0.623846098660282 Functional Gain - OSTM1-AS1 ENSG00000225174 ncRNA_exonic Human lincRNA chr6:108444854 chr6:108444858 . . 0 25 hm5C_associated_SNPs_101173 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_54318 DeepMRMD:0;iRNA_m5C:0 54319 chr13 49762718 49762718 1 + C A UCEC 49762714 + 49762694 49762734 41 TCTTTGTGATCGACTGAATCCAGGCTGTTTCTATCGTTTAC TCTTTGTGATCGACTGAATCCAGGATGTTTCTATCGTTTAC < 41bp 0.435263017121471 0.811920862487938 0.44597858 0.46357027 prediction 0.623841724975876 Functional Gain - FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49762714 chr13:49762718 synonymous SNV . 0 25 hm5C_associated_SNPs_101174 0 0 1 0 2 Cytosol 0.500231646386856 0.500231643921355 0 0 hm5C_site_54319 DeepMRMD:0;iRNA_m5C:0 54320 chr6 17292055 17292055 1 + C A LUAD 17292051 + 17292031 17292071 41 GAGTGGTCATTCCACACGTCCAGCCGACAGCAGCTGCCGCC GAGTGGTCATTCCACACGTCCAGCAGACAGCAGCTGCCGCC < 41bp 0.570859723115666 0.882759847536896 0.24801731 0.36703247 prediction 0.62380024884246 Functional Gain - RBM24 ENSG00000112183 CDS Human protein_coding chr6:17292051 chr6:17292055 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101175 0 0 0 4 1 cytosol 0.500231643926577 0.500231737379273 0 1.86905391386105e-07 hm5C_site_54320 DeepMRMD:0;iRNA_m5C:1.86905391386105e-07 54321 chr7 53104055 53104055 1 + C A LUAD 53104051 + 53104031 53104071 41 AATGGAGCGGTTGCTTCCTTCGTGCCCAGGCCAGGGCCTCT AATGGAGCGGTTGCTTCCTTCGTGACCAGGCCAGGGCCTCT < 41bp 0.545484996560464 0.857378861888914 0.13517243 0.25533032 prediction 0.6237877306569 Functional Gain - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53104051 chr7:53104055 nonsynonymous SNV 0.006 3 25 hm5C_associated_SNPs_101176 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_54321 DeepMRMD:0;iRNA_m5C:0 54322 chr15 74335396 74335396 1 + C A ESCA 74335392 + 74335372 74335412 41 CTCCAGCTGGAAGGCCCCAGCACCCTCAGGGTCCTGGACGA CTCCAGCTGGAAGGCCCCAGCACCATCAGGGTCCTGGACGA < 41bp 0.454116683950977 0.811892796188542 0.07339218 0.06747183 prediction 0.623785592377084 Functional Gain - PML ENSG00000140464 CDS Human protein_coding chr15:74335392 chr15:74335396 nonsynonymous SNV 0.129 2 25 hm5C_associated_SNPs_101177 0 0 0 1 2 Cytosol 0.500231643921084 0.500231643920562 0 0 hm5C_site_54322 DeepMRMD:0;iRNA_m5C:0 54323 chr14 21526433 21526433 1 + C A LUSC 21526429 + 21526409 21526449 41 TACAAAGAGAAGCACCTGAACACACCTTACATAGTGGCCTG TACAAAGAGAAGCACCTGAACACAACTTACATAGTGGCCTG < 41bp 0.553857437629557 0.865744342498114 0.5075164 0.55142576 prediction 0.623773809737114 Functional Gain - RNASE8 ENSG00000173431 CDS Human protein_coding chr14:21526429 chr14:21526433 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101178 0 0 0 0 0 unknown 0.500231643921101 0.500231643920512 0.08781872 0 hm5C_site_54323 DeepMRMD:0.08781872;iRNA_m5C:0 54324 chr5 128320947 128320947 1 + T A LUAD 128320943 + 128320923 128320963 41 CAAAGAAAAACTGAGCACCTCACCTGATGAGCCCGTGCCAC CAAAGAAAAACTGAGCACCTCACCAGATGAGCCCGTGCCAC < 41bp 0.492415981368284 0.811885289831213 0.22411382 0.16890314 prediction 0.623770579662427 Functional Gain - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128320943 chr5:128320947 synonymous SNV . 0 25 hm5C_associated_SNPs_101179 0 0 0 0 1 Endoplasmic reticulum 0.500231643934285 0.500231644324999 0 7.81428033391762e-10 hm5C_site_54324 DeepMRMD:0;iRNA_m5C:7.81428033391762e-10 54325 chr14 20711700 20711700 1 + C A UCEC 20711696 + 20711676 20711716 41 TGGTCGGAGAAAAGCCTTCTCTACCTGTGGTTCTCATTTGG TGGTCGGAGAAAAGCCTTCTCTACATGTGGTTCTCATTTGG < 41bp 0.433868706283124 0.811846977308219 0.1726692 0.89821637 prediction 0.623693954616438 Functional Gain - OR11H4 ENSG00000176198 CDS Human protein_coding chr14:20711696 chr14:20711700 synonymous SNV . 0 25 hm5C_associated_SNPs_101180 0 0 0 0 0 unknown 0.500231643921093 0.500231644030638 0.79643274 2.19090301456504e-10 hm5C_site_54325 DeepMRMD:0.79643274;iRNA_m5C:2.19090301456504e-10 54326 chr10 126672147 126672147 1 + C A OV 126672143 + 126672123 126672163 41 ATGGAAAATGATGGCTATGGCAACCGAGGTGCTGGTGCTAA ATGGAAAATGATGGCTATGGCAACAGAGGTGCTGGTGCTAA < 41bp 0.425663365826126 0.811836520993935 0.22014636 0.308311 prediction 0.62367304198787 Functional Gain - ZRANB1 ENSG00000019995 CDS Human protein_coding chr10:126672143 chr10:126672147 synonymous SNV . 0 25 hm5C_associated_SNPs_101181 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54326 DeepMRMD:0;iRNA_m5C:0 54327 chr11 123989006 123989006 1 + T G rs35485142 123989004 + 123988984 123989024 41 GCAATGTGGGTAACCTCCAACCTGGGTCGAAGGCGGCAGTC GCAATGTGGGTAACCTCCAACCGGGGTCGAAGGCGGCAGTC < 41bp 0.523414980744997 0.835221156923007 0.88819325 0.9515933 prediction 0.623612352356018 Functional Gain - VWA5A ENSG00000110002 CDS Human protein_coding chr11:123989004 chr11:123989006 synonymous SNV . 0 23 hm5C_associated_SNPs_101182 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0.1268001 0 hm5C_site_54327 DeepMRMD:0.1268001;iRNA_m5C:0 54328 chr11 46727164 46727164 1 + C A STAD 46727160 + 46727140 46727180 41 GCCTGAGGCACCCTGCAGCCCACCCTCTGTGCCTTCTGCTG GCCTGAGGCACCCTGCAGCCCACCATCTGTGCCTTCTGCTG < 41bp 0.427692357007831 0.811804493574082 0.022982866 0.08479568 prediction 0.623608987148163 Functional Gain - ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46727160 chr11:46727164 synonymous SNV . 0 25 hm5C_associated_SNPs_101183 0 0 1 0 0 cytosol 0.500231643921092 0.500231643921643 0 1.10089715121831e-12 hm5C_site_54328 DeepMRMD:0;iRNA_m5C:1.10089715121831e-12 54329 chrX 135724281 135724281 1 + C A rs370941327 135724277 + 135724257 135724297 41 CCCAGGGTCCAGCTCAGCACCTGGCTCACATTAGGCACTCA CCCAGGGTCCAGCTCAGCACCTGGATCACATTAGGCACTCA < 41bp 0.574344422042994 0.886124186259711 0.048048317 0.1759525 prediction 0.623559528433435 Functional Gain - LINC00892 ENSG00000233093 ncRNA_exonic Human processed_transcript chrX:135724277 chrX:135724281 . . 0 25 hm5C_associated_SNPs_101184 0 0 0 0 0 unknown 0.500231643915799 0.50023164393816 0 4.47224479671604e-11 hm5C_site_54329 DeepMRMD:0;iRNA_m5C:4.47224479671604e-11 54330 chr9 133542151 133542151 1 + T G OV 133542149 + 133542129 133542169 41 CGCGTGATCGCCCCGGAGCACGTGGACATCTGCAAGAACAA CGCGTGATCGCCCCGGAGCACGGGGACATCTGCAAGAACAA < 41bp 0.528011067407408 0.839787191109205 0.09639129 0.5559268 prediction 0.623552247403595 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133542149 chr9:133542151 nonsynonymous SNV 0.995 4 23 hm5C_associated_SNPs_101185 0 0 0 0 1 exosome 0.500231643921037 0.500231643921092 0.1118536 1.11466391672366e-13 hm5C_site_54330 DeepMRMD:0.1118536;iRNA_m5C:1.11466391672366e-13 54331 chr11 64067024 64067024 1 + C A HNSC 64067020 + 64067000 64067040 41 GCCTTCCCCGCCCACGGCCTCGGCCCTGGATTATCCCAGCG GCCTTCCCCGCCCACGGCCTCGGCACTGGATTATCCCAGCG < 41bp 0.571028399257462 0.882797122717602 0.5517612 0.6733516 prediction 0.62353744692028 Functional Gain - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64067020 chr11:64067024 nonsynonymous SNV 0.966 0 25 hm5C_associated_SNPs_101186 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.2431808 0 hm5C_site_54331 DeepMRMD:0.2431808;iRNA_m5C:0 54332 chr2 238436130 238436130 1 + C A rs577434782 238436126 + 238436106 238436146 41 GTGATGGCCTCCCACCATTCCAAGCGGAGAGGCCGGGCGTC GTGATGGCCTCCCACCATTCCAAGAGGAGAGGCCGGGCGTC < 41bp 0.432893885269728 0.811760267381614 0.8929866 0.8994929 prediction 0.623520534763228 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238436126 chr2:238436130 synonymous SNV . 0 25 hm5C_associated_SNPs_101187 0 0 0 0 1 Nucleus 0.500231644844015 0.500231295856321 0.0130126000000002 0 hm5C_site_54332 DeepMRMD:0.0130126000000002;iRNA_m5C:0 54333 chr6 90605651 90605651 1 + C A LUAD 90605647 + 90605627 90605667 41 GGTAAGACAGGCAGCCCTACCGATCATGGAACTATCACAAG GGTAAGACAGGCAGCCCTACCGATAATGGAACTATCACAAG < 41bp 0.438443263935724 0.81175714792803 0.09185484 0.22942635 prediction 0.623514295856061 Functional Gain - GJA10 ENSG00000135355 CDS Human protein_coding chr6:90605647 chr6:90605651 synonymous SNV . 0 25 hm5C_associated_SNPs_101188 0 0 0 0 0 unknown 0.500231643922582 0.50023164392109 0 0 hm5C_site_54333 DeepMRMD:0;iRNA_m5C:0 54334 chr13 53602984 53602984 1 + C A STAD 53602980 + 53602960 53603000 41 TAAGAGGACAAGATGAGGCCCGGCCTCTCATTTCTCCTAGC TAAGAGGACAAGATGAGGCCCGGCATCTCATTTCTCCTAGC < 41bp 0.45426195935245 0.811747729591701 0.22320944 0.28344268 prediction 0.623495459183403 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53602980 chr13:53602984 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_101189 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54334 DeepMRMD:0;iRNA_m5C:0 54335 chr2 71801436 71801436 1 + C A rs141536854 71801432 + 71801412 71801452 41 GATGCCTTCCGCCGCCGCCGCTGGCGCCGTCGCATGGAGCC GATGCCTTCCGCCGCCGCCGCTGGAGCCGTCGCATGGAGCC < 41bp 0.516468335421586 0.828200799768249 0.53479296 0.44917506 prediction 0.623464928693327 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71801432 chr2:71801436 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_101190 0 0 0 0 1 Nucleus 0.500231643921093 0.500231643921092 0 0 hm5C_site_54335 DeepMRMD:0;iRNA_m5C:0 54336 chrX 22291767 22291767 1 + C A UCEC 22291763 + 22291743 22291783 41 CCCCAGAACTATCTCTAAGTCTGCCTTTTCCCATCCAGTGG CCCCAGAACTATCTCTAAGTCTGCATTTTCCCATCCAGTGG < 41bp 0.578783594380008 0.890498991530493 0.044825733 0.15195239 prediction 0.623430794300968 Functional Gain - ZNF645 ENSG00000175809 CDS Human protein_coding chrX:22291763 chrX:22291767 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_101191 0 0 0 0 0 unknown 0.500231643921093 0.500231643921095 0 4.44089209850063e-15 hm5C_site_54336 DeepMRMD:0;iRNA_m5C:4.44089209850063e-15 54337 chr19 36149504 36149504 1 + C A UCEC 36149500 + 36149480 36149520 41 CACTGTCTTTCCACAGGTCACAGACTGGGATGAGCAACGGG CACTGTCTTTCCACAGGTCACAGAATGGGATGAGCAACGGG < 41bp 0.441419541723487 0.811707273386568 0.05318767 0.16186196 prediction 0.623414546773135 Functional Gain - COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36149500 chr19:36149504 nonsynonymous SNV 0.454 1 25 hm5C_associated_SNPs_101192 0 0 1 0 1 Ribosome 0.500231643975814 0.500231643906512 0 0 hm5C_site_54337 DeepMRMD:0;iRNA_m5C:0 54338 chr4 100208053 100208053 1 + G T LUAD 100208057 - 100208037 100208077 41 TGTGATTTTAGGCCATGAGGCAGCCGGCATCGTGGAGAGTG TGTGATTTTAGGCCATGAGGCAGCAGGCATCGTGGAGAGTG < 41bp 0.575817401814346 0.887519067762575 0.26874042 0.2903013 prediction 0.623403331896458 Functional Gain - ADH1A ENSG00000187758 CDS Human protein_coding chr4:100208057 chr4:100208053 synonymous SNV . 0 25 hm5C_associated_SNPs_101193 0 0 0 0 2 exosome 0.500231643921071 0.500231643921093 0 4.2854608750531e-14 hm5C_site_54338 DeepMRMD:0;iRNA_m5C:4.2854608750531e-14 54339 chr14 52735205 52735205 1 + C A UCEC 52735201 + 52735181 52735221 41 TGCAACCTCGGCGCCATGCGCAACCTCTATGCGATGCACCG TGCAACCTCGGCGCCATGCGCAACATCTATGCGATGCACCG < 41bp 0.446197291234836 0.811627506982562 0.0865621 0.2566839 prediction 0.623255013965124 Functional Gain - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52735201 chr14:52735205 nonsynonymous SNV 0.906 3 25 hm5C_associated_SNPs_101194 0 0 0 0 0 exosome 0.500229200236002 0.500228398484482 0 0 hm5C_site_54339 DeepMRMD:0;iRNA_m5C:0 54340 chr19 7743012 7743012 1 + C A LUSC 7743008 + 7742988 7743028 41 AGTCCCAGCCCAGTGCAGGCCGCCCTCAGACTCCACCCAGG AGTCCCAGCCCAGTGCAGGCCGCCATCAGACTCCACCCAGG < 41bp 0.586604977410323 0.898207265360077 0.019378066 0.23564792 prediction 0.62320457589951 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7743008 chr19:7743012 synonymous SNV . 0 25 hm5C_associated_SNPs_101195 0 0 0 0 1 Endoplasmic reticulum 0.500231641155402 0.500231643920859 0 5.53091261679128e-09 hm5C_site_54340 DeepMRMD:0;iRNA_m5C:5.53091261679128e-09 54341 chrX 55033113 55033113 1 + C A UCEC 55033109 + 55033089 55033129 41 TGCTGGTCAGCAGTCACTGGCGCCCGCCATCTCAACTATGG TGCTGGTCAGCAGTCACTGGCGCCAGCCATCTCAACTATGG < 41bp 0.419360083651054 0.811552753388063 0.2908174 0.48601982 prediction 0.623105506776127 Functional Gain - APEX2 ENSG00000169188 CDS Human protein_coding chrX:55033109 chrX:55033113 nonsynonymous SNV 0.957 4 25 hm5C_associated_SNPs_101196 0 0 1 0 0 Ribosome 0.500231644045957 0.500231644768705 0 1.44549661129645e-09 hm5C_site_54341 DeepMRMD:0;iRNA_m5C:1.44549661129645e-09 54342 chr11 55322171 55322171 1 + T G ESCA 55322169 + 55322149 55322189 41 GATGCGTGCTTCTCATCTGTCATCACCCCAAAGATGATTGT GATGCGTGCTTCTCATCTGTCAGCACCCCAAAGATGATTGT < 41bp 0.499365913665513 0.811525424863193 0.04613927 0.17661545 prediction 0.623050849726386 Functional Gain - OR4C15 ENSG00000181939 CDS Human protein_coding chr11:55322169 chr11:55322171 nonsynonymous SNV 0.007 0 23 hm5C_associated_SNPs_101197 0 0 0 0 0 unknown 0.500231643921151 0.500231644229786 0 6.17270901059896e-10 hm5C_site_54342 DeepMRMD:0;iRNA_m5C:6.17270901059896e-10 54343 chr12 54922088 54922088 1 + C A SKCM 54922084 + 54922064 54922104 41 TGGGACCATCATCCTCTCCCCAGCCATGCAGGCCTTCGTCA TGGGACCATCATCCTCTCCCCAGCAATGCAGGCCTTCGTCA < 41bp 0.405694336427509 0.81152044707858 0.08805624 0.21304652 prediction 0.62304089415716 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54922084 chr12:54922088 synonymous SNV . 0 25 hm5C_associated_SNPs_101198 0 0 0 0 2 Cytosol 0.500231643949548 0.500231642788764 0 0 hm5C_site_54343 DeepMRMD:0;iRNA_m5C:0 54344 chr16 2035892 2035892 1 + C A SKCM 2035888 + 2035868 2035908 41 CTGTGCAGGAACCACCCAGACACCCGCACCCGGGCATGCTT CTGTGCAGGAACCACCCAGACACCAGCACCCGGGCATGCTT < 41bp 0.415589624408144 0.811513641683115 0.07866436 0.04891172 prediction 0.62302728336623 Functional Gain - GFER ENSG00000127554 CDS Human protein_coding chr16:2035888 chr16:2035892 nonsynonymous SNV 0.622 0 25 hm5C_associated_SNPs_101199 0 0 1 0 1 Cytosol 0.500231643921347 0.500231644750638 0 1.65858193845736e-09 hm5C_site_54344 DeepMRMD:0;iRNA_m5C:1.65858193845736e-09 54345 chrX 100668219 100668219 1 + C A BRCA 100668215 + 100668195 100668235 41 AGTTATGGAGGTCCTGCTAGCCAGCAGCTGAGTGGTGGTTA AGTTATGGAGGTCCTGCTAGCCAGAAGCTGAGTGGTGGTTA < 41bp 0.548424420783376 0.859885473185479 0.41684 0.78514504 prediction 0.622922104804206 Functional Gain - HNRNPH2 ENSG00000126945 CDS Human protein_coding chrX:100668215 chrX:100668219 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101200 0 0 1 0 0 Cytosol 0.50023164394331 0.500231786193339 0.57029008 2.84500056402237e-07 hm5C_site_54345 DeepMRMD:0.57029008;iRNA_m5C:2.84500056402237e-07 54346 chr19 34892372 34892372 1 + C A rs150670531 34892368 + 34892348 34892388 41 GATCTCCTGACCTCGTGATCCGCCCGCCTCAGCCTCCCAAA GATCTCCTGACCTCGTGATCCGCCAGCCTCAGCCTCCCAAA < 41bp 0.547513044203745 0.858946792974006 0.043945223 0.05434087 prediction 0.622867497540522 Functional Gain - GPI ENSG00000105220 UTR3 Human protein_coding chr19:34892368 chr19:34892372 . . 0 25 hm5C_associated_SNPs_101201 0 0 0 0 0 Ribosome 0.500231635829039 0.500234986550779 0 6.70144347969526e-06 hm5C_site_54346 DeepMRMD:0;iRNA_m5C:6.70144347969526e-06 54347 chr17 51902309 51902309 1 + G T LUAD 51902313 - 51902293 51902333 41 GCTCCAAAATGGACAAAGACCGGGCAATGCAAAAATCAATA GCTCCAAAATGGACAAAGACCGGGAAATGCAAAAATCAATA < 41bp 0.555215868914933 0.8666159401712 0.3042848 0.28859434 prediction 0.622800142512534 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51902313 chr17:51902309 nonsynonymous SNV 0.878 1 25 hm5C_associated_SNPs_101202 0 0 0 0 0 exosome 0.500231643921092 0.500231643920146 0 0 hm5C_site_54347 DeepMRMD:0;iRNA_m5C:0 54348 chr20 55842128 55842128 1 + C A ACC 55842124 + 55842104 55842144 41 GCCAGCCACGCTGACCCCTCCGCGCCTCCCTGAAGCCGTTG GCCAGCCACGCTGACCCCTCCGCGACTCCCTGAAGCCGTTG < 41bp 0.470255721386811 0.811378150289963 0.5242727 0.5132309 prediction 0.622756300579927 Functional Gain - BMP7 ENSG00000226308 ncRNA_exonic Human lincRNA chr20:55842124 chr20:55842128 . . 0 25 hm5C_associated_SNPs_101203 0 0 0 0 0 Ribosome 0.500231644011715 0.500231643920103 0 0 hm5C_site_54348 DeepMRMD:0;iRNA_m5C:0 54349 chr17 33475407 33475407 1 + T A LUAD 33475403 + 33475383 33475423 41 AGCTGACCAAGGACAAGGCCCTGCTGGCCACGCTTTATCGG AGCTGACCAAGGACAAGGCCCTGCAGGCCACGCTTTATCGG < 41bp 0.512574373151004 0.823920433678872 0.12511912 0.21618938 prediction 0.622692121055737 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33475403 chr17:33475407 nonsynonymous SNV 0.679 0 25 hm5C_associated_SNPs_101204 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_54349 DeepMRMD:0;iRNA_m5C:0 54350 chr1 11771928 11771928 1 + C A LIHC 11771924 + 11771904 11771944 41 CCAGCAGGCACAGCCCAGGTCTGACGGGGAGGTGATGCCCA CCAGCAGGCACAGCCCAGGTCTGAAGGGGAGGTGATGCCCA < 41bp 0.405609886848602 0.811337422856341 0.4241532 0.75435865 prediction 0.622674845712683 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11771924 chr1:11771928 nonsynonymous SNV 0.977 0 25 hm5C_associated_SNPs_101205 0 0 0 0 2 exosome 0.500231643817036 0.500231643921092 0.5087173 2.08112638233615e-10 hm5C_site_54350 DeepMRMD:0.5087173;iRNA_m5C:2.08112638233615e-10 54351 chr2 30863117 30863117 1 + C A UCEC 30863113 + 30863093 30863133 41 GTCCACCGGTATCCAATAGACACCCTCCCCACATCCAAGGA GTCCACCGGTATCCAATAGACACCATCCCCACATCCAAGGA < 41bp 0.416152863826833 0.811302873368486 0.0017462969 0.00266549 prediction 0.622605746736972 Functional Gain - LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30863113 chr2:30863117 nonsynonymous SNV 0.052 1 25 hm5C_associated_SNPs_101206 0 0 1 0 0 Endoplasmic reticulum 0.500231644063282 0.500230962612126 0 0 hm5C_site_54351 DeepMRMD:0;iRNA_m5C:0 54352 chr19 58564960 58564960 1 + C A LUSC 58564956 + 58564936 58564976 41 CCGAAGGAGAAACAGGAACACTGACCAGAGCGGCCGCCACC CCGAAGGAGAAACAGGAACACTGAACAGAGCGGCCGCCACC < 41bp 0.427164004193968 0.811296793814895 0.08238241 0.2975534 prediction 0.622593587629791 Functional Gain - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58564956 chr19:58564960 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101207 0 0 0 0 0 exosome 0.500231643921247 0.500231643916971 0 0 hm5C_site_54352 DeepMRMD:0;iRNA_m5C:0 54353 chrX 151806675 151806675 1 + C A UCEC 151806671 + 151806651 151806691 41 CCGGCCATGGGCATCCGAGGCATGCTGCGAGCCGCAGTGAT CCGGCCATGGGCATCCGAGGCATGATGCGAGCCGCAGTGAT < 41bp 0.456834391566316 0.811282783178635 0.30523387 0.48201695 prediction 0.62256556635727 Functional Gain - GABRQ ENSG00000147402 CDS Human other chrX:151806671 chrX:151806675 nonsynonymous SNV 0.860 3 25 hm5C_associated_SNPs_101208 0 0 0 0 0 chromatin 0.500231643921094 0.500231643921331 0 4.72510919280467e-13 hm5C_site_54353 DeepMRMD:0;iRNA_m5C:4.72510919280467e-13 54354 chr19 55220697 55220697 1 + C A LUAD 55220693 + 55220673 55220713 41 AAGAGGACACTCAGGGGTCCCAGCCCCAGGCTCTGCCTGCA AAGAGGACACTCAGGGGTCCCAGCACCAGGCTCTGCCTGCA < 41bp 0.480609273266547 0.811280446037887 0.21116018 0.3602996 prediction 0.622560892075775 Functional Gain - LILRP2 ENSG00000170858 ncRNA_intronic Human transcribed_processed_pseudogene chr19:55220693 chr19:55220697 . . 0 25 hm5C_associated_SNPs_101209 0 0 0 0 0 unknown 0.500231643921092 0.50023164392108 0 0 hm5C_site_54354 DeepMRMD:0;iRNA_m5C:0 54355 chr14 23844979 23844979 1 + C A rs1124053 23844975 + 23844955 23844995 41 TACCACAACCAGACTGTCTTCTACCGGCGGCCATGCCATGG TACCACAACCAGACTGTCTTCTACAGGCGGCCATGCCATGG < 41bp 0.586782430559439 0.898053581116786 0.091138095 0.8082417 prediction 0.622542301114694 Functional Gain - IL25 ENSG00000166090 CDS Human protein_coding chr14:23844975 chr14:23844979 synonymous SNV . 0 25 hm5C_associated_SNPs_101210 0 0 0 0 0 exosome 0.500231643921273 0.500231643921184 0.6164834 0 hm5C_site_54355 DeepMRMD:0.6164834;iRNA_m5C:0 54356 chr1 210591515 210591515 1 + T G LUAD 210591513 + 210591493 210591533 41 TTTAGATGCAGCAGCAGGAGCATGACTCCCTGAAGGCCAGC TTTAGATGCAGCAGCAGGAGCAGGACTCCCTGAAGGCCAGC < 41bp 0.507514833351834 0.818774025466447 0.20853704 0.8094368 prediction 0.622518384229225 Functional Gain - HHAT ENSG00000054392 CDS Human protein_coding chr1:210591513 chr1:210591515 nonsynonymous SNV 0.004 0 23 hm5C_associated_SNPs_101211 0 0 0 0 1 nucleolus 0.500231645879597 0.500231643918328 0.6188736 0 hm5C_site_54356 DeepMRMD:0.6188736;iRNA_m5C:0 54357 chr1 161697361 161697361 1 + C A rs35358752 161697357 + 161697337 161697377 41 TCCTGGAATTAAAGGAGCCACAGGCCCTCCGGGAGCTCAGG TCCTGGAATTAAAGGAGCCACAGGACCTCCGGGAGCTCAGG < 41bp 0.561430429138761 0.872684802236216 0.43672544 0.61252177 prediction 0.62250874619491 Functional Gain - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161697357 chr1:161697361 nonsynonymous SNV 0.506 1 25 hm5C_associated_SNPs_101212 0 0 0 2 0 Endoplasmic reticulum 0.500231643921095 0.500231644022052 0.22504354 2.01915373310158e-10 hm5C_site_54357 DeepMRMD:0.22504354;iRNA_m5C:2.01915373310158e-10 54358 chr4 38946992 38946992 1 + C A rs567051655 38946988 + 38946968 38947008 41 TGGCTGCTTCTCCTGAGCTCCACGCCTTCATTGCAGCTGCA TGGCTGCTTCTCCTGAGCTCCACGACTTCATTGCAGCTGCA < 41bp 0.496327640459183 0.811252561172005 0.10505727 0.18400171 prediction 0.622505122344009 Functional Gain - FAM114A1 ENSG00000197712 UTR3 Human protein_coding chr4:38946988 chr4:38946992 . . 0 25 hm5C_associated_SNPs_101213 0 0 0 0 0 Cytosol 0.50021181911856 0.500232434638578 0 4.12310400366156e-05 hm5C_site_54358 DeepMRMD:0;iRNA_m5C:4.12310400366156e-05 54359 chr19 41825583 41825583 1 + C A STAD 41825579 + 41825559 41825599 41 CAGGAGGAGCTCAGTGCCCGCACCCCAACCCACCAGCCCCC CAGGAGGAGCTCAGTGCCCGCACCACAACCCACCAGCCCCC < 41bp 0.413399230499159 0.811244091761281 0.28108555 0.21560806 prediction 0.622488183522562 Functional Gain - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41825579 chr19:41825583 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_101214 0 0 1 0 0 chromatin 0.500231637241702 0.500231643922015 0 1.3360626827108e-08 hm5C_site_54359 DeepMRMD:0;iRNA_m5C:1.3360626827108e-08 54360 chr2 95541385 95541385 1 + C A SARC 95541381 + 95541361 95541401 41 ACAACGTGGCGGCACTGAAGCAGGCCATCAAGGACAAAGAG ACAACGTGGCGGCACTGAAGCAGGACATCAAGGACAAAGAG < 41bp 0.569117131578583 0.880347489723827 0.8493184 0.888103 prediction 0.622460716290488 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95541381 chr2:95541385 nonsynonymous SNV 0.971 4 25 hm5C_associated_SNPs_101215 0 0 0 0 1 chromatin 0.500231639106788 0.500232000802142 0.0775691999999999 7.23390706891536e-07 hm5C_site_54360 DeepMRMD:0.0775691999999999;iRNA_m5C:7.23390706891536e-07 54361 chr6 27925319 27925319 1 + C A LUAD 27925315 + 27925295 27925335 41 AGTTATCGTGGCTGTGTAGCCCAGCTTTTCATATTTCTGGC AGTTATCGTGGCTGTGTAGCCCAGATTTTCATATTTCTGGC < 41bp 0.52000921352581 0.831228727388371 0.41870627 0.28340662 prediction 0.622439027725122 Functional Gain - OR2B6 ENSG00000124657 CDS Human protein_coding chr6:27925315 chr6:27925319 nonsynonymous SNV 0.855 3 25 hm5C_associated_SNPs_101216 0 0 0 0 0 nucleolus 0.500222560428381 0.500231575925577 0 1.80309943909052e-05 hm5C_site_54361 DeepMRMD:0;iRNA_m5C:1.80309943909052e-05 54362 chr18 76752229 76752229 1 + C A STAD 76752225 + 76752205 76752245 41 AGCTGCACCAAGCTCCCGCCCGTGCTGATCGTGCACGAGGA AGCTGCACCAAGCTCCCGCCCGTGATGATCGTGCACGAGGA < 41bp 0.43976995847383 0.811209176603579 0.4042317 0.33322918 prediction 0.622418353207158 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76752225 chr18:76752229 nonsynonymous SNV 0.361 4 25 hm5C_associated_SNPs_101217 0 0 0 0 0 exosome 0.500231643921099 0.500231644907596 0 1.97299465654055e-09 hm5C_site_54362 DeepMRMD:0;iRNA_m5C:1.97299465654055e-09 54363 chr17 61895287 61895287 1 + C A STAD 61895283 + 61895263 61895303 41 TGCCCCTGTGACCTACCCGTCTGCCGGAGCCCAAGGAGTCA TGCCCCTGTGACCTACCCGTCTGCAGGAGCCCAAGGAGTCA < 41bp 0.412636459469382 0.81119986700792 0.16813362 0.17798868 prediction 0.62239973401584 Functional Gain - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61895283 chr17:61895287 synonymous SNV . 0 25 hm5C_associated_SNPs_101218 0 0 1 0 0 chromatin 0.500231643921092 0.50023999256913 0 1.66972960742306e-05 hm5C_site_54363 DeepMRMD:0;iRNA_m5C:1.66972960742306e-05 54364 chr5 135207252 135207252 1 + C A OV 135207248 + 135207228 135207268 41 CCATTGTGAGGAATGAGGGCCTGGCGGGGCTATACCGGGGG CCATTGTGAGGAATGAGGGCCTGGAGGGGCTATACCGGGGG < 41bp 0.565001490669271 0.876200616866725 0.31852496 0.36071992 prediction 0.62239825239491 Functional Gain - SLC25A48 ENSG00000145832 CDS Human protein_coding chr5:135207248 chr5:135207252 nonsynonymous SNV 0.855 1 25 hm5C_associated_SNPs_101219 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_54364 DeepMRMD:0;iRNA_m5C:0 54365 chr10 135273198 135273198 1 + T G rs146322660 135273195 + 135273175 135273215 41 CCGCGGATCCGTCCAGGTGGCGCTGAGCCGCGTGCGCTGTC CCGCGGATCCGTCCAGGTGGCGCGGAGCCGCGTGCGCTGTC < 41bp 0.565027865480545 0.876211474030052 0.5183475 0.86730254 prediction 0.622367217099014 Functional Gain - SCART1 ENSG00000214279 ncRNA_exonic Human protein_coding chr10:135273195 chr10:135273198 . . 0 24 hm5C_associated_SNPs_101220 0 0 1 0 0 unknown 0.500231681272396 0.500231643920193 0.69791008 0 hm5C_site_54365 DeepMRMD:0.69791008;iRNA_m5C:0 54366 chr4 3503106 3503106 1 + C A rs551985660 3503102 + 3503082 3503122 41 CTCCCCGCCTCCCGGCTGTCCTGCCTGGGCCACCGCCACCC CTCCCCGCCTCCCGGCTGTCCTGCATGGGCCACCGCCACCC < 41bp 0.519949434956661 0.831121098539864 0.18452263 0.26269466 prediction 0.622343327166407 Functional Gain - DOK7 ENSG00000175920 downstream Human protein_coding chr4:3503102 chr4:3503106 . . 0 25 hm5C_associated_SNPs_101221 0 0 0 0 0 nucleus 0.500231643921104 0.500231643921092 0 0 hm5C_site_54366 DeepMRMD:0;iRNA_m5C:0 54367 chr14 24843545 24843545 1 + C A LIHC 24843541 + 24843521 24843561 41 CTGCTCTGCAGCCCAGCGCTCAGCCCAGGAGCTGCCCCAGG CTGCTCTGCAGCCCAGCGCTCAGCACAGGAGCTGCCCCAGG < 41bp 0.47780142445949 0.811165032680322 0.24324802 0.21326697 prediction 0.622330065360645 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24843541 chr14:24843545 synonymous SNV . 0 25 hm5C_associated_SNPs_101222 0 0 0 0 1 cytosol 0.500231643909246 0.500231643929353 0 4.02142763533675e-11 hm5C_site_54367 DeepMRMD:0;iRNA_m5C:4.02142763533675e-11 54368 chr17 56277633 56277633 1 + C A UCEC 56277629 + 56277609 56277649 41 GGCCTCATGGCCACCCCTGCCAAGCTGAACCGTCAGGATGC GGCCTCATGGCCACCCCTGCCAAGATGAACCGTCAGGATGC < 41bp 0.579989692296883 0.891154610378849 0.3602885 0.45104924 prediction 0.622329836163932 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56277629 chr17:56277633 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101223 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_54368 DeepMRMD:0;iRNA_m5C:0 54369 chr22 39449136 39449136 1 + C A rs10427764 39449132 + 39449112 39449152 41 CTCCCGAGTAGCTGGAATTACAGACGCCTGCCACCACGCAC CTCCCGAGTAGCTGGAATTACAGAAGCCTGCCACCACGCAC < 41bp 0.534454316711625 0.845609363165941 0.78440464 0.51588047 prediction 0.622310092908632 Functional Gain - APOBEC3F ENSG00000128394 UTR3 Human protein_coding chr22:39449132 chr22:39449136 . . 0 25 hm5C_associated_SNPs_101224 0 0 0 0 0 Nucleus 0.500231698834013 0.500231640143236 0 0 hm5C_site_54369 DeepMRMD:0;iRNA_m5C:0 54370 chr11 22248924 22248924 1 + T G SKCM 22248922 + 22248902 22248942 41 TTAGTTACCTATGCTGAAGTCTTGGGAATCAAAATGCCTAT TTAGTTACCTATGCTGAAGTCTGGGGAATCAAAATGCCTAT < 41bp 0.512976153575518 0.824103669550293 0.170567 0.55598223 prediction 0.622255031949549 Functional Gain - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22248922 chr11:22248924 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_101225 0 0 1 0 1 chromatin 0.500231643901313 0.500231640491435 0.11196446 0 hm5C_site_54370 DeepMRMD:0.11196446;iRNA_m5C:0 54371 chr6 150267771 150267771 1 + C A THCA 150267767 + 150267747 150267787 41 TTCTTGATGGGCATGGACAGCACCCTGGAGCCAAGTGCAGG TTCTTGATGGGCATGGACAGCACCATGGAGCCAAGTGCAGG < 41bp 0.416640113861461 0.81110626045082 0.06276196 0.057591915 prediction 0.62221252090164 Functional Gain - ULBP2 ENSG00000131015 CDS Human protein_coding chr6:150267767 chr6:150267771 nonsynonymous SNV 0.005 3 25 hm5C_associated_SNPs_101226 0 0 0 0 1 Endoplasmic reticulum 0.50023164378164 0.500231641213404 0 0 hm5C_site_54371 DeepMRMD:0;iRNA_m5C:0 54372 chr2 207507163 207507163 1 + C A rs114033713 207507159 + 207507139 207507179 41 ACGCGGAAGCTGGGGACAGCCACTCGCTCGGGAGCAGCCTG ACGCGGAAGCTGGGGACAGCCACTAGCTCGGGAGCAGCCTG < 41bp 0.540594097816758 0.851689619512372 0.3545832 0.15957561 prediction 0.622191043391228 Functional Gain - ADAM23;FAM237A ENSG00000235118 ncRNA_exonic Human protein_coding chr2:207507159 chr2:207507163 . . 0 25 hm5C_associated_SNPs_101227 0 0 0 0 0 unknown 0.500231643926873 0.500231643921092 0 0 hm5C_site_54372 DeepMRMD:0;iRNA_m5C:0 54373 chr21 31812843 31812843 1 + T G COAD 31812840 + 31812820 31812860 41 ACCAGCTGCCAGACATCCTGCACTTTGGCCAGATCCTATCA ACCAGCTGCCAGACATCCTGCACGTTGGCCAGATCCTATCA < 41bp 0.455919750176857 0.811073680356013 0.018254966 0.018664986 prediction 0.622147360712026 Functional Gain - KRTAP15-1 ENSG00000186970 CDS Human protein_coding chr21:31812840 chr21:31812843 synonymous SNV . 0 24 hm5C_associated_SNPs_101228 0 0 0 0 0 unknown 0.500231644834433 0.500164320715194 0 0 hm5C_site_54373 DeepMRMD:0;iRNA_m5C:0 54374 chr5 73048945 73048945 1 + C A COAD 73048941 + 73048921 73048961 41 CTTGACGGCAGGAGCACTGCCTGCCTTGGATGAGGAGCTCG CTTGACGGCAGGAGCACTGCCTGCATTGGATGAGGAGCTCG < 41bp 0.419944799639917 0.811070056655304 0.010435641 0.13677678 prediction 0.622140113310608 Functional Gain - ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73048941 chr5:73048945 synonymous SNV . 0 25 hm5C_associated_SNPs_101229 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921144 0 1.02584607475364e-13 hm5C_site_54374 DeepMRMD:0;iRNA_m5C:1.02584607475364e-13 54375 chr2 27305278 27305278 1 + C A KIRC 27305274 + 27305254 27305294 41 GGGGCAGCAGGGCCCCAGCCCCAGCCTCAGCCCCTCCGGGC GGGGCAGCAGGGCCCCAGCCCCAGACTCAGCCCCTCCGGGC < 41bp 0.448544895559905 0.811059609238323 0.82751006 0.85888165 prediction 0.622119218476646 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27305274 chr2:27305278 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_101230 0 0 0 0 0 Cytosol 0.500231643921093 0.500231643921092 0.06274318 0 hm5C_site_54375 DeepMRMD:0.06274318;iRNA_m5C:0 54376 chr17 21731555 21731555 1 + C A ESCA 21731551 + 21731531 21731571 41 GGAAGATGGCCGCACTCTTTCTGACTACAGCATCCAGAAAG GGAAGATGGCCGCACTCTTTCTGAATACAGCATCCAGAAAG < 41bp 0.558569489306444 0.869627122183665 0.21264288 0.28085935 prediction 0.622115265754444 Functional Gain - UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731551 chr17:21731555 nonsynonymous SNV 0.305 0 25 hm5C_associated_SNPs_101231 0 0 1 0 0 Ribosome 0.500231643920936 0.500231742681217 0 1.97520561018294e-07 hm5C_site_54376 DeepMRMD:0;iRNA_m5C:1.97520561018294e-07 54377 chr9 139694521 139694521 1 + T G rs4546744 139694519 + 139694499 139694539 41 ATGCACAACCTACTGATCCACCTGGTGCGGCGGCGCGGGCA ATGCACAACCTACTGATCCACCGGGTGCGGCGGCGCGGGCA < 41bp 0.46530889319528 0.811032578500971 0.17311502 0.62233704 prediction 0.622065157001941 Functional Gain - CCDC183 ENSG00000213213;ENSG00000272896 CDS Human other chr9:139694519 chr9:139694521 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_101232 0 0 0 0 1 chromatin 0.500231643921092 0.500231643912996 0.24467408 0 hm5C_site_54377 DeepMRMD:0.24467408;iRNA_m5C:0 54378 chr19 41700485 41700485 1 + C A UCEC 41700481 + 41700461 41700501 41 TACGGACCGGTGTTCACCATCTACCTGGGACCGTGGCGGCC TACGGACCGGTGTTCACCATCTACATGGGACCGTGGCGGCC < 41bp 0.39693145732982 0.811017858576262 0.28044057 0.9215282 prediction 0.622035717152524 Functional Gain - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41700481 chr19:41700485 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101233 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.8430564 0 hm5C_site_54378 DeepMRMD:0.8430564;iRNA_m5C:0 54379 chr1 11589683 11589683 1 + C A UCEC 11589679 + 11589659 11589699 41 GTATGCATGGCACCCCCTGGCTGCCTGCTTAGCTCCAGCCC GTATGCATGGCACCCCCTGGCTGCATGCTTAGCTCCAGCCC < 41bp 0.403495517315244 0.811006557189267 0.06428644 0.15610522 prediction 0.622013114378534 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589679 chr1:11589683 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_101234 0 0 0 0 2 exosome 0.500231643928574 0.500231643921092 0 0 hm5C_site_54379 DeepMRMD:0;iRNA_m5C:0 54380 chr11 55563911 55563911 1 + C A LUAD 55563907 + 55563887 55563927 41 ATGCTGAACCCTCTGATCTACAGCCTAAGGAATAAAGACGT ATGCTGAACCCTCTGATCTACAGCATAAGGAATAAAGACGT < 41bp 0.445454446727374 0.810988191396214 0.01491493 0.00815171 prediction 0.621976382792428 Functional Gain - OR5D14 ENSG00000186113 CDS Human protein_coding chr11:55563907 chr11:55563911 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_101235 0 0 0 0 0 unknown 0.500231643845731 0.500231643929937 0 1.68413061274464e-10 hm5C_site_54380 DeepMRMD:0;iRNA_m5C:1.68413061274464e-10 54381 chr7 154862792 154862792 1 + G T LUSC 154862796 - 154862776 154862816 41 GCGTACACGGAGGATGGTCGCCAGCACCAGCAGGTTCCAGG GCGTACACGGAGGATGGTCGCCAGAACCAGCAGGTTCCAGG < 41bp 0.554398520686706 0.865383370233488 0.31089067 0.8368635 prediction 0.621969699093565 Functional Gain - HTR5A ENSG00000157219;ENSG00000220575 CDS Human other chr7:154862796 chr7:154862792 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101236 0 0 0 0 1 exosome 0.500248566943721 0.500232483117518 0.673727 0 hm5C_site_54381 DeepMRMD:0.673727;iRNA_m5C:0 54382 chr5 10461362 10461362 1 + C A LUAD 10461358 + 10461338 10461378 41 GACGATCCGGAGGGCGGGCCCGCTCGCATCCCCTTCAAGAC GACGATCCGGAGGGCGGGCCCGCTAGCATCCCCTTCAAGAC < 41bp 0.414875259056068 0.810965099437814 0.10615769 0.31466472 prediction 0.621930198875627 Functional Gain - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10461358 chr5:10461362 nonsynonymous SNV 0.865 4 25 hm5C_associated_SNPs_101237 0 0 0 0 1 exosome 0.500231645786631 0.500231643921327 0 0 hm5C_site_54382 DeepMRMD:0;iRNA_m5C:0 54383 chr1 248059312 248059312 1 + C A COAD 248059308 + 248059288 248059328 41 GTGATCATGAACCCCAGGCTCTGCCGGGGCTTGGTGTCAGT GTGATCATGAACCCCAGGCTCTGCAGGGGCTTGGTGTCAGT < 41bp 0.580249218864926 0.891175730229564 0.037330836 0.32606584 prediction 0.621853022729276 Functional Gain - OR2W3 ENSG00000238243 CDS Human protein_coding chr1:248059308 chr1:248059312 synonymous SNV . 0 25 hm5C_associated_SNPs_101238 0 0 0 0 0 exosome 0.500231323198539 0.500231245221982 0 0 hm5C_site_54383 DeepMRMD:0;iRNA_m5C:0 54384 chrX 128902624 128902624 1 + C A rs17314665 128902620 + 128902600 128902640 41 AAGACCTATGGAGAAGGTCCCAGGCCCCAGGAACACAGGGC AAGACCTATGGAGAAGGTCCCAGGACCCAGGAACACAGGGC < 41bp 0.557531167452376 0.868457046821426 0.56986976 0.8448468 prediction 0.6218517587381 Functional Gain - XPNPEP2 ENSG00000122121 UTR3 Human protein_coding chrX:128902620 chrX:128902624 . . 0 25 hm5C_associated_SNPs_101239 0 0 0 0 0 exosome 0.500231643921135 0.50023164392133 0.54995408 3.90798504668055e-13 hm5C_site_54384 DeepMRMD:0.54995408;iRNA_m5C:3.90798504668055e-13 54385 chr1 41482959 41482959 1 + C A UCEC 41482955 + 41482935 41482975 41 CAGACAGCGGGCCCTGGATGCTCCCGTCGCGCCGCAGAAAC CAGACAGCGGGCCCTGGATGCTCCAGTCGCGCCGCAGAAAC < 41bp 0.578676222390421 0.889590263592537 0.14596438 0.89913934 prediction 0.621828082404231 Functional Gain - SLFNL1 ENSG00000171790 CDS Human protein_coding chr1:41482955 chr1:41482959 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_101240 0 0 1 0 0 Endoplasmic reticulum 0.50023063698621 0.500231579118657 0.79827868 1.88426489389215e-06 hm5C_site_54385 DeepMRMD:0.79827868;iRNA_m5C:1.88426489389215e-06 54386 chr3 9952559 9952559 1 + C A rs115354176 9952555 + 9952535 9952575 41 TGCCACCTGCCCAGATGGCTCGGACTTCTGGAAGTCAGTGC TGCCACCTGCCCAGATGGCTCGGAATTCTGGAAGTCAGTGC < 41bp 0.448477528338544 0.810907640373076 0.28948057 0.38230947 prediction 0.621815280746152 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9952555 chr3:9952559 nonsynonymous SNV 0.988 1 25 hm5C_associated_SNPs_101241 0 0 1 1 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54386 DeepMRMD:0;iRNA_m5C:0 54387 chr20 5297467 5297467 1 + C A rs76986139 5297463 + 5297443 5297483 41 TCCAGGCCAAGGGTGGATGCCCAGCTCCCCCACCCCACCGC TCCAGGCCAAGGGTGGATGCCCAGATCCCCCACCCCACCGC < 41bp 0.490594636039711 0.810883493831186 0.16970694 0.39520332 prediction 0.621766987662371 Functional Gain - PROKR2 ENSG00000101292 upstream Human protein_coding chr20:5297463 chr20:5297467 . . 0 25 hm5C_associated_SNPs_101242 0 0 0 0 0 exosome 0.500231642476256 0.500231641971291 0 0 hm5C_site_54387 DeepMRMD:0;iRNA_m5C:0 54388 chr7 36194304 36194304 1 + C A UCEC 36194300 + 36194280 36194320 41 GGGACCTGCTAGCGGAGCAGCAGCCTCACCACCTGGCCACA GGGACCTGCTAGCGGAGCAGCAGCATCACCACCTGGCCACA < 41bp 0.411462518538655 0.81082772446791 0.35749078 0.17551842 prediction 0.621655448935819 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36194300 chr7:36194304 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_101243 0 0 0 0 0 cytosol 0.500231643619169 0.500231594820888 0 0 hm5C_site_54388 DeepMRMD:0;iRNA_m5C:0 Logical memory (immediate recall) in normal cognition 54389 chr19 56459346 56459346 1 + C A COAD 56459342 + 56459322 56459362 41 CACTCACAGTTCTCATATTCCGCCCTGGACATTCTCTTGCT CACTCACAGTTCTCATATTCCGCCATGGACATTCTCTTGCT < 41bp 0.421448031555218 0.810814451397306 0.030605465 0.052194774 prediction 0.621628902794612 Functional Gain - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56459342 chr19:56459346 synonymous SNV . 0 25 hm5C_associated_SNPs_101244 0 0 0 0 0 unknown 0.500231584513202 0.500231345483077 0 0 hm5C_site_54389 DeepMRMD:0;iRNA_m5C:0 54390 chr19 7589988 7589988 1 + C A LUSC 7589984 + 7589964 7590004 41 TGAGTCCCTGCGACAAGTTTCGAGCCAAGGGCCGCAAGCCC TGAGTCCCTGCGACAAGTTTCGAGACAAGGGCCGCAAGCCC < 41bp 0.51353206936737 0.824346129790097 0.17181578 0.39760655 prediction 0.621628120845454 Functional Gain - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7589984 chr19:7589988 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101245 0 0 0 0 1 chromatin 0.500231639455529 0.500231630773854 0 0 hm5C_site_54390 DeepMRMD:0;iRNA_m5C:0 54391 chr1 160054311 160054311 1 + C A LUSC 160054307 + 160054287 160054327 41 GCATGTTCGTCAAGATCTCGCAGCCCAACAAGCGCGCAGCC GCATGTTCGTCAAGATCTCGCAGCACAACAAGCGCGCAGCC < 41bp 0.425951140829147 0.810792891659459 0.4835494 0.39954954 prediction 0.621585783318917 Functional Gain - KCNJ9 ENSG00000162728 CDS Human protein_coding chr1:160054307 chr1:160054311 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_101246 0 0 0 0 0 nucleus 0.500231644434084 0.500231643952722 0 0 hm5C_site_54391 DeepMRMD:0;iRNA_m5C:0 54392 chr13 70681675 70681675 1 + G T LUAD 70681679 - 70681659 70681699 41 AGCTTTGAGCACTGGGGACCCAGCCAGAGTCGCCTGCTCAA AGCTTTGAGCACTGGGGACCCAGCAAGAGTCGCCTGCTCAA < 41bp 0.564362468650712 0.875145715126591 0.054311723 0.13853478 prediction 0.621566492951757 Functional Gain - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681679 chr13:70681675 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101247 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643952803 0 6.3421712326317e-11 hm5C_site_54392 DeepMRMD:0;iRNA_m5C:6.3421712326317e-11 54393 chr12 56110759 56110759 1 + C A UCEC 56110755 + 56110735 56110775 41 CTATCACTGCAGCGACCTGCCTGACAGAAGCTTTGGTGGAT CTATCACTGCAGCGACCTGCCTGAAAGAAGCTTTGGTGGAT < 41bp 0.406964520656129 0.810752062216339 0.1622796 0.3106805 prediction 0.621504124432679 Functional Gain - BLOC1S1 ENSG00000135441;ENSG00000258311 CDS Human other chr12:56110755 chr12:56110759 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_101248 0 0 1 0 2 Ribosome 0.500243068464555 0.500231672454581 0 0 hm5C_site_54393 DeepMRMD:0;iRNA_m5C:0 54394 chr17 30687944 30687944 1 + T G SKCM 30687941 + 30687921 30687961 41 ATTAATGCCAGGTGTTCCTCCTCTGATGCCAGGAATGCCAC ATTAATGCCAGGTGTTCCTCCTCGGATGCCAGGAATGCCAC < 41bp 0.556533882670439 0.867250517207044 0.0927622 0.23171723 prediction 0.621433269073209 Functional Gain - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30687941 chr17:30687944 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_101249 0 0 1 1 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54394 DeepMRMD:0;iRNA_m5C:0 54395 chr2 121746766 121746766 1 + C A COAD 121746762 + 121746742 121746782 41 GGTGTATCCCACGGAAAGCACTGGCTTCTCTGACAACCCCA GGTGTATCCCACGGAAAGCACTGGATTCTCTGACAACCCCA < 41bp 0.557469262375419 0.868113623380871 0.4151376 0.4051413 prediction 0.621288722010904 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121746762 chr2:121746766 synonymous SNV . 0 25 hm5C_associated_SNPs_101250 0 0 1 0 0 Endoplasmic reticulum 0.500231643920916 0.500231643920289 0 0 hm5C_site_54395 DeepMRMD:0;iRNA_m5C:0 54396 chr6 26459970 26459970 1 + T G UCEC 26459968 + 26459948 26459988 41 GTGGCCCTGGTCATACACAACATCACAGCCCAGGAAAACGG GTGGCCCTGGTCATACACAACAGCACAGCCCAGGAAAACGG < 41bp 0.517333615201692 0.827971193982825 0.07637861 0.23914647 prediction 0.621275157562267 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26459968 chr6:26459970 nonsynonymous SNV 0.087 1 23 hm5C_associated_SNPs_101251 0 0 1 0 1 Endoplasmic reticulum 0.500231643918615 0.500231643980452 0 1.23672849738909e-10 hm5C_site_54396 DeepMRMD:0;iRNA_m5C:1.23672849738909e-10 54397 chr19 863170 863170 1 + C A rs564333282 863166 + 863146 863186 41 TCGGGCTCGCGCGTTTGCGGCAACCGCAAGAAGCCCGGGAT TCGGGCTCGCGCGTTTGCGGCAACAGCAAGAAGCCCGGGAT < 41bp 0.551926565238084 0.862544511681165 0.6358037 0.5695984 prediction 0.621235892886162 Functional Gain - CFD ENSG00000197766 CDS Human protein_coding chr19:863166 chr19:863170 nonsynonymous SNV 0.480 1 25 hm5C_associated_SNPs_101252 0 0 1 0 0 Cytosol 0.50023164392109 0.500231643922868 0 3.55693252629408e-12 hm5C_site_54397 DeepMRMD:0;iRNA_m5C:3.55693252629408e-12 54398 chr21 41300978 41300978 1 + T G SKCM 41300975 + 41300955 41300995 41 ACCAGAGACAGAACGTGCAGCGGTGGCCATTCAGTCTCAGT ACCAGAGACAGAACGTGCAGCGGGGGCCATTCAGTCTCAGT < 41bp 0.446678267202831 0.810611851792693 0.29045457 0.4906771 prediction 0.621223703585386 Functional Gain - PCP4 ENSG00000183036 CDS Human protein_coding chr21:41300975 chr21:41300978 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_101253 0 0 0 0 1 Endoplasmic reticulum 0.500248030247488 0.500141614576731 0 0 hm5C_site_54398 DeepMRMD:0;iRNA_m5C:0 54399 chr1 153747848 153747848 1 + C A LUAD 153747844 + 153747824 153747864 41 TGGGTGGGAATGGGCGTGTGCCAGCGCACGCGCGCTCCCTG TGGGTGGGAATGGGCGTGTGCCAGAGCACGCGCGCTCCCTG < 41bp 0.527784604593226 0.838366400926478 0.812011 0.85313475 prediction 0.621163592666503 Functional Gain - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153747844 chr1:153747848 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_101254 0 0 0 0 0 nucleoplasm 0.500231643756312 0.500230963933817 0.0822475 0 hm5C_site_54399 DeepMRMD:0.0822475;iRNA_m5C:0 54400 chr2 234628268 234628268 1 + C A KIRC 234628264 + 234628244 234628284 41 GACTTTGTGATGGACTACCCCAGGCCGATCATGCCCAACAT GACTTTGTGATGGACTACCCCAGGACGATCATGCCCAACAT < 41bp 0.445250780649517 0.810548098092059 0.8045887 0.84050536 prediction 0.621096196184117 Functional Gain - UGT1A4 ENSG00000244474 CDS Human protein_coding chr2:234628264 chr2:234628268 nonsynonymous SNV 0.934 3 25 hm5C_associated_SNPs_101255 0 0 0 0 1 exosome 0.500231643926553 0.500231683924559 0.0718333199999999 7.99960129249655e-08 hm5C_site_54400 DeepMRMD:0.0718333199999999;iRNA_m5C:7.99960129249655e-08 54401 chr7 143793035 143793035 1 + C A rs80128486 143793031 + 143793011 143793051 41 AAGATCCTTTCCCTGTTTTACAGCCTTTTCAACCCGATCCT AAGATCCTTTCCCTGTTTTACAGCATTTTCAACCCGATCCT < 41bp 0.555741040134613 0.866267192436093 0.0544568 0.044178754 prediction 0.621052304602961 Functional Gain - OR2A12 ENSG00000221858 CDS Human protein_coding chr7:143793031 chr7:143793035 nonsynonymous SNV 0.920 0 25 hm5C_associated_SNPs_101256 0 0 0 0 0 unknown 0.500231643921092 0.500231643921099 0 1.35447209004269e-14 hm5C_site_54401 DeepMRMD:0;iRNA_m5C:1.35447209004269e-14 54402 chr5 169461447 169461447 1 + T G STAD 169461444 + 169461424 169461464 41 GCACCCAACCATTGCCAAGTCGGTGGAGAACTTCGTGAACC GCACCCAACCATTGCCAAGTCGGGGGAGAACTTCGTGAACC < 41bp 0.536575128034435 0.847096306852206 0.34910807 0.9004563 prediction 0.621042357635541 Functional Gain - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169461444 chr5:169461447 nonsynonymous SNV 0.973 1 24 hm5C_associated_SNPs_101257 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.8009126 0 hm5C_site_54402 DeepMRMD:0.8009126;iRNA_m5C:0 54403 chr1 24069958 24069958 1 + C A rs556867091 24069954 + 24069934 24069974 41 TGCGGCCCGAGGACGCGACGCGAGCCCAGTTCCGGCGAGGA TGCGGCCCGAGGACGCGACGCGAGACCAGTTCCGGCGAGGA < 41bp 0.552679882769589 0.863182244287592 0.18281025 0.56766886 prediction 0.621004723036006 Functional Gain - ELOA ENSG00000011007 CDS Human protein_coding chr1:24069954 chr1:24069958 nonsynonymous SNV 0.957 1 25 hm5C_associated_SNPs_101258 0 0 0 0 0 unknown 0.500231644566972 0.500231643929848 0.13533772 0 hm5C_site_54403 DeepMRMD:0.13533772;iRNA_m5C:0 54404 chr12 113704142 113704142 1 + C A rs117386743 113704138 + 113704118 113704158 41 TGTGCGAGGCCCCCGCCGTCCCCGCACTCCGGCTTGGCATC TGTGCGAGGCCCCCGCCGTCCCCGAACTCCGGCTTGGCATC < 41bp 0.412456626646178 0.810461807712541 0.070276916 0.22167444 prediction 0.620923615425082 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113704138 chr12:113704142 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_101259 0 0 0 0 1 chromatin 0.500231643921157 0.500231643929458 0 1.6600942842615e-11 hm5C_site_54404 DeepMRMD:0;iRNA_m5C:1.6600942842615e-11 54405 chrX 70823472 70823472 1 + C A LUAD 70823468 + 70823448 70823488 41 GGAGTGTTGTCATGTGAAGCCTGCCATCCAGGAACCTCCAA GGAGTGTTGTCATGTGAAGCCTGCAATCCAGGAACCTCCAA < 41bp 0.415101167103412 0.810456634621706 0.010054588 0.07236415 prediction 0.620913269243412 Functional Gain - GCNA ENSG00000147174 CDS Human protein_coding chrX:70823468 chrX:70823472 synonymous SNV . 0 25 hm5C_associated_SNPs_101260 0 0 0 0 1 unknown 0.500231643921093 0.50023355438223 0 3.82092227591002e-06 hm5C_site_54405 DeepMRMD:0;iRNA_m5C:3.82092227591002e-06 54406 chr5 3599650 3599650 1 + C A LIHC 3599646 + 3599626 3599666 41 GAACAAGGTGACATGGGGAGCGCGCAGCAAGGACCAGGAAG GAACAAGGTGACATGGGGAGCGCGAAGCAAGGACCAGGAAG < 41bp 0.571622896935252 0.882066728475786 0.79867256 0.8356447 prediction 0.620887663081067 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3599646 chr5:3599650 synonymous SNV . 0 25 hm5C_associated_SNPs_101261 0 0 0 0 0 exosome 0.500231643923703 0.500231643921092 0.0739442800000001 0 hm5C_site_54406 DeepMRMD:0.0739442800000001;iRNA_m5C:0 54407 chr9 138466899 138466899 1 + T G rs184324078 138466896 + 138466876 138466916 41 GGCTGAGCCTGCTTTCCATGCTGTGAGCCCAGGGGACCCAG GGCTGAGCCTGCTTTCCATGCTGGGAGCCCAGGGGACCCAG < 41bp 0.541881389522421 0.852314307899806 0.16681176 0.8133709 prediction 0.620865836754771 Functional Gain - LINC01502 ENSG00000237339 ncRNA_exonic Human lincRNA chr9:138466896 chr9:138466899 . . 0 24 hm5C_associated_SNPs_101262 0 0 0 0 1 unknown 0.500231643921093 0.500231643921092 0.6267418 0 hm5C_site_54407 DeepMRMD:0.6267418;iRNA_m5C:0 54408 chr2 206605378 206605378 1 + C A rs139711818 206605374 + 206605354 206605394 41 CTCCGGCTGGAGCTCTTCGGCTGCCGGGTCACAGGTGAGGT CTCCGGCTGGAGCTCTTCGGCTGCAGGGTCACAGGTGAGGT < 41bp 0.410185735210917 0.810413579660226 0.23039421 0.24586931 prediction 0.620827159320452 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206605374 chr2:206605378 synonymous SNV . 0 25 hm5C_associated_SNPs_101263 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_54408 DeepMRMD:0;iRNA_m5C:0 54409 chr22 40365518 40365518 1 + T G LUSC 40365515 + 40365495 40365535 41 GCATCGGAGACACACAGACCCAGTGCAGCTCCAGGCGGCAG GCATCGGAGACACACAGACCCAGGGCAGCTCCAGGCGGCAG < 41bp 0.57143072143286 0.881835096786689 0.7979653 0.90946203 prediction 0.620808750707659 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40365515 chr22:40365518 nonsynonymous SNV 0.967 0 24 hm5C_associated_SNPs_101264 0 0 1 0 1 chromatin 0.500231643926784 0.500231650061982 0.22299346 1.22703966987103e-08 hm5C_site_54409 DeepMRMD:0.22299346;iRNA_m5C:1.22703966987103e-08 54410 chr16 24372732 24372732 1 + C A BRCA 24372728 + 24372708 24372748 41 TCAGCCAACGCCGGAGACCCCGGGCAGCGTGACTCCAAAAA TCAGCCAACGCCGGAGACCCCGGGAAGCGTGACTCCAAAAA < 41bp 0.574633747000496 0.885023089881609 0.7753705 0.8917547 prediction 0.620778685762225 Functional Gain - CACNG3 ENSG00000006116 CDS Human protein_coding chr16:24372728 chr16:24372732 nonsynonymous SNV 0.935 2 25 hm5C_associated_SNPs_101265 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921093 0.2327684 6.66133814775094e-16 hm5C_site_54410 DeepMRMD:0.2327684;iRNA_m5C:6.66133814775094e-16 54411 chr4 42403163 42403163 1 + C A LUAD 42403159 + 42403139 42403179 41 TCGCAGCAGCCAATCCGCTTCTCACTCCGCAGCTATCAGAC TCGCAGCAGCCAATCCGCTTCTCAATCCGCAGCTATCAGAC < 41bp 0.400890903307273 0.810352273186615 0.069417864 0.18722546 prediction 0.620704546373229 Functional Gain - SHISA3 ENSG00000178343 CDS Human protein_coding chr4:42403159 chr4:42403163 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_101266 0 0 0 0 0 exosome 0.500231643995724 0.500231643924151 0 0 hm5C_site_54411 DeepMRMD:0;iRNA_m5C:0 54412 chr3 186572185 186572185 1 + T G COAD 186572182 + 186572162 186572202 41 TCTTCTACAATCAGCAAAACCACTATGATGGCTCCACTGGT TCTTCTACAATCAGCAAAACCACGATGATGGCTCCACTGGT < 41bp 0.477934749187785 0.81034364465729 0.085807264 0.07129735 prediction 0.620687289314581 Functional Gain - ADIPOQ ENSG00000181092 CDS Human protein_coding chr3:186572182 chr3:186572185 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_101267 0 0 0 0 0 exosome 0.500231568956024 0.500231940065403 0 7.42218758675861e-07 hm5C_site_54412 DeepMRMD:0;iRNA_m5C:7.42218758675861e-07 54413 chr6 31675283 31675283 1 + C A rs17200983 31675279 + 31675259 31675299 41 CCTTGGGGGAGGCAGTAGAGCTGCCATGTCCCTCACCACCT CCTTGGGGGAGGCAGTAGAGCTGCAATGTCCCTCACCACCT < 41bp 0.568604220828609 0.878939951421544 0.34797806 0.3967422 prediction 0.620671461185869 Functional Gain - LY6G6F ENSG00000204424;ENSG00000250641 CDS Human other chr6:31675279 chr6:31675283 nonsynonymous SNV 0.771 3 25 hm5C_associated_SNPs_101268 0 0 0 0 1 Endoplasmic reticulum 0.500231643919383 0.500231643921686 0 4.60698146298455e-12 hm5C_site_54413 DeepMRMD:0;iRNA_m5C:4.60698146298455e-12 54414 chr17 51901871 51901871 1 + C A LUSC 51901867 + 51901847 51901887 41 TTGGGTCAGAACAAGCCTCACACCCCATTCAGAGCCAGCAA TTGGGTCAGAACAAGCCTCACACCACATTCAGAGCCAGCAA < 41bp 0.40571512898526 0.810323585009631 0.0069672167 0.018938035 prediction 0.620647170019261 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901867 chr17:51901871 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_101269 0 0 0 0 0 exosome 0.500231643923431 0.500232298245188 0 1.30864351355342e-06 hm5C_site_54414 DeepMRMD:0;iRNA_m5C:1.30864351355342e-06 54415 chrX 128873217 128873217 1 + C A LUSC 128873213 + 128873193 128873233 41 GCCCGGGCTCACTGGGGCTGCTGCCCCTGGCTGGTCCTCCT GCCCGGGCTCACTGGGGCTGCTGCACCTGGCTGGTCCTCCT < 41bp 0.418894413476581 0.810303158849863 0.55278784 0.82605726 prediction 0.620606317699726 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128873213 chrX:128873217 nonsynonymous SNV 0.993 0 25 hm5C_associated_SNPs_101270 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.54653884 0 hm5C_site_54415 DeepMRMD:0.54653884;iRNA_m5C:0 54416 chr13 108922424 108922424 1 + C A COAD 108922420 + 108922400 108922440 41 CTGCTGGCACTGCTGTCTTGCTGCCTCACGGTGGTGTCTTT CTGCTGGCACTGCTGTCTTGCTGCATCACGGTGGTGTCTTT < 41bp 0.57473501997346 0.885004239096787 0.2188313 0.1433123 prediction 0.620538438246655 Functional Gain - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108922420 chr13:108922424 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_101271 0 0 0 0 0 Endoplasmic reticulum 0.500516446235784 0.502472687211752 0 0.00391248195193716 hm5C_site_54416 DeepMRMD:0;iRNA_m5C:0.00391248195193716 54417 chr6 159654439 159654439 1 + C A COAD 159654435 + 159654415 159654455 41 CGCGGACACGGAGGGTCATTCTCCCAAAGCACAGCCAGGGT CGCGGACACGGAGGGTCATTCTCCAAAAGCACAGCCAGGGT < 41bp 0.397784549508038 0.810263516140347 0.3341176 0.9741931 prediction 0.620527032280694 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159654435 chr6:159654439 synonymous SNV . 0 25 hm5C_associated_SNPs_101272 0 0 0 0 0 Endoplasmic reticulum 0.500231643906853 0.500231671434178 0.9483862 5.50546497279925e-08 hm5C_site_54417 DeepMRMD:0.9483862;iRNA_m5C:5.50546497279925e-08 54418 chrX 48687962 48687962 1 + C A LUAD 48687958 + 48687938 48687978 41 GGCCACCTGGGGCCCTCACCCCGCCCAGCCCCTTGTCCTCG GGCCACCTGGGGCCCTCACCCCGCACAGCCCCTTGTCCTCG < 41bp 0.415158940234397 0.810240355561284 0.5073362 0.1704633 prediction 0.620480711122568 Functional Gain - ERAS ENSG00000187682 CDS Human protein_coding chrX:48687958 chrX:48687962 synonymous SNV . 0 25 hm5C_associated_SNPs_101273 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0 1.11022302462516e-15 hm5C_site_54418 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 54419 chr19 43920610 43920610 1 + C A THCA 43920606 + 43920586 43920626 41 AATTGTCCAGCACTCTTCACCTCCCGGCCTGATCGTGACCT AATTGTCCAGCACTCTTCACCTCCAGGCCTGATCGTGACCT < 41bp 0.407065439085946 0.810238539645419 0.062153757 0.8900791 prediction 0.620477079290839 Functional Gain - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43920606 chr19:43920610 synonymous SNV . 0 25 hm5C_associated_SNPs_101274 0 0 0 0 2 unknown 0.500231644280522 0.500231645549875 0.7801582 2.53870502398001e-09 hm5C_site_54419 DeepMRMD:0.7801582;iRNA_m5C:2.53870502398001e-09 54420 chr12 101017929 101017929 1 + C A COAD 101017925 + 101017905 101017945 41 CCCCCAAGGCCAAGGTTATTCCAGCCCAGAATTCAGCAGAT CCCCCAAGGCCAAGGTTATTCCAGACCAGAATTCAGCAGAT < 41bp 0.43451537162417 0.810214579918245 0.12353578 0.18501452 prediction 0.62042915983649 Functional Gain - GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101017925 chr12:101017929 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_101275 0 0 0 0 0 Cytosol 0.500231643971461 0.500231643920905 0 0 hm5C_site_54420 DeepMRMD:0;iRNA_m5C:0 54421 chr13 21714807 21714807 1 + T G KIRC 21714804 + 21714784 21714824 41 TAAGAAGGAGCCAGAGAAACCGATCGACCGCGAGAAGGTGA TAAGAAGGAGCCAGAGAAACCGAGCGACCGCGAGAAGGTGA < 41bp 0.550497339706397 0.860703726829086 0.5789857 0.8738282 prediction 0.620412774245377 Functional Gain - SAP18 ENSG00000150459 CDS Human protein_coding chr13:21714804 chr13:21714807 nonsynonymous SNV 0.162 2 24 hm5C_associated_SNPs_101276 0 0 1 0 1 Cytosol 0.500231647721016 0.500231644232798 0.589685 0 hm5C_site_54421 DeepMRMD:0.589685;iRNA_m5C:0 54422 chr11 119252601 119252601 1 + C A rs112950413 119252597 + 119252577 119252617 41 ACAGAGGTGGACTGGAATGTCACACGACGGGGCAGCTGGAA ACAGAGGTGGACTGGAATGTCACAAGACGGGGCAGCTGGAA < 41bp 0.459411622753279 0.8101996499962 0.1384474 0.20220199 prediction 0.620399299992399 Functional Gain - USP2-AS1 ENSG00000245248 ncRNA_exonic Human antisense chr11:119252597 chr11:119252601 . . 0 25 hm5C_associated_SNPs_101277 0 0 1 0 1 unknown 0.500231639056844 0.500231643921092 0 9.72849645286544e-09 hm5C_site_54422 DeepMRMD:0;iRNA_m5C:9.72849645286544e-09 54423 chr19 50476824 50476824 1 + C A rs62115166 50476820 + 50476800 50476840 41 GAGCGGCCGTGTTTCCTCTGCAGGCTTTGCATGGTCTGTCC GAGCGGCCGTGTTTCCTCTGCAGGATTTGCATGGTCTGTCC < 41bp 0.49673796187167 0.81019224878288 0.9040764 0.9239174 prediction 0.620384497565761 Functional Gain - SIGLEC16 ENSG00000161643 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:50476820 chr19:50476824 . . 0 25 hm5C_associated_SNPs_101278 0 0 0 0 1 unknown 0.500231643924377 0.500231643921092 0.039682 0 hm5C_site_54423 DeepMRMD:0.039682;iRNA_m5C:0 54424 chr22 50961497 50961497 1 + C A LIHC 50961493 + 50961473 50961513 41 ACCTATGGGGACCAGCTGGTCTCACGGTTCCCCCAGCTCAA ACCTATGGGGACCAGCTGGTCTCAAGGTTCCCCCAGCTCAA < 41bp 0.405561634586554 0.810150654907493 0.11159253 0.054417133 prediction 0.620301309814985 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50961493 chr22:50961497 synonymous SNV . 0 25 hm5C_associated_SNPs_101279 0 0 1 0 2 Cytosol 0.500231643803473 0.500231643921093 0 2.35239827617306e-10 hm5C_site_54424 DeepMRMD:0;iRNA_m5C:2.35239827617306e-10 54425 chr12 21331589 21331589 1 + C A LUAD 21331585 + 21331565 21331605 41 GCTTCGTGGAATAGGGGAGACTCCCATAGTACCATTGGGGC GCTTCGTGGAATAGGGGAGACTCCAATAGTACCATTGGGGC < 41bp 0.397768669978491 0.810150039899327 0.21525583 0.9686908 prediction 0.620300079798655 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21331585 chr12:21331589 synonymous SNV . 0 25 hm5C_associated_SNPs_101280 0 0 0 0 2 exosome 0.500231647435489 0.500231643854311 0.9373816 0 hm5C_site_54425 DeepMRMD:0.9373816;iRNA_m5C:0 54426 chr9 139977209 139977209 1 + C A rs7851653 139977205 + 139977185 139977225 41 GCCCAGACTGTCCCCAGACTCCCCCGAGACCTGCCAGCCCC GCCCAGACTGTCCCCAGACTCCCCAGAGACCTGCCAGCCCC < 41bp 0.440486780138933 0.810097998544306 0.07630834 0.16495663 prediction 0.620195997088613 Functional Gain - UAP1L1 ENSG00000197355 UTR3 Human protein_coding chr9:139977205 chr9:139977209 . . 0 25 hm5C_associated_SNPs_101281 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_54426 DeepMRMD:0;iRNA_m5C:0 54427 chr7 74197927 74197927 1 + C A STAD 74197923 + 74197903 74197943 41 TGGATCCCAGCGTCCTTCCTCGAGCCCCTGGACAGTCCTGA TGGATCCCAGCGTCCTTCCTCGAGACCCTGGACAGTCCTGA < 41bp 0.419930474929203 0.810097883032415 0.87653637 0.8777876 prediction 0.62019576606483 Functional Gain - NCF1 ENSG00000158517 CDS Human protein_coding chr7:74197923 chr7:74197927 nonsynonymous SNV 0.791 4 25 hm5C_associated_SNPs_101282 0 0 0 0 1 exosome 0.500231643921093 0.500231643921093 0.0025024600000001 0 hm5C_site_54427 DeepMRMD:0.0025024600000001;iRNA_m5C:0 54428 chr20 30602788 30602788 1 + C A LUAD 30602784 + 30602764 30602804 41 TGTAGGAGCAGCGTGAGCCGCCGGCCCCTGCACTCGATGCC TGTAGGAGCAGCGTGAGCCGCCGGACCCTGCACTCGATGCC < 41bp 0.428718250435665 0.810076702511208 0.30529177 0.53888893 prediction 0.620153405022417 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602784 chr20:30602788 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_101283 0 0 0 0 2 exosome 0.5002316439211 0.500231643937171 0.0777778600000001 3.21427329197377e-11 hm5C_site_54428 DeepMRMD:0.0777778600000001;iRNA_m5C:3.21427329197377e-11 54429 chr20 42979345 42979345 1 + C A LUSC 42979341 + 42979321 42979361 41 CCCGTACAAGATGGGAAAGCCGTGCTCCTCCTGTCCCCCCA CCCGTACAAGATGGGAAAGCCGTGATCCTCCTGTCCCCCCA < 41bp 0.56688577674939 0.876920092912959 0.27095973 0.3633422 prediction 0.620068632327136 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42979341 chr20:42979345 stopgain 0.010 1 25 hm5C_associated_SNPs_101284 0 0 0 0 1 cytosol 0.500231388228471 0.500231648532205 0 5.20607469356449e-07 hm5C_site_54429 DeepMRMD:0;iRNA_m5C:5.20607469356449e-07 54430 chr1 1221560 1221560 1 + T G rs577048886 1221557 + 1221537 1221577 41 TGCTGGCAGCTGGGGCTCCTCTTTGAGCGTCACTGGCACCG TGCTGGCAGCTGGGGCTCCTCTTGGAGCGTCACTGGCACCG < 41bp 0.432411923944507 0.810033303189977 0.19558272 0.366647 prediction 0.620066606379955 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1221557 chr1:1221560 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_101285 0 0 0 0 1 exosome 0.500221538770136 0.500231638192385 0 2.01988444985535e-05 hm5C_site_54430 DeepMRMD:0;iRNA_m5C:2.01988444985535e-05 54431 chr16 86544601 86544601 1 + C A COAD 86544597 + 86544577 86544617 41 GGGCTCCTTTCGGCGGCGGCCGCGCGGCTTCCGAAGGAAAT GGGCTCCTTTCGGCGGCGGCCGCGAGGCTTCCGAAGGAAAT < 41bp 0.573592019778341 0.883610602345252 0.47913212 0.76550037 prediction 0.620037165133821 Functional Gain - FOXF1 ENSG00000103241 CDS Human protein_coding chr16:86544597 chr16:86544601 synonymous SNV . 0 25 hm5C_associated_SNPs_101286 0 0 0 0 0 Cytoplasm 0.50023164392111 0.500231643921093 0.53100074 0 hm5C_site_54431 DeepMRMD:0.53100074;iRNA_m5C:0 54432 chr19 55592800 55592800 1 + C A LIHC 55592796 + 55592776 55592816 41 GACCTCGAGCAACGCTGACTCGGCCTCCCCGGACCTGGGTC GACCTCGAGCAACGCTGACTCGGCATCCCCGGACCTGGGTC < 41bp 0.57739612833104 0.887370084288803 0.8908334 0.8955034 prediction 0.619947911915525 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55592796 chr19:55592800 synonymous SNV . 0 25 hm5C_associated_SNPs_101287 0 0 0 0 1 Cytosol 0.500231643921174 0.500231643926794 0.0093399999999999 1.124011994591e-11 hm5C_site_54432 DeepMRMD:0.0093399999999999;iRNA_m5C:1.124011994591e-11 54433 chr1 159166202 159166202 1 + G T SARC 159166206 - 159166186 159166226 41 TCACAGTGTAGCAACAGCTTCTGGCCCTCACGAGGATGGGG TCACAGTGTAGCAACAGCTTCTGGACCTCACGAGGATGGGG < 41bp 0.434482152791707 0.80994743523018 0.075873226 0.08614355 prediction 0.619894870460359 Functional Gain - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159166206 chr1:159166202 nonsynonymous SNV 0.927 4 25 hm5C_associated_SNPs_101288 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54433 DeepMRMD:0;iRNA_m5C:0 54434 chr21 38095410 38095410 1 + C A LIHC 38095406 + 38095386 38095426 41 TGTCTTGGCGAAAAGGAACGCGGGCCTGACCTGCAGCGGAT TGTCTTGGCGAAAAGGAACGCGGGACTGACCTGCAGCGGAT < 41bp 0.578326635581048 0.888264723856055 0.8933023 0.8992684 prediction 0.619876176550014 Functional Gain - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38095406 chr21:38095410 synonymous SNV . 0 25 hm5C_associated_SNPs_101289 0 0 1 0 1 nucleus 0.500231643921092 0.500231643921092 0.0119321999999999 0 hm5C_site_54434 DeepMRMD:0.0119321999999999;iRNA_m5C:0 54435 chr12 67706402 67706402 1 + T G ESCA 67706399 + 67706379 67706419 41 CTTACAGGTAAAGGCAAACTCAGTAAAGCAGGAGTTTGAAA CTTACAGGTAAAGGCAAACTCAGGAAAGCAGGAGTTTGAAA < 41bp 0.467624868087087 0.809930431048675 0.14409387 0.883469 prediction 0.619860862097351 Functional Gain - CAND1 ENSG00000111530 CDS Human protein_coding chr12:67706399 chr12:67706402 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_101290 0 0 1 0 1 Nucleus 0.500231644058057 0.500231643921192 0.766938 0 hm5C_site_54435 DeepMRMD:0.766938;iRNA_m5C:0 54436 chr1 155838163 155838163 1 + T A LUSC 155838159 + 155838139 155838179 41 ACCCCTGGGGAGAGCAAAACCACCTCTCCATCATCTCCAGA ACCCCTGGGGAGAGCAAAACCACCACTCCATCATCTCCAGA < 41bp 0.506510508390133 0.816435154676604 0.033412725 0.1621013 prediction 0.619849292572942 Functional Gain - SYT11 ENSG00000132718 CDS Human protein_coding chr1:155838159 chr1:155838163 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101291 0 0 1 0 0 Nucleus 0.50023164392071 0.500231643920281 0 0 hm5C_site_54436 DeepMRMD:0;iRNA_m5C:0 54437 chr19 15164574 15164574 1 + C A CESC 15164570 + 15164550 15164590 41 CAGGAAGAGCTGGAAAAATTCCAGCAGGCCATCGATTCCCG CAGGAAGAGCTGGAAAAATTCCAGAAGGCCATCGATTCCCG < 41bp 0.433423796406525 0.809911612411878 0.23617148 0.40838745 prediction 0.619823224823755 Functional Gain - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164570 chr19:15164574 nonsynonymous SNV 0.890 0 25 hm5C_associated_SNPs_101292 0 0 0 0 1 exosome 0.500231643923776 0.50023164413597 0 4.24387636144274e-10 hm5C_site_54437 DeepMRMD:0;iRNA_m5C:4.24387636144274e-10 54438 chr6 106554881 106554881 1 + C A LUAD 106554877 + 106554857 106554897 41 ATACCAATGCAAGGTGTGCCCTGCCAAGTTCACCCAGTTTG ATACCAATGCAAGGTGTGCCCTGCAAAGTTCACCCAGTTTG < 41bp 0.414442425227821 0.809910864999842 0.013703197 0.064395726 prediction 0.619821729999684 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106554877 chr6:106554881 synonymous SNV . 0 25 hm5C_associated_SNPs_101293 0 0 0 0 1 cytosol 0.500231599942774 0.500231643921093 0 8.79566373068741e-08 hm5C_site_54438 DeepMRMD:0;iRNA_m5C:8.79566373068741e-08 54439 chr7 155251506 155251506 1 + C A rs552755714 155251502 + 155251482 155251522 41 CCGGCGCGGGCGGGCCGCTCCCAGCCGCCGGCAGCGACTCT CCGGCGCGGGCGGGCCGCTCCCAGACGCCGGCAGCGACTCT < 41bp 0.56082178631773 0.870731575052381 0.4117315 0.72728634 prediction 0.6198195774693 Functional Gain - EN2 ENSG00000164778 CDS Human protein_coding chr7:155251502 chr7:155251506 nonsynonymous SNV 0.043 1 25 hm5C_associated_SNPs_101294 0 0 1 0 0 Cytosol 0.500231643901736 0.500231643477513 0.45457268 0 hm5C_site_54439 DeepMRMD:0.45457268;iRNA_m5C:0 54440 chr11 64875906 64875906 1 + C A KIRC 64875902 + 64875882 64875922 41 CGGCCTCTGCCAGGTGGCGGCGGCCTACCAGGAGCTGTTTG CGGCCTCTGCCAGGTGGCGGCGGCATACCAGGAGCTGTTTG < 41bp 0.566140263338982 0.876013736988051 0.83371794 0.89859223 prediction 0.619746947298138 Functional Gain - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64875902 chr11:64875906 synonymous SNV . 0 25 hm5C_associated_SNPs_101295 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921093 0.12974858 1.55431223447522e-15 hm5C_site_54440 DeepMRMD:0.12974858;iRNA_m5C:1.55431223447522e-15 54441 chr6 348192 348192 1 + T G COAD 348190 + 348170 348210 41 TGGGAGGATGCCCTGCACACCGTGCGTGCTGGGAGATCCTG TGGGAGGATGCCCTGCACACCGGGCGTGCTGGGAGATCCTG < 41bp 0.5247916460045 0.834650980206648 0.07505882 0.6969099 prediction 0.619718668404297 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348190 chr6:348192 nonsynonymous SNV 0.806 5 23 hm5C_associated_SNPs_101296 0 0 1 0 2 Ribosome 0.50023164375165 0.500231643946094 0.3938198 3.8888714470886e-10 hm5C_site_54441 DeepMRMD:0.3938198;iRNA_m5C:3.8888714470886e-10 54442 chr22 23438214 23438214 1 + C A LUAD 23438210 + 23438190 23438230 41 ACGCTGTGCAGCTCTTTGCGCTGACGGGCCCCGCTGAGAGC ACGCTGTGCAGCTCTTTGCGCTGAAGGGCCCCGCTGAGAGC < 41bp 0.422716136583906 0.809847561634732 0.1450288 0.18860644 prediction 0.619695123269463 Functional Gain - GNAZ ENSG00000128266 CDS Human protein_coding chr22:23438210 chr22:23438214 nonsynonymous SNV 0.006 3 25 hm5C_associated_SNPs_101297 0 0 0 0 0 Ribosome 0.500231643799945 0.500231643440393 0 0 hm5C_site_54442 DeepMRMD:0;iRNA_m5C:0 54443 chr12 122677475 122677475 1 + C A rs528169806 122677471 + 122677451 122677491 41 ATCTCGGGGCCTTCGACCATCTTGCAGATGCCGAGGGCCTC ATCTCGGGGCCTTCGACCATCTTGAAGATGCCGAGGGCCTC < 41bp 0.416551099880965 0.809845826245898 0.1505549 0.17659006 prediction 0.619691652491796 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122677471 chr12:122677475 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_101298 0 0 0 0 0 cytosol 0.500231643921301 0.500231643883692 0 0 hm5C_site_54443 DeepMRMD:0;iRNA_m5C:0 54444 chr11 2411684 2411684 1 + C A BLCA 2411680 + 2411660 2411700 41 CTGGGTGTGGCCCTGTGGCTCCGCCATGACCCGCAGACCAC CTGGGTGTGGCCCTGTGGCTCCGCAATGACCCGCAGACCAC < 41bp 0.419024329079365 0.809842146740937 0.2672401 0.12030923 prediction 0.619684293481874 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2411680 chr11:2411684 nonsynonymous SNV 0.960 2 25 hm5C_associated_SNPs_101299 0 0 1 0 2 Ribosome 0.500231643921092 0.500231596018203 0 0 hm5C_site_54444 DeepMRMD:0;iRNA_m5C:0 54445 chr11 4674151 4674151 1 + C A LIHC 4674147 + 4674127 4674167 41 ACCGCTATGTGGCCATCTGTCACCCACTGCGCCATGCCACA ACCGCTATGTGGCCATCTGTCACCAACTGCGCCATGCCACA < 41bp 0.584899421669932 0.894736514460355 0.02209115 0.09348118 prediction 0.619674185580846 Functional Gain - OR51E1 ENSG00000180785 CDS Human protein_coding chr11:4674147 chr11:4674151 nonsynonymous SNV 0.913 3 25 hm5C_associated_SNPs_101300 0 0 0 0 0 exosome 0.500231643919845 0.500231643522721 0 0 hm5C_site_54445 DeepMRMD:0;iRNA_m5C:0 54446 chr5 5303416 5303416 1 + C A rs77172736 5303412 + 5303392 5303432 41 GGAACTGGAGTGCCTGCAGTCGGACGTGTGGCGGGGGTGCC GGAACTGGAGTGCCTGCAGTCGGAAGTGTGGCGGGGGTGCC < 41bp 0.571783982579717 0.881617354962352 0.90583974 0.90636265 prediction 0.61966674476527 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303412 chr5:5303416 nonsynonymous SNV 0.066 4 25 hm5C_associated_SNPs_101301 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.00104582000000009 0 hm5C_site_54446 DeepMRMD:0.00104582000000009;iRNA_m5C:0 54447 chr3 184056750 184056750 1 + T G rs557011163 184056747 + 184056727 184056767 41 GCTGGAGGCTACTGGCGCCACCCTGGGGGCCCTGTCAGCCA GCTGGAGGCTACTGGCGCCACCCGGGGGGCCCTGTCAGCCA < 41bp 0.557546186355384 0.867354290004629 0.23877919 0.5518227 prediction 0.61961620729849 Functional Gain - FAM131A ENSG00000175182 UTR5 Human protein_coding chr3:184056747 chr3:184056750 . . 0 24 hm5C_associated_SNPs_101302 0 0 0 0 0 chromatin 0.500231643918416 0.500231643920598 0.1036454 4.36495284361627e-12 hm5C_site_54447 DeepMRMD:0.1036454;iRNA_m5C:4.36495284361627e-12 54448 chr3 148563395 148563395 1 + T G OV 148563392 + 148563372 148563412 41 TACTCATATGCTTACAAACTCGGTGAGAACAATGCTGAGTT TACTCATATGCTTACAAACTCGGGGAGAACAATGCTGAGTT < 41bp 0.45136609800849 0.809806353317822 0.4099565 0.92423594 prediction 0.619612706635644 Functional Gain - CPB1 ENSG00000153002 CDS Human protein_coding chr3:148563392 chr3:148563395 synonymous SNV . 0 24 hm5C_associated_SNPs_101303 0 0 0 0 1 exosome 0.500231661568523 0.500231647527593 0.84847188 0 hm5C_site_54448 DeepMRMD:0.84847188;iRNA_m5C:0 54449 chr19 15769359 15769359 1 + C A rs61734306 15769355 + 15769335 15769375 41 TCACAACCCAGCCGTGTGGCCGGACCCTGAGGTGCGGGCCC TCACAACCCAGCCGTGTGGCCGGAACCTGAGGTGCGGGCCC < 41bp 0.420928899211034 0.809802628999279 0.42863497 0.88744223 prediction 0.619605257998559 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769355 chr19:15769359 nonsynonymous SNV 0.735 2 25 hm5C_associated_SNPs_101304 0 0 1 0 2 exosome 0.500231643921092 0.500231643921092 0.77488446 0 hm5C_site_54449 DeepMRMD:0.77488446;iRNA_m5C:0 54450 chr12 122497869 122497869 1 + T G rs76338977 122497867 + 122497847 122497887 41 CCAGATGGACGTGCAAAGCCCTTGGAATTTTCTGGCACTTC CCAGATGGACGTGCAAAGCCCTGGGAATTTTCTGGCACTTC < 41bp 0.497852619353931 0.809787881454851 0.15889928 0.39791864 prediction 0.619575762909703 Functional Gain - BCL7A ENSG00000110987 UTR3 Human protein_coding chr12:122497867 chr12:122497869 . . 0 23 hm5C_associated_SNPs_101305 0 0 1 0 0 Nucleus 0.500231772619781 0.500231714579264 0 0 hm5C_site_54450 DeepMRMD:0;iRNA_m5C:0 54451 chr17 42225451 42225451 1 + T G rs202187285 42225449 + 42225429 42225469 41 GCCCAGTGCTGACAGCCGTCCATCATGCATAGGAGCAGCTC GCCCAGTGCTGACAGCCGTCCAGCATGCATAGGAGCAGCTC < 41bp 0.500805158494541 0.810587527412333 0.15038121 0.2542926 prediction 0.619564737835584 Functional Gain - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42225449 chr17:42225451 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_101306 0 0 1 0 0 chromatin 0.500231625284336 0.50023164392185 0 3.72750266208755e-08 hm5C_site_54451 DeepMRMD:0;iRNA_m5C:3.72750266208755e-08 54452 chr3 122060404 122060404 1 + C A rs34173813 122060400 + 122060380 122060420 41 ACAAAAACAAGGATGACGAGCTGACGGGCTTTTAGCAGCAT ACAAAAACAAGGATGACGAGCTGAAGGGCTTTTAGCAGCAT < 41bp 0.438779398117097 0.809778133410022 0.0450024 0.13587296 prediction 0.619556266820044 Functional Gain - CSTA ENSG00000121552 CDS Human protein_coding chr3:122060400 chr3:122060404 nonsynonymous SNV 0.084 0 25 hm5C_associated_SNPs_101307 0 0 0 0 0 exosome 0.500231643892544 0.50023164392109 0 5.70916647291142e-11 hm5C_site_54452 DeepMRMD:0;iRNA_m5C:5.70916647291142e-11 54453 chr1 248512878 248512878 1 + C A COAD 248512874 + 248512854 248512894 41 CCACCTGCGATACCTGCAGCCACCCAGGATCTGATCCTTTC CCACCTGCGATACCTGCAGCCACCAAGGATCTGATCCTTTC < 41bp 0.43362346848283 0.809759262152643 0.03869179 0.044219375 prediction 0.619518524305287 Functional Gain - OR14C36 ENSG00000177174 CDS Human protein_coding chr1:248512874 chr1:248512878 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_101308 0 0 0 0 0 unknown 0.500231643921092 0.500231643921116 0 4.68514116391816e-14 hm5C_site_54453 DeepMRMD:0;iRNA_m5C:4.68514116391816e-14 54454 chr14 24642159 24642159 1 + C A LUSC 24642155 + 24642135 24642175 41 ACGAGTGCAACCCCCGCAGCCCGGCCTGCCGCGGCCCCGCT ACGAGTGCAACCCCCGCAGCCCGGACTGCCGCGGCCCCGCT < 41bp 0.420691077096545 0.809728336918449 0.14768073 0.21356311 prediction 0.619456673836899 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24642155 chr14:24642159 synonymous SNV . 0 25 hm5C_associated_SNPs_101309 0 0 0 0 2 chromatin 0.500231652766329 0.50023156837438 0 0 hm5C_site_54454 DeepMRMD:0;iRNA_m5C:0 54455 chr22 20194318 20194318 1 + C A UCEC 20194314 + 20194294 20194334 41 GAAGGGTGGGGTGCAGGGGCCTCCCTGGCTGCAGGGCCCAC GAAGGGTGGGGTGCAGGGGCCTCCATGGCTGCAGGGCCCAC < 41bp 0.562518383225409 0.87222987924438 0.62422085 0.9510387 prediction 0.619422992037942 Functional Gain - LINC00896 ENSG00000236499 ncRNA_exonic Human lincRNA chr22:20194314 chr22:20194318 . . 0 25 hm5C_associated_SNPs_101310 0 0 1 0 0 unknown 0.500231633867491 0.500231643921092 0.6536357 2.01072030137084e-08 hm5C_site_54455 DeepMRMD:0.6536357;iRNA_m5C:2.01072030137084e-08 54456 chr16 67650732 67650732 1 + C A BLCA 67650728 + 67650708 67650748 41 TTCGGCATCGTCGTTACAAACACACCCACGAGAAGCCATTC TTCGGCATCGTCGTTACAAACACAACCACGAGAAGCCATTC < 41bp 0.397678069035049 0.809704191454639 0.048973203 0.056459397 prediction 0.619408382909278 Functional Gain - CTCF ENSG00000102974 CDS Human protein_coding chr16:67650728 chr16:67650732 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_101311 0 0 1 0 2 Nucleus 0.500231643920225 0.500231643921092 0 1.73439040906942e-12 hm5C_site_54456 DeepMRMD:0;iRNA_m5C:1.73439040906942e-12 54457 chr1 12837707 12837707 1 + C A LUAD 12837703 + 12837683 12837723 41 TATGACCTGGAGCCCAGTCACTGTCTGTTGAATGCCTGCTG TATGACCTGGAGCCCAGTCACTGTATGTTGAATGCCTGCTG < 41bp 0.433177640372599 0.809688666133147 0.12949154 0.5251852 prediction 0.619377332266293 Functional Gain - PRAMEF12 ENSG00000116726 CDS Human protein_coding chr1:12837703 chr1:12837707 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_101312 0 0 0 0 0 unknown 0.500222764898435 0.500231643914514 0.0503704 1.77580321585324e-05 hm5C_site_54457 DeepMRMD:0.0503704;iRNA_m5C:1.77580321585324e-05 54458 chr17 73512884 73512884 1 + T G rs8079373 73512882 + 73512862 73512902 41 AGAAGCTGCCCCAGCGCTCGCATGGCCCCAAGGACTTTCTG AGAAGCTGCCCCAGCGCTCGCAGGGCCCCAAGGACTTTCTG < 41bp 0.536289166086667 0.84596534766462 0.51866114 0.9220904 prediction 0.619352363155905 Functional Gain - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73512882 chr17:73512884 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_101313 2 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.80685852 0 hm5C_site_54458 DeepMRMD:0.80685852;iRNA_m5C:0 not specified not specified 54459 chr4 4864494 4864494 1 + T G OV 4864492 + 4864472 4864512 41 AACCGTAAGCCGCGGACGCCCTTCACCACCGCGCAGCTGCT AACCGTAAGCCGCGGACGCCCTGCACCACCGCGCAGCTGCT < 41bp 0.503797631401398 0.813467840447461 0.15876788 0.19604748 prediction 0.619340418092127 Functional Gain - MSX1 ENSG00000163132 CDS Human protein_coding chr4:4864492 chr4:4864494 nonsynonymous SNV 0.918 5 23 hm5C_associated_SNPs_101314 0 0 0 0 1 Cytosol 0.500231643920532 0.500231643733821 0 0 hm5C_site_54459 DeepMRMD:0;iRNA_m5C:0 54460 chr12 57864770 57864770 1 + C A UCEC 57864766 + 57864746 57864786 41 GCCTTATGGAGCGAGGGGTCCAGGCTCTCTGCCTCTTGGGC GCCTTATGGAGCGAGGGGTCCAGGATCTCTGCCTCTTGGGC < 41bp 0.571154209014157 0.880819338752248 0.92372024 0.9354155 prediction 0.619330259476182 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57864766 chr12:57864770 synonymous SNV . 0 25 hm5C_associated_SNPs_101315 0 0 0 0 0 nucleoplasm 0.500231644035488 0.500232216744356 0.02339052 1.14541773621468e-06 hm5C_site_54460 DeepMRMD:0.02339052;iRNA_m5C:1.14541773621468e-06 54461 chr19 39898667 39898667 1 + C A rs3746083 39898663 + 39898643 39898683 41 TGCAACCTCCACCACCCCCTCGCGCTACAAGACTGAGCTAT TGCAACCTCCACCACCCCCTCGCGATACAAGACTGAGCTAT < 41bp 0.584729534348023 0.894387191645489 0.14022434 0.3591831 prediction 0.619315314594932 Functional Gain - ZFP36 ENSG00000128016 CDS Human protein_coding chr19:39898663 chr19:39898667 synonymous SNV . 0 25 hm5C_associated_SNPs_101316 0 0 1 0 0 nucleus 0.500231643906466 0.500231643923329 0 3.37254668636433e-11 hm5C_site_54461 DeepMRMD:0;iRNA_m5C:3.37254668636433e-11 54462 chr1 43352723 43352723 1 + C A rs12739750 43352719 + 43352699 43352739 41 GCAGCGTGAGGAAGATGGTGCTCACGTGGGAGGCCAGCCAA GCAGCGTGAGGAAGATGGTGCTCAAGTGGGAGGCCAGCCAA < 41bp 0.518330268557574 0.827974419575519 0.3960812 0.64313936 prediction 0.61928830203589 Functional Gain - LOC339539 ENSG00000233708 ncRNA_exonic Human processed_pseudogene chr1:43352719 chr1:43352723 . . 0 25 hm5C_associated_SNPs_101317 0 0 0 0 0 unknown 0.500231643918301 0.500231643920838 0.28627872 5.07394126714189e-12 hm5C_site_54462 DeepMRMD:0.28627872;iRNA_m5C:5.07394126714189e-12 54463 chr16 89783937 89783937 1 + C A rs192948350 89783933 + 89783913 89783953 41 TGGGAGCTGCCTCTCTGTGACTCGCCCCTGGACCCACCGCC TGGGAGCTGCCTCTCTGTGACTCGACCCTGGACCCACCGCC < 41bp 0.455332536804897 0.809643446071944 0.058291733 0.16123444 prediction 0.619286892143888 Functional Gain - VPS9D1-AS1 ENSG00000261373 ncRNA_exonic Human antisense chr16:89783933 chr16:89783937 . . 0 25 hm5C_associated_SNPs_101318 0 0 1 0 0 unknown 0.500231643957391 0.500231643959231 0 3.68061137123732e-12 hm5C_site_54463 DeepMRMD:0;iRNA_m5C:3.68061137123732e-12 54464 chr16 57787007 57787007 1 + C A LUSC 57787003 + 57786983 57787023 41 CTGCAGATAGGTGTGGCCTTCTCCCAGAGCAACGTCTCCTC CTGCAGATAGGTGTGGCCTTCTCCAAGAGCAACGTCTCCTC < 41bp 0.599891483169596 0.909534541743135 0.23199618 0.9655903 prediction 0.61928611714708 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57787003 chr16:57787007 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101319 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921115 0.9311806 4.50750547997814e-14 hm5C_site_54464 DeepMRMD:0.9311806;iRNA_m5C:4.50750547997814e-14 54465 chr1 20669015 20669015 1 + C A UCEC 20669011 + 20668991 20669031 41 CCCTCTCTGCTGCCCCAAGGCTGCCAGCCCTTCCTGCCCTG CCCTCTCTGCTGCCCCAAGGCTGCAAGCCCTTCCTGCCCTG < 41bp 0.591022261520677 0.900663490167641 0.11725366 0.20547846 prediction 0.619282457293927 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20669011 chr1:20669015 nonsynonymous SNV 0.947 0 25 hm5C_associated_SNPs_101320 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54465 DeepMRMD:0;iRNA_m5C:0 54466 chr6 29408270 29408270 1 + C A rs2074468 29408266 + 29408246 29408286 41 GTGCTGGTGGGGCTGGGCCACACCCCTTTCATCTTCTCTTT GTGCTGGTGGGGCTGGGCCACACCACTTTCATCTTCTCTTT < 41bp 0.442521836518664 0.809640913735916 0.14763665 0.28291777 prediction 0.619281827471831 Functional Gain - OR10C1 ENSG00000206474 CDS Human protein_coding chr6:29408266 chr6:29408270 nonsynonymous SNV 0.179 0 25 hm5C_associated_SNPs_101321 0 0 0 0 0 unknown 0.50023164392097 0.500231643921099 0 2.57793786317961e-13 hm5C_site_54466 DeepMRMD:0;iRNA_m5C:2.57793786317961e-13 54467 chr18 59931346 59931346 1 + C A OV 59931342 + 59931322 59931362 41 GCTAGAACAAGAGGGTACAACAGGCTGGGAGAGTTTACTGT GCTAGAACAAGAGGGTACAACAGGATGGGAGAGTTTACTGT < 41bp 0.580995128306712 0.890614707309466 0.81427455 0.8615193 prediction 0.619239158005507 Functional Gain - KIAA1468 ENSG00000134444 CDS Human protein_coding chr18:59931342 chr18:59931346 synonymous SNV . 0 25 hm5C_associated_SNPs_101322 0 0 1 0 1 Cytosol 0.50023163353067 0.500231643916794 0.0944894999999999 2.07722481437855e-08 hm5C_site_54467 DeepMRMD:0.0944894999999999;iRNA_m5C:2.07722481437855e-08 54468 chr16 71424225 71424225 1 + C A rs532146219 71424221 + 71424201 71424241 41 GAACTCCTGTGTGTGGAAGGCACCCGCCCTTTCCTTGCCTT GAACTCCTGTGTGTGGAAGGCACCAGCCCTTTCCTTGCCTT < 41bp 0.531498487364597 0.841109228893798 0.07263464 0.22032508 prediction 0.619221483058401 Functional Gain - CALB2 ENSG00000172137 UTR3 Human protein_coding chr16:71424221 chr16:71424225 . . 0 25 hm5C_associated_SNPs_101323 0 0 0 0 0 Ribosome 0.500231644697188 0.500231643921093 0 0 hm5C_site_54468 DeepMRMD:0;iRNA_m5C:0 54469 chr19 13264078 13264078 1 + T G OV 13264075 + 13264055 13264095 41 TATCACTCCCGCATGCAGCGCGGTGGCCTGCGGCTGCACCG TATCACTCCCGCATGCAGCGCGGGGGCCTGCGGCTGCACCG < 41bp 0.569993757046434 0.879583534998294 0.5532195 0.8817422 prediction 0.619179555903719 Functional Gain - IER2 ENSG00000160888 CDS Human protein_coding chr19:13264075 chr19:13264078 synonymous SNV . 0 24 hm5C_associated_SNPs_101324 0 0 1 0 0 Ribosome 0.500229748792857 0.500231606475076 0.6570454 3.71536443810605e-06 hm5C_site_54469 DeepMRMD:0.6570454;iRNA_m5C:3.71536443810605e-06 54470 chr1 18809516 18809516 1 + C A rs76185413 18809512 + 18809492 18809532 41 GTGGCGGTCAACGGCTTTCTCTACCGCTTTGACCTCAACCG GTGGCGGTCAACGGCTTTCTCTACAGCTTTGACCTCAACCG < 41bp 0.581364352969934 0.890954019309457 0.3438062 0.3509525 prediction 0.619179332679047 Functional Gain - KLHDC7A ENSG00000179023 CDS Human protein_coding chr1:18809512 chr1:18809516 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_101325 0 0 0 0 0 Cytosol 0.500231643942426 0.500231624262182 0 0 hm5C_site_54470 DeepMRMD:0;iRNA_m5C:0 54471 chr3 195451690 195451690 1 + C A rs563188154 195451686 + 195451666 195451706 41 CTCTTCTAGGGCCTCAACCCCAGCCGGCCCCATTCCAGAAG CTCTTCTAGGGCCTCAACCCCAGCAGGCCCCATTCCAGAAG < 41bp 0.423573369148441 0.809577358082337 0.4138728 0.40335518 prediction 0.619154716164674 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195451686 chr3:195451690 synonymous SNV . 0 25 hm5C_associated_SNPs_101326 0 0 0 0 0 Nucleus 0.500231643921092 0.500231648487428 0 9.13267128588302e-09 hm5C_site_54471 DeepMRMD:0;iRNA_m5C:9.13267128588302e-09 54472 chr5 63871662 63871662 1 + T A READ 63871658 + 63871638 63871678 41 CTTTACATCCAGCTGCAGTGCTGCTTAGAAATGTATACCAC CTTTACATCCAGCTGCAGTGCTGCATAGAAATGTATACCAC < 41bp 0.522768778723663 0.832338787221991 0.07578316 0.108213484 prediction 0.619140016996657 Functional Gain - RGS7BP ENSG00000186479 CDS Human protein_coding chr5:63871658 chr5:63871662 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_101327 0 0 0 0 2 exosome 0.50023165434288 0.500231601491431 0 0 hm5C_site_54472 DeepMRMD:0;iRNA_m5C:0 54473 chr11 70017068 70017068 1 + T G STAD 70017066 + 70017046 70017086 41 CTGTTTGCGCTGCTGAACAACATCATCGAGATCCGCCTGGA CTGTTTGCGCTGCTGAACAACAGCATCGAGATCCGCCTGGA < 41bp 0.511267514045583 0.820825966706628 0.02063343 0.110695004 prediction 0.619116905322089 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70017066 chr11:70017068 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_101328 0 0 0 0 2 Cytosol 0.500231643922991 0.500231652038781 0 1.62315811902403e-08 hm5C_site_54473 DeepMRMD:0;iRNA_m5C:1.62315811902403e-08 54474 chr4 152201036 152201036 1 + T G CESC 152201033 + 152201013 152201053 41 CCTTGGCAGGTCAGCCTACACTTTGACCACAACTTTATCTG CCTTGGCAGGTCAGCCTACACTTGGACCACAACTTTATCTG < 41bp 0.434140142497476 0.809528141615986 0.19991583 0.19587561 prediction 0.619056283231972 Functional Gain - PRSS48 ENSG00000189099 CDS Human protein_coding chr4:152201033 chr4:152201036 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_101329 0 0 0 0 1 nucleus 0.500231643921121 0.500231643921092 0 0 hm5C_site_54474 DeepMRMD:0;iRNA_m5C:0 54475 chr1 248308623 248308623 1 + C A SKCM 248308619 + 248308599 248308639 41 CCTGGACACCCAGCTCCACACCCCCATGTACTTCCTCCTCA CCTGGACACCCAGCTCCACACCCCAATGTACTTCCTCCTCA < 41bp 0.430242945829677 0.809517975082727 0.0036810338 0.006535113 prediction 0.619035950165453 Functional Gain - OR2M5 ENSG00000162727 CDS Human protein_coding chr1:248308619 chr1:248308623 synonymous SNV . 0 25 hm5C_associated_SNPs_101330 0 0 0 0 0 unknown 0.500231649178345 0.500231643921094 0 0 hm5C_site_54475 DeepMRMD:0;iRNA_m5C:0 54476 chr1 248343419 248343419 1 + C A LUAD 248343415 + 248343395 248343435 41 AGTGGCCTTCATGGGAAACTCTGTCATGGTTCTCCTCATCT AGTGGCCTTCATGGGAAACTCTGTAATGGTTCTCCTCATCT < 41bp 0.563165221245422 0.872663298930292 0.098852634 0.24600756 prediction 0.618996155369741 Functional Gain - OR2M2 ENSG00000198601 CDS Human protein_coding chr1:248343415 chr1:248343419 synonymous SNV . 0 25 hm5C_associated_SNPs_101331 0 0 0 0 0 exosome 0.500231643921211 0.500231643921092 0 0 hm5C_site_54476 DeepMRMD:0;iRNA_m5C:0 54477 chr3 52514358 52514358 1 + C A SARC 52514354 + 52514334 52514374 41 TCTAGTGGAGCCACACAGCCCTGCCTGGGCCCCCTGGCTGG TCTAGTGGAGCCACACAGCCCTGCATGGGCCCCCTGGCTGG < 41bp 0.421546332447946 0.809491314983532 0.022253573 0.111976326 prediction 0.618982629967065 Functional Gain - NISCH ENSG00000010322 CDS Human protein_coding chr3:52514354 chr3:52514358 synonymous SNV . 0 25 hm5C_associated_SNPs_101332 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921268 0 3.51940698806175e-13 hm5C_site_54477 DeepMRMD:0;iRNA_m5C:3.51940698806175e-13 54478 chr4 41984232 41984232 1 + C A LUAD 41984228 + 41984208 41984248 41 CTCGCTGAACCAGTTGGACTCTCACGTTCTGCTGTGCTTCG CTCGCTGAACCAGTTGGACTCTCAAGTTCTGCTGTGCTTCG < 41bp 0.572782900235056 0.882268799942853 0.35136998 0.7606421 prediction 0.618971799415595 Functional Gain - DCAF4L1 ENSG00000182308 CDS Human protein_coding chr4:41984228 chr4:41984232 nonsynonymous SNV 0.151 4 25 hm5C_associated_SNPs_101333 0 0 1 0 0 Nucleus 0.496019574920593 0.500207039073485 0.5212842 0.000414078146970587 hm5C_site_54478 DeepMRMD:0.5212842;iRNA_m5C:0.000414078146970587 54479 chr9 32551209 32551209 1 + T G rs183953517 32551206 + 32551186 32551226 41 TCTTGTTACTGGTACTCAGCCACTGGGGACACTGACTGAAT TCTTGTTACTGGTACTCAGCCACGGGGGACACTGACTGAAT < 41bp 0.452611186540611 0.80948163980219 0.2585461 0.38650176 prediction 0.61896327960438 Functional Gain - SMIM27 ENSG00000235453 ncRNA_exonic Human protein_coding chr9:32551206 chr9:32551209 . . 0 24 hm5C_associated_SNPs_101334 0 0 0 4 0 unknown 0.500231643921195 0.500231644035312 0 2.28233432153502e-10 hm5C_site_54479 DeepMRMD:0;iRNA_m5C:2.28233432153502e-10 54480 chr1 223567223 223567223 1 + C A rs200002694 223567219 + 223567199 223567239 41 CCACCCCAGCGGCCGCAGCCCTGCCCGCATTACCCTCTGGC CCACCCCAGCGGCCGCAGCCCTGCACGCATTACCCTCTGGC < 41bp 0.547962309523526 0.857433900242177 0.32422328 0.51254714 prediction 0.618943181437302 Functional Gain - CCDC185 ENSG00000178395 CDS Human protein_coding chr1:223567219 chr1:223567223 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_101335 0 0 0 0 0 unknown 0.500231643922906 0.500231643921093 0.02509428 0 hm5C_site_54480 DeepMRMD:0.02509428;iRNA_m5C:0 54481 chr12 20766431 20766431 1 + C A COAD 20766427 + 20766407 20766447 41 GCCGTCATGGGCGAGGCCCACGGCCTCATTACCGACCTCCT GCCGTCATGGGCGAGGCCCACGGCATCATTACCGACCTCCT < 41bp 0.414574225955372 0.809469617662369 0.41969168 0.48040602 prediction 0.618939235324739 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20766427 chr12:20766431 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_101336 0 0 0 0 1 Nucleus 0.500231643767012 0.500231643921158 0 3.08291392414617e-10 hm5C_site_54481 DeepMRMD:0;iRNA_m5C:3.08291392414617e-10 54482 chr11 69466017 69466017 1 + C A UCEC 69466013 + 69465993 69466033 41 GGAGGAGGAGGTGGACCTGGCTTGCACACCCACCGACGTGC GGAGGAGGAGGTGGACCTGGCTTGAACACCCACCGACGTGC < 41bp 0.569953466917986 0.879422897431102 0.35114768 0.28293675 prediction 0.618938861026233 Functional Gain - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69466013 chr11:69466017 stopgain 0.997 1 25 hm5C_associated_SNPs_101337 0 0 1 0 0 Ribosome 0.500231643920995 0.500231643921092 0 1.93844940099552e-13 hm5C_site_54482 DeepMRMD:0;iRNA_m5C:1.93844940099552e-13 54483 chr12 8995918 8995918 1 + C A COAD 8995914 + 8995894 8995934 41 GGTGGATTATTACATCGACCCGGCCGATGCAAGCCCTGACC GGTGGATTATTACATCGACCCGGCAGATGCAAGCCCTGACC < 41bp 0.416535764498621 0.809429471280641 0.847986 0.8606864 prediction 0.618858942561282 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:8995914 chr12:8995918 synonymous SNV . 0 25 hm5C_associated_SNPs_101338 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.0254007999999999 0 hm5C_site_54483 DeepMRMD:0.0254007999999999;iRNA_m5C:0 54484 chrX 150909321 150909321 1 + C A LUSC 150909317 + 150909297 150909337 41 GCTGGGGATTGGTACTACTGCTGGCTATTTGTCATTGCCAT GCTGGGGATTGGTACTACTGCTGGATATTTGTCATTGCCAT < 41bp 0.588620534804676 0.898037296691902 0.07900575 0.1719248 prediction 0.618833523774453 Functional Gain - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150909317 chrX:150909321 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_101339 0 0 0 0 2 unknown 0.500231643647472 0.500231440182047 0 0 hm5C_site_54484 DeepMRMD:0;iRNA_m5C:0 54485 chr1 236712989 236712989 1 + A C rs56115130 236712992 - 236712972 236713012 41 GTCTTTATGGAGAAAAATAACTCTGGGGGATTCTCGAGTCT GTCTTTATGGAGAAAAATAACTCGGGGGGATTCTCGAGTCT < 41bp 0.508957020519365 0.818355201949487 0.14563528 0.4731128 prediction 0.618796362860244 Functional Gain - HEATR1;LGALS8 ENSG00000230325 ncRNA_intronic Human antisense chr1:236712992 chr1:236712989 . . 0 24 hm5C_associated_SNPs_101340 0 0 1 0 0 unknown 0.500231643921249 0.500231643922302 0 2.10520489929422e-12 hm5C_site_54485 DeepMRMD:0;iRNA_m5C:2.10520489929422e-12 54486 chr19 57642355 57642355 1 + C A PRAD 57642351 + 57642331 57642371 41 ATACAGAAGAGACCCTCAATCAGTCTACAGAATTAAGACTT ATACAGAAGAGACCCTCAATCAGTATACAGAATTAAGACTT < 41bp 0.448944037386831 0.809376900243205 0.1627515 0.16599587 prediction 0.61875380048641 Functional Gain - USP29 ENSG00000131864 CDS Human protein_coding chr19:57642351 chr19:57642355 nonsynonymous SNV 0.008 1 25 hm5C_associated_SNPs_101341 0 0 0 0 0 unknown 0.500231644066065 0.500231643921083 0 0 hm5C_site_54486 DeepMRMD:0;iRNA_m5C:0 54487 chr1 166962004 166962004 1 + C A ACC 166962000 + 166961980 166962020 41 CTCATTGTGAACAGCGCTTCCTCCCTTGTGAAATTGGCTGT CTCATTGTGAACAGCGCTTCCTCCATTGTGAAATTGGCTGT < 41bp 0.393283373093099 0.809357058734982 0.059742987 0.95384717 prediction 0.618714117469964 Functional Gain - MAEL ENSG00000143194 CDS Human protein_coding chr1:166962000 chr1:166962004 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101342 0 0 0 1 2 exosome 0.500231643921093 0.500231643874745 0.90769434 0 hm5C_site_54487 DeepMRMD:0.90769434;iRNA_m5C:0 54488 chr4 88583774 88583774 1 + C A rs141979823 88583770 + 88583750 88583790 41 TCAGAGGAAGATGACAGAAGCGAGCTTGATGACAACAACAC TCAGAGGAAGATGACAGAAGCGAGATTGATGACAACAACAC < 41bp 0.560426464866547 0.869774605149173 0.37687272 0.8396449 prediction 0.618696280565253 Functional Gain - DMP1 ENSG00000152592 CDS Human protein_coding chr4:88583770 chr4:88583774 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_101343 1 0 0 0 0 exosome 0.500231730728978 0.500232197099515 0.6792898 9.32741073267351e-07 hm5C_site_54488 DeepMRMD:0.6792898;iRNA_m5C:9.32741073267351e-07 Hypophosphatemic Rickets, Recessive Hypophosphatemic Rickets, Recessive 54489 chr14 24538442 24538442 1 + C A UCEC 24538438 + 24538418 24538458 41 AGCTGGAACCTGATAGAAGACGGCCTCCTGACCCCACAGGT AGCTGGAACCTGATAGAAGACGGCATCCTGACCCCACAGGT < 41bp 0.418561008057135 0.809346303228723 0.35671747 0.42265725 prediction 0.618692606457446 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24538438 chr14:24538442 nonsynonymous SNV 0.514 4 25 hm5C_associated_SNPs_101344 0 0 0 0 2 Endoplasmic reticulum 0.500231643921094 0.500231643921092 0 0 hm5C_site_54489 DeepMRMD:0;iRNA_m5C:0 54490 chr19 18497248 18497248 1 + C A COAD 18497244 + 18497224 18497264 41 TTCGAACACCGACCTCGTCCCGGCCCCTGCAGTCCGGATAC TTCGAACACCGACCTCGTCCCGGCACCTGCAGTCCGGATAC < 41bp 0.434016265443185 0.809343039571342 0.2957179 0.5413237 prediction 0.618686079142684 Functional Gain - GDF15 ENSG00000130513 CDS Human protein_coding chr19:18497244 chr19:18497248 synonymous SNV . 0 25 hm5C_associated_SNPs_101345 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643915277 0.0826473999999999 0 hm5C_site_54490 DeepMRMD:0.0826473999999999;iRNA_m5C:0 54491 chr14 81609541 81609541 1 + C A LUAD 81609537 + 81609517 81609557 41 ACCCCCAGGAAGAGACTCTACAAGCTTTTGACAGCCATTAT ACCCCCAGGAAGAGACTCTACAAGATTTTGACAGCCATTAT < 41bp 0.439140434612487 0.809313898002571 0.023389548 0.02769211 prediction 0.618627796005143 Functional Gain - TSHR ENSG00000165409 CDS Human protein_coding chr14:81609537 chr14:81609541 nonsynonymous SNV 0.952 1 25 hm5C_associated_SNPs_101346 0 0 0 0 0 cytosol 0.500231643313166 0.500231629010104 0 0 hm5C_site_54491 DeepMRMD:0;iRNA_m5C:0 54492 chr7 157209551 157209551 1 + C A rs1059752 157209547 + 157209527 157209567 41 AAAACGGGCCGGTATTTACACACGCGCAAAACACCCAGAGA AAAACGGGCCGGTATTTACACACGAGCAAAACACCCAGAGA < 41bp 0.445192352270142 0.809294786913347 0.30844915 0.19711846 prediction 0.618589573826693 Functional Gain - DNAJB6 ENSG00000105993 UTR3 Human protein_coding chr7:157209547 chr7:157209551 . . 0 25 hm5C_associated_SNPs_101347 0 0 1 2 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54492 DeepMRMD:0;iRNA_m5C:0 54493 chr9 138413985 138413985 1 + C A UCEC 138413981 + 138413961 138414001 41 GGTGACACCCATGACCCTCACGACCCTGGAAGGGGGCAACC GGTGACACCCATGACCCTCACGACACTGGAAGGGGGCAACC < 41bp 0.408553682393806 0.809291563378067 0.38147217 0.33868027 prediction 0.618583126756134 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138413981 chr9:138413985 synonymous SNV . 0 25 hm5C_associated_SNPs_101348 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_54493 DeepMRMD:0;iRNA_m5C:0 54494 chr21 45820227 45820227 1 + T G HNSC 45820224 + 45820204 45820244 41 CCTGTGCATGCTGGCCTTCCCGCTGCTCCTCACCGGCCTCA CCTGTGCATGCTGGCCTTCCCGCGGCTCCTCACCGGCCTCA < 41bp 0.57219305019464 0.881468141606056 0.19117966 0.88645124 prediction 0.618550182822832 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45820224 chr21:45820227 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_101349 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643921091 0.77290248 0 hm5C_site_54494 DeepMRMD:0.77290248;iRNA_m5C:0 54495 chr6 31675350 31675350 1 + C A OV 31675346 + 31675326 31675366 41 ATGGTTCTGCAGCCCTGCAGCAGGCTCCTTCACCACCCTGG ATGGTTCTGCAGCCCTGCAGCAGGATCCTTCACCACCCTGG < 41bp 0.549379104872816 0.858651415156638 0.91275203 0.92810947 prediction 0.618544620567643 Functional Gain - LY6G6F ENSG00000204424;ENSG00000250641 CDS Human other chr6:31675346 chr6:31675350 synonymous SNV . 0 25 hm5C_associated_SNPs_101350 0 0 0 0 0 Endoplasmic reticulum 0.500231643925133 0.500231643921093 0.0307148799999999 0 hm5C_site_54495 DeepMRMD:0.0307148799999999;iRNA_m5C:0 54496 chr8 87165877 87165877 1 + T G rs78164817 87165874 + 87165854 87165894 41 TTGGGATTACATGCATGAGCCACTGTGCTGGGCTTCATTTA TTGGGATTACATGCATGAGCCACGGTGCTGGGCTTCATTTA < 41bp 0.492165897932971 0.8092512614811 0.091786474 0.24161708 prediction 0.6185025229622 Functional Gain - ATP6V0D2 ENSG00000253675 ncRNA_intronic Human antisense chr8:87165874 chr8:87165877 . . 0 24 hm5C_associated_SNPs_101351 0 0 0 1 0 Cytosol 0.500231642502077 0.500231643921092 0 2.83803158751539e-09 hm5C_site_54496 DeepMRMD:0;iRNA_m5C:2.83803158751539e-09 54497 chr17 73636303 73636303 1 + C A rs116652979 73636299 + 73636279 73636319 41 GGCATGGCTGCCACCGACTTCGTGCAGGAGATGCGCGCCGT GGCATGGCTGCCACCGACTTCGTGAAGGAGATGCGCGCCGT < 41bp 0.564444533596535 0.873693293874223 0.09845266 0.31492078 prediction 0.618497520555375 Functional Gain - SMIM5 ENSG00000204323 CDS Human protein_coding chr17:73636299 chr17:73636303 nonsynonymous SNV 0.515 0 25 hm5C_associated_SNPs_101352 0 0 0 0 1 chromatin 0.502018838242384 0.500236017925715 0 0 hm5C_site_54497 DeepMRMD:0;iRNA_m5C:0 54498 chr14 20389333 20389333 1 + C A OV 20389329 + 20389309 20389349 41 CCTCGAGTCACCAAACTTGCCTGCCTGGACTCTTACATCAT CCTCGAGTCACCAAACTTGCCTGCATGGACTCTTACATCAT < 41bp 0.426082116813018 0.809247310559327 0.016542941 0.1786882 prediction 0.618494621118655 Functional Gain - OR4K5 ENSG00000176281 CDS Human protein_coding chr14:20389329 chr14:20389333 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_101353 0 0 0 0 0 unknown 0.500231643903204 0.500231651591107 0 1.53758061838261e-08 hm5C_site_54498 DeepMRMD:0;iRNA_m5C:1.53758061838261e-08 54499 chr12 56031518 56031518 1 + C A OV 56031514 + 56031494 56031534 41 CGTCCTCAGTCTCTTCTACACAGTCATCACACCCATGCTCA CGTCCTCAGTCTCTTCTACACAGTAATCACACCCATGCTCA < 41bp 0.451327290208027 0.809235828761752 0.029558241 0.35490143 prediction 0.618471657523505 Functional Gain - OR10P1 ENSG00000175398 CDS Human protein_coding chr12:56031514 chr12:56031518 synonymous SNV . 0 25 hm5C_associated_SNPs_101354 0 0 0 0 0 exosome 0.500229847500565 0.500231644079104 0 3.59315707765262e-06 hm5C_site_54499 DeepMRMD:0;iRNA_m5C:3.59315707765262e-06 54500 chrX 140994110 140994110 1 + T G THCA 140994107 + 140994087 140994127 41 CCAGTCTCCTCTCCAGATTCCTGTGAGCTCCTCCTCCTCCT CCAGTCTCCTCTCCAGATTCCTGGGAGCTCCTCCTCCTCCT < 41bp 0.417794544867097 0.80921719152579 0.17649299 0.93601286 prediction 0.61843438305158 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140994107 chrX:140994110 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_101355 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.87202572 0 hm5C_site_54500 DeepMRMD:0.87202572;iRNA_m5C:0 54501 chr1 155148088 155148088 1 + C A COAD 155148084 + 155148064 155148104 41 CCCGCCTCTCCCGCAGAACTCTCCCCAAGCCAGACCGCCTG CCCGCCTCTCCCGCAGAACTCTCCACAAGCCAGACCGCCTG < 41bp 0.581037006640963 0.890246342477571 0.13804609 0.9441215 prediction 0.618418671673216 Functional Gain - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155148084 chr1:155148088 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101356 0 0 0 0 1 nucleolus 0.50023164470353 0.500231643921148 0.888243 0 hm5C_site_54501 DeepMRMD:0.888243;iRNA_m5C:0 54502 chr1 55148459 55148459 1 + C A rs368360289 55148455 + 55148435 55148475 41 AAGGAGGGCCGGGCTTCCATCGTGCCCCTGGCGGTGAGCAC AAGGAGGGCCGGGCTTCCATCGTGACCCTGGCGGTGAGCAC < 41bp 0.449768402300148 0.809206075123601 0.41623804 0.34943157 prediction 0.618412150247202 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55148455 chr1:55148459 nonsynonymous SNV 0.121 3 25 hm5C_associated_SNPs_101357 0 0 0 0 1 exosome 0.500231643119079 0.500231587926642 0 0 hm5C_site_54502 DeepMRMD:0;iRNA_m5C:0 54503 chr16 778914 778914 1 + C A LUSC 778910 + 778890 778930 41 GCTAAGGCACGGCCCCTTTCCCGCCGCGGCAAGAGGGTGGG GCTAAGGCACGGCCCCTTTCCCGCAGCGGCAAGAGGGTGGG < 41bp 0.439272053890008 0.809165472328034 0.6505178 0.5281786 prediction 0.618330944656067 Functional Gain - HAGHL ENSG00000103253 CDS Human protein_coding chr16:778910 chr16:778914 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_101358 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54503 DeepMRMD:0;iRNA_m5C:0 54504 chrX 100079227 100079227 1 + C A rs150166686 100079223 + 100079203 100079243 41 CAATGAACCAGCAGAATCCTCAGGCCCCTCAGGCCCAGTCT CAATGAACCAGCAGAATCCTCAGGACCCTCAGGCCCAGTCT < 41bp 0.584583928405859 0.893717707597179 0.915642 0.9202935 prediction 0.618267558382641 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100079223 chrX:100079227 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_101359 0 0 1 0 1 Nucleus 0.500231643930546 0.500231675562957 0.00930300000000006 6.32648209375475e-08 hm5C_site_54504 DeepMRMD:0.00930300000000006;iRNA_m5C:6.32648209375475e-08 54505 chr11 125365418 125365418 1 + C A rs11220100 125365414 + 125365394 125365434 41 GTAGTAAAACAATCGCTCTCCCGGCGTCTGCGGCCGCTGCC GTAGTAAAACAATCGCTCTCCCGGAGTCTGCGGCCGCTGCC < 41bp 0.544556488701227 0.853669866791684 0.90238297 0.90861124 prediction 0.618226756180914 Functional Gain - LOC403312 ENSG00000255537 CDS Human antisense chr11:125365414 chr11:125365418 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101360 0 0 0 0 1 unknown 0.500231643935932 0.500231555085399 0.0124565400000001 0 hm5C_site_54505 DeepMRMD:0.0124565400000001;iRNA_m5C:0 54506 chr5 121187902 121187902 1 + C A UCEC 121187898 + 121187878 121187918 41 CCCGACTCCGAGGCTGCCATCAACCGCCAGATCAACCTCGA CCCGACTCCGAGGCTGCCATCAACAGCCAGATCAACCTCGA < 41bp 0.574484054428956 0.883591522350214 0.10805416 0.25036016 prediction 0.618214935842517 Functional Gain - FTMT ENSG00000181867 CDS Human protein_coding chr5:121187898 chr5:121187902 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_101361 0 0 0 0 0 unknown 0.500231643101381 0.500231570305842 0 0 hm5C_site_54506 DeepMRMD:0;iRNA_m5C:0 54507 chr16 722946 722946 1 + C A STAD 722942 + 722922 722962 41 CCACAGCACCATTACATGGACGGGCAGACCCCCTGCCTCTT CCACAGCACCATTACATGGACGGGAAGACCCCCTGCCTCTT < 41bp 0.575677013165729 0.884758541272142 0.84480387 0.82324106 prediction 0.618163056212826 Functional Gain - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:722942 chr16:722946 nonsynonymous SNV 0.984 0 25 hm5C_associated_SNPs_101362 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54507 DeepMRMD:0;iRNA_m5C:0 54508 chr1 152671609 152671609 1 + C A LUAD 152671605 + 152671585 152671625 41 AGCCACCACAGGCCCCGTCTCTTCCACCGGCACCGGCACCA AGCCACCACAGGCCCCGTCTCTTCAACCGGCACCGGCACCA < 41bp 0.418638759644114 0.809070721761219 0.10436246 0.36074734 prediction 0.618141443522438 Functional Gain - LCE2A ENSG00000187173 CDS Human protein_coding chr1:152671605 chr1:152671609 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_101363 0 0 0 0 0 unknown 0.500231643924353 0.500230734140198 0 0 hm5C_site_54508 DeepMRMD:0;iRNA_m5C:0 54509 chr22 31658167 31658167 1 + C A UCEC 31658163 + 31658143 31658183 41 CCAACAATCGAAACGCCATCCACCCTGGGGACCGCATCCTG CCAACAATCGAAACGCCATCCACCATGGGGACCGCATCCTG < 41bp 0.386122701698355 0.809054613503836 0.022981882 0.06170392 prediction 0.618109227007672 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658163 chr22:31658167 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_101364 0 0 0 0 1 Cytosol 0.500231643921095 0.500231643477315 0 0 hm5C_site_54509 DeepMRMD:0;iRNA_m5C:0 54510 chr5 140537227 140537227 1 + C A PAAD 140537223 + 140537203 140537243 41 AGCAGCGAGGCGCTGGTGCGCGTGCTGGTGTGCTGGACGCC AGCAGCGAGGCGCTGGTGCGCGTGATGGTGTGCTGGACGCC < 41bp 0.55558703983169 0.864602727212618 0.1999526 0.22011465 prediction 0.618031374761854 Functional Gain - PCDHB17P ENSG00000255622 CDS Human transcribed_unprocessed_pseudogene chr5:140537223 chr5:140537227 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101365 0 0 0 0 0 unknown 0.50023165097307 0.500231642988888 0 0 hm5C_site_54510 DeepMRMD:0;iRNA_m5C:0 54511 chr5 169535405 169535405 1 + T G SKCM 169535402 + 169535382 169535422 41 CCAGGACTGAGCCCTGAGCCCAGTGACAAGACGGGGCAGAA CCAGGACTGAGCCCTGAGCCCAGGGACAAGACGGGGCAGAA < 41bp 0.573896785459019 0.882909604177676 0.21624735 0.8985394 prediction 0.618025637437315 Functional Gain - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169535402 chr5:169535405 nonsynonymous SNV 0.182 1 24 hm5C_associated_SNPs_101366 0 0 0 0 1 exosome 0.500231643906502 0.500231643921092 0.7970788 2.91804358454328e-11 hm5C_site_54511 DeepMRMD:0.7970788;iRNA_m5C:2.91804358454328e-11 54512 chr6 33245209 33245209 1 + C A BRCA 33245205 + 33245185 33245225 41 GTACGCCGCACCATGCAGCTCAGGCTCTTCCGGCGCCTCCT GTACGCCGCACCATGCAGCTCAGGATCTTCCGGCGCCTCCT < 41bp 0.54558283452372 0.854591263481564 0.8309144 0.91400874 prediction 0.618016857915688 Functional Gain - B3GALT4 ENSG00000235863 CDS Human protein_coding chr6:33245205 chr6:33245209 nonsynonymous SNV 0.958 0 25 hm5C_associated_SNPs_101367 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921053 0.16618868 0 hm5C_site_54512 DeepMRMD:0.16618868;iRNA_m5C:0 54513 chr7 142568345 142568345 1 + C A LUAD 142568341 + 142568321 142568361 41 TTCCTTGTCTGGACTCACCCCAGGCCTGGCTTTCAGCCATT TTCCTTGTCTGGACTCACCCCAGGACTGGCTTTCAGCCATT < 41bp 0.421354786400178 0.809000942537636 0.8026347 0.86230445 prediction 0.618001885075272 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142568341 chr7:142568345 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_101368 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.1193395 0 hm5C_site_54513 DeepMRMD:0.1193395;iRNA_m5C:0 54514 chr2 223554115 223554115 1 + C A UCEC 223554111 + 223554091 223554131 41 TGACTTCAAGGACCTGTTTCCTGGCTTTACTTCATATCTTC TGACTTCAAGGACCTGTTTCCTGGATTTACTTCATATCTTC < 41bp 0.579627862754366 0.888625144462289 0.26310098 0.28651747 prediction 0.617994563415845 Functional Gain - MOGAT1 ENSG00000124003 CDS Human protein_coding chr2:223554111 chr2:223554115 synonymous SNV . 0 25 hm5C_associated_SNPs_101369 0 0 0 0 1 cytosol 0.500231647547166 0.500231643921092 0 0 hm5C_site_54514 DeepMRMD:0;iRNA_m5C:0 54515 chr1 158435410 158435410 1 + T G LUAD 158435407 + 158435387 158435427 41 CGTCGTCCTCGGCTTCTCATCCCTGGCCAGGCTGCAGCAGC CGTCGTCCTCGGCTTCTCATCCCGGGCCAGGCTGCAGCAGC < 41bp 0.444652892466756 0.808965836683739 0.13161021 0.7648704 prediction 0.617931673367478 Functional Gain - OR10K1 ENSG00000173285 CDS Human protein_coding chr1:158435407 chr1:158435410 nonsynonymous SNV 0.825 2 24 hm5C_associated_SNPs_101370 0 0 0 0 0 unknown 0.500231643920754 0.500231582140649 0.5297408 0 hm5C_site_54515 DeepMRMD:0.5297408;iRNA_m5C:0 54516 chr17 61768554 61768554 1 + T G STAD 61768551 + 61768531 61768571 41 TATGGCTGTCTGCGGGACCGCGCTGAGAAGACCCTGACCAT TATGGCTGTCTGCGGGACCGCGCGGAGAAGACCCTGACCAT < 41bp 0.438361140118846 0.808964629407398 0.1056349 0.8392304 prediction 0.617929258814797 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61768551 chr17:61768554 synonymous SNV . 0 24 hm5C_associated_SNPs_101371 0 0 1 0 2 Cytosol 0.500231643921422 0.500231643921059 0.6784608 0 hm5C_site_54516 DeepMRMD:0.6784608;iRNA_m5C:0 54517 chr16 771422 771422 1 + C A rs149844405 771418 + 771398 771438 41 CTCCAGCCCGGCTTCCGGCGCGTGCCGCTGCGGCTGCAGGT CTCCAGCCCGGCTTCCGGCGCGTGACGCTGCGGCTGCAGGT < 41bp 0.520880207214613 0.829780632890884 0.43636146 0.6294311 prediction 0.617800851352542 Functional Gain - FAM173A ENSG00000103254 CDS Human protein_coding chr16:771418 chr16:771422 nonsynonymous SNV 0.565 3 25 hm5C_associated_SNPs_101372 0 0 1 0 1 Ribosome 0.500231643924999 0.500231643918514 0.2588622 0 hm5C_site_54517 DeepMRMD:0.2588622;iRNA_m5C:0 54518 chr16 84872175 84872175 1 + T A UCEC 84872171 + 84872151 84872191 41 TCTGCGGATCCCAAGGCTACCTCCTGCCCAACGTCACTCTC TCTGCGGATCCCAAGGCTACCTCCAGCCCAACGTCACTCTC < 41bp 0.514166875058751 0.823053401926935 0.14069715 0.90291 prediction 0.617773053736368 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84872171 chr16:84872175 nonsynonymous SNV 0.012 3 25 hm5C_associated_SNPs_101373 0 0 0 0 0 Nucleus 0.500231643921089 0.50023164392109 0.80582 1.55431223447522e-15 hm5C_site_54518 DeepMRMD:0.80582;iRNA_m5C:1.55431223447522e-15 54519 chr13 111995169 111995169 1 + C A rs45474991 111995165 + 111995145 111995185 41 TGTCGCGCTGCCACAGAAGTCCAGCGAAAAGGCGGAGTTGG TGTCGCGCTGCCACAGAAGTCCAGAGAAAAGGCGGAGTTGG < 41bp 0.438857656481425 0.808883407869026 0.52370775 0.7203679 prediction 0.617766815738053 Functional Gain - TEX29 ENSG00000153495 CDS Human protein_coding chr13:111995165 chr13:111995169 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_101374 0 0 0 0 0 exosome 0.500231643921103 0.500231643921093 0.3933203 0 hm5C_site_54519 DeepMRMD:0.3933203;iRNA_m5C:0 54520 chr15 45567873 45567873 1 + C A rs183740563 45567869 + 45567849 45567889 41 TTGGGCCGGGCTCAGTGGCTCATGCCTGTAATCCCAGCACT TTGGGCCGGGCTCAGTGGCTCATGACTGTAATCCCAGCACT < 41bp 0.486833513627867 0.808857894753831 0.05205795 0.19683942 prediction 0.617715789507663 Functional Gain - LOC101928414 ENSG00000259520 ncRNA_intronic Human antisense chr15:45567869 chr15:45567873 . . 0 25 hm5C_associated_SNPs_101375 0 0 0 7 0 unknown 0.500231643920251 0.500231643920831 0 1.16040510533821e-12 hm5C_site_54520 DeepMRMD:0;iRNA_m5C:1.16040510533821e-12 54521 chr3 69134122 69134122 1 + T G rs146642345 69134119 + 69134099 69134139 41 CGAGACGGAGCCGCTGTCAACTCTCCAACTCAGCTCAGCTG CGAGACGGAGCCGCTGTCAACTCGCCAACTCAGCTCAGCTG < 41bp 0.520304938718485 0.829159862960093 0.9491688 0.20024848 prediction 0.617709848483216 Functional Gain - ARL6IP5 ENSG00000144746 UTR5 Human protein_coding chr3:69134119 chr3:69134122 . . 0 24 hm5C_associated_SNPs_101376 0 0 0 0 0 Endoplasmic reticulum 0.500231643921096 0.500231643933241 0 2.42905695557738e-11 hm5C_site_54521 DeepMRMD:0;iRNA_m5C:2.42905695557738e-11 54522 chr12 55794653 55794653 1 + C A UCEC 55794649 + 55794629 55794669 41 GATCAACAGAATTTTTTCTTCTGGCTGTCATGTCTTATGAT GATCAACAGAATTTTTTCTTCTGGATGTCATGTCTTATGAT < 41bp 0.551517324514929 0.860368883622957 0.38582534 0.45415828 prediction 0.617703118216058 Functional Gain - OR6C65 ENSG00000205328 CDS Human protein_coding chr12:55794649 chr12:55794653 nonsynonymous SNV 0.003 3 25 hm5C_associated_SNPs_101377 0 0 0 0 0 unknown 0.500231491568286 0.500229320002815 0 0 hm5C_site_54522 DeepMRMD:0;iRNA_m5C:0 54523 chr7 73456962 73456962 1 + C A PRAD 73456958 + 73456938 73456978 41 CCGCAGGGCTCGGCGCCTTCCCCGCAGTTACCTTTCCGGGG CCGCAGGGCTCGGCGCCTTCCCCGAAGTTACCTTTCCGGGG < 41bp 0.545754469991937 0.854559638207001 0.12733358 0.1471591 prediction 0.617610336430128 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73456958 chr7:73456962 nonsynonymous SNV 0.143 1 25 hm5C_associated_SNPs_101378 0 0 0 0 3 exosome 0.500231644291079 0.500231754716222 0 2.20850287391272e-07 hm5C_site_54523 DeepMRMD:0;iRNA_m5C:2.20850287391272e-07 54524 chr12 4874620 4874620 1 + C A LUAD 4874616 + 4874596 4874636 41 GAGGCCAGTGCTAGTGATCGCTGCCTGACAGACCCTGGCAA GAGGCCAGTGCTAGTGATCGCTGCATGACAGACCCTGGCAA < 41bp 0.590272959623073 0.899067192480038 0.37433237 0.43775123 prediction 0.61758846571393 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4874616 chr12:4874620 nonsynonymous SNV 0.122 4 25 hm5C_associated_SNPs_101379 0 0 0 0 2 cytosol 0.500231644628927 0.500231643921091 0 0 hm5C_site_54524 DeepMRMD:0;iRNA_m5C:0 54525 chr10 35897134 35897134 1 + C A rs199590260 35897130 + 35897110 35897150 41 GATGCGCAGGAGGCCGGGACCCCCCACAAGCCCCTCCATCC GATGCGCAGGAGGCCGGGACCCCCAACAAGCCCCTCCATCC < 41bp 0.431391978447171 0.808783180663487 0.20200309 0.40746638 prediction 0.617566361326975 Functional Gain - GJD4 ENSG00000177291 CDS Human protein_coding chr10:35897130 chr10:35897134 synonymous SNV . 0 25 hm5C_associated_SNPs_101380 0 0 0 0 0 exosome 0.500231643921087 0.500087337110311 0 0 hm5C_site_54525 DeepMRMD:0;iRNA_m5C:0 54526 chr19 4793724 4793724 1 + C A BLCA 4793720 + 4793700 4793740 41 GCCTTCAAGAAGACGGCCTACGAGCTGCTGGACGAGAAGCT GCCTTCAAGAAGACGGCCTACGAGATGCTGGACGAGAAGCT < 41bp 0.428929000527246 0.808739567662971 0.34228334 0.6839084 prediction 0.617479135325941 Functional Gain - FEM1A ENSG00000141965 CDS Human protein_coding chr19:4793720 chr19:4793724 nonsynonymous SNV 0.941 2 25 hm5C_associated_SNPs_101381 0 0 1 0 0 Ribosome 0.50023164392109 0.500231643921093 0.3678168 5.77315972805081e-15 hm5C_site_54526 DeepMRMD:0.3678168;iRNA_m5C:5.77315972805081e-15 54527 chr12 5153548 5153548 1 + C A LUSC 5153544 + 5153524 5153564 41 CCGGACCCGGGAGTGCGGCCCTTGCCTCCGCTGCCAGAGGA CCGGACCCGGGAGTGCGGCCCTTGACTCCGCTGCCAGAGGA < 41bp 0.546321886404991 0.855047859808971 0.59313595 0.7786321 prediction 0.61745194680796 Functional Gain - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5153544 chr12:5153548 nonsynonymous SNV 0.064 1 25 hm5C_associated_SNPs_101382 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.3709923 0 hm5C_site_54527 DeepMRMD:0.3709923;iRNA_m5C:0 54528 chr5 140812277 140812277 1 + C A HNSC 140812273 + 140812253 140812293 41 GTAGTGGCCGTCCAGGACCACGGCCAGCCCCCTCTCTCCGC GTAGTGGCCGTCCAGGACCACGGCAAGCCCCCTCTCTCCGC < 41bp 0.429908115507233 0.808724223427106 0.34204668 0.43601218 prediction 0.617448446854211 Functional Gain - PCDHGA12 ENSG00000253159 CDS Human protein_coding chr5:140812273 chr5:140812277 nonsynonymous SNV 0.586 1 25 hm5C_associated_SNPs_101383 0 0 0 0 0 exosome 0.500231643916331 0.500231629486119 0 0 hm5C_site_54528 DeepMRMD:0;iRNA_m5C:0 54529 chr20 2375200 2375200 1 + C A LUSC 2375196 + 2375176 2375216 41 AGCTGGTGGTTCGCAGGGGCCAGTCGTTCAGCCTCACGCTG AGCTGGTGGTTCGCAGGGGCCAGTAGTTCAGCCTCACGCTG < 41bp 0.423980858441611 0.808721489931366 0.73338085 0.7982507 prediction 0.617442979862731 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2375196 chr20:2375200 stopgain 0.256 0 25 hm5C_associated_SNPs_101384 0 0 0 0 1 exosome 0.500231663014998 0.500231602778229 0.1297397 0 hm5C_site_54529 DeepMRMD:0.1297397;iRNA_m5C:0 54530 chr5 2753468 2753468 1 + C A UCEC 2753464 + 2753444 2753484 41 GCTCCTCCTGAGCCGGCAGGCTCCCGGTAGGCGCGGTCCAG GCTCCTCCTGAGCCGGCAGGCTCCAGGTAGGCGCGGTCCAG < 41bp 0.431141838251651 0.80868701902992 0.44223225 0.7782366 prediction 0.61737403805984 Functional Gain - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2753464 chr5:2753468 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_101385 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.5564732 0 hm5C_site_54530 DeepMRMD:0.5564732;iRNA_m5C:0 54531 chr11 6220795 6220795 1 + C A KIRC 6220791 + 6220771 6220811 41 GTTCTTTGTACATGCACTGACTGCCATGGAATCAGGTGTGC GTTCTTTGTACATGCACTGACTGCAATGGAATCAGGTGTGC < 41bp 0.573684835454152 0.882338060737811 0.055710524 0.22731423 prediction 0.617306450567319 Functional Gain - OR52W1 ENSG00000175485 CDS Human protein_coding chr11:6220791 chr11:6220795 synonymous SNV . 0 25 hm5C_associated_SNPs_101386 0 0 0 0 0 unknown 0.500233096658888 0.500232646147946 0 0 hm5C_site_54531 DeepMRMD:0;iRNA_m5C:0 54532 chr5 33937926 33937926 1 + C A LUAD 33937922 + 33937902 33937942 41 AAGTTCAACGCGGTGCCCTTCAGCCAGGAGTATTTCCTGTG AAGTTCAACGCGGTGCCCTTCAGCAAGGAGTATTTCCTGTG < 41bp 0.422057028741734 0.808638144005803 0.07591462 0.13120359 prediction 0.617276288011605 Functional Gain - RXFP3 ENSG00000182631 CDS Human protein_coding chr5:33937922 chr5:33937926 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_101387 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_54532 DeepMRMD:0;iRNA_m5C:0 54533 chr4 77003167 77003167 1 + C A LUSC 77003163 + 77003143 77003183 41 CCCGAAAGACTCAAATCTTTCTCCCTATGAATTTTAAGGAT CCCGAAAGACTCAAATCTTTCTCCATATGAATTTTAAGGAT < 41bp 0.414561821715172 0.808595217346668 0.17112097 0.95394325 prediction 0.617190434693337 Functional Gain - ART3 ENSG00000156219 CDS Human protein_coding chr4:77003163 chr4:77003167 nonsynonymous SNV 0.040 4 25 hm5C_associated_SNPs_101388 0 0 0 0 0 membrane 0.500231643921093 0.500231559904296 0.9078865 0 hm5C_site_54533 DeepMRMD:0.9078865;iRNA_m5C:0 54534 chr1 210415271 210415271 1 + C A UCEC 210415267 + 210415247 210415287 41 TGCCTCCACTGCTGCCTCCTCTCCCTCCGCCTCTTCTTCCT TGCCTCCACTGCTGCCTCCTCTCCATCCGCCTCTTCTTCCT < 41bp 0.392220164329859 0.808593837563399 0.1850887 0.9613146 prediction 0.617187675126798 Functional Gain - SERTAD4 ENSG00000082497 CDS Human protein_coding chr1:210415267 chr1:210415271 synonymous SNV . 0 25 hm5C_associated_SNPs_101389 0 0 1 0 0 exosome 0.500231643921092 0.500231643921126 0.9226292 6.63913368725844e-14 hm5C_site_54534 DeepMRMD:0.9226292;iRNA_m5C:6.63913368725844e-14 54535 chr15 41745191 41745191 1 + C A PAAD 41745187 + 41745167 41745207 41 GAAGAAACAGGCCAACAAAACTGCCTCCTCAGGCAGTTCAG GAAGAAACAGGCCAACAAAACTGCATCCTCAGGCAGTTCAG < 41bp 0.398877223147475 0.808585921852146 0.3996672 0.22653085 prediction 0.617171843704292 Functional Gain - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41745187 chr15:41745191 synonymous SNV . 0 25 hm5C_associated_SNPs_101390 0 0 1 0 2 Cytosol 0.500231644257576 0.500231641783311 0 0 hm5C_site_54535 DeepMRMD:0;iRNA_m5C:0 54536 chr7 64167281 64167281 1 + C A GBM 64167277 + 64167257 64167297 41 AATGTGGCAAGGCCTTTAAACAGGCCTCACACCTTACTATA AATGTGGCAAGGCCTTTAAACAGGACTCACACCTTACTATA < 41bp 0.555908144375526 0.864489923495547 0.91337633 0.85349023 prediction 0.617163558240041 Functional Gain - ZNF107 ENSG00000196247 CDS Human protein_coding chr7:64167277 chr7:64167281 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101391 0 0 1 0 0 Nucleus 0.500231644097325 0.5002316439211 0 0 hm5C_site_54536 DeepMRMD:0;iRNA_m5C:0 54537 chr12 109523803 109523803 1 + T G rs564857150 109523800 + 109523780 109523820 41 TGTCCAGGAAAAAAGTAAAACTGTACTGTTGCGTGTGCAAG TGTCCAGGAAAAAAGTAAAACTGGACTGTTGCGTGTGCAAG < 41bp 0.479027315313863 0.808570632464738 0.43589598 0.5065984 prediction 0.617141264929475 Functional Gain - USP30 ENSG00000135093 UTR3 Human protein_coding chr12:109523800 chr12:109523803 . . 0 24 hm5C_associated_SNPs_101392 0 0 0 0 0 Endoplasmic reticulum 0.500236516670224 0.500231644126913 0.0131968 0 hm5C_site_54537 DeepMRMD:0.0131968;iRNA_m5C:0 54538 chr7 106508148 106508148 1 + C A LUSC 106508144 + 106508124 106508164 41 ATCGAGTTCGTGCTGCCCACCAGCCAGCGCAAATGCAAGAG ATCGAGTTCGTGCTGCCCACCAGCAAGCGCAAATGCAAGAG < 41bp 0.586092164421333 0.894626820845328 0.04951787 0.07073575 prediction 0.617069312847989 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508144 chr7:106508148 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_101393 0 0 0 0 0 Cytosol 0.500231684903789 0.500236998279346 0 1.06267511128522e-05 hm5C_site_54538 DeepMRMD:0;iRNA_m5C:1.06267511128522e-05 54539 chr7 23245844 23245844 1 + C A rs181446203 23245840 + 23245820 23245860 41 CGGCCTCGACGAAACCCCGCCGAGCCGCCGAGACGCAGTGT CGGCCTCGACGAAACCCCGCCGAGACGCCGAGACGCAGTGT < 41bp 0.504448582424053 0.812951384256653 0.25796825 0.2563629 prediction 0.617005603665201 Functional Gain - NUPL2;GPNMB ENSG00000226816 ncRNA_exonic Human lincRNA chr7:23245840 chr7:23245844 . . 0 25 hm5C_associated_SNPs_101394 0 0 0 0 0 unknown 0.500236945247084 0.50023138792989 0 0 hm5C_site_54539 DeepMRMD:0;iRNA_m5C:0 54540 chr4 56738061 56738061 1 + T G rs112233016 56738058 + 56738038 56738078 41 AAACAGCAACAGCAGCGATTCAGTGATTTGCGAGAGCTTTT AAACAGCAACAGCAGCGATTCAGGGATTTGCGAGAGCTTTT < 41bp 0.570461990626241 0.878912705711951 0.24568808 0.8925612 prediction 0.61690143017142 Functional Gain - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56738058 chr4:56738061 nonsynonymous SNV 0.027 0 24 hm5C_associated_SNPs_101395 0 0 1 0 2 Cytosol 0.500217781214282 0.500231643924913 0.7851224 2.77254212606159e-05 hm5C_site_54540 DeepMRMD:0.7851224;iRNA_m5C:2.77254212606159e-05 54541 chr20 34022015 34022015 1 + A C STAD 34022018 - 34021998 34022038 41 CCAGCAAGAACCTTAAGGCTCGCTGCAGTCGGAAGGCACTG CCAGCAAGAACCTTAAGGCTCGCGGCAGTCGGAAGGCACTG < 41bp 0.428003525297233 0.808445640648104 0.05937305 0.3331228 prediction 0.616891281296208 Functional Gain - GDF5;GDF5OS ENSG00000125965;ENSG00000204183 CDS Human other chr20:34022018 chr20:34022015 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_101396 0 0 0 0 0 unknown 0.500231643930966 0.500231643921092 0 0 hm5C_site_54541 DeepMRMD:0;iRNA_m5C:0 54542 chr11 58891882 58891882 1 + C A LUAD 58891878 + 58891858 58891898 41 GTTTACAGCATATGGTAAACCCAGCGAGAGTATCTACTCAG GTTTACAGCATATGGTAAACCCAGAGAGAGTATCTACTCAG < 41bp 0.555938599776937 0.864368319601632 0.09971383 0.17993835 prediction 0.616859439649389 Functional Gain - FAM111B ENSG00000189057 CDS Human protein_coding chr11:58891878 chr11:58891882 nonsynonymous SNV 0.023 0 25 hm5C_associated_SNPs_101397 0 0 1 0 0 Cytosol 0.500492127951611 0.500235537284997 0 0 hm5C_site_54542 DeepMRMD:0;iRNA_m5C:0 54543 chr14 74416996 74416996 1 + G T rs78801603 74417000 - 74416980 74417020 41 CGTCGCACTCAGAACTCCCGCAGGCCCACCTACGTAGTGCG CGTCGCACTCAGAACTCCCGCAGGACCACCTACGTAGTGCG < 41bp 0.504223102190429 0.812644436943182 0.87510085 0.90223444 prediction 0.616842669505506 Functional Gain - COQ6;FAM161B ENSG00000119723;ENSG00000156050 UTR5 Human other chr14:74417000 chr14:74416996 . . 0 25 hm5C_associated_SNPs_101398 1 0 0 0 0 unknown 0.500231643921063 0.500231643921092 0.0542671799999999 5.75095526755831e-14 hm5C_site_54543 DeepMRMD:0.0542671799999999;iRNA_m5C:5.75095526755831e-14 not specified not specified 54544 chr17 40817744 40817744 1 + T A COAD 40817740 + 40817720 40817760 41 ACCACCACCCTGCGCTACCCCGGCTACATGAACAATGACCT ACCACCACCCTGCGCTACCCCGGCAACATGAACAATGACCT < 41bp 0.495645115471799 0.80842099996774 0.24210626 0.4159652 prediction 0.61684199993548 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817740 chr17:40817744 nonsynonymous SNV 0.976 4 25 hm5C_associated_SNPs_101399 0 0 0 0 1 Cytosol 0.500231588235511 0.500230547826097 0 0 hm5C_site_54544 DeepMRMD:0;iRNA_m5C:0 54545 chr3 42982786 42982786 1 + C A LUAD 42982782 + 42982762 42982802 41 GGAATGGGCCATCATGGTGCCTGCCGAGAGGGCCTTGTACA GGAATGGGCCATCATGGTGCCTGCAGAGAGGGCCTTGTACA < 41bp 0.592583196971235 0.900936727542771 0.014815658 0.04933256 prediction 0.616707061143073 Functional Gain - KRBOX1 ENSG00000240747;ENSG00000273291 CDS Human other chr3:42982782 chr3:42982786 synonymous SNV . 0 25 hm5C_associated_SNPs_101400 0 0 0 0 2 Nucleus 0.500231643921093 0.500231645172417 0 2.50264742263084e-09 hm5C_site_54545 DeepMRMD:0;iRNA_m5C:2.50264742263084e-09 54546 chr3 148744247 148744247 1 + C A OV 148744243 + 148744223 148744263 41 AATGAACTGTTTGCAGCTTTCAGACTTGGTCTATACACTGG AATGAACTGTTTGCAGCTTTCAGAATTGGTCTATACACTGG < 41bp 0.438825995578896 0.808350885245518 0.31194413 0.414985 prediction 0.616701770491035 Functional Gain - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148744243 chr3:148744247 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_101401 0 0 1 0 2 Cytosol 0.500231639632221 0.500231681142759 0 8.30210764579675e-08 hm5C_site_54546 DeepMRMD:0;iRNA_m5C:8.30210764579675e-08 54547 chr8 182580 182580 1 + C A rs114199088 182576 + 182556 182596 41 GCCCGGAAATGCTCCGAAGCCTGTCGCCCAGCTGCCAGATC GCCCGGAAATGCTCCGAAGCCTGTAGCCCAGCTGCCAGATC < 41bp 0.499635978659473 0.808318927635285 0.05144 0.10252729 prediction 0.616637855270569 Functional Gain - ZNF596 ENSG00000172748 UTR5 Human protein_coding chr8:182576 chr8:182580 . . 0 25 hm5C_associated_SNPs_101402 0 0 1 0 1 cytosol 0.500231580827614 0.500231643917209 0 1.26179189097186e-07 hm5C_site_54547 DeepMRMD:0;iRNA_m5C:1.26179189097186e-07 54548 chr16 2580811 2580811 1 + A C BRCA 2580813 - 2580793 2580833 41 GCCTGCTTTCCTGGGCTGCCCCTGGGGCTTGTGGGCTGAGA GCCTGCTTTCCTGGGCTGCCCCGGGGGCTTGTGGGCTGAGA < 41bp 0.492317349474342 0.808299467247476 0.3466041 0.91420937 prediction 0.616598934494952 Functional Gain - CEMP1 ENSG00000205923 CDS Human protein_coding chr16:2580813 chr16:2580811 synonymous SNV . 0 23 hm5C_associated_SNPs_101403 0 0 0 0 0 exosome 0.500231643921093 0.500231643920964 0.82841874 0 hm5C_site_54548 DeepMRMD:0.82841874;iRNA_m5C:0 54549 chr9 91616415 91616415 1 + C A rs114214031 91616411 + 91616391 91616431 41 CAAGGTCAACATTCTGATGTCTGGCAAGAAGACGTTCAGCC CAAGGTCAACATTCTGATGTCTGGAAAGAAGACGTTCAGCC < 41bp 0.578921728958859 0.887203896954062 0.14279687 0.21586683 prediction 0.616564335990407 Functional Gain - S1PR3 ENSG00000213694 CDS Human protein_coding chr9:91616411 chr9:91616415 synonymous SNV . 0 25 hm5C_associated_SNPs_101404 0 0 0 0 0 cytosol 0.500231675374664 0.500231491783132 0 0 hm5C_site_54549 DeepMRMD:0;iRNA_m5C:0 54550 chr6 27782983 27782983 1 + C A UCEC 27782979 + 27782959 27782999 41 GAAGCAGGTCCACCCCGACACCGGCATCTCTTCCAAGGCTA GAAGCAGGTCCACCCCGACACCGGAATCTCTTCCAAGGCTA < 41bp 0.536796734538971 0.845069138507592 0.058157563 0.17518598 prediction 0.616544807937241 Functional Gain - HIST1H2BM ENSG00000196374 CDS Human other chr6:27782979 chr6:27782983 synonymous SNV . 0 25 hm5C_associated_SNPs_101405 0 0 1 0 0 nucleus 0.500231643921266 0.500231643921086 0 0 hm5C_site_54550 DeepMRMD:0;iRNA_m5C:0 54551 chr11 89431736 89431736 1 + C A SARC 89431732 + 89431712 89431752 41 CTGTTGCAGCCTTCACAGTGCAGGCAGCTGCAGAGACTTTG CTGTTGCAGCCTTCACAGTGCAGGAAGCTGCAGAGACTTTG < 41bp 0.468798399393044 0.808237591960825 0.13502234 0.2274743 prediction 0.616475183921651 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89431732 chr11:89431736 . . 0 25 hm5C_associated_SNPs_101406 0 0 0 0 0 unknown 0.50023186330613 0.500230424629895 0 0 hm5C_site_54551 DeepMRMD:0;iRNA_m5C:0 54552 chr16 67575459 67575459 1 + C A OV 67575455 + 67575435 67575475 41 ATCAATGACCTTGGTACCATCAAGCTCAGCCTGGAAGTCAC ATCAATGACCTTGGTACCATCAAGATCAGCCTGGAAGTCAC < 41bp 0.422504398011633 0.808212021560153 0.15803552 0.3406079 prediction 0.616424043120307 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575455 chr16:67575459 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_101407 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_54552 DeepMRMD:0;iRNA_m5C:0 54553 chr6 26468289 26468289 1 + C A COAD 26468285 + 26468265 26468305 41 CTAGGGGAGAGCGTGCCTGACAACCCAGAGAGATTCGACAG CTAGGGGAGAGCGTGCCTGACAACACAGAGAGATTCGACAG < 41bp 0.5806528437374 0.888862804130204 0.28119248 0.12964648 prediction 0.616419920785609 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26468285 chr6:26468289 nonsynonymous SNV 0.944 3 25 hm5C_associated_SNPs_101408 0 0 0 3 0 Endoplasmic reticulum 0.500231649740953 0.500235001719515 0 6.70395712520921e-06 hm5C_site_54553 DeepMRMD:0;iRNA_m5C:6.70395712520921e-06 54554 chr17 6025090 6025090 1 + C A rs76532705 6025086 + 6025066 6025106 41 CATGAGAGCTAGTTAGTACTCAGCCTGACCCCTAGGTCTGG CATGAGAGCTAGTTAGTACTCAGCATGACCCCTAGGTCTGG < 41bp 0.544769273243427 0.852953361438098 0.42054346 0.3296394 prediction 0.616368176389341 Functional Gain - WSCD1 ENSG00000179314 UTR3 Human protein_coding chr17:6025086 chr17:6025090 . . 0 25 hm5C_associated_SNPs_101409 0 0 0 0 0 exosome 0.500231643822818 0.500232184472102 0 1.08129856757344e-06 hm5C_site_54554 DeepMRMD:0;iRNA_m5C:1.08129856757344e-06 54555 chr10 125426339 125426339 1 + C A LUAD 125426335 + 125426315 125426355 41 GGCTGCACGCGCTCACCTTCCCAGCCGCCGCGCTCGCCCTG GGCTGCACGCGCTCACCTTCCCAGACGCCGCGCTCGCCCTG < 41bp 0.449493008194854 0.808167480884004 0.56330097 0.75272405 prediction 0.616334961768009 Functional Gain - GPR26 ENSG00000154478 CDS Human protein_coding chr10:125426335 chr10:125426339 nonsynonymous SNV 0.195 1 25 hm5C_associated_SNPs_101410 0 0 0 0 0 exosome 0.500231608358611 0.500230005710628 0.37884616 0 hm5C_site_54555 DeepMRMD:0.37884616;iRNA_m5C:0 54556 chr9 22447478 22447478 1 + C A rs374668199 22447474 + 22447454 22447494 41 CGAGCGCCAGCGCGTCATGGCCGCCCAGGTGGCGCTGCGCA CGAGCGCCAGCGCGTCATGGCCGCACAGGTGGCGCTGCGCA < 41bp 0.430926104617235 0.808164233846432 0.15038463 0.1933552 prediction 0.616328467692863 Functional Gain - DMRTA1 ENSG00000176399 CDS Human protein_coding chr9:22447474 chr9:22447478 synonymous SNV . 0 25 hm5C_associated_SNPs_101411 0 0 0 0 0 exosome 0.500231643989607 0.500231643082407 0 0 hm5C_site_54556 DeepMRMD:0;iRNA_m5C:0 54557 chr3 183957262 183957262 1 + C A ESCA 183957258 + 183957238 183957278 41 CCGAAGCCTCTCATCCCCTCCAGGCCGGGCAAACCAAGTCC CCGAAGCCTCTCATCCCCTCCAGGACGGGCAAACCAAGTCC < 41bp 0.413978789925007 0.808158180867001 0.26282674 0.12891689 prediction 0.616316361734001 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183957258 chr3:183957262 synonymous SNV . 0 25 hm5C_associated_SNPs_101412 0 0 0 0 1 exosome 0.500231436171552 0.500231445956612 0 1.95701199690035e-08 hm5C_site_54557 DeepMRMD:0;iRNA_m5C:1.95701199690035e-08 54558 chr19 10754452 10754452 1 + C A rs141207788 10754448 + 10754428 10754468 41 GCTGCTGGCCACAGTGAACACCCACGTTTATTCCTGCCTGC GCTGCTGGCCACAGTGAACACCCAAGTTTATTCCTGCCTGC < 41bp 0.442154526722256 0.808151485066395 0.11701316 0.24972612 prediction 0.61630297013279 Functional Gain - SLC44A2 ENSG00000129353 UTR3 Human protein_coding chr19:10754448 chr19:10754452 . . 0 25 hm5C_associated_SNPs_101413 0 0 1 0 0 Ribosome 0.500231643896678 0.500231665962039 0 4.41307219656295e-08 hm5C_site_54558 DeepMRMD:0;iRNA_m5C:4.41307219656295e-08 54559 chr5 132387724 132387724 1 + C A rs114233919 132387720 + 132387700 132387740 41 CTTTCGAGATCTTCTCCGCCCCCGCTACCGGCGCCTCCTCT CTTTCGAGATCTTCTCCGCCCCCGATACCGGCGCCTCCTCT < 41bp 0.464341259433747 0.808140297796207 0.062947094 0.0662722 prediction 0.616280595592414 Functional Gain - HSPA4 ENSG00000170606 UTR5 Human protein_coding chr5:132387720 chr5:132387724 . . 0 25 hm5C_associated_SNPs_101414 0 0 1 0 0 Cytosol 0.500231643921012 0.500231643921092 0 1.61426427780498e-13 hm5C_site_54559 DeepMRMD:0;iRNA_m5C:1.61426427780498e-13 54560 chr9 132572678 132572678 1 + C A rs111440015 132572674 + 132572654 132572694 41 ACCTCTGCAGCAGACCTGGACAGACAGGCCCCTCCCGCCTG ACCTCTGCAGCAGACCTGGACAGAAAGGCCCCTCCCGCCTG < 41bp 0.538153055670626 0.846287598914465 0.10446423 0.25447896 prediction 0.616269086487677 Functional Gain - TOR1B ENSG00000136816 UTR3 Human protein_coding chr9:132572674 chr9:132572678 . . 0 25 hm5C_associated_SNPs_101415 0 0 1 0 0 Endoplasmic reticulum 0.500231643924022 0.500231643921093 0 0 hm5C_site_54560 DeepMRMD:0;iRNA_m5C:0 54561 chr22 36123113 36123113 1 + C A LUSC 36123109 + 36123089 36123129 41 CAGCAGAGGAACTGAGAGCACTTGCTAAGAAGCTGGAGCAG CAGCAGAGGAACTGAGAGCACTTGATAAGAAGCTGGAGCAG < 41bp 0.580364609131444 0.888473599378827 0.27117068 0.38444936 prediction 0.616217980494766 Functional Gain - APOL5 ENSG00000128313 CDS Human protein_coding chr22:36123109 chr22:36123113 nonsynonymous SNV 0.016 3 25 hm5C_associated_SNPs_101416 0 0 0 0 0 unknown 0.5002326909268 0.500231845558104 0 0 hm5C_site_54561 DeepMRMD:0;iRNA_m5C:0 54562 chr8 8090332 8090332 1 + T G rs527964025 8090329 + 8090309 8090349 41 GCCGTAGACTGTGAGGCATCCTGTGTGTGTGAAGCACCCGC GCCGTAGACTGTGAGGCATCCTGGGTGTGTGAAGCACCCGC < 41bp 0.444386999951058 0.808101867741367 0.07697618 0.760841 prediction 0.616203735482734 Functional Gain - FAM86B3P ENSG00000173295 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr8:8090329 chr8:8090332 . . 0 24 hm5C_associated_SNPs_101417 0 0 0 1 2 unknown 0.500231642604079 0.500231649315264 0.521682 1.3422371658578e-08 hm5C_site_54562 DeepMRMD:0.521682;iRNA_m5C:1.3422371658578e-08 54563 chr11 73008107 73008107 1 + C A GBM 73008103 + 73008083 73008123 41 CGCACTGTCTGCTATGACCTCAGCCCGCCTGCCCTGGCCAC CGCACTGTCTGCTATGACCTCAGCACGCCTGCCCTGGCCAC < 41bp 0.41269306098755 0.808095501848074 0.46001273 0.4853043 prediction 0.616191003696147 Functional Gain - P2RY6 ENSG00000171631 CDS Human protein_coding chr11:73008103 chr11:73008107 nonsynonymous SNV 0.659 0 25 hm5C_associated_SNPs_101418 0 0 1 0 0 exosome 0.500231853817578 0.500231655397564 0 0 hm5C_site_54563 DeepMRMD:0;iRNA_m5C:0 54564 chr1 162336977 162336977 1 + C A STAD 162336973 + 162336953 162336993 41 CGGGCTTGGCTGACTTTGCCCACCCTGCGGGCAGCCCCTTA CGGGCTTGGCTGACTTTGCCCACCATGCGGGCAGCCCCTTA < 41bp 0.41998065597166 0.808094983972767 0.07942557 0.09655434 prediction 0.616189967945534 Functional Gain - NOS1AP ENSG00000198929;ENSG00000254706 CDS Human other chr1:162336973 chr1:162336977 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_101419 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_54564 DeepMRMD:0;iRNA_m5C:0 54565 chr7 27135780 27135780 1 + C A rs555460757 27135776 + 27135756 27135796 41 GCATTTAAATCCCCGGCGCTCCGCCGTCTAGGTGACGCGCA GCATTTAAATCCCCGGCGCTCCGCAGTCTAGGTGACGCGCA < 41bp 0.528870035801434 0.836950929622485 0.10852915 0.18215668 prediction 0.616161787642102 Functional Gain - HOTAIRM1 ENSG00000233429 ncRNA_exonic Human antisense chr7:27135776 chr7:27135780 . . 0 25 hm5C_associated_SNPs_101420 0 0 1 0 0 unknown 0.500231643921109 0.500231643904775 0 0 hm5C_site_54565 DeepMRMD:0;iRNA_m5C:0 54566 chr14 55226975 55226975 1 + C A rs149535594 55226971 + 55226951 55226991 41 GCCTACAGCTCCCCGAGCACCACCCCCGAGGCTCGCCGCCG GCCTACAGCTCCCCGAGCACCACCACCGAGGCTCGCCGCCG < 41bp 0.403076354705148 0.808074845113295 0.0906944 0.1434825 prediction 0.61614969022659 Functional Gain - SAMD4A ENSG00000020577 CDS Human protein_coding chr14:55226971 chr14:55226975 nonsynonymous SNV 0.136 1 25 hm5C_associated_SNPs_101421 0 0 1 0 1 chromatin 0.500231607477745 0.500231643921438 0 7.28873863486967e-08 hm5C_site_54566 DeepMRMD:0;iRNA_m5C:7.28873863486967e-08 54567 chr19 39915686 39915686 1 + C A rs183572190 39915682 + 39915662 39915702 41 GGGGGAGGGGCCCCCGCAGCCTCCCGGGGCTCCTGGTCCTC GGGGGAGGGGCCCCCGCAGCCTCCAGGGGCTCCTGGTCCTC < 41bp 0.585434633011227 0.893498232036747 0.08764675 0.9441128 prediction 0.61612719805104 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39915682 chr19:39915686 synonymous SNV . 0 25 hm5C_associated_SNPs_101422 0 0 1 0 0 Nucleus 0.500231568027342 0.500231690326958 0.8882256 2.44599231535858e-07 hm5C_site_54567 DeepMRMD:0.8882256;iRNA_m5C:2.44599231535858e-07 54568 chr8 22432377 22432377 1 + C A rs710098 22432373 + 22432353 22432393 41 GCATCTGCAGACGACCCCCGCAGCCTTTCCCTCGGACCCCC GCATCTGCAGACGACCCCCGCAGCATTTCCCTCGGACCCCC < 41bp 0.575312915206134 0.883365060727326 0.56967753 0.7838391 prediction 0.616104291042384 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22432373 chr8:22432377 synonymous SNV . 0 25 hm5C_associated_SNPs_101423 0 0 1 0 0 Cytosol 0.500231644253185 0.500231643921093 0.42832314 0 hm5C_site_54568 DeepMRMD:0.42832314;iRNA_m5C:0 54569 chr22 18898421 18898421 1 + T G rs185483691 18898418 + 18898398 18898438 41 CAGGCGGTGGAGCACCGGATCCGTGAGGAGCAGCGGGCGAT CAGGCGGTGGAGCACCGGATCCGGGAGGAGCAGCGGGCGAT < 41bp 0.431348600626844 0.808048841818827 0.4720018 0.90495646 prediction 0.616097683637655 Functional Gain - DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18898418 chr22:18898421 synonymous SNV . 0 24 hm5C_associated_SNPs_101424 0 0 0 1 1 Ribosome 0.500232026517583 0.500231647018007 0.80991292 0 hm5C_site_54569 DeepMRMD:0.80991292;iRNA_m5C:0 54570 chr5 140590510 140590510 1 + C A rs574218346 140590506 + 140590486 140590526 41 CTACCTGCCTCTCCCGGAGGCGGCCCCGGCCCAGGCCCAGG CTACCTGCCTCTCCCGGAGGCGGCACCGGCCCAGGCCCAGG < 41bp 0.56792095880477 0.875951055684138 0.4774912 0.44451487 prediction 0.616060193758737 Functional Gain - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140590506 chr5:140590510 synonymous SNV . 0 25 hm5C_associated_SNPs_101425 0 0 0 0 0 exosome 0.500231643921092 0.500231643858561 0 0 hm5C_site_54570 DeepMRMD:0;iRNA_m5C:0 54571 chr15 91478585 91478585 1 + C A rs572718253 91478581 + 91478561 91478601 41 GTGAGTGGTCCAGGGACCCCCGAGCCCCGGCCGGCCACCCC GTGAGTGGTCCAGGGACCCCCGAGACCCGGCCGGCCACCCC < 41bp 0.453283494535902 0.808028051329403 0.89328337 0.91391885 prediction 0.616056102658807 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91478581 chr15:91478585 nonsynonymous SNV 0.199 1 25 hm5C_associated_SNPs_101426 0 0 1 0 1 Nucleus 0.500231643916073 0.50023164551175 0.0412709599999999 3.19135429194262e-09 hm5C_site_54571 DeepMRMD:0.0412709599999999;iRNA_m5C:3.19135429194262e-09 54572 chr1 35260580 35260580 1 + T G UCEC 35260578 + 35260558 35260598 41 ACCCCCGACCCAGGGCACCTCCTCAGACCCTTACACGGACC ACCCCCGACCCAGGGCACCTCCGCAGACCCTTACACGGACC < 41bp 0.483111778895583 0.807993897758406 0.13986135 0.43434268 prediction 0.615987795516813 Functional Gain - GJA4 ENSG00000187513 CDS Human protein_coding chr1:35260578 chr1:35260580 nonsynonymous SNV 0.227 1 23 hm5C_associated_SNPs_101427 0 0 0 0 0 cytosol 0.500231643919871 0.500231643924161 0 8.57980353430321e-12 hm5C_site_54572 DeepMRMD:0;iRNA_m5C:8.57980353430321e-12 54573 chr8 24255215 24255215 1 + C A LUSC 24255211 + 24255191 24255231 41 TAAAGAAAGAAGACTTTCTTCGGGCACAGAAATACATTGAT TAAAGAAAGAAGACTTTCTTCGGGAACAGAAATACATTGAT < 41bp 0.570787453252622 0.87878001131162 0.5754367 0.6427641 prediction 0.615985116117997 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24255211 chr8:24255215 nonsynonymous SNV 0.612 0 25 hm5C_associated_SNPs_101428 0 0 0 0 2 exosome 0.500231643921094 0.50023164392109 0.1346548 0 hm5C_site_54573 DeepMRMD:0.1346548;iRNA_m5C:0 54574 chr16 22826046 22826046 1 + T G rs189013090 22826043 + 22826023 22826063 41 CTTACCTGTGTTACAGCTTCCTGTGCTGCTGCGACGACCTG CTTACCTGTGTTACAGCTTCCTGGGCTGCTGCGACGACCTG < 41bp 0.570254871038132 0.878236893597132 0.14302191 0.37911123 prediction 0.615964045118001 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22826043 chr16:22826046 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_101429 0 0 0 0 0 exosome 0.500231619997381 0.500231643921092 0 4.78474235787729e-08 hm5C_site_54574 DeepMRMD:0;iRNA_m5C:4.78474235787729e-08 54575 chr9 98801276 98801276 1 + C A rs75729479 98801272 + 98801252 98801292 41 GGACAGAGGCCTCCTGCCCACAGCCGTGGAGATGAACCACC GGACAGAGGCCTCCTGCCCACAGCAGTGGAGATGAACCACC < 41bp 0.480762943674777 0.807939569839403 0.25379503 0.37483883 prediction 0.615879139678805 Functional Gain - LINC00092;LOC158435 ENSG00000225194;ENSG00000237212 intergenic Human other chr9:98801272 chr9:98801276 . . 0 25 hm5C_associated_SNPs_101430 0 0 0 0 0 unknown 0.500231643921095 0.500231643920284 0 0 hm5C_site_54575 DeepMRMD:0;iRNA_m5C:0 54576 chr19 616639 616639 1 + C A rs565148977 616635 + 616615 616655 41 GGGCAGGGCCGGCGGGGCAGCCCCCTCCGCGCCCCCGGCCG GGGCAGGGCCGGCGGGGCAGCCCCATCCGCGCCCCCGGCCG < 41bp 0.510642412321904 0.818527756018781 0.31392646 0.820719 prediction 0.615770687393753 Functional Gain - HCN2 ENSG00000266939 ncRNA_intronic Human other chr19:616635 chr19:616639 . . 0 25 hm5C_associated_SNPs_101431 0 0 0 0 0 chromatin 0.500231643921042 0.50023157946795 0.641438 0 hm5C_site_54576 DeepMRMD:0.641438;iRNA_m5C:0 54577 chr14 94467567 94467567 1 + C A rs59039338 94467563 + 94467543 94467583 41 GCACTACGGGAAGCTCTTCACAGCCAGCCAGGACACGCAGA GCACTACGGGAAGCTCTTCACAGCAAGCCAGGACACGCAGA < 41bp 0.550636756718166 0.858520406470654 0.070250124 0.28888538 prediction 0.615767299504976 Functional Gain - C14orf48 ENSG00000175699 ncRNA_exonic Human protein_coding chr14:94467563 chr14:94467567 . . 0 25 hm5C_associated_SNPs_101432 0 0 0 1 2 unknown 0.500231645456076 0.500231643921007 0 0 hm5C_site_54577 DeepMRMD:0;iRNA_m5C:0 54578 chr6 27114964 27114964 1 + T G THCA 27114961 + 27114941 27114981 41 CGCGCCAAGGCCAAGACCCGCTCTTCTCGGGCTGGGCTTCA CGCGCCAAGGCCAAGACCCGCTCGTCTCGGGCTGGGCTTCA < 41bp 0.452681722486938 0.807882544525438 0.16825849 0.13352826 prediction 0.615765089050876 Functional Gain - HIST1H2AH ENSG00000184825 CDS Human other chr6:27114961 chr6:27114964 synonymous SNV . 0 24 hm5C_associated_SNPs_101433 0 0 1 0 0 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_54578 DeepMRMD:0;iRNA_m5C:0 54579 chr3 38155899 38155899 1 + C A STAD 38155895 + 38155875 38155915 41 GCGGTGGGCTGCCCCATCAGCTCCCTGAGGACCACCTCCTA GCGGTGGGCTGCCCCATCAGCTCCATGAGGACCACCTCCTA < 41bp 0.384791078357362 0.807849033576898 0.16383123 0.90857196 prediction 0.615698067153795 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38155895 chr3:38155899 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_101434 0 0 0 0 2 chromatin 0.500231643921092 0.50023164392276 0.81714392 3.3344438321592e-12 hm5C_site_54579 DeepMRMD:0.81714392;iRNA_m5C:3.3344438321592e-12 54580 chr19 56372911 56372911 1 + T G BRCA 56372909 + 56372889 56372929 41 CCAGCTGTCGCCTTCAGAAGCTTGGGTGAGTTGAGAATCGA CCAGCTGTCGCCTTCAGAAGCTGGGGTGAGTTGAGAATCGA < 41bp 0.503688298638877 0.811517531703808 0.43640742 0.903916 prediction 0.615658466129863 Functional Gain - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56372909 chr19:56372911 synonymous SNV . 0 23 hm5C_associated_SNPs_101435 0 0 0 0 1 exosome 0.50023164392109 0.500231644316239 0.807832 7.90297827180098e-10 hm5C_site_54580 DeepMRMD:0.807832;iRNA_m5C:7.90297827180098e-10 54581 chr2 20870532 20870532 1 + C A rs184953707 20870528 + 20870508 20870548 41 CCCCCCCGCGCGTTCTGCCTCTTGCTGCGCGCAGTGGCAGG CCCCCCCGCGCGTTCTGCCTCTTGATGCGCGCAGTGGCAGG < 41bp 0.454461794668382 0.807762904610586 0.09561497 0.39369905 prediction 0.615525809221172 Functional Gain - GDF7 ENSG00000143869 CDS Human protein_coding chr2:20870528 chr2:20870532 nonsynonymous SNV 0.579 3 25 hm5C_associated_SNPs_101436 0 0 1 0 0 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_54581 DeepMRMD:0;iRNA_m5C:0 54582 chr5 104435424 104435424 1 + C A LUSC 104435420 + 104435400 104435440 41 TTTTACAGAGGTTCTGACTGCTGCCTGCTTACTTTTAGTGT TTTTACAGAGGTTCTGACTGCTGCATGCTTACTTTTAGTGT < 41bp 0.476550690474637 0.807762890185777 0.049892932 0.056699455 prediction 0.615525780371553 Functional Gain - RAB9BP1 ENSG00000232159 ncRNA_exonic Human processed_pseudogene chr5:104435420 chr5:104435424 . . 0 25 hm5C_associated_SNPs_101437 0 0 0 2 0 unknown 0.500231715673951 0.500247366970454 0 3.13025930063215e-05 hm5C_site_54582 DeepMRMD:0;iRNA_m5C:3.13025930063215e-05 54583 chr11 5372941 5372941 1 + C A OV 5372937 + 5372917 5372957 41 CTTAGCTATGTTGGCAGCTACAGACCTCGGAGTGACATTGA CTTAGCTATGTTGGCAGCTACAGAACTCGGAGTGACATTGA < 41bp 0.563616688776964 0.87137250854319 0.088605106 0.19440353 prediction 0.615511639532452 Functional Gain - OR51B6 ENSG00000176239 CDS Human protein_coding chr11:5372937 chr11:5372941 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_101438 0 0 0 0 0 unknown 0.500231930526127 0.500231647126126 0 0 hm5C_site_54583 DeepMRMD:0;iRNA_m5C:0 54584 chr7 73245853 73245853 1 + C A COAD 73245849 + 73245829 73245869 41 GTGGGGGGCAAGTGTACCAACTGCCTGGAGGATGAAAGCGC GTGGGGGGCAAGTGTACCAACTGCATGGAGGATGAAAGCGC < 41bp 0.58618282725944 0.893917646201713 0.21425474 0.17937085 prediction 0.615469637884546 Functional Gain - CLDN4 ENSG00000189143 CDS Human protein_coding chr7:73245849 chr7:73245853 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101439 0 0 1 0 0 Ribosome 0.500231643931692 0.500231643921092 0 0 hm5C_site_54584 DeepMRMD:0;iRNA_m5C:0 54585 chr2 108863805 108863805 1 + C A COAD 108863801 + 108863781 108863821 41 CCAAGCCTGATGATCTTATTCTGGCAACTTACCCAAAGTCA CCAAGCCTGATGATCTTATTCTGGAAACTTACCCAAAGTCA < 41bp 0.570724829361791 0.878448891882084 0.11941287 0.23094869 prediction 0.615448125040585 Functional Gain - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108863801 chr2:108863805 nonsynonymous SNV 0.000 4 25 hm5C_associated_SNPs_101440 0 0 0 0 1 exosome 0.500231623309041 0.500231643909059 0 4.12000373817278e-08 hm5C_site_54585 DeepMRMD:0;iRNA_m5C:4.12000373817278e-08 54586 chr22 29837601 29837601 1 + A C UCEC 29837603 - 29837583 29837623 41 GATTCTGTGTGATGCACCCACTTCGGACGCTCCTGAGGTCG GATTCTGTGTGATGCACCCACTGCGGACGCTCCTGAGGTCG < 41bp 0.50284296596692 0.810560130528121 0.13155365 0.38086528 prediction 0.615434329122402 Functional Gain - RFPL1 ENSG00000128250 CDS Human protein_coding chr22:29837603 chr22:29837601 synonymous SNV . 0 23 hm5C_associated_SNPs_101441 0 0 0 0 0 exosome 0.500231289334111 0.500231637387668 0 6.96107114617206e-07 hm5C_site_54586 DeepMRMD:0;iRNA_m5C:6.96107114617206e-07 54587 chr1 15767019 15767019 1 + T G SKCM 15767017 + 15766997 15767037 41 CCAGTACCTCAAGAACGACACGTGGAGGCATACGTGTGGCG CCAGTACCTCAAGAACGACACGGGGAGGCATACGTGTGGCG < 41bp 0.467464095021588 0.807704469624583 0.21744996 0.9157642 prediction 0.615408939249165 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15767017 chr1:15767019 nonsynonymous SNV 0.077 4 23 hm5C_associated_SNPs_101442 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.8315284 0 hm5C_site_54587 DeepMRMD:0.8315284;iRNA_m5C:0 54588 chr22 31520993 31520993 1 + T G rs200108828 31520990 + 31520970 31521010 41 CCCGACCAATCCTGGCTCCACTGTGTACCCCTGAAGGGCAG CCCGACCAATCCTGGCTCCACTGGGTACCCCTGAAGGGCAG < 41bp 0.435898172729998 0.807697223881344 0.06247294 0.23022541 prediction 0.615394447762689 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31520990 chr22:31520993 nonsynonymous SNV 0.983 1 24 hm5C_associated_SNPs_101443 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_54588 DeepMRMD:0;iRNA_m5C:0 54589 chr8 97847376 97847376 1 + C A LUAD 97847372 + 97847352 97847392 41 CAAGGTGGGGGCTTTGGCATCTCTCATTCGATCCGTGGCCT CAAGGTGGGGGCTTTGGCATCTCTAATTCGATCCGTGGCCT < 41bp 0.41431303678647 0.807694151862983 0.33258095 0.8788921 prediction 0.615388303725965 Functional Gain - CPQ ENSG00000104324 CDS Human protein_coding chr8:97847372 chr8:97847376 synonymous SNV . 0 25 hm5C_associated_SNPs_101444 0 0 1 0 1 Endoplasmic reticulum 0.500231642091589 0.500231643918311 0.7577842 3.65344332564632e-09 hm5C_site_54589 DeepMRMD:0.7577842;iRNA_m5C:3.65344332564632e-09 54590 chr1 203740015 203740015 1 + T A LUAD 203740011 + 203739991 203740031 41 TTGCGGGACTCCTCGCCATCCTCCTGGTCGTTGCGGTTTTC TTGCGGGACTCCTCGCCATCCTCCAGGTCGTTGCGGTTTTC < 41bp 0.477306739612461 0.807687905889568 0.13138717 0.93733764 prediction 0.615375811779136 Functional Gain - LAX1 ENSG00000122188 CDS Human protein_coding chr1:203740011 chr1:203740015 nonsynonymous SNV 0.017 4 25 hm5C_associated_SNPs_101445 0 0 0 0 1 exosome 0.50023164392093 0.500231643921063 0.87467528 2.66675570514963e-13 hm5C_site_54590 DeepMRMD:0.87467528;iRNA_m5C:2.66675570514963e-13 54591 chr19 37976049 37976049 1 + C A ESCA 37976045 + 37976025 37976065 41 AAGGAATGCAAAAAAACCTTCAGGCAGCATGCACACCTTGC AAGGAATGCAAAAAAACCTTCAGGAAGCATGCACACCTTGC < 41bp 0.439955211629864 0.807660757016871 0.508432 0.76604867 prediction 0.615321514033742 Functional Gain - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37976045 chr19:37976049 nonsynonymous SNV 0.277 0 25 hm5C_associated_SNPs_101446 0 0 0 0 0 exosome 0.500231643921092 0.500231643921026 0.51523334 0 hm5C_site_54591 DeepMRMD:0.51523334;iRNA_m5C:0 54592 chr7 150171403 150171403 1 + T A LUAD 150171399 + 150171379 150171419 41 GTACAGGCCCCCATGCCTTCCTGCTGGTGACACCACTGGGC GTACAGGCCCCCATGCCTTCCTGCAGGTGACACCACTGGGC < 41bp 0.512668210244077 0.82029707610826 0.09986016 0.12176973 prediction 0.615257731728365 Functional Gain - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150171399 chr7:150171403 nonsynonymous SNV 0.984 3 25 hm5C_associated_SNPs_101447 0 0 0 0 0 cytosol 0.500231643970383 0.500231644307482 0 6.74198474825971e-10 hm5C_site_54592 DeepMRMD:0;iRNA_m5C:6.74198474825971e-10 54593 chr12 55615577 55615577 1 + C A LUAD 55615573 + 55615553 55615593 41 TCCCTCTTCTACGGAACAGCCAGTCTGACCTACCTGCGGCC TCCCTCTTCTACGGAACAGCCAGTATGACCTACCTGCGGCC < 41bp 0.441051890125011 0.807621380584432 0.24898437 0.41535658 prediction 0.615242761168864 Functional Gain - OR10A7 ENSG00000179919 CDS Human protein_coding chr12:55615573 chr12:55615577 nonsynonymous SNV 0.848 0 25 hm5C_associated_SNPs_101448 0 0 0 0 0 unknown 0.500231643922601 0.500231643920675 0 0 hm5C_site_54593 DeepMRMD:0;iRNA_m5C:0 54594 chr9 90501514 90501514 1 + C A rs4076794 90501510 + 90501490 90501530 41 CAGGAGCTCCGGAAGGTTCTCTGACAAGGGGTGCTTAGGGT CAGGAGCTCCGGAAGGTTCTCTGAAAAGGGGTGCTTAGGGT < 41bp 0.430582364968903 0.807609117131638 0.1480371 0.17541525 prediction 0.615218234263276 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90501510 chr9:90501514 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101449 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54594 DeepMRMD:0;iRNA_m5C:0 54595 chr16 67913012 67913012 1 + C A BRCA 67913008 + 67912988 67913028 41 ACGGCACACTGAGGTGCTGCCTGCCGAAGAGGAAAATGACA ACGGCACACTGAGGTGCTGCCTGCAGAAGAGGAAAATGACA < 41bp 0.405828139708231 0.807587715222595 0.08005056 0.20026714 prediction 0.61517543044519 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67913008 chr16:67913012 synonymous SNV . 0 25 hm5C_associated_SNPs_101450 0 0 1 0 1 Cytosol 0.500231643910098 0.500231643789377 0 0 hm5C_site_54595 DeepMRMD:0;iRNA_m5C:0 54596 chr1 48708137 48708137 1 + C A rs138087820 48708133 + 48708113 48708153 41 TCTTCTTTCCCTCCAGCTCACACGCCTCACATGGTGGACTC TCTTCTTTCCCTCCAGCTCACACGACTCACATGGTGGACTC < 41bp 0.58022085303502 0.887799790880882 0.1713118 0.31202275 prediction 0.615157875691724 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48708133 chr1:48708137 synonymous SNV . 0 25 hm5C_associated_SNPs_101451 0 0 1 0 1 nucleus 0.500231640240679 0.500231643913097 0 7.34483474040815e-09 hm5C_site_54596 DeepMRMD:0;iRNA_m5C:7.34483474040815e-09 54597 chr6 167438310 167438310 1 + C A GBM 167438306 + 167438286 167438326 41 AAGCAAGCAGGAAGTCTGGCCTCGCTCTCGGATGCACCCCC AAGCAAGCAGGAAGTCTGGCCTCGATCTCGGATGCACCCCC < 41bp 0.493981963792141 0.80755963624233 0.21896216 0.8536687 prediction 0.61511927248466 Functional Gain - FGFR1OP ENSG00000213066 CDS Human protein_coding chr6:167438306 chr6:167438310 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_101452 0 0 1 0 2 Ribosome 0.500231590663134 0.500231642800764 0.7073374 1.04275260870423e-07 hm5C_site_54597 DeepMRMD:0.7073374;iRNA_m5C:1.04275260870423e-07 54598 chr2 27803682 27803682 1 + C A COAD 27803678 + 27803658 27803698 41 AGAGACAAGAGGTCAGCTGACAAGCTAACGCCAGCAGGCTC AGAGACAAGAGGTCAGCTGACAAGATAACGCCAGCAGGCTC < 41bp 0.562911637708145 0.870469726334305 0.13541138 0.22182202 prediction 0.615116177252319 Functional Gain - C2orf16 ENSG00000221843 CDS Human protein_coding chr2:27803678 chr2:27803682 nonsynonymous SNV 0.044 0 25 hm5C_associated_SNPs_101453 0 0 0 0 0 chromatin 0.500236553482338 0.500232263122713 0 0 hm5C_site_54598 DeepMRMD:0;iRNA_m5C:0 54599 chr17 76493049 76493049 1 + C A rs572484150 76493045 + 76493025 76493065 41 ATTACAGGCGTGAGCCACCACGCCCGGCCCCCAGATGGACT ATTACAGGCGTGAGCCACCACGCCAGGCCCCCAGATGGACT < 41bp 0.406106963328438 0.80753766293626 0.026918322 0.15186965 prediction 0.61507532587252 Functional Gain - DNAH17-AS1 ENSG00000267432 ncRNA_exonic Human processed_transcript chr17:76493045 chr17:76493049 . . 0 25 hm5C_associated_SNPs_101454 0 0 0 0 1 unknown 0.500231643921209 0.500231643921093 0 0 hm5C_site_54599 DeepMRMD:0;iRNA_m5C:0 54600 chr14 64938102 64938102 1 + C A rs147509672 64938098 + 64938078 64938118 41 GCCAGGATGGTCTTGATCTCCTGACCTCATGATCCTCCCGC GCCAGGATGGTCTTGATCTCCTGAACTCATGATCCTCCCGC < 41bp 0.472891161887136 0.807517623512238 0.038043052 0.090154916 prediction 0.615035247024477 Functional Gain - AKAP5 ENSG00000179841 UTR3 Human protein_coding chr14:64938098 chr14:64938102 . . 0 25 hm5C_associated_SNPs_101455 0 0 0 0 0 Nucleus 0.500231643240754 0.500231643922578 0 1.36364808334122e-09 hm5C_site_54600 DeepMRMD:0;iRNA_m5C:1.36364808334122e-09 54601 chr14 52794162 52794162 1 + C A LUSC 52794158 + 52794138 52794178 41 CACAGTCAGATGCCAGTAAACAGGCTGACCTTTGAGGTCAG CACAGTCAGATGCCAGTAAACAGGATGACCTTTGAGGTCAG < 41bp 0.556600533488536 0.8641170292209 0.81559265 0.76938254 prediction 0.615032991464729 Functional Gain - PTGER2 ENSG00000125384 CDS Human protein_coding chr14:52794158 chr14:52794162 nonsynonymous SNV 0.972 0 25 hm5C_associated_SNPs_101456 0 0 0 0 0 exosome 0.500231643922139 0.500231643921128 0 0 hm5C_site_54601 DeepMRMD:0;iRNA_m5C:0 54602 chr9 126132529 126132529 1 + C A LUAD 126132525 + 126132505 126132545 41 CGACTGTTCTGTGCAGCTCACTGGCTGCCAGGGCCACACCT CGACTGTTCTGTGCAGCTCACTGGATGCCAGGGCCACACCT < 41bp 0.582432772231381 0.889934133619571 0.5865397 0.8878987 prediction 0.61500272277638 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126132525 chr9:126132529 synonymous SNV . 0 25 hm5C_associated_SNPs_101457 0 0 0 0 0 exosome 0.500231676138099 0.502154676717247 0.602718 0.00384600115829525 hm5C_site_54602 DeepMRMD:0.602718;iRNA_m5C:0.00384600115829525 54603 chr22 25715064 25715064 1 + C A rs532314236 25715060 + 25715040 25715080 41 ACCTTAGACTCAGAAGGTGACTAGCGGGGAGTAAACGGGAG ACCTTAGACTCAGAAGGTGACTAGAGGGGAGTAAACGGGAG < 41bp 0.459400354994975 0.807487284582585 0.13775578 0.42909098 prediction 0.614974569165171 Functional Gain - IGLL3P ENSG00000206066 ncRNA_intronic Human unprocessed_pseudogene chr22:25715060 chr22:25715064 . . 0 25 hm5C_associated_SNPs_101458 0 0 0 0 2 unknown 0.500231643921078 0.500231643921099 0 4.04121180963557e-14 hm5C_site_54603 DeepMRMD:0;iRNA_m5C:4.04121180963557e-14 54604 chr21 19289641 19289641 1 + C A rs544972359 19289637 + 19289617 19289657 41 ACTCAGACTGAGCTACTTCACTGGCTTTCCTGGTTCTCCAG ACTCAGACTGAGCTACTTCACTGGATTTCCTGGTTCTCCAG < 41bp 0.493489023455161 0.807485924270455 0.36558837 0.66334337 prediction 0.614971848540909 Functional Gain - CHODL ENSG00000154645 UTR5 Human protein_coding chr21:19289637 chr21:19289641 . . 0 25 hm5C_associated_SNPs_101459 0 0 0 0 1 exosome 0.500231642978608 0.500231641142734 0.32668674 0 hm5C_site_54604 DeepMRMD:0.32668674;iRNA_m5C:0 54605 chrX 37850253 37850253 1 + T A LUAD 37850249 + 37850229 37850269 41 GTTCCTCCACAATAAATACCCTCCTTACCTTGCTCGATTGC GTTCCTCCACAATAAATACCCTCCATACCTTGCTCGATTGC < 41bp 0.504454649964329 0.811940207746615 0.052172035 0.95105696 prediction 0.614971115564572 Functional Gain - HYPM ENSG00000187516 CDS Human protein_coding chrX:37850249 chrX:37850253 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_101460 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.90211392 0 hm5C_site_54605 DeepMRMD:0.90211392;iRNA_m5C:0 54606 chr6 147637445 147637445 1 + C A PRAD 147637441 + 147637421 147637461 41 GCAGCCACCACCTTTGCCAACACCCGTGGGAGGGTCCAACC GCAGCCACCACCTTTGCCAACACCAGTGGGAGGGTCCAACC < 41bp 0.407906101604245 0.807480189715905 0.24263495 0.385948 prediction 0.614960379431811 Functional Gain - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147637441 chr6:147637445 synonymous SNV . 0 25 hm5C_associated_SNPs_101461 0 0 1 0 2 Nucleus 0.500231643921092 0.500231644279129 0 7.16072756645758e-10 hm5C_site_54606 DeepMRMD:0;iRNA_m5C:7.16072756645758e-10 54607 chr12 57920109 57920109 1 + C A LUAD 57920105 + 57920085 57920125 41 TCTCCTCAGGGAGCCCTCCCCAGCCCAGGCACCCCATCCAG TCTCCTCAGGGAGCCCTCCCCAGCACAGGCACCCCATCCAG < 41bp 0.586470163796612 0.89393588976174 0.6051072 0.6588373 prediction 0.614931451930257 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57920105 chr12:57920109 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_101462 0 0 1 0 1 chromatin 0.500231643921091 0.500231643921092 0.1074602 1.99840144432528e-15 hm5C_site_54607 DeepMRMD:0.1074602;iRNA_m5C:1.99840144432528e-15 54608 chr19 58579299 58579299 1 + C A ACC 58579295 + 58579275 58579315 41 TTCCGGCAGAGCACACACCTCACCCAACACCAGCGAATCCA TTCCGGCAGAGCACACACCTCACCAAACACCAGCGAATCCA < 41bp 0.395989336836411 0.807459420496115 0.06313422 0.13620058 prediction 0.61491884099223 Functional Gain - ZNF135 ENSG00000176293 CDS Human protein_coding chr19:58579295 chr19:58579299 nonsynonymous SNV 0.557 0 25 hm5C_associated_SNPs_101463 0 0 0 0 0 exosome 0.500231643921081 0.500231720213463 0 1.52584763490893e-07 hm5C_site_54608 DeepMRMD:0;iRNA_m5C:1.52584763490893e-07 54609 chr6 31107550 31107550 1 + C A COAD 31107546 + 31107526 31107566 41 CCACCCAGAGCTGTTTGCATCAGTCCTGCCAATGGCTCCGG CCACCCAGAGCTGTTTGCATCAGTACTGCCAATGGCTCCGG < 41bp 0.525956637436133 0.833380727559822 0.2543427 0.2361744 prediction 0.614848180247378 Functional Gain - PSORS1C1 ENSG00000204540 CDS Human protein_coding chr6:31107546 chr6:31107550 synonymous SNV . 0 25 hm5C_associated_SNPs_101464 0 0 0 0 0 Cytosol 0.500231643919353 0.500231643921101 0 3.49476003691507e-12 hm5C_site_54609 DeepMRMD:0;iRNA_m5C:3.49476003691507e-12 54610 chrX 26212999 26212999 1 + C A LUSC 26212995 + 26212975 26213015 41 CAAGATAAGTACGTGGTTTACCGGCAGGTGTGCAACAGTGA CAAGATAAGTACGTGGTTTACCGGAAGGTGTGCAACAGTGA < 41bp 0.564067297756091 0.87144883787262 0.47354022 0.63877845 prediction 0.614763080233058 Functional Gain - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26212995 chrX:26212999 nonsynonymous SNV 0.084 1 25 hm5C_associated_SNPs_101465 0 0 0 0 0 unknown 0.50023163985374 0.500231643823848 0.2775569 7.94021426386848e-09 hm5C_site_54610 DeepMRMD:0.2775569;iRNA_m5C:7.94021426386848e-09 54611 chr5 175110817 175110817 1 + C A LUSC 175110813 + 175110793 175110833 41 ATGGGCTGGTCACCTTCTACCTCCCGCTACTGATCATGTGC ATGGGCTGGTCACCTTCTACCTCCAGCTACTGATCATGTGC < 41bp 0.403191146395339 0.807347921068076 0.046532184 0.9281995 prediction 0.614695842136151 Functional Gain - HRH2 ENSG00000113749 CDS Human protein_coding chr5:175110813 chr5:175110817 nonsynonymous SNV 0.471 4 25 hm5C_associated_SNPs_101466 0 0 0 0 0 nucleus 0.500231643921092 0.500231701892936 0.856399 1.1594368731771e-07 hm5C_site_54611 DeepMRMD:0.856399;iRNA_m5C:1.1594368731771e-07 54612 chrX 75649077 75649077 1 + C A LUAD 75649073 + 75649053 75649093 41 CTAAGCACCCCCGTGCCACCCACCCGTGATGAGGGACCGAG CTAAGCACCCCCGTGCCACCCACCAGTGATGAGGGACCGAG < 41bp 0.582068216424689 0.889402986570926 0.044380337 0.189291 prediction 0.614669540292475 Functional Gain - MAGEE1 ENSG00000198934 CDS Human protein_coding chrX:75649073 chrX:75649077 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101467 0 0 0 0 0 membrane 0.500231643921092 0.500231643866797 0 0 hm5C_site_54612 DeepMRMD:0;iRNA_m5C:0 54613 chr21 46077991 46077991 1 + C A UCEC 46077987 + 46077967 46078007 41 GCTATGTGCCCGTGAGCTGCCAGTCCTCCGTGTGCATGCCC GCTATGTGCCCGTGAGCTGCCAGTACTCCGTGTGCATGCCC < 41bp 0.53433529701563 0.841667374132178 0.036856025 0.040293217 prediction 0.614664154233096 Functional Gain - KRTAP12-3 ENSG00000205439 CDS Human protein_coding chr21:46077987 chr21:46077991 nonsynonymous SNV 0.163 1 25 hm5C_associated_SNPs_101468 0 0 0 0 0 exosome 0.5002316439208 0.500231641128663 0 0 hm5C_site_54613 DeepMRMD:0;iRNA_m5C:0 54614 chr1 27679961 27679961 1 + C A SARC 27679957 + 27679937 27679977 41 GCCAACCGCCAGCTGGGGGGCACACGCCTCAGCCTGGGCAC GCCAACCGCCAGCTGGGGGGCACAAGCCTCAGCCTGGGCAC < 41bp 0.446051381245773 0.807329857871555 0.20223603 0.4385806 prediction 0.61465971574311 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27679957 chr1:27679961 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101469 0 0 1 0 1 Ribosome 0.500231644575631 0.500231643921102 0 0 hm5C_site_54614 DeepMRMD:0;iRNA_m5C:0 54615 chr19 50435755 50435755 1 + C A rs1152227 50435751 + 50435731 50435771 41 CCCTCTGGAGCCTCCCTTACCCCCCGGCACCCTCCCCCAAC CCCTCTGGAGCCTCCCTTACCCCCAGGCACCCTCCCCCAAC < 41bp 0.407635798405999 0.807286970950878 0.025120944 0.18485278 prediction 0.614573941901756 Functional Gain - ATF5 ENSG00000169136 CDS Human protein_coding chr19:50435751 chr19:50435755 synonymous SNV . 0 25 hm5C_associated_SNPs_101470 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_54615 DeepMRMD:0;iRNA_m5C:0 54616 chrX 73641730 73641730 1 + C A LUAD 73641726 + 73641706 73641746 41 GCCCACGCCTACGGTAGAGACCCGCGGCACCGCGCGCGGCT GCCCACGCCTACGGTAGAGACCCGAGGCACCGCGCGCGGCT < 41bp 0.58203607975671 0.889309480676903 0.29449397 0.8502693 prediction 0.614546801840386 Functional Gain - SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73641726 chrX:73641730 synonymous SNV . 0 25 hm5C_associated_SNPs_101471 0 0 0 0 0 Ribosome 0.500231642843641 0.500231639511258 0.7005386 0 hm5C_site_54616 DeepMRMD:0.7005386;iRNA_m5C:0 54617 chr1 248685351 248685351 1 + T G SKCM 248685349 + 248685329 248685369 41 CGGCCACTGCGCTACATAGCCATTATGCACCCCAGGTTCTG CGGCCACTGCGCTACATAGCCAGTATGCACCCCAGGTTCTG < 41bp 0.48443178903439 0.807250414117246 0.17441532 0.4049711 prediction 0.614500828234491 Functional Gain - OR2G6 ENSG00000188558 CDS Human protein_coding chr1:248685349 chr1:248685351 nonsynonymous SNV 0.012 1 23 hm5C_associated_SNPs_101472 0 0 0 0 0 unknown 0.500231643933292 0.500231639624617 0 0 hm5C_site_54617 DeepMRMD:0;iRNA_m5C:0 54618 chr3 72221320 72221320 1 + C A rs185525534 72221316 + 72221296 72221336 41 GGCGTTTGGCTCTGTGCTCTCTGGCCAGGTCAGCCTGACCC GGCGTTTGGCTCTGTGCTCTCTGGACAGGTCAGCCTGACCC < 41bp 0.547632021391025 0.854875324031728 0.11087644 0.29856002 prediction 0.614486605281405 Functional Gain - LINC00870 ENSG00000243083 ncRNA_exonic Human lincRNA chr3:72221316 chr3:72221320 . . 0 25 hm5C_associated_SNPs_101473 0 0 0 0 0 unknown 0.500231643919917 0.500231716214261 0 1.44588687689406e-07 hm5C_site_54618 DeepMRMD:0;iRNA_m5C:1.44588687689406e-07 54619 chr12 113515329 113515329 1 + C A PRAD 113515325 + 113515305 113515345 41 GAACGACGGCGGCGCATGGACGGCCTACGATATGGACATCT GAACGACGGCGGCGCATGGACGGCATACGATATGGACATCT < 41bp 0.585475539491418 0.89268817484218 0.10750511 0.109027594 prediction 0.614425270701524 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113515325 chr12:113515329 synonymous SNV . 0 25 hm5C_associated_SNPs_101474 0 0 0 0 0 Endoplasmic reticulum 0.500231638395783 0.500215972190571 0 0 hm5C_site_54619 DeepMRMD:0;iRNA_m5C:0 54620 chr5 72469139 72469139 1 + C A GBM 72469135 + 72469115 72469155 41 GTTCTCCGTCACTCCTTACACACCCAGCACCGCTGACATCC GTTCTCCGTCACTCCTTACACACCAAGCACCGCTGACATCC < 41bp 0.592297650676765 0.89950250633489 0.035136193 0.061096758 prediction 0.61440971131625 Functional Gain - TMEM174 ENSG00000164325 CDS Human protein_coding chr5:72469135 chr5:72469139 synonymous SNV . 0 25 hm5C_associated_SNPs_101475 0 0 0 0 0 unknown 0.500231642533736 0.500231643925755 0 2.78403899933721e-09 hm5C_site_54620 DeepMRMD:0;iRNA_m5C:2.78403899933721e-09 54621 chr17 40843276 40843276 1 + C A UCEC 40843272 + 40843252 40843292 41 GGACCGGAGCTGTGTGGACCCTGCCTTGTACTGCAACTGTG GGACCGGAGCTGTGTGGACCCTGCATTGTACTGCAACTGTG < 41bp 0.59837631693208 0.905569045401881 0.082766116 0.50828207 prediction 0.614385456939602 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40843272 chr17:40843276 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101476 0 0 0 0 1 Cytosol 0.500231288270754 0.500231652454065 0.0165641400000001 7.28366622571031e-07 hm5C_site_54621 DeepMRMD:0.0165641400000001;iRNA_m5C:7.28366622571031e-07 54622 chr3 49042515 49042515 1 + T G rs62621815 49042513 + 49042493 49042533 41 AACTGGGGGCTGCCTTCAATCCTCAGACCAGGAACACCCAT AACTGGGGGCTGCCTTCAATCCGCAGACCAGGAACACCCAT < 41bp 0.490621854154732 0.807165251321305 0.111278206 0.72805786 prediction 0.61433050264261 Functional Gain - P4HTM ENSG00000178467 CDS Human protein_coding chr3:49042513 chr3:49042515 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_101477 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.45611572 0 hm5C_site_54622 DeepMRMD:0.45611572;iRNA_m5C:0 54623 chr14 77844532 77844532 1 + C A THCA 77844528 + 77844508 77844548 41 TGAGAAGAAAAGGACAGAGCCACCCGAGCAGGCTAGACTGG TGAGAAGAAAAGGACAGAGCCACCAGAGCAGGCTAGACTGG < 41bp 0.419940115317008 0.807125438600227 0.060722202 0.14566025 prediction 0.614250877200454 Functional Gain - SAMD15 ENSG00000100583 CDS Human protein_coding chr14:77844528 chr14:77844532 synonymous SNV . 0 25 hm5C_associated_SNPs_101478 0 0 0 0 0 exosome 0.500231640535086 0.500231621340467 0 0 hm5C_site_54623 DeepMRMD:0;iRNA_m5C:0 54624 chr19 39396013 39396013 1 + C A rs201990071 39396009 + 39395989 39396029 41 GCCCTGCTTCAGCCCCGCCCCCGGCGCCCCAGGGAAGCCCC GCCCTGCTTCAGCCCCGCCCCCGGAGCCCCAGGGAAGCCCC < 41bp 0.571194090058834 0.878281520363919 0.31173456 0.61179924 prediction 0.614174860610169 Functional Gain - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39396009 chr19:39396013 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_101479 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921095 0.22359848 4.66293670342566e-15 hm5C_site_54624 DeepMRMD:0.22359848;iRNA_m5C:4.66293670342566e-15 54625 chr10 118969235 118969235 1 + C A LUAD 118969231 + 118969211 118969251 41 TTCAAGAAAAAACCGGACCCCAAGCCCGCAGATGAAGCTGT TTCAAGAAAAAACCGGACCCCAAGACCGCAGATGAAGCTGT < 41bp 0.428267661263496 0.807079697462997 0.07353985 0.14624271 prediction 0.614159394925994 Functional Gain - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118969231 chr10:118969235 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_101480 0 0 0 0 0 unknown 0.500231644704907 0.500231643932043 0 0 hm5C_site_54625 DeepMRMD:0;iRNA_m5C:0 54626 chr11 64335265 64335265 1 + C A OV 64335261 + 64335241 64335281 41 CCATGGCCGGCCTCGCCATTCTAGCCAACATGCTGGTGCCG CCATGGCCGGCCTCGCCATTCTAGACAACATGCTGGTGCCG < 41bp 0.569653856603351 0.876700281686674 0.2463567 0.20597318 prediction 0.614092850166646 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64335261 chr11:64335265 nonsynonymous SNV 0.461 1 25 hm5C_associated_SNPs_101481 0 0 0 0 1 nucleoplasm 0.500231643921092 0.500231643921092 0 0 hm5C_site_54626 DeepMRMD:0;iRNA_m5C:0 54627 chr3 169644664 169644664 1 + C A SARC 169644660 + 169644640 169644680 41 ATGCTGAGAGTTCCAAAAGTCAAGCAGAAGAAAAAATCCTA ATGCTGAGAGTTCCAAAAGTCAAGAAGAAGAAAAAATCCTA < 41bp 0.411286958039758 0.807043676056205 0.32121134 0.76563525 prediction 0.614087352112411 Functional Gain - SAMD7 ENSG00000187033 CDS Human protein_coding chr3:169644660 chr3:169644664 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_101482 0 0 0 0 0 membrane 0.500231643868207 0.500231643920588 0.5312705 1.04762420960469e-10 hm5C_site_54627 DeepMRMD:0.5312705;iRNA_m5C:1.04762420960469e-10 54628 chr22 32756382 32756382 1 + C A LUAD 32756378 + 32756358 32756398 41 GTGTCCGTTTGCATCCTGGGCTCCCCTCGCTTTACCTGTGG GTGTCCGTTTGCATCCTGGGCTCCACTCGCTTTACCTGTGG < 41bp 0.399756847118567 0.807031646301647 0.033744544 0.3620801 prediction 0.614063292603295 Functional Gain - RFPL3 ENSG00000128276 CDS Human protein_coding chr22:32756378 chr22:32756382 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_101483 0 0 0 0 0 exosome 0.500232313875946 0.500231643182215 0 0 hm5C_site_54628 DeepMRMD:0;iRNA_m5C:0 54629 chr2 95540574 95540574 1 + C A LUAD 95540570 + 95540550 95540590 41 TCACGCAGGACAATCTGTGCCGTGCCCAGCGCGAGCGCCTG TCACGCAGGACAATCTGTGCCGTGACCAGCGCGAGCGCCTG < 41bp 0.444829449626381 0.807023046891183 0.11007491 0.10998753 prediction 0.614046093782366 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95540570 chr2:95540574 nonsynonymous SNV 0.569 4 25 hm5C_associated_SNPs_101484 0 0 0 0 1 chromatin 0.500231643880708 0.500231643286798 0 0 hm5C_site_54629 DeepMRMD:0;iRNA_m5C:0 54630 chr13 51854687 51854687 1 + C A UCEC 51854683 + 51854663 51854703 41 TTTGCCGAGCACTGCTGTACCAAGCCATACACCTGGCAGCA TTTGCCGAGCACTGCTGTACCAAGACATACACCTGGCAGCA < 41bp 0.571527223089918 0.878548338592402 0.04750219 0.29982412 prediction 0.614042231004968 Functional Gain - FAM124A ENSG00000150510 CDS Human protein_coding chr13:51854683 chr13:51854687 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_101485 0 0 0 0 0 exosome 0.500231644895498 0.500231660046535 0 3.0302074849331e-08 hm5C_site_54630 DeepMRMD:0;iRNA_m5C:3.0302074849331e-08 54631 chrX 144909486 144909486 1 + C A LIHC 144909482 + 144909462 144909502 41 TCCAGCCTACAGAATGCAGTCTCCCAGGGCCCTGCCAAGAA TCCAGCCTACAGAATGCAGTCTCCAAGGGCCCTGCCAAGAA < 41bp 0.587978294017695 0.894985304471304 0.03382954 0.96756744 prediction 0.614014020907218 Functional Gain - TMEM257 ENSG00000221870 CDS Human protein_coding chrX:144909482 chrX:144909486 synonymous SNV . 0 25 hm5C_associated_SNPs_101486 0 0 0 0 0 unknown 0.500231643921092 0.500231643925772 0.93513488 9.35918009759007e-12 hm5C_site_54631 DeepMRMD:0.93513488;iRNA_m5C:9.35918009759007e-12 54632 chr2 219679662 219679662 1 + C A rs140842830 219679658 + 219679638 219679678 41 TCCAGAAGTACAAGGTGGTCCTGGCCCCGGAGACGGGGGAG TCCAGAAGTACAAGGTGGTCCTGGACCCGGAGACGGGGGAG < 41bp 0.577317340809812 0.884295737079171 0.69849116 0.8458692 prediction 0.613956792538717 Functional Gain - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219679658 chr2:219679662 nonsynonymous SNV 0.513 1 25 hm5C_associated_SNPs_101487 1 0 1 0 1 cytosol 0.500231629441422 0.500231643909059 0.29475608 2.89352746207783e-08 hm5C_site_54632 DeepMRMD:0.29475608;iRNA_m5C:2.89352746207783e-08 not specified not specified 54633 chr1 152659471 152659471 1 + T G rs3737859 152659469 + 152659449 152659489 41 GTCTCTTCTTGCTGTGGTCCCATCTCTGGGGGCTGCTGTGG GTCTCTTCTTGCTGTGGTCCCAGCTCTGGGGGCTGCTGTGG < 41bp 0.484320136212575 0.806974640315822 0.0745745 0.27851766 prediction 0.613949280631643 Functional Gain - LCE2B ENSG00000159455 CDS Human protein_coding chr1:152659469 chr1:152659471 nonsynonymous SNV 0.291 0 23 hm5C_associated_SNPs_101488 0 0 0 0 0 unknown 0.500231643921093 0.500231643921226 0 2.66453525910038e-13 hm5C_site_54633 DeepMRMD:0;iRNA_m5C:2.66453525910038e-13 54634 chr5 174156432 174156432 1 + C A LUSC 174156428 + 174156408 174156448 41 AAATGGCTGCAAAACCTATGCTGCCCTCCAGCTTCAGTCTC AAATGGCTGCAAAACCTATGCTGCACTCCAGCTTCAGTCTC < 41bp 0.412338770059716 0.806932317361576 0.061986655 0.099122286 prediction 0.613864634723152 Functional Gain - MSX2 ENSG00000120149 CDS Human protein_coding chr5:174156428 chr5:174156432 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101489 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54634 DeepMRMD:0;iRNA_m5C:0 54635 chr12 11323979 11323979 1 + C A rs148825190 11323975 + 11323955 11323995 41 CATGGCCCCCGCGGCGGCTCCGTCCTCCTTGGCCGTCAGGG CATGGCCCCCGCGGCGGCTCCGTCATCCTTGGCCGTCAGGG < 41bp 0.492496193767788 0.806931380228842 0.16994748 0.23324066 prediction 0.613862760457684 Functional Gain - SMIM10L1 ENSG00000256537 ncRNA_exonic Human protein_coding chr12:11323975 chr12:11323979 . . 0 25 hm5C_associated_SNPs_101490 0 0 1 0 0 exosome 0.500232541973214 0.500249415975427 0 3.37480044252381e-05 hm5C_site_54635 DeepMRMD:0;iRNA_m5C:3.37480044252381e-05 54636 chr12 7311274 7311274 1 + C A rs376972753 7311270 + 7311250 7311290 41 AGTCCTGAGGTCCTGCAGCCCCGGCCCCTCCTCCGTGACCT AGTCCTGAGGTCCTGCAGCCCCGGACCCTCCTCCGTGACCT < 41bp 0.529785616265279 0.836689011801303 0.38999808 0.41201955 prediction 0.613806791072049 Functional Gain - CLSTN3 ENSG00000139182 UTR3 Human protein_coding chr12:7311270 chr12:7311274 . . 0 25 hm5C_associated_SNPs_101491 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_54636 DeepMRMD:0;iRNA_m5C:0 54637 chr1 11579887 11579887 1 + T A LUAD 11579883 + 11579863 11579903 41 TCATCGTGCAGCTGCAGGAGCTGCTGCACCACTGGGTCCTG TCATCGTGCAGCTGCAGGAGCTGCAGCACCACTGGGTCCTG < 41bp 0.493099208747503 0.806839232444299 0.09845421 0.30474806 prediction 0.613678464888598 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11579883 chr1:11579887 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_101492 0 0 0 0 1 exosome 0.50023164393085 0.500231643942364 0 2.3028245976775e-11 hm5C_site_54637 DeepMRMD:0;iRNA_m5C:2.3028245976775e-11 54638 chr5 135364760 135364760 1 + C A rs560533561 135364756 + 135364736 135364776 41 TCCCGCTCCATGGCGCTCTTCGTGCGGCTGCTGGCTCTCGC TCCCGCTCCATGGCGCTCTTCGTGAGGCTGCTGGCTCTCGC < 41bp 0.550474311481436 0.857278317065737 0.70619714 0.83714855 prediction 0.613608011168602 Functional Gain - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135364756 chr5:135364760 synonymous SNV . 0 25 hm5C_associated_SNPs_101493 0 0 1 0 0 Endoplasmic reticulum 0.50022756021883 0.500232271725916 0.26190282 9.42301417050651e-06 hm5C_site_54638 DeepMRMD:0.26190282;iRNA_m5C:9.42301417050651e-06 54639 chr17 33496943 33496943 1 + T G BLCA 33496940 + 33496920 33496960 41 CGACAGAAAAACTGGCCAAACAGTGTCGCAAGTAAGGGGGC CGACAGAAAAACTGGCCAAACAGGGTCGCAAGTAAGGGGGC < 41bp 0.427996066811883 0.806783413850796 0.2726556 0.8885715 prediction 0.613566827701592 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33496940 chr17:33496943 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_101494 0 0 0 0 2 Nucleus 0.5002316439254 0.500231643921893 0.777143 0 hm5C_site_54639 DeepMRMD:0.777143;iRNA_m5C:0 54640 chr5 80503117 80503117 1 + C A SARC 80503113 + 80503093 80503133 41 AGTCCTTGTCGGCCATGGAGCTGGCAGAACAGATCACCCTC AGTCCTTGTCGGCCATGGAGCTGGAAGAACAGATCACCCTC < 41bp 0.430206786466656 0.806766713209378 0.38537908 0.25396818 prediction 0.613533426418756 Functional Gain - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80503113 chr5:80503117 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_101495 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54640 DeepMRMD:0;iRNA_m5C:0 54641 chr3 52453868 52453868 1 + C A STAD 52453864 + 52453844 52453884 41 CGCAGATCTTATCTAGTAAGCTGCCTCAGAGGGGCCAGTCC CGCAGATCTTATCTAGTAAGCTGCATCAGAGGGGCCAGTCC < 41bp 0.403579253057088 0.806764284248445 0.09855431 0.13442111 prediction 0.613528568496889 Functional Gain - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52453864 chr3:52453868 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_101496 0 0 0 0 2 cytosol 0.500231645832926 0.500231644205457 0 0 hm5C_site_54641 DeepMRMD:0;iRNA_m5C:0 54642 chrX 153543624 153543624 1 + T G rs139525582 153543621 + 153543601 153543641 41 GACACCAGGTACTCTACTTTCTCTGAGATATTCAACAAGGA GACACCAGGTACTCTACTTTCTCGGAGATATTCAACAAGGA < 41bp 0.437776087103808 0.806760800969816 0.09512964 0.11499217 prediction 0.613521601939632 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153543621 chrX:153543624 synonymous SNV . 0 24 hm5C_associated_SNPs_101497 0 0 0 0 1 exosome 0.500231643602178 0.500231643921096 0 6.37836006234238e-10 hm5C_site_54642 DeepMRMD:0;iRNA_m5C:6.37836006234238e-10 54643 chr7 93221028 93221028 1 + C A rs539101279 93221024 + 93221004 93221044 41 AATCACCGTCTTCTGCGTCGCTCGCGCTGGGAGCTGTAGAC AATCACCGTCTTCTGCGTCGCTCGAGCTGGGAGCTGTAGAC < 41bp 0.476935180619232 0.806735096342527 0.26909116 0.30686095 prediction 0.613470192685054 Functional Gain - CALCR;MIR4652 ENSG00000127928 UTR5 Human protein_coding chr7:93221024 chr7:93221028 . . 0 25 hm5C_associated_SNPs_101498 0 0 1 0 1 unknown 0.500231643879625 0.500232057740896 0 8.27722542506848e-07 hm5C_site_54643 DeepMRMD:0;iRNA_m5C:8.27722542506848e-07 54644 chr19 58967061 58967061 1 + T G MESO 58967059 + 58967039 58967079 41 GGGACGAGCTGGGCGAGGCTCTTCACGCTGGGGAGAAGTCC GGGACGAGCTGGGCGAGGCTCTGCACGCTGGGGAGAAGTCC < 41bp 0.510007410062019 0.816731578127867 0.5599604 0.35140228 prediction 0.613448336131696 Functional Gain - ZNF324B ENSG00000249471 CDS Human protein_coding chr19:58967059 chr19:58967061 synonymous SNV . 0 23 hm5C_associated_SNPs_101499 0 0 0 0 0 exosome 0.500231643921092 0.500231643921072 0 0 hm5C_site_54644 DeepMRMD:0;iRNA_m5C:0 54645 chr1 44137257 44137257 1 + C A rs586339 44137253 + 44137233 44137273 41 AGGAGGATGAGGAGGAAGAACAAGCAGCAGCTGCCTTGGAT AGGAGGATGAGGAGGAAGAACAAGAAGCAGCTGCCTTGGAT < 41bp 0.582850767160834 0.889571710445334 0.25614643 0.49778262 prediction 0.613441886569001 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44137253 chr1:44137257 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_101500 0 1 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_54645 DeepMRMD:0;iRNA_m5C:0 54646 chr19 8436298 8436298 1 + C A HNSC 8436294 + 8436274 8436314 41 CAGCTCACTGCACCCGTGGCCGGCCAGCTGGGCGCCACCAC CAGCTCACTGCACCCGTGGCCGGCAAGCTGGGCGCCACCAC < 41bp 0.584680070927078 0.891373851856126 0.3821514 0.7130606 prediction 0.613387561858096 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8436294 chr19:8436298 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_101501 0 0 1 0 0 Cytosol 0.500231643921091 0.500231643921092 0.4261212 2.66453525910038e-15 hm5C_site_54646 DeepMRMD:0.4261212;iRNA_m5C:2.66453525910038e-15 54647 chr1 19029741 19029741 1 + C A UCEC 19029737 + 19029717 19029757 41 ACTCTGACAGCTTCATGAATCCGGCGGCGCCCTCCAACCAC ACTCTGACAGCTTCATGAATCCGGAGGCGCCCTCCAACCAC < 41bp 0.580505670726032 0.887192292364074 0.82186663 0.9311044 prediction 0.613373243276084 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19029737 chr1:19029741 nonsynonymous SNV 0.169 1 25 hm5C_associated_SNPs_101502 0 0 0 0 1 exosome 0.5002316439129 0.500231643921039 0.21847554 1.62778679424491e-11 hm5C_site_54647 DeepMRMD:0.21847554;iRNA_m5C:1.62778679424491e-11 54648 chr17 30648026 30648026 1 + C A COAD 30648022 + 30648002 30648042 41 GTGGCTCCGCTTCCACCCGTCGGCCTATCCCCCGTGCCCTC GTGGCTCCGCTTCCACCCGTCGGCATATCCCCCGTGCCCTC < 41bp 0.582074684371312 0.888749598158693 0.28160134 0.46199474 prediction 0.613349827574763 Functional Gain - RHBDL3 ENSG00000141314 CDS Human protein_coding chr17:30648022 chr17:30648026 nonsynonymous SNV 0.242 1 25 hm5C_associated_SNPs_101503 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_54648 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 54649 chr11 55579021 55579021 1 + C A LUAD 55579017 + 55578997 55579037 41 GATGTCCCTGAGTTGAGAGTCTGCCTCTTCCTGCTGTTCCT GATGTCCCTGAGTTGAGAGTCTGCATCTTCCTGCTGTTCCT < 41bp 0.448025664766134 0.806672134892423 0.1587857 0.1889354 prediction 0.613344269784847 Functional Gain - OR5L1 ENSG00000186117 CDS Human other chr11:55579017 chr11:55579021 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_101504 0 0 0 0 0 unknown 0.500231646657431 0.500233458358285 0 3.62340170645403e-06 hm5C_site_54649 DeepMRMD:0;iRNA_m5C:3.62340170645403e-06 54650 chrX 30236898 30236898 1 + C A UCS 30236894 + 30236874 30236914 41 CCAGGAGCCTCAGAGAGCCCCAACCACTGCCGCTGCTGCGG CCAGGAGCCTCAGAGAGCCCCAACAACTGCCGCTGCTGCGG < 41bp 0.427701716575938 0.806631775499216 0.43868455 0.42599535 prediction 0.613263550998433 Functional Gain - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236894 chrX:30236898 synonymous SNV . 0 25 hm5C_associated_SNPs_101505 0 0 0 0 0 exosome 0.500231643921789 0.500231643921093 0 0 hm5C_site_54650 DeepMRMD:0;iRNA_m5C:0 54651 chrX 128902692 128902692 1 + C A rs59591703 128902688 + 128902668 128902708 41 CACCCCGGGGTTGTATACCACACCCTGGGCCCCTAATCCCA CACCCCGGGGTTGTATACCACACCATGGGCCCCTAATCCCA < 41bp 0.407480568337663 0.806623758931715 0.023052394 0.024549037 prediction 0.613247517863429 Functional Gain - XPNPEP2 ENSG00000122121 UTR3 Human protein_coding chrX:128902688 chrX:128902692 . . 0 25 hm5C_associated_SNPs_101506 0 0 0 0 0 exosome 0.50023164392095 0.500231643921126 0 3.50830475781549e-13 hm5C_site_54651 DeepMRMD:0;iRNA_m5C:3.50830475781549e-13 54652 chr17 4837660 4837660 1 + A C rs570515282 4837663 - 4837643 4837683 41 AGCCAGGCCCGGGGCACTGTCACTTGCCGTCCCCTCTGCAG AGCCAGGCCCGGGGCACTGTCACGTGCCGTCCCCTCTGCAG < 41bp 0.570085077401505 0.876674706569312 0.15678343 0.32075328 prediction 0.613179258335614 Functional Gain - GP1BA ENSG00000185245 CDS Human protein_coding chr17:4837663 chr17:4837660 nonsynonymous SNV 0.781 2 24 hm5C_associated_SNPs_101507 0 0 1 0 0 exosome 0.50023164392162 0.500231643921133 0 0 hm5C_site_54652 DeepMRMD:0;iRNA_m5C:0 54653 chr8 146278082 146278082 1 + C A OV 146278078 + 146278058 146278098 41 AGTTTCCAGCGCCCGGAATCCTTCCACTGTCTGTCTCTGCC AGTTTCCAGCGCCCGGAATCCTTCAACTGTCTGTCTCTGCC < 41bp 0.403692475086504 0.80658614177135 0.25971338 0.36623967 prediction 0.6131722835427 Functional Gain - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278078 chr8:146278082 synonymous SNV . 0 25 hm5C_associated_SNPs_101508 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54653 DeepMRMD:0;iRNA_m5C:0 54654 chr3 113673211 113673211 1 + C A BLCA 113673207 + 113673187 113673227 41 CGACCAGCCCGGGCATGGCACTGCCGGATATGTGGCATCTG CGACCAGCCCGGGCATGGCACTGCAGGATATGTGGCATCTG < 41bp 0.425008309203632 0.806551147288917 0.41356167 0.34350264 prediction 0.613102294577834 Functional Gain - ZDHHC23 ENSG00000184307 CDS Human protein_coding chr3:113673207 chr3:113673211 synonymous SNV . 0 25 hm5C_associated_SNPs_101509 0 0 1 0 1 Nucleus 0.500231637764816 0.500231643921092 0 1.23125525330892e-08 hm5C_site_54654 DeepMRMD:0;iRNA_m5C:1.23125525330892e-08 54655 chr11 66039304 66039304 1 + A C LIHC 66039306 - 66039286 66039326 41 GCAGGCATGACTTGCCCACGCCTGAGTCGCCAATCAAAAGC GCAGGCATGACTTGCCCACGCCGGAGTCGCCAATCAAAAGC < 41bp 0.49435783496741 0.806523257976534 0.29266614 0.66704714 prediction 0.613046515953068 Functional Gain - RAB1B ENSG00000174903 CDS Human protein_coding chr11:66039306 chr11:66039304 synonymous SNV . 0 23 hm5C_associated_SNPs_101510 0 0 0 0 0 Ribosome 0.500231643943886 0.500231643839771 0.33409428 0 hm5C_site_54655 DeepMRMD:0.33409428;iRNA_m5C:0 54656 chr2 74173946 74173946 1 + T A COAD 74173942 + 74173922 74173962 41 AGACATTTTCCTTTTTGAGCCGCCTGAAAGTACAGCTGGAG AGACATTTTCCTTTTTGAGCCGCCAGAAAGTACAGCTGGAG < 41bp 0.522262917605759 0.828761565046919 0.15995166 0.13477486 prediction 0.612997294882319 Functional Gain - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74173942 chr2:74173946 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_101511 0 0 1 0 1 Cytosol 0.500231643921093 0.500231643921092 0 0 hm5C_site_54656 DeepMRMD:0;iRNA_m5C:0 54657 chr6 27356925 27356925 1 + T G rs10807021 27356923 + 27356903 27356943 41 GGAAACGGGCGAAAGGGTCGCGTGTGGTTTGGCTGCAGGTC GGAAACGGGCGAAAGGGTCGCGGGTGGTTTGGCTGCAGGTC < 41bp 0.523056777287364 0.82954304172311 0.60571074 0.907599 prediction 0.612972528871493 Functional Gain - ZNF391 ENSG00000124613 intronic Human protein_coding chr6:27356923 chr6:27356925 . . 0 23 hm5C_associated_SNPs_101512 0 0 0 0 0 nucleolus 0.500231643921197 0.500231643921168 0.60377652 0 hm5C_site_54657 DeepMRMD:0.60377652;iRNA_m5C:0 54658 chr14 89307486 89307486 1 + C A COAD 89307482 + 89307462 89307502 41 GGCTATCAGAACACCCAGAACCGCCTACACAGCCCGCCCTA GGCTATCAGAACACCCAGAACCGCATACACAGCCCGCCCTA < 41bp 0.405379740988703 0.80648111889823 0.23210773 0.34981406 prediction 0.612962237796459 Functional Gain - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89307482 chr14:89307486 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101513 0 0 1 0 1 Nucleus 0.500231643927279 0.500231644234228 0 6.1389782146648e-10 hm5C_site_54658 DeepMRMD:0;iRNA_m5C:6.1389782146648e-10 54659 chr2 137814044 137814044 1 + C A CESC 137814040 + 137814020 137814060 41 GTCCCGGAGGAGTCCAGAGTCGGGCAGTGTGGTGTTTTCAT GTCCCGGAGGAGTCCAGAGTCGGGAAGTGTGGTGTTTTCAT < 41bp 0.506997873043041 0.813457330235706 0.8949873 0.90772843 prediction 0.61291891438533 Functional Gain - THSD7B ENSG00000144229 CDS Human protein_coding chr2:137814040 chr2:137814044 nonsynonymous SNV 0.980 1 25 hm5C_associated_SNPs_101514 0 0 0 0 0 nucleoplasm 0.500268312444432 0.500319395429 0.02548226 0.000102165969134038 hm5C_site_54659 DeepMRMD:0.02548226;iRNA_m5C:0.000102165969134038 54660 chr8 66619297 66619297 1 + C A STAD 66619293 + 66619273 66619313 41 CATACCACCACACCCTCCACCTCCCCCACCGCCCCTGCCTC CATACCACCACACCCTCCACCTCCACCACCGCCCCTGCCTC < 41bp 0.389499805375 0.806456881529075 0.051921725 0.94494313 prediction 0.61291376305815 Functional Gain - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66619293 chr8:66619297 synonymous SNV . 0 25 hm5C_associated_SNPs_101515 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.88988626 0 hm5C_site_54660 DeepMRMD:0.88988626;iRNA_m5C:0 54661 chr10 115970640 115970640 1 + C A LUAD 115970636 + 115970616 115970656 41 CAGGAAAGCTTGCTGAACTTCAGGCATCCCTTAGCAAGTAC CAGGAAAGCTTGCTGAACTTCAGGAATCCCTTAGCAAGTAC < 41bp 0.422795339295705 0.806437243335568 0.5256378 0.56888115 prediction 0.612874486671136 Functional Gain - TDRD1 ENSG00000095627 CDS Human protein_coding chr10:115970636 chr10:115970640 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_101516 0 0 0 0 2 exosome 0.500231649860549 0.500231643921082 0.0864866999999998 0 hm5C_site_54661 DeepMRMD:0.0864866999999998;iRNA_m5C:0 54662 chr11 2417910 2417910 1 + T A STAD 2417906 + 2417886 2417926 41 TCTTCTCCGGGAAGCTGTACCTCATCGGCATTGCTGCCATC TCTTCTCCGGGAAGCTGTACCTCAACGGCATTGCTGCCATC < 41bp 0.490864421674118 0.806433452302828 0.39464164 0.92269784 prediction 0.612866904605657 Functional Gain - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417906 chr11:2417910 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_101517 0 0 1 0 2 Ribosome 0.500231643915646 0.500231643921101 0.84539568 1.09099396183865e-11 hm5C_site_54662 DeepMRMD:0.84539568;iRNA_m5C:1.09099396183865e-11 54663 chr20 61461898 61461898 1 + C A rs73598379 61461894 + 61461874 61461914 41 GAAGGGCAGCATGGGAGACCCCGGCCTTCCAGGCCCCCAGG GAAGGGCAGCATGGGAGACCCCGGACTTCCAGGCCCCCAGG < 41bp 0.575236694806001 0.881664685411306 0.7643945 0.9083357 prediction 0.612855981210609 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61461894 chr20:61461898 synonymous SNV . 0 25 hm5C_associated_SNPs_101518 1 0 1 0 2 Cytosol 0.500231643921093 0.500231644445671 0.2878824 1.04915498511104e-09 hm5C_site_54663 DeepMRMD:0.2878824;iRNA_m5C:1.04915498511104e-09 Multiple Epiphyseal Dysplasia, Dominant Multiple Epiphyseal Dysplasia, Dominant 54664 chr12 31821368 31821368 1 + C A rs2086777 31821364 + 31821344 31821384 41 AGACAGTCTCACTTTGCTCCCAGGCTGGAATGCAGTGGCTA AGACAGTCTCACTTTGCTCCCAGGATGGAATGCAGTGGCTA < 41bp 0.482033799102357 0.806417641325716 0.8987012 0.92770565 prediction 0.612835282651432 Functional Gain - ETFBKMT ENSG00000139160 UTR3 Human protein_coding chr12:31821364 chr12:31821368 . . 0 25 hm5C_associated_SNPs_101519 0 0 0 0 0 nucleoplasm 0.500223389543273 0.500231641586142 0.0580089000000001 1.65040857380561e-05 hm5C_site_54664 DeepMRMD:0.0580089000000001;iRNA_m5C:1.65040857380561e-05 54665 chr14 57741370 57741370 1 + C A GBM 57741366 + 57741346 57741386 41 TACAAAATTGAGCCAGTTGCCTGACTTGCTTCTGCAGGCTT TACAAAATTGAGCCAGTTGCCTGAATTGCTTCTGCAGGCTT < 41bp 0.422048131141971 0.806387062445214 0.13028008 0.16745201 prediction 0.612774124890427 Functional Gain - AP5M1 ENSG00000053770 CDS Human protein_coding chr14:57741366 chr14:57741370 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_101520 0 0 1 0 0 Cytosol 0.500298157425553 0.50023164579407 0 0 hm5C_site_54665 DeepMRMD:0;iRNA_m5C:0 54666 chr1 147090756 147090756 1 + C A HNSC 147090752 + 147090732 147090772 41 TCCACCCATTCCGGCACCAGCACCCAAGCCTGCCGCACCCC TCCACCCATTCCGGCACCAGCACCAAAGCCTGCCGCACCCC < 41bp 0.39874696151079 0.806371736948019 0.34611186 0.3072285 prediction 0.612743473896038 Functional Gain - BCL9 ENSG00000116128 CDS Human protein_coding chr1:147090752 chr1:147090756 synonymous SNV . 0 25 hm5C_associated_SNPs_101521 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_54666 DeepMRMD:0;iRNA_m5C:0 54667 chr10 74658683 74658683 1 + T G UCEC 74658681 + 74658661 74658701 41 CAACGCCAGGCTTGTGCCAGCTTCAATGGGAACTGCTGTCT CAACGCCAGGCTTGTGCCAGCTGCAATGGGAACTGCTGTCT < 41bp 0.520606498068604 0.826964369832973 0.23192099 0.26734167 prediction 0.612715743528739 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74658681 chr10:74658683 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_101522 0 0 0 0 0 Cytosol 0.500231640451882 0.500208170935165 0 0 hm5C_site_54667 DeepMRMD:0;iRNA_m5C:0 54668 chr2 1507739 1507739 1 + C A LUSC 1507735 + 1507715 1507755 41 GGCAGATGTGAACGAGTGTGCAGACGGTGCCCACCCCCCCT GGCAGATGTGAACGAGTGTGCAGAAGGTGCCCACCCCCCCT < 41bp 0.446621147886428 0.806353139820865 0.697536 0.8363071 prediction 0.61270627964173 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1507735 chr2:1507739 nonsynonymous SNV 0.012 1 25 hm5C_associated_SNPs_101523 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.2775422 0 hm5C_site_54668 DeepMRMD:0.2775422;iRNA_m5C:0 54669 chr19 51630383 51630383 1 + C A COAD 51630379 + 51630359 51630399 41 TTGATGCAGTTGACAGCAATCCCCCTGCCAGGCTGAGCCTG TTGATGCAGTTGACAGCAATCCCCATGCCAGGCTGAGCCTG < 41bp 0.395966403720157 0.80634670697389 0.19166458 0.2750852 prediction 0.612693413947779 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51630379 chr19:51630383 nonsynonymous SNV 0.226 3 25 hm5C_associated_SNPs_101524 0 0 0 0 1 exosome 0.500231643921096 0.500231643776415 0 0 hm5C_site_54669 DeepMRMD:0;iRNA_m5C:0 54670 chr7 141618729 141618729 1 + C A UVM 141618725 + 141618705 141618745 41 ATTTTATCTCCTTGGCTTCCCTGGCTCTGAAGAACTACATC ATTTTATCTCCTTGGCTTCCCTGGATCTGAAGAACTACATC < 41bp 0.46561681780407 0.806343756076819 0.10723302 0.19197693 prediction 0.612687512153638 Functional Gain - OR9A4 ENSG00000258083 CDS Human protein_coding chr7:141618725 chr7:141618729 synonymous SNV . 0 25 hm5C_associated_SNPs_101525 0 0 0 0 0 unknown 0.500231737303729 0.500231645750758 0 0 hm5C_site_54670 DeepMRMD:0;iRNA_m5C:0 54671 chr22 26747058 26747058 1 + C A LUAD 26747054 + 26747034 26747074 41 CCCCGGAGAGGTGGATCACTCGACCCGCTTAATTTCGGATC CCCCGGAGAGGTGGATCACTCGACACGCTTAATTTCGGATC < 41bp 0.419448332440625 0.806342270869035 0.34193748 0.48575458 prediction 0.612684541738071 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26747054 chr22:26747058 synonymous SNV . 0 25 hm5C_associated_SNPs_101526 0 0 0 0 1 exosome 0.500231643921092 0.500231643914652 0 0 hm5C_site_54671 DeepMRMD:0;iRNA_m5C:0 54672 chr9 103054773 103054773 1 + C A UCEC 103054769 + 103054749 103054789 41 AGGGGAAAGGCTTCGTGAAGCAGCCCTCCTGTATCAGGGTG AGGGGAAAGGCTTCGTGAAGCAGCACTCCTGTATCAGGGTG < 41bp 0.423767521535026 0.806331168374208 0.10851595 0.14394131 prediction 0.612662336748417 Functional Gain - INVS ENSG00000119509 CDS Human protein_coding chr9:103054769 chr9:103054773 nonsynonymous SNV 0.583 2 25 hm5C_associated_SNPs_101527 0 0 1 0 0 chromatin 0.500231643921092 0.50023164392126 0 3.35953487251572e-13 hm5C_site_54672 DeepMRMD:0;iRNA_m5C:3.35953487251572e-13 54673 chr4 178887872 178887872 1 + C A UCEC 178887868 + 178887848 178887888 41 GGCCCAATCCTGGCTCACTGCAACCTCTGCCTCCTGGGCTC GGCCCAATCCTGGCTCACTGCAACATCTGCCTCCTGGGCTC < 41bp 0.438086534161829 0.80632248762357 0.21046245 0.2128855 prediction 0.612644975247139 Functional Gain - LINC01098 ENSG00000231171 CDS Human lincRNA chr4:178887868 chr4:178887872 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101528 0 0 0 0 1 unknown 0.500231643921092 0.500231644047107 0 2.52029730418712e-10 hm5C_site_54673 DeepMRMD:0;iRNA_m5C:2.52029730418712e-10 54674 chrX 34961333 34961333 1 + C A UCEC 34961329 + 34961309 34961349 41 GTGGAAGCCCAGCTGATGACCAAGCATCCCTTGGCCATGTA GTGGAAGCCCAGCTGATGACCAAGAATCCCTTGGCCATGTA < 41bp 0.57217931649791 0.878487851231977 0.3050015 0.6163871 prediction 0.612617069468134 Functional Gain - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961329 chrX:34961333 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_101529 0 0 0 0 0 unknown 0.500231534331753 0.500255379396775 0.2327742 4.76901300441313e-05 hm5C_site_54674 DeepMRMD:0.2327742;iRNA_m5C:4.76901300441313e-05 54675 chr16 72046117 72046117 1 + C A COAD 72046113 + 72046093 72046133 41 AGACTGGCTGTTCGCTTCACCTCCCTGGGGCTCCTTCCACG AGACTGGCTGTTCGCTTCACCTCCATGGGGCTCCTTCCACG < 41bp 0.60408551674055 0.910393685683479 0.32563323 0.9661863 prediction 0.612616337885859 Functional Gain - DHODH ENSG00000102967 CDS Human protein_coding chr16:72046113 chr16:72046117 nonsynonymous SNV 0.848 2 25 hm5C_associated_SNPs_101530 0 0 1 0 1 Endoplasmic reticulum 0.500231582057659 0.500229082873372 0.9323726 0 hm5C_site_54675 DeepMRMD:0.9323726;iRNA_m5C:0 54676 chr7 148950858 148950858 1 + C A ESCA 148950854 + 148950834 148950874 41 GCCTGTTGGTAGTAGAGTTCCTAGCAGCAGCAGAACTGTGG GCCTGTTGGTAGTAGAGTTCCTAGAAGCAGCAGAACTGTGG < 41bp 0.429489386069966 0.80627575047461 0.03977582 0.19395494 prediction 0.61255150094922 Functional Gain - ZNF212 ENSG00000170260 CDS Human protein_coding chr7:148950854 chr7:148950858 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_101531 0 0 1 0 0 Cytosol 0.500231643923458 0.500231797643232 0 3.07439548263844e-07 hm5C_site_54676 DeepMRMD:0;iRNA_m5C:3.07439548263844e-07 54677 chr17 6913416 6913416 1 + T A LUAD 6913412 + 6913392 6913432 41 GCCTGTCTTCAAATGGCCATCTCATGGCATCTGAGTCGCCG GCCTGTCTTCAAATGGCCATCTCAAGGCATCTGAGTCGCCG < 41bp 0.485697879137518 0.8062606891895 0.32778734 0.26266775 prediction 0.612521378379 Functional Gain - ALOX12 ENSG00000108839;ENSG00000215067 CDS Human other chr17:6913412 chr17:6913416 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_101532 0 0 0 0 1 Cytosol 0.500231643921094 0.500231643921093 0 0 hm5C_site_54677 DeepMRMD:0;iRNA_m5C:0 54678 chr17 73515125 73515125 1 + C A SKCM 73515121 + 73515101 73515141 41 GTTATGTGGTTCGACGATTCCAACCAAGGTAAATCCCCTTC GTTATGTGGTTCGACGATTCCAACAAAGGTAAATCCCCTTC < 41bp 0.394968246968759 0.806259138005229 0.048036873 0.03693059 prediction 0.612518276010457 Functional Gain - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73515121 chr17:73515125 nonsynonymous SNV 0.972 2 25 hm5C_associated_SNPs_101533 0 0 1 0 3 Cytosol 0.500231643921092 0.500231643926254 0 1.03232977721746e-11 hm5C_site_54678 DeepMRMD:0;iRNA_m5C:1.03232977721746e-11 54679 chr16 24920331 24920331 1 + C A UCEC 24920327 + 24920307 24920347 41 GTCCTGGTGAAGAGCATTCACTACCTCTACTTCTCCATGAT GTCCTGGTGAAGAGCATTCACTACATCTACTTCTCCATGAT < 41bp 0.389136334798039 0.806256758462267 0.05625111 0.35659677 prediction 0.612513516924534 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24920327 chr16:24920331 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_101534 0 0 0 0 1 exosome 0.500231643921091 0.50023164392141 0 6.3860028376439e-13 hm5C_site_54679 DeepMRMD:0;iRNA_m5C:6.3860028376439e-13 54680 chr3 44776031 44776031 1 + C A ESCA 44776027 + 44776007 44776047 41 ACTCAGAGATCATCTCTTACCCAGCACCAGAGGATTCACAG ACTCAGAGATCATCTCTTACCCAGAACCAGAGGATTCACAG < 41bp 0.439020913729281 0.806246819339303 0.21374902 0.25021023 prediction 0.612493638678606 Functional Gain - ZNF501 ENSG00000186446 CDS Human protein_coding chr3:44776027 chr3:44776031 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_101535 0 0 0 0 0 Nucleus 0.50023173473877 0.500231791854538 0 1.14231534675824e-07 hm5C_site_54680 DeepMRMD:0;iRNA_m5C:1.14231534675824e-07 54681 chr9 139879436 139879436 1 + C A UCEC 139879432 + 139879412 139879452 41 CCCTCCCTGCCCCTCTCTCCCTCTCTTCGCCCCTCCAGCCC CCCTCCCTGCCCCTCTCTCCCTCTATTCGCCCCTCCAGCCC < 41bp 0.430739572761641 0.806231278391756 0.044650614 0.5507435 prediction 0.612462556783512 Functional Gain - LCNL1 ENSG00000214402 CDS Human protein_coding chr9:139879432 chr9:139879436 synonymous SNV . 0 25 hm5C_associated_SNPs_101536 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.101487 0 hm5C_site_54681 DeepMRMD:0.101487;iRNA_m5C:0 54682 chr6 43972625 43972625 1 + C A rs2273306 43972621 + 43972601 43972641 41 CCCTGAGGGCAGGGCTGTCTCCCCCCTTCAGACTGGGGCCT CCCTGAGGGCAGGGCTGTCTCCCCACTTCAGACTGGGGCCT < 41bp 0.454720968777883 0.806231103497099 0.08981174 0.1583668 prediction 0.612462206994197 Functional Gain - LOC101929705 ENSG00000237686 ncRNA_intronic Human antisense chr6:43972621 chr6:43972625 . . 0 25 hm5C_associated_SNPs_101537 0 0 0 0 0 unknown 0.500231638430957 0.500231643921092 0 1.09802704706397e-08 hm5C_site_54682 DeepMRMD:0;iRNA_m5C:1.09802704706397e-08 54683 chr19 51729073 51729073 1 + C A UCEC 51729069 + 51729049 51729089 41 TCCTCACTAGACTTGACCCACAGGCCCAAAATCCTCATCCC TCCTCACTAGACTTGACCCACAGGACCAAAATCCTCATCCC < 41bp 0.45558432349288 0.806223741126458 0.7879914 0.91816294 prediction 0.612447482252916 Functional Gain - CD33 ENSG00000105383 CDS Human protein_coding chr19:51729069 chr19:51729073 nonsynonymous SNV 0.008 3 25 hm5C_associated_SNPs_101538 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.26034308 0 hm5C_site_54683 DeepMRMD:0.26034308;iRNA_m5C:0 54684 chr12 123892161 123892161 1 + C A LUAD 123892157 + 123892137 123892177 41 CCTCACCTCATCCTCATCGCCTCCCGAGACATCGCGGCTGG CCTCACCTCATCCTCATCGCCTCCAGAGACATCGCGGCTGG < 41bp 0.592123734640236 0.898345765608964 0.26816446 0.9500555 prediction 0.612444061937455 Functional Gain - KMT5A ENSG00000183955 CDS Human protein_coding chr12:123892157 chr12:123892161 synonymous SNV . 0 25 hm5C_associated_SNPs_101539 0 0 1 0 0 Cytosol 0.500231547701593 0.500231682107509 0.900111 2.68811832127014e-07 hm5C_site_54684 DeepMRMD:0.900111;iRNA_m5C:2.68811832127014e-07 54685 chr9 95870005 95870005 1 + C A rs34200537 95870001 + 95869981 95870021 41 GCAGGACACGCCTTTCCTGACAGGCCATGGGCGCTTGAGTG GCAGGACACGCCTTTCCTGACAGGACATGGGCGCTTGAGTG < 41bp 0.578859148655338 0.885079418471851 0.38807636 0.45212406 prediction 0.612440539633026 Functional Gain - CARD19 ENSG00000165233 CDS Human protein_coding chr9:95870001 chr9:95870005 synonymous SNV . 0 25 hm5C_associated_SNPs_101540 0 0 1 0 2 Ribosome 0.500231644021041 0.500231640806313 0 0 hm5C_site_54685 DeepMRMD:0;iRNA_m5C:0 54686 chr5 161495079 161495079 1 + T G LUSC 161495076 + 161495056 161495096 41 TGTATTTTCACAGAAAATGACGGTGTGGATTCTGCTCCTGC TGTATTTTCACAGAAAATGACGGGGTGGATTCTGCTCCTGC < 41bp 0.452110239473374 0.806215402562162 0.8566101 0.926412 prediction 0.612430805124324 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161495076 chr5:161495079 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_101541 0 0 0 0 1 exosome 0.500232022404644 0.50023164392127 0.1396038 0 hm5C_site_54686 DeepMRMD:0.1396038;iRNA_m5C:0 54687 chr6 39016570 39016570 1 + C A rs10305419 39016566 + 39016546 39016586 41 ACCAGCCCGGGATCAGTCTCCGCACGCGGTTCCGCAGGTGG ACCAGCCCGGGATCAGTCTCCGCAAGCGGTTCCGCAGGTGG < 41bp 0.546436914281069 0.852608430152935 0.80680907 0.83721435 prediction 0.612343031743732 Functional Gain - GLP1R ENSG00000112164 upstream Human protein_coding chr6:39016566 chr6:39016570 . . 0 25 hm5C_associated_SNPs_101542 0 0 0 0 0 unknown 0.500231642248382 0.500231643921141 0.06081056 3.34551786274062e-09 hm5C_site_54687 DeepMRMD:0.06081056;iRNA_m5C:3.34551786274062e-09 54688 chr4 77231075 77231075 1 + C A KIRC 77231071 + 77231051 77231091 41 GGTAGAGAATGGGGGAGTTACCCGCTGGGAAGAATGCAGCA GGTAGAGAATGGGGGAGTTACCCGATGGGAAGAATGCAGCA < 41bp 0.58134756737782 0.887507495625219 0.07117 0.47994944 prediction 0.612319856494798 Functional Gain - STBD1 ENSG00000118804 CDS Human protein_coding chr4:77231071 chr4:77231075 synonymous SNV . 0 25 hm5C_associated_SNPs_101543 0 0 0 0 0 exosome 0.500231643920818 0.50023164380646 0 0 hm5C_site_54688 DeepMRMD:0;iRNA_m5C:0 54689 chr4 3494500 3494500 1 + C A COAD 3494496 + 3494476 3494516 41 TCTGTCTCAGGGGATGACCGCAGCCTGTCCAGCTCATCCTC TCTGTCTCAGGGGATGACCGCAGCATGTCCAGCTCATCCTC < 41bp 0.426085256378271 0.806140639309479 0.6684319 0.89111763 prediction 0.612281278618958 Functional Gain - DOK7 ENSG00000175920 CDS Human protein_coding chr4:3494496 chr4:3494500 nonsynonymous SNV 0.899 0 25 hm5C_associated_SNPs_101544 0 0 0 0 1 nucleus 0.500231057777408 0.500234642108112 0.44537146 7.16866140781924e-06 hm5C_site_54689 DeepMRMD:0.44537146;iRNA_m5C:7.16866140781924e-06 54690 chr5 179018717 179018717 1 + T A LIHC 179018713 + 179018693 179018733 41 TGTACAGTGATGTGTGGAAGCAGCTAAAAGAGGAGAAGAAA TGTACAGTGATGTGTGGAAGCAGCAAAAAGAGGAGAAGAAA < 41bp 0.497797249625955 0.806121283548424 0.8792466 0.43274826 prediction 0.612242567096847 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179018713 chr5:179018717 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_101545 0 0 1 0 2 Ribosome 0.500231643888222 0.500231643902526 0 2.86086709877509e-11 hm5C_site_54690 DeepMRMD:0;iRNA_m5C:2.86086709877509e-11 54691 chr4 86491812 86491812 1 + T G LUAD 86491809 + 86491789 86491829 41 TTGTCAAGACTTGGCATACTCGCTGGTTTGTGCTCAAGGGG TTGTCAAGACTTGGCATACTCGCGGGTTTGTGCTCAAGGGG < 41bp 0.540554785720696 0.846672487299637 0.0680809 0.8788959 prediction 0.612235403157882 Functional Gain - ARHGAP24 ENSG00000138639 CDS Human protein_coding chr4:86491809 chr4:86491812 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_101546 0 0 0 0 1 Cytosol 0.500231731725853 0.500231643920711 0.7577918 0 hm5C_site_54691 DeepMRMD:0.7577918;iRNA_m5C:0 54692 chr16 55362842 55362842 1 + T A rs61743419 55362838 + 55362818 55362858 41 GGCCTGGCTGCGCCCCGCTTCTCCTTCAATGACCCTTCCGG GGCCTGGCTGCGCCCCGCTTCTCCATCAATGACCCTTCCGG < 41bp 0.486128321333708 0.806106592758411 0.18442905 0.95170486 prediction 0.612213185516822 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55362838 chr16:55362842 nonsynonymous SNV 0.030 1 25 hm5C_associated_SNPs_101547 0 0 0 0 0 exosome 0.500231643921154 0.500231643921274 0.90340972 2.40030217923959e-13 hm5C_site_54692 DeepMRMD:0.90340972;iRNA_m5C:2.40030217923959e-13 54693 chr13 31231786 31231786 1 + T G READ 31231783 + 31231763 31231803 41 ACTAATGACCAACACGCTCTCAGTAATGAGAAACCAGTATC ACTAATGACCAACACGCTCTCAGGAATGAGAAACCAGTATC < 41bp 0.473340185321897 0.806106336225012 0.19801724 0.9056237 prediction 0.612212672450023 Functional Gain - USPL1 ENSG00000132952 CDS Human protein_coding chr13:31231783 chr13:31231786 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_101548 0 0 1 0 0 Cytosol 0.500231643924331 0.500231643922018 0.8112474 0 hm5C_site_54693 DeepMRMD:0.8112474;iRNA_m5C:0 54694 chr14 23511731 23511731 1 + C A LUAD 23511727 + 23511707 23511747 41 GGGTACCACCTCTGGCACCTCTGCCGACTGTGCTACCTGGT GGGTACCACCTCTGGCACCTCTGCAGACTGTGCTACCTGGT < 41bp 0.583953723020335 0.890044861577929 0.2993071 0.6288905 prediction 0.612182277115187 Functional Gain - PSMB11 ENSG00000222028 CDS Human protein_coding chr14:23511727 chr14:23511731 synonymous SNV . 0 25 hm5C_associated_SNPs_101549 0 0 0 0 0 exosome 0.500231640190589 0.500234912065939 0.257781 6.54375069975011e-06 hm5C_site_54694 DeepMRMD:0.257781;iRNA_m5C:6.54375069975011e-06 54695 chr4 30724143 30724143 1 + C A LUSC 30724139 + 30724119 30724159 41 CGCCTTGACGAGACGTCCGGCTGGCTCAGCGTCCTGCACCG CGCCTTGACGAGACGTCCGGCTGGATCAGCGTCCTGCACCG < 41bp 0.442254043314978 0.806078675068176 0.22414777 0.41355175 prediction 0.612157350136352 Functional Gain - PCDH7 ENSG00000169851 CDS Human protein_coding chr4:30724139 chr4:30724143 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_101550 0 0 1 0 0 Ribosome 0.500231643917238 0.500231650422634 0 1.30107937756918e-08 hm5C_site_54695 DeepMRMD:0;iRNA_m5C:1.30107937756918e-08 54696 chr3 186571989 186571989 1 + G T UCEC 186571993 - 186571973 186572013 41 TACTCCGGTTTCACCGATGTCTCCCTTAGGACCAATAAGAC TACTCCGGTTTCACCGATGTCTCCATTAGGACCAATAAGAC < 41bp 0.408496657430951 0.806072371567632 0.009301245 0.9576913 prediction 0.612144743135264 Functional Gain - ADIPOQ ENSG00000181092 CDS Human protein_coding chr3:186571993 chr3:186571989 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_101551 0 0 0 0 1 exosome 0.500231643921092 0.500231643921088 0.9153826 0 hm5C_site_54696 DeepMRMD:0.9153826;iRNA_m5C:0 54697 chrX 41333824 41333824 1 + T G UCEC 41333822 + 41333802 41333842 41 GGCTCCGTGGCCGGCCTGGACCTCAGCCAGGTGACCTTCGG GGCTCCGTGGCCGGCCTGGACCGCAGCCAGGTGACCTTCGG < 41bp 0.523731066679462 0.829783569288558 0.20164332 0.6344539 prediction 0.612105005218192 Functional Gain - NYX ENSG00000188937 CDS Human protein_coding chrX:41333822 chrX:41333824 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_101552 0 0 0 0 0 unknown 0.500231643921093 0.500231643898807 0.2689078 0 hm5C_site_54697 DeepMRMD:0.2689078;iRNA_m5C:0 54698 chr13 45952672 45952672 1 + T G rs199665813 45952669 + 45952649 45952689 41 TGCCTTCTGCCCTTAGGCTCCGGTAGATTGCAAATGACCTG TGCCTTCTGCCCTTAGGCTCCGGGAGATTGCAAATGACCTG < 41bp 0.465594873429631 0.806052120577375 0.306157 0.7372124 prediction 0.61210424115475 Functional Gain - TPT1-AS1 ENSG00000170919 ncRNA_exonic Human processed_transcript chr13:45952669 chr13:45952672 . . 0 24 hm5C_associated_SNPs_101553 0 0 1 0 1 unknown 0.5002316439211 0.500231643921092 0.4744248 0 hm5C_site_54698 DeepMRMD:0.4744248;iRNA_m5C:0 54699 chr21 46058061 46058061 1 + C A UCEC 46058057 + 46058037 46058077 41 TGCTCCCGCCCTGCCTGCTACAGCCTCTGCTCTGGCCAGAA TGCTCCCGCCCTGCCTGCTACAGCATCTGCTCTGGCCAGAA < 41bp 0.436391107654957 0.806029767420241 0.18017736 0.2587244 prediction 0.612059534840482 Functional Gain - KRTAP10-10 ENSG00000221859 CDS Human protein_coding chr21:46058057 chr21:46058061 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_101554 0 0 0 0 0 unknown 0.500231643921091 0.500231643921093 0 3.99680288865056e-15 hm5C_site_54699 DeepMRMD:0;iRNA_m5C:3.99680288865056e-15 54700 chr1 21762585 21762585 1 + C A rs188127427 21762581 + 21762561 21762601 41 AATCCCTGTGGCTACAGGAGCAGGCGGCCCTGGAGACAGAG AATCCCTGTGGCTACAGGAGCAGGAGGCCCTGGAGACAGAG < 41bp 0.485791830901029 0.806022007793705 0.92631567 0.9237658 prediction 0.61204401558741 Functional Gain - ECE1;NBPF3 ENSG00000186543 ncRNA_exonic Human unprocessed_pseudogene chr1:21762581 chr1:21762585 . . 0 25 hm5C_associated_SNPs_101555 0 0 0 0 1 unknown 0.500231548115558 0.500231643903919 0 1.91576721597642e-07 hm5C_site_54700 DeepMRMD:0;iRNA_m5C:1.91576721597642e-07 54701 chr6 47775993 47775993 1 + T A LGG 47775989 + 47775969 47776009 41 GGCCAGACTCCATTCCCATACAGCTCTCTGTGGTGCCAACC GGCCAGACTCCATTCCCATACAGCACTCTGTGGTGCCAACC < 41bp 0.491616854500177 0.806020188436537 0.025692582 0.030235797 prediction 0.612040376873074 Functional Gain - OPN5 ENSG00000124818 CDS Human protein_coding chr6:47775989 chr6:47775993 nonsynonymous SNV 0.991 3 25 hm5C_associated_SNPs_101556 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54701 DeepMRMD:0;iRNA_m5C:0 54702 chr5 3599553 3599553 1 + C A LUSC 3599549 + 3599529 3599569 41 CCAAGGGCGAGAAGATCATGCTGGCCATCATCACCAAGATG CCAAGGGCGAGAAGATCATGCTGGACATCATCACCAAGATG < 41bp 0.41990280888788 0.80597940231432 0.12078071 0.12842411 prediction 0.61195880462864 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3599549 chr5:3599553 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_101557 0 0 0 0 0 exosome 0.500231643935633 0.500231666818692 0 4.57661182284852e-08 hm5C_site_54702 DeepMRMD:0;iRNA_m5C:4.57661182284852e-08 54703 chr4 2877668 2877668 1 + T G LUSC 2877665 + 2877645 2877685 41 GAATGGTGATTCTCGTGCTGCGGTGGTGACCTCACCACCCC GAATGGTGATTCTCGTGCTGCGGGGGTGACCTCACCACCCC < 41bp 0.451403251276171 0.805944303549838 0.5425929 0.92714626 prediction 0.611888607099676 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2877665 chr4:2877668 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_101558 0 0 1 0 1 Ribosome 0.500231644472295 0.500236791456646 0.76910672 1.02939687021131e-05 hm5C_site_54703 DeepMRMD:0.76910672;iRNA_m5C:1.02939687021131e-05 54704 chr2 98996660 98996660 1 + C A rs575326068 98996656 + 98996636 98996676 41 AGGCTGTCGCGCCTCATCTTCTTGCTGCGCAGGTGGGCTGC AGGCTGTCGCGCCTCATCTTCTTGATGCGCAGGTGGGCTGC < 41bp 0.409551784114892 0.805926364706475 0.16327631 0.32633197 prediction 0.611852729412949 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98996656 chr2:98996660 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_101559 0 0 0 0 1 nucleus 0.500224553891321 0.500231632371184 0 1.41569597258417e-05 hm5C_site_54704 DeepMRMD:0;iRNA_m5C:1.41569597258417e-05 54705 chr17 64876776 64876776 1 + T G LUAD 64876773 + 64876753 64876793 41 ACACATCCGTCCCCACCGGACGATACTGGCCTTTGTCTCTG ACACATCCGTCCCCACCGGACGAGACTGGCCTTTGTCTCTG < 41bp 0.432946529770167 0.805903519411781 0.12640044 0.2616573 prediction 0.611807038823562 Functional Gain - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64876773 chr17:64876776 nonsynonymous SNV 0.942 2 24 hm5C_associated_SNPs_101560 0 0 0 0 1 unknown 0.500231643921002 0.500231643920856 0 0 hm5C_site_54705 DeepMRMD:0;iRNA_m5C:0 54706 chr17 56247733 56247733 1 + C A UCEC 56247729 + 56247709 56247749 41 GGCAAGAAGGAAGGCAGCTTCCACCTGCACCACCCACATCA GGCAAGAAGGAAGGCAGCTTCCACATGCACCACCCACATCA < 41bp 0.427614233124769 0.805839694693491 0.066684544 0.43152502 prediction 0.611679389386981 Functional Gain - OR4D2 ENSG00000255713 CDS Human protein_coding chr17:56247729 chr17:56247733 synonymous SNV . 0 25 hm5C_associated_SNPs_101561 0 0 0 0 0 unknown 0.500231643921092 0.500231707146857 0 1.26451529469662e-07 hm5C_site_54706 DeepMRMD:0;iRNA_m5C:1.26451529469662e-07 54707 chr17 20884979 20884979 1 + C A UCEC 20884975 + 20884955 20884995 41 AGCCCAGGGGACAGTGTGATCACCCCCAACGCCTGTCCCCA AGCCCAGGGGACAGTGTGATCACCACCAACGCCTGTCCCCA < 41bp 0.468428210149696 0.805834825791461 0.06978622 0.09174886 prediction 0.611669651582922 Functional Gain - LOC339260 ENSG00000264660 ncRNA_exonic Human antisense chr17:20884975 chr17:20884979 . . 0 25 hm5C_associated_SNPs_101562 0 0 0 0 0 unknown 0.500231643920987 0.500231643927197 0 1.24200649764816e-11 hm5C_site_54707 DeepMRMD:0;iRNA_m5C:1.24200649764816e-11 54708 chr14 102680312 102680312 1 + C A rs142602935 102680308 + 102680288 102680328 41 CGATTCATGGAACACAGCGTCTGGCGTCCAGCTTTGTGGGT CGATTCATGGAACACAGCGTCTGGAGTCCAGCTTTGTGGGT < 41bp 0.551922062277451 0.857744718925614 0.6907436 0.59861284 prediction 0.611645313296326 Functional Gain - WDR20 ENSG00000140153 UTR3 Human protein_coding chr14:102680308 chr14:102680312 . . 0 25 hm5C_associated_SNPs_101563 0 0 1 0 0 Cytosol 0.500231651567159 0.500231685688718 0 6.82431176013409e-08 hm5C_site_54708 DeepMRMD:0;iRNA_m5C:6.82431176013409e-08 54709 chr1 202096944 202096944 1 + C A STAD 202096940 + 202096920 202096960 41 CGCTTCCACGTGGCCACCAGCACCCTGCCCAAGGTGAGGCC CGCTTCCACGTGGCCACCAGCACCATGCCCAAGGTGAGGCC < 41bp 0.40176930159238 0.805818559406007 0.26311362 0.35515633 prediction 0.611637118812014 Functional Gain - GPR37L1 ENSG00000170075 CDS Human protein_coding chr1:202096940 chr1:202096944 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_101564 0 0 0 0 1 Nucleus 0.500231599502811 0.500231643919183 0 8.88327449377613e-08 hm5C_site_54709 DeepMRMD:0;iRNA_m5C:8.88327449377613e-08 54710 chr11 93862493 93862493 1 + A C rs1138800 93862496 - 93862476 93862516 41 GAGAACACGTACTCCGTGGCCAGTTGAGCGATGGCCATGGC GAGAACACGTACTCCGTGGCCAGGTGAGCGATGGCCATGGC < 41bp 0.564144752023535 0.869948744618218 0.88993335 0.9308405 prediction 0.611607985189367 Functional Gain - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93862496 chr11:93862493 nonsynonymous SNV 0.995 0 24 hm5C_associated_SNPs_101565 0 0 0 0 0 Endoplasmic reticulum 0.500286747719706 0.500807228864339 0.0818143 0.00104096228926642 hm5C_site_54710 DeepMRMD:0.0818143;iRNA_m5C:0.00104096228926642 54711 chr11 55944796 55944796 1 + C A LUSC 55944792 + 55944772 55944812 41 AGGATCCACTCAGCATCAGGCAGACAGCAAGCCTTCTCCAC AGGATCCACTCAGCATCAGGCAGAAAGCAAGCCTTCTCCAC < 41bp 0.570664237953337 0.876459433905974 0.14268836 0.10733521 prediction 0.611590391905273 Functional Gain - OR5J2 ENSG00000174957 CDS Human protein_coding chr11:55944792 chr11:55944796 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_101566 0 0 0 0 0 unknown 0.500231551183564 0.500231643625268 0 1.84883406584291e-07 hm5C_site_54711 DeepMRMD:0;iRNA_m5C:1.84883406584291e-07 54712 chr19 36034660 36034660 1 + C A LUAD 36034656 + 36034636 36034676 41 CGCCCAGCCTGCCCCCTACTCAGCCATCAAGGAGGCTGTAA CGCCCAGCCTGCCCCCTACTCAGCAATCAAGGAGGCTGTAA < 41bp 0.596895710543188 0.902679738734284 0.41405287 0.32950485 prediction 0.611568056382191 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36034656 chr19:36034660 synonymous SNV . 0 25 hm5C_associated_SNPs_101567 0 0 0 0 2 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_54712 DeepMRMD:0;iRNA_m5C:0 54713 chr15 25477442 25477442 1 + C A LUAD 25477438 + 25477418 25477458 41 GCCCCCGATGCGCTGAAGCTCAAGCCTTTCCTGGCACCCTG GCCCCCGATGCGCTGAAGCTCAAGACTTTCCTGGCACCCTG < 41bp 0.515624497625685 0.821384262553983 0.859258 0.8778834 prediction 0.611519529856596 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25477438 chr15:25477442 . . 0 25 hm5C_associated_SNPs_101568 0 0 0 0 2 unknown 0.500231643921093 0.500231643921092 0.0372508 0 hm5C_site_54713 DeepMRMD:0.0372508;iRNA_m5C:0 54714 chr9 407023 407023 1 + C A GBM 407019 + 406999 407039 41 CGCCAGCAGCACTTCCTCACCGGGCTCCTCTTCACAGAACT CGCCAGCAGCACTTCCTCACCGGGATCCTCTTCACAGAACT < 41bp 0.441457073010757 0.805755528870977 0.8167193 0.76246727 prediction 0.611511057741955 Functional Gain - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:407019 chr9:407023 nonsynonymous SNV 0.392 2 25 hm5C_associated_SNPs_101569 0 0 0 0 1 Cytosol 0.50026200225284 0.500295502924076 0 6.70013424723948e-05 hm5C_site_54714 DeepMRMD:0;iRNA_m5C:6.70013424723948e-05 54715 chr14 21359969 21359969 1 + C A BLCA 21359965 + 21359945 21359985 41 AGGGCTCAGTGGTTTGCCATCCAGCACATCAGTCTGAACCC AGGGCTCAGTGGTTTGCCATCCAGAACATCAGTCTGAACCC < 41bp 0.574083758668283 0.879835880340641 0.2872467 0.53105885 prediction 0.611504243344716 Functional Gain - RNASE3 ENSG00000169397 CDS Human protein_coding chr14:21359965 chr14:21359969 nonsynonymous SNV 0.042 3 25 hm5C_associated_SNPs_101570 0 0 0 0 0 exosome 0.500231644051275 0.500231643921093 0.0621176999999999 0 hm5C_site_54715 DeepMRMD:0.0621176999999999;iRNA_m5C:0 54716 chr19 55098804 55098804 1 + C A LUAD 55098800 + 55098780 55098820 41 CCAGAGAAGCCTACAAGATGCAGCCGGGAGGTGAACAGCAG CCAGAGAAGCCTACAAGATGCAGCAGGGAGGTGAACAGCAG < 41bp 0.564106774039737 0.869812141213177 0.29461136 0.43796557 prediction 0.611410734346879 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55098800 chr19:55098804 synonymous SNV . 0 25 hm5C_associated_SNPs_101571 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_54716 DeepMRMD:0;iRNA_m5C:0 54717 chr15 25492365 25492365 1 + C A LUSC 25492361 + 25492341 25492381 41 GTTCCTGGGCCAGTGGCCATCAGCCTGTTGCCCAGCCCCTG GTTCCTGGGCCAGTGGCCATCAGCATGTTGCCCAGCCCCTG < 41bp 0.526660745465269 0.832361894986888 0.70977473 0.8030814 prediction 0.611402299043237 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25492361 chr15:25492365 . . 0 25 hm5C_associated_SNPs_101572 0 0 0 0 2 unknown 0.500231643921092 0.5002316439261 0.18661334 1.00155439497485e-11 hm5C_site_54717 DeepMRMD:0.18661334;iRNA_m5C:1.00155439497485e-11 54718 chr8 53852687 53852687 1 + C A LGG 53852683 + 53852663 53852703 41 CCCCGCATGAAGACCGTCACCAACCTGTTCATCCTCAACCT CCCCGCATGAAGACCGTCACCAACATGTTCATCCTCAACCT < 41bp 0.569966943801648 0.87565646599507 0.06592575 0.03944856 prediction 0.611379044386844 Functional Gain - NPBWR1 ENSG00000183729 CDS Human protein_coding chr8:53852683 chr8:53852687 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_101573 0 0 0 0 0 exosome 0.500231501104647 0.500231643922412 0 2.8563553011729e-07 hm5C_site_54718 DeepMRMD:0;iRNA_m5C:2.8563553011729e-07 54719 chr19 37266929 37266929 1 + C A rs1227808 37266925 + 37266905 37266945 41 CTTTCTCGTCGCTGCGCCTGCTCGCTGAAGGAGTCACCTAC CTTTCTCGTCGCTGCGCCTGCTCGATGAAGGAGTCACCTAC < 41bp 0.576362790958362 0.882039387158054 0.35006186 0.6739191 prediction 0.611353192399384 Functional Gain - LOC728485 ENSG00000267260 UTR3 Human lincRNA chr19:37266925 chr19:37266929 . . 0 25 hm5C_associated_SNPs_101574 0 0 1 0 0 unknown 0.500231624450878 0.500163992505489 0.3478382 0 hm5C_site_54719 DeepMRMD:0.3478382;iRNA_m5C:0 54720 chr8 22436918 22436918 1 + C A rs538285975 22436914 + 22436894 22436934 41 CGGCCGGAGCGCTCCTCCTCCAGCCCCCAGCCCGCAGGGTA CGGCCGGAGCGCTCCTCCTCCAGCACCCAGCCCGCAGGGTA < 41bp 0.44683353271291 0.805657833006652 0.5988868 0.3717404 prediction 0.611315666013303 Functional Gain - PDLIM2 ENSG00000120913 CDS Human protein_coding chr8:22436914 chr8:22436918 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_101575 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_54720 DeepMRMD:0;iRNA_m5C:0 54721 chr11 18195132 18195132 1 + T G UCEC 18195130 + 18195110 18195150 41 ACCTTTCCCTACTTTACAGGCCTGAGTATGCTGAGCGCCAT ACCTTTCCCTACTTTACAGGCCGGAGTATGCTGAGCGCCAT < 41bp 0.482241302589085 0.805654715821716 0.05973786 0.30758816 prediction 0.611309431643431 Functional Gain - MRGPRX4 ENSG00000179817 CDS Human protein_coding chr11:18195130 chr11:18195132 nonsynonymous SNV 0.014 3 23 hm5C_associated_SNPs_101576 0 0 0 0 0 unknown 0.500231643921108 0.500231643921634 0 1.05182529352987e-12 hm5C_site_54721 DeepMRMD:0;iRNA_m5C:1.05182529352987e-12 54722 chr7 6194153 6194153 1 + C A rs569864999 6194149 + 6194129 6194169 41 CGCACCTGCCCCCGGGAGCGCGACCGCCAGGACCGCCACGC CGCACCTGCCCCCGGGAGCGCGACAGCCAGGACCGCCACGC < 41bp 0.431594290759824 0.805647534401741 0.9235935 0.92625856 prediction 0.611295068803483 Functional Gain - USP42 ENSG00000106346 CDS Human protein_coding chr7:6194149 chr7:6194153 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_101577 0 0 1 0 0 Ribosome 0.500231644023242 0.500231643921093 0.00533011999999999 0 hm5C_site_54722 DeepMRMD:0.00533011999999999;iRNA_m5C:0 54723 chr5 139201548 139201548 1 + C A SARC 139201544 + 139201524 139201564 41 GAGCGGGTCCTCACACACTTCTCCCGCCGGTACTGCCAGTG GAGCGGGTCCTCACACACTTCTCCAGCCGGTACTGCCAGTG < 41bp 0.36938453460765 0.805646700355 0.05566305 0.9115047 prediction 0.611293400709999 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139201544 chr5:139201548 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101578 0 0 0 0 2 exosome 0.500231244318489 0.500232657598668 0.8230094 2.82656035888174e-06 hm5C_site_54723 DeepMRMD:0.8230094;iRNA_m5C:2.82656035888174e-06 54724 chr1 11769511 11769511 1 + C A UCEC 11769507 + 11769487 11769527 41 TCCCTGATCCTGCCCGTCACCTCCCTGCGGCCCCAGGTAAG TCCCTGATCCTGCCCGTCACCTCCATGCGGCCCCAGGTAAG < 41bp 0.384892287155141 0.805642542104951 0.116737306 0.95285654 prediction 0.611285084209901 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11769507 chr1:11769511 nonsynonymous SNV 0.316 2 25 hm5C_associated_SNPs_101579 0 0 0 0 1 exosome 0.500231643363907 0.500231643911295 0.90571308 1.09477471532671e-09 hm5C_site_54724 DeepMRMD:0.90571308;iRNA_m5C:1.09477471532671e-09 54725 chr3 142840693 142840693 1 + C A COAD 142840689 + 142840669 142840709 41 GGCGAGTTCACGGATCCGCTCGCGCCACGGCCTCATCCGTG GGCGAGTTCACGGATCCGCTCGCGACACGGCCTCATCCGTG < 41bp 0.585934862543316 0.891565545500646 0.40736413 0.91244256 prediction 0.611261365914661 Functional Gain - CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840689 chr3:142840693 synonymous SNV . 0 25 hm5C_associated_SNPs_101580 0 0 0 0 0 cytosol 0.500231643010819 0.50023164392092 0.82488512 1.82020154504414e-09 hm5C_site_54725 DeepMRMD:0.82488512;iRNA_m5C:1.82020154504414e-09 54726 chr12 29423485 29423485 1 + C A UCEC 29423481 + 29423461 29423501 41 ATGGAGAAGCTGTTTCGCACCAGCCCAGACCTGAAAGTCAT ATGGAGAAGCTGTTTCGCACCAGCACAGACCTGAAAGTCAT < 41bp 0.415437486665473 0.805620867021721 0.18748492 0.14679772 prediction 0.611241734043442 Functional Gain - FAR2 ENSG00000064763 CDS Human protein_coding chr12:29423481 chr12:29423485 nonsynonymous SNV 0.746 4 25 hm5C_associated_SNPs_101581 0 0 0 0 1 Cytosol 0.500231643951007 0.500231643562957 0 0 hm5C_site_54726 DeepMRMD:0;iRNA_m5C:0 54727 chr12 57943874 57943874 1 + C A rs566707896 57943870 + 57943850 57943890 41 CCCAGGTCGCCCGCATCCCGCTGCCGCAGGAGAGAGACAGC CCCAGGTCGCCCGCATCCCGCTGCAGCAGGAGAGAGACAGC < 41bp 0.462883543902175 0.805576351784684 0.342722 0.31614047 prediction 0.611152703569368 Functional Gain - KIF5A ENSG00000155980 UTR5 Human protein_coding chr12:57943870 chr12:57943874 . . 0 25 hm5C_associated_SNPs_101582 0 0 1 0 0 Cytosol 0.500231643921026 0.50023144377512 0 0 hm5C_site_54727 DeepMRMD:0;iRNA_m5C:0 54728 chr19 30935925 30935925 1 + C A GBM 30935921 + 30935901 30935941 41 CACGGCGTCCCGGAGGGGGACAAGCACTCCCTCCTGGGATG CACGGCGTCCCGGAGGGGGACAAGAACTCCCTCCTGGGATG < 41bp 0.418030402133127 0.805528716916518 0.4627257 0.79580194 prediction 0.611057433833035 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935921 chr19:30935925 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101583 0 0 1 0 0 exosome 0.50023164392807 0.500231644002161 0.59160388 1.48180800962905e-10 hm5C_site_54728 DeepMRMD:0.59160388;iRNA_m5C:1.48180800962905e-10 54729 chr16 30095042 30095042 1 + C A SKCM 30095038 + 30095018 30095058 41 CTGGATCAGATTCGGACAATCGACCGAAAGCAAGAGGTGCC CTGGATCAGATTCGGACAATCGACAGAAAGCAAGAGGTGCC < 41bp 0.593391804244331 0.898916024512363 0.29023218 0.40809506 prediction 0.611048440536065 Functional Gain - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30095038 chr16:30095042 synonymous SNV . 0 25 hm5C_associated_SNPs_101584 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921126 0 6.61692922676593e-14 hm5C_site_54729 DeepMRMD:0;iRNA_m5C:6.61692922676593e-14 54730 chr19 50302705 50302705 1 + C A UCEC 50302701 + 50302681 50302721 41 ACGCTGGCCAGCTCCGAGTTCTCCCATGAAGCCGTCAAGAC ACGCTGGCCAGCTCCGAGTTCTCCAATGAAGCCGTCAAGAC < 41bp 0.370797527426548 0.805523678252546 0.049157858 0.9671363 prediction 0.611047356505092 Functional Gain - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302701 chr19:50302705 nonsynonymous SNV 0.967 3 25 hm5C_associated_SNPs_101585 0 0 1 0 1 Ribosome 0.500231309557938 0.500233161925645 0.9342726 3.70473541488892e-06 hm5C_site_54730 DeepMRMD:0.9342726;iRNA_m5C:3.70473541488892e-06 54731 chr10 124057314 124057314 1 + C A UCEC 124057310 + 124057290 124057330 41 GATGTGATGATAGCCAGACTCAAGCCAAGCACCATCAAGAA GATGTGATGATAGCCAGACTCAAGACAAGCACCATCAAGAA < 41bp 0.590180657228053 0.895703823760872 0.07606432 0.12942767 prediction 0.611046333065638 Functional Gain - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124057310 chr10:124057314 nonsynonymous SNV 0.088 1 25 hm5C_associated_SNPs_101586 0 0 0 0 2 cytosol 0.500231643923478 0.500231643941547 0 3.61393137637833e-11 hm5C_site_54731 DeepMRMD:0;iRNA_m5C:3.61393137637833e-11 54732 chr2 242157251 242157251 1 + T G LUSC 242157249 + 242157229 242157269 41 GTGGCCGAGCGCGCCCAGGACATCGGCATCTGGTTCCACAT GTGGCCGAGCGCGCCCAGGACAGCGGCATCTGGTTCCACAT < 41bp 0.467746483114714 0.805457145617965 0.40223414 0.7257672 prediction 0.610914291235929 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242157249 chr2:242157251 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_101587 0 0 0 0 1 chromatin 0.500231643921102 0.500231643921092 0.4515344 0 hm5C_site_54732 DeepMRMD:0.4515344;iRNA_m5C:0 54733 chr11 4615410 4615410 1 + C A KIRC 4615406 + 4615386 4615426 41 ATCACAGCCCTGTTAGGAAACACCCTCATCGTGACTGCAAT ATCACAGCCCTGTTAGGAAACACCATCATCGTGACTGCAAT < 41bp 0.425164161733203 0.805397939013854 0.035525173 0.085769266 prediction 0.610795878027708 Functional Gain - OR52I1 ENSG00000232268 CDS Human protein_coding chr11:4615406 chr11:4615410 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_101588 0 0 0 0 0 unknown 0.500231509065267 0.500230625777911 0 0 hm5C_site_54733 DeepMRMD:0;iRNA_m5C:0 54734 chr19 51986564 51986564 1 + C A ESCA 51986560 + 51986540 51986580 41 GCCCCCCATGAGTGCAGCAGCTCCCCTCCAGGCTCATGCTT GCCCCCCATGAGTGCAGCAGCTCCACTCCAGGCTCATGCTT < 41bp 0.409237071075001 0.805334718705705 0.09153119 0.70148385 prediction 0.61066943741141 Functional Gain - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51986560 chr19:51986564 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101589 0 0 0 0 0 unknown 0.500231644273908 0.500231610248598 0.4029677 0 hm5C_site_54734 DeepMRMD:0.4029677;iRNA_m5C:0 54735 chr16 30533555 30533555 1 + T G rs369306839 30533553 + 30533533 30533573 41 TCCCCAGCCTCTTCTAGAGCCGTGATGCCTCCCTGTTGAAG TCCCCAGCCTCTTCTAGAGCCGGGATGCCTCCCTGTTGAAG < 41bp 0.508878267967902 0.814194609584079 0.19395599 0.9263611 prediction 0.610632683232354 Functional Gain - ITGAL ENSG00000005844 UTR3 Human protein_coding chr16:30533553 chr16:30533555 . . 0 23 hm5C_associated_SNPs_101590 0 0 0 1 0 Cytosol 0.50023165064848 0.500231643921092 0.8527222 0 hm5C_site_54735 DeepMRMD:0.8527222;iRNA_m5C:0 54736 chr19 9492421 9492421 1 + C A LIHC 9492417 + 9492397 9492437 41 AGCACTAACCTTATAATGCACAAGCGAATCCACAATGGCCA AGCACTAACCTTATAATGCACAAGAGAATCCACAATGGCCA < 41bp 0.455563158334603 0.805306738130498 0.22567344 0.29958278 prediction 0.610613476260996 Functional Gain - ZNF177;ZNF559-ZNF177 ENSG00000188629;ENSG00000270011 CDS Human other chr19:9492417 chr19:9492421 synonymous SNV . 0 25 hm5C_associated_SNPs_101591 0 0 0 0 0 unknown 0.500231643923535 0.500231645036259 0 2.22544849215467e-09 hm5C_site_54736 DeepMRMD:0;iRNA_m5C:2.22544849215467e-09 54737 chr6 348878 348878 1 + C A LUSC 348874 + 348854 348894 41 AGCAAGGGCGCACAGAGCCCCAGCCCGGCGCCAGGCGGTGG AGCAAGGGCGCACAGAGCCCCAGCACGGCGCCAGGCGGTGG < 41bp 0.419831505572693 0.805296920931402 0.12014654 0.14765537 prediction 0.610593841862805 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348874 chr6:348878 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_101592 0 0 1 0 0 Ribosome 0.500231643920821 0.500240931687382 0 1.85755331227888e-05 hm5C_site_54737 DeepMRMD:0;iRNA_m5C:1.85755331227888e-05 54738 chr19 15053150 15053150 1 + C A LUSC 15053146 + 15053126 15053166 41 ATGTACACCATGGTCACCCCCATGCTGAACCCCTTCATCTA ATGTACACCATGGTCACCCCCATGATGAACCCCTTCATCTA < 41bp 0.431192991947026 0.805279930271043 0.016574264 0.025821358 prediction 0.610559860542085 Functional Gain - OR7C2 ENSG00000127529 CDS Human protein_coding chr19:15053146 chr19:15053150 nonsynonymous SNV 0.984 1 25 hm5C_associated_SNPs_101593 0 0 0 0 0 exosome 0.500231643906471 0.500231642550024 0 0 hm5C_site_54738 DeepMRMD:0;iRNA_m5C:0 54739 chr7 27285699 27285699 1 + C A STAD 27285695 + 27285675 27285715 41 GGGCCTGGGCGCCGCATCCGCCGCCTCCGCCGCCGCCTCGC GGGCCTGGGCGCCGCATCCGCCGCATCCGCCGCCGCCTCGC < 41bp 0.570702243551767 0.875980250270167 0.74402726 0.6215999 prediction 0.610556013436802 Functional Gain - EVX1 ENSG00000106038 CDS Human protein_coding chr7:27285695 chr7:27285699 synonymous SNV . 0 25 hm5C_associated_SNPs_101594 0 0 0 0 0 unknown 0.500231643921092 0.500231643933655 0 2.51267895379215e-11 hm5C_site_54739 DeepMRMD:0;iRNA_m5C:2.51267895379215e-11 54740 chr15 76630195 76630195 1 + C A LUSC 76630191 + 76630171 76630211 41 GTTTATCCTGCGGGTGTCGCCCGACCTCGAGTGGCACGCGG GTTTATCCTGCGGGTGTCGCCCGAACTCGAGTGGCACGCGG < 41bp 0.438402947113194 0.805273699090182 0.7644062 0.6409365 prediction 0.610547398180365 Functional Gain - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630191 chr15:76630195 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_101595 0 0 1 0 1 Cytosol 0.500231495237806 0.50023164396571 0 2.97455807762859e-07 hm5C_site_54740 DeepMRMD:0;iRNA_m5C:2.97455807762859e-07 54741 chr8 2005503 2005503 1 + C A STAD 2005499 + 2005479 2005519 41 GTGGCCGCCTATGGTGAGGCCAAGCGACAGCGCTTCCTCAG GTGGCCGCCTATGGTGAGGCCAAGAGACAGCGCTTCCTCAG < 41bp 0.575857228637566 0.881110741250479 0.6721337 0.45141912 prediction 0.610507025225827 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2005499 chr8:2005503 synonymous SNV . 0 25 hm5C_associated_SNPs_101596 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_54741 DeepMRMD:0;iRNA_m5C:0 54742 chr20 58348442 58348442 1 + C A LUSC 58348438 + 58348418 58348458 41 CGCATCTCACCACGGTCCACCGGCCTCTTCCCCCAAGCCGC CGCATCTCACCACGGTCCACCGGCATCTTCCCCCAAGCCGC < 41bp 0.411090790585727 0.805225930509385 0.18493754 0.15410027 prediction 0.610451861018771 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58348438 chr20:58348442 nonsynonymous SNV 0.986 2 25 hm5C_associated_SNPs_101597 0 0 0 0 1 exosome 0.500231643921091 0.50023164386826 0 0 hm5C_site_54742 DeepMRMD:0;iRNA_m5C:0 54743 chr1 227922967 227922967 1 + C A rs545637599 227922963 + 227922943 227922983 41 CTGTCGGCGAGGGCGCGCGTCTCGCGGTCCATCCAGCTCAG CTGTCGGCGAGGGCGCGCGTCTCGAGGTCCATCCAGCTCAG < 41bp 0.527037735617394 0.832251039116803 0.25465065 0.706533 prediction 0.610426606998818 Functional Gain - JMJD4 ENSG00000081692 CDS Human protein_coding chr1:227922963 chr1:227922967 nonsynonymous SNV 0.395 2 25 hm5C_associated_SNPs_101598 0 0 0 0 0 Ribosome 0.500231668343112 0.500233993809091 0.413066 4.65093195867183e-06 hm5C_site_54743 DeepMRMD:0.413066;iRNA_m5C:4.65093195867183e-06 54744 chr1 114447978 114447978 1 + C A rs28364566 114447974 + 114447954 114447994 41 AGTGCCCGGCTCGGCCTCCGCTCCCGCGCGGTTGGGAGTGT AGTGCCCGGCTCGGCCTCCGCTCCAGCGCGGTTGGGAGTGT < 41bp 0.563053018720836 0.868254054492375 0.09588975 0.8252633 prediction 0.610402071543077 Functional Gain - DCLRE1B ENSG00000118655 UTR5 Human protein_coding chr1:114447974 chr1:114447978 . . 0 25 hm5C_associated_SNPs_101599 0 0 1 0 0 chromatin 0.500231660221996 0.500231632288527 0.6505266 0 hm5C_site_54744 DeepMRMD:0.6505266;iRNA_m5C:0 54745 chr1 156128195 156128195 1 + T G UCEC 156128193 + 156128173 156128213 41 CCTCAGACACAGTGTTTCAACTTCATCCGTGTCCTGGTTTC CCTCAGACACAGTGTTTCAACTGCATCCGTGTCCTGGTTTC < 41bp 0.493605053240099 0.80519488711536 0.032844275 0.053247362 prediction 0.61038977423072 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156128193 chr1:156128195 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_101600 0 0 0 0 2 exosome 0.500231643921091 0.500231643931105 0 2.00264249627935e-11 hm5C_site_54745 DeepMRMD:0;iRNA_m5C:2.00264249627935e-11 54746 chr7 143806809 143806809 1 + T G STAD 143806807 + 143806787 143806827 41 CTGCTGGGGAATGGGGTCATCTTTGGGATTATCTGCCTGGA CTGCTGGGGAATGGGGTCATCTGTGGGATTATCTGCCTGGA < 41bp 0.488098620574726 0.80518856646034 0.21915808 0.4393639 prediction 0.610377132920679 Functional Gain - OR2A2 ENSG00000221989 CDS Human protein_coding chr7:143806807 chr7:143806809 nonsynonymous SNV 0.025 1 23 hm5C_associated_SNPs_101601 0 0 0 0 0 unknown 0.500231643921064 0.500231643763767 0 0 hm5C_site_54746 DeepMRMD:0;iRNA_m5C:0 54747 chr3 33415165 33415165 1 + T G GBM 33415163 + 33415143 33415183 41 CTGGTGCGAGGTTGTCGAGGCCTGAAAGCCCTGCTCCTGAG CTGGTGCGAGGTTGTCGAGGCCGGAAAGCCCTGCTCCTGAG < 41bp 0.488375433372162 0.805166457171065 0.33282596 0.7938878 prediction 0.61033291434213 Functional Gain - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33415163 chr3:33415165 nonsynonymous SNV 0.991 2 23 hm5C_associated_SNPs_101602 0 0 0 0 2 chromatin 0.50023164392109 0.500231643810632 0.5877756 0 hm5C_site_54747 DeepMRMD:0.5877756;iRNA_m5C:0 54748 chr3 15477870 15477870 1 + T G OV 15477868 + 15477848 15477888 41 GAGCTGAGGGCTGAAGTTGACATTATTGAACAAATGAGCAG GAGCTGAGGGCTGAAGTTGACAGTATTGAACAAATGAGCAG < 41bp 0.517220982170958 0.822376533020962 0.18499506 0.39971715 prediction 0.610311101700009 Functional Gain - EAF1 ENSG00000144597 CDS Human protein_coding chr3:15477868 chr3:15477870 nonsynonymous SNV 0.786 1 23 hm5C_associated_SNPs_101603 0 0 1 0 1 Ribosome 0.500231665263293 0.500231643686679 0 0 hm5C_site_54748 DeepMRMD:0;iRNA_m5C:0 54749 chr6 43034801 43034801 1 + T A STAD 43034797 + 43034777 43034817 41 GCCCTTAGCATCCGGGAGAGCACCTTGGGACCTGACCATCC GCCCTTAGCATCCGGGAGAGCACCATGGGACCTGACCATCC < 41bp 0.521201088673144 0.826348305527719 0.51377743 0.78138244 prediction 0.61029443370915 Functional Gain - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43034797 chr6:43034801 nonsynonymous SNV 0.980 4 25 hm5C_associated_SNPs_101604 0 0 1 0 2 Cytosol 0.500231643921002 0.500231643921056 0.53521002 1.08357767203415e-13 hm5C_site_54749 DeepMRMD:0.53521002;iRNA_m5C:1.08357767203415e-13 54750 chr15 25463517 25463517 1 + C A rs561998845 25463513 + 25463493 25463533 41 ATGTGTCCATGGAGGGGGAGCAAGCGTGAGCTGGCACCCAA ATGTGTCCATGGAGGGGGAGCAAGAGTGAGCTGGCACCCAA < 41bp 0.50643769129983 0.811563573808458 0.8907367 0.9180956 prediction 0.610251765017255 Functional Gain - SNHG14;SNORD115-15;SNORD115-21 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25463513 chr15:25463517 . . 0 25 hm5C_associated_SNPs_101605 0 0 0 0 0 unknown 0.500231643921095 0.500231643912735 0.0547177999999999 0 hm5C_site_54750 DeepMRMD:0.0547177999999999;iRNA_m5C:0 54751 chr15 45052067 45052067 1 + C A SKCM 45052063 + 45052043 45052083 41 AGGGAAATGCAGGACACTCTCTGCCCAGGTATCAGTGGGTA AGGGAAATGCAGGACACTCTCTGCACAGGTATCAGTGGGTA < 41bp 0.603473554696452 0.908579721670247 0.068246424 0.19605756 prediction 0.61021233394759 Functional Gain - TRIM69 ENSG00000185880 CDS Human protein_coding chr15:45052063 chr15:45052067 nonsynonymous SNV 0.952 1 25 hm5C_associated_SNPs_101606 0 0 0 0 1 Ribosome 0.500231643921763 0.500231643921093 0 0 hm5C_site_54751 DeepMRMD:0;iRNA_m5C:0 54752 chr16 68330375 68330375 1 + T G ACC 68330372 + 68330352 68330392 41 GCCTGTCTGTTGTTGGACAGCTCTACCTCCGCTGGAAGGAG GCCTGTCTGTTGTTGGACAGCTCGACCTCCGCTGGAAGGAG < 41bp 0.571320299474037 0.876415468600221 0.2333658 0.06359398 prediction 0.610190338252368 Functional Gain - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68330372 chr16:68330375 nonsynonymous SNV 0.999 5 24 hm5C_associated_SNPs_101607 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921042 0 0 hm5C_site_54752 DeepMRMD:0;iRNA_m5C:0 54753 chr11 6292657 6292657 1 + C A LUAD 6292653 + 6292633 6292673 41 CTGGAAACTTGCGCTCGCTGCTGCCCCCGGCCTCCACGAGC CTGGAAACTTGCGCTCGCTGCTGCACCCGGCCTCCACGAGC < 41bp 0.407043957851299 0.80505664851818 0.15940982 0.23984227 prediction 0.61011329703636 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292653 chr11:6292657 nonsynonymous SNV 0.813 0 25 hm5C_associated_SNPs_101608 0 0 0 0 1 unknown 0.500231643921101 0.500231643972853 0 1.03505426451989e-10 hm5C_site_54753 DeepMRMD:0;iRNA_m5C:1.03505426451989e-10 54754 chr19 56370043 56370043 1 + C A rs35079526 56370039 + 56370019 56370059 41 GAGAAATGGGGTTGTTGACGCTGACATCCCTGCGCTGCTGG GAGAAATGGGGTTGTTGACGCTGAAATCCCTGCGCTGCTGG < 41bp 0.415419534283313 0.805049925532102 0.15061542 0.11810124 prediction 0.610099851064204 Functional Gain - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56370039 chr19:56370043 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_101609 0 0 0 0 0 exosome 0.500231643937549 0.500231505115292 0 0 hm5C_site_54754 DeepMRMD:0;iRNA_m5C:0 54755 chr1 152286105 152286105 1 + A C rs146408041 152286108 - 152286088 152286128 41 CGTGGACACCGGGGGTCTAGCGGTAGTCAGGCCAGTGACAG CGTGGACACCGGGGGTCTAGCGGGAGTCAGGCCAGTGACAG < 41bp 0.512947881066198 0.817972681668887 0.81569004 0.942184 prediction 0.610049601205376 Functional Gain - FLG ENSG00000143631 CDS Human protein_coding chr1:152286108 chr1:152286105 synonymous SNV . 0 24 hm5C_associated_SNPs_101610 0 0 0 0 0 exosome 0.500231643921092 0.500231643921094 0.25298792 3.33066907387547e-15 hm5C_site_54755 DeepMRMD:0.25298792;iRNA_m5C:3.33066907387547e-15 54756 chr1 156845383 156845383 1 + C A UCEC 156845379 + 156845359 156845399 41 TTCATGACATTGGGTGGCAGCTCCCTGTCCCCCACCGAGGG TTCATGACATTGGGTGGCAGCTCCATGTCCCCCACCGAGGG < 41bp 0.38034999952083 0.805008696105734 0.11995509 0.95046926 prediction 0.610017392211468 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845379 chr1:156845383 nonsynonymous SNV 0.278 1 25 hm5C_associated_SNPs_101611 0 0 0 0 2 chromatin 0.50023149467973 0.500250387525904 0.90093852 3.77856923481357e-05 hm5C_site_54756 DeepMRMD:0.90093852;iRNA_m5C:3.77856923481357e-05 54757 chr14 104471636 104471636 1 + T G SKCM 104471634 + 104471614 104471654 41 TGTCCATTAGGAAGCACGATCTTGAAAGTGAAATTACTTGA TGTCCATTAGGAAGCACGATCTGGAAAGTGAAATTACTTGA < 41bp 0.489897707245375 0.805006229619882 0.061081648 0.096824884 prediction 0.610012459239764 Functional Gain - TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104471634 chr14:104471636 nonsynonymous SNV 0.953 4 23 hm5C_associated_SNPs_101612 0 0 0 0 0 nucleus 0.500231643914125 0.500231643908016 0 0 hm5C_site_54757 DeepMRMD:0;iRNA_m5C:0 54758 chr2 207509173 207509173 1 + C A LUAD 207509169 + 207509149 207509189 41 TCGCGTTTCCAACACTGTTTCAGGCTTCTGGGATTTTATGA TCGCGTTTCCAACACTGTTTCAGGATTCTGGGATTTTATGA < 41bp 0.551449593594347 0.85645396763443 0.8208462 0.9122165 prediction 0.610008748080165 Functional Gain - FAM237A ENSG00000235118 ncRNA_exonic Human protein_coding chr2:207509169 chr2:207509173 . . 0 25 hm5C_associated_SNPs_101613 0 0 0 0 0 unknown 0.500231643921092 0.500231643921095 0.1827406 4.88498130835069e-15 hm5C_site_54758 DeepMRMD:0.1827406;iRNA_m5C:4.88498130835069e-15 54759 chr1 32662746 32662746 1 + C A rs114079217 32662742 + 32662722 32662762 41 CCCTACCCCAGCCCCTGTGCCAGGCTAAGCTGGTACAAGAG CCCTACCCCAGCCCCTGTGCCAGGATAAGCTGGTACAAGAG < 41bp 0.529003884566437 0.83398001666292 0.55720544 0.7251212 prediction 0.609952264192967 Functional Gain - TXLNA ENSG00000084652 UTR3 Human protein_coding chr1:32662742 chr1:32662746 . . 0 25 hm5C_associated_SNPs_101614 0 0 1 0 0 Nucleus 0.500231643754643 0.500231643921059 0.33583152 3.32832428284746e-10 hm5C_site_54759 DeepMRMD:0.33583152;iRNA_m5C:3.32832428284746e-10 54760 chr22 51009633 51009633 1 + C A LUAD 51009629 + 51009609 51009649 41 GCCTGCACAAAGGCTGTGGACTCGCTGGTACAGGAACGCAC GCCTGCACAAAGGCTGTGGACTCGATGGTACAGGAACGCAC < 41bp 0.583218851750927 0.888189365224358 0.11546424 0.3644324 prediction 0.609941026946862 Functional Gain - CPT1B ENSG00000205560 CDS Human protein_coding chr22:51009629 chr22:51009633 nonsynonymous SNV 0.117 1 25 hm5C_associated_SNPs_101615 0 0 0 0 0 nucleolus 0.500232600374219 0.50025342337079 0 4.16459931429358e-05 hm5C_site_54760 DeepMRMD:0;iRNA_m5C:4.16459931429358e-05 54761 chr19 34303985 34303985 1 + C A rs117133644 34303981 + 34303961 34304001 41 AGGGTCCAAAGCTGGCCCAGCGAGCACCAGGGTCCCAGGTG AGGGTCCAAAGCTGGCCCAGCGAGAACCAGGGTCCCAGGTG < 41bp 0.454580110898853 0.804922010038942 0.5194833 0.84053004 prediction 0.609844020077883 Functional Gain - KCTD15 ENSG00000153885 UTR3 Human protein_coding chr19:34303981 chr19:34303985 . . 0 25 hm5C_associated_SNPs_101616 0 0 0 0 0 Cytosol 0.50023164390296 0.500231645524173 0.64209348 3.24242477311998e-09 hm5C_site_54761 DeepMRMD:0.64209348;iRNA_m5C:3.24242477311998e-09 54762 chr5 169018164 169018164 1 + T A BRCA 169018160 + 169018140 169018180 41 TTAAACAACAACAAAAAATGCACCTGGAGAAATTGGAAGAA TTAAACAACAACAAAAAATGCACCAGGAGAAATTGGAAGAA < 41bp 0.486258056719165 0.804915652719695 0.6931833 0.56793183 prediction 0.60983130543939 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169018160 chr5:169018164 nonsynonymous SNV 0.023 3 25 hm5C_associated_SNPs_101617 0 0 1 0 2 chromatin 0.500233051389123 0.500236379503179 0 6.65622811246713e-06 hm5C_site_54762 DeepMRMD:0;iRNA_m5C:6.65622811246713e-06 54763 chr9 100245510 100245510 1 + C A COAD 100245506 + 100245486 100245526 41 ACCCAGGCTACTTCGTCATCCAGCCTTGGCAGGAGATACAT ACCCAGGCTACTTCGTCATCCAGCATTGGCAGGAGATACAT < 41bp 0.396957809448116 0.804908393356553 0.090623975 0.10041404 prediction 0.609816786713107 Functional Gain - TDRD7 ENSG00000196116 CDS Human protein_coding chr9:100245506 chr9:100245510 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_101618 0 0 1 0 0 Ribosome 0.500231643921092 0.50023164392031 0 0 hm5C_site_54763 DeepMRMD:0;iRNA_m5C:0 54764 chr1 75606727 75606727 1 + C A LUSC 75606723 + 75606703 75606743 41 TCCTGCAGTGTTTGCAGAACCTCCCTAGGAAGGCACACCAG TCCTGCAGTGTTTGCAGAACCTCCATAGGAAGGCACACCAG < 41bp 0.611861464024656 0.916751955733165 0.17156073 0.97046477 prediction 0.609780983417018 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75606723 chr1:75606727 nonsynonymous SNV 0.984 5 25 hm5C_associated_SNPs_101619 0 0 0 0 2 exosome 0.500231643921897 0.500231643921093 0.94092954 0 hm5C_site_54764 DeepMRMD:0.94092954;iRNA_m5C:0 54765 chr14 21511652 21511652 1 + C A rs112710361 21511648 + 21511628 21511668 41 CAGACTGGCTTGCTCTTTGGCTGACCTTCAATTCCCTCTCC CAGACTGGCTTGCTCTTTGGCTGAACTTCAATTCCCTCTCC < 41bp 0.449823705637455 0.804870426196122 0.23560187 0.1321797 prediction 0.609740852392243 Functional Gain - RNASE7 ENSG00000165799 UTR3 Human protein_coding chr14:21511648 chr14:21511652 . . 0 25 hm5C_associated_SNPs_101620 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54765 DeepMRMD:0;iRNA_m5C:0 54766 chr19 13873793 13873793 1 + C A rs138278370 13873789 + 13873769 13873809 41 CCCCTGTCGCCAGCAGGCTCCTCCCAGGAGGCAGCTGACAC CCCCTGTCGCCAGCAGGCTCCTCCAAGGAGGCAGCTGACAC < 41bp 0.405230504919921 0.804835312134093 0.08912352 0.95440066 prediction 0.609670624268185 Functional Gain - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13873789 chr19:13873793 nonsynonymous SNV 0.289 0 25 hm5C_associated_SNPs_101621 0 0 0 0 0 Cytosol 0.500231643921059 0.500231641587654 0.90880132 0 hm5C_site_54766 DeepMRMD:0.90880132;iRNA_m5C:0 54767 chr22 38877312 38877312 1 + T A OV 38877308 + 38877288 38877328 41 TGGAGAGGCTGAGACCATAACTACTCACTACCTGTTCTTTC TGGAGAGGCTGAGACCATAACTACACACTACCTGTTCTTTC < 41bp 0.521740873871856 0.826571967930427 0.18042576 0.38314247 prediction 0.609662188117142 Functional Gain - KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38877308 chr22:38877312 synonymous SNV . 0 25 hm5C_associated_SNPs_101622 0 0 1 0 1 Ribosome 0.500231643921133 0.500231643921109 0 0 hm5C_site_54767 DeepMRMD:0;iRNA_m5C:0 54768 chr7 53103449 53103449 1 + C A LUAD 53103445 + 53103425 53103465 41 CCCCTGCTGCAAGGCCCCGACGCCCTGGCGGCTCCCATGAG CCCCTGCTGCAAGGCCCCGACGCCATGGCGGCTCCCATGAG < 41bp 0.5763548310595 0.88117475574529 0.35565692 0.69963187 prediction 0.609639849371579 Functional Gain - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103445 chr7:53103449 nonsynonymous SNV 0.010 2 25 hm5C_associated_SNPs_101623 0 0 0 0 0 unknown 0.500231643921092 0.500231643921088 0.39926374 0 hm5C_site_54768 DeepMRMD:0.39926374;iRNA_m5C:0 54769 chr5 78373431 78373431 1 + C A rs682985 78373427 + 78373407 78373447 41 AGAGGCAGTGATAGAACACCCAGACGCAGGTTGGTGTCCAC AGAGGCAGTGATAGAACACCCAGAAGCAGGTTGGTGTCCAC < 41bp 0.583723102884106 0.88853914744666 0.2595055 0.27811685 prediction 0.609632089125109 Functional Gain - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78373427 chr5:78373431 nonsynonymous SNV 0.070 0 25 hm5C_associated_SNPs_101624 0 0 1 0 1 cytosol 0.500231530690707 0.500231642839178 0 2.24296942574753e-07 hm5C_site_54769 DeepMRMD:0;iRNA_m5C:2.24296942574753e-07 54770 chr1 113466756 113466756 1 + C A rs545981064 113466752 + 113466732 113466772 41 CGCGTATGGCGCCAGCGCCCCCAGCATGACCTCGGCTGCCC CGCGTATGGCGCCAGCGCCCCCAGAATGACCTCGGCTGCCC < 41bp 0.440771497105178 0.804806730032754 0.41912752 0.428341 prediction 0.609613460065508 Functional Gain - AKR7A2P1 ENSG00000229020 ncRNA_exonic Human processed_pseudogene chr1:113466752 chr1:113466756 . . 0 25 hm5C_associated_SNPs_101625 0 0 0 0 0 unknown 0.500231758883554 0.500231645663554 0 0 hm5C_site_54770 DeepMRMD:0;iRNA_m5C:0 54771 chr3 112299984 112299984 1 + T G UCEC 112299981 + 112299961 112300001 41 GTCTTGATGGCCCAGGTTACCACTGTCATTATCACAACAGT GTCTTGATGGCCCAGGTTACCACGGTCATTATCACAACAGT < 41bp 0.528790376518217 0.83358899637681 0.13540718 0.5397633 prediction 0.609597239717185 Functional Gain - SLC35A5 ENSG00000138459 CDS Human protein_coding chr3:112299981 chr3:112299984 synonymous SNV . 0 24 hm5C_associated_SNPs_101626 0 0 1 0 0 nucleus 0.500231532367133 0.500231643919295 0.0795265999999999 2.23104323682222e-07 hm5C_site_54771 DeepMRMD:0.0795265999999999;iRNA_m5C:2.23104323682222e-07 54772 chr22 38221292 38221292 1 + T G rs529885128 38221289 + 38221269 38221309 41 CGCGCTTCCGCCGCCTGTGGCCGTGCGGCCGCCGACGCCGC CGCGCTTCCGCCGCCTGTGGCCGGGCGGCCGCCGACGCCGC < 41bp 0.437997250047012 0.80479402960657 0.36846244 0.9104338 prediction 0.609588059213141 Functional Gain - GALR3 ENSG00000128310 CDS Human protein_coding chr22:38221289 chr22:38221292 nonsynonymous SNV 0.907 2 24 hm5C_associated_SNPs_101627 0 0 0 0 0 nucleus 0.500231642915473 0.50023164392766 0.8208676 2.02437377971876e-09 hm5C_site_54772 DeepMRMD:0.8208676;iRNA_m5C:2.02437377971876e-09 54773 chr18 77895180 77895180 1 + T A OV 77895176 + 77895156 77895196 41 GTCTGTCACTCTGCCGGTTCCCCCTGGAGGCCTTGCGACTG GTCTGTCACTCTGCCGGTTCCCCCAGGAGGCCTTGCGACTG < 41bp 0.489013321056105 0.804790828536747 0.09726778 0.2507215 prediction 0.609581657073495 Functional Gain - ADNP2 ENSG00000101544 CDS Human protein_coding chr18:77895176 chr18:77895180 synonymous SNV . 0 25 hm5C_associated_SNPs_101628 0 0 1 0 0 Cytosol 0.500231645626927 0.500231646927233 0 2.60061083778851e-09 hm5C_site_54773 DeepMRMD:0;iRNA_m5C:2.60061083778851e-09 54774 chr19 41522587 41522587 1 + C A LUAD 41522583 + 41522563 41522603 41 GTCTTGGTGAAGGCATCGCCCGTGCGGAATTGTTCCTCTTC GTCTTGGTGAAGGCATCGCCCGTGAGGAATTGTTCCTCTTC < 41bp 0.431003207202354 0.804787922772482 0.015545607 0.026102692 prediction 0.609575845544963 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41522583 chr19:41522587 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_101629 0 0 0 0 1 Nucleus 0.500231647185765 0.5002316440145 0 0 hm5C_site_54774 DeepMRMD:0;iRNA_m5C:0 54775 chr15 76196876 76196876 1 + C A GBM 76196872 + 76196852 76196892 41 AGTGTGTGCGCAGAGTATTGCGGACCCATCGGAGCGTAACC AGTGTGTGCGCAGAGTATTGCGGAACCATCGGAGCGTAACC < 41bp 0.572739636219339 0.877492257286649 0.89901537 0.9064821 prediction 0.60950524213462 Functional Gain - FBXO22 ENSG00000167196 CDS Human protein_coding chr15:76196872 chr15:76196876 nonsynonymous SNV 0.956 0 25 hm5C_associated_SNPs_101630 0 0 1 0 0 Cytosol 0.500231643914925 0.500231641777804 0.01493346 0 hm5C_site_54775 DeepMRMD:0.01493346;iRNA_m5C:0 54776 chr8 143763429 143763429 1 + T G STAD 143763427 + 143763407 143763447 41 TACTACGTGGGCAAGAAGAACATCACGTGCTGTGACACCGA TACTACGTGGGCAAGAAGAACAGCACGTGCTGTGACACCGA < 41bp 0.50492684620288 0.809656358456884 0.2435816 0.5818956 prediction 0.609459024508007 Functional Gain - PSCA ENSG00000167653 CDS Human protein_coding chr8:143763427 chr8:143763429 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_101631 0 0 0 0 1 exosome 0.500231643915982 0.500231628223228 0.1637912 0 hm5C_site_54776 DeepMRMD:0.1637912;iRNA_m5C:0 54777 chr22 41077471 41077471 1 + C A LUSC 41077467 + 41077447 41077487 41 GGCTGCGGCATACGCCTGCCCAACCCAGACACTGACCTCTA GGCTGCGGCATACGCCTGCCCAACACAGACACTGACCTCTA < 41bp 0.393387180753285 0.804722097393651 0.056661695 0.06606957 prediction 0.609444194787303 Functional Gain - MCHR1 ENSG00000128285 CDS Human protein_coding chr22:41077467 chr22:41077471 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_101632 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_54777 DeepMRMD:0;iRNA_m5C:0 54778 chr8 94935109 94935109 1 + T A UCEC 94935105 + 94935085 94935125 41 AGTGGCATTTTCTGGAGCCACTGCTTGTGTGGCCCATGTGG AGTGGCATTTTCTGGAGCCACTGCATGTGTGGCCCATGTGG < 41bp 0.514525036917026 0.819229686474799 0.06115979 0.16560367 prediction 0.609409299115546 Functional Gain - PDP1 ENSG00000164951 CDS Human protein_coding chr8:94935105 chr8:94935109 synonymous SNV . 0 25 hm5C_associated_SNPs_101633 0 0 0 0 0 Ribosome 0.500231652503627 0.500231919547169 0 5.34087084114176e-07 hm5C_site_54778 DeepMRMD:0;iRNA_m5C:5.34087084114176e-07 54779 chr19 52868989 52868989 1 + C A PRAD 52868985 + 52868965 52869005 41 TTGGGAAGCAATGCAGAAAACAAGCCTATTAAAAATCAACT TTGGGAAGCAATGCAGAAAACAAGACTATTAAAAATCAACT < 41bp 0.439987040902883 0.804682442464839 0.4146848 0.39668676 prediction 0.609364884929678 Functional Gain - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52868985 chr19:52868989 nonsynonymous SNV 0.315 0 25 hm5C_associated_SNPs_101634 0 0 0 0 1 exosome 0.500230139095408 0.500231642309984 0 3.0064291514087e-06 hm5C_site_54779 DeepMRMD:0;iRNA_m5C:3.0064291514087e-06 54780 chr15 40754411 40754411 1 + C A THYM 40754407 + 40754387 40754427 41 CCAAGCAGCCACGTGTCCAGCGCCCACGCCCTCGCCGCCGC CCAAGCAGCCACGTGTCCAGCGCCAACGCCCTCGCCGCCGC < 41bp 0.597968472004863 0.902633361203073 0.5844115 0.5514477 prediction 0.609329778396418 Functional Gain - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40754407 chr15:40754411 nonsynonymous SNV 0.971 2 25 hm5C_associated_SNPs_101635 0 0 0 0 1 chromatin 0.500231643921092 0.500231645856807 0 3.87142939928253e-09 hm5C_site_54780 DeepMRMD:0;iRNA_m5C:3.87142939928253e-09 54781 chr17 68171866 68171866 1 + C A UCEC 68171862 + 68171842 68171882 41 ACTTGGTGGAAGCTCATGTTCGAGCACAGCTCCTCAAATCC ACTTGGTGGAAGCTCATGTTCGAGAACAGCTCCTCAAATCC < 41bp 0.584425524277248 0.889087000174875 0.81225276 0.80294836 prediction 0.609322951795253 Functional Gain - KCNJ2 ENSG00000123700 CDS Human protein_coding chr17:68171862 chr17:68171866 nonsynonymous SNV 0.262 5 25 hm5C_associated_SNPs_101636 0 0 0 0 0 exosome 0.500231643921098 0.500231643921097 0 0 hm5C_site_54781 DeepMRMD:0;iRNA_m5C:0 54782 chr19 41634036 41634036 1 + C A rs12461412 41634032 + 41634012 41634052 41 TGTGAGCGATGAGGCCCGCCCATGCGGGTTGCTACGTCCCC TGTGAGCGATGAGGCCCGCCCATGAGGGTTGCTACGTCCCC < 41bp 0.528420485190722 0.833075389263522 0.13367566 0.31882858 prediction 0.6093098081456 Functional Gain - CYP2F1 ENSG00000197446 UTR3 Human protein_coding chr19:41634032 chr19:41634036 . . 0 25 hm5C_associated_SNPs_101637 0 0 0 0 0 exosome 0.500231643921091 0.500231643921092 0 2.88657986402541e-15 hm5C_site_54782 DeepMRMD:0;iRNA_m5C:2.88657986402541e-15 54783 chr8 29961918 29961918 1 + T G UCEC 29961915 + 29961895 29961935 41 GATACAGATGCTATGAGTAACGCTTGTAAGGAACTTGCCAT GATACAGATGCTATGAGTAACGCGTGTAAGGAACTTGCCAT < 41bp 0.451240612333521 0.804650945163436 0.04006657 0.18943956 prediction 0.609301890326873 Functional Gain - LEPROTL1 ENSG00000104660 CDS Human protein_coding chr8:29961915 chr8:29961918 synonymous SNV . 0 24 hm5C_associated_SNPs_101638 0 0 1 0 1 Endoplasmic reticulum 0.50023164392035 0.500231643919581 0 0 hm5C_site_54783 DeepMRMD:0;iRNA_m5C:0 54784 chr3 46621297 46621297 1 + C A COAD 46621293 + 46621273 46621313 41 ATGCTGGGGTCCTTTTGTGCCTGCCCTCCCTCCTTCTACGG ATGCTGGGGTCCTTTTGTGCCTGCACTCCCTCCTTCTACGG < 41bp 0.597922291699864 0.902537005402213 0.054561377 0.08513439 prediction 0.609229427404699 Functional Gain - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46621293 chr3:46621297 nonsynonymous SNV 0.461 3 25 hm5C_associated_SNPs_101639 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54784 DeepMRMD:0;iRNA_m5C:0 54785 chrX 118370517 118370517 1 + C A UCEC 118370513 + 118370493 118370533 41 ACAGCGACGACGACGAGCCGCCCCCTCTGCCCCGCCTCAAG ACAGCGACGACGACGAGCCGCCCCATCTGCCCCGCCTCAAG < 41bp 0.428135107353939 0.804610898814793 0.030389696 0.1274715 prediction 0.609221797629586 Functional Gain - PGRMC1 ENSG00000101856 CDS Human protein_coding chrX:118370513 chrX:118370517 nonsynonymous SNV 0.968 1 25 hm5C_associated_SNPs_101640 0 0 1 0 0 Ribosome 0.50023164438843 0.500231649862837 0 1.09488129673707e-08 hm5C_site_54785 DeepMRMD:0;iRNA_m5C:1.09488129673707e-08 54786 chr2 6128128 6128128 1 + T G rs576301141 6128125 + 6128105 6128145 41 CATGTGCACACTGCATGCCCCAGTGCACACACACACAACCC CATGTGCACACTGCATGCCCCAGGGCACACACACACAACCC < 41bp 0.55082854410581 0.855437878506598 0.08067629 0.6383074 prediction 0.609218668801575 Functional Gain - LOC400940 ENSG00000232044 ncRNA_intronic Human processed_transcript chr2:6128125 chr2:6128128 . . 0 24 hm5C_associated_SNPs_101641 0 0 0 0 0 unknown 0.500231773863133 0.500231628905376 0.2766148 0 hm5C_site_54786 DeepMRMD:0.2766148;iRNA_m5C:0 54787 chr15 72637960 72637960 1 + C A rs2288259 72637956 + 72637936 72637976 41 GCAAAGGTGCTGGACATCCACAGGCTGCTACCTCTTGTCTA GCAAAGGTGCTGGACATCCACAGGATGCTACCTCTTGTCTA < 41bp 0.546394853959138 0.850998458406643 0.793466 0.8754872 prediction 0.609207208895011 Functional Gain - HEXA ENSG00000261460 ncRNA_exonic Human antisense chr15:72637956 chr15:72637960 . . 0 25 hm5C_associated_SNPs_101642 0 0 0 0 0 Endoplasmic reticulum 0.500242601705807 0.500232150518668 0.1640424 0 hm5C_site_54787 DeepMRMD:0.1640424;iRNA_m5C:0 54788 chr12 123341245 123341245 1 + C A rs59499651 123341241 + 123341221 123341261 41 CCAAGGCCGGAGAGCTGGCCCGCGCGCAGGAGGCCCTGAGC CCAAGGCCGGAGAGCTGGCCCGCGAGCAGGAGGCCCTGAGC < 41bp 0.590859097501505 0.895440161423083 0.49043718 0.5748117 prediction 0.609162127843156 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123341241 chr12:123341245 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_101643 0 0 1 0 2 Nucleus 0.500231643921093 0.500231643921092 0.1496234 0 hm5C_site_54788 DeepMRMD:0.1496234;iRNA_m5C:0 54789 chr20 32341075 32341075 1 + C A STAD 32341071 + 32341051 32341091 41 TGCCCCCACCGCCACCACCTCAGCCTCCACCACCTCCACCC TGCCCCCACCGCCACCACCTCAGCATCCACCACCTCCACCC < 41bp 0.597948176296912 0.902523346510306 0.33574176 0.34923267 prediction 0.609150340426788 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32341071 chr20:32341075 nonsynonymous SNV 0.061 5 25 hm5C_associated_SNPs_101644 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_54789 DeepMRMD:0;iRNA_m5C:0 54790 chr3 52812454 52812454 1 + C A OV 52812450 + 52812430 52812470 41 CACCAGCCAAGTGGTCAACACTGCCAATGAAGCCAGGGAAG CACCAGCCAAGTGGTCAACACTGCAAATGAAGCCAGGGAAG < 41bp 0.39183403323428 0.804568430311576 0.2804443 0.4951767 prediction 0.609136860623153 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812450 chr3:52812454 synonymous SNV . 0 25 hm5C_associated_SNPs_101645 0 0 0 4 2 Endoplasmic reticulum 0.500231643921092 0.500231644306929 0 7.71673169808196e-10 hm5C_site_54790 DeepMRMD:0;iRNA_m5C:7.71673169808196e-10 54791 chr1 78343886 78343886 1 + C A rs570219287 78343882 + 78343862 78343902 41 TGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGTGAA TGAGGTCAGGAGTTTGAGACCAGCATGACCAACATGGTGAA < 41bp 0.508844153476731 0.813397331953808 0.113591105 0.15549666 prediction 0.609106356954154 Functional Gain - MIGA1 ENSG00000180488 UTR3 Human protein_coding chr1:78343882 chr1:78343886 . . 0 25 hm5C_associated_SNPs_101646 0 0 0 0 0 unknown 0.5002316431838 0.500231121161037 0 0 hm5C_site_54791 DeepMRMD:0;iRNA_m5C:0 54792 chrX 595475 595475 1 + C A rs193922467 595471 + 595451 595491 41 CTGGAGCAGCTGAACGAGCTCGAGCGACTCTTCGACGAGAC CTGGAGCAGCTGAACGAGCTCGAGAGACTCTTCGACGAGAC < 41bp 0.590359270363609 0.894852801565145 0.78464544 0.8889761 prediction 0.608987062403072 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:595471 chrX:595475 synonymous SNV . 0 25 hm5C_associated_SNPs_101647 1 0 0 0 1 Nucleus 0.500231643662227 0.50022934287533 0.20866132 0 hm5C_site_54792 DeepMRMD:0.20866132;iRNA_m5C:0 Short stature, idiopathic, X-linked Short stature, idiopathic, X-linked 54793 chr10 114925530 114925530 1 + C A TGCT 114925526 + 114925506 114925546 41 CCTGTCCATGATGCCTCCGCCACCCGCCCTCCTGCTCGCTG CCTGTCCATGATGCCTCCGCCACCAGCCCTCCTGCTCGCTG < 41bp 0.538152051700267 0.842640670867915 0.2937212 0.22974017 prediction 0.608977238335297 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114925526 chr10:114925530 synonymous SNV . 0 25 hm5C_associated_SNPs_101648 0 0 1 0 0 Nucleus 0.5002316439233 0.500231644359012 0 8.71423377901692e-10 hm5C_site_54793 DeepMRMD:0;iRNA_m5C:8.71423377901692e-10 54794 chr11 64884592 64884592 1 + C A rs35984938 64884588 + 64884568 64884608 41 CCCCGGGACATCTCCAAGAACCCGCTCGGCGGCCGCGGGCT CCCCGGGACATCTCCAAGAACCCGATCGGCGGCCGCGGGCT < 41bp 0.437916455467562 0.804463621120161 0.7208335 0.5804814 prediction 0.608927242240322 Functional Gain - ZNHIT2 ENSG00000174276 CDS Human protein_coding chr11:64884588 chr11:64884592 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_101649 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_54794 DeepMRMD:0;iRNA_m5C:0 54795 chr2 218940177 218940177 1 + T A LUSC 218940173 + 218940153 218940193 41 AGGCTGAGGTCACAGGGGTTCTGCTGGTTGCAGAGGGTCAG AGGCTGAGGTCACAGGGGTTCTGCAGGTTGCAGAGGGTCAG < 41bp 0.502681870267427 0.807123345948296 0.4041343 0.589257 prediction 0.608882951361738 Functional Gain - RUFY4 ENSG00000188282 CDS Human protein_coding chr2:218940173 chr2:218940177 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101650 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.178514 0 hm5C_site_54795 DeepMRMD:0.178514;iRNA_m5C:0 54796 chr19 572461 572461 1 + C A rs561149009 572457 + 572437 572477 41 CCTGCCGGAGCCGGCGCGTACATGCGAGCGTGTGCGCGCGT CCTGCCGGAGCCGGCGCGTACATGAGAGCGTGTGCGCGCGT < 41bp 0.514709618954582 0.819149638893296 0.5284531 0.35272154 prediction 0.608880039877427 Functional Gain - BSG ENSG00000172270 intronic Human protein_coding chr19:572457 chr19:572461 . . 0 25 hm5C_associated_SNPs_101651 0 0 0 0 0 Ribosome 0.500231646065523 0.500231667168365 0 4.22056838367268e-08 hm5C_site_54796 DeepMRMD:0;iRNA_m5C:4.22056838367268e-08 54797 chr19 757468 757468 1 + C A UCEC 757464 + 757444 757484 41 CCACGGAGACCCCAGGACCCCCGGCCCACCTCGGTCCACGC CCACGGAGACCCCAGGACCCCCGGACCACCTCGGTCCACGC < 41bp 0.428624977005635 0.804435306740269 0.43225026 0.82781726 prediction 0.608870613480537 Functional Gain - MISP ENSG00000099812 CDS Human protein_coding chr19:757464 chr19:757468 synonymous SNV . 0 25 hm5C_associated_SNPs_101652 0 0 0 0 0 nucleus 0.500231643921093 0.500231643970524 0.65563452 9.88618076291914e-11 hm5C_site_54797 DeepMRMD:0.65563452;iRNA_m5C:9.88618076291914e-11 54798 chr7 76916837 76916837 1 + C A LUSC 76916833 + 76916813 76916853 41 TGAGCAGGTCTCCAGGCTCACAGACAGGCTCTGCAGCAAAA TGAGCAGGTCTCCAGGCTCACAGAAAGGCTCTGCAGCAAAA < 41bp 0.410874085148015 0.804431131652087 0.4404983 0.83963156 prediction 0.608862263304175 Functional Gain - CCDC146 ENSG00000135205 CDS Human protein_coding chr7:76916833 chr7:76916837 nonsynonymous SNV 0.827 1 25 hm5C_associated_SNPs_101653 0 0 0 0 2 exosome 0.50023164453244 0.500231769772067 0.67926312 2.50479253782743e-07 hm5C_site_54798 DeepMRMD:0.67926312;iRNA_m5C:2.50479253782743e-07 54799 chr7 38247143 38247143 1 + C A GBM 38247139 + 38247119 38247159 41 CAGAAGACATGGAGAACGCTCTCACCGGGAGCCAGAGCTCC CAGAAGACATGGAGAACGCTCTCAACGGGAGCCAGAGCTCC < 41bp 0.392467834018102 0.804425326649227 0.024170429 0.06601295 prediction 0.608850653298454 Functional Gain - STARD3NL ENSG00000010270 CDS Human protein_coding chr7:38247139 chr7:38247143 nonsynonymous SNV 0.717 0 25 hm5C_associated_SNPs_101654 0 0 1 0 1 chromatin 0.500231643976605 0.500231643921085 0 0 hm5C_site_54799 DeepMRMD:0;iRNA_m5C:0 54800 chr1 159166790 159166790 1 + G T KIRP 159166794 - 159166774 159166814 41 CCATGTTGCTGGTGGCTGTGCAGCCGTAGGTGCCACTGTCA CCATGTTGCTGGTGGCTGTGCAGCAGTAGGTGCCACTGTCA < 41bp 0.585750144190749 0.890160212480587 0.22449565 0.26051778 prediction 0.608820136579677 Functional Gain - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159166794 chr1:159166790 nonsynonymous SNV 0.638 2 25 hm5C_associated_SNPs_101655 0 0 0 0 0 exosome 0.503987496800122 0.500671801826675 0 0 hm5C_site_54800 DeepMRMD:0;iRNA_m5C:0 54801 chr16 83999259 83999259 1 + C A COAD 83999255 + 83999235 83999275 41 AGCCCCTATGAGGGTTACCGCAGCCTCCCCAGGCACCAGCT AGCCCCTATGAGGGTTACCGCAGCATCCCCAGGCACCAGCT < 41bp 0.407063429339809 0.804354708502199 0.77666736 0.7177435 prediction 0.608709417004399 Functional Gain - OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83999255 chr16:83999259 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_101656 0 0 0 0 0 chromatin 0.500231643921093 0.500231643921092 0 0 hm5C_site_54801 DeepMRMD:0;iRNA_m5C:0 54802 chr11 6292922 6292922 1 + C A rs199821533 6292918 + 6292898 6292938 41 CACAGGAAAAGGTAGCTTACCTGACACAAGAGGAATAAGAA CACAGGAAAAGGTAGCTTACCTGAAACAAGAGGAATAAGAA < 41bp 0.456514908182135 0.804350175379459 0.15497452 0.34337217 prediction 0.608700350758918 Functional Gain - CCKBR ENSG00000110148 UTR3 Human protein_coding chr11:6292918 chr11:6292922 . . 0 25 hm5C_associated_SNPs_101657 0 0 1 2 0 unknown 0.500231643928755 0.500231643921093 0 0 hm5C_site_54802 DeepMRMD:0;iRNA_m5C:0 54803 chr4 132649708 132649708 1 + C A rs544989355 132649704 + 132649684 132649724 41 CGCAGGGATGGAGAAGGAAGCCGGCAAGGGGATGGGGCAAG CGCAGGGATGGAGAAGGAAGCCGGAAAGGGGATGGGGCAAG < 41bp 0.494175645131189 0.8043470591317 0.72716975 0.83019423 prediction 0.6086941182634 Functional Gain - LINC02479;SNHG27 ENSG00000241392;ENSG00000252014 intergenic Human other chr4:132649704 chr4:132649708 . . 0 25 hm5C_associated_SNPs_101658 0 0 0 0 0 unknown 0.50023164391989 0.500231643921045 0.20604896 2.31015206964003e-12 hm5C_site_54803 DeepMRMD:0.20604896;iRNA_m5C:2.31015206964003e-12 54804 chr2 240500245 240500245 1 + C A UCEC 240500241 + 240500221 240500261 41 CTGGAGGCCCGAGAACCAGGCACGCCGACGACAGCACACTT CTGGAGGCCCGAGAACCAGGCACGACGACGACAGCACACTT < 41bp 0.455072797494691 0.804336393660056 0.33798558 0.22902262 prediction 0.608672787320113 Functional Gain - LOC101928111;LOC150935 ENSG00000196758 CDS Human lincRNA chr2:240500241 chr2:240500245 synonymous SNV . 0 25 hm5C_associated_SNPs_101659 0 0 0 0 0 unknown 0.500231643878108 0.500231642067857 0 0 hm5C_site_54804 DeepMRMD:0;iRNA_m5C:0 54805 chrX 82763625 82763625 1 + C A LUAD 82763621 + 82763601 82763641 41 TGGGTGCGATCATCCATCACCGCTCGCCACACGTAGCCCAC TGGGTGCGATCATCCATCACCGCTAGCCACACGTAGCCCAC < 41bp 0.416896510486126 0.804335462080154 0.1480076 0.3282893 prediction 0.608670924160308 Functional Gain - POU3F4 ENSG00000196767 CDS Human protein_coding chrX:82763621 chrX:82763625 stopgain 0.961 0 25 hm5C_associated_SNPs_101660 0 0 0 0 0 unknown 0.50023188969221 0.500231677590965 0 0 hm5C_site_54805 DeepMRMD:0;iRNA_m5C:0 54806 chr5 23527089 23527089 1 + C A LUAD 23527085 + 23527065 23527105 41 TCCTCACTCACCAGAGGAGACACACAGGGGAGAAGCCCTAT TCCTCACTCACCAGAGGAGACACAAAGGGGAGAAGCCCTAT < 41bp 0.400210901170961 0.804315046262823 0.05478093 0.2949558 prediction 0.608630092525646 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23527085 chr5:23527089 nonsynonymous SNV 0.226 1 25 hm5C_associated_SNPs_101661 0 0 0 0 0 unknown 0.50023164392041 0.500231372210576 0 0 hm5C_site_54806 DeepMRMD:0;iRNA_m5C:0 54807 chr11 64128041 64128041 1 + C A LIHC 64128037 + 64128017 64128057 41 CGCGTGTATGGGGGTGAGATCGTGCTGGCCCTGGAACACCT CGCGTGTATGGGGGTGAGATCGTGATGGCCCTGGAACACCT < 41bp 0.58465682560267 0.888941514511061 0.8590262 0.8811319 prediction 0.608569377816782 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64128037 chr11:64128041 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101662 0 0 1 0 2 chromatin 0.500231642913643 0.500231583436253 0.0442114 0 hm5C_site_54807 DeepMRMD:0.0442114;iRNA_m5C:0 54808 chr12 49742765 49742765 1 + C A LUAD 49742761 + 49742741 49742781 41 GCCACGCCCTGCTCTGGATGCTGACCCTGGGGGGAGGTGGG GCCACGCCCTGCTCTGGATGCTGAACCTGGGGGGAGGTGGG < 41bp 0.402771024738891 0.804270079930452 0.3826328 0.7034251 prediction 0.608540159860903 Functional Gain - DNAJC22 ENSG00000178401 CDS Human protein_coding chr12:49742761 chr12:49742765 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_101663 0 0 1 0 0 Ribosome 0.500231643923953 0.500231643933724 0.4068502 1.9542145679452e-11 hm5C_site_54808 DeepMRMD:0.4068502;iRNA_m5C:1.9542145679452e-11 54809 chr4 22749107 22749107 1 + C A LUAD 22749103 + 22749083 22749123 41 AGTACCTTTGGGGATCGTGTCAAGCAGTGGATCACCATAAA AGTACCTTTGGGGATCGTGTCAAGAAGTGGATCACCATAAA < 41bp 0.420742075660637 0.804259274753172 0.76208705 0.7344083 prediction 0.608518549506345 Functional Gain - GBA3 ENSG00000249948 CDS Human polymorphic_pseudogene chr4:22749103 chr4:22749107 unknown 0.998 0 25 hm5C_associated_SNPs_101664 0 0 0 0 0 unknown 0.500231643922358 0.500231643922711 0 7.05879799056675e-13 hm5C_site_54809 DeepMRMD:0;iRNA_m5C:7.05879799056675e-13 54810 chr19 36352463 36352463 1 + C A UCEC 36352459 + 36352439 36352479 41 CCAGCTCCCCCAGTAGTGACCGCCCTGCACTCTGCGCCTGC CCAGCTCCCCCAGTAGTGACCGCCATGCACTCTGCGCCTGC < 41bp 0.396703259306698 0.80422563358601 0.058505952 0.5014453 prediction 0.60845126717202 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352459 chr19:36352463 nonsynonymous SNV 0.879 3 25 hm5C_associated_SNPs_101665 0 0 0 0 2 exosome 0.500232663515578 0.500233204550104 0.00289059999999997 1.08206905058417e-06 hm5C_site_54810 DeepMRMD:0.00289059999999997;iRNA_m5C:1.08206905058417e-06 54811 chr20 61437755 61437755 1 + C A rs147397038 61437751 + 61437731 61437771 41 ACTAAAAATACAACATTAGCCAGGCGTGATGGGCACCTGTA ACTAAAAATACAACATTAGCCAGGAGTGATGGGCACCTGTA < 41bp 0.465490843138605 0.804201014599237 0.8231195 0.80802274 prediction 0.608402029198473 Functional Gain - OGFR ENSG00000060491 UTR5 Human protein_coding chr20:61437751 chr20:61437755 . . 0 25 hm5C_associated_SNPs_101666 0 0 0 0 0 Ribosome 0.500232444275795 0.50023164422901 0 0 hm5C_site_54811 DeepMRMD:0;iRNA_m5C:0 54812 chr2 224824475 224824475 1 + C A rs200574289 224824471 + 224824451 224824491 41 AACAAGGGACATCTTTTTCACAGACTTGCCTTACACAGTTT AACAAGGGACATCTTTTTCACAGAATTGCCTTACACAGTTT < 41bp 0.429221215466276 0.804192908352807 0.33533722 0.37355 prediction 0.608385816705614 Functional Gain - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824471 chr2:224824475 nonsynonymous SNV 0.397 0 25 hm5C_associated_SNPs_101667 0 0 1 0 0 Ribosome 0.500231640455907 0.500231643926448 0 6.94108348575639e-09 hm5C_site_54812 DeepMRMD:0;iRNA_m5C:6.94108348575639e-09 54813 chr5 176304651 176304651 1 + C A HNSC 176304647 + 176304627 176304667 41 ATGGACCACTGTGGGGAGCCCAGCCCTGACAGCTGGAGCCT ATGGACCACTGTGGGGAGCCCAGCACTGACAGCTGGAGCCT < 41bp 0.404596893028879 0.804190182250659 0.7389428 0.6211112 prediction 0.608380364501318 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176304647 chr5:176304651 nonsynonymous SNV 0.736 1 25 hm5C_associated_SNPs_101668 0 0 0 0 1 exosome 0.500231642745091 0.500231643921024 0 2.35186559116585e-09 hm5C_site_54813 DeepMRMD:0;iRNA_m5C:2.35186559116585e-09 54814 chr2 234627639 234627639 1 + C A rs141408391 234627635 + 234627615 234627655 41 AGCTCCATGCCAGAGGCCACCAGGCGGTGGTCCTCACCCCA AGCTCCATGCCAGAGGCCACCAGGAGGTGGTCCTCACCCCA < 41bp 0.570488944107174 0.874662925590896 0.89891434 0.91803753 prediction 0.608347962967444 Functional Gain - UGT1A4 ENSG00000244474 CDS Human protein_coding chr2:234627635 chr2:234627639 nonsynonymous SNV 0.027 1 25 hm5C_associated_SNPs_101669 0 0 0 0 0 exosome 0.500231643923363 0.500231643921092 0.0382463799999999 0 hm5C_site_54814 DeepMRMD:0.0382463799999999;iRNA_m5C:0 54815 chr19 12740544 12740544 1 + C A rs12327598 12740540 + 12740520 12740560 41 CCCCATCTCTACTAAAAATACAAACAATTAGCCGGGCGTGG CCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGG < 41bp 0.49972740942706 0.804156317820491 0.059809506 0.18145654 prediction 0.608312635640982 Functional Gain - ZNF791 ENSG00000173875 UTR3 Human protein_coding chr19:12740540 chr19:12740544 . . 0 25 hm5C_associated_SNPs_101670 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_54815 DeepMRMD:0;iRNA_m5C:0 54816 chr19 51361472 51361472 1 + C A rs2003783 51361468 + 51361448 51361488 41 CTCCGCCTGTCAGAGCCTGCCGAGCTCACGGATGCTGTGAA CTCCGCCTGTCAGAGCCTGCCGAGATCACGGATGCTGTGAA < 41bp 0.593226580023012 0.897369923679596 0.25515783 0.25547582 prediction 0.608286687313168 Functional Gain - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51361468 chr19:51361472 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_101671 0 0 0 0 1 Cytosol 0.500231800913928 0.500231693236393 0 0 hm5C_site_54816 DeepMRMD:0;iRNA_m5C:0 54817 chr6 29556136 29556136 1 + T G LIHC 29556133 + 29556113 29556153 41 CCACCATCATCCACCCCCGCCTGTGCTGGCAGCTGGCATCT CCACCATCATCCACCCCCGCCTGGGCTGGCAGCTGGCATCT < 41bp 0.43178297822543 0.804096752342508 0.23367983 0.6957068 prediction 0.608193504685017 Functional Gain - OR2H2 ENSG00000204657 CDS Human protein_coding chr6:29556133 chr6:29556136 nonsynonymous SNV 0.956 4 24 hm5C_associated_SNPs_101672 0 0 0 0 0 unknown 0.500231661544347 0.500231645018189 0.3914136 0 hm5C_site_54817 DeepMRMD:0.3914136;iRNA_m5C:0 54818 chr1 175092699 175092699 1 + T G LUAD 175092696 + 175092676 175092716 41 GTGGGGAAGGAGCACAGCAGCACTGTCCTGACGGGCCTGAG GTGGGGAAGGAGCACAGCAGCACGGTCCTGACGGGCCTGAG < 41bp 0.417532042111773 0.80405764047979 0.14964807 0.31122556 prediction 0.60811528095958 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175092696 chr1:175092699 synonymous SNV . 0 24 hm5C_associated_SNPs_101673 0 0 0 0 0 exosome 0.500231644243679 0.500231643921093 0 0 hm5C_site_54818 DeepMRMD:0;iRNA_m5C:0 54819 chr4 71062308 71062308 1 + C A rs61747755 71062304 + 71062284 71062324 41 ATTCCTGGGAGCCACATTGTCAGCCCCAGTAAGTGATTTTA ATTCCTGGGAGCCACATTGTCAGCACCAGTAAGTGATTTTA < 41bp 0.445085892143623 0.804041193629361 0.4392688 0.24174717 prediction 0.608082387258722 Functional Gain - ODAM ENSG00000109205 CDS Human protein_coding chr4:71062304 chr4:71062308 synonymous SNV . 0 25 hm5C_associated_SNPs_101674 0 0 0 0 1 exosome 0.500231647856825 0.500231380338094 0 0 hm5C_site_54819 DeepMRMD:0;iRNA_m5C:0 54820 chr2 45169838 45169838 1 + C A LUSC 45169834 + 45169814 45169854 41 TACCGCGTGCGCAAGAAGTTCCCGCTGCCACGCACCATCTG TACCGCGTGCGCAAGAAGTTCCCGATGCCACGCACCATCTG < 41bp 0.415346378465862 0.804008121737706 0.09127921 0.17065832 prediction 0.608016243475412 Functional Gain - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45169834 chr2:45169838 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101675 0 0 0 0 0 exosome 0.500231616964551 0.5002314597414 0 0 hm5C_site_54820 DeepMRMD:0;iRNA_m5C:0 54821 chr21 43979120 43979120 1 + C A THCA 43979116 + 43979096 43979136 41 CAGATGGGAAGGGCTCCATCCACCCGAACCACGTCGTCATT CAGATGGGAAGGGCTCCATCCACCAGAACCACGTCGTCATT < 41bp 0.388919052070319 0.803998847065568 0.43453354 0.31384018 prediction 0.607997694131135 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979116 chr21:43979120 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101676 0 0 0 0 2 Nucleus 0.50023161311668 0.500231643916655 0 6.15999484754326e-08 hm5C_site_54821 DeepMRMD:0;iRNA_m5C:6.15999484754326e-08 54822 chr11 74875117 74875117 1 + C A rs140953109 74875113 + 74875093 74875133 41 AGCGCTTCGGCCTCTCCAGCCAGACGTCGGGGCTGCTGGCC AGCGCTTCGGCCTCTCCAGCCAGAAGTCGGGGCTGCTGGCC < 41bp 0.421349420482575 0.803990432512796 0.95531195 0.956399 prediction 0.607980865025593 Functional Gain - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74875113 chr11:74875117 nonsynonymous SNV 0.313 0 25 hm5C_associated_SNPs_101677 0 0 0 0 0 cytosol 0.500231643910221 0.500231643904313 0.00217409999999996 0 hm5C_site_54822 DeepMRMD:0.00217409999999996;iRNA_m5C:0 54823 chr1 89236120 89236120 1 + C A rs35207128 89236116 + 89236096 89236136 41 TCATACGAATGCAGATTCTTCAGGCAGTCCAGACTAATGAA TCATACGAATGCAGATTCTTCAGGAAGTCCAGACTAATGAA < 41bp 0.422523521948135 0.803986001900845 0.7242791 0.613339 prediction 0.60797200380169 Functional Gain - PKN2 ENSG00000065243 CDS Human protein_coding chr1:89236116 chr1:89236120 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_101678 0 0 1 0 2 Nucleus 0.500231643994705 0.50023164391881 0 0 hm5C_site_54823 DeepMRMD:0;iRNA_m5C:0 54824 chr14 89307233 89307233 1 + C A BLCA 89307229 + 89307209 89307249 41 GCCCTGGAACGTCTTTGAAACTCCCTGGAACTAATCAGACA GCCCTGGAACGTCTTTGAAACTCCATGGAACTAATCAGACA < 41bp 0.386738039360042 0.803935036916239 0.22433391 0.9636776 prediction 0.607870073832477 Functional Gain - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89307229 chr14:89307233 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_101679 0 0 1 0 3 Nucleus 0.500231643941281 0.500231830661518 0.9273552 3.73440474987774e-07 hm5C_site_54824 DeepMRMD:0.9273552;iRNA_m5C:3.73440474987774e-07 54825 chr3 50614990 50614990 1 + T G rs2232251 50614988 + 50614968 50615008 41 AAGCTGCTATCTCTCTGACCCATGAGAATGCTCAGAGGTAG AAGCTGCTATCTCTCTGACCCAGGAGAATGCTCAGAGGTAG < 41bp 0.531629489213609 0.835547690893931 0.1891515 0.8773847 prediction 0.607836403360643 Functional Gain - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614988 chr3:50614990 nonsynonymous SNV 0.808 0 23 hm5C_associated_SNPs_101680 0 0 1 0 2 Ribosome 0.500231484414597 0.500231643929294 0.7547694 3.19029394013626e-07 hm5C_site_54825 DeepMRMD:0.7547694;iRNA_m5C:3.19029394013626e-07 54826 chr12 8673765 8673765 1 + T G LUSC 8673762 + 8673742 8673782 41 GACAACTCTCAGGGAGAAAACTGTGTTGTTCTTGTTTATAA GACAACTCTCAGGGAGAAAACTGGGTTGTTCTTGTTTATAA < 41bp 0.557740571198309 0.861645415460087 0.39777628 0.9038321 prediction 0.607809688523557 Functional Gain - CLEC4D ENSG00000166527 CDS Human protein_coding chr12:8673762 chr12:8673765 nonsynonymous SNV 0.977 3 24 hm5C_associated_SNPs_101681 0 0 0 0 1 exosome 0.500231643839364 0.500231643627101 0.8076642 0 hm5C_site_54826 DeepMRMD:0.8076642;iRNA_m5C:0 54827 chr19 19656722 19656722 1 + C A LUSC 19656718 + 19656698 19656738 41 TCCAGAGGCTGCTGGAGTCCCCGGCGACAGCACTTGGTGAC TCCAGAGGCTGCTGGAGTCCCCGGAGACAGCACTTGGTGAC < 41bp 0.568290871153324 0.872173907105967 0.8887552 0.9162038 prediction 0.607766071905287 Functional Gain - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19656718 chr19:19656722 nonsynonymous SNV 0.014 1 25 hm5C_associated_SNPs_101682 0 0 0 0 0 exosome 0.50023235931215 0.500231492543736 0.0548972000000001 0 hm5C_site_54827 DeepMRMD:0.0548972000000001;iRNA_m5C:0 54828 chr14 21464975 21464975 1 + T G SKCM 21464973 + 21464953 21464993 41 TCGTTGTGCCCGTGTCAGCTCCTGGGGAGATCTTTTACCTG TCGTTGTGCCCGTGTCAGCTCCGGGGGAGATCTTTTACCTG < 41bp 0.517029282423823 0.820910446897315 0.8620981 0.93924296 prediction 0.607762328946983 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464973 chr14:21464975 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_101683 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.15428972 0 hm5C_site_54828 DeepMRMD:0.15428972;iRNA_m5C:0 54829 chr22 39884219 39884219 1 + C A LUAD 39884215 + 39884195 39884235 41 CCGGCAGGACGGCTGGATCGCCGACGACTACCTGCGCACCT CCGGCAGGACGGCTGGATCGCCGAAGACTACCTGCGCACCT < 41bp 0.430030846932525 0.803880331802482 0.53949755 0.89545465 prediction 0.607760663604965 Functional Gain - MGAT3 ENSG00000128268 CDS Human protein_coding chr22:39884215 chr22:39884219 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_101684 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.7119142 0 hm5C_site_54829 DeepMRMD:0.7119142;iRNA_m5C:0 54830 chrX 136651199 136651199 1 + C A LUSC 136651195 + 136651175 136651215 41 TGTGCGACAAGTCCTACACGCACCCGAGCTCCCTGCGCAAA TGTGCGACAAGTCCTACACGCACCAGAGCTCCCTGCGCAAA < 41bp 0.389045111143654 0.803864488524861 0.08002639 0.14917916 prediction 0.607728977049723 Functional Gain - ZIC3 ENSG00000156925 CDS Human protein_coding chrX:136651195 chrX:136651199 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101685 0 0 0 0 1 exosome 0.500231643755852 0.500230211698091 0 0 hm5C_site_54830 DeepMRMD:0;iRNA_m5C:0 54831 chr14 31355167 31355167 1 + A T BLCA 31355171 - 31355151 31355191 41 GGAAATTGCTATCTCCAACACTGCTGGAGCCATCAATTAGA GGAAATTGCTATCTCCAACACTGCAGGAGCCATCAATTAGA < 41bp 0.484905033545811 0.803863275170885 0.021791965 0.06999794 prediction 0.607726550341769 Functional Gain - COCH ENSG00000100473 CDS Human protein_coding chr14:31355171 chr14:31355167 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_101686 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_54831 DeepMRMD:0;iRNA_m5C:0 54832 chr7 97822533 97822533 1 + C A LIHC 97822529 + 97822509 97822549 41 GGGTGAGTGTAGGGAGTAGTCTCCCGGAACTGGGACAGGAA GGGTGAGTGTAGGGAGTAGTCTCCAGGAACTGGGACAGGAA < 41bp 0.423047239072762 0.803840160355183 0.10521811 0.9547218 prediction 0.607680320710365 Functional Gain - LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97822529 chr7:97822533 nonsynonymous SNV 0.007 1 25 hm5C_associated_SNPs_101687 0 0 1 0 0 Nucleus 0.500231643921093 0.500231643921092 0.9094436 0 hm5C_site_54832 DeepMRMD:0.9094436;iRNA_m5C:0 54833 chr17 39406209 39406209 1 + C A LUAD 39406205 + 39406185 39406225 41 CCAGCCTTCCTGCTGCAGCACACCCTGCTGCCAGCCCACCT CCAGCCTTCCTGCTGCAGCACACCATGCTGCCAGCCCACCT < 41bp 0.588752221119419 0.89257986339177 0.040736735 0.08858234 prediction 0.607655284544703 Functional Gain - KRTAP9-4 ENSG00000241595 CDS Human protein_coding chr17:39406205 chr17:39406209 synonymous SNV . 0 25 hm5C_associated_SNPs_101688 0 0 0 0 0 unknown 0.50023164392109 0.500231643919565 0 0 hm5C_site_54833 DeepMRMD:0;iRNA_m5C:0 54834 chr13 46287512 46287512 1 + C A rs574446712 46287508 + 46287488 46287528 41 GCCGACCTGGAGCTGGACTACAACCCGCCGCGGGTGCAGCT GCCGACCTGGAGCTGGACTACAACACGCCGCGGGTGCAGCT < 41bp 0.40361922988246 0.803818090187363 0.1879569 0.14722422 prediction 0.607636180374726 Functional Gain - SPERT ENSG00000174015 CDS Human protein_coding chr13:46287508 chr13:46287512 nonsynonymous SNV 0.945 1 25 hm5C_associated_SNPs_101689 0 0 0 0 0 exosome 0.500231643565155 0.500231643921194 0 7.12077952158552e-10 hm5C_site_54834 DeepMRMD:0;iRNA_m5C:7.12077952158552e-10 54835 chr17 9503411 9503411 1 + C A CESC 9503407 + 9503387 9503427 41 GATGATGATGATAGCTTTTTCTACCTTGGCACCACGACTGG GATGATGATGATAGCTTTTTCTACATTGGCACCACGACTGG < 41bp 0.397150858263761 0.803814243530463 0.110180795 0.8859422 prediction 0.607628487060927 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9503407 chr17:9503411 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101690 0 0 0 0 2 nucleus 0.500231643921092 0.500231643921093 0.7718844 4.44089209850063e-16 hm5C_site_54835 DeepMRMD:0.7718844;iRNA_m5C:4.44089209850063e-16 54836 chr1 152732782 152732782 1 + T A LIHC 152732778 + 152732758 152732798 41 CCCCAGTGCCAGACCCAGGGCTCCTATGGGAGCTTCACTGA CCCCAGTGCCAGACCCAGGGCTCCAATGGGAGCTTCACTGA < 41bp 0.537832379059946 0.841607272551793 0.67019665 0.92827415 prediction 0.607549786983695 Functional Gain - KPRP ENSG00000203786 CDS Human protein_coding chr1:152732778 chr1:152732782 nonsynonymous SNV 0.067 0 25 hm5C_associated_SNPs_101691 0 0 0 0 0 exosome 0.500231643920882 0.500231643896789 0.516155 0 hm5C_site_54836 DeepMRMD:0.516155;iRNA_m5C:0 54837 chr5 154395199 154395199 1 + C A rs139510975 154395195 + 154395175 154395215 41 AAGAAGAATGTCAACCAAGCCAAGCTGAGTGAGCACCGCCA AAGAAGAATGTCAACCAAGCCAAGATGAGTGAGCACCGCCA < 41bp 0.423405061409217 0.80377428760747 0.10981697 0.18067935 prediction 0.607548575214939 Functional Gain - KIF4B ENSG00000226650 CDS Human protein_coding chr5:154395195 chr5:154395199 nonsynonymous SNV 0.198 2 25 hm5C_associated_SNPs_101692 0 0 0 0 0 exosome 0.500231643921862 0.500231643921092 0 0 hm5C_site_54837 DeepMRMD:0;iRNA_m5C:0 54838 chr21 45826582 45826582 1 + C A COAD 45826578 + 45826558 45826598 41 CACAACGAGCGCCGGGTGGACTGGCTGTTCCGAGGGGCCGT CACAACGAGCGCCGGGTGGACTGGATGTTCCGAGGGGCCGT < 41bp 0.587228520807172 0.890998478606131 0.56305766 0.3770162 prediction 0.607539915597917 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45826578 chr21:45826582 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101693 0 0 0 0 1 Ribosome 0.500231643923307 0.500231660992205 0 3.41377970336509e-08 hm5C_site_54838 DeepMRMD:0;iRNA_m5C:3.41377970336509e-08 54839 chr6 36929703 36929703 1 + C G rs139815357 36929702 + 36929682 36929722 41 GGCCCTACCAGGAGGGGACTCCGTGCTCCCAATGTCCCTCT GGCCCTACCAGGAGGGGACTCGGTGCTCCCAATGTCCCTCT < 41bp 0.500321644481992 0.804090624888573 0.75290453 0.80665076 prediction 0.607537960813161 Functional Gain - PI16 ENSG00000164530 CDS Human protein_coding chr6:36929702 chr6:36929703 nonsynonymous SNV 0.823 2 22 hm5C_associated_SNPs_101694 0 0 0 0 2 exosome 0.500231643921125 0.500231643921092 0.10749246 0 hm5C_site_54839 DeepMRMD:0.10749246;iRNA_m5C:0 54840 chr5 131722739 131722739 1 + T G LGG 131722736 + 131722716 131722756 41 GGTTCATCCCTGAGTCCCCCCGATGGCTCATCTCTCAGGGA GGTTCATCCCTGAGTCCCCCCGAGGGCTCATCTCTCAGGGA < 41bp 0.408819155317551 0.80376297280915 0.20436943 0.91681314 prediction 0.607525945618301 Functional Gain - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131722736 chr5:131722739 nonsynonymous SNV 0.941 4 24 hm5C_associated_SNPs_101695 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0.83362628 0 hm5C_site_54840 DeepMRMD:0.83362628;iRNA_m5C:0 54841 chr11 832997 832997 1 + C A rs533528756 832993 + 832973 833013 41 CGCCCCCGCAGCTGCTGCCGCCGCCGCCAGGGCCCGGACTC CGCCCCCGCAGCTGCTGCCGCCGCAGCCAGGGCCCGGACTC < 41bp 0.468973169096102 0.803734119932279 0.3343788 0.298782 prediction 0.607468239864558 Functional Gain - CD151 ENSG00000177697 UTR5 Human protein_coding chr11:832993 chr11:832997 . . 0 25 hm5C_associated_SNPs_101696 0 0 1 0 2 Ribosome 0.500231643910635 0.50023164392118 0 2.10904627095942e-11 hm5C_site_54841 DeepMRMD:0;iRNA_m5C:2.10904627095942e-11 54842 chr11 93808494 93808494 1 + C A UCEC 93808490 + 93808470 93808510 41 TCCAATTAAGGACACCAGCTCTGGCCTGGTAGGGCCTTTGC TCCAATTAAGGACACCAGCTCTGGACTGGTAGGGCCTTTGC < 41bp 0.397646862775477 0.803727119224687 0.42498446 0.52761626 prediction 0.607454238449375 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93808490 chr11:93808494 synonymous SNV . 0 25 hm5C_associated_SNPs_101697 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.0552325199999999 0 hm5C_site_54842 DeepMRMD:0.0552325199999999;iRNA_m5C:0 54843 chr16 1291636 1291636 1 + C A COAD 1291632 + 1291612 1291652 41 CCACACGGTCACCCTGCCCCCTGCCTCAGAGACCTTCCCCC CCACACGGTCACCCTGCCCCCTGCATCAGAGACCTTCCCCC < 41bp 0.597163524091362 0.900856827803091 0.06590325 0.18082383 prediction 0.607386607423458 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291632 chr16:1291636 synonymous SNV . 0 25 hm5C_associated_SNPs_101698 0 0 0 0 1 exosome 0.5002316438034 0.50023164392109 0 2.35379937763014e-10 hm5C_site_54843 DeepMRMD:0;iRNA_m5C:2.35379937763014e-10 54844 chr14 96134792 96134792 1 + C A LUSC 96134788 + 96134768 96134808 41 GAGAAAACGTGACCGAAAGCCACGCGGACAGGTGGCCGCAG GAGAAAACGTGACCGAAAGCCACGAGGACAGGTGGCCGCAG < 41bp 0.562765988629897 0.866430229704894 0.43136194 0.40883976 prediction 0.607328482149996 Functional Gain - TCL6 ENSG00000187621;ENSG00000259084 ncRNA_exonic Human other chr14:96134788 chr14:96134792 . . 0 25 hm5C_associated_SNPs_101699 0 0 0 0 0 Nucleus 0.500231646862377 0.500231643921093 0 0 hm5C_site_54844 DeepMRMD:0;iRNA_m5C:0 54845 chr2 106682235 106682235 1 + C A rs4266035 106682231 + 106682211 106682251 41 CCCCGCCGCCATGGCTGCCTCCCCCGCGCGGCCTGCTGTCC CCCCGCCGCCATGGCTGCCTCCCCAGCGCGGCCTGCTGTCC < 41bp 0.576146597130608 0.879770106389274 0.04653144 0.06340036 prediction 0.607247018517332 Functional Gain - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106682231 chr2:106682235 synonymous SNV . 0 25 hm5C_associated_SNPs_101700 0 0 0 0 1 exosome 0.500231643921092 0.500231643921061 0 0 hm5C_site_54845 DeepMRMD:0;iRNA_m5C:0 54846 chr2 128180553 128180553 1 + C A rs201371512 128180549 + 128180529 128180569 41 CTAGATCCCCGGCTGGACTACCGGCGCCCGCGCCCCTCGGG CTAGATCCCCGGCTGGACTACCGGAGCCCGCGCCCCTCGGG < 41bp 0.561581175485089 0.865186282590095 0.908159 0.9004814 prediction 0.607210214210012 Functional Gain - PROC ENSG00000115718 intronic Human protein_coding chr2:128180549 chr2:128180553 . . 0 25 hm5C_associated_SNPs_101701 0 0 1 0 1 nucleus 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_54846 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 54847 chr17 44953888 44953888 1 + C A LUAD 44953884 + 44953864 44953904 41 AGGACTCACCCAGCTTCTGCCGGCCCAGCAAGTACTCACCT AGGACTCACCCAGCTTCTGCCGGCACAGCAAGTACTCACCT < 41bp 0.397722893674035 0.803566118049677 0.43870696 0.6581875 prediction 0.607132236099354 Functional Gain - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44953884 chr17:44953888 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101702 0 0 0 0 1 exosome 0.500231643921092 0.502406223096398 0.316375 0.004349158350613 hm5C_site_54847 DeepMRMD:0.316375;iRNA_m5C:0.004349158350613 54848 chr6 55216136 55216136 1 + T G HNSC 55216134 + 55216114 55216154 41 ATGCACAGTTGGCCTCTTACCTTAAAGCTTGCTCAGCAAAT ATGCACAGTTGGCCTCTTACCTGAAAGCTTGCTCAGCAAAT < 41bp 0.521700336386723 0.825257609087201 0.044368863 0.19555593 prediction 0.607114545400957 Functional Gain - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55216134 chr6:55216136 synonymous SNV . 0 23 hm5C_associated_SNPs_101703 0 0 0 0 1 Nucleus 0.500231644073821 0.500231644042513 0 0 hm5C_site_54848 DeepMRMD:0;iRNA_m5C:0 54849 chr7 154876012 154876012 1 + T G OV 154876009 + 154875989 154876029 41 TCCTCATTGGCGTGTTCGTGCTCTGCTGGATCCCCTTCTTT TCCTCATTGGCGTGTTCGTGCTCGGCTGGATCCCCTTCTTT < 41bp 0.432567000296793 0.803542054489341 0.09070626 0.28034598 prediction 0.607084108978683 Functional Gain - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154876009 chr7:154876012 nonsynonymous SNV 0.970 4 24 hm5C_associated_SNPs_101704 0 0 0 0 0 exosome 0.500231643921026 0.500231643921339 0 6.26165785888588e-13 hm5C_site_54849 DeepMRMD:0;iRNA_m5C:6.26165785888588e-13 54850 chr17 48745239 48745239 1 + C A UCEC 48745235 + 48745215 48745255 41 GCTGCTCAGGTGACCCTGATCACCCTCTGGGTGTACGTGTA GCTGCTCAGGTGACCCTGATCACCATCTGGGTGTACGTGTA < 41bp 0.387738209199274 0.80351261590901 0.09125504 0.13684115 prediction 0.607025231818021 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48745235 chr17:48745239 nonsynonymous SNV 0.912 3 25 hm5C_associated_SNPs_101705 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231225728006 0 0 hm5C_site_54850 DeepMRMD:0;iRNA_m5C:0 54851 chr11 55860792 55860792 1 + C A LUAD 55860788 + 55860768 55860808 41 GCCTGAGTTGATGTAAATGGCTGGCAACAATTTCACTGAGG GCCTGAGTTGATGTAAATGGCTGGAAACAATTTCACTGAGG < 41bp 0.518366222683354 0.821873093640523 0.14927423 0.18234825 prediction 0.607013741914339 Functional Gain - OR8I2 ENSG00000172154 CDS Human protein_coding chr11:55860788 chr11:55860792 synonymous SNV . 0 25 hm5C_associated_SNPs_101706 0 0 0 0 0 unknown 0.500231644822578 0.50023164439676 0 0 hm5C_site_54851 DeepMRMD:0;iRNA_m5C:0 54852 chr11 57235309 57235309 1 + C A UCEC 57235305 + 57235285 57235325 41 ACCTTTGGGTCCAACCTGCTCACCCTGTGGCTCTTCTCCAA ACCTTTGGGTCCAACCTGCTCACCATGTGGCTCTTCTCCAA < 41bp 0.397251755841003 0.803499657348409 0.014393657 0.025324315 prediction 0.606999314696819 Functional Gain - RTN4RL2 ENSG00000186907 CDS Human protein_coding chr11:57235305 chr11:57235309 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101707 0 0 1 0 0 nucleoplasm 0.500231643921092 0.500231643921077 0 0 hm5C_site_54852 DeepMRMD:0;iRNA_m5C:0 54853 chr9 127631476 127631476 1 + C A rs535215872 127631472 + 127631452 127631492 41 AGGTGCTGGGAGCAGCCGGGCAGCCGCTTCCCGCCCCCGAG AGGTGCTGGGAGCAGCCGGGCAGCAGCTTCCCGCCCCCGAG < 41bp 0.484364218940356 0.803479119787801 0.4739718 0.47147003 prediction 0.606958239575601 Functional Gain - ARPC5L ENSG00000136950 UTR5 Human protein_coding chr9:127631472 chr9:127631476 . . 0 25 hm5C_associated_SNPs_101708 0 0 1 0 0 Ribosome 0.500231643921092 0.500231694467132 0 1.01092078264031e-07 hm5C_site_54853 DeepMRMD:0;iRNA_m5C:1.01092078264031e-07 54854 chr10 89692888 89692888 1 + T G UCEC 89692885 + 89692865 89692905 41 AATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACG AATCATGTTGCAGCAATTCACTGGAAAGCTGGAAAGGGACG < 41bp 0.46397254526373 0.803470204993698 0.1219033 0.29465193 prediction 0.606940409987396 Functional Gain - PTEN ENSG00000171862 CDS Human protein_coding chr10:89692885 chr10:89692888 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_101709 0 0 1 0 0 Ribosome 0.500231643975783 0.500231479624898 0 0 hm5C_site_54854 DeepMRMD:0;iRNA_m5C:0 54855 chr20 62836443 62836443 1 + C A LUSC 62836439 + 62836419 62836459 41 CACGTCCGGGGCAAGTACTCCAGGCACCGAAGGTAAGAGGA CACGTCCGGGGCAAGTACTCCAGGAACCGAAGGTAAGAGGA < 41bp 0.409871038989727 0.803442141227532 0.65591025 0.8232181 prediction 0.606884282455065 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62836439 chr20:62836443 nonsynonymous SNV 0.881 4 25 hm5C_associated_SNPs_101710 0 0 0 0 2 exosome 0.500231643913053 0.500231426547163 0.3346157 0 hm5C_site_54855 DeepMRMD:0.3346157;iRNA_m5C:0 54856 chr17 76203577 76203577 1 + C A rs139721769 76203573 + 76203553 76203593 41 CGGGGTTTCAACATATTGGCCAGGCTGGTCTCAAACTCCTA CGGGGTTTCAACATATTGGCCAGGATGGTCTCAAACTCCTA < 41bp 0.479793774291464 0.803436197491011 0.081585705 0.09606275 prediction 0.606872394982022 Functional Gain - AFMID ENSG00000183077 UTR3 Human protein_coding chr17:76203573 chr17:76203577 . . 0 25 hm5C_associated_SNPs_101711 0 0 1 0 0 Nucleus 0.500231551185976 0.500231658031872 0 2.13691792261272e-07 hm5C_site_54856 DeepMRMD:0;iRNA_m5C:2.13691792261272e-07 54857 chr5 176863247 176863247 1 + C A OV 176863243 + 176863223 176863263 41 GAGGTCCCCGAGGAGTATTCCGAGCGCTTTTCCCCGCAGGC GAGGTCCCCGAGGAGTATTCCGAGAGCTTTTCCCCGCAGGC < 41bp 0.578376493820711 0.881808741955509 0.8436541 0.9055053 prediction 0.606864496269595 Functional Gain - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863243 chr5:176863247 nonsynonymous SNV 0.229 2 25 hm5C_associated_SNPs_101712 0 0 1 0 1 Cytosol 0.500231608793186 0.500231643920597 0.1237024 7.02548226261257e-08 hm5C_site_54857 DeepMRMD:0.1237024;iRNA_m5C:7.02548226261257e-08 54858 chr20 239847 239847 1 + C A rs78479346 239843 + 239823 239863 41 GCTGCATCAGCTACTCCTTCCTGCCGAAGCCTGACCTACCA GCTGCATCAGCTACTCCTTCCTGCAGAAGCCTGACCTACCA < 41bp 0.581044601208753 0.884471513952059 0.09501395 0.23487437 prediction 0.606853825486613 Functional Gain - DEFB132 ENSG00000186458 CDS Human protein_coding chr20:239843 chr20:239847 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_101713 0 0 0 0 0 unknown 0.500231934562451 0.500200854711001 0 0 hm5C_site_54858 DeepMRMD:0;iRNA_m5C:0 54859 chr5 140559623 140559623 1 + C A STAD 140559619 + 140559599 140559639 41 CTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCGCTTCC CTCCTGGTGGACGGCTTCTCCCAGACCTACCTGCCGCTTCC < 41bp 0.557129497995168 0.860553242815475 0.82779515 0.89583397 prediction 0.606847489640613 Functional Gain - PCDHB8 ENSG00000120322 CDS Human protein_coding chr5:140559619 chr5:140559623 nonsynonymous SNV 0.328 1 25 hm5C_associated_SNPs_101714 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.13607764 0 hm5C_site_54859 DeepMRMD:0.13607764;iRNA_m5C:0 54860 chr5 134236580 134236580 1 + C A rs190490884 134236576 + 134236556 134236596 41 CAACCTCTGCTTCCCGGGTTCAAGCGATTCTCCAGCCTCAG CAACCTCTGCTTCCCGGGTTCAAGAGATTCTCCAGCCTCAG < 41bp 0.526670598910214 0.83009300321644 0.7052156 0.8326581 prediction 0.606844808612452 Functional Gain - TXNDC15 ENSG00000113621 UTR3 Human protein_coding chr5:134236576 chr5:134236580 . . 0 25 hm5C_associated_SNPs_101715 0 0 0 0 0 Ribosome 0.500231643922788 0.500231643921069 0.254885 0 hm5C_site_54860 DeepMRMD:0.254885;iRNA_m5C:0 54861 chr19 15793218 15793218 1 + C A LUSC 15793214 + 15793194 15793234 41 GCCAGGACAAGTGGCAGCACCTGGCCTCAGAGGGCAGCAGT GCCAGGACAAGTGGCAGCACCTGGACTCAGAGGGCAGCAGT < 41bp 0.594067785585437 0.897488990303923 0.29512113 0.8560926 prediction 0.606842409436972 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15793214 chr19:15793218 nonsynonymous SNV 0.959 1 25 hm5C_associated_SNPs_101716 0 0 1 0 1 exosome 0.500231644014404 0.500231643508607 0.7121852 0 hm5C_site_54861 DeepMRMD:0.7121852;iRNA_m5C:0 54862 chr12 124798868 124798868 1 + C A PRAD 124798864 + 124798844 124798884 41 CCCAACTGCACGTGGCGCAACTACCGCAGCCAGCTGACCCT CCCAACTGCACGTGGCGCAACTACAGCAGCCAGCTGACCCT < 41bp 0.404352987858991 0.803419933987591 0.1365312 0.85713536 prediction 0.606839867975182 Functional Gain - RFLNA ENSG00000178882 CDS Human protein_coding chr12:124798864 chr12:124798868 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_101717 0 0 0 0 0 unknown 0.500231643921092 0.500228453670933 0.71427072 0 hm5C_site_54862 DeepMRMD:0.71427072;iRNA_m5C:0 54863 chrX 130678488 130678488 1 + C A OV 130678484 + 130678464 130678504 41 AGTATGTGTCTGCTTGGTTGCTACCTCATGGGGGACATCAC AGTATGTGTCTGCTTGGTTGCTACATCATGGGGGACATCAC < 41bp 0.419834456446679 0.803415898807162 0.022227854 0.12249908 prediction 0.606831797614324 Functional Gain - OR13H1 ENSG00000171054 CDS Human protein_coding chrX:130678484 chrX:130678488 synonymous SNV . 0 25 hm5C_associated_SNPs_101718 0 0 0 0 0 exosome 0.500231643921097 0.500232268508089 0 1.24917398425239e-06 hm5C_site_54863 DeepMRMD:0;iRNA_m5C:1.24917398425239e-06 54864 chr15 72105839 72105839 1 + C A COAD 72105835 + 72105815 72105855 41 GGCACCGCCCGAGGCCTCTGCTGCCGGTGGTGCCCAGGGCC GGCACCGCCCGAGGCCTCTGCTGCAGGTGGTGCCCAGGGCC < 41bp 0.581719968617264 0.885130541739346 0.44858134 0.37754494 prediction 0.606821146244164 Functional Gain - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72105835 chr15:72105839 . . 0 25 hm5C_associated_SNPs_101719 0 0 0 0 0 nucleus 0.500231643920628 0.500231644109113 0 3.76969788717929e-10 hm5C_site_54864 DeepMRMD:0;iRNA_m5C:3.76969788717929e-10 54865 chr1 11766490 11766490 1 + C A LUAD 11766486 + 11766466 11766506 41 ACGCCTCAGGCCAGCCACCACCGCCGGCGGGGCCCGGGCAA ACGCCTCAGGCCAGCCACCACCGCAGGCGGGGCCCGGGCAA < 41bp 0.59229265334658 0.895694458905894 0.16851857 0.278021 prediction 0.606803611118628 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11766486 chr1:11766490 synonymous SNV . 0 25 hm5C_associated_SNPs_101720 0 0 0 0 0 exosome 0.500231667203286 0.500231774626878 0 2.14847182489208e-07 hm5C_site_54865 DeepMRMD:0;iRNA_m5C:2.14847182489208e-07 54866 chr1 177247912 177247912 1 + C A LUAD 177247908 + 177247888 177247928 41 ATCGCCAGCCTCGCTTCCGCCTGCCCAAGGAGAGGTGAGCA ATCGCCAGCCTCGCTTCCGCCTGCACAAGGAGAGGTGAGCA < 41bp 0.383098512135624 0.803379126786848 0.096048385 0.12080702 prediction 0.606758253573696 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177247908 chr1:177247912 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101721 0 0 0 0 0 Nucleus 0.500231643843547 0.500231643396194 0 0 hm5C_site_54866 DeepMRMD:0;iRNA_m5C:0 54867 chr4 90816678 90816678 1 + C A LUAD 90816674 + 90816654 90816694 41 GCCCCACGGGAAACATACCTCAGCCGGGGTGACAGCAGTTC GCCCCACGGGAAACATACCTCAGCAGGGGTGACAGCAGTTC < 41bp 0.583760514643568 0.88712217178491 0.33109704 0.5096516 prediction 0.606723314282685 Functional Gain - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90816674 chr4:90816678 synonymous SNV . 0 25 hm5C_associated_SNPs_101722 0 0 0 0 1 cytosol 0.500231643800639 0.500231662202813 0.0193032 3.68043469034518e-08 hm5C_site_54867 DeepMRMD:0.0193032;iRNA_m5C:3.68043469034518e-08 54868 chr5 10461398 10461398 1 + T G GBM 10461395 + 10461375 10461415 41 AGACGTTTTCCTACGTTTACCGCTACTTGGCCAGATTAGAC AGACGTTTTCCTACGTTTACCGCGACTTGGCCAGATTAGAC < 41bp 0.580955721923196 0.884300860239045 0.15843627 0.3094206 prediction 0.606690276631698 Functional Gain - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10461395 chr5:10461398 nonsynonymous SNV 0.078 4 24 hm5C_associated_SNPs_101723 0 0 0 0 1 exosome 0.500231757452221 0.500232863089329 0 2.21127421573541e-06 hm5C_site_54868 DeepMRMD:0;iRNA_m5C:2.21127421573541e-06 54869 chr11 67160217 67160217 1 + T G LUSC 67160215 + 67160195 67160235 41 AGCAATACCAGGCAGCCACCCCTGGTCAGGACCTGCTGCGC AGCAATACCAGGCAGCCACCCCGGGTCAGGACCTGCTGCGC < 41bp 0.460126441083874 0.803336559430892 0.062662214 0.8991482 prediction 0.606673118861783 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67160215 chr11:67160217 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_101724 0 0 1 0 2 nucleus 0.500231643921767 0.500231936184299 0.7982964 5.84525064128982e-07 hm5C_site_54869 DeepMRMD:0.7982964;iRNA_m5C:5.84525064128982e-07 54870 chr12 54963356 54963356 1 + T G LUSC 54963353 + 54963333 54963373 41 GTTCCGGAGAACATACACCTCTGTGGGCCCCACTTACTCTA GTTCCGGAGAACATACACCTCTGGGGGCCCCACTTACTCTA < 41bp 0.428419451164472 0.803333877383626 0.03613648 0.15510026 prediction 0.606667754767253 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54963353 chr12:54963356 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_101725 0 0 0 0 2 exosome 0.500231644267015 0.500231643733132 0 0 hm5C_site_54870 DeepMRMD:0;iRNA_m5C:0 54871 chr10 63212808 63212808 1 + G T LUAD 63212812 - 63212792 63212832 41 GACTGGTCTTCCTTAACGCCCTGGCCACTCGGTTGCTGTTC GACTGGTCTTCCTTAACGCCCTGGACACTCGGTTGCTGTTC < 41bp 0.578663184864509 0.881975883090505 0.2299622 0.36333883 prediction 0.606625396451992 Functional Gain - TMEM26 ENSG00000196932 CDS Human protein_coding chr10:63212812 chr10:63212808 nonsynonymous SNV 0.900 1 25 hm5C_associated_SNPs_101726 0 0 0 0 0 exosome 0.500231643136035 0.500231643920411 0 1.56875268331191e-09 hm5C_site_54871 DeepMRMD:0;iRNA_m5C:1.56875268331191e-09 54872 chr5 23526937 23526937 1 + T G LGG 23526934 + 23526914 23526954 41 ATACACACAGGGGAGAAGCCCTATGTCTGCAGGGAGTGTGG ATACACACAGGGGAGAAGCCCTAGGTCTGCAGGGAGTGTGG < 41bp 0.414672117077142 0.803281604345618 0.5481524 0.59821075 prediction 0.606563208691235 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23526934 chr5:23526937 stopgain 0.001 0 24 hm5C_associated_SNPs_101727 0 0 0 0 0 unknown 0.500231643921096 0.50023224098203 0.1001167 1.19412186827539e-06 hm5C_site_54872 DeepMRMD:0.1001167;iRNA_m5C:1.19412186827539e-06 54873 chr4 145655948 145655948 1 + T G UCEC 145655946 + 145655926 145655966 41 ACAACCTGCACAGACACTGACTTCAGAGTGCTCCAGGCTCT ACAACCTGCACAGACACTGACTGCAGAGTGCTCCAGGCTCT < 41bp 0.48218619924434 0.803254285345033 0.10431263 0.22340858 prediction 0.606508570690065 Functional Gain - HHIP ENSG00000164161 CDS Human protein_coding chr4:145655946 chr4:145655948 nonsynonymous SNV 0.326 2 23 hm5C_associated_SNPs_101728 0 0 0 0 2 cytosol 0.500230688592547 0.500224917853852 0 0 hm5C_site_54873 DeepMRMD:0;iRNA_m5C:0 54874 chr15 69854185 69854185 1 + C A rs553463285 69854181 + 69854161 69854201 41 CCTGATGTAATTAAAAATGGCAGGCTAGGGGCTCTGTTTCC CCTGATGTAATTAAAAATGGCAGGATAGGGGCTCTGTTTCC < 41bp 0.471247546601464 0.803250550045304 0.82016397 0.86251396 prediction 0.606501100090608 Functional Gain - DRAIC ENSG00000245750 ncRNA_exonic Human lincRNA chr15:69854181 chr15:69854185 . . 0 25 hm5C_associated_SNPs_101729 0 0 0 0 0 unknown 0.500231643921097 0.500231643921092 0.0846999800000001 0 hm5C_site_54874 DeepMRMD:0.0846999800000001;iRNA_m5C:0 54875 chr9 37080159 37080159 1 + C A UCEC 37080155 + 37080135 37080175 41 TCGGCGTCTCCGGTCCGCCCCTCACTTGTGGTGGGGCGCAG TCGGCGTCTCCGGTCCGCCCCTCAATTGTGGTGGGGCGCAG < 41bp 0.463503162921616 0.80324200781386 0.22943455 0.9108317 prediction 0.606484015627719 Functional Gain - EBLN3P ENSG00000233137 ncRNA_exonic Human other chr9:37080155 chr9:37080159 . . 0 25 hm5C_associated_SNPs_101730 0 0 1 1 0 unknown 0.500231636579733 0.500231643921092 0.8216634 1.46827165981023e-08 hm5C_site_54875 DeepMRMD:0.8216634;iRNA_m5C:1.46827165981023e-08 54876 chr3 136731037 136731037 1 + C A rs72978798 136731033 + 136731013 136731053 41 GCACTTCTATCCCAAGTCCCCAGGCCTCCTCCCTGCCCCTC GCACTTCTATCCCAAGTCCCCAGGACTCCTCCCTGCCCCTC < 41bp 0.515690597364049 0.818931011175256 0.79245806 0.5925582 prediction 0.606480827622414 Functional Gain - IL20RB;SOX14 ENSG00000174564;ENSG00000201325 intergenic Human other chr3:136731033 chr3:136731037 . . 0 25 hm5C_associated_SNPs_101731 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_54876 DeepMRMD:0;iRNA_m5C:0 54877 chr5 140531761 140531761 1 + T G rs17844442 140531759 + 140531739 140531779 41 CCAAGCACAGGCTGGTGGTGCTTGTCAAGGACAATGGCGAG CCAAGCACAGGCTGGTGGTGCTGGTCAAGGACAATGGCGAG < 41bp 0.482001994653247 0.803233413398149 0.17915773 0.4049291 prediction 0.606466826796298 Functional Gain - PCDHB6 ENSG00000113211 CDS Human protein_coding chr5:140531759 chr5:140531761 synonymous SNV . 0 23 hm5C_associated_SNPs_101732 0 0 0 0 0 exosome 0.500231643920879 0.500231643921697 0 1.63580260448271e-12 hm5C_site_54877 DeepMRMD:0;iRNA_m5C:1.63580260448271e-12 54878 chr1 32681437 32681437 1 + T G BRCA 32681435 + 32681415 32681455 41 ATAGTGGAAGAGGCCTTGTCCCTGGAAAACCAGCCTGGGGC ATAGTGGAAGAGGCCTTGTCCCGGGAAAACCAGCCTGGGGC < 41bp 0.525451402102514 0.828670280962594 0.12409037 0.88635266 prediction 0.606437757720159 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32681435 chr1:32681437 nonsynonymous SNV 0.046 0 23 hm5C_associated_SNPs_101733 0 0 0 0 1 cytosol 0.500231643921092 0.500231643920304 0.77270532 0 hm5C_site_54878 DeepMRMD:0.77270532;iRNA_m5C:0 54879 chr6 150719310 150719310 1 + C A LUAD 150719306 + 150719286 150719326 41 GCTGCTCCCCGTGGGGTACCCCAGCAAGGAGGCCACGGTGC GCTGCTCCCCGTGGGGTACCCCAGAAAGGAGGCCACGGTGC < 41bp 0.431994376832275 0.803203683583094 0.30545574 0.33897218 prediction 0.606407367166189 Functional Gain - IYD ENSG00000009765 CDS Human protein_coding chr6:150719306 chr6:150719310 nonsynonymous SNV 0.787 1 25 hm5C_associated_SNPs_101734 0 0 0 0 0 exosome 0.500231643921092 0.500231643921113 0 4.01900734914307e-14 hm5C_site_54879 DeepMRMD:0;iRNA_m5C:4.01900734914307e-14 54880 chr8 145095596 145095596 1 + C A CESC 145095592 + 145095572 145095612 41 GGGCACACCTGCTCCCAAGACGGCCTTCTCCTTCAACACTT GGGCACACCTGCTCCCAAGACGGCATTCTCCTTCAACACTT < 41bp 0.594493689185178 0.897695611425114 0.060997665 0.1446571 prediction 0.606403844479872 Functional Gain - SPATC1 ENSG00000186583 CDS Human protein_coding chr8:145095592 chr8:145095596 synonymous SNV . 0 25 hm5C_associated_SNPs_101735 0 0 0 0 0 chromatin 0.500231643810011 0.500231643908558 0 1.9709500698184e-10 hm5C_site_54880 DeepMRMD:0;iRNA_m5C:1.9709500698184e-10 54881 chr4 25351214 25351214 1 + C A ACC 25351210 + 25351190 25351230 41 TTGGTGGCTTGGTTGAACCTCTGGCTATTACATTCAAGAAG TTGGTGGCTTGGTTGAACCTCTGGATATTACATTCAAGAAG < 41bp 0.592065791912311 0.895257029058077 0.08162862 0.14935464 prediction 0.606382474291533 Functional Gain - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25351210 chr4:25351214 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101736 0 0 1 3 1 chromatin 0.500231644170163 0.500231650030277 0 1.17202272331696e-08 hm5C_site_54881 DeepMRMD:0;iRNA_m5C:1.17202272331696e-08 54882 chr11 55419059 55419059 1 + C A LUAD 55419055 + 55419035 55419075 41 TCCTAGTTTCCCTGAGAAAGCAGTCAGCAGAAGGCAGGCGC TCCTAGTTTCCCTGAGAAAGCAGTAAGCAGAAGGCAGGCGC < 41bp 0.563174856826452 0.86631305298081 0.13444081 0.26329774 prediction 0.606276392308717 Functional Gain - OR4S2 ENSG00000174982 CDS Human protein_coding chr11:55419055 chr11:55419059 stopgain 0.975 0 25 hm5C_associated_SNPs_101737 0 0 0 0 0 unknown 0.50023164392402 0.50023164392113 0 0 hm5C_site_54882 DeepMRMD:0;iRNA_m5C:0 54883 chr10 118969029 118969029 1 + T G STAD 118969027 + 118969007 118969047 41 GGCTATGGCTACATCTACCCCGTCACCAGGCTTGGCAAGTA GGCTATGGCTACATCTACCCCGGCACCAGGCTTGGCAAGTA < 41bp 0.504276461783063 0.807404521839829 0.054614484 0.3505531 prediction 0.606256120113533 Functional Gain - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118969027 chr10:118969029 nonsynonymous SNV 0.972 1 23 hm5C_associated_SNPs_101738 0 0 0 0 1 unknown 0.500231643925545 0.500231643921092 0 0 hm5C_site_54883 DeepMRMD:0;iRNA_m5C:0 54884 chr1 1398032 1398032 1 + C A rs181068440 1398028 + 1398008 1398048 41 GGGAGGAAGTGCTTAGAGATCGCTCGGCTGACAGAGGGCAT GGGAGGAAGTGCTTAGAGATCGCTAGGCTGACAGAGGGCAT < 41bp 0.401060334060806 0.803109726086598 0.11203095 0.22675815 prediction 0.606219452173197 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1398028 chr1:1398032 synonymous SNV . 0 25 hm5C_associated_SNPs_101739 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921092 0 1.77635683940025e-15 hm5C_site_54884 DeepMRMD:0;iRNA_m5C:1.77635683940025e-15 54885 chr5 174955072 174955072 1 + C A rs186202668 174955068 + 174955048 174955088 41 TGAGAAGCTGGGACTACAGGCGCCCGCCACCACGCCCGGCT TGAGAAGCTGGGACTACAGGCGCCAGCCACCACGCCCGGCT < 41bp 0.461319500324426 0.803088586649878 0.3089403 0.38715044 prediction 0.606177173299757 Functional Gain - SFXN1 ENSG00000164466 UTR3 Human protein_coding chr5:174955068 chr5:174955072 . . 0 25 hm5C_associated_SNPs_101740 0 0 1 0 0 Ribosome 0.500231643921091 0.50023164349569 0 0 hm5C_site_54885 DeepMRMD:0;iRNA_m5C:0 54886 chr4 77231134 77231134 1 + C A HNSC 77231130 + 77231110 77231150 41 GCCATGAGGATAAAGTGGTTCACGCATGGTGGGGGATTCAC GCCATGAGGATAAAGTGGTTCACGAATGGTGGGGGATTCAC < 41bp 0.420197364438934 0.803078394849568 0.06396827 0.089782685 prediction 0.606156789699135 Functional Gain - STBD1 ENSG00000118804 CDS Human protein_coding chr4:77231130 chr4:77231134 nonsynonymous SNV 0.020 1 25 hm5C_associated_SNPs_101741 0 0 1 0 0 exosome 0.500231643885449 0.50023164392031 0 6.97211177680401e-11 hm5C_site_54886 DeepMRMD:0;iRNA_m5C:6.97211177680401e-11 54887 chr19 52327337 52327337 1 + T G UCEC 52327334 + 52327314 52327354 41 ATAGACATCAACCTGTTTGTCAGTGTCTACCTGATCACCAT ATAGACATCAACCTGTTTGTCAGGGTCTACCTGATCACCAT < 41bp 0.584516758755753 0.887571752410163 0.04308191 0.9239826 prediction 0.606109987308821 Functional Gain - FPR3 ENSG00000187474 CDS Human protein_coding chr19:52327334 chr19:52327337 nonsynonymous SNV 0.015 4 24 hm5C_associated_SNPs_101742 0 0 0 0 0 cytosol 0.500231643921095 0.500231643921092 0.8479652 0 hm5C_site_54887 DeepMRMD:0.8479652;iRNA_m5C:0 54888 chr3 51989468 51989468 1 + C A UCEC 51989464 + 51989444 51989484 41 GGGGAGAAAGACAGCAGACTCATCCTTGCACCCCTCCATGG GGGGAGAAAGACAGCAGACTCATCATTGCACCCCTCCATGG < 41bp 0.509443786221574 0.812498405517313 0.036040872 0.06305662 prediction 0.606109238591479 Functional Gain - GPR62 ENSG00000180929 UTR5 Human protein_coding chr3:51989464 chr3:51989468 . . 0 25 hm5C_associated_SNPs_101743 0 0 0 0 0 exosome 0.50023164393823 0.500231643947373 0 1.8286261393996e-11 hm5C_site_54888 DeepMRMD:0;iRNA_m5C:1.8286261393996e-11 54889 chr13 114568907 114568907 1 + T G rs59239486 114568904 + 114568884 114568924 41 AGTAGGTATCAGAATGAACTCAGTTGGATGGGGCAGTTCAG AGTAGGTATCAGAATGAACTCAGGTGGATGGGGCAGTTCAG < 41bp 0.561763440341524 0.864802352297994 0.46700054 0.91760576 prediction 0.606077823912941 Functional Gain - GAS6-AS2 ENSG00000272695 ncRNA_exonic Human lincRNA chr13:114568904 chr13:114568907 . . 0 24 hm5C_associated_SNPs_101744 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.83521152 0 hm5C_site_54889 DeepMRMD:0.83521152;iRNA_m5C:0 54890 chr19 33167906 33167906 1 + C A rs139444314 33167902 + 33167882 33167922 41 CACCCGACGGCCGCCTGCTGCTGCCGCTCCCTCCCCTGAGA CACCCGACGGCCGCCTGCTGCTGCAGCTCCCTCCCCTGAGA < 41bp 0.444673340759793 0.803034828475553 0.6463215 0.7319342 prediction 0.606069656951107 Functional Gain - RGS9BP ENSG00000186326 UTR3 Human protein_coding chr19:33167902 chr19:33167906 . . 0 25 hm5C_associated_SNPs_101745 0 0 0 0 0 exosome 0.500231651875753 0.50023145436061 0.1712254 0 hm5C_site_54890 DeepMRMD:0.1712254;iRNA_m5C:0 54891 chr9 79635029 79635029 1 + C A rs376736596 79635025 + 79635005 79635045 41 CCACCACCATCATCACCACGCTGCCGCACACCACCACCATC CCACCACCATCATCACCACGCTGCAGCACACCACCACCATC < 41bp 0.565377424651261 0.868410019887877 0.03200671 0.01783079 prediction 0.606065190473233 Functional Gain - FOXB2 ENSG00000204612 CDS Human protein_coding chr9:79635025 chr9:79635029 synonymous SNV . 0 25 hm5C_associated_SNPs_101746 0 0 0 0 0 unknown 0.513842918803083 0.500231643873038 0 0 hm5C_site_54891 DeepMRMD:0;iRNA_m5C:0 54892 chr10 85944465 85944465 1 + C A HNSC 85944461 + 85944441 85944481 41 TCATGTGAGGCTCTGTAAACCATGCAAGCTTGAGCCAGAGC TCATGTGAGGCTCTGTAAACCATGAAAGCTTGAGCCAGAGC < 41bp 0.428931363477539 0.803013467565439 0.15919921 0.09964526 prediction 0.606026935130878 Functional Gain - C10orf99 ENSG00000188373 CDS Human protein_coding chr10:85944461 chr10:85944465 stopgain 0.008 0 25 hm5C_associated_SNPs_101747 0 0 0 0 1 unknown 0.500231342478015 0.500227155136657 0 0 hm5C_site_54892 DeepMRMD:0;iRNA_m5C:0 54893 chr7 24324980 24324980 1 + C A HNSC 24324976 + 24324956 24324996 41 CCGGACAACCCGGGCGAGGACGCACCAGCGGAGGACATGGC CCGGACAACCCGGGCGAGGACGCAACAGCGGAGGACATGGC < 41bp 0.603752726311009 0.906754915126524 0.35659856 0.5597933 prediction 0.606004377631031 Functional Gain - NPY ENSG00000122585 CDS Human protein_coding chr7:24324976 chr7:24324980 nonsynonymous SNV 0.859 1 25 hm5C_associated_SNPs_101748 0 0 0 0 1 exosome 0.500231643921813 0.500231627278421 0.1195866 0 hm5C_site_54893 DeepMRMD:0.1195866;iRNA_m5C:0 54894 chr17 40705565 40705565 1 + C A UCEC 40705561 + 40705541 40705581 41 TAGGGACTGTGCGGATGCTGCAGGCCTTCCTGCCAGACATG TAGGGACTGTGCGGATGCTGCAGGACTTCCTGCCAGACATG < 41bp 0.586727912188422 0.889690854120645 0.86238337 0.86788595 prediction 0.605925883864445 Functional Gain - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40705561 chr17:40705565 nonsynonymous SNV 0.960 2 25 hm5C_associated_SNPs_101749 0 0 1 0 1 chromatin 0.500231645195321 0.500231643922631 0.0110051600000001 0 hm5C_site_54894 DeepMRMD:0.0110051600000001;iRNA_m5C:0 54895 chr19 54233129 54233129 1 + T G UVM 54233126 + 54233106 54233146 41 CCTCTAGAGGGAAGCGCTTTCTGTTGGCTAAAAGAAAAGAA CCTCTAGAGGGAAGCGCTTTCTGGTGGCTAAAAGAAAAGAA < 41bp 0.508911198344506 0.811866777262581 0.28437254 0.49777052 prediction 0.605911157836151 Functional Gain - MIR518E ENSG00000207987 ncRNA_exonic Human miRNA chr19:54233126 chr19:54233129 . . 0 24 hm5C_associated_SNPs_101750 0 0 0 0 0 unknown 0.500231643920955 0.500231643921092 0 2.75335310107039e-13 hm5C_site_54895 DeepMRMD:0;iRNA_m5C:2.75335310107039e-13 54896 chr19 36033459 36033459 1 + T G UCEC 36033457 + 36033437 36033477 41 TCACCGGATGCACCAATGTTCGTCATGGGTGTCAATGAAAA TCACCGGATGCACCAATGTTCGGCATGGGTGTCAATGAAAA < 41bp 0.504211950541395 0.807124034557925 0.33400542 0.4419757 prediction 0.605824168033061 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033457 chr19:36033459 nonsynonymous SNV 0.925 4 23 hm5C_associated_SNPs_101751 0 0 0 0 2 chromatin 0.500231644356872 0.500231643920493 0 0 hm5C_site_54896 DeepMRMD:0;iRNA_m5C:0 54897 chr19 35642229 35642229 1 + T G LUAD 35642227 + 35642207 35642247 41 CTGCTGGGTATCCTCATCGTCATCAGTAAGTGCGACCCATT CTGCTGGGTATCCTCATCGTCAGCAGTAAGTGCGACCCATT < 41bp 0.525181833596632 0.828084780431152 0.20317313 0.7286204 prediction 0.60580589366904 Functional Gain - FXYD7 ENSG00000221946 CDS Human protein_coding chr19:35642227 chr19:35642229 nonsynonymous SNV 0.804 1 23 hm5C_associated_SNPs_101752 0 0 0 0 2 nucleoplasm 0.500231643921002 0.500231643751702 0.4572408 0 hm5C_site_54897 DeepMRMD:0.4572408;iRNA_m5C:0 54898 chr15 23811333 23811333 1 + C A UCEC 23811329 + 23811309 23811349 41 CCACTGAGGGTGGCGTTTCGCCGCCTGGGGCCTCTGCAGGT CCACTGAGGGTGGCGTTTCGCCGCATGGGGCCTCTGCAGGT < 41bp 0.574448673102479 0.877351012678832 0.6234312 0.6955538 prediction 0.605804679152706 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811329 chr15:23811333 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_101753 0 0 0 0 0 chromatin 0.50023164392006 0.500231644980902 0.1442452 2.12168460578255e-09 hm5C_site_54898 DeepMRMD:0.1442452;iRNA_m5C:2.12168460578255e-09 54899 chr9 32633631 32633631 1 + C A COAD 32633627 + 32633607 32633647 41 AGGTTGGACTGAATGGGGACCTGGCTGAGAGAGTGCACCAA AGGTTGGACTGAATGGGGACCTGGATGAGAGAGTGCACCAA < 41bp 0.43220206003066 0.802889990825055 0.30241752 0.709041 prediction 0.605779981650111 Functional Gain - TAF1L ENSG00000122728 CDS Human protein_coding chr9:32633627 chr9:32633631 nonsynonymous SNV 0.669 1 25 hm5C_associated_SNPs_101754 0 0 0 0 0 exosome 0.500231632191917 0.500231643458797 0.418082 2.25337597470343e-08 hm5C_site_54899 DeepMRMD:0.418082;iRNA_m5C:2.25337597470343e-08 54900 chr16 23700989 23700989 1 + T A SKCM 23700985 + 23700965 23701005 41 AGCAACGGCAGCGTGCAGATCAACTTCTTCCAGGTGAGCTG AGCAACGGCAGCGTGCAGATCAACATCTTCCAGGTGAGCTG < 41bp 0.488471541002678 0.802867808155709 0.041276872 0.066633314 prediction 0.605735616311418 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700985 chr16:23700989 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101755 0 0 1 0 1 Ribosome 0.5002316432621 0.500231643890521 0 1.25684196383702e-09 hm5C_site_54900 DeepMRMD:0;iRNA_m5C:1.25684196383702e-09 54901 chr10 68687890 68687890 1 + C A LUAD 68687886 + 68687866 68687906 41 ACGGTGGGAGCCACAGAGCCCGGCCCAGAGACCGATGCTGA ACGGTGGGAGCCACAGAGCCCGGCACAGAGACCGATGCTGA < 41bp 0.418273687499926 0.802848577616788 0.56841606 0.7209461 prediction 0.605697155233576 Functional Gain - LRRTM3 ENSG00000198739 CDS Human protein_coding chr10:68687886 chr10:68687890 nonsynonymous SNV 0.975 1 25 hm5C_associated_SNPs_101756 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.30506008 0 hm5C_site_54901 DeepMRMD:0.30506008;iRNA_m5C:0 54902 chr1 70033122 70033122 1 + C A rs368829269 70033118 + 70033098 70033138 41 GCACAGGCCGGGAGCCGCTTCTGCCGCTCAGGCGGCCGCGC GCACAGGCCGGGAGCCGCTTCTGCAGCTCAGGCGGCCGCGC < 41bp 0.508137318010006 0.810972694192042 0.40125266 0.52741677 prediction 0.605670752364073 Functional Gain - LRRC7 ENSG00000033122 upstream Human protein_coding chr1:70033118 chr1:70033122 . . 0 25 hm5C_associated_SNPs_101757 0 0 0 0 0 cytosol 0.500231643921109 0.500231643933266 0.05483354 2.43152165069205e-11 hm5C_site_54902 DeepMRMD:0.05483354;iRNA_m5C:2.43152165069205e-11 54903 chr1 32089310 32089310 1 + C A UCEC 32089306 + 32089286 32089326 41 ATGGTGGTGCTGCTGGTCTTCGCCCTCTGCTACCTGCCCAT ATGGTGGTGCTGCTGGTCTTCGCCATCTGCTACCTGCCCAT < 41bp 0.599988994606067 0.902802438073084 0.11837575 0.3583151 prediction 0.605626886934035 Functional Gain - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32089306 chr1:32089310 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_101758 0 0 0 0 1 Endoplasmic reticulum 0.500231643961447 0.500231643830281 0 0 hm5C_site_54903 DeepMRMD:0;iRNA_m5C:0 54904 chr17 42266554 42266554 1 + T G LUAD 42266552 + 42266532 42266572 41 GACAGCGGTAGCAACCAGCTCCTGGGCGCTATTGTGTCAGC GACAGCGGTAGCAACCAGCTCCGGGGCGCTATTGTGTCAGC < 41bp 0.46892074644266 0.802810408124591 0.0979099 0.51131177 prediction 0.605620816249182 Functional Gain - TMUB2 ENSG00000168591 CDS Human protein_coding chr17:42266552 chr17:42266554 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_101759 0 0 1 0 0 Endoplasmic reticulum 0.500231643922069 0.500231643889143 0.0226235400000001 0 hm5C_site_54904 DeepMRMD:0.0226235400000001;iRNA_m5C:0 54905 chr6 26252190 26252190 1 + T G rs201943873 26252188 + 26252168 26252208 41 CAGCCGTGCGCCTGCTGCTGCCTGGGGAACTGGCCAAGCAC CAGCCGTGCGCCTGCTGCTGCCGGGGGAACTGGCCAAGCAC < 41bp 0.515386991544502 0.818188258056373 0.83791345 0.92724764 prediction 0.605602533023742 Functional Gain - HIST1H2BH ENSG00000197459 CDS Human other chr6:26252188 chr6:26252190 synonymous SNV . 0 23 hm5C_associated_SNPs_101760 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0.17866838 0 hm5C_site_54905 DeepMRMD:0.17866838;iRNA_m5C:0 54906 chr11 56127868 56127868 1 + C A LIHC 56127864 + 56127844 56127884 41 GGAACCTGGGCATCATCACCCTCACCAGTGTTGACTCTCGA GGAACCTGGGCATCATCACCCTCAACAGTGTTGACTCTCGA < 41bp 0.41824024590881 0.802769393949687 0.035624355 0.027473241 prediction 0.605538787899375 Functional Gain - OR8J1 ENSG00000172487 CDS Human protein_coding chr11:56127864 chr11:56127868 nonsynonymous SNV 0.093 2 25 hm5C_associated_SNPs_101761 0 0 0 0 0 unknown 0.500231599077358 0.500231643925731 0 8.9696746696788e-08 hm5C_site_54906 DeepMRMD:0;iRNA_m5C:8.9696746696788e-08 54907 chr12 53676948 53676948 1 + C A UCEC 53676944 + 53676924 53676964 41 CCTGAGATAGCTCTCATAGACTCCCATAAGCTCCTCCGAAG CCTGAGATAGCTCTCATAGACTCCAATAAGCTCCTCCGAAG < 41bp 0.375888408294808 0.802765564156247 0.15150014 0.9569529 prediction 0.605531128312495 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53676944 chr12:53676948 nonsynonymous SNV 0.747 4 25 hm5C_associated_SNPs_101762 0 0 1 0 2 Nucleus 0.500231643604425 0.500230240170957 0.9139058 0 hm5C_site_54907 DeepMRMD:0.9139058;iRNA_m5C:0 54908 chr10 1205810 1205810 1 + C A rs4880778 1205806 + 1205786 1205826 41 GCCGGCGCAGGCCTGCGCGCCACGCGCTTTAGGTGGATGAG GCCGGCGCAGGCCTGCGCGCCACGAGCTTTAGGTGGATGAG < 41bp 0.481079840693281 0.802737461316912 0.1442503 0.17300555 prediction 0.605474922633825 Functional Gain - LINC00200 ENSG00000229205 ncRNA_exonic Human lincRNA chr10:1205806 chr10:1205810 . . 0 25 hm5C_associated_SNPs_101763 0 0 1 0 0 unknown 0.500231820074353 0.500231333057191 0 0 hm5C_site_54908 DeepMRMD:0;iRNA_m5C:0 54909 chr22 21357003 21357003 1 + C A rs147875142 21356999 + 21356979 21357019 41 GTGCAGTGGCGCGATCTCGGCTCACTGCAAACTCCGCCTCC GTGCAGTGGCGCGATCTCGGCTCAATGCAAACTCCGCCTCC < 41bp 0.444811980788528 0.80272193474004 0.21990767 0.24030301 prediction 0.605443869480081 Functional Gain - THAP7-AS1 ENSG00000230513 ncRNA_exonic Human antisense chr22:21356999 chr22:21357003 . . 0 25 hm5C_associated_SNPs_101764 0 0 0 0 0 unknown 0.500231643913124 0.500231643921092 0 1.59363633400744e-11 hm5C_site_54909 DeepMRMD:0;iRNA_m5C:1.59363633400744e-11 54910 chr6 144508185 144508185 1 + C A HNSC 144508181 + 144508161 144508201 41 AACGCGCTCACCCTCACCTTCCAGCGCGCCATGCACGACTA AACGCGCTCACCCTCACCTTCCAGAGCGCCATGCACGACTA < 41bp 0.424921438797961 0.802720154658803 0.3903378 0.573859 prediction 0.605440309317606 Functional Gain - STX11 ENSG00000135604 CDS Human protein_coding chr6:144508181 chr6:144508185 nonsynonymous SNV 0.953 0 25 hm5C_associated_SNPs_101765 0 0 1 0 0 Nucleus 0.500231629400656 0.500231643920075 0.147718 2.90388375567829e-08 hm5C_site_54910 DeepMRMD:0.147718;iRNA_m5C:2.90388375567829e-08 54911 chr4 154265827 154265827 1 + T G rs71620253 154265825 + 154265805 154265845 41 GGCGCCAAAATCAAACGCGTCCTGGCCTGTCCCGCCCCTCT GGCGCCAAAATCAAACGCGTCCGGGCCTGTCCCGCCCCTCT < 41bp 0.474028659589459 0.80271919421107 0.2526921 0.89390147 prediction 0.60543838842214 Functional Gain - MND1 ENSG00000121211 UTR5 Human protein_coding chr4:154265825 chr4:154265827 . . 0 23 hm5C_associated_SNPs_101766 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0.78780294 0 hm5C_site_54911 DeepMRMD:0.78780294;iRNA_m5C:0 54912 chr17 43247108 43247108 1 + C A rs73319052 43247104 + 43247084 43247124 41 CAGAGGCTCCGGACCGAAAACCAGCGGCTTCGTCAGGAGAA CAGAGGCTCCGGACCGAAAACCAGAGGCTTCGTCAGGAGAA < 41bp 0.420924942328206 0.802698076682822 0.8957838 0.90428865 prediction 0.605396153365644 Functional Gain - HEXIM2 ENSG00000168517 CDS Human protein_coding chr17:43247104 chr17:43247108 synonymous SNV . 0 25 hm5C_associated_SNPs_101767 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.0170097 0 hm5C_site_54912 DeepMRMD:0.0170097;iRNA_m5C:0 54913 chr7 44153412 44153412 1 + C A LUAD 44153408 + 44153388 44153428 41 TCCCACACATAGACCCATCGCGCCCTATGACCCCCCAACAG TCCCACACATAGACCCATCGCGCCATATGACCCCCCAACAG < 41bp 0.388543567613912 0.80268898486361 0.021368772 0.12130785 prediction 0.60537796972722 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44153408 chr7:44153412 nonsynonymous SNV 0.824 4 25 hm5C_associated_SNPs_101768 0 0 0 0 0 Endoplasmic reticulum 0.50023164392097 0.500231643921092 0 2.44471110022459e-13 hm5C_site_54913 DeepMRMD:0;iRNA_m5C:2.44471110022459e-13 54914 chrX 152086666 152086666 1 + C A UCEC 152086662 + 152086642 152086682 41 TCCTCCCCGCCCCTCCTCCTCTGGCTACAAGATGACCACTG TCCTCCCCGCCCCTCCTCCTCTGGATACAAGATGACCACTG < 41bp 0.596891434970594 0.899575918974328 0.25132948 0.44611272 prediction 0.605368968007468 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152086662 chrX:152086666 synonymous SNV . 0 25 hm5C_associated_SNPs_101769 0 0 0 0 2 chromatin 0.500231643921093 0.500231643921093 0 0 hm5C_site_54914 DeepMRMD:0;iRNA_m5C:0 54915 chr8 106331179 106331179 1 + C A COAD 106331175 + 106331155 106331195 41 GCAGCCGCCGCCGAGATGTCCCGGCGAAAGCAAAGCAAACC GCAGCCGCCGCCGAGATGTCCCGGAGAAAGCAAAGCAAACC < 41bp 0.528723941010062 0.831399971699081 0.8912704 0.8843546 prediction 0.605352061378038 Functional Gain - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106331175 chr8:106331179 synonymous SNV . 0 25 hm5C_associated_SNPs_101770 0 0 1 0 1 chromatin 0.500231643921073 0.500231643921271 0 3.95461441371481e-13 hm5C_site_54915 DeepMRMD:0;iRNA_m5C:3.95461441371481e-13 54916 chr2 228162427 228162427 1 + C A UCEC 228162423 + 228162403 228162443 41 CAGGGGAGCCCCAGGTTTTCCTGGCCTCCCGGGCAGAAAAG CAGGGGAGCCCCAGGTTTTCCTGGACTCCCGGGCAGAAAAG < 41bp 0.417783136487706 0.802649606178716 0.7340628 0.6494155 prediction 0.605299212357431 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228162423 chr2:228162427 synonymous SNV . 0 25 hm5C_associated_SNPs_101771 0 0 0 0 1 nucleus 0.500231643921093 0.500231643921097 0 8.21565038222616e-15 hm5C_site_54916 DeepMRMD:0;iRNA_m5C:8.21565038222616e-15 54917 chr11 18194908 18194908 1 + C A LUAD 18194904 + 18194884 18194924 41 CCTGAGCTTCACGGTGCTGACGTGCATCATTTCCCTTGTCG CCTGAGCTTCACGGTGCTGACGTGAATCATTTCCCTTGTCG < 41bp 0.568646977162204 0.871268238028408 0.21815282 0.37490827 prediction 0.605242521732408 Functional Gain - MRGPRX4 ENSG00000179817 CDS Human protein_coding chr11:18194904 chr11:18194908 stopgain 0.005 0 25 hm5C_associated_SNPs_101772 0 0 0 0 0 unknown 0.500231643911617 0.500231643923022 0 2.28099761301337e-11 hm5C_site_54917 DeepMRMD:0;iRNA_m5C:2.28099761301337e-11 54918 chr6 36181922 36181922 1 + C A UCEC 36181918 + 36181898 36181938 41 CCTCATGGCCCCTGACACCCCGGCCGGTACCCCACTTAGTG CCTCATGGCCCCTGACACCCCGGCAGGTACCCCACTTAGTG < 41bp 0.403963493606021 0.802619782493233 0.25863093 0.25654304 prediction 0.605239564986466 Functional Gain - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36181918 chr6:36181922 synonymous SNV . 0 25 hm5C_associated_SNPs_101773 0 0 1 0 0 chromatin 0.500231643946166 0.500231653228685 0 1.85650372852564e-08 hm5C_site_54918 DeepMRMD:0;iRNA_m5C:1.85650372852564e-08 54919 chr3 21448035 21448035 1 + C A rs72625843 21448031 + 21448011 21448051 41 CCGACTACATGCCTCCCACACAAGCGGTCTGTGCAGATCGC CCGACTACATGCCTCCCACACAAGAGGTCTGTGCAGATCGC < 41bp 0.551184745612531 0.85379935786989 0.15472329 0.34011823 prediction 0.605229224514719 Functional Gain - VENTXP7 ENSG00000236380 ncRNA_exonic Human processed_pseudogene chr3:21448031 chr3:21448035 . . 0 25 hm5C_associated_SNPs_101774 0 0 0 0 0 unknown 0.500231641159755 0.500231643437524 0 4.5555372807371e-09 hm5C_site_54919 DeepMRMD:0;iRNA_m5C:4.5555372807371e-09 54920 chr7 33296936 33296936 1 + C A rs113518488 33296932 + 33296912 33296952 41 TGCTTTTGGAAGATTTCTCCCTGGCTTTCTTCTGCCTGGTC TGCTTTTGGAAGATTTCTCCCTGGATTTCTTCTGCCTGGTC < 41bp 0.453225792246537 0.802590157005707 0.4365564 0.8421029 prediction 0.605180314011413 Functional Gain - BBS9 ENSG00000122507 CDS Human protein_coding chr7:33296932 chr7:33296936 synonymous SNV . 0 25 hm5C_associated_SNPs_101775 0 0 1 0 2 cytosol 0.500231643921101 0.50023164393683 0.6842058 3.14568371351243e-11 hm5C_site_54920 DeepMRMD:0.6842058;iRNA_m5C:3.14568371351243e-11 54921 chr1 150259121 150259121 1 + C A UCEC 150259117 + 150259097 150259137 41 CAGCATGGAGTGCAACCCTTCACCCACTCTGCCCCAACCAC CAGCATGGAGTGCAACCCTTCACCAACTCTGCCCCAACCAC < 41bp 0.397249452282684 0.802560168409006 0.0726794 0.08348745 prediction 0.605120336818012 Functional Gain - CIART ENSG00000159208 CDS Human protein_coding chr1:150259117 chr1:150259121 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_101776 0 0 0 0 0 exosome 0.500231643921092 0.500231644252584 0 6.62983223875813e-10 hm5C_site_54921 DeepMRMD:0;iRNA_m5C:6.62983223875813e-10 54922 chr15 75188576 75188576 1 + T A rs543652740 75188572 + 75188552 75188592 41 CAGTACCCAGGTGATATCGGCTGCTTTGCCATCTACTTCCT CAGTACCCAGGTGATATCGGCTGCATTGCCATCTACTTCCT < 41bp 0.481380822105095 0.802544185415132 0.26142728 0.21314755 prediction 0.605088370830263 Functional Gain - MPI ENSG00000178802 CDS Human protein_coding chr15:75188572 chr15:75188576 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_101777 0 0 1 0 2 Ribosome 0.500231629987222 0.500231101242127 0 0 hm5C_site_54922 DeepMRMD:0;iRNA_m5C:0 54923 chr15 72691142 72691142 1 + T G STAD 72691139 + 72691119 72691159 41 AATGCTGATCGCCATGTCCCCACTGAACTGGGTACAGTTTC AATGCTGATCGCCATGTCCCCACGGAACTGGGTACAGTTTC < 41bp 0.429383214321492 0.802543851224208 0.022857457 0.15681306 prediction 0.605087702448416 Functional Gain - TMEM202 ENSG00000187806 CDS Human protein_coding chr15:72691139 chr15:72691142 nonsynonymous SNV 0.948 3 24 hm5C_associated_SNPs_101778 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0 0 hm5C_site_54923 DeepMRMD:0;iRNA_m5C:0 54924 chr14 76107313 76107313 1 + C A BLCA 76107309 + 76107289 76107329 41 GGTCTTCAGCTTCTTTATGACTGGCTATCTCCCACTGGGAT GGTCTTCAGCTTCTTTATGACTGGATATCTCCCACTGGGAT < 41bp 0.409869256576335 0.802501781735519 0.45300508 0.4519934 prediction 0.605003563471039 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107309 chr14:76107313 synonymous SNV . 0 25 hm5C_associated_SNPs_101779 0 0 1 0 2 Cytosol 0.500232235456537 0.500231693136819 0 0 hm5C_site_54924 DeepMRMD:0;iRNA_m5C:0 54925 chr1 156878007 156878007 1 + C A rs113704391 156878003 + 156877983 156878023 41 CCCGGACGCCCGTTGCTTCCCGGCCAACGGCGCATGTCTGT CCCGGACGCCCGTTGCTTCCCGGCAAACGGCGCATGTCTGT < 41bp 0.597587238771913 0.900085854511642 0.26773593 0.5114542 prediction 0.604997231479458 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156878003 chr1:156878007 synonymous SNV . 0 25 hm5C_associated_SNPs_101780 0 0 0 0 1 cytosol 0.50023164391954 0.500268066431061 0.0229083999999999 7.28450230425004e-05 hm5C_site_54925 DeepMRMD:0.0229083999999999;iRNA_m5C:7.28450230425004e-05 54926 chr1 205035032 205035032 1 + T A KIRC 205035028 + 205035008 205035048 41 CGTCCAAGGAGGCCACAGTCCTGGTCCGAGGTGAGGGGTTT CGTCCAAGGAGGCCACAGTCCTGGACCGAGGTGAGGGGTTT < 41bp 0.513653674712355 0.816141335402953 0.67308474 0.832209 prediction 0.604975321381196 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205035028 chr1:205035032 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101781 0 0 0 0 1 exosome 0.500231643921092 0.500231643921093 0.31824852 2.22044604925031e-16 hm5C_site_54926 DeepMRMD:0.31824852;iRNA_m5C:2.22044604925031e-16 54927 chr17 80011178 80011178 1 + T G COAD 80011176 + 80011156 80011196 41 GTGGAGCCCATGCAGATCGACGTGGACCCCCAGGAAGACCC GTGGAGCCCATGCAGATCGACGGGGACCCCCAGGAAGACCC < 41bp 0.554563702394916 0.857026415787018 0.61205417 0.90091026 prediction 0.604925426784203 Functional Gain - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80011176 chr17:80011178 nonsynonymous SNV 0.992 1 23 hm5C_associated_SNPs_101782 0 0 1 0 3 Cytosol 0.500231643964828 0.500231685029675 0.57771218 8.21296943787075e-08 hm5C_site_54927 DeepMRMD:0.57771218;iRNA_m5C:8.21296943787075e-08 54928 chr3 52819072 52819072 1 + C G LGG 52819071 + 52819051 52819091 41 TCCCTGCAGGGTTTCTACAGCCAGGTAGCCAAACCCCTGCT TCCCTGCAGGGTTTCTACAGCGAGGTAGCCAAACCCCTGCT < 41bp 0.507906481098358 0.810359525903043 0.8200344 0.9371357 prediction 0.604906089609371 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52819071 chr3:52819072 nonsynonymous SNV 0.015 1 22 hm5C_associated_SNPs_101783 0 0 0 0 0 Endoplasmic reticulum 0.500231643920513 0.500231643921092 0.2342026 1.15796261468404e-12 hm5C_site_54928 DeepMRMD:0.2342026;iRNA_m5C:1.15796261468404e-12 54929 chr11 6806472 6806472 1 + C A HNSC 6806468 + 6806448 6806488 41 CCTCCTGCTTGGGCAGCTCTCTCTCATGGACCTCCTGTTCA CCTCCTGCTTGGGCAGCTCTCTCTAATGGACCTCCTGTTCA < 41bp 0.591177293245285 0.893630162918437 0.022252083 0.9280949 prediction 0.604905739346305 Functional Gain - OR2AG1 ENSG00000170803 CDS Human other chr11:6806468 chr11:6806472 synonymous SNV . 0 25 hm5C_associated_SNPs_101784 0 0 0 0 0 unknown 0.500231643921134 0.500231643899978 0.8561898 0 hm5C_site_54929 DeepMRMD:0.8561898;iRNA_m5C:0 54930 chr9 133573588 133573588 1 + C A rs201749338 133573584 + 133573564 133573604 41 TGGAAGGTGGAGACCAACTCCAGGCTGGATTCGGTCTTGCT TGGAAGGTGGAGACCAACTCCAGGATGGATTCGGTCTTGCT < 41bp 0.593293874642969 0.895700148820595 0.9080777 0.85940933 prediction 0.604812548355252 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133573584 chr9:133573588 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_101785 0 0 1 5 2 Ribosome 0.500231548855405 0.500231667352984 0 2.36995156610575e-07 hm5C_site_54930 DeepMRMD:0;iRNA_m5C:2.36995156610575e-07 54931 chr4 15826558 15826558 1 + C A rs1800561 15826554 + 15826534 15826574 41 GCCCATCAGTTCACACAGGTCCAGCGGGACATGTTCACCCT GCCCATCAGTTCACACAGGTCCAGAGGGACATGTTCACCCT < 41bp 0.419010604623572 0.802400215725179 0.14996281 0.3192071 prediction 0.604800431450357 Functional Gain - CD38 ENSG00000004468 CDS Human protein_coding chr4:15826554 chr4:15826558 synonymous SNV . 0 25 hm5C_associated_SNPs_101786 0 0 0 0 2 exosome 0.500231644119331 0.500231555072775 0 0 hm5C_site_54931 DeepMRMD:0;iRNA_m5C:0 54932 chr2 27373066 27373066 1 + C A UCEC 27373062 + 27373042 27373082 41 CTGCGCCAGGCCTTCTTGGCCTTGCAGGCTGCTCTGCCTGC CTGCGCCAGGCCTTCTTGGCCTTGAAGGCTGCTCTGCCTGC < 41bp 0.420242085322481 0.802392813184987 0.08867431 0.06685597 prediction 0.604785626369973 Functional Gain - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373062 chr2:27373066 nonsynonymous SNV 0.986 2 25 hm5C_associated_SNPs_101787 0 0 0 0 1 exosome 0.50023170493252 0.500231640965161 0 0 hm5C_site_54932 DeepMRMD:0;iRNA_m5C:0 54933 chr1 900972 900972 1 + T G rs9697711 900969 + 900949 900989 41 GTCCCGGGAAGGGTGGGGAGCAGTTGTCCTTCCTGTCGTCG GTCCCGGGAAGGGTGGGGAGCAGGTGTCCTTCCTGTCGTCG < 41bp 0.514458533695012 0.816847008543482 0.3285616 0.88639665 prediction 0.604776949696939 Functional Gain - KLHL17 ENSG00000187961 UTR3 Human protein_coding chr1:900969 chr1:900972 . . 0 24 hm5C_associated_SNPs_101788 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0.7727933 0 hm5C_site_54933 DeepMRMD:0.7727933;iRNA_m5C:0 54934 chr6 132891644 132891644 1 + C A OV 132891640 + 132891620 132891660 41 ATGATTTCAATCCTCCATTTCAAGCAGCTGCACTCTCCGAC ATGATTTCAATCCTCCATTTCAAGAAGCTGCACTCTCCGAC < 41bp 0.571768824848921 0.874145123910843 0.14248529 0.7580253 prediction 0.604752598123846 Functional Gain - TAAR6 ENSG00000146383 CDS Human protein_coding chr6:132891640 chr6:132891644 nonsynonymous SNV 0.756 2 25 hm5C_associated_SNPs_101789 0 0 0 0 0 unknown 0.500231643920609 0.500231643920578 0.5160506 0 hm5C_site_54934 DeepMRMD:0.5160506;iRNA_m5C:0 54935 chr16 56920913 56920913 1 + C A LUAD 56920909 + 56920889 56920929 41 GAGCTCCAGCTCATCGCCAACGGGCACACCAAGTGGCTGAA GAGCTCCAGCTCATCGCCAACGGGAACACCAAGTGGCTGAA < 41bp 0.400784462855737 0.802375205934172 0.8948134 0.90785766 prediction 0.604750411868345 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920909 chr16:56920913 nonsynonymous SNV 0.399 2 25 hm5C_associated_SNPs_101790 0 0 1 0 2 nucleus 0.500231643914395 0.500231643918371 0.0260885200000001 7.95141730236537e-12 hm5C_site_54935 DeepMRMD:0.0260885200000001;iRNA_m5C:7.95141730236537e-12 54936 chr6 99283457 99283457 1 + C A LUAD 99283453 + 99283433 99283473 41 CCCGCACCCGCACTCGCACCCACACCAGCAGCCGCCGCCCC CCCGCACCCGCACTCGCACCCACAACAGCAGCCGCCGCCCC < 41bp 0.581116594155119 0.883485029600271 0.10201895 0.19809586 prediction 0.604736870890304 Functional Gain - POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283453 chr6:99283457 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_101791 0 0 1 0 0 exosome 0.500231644069349 0.500231631016658 0 0 hm5C_site_54936 DeepMRMD:0;iRNA_m5C:0 54937 chr15 25429527 25429527 1 + T G BLCA 25429524 + 25429504 25429544 41 AATCATGCTCAATAGGATTACGCTGAGGCCCAGCCTAGGTG AATCATGCTCAATAGGATTACGCGGAGGCCCAGCCTAGGTG < 41bp 0.478910965052826 0.80234959527654 0.022420764 0.28910196 prediction 0.604699190553079 Functional Gain - SNORD115-8 ENSG00000200726 ncRNA_exonic Human snoRNA chr15:25429524 chr15:25429527 . . 0 24 hm5C_associated_SNPs_101792 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_54937 DeepMRMD:0;iRNA_m5C:0 54938 chr11 122774974 122774974 1 + T G SKCM 122774972 + 122774952 122774992 41 TCGAGCAGCCTTTCTCCGTACGTGAAGAGCTCAAGTTCACA TCGAGCAGCCTTTCTCCGTACGGGAAGAGCTCAAGTTCACA < 41bp 0.543502757815017 0.845801432706919 0.15320891 0.30671775 prediction 0.604597349783804 Functional Gain - C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122774972 chr11:122774974 nonsynonymous SNV 0.027 0 23 hm5C_associated_SNPs_101793 0 0 1 0 0 exosome 0.500231643914327 0.500231643921092 0 1.35305100457117e-11 hm5C_site_54938 DeepMRMD:0;iRNA_m5C:1.35305100457117e-11 54939 chr5 140531477 140531477 1 + T G rs140574794 140531474 + 140531454 140531494 41 TGAGCAGCGAGGCGCTGGTGCGCTTGCTGGTGCTGGACGCC TGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCC < 41bp 0.413124400124296 0.802289386627296 0.16528279 0.20482573 prediction 0.604578773254592 Functional Gain - PCDHB6 ENSG00000113211 CDS Human protein_coding chr5:140531474 chr5:140531477 nonsynonymous SNV 0.945 0 24 hm5C_associated_SNPs_101794 0 0 0 0 0 exosome 0.500231643690753 0.500231567433184 0 0 hm5C_site_54939 DeepMRMD:0;iRNA_m5C:0 54940 chr19 7742562 7742562 1 + T G STAD 7742560 + 7742540 7742580 41 TATGAGAATATCACCTTGGCCTTCAAAAATCAGGACCATGC TATGAGAATATCACCTTGGCCTGCAAAAATCAGGACCATGC < 41bp 0.4926768129141 0.802254490908425 0.04345733 0.034804672 prediction 0.604508981816849 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7742560 chr19:7742562 nonsynonymous SNV 0.952 1 23 hm5C_associated_SNPs_101795 0 0 0 0 2 Endoplasmic reticulum 0.500231643925115 0.500231644860628 0 1.87102688897767e-09 hm5C_site_54940 DeepMRMD:0;iRNA_m5C:1.87102688897767e-09 54941 chr12 133485517 133485517 1 + C A rs2695854 133485513 + 133485493 133485533 41 TGAAGTGAGCCCGGCGGCTGCCGCCGGAGGAGGAGCCCGGC TGAAGTGAGCCCGGCGGCTGCCGCAGGAGGAGGAGCCCGGC < 41bp 0.534253651742605 0.836503725393031 0.8869936 0.8922446 prediction 0.604500147300853 Functional Gain - LOC101928530;ZNF605 ENSG00000072609 UTR5 Human protein_coding chr12:133485513 chr12:133485517 . . 0 25 hm5C_associated_SNPs_101796 0 0 0 0 0 unknown 0.5002316420831 0.500231643921071 0.010502 3.67594310546338e-09 hm5C_site_54941 DeepMRMD:0.010502;iRNA_m5C:3.67594310546338e-09 54942 chr2 179209068 179209068 1 + C A ACC 179209064 + 179209044 179209084 41 CAACTCGGCGCCGGCAGAGGCTAGCGGCAGCAGTGGCTACA CAACTCGGCGCCGGCAGAGGCTAGAGGCAGCAGTGGCTACA < 41bp 0.411314412270614 0.802239292113322 0.28948784 0.63824975 prediction 0.604478584226644 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179209064 chr2:179209068 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101797 0 0 0 0 2 Cytosol 0.500231643921175 0.500231643921163 0.2764995 0 hm5C_site_54942 DeepMRMD:0.2764995;iRNA_m5C:0 54943 chr5 139554722 139554722 1 + C A rs562440189 139554718 + 139554698 139554738 41 TTGCCAGGGTGATCAGGTGACTCCCGGTTCGCGGCGCTGGG TTGCCAGGGTGATCAGGTGACTCCAGGTTCGCGGCGCTGGG < 41bp 0.581813363204196 0.884050363032007 0.6911372 0.9289433 prediction 0.60447399965562 Functional Gain - CYSTM1 ENSG00000120306 UTR5 Human protein_coding chr5:139554718 chr5:139554722 . . 0 25 hm5C_associated_SNPs_101798 0 0 1 0 0 Ribosome 0.500231643921086 0.500231367001768 0.4756122 0 hm5C_site_54943 DeepMRMD:0.4756122;iRNA_m5C:0 54944 chr12 124497330 124497330 1 + C A LUSC 124497326 + 124497306 124497346 41 GAAGGCCTTCAGTCAGAGTTCGAGCCTGTGCATCCACCAGA GAAGGCCTTCAGTCAGAGTTCGAGACTGTGCATCCACCAGA < 41bp 0.434323866381171 0.802232418498077 0.4339319 0.5282291 prediction 0.604464836996154 Functional Gain - ZNF664 ENSG00000179195 CDS Human protein_coding chr12:124497326 chr12:124497330 nonsynonymous SNV 0.940 1 25 hm5C_associated_SNPs_101799 0 0 1 0 0 Nucleus 0.500231644126648 0.50023180777936 0.0564582 3.27305424097091e-07 hm5C_site_54944 DeepMRMD:0.0564582;iRNA_m5C:3.27305424097091e-07 54945 chr5 140590559 140590559 1 + T G COAD 140590557 + 140590537 140590577 41 CACTGTCTACCTGGTGGTGGCGTTGGCCTCAGTGTCGTCGC CACTGTCTACCTGGTGGTGGCGGTGGCCTCAGTGTCGTCGC < 41bp 0.471015840412564 0.802218244205599 0.4772728 0.8706149 prediction 0.604436488411198 Functional Gain - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140590557 chr5:140590559 nonsynonymous SNV 0.005 3 23 hm5C_associated_SNPs_101800 0 0 0 0 0 exosome 0.500247594206305 0.500231530506763 0.7412298 0 hm5C_site_54945 DeepMRMD:0.7412298;iRNA_m5C:0 54946 chr12 53825025 53825025 1 + C A LAML 53825021 + 53825001 53825041 41 ATGCAGACCCAGAAGCACGGCTGACAGCTGAGTGTGTACAG ATGCAGACCCAGAAGCACGGCTGAAAGCTGAGTGTGTACAG < 41bp 0.481658466739913 0.802204959443225 0.082883835 0.29314512 prediction 0.60440991888645 Functional Gain - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53825021 chr12:53825025 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_101801 0 0 0 0 1 exosome 0.500231619343264 0.500231524012852 0 0 hm5C_site_54946 DeepMRMD:0;iRNA_m5C:0 54947 chr3 97887945 97887945 1 + C A LUSC 97887941 + 97887921 97887961 41 ATGCAAACCTTTACTTTATCCAGCCATTATGACCAATGGAC ATGCAAACCTTTACTTTATCCAGCAATTATGACCAATGGAC < 41bp 0.442763974456589 0.802202051059407 0.03890872 0.053323805 prediction 0.604404102118814 Functional Gain - OR5H15 ENSG00000233412 CDS Human protein_coding chr3:97887941 chr3:97887945 synonymous SNV . 0 25 hm5C_associated_SNPs_101802 0 0 0 0 0 unknown 0.500231643921093 0.500231643919881 0 0 hm5C_site_54947 DeepMRMD:0;iRNA_m5C:0 54948 chr19 5456479 5456479 1 + C A LUAD 5456475 + 5456455 5456495 41 AGGGCGACCAACTCAAGATCCTGCCCTGCTCCCACACCTAC AGGGCGACCAACTCAAGATCCTGCACTGCTCCCACACCTAC < 41bp 0.414833919812298 0.802195253060731 0.12187034 0.12857878 prediction 0.604390506121462 Functional Gain - ZNRF4 ENSG00000105428 CDS Human protein_coding chr19:5456475 chr19:5456479 nonsynonymous SNV 0.700 3 25 hm5C_associated_SNPs_101803 0 0 0 0 0 unknown 0.500212585445075 0.500231678994257 0 3.81870983636734e-05 hm5C_site_54948 DeepMRMD:0;iRNA_m5C:3.81870983636734e-05 54949 chrX 106845185 106845185 1 + C A ESCA 106845181 + 106845161 106845201 41 AGCTGTGACTGCAAGCGCATCTGCCGGGGGGGCCGGCCACA AGCTGTGACTGCAAGCGCATCTGCAGGGGGGGCCGGCCACA < 41bp 0.587002355437182 0.889178428621393 0.40952232 0.7643846 prediction 0.60435214636842 Functional Gain - FRMPD3 ENSG00000147234 CDS Human protein_coding chrX:106845181 chrX:106845185 synonymous SNV . 0 25 hm5C_associated_SNPs_101804 0 0 0 0 0 exosome 0.500231643920393 0.500231644007205 0.5287692 1.73625780419684e-10 hm5C_site_54949 DeepMRMD:0.5287692;iRNA_m5C:1.73625780419684e-10 54950 chr20 308923 308923 1 + C A rs6050226 308919 + 308899 308939 41 TCTGCCCCGCCCCGCCCCTCCGGCCTCCCCACACCCCCCTT TCTGCCCCGCCCCGCCCCTCCGGCATCCCCACACCCCCCTT < 41bp 0.570593292553777 0.87276138813061 0.34046793 0.29467303 prediction 0.604336191153667 Functional Gain - SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:308919 chr20:308923 . . 0 25 hm5C_associated_SNPs_101805 0 0 1 0 0 Ribosome 0.500231643713013 0.500231644481779 0 1.53753165754722e-09 hm5C_site_54950 DeepMRMD:0;iRNA_m5C:1.53753165754722e-09 54951 chr1 10510348 10510348 1 + T G rs556873478 10510345 + 10510325 10510365 41 CACGGCCACCGCTGCCCTGCCCCTGGAGGGTGGCCCCACCG CACGGCCACCGCTGCCCTGCCCCGGGAGGGTGGCCCCACCG < 41bp 0.43886622807331 0.80215595271009 0.33761072 0.77361953 prediction 0.60431190542018 Functional Gain - CORT ENSG00000241563 CDS Human protein_coding chr1:10510345 chr1:10510348 nonsynonymous SNV 0.203 2 24 hm5C_associated_SNPs_101806 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643920874 0.54723906 0 hm5C_site_54951 DeepMRMD:0.54723906;iRNA_m5C:0 54952 chr13 113798336 113798336 1 + C A UCEC 113798332 + 113798312 113798352 41 TGCTTGACTTCAACCAGACGCAGCCTGAGAGGGGCGACAAC TGCTTGACTTCAACCAGACGCAGCATGAGAGGGGCGACAAC < 41bp 0.399153036169156 0.802154198872404 0.0057125688 0.019113928 prediction 0.604308397744809 Functional Gain - F10 ENSG00000126218 CDS Human protein_coding chr13:113798332 chr13:113798336 nonsynonymous SNV 0.008 2 25 hm5C_associated_SNPs_101807 0 0 1 0 1 nucleus 0.500231644420137 0.50023136379784 0 0 hm5C_site_54952 DeepMRMD:0;iRNA_m5C:0 54953 chr12 14927825 14927825 1 + C A rs6645 14927821 + 14927801 14927841 41 CGCCGCCCTCAGGGAGCTGGCTCCCCCAGCAAAGGCCCTTT CGCCGCCCTCAGGGAGCTGGCTCCACCAGCAAAGGCCCTTT < 41bp 0.584523954343703 0.88665508620607 0.11528745 0.85257256 prediction 0.604262263724736 Functional Gain - H2AFJ ENSG00000246705 UTR3 Human protein_coding chr12:14927821 chr12:14927825 . . 0 25 hm5C_associated_SNPs_101808 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643930233 0.70514512 1.82807102788729e-11 hm5C_site_54953 DeepMRMD:0.70514512;iRNA_m5C:1.82807102788729e-11 54954 chr1 2938642 2938642 1 + T G COAD 2938640 + 2938620 2938660 41 GCAGAAGTCATGTTCGAGAACTTCGGCGTGCCCGCTTTCTA GCAGAAGTCATGTTCGAGAACTGCGGCGTGCCCGCTTTCTA < 41bp 0.487645667709662 0.802126361714527 0.07245183 0.20795766 prediction 0.604252723429055 Functional Gain - ACTRT2 ENSG00000169717 CDS Human protein_coding chr1:2938640 chr1:2938642 nonsynonymous SNV 0.018 5 23 hm5C_associated_SNPs_101809 0 0 0 0 0 unknown 0.500231476329674 0.500231595711667 0 2.38763986359913e-07 hm5C_site_54954 DeepMRMD:0;iRNA_m5C:2.38763986359913e-07 54955 chr22 50312459 50312459 1 + T G rs562220912 50312457 + 50312437 50312477 41 CCGCGCTGGGGCTCCTGCCGCTTCTGCTGCTGCTGCCGCCC CCGCGCTGGGGCTCCTGCCGCTGCTGCTGCTGCTGCCGCCC < 41bp 0.522183147327775 0.824300265826541 0.33667374 0.7595429 prediction 0.604234236997531 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50312457 chr22:50312459 synonymous SNV . 0 23 hm5C_associated_SNPs_101810 0 0 1 0 1 Ribosome 0.500231643874432 0.500231630042825 0.5190858 0 hm5C_site_54955 DeepMRMD:0.5190858;iRNA_m5C:0 54956 chr1 104160612 104160612 1 + C A UCEC 104160608 + 104160588 104160628 41 AATGAAAATGTTGCAATTTACAACCCTTTCAGACCTTGGTG AATGAAAATGTTGCAATTTACAACACTTTCAGACCTTGGTG < 41bp 0.427532243203849 0.802114414246443 0.33525464 0.44398376 prediction 0.604228828492886 Functional Gain - AMY2A ENSG00000243480 CDS Human protein_coding chr1:104160608 chr1:104160612 nonsynonymous SNV 0.068 4 25 hm5C_associated_SNPs_101811 0 0 0 0 1 exosome 0.500231643921093 0.50023164460163 0 1.36107569659316e-09 hm5C_site_54956 DeepMRMD:0;iRNA_m5C:1.36107569659316e-09 54957 chr9 109734366 109734366 1 + C A LUSC 109734362 + 109734342 109734382 41 GCTGCCCTGGCAAGGAACAACAGCCGTGTTAGCCCTGTGCC GCTGCCCTGGCAAGGAACAACAGCAGTGTTAGCCCTGTGCC < 41bp 0.404006363431203 0.802106476791112 0.3184646 0.52234656 prediction 0.604212953582224 Functional Gain - ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109734362 chr9:109734366 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_101812 0 0 0 0 1 exosome 0.500231643920796 0.500231643921069 0.04469312 5.47339951140202e-13 hm5C_site_54957 DeepMRMD:0.04469312;iRNA_m5C:5.47339951140202e-13 54958 chr8 11291633 11291633 1 + C A rs192500917 11291629 + 11291609 11291649 41 TGTGAAGAAAGAAACGCAAACACCCCTAGGAACCAGGTTGG TGTGAAGAAAGAAACGCAAACACCACTAGGAACCAGGTTGG < 41bp 0.439201664058425 0.802102557544174 0.068632245 0.13749409 prediction 0.604205115088349 Functional Gain - FAM167A-AS1 ENSG00000184608 UTR5 Human antisense chr8:11291629 chr8:11291633 . . 0 25 hm5C_associated_SNPs_101813 0 0 0 1 1 unknown 0.500231643920477 0.500229983896379 0 0 hm5C_site_54958 DeepMRMD:0;iRNA_m5C:0 54959 chr3 149374859 149374859 1 + C A UCEC 149374855 + 149374835 149374875 41 AGCGGACATGCTGGGCACCCCCAGCCAGTCGAGGCCCCGGG AGCGGACATGCTGGGCACCCCCAGACAGTCGAGGCCCCGGG < 41bp 0.557359566483409 0.859434399872924 0.046913505 0.084130675 prediction 0.60414966677903 Functional Gain - WWTR1 ENSG00000018408 CDS Human protein_coding chr3:149374855 chr3:149374859 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_101814 0 0 0 0 0 Endoplasmic reticulum 0.500231650327203 0.500231646540834 0 0 hm5C_site_54959 DeepMRMD:0;iRNA_m5C:0 54960 chr1 155148098 155148098 1 + C A rs547877394 155148094 + 155148074 155148114 41 CCGCAGAACTCTCCCCAAGCCAGACCGCCTGGACCGGCTGC CCGCAGAACTCTCCCCAAGCCAGAACGCCTGGACCGGCTGC < 41bp 0.43972767142344 0.802062613189092 0.295812 0.83530366 prediction 0.604125226378183 Functional Gain - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155148094 chr1:155148098 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_101815 0 0 0 0 1 nucleolus 0.500231643921092 0.500231643921092 0.67060732 0 hm5C_site_54960 DeepMRMD:0.67060732;iRNA_m5C:0 54961 chr1 158913641 158913641 1 + T G rs559228707 158913638 + 158913618 158913658 41 GGATAAAACAGGAAGTATGGCTGTAGTAGGAAAAGGAGAAT GGATAAAACAGGAAGTATGGCTGGAGTAGGAAAAGGAGAAT < 41bp 0.561794279972437 0.863854946720112 0.24647784 0.24986604 prediction 0.60412133349535 Functional Gain - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158913638 chr1:158913641 nonsynonymous SNV 0.003 3 24 hm5C_associated_SNPs_101816 0 0 0 0 1 exosome 0.500231643921092 0.500231644334825 0 8.27465873598499e-10 hm5C_site_54961 DeepMRMD:0;iRNA_m5C:8.27465873598499e-10 54962 chr19 58189800 58189800 1 + C A BLCA 58189796 + 58189776 58189816 41 GTGATGGGAGCAGGGTGTATCTCTCAACCAGAGCAGTCCTC GTGATGGGAGCAGGGTGTATCTCTAAACCAGAGCAGTCCTC < 41bp 0.418320955629213 0.802054679675815 0.27047452 0.9422994 prediction 0.60410935935163 Functional Gain - ZSCAN4 ENSG00000180532 CDS Human protein_coding chr19:58189796 chr19:58189800 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101817 0 0 0 0 0 exosome 0.50023164392109 0.500231643925111 0.8845988 8.04067923354523e-12 hm5C_site_54962 DeepMRMD:0.8845988;iRNA_m5C:8.04067923354523e-12 54963 chr18 19749546 19749546 1 + C A rs572370725 19749542 + 19749522 19749562 41 TATTCACCAGCAGCGCGGCGCAGACCCCGGACTCGCGCTCG TATTCACCAGCAGCGCGGCGCAGAACCCGGACTCGCGCTCG < 41bp 0.504540082307717 0.806564674686989 0.3632642 0.83337885 prediction 0.604049184758544 Functional Gain - GATA6 ENSG00000141448 UTR5 Human protein_coding chr18:19749542 chr18:19749546 . . 0 25 hm5C_associated_SNPs_101818 0 0 0 0 1 Cytosol 0.500231643921094 0.500231643916723 0.6667577 0 hm5C_site_54963 DeepMRMD:0.6667577;iRNA_m5C:0 54964 chr2 74042540 74042540 1 + C A LUSC 74042536 + 74042516 74042556 41 CTGTAGAAATCCCCGATATTCACCCGCTTCTGGCCTGCATT CTGTAGAAATCCCCGATATTCACCAGCTTCTGGCCTGCATT < 41bp 0.403669577731065 0.801978410646155 0.09929645 0.14100179 prediction 0.60395682129231 Functional Gain - C2orf78 ENSG00000187833 CDS Human protein_coding chr2:74042536 chr2:74042540 nonsynonymous SNV 0.060 0 25 hm5C_associated_SNPs_101819 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_54964 DeepMRMD:0;iRNA_m5C:0 54965 chr1 150484990 150484990 1 + C A LUAD 150484986 + 150484966 150485006 41 GACATCTTGACCATTGACATCGGTCGAGTCACCCCCAACCT GACATCTTGACCATTGACATCGGTAGAGTCACCCCCAACCT < 41bp 0.40120857463668 0.801976577495502 0.6244641 0.8332801 prediction 0.603953154991004 Functional Gain - ECM1 ENSG00000143369 CDS Human protein_coding chr1:150484986 chr1:150484990 synonymous SNV . 0 25 hm5C_associated_SNPs_101820 0 0 1 0 1 Endoplasmic reticulum 0.500231643921341 0.500231643920836 0.417632 0 hm5C_site_54965 DeepMRMD:0.417632;iRNA_m5C:0 54966 chr2 119735500 119735500 1 + T G LUSC 119735498 + 119735478 119735518 41 ACTAAGGGAGAGAAAGGAGACCTGGGTCTCCCAGGTGAGGG ACTAAGGGAGAGAAAGGAGACCGGGGTCTCCCAGGTGAGGG < 41bp 0.468960774522219 0.801948275633408 0.23089388 0.43408728 prediction 0.603896551266815 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735498 chr2:119735500 nonsynonymous SNV 0.929 2 23 hm5C_associated_SNPs_101821 0 0 0 0 2 exosome 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_54966 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 54967 chr3 38038580 38038580 1 + T A GBM 38038576 + 38038556 38038596 41 TGGCTCTGGCAGGTGGAGCTCTCCTGGAACAGCTTTAATAA TGGCTCTGGCAGGTGGAGCTCTCCAGGAACAGCTTTAATAA < 41bp 0.472081174195229 0.801942090310733 0.4208913 0.952042 prediction 0.603884180621467 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38038576 chr3:38038580 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_101822 0 0 1 0 2 chromatin 0.500231643921092 0.500231643921094 0.904084 2.88657986402541e-15 hm5C_site_54967 DeepMRMD:0.904084;iRNA_m5C:2.88657986402541e-15 54968 chr5 140554470 140554470 1 + C A LUAD 140554466 + 140554446 140554486 41 CCCCGGACCAGGCCAACTCGCTCACCGTCTACCTGGTGGTG CCCCGGACCAGGCCAACTCGCTCAACGTCTACCTGGTGGTG < 41bp 0.417007467311555 0.801937268957577 0.20865643 0.6532589 prediction 0.603874537915153 Functional Gain - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140554466 chr5:140554470 nonsynonymous SNV 0.337 3 25 hm5C_associated_SNPs_101823 0 0 0 0 0 exosome 0.50023164392057 0.500231643921092 0.3065178 1.04516395538212e-12 hm5C_site_54968 DeepMRMD:0.3065178;iRNA_m5C:1.04516395538212e-12 54969 chr2 88828704 88828704 1 + C A UCEC 88828700 + 88828680 88828720 41 TGCCAAAGACCTGGGACTCCCCGGCTTCTTCCCATCACAGG TGCCAAAGACCTGGGACTCCCCGGATTCTTCCCATCACAGG < 41bp 0.57589904872196 0.877821064836397 0.10508081 0.42588025 prediction 0.603844032228875 Functional Gain - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88828700 chr2:88828704 synonymous SNV . 0 25 hm5C_associated_SNPs_101824 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0 0 hm5C_site_54969 DeepMRMD:0;iRNA_m5C:0 54970 chr14 37641838 37641838 1 + A C rs111430783 37641841 - 37641821 37641861 41 AGACAAAGCCTGAGCCGCTGCGGTGAGCCAACCCAAACCCA AGACAAAGCCTGAGCCGCTGCGGGGAGCCAACCCAAACCCA < 41bp 0.537428798829581 0.839321963121165 0.35025018 0.8569931 prediction 0.603786328583167 Functional Gain - SLC25A21-AS1 ENSG00000258708 CDS Human antisense chr14:37641841 chr14:37641838 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_101825 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0.7139862 0 hm5C_site_54970 DeepMRMD:0.7139862;iRNA_m5C:0 54971 chr22 21821920 21821920 1 + C A UCEC 21821916 + 21821896 21821936 41 GAGCGGAGGTGCGCGGGGAACGCCCCTCTACCTGGCGGGCG GAGCGGAGGTGCGCGGGGAACGCCACTCTACCTGGCGGGCG < 41bp 0.547463364919203 0.849351670904731 0.33686128 0.82824534 prediction 0.603776611971057 Functional Gain - TMEM191C ENSG00000206140 ncRNA_exonic Human protein_coding chr22:21821916 chr22:21821920 . . 0 25 hm5C_associated_SNPs_101826 0 0 0 0 0 exosome 0.500231668888765 0.500231643921094 0.65649068 0 hm5C_site_54971 DeepMRMD:0.65649068;iRNA_m5C:0 54972 chr16 67911537 67911537 1 + T G SKCM 67911534 + 67911514 67911554 41 CTGTGAGGAGAGCAGCCCAACAGTGGCCCTGCTGCATGAAG CTGTGAGGAGAGCAGCCCAACAGGGGCCCTGCTGCATGAAG < 41bp 0.467162146486532 0.80186150643588 0.20403641 0.83609474 prediction 0.603723012871759 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67911534 chr16:67911537 nonsynonymous SNV 0.976 2 24 hm5C_associated_SNPs_101827 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.67218948 0 hm5C_site_54972 DeepMRMD:0.67218948;iRNA_m5C:0 54973 chr17 37826284 37826284 1 + C A COAD 37826280 + 37826260 37826300 41 CCATCGACGTGCACCAGCCCCAGCCCCTGGGTGCTGGGAGC CCATCGACGTGCACCAGCCCCAGCACCTGGGTGCTGGGAGC < 41bp 0.577657011733969 0.879486701427278 0.311661 0.49982405 prediction 0.603659379386618 Functional Gain - PNMT ENSG00000141744 CDS Human protein_coding chr17:37826280 chr17:37826284 nonsynonymous SNV 0.699 4 25 hm5C_associated_SNPs_101828 0 0 0 0 1 Cytosol 0.500231643921495 0.500231643921093 0 0 hm5C_site_54973 DeepMRMD:0;iRNA_m5C:0 54974 chr11 55579069 55579069 1 + C A UCEC 55579065 + 55579045 55579085 41 TATGGAGTCACGTTGTTAGCCAACCTGGGCATGATTGCACT TATGGAGTCACGTTGTTAGCCAACATGGGCATGATTGCACT < 41bp 0.571189943638027 0.87301258476046 0.45554113 0.35616222 prediction 0.603645282244865 Functional Gain - OR5L1 ENSG00000186117 CDS Human other chr11:55579065 chr11:55579069 nonsynonymous SNV 0.010 3 25 hm5C_associated_SNPs_101829 0 0 0 0 0 unknown 0.500231643912794 0.500231687737894 0 8.76502002089552e-08 hm5C_site_54974 DeepMRMD:0;iRNA_m5C:8.76502002089552e-08 54975 chr2 105858680 105858680 1 + T G KIRP 105858678 + 105858658 105858698 41 TGGTTTTTTGTCCTGGAGGGCGTGGCCATCCTGCTCATCAT TGGTTTTTTGTCCTGGAGGGCGGGGCCATCCTGCTCATCAT < 41bp 0.54226123290325 0.844062752190839 0.27911204 0.8592419 prediction 0.603603038575179 Functional Gain - GPR45 ENSG00000135973 CDS Human protein_coding chr2:105858678 chr2:105858680 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_101830 0 0 1 0 0 unknown 0.500231643925399 0.500231643921092 0.7184838 0 hm5C_site_54975 DeepMRMD:0.7184838;iRNA_m5C:0 54976 chr11 118404282 118404282 1 + T G rs536963695 118404279 + 118404259 118404299 41 AACCAAAGGTAGGCCAGGGACACTGGGGGCAGTGTGGATGA AACCAAAGGTAGGCCAGGGACACGGGGGGCAGTGTGGATGA < 41bp 0.447236737222658 0.801792763930408 0.53980386 0.58157223 prediction 0.603585527860816 Functional Gain - TMEM25 ENSG00000149582 intronic Human protein_coding chr11:118404279 chr11:118404282 . . 0 24 hm5C_associated_SNPs_101831 0 0 0 0 0 Nucleus 0.500231643146987 0.500231644127318 0.08353674 1.9606618550938e-09 hm5C_site_54976 DeepMRMD:0.08353674;iRNA_m5C:1.9606618550938e-09 54977 chr9 119097224 119097224 1 + C A LUAD 119097220 + 119097200 119097240 41 GCCAGCCCTTCTACCACAGCCAGGCGGTACGTGTGAGCTTC GCCAGCCCTTCTACCACAGCCAGGAGGTACGTGTGAGCTTC < 41bp 0.413542560763864 0.801792125328386 0.3818196 0.4484915 prediction 0.603584250656771 Functional Gain - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119097220 chr9:119097224 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_101832 0 0 0 0 1 Endoplasmic reticulum 0.500231634767394 0.500231643912323 0 1.82898580725066e-08 hm5C_site_54977 DeepMRMD:0;iRNA_m5C:1.82898580725066e-08 54978 chr20 377140 377140 1 + C A UCEC 377136 + 377116 377156 41 CCTGCCCGCTGTCTGGTTCGCTGCCTCCTTCGTCGGGAGCC CCTGCCCGCTGTCTGGTTCGCTGCATCCTTCGTCGGGAGCC < 41bp 0.410645565616903 0.801790634728501 0.36169222 0.37481415 prediction 0.603581269457002 Functional Gain - TRIB3 ENSG00000101255 CDS Human protein_coding chr20:377136 chr20:377140 nonsynonymous SNV 0.970 1 25 hm5C_associated_SNPs_101833 0 0 1 0 0 Ribosome 0.500231643921093 0.500231662766317 0 3.76904485399621e-08 hm5C_site_54978 DeepMRMD:0;iRNA_m5C:3.76904485399621e-08 54979 chr13 52440130 52440130 1 + A C rs1054515 52440133 - 52440113 52440153 41 TTCGAGCATCTGCTCTCCGGCAATGTGGCCATTGTTCTCCA TTCGAGCATCTGCTCTCCGGCAAGGTGGCCATTGTTCTCCA < 41bp 0.446511260761351 0.801789148653932 0.06314805 0.36790574 prediction 0.603578297307863 Functional Gain - CCDC70 ENSG00000123171 CDS Human protein_coding chr13:52440133 chr13:52440130 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_101834 0 0 0 0 0 unknown 0.500231550018344 0.500231775206529 0 4.5037637175227e-07 hm5C_site_54979 DeepMRMD:0;iRNA_m5C:4.5037637175227e-07 54980 chr19 41096894 41096894 1 + C A LUAD 41096890 + 41096870 41096910 41 TTACTTCCTCAGCCTCCACTCAGCCTCCAGCAACACCTCCT TTACTTCCTCAGCCTCCACTCAGCATCCAGCAACACCTCCT < 41bp 0.420531119704855 0.801750250716043 0.0841136 0.23842266 prediction 0.603500501432085 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41096890 chr19:41096894 synonymous SNV . 0 25 hm5C_associated_SNPs_101835 0 0 0 0 1 Ribosome 0.5002316381766 0.500231643794812 0 1.12364242355056e-08 hm5C_site_54980 DeepMRMD:0;iRNA_m5C:1.12364242355056e-08 54981 chr1 150459936 150459936 1 + T G SKCM 150459933 + 150459913 150459953 41 TGGTGTGAAGGAACATGGCCCTGTATCAGAGGTGGCGGTGT TGGTGTGAAGGAACATGGCCCTGGATCAGAGGTGGCGGTGT < 41bp 0.43400031244019 0.801725228266147 0.02292177 0.09990564 prediction 0.603450456532294 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150459933 chr1:150459936 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_101836 0 0 1 0 1 Ribosome 0.5002316439229 0.500231764015416 0 2.40185030975226e-07 hm5C_site_54981 DeepMRMD:0;iRNA_m5C:2.40185030975226e-07 54982 chr17 43246564 43246564 1 + G T UCEC 43246568 - 43246548 43246588 41 GTGTTTCTTCCGGGCCAGCACAGCCTCCGCTGAGCAGCCCC GTGTTTCTTCCGGGCCAGCACAGCATCCGCTGAGCAGCCCC < 41bp 0.573319039863663 0.875039641972036 0.6734487 0.6522441 prediction 0.603441204216745 Functional Gain - HEXIM2 ENSG00000168517 CDS Human protein_coding chr17:43246568 chr17:43246564 nonsynonymous SNV 0.103 1 25 hm5C_associated_SNPs_101837 0 0 0 0 0 chromatin 0.500231643921417 0.500231643921092 0 0 hm5C_site_54982 DeepMRMD:0;iRNA_m5C:0 54983 chr1 248685435 248685435 1 + C A LIHC 248685431 + 248685411 248685451 41 CCTCCCTAATTCAGTGCTCCCTCACTGTGCAGCTGCCCCTC CCTCCCTAATTCAGTGCTCCCTCAATGTGCAGCTGCCCCTC < 41bp 0.587069629207559 0.888755861596452 0.031520873 0.894559 prediction 0.603372464777787 Functional Gain - OR2G6 ENSG00000188558 CDS Human protein_coding chr1:248685431 chr1:248685435 nonsynonymous SNV 0.910 3 25 hm5C_associated_SNPs_101838 0 0 0 0 0 unknown 0.500231648937337 0.500231643921092 0.789118 0 hm5C_site_54983 DeepMRMD:0.789118;iRNA_m5C:0 54984 chrX 150869436 150869436 1 + C A rs149940899 150869432 + 150869412 150869452 41 AGAGAGCAGCAGTGAGGAGGCCAGCGTGTCTTACAGTGACC AGAGAGCAGCAGTGAGGAGGCCAGAGTGTCTTACAGTGACC < 41bp 0.422970477697887 0.801665928184516 0.43141267 0.41021323 prediction 0.603331856369033 Functional Gain - PRRG3 ENSG00000130032 CDS Human protein_coding chrX:150869432 chrX:150869436 nonsynonymous SNV 0.990 3 25 hm5C_associated_SNPs_101839 0 0 0 0 0 exosome 0.500231644112335 0.50023164306917 0 0 hm5C_site_54984 DeepMRMD:0;iRNA_m5C:0 54985 chr4 15444181 15444181 1 + C A LIHC 15444177 + 15444157 15444197 41 GCTAATAAGCATCTGGCAATCGGACTGGTACACAATGGGCA GCTAATAAGCATCTGGCAATCGGAATGGTACACAATGGGCA < 41bp 0.426647016707422 0.801661965695287 0.7159491 0.8646749 prediction 0.603323931390574 Functional Gain - C1QTNF7 ENSG00000163145 CDS Human protein_coding chr4:15444177 chr4:15444181 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_101840 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.2974516 0 hm5C_site_54985 DeepMRMD:0.2974516;iRNA_m5C:0 54986 chr21 31136207 31136207 1 + T G rs16984911 31136204 + 31136184 31136224 41 TTCACTCTGGCATACTCTCTCAGTGTGGAAGCTGCTGATTC TTCACTCTGGCATACTCTCTCAGGGTGGAAGCTGCTGATTC < 41bp 0.462532324335809 0.801653679859177 0.8064686 0.9409849 prediction 0.603307359718354 Functional Gain - GRIK1-AS1 ENSG00000174680 ncRNA_exonic Human antisense chr21:31136204 chr21:31136207 . . 0 24 hm5C_associated_SNPs_101841 0 0 0 0 0 unknown 0.5002316440087 0.500231643921092 0.2690326 0 hm5C_site_54986 DeepMRMD:0.2690326;iRNA_m5C:0 54987 chr1 43825014 43825014 1 + T A BLCA 43825010 + 43824990 43825030 41 CCGCAGGCCCGGCCCCCTCACCCATGCGGGCCGCCAACCGA CCGCAGGCCCGGCCCCCTCACCCAAGCGGGCCGCCAACCGA < 41bp 0.500258491781076 0.801890959844648 0.110756546 0.086859554 prediction 0.603264936127144 Functional Gain - CDC20 ENSG00000117399 CDS Human protein_coding chr1:43825010 chr1:43825014 nonsynonymous SNV 0.920 1 25 hm5C_associated_SNPs_101842 0 0 1 0 1 Ribosome 0.500231643921265 0.500231643921092 0 0 hm5C_site_54987 DeepMRMD:0;iRNA_m5C:0 54988 chr10 129537198 129537198 1 + T A UCEC 129537194 + 129537174 129537214 41 CCGCCGGCTTCCGCCTCAGTCACCTCCTCTACAGCCGGGAA CCGCCGGCTTCCGCCTCAGTCACCACCTCTACAGCCGGGAA < 41bp 0.497059314705111 0.801595756624961 0.17004922 0.105103284 prediction 0.603191513249922 Functional Gain - FOXI2 ENSG00000186766 CDS Human protein_coding chr10:129537194 chr10:129537198 nonsynonymous SNV 0.047 3 25 hm5C_associated_SNPs_101843 0 0 0 0 0 exosome 0.50023175904133 0.500231645222202 0 0 hm5C_site_54988 DeepMRMD:0;iRNA_m5C:0 54989 chrX 66766153 66766153 1 + C A STAD 66766149 + 66766129 66766169 41 CCCCATCCCCACGCTCGCATCAAGCTGGAGAACCCGCTGGA CCCCATCCCCACGCTCGCATCAAGATGGAGAACCCGCTGGA < 41bp 0.43768880439291 0.801560371527513 0.285232 0.57251495 prediction 0.603120743055025 Functional Gain - AR ENSG00000169083 CDS Human protein_coding chrX:66766149 chrX:66766153 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_101844 0 0 0 0 0 Endoplasmic reticulum 0.500230667604885 0.500226611904408 0.1450299 0 hm5C_site_54989 DeepMRMD:0.1450299;iRNA_m5C:0 54990 chr7 75615047 75615047 1 + C A CESC 75615043 + 75615023 75615063 41 CGTGCGCTGGTGCCCATGTTCGTGCGCAAGTCCCAGTTCCG CGTGCGCTGGTGCCCATGTTCGTGAGCAAGTCCCAGTTCCG < 41bp 0.585233027040657 0.886792886154627 0.90881497 0.90987736 prediction 0.603119718227939 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75615043 chr7:75615047 nonsynonymous SNV 0.997 5 25 hm5C_associated_SNPs_101845 0 0 1 0 0 Nucleus 0.500231642248014 0.500231641664977 0.00212477999999994 0 hm5C_site_54990 DeepMRMD:0.00212477999999994;iRNA_m5C:0 54991 chr15 96875642 96875642 1 + T G HNSC 96875640 + 96875620 96875660 41 TGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAG TGCGAGGGCTGCAAGAGCTTCTGCAAGCGCAGCGTGCGGAG < 41bp 0.507390535183192 0.808945441652621 0.6656315 0.5555652 prediction 0.603109812938858 Functional Gain - NR2F2 ENSG00000185551 CDS Human protein_coding chr15:96875640 chr15:96875642 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_101846 0 0 1 0 0 Cytoplasm 0.500231643746009 0.500231643861254 0 2.3049029351796e-10 hm5C_site_54991 DeepMRMD:0;iRNA_m5C:2.3049029351796e-10 54992 chr1 114524684 114524684 1 + T G rs541644206 114524681 + 114524661 114524701 41 CCCCAGACCCAGGGCTCTAACCTTGTATGCGGGCAGGCCCA CCCCAGACCCAGGGCTCTAACCTGGTATGCGGGCAGGCCCA < 41bp 0.452769113654689 0.801533374213289 0.7232842 0.9054709 prediction 0.603066748426578 Functional Gain - OLFML3 ENSG00000116774 UTR3 Human protein_coding chr1:114524681 chr1:114524684 . . 0 24 hm5C_associated_SNPs_101847 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0.3643734 0 hm5C_site_54992 DeepMRMD:0.3643734;iRNA_m5C:0 54993 chr18 21736278 21736278 1 + T A rs150107485 21736274 + 21736254 21736294 41 CTTGCAGGATGAACAAGAACCTCCTGCTTATGATCAAGCTC CTTGCAGGATGAACAAGAACCTCCAGCTTATGATCAAGCTC < 41bp 0.533220060272079 0.834747901756657 0.11458704 0.73107177 prediction 0.603055682969157 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21736274 chr18:21736278 synonymous SNV . 0 25 hm5C_associated_SNPs_101848 0 0 0 3 0 Nucleus 0.500238171918751 0.500235409925706 0.46214354 0 hm5C_site_54993 DeepMRMD:0.46214354;iRNA_m5C:0 54994 chr7 129919446 129919446 1 + C A LUAD 129919442 + 129919422 129919462 41 ATTACCCTCCACAGCTATTCCCAGCTGCTGATGTTCCCCTA ATTACCCTCCACAGCTATTCCCAGATGCTGATGTTCCCCTA < 41bp 0.396648733784594 0.801510547957906 0.60316 0.91364276 prediction 0.603021095915812 Functional Gain - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129919442 chr7:129919446 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101849 0 0 0 0 1 exosome 0.500231643885211 0.500231643921094 0.62096552 7.17659265347947e-11 hm5C_site_54994 DeepMRMD:0.62096552;iRNA_m5C:7.17659265347947e-11 54995 chr6 26204962 26204962 1 + T G UCEC 26204959 + 26204939 26204979 41 CTGCGAGATAACATCCAGGGCATTACCAAGCCTGCCATCCG CTGCGAGATAACATCCAGGGCATGACCAAGCCTGCCATCCG < 41bp 0.445774620080919 0.801504052904941 0.13140401 0.15478697 prediction 0.603008105809883 Functional Gain - HIST1H4E ENSG00000198518 CDS Human other chr6:26204959 chr6:26204962 nonsynonymous SNV 0.222 0 24 hm5C_associated_SNPs_101850 0 0 1 0 0 Nucleus 0.500231646782102 0.500231644059998 0 0 hm5C_site_54995 DeepMRMD:0;iRNA_m5C:0 54996 chr14 62249051 62249051 1 + T A GBM 62249047 + 62249027 62249067 41 TGGTCAAGGGCAAGTCAAAGCAACTAGGAAAAAAGAGAAGA TGGTCAAGGGCAAGTCAAAGCAACAAGGAAAAAAGAGAAGA < 41bp 0.50273716876159 0.804233413827739 0.38487887 0.35646656 prediction 0.602992490132299 Functional Gain - SNAPC1 ENSG00000023608 CDS Human protein_coding chr14:62249047 chr14:62249051 synonymous SNV . 0 25 hm5C_associated_SNPs_101851 0 0 1 0 2 chromatin 0.500180776074976 0.500187790411795 0 1.40286736376449e-05 hm5C_site_54996 DeepMRMD:0;iRNA_m5C:1.40286736376449e-05 54997 chr12 27933782 27933782 1 + C A COAD 27933778 + 27933758 27933798 41 GTTCCACCTCCTGGGGTCTCCTCCCCAAGCTCCAGGGGATG GTTCCACCTCCTGGGGTCTCCTCCACAAGCTCCAGGGGATG < 41bp 0.396911584677301 0.801496236446138 0.41438168 0.9468764 prediction 0.602992472892275 Functional Gain - KLHL42 ENSG00000087448 CDS Human protein_coding chr12:27933778 chr12:27933782 synonymous SNV . 0 25 hm5C_associated_SNPs_101852 0 0 1 0 0 Ribosome 0.499994555068766 0.500231649926605 0.8937528 0.000463299853210364 hm5C_site_54997 DeepMRMD:0.8937528;iRNA_m5C:0.000463299853210364 54998 chr5 140731379 140731379 1 + C A LUAD 140731375 + 140731355 140731395 41 GTGTTCGCGCAGCGCGCCTTCGACCACGAGCAGCTGCGCGC GTGTTCGCGCAGCGCGCCTTCGACAACGAGCAGCTGCGCGC < 41bp 0.416359612485289 0.801486227040038 0.37937415 0.66213524 prediction 0.602972454080077 Functional Gain - PCDHGB1 ENSG00000254221 CDS Human protein_coding chr5:140731375 chr5:140731379 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_101853 0 0 0 0 0 exosome 0.500231649062724 0.500231643938593 0.32427048 0 hm5C_site_54998 DeepMRMD:0.32427048;iRNA_m5C:0 54999 chr10 75520505 75520505 1 + T A LUSC 75520501 + 75520481 75520521 41 ACCAGCCCGGGGCCCTCAGTCTAATTATGGAGGCCCCTACC ACCAGCCCGGGGCCCTCAGTCTAAATATGGAGGCCCCTACC < 41bp 0.512324077832067 0.813784705578374 0.23585904 0.26859063 prediction 0.602921255492615 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75520501 chr10:75520505 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_101854 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_54999 DeepMRMD:0;iRNA_m5C:0 55000 chr6 18218071 18218071 1 + T G LGG 18218068 + 18218048 18218088 41 GGTGGAAGTGGGGAGGCCTACGATATCATTGCTGAAGACAT GGTGGAAGTGGGGAGGCCTACGAGATCATTGCTGAAGACAT < 41bp 0.569262740638646 0.870691605184242 0.3408025 0.8375282 prediction 0.602857729091193 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18218068 chr6:18218071 nonsynonymous SNV 0.770 3 24 hm5C_associated_SNPs_101855 0 0 1 0 2 Cytosol 0.500231643921092 0.500231644049193 0.6750564 2.56201948545254e-10 hm5C_site_55000 DeepMRMD:0.6750564;iRNA_m5C:2.56201948545254e-10 55001 chr22 39427803 39427803 1 + T A LAML 39427799 + 39427779 39427819 41 CTACGAGGTCACCTGGTACACATCTTGGAGCCCTTGCCCAG CTACGAGGTCACCTGGTACACATCATGGAGCCCTTGCCCAG < 41bp 0.512535318138111 0.813900263697876 0.04622087 0.0671784 prediction 0.602729891119531 Functional Gain - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39427799 chr22:39427803 synonymous SNV . 0 25 hm5C_associated_SNPs_101856 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 8.88178419700125e-16 hm5C_site_55001 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 55002 chr10 38739351 38739351 1 + C A rs539684289 38739347 + 38739327 38739367 41 TCACACCGGCCCCTCCCACGCTGACAGGTCAGCCTCAGCTC TCACACCGGCCCCTCCCACGCTGAAAGGTCAGCCTCAGCTC < 41bp 0.450891840126708 0.80133120996381 0.05614406 0.1486345 prediction 0.60266241992762 Functional Gain - LINC00999 ENSG00000225119;ENSG00000228882 intergenic Human other chr10:38739347 chr10:38739351 . . 0 25 hm5C_associated_SNPs_101857 0 0 1 0 0 nucleoplasm 0.500231644359319 0.500231643511872 0 0 hm5C_site_55002 DeepMRMD:0;iRNA_m5C:0 55003 chr12 106786915 106786915 1 + T A SKCM 106786911 + 106786891 106786931 41 TGGAAGAGTGCCAGAAAGCTCAGATTTTCACACAGATGCAG TGGAAGAGTGCCAGAAAGCTCAGAATTTCACACAGATGCAG < 41bp 0.498542041149038 0.801329170281955 0.2696416 0.36328924 prediction 0.602658340563909 Functional Gain - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106786911 chr12:106786915 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_101858 0 0 0 0 1 chromatin 0.500231643921588 0.500231643973324 0 1.03471453627435e-10 hm5C_site_55003 DeepMRMD:0;iRNA_m5C:1.03471453627435e-10 55004 chrX 24483405 24483405 1 + T G rs7891330 24483402 + 24483382 24483422 41 GGAAGCCGCGGGCGGCCCGCCGCTGTCCTGGAGCTGCTGCT GGAAGCCGCGGGCGGCCCGCCGCGGTCCTGGAGCTGCTGCT < 41bp 0.54223620946368 0.843559897396235 0.100735635 0.74152935 prediction 0.602647375865109 Functional Gain - PDK3 ENSG00000067992 UTR5 Human protein_coding chrX:24483402 chrX:24483405 . . 0 24 hm5C_associated_SNPs_101859 0 0 1 0 0 exosome 0.500231643920391 0.500231643921092 0.4830587 1.40265576931142e-12 hm5C_site_55004 DeepMRMD:0.4830587;iRNA_m5C:1.40265576931142e-12 55005 chr19 15198090 15198090 1 + C A UCEC 15198086 + 15198066 15198106 41 TTCAACCTCTCACTCGTTGACACCCTATTATCCTCCACCAC TTCAACCTCTCACTCGTTGACACCATATTATCCTCCACCAC < 41bp 0.40974838763013 0.801318650551126 0.06604114 0.07344675 prediction 0.602637301102251 Functional Gain - OR1I1 ENSG00000094661 CDS Human protein_coding chr19:15198086 chr19:15198090 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_101860 0 0 0 0 0 unknown 0.500231642123548 0.500231639450322 0 0 hm5C_site_55005 DeepMRMD:0;iRNA_m5C:0 55006 chr5 1225626 1225626 1 + T A rs7728667 1225622 + 1225602 1225642 41 GCCCCAGAACCGGACCCGGCCGCCTGCGACCTCGGGGATGA GCCCCAGAACCGGACCCGGCCGCCAGCGACCTCGGGGATGA < 41bp 0.505777333300516 0.807070568982114 0.2149438 0.38369668 prediction 0.602586471363196 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1225622 chr5:1225626 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101861 0 0 0 0 0 unknown 0.500231643921091 0.500231643920753 0 0 hm5C_site_55006 DeepMRMD:0;iRNA_m5C:0 55007 chr1 152748860 152748860 1 + C A STAD 152748856 + 152748836 152748876 41 CCCGCCACCGAGATGTCTTGCCAGCAGAGCCAGCAGCAGTG CCCGCCACCGAGATGTCTTGCCAGAAGAGCCAGCAGCAGTG < 41bp 0.463668443951351 0.801286347391709 0.19459724 0.6349335 prediction 0.602572694783418 Functional Gain - LCE1F ENSG00000240386 CDS Human protein_coding chr1:152748856 chr1:152748860 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_101862 0 0 0 0 0 unknown 0.500231645788449 0.50023624487175 0.269867 9.19816660305273e-06 hm5C_site_55007 DeepMRMD:0.269867;iRNA_m5C:9.19816660305273e-06 55008 chr2 74683252 74683252 1 + C A STAD 74683248 + 74683228 74683268 41 AGATGAAGACAGTAATCTCTCTCCCTCTCCACTTCGGGACC AGATGAAGACAGTAATCTCTCTCCATCTCCACTTCGGGACC < 41bp 0.376497501345598 0.801257064057515 0.08063677 0.92458475 prediction 0.602514128115031 Functional Gain - INO80B ENSG00000115274 CDS Human protein_coding chr2:74683248 chr2:74683252 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_101863 0 0 1 0 1 Ribosome 0.50023164392115 0.500231640741488 0.8491695 0 hm5C_site_55008 DeepMRMD:0.8491695;iRNA_m5C:0 55009 chr16 32265016 32265016 1 + C A UCEC 32265012 + 32264992 32265032 41 AAAGGGTCGGTGGCCTCTCACTGCCTCCGCGGCAGGGTTGT AAAGGGTCGGTGGCCTCTCACTGCATCCGCGGCAGGGTTGT < 41bp 0.428234681531917 0.80125608227924 0.23239547 0.31653064 prediction 0.602512164558481 Functional Gain - TP53TG3D ENSG00000205456 CDS Human protein_coding chr16:32265012 chr16:32265016 synonymous SNV . 0 25 hm5C_associated_SNPs_101864 0 0 0 0 1 exosome 0.5002316439211 0.500231643921093 0 0 hm5C_site_55009 DeepMRMD:0;iRNA_m5C:0 55010 chr9 136523663 136523663 1 + C A rs147588748 136523659 + 136523639 136523679 41 CTGCGACGATCCCCATGGAACAGCCCTGCACGCCCAGGATG CTGCGACGATCCCCATGGAACAGCACTGCACGCCCAGGATG < 41bp 0.555450521857841 0.856705230989406 0.34052885 0.24001563 prediction 0.602509418263132 Functional Gain - DBH ENSG00000123454 UTR3 Human protein_coding chr9:136523659 chr9:136523663 . . 0 25 hm5C_associated_SNPs_101865 0 0 0 0 0 cytosol 0.500231644001065 0.500231643921092 0 0 hm5C_site_55010 DeepMRMD:0;iRNA_m5C:0 55011 chr5 76714217 76714217 1 + C A STAD 76714213 + 76714193 76714233 41 TGGAGAGTCACCACACCGCCCTGGCCTTCCAGCTCACGGTC TGGAGAGTCACCACACCGCCCTGGACTTCCAGCTCACGGTC < 41bp 0.398122740501429 0.801241764284077 0.03959906 0.101210624 prediction 0.602483528568154 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76714213 chr5:76714217 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_101866 0 0 0 0 1 Nucleus 0.500231645209491 0.500231615135132 0 0 hm5C_site_55011 DeepMRMD:0;iRNA_m5C:0 55012 chr17 40665988 40665988 1 + C A LUSC 40665984 + 40665964 40666004 41 TGCGGCTCTGGGCCCTCAGCCTCGCTCATGCGCGTGAGTAC TGCGGCTCTGGGCCCTCAGCCTCGATCATGCGCGTGAGTAC < 41bp 0.602923312358845 0.904157952929378 0.024313658 0.048261136 prediction 0.602469281141066 Functional Gain - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40665984 chr17:40665988 nonsynonymous SNV 0.297 5 25 hm5C_associated_SNPs_101867 0 0 1 0 1 Endoplasmic reticulum 0.500231625466889 0.500231644352171 0 3.77705628995528e-08 hm5C_site_55012 DeepMRMD:0;iRNA_m5C:3.77705628995528e-08 55013 chr5 72424284 72424284 1 + C A rs75514270 72424280 + 72424260 72424300 41 TCCTGAATCTTCAGCTTCTGCGGTCGCTGAGAGTCCTGGAA TCCTGAATCTTCAGCTTCTGCGGTAGCTGAGAGTCCTGGAA < 41bp 0.406205053816401 0.801227153653247 0.31390792 0.4985113 prediction 0.602454307306495 Functional Gain - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72424280 chr5:72424284 synonymous SNV . 0 25 hm5C_associated_SNPs_101868 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 6.66133814775094e-16 hm5C_site_55013 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 55014 chr20 30064306 30064306 1 + C A THCA 30064302 + 30064282 30064322 41 CCTCTGCACCGGCGAGCCAGCACCCCACTGCCCCTGTCCCC CCTCTGCACCGGCGAGCCAGCACCACACTGCCCCTGTCCCC < 41bp 0.600047785521391 0.90124396208563 0.37109756 0.27494013 prediction 0.602392353128477 Functional Gain - REM1 ENSG00000088320 CDS Human protein_coding chr20:30064302 chr20:30064306 nonsynonymous SNV 0.839 3 25 hm5C_associated_SNPs_101869 0 0 0 0 0 exosome 0.500231643921667 0.500231643921742 0 1.50990331349021e-13 hm5C_site_55014 DeepMRMD:0;iRNA_m5C:1.50990331349021e-13 Body mass index 55015 chr12 100750869 100750869 1 + C A rs374042670 100750865 + 100750845 100750885 41 TGCGCTCAGTCTGAGAGTGGCTGCCTGAGACAGCTGCCACA TGCGCTCAGTCTGAGAGTGGCTGCATGAGACAGCTGCCACA < 41bp 0.44604161503906 0.801181398522179 0.13985229 0.5794677 prediction 0.602362797044357 Functional Gain - SLC17A8 ENSG00000179520 UTR5 Human protein_coding chr12:100750865 chr12:100750869 . . 0 25 hm5C_associated_SNPs_101870 0 0 0 0 0 exosome 0.500231644442991 0.500231932097879 0.1589354 5.75309776262856e-07 hm5C_site_55015 DeepMRMD:0.1589354;iRNA_m5C:5.75309776262856e-07 55016 chr20 13260508 13260508 1 + C A UCEC 13260504 + 13260484 13260524 41 GGGGTGGGACCATACAGCCCCAGGCCACCGGACTTTTGAAA GGGGTGGGACCATACAGCCCCAGGACACCGGACTTTTGAAA < 41bp 0.404041682301982 0.801160067335472 0.18167138 0.3012033 prediction 0.602320134670945 Functional Gain - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13260504 chr20:13260508 synonymous SNV . 0 25 hm5C_associated_SNPs_101871 0 0 0 0 1 exosome 0.500231643921078 0.500231643921092 0 2.90878432451791e-14 hm5C_site_55016 DeepMRMD:0;iRNA_m5C:2.90878432451791e-14 55017 chr14 52327481 52327481 1 + C A rs142851693 52327477 + 52327457 52327497 41 AGCTCCGGAGAGGGGAAAACCACGCTCCTCGGACCAAGCCT AGCTCCGGAGAGGGGAAAACCACGATCCTCGGACCAAGCCT < 41bp 0.570809858155069 0.871919854326257 0.36992306 0.37935144 prediction 0.602219992342375 Functional Gain - GNG2 ENSG00000186469 UTR5 Human protein_coding chr14:52327477 chr14:52327481 . . 0 25 hm5C_associated_SNPs_101872 0 0 0 0 1 Cytosol 0.500231643921093 0.50023164392108 0 0 hm5C_site_55017 DeepMRMD:0;iRNA_m5C:0 55018 chr19 4323207 4323207 1 + C A LGG 4323203 + 4323183 4323223 41 CTGGACGCCCCCGTGCCCGACTGCCTGGGTGTGCACTGTGA CTGGACGCCCCCGTGCCCGACTGCATGGGTGTGCACTGTGA < 41bp 0.387265789417419 0.80110737852579 0.09416294 0.8323465 prediction 0.60221475705158 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323203 chr19:4323207 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101873 0 0 1 0 1 cytosol 0.500222505161732 0.50023164434562 0.664693 1.82783677771248e-05 hm5C_site_55018 DeepMRMD:0.664693;iRNA_m5C:1.82783677771248e-05 55019 chr7 2625966 2625966 1 + C G rs78104931 2625965 + 2625945 2625985 41 AGCCTGAAGGAGGACCTGGACCGCGTGCTGAGCACCTCCCC AGCCTGAAGGAGGACCTGGACGGCGTGCTGAGCACCTCCCC < 41bp 0.50449473271994 0.805600326214266 0.1457223 0.6240443 prediction 0.602211186988653 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2625965 chr7:2625966 nonsynonymous SNV 0.798 3 22 hm5C_associated_SNPs_101874 0 0 0 0 0 chromatin 0.500231643921227 0.500231643921092 0.2480886 0 hm5C_site_55019 DeepMRMD:0.2480886;iRNA_m5C:0 55020 chr3 32031414 32031414 1 + T G SKCM 32031411 + 32031391 32031431 41 GCATGCCATCATAGATGTCACACTGGTGAGAAACCTTACAA GCATGCCATCATAGATGTCACACGGGTGAGAAACCTTACAA < 41bp 0.570914789792075 0.872019750159366 0.06165138 0.27131534 prediction 0.602209920734581 Functional Gain - ZNF860 ENSG00000197385 CDS Human protein_coding chr3:32031411 chr3:32031414 synonymous SNV . 0 24 hm5C_associated_SNPs_101875 0 0 0 0 0 exosome 0.500231313284965 0.500213706878301 0 0 hm5C_site_55020 DeepMRMD:0;iRNA_m5C:0 55021 chr2 204732726 204732726 1 + C A LIHC 204732722 + 204732702 204732742 41 CTGAACCTGGCTACCAGGACCTGGCCCTGCACTCTCCTGTT CTGAACCTGGCTACCAGGACCTGGACCTGCACTCTCCTGTT < 41bp 0.580302064924915 0.88139800298508 0.03624782 0.15778843 prediction 0.60219187612033 Functional Gain - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204732722 chr2:204732726 nonsynonymous SNV 0.023 2 25 hm5C_associated_SNPs_101876 0 0 0 0 1 exosome 0.500233783523432 0.500206992994751 0 0 hm5C_site_55021 DeepMRMD:0;iRNA_m5C:0 55022 chr13 34404130 34404130 1 + T G STAD 34404128 + 34404108 34404148 41 GTAGTAGGTGCTTGGCGGTTCGTGTGCCTGCTCCCAGCATT GTAGTAGGTGCTTGGCGGTTCGGGTGCCTGCTCCCAGCATT < 41bp 0.476133381398654 0.80103331257457 0.15432301 0.57030475 prediction 0.60206662514914 Functional Gain - RFC3 ENSG00000133119 CDS Human protein_coding chr13:34404128 chr13:34404130 synonymous SNV . 0 23 hm5C_associated_SNPs_101877 0 0 1 0 1 Ribosome 0.500231643886129 0.500231643921092 0.1406095 6.99260649383859e-11 hm5C_site_55022 DeepMRMD:0.1406095;iRNA_m5C:6.99260649383859e-11 55023 chr20 21689880 21689880 1 + C G LUAD 21689879 + 21689859 21689899 41 GTCGGCCTCCACCCTCTCTGCCGTGGGCGGCTTTCTCCCCG GTCGGCCTCCACCCTCTCTGCGGTGGGCGGCTTTCTCCCCG < 41bp 0.508818603415193 0.809821318410111 0.8758198 0.9024572 prediction 0.602005429989836 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21689879 chr20:21689880 synonymous SNV . 0 22 hm5C_associated_SNPs_101878 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.0532747999999998 0 hm5C_site_55023 DeepMRMD:0.0532747999999998;iRNA_m5C:0 55024 chrX 53456819 53456819 1 + C A UCEC 53456815 + 53456795 53456835 41 TGTGTAGATGCGCTCAGTAACCAGCTGCGCCTCGCCATGGA TGTGTAGATGCGCTCAGTAACCAGATGCGCCTCGCCATGGA < 41bp 0.424243056309866 0.800996416108621 0.58552337 0.90392303 prediction 0.601992832217241 Functional Gain - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53456815 chrX:53456819 nonsynonymous SNV 0.879 2 25 hm5C_associated_SNPs_101879 0 0 0 0 1 chromatin 0.500240934418807 0.50023486610132 0.63679932 0 hm5C_site_55024 DeepMRMD:0.63679932;iRNA_m5C:0 55025 chr19 36207582 36207582 1 + C A STAD 36207578 + 36207558 36207598 41 GCCCGGATGGACCATCCGCTCCACCTTCCTCTACTCCTCCT GCCCGGATGGACCATCCGCTCCACATTCCTCTACTCCTCCT < 41bp 0.42295000055997 0.80098974258619 0.04670784 0.037694454 prediction 0.601979485172379 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207578 chr19:36207582 synonymous SNV . 0 25 hm5C_associated_SNPs_101880 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_55025 DeepMRMD:0;iRNA_m5C:0 55026 chr12 121622625 121622625 1 + C A rs183949627 121622621 + 121622601 121622641 41 ACTGAAGCCAGGCACCGTGGCTCACGTCTGTAATCCCAGCG ACTGAAGCCAGGCACCGTGGCTCAAGTCTGTAATCCCAGCG < 41bp 0.416390360793264 0.800976568679275 0.094942 0.26554352 prediction 0.60195313735855 Functional Gain - P2RX7 ENSG00000089041 UTR3 Human protein_coding chr12:121622621 chr12:121622625 . . 0 25 hm5C_associated_SNPs_101881 0 0 0 0 0 Endoplasmic reticulum 0.500231643916852 0.500231643921092 0 8.48099368511157e-12 hm5C_site_55026 DeepMRMD:0;iRNA_m5C:8.48099368511157e-12 55027 chr4 1803734 1803734 1 + C A COAD 1803730 + 1803710 1803750 41 CAAGGTGGGCCCGGACGGCACACCCTACGTTACCGTGCTCA CAAGGTGGGCCCGGACGGCACACCATACGTTACCGTGCTCA < 41bp 0.406367323718621 0.800950760711968 0.0574041 0.18705136 prediction 0.601901521423936 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1803730 chr4:1803734 synonymous SNV . 0 25 hm5C_associated_SNPs_101882 0 0 1 0 1 Ribosome 0.500231643819767 0.500231643921142 0 2.02748928757046e-10 hm5C_site_55027 DeepMRMD:0;iRNA_m5C:2.02748928757046e-10 55028 chr1 238090547 238090547 1 + C A LUAD 238090543 + 238090523 238090563 41 ATGTATGTGGCCATCCAGCCCGTGCTATCCCTCTACGCCTC ATGTATGTGGCCATCCAGCCCGTGATATCCCTCTACGCCTC < 41bp 0.431484405796325 0.800949616629765 0.03133288 0.07738909 prediction 0.601899233259529 Functional Gain - LOC100130331 ENSG00000237250;ENSG00000243781 ncRNA_exonic Human other chr1:238090543 chr1:238090547 . . 0 25 hm5C_associated_SNPs_101883 0 0 0 0 0 unknown 0.500231643919723 0.500231640534173 0 0 hm5C_site_55028 DeepMRMD:0;iRNA_m5C:0 55029 chr18 14179589 14179589 1 + C A LGG 14179585 + 14179565 14179605 41 GGAGACCTTGACGCCCTGGACAAGCAGCACAGGTAGCGAGG GGAGACCTTGACGCCCTGGACAAGAAGCACAGGTAGCGAGG < 41bp 0.543891469655081 0.844831295795553 0.12887874 0.1922473 prediction 0.601879652280945 Functional Gain - ANKRD20A5P ENSG00000186481 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr18:14179585 chr18:14179589 . . 0 25 hm5C_associated_SNPs_101884 0 0 1 0 1 unknown 0.50023146787652 0.500231643920473 0 3.52087905941545e-07 hm5C_site_55029 DeepMRMD:0;iRNA_m5C:3.52087905941545e-07 55030 chr1 110754240 110754240 1 + T G BLCA 110754238 + 110754218 110754258 41 GAGGCGTCGGAGAAGATCATCATCAACGTGGGCGGCACGCG GAGGCGTCGGAGAAGATCATCAGCAACGTGGGCGGCACGCG < 41bp 0.479766037225481 0.800934645280389 0.3417519 0.8460078 prediction 0.601869290560779 Functional Gain - KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110754238 chr1:110754240 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_101885 0 0 0 0 0 Nucleus 0.500232464831182 0.500231646392021 0.6920156 0 hm5C_site_55030 DeepMRMD:0.6920156;iRNA_m5C:0 55031 chr1 11897082 11897082 1 + C A rs41275500 11897078 + 11897058 11897098 41 ATCCAGCATCCTCACCCGGGCTGGCGAGCAGCGCAAACGGA ATCCAGCATCCTCACCCGGGCTGGAGAGCAGCGCAAACGGA < 41bp 0.406974965046934 0.800928220447683 0.07748151 0.122237206 prediction 0.601856440895367 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11897078 chr1:11897082 synonymous SNV . 0 25 hm5C_associated_SNPs_101886 0 0 1 0 1 Endoplasmic reticulum 0.500231643909834 0.500231608844645 0 0 hm5C_site_55031 DeepMRMD:0;iRNA_m5C:0 Major depressive disorder 55032 chr1 247751915 247751915 1 + T A LUAD 247751911 + 247751891 247751931 41 CCAGCAGTGTTATTCCCCAGCTCCTGGTAAACCTGTGGGAA CCAGCAGTGTTATTCCCCAGCTCCAGGTAAACCTGTGGGAA < 41bp 0.510833412665943 0.811741699941913 0.26623583 0.29370722 prediction 0.601816574551941 Functional Gain - OR2G2 ENSG00000177489 CDS Human protein_coding chr1:247751911 chr1:247751915 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_101887 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_55032 DeepMRMD:0;iRNA_m5C:0 55033 chr6 148865725 148865725 1 + C A UCEC 148865721 + 148865701 148865741 41 CTAGCGACTGTCCCCCAGCACTGGCTCCCAGGCCTCTCTCA CTAGCGACTGTCCCCCAGCACTGGATCCCAGGCCTCTCTCA < 41bp 0.421479528377171 0.80090526292017 0.7449045 0.8303749 prediction 0.601810525840341 Functional Gain - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148865721 chr6:148865725 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_101888 0 0 0 0 0 Cytosol 0.500236472275376 0.50023240831721 0.1709408 0 hm5C_site_55033 DeepMRMD:0.1709408;iRNA_m5C:0 55034 chr6 160557602 160557602 1 + C G SKCM 160557601 + 160557581 160557621 41 TTCCCTCGAAGAGGATGTCACCGAAAAGCTGAGCCCTTCAT TTCCCTCGAAGAGGATGTCACGGAAAAGCTGAGCCCTTCAT < 41bp 0.493956709838526 0.800881404215215 0.28223455 0.75844336 prediction 0.601762808430431 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557601 chr6:160557602 synonymous SNV . 0 22 hm5C_associated_SNPs_101889 0 0 0 0 2 nucleolus 0.500231643921098 0.500231643921092 0.51688672 0 hm5C_site_55034 DeepMRMD:0.51688672;iRNA_m5C:0 55035 chr19 36250358 36250358 1 + C A OV 36250354 + 36250334 36250374 41 ACTACTGGCCATCCCAGAGCCAGACCTGGTGTCCCAAGGTG ACTACTGGCCATCCCAGAGCCAGAACTGGTGTCCCAAGGTG < 41bp 0.400988358581707 0.800869620844254 0.28909752 0.86823124 prediction 0.601739241688507 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36250354 chr19:36250358 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_101890 0 0 1 0 2 membrane 0.500231643921092 0.500231643921092 0.73646248 0 hm5C_site_55035 DeepMRMD:0.73646248;iRNA_m5C:0 55036 chr11 723311 723311 1 + C G rs60889456 723310 + 723290 723330 41 CCACTTCAGAGCCCACCCCCCCGGGGGATGCCCTACCACCA CCACTTCAGAGCCCACCCCCCGGGGGGATGCCCTACCACCA < 41bp 0.503109845206778 0.803974975700395 0.9387065 0.9469237 prediction 0.601730260987235 Functional Gain - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:723310 chr11:723311 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_101891 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643921092 0.0164344000000001 0 hm5C_site_55036 DeepMRMD:0.0164344000000001;iRNA_m5C:0 55037 chr18 76753891 76753891 1 + C A LUAD 76753887 + 76753867 76753907 41 GGCGCACCCACGAGCCTCGGCAGCCCCGGGCTGCCCGCCGT GGCGCACCCACGAGCCTCGGCAGCACCGGGCTGCCCGCCGT < 41bp 0.4107312283788 0.800824549445706 0.45590547 0.56222737 prediction 0.601649098891411 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76753887 chr18:76753891 nonsynonymous SNV 0.095 3 25 hm5C_associated_SNPs_101892 0 0 0 0 0 exosome 0.500231643921096 0.500231649979614 0.12445474 1.21170358191591e-08 hm5C_site_55037 DeepMRMD:0.12445474;iRNA_m5C:1.21170358191591e-08 55038 chr16 85694968 85694968 1 + C A rs116863796 85694964 + 85694944 85694984 41 ATTTGAGCCCAGCCGCCAGGCAGCCGTGCCGCTGGTGAAGG ATTTGAGCCCAGCCGCCAGGCAGCAGTGCCGCTGGTGAAGG < 41bp 0.393892618241229 0.800802239410125 0.14543182 0.16997758 prediction 0.601604478820249 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85694964 chr16:85694968 synonymous SNV . 0 25 hm5C_associated_SNPs_101893 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_55038 DeepMRMD:0;iRNA_m5C:0 55039 chr19 56369914 56369914 1 + C G rs113444208 56369913 + 56369893 56369933 41 CCTGTTCACACCTGAGGGTGCCGAGGGCCCGACTCCGCAAA CCTGTTCACACCTGAGGGTGCGGAGGGCCCGACTCCGCAAA < 41bp 0.503258657122449 0.804053447481305 0.9120738 0.9200654 prediction 0.601589580717712 Functional Gain - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56369913 chr19:56369914 synonymous SNV . 0 22 hm5C_associated_SNPs_101894 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0159832 0 hm5C_site_55039 DeepMRMD:0.0159832;iRNA_m5C:0 55040 chr11 17742464 17742464 1 + C A LUSC 17742460 + 17742440 17742480 41 TGTTTGCAGATGGACTACAGCGGCCCCCCGAGCGGCGCCCG TGTTTGCAGATGGACTACAGCGGCACCCCGAGCGGCGCCCG < 41bp 0.592810732607058 0.893584956118978 0.63011146 0.89647967 prediction 0.60154844702384 Functional Gain - MYOD1 ENSG00000129152 CDS Human protein_coding chr11:17742460 chr11:17742464 nonsynonymous SNV 0.983 5 25 hm5C_associated_SNPs_101895 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0.53273642 0 hm5C_site_55040 DeepMRMD:0.53273642;iRNA_m5C:0 55041 chr8 128750683 128750683 1 + C A LUAD 128750679 + 128750659 128750699 41 AAGAAATTCGAGCTGCTGCCCACCCCGCCCCTGTCCCCTAG AAGAAATTCGAGCTGCTGCCCACCACGCCCCTGTCCCCTAG < 41bp 0.601143161392159 0.90190618973751 0.017084837 0.012917578 prediction 0.601526056690702 Functional Gain - MYC ENSG00000136997 CDS Human protein_coding chr8:128750679 chr8:128750683 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101896 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921088 0 0 hm5C_site_55041 DeepMRMD:0;iRNA_m5C:0 55042 chr4 113350370 113350370 1 + C A UCEC 113350366 + 113350346 113350386 41 AGAAGCCTGCAAGCTGGCAGCTGCCTTCAGTGCCTATACGC AGAAGCCTGCAAGCTGGCAGCTGCATTCAGTGCCTATACGC < 41bp 0.394172165212526 0.800762407729537 0.36048666 0.59300137 prediction 0.601524815459074 Functional Gain - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113350366 chr4:113350370 synonymous SNV . 0 25 hm5C_associated_SNPs_101897 0 0 0 0 2 chromatin 0.500232772449791 0.500290341737618 0.18600274 0.000115138575653484 hm5C_site_55042 DeepMRMD:0.18600274;iRNA_m5C:0.000115138575653484 55043 chrX 26212547 26212547 1 + T G BRCA 26212544 + 26212524 26212564 41 TAAGCGCTTAAGCAAAGATGCTGTAAAGAAGAAGGCGTGCA TAAGCGCTTAAGCAAAGATGCTGGAAAGAAGAAGGCGTGCA < 41bp 0.574744240485303 0.875487757776381 0.105502784 0.36934662 prediction 0.601487034582156 Functional Gain - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26212544 chrX:26212547 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_101898 0 0 0 0 0 unknown 0.500231643913351 0.500231643921118 0 1.55340185159503e-11 hm5C_site_55043 DeepMRMD:0;iRNA_m5C:1.55340185159503e-11 55044 chrX 109699276 109699276 1 + T G rs7883315 109699273 + 109699253 109699293 41 ATGGCCTTTGTCTTGTCCCTCAGTGGGGGTTCTCTAGCTCT ATGGCCTTTGTCTTGTCCCTCAGGGGGGGTTCTCTAGCTCT < 41bp 0.56095296147638 0.861655215979781 0.6962207 0.9393716 prediction 0.601404509006802 Functional Gain - RTL9 ENSG00000243978 UTR3 Human protein_coding chrX:109699273 chrX:109699276 . . 0 24 hm5C_associated_SNPs_101899 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.4863018 0 hm5C_site_55044 DeepMRMD:0.4863018;iRNA_m5C:0 55045 chr19 47259533 47259533 1 + C A rs28937900 47259529 + 47259509 47259549 41 CTGCTCCGCGCGCTGGGCATCCGCCTAGTGAGCTGGGAAGG CTGCTCCGCGCGCTGGGCATCCGCATAGTGAGCTGGGAAGG < 41bp 0.41807871994495 0.800693190071716 0.2723285 0.21289626 prediction 0.601386380143432 Functional Gain - FKRP ENSG00000181027 CDS Human protein_coding chr19:47259529 chr19:47259533 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_101900 7 0 0 0 0 Nucleus 0.500231643901557 0.500231643921469 0 3.9824810116329e-11 hm5C_site_55045 DeepMRMD:0;iRNA_m5C:3.9824810116329e-11 Limb-girdle muscular dystrophy-dystroglycanopathy, type C5 Limb-girdle muscular dystrophy-dystroglycanopathy, type C5 55046 chr7 98633223 98633223 1 + C A SARC 98633219 + 98633199 98633239 41 CCTGGCCCTCCTTTCTTCATCGAACGTCTCCACCGCTTGCC CCTGGCCCTCCTTTCTTCATCGAAAGTCTCCACCGCTTGCC < 41bp 0.431691701141579 0.800689286499037 0.32849327 0.41300628 prediction 0.601378572998074 Functional Gain - SMURF1 ENSG00000198742 CDS Human protein_coding chr7:98633219 chr7:98633223 synonymous SNV . 0 25 hm5C_associated_SNPs_101901 0 0 0 0 0 Ribosome 0.500231610892687 0.500231647293408 0 7.28014428741375e-08 hm5C_site_55046 DeepMRMD:0;iRNA_m5C:7.28014428741375e-08 55047 chr19 22785614 22785614 1 + C A LUSC 22785610 + 22785590 22785630 41 GAGTCTACACTGCCCTCTCTCAGCCAGGGGGCAGCGCTGAA GAGTCTACACTGCCCTCTCTCAGCAAGGGGGCAGCGCTGAA < 41bp 0.572409689272812 0.873081625394031 0.56743914 0.8989382 prediction 0.601343872242438 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785610 chr19:22785614 . . 0 25 hm5C_associated_SNPs_101902 0 0 0 0 1 unknown 0.500231643939588 0.500231708236356 0.66299812 1.28593536263821e-07 hm5C_site_55047 DeepMRMD:0.66299812;iRNA_m5C:1.28593536263821e-07 55048 chr12 6936231 6936231 1 + T G LUAD 6936229 + 6936209 6936249 41 GCCGACTCTCCCTTGGGTCCCCTGAGAGCAGAGCCGTTGGA GCCGACTCTCCCTTGGGTCCCCGGAGAGCAGAGCCGTTGGA < 41bp 0.477591628122954 0.800656190631768 0.20769662 0.86965823 prediction 0.601312381263535 Functional Gain - GPR162 ENSG00000250510 CDS Human protein_coding chr12:6936229 chr12:6936231 synonymous SNV . 0 23 hm5C_associated_SNPs_101903 0 0 0 0 0 Endoplasmic reticulum 0.500231643919797 0.500231594375108 0.73931646 0 hm5C_site_55048 DeepMRMD:0.73931646;iRNA_m5C:0 55049 chr12 130647509 130647509 1 + C A SKCM 130647505 + 130647485 130647525 41 AGCATGCAGCGCCCGGGCCCCCGCCTGTGGCTGGTCCTGCA AGCATGCAGCGCCCGGGCCCCCGCATGTGGCTGGTCCTGCA < 41bp 0.435100281969319 0.800646512240097 0.12305248 0.2925033 prediction 0.601293024480195 Functional Gain - FZD10 ENSG00000111432 CDS Human protein_coding chr12:130647505 chr12:130647509 nonsynonymous SNV 0.934 0 25 hm5C_associated_SNPs_101904 0 0 0 0 0 exosome 0.500231643921211 0.500231643975607 0 1.08791642361439e-10 hm5C_site_55049 DeepMRMD:0;iRNA_m5C:1.08791642361439e-10 55050 chr15 29346705 29346705 1 + C A rs111870710 29346701 + 29346681 29346721 41 CGAGGAGGCCAACGGGAACACCGGCGCCTCCCCCTACCGCC CGAGGAGGCCAACGGGAACACCGGAGCCTCCCCCTACCGCC < 41bp 0.58845143047463 0.889073745919805 0.79417163 0.86584914 prediction 0.601244630890352 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29346701 chr15:29346705 synonymous SNV . 0 25 hm5C_associated_SNPs_101905 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0.14335502 0 hm5C_site_55050 DeepMRMD:0.14335502;iRNA_m5C:0 55051 chr1 247587771 247587771 1 + C G rs41311573 247587770 + 247587750 247587790 41 CATCAGAAAGAAGCTGCTTCCCGAGGCCTCTCTGCTCATCA CATCAGAAAGAAGCTGCTTCCGGAGGCCTCTCTGCTCATCA < 41bp 0.510868352394293 0.811475587560207 0.8080474 0.93192387 prediction 0.601214470331827 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247587770 chr1:247587771 synonymous SNV . 0 22 hm5C_associated_SNPs_101906 0 0 0 0 0 Nucleus 0.500231646619476 0.500231644131708 0.24775294 0 hm5C_site_55051 DeepMRMD:0.24775294;iRNA_m5C:0 55052 chr20 30617636 30617636 1 + T A SKCM 30617632 + 30617612 30617652 41 ACGGAGACCGGCGCAAGTTCCTCCTCCTTGGTGAGCCCCCG ACGGAGACCGGCGCAAGTTCCTCCACCTTGGTGAGCCCCCG < 41bp 0.536259846227218 0.83685957672274 0.44246763 0.95026237 prediction 0.601199460991044 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30617632 chr20:30617636 nonsynonymous SNV 0.847 4 25 hm5C_associated_SNPs_101907 0 0 0 1 1 exosome 0.50023162938098 0.500231639870109 0.90052474 2.09782584636997e-08 hm5C_site_55052 DeepMRMD:0.90052474;iRNA_m5C:2.09782584636997e-08 55053 chr2 176987785 176987785 1 + C A LUAD 176987781 + 176987761 176987801 41 GCGGCGGCGATGAGCGGCCTCTACCACCCGTACGTTCCCCC GCGGCGGCGATGAGCGGCCTCTACAACCCGTACGTTCCCCC < 41bp 0.582543195151319 0.883127360933461 0.18901238 0.74308103 prediction 0.601168331564283 Functional Gain - HOXD9 ENSG00000128709 CDS Human protein_coding chr2:176987781 chr2:176987785 nonsynonymous SNV 0.746 3 25 hm5C_associated_SNPs_101908 0 0 1 0 0 Endoplasmic reticulum 0.500226853383457 0.50023164392099 0.48616206 9.58107506510153e-06 hm5C_site_55053 DeepMRMD:0.48616206;iRNA_m5C:9.58107506510153e-06 55054 chr1 55075100 55075100 1 + G T STAD 55075104 - 55075084 55075124 41 AGGCAGGCTGCTGGCATCCTCCCCCCGGGCCACCGTCACAG AGGCAGGCTGCTGGCATCCTCCCCACGGGCCACCGTCACAG < 41bp 0.397391418119863 0.800545525536617 0.04835275 0.029700547 prediction 0.601091051073234 Functional Gain - FAM151A ENSG00000162391 CDS Human protein_coding chr1:55075104 chr1:55075100 synonymous SNV . 0 25 hm5C_associated_SNPs_101909 0 0 0 0 0 exosome 0.500231643921211 0.500231643921191 0 0 hm5C_site_55054 DeepMRMD:0;iRNA_m5C:0 55055 chr17 3324273 3324273 1 + C A LUAD 3324269 + 3324249 3324289 41 GACCGACTCCTGGCCATCTGCCAGCCCCTCACCTACAGCAC GACCGACTCCTGGCCATCTGCCAGACCCTCACCTACAGCAC < 41bp 0.423031615260338 0.800543993753674 0.06460339 0.04953122 prediction 0.601087987507348 Functional Gain - OR3A3 ENSG00000159961 CDS Human protein_coding chr17:3324269 chr17:3324273 nonsynonymous SNV 0.085 3 25 hm5C_associated_SNPs_101910 0 0 0 0 0 exosome 0.500231643914507 0.500231643920946 0 1.2877920951837e-11 hm5C_site_55055 DeepMRMD:0;iRNA_m5C:1.2877920951837e-11 55056 chr21 33785228 33785228 1 + C A rs146014823 33785224 + 33785204 33785244 41 CCCGTGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGCCGCC CCCGTGCAGCATCCCGGCCTCCGCAGGCAGGTAGAGCCGCC < 41bp 0.566366495596736 0.866890465751503 0.12091172 0.5863575 prediction 0.601047940309533 Functional Gain - EVA1C ENSG00000166979 CDS Human protein_coding chr21:33785224 chr21:33785228 synonymous SNV . 0 25 hm5C_associated_SNPs_101911 0 0 0 0 1 Ribosome 0.500231643921151 0.500231643921092 0.172715 0 hm5C_site_55056 DeepMRMD:0.172715;iRNA_m5C:0 55057 chr19 10224481 10224481 1 + C A UCEC 10224477 + 10224457 10224497 41 GAAGCAGCGCCCATGGCACCCCGCCGTGGTCTTCTCTGTCC GAAGCAGCGCCCATGGCACCCCGCAGTGGTCTTCTCTGTCC < 41bp 0.579658508471434 0.880113810367841 0.25722086 0.3176322 prediction 0.600910603792813 Functional Gain - P2RY11;PPAN-P2RY11 ENSG00000130810;ENSG00000243207;ENSG00000244165 CDS Human other chr19:10224477 chr19:10224481 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_101912 0 0 1 0 0 unknown 0.500231643915374 0.500231643727662 0 0 hm5C_site_55057 DeepMRMD:0;iRNA_m5C:0 55058 chr9 107266860 107266860 1 + C A LUAD 107266856 + 107266836 107266876 41 CCACTCAGATGTACCTCTCCCTTGCCATGGGCTCCACTGAG CCACTCAGATGTACCTCTCCCTTGACATGGGCTCCACTGAG < 41bp 0.422269607545693 0.800450864190536 0.15139514 0.3632581 prediction 0.600901728381072 Functional Gain - OR13F1 ENSG00000186881 CDS Human protein_coding chr9:107266856 chr9:107266860 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_101913 0 0 0 0 0 unknown 0.50023164393641 0.500231644092954 0 3.13087999970207e-10 hm5C_site_55058 DeepMRMD:0;iRNA_m5C:3.13087999970207e-10 55059 chr14 67664950 67664950 1 + T G UCEC 67664948 + 67664928 67664968 41 CTCTCTGCACCCCACACTCCCATGATCCGAGAGATCTTCAA CTCTCTGCACCCCACACTCCCAGGATCCGAGAGATCTTCAA < 41bp 0.549887303432215 0.850335986780243 0.08470562 0.468306 prediction 0.600897366696056 Functional Gain - FAM71D ENSG00000172717 CDS Human protein_coding chr14:67664948 chr14:67664950 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_101914 0 0 0 0 2 exosome 0.500231643921091 0.500231643921298 0 4.15223411209809e-13 hm5C_site_55059 DeepMRMD:0;iRNA_m5C:4.15223411209809e-13 55060 chr2 128408376 128408376 1 + T G UCEC 128408373 + 128408353 128408393 41 TCTCCCTGGCCACGGCAGAGCAATGTGGCCAGGAGACGCCA TCTCCCTGGCCACGGCAGAGCAAGGTGGCCAGGAGACGCCA < 41bp 0.592755939168435 0.893204050626559 0.058057994 0.6394693 prediction 0.600896222916246 Functional Gain - GPR17 ENSG00000144230 CDS Human protein_coding chr2:128408373 chr2:128408376 nonsynonymous SNV 0.954 2 24 hm5C_associated_SNPs_101915 0 0 0 0 1 Endoplasmic reticulum 0.500231675048249 0.50023164392158 0.2789386 0 hm5C_site_55060 DeepMRMD:0.2789386;iRNA_m5C:0 55061 chr5 175110441 175110441 1 + C A LUAD 175110437 + 175110417 175110457 41 GCTATCACTGACCTGCTCCTCGGCCTCCTGGTGCTGCCCTT GCTATCACTGACCTGCTCCTCGGCATCCTGGTGCTGCCCTT < 41bp 0.594842809518852 0.895266063760879 0.33430564 0.2855286 prediction 0.600846508484054 Functional Gain - HRH2 ENSG00000113749 CDS Human protein_coding chr5:175110437 chr5:175110441 nonsynonymous SNV 0.936 1 25 hm5C_associated_SNPs_101916 0 0 0 0 0 nucleus 0.50023164392108 0.50023168432688 0 8.08115998562897e-08 hm5C_site_55061 DeepMRMD:0;iRNA_m5C:8.08115998562897e-08 55062 chr1 186276738 186276738 1 + C G rs368295547 186276737 + 186276717 186276757 41 GAAGCTCACGCCCACCACCCCCGAGAAGCTCGCACCCACCA GAAGCTCACGCCCACCACCCCGGAGAAGCTCGCACCCACCA < 41bp 0.501238996609021 0.801648827344358 0.15136418 0.87662095 prediction 0.600819661470674 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276737 chr1:186276738 synonymous SNV . 0 22 hm5C_associated_SNPs_101917 0 0 0 0 0 nucleoplasm 0.500231643918413 0.500231643916265 0.7532419 0 hm5C_site_55062 DeepMRMD:0.7532419;iRNA_m5C:0 55063 chr11 55339944 55339944 1 + T A LUAD 55339940 + 55339920 55339960 41 GCTGCCTGGAGATCTTCATCCTCATCCTCACGGCTGTTGAC GCTGCCTGGAGATCTTCATCCTCAACCTCACGGCTGTTGAC < 41bp 0.498127670524692 0.800405715716831 0.07715973 0.19937295 prediction 0.600811431433662 Functional Gain - OR4C16 ENSG00000181935 CDS Human other chr11:55339940 chr11:55339944 nonsynonymous SNV 0.952 1 25 hm5C_associated_SNPs_101918 0 0 0 0 0 unknown 0.500232094372944 0.500231948406695 0 0 hm5C_site_55063 DeepMRMD:0;iRNA_m5C:0 55064 chr17 6025368 6025368 1 + C A rs186790130 6025364 + 6025344 6025384 41 AGGCCTAGGATAACCCTGGCCAGGCCCCATGGTCCTGCTCT AGGCCTAGGATAACCCTGGCCAGGACCCATGGTCCTGCTCT < 41bp 0.456512680291674 0.800400059487382 0.2834165 0.62746537 prediction 0.600800118974764 Functional Gain - WSCD1 ENSG00000179314 UTR3 Human protein_coding chr17:6025364 chr17:6025368 . . 0 25 hm5C_associated_SNPs_101919 0 0 1 0 0 exosome 0.500231676614859 0.500231644014725 0.25493074 0 hm5C_site_55064 DeepMRMD:0.25493074;iRNA_m5C:0 55065 chr1 240371067 240371067 1 + C A LGG 240371063 + 240371043 240371083 41 TCCACCCCCTCTACCCGGAGCGGGCATACCCCCTCCTCCCC TCCACCCCCTCTACCCGGAGCGGGAATACCCCCTCCTCCCC < 41bp 0.446979857805613 0.800395325310135 0.7997216 0.849379 prediction 0.60079065062027 Functional Gain - FMN2 ENSG00000155816 CDS Human protein_coding chr1:240371063 chr1:240371067 synonymous SNV . 0 25 hm5C_associated_SNPs_101920 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.0993147999999999 0 hm5C_site_55065 DeepMRMD:0.0993147999999999;iRNA_m5C:0 55066 chr1 154543879 154543879 1 + C A KIRC 154543875 + 154543855 154543895 41 GTGCTGAAGAGTGAGGTGGCCAGCCTGGACGACTTCACACC GTGCTGAAGAGTGAGGTGGCCAGCATGGACGACTTCACACC < 41bp 0.415130025680524 0.800377341199491 0.649974 0.52688503 prediction 0.600754682398982 Functional Gain - CHRNB2 ENSG00000160716 CDS Human protein_coding chr1:154543875 chr1:154543879 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_101921 0 0 0 0 0 nucleus 0.500231643916261 0.500231193053632 0 0 hm5C_site_55066 DeepMRMD:0;iRNA_m5C:0 55067 chr7 143771391 143771391 1 + T G LUAD 143771388 + 143771368 143771408 41 GCCCAAGGATTCAGATGCTCCTCTTTGGGCTCTTCTCCCTG GCCCAAGGATTCAGATGCTCCTCGTTGGGCTCTTCTCCCTG < 41bp 0.442506322484547 0.800364018786295 0.05988428 0.035618693 prediction 0.600728037572591 Functional Gain - OR2A25 ENSG00000221933 CDS Human protein_coding chr7:143771388 chr7:143771391 nonsynonymous SNV 0.951 1 24 hm5C_associated_SNPs_101922 0 0 0 0 0 unknown 0.500231643920989 0.500231643901009 0 0 hm5C_site_55067 DeepMRMD:0;iRNA_m5C:0 55068 chr2 103014302 103014302 1 + T G rs1135354 103014299 + 103014279 103014319 41 CCTGAGTTTGCTACTTACTTCTGTGGCCTCTGGAACCTTAT CCTGAGTTTGCTACTTACTTCTGGGGCCTCTGGAACCTTAT < 41bp 0.55492460316672 0.855284026039181 0.25004536 0.6966354 prediction 0.600718845744922 Functional Gain - IL18R1 ENSG00000115604 UTR3 Human protein_coding chr2:103014299 chr2:103014302 . . 0 24 hm5C_associated_SNPs_101923 0 0 1 0 0 Nucleus 0.500231643930761 0.500231643873248 0.3932708 0 hm5C_site_55068 DeepMRMD:0.3932708;iRNA_m5C:0 55069 chrX 130220635 130220635 1 + T A HNSC 130220631 + 130220611 130220651 41 CCTTGCTCAAAGCAAGCCTTCTGATGAAGGTCAGTTCCCTG CCTTGCTCAAAGCAAGCCTTCTGAAGAAGGTCAGTTCCCTG < 41bp 0.492505065302651 0.800346446802125 0.17988992 0.29725212 prediction 0.600692893604249 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220631 chrX:130220635 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_101924 0 0 0 0 1 unknown 0.500231643921093 0.500231643921092 0 0 hm5C_site_55069 DeepMRMD:0;iRNA_m5C:0 55070 chr9 138078284 138078284 1 + T G rs562536713 138078282 + 138078262 138078302 41 CCTGCAGCAAGAGCCAGCTGCATGGGCTGGGCTGGAGTCAG CCTGCAGCAAGAGCCAGCTGCAGGGGCTGGGCTGGAGTCAG < 41bp 0.488060673516963 0.800335308151335 0.52237725 0.93269134 prediction 0.60067061630267 Functional Gain - LOC401557 ENSG00000130558;ENSG00000227958 intergenic Human other chr9:138078282 chr9:138078284 . . 0 23 hm5C_associated_SNPs_101925 0 0 0 0 0 unknown 0.50023164391448 0.50023164392222 0.82062818 1.54791734985338e-11 hm5C_site_55070 DeepMRMD:0.82062818;iRNA_m5C:1.54791734985338e-11 55071 chr2 16082199 16082199 1 + T A LUAD 16082195 + 16082175 16082215 41 GGAGGCGAGCCGATGCCGAGCTGCTCCACGTCCACCATGCC GGAGGCGAGCCGATGCCGAGCTGCACCACGTCCACCATGCC < 41bp 0.494301912805403 0.800327451562788 0.12066889 0.14568558 prediction 0.600654903125576 Functional Gain - MYCN ENSG00000134323 CDS Human protein_coding chr2:16082195 chr2:16082199 nonsynonymous SNV 0.986 0 25 hm5C_associated_SNPs_101926 0 0 0 0 0 Cytosol 0.50023132433449 0.500231643122915 0 6.37576849094046e-07 hm5C_site_55071 DeepMRMD:0;iRNA_m5C:6.37576849094046e-07 55072 chr19 17887482 17887482 1 + C G HNSC 17887481 + 17887461 17887501 41 CCCCAGAGACCTCGGTCTGCCCCCAGAACCAGCAGGTGGGT CCCCAGAGACCTCGGTCTGCCGCCAGAACCAGCAGGTGGGT < 41bp 0.502685533567663 0.803004482928449 0.010017723 0.24726415 prediction 0.600637898721572 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17887481 chr19:17887482 nonsynonymous SNV 0.397 0 22 hm5C_associated_SNPs_101927 0 0 1 0 2 Cytosol 0.500231680336418 0.500231613087038 0 0 hm5C_site_55072 DeepMRMD:0;iRNA_m5C:0 55073 chr11 4842727 4842727 1 + C A LUAD 4842723 + 4842703 4842743 41 GGCATTCCAGGCCTGAAAGCCACCCAGTACTGGATCTCCAT GGCATTCCAGGCCTGAAAGCCACCAAGTACTGGATCTCCAT < 41bp 0.430231409711345 0.800316386216799 0.10777423 0.2861352 prediction 0.600632772433597 Functional Gain - OR51F2 ENSG00000176925 CDS Human protein_coding chr11:4842723 chr11:4842727 nonsynonymous SNV 0.018 1 25 hm5C_associated_SNPs_101928 0 0 0 0 0 exosome 0.500231643921092 0.500231661524978 0 3.5207771365009e-08 hm5C_site_55073 DeepMRMD:0;iRNA_m5C:3.5207771365009e-08 55074 chr7 149570724 149570724 1 + A C rs117443760 149570727 - 149570707 149570747 41 CGCCGGCTCGGCCCGAAGCGCCCTGCGGACCCGCAGCCTGG CGCCGGCTCGGCCCGAAGCGCCCGGCGGACCCGCAGCCTGG < 41bp 0.429085968434921 0.800313632971835 0.04320112 0.5606648 prediction 0.600627265943669 Functional Gain - ATP6V0E2-AS1 ENSG00000204934 ncRNA_exonic Human antisense chr7:149570727 chr7:149570724 . . 0 24 hm5C_associated_SNPs_101929 0 0 0 0 0 unknown 0.500231804002621 0.500231643921093 0.1213296 0 hm5C_site_55074 DeepMRMD:0.1213296;iRNA_m5C:0 55075 chr13 113338008 113338008 1 + C A rs9603932 113338004 + 113337984 113338024 41 GAGACCACGGCTTATCCAGTCTCGCTCCTGACCTGCATCTG GAGACCACGGCTTATCCAGTCTCGATCCTGACCTGCATCTG < 41bp 0.444490146778671 0.800295681292242 0.046436757 0.16080734 prediction 0.600591362584484 Functional Gain - ATP11AUN ENSG00000197595 UTR3 Human lincRNA chr13:113338004 chr13:113338008 . . 0 25 hm5C_associated_SNPs_101930 0 0 0 1 0 unknown 0.500231672121184 0.500254640233445 0 4.59362245224249e-05 hm5C_site_55075 DeepMRMD:0;iRNA_m5C:4.59362245224249e-05 55076 chr14 59113348 59113348 1 + T G rs114768955 59113346 + 59113326 59113366 41 GGGAGGCGGTGGTGGCCAAACCTAAGCACAAGCGAACTGAC GGGAGGCGGTGGTGGCCAAACCGAAGCACAAGCGAACTGAC < 41bp 0.468606543868419 0.800261025963218 0.17364264 0.52051234 prediction 0.600522051926436 Functional Gain - DACT1 ENSG00000165617 CDS Human protein_coding chr14:59113346 chr14:59113348 synonymous SNV . 0 23 hm5C_associated_SNPs_101931 0 0 0 0 0 exosome 0.500231643921163 0.500231645011481 0.04102468 2.18063589407791e-09 hm5C_site_55076 DeepMRMD:0.04102468;iRNA_m5C:2.18063589407791e-09 55077 chr1 28203209 28203209 1 + C A LUSC 28203205 + 28203185 28203225 41 GTCTGTGAGAACCCGAAGACCAGCCAGACCATGGAGCTCGC GTCTGTGAGAACCCGAAGACCAGCAAGACCATGGAGCTCGC < 41bp 0.605653436473173 0.905869239895239 0.056820184 0.14840192 prediction 0.600431606844133 Functional Gain - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28203205 chr1:28203209 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_101932 0 0 0 0 0 chromatin 0.500231626918262 0.500231774870215 0 2.95903906488704e-07 hm5C_site_55077 DeepMRMD:0;iRNA_m5C:2.95903906488704e-07 55078 chrX 83129568 83129568 1 + T G LGG 83129566 + 83129546 83129586 41 TGCTTGTGAGCCTTCTCTACCATCACCAAAGGTCAGACGTC TGCTTGTGAGCCTTCTCTACCAGCACCAAAGGTCAGACGTC < 41bp 0.507487898552446 0.807700055349418 0.054442883 0.62967 prediction 0.600424313593944 Functional Gain - CYLC1 ENSG00000183035 CDS Human protein_coding chrX:83129566 chrX:83129568 nonsynonymous SNV 0.588 1 23 hm5C_associated_SNPs_101933 0 0 0 0 0 unknown 0.500231643921092 0.500231643909448 0.25934 0 hm5C_site_55078 DeepMRMD:0.25934;iRNA_m5C:0 55079 chr14 95030149 95030149 1 + C G ACC 95030148 + 95030128 95030168 41 GGGCCTGGGCTTCAACCTCACCGAGCTGTCTGAGTCCGATG GGGCCTGGGCTTCAACCTCACGGAGCTGTCTGAGTCCGATG < 41bp 0.496838521798409 0.800202876578206 0.029883206 0.7851915 prediction 0.600405753156413 Functional Gain - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95030148 chr14:95030149 synonymous SNV . 0 22 hm5C_associated_SNPs_101934 0 0 1 0 0 exosome 0.500231639376625 0.500231643921092 0.570383 9.08893516005094e-09 hm5C_site_55079 DeepMRMD:0.570383;iRNA_m5C:9.08893516005094e-09 55080 chr5 140501614 140501614 1 + C A STAD 140501610 + 140501590 140501630 41 CTAGGGAGAATTCATCCAAACAGGCAAGTGTTGGCCTTTAT CTAGGGAGAATTCATCCAAACAGGAAAGTGTTGGCCTTTAT < 41bp 0.565695561983062 0.865896111877568 0.24238783 0.2666462 prediction 0.600401099789014 Functional Gain - PCDHB4 ENSG00000081818 CDS Human protein_coding chr5:140501610 chr5:140501614 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_101935 0 0 0 0 0 exosome 0.500231919427038 0.500231643955521 0 0 hm5C_site_55080 DeepMRMD:0;iRNA_m5C:0 55081 chr10 124895758 124895758 1 + C A rs558356019 124895754 + 124895734 124895774 41 CGCGCCAGCCTCGGCTGCCGCCGCCGCCGCCGCTGCCGCTG CGCGCCAGCCTCGGCTGCCGCCGCAGCCGCCGCTGCCGCTG < 41bp 0.570909398366422 0.871107988649842 0.8597481 0.8269839 prediction 0.60039718056684 Functional Gain - HMX3 ENSG00000188620 CDS Human protein_coding chr10:124895754 chr10:124895758 synonymous SNV . 0 25 hm5C_associated_SNPs_101936 0 0 1 0 0 nucleolus 0.50023164380616 0.500231643921093 0 2.29865904088911e-10 hm5C_site_55081 DeepMRMD:0;iRNA_m5C:2.29865904088911e-10 55082 chr10 115534717 115534717 1 + C A LUAD 115534713 + 115534693 115534733 41 AATTGATTGGTGTCTTTCCCCTGCCGATGTGGAAGCACAGA AATTGATTGGTGTCTTTCCCCTGCAGATGTGGAAGCACAGA < 41bp 0.411799668461726 0.800197186536547 0.1038599 0.16527134 prediction 0.600394373073094 Functional Gain - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115534713 chr10:115534717 synonymous SNV . 0 25 hm5C_associated_SNPs_101937 0 0 0 0 2 exosome 0.500231644764233 0.500231643885711 0 0 hm5C_site_55082 DeepMRMD:0;iRNA_m5C:0 55083 chr22 21991122 21991122 1 + C A UCEC 21991118 + 21991098 21991138 41 GCAGGAACCAGCCACCCACACTGCCCAGGACCAGGCCACAG GCAGGAACCAGCCACCCACACTGCACAGGACCAGGCCACAG < 41bp 0.599983101063714 0.900172714555319 0.13473624 0.13868329 prediction 0.60037922698321 Functional Gain - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21991118 chr22:21991122 synonymous SNV . 0 25 hm5C_associated_SNPs_101938 0 0 0 0 0 nucleolus 0.50023164386235 0.500231644466115 0 1.20752874366303e-09 hm5C_site_55083 DeepMRMD:0;iRNA_m5C:1.20752874366303e-09 55084 chr8 33357916 33357916 1 + T G rs370105252 33357913 + 33357893 33357933 41 TGGCCTCCTGTAGCAGGGCGCTCTTAACAGACTCAGGTGTA TGGCCTCCTGTAGCAGGGCGCTCGTAACAGACTCAGGTGTA < 41bp 0.527671928909291 0.82785598690592 0.37810272 0.5578293 prediction 0.600368115993258 Functional Gain - TTI2 ENSG00000129696 CDS Human protein_coding chr8:33357913 chr8:33357916 nonsynonymous SNV 0.120 3 24 hm5C_associated_SNPs_101939 0 0 1 0 0 Nucleus 0.500231643919776 0.500231643902721 0.1156586 0 hm5C_site_55084 DeepMRMD:0.1156586;iRNA_m5C:0 55085 chr11 74716855 74716855 1 + T A LUSC 74716851 + 74716831 74716871 41 GTAAAACCAGGCCTCATTCTCTGATGATCTACAGTGATGAC GTAAAACCAGGCCTCATTCTCTGAAGATCTACAGTGATGAC < 41bp 0.508201855458387 0.80835628556542 0.41295037 0.23076272 prediction 0.600308860214065 Functional Gain - NEU3 ENSG00000162139 CDS Human protein_coding chr11:74716851 chr11:74716855 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_101940 0 0 1 0 0 Nucleus 0.500231470386943 0.500231642609545 0 3.4444520413679e-07 hm5C_site_55085 DeepMRMD:0;iRNA_m5C:3.4444520413679e-07 55086 chr14 52456295 52456295 1 + C A rs140907299 52456291 + 52456271 52456311 41 CGCGTCGCCGGTGCCTGCGCCTCCCGCTCCACCTCGCTTCT CGCGTCGCCGGTGCCTGCGCCTCCAGCTCCACCTCGCTTCT < 41bp 0.466554715941355 0.800139351426044 0.11669159 0.9584272 prediction 0.600278702852088 Functional Gain - C14orf166 ENSG00000087302 UTR5 Human protein_coding chr14:52456291 chr14:52456295 . . 0 25 hm5C_associated_SNPs_101941 0 0 1 0 0 Ribosome 0.500231651615666 0.500232066226048 0.9168544 8.29220763609584e-07 hm5C_site_55086 DeepMRMD:0.9168544;iRNA_m5C:8.29220763609584e-07 55087 chr16 23387172 23387172 1 + C A LUAD 23387168 + 23387148 23387188 41 CTGCAACAACCGGGACTTCCCAGACTGGGGTGAGCGGGGGC CTGCAACAACCGGGACTTCCCAGAATGGGGTGAGCGGGGGC < 41bp 0.593806750449499 0.893908479889571 0.56172633 0.5152318 prediction 0.600203458880143 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23387168 chr16:23387172 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_101942 0 0 0 0 1 exosome 0.500231629661382 0.500231643921101 0 2.85194379223697e-08 hm5C_site_55087 DeepMRMD:0;iRNA_m5C:2.85194379223697e-08 55088 chr13 42729866 42729866 1 + C A THCA 42729862 + 42729842 42729882 41 AACTGGTACGCCTGCTCCCACGCCCGACCCACCTTCTGTAA AACTGGTACGCCTGCTCCCACGCCAGACCCACCTTCTGTAA < 41bp 0.402466273163989 0.800095905023606 0.11932656 0.2983568 prediction 0.600191810047211 Functional Gain - DGKH ENSG00000102780 CDS Human protein_coding chr13:42729862 chr13:42729866 synonymous SNV . 0 25 hm5C_associated_SNPs_101943 0 0 0 0 2 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_55088 DeepMRMD:0;iRNA_m5C:0 55089 chr1 207002333 207002333 1 + C A rs533398127 207002329 + 207002309 207002349 41 ACAGGTGTGCATGAGGACTACAGGCAGGCATGTGCCAACAC ACAGGTGTGCATGAGGACTACAGGAAGGCATGTGCCAACAC < 41bp 0.453958033370133 0.800085879896352 0.21215388 0.27472788 prediction 0.600171759792703 Functional Gain - IL19 ENSG00000142224 UTR5 Human protein_coding chr1:207002329 chr1:207002333 . . 0 25 hm5C_associated_SNPs_101944 0 0 0 0 0 exosome 0.500228875854936 0.500231641867405 0 5.53202493747129e-06 hm5C_site_55089 DeepMRMD:0;iRNA_m5C:5.53202493747129e-06 55090 chr19 49464818 49464818 1 + C A OV 49464814 + 49464794 49464834 41 CCTCCTCTCCTACTTTGGGACGCCCACGTGGCAGACCGTGA CCTCCTCTCCTACTTTGGGACGCCAACGTGGCAGACCGTGA < 41bp 0.404806200122063 0.800081032016726 0.08776918 0.46302783 prediction 0.600162064033452 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49464814 chr19:49464818 synonymous SNV . 0 25 hm5C_associated_SNPs_101945 0 0 1 1 1 Cytosol 0.500231643921153 0.500231643921197 0 8.72635297355373e-14 hm5C_site_55090 DeepMRMD:0;iRNA_m5C:8.72635297355373e-14 55091 chr9 21409265 21409265 1 + C A LUAD 21409261 + 21409241 21409281 41 GGGCTGTGATCTGCCTCAGACTCACAGCCTGGGTAACAGGA GGGCTGTGATCTGCCTCAGACTCAAAGCCTGGGTAACAGGA < 41bp 0.415821058317586 0.800067669103851 0.029220015 0.10405174 prediction 0.600135338207702 Functional Gain - IFNA8 ENSG00000120242 CDS Human protein_coding chr9:21409261 chr9:21409265 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_101946 0 0 0 0 0 unknown 0.500231643999572 0.500231643922895 0 0 hm5C_site_55091 DeepMRMD:0;iRNA_m5C:0 55092 chr9 990732 990732 1 + C A OV 990728 + 990708 990748 41 TACTTTGGCGAGAAGCCAGTCGAGCCCCTTTTTGCCCAATG TACTTTGGCGAGAAGCCAGTCGAGACCCTTTTTGCCCAATG < 41bp 0.41200204212029 0.800038221975906 0.15954 0.27389854 prediction 0.600076443951813 Functional Gain - DMRT3 ENSG00000064218 CDS Human protein_coding chr9:990728 chr9:990732 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_101947 0 0 0 0 0 unknown 0.50023164389371 0.500231643921092 0 5.4764415224895e-11 hm5C_site_55092 DeepMRMD:0;iRNA_m5C:5.4764415224895e-11 55093 chr6 42985044 42985044 1 + T G TGCT 42985041 + 42985021 42985061 41 GGTTACTGCTCTGGTGAAGACTATGAGACACTGCGTCAGAT GGTTACTGCTCTGGTGAAGACTAGGAGACACTGCGTCAGAT < 41bp 0.426020502536933 0.800034501409411 0.018059492 0.03334087 prediction 0.600069002818821 Functional Gain - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42985041 chr6:42985044 stopgain 0.998 1 24 hm5C_associated_SNPs_101948 0 0 1 0 1 Ribosome 0.500231643412887 0.500231643921978 0 1.01818176112545e-09 hm5C_site_55093 DeepMRMD:0;iRNA_m5C:1.01818176112545e-09 55094 chr4 42403086 42403086 1 + T G SKCM 42403084 + 42403064 42403104 41 ATCTTCATTGCGTTCATCATCCTGGGCTCTGTAGTGGCTAT ATCTTCATTGCGTTCATCATCCGGGGCTCTGTAGTGGCTAT < 41bp 0.478023116507522 0.800033975132693 0.784516 0.93501616 prediction 0.600067950265385 Functional Gain - SHISA3 ENSG00000178343 CDS Human protein_coding chr4:42403084 chr4:42403086 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_101949 0 0 1 0 1 exosome 0.500231643921092 0.500231643921256 0.30100032 3.27071703054571e-13 hm5C_site_55094 DeepMRMD:0.30100032;iRNA_m5C:3.27071703054571e-13 55095 chr9 130965795 130965795 1 + C A rs61757224 130965791 + 130965771 130965811 41 GATCTCATCCCGCTGGTCAACCGGCTGCAAGACGCCTTCTC GATCTCATCCCGCTGGTCAACCGGATGCAAGACGCCTTCTC < 41bp 0.568512228233642 0.868465892439854 0.88620824 0.89875746 prediction 0.599907328412423 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130965791 chr9:130965795 nonsynonymous SNV 0.423 2 25 hm5C_associated_SNPs_101950 1 0 1 0 0 Endoplasmic reticulum 0.500231644243865 0.500231643919055 0.0250984400000001 0 hm5C_site_55095 DeepMRMD:0.0250984400000001;iRNA_m5C:0 not specified not specified 55096 chr3 122329499 122329499 1 + C A rs143268642 122329495 + 122329475 122329515 41 AGTAGGTAACATATTCATGACAAGCGGCTGCAATCTGGACT AGTAGGTAACATATTCATGACAAGAGGCTGCAATCTGGACT < 41bp 0.413546071364855 0.799946458130094 0.07861316 0.20193684 prediction 0.599892916260187 Functional Gain - PARP15 ENSG00000173200 CDS Human protein_coding chr3:122329495 chr3:122329499 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_101951 0 0 0 0 1 exosome 0.500231643921099 0.500231643922629 0 3.06044078968171e-12 hm5C_site_55096 DeepMRMD:0;iRNA_m5C:3.06044078968171e-12 55097 chr11 57958351 57958351 1 + T A LUSC 57958347 + 57958327 57958367 41 GCTACACGGCCGTGTGCCAGCCCCTGCTTTATGTCACCATC GCTACACGGCCGTGTGCCAGCCCCAGCTTTATGTCACCATC < 41bp 0.500977058603738 0.800910158620445 0.093679905 0.05610624 prediction 0.599866200033413 Functional Gain - OR9Q2 ENSG00000186513 CDS Human protein_coding chr11:57958347 chr11:57958351 nonsynonymous SNV 0.175 3 25 hm5C_associated_SNPs_101952 0 0 0 0 0 unknown 0.500231643717263 0.500231643562745 0 0 hm5C_site_55097 DeepMRMD:0;iRNA_m5C:0 55098 chr1 154218817 154218817 1 + C A UCEC 154218813 + 154218793 154218833 41 CGAAGCAGACTGCCATATCACAGCCTGCTTCAGGGAACACA CGAAGCAGACTGCCATATCACAGCATGCTTCAGGGAACACA < 41bp 0.398983292037399 0.799905802554392 0.26617563 0.200762 prediction 0.599811605108785 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154218813 chr1:154218817 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101953 0 0 1 0 1 Nucleus 0.500231850280552 0.500231643921177 0 0 hm5C_site_55098 DeepMRMD:0;iRNA_m5C:0 55099 chr20 60868982 60868982 1 + C A rs557223584 60868978 + 60868958 60868998 41 CTGGGGCCCGGGACCGGAGGCTGACGAGGCTGGACTTCCTC CTGGGGCCCGGGACCGGAGGCTGAAGAGGCTGGACTTCCTC < 41bp 0.583524300146858 0.883414297392955 0.76560354 0.83897394 prediction 0.599779994492193 Functional Gain - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60868978 chr20:60868982 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_101954 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921093 0.1467408 2.22044604925031e-16 hm5C_site_55099 DeepMRMD:0.1467408;iRNA_m5C:2.22044604925031e-16 55100 chr8 144102376 144102376 1 + T G LGG 144102373 + 144102353 144102393 41 CAGAATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTC CAGAATGAAGATCTTCTTGCCAGGGCTGCTGGCTGCCCTTC < 41bp 0.58889067629657 0.888771147128228 0.16596463 0.9360623 prediction 0.599760941663316 Functional Gain - LY6E ENSG00000160932 CDS Human protein_coding chr8:144102373 chr8:144102376 nonsynonymous SNV 0.352 2 24 hm5C_associated_SNPs_101955 0 0 1 6 3 Endoplasmic reticulum 0.500231644493448 0.500231643920947 0.8721246 0 hm5C_site_55100 DeepMRMD:0.8721246;iRNA_m5C:0 55101 chr11 61165269 61165269 1 + C A rs11230683 61165265 + 61165245 61165285 41 GGTACAAAGGGAAACCTCTGCCAGCGAAAGATGCCGCTCAG GGTACAAAGGGAAACCTCTGCCAGAGAAAGATGCCGCTCAG < 41bp 0.40830086915784 0.79987768267709 0.31255794 0.67342615 prediction 0.59975536535418 Functional Gain - TMEM216 ENSG00000187049 CDS Human protein_coding chr11:61165265 chr11:61165269 synonymous SNV . 0 25 hm5C_associated_SNPs_101956 1 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.3468523 0 hm5C_site_55101 DeepMRMD:0.3468523;iRNA_m5C:0 not specified not specified 55102 chr10 131565232 131565232 1 + T G HNSC 131565230 + 131565210 131565250 41 GCTCAAGGGAGCGGGAGCTACCTCGGGCTCCCCGCCTGCTG GCTCAAGGGAGCGGGAGCTACCGCGGGCTCCCCGCCTGCTG < 41bp 0.524402334691335 0.824255983066166 0.78440416 0.9301288 prediction 0.599707296749663 Functional Gain - MGMT ENSG00000170430 CDS Human protein_coding chr10:131565230 chr10:131565232 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_101957 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921096 0.29144928 6.88338275267597e-15 hm5C_site_55102 DeepMRMD:0.29144928;iRNA_m5C:6.88338275267597e-15 55103 chrX 27765735 27765735 1 + C G LGG 27765734 + 27765714 27765754 41 ACACTTTAACCAGCGTGGCACCCGGCTGGCCAGTAGCGGTG ACACTTTAACCAGCGTGGCACGCGGCTGGCCAGTAGCGGTG < 41bp 0.502829625830603 0.80266873502918 0.05672446 0.10092819 prediction 0.599678218397154 Functional Gain - DCAF8L2 ENSG00000189186 CDS Human protein_coding chrX:27765734 chrX:27765735 synonymous SNV . 0 22 hm5C_associated_SNPs_101958 0 0 0 0 0 exosome 0.500231643921075 0.500231643922859 0 3.56847884575018e-12 hm5C_site_55103 DeepMRMD:0;iRNA_m5C:3.56847884575018e-12 55104 chr2 234357877 234357877 1 + C A OV 234357873 + 234357853 234357893 41 GGCTGAAGATGGAGATGGGTCGGGCAGCATCTGCGGTTCCA GGCTGAAGATGGAGATGGGTCGGGAAGCATCTGCGGTTCCA < 41bp 0.589008922487569 0.888838789179152 0.85314107 0.8695191 prediction 0.599659733383166 Functional Gain - DGKD ENSG00000077044 CDS Human protein_coding chr2:234357873 chr2:234357877 synonymous SNV . 0 25 hm5C_associated_SNPs_101959 0 0 1 0 0 Nucleus 0.500231643903793 0.500231644103452 0.0327560600000001 3.99317023891399e-10 hm5C_site_55104 DeepMRMD:0.0327560600000001;iRNA_m5C:3.99317023891399e-10 55105 chr16 31341725 31341725 1 + T A UCEC 31341721 + 31341701 31341741 41 GCTACCCTCAAAGGCAACCTCTCGTTTGACTGGTACATCAA GCTACCCTCAAAGGCAACCTCTCGATTGACTGGTACATCAA < 41bp 0.544900773001547 0.844721231478266 0.1557324 0.9282379 prediction 0.599640916953438 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31341721 chr16:31341725 nonsynonymous SNV 0.616 3 25 hm5C_associated_SNPs_101960 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.8564758 0 hm5C_site_55105 DeepMRMD:0.8564758;iRNA_m5C:0 55106 chr5 63509804 63509804 1 + C A COAD 63509800 + 63509780 63509820 41 TTTTGTTCCCCAGCTTGTGACTGGCAGATGCGCTACAAGAG TTTTGTTCCCCAGCTTGTGACTGGAAGATGCGCTACAAGAG < 41bp 0.408227873100922 0.799814673977913 0.06194982 0.08578417 prediction 0.599629347955826 Functional Gain - RNF180 ENSG00000164197 CDS Human protein_coding chr5:63509800 chr5:63509804 synonymous SNV . 0 25 hm5C_associated_SNPs_101961 0 0 0 0 0 nucleus 0.500231643924622 0.500231585262891 0 0 hm5C_site_55106 DeepMRMD:0;iRNA_m5C:0 55107 chr10 50857604 50857604 1 + C A LUAD 50857600 + 50857580 50857620 41 GAGCAGACTCCGTCAGCGAGCTCCCCGCCCCCCGGAGGCTG GAGCAGACTCCGTCAGCGAGCTCCACGCCCCCCGGAGGCTG < 41bp 0.377543751013592 0.79981186246604 0.11026248 0.4939734 prediction 0.59962372493208 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50857600 chr10:50857604 nonsynonymous SNV 0.324 5 25 hm5C_associated_SNPs_101962 0 0 0 0 2 unknown 0.500231643921234 0.500231643921071 0 0 hm5C_site_55107 DeepMRMD:0;iRNA_m5C:0 55108 chr11 51515805 51515805 1 + T G UCEC 51515803 + 51515783 51515823 41 GGTCCTAATGTCATAGATCACTTTATGTGTGATCTGAACCC GGTCCTAATGTCATAGATCACTGTATGTGTGATCTGAACCC < 41bp 0.496688057842957 0.799796679653859 0.15103874 0.28884646 prediction 0.599593359307718 Functional Gain - OR4C46 ENSG00000185926 CDS Human protein_coding chr11:51515803 chr11:51515805 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_101963 0 0 0 0 0 unknown 0.500229824096887 0.500231440926839 0 3.23365990384517e-06 hm5C_site_55108 DeepMRMD:0;iRNA_m5C:3.23365990384517e-06 55109 chr2 26609349 26609349 1 + T A LUSC 26609345 + 26609325 26609365 41 CCTCTTACGTTGAGAGCATTCTCCTGTATACATTAACAACT CCTCTTACGTTGAGAGCATTCTCCAGTATACATTAACAACT < 41bp 0.532477382246203 0.832269714087816 0.108522296 0.9350652 prediction 0.599584663683227 Functional Gain - SELENOI ENSG00000138018 CDS Human protein_coding chr2:26609345 chr2:26609349 unknown 0.684 4 25 hm5C_associated_SNPs_101964 0 0 1 0 1 unknown 0.500231643933209 0.500231644019927 0.8701304 1.73435932282473e-10 hm5C_site_55109 DeepMRMD:0.8701304;iRNA_m5C:1.73435932282473e-10 55110 chr1 248636980 248636980 1 + T G LUAD 248636978 + 248636958 248636998 41 GGGATCCAGATGTTCTTCTACCTGACCCTGGCTGGAGCTGA GGGATCCAGATGTTCTTCTACCGGACCCTGGCTGGAGCTGA < 41bp 0.522242626484214 0.822001543145006 0.060410082 0.22643253 prediction 0.599517833321583 Functional Gain - OR2T3 ENSG00000196539 CDS Human protein_coding chr1:248636978 chr1:248636980 nonsynonymous SNV 0.147 2 23 hm5C_associated_SNPs_101965 0 0 0 0 0 unknown 0.500231643921094 0.50023164392108 0 0 hm5C_site_55110 DeepMRMD:0;iRNA_m5C:0 55111 chr20 9498735 9498735 1 + C G BRCA 9498734 + 9498714 9498754 41 ACCTCTCTGCCTTGGTCACCCCCGCTGGGAAGTCCTATGAG ACCTCTCTGCCTTGGTCACCCGCGCTGGGAAGTCCTATGAG < 41bp 0.507826329055753 0.807573483255031 0.07399404 0.28134012 prediction 0.599494308398556 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9498734 chr20:9498735 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_101966 0 0 0 0 1 exosome 0.50023164392017 0.500231643684803 0 0 hm5C_site_55111 DeepMRMD:0;iRNA_m5C:0 55112 chr6 292235 292235 1 + C A rs572468628 292231 + 292211 292251 41 AGCGAGGAGGGACGCTGGGCCTGCCCGGTGCGCACGGGGGC AGCGAGGAGGGACGCTGGGCCTGCACGGTGCGCACGGGGGC < 41bp 0.545459937265909 0.845189278453014 0.23177323 0.22004357 prediction 0.599458682374209 Functional Gain - DUSP22 ENSG00000112679 UTR5 Human protein_coding chr6:292231 chr6:292235 . . 0 25 hm5C_associated_SNPs_101967 0 0 1 0 0 Ribosome 0.500231643885643 0.500231643919303 0 6.73199274103808e-11 hm5C_site_55112 DeepMRMD:0;iRNA_m5C:6.73199274103808e-11 55113 chr18 10550152 10550152 1 + C A LGG 10550148 + 10550128 10550168 41 TCACCTGCAACACCACAGGCCAAGCCTGATGGTGTCACTGC TCACCTGCAACACCACAGGCCAAGACTGATGGTGTCACTGC < 41bp 0.42691211499399 0.799716918692913 0.13056993 0.18880433 prediction 0.599433837385827 Functional Gain - NAPG ENSG00000134265 CDS Human protein_coding chr18:10550148 chr18:10550152 nonsynonymous SNV 0.209 0 25 hm5C_associated_SNPs_101968 0 0 1 0 1 Cytosol 0.500231643925634 0.500231643909368 0 0 hm5C_site_55113 DeepMRMD:0;iRNA_m5C:0 55114 chr16 3109123 3109123 1 + C A rs193188076 3109119 + 3109099 3109139 41 ATGGGGGGAGCCATCCAGACCGAACAGCGCCCTCCACGGCC ATGGGGGGAGCCATCCAGACCGAAAAGCGCCCTCCACGGCC < 41bp 0.441426821909601 0.799710852419127 0.12482509 0.32508677 prediction 0.599421704838254 Functional Gain - MMP25-AS1 ENSG00000261971 ncRNA_exonic Human antisense chr16:3109119 chr16:3109123 . . 0 25 hm5C_associated_SNPs_101969 0 0 0 0 0 unknown 0.500231643921072 0.500231643921092 0 4.08562073062058e-14 hm5C_site_55114 DeepMRMD:0;iRNA_m5C:4.08562073062058e-14 55115 chr7 75614956 75614956 1 + C A SKCM 75614952 + 75614932 75614972 41 TGTGGAGTACGAGACCAAGGCTGGCCGCATCAACAAGGGCG TGTGGAGTACGAGACCAAGGCTGGACGCATCAACAAGGGCG < 41bp 0.596964105525187 0.89667411006057 0.5414859 0.7603035 prediction 0.599420009070766 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75614952 chr7:75614956 synonymous SNV . 0 25 hm5C_associated_SNPs_101970 0 0 1 0 1 Nucleus 0.50022784038513 0.500231642268305 0.4376352 7.60376635056126e-06 hm5C_site_55115 DeepMRMD:0.4376352;iRNA_m5C:7.60376635056126e-06 55116 chr15 90611125 90611125 1 + T G SKCM 90611122 + 90611102 90611142 41 GGCTTCGTGTGGCAGGAGGCCAGTGAGTTCGAGGCTGACAC GGCTTCGTGTGGCAGGAGGCCAGGGAGTTCGAGGCTGACAC < 41bp 0.40271201879305 0.799702702298543 0.8615839 0.9089273 prediction 0.599405404597086 Functional Gain - ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90611122 chr15:90611125 nonsynonymous SNV 0.013 0 24 hm5C_associated_SNPs_101971 0 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0.500231643921093 0.0946868000000001 0 hm5C_site_55116 DeepMRMD:0.0946868000000001;iRNA_m5C:0 55117 chr18 908347 908347 1 + C A rs148570945 908343 + 908323 908363 41 CGCCGGGAAGCACCTGCAGTCGCTCGTGGCCCGGGGCGTGG CGCCGGGAAGCACCTGCAGTCGCTAGTGGCCCGGGGCGTGG < 41bp 0.601706744052453 0.901391310391805 0.07652041 0.11561346 prediction 0.599369132678704 Functional Gain - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:908343 chr18:908347 synonymous SNV . 0 25 hm5C_associated_SNPs_101972 0 0 0 0 2 exosome 0.500231652364932 0.500231643921089 0 0 hm5C_site_55117 DeepMRMD:0;iRNA_m5C:0 55118 chr2 99012444 99012444 1 + C A SARC 99012440 + 99012420 99012460 41 TACTTAAAGGTGGGCACAAACTACCCAGAAGTGAGGTTCAA TACTTAAAGGTGGGCACAAACTACACAGAAGTGAGGTTCAA < 41bp 0.388517401939412 0.799611707665172 0.2646896 0.879918 prediction 0.599223415330343 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:99012440 chr2:99012444 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101973 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921186 0.759836 1.87405646556726e-13 hm5C_site_55118 DeepMRMD:0.759836;iRNA_m5C:1.87405646556726e-13 55119 chrX 128884472 128884472 1 + C A LUSC 128884468 + 128884448 128884488 41 CACTTGGCAGGAGAAAGTATCTGGCGTCCGAAGCCAGATGC CACTTGGCAGGAGAAAGTATCTGGAGTCCGAAGCCAGATGC < 41bp 0.597032584627524 0.896599924823997 0.90213 0.9193611 prediction 0.599134680392946 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128884468 chrX:128884472 synonymous SNV . 0 25 hm5C_associated_SNPs_101974 0 0 0 0 2 exosome 0.500231630718119 0.500231649749096 0.0344622000000001 3.80619535889082e-08 hm5C_site_55119 DeepMRMD:0.0344622000000001;iRNA_m5C:3.80619535889082e-08 55120 chr1 158813865 158813865 1 + C A LUAD 158813861 + 158813841 158813881 41 TCTGCAGCTGTGGATCATCCCCCACTACCCCAGACCTCATC TCTGCAGCTGTGGATCATCCCCCAATACCCCAGACCTCATC < 41bp 0.406447937871592 0.799539073410896 0.042396158 0.2437151 prediction 0.599078146821792 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813861 chr1:158813865 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101975 0 0 0 0 1 exosome 0.500231677229109 0.500231643994663 0 0 hm5C_site_55120 DeepMRMD:0;iRNA_m5C:0 55121 chr9 33918035 33918035 1 + C A rs143815819 33918031 + 33918011 33918051 41 TTTTAAAGGCAGGGTTATTTCCCCCCAGGGAGTGGGGCAAG TTTTAAAGGCAGGGTTATTTCCCCACAGGGAGTGGGGCAAG < 41bp 0.415806985057305 0.799534297415073 0.15386721 0.16561323 prediction 0.599068594830146 Functional Gain - UBE2R2 ENSG00000107341 UTR3 Human protein_coding chr9:33918031 chr9:33918035 . . 0 25 hm5C_associated_SNPs_101976 0 0 1 0 0 Cytosol 0.500231643921093 0.500231643921093 0 2.22044604925031e-16 hm5C_site_55121 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 55122 chr1 248112308 248112308 1 + T G LUAD 248112306 + 248112286 248112326 41 TCCATGATTCTTCTCATCTTCTTGGACACCCATCTCCACAC TCCATGATTCTTCTCATCTTCTGGGACACCCATCTCCACAC < 41bp 0.519945017589986 0.819475472165953 0.08681542 0.65970945 prediction 0.599060909151934 Functional Gain - OR2L8 ENSG00000196936 CDS Human other chr1:248112306 chr1:248112308 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_101977 0 0 0 0 0 unknown 0.500231643926749 0.500231643896177 0.3194189 0 hm5C_site_55122 DeepMRMD:0.3194189;iRNA_m5C:0 55123 chr1 167992241 167992241 1 + T G SKCM 167992238 + 167992218 167992258 41 TGTTTCAGATTCTCCTTCTTCTGTGGTTAACAAACAGCTCG TGTTTCAGATTCTCCTTCTTCTGGGGTTAACAAACAGCTCG < 41bp 0.439973956921078 0.79952706099221 0.26205137 0.8436076 prediction 0.599054121984421 Functional Gain - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:167992238 chr1:167992241 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_101978 0 0 1 0 1 Cytosol 0.500231646502248 0.500230924956792 0.6872152 0 hm5C_site_55123 DeepMRMD:0.6872152;iRNA_m5C:0 55124 chr19 13080464 13080464 1 + C A UCEC 13080460 + 13080440 13080480 41 CAGACAGACAGGCAGACAGACGCACGGACAAGCAGATGCTC CAGACAGACAGGCAGACAGACGCAAGGACAAGCAGATGCTC < 41bp 0.402059104539601 0.799524202481058 0.3577862 0.33137733 prediction 0.599048404962117 Functional Gain - DAND5 ENSG00000179284 CDS Human protein_coding chr19:13080460 chr19:13080464 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101979 0 0 0 0 0 Nucleus 0.500237918242764 0.500229801132096 0 0 hm5C_site_55124 DeepMRMD:0;iRNA_m5C:0 55125 chr9 75773694 75773694 1 + C A UCEC 75773690 + 75773670 75773710 41 CAATCCATCCTCGGATGTCGCTGCCTTGCATAAGGCCATAA CAATCCATCCTCGGATGTCGCTGCATTGCATAAGGCCATAA < 41bp 0.606279696230669 0.905769590203391 0.21872309 0.2196266 prediction 0.598979787945444 Functional Gain - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75773690 chr9:75773694 synonymous SNV . 0 25 hm5C_associated_SNPs_101980 0 0 1 0 2 Cytosol 0.500231643918152 0.500231643871962 0 0 hm5C_site_55125 DeepMRMD:0;iRNA_m5C:0 55126 chr11 55579676 55579676 1 + T A LAML 55579672 + 55579652 55579692 41 CCTTCTCCACCTGTGCTTCCCACCTCACAGCTATCACTGTC CCTTCTCCACCTGTGCTTCCCACCACACAGCTATCACTGTC < 41bp 0.498015794965901 0.799489037804078 0.018856823 0.010579586 prediction 0.598978075608156 Functional Gain - OR5L1 ENSG00000186117 CDS Human other chr11:55579672 chr11:55579676 nonsynonymous SNV 0.726 3 25 hm5C_associated_SNPs_101981 0 0 0 0 0 unknown 0.500231643212884 0.500231610332997 0 0 hm5C_site_55126 DeepMRMD:0;iRNA_m5C:0 55127 chrX 153627725 153627725 1 + C G LUSC 153627724 + 153627704 153627744 41 TACCCAAAGTCTCGCTTCTGCCGAGGTGTCCCTGGTAAGTA TACCCAAAGTCTCGCTTCTGCGGAGGTGTCCCTGGTAAGTA < 41bp 0.501591310670557 0.801056265587328 0.5234053 0.86523557 prediction 0.598929909833542 Functional Gain - RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627724 chrX:153627725 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_101982 0 0 1 0 1 Cytosol 0.500231655683077 0.500231639524705 0.68366054 0 hm5C_site_55127 DeepMRMD:0.68366054;iRNA_m5C:0 55128 chr2 181846838 181846838 1 + C A LUSC 181846834 + 181846814 181846854 41 CAGCAGTGGCAGTTCAGATGCGGACCAGCGAGACCCAGCCG CAGCAGTGGCAGTTCAGATGCGGAACAGCGAGACCCAGCCG < 41bp 0.59498718148241 0.894419026416049 0.5470147 0.81117344 prediction 0.598863689867278 Functional Gain - UBE2E3 ENSG00000170035 CDS Human protein_coding chr2:181846834 chr2:181846838 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_101983 0 0 0 0 1 Cytosol 0.500231875146523 0.500231644324923 0.52831748 0 hm5C_site_55128 DeepMRMD:0.52831748;iRNA_m5C:0 55129 chr1 11718859 11718859 1 + C A rs150816569 11718855 + 11718835 11718875 41 CGTTCAGCTCCTGTCGTCCGCGCACGCGCCTCTGGGGACCT CGTTCAGCTCCTGTCGTCCGCGCAAGCGCCTCTGGGGACCT < 41bp 0.398803477824238 0.799430134976467 0.29174566 0.39033094 prediction 0.598860269952934 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718855 chr1:11718859 nonsynonymous SNV 0.099 0 25 hm5C_associated_SNPs_101984 0 0 1 0 2 Nucleus 0.500231644076698 0.500231654866135 0 2.15788751312118e-08 hm5C_site_55129 DeepMRMD:0;iRNA_m5C:2.15788751312118e-08 55130 chr12 49950982 49950982 1 + T G rs11541357 49950979 + 49950959 49950999 41 CCCACAGAGAGCGGCCTGCTCACTGTTCCCCATGGGCCCAG CCCACAGAGAGCGGCCTGCTCACGGTTCCCCATGGGCCCAG < 41bp 0.595229296939064 0.894644916692423 0.15915555 0.6117414 prediction 0.598831239506718 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49950979 chr12:49950982 synonymous SNV . 0 24 hm5C_associated_SNPs_101985 0 0 0 0 2 chromatin 0.500231643921092 0.500231643921092 0.2234828 0 hm5C_site_55130 DeepMRMD:0.2234828;iRNA_m5C:0 55131 chr19 51650072 51650072 1 + C A LUAD 51650068 + 51650048 51650088 41 GGTCGGGGGAGCTGGAGCCACAGCCCTGGTCTTCCTCTCCT GGTCGGGGGAGCTGGAGCCACAGCACTGGTCTTCCTCTCCT < 41bp 0.598545907807186 0.897961214087335 0.41654995 0.5279839 prediction 0.598830612560298 Functional Gain - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51650068 chr19:51650072 synonymous SNV . 0 25 hm5C_associated_SNPs_101986 0 0 0 0 2 exosome 0.500231643921093 0.500231643921092 0.0559677999999999 0 hm5C_site_55131 DeepMRMD:0.0559677999999999;iRNA_m5C:0 55132 chr7 92027761 92027761 1 + T G ACC 92027759 + 92027739 92027779 41 TTGGAACTTGGTGACAGCCTCATGAGACTAGGAGCAGAGAA TTGGAACTTGGTGACAGCCTCAGGAGACTAGGAGCAGAGAA < 41bp 0.505738416927826 0.805123377665316 0.25646877 0.93032134 prediction 0.59876992147498 Functional Gain - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92027759 chr7:92027761 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_101987 0 0 1 0 0 Cytosol 0.500231643925463 0.500231644006894 0.86064268 1.62861057972918e-10 hm5C_site_55132 DeepMRMD:0.86064268;iRNA_m5C:1.62861057972918e-10 55133 chr16 72110334 72110334 1 + T A LUAD 72110330 + 72110310 72110350 41 ATCTCACCACAGGGGCCACGCTGATCAATGAACAATGGCTG ATCTCACCACAGGGGCCACGCTGAACAATGAACAATGGCTG < 41bp 0.496302355962856 0.799383055862411 0.20351905 0.11775294 prediction 0.598766111724822 Functional Gain - HPR ENSG00000261701 CDS Human protein_coding chr16:72110330 chr16:72110334 nonsynonymous SNV 0.876 5 25 hm5C_associated_SNPs_101988 0 0 1 0 0 nucleus 0.50014955716748 0.500232224647002 0 0.00016533495904536 hm5C_site_55133 DeepMRMD:0;iRNA_m5C:0.00016533495904536 55134 chr16 84230345 84230345 1 + T G LUAD 84230343 + 84230323 84230363 41 GCTGTGGGGAAGCCCTACCTCCTGGCCTTGAAGACCTACGA GCTGTGGGGAAGCCCTACCTCCGGGCCTTGAAGACCTACGA < 41bp 0.467217612991178 0.799382637302475 0.3316283 0.922358 prediction 0.598765274604951 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84230343 chr16:84230345 nonsynonymous SNV 0.192 4 23 hm5C_associated_SNPs_101989 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.844716 0 hm5C_site_55134 DeepMRMD:0.844716;iRNA_m5C:0 55135 chr1 248262938 248262938 1 + C A LUSC 248262934 + 248262914 248262954 41 GATGGCGTACAACTTCCTGTCCGGCCAGAAAGGCATCTCCT GATGGCGTACAACTTCCTGTCCGGACAGAAAGGCATCTCCT < 41bp 0.425107067973516 0.799380770047477 0.08242121 0.15421864 prediction 0.598761540094953 Functional Gain - OR2L13 ENSG00000196071 CDS Human protein_coding chr1:248262934 chr1:248262938 synonymous SNV . 0 25 hm5C_associated_SNPs_101990 0 0 0 0 0 Nucleus 0.500231542540224 0.500223931190194 0 0 hm5C_site_55135 DeepMRMD:0;iRNA_m5C:0 55136 chr3 42727282 42727282 1 + T A SKCM 42727278 + 42727258 42727298 41 GTGCTGGCCGCCTGCAGCCCCTACTTCCGGGCGCGCTTTCT GTGCTGGCCGCCTGCAGCCCCTACATCCGGGCGCGCTTTCT < 41bp 0.504361179086558 0.803721601044093 0.047355503 0.9147787 prediction 0.59872084391507 Functional Gain - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42727278 chr3:42727282 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_101991 0 0 0 0 0 unknown 0.500232236057522 0.50023866736942 0.8295574 1.28626237971829e-05 hm5C_site_55136 DeepMRMD:0.8295574;iRNA_m5C:1.28626237971829e-05 55137 chr17 39261929 39261929 1 + C A rs532380081 39261925 + 39261905 39261945 41 TGCTGCAGGCCCCAGTGCTGCCAGCCTGCGTGCTGCCAACC TGCTGCAGGCCCCAGTGCTGCCAGACTGCGTGCTGCCAACC < 41bp 0.434394163276495 0.799344270609527 0.18202111 0.37989298 prediction 0.598688541219054 Functional Gain - KRTAP4-9 ENSG00000212722 CDS Human protein_coding chr17:39261925 chr17:39261929 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_101992 0 0 0 0 0 unknown 0.500231643793884 0.500231424356692 0 0 hm5C_site_55137 DeepMRMD:0;iRNA_m5C:0 55138 chr16 27232769 27232769 1 + C A rs76839117 27232765 + 27232745 27232785 41 ATGGCTCAAGGATAACCTACCTGCCTGCAGAGAAGTGCGAA ATGGCTCAAGGATAACCTACCTGCATGCAGAGAAGTGCGAA < 41bp 0.4498092633734 0.799334321412856 0.077202916 0.15341243 prediction 0.598668642825711 Functional Gain - KDM8 ENSG00000155666 UTR3 Human protein_coding chr16:27232765 chr16:27232769 . . 0 25 hm5C_associated_SNPs_101993 0 0 1 0 0 nucleolus 0.500231643928085 0.500182236635276 0 0 hm5C_site_55138 DeepMRMD:0;iRNA_m5C:0 55139 chr22 42293112 42293112 1 + T G rs145703964 42293109 + 42293089 42293129 41 ACTTCATTCTTTTGTGGACTCTGTGGGGGTTATGAGCCCCC ACTTCATTCTTTTGTGGACTCTGGGGGGGTTATGAGCCCCC < 41bp 0.420545299403652 0.799319048564235 0.12016702 0.41697472 prediction 0.598638097128469 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42293109 chr22:42293112 nonsynonymous SNV 0.995 2 24 hm5C_associated_SNPs_101994 0 0 1 0 2 Ribosome 0.500231643922373 0.500231643921093 0 0 hm5C_site_55139 DeepMRMD:0;iRNA_m5C:0 55140 chr12 53457704 53457704 1 + C A rs34922637 53457700 + 53457680 53457720 41 GCTCAGAGCCCACATCAACACTGCCCCCCTCCCAGCACCCC GCTCAGAGCCCACATCAACACTGCACCCCTCCCAGCACCCC < 41bp 0.41151739704527 0.799317564178667 0.034744233 0.024613112 prediction 0.598635128357334 Functional Gain - TNS2 ENSG00000111077 UTR3 Human protein_coding chr12:53457700 chr12:53457704 . . 0 25 hm5C_associated_SNPs_101995 0 0 0 4 0 cytosol 0.500231643921091 0.500231643921101 0 1.90958360235527e-14 hm5C_site_55140 DeepMRMD:0;iRNA_m5C:1.90958360235527e-14 55141 chr14 74416832 74416832 1 + G T rs111833521 74416836 - 74416816 74416856 41 AGGCTGCCCTGGAAGCCAACCAGACGCCAAAGCTAGAAAGG AGGCTGCCCTGGAAGCCAACCAGAAGCCAAAGCTAGAAAGG < 41bp 0.420919858864934 0.799304458410222 0.7490527 0.7760701 prediction 0.598608916820444 Functional Gain - COQ6;FAM161B ENSG00000119723;ENSG00000156050 CDS Human other chr14:74416836 chr14:74416832 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_101996 1 0 0 0 0 unknown 0.500231643921773 0.500231643921093 0.0540347999999999 0 hm5C_site_55141 DeepMRMD:0.0540347999999999;iRNA_m5C:0 not specified not specified 55142 chr2 171687681 171687681 1 + T A SKCM 171687677 + 171687657 171687697 41 ATCCTGGTTGACTGCAGAGACACCTTGAAGTATGGGGTTCG ATCCTGGTTGACTGCAGAGACACCATGAAGTATGGGGTTCG < 41bp 0.469704342090804 0.799298156989154 0.04764062 0.11143941 prediction 0.598596313978309 Functional Gain - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171687677 chr2:171687681 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_101997 0 0 1 0 1 Cytosol 0.500231643923101 0.500231640186416 0 0 hm5C_site_55142 DeepMRMD:0;iRNA_m5C:0 55143 chr22 33255299 33255299 1 + T A SKCM 33255295 + 33255275 33255315 41 GCCTGCATCCGGCAGAAGGGCGGCTACTGCAGCTGGTACCG GCCTGCATCCGGCAGAAGGGCGGCAACTGCAGCTGGTACCG < 41bp 0.512772526542297 0.812069933014013 0.9115711 0.91492724 prediction 0.598594812943432 Functional Gain - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33255295 chr22:33255299 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_101998 0 0 1 0 0 Ribosome 0.500231643921148 0.500231643921819 0.00671228000000013 1.34137145835211e-12 hm5C_site_55143 DeepMRMD:0.00671228000000013;iRNA_m5C:1.34137145835211e-12 55144 chrX 37027154 37027154 1 + C A LUAD 37027150 + 37027130 37027170 41 AGACTGGAGTGTCCCATCTCCGCCCACAGCCTCCCAAGACT AGACTGGAGTGTCCCATCTCCGCCAACAGCCTCCCAAGACT < 41bp 0.401434936441724 0.79929187183487 0.18997258 0.31828672 prediction 0.59858374366974 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37027150 chrX:37027154 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_101999 0 0 0 0 0 unknown 0.500231667556355 0.500231644384817 0 0 hm5C_site_55144 DeepMRMD:0;iRNA_m5C:0 55145 chr1 25617202 25617202 1 + T A COAD 25617198 + 25617178 25617218 41 GATGCTGTCTTGGGGAAGGTCAACTTGGCGCAGTTGGTGGT GATGCTGTCTTGGGGAAGGTCAACATGGCGCAGTTGGTGGT < 41bp 0.520632811072329 0.81989980191234 0.43028027 0.47509247 prediction 0.598533981680021 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25617198 chr1:25617202 nonsynonymous SNV 0.178 3 25 hm5C_associated_SNPs_102000 0 0 1 0 2 Nucleus 0.500231643044589 0.500231643478271 0 8.67362848211428e-10 hm5C_site_55145 DeepMRMD:0;iRNA_m5C:8.67362848211428e-10 55146 chr1 152770592 152770592 1 + C A LUAD 152770588 + 152770568 152770608 41 AGCTGCTGCGGTGGGGGCAGCAGCCAGCACTCTGGAGGCTG AGCTGCTGCGGTGGGGGCAGCAGCAAGCACTCTGGAGGCTG < 41bp 0.581157672308615 0.880395260931209 0.76620024 0.76993454 prediction 0.598475177245189 Functional Gain - LCE1D ENSG00000172155 CDS Human protein_coding chr1:152770588 chr1:152770592 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_102001 0 0 0 0 0 unknown 0.50023164412762 0.500231341907103 0.00746859999999994 0 hm5C_site_55146 DeepMRMD:0.00746859999999994;iRNA_m5C:0 55147 chr11 123900645 123900645 1 + C A UCEC 123900641 + 123900621 123900661 41 GCTCAGCTCTATTTCTTTCACTTCCTAGGGGGCACCGAGTG GCTCAGCTCTATTTCTTTCACTTCATAGGGGGCACCGAGTG < 41bp 0.413307133208229 0.799222119752392 0.026213199 0.08557725 prediction 0.598444239504784 Functional Gain - OR10G8 ENSG00000234560 CDS Human protein_coding chr11:123900641 chr11:123900645 nonsynonymous SNV 0.448 3 25 hm5C_associated_SNPs_102002 0 0 0 0 0 unknown 0.500231643920982 0.500231644725283 0 1.60860302855781e-09 hm5C_site_55147 DeepMRMD:0;iRNA_m5C:1.60860302855781e-09 55148 chr3 178947851 178947851 1 + T G ESCA 178947849 + 178947829 178947869 41 GCTGGATACTGTGTAGCTACCTTCATTTTGGGAATTGGAGA GCTGGATACTGTGTAGCTACCTGCATTTTGGGAATTGGAGA < 41bp 0.50485228881148 0.804073079889728 0.24335241 0.16604748 prediction 0.598441582156496 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947849 chr3:178947851 nonsynonymous SNV 0.907 4 23 hm5C_associated_SNPs_102003 0 0 1 0 2 Ribosome 0.500231647054345 0.500231634534844 0 0 hm5C_site_55148 DeepMRMD:0;iRNA_m5C:0 55149 chr11 55861565 55861565 1 + C A LUAD 55861561 + 55861541 55861581 41 CTCTGATTTTCACCTATTTGCAACCTGATAACACATCATCG CTCTGATTTTCACCTATTTGCAACATGATAACACATCATCG < 41bp 0.435538128999261 0.799205836853737 0.026736766 0.015294284 prediction 0.598411673707473 Functional Gain - OR8I2 ENSG00000172154 CDS Human protein_coding chr11:55861561 chr11:55861565 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_102004 0 0 0 0 0 unknown 0.500231643921053 0.500231649048603 0 1.02550996583517e-08 hm5C_site_55149 DeepMRMD:0;iRNA_m5C:1.02550996583517e-08 55150 chr19 47823131 47823131 1 + C A UCEC 47823127 + 47823107 47823147 41 CCTGTGGATAAAACTTCTAACACGCTGCGTGTTCCAGACAT CCTGTGGATAAAACTTCTAACACGATGCGTGTTCCAGACAT < 41bp 0.588140283775371 0.887332821256856 0.038822383 0.07027945 prediction 0.59838507496297 Functional Gain - C5AR1 ENSG00000197405 CDS Human protein_coding chr19:47823127 chr19:47823131 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_102005 0 0 1 0 1 chromatin 0.500231643920777 0.500231618195346 0 0 hm5C_site_55150 DeepMRMD:0;iRNA_m5C:0 55151 chr2 10059866 10059866 1 + T G SKCM 10059864 + 10059844 10059884 41 CGTGTTTCCATGGACACAGCCTTCAGGGAGTCCTGAAAGAG CGTGTTTCCATGGACACAGCCTGCAGGGAGTCCTGAAAGAG < 41bp 0.502972817121507 0.802163633865393 0.084695905 0.18020192 prediction 0.598381633487773 Functional Gain - TAF1B ENSG00000115750 CDS Human protein_coding chr2:10059864 chr2:10059866 synonymous SNV . 0 23 hm5C_associated_SNPs_102006 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.50023164392087 0 0 hm5C_site_55151 DeepMRMD:0;iRNA_m5C:0 55152 chr19 30934842 30934842 1 + C A LUAD 30934838 + 30934818 30934858 41 ATGAGCGACATCGAGGACGACGCCCGCAAGAACCGCAAGTA ATGAGCGACATCGAGGACGACGCCAGCAAGAACCGCAAGTA < 41bp 0.386278701754926 0.79917349046172 0.13451323 0.33256856 prediction 0.598346980923441 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934838 chr19:30934842 nonsynonymous SNV 0.988 3 25 hm5C_associated_SNPs_102007 0 0 0 0 0 exosome 0.500460825955838 0.500231643872455 0 0 hm5C_site_55152 DeepMRMD:0;iRNA_m5C:0 55153 chr3 127398836 127398836 1 + C G rs201126833 127398835 + 127398815 127398855 41 GTCTTCACTGCAGCTGTCCCCCGAGGCAGCCTATGATGTGC GTCTTCACTGCAGCTGTCCCCGGAGGCAGCCTATGATGTGC < 41bp 0.494152042799023 0.799128898584305 0.48344636 0.94314796 prediction 0.59825779716861 Functional Gain - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127398835 chr3:127398836 synonymous SNV . 0 22 hm5C_associated_SNPs_102008 0 0 0 0 1 exosome 0.500147137271619 0.500231639295043 0.88629592 0.000169004046848054 hm5C_site_55153 DeepMRMD:0.88629592;iRNA_m5C:0.000169004046848054 55154 chr1 167599533 167599533 1 + C A rs3738220 167599529 + 167599509 167599549 41 CGAGCGCAGCCGGGCGCGCGCCACCGCCCACTCGCCCTGTG CGAGCGCAGCCGGGCGCGCGCCACAGCCCACTCGCCCTGTG < 41bp 0.488298498090886 0.799103366121127 0.20428061 0.115357846 prediction 0.598206732242254 Functional Gain - RCSD1 ENSG00000241666 ncRNA_intronic Human antisense chr1:167599529 chr1:167599533 . . 0 25 hm5C_associated_SNPs_102009 0 0 1 0 0 chromatin 0.500231083881801 0.500231647791285 0 1.12781896799419e-06 hm5C_site_55154 DeepMRMD:0;iRNA_m5C:1.12781896799419e-06 55155 chr6 90604236 90604236 1 + C A SARC 90604232 + 90604212 90604252 41 GGCATCCTAGAGGAAGTTCACTCCCACTCAACCATAGTGGG GGCATCCTAGAGGAAGTTCACTCCAACTCAACCATAGTGGG < 41bp 0.409897154556233 0.799089535684651 0.1981388 0.8573319 prediction 0.598179071369302 Functional Gain - GJA10 ENSG00000135355 CDS Human protein_coding chr6:90604232 chr6:90604236 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_102010 0 0 0 0 0 unknown 0.500231643921092 0.500231643954094 0.7146638 6.60043131262e-11 hm5C_site_55155 DeepMRMD:0.7146638;iRNA_m5C:6.60043131262e-11 55156 chr11 36484051 36484051 1 + C A LUAD 36484047 + 36484027 36484067 41 AGTGTGGCAGCGTGCGGCGGCACACGGTGGCCAATGCCCAC AGTGTGGCAGCGTGCGGCGGCACAAGGTGGCCAATGCCCAC < 41bp 0.413074393292495 0.799078624763046 0.27857348 0.42720136 prediction 0.598157249526093 Functional Gain - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36484047 chr11:36484051 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_102011 0 0 0 0 0 Nucleus 0.500231446394092 0.500199991661954 0 0 hm5C_site_55156 DeepMRMD:0;iRNA_m5C:0 55157 chr7 143748341 143748341 1 + C A GBM 143748337 + 143748317 143748357 41 TCCCTGTTTTACAGCCTTTTCAACCCGATGCTGAACCCCTT TCCCTGTTTTACAGCCTTTTCAACACGATGCTGAACCCCTT < 41bp 0.424554386772014 0.799078027146871 0.06525001 0.08075532 prediction 0.598156054293742 Functional Gain - OR2A5 ENSG00000221836 CDS Human protein_coding chr7:143748337 chr7:143748341 nonsynonymous SNV 0.967 3 25 hm5C_associated_SNPs_102012 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_55157 DeepMRMD:0;iRNA_m5C:0 55158 chr19 35173717 35173717 1 + T A BRCA 35173713 + 35173693 35173733 41 TGATGTGGCTATAGACTTCTCTCATGAAGAGTGGGCATGCC TGATGTGGCTATAGACTTCTCTCAAGAAGAGTGGGCATGCC < 41bp 0.482740890847315 0.79907397597708 0.03184536 0.11398855 prediction 0.59814795195416 Functional Gain - ZNF302 ENSG00000089335 CDS Human protein_coding chr19:35173713 chr19:35173717 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_102013 0 0 0 0 2 exosome 0.500231620289239 0.500231643921097 0 4.72637158299705e-08 hm5C_site_55158 DeepMRMD:0;iRNA_m5C:4.72637158299705e-08 55159 chr2 103324646 103324646 1 + C A LUAD 103324642 + 103324622 103324662 41 CTCAATTTGCAGCCCAGAGCCAGGCGCTTCTTGCCAGAACA CTCAATTTGCAGCCCAGAGCCAGGAGCTTCTTGCCAGAACA < 41bp 0.586953391752243 0.886012992202214 0.84147644 0.9034296 prediction 0.598119200899942 Functional Gain - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103324642 chr2:103324646 nonsynonymous SNV 0.946 0 25 hm5C_associated_SNPs_102014 0 0 0 0 1 Ribosome 0.500231642550273 0.500231643919791 0.12390632 2.73903522085561e-09 hm5C_site_55159 DeepMRMD:0.12390632;iRNA_m5C:2.73903522085561e-09 55160 chr17 59479274 59479274 1 + C A UCEC 59479270 + 59479250 59479290 41 GCTAAGCCTGTGGCCTTCCACAAGCTGAAGCTGACCAACAA GCTAAGCCTGTGGCCTTCCACAAGATGAAGCTGACCAACAA < 41bp 0.600516290852264 0.899573615845433 0.8097149 0.86544585 prediction 0.598114649986338 Functional Gain - TBX2 ENSG00000121068 CDS Human protein_coding chr17:59479270 chr17:59479274 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_102015 0 0 0 0 1 Cytosol 0.500205717686254 0.500231645883308 0.1114619 5.18563941094285e-05 hm5C_site_55160 DeepMRMD:0.1114619;iRNA_m5C:5.18563941094285e-05 55161 chr9 107267037 107267037 1 + C A LUSC 107267033 + 107267013 107267053 41 TGGTGGAAATGATGTCTGTGCTGCCACTGTCTCTCTGTGGT TGGTGGAAATGATGTCTGTGCTGCAACTGTCTCTCTGTGGT < 41bp 0.414921200458439 0.799032210220205 0.12135294 0.06726828 prediction 0.59806442044041 Functional Gain - OR13F1 ENSG00000186881 CDS Human protein_coding chr9:107267033 chr9:107267037 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_102016 0 0 0 0 0 unknown 0.500231643936815 0.500600489987755 0 0.000737692101880683 hm5C_site_55161 DeepMRMD:0;iRNA_m5C:0.000737692101880683 55162 chr13 53608558 53608558 1 + T A HNSC 53608554 + 53608534 53608574 41 TCTGTTTCCCTGCCAGACACCACCTTTCCCGTGGACAGAGT TCTGTTTCCCTGCCAGACACCACCATTCCCGTGGACAGAGT < 41bp 0.535596459006697 0.834618404303453 0.020253152 0.029988497 prediction 0.598043890593513 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53608554 chr13:53608558 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_102017 0 0 0 0 2 exosome 0.500231643924117 0.500231643921195 0 0 hm5C_site_55162 DeepMRMD:0;iRNA_m5C:0 55163 chr19 55858564 55858564 1 + C A rs543269679 55858560 + 55858540 55858580 41 AGGCCCTGGTGGCCCTGGGCCAGCCCCCCCACGCCCGCTGG AGGCCCTGGTGGCCCTGGGCCAGCACCCCCACGCCCGCTGG < 41bp 0.581684137285906 0.880697582543566 0.3904435 0.56637627 prediction 0.598026890515321 Functional Gain - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55858560 chr19:55858564 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_102018 0 0 0 0 0 chromatin 0.500231643920974 0.500231643921087 0.13275254 2.26485497023532e-13 hm5C_site_55163 DeepMRMD:0.13275254;iRNA_m5C:2.26485497023532e-13 55164 chr7 128370057 128370057 1 + C A COAD 128370053 + 128370033 128370073 41 TGGGAAAGAGAGAACCCCTCCGGCCTGCAGCCCCTCTCACT TGGGAAAGAGAGAACCCCTCCGGCATGCAGCCCCTCTCACT < 41bp 0.602438552974332 0.901439677026521 0.7929911 0.8080658 prediction 0.598002248104378 Functional Gain - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128370053 chr7:128370057 nonsynonymous SNV 0.308 0 25 hm5C_associated_SNPs_102019 0 0 0 0 1 exosome 0.500231643921092 0.500231643921088 0.0301494 0 hm5C_site_55164 DeepMRMD:0.0301494;iRNA_m5C:0 55165 chr4 189061099 189061099 1 + C A rs138508820 189061095 + 189061075 189061115 41 TGCAAACAGAGTGCATCTCTCCAGCGAGGCTGAGGAGCATC TGCAAACAGAGTGCATCTCTCCAGAGAGGCTGAGGAGCATC < 41bp 0.424146028228352 0.798983178720861 0.56791663 0.86481434 prediction 0.597966357441722 Functional Gain - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189061095 chr4:189061099 nonsynonymous SNV 0.537 1 25 hm5C_associated_SNPs_102020 0 0 0 0 0 nucleus 0.50023164391881 0.500231643939715 0.59379542 4.18096668397538e-11 hm5C_site_55165 DeepMRMD:0.59379542;iRNA_m5C:4.18096668397538e-11 55166 chr2 108910141 108910141 1 + C A LUAD 108910137 + 108910117 108910157 41 AGACACTATGGCCCTGACCTCAGACCTGGGGAAACAGATAA AGACACTATGGCCCTGACCTCAGAACTGGGGAAACAGATAA < 41bp 0.429040790782667 0.798973112369724 0.5481333 0.4413544 prediction 0.597946224739447 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910137 chr2:108910141 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_102021 0 0 0 0 1 exosome 0.500231643908688 0.500231643920988 0 2.45987674674097e-11 hm5C_site_55166 DeepMRMD:0;iRNA_m5C:2.45987674674097e-11 55167 chr4 156839316 156839316 1 + T G COAD 156839314 + 156839294 156839334 41 TGCCTAGATAACCATGTGTGCATGGTGCACAGAATGCTGGG TGCCTAGATAACCATGTGTGCAGGGTGCACAGAATGCTGGG < 41bp 0.541572661004827 0.840542759834823 0.33968204 0.873384 prediction 0.597940197659993 Functional Gain - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156839314 chr4:156839316 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_102022 0 0 0 0 2 exosome 0.500231643817036 0.500231643921092 0.746768 2.0811286027822e-10 hm5C_site_55167 DeepMRMD:0.746768;iRNA_m5C:2.0811286027822e-10 55168 chr1 238090462 238090462 1 + C A LUAD 238090458 + 238090438 238090478 41 GCTGCTGATCGAGGCCTGCCCGAACCCCAAGGCCAACAGAG GCTGCTGATCGAGGCCTGCCCGAAACCCAAGGCCAACAGAG < 41bp 0.425994183407804 0.798940846569502 0.32212874 0.5039275 prediction 0.597881693139003 Functional Gain - LOC100130331 ENSG00000237250;ENSG00000243781 ncRNA_exonic Human other chr1:238090458 chr1:238090462 . . 0 25 hm5C_associated_SNPs_102023 0 0 1 0 0 unknown 0.500231665205291 0.500231643929688 0.00785499999999995 0 hm5C_site_55168 DeepMRMD:0.00785499999999995;iRNA_m5C:0 55169 chrX 101821980 101821980 1 + C A LUSC 101821976 + 101821956 101821996 41 CACCTGCTTCCTCCCTCAGTCAGGCCCAGAGAGCTGAAGTA CACCTGCTTCCTCCCTCAGTCAGGACCAGAGAGCTGAAGTA < 41bp 0.422523606363796 0.798934763321266 0.6442101 0.64991766 prediction 0.597869526642531 Functional Gain - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101821976 chrX:101821980 . . 0 25 hm5C_associated_SNPs_102024 0 0 0 0 0 unknown 0.500231645859502 0.50023164392112 0.0114151199999999 0 hm5C_site_55169 DeepMRMD:0.0114151199999999;iRNA_m5C:0 55170 chr2 37459358 37459358 1 + T A STAD 37459354 + 37459334 37459374 41 TATGTACAAAATAAAGTCTACTGGTCCCATCACTGTGGCCG TATGTACAAAATAAAGTCTACTGGACCCATCACTGTGGCCG < 41bp 0.490362171974817 0.798926519926053 0.07233226 0.13053805 prediction 0.597853039852105 Functional Gain - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37459354 chr2:37459358 synonymous SNV . 0 25 hm5C_associated_SNPs_102025 0 0 1 1 1 chromatin 0.500231604867654 0.500231642344546 0 7.49537845123882e-08 hm5C_site_55170 DeepMRMD:0;iRNA_m5C:7.49537845123882e-08 55171 chr11 55944236 55944236 1 + T A GBM 55944232 + 55944212 55944252 41 TGAGGAATCTGGGCATGATCCTCTTAATCCAAATCACCTCC TGAGGAATCTGGGCATGATCCTCTAAATCCAAATCACCTCC < 41bp 0.497296187209439 0.798918812973266 0.434197 0.9643673 prediction 0.597837625946532 Functional Gain - OR5J2 ENSG00000174957 CDS Human protein_coding chr11:55944232 chr11:55944236 stopgain 0.000 0 25 hm5C_associated_SNPs_102026 0 0 0 0 0 unknown 0.500231643748678 0.500231643823651 0.9287346 1.49946277616664e-10 hm5C_site_55171 DeepMRMD:0.9287346;iRNA_m5C:1.49946277616664e-10 55172 chr19 54080951 54080951 1 + C A LUSC 54080947 + 54080927 54080967 41 TCAGCACGAGAGAATCCACACAGGCGAAACCCCGTATAAAT TCAGCACGAGAGAATCCACACAGGAGAAACCCCGTATAAAT < 41bp 0.42467863966936 0.798898235154886 0.3598156 0.31484583 prediction 0.597796470309772 Functional Gain - ZNF331 ENSG00000130844 CDS Human protein_coding chr19:54080947 chr19:54080951 synonymous SNV . 0 25 hm5C_associated_SNPs_102027 0 0 0 0 0 Nucleus 0.500231643922017 0.500231643921422 0 0 hm5C_site_55172 DeepMRMD:0;iRNA_m5C:0 55173 chr10 99359524 99359524 1 + C A THCA 99359520 + 99359500 99359540 41 CTGCCTGTGGATGCAGTGGTCACGCTTTCCCAGCACCCGAA CTGCCTGTGGATGCAGTGGTCACGATTTCCCAGCACCCGAA < 41bp 0.589438746925898 0.88830208331276 0.45369354 0.35436422 prediction 0.597726672773723 Functional Gain - HOGA1 ENSG00000241935 CDS Human protein_coding chr10:99359520 chr10:99359524 nonsynonymous SNV 0.265 5 25 hm5C_associated_SNPs_102028 0 0 0 0 2 nucleus 0.500231643934109 0.500231643893391 0 0 hm5C_site_55173 DeepMRMD:0;iRNA_m5C:0 55174 chrX 82763742 82763742 1 + C A CESC 82763738 + 82763718 82763758 41 AACCCCTCAACGTGTACTCGCAGCCTGGCTTCACCGTGAGC AACCCCTCAACGTGTACTCGCAGCATGGCTTCACCGTGAGC < 41bp 0.412260576198269 0.7988227586957 0.26487145 0.25417894 prediction 0.597645517391401 Functional Gain - POU3F4 ENSG00000196767 CDS Human protein_coding chrX:82763738 chrX:82763742 nonsynonymous SNV 0.965 2 25 hm5C_associated_SNPs_102029 0 0 0 0 0 unknown 0.500231212335068 0.50023164392134 0 8.63172544329771e-07 hm5C_site_55174 DeepMRMD:0;iRNA_m5C:8.63172544329771e-07 55175 chr19 16632025 16632025 1 + C A rs116677014 16632021 + 16632001 16632041 41 CTCATGGGTGGACAGGCCTGCAGCCCAGCACAGGAAGGAGG CTCATGGGTGGACAGGCCTGCAGCACAGCACAGGAAGGAGG < 41bp 0.501723498645304 0.800524694137406 0.20412385 0.1720753 prediction 0.597602390984204 Functional Gain - C19orf44 ENSG00000105072 UTR3 Human protein_coding chr19:16632021 chr19:16632025 . . 0 25 hm5C_associated_SNPs_102030 0 0 0 0 0 Cytosol 0.500231643922385 0.50023164399064 0 1.3650947039423e-10 hm5C_site_55175 DeepMRMD:0;iRNA_m5C:1.3650947039423e-10 55176 chr12 6639115 6639115 1 + T G rs61731147 6639113 + 6639093 6639133 41 AGCTGCGACGTGGGGCCAAGCCTGAGGGCAAGGTGAGCAGC AGCTGCGACGTGGGGCCAAGCCGGAGGGCAAGGTGAGCAGC < 41bp 0.472440262174463 0.798727461728417 0.41396227 0.89215386 prediction 0.597454923456834 Functional Gain - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6639113 chr12:6639115 synonymous SNV . 0 23 hm5C_associated_SNPs_102031 0 0 1 0 1 Nucleus 0.500231643921103 0.500231644401814 0.78430772 9.61421386946881e-10 hm5C_site_55176 DeepMRMD:0.78430772;iRNA_m5C:9.61421386946881e-10 55177 chr19 49842111 49842111 1 + T A UCEC 49842107 + 49842087 49842127 41 TAGATAAGGTGATCTTGCCCCAGCTCAGCAGGCTTGGACAC TAGATAAGGTGATCTTGCCCCAGCACAGCAGGCTTGGACAC < 41bp 0.516655037959315 0.815349311721661 0.18979362 0.23981276 prediction 0.597388547524692 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49842107 chr19:49842111 nonsynonymous SNV 0.046 1 25 hm5C_associated_SNPs_102032 0 0 1 1 1 Endoplasmic reticulum 0.500231643921093 0.500231643921137 0 8.81517081552374e-14 hm5C_site_55177 DeepMRMD:0;iRNA_m5C:8.81517081552374e-14 55178 chr1 156830742 156830742 1 + C A rs201472270 156830738 + 156830718 156830758 41 GCCGCCGCGATGCTGCGAGGCGGACGGCGCGGGCAGCTTGG GCCGCCGCGATGCTGCGAGGCGGAAGGCGCGGGCAGCTTGG < 41bp 0.555296191172643 0.853981036570638 0.9014019 0.91413975 prediction 0.597369690795991 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156830738 chr1:156830742 synonymous SNV . 0 25 hm5C_associated_SNPs_102033 0 0 1 0 0 chromatin 0.500231643976988 0.500231643921092 0.0254757000000001 0 hm5C_site_55178 DeepMRMD:0.0254757000000001;iRNA_m5C:0 55179 chr9 135374785 135374785 1 + C A COAD 135374781 + 135374761 135374801 41 ATCGGACGCTGGAACGTGTTCAAGCAGCAGCCCACCTGCCC ATCGGACGCTGGAACGTGTTCAAGAAGCAGCCCACCTGCCC < 41bp 0.599307427909373 0.897991336102724 0.49217755 0.8586691 prediction 0.597367816386702 Functional Gain - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135374781 chr9:135374785 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_102034 0 0 0 0 1 nucleus 0.500231643945354 0.500231665850318 0.7173382 4.38099276856008e-08 hm5C_site_55179 DeepMRMD:0.7173382;iRNA_m5C:4.38099276856008e-08 55180 chr20 9510367 9510367 1 + T A OV 9510363 + 9510343 9510383 41 TTTTGGGGCTCATCTTGGGCCTCGTCATCATGGTAACACTC TTTTGGGGCTCATCTTGGGCCTCGACATCATGGTAACACTC < 41bp 0.487812288856804 0.798673212494445 0.011319101 0.0730623 prediction 0.59734642498889 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9510363 chr20:9510367 nonsynonymous SNV 0.506 3 25 hm5C_associated_SNPs_102035 0 0 0 0 1 exosome 0.500231643921029 0.500231643920431 0 0 hm5C_site_55180 DeepMRMD:0;iRNA_m5C:0 55181 chr5 140559109 140559109 1 + C A LUSC 140559105 + 140559085 140559125 41 GCTGCTGCCGCCCCAGGATCCGCACCTGCCCCTCGCCTCCC GCTGCTGCCGCCCCAGGATCCGCAACTGCCCCTCGCCTCCC < 41bp 0.597377019930811 0.895997946946747 0.106542975 0.2668756 prediction 0.597241854031871 Functional Gain - PCDHB8 ENSG00000120322 CDS Human protein_coding chr5:140559105 chr5:140559109 nonsynonymous SNV 0.159 0 25 hm5C_associated_SNPs_102036 0 0 0 0 0 exosome 0.500231643928514 0.500231643921092 0 0 hm5C_site_55181 DeepMRMD:0;iRNA_m5C:0 55182 chr3 169540122 169540122 1 + T G UCEC 169540120 + 169540100 169540140 41 AAGGAAATTCCCGTCGTCATCTTTAAAAACCTCCACCATCT AAGGAAATTCCCGTCGTCATCTGTAAAAACCTCCACCATCT < 41bp 0.529183698554772 0.827795099557599 0.06074524 0.07588631 prediction 0.597222802005654 Functional Gain - LRRIQ4 ENSG00000188306 CDS Human protein_coding chr3:169540120 chr3:169540122 nonsynonymous SNV 0.008 0 23 hm5C_associated_SNPs_102037 0 0 0 0 0 exosome 0.500231643921092 0.500231643922288 0 2.39164243964751e-12 hm5C_site_55182 DeepMRMD:0;iRNA_m5C:2.39164243964751e-12 55183 chr14 74531621 74531621 1 + C A KIRC 74531617 + 74531597 74531637 41 CACTGGAATGGGGACATTCACTCCCACCTAAAACAGAACAA CACTGGAATGGGGACATTCACTCCAACCTAAAACAGAACAA < 41bp 0.604648418889771 0.903224574766144 0.2847025 0.91241944 prediction 0.597152311752747 Functional Gain - ALDH6A1 ENSG00000119711 CDS Human protein_coding chr14:74531617 chr14:74531621 synonymous SNV . 0 25 hm5C_associated_SNPs_102038 0 0 0 1 0 Endoplasmic reticulum 0.500231643649823 0.500231643305927 0.82483888 0 hm5C_site_55183 DeepMRMD:0.82483888;iRNA_m5C:0 55184 chr21 45994251 45994251 1 + C A GBM 45994247 + 45994227 45994267 41 TCAGGCTGCATCAGCTCCTGCACGCCCTCGTGCTGCCAGCA TCAGGCTGCATCAGCTCCTGCACGACCTCGTGCTGCCAGCA < 41bp 0.438906055283896 0.798574930581925 0.084310055 0.066218436 prediction 0.59714986116385 Functional Gain - KRTAP10-4 ENSG00000215454 CDS Human protein_coding chr21:45994247 chr21:45994251 nonsynonymous SNV 0.073 1 25 hm5C_associated_SNPs_102039 0 0 0 0 0 unknown 0.500229978902895 0.500231643657177 0 3.32950856418712e-06 hm5C_site_55184 DeepMRMD:0;iRNA_m5C:3.32950856418712e-06 55185 chr10 116620618 116620618 1 + C A GBM 116620614 + 116620594 116620634 41 TCCTTACGTGAACCTCGCTCCTGGCTGTAGATCTCTCTTCT TCCTTACGTGAACCTCGCTCCTGGATGTAGATCTCTCTTCT < 41bp 0.398072104410322 0.79852624919705 0.2209523 0.4646536 prediction 0.597052498394101 Functional Gain - FAM160B1 ENSG00000151553 CDS Human protein_coding chr10:116620614 chr10:116620618 synonymous SNV . 0 25 hm5C_associated_SNPs_102040 0 0 1 0 0 nucleoplasm 0.500231643921093 0.500231643921775 0 1.36357591884462e-12 hm5C_site_55185 DeepMRMD:0;iRNA_m5C:1.36357591884462e-12 55186 chrX 55117036 55117036 1 + T A UCEC 55117032 + 55117012 55117052 41 GATTGAAAATCAAGCAGTGCCTGCTTTTCAAGGTGAAGGGA GATTGAAAATCAAGCAGTGCCTGCATTTCAAGGTGAAGGGA < 41bp 0.505932960576516 0.8044584678583 0.010766268 0.03423041 prediction 0.597051014563569 Functional Gain - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55117032 chrX:55117036 synonymous SNV . 0 25 hm5C_associated_SNPs_102041 0 0 0 0 1 Cytosol 0.500231650610843 0.500231631933416 0 0 hm5C_site_55186 DeepMRMD:0;iRNA_m5C:0 55187 chr11 48238825 48238825 1 + T G LUAD 48238822 + 48238802 48238842 41 GCTGGGGGGCTTTTGTCACTCCATAATTCAGATTCTCGTTA GCTGGGGGGCTTTTGTCACTCCAGAATTCAGATTCTCGTTA < 41bp 0.57875734874302 0.877280433035272 0.0849655 0.24028921 prediction 0.597046168584504 Functional Gain - OR4B1 ENSG00000175619 CDS Human protein_coding chr11:48238822 chr11:48238825 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_102042 0 0 0 0 0 unknown 0.500231643921096 0.500231643778131 0 0 hm5C_site_55187 DeepMRMD:0;iRNA_m5C:0 55188 chr5 169535205 169535205 1 + C A rs377539902 169535201 + 169535181 169535221 41 GAGAGCAGTCTCCCGGTGGACAGCCCCAAGACCACGGAGCC GAGAGCAGTCTCCCGGTGGACAGCACCAAGACCACGGAGCC < 41bp 0.401431379722678 0.798510338686851 0.27858752 0.16151899 prediction 0.597020677373701 Functional Gain - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169535201 chr5:169535205 nonsynonymous SNV 0.243 4 25 hm5C_associated_SNPs_102043 0 0 0 0 0 exosome 0.500231643921093 0.500231643921095 0 4.44089209850063e-15 hm5C_site_55188 DeepMRMD:0;iRNA_m5C:4.44089209850063e-15 55189 chr11 130319275 130319275 1 + T G LUAD 130319273 + 130319253 130319293 41 TACCGAGGCGCCGAGTATGTCATTAGCCCGCTGCCCAATGC TACCGAGGCGCCGAGTATGTCAGTAGCCCGCTGCCCAATGC < 41bp 0.559207560644145 0.857715470627047 0.32141933 0.80403274 prediction 0.597015819965804 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130319273 chr11:130319275 nonsynonymous SNV 0.929 3 23 hm5C_associated_SNPs_102044 0 0 0 0 0 exosome 0.500229625851437 0.500231643921341 0.60806548 4.03613980903827e-06 hm5C_site_55189 DeepMRMD:0.60806548;iRNA_m5C:4.03613980903827e-06 55190 chr15 72638562 72638562 1 + C G rs201497629 72638561 + 72638541 72638581 41 GCCCAACCCTCCACCTCCCCCCCGAAAACCCTTACCAGAGC GCCCAACCCTCCACCTCCCCCGCGAAAACCCTTACCAGAGC < 41bp 0.49719422148211 0.798500468398431 0.06170836 0.35730252 prediction 0.597000936796862 Functional Gain - HEXA ENSG00000261460 ncRNA_exonic Human antisense chr15:72638561 chr15:72638562 . . 0 22 hm5C_associated_SNPs_102045 1 0 0 0 0 Endoplasmic reticulum 0.500231642792533 0.500231643921092 0 2.25711982437815e-09 hm5C_site_55190 DeepMRMD:0;iRNA_m5C:2.25711982437815e-09 Tay-Sachs disease Tay-Sachs disease 55191 chr6 90604824 90604824 1 + C A UCEC 90604820 + 90604800 90604840 41 CCCACTGAGAAGACAATTTTCATGCTTTTTATGCACAGCAT CCCACTGAGAAGACAATTTTCATGATTTTTATGCACAGCAT < 41bp 0.420215731937661 0.798498082121217 0.86293685 0.8789346 prediction 0.596996164242434 Functional Gain - GJA10 ENSG00000135355 CDS Human protein_coding chr6:90604820 chr6:90604824 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_102046 0 0 0 0 0 unknown 0.500232179345027 0.500233558666384 0.0319955000000001 2.75864271470638e-06 hm5C_site_55191 DeepMRMD:0.0319955000000001;iRNA_m5C:2.75864271470638e-06 55192 chr1 147380457 147380457 1 + C A LUSC 147380453 + 147380433 147380473 41 GGCGGGGACTAACGGCGGCCCGGACCAGGGCAGCGTCAAGA GGCGGGGACTAACGGCGGCCCGGAACAGGGCAGCGTCAAGA < 41bp 0.595456661945845 0.893932433608094 0.3967787 0.6309123 prediction 0.596951543324499 Functional Gain - GJA8 ENSG00000121634 CDS Human protein_coding chr1:147380453 chr1:147380457 nonsynonymous SNV 0.132 1 25 hm5C_associated_SNPs_102047 0 0 0 0 0 unknown 0.500231643921095 0.500231643921092 0.2618246 0 hm5C_site_55192 DeepMRMD:0.2618246;iRNA_m5C:0 55193 chr11 809955 809955 1 + C A rs182816891 809951 + 809931 809971 41 GTAGCGGTTTAACCCCGCCTCTTGCGTCGGCGCCTTCCTTT GTAGCGGTTTAACCCCGCCTCTTGAGTCGGCGCCTTCCTTT < 41bp 0.562191439668122 0.860662874699816 0.048511088 0.058230907 prediction 0.596942870063387 Functional Gain - RPLP2 ENSG00000177600 UTR5 Human protein_coding chr11:809951 chr11:809955 . . 0 25 hm5C_associated_SNPs_102048 0 0 1 0 1 Ribosome 0.500231643925112 0.500231643921041 0 0 hm5C_site_55193 DeepMRMD:0;iRNA_m5C:0 55194 chr20 61299190 61299190 1 + C A LUAD 61299186 + 61299166 61299206 41 CTACAGCCCTGTGTGCGGCTCGGACGGCCTCATGTACTTCT CTACAGCCCTGTGTGCGGCTCGGAAGGCCTCATGTACTTCT < 41bp 0.406571740956262 0.798450875046761 0.37755045 0.45366722 prediction 0.596901750093522 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61299186 chr20:61299190 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_102049 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.50023164391696 0 0 hm5C_site_55194 DeepMRMD:0;iRNA_m5C:0 55195 chr5 14713083 14713083 1 + C A LGG 14713079 + 14713059 14713099 41 ACGCCCAGGGTCGCACCGTGCACCCTGCAGATGAGAACACA ACGCCCAGGGTCGCACCGTGCACCATGCAGATGAGAACACA < 41bp 0.409594543990324 0.798420020537241 0.057922304 0.06359264 prediction 0.596840041074483 Functional Gain - LOC100130744;ANKH ENSG00000154122 splicing Human protein_coding chr5:14713079 chr5:14713083 . 0.060 0 25 hm5C_associated_SNPs_102050 0 0 0 0 0 unknown 0.500231625930485 0.500231667289326 0 8.27176822593145e-08 hm5C_site_55195 DeepMRMD:0;iRNA_m5C:8.27176822593145e-08 55196 chr16 335112 335112 1 + T G CESC 335109 + 335089 335129 41 TGAGGGGCGGGCAGACTTCCCCGTGGACGAGGAGCTTGGCC TGAGGGGCGGGCAGACTTCCCCGGGGACGAGGAGCTTGGCC < 41bp 0.401315052114243 0.798401922490697 0.83368814 0.93357986 prediction 0.596803844981393 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335109 chr16:335112 nonsynonymous SNV 0.891 0 24 hm5C_associated_SNPs_102051 0 0 1 0 2 nucleolus 0.500231643847534 0.500231643921155 0.19978344 1.47243328640911e-10 hm5C_site_55196 DeepMRMD:0.19978344;iRNA_m5C:1.47243328640911e-10 Blood protein levels 55197 chr17 37791876 37791876 1 + C A PRAD 37791872 + 37791852 37791892 41 ATCCCCAGCTGGGCAAAAGACAACCTGTGGCCAGGGTCTGG ATCCCCAGCTGGGCAAAAGACAACATGTGGCCAGGGTCTGG < 41bp 0.396119730444166 0.798396768664667 0.13863376 0.10303873 prediction 0.596793537329334 Functional Gain - PPP1R1B ENSG00000131771 CDS Human protein_coding chr17:37791872 chr17:37791876 synonymous SNV . 0 25 hm5C_associated_SNPs_102052 0 0 0 0 1 Ribosome 0.500231641689082 0.500231643921091 0 4.46401848819278e-09 hm5C_site_55197 DeepMRMD:0;iRNA_m5C:4.46401848819278e-09 55198 chr21 31768627 31768627 1 + C A LUAD 31768623 + 31768603 31768643 41 CAGACATCCTATGTGGAGTCCAGCCCCTGCCAGACCTCCTG CAGACATCCTATGTGGAGTCCAGCACCTGCCAGACCTCCTG < 41bp 0.581683383985686 0.880076638519631 0.07400057 0.14866692 prediction 0.59678650906789 Functional Gain - KRTAP13-1 ENSG00000198390 CDS Human protein_coding chr21:31768623 chr21:31768627 nonsynonymous SNV 0.327 3 25 hm5C_associated_SNPs_102053 0 0 0 0 0 unknown 0.500231643633808 0.50023164390378 0 5.39944533528569e-10 hm5C_site_55198 DeepMRMD:0;iRNA_m5C:5.39944533528569e-10 55199 chr4 159136374 159136374 1 + C A LIHC 159136370 + 159136350 159136390 41 TCTCCAGTGGGTTCTTTGTGCTGCCATATGGTTGGTTGCCT TCTCCAGTGGGTTCTTTGTGCTGCAATATGGTTGGTTGCCT < 41bp 0.401182496112913 0.798388058478028 0.073691726 0.14536676 prediction 0.596776116956056 Functional Gain - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159136370 chr4:159136374 synonymous SNV . 0 25 hm5C_associated_SNPs_102054 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_55199 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 55200 chrX 51486999 51486999 1 + T G UCEC 51486997 + 51486977 51487017 41 CTCCGGCAGCAACGATGAAACCTGCACCGGCGCGGGATACC CTCCGGCAGCAACGATGAAACCGGCACCGGCGCGGGATACC < 41bp 0.463557305049898 0.798325888178981 0.38858953 0.57915664 prediction 0.596651776357962 Functional Gain - GSPT2 ENSG00000189369 CDS Human protein_coding chrX:51486997 chrX:51486999 nonsynonymous SNV 0.693 0 23 hm5C_associated_SNPs_102055 0 0 0 0 0 Cytosol 0.500231643921005 0.500231643920552 0.15831328 0 hm5C_site_55200 DeepMRMD:0.15831328;iRNA_m5C:0 55201 chr11 71671877 71671877 1 + C A UCEC 71671873 + 71671853 71671893 41 AATGGTCCTCATCCTCATCGCAACCTTGGTGGTGGCCCAGC AATGGTCCTCATCCTCATCGCAACATTGGTGGTGGCCCAGC < 41bp 0.528638177645187 0.826954144634223 0.055705905 0.103746444 prediction 0.596631933978071 Functional Gain - RNF121 ENSG00000137522 CDS Human protein_coding chr11:71671873 chr11:71671877 synonymous SNV . 0 25 hm5C_associated_SNPs_102056 0 0 1 0 1 Nucleus 0.500231644801991 0.500231643921092 0 0 hm5C_site_55201 DeepMRMD:0;iRNA_m5C:0 55202 chr19 36205554 36205554 1 + C A UCEC 36205550 + 36205530 36205570 41 TGTCCCTGCCCCCCATAAGACTGCCCAGCCCCTATGGCTCT TGTCCCTGCCCCCCATAAGACTGCACAGCCCCTATGGCTCT < 41bp 0.382272110233823 0.798295333109281 0.17371541 0.107070506 prediction 0.596590666218562 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205550 chr19:36205554 nonsynonymous SNV 0.924 0 25 hm5C_associated_SNPs_102057 0 0 0 0 0 nucleus 0.500231643925049 0.500231643921101 0 0 hm5C_site_55202 DeepMRMD:0;iRNA_m5C:0 55203 chr17 39394313 39394313 1 + T G BLCA 39394310 + 39394290 39394330 41 CTACCCCTGACACCATGACCCACTGTTGTTCCCCTTGCTGT CTACCCCTGACACCATGACCCACGGTTGTTCCCCTTGCTGT < 41bp 0.580170274548912 0.878445466914787 0.08757377 0.30509496 prediction 0.59655038473175 Functional Gain - KRTAP9-8 ENSG00000187272 CDS Human protein_coding chr17:39394310 chr17:39394313 nonsynonymous SNV 0.006 3 24 hm5C_associated_SNPs_102058 0 0 0 0 0 unknown 0.500231643918415 0.500231643850436 0 0 hm5C_site_55203 DeepMRMD:0;iRNA_m5C:0 55204 chr20 2616614 2616614 1 + C G LUSC 2616613 + 2616593 2616633 41 CTCAGTTTCCAAAAGCCTTTCCCGAGCTAATGCCCAGCTGA CTCAGTTTCCAAAAGCCTTTCGCGAGCTAATGCCCAGCTGA < 41bp 0.504565832220442 0.802833261408801 0.31353733 0.39315683 prediction 0.596534858376717 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2616613 chr20:2616614 synonymous SNV . 0 22 hm5C_associated_SNPs_102059 0 0 0 0 2 exosome 0.500231643902418 0.500236010020287 0 8.73223573893966e-06 hm5C_site_55204 DeepMRMD:0;iRNA_m5C:8.73223573893966e-06 55205 chr19 4290602 4290602 1 + T A LUSC 4290598 + 4290578 4290618 41 AGGGTGCCGAGCATCTGGCTCTGCTGTACCCCGTGGTCACG AGGGTGCCGAGCATCTGGCTCTGCAGTACCCCGTGGTCACG < 41bp 0.515435458940766 0.813656386247219 0.041020423 0.09196451 prediction 0.596441854612906 Functional Gain - SHD ENSG00000105251 CDS Human protein_coding chr19:4290598 chr19:4290602 nonsynonymous SNV 0.235 1 25 hm5C_associated_SNPs_102060 0 0 0 0 0 exosome 0.500231535444674 0.500230456869565 0 0 hm5C_site_55205 DeepMRMD:0;iRNA_m5C:0 55206 chr7 97833423 97833423 1 + C A THCA 97833419 + 97833399 97833439 41 TGGCCGCACTCGGCGCCTTACTCCCGGTTCTCCATCTCTCC TGGCCGCACTCGGCGCCTTACTCCAGGTTCTCCATCTCTCC < 41bp 0.372636794190051 0.798201052197137 0.48338252 0.95862824 prediction 0.596402104394275 Functional Gain - LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833419 chr7:97833423 synonymous SNV . 0 25 hm5C_associated_SNPs_102061 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921093 0.91725648 2.22044604925031e-16 hm5C_site_55206 DeepMRMD:0.91725648;iRNA_m5C:2.22044604925031e-16 55207 chr1 177249786 177249786 1 + C G HNSC 177249785 + 177249765 177249805 41 GTGCTGGCCCAGGGGCTGTGCCGGCCAGAGGTGGCCGAGTC GTGCTGGCCCAGGGGCTGTGCGGGCCAGAGGTGGCCGAGTC < 41bp 0.497909094494472 0.79819169744895 0.7667426 0.8786344 prediction 0.5963833948979 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177249785 chr1:177249786 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_102062 0 0 0 0 0 Nucleus 0.500231644034514 0.500231643925887 0.2237836 0 hm5C_site_55207 DeepMRMD:0.2237836;iRNA_m5C:0 55208 chr11 67076937 67076937 1 + T G BLCA 67076934 + 67076914 67076954 41 CCTGAGCGCTTCACCTACCACAATGTGCGCCTCTGGGATGA CCTGAGCGCTTCACCTACCACAAGGTGCGCCTCTGGGATGA < 41bp 0.404205957019281 0.798182136514318 0.23593661 0.89784527 prediction 0.596364273028636 Functional Gain - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67076934 chr11:67076937 nonsynonymous SNV 0.986 3 24 hm5C_associated_SNPs_102063 0 0 1 0 1 nucleus 0.500231653768673 0.500231643931027 0.79569054 0 hm5C_site_55208 DeepMRMD:0.79569054;iRNA_m5C:0 55209 chr1 114524237 114524237 1 + C A rs144472671 114524233 + 114524213 114524253 41 CCTTTGATGCCAGCGGCACCCTGACCCCTGAACGGGCAGCA CCTTTGATGCCAGCGGCACCCTGAACCCTGAACGGGCAGCA < 41bp 0.608021454149831 0.906182890552961 0.13078293 0.16577592 prediction 0.596322872806259 Functional Gain - OLFML3 ENSG00000116774 CDS Human protein_coding chr1:114524233 chr1:114524237 nonsynonymous SNV 0.377 1 25 hm5C_associated_SNPs_102064 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55209 DeepMRMD:0;iRNA_m5C:0 55210 chr9 71650766 71650766 1 + C A rs572324212 71650762 + 71650742 71650782 41 CACCCAGCCCAGCCCAGGCCCAGACCCTCACCCGGGTCCCG CACCCAGCCCAGCCCAGGCCCAGAACCTCACCCGGGTCCCG < 41bp 0.444366232201738 0.798159529143294 0.5300782 0.55934364 prediction 0.596319058286588 Functional Gain - FXN ENSG00000165060 CDS Human protein_coding chr9:71650762 chr9:71650766 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_102065 0 0 1 0 1 Cytosol 0.500231648076469 0.500255591230184 0.05853088 4.78863074302449e-05 hm5C_site_55210 DeepMRMD:0.05853088;iRNA_m5C:4.78863074302449e-05 55211 chr6 26413521 26413521 1 + T G UCEC 26413519 + 26413499 26413539 41 ACCCTGAGAGATTTAATTGGCATTATTGTGTTCTCGGCTGT ACCCTGAGAGATTTAATTGGCAGTATTGTGTTCTCGGCTGT < 41bp 0.499694952378578 0.798143138728285 0.26661295 0.32660103 prediction 0.596286277456571 Functional Gain - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26413519 chr6:26413521 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_102066 0 0 1 1 0 Nucleus 0.500231643921093 0.500231643921092 0 0 hm5C_site_55211 DeepMRMD:0;iRNA_m5C:0 55212 chr19 52954653 52954653 1 + T G rs558854457 52954650 + 52954630 52954670 41 AGAGGGCCGAGGCCACGGGACTCTCAGGGCCGGGCCCGCCC AGAGGGCCGAGGCCACGGGACTCGCAGGGCCGGGCCCGCCC < 41bp 0.57243963312755 0.870578518454895 0.051297814 0.13214841 prediction 0.596277770654691 Functional Gain - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52954650 chr19:52954653 nonsynonymous SNV 0.004 1 24 hm5C_associated_SNPs_102067 0 0 0 0 0 exosome 0.500231647607647 0.500231643716177 0 0 hm5C_site_55212 DeepMRMD:0;iRNA_m5C:0 55213 chr11 60890401 60890401 1 + C A UCEC 60890397 + 60890377 60890417 41 AGGCCAGGATCCAAACCCCGCAGGCCTGGCCGCAGGCACGG AGGCCAGGATCCAAACCCCGCAGGACTGGCCGCAGGCACGG < 41bp 0.592813106603808 0.890914689521616 0.3893209 0.44605613 prediction 0.596203165835616 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60890397 chr11:60890401 synonymous SNV . 0 25 hm5C_associated_SNPs_102068 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55213 DeepMRMD:0;iRNA_m5C:0 55214 chr7 44842037 44842037 1 + C A rs539726282 44842033 + 44842013 44842053 41 GCTGAGATTACAGATGTGAGCCACCGCACCCTACCTCATTT GCTGAGATTACAGATGTGAGCCACAGCACCCTACCTCATTT < 41bp 0.452196736315074 0.798072997653765 0.03353402 0.03185138 prediction 0.59614599530753 Functional Gain - PPIA ENSG00000196262 UTR3 Human protein_coding chr7:44842033 chr7:44842037 . . 0 25 hm5C_associated_SNPs_102069 0 0 1 9 0 Ribosome 0.500232230250264 0.500231641443822 0 0 hm5C_site_55214 DeepMRMD:0;iRNA_m5C:0 55215 chr20 19673941 19673941 1 + C A LAML 19673937 + 19673917 19673957 41 ACAGTGAAATGGGCGTTCACCTGGCCGCTGAGTTTCGTCTT ACAGTGAAATGGGCGTTCACCTGGACGCTGAGTTTCGTCTT < 41bp 0.42403994424993 0.798069640320103 0.7627154 0.5737443 prediction 0.596139280640206 Functional Gain - SLC24A3 ENSG00000185052 CDS Human protein_coding chr20:19673937 chr20:19673941 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_102070 0 0 0 0 1 exosome 0.50023164772744 0.500292165623992 0 0.00012103579310363 hm5C_site_55215 DeepMRMD:0;iRNA_m5C:0.00012103579310363 55216 chr1 201301531 201301531 1 + C A rs77409791 201301527 + 201301507 201301547 41 CCTCTCAGGCCAGCTCAGGTCACCCGGGCCTCTGACCCAGG CCTCTCAGGCCAGCTCAGGTCACCAGGGCCTCTGACCCAGG < 41bp 0.532037140699333 0.830076849411457 0.2741701 0.556927 prediction 0.596079417424248 Functional Gain - PKP1 ENSG00000081277 UTR3 Human protein_coding chr1:201301527 chr1:201301531 . . 0 25 hm5C_associated_SNPs_102071 0 0 0 0 0 exosome 0.500231643921081 0.500231643927213 0.113854 1.22637455746144e-11 hm5C_site_55216 DeepMRMD:0.113854;iRNA_m5C:1.22637455746144e-11 55217 chr9 35801946 35801946 1 + C A BLCA 35801942 + 35801922 35801962 41 GCGGGGATCCAGTTACGGCTCGCTCATGACAGCCCATGGGA GCGGGGATCCAGTTACGGCTCGCTAATGACAGCCCATGGGA < 41bp 0.38485115438989 0.798038871122917 0.015542537 0.040171653 prediction 0.596077742245833 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35801942 chr9:35801946 synonymous SNV . 0 25 hm5C_associated_SNPs_102072 0 0 0 0 2 chromatin 0.50023108564211 0.500231643921097 0 1.11655797452315e-06 hm5C_site_55217 DeepMRMD:0;iRNA_m5C:1.11655797452315e-06 55218 chr1 177247863 177247863 1 + C A LUSC 177247859 + 177247839 177247879 41 AAGACCCATCGGATCCTACGCCGGCTCTTCAACCTCTGCAA AAGACCCATCGGATCCTACGCCGGATCTTCAACCTCTGCAA < 41bp 0.401188084893761 0.798032321249498 0.37191218 0.5805522 prediction 0.596064642498997 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177247859 chr1:177247863 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_102073 0 0 0 0 0 Nucleus 0.500231643921085 0.500231643922537 0.1611044 2.90389934320956e-12 hm5C_site_55218 DeepMRMD:0.1611044;iRNA_m5C:2.90389934320956e-12 55219 chr16 66436744 66436744 1 + C A LUAD 66436740 + 66436720 66436760 41 GCGGCGGGGCCAAGCCCCCGCGGCCCGCGCTGGACGCCCGG GCGGCGGGGCCAAGCCCCCGCGGCACGCGCTGGACGCCCGG < 41bp 0.588979925905856 0.887009094751118 0.34268916 0.57942516 prediction 0.596058337690524 Functional Gain - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66436740 chr16:66436744 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_102074 0 0 0 0 0 Cytosol 0.50023165465237 0.500231644094052 0.15885032 0 hm5C_site_55219 DeepMRMD:0.15885032;iRNA_m5C:0 55220 chr9 131469190 131469190 1 + C A rs56251280 131469186 + 131469166 131469206 41 TTCCCACAGGGCCTGAGCTGCTGGCGGAGGAGCTACAGCAT TTCCCACAGGGCCTGAGCTGCTGGAGGAGGAGCTACAGCAT < 41bp 0.600823060289554 0.898811614368035 0.5987343 0.7133051 prediction 0.595977108156961 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131469186 chr9:131469190 nonsynonymous SNV 0.766 1 25 hm5C_associated_SNPs_102075 0 0 1 0 1 chromatin 0.500231802400299 0.500231643920619 0.2291416 0 hm5C_site_55220 DeepMRMD:0.2291416;iRNA_m5C:0 55221 chr17 74465363 74465363 1 + T A LIHC 74465359 + 74465339 74465379 41 GCTGGTTCGAGGAGGGCTGCCTTGTGGCCTTCATCATCGGC GCTGGTTCGAGGAGGGCTGCCTTGAGGCCTTCATCATCGGC < 41bp 0.514254311118969 0.812224556835144 0.048776656 0.09633112 prediction 0.59594049143235 Functional Gain - AANAT ENSG00000129673 CDS Human protein_coding chr17:74465359 chr17:74465363 nonsynonymous SNV 0.810 4 25 hm5C_associated_SNPs_102076 0 0 0 1 1 exosome 0.500231643920341 0.500231643920999 0 1.31494815036604e-12 hm5C_site_55221 DeepMRMD:0;iRNA_m5C:1.31494815036604e-12 55222 chr16 2018825 2018825 1 + C A COAD 2018821 + 2018801 2018841 41 AACTTCCTGGAGGAAGACACCGCTCTGCTGGAGGGTGCCCC AACTTCCTGGAGGAAGACACCGCTATGCTGGAGGGTGCCCC < 41bp 0.410144813676769 0.7979451654149 0.09641412 0.11557841 prediction 0.595890330829799 Functional Gain - RNF151 ENSG00000179580 CDS Human protein_coding chr16:2018821 chr16:2018825 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_102077 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_55222 DeepMRMD:0;iRNA_m5C:0 55223 chr19 30935757 30935757 1 + T A LUAD 30935753 + 30935733 30935773 41 GCCCACGCCAACCTGTACTCCAGGTACCTCTCCTGCCTGCA GCCCACGCCAACCTGTACTCCAGGAACCTCTCCTGCCTGCA < 41bp 0.524623564620296 0.822565184274066 0.7209209 0.72100043 prediction 0.59588323930754 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935753 chr19:30935757 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102078 0 0 1 0 0 exosome 0.500233159997756 0.500238452974546 0.0001590600000001 1.05859535795005e-05 hm5C_site_55223 DeepMRMD:0.0001590600000001;iRNA_m5C:1.05859535795005e-05 55224 chr19 15760910 15760910 1 + C G UCEC 15760909 + 15760889 15760929 41 CAGGAGCGGCGCCGCACCCTCCCTAGCCAGGGTGTTGATGA CAGGAGCGGCGCCGCACCCTCGCTAGCCAGGGTGTTGATGA < 41bp 0.49744396204093 0.797938084956129 0.0278517 0.056494236 prediction 0.595876169912257 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15760909 chr19:15760910 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_102079 0 0 1 0 1 exosome 0.500231643921091 0.500231643783951 0 0 hm5C_site_55224 DeepMRMD:0;iRNA_m5C:0 55225 chr13 113814337 113814337 1 + C A THCA 113814333 + 113814313 113814353 41 TTGTCTCGTCTGTAGTATTTCTCCCGGCCTCCAAAGCAAAC TTGTCTCGTCTGTAGTATTTCTCCAGGCCTCCAAAGCAAAC < 41bp 0.385370856079059 0.797924668377935 0.020022005 0.9116689 prediction 0.595849336755871 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113814333 chr13:113814337 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_102080 0 0 0 0 1 exosome 0.500231643920827 0.5002317513437 0.8233378 2.14845744972436e-07 hm5C_site_55225 DeepMRMD:0.8233378;iRNA_m5C:2.14845744972436e-07 55226 chr9 96793281 96793281 1 + C A rs543779652 96793277 + 96793257 96793297 41 GCCCTCGGGCCCGCTACCCACAGACCCTCCGCGGGGCAGCG GCCCTCGGGCCCGCTACCCACAGAACCTCCGCGGGGCAGCG < 41bp 0.515974011298893 0.8138885711377 0.8860018 0.91206974 prediction 0.595829119677615 Functional Gain - PTPDC1 ENSG00000158079 UTR5 Human protein_coding chr9:96793277 chr9:96793281 . . 0 25 hm5C_associated_SNPs_102081 0 0 1 0 0 Nucleus 0.500231637276934 0.500231643921092 0.05213588 1.32883166692466e-08 hm5C_site_55226 DeepMRMD:0.05213588;iRNA_m5C:1.32883166692466e-08 55227 chr12 109539760 109539760 1 + C A rs376918741 109539756 + 109539736 109539776 41 ATATCATGGACCTAATCAAGCTCACGGGCTCTGCTTTAGTG ATATCATGGACCTAATCAAGCTCAAGGGCTCTGCTTTAGTG < 41bp 0.378350015100461 0.797871634671965 0.022465885 0.040062547 prediction 0.595743269343929 Functional Gain - UNG ENSG00000076248 CDS Human protein_coding chr12:109539756 chr12:109539760 nonsynonymous SNV 0.856 4 25 hm5C_associated_SNPs_102082 0 0 1 0 2 Ribosome 0.500233281981245 0.500231648261167 0 0 hm5C_site_55227 DeepMRMD:0;iRNA_m5C:0 55228 chrX 100808329 100808329 1 + C A LIHC 100808325 + 100808305 100808345 41 CCATCTCTGGGAACAGGACCCTTGCACCGAGTTTACCCTGC CCATCTCTGGGAACAGGACCCTTGAACCGAGTTTACCCTGC < 41bp 0.602185247653471 0.900037107265352 0.09662771 0.21956596 prediction 0.595703719223763 Functional Gain - ARMCX1 ENSG00000126947 CDS Human protein_coding chrX:100808325 chrX:100808329 nonsynonymous SNV 0.759 0 25 hm5C_associated_SNPs_102083 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55228 DeepMRMD:0;iRNA_m5C:0 55229 chrX 49029582 49029582 1 + T G LUSC 49029580 + 49029560 49029600 41 GCTATTTTCTTTGTTGTCTACATGTGTGACCTGCACACCAA GCTATTTTCTTTGTTGTCTACAGGTGTGACCTGCACACCAA < 41bp 0.548338594773154 0.84618540529476 0.14874324 0.47209552 prediction 0.595693621043212 Functional Gain - PLP2 ENSG00000102007 CDS Human protein_coding chrX:49029580 chrX:49029582 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_102084 0 0 1 0 0 Ribosome 0.500231643921123 0.50023164393143 0 2.06139549874251e-11 hm5C_site_55229 DeepMRMD:0;iRNA_m5C:2.06139549874251e-11 55230 chr1 20681092 20681092 1 + C A rs926267 20681088 + 20681068 20681108 41 CGGGCTGACTGCTGCTGGGGCTGGCGAGGGAAGATGCAGTG CGGGCTGACTGCTGCTGGGGCTGGAGAGGGAAGATGCAGTG < 41bp 0.477445867130545 0.797841152531764 0.8361176 0.8311968 prediction 0.595682305063528 Functional Gain - VWA5B1 ENSG00000158816 UTR3 Human protein_coding chr1:20681088 chr1:20681092 . . 0 25 hm5C_associated_SNPs_102085 0 0 0 0 0 exosome 0.500231643920833 0.500231643921092 0 5.19584375524573e-13 hm5C_site_55230 DeepMRMD:0;iRNA_m5C:5.19584375524573e-13 55231 chrX 152774423 152774423 1 + C A rs11538656 152774419 + 152774399 152774439 41 TGCAAGTTCATGGCCTGTCCCTCCCAGACCCCTGCTCCACT TGCAAGTTCATGGCCTGTCCCTCCAAGACCCCTGCTCCACT < 41bp 0.401742312853181 0.797839193877862 0.22961932 0.9763637 prediction 0.595678387755724 Functional Gain - BGN ENSG00000182492 UTR3 Human protein_coding chrX:152774419 chrX:152774423 . . 0 25 hm5C_associated_SNPs_102086 0 0 0 0 0 Cytosol 0.500231645689707 0.50023164378714 0.9527274 0 hm5C_site_55231 DeepMRMD:0.9527274;iRNA_m5C:0 55232 chr9 90535334 90535334 1 + C A LUSC 90535330 + 90535310 90535350 41 CGTTAGCTTCCCCGGATCCTCGAACCAAGCATCCTCAGGAT CGTTAGCTTCCCCGGATCCTCGAAACAAGCATCCTCAGGAT < 41bp 0.445757866517184 0.797836092907965 0.47294384 0.9042908 prediction 0.59567218581593 Functional Gain - SPATA31C1 ENSG00000230246 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90535330 chr9:90535334 . . 0 25 hm5C_associated_SNPs_102087 0 0 0 0 0 unknown 0.500231644509787 0.500231643921093 0.8085816 0 hm5C_site_55232 DeepMRMD:0.8085816;iRNA_m5C:0 55233 chr12 47629097 47629097 1 + C A HNSC 47629093 + 47629073 47629113 41 ACCGTGAGGTCCGCGAGTTCCGCTCCGACCACCATCTGGTA ACCGTGAGGTCCGCGAGTTCCGCTACGACCACCATCTGGTA < 41bp 0.385801324669771 0.797788366870153 0.06091717 0.06236601 prediction 0.595576733740306 Functional Gain - PCED1B ENSG00000179715 CDS Human protein_coding chr12:47629093 chr12:47629097 nonsynonymous SNV 0.748 3 25 hm5C_associated_SNPs_102088 0 0 0 0 0 Nucleus 0.500231221229057 0.500231643920698 0 8.45383282266354e-07 hm5C_site_55233 DeepMRMD:0;iRNA_m5C:8.45383282266354e-07 55234 chr11 9595420 9595420 1 + C A rs570544453 9595416 + 9595396 9595436 41 GTGGCGGACCCGCCCCCAGGCCCGCAGTGTCCTGGACCCCG GTGGCGGACCCGCCCCCAGGCCCGAAGTGTCCTGGACCCCG < 41bp 0.472482445110339 0.79778721433865 0.1457026 0.14328346 prediction 0.5955744286773 Functional Gain - WEE1 ENSG00000166483 UTR5 Human protein_coding chr11:9595416 chr11:9595420 . . 0 25 hm5C_associated_SNPs_102089 0 0 1 0 0 Ribosome 0.500231721062798 0.500231586214423 0 0 hm5C_site_55234 DeepMRMD:0;iRNA_m5C:0 55235 chr17 7942824 7942824 1 + C A rs368311556 7942820 + 7942800 7942840 41 CTGGCCCCGGATGCCTGGTTCTGCCGCTGGTTCCAGCTGAC CTGGCCCCGGATGCCTGGTTCTGCAGCTGGTTCCAGCTGAC < 41bp 0.579947406813702 0.877705982193429 0.39045343 0.81806475 prediction 0.595517150759454 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7942820 chr17:7942824 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_102090 0 0 0 0 1 exosome 0.50023164387611 0.500231643921103 0.6361295 8.99875729487576e-11 hm5C_site_55235 DeepMRMD:0.6361295;iRNA_m5C:8.99875729487576e-11 55236 chr19 10225751 10225751 1 + C A rs537538801 10225747 + 10225727 10225767 41 GCGCTCTCGGAGGCTGTCTTCTGTCGCCAAGGGTCCCGGAC GCGCTCTCGGAGGCTGTCTTCTGTAGCCAAGGGTCCCGGAC < 41bp 0.45370608581828 0.797756834337692 0.37927407 0.4936123 prediction 0.595513668675383 Functional Gain - EIF3G;P2RY11;PPAN-P2RY11 ENSG00000130811;ENSG00000244165 UTR3 Human other chr19:10225747 chr19:10225751 . . 0 25 hm5C_associated_SNPs_102091 0 0 1 0 0 unknown 0.500231647828662 0.500231643725261 0 0 hm5C_site_55236 DeepMRMD:0;iRNA_m5C:0 55237 chr5 140573497 140573497 1 + C A LUSC 140573493 + 140573473 140573513 41 GCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAA GCCTTCACCCAAACCTCCTACACCATGTTCGTCCGCGAGAA < 41bp 0.395704393128751 0.797733016365665 0.03949973 0.064629436 prediction 0.59546603273133 Functional Gain - PCDHB10 ENSG00000120324 CDS Human protein_coding chr5:140573493 chr5:140573497 nonsynonymous SNV 0.958 0 25 hm5C_associated_SNPs_102092 0 0 0 0 0 exosome 0.500231642316136 0.500231643913654 0 3.19503601353688e-09 hm5C_site_55237 DeepMRMD:0;iRNA_m5C:3.19503601353688e-09 55238 chr19 1467210 1467210 1 + C A LUSC 1467206 + 1467186 1467226 41 CTGCTGCCCTCGGCCTGCCCCGAGCGCGGCGGGGGCGCCGG CTGCTGCCCTCGGCCTGCCCCGAGAGCGGCGGGGGCGCCGG < 41bp 0.45377440194586 0.79771963841508 0.48194072 0.85092473 prediction 0.595439276830161 Functional Gain - APC2 ENSG00000115266 CDS Human protein_coding chr19:1467206 chr19:1467210 nonsynonymous SNV 0.419 1 25 hm5C_associated_SNPs_102093 0 0 0 0 0 nucleolus 0.500231643921092 0.500231643921182 0.70184946 1.7963408538435e-13 hm5C_site_55238 DeepMRMD:0.70184946;iRNA_m5C:1.7963408538435e-13 55239 chr1 180885893 180885893 1 + C G rs12082445 180885892 + 180885872 180885912 41 CCCGATCCATGGAGTTACTCCCGGACGGCCTGGGGGTCCTG CCCGATCCATGGAGTTACTCCGGGACGGCCTGGGGGTCCTG < 41bp 0.504392150195026 0.802110715357888 0.41942185 0.8246658 prediction 0.595437130325724 Functional Gain - KIAA1614 ENSG00000135835 CDS Human protein_coding chr1:180885892 chr1:180885893 synonymous SNV . 0 22 hm5C_associated_SNPs_102094 0 0 0 0 0 nucleus 0.5002316439211 0.500231643921092 0.6493316 0 hm5C_site_55239 DeepMRMD:0.6493316;iRNA_m5C:0 55240 chr5 31317972 31317972 1 + C A UCEC 31317968 + 31317948 31317988 41 GCCATGCGGAGGCGCTCATCCACCCCACGGGACTGAGCACG GCCATGCGGAGGCGCTCATCCACCACACGGGACTGAGCACG < 41bp 0.381613856655283 0.797717516017729 0.08189055 0.045057684 prediction 0.595435032035457 Functional Gain - CDH6 ENSG00000113361 CDS Human protein_coding chr5:31317968 chr5:31317972 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_102095 0 0 0 0 1 exosome 0.500231643852584 0.500231643918822 0 1.32477362413397e-10 hm5C_site_55240 DeepMRMD:0;iRNA_m5C:1.32477362413397e-10 55241 chr4 5448455 5448455 1 + C A UCEC 5448451 + 5448431 5448471 41 AGGCCCCGGATACTCGTACCCTGTCGACTGGTGGTCCCTGG AGGCCCCGGATACTCGTACCCTGTAGACTGGTGGTCCCTGG < 41bp 0.413642350171066 0.797678840654036 0.17326936 0.15878797 prediction 0.595357681308072 Functional Gain - STK32B ENSG00000152953 CDS Human protein_coding chr4:5448451 chr4:5448455 synonymous SNV . 0 25 hm5C_associated_SNPs_102096 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_55241 DeepMRMD:0;iRNA_m5C:0 55242 chr7 119915129 119915129 1 + T A LUAD 119915125 + 119915105 119915145 41 GCAGGCGAGAGAACGCCGAGCGCCTGCAGGACGACGCGGAT GCAGGCGAGAGAACGCCGAGCGCCAGCAGGACGACGCGGAT < 41bp 0.499292065135202 0.797645836002187 0.52216154 0.54888654 prediction 0.595291672004374 Functional Gain - KCND2 ENSG00000184408 CDS Human protein_coding chr7:119915125 chr7:119915129 nonsynonymous SNV 0.393 3 25 hm5C_associated_SNPs_102097 0 0 0 0 0 exosome 0.500232361037839 0.500244913177246 0.05345 2.51042788146361e-05 hm5C_site_55242 DeepMRMD:0.05345;iRNA_m5C:2.51042788146361e-05 55243 chr12 50344823 50344823 1 + C A rs139893949 50344819 + 50344799 50344839 41 AAGCGGGGCCCACATCAACCCTGCCGTGACTGTGGCCTGCC AAGCGGGGCCCACATCAACCCTGCAGTGACTGTGGCCTGCC < 41bp 0.603139017009083 0.900772675576236 0.25948346 0.34574014 prediction 0.595267317134307 Functional Gain - AQP2 ENSG00000167580 CDS Human protein_coding chr12:50344819 chr12:50344823 synonymous SNV . 0 25 hm5C_associated_SNPs_102098 0 0 0 0 0 Ribosome 0.50023164392106 0.500231643877657 0 0 hm5C_site_55243 DeepMRMD:0;iRNA_m5C:0 55244 chr7 128097459 128097459 1 + T A UCEC 128097455 + 128097435 128097475 41 CCTCCTGGACCACCAGAAGCCAACTAGCCAACACAGAGCCC CCTCCTGGACCACCAGAAGCCAACAAGCCAACACAGAGCCC < 41bp 0.496628131332378 0.797619650100126 0.041499525 0.075054556 prediction 0.595239300200252 Functional Gain - HILPDA ENSG00000135245 CDS Human protein_coding chr7:128097455 chr7:128097459 nonsynonymous SNV 0.006 2 25 hm5C_associated_SNPs_102099 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921086 0 0 hm5C_site_55244 DeepMRMD:0;iRNA_m5C:0 55245 chr11 22397537 22397537 1 + T G HNSC 22397535 + 22397515 22397555 41 TTTGCTTCTGAAGGTTTTGGCATGGAAGCCACACTGCTCCT TTTGCTTCTGAAGGTTTTGGCAGGGAAGCCACACTGCTCCT < 41bp 0.550190405678043 0.847768340417171 0.53136814 0.905339 prediction 0.595155869478255 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22397535 chr11:22397537 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_102100 0 0 0 0 1 unknown 0.500231643921109 0.500231643921093 0.74794172 0 hm5C_site_55245 DeepMRMD:0.74794172;iRNA_m5C:0 55246 chr1 171227273 171227273 1 + C A LUAD 171227269 + 171227249 171227289 41 TGGGAGCTGGGGTCAGCGGCCTGGCCTCCATCAAGTGCTGT TGGGAGCTGGGGTCAGCGGCCTGGACTCCATCAAGTGCTGT < 41bp 0.59852329816109 0.896093067245175 0.2452564 0.17935336 prediction 0.595139538168171 Functional Gain - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171227269 chr1:171227273 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_102101 0 0 0 0 2 Cytosol 0.500231643863075 0.500231645767866 0 3.80958153911592e-09 hm5C_site_55246 DeepMRMD:0;iRNA_m5C:3.80958153911592e-09 55247 chr16 31234185 31234185 1 + C A LUAD 31234181 + 31234161 31234201 41 CTGGCAGAGTCTCCCCCACCCGCCCGTCTGGACATCCAGCT CTGGCAGAGTCTCCCCCACCCGCCAGTCTGGACATCCAGCT < 41bp 0.379676539439162 0.797531536955391 0.08157393 0.32243282 prediction 0.595063073910782 Functional Gain - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31234181 chr16:31234185 nonsynonymous SNV 0.229 1 25 hm5C_associated_SNPs_102102 0 0 1 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55247 DeepMRMD:0;iRNA_m5C:0 55248 chr1 110883833 110883833 1 + T A SKCM 110883829 + 110883809 110883849 41 AGAACGCAGCACTCGGACTGCAGCTACTTCTGTGCCTGCTT AGAACGCAGCACTCGGACTGCAGCAACTTCTGTGCCTGCTT < 41bp 0.494057486030215 0.797525661885516 0.40628362 0.3726309 prediction 0.595051323771032 Functional Gain - RBM15 ENSG00000162775 CDS Human protein_coding chr1:110883829 chr1:110883833 synonymous SNV . 0 25 hm5C_associated_SNPs_102103 0 0 1 0 0 Nucleus 0.500231708034264 0.500231662893891 0 0 hm5C_site_55248 DeepMRMD:0;iRNA_m5C:0 55249 chr11 66254137 66254137 1 + C A rs112484606 66254133 + 66254113 66254153 41 GAGCCAAGGCTTCGACACCTCGGACTGGGGAAGGAGGTGAG GAGCCAAGGCTTCGACACCTCGGAATGGGGAAGGAGGTGAG < 41bp 0.603471541134891 0.900989213410842 0.30315328 0.4997317 prediction 0.5950353445519 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66254133 chr11:66254137 nonsynonymous SNV 0.965 4 25 hm5C_associated_SNPs_102104 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_55249 DeepMRMD:0;iRNA_m5C:0 55250 chr9 129595397 129595397 1 + T G LUSC 129595395 + 129595375 129595415 41 CCAGCAACTCGTCCACAGAGCATGACCGCCTGAGCACGGAA CCAGCAACTCGTCCACAGAGCAGGACCGCCTGAGCACGGAA < 41bp 0.54771021008688 0.845216972358453 0.012079716 0.11392072 prediction 0.595013524543145 Functional Gain - ZBTB43 ENSG00000169155 CDS Human protein_coding chr9:129595395 chr9:129595397 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_102105 0 0 1 0 0 Cytosol 0.500231643918057 0.500231643923444 0 1.07747144539871e-11 hm5C_site_55250 DeepMRMD:0;iRNA_m5C:1.07747144539871e-11 55251 chr20 44439809 44439809 1 + C A LUSC 44439805 + 44439785 44439825 41 TACGGACAGAGAATGAGCATCGTGCTGTTGAAGCACCTCCA TACGGACAGAGAATGAGCATCGTGATGTTGAAGCACCTCCA < 41bp 0.41339661925051 0.797495800834922 0.29913384 0.34417492 prediction 0.594991601669844 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44439805 chr20:44439809 nonsynonymous SNV 0.971 1 25 hm5C_associated_SNPs_102106 0 0 1 0 0 cytosol 0.500231733620541 0.500235353772674 0 7.24030426479949e-06 hm5C_site_55251 DeepMRMD:0;iRNA_m5C:7.24030426479949e-06 55252 chr4 39482912 39482912 1 + C A STAD 39482908 + 39482888 39482928 41 TGGCGGGAAGTGGATTGTGTCTGGCTCGGAGGATAACCTTC TGGCGGGAAGTGGATTGTGTCTGGATCGGAGGATAACCTTC < 41bp 0.579025606414207 0.876519617763562 0.044747382 0.087112725 prediction 0.59498802269871 Functional Gain - LOC401127 ENSG00000224097 ncRNA_exonic Human transcribed_processed_pseudogene chr4:39482908 chr4:39482912 . . 0 25 hm5C_associated_SNPs_102107 0 0 0 2 0 unknown 0.50023164392109 0.500231643921253 0 3.27293747659496e-13 hm5C_site_55252 DeepMRMD:0;iRNA_m5C:3.27293747659496e-13 55253 chr7 142750168 142750168 1 + C A OV 142750164 + 142750144 142750184 41 TCTCCACTTGCGGGTCTCACCTCACACTGGTCTTCATCGGC TCTCCACTTGCGGGTCTCACCTCAAACTGGTCTTCATCGGC < 41bp 0.400144226243032 0.797491196118097 0.052388817 0.1542314 prediction 0.594982392236194 Functional Gain - OR6V1 ENSG00000225781 CDS Human protein_coding chr7:142750164 chr7:142750168 nonsynonymous SNV 0.956 3 25 hm5C_associated_SNPs_102108 0 0 0 0 0 unknown 0.500231643734576 0.500231643993971 0 5.18789233794337e-10 hm5C_site_55253 DeepMRMD:0;iRNA_m5C:5.18789233794337e-10 55254 chr16 28909683 28909683 1 + C A UCEC 28909679 + 28909659 28909699 41 GAGTGGGGCACTGGCCGGGACACCCTGCGCTGCTTGGCCCT GAGTGGGGCACTGGCCGGGACACCATGCGCTGCTTGGCCCT < 41bp 0.370222008458166 0.797487981930828 0.015479267 0.04347396 prediction 0.594975963861656 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28909679 chr16:28909683 nonsynonymous SNV 0.979 5 25 hm5C_associated_SNPs_102109 0 0 1 0 1 chromatin 0.50023164367328 0.500231643921054 0 4.95548491130648e-10 hm5C_site_55254 DeepMRMD:0;iRNA_m5C:4.95548491130648e-10 55255 chr16 30939906 30939906 1 + C A COAD 30939902 + 30939882 30939922 41 CCAGGGTTCTGAATCCGAGCCAGGCTTTCTCATCCTGCCAC CCAGGGTTCTGAATCCGAGCCAGGATTTCTCATCCTGCCAC < 41bp 0.595809746461545 0.893293599538106 0.36827368 0.6144875 prediction 0.594967706153122 Functional Gain - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30939902 chr16:30939906 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_102110 0 0 1 0 2 chromatin 0.500231643921092 0.500231643921092 0.228975 0 hm5C_site_55255 DeepMRMD:0.228975;iRNA_m5C:0 55256 chr17 66040510 66040510 1 + T A HNSC 66040506 + 66040486 66040526 41 CCAGTGGTGGAACAGTTGAACAGATTGTGTACCTTGTTCAC CCAGTGGTGGAACAGTTGAACAGAATGTGTACCTTGTTCAC < 41bp 0.498743685587141 0.797480976893209 0.60298383 0.83421755 prediction 0.594961953786418 Functional Gain - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66040506 chr17:66040510 nonsynonymous SNV 0.745 3 25 hm5C_associated_SNPs_102111 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921196 0.46246744 2.06501482580279e-13 hm5C_site_55256 DeepMRMD:0.46246744;iRNA_m5C:2.06501482580279e-13 55257 chr1 248551636 248551636 1 + T G rs954475 248551634 + 248551614 248551654 41 GAAGGCCTTTGCCACCTGCTCTTCACACATGATGGTGGTGA GAAGGCCTTTGCCACCTGCTCTGCACACATGATGGTGGTGA < 41bp 0.514646958086103 0.812096135847837 0.3504392 0.27854675 prediction 0.594898355523467 Functional Gain - OR2T6 ENSG00000198104 CDS Human protein_coding chr1:248551634 chr1:248551636 nonsynonymous SNV 0.003 3 23 hm5C_associated_SNPs_102112 0 0 0 0 0 unknown 0.500233386285751 0.500254301712158 0 4.18308528133959e-05 hm5C_site_55257 DeepMRMD:0;iRNA_m5C:4.18308528133959e-05 55258 chr22 50315316 50315316 1 + C A HNSC 50315312 + 50315292 50315332 41 AGCAGACAGGGCGACGGGTCCTGCCGGTGCCACATGGGGTA AGCAGACAGGGCGACGGGTCCTGCAGGTGCCACATGGGGTA < 41bp 0.60859740624211 0.906041458701645 0.41064698 0.656559 prediction 0.594888104919071 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50315312 chr22:50315316 synonymous SNV . 0 25 hm5C_associated_SNPs_102113 0 0 1 0 2 Ribosome 0.500231643921093 0.500231643921092 0.313118 0 hm5C_site_55258 DeepMRMD:0.313118;iRNA_m5C:0 55259 chr5 5306737 5306737 1 + C A HNSC 5306733 + 5306713 5306753 41 TGCTCACATTTGCCGAAGCCCAGCCTGGAGCTGGAACGTGC TGCTCACATTTGCCGAAGCCCAGCATGGAGCTGGAACGTGC < 41bp 0.394792975127617 0.79743734130375 0.0640409 0.06606135 prediction 0.5948746826075 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5306733 chr5:5306737 nonsynonymous SNV 0.615 0 25 hm5C_associated_SNPs_102114 0 0 0 0 0 exosome 0.500231640950364 0.500231643699934 0 5.49913958813875e-09 hm5C_site_55259 DeepMRMD:0;iRNA_m5C:5.49913958813875e-09 55260 chr16 28848322 28848322 1 + C A rs563669491 28848318 + 28848298 28848338 41 GCTCTGCCCCTGCCCGTCCCCACCCAGTCTTGCCCTCCCAT GCTCTGCCCCTGCCCGTCCCCACCAAGTCTTGCCCTCCCAT < 41bp 0.455600253704383 0.797431878112238 0.017962515 0.047844023 prediction 0.594863756224475 Functional Gain - ATXN2L ENSG00000260570 ncRNA_exonic Human antisense chr16:28848318 chr16:28848322 . . 0 25 hm5C_associated_SNPs_102115 0 0 1 1 0 Cytosol 0.500231643923009 0.500231643962648 0 7.92790277870381e-11 hm5C_site_55260 DeepMRMD:0;iRNA_m5C:7.92790277870381e-11 55261 chr1 15770006 15770006 1 + C G LUAD 15770005 + 15769985 15770025 41 CAGAGAAGGACTCCCTGCTCCCCAAGGACTACCCCTGCTAT CAGAGAAGGACTCCCTGCTCCGCAAGGACTACCCCTGCTAT < 41bp 0.49976716950412 0.797426967147599 0.22665587 0.24694756 prediction 0.594853934295198 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15770005 chr1:15770006 nonsynonymous SNV 0.628 3 22 hm5C_associated_SNPs_102116 0 0 0 0 2 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_55261 DeepMRMD:0;iRNA_m5C:0 55262 chr6 161528964 161528964 1 + T G LGG 161528962 + 161528942 161528982 41 TATGGGAAGGTGTACACCTGCATCAGCGTCGACACCGGGGA TATGGGAAGGTGTACACCTGCAGCAGCGTCGACACCGGGGA < 41bp 0.471493446016656 0.797414883728928 0.3974377 0.6090969 prediction 0.594829767457857 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161528962 chr6:161528964 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_102117 0 0 1 0 2 Cytosol 0.500231643734866 0.500231643922296 0.2181938 3.74860364971141e-10 hm5C_site_55262 DeepMRMD:0.2181938;iRNA_m5C:3.74860364971141e-10 55263 chr1 233802494 233802494 1 + T A ESCA 233802490 + 233802470 233802510 41 GCAGGCCGGTCCTCTACTTCCACATCCGCTGGGGCTTCTCC GCAGGCCGGTCCTCTACTTCCACAACCGCTGGGGCTTCTCC < 41bp 0.490735042759543 0.797403823830403 0.33015984 0.3755656 prediction 0.594807647660806 Functional Gain - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233802490 chr1:233802494 nonsynonymous SNV 0.976 0 25 hm5C_associated_SNPs_102118 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_55263 DeepMRMD:0;iRNA_m5C:0 55264 chr7 27138754 27138754 1 + T G rs706018 27138751 + 27138731 27138771 41 AGGAGCTGCGCAGCCCTGGCCGCTGCCGGGACGCCCTGCTC AGGAGCTGCGCAGCCCTGGCCGCGGCCGGGACGCCCTGCTC < 41bp 0.583295540737457 0.880676879525715 0.24092096 0.8790059 prediction 0.594762677576517 Functional Gain - HOTAIRM1 ENSG00000233429 ncRNA_exonic Human antisense chr7:27138751 chr7:27138754 . . 0 24 hm5C_associated_SNPs_102119 0 0 1 0 1 unknown 0.500231561438802 0.500231779331119 0.7580118 4.35784633934233e-07 hm5C_site_55264 DeepMRMD:0.7580118;iRNA_m5C:4.35784633934233e-07 55265 chr6 155577787 155577787 1 + C A UCEC 155577783 + 155577763 155577803 41 GCAGGACTCCAAGAGCACTTCTCCCGGGAAATACCCACACC GCAGGACTCCAAGAGCACTTCTCCAGGGAAATACCCACACC < 41bp 0.390228295080585 0.797367559789425 0.50383323 0.96572995 prediction 0.59473511957885 Functional Gain - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155577783 chr6:155577787 synonymous SNV . 0 25 hm5C_associated_SNPs_102120 0 0 0 0 0 Cytosol 0.50023164392109 0.500231643832339 0.92379344 0 hm5C_site_55265 DeepMRMD:0.92379344;iRNA_m5C:0 55266 chr17 37213333 37213333 1 + C A COAD 37213329 + 37213309 37213349 41 AAGGGAGGCTGGCGGATCTGCTACCTTTTGCGGTTCCCACC AAGGGAGGCTGGCGGATCTGCTACATTTTGCGGTTCCCACC < 41bp 0.408135437623884 0.797347295640492 0.41041222 0.2472265 prediction 0.594694591280984 Functional Gain - LOC100131347 ENSG00000263818 ncRNA_exonic Human transcribed_processed_pseudogene chr17:37213329 chr17:37213333 . . 0 25 hm5C_associated_SNPs_102121 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_55266 DeepMRMD:0;iRNA_m5C:0 55267 chr4 42403313 42403313 1 + C A UCEC 42403309 + 42403289 42403329 41 TTTGCCAGGGCTGAGCCGGGCTGCCTGGTGCCCTCACCGCC TTTGCCAGGGCTGAGCCGGGCTGCATGGTGCCCTCACCGCC < 41bp 0.596523727439588 0.893853634509445 0.60783947 0.44476795 prediction 0.594659814139715 Functional Gain - SHISA3 ENSG00000178343 CDS Human protein_coding chr4:42403309 chr4:42403313 nonsynonymous SNV 0.923 3 25 hm5C_associated_SNPs_102122 0 0 0 0 0 exosome 0.500231643921061 0.500231643909301 0 0 hm5C_site_55267 DeepMRMD:0;iRNA_m5C:0 55268 chr1 33547062 33547062 1 + C A rs547813967 33547058 + 33547038 33547078 41 GTTTCGAGGTCACCGGCGACCCCCCCTAGCAGCGCGCCTGG GTTTCGAGGTCACCGGCGACCCCCACTAGCAGCGCGCCTGG < 41bp 0.457444543158596 0.797316850970256 0.05459103 0.0909341 prediction 0.594633701940512 Functional Gain - AZIN2 ENSG00000142920 UTR5 Human protein_coding chr1:33547058 chr1:33547062 . . 0 25 hm5C_associated_SNPs_102123 0 0 0 0 3 Nucleus 0.500231643921092 0.500231643921042 0 0 hm5C_site_55268 DeepMRMD:0;iRNA_m5C:0 55269 chr16 85708430 85708430 1 + T G rs147367661 85708427 + 85708407 85708447 41 ATAGTTGGCTTCTCCCCTGTCAGTGGAAACCCCACTTCTGC ATAGTTGGCTTCTCCCCTGTCAGGGGAAACCCCACTTCTGC < 41bp 0.449981017829893 0.797308445584553 0.8266164 0.9450811 prediction 0.594616891169106 Functional Gain - GSE1 ENSG00000131149 UTR3 Human protein_coding chr16:85708427 chr16:85708430 . . 0 24 hm5C_associated_SNPs_102124 0 0 1 0 0 Cytosol 0.500231643921093 0.500231643921092 0.2369294 0 hm5C_site_55269 DeepMRMD:0.2369294;iRNA_m5C:0 55270 chr12 57486351 57486351 1 + T A SKCM 57486347 + 57486327 57486367 41 CGAGAGAGCACCTACTTGTCCTCCTTGAAGGGCTCCAGGTG CGAGAGAGCACCTACTTGTCCTCCATGAAGGGCTCCAGGTG < 41bp 0.457822749149614 0.797297375911384 0.0067346096 0.9126866 prediction 0.594594751822767 Functional Gain - NAB2 ENSG00000166886 CDS Human protein_coding chr12:57486347 chr12:57486351 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_102125 0 0 1 0 1 Cytosol 0.500231660716757 0.500231648271743 0.8253732 0 hm5C_site_55270 DeepMRMD:0.8253732;iRNA_m5C:0 55271 chr8 103573038 103573038 1 + T A SARC 103573034 + 103573014 103573054 41 AACCCCTGCAGCCCCTGCAACCCGTGCAGCCCATATGATCC AACCCCTGCAGCCCCTGCAACCCGAGCAGCCCATATGATCC < 41bp 0.514349561614574 0.811643156394087 0.15785766 0.28824514 prediction 0.594587189559027 Functional Gain - ODF1 ENSG00000155087 CDS Human protein_coding chr8:103573034 chr8:103573038 nonsynonymous SNV 0.323 2 25 hm5C_associated_SNPs_102126 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_55271 DeepMRMD:0;iRNA_m5C:0 55272 chr11 5411355 5411355 1 + C A SKCM 5411351 + 5411331 5411371 41 CACACAGTAGCAGGCCTGGCCTCCCAAGAGGAGCAGCGCCG CACACAGTAGCAGGCCTGGCCTCCAAAGAGGAGCAGCGCCG < 41bp 0.606241375379683 0.903533944587809 0.0743368 0.9734813 prediction 0.594585138416253 Functional Gain - OR51M1 ENSG00000184698 CDS Human protein_coding chr11:5411351 chr11:5411355 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_102127 0 0 0 0 0 nucleoplasm 0.500231643921033 0.500231643921141 0.9469626 2.15161222172355e-13 hm5C_site_55272 DeepMRMD:0.9469626;iRNA_m5C:2.15161222172355e-13 55273 chr5 131892688 131892688 1 + C A rs181051197 131892684 + 131892664 131892704 41 GGCCCACGTGATCCGCAGGGCGGCCGAGGCAGGAAGCTGTG GGCCCACGTGATCCGCAGGGCGGCAGAGGCAGGAAGCTGTG < 41bp 0.542829125750357 0.840112369578422 0.8194077 0.88343966 prediction 0.59456648765613 Functional Gain - RAD50 ENSG00000113522 UTR5 Human protein_coding chr5:131892684 chr5:131892688 . . 0 25 hm5C_associated_SNPs_102128 0 0 1 0 0 Cytosol 0.500231643921093 0.500232152050426 0.12806392 1.01625866721911e-06 hm5C_site_55273 DeepMRMD:0.12806392;iRNA_m5C:1.01625866721911e-06 55274 chr6 26509081 26509081 1 + C A LUAD 26509077 + 26509057 26509097 41 TCTCCCATTGGCAGGGCCCCCACGCCGGGTTGGGATTTTCC TCTCCCATTGGCAGGGCCCCCACGACGGGTTGGGATTTTCC < 41bp 0.410519338803508 0.797267701646577 0.21338293 0.3255598 prediction 0.594535403293154 Functional Gain - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26509077 chr6:26509081 synonymous SNV . 0 25 hm5C_associated_SNPs_102129 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643920976 0 0 hm5C_site_55274 DeepMRMD:0;iRNA_m5C:0 55275 chr18 21057190 21057190 1 + C A LGG 21057186 + 21057166 21057206 41 GTCAGTAGAACCTACCCACCCTCACGGCCTGGAGTTCTTGT GTCAGTAGAACCTACCCACCCTCAAGGCCTGGAGTTCTTGT < 41bp 0.372467136538989 0.797263914740203 0.013073742 0.03120637 prediction 0.594527829480406 Functional Gain - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21057186 chr18:21057190 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_102130 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55275 DeepMRMD:0;iRNA_m5C:0 55276 chr2 131520366 131520366 1 + C A LUSC 131520362 + 131520342 131520382 41 GCCCTGTGTGAGGACGTGGCCTCACTCCAGAGCTTCGACTC GCCCTGTGTGAGGACGTGGCCTCAATCCAGAGCTTCGACTC < 41bp 0.386898156117962 0.797263571917835 0.12658846 0.20113567 prediction 0.59452714383567 Functional Gain - AMER3 ENSG00000178171 CDS Human protein_coding chr2:131520362 chr2:131520366 nonsynonymous SNV 0.011 4 25 hm5C_associated_SNPs_102131 0 0 0 0 0 Nucleus 0.500232265763794 0.500231717913876 0 0 hm5C_site_55276 DeepMRMD:0;iRNA_m5C:0 55277 chr17 37360340 37360340 1 + C A UCEC 37360336 + 37360316 37360356 41 CGTGTACCCTGCAGGTATCACAGCCTGTACCTGAAGGTGAA CGTGTACCCTGCAGGTATCACAGCATGTACCTGAAGGTGAA < 41bp 0.392959839391268 0.797248593115293 0.3183733 0.28198513 prediction 0.594497186230585 Functional Gain - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360336 chr17:37360340 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_102132 0 0 1 0 1 chromatin 0.500231643921092 0.500231643927317 0 1.2448486685912e-11 hm5C_site_55277 DeepMRMD:0;iRNA_m5C:1.2448486685912e-11 55278 chr15 40660894 40660894 1 + C A rs145486974 40660890 + 40660870 40660910 41 CTGGGGCCTGACCTCTGCTGCGGCCACTCGGACTTCCCCTG CTGGGGCCTGACCTCTGCTGCGGCAACTCGGACTTCCCCTG < 41bp 0.411427107169875 0.797241814206801 0.86565864 0.9062296 prediction 0.594483628413603 Functional Gain - DISP2 ENSG00000140323 CDS Human protein_coding chr15:40660890 chr15:40660894 nonsynonymous SNV 0.727 0 25 hm5C_associated_SNPs_102133 0 0 1 0 0 nucleus 0.500231643921092 0.500231643921093 0.0811419199999999 6.66133814775094e-16 hm5C_site_55278 DeepMRMD:0.0811419199999999;iRNA_m5C:6.66133814775094e-16 55279 chr12 52473649 52473649 1 + C A rs77130816 52473645 + 52473625 52473665 41 AGTCGGCGTCGCCGCCGGAGCCCCCCGAGGGGCCGCGCGCG AGTCGGCGTCGCCGCCGGAGCCCCACGAGGGGCCGCGCGCG < 41bp 0.463201985414437 0.797195927437744 0.14790672 0.11716753 prediction 0.594391854875488 Functional Gain - OR7E47P ENSG00000257542 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr12:52473645 chr12:52473649 . . 0 25 hm5C_associated_SNPs_102134 0 0 0 0 0 unknown 0.500231643897975 0.500231643920363 0 4.47750725385276e-11 hm5C_site_55279 DeepMRMD:0;iRNA_m5C:4.47750725385276e-11 55280 chr9 135765048 135765048 1 + C A rs183858148 135765044 + 135765024 135765064 41 ACTCCTGACCTCAACTGGTCCACCCGCCTCGGCCTCCCAAA ACTCCTGACCTCAACTGGTCCACCAGCCTCGGCCTCCCAAA < 41bp 0.55061516706238 0.847791555118098 0.05884111 0.15119967 prediction 0.594352776111435 Functional Gain - SPACA9 ENSG00000165698 UTR3 Human protein_coding chr9:135765044 chr9:135765048 . . 0 25 hm5C_associated_SNPs_102135 0 0 0 0 0 exosome 0.500231643919586 0.500231643920936 0 2.69961830667853e-12 hm5C_site_55280 DeepMRMD:0;iRNA_m5C:2.69961830667853e-12 55281 chr10 47658597 47658597 1 + T G rs78983634 47658595 + 47658575 47658615 41 GAGCAGGAAGCCTTCGGTACCATGGACCTGACTGGAGAATA GAGCAGGAAGCCTTCGGTACCAGGGACCTGACTGGAGAATA < 41bp 0.544109233642101 0.841272594853968 0.3622934 0.91775954 prediction 0.594326722423735 Functional Gain - ANTXRL ENSG00000198250 CDS Human other chr10:47658595 chr10:47658597 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_102136 0 0 0 0 1 exosome 0.500231643921092 0.500231643928781 0.83551908 1.53768109356633e-11 hm5C_site_55281 DeepMRMD:0.83551908;iRNA_m5C:1.53768109356633e-11 Type II Diabetes Mellitus 55282 chr21 9825999 9825999 1 + C A rs538400500 9825995 + 9825975 9826015 41 CGTGGCGTCCCCTTCCCCGCCGGCCGCCTTTCTCGCGCCTT CGTGGCGTCCCCTTCCCCGCCGGCAGCCTTTCTCGCGCCTT < 41bp 0.507774040820419 0.804881516862865 0.47237697 0.7875572 prediction 0.594214952084891 Functional Gain - MIR3648-1;MIR3648-2 ENSG00000264462 ncRNA_exonic Human miRNA chr21:9825995 chr21:9825999 . . 0 25 hm5C_associated_SNPs_102137 0 0 1 0 0 unknown 0.500231643921092 0.500231643949163 0.5751144 5.61410917754301e-11 hm5C_site_55282 DeepMRMD:0.5751144;iRNA_m5C:5.61410917754301e-11 55283 chr2 217526674 217526674 1 + C A STAD 217526670 + 217526650 217526690 41 GGCCCTCTGGAGCACCTCTACTCCCTGCACATCCCCAACTG GGCCCTCTGGAGCACCTCTACTCCATGCACATCCCCAACTG < 41bp 0.614907520147868 0.91200965250467 0.23588035 0.9510912 prediction 0.594204264713603 Functional Gain - IGFBP2 ENSG00000115457 CDS Human protein_coding chr2:217526670 chr2:217526674 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_102138 0 0 1 2 2 Endoplasmic reticulum 0.500231643921092 0.500231643921093 0.9021824 1.11022302462516e-15 hm5C_site_55283 DeepMRMD:0.9021824;iRNA_m5C:1.11022302462516e-15 55284 chr15 25432690 25432690 1 + T G ESCA 25432687 + 25432667 25432707 41 GGGGGTGCCCTGGGTTGGGTCGATGATGAGAACCTTATATT GGGGGTGCCCTGGGTTGGGTCGAGGATGAGAACCTTATATT < 41bp 0.546362077687356 0.843450233853665 0.21195945 0.8837924 prediction 0.594176312332618 Functional Gain - SNORD115-10 ENSG00000201943 ncRNA_exonic Human snoRNA chr15:25432687 chr15:25432690 . . 0 24 hm5C_associated_SNPs_102139 0 0 1 0 0 unknown 0.500231633152289 0.500231602610864 0.7675848 0 hm5C_site_55284 DeepMRMD:0.7675848;iRNA_m5C:0 55285 chr1 109777943 109777943 1 + C A LUSC 109777939 + 109777919 109777959 41 CTGCACCGGGATGAGTGGCTCCGGCCGGAGGACCTGCCCAT CTGCACCGGGATGAGTGGCTCCGGACGGAGGACCTGCCCAT < 41bp 0.570120690552965 0.867204970697088 0.6096529 0.7316999 prediction 0.594168560288246 Functional Gain - SARS ENSG00000031698 CDS Human protein_coding chr1:109777939 chr1:109777943 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_102140 0 0 1 0 0 Ribosome 0.500231618404809 0.500231644596591 0.244094 5.2383564597136e-08 hm5C_site_55285 DeepMRMD:0.244094;iRNA_m5C:5.2383564597136e-08 55286 chr16 77756433 77756433 1 + C A rs114814225 77756429 + 77756409 77756449 41 CTGCTCTGCGCAAGCGCGACCGACCGAGCAGCTCCGAGGAG CTGCTCTGCGCAAGCGCGACCGACAGAGCAGCTCCGAGGAG < 41bp 0.551436194725737 0.848506567787889 0.0861792 0.15814665 prediction 0.594140746124304 Functional Gain - NUDT7 ENSG00000140876 UTR5 Human protein_coding chr16:77756429 chr16:77756433 . . 0 25 hm5C_associated_SNPs_102141 0 0 1 0 1 nucleoplasm 0.500231597011461 0.500231643895446 0 9.37679711654482e-08 hm5C_site_55286 DeepMRMD:0;iRNA_m5C:9.37679711654482e-08 55287 chr16 86589272 86589272 1 + C A rs75676498 86589268 + 86589248 86589288 41 AGGCAGATGGAAATTCGAGGCCAGCCCAGCCCCGGCGACTG AGGCAGATGGAAATTCGAGGCCAGACCAGCCCCGGCGACTG < 41bp 0.442015676176346 0.797052790713256 0.19525626 0.40743923 prediction 0.594105581426511 Functional Gain - FLJ30679 ENSG00000103248 upstream Human protein_coding chr16:86589268 chr16:86589272 . . 0 25 hm5C_associated_SNPs_102142 0 0 0 0 0 unknown 0.500231643952898 0.500231644033993 0 1.62191371444464e-10 hm5C_site_55287 DeepMRMD:0;iRNA_m5C:1.62191371444464e-10 55288 chr3 127325076 127325076 1 + C A OV 127325072 + 127325052 127325092 41 GCTGCAGATCTTTGATGAGGCTGCCCTGGAGGTGGTACTGG GCTGCAGATCTTTGATGAGGCTGCACTGGAGGTGGTACTGG < 41bp 0.384777492184169 0.797012631492394 0.24424446 0.242396 prediction 0.594025262984788 Functional Gain - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127325072 chr3:127325076 synonymous SNV . 0 25 hm5C_associated_SNPs_102143 0 0 1 0 0 Cytosol 0.500231640481063 0.500231644761914 0 8.56170290219893e-09 hm5C_site_55288 DeepMRMD:0;iRNA_m5C:8.56170290219893e-09 55289 chr8 123964335 123964335 1 + T A rs575404348 123964331 + 123964311 123964351 41 GAAGCCTGGAAAACCAAAAGCGGATGCCAAGAAGGTGCCCA GAAGCCTGGAAAACCAAAAGCGGAAGCCAAGAAGGTGCCCA < 41bp 0.497928789314175 0.796959331887975 0.31726503 0.2649259 prediction 0.593918663775951 Functional Gain - ZHX2 ENSG00000178764 CDS Human protein_coding chr8:123964331 chr8:123964335 nonsynonymous SNV 0.945 0 25 hm5C_associated_SNPs_102144 0 0 0 0 0 Nucleus 0.500231643786438 0.500231643921092 0 2.69308797484769e-10 hm5C_site_55289 DeepMRMD:0;iRNA_m5C:2.69308797484769e-10 55290 chr5 42801014 42801014 1 + T G UCEC 42801011 + 42800991 42801031 41 GATGGGAGGTTTTCTTTACACTGTCAGGTGATTGCAGACCC GATGGGAGGTTTTCTTTACACTGGCAGGTGATTGCAGACCC < 41bp 0.565358997623835 0.862298392543742 0.008116454 0.0198839 prediction 0.593878789839814 Functional Gain - SELENOP ENSG00000250722 CDS Human protein_coding chr5:42801011 chr5:42801014 unknown 1.000 0 24 hm5C_associated_SNPs_102145 0 0 0 1 0 unknown 0.500231606460492 0.500227221157258 0 0 hm5C_site_55290 DeepMRMD:0;iRNA_m5C:0 55291 chr1 197896792 197896792 1 + C A PRAD 197896788 + 197896768 197896808 41 TATCCACCCTCGCAGAAGACCAAGCGCATGCGAACCTCTTT TATCCACCCTCGCAGAAGACCAAGAGCATGCGAACCTCTTT < 41bp 0.410365244239557 0.796925977919054 0.4940767 0.44031164 prediction 0.593851955838108 Functional Gain - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197896788 chr1:197896792 nonsynonymous SNV 0.950 5 25 hm5C_associated_SNPs_102146 0 0 0 0 0 exosome 0.500231644573815 0.500231643921103 0 0 hm5C_site_55291 DeepMRMD:0;iRNA_m5C:0 55292 chr17 38346903 38346903 1 + C G rs368873031 38346902 + 38346882 38346922 41 CTGCCACCAGGTGCCCCTCCCCGAGGAGATCCAGGTCTCCC CTGCCACCAGGTGCCCCTCCCGGAGGAGATCCAGGTCTCCC < 41bp 0.481212750762007 0.796925459516739 0.88246334 0.9382217 prediction 0.593850919033478 Functional Gain - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38346902 chr17:38346903 synonymous SNV . 0 22 hm5C_associated_SNPs_102147 0 0 1 0 1 chromatin 0.500231643921169 0.500231643921093 0.11151672 0 hm5C_site_55292 DeepMRMD:0.11151672;iRNA_m5C:0 55293 chr1 1404151 1404151 1 + T G rs189706153 1404149 + 1404129 1404169 41 TTTAACCACAGAGGGGTGGGCTTCACAGGAGGTGGCTGCCA TTTAACCACAGAGGGGTGGGCTGCACAGGAGGTGGCTGCCA < 41bp 0.533393799585595 0.830308274141798 0.88464427 0.87847626 prediction 0.593828949112407 Functional Gain - ATAD3C ENSG00000215915 UTR3 Human protein_coding chr1:1404149 chr1:1404151 . . 0 23 hm5C_associated_SNPs_102148 0 0 1 0 0 Nucleus 0.500231643921093 0.500231643921093 0 6.66133814775094e-16 hm5C_site_55293 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 55294 chr19 15198666 15198666 1 + T A rs144766527 15198662 + 15198642 15198682 41 TTTGCTGTGTACTTACAGCCCACATCCCCCAGCTCCTCCCA TTTGCTGTGTACTTACAGCCCACAACCCCCAGCTCCTCCCA < 41bp 0.504504624799104 0.801418518113585 0.0025697947 0.0042665303 prediction 0.593827786628961 Functional Gain - OR1I1 ENSG00000094661 CDS Human protein_coding chr19:15198662 chr19:15198666 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_102149 0 0 0 0 0 unknown 0.50023164330176 0.500231643898524 0 1.1935281651887e-09 hm5C_site_55294 DeepMRMD:0;iRNA_m5C:1.1935281651887e-09 55295 chr2 238726978 238726978 1 + T G SKCM 238726975 + 238726955 238726995 41 AATCAGACAGTGGACGTTAGCACTGATTTTAGGGCTTGTTT AATCAGACAGTGGACGTTAGCACGGATTTTAGGGCTTGTTT < 41bp 0.584973817100147 0.881872975973847 0.34874064 0.8954469 prediction 0.5937983177474 Functional Gain - RBM44 ENSG00000177483 CDS Human protein_coding chr2:238726975 chr2:238726978 synonymous SNV . 0 24 hm5C_associated_SNPs_102150 0 0 0 0 0 exosome 0.500231643921111 0.500231643924726 0.7908938 7.22866211333439e-12 hm5C_site_55295 DeepMRMD:0.7908938;iRNA_m5C:7.22866211333439e-12 55296 chr11 5510803 5510803 1 + T A STAD 5510799 + 5510779 5510819 41 TAATCTCTATGTGCTGGTGCCTCCTGTACTCAATCCTATTC TAATCTCTATGTGCTGGTGCCTCCAGTACTCAATCCTATTC < 41bp 0.486441390563619 0.796878895233217 0.094116956 0.9525386 prediction 0.593757790466435 Functional Gain - OR52D1 ENSG00000181609 CDS Human protein_coding chr11:5510799 chr11:5510803 synonymous SNV . 0 25 hm5C_associated_SNPs_102151 0 0 0 0 0 chromatin 0.500231643395418 0.500231650186598 0.9050772 1.35823599034524e-08 hm5C_site_55296 DeepMRMD:0.9050772;iRNA_m5C:1.35823599034524e-08 55297 chr1 248263502 248263502 1 + C A UCEC 248263498 + 248263478 248263518 41 AGCTGAAGACAAGATCCTGGCAGTCTTCTACACCATCCTTA AGCTGAAGACAAGATCCTGGCAGTATTCTACACCATCCTTA < 41bp 0.422973859353063 0.796867020390304 0.2104542 0.20872077 prediction 0.593734040780607 Functional Gain - OR2L13 ENSG00000196071 CDS Human protein_coding chr1:248263498 chr1:248263502 synonymous SNV . 0 25 hm5C_associated_SNPs_102152 0 0 0 0 0 Nucleus 0.500231643931437 0.500231646983563 0 6.10425154867755e-09 hm5C_site_55297 DeepMRMD:0;iRNA_m5C:6.10425154867755e-09 55298 chr5 85915186 85915186 1 + T G SKCM 85915183 + 85915163 85915203 41 CCAACAGAATTTGCCATTTTCAGTGGAAAACAAGTGGTCGT CCAACAGAATTTGCCATTTTCAGGGGAAAACAAGTGGTCGT < 41bp 0.577455395213829 0.874321083149582 0.40248713 0.9447777 prediction 0.593731375871506 Functional Gain - COX7C ENSG00000127184 CDS Human protein_coding chr5:85915183 chr5:85915186 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_102153 0 0 1 0 1 Ribosome 0.500231662471951 0.500231643921063 0.8895554 0 hm5C_site_55298 DeepMRMD:0.8895554;iRNA_m5C:0 55299 chr1 155156517 155156517 1 + C A SKCM 155156513 + 155156493 155156533 41 TCCTTCCTGGATGCTGTTTCCTTCCGTGGGCTCTTGGAGTG TCCTTCCTGGATGCTGTTTCCTTCAGTGGGCTCTTGGAGTG < 41bp 0.414674460597408 0.796835170665899 0.26238653 0.3164624 prediction 0.593670341331799 Functional Gain - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155156513 chr1:155156517 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_102154 0 0 1 0 0 nucleolus 0.500231643921092 0.500231643916987 0 0 hm5C_site_55299 DeepMRMD:0;iRNA_m5C:0 55300 chr5 1201862 1201862 1 + C A LUAD 1201858 + 1201838 1201878 41 GAGCAGGAGGAGGCCAGCTCCCGGCCGAAGTGGGACAACAA GAGCAGGAGGAGGCCAGCTCCCGGACGAAGTGGGACAACAA < 41bp 0.420481222046083 0.796831276701335 0.7098897 0.86314964 prediction 0.593662553402669 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1201858 chr5:1201862 nonsynonymous SNV 0.812 4 25 hm5C_associated_SNPs_102155 0 0 0 0 0 cytosol 0.500231643922915 0.500231643921457 0.30651988 0 hm5C_site_55300 DeepMRMD:0.30651988;iRNA_m5C:0 55301 chr1 173839515 173839515 1 + C A OV 173839511 + 173839491 173839531 41 TTCGGGCTCACAAAGTGGTGCTGGCTGCCAGCTCCCCCTAT TTCGGGCTCACAAAGTGGTGCTGGATGCCAGCTCCCCCTAT < 41bp 0.396610249850239 0.796830822394026 0.5378308 0.82733977 prediction 0.593661644788052 Functional Gain - ZBTB37 ENSG00000185278 CDS Human protein_coding chr1:173839511 chr1:173839515 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102156 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.57901794 2.22044604925031e-16 hm5C_site_55301 DeepMRMD:0.57901794;iRNA_m5C:2.22044604925031e-16 55302 chr5 145719487 145719487 1 + C A LUAD 145719483 + 145719463 145719503 41 CCATGGGCATGAGTCACCCGCACACCGTGGCCCCTCATAGC CCATGGGCATGAGTCACCCGCACAACGTGGCCCCTCATAGC < 41bp 0.399420700697236 0.796818860748778 0.11682978 0.16685957 prediction 0.593637721497555 Functional Gain - POU4F3 ENSG00000091010 CDS Human protein_coding chr5:145719483 chr5:145719487 nonsynonymous SNV 0.871 1 25 hm5C_associated_SNPs_102157 0 0 0 0 0 exosome 0.500250781921529 0.500231644223895 0 0 hm5C_site_55302 DeepMRMD:0;iRNA_m5C:0 55303 chr11 120180221 120180221 1 + C A HNSC 120180217 + 120180197 120180237 41 GTGGTGAGGGTCTGGTTCTGCAACCGACGCCAAAAGGAGAA GTGGTGAGGGTCTGGTTCTGCAACAGACGCCAAAAGGAGAA < 41bp 0.38886417958756 0.796810990518074 0.24306723 0.31139058 prediction 0.593621981036148 Functional Gain - POU2F3 ENSG00000137709 CDS Human protein_coding chr11:120180217 chr11:120180221 synonymous SNV . 0 25 hm5C_associated_SNPs_102158 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921093 0 8.88178419700125e-16 hm5C_site_55303 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 55304 chr11 55432928 55432928 1 + C A LUSC 55432924 + 55432904 55432944 41 ACTACCATCTCTCTCAAAGGCTGCCTCACCCAGCTGTTTGT ACTACCATCTCTCTCAAAGGCTGCATCACCCAGCTGTTTGT < 41bp 0.593266239033964 0.890067751060977 0.015610963 0.011806756 prediction 0.593603024054024 Functional Gain - OR4C6 ENSG00000181903 CDS Human protein_coding chr11:55432924 chr11:55432928 nonsynonymous SNV 0.285 0 25 hm5C_associated_SNPs_102159 0 0 0 0 0 unknown 0.500231643921142 0.500231643921088 0 0 hm5C_site_55304 DeepMRMD:0;iRNA_m5C:0 55305 chr1 15978294 15978294 1 + C G rs139539436 15978293 + 15978273 15978313 41 GGAGAGCTACCAGAGTGTGCCCGGTTGGCATATGGGGCTGG GGAGAGCTACCAGAGTGTGCCGGGTTGGCATATGGGGCTGG < 41bp 0.503002165371464 0.79977385688827 0.0786899 0.8791991 prediction 0.59354338303361 Functional Gain - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15978293 chr1:15978294 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_102160 0 0 1 0 1 Ribosome 0.500236377555133 0.500231644620801 0.7583982 0 hm5C_site_55305 DeepMRMD:0.7583982;iRNA_m5C:0 55306 chr7 133932357 133932357 1 + T A rs34904752 133932353 + 133932333 133932373 41 ACGAGGCAGCCCGGCAAGCTCTAATGGGAAGGATACGCCCT ACGAGGCAGCCCGGCAAGCTCTAAAGGGAAGGATACGCCCT < 41bp 0.542550161675594 0.839320904168188 0.09010959 0.11441693 prediction 0.593541484985188 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133932353 chr7:133932357 nonsynonymous SNV 0.537 0 25 hm5C_associated_SNPs_102161 0 0 0 0 2 cytosol 0.500231643921093 0.500231643921092 0 0 hm5C_site_55306 DeepMRMD:0;iRNA_m5C:0 55307 chr6 52268150 52268150 1 + C A STAD 52268146 + 52268126 52268166 41 GAAACGGATGTGCCCCAGCTCTTCCGGGAGCCTTACATCCG GAAACGGATGTGCCCCAGCTCTTCAGGGAGCCTTACATCCG < 41bp 0.398326352900908 0.796761371708847 0.16717479 0.33634824 prediction 0.593522743417693 Functional Gain - PAQR8 ENSG00000170915 CDS Human protein_coding chr6:52268146 chr6:52268150 synonymous SNV . 0 25 hm5C_associated_SNPs_102162 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55307 DeepMRMD:0;iRNA_m5C:0 55308 chr16 21696591 21696591 1 + C A LUSC 21696587 + 21696567 21696607 41 ACCTGGAGCAGCGTCTGCACCAGCCCCAGAAGCTGCTGGAG ACCTGGAGCAGCGTCTGCACCAGCACCAGAAGCTGCTGGAG < 41bp 0.388296266860214 0.796755304022065 0.21610749 0.24964911 prediction 0.593510608044131 Functional Gain - OTOA ENSG00000155719 CDS Human protein_coding chr16:21696587 chr16:21696591 nonsynonymous SNV 0.732 4 25 hm5C_associated_SNPs_102163 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55308 DeepMRMD:0;iRNA_m5C:0 55309 chr19 33795402 33795402 1 + C A rs143479458 33795398 + 33795378 33795418 41 CTGCCCAGAGATCGGGAACTCTGCCCCGTAGGACTGGAAGA CTGCCCAGAGATCGGGAACTCTGCACCGTAGGACTGGAAGA < 41bp 0.422734039047465 0.796742593467094 0.33391306 0.3652737 prediction 0.593485186934188 Functional Gain - CEBPA-AS1 ENSG00000178863;ENSG00000267296 ncRNA_exonic Human other chr19:33795398 chr19:33795402 . . 0 25 hm5C_associated_SNPs_102164 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_55309 DeepMRMD:0;iRNA_m5C:0 55310 chr2 132163927 132163927 1 + C A rs532043733 132163923 + 132163903 132163943 41 CATCTCAGCTGCTTCCAGTTCAGGCAATTACGAATACAGCT CATCTCAGCTGCTTCCAGTTCAGGAAATTACGAATACAGCT < 41bp 0.559832996749291 0.856563077427693 0.8057014 0.8599342 prediction 0.593460161356802 Functional Gain - LINC01120 ENSG00000223631 ncRNA_intronic Human lincRNA chr2:132163923 chr2:132163927 . . 0 25 hm5C_associated_SNPs_102165 0 0 0 5 0 unknown 0.500231695758868 0.500231635349848 0.1084656 0 hm5C_site_55310 DeepMRMD:0.1084656;iRNA_m5C:0 55311 chr19 56652664 56652664 1 + C A rs565633422 56652660 + 56652640 56652680 41 GCCTGCTGGGGCATGGAGTCCCGGCGAGCTTTGTGCGCATG GCCTGCTGGGGCATGGAGTCCCGGAGAGCTTTGTGCGCATG < 41bp 0.542109176578531 0.838831982675942 0.3805255 0.5073905 prediction 0.593445612194823 Functional Gain - ZNF444 ENSG00000167685 UTR5 Human protein_coding chr19:56652660 chr19:56652664 . . 0 25 hm5C_associated_SNPs_102166 0 0 0 0 1 Cytosol 0.500231644003763 0.50023164391627 0.0147809999999999 0 hm5C_site_55311 DeepMRMD:0.0147809999999999;iRNA_m5C:0 55312 chr12 109523613 109523613 1 + C G rs61760225 109523612 + 109523592 109523632 41 CAATCAGTGGCTGTGGGTCTCCGATGACACTGTCCGCAAGG CAATCAGTGGCTGTGGGTCTCGGATGACACTGTCCGCAAGG < 41bp 0.504976951406983 0.801689382953624 0.30642438 0.9022324 prediction 0.593424863093283 Functional Gain - USP30 ENSG00000135093 CDS Human protein_coding chr12:109523612 chr12:109523613 synonymous SNV . 0 22 hm5C_associated_SNPs_102167 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.8044648 6.66133814775094e-16 hm5C_site_55312 DeepMRMD:0.8044648;iRNA_m5C:6.66133814775094e-16 55313 chr1 152636671 152636671 1 + C G rs28576017 152636670 + 152636650 152636690 41 ATGTCCACCTAAGTGTCCCCCCAAATGCCCACCACAGTGCC ATGTCCACCTAAGTGTCCCCCGAAATGCCCACCACAGTGCC < 41bp 0.503387373117881 0.800095294271039 0.5218757 0.29338074 prediction 0.593415842306315 Functional Gain - LCE2D ENSG00000187223 CDS Human protein_coding chr1:152636670 chr1:152636671 synonymous SNV . 0 22 hm5C_associated_SNPs_102168 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_55313 DeepMRMD:0;iRNA_m5C:0 55314 chr19 1082844 1082844 1 + C G rs115553053 1082843 + 1082823 1082863 41 CCTTGACTCTGCGCAGCTTCCCGAGCCGCTCATCTCCTTCC CCTTGACTCTGCGCAGCTTCCGGAGCCGCTCATCTCCTTCC < 41bp 0.515261906169303 0.811968521995488 0.89462197 0.9393705 prediction 0.59341323165237 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1082843 chr19:1082844 synonymous SNV . 0 22 hm5C_associated_SNPs_102169 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0.08949706 0 hm5C_site_55314 DeepMRMD:0.08949706;iRNA_m5C:0 55315 chr2 8822431 8822431 1 + C A LUAD 8822427 + 8822407 8822447 41 AACATGAACGACTGCTACTCCAAGCTCAAGGAGCTGGTGCC AACATGAACGACTGCTACTCCAAGATCAAGGAGCTGGTGCC < 41bp 0.59164460455689 0.888345703211214 0.0801737 0.07506037 prediction 0.593402197308648 Functional Gain - ID2 ENSG00000115738 CDS Human protein_coding chr2:8822427 chr2:8822431 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_102170 0 0 1 0 0 Endoplasmic reticulum 0.50023164388842 0.500231643921092 0 6.53457288279924e-11 hm5C_site_55315 DeepMRMD:0;iRNA_m5C:6.53457288279924e-11 55316 chr9 429816 429816 1 + C A rs536373496 429812 + 429792 429832 41 ACCCGGAGCCAAGCCTGTGCCACCCTTTACCTCCTCATGAG ACCCGGAGCCAAGCCTGTGCCACCATTTACCTCCTCATGAG < 41bp 0.397674568185323 0.796696177522949 0.015170336 0.05918631 prediction 0.593392355045898 Functional Gain - DOCK8 ENSG00000107099 CDS Human protein_coding chr9:429812 chr9:429816 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_102171 0 0 1 0 0 Cytosol 0.500231644188576 0.500231643920927 0 0 hm5C_site_55316 DeepMRMD:0;iRNA_m5C:0 55317 chr9 136320455 136320455 1 + C A COAD 136320451 + 136320431 136320471 41 ATCCAGCGCCGGCGTGACACCTGCCTCGGACCCCAGGCCCA ATCCAGCGCCGGCGTGACACCTGCATCGGACCCCAGGCCCA < 41bp 0.600362427885927 0.897054578565999 0.23572156 0.33288938 prediction 0.593384301360144 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136320451 chr9:136320455 nonsynonymous SNV 0.063 0 25 hm5C_associated_SNPs_102172 0 0 1 0 1 nucleus 0.500185434489946 0.500232004162247 0 9.31393446013118e-05 hm5C_site_55317 DeepMRMD:0;iRNA_m5C:9.31393446013118e-05 55318 chr8 39873026 39873026 1 + T G UCEC 39873024 + 39873004 39873044 41 TCTCCCAGGGCCTCCTCAGGCTTTAAAAGACAGGGGCACAG TCTCCCAGGGCCTCCTCAGGCTGTAAAAGACAGGGGCACAG < 41bp 0.473444237745192 0.796690090374006 0.09161088 0.12084702 prediction 0.593380180748012 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39873024 chr8:39873026 nonsynonymous SNV 0.045 2 23 hm5C_associated_SNPs_102173 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55318 DeepMRMD:0;iRNA_m5C:0 55319 chr1 1269515 1269515 1 + T G STAD 1269512 + 1269492 1269532 41 CCAATGCCACGCTGGCCTTTCTCTGCTTCCTGGGCACTTTC CCAATGCCACGCTGGCCTTTCTCGGCTTCCTGGGCACTTTC < 41bp 0.421040119096463 0.796678334167558 0.31219852 0.50512236 prediction 0.593356668335116 Functional Gain - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1269512 chr1:1269515 nonsynonymous SNV 0.861 2 24 hm5C_associated_SNPs_102174 0 0 0 0 0 chromatin 0.500231644249036 0.500231643921026 0.01024472 0 hm5C_site_55319 DeepMRMD:0.01024472;iRNA_m5C:0 55320 chr4 57796923 57796923 1 + C A CESC 57796919 + 57796899 57796939 41 CGTTCAGGTGGAGCCGCCACCTCCCATGGAGCATGCTCAGA CGTTCAGGTGGAGCCGCCACCTCCAATGGAGCATGCTCAGA < 41bp 0.457394317615776 0.796676787825264 0.10229415 0.97062004 prediction 0.593353575650528 Functional Gain - REST ENSG00000084093 CDS Human protein_coding chr4:57796919 chr4:57796923 synonymous SNV . 0 25 hm5C_associated_SNPs_102175 0 0 1 0 0 Ribosome 0.500231643921091 0.50023163756351 0.94124008 0 hm5C_site_55320 DeepMRMD:0.94124008;iRNA_m5C:0 55321 chr17 73267518 73267518 1 + C A rs3826327 73267514 + 73267494 73267534 41 GCGCCTGGGCCGTGTCCGGGCCCACGCCGGACCCGCCGGCA GCGCCTGGGCCGTGTCCGGGCCCAAGCCGGACCCGCCGGCA < 41bp 0.4494915425631 0.796668429296407 0.24923354 0.5437735 prediction 0.593336858592813 Functional Gain - LOC100287042 ENSG00000263843 ncRNA_exonic Human antisense chr17:73267514 chr17:73267518 . . 0 25 hm5C_associated_SNPs_102176 0 0 1 0 0 unknown 0.500231643953725 0.500213131545834 0.087547 0 hm5C_site_55321 DeepMRMD:0.087547;iRNA_m5C:0 55322 chr20 16730619 16730619 1 + T G STAD 16730617 + 16730597 16730637 41 GGAACTTGGTCAAGGAACAGCGTGTGTACCAGGAAGCTACC GGAACTTGGTCAAGGAACAGCGGGTGTACCAGGAAGCTACC < 41bp 0.536371396574122 0.833026137626223 0.42325574 0.9114923 prediction 0.593309482104202 Functional Gain - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730617 chr20:16730619 synonymous SNV . 0 23 hm5C_associated_SNPs_102177 0 0 0 1 2 unknown 0.50023164391531 0.50023097610334 0.8229846 0 hm5C_site_55322 DeepMRMD:0.8229846;iRNA_m5C:0 55323 chr2 139308582 139308582 1 + T A ESCA 139308578 + 139308558 139308598 41 AGTGAAGTTCGAGCAAAATTCAAATTTTCCCTTCTGAATGC AGTGAAGTTCGAGCAAAATTCAAAATTTCCCTTCTGAATGC < 41bp 0.506655630619211 0.803305428278076 0.11743131 0.17256856 prediction 0.593299595317731 Functional Gain - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139308578 chr2:139308582 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102178 0 0 1 0 1 chromatin 0.500231698425908 0.500231643921103 0 0 hm5C_site_55323 DeepMRMD:0;iRNA_m5C:0 55324 chr12 123879801 123879801 1 + C A rs150318048 123879797 + 123879777 123879817 41 AAAAGCCCATCAAGGGCAAACAGGCCCCCCGAAAAAAGTAA AAAAGCCCATCAAGGGCAAACAGGACCCCCGAAAAAAGTAA < 41bp 0.39758387306345 0.796647204573435 0.15825126 0.030721575 prediction 0.59329440914687 Functional Gain - KMT5A ENSG00000183955 CDS Human protein_coding chr12:123879797 chr12:123879801 nonsynonymous SNV 0.364 1 25 hm5C_associated_SNPs_102179 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_55324 DeepMRMD:0;iRNA_m5C:0 55325 chr1 245319708 245319708 1 + T G COAD 245319705 + 245319685 245319725 41 TCCTGAGGGCGCGGGCTCAGCGCTCGGCTCCTCGGGGACCC TCCTGAGGGCGCGGGCTCAGCGCGCGGCTCCTCGGGGACCC < 41bp 0.468214269336571 0.796645501569904 0.3156256 0.7586497 prediction 0.593291003139807 Functional Gain - KIF26B ENSG00000162849 CDS Human protein_coding chr1:245319705 chr1:245319708 nonsynonymous SNV 0.971 1 24 hm5C_associated_SNPs_102180 0 0 0 0 0 insoluble cytoplasm 0.500231643921093 0.500231643921014 0.5172994 0 hm5C_site_55325 DeepMRMD:0.5172994;iRNA_m5C:0 55326 chr9 125316009 125316009 1 + C G SKCM 125316008 + 125315988 125316028 41 GACCCGCGTGGCTTTCTGTGCCCAGAAAGCCATCCCTCATT GACCCGCGTGGCTTTCTGTGCGCAGAAAGCCATCCCTCATT < 41bp 0.502271009719709 0.798864369237982 0.019032538 0.10617712 prediction 0.593186719036547 Functional Gain - OR1N2 ENSG00000171501 CDS Human protein_coding chr9:125316008 chr9:125316009 synonymous SNV . 0 22 hm5C_associated_SNPs_102181 0 0 0 0 0 unknown 0.500231643881637 0.500231643921092 0 7.89108778320724e-11 hm5C_site_55326 DeepMRMD:0;iRNA_m5C:7.89108778320724e-11 Mean corpuscular volume 55327 chrX 2707712 2707712 1 + C A UCEC 2707708 + 2707688 2707728 41 TCTACCCAAGGCCAAAGCCACGCCCTCAACCCCAGCCTGGC TCTACCCAAGGCCAAAGCCACGCCATCAACCCCAGCCTGGC < 41bp 0.393790651430288 0.796591624817982 0.09699389 0.077329874 prediction 0.593183249635963 Functional Gain - XG ENSG00000124343 CDS Human protein_coding chrX:2707708 chrX:2707712 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_102182 0 0 0 0 1 exosome 0.500231643921048 0.500231643921058 0 2.02060590481778e-14 hm5C_site_55327 DeepMRMD:0;iRNA_m5C:2.02060590481778e-14 55328 chr20 18608865 18608865 1 + T G LUSC 18608862 + 18608842 18608882 41 CCAGCTCCCGGCACTGCTACCTCTGACCCAAAGCAGGTAAG CCAGCTCCCGGCACTGCTACCTCGGACCCAAAGCAGGTAAG < 41bp 0.416258760125095 0.796588176854828 0.2578063 0.58519787 prediction 0.593176353709657 Functional Gain - DTD1 ENSG00000125821 CDS Human protein_coding chr20:18608862 chr20:18608865 synonymous SNV . 0 24 hm5C_associated_SNPs_102183 0 0 1 0 2 Ribosome 0.500231643921096 0.500231643921094 0.17039574 0 hm5C_site_55328 DeepMRMD:0.17039574;iRNA_m5C:0 55329 chr5 167850580 167850580 1 + C G HNSC 167850579 + 167850559 167850599 41 CCTGTCCTCAGGCAGCAGCCCCGGATCCCTCACGTCCAGCC CCTGTCCTCAGGCAGCAGCCCGGGATCCCTCACGTCCAGCC < 41bp 0.510773236001473 0.807356280812304 0.6505217 0.85659295 prediction 0.593166089621662 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167850579 chr5:167850580 synonymous SNV . 0 22 hm5C_associated_SNPs_102184 0 0 1 0 1 Ribosome 0.500231409168977 0.500231640564257 0.4121425 4.62790560096238e-07 hm5C_site_55329 DeepMRMD:0.4121425;iRNA_m5C:4.62790560096238e-07 55330 chr18 74962718 74962718 1 + C A LUAD 74962714 + 74962694 74962734 41 GGCAAGCCGCGGAGCACCACCAACCTGTTCATCCTCAACCT GGCAAGCCGCGGAGCACCACCAACATGTTCATCCTCAACCT < 41bp 0.599206517472632 0.895787209750794 0.12721306 0.050038785 prediction 0.593161384556324 Functional Gain - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74962714 chr18:74962718 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102185 0 0 0 0 0 exosome 0.500231643920919 0.500231643993995 0 1.4615220145231e-10 hm5C_site_55330 DeepMRMD:0;iRNA_m5C:1.4615220145231e-10 55331 chr11 64853966 64853966 1 + C G UCEC 64853965 + 64853945 64853985 41 ACCTGCCGGCTATCAGTGCCCCAGCTGCAATGGCCCCATCT ACCTGCCGGCTATCAGTGCCCGAGCTGCAATGGCCCCATCT < 41bp 0.509786192663641 0.806353134158189 0.2424855 0.5825335 prediction 0.593133882989095 Functional Gain - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64853965 chr11:64853966 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_102186 0 0 1 0 1 Ribosome 0.500231643921068 0.500231643918581 0.165067 0 hm5C_site_55331 DeepMRMD:0.165067;iRNA_m5C:0 55332 chr12 113448001 113448001 1 + C A rs140763476 113447997 + 113447977 113448017 41 GAATGTAGGGAAGAGGTGGCCAAGCCAACCGTGGGGTTAGC GAATGTAGGGAAGAGGTGGCCAAGACAACCGTGGGGTTAGC < 41bp 0.454845080432581 0.79654990736692 0.6883395 0.45397004 prediction 0.59309981473384 Functional Gain - OAS2 ENSG00000257452 ncRNA_intronic Human antisense chr12:113447997 chr12:113448001 . . 0 25 hm5C_associated_SNPs_102187 0 0 0 0 0 exosome 0.500231643907575 0.500231643919363 0 2.3576030017125e-11 hm5C_site_55332 DeepMRMD:0;iRNA_m5C:2.3576030017125e-11 55333 chr13 53603065 53603065 1 + C A LUAD 53603061 + 53603041 53603081 41 GATGTGGGACCTCCAATTCCCAGCCCCGGCTTCAGCTCTTT GATGTGGGACCTCCAATTCCCAGCACCGGCTTCAGCTCTTT < 41bp 0.585916995320341 0.882466684832761 0.19082028 0.25936574 prediction 0.593099379024839 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53603061 chr13:53603065 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_102188 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55333 DeepMRMD:0;iRNA_m5C:0 55334 chr20 30674563 30674563 1 + T G LUSC 30674560 + 30674540 30674580 41 CAAGCTGGTCAAACTTCATGCGGTGGTCACCAAGGAGCCCA CAAGCTGGTCAAACTTCATGCGGGGGTCACCAAGGAGCCCA < 41bp 0.595746030444669 0.89229065863283 0.19275734 0.8546644 prediction 0.593089256376321 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30674560 chr20:30674563 nonsynonymous SNV 0.075 4 24 hm5C_associated_SNPs_102189 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0.7093288 0 hm5C_site_55334 DeepMRMD:0.7093288;iRNA_m5C:0 55335 chr1 43818295 43818295 1 + C A LUSC 43818291 + 43818271 43818311 41 CTTTGCCCCTGTGTTCCTCCCAGGCCCAGATGGACTACCGA CTTTGCCCCTGTGTTCCTCCCAGGACCAGATGGACTACCGA < 41bp 0.416343237791631 0.796533591986499 0.41312665 0.5282683 prediction 0.593067183972999 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43818291 chr1:43818295 nonsynonymous SNV 0.868 1 25 hm5C_associated_SNPs_102190 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.0565366 0 hm5C_site_55335 DeepMRMD:0.0565366;iRNA_m5C:0 55336 chr19 9745204 9745204 1 + C A rs143393723 9745200 + 9745180 9745220 41 GTCTTTCCCGCCGACCAAAACTGCCCTTCACTATCACTGTA GTCTTTCCCGCCGACCAAAACTGCACTTCACTATCACTGTA < 41bp 0.450773811272117 0.79651761197993 0.21255392 0.32229528 prediction 0.593035223959861 Functional Gain - ZNF561-AS1 ENSG00000267106 UTR3 Human processed_transcript chr19:9745200 chr19:9745204 . . 0 25 hm5C_associated_SNPs_102191 0 0 0 1 0 unknown 0.5002316821675 0.500231643921093 0 0 hm5C_site_55336 DeepMRMD:0;iRNA_m5C:0 55337 chr14 88477813 88477813 1 + C A LUAD 88477809 + 88477789 88477829 41 CTGATCTGCAACCGGAAAGTCTACCAAGCTGTGCGGCACAA CTGATCTGCAACCGGAAAGTCTACAAAGCTGTGCGGCACAA < 41bp 0.385415564976152 0.796499227692973 0.042948365 0.9384489 prediction 0.592998455385947 Functional Gain - GPR65 ENSG00000140030 CDS Human protein_coding chr14:88477809 chr14:88477813 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_102192 0 0 0 0 0 exosome 0.500231257038218 0.500228908930427 0.8768978 0 hm5C_site_55337 DeepMRMD:0.8768978;iRNA_m5C:0 55338 chr6 88049844 88049844 1 + T G COAD 88049841 + 88049821 88049861 41 TTTTCTTTGACAGAACAAACCTGTAATGGCTTTCGGATTGG TTTTCTTTGACAGAACAAACCTGGAATGGCTTTCGGATTGG < 41bp 0.559626590854699 0.856119972097068 0.20087993 0.5167522 prediction 0.592986762484738 Functional Gain - SMIM8 ENSG00000111850 CDS Human protein_coding chr6:88049841 chr6:88049844 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_102193 0 0 1 0 1 Cytosol 0.500231643888799 0.500231642676556 0.0335044 0 hm5C_site_55338 DeepMRMD:0.0335044;iRNA_m5C:0 55339 chr19 11793389 11793389 1 + T G rs575952815 11793386 + 11793366 11793406 41 AGTGACCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAGG AGTGACCTTTGAGGATGTGGCTGGGAACTTCACCCAGGAGG < 41bp 0.44780096045365 0.796467370874141 0.13530591 0.38185322 prediction 0.592934741748281 Functional Gain - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11793386 chr19:11793389 . . 0 24 hm5C_associated_SNPs_102194 0 0 0 0 2 unknown 0.500231643921085 0.500231643921092 0 1.3988810110277e-14 hm5C_site_55339 DeepMRMD:0;iRNA_m5C:1.3988810110277e-14 55340 chr1 111825335 111825335 1 + C A LUSC 111825331 + 111825311 111825351 41 CGTGTGAGCCCTCCTCAGGACAAGCATCTCTTCACTGTCCT CGTGTGAGCCCTCCTCAGGACAAGAATCTCTTCACTGTCCT < 41bp 0.451272336211741 0.796446452587686 0.059961677 0.12567109 prediction 0.592892905175372 Functional Gain - CHIAP2 ENSG00000203878 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:111825331 chr1:111825335 . . 0 25 hm5C_associated_SNPs_102195 0 0 0 0 1 unknown 0.500230865883252 0.500231608147577 0 1.48452865111892e-06 hm5C_site_55340 DeepMRMD:0;iRNA_m5C:1.48452865111892e-06 55341 chr17 57918682 57918682 1 + C A LIHC 57918678 + 57918658 57918698 41 GTTGAATCTCATGGCAACACCAGTCGATGGGCTGTCTGACA GTTGAATCTCATGGCAACACCAGTAGATGGGCTGTCTGACA < 41bp 0.434007700862308 0.796437958055289 0.3235308 0.26428735 prediction 0.592875916110579 Functional Gain - MIR21 ENSG00000199004 ncRNA_exonic Human other chr17:57918678 chr17:57918682 . . 0 25 hm5C_associated_SNPs_102196 0 0 1 0 0 unknown 0.500201073953448 0.50023164392083 0 6.11399347645314e-05 hm5C_site_55341 DeepMRMD:0;iRNA_m5C:6.11399347645314e-05 55342 chr3 183853021 183853021 1 + T G rs187117854 183853018 + 183852998 183853038 41 CCGGGATCAACCTCAGACCCCTGTGGGCTCCCGGGGAAGAC CCGGGATCAACCTCAGACCCCTGGGGGCTCCCGGGGAAGAC < 41bp 0.591209432775308 0.88762008254296 0.0870004 0.34478348 prediction 0.592821299535304 Functional Gain - EIF2B5 ENSG00000272721 ncRNA_exonic Human antisense chr3:183853018 chr3:183853021 . . 0 24 hm5C_associated_SNPs_102197 1 0 0 0 0 Ribosome 0.500231678352342 0.50023164388255 0 0 hm5C_site_55342 DeepMRMD:0;iRNA_m5C:0 Leukoencephalopathy with vanishing white matter Leukoencephalopathy with vanishing white matter 55343 chr17 66033297 66033297 1 + T A LUSC 66033293 + 66033273 66033313 41 ACACCAGCTGCCCGTCTTCACAGATTCAAGAACAAGGGAAA ACACCAGCTGCCCGTCTTCACAGAATCAAGAACAAGGGAAA < 41bp 0.512413967483181 0.808815458118005 0.2464535 0.16386762 prediction 0.592802981269649 Functional Gain - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033293 chr17:66033297 nonsynonymous SNV 0.862 3 25 hm5C_associated_SNPs_102198 0 0 1 0 2 Cytosol 0.50023164524815 0.500236867595404 0 1.04446945090597e-05 hm5C_site_55343 DeepMRMD:0;iRNA_m5C:1.04446945090597e-05 55344 chr6 146755760 146755760 1 + C A rs535851988 146755756 + 146755736 146755776 41 ACCTGCAGGCGGCCAGCAAACTGACCCCGGATGATTCGCCT ACCTGCAGGCGGCCAGCAAACTGAACCCGGATGATTCGCCT < 41bp 0.594011143262237 0.890409385260051 0.6905587 0.8887899 prediction 0.592796483995629 Functional Gain - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146755756 chr6:146755760 nonsynonymous SNV 0.944 3 25 hm5C_associated_SNPs_102199 0 0 0 0 0 exosome 0.500231643791098 0.500231643933172 0.3964624 2.84147150253489e-10 hm5C_site_55344 DeepMRMD:0.3964624;iRNA_m5C:2.84147150253489e-10 55345 chrX 102004814 102004814 1 + T G STAD 102004812 + 102004792 102004832 41 AGACCATAGATGAGATTAGACGTCAAATCAGGATCAGGGAG AGACCATAGATGAGATTAGACGGCAAATCAGGATCAGGGAG < 41bp 0.526583754247709 0.822977542826515 0.102491975 0.14556572 prediction 0.592787577157612 Functional Gain - ARMCX5-GPRASP2;BHLHB9 ENSG00000198908 CDS Human protein_coding chrX:102004812 chrX:102004814 synonymous SNV . 0 23 hm5C_associated_SNPs_102200 0 0 1 0 0 unknown 0.500231643921489 0.500231643921283 0 0 hm5C_site_55345 DeepMRMD:0;iRNA_m5C:0 55346 chr2 232457817 232457817 1 + C A LUAD 232457813 + 232457793 232457833 41 CTGACTGGCAGGATATAGATCAGGCCTCCTTCAAGACGGCC CTGACTGGCAGGATATAGATCAGGACTCCTTCAAGACGGCC < 41bp 0.575608108884741 0.871994987282034 0.7274038 0.3011633 prediction 0.592773756794584 Functional Gain - TEX44 ENSG00000177673 CDS Human protein_coding chr2:232457813 chr2:232457817 nonsynonymous SNV 0.082 1 25 hm5C_associated_SNPs_102201 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0 0 hm5C_site_55346 DeepMRMD:0;iRNA_m5C:0 55347 chr18 63530135 63530135 1 + T A LIHC 63530131 + 63530111 63530151 41 GGAGCCCTGATAGCCATACTCGCCTGTGTCTTGACATTATT GGAGCCCTGATAGCCATACTCGCCAGTGTCTTGACATTATT < 41bp 0.522342794247088 0.81872727430476 0.17391446 0.5212516 prediction 0.592768960115345 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63530131 chr18:63530135 nonsynonymous SNV 0.934 3 25 hm5C_associated_SNPs_102202 0 0 0 0 1 exosome 0.50023164392307 0.500231644329628 0.0425032000000001 8.13115574871404e-10 hm5C_site_55347 DeepMRMD:0.0425032000000001;iRNA_m5C:8.13115574871404e-10 55348 chrX 54836400 54836400 1 + T A COAD 54836396 + 54836376 54836416 41 GACTGATACCCAGGTTCTGGCAGCTGAAAACAAGAGTCTAG GACTGATACCCAGGTTCTGGCAGCAGAAAACAAGAGTCTAG < 41bp 0.506994045470561 0.803367124334869 0.27473128 0.16429952 prediction 0.592746157728615 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54836396 chrX:54836400 synonymous SNV . 0 25 hm5C_associated_SNPs_102203 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_55348 DeepMRMD:0;iRNA_m5C:0 55349 chr16 21261202 21261202 1 + T A LUAD 21261198 + 21261178 21261218 41 CTTACAGACTCCACTGGATGCTGCTGCCAGCAGGGAGCAGA CTTACAGACTCCACTGGATGCTGCAGCCAGCAGGGAGCAGA < 41bp 0.529215667762441 0.825586545366407 0.11527258 0.14816213 prediction 0.592741755207932 Functional Gain - ANKS4B ENSG00000175311 CDS Human protein_coding chr16:21261198 chr16:21261202 synonymous SNV . 0 25 hm5C_associated_SNPs_102204 0 0 0 0 0 exosome 0.500231645561696 0.500231689756912 0 8.83904336390628e-08 hm5C_site_55349 DeepMRMD:0;iRNA_m5C:8.83904336390628e-08 55350 chr7 23313746 23313746 1 + T G BLCA 23313744 + 23313724 23313764 41 AATGTGGTCAGAAGCAAAGGCCTGAGTGTCTTTCTCAACCG AATGTGGTCAGAAGCAAAGGCCGGAGTGTCTTTCTCAACCG < 41bp 0.512281938716027 0.808633765181617 0.04325244 0.33852974 prediction 0.592703652931179 Functional Gain - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23313744 chr7:23313746 nonsynonymous SNV 0.857 3 23 hm5C_associated_SNPs_102205 0 0 0 0 1 Endoplasmic reticulum 0.500207424928655 0.500231517644514 0 4.81854317180286e-05 hm5C_site_55350 DeepMRMD:0;iRNA_m5C:4.81854317180286e-05 55351 chr21 33784964 33784964 1 + T G rs570709241 33784961 + 33784941 33784981 41 CGGGGATCCTCGCCCCGCCCCAGTTCTCCGCCCCCTCCCCT CGGGGATCCTCGCCCCGCCCCAGGTCTCCGCCCCCTCCCCT < 41bp 0.434298082790626 0.796349359001081 0.28250742 0.85931414 prediction 0.592698718002162 Functional Gain - EVA1C ENSG00000166979 UTR5 Human protein_coding chr21:33784961 chr21:33784964 . . 0 24 hm5C_associated_SNPs_102206 0 0 0 0 0 Ribosome 0.500231643921839 0.500231643920763 0.71862828 0 hm5C_site_55351 DeepMRMD:0.71862828;iRNA_m5C:0 55352 chr6 76001294 76001294 1 + T G rs547049093 76001291 + 76001271 76001311 41 CTTTAGATTGACAGCAGCGGCTGTGGAGTAACATCTGAATG CTTTAGATTGACAGCAGCGGCTGGGGAGTAACATCTGAATG < 41bp 0.456652310123723 0.796338586312255 0.024221808 0.080041915 prediction 0.592677172624509 Functional Gain - LOC100506804 ENSG00000225793 ncRNA_intronic Human lincRNA chr6:76001291 chr6:76001294 . . 0 24 hm5C_associated_SNPs_102207 0 0 0 0 0 unknown 0.500231642479705 0.500231643553769 0 2.14812678756005e-09 hm5C_site_55352 DeepMRMD:0;iRNA_m5C:2.14812678756005e-09 55353 chr6 161134078 161134078 1 + C A rs146415258 161134074 + 161134054 161134094 41 GGAGAACTACTGCAGGAATCCAGACAACGATCCGCAGGGGC GGAGAACTACTGCAGGAATCCAGAAAACGATCCGCAGGGGC < 41bp 0.391240417829004 0.79632775293622 0.39018908 0.43801862 prediction 0.592655505872439 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161134074 chr6:161134078 nonsynonymous SNV 0.620 1 25 hm5C_associated_SNPs_102208 0 0 0 0 2 exosome 0.500231643921092 0.50023164392108 0 0 hm5C_site_55353 DeepMRMD:0;iRNA_m5C:0 55354 chr14 101195281 101195281 1 + C A LUAD 101195277 + 101195257 101195297 41 CCCCCACCCATTGCAGGTGCCAGCCTGGCTGGCAGGGTCCC CCCCCACCCATTGCAGGTGCCAGCATGGCTGGCAGGGTCCC < 41bp 0.397922153057016 0.79632730564292 0.38316485 0.4778465 prediction 0.592654611285839 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101195277 chr14:101195281 nonsynonymous SNV 0.970 3 25 hm5C_associated_SNPs_102209 0 0 1 0 1 Endoplasmic reticulum 0.50023164392111 0.500231643921163 0 1.04805053524615e-13 hm5C_site_55354 DeepMRMD:0;iRNA_m5C:1.04805053524615e-13 55355 chr2 113736268 113736268 1 + C A UCEC 113736264 + 113736244 113736284 41 GTGGAGGAAGGGCCGTCTATCAATCAAGTGAATCAAATGCT GTGGAGGAAGGGCCGTCTATCAATAAAGTGAATCAAATGCT < 41bp 0.425444739965326 0.796317562181782 0.16981998 0.2763723 prediction 0.592635124363563 Functional Gain - IL36G ENSG00000136688 CDS Human protein_coding chr2:113736264 chr2:113736268 stopgain 0.001 0 25 hm5C_associated_SNPs_102210 0 0 0 0 2 exosome 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_55355 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 55356 chr2 155555871 155555871 1 + T A UCEC 155555867 + 155555847 155555887 41 CCAAGAAGCGCGCCGAGACCCTCATGTTCAGCGAGCACGCG CCAAGAAGCGCGCCGAGACCCTCAAGTTCAGCGAGCACGCG < 41bp 0.538408581134075 0.834707066239247 0.21737981 0.5171078 prediction 0.592596970210344 Functional Gain - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155555867 chr2:155555871 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102211 0 0 0 0 0 exosome 0.500231643920836 0.500231643979757 0.0342156 1.17843512725813e-10 hm5C_site_55356 DeepMRMD:0.0342156;iRNA_m5C:1.17843512725813e-10 55357 chr8 36780120 36780120 1 + C A UCEC 36780116 + 36780096 36780136 41 TTCTACGGGCACTGTTTTTTCCGGCAGCTTCTTGGATTCTC TTCTACGGGCACTGTTTTTTCCGGAAGCTTCTTGGATTCTC < 41bp 0.407072573399148 0.796285050084238 0.8434937 0.89053404 prediction 0.592570100168477 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780116 chr8:36780120 synonymous SNV . 0 25 hm5C_associated_SNPs_102212 0 0 0 1 1 unknown 0.500231643934064 0.500231643856203 0.09408068 0 hm5C_site_55357 DeepMRMD:0.09408068;iRNA_m5C:0 55358 chr16 721934 721934 1 + C G HNSC 721933 + 721913 721953 41 CCCAGCAGCGCCCTGGGGCCCCGAGCTCCCACGCACAGTCC CCCAGCAGCGCCCTGGGGCCCGGAGCTCCCACGCACAGTCC < 41bp 0.507580348613488 0.803860185111658 0.41565058 0.4423921 prediction 0.59255967299634 Functional Gain - RHOT2 ENSG00000140983 CDS Human protein_coding chr16:721933 chr16:721934 synonymous SNV . 0 22 hm5C_associated_SNPs_102213 0 0 1 0 2 Ribosome 0.500231643920988 0.500231643921092 0 2.08499884024604e-13 hm5C_site_55358 DeepMRMD:0;iRNA_m5C:2.08499884024604e-13 55359 chr3 57107737 57107737 1 + T A LGG 57107733 + 57107713 57107753 41 CTTGGGCCCCATGTCCAGTTCTGCTCTGACTTGTGGGTCCA CTTGGGCCCCATGTCCAGTTCTGCACTGACTTGTGGGTCCA < 41bp 0.532143902766578 0.828410186093716 0.04926282 0.21762219 prediction 0.592532566654276 Functional Gain - SPATA12 ENSG00000186451 CDS Human protein_coding chr3:57107733 chr3:57107737 synonymous SNV . 0 25 hm5C_associated_SNPs_102214 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55359 DeepMRMD:0;iRNA_m5C:0 55360 chr15 75641449 75641449 1 + C A rs187873972 75641445 + 75641425 75641465 41 TGAGCCCTCTGCCTGGGGCCCAGCCCCAACAGGAGCCACTG TGAGCCCTCTGCCTGGGGCCCAGCACCAACAGGAGCCACTG < 41bp 0.408310093983097 0.796221941462984 0.41784924 0.31756756 prediction 0.592443882925968 Functional Gain - NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75641445 chr15:75641449 nonsynonymous SNV 0.023 1 25 hm5C_associated_SNPs_102215 0 0 0 0 0 chromatin 0.500231643921038 0.500231643921092 0 1.0813572259849e-13 hm5C_site_55360 DeepMRMD:0;iRNA_m5C:1.0813572259849e-13 55361 chr4 110415804 110415804 1 + C G GBM 110415803 + 110415783 110415823 41 CATCAGCAAGCAGTCCTGCTCCTGATCCCGCCCCTGAACCT CATCAGCAAGCAGTCCTGCTCGTGATCCCGCCCCTGAACCT < 41bp 0.507312573641094 0.803513007876463 0.14119545 0.5639591 prediction 0.592400868470737 Functional Gain - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110415803 chr4:110415804 nonsynonymous SNV 0.948 1 22 hm5C_associated_SNPs_102216 0 0 1 0 1 Cytosol 0.500231643920913 0.500231643705023 0.1279182 0 hm5C_site_55361 DeepMRMD:0.1279182;iRNA_m5C:0 55362 chr2 242814381 242814381 1 + C A LUAD 242814377 + 242814357 242814397 41 CCATCGCTGAGGGCCCTGCCCCCCCTGCGGGGGCCTCTCTC CCATCGCTGAGGGCCCTGCCCCCCATGCGGGGGCCTCTCTC < 41bp 0.403645762305856 0.796187639623363 0.10696763 0.3446069 prediction 0.592375279246725 Functional Gain - RTP5 ENSG00000188011 CDS Human protein_coding chr2:242814377 chr2:242814381 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_102217 0 0 0 0 0 exosome 0.500231643942785 0.500231643932263 0 0 hm5C_site_55362 DeepMRMD:0;iRNA_m5C:0 55363 chr5 167855099 167855099 1 + C A rs6874818 167855095 + 167855075 167855115 41 CTGTGTCTCAGCCGCCGTATCGGACGAGTCAGTGGCTGGAG CTGTGTCTCAGCCGCCGTATCGGAAGAGTCAGTGGCTGGAG < 41bp 0.606545503620749 0.902696324470325 0.88340926 0.90736306 prediction 0.592301641699151 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167855095 chr5:167855099 nonsynonymous SNV 0.029 3 25 hm5C_associated_SNPs_102218 0 0 1 0 2 Ribosome 0.500231645094165 0.500231643921092 0.0479076000000001 0 hm5C_site_55363 DeepMRMD:0.0479076000000001;iRNA_m5C:0 55364 chr1 175086216 175086216 1 + C G rs111972436 175086215 + 175086195 175086235 41 ACGGAGAGACCAGGGAGGTTCCGGTGGGGAAGGAGCAGAGT ACGGAGAGACCAGGGAGGTTCGGGTGGGGAAGGAGCAGAGT < 41bp 0.5073412234478 0.803474066279957 0.8583499 0.9095584 prediction 0.592265685664314 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175086215 chr1:175086216 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_102219 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.102417 0 hm5C_site_55364 DeepMRMD:0.102417;iRNA_m5C:0 55365 chr8 105361408 105361408 1 + C A THCA 105361404 + 105361384 105361424 41 ACAACCACAGAGGTGTTGTCCTCCCTGGGTCAGAAGCTACT ACAACCACAGAGGTGTTGTCCTCCATGGGTCAGAAGCTACT < 41bp 0.366044479804989 0.796096109690757 0.26702937 0.95316213 prediction 0.592192219381514 Functional Gain - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361404 chr8:105361408 nonsynonymous SNV 0.575 0 25 hm5C_associated_SNPs_102220 0 0 0 0 0 exosome 0.50023164392372 0.500231932422565 0.90632426 5.76997690293624e-07 hm5C_site_55365 DeepMRMD:0.90632426;iRNA_m5C:5.76997690293624e-07 55366 chr5 5462494 5462494 1 + T G rs78050716 5462491 + 5462471 5462511 41 GACTGTGTCAGGAGGGTTTTCTGTTGAAGAAACCAGCTGTG GACTGTGTCAGGAGGGTTTTCTGGTGAAGAAACCAGCTGTG < 41bp 0.434666290058468 0.796095044096842 0.32280388 0.88593 prediction 0.592190088193683 Functional Gain - ICE1 ENSG00000164151 CDS Human protein_coding chr5:5462491 chr5:5462494 nonsynonymous SNV 0.021 0 24 hm5C_associated_SNPs_102221 0 0 1 0 0 Nucleus 0.500231643921213 0.500231645543875 0.77186 3.2453248977049e-09 hm5C_site_55366 DeepMRMD:0.77186;iRNA_m5C:3.2453248977049e-09 55367 chr10 73122361 73122361 1 + T A UCEC 73122357 + 73122337 73122377 41 GCTCTACCCTCCTGGTGCACCTCATCTAGAAGGGAGGACAC GCTCTACCCTCCTGGTGCACCTCAACTAGAAGGGAGGACAC < 41bp 0.530266987641991 0.826343181170327 0.23090124 0.7812454 prediction 0.592152387056671 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73122357 chr10:73122361 nonsynonymous SNV 0.774 3 25 hm5C_associated_SNPs_102222 0 0 1 1 0 chromatin 0.500231643921092 0.500231643921091 0.5624908 0 hm5C_site_55367 DeepMRMD:0.5624908;iRNA_m5C:0 55368 chr12 12045261 12045261 1 + T G rs541588827 12045258 + 12045238 12045278 41 AGGGCAGTCTCAGTTGCAATCAGTGTGTGCCCAGCCTGGGC AGGGCAGTCTCAGTTGCAATCAGGGTGTGCCCAGCCTGGGC < 41bp 0.573359044315731 0.869399521676884 0.7492869 0.9324051 prediction 0.592080954722306 Functional Gain - ETV6 ENSG00000139083 UTR3 Human protein_coding chr12:12045258 chr12:12045261 . . 0 24 hm5C_associated_SNPs_102223 0 0 0 0 0 Cytosol 0.500222882595111 0.50023432199478 0.3662364 2.28787993392654e-05 hm5C_site_55368 DeepMRMD:0.3662364;iRNA_m5C:2.28787993392654e-05 55369 chr7 1028376 1028376 1 + C G rs149976257 1028375 + 1028355 1028395 41 TGCCCCCGCCTGGCGTCAGTCCGGCCTCCCTGGACACCACG TGCCCCCGCCTGGCGTCAGTCGGGCCTCCCTGGACACCACG < 41bp 0.503433903551668 0.799472422694241 0.880606 0.92958605 prediction 0.592077038285146 Functional Gain - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1028375 chr7:1028376 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_102224 0 0 0 0 0 nucleus 0.500231723195883 0.500231651235522 0.0979601000000001 0 hm5C_site_55369 DeepMRMD:0.0979601000000001;iRNA_m5C:0 55370 chr3 49841970 49841970 1 + C A LUAD 49841966 + 49841946 49841986 41 AGTCAGTGGCCTCCCCATGCCCAGCAGGGCCCCTGTAGCCA AGTCAGTGGCCTCCCCATGCCCAGAAGGGCCCCTGTAGCCA < 41bp 0.403312399872588 0.796012684550257 0.011161059 0.03325376 prediction 0.592025369100515 Functional Gain - FAM212A ENSG00000185614 CDS Human protein_coding chr3:49841966 chr3:49841970 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_102225 0 0 0 0 0 exosome 0.500231643921093 0.500231643921093 0 6.66133814775094e-16 hm5C_site_55370 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 55371 chr7 99971341 99971341 1 + C A PAAD 99971337 + 99971317 99971357 41 TGCTGCCGCCAGCATTTCTGCAGCCTAGTGAGTACCCAGGA TGCTGCCGCCAGCATTTCTGCAGCATAGTGAGTACCCAGGA < 41bp 0.592702979700624 0.888698394647112 0.31727594 0.2991321 prediction 0.591990829892977 Functional Gain - PILRA ENSG00000085514 CDS Human protein_coding chr7:99971337 chr7:99971341 nonsynonymous SNV 0.047 2 25 hm5C_associated_SNPs_102226 0 0 1 0 1 Nucleus 0.50023248117805 0.500231631568249 0 0 hm5C_site_55371 DeepMRMD:0;iRNA_m5C:0 55372 chr10 74658671 74658671 1 + C A COAD 74658667 + 74658647 74658687 41 GCGACGGCATTGTGCAACGCCAGGCTTGTGCCAGCTTCAAT GCGACGGCATTGTGCAACGCCAGGATTGTGCCAGCTTCAAT < 41bp 0.607017548778655 0.903008863963301 0.41919926 0.3736434 prediction 0.591982630369293 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74658667 chr10:74658671 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102227 0 0 0 0 0 Cytosol 0.500631731359265 0.50026271595084 0 0 hm5C_site_55372 DeepMRMD:0;iRNA_m5C:0 55373 chr1 89876049 89876049 1 + C A LUSC 89876045 + 89876025 89876065 41 GGAAAATCCTACCTGATTAACAAGCTGGCTCAGAAGAAAAA GGAAAATCCTACCTGATTAACAAGATGGCTCAGAAGAAAAA < 41bp 0.458213085775109 0.795975128431238 0.17735961 0.45131624 prediction 0.591950256862475 Functional Gain - GBP1P1 ENSG00000225492 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:89876045 chr1:89876049 . . 0 25 hm5C_associated_SNPs_102228 0 0 0 0 0 unknown 0.500229412104392 0.500231659293847 0 4.49437891014703e-06 hm5C_site_55373 DeepMRMD:0;iRNA_m5C:4.49437891014703e-06 55374 chr20 3733096 3733096 1 + C A rs574119522 3733092 + 3733072 3733112 41 TGCAAGACAGAGCGCGCAGCCCGGCAAGGGGCATGTGACCC TGCAAGACAGAGCGCGCAGCCCGGAAAGGGGCATGTGACCC < 41bp 0.42512678101833 0.79595951739777 0.06870416 0.13574219 prediction 0.591919034795539 Functional Gain - HSPA12B ENSG00000132622 UTR3 Human protein_coding chr20:3733092 chr20:3733096 . . 0 25 hm5C_associated_SNPs_102229 0 0 0 0 0 exosome 0.500231645504922 0.500231643738469 0 0 hm5C_site_55374 DeepMRMD:0;iRNA_m5C:0 55375 chr12 27787921 27787921 1 + C A READ 27787917 + 27787897 27787937 41 CTCCATTCATGGGAAGTTTGCGAGCTCTGCACCTTGTGGAA CTCCATTCATGGGAAGTTTGCGAGATCTGCACCTTGTGGAA < 41bp 0.420195208361537 0.795956211028064 0.91919136 0.93435603 prediction 0.591912422056127 Functional Gain - PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27787917 chr12:27787921 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_102230 0 0 1 0 1 Nucleus 0.500231644131306 0.500231634145198 0.03032934 0 hm5C_site_55375 DeepMRMD:0.03032934;iRNA_m5C:0 55376 chr16 27460410 27460410 1 + G T UCEC 27460414 - 27460394 27460434 41 CCAGGGGTGAGCCCGCCTCACTCTCTGAGACCCCTCCAGGT CCAGGGGTGAGCCCGCCTCACTCTATGAGACCCCTCCAGGT < 41bp 0.387383872764532 0.795954595926698 0.17364383 0.94739676 prediction 0.591909191853397 Functional Gain - IL21R ENSG00000103522 CDS Human protein_coding chr16:27460414 chr16:27460410 stopgain 0.411 0 25 hm5C_associated_SNPs_102231 0 0 0 0 0 nucleus 0.500231642913165 0.500231643921093 0.89479352 2.01585681480765e-09 hm5C_site_55376 DeepMRMD:0.89479352;iRNA_m5C:2.01585681480765e-09 55377 chr1 153751617 153751617 1 + C G rs144302187 153751616 + 153751596 153751636 41 GGGGGAGAATGTGGCCACAACCGAGGTGGCAGAGGTCTTCG GGGGGAGAATGTGGCCACAACGGAGGTGGCAGAGGTCTTCG < 41bp 0.495534082408266 0.795923711207985 0.8802513 0.8662145 prediction 0.591847422415969 Functional Gain - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153751616 chr1:153751617 synonymous SNV . 0 22 hm5C_associated_SNPs_102232 0 0 0 0 2 nucleoplasm 0.500232659970609 0.500231560271206 0 0 hm5C_site_55377 DeepMRMD:0;iRNA_m5C:0 55378 chr9 100616706 100616706 1 + C A rs371516340 100616702 + 100616682 100616722 41 CGACGCGGCGGCTGCCGCAGCCGCCGCCGCCGCCGCCGCCG CGACGCGGCGGCTGCCGCAGCCGCAGCCGCCGCCGCCGCCG < 41bp 0.583447527071392 0.879359860430716 0.642454 0.5577384 prediction 0.591824666718647 Functional Gain - FOXE1 ENSG00000178919 CDS Human protein_coding chr9:100616702 chr9:100616706 synonymous SNV . 0 25 hm5C_associated_SNPs_102233 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55378 DeepMRMD:0;iRNA_m5C:0 55379 chr16 31926743 31926743 1 + T A SKCM 31926739 + 31926719 31926759 41 AGCATGTAGCAAATCTTTTACTCGTTCCTCCAATCTTATTG AGCATGTAGCAAATCTTTTACTCGATCCTCCAATCTTATTG < 41bp 0.484536713565509 0.795912250886517 0.02769941 0.04902023 prediction 0.591824501773034 Functional Gain - ZNF267 ENSG00000185947 CDS Human protein_coding chr16:31926739 chr16:31926743 synonymous SNV . 0 25 hm5C_associated_SNPs_102234 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_55379 DeepMRMD:0;iRNA_m5C:0 55380 chr1 178427157 178427157 1 + C A UCEC 178427153 + 178427133 178427173 41 AGTGAGAAGGCCCCTGCACCCAGCCTTGAACCAGCCAGGTG AGTGAGAAGGCCCCTGCACCCAGCATTGAACCAGCCAGGTG < 41bp 0.599019165647912 0.894928609234005 0.47645468 0.7841948 prediction 0.591818887172187 Functional Gain - RASAL2 ENSG00000075391 CDS Human protein_coding chr1:178427153 chr1:178427157 synonymous SNV . 0 25 hm5C_associated_SNPs_102235 0 0 0 0 0 Nucleus 0.500231643921095 0.500231643921092 0.5683896 0 hm5C_site_55380 DeepMRMD:0.5683896;iRNA_m5C:0 55381 chrX 103432834 103432834 1 + C A LUSC 103432830 + 103432810 103432850 41 TGGAGTGAGCGGTGCCAGTGCCAGCGCCAGCAGCAGCAGTG TGGAGTGAGCGGTGCCAGTGCCAGAGCCAGCAGCAGCAGTG < 41bp 0.408958040740694 0.795888464799417 0.6449852 0.8882389 prediction 0.591776929598834 Functional Gain - FAM199X ENSG00000123575 CDS Human protein_coding chrX:103432830 chrX:103432834 nonsynonymous SNV 0.969 4 25 hm5C_associated_SNPs_102236 0 0 1 0 1 Ribosome 0.500231644759623 0.500231643919374 0.4865074 0 hm5C_site_55381 DeepMRMD:0.4865074;iRNA_m5C:0 55382 chr3 25502818 25502818 1 + T A STAD 25502814 + 25502794 25502834 41 GGGTACCACTATGGGGTCAGCGCCTGTGAGGGATGTAAGGT GGGTACCACTATGGGGTCAGCGCCAGTGAGGGATGTAAGGT < 41bp 0.476259127135019 0.79588662262376 0.09937075 0.63641936 prediction 0.59177324524752 Functional Gain - RARB ENSG00000077092 CDS Human protein_coding chr3:25502814 chr3:25502818 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_102237 0 0 1 0 1 nucleoplasm 0.500231643921092 0.500231643921094 0.27283872 2.44249065417534e-15 hm5C_site_55382 DeepMRMD:0.27283872;iRNA_m5C:2.44249065417534e-15 55383 chr3 3887497 3887497 1 + T G UCEC 3887495 + 3887475 3887515 41 TCCAACAAAACCAACATCCGCTTCATGGAGCCCCTGTCCAT TCCAACAAAACCAACATCCGCTGCATGGAGCCCCTGTCCAT < 41bp 0.487238957916647 0.795866084987435 0.050035924 0.13882297 prediction 0.591732169974871 Functional Gain - LRRN1 ENSG00000175928 CDS Human protein_coding chr3:3887495 chr3:3887497 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_102238 0 0 0 0 0 Cytosol 0.500231622597374 0.500219025681717 0 0 hm5C_site_55383 DeepMRMD:0;iRNA_m5C:0 55384 chr16 778414 778414 1 + C A ACC 778410 + 778390 778430 41 GGACGATTGCCCGGACCCACCCGCCCTGTTCTCGGGTACCC GGACGATTGCCCGGACCCACCCGCACTGTTCTCGGGTACCC < 41bp 0.410739881900608 0.795859573000715 0.07934585 0.14142072 prediction 0.591719146001429 Functional Gain - HAGHL ENSG00000103253 CDS Human protein_coding chr16:778410 chr16:778414 synonymous SNV . 0 25 hm5C_associated_SNPs_102239 0 0 0 0 2 Ribosome 0.500231643924166 0.500232124355839 0 9.60863345111918e-07 hm5C_site_55384 DeepMRMD:0;iRNA_m5C:9.60863345111918e-07 55385 chr17 21731522 21731522 1 + C A COAD 21731518 + 21731498 21731538 41 TCAGCAGAGGCTCATCTTTGCAGGCAAGAAGTTGGAAGATG TCAGCAGAGGCTCATCTTTGCAGGAAAGAAGTTGGAAGATG < 41bp 0.576102709862341 0.871946084186716 0.8752078 0.89039433 prediction 0.591686748648751 Functional Gain - UBBP4 ENSG00000263563 CDS Human transcribed_unprocessed_pseudogene chr17:21731518 chr17:21731522 synonymous SNV . 0 25 hm5C_associated_SNPs_102240 0 0 1 0 0 Ribosome 0.500231643921039 0.500231643921092 0.0303730600000001 1.07025499573865e-13 hm5C_site_55385 DeepMRMD:0.0303730600000001;iRNA_m5C:1.07025499573865e-13 55386 chr8 97847387 97847387 1 + T G LUAD 97847385 + 97847365 97847405 41 TTGGCATCTCTCATTCGATCCGTGGCCTCCTTCTCCATCTA TTGGCATCTCTCATTCGATCCGGGGCCTCCTTCTCCATCTA < 41bp 0.474286634865955 0.795827113666486 0.051897734 0.83657193 prediction 0.591654227332971 Functional Gain - CPQ ENSG00000104324 CDS Human protein_coding chr8:97847385 chr8:97847387 nonsynonymous SNV 0.964 3 23 hm5C_associated_SNPs_102241 0 0 1 0 1 Endoplasmic reticulum 0.500232300899343 0.5002316480478 0.67314386 0 hm5C_site_55386 DeepMRMD:0.67314386;iRNA_m5C:0 55387 chr1 11780241 11780241 1 + C A rs115264162 11780237 + 11780217 11780257 41 TTTCAAGTAGGCATTATCACCATGCGACAGGTTGAGGACCG TTTCAAGTAGGCATTATCACCATGAGACAGGTTGAGGACCG < 41bp 0.47419502627269 0.795807882165782 0.2736265 0.24704424 prediction 0.591615764331565 Functional Gain - DRAXIN ENSG00000162490 UTR3 Human protein_coding chr1:11780237 chr1:11780241 . . 0 25 hm5C_associated_SNPs_102242 0 0 0 0 0 exosome 0.500231643875316 0.500231643980791 0 2.10948369883113e-10 hm5C_site_55387 DeepMRMD:0;iRNA_m5C:2.10948369883113e-10 55388 chr12 102590450 102590450 1 + G T LUSC 102590454 - 102590434 102590474 41 AGATGTATGCTGGGAAGAGTCTACCGACCTTGTTGGCAAGT AGATGTATGCTGGGAAGAGTCTACAGACCTTGTTGGCAAGT < 41bp 0.597995074695917 0.893792643725536 0.06487721 0.3324536 prediction 0.591595138059237 Functional Gain - PMCH ENSG00000183395 CDS Human protein_coding chr12:102590454 chr12:102590450 synonymous SNV . 0 25 hm5C_associated_SNPs_102243 0 0 0 0 1 exosome 0.500231645343146 0.500231636451794 0 0 hm5C_site_55388 DeepMRMD:0;iRNA_m5C:0 55389 chr10 74034460 74034460 1 + T A rs111443920 74034456 + 74034436 74034476 41 TGTGCTCTCCTTTCCAGACACGGCTTACCTGGATGGGGTGT TGTGCTCTCCTTTCCAGACACGGCATACCTGGATGGGGTGT < 41bp 0.503138487066674 0.798933036341298 0.13965446 0.27094796 prediction 0.591589098549248 Functional Gain - DDIT4 ENSG00000168209 CDS Human protein_coding chr10:74034456 chr10:74034460 synonymous SNV . 0 25 hm5C_associated_SNPs_102244 0 0 1 0 1 Ribosome 0.500231643921344 0.500231643921365 0 4.10782519111308e-14 hm5C_site_55389 DeepMRMD:0;iRNA_m5C:4.10782519111308e-14 55390 chr3 133494403 133494403 1 + C A STAD 133494399 + 133494379 133494419 41 ACCTGGCCAGAGCCCCGAATCACGCTGTGGTCACACGGAAA ACCTGGCCAGAGCCCCGAATCACGATGTGGTCACACGGAAA < 41bp 0.614499107232477 0.910271888907046 0.21694174 0.30804384 prediction 0.591545563349136 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133494399 chr3:133494403 nonsynonymous SNV 0.752 4 25 hm5C_associated_SNPs_102245 0 0 1 0 2 Cytosol 0.500231643819303 0.500231643921019 0 2.0343260409561e-10 hm5C_site_55390 DeepMRMD:0;iRNA_m5C:2.0343260409561e-10 55391 chr9 134038483 134038483 1 + T G rs35631340 134038481 + 134038461 134038501 41 TGAATCACCTGGTGGATAGTCTTCAGCAGCTCCGCCTTTAC TGAATCACCTGGTGGATAGTCTGCAGCAGCTCCGCCTTTAC < 41bp 0.491540271724173 0.795772302604385 0.5165326 0.6406499 prediction 0.59154460520877 Functional Gain - NUP214 ENSG00000126883 CDS Human protein_coding chr9:134038481 chr9:134038483 synonymous SNV . 0 23 hm5C_associated_SNPs_102246 0 0 1 0 1 Cytosol 0.500231643947292 0.500231639230096 0.2482346 0 hm5C_site_55391 DeepMRMD:0.2482346;iRNA_m5C:0 55392 chr2 217526514 217526514 1 + C A rs3732018 217526510 + 217526490 217526530 41 TGCAGCAGCTTCTCGCTGAGCTTGCGTCTGGCGCGTGCTTC TGCAGCAGCTTCTCGCTGAGCTTGAGTCTGGCGCGTGCTTC < 41bp 0.417914132804679 0.795769685962705 0.13639313 0.21335313 prediction 0.591539371925409 Functional Gain - IGFBP2 ENSG00000115457 CDS Human protein_coding chr2:217526510 chr2:217526514 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102247 0 0 0 0 0 Endoplasmic reticulum 0.500231654411437 0.500231695238435 0 8.1653995120945e-08 hm5C_site_55392 DeepMRMD:0;iRNA_m5C:8.1653995120945e-08 55393 chr6 159653149 159653149 1 + T G UCEC 159653147 + 159653127 159653167 41 AGAAGGCAGAGGAGCTGGATCTTCAGTCGACAGAAATCACT AGAAGGCAGAGGAGCTGGATCTGCAGTCGACAGAAATCACT < 41bp 0.520288716701901 0.816051432357572 0.6150066 0.30170453 prediction 0.591525431311342 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159653147 chr6:159653149 synonymous SNV . 0 23 hm5C_associated_SNPs_102248 0 0 0 0 0 Endoplasmic reticulum 0.500231643921061 0.500231643818089 0 0 hm5C_site_55393 DeepMRMD:0;iRNA_m5C:0 55394 chr22 19119283 19119283 1 + T G SARC 19119281 + 19119261 19119301 41 TTCCGACAGCTCTCCTCCGCCGTCAAGTACTGCCACGACCT TTCCGACAGCTCTCCTCCGCCGGCAAGTACTGCCACGACCT < 41bp 0.541058409690052 0.836820367033314 0.24344245 0.41763198 prediction 0.591523914686524 Functional Gain - TSSK2 ENSG00000206203 CDS Human protein_coding chr22:19119281 chr22:19119283 nonsynonymous SNV 0.957 2 23 hm5C_associated_SNPs_102249 0 0 0 0 0 exosome 0.500231587248761 0.500231667506135 0 1.60514748159812e-07 hm5C_site_55394 DeepMRMD:0;iRNA_m5C:1.60514748159812e-07 55395 chrX 155003700 155003700 1 + C A LAML 155003696 + 155003676 155003716 41 CCCACAAGTCTGATTGGTCTCTGGCTACCATGCCTACTTCT CCCACAAGTCTGATTGGTCTCTGGATACCATGCCTACTTCT < 41bp 0.436072923743765 0.795760424716198 0.42700815 0.81974334 prediction 0.591520849432397 Functional Gain - SPRY3 ENSG00000168939 CDS Human protein_coding chrX:155003696 chrX:155003700 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_102250 0 0 0 0 0 exosome 0.500231638648098 0.500228688818006 0.63948668 0 hm5C_site_55395 DeepMRMD:0.63948668;iRNA_m5C:0 55396 chr1 156616814 156616814 1 + C G rs115373136 156616813 + 156616793 156616833 41 GTCAAGGTGAACGAGGCCTACCGGTTCCGCGTGGCACTGCC GTCAAGGTGAACGAGGCCTACGGGTTCCGCGTGGCACTGCC < 41bp 0.496238859435252 0.795759980792578 0.16454956 0.36187422 prediction 0.591519961585156 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156616813 chr1:156616814 nonsynonymous SNV 0.992 3 22 hm5C_associated_SNPs_102251 1 0 1 0 0 chromatin 0.500232658225852 0.500236950332641 0 8.58421357818884e-06 hm5C_site_55396 DeepMRMD:0;iRNA_m5C:8.58421357818884e-06 not specified not specified 55397 chr16 57732824 57732824 1 + C G LGG 57732823 + 57732803 57732843 41 TTTCCTACAAAACCAACACACCCAAGGAGGAACACCTGCTG TTTCCTACAAAACCAACACACGCAAGGAGGAACACCTGCTG < 41bp 0.512041837153573 0.807801302120474 0.012170315 0.014874101 prediction 0.591518929933801 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57732823 chr16:57732824 nonsynonymous SNV 0.855 0 22 hm5C_associated_SNPs_102252 0 0 0 0 1 cytosol 0.500231643917121 0.500231643073268 0 0 hm5C_site_55397 DeepMRMD:0;iRNA_m5C:0 55398 chr16 28507006 28507006 1 + C G rs113462555 28507005 + 28506985 28507025 41 GGAAGGCTGGTGCTGTTGGGCCAAAGGCGGCAGGGGACAAC GGAAGGCTGGTGCTGTTGGGCGAAAGGCGGCAGGGGACAAC < 41bp 0.496536928284524 0.795730856420739 0.4587727 0.7230444 prediction 0.591461712841477 Functional Gain - APOBR ENSG00000184730 CDS Human protein_coding chr16:28507005 chr16:28507006 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_102253 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.4460888 0 hm5C_site_55398 DeepMRMD:0.4460888;iRNA_m5C:0 55399 chr17 9503470 9503470 1 + T A LUAD 9503466 + 9503446 9503486 41 CCCCAGGACTAAACTGCTGACAGATGTTGGGCCTGCGAAGG CCCCAGGACTAAACTGCTGACAGAAGTTGGGCCTGCGAAGG < 41bp 0.512897969291325 0.808612841458997 0.7208884 0.61071026 prediction 0.591429744335342 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9503466 chr17:9503470 nonsynonymous SNV 0.625 1 25 hm5C_associated_SNPs_102254 0 0 0 0 2 nucleus 0.500231643921094 0.500231643921098 0 8.43769498715119e-15 hm5C_site_55399 DeepMRMD:0;iRNA_m5C:8.43769498715119e-15 55400 chr3 195452953 195452953 1 + T A OV 195452949 + 195452929 195452969 41 CACCACAGAGTCAGCTGCACCTGATGCCACGGTTGGGACCC CACCACAGAGTCAGCTGCACCTGAAGCCACGGTTGGGACCC < 41bp 0.514232541827948 0.809940367678579 0.4165903 0.45523453 prediction 0.591415651701262 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195452949 chr3:195452953 nonsynonymous SNV 0.023 0 25 hm5C_associated_SNPs_102255 0 0 0 1 0 Nucleus 0.500236112220471 0.500231890180887 0 0 hm5C_site_55400 DeepMRMD:0;iRNA_m5C:0 55401 chr3 51696623 51696623 1 + C A LUAD 51696619 + 51696599 51696639 41 GGAATCCCGTCAGAGCTCCCCAAGCACCAATGCCGCCCTGC GGAATCCCGTCAGAGCTCCCCAAGAACCAATGCCGCCCTGC < 41bp 0.403597918485514 0.795682606381875 0.501458 0.8198674 prediction 0.591365212763749 Functional Gain - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51696619 chr3:51696623 nonsynonymous SNV 0.468 2 25 hm5C_associated_SNPs_102256 0 0 0 0 0 chromatin 0.500231643920807 0.500231643921092 0.6368188 5.71098723867181e-13 hm5C_site_55401 DeepMRMD:0.6368188;iRNA_m5C:5.71098723867181e-13 55402 chr19 1227940 1227940 1 + C A rs535975204 1227936 + 1227916 1227956 41 CCCAGCGCCGTCCGGCGGCCCCGCCGCAGACCAGCTGGCGG CCCAGCGCCGTCCGGCGGCCCCGCAGCAGACCAGCTGGCGG < 41bp 0.461545227093286 0.795680413567514 0.28227985 0.4035597 prediction 0.591360827135028 Functional Gain - STK11 ENSG00000118046 UTR3 Human protein_coding chr19:1227936 chr19:1227940 . . 0 25 hm5C_associated_SNPs_102257 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921155 0 1.24789067967868e-13 hm5C_site_55402 DeepMRMD:0;iRNA_m5C:1.24789067967868e-13 55403 chr1 202205096 202205096 1 + T G BLCA 202205093 + 202205073 202205113 41 GAGGAATCCCCGCAGAGGCGCTGTGGGAGCTGCCGAGCCTG GAGGAATCCCCGCAGAGGCGCTGGGGGAGCTGCCGAGCCTG < 41bp 0.399724872756597 0.795670316214632 0.40165 0.8372441 prediction 0.591340632429265 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202205093 chr1:202205096 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_102258 0 0 0 0 2 nucleoplasm 0.500231643921092 0.500231643280418 0.6744882 0 hm5C_site_55403 DeepMRMD:0.6744882;iRNA_m5C:0 55404 chr6 151773689 151773689 1 + C A LUSC 151773685 + 151773665 151773705 41 GGGATCGCGGAAAGTGATGGCTGTCGTCCCGGCGTCTCTCT GGGATCGCGGAAAGTGATGGCTGTAGTCCCGGCGTCTCTCT < 41bp 0.585301974215664 0.880971508340802 0.37337244 0.48965678 prediction 0.591339068250276 Functional Gain - ARMT1 ENSG00000146476 CDS Human protein_coding chr6:151773685 chr6:151773689 synonymous SNV . 0 25 hm5C_associated_SNPs_102259 0 0 1 0 1 Ribosome 0.500231645783617 0.500231637680258 0 0 hm5C_site_55404 DeepMRMD:0;iRNA_m5C:0 55405 chr19 7595366 7595366 1 + C G SKCM 7595365 + 7595345 7595385 41 CCTCTTCATCGCGCTCATCACCGGCGCCTACGACACCATCA CCTCTTCATCGCGCTCATCACGGGCGCCTACGACACCATCA < 41bp 0.503594023440213 0.799256178591037 0.8590177 0.9221772 prediction 0.591324310301649 Functional Gain - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7595365 chr19:7595366 synonymous SNV . 0 22 hm5C_associated_SNPs_102260 0 0 0 0 1 chromatin 0.500231637535492 0.500231643926718 0.126319 1.27824528739495e-08 hm5C_site_55405 DeepMRMD:0.126319;iRNA_m5C:1.27824528739495e-08 55406 chr1 43805691 43805691 1 + C A OV 43805687 + 43805667 43805707 41 CCTCATCTCAGGACTCCAGCCTGGCAACTCCTACTGGCTGC CCTCATCTCAGGACTCCAGCCTGGAAACTCCTACTGGCTGC < 41bp 0.608306584686439 0.903936652584278 0.39765334 0.55305797 prediction 0.591260135795677 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43805687 chr1:43805691 synonymous SNV . 0 25 hm5C_associated_SNPs_102261 0 0 0 0 1 Nucleus 0.500231641372828 0.500231643883339 0.10611594 5.02102204258392e-09 hm5C_site_55406 DeepMRMD:0.10611594;iRNA_m5C:5.02102204258392e-09 55407 chr15 78385042 78385042 1 + C A CESC 78385038 + 78385018 78385058 41 TGAAGTGGTTCATGGAGACACAGGCCCCCTTCATTCTGCAG TGAAGTGGTTCATGGAGACACAGGACCCCTTCATTCTGCAG < 41bp 0.593213934121909 0.888835312946247 0.15488666 0.15318334 prediction 0.591242757648676 Functional Gain - SH2D7 ENSG00000183476 CDS Human protein_coding chr15:78385038 chr15:78385042 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_102262 0 0 0 0 1 unknown 0.500231643921092 0.500231643921082 0 0 hm5C_site_55407 DeepMRMD:0;iRNA_m5C:0 55408 chr19 33182882 33182882 1 + C A rs374445377 33182878 + 33182858 33182898 41 CTGCGCGCCATGAGCAGCTCCCTGCGGCCGGGCCCCAGCCG CTGCGCGCCATGAGCAGCTCCCTGAGGCCGGGCCCCAGCCG < 41bp 0.45360785007512 0.795595448912199 0.21497437 0.40243053 prediction 0.591190897824398 Functional Gain - NUDT19 ENSG00000213965 CDS Human protein_coding chr19:33182878 chr19:33182882 synonymous SNV . 0 25 hm5C_associated_SNPs_102263 0 0 1 0 0 Ribosome 0.500231648319244 0.500231644660813 0 0 hm5C_site_55408 DeepMRMD:0;iRNA_m5C:0 55409 chr19 16438013 16438013 1 + C A rs15336 16438009 + 16437989 16438029 41 CGACGACGACGCCACCACCCCAGCCCCCGTCTGTGACTGAA CGACGACGACGCCACCACCCCAGCACCCGTCTGTGACTGAA < 41bp 0.439814579614033 0.795594728964721 0.46749827 0.3853479 prediction 0.591189457929443 Functional Gain - KLF2 ENSG00000127528 UTR3 Human protein_coding chr19:16438009 chr19:16438013 . . 0 25 hm5C_associated_SNPs_102264 0 0 0 0 0 Endoplasmic reticulum 0.500231643979091 0.500233905712975 0 4.52346776813606e-06 hm5C_site_55409 DeepMRMD:0;iRNA_m5C:4.52346776813606e-06 Blood protein levels 55410 chr11 112084574 112084574 1 + C A OV 112084570 + 112084550 112084590 41 CTTCAGCCAGTGCTGTGAAACAGGCTGATGGAACGGTATGC CTTCAGCCAGTGCTGTGAAACAGGATGATGGAACGGTATGC < 41bp 0.591027046765542 0.886615108145337 0.8638379 0.8368094 prediction 0.591176122759591 Functional Gain - BCO2 ENSG00000197580 CDS Human protein_coding chr11:112084570 chr11:112084574 nonsynonymous SNV 0.838 1 25 hm5C_associated_SNPs_102265 0 0 0 0 1 nucleus 0.500231643921068 0.500231643920985 0 0 hm5C_site_55410 DeepMRMD:0;iRNA_m5C:0 55411 chr19 54140017 54140017 1 + C A rs138559564 54140013 + 54139993 54140033 41 ATTGCCCAACGCTGCTCACCCGATCGGCCTGGTGTACACGG ATTGCCCAACGCTGCTCACCCGATAGGCCTGGTGTACACGG < 41bp 0.592259587605409 0.887828086287755 0.084014654 0.13394573 prediction 0.591136997364691 Functional Gain - DPRX ENSG00000204595 CDS Human protein_coding chr19:54140013 chr19:54140017 synonymous SNV . 0 25 hm5C_associated_SNPs_102266 0 0 0 0 0 exosome 0.500231643936127 0.500231643928643 0 0 hm5C_site_55411 DeepMRMD:0;iRNA_m5C:0 55412 chr14 24676617 24676617 1 + C A UCEC 24676613 + 24676593 24676633 41 ATCCTTTACACTCTAGTGGTCGCCCATCTGCCCTTTGATGA ATCCTTTACACTCTAGTGGTCGCCAATCTGCCCTTTGATGA < 41bp 0.387452211696313 0.795567585456993 0.004764229 0.050801873 prediction 0.591135170913987 Functional Gain - TSSK4 ENSG00000139908 CDS Human protein_coding chr14:24676613 chr14:24676617 nonsynonymous SNV 0.154 1 25 hm5C_associated_SNPs_102267 0 0 0 0 1 nucleus 0.500231643921538 0.500231642583972 0 0 hm5C_site_55412 DeepMRMD:0;iRNA_m5C:0 55413 chr17 48917193 48917193 1 + C A LUSC 48917189 + 48917169 48917209 41 ACCTGCCGCTATCACTTCACCTGGCCCAACACCAGCCCCCC ACCTGCCGCTATCACTTCACCTGGACCAACACCAGCCCCCC < 41bp 0.60791471026348 0.903468366694739 0.4744895 0.40291446 prediction 0.591107312862519 Functional Gain - WFIKKN2 ENSG00000173714 CDS Human protein_coding chr17:48917189 chr17:48917193 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_102268 0 0 0 0 0 exosome 0.500231643916447 0.500231643899421 0 0 hm5C_site_55413 DeepMRMD:0;iRNA_m5C:0 55414 chr14 70924319 70924319 1 + C A SKCM 70924315 + 70924295 70924335 41 GGCTACTGTCAGGCTGGGCCCTCCCAGCATTTCACTTCCCC GGCTACTGTCAGGCTGGGCCCTCCAAGCATTTCACTTCCCC < 41bp 0.396221499811344 0.795540267718646 0.17092052 0.9438155 prediction 0.591080535437292 Functional Gain - ADAM21 ENSG00000139985 CDS Human protein_coding chr14:70924315 chr14:70924319 nonsynonymous SNV 0.015 0 25 hm5C_associated_SNPs_102269 0 0 0 0 0 exosome 0.500231643921092 0.50023164463729 0.887631 1.43239486938285e-09 hm5C_site_55414 DeepMRMD:0.887631;iRNA_m5C:1.43239486938285e-09 55415 chr11 64803081 64803081 1 + C G rs201383470 64803080 + 64803060 64803100 41 GAGGCATCTGGTTCCCCTGCCCGAGGCCCCCTCACCGAGGC GAGGCATCTGGTTCCCCTGCCGGAGGCCCCCTCACCGAGGC < 41bp 0.523151389620246 0.818657261889207 0.50178057 0.8934783 prediction 0.591011744537922 Functional Gain - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64803080 chr11:64803081 nonsynonymous SNV 0.099 1 22 hm5C_associated_SNPs_102270 0 0 0 0 2 Ribosome 0.500231643921572 0.500231643921092 0.78339546 0 hm5C_site_55415 DeepMRMD:0.78339546;iRNA_m5C:0 55416 chr1 156902332 156902332 1 + C G rs537758017 156902331 + 156902311 156902351 41 GTGGGGCTGCTGTGGCTGTCCCTGGCTGTGAGTCCCTTTCA GTGGGGCTGCTGTGGCTGTCCGTGGCTGTGAGTCCCTTTCA < 41bp 0.512758960256939 0.80825497306393 0.083874315 0.1787385 prediction 0.590992025613982 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156902331 chr1:156902332 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_102271 0 0 0 0 1 exosome 0.500231643997104 0.500231803018951 0 3.18043693825487e-07 hm5C_site_55416 DeepMRMD:0;iRNA_m5C:3.18043693825487e-07 55417 chr11 6413102 6413102 1 + C A rs35933246 6413098 + 6413078 6413118 41 CCTGTTGAGTGGGCTGGGCCCAGCCGGCCCTTTTGATATGG CCTGTTGAGTGGGCTGGGCCCAGCAGGCCCTTTTGATATGG < 41bp 0.598571888756481 0.894055015744688 0.15250126 0.2572506 prediction 0.590966253976414 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6413098 chr11:6413102 synonymous SNV . 0 25 hm5C_associated_SNPs_102272 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921094 0 3.5527136788005e-15 hm5C_site_55417 DeepMRMD:0;iRNA_m5C:3.5527136788005e-15 55418 chr20 25203612 25203612 1 + T A rs140279087 25203608 + 25203588 25203628 41 ACCTTGCAGCTGGTGTGGGCCTCATAGGTAAGGGGGCCCGG ACCTTGCAGCTGGTGTGGGCCTCAAAGGTAAGGGGGCCCGG < 41bp 0.502724732907953 0.798207343186743 0.385623 0.39287335 prediction 0.59096522055758 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25203608 chr20:25203612 nonsynonymous SNV 0.933 4 25 hm5C_associated_SNPs_102273 0 0 1 0 1 Endoplasmic reticulum 0.50023164392325 0.500231643921092 0 0 hm5C_site_55418 DeepMRMD:0;iRNA_m5C:0 55419 chr16 31308898 31308898 1 + C A GBM 31308894 + 31308874 31308914 41 GTGGACAGCAACGGCAGCACCGACCTGGTCCTCATCGGGGC GTGGACAGCAACGGCAGCACCGACATGGTCCTCATCGGGGC < 41bp 0.611602069786316 0.907082231976281 0.040228814 0.021999449 prediction 0.59096032437993 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31308894 chr16:31308898 nonsynonymous SNV 0.112 3 25 hm5C_associated_SNPs_102274 0 0 0 0 1 Endoplasmic reticulum 0.500231627083199 0.500231645413017 0 3.66596353273962e-08 hm5C_site_55419 DeepMRMD:0;iRNA_m5C:3.66596353273962e-08 55420 chr18 580481 580481 1 + C A SARC 580477 + 580457 580497 41 AGAAAGGTGGCACCTAAGCCCGAGCTCACTGAGGATCAGAA AGAAAGGTGGCACCTAAGCCCGAGATCACTGAGGATCAGAA < 41bp 0.585536964870481 0.881008899267943 0.41498366 0.5955711 prediction 0.590943868794924 Functional Gain - CETN1 ENSG00000177143 CDS Human protein_coding chr18:580477 chr18:580481 nonsynonymous SNV 0.720 1 25 hm5C_associated_SNPs_102275 0 0 0 0 0 unknown 0.500231643918835 0.500231643921092 0.1911422 4.51572113036036e-12 hm5C_site_55420 DeepMRMD:0.1911422;iRNA_m5C:4.51572113036036e-12 55421 chr9 102609889 102609889 1 + T G LUAD 102609887 + 102609867 102609907 41 GCCTGCCTGTCAGCACTGAGCATGATCACAGGTAAGCACCA GCCTGCCTGTCAGCACTGAGCAGGATCACAGGTAAGCACCA < 41bp 0.556274071027603 0.851700150003181 0.05635962 0.67332447 prediction 0.590852157951157 Functional Gain - NR4A3 ENSG00000119508 CDS Human protein_coding chr9:102609887 chr9:102609889 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_102276 0 0 0 0 1 Cytosol 0.500232916071677 0.500292782096148 0.34664894 0.000119732048941001 hm5C_site_55421 DeepMRMD:0.34664894;iRNA_m5C:0.000119732048941001 55422 chr12 52282534 52282534 1 + C A LUAD 52282530 + 52282510 52282550 41 GCCTGTGTCCACAATGATCCCACCCAGCTCCAAGCCATACT GCCTGTGTCCACAATGATCCCACCAAGCTCCAAGCCATACT < 41bp 0.381436916520787 0.795413125127282 0.00608781 0.070750296 prediction 0.590826250254564 Functional Gain - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52282530 chr12:52282534 nonsynonymous SNV 0.309 0 25 hm5C_associated_SNPs_102277 0 0 0 0 0 unknown 0.500231643921108 0.500231652958202 0 1.80741881461444e-08 hm5C_site_55422 DeepMRMD:0;iRNA_m5C:1.80741881461444e-08 55423 chr6 161139758 161139758 1 + C A OV 161139754 + 161139734 161139774 41 TGAAAACTACTGCCGCAATCCTGACGGAAAAAGGGCCCCAT TGAAAACTACTGCCGCAATCCTGAAGGAAAAAGGGCCCCAT < 41bp 0.381102222478694 0.795396882926387 0.22793746 0.20948184 prediction 0.590793765852775 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161139754 chr6:161139758 nonsynonymous SNV 0.756 1 25 hm5C_associated_SNPs_102278 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55423 DeepMRMD:0;iRNA_m5C:0 55424 chr18 43405725 43405725 1 + T G rs139939061 43405723 + 43405703 43405743 41 TCCATCTGGCTGCTGGCCTGCTTGGCGTGGGTTCTCCCGAC TCCATCTGGCTGCTGGCCTGCTGGGCGTGGGTTCTCCCGAC < 41bp 0.46888732161695 0.795394075976053 0.32588077 0.83073056 prediction 0.590788151952105 Functional Gain - SIGLEC15 ENSG00000197046 CDS Human protein_coding chr18:43405723 chr18:43405725 nonsynonymous SNV 0.594 2 23 hm5C_associated_SNPs_102279 0 0 0 0 1 exosome 0.500231643036175 0.500229169531745 0.66146112 0 hm5C_site_55424 DeepMRMD:0.66146112;iRNA_m5C:0 55425 chr15 40661237 40661237 1 + C A LUSC 40661233 + 40661213 40661253 41 TGCTGGGCCTGGCTTTGGCGCTGGCCTTTGCCACACTGCTC TGCTGGGCCTGGCTTTGGCGCTGGACTTTGCCACACTGCTC < 41bp 0.419807818703166 0.795389930886155 0.22496349 0.33613986 prediction 0.59077986177231 Functional Gain - DISP2 ENSG00000140323 CDS Human protein_coding chr15:40661233 chr15:40661237 nonsynonymous SNV 0.983 2 25 hm5C_associated_SNPs_102280 0 0 0 0 0 nucleus 0.500231643921093 0.500231643921082 0 0 hm5C_site_55425 DeepMRMD:0;iRNA_m5C:0 55426 chr9 90497878 90497878 1 + C G STAD 90497877 + 90497857 90497897 41 GAGTGGGCAGAGGATTCCACCCCCAGCTCCCAGACCATCTG GAGTGGGCAGAGGATTCCACCGCCAGCTCCCAGACCATCTG < 41bp 0.504146486503549 0.799527791606685 0.13834104 0.61542785 prediction 0.590762610206271 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90497877 chr9:90497878 synonymous SNV . 0 22 hm5C_associated_SNPs_102281 0 0 0 0 1 exosome 0.500231643921091 0.500231643903752 0.2308557 0 hm5C_site_55426 DeepMRMD:0.2308557;iRNA_m5C:0 55427 chr8 11566352 11566352 1 + C A rs573733348 11566348 + 11566328 11566368 41 GGGCGCGTCCTGGGCCGCAGCCGCCGCCGCCTCCGCCGGCC GGGCGCGTCCTGGGCCGCAGCCGCAGCCGCCTCCGCCGGCC < 41bp 0.59172726678775 0.887092930526829 0.42675537 0.5069436 prediction 0.590731327478156 Functional Gain - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11566348 chr8:11566352 synonymous SNV . 0 25 hm5C_associated_SNPs_102282 1 0 0 0 0 cytosol 0.500231643921095 0.500231643921085 0.0138872000000001 0 hm5C_site_55427 DeepMRMD:0.0138872000000001;iRNA_m5C:0 Atrioventricular septal defect 4 Atrioventricular septal defect 4 55428 chr11 1887806 1887806 1 + T A rs7938342 1887802 + 1887782 1887822 41 GGGCCCCTGGCTGGGCACACCTCATCCCAGCCTCCCCCTAC GGGCCCCTGGCTGGGCACACCTCAACCCAGCCTCCCCCTAC < 41bp 0.502436085936941 0.797799818269658 0.16256562 0.20426327 prediction 0.590727464665434 Functional Gain - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1887802 chr11:1887806 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102283 0 1 0 0 0 exosome 0.500231643921092 0.500231643921093 0 6.66133814775094e-16 hm5C_site_55428 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 55429 chr19 31641140 31641140 1 + T G rs530240940 31641137 + 31641117 31641157 41 TGCTGACTGCCTCCTCCATGCTCTGAAGTCAGCCCGTGAGG TGCTGACTGCCTCCTCCATGCTCGGAAGTCAGCCCGTGAGG < 41bp 0.561613469319107 0.856974447326017 0.043811888 0.41594934 prediction 0.59072195601382 Functional Gain - ZNF536;LINC01791 ENSG00000268953 downstream Human other chr19:31641137 chr19:31641140 . . 0 24 hm5C_associated_SNPs_102284 0 0 0 0 0 unknown 0.500231643921798 0.500231647493707 0 7.14381842570333e-09 hm5C_site_55429 DeepMRMD:0;iRNA_m5C:7.14381842570333e-09 55430 chr16 1392790 1392790 1 + T A LUAD 1392786 + 1392766 1392806 41 ACCTGCTGCTGCTCAGCCATCTGCTGCGGTTGGAGCACTCA ACCTGCTGCTGCTCAGCCATCTGCAGCGGTTGGAGCACTCA < 41bp 0.480370472726677 0.795357735957964 0.41522172 0.41038564 prediction 0.590715471915928 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392786 chr16:1392790 nonsynonymous SNV 0.644 2 25 hm5C_associated_SNPs_102285 0 0 0 0 2 chromatin 0.500231624356621 0.500231612088872 0 0 hm5C_site_55430 DeepMRMD:0;iRNA_m5C:0 55431 chr18 32455254 32455254 1 + C A LUAD 32455250 + 32455230 32455270 41 TCCCCCAGCCACACCATCAGCAGGCCAATTCCCATGCCCAT TCCCCCAGCCACACCATCAGCAGGACAATTCCCATGCCCAT < 41bp 0.535611382770274 0.830964655992734 0.9213624 0.9201155 prediction 0.59070654644492 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32455250 chr18:32455254 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_102286 0 0 0 0 1 cytosol 0.500231643889756 0.500231643921093 0 6.26725338292999e-11 hm5C_site_55431 DeepMRMD:0;iRNA_m5C:6.26725338292999e-11 55432 chr10 89264374 89264374 1 + C A rs183634732 89264370 + 89264350 89264390 41 TTGAGTCAATCCCTGAAGCTCCGGCTAAGAGGAAACTCGCC TTGAGTCAATCCCTGAAGCTCCGGATAAGAGGAAACTCGCC < 41bp 0.449859127961355 0.795347399859566 0.8079355 0.87024826 prediction 0.590694799719131 Functional Gain - MINPP1 ENSG00000107789 upstream Human protein_coding chr10:89264370 chr10:89264374 . . 0 25 hm5C_associated_SNPs_102287 0 0 0 0 0 Ribosome 0.500231643921129 0.500231643921301 0.12462552 3.44391182238724e-13 hm5C_site_55432 DeepMRMD:0.12462552;iRNA_m5C:3.44391182238724e-13 55433 chr16 22926316 22926316 1 + C A LUAD 22926312 + 22926292 22926332 41 CCAGATCACGCTGGAGAAGACGCCCAGCTACTTTGTCACTC CCAGATCACGCTGGAGAAGACGCCAAGCTACTTTGTCACTC < 41bp 0.612776386014402 0.908114289747633 0.27141255 0.7406411 prediction 0.590675807466461 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22926312 chr16:22926316 synonymous SNV . 0 25 hm5C_associated_SNPs_102288 0 0 0 1 1 exosome 0.500231642807277 0.50023172801783 0.4812822 1.70421107670293e-07 hm5C_site_55433 DeepMRMD:0.4812822;iRNA_m5C:1.70421107670293e-07 55434 chr1 151079598 151079598 1 + C G KIRC 151079597 + 151079577 151079617 41 TGGAGGCCAGAGGGTCATCACCATAGTGACTGATGGAGTCC TGGAGGCCAGAGGGTCATCACGATAGTGACTGATGGAGTCC < 41bp 0.513089832603178 0.808420385865803 0.25585184 0.3615239 prediction 0.59066110652525 Functional Gain - GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151079597 chr1:151079598 synonymous SNV . 0 22 hm5C_associated_SNPs_102289 0 0 1 0 1 chromatin 0.500231643924927 0.500231647653288 0 7.45672146251763e-09 hm5C_site_55434 DeepMRMD:0;iRNA_m5C:7.45672146251763e-09 55435 chr2 79255031 79255031 1 + C A LUAD 79255027 + 79255007 79255047 41 TCCCTCCACCATCTTAAACCCTGGCCACTGTGGGAGCCTGT TCCCTCCACCATCTTAAACCCTGGACACTGTGGGAGCCTGT < 41bp 0.398493098561036 0.795322938442722 0.14566109 0.32980245 prediction 0.590645876885444 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255027 chr2:79255031 synonymous SNV . 0 25 hm5C_associated_SNPs_102290 0 0 0 0 2 unknown 0.500231643921093 0.500231643921093 0 6.66133814775094e-16 hm5C_site_55435 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 55436 chr17 48619249 48619249 1 + C A rs4794159 48619245 + 48619225 48619265 41 ACCAACCCGTTCGGCGCGGGCGAGCCGGGCAGGCCGACGCT ACCAACCCGTTCGGCGCGGGCGAGACGGGCAGGCCGACGCT < 41bp 0.592007907455401 0.88732530930262 0.76780117 0.8842444 prediction 0.590634803694438 Functional Gain - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48619245 chr17:48619249 nonsynonymous SNV 0.790 1 25 hm5C_associated_SNPs_102291 0 0 0 0 1 Nucleus 0.500231643472416 0.500231617276788 0.23288646 0 hm5C_site_55436 DeepMRMD:0.23288646;iRNA_m5C:0 55437 chr19 55317439 55317439 1 + C A rs200485159 55317435 + 55317415 55317455 41 AGAAACCTTCGCTTACAGCCCGGCCGGGCCCCACGGTTCGC AGAAACCTTCGCTTACAGCCCGGCAGGGCCCCACGGTTCGC < 41bp 0.406865068752552 0.795296033961355 0.33147675 0.3672982 prediction 0.59059206792271 Functional Gain - KIR2DL4 ENSG00000189013 CDS Human protein_coding chr19:55317435 chr19:55317439 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_102292 0 0 0 0 0 exosome 0.500231643923091 0.500231643921092 0 0 hm5C_site_55437 DeepMRMD:0;iRNA_m5C:0 55438 chr6 109762289 109762289 1 + G T rs200126871 109762293 - 109762273 109762313 41 TCCAGGGGCGCTAGGCGGCTCGAACTCTCCAGCGACGGCCG TCCAGGGGCGCTAGGCGGCTCGAAATCTCCAGCGACGGCCG < 41bp 0.555967503695224 0.851252848056834 0.013403177 0.072925895 prediction 0.590570688723221 Functional Gain - PPIL6;SMPD2 ENSG00000135587;ENSG00000185250 UTR5 Human other chr6:109762293 chr6:109762289 . . 0 25 hm5C_associated_SNPs_102293 0 0 0 0 0 unknown 0.500231638236264 0.500231233946776 0 0 hm5C_site_55438 DeepMRMD:0;iRNA_m5C:0 55439 chr2 219825610 219825610 1 + C A LUAD 219825606 + 219825586 219825626 41 GGCCGCCAGGGACAGCTGCGCGGCCGGAACCAAGCACTGGA GGCCGCCAGGGACAGCTGCGCGGCAGGAACCAAGCACTGGA < 41bp 0.581844479101209 0.877127552846164 0.8985778 0.8962985 prediction 0.590566147489911 Functional Gain - CDK5R2 ENSG00000171450 CDS Human protein_coding chr2:219825606 chr2:219825610 synonymous SNV . 0 25 hm5C_associated_SNPs_102294 0 0 0 0 0 Cytosol 0.500231643932159 0.500231643920932 0 0 hm5C_site_55439 DeepMRMD:0;iRNA_m5C:0 55440 chr1 12837627 12837627 1 + C A UCEC 12837623 + 12837603 12837643 41 AGACACTGAGGGACTTAAGGCAGCCCAAGATTATTGTGTTC AGACACTGAGGGACTTAAGGCAGCACAAGATTATTGTGTTC < 41bp 0.412918110062463 0.795282904341972 0.2959469 0.30855888 prediction 0.590565808683945 Functional Gain - PRAMEF12 ENSG00000116726 CDS Human protein_coding chr1:12837623 chr1:12837627 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_102295 0 0 0 0 0 unknown 0.500231643922107 0.500231662104053 0 3.63638910094721e-08 hm5C_site_55440 DeepMRMD:0;iRNA_m5C:3.63638910094721e-08 55441 chr14 24839463 24839463 1 + C A LUAD 24839459 + 24839439 24839479 41 TCAGCCTCCCCAGCTCTGTCCCGCCGTGGCAGCCTGGGGGA TCAGCCTCCCCAGCTCTGTCCCGCAGTGGCAGCCTGGGGGA < 41bp 0.450586097239126 0.795281509420559 0.588458 0.7394971 prediction 0.590563018841117 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24839459 chr14:24839463 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_102296 0 0 0 0 0 cytosol 0.500231643965273 0.4998636969788 0.3020782 0 hm5C_site_55441 DeepMRMD:0.3020782;iRNA_m5C:0 55442 chr19 41597751 41597751 1 + C A rs8192789 41597747 + 41597727 41597767 41 GCCAAGAAGGTGGAGCACAACCAGCGCACGCTGGATCCCAA GCCAAGAAGGTGGAGCACAACCAGAGCACGCTGGATCCCAA < 41bp 0.398338453054551 0.795262026110867 0.25276795 0.26063657 prediction 0.590524052221734 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41597747 chr19:41597751 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_102297 0 0 0 0 1 unknown 0.500228495223976 0.50023164334038 0 6.2962328073457e-06 hm5C_site_55442 DeepMRMD:0;iRNA_m5C:6.2962328073457e-06 55443 chr19 3179921 3179921 1 + C A KIRC 3179917 + 3179897 3179937 41 TCGGATGCGGGAGCCCCTGTCCAGCATCTCCAGCGTGCGGA TCGGATGCGGGAGCCCCTGTCCAGAATCTCCAGCGTGCGGA < 41bp 0.437815183736445 0.795247784807064 0.22518745 0.35403913 prediction 0.590495569614129 Functional Gain - S1PR4 ENSG00000125910 CDS Human protein_coding chr19:3179917 chr19:3179921 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_102298 0 0 0 0 0 exosome 0.500231643992328 0.500231643933242 0 0 hm5C_site_55443 DeepMRMD:0;iRNA_m5C:0 55444 chr5 140580728 140580728 1 + C G ESCA 140580727 + 140580707 140580747 41 ACCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCCCGC ACCTCCTACACCCTGTTCGTCGGCGAGAACAACAGCCCCGC < 41bp 0.504473757834932 0.799720723589054 0.096053064 0.51286733 prediction 0.590493931508245 Functional Gain - PCDHB11 ENSG00000197479 CDS Human protein_coding chr5:140580727 chr5:140580728 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_102299 0 0 0 0 0 Nucleus 0.50023164392109 0.500231643921092 0.0257346599999999 5.32907051820075e-15 hm5C_site_55444 DeepMRMD:0.0257346599999999;iRNA_m5C:5.32907051820075e-15 55445 chr19 36034606 36034606 1 + T A LUSC 36034602 + 36034582 36034622 41 GGCGTTCCGGGTACCAACCCCGGATGTGTCTGTCGTGGACC GGCGTTCCGGGTACCAACCCCGGAAGTGTCTGTCGTGGACC < 41bp 0.510303634821108 0.80553977086463 0.8914649 0.8832594 prediction 0.590472272087044 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36034602 chr19:36034606 nonsynonymous SNV 0.860 3 25 hm5C_associated_SNPs_102300 0 0 0 0 1 chromatin 0.500231643831189 0.500231643921092 0 1.79806169953167e-10 hm5C_site_55445 DeepMRMD:0;iRNA_m5C:1.79806169953167e-10 55446 chr12 21669040 21669040 1 + T G rs184561186 21669037 + 21669017 21669057 41 CTTTTTAGAAATGTCCACTGCAATGGCAAAAATATTTCCAG CTTTTTAGAAATGTCCACTGCAAGGGCAAAAATATTTCCAG < 41bp 0.442056925397028 0.795221170476329 0.25890124 0.55149245 prediction 0.590442340952659 Functional Gain - GOLT1B ENSG00000111711 UTR3 Human protein_coding chr12:21669037 chr12:21669040 . . 0 24 hm5C_associated_SNPs_102301 0 0 1 3 0 Ribosome 0.500231643158008 0.500231643977586 0.1029849 1.63915436779405e-09 hm5C_site_55446 DeepMRMD:0.1029849;iRNA_m5C:1.63915436779405e-09 55447 chr4 15446011 15446011 1 + C A rs13104095 15446007 + 15445987 15446027 41 CTTGGGGAGGGCGGAAACATCACACACAAGGTTTCCACTTC CTTGGGGAGGGCGGAAACATCACAAACAAGGTTTCCACTTC < 41bp 0.561648641681305 0.856844448867068 0.022779137 0.09547013 prediction 0.590391614371524 Functional Gain - C1QTNF7 ENSG00000163145 UTR3 Human protein_coding chr4:15446007 chr4:15446011 . . 0 25 hm5C_associated_SNPs_102302 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_55447 DeepMRMD:0;iRNA_m5C:0 55448 chrX 18912471 18912471 1 + G C LGG 18912472 - 18912452 18912492 41 CATGTCGAATCGGTGCTGAACCGCGTGCCGCAGCCCGAGTA CATGTCGAATCGGTGCTGAACGGCGTGCCGCAGCCCGAGTA < 41bp 0.491728610701965 0.795182116643684 0.3006197 0.8894352 prediction 0.590364233287367 Functional Gain - PHKA2 ENSG00000044446 CDS Human protein_coding chrX:18912472 chrX:18912471 nonsynonymous SNV 0.948 2 22 hm5C_associated_SNPs_102303 0 0 1 0 1 Cytosol 0.500231643921613 0.50023164394221 0.7788704 4.11934930610869e-11 hm5C_site_55448 DeepMRMD:0.7788704;iRNA_m5C:4.11934930610869e-11 55449 chr5 79817879 79817879 1 + C A UCEC 79817875 + 79817855 79817895 41 ATATATGTAATGAACTAAGTCAGCCTGTAACGTTCCCTGTC ATATATGTAATGAACTAAGTCAGCATGTAACGTTCCCTGTC < 41bp 0.394016978475963 0.79517901361219 0.39094973 0.5576993 prediction 0.59035802722438 Functional Gain - FAM151B ENSG00000152380 CDS Human protein_coding chr5:79817875 chr5:79817879 nonsynonymous SNV 0.150 3 25 hm5C_associated_SNPs_102304 0 0 0 0 1 exosome 0.500231645385964 0.500231643917127 0.1153986 0 hm5C_site_55449 DeepMRMD:0.1153986;iRNA_m5C:0 55450 chr1 111773540 111773540 1 + C A LIHC 111773536 + 111773516 111773556 41 GACAAGAGTGAAGTGATGCTCTACCAGACCATCAACAGTCT GACAAGAGTGAAGTGATGCTCTACAAGACCATCAACAGTCT < 41bp 0.387206359191814 0.795165309812452 0.044825584 0.7536908 prediction 0.590330619624904 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111773536 chr1:111773540 nonsynonymous SNV 0.237 0 25 hm5C_associated_SNPs_102305 0 0 0 0 1 exosome 0.500231644744159 0.500231643924513 0.5073816 0 hm5C_site_55450 DeepMRMD:0.5073816;iRNA_m5C:0 55451 chr8 27373874 27373874 1 + C A HNSC 27373870 + 27373850 27373890 41 CCCAGGCAGGTTACCGGGTCCTAGCTATGGACATGAAAGGC CCCAGGCAGGTTACCGGGTCCTAGATATGGACATGAAAGGC < 41bp 0.379760373754009 0.795162198879494 0.07115698 0.1934909 prediction 0.590324397758987 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27373870 chr8:27373874 nonsynonymous SNV 0.800 4 25 hm5C_associated_SNPs_102306 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_55451 DeepMRMD:0;iRNA_m5C:0 55452 chr17 73269698 73269698 1 + A C rs148372053 73269700 - 73269680 73269720 41 GTACGGAGATACAAGGGCCTCATGGACTGTGCCAAGCAGGT GTACGGAGATACAAGGGCCTCAGGGACTGTGCCAAGCAGGT < 41bp 0.470098953889661 0.795152769106593 0.18944469 0.77610147 prediction 0.590305538213187 Functional Gain - SLC25A19 ENSG00000125454 CDS Human protein_coding chr17:73269700 chr17:73269698 nonsynonymous SNV 0.003 0 23 hm5C_associated_SNPs_102307 2 0 0 0 1 Ribosome 0.500231643362499 0.500231643873469 0.55220294 1.02194075424222e-09 hm5C_site_55452 DeepMRMD:0.55220294;iRNA_m5C:1.02194075424222e-09 Amish lethal microcephaly Amish lethal microcephaly 55453 chr9 84533280 84533280 1 + C A KICH 84533276 + 84533256 84533296 41 GTCTGGACAACTGAGGATGGCAGACAGACTTTTCTGCCCCC GTCTGGACAACTGAGGATGGCAGAAAGACTTTTCTGCCCCC < 41bp 0.539990116894662 0.835118585849908 0.2438403 0.31719643 prediction 0.590256937910492 Functional Gain - SPATA31D5P ENSG00000240632 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:84533276 chr9:84533280 . . 0 25 hm5C_associated_SNPs_102308 0 0 0 1 0 unknown 0.500231643921093 0.500231643921092 0 0 hm5C_site_55453 DeepMRMD:0;iRNA_m5C:0 55454 chr6 20402550 20402550 1 + T G COAD 20402547 + 20402527 20402567 41 GCGGCTGTCGTCGCCGCCGCCGCTGCAGCCTCCATGGACAA GCGGCTGTCGTCGCCGCCGCCGCGGCAGCCTCCATGGACAA < 41bp 0.578162062011569 0.873260927472136 0.23341131 0.85448384 prediction 0.590197730921134 Functional Gain - E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402547 chr6:20402550 synonymous SNV . 0 24 hm5C_associated_SNPs_102309 0 0 1 0 0 Cytosol 0.500231644400998 0.500231644023265 0.70896768 0 hm5C_site_55454 DeepMRMD:0.70896768;iRNA_m5C:0 55455 chr8 53852828 53852828 1 + T A STAD 53852824 + 53852804 53852844 41 GTGGCTATCGACCAGTACAACACCTTCTCCAGCCTCTACTT GTGGCTATCGACCAGTACAACACCATCTCCAGCCTCTACTT < 41bp 0.50044585533622 0.795541288006774 0.014416605 0.009806842 prediction 0.590190865341107 Functional Gain - NPBWR1 ENSG00000183729 CDS Human protein_coding chr8:53852824 chr8:53852828 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_102310 0 0 0 0 0 exosome 0.500258054355478 0.50119785023464 0 0.00187959175832475 hm5C_site_55455 DeepMRMD:0;iRNA_m5C:0.00187959175832475 55456 chr10 26789841 26789841 1 + C A STAD 26789837 + 26789817 26789857 41 AGGCTGAGCAGAGGACAATCCAGGCACAGAAAGAGTCCTTG AGGCTGAGCAGAGGACAATCCAGGAACAGAAAGAGTCCTTG < 41bp 0.608480489404448 0.903567636783331 0.5006851 0.5386269 prediction 0.590174294757766 Functional Gain - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26789837 chr10:26789841 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_102311 0 0 0 0 0 nucleus 0.500231641640107 0.500231643921092 0.0758836000000001 4.56197035703099e-09 hm5C_site_55456 DeepMRMD:0.0758836000000001;iRNA_m5C:4.56197035703099e-09 55457 chr15 58834025 58834025 1 + C G LUAD 58834024 + 58834004 58834044 41 CTGGATCTGGCAGATGGTGGCCGCGCTGAAGTCTCAGCCGG CTGGATCTGGCAGATGGTGGCGGCGCTGAAGTCTCAGCCGG < 41bp 0.508856801175071 0.803928034703095 0.21732354 0.86214125 prediction 0.590142467056048 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834024 chr15:58834025 synonymous SNV . 0 22 hm5C_associated_SNPs_102312 0 0 1 0 1 Endoplasmic reticulum 0.500231643921637 0.500231643921091 0.7242825 0 hm5C_site_55457 DeepMRMD:0.7242825;iRNA_m5C:0 55458 chr6 36260856 36260856 1 + T A LUSC 36260852 + 36260832 36260872 41 GCACAGGCCCTATACTGCAGCTGCTTCGTCCCGGTGTACTG GCACAGGCCCTATACTGCAGCTGCATCGTCCCGGTGTACTG < 41bp 0.473694091260734 0.795065978226133 0.018309683 0.026088536 prediction 0.590131956452267 Functional Gain - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36260852 chr6:36260856 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_102313 0 0 0 0 2 exosome 0.500231795672804 0.500231745519797 0 0 hm5C_site_55458 DeepMRMD:0;iRNA_m5C:0 55459 chr4 178243650 178243650 1 + T G UCEC 178243648 + 178243628 178243668 41 AATGATTCCAGCCAGAATGTCTTGAGCCTGTTTAATGGATA AATGATTCCAGCCAGAATGTCTGGAGCCTGTTTAATGGATA < 41bp 0.484761540789082 0.795058779037897 0.02703622 0.16577443 prediction 0.590117558075794 Functional Gain - NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178243648 chr4:178243650 nonsynonymous SNV 0.086 1 23 hm5C_associated_SNPs_102314 0 0 1 0 2 chromatin 0.500910093831402 0.500429111748025 0 0 hm5C_site_55459 DeepMRMD:0;iRNA_m5C:0 55460 chr4 71255517 71255517 1 + C A COAD 71255513 + 71255493 71255533 41 AGGGAGAATCCCACCTCCTCCTCCCGCACCCTATGGTCCAG AGGGAGAATCCCACCTCCTCCTCCAGCACCCTATGGTCCAG < 41bp 0.606271091421338 0.901327610140923 0.14208663 0.941198 prediction 0.590113037439171 Functional Gain - SMR3B ENSG00000171201 CDS Human protein_coding chr4:71255513 chr4:71255517 synonymous SNV . 0 25 hm5C_associated_SNPs_102315 0 0 0 0 0 unknown 0.50023164392109 0.500231643921092 0.882396 5.77315972805081e-15 hm5C_site_55460 DeepMRMD:0.882396;iRNA_m5C:5.77315972805081e-15 55461 chrX 99854696 99854696 1 + C A LUSC 99854692 + 99854672 99854712 41 GCCTTGTAACTGGTGGGTGGCCCGCATGCTGGGGAGGGTCT GCCTTGTAACTGGTGGGTGGCCCGAATGCTGGGGAGGGTCT < 41bp 0.470737057662975 0.795040822116583 0.26569405 0.2849803 prediction 0.590081644233167 Functional Gain - TNMD ENSG00000000005 CDS Human protein_coding chrX:99854692 chrX:99854696 synonymous SNV . 0 25 hm5C_associated_SNPs_102316 0 0 0 0 0 exosome 0.500231643921093 0.500231643921093 0 0 hm5C_site_55461 DeepMRMD:0;iRNA_m5C:0 55462 chr7 20778656 20778656 1 + T A LUAD 20778652 + 20778632 20778672 41 CTATGGCCATCGGAGAAACGCTCGTTTTGGCTCCTGAATAT CTATGGCCATCGGAGAAACGCTCGATTTGGCTCCTGAATAT < 41bp 0.531610476080493 0.826649681908704 0.10675302 0.3456874 prediction 0.590078411656421 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20778652 chr7:20778656 nonsynonymous SNV 0.608 1 25 hm5C_associated_SNPs_102317 0 0 0 0 0 exosome 0.500231644398182 0.50023164403854 0 0 hm5C_site_55462 DeepMRMD:0;iRNA_m5C:0 55463 chr1 247769217 247769217 1 + T G rs61750030 247769214 + 247769194 247769234 41 ATTTCTCTGGCACTGGGCTCCACTGAATGTATCCTCTTGGC ATTTCTCTGGCACTGGGCTCCACGGAATGTATCCTCTTGGC < 41bp 0.587905236862288 0.882941880289855 0.27801853 0.49425215 prediction 0.590073286855135 Functional Gain - OR2G3 ENSG00000177476 CDS Human protein_coding chr1:247769214 chr1:247769217 synonymous SNV . 0 24 hm5C_associated_SNPs_102318 0 0 0 0 0 unknown 0.500371192830334 0.500231643921093 0 0 hm5C_site_55463 DeepMRMD:0;iRNA_m5C:0 55464 chr19 38817296 38817296 1 + T A HNSC 38817292 + 38817272 38817312 41 CCTTCTCCATCGCCTTTGCGCTCCTGGGCGTGCCGACCACC CCTTCTCCATCGCCTTTGCGCTCCAGGGCGTGCCGACCACC < 41bp 0.551096756929671 0.846115116481862 0.2410655 0.5949798 prediction 0.590036719104382 Functional Gain - KCNK6 ENSG00000099337 CDS Human protein_coding chr19:38817292 chr19:38817296 nonsynonymous SNV 0.874 3 25 hm5C_associated_SNPs_102319 0 0 0 0 1 Ribosome 0.500231643920808 0.500231643921181 0.1899596 7.45625783338255e-13 hm5C_site_55464 DeepMRMD:0.1899596;iRNA_m5C:7.45625783338255e-13 55465 chr3 183353478 183353478 1 + C A rs2271977 183353474 + 183353454 183353494 41 CGCTGGAGAGTGCGCTGCGCCGCCCGCCGCTGAGGGACCGC CGCTGGAGAGTGCGCTGCGCCGCCAGCCGCTGAGGGACCGC < 41bp 0.578415788500754 0.873412825384464 0.042930335 0.27451074 prediction 0.589994073767419 Functional Gain - KLHL24 ENSG00000114796 UTR5 Human protein_coding chr3:183353474 chr3:183353478 . . 0 25 hm5C_associated_SNPs_102320 0 0 1 0 0 Ribosome 0.50023163768286 0.500232165325685 0 1.05528564886548e-06 hm5C_site_55465 DeepMRMD:0;iRNA_m5C:1.05528564886548e-06 55466 chrX 130215772 130215772 1 + C G HNSC 130215771 + 130215751 130215791 41 GCCCCAGGACACAACCCCGACCGCAGGACGAAGATGGTATC GCCCCAGGACACAACCCCGACGGCAGGACGAAGATGGTATC < 41bp 0.510464465196582 0.805444805076977 0.21293363 0.329055 prediction 0.589960679760791 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130215771 chrX:130215772 nonsynonymous SNV 0.008 1 22 hm5C_associated_SNPs_102321 0 0 0 0 1 unknown 0.500231643921037 0.500231643921488 0 9.01945185205477e-13 hm5C_site_55466 DeepMRMD:0;iRNA_m5C:9.01945185205477e-13 55467 chr2 232458647 232458647 1 + C A LIHC 232458643 + 232458623 232458663 41 CTGCACAGCTCGGGGCCCAGCTTGCGCTCGGTCCCCAGCCT CTGCACAGCTCGGGGCCCAGCTTGAGCTCGGTCCCCAGCCT < 41bp 0.595847617873945 0.890825150496072 0.19865721 0.23370144 prediction 0.589955065244255 Functional Gain - TEX44 ENSG00000177673 CDS Human protein_coding chr2:232458643 chr2:232458647 nonsynonymous SNV 0.097 2 25 hm5C_associated_SNPs_102322 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0 0 hm5C_site_55467 DeepMRMD:0;iRNA_m5C:0 55468 chr8 11414277 11414277 1 + C A LUSC 11414273 + 11414253 11414293 41 GTGATGAAGGCTCTGCAGCACGAGCGGCTGGTCCGACTCTA GTGATGAAGGCTCTGCAGCACGAGAGGCTGGTCCGACTCTA < 41bp 0.60577987717466 0.900736308736497 0.66047055 0.90188396 prediction 0.589912863123674 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11414273 chr8:11414277 synonymous SNV . 0 25 hm5C_associated_SNPs_102323 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.48282682 0 hm5C_site_55468 DeepMRMD:0.48282682;iRNA_m5C:0 55469 chr8 36768513 36768513 1 + C A UCEC 36768509 + 36768489 36768529 41 AGAGCAATGCTCCATGTGTGCTGTCTTGTCCCCCCCACCCC AGAGCAATGCTCCATGTGTGCTGTATTGTCCCCCCCACCCC < 41bp 0.392599777816869 0.794954168729887 0.017974645 0.018695444 prediction 0.589908337459774 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36768509 chr8:36768513 synonymous SNV . 0 25 hm5C_associated_SNPs_102324 0 0 0 0 1 unknown 0.500231648935271 0.500231643921074 0 0 hm5C_site_55469 DeepMRMD:0;iRNA_m5C:0 55470 chr8 12888698 12888698 1 + T G rs566105576 12888695 + 12888675 12888715 41 CCACGGATATTGAGGGACCACAGTATTTTTATCCTCCATGT CCACGGATATTGAGGGACCACAGGATTTTTATCCTCCATGT < 41bp 0.574726471072531 0.86966632613466 0.5130384 0.9246076 prediction 0.589879710124258 Functional Gain - KIAA1456;DLC1 ENSG00000250305 CDS Human protein_coding chr8:12888695 chr8:12888698 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_102325 0 0 0 0 1 unknown 0.500231643921091 0.500231644086835 0.8231384 3.31487948201925e-10 hm5C_site_55470 DeepMRMD:0.8231384;iRNA_m5C:3.31487948201925e-10 55471 chrX 90691684 90691684 1 + C A LUAD 90691680 + 90691660 90691700 41 AATGGCCGCATAGTGGGCTCCAAGCCCCTGCATGTCACCCT AATGGCCGCATAGTGGGCTCCAAGACCCTGCATGTCACCCT < 41bp 0.58586099745014 0.880781502435716 0.08910808 0.15597507 prediction 0.589841009971152 Functional Gain - PABPC5 ENSG00000174740 CDS Human protein_coding chrX:90691680 chrX:90691684 nonsynonymous SNV 0.963 3 25 hm5C_associated_SNPs_102326 0 0 0 0 0 exosome 0.500231643920645 0.500231643903239 0 0 hm5C_site_55471 DeepMRMD:0;iRNA_m5C:0 55472 chr13 88328566 88328566 1 + C A LUAD 88328562 + 88328542 88328582 41 TGAGCACCACGGGGTATTTACACACCACCCCGGCGTCAGTG TGAGCACCACGGGGTATTTACACAACACCCCGGCGTCAGTG < 41bp 0.395784613798996 0.794904706748933 0.14309886 0.21120194 prediction 0.589809413497866 Functional Gain - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88328562 chr13:88328566 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_102327 0 0 1 0 0 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_55472 DeepMRMD:0;iRNA_m5C:0 55473 chr22 24658472 24658472 1 + G T UCEC 24658476 - 24658456 24658496 41 GACATGAACGCCATCGCAGGCACGCTGAAGCTGTACTTCCG GACATGAACGCCATCGCAGGCACGATGAAGCTGTACTTCCG < 41bp 0.55904365567248 0.85392430031946 0.45567787 0.3825317 prediction 0.589761289293962 Functional Gain - POM121L9P ENSG00000128262;ENSG00000225098 ncRNA_exonic Human other chr22:24658476 chr22:24658472 . . 0 25 hm5C_associated_SNPs_102328 0 0 0 0 0 unknown 0.5002318451903 0.500232917428504 0 2.14447640778381e-06 hm5C_site_55473 DeepMRMD:0;iRNA_m5C:2.14447640778381e-06 55474 chr4 48027169 48027169 1 + T A BRCA 48027165 + 48027145 48027185 41 TGTCACAGCTGCTGGCTTCTCCTGTGCTCTACACGGACCTG TGTCACAGCTGCTGGCTTCTCCTGAGCTCTACACGGACCTG < 41bp 0.505639016002248 0.800516467203785 0.22798455 0.40466517 prediction 0.589754902403073 Functional Gain - NIPAL1 ENSG00000163293 CDS Human protein_coding chr4:48027165 chr4:48027169 nonsynonymous SNV 0.315 0 25 hm5C_associated_SNPs_102329 0 0 1 0 1 Ribosome 0.500231644282348 0.500231643930948 0 0 hm5C_site_55474 DeepMRMD:0;iRNA_m5C:0 55475 chr21 46066935 46066935 1 + C A LUAD 46066931 + 46066911 46066951 41 GCACCTCCTCCTCCTACCAGCAGGCCTGCTGCGTGCCTGTC GCACCTCCTCCTCCTACCAGCAGGACTGCTGCGTGCCTGTC < 41bp 0.580711844661627 0.875586393593204 0.87314045 0.8944833 prediction 0.589749097863153 Functional Gain - KRTAP10-11 ENSG00000243489 CDS Human protein_coding chr21:46066931 chr21:46066935 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_102330 0 0 0 0 0 unknown 0.500231643921093 0.500231643921164 0.0426857 1.40554234917545e-13 hm5C_site_55475 DeepMRMD:0.0426857;iRNA_m5C:1.40554234917545e-13 55476 chr11 60557889 60557889 1 + C G LUAD 60557888 + 60557868 60557908 41 AGTCCTCAGCCCAGTCCAGCCCTGGCAGACAAGTGCACCCC AGTCCTCAGCCCAGTCCAGCCGTGGCAGACAAGTGCACCCC < 41bp 0.512105850603941 0.806957094775341 0.02798459 0.16084313 prediction 0.589702488342802 Functional Gain - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60557888 chr11:60557889 synonymous SNV . 0 22 hm5C_associated_SNPs_102331 0 0 0 0 0 Nucleus 0.500231643211795 0.500231643895974 0 1.3683585375901e-09 hm5C_site_55476 DeepMRMD:0;iRNA_m5C:1.3683585375901e-09 55477 chr17 41180641 41180641 1 + C G rs199859128 41180640 + 41180620 41180660 41 CAGCTGTCAGGACGGCCAGACCGGGGGAATGAGGGCGAGAT CAGCTGTCAGGACGGCCAGACGGGGGGAATGAGGGCGAGAT < 41bp 0.497324062949348 0.794819148238111 0.91299003 0.91712236 prediction 0.589638296476222 Functional Gain - RND2 ENSG00000108830 CDS Human protein_coding chr17:41180640 chr17:41180641 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_102332 0 0 1 0 0 Nucleus 0.500231649547275 0.500231643519142 0.00826466000000003 0 hm5C_site_55477 DeepMRMD:0.00826466000000003;iRNA_m5C:0 55478 chr2 109150866 109150866 1 + C A rs375814245 109150862 + 109150842 109150882 41 GCGGCCCGCCTCGCCTTCCCCCCCCTCCCGCGCCCCCGCGC GCGGCCCGCCTCGCCTTCCCCCCCATCCCGCGCCCCCGCGC < 41bp 0.563237691178399 0.858053401008896 0.16095877 0.1531209 prediction 0.589631419660993 Functional Gain - LIMS1 ENSG00000169756 UTR5 Human protein_coding chr2:109150862 chr2:109150866 . . 0 25 hm5C_associated_SNPs_102333 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_55478 DeepMRMD:0;iRNA_m5C:0 55479 chr17 34951458 34951458 1 + T A rs143529065 34951454 + 34951434 34951474 41 CCCGGGACTTTGATCCCCTACAGATGTGACCTATCAAATGA CCCGGGACTTTGATCCCCTACAGAAGTGACCTATCAAATGA < 41bp 0.527342893068843 0.822141478593742 0.18554175 0.22429463 prediction 0.589597171049799 Functional Gain - DHRS11 ENSG00000108272 CDS Human other chr17:34951454 chr17:34951458 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_102334 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_55479 DeepMRMD:0;iRNA_m5C:0 55480 chr16 71660256 71660256 1 + C A rs373036309 71660252 + 71660232 71660272 41 CCGCGGGACCGACCCGGGGACCCGCGCAGGAAGCGAAGCAG CCGCGGGACCGACCCGGGGACCCGAGCAGGAAGCGAAGCAG < 41bp 0.433313623077786 0.794773831003433 0.11746639 0.3081888 prediction 0.589547662006865 Functional Gain - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71660252 chr16:71660256 nonsynonymous SNV 0.008 1 25 hm5C_associated_SNPs_102335 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55480 DeepMRMD:0;iRNA_m5C:0 55481 chr14 20249016 20249016 1 + T A LUAD 20249012 + 20248992 20249032 41 CCCAATGAGTTAGACAGTTACTTCTGTGACATCACACAGGT CCCAATGAGTTAGACAGTTACTTCAGTGACATCACACAGGT < 41bp 0.49387624193353 0.794757403965357 0.20823926 0.26297504 prediction 0.589514807930714 Functional Gain - OR4M1 ENSG00000176299 CDS Human protein_coding chr14:20249012 chr14:20249016 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_102336 0 0 0 0 0 unknown 0.500231702193306 0.500231967528319 0 5.3067002547813e-07 hm5C_site_55481 DeepMRMD:0;iRNA_m5C:5.3067002547813e-07 55482 chr12 101880259 101880259 1 + C A PCPG 101880255 + 101880235 101880275 41 AAAAACAAAGAAAAACTTGCCGAGCTTTGGGGGAAAAGAAA AAAAACAAAGAAAAACTTGCCGAGATTTGGGGGAAAAGAAA < 41bp 0.416540402064128 0.794755854583681 0.62079847 0.89684606 prediction 0.589511709167363 Functional Gain - SPIC ENSG00000166211 CDS Human protein_coding chr12:101880255 chr12:101880259 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_102337 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.55209518 0 hm5C_site_55482 DeepMRMD:0.55209518;iRNA_m5C:0 55483 chr13 95254120 95254120 1 + C A rs372436127 95254116 + 95254096 95254136 41 CACCCCGCCTCCCCCAGCTGCCGACGTGGGGCGGGCAGCCG CACCCCGCCTCCCCCAGCTGCCGAAGTGGGGCGGGCAGCCG < 41bp 0.465024694639936 0.794751251490569 0.87102973 0.8807167 prediction 0.589502502981137 Functional Gain - GPR180 ENSG00000152749 upstream Human protein_coding chr13:95254116 chr13:95254120 . . 0 25 hm5C_associated_SNPs_102338 0 0 0 0 0 chromatin 0.500231643934097 0.500231643921092 0.0193739400000001 0 hm5C_site_55483 DeepMRMD:0.0193739400000001;iRNA_m5C:0 55484 chr11 60541401 60541401 1 + C A UCEC 60541397 + 60541377 60541417 41 TTGCCATGCACTTCGGGTGCCAAGCCATCCATGCCCAGGCC TTGCCATGCACTTCGGGTGCCAAGACATCCATGCCCAGGCC < 41bp 0.405262157644316 0.794742910112568 0.100985646 0.2962336 prediction 0.589485820225136 Functional Gain - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60541397 chr11:60541401 nonsynonymous SNV 0.284 0 25 hm5C_associated_SNPs_102339 0 0 0 0 2 unknown 0.500231653553038 0.500231906049642 0 5.04993207695037e-07 hm5C_site_55484 DeepMRMD:0;iRNA_m5C:5.04993207695037e-07 55485 chr2 231742247 231742247 1 + C A OV 231742243 + 231742223 231742263 41 GGGAAAGACACCTACCGGCTCCGGCGCCGGGCAACGCGGAG GGGAAAGACACCTACCGGCTCCGGAGCCGGGCAACGCGGAG < 41bp 0.407014026871941 0.79472878349228 0.3704199 0.56316656 prediction 0.58945756698456 Functional Gain - ITM2C ENSG00000135916 CDS Human protein_coding chr2:231742243 chr2:231742247 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_102340 0 0 1 0 1 Ribosome 0.500231624594252 0.500231642685222 0.12633312 3.61819396665908e-08 hm5C_site_55485 DeepMRMD:0.12633312;iRNA_m5C:3.61819396665908e-08 55486 chr11 55339966 55339966 1 + T G STAD 55339963 + 55339943 55339983 41 ATCCTCACGGCTGTTGACCGCTATGTGGACATCTGTAAGCC ATCCTCACGGCTGTTGACCGCTAGGTGGACATCTGTAAGCC < 41bp 0.591803549767748 0.886519330895299 0.10865685 0.48136494 prediction 0.589431562255101 Functional Gain - OR4C16 ENSG00000181935 CDS Human other chr11:55339963 chr11:55339966 stopgain 0.966 1 24 hm5C_associated_SNPs_102341 0 0 0 0 0 unknown 0.500252076419765 0.500223626134303 0 0 hm5C_site_55486 DeepMRMD:0;iRNA_m5C:0 55487 chr4 74702791 74702791 1 + C A GBM 74702787 + 74702767 74702807 41 CTGCAGGTGTTCCCCGCAGGCCCGCAGTGCTCCAAGGTGGA CTGCAGGTGTTCCCCGCAGGCCCGAAGTGCTCCAAGGTGGA < 41bp 0.393986533669753 0.79468465583761 0.06963536 0.1044898 prediction 0.589369311675221 Functional Gain - CXCL6 ENSG00000124875 CDS Human protein_coding chr4:74702787 chr4:74702791 nonsynonymous SNV 0.187 1 25 hm5C_associated_SNPs_102342 0 0 0 0 1 exosome 0.500231643921351 0.500231612114234 0 0 hm5C_site_55487 DeepMRMD:0;iRNA_m5C:0 55488 chr7 56128554 56128554 1 + T A COAD 56128550 + 56128530 56128570 41 AAGTGGCAATGGCAGAAGCCCTGATTAAACATAAGCCCAGT AAGTGGCAATGGCAGAAGCCCTGAATAAACATAAGCCCAGT < 41bp 0.533834513156247 0.828504223158284 0.019334316 0.027995974 prediction 0.589339420004075 Functional Gain - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56128550 chr7:56128554 nonsynonymous SNV 0.952 0 25 hm5C_associated_SNPs_102343 0 0 1 0 2 Ribosome 0.500231643742602 0.500231643921092 0 3.56980001114948e-10 hm5C_site_55488 DeepMRMD:0;iRNA_m5C:3.56980001114948e-10 55489 chr12 66716532 66716532 1 + T A UCEC 66716528 + 66716508 66716548 41 GACTGTGATCTAATTAATGACTGCTGCTGCAAACACTACAC GACTGTGATCTAATTAATGACTGCAGCTGCAAACACTACAC < 41bp 0.520263268567499 0.814904962863289 0.12302905 0.14585745 prediction 0.589283388591581 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66716528 chr12:66716532 nonsynonymous SNV 0.932 4 25 hm5C_associated_SNPs_102344 0 0 0 7 2 nucleus 0.500231636444413 0.500231501608711 0 0 hm5C_site_55489 DeepMRMD:0;iRNA_m5C:0 55490 chr10 135126477 135126477 1 + C A rs75714358 135126473 + 135126453 135126493 41 GCCGCCCTGGGGGCCAGGCCCTCGCCATCCTCCCCATCCTT GCCGCCCTGGGGGCCAGGCCCTCGACATCCTCCCCATCCTT < 41bp 0.557969384323333 0.852600166478658 0.26088142 0.84259284 prediction 0.589261564310651 Functional Gain - ZNF511 ENSG00000198546 UTR3 Human protein_coding chr10:135126473 chr10:135126477 . . 0 25 hm5C_associated_SNPs_102345 0 0 1 0 0 Ribosome 0.500231643921036 0.500231643921064 0.68518568 5.57331958361829e-14 hm5C_site_55490 DeepMRMD:0.68518568;iRNA_m5C:5.57331958361829e-14 55491 chr3 158362484 158362484 1 + C A UCEC 158362480 + 158362460 158362500 41 GGGCGCGGAAGGGCCCCCGCCTCCCTAGGCTGGCAGAGGAA GGGCGCGGAAGGGCCCCCGCCTCCATAGGCTGGCAGAGGAA < 41bp 0.592516518015124 0.887118888383048 0.76323664 0.9727376 prediction 0.589204740735848 Functional Gain - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158362480 chr3:158362484 nonsynonymous SNV 0.045 0 25 hm5C_associated_SNPs_102346 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0.41900192 0 hm5C_site_55491 DeepMRMD:0.41900192;iRNA_m5C:0 55492 chr3 149531005 149531005 1 + T G rs187925985 149531003 + 149530983 149531023 41 GGGGCGGGACTTCCGCTTCGCCTAGGTGTTGTCGTCCCTGC GGGGCGGGACTTCCGCTTCGCCGAGGTGTTGTCGTCCCTGC < 41bp 0.503898157532491 0.798488272678787 0.06098014 0.769415 prediction 0.589180230292593 Functional Gain - RNF13 ENSG00000082996 UTR5 Human protein_coding chr3:149531003 chr3:149531005 . . 0 23 hm5C_associated_SNPs_102347 0 0 1 0 0 Endoplasmic reticulum 0.500231643920955 0.500230648334215 0.53883 0 hm5C_site_55492 DeepMRMD:0.53883;iRNA_m5C:0 55493 chr12 132401557 132401557 1 + C A rs142271947 132401553 + 132401533 132401573 41 TTAAGGCGGCGTTTGGGACACAAGCCCCGGACCCGGGCAGC TTAAGGCGGCGTTTGGGACACAAGACCCGGACCCGGGCAGC < 41bp 0.405054279829717 0.794571179550706 0.2427313 0.5483687 prediction 0.589142359101411 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132401553 chr12:132401557 nonsynonymous SNV 0.025 0 25 hm5C_associated_SNPs_102348 0 0 1 0 2 Cytosol 0.500231643921091 0.50023164392109 0.0967374000000001 0 hm5C_site_55493 DeepMRMD:0.0967374000000001;iRNA_m5C:0 55494 chr3 98002358 98002358 1 + C A COAD 98002354 + 98002334 98002374 41 TCTAATGGTTTTTATTTTGTCTGGCTCAATTCAGGTATTCA TCTAATGGTTTTTATTTTGTCTGGATCAATTCAGGTATTCA < 41bp 0.443890059347984 0.794513528530872 0.24480522 0.25312895 prediction 0.589027057061743 Functional Gain - OR5H2 ENSG00000197938 CDS Human protein_coding chr3:98002354 chr3:98002358 synonymous SNV . 0 25 hm5C_associated_SNPs_102349 0 0 0 0 0 unknown 0.500231646148344 0.500231643925144 0 0 hm5C_site_55494 DeepMRMD:0;iRNA_m5C:0 55495 chr7 2402315 2402315 1 + C A LUSC 2402311 + 2402291 2402331 41 TGGAGTACGCGTCCCCTGCCCACGCTGTGGATGCTGTGAAG TGGAGTACGCGTCCCCTGCCCACGATGTGGATGCTGTGAAG < 41bp 0.615287901716724 0.909786467122745 0.19724762 0.14485288 prediction 0.588997130812042 Functional Gain - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2402311 chr7:2402315 nonsynonymous SNV 0.043 4 25 hm5C_associated_SNPs_102350 0 0 1 0 2 Ribosome 0.50023161428641 0.500231333588588 0 0 hm5C_site_55495 DeepMRMD:0;iRNA_m5C:0 55496 chr6 54002429 54002429 1 + T G SARC 54002427 + 54002407 54002447 41 GCTAGTAGCAGCCTTGCTTCCATGAATGTAGAGAGAACACC GCTAGTAGCAGCCTTGCTTCCAGGAATGTAGAGAGAACACC < 41bp 0.553199315427777 0.847696670669475 0.19106752 0.38074076 prediction 0.588994710483397 Functional Gain - MLIP ENSG00000146147 CDS Human protein_coding chr6:54002427 chr6:54002429 nonsynonymous SNV 0.009 0 23 hm5C_associated_SNPs_102351 0 0 0 0 0 Cytosol 0.500231644282398 0.500231730455609 0 1.72346423354952e-07 hm5C_site_55496 DeepMRMD:0;iRNA_m5C:1.72346423354952e-07 55497 chr1 248551674 248551674 1 + C A BLCA 248551670 + 248551650 248551690 41 GGTGACATTGTTCTATGGGGCTGCCTTGTATACGTATACGC GGTGACATTGTTCTATGGGGCTGCATTGTATACGTATACGC < 41bp 0.421835819662499 0.794492594033659 0.089784324 0.083084315 prediction 0.588985188067317 Functional Gain - OR2T6 ENSG00000198104 CDS Human protein_coding chr1:248551670 chr1:248551674 synonymous SNV . 0 25 hm5C_associated_SNPs_102352 0 0 0 0 0 unknown 0.500231643955225 0.500231643921061 0 0 hm5C_site_55497 DeepMRMD:0;iRNA_m5C:0 55498 chr10 89419516 89419516 1 + T G rs550560880 89419514 + 89419494 89419534 41 GTCCCCAAGGCTGGGCGCTGCTTGCGGAACCGACGGGGCGG GTCCCCAAGGCTGGGCGCTGCTGGCGGAACCGACGGGGCGG < 41bp 0.482547913664871 0.794486651792535 0.31809944 0.63622934 prediction 0.588973303585071 Functional Gain - PAPSS2 ENSG00000196566 ncRNA_intronic Human antisense chr10:89419514 chr10:89419516 . . 0 23 hm5C_associated_SNPs_102353 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.27245868 0 hm5C_site_55498 DeepMRMD:0.27245868;iRNA_m5C:0 55499 chr5 44809402 44809402 1 + T G MESO 44809400 + 44809380 44809420 41 TACCAGTACTTCACCAAGACCGTGTTCCTGTCGGGTCTGCC TACCAGTACTTCACCAAGACCGGGTTCCTGTCGGGTCTGCC < 41bp 0.460673235286936 0.794483729734115 0.16837421 0.54461753 prediction 0.588967459468231 Functional Gain - MRPS30 ENSG00000112996 CDS Human protein_coding chr5:44809400 chr5:44809402 nonsynonymous SNV 0.816 1 23 hm5C_associated_SNPs_102354 0 0 1 0 0 Ribosome 0.50023164364797 0.500231798759571 0.08923506 3.10223202681925e-07 hm5C_site_55499 DeepMRMD:0.08923506;iRNA_m5C:3.10223202681925e-07 55500 chr15 23811161 23811161 1 + T G COAD 23811159 + 23811139 23811179 41 AGGCCTGAGGCCTGCCCCAGCCTCAGGAGGAGGAGCCTGGC AGGCCTGAGGCCTGCCCCAGCCGCAGGAGGAGGAGCCTGGC < 41bp 0.547895695994032 0.842367605568559 0.04119742 0.3382593 prediction 0.588943819149053 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811159 chr15:23811161 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_102355 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_55500 DeepMRMD:0;iRNA_m5C:0 55501 chr18 77289043 77289043 1 + C A rs7228808 77289039 + 77289019 77289059 41 CGTCGCTGATGGAGAAAGGGCTCCCGCAGAAGGAACGGCCT CGTCGCTGATGGAGAAAGGGCTCCAGCAGAAGGAACGGCCT < 41bp 0.452551328704567 0.794468265326851 0.2033712 0.5848906 prediction 0.588936530653702 Functional Gain - NFATC1 ENSG00000131196 UTR3 Human protein_coding chr18:77289039 chr18:77289043 . . 0 25 hm5C_associated_SNPs_102356 0 0 1 0 0 Cytosol 0.500231643921093 0.500231643905168 0.1697812 0 hm5C_site_55501 DeepMRMD:0.1697812;iRNA_m5C:0 55502 chr22 23505467 23505467 1 + C A rs4552283 23505463 + 23505443 23505483 41 TGGAGTCTCTGTCACCCAGGCTGGCGTGCAATGGCACGATC TGGAGTCTCTGTCACCCAGGCTGGAGTGCAATGGCACGATC < 41bp 0.462284478014897 0.794467678579096 0.34215122 0.33917776 prediction 0.588935357158193 Functional Gain - RAB36 ENSG00000100228 UTR3 Human protein_coding chr22:23505463 chr22:23505467 . . 0 25 hm5C_associated_SNPs_102357 0 0 0 0 0 Nucleus 0.500231645993438 0.500231643915032 0 0 hm5C_site_55502 DeepMRMD:0;iRNA_m5C:0 55503 chr1 86959196 86959196 1 + T G LUSC 86959193 + 86959173 86959213 41 TGCAGCCTCCCCAAATCCTTCTCTGGGATCCCAGTGGACAG TGCAGCCTCCCCAAATCCTTCTCGGGGATCCCAGTGGACAG < 41bp 0.420703916266725 0.794454738789207 0.09719923 0.044934988 prediction 0.588909477578414 Functional Gain - CLCA1 ENSG00000016490 CDS Human protein_coding chr1:86959193 chr1:86959196 nonsynonymous SNV 0.916 0 24 hm5C_associated_SNPs_102358 0 0 0 0 1 exosome 0.500231643924882 0.500231643921067 0 0 hm5C_site_55503 DeepMRMD:0;iRNA_m5C:0 55504 chr14 23236556 23236556 1 + T G LAML 23236553 + 23236533 23236573 41 GCTGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGC GCTGCTGTCGCCCACACTACCTCGTCCTTGCGGCTTCCGGC < 41bp 0.406253400885512 0.794421213457372 0.0870789 0.14899367 prediction 0.588842426914745 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23236553 chr14:23236556 nonsynonymous SNV 0.007 0 24 hm5C_associated_SNPs_102359 0 0 1 9 2 Cytosol 0.500231643922151 0.500231643921096 0 0 hm5C_site_55504 DeepMRMD:0;iRNA_m5C:0 55505 chr7 102004723 102004723 1 + C A rs803062 102004719 + 102004699 102004739 41 CTGGATTTGCCCCGTAGGCCCGGCCCGGGCCCCTCGGGAGC CTGGATTTGCCCCGTAGGCCCGGCACGGGCCCCTCGGGAGC < 41bp 0.481185952997637 0.794410989422243 0.20016727 0.34663835 prediction 0.588821978844486 Functional Gain - LOC100630923 ENSG00000239969 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:102004719 chr7:102004723 . . 0 25 hm5C_associated_SNPs_102360 0 0 1 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_55505 DeepMRMD:0;iRNA_m5C:0 55506 chr1 206225110 206225110 1 + C A LUSC 206225106 + 206225086 206225126 41 ACGGCCTGCTACAGCCTCATCTGCCATGAGATCTGTAAAAA ACGGCCTGCTACAGCCTCATCTGCAATGAGATCTGTAAAAA < 41bp 0.378438515159094 0.794407290216106 0.07778373 0.19390884 prediction 0.588814580432212 Functional Gain - AVPR1B ENSG00000198049 CDS Human protein_coding chr1:206225106 chr1:206225110 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_102361 0 0 0 0 0 unknown 0.500231643909314 0.500231643921093 0 2.35571562257064e-11 hm5C_site_55506 DeepMRMD:0;iRNA_m5C:2.35571562257064e-11 55507 chr10 68687810 68687810 1 + C A HNSC 68687806 + 68687786 68687826 41 TGGCCAGGGCTCTCCCAAAGCCGACGTTTAAGCCCAAGCTC TGGCCAGGGCTCTCCCAAAGCCGAAGTTTAAGCCCAAGCTC < 41bp 0.404818589359627 0.794400034319109 0.13551375 0.25967896 prediction 0.588800068638219 Functional Gain - LRRTM3 ENSG00000198739 CDS Human protein_coding chr10:68687806 chr10:68687810 nonsynonymous SNV 0.939 1 25 hm5C_associated_SNPs_102362 0 0 0 0 0 unknown 0.50023164600283 0.500231643921092 0 0 hm5C_site_55507 DeepMRMD:0;iRNA_m5C:0 55508 chrX 135570598 135570598 1 + C A LUAD 135570594 + 135570574 135570614 41 GTGCCAGTGGATGCAACTCACTACCTTGCAGAAGGATGGCT GTGCCAGTGGATGCAACTCACTACATTGCAGAAGGATGGCT < 41bp 0.389788346148979 0.794399440364382 0.1090855 0.9189545 prediction 0.588798880728764 Functional Gain - BRS3 ENSG00000102239 CDS Human protein_coding chrX:135570594 chrX:135570598 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_102363 0 0 0 0 0 unknown 0.500231643921092 0.500231643882272 0.837909 0 hm5C_site_55508 DeepMRMD:0.837909;iRNA_m5C:0 55509 chr19 55919938 55919938 1 + T G rs7250012 55919936 + 55919916 55919956 41 GCTTGGACAGCCTTGCACTCCGTGTGTGACCCCCACTCCTG GCTTGGACAGCCTTGCACTCCGGGTGTGACCCCCACTCCTG < 41bp 0.526803368178031 0.821199702602195 0.78491426 0.94479483 prediction 0.588792668848328 Functional Gain - UBE2S ENSG00000108106 upstream Human protein_coding chr19:55919936 chr19:55919938 . . 0 23 hm5C_associated_SNPs_102364 0 0 1 0 0 Ribosome 0.500231644233532 0.500236260197251 0.31976114 9.23192743784718e-06 hm5C_site_55509 DeepMRMD:0.31976114;iRNA_m5C:9.23192743784718e-06 55510 chr12 96356246 96356246 1 + C A UCEC 96356242 + 96356222 96356262 41 TGCCATCCTTCTGCCCACCACAGCCTACATGCTGAGGTAAG TGCCATCCTTCTGCCCACCACAGCATACATGCTGAGGTAAG < 41bp 0.390234940448774 0.794393788340227 0.40350655 0.4410223 prediction 0.588787576680455 Functional Gain - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96356242 chr12:96356246 synonymous SNV . 0 25 hm5C_associated_SNPs_102365 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921077 0 0 hm5C_site_55510 DeepMRMD:0;iRNA_m5C:0 55511 chr2 173292574 173292574 1 + C A STAD 173292570 + 173292550 173292590 41 CTGTCGGCGGGGCTCCTGTCCCGGCTCGGCGCAGCCTTCAA CTGTCGGCGGGGCTCCTGTCCCGGATCGGCGCAGCCTTCAA < 41bp 0.584842116243356 0.879228362822695 0.19649336 0.15653229 prediction 0.588772493158678 Functional Gain - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173292570 chr2:173292574 nonsynonymous SNV 0.558 1 25 hm5C_associated_SNPs_102366 0 0 1 0 0 Nucleus 0.500231647749482 0.500242398310241 0 2.15011215181082e-05 hm5C_site_55511 DeepMRMD:0;iRNA_m5C:2.15011215181082e-05 55512 chr10 134884614 134884614 1 + C A UCEC 134884610 + 134884590 134884630 41 CCCGGGGCAGATGGACGTACCGGCCCATCGAGGCCCTCATC CCCGGGGCAGATGGACGTACCGGCACATCGAGGCCCTCATC < 41bp 0.455585735964071 0.794376414018639 0.4250564 0.56488395 prediction 0.588752828037278 Functional Gain - LINC01168;ADGRA1-AS1 ENSG00000197177 CDS Human protein_coding chr10:134884610 chr10:134884614 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_102367 0 0 0 0 1 unknown 0.50023135465997 0.500231643495064 0.1297679 5.7767018812882e-07 hm5C_site_55512 DeepMRMD:0.1297679;iRNA_m5C:5.7767018812882e-07 55513 chr16 3041842 3041842 1 + T G rs145443201 3041840 + 3041820 3041860 41 GACCACGGACCCGCACTCCACATGGCCTAGGTCCAGCCTCT GACCACGGACCCGCACTCCACAGGGCCTAGGTCCAGCCTCT < 41bp 0.465248300311212 0.794320069571276 0.45296156 0.89421237 prediction 0.588640139142553 Functional Gain - LINC00514 ENSG00000262152 ncRNA_exonic Human processed_transcript chr16:3041840 chr16:3041842 . . 0 23 hm5C_associated_SNPs_102368 0 0 0 0 0 unknown 0.500231644027396 0.500231643918552 0.78842474 0 hm5C_site_55513 DeepMRMD:0.78842474;iRNA_m5C:0 55514 chr1 162467648 162467648 1 + T G rs182369911 162467646 + 162467626 162467666 41 GGCTTCCGGTGTCATGGCTGCTTGAAGTCCCGGGAGTCGGT GGCTTCCGGTGTCATGGCTGCTGGAAGTCCCGGGAGTCGGT < 41bp 0.473230443330748 0.794316624562863 0.32272342 0.79777455 prediction 0.588633249125727 Functional Gain - UHMK1 ENSG00000152332 UTR5 Human protein_coding chr1:162467646 chr1:162467648 . . 0 23 hm5C_associated_SNPs_102369 0 0 1 0 0 chromatin 0.500231642251656 0.50023164242007 0.5955491 3.36829897307211e-10 hm5C_site_55514 DeepMRMD:0.5955491;iRNA_m5C:3.36829897307211e-10 55515 chr2 98330052 98330052 1 + C A rs2276645 98330048 + 98330028 98330068 41 GGAAATAGGTTAGTTTCAGACAAGCCTGCTTGCCGGAGCTC GGAAATAGGTTAGTTTCAGACAAGACTGCTTGCCGGAGCTC < 41bp 0.447279055782535 0.794275007258524 0.21547171 0.27902263 prediction 0.588550014517049 Functional Gain - ZAP70 ENSG00000115085 UTR5 Human protein_coding chr2:98330048 chr2:98330052 . . 0 25 hm5C_associated_SNPs_102370 1 0 0 0 1 exosome 0.500231642067039 0.500231643834552 0 3.53502604966138e-09 hm5C_site_55515 DeepMRMD:0;iRNA_m5C:3.53502604966138e-09 Severe Combined Immune Deficiency Severe Combined Immune Deficiency 55516 chr1 158435886 158435886 1 + T A LUSC 158435882 + 158435862 158435902 41 TCCAACCAGCTCCATCACTTCTTCTGTGACATCTCCCCTGT TCCAACCAGCTCCATCACTTCTTCAGTGACATCTCCCCTGT < 41bp 0.477550450859163 0.794271726679081 0.17964143 0.2505892 prediction 0.588543453358163 Functional Gain - OR10K1 ENSG00000173285 CDS Human protein_coding chr1:158435882 chr1:158435886 nonsynonymous SNV 0.994 4 25 hm5C_associated_SNPs_102371 0 0 0 0 0 unknown 0.500254151515601 0.500168964502314 0 0 hm5C_site_55516 DeepMRMD:0;iRNA_m5C:0 55517 chr15 44581275 44581275 1 + C A KIRC 44581271 + 44581251 44581291 41 GCGGGCTGGCCGCCTGCCCTCTCTCGTGCTGGTGGTGCTGC GCGGGCTGGCCGCCTGCCCTCTCTAGTGCTGGTGGTGCTGC < 41bp 0.597313431808764 0.891576689735501 0.044413835 0.68539095 prediction 0.588526515853472 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44581271 chr15:44581275 synonymous SNV . 0 25 hm5C_associated_SNPs_102372 0 0 1 6 0 Ribosome 0.500231643634613 0.500231643826411 0.3707819 3.83596043818102e-10 hm5C_site_55517 DeepMRMD:0.3707819;iRNA_m5C:3.83596043818102e-10 55518 chr20 55206723 55206723 1 + C A rs138104861 55206719 + 55206699 55206739 41 GAGAACCTGGGGCTCCACGACATGCCTCACCAGATGGACGA GAGAACCTGGGGCTCCACGACATGACTCACCAGATGGACGA < 41bp 0.400999112331197 0.794256303489009 0.29321784 0.39890915 prediction 0.588512606978018 Functional Gain - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55206719 chr20:55206723 nonsynonymous SNV 0.940 1 25 hm5C_associated_SNPs_102373 0 0 1 0 1 Cytosol 0.500231643921094 0.50023164392109 0 0 hm5C_site_55518 DeepMRMD:0;iRNA_m5C:0 55519 chr12 4855336 4855336 1 + C A HNSC 4855332 + 4855312 4855352 41 GTCCTTCAATCATGGGCATCCTGGCTGCTAACAGGCACTTC GTCCTTCAATCATGGGCATCCTGGATGCTAACAGGCACTTC < 41bp 0.60772203496781 0.901968880103446 0.14746585 0.33286792 prediction 0.588493690271273 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4855332 chr12:4855336 nonsynonymous SNV 0.761 4 25 hm5C_associated_SNPs_102374 0 0 0 0 1 cytosol 0.500228834897207 0.500231644783006 0 5.6197715991857e-06 hm5C_site_55519 DeepMRMD:0;iRNA_m5C:5.6197715991857e-06 55520 chr11 67377024 67377024 1 + T G STAD 67377022 + 67377002 67377042 41 CACAAGCTGCTGGAAGGCTGCCTGGTGGGGGGCCGGGCCAT CACAAGCTGCTGGAAGGCTGCCGGGTGGGGGGCCGGGCCAT < 41bp 0.45915035319302 0.794240242983894 0.3994481 0.82823575 prediction 0.588480485967788 Functional Gain - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67377022 chr11:67377024 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_102375 0 0 1 0 1 Ribosome 0.50023164392113 0.500231643921099 0.6564715 0 hm5C_site_55520 DeepMRMD:0.6564715;iRNA_m5C:0 55521 chr11 5067989 5067989 1 + C A UCEC 5067985 + 5067965 5068005 41 TATTGATTTGGCCCTTTCTACAACCTCTGTGCCTCGCATGC TATTGATTTGGCCCTTTCTACAACATCTGTGCCTCGCATGC < 41bp 0.422694389837638 0.794238096786605 0.03831339 0.021163762 prediction 0.588476193573211 Functional Gain - OR52J3 ENSG00000205495 CDS Human protein_coding chr11:5067985 chr11:5067989 synonymous SNV . 0 25 hm5C_associated_SNPs_102376 0 0 0 0 0 unknown 0.500231643921092 0.500231643921026 0 0 hm5C_site_55521 DeepMRMD:0;iRNA_m5C:0 55522 chr6 25726735 25726735 1 + C A HNSC 25726731 + 25726711 25726751 41 AGACTTGGCGCGTGCTTTTCCTCCCTGCTTCCCTCGTCCAG AGACTTGGCGCGTGCTTTTCCTCCATGCTTCCCTCGTCCAG < 41bp 0.402894984104727 0.794237832233168 0.06667176 0.9588162 prediction 0.588475664466335 Functional Gain - HIST1H2AA ENSG00000164508 CDS Human protein_coding chr6:25726731 chr6:25726735 nonsynonymous SNV 0.013 1 25 hm5C_associated_SNPs_102377 0 0 0 0 0 unknown 0.500231643921092 0.500231643942056 0.9176324 4.19271284357592e-11 hm5C_site_55522 DeepMRMD:0.9176324;iRNA_m5C:4.19271284357592e-11 55523 chr20 43247329 43247329 1 + C A rs551104735 43247325 + 43247305 43247345 41 GTGAGCAGCCCACACAGGAACGCTCCTCTCGCGAGCGGCCC GTGAGCAGCCCACACAGGAACGCTACTCTCGCGAGCGGCCC < 41bp 0.425812011862526 0.794209685592736 0.062983245 0.04086432 prediction 0.588419371185471 Functional Gain - PKIG ENSG00000168734 UTR3 Human protein_coding chr20:43247325 chr20:43247329 . . 0 25 hm5C_associated_SNPs_102378 0 0 1 0 0 Ribosome 0.500231643920886 0.500231643921099 0 4.24771329221585e-13 hm5C_site_55523 DeepMRMD:0;iRNA_m5C:4.24771329221585e-13 55524 chr5 111496294 111496294 1 + T G rs367953743 111496292 + 111496272 111496312 41 GCCAGCACTGATCATATGCTCTTGACCCTGGTCGGGTGGGG GCCAGCACTGATCATATGCTCTGGACCCTGGTCGGGTGGGG < 41bp 0.526679082391283 0.820846311262791 0.069981635 0.19734848 prediction 0.588334457743017 Functional Gain - EPB41L4A-AS1 ENSG00000224032 ncRNA_exonic Human lincRNA chr5:111496292 chr5:111496294 . . 0 23 hm5C_associated_SNPs_102379 0 0 0 0 0 unknown 0.500231643921196 0.500231643921751 0 1.11044506923008e-12 hm5C_site_55524 DeepMRMD:0;iRNA_m5C:1.11044506923008e-12 55525 chr13 31338154 31338154 1 + T A LUSC 31338150 + 31338130 31338170 41 ATGTCCGTTGCTGGCATATTCAACTATTACCTCATCTTCTT ATGTCCGTTGCTGGCATATTCAACAATTACCTCATCTTCTT < 41bp 0.517967742308146 0.812131283940488 0.074428886 0.090694964 prediction 0.588327083264683 Functional Gain - ALOX5AP ENSG00000132965 CDS Human protein_coding chr13:31338150 chr13:31338154 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_102380 0 0 0 0 1 exosome 0.500231442245676 0.500229532515951 0 0 hm5C_site_55525 DeepMRMD:0;iRNA_m5C:0 55526 chr1 147825732 147825732 1 + C A rs55886213 147825728 + 147825708 147825748 41 GAGCACCCTGGACTCTGAATCAAGCGATCCGAGTTCAAATC GAGCACCCTGGACTCTGAATCAAGAGATCCGAGTTCAAATC < 41bp 0.483659483152007 0.794157431970625 0.9083649 0.9226173 prediction 0.588314863941251 Functional Gain - NBPF19 ENSG00000224481;ENSG00000272824 intergenic Human other chr1:147825728 chr1:147825732 . . 0 25 hm5C_associated_SNPs_102381 0 0 1 0 0 exosome 0.500232086614726 0.500231645349715 0.0285047999999999 0 hm5C_site_55526 DeepMRMD:0.0285047999999999;iRNA_m5C:0 55527 chr9 107457183 107457183 1 + C A LUSC 107457179 + 107457159 107457199 41 GACCACTATGTGGCCATCTGCAACCCACTGAGGTACTCCAT GACCACTATGTGGCCATCTGCAACACACTGAGGTACTCCAT < 41bp 0.41451715747745 0.794150282357433 0.15910673 0.12433219 prediction 0.588300564714866 Functional Gain - OR13D1 ENSG00000179055 CDS Human protein_coding chr9:107457179 chr9:107457183 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_102382 0 0 0 0 0 unknown 0.500231643921092 0.500231644103384 0 3.64583252476791e-10 hm5C_site_55527 DeepMRMD:0;iRNA_m5C:3.64583252476791e-10 55528 chr11 34937775 34937775 1 + C A LUAD 34937771 + 34937751 34937791 41 GGGCACCGGTGGCCCCGCCCCTACCTGCGCGCCGCATCTCC GGGCACCGGTGGCCCCGCCCCTACATGCGCGCCGCATCTCC < 41bp 0.585867131616776 0.880012908489385 0.032256186 0.93883336 prediction 0.588291553745219 Functional Gain - APIP ENSG00000149089 CDS Human protein_coding chr11:34937771 chr11:34937775 nonsynonymous SNV 0.178 0 25 hm5C_associated_SNPs_102383 0 0 0 0 0 Ribosome 0.500231643921092 0.500231644190413 0.87766672 5.38641797831474e-10 hm5C_site_55528 DeepMRMD:0.87766672;iRNA_m5C:5.38641797831474e-10 55529 chr9 21441163 21441163 1 + C A rs182132431 21441159 + 21441139 21441179 41 TCTGTCATTTCAAAGACTCTCACCCCTGCTATAACTATGAC TCTGTCATTTCAAAGACTCTCACCACTGCTATAACTATGAC < 41bp 0.454108693972856 0.794072404370514 0.037988096 0.09198034 prediction 0.588144808741028 Functional Gain - IFNA1 ENSG00000197919 UTR3 Human protein_coding chr9:21441159 chr9:21441163 . . 0 25 hm5C_associated_SNPs_102384 0 0 0 0 0 unknown 0.500231644025743 0.5002316373699 0 0 hm5C_site_55529 DeepMRMD:0;iRNA_m5C:0 55530 chr19 49129357 49129357 1 + T G rs151257086 49129355 + 49129335 49129375 41 TACAGCGGCTGCGCCCCAAACCTGAAGCCAGGCCCCGGGGT TACAGCGGCTGCGCCCCAAACCGGAAGCCAGGCCCCGGGGT < 41bp 0.470718824891392 0.7940626859513 0.18044445 0.810794 prediction 0.5881253719026 Functional Gain - SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49129355 chr19:49129357 synonymous SNV . 0 23 hm5C_associated_SNPs_102385 0 0 0 0 1 chromatin 0.500231643921092 0.500231636981649 0.621588 0 hm5C_site_55530 DeepMRMD:0.621588;iRNA_m5C:0 55531 chr10 13214704 13214704 1 + T G UCEC 13214702 + 13214682 13214722 41 CAACATGCTTTTCTGCGGAGCTTGATGTCCCTGCGCTACCA CAACATGCTTTTCTGCGGAGCTGGATGTCCCTGCGCTACCA < 41bp 0.550765719428131 0.8448086791274 0.13784671 0.84853065 prediction 0.58808591939854 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214702 chr10:13214704 synonymous SNV . 0 23 hm5C_associated_SNPs_102386 0 0 1 0 3 Nucleus 0.50023164392112 0.500231643922503 0.6970613 2.76578759894619e-12 hm5C_site_55531 DeepMRMD:0.6970613;iRNA_m5C:2.76578759894619e-12 55532 chr11 123810823 123810823 1 + C A LUSC 123810819 + 123810799 123810839 41 AGATTGCATTGACTATCCAGCTGCCATTCTGTGGGCCTGAC AGATTGCATTGACTATCCAGCTGCAATTCTGTGGGCCTGAC < 41bp 0.398334688539914 0.794024647518629 0.11107904 0.102683395 prediction 0.588049295037258 Functional Gain - OR4D5 ENSG00000171014 CDS Human protein_coding chr11:123810819 chr11:123810823 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102387 0 0 0 0 0 exosome 0.500230776784182 0.500232108546474 0 2.66352458422325e-06 hm5C_site_55532 DeepMRMD:0;iRNA_m5C:2.66352458422325e-06 55533 chr10 45920485 45920485 1 + C G SKCM 45920484 + 45920464 45920504 41 GGCTGCAACCCTGTGTTGATCCGGCGCTGCACAGAGCTGCC GGCTGCAACCCTGTGTTGATCGGGCGCTGCACAGAGCTGCC < 41bp 0.52515440243182 0.81916747453827 0.6527815 0.90841514 prediction 0.588026144212902 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45920484 chr10:45920485 nonsynonymous SNV 0.214 1 22 hm5C_associated_SNPs_102388 0 0 1 0 2 Cytosol 0.500231643897186 0.500231643921092 0.51126728 4.78119766000873e-11 hm5C_site_55533 DeepMRMD:0.51126728;iRNA_m5C:4.78119766000873e-11 55534 chr1 7890024 7890024 1 + T G SARC 7890022 + 7890002 7890042 41 CTGTCCACAGGATCGCCTCCCATGAAGAATCCATCCCATCC CTGTCCACAGGATCGCCTCCCAGGAAGAATCCATCCCATCC < 41bp 0.551155470179379 0.845154198028401 0.011769772 0.28971386 prediction 0.587997455698043 Functional Gain - PER3 ENSG00000049246 CDS Human protein_coding chr1:7890022 chr1:7890024 nonsynonymous SNV 0.005 0 23 hm5C_associated_SNPs_102389 0 0 0 0 0 chromatin 0.500231643921092 0.500231711049067 0 1.34255950801077e-07 hm5C_site_55534 DeepMRMD:0;iRNA_m5C:1.34255950801077e-07 55535 chr3 187088876 187088876 1 + C A BLCA 187088872 + 187088852 187088892 41 CCTGGAAGGATCCCATGACACAGCCAATTGTGAGGCATGCA CCTGGAAGGATCCCATGACACAGCAAATTGTGAGGCATGCA < 41bp 0.608620387437643 0.902613109240473 0.18169522 0.1674284 prediction 0.587985443605662 Functional Gain - RTP4 ENSG00000136514 CDS Human protein_coding chr3:187088872 chr3:187088876 synonymous SNV . 0 25 hm5C_associated_SNPs_102390 0 0 0 0 0 exosome 0.500231650042628 0.500231643921882 0 0 hm5C_site_55535 DeepMRMD:0;iRNA_m5C:0 55536 chr11 113269958 113269958 1 + C A rs548499152 113269954 + 113269934 113269974 41 TTGGCACATGGTGCTGATGCCAACCGAGTGGATGAGGATGG TTGGCACATGGTGCTGATGCCAACAGAGTGGATGAGGATGG < 41bp 0.40048995849468 0.793992580673392 0.43829075 0.4911699 prediction 0.587985161346785 Functional Gain - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113269954 chr11:113269958 synonymous SNV . 0 25 hm5C_associated_SNPs_102391 0 0 0 0 0 exosome 0.500231643921092 0.50023176824676 0 2.48651335521544e-07 hm5C_site_55536 DeepMRMD:0;iRNA_m5C:2.48651335521544e-07 55537 chr6 170169675 170169675 1 + C G LUAD 170169674 + 170169654 170169694 41 CTGAACCATCAGGAGGGTCCCCGCATAAGAGATCATTTAAG CTGAACCATCAGGAGGGTCCCGGCATAAGAGATCATTTAAG < 41bp 0.499916411074012 0.793988541981183 0.49493662 0.8716289 prediction 0.587977083962367 Functional Gain - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170169674 chr6:170169675 nonsynonymous SNV 0.501 4 22 hm5C_associated_SNPs_102392 0 0 0 0 1 chromatin 0.500231643921152 0.500231643921123 0.7432578 0 hm5C_site_55537 DeepMRMD:0.7432578;iRNA_m5C:0 55538 chrX 155239484 155239484 1 + T G UCEC 155239482 + 155239462 155239502 41 CTCCCGTGCTCTGTTCCAGACTTGGATGGGGGCCCACGGGG CTCCCGTGCTCTGTTCCAGACTGGGATGGGGGCCCACGGGG < 41bp 0.551265352287308 0.845253310141487 0.20423448 0.40649775 prediction 0.587975915708359 Functional Gain - IL9R ENSG00000124334 CDS Human protein_coding chrX:155239482 chrX:155239484 nonsynonymous SNV 0.016 4 23 hm5C_associated_SNPs_102393 0 0 0 0 1 exosome 0.500231643921093 0.500231643921252 0 3.17967874252645e-13 hm5C_site_55538 DeepMRMD:0;iRNA_m5C:3.17967874252645e-13 55539 chr16 58545785 58545785 1 + C A rs3743566 58545781 + 58545761 58545801 41 AGGGAGATTCGCTACGGATCCAGGCCATTCCTGGGTGAGCC AGGGAGATTCGCTACGGATCCAGGACATTCCTGGGTGAGCC < 41bp 0.5824952894527 0.876468128807857 0.45558304 0.7589735 prediction 0.587945678710312 Functional Gain - NDRG4 ENSG00000103034 UTR3 Human protein_coding chr16:58545781 chr16:58545785 . . 0 25 hm5C_associated_SNPs_102394 0 0 1 0 0 Exosome 0.500231643921095 0.500231643921757 0.517947 1.32294175614334e-12 hm5C_site_55539 DeepMRMD:0.517947;iRNA_m5C:1.32294175614334e-12 55540 chr9 977258 977258 1 + T G LUAD 977256 + 977236 977276 41 GCCAACGAGAGCTTGGAGAGCCTCATCCCCGACTCGCTGCG GCCAACGAGAGCTTGGAGAGCCGCATCCCCGACTCGCTGCG < 41bp 0.554626899293919 0.848599681134427 0.14527085 0.16826257 prediction 0.587945563681016 Functional Gain - DMRT3 ENSG00000064218 CDS Human protein_coding chr9:977256 chr9:977258 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_102395 0 0 1 0 0 unknown 0.500232292311993 0.50023159270464 0 0 hm5C_site_55540 DeepMRMD:0;iRNA_m5C:0 55541 chr1 101198093 101198093 1 + C A LUAD 101198089 + 101198069 101198109 41 GCTCCGAAAATCCTGTGGAGCAGGCAGCTCCCTAACGGGGA GCTCCGAAAATCCTGTGGAGCAGGAAGCTCCCTAACGGGGA < 41bp 0.591661683675523 0.885621206705202 0.41951635 0.4806063 prediction 0.587919046059357 Functional Gain - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101198089 chr1:101198093 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_102396 0 0 0 0 0 exosome 0.500231640343383 0.500231643921092 0 7.15541847995382e-09 hm5C_site_55541 DeepMRMD:0;iRNA_m5C:7.15541847995382e-09 55542 chr5 76249897 76249897 1 + C G LIHC 76249896 + 76249876 76249916 41 CCAGGGCCAGTTCACCTTCACCGCCGACCGGCCGCAGCTGC CCAGGGCCAGTTCACCTTCACGGCCGACCGGCCGCAGCTGC < 41bp 0.524932890754685 0.818867856591649 0.2728452 0.9342152 prediction 0.587869931673928 Functional Gain - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249896 chr5:76249897 synonymous SNV . 0 22 hm5C_associated_SNPs_102397 0 0 0 0 0 Cytosol 0.500231643921093 0.500231643921092 0.8684304 0 hm5C_site_55542 DeepMRMD:0.8684304;iRNA_m5C:0 55543 chr16 2578585 2578585 1 + C G COAD 2578584 + 2578564 2578604 41 AGCGCCCTGACCCACTGGGTCCCAGGTCCCAGCCCGCATGC AGCGCCCTGACCCACTGGGTCGCAGGTCCCAGCCCGCATGC < 41bp 0.508961632432825 0.802894488807274 0.056877583 0.259274 prediction 0.587865712748899 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578584 chr16:2578585 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_102398 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921086 0 0 hm5C_site_55543 DeepMRMD:0;iRNA_m5C:0 55544 chr1 183184672 183184672 1 + C A OV 183184668 + 183184648 183184688 41 GAGCCAGATGCGACCGATGTCTGCCAGGCTTCCACATGCTC GAGCCAGATGCGACCGATGTCTGCAAGGCTTCCACATGCTC < 41bp 0.372466651571161 0.793907670516432 0.076698184 0.25549865 prediction 0.587815341032864 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183184668 chr1:183184672 nonsynonymous SNV 0.989 2 25 hm5C_associated_SNPs_102399 0 0 0 0 2 exosome 0.500231644819847 0.500232027641596 0 7.65643496825064e-07 hm5C_site_55544 DeepMRMD:0;iRNA_m5C:7.65643496825064e-07 55545 chr1 246923314 246923314 1 + T A LUSC 246923310 + 246923290 246923330 41 GCATCACCTCTGTTATTAAGCTGATGTTTGCAGGACTTTTC GCATCACCTCTGTTATTAAGCTGAAGTTTGCAGGACTTTTC < 41bp 0.482928222366305 0.793906048693105 0.2699435 0.25030184 prediction 0.58781209738621 Functional Gain - SCCPDH ENSG00000143653 CDS Human protein_coding chr1:246923310 chr1:246923314 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102400 0 0 1 0 2 Ribosome 0.500231622046542 0.500231641963934 0 3.983478280567e-08 hm5C_site_55545 DeepMRMD:0;iRNA_m5C:3.983478280567e-08 55546 chr7 89791386 89791386 1 + T G UCEC 89791383 + 89791363 89791403 41 TTGACATGGAGAGAATTTCACTATATTCAGGTAAATAATAT TTGACATGGAGAGAATTTCACTAGATTCAGGTAAATAATAT < 41bp 0.457432405494213 0.793896526387912 0.32799327 0.26405212 prediction 0.587793052775823 Functional Gain - STEAP1 ENSG00000164647 CDS Human protein_coding chr7:89791383 chr7:89791386 stopgain 0.999 0 24 hm5C_associated_SNPs_102401 0 0 0 0 1 Endoplasmic reticulum 0.500231012838266 0.50023168753137 0 1.34938620832692e-06 hm5C_site_55546 DeepMRMD:0;iRNA_m5C:1.34938620832692e-06 55547 chr15 101438364 101438364 1 + C G SARC 101438363 + 101438343 101438383 41 TGGAGCTGGGGGGGAAGAACCCCTGCATCGTGTGTGCGGAC TGGAGCTGGGGGGGAAGAACCGCTGCATCGTGTGTGCGGAC < 41bp 0.510262034957272 0.804148474110011 0.30991834 0.48357496 prediction 0.58777287830548 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101438363 chr15:101438364 nonsynonymous SNV 0.707 4 22 hm5C_associated_SNPs_102402 0 0 0 0 2 Nucleus 0.500226584948608 0.500231676262799 0 1.01826283811501e-05 hm5C_site_55547 DeepMRMD:0;iRNA_m5C:1.01826283811501e-05 55548 chr12 111375074 111375074 1 + C A UCEC 111375070 + 111375050 111375090 41 CTGCCCAGCAGGGGGCGGTGCTACCTCGGCTCCGCGCAGCC CTGCCCAGCAGGGGGCGGTGCTACATCGGCTCCGCGCAGCC < 41bp 0.602289143651678 0.896173745427267 0.22334498 0.91327137 prediction 0.587769203551179 Functional Gain - LINC01405 ENSG00000185847 ncRNA_exonic Human lincRNA chr12:111375070 chr12:111375074 . . 0 25 hm5C_associated_SNPs_102403 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.82654274 0 hm5C_site_55548 DeepMRMD:0.82654274;iRNA_m5C:0 55549 chr7 1131069 1131069 1 + C A rs138061097 1131065 + 1131045 1131085 41 ACCCAGAGAGTGAGCAGCTCCACGCGGGACTGTGCACGGTG ACCCAGAGAGTGAGCAGCTCCACGAGGGACTGTGCACGGTG < 41bp 0.499448629349559 0.793877282253082 0.40921372 0.73188007 prediction 0.587754564506165 Functional Gain - GPER1 ENSG00000164850 UTR5 Human protein_coding chr7:1131065 chr7:1131069 . . 0 25 hm5C_associated_SNPs_102404 0 0 1 0 1 Cytosol 0.500231644930858 0.500231648198485 0.46376014 6.53525411564715e-09 hm5C_site_55549 DeepMRMD:0.46376014;iRNA_m5C:6.53525411564715e-09 55550 chr10 50819795 50819795 1 + C A LUAD 50819791 + 50819771 50819811 41 ATGGCCTGGCTGCCGGCCTTCGTGCCTCATGTGCTGGGCGT ATGGCCTGGCTGCCGGCCTTCGTGACTCATGTGCTGGGCGT < 41bp 0.580330671812897 0.874186158263472 0.6202612 0.75781965 prediction 0.587710972901152 Functional Gain - SLC18A3 ENSG00000187714 CDS Human protein_coding chr10:50819791 chr10:50819795 nonsynonymous SNV 0.964 3 25 hm5C_associated_SNPs_102405 0 0 0 0 0 exosome 0.500231643925895 0.500231644174934 0.2751169 4.98078911448374e-10 hm5C_site_55550 DeepMRMD:0.2751169;iRNA_m5C:4.98078911448374e-10 55551 chr5 140554081 140554081 1 + C A PRAD 140554077 + 140554057 140554097 41 GCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTCG GCGCGTGCTGGTGCTGGACGCCAAAGACAACTCGCCCTTCG < 41bp 0.42464500412459 0.793832905292854 0.019344658 0.07916686 prediction 0.587665810585708 Functional Gain - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140554077 chr5:140554081 nonsynonymous SNV 0.936 3 25 hm5C_associated_SNPs_102406 0 0 0 0 0 exosome 0.500258134173348 0.50022624165788 0 0 hm5C_site_55551 DeepMRMD:0;iRNA_m5C:0 55552 chr10 91066981 91066981 1 + T A UCEC 91066977 + 91066957 91066997 41 TGCAAAAAATTGCCAAAATGCGACTTTCTAAAAATGGAGCA TGCAAAAAATTGCCAAAATGCGACATTCTAAAAATGGAGCA < 41bp 0.49542614828994 0.793816572570181 0.25647944 0.1883558 prediction 0.587633145140362 Functional Gain - IFIT2 ENSG00000119922 CDS Human protein_coding chr10:91066977 chr10:91066981 nonsynonymous SNV 0.045 2 25 hm5C_associated_SNPs_102407 0 0 0 0 0 exosome 0.500231643921137 0.500231643924344 0 6.4144245470743e-12 hm5C_site_55552 DeepMRMD:0;iRNA_m5C:6.4144245470743e-12 55553 chr16 57736026 57736026 1 + C A OV 57736022 + 57736002 57736042 41 TGACGCGGGAGGTGTGCCCACTCACTGTGAAGCCCAAGGAG TGACGCGGGAGGTGTGCCCACTCAATGTGAAGCCCAAGGAG < 41bp 0.376427381909685 0.793806845757513 0.19017982 0.60455805 prediction 0.587613691515025 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57736022 chr16:57736026 nonsynonymous SNV 0.755 2 25 hm5C_associated_SNPs_102408 0 0 0 0 1 cytosol 0.500231643921093 0.500231643921092 0.2091161 0 hm5C_site_55553 DeepMRMD:0.2091161;iRNA_m5C:0 55554 chr10 73115866 73115866 1 + C G LUSC 73115865 + 73115845 73115885 41 CATGGGCGGGACGGTCAGCGCCGTGGCCTCATTGGTGGACT CATGGGCGGGACGGTCAGCGCGGTGGCCTCATTGGTGGACT < 41bp 0.486800225120476 0.793786113965242 0.13223913 0.63436013 prediction 0.587572227930485 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115865 chr10:73115866 synonymous SNV . 0 22 hm5C_associated_SNPs_102409 0 0 0 0 1 chromatin 0.500231917131421 0.500231643832785 0.26872026 0 hm5C_site_55554 DeepMRMD:0.26872026;iRNA_m5C:0 55555 chr10 102822322 102822322 1 + C G rs201640457 102822321 + 102822301 102822341 41 TGCCCGAACGCGCTGATGCCCCGAGTGCTCGCAGGGCTTCC TGCCCGAACGCGCTGATGCCCGGAGTGCTCGCAGGGCTTCC < 41bp 0.497591737814883 0.793785632869841 0.21682575 0.8707818 prediction 0.587571265739681 Functional Gain - KAZALD1 ENSG00000107821 UTR5 Human protein_coding chr10:102822321 chr10:102822322 . . 0 22 hm5C_associated_SNPs_102410 0 0 1 0 1 nucleus 0.500232481296606 0.50023164392249 0.7415636 0 hm5C_site_55555 DeepMRMD:0.7415636;iRNA_m5C:0 55556 chr15 44068996 44068996 1 + C G rs148271399 44068995 + 44068975 44069015 41 CGCTGACACTCTTGCAGCGCCCGCAGGGCAGCGTCGTTGAG CGCTGACACTCTTGCAGCGCCGGCAGGGCAGCGTCGTTGAG < 41bp 0.50941952110688 0.803189833625112 0.01801619 0.06055352 prediction 0.587540625036465 Functional Gain - ELL3 ENSG00000128886 CDS Human protein_coding chr15:44068995 chr15:44068996 nonsynonymous SNV 0.896 3 22 hm5C_associated_SNPs_102411 0 0 0 0 0 Endoplasmic reticulum 0.50023091495624 0.50023164170251 0 1.45349254188076e-06 hm5C_site_55556 DeepMRMD:0;iRNA_m5C:1.45349254188076e-06 55557 chr7 53104048 53104048 1 + C A GBM 53104044 + 53104024 53104064 41 GAGCAAAAATGGAGCGGTTGCTTCCTTCGTGCCCAGGCCAG GAGCAAAAATGGAGCGGTTGCTTCATTCGTGCCCAGGCCAG < 41bp 0.419213435818296 0.793744485993003 0.028941244 0.13235238 prediction 0.587488971986006 Functional Gain - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53104044 chr7:53104048 synonymous SNV . 0 25 hm5C_associated_SNPs_102412 0 0 0 0 0 unknown 0.500231643921092 0.500231643924635 0 7.08610947697252e-12 hm5C_site_55557 DeepMRMD:0;iRNA_m5C:7.08610947697252e-12 55558 chr9 141016298 141016298 1 + C A BLCA 141016294 + 141016274 141016314 41 GGAGGCTGTGGCCACCAACTCGGGCCGCTCCTCCAGGACTT GGAGGCTGTGGCCACCAACTCGGGACGCTCCTCCAGGACTT < 41bp 0.582187915474872 0.875907051452043 0.9395088 0.9440439 prediction 0.587438271954343 Functional Gain - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:141016294 chr9:141016298 nonsynonymous SNV 0.992 2 25 hm5C_associated_SNPs_102413 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.00907020000000003 0 hm5C_site_55558 DeepMRMD:0.00907020000000003;iRNA_m5C:0 55559 chr20 2843363 2843363 1 + C G STAD 2843362 + 2843342 2843382 41 AAGAGTCTGCTCAGGGTTGGCCTGGATGGCCGGGCCGGGGA AAGAGTCTGCTCAGGGTTGGCGTGGATGGCCGGGCCGGGGA < 41bp 0.511304132393549 0.805010082721309 0.33048248 0.5370739 prediction 0.587411900655521 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843362 chr20:2843363 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_102414 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921093 0.0741478 2.22044604925031e-16 hm5C_site_55559 DeepMRMD:0.0741478;iRNA_m5C:2.22044604925031e-16 55560 chr11 66190315 66190315 1 + C A LUAD 66190311 + 66190291 66190331 41 GCCCCTCTGGAGCCGAGACCCCGCCCAGGTCCTGGCCCTGG GCCCCTCTGGAGCCGAGACCCCGCACAGGTCCTGGCCCTGG < 41bp 0.377949967135798 0.793704558219254 0.10025072 0.097975165 prediction 0.587409116438509 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190311 chr11:66190315 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_102415 0 0 0 0 1 unknown 0.500231643866651 0.500231643921117 0 1.08931530462542e-10 hm5C_site_55560 DeepMRMD:0;iRNA_m5C:1.08931530462542e-10 55561 chr2 232265042 232265042 1 + C A rs143779367 232265038 + 232265018 232265058 41 CCTGGGAGCTAGCAATGCACCCAGCCCTTGACTGTGCCCTG CCTGGGAGCTAGCAATGCACCCAGACCTTGACTGTGCCCTG < 41bp 0.461440316536037 0.793690476903779 0.05713013 0.05799237 prediction 0.587380953807559 Functional Gain - B3GNT7 ENSG00000156966 UTR3 Human protein_coding chr2:232265038 chr2:232265042 . . 0 25 hm5C_associated_SNPs_102416 0 0 0 0 0 exosome 0.500231643893179 0.500231594553112 0 0 hm5C_site_55561 DeepMRMD:0;iRNA_m5C:0 55562 chr9 35906583 35906583 1 + T A PAAD 35906579 + 35906559 35906599 41 ACCCCCGCCACACCCCTCACCACCTCCACCACCACCACCAC ACCCCCGCCACACCCCTCACCACCACCACCACCACCACCAC < 41bp 0.499933130926784 0.79368264584259 0.08721265 0.0730772 prediction 0.58736529168518 Functional Gain - HRCT1 ENSG00000196196 CDS Human protein_coding chr9:35906579 chr9:35906583 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_102417 0 0 0 0 0 Endoplasmic reticulum 0.500231644375502 0.500231651940945 0 1.51308867657463e-08 hm5C_site_55562 DeepMRMD:0;iRNA_m5C:1.51308867657463e-08 55563 chr1 78958457 78958457 1 + T A LUSC 78958453 + 78958433 78958473 41 CCATGAACAATTCCAAACAGCTAGTGTCTCCTGCAGCTGCG CCATGAACAATTCCAAACAGCTAGAGTCTCCTGCAGCTGCG < 41bp 0.505121169414466 0.798799661333685 0.11073473 0.12575907 prediction 0.587356983838438 Functional Gain - PTGFR ENSG00000122420 CDS Human protein_coding chr1:78958453 chr1:78958457 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_102418 0 0 0 0 0 exosome 0.500231643964804 0.500231643936737 0 0 hm5C_site_55563 DeepMRMD:0;iRNA_m5C:0 55564 chr6 45480048 45480048 1 + C G LUAD 45480047 + 45480027 45480067 41 TCTTACCCCTCCTACCTGAGCCAGATGACGTCCCCGTCCAT TCTTACCCCTCCTACCTGAGCGAGATGACGTCCCCGTCCAT < 41bp 0.512227039607884 0.80589383788197 0.8679604 0.8944162 prediction 0.587333596548172 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45480047 chr6:45480048 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_102419 0 0 0 0 2 Cytosol 0.50023164392109 0.500231643921092 0.0529116000000001 3.99680288865056e-15 hm5C_site_55564 DeepMRMD:0.0529116000000001;iRNA_m5C:3.99680288865056e-15 55565 chr11 1464594 1464594 1 + C A LUAD 1464590 + 1464570 1464610 41 GAAGTATGACGGCCGGAAGGCGGACGTGTGGAGCTGCGGCG GAAGTATGACGGCCGGAAGGCGGAAGTGTGGAGCTGCGGCG < 41bp 0.417694891872574 0.793659191574354 0.89721495 0.89508224 prediction 0.587318383148708 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1464590 chr11:1464594 nonsynonymous SNV 0.970 2 25 hm5C_associated_SNPs_102420 0 0 0 0 2 exosome 0.50023164392109 0.500231643927736 0 1.32904798277877e-11 hm5C_site_55565 DeepMRMD:0;iRNA_m5C:1.32904798277877e-11 55566 chr3 181720725 181720725 1 + C A rs147255774 181720721 + 181720701 181720741 41 GCAGAGCAAAGGGACAGAGCCTGGCGAGAGGCTACTCCCTG GCAGAGCAAAGGGACAGAGCCTGGAGAGAGGCTACTCCCTG < 41bp 0.464190323690046 0.793623962390186 0.43331504 0.51900697 prediction 0.587247924780371 Functional Gain - LINC01206 ENSG00000242512 ncRNA_exonic Human lincRNA chr3:181720721 chr3:181720725 . . 0 25 hm5C_associated_SNPs_102421 0 0 0 0 0 unknown 0.500231649137115 0.500231642936343 0.0380139399999999 0 hm5C_site_55566 DeepMRMD:0.0380139399999999;iRNA_m5C:0 55567 chr16 20493375 20493375 1 + T G rs376072890 20493373 + 20493353 20493393 41 AGGCTGCGGCAGGAGAATCACATGAACCCGGGGGGCGGAGT AGGCTGCGGCAGGAGAATCACAGGAACCCGGGGGGCGGAGT < 41bp 0.541332085390168 0.834947013336165 0.824591 0.9085705 prediction 0.587229855891992 Functional Gain - ACSM2A ENSG00000183747 intronic Human protein_coding chr16:20493373 chr16:20493375 . . 0 23 hm5C_associated_SNPs_102422 0 0 0 0 0 exosome 0.500231502334745 0.500231643923427 0.167959 2.83177363558096e-07 hm5C_site_55567 DeepMRMD:0.167959;iRNA_m5C:2.83177363558096e-07 55568 chr5 180374646 180374646 1 + T G SKCM 180374644 + 180374624 180374664 41 GTGTAAGCGAGAGAGAGAAGCATGGGCCGGTGCCTTATTCA GTGTAAGCGAGAGAGAGAAGCAGGGGCCGGTGCCTTATTCA < 41bp 0.56904466008139 0.86264312892604 0.17772636 0.9185035 prediction 0.5871969376893 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180374644 chr5:180374646 nonsynonymous SNV 0.097 0 23 hm5C_associated_SNPs_102423 0 0 0 0 1 chromatin 0.500231727040359 0.500231638616493 0.837007 0 hm5C_site_55568 DeepMRMD:0.837007;iRNA_m5C:0 55569 chr1 16380202 16380202 1 + T G BLCA 16380199 + 16380179 16380219 41 CACACTGGCCAAGGACATGCCACTGGAGGAGGTGGTCAAGG CACACTGGCCAAGGACATGCCACGGGAGGAGGTGGTCAAGG < 41bp 0.4008366239645 0.793589389532323 0.11348683 0.2531049 prediction 0.587178779064645 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16380199 chr1:16380202 nonsynonymous SNV 0.837 4 24 hm5C_associated_SNPs_102424 0 0 0 0 1 exosome 0.500231643921093 0.500231643913086 0 0 hm5C_site_55569 DeepMRMD:0;iRNA_m5C:0 55570 chr10 19896799 19896799 1 + T G rs16919148 19896797 + 19896777 19896817 41 TGTGATGGTTTTGCCGACTGCATGGATTTCCAGCTTGATGA TGTGATGGTTTTGCCGACTGCAGGGATTTCCAGCTTGATGA < 41bp 0.554638311093471 0.848224674067306 0.10464534 0.72088516 prediction 0.58717272594767 Functional Gain - MALRD1 ENSG00000204740 CDS Human protein_coding chr10:19896797 chr10:19896799 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_102425 0 0 1 0 1 Cytosol 0.500231643921092 0.500231655051762 0.44177032 2.22613392164561e-08 hm5C_site_55570 DeepMRMD:0.44177032;iRNA_m5C:2.22613392164561e-08 55571 chr8 27528508 27528508 1 + C A SKCM 27528504 + 27528484 27528524 41 CAGAGGCCCGAAAGGAGACCCCGGCAGCTTGGGCCCCCTGG CAGAGGCCCGAAAGGAGACCCCGGAAGCTTGGGCCCCCTGG < 41bp 0.425045885021059 0.793579592392368 0.3123545 0.7056301 prediction 0.587159184784736 Functional Gain - SCARA3 ENSG00000168077 CDS Human protein_coding chr8:27528504 chr8:27528508 synonymous SNV . 0 25 hm5C_associated_SNPs_102426 0 0 1 0 1 Cytosol 0.500231643921847 0.500231643921096 0.4112602 0 hm5C_site_55571 DeepMRMD:0.4112602;iRNA_m5C:0 55572 chr4 71508450 71508450 1 + C G LUSC 71508449 + 71508429 71508469 41 GCAATGAAAAAATCCAAAATCCAAAGGAGAAGCCCCTGGGT GCAATGAAAAAATCCAAAATCGAAAGGAGAAGCCCCTGGGT < 41bp 0.504023635711117 0.797602167131279 0.5375074 0.89681125 prediction 0.587157062840322 Functional Gain - ENAM ENSG00000132464 CDS Human protein_coding chr4:71508449 chr4:71508450 nonsynonymous SNV 0.063 4 22 hm5C_associated_SNPs_102427 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.7186077 0 hm5C_site_55572 DeepMRMD:0.7186077;iRNA_m5C:0 55573 chr4 40351384 40351384 1 + T A LUAD 40351380 + 40351360 40351400 41 TGTTGGCCATGACTGTATTTCAGCTAATGGTGGCAGAAATC TGTTGGCCATGACTGTATTTCAGCAAATGGTGGCAGAAATC < 41bp 0.523556138538897 0.817128707833355 0.24847564 0.23210526 prediction 0.587145138588917 Functional Gain - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40351380 chr4:40351384 nonsynonymous SNV 0.986 5 25 hm5C_associated_SNPs_102428 0 0 0 0 1 nucleus 0.500231647735816 0.500231675281196 0 5.50907606200468e-08 hm5C_site_55573 DeepMRMD:0;iRNA_m5C:5.50907606200468e-08 55574 chr17 4836276 4836276 1 + A C BRCA 4836279 - 4836259 4836299 41 CAAGAGGCAGCGAGGTCAGCCGGTTGAAGGAGACGTCCAGG CAAGAGGCAGCGAGGTCAGCCGGGTGAAGGAGACGTCCAGG < 41bp 0.589368901612718 0.882918201997429 0.8203653 0.930694 prediction 0.587098600769422 Functional Gain - GP1BA ENSG00000185245 CDS Human protein_coding chr17:4836279 chr17:4836276 nonsynonymous SNV 0.921 4 24 hm5C_associated_SNPs_102429 0 0 1 0 0 exosome 0.500231643923922 0.500231643926102 0.2206574 4.35829150546851e-12 hm5C_site_55574 DeepMRMD:0.2206574;iRNA_m5C:4.35829150546851e-12 55575 chr19 852341 852341 1 + C A LUAD 852337 + 852317 852357 41 CCCAGCCCCACCATGACCCTCGGCCGCCGACTCGCGTGTCT CCCAGCCCCACCATGACCCTCGGCAGCCGACTCGCGTGTCT < 41bp 0.575614442241302 0.86914472504161 0.8925706 0.904309 prediction 0.587060565600614 Functional Gain - ELANE ENSG00000197561 CDS Human protein_coding chr19:852337 chr19:852341 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_102430 0 0 0 0 1 exosome 0.500231643921092 0.500231643921097 0.0234768000000001 9.32587340685131e-15 hm5C_site_55575 DeepMRMD:0.0234768000000001;iRNA_m5C:9.32587340685131e-15 55576 chr1 162467935 162467935 1 + C A UCEC 162467931 + 162467911 162467951 41 CGCTGCTGCGGCAACCCTGGCTCGCCCCCCGGCGCCCTCAA CGCTGCTGCGGCAACCCTGGCTCGACCCCCGGCGCCCTCAA < 41bp 0.598505851870169 0.892033978099559 0.19949609 0.34332103 prediction 0.58705625245878 Functional Gain - UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162467931 chr1:162467935 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_102431 0 0 1 0 0 chromatin 0.500231643925246 0.50023164392114 0 0 hm5C_site_55576 DeepMRMD:0;iRNA_m5C:0 55577 chr14 52781702 52781702 1 + C A LUAD 52781698 + 52781678 52781718 41 ATCGGGCACCCCTACTTCTACCAGCGCCGCGTCTCGCGCTC ATCGGGCACCCCTACTTCTACCAGAGCCGCGTCTCGCGCTC < 41bp 0.598760548450601 0.892282326651707 0.22843692 0.41455376 prediction 0.587043556402212 Functional Gain - PTGER2 ENSG00000125384 CDS Human protein_coding chr14:52781698 chr14:52781702 nonsynonymous SNV 0.943 1 25 hm5C_associated_SNPs_102432 0 0 0 0 0 exosome 0.500231643928675 0.500231643977926 0 9.85023174138178e-11 hm5C_site_55577 DeepMRMD:0;iRNA_m5C:9.85023174138178e-11 55578 chr19 41703800 41703800 1 + C G rs577627773 41703799 + 41703779 41703819 41 GAGCTGATCCAGGCGGAGGCCCGGTGTCTGGTGGAGACATT GAGCTGATCCAGGCGGAGGCCGGGTGTCTGGTGGAGACATT < 41bp 0.495038197751963 0.793507381389961 0.8457366 0.89432734 prediction 0.587014762779922 Functional Gain - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41703799 chr19:41703800 nonsynonymous SNV 0.159 0 22 hm5C_associated_SNPs_102433 0 0 0 0 1 Ribosome 0.500231643921089 0.500231643921092 0.0971814800000002 6.21724893790088e-15 hm5C_site_55578 DeepMRMD:0.0971814800000002;iRNA_m5C:6.21724893790088e-15 55579 chr12 8673727 8673727 1 + C A SARC 8673723 + 8673703 8673743 41 TGTTGTTGTTCTTTCAGATTCTGGCATAAGAATGAACCCGA TGTTGTTGTTCTTTCAGATTCTGGAATAAGAATGAACCCGA < 41bp 0.589418635860917 0.882923265539522 0.231089 0.30105442 prediction 0.58700925935721 Functional Gain - CLEC4D ENSG00000166527 CDS Human protein_coding chr12:8673723 chr12:8673727 nonsynonymous SNV 0.151 1 25 hm5C_associated_SNPs_102434 0 0 0 0 1 exosome 0.500231666858331 0.500231643651738 0 0 hm5C_site_55579 DeepMRMD:0;iRNA_m5C:0 55580 chr22 39382006 39382006 1 + C A rs144579352 39382002 + 39381982 39382022 41 GTCACCCTGACCATCTCTGCCGCCCGCCTCTACTACTACTG GTCACCCTGACCATCTCTGCCGCCAGCCTCTACTACTACTG < 41bp 0.379424498386129 0.793481352519911 0.040759176 0.28713822 prediction 0.586962705039822 Functional Gain - APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39382002 chr22:39382006 nonsynonymous SNV 0.115 3 25 hm5C_associated_SNPs_102435 0 0 1 0 1 exosome 0.500231572224899 0.500255082220229 0 4.70199906592583e-05 hm5C_site_55580 DeepMRMD:0;iRNA_m5C:4.70199906592583e-05 55581 chr4 187086562 187086562 1 + C A rs61155675 187086558 + 187086538 187086578 41 ACGTCACGGAGCAGGTTCCCCCCGCTAGTCACGGAGACCAG ACGTCACGGAGCAGGTTCCCCCCGATAGTCACGGAGACCAG < 41bp 0.38313823209968 0.793459484781997 0.1682823 0.12277073 prediction 0.586918969563994 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187086558 chr4:187086562 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_102436 0 0 0 0 2 Cytosol 0.500231643900572 0.500231643818308 0 0 hm5C_site_55581 DeepMRMD:0;iRNA_m5C:0 55582 chr19 49535816 49535816 1 + C G rs576183783 49535815 + 49535795 49535835 41 GGACATGGGCATCCAAGGAGCCGCTTCGGCCACGGTGCCGC GGACATGGGCATCCAAGGAGCGGCTTCGGCCACGGTGCCGC < 41bp 0.507621066431693 0.801069298791511 0.15170997 0.46456403 prediction 0.586896464719637 Functional Gain - CGB2 ENSG00000104818 CDS Human protein_coding chr19:49535815 chr19:49535816 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_102437 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_55582 DeepMRMD:0;iRNA_m5C:0 55583 chr1 177250345 177250345 1 + T G OV 177250343 + 177250323 177250363 41 CCCTCTAAGAATTTGGGTTACATGAAAATTAACACCTTGCA CCCTCTAAGAATTTGGGTTACAGGAAAATTAACACCTTGCA < 41bp 0.477859271100728 0.793398730681929 0.2726829 0.5746041 prediction 0.586797461363859 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177250343 chr1:177250345 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_102438 0 0 0 0 0 Nucleus 0.500231644502675 0.500231619875967 0.1492082 0 hm5C_site_55583 DeepMRMD:0.1492082;iRNA_m5C:0 55584 chr7 142983654 142983654 1 + C A UCEC 142983650 + 142983630 142983670 41 CCCCAGCACCTGAGGAGGAACAACCTAGCCATCCAGAGGGG CCCCAGCACCTGAGGAGGAACAACATAGCCATCCAGAGGGG < 41bp 0.393658449483298 0.793391079116043 0.14249656 0.14903393 prediction 0.586782158232086 Functional Gain - TMEM139 ENSG00000178826 CDS Human protein_coding chr7:142983650 chr7:142983654 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_102439 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55584 DeepMRMD:0;iRNA_m5C:0 55585 chr19 47422639 47422639 1 + T G LUAD 47422637 + 47422617 47422657 41 TCAGCGAGATCCAATGTAAACGTGGACTTGGCTTTCAGCAC TCAGCGAGATCCAATGTAAACGGGGACTTGGCTTTCAGCAC < 41bp 0.466880085167314 0.793365776979485 0.37115353 0.90565306 prediction 0.586731553958969 Functional Gain - ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47422637 chr19:47422639 nonsynonymous SNV 0.976 5 23 hm5C_associated_SNPs_102440 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643920769 0.81130612 0 hm5C_site_55585 DeepMRMD:0.81130612;iRNA_m5C:0 55586 chrX 48126808 48126808 1 + T G rs12396577 48126805 + 48126785 48126825 41 AGCCCCCCTCACTCTGTTTCCTGTTCAGCATGTACTCCCCT AGCCCCCCTCACTCTGTTTCCTGGTCAGCATGTACTCCCCT < 41bp 0.479812951776121 0.793310718867068 0.09919393 0.31325817 prediction 0.586621437734136 Functional Gain - SSX1 ENSG00000126752 UTR3 Human protein_coding chrX:48126805 chrX:48126808 . . 0 24 hm5C_associated_SNPs_102441 0 0 1 1 0 chromatin 0.500231643921093 0.500231648183753 0 8.52532000550354e-09 hm5C_site_55586 DeepMRMD:0;iRNA_m5C:8.52532000550354e-09 55587 chr21 46066408 46066408 1 + C A ESCA 46066404 + 46066384 46066424 41 GTCCACCATGTCTGTCTGCTCCAGCGCTTACTCCGACTCCT GTCCACCATGTCTGTCTGCTCCAGAGCTTACTCCGACTCCT < 41bp 0.554768072963055 0.84807830958461 0.8656661 0.88056445 prediction 0.586620473243111 Functional Gain - KRTAP10-11 ENSG00000243489 CDS Human protein_coding chr21:46066404 chr21:46066408 nonsynonymous SNV 0.009 3 25 hm5C_associated_SNPs_102442 0 0 0 0 0 unknown 0.500237171150181 0.500231734514652 0.0297967000000001 0 hm5C_site_55587 DeepMRMD:0.0297967000000001;iRNA_m5C:0 55588 chr12 67663094 67663094 1 + C A rs571171889 67663090 + 67663070 67663110 41 GACCTTAGCTTTCCGTAGCGCCCGCGTCTGCCGCCCCCGCC GACCTTAGCTTTCCGTAGCGCCCGAGTCTGCCGCCCCCGCC < 41bp 0.562963754376745 0.856233423769632 0.47027814 0.4916288 prediction 0.586539338785774 Functional Gain - CAND1 ENSG00000111530 UTR5 Human protein_coding chr12:67663090 chr12:67663094 . . 0 25 hm5C_associated_SNPs_102443 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921256 0 3.27071703054571e-13 hm5C_site_55588 DeepMRMD:0;iRNA_m5C:3.27071703054571e-13 55589 chr18 59217289 59217289 1 + T A LUSC 59217285 + 59217265 59217305 41 GTGTCTTTCACCTGCCTATCCTGATAGCAGATAGCGGGCAG GTGTCTTTCACCTGCCTATCCTGAAAGCAGATAGCGGGCAG < 41bp 0.54139425551814 0.834639465382855 0.4111998 0.33257055 prediction 0.586490419729431 Functional Gain - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59217285 chr18:59217289 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102444 0 0 0 0 1 nucleus 0.500231643917223 0.500231642431135 0 0 hm5C_site_55589 DeepMRMD:0;iRNA_m5C:0 55590 chr13 45953337 45953337 1 + T G rs531109288 45953334 + 45953314 45953354 41 TGCCTTCTGCCCTTAGGCTCCGGTAGATTGCAAATGACCTG TGCCTTCTGCCCTTAGGCTCCGGGAGATTGCAAATGACCTG < 41bp 0.44434129399229 0.793235166383835 0.33638197 0.79347146 prediction 0.58647033276767 Functional Gain - TPT1-AS1 ENSG00000170919 ncRNA_exonic Human processed_transcript chr13:45953334 chr13:45953337 . . 0 24 hm5C_associated_SNPs_102445 0 0 0 0 1 unknown 0.5002316439211 0.500231643921092 0.58694292 0 hm5C_site_55590 DeepMRMD:0.58694292;iRNA_m5C:0 55591 chr19 15198596 15198596 1 + C A GBM 15198592 + 15198572 15198612 41 GGGCAAGTGGAAAGCCTTCTCCACCTGTGGCTTACACCTCA GGGCAAGTGGAAAGCCTTCTCCACATGTGGCTTACACCTCA < 41bp 0.405615706367311 0.793208898079307 0.2941609 0.8379797 prediction 0.586417796158614 Functional Gain - OR1I1 ENSG00000094661 CDS Human protein_coding chr19:15198592 chr19:15198596 synonymous SNV . 0 25 hm5C_associated_SNPs_102446 0 0 0 0 0 unknown 0.500231643782012 0.500231643921092 0.6759594 2.78161493838525e-10 hm5C_site_55591 DeepMRMD:0.6759594;iRNA_m5C:2.78161493838525e-10 55592 chr2 85133174 85133174 1 + C G LUAD 85133173 + 85133153 85133193 41 ACCAGACATGGGGGAAATCGCCAGCTTCGATAAGGCCAAGC ACCAGACATGGGGGAAATCGCGAGCTTCGATAAGGCCAAGC < 41bp 0.497762345564675 0.793194378942918 0.8892824 0.89726543 prediction 0.586388757885835 Functional Gain - TMSB10 ENSG00000034510 CDS Human protein_coding chr2:85133173 chr2:85133174 synonymous SNV . 0 22 hm5C_associated_SNPs_102447 0 0 1 0 1 Ribosome 0.500231643921081 0.500231643921092 0.01596606 2.22044604925031e-14 hm5C_site_55592 DeepMRMD:0.01596606;iRNA_m5C:2.22044604925031e-14 55593 chr19 58967919 58967919 1 + C A KIRC 58967915 + 58967895 58967935 41 GGTGCGCCGGGGAGGGAAGCCAAGCCCAGTCCTGAAGCCAG GGTGCGCCGGGGAGGGAAGCCAAGACCAGTCCTGAAGCCAG < 41bp 0.585750035075015 0.878943210596274 0.35891014 0.58140856 prediction 0.58638635104252 Functional Gain - ZNF324B ENSG00000249471 CDS Human protein_coding chr19:58967915 chr19:58967919 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_102448 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.16281712 0 hm5C_site_55593 DeepMRMD:0.16281712;iRNA_m5C:0 55594 chr13 64320963 64320963 1 + T G ESCA 64320960 + 64320940 64320980 41 TGCAACTACTACGGCAACTCCTGTGGCTATGGCTCCAGCTA TGCAACTACTACGGCAACTCCTGGGGCTATGGCTCCAGCTA < 41bp 0.427892570139811 0.793192200860013 0.29609782 0.8830818 prediction 0.586384401720027 Functional Gain - OR7E156P;LOC102723968 ENSG00000226974 CDS Human other chr13:64320960 chr13:64320963 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_102449 0 0 0 0 0 unknown 0.500232311502562 0.500231652892724 0.7661636 0 hm5C_site_55594 DeepMRMD:0.7661636;iRNA_m5C:0 55595 chr3 52823817 52823817 1 + C A CESC 52823813 + 52823793 52823833 41 TCAGAACATTACGCTGAACCCCGGCTTTGGTGGGCCTGTGT TCAGAACATTACGCTGAACCCCGGATTTGGTGGGCCTGTGT < 41bp 0.398728521627783 0.793191483084172 0.7387667 0.8544792 prediction 0.586382966168344 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52823813 chr3:52823817 synonymous SNV . 0 25 hm5C_associated_SNPs_102450 0 0 1 0 1 Endoplasmic reticulum 0.500231643921019 0.500231643921092 0.231425 1.47437617670221e-13 hm5C_site_55595 DeepMRMD:0.231425;iRNA_m5C:1.47437617670221e-13 55596 chr2 242758105 242758105 1 + C G HNSC 242758104 + 242758084 242758124 41 CGGCTACACATGGGTATCCGCCTGAGCCAGTCCCCGCTGGA CGGCTACACATGGGTATCCGCGTGAGCCAGTCCCCGCTGGA < 41bp 0.514371651471282 0.807556210566772 0.6165927 0.8653089 prediction 0.586369118190979 Functional Gain - NEU4 ENSG00000204099 CDS Human protein_coding chr2:242758104 chr2:242758105 nonsynonymous SNV 0.083 4 22 hm5C_associated_SNPs_102451 0 0 1 0 0 cytosol 0.500242463923851 0.500231643216287 0.4974324 0 hm5C_site_55596 DeepMRMD:0.4974324;iRNA_m5C:0 55597 chr4 166300542 166300542 1 + C A LUSC 166300538 + 166300518 166300558 41 ATCTCCTTCGAGTACCACCGCTACCCCGAGCTGCGCGAGGC ATCTCCTTCGAGTACCACCGCTACACCGAGCTGCGCGAGGC < 41bp 0.407191394893235 0.793178547153321 0.07531673 0.11905986 prediction 0.586357094306642 Functional Gain - CPE ENSG00000109472 CDS Human protein_coding chr4:166300538 chr4:166300542 nonsynonymous SNV 0.957 0 25 hm5C_associated_SNPs_102452 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_55597 DeepMRMD:0;iRNA_m5C:0 55598 chr16 70512234 70512234 1 + C A rs17881635 70512230 + 70512210 70512250 41 CCTGGCATCAAGGTGGGGCGCTCCCGGGCTCAGCTGCCACT CCTGGCATCAAGGTGGGGCGCTCCAGGGCTCAGCTGCCACT < 41bp 0.367420528664262 0.793172429818312 0.08222094 0.8416798 prediction 0.586344859636623 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70512230 chr16:70512234 synonymous SNV . 0 25 hm5C_associated_SNPs_102453 0 0 0 0 1 chromatin 0.500231643921092 0.500231432671622 0.6833596 0 hm5C_site_55598 DeepMRMD:0.6833596;iRNA_m5C:0 55599 chr4 1347132 1347132 1 + C A STAD 1347128 + 1347108 1347148 41 TCAGATGAGGACGAGGACAGCGACCTCGAGGAGTTTGTGCG TCAGATGAGGACGAGGACAGCGACATCGAGGAGTTTGTGCG < 41bp 0.383375612808652 0.793172117423687 0.095333606 0.11158189 prediction 0.586344234847374 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1347128 chr4:1347132 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_102454 0 0 1 0 1 Nucleus 0.500231643921081 0.500231644114773 0 3.87384124778123e-10 hm5C_site_55599 DeepMRMD:0;iRNA_m5C:3.87384124778123e-10 55600 chr1 35260639 35260639 1 + C A LGG 35260635 + 35260615 35260655 41 CCCCGTGGGCCAGGGGCCCTCATCCCCACCATGCCCCACCT CCCCGTGGGCCAGGGGCCCTCATCACCACCATGCCCCACCT < 41bp 0.383343971097995 0.793158977788594 0.05962515 0.03750986 prediction 0.586317955577189 Functional Gain - GJA4 ENSG00000187513 CDS Human protein_coding chr1:35260635 chr1:35260639 synonymous SNV . 0 25 hm5C_associated_SNPs_102455 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_55600 DeepMRMD:0;iRNA_m5C:0 55601 chr22 28316554 28316554 1 + G T rs576250744 28316558 - 28316538 28316578 41 GGAGAAAGTTTCTGGAAGTTCTGACATTCCAGAAACTTTCT GGAGAAAGTTTCTGGAAGTTCTGAAATTCCAGAAACTTTCT < 41bp 0.560314633247682 0.853471685833313 0.13143602 0.1859259 prediction 0.586314105171262 Functional Gain - MIR3199-1;MIR3199-2 ENSG00000264073 ncRNA_exonic Human miRNA chr22:28316558 chr22:28316554 . . 0 25 hm5C_associated_SNPs_102456 0 0 0 0 0 unknown 0.500231643912474 0.500231643921092 0 1.723776676954e-11 hm5C_site_55601 DeepMRMD:0;iRNA_m5C:1.723776676954e-11 55602 chr3 121591442 121591442 1 + T A LUAD 121591438 + 121591418 121591458 41 GAGTAGTTGTGATAGTTCATCAGATTCCAAAAGTTCATCAT GAGTAGTTGTGATAGTTCATCAGAATCCAAAAGTTCATCAT < 41bp 0.505196703352172 0.798297906203054 0.45110795 0.33775228 prediction 0.586202405701763 Functional Gain - EAF2 ENSG00000145088 CDS Human protein_coding chr3:121591438 chr3:121591442 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_102457 0 0 1 0 1 exosome 0.500231643981885 0.50023164394959 0 0 hm5C_site_55602 DeepMRMD:0;iRNA_m5C:0 55603 chrX 9900789 9900789 1 + C A UCEC 9900785 + 9900765 9900805 41 CCAGAAGCACTGCTCCCTCCCAAGCAGCAGCACCTGCGCCT CCAGAAGCACTGCTCCCTCCCAAGAAGCAGCACCTGCGCCT < 41bp 0.39759473320654 0.79308129925345 0.27932823 0.73523724 prediction 0.586162598506901 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9900785 chrX:9900789 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102458 0 0 0 0 0 cytosol 0.500231643759024 0.500231643921093 0.47047448 3.24137827689697e-10 hm5C_site_55603 DeepMRMD:0.47047448;iRNA_m5C:3.24137827689697e-10 55604 chr3 16217180 16217180 1 + C G rs142412711 16217179 + 16217159 16217199 41 CCCCCTCCAGAGGGCTCTGCCCGAGGTGCGGCACCCACTGT CCCCCTCCAGAGGGCTCTGCCGGAGGTGCGGCACCCACTGT < 41bp 0.498608950006454 0.793079533962107 0.83605576 0.9356952 prediction 0.586159067924213 Functional Gain - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16217179 chr3:16217180 synonymous SNV . 0 22 hm5C_associated_SNPs_102459 0 0 0 0 1 exosome 0.500231643921065 0.500231643921092 0.19927888 5.39568389967826e-14 hm5C_site_55604 DeepMRMD:0.19927888;iRNA_m5C:5.39568389967826e-14 55605 chr16 29381732 29381732 1 + C A rs555905133 29381728 + 29381708 29381748 41 CCTCCCGAGTAGTTGGACTACAGGCGTGCACCAACAGGGCC CCTCCCGAGTAGTTGGACTACAGGAGTGCACCAACAGGGCC < 41bp 0.458264835142259 0.793077273274276 0.6637336 0.5355296 prediction 0.586154546548553 Functional Gain - SNX29P2;NPIPB11 ENSG00000198106 ncRNA_exonic Human lincRNA chr16:29381728 chr16:29381732 . . 0 25 hm5C_associated_SNPs_102460 0 0 0 3 0 unknown 0.500231643921093 0.500231643932009 0 2.18336460022783e-11 hm5C_site_55605 DeepMRMD:0;iRNA_m5C:2.18336460022783e-11 55606 chr1 119683328 119683328 1 + C A UCEC 119683324 + 119683304 119683344 41 TCTGTTCAGAGAGCCAATCCCAGTCTCGCGACTCCTGCTTG TCTGTTCAGAGAGCCAATCCCAGTATCGCGACTCCTGCTTG < 41bp 0.438911217809848 0.79307685509568 0.27439135 0.22373557 prediction 0.586153710191359 Functional Gain - LOC101929147 ENSG00000231365 ncRNA_exonic Human antisense chr1:119683324 chr1:119683328 . . 0 25 hm5C_associated_SNPs_102461 0 0 1 0 1 unknown 0.500231643923128 0.500231642911607 0 0 hm5C_site_55606 DeepMRMD:0;iRNA_m5C:0 55607 chrX 150349641 150349641 1 + C A LUAD 150349637 + 150349617 150349657 41 CCAAGCCTGCCACTACCAGCCACCCTAAGCCCACTGCTGCT CCAAGCCTGCCACTACCAGCCACCATAAGCCCACTGCTGCT < 41bp 0.388992211387882 0.793076197487936 0.02389419 0.018988043 prediction 0.586152394975872 Functional Gain - GPR50 ENSG00000102195 CDS Human protein_coding chrX:150349637 chrX:150349641 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_102462 0 0 0 0 0 exosome 0.50023154358204 0.500231615346444 0 1.43528808838056e-07 hm5C_site_55607 DeepMRMD:0;iRNA_m5C:1.43528808838056e-07 55608 chr3 50252876 50252876 1 + T A BLCA 50252872 + 50252852 50252892 41 TACTCCATCCACCTGCTACTCAAGTCCTCAGGGGTCGTGGG TACTCCATCCACCTGCTACTCAAGACCTCAGGGGTCGTGGG < 41bp 0.486699499954598 0.793054529224199 0.93999803 0.9426323 prediction 0.586109058448397 Functional Gain - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50252872 chr3:50252876 . 1.000 1 25 hm5C_associated_SNPs_102463 0 0 1 0 2 exosome 0.500231643921093 0.500231643921093 0.00526853999999988 0 hm5C_site_55608 DeepMRMD:0.00526853999999988;iRNA_m5C:0 55609 chr19 42928407 42928407 1 + C A rs36084626 42928403 + 42928383 42928423 41 CGGCGCCTGCGCACTAGCTTCAGGCCGCGGGCCGGCCCAAG CGGCGCCTGCGCACTAGCTTCAGGACGCGGGCCGGCCCAAG < 41bp 0.55780057246924 0.850844800124114 0.6419567 0.8324768 prediction 0.586088455309747 Functional Gain - LIPE-AS1 ENSG00000213904 ncRNA_exonic Human antisense chr19:42928403 chr19:42928407 . . 0 25 hm5C_associated_SNPs_102464 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.3810402 0 hm5C_site_55609 DeepMRMD:0.3810402;iRNA_m5C:0 55610 chr17 79639902 79639902 1 + C G rs372530090 79639901 + 79639881 79639921 41 ATCTTGCAGGGGGTGAGTGCCCGATGGACTAGGGCCAAGGC ATCTTGCAGGGGGTGAGTGCCGGATGGACTAGGGCCAAGGC < 41bp 0.504354269649389 0.797396160944594 0.3329227 0.912655 prediction 0.58608378259041 Functional Gain - CCDC137 ENSG00000185298 UTR3 Human protein_coding chr17:79639901 chr17:79639902 . . 0 22 hm5C_associated_SNPs_102465 0 0 1 1 0 Ribosome 0.500231645388726 0.500231643922409 0.82531 0 hm5C_site_55610 DeepMRMD:0.82531;iRNA_m5C:0 55611 chr8 99019788 99019788 1 + C G LUAD 99019787 + 99019767 99019807 41 GATCCTTTGCCTGTCAGTGTCCTGAGGGACACGTGCTCCGC GATCCTTTGCCTGTCAGTGTCGTGAGGGACACGTGCTCCGC < 41bp 0.525638043889595 0.818675299841834 0.36260307 0.88545984 prediction 0.586074511904477 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99019787 chr8:99019788 nonsynonymous SNV 0.400 0 22 hm5C_associated_SNPs_102466 0 0 0 0 2 Cytosol 0.500231043672544 0.500231832916042 0.77091968 1.57848699533503e-06 hm5C_site_55611 DeepMRMD:0.77091968;iRNA_m5C:1.57848699533503e-06 55612 chr11 107799426 107799426 1 + C A rs77818165 107799422 + 107799402 107799442 41 GCGCTCCCCCGCCTGCGACCCCACCGTCGGCGTGGACTTCT GCGCTCCCCCGCCTGCGACCCCACAGTCGGCGTGGACTTCT < 41bp 0.410457884205548 0.793015784794926 0.016470194 0.0071148872 prediction 0.586031569589853 Functional Gain - RAB39A ENSG00000179331 CDS Human protein_coding chr11:107799422 chr11:107799426 synonymous SNV . 0 25 hm5C_associated_SNPs_102467 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_55612 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 55613 chr8 43053093 43053093 1 + C G OV 43053092 + 43053072 43053112 41 CAGGAACCCCATTCTTTTATCCAGGTAAGTCACCTCCAACC CAGGAACCCCATTCTTTTATCGAGGTAAGTCACCTCCAACC < 41bp 0.514577844614678 0.807587770270339 0.9152287 0.93893397 prediction 0.586019851311324 Functional Gain - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43053092 chr8:43053093 nonsynonymous SNV 0.979 2 22 hm5C_associated_SNPs_102468 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.04741054 0 hm5C_site_55613 DeepMRMD:0.04741054;iRNA_m5C:0 55614 chr13 111938519 111938519 1 + T G OV 111938517 + 111938497 111938537 41 CTTAGTAAGAGCCCTAAGACCATGAAAAAGCTGCTGCCCAA CTTAGTAAGAGCCCTAAGACCAGGAAAAAGCTGCTGCCCAA < 41bp 0.529742970892405 0.822745279442735 0.41729537 0.8901528 prediction 0.58600461710066 Functional Gain - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111938517 chr13:111938519 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_102469 0 0 1 0 2 Nucleus 0.500231643935514 0.500231643921083 0.7803056 0 hm5C_site_55614 DeepMRMD:0.7803056;iRNA_m5C:0 55615 chr16 15123847 15123847 1 + C A COAD 15123843 + 15123823 15123863 41 AAGCAGCTGGTGCCTGCAAGCGGCCTCACAGTCATGGATCT AAGCAGCTGGTGCCTGCAAGCGGCATCACAGTCATGGATCT < 41bp 0.607843238358269 0.900829059758873 0.52462727 0.5500053 prediction 0.585971642801207 Functional Gain - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15123843 chr16:15123847 nonsynonymous SNV 0.835 0 25 hm5C_associated_SNPs_102470 0 0 1 0 2 Cytosol 0.500231643921161 0.500231644852245 0.0507560600000001 1.862169085598e-09 hm5C_site_55615 DeepMRMD:0.0507560600000001;iRNA_m5C:1.862169085598e-09 55616 chr14 103810995 103810995 1 + C A rs539579430 103810991 + 103810971 103811011 41 TGGGGCAGTAGGGGAAATTCCACCCAATTTTGCTATGAGCC TGGGGCAGTAGGGGAAATTCCACCAAATTTTGCTATGAGCC < 41bp 0.466525168552925 0.792984557773665 0.23694965 0.17664462 prediction 0.585969115547331 Functional Gain - EIF5 ENSG00000100664 UTR3 Human protein_coding chr14:103810991 chr14:103810995 . . 0 25 hm5C_associated_SNPs_102471 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_55616 DeepMRMD:0;iRNA_m5C:0 55617 chr22 40364155 40364155 1 + C G LUAD 40364154 + 40364134 40364174 41 ACCGGAAGCTGTCGGATCACCCCCCGACCCTTCCCCTGCAG ACCGGAAGCTGTCGGATCACCGCCCGACCCTTCCCCTGCAG < 41bp 0.487837352811246 0.792917610824183 0.27812153 0.42698848 prediction 0.585835221648367 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40364154 chr22:40364155 nonsynonymous SNV 0.018 1 22 hm5C_associated_SNPs_102472 0 0 0 0 0 chromatin 0.50023164391302 0.500231643949483 0 7.2926109595528e-11 hm5C_site_55617 DeepMRMD:0;iRNA_m5C:7.2926109595528e-11 55618 chr10 134000445 134000445 1 + C A rs562642197 134000441 + 134000421 134000461 41 CCGGAACGGAGCCGTGCGGCCCCGCGCGCTCGCAGTCTGTC CCGGAACGGAGCCGTGCGGCCCCGAGCGCTCGCAGTCTGTC < 41bp 0.483392486236256 0.792910278675935 0.09467742 0.1501407 prediction 0.58582055735187 Functional Gain - DPYSL4 ENSG00000151640 UTR5 Human protein_coding chr10:134000441 chr10:134000445 . . 0 25 hm5C_associated_SNPs_102473 0 0 0 0 0 Endoplasmic reticulum 0.500231643938776 0.500364914041876 0 0.00026654020619965 hm5C_site_55618 DeepMRMD:0;iRNA_m5C:0.00026654020619965 55619 chr16 84883114 84883114 1 + C A UCEC 84883110 + 84883090 84883130 41 GTGCTCGGGGCCCATGTGCACGCACTACACACAGGTAACTC GTGCTCGGGGCCCATGTGCACGCAATACACACAGGTAACTC < 41bp 0.391857028684183 0.792904546645328 0.20613852 0.22375739 prediction 0.585809093290655 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84883110 chr16:84883114 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_102474 0 0 0 0 1 Nucleus 0.500231644029396 0.500231643921101 0 0 hm5C_site_55619 DeepMRMD:0;iRNA_m5C:0 55620 chr19 44778448 44778448 1 + T G SKCM 44778445 + 44778425 44778465 41 TGTGAGACATGTGGGAAGGGCTTTAGTCAGAGTTCGCATCT TGTGAGACATGTGGGAAGGGCTTGAGTCAGAGTTCGCATCT < 41bp 0.416247243991659 0.792893861279549 0.086678356 0.12318328 prediction 0.585787722559098 Functional Gain - ZNF233 ENSG00000159915 CDS Human protein_coding chr19:44778445 chr19:44778448 nonsynonymous SNV 0.017 3 24 hm5C_associated_SNPs_102475 0 0 0 0 0 chromatin 0.500231643921125 0.500231639771796 0 0 hm5C_site_55620 DeepMRMD:0;iRNA_m5C:0 55621 chr16 70154519 70154519 1 + C G rs199750793 70154518 + 70154498 70154538 41 CGTTCCATGGCCCTGCCCACCCAGGCACAGGTGGTCATCTG CGTTCCATGGCCCTGCCCACCGAGGCACAGGTGGTCATCTG < 41bp 0.512856200279212 0.805728974941422 0.28342617 0.8965721 prediction 0.585745549324421 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70154518 chr16:70154519 nonsynonymous SNV 0.790 0 22 hm5C_associated_SNPs_102476 0 0 0 0 0 Nucleus 0.50023164392108 0.500231643932912 0.7931442 2.36639596806754e-11 hm5C_site_55621 DeepMRMD:0.7931442;iRNA_m5C:2.36639596806754e-11 55622 chr6 50791352 50791352 1 + C G LUAD 50791351 + 50791331 50791371 41 TGCACCAGCCCCAGCAACATCCCTGGGGGCAACGGCAGCGG TGCACCAGCCCCAGCAACATCGCTGGGGGCAACGGCAGCGG < 41bp 0.522310503105236 0.81514867162668 0.20621216 0.31151497 prediction 0.585676337042887 Functional Gain - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50791351 chr6:50791352 nonsynonymous SNV 0.986 3 22 hm5C_associated_SNPs_102477 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_55622 DeepMRMD:0;iRNA_m5C:0 55623 chr13 43597524 43597524 1 + T G rs185776758 43597521 + 43597501 43597541 41 GGTCCGCGTTGGCTTTGCGCCTGTGAGTGTGATTCAAGAAC GGTCCGCGTTGGCTTTGCGCCTGGGAGTGTGATTCAAGAAC < 41bp 0.57137674422883 0.86421195296119 0.0056760907 0.110593826 prediction 0.585670417464719 Functional Gain - DNAJC15 ENSG00000120675 UTR5 Human protein_coding chr13:43597521 chr13:43597524 . . 0 24 hm5C_associated_SNPs_102478 0 0 0 0 0 Ribosome 0.50023164392271 0.500231643911869 0 0 hm5C_site_55623 DeepMRMD:0;iRNA_m5C:0 55624 chr16 84883063 84883063 1 + C A rs138500867 84883059 + 84883039 84883079 41 GGACTACACCTACCCCTACCCGAGCGAGTGCAACCCCTGGT GGACTACACCTACCCCTACCCGAGAGAGTGCAACCCCTGGT < 41bp 0.609921984644414 0.902754663690483 0.89970815 0.9049618 prediction 0.585665358092137 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84883059 chr16:84883063 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_102479 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921092 0.0105073 0 hm5C_site_55624 DeepMRMD:0.0105073;iRNA_m5C:0 55625 chr14 90499491 90499491 1 + C A GBM 90499487 + 90499467 90499507 41 AGTGAAACAGAAGTTCTTCGCTGGCAGCCAGGAGCCAATGG AGTGAAACAGAAGTTCTTCGCTGGAAGCCAGGAGCCAATGG < 41bp 0.607381634121973 0.900197354433558 0.08664334 0.21238804 prediction 0.58563144062317 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90499487 chr14:90499491 nonsynonymous SNV 0.043 1 25 hm5C_associated_SNPs_102480 0 0 1 0 1 chromatin 0.500231643921092 0.500231646379222 0 4.91625962162345e-09 hm5C_site_55625 DeepMRMD:0;iRNA_m5C:4.91625962162345e-09 55626 chr5 1244761 1244761 1 + C A UCEC 1244757 + 1244737 1244777 41 TTGCGTGGATGACCGGGAGGCGGCCCAGCCCCTACTGGCGG TTGCGTGGATGACCGGGAGGCGGCACAGCCCCTACTGGCGG < 41bp 0.40484135374881 0.792809417929463 0.5483193 0.66516566 prediction 0.585618835858926 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1244757 chr5:1244761 nonsynonymous SNV 0.003 4 25 hm5C_associated_SNPs_102481 0 0 0 0 1 unknown 0.500231643921093 0.500231643916386 0.23369272 0 hm5C_site_55626 DeepMRMD:0.23369272;iRNA_m5C:0 55627 chr2 133403777 133403777 1 + G C CESC 133403778 - 133403758 133403798 41 CGGGTACCAGTCCTTCTGCTCCCCAGGGAAACTGAACTCAG CGGGTACCAGTCCTTCTGCTCGCCAGGGAAACTGAACTCAG < 41bp 0.497352550160661 0.792794276443055 0.24226353 0.41254276 prediction 0.585588552886109 Functional Gain - LYPD1 ENSG00000150551 CDS Human protein_coding chr2:133403778 chr2:133403777 synonymous SNV . 0 22 hm5C_associated_SNPs_102482 0 0 1 0 1 Nucleus 0.500231636269602 0.500231643998432 0 1.54576595967626e-08 hm5C_site_55627 DeepMRMD:0;iRNA_m5C:1.54576595967626e-08 55628 chr12 6946946 6946946 1 + T A GBM 6946942 + 6946922 6946962 41 AGTCACCCAGTGCACGCAGACAACTGCGTCCTGGACCCTGA AGTCACCCAGTGCACGCAGACAACAGCGTCCTGGACCCTGA < 41bp 0.528171629583596 0.82095612143187 0.30152005 0.33233744 prediction 0.585568983696547 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6946942 chr12:6946946 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_102483 0 0 0 0 2 membrane 0.500231643919462 0.500231643919775 0 6.25943741283663e-13 hm5C_site_55628 DeepMRMD:0;iRNA_m5C:6.25943741283663e-13 55629 chr13 113803395 113803395 1 + C A CESC 113803391 + 113803371 113803411 41 TGAACGTGGCGCCTGCCTGCCTCCCCGAGCGTGACTGGGCC TGAACGTGGCGCCTGCCTGCCTCCACGAGCGTGACTGGGCC < 41bp 0.366924281989722 0.792772867637359 0.1304884 0.9584825 prediction 0.585545735274718 Functional Gain - F10 ENSG00000126218 CDS Human protein_coding chr13:113803391 chr13:113803395 nonsynonymous SNV 0.732 5 25 hm5C_associated_SNPs_102484 0 0 1 0 0 nucleus 0.500231643921118 0.500234721750994 0.916965 6.15565975259358e-06 hm5C_site_55629 DeepMRMD:0.916965;iRNA_m5C:6.15565975259358e-06 55630 chrX 30269224 30269224 1 + T A LUAD 30269220 + 30269200 30269240 41 GGAATGGGCTTCTGATGCCTCTCCTGGGTGTGATCTTCTTA GGAATGGGCTTCTGATGCCTCTCCAGGGTGTGATCTTCTTA < 41bp 0.554759796866867 0.847532658092293 0.048515618 0.9102549 prediction 0.585545722450852 Functional Gain - MAGEB1 ENSG00000214107 CDS Human protein_coding chrX:30269220 chrX:30269224 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_102485 0 0 0 0 0 nucleolus 0.500231643921461 0.500231644060061 0.8205098 2.7719826434236e-10 hm5C_site_55630 DeepMRMD:0.8205098;iRNA_m5C:2.7719826434236e-10 55631 chr3 183756692 183756692 1 + C A rs115389821 183756688 + 183756668 183756708 41 CAGTTCAGCCACGCGATGGACGCCCTGCTCTTCCGCCTCTA CAGTTCAGCCACGCGATGGACGCCATGCTCTTCCGCCTCTA < 41bp 0.615650245127595 0.908420036355683 0.07077435 0.20820454 prediction 0.585539582456176 Functional Gain - HTR3D ENSG00000186090 CDS Human protein_coding chr3:183756688 chr3:183756692 nonsynonymous SNV 0.871 3 25 hm5C_associated_SNPs_102486 0 0 0 0 0 unknown 0.500231643136952 0.500232579218563 0 1.87216322089512e-06 hm5C_site_55631 DeepMRMD:0;iRNA_m5C:1.87216322089512e-06 55632 chr4 74352727 74352727 1 + C A LUAD 74352723 + 74352703 74352743 41 AGAAGGAACCCATTTGTCTTCGCCCCTACACTTCTAACTGT AGAAGGAACCCATTTGTCTTCGCCACTACACTTCTAACTGT < 41bp 0.393051045860607 0.792759798518068 0.06941065 0.1404548 prediction 0.585519597036137 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74352723 chr4:74352727 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_102487 0 0 0 0 1 exosome 0.50023164392109 0.500231644757371 0 1.67256097860502e-09 hm5C_site_55632 DeepMRMD:0;iRNA_m5C:1.67256097860502e-09 55633 chrX 48369802 48369802 1 + C A UCEC 48369798 + 48369778 48369818 41 CTCAGCCTCCTGTGCTACCTCGTGCTGTTCCTCTGCCGACA CTCAGCCTCCTGTGCTACCTCGTGATGTTCCTCTGCCGACA < 41bp 0.432182640105466 0.792756914396703 0.78169435 0.64957356 prediction 0.585513828793407 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48369798 chrX:48369802 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_102488 0 0 0 0 2 nucleolus 0.500231643931559 0.500231643950612 0 3.81057407849994e-11 hm5C_site_55633 DeepMRMD:0;iRNA_m5C:3.81057407849994e-11 55634 chr20 42694471 42694471 1 + C A LUAD 42694467 + 42694447 42694487 41 GGCCTCCTTCCTGACGCCGTCGGACCTGCAGGCCTTCCGCA GGCCTCCTTCCTGACGCCGTCGGAACTGCAGGCCTTCCGCA < 41bp 0.392243512132554 0.792750694999811 0.8528986 0.88703364 prediction 0.585501389999622 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42694467 chr20:42694471 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_102489 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.06827008 0 hm5C_site_55634 DeepMRMD:0.06827008;iRNA_m5C:0 55635 chr2 173460705 173460705 1 + T G rs180942102 173460703 + 173460683 173460723 41 TTCCGCAGTGCCTAGACACACTTGGGACATCGGAAAATCCA TTCCGCAGTGCCTAGACACACTGGGGACATCGGAAAATCCA < 41bp 0.537377449219547 0.830124386976485 0.017748803 0.13856238 prediction 0.585493875513877 Functional Gain - PDK1 ENSG00000152256 UTR3 Human protein_coding chr2:173460703 chr2:173460705 . . 0 23 hm5C_associated_SNPs_102490 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55635 DeepMRMD:0;iRNA_m5C:0 55636 chr16 86601507 86601507 1 + C A rs200483763 86601503 + 86601483 86601523 41 CCCACCTCAAGGAGCCGCCCCCGGCGGCGTCCAAGGGCGCC CCCACCTCAAGGAGCCGCCCCCGGAGGCGTCCAAGGGCGCC < 41bp 0.444218512962186 0.792745431156505 0.92087704 0.92619944 prediction 0.58549086231301 Functional Gain - FOXC2 ENSG00000176692 CDS Human protein_coding chr16:86601503 chr16:86601507 nonsynonymous SNV 0.254 1 25 hm5C_associated_SNPs_102491 0 0 0 0 0 exosome 0.500231643922607 0.500231643930128 0.0106447999999999 1.50432999390659e-11 hm5C_site_55636 DeepMRMD:0.0106447999999999;iRNA_m5C:1.50432999390659e-11 55637 chr10 45486510 45486510 1 + C G OV 45486509 + 45486489 45486529 41 CTGACTTGGGCGTGGAAGTCCCCCATGAAGTGAGTGGGGGC CTGACTTGGGCGTGGAAGTCCGCCATGAAGTGAGTGGGGGC < 41bp 0.505124706265811 0.797859016138143 0.16632107 0.84281915 prediction 0.585468619744665 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486509 chr10:45486510 nonsynonymous SNV 0.319 4 22 hm5C_associated_SNPs_102492 0 0 1 0 1 Cytosol 0.500231643925208 0.500231648096489 0.6856383 8.34256219661711e-09 hm5C_site_55637 DeepMRMD:0.6856383;iRNA_m5C:8.34256219661711e-09 55638 chr19 37753488 37753488 1 + C A rs190472843 37753484 + 37753464 37753504 41 TCCCTGATCCCTGTTGCTCCCTGGCGGAGTTTTCTAGTCCC TCCCTGATCCCTGTTGCTCCCTGGAGGAGTTTTCTAGTCCC < 41bp 0.462850169750711 0.792719696062465 0.07397786 0.3617862 prediction 0.585439392124929 Functional Gain - LINC01535 ENSG00000226686 ncRNA_exonic Human lincRNA chr19:37753484 chr19:37753488 . . 0 25 hm5C_associated_SNPs_102493 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_55638 DeepMRMD:0;iRNA_m5C:0 55639 chr15 41228470 41228470 1 + C A LUSC 41228466 + 41228446 41228486 41 GGTCCAAGCCGCATGTGCCGCTGCCGTCCTGGATTCACGGG GGTCCAAGCCGCATGTGCCGCTGCAGTCCTGGATTCACGGG < 41bp 0.383999481595005 0.79271601860135 0.18399063 0.13651386 prediction 0.585432037202701 Functional Gain - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41228466 chr15:41228470 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_102494 0 0 0 0 1 Endoplasmic reticulum 0.500231643756694 0.500231643920831 0 3.28272298233401e-10 hm5C_site_55639 DeepMRMD:0;iRNA_m5C:3.28272298233401e-10 55640 chr15 78390759 78390759 1 + C A UCEC 78390755 + 78390735 78390775 41 AATGATCTGTATGATGCCATCACCCGGGGCCTCCACCAGAC AATGATCTGTATGATGCCATCACCAGGGGCCTCCACCAGAC < 41bp 0.618004275500214 0.910714342166387 0.13615307 0.27802426 prediction 0.585420133332346 Functional Gain - SH2D7 ENSG00000183476 CDS Human protein_coding chr15:78390755 chr15:78390759 synonymous SNV . 0 25 hm5C_associated_SNPs_102495 0 0 0 0 1 unknown 0.500231643921082 0.500247070196237 0 3.08525503107671e-05 hm5C_site_55640 DeepMRMD:0;iRNA_m5C:3.08525503107671e-05 55641 chr16 2643125 2643125 1 + C A rs60087715 2643121 + 2643101 2643141 41 CCTCCCCAGGCTGCAGGTGCCGAGCGGGAGCACCACTCCTG CCTCCCCAGGCTGCAGGTGCCGAGAGGGAGCACCACTCCTG < 41bp 0.526621231031051 0.819316204833603 0.5646472 0.85585713 prediction 0.585389947605103 Functional Gain - PDPK1 ENSG00000140992 intronic Human protein_coding chr16:2643121 chr16:2643125 . . 0 25 hm5C_associated_SNPs_102496 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921088 0.58241986 0 hm5C_site_55641 DeepMRMD:0.58241986;iRNA_m5C:0 55642 chr12 113319638 113319638 1 + C G LUAD 113319637 + 113319617 113319657 41 ACGTTAAGCTGCACCTCCTGCCGGGAGCCAGCAAGGTACCA ACGTTAAGCTGCACCTCCTGCGGGGAGCCAGCAAGGTACCA < 41bp 0.507884786242504 0.800576085313766 0.2741658 0.83680546 prediction 0.585382598142525 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113319637 chr12:113319638 nonsynonymous SNV 0.977 4 22 hm5C_associated_SNPs_102497 0 0 0 0 2 exosome 0.500231643957615 0.500231643921092 0.67361092 0 hm5C_site_55642 DeepMRMD:0.67361092;iRNA_m5C:0 55643 chr9 12775919 12775919 1 + T A COAD 12775915 + 12775895 12775935 41 AGCTACTGCAGCTTCCCTCCCTCCTTGTCGTCCTCCTCTTC AGCTACTGCAGCTTCCCTCCCTCCATGTCGTCCTCCTCTTC < 41bp 0.562698374389515 0.855387078846513 0.092351586 0.9543461 prediction 0.585377408913996 Functional Gain - LURAP1L ENSG00000153714 CDS Human protein_coding chr9:12775915 chr9:12775919 nonsynonymous SNV 0.951 0 25 hm5C_associated_SNPs_102498 0 0 1 0 0 nucleus 0.500231643921144 0.500231643926268 0.9086922 1.02478026065e-11 hm5C_site_55643 DeepMRMD:0.9086922;iRNA_m5C:1.02478026065e-11 55644 chr15 98514407 98514407 1 + T G SARC 98514405 + 98514385 98514425 41 GAAGAGAGCCAGCCTGTTTCCTTCATTCTCTGAACGTATTT GAAGAGAGCCAGCCTGTTTCCTGCATTCTCTGAACGTATTT < 41bp 0.512587891301779 0.805273409809635 0.16027984 0.18080834 prediction 0.585371037015711 Functional Gain - ARRDC4 ENSG00000140450 CDS Human protein_coding chr15:98514405 chr15:98514407 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_102499 0 0 1 0 1 nucleoplasm 0.500231643920865 0.500231056306977 0 0 hm5C_site_55644 DeepMRMD:0;iRNA_m5C:0 55645 chr16 54967295 54967295 1 + C A UCEC 54967291 + 54967271 54967311 41 GGCCCTCGGTTATCCATTCGCCGCCTCCGCCGCCGCCTCCT GGCCCTCGGTTATCCATTCGCCGCATCCGCCGCCGCCTCCT < 41bp 0.401971330635888 0.7926827748198 0.24363375 0.23849073 prediction 0.5853655496396 Functional Gain - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54967291 chr16:54967295 nonsynonymous SNV 0.494 3 25 hm5C_associated_SNPs_102500 0 0 1 0 0 exosome 0.500231643921092 0.500231643896969 0 0 hm5C_site_55645 DeepMRMD:0;iRNA_m5C:0 55646 chr8 121015293 121015293 1 + T A SKCM 121015289 + 121015269 121015309 41 AGCAGCTGTGGCAGCAGCGGCTACTTCAGCAGCAGCCCCAC AGCAGCTGTGGCAGCAGCGGCTACATCAGCAGCAGCCCCAC < 41bp 0.45398166990949 0.792681843644045 0.30788505 0.63871115 prediction 0.585363687288091 Functional Gain - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:121015289 chr8:121015293 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_102501 0 0 0 0 2 exosome 0.500231644653191 0.500231673355739 0.2774223 5.7405096898222e-08 hm5C_site_55646 DeepMRMD:0.2774223;iRNA_m5C:5.7405096898222e-08 55647 chr9 96392312 96392312 1 + T G LUAD 96392309 + 96392289 96392329 41 GACATATACCACTGCCCAAACTGTGAGAAAACCCATGGGAA GACATATACCACTGCCCAAACTGGGAGAAAACCCATGGGAA < 41bp 0.404256960087474 0.792678413166807 0.13779354 0.78510386 prediction 0.585356826333614 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96392309 chr9:96392312 nonsynonymous SNV 0.995 5 24 hm5C_associated_SNPs_102502 0 0 1 0 3 chromatin 0.500231643921093 0.500231643921028 0.57020772 0 hm5C_site_55647 DeepMRMD:0.57020772;iRNA_m5C:0 55648 chr9 98229635 98229635 1 + G T CHOL 98229639 - 98229619 98229659 41 GGCACCACCCGAGTGAGAGACGGGCTGGACCTTACGGACAT GGCACCACCCGAGTGAGAGACGGGATGGACCTTACGGACAT < 41bp 0.596442937095941 0.889111927290146 0.8192295 0.8551376 prediction 0.585337980388411 Functional Gain - PTCH1 ENSG00000185920 CDS Human protein_coding chr9:98229639 chr9:98229635 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_102503 0 0 1 0 1 Endoplasmic reticulum 0.500231639905151 0.50023164386761 0.0718162 7.92491983148125e-09 hm5C_site_55648 DeepMRMD:0.0718162;iRNA_m5C:7.92491983148125e-09 55649 chrX 55479292 55479292 1 + T G BLCA 55479290 + 55479270 55479310 41 AGTCCGGTGGAGTATGAGTTCTTCTGGGGGCCCCGAGCACA AGTCCGGTGGAGTATGAGTTCTGCTGGGGGCCCCGAGCACA < 41bp 0.541623419628355 0.834286416383498 0.28553122 0.22614041 prediction 0.585325993510286 Functional Gain - MAGEH1 ENSG00000187601 CDS Human protein_coding chrX:55479290 chrX:55479292 nonsynonymous SNV 0.035 2 23 hm5C_associated_SNPs_102504 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55649 DeepMRMD:0;iRNA_m5C:0 55650 chr17 27076180 27076180 1 + T G CHOL 27076178 + 27076158 27076198 41 GCCAAGCCCAACCTTGAGTGCTTCAGCCCAGCCTTCTACAC GCCAAGCCCAACCTTGAGTGCTGCAGCCCAGCCTTCTACAC < 41bp 0.474418072877599 0.792635143234706 0.01608336 0.022525579 prediction 0.585270286469412 Functional Gain - TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27076178 chr17:27076180 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_102505 0 0 0 0 0 Ribosome 0.500231644011001 0.500231643862638 0 0 hm5C_site_55650 DeepMRMD:0;iRNA_m5C:0 55651 chr11 27114851 27114851 1 + C A BLCA 27114847 + 27114827 27114867 41 AGTAAGACTCACCGGAGCATCTGACAAACCAGGAGAAGTTT AGTAAGACTCACCGGAGCATCTGAAAAACCAGGAGAAGTTT < 41bp 0.376364535285761 0.792630836537726 0.19547868 0.21786585 prediction 0.585261673075451 Functional Gain - BBOX1 ENSG00000129151 CDS Human protein_coding chr11:27114847 chr11:27114851 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_102506 0 0 0 0 1 cytosol 0.500193136238785 0.500231647452763 0 7.70224279569298e-05 hm5C_site_55651 DeepMRMD:0;iRNA_m5C:7.70224279569298e-05 55652 chr20 2293615 2293615 1 + T A LUSC 2293611 + 2293591 2293631 41 TCTGAATTTCCGCCGTGACGCTGCTACTGATGTGGCCAGCA TCTGAATTTCCGCCGTGACGCTGCAACTGATGTGGCCAGCA < 41bp 0.456990654427454 0.792594444693876 0.06939727 0.113643646 prediction 0.585188889387752 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2293611 chr20:2293615 synonymous SNV . 0 25 hm5C_associated_SNPs_102507 0 0 0 0 2 exosome 0.500231643921093 0.500231643921168 0 1.50546242139171e-13 hm5C_site_55652 DeepMRMD:0;iRNA_m5C:1.50546242139171e-13 55653 chr3 9803340 9803340 1 + G C LUSC 9803341 - 9803321 9803361 41 CCCGGGCAGTGTGCTCTCCACCGCCTGTGGAACTCCGGGAT CCCGGGCAGTGTGCTCTCCACGGCCTGTGGAACTCCGGGAT < 41bp 0.523359023985288 0.815945420858979 0.09273955 0.22004822 prediction 0.585172793747383 Functional Gain - CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9803341 chr3:9803340 synonymous SNV . 0 22 hm5C_associated_SNPs_102508 0 0 1 0 1 Ribosome 0.500232762797919 0.500232328533825 0 0 hm5C_site_55653 DeepMRMD:0;iRNA_m5C:0 55654 chr11 64064365 64064365 1 + C G rs200879755 64064364 + 64064344 64064384 41 CTGCAGGAGGTGGCTGATGCCCTGGGAGGGGGTGCGGACCC CTGCAGGAGGTGGCTGATGCCGTGGGAGGGGGTGCGGACCC < 41bp 0.49367450612161 0.792580830819709 0.13501143 0.88958204 prediction 0.585161661639418 Functional Gain - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64064364 chr11:64064365 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_102509 0 0 0 0 1 exosome 0.5002321355123 0.500447655718308 0.77916408 0.000431040412016026 hm5C_site_55654 DeepMRMD:0.77916408;iRNA_m5C:0.000431040412016026 55655 chr19 7460003 7460003 1 + C A rs58104113 7459999 + 7459979 7460019 41 ATCGCGCATGCGCTGCTCTCCTCGCGCGGCTTCCCGCTTCC ATCGCGCATGCGCTGCTCTCCTCGAGCGGCTTCCCGCTTCC < 41bp 0.431558945106551 0.792568566965232 0.57766765 0.8906994 prediction 0.585137133930464 Functional Gain - ARHGEF18 ENSG00000104880 UTR5 Human protein_coding chr19:7459999 chr19:7460003 . . 0 25 hm5C_associated_SNPs_102510 0 0 0 0 0 Cytosol 0.500231643971891 0.500231643396665 0.6260635 0 hm5C_site_55655 DeepMRMD:0.6260635;iRNA_m5C:0 55656 chr7 31618018 31618018 1 + C A LUSC 31618014 + 31617994 31618034 41 CAAGAGCTTGTCTCATCTTGCAGGCAAAGGACCAGACTCAT CAAGAGCTTGTCTCATCTTGCAGGAAAAGGACCAGACTCAT < 41bp 0.412052785821602 0.792564753090267 0.53859997 0.8151899 prediction 0.585129506180535 Functional Gain - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31618014 chr7:31618018 synonymous SNV . 0 25 hm5C_associated_SNPs_102511 0 0 0 0 1 exosome 0.500231643937141 0.500231644109068 0.55317986 3.438536122502e-10 hm5C_site_55656 DeepMRMD:0.55317986;iRNA_m5C:3.438536122502e-10 55657 chr2 105472520 105472520 1 + T G rs570097332 105472517 + 105472497 105472537 41 CCGCCCCCACACCAGGGCCACCCTGGGGGCTGGGGGGCGGC CCGCCCCCACACCAGGGCCACCCGGGGGGCTGGGGGGCGGC < 41bp 0.443499792103167 0.792549883044658 0.39545065 0.857862 prediction 0.585099766089316 Functional Gain - POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472517 chr2:105472520 synonymous SNV . 0 24 hm5C_associated_SNPs_102512 0 0 0 0 0 exosome 0.500231643918986 0.500231643921087 0.715724 4.20086188057667e-12 hm5C_site_55657 DeepMRMD:0.715724;iRNA_m5C:4.20086188057667e-12 55658 chr9 139739581 139739581 1 + C A STAD 139739577 + 139739557 139739597 41 CGCCACATGGCGCTGTCGCGCACCCCGACGCCCAGCGACTC CGCCACATGGCGCTGTCGCGCACCACGACGCCCAGCGACTC < 41bp 0.41822665750056 0.792547121561976 0.09747219 0.03295532 prediction 0.585094243123953 Functional Gain - C9orf172 ENSG00000232434 CDS Human protein_coding chr9:139739577 chr9:139739581 nonsynonymous SNV 0.220 3 25 hm5C_associated_SNPs_102513 0 0 0 0 0 chromatin 0.500231642724952 0.500321855222922 0 0.000180424995939621 hm5C_site_55658 DeepMRMD:0;iRNA_m5C:0.000180424995939621 55659 chr17 7943288 7943288 1 + C A LUAD 7943284 + 7943264 7943304 41 CGCCAGGAGGAGCTTCAGGCCCGGCAGGAGATGTACCAGTG CGCCAGGAGGAGCTTCAGGCCCGGAAGGAGATGTACCAGTG < 41bp 0.45247831996745 0.792501261983142 0.27468485 0.44247288 prediction 0.585002523966284 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7943284 chr17:7943288 nonsynonymous SNV 0.389 1 25 hm5C_associated_SNPs_102514 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55659 DeepMRMD:0;iRNA_m5C:0 55660 chr2 155714132 155714132 1 + C A rs189489848 155714128 + 155714108 155714148 41 ACAGGCCTGACTCAGTGGCTCACGCCTGTAATCCCAGTACT ACAGGCCTGACTCAGTGGCTCACGACTGTAATCCCAGTACT < 41bp 0.521771835209151 0.814273017078172 0.07253608 0.23652747 prediction 0.585002363738043 Functional Gain - KCNJ3 ENSG00000162989 UTR3 Human protein_coding chr2:155714128 chr2:155714132 . . 0 25 hm5C_associated_SNPs_102515 0 0 0 0 0 exosome 0.500231643925217 0.500231663175381 0 3.85003282588059e-08 hm5C_site_55660 DeepMRMD:0;iRNA_m5C:3.85003282588059e-08 55661 chr12 48359923 48359923 1 + C A PAAD 48359919 + 48359899 48359939 41 TTCTACACGGTGGCAGTGACCAGCCTGTCCAGCCAGATTCA TTCTACACGGTGGCAGTGACCAGCATGTCCAGCCAGATTCA < 41bp 0.615003233404429 0.907479211444301 0.053772718 0.11392975 prediction 0.584951956079745 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48359919 chr12:48359923 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_102516 0 0 1 0 3 Ribosome 0.500231581383528 0.500207186114038 0 0 hm5C_site_55661 DeepMRMD:0;iRNA_m5C:0 55662 chr6 26598969 26598969 1 + T G rs186218450 26598966 + 26598946 26598986 41 CTACCCGGGCAGACATTTTACTGTGTTTCTCAGACCAAGTG CTACCCGGGCAGACATTTTACTGGGTTTCTCAGACCAAGTG < 41bp 0.507104971854398 0.79957510567644 0.075348526 0.5488587 prediction 0.584940267644084 Functional Gain - ABT1 ENSG00000146109 UTR3 Human protein_coding chr6:26598966 chr6:26598969 . . 0 24 hm5C_associated_SNPs_102517 0 0 1 0 0 Ribosome 0.500231643936355 0.500231643921398 0.0977174000000001 0 hm5C_site_55662 DeepMRMD:0.0977174000000001;iRNA_m5C:0 55663 chrX 15540599 15540599 1 + C A rs139052738 15540595 + 15540575 15540615 41 CACCATCTTCAAGTACCAGTCTAGCGCAATATGACAGCAAC CACCATCTTCAAGTACCAGTCTAGAGCAATATGACAGCAAC < 41bp 0.388891189401428 0.792452515541806 0.14820576 0.20835227 prediction 0.584905031083612 Functional Gain - BMX ENSG00000102010 CDS Human protein_coding chrX:15540595 chrX:15540599 nonsynonymous SNV 0.592 1 25 hm5C_associated_SNPs_102518 0 0 0 0 0 cytosol 0.500238318350889 0.500234543351589 0 0 hm5C_site_55663 DeepMRMD:0;iRNA_m5C:0 55664 chr17 79687871 79687871 1 + T G rs562742020 79687868 + 79687848 79687888 41 CTGGGCCCCCCCGCTTGGCTCCCTGGGGGAATGGCCCAGGC CTGGGCCCCCCCGCTTGGCTCCCGGGGGGAATGGCCCAGGC < 41bp 0.527399142236848 0.819831240963577 0.19683051 0.5895052 prediction 0.584864197453457 Functional Gain - SLC25A10 ENSG00000183048 UTR3 Human protein_coding chr17:79687868 chr17:79687871 . . 0 24 hm5C_associated_SNPs_102519 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.1790104 0 hm5C_site_55664 DeepMRMD:0.1790104;iRNA_m5C:0 55665 chr16 816735 816735 1 + T G rs377354840 816732 + 816712 816752 41 AGACAAAGACACCCTAGACACCCTGACCGCCTTCTACCCTG AGACAAAGACACCCTAGACACCCGGACCGCCTTCTACCCTG < 41bp 0.404260926453922 0.7924239570307 0.06659323 0.25209588 prediction 0.5848479140614 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:816732 chr16:816735 nonsynonymous SNV 0.005 4 24 hm5C_associated_SNPs_102520 0 0 0 0 3 nucleus 0.500231643921013 0.500231660488925 0 3.31358231964174e-08 hm5C_site_55665 DeepMRMD:0;iRNA_m5C:3.31358231964174e-08 55666 chr19 19337426 19337426 1 + C A LUAD 19337422 + 19337402 19337442 41 CTGGAGGAGGAAGAGGTGGTCACCCCTGACTTCCAGGAGCC CTGGAGGAGGAAGAGGTGGTCACCACTGACTTCCAGGAGCC < 41bp 0.382150190351724 0.792422918917307 0.3673615 0.34099543 prediction 0.584845837834614 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19337422 chr19:19337426 nonsynonymous SNV 0.199 1 25 hm5C_associated_SNPs_102521 0 0 0 0 0 exosome 0.500231643921085 0.500231643921092 0 1.55431223447522e-14 hm5C_site_55666 DeepMRMD:0;iRNA_m5C:1.55431223447522e-14 55667 chr1 249211538 249211538 1 + T A SKCM 249211534 + 249211514 249211554 41 AGGTCAGACCTCTCATCATCCGGATGAACTGCAATTTCCAG AGGTCAGACCTCTCATCATCCGGAAGAACTGCAATTTCCAG < 41bp 0.504838014756381 0.797260049155231 0.5818284 0.61890376 prediction 0.584844068797701 Functional Gain - PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249211534 chr1:249211538 nonsynonymous SNV 0.940 1 25 hm5C_associated_SNPs_102522 0 0 0 0 1 Cytosol 0.500231644020482 0.500231643921092 0.07415072 0 hm5C_site_55667 DeepMRMD:0.07415072;iRNA_m5C:0 55668 chr1 202097196 202097196 1 + C A UCEC 202097192 + 202097172 202097212 41 TGGTACTTTGGCTGCTACTTCTGCCTGCCCATCCTCTTCAC TGGTACTTTGGCTGCTACTTCTGCATGCCCATCCTCTTCAC < 41bp 0.615873062748168 0.908292629032421 0.059259534 0.16620344 prediction 0.584839132568505 Functional Gain - GPR37L1 ENSG00000170075 CDS Human protein_coding chr1:202097192 chr1:202097196 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_102523 0 0 0 0 0 Nucleus 0.500229572755121 0.500232687250377 0 6.2289905111701e-06 hm5C_site_55668 DeepMRMD:0;iRNA_m5C:6.2289905111701e-06 55669 chr17 65026640 65026640 1 + T A LUAD 65026636 + 65026616 65026656 41 TTCCAGCAACACAGGTGACCCGAGTGACAAGCGGGACGAAG TTCCAGCAACACAGGTGACCCGAGAGACAAGCGGGACGAAG < 41bp 0.498474079249747 0.792406330619417 0.5204268 0.5642609 prediction 0.584812661238834 Functional Gain - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65026636 chr17:65026640 nonsynonymous SNV 0.826 3 25 hm5C_associated_SNPs_102524 0 0 0 0 1 Endoplasmic reticulum 0.500231127118942 0.500231154753579 0.0876682 5.52692740463101e-08 hm5C_site_55669 DeepMRMD:0.0876682;iRNA_m5C:5.52692740463101e-08 55670 chr5 180377339 180377339 1 + C A LUAD 180377335 + 180377315 180377355 41 ACCAGTCCCTTATTTATACCCTGACATGTCGGTTTGAAGGC ACCAGTCCCTTATTTATACCCTGAAATGTCGGTTTGAAGGC < 41bp 0.392432382658358 0.792397153049079 0.032329112 0.024701923 prediction 0.584794306098157 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180377335 chr5:180377339 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_102525 0 0 0 0 0 chromatin 0.500231643921122 0.500231643932747 0 2.32496244478853e-11 hm5C_site_55670 DeepMRMD:0;iRNA_m5C:2.32496244478853e-11 55671 chr16 58537784 58537784 1 + C A LUAD 58537780 + 58537760 58537800 41 AGGGGAACCGCCCAGCCATCCTCACCTACCATGATGTGGGC AGGGGAACCGCCCAGCCATCCTCAACTACCATGATGTGGGC < 41bp 0.372555516472453 0.792396621201216 0.06268242 0.26531976 prediction 0.584793242402431 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58537780 chr16:58537784 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102526 0 0 0 0 3 Exosome 0.500230585053475 0.50023164438193 0 2.11865691057689e-06 hm5C_site_55671 DeepMRMD:0;iRNA_m5C:2.11865691057689e-06 55672 chr6 142539729 142539729 1 + T A HNSC 142539725 + 142539705 142539745 41 GCAGTATGAAGATGTAAGCACTGCTGTCCAGAATCTACAAA GCAGTATGAAGATGTAAGCACTGCAGTCCAGAATCTACAAA < 41bp 0.48371794771897 0.792350393181891 0.10011798 0.13201672 prediction 0.584700786363781 Functional Gain - VTA1 ENSG00000009844 CDS Human protein_coding chr6:142539725 chr6:142539729 synonymous SNV . 0 25 hm5C_associated_SNPs_102527 0 0 1 0 1 Ribosome 0.500232205258508 0.500252240678239 0 4.00708394610039e-05 hm5C_site_55672 DeepMRMD:0;iRNA_m5C:4.00708394610039e-05 55673 chr2 74743207 74743207 1 + C A LUSC 74743203 + 74743183 74743223 41 GGCCGCTGCGGCCGCCGCTGCCCCCGGACCCTCTCTGCCTG GGCCGCTGCGGCCGCCGCTGCCCCAGGACCCTCTCTGCCTG < 41bp 0.398429968654967 0.792347413825383 0.15785772 0.2856896 prediction 0.584694827650766 Functional Gain - TLX2 ENSG00000115297 CDS Human protein_coding chr2:74743203 chr2:74743207 nonsynonymous SNV 0.988 1 25 hm5C_associated_SNPs_102528 0 0 0 0 0 exosome 0.500231643919293 0.500231643917137 0 0 hm5C_site_55673 DeepMRMD:0;iRNA_m5C:0 55674 chr11 20515752 20515752 1 + T G COAD 20515749 + 20515729 20515769 41 GCCCTCAGAGCACCAAAACACACTGGAAACAAACAGTATTT GCCCTCAGAGCACCAAAACACACGGGAAACAAACAGTATTT < 41bp 0.427018698840479 0.792343594471223 0.04715258 0.23850816 prediction 0.584687188942446 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20515749 chr11:20515752 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_102529 0 0 1 0 2 Ribosome 0.5002316436076 0.500231643907383 0 5.99567284709224e-10 hm5C_site_55674 DeepMRMD:0;iRNA_m5C:5.99567284709224e-10 55675 chr16 3367803 3367803 1 + T A LUSC 3367799 + 3367779 3367819 41 CACAGGTGAGCAGCCATATACTTGTAGCATATGCAGGAGAA CACAGGTGAGCAGCCATATACTTGAAGCATATGCAGGAGAA < 41bp 0.491936929800183 0.792320411233931 0.11508939 0.070408374 prediction 0.584640822467863 Functional Gain - ZNF75A ENSG00000162086 CDS Human protein_coding chr16:3367799 chr16:3367803 stopgain 0.079 0 25 hm5C_associated_SNPs_102530 0 0 0 0 0 Cytosol 0.500231589435757 0.500231643519365 0 1.08167214296628e-07 hm5C_site_55675 DeepMRMD:0;iRNA_m5C:1.08167214296628e-07 55676 chr1 12835168 12835168 1 + C A rs17346571 12835164 + 12835144 12835184 41 CCAGGAGATGCTGCGAGACCCTGACAACTATGGTGCAGGCC CCAGGAGATGCTGCGAGACCCTGAAAACTATGGTGCAGGCC < 41bp 0.398467295269189 0.792316513596314 0.18758881 0.31323832 prediction 0.584633027192629 Functional Gain - PRAMEF12 ENSG00000116726 CDS Human protein_coding chr1:12835164 chr1:12835168 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102531 0 0 0 0 0 unknown 0.500231643066099 0.500231644290317 0 2.44843501029379e-09 hm5C_site_55676 DeepMRMD:0;iRNA_m5C:2.44843501029379e-09 55677 chr15 90931486 90931486 1 + C A rs550262812 90931482 + 90931462 90931502 41 CGGGGCCTCGGGGACCCCGGCAAGCCCGCGCACTTGGCAGG CGGGGCCTCGGGGACCCCGGCAAGACCGCGCACTTGGCAGG < 41bp 0.544190109526503 0.836506216251572 0.7433678 0.8415509 prediction 0.584632213450138 Functional Gain - IQGAP1 ENSG00000140575 UTR5 Human protein_coding chr15:90931482 chr15:90931486 . . 0 25 hm5C_associated_SNPs_102532 0 0 1 0 0 Nucleus 0.500231643919067 0.500231643917933 0.1963662 0 hm5C_site_55677 DeepMRMD:0.1963662;iRNA_m5C:0 55678 chr1 212798530 212798530 1 + C A LUAD 212798526 + 212798506 212798546 41 AAGAGTATGCTGGACATGGCCAGGCCACCAAGAGAAAAAAA AAGAGTATGCTGGACATGGCCAGGACACCAAGAGAAAAAAA < 41bp 0.597287258365208 0.889596230189682 0.9171413 0.89831775 prediction 0.584617943648948 Functional Gain - FAM71A ENSG00000162771 CDS Human protein_coding chr1:212798526 chr1:212798530 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_102533 0 0 0 0 0 exosome 0.500231660225881 0.50023164391833 0 0 hm5C_site_55678 DeepMRMD:0;iRNA_m5C:0 55679 chr19 35551628 35551628 1 + C G KIRC 35551627 + 35551607 35551647 41 GGGGTGCAGGCTGTGGTCTACCACGGGGGCTATCTTCCCTT GGGGTGCAGGCTGTGGTCTACGACGGGGGCTATCTTCCCTT < 41bp 0.517672273314905 0.809979367340917 0.46328068 0.74075353 prediction 0.584614188052025 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35551627 chr19:35551628 nonsynonymous SNV 0.789 5 22 hm5C_associated_SNPs_102534 0 0 1 0 2 cytosol 0.500231643921092 0.500231643921093 0.48150706 8.88178419700125e-16 hm5C_site_55679 DeepMRMD:0.48150706;iRNA_m5C:8.88178419700125e-16 55680 chr3 11314019 11314019 1 + C A rs536650425 11314015 + 11313995 11314035 41 GGCATGCCTCTGCTCCTTTGCGCACGCGCGCCGCTTCCCAG GGCATGCCTCTGCTCCTTTGCGCAAGCGCGCCGCTTCCCAG < 41bp 0.428905065269975 0.792305528205694 0.39200598 0.3973533 prediction 0.584611056411387 Functional Gain - ATG7 ENSG00000197548 UTR5 Human protein_coding chr3:11314015 chr3:11314019 . . 0 25 hm5C_associated_SNPs_102535 0 0 0 0 1 Cytosol 0.500231643920959 0.500231643921837 0 1.75592873574715e-12 hm5C_site_55680 DeepMRMD:0;iRNA_m5C:1.75592873574715e-12 55681 chr11 117871731 117871731 1 + C A rs141609122 117871727 + 117871707 117871747 41 CGTGCCATCCAGAGTCATCTCAGCCCTGCCTTTCTCTGGAG CGTGCCATCCAGAGTCATCTCAGCACTGCCTTTCTCTGGAG < 41bp 0.565227088277759 0.857486495324195 0.44023055 0.46471652 prediction 0.584518814092871 Functional Gain - IL10RA ENSG00000110324 UTR3 Human protein_coding chr11:117871727 chr11:117871731 . . 0 25 hm5C_associated_SNPs_102536 1 0 0 0 0 nucleoplasm 0.500231643697899 0.500231688604909 0 8.98140191107899e-08 hm5C_site_55681 DeepMRMD:0;iRNA_m5C:8.98140191107899e-08 Inflammatory bowel disease Inflammatory bowel disease 55682 chr5 50685611 50685611 1 + C G LUAD 50685610 + 50685590 50685630 41 CGGACCTGCTACGCCGCAAACCCGCGGCCAGATGCGCTCAT CGGACCTGCTACGCCGCAAACGCGCGGCCAGATGCGCTCAT < 41bp 0.519026960822042 0.811281599027028 0.20685071 0.21535566 prediction 0.584509276409972 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685610 chr5:50685611 nonsynonymous SNV 0.229 2 22 hm5C_associated_SNPs_102537 0 0 0 0 0 exosome 0.500231643913524 0.500231643921093 0 1.51367807177394e-11 hm5C_site_55682 DeepMRMD:0;iRNA_m5C:1.51367807177394e-11 55683 chr4 86863375 86863375 1 + T A LUSC 86863371 + 86863351 86863391 41 GACTGCCAGGCCAGGCTAATCTTGTTAAGGAGCTCCAAGAT GACTGCCAGGCCAGGCTAATCTTGATAAGGAGCTCCAAGAT < 41bp 0.52850103644316 0.820753534269825 0.21147716 0.25296634 prediction 0.584504995653331 Functional Gain - ARHGAP24 ENSG00000138639 CDS Human protein_coding chr4:86863371 chr4:86863375 nonsynonymous SNV 0.580 4 25 hm5C_associated_SNPs_102538 0 0 0 0 1 Cytosol 0.500231645213801 0.500231643921513 0 0 hm5C_site_55683 DeepMRMD:0;iRNA_m5C:0 55684 chr4 84457903 84457903 1 + T A LIHC 84457899 + 84457879 84457919 41 CCGAGATCTACATGAAGATCCTAGTGAAAACTTTAGAGGTG CCGAGATCTACATGAAGATCCTAGAGAAAACTTTAGAGGTG < 41bp 0.517328065482652 0.809543186135164 0.19339782 0.1837824 prediction 0.584430241305024 Functional Gain - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84457899 chr4:84457903 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_102539 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0 4.44089209850063e-16 hm5C_site_55684 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 55685 chr2 176965269 176965269 1 + C A LUSC 176965265 + 176965245 176965285 41 TGCAGGCCTGCCGTGGGGGGCGGCCCCGGGGAGGGCCCGCA TGCAGGCCTGCCGTGGGGGGCGGCACCGGGGAGGGCCCGCA < 41bp 0.596240408675348 0.888453957857285 0.9150319 0.921455 prediction 0.584427098363874 Functional Gain - HOXD12 ENSG00000170178 CDS Human protein_coding chr2:176965265 chr2:176965269 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102540 0 0 0 0 1 unknown 0.500231643921083 0.500231643910401 0.0128462 0 hm5C_site_55685 DeepMRMD:0.0128462;iRNA_m5C:0 55686 chrX 30237576 30237576 1 + C G HNSC 30237575 + 30237555 30237595 41 GAAAGTCCTGGAGTTTTTGGCCAAGGTAAATGGTACCACCC GAAAGTCCTGGAGTTTTTGGCGAAGGTAAATGGTACCACCC < 41bp 0.503964795433671 0.796173736638955 0.48021773 0.8858031 prediction 0.584417882410569 Functional Gain - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30237575 chrX:30237576 synonymous SNV . 0 22 hm5C_associated_SNPs_102541 0 0 0 0 0 exosome 0.500231643921091 0.500231643919304 0.7716062 0 hm5C_site_55686 DeepMRMD:0.7716062;iRNA_m5C:0 55687 chr16 613562 613562 1 + C A BLCA 613558 + 613538 613578 41 ACGCCTAGGCCCCACGCACCCACCCCAGACCGCCCTGGGGA ACGCCTAGGCCCCACGCACCCACCACAGACCGCCCTGGGGA < 41bp 0.605364680698763 0.8975576159482 0.025740743 0.036554456 prediction 0.584385870498873 Functional Gain - PRR35 ENSG00000161992 CDS Human protein_coding chr16:613558 chr16:613562 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_102542 0 0 0 0 0 exosome 0.500231643893991 0.500231644640281 0 1.49257894932475e-09 hm5C_site_55687 DeepMRMD:0;iRNA_m5C:1.49257894932475e-09 55688 chrX 75649513 75649513 1 + C G BRCA 75649512 + 75649492 75649532 41 CCTTAGTGCAGCCCACCGCCCCTGACGGACCGGGAAGCTCC CCTTAGTGCAGCCCACCGCCCGTGACGGACCGGGAAGCTCC < 41bp 0.510843066034766 0.803029829152051 0.0919185 0.33195633 prediction 0.58437352623457 Functional Gain - MAGEE1 ENSG00000198934 CDS Human protein_coding chrX:75649512 chrX:75649513 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_102543 0 0 0 0 0 membrane 0.500231642206721 0.500232124106534 0 9.63799626330086e-07 hm5C_site_55688 DeepMRMD:0;iRNA_m5C:9.63799626330086e-07 55689 chr12 12022444 12022444 1 + T A COAD 12022440 + 12022420 12022460 41 ATTGAACTGTTGCACCGCTCCAGGTCACCTATCACGACAAA ATTGAACTGTTGCACCGCTCCAGGACACCTATCACGACAAA < 41bp 0.512241233403327 0.804417194665995 0.38548684 0.3569078 prediction 0.584351922525336 Functional Gain - ETV6 ENSG00000139083 CDS Human protein_coding chr12:12022440 chr12:12022444 nonsynonymous SNV 0.458 3 25 hm5C_associated_SNPs_102544 0 0 0 0 0 Cytosol 0.500231643875853 0.500231643932826 0 1.13946407864773e-10 hm5C_site_55689 DeepMRMD:0;iRNA_m5C:1.13946407864773e-10 55690 chr6 116879226 116879226 1 + T A SKCM 116879222 + 116879202 116879242 41 GTGAAGACGTCAAACACATCCGCATTCCTTCTTGTCAGGAC GTGAAGACGTCAAACACATCCGCAATCCTTCTTGTCAGGAC < 41bp 0.534504448589988 0.826678625163674 0.03724909 0.056596935 prediction 0.584348353147371 Functional Gain - FAM26D ENSG00000164451 CDS Human protein_coding chr6:116879222 chr6:116879226 nonsynonymous SNV 0.816 4 25 hm5C_associated_SNPs_102545 0 0 0 0 0 nucleus 0.500232017065832 0.50023156252704 0 0 hm5C_site_55690 DeepMRMD:0;iRNA_m5C:0 55691 chr3 12447409 12447409 1 + C G BLCA 12447408 + 12447388 12447428 41 GTTTGGGCGGATGCCACAGGCCGAGAAGGAGAAGCTGTTGG GTTTGGGCGGATGCCACAGGCGGAGAAGGAGAAGCTGTTGG < 41bp 0.496093437985899 0.792172152919079 0.050022185 0.78173125 prediction 0.584344305838157 Functional Gain - PPARG ENSG00000132170 CDS Human protein_coding chr3:12447408 chr3:12447409 synonymous SNV . 0 22 hm5C_associated_SNPs_102546 0 0 1 0 1 Cytosol 0.500231641660669 0.500230868792632 0.5634625 0 hm5C_site_55691 DeepMRMD:0.5634625;iRNA_m5C:0 55692 chr20 44439565 44439565 1 + C A BLCA 44439561 + 44439541 44439581 41 GGAGGACATCCGGGACCTTGCGGCCAGTGATGATTACAGGT GGAGGACATCCGGGACCTTGCGGCAAGTGATGATTACAGGT < 41bp 0.616203232991325 0.908367037605456 0.31058633 0.50074387 prediction 0.584327609228262 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44439561 chr20:44439565 synonymous SNV . 0 25 hm5C_associated_SNPs_102547 0 0 0 0 2 cytosol 0.500231633820555 0.500231639936292 0.00148773999999996 1.22314738337792e-08 hm5C_site_55692 DeepMRMD:0.00148773999999996;iRNA_m5C:1.22314738337792e-08 55693 chr17 48733283 48733283 1 + T G SKCM 48733280 + 48733260 48733300 41 CCTGGGTGCCCTGCATCTACCTGTGGGTCGCCCTGCCCTGC CCTGGGTGCCCTGCATCTACCTGGGGGTCGCCCTGCCCTGC < 41bp 0.608966214307635 0.901105688792273 0.7254298 0.9394765 prediction 0.584278948969276 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48733280 chr17:48733283 nonsynonymous SNV 0.811 3 24 hm5C_associated_SNPs_102548 0 0 1 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643876804 0.4280934 0 hm5C_site_55693 DeepMRMD:0.4280934;iRNA_m5C:0 55694 chr17 21826393 21826393 1 + C A HNSC 21826389 + 21826369 21826409 41 GCTCTGGCCCCTGCTCTGTCCTCCCTCTTACTCTGTCTCCC GCTCTGGCCCCTGCTCTGTCCTCCATCTTACTCTGTCTCCC < 41bp 0.44319056115999 0.792129299685911 0.41730806 0.93318933 prediction 0.584258599371821 Functional Gain - FAM27E5 ENSG00000178130 ncRNA_exonic Human lincRNA chr17:21826389 chr17:21826393 . . 0 25 hm5C_associated_SNPs_102549 0 0 0 0 0 unknown 0.500231647889912 0.500231788398165 0.86637866 2.81016505843112e-07 hm5C_site_55694 DeepMRMD:0.86637866;iRNA_m5C:2.81016505843112e-07 55695 chr5 140627058 140627058 1 + C A STAD 140627054 + 140627034 140627074 41 CTGAGCGAGCGCGACGTGGCCAAGCACAGGCTAGTGGTGCT CTGAGCGAGCGCGACGTGGCCAAGAACAGGCTAGTGGTGCT < 41bp 0.595257752459891 0.88738081690008 0.1541045 0.13576329 prediction 0.584246128880379 Functional Gain - PCDHB15 ENSG00000113248 CDS Human protein_coding chr5:140627054 chr5:140627058 nonsynonymous SNV 0.961 1 25 hm5C_associated_SNPs_102550 0 0 0 0 0 exosome 0.50023164034666 0.500231643646512 0 6.59970567085111e-09 hm5C_site_55695 DeepMRMD:0;iRNA_m5C:6.59970567085111e-09 55696 chr15 41859680 41859680 1 + T G SKCM 41859677 + 41859657 41859697 41 AGCCTCAGGGTGCGCTGTGCCAATGCCTTGGGGCCCTCTCC AGCCTCAGGGTGCGCTGTGCCAAGGCCTTGGGGCCCTCTCC < 41bp 0.392944619530308 0.79211805928123 0.23985344 0.84133446 prediction 0.584236118562459 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41859677 chr15:41859680 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_102551 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.68266892 0 hm5C_site_55696 DeepMRMD:0.68266892;iRNA_m5C:0 55697 chr9 140147586 140147586 1 + C A rs184975054 140147582 + 140147562 140147602 41 GGCAGCCCGAACCCCTGGCCCAGCCGCCTACCACGTGGAGG GGCAGCCCGAACCCCTGGCCCAGCAGCCTACCACGTGGAGG < 41bp 0.410854590284521 0.792113777690737 0.3502656 0.6364218 prediction 0.584227555381474 Functional Gain - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140147582 chr9:140147586 nonsynonymous SNV 0.094 0 25 hm5C_associated_SNPs_102552 0 0 0 0 2 chromatin 0.500231643921084 0.500231643921092 0.2728436 1.77635683940025e-14 hm5C_site_55697 DeepMRMD:0.2728436;iRNA_m5C:1.77635683940025e-14 Diastolic blood pressure 55698 chr10 1061765 1061765 1 + C G rs41294962 1061764 + 1061744 1061784 41 AAGCGGGAAGACTCTGCTCCCCCGTCCTCTGTGGCCCGGAG AAGCGGGAAGACTCTGCTCCCGCGTCCTCTGTGGCCCGGAG < 41bp 0.512286412768054 0.804395051998874 0.106996 0.37896654 prediction 0.58421727846164 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1061764 chr10:1061765 nonsynonymous SNV 0.039 1 22 hm5C_associated_SNPs_102553 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921094 0 3.77475828372553e-15 hm5C_site_55698 DeepMRMD:0;iRNA_m5C:3.77475828372553e-15 55699 chr1 16073524 16073524 1 + C A rs55947911 16073520 + 16073500 16073540 41 TCTGGTGTCTCGTGGGCGTCCGCACCCTGCTTGACCTCTGC TCTGGTGTCTCGTGGGCGTCCGCAACCTGCTTGACCTCTGC < 41bp 0.389399737349558 0.79210073826135 0.21296534 0.42389393 prediction 0.5842014765227 Functional Gain - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16073520 chr1:16073524 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_102554 0 0 0 0 1 exosome 0.500231644211474 0.500231643867983 0 0 hm5C_site_55699 DeepMRMD:0;iRNA_m5C:0 55700 chr11 43471754 43471754 1 + C A UCEC 43471750 + 43471730 43471770 41 ACTTGCATGGGGTTTCCAACCGAGCCAGCCTGCACTACACA ACTTGCATGGGGTTTCCAACCGAGACAGCCTGCACTACACA < 41bp 0.609816321504621 0.901902502310529 0.87540233 0.8939722 prediction 0.584172361611817 Functional Gain - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43471750 chr11:43471754 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102555 0 0 0 0 1 Nucleus 0.500231744732795 0.500231632299801 0.03713974 0 hm5C_site_55700 DeepMRMD:0.03713974;iRNA_m5C:0 55701 chr11 65780325 65780325 1 + C A LIHC 65780321 + 65780301 65780341 41 TGGCCGGCATCAAGTACTTCCTGACGATGGAGATGGGGAGC TGGCCGGCATCAAGTACTTCCTGAAGATGGAGATGGGGAGC < 41bp 0.389666840381283 0.792065792860837 0.13873139 0.23901898 prediction 0.584131585721674 Functional Gain - CST6 ENSG00000175315 CDS Human protein_coding chr11:65780321 chr11:65780325 nonsynonymous SNV 0.332 1 25 hm5C_associated_SNPs_102556 0 0 0 0 2 Cytosol 0.5002329898922 0.500231643216207 0 0 hm5C_site_55701 DeepMRMD:0;iRNA_m5C:0 55702 chr3 46307116 46307116 1 + T G STAD 46307114 + 46307094 46307134 41 TTTGGTGTCATCACCAGCATCGTCACCTGGGGCCTGGCAGT TTTGGTGTCATCACCAGCATCGGCACCTGGGGCCTGGCAGT < 41bp 0.556038624526064 0.848090940408334 0.17418951 0.45246485 prediction 0.584104631764539 Functional Gain - CCR3 ENSG00000183625 CDS Human protein_coding chr3:46307114 chr3:46307116 nonsynonymous SNV 0.496 0 23 hm5C_associated_SNPs_102557 0 0 0 0 0 exosome 0.500231697860193 0.500231643921868 0 0 hm5C_site_55702 DeepMRMD:0;iRNA_m5C:0 55703 chr14 102028158 102028158 1 + T G LUSC 102028155 + 102028135 102028175 41 GCGTGTCCGACGACAACCGCCTGTGCACCCTGGCGTCGCTC GCGTGTCCGACGACAACCGCCTGGGCACCCTGGCGTCGCTC < 41bp 0.596621675617935 0.888666342037147 0.25387225 0.59435165 prediction 0.584089332838425 Functional Gain - DIO3 ENSG00000197406 CDS Human protein_coding chr14:102028155 chr14:102028158 unknown 0.999 2 24 hm5C_associated_SNPs_102558 0 0 0 0 0 Endoplasmic reticulum 0.500231641811751 0.50023164365001 0.1887033 3.67651797894553e-09 hm5C_site_55703 DeepMRMD:0.1887033;iRNA_m5C:3.67651797894553e-09 55704 chr6 116566467 116566467 1 + T G rs76809089 116566464 + 116566444 116566484 41 TTAGAAAACACACTGGTTTTCACTATCTGGTTTACAAACAC TTAGAAAACACACTGGTTTTCACGATCTGGTTTACAAACAC < 41bp 0.517857061632402 0.809862416331849 0.025563508 0.118432224 prediction 0.584010709398895 Functional Gain - NT5DC1 ENSG00000178425 UTR3 Human protein_coding chr6:116566464 chr6:116566467 . . 0 24 hm5C_associated_SNPs_102559 0 0 1 6 0 Cytosol 0.500187798637937 0.500256152382053 0 0.000136707488231247 hm5C_site_55704 DeepMRMD:0;iRNA_m5C:0.000136707488231247 55705 chr16 50733572 50733572 1 + C A HNSC 50733568 + 50733548 50733588 41 CACCTCCTGGGCCAGCCTCTCTCCCACTTGGCCAGGCGCCT CACCTCCTGGGCCAGCCTCTCTCCAACTTGGCCAGGCGCCT < 41bp 0.373285099678328 0.792000097400173 0.1483059 0.9411167 prediction 0.584000194800345 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50733568 chr16:50733572 nonsynonymous SNV 0.757 0 25 hm5C_associated_SNPs_102560 0 0 0 0 0 exosome 0.500231643921092 0.500231643920872 0.8822334 0 hm5C_site_55705 DeepMRMD:0.8822334;iRNA_m5C:0 55706 chr12 111342442 111342442 1 + C A LUSC 111342438 + 111342418 111342458 41 CTGCTGCTGTTGGAGACCTACAGGCGCATCCTGGAAGTGGA CTGCTGCTGTTGGAGACCTACAGGAGCATCCTGGAAGTGGA < 41bp 0.608278656445102 0.900264799677179 0.83111715 0.82977533 prediction 0.583972286464153 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111342438 chr12:111342442 nonsynonymous SNV 0.009 3 25 hm5C_associated_SNPs_102561 0 0 0 0 1 exosome 0.500231534005301 0.500231586902889 0 1.05795177063328e-07 hm5C_site_55706 DeepMRMD:0;iRNA_m5C:1.05795177063328e-07 55707 chr9 130147330 130147330 1 + C A UCEC 130147326 + 130147306 130147346 41 TCTGTGCTTTCCCGTATCTCCTGGCCTTCACCACCGACTCC TCTGTGCTTTCCCGTATCTCCTGGACTTCACCACCGACTCC < 41bp 0.612146743609205 0.904129102871395 0.3597007 0.3498174 prediction 0.58396471852438 Functional Gain - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130147326 chr9:130147330 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102562 0 0 0 0 1 Nucleus 0.500231643751465 0.500231643990059 0 4.77187178660188e-10 hm5C_site_55707 DeepMRMD:0;iRNA_m5C:4.77187178660188e-10 55708 chr19 50028359 50028359 1 + T G rs138667454 50028356 + 50028336 50028376 41 CTTCCTGGAATCTGACCATTCGTTGTCTGCTATGCCCGTCC CTTCCTGGAATCTGACCATTCGTGGTCTGCTATGCCCGTCC < 41bp 0.450369960212895 0.791956885913227 0.16802189 0.9014058 prediction 0.583913771826454 Functional Gain - FCGRT ENSG00000104870 UTR3 Human protein_coding chr19:50028356 chr19:50028359 . . 0 24 hm5C_associated_SNPs_102563 0 0 1 2 0 Endoplasmic reticulum 0.500231643548885 0.500231643920863 0.8028116 7.43955563820009e-10 hm5C_site_55708 DeepMRMD:0.8028116;iRNA_m5C:7.43955563820009e-10 55709 chr4 71346768 71346768 1 + C A LUSC 71346764 + 71346744 71346784 41 GATAAAAATAGCAGTGTGGTCAACCCTACCTTAGTGGCTAC GATAAAAATAGCAGTGTGGTCAACACTACCTTAGTGGCTAC < 41bp 0.415824130307136 0.791953769101035 0.25437707 0.30415058 prediction 0.583907538202069 Functional Gain - MUC7 ENSG00000171195 CDS Human protein_coding chr4:71346764 chr4:71346768 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_102564 0 0 0 0 0 unknown 0.500231643922312 0.500644785267121 0 0.000826282689617042 hm5C_site_55709 DeepMRMD:0;iRNA_m5C:0.000826282689617042 55710 chr16 2203012 2203012 1 + T A COAD 2203008 + 2202988 2203028 41 AGGTGGACTCTGCCCATGAGCGTGTGGTGAAGAGGGAGGAC AGGTGGACTCTGCCCATGAGCGTGAGGTGAAGAGGGAGGAC < 41bp 0.506336359526003 0.798278464712308 0.2964906 0.7337848 prediction 0.583884210372611 Functional Gain - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2203008 chr16:2203012 nonsynonymous SNV 0.950 1 25 hm5C_associated_SNPs_102565 0 0 0 0 2 chromatin 0.500231642960774 0.500231642539679 0.4675696 0 hm5C_site_55710 DeepMRMD:0.4675696;iRNA_m5C:0 55711 chr19 55220369 55220369 1 + C A LUSC 55220365 + 55220345 55220385 41 GCGGGGGAGGTCTGTGGACCCCAGCCTGTGGTTTCTTCCAG GCGGGGGAGGTCTGTGGACCCCAGACTGTGGTTTCTTCCAG < 41bp 0.468600025078158 0.791930317684117 0.0620642 0.19064629 prediction 0.583860635368234 Functional Gain - LILRP2 ENSG00000170858 ncRNA_intronic Human transcribed_processed_pseudogene chr19:55220365 chr19:55220369 . . 0 25 hm5C_associated_SNPs_102566 0 0 0 0 0 unknown 0.500230713943533 0.500231630810429 0 1.83373379192275e-06 hm5C_site_55711 DeepMRMD:0;iRNA_m5C:1.83373379192275e-06 55712 chr9 110068767 110068767 1 + C G rs1805333 110068766 + 110068746 110068786 41 AACTGTGGCTCAGGCTCCAACCCCTGTCCCTGCCTTGGCCC AACTGTGGCTCAGGCTCCAACGCCTGTCCCTGCCTTGGCCC < 41bp 0.489045672048959 0.791925490495683 0.13468874 0.25193915 prediction 0.583850980991366 Functional Gain - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110068766 chr9:110068767 synonymous SNV . 0 22 hm5C_associated_SNPs_102567 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921093 0 6.66133814775094e-16 hm5C_site_55712 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 55713 chr2 209309526 209309526 1 + T A LUAD 209309522 + 209309502 209309542 41 CTACAAATTATTATTGGATCCTGGTGGAAGGTCTCTACCTG CTACAAATTATTATTGGATCCTGGAGGAAGGTCTCTACCTG < 41bp 0.517191590806819 0.809108458359585 0.3026225 0.3012349 prediction 0.583833735105532 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209309522 chr2:209309526 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_102568 0 0 0 0 2 exosome 0.500231643921092 0.500231643921091 0 0 hm5C_site_55713 DeepMRMD:0;iRNA_m5C:0 55714 chr14 62536499 62536499 1 + C A READ 62536495 + 62536475 62536515 41 ATTCAGCCGTTCGTTGTTGACACACGGAGAAGATGGCACAG ATTCAGCCGTTCGTTGTTGACACAAGGAGAAGATGGCACAG < 41bp 0.61521448833844 0.907108696758369 0.3544349 0.37606257 prediction 0.583788416839857 Functional Gain - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62536495 chr14:62536499 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102569 0 0 0 0 1 exosome 0.500231621249729 0.500231643920937 0 4.53424142676795e-08 hm5C_site_55714 DeepMRMD:0;iRNA_m5C:4.53424142676795e-08 55715 chr3 57743438 57743438 1 + T G UCEC 57743436 + 57743416 57743456 41 ACTCGCACCCGTTTCAGGAGCGTCATGTCTACCTGGACGAG ACTCGCACCCGTTTCAGGAGCGGCATGTCTACCTGGACGAG < 41bp 0.522395686651719 0.814247014626553 0.109089285 0.22698784 prediction 0.583702655949668 Functional Gain - SLMAP ENSG00000163681 CDS Human protein_coding chr3:57743436 chr3:57743438 synonymous SNV . 0 23 hm5C_associated_SNPs_102570 0 0 1 0 0 Ribosome 0.500231643929011 0.500231643923027 0 0 hm5C_site_55715 DeepMRMD:0;iRNA_m5C:0 55716 chr3 32995174 32995174 1 + T A LUSC 32995170 + 32995150 32995190 41 TCAACCTTGCCATCTCGGATCTGCTCTTCGTGTTTTCCCTC TCAACCTTGCCATCTCGGATCTGCACTTCGTGTTTTCCCTC < 41bp 0.470902860241786 0.791841463781702 0.12085137 0.23465589 prediction 0.583682927563404 Functional Gain - CCR4 ENSG00000183813 CDS Human protein_coding chr3:32995170 chr3:32995174 nonsynonymous SNV 0.977 4 25 hm5C_associated_SNPs_102571 0 0 0 0 0 exosome 0.500231643708493 0.500231643226137 0 0 hm5C_site_55716 DeepMRMD:0;iRNA_m5C:0 55717 chr12 247854 247854 1 + C A LUAD 247850 + 247830 247870 41 ACCAGCTCCACCAGGCCCTGCAGGCGGCCGCGGGGCCCCCA ACCAGCTCCACCAGGCCCTGCAGGAGGCCGCGGGGCCCCCA < 41bp 0.603467464837879 0.89530700657391 0.9016973 0.9046916 prediction 0.583679083472061 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:247850 chr12:247854 nonsynonymous SNV 0.095 0 25 hm5C_associated_SNPs_102572 0 0 0 0 0 nucleolus 0.500231643921094 0.50023164452343 0.00598860000000001 1.20467258390988e-09 hm5C_site_55717 DeepMRMD:0.00598860000000001;iRNA_m5C:1.20467258390988e-09 55718 chr17 34854242 34854242 1 + C A MESO 34854238 + 34854218 34854258 41 TTTCCTCTGAAAGCTGCCTACACCCATAGCCGTATTGGCCA TTTCCTCTGAAAGCTGCCTACACCAATAGCCGTATTGGCCA < 41bp 0.617466268908097 0.909304226971907 0.022447646 0.09730011 prediction 0.583675916127621 Functional Gain - MYO19 ENSG00000141140 CDS Human other chr17:34854238 chr17:34854242 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_102573 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643856953 0 0 hm5C_site_55718 DeepMRMD:0;iRNA_m5C:0 55719 chr1 19981647 19981647 1 + C G LUAD 19981646 + 19981626 19981666 41 TGCGAAGCCAAGAACATCACCCAGATCGTGGGCCACAGCGG TGCGAAGCCAAGAACATCACCGAGATCGTGGGCCACAGCGG < 41bp 0.496666773951091 0.791834960356468 0.017575294 0.2718367 prediction 0.583669920712937 Functional Gain - MINOS1-NBL1;NBL1 ENSG00000158747;ENSG00000270136 CDS Human other chr1:19981646 chr1:19981647 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_102574 0 0 1 0 1 unknown 0.500231651224925 0.500232204917838 0 1.10738582570491e-06 hm5C_site_55719 DeepMRMD:0;iRNA_m5C:1.10738582570491e-06 55720 chr15 85164391 85164391 1 + T A SARC 85164387 + 85164367 85164407 41 GCTTCAGCAGGAGTCCCAACCTCATTGCACATCAGCGCACC GCTTCAGCAGGAGTCCCAACCTCAATGCACATCAGCGCACC < 41bp 0.550812052928865 0.842631122121102 0.16224608 0.7600942 prediction 0.583638138384474 Functional Gain - ZSCAN2 ENSG00000176371 CDS Human protein_coding chr15:85164387 chr15:85164391 nonsynonymous SNV 0.830 1 25 hm5C_associated_SNPs_102575 0 0 0 0 0 Nucleus 0.500231643925114 0.50023164392231 0.5201884 0 hm5C_site_55720 DeepMRMD:0.5201884;iRNA_m5C:0 55721 chr21 37518652 37518652 1 + T G SKCM 37518650 + 37518630 37518670 41 TGACAGGATTCTGGTGAATGCGTGCTGCCCAGGACCAGTGA TGACAGGATTCTGGTGAATGCGGGCTGCCCAGGACCAGTGA < 41bp 0.533832736089802 0.825607612291239 0.37858516 0.88733184 prediction 0.583549752402874 Functional Gain - CBR3 ENSG00000159231 CDS Human protein_coding chr21:37518650 chr21:37518652 nonsynonymous SNV 0.862 4 23 hm5C_associated_SNPs_102576 0 0 1 0 0 exosome 0.500225564926318 0.500231643921085 0.77466368 1.21579895346891e-05 hm5C_site_55721 DeepMRMD:0.77466368;iRNA_m5C:1.21579895346891e-05 55722 chr17 65029264 65029264 1 + C A rs3803815 65029260 + 65029240 65029280 41 CGGGCCTTCTCAGCCTTCTCCCCGCGGCCAGCTGGGTCTCC CGGGCCTTCTCAGCCTTCTCCCCGAGGCCAGCTGGGTCTCC < 41bp 0.54185314607488 0.833619531308509 0.91155005 0.9152183 prediction 0.583532770467257 Functional Gain - CACNG4 ENSG00000265664 ncRNA_intronic Human antisense chr17:65029260 chr17:65029264 . . 0 25 hm5C_associated_SNPs_102577 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.00733650000000008 0 hm5C_site_55722 DeepMRMD:0.00733650000000008;iRNA_m5C:0 55723 chr3 52836783 52836783 1 + T A PRAD 52836779 + 52836759 52836799 41 TCTTCGGGAATTACATTGAGCGGCTCTGGGCCTACCTCACC TCTTCGGGAATTACATTGAGCGGCACTGGGCCTACCTCACC < 41bp 0.533490246447107 0.825253509941885 0.3060792 0.39977574 prediction 0.583526526989556 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52836779 chr3:52836783 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_102578 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_55723 DeepMRMD:0;iRNA_m5C:0 55724 chr11 14280831 14280831 1 + T A COAD 14280827 + 14280807 14280847 41 TTCACTCGGTGTGTTGCAGACGGCTCCACCTGCACCATGTC TTCACTCGGTGTGTTGCAGACGGCACCACCTGCACCATGTC < 41bp 0.48863721435823 0.791751569806229 0.22719908 0.33159256 prediction 0.583503139612457 Functional Gain - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14280827 chr11:14280831 . 1.000 1 25 hm5C_associated_SNPs_102579 0 0 0 0 1 chromatin 0.500231319304973 0.50023151555225 0 3.92494554857237e-07 hm5C_site_55724 DeepMRMD:0;iRNA_m5C:3.92494554857237e-07 55725 chr19 58868906 58868906 1 + C A rs148878757 58868902 + 58868882 58868922 41 GGCCCCCCAGCCTCCAGACACAGCCCCCTCAGAGAGGCCCC GGCCCCCCAGCCTCCAGACACAGCACCCTCAGAGAGGCCCC < 41bp 0.419227509086708 0.791726884874671 0.15475056 0.18261647 prediction 0.583453769749342 Functional Gain - ZNF497 ENSG00000174586 CDS Human protein_coding chr19:58868902 chr19:58868906 synonymous SNV . 0 25 hm5C_associated_SNPs_102580 0 0 0 0 0 Nucleus 0.500231643921088 0.500231643921092 0 7.99360577730113e-15 hm5C_site_55725 DeepMRMD:0;iRNA_m5C:7.99360577730113e-15 55726 chr3 169540651 169540651 1 + T G UCEC 169540649 + 169540629 169540669 41 TCCTGGACCTAAGCCAGAACCATCTGCACCACTGCCCGCTG TCCTGGACCTAAGCCAGAACCAGCTGCACCACTGCCCGCTG < 41bp 0.547816653953554 0.839537632400985 0.36262107 0.9042829 prediction 0.583441956894861 Functional Gain - LRRIQ4 ENSG00000188306 CDS Human protein_coding chr3:169540649 chr3:169540651 nonsynonymous SNV 0.018 0 23 hm5C_associated_SNPs_102581 0 0 0 0 1 exosome 0.500231657140522 0.497669707543678 0.8085658 0 hm5C_site_55726 DeepMRMD:0.8085658;iRNA_m5C:0 55727 chr15 102292811 102292811 1 + C A CESC 102292807 + 102292787 102292827 41 GAGCTGCTGTCCAACCTGCACTCGCGTGGGAACGAGAAGAC GAGCTGCTGTCCAACCTGCACTCGAGTGGGAACGAGAAGAC < 41bp 0.432429619986059 0.791700310324626 0.050651073 0.12517029 prediction 0.583400620649251 Functional Gain - LOC100128108;OR4F6 ENSG00000259660 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102292807 chr15:102292811 . . 0 25 hm5C_associated_SNPs_102582 0 0 0 0 0 unknown 0.500231503384198 0.500225803089791 0 0 hm5C_site_55727 DeepMRMD:0;iRNA_m5C:0 55728 chr13 51854621 51854621 1 + C A ESCA 51854617 + 51854597 51854637 41 GCATAAGAAGTTTCCTAAACCTGGCAGAGTACATCATGCCT GCATAAGAAGTTTCCTAAACCTGGAAGAGTACATCATGCCT < 41bp 0.395409672671591 0.791700284890159 0.25552037 0.20832953 prediction 0.583400569780318 Functional Gain - FAM124A ENSG00000150510 CDS Human protein_coding chr13:51854617 chr13:51854621 synonymous SNV . 0 25 hm5C_associated_SNPs_102583 0 0 0 0 1 exosome 0.500231644143449 0.500231643975666 0 0 hm5C_site_55728 DeepMRMD:0;iRNA_m5C:0 Ischemic stroke 55729 chr17 4389545 4389545 1 + G C UCEC 4389546 - 4389526 4389566 41 TGAAGTGCCTCTGCCGTCCCCCGGCATCTGGGCACCACCAC TGAAGTGCCTCTGCCGTCCCCGGGCATCTGGGCACCACCAC < 41bp 0.491315625697097 0.791700090672439 0.18112311 0.83135545 prediction 0.583400181344878 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4389546 chr17:4389545 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_102584 0 0 0 0 0 exosome 0.50023164393076 0.500231647966705 0.6627109 8.07188937912429e-09 hm5C_site_55729 DeepMRMD:0.6627109;iRNA_m5C:8.07188937912429e-09 55730 chrX 150349627 150349627 1 + C A LUAD 150349623 + 150349603 150349643 41 CACTGCTGACTATCCCAAGCCTGCCACTACCAGCCACCCTA CACTGCTGACTATCCCAAGCCTGCAACTACCAGCCACCCTA < 41bp 0.388760546093871 0.791684190330031 0.033120364 0.08020574 prediction 0.583368380660062 Functional Gain - GPR50 ENSG00000102195 CDS Human protein_coding chrX:150349623 chrX:150349627 synonymous SNV . 0 25 hm5C_associated_SNPs_102585 0 0 0 0 0 exosome 0.500231643921093 0.500231643413908 0 0 hm5C_site_55730 DeepMRMD:0;iRNA_m5C:0 55731 chr2 106497999 106497999 1 + T A STAD 106497995 + 106497975 106498015 41 GTCATGGAGAAGTGCAGCGACGGTTGGTGGCGGGGCAGCTA GTCATGGAGAAGTGCAGCGACGGTAGGTGGCGGGGCAGCTA < 41bp 0.513298088819747 0.804971790909811 0.2779613 0.563436 prediction 0.583347404180128 Functional Gain - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106497995 chr2:106497999 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102586 0 0 0 0 0 Ribosome 0.500231643920965 0.500231643920869 0.126872 0 hm5C_site_55731 DeepMRMD:0.126872;iRNA_m5C:0 55732 chr6 27925448 27925448 1 + T G COAD 27925445 + 27925425 27925465 41 TGCACCAGAGACTCTGCCTCCAGTTGGCAGCTGCATCCTGG TGCACCAGAGACTCTGCCTCCAGGTGGCAGCTGCATCCTGG < 41bp 0.584433549935711 0.876102170372113 0.26360106 0.94499195 prediction 0.583337240872804 Functional Gain - OR2B6 ENSG00000124657 CDS Human protein_coding chr6:27925445 chr6:27925448 nonsynonymous SNV 0.667 1 24 hm5C_associated_SNPs_102587 0 0 0 0 0 nucleolus 0.500231643921111 0.500231734620097 0.8899839 1.81397972642827e-07 hm5C_site_55732 DeepMRMD:0.8899839;iRNA_m5C:1.81397972642827e-07 55733 chrX 140984732 140984732 1 + C A LUAD 140984728 + 140984708 140984748 41 CCAGAGTCCTCCTGAGATTCCTCCCCAGGGTCCTCCCAAGA CCAGAGTCCTCCTGAGATTCCTCCACAGGGTCCTCCCAAGA < 41bp 0.371210043442957 0.791657152911022 0.087545395 0.9464033 prediction 0.583314305822044 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140984728 chrX:140984732 synonymous SNV . 0 25 hm5C_associated_SNPs_102588 0 0 0 0 1 exosome 0.500231643921092 0.500231623355158 0.8928066 0 hm5C_site_55733 DeepMRMD:0.8928066;iRNA_m5C:0 55734 chr4 154216755 154216755 1 + C A rs116558260 154216751 + 154216731 154216771 41 TGCCTCAGAGACAGTGGCCACGGGCGAGGGGCTGCGGCAGA TGCCTCAGAGACAGTGGCCACGGGAGAGGGGCTGCGGCAGA < 41bp 0.602617266654568 0.894270123996566 0.6296579 0.8534943 prediction 0.583305714683996 Functional Gain - TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154216751 chr4:154216755 synonymous SNV . 0 25 hm5C_associated_SNPs_102589 0 0 0 0 0 Ribosome 0.500231643921093 0.50023164392095 0.4476728 0 hm5C_site_55734 DeepMRMD:0.4476728;iRNA_m5C:0 55735 chr2 73900065 73900065 1 + T G rs146950422 73900062 + 73900042 73900082 41 GACCAAGCCGTGGAGGGAGCCACTGTGGGAGCGGAACTGGC GACCAAGCCGTGGAGGGAGCCACGGTGGGAGCGGAACTGGC < 41bp 0.447126869208637 0.791648512275944 0.82112896 0.860003 prediction 0.583297024551888 Functional Gain - ALMS1P1 ENSG00000163016 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:73900062 chr2:73900065 . . 0 24 hm5C_associated_SNPs_102590 0 0 0 0 0 unknown 0.500231643919651 0.500231690073678 0.0777480799999999 9.23080538672849e-08 hm5C_site_55735 DeepMRMD:0.0777480799999999;iRNA_m5C:9.23080538672849e-08 55736 chr10 45938873 45938873 1 + C A UCEC 45938869 + 45938849 45938889 41 CGCCCCCTGAGCCAGGTTCACGGCCGAGGTGGTAGACATCT CGCCCCCTGAGCCAGGTTCACGGCAGAGGTGGTAGACATCT < 41bp 0.614030932809717 0.905679438772949 0.27351904 0.4021406 prediction 0.583297011926464 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938869 chr10:45938873 synonymous SNV . 0 25 hm5C_associated_SNPs_102591 0 0 1 0 1 Cytosol 0.500231643921688 0.500231643921093 0 0 hm5C_site_55736 DeepMRMD:0;iRNA_m5C:0 55737 chr7 121944301 121944301 1 + G T COAD 121944305 - 121944285 121944325 41 TACCCAAGGGGGAACCCAAGCACTCTCTGCATCTCAACTCG TACCCAAGGGGGAACCCAAGCACTATCTGCATCTCAACTCG < 41bp 0.397677073350698 0.791646917640163 0.22247088 0.21527523 prediction 0.583293835280326 Functional Gain - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121944305 chr7:121944301 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_102592 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55737 DeepMRMD:0;iRNA_m5C:0 55738 chr11 60482521 60482521 1 + C A UCEC 60482517 + 60482497 60482537 41 CCTGGAATGGCGATTTCTGGCGTGCTGCTGGTCTTCTGCCT CCTGGAATGGCGATTTCTGGCGTGATGCTGGTCTTCTGCCT < 41bp 0.596507084251247 0.888153798160133 0.46627694 0.7879798 prediction 0.583293427817773 Functional Gain - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60482517 chr11:60482521 nonsynonymous SNV 0.019 1 25 hm5C_associated_SNPs_102593 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643920497 0.5759596 0 hm5C_site_55738 DeepMRMD:0.5759596;iRNA_m5C:0 55739 chr12 120531623 120531623 1 + T G rs568737529 120531620 + 120531600 120531640 41 AGGCCCTGTCCCCCTGTCGCCACTGCTCTCCCTCCCAGCCT AGGCCCTGTCCCCCTGTCGCCACGGCTCTCCCTCCCAGCCT < 41bp 0.583013901444945 0.874655979097485 0.17536664 0.8575007 prediction 0.58328415530508 Functional Gain - BICDL1 ENSG00000135127 UTR3 Human protein_coding chr12:120531620 chr12:120531623 . . 0 24 hm5C_associated_SNPs_102594 0 0 1 0 0 chromatin 0.500231645305212 0.500231493409288 0.7150014 0 hm5C_site_55739 DeepMRMD:0.7150014;iRNA_m5C:0 55740 chr13 103504506 103504506 1 + C G DLBC 103504505 + 103504485 103504525 41 AACCAAGCACTTAAAGGAGTCCGGGATCGCCATGGGAACTC AACCAAGCACTTAAAGGAGTCGGGGATCGCCATGGGAACTC < 41bp 0.513765588861504 0.805407375426848 0.123099595 0.5476533 prediction 0.583283573130689 Functional Gain - BIVM-ERCC5;ERCC5 ENSG00000134899;ENSG00000270181 CDS Human other chr13:103504505 chr13:103504506 nonsynonymous SNV 0.727 4 22 hm5C_associated_SNPs_102595 0 0 1 1 0 unknown 0.500231643921094 0.500231643921093 0.0953066 0 hm5C_site_55740 DeepMRMD:0.0953066;iRNA_m5C:0 55741 chr14 100376629 100376629 1 + T G HNSC 100376626 + 100376606 100376646 41 TGTGTGACTTTCTCTGAAAACGGTGACACCATTACTGGAGA TGTGTGACTTTCTCTGAAAACGGGGACACCATTACTGGAGA < 41bp 0.412734410855198 0.791639998069613 0.45541736 0.92929256 prediction 0.583279996139227 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100376626 chr14:100376629 synonymous SNV . 0 24 hm5C_associated_SNPs_102596 0 0 0 0 2 Nucleus 0.500231767124404 0.500231643920948 0.85858512 0 hm5C_site_55741 DeepMRMD:0.85858512;iRNA_m5C:0 55742 chrX 153609727 153609727 1 + C A rs782157633 153609723 + 153609703 153609743 41 GCTTGCTCCCCCTGCCTTGTCCCACCAGGGAGGCAGCAGAC GCTTGCTCCCCCTGCCTTGTCCCAACAGGGAGGCAGCAGAC < 41bp 0.411187342980038 0.791633975578363 0.018374115 0.04216814 prediction 0.583267951156726 Functional Gain - EMD ENSG00000102119 UTR3 Human protein_coding chrX:153609723 chrX:153609727 . . 0 25 hm5C_associated_SNPs_102597 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55742 DeepMRMD:0;iRNA_m5C:0 55743 chr10 119015014 119015014 1 + C A COAD 119015010 + 119014990 119015030 41 CTATTCAGCTCTTTGTGCTCCAGCCGTCCCGGGTGCAGCCA CTATTCAGCTCTTTGTGCTCCAGCAGTCCCGGGTGCAGCCA < 41bp 0.382323662339904 0.791624616631974 0.47493535 0.5610589 prediction 0.583249233263948 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119015010 chr10:119015014 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_102598 0 0 0 0 3 nucleus 0.500231643936587 0.500231639099584 0.1221178 0 hm5C_site_55743 DeepMRMD:0.1221178;iRNA_m5C:0 55744 chr16 31500246 31500246 1 + C G SKCM 31500245 + 31500225 31500265 41 AGTGTCGGTGGCCTGGCTTCCCGTGGTGCAGGCGGCACAGG AGTGTCGGTGGCCTGGCTTCCGGTGGTGCAGGCGGCACAGG < 41bp 0.514502571188617 0.806115484995808 0.2731902 0.8375054 prediction 0.583225827614382 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500245 chr16:31500246 synonymous SNV . 0 22 hm5C_associated_SNPs_102599 0 0 0 0 1 exosome 0.500231643858292 0.500231643921166 0.6750108 1.25747856571934e-10 hm5C_site_55744 DeepMRMD:0.6750108;iRNA_m5C:1.25747856571934e-10 55745 chr10 119013575 119013575 1 + C A LUSC 119013571 + 119013551 119013591 41 CTCGGCAGTGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGC CTCGGCAGTGTTTGCCTTCTCCAGAAGCTATGCCTTCCTGC < 41bp 0.480468456944182 0.791612233370174 0.45654872 0.90621185 prediction 0.583224466740349 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119013571 chr10:119013575 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_102600 0 0 0 0 1 nucleus 0.500231646243098 0.500231643928548 0.8124237 0 hm5C_site_55745 DeepMRMD:0.8124237;iRNA_m5C:0 55746 chr13 103451733 103451733 1 + T G rs112167466 103451730 + 103451710 103451750 41 GCCGGGCACCGCAGCATCCTCGCTCGCTCCGATGGGACGAG GCCGGGCACCGCAGCATCCTCGCGCGCTCCGATGGGACGAG < 41bp 0.470265882397727 0.791597259696548 0.19687608 0.56777024 prediction 0.583194519393096 Functional Gain - BIVM ENSG00000134897 UTR5 Human protein_coding chr13:103451730 chr13:103451733 . . 0 24 hm5C_associated_SNPs_102601 0 0 1 0 0 Ribosome 0.500231697641463 0.500231968464967 0.13554048 5.41647009244528e-07 hm5C_site_55746 DeepMRMD:0.13554048;iRNA_m5C:5.41647009244528e-07 55747 chr6 26508825 26508825 1 + C A LUAD 26508821 + 26508801 26508841 41 TGGAAGATTCACGTCAGAAACTGCCTGAGAAAACAGAGAGA TGGAAGATTCACGTCAGAAACTGCATGAGAAAACAGAGAGA < 41bp 0.403852198926034 0.791596630024556 0.14786732 0.19180298 prediction 0.583193260049112 Functional Gain - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26508821 chr6:26508825 nonsynonymous SNV 0.347 3 25 hm5C_associated_SNPs_102602 0 0 0 0 1 nucleoplasm 0.500231641163816 0.500231627884034 0 0 hm5C_site_55747 DeepMRMD:0;iRNA_m5C:0 55748 chr1 35260113 35260113 1 + C A UCEC 35260109 + 35260089 35260129 41 ACCTGGGCCATGTCATTTACCTGTCTCGGCGAGAAGAGCGG ACCTGGGCCATGTCATTTACCTGTATCGGCGAGAAGAGCGG < 41bp 0.390472625153283 0.791596246279191 0.033627123 0.03847918 prediction 0.583192492558382 Functional Gain - GJA4 ENSG00000187513 CDS Human protein_coding chr1:35260109 chr1:35260113 nonsynonymous SNV 0.990 3 25 hm5C_associated_SNPs_102603 0 0 0 0 0 cytosol 0.50023164392051 0.500231643921092 0 1.16506804204164e-12 hm5C_site_55748 DeepMRMD:0;iRNA_m5C:1.16506804204164e-12 55749 chr10 118385573 118385573 1 + C A LUSC 118385569 + 118385549 118385589 41 GGCGGAGGACAGCTGGCCATCGGACATGTGCAAGGTAGGGC GGCGGAGGACAGCTGGCCATCGGAAATGTGCAAGGTAGGGC < 41bp 0.45101986627602 0.791574656611642 0.5316717 0.7123611 prediction 0.583149313223284 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118385569 chr10:118385573 nonsynonymous SNV 0.964 2 25 hm5C_associated_SNPs_102604 0 0 0 0 1 unknown 0.500231644021577 0.500231643920511 0.3613788 0 hm5C_site_55749 DeepMRMD:0.3613788;iRNA_m5C:0 55750 chr19 33794113 33794113 1 + T G rs573384982 33794111 + 33794091 33794131 41 CCCGCGGGGAGCGGAGGCGGCCTCGGCCCGGGAGCCTGGAG CCCGCGGGGAGCGGAGGCGGCCGCGGCCCGGGAGCCTGGAG < 41bp 0.549724397740529 0.841291911066044 0.8594155 0.89919865 prediction 0.583135026651031 Functional Gain - CEBPA-AS1 ENSG00000178863;ENSG00000267296 ncRNA_exonic Human other chr19:33794111 chr19:33794113 . . 0 23 hm5C_associated_SNPs_102605 0 0 0 0 0 unknown 0.500231643921095 0.500231643928078 0.0795663 1.39659395159697e-11 hm5C_site_55750 DeepMRMD:0.0795663;iRNA_m5C:1.39659395159697e-11 55751 chr8 66989096 66989096 1 + C A STAD 66989092 + 66989072 66989112 41 TAACACCTACTTCATGCTGTCGAGCTGGTGGGCAAAGGTGA TAACACCTACTTCATGCTGTCGAGATGGTGGGCAAAGGTGA < 41bp 0.403856428606805 0.791559009687484 0.30257702 0.36717916 prediction 0.583118019374968 Functional Gain - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66989092 chr8:66989096 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_102606 0 0 0 0 1 exosome 0.500150798068405 0.500187759127861 0 7.39221189109962e-05 hm5C_site_55751 DeepMRMD:0;iRNA_m5C:7.39221189109962e-05 55752 chr10 3143174 3143174 1 + T G rs190906331 3143172 + 3143152 3143192 41 GGTCACACCGCTTCCCTTGTCCTGGCCGGCATGCTCTGGTG GGTCACACCGCTTCCCTTGTCCGGGCCGGCATGCTCTGGTG < 41bp 0.448820808778818 0.791556910409763 0.13009128 0.8391825 prediction 0.583113820819526 Functional Gain - PFKP ENSG00000067057 CDS Human protein_coding chr10:3143172 chr10:3143174 synonymous SNV . 0 23 hm5C_associated_SNPs_102607 0 0 1 0 2 Nucleus 0.50023164392078 0.50023164391591 0.678365 0 hm5C_site_55752 DeepMRMD:0.678365;iRNA_m5C:0 55753 chr9 130442503 130442503 1 + T G UCEC 130442501 + 130442481 130442521 41 TCTACCCGTTCCTCTGCCTCCTTCAGCACCACCGCCGTCAG TCTACCCGTTCCTCTGCCTCCTGCAGCACCACCGCCGTCAG < 41bp 0.546900412810725 0.838435010059057 0.07483736 0.151936 prediction 0.583069194496663 Functional Gain - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130442501 chr9:130442503 nonsynonymous SNV 0.521 1 23 hm5C_associated_SNPs_102608 0 0 1 0 2 Cytosol 0.500231643921076 0.500231643921091 0 3.01980662698043e-14 hm5C_site_55753 DeepMRMD:0;iRNA_m5C:3.01980662698043e-14 55754 chr8 128428335 128428335 1 + A C LUAD 128428338 - 128428318 128428358 41 CCACTCCAACCTGAGGCCCACAGTACGCCATCCCCCCACAT CCACTCCAACCTGAGGCCCACAGGACGCCATCCCCCCACAT < 41bp 0.423703489178805 0.791526342145887 0.07264066 0.8676342 prediction 0.583052684291775 Functional Gain - POU5F1B ENSG00000212993 CDS Human protein_coding chr8:128428338 chr8:128428335 nonsynonymous SNV 0.009 0 24 hm5C_associated_SNPs_102609 0 0 0 0 0 exosome 0.500231643921087 0.500231643795133 0.7352684 0 hm5C_site_55754 DeepMRMD:0.7352684;iRNA_m5C:0 55755 chr20 362067 362067 1 + C A rs7260693 362063 + 362043 362083 41 GGCCCCGCGGAGCGTGGGGTCGCCCGAGTTGGGCTGGGGAA GGCCCCGCGGAGCGTGGGGTCGCCAGAGTTGGGCTGGGGAA < 41bp 0.457257085955925 0.791526317060521 0.76999664 0.9131558 prediction 0.583052634121043 Functional Gain - TRIB3 ENSG00000101255 UTR5 Human protein_coding chr20:362063 chr20:362067 . . 0 25 hm5C_associated_SNPs_102610 0 0 1 0 1 Ribosome 0.500231643921092 0.500227409833526 0.28631832 0 hm5C_site_55755 DeepMRMD:0.28631832;iRNA_m5C:0 55756 chr19 7533767 7533767 1 + T G rs10405143 7533765 + 7533745 7533785 41 GGGAAGGGCTGGAGGGCCCTCGTGTGAGCATGCTGCCATCC GGGAAGGGCTGGAGGGCCCTCGGGTGAGCATGCTGCCATCC < 41bp 0.56901799431273 0.860541803527252 0.40340072 0.9077765 prediction 0.583047618429044 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7533765 chr19:7533767 synonymous SNV . 0 23 hm5C_associated_SNPs_102611 0 0 0 0 1 Cytosol 0.500231643969994 0.500231643921091 0.815553 0 hm5C_site_55756 DeepMRMD:0.815553;iRNA_m5C:0 55757 chr3 51977385 51977385 1 + C G rs61729070 51977384 + 51977364 51977404 41 GGACAGCCATGGCTCCAAAGCCGAAGCCCTGGGTACAGACT GGACAGCCATGGCTCCAAAGCGGAAGCCCTGGGTACAGACT < 41bp 0.50210680824152 0.793627591696386 0.86768526 0.9241563 prediction 0.583041566909732 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51977384 chr3:51977385 nonsynonymous SNV 0.016 0 22 hm5C_associated_SNPs_102612 0 0 0 0 2 nucleus 0.500231643921092 0.500231643921092 0.11294208 1.11022302462516e-15 hm5C_site_55757 DeepMRMD:0.11294208;iRNA_m5C:1.11022302462516e-15 55758 chr19 1533972 1533972 1 + C A rs11084897 1533968 + 1533948 1533988 41 CCTGTGCCACCTGCTGGACCCGGCCTCTGCCTCCTGCGCTT CCTGTGCCACCTGCTGGACCCGGCATCTGCCTCCTGCGCTT < 41bp 0.606215850819147 0.897721534795409 0.25705665 0.5617325 prediction 0.583011367952524 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1533968 chr19:1533972 nonsynonymous SNV 0.018 0 25 hm5C_associated_SNPs_102613 0 0 1 0 2 exosome 0.500231643921093 0.500231644005563 0.123465 1.68941305389581e-10 hm5C_site_55758 DeepMRMD:0.123465;iRNA_m5C:1.68941305389581e-10 55759 chr20 58564072 58564072 1 + C A COAD 58564068 + 58564048 58564088 41 TCAGCCGCCAAGGAAGGCAGCAGCCAGCGCCACTGTGAGTG TCAGCCGCCAAGGAAGGCAGCAGCAAGCGCCACTGTGAGTG < 41bp 0.39286786980968 0.791498425818646 0.3023666 0.33556205 prediction 0.582996851637292 Functional Gain - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58564068 chr20:58564072 synonymous SNV . 0 25 hm5C_associated_SNPs_102614 0 0 0 0 0 nucleoplasm 0.50023164437553 0.500231576223512 0 0 hm5C_site_55759 DeepMRMD:0;iRNA_m5C:0 55760 chrX 144905556 144905556 1 + T G LUAD 144905554 + 144905534 144905574 41 TGGGACTGTACCTGTGACATCATGGGGCTGAAAGACTGGAC TGGGACTGTACCTGTGACATCAGGGGGCTGAAAGACTGGAC < 41bp 0.531704736283986 0.823192841352033 0.47162428 0.9294294 prediction 0.582976210136094 Functional Gain - SLITRK2 ENSG00000185985 CDS Human protein_coding chrX:144905554 chrX:144905556 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_102615 0 0 0 0 0 Cytosol 0.500231643934512 0.500231643921092 0.8588588 0 hm5C_site_55760 DeepMRMD:0.8588588;iRNA_m5C:0 55761 chr15 74166098 74166098 1 + C A COAD 74166094 + 74166074 74166114 41 CAGCCTCTCTGCCAGACAGTCAGCCTCCTTCATCCTGGTGC CAGCCTCTCTGCCAGACAGTCAGCATCCTTCATCCTGGTGC < 41bp 0.39598270575201 0.791485298766039 0.42840648 0.33991516 prediction 0.582970597532079 Functional Gain - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74166094 chr15:74166098 synonymous SNV . 0 25 hm5C_associated_SNPs_102616 0 0 0 0 1 exosome 0.50023167200644 0.500231009180575 0 0 hm5C_site_55761 DeepMRMD:0;iRNA_m5C:0 55762 chr9 136508685 136508685 1 + C A UCS 136508681 + 136508661 136508701 41 CGCCTCAACTACTGCCGCCACGTGCTGGCCGCCTGGGCCCT CGCCTCAACTACTGCCGCCACGTGATGGCCGCCTGGGCCCT < 41bp 0.390009318505437 0.791477189091744 0.06475943 0.15548593 prediction 0.582954378183488 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136508681 chr9:136508685 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_102617 0 0 0 0 1 cytosol 0.500232302750632 0.500231634415462 0 0 hm5C_site_55762 DeepMRMD:0;iRNA_m5C:0 55763 chr22 40060895 40060895 1 + T A LUAD 40060891 + 40060871 40060911 41 CCAAGATCTTGGGGGTCCTCCGAGTCTTGCGGCTCCTGCGC CCAAGATCTTGGGGGTCCTCCGAGACTTGCGGCTCCTGCGC < 41bp 0.510376728570019 0.801834861180112 0.94374806 0.94289815 prediction 0.582916265220186 Functional Gain - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40060891 chr22:40060895 nonsynonymous SNV 0.975 5 25 hm5C_associated_SNPs_102618 0 0 0 0 1 Endoplasmic reticulum 0.500231645250608 0.500231651460951 0 1.24206855911524e-08 hm5C_site_55763 DeepMRMD:0;iRNA_m5C:1.24206855911524e-08 55764 chr19 57888673 57888673 1 + C A UCEC 57888669 + 57888649 57888689 41 TGGCTGAGCATGACGGAACACACCCCGAGCAGGGACTGTAC TGGCTGAGCATGACGGAACACACCACGAGCAGGGACTGTAC < 41bp 0.611883768719962 0.903329665361547 0.04215604 0.08428103 prediction 0.582891793283171 Functional Gain - ZNF547 ENSG00000152433 CDS Human protein_coding chr19:57888669 chr19:57888673 nonsynonymous SNV 0.047 1 25 hm5C_associated_SNPs_102619 0 0 0 0 0 exosome 0.500231643785157 0.500231640643378 0 0 hm5C_site_55764 DeepMRMD:0;iRNA_m5C:0 55765 chr4 128760671 128760671 1 + C A rs550978856 128760667 + 128760647 128760687 41 GCAGGAGAATCGCTTGAACCCTGGCGAAACCCCATTTCTAA GCAGGAGAATCGCTTGAACCCTGGAGAAACCCCATTTCTAA < 41bp 0.561210581112532 0.852620194300876 0.330096 0.25377756 prediction 0.582819226376688 Functional Gain - HSPA4L;PLK4 ENSG00000164070 UTR3 Human protein_coding chr4:128760667 chr4:128760671 . . 0 25 hm5C_associated_SNPs_102620 0 0 1 0 0 unknown 0.500231643922035 0.500231643923822 0 3.5740299608733e-12 hm5C_site_55765 DeepMRMD:0;iRNA_m5C:3.5740299608733e-12 55766 chr11 55860925 55860925 1 + T G BLCA 55860923 + 55860903 55860943 41 GGGAAACCTGGGACTGATCACGTTAATCAGAATGGATTCTC GGGAAACCTGGGACTGATCACGGTAATCAGAATGGATTCTC < 41bp 0.521278267486873 0.812687099915729 0.24967033 0.61006814 prediction 0.582817664857711 Functional Gain - OR8I2 ENSG00000172154 CDS Human protein_coding chr11:55860923 chr11:55860925 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_102621 0 0 0 0 0 unknown 0.50022035784192 0.500231259209021 0.22013628 2.18027342024918e-05 hm5C_site_55766 DeepMRMD:0.22013628;iRNA_m5C:2.18027342024918e-05 55767 chr20 47626847 47626847 1 + T A rs2295580 47626843 + 47626823 47626863 41 CCAGGCGGCCAACATCCGCTCAGGTTGGAAGAACATCTTTG CCAGGCGGCCAACATCCGCTCAGGATGGAAGAACATCTTTG < 41bp 0.486377233494184 0.791394067699863 0.62540686 0.862036 prediction 0.582788135399726 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47626843 chr20:47626847 synonymous SNV . 0 25 hm5C_associated_SNPs_102622 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.47325828 0 hm5C_site_55767 DeepMRMD:0.47325828;iRNA_m5C:0 55768 chrX 30260892 30260892 1 + T A LUSC 30260888 + 30260868 30260908 41 AGTGTGATCTTCTTAAATGGCAACTGTGCCCGTGAAGAGGA AGTGTGATCTTCTTAAATGGCAACAGTGCCCGTGAAGAGGA < 41bp 0.494359017701696 0.791376628549599 0.16095006 0.13817379 prediction 0.582753257099199 Functional Gain - MAGEB4 ENSG00000120289 CDS Human protein_coding chrX:30260888 chrX:30260892 nonsynonymous SNV 0.028 0 25 hm5C_associated_SNPs_102623 0 0 0 0 0 Nucleus 0.50023829445304 0.500232973885306 0 0 hm5C_site_55768 DeepMRMD:0;iRNA_m5C:0 55769 chr1 202287259 202287259 1 + T A STAD 202287255 + 202287235 202287275 41 GGTGCGATTGCAGGCGCCAACACCTTGACTGGCATTTCCTG GGTGCGATTGCAGGCGCCAACACCATGACTGGCATTTCCTG < 41bp 0.469128522249342 0.791314611784958 0.5570289 0.47105852 prediction 0.582629223569916 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202287255 chr1:202287259 nonsynonymous SNV 0.088 4 25 hm5C_associated_SNPs_102624 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643921092 0 0 hm5C_site_55769 DeepMRMD:0;iRNA_m5C:0 55770 chr10 104211884 104211884 1 + C A rs186888664 104211880 + 104211860 104211900 41 GGCATGATCTCGGCACACTGCAGCCACCGTCTTCCAGGTTC GGCATGATCTCGGCACACTGCAGCAACCGTCTTCCAGGTTC < 41bp 0.434590814767052 0.791308411131557 0.24984312 0.37587038 prediction 0.582616822263115 Functional Gain - RPARP-AS1 ENSG00000269609 ncRNA_exonic Human processed_transcript chr10:104211880 chr10:104211884 . . 0 25 hm5C_associated_SNPs_102625 0 0 1 0 2 unknown 0.500231643921172 0.500231641116297 0 0 hm5C_site_55770 DeepMRMD:0;iRNA_m5C:0 55771 chr9 90499963 90499963 1 + C A GBM 90499959 + 90499939 90499979 41 ATGCATGCAAGATCCGTCTCCTGCCAGCTTGTCCCCACCAG ATGCATGCAAGATCCGTCTCCTGCAAGCTTGTCCCCACCAG < 41bp 0.396501726286103 0.791305815178067 0.03775221 0.20839962 prediction 0.582611630356133 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90499959 chr9:90499963 synonymous SNV . 0 25 hm5C_associated_SNPs_102626 0 0 0 0 0 exosome 0.500231643920243 0.500231643926466 0 1.24460441952579e-11 hm5C_site_55771 DeepMRMD:0;iRNA_m5C:1.24460441952579e-11 55772 chr21 35747805 35747805 1 + C A rs544115822 35747801 + 35747781 35747821 41 TTCGGGACCTGTAGTTTTCCCCGGCAGGACGGTAGAAGTCG TTCGGGACCTGTAGTTTTCCCCGGAAGGACGGTAGAAGTCG < 41bp 0.585048071328489 0.87632979199973 0.36276895 0.36969638 prediction 0.582563441342482 Functional Gain - SMIM11A;SMIM11B ENSG00000205670 UTR5 Human protein_coding chr21:35747801 chr21:35747805 . . 0 25 hm5C_associated_SNPs_102627 0 0 1 0 1 unknown 0.500231643921124 0.500231643954493 0 6.67381705454773e-11 hm5C_site_55772 DeepMRMD:0;iRNA_m5C:6.67381705454773e-11 55773 chr7 96635683 96635683 1 + C G LUAD 96635682 + 96635662 96635702 41 AGCCCTTACCTCCAGTCCTACCACAACAGCAGCGCAGCCGC AGCCCTTACCTCCAGTCCTACGACAACAGCAGCGCAGCCGC < 41bp 0.508217519310077 0.799492418365355 0.04498169 0.03831908 prediction 0.582549798110556 Functional Gain - DLX6 ENSG00000006377 CDS Human protein_coding chr7:96635682 chr7:96635683 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_102628 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_55773 DeepMRMD:0;iRNA_m5C:0 55774 chr8 12675621 12675621 1 + C A rs17830672 12675617 + 12675597 12675637 41 ATAATACAGTACATTAAAATCAGACGAAGCCTCGAAGGGCA ATAATACAGTACATTAAAATCAGAAGAAGCCTCGAAGGGCA < 41bp 0.462285208709469 0.791271280929155 0.267846 0.36824244 prediction 0.58254256185831 Functional Gain - LINC00681 ENSG00000255494 ncRNA_exonic Human lincRNA chr8:12675617 chr8:12675621 . . 0 25 hm5C_associated_SNPs_102629 0 0 0 0 0 unknown 0.500230318273058 0.500231643916859 0 2.651287602351e-06 hm5C_site_55774 DeepMRMD:0;iRNA_m5C:2.651287602351e-06 55775 chr19 42821086 42821086 1 + C A MESO 42821082 + 42821062 42821102 41 TACATGACCCTGTACACGCTCACCCATGTGGTGCTGCTCAT TACATGACCCTGTACACGCTCACCAATGTGGTGCTGCTCAT < 41bp 0.362656054762125 0.791271216330866 0.13441315 0.12745497 prediction 0.582542432661731 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42821082 chr19:42821086 nonsynonymous SNV 0.341 0 25 hm5C_associated_SNPs_102630 0 0 0 0 2 nucleoplasm 0.500231643921216 0.500231643916434 0 0 hm5C_site_55775 DeepMRMD:0;iRNA_m5C:0 55776 chr21 43524057 43524057 1 + C A rs112428028 43524053 + 43524033 43524073 41 GAATGCAGATCGTGTCTCTCCAGGCGGGAAGTGTGGTCGTG GAATGCAGATCGTGTCTCTCCAGGAGGGAAGTGTGGTCGTG < 41bp 0.596961484834935 0.888202812033815 0.9177172 0.8911136 prediction 0.58248265439776 Functional Gain - UMODL1 ENSG00000177398;ENSG00000184385 CDS Human other chr21:43524053 chr21:43524057 nonsynonymous SNV 0.194 3 25 hm5C_associated_SNPs_102631 0 0 0 0 1 exosome 0.500231644032349 0.500231643000741 0 0 hm5C_site_55776 DeepMRMD:0;iRNA_m5C:0 55777 chr3 119452302 119452302 1 + T A ESCA 119452298 + 119452278 119452318 41 TAAAGTCATTACCACCAAAGCTGGTTTTCTGAAGAGGGCAG TAAAGTCATTACCACCAAAGCTGGATTTCTGAAGAGGGCAG < 41bp 0.53095310604621 0.82218624563659 0.079346806 0.14410537 prediction 0.58246627918076 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119452298 chr3:119452302 synonymous SNV . 0 25 hm5C_associated_SNPs_102632 0 0 0 0 2 exosome 0.500231643920067 0.500231643920341 0 5.48228129559902e-13 hm5C_site_55777 DeepMRMD:0;iRNA_m5C:5.48228129559902e-13 55778 chr11 56113589 56113589 1 + C A GBM 56113585 + 56113565 56113605 41 ATTTATTCTCATGGGGATTACAGACAACCCTGGGCTGCAGG ATTTATTCTCATGGGGATTACAGAAAACCCTGGGCTGCAGG < 41bp 0.575112872962967 0.866337437613086 0.13179576 0.1634871 prediction 0.582449129300238 Functional Gain - OR8K1 ENSG00000150261 CDS Human protein_coding chr11:56113585 chr11:56113589 nonsynonymous SNV 0.027 0 25 hm5C_associated_SNPs_102633 0 0 0 0 0 unknown 0.500231643921092 0.50023164392098 0 0 hm5C_site_55778 DeepMRMD:0;iRNA_m5C:0 55779 chr1 200880605 200880605 1 + T G LUSC 200880603 + 200880583 200880623 41 TGGATTCCTTCCGGGCGGGTCCTGAGGGCCGAGGTCGCAGC TGGATTCCTTCCGGGCGGGTCCGGAGGGCCGAGGTCGCAGC < 41bp 0.442992108038994 0.791221018122118 0.705273 0.91632724 prediction 0.582442036244235 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200880603 chr1:200880605 synonymous SNV . 0 23 hm5C_associated_SNPs_102634 0 0 1 0 0 cytosol 0.500231735592855 0.500231646048414 0.42210848 0 hm5C_site_55779 DeepMRMD:0.42210848;iRNA_m5C:0 55780 chr6 47624260 47624260 1 + C A COAD 47624256 + 47624236 47624276 41 CCTATGGGAACCGCAGGGTCCAGCCTGGGGAGCTGCCATTC CCTATGGGAACCGCAGGGTCCAGCATGGGGAGCTGCCATTC < 41bp 0.595071004227723 0.886283113557878 0.3639531 0.70359075 prediction 0.582424218660309 Functional Gain - ADGRF2 ENSG00000164393 CDS Human protein_coding chr6:47624256 chr6:47624260 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_102635 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.4071815 0 hm5C_site_55780 DeepMRMD:0.4071815;iRNA_m5C:0 55781 chr6 111493992 111493992 1 + C A PAAD 111493988 + 111493968 111494008 41 ATTTGGTTGTCGGAAAACAGCTGTCGTGGGTGCTGCTGTTG ATTTGGTTGTCGGAAAACAGCTGTAGTGGGTGCTGCTGTTG < 41bp 0.376886718991941 0.791139632361178 0.16240719 0.34894192 prediction 0.582279264722357 Functional Gain - SLC16A10 ENSG00000112394 CDS Human protein_coding chr6:111493988 chr6:111493992 synonymous SNV . 0 25 hm5C_associated_SNPs_102636 0 0 1 0 2 cytosol 0.500231548372164 0.500231326630876 0 0 hm5C_site_55781 DeepMRMD:0;iRNA_m5C:0 55782 chr11 55658932 55658932 1 + T A LUAD 55658928 + 55658908 55658948 41 ACTCACTGCAGTCTCTTTACCACCTCCCCACTTGTGGTGCA ACTCACTGCAGTCTCTTTACCACCACCCCACTTGTGGTGCA < 41bp 0.53609201462212 0.827215744636004 0.11530349 0.0945403 prediction 0.582247460027768 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55658928 chr11:55658932 nonsynonymous SNV 0.010 2 25 hm5C_associated_SNPs_102637 0 0 0 0 0 unknown 0.500231643923094 0.500231644084051 0 3.21914050971372e-10 hm5C_site_55782 DeepMRMD:0;iRNA_m5C:3.21914050971372e-10 55783 chr1 152484248 152484248 1 + C A LUAD 152484244 + 152484224 152484264 41 CACAGGCCCCGCCAGTCCCTCCGACGCCGACCTCAGAGTTC CACAGGCCCCGCCAGTCCCTCCGAAGCCGACCTCAGAGTTC < 41bp 0.420224386457768 0.791120915147947 0.39391786 0.5995442 prediction 0.582241830295895 Functional Gain - LCE5A ENSG00000186207 CDS Human protein_coding chr1:152484244 chr1:152484248 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_102638 0 0 0 0 0 exosome 0.500231649030611 0.500231819764733 0.1990884 3.41468243236775e-07 hm5C_site_55783 DeepMRMD:0.1990884;iRNA_m5C:3.41468243236775e-07 55784 chr5 115298329 115298329 1 + C G LUAD 115298328 + 115298308 115298348 41 CCCTGCCATGGGGCCCCCTTCCAGCTCAGGCTTCTATGTGA CCCTGCCATGGGGCCCCCTTCGAGCTCAGGCTTCTATGTGA < 41bp 0.508794488848572 0.799890131526439 0.332462 0.83108735 prediction 0.582191285355734 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115298328 chr5:115298329 synonymous SNV . 0 22 hm5C_associated_SNPs_102639 0 0 0 0 0 Cytosol 0.500231643904505 0.500231543058187 0.6621747 0 hm5C_site_55784 DeepMRMD:0.6621747;iRNA_m5C:0 55785 chr19 55597838 55597838 1 + C G BRCA 55597837 + 55597817 55597857 41 CGGCCCCGCTGGGACAGGCCCCGCTGGGACAGCTGCGATAG CGGCCCCGCTGGGACAGGCCCGGCTGGGACAGCTGCGATAG < 41bp 0.502761991362362 0.793854113410428 0.22454575 0.4314265 prediction 0.582184244096132 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55597837 chr19:55597838 nonsynonymous SNV 0.969 0 22 hm5C_associated_SNPs_102640 0 0 0 0 1 Cytosol 0.500231643364975 0.500231643921021 0 1.11209241815402e-09 hm5C_site_55785 DeepMRMD:0;iRNA_m5C:1.11209241815402e-09 55786 chrX 38533518 38533518 1 + C A BRCA 38533514 + 38533494 38533534 41 GGACTTACACGGACGCTATGCAGACTTACAATGGCAATGAT GGACTTACACGGACGCTATGCAGAATTACAATGGCAATGAT < 41bp 0.388516426900587 0.791061970576773 0.2908675 0.29248285 prediction 0.582123941153545 Functional Gain - TSPAN7 ENSG00000156298;ENSG00000250349 CDS Human other chrX:38533514 chrX:38533518 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_102641 0 0 1 0 1 Ribosome 0.500231644522882 0.500231756300812 0 2.23555860934255e-07 hm5C_site_55786 DeepMRMD:0;iRNA_m5C:2.23555860934255e-07 55787 chr18 76756910 76756910 1 + T A SKCM 76756906 + 76756886 76756926 41 CGCAGGTGCACATGGGGACACACATGTGGAATAACGCCCCC CGCAGGTGCACATGGGGACACACAAGTGGAATAACGCCCCC < 41bp 0.512242105675546 0.803276173353747 0.27342248 0.32549602 prediction 0.582068135356402 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76756906 chr18:76756910 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102642 0 0 0 0 1 exosome 0.500231643921097 0.500231643921092 0 0 hm5C_site_55787 DeepMRMD:0;iRNA_m5C:0 55788 chr2 1497607 1497607 1 + C A LIHC 1497603 + 1497583 1497623 41 AGTGGAGGGAGTTCTGCGGCCTGCCTCGCCTGGAGACCCCC AGTGGAGGGAGTTCTGCGGCCTGCATCGCCTGGAGACCCCC < 41bp 0.38901104212846 0.791026670077652 0.03206578 0.052941203 prediction 0.582053340155305 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1497603 chr2:1497607 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_102643 0 0 0 0 1 exosome 0.500231643942362 0.50023164557594 0 3.26715654530574e-09 hm5C_site_55788 DeepMRMD:0;iRNA_m5C:3.26715654530574e-09 55789 chr16 70154529 70154529 1 + T A STAD 70154525 + 70154505 70154545 41 TGGCCCTGCCCACCCAGGCACAGGTGGTCATCTGTGGAGGT TGGCCCTGCCCACCCAGGCACAGGAGGTCATCTGTGGAGGT < 41bp 0.484178002637002 0.791025733111007 0.91178215 0.9196638 prediction 0.582051466222015 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70154525 chr16:70154529 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_102644 0 0 1 0 1 Nucleus 0.500231640047201 0.500231643893636 0.0157633000000001 7.69286967461369e-09 hm5C_site_55789 DeepMRMD:0.0157633000000001;iRNA_m5C:7.69286967461369e-09 55790 chr2 234638190 234638190 1 + C A BRCA 234638186 + 234638166 234638206 41 CTACATAATGAGGCCCTGATCAGGCACCTGAATGCTACTTC CTACATAATGAGGCCCTGATCAGGAACCTGAATGCTACTTC < 41bp 0.417861893990853 0.791022331190116 0.9162965 0.92978483 prediction 0.582044662380233 Functional Gain - UGT1A3 ENSG00000241635;ENSG00000243135 CDS Human other chr2:234638186 chr2:234638190 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_102645 0 0 0 0 0 exosome 0.500231644668448 0.500231604860756 0.0269766600000001 0 hm5C_site_55790 DeepMRMD:0.0269766600000001;iRNA_m5C:0 55791 chr4 2632862 2632862 1 + C A LUSC 2632858 + 2632838 2632878 41 AGGAGTACGGCGCCCTCTGCCAGGCCGCACGCTCCATCAGC AGGAGTACGGCGCCCTCTGCCAGGACGCACGCTCCATCAGC < 41bp 0.602913242675818 0.893920338777226 0.46017945 0.5956427 prediction 0.582014192202816 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2632858 chr4:2632862 nonsynonymous SNV 0.975 4 25 hm5C_associated_SNPs_102646 0 0 0 0 1 Cytosol 0.500231643921682 0.500231643921093 0.1912854 0 hm5C_site_55791 DeepMRMD:0.1912854;iRNA_m5C:0 55792 chr3 186917829 186917829 1 + C A UCEC 186917825 + 186917805 186917845 41 ACGGTCCTGCTGCTGATCATCTACCTGCAGTTCTCTTTCCG ACGGTCCTGCTGCTGATCATCTACATGCAGTTCTCTTTCCG < 41bp 0.381178709904033 0.790963128747449 0.1732578 0.8140036 prediction 0.581926257494898 Functional Gain - RTP1 ENSG00000175077 CDS Human protein_coding chr3:186917825 chr3:186917829 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_102647 0 0 0 0 0 exosome 0.500231642277677 0.500231639961634 0.6280072 0 hm5C_site_55792 DeepMRMD:0.6280072;iRNA_m5C:0 55793 chr22 39357552 39357552 1 + C A rs151104463 39357548 + 39357528 39357568 41 GGGGCTGTGCCGGGGAAGTGCGTGCGTTCCTTCAGGAGAAC GGGGCTGTGCCGGGGAAGTGCGTGAGTTCCTTCAGGAGAAC < 41bp 0.612091082486016 0.903050258861751 0.4323956 0.48698962 prediction 0.58191835275147 Functional Gain - APOBEC3A;APOBEC3A_B ENSG00000128383 CDS Human protein_coding chr22:39357548 chr22:39357552 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_102648 0 0 0 0 0 unknown 0.500231640923457 0.50023164502308 0 8.19924705908193e-09 hm5C_site_55793 DeepMRMD:0;iRNA_m5C:8.19924705908193e-09 55794 chr5 140433011 140433011 1 + T A LIHC 140433007 + 140432987 140433027 41 TGTTCAGGATCACGGCCAACCAGCTCTTTCCACTACTGTCT TGTTCAGGATCACGGCCAACCAGCACTTTCCACTACTGTCT < 41bp 0.495356611790151 0.790935852582787 0.17954099 0.20084277 prediction 0.581871705165574 Functional Gain - PCDHB1 ENSG00000171815 CDS Human protein_coding chr5:140433007 chr5:140433011 synonymous SNV . 0 25 hm5C_associated_SNPs_102649 0 0 0 0 0 unknown 0.50023164377112 0.50023164422186 0 9.01479335624344e-10 hm5C_site_55794 DeepMRMD:0;iRNA_m5C:9.01479335624344e-10 55795 chr19 14694243 14694243 1 + C A LUSC 14694239 + 14694219 14694259 41 CCCTACAAGGACCTTCCTCCCAAGCCAGGTAAGAGGACTTT CCCTACAAGGACCTTCCTCCCAAGACAGGTAAGAGGACTTT < 41bp 0.39880369088909 0.790933780012001 0.3725329 0.41096458 prediction 0.581867560024002 Functional Gain - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14694239 chr19:14694243 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_102650 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_55795 DeepMRMD:0;iRNA_m5C:0 55796 chr20 3003388 3003388 1 + T G SKCM 3003386 + 3003366 3003406 41 GTCATTGATGCCATGCTGGACATGATGCATACAGAACGGAA GTCATTGATGCCATGCTGGACAGGATGCATACAGAACGGAA < 41bp 0.474769817851637 0.790928570079551 0.13589782 0.25512683 prediction 0.581857140159101 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3003386 chr20:3003388 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_102651 0 0 1 0 2 Ribosome 0.500231643921631 0.500231644509836 0 1.17641163477344e-09 hm5C_site_55796 DeepMRMD:0;iRNA_m5C:1.17641163477344e-09 55797 chr1 248512769 248512769 1 + C A LUAD 248512765 + 248512745 248512785 41 GCTCGGGTTTCCAAGAGGAGCAGACAGAACAAAGGCCTTTT GCTCGGGTTTCCAAGAGGAGCAGAAAGAACAAAGGCCTTTT < 41bp 0.592150398205916 0.883074253174504 0.4172557 0.8148362 prediction 0.581847709937178 Functional Gain - OR14C36 ENSG00000177174 CDS Human protein_coding chr1:248512765 chr1:248512769 nonsynonymous SNV 0.607 0 25 hm5C_associated_SNPs_102652 0 0 0 0 0 unknown 0.500231643921092 0.500231643921085 0.6296724 0 hm5C_site_55797 DeepMRMD:0.6296724;iRNA_m5C:0 55798 chr3 160939141 160939141 1 + C A rs28384382 160939137 + 160939117 160939157 41 CAGGTTGGCAGCTGACGGGACAGCCGGGGTCTATTTTGTTG CAGGTTGGCAGCTGACGGGACAGCAGGGGTCTATTTTGTTG < 41bp 0.458612356885044 0.790912853314295 0.31691232 0.5401662 prediction 0.58182570662859 Functional Gain - NMD3 ENSG00000169251 UTR5 Human protein_coding chr3:160939137 chr3:160939141 . . 0 25 hm5C_associated_SNPs_102653 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921476 0.0803324000000001 7.66942065411058e-13 hm5C_site_55798 DeepMRMD:0.0803324000000001;iRNA_m5C:7.66942065411058e-13 55799 chr14 39817997 39817997 1 + C A OV 39817993 + 39817973 39818013 41 CCCTGCTGAAAATGAAGCCACTGGCCCTGGCTTTGTTCCTC CCCTGCTGAAAATGAAGCCACTGGACCTGGCTTTGTTCCTC < 41bp 0.407687681454726 0.790898211978126 0.13335371 0.32663044 prediction 0.581796423956253 Functional Gain - MIA2 ENSG00000150527;ENSG00000258941 CDS Human other chr14:39817993 chr14:39817997 synonymous SNV . 0 25 hm5C_associated_SNPs_102654 0 0 0 0 1 cytosol 0.500231643918093 0.500231424194847 0 0 hm5C_site_55799 DeepMRMD:0;iRNA_m5C:0 55800 chr11 61539083 61539083 1 + C A BLCA 61539079 + 61539059 61539099 41 ACAGGAGCCTGGGACCGTGACAGCCCTGCCTCTGCACCCCA ACAGGAGCCTGGGACCGTGACAGCACTGCCTCTGCACCCCA < 41bp 0.371367341023057 0.790895865501955 0.30858627 0.3586266 prediction 0.58179173100391 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61539079 chr11:61539083 synonymous SNV . 0 25 hm5C_associated_SNPs_102655 0 0 1 0 0 chromatin 0.500231643921083 0.50022748702599 0 0 hm5C_site_55800 DeepMRMD:0;iRNA_m5C:0 55801 chr11 94040634 94040634 1 + C A LUAD 94040630 + 94040610 94040650 41 GGGGCCCAGTGCCTCCCTTTCTCCCATTACTTCCCCACCCC GGGGCCCAGTGCCTCCCTTTCTCCAATTACTTCCCCACCCC < 41bp 0.627057712905243 0.917941132506627 0.37914902 0.95634055 prediction 0.581766839202768 Functional Gain - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94040630 chr11:94040634 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_102656 0 0 0 0 1 unknown 0.500231644075545 0.500231643921093 0.9126811 0 hm5C_site_55801 DeepMRMD:0.9126811;iRNA_m5C:0 55802 chr11 89885630 89885630 1 + C A LUSC 89885626 + 89885606 89885646 41 TTTGAATGGTGCTGGTGACCCACTCACTCCAGGCTATCCAG TTTGAATGGTGCTGGTGACCCACTAACTCCAGGCTATCCAG < 41bp 0.384335793242418 0.790880786916209 0.074855596 0.10037041 prediction 0.581761573832418 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89885626 chr11:89885630 synonymous SNV . 0 25 hm5C_associated_SNPs_102657 0 0 1 0 1 insoluble cytoplasm 0.500234253704579 0.500231643921095 0 0 hm5C_site_55802 DeepMRMD:0;iRNA_m5C:0 55803 chr19 42791743 42791743 1 + T G LGG 42791741 + 42791721 42791761 41 CCCATGAATGCCTTCATGATCTTCAGCAAGCGGCACCGGGC CCCATGAATGCCTTCATGATCTGCAGCAAGCGGCACCGGGC < 41bp 0.54695095095847 0.837804279547505 0.25644362 0.38889787 prediction 0.58170665717807 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42791741 chr19:42791743 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_102658 0 0 1 0 1 Cytosol 0.500233177996562 0.500231919536162 0 0 hm5C_site_55803 DeepMRMD:0;iRNA_m5C:0 55804 chr1 109273410 109273410 1 + C A UCEC 109273406 + 109273386 109273426 41 ATGTTGCAGTTCTGGAGTCACACACTGGACAGTCTAAGTGT ATGTTGCAGTTCTGGAGTCACACAATGGACAGTCTAAGTGT < 41bp 0.386069506670429 0.790848855603962 0.009177804 0.07426408 prediction 0.581697711207924 Functional Gain - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109273406 chr1:109273410 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_102659 0 0 0 0 0 exosome 0.500317599356784 0.50023807282341 0 0 hm5C_site_55804 DeepMRMD:0;iRNA_m5C:0 55805 chrX 102471104 102471104 1 + C A HNSC 102471100 + 102471080 102471120 41 TAATGGAGTCCAAAGAGGAACTAGCGGCAAACAATCTCAAC TAATGGAGTCCAAAGAGGAACTAGAGGCAAACAATCTCAAC < 41bp 0.594453143889217 0.885283137379909 0.08825478 0.30972332 prediction 0.581659986981385 Functional Gain - BEX4 ENSG00000102409 CDS Human protein_coding chrX:102471100 chrX:102471104 nonsynonymous SNV 0.079 1 25 hm5C_associated_SNPs_102660 0 0 1 0 1 exosome 0.500231643921093 0.500231643921093 0 2.22044604925031e-16 hm5C_site_55805 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 55806 chr16 3554821 3554821 1 + C A UCEC 3554817 + 3554797 3554837 41 CTTGTATCTGAAGTGCTTCTCTGGCTTGTGAAAAGGTTCGA CTTGTATCTGAAGTGCTTCTCTGGATTGTGAAAAGGTTCGA < 41bp 0.390675941086532 0.790814287964238 0.17223722 0.28377092 prediction 0.581628575928477 Functional Gain - CLUAP1 ENSG00000103351 CDS Human protein_coding chr16:3554817 chr16:3554821 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102661 0 0 0 0 1 chromatin 0.500231535920672 0.500231644493348 0 2.17145350811521e-07 hm5C_site_55806 DeepMRMD:0;iRNA_m5C:2.17145350811521e-07 55807 chr8 97285595 97285595 1 + T G UCEC 97285593 + 97285573 97285613 41 GTTATTTTCTTCTTTCTTATCATCAGTGTGTTAGCTTTCCC GTTATTTTCTTCTTTCTTATCAGCAGTGTGTTAGCTTTCCC < 41bp 0.541570132600481 0.832373982149246 0.19980958 0.636396 prediction 0.581607699097529 Functional Gain - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97285593 chr8:97285595 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_102662 0 0 1 0 2 Ribosome 0.500231638538976 0.500231640021109 0.272792 2.96426660995053e-09 hm5C_site_55807 DeepMRMD:0.272792;iRNA_m5C:2.96426660995053e-09 55808 chr12 65672591 65672591 1 + C A CESC 65672587 + 65672567 65672607 41 CTCCCGCGCCCCCTCTCGCTCTGCCTCTCCCTCTGCCTCTG CTCCCGCGCCCCCTCTCGCTCTGCATCTCCCTCTGCCTCTG < 41bp 0.59186458006176 0.882664538985599 0.27014887 0.15843794 prediction 0.581599917847679 Functional Gain - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65672587 chr12:65672591 nonsynonymous SNV 0.545 0 25 hm5C_associated_SNPs_102663 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_55808 DeepMRMD:0;iRNA_m5C:0 55809 chr18 77807137 77807137 1 + T G rs72972289 77807134 + 77807114 77807154 41 TCCAAGCCCTGGCTCTCTGCCAGTGCAGCAGGGCTGTGAGA TCCAAGCCCTGGCTCTCTGCCAGGGCAGCAGGGCTGTGAGA < 41bp 0.430979744279513 0.79078393876671 0.087356955 0.922713 prediction 0.58156787753342 Functional Gain - RBFA ENSG00000261126 ncRNA_exonic Human lincRNA chr18:77807134 chr18:77807137 . . 0 24 hm5C_associated_SNPs_102664 0 0 1 0 0 Ribosome 0.500231643921411 0.500231657296284 0.845426 2.67497475281431e-08 hm5C_site_55809 DeepMRMD:0.845426;iRNA_m5C:2.67497475281431e-08 55810 chr8 98656815 98656815 1 + C A KIRC 98656811 + 98656791 98656831 41 CCGGCTGCGGGAAATGCTCTCGGTCGGCCTAGGCTTTCTGC CCGGCTGCGGGAAATGCTCTCGGTAGGCCTAGGCTTTCTGC < 41bp 0.577860785288165 0.868640546493379 0.81406975 0.90164137 prediction 0.581559522410428 Functional Gain - MTDH ENSG00000147649 CDS Human protein_coding chr8:98656811 chr8:98656815 synonymous SNV . 0 25 hm5C_associated_SNPs_102665 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.17514324 1.11022302462516e-15 hm5C_site_55810 DeepMRMD:0.17514324;iRNA_m5C:1.11022302462516e-15 55811 chrX 117959260 117959260 1 + T G GBM 117959258 + 117959238 117959278 41 AGCCGGCGGCTGAATGCACCCTTGCCGCCTTGGGCCCATTC AGCCGGCGGCTGAATGCACCCTGGCCGCCTTGGGCCCATTC < 41bp 0.456662687324859 0.790779659473236 0.0050074756 0.15893912 prediction 0.581559318946472 Functional Gain - ZCCHC12 ENSG00000174460 CDS Human protein_coding chrX:117959258 chrX:117959260 nonsynonymous SNV 0.973 3 23 hm5C_associated_SNPs_102666 0 0 0 0 0 exosome 0.500231643921175 0.50023164679289 0 5.7434299538528e-09 hm5C_site_55811 DeepMRMD:0;iRNA_m5C:5.7434299538528e-09 55812 chr16 57732892 57732892 1 + C G LUSC 57732891 + 57732871 57732911 41 TACAGCCATCTGTGCCCGGACCGCGTGCCCCTCTTCCTGCA TACAGCCATCTGTGCCCGGACGGCGTGCCCCTCTTCCTGCA < 41bp 0.476638012141732 0.790751276236552 0.34959483 0.67873245 prediction 0.581502552473104 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57732891 chr16:57732892 nonsynonymous SNV 0.989 4 22 hm5C_associated_SNPs_102667 0 0 0 0 1 cytosol 0.50023164392119 0.500231643921092 0.3574649 0 hm5C_site_55812 DeepMRMD:0.3574649;iRNA_m5C:0 55813 chr3 129695711 129695711 1 + C A ACC 129695707 + 129695687 129695727 41 AGAAGATGAGGCTTCATGGTCAGTCGATGTAACCCAGCACA AGAAGATGAGGCTTCATGGTCAGTAGATGTAACCCAGCACA < 41bp 0.408352329841317 0.790747071411865 0.4985569 0.43392813 prediction 0.581494142823731 Functional Gain - TRH ENSG00000170893 CDS Human protein_coding chr3:129695707 chr3:129695711 synonymous SNV . 0 25 hm5C_associated_SNPs_102668 0 0 0 0 0 Cytosol 0.500231649004158 0.500224057776096 0 0 hm5C_site_55813 DeepMRMD:0;iRNA_m5C:0 55814 chr19 58549411 58549411 1 + C G BLCA 58549410 + 58549390 58549430 41 GTGCCGCCAGTGGCTGAGGCCCGAGGCGCGCTCCAAGGAGC GTGCCGCCAGTGGCTGAGGCCGGAGGCGCGCTCCAAGGAGC < 41bp 0.529411993618501 0.820151389289275 0.6539974 0.9080193 prediction 0.581478791341548 Functional Gain - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58549410 chr19:58549411 synonymous SNV . 0 22 hm5C_associated_SNPs_102669 0 0 0 0 0 exosome 0.500232370289171 0.500231807288963 0.5080438 0 hm5C_site_55814 DeepMRMD:0.5080438;iRNA_m5C:0 55815 chrX 37027909 37027909 1 + C G LUAD 37027908 + 37027888 37027928 41 ACTGGAGTGTCCCATCTCTGCCCGGAGCCTCCAGAGAAGGA ACTGGAGTGTCCCATCTCTGCGCGGAGCCTCCAGAGAAGGA < 41bp 0.505507573722744 0.796225065595692 0.05540213 0.32520205 prediction 0.581434983745895 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37027908 chrX:37027909 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_102670 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_55815 DeepMRMD:0;iRNA_m5C:0 55816 chr20 39984614 39984614 1 + C A UCEC 39984610 + 39984590 39984630 41 CCTGGAGATCCCCTCCTTGCCACCCTCCACTCCACCCTCCA CCTGGAGATCCCCTCCTTGCCACCATCCACTCCACCCTCCA < 41bp 0.362863318571995 0.790690353319896 0.003459543 0.0025821924 prediction 0.581380706639792 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39984610 chr20:39984614 synonymous SNV . 0 25 hm5C_associated_SNPs_102671 0 0 1 0 2 Nucleus 0.500231643921093 0.500231643921093 0 6.66133814775094e-16 hm5C_site_55816 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 55817 chr7 100390118 100390118 1 + C A LUSC 100390114 + 100390094 100390134 41 CTCAGTGGGTACGCCATCCTCTGCCAGGAGGCGGGCGCTGC CTCAGTGGGTACGCCATCCTCTGCAAGGAGGCGGGCGCTGC < 41bp 0.42414166737508 0.790681812282527 0.31652927 0.9133004 prediction 0.581363624565055 Functional Gain - ZAN ENSG00000146839 CDS Human protein_coding chr7:100390114 chr7:100390118 nonsynonymous SNV 0.870 2 25 hm5C_associated_SNPs_102672 0 0 0 0 2 cytosol 0.500231645435027 0.500231643842925 0.8266008 0 hm5C_site_55817 DeepMRMD:0.8266008;iRNA_m5C:0 55818 chr1 196749016 196749016 1 + C A LUAD 196749012 + 196748992 196749032 41 GGTAACTCTACAGAAGTTGCCTGCCATCCTGGCTACGGTCT GGTAACTCTACAGAAGTTGCCTGCAATCCTGGCTACGGTCT < 41bp 0.40287315408569 0.790653496296965 0.088661075 0.10127169 prediction 0.581306992593929 Functional Gain - CFHR3 ENSG00000116785 CDS Human protein_coding chr1:196749012 chr1:196749016 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102673 0 0 0 0 2 Endoplasmic reticulum 0.500232005741861 0.5002316444609 0 0 hm5C_site_55818 DeepMRMD:0;iRNA_m5C:0 55819 chr7 73280033 73280033 1 + C A UCEC 73280029 + 73280009 73280049 41 TATCTCATCACCTGGACCACCTGCCTGGCCTCCCACCTGCT TATCTCATCACCTGGACCACCTGCATGGCCTCCCACCTGCT < 41bp 0.380766543103055 0.790648408290354 0.26004314 0.59235835 prediction 0.581296816580709 Functional Gain - TMEM270 ENSG00000175877 CDS Human protein_coding chr7:73280029 chr7:73280033 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_102674 0 0 0 0 0 unknown 0.500231643921093 0.500231887206843 0.1847167 4.86571500868394e-07 hm5C_site_55819 DeepMRMD:0.1847167;iRNA_m5C:4.86571500868394e-07 55820 chr3 196386964 196386964 1 + C A rs1798631 196386960 + 196386940 196386980 41 CGCCCTGACGGAGGACATGGCAGCCCTCATGCTCCAGAACC CGCCCTGACGGAGGACATGGCAGCACTCATGCTCCAGAACC < 41bp 0.606611897252412 0.897238458447197 0.18718103 0.28727597 prediction 0.581253122389568 Functional Gain - NRROS ENSG00000174004 CDS Human protein_coding chr3:196386960 chr3:196386964 synonymous SNV . 0 25 hm5C_associated_SNPs_102675 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921205 0 2.24709140184132e-13 hm5C_site_55820 DeepMRMD:0;iRNA_m5C:2.24709140184132e-13 55821 chr17 35298029 35298029 1 + C A PCPG 35298025 + 35298005 35298045 41 GCGGGTAGCAACGAGAATGACGACCAGAACCTGGGCGCCAA GCGGGTAGCAACGAGAATGACGACAAGAACCTGGGCGCCAA < 41bp 0.624982880287374 0.915609122586249 0.29261506 0.44280916 prediction 0.581252484597749 Functional Gain - LHX1 ENSG00000132130 CDS Human other chr17:35298025 chr17:35298029 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102676 0 0 0 0 0 exosome 0.500231643919341 0.500231643921092 0 3.50297568729729e-12 hm5C_site_55821 DeepMRMD:0;iRNA_m5C:3.50297568729729e-12 55822 chr19 56164375 56164375 1 + C A rs578232683 56164371 + 56164351 56164391 41 AAACCAGGCAGGCGGGTGCCCCCCCCTCGAGTGGGGGACTG AAACCAGGCAGGCGGGTGCCCCCCACTCGAGTGGGGGACTG < 41bp 0.455828686152994 0.79061904979256 0.27879712 0.24162042 prediction 0.581238099585121 Functional Gain - CCDC106 ENSG00000173581 UTR3 Human protein_coding chr19:56164371 chr19:56164375 . . 0 25 hm5C_associated_SNPs_102677 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_55822 DeepMRMD:0;iRNA_m5C:0 55823 chr2 54886356 54886356 1 + C A SKCM 54886352 + 54886332 54886372 41 GAGGAAGAGGCGGCCGCCTTCTCCCGAGCCGAGCACGAAGG GAGGAAGAGGCGGCCGCCTTCTCCAGAGCCGAGCACGAAGG < 41bp 0.37813385256974 0.790616016986379 0.20344141 0.93690604 prediction 0.581232033972757 Functional Gain - SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54886352 chr2:54886356 synonymous SNV . 0 25 hm5C_associated_SNPs_102678 0 0 1 0 2 Nucleus 0.500231643921093 0.500231643921092 0.87381208 0 hm5C_site_55823 DeepMRMD:0.87381208;iRNA_m5C:0 55824 chr15 81440758 81440758 1 + T G LUAD 81440755 + 81440735 81440775 41 GAGTTGAGAAACCAAGGAACCACTGGATGTTGGTTACTGGG GAGTTGAGAAACCAAGGAACCACGGGATGTTGGTTACTGGG < 41bp 0.41772705714811 0.790609144306829 0.29951102 0.41974512 prediction 0.581218288613658 Functional Gain - CFAP161 ENSG00000156206 CDS Human protein_coding chr15:81440755 chr15:81440758 nonsynonymous SNV 0.809 4 24 hm5C_associated_SNPs_102679 0 0 0 0 1 chromatin 0.5002316431835 0.500231646959834 0 7.55266849061798e-09 hm5C_site_55824 DeepMRMD:0;iRNA_m5C:7.55266849061798e-09 55825 chr5 17345795 17345795 1 + C A rs146781914 17345791 + 17345771 17345811 41 CTAGAGTTGATTCTGCTGATCTGGCTGGCTAGGCGGGTGTC CTAGAGTTGATTCTGCTGATCTGGATGGCTAGGCGGGTGTC < 41bp 0.473761164486079 0.790592911497443 0.84191525 0.88844496 prediction 0.581185822994887 Functional Gain - BASP1;LINC02111 ENSG00000201715 ncRNA_exonic Human misc_RNA chr5:17345791 chr5:17345795 . . 0 25 hm5C_associated_SNPs_102680 0 0 1 0 0 unknown 0.500231667679406 0.500231643171618 0.0930594199999999 0 hm5C_site_55825 DeepMRMD:0.0930594199999999;iRNA_m5C:0 55826 chr12 55795003 55795003 1 + C A LUSC 55794999 + 55794979 55795019 41 ATTCTGAAGATTCCCTCTGCCCAGCAAAGGAAAAAGGCTTT ATTCTGAAGATTCCCTCTGCCCAGAAAAGGAAAAAGGCTTT < 41bp 0.426042956910592 0.790581328966991 0.016247302 0.0466094 prediction 0.581162657933981 Functional Gain - OR6C65 ENSG00000205328 CDS Human protein_coding chr12:55794999 chr12:55795003 nonsynonymous SNV 0.198 1 25 hm5C_associated_SNPs_102681 0 0 0 0 0 unknown 0.50023165039384 0.500231646461736 0 0 hm5C_site_55826 DeepMRMD:0;iRNA_m5C:0 55827 chr6 100062330 100062330 1 + C A GBM 100062326 + 100062306 100062346 41 AAGCCACTCAAGTGCAAAGTCTGTCTGCGGCCCTTCGGCGA AAGCCACTCAAGTGCAAAGTCTGTATGCGGCCCTTCGGCGA < 41bp 0.398093895646761 0.790556285761494 0.31928015 0.26041207 prediction 0.581112571522987 Functional Gain - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100062326 chr6:100062330 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_102682 0 0 0 0 0 exosome 0.500231636993751 0.500231795536598 0 3.17085694589991e-07 hm5C_site_55827 DeepMRMD:0;iRNA_m5C:3.17085694589991e-07 55828 chr1 212799429 212799429 1 + C A UCEC 212799425 + 212799405 212799445 41 TCCACCCGGCAGAGCAAGAGCAGCCTGAGTGGACAGCATGG TCCACCCGGCAGAGCAAGAGCAGCATGAGTGGACAGCATGG < 41bp 0.598790156355342 0.889335748136163 0.84874916 0.890653 prediction 0.581091183561643 Functional Gain - FAM71A ENSG00000162771 CDS Human protein_coding chr1:212799425 chr1:212799429 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102683 0 0 0 0 0 exosome 0.500231644089882 0.500231659115062 0.0838076800000001 3.00503608663405e-08 hm5C_site_55828 DeepMRMD:0.0838076800000001;iRNA_m5C:3.00503608663405e-08 55829 chrX 23929925 23929925 1 + T A UCEC 23929921 + 23929901 23929941 41 AATACAGAGGGCTTGGTTATCTCATACAAACAAAATGATAT AATACAGAGGGCTTGGTTATCTCAAACAAACAAAATGATAT < 41bp 0.47880471046596 0.79054174849112 0.33900353 0.77595794 prediction 0.581083496982241 Functional Gain - CXorf58 ENSG00000165182 CDS Human protein_coding chrX:23929921 chrX:23929925 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_102684 0 0 0 0 2 chromatin 0.500231643928115 0.500231689169361 0.55191588 9.04824921654779e-08 hm5C_site_55829 DeepMRMD:0.55191588;iRNA_m5C:9.04824921654779e-08 55830 chr18 2573020 2573020 1 + C A THCA 2573016 + 2572996 2573036 41 TTCAGTTTCCAGCGGTGGTGCTGGCCGCCTCTCCATGCAGG TTCAGTTTCCAGCGGTGGTGCTGGACGCCTCTCCATGCAGG < 41bp 0.606314131550617 0.896846355729383 0.025501758 0.114085466 prediction 0.581064448357533 Functional Gain - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2573016 chr18:2573020 synonymous SNV . 0 25 hm5C_associated_SNPs_102685 0 0 1 0 2 Cytosol 0.500231638735546 0.500231642898434 0 8.32577473630636e-09 hm5C_site_55830 DeepMRMD:0;iRNA_m5C:8.32577473630636e-09 55831 chr2 46414434 46414434 1 + C A rs3738893 46414430 + 46414410 46414450 41 AGTCAAATAATACATTCCACCTGGCAGCTGAAGGCAGCCAG AGTCAAATAATACATTCCACCTGGAAGCTGAAGGCAGCCAG < 41bp 0.490606779812961 0.79053040187722 0.04664895 0.13470444 prediction 0.581060803754439 Functional Gain - PRKCE ENSG00000171132 UTR3 Human protein_coding chr2:46414430 chr2:46414434 . . 0 25 hm5C_associated_SNPs_102686 0 0 0 1 0 chromatin 0.500231517395228 0.500231643921002 0 2.5305154749411e-07 hm5C_site_55831 DeepMRMD:0;iRNA_m5C:2.5305154749411e-07 55832 chr1 156255635 156255635 1 + C G rs36114587 156255634 + 156255614 156255654 41 GGCTGTGGCCTCCGTGGGAGCCGCACTCATTCTCTTCCCTT GGCTGTGGCCTCCGTGGGAGCGGCACTCATTCTCTTCCCTT < 41bp 0.517913624523776 0.80843468645135 0.19087061 0.2834348 prediction 0.581042123855148 Functional Gain - TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255634 chr1:156255635 synonymous SNV . 0 22 hm5C_associated_SNPs_102687 0 0 1 0 0 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_55832 DeepMRMD:0;iRNA_m5C:0 55833 chr1 16975289 16975289 1 + T A BRCA 16975285 + 16975265 16975305 41 CCATCAATCCTGGACCCCCCCAGGTTAGGAGTTGGGCCAGT CCATCAATCCTGGACCCCCCCAGGATAGGAGTTGGGCCAGT < 41bp 0.505969564726351 0.796489633432926 0.52961844 0.44047135 prediction 0.58104013741315 Functional Gain - MST1P2 ENSG00000186301 ncRNA_splicing Human unprocessed_pseudogene chr1:16975285 chr1:16975289 . . 0 25 hm5C_associated_SNPs_102688 0 0 0 0 1 unknown 0.500231644381862 0.50023164406462 0 0 hm5C_site_55833 DeepMRMD:0;iRNA_m5C:0 55834 chr1 151039900 151039900 1 + T A LAML 151039896 + 151039876 151039916 41 AAAACCCTGAAGGTGATGGCCTCCTTGAGTACAGCACCTTC AAAACCCTGAAGGTGATGGCCTCCATGAGTACAGCACCTTC < 41bp 0.556432989024823 0.846946711014746 0.0595071 0.9629594 prediction 0.581027443979846 Functional Gain - MLLT11 ENSG00000213190 CDS Human protein_coding chr1:151039896 chr1:151039900 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_102689 0 0 1 0 0 Cytosol 0.50023174294643 0.500232136621913 0.9259188 7.87350965536504e-07 hm5C_site_55834 DeepMRMD:0.9259188;iRNA_m5C:7.87350965536504e-07 55835 chr3 157289088 157289088 1 + C A SARC 157289084 + 157289064 157289104 41 GCTGCTACCTGACTAACCAACTGCCTATTCAGGTAAAAGTT GCTGCTACCTGACTAACCAACTGCATATTCAGGTAAAAGTT < 41bp 0.378644905032318 0.790508784845359 0.39021122 0.5416651 prediction 0.581017569690718 Functional Gain - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157289084 chr3:157289088 nonsynonymous SNV 0.145 1 25 hm5C_associated_SNPs_102690 0 0 0 1 1 exosome 0.500231643905916 0.500231643921054 0.0833302 3.02762259707379e-11 hm5C_site_55835 DeepMRMD:0.0833302;iRNA_m5C:3.02762259707379e-11 55836 chr12 56732989 56732989 1 + T A SARC 56732985 + 56732965 56733005 41 GTGCACATCCACTAGTGGGACACATGGTGAGTGGCAGCCCC GTGCACATCCACTAGTGGGACACAAGGTGAGTGGCAGCCCC < 41bp 0.515878605009969 0.806386801708513 0.30571413 0.2508176 prediction 0.581016393397088 Functional Gain - IL23A ENSG00000110944 CDS Human protein_coding chr12:56732985 chr12:56732989 nonsynonymous SNV 0.943 1 25 hm5C_associated_SNPs_102691 0 0 0 0 1 Cytosol 0.500231643921097 0.500231643919925 0 0 hm5C_site_55836 DeepMRMD:0;iRNA_m5C:0 55837 chr3 183823930 183823930 1 + C A UCEC 183823926 + 183823906 183823946 41 TTCCCTCCAGGTGTCTACTTCGCCCTGTGCCTGTCCCTGAT TTCCCTCCAGGTGTCTACTTCGCCATGTGCCTGTCCCTGAT < 41bp 0.619172301224721 0.909677425642236 0.19544056 0.8029435 prediction 0.58101024883503 Functional Gain - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823926 chr3:183823930 nonsynonymous SNV 0.457 4 25 hm5C_associated_SNPs_102692 0 0 0 0 1 unknown 0.500231643921092 0.500231643921118 0.605887 5.15143483426073e-14 hm5C_site_55837 DeepMRMD:0.605887;iRNA_m5C:5.15143483426073e-14 55838 chr8 22459493 22459493 1 + C A rs73549908 22459489 + 22459469 22459509 41 TCTCTCCTGTGCATAGGATCCCGGCGAGGAGGAGTCGACCC TCTCTCCTGTGCATAGGATCCCGGAGAGGAGGAGTCGACCC < 41bp 0.599809742260794 0.890311873325531 0.40014875 0.75271297 prediction 0.581004262129472 Functional Gain - C8orf58 ENSG00000241852;ENSG00000248235 CDS Human other chr8:22459489 chr8:22459493 synonymous SNV . 0 25 hm5C_associated_SNPs_102693 0 0 0 0 1 exosome 0.500231642677398 0.500231633799657 0.50542594 0 hm5C_site_55838 DeepMRMD:0.50542594;iRNA_m5C:0 55839 chr7 29943929 29943929 1 + C A rs140535643 29943925 + 29943905 29943945 41 GTACACCTGGTCCCTGGCTCCAAGCGGAAGCAGTCGGGCAG GTACACCTGGTCCCTGGCTCCAAGAGGAAGCAGTCGGGCAG < 41bp 0.397367165933294 0.790494400966251 0.52524054 0.76744866 prediction 0.580988801932501 Functional Gain - WIPF3 ENSG00000122574 CDS Human protein_coding chr7:29943925 chr7:29943929 nonsynonymous SNV 0.066 2 25 hm5C_associated_SNPs_102694 0 0 0 0 2 nucleolus 0.500231643913303 0.500231643921093 0.48441624 1.557909357075e-11 hm5C_site_55839 DeepMRMD:0.48441624;iRNA_m5C:1.557909357075e-11 55840 chr19 49513331 49513331 1 + C A rs117752118 49513327 + 49513307 49513347 41 ACGCTATGGGCTCCCAGGTGCGGCCGGGACTCCCGGGATCC ACGCTATGGGCTCCCAGGTGCGGCAGGGACTCCCGGGATCC < 41bp 0.428338501258271 0.790494367257512 0.7900121 0.8227262 prediction 0.580988734515024 Functional Gain - RUVBL2 ENSG00000183207 intronic Human protein_coding chr19:49513327 chr19:49513331 . . 0 25 hm5C_associated_SNPs_102695 0 0 1 0 0 chromatin 0.500231643921092 0.500231643900914 0.0654281999999999 0 hm5C_site_55840 DeepMRMD:0.0654281999999999;iRNA_m5C:0 55841 chr3 105266005 105266005 1 + C A UCEC 105266001 + 105265981 105266021 41 TTATTTAATCAGGATAACATCAGGCTTCGATCTAGCCCGTC TTATTTAATCAGGATAACATCAGGATTCGATCTAGCCCGTC < 41bp 0.411931274175448 0.790492381674685 0.3169809 0.2622209 prediction 0.58098476334937 Functional Gain - ALCAM ENSG00000170017 CDS Human protein_coding chr3:105266001 chr3:105266005 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_102696 0 0 0 0 1 Endoplasmic reticulum 0.500231644347345 0.500231643968361 0 0 hm5C_site_55841 DeepMRMD:0;iRNA_m5C:0 55842 chr1 6681634 6681634 1 + C G LGG 6681633 + 6681613 6681653 41 CTGCCAAAAGTGCCGGGACTCCAAGTTTGACATCCGCCGTT CTGCCAAAAGTGCCGGGACTCGAAGTTTGACATCCGCCGTT < 41bp 0.502631014470688 0.79310720129607 0.52715033 0.8890233 prediction 0.580952373650764 Functional Gain - PHF13 ENSG00000116273 CDS Human protein_coding chr1:6681633 chr1:6681634 synonymous SNV . 0 22 hm5C_associated_SNPs_102697 0 0 1 0 0 cytosol 0.500231643921092 0.500231643921092 0.72374594 0 hm5C_site_55842 DeepMRMD:0.72374594;iRNA_m5C:0 55843 chr1 150954809 150954809 1 + C A rs146656705 150954805 + 150954785 150954825 41 GGAGGCAGTGCTCACACAGGCAAGCTACCAGGCCACAACAA GGAGGCAGTGCTCACACAGGCAAGATACCAGGCCACAACAA < 41bp 0.513494709656805 0.803964800668467 0.20991656 0.30757886 prediction 0.580940182023325 Functional Gain - ANXA9 ENSG00000143412 UTR5 Human protein_coding chr1:150954805 chr1:150954809 . . 0 25 hm5C_associated_SNPs_102698 0 0 0 0 1 cytosol 0.500231643921094 0.500231643921095 0 1.99840144432528e-15 hm5C_site_55843 DeepMRMD:0;iRNA_m5C:1.99840144432528e-15 55844 chr9 116116596 116116596 1 + C A HNSC 116116592 + 116116572 116116612 41 CCAAGTATGTGGCGGACGTCCTGCCGGGGAAGAATCAAAGA CCAAGTATGTGGCGGACGTCCTGCAGGGGAAGAATCAAAGA < 41bp 0.628215392184558 0.918673040962296 0.33030996 0.49814662 prediction 0.580915297555476 Functional Gain - BSPRY ENSG00000119411 CDS Human protein_coding chr9:116116592 chr9:116116596 nonsynonymous SNV 0.975 0 25 hm5C_associated_SNPs_102699 0 0 0 0 2 Ribosome 0.500218665178571 0.500231554473534 0 2.57785899258067e-05 hm5C_site_55844 DeepMRMD:0;iRNA_m5C:2.57785899258067e-05 55845 chr5 161580247 161580247 1 + C A LUAD 161580243 + 161580223 161580263 41 TCTGCTGTTTTGAAGATTGTCGAACAGGAGCTTGGAGACAT TCTGCTGTTTTGAAGATTGTCGAAAAGGAGCTTGGAGACAT < 41bp 0.40259014249547 0.790453595223763 0.1262798 0.32118544 prediction 0.580907190447526 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161580243 chr5:161580247 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102700 0 0 0 0 0 exosome 0.50023150379458 0.500231643908212 0 2.8022726339394e-07 hm5C_site_55845 DeepMRMD:0;iRNA_m5C:2.8022726339394e-07 55846 chr7 142749568 142749568 1 + T G UCEC 142749566 + 142749546 142749586 41 TTCATGGGAAACACCATCATCATAGTTATGGTCATAGCTGA TTCATGGGAAACACCATCATCAGAGTTATGGTCATAGCTGA < 41bp 0.464611673234694 0.790452713838698 0.12594256 0.40516254 prediction 0.580905427677395 Functional Gain - OR6V1 ENSG00000225781 CDS Human protein_coding chr7:142749566 chr7:142749568 nonsynonymous SNV 0.451 1 23 hm5C_associated_SNPs_102701 0 0 0 0 0 unknown 0.500231644077723 0.500231643921082 0 0 hm5C_site_55846 DeepMRMD:0;iRNA_m5C:0 55847 chrX 48368317 48368317 1 + C A UCEC 48368313 + 48368293 48368333 41 ATCTGGCTGCTCCTTGCCATCTGCCTCGCCTGCCGCCTCCT ATCTGGCTGCTCCTTGCCATCTGCATCGCCTGCCGCCTCCT < 41bp 0.609107411460978 0.899556622149692 0.16442782 0.17404842 prediction 0.580898421377428 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48368313 chrX:48368317 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_102702 0 0 0 0 1 nucleolus 0.500231643922483 0.500231646814189 0 5.78341063928178e-09 hm5C_site_55847 DeepMRMD:0;iRNA_m5C:5.78341063928178e-09 55848 chr19 15198922 15198922 1 + C A rs372953371 15198918 + 15198898 15198938 41 ACCCTGGAGGAGTTCAGAGTCTAGCTGGGAACAGAGACATG ACCCTGGAGGAGTTCAGAGTCTAGATGGGAACAGAGACATG < 41bp 0.595773316298304 0.886216605752582 0.10457608 0.23335713 prediction 0.580886578908556 Functional Gain - OR1I1 ENSG00000094661 CDS Human protein_coding chr19:15198918 chr19:15198922 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_102703 0 0 0 0 0 unknown 0.50022970313448 0.500231643747303 0 3.88122564576321e-06 hm5C_site_55848 DeepMRMD:0;iRNA_m5C:3.88122564576321e-06 55849 chr13 28494600 28494600 1 + C A LUSC 28494596 + 28494576 28494616 41 CCGGAGGGAGCCGAGCCGGGCGTCCTGGAGGAGCCCAACCG CCGGAGGGAGCCGAGCCGGGCGTCATGGAGGAGCCCAACCG < 41bp 0.415509802194545 0.79042116682454 0.7724203 0.8870907 prediction 0.580842333649079 Functional Gain - PDX1 ENSG00000139515 CDS Human protein_coding chr13:28494596 chr13:28494600 nonsynonymous SNV 0.133 1 25 hm5C_associated_SNPs_102704 0 0 1 0 1 exosome 0.500231643921092 0.500231619337499 0.2293408 0 hm5C_site_55849 DeepMRMD:0.2293408;iRNA_m5C:0 55850 chr2 242742979 242742979 1 + T A ESCA 242742975 + 242742955 242742995 41 AACAACATGTGGTTCGACTTCGGCTTCGACCCCAACGCGCA AACAACATGTGGTTCGACTTCGGCATCGACCCCAACGCGCA < 41bp 0.502844446493526 0.793251598480182 0.27484283 0.24117458 prediction 0.580814303973312 Functional Gain - GAL3ST2 ENSG00000154252 CDS Human protein_coding chr2:242742975 chr2:242742979 nonsynonymous SNV 0.916 1 25 hm5C_associated_SNPs_102705 0 0 0 0 0 nucleolus 0.500231643921087 0.50023164392109 0 5.99520433297585e-15 hm5C_site_55850 DeepMRMD:0;iRNA_m5C:5.99520433297585e-15 55851 chr11 64360971 64360971 1 + C A UCEC 64360967 + 64360947 64360987 41 GCCCCTGCCTTCCCCGTGTACTGCCTGTTCCGCTTCCTGTT GCCCCTGCCTTCCCCGTGTACTGCATGTTCCGCTTCCTGTT < 41bp 0.376178196202239 0.790402605529091 0.29156104 0.21964014 prediction 0.580805211058182 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64360967 chr11:64360971 nonsynonymous SNV 0.747 2 25 hm5C_associated_SNPs_102706 0 0 0 0 1 unknown 0.500231643921092 0.500231620307435 0 0 hm5C_site_55851 DeepMRMD:0;iRNA_m5C:0 55852 chr2 16086025 16086025 1 + T A BRCA 16086021 + 16086001 16086041 41 CGCCGCAACGACCTTCGGTCCAGCTTTCTCACGCTCAGGGA CGCCGCAACGACCTTCGGTCCAGCATTCTCACGCTCAGGGA < 41bp 0.471843063742902 0.790377190817889 0.17022306 0.16112822 prediction 0.580754381635778 Functional Gain - MYCN ENSG00000134323 CDS Human protein_coding chr2:16086021 chr2:16086025 nonsynonymous SNV 0.994 5 25 hm5C_associated_SNPs_102707 0 0 0 0 0 Cytosol 0.500231643921093 0.500231643921093 0 4.44089209850063e-16 hm5C_site_55852 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 55853 chr14 52186894 52186894 1 + C G rs56069447 52186893 + 52186873 52186913 41 CATGAAACACAAGCGCCTGTCCCGTCATTCCACCGCCAGCC CATGAAACACAAGCGCCTGTCGCGTCATTCCACCGCCAGCC < 41bp 0.496620197288625 0.790371934702765 0.3201399 0.6636144 prediction 0.58074386940553 Functional Gain - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52186893 chr14:52186894 synonymous SNV . 0 22 hm5C_associated_SNPs_102708 0 0 0 0 0 nucleus 0.500231645080745 0.50023006053068 0.3272288 0 hm5C_site_55853 DeepMRMD:0.3272288;iRNA_m5C:0 55854 chr17 38133123 38133123 1 + C A LAML 38133119 + 38133099 38133139 41 CTGGATAAAGAGGGTGTTTTCCCCCTGCAACCTGAGCTGCT CTGGATAAAGAGGGTGTTTTCCCCATGCAACCTGAGCTGCT < 41bp 0.391456251033362 0.790365612409803 0.56150675 0.8150962 prediction 0.580731224819605 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38133119 chr17:38133123 nonsynonymous SNV 0.910 3 25 hm5C_associated_SNPs_102709 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921093 0.5071789 2.22044604925031e-16 hm5C_site_55854 DeepMRMD:0.5071789;iRNA_m5C:2.22044604925031e-16 55855 chrX 31838129 31838129 1 + C A LUSC 31838125 + 31838105 31838145 41 GGTCAGTCCAGGAGCTAGGTCAGGCTGCTTTGCCCTCAGCT GGTCAGTCCAGGAGCTAGGTCAGGATGCTTTGCCCTCAGCT < 41bp 0.571450559658922 0.861812105945663 0.9240783 0.9304044 prediction 0.580723092573482 Functional Gain - DMD ENSG00000198947 CDS Human protein_coding chrX:31838125 chrX:31838129 nonsynonymous SNV 0.976 0 25 hm5C_associated_SNPs_102710 0 0 0 0 0 chromatin 0.500231643970269 0.500231643921093 0.0126522 0 hm5C_site_55855 DeepMRMD:0.0126522;iRNA_m5C:0 55856 chr1 159176178 159176178 1 + C A OV 159176174 + 159176154 159176194 41 CACCAGGCCACCCGCACCCTCTTGCCCTCTCTGCCCCTCCC CACCAGGCCACCCGCACCCTCTTGACCTCTCTGCCCCTCCC < 41bp 0.397543011215967 0.790357063566981 0.0928112 0.16880533 prediction 0.580714127133962 Functional Gain - ACKR1 ENSG00000213088 CDS Human protein_coding chr1:159176174 chr1:159176178 nonsynonymous SNV 0.003 3 25 hm5C_associated_SNPs_102711 0 0 0 0 0 Endoplasmic reticulum 0.50023167879318 0.500231672918809 0 0 hm5C_site_55856 DeepMRMD:0;iRNA_m5C:0 55857 chr13 37011840 37011840 1 + C A UCEC 37011836 + 37011816 37011856 41 AGCTGGAAAGAAAGCACTCCCTGACTGTGGGGTCCAAGAGC AGCTGGAAAGAAAGCACTCCCTGAATGTGGGGTCCAAGAGC < 41bp 0.371759644036841 0.79034738982085 0.009052217 0.09807545 prediction 0.5806947796417 Functional Gain - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37011836 chr13:37011840 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_102712 0 0 0 0 1 exosome 0.500231643923715 0.500231643921092 0 0 hm5C_site_55857 DeepMRMD:0;iRNA_m5C:0 55858 chr3 44636003 44636003 1 + T G BLCA 44636000 + 44635980 44636020 41 ATCCACACTGGACTGAAGCCCTATACATGCAGTGAATGTGG ATCCACACTGGACTGAAGCCCTAGACATGCAGTGAATGTGG < 41bp 0.424235634488934 0.790343409795021 0.13966101 0.12506142 prediction 0.580686819590042 Functional Gain - ZNF660 ENSG00000144792 CDS Human protein_coding chr3:44636000 chr3:44636003 stopgain 0.993 0 24 hm5C_associated_SNPs_102713 0 0 0 0 0 exosome 0.500248636363695 0.500231943406652 0 0 hm5C_site_55858 DeepMRMD:0;iRNA_m5C:0 55859 chr16 3238159 3238159 1 + C A rs373240512 3238155 + 3238135 3238175 41 GAGGTCCCGGGTTCAAATCCCGGACGAGCCCCCTTTTCCTT GAGGTCCCGGGTTCAAATCCCGGAAGAGCCCCCTTTTCCTT < 41bp 0.473438915831208 0.790335356186024 0.75536036 0.87693334 prediction 0.580670712372048 Functional Gain - CASP16P;OR1F1 ENSG00000262668 upstream Human antisense chr16:3238155 chr16:3238159 . . 0 25 hm5C_associated_SNPs_102714 0 0 0 0 0 unknown 0.500230958162533 0.500231643921093 0.24314596 1.37151711965267e-06 hm5C_site_55859 DeepMRMD:0.24314596;iRNA_m5C:1.37151711965267e-06 55860 chr12 52281884 52281884 1 + C A LUAD 52281880 + 52281860 52281900 41 TCTTGGGGCTGGTCTGAGTCCGCTCCTGAGACGTGACCACC TCTTGGGGCTGGTCTGAGTCCGCTACTGAGACGTGACCACC < 41bp 0.526567736825853 0.816901155408788 0.14880958 0.22876614 prediction 0.580666837165871 Functional Gain - ANKRD33 ENSG00000167612 UTR5 Human protein_coding chr12:52281880 chr12:52281884 . . 0 25 hm5C_associated_SNPs_102715 0 0 0 0 0 unknown 0.500231643834732 0.500231640356876 0 0 hm5C_site_55860 DeepMRMD:0;iRNA_m5C:0 55861 chr10 70496747 70496747 1 + T A OV 70496743 + 70496723 70496763 41 CACAAACTCCAGCAAACTATCAGTTAACACAAACTGCTGCA CACAAACTCCAGCAAACTATCAGTAAACACAAACTGCTGCA < 41bp 0.483372464571395 0.790326788302505 0.13467339 0.09543958 prediction 0.580653576605011 Functional Gain - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70496743 chr10:70496747 stopgain 1.000 1 25 hm5C_associated_SNPs_102716 0 0 1 0 1 Nucleus 0.500228535636669 0.500228087698781 0 0 hm5C_site_55861 DeepMRMD:0;iRNA_m5C:0 55862 chr13 114290383 114290383 1 + C A UCEC 114290379 + 114290359 114290399 41 CACCCAACTCAGTCATCCACCTGCCCTTCATCATCGTCAAC CACCCAACTCAGTCATCCACCTGCACTTCATCATCGTCAAC < 41bp 0.369646477877394 0.790288251210802 0.012647271 0.02203545 prediction 0.580576502421605 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114290379 chr13:114290383 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102717 0 0 1 0 2 Cytosol 0.500231643781694 0.500231647948833 0 8.33427882263038e-09 hm5C_site_55862 DeepMRMD:0;iRNA_m5C:8.33427882263038e-09 55863 chr11 551768 551768 1 + C A rs143185074 551764 + 551744 551784 41 TGCTGGTCCGTGGGGGCCCCCTGCCTGAAGGCCTGCTTTCT TGCTGGTCCGTGGGGGCCCCCTGCATGAAGGCCTGCTTTCT < 41bp 0.386496335935221 0.790277738147631 0.14592376 0.7851112 prediction 0.580555476295262 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551764 chr11:551768 nonsynonymous SNV 0.015 1 25 hm5C_associated_SNPs_102718 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921093 0.5702224 1.77635683940025e-15 hm5C_site_55863 DeepMRMD:0.5702224;iRNA_m5C:1.77635683940025e-15 55864 chr2 99802708 99802708 1 + C A ESCA 99802704 + 99802684 99802724 41 CTTAGTAGTTCAATGGCCCCCAGGCAGACTACAGGTAAGTG CTTAGTAGTTCAATGGCCCCCAGGAAGACTACAGGTAAGTG < 41bp 0.407809729748931 0.790276776305507 0.08319563 0.08226898 prediction 0.580553552611015 Functional Gain - MRPL30 ENSG00000185414;ENSG00000241962;ENSG00000273155 CDS Human other chr2:99802704 chr2:99802708 synonymous SNV . 0 25 hm5C_associated_SNPs_102719 0 0 1 3 2 Cytosol 0.500231643921092 0.500231643915376 0 0 hm5C_site_55864 DeepMRMD:0;iRNA_m5C:0 55865 chr8 105361446 105361446 1 + C A LUSC 105361442 + 105361422 105361462 41 ACTTGCCTTTGCAGGGCTTTCGCTCGTCCTGCTTGGCACTG ACTTGCCTTTGCAGGGCTTTCGCTAGTCCTGCTTGGCACTG < 41bp 0.620368445433202 0.910641866889503 0.33049387 0.41498458 prediction 0.580546842912602 Functional Gain - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361442 chr8:105361446 synonymous SNV . 0 25 hm5C_associated_SNPs_102720 0 0 0 0 0 exosome 0.500231655765309 0.500231643923983 0 0 hm5C_site_55865 DeepMRMD:0;iRNA_m5C:0 55866 chr22 21475925 21475925 1 + G T rs4822947 21475929 - 21475909 21475949 41 GCCAGGACAAGGGAGCCCACCGGGCCCAGATAGGTACAGAG GCCAGGACAAGGGAGCCCACCGGGACCAGATAGGTACAGAG < 41bp 0.570254460301145 0.860519964187034 0.43369615 0.7038399 prediction 0.580531007771779 Functional Gain - BCRP2 ENSG00000169668 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:21475929 chr22:21475925 . . 0 25 hm5C_associated_SNPs_102721 0 0 0 0 1 unknown 0.500231643898028 0.500231638314215 0.4076798 0 hm5C_site_55866 DeepMRMD:0.4076798;iRNA_m5C:0 55867 chr12 57843255 57843255 1 + T A rs532165478 57843251 + 57843231 57843271 41 TCACCTTGGCTACTCAGTACCTGCTGGAGGTGGATGCCAGT TCACCTTGGCTACTCAGTACCTGCAGGAGGTGGATGCCAGT < 41bp 0.524298849839103 0.814555882268791 0.11728525 0.2208445 prediction 0.580514064859376 Functional Gain - INHBC ENSG00000175189 CDS Human protein_coding chr12:57843251 chr12:57843255 nonsynonymous SNV 0.567 3 25 hm5C_associated_SNPs_102722 0 0 0 0 0 exosome 0.500232327239104 0.500231668382287 0 0 hm5C_site_55867 DeepMRMD:0;iRNA_m5C:0 55868 chr2 242814815 242814815 1 + T A OV 242814811 + 242814791 242814831 41 GCCACTAAAGAGGCCTCCATCACCTTCCCCTTCATCTTTAC GCCACTAAAGAGGCCTCCATCACCATCCCCTTCATCTTTAC < 41bp 0.528153156821974 0.818400510194116 0.22515514 0.19163746 prediction 0.580494706744285 Functional Gain - RTP5 ENSG00000188011 CDS Human protein_coding chr2:242814811 chr2:242814815 nonsynonymous SNV 0.027 1 25 hm5C_associated_SNPs_102723 0 0 0 0 0 exosome 0.500231643922306 0.500231643921578 0 0 hm5C_site_55868 DeepMRMD:0;iRNA_m5C:0 55869 chr17 7577517 7577517 1 + A C BRCA 7577519 - 7577499 7577539 41 CGGAGGCCCATCCTCACCATCATCACACTGGAAGACTCCAG CGGAGGCCCATCCTCACCATCAGCACACTGGAAGACTCCAG < 41bp 0.49805307380652 0.790234378190027 0.07379457 0.17679352 prediction 0.580468756380053 Functional Gain - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577519 chr17:7577517 nonsynonymous SNV 0.970 5 23 hm5C_associated_SNPs_102724 7 0 1 0 1 Ribosome 0.500231643916135 0.500231643920959 0 9.64717195017784e-12 hm5C_site_55869 DeepMRMD:0;iRNA_m5C:9.64717195017784e-12 Chronic lymphocytic leukemia Chronic lymphocytic leukemia 55870 chr2 70315374 70315374 1 + C A READ 70315370 + 70315350 70315390 41 GTCAAGCAGATTTGCCTGGTCATGCTGGAGACGCTCTCCCA GTCAAGCAGATTTGCCTGGTCATGATGGAGACGCTCTCCCA < 41bp 0.59470191222595 0.884931760891957 0.44357905 0.57499266 prediction 0.580459697332014 Functional Gain - PCBP1 ENSG00000169564 CDS Human protein_coding chr2:70315370 chr2:70315374 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102725 0 0 1 0 0 Cytosol 0.500231621364751 0.500231656910525 0.14998532 7.10915473156604e-08 hm5C_site_55870 DeepMRMD:0.14998532;iRNA_m5C:7.10915473156604e-08 55871 chr16 75611255 75611255 1 + T G UCEC 75611252 + 75611232 75611272 41 GTGGCCTACAGCGGAGAGAACACTTTTGGCTTCTGAGGGCC GTGGCCTACAGCGGAGAGAACACGTTTGGCTTCTGAGGGCC < 41bp 0.418314340351291 0.790214838807525 0.35982525 0.4264105 prediction 0.580429677615049 Functional Gain - GABARAPL2 ENSG00000034713 CDS Human protein_coding chr16:75611252 chr16:75611255 synonymous SNV . 0 24 hm5C_associated_SNPs_102726 0 0 1 1 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55871 DeepMRMD:0;iRNA_m5C:0 55872 chr6 29142069 29142069 1 + T G LUAD 29142066 + 29142046 29142086 41 CTCATTCTCATTCTCACTACCTATGGTGCCATTGCCCGGGC CTCATTCTCATTCTCACTACCTAGGGTGCCATTGCCCGGGC < 41bp 0.419405306751558 0.790213191984493 0.053764194 0.34723634 prediction 0.580426383968987 Functional Gain - OR2J2 ENSG00000204700 CDS Human protein_coding chr6:29142066 chr6:29142069 stopgain 0.308 0 24 hm5C_associated_SNPs_102727 0 0 0 0 0 unknown 0.500231644068503 0.500231650270872 0 1.24047383476267e-08 hm5C_site_55872 DeepMRMD:0;iRNA_m5C:1.24047383476267e-08 55873 chr20 42969881 42969881 1 + C G LUAD 42969880 + 42969860 42969900 41 GCTGCCGAAGCCTGGGCCACCCAGTGCATCTGGGCACATGG GCTGCCGAAGCCTGGGCCACCGAGTGCATCTGGGCACATGG < 41bp 0.487211351310788 0.790189957363744 0.088758856 0.6979695 prediction 0.580379914727487 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42969880 chr20:42969881 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_102728 0 0 0 0 2 cytosol 0.500231643921093 0.500231643532278 0.395939 0 hm5C_site_55873 DeepMRMD:0.395939;iRNA_m5C:0 55874 chr19 44222873 44222873 1 + C G LUAD 44222872 + 44222852 44222892 41 GCCTCCACGGAAAGCATCCGCCTGGAGGTGGGCGTCACGGG GCCTCCACGGAAAGCATCCGCGTGGAGGTGGGCGTCACGGG < 41bp 0.510197828728254 0.800378213152909 0.43638778 0.83838737 prediction 0.580360768849309 Functional Gain - IRGC ENSG00000124449 CDS Human protein_coding chr19:44222872 chr19:44222873 nonsynonymous SNV 0.751 2 22 hm5C_associated_SNPs_102729 0 0 0 0 0 unknown 0.500231643921093 0.500231643915777 0.67677474 0 hm5C_site_55874 DeepMRMD:0.67677474;iRNA_m5C:0 55875 chr17 14207654 14207654 1 + C A rs571669286 14207650 + 14207630 14207670 41 GCCCACTGTAAATGCCGCAACTGGCCCCAAACACTGCGTTC GCCCACTGTAAATGCCGCAACTGGACCCAAACACTGCGTTC < 41bp 0.438907253778385 0.790178371950949 0.2872994 0.5650183 prediction 0.580356743901899 Functional Gain - MGC12916 ENSG00000266709 ncRNA_exonic Human lincRNA chr17:14207650 chr17:14207654 . . 0 25 hm5C_associated_SNPs_102730 0 0 1 0 0 unknown 0.500231644067251 0.500231643921093 0.1300366 0 hm5C_site_55875 DeepMRMD:0.1300366;iRNA_m5C:0 55876 chr16 28601750 28601750 1 + C A COAD 28601746 + 28601726 28601766 41 CTGGCCGAGGTGGTCAGTTACAGCCATGCCACCAACAAGTG CTGGCCGAGGTGGTCAGTTACAGCAATGCCACCAACAAGTG < 41bp 0.622370776336247 0.912523269835557 0.6237036 0.7586142 prediction 0.580304986998619 Functional Gain - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28601746 chr16:28601750 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_102731 0 0 1 0 1 chromatin 0.500231643921184 0.500231626026114 0.2698212 0 hm5C_site_55876 DeepMRMD:0.2698212;iRNA_m5C:0 55877 chr13 28368082 28368082 1 + C A UCEC 28368078 + 28368058 28368098 41 CGACCGGGATCTTACGGTCACTCCCTAGGCGCGTGTCTCCC CGACCGGGATCTTACGGTCACTCCATAGGCGCGTGTCTCCC < 41bp 0.39693279135081 0.790136426095732 0.017385453 0.97493243 prediction 0.580272852191463 Functional Gain - GSX1 ENSG00000169840 CDS Human protein_coding chr13:28368078 chr13:28368082 synonymous SNV . 0 25 hm5C_associated_SNPs_102732 0 0 0 0 0 unknown 0.500231643922534 0.500231651316171 0.94986486 1.47872747380262e-08 hm5C_site_55877 DeepMRMD:0.94986486;iRNA_m5C:1.47872747380262e-08 55878 chr17 72588257 72588257 1 + C A LUSC 72588253 + 72588233 72588273 41 GAACAGAGCGTCTCTGTCTCCAAGCCAGCCGCTGTCATTCC GAACAGAGCGTCTCTGTCTCCAAGACAGCCGCTGTCATTCC < 41bp 0.599005131513852 0.889119214500701 0.2807594 0.12508404 prediction 0.580228165973699 Functional Gain - C17orf77 ENSG00000182352 CDS Human antisense chr17:72588253 chr17:72588257 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_102733 0 0 0 0 0 unknown 0.500233203833071 0.500231684695498 0 0 hm5C_site_55878 DeepMRMD:0;iRNA_m5C:0 55879 chr1 31984214 31984214 1 + C A rs138230333 31984210 + 31984190 31984230 41 CGGGCTGGAGAAGGCAGACCCACCCTTAATCTGGTGGGCAC CGGGCTGGAGAAGGCAGACCCACCATTAATCTGGTGGGCAC < 41bp 0.434937998511834 0.790063861563059 0.04280162 0.8378395 prediction 0.580127723126117 Functional Gain - LINC01226 ENSG00000223907 ncRNA_exonic Human other chr1:31984210 chr1:31984214 . . 0 25 hm5C_associated_SNPs_102734 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.675679 0 hm5C_site_55879 DeepMRMD:0.675679;iRNA_m5C:0 55880 chr11 88961080 88961080 1 + C G LGG 88961079 + 88961059 88961099 41 TATATGAATGGAACAATGTCCCAGGTACAGGGATCTGCCAA TATATGAATGGAACAATGTCCGAGGTACAGGGATCTGCCAA < 41bp 0.507576140903642 0.797625622040886 0.5853413 0.83187807 prediction 0.580098962274488 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:88961079 chr11:88961080 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_102735 0 0 0 0 2 unknown 0.500231644404801 0.500231643929947 0.49307354 0 hm5C_site_55880 DeepMRMD:0.49307354;iRNA_m5C:0 55881 chr2 125547594 125547594 1 + C A COAD 125547590 + 125547570 125547610 41 GGTCACATCTGGAGTCAGGCCAGGCTGCCCCGGCCACTGCA GGTCACATCTGGAGTCAGGCCAGGATGCCCCGGCCACTGCA < 41bp 0.491875382566145 0.790049264201799 0.44173786 0.71613705 prediction 0.580098528403599 Functional Gain - CNTNAP5 ENSG00000155052 CDS Human protein_coding chr2:125547590 chr2:125547594 synonymous SNV . 0 25 hm5C_associated_SNPs_102736 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921093 0.4322741 2.22044604925031e-16 hm5C_site_55881 DeepMRMD:0.4322741;iRNA_m5C:2.22044604925031e-16 55882 chr19 56466523 56466523 1 + C G rs11880748 56466522 + 56466502 56466542 41 ATGGAAAAAATCAAGTATTTCCAGATGTATTTTGGACACAC ATGGAAAAAATCAAGTATTTCGAGATGTATTTTGGACACAC < 41bp 0.488123385175796 0.790036985895036 0.5182825 0.67360735 prediction 0.580073971790072 Functional Gain - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56466522 chr19:56466523 nonsynonymous SNV 0.044 0 22 hm5C_associated_SNPs_102737 0 0 0 0 0 unknown 0.500231636377566 0.50023158408363 0.3106497 0 hm5C_site_55882 DeepMRMD:0.3106497;iRNA_m5C:0 55883 chr5 75948620 75948620 1 + C A rs35366349 75948616 + 75948596 75948636 41 CAACGGAAGGAGTATATGCACAGGCGGCAAACGTTCATTGA CAACGGAAGGAGTATATGCACAGGAGGCAAACGTTCATTGA < 41bp 0.414029510266377 0.790036856216551 0.3005861 0.36422324 prediction 0.580073712433102 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75948616 chr5:75948620 synonymous SNV . 0 25 hm5C_associated_SNPs_102738 0 0 1 0 2 Cytosol 0.500231643926264 0.500231643921093 0 0 hm5C_site_55883 DeepMRMD:0;iRNA_m5C:0 55884 chr5 1217016 1217016 1 + C A LUSC 1217012 + 1216992 1217032 41 GCCTCCGACCCCGCGGCCTACGCGCAGCTGGTGTTCCAGAC GCCTCCGACCCCGCGGCCTACGCGAAGCTGGTGTTCCAGAC < 41bp 0.625437222135869 0.915462143226372 0.060514152 0.16921374 prediction 0.580049842181006 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1217012 chr5:1217016 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_102739 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_55884 DeepMRMD:0;iRNA_m5C:0 55885 chr12 111342586 111342586 1 + T A rs142416969 111342582 + 111342562 111342602 41 GGGGCTGACCCCTTCAGCGACAGGTTGGATGATGGTGAGTT GGGGCTGACCCCTTCAGCGACAGGATGGATGATGGTGAGTT < 41bp 0.489048243437248 0.789993409074754 0.20075965 0.3413492 prediction 0.579986818149508 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111342582 chr12:111342586 nonsynonymous SNV 0.040 1 25 hm5C_associated_SNPs_102740 0 0 0 0 1 exosome 0.500231643921894 0.500231643920814 0 0 hm5C_site_55885 DeepMRMD:0;iRNA_m5C:0 55886 chr5 140475698 140475698 1 + C A PRAD 140475694 + 140475674 140475714 41 AAAACCGAGCACAACATAACCGTGCTGGTCTCCGACGTCAA AAAACCGAGCACAACATAACCGTGATGGTCTCCGACGTCAA < 41bp 0.405524400753091 0.789992524851908 0.08503261 0.07516149 prediction 0.579985049703815 Functional Gain - PCDHB2 ENSG00000112852 CDS Human protein_coding chr5:140475694 chr5:140475698 nonsynonymous SNV 0.055 0 25 hm5C_associated_SNPs_102741 0 0 0 0 0 exosome 0.500231643932988 0.500231643654091 0 0 hm5C_site_55886 DeepMRMD:0;iRNA_m5C:0 55887 chr17 76227658 76227658 1 + C A LIHC 76227654 + 76227634 76227674 41 AGCACGGGTGGGTGGTCCTGCTGCCTGGCCGGCCATCCTCC AGCACGGGTGGGTGGTCCTGCTGCATGGCCGGCCATCCTCC < 41bp 0.598490357512421 0.888437455944247 0.34992924 0.5218994 prediction 0.579894196863651 Functional Gain - TMEM235 ENSG00000204278 CDS Human protein_coding chr17:76227654 chr17:76227658 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_102742 0 0 0 0 0 exosome 0.500231643921092 0.500231643960792 0.0437988 7.93998200521173e-11 hm5C_site_55887 DeepMRMD:0.0437988;iRNA_m5C:7.93998200521173e-11 55888 chr21 34399313 34399313 1 + C G LUSC 34399312 + 34399292 34399332 41 CGTCCACCCCGAGTGACTGCCCGCCGGAGCTGAGCGCCGAG CGTCCACCCCGAGTGACTGCCGGCCGGAGCTGAGCGCCGAG < 41bp 0.490887755715396 0.789884375463069 0.05046898 0.3850642 prediction 0.579768750926137 Functional Gain - OLIG2 ENSG00000205927 CDS Human protein_coding chr21:34399312 chr21:34399313 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_102743 0 0 1 0 0 exosome 0.50023164391312 0.500231643898256 0 0 hm5C_site_55888 DeepMRMD:0;iRNA_m5C:0 55889 chr2 47251485 47251485 1 + C A LAML 47251481 + 47251461 47251501 41 TCCTCTATGTCTCGCTGCAGCTGGCCCTCGTCCGACAGGTG TCCTCTATGTCTCGCTGCAGCTGGACCTCGTCCGACAGGTG < 41bp 0.386082868417174 0.789879823452335 0.17080331 0.2909341 prediction 0.579759646904671 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47251481 chr2:47251485 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_102744 0 0 0 0 2 Nucleus 0.500231296246863 0.500229938216757 0 0 hm5C_site_55889 DeepMRMD:0;iRNA_m5C:0 55890 chr11 60699265 60699265 1 + C G BLCA 60699264 + 60699244 60699284 41 TCACGTGGCAGCTGGAGTACCCAGGCCAGGCCCCTGAAGCA TCACGTGGCAGCTGGAGTACCGAGGCCAGGCCCCTGAAGCA < 41bp 0.513297729199457 0.803175657846865 0.87669057 0.8983104 prediction 0.579755857294816 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699264 chr11:60699265 nonsynonymous SNV 0.988 1 22 hm5C_associated_SNPs_102745 0 0 1 0 1 Ribosome 0.500231645002055 0.50023166437702 0.04323966 3.87499308196482e-08 hm5C_site_55890 DeepMRMD:0.04323966;iRNA_m5C:3.87499308196482e-08 55891 chr16 31213926 31213926 1 + G T BLCA 31213930 - 31213910 31213950 41 AGAAGTTCAAGCTGAAGCTGCTGTCGGTGCCGCTGCGCGAG AGAAGTTCAAGCTGAAGCTGCTGTAGGTGCCGCTGCGCGAG < 41bp 0.41136991620103 0.789864954388694 0.2228804 0.71218497 prediction 0.579729908777387 Functional Gain - PYCARD ENSG00000103490;ENSG00000261359 CDS Human other chr16:31213930 chr16:31213926 stopgain 0.225 0 25 hm5C_associated_SNPs_102746 0 0 0 0 0 Ribosome 0.49947486262373 0.500230156591968 0.42436994 0.000460313183936689 hm5C_site_55891 DeepMRMD:0.42436994;iRNA_m5C:0.000460313183936689 55892 chr20 43379280 43379280 1 + C A SKCM 43379276 + 43379256 43379296 41 CTGCCCGCACCCCCAGCCCGCGCCCCCCGGGGGCGCCCGAG CTGCCCGCACCCCCAGCCCGCGCCACCCGGGGGCGCCCGAG < 41bp 0.592697178406142 0.882547242296071 0.44011366 0.6895837 prediction 0.579700127779857 Functional Gain - KCNK15 ENSG00000124249 CDS Human protein_coding chr20:43379276 chr20:43379280 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_102747 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921122 0.3791674 5.90638649100583e-14 hm5C_site_55892 DeepMRMD:0.3791674;iRNA_m5C:5.90638649100583e-14 55893 chr10 114053546 114053546 1 + C G LIHC 114053545 + 114053525 114053565 41 TCCCTTTGTCCTGGAGGCATCCGAAATCGGTTCAGATCTGT TCCCTTTGTCCTGGAGGCATCGGAAATCGGTTCAGATCTGT < 41bp 0.48534794519955 0.789846195147694 0.15946487 0.28839117 prediction 0.579692390295389 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114053545 chr10:114053546 synonymous SNV . 0 22 hm5C_associated_SNPs_102748 0 0 0 0 2 unknown 0.500231641006506 0.500231643921075 0 5.82913939339846e-09 hm5C_site_55893 DeepMRMD:0;iRNA_m5C:5.82913939339846e-09 55894 chr7 116759737 116759737 1 + T G LUAD 116759734 + 116759714 116759754 41 TCTTCCAACAATTCTAATTCCAGTAACGGGGACTCAGATTC TCTTCCAACAATTCTAATTCCAGGAACGGGGACTCAGATTC < 41bp 0.593816827556959 0.883640089491804 0.038779944 0.29201078 prediction 0.579646523869691 Functional Gain - ST7 ENSG00000004866 CDS Human protein_coding chr7:116759734 chr7:116759737 nonsynonymous SNV 0.886 2 24 hm5C_associated_SNPs_102749 0 0 1 0 1 Cytosol 0.500231643897878 0.500163263698809 0 0 hm5C_site_55894 DeepMRMD:0;iRNA_m5C:0 55895 chr19 501843 501843 1 + C A rs113534319 501839 + 501819 501859 41 CCCCCCAGCAGGGCTCCACACACACCCCCAGGAGCCCAGGC CCCCCCAGCAGGGCTCCACACACAACCCCAGGAGCCCAGGC < 41bp 0.398351477812947 0.789803744687732 0.09431827 0.13364607 prediction 0.579607489375464 Functional Gain - MADCAM1 ENSG00000099866 CDS Human protein_coding chr19:501839 chr19:501843 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102750 0 0 0 0 1 cytosol 0.500231643920792 0.500231643921092 0 6.00852700927135e-13 hm5C_site_55895 DeepMRMD:0;iRNA_m5C:6.00852700927135e-13 55896 chr4 81283921 81283921 1 + C A LUSC 81283917 + 81283897 81283937 41 TTTCTCTCTAGGATGAAACCCTGGCCCGCCAGTTGGTGGAG TTTCTCTCTAGGATGAAACCCTGGACCGCCAGTTGGTGGAG < 41bp 0.444210309945863 0.789802896767794 0.27687484 0.41386384 prediction 0.579605793535589 Functional Gain - C4orf22 ENSG00000197826 CDS Human protein_coding chr4:81283917 chr4:81283921 nonsynonymous SNV 0.958 4 25 hm5C_associated_SNPs_102751 0 0 0 0 1 chromatin 0.500231643921124 0.500231643922298 0 2.34812169708221e-12 hm5C_site_55896 DeepMRMD:0;iRNA_m5C:2.34812169708221e-12 55897 chr5 162001 162001 1 + C A ESCA 161997 + 161977 162017 41 GCCTGAGCGCCGTGGTCAGCCAGGCTGAGTGCAGGGAGGGA GCCTGAGCGCCGTGGTCAGCCAGGATGAGTGCAGGGAGGGA < 41bp 0.395917133493174 0.789780629172612 0.71489716 0.6395822 prediction 0.579561258345225 Functional Gain - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:161997 chr5:162001 nonsynonymous SNV 0.094 2 25 hm5C_associated_SNPs_102752 0 0 0 0 1 exosome 0.500231617680598 0.500231733818441 0 2.32275685796424e-07 hm5C_site_55897 DeepMRMD:0;iRNA_m5C:2.32275685796424e-07 55898 chr19 5456251 5456251 1 + C A SKCM 5456247 + 5456227 5456267 41 CGTGCCACGACCTGGGCTGTCACCCCGTGCTGACCGTGTCC CGTGCCACGACCTGGGCTGTCACCACGTGCTGACCGTGTCC < 41bp 0.603578466599173 0.893330451113354 0.11546078 0.32916045 prediction 0.579503969028361 Functional Gain - ZNRF4 ENSG00000105428 CDS Human protein_coding chr19:5456247 chr19:5456251 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_102753 0 0 0 0 0 unknown 0.500230605464946 0.500231652611718 0 2.09429354480761e-06 hm5C_site_55898 DeepMRMD:0;iRNA_m5C:2.09429354480761e-06 55899 chr19 15769342 15769342 1 + C A STAD 15769338 + 15769318 15769358 41 AGTGTTTTTGGAACCCATCACAACCCAGCCGTGTGGCCGGA AGTGTTTTTGGAACCCATCACAACACAGCCGTGTGGCCGGA < 41bp 0.372609407559248 0.789750937170637 0.075880975 0.100604415 prediction 0.579501874341275 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769338 chr19:15769342 nonsynonymous SNV 0.389 4 25 hm5C_associated_SNPs_102754 0 0 1 0 2 exosome 0.500231636532392 0.500231314683413 0 0 hm5C_site_55899 DeepMRMD:0;iRNA_m5C:0 55900 chrX 48371067 48371067 1 + C A COAD 48371063 + 48371043 48371083 41 ACTTGCGTGGGCCCCTACCTCTTCCCGTACTTCATCCCCCT ACTTGCGTGGGCCCCTACCTCTTCACGTACTTCATCCCCCT < 41bp 0.370408901906741 0.789749116675314 0.34661263 0.26450312 prediction 0.579498233350627 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48371063 chrX:48371067 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_102755 0 0 0 0 2 nucleolus 0.500231719743005 0.500231643921225 0 0 hm5C_site_55900 DeepMRMD:0;iRNA_m5C:0 55901 chr17 40704916 40704916 1 + A C rs201739205 40704918 - 40704898 40704938 41 GGAGAGGCTGGGGCTCTGGGCTTGATATCACCTGCTTCGCC GGAGAGGCTGGGGCTCTGGGCTGGATATCACCTGCTTCGCC < 41bp 0.507291046300678 0.797035919064693 0.076049894 0.20084375 prediction 0.579489745528029 Functional Gain - LOC108783654 ENSG00000266962 ncRNA_exonic Human antisense chr17:40704918 chr17:40704916 . . 0 23 hm5C_associated_SNPs_102756 0 0 0 0 0 unknown 0.500231639706738 0.500231643919678 0 8.42588021576773e-09 hm5C_site_55901 DeepMRMD:0;iRNA_m5C:8.42588021576773e-09 55902 chr8 125487370 125487370 1 + C A rs546566054 125487366 + 125487346 125487386 41 GGCTCATGGCGGCCGTGGGGCCCCCGCAGCAGCAGGTGCGG GGCTCATGGCGGCCGTGGGGCCCCAGCAGCAGCAGGTGCGG < 41bp 0.423309033140306 0.789731498401871 0.12705502 0.13751623 prediction 0.579462996803742 Functional Gain - RNF139 ENSG00000170881 CDS Human protein_coding chr8:125487366 chr8:125487370 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_102757 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_55902 DeepMRMD:0;iRNA_m5C:0 55903 chr18 72998785 72998785 1 + C G BRCA 72998784 + 72998764 72998804 41 ATCCCACTACCGCCCACCACCCACACGCGGCTGCCGGCCTC ATCCCACTACCGCCCACCACCGACACGCGGCTGCCGGCCTC < 41bp 0.541146327625362 0.83086920663802 0.04039687 0.122807235 prediction 0.579445758025317 Functional Gain - TSHZ1 ENSG00000179981 CDS Human protein_coding chr18:72998784 chr18:72998785 nonsynonymous SNV 0.926 1 22 hm5C_associated_SNPs_102758 0 0 1 0 0 Cytosol 0.500231677467426 0.50023168469838 0 1.44619070052698e-08 hm5C_site_55903 DeepMRMD:0;iRNA_m5C:1.44619070052698e-08 55904 chr14 101195327 101195327 1 + C A LUAD 101195323 + 101195303 101195343 41 TGACCAGTGCGTGACCTCTCCCGGCTGCCTTCACGGACTCT TGACCAGTGCGTGACCTCTCCCGGATGCCTTCACGGACTCT < 41bp 0.389922140388072 0.789704178039376 0.73948336 0.57475543 prediction 0.579408356078751 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101195323 chr14:101195327 synonymous SNV . 0 25 hm5C_associated_SNPs_102759 0 0 1 0 2 Endoplasmic reticulum 0.50023164399616 0.500231643927402 0 0 hm5C_site_55904 DeepMRMD:0;iRNA_m5C:0 55905 chr2 38407627 38407627 1 + C A BRCA 38407623 + 38407603 38407643 41 CCACTCTGGATCCAGCCACTCTGGCACAGCGTTCTTGCTCT CCACTCTGGATCCAGCCACTCTGGAACAGCGTTCTTGCTCT < 41bp 0.581590029279112 0.871290453780149 0.24673697 0.54986715 prediction 0.579400849002073 Functional Gain - CYP1B1-AS1 ENSG00000232973 ncRNA_exonic Human antisense chr2:38407623 chr2:38407627 . . 0 25 hm5C_associated_SNPs_102760 0 0 0 0 0 unknown 0.500236614519326 0.50024136687774 0.0997342999999999 9.50471682803489e-06 hm5C_site_55905 DeepMRMD:0.0997342999999999;iRNA_m5C:9.50471682803489e-06 55906 chrX 150349070 150349070 1 + C A HNSC 150349066 + 150349046 150349086 41 GAGGCCCGTACCCTGGCCCGCGCCCGTGCCCATGCTCGCGA GAGGCCCGTACCCTGGCCCGCGCCAGTGCCCATGCTCGCGA < 41bp 0.620007784143869 0.909705564517333 0.12894306 0.1699419 prediction 0.579395560746928 Functional Gain - GPR50 ENSG00000102195 CDS Human protein_coding chrX:150349066 chrX:150349070 nonsynonymous SNV 0.013 1 25 hm5C_associated_SNPs_102761 0 0 0 0 0 exosome 0.500231643921091 0.500231643920578 0 0 hm5C_site_55906 DeepMRMD:0;iRNA_m5C:0 55907 chr2 1507794 1507794 1 + T A LUSC 1507790 + 1507770 1507810 41 AGGTGCAGAAACACCAAAGGCGGCTTCCAGTGTCTCTGCGC AGGTGCAGAAACACCAAAGGCGGCATCCAGTGTCTCTGCGC < 41bp 0.51872161133993 0.808406529222324 0.23630512 0.2716266 prediction 0.579369835764789 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1507790 chr2:1507794 nonsynonymous SNV 0.071 2 25 hm5C_associated_SNPs_102762 0 0 0 0 2 exosome 0.500231644328117 0.500231643583518 0 0 hm5C_site_55907 DeepMRMD:0;iRNA_m5C:0 55908 chr4 100010044 100010044 1 + C A rs29001342 100010040 + 100010020 100010060 41 TGCGTTCCAGGGTGCACTCGCCGGCGAGGCTGCACGGCGCC TGCGTTCCAGGGTGCACTCGCCGGAGAGGCTGCACGGCGCC < 41bp 0.561518800367029 0.851197582913517 0.90048987 0.90809476 prediction 0.579357565092977 Functional Gain - LOC100507053 ENSG00000246090 ncRNA_exonic Human antisense chr4:100010040 chr4:100010044 . . 0 25 hm5C_associated_SNPs_102763 0 0 1 0 0 unknown 0.500231643425865 0.500231643920855 0.01520978 9.89980319943129e-10 hm5C_site_55908 DeepMRMD:0.01520978;iRNA_m5C:9.89980319943129e-10 55909 chr5 126887416 126887416 1 + C A UCEC 126887412 + 126887392 126887432 41 TCCACAGGCTCAAAGTCTAACTCCCCAGGACTATAATCTGA TCCACAGGCTCAAAGTCTAACTCCACAGGACTATAATCTGA < 41bp 0.451982135064032 0.789661730424914 0.0580329 0.94066143 prediction 0.579323460849828 Functional Gain - PRRC1 ENSG00000164244 CDS Human protein_coding chr5:126887412 chr5:126887416 synonymous SNV . 0 25 hm5C_associated_SNPs_102764 0 0 1 0 1 Nucleus 0.500231643921093 0.500231643972919 0.88132286 1.03652864069659e-10 hm5C_site_55909 DeepMRMD:0.88132286;iRNA_m5C:1.03652864069659e-10 55910 chr17 36918703 36918703 1 + C A PRAD 36918699 + 36918679 36918719 41 TTTGAAACCATCTCCCAAGCCATGCTGAATGCTGTGGACCG TTTGAAACCATCTCCCAAGCCATGATGAATGCTGTGGACCG < 41bp 0.386664627327878 0.789656897043767 0.07151693 0.111932576 prediction 0.579313794087534 Functional Gain - PSMB3 ENSG00000108294 CDS Human other chr17:36918699 chr17:36918703 stopgain 0.999 1 25 hm5C_associated_SNPs_102765 0 0 1 0 2 Ribosome 0.500231597418366 0.500231644046676 0 9.32566204259189e-08 hm5C_site_55910 DeepMRMD:0;iRNA_m5C:9.32566204259189e-08 55911 chr9 125512715 125512715 1 + C A BRCA 125512711 + 125512691 125512731 41 TCCTGCTCTGACACATCCTCCAGCCAGATGGTGGTGATGAC TCCTGCTCTGACACATCCTCCAGCAAGATGGTGGTGATGAC < 41bp 0.400508283781752 0.789639119199511 0.10463837 0.059150517 prediction 0.579278238399022 Functional Gain - OR1L6 ENSG00000171459 CDS Human protein_coding chr9:125512711 chr9:125512715 nonsynonymous SNV 0.159 2 25 hm5C_associated_SNPs_102766 0 0 0 0 0 unknown 0.500231997367399 0.50023164925411 0 0 hm5C_site_55911 DeepMRMD:0;iRNA_m5C:0 55912 chr3 186395391 186395391 1 + C A LUSC 186395387 + 186395367 186395407 41 GGTCACTGTTGCCATGGCCACGGCCCACCACCTGGGCACTT GGTCACTGTTGCCATGGCCACGGCACACCACCTGGGCACTT < 41bp 0.607795425074266 0.897434214889672 0.77821076 0.53284675 prediction 0.579277579630813 Functional Gain - HRG ENSG00000113905 CDS Human protein_coding chr3:186395387 chr3:186395391 nonsynonymous SNV 0.098 2 25 hm5C_associated_SNPs_102767 0 0 0 0 0 exosome 0.50023164392114 0.500231644596105 0 1.34992994560434e-09 hm5C_site_55912 DeepMRMD:0;iRNA_m5C:1.34992994560434e-09 55913 chr10 122334686 122334686 1 + C A COAD 122334682 + 122334662 122334702 41 CTTCACGACGTTCTACTTGGCGGGCAAGCTGCACTGCTTCA CTTCACGACGTTCTACTTGGCGGGAAAGCTGCACTGCTTCA < 41bp 0.604452416865782 0.89408276571326 0.83396333 0.8707773 prediction 0.579260697694957 Functional Gain - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122334682 chr10:122334686 synonymous SNV . 0 25 hm5C_associated_SNPs_102768 0 0 0 0 1 Cytosol 0.500231637383034 0.500224763503523 0.0736279399999999 0 hm5C_site_55913 DeepMRMD:0.0736279399999999;iRNA_m5C:0 55914 chr1 4484397 4484397 1 + C A rs189048768 4484393 + 4484373 4484413 41 CCCGTCTGTGGTCCCCTGTCCTGGCAGCCCTAGGAACCTGA CCCGTCTGTGGTCCCCTGTCCTGGAAGCCCTAGGAACCTGA < 41bp 0.433754475025479 0.789626567121374 0.54385066 0.53433585 prediction 0.579253134242748 Functional Gain - LINC01777 ENSG00000235054 ncRNA_exonic Human lincRNA chr1:4484393 chr1:4484397 . . 0 25 hm5C_associated_SNPs_102769 0 0 0 0 0 unknown 0.500231643921125 0.500231643928439 0 1.46282985724611e-11 hm5C_site_55914 DeepMRMD:0;iRNA_m5C:1.46282985724611e-11 55915 chr11 607597 607597 1 + T A UCEC 607593 + 607573 607613 41 TCCCCAGTGCCTGCATCAGCCGACTGACTGGCAGGGAGGGC TCCCCAGTGCCTGCATCAGCCGACAGACTGGCAGGGAGGGC < 41bp 0.514761453629639 0.804378151515818 0.33432847 0.333443 prediction 0.579233395772358 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:607593 chr11:607597 nonsynonymous SNV 0.343 4 25 hm5C_associated_SNPs_102770 0 0 1 0 0 Nucleus 0.500231643703503 0.500231628681634 0 0 hm5C_site_55915 DeepMRMD:0;iRNA_m5C:0 55916 chr7 100469244 100469244 1 + C A STAD 100469240 + 100469220 100469260 41 GGGCTATGGGGAAGGCCTACCACCCTGGCTGCTTCACCTGC GGGCTATGGGGAAGGCCTACCACCATGGCTGCTTCACCTGC < 41bp 0.620266852859408 0.909865197979385 0.28776157 0.45963475 prediction 0.579196690239954 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100469240 chr7:100469244 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_102771 0 0 1 0 2 Ribosome 0.500231680021629 0.500231643924054 0 0 hm5C_site_55916 DeepMRMD:0;iRNA_m5C:0 55917 chr3 133529974 133529974 1 + C A UCEC 133529970 + 133529950 133529990 41 GCCATCCCCAGGGCAATAGTCTGACCTTGATTGACCTTCCC GCCATCCCCAGGGCAATAGTCTGAACTTGATTGACCTTCCC < 41bp 0.380401023895164 0.789578949037391 0.43075404 0.4005615 prediction 0.579157898074781 Functional Gain - SRPRB ENSG00000144867 CDS Human protein_coding chr3:133529970 chr3:133529974 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_102772 0 0 1 0 2 Ribosome 0.500233378985305 0.500231687935307 0 0 hm5C_site_55917 DeepMRMD:0;iRNA_m5C:0 55918 chr12 4398109 4398109 1 + T G LUSC 4398107 + 4398087 4398127 41 TGAGGAAGTGAGCTCGCTCACTTGTGATGCCCTGACTGAGC TGAGGAAGTGAGCTCGCTCACTGGTGATGCCCTGACTGAGC < 41bp 0.558767205612044 0.848340344976618 0.11331311 0.47437215 prediction 0.579146278729148 Functional Gain - CCND2 ENSG00000118971 CDS Human protein_coding chr12:4398107 chr12:4398109 nonsynonymous SNV 0.801 0 23 hm5C_associated_SNPs_102773 0 0 1 0 1 Ribosome 0.500217989520254 0.500219757214533 0 3.53538855923929e-06 hm5C_site_55918 DeepMRMD:0;iRNA_m5C:3.53538855923929e-06 55919 chr16 77229526 77229526 1 + C A rs555921616 77229522 + 77229502 77229542 41 CATGCTCGTCTCCACAGCACCTCCCGACCCCTGCGCCTCAT CATGCTCGTCTCCACAGCACCTCCAGACCCCTGCGCCTCAT < 41bp 0.357774514248595 0.789553237436719 0.026070565 0.96060973 prediction 0.579106474873437 Functional Gain - MON1B ENSG00000103111 CDS Human protein_coding chr16:77229522 chr16:77229526 synonymous SNV . 0 25 hm5C_associated_SNPs_102774 0 0 0 0 2 Ribosome 0.500233975813261 0.500232520069627 0.92121946 0 hm5C_site_55919 DeepMRMD:0.92121946;iRNA_m5C:0 55920 chr11 5624607 5624607 1 + T A BRCA 5624603 + 5624583 5624623 41 CCTGCCCTATCTGCCTGGAGCTCCTAACAGAACCCCTGAGC CCTGCCCTATCTGCCTGGAGCTCCAAACAGAACCCCTGAGC < 41bp 0.452760818004123 0.78955109718671 0.11632669 0.42789352 prediction 0.579102194373421 Functional Gain - TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5624603 chr11:5624607 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_102775 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_55920 DeepMRMD:0;iRNA_m5C:0 55921 chr21 31768599 31768599 1 + C A SARC 31768595 + 31768575 31768615 41 GCAGACCTGCTGGGAGCCCACCAGCTGCCAGACATCCTATG GCAGACCTGCTGGGAGCCCACCAGATGCCAGACATCCTATG < 41bp 0.589547446117358 0.879090734788969 0.3531842 0.40211576 prediction 0.579086577343222 Functional Gain - KRTAP13-1 ENSG00000198390 CDS Human protein_coding chr21:31768595 chr21:31768599 nonsynonymous SNV 0.064 0 25 hm5C_associated_SNPs_102776 0 0 0 0 0 unknown 0.500231643924503 0.500231602279892 0 0 hm5C_site_55921 DeepMRMD:0;iRNA_m5C:0 55922 chr3 32200577 32200577 1 + C G rs200392121 32200576 + 32200556 32200596 41 AGGGCGGAACCGCAGGGTGGCCGAGGCCTTCGCCAGAACTG AGGGCGGAACCGCAGGGTGGCGGAGGCCTTCGCCAGAACTG < 41bp 0.49834980955272 0.789539190090175 0.81351364 0.910414 prediction 0.57907838018035 Functional Gain - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32200576 chr3:32200577 synonymous SNV . 0 22 hm5C_associated_SNPs_102777 0 0 0 0 1 Cytosol 0.500231813675967 0.500231415425334 0.19380072 0 hm5C_site_55922 DeepMRMD:0.19380072;iRNA_m5C:0 55923 chr7 130007388 130007388 1 + G T rs17854248 130007392 - 130007372 130007412 41 CAACTCCCTCTGATTTGAAACGGGCTCCAGCAATCGGCCGT CAACTCCCTCTGATTTGAAACGGGATCCAGCAATCGGCCGT < 41bp 0.577370173780903 0.86690650073914 0.51260364 0.6052197 prediction 0.579072653916472 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130007392 chr7:130007388 nonsynonymous SNV 0.300 1 25 hm5C_associated_SNPs_102778 0 0 0 0 0 exosome 0.50023164391829 0.500231643921093 0.18523212 5.60529400672749e-12 hm5C_site_55923 DeepMRMD:0.18523212;iRNA_m5C:5.60529400672749e-12 55924 chr8 67040549 67040549 1 + C G LUAD 67040548 + 67040528 67040568 41 GGCAAGAACAGGCCTCTAACCCGTATTTGCCCACAAGAGGA GGCAAGAACAGGCCTCTAACCGGTATTTGCCCACAAGAGGA < 41bp 0.514586668874639 0.804121774583703 0.30574816 0.65011144 prediction 0.579070211418129 Functional Gain - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67040548 chr8:67040549 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_102779 0 0 0 0 1 exosome 0.500231643921092 0.500231643920799 0.30022288 0 hm5C_site_55924 DeepMRMD:0.30022288;iRNA_m5C:0 55925 chrX 152770291 152770291 1 + C A UCEC 152770287 + 152770267 152770307 41 AGCGCCATGTGTCCTTTCGGCTGCCACTGCCACCTGCGGGT AGCGCCATGTGTCCTTTCGGCTGCAACTGCCACCTGCGGGT < 41bp 0.377009930476149 0.789534825264954 0.10970849 0.11490655 prediction 0.579069650529909 Functional Gain - BGN ENSG00000182492 CDS Human protein_coding chrX:152770287 chrX:152770291 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_102780 0 0 1 0 1 Cytosol 0.500231643925158 0.500231642799463 0 0 hm5C_site_55925 DeepMRMD:0;iRNA_m5C:0 55926 chr19 18499608 18499608 1 + C G LUSC 18499607 + 18499587 18499627 41 ATCAAGACGAGCCTGCACCGCCTGAAGCCCGACACGGTGCC ATCAAGACGAGCCTGCACCGCGTGAAGCCCGACACGGTGCC < 41bp 0.486753707462968 0.789533666136777 0.28203392 0.4038191 prediction 0.579067332273554 Functional Gain - GDF15 ENSG00000130513 CDS Human protein_coding chr19:18499607 chr19:18499608 nonsynonymous SNV 0.017 0 22 hm5C_associated_SNPs_102781 0 0 1 0 0 Ribosome 0.500231643924258 0.500231634987323 0 0 hm5C_site_55926 DeepMRMD:0;iRNA_m5C:0 55927 chr16 4387757 4387757 1 + T G rs114705511 4387754 + 4387734 4387774 41 GCTCCTGGGTGCTGAAGCCTCGCTCCTGTCTGTCCCCCACC GCTCCTGGGTGCTGAAGCCTCGCGCCTGTCTGTCCCCCACC < 41bp 0.411876552348979 0.789530720711365 0.20913523 0.38224578 prediction 0.57906144142273 Functional Gain - GLIS2 ENSG00000262712 ncRNA_exonic Human sense_intronic chr16:4387754 chr16:4387757 . . 0 24 hm5C_associated_SNPs_102782 1 0 0 0 0 Endoplasmic reticulum 0.500231642498266 0.500231635614946 0 0 hm5C_site_55927 DeepMRMD:0;iRNA_m5C:0 Nephronophthisis Nephronophthisis 55928 chr1 13910431 13910431 1 + C A HNSC 13910427 + 13910407 13910447 41 CTCCGGCCCCCCCACCGTCGCGCTCCTCCAGGCTGGGCCTG CTCCGGCCCCCCCACCGTCGCGCTACTCCAGGCTGGGCCTG < 41bp 0.424906758964477 0.789503403883189 0.07094315 0.21308485 prediction 0.579006807766378 Functional Gain - PDPN ENSG00000162493 CDS Human protein_coding chr1:13910427 chr1:13910431 nonsynonymous SNV 0.009 2 25 hm5C_associated_SNPs_102783 0 0 1 0 0 Ribosome 0.500231640701698 0.500231643921092 0 6.43878794726049e-09 hm5C_site_55928 DeepMRMD:0;iRNA_m5C:6.43878794726049e-09 55929 chr11 118997679 118997679 1 + C G CESC 118997678 + 118997658 118997698 41 CCGCCTCCTGGGAAAGTTCCCCGAAAGGAGAATCTGTGGCT CCGCCTCCTGGGAAAGTTCCCGGAAAGGAGAATCTGTGGCT < 41bp 0.508732881456479 0.79823507294986 0.21394938 0.36007702 prediction 0.579004382986763 Functional Gain - HINFP ENSG00000172273 CDS Human protein_coding chr11:118997678 chr11:118997679 nonsynonymous SNV 0.967 1 22 hm5C_associated_SNPs_102784 0 0 1 0 0 Cytosol 0.500231643921093 0.500231643921092 0 0 hm5C_site_55929 DeepMRMD:0;iRNA_m5C:0 55930 chr16 30787162 30787162 1 + C A rs556461788 30787158 + 30787138 30787178 41 GCGCCTTCGGACCCTATTGGCGCCCGGGACTTAAGCGGGGC GCGCCTTCGGACCCTATTGGCGCCAGGGACTTAAGCGGGGC < 41bp 0.465901751759319 0.789501656919422 0.7617441 0.8831365 prediction 0.579003313838844 Functional Gain - RNF40 ENSG00000103549 UTR3 Human protein_coding chr16:30787158 chr16:30787162 . . 0 25 hm5C_associated_SNPs_102785 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921093 0.2427848 2.22044604925031e-16 hm5C_site_55930 DeepMRMD:0.2427848;iRNA_m5C:2.22044604925031e-16 55931 chr1 20417069 20417069 1 + C A HNSC 20417065 + 20417045 20417085 41 TGGTGTCCTTTTGCAGAGCCCGGGCCCTTCTGCCATGTGAA TGGTGTCCTTTTGCAGAGCCCGGGACCTTCTGCCATGTGAA < 41bp 0.418004492143544 0.789500090094383 0.8866316 0.90819037 prediction 0.579000180188766 Functional Gain - PLA2G5 ENSG00000127472 CDS Human protein_coding chr1:20417065 chr1:20417069 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_102786 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.0431175400000001 0 hm5C_site_55931 DeepMRMD:0.0431175400000001;iRNA_m5C:0 55932 chr12 50367219 50367219 1 + C A BLCA 50367215 + 50367195 50367235 41 ACGCCAACCCCGCCGTGACGCTGGCCTTCCTCGTAGGCTCC ACGCCAACCCCGCCGTGACGCTGGACTTCCTCGTAGGCTCC < 41bp 0.603715791019931 0.893214873574926 0.255302 0.5349298 prediction 0.57899816510999 Functional Gain - AQP6 ENSG00000086159 CDS Human protein_coding chr12:50367215 chr12:50367219 nonsynonymous SNV 0.979 5 25 hm5C_associated_SNPs_102787 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.0698596 0 hm5C_site_55932 DeepMRMD:0.0698596;iRNA_m5C:0 55933 chr10 75671296 75671296 1 + C A rs2227555 75671292 + 75671272 75671312 41 TTCCTTTGCAGAGCCGCCGTCTAGCGCCCCGACCTCGCCAC TTCCTTTGCAGAGCCGCCGTCTAGAGCCCCGACCTCGCCAC < 41bp 0.593666115452184 0.883160770730089 0.35806376 0.4261498 prediction 0.57898931055581 Functional Gain - PLAU;C10orf55 ENSG00000122861;ENSG00000222047 UTR5;UTR3 Human other chr10:75671292 chr10:75671296 . . 0 25 hm5C_associated_SNPs_102788 1 0 0 0 1 unknown 0.500231637352279 0.500231643921092 0 1.31376263201588e-08 hm5C_site_55933 DeepMRMD:0;iRNA_m5C:1.31376263201588e-08 Quebec platelet disorder Quebec platelet disorder 55934 chr5 5306772 5306772 1 + C A LUAD 5306768 + 5306748 5306788 41 ACGTGCCTGCGCCCCGCTTCCATGCCCCAGGCACCCCCCAT ACGTGCCTGCGCCCCGCTTCCATGACCCAGGCACCCCCCAT < 41bp 0.403131496085661 0.789489280329535 0.17990613 0.10850108 prediction 0.578978560659069 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5306768 chr5:5306772 stopgain 0.258 1 25 hm5C_associated_SNPs_102789 0 0 0 0 1 exosome 0.500231644057647 0.500231643921632 0 0 hm5C_site_55934 DeepMRMD:0;iRNA_m5C:0 55935 chr7 53104463 53104463 1 + C A rs539000133 53104459 + 53104439 53104479 41 GATTTCAGAACCCTTGCCTTCGCCCTGCTGGCCCTCTCCTC GATTTCAGAACCCTTGCCTTCGCCATGCTGGCCCTCTCCTC < 41bp 0.558971387784597 0.848456304389824 0.5161442 0.92652 prediction 0.578969833210454 Functional Gain - POM121L12 ENSG00000221900 UTR3 Human protein_coding chr7:53104459 chr7:53104463 . . 0 25 hm5C_associated_SNPs_102790 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.8207516 0 hm5C_site_55935 DeepMRMD:0.8207516;iRNA_m5C:0 55936 chr6 130762329 130762329 1 + C A UCEC 130762325 + 130762305 130762345 41 GCTCTCTGACAGCTCTGTGTCTGTCTTTGGCCTCTATCCAC GCTCTCTGACAGCTCTGTGTCTGTATTTGGCCTCTATCCAC < 41bp 0.385340412305717 0.789481242617186 0.10314697 0.061127543 prediction 0.578962485234372 Functional Gain - TMEM200A ENSG00000164484 CDS Human protein_coding chr6:130762325 chr6:130762329 synonymous SNV . 0 25 hm5C_associated_SNPs_102791 0 0 0 0 0 exosome 0.500231643962432 0.50023164414043 0 3.5599678760434e-10 hm5C_site_55936 DeepMRMD:0;iRNA_m5C:3.5599678760434e-10 55937 chr1 228400271 228400271 1 + G C SKCM 228400272 - 228400252 228400292 41 CCGTCTCGGGCTTGGGCTCGCCGGTCACGTAGCAGCTGAGG CCGTCTCGGGCTTGGGCTCGCGGGTCACGTAGCAGCTGAGG < 41bp 0.506377233260189 0.79585198005506 0.69223684 0.9363853 prediction 0.57894949358974 Functional Gain - OBSCN ENSG00000154358 CDS Human protein_coding chr1:228400272 chr1:228400271 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_102792 0 0 1 0 1 Ribosome 0.500231645441152 0.500231643921258 0.48829692 0 hm5C_site_55937 DeepMRMD:0.48829692;iRNA_m5C:0 55938 chr1 47902604 47902604 1 + C A rs549459855 47902600 + 47902580 47902620 41 GGCAGGGGGCGGAGGAGGTCCTGCCGCCTGTCGGTGGGGCC GGCAGGGGGCGGAGGAGGTCCTGCAGCCTGTCGGTGGGGCC < 41bp 0.469962659956502 0.789460850662957 0.7245206 0.6821474 prediction 0.578921701325913 Functional Gain - LINC01389 ENSG00000186564 UTR5 Human protein_coding chr1:47902600 chr1:47902604 . . 0 25 hm5C_associated_SNPs_102793 0 0 0 0 0 unknown 0.500231503042709 0.500231648962195 0 2.91838972543701e-07 hm5C_site_55938 DeepMRMD:0;iRNA_m5C:2.91838972543701e-07 55939 chr10 115804544 115804544 1 + T G UCEC 115804542 + 115804522 115804562 41 AACGACCCCAAGTGCTGCGACTTCGTCACCAACCGGGCCTA AACGACCCCAAGTGCTGCGACTGCGTCACCAACCGGGCCTA < 41bp 0.458612758913505 0.789450014714223 0.03743288 0.1297561 prediction 0.578900029428447 Functional Gain - ADRB1 ENSG00000043591 CDS Human protein_coding chr10:115804542 chr10:115804544 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_102794 0 0 0 0 0 Nucleus 0.500231801158942 0.500231709257477 0 0 hm5C_site_55939 DeepMRMD:0;iRNA_m5C:0 55940 chr1 152681593 152681593 1 + C A LUAD 152681589 + 152681569 152681609 41 CCAACAGCAGTGCCAGCCCCCTCCCAAGTGTCCTATCCCCA CCAACAGCAGTGCCAGCCCCCTCCAAAGTGTCCTATCCCCA < 41bp 0.403913949140804 0.789415858034943 0.045208067 0.9521949 prediction 0.578831716069885 Functional Gain - LCE4A ENSG00000187170 CDS Human protein_coding chr1:152681589 chr1:152681593 synonymous SNV . 0 25 hm5C_associated_SNPs_102795 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.9043898 0 hm5C_site_55940 DeepMRMD:0.9043898;iRNA_m5C:0 55941 chr20 1902243 1902243 1 + C A LUSC 1902239 + 1902219 1902259 41 GTCCTACAGCATCCACAGCACAGCCAAGGTGGTGCTGACCC GTCCTACAGCATCCACAGCACAGCAAAGGTGGTGCTGACCC < 41bp 0.372294643393446 0.78940536817496 0.08335197 0.11375207 prediction 0.578810736349919 Functional Gain - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1902239 chr20:1902243 synonymous SNV . 0 25 hm5C_associated_SNPs_102796 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643684037 0 0 hm5C_site_55941 DeepMRMD:0;iRNA_m5C:0 55942 chr20 37380883 37380883 1 + C G OV 37380882 + 37380862 37380902 41 GGGCACCTGGCAGCCATCACCCTCAGCCGCATGGAGGAGAT GGGCACCTGGCAGCCATCACCGTCAGCCGCATGGAGGAGAT < 41bp 0.513647196854783 0.8030367099705 0.05497679 0.28887162 prediction 0.578779026231435 Functional Gain - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37380882 chr20:37380883 nonsynonymous SNV 0.980 5 22 hm5C_associated_SNPs_102797 0 0 0 0 1 chromatin 0.500231627687547 0.500231575468374 0 0 hm5C_site_55942 DeepMRMD:0;iRNA_m5C:0 55943 chr11 44077843 44077843 1 + C A LUAD 44077839 + 44077819 44077859 41 CTCCACAGTATTTCTGGCATCACCCAGCACAAGCTGTGTCA CTCCACAGTATTTCTGGCATCACCAAGCACAAGCTGTGTCA < 41bp 0.366585600043265 0.789381195396131 0.18285978 0.4320779 prediction 0.578762390792261 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44077839 chr11:44077843 nonsynonymous SNV 0.140 4 25 hm5C_associated_SNPs_102798 0 0 0 0 1 Exosome 0.500231644100713 0.500231643212396 0 0 hm5C_site_55943 DeepMRMD:0;iRNA_m5C:0 55944 chr12 56031284 56031284 1 + C A HNSC 56031280 + 56031260 56031300 41 GAGCGAGATCTCCGTGATGACAGCCACCATAGTCTTCATTA GAGCGAGATCTCCGTGATGACAGCAACCATAGTCTTCATTA < 41bp 0.59748344988193 0.886852095235042 0.08730662 0.09093773 prediction 0.578737290706224 Functional Gain - OR10P1 ENSG00000175398 CDS Human protein_coding chr12:56031280 chr12:56031284 synonymous SNV . 0 25 hm5C_associated_SNPs_102799 0 0 0 0 0 exosome 0.50023161474679 0.500074232524863 0 0 hm5C_site_55944 DeepMRMD:0;iRNA_m5C:0 55945 chr15 40683717 40683717 1 + T G STAD 40683715 + 40683695 40683735 41 TTTAGGCAGTGAGACCCTGGCATCACGACAAGAATCCACTA TTTAGGCAGTGAGACCCTGGCAGCACGACAAGAATCCACTA < 41bp 0.553266661578606 0.842633640461008 0.07342717 0.3616103 prediction 0.578733957764805 Functional Gain - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40683715 chr15:40683717 nonsynonymous SNV 0.091 0 23 hm5C_associated_SNPs_102800 0 0 1 0 2 Ribosome 0.500231643931011 0.500231647864461 0 7.86689935416973e-09 hm5C_site_55945 DeepMRMD:0;iRNA_m5C:7.86689935416973e-09 55946 chr14 23240666 23240666 1 + C G LIHC 23240665 + 23240645 23240685 41 CCTTTACGACAGACCTTTACCCACAACCCTCTCCTACAACC CCTTTACGACAGACCTTTACCGACAACCCTCTCCTACAACC < 41bp 0.493994805410527 0.789364535294423 0.070084274 0.22244725 prediction 0.578729070588845 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240665 chr14:23240666 nonsynonymous SNV 0.967 4 22 hm5C_associated_SNPs_102801 0 0 1 1 1 Cytosol 0.50023164385782 0.50023164389139 0 6.71411815034162e-11 hm5C_site_55946 DeepMRMD:0;iRNA_m5C:6.71411815034162e-11 55947 chr11 64010748 64010748 1 + C A rs111312054 64010744 + 64010724 64010764 41 CTTTGTCTTCTCCCTTGGCACAGGCCAGGTCATCAAGGGCT CTTTGTCTTCTCCCTTGGCACAGGACAGGTCATCAAGGGCT < 41bp 0.610369824362927 0.89972227396451 0.6470811 0.7502314 prediction 0.578704899203165 Functional Gain - FKBP2 ENSG00000173486 CDS Human protein_coding chr11:64010744 chr11:64010748 synonymous SNV . 0 25 hm5C_associated_SNPs_102802 0 0 1 0 2 Endoplasmic reticulum 0.500231643921059 0.500231643921092 0.2063006 6.68354260824344e-14 hm5C_site_55947 DeepMRMD:0.2063006;iRNA_m5C:6.68354260824344e-14 55948 chr5 156747723 156747723 1 + T A LUSC 156747719 + 156747699 156747739 41 GGAGGGAGGGCGAGAGCCCCCTAATGACCCATGCTTGAGAG GGAGGGAGGGCGAGAGCCCCCTAAAGACCCATGCTTGAGAG < 41bp 0.533784141505165 0.823126320541633 0.030163825 0.08712092 prediction 0.578684358072936 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156747719 chr5:156747723 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102803 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921091 0 0 hm5C_site_55948 DeepMRMD:0;iRNA_m5C:0 55949 chr2 242148927 242148927 1 + C G rs545281192 242148926 + 242148906 242148946 41 CTTCCAGGAGAGGCCTCGGCCCCAGTTTGCCGCCTCAGCCC CTTCCAGGAGAGGCCTCGGCCGCAGTTTGCCGCCTCAGCCC < 41bp 0.526282828673977 0.815622044280456 0.1067777 0.3527454 prediction 0.578678431212958 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242148926 chr2:242148927 synonymous SNV . 0 22 hm5C_associated_SNPs_102804 0 0 0 0 1 chromatin 0.500231643921042 0.500231643921092 0 1.01030295240889e-13 hm5C_site_55949 DeepMRMD:0;iRNA_m5C:1.01030295240889e-13 55950 chr5 175601561 175601561 1 + T G rs368810780 175601559 + 175601539 175601579 41 GGATCCTGGCCTTTCCCCTTCTTGATGCCAGGACCTACTGA GGATCCTGGCCTTTCCCCTTCTGGATGCCAGGACCTACTGA < 41bp 0.493009520996427 0.789325571755117 0.27579015 0.28979674 prediction 0.578651143510234 Functional Gain - LOC643201 ENSG00000248596 ncRNA_intronic Human processed_transcript chr5:175601559 chr5:175601561 . . 0 23 hm5C_associated_SNPs_102805 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_55950 DeepMRMD:0;iRNA_m5C:0 55951 chr15 29346197 29346197 1 + C A COAD 29346193 + 29346173 29346213 41 CCGAGAGCGAGGACATGGAGCTGCCCTTGGAGGGCTATGTG CCGAGAGCGAGGACATGGAGCTGCACTTGGAGGGCTATGTG < 41bp 0.388890824610223 0.789325016888808 0.27325296 0.33631122 prediction 0.578650033777616 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29346193 chr15:29346197 nonsynonymous SNV 0.037 1 25 hm5C_associated_SNPs_102806 0 0 1 0 0 Cytosol 0.500046365904694 0.500231642166278 0 0.000370552523168532 hm5C_site_55951 DeepMRMD:0;iRNA_m5C:0.000370552523168532 55952 chr6 13977368 13977368 1 + T G LUSC 13977366 + 13977346 13977386 41 TCAAGATGGCCAGTCAACCTCCTGAAGACACTGCGGAGTCT TCAAGATGGCCAGTCAACCTCCGGAAGACACTGCGGAGTCT < 41bp 0.548476390023102 0.837783247186525 0.103964806 0.5052719 prediction 0.578613714326845 Functional Gain - RNF182 ENSG00000180537 CDS Human protein_coding chr6:13977366 chr6:13977368 synonymous SNV . 0 23 hm5C_associated_SNPs_102807 0 0 1 0 0 chromatin 0.500268487542001 0.500236324063527 0.0105438 0 hm5C_site_55952 DeepMRMD:0.0105438;iRNA_m5C:0 55953 chr6 49494385 49494385 1 + T A rs554638781 49494381 + 49494361 49494401 41 GTCTCCTGGTCCATCACAGACCAGTTTGCCACCATGTGCCA GTCTCCTGGTCCATCACAGACCAGATTGCCACCATGTGCCA < 41bp 0.53518467187074 0.82446647309791 0.036855787 0.066283435 prediction 0.578563602454341 Functional Gain - GLYATL3 ENSG00000203972 CDS Human protein_coding chr6:49494381 chr6:49494385 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_102808 0 0 0 0 0 exosome 0.500235496233389 0.500231911687599 0 0 hm5C_site_55953 DeepMRMD:0;iRNA_m5C:0 55954 chr22 25011033 25011033 1 + C A rs191569900 25011029 + 25011009 25011049 41 AAAAGCTGAGGTCATCAACGCCCGCGAGGTGGCCCCCAGGC AAAAGCTGAGGTCATCAACGCCCGAGAGGTGGCCCCCAGGC < 41bp 0.392436182939071 0.78928094532355 0.22762138 0.14898634 prediction 0.5785618906471 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25011029 chr22:25011033 synonymous SNV . 0 25 hm5C_associated_SNPs_102809 0 0 1 0 1 exosome 0.50023164389753 0.500231643921092 0 4.71249705924492e-11 hm5C_site_55954 DeepMRMD:0;iRNA_m5C:4.71249705924492e-11 55955 chr1 32829237 32829237 1 + C G rs184256666 32829236 + 32829216 32829256 41 CCTCGGGAGCTCCAAATCGTCCGTACCCTGGACCACAAGAA CCTCGGGAGCTCCAAATCGTCGGTACCCTGGACCACAAGAA < 41bp 0.497578020818744 0.789277032467004 0.01619634 0.06313294 prediction 0.578554064934008 Functional Gain - TSSK3 ENSG00000162526 CDS Human protein_coding chr1:32829236 chr1:32829237 nonsynonymous SNV 0.988 0 22 hm5C_associated_SNPs_102810 0 0 0 0 0 chromatin 0.500231643917043 0.500231643920862 0 7.63611396337183e-12 hm5C_site_55955 DeepMRMD:0;iRNA_m5C:7.63611396337183e-12 55956 chr7 30655554 30655554 1 + T G OV 30655551 + 30655531 30655571 41 ATTGAGCACTTTGTAGATCCCAGTGAGAAAGACCACCCCAA ATTGAGCACTTTGTAGATCCCAGGGAGAAAGACCACCCCAA < 41bp 0.607565968684884 0.896832796994637 0.42688403 0.8941593 prediction 0.578533656619506 Functional Gain - GARS ENSG00000106105 CDS Human protein_coding chr7:30655551 chr7:30655554 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_102811 0 0 1 0 1 Cytosol 0.500231643921075 0.500231643921092 0.7883186 3.35287353436797e-14 hm5C_site_55956 DeepMRMD:0.7883186;iRNA_m5C:3.35287353436797e-14 55957 chr17 61908926 61908926 1 + C A SKCM 61908922 + 61908902 61908942 41 ATGAACCTGACCCGGGGGATCAACCTGAGAAAAATTGCTGA ATGAACCTGACCCGGGGGATCAACATGAGAAAAATTGCTGA < 41bp 0.379733451934603 0.789236788416166 0.7917469 0.7900137 prediction 0.578473576832333 Functional Gain - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908922 chr17:61908926 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_102812 0 0 1 0 2 Ribosome 0.500231645720919 0.500231643921092 0 0 hm5C_site_55957 DeepMRMD:0;iRNA_m5C:0 55958 chr11 113264333 113264333 1 + C A UCEC 113264329 + 113264309 113264349 41 ATGGAGTTTATGGCCAACGGCTCCCTGGAGAAGGTGCTGTC ATGGAGTTTATGGCCAACGGCTCCATGGAGAAGGTGCTGTC < 41bp 0.353912485187173 0.789230522889264 0.05139208 0.91908634 prediction 0.578461045778528 Functional Gain - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113264329 chr11:113264333 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_102813 0 0 0 0 0 exosome 0.500231643921028 0.500231643953013 0.83817268 6.3969496366667e-11 hm5C_site_55958 DeepMRMD:0.83817268;iRNA_m5C:6.3969496366667e-11 55959 chrX 30260301 30260301 1 + C A LUAD 30260297 + 30260277 30260317 41 CTCCGTGCCCGTGAGAAACGCCAGCGGACCCGTGGTCAGAC CTCCGTGCCCGTGAGAAACGCCAGAGGACCCGTGGTCAGAC < 41bp 0.587530839408874 0.876741671408217 0.842827 0.9212392 prediction 0.578421663998687 Functional Gain - MAGEB4 ENSG00000120289 CDS Human protein_coding chrX:30260297 chrX:30260301 synonymous SNV . 0 25 hm5C_associated_SNPs_102814 0 0 0 0 0 Nucleus 0.500231643921086 0.500231643921015 0.1568244 0 hm5C_site_55959 DeepMRMD:0.1568244;iRNA_m5C:0 55960 chr1 175049505 175049505 1 + C A LUSC 175049501 + 175049481 175049521 41 CCTGGAACCAAGTACATAGTCACCCTGCGTAACGTCAAGAA CCTGGAACCAAGTACATAGTCACCATGCGTAACGTCAAGAA < 41bp 0.356641241804587 0.789208576203775 0.14520079 0.121632576 prediction 0.578417152407551 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175049501 chr1:175049505 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_102815 0 0 0 0 1 exosome 0.500231643920256 0.500294912527165 0 0.000126537213818612 hm5C_site_55960 DeepMRMD:0;iRNA_m5C:0.000126537213818612 55961 chr3 150127731 150127731 1 + C G rs34667041 150127730 + 150127710 150127750 41 CAGCAGCGTCCTGACTAGATCCGGGGATTGCATTAGACACA CAGCAGCGTCCTGACTAGATCGGGGGATTGCATTAGACACA < 41bp 0.493850600723433 0.789182663205464 0.89839244 0.92979395 prediction 0.578365326410929 Functional Gain - TSC22D2 ENSG00000196428 CDS Human protein_coding chr3:150127730 chr3:150127731 synonymous SNV . 0 22 hm5C_associated_SNPs_102816 0 0 1 0 0 Ribosome 0.50023164395035 0.500231653049308 0.06280302 1.81979145086331e-08 hm5C_site_55961 DeepMRMD:0.06280302;iRNA_m5C:1.81979145086331e-08 55962 chr14 19377748 19377748 1 + T G CESC 19377745 + 19377725 19377765 41 ACTCTTTACTACAACATATGCACTGACTATAACAGGGAATG ACTCTTTACTACAACATATGCACGGACTATAACAGGGAATG < 41bp 0.416444363821221 0.78917990322206 0.032543123 0.09258428 prediction 0.57835980644412 Functional Gain - OR11H12 ENSG00000257115 CDS Human protein_coding chr14:19377745 chr14:19377748 nonsynonymous SNV 0.087 2 24 hm5C_associated_SNPs_102817 0 0 0 0 0 unknown 0.500231643842423 0.500231643921136 0 1.57424295821329e-10 hm5C_site_55962 DeepMRMD:0;iRNA_m5C:1.57424295821329e-10 55963 chrX 78011436 78011436 1 + C A LUAD 78011432 + 78011412 78011452 41 TTCAAGAGGAAGTGAGTGATCAAACAACAAATAATGGTGGT TTCAAGAGGAAGTGAGTGATCAAAAAACAAATAATGGTGGT < 41bp 0.410068254418685 0.789170803950405 0.67606014 0.8688265 prediction 0.578341607900809 Functional Gain - LPAR4 ENSG00000147145 CDS Human protein_coding chrX:78011432 chrX:78011436 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_102818 0 0 0 0 0 exosome 0.50024089039687 0.500238161163879 0.38553272 0 hm5C_site_55963 DeepMRMD:0.38553272;iRNA_m5C:0 55964 chr9 132632038 132632038 1 + C G LUSC 132632037 + 132632017 132632057 41 AAGCTCCATTCAGCCATCTACCAGAATGTGCCGGCCAAGCC AAGCTCCATTCAGCCATCTACGAGAATGTGCCGGCCAAGCC < 41bp 0.543581564734036 0.832750301049747 0.30985332 0.55868757 prediction 0.578337472631424 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132632037 chr9:132632038 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_102819 0 0 0 0 2 chromatin 0.500228492153463 0.500194482537128 0.11737514 0 hm5C_site_55964 DeepMRMD:0.11737514;iRNA_m5C:0 55965 chr2 238006812 238006812 1 + T G rs535023743 238006809 + 238006789 238006829 41 CCCAGGCACAGTATCTGAATCACTGGGGATTATGATTCACC CCCAGGCACAGTATCTGAATCACGGGGGATTATGATTCACC < 41bp 0.588859804074368 0.878019769606288 0.09086943 0.3835161 prediction 0.57831993106384 Functional Gain - COPS8 ENSG00000198612 UTR3 Human protein_coding chr2:238006809 chr2:238006812 . . 0 24 hm5C_associated_SNPs_102820 0 0 1 2 0 Ribosome 0.500231643921092 0.500231643950938 0 5.96904747851568e-11 hm5C_site_55965 DeepMRMD:0;iRNA_m5C:5.96904747851568e-11 55966 chr2 128389852 128389852 1 + T G LUAD 128389849 + 128389829 128389869 41 AAGAGCGGGGCTGGCAGCTGCTGTGGCTGTGCACGGGCCTC AAGAGCGGGGCTGGCAGCTGCTGGGGCTGTGCACGGGCCTC < 41bp 0.412600584787388 0.789128490447365 0.5365097 0.9013829 prediction 0.57825698089473 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128389849 chr2:128389852 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_102821 0 0 0 0 1 exosome 0.500231643894695 0.500231643921094 0.7297464 5.27979882036789e-11 hm5C_site_55966 DeepMRMD:0.7297464;iRNA_m5C:5.27979882036789e-11 55967 chr17 4930813 4930813 1 + C A rs147330206 4930809 + 4930789 4930829 41 GCTCAAGCAATCCTGCCTCCCAAGCCAAGCAGCTGGTACTG GCTCAAGCAATCCTGCCTCCCAAGACAAGCAGCTGGTACTG < 41bp 0.544472507384145 0.833572784915336 0.30206192 0.39810887 prediction 0.578200555062381 Functional Gain - KIF1C ENSG00000129250 UTR3 Human protein_coding chr17:4930809 chr17:4930813 . . 0 25 hm5C_associated_SNPs_102822 0 0 1 0 0 Ribosome 0.500231643368934 0.500231457644274 0 0 hm5C_site_55967 DeepMRMD:0;iRNA_m5C:0 55968 chr1 247654618 247654618 1 + T G HNSC 247654616 + 247654596 247654636 41 ACACACCCATGTACTTCTTTCTTGGGAATCTGTCTTTCTTA ACACACCCATGTACTTCTTTCTGGGGAATCTGTCTTTCTTA < 41bp 0.505639219222154 0.794735882924101 0.08930516 0.62143815 prediction 0.578193327403894 Functional Gain - OR2W5 ENSG00000203664 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:247654616 chr1:247654618 . . 0 23 hm5C_associated_SNPs_102823 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.2428763 0 hm5C_site_55968 DeepMRMD:0.2428763;iRNA_m5C:0 55969 chr11 375882 375882 1 + C A UCEC 375878 + 375858 375898 41 GAATCTTCGAGCCTGGAGAACGTGCTGGAGCCCTGCGCCTA GAATCTTCGAGCCTGGAGAACGTGATGGAGCCCTGCGCCTA < 41bp 0.401926704256116 0.78909058886814 0.45398438 0.5332969 prediction 0.578181177736281 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:375878 chr11:375882 nonsynonymous SNV 0.934 2 25 hm5C_associated_SNPs_102824 0 0 1 0 2 chromatin 0.500231643922136 0.500231643921092 0.0665937999999999 0 hm5C_site_55969 DeepMRMD:0.0665937999999999;iRNA_m5C:0 55970 chr1 44596265 44596265 1 + T A STAD 44596261 + 44596241 44596281 41 ATGAGCTTAGACGACATATGCGGGTACACACCAGATATCGA ATGAGCTTAGACGACATATGCGGGAACACACCAGATATCGA < 41bp 0.528099684406811 0.817188260553425 0.88825834 0.9023522 prediction 0.578177152293226 Functional Gain - KLF17 ENSG00000171872 CDS Human protein_coding chr1:44596261 chr1:44596265 nonsynonymous SNV 0.633 1 25 hm5C_associated_SNPs_102825 0 0 0 0 1 exosome 0.500230379165424 0.500231617191515 0.02818772 2.47605218195446e-06 hm5C_site_55970 DeepMRMD:0.02818772;iRNA_m5C:2.47605218195446e-06 55971 chr7 76112246 76112246 1 + C G rs151329883 76112245 + 76112225 76112265 41 ATACCCCGTCCCCCAGCACCCCCCACACAGGACCGCTTCTG ATACCCCGTCCCCCAGCACCCGCCACACAGGACCGCTTCTG < 41bp 0.508352371754563 0.797437991770638 0.011272699 0.11092457 prediction 0.578171240032149 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76112245 chr7:76112246 synonymous SNV . 0 22 hm5C_associated_SNPs_102826 0 0 1 0 0 Nucleus 0.500231643919087 0.500231414453653 0 0 hm5C_site_55971 DeepMRMD:0;iRNA_m5C:0 55972 chr8 67341481 67341481 1 + C A rs116590536 67341477 + 67341457 67341497 41 GAGCTGCAGTTTGACCTGGGCAACCTGCTGGCGTCGGACCG GAGCTGCAGTTTGACCTGGGCAACATGCTGGCGTCGGACCG < 41bp 0.420679424786877 0.789085179087825 0.33440602 0.31619182 prediction 0.57817035817565 Functional Gain - RRS1 ENSG00000179041 CDS Human protein_coding chr8:67341477 chr8:67341481 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102827 0 0 1 0 0 exosome 0.500231643921094 0.500231643921092 0 0 hm5C_site_55972 DeepMRMD:0;iRNA_m5C:0 55973 chr20 35865030 35865030 1 + C G OV 35865029 + 35865009 35865049 41 TGGACTCAGCTCAACATGTTCCAGACCTTGAAGTACCTGGC TGGACTCAGCTCAACATGTTCGAGACCTTGAAGTACCTGGC < 41bp 0.49112223390148 0.789076680636968 0.057281137 0.15813276 prediction 0.578153361273937 Functional Gain - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35865029 chr20:35865030 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_102828 0 0 1 0 2 Ribosome 0.500231632826556 0.500231642964126 0 2.02751402333945e-08 hm5C_site_55973 DeepMRMD:0;iRNA_m5C:2.02751402333945e-08 55974 chr6 44200586 44200586 1 + C G THYM 44200585 + 44200565 44200605 41 CTGCCAAGCCTGGTGCTGGCCCGGCTGGTGTTTGTGCCACT CTGCCAAGCCTGGTGCTGGCCGGGCTGGTGTTTGTGCCACT < 41bp 0.493730669460374 0.789058308024936 0.03978911 0.4590224 prediction 0.578116616049871 Functional Gain - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44200585 chr6:44200586 nonsynonymous SNV 0.101 5 22 hm5C_associated_SNPs_102829 0 0 1 0 1 Endoplasmic reticulum 0.500231653309075 0.500231632113423 0 0 hm5C_site_55974 DeepMRMD:0;iRNA_m5C:0 55975 chr14 21469131 21469131 1 + T G UCEC 21469129 + 21469109 21469149 41 GAGTATCCCTATGGAGAGCTCATCATCTCCCTGGGCTTCTT GAGTATCCCTATGGAGAGCTCAGCATCTCCCTGGGCTTCTT < 41bp 0.463327600133928 0.789041938904049 0.109041125 0.36697322 prediction 0.578083877808099 Functional Gain - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21469129 chr14:21469131 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_102830 0 0 0 0 1 exosome 0.500231648876288 0.500231643919897 0 0 hm5C_site_55975 DeepMRMD:0;iRNA_m5C:0 55976 chr5 140536988 140536988 1 + T G UCEC 140536986 + 140536966 140537006 41 AACAACAGCCCCGCCCTGCACATCGGCAGTGTCAGCGCCAC AACAACAGCCCCGCCCTGCACAGCGGCAGTGTCAGCGCCAC < 41bp 0.55637109274647 0.845409745431781 0.22989598 0.7952374 prediction 0.578077305370621 Functional Gain - PCDHB17P ENSG00000255622 CDS Human transcribed_unprocessed_pseudogene chr5:140536986 chr5:140536988 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_102831 0 0 0 0 0 unknown 0.500231643930291 0.500231643921115 0.5904748 0 hm5C_site_55976 DeepMRMD:0.5904748;iRNA_m5C:0 55977 chr18 61234062 61234062 1 + C G LUSC 61234061 + 61234041 61234081 41 TTGTACTTGTCAAAAATTATCCACAAAACCTTTGTGGAGGT TTGTACTTGTCAAAAATTATCGACAAAACCTTTGTGGAGGT < 41bp 0.499459129716605 0.789032605611734 0.010994345 0.056799054 prediction 0.578065211223467 Functional Gain - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61234061 chr18:61234062 nonsynonymous SNV 0.932 5 22 hm5C_associated_SNPs_102832 0 0 0 0 0 exosome 0.500222336622464 0.500231634594773 0 1.85959446192818e-05 hm5C_site_55977 DeepMRMD:0;iRNA_m5C:1.85959446192818e-05 55978 chr5 134236256 134236256 1 + T A rs373743795 134236252 + 134236232 134236272 41 GCGGGCACCTGTAATCCCAGCTACTTGGGAAAGCTGAGGCA GCGGGCACCTGTAATCCCAGCTACATGGGAAAGCTGAGGCA < 41bp 0.492211286465153 0.789029559844141 0.42625043 0.81609213 prediction 0.578059119688282 Functional Gain - TXNDC15 ENSG00000113621 UTR3 Human protein_coding chr5:134236252 chr5:134236256 . . 0 25 hm5C_associated_SNPs_102833 0 0 0 0 0 Ribosome 0.500231643921093 0.500231643921093 0.63218426 0 hm5C_site_55978 DeepMRMD:0.63218426;iRNA_m5C:0 55979 chr16 1877416 1877416 1 + C G rs143728918 1877415 + 1877395 1877435 41 GGGCTCGCCCATCCTCATGCCCGCGTACACTCGCAACCTGC GGGCTCGCCCATCCTCATGCCGGCGTACACTCGCAACCTGC < 41bp 0.523880734169911 0.812897105988112 0.12345672 0.43121347 prediction 0.578032743636403 Functional Gain - FAHD1 ENSG00000180185 CDS Human protein_coding chr16:1877415 chr16:1877416 synonymous SNV . 0 22 hm5C_associated_SNPs_102834 0 0 1 0 0 Ribosome 0.500231644104848 0.50023164392248 0 0 hm5C_site_55979 DeepMRMD:0;iRNA_m5C:0 55980 chr15 38988924 38988924 1 + C A rs11857596 38988920 + 38988900 38988940 41 GCAGGAGCAGCATCTGTCTCCAGGCGTCTGTTTGGATGGCT GCAGGAGCAGCATCTGTCTCCAGGAGTCTGTTTGGATGGCT < 41bp 0.590411796783663 0.879400889334004 0.9315736 0.9020035 prediction 0.577978185100682 Functional Gain - C15orf53 ENSG00000175779 CDS Human protein_coding chr15:38988920 chr15:38988924 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_102835 0 0 0 0 1 exosome 0.50023164392109 0.500231643921132 0 8.32667268468867e-14 hm5C_site_55980 DeepMRMD:0;iRNA_m5C:8.32667268468867e-14 55981 chr2 73471724 73471724 1 + C A PAAD 73471720 + 73471700 73471740 41 GCCATGACCGCTCTGAGCTCCAAGCTGATCTCCCAGCAGAA GCCATGACCGCTCTGAGCTCCAAGATGATCTCCCAGCAGAA < 41bp 0.393148970982377 0.788970975102537 0.38914588 0.31136283 prediction 0.577941950205075 Functional Gain - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73471720 chr2:73471724 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_102836 0 0 1 0 1 Cytosol 0.500231641267144 0.500231643882544 0 5.23080045944369e-09 hm5C_site_55981 DeepMRMD:0;iRNA_m5C:5.23080045944369e-09 55982 chr11 124440912 124440912 1 + C A LUAD 124440908 + 124440888 124440928 41 GAGGAACAAGGAAGTAAAGGCTGCCGTGCAGAAAACGCTGA GAGGAACAAGGAAGTAAAGGCTGCAGTGCAGAAAACGCTGA < 41bp 0.60070260075385 0.889638473665539 0.12284997 0.13280892 prediction 0.577871745823378 Functional Gain - OR8A1 ENSG00000196119 CDS Human protein_coding chr11:124440908 chr11:124440912 synonymous SNV . 0 25 hm5C_associated_SNPs_102837 0 0 0 0 0 exosome 0.500231643921092 0.500231643921094 0 3.77475828372553e-15 hm5C_site_55982 DeepMRMD:0;iRNA_m5C:3.77475828372553e-15 55983 chr13 22245385 22245385 1 + C A rs547446043 22245381 + 22245361 22245401 41 CGTTCTAAGCCAATGGACATCTGCCGAGCCTCTGGAGAATC CGTTCTAAGCCAATGGACATCTGCAGAGCCTCTGGAGAATC < 41bp 0.424210792330799 0.788931473964027 0.08109763 0.26049823 prediction 0.577862947928054 Functional Gain - FGF9 ENSG00000102678 upstream Human protein_coding chr13:22245381 chr13:22245385 . . 0 25 hm5C_associated_SNPs_102838 0 0 1 0 0 exosome 0.500231643921818 0.500231643990758 0 1.37881261963457e-10 hm5C_site_55983 DeepMRMD:0;iRNA_m5C:1.37881261963457e-10 55984 chr19 53015298 53015298 1 + C A LUAD 53015294 + 53015274 53015314 41 CTTTCATGTGCCATTCTTATCTGGCAAACCATACTAGAATT CTTTCATGTGCCATTCTTATCTGGAAAACCATACTAGAATT < 41bp 0.412848273955353 0.788928847067665 0.037206143 0.034920454 prediction 0.57785769413533 Functional Gain - ZNF578 ENSG00000258405 CDS Human protein_coding chr19:53015294 chr19:53015298 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102839 0 0 0 0 0 Cytosol 0.500231644726 0.500231645167178 0 8.82355744025176e-10 hm5C_site_55984 DeepMRMD:0;iRNA_m5C:8.82355744025176e-10 55985 chr6 142623153 142623153 1 + T G rs73576330 142623151 + 142623131 142623171 41 ACCCCTGCCTGGCCCGGTCTCCTCAGCACCAGCCCCACGCA ACCCCTGCCTGGCCCGGTCTCCGCAGCACCAGCCCCACGCA < 41bp 0.561696634251273 0.850625083305997 0.3412916 0.9090556 prediction 0.577856898109448 Functional Gain - ADGRG6 ENSG00000112414 UTR5 Human protein_coding chr6:142623151 chr6:142623153 . . 0 23 hm5C_associated_SNPs_102840 0 0 0 0 0 Ribosome 0.500231624704859 0.500199505963328 0.8181112 0 hm5C_site_55985 DeepMRMD:0.8181112;iRNA_m5C:0 55986 chr10 69881917 69881917 1 + C A LUAD 69881913 + 69881893 69881933 41 CCAAGAGGCGTGAAGCGGAGCAGGCTGCCAGTGAGGCGGCT CCAAGAGGCGTGAAGCGGAGCAGGATGCCAGTGAGGCGGCT < 41bp 0.518012011143538 0.806915689599776 0.8975377 0.8932562 prediction 0.577807356912475 Functional Gain - MYPN ENSG00000138347 CDS Human protein_coding chr10:69881913 chr10:69881917 nonsynonymous SNV 0.967 0 25 hm5C_associated_SNPs_102841 0 0 0 0 0 Cytosol 0.500231643917759 0.500231643921092 0 6.66666721826914e-12 hm5C_site_55986 DeepMRMD:0;iRNA_m5C:6.66666721826914e-12 55987 chr2 241974002 241974002 1 + C A rs6736167 241973998 + 241973978 241974018 41 CCCCCAGGCTGGCTTCAACGCAGGCGATGGGCAGCGTTACT CCCCCAGGCTGGCTTCAACGCAGGAGATGGGCAGCGTTACT < 41bp 0.403875318619915 0.788900056647062 0.3328567 0.58395636 prediction 0.577800113294124 Functional Gain - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241973998 chr2:241974002 synonymous SNV . 0 25 hm5C_associated_SNPs_102842 0 0 0 0 1 nucleus 0.500231643921002 0.500231643921088 0.16791272 1.72972747236599e-13 hm5C_site_55987 DeepMRMD:0.16791272;iRNA_m5C:1.72972747236599e-13 55988 chr21 31768495 31768495 1 + C A STAD 31768491 + 31768471 31768511 41 GCCTCCTCCTGTGGCTTTTCCTACCCCAGCAACCAGGTCTA GCCTCCTCCTGTGGCTTTTCCTACACCAGCAACCAGGTCTA < 41bp 0.601579872548987 0.890459023198176 0.17871758 0.3771137 prediction 0.577758301298376 Functional Gain - KRTAP13-1 ENSG00000198390 CDS Human protein_coding chr21:31768491 chr21:31768495 nonsynonymous SNV 0.581 3 25 hm5C_associated_SNPs_102843 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_55988 DeepMRMD:0;iRNA_m5C:0 55989 chr20 44746996 44746996 1 + C A UCEC 44746992 + 44746972 44747012 41 CTCACCTCGCTATGGTTCGTCTGCCTCTGCAGTGCGTCCTC CTCACCTCGCTATGGTTCGTCTGCATCTGCAGTGCGTCCTC < 41bp 0.402733372172027 0.788863077891886 0.2794179 0.31014657 prediction 0.577726155783772 Functional Gain - CD40 ENSG00000101017 CDS Human protein_coding chr20:44746992 chr20:44746996 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_102844 0 0 1 0 1 Endoplasmic reticulum 0.500231643921169 0.500231643809562 0 0 hm5C_site_55989 DeepMRMD:0;iRNA_m5C:0 55990 chr5 153429380 153429380 1 + T G SKCM 153429377 + 153429357 153429397 41 GGACTTCGACCAAATGGTTTCACTGGAAGCAAATCGTAGTT GGACTTCGACCAAATGGTTTCACGGGAAGCAAATCGTAGTT < 41bp 0.42447391445244 0.788859733601977 0.14608884 0.23462978 prediction 0.577719467203955 Functional Gain - MFAP3 ENSG00000037749 CDS Human protein_coding chr5:153429377 chr5:153429380 nonsynonymous SNV 0.857 0 24 hm5C_associated_SNPs_102845 0 0 1 0 0 Endoplasmic reticulum 0.500231576570934 0.500231643917979 0 1.34694088771425e-07 hm5C_site_55990 DeepMRMD:0;iRNA_m5C:1.34694088771425e-07 55991 chr1 64104434 64104434 1 + C A rs200407907 64104430 + 64104410 64104450 41 TTTTGGGAATTTGATGGACGCGAGCAAACTGTCCCTTTGTG TTTTGGGAATTTGATGGACGCGAGAAAACTGTCCCTTTGTG < 41bp 0.383891617679871 0.788852634657671 0.6406379 0.8127621 prediction 0.577705269315341 Functional Gain - PGM1 ENSG00000079739 CDS Human protein_coding chr1:64104430 chr1:64104434 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_102846 3 0 1 0 1 Ribosome 0.500231643920935 0.50023164392109 0.3442484 3.09974268475344e-13 hm5C_site_55991 DeepMRMD:0.3442484;iRNA_m5C:3.09974268475344e-13 not specified not specified 55992 chr6 147830224 147830224 1 + C A rs140318247 147830220 + 147830200 147830240 41 GTGCTGGCGCCCGCGCACCGCCGCCGTATCCTGGAGGCCGT GTGCTGGCGCCCGCGCACCGCCGCAGTATCCTGGAGGCCGT < 41bp 0.596360480242596 0.885199043603983 0.33657342 0.31206036 prediction 0.577677126722774 Functional Gain - SAMD5 ENSG00000203727 CDS Human protein_coding chr6:147830220 chr6:147830224 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_102847 0 0 0 0 0 Ribosome 0.500231482807154 0.498335476390676 0 0 hm5C_site_55992 DeepMRMD:0;iRNA_m5C:0 55993 chr20 31877759 31877759 1 + T A UCEC 31877755 + 31877735 31877775 41 CCTCGGCCAATGACCAGGAGCTGCTAGTCAAGATCCCCCTG CCTCGGCCAATGACCAGGAGCTGCAAGTCAAGATCCCCCTG < 41bp 0.558530571070497 0.847363572540419 0.3211276 0.40652868 prediction 0.577666002939843 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31877755 chr20:31877759 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_102848 0 0 0 0 2 exosome 0.50023164392114 0.500231643925312 0 8.34421420847775e-12 hm5C_site_55993 DeepMRMD:0;iRNA_m5C:8.34421420847775e-12 55994 chr17 1619894 1619894 1 + C A ESCA 1619890 + 1619870 1619910 41 ATGCTGGTCCGTGTAGTTCTCAGCCTGACACCGTCGTTCCC ATGCTGGTCCGTGTAGTTCTCAGCATGACACCGTCGTTCCC < 41bp 0.413891408475481 0.788827660260131 0.63820875 0.64233905 prediction 0.577655320520262 Functional Gain - WDR81 ENSG00000167716 CDS Human protein_coding chr17:1619890 chr17:1619894 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102849 0 0 0 0 1 Endoplasmic reticulum 0.50023165924462 0.500232107650397 0.00826060000000006 8.96811554351729e-07 hm5C_site_55994 DeepMRMD:0.00826060000000006;iRNA_m5C:8.96811554351729e-07 55995 chr3 50388901 50388901 1 + C A COAD 50388897 + 50388877 50388917 41 GCGGAGACCGAGTCACACATCTACCGAGCTCTGCGTACTGC GCGGAGACCGAGTCACACATCTACAGAGCTCTGCGTACTGC < 41bp 0.619726534413932 0.908551466414581 0.23495862 0.7802248 prediction 0.577649864001298 Functional Gain - CYB561D2 ENSG00000114395;ENSG00000272104 CDS Human other chr3:50388897 chr3:50388901 synonymous SNV . 0 25 hm5C_associated_SNPs_102850 0 0 1 0 2 Ribosome 0.500231643921115 0.500232075125661 0.5604496 8.62409091917371e-07 hm5C_site_55995 DeepMRMD:0.5604496;iRNA_m5C:8.62409091917371e-07 55996 chr17 7536218 7536218 1 + C A KIRP 7536214 + 7536194 7536234 41 TTGCCCTGCCTCCCTTAGGCCTGGCTCCCCTCCTTAACCTC TTGCCCTGCCTCCCTTAGGCCTGGATCCCCTCCTTAACCTC < 41bp 0.566964916830328 0.855784167216672 0.1838226 0.38056123 prediction 0.577638500772688 Functional Gain - SHBG ENSG00000129214 CDS Human protein_coding chr17:7536214 chr17:7536218 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102851 0 0 0 0 1 cytosol 0.500231643921093 0.500231643921092 0 0 hm5C_site_55996 DeepMRMD:0;iRNA_m5C:0 55997 chr1 15809837 15809837 1 + C A LUSC 15809833 + 15809813 15809853 41 CCAGCTGGCCTGCCTCCCTCCTGCCGGCACCATTCTACCCA CCAGCTGGCCTGCCTCCCTCCTGCAGGCACCATTCTACCCA < 41bp 0.624474960285806 0.913291296949452 0.027944326 0.07116929 prediction 0.577632673327292 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15809833 chr1:15809837 synonymous SNV . 0 25 hm5C_associated_SNPs_102852 0 0 0 0 1 unknown 0.500231643921092 0.500231643921046 0 0 hm5C_site_55997 DeepMRMD:0;iRNA_m5C:0 55998 chr4 109088792 109088792 1 + G C SKCM 109088793 - 109088773 109088813 41 CTTCGCCGAGATCAGTCATCCCGAAGAGGAAGGCGATTTAG CTTCGCCGAGATCAGTCATCCGGAAGAGGAAGGCGATTTAG < 41bp 0.508765071828688 0.797567803849802 0.15497139 0.84324133 prediction 0.577605464042227 Functional Gain - LEF1 ENSG00000138795 CDS Human protein_coding chr4:109088793 chr4:109088792 synonymous SNV . 0 22 hm5C_associated_SNPs_102853 0 0 0 0 1 Cytosol 0.500231643914891 0.500231643991137 0.68648266 1.52491352878315e-10 hm5C_site_55998 DeepMRMD:0.68648266;iRNA_m5C:1.52491352878315e-10 55999 chr19 5455685 5455685 1 + C A BLCA 5455681 + 5455661 5455701 41 CCTGCCGCCTCCAGTGGGACCTAGCAGCACACAGACAGCGA CCTGCCGCCTCCAGTGGGACCTAGAAGCACACAGACAGCGA < 41bp 0.59521656935354 0.884012279920769 0.050926417 0.13172191 prediction 0.577591421134459 Functional Gain - ZNRF4 ENSG00000105428 CDS Human protein_coding chr19:5455681 chr19:5455685 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_102854 0 0 0 0 0 unknown 0.500231643949282 0.500231643921093 0 0 hm5C_site_55999 DeepMRMD:0;iRNA_m5C:0 56000 chr10 72633294 72633294 1 + T A LUAD 72633290 + 72633270 72633310 41 TTGATGCACTTCGGTGAGAACGGCTATGTTGAAGCTACCAA TTGATGCACTTCGGTGAGAACGGCAATGTTGAAGCTACCAA < 41bp 0.550041797540271 0.838835859594609 0.2840485 0.29238367 prediction 0.577588124108676 Functional Gain - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72633290 chr10:72633294 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102855 0 0 1 0 0 Ribosome 0.500231643921071 0.500231643921091 0 4.06341627012807e-14 hm5C_site_56000 DeepMRMD:0;iRNA_m5C:4.06341627012807e-14 56001 chr12 82824742 82824742 1 + T G rs146381244 82824740 + 82824720 82824760 41 AAGAGAGATGGTGCTGTGGTCGTAATGCCAGAATGTCAGCA AAGAGAGATGGTGCTGTGGTCGGAATGCCAGAATGTCAGCA < 41bp 0.468259970439613 0.788787472937983 0.19399601 0.36741424 prediction 0.577574945875965 Functional Gain - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82824740 chr12:82824742 synonymous SNV . 0 23 hm5C_associated_SNPs_102856 0 0 0 0 2 cytosol 0.500230701078106 0.500231394585162 0 1.38701411311892e-06 hm5C_site_56001 DeepMRMD:0;iRNA_m5C:1.38701411311892e-06 56002 chr5 170863108 170863108 1 + C G STAD 170863107 + 170863087 170863127 41 CCCTGCCCAGGTGCTGGTTGCCGAGGAGAACGTGGACTTCC CCCTGCCCAGGTGCTGGTTGCGGAGGAGAACGTGGACTTCC < 41bp 0.526812046302198 0.815596581551245 0.9142431 0.93182784 prediction 0.577569070498095 Functional Gain - FGF18 ENSG00000156427 CDS Human protein_coding chr5:170863107 chr5:170863108 synonymous SNV . 0 22 hm5C_associated_SNPs_102857 0 0 1 0 1 nucleolus 0.500231655367435 0.500231643921097 0.03516948 0 hm5C_site_56002 DeepMRMD:0.03516948;iRNA_m5C:0 56003 chr4 81967006 81967006 1 + T G UCEC 81967004 + 81966984 81967024 41 GGAGAGCTAGGAAACATCAGCCTGAGTTGTCCAGTGTCTGG GGAGAGCTAGGAAACATCAGCCGGAGTTGTCCAGTGTCTGG < 41bp 0.471309486691087 0.788778255397332 0.1005255 0.80740964 prediction 0.577556510794665 Functional Gain - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81967004 chr4:81967006 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_102858 0 0 0 0 0 Nucleus 0.500231643921097 0.500231643931701 0.61481928 2.12083683948094e-11 hm5C_site_56003 DeepMRMD:0.61481928;iRNA_m5C:2.12083683948094e-11 56004 chrX 147062975 147062975 1 + C A LUAD 147062971 + 147062951 147062991 41 GGAGGAATAGGAGAAGTCACCGTGCCATGCGTGTGGCTCAC GGAGGAATAGGAGAAGTCACCGTGACATGCGTGTGGCTCAC < 41bp 0.590812009014267 0.879588987630767 0.571428 0.7416938 prediction 0.577553957233 Functional Gain - FMR1NB ENSG00000176988 CDS Human protein_coding chrX:147062971 chrX:147062975 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_102859 0 0 0 0 0 exosome 0.500231647686715 0.500231643991453 0.3405316 0 hm5C_site_56004 DeepMRMD:0.3405316;iRNA_m5C:0 56005 chr9 136524413 136524413 1 + C A rs151115868 136524409 + 136524389 136524429 41 CTGTAAAACCAGGCTGATGCCGTGCGGGCTAATGAGCCAAT CTGTAAAACCAGGCTGATGCCGTGAGGGCTAATGAGCCAAT < 41bp 0.495690978794186 0.788773956991369 0.1706573 0.40506327 prediction 0.577547913982738 Functional Gain - DBH ENSG00000123454 UTR3 Human protein_coding chr9:136524409 chr9:136524413 . . 0 25 hm5C_associated_SNPs_102860 0 0 0 1 0 cytosol 0.500231643921243 0.500231643921093 0 0 hm5C_site_56005 DeepMRMD:0;iRNA_m5C:0 56006 chr3 152880765 152880765 1 + C A PRAD 152880761 + 152880741 152880781 41 CAGCAGAGCTTCCAGGACATCAAGCCCATGCGGGACCAGAT CAGCAGAGCTTCCAGGACATCAAGACCATGCGGGACCAGAT < 41bp 0.595644689514408 0.884416848266781 0.13982373 0.25968486 prediction 0.577544317504745 Functional Gain - RAP2B ENSG00000181467 CDS Human protein_coding chr3:152880761 chr3:152880765 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_102861 0 0 0 0 0 Ribosome 0.500231643921091 0.500231643921133 0 8.41549052665869e-14 hm5C_site_56006 DeepMRMD:0;iRNA_m5C:8.41549052665869e-14 56007 chr3 98110273 98110273 1 + T G UCEC 98110271 + 98110251 98110291 41 ATATTCTGTGATTCCCTTCTCTTCATGTATGCTCGACCAGG ATATTCTGTGATTCCCTTCTCTGCATGTATGCTCGACCAGG < 41bp 0.499312102460612 0.788761246423519 0.44438577 0.513309 prediction 0.577522492847037 Functional Gain - OR5K3 ENSG00000206536 CDS Human protein_coding chr3:98110271 chr3:98110273 nonsynonymous SNV 0.118 1 23 hm5C_associated_SNPs_102862 0 0 0 0 0 unknown 0.500268419558125 0.500231693646322 0.026618 0 hm5C_site_56007 DeepMRMD:0.026618;iRNA_m5C:0 56008 chr11 65384727 65384727 1 + C G rs12790427 65384726 + 65384706 65384746 41 CTTTTTCACCGCCAGGGACCCCGGAGTGGAGATGACAGTGT CTTTTTCACCGCCAGGGACCCGGGAGTGGAGATGACAGTGT < 41bp 0.518666779311102 0.807417006827338 0.39987135 0.8884032 prediction 0.577500455032471 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65384726 chr11:65384727 synonymous SNV . 0 22 hm5C_associated_SNPs_102863 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.7768064 0 hm5C_site_56008 DeepMRMD:0.7768064;iRNA_m5C:0 56009 chr5 23521209 23521209 1 + T A STAD 23521205 + 23521185 23521225 41 AACAGCAAATTTACTGAATGCAAGTGGCTCAGAGCAGGCTC AACAGCAAATTTACTGAATGCAAGAGGCTCAGAGCAGGCTC < 41bp 0.50440165463425 0.793137306622296 0.22057274 0.4291852 prediction 0.577471303976092 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23521205 chr5:23521209 nonsynonymous SNV 0.016 2 25 hm5C_associated_SNPs_102864 0 0 0 0 2 unknown 0.500235698079729 0.500231948947188 0 0 hm5C_site_56009 DeepMRMD:0;iRNA_m5C:0 56010 chr7 100390129 100390129 1 + C A LUAD 100390125 + 100390105 100390145 41 CGCCATCCTCTGCCAGGAGGCGGGCGCTGCCCTGGCTGGCT CGCCATCCTCTGCCAGGAGGCGGGAGCTGCCCTGGCTGGCT < 41bp 0.454036917928977 0.788730269523489 0.9019129 0.92087126 prediction 0.577460539046978 Functional Gain - ZAN ENSG00000146839 CDS Human protein_coding chr7:100390125 chr7:100390129 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_102865 0 0 0 0 1 cytosol 0.500231643921093 0.500231643921092 0.0379167199999999 0 hm5C_site_56010 DeepMRMD:0.0379167199999999;iRNA_m5C:0 56011 chr5 133873698 133873698 1 + C G SKCM 133873697 + 133873677 133873717 41 AGGTCATGCGACATCTACATCCGCATCAAGATGCTCCAAAC AGGTCATGCGACATCTACATCGGCATCAAGATGCTCCAAAC < 41bp 0.512881741992376 0.801605549675531 0.15401936 0.703517 prediction 0.577447615366309 Functional Gain - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133873697 chr5:133873698 synonymous SNV . 0 22 hm5C_associated_SNPs_102866 0 0 1 0 2 Cytosol 0.500231688840277 0.500231636342083 0.407034 0 hm5C_site_56011 DeepMRMD:0.407034;iRNA_m5C:0 56012 chr17 12656636 12656636 1 + C A SKCM 12656632 + 12656612 12656652 41 AGAAGGGCACAGGGTCTCCTCGCCCATCAGCAGCCAGGTGT AGAAGGGCACAGGGTCTCCTCGCCAATCAGCAGCCAGGTGT < 41bp 0.619743628041006 0.908455971916116 0.20075983 0.91873956 prediction 0.577424687750219 Functional Gain - MYOCD ENSG00000141052;ENSG00000273452 CDS Human other chr17:12656632 chr17:12656636 synonymous SNV . 0 25 hm5C_associated_SNPs_102867 0 0 0 0 1 exosome 0.500231643921083 0.500231643921184 0.83747912 2.00506278247303e-13 hm5C_site_56012 DeepMRMD:0.83747912;iRNA_m5C:2.00506278247303e-13 56013 chr11 55111380 55111380 1 + T G LUAD 55111377 + 55111357 55111397 41 TCAGGAAGAGAGGCATAAAGCCCTGCCTACCTGCATCTCCC TCAGGAAGAGAGGCATAAAGCCCGGCCTACCTGCATCTCCC < 41bp 0.415406829724371 0.788708221509182 0.040100873 0.72530055 prediction 0.577416443018363 Functional Gain - OR4A16 ENSG00000181961 CDS Human protein_coding chr11:55111377 chr11:55111380 nonsynonymous SNV 0.373 3 24 hm5C_associated_SNPs_102868 0 0 0 0 0 unknown 0.50023164392157 0.500231643921092 0.4506011 0 hm5C_site_56013 DeepMRMD:0.4506011;iRNA_m5C:0 56014 chr19 49651347 49651347 1 + C A OV 49651343 + 49651323 49651363 41 CCTGCCCATGGCCCCAGATCCTGGCATATGGCGACATGAAC CCTGCCCATGGCCCCAGATCCTGGAATATGGCGACATGAAC < 41bp 0.3884626222182 0.788692086744968 0.41483554 0.6119275 prediction 0.577384173489937 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49651343 chr19:49651347 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102869 0 0 0 0 0 Cytosol 0.500231294171402 0.500232439941259 0.223855 2.29153971242901e-06 hm5C_site_56014 DeepMRMD:0.223855;iRNA_m5C:2.29153971242901e-06 56015 chr4 76714942 76714942 1 + C A SKCM 76714938 + 76714918 76714958 41 GTGCTGCTGTGGCCCTTGCCCATGCGTTGCAAGAAAATGCC GTGCTGCTGTGGCCCTTGCCCATGAGTTGCAAGAAAATGCC < 41bp 0.393277658895674 0.788676910208335 0.11848706 0.1017966 prediction 0.57735382041667 Functional Gain - USO1 ENSG00000138768 CDS Human protein_coding chr4:76714938 chr4:76714942 nonsynonymous SNV 0.534 3 25 hm5C_associated_SNPs_102870 0 0 1 0 1 Nucleus 0.500231643941389 0.500231643999466 0 1.16152643059309e-10 hm5C_site_56015 DeepMRMD:0;iRNA_m5C:1.16152643059309e-10 56016 chr10 45496326 45496326 1 + T G rs73283471 45496323 + 45496303 45496343 41 ACCATAGAGGGTCGCTCCGCCACTTTCCTAGAGCGACCGCG ACCATAGAGGGTCGCTCCGCCACGTTCCTAGAGCGACCGCG < 41bp 0.441377411485 0.788665169069193 0.085480094 0.16605699 prediction 0.577330338138386 Functional Gain - C10orf25;ZNF22 ENSG00000165511;ENSG00000165512 UTR5 Human other chr10:45496323 chr10:45496326 . . 0 24 hm5C_associated_SNPs_102871 0 0 0 0 0 unknown 0.500231644671688 0.500231643663225 0 0 hm5C_site_56016 DeepMRMD:0;iRNA_m5C:0 56017 chr18 9887137 9887137 1 + C A UCEC 9887133 + 9887113 9887153 41 TCAGCAAAACCCATCCAGCCCAAGCTGGGCAATATTGCCAA TCAGCAAAACCCATCCAGCCCAAGATGGGCAATATTGCCAA < 41bp 0.60960601963445 0.898237177529269 0.03573239 0.19248062 prediction 0.577262315789639 Functional Gain - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9887133 chr18:9887137 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_102872 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56017 DeepMRMD:0;iRNA_m5C:0 56018 chr21 34793916 34793916 1 + T G UCEC 34793913 + 34793893 34793933 41 TTCCCAATGGATTTCAATGTCACTCTACGCCTTCGAGCTGA TTCCCAATGGATTTCAATGTCACGCTACGCCTTCGAGCTGA < 41bp 0.401023308751188 0.788616965343929 0.22539943 0.19178158 prediction 0.577233930687857 Functional Gain - IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34793913 chr21:34793916 synonymous SNV . 0 24 hm5C_associated_SNPs_102873 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231644263806 0 6.85427936630845e-10 hm5C_site_56018 DeepMRMD:0;iRNA_m5C:6.85427936630845e-10 56019 chr14 68191238 68191238 1 + C A LUAD 68191234 + 68191214 68191254 41 TAGAACAAATGTGCAGCTTCCTGGCAAGGTAGTGGTGATCA TAGAACAAATGTGCAGCTTCCTGGAAAGGTAGTGGTGATCA < 41bp 0.621142250437462 0.909755951537945 0.18943161 0.34711397 prediction 0.577227402200967 Functional Gain - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191234 chr14:68191238 synonymous SNV . 0 25 hm5C_associated_SNPs_102874 0 0 0 0 2 exosome 0.500231643921239 0.500231643922033 0 1.58717483600412e-12 hm5C_site_56019 DeepMRMD:0;iRNA_m5C:1.58717483600412e-12 56020 chr3 195452929 195452929 1 + C A rs565508901 195452925 + 195452905 195452945 41 TGCCGAGACCCTGTCCACAGCCGGCACCACAGAGTCAGCTG TGCCGAGACCCTGTCCACAGCCGGAACCACAGAGTCAGCTG < 41bp 0.392523397720309 0.78859440831036 0.21430051 0.30564827 prediction 0.57718881662072 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195452925 chr3:195452929 synonymous SNV . 0 25 hm5C_associated_SNPs_102875 0 0 0 0 0 Nucleus 0.500231576272784 0.500232091468482 0 1.03039139554006e-06 hm5C_site_56020 DeepMRMD:0;iRNA_m5C:1.03039139554006e-06 56021 chr20 39986973 39986973 1 + C A UCEC 39986969 + 39986949 39986989 41 CCACGGACAGCCCTTCTATGCTGCCTTTGGGAATAGGCCCA CCACGGACAGCCCTTCTATGCTGCATTTGGGAATAGGCCCA < 41bp 0.368027577031071 0.788579521372609 0.089746475 0.07826114 prediction 0.577159042745217 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986969 chr20:39986973 synonymous SNV . 0 25 hm5C_associated_SNPs_102876 0 0 1 2 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_56021 DeepMRMD:0;iRNA_m5C:0 56022 chr20 61919233 61919233 1 + T G rs540954738 61919230 + 61919210 61919250 41 CAACCAGAACTGGTAGGGCCCACTGCGCCCCCGTCCCCAGC CAACCAGAACTGGTAGGGCCCACGGCGCCCCCGTCCCCAGC < 41bp 0.410632797384752 0.788561010204706 0.13267243 0.47528931 prediction 0.577122020409412 Functional Gain - ARFGAP1 ENSG00000101199 UTR3 Human protein_coding chr20:61919230 chr20:61919233 . . 0 24 hm5C_associated_SNPs_102877 0 0 1 0 0 Nucleus 0.500231643770838 0.50023164529674 0 3.05180503090696e-09 hm5C_site_56022 DeepMRMD:0;iRNA_m5C:3.05180503090696e-09 56023 chr9 93606221 93606221 1 + C A UCEC 93606217 + 93606197 93606237 41 TGGCTGACAGCGCCAACCACCTGCCCTTCTTTTTCGGCAAC TGGCTGACAGCGCCAACCACCTGCACTTCTTTTTCGGCAAC < 41bp 0.378362346732132 0.788538718333346 0.038369745 0.06866342 prediction 0.577077436666693 Functional Gain - SYK ENSG00000165025 CDS Human protein_coding chr9:93606217 chr9:93606221 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_102878 0 0 0 0 0 Cytosol 0.500231643921081 0.500231644433978 0 1.0257945604053e-09 hm5C_site_56023 DeepMRMD:0;iRNA_m5C:1.0257945604053e-09 56024 chrX 153009062 153009062 1 + C A HNSC 153009058 + 153009038 153009078 41 AGCAGCGGCTGGAGCAGCAGCTGGCGGGCATTCCCAAGATG AGCAGCGGCTGGAGCAGCAGCTGGAGGGCATTCCCAAGATG < 41bp 0.603092988525297 0.89161417293493 0.400975 0.6469587 prediction 0.577042368819265 Functional Gain - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153009058 chrX:153009062 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_102879 0 0 0 0 0 nucleolus 0.500231629822846 0.50023164239315 0.2939174 2.51406078177752e-08 hm5C_site_56024 DeepMRMD:0.2939174;iRNA_m5C:2.51406078177752e-08 56025 chr16 55361687 55361687 1 + C A UCEC 55361683 + 55361663 55361703 41 GTCCACCTGGTTCGCCAACGCACGCCGGCGCCTCAAGAAAG GTCCACCTGGTTCGCCAACGCACGACGGCGCCTCAAGAAAG < 41bp 0.623508420809618 0.912004942520104 0.17781004 0.16778809 prediction 0.57699304342097 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361683 chr16:55361687 synonymous SNV . 0 25 hm5C_associated_SNPs_102880 0 0 0 0 0 exosome 0.500231643921078 0.500231643918516 0 0 hm5C_site_56025 DeepMRMD:0;iRNA_m5C:0 56026 chr1 29639188 29639188 1 + C G LUAD 29639187 + 29639167 29639207 41 GCGTGAAGGCCTCCACCCCACCTGATGCCGGGCCCATTGTC GCGTGAAGGCCTCCACCCCACGTGATGCCGGGCCCATTGTC < 41bp 0.494996766082454 0.788489238097592 0.062181532 0.18460959 prediction 0.576978476195184 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29639187 chr1:29639188 nonsynonymous SNV 0.952 4 22 hm5C_associated_SNPs_102881 0 0 1 0 1 Endoplasmic reticulum 0.500233142619079 0.500218754656251 0 0 hm5C_site_56026 DeepMRMD:0;iRNA_m5C:0 56027 chr8 24771822 24771822 1 + G T COAD 24771826 - 24771806 24771846 41 TTCCTCCAGGTGGTCCGAGTCCAGCTGCACCTGAGCCTTCT TTCCTCCAGGTGGTCCGAGTCCAGATGCACCTGAGCCTTCT < 41bp 0.435529939740839 0.788488388966984 0.33600506 0.66446745 prediction 0.576976777933969 Functional Gain - NEFM ENSG00000104722 CDS Human protein_coding chr8:24771826 chr8:24771822 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_102882 0 0 0 0 0 exosome 0.500231643921088 0.500231643921092 0.3289349 9.10382880192628e-15 hm5C_site_56027 DeepMRMD:0.3289349;iRNA_m5C:9.10382880192628e-15 56028 chr4 166794473 166794473 1 + C A rs58836415 166794469 + 166794449 166794489 41 CTTCTGCAGGCTTTTAAGGTCTCGCGGCGTAGAAATGCCTG CTTCTGCAGGCTTTTAAGGTCTCGAGGCGTAGAAATGCCTG < 41bp 0.443788243032941 0.788457915375676 0.18430775 0.8564227 prediction 0.576915830751351 Functional Gain - TLL1 ENSG00000038295 UTR5 Human protein_coding chr4:166794469 chr4:166794473 . . 0 25 hm5C_associated_SNPs_102883 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0.7128454 0 hm5C_site_56028 DeepMRMD:0.7128454;iRNA_m5C:0 56029 chr2 79253283 79253283 1 + T G rs148827158 79253280 + 79253260 79253300 41 TGCTTTCCTGCCTCATTCTCCTGTGTCAGGTTCAAGGTGAG TGCTTTCCTGCCTCATTCTCCTGGGTCAGGTTCAAGGTGAG < 41bp 0.409100977819805 0.788457270235404 0.14244905 0.87999386 prediction 0.576914540470808 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253280 chr2:79253283 nonsynonymous SNV 0.413 1 24 hm5C_associated_SNPs_102884 0 0 0 0 2 unknown 0.500231647870886 0.500231643921091 0.75998772 0 hm5C_site_56029 DeepMRMD:0.75998772;iRNA_m5C:0 56030 chr1 213134569 213134569 1 + C A LUAD 213134565 + 213134545 213134585 41 TGACGATCCCAGACTGGCTCCAGGCGATCCAGAATTACATG TGACGATCCCAGACTGGCTCCAGGAGATCCAGAATTACATG < 41bp 0.386065674145996 0.788454590825962 0.74391514 0.36750007 prediction 0.576909181651924 Functional Gain - VASH2 ENSG00000143494 CDS Human protein_coding chr1:213134565 chr1:213134569 nonsynonymous SNV 0.964 3 25 hm5C_associated_SNPs_102885 0 0 0 0 2 nucleoplasm 0.500242908066633 0.500232805820316 0 0 hm5C_site_56030 DeepMRMD:0;iRNA_m5C:0 56031 chr5 140720218 140720218 1 + C A SKCM 140720214 + 140720194 140720234 41 GCTGGACCAGAACGACAACGCGCCCGAGATCCTGTACCCTG GCTGGACCAGAACGACAACGCGCCAGAGATCCTGTACCCTG < 41bp 0.386221742038558 0.788452186009887 0.034923315 0.25022605 prediction 0.576904372019774 Functional Gain - PCDHGA2 ENSG00000081853 CDS Human protein_coding chr5:140720214 chr5:140720218 synonymous SNV . 0 25 hm5C_associated_SNPs_102886 0 0 0 0 0 exosome 0.50023137675257 0.500231643991571 0 5.34478002522931e-07 hm5C_site_56031 DeepMRMD:0;iRNA_m5C:5.34478002522931e-07 56032 chr11 55135606 55135606 1 + C G PRAD 55135605 + 55135585 55135625 41 ACCATCATGGCCAGCCAGTCCCTGGGTTCCCCCATGTACTT ACCATCATGGCCAGCCAGTCCGTGGGTTCCCCCATGTACTT < 41bp 0.500740223141254 0.789185371626446 0.020053148 0.06322625 prediction 0.576890296970383 Functional Gain - OR4A15 ENSG00000181958 CDS Human protein_coding chr11:55135605 chr11:55135606 nonsynonymous SNV 0.776 3 22 hm5C_associated_SNPs_102887 0 0 0 0 0 unknown 0.500231642921647 0.500231641878831 0 0 hm5C_site_56032 DeepMRMD:0;iRNA_m5C:0 56033 chr12 8926135 8926135 1 + C A THCA 8926131 + 8926111 8926151 41 ATCATAGCAGACTATGCCGCCTCCCTTCTACCCTCTGGCCG ATCATAGCAGACTATGCCGCCTCCATTCTACCCTCTGGCCG < 41bp 0.378436629858327 0.7884428531009 0.021045774 0.9413673 prediction 0.576885706201799 Functional Gain - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8926131 chr12:8926135 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_102888 0 0 1 0 0 chromatin 0.500231846888551 0.500231559061614 0.8827346 0 hm5C_site_56033 DeepMRMD:0.8827346;iRNA_m5C:0 56034 chr6 50683321 50683321 1 + T A UCEC 50683317 + 50683297 50683337 41 CTGGCCGCCGCGGGAGCAGACGACTTGCAGGTAAATAAGCA CTGGCCGCCGCGGGAGCAGACGACATGCAGGTAAATAAGCA < 41bp 0.535285555432644 0.823723571021863 0.39686915 0.39457116 prediction 0.576876031178438 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683317 chr6:50683321 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_102889 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_56034 DeepMRMD:0;iRNA_m5C:0 56035 chr3 98251890 98251890 1 + C A OV 98251886 + 98251866 98251906 41 CTGAGACATCAGATAGTCACCTCACTAAGGCTCTCTCCACC CTGAGACATCAGATAGTCACCTCAATAAGGCTCTCTCCACC < 41bp 0.390405858240887 0.788428942826151 0.0748153 0.0800682 prediction 0.576857885652301 Functional Gain - GPR15 ENSG00000154165 CDS Human protein_coding chr3:98251886 chr3:98251890 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_102890 0 0 0 0 0 exosome 0.500231603123722 0.50023164499131 0 8.37351759042093e-08 hm5C_site_56035 DeepMRMD:0;iRNA_m5C:8.37351759042093e-08 56036 chrX 37913589 37913589 1 + T A LUSC 37913585 + 37913565 37913605 41 AATCTTTGACCGGGGAGACCCTTGTCAGGCTTGCTCACTGA AATCTTTGACCGGGGAGACCCTTGACAGGCTTGCTCACTGA < 41bp 0.463326790283294 0.788411287381709 0.103111595 0.6602997 prediction 0.576822574763417 Functional Gain - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37913585 chrX:37913589 stopgain 0.739 1 25 hm5C_associated_SNPs_102891 0 0 0 0 1 cytosol 0.500231643921199 0.500231643921099 0.3205994 0 hm5C_site_56036 DeepMRMD:0.3205994;iRNA_m5C:0 56037 chr5 161128675 161128675 1 + T G LUAD 161128672 + 161128652 161128692 41 GAGGCACCAGTAAAATAGACCAGTATTCTCGAATTCTCTTC GAGGCACCAGTAAAATAGACCAGGATTCTCGAATTCTCTTC < 41bp 0.59350301448875 0.881910799238877 0.13933659 0.3441742 prediction 0.576815569500254 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161128672 chr5:161128675 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_102892 0 0 0 0 0 unknown 0.500231620562249 0.500231643915589 0 4.67066796350224e-08 hm5C_site_56037 DeepMRMD:0;iRNA_m5C:4.67066796350224e-08 56038 chr7 127326753 127326753 1 + T G SKCM 127326751 + 127326731 127326771 41 AGATCAACCTCAGCAACATTCGTGCTGGAAATCTTGCTCGC AGATCAACCTCAGCAACATTCGGGCTGGAAATCTTGCTCGC < 41bp 0.545536825287943 0.833936182892828 0.502811 0.9286048 prediction 0.57679871520977 Functional Gain - SND1 ENSG00000197157 CDS Human protein_coding chr7:127326751 chr7:127326753 synonymous SNV . 0 23 hm5C_associated_SNPs_102893 0 0 1 0 2 Cytosol 0.500231697981687 0.500231643949123 0.8515876 0 hm5C_site_56038 DeepMRMD:0.8515876;iRNA_m5C:0 56039 chr19 4290623 4290623 1 + C A OV 4290619 + 4290599 4290639 41 TGCTGTACCCCGTGGTCACGCAGACCCCCTGACAGTGACCC TGCTGTACCCCGTGGTCACGCAGAACCCCTGACAGTGACCC < 41bp 0.408498766709237 0.788372624091156 0.15552148 0.19507983 prediction 0.576745248182312 Functional Gain - SHD ENSG00000105251 CDS Human protein_coding chr19:4290619 chr19:4290623 nonsynonymous SNV 0.178 2 25 hm5C_associated_SNPs_102894 0 0 0 0 0 exosome 0.500231644627722 0.500231641625993 0 0 hm5C_site_56039 DeepMRMD:0;iRNA_m5C:0 56040 chr5 128302033 128302033 1 + C A SKCM 128302029 + 128302009 128302049 41 TCTTGAGTCATGCCAAAAGACAACCTCGGAAACCTTTCATC TCTTGAGTCATGCCAAAAGACAACATCGGAAACCTTTCATC < 41bp 0.377952185743079 0.788346367669252 0.04584831 0.038197845 prediction 0.576692735338504 Functional Gain - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128302029 chr5:128302033 nonsynonymous SNV 0.007 4 25 hm5C_associated_SNPs_102895 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_56040 DeepMRMD:0;iRNA_m5C:0 56041 chr6 73843258 73843258 1 + C A COAD 73843254 + 73843234 73843274 41 GTCCCCAAGCACCGACATCACAGCCGAGGGCAGTCCCACCA GTCCCCAAGCACCGACATCACAGCAGAGGGCAGTCCCACCA < 41bp 0.596642279111466 0.884986680362305 0.2276547 0.4518049 prediction 0.576688802501677 Functional Gain - KCNQ5 ENSG00000185760 CDS Human protein_coding chr6:73843254 chr6:73843258 synonymous SNV . 0 25 hm5C_associated_SNPs_102896 0 0 0 0 0 chromatin 0.500231643928644 0.500231643921092 0 0 hm5C_site_56041 DeepMRMD:0;iRNA_m5C:0 56042 chr11 34988219 34988219 1 + C A OV 34988215 + 34988195 34988235 41 TCAAACTTGTCCAGTTGAAACAAACGGGCAAGATTACCGAG TCAAACTTGTCCAGTTGAAACAAAAGGGCAAGATTACCGAG < 41bp 0.391168507891842 0.788343935918341 0.08751467 0.11740771 prediction 0.576687871836681 Functional Gain - PDHX ENSG00000110435 CDS Human protein_coding chr11:34988215 chr11:34988219 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_102897 0 0 1 0 1 Ribosome 0.500231643933208 0.500231643870533 0 0 hm5C_site_56042 DeepMRMD:0;iRNA_m5C:0 56043 chr16 57788877 57788877 1 + C A LAML 57788873 + 57788853 57788893 41 GCAAAGGAGGCAGCAAAGCCCAGCCCTGCCATGGATGTGCA GCAAAGGAGGCAGCAAAGCCCAGCACTGCCATGGATGTGCA < 41bp 0.376458130809991 0.788327132350498 0.23264298 0.27595216 prediction 0.576654264700996 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57788873 chr16:57788877 nonsynonymous SNV 0.913 0 25 hm5C_associated_SNPs_102898 0 0 1 0 2 Cytosol 0.500231643921092 0.500232314254678 0 1.34066717105696e-06 hm5C_site_56043 DeepMRMD:0;iRNA_m5C:1.34066717105696e-06 56044 chr20 30232770 30232770 1 + C A rs186388831 30232766 + 30232746 30232786 41 CTGGGAGCCTCTGGCGGCCCCTCCCCTCCCCTGCCCTTAAC CTGGGAGCCTCTGGCGGCCCCTCCACTCCCCTGCCCTTAAC < 41bp 0.43533011347141 0.788315454528492 0.04476288 0.93919355 prediction 0.576630909056984 Functional Gain - COX4I2 ENSG00000131055 UTR3 Human protein_coding chr20:30232766 chr20:30232770 . . 0 25 hm5C_associated_SNPs_102899 0 0 0 0 0 exosome 0.500231643921094 0.500231643921092 0.8783871 0 hm5C_site_56044 DeepMRMD:0.8783871;iRNA_m5C:0 56045 chr14 20585846 20585846 1 + T A LAML 20585842 + 20585822 20585862 41 TGAATACTCCCATGTATTTTCTCCTTGGTAATCTCTCTTTT TGAATACTCCCATGTATTTTCTCCATGGTAATCTCTCTTTT < 41bp 0.475085171137944 0.78827225524018 0.16402486 0.96613055 prediction 0.57654451048036 Functional Gain - OR4K17 ENSG00000176230 CDS Human protein_coding chr14:20585842 chr14:20585846 nonsynonymous SNV 0.970 3 25 hm5C_associated_SNPs_102900 0 0 0 0 0 unknown 0.500231643898216 0.500231635702071 0.9322611 0 hm5C_site_56045 DeepMRMD:0.9322611;iRNA_m5C:0 56046 chr19 7573279 7573279 1 + C G LUSC 7573278 + 7573258 7573298 41 AGAAGATAGACCCTCTGGTCCCCCAGCCCCCTATGTACCTG AGAAGATAGACCCTCTGGTCCGCCAGCCCCCTATGTACCTG < 41bp 0.496124668593158 0.788263908853995 0.08391026 0.11306828 prediction 0.57652781770799 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7573278 chr19:7573279 nonsynonymous SNV 0.003 3 22 hm5C_associated_SNPs_102901 0 0 0 0 0 unknown 0.500231643921092 0.50023164392109 0 0 hm5C_site_56046 DeepMRMD:0;iRNA_m5C:0 56047 chr2 47302283 47302283 1 + T G rs7584353 47302281 + 47302261 47302301 41 GCTGTTGGAGACCCCCCATCCATGGCACACTAGCTCAGCAC GCTGTTGGAGACCCCCCATCCAGGGCACACTAGCTCAGCAC < 41bp 0.528288474308205 0.816540328981117 0.18889791 0.8935737 prediction 0.576503709345825 Functional Gain - TTC7A ENSG00000068724 UTR3 Human protein_coding chr2:47302281 chr2:47302283 . . 0 23 hm5C_associated_SNPs_102902 0 0 0 0 0 Nucleus 0.500231643921093 0.500231717485481 0.7871474 1.47128777161498e-07 hm5C_site_56047 DeepMRMD:0.7871474;iRNA_m5C:1.47128777161498e-07 56048 chr22 21044504 21044504 1 + C G rs10427707 21044503 + 21044483 21044523 41 TGGTGATCAGAGAAGGGTCCCCGAGGTCACCGGGGATGCAC TGGTGATCAGAGAAGGGTCCCGGAGGTCACCGGGGATGCAC < 41bp 0.520625310605993 0.808865498657171 0.35638237 0.88382995 prediction 0.576480376102356 Functional Gain - POM121L4P ENSG00000217261 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:21044503 chr22:21044504 . . 0 22 hm5C_associated_SNPs_102903 0 0 0 0 0 unknown 0.500231648647071 0.500231646669605 0.7676599 0 hm5C_site_56048 DeepMRMD:0.7676599;iRNA_m5C:0 56049 chr15 102296145 102296145 1 + G T STAD 102296149 - 102296129 102296169 41 CACGAGTGTCTTCTCGTTCCCACGCGAGTGCAGGTTGGACA CACGAGTGTCTTCTCGTTCCCACGAGAGTGCAGGTTGGACA < 41bp 0.564474003378665 0.852707590637433 0.3102963 0.19358715 prediction 0.576467174517535 Functional Gain - LOC100128108;OR4F6 ENSG00000259660 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102296149 chr15:102296145 . . 0 25 hm5C_associated_SNPs_102904 0 0 0 0 0 unknown 0.500231980033205 0.500230197104647 0 0 hm5C_site_56049 DeepMRMD:0;iRNA_m5C:0 56050 chr19 4792619 4792619 1 + T G STAD 4792617 + 4792597 4792637 41 TCGCAGGGGGAGAGGCTCAGCCTGGGCTGCCCCAAGAAGAC TCGCAGGGGGAGAGGCTCAGCCGGGGCTGCCCCAAGAAGAC < 41bp 0.567170327081626 0.855376284779634 0.21823862 0.9094094 prediction 0.576411915396017 Functional Gain - FEM1A ENSG00000141965 CDS Human protein_coding chr19:4792617 chr19:4792619 synonymous SNV . 0 23 hm5C_associated_SNPs_102905 0 0 0 0 0 Ribosome 0.500231643921012 0.500231643923826 0.8188188 5.62683233340522e-12 hm5C_site_56050 DeepMRMD:0.8188188;iRNA_m5C:5.62683233340522e-12 56051 chr19 47770032 47770032 1 + C G rs60383222 47770031 + 47770011 47770051 41 GTGGAGGCGCGAGTGGGATGCCGAGAAGACCGATGGGATGT GTGGAGGCGCGAGTGGGATGCGGAGAAGACCGATGGGATGT < 41bp 0.522186513299511 0.810386234588913 0.6932428 0.9000595 prediction 0.576399442578803 Functional Gain - CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47770031 chr19:47770032 synonymous SNV . 0 22 hm5C_associated_SNPs_102906 0 0 1 0 1 chromatin 0.500231643921424 0.500231643921142 0.4136334 0 hm5C_site_56051 DeepMRMD:0.4136334;iRNA_m5C:0 56052 chr2 109411018 109411018 1 + C A LGG 109411014 + 109410994 109411034 41 AGTTGCCTTGCCAACTAATACGACCTCATCGAGACCTCGGA AGTTGCCTTGCCAACTAATACGACATCATCGAGACCTCGGA < 41bp 0.393894510636818 0.788191913839742 0.03802538 0.05428505 prediction 0.576383827679485 Functional Gain - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109411014 chr2:109411018 synonymous SNV . 0 25 hm5C_associated_SNPs_102907 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921575 0 9.65671986818961e-13 hm5C_site_56052 DeepMRMD:0;iRNA_m5C:9.65671986818961e-13 56053 chr21 46047799 46047799 1 + T G ACC 46047797 + 46047777 46047817 41 CTGTGTCCCTCCTCTGCCGCCCTGTGTGCAGGCCCGCCTGC CTGTGTCCCTCCTCTGCCGCCCGGTGTGCAGGCCCGCCTGC < 41bp 0.454407330328665 0.788179671582876 0.29165703 0.92819595 prediction 0.576359343165752 Functional Gain - KRTAP10-9 ENSG00000221837 CDS Human protein_coding chr21:46047797 chr21:46047799 synonymous SNV . 0 23 hm5C_associated_SNPs_102908 0 0 0 0 0 unknown 0.500231704495841 0.500231644967045 0.8563919 0 hm5C_site_56053 DeepMRMD:0.8563919;iRNA_m5C:0 56054 chr3 52818383 52818383 1 + C A UCEC 52818379 + 52818359 52818399 41 CGGGGCAGGTTCCCGCTCTACAACCTGGGTTTCGGCCACAA CGGGGCAGGTTCCCGCTCTACAACATGGGTTTCGGCCACAA < 41bp 0.362308164450335 0.788176868523129 0.09575069 0.030168653 prediction 0.576353737046258 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52818379 chr3:52818383 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_102909 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_56054 DeepMRMD:0;iRNA_m5C:0 56055 chrX 67944166 67944166 1 + T A GBM 67944162 + 67944142 67944182 41 CCTAGGGGCCGTTCTCCTGACTGGTACAACAAAGTCTTTGG CCTAGGGGCCGTTCTCCTGACTGGAACAACAAAGTCTTTGG < 41bp 0.48444269766361 0.788156025050533 0.05327478 0.08220783 prediction 0.576312050101065 Functional Gain - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67944162 chrX:67944166 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102910 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921123 0 6.15063555642337e-14 hm5C_site_56055 DeepMRMD:0;iRNA_m5C:6.15063555642337e-14 56056 chr19 7573098 7573098 1 + T A rs475923 7573094 + 7573074 7573114 41 TCCACCCTGTCTCCACAGTGCAAGTACAGCCACATGGAGCC TCCACCCTGTCTCCACAGTGCAAGAACAGCCACATGGAGCC < 41bp 0.491405271645943 0.788148895458538 0.18160534 0.22259524 prediction 0.576297790917075 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7573094 chr19:7573098 nonsynonymous SNV 0.913 2 25 hm5C_associated_SNPs_102911 0 0 0 0 1 unknown 0.500231643920375 0.500231643919593 0 0 hm5C_site_56056 DeepMRMD:0;iRNA_m5C:0 56057 chr3 52233326 52233326 1 + C A LAML 52233322 + 52233302 52233342 41 CCAGGCCTTTCTGCAGAAAGCAGGCAAATCTCTGTTGTTCT CCAGGCCTTTCTGCAGAAAGCAGGAAAATCTCTGTTGTTCT < 41bp 0.612376251631889 0.900522195366866 0.71279985 0.6238295 prediction 0.576291887469954 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233322 chr3:52233326 synonymous SNV . 0 25 hm5C_associated_SNPs_102912 0 0 1 0 1 Cytosol 0.50023166493041 0.500231644501764 0 0 hm5C_site_56057 DeepMRMD:0;iRNA_m5C:0 56058 chr1 228362513 228362513 1 + C A rs148398789 228362509 + 228362489 228362529 41 GCGGAAGGTCACGGTGGAGCCGCACCCGGAGCTGCGAGTGT GCGGAAGGTCACGGTGGAGCCGCAACCGGAGCTGCGAGTGT < 41bp 0.397923468075854 0.788140583241606 0.19196135 0.49650204 prediction 0.576281166483212 Functional Gain - IBA57 ENSG00000181873 CDS Human protein_coding chr1:228362509 chr1:228362513 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_102913 0 0 1 0 0 Ribosome 0.500231643921068 0.500231643919993 0 0 hm5C_site_56058 DeepMRMD:0;iRNA_m5C:0 56059 chr1 41236498 41236498 1 + T A UCEC 41236494 + 41236474 41236514 41 CAGGCCCCCCAGGTGACCGGCGACTGAGGGCCTGAGCTGGC CAGGCCCCCCAGGTGACCGGCGACAGAGGGCCTGAGCTGGC < 41bp 0.485867711387724 0.788136214848128 0.45351195 0.7403736 prediction 0.576272429696255 Functional Gain - NFYC ENSG00000066136 CDS Human protein_coding chr1:41236494 chr1:41236498 stoploss 1.000 0 25 hm5C_associated_SNPs_102914 0 0 1 0 0 Ribosome 0.500231645408855 0.50023258947715 0.4807472 1.88813659041109e-06 hm5C_site_56059 DeepMRMD:0.4807472;iRNA_m5C:1.88813659041109e-06 56060 chr16 76509917 76509917 1 + T A COAD 76509913 + 76509893 76509933 41 TCATTGTAACTGTACCAACACTGGTTACAGAGGAGCTACTT TCATTGTAACTGTACCAACACTGGATACAGAGGAGCTACTT < 41bp 0.464733507633274 0.788133270485435 0.07367304 0.16358751 prediction 0.576266540970869 Functional Gain - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76509913 chr16:76509917 synonymous SNV . 0 25 hm5C_associated_SNPs_102915 0 0 0 0 2 exosome 0.50023162913265 0.500231640840648 0 2.34159962531066e-08 hm5C_site_56060 DeepMRMD:0;iRNA_m5C:2.34159962531066e-08 56061 chr14 69925257 69925257 1 + C G LIHC 69925256 + 69925236 69925276 41 AGCCGCCTGGAAGTGGCAGCCCTGGTTCTGGGTTGCCTCAT AGCCGCCTGGAAGTGGCAGCCGTGGTTCTGGGTTGCCTCAT < 41bp 0.509281815539195 0.797406292390245 0.732962 0.88754696 prediction 0.5762489537021 Functional Gain - SLC39A9 ENSG00000029364 CDS Human protein_coding chr14:69925256 chr14:69925257 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_102916 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.30916992 0 hm5C_site_56061 DeepMRMD:0.30916992;iRNA_m5C:0 56062 chr3 127325501 127325501 1 + C A LIHC 127325497 + 127325477 127325517 41 CCGCACCAGTGGGGTGGTGACCAGCTGCACTGGCGTCCTGC CCGCACCAGTGGGGTGGTGACCAGATGCACTGGCGTCCTGC < 41bp 0.38961685984914 0.788096171928522 0.8958321 0.921178 prediction 0.576192343857043 Functional Gain - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127325497 chr3:127325501 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_102917 0 0 1 0 1 Cytosol 0.500231644235019 0.500231643989893 0.0506918000000001 0 hm5C_site_56062 DeepMRMD:0.0506918000000001;iRNA_m5C:0 56063 chr7 140373447 140373447 1 + T G LUAD 140373444 + 140373424 140373464 41 CCTCTGGCTTCGCGCCGGCGCTCTGTTGGTGAAATTCTTCC CCTCTGGCTTCGCGCCGGCGCTCGGTTGGTGAAATTCTTCC < 41bp 0.406977909453374 0.78809259826672 0.09773901 0.14825681 prediction 0.576185196533439 Functional Gain - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140373444 chr7:140373447 nonsynonymous SNV 0.043 4 24 hm5C_associated_SNPs_102918 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56063 DeepMRMD:0;iRNA_m5C:0 56064 chr3 52740186 52740186 1 + T G STAD 52740184 + 52740164 52740204 41 GCGCAGTGCCAGACCTTACCCCTCACGGTCCTTAAGTCTCG GCGCAGTGCCAGACCTTACCCCGCACGGTCCTTAAGTCTCG < 41bp 0.557665995097082 0.845758453493767 0.03351584 0.07903588 prediction 0.57618491679337 Functional Gain - SPCS1 ENSG00000114902 CDS Human protein_coding chr3:52740184 chr3:52740186 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_102919 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56064 DeepMRMD:0;iRNA_m5C:0 56065 chr9 136269152 136269152 1 + C A LUAD 136269148 + 136269128 136269168 41 TGAACAATGCCTACCGGGGACTGGCCAGCCTGGTGAAGGTG TGAACAATGCCTACCGGGGACTGGACAGCCTGGTGAAGGTG < 41bp 0.380406181972504 0.788092190520638 0.047360897 0.13516358 prediction 0.576184381041277 Functional Gain - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136269148 chr9:136269152 nonsynonymous SNV 0.181 3 25 hm5C_associated_SNPs_102920 0 0 0 0 1 nucleolus 0.500231681300429 0.500231650642874 0 0 hm5C_site_56065 DeepMRMD:0;iRNA_m5C:0 56066 chr5 75581094 75581094 1 + C A LUSC 75581090 + 75581070 75581110 41 TCCGTGGTGGCCCTCACATTCATGCCTGAAAGCCCACGATT TCCGTGGTGGCCCTCACATTCATGACTGAAAGCCCACGATT < 41bp 0.39537362226397 0.788089777928997 0.32590127 0.25707686 prediction 0.576179555857994 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75581090 chr5:75581094 nonsynonymous SNV 0.991 5 25 hm5C_associated_SNPs_102921 0 0 0 0 1 exosome 0.500231643921756 0.500231643933978 0 2.44433362439622e-11 hm5C_site_56066 DeepMRMD:0;iRNA_m5C:2.44433362439622e-11 56067 chr4 147561058 147561058 1 + C G STAD 147561057 + 147561037 147561077 41 CTGGATGAGAGTCTGCTGGCCCGCGCCGAGGCTCTGGCAGC CTGGATGAGAGTCTGCTGGCCGGCGCCGAGGCTCTGGCAGC < 41bp 0.490774093245464 0.788081023272132 0.13927129 0.49807996 prediction 0.576162046544264 Functional Gain - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147561057 chr4:147561058 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_102922 0 0 0 0 1 unknown 0.50023164392341 0.500231643946217 0 4.5615067278959e-11 hm5C_site_56067 DeepMRMD:0;iRNA_m5C:4.5615067278959e-11 56068 chr19 42814809 42814809 1 + C A rs1055512 42814805 + 42814785 42814825 41 GTCCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAG GTCCTGGACTGGAGCCCCAGCCCCACTTCCCCACTGCCCAG < 41bp 0.38598774459039 0.788079127746404 0.10367325 0.23124343 prediction 0.576158255492808 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814805 chr19:42814809 nonsynonymous SNV 0.076 1 25 hm5C_associated_SNPs_102923 0 0 0 6 0 exosome 0.500231643921092 0.500231633892909 0 0 hm5C_site_56068 DeepMRMD:0;iRNA_m5C:0 56069 chr16 31213851 31213851 1 + T A ACC 31213847 + 31213827 31213867 41 TCCAGGTAGAAGCTGACCAGCTTGTCGGTGAGGTCCAAGGC TCCAGGTAGAAGCTGACCAGCTTGACGGTGAGGTCCAAGGC < 41bp 0.482489289325016 0.788076094486233 0.3878015 0.4206862 prediction 0.576152188972467 Functional Gain - PYCARD ENSG00000103490;ENSG00000261359 CDS Human other chr16:31213847 chr16:31213851 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_102924 0 0 1 0 1 Ribosome 0.500231643919801 0.500231643919817 0 3.15303338993544e-14 hm5C_site_56069 DeepMRMD:0;iRNA_m5C:3.15303338993544e-14 56070 chr1 155106494 155106494 1 + T G SKCM 155106491 + 155106471 155106511 41 TGCTGCCCCACGCCTCTTCCCACTTGCCTGGACTGTGCTGC TGCTGCCCCACGCCTCTTCCCACGTGCCTGGACTGTGCTGC < 41bp 0.408781992257519 0.788058784673838 0.3032372 0.87900364 prediction 0.576117569347677 Functional Gain - EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106491 chr1:155106494 nonsynonymous SNV 0.987 2 24 hm5C_associated_SNPs_102925 0 0 1 0 1 Endoplasmic reticulum 0.500232595959983 0.50023145621236 0.75800728 0 hm5C_site_56070 DeepMRMD:0.75800728;iRNA_m5C:0 56071 chrX 55030265 55030265 1 + C A CESC 55030261 + 55030241 55030281 41 CATTCTGGGTGACCTGAATACAGCCCACCGCCCCATTGACC CATTCTGGGTGACCTGAATACAGCACACCGCCCCATTGACC < 41bp 0.370308318176757 0.788050977217682 0.10879761 0.06545383 prediction 0.576101954435364 Functional Gain - APEX2 ENSG00000169188 CDS Human protein_coding chrX:55030261 chrX:55030265 synonymous SNV . 0 25 hm5C_associated_SNPs_102926 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643920609 0 0 hm5C_site_56071 DeepMRMD:0;iRNA_m5C:0 56072 chr15 43891105 43891105 1 + C A rs147081553 43891101 + 43891081 43891121 41 AGGAGTGGACACTGCTGCTACAGGCGGTGTCTTTGATATTT AGGAGTGGACACTGCTGCTACAGGAGGTGTCTTTGATATTT < 41bp 0.60606234888449 0.894111428770007 0.53594553 0.6421698 prediction 0.576098159771034 Functional Gain - CKMT1B ENSG00000237289 CDS Human protein_coding chr15:43891101 chr15:43891105 synonymous SNV . 0 25 hm5C_associated_SNPs_102927 0 0 0 0 2 Cytosol 0.500231644648947 0.500231662105233 0.21244854 3.49125719445453e-08 hm5C_site_56072 DeepMRMD:0.21244854;iRNA_m5C:3.49125719445453e-08 56073 chr22 37333549 37333549 1 + C G ACC 37333548 + 37333528 37333568 41 GATCTACCCACAGAGCAGCCCCCCAGCCCCCAGCCAGGCCC GATCTACCCACAGAGCAGCCCGCCAGCCCCCAGCCAGGCCC < 41bp 0.522955118880288 0.81098595386458 0.096064866 0.24285075 prediction 0.576061669968584 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37333548 chr22:37333549 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_102928 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_56073 DeepMRMD:0;iRNA_m5C:0 56074 chr1 155152224 155152224 1 + C A BLCA 155152220 + 155152200 155152240 41 TGGCACTATACCGTTGAGTTCCGGCGCACGGATGTGCCTGC TGGCACTATACCGTTGAGTTCCGGAGCACGGATGTGCCTGC < 41bp 0.58896153789703 0.876990809816436 0.49727005 0.8383627 prediction 0.576058543838813 Functional Gain - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155152220 chr1:155152224 nonsynonymous SNV 0.983 4 25 hm5C_associated_SNPs_102929 0 0 0 0 0 nucleolus 0.500231646211021 0.50023164393958 0.6767254 0 hm5C_site_56074 DeepMRMD:0.6767254;iRNA_m5C:0 56075 chr5 135266034 135266034 1 + C A rs558040413 135266030 + 135266010 135266050 41 GCGGCTGCGGTCTGCGCGGACCCCCGTGCCTAGGCGCTCCT GCGGCTGCGGTCTGCGCGGACCCCAGTGCCTAGGCGCTCCT < 41bp 0.45501206246686 0.788012049234198 0.26501274 0.6056318 prediction 0.576024098468396 Functional Gain - FBXL21 ENSG00000145826 intronic Human protein_coding chr5:135266030 chr5:135266034 . . 0 25 hm5C_associated_SNPs_102930 0 0 0 0 0 unknown 0.500231644516032 0.500231623773659 0.2112636 0 hm5C_site_56075 DeepMRMD:0.2112636;iRNA_m5C:0 56076 chr1 15813791 15813791 1 + T A BLCA 15813787 + 15813767 15813807 41 TGGCCTTCCTCAGGGAGACTCCGGTGGGCCGCTGAACTGTC TGGCCTTCCTCAGGGAGACTCCGGAGGGCCGCTGAACTGTC < 41bp 0.501519277307152 0.789527813842181 0.91999114 0.92431384 prediction 0.576017073070058 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15813787 chr1:15813791 synonymous SNV . 0 25 hm5C_associated_SNPs_102931 0 0 0 0 1 unknown 0.500213638947879 0.500230299099143 0.00864540000000003 3.3320302527784e-05 hm5C_site_56076 DeepMRMD:0.00864540000000003;iRNA_m5C:3.3320302527784e-05 56077 chr4 96051132 96051132 1 + C G rs56083112 96051131 + 96051111 96051151 41 AGCTGTGAAAGTGTTCTTCACCACAGAGGAAGCCAGCTGGT AGCTGTGAAAGTGTTCTTCACGACAGAGGAAGCCAGCTGGT < 41bp 0.497272273028949 0.788003919728702 0.08635491 0.18378526 prediction 0.576007839457404 Functional Gain - BMPR1B ENSG00000138696 CDS Human protein_coding chr4:96051131 chr4:96051132 synonymous SNV . 0 22 hm5C_associated_SNPs_102932 0 0 0 0 1 Nucleus 0.50023164391679 0.500231460499821 0 0 hm5C_site_56077 DeepMRMD:0;iRNA_m5C:0 56078 chr19 54395039 54395039 1 + C A LUAD 54395035 + 54395015 54395055 41 ACCTGACGAAACAGAAGACCCGAACGGTGAAAGCCACGCTA ACCTGACGAAACAGAAGACCCGAAAGGTGAAAGCCACGCTA < 41bp 0.399173602008094 0.788002671161251 0.2015459 0.32435077 prediction 0.576005342322502 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54395035 chr19:54395039 nonsynonymous SNV 0.976 3 25 hm5C_associated_SNPs_102933 0 0 0 0 1 Cytosol 0.500231643866574 0.50023164392853 0 1.23912435867624e-10 hm5C_site_56078 DeepMRMD:0;iRNA_m5C:1.23912435867624e-10 56079 chr16 86325332 86325332 1 + C A rs562780473 86325328 + 86325308 86325348 41 GCCCATCCGTCCCTGTCTCTCTGACACACGGTCACCACGTG GCCCATCCGTCCCTGTCTCTCTGAAACACGGTCACCACGTG < 41bp 0.4400325933484 0.787998908631225 0.24337527 0.38446364 prediction 0.57599781726245 Functional Gain - LINC02135 ENSG00000268532 ncRNA_exonic Human lincRNA chr16:86325328 chr16:86325332 . . 0 25 hm5C_associated_SNPs_102934 0 0 0 0 0 unknown 0.500231643792761 0.50023164389595 0 2.06378247824546e-10 hm5C_site_56079 DeepMRMD:0;iRNA_m5C:2.06378247824546e-10 56080 chr12 2930009 2930009 1 + T A STAD 2930005 + 2929985 2930025 41 GAAAAAGGACACTGGGTCCCCTCCTGCCTCTGAAGGGCCCA GAAAAAGGACACTGGGTCCCCTCCAGCCTCTGAAGGGCCCA < 41bp 0.569299636076202 0.857280222043948 0.08927694 0.9330745 prediction 0.575961171935491 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930005 chr12:2930009 synonymous SNV . 0 25 hm5C_associated_SNPs_102935 0 0 1 0 1 nucleoplasm 0.500231643918688 0.5002316439579 0.866149 7.84243781026817e-11 hm5C_site_56080 DeepMRMD:0.866149;iRNA_m5C:7.84243781026817e-11 56081 chr10 131565073 131565073 1 + C G BLCA 131565072 + 131565052 131565092 41 GTCCCCATCCTCATCCCGTGCCACAGAGTGGTCTGCAGCAG GTCCCCATCCTCATCCCGTGCGACAGAGTGGTCTGCAGCAG < 41bp 0.497777584027998 0.787970988482053 0.08517516 0.16437697 prediction 0.575941976964107 Functional Gain - MGMT ENSG00000170430 CDS Human protein_coding chr10:131565072 chr10:131565073 nonsynonymous SNV 0.390 4 22 hm5C_associated_SNPs_102936 0 0 1 0 1 Ribosome 0.500231716134968 0.50023166531956 0 0 hm5C_site_56081 DeepMRMD:0;iRNA_m5C:0 56082 chr5 113831826 113831826 1 + A T LUAD 113831830 - 113831810 113831850 41 CTGTGGAAGAGGACCGCCGCCTCCTGGACGAGGACCGGGAC CTGTGGAAGAGGACCGCCGCCTCCAGGACGAGGACCGGGAC < 41bp 0.480659664474829 0.787962513404934 0.08195895 0.8995864 prediction 0.575925026809868 Functional Gain - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113831830 chr5:113831826 nonsynonymous SNV 0.987 5 25 hm5C_associated_SNPs_102937 0 0 0 0 2 Cytosol 0.500231643920969 0.500231643921077 0.7991728 2.1582735598713e-13 hm5C_site_56082 DeepMRMD:0.7991728;iRNA_m5C:2.1582735598713e-13 56083 chr3 98188464 98188464 1 + C A LUSC 98188460 + 98188440 98188480 41 CCATGAAAAATGAGTTTATCCTCACAGGATTTACAGATCAC CCATGAAAAATGAGTTTATCCTCAAAGGATTTACAGATCAC < 41bp 0.419721584647081 0.78796244792234 0.018075258 0.25201213 prediction 0.57592489584468 Functional Gain - OR5K1 ENSG00000232382 CDS Human protein_coding chr3:98188460 chr3:98188464 nonsynonymous SNV 0.951 0 25 hm5C_associated_SNPs_102938 0 0 0 0 0 unknown 0.500231643921095 0.500231643921092 0 0 hm5C_site_56083 DeepMRMD:0;iRNA_m5C:0 56084 chr10 95400215 95400215 1 + C G LUAD 95400214 + 95400194 95400234 41 CATCTTCTTTTAGGTTCTTACCAGATGGATGTACACTGTGA CATCTTCTTTTAGGTTCTTACGAGATGGATGTACACTGTGA < 41bp 0.48741591274889 0.787958145596063 0.51770353 0.88087916 prediction 0.575916291192125 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400214 chr10:95400215 synonymous SNV . 0 22 hm5C_associated_SNPs_102939 0 0 0 0 2 Nucleus 0.500231643921431 0.500231646607305 0.72635126 5.37174726922274e-09 hm5C_site_56084 DeepMRMD:0.72635126;iRNA_m5C:5.37174726922274e-09 56085 chr19 55362708 55362708 1 + T A LUSC 55362704 + 55362684 55362724 41 TGCTGCAGGGGGCCTGGCCACTCATGGGTGAGTCCGTCCCC TGCTGCAGGGGGCCTGGCCACTCAAGGGTGAGTCCGTCCCC < 41bp 0.517161834521304 0.805105691497803 0.27816778 0.4010046 prediction 0.575887713952998 Functional Gain - KIR3DL2 ENSG00000240403 CDS Human protein_coding chr19:55362704 chr19:55362708 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_102940 0 0 0 0 1 exosome 0.500231643921093 0.500231643921091 0 0 hm5C_site_56085 DeepMRMD:0;iRNA_m5C:0 56086 chr12 108589637 108589637 1 + C A LUAD 108589633 + 108589613 108589653 41 GCCAAGCTCTGGTTCAAATTCCAGCGGTACTTCCGCCGGAA GCCAAGCTCTGGTTCAAATTCCAGAGGTACTTCCGCCGGAA < 41bp 0.382765460506039 0.787929818264976 0.8859688 0.91381633 prediction 0.575859636529951 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108589633 chr12:108589637 synonymous SNV . 0 25 hm5C_associated_SNPs_102941 0 0 0 0 0 Endoplasmic reticulum 0.500231643921108 0.500231643921097 0.0556950599999999 0 hm5C_site_56086 DeepMRMD:0.0556950599999999;iRNA_m5C:0 56087 chr8 21958174 21958174 1 + C A UCEC 21958170 + 21958150 21958190 41 CCCCACGAGGGGATCATCCACAGCCTGGTCCTGCGCAACCT CCCCACGAGGGGATCATCCACAGCATGGTCCTGCGCAACCT < 41bp 0.621989171713718 0.909913840602132 0.73300815 0.7280913 prediction 0.575849337776828 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21958170 chr8:21958174 nonsynonymous SNV 0.021 2 25 hm5C_associated_SNPs_102942 0 0 1 0 2 chromatin 0.500232466268721 0.500231859787538 0 0 hm5C_site_56087 DeepMRMD:0;iRNA_m5C:0 56088 chr8 1497568 1497568 1 + C A LUSC 1497564 + 1497544 1497584 41 TATCGGACGCCCAGCGTGCTCAACCGGCACCACCTGGGCCC TATCGGACGCCCAGCGTGCTCAACAGGCACCACCTGGGCCC < 41bp 0.613331269400061 0.901253936005612 0.14364147 0.21239701 prediction 0.5758453332111 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1497564 chr8:1497568 synonymous SNV . 0 25 hm5C_associated_SNPs_102943 0 0 0 0 0 nucleolus 0.500231643921088 0.500231643921092 0 8.88178419700125e-15 hm5C_site_56088 DeepMRMD:0;iRNA_m5C:8.88178419700125e-15 56089 chr1 161480706 161480706 1 + T A BLCA 161480702 + 161480682 161480722 41 TGCTGTAGCAGCCATTGTTGCTGCTGTAGTGGCCTTGATCT TGCTGTAGCAGCCATTGTTGCTGCAGTAGTGGCCTTGATCT < 41bp 0.53359297740455 0.821515099507754 0.21938625 0.26807293 prediction 0.575844244206408 Functional Gain - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161480702 chr1:161480706 synonymous SNV . 0 25 hm5C_associated_SNPs_102944 0 0 1 0 2 Endoplasmic reticulum 0.500231648835378 0.500231805693932 0 3.13717106958933e-07 hm5C_site_56089 DeepMRMD:0;iRNA_m5C:3.13717106958933e-07 56090 chr17 57970436 57970436 1 + C A rs556307532 57970432 + 57970412 57970452 41 GCTTCACGGAACCCTGTACGCATGCTCCTACGCTGAACTTT GCTTCACGGAACCCTGTACGCATGATCCTACGCTGAACTTT < 41bp 0.426126794220243 0.787922055420121 0.28763717 0.28253987 prediction 0.575844110840241 Functional Gain - RPS6KB1 ENSG00000108423;ENSG00000108443 upstream Human other chr17:57970432 chr17:57970436 . . 0 25 hm5C_associated_SNPs_102945 0 0 0 0 0 Ribosome 0.500232590662897 0.500240038079769 0 1.48948337448385e-05 hm5C_site_56090 DeepMRMD:0;iRNA_m5C:1.48948337448385e-05 56091 chr17 56274592 56274592 1 + C A rs577707337 56274588 + 56274568 56274608 41 ACCCCTGTCTCCTCACCAACCGCTCGGCGCGCATCCCCTGC ACCCCTGTCTCCTCACCAACCGCTAGGCGCGCATCCCCTGC < 41bp 0.371675930839527 0.787884650379456 0.048190534 0.21516588 prediction 0.575769300758912 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56274588 chr17:56274592 stopgain 0.833 0 25 hm5C_associated_SNPs_102946 0 0 0 0 1 chromatin 0.500231550875098 0.500231643921161 0 1.8609212615317e-07 hm5C_site_56091 DeepMRMD:0;iRNA_m5C:1.8609212615317e-07 56092 chr17 18392309 18392309 1 + C A UCEC 18392305 + 18392285 18392325 41 TTCTCCACGGTGCCGTTCTCCCAGCCTGTCTGTTTCCCACC TTCTCCACGGTGCCGTTCTCCCAGACTGTCTGTTTCCCACC < 41bp 0.395504650447699 0.787879246563313 0.37174785 0.39911717 prediction 0.575758493126626 Functional Gain - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18392305 chr17:18392309 nonsynonymous SNV 0.062 0 25 hm5C_associated_SNPs_102947 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56092 DeepMRMD:0;iRNA_m5C:0 56093 chr7 20451486 20451486 1 + T G rs17365581 20451484 + 20451464 20451504 41 TCCAGTGCTCAGCTTGAGACCTTGATACACGGGCCATGAGC TCCAGTGCTCAGCTTGAGACCTGGATACACGGGCCATGAGC < 41bp 0.485547351048595 0.787872569828404 0.83530474 0.6739839 prediction 0.575745139656808 Functional Gain - ITGB8 ENSG00000105855 UTR3 Human protein_coding chr7:20451484 chr7:20451486 . . 0 23 hm5C_associated_SNPs_102948 0 0 0 0 0 Nucleus 0.500231643920899 0.500231643913825 0 0 hm5C_site_56093 DeepMRMD:0;iRNA_m5C:0 56094 chr19 50932575 50932575 1 + C A rs138842113 50932571 + 50932551 50932591 41 ACCAGAAGTCTCAAGGTCGTCACCCCCCTGCCCCCCAACCG ACCAGAAGTCTCAAGGTCGTCACCACCCTGCCCCCCAACCG < 41bp 0.407666641837143 0.787868776008621 0.1395708 0.17343906 prediction 0.575737552017242 Functional Gain - SPIB ENSG00000269404 UTR3 Human protein_coding chr19:50932571 chr19:50932575 . . 0 25 hm5C_associated_SNPs_102949 0 0 0 0 0 Endoplasmic reticulum 0.500231643921046 0.500231643903706 0 0 hm5C_site_56094 DeepMRMD:0;iRNA_m5C:0 56095 chr1 158152898 158152898 1 + C A LUAD 158152894 + 158152874 158152914 41 GGGGAGGCAGCTGGCCTGTCCTGTCGGGTGAAGCACAGCAG GGGGAGGCAGCTGGCCTGTCCTGTAGGGTGAAGCACAGCAG < 41bp 0.384031350180153 0.787866084734616 0.50877917 0.801788 prediction 0.575732169469232 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152894 chr1:158152898 synonymous SNV . 0 25 hm5C_associated_SNPs_102950 0 0 0 0 1 Endoplasmic reticulum 0.500231643921208 0.500231643921092 0.58601766 0 hm5C_site_56095 DeepMRMD:0.58601766;iRNA_m5C:0 56096 chr1 241725563 241725563 1 + C A UCEC 241725559 + 241725539 241725579 41 ATCTCACCTGATGAAGAAACCTCGCTTTGATTACAGTCAGC ATCTCACCTGATGAAGAAACCTCGATTTGATTACAGTCAGC < 41bp 0.374244824055197 0.787862316499738 0.17905176 0.49810767 prediction 0.575724632999477 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241725559 chr1:241725563 synonymous SNV . 0 25 hm5C_associated_SNPs_102951 0 0 0 0 2 Nucleus 0.500230422568375 0.500231643967697 0 2.44279864491936e-06 hm5C_site_56096 DeepMRMD:0;iRNA_m5C:2.44279864491936e-06 56097 chr3 98251090 98251090 1 + T G UCEC 98251087 + 98251067 98251107 41 AGCCGAAGACTGATCGACATCTTTATCATCAATCTGGCTGC AGCCGAAGACTGATCGACATCTTGATCATCAATCTGGCTGC < 41bp 0.595222602984304 0.883076722558135 0.083524495 0.05376497 prediction 0.575708239147662 Functional Gain - GPR15 ENSG00000154165 CDS Human protein_coding chr3:98251087 chr3:98251090 nonsynonymous SNV 0.893 4 24 hm5C_associated_SNPs_102952 0 0 0 0 0 exosome 0.500231637946632 0.500231642727952 0 9.56263934703827e-09 hm5C_site_56097 DeepMRMD:0;iRNA_m5C:9.56263934703827e-09 56098 chr10 99211445 99211445 1 + C A UCEC 99211441 + 99211421 99211461 41 CTCGTAGGAACCATGCGAGGCCAGCGGAGCCTGCTGCTGGG CTCGTAGGAACCATGCGAGGCCAGAGGAGCCTGCTGCTGGG < 41bp 0.405301443820527 0.787853901730401 0.71758926 0.930196 prediction 0.575707803460802 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211441 chr10:99211445 synonymous SNV . 0 25 hm5C_associated_SNPs_102953 0 0 1 0 1 Cytosol 0.500231647333282 0.500231643923529 0.42521348 0 hm5C_site_56098 DeepMRMD:0.42521348;iRNA_m5C:0 56099 chr12 53680055 53680055 1 + C G BRCA 53680054 + 53680034 53680074 41 CTGGCCATGGGCCACCAAGCCCAGGGTCTGGATCTGCTGCA CTGGCCATGGGCCACCAAGCCGAGGGTCTGGATCTGCTGCA < 41bp 0.491828787215965 0.787842071219675 0.8785963 0.8918863 prediction 0.57568414243935 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53680054 chr12:53680055 nonsynonymous SNV 0.980 0 22 hm5C_associated_SNPs_102954 0 0 1 0 0 Nucleus 0.500231643921113 0.500231643921099 0.02658 0 hm5C_site_56099 DeepMRMD:0.02658;iRNA_m5C:0 56100 chr15 22382858 22382858 1 + C G rs149845348 22382854 + 22382834 22382874 41 ACCGCTACATCGCCATCTGCCGGCCTCTGCACTGTTCAACT ACCGCTACATCGCCATCTGCCGGCGTCTGCACTGTTCAACT < 41bp 0.506617109512989 0.794454675441991 0.24088213 0.91256917 prediction 0.575675131858003 Functional Gain - OR4N4 ENSG00000183706 CDS Human protein_coding chr15:22382854 chr15:22382858 nonsynonymous SNV 0.246 4 25 hm5C_associated_SNPs_102955 0 0 0 0 0 unknown 0.500234038568677 0.500234247232558 0.82513834 4.17327761903508e-07 hm5C_site_56100 DeepMRMD:0.82513834;iRNA_m5C:4.17327761903508e-07 56101 chrX 136649500 136649500 1 + C G LUAD 136649499 + 136649479 136649519 41 ACGCGGCCGGCGCTCAGTTTCCTAACTACAGCCCCATGAAC ACGCGGCCGGCGCTCAGTTTCGTAACTACAGCCCCATGAAC < 41bp 0.482542736088147 0.787833004343295 0.03801459 0.23878911 prediction 0.57566600868659 Functional Gain - ZIC3 ENSG00000156925 CDS Human protein_coding chrX:136649499 chrX:136649500 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_102956 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_56101 DeepMRMD:0;iRNA_m5C:0 56102 chr11 48346849 48346849 1 + T A KIRC 48346845 + 48346825 48346865 41 GTATGAGGGGAGAACCATCTCTTATGAGTGCTGCATGGCTC GTATGAGGGGAGAACCATCTCTTAAGAGTGCTGCATGGCTC < 41bp 0.516759606033112 0.80457937820529 0.07761204 0.07810229 prediction 0.575639544344356 Functional Gain - OR4C3 ENSG00000176547 CDS Human protein_coding chr11:48346845 chr11:48346849 stopgain 0.007 0 25 hm5C_associated_SNPs_102957 0 0 0 0 0 exosome 0.500231643923328 0.500231643921532 0 0 hm5C_site_56102 DeepMRMD:0;iRNA_m5C:0 56103 chr19 58991585 58991585 1 + C A rs112871920 58991581 + 58991561 58991601 41 CACCTGGCTGCCCAGAGGCCCAGCCGCCCCAGGGCCCAGGG CACCTGGCTGCCCAGAGGCCCAGCAGCCCCAGGGCCCAGGG < 41bp 0.592599829398917 0.880418160211369 0.44101748 0.6497821 prediction 0.575636661624905 Functional Gain - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58991581 chr19:58991585 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_102958 0 0 0 0 1 nucleolus 0.500231643921092 0.500231643921092 0.2995642 0 hm5C_site_56103 DeepMRMD:0.2995642;iRNA_m5C:0 56104 chr9 120475977 120475977 1 + T A BRCA 120475973 + 120475953 120475993 41 TTAACTCACTCTCCAGTCTTCAGGTACTAAATATGAGCCAC TTAACTCACTCTCCAGTCTTCAGGAACTAAATATGAGCCAC < 41bp 0.500889945657725 0.788688206272188 0.8328363 0.8589269 prediction 0.575596521228927 Functional Gain - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120475973 chr9:120475977 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_102959 0 0 1 0 0 cytosol 0.500231643917124 0.500231644005985 0.0521812000000001 1.77721171112921e-10 hm5C_site_56104 DeepMRMD:0.0521812000000001;iRNA_m5C:1.77721171112921e-10 56105 chr1 28864616 28864616 1 + C A rs577542748 28864612 + 28864592 28864632 41 GATGGCAGCGGGCCTCTCCCCAGCCCTGAGCACTGTGTCAG GATGGCAGCGGGCCTCTCCCCAGCACTGAGCACTGTGTCAG < 41bp 0.606555816700978 0.894352116098055 0.37803453 0.37926722 prediction 0.575592598794154 Functional Gain - RCC1 ENSG00000180198 UTR3 Human protein_coding chr1:28864612 chr1:28864616 . . 0 25 hm5C_associated_SNPs_102960 0 0 1 2 0 Ribosome 0.50023164391885 0.500231643923876 0 1.00508490419315e-11 hm5C_site_56105 DeepMRMD:0;iRNA_m5C:1.00508490419315e-11 56106 chr16 28943864 28943864 1 + C A LUSC 28943860 + 28943840 28943880 41 TCTCAACAGATGGGGGGCTTCTACCTGTGCCAGCCGGGGCC TCTCAACAGATGGGGGGCTTCTACATGTGCCAGCCGGGGCC < 41bp 0.626093215332049 0.913848629771967 0.30409056 0.9449487 prediction 0.575510828879836 Functional Gain - CD19 ENSG00000177455 CDS Human protein_coding chr16:28943860 chr16:28943864 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_102961 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.8898974 0 hm5C_site_56106 DeepMRMD:0.8898974;iRNA_m5C:0 Pulmonary function phenotypes 56107 chr3 142523415 142523415 1 + T G LUSC 142523412 + 142523392 142523432 41 TGCTATATGATTAGTAGCCTCAGTAAGTGGATTTGCTCTCA TGCTATATGATTAGTAGCCTCAGGAAGTGGATTTGCTCTCA < 41bp 0.589584726478248 0.877317265698401 0.155253 0.86207604 prediction 0.575465078440307 Functional Gain - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142523412 chr3:142523415 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_102962 0 0 0 0 1 Ribosome 0.500231643915234 0.500239190617377 0.72415208 1.50934042848494e-05 hm5C_site_56107 DeepMRMD:0.72415208;iRNA_m5C:1.50934042848494e-05 56108 chr14 20389194 20389194 1 + C A UCEC 20389190 + 20389170 20389210 41 CATGAGCCGAAGGACATGCACTGTCTTGGTAATGATCTCCT CATGAGCCGAAGGACATGCACTGTATTGGTAATGATCTCCT < 41bp 0.401258615990637 0.787730737168611 0.046731383 0.05734402 prediction 0.575461474337221 Functional Gain - OR4K5 ENSG00000176281 CDS Human protein_coding chr14:20389190 chr14:20389194 synonymous SNV . 0 25 hm5C_associated_SNPs_102963 0 0 0 0 0 unknown 0.500231643929578 0.500231643922203 0 0 hm5C_site_56108 DeepMRMD:0;iRNA_m5C:0 56109 chr19 40006268 40006268 1 + C G UCEC 40006267 + 40006247 40006287 41 CAGGGATTCGGGCCGCGCTCCCCGTCTTGGACTCCTACCTG CAGGGATTCGGGCCGCGCTCCGCGTCTTGGACTCCTACCTG < 41bp 0.497192510655661 0.787717329958098 0.21610752 0.64089245 prediction 0.575434659916195 Functional Gain - SELENOV ENSG00000186838 CDS Human protein_coding chr19:40006267 chr19:40006268 nonsynonymous SNV 0.003 2 22 hm5C_associated_SNPs_102964 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0.2817849 2.22044604925031e-16 hm5C_site_56109 DeepMRMD:0.2817849;iRNA_m5C:2.22044604925031e-16 56110 chr18 74963084 74963084 1 + C A LUAD 74963080 + 74963060 74963100 41 TTCTGCTGGGAGCAGTGGCCCGACCCTCGCCACAAGAAGGC TTCTGCTGGGAGCAGTGGCCCGACACTCGCCACAAGAAGGC < 41bp 0.391799199026815 0.787683492116788 0.12683111 0.16717932 prediction 0.575366984233576 Functional Gain - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74963080 chr18:74963084 nonsynonymous SNV 0.831 0 25 hm5C_associated_SNPs_102965 0 0 0 0 1 exosome 0.500231643921502 0.500238378975691 0 1.34701083776001e-05 hm5C_site_56110 DeepMRMD:0;iRNA_m5C:1.34701083776001e-05 56111 chr6 351192 351192 1 + C A rs547349236 351188 + 351168 351208 41 CTGTGAACGCCTCCCAAGGACGAGCCCAGTGTAGTTGTGTG CTGTGAACGCCTCCCAAGGACGAGACCAGTGTAGTTGTGTG < 41bp 0.488134663970252 0.787679031145114 0.15879875 0.20850247 prediction 0.575358062290227 Functional Gain - DUSP22 ENSG00000112679 UTR3 Human protein_coding chr6:351188 chr6:351192 . . 0 25 hm5C_associated_SNPs_102966 0 0 1 0 0 Ribosome 0.500231641519586 0.500230829964028 0 0 hm5C_site_56111 DeepMRMD:0;iRNA_m5C:0 56112 chr19 55333048 55333048 1 + C A LUAD 55333044 + 55333024 55333064 41 ATATGAGAAACCTTCTCTCTCAGCCCAGCCGGGCCCCAAGG ATATGAGAAACCTTCTCTCTCAGCACAGCCGGGCCCCAAGG < 41bp 0.396321583755031 0.787665540563293 0.8604656 0.63176763 prediction 0.575331081126585 Functional Gain - KIR3DL1 ENSG00000167633 CDS Human protein_coding chr19:55333044 chr19:55333048 synonymous SNV . 0 25 hm5C_associated_SNPs_102967 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56112 DeepMRMD:0;iRNA_m5C:0 56113 chr10 26506850 26506850 1 + C A LUAD 26506846 + 26506826 26506866 41 GCGGGCCGCCGCCCGGAAGGCCGCCTGCGCCTGCGACCAGA GCGGGCCGCCGCCCGGAAGGCCGCATGCGCCTGCGACCAGA < 41bp 0.617625767257975 0.905285182578818 0.11722079 0.17707825 prediction 0.575318830641687 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26506846 chr10:26506850 synonymous SNV . 0 25 hm5C_associated_SNPs_102968 0 0 0 0 2 exosome 0.500231642477676 0.50023136025735 0 0 hm5C_site_56113 DeepMRMD:0;iRNA_m5C:0 56114 chrX 55248301 55248301 1 + T A LUAD 55248297 + 55248277 55248317 41 GATCAAAAATGAAGGAGCACCTGCTGTTCAAGGTGAAGGGA GATCAAAAATGAAGGAGCACCTGCAGTTCAAGGTGAAGGGA < 41bp 0.538577139591914 0.826233366232658 0.13215625 0.28115922 prediction 0.575312453281486 Functional Gain - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55248297 chrX:55248301 synonymous SNV . 0 25 hm5C_associated_SNPs_102969 0 0 0 0 1 exosome 0.500231640977471 0.500231597167386 0 0 hm5C_site_56114 DeepMRMD:0;iRNA_m5C:0 56115 chr8 95680343 95680343 1 + T A SKCM 95680339 + 95680319 95680359 41 CATCCTCTTTGTCACCTACCCAGATGGTAGGCCAACAGGGG CATCCTCTTTGTCACCTACCCAGAAGGTAGGCCAACAGGGG < 41bp 0.53382595586485 0.821480639265712 0.47395578 0.3403511 prediction 0.575309366801725 Functional Gain - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95680339 chr8:95680343 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_102970 0 0 0 0 0 Nucleus 0.500231643913846 0.500231643921093 0 1.44930734080617e-11 hm5C_site_56115 DeepMRMD:0;iRNA_m5C:1.44930734080617e-11 56116 chr19 50927005 50927005 1 + C G rs117090800 50927004 + 50926984 50927024 41 TGGCCCCGAGGGGAAGGGATCCGAGGCAGGTATGCGGGAGT TGGCCCCGAGGGGAAGGGATCGGAGGCAGGTATGCGGGAGT < 41bp 0.522760898843742 0.810408620196277 0.9145504 0.9395978 prediction 0.57529544270507 Functional Gain - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50927004 chr19:50927005 synonymous SNV . 0 22 hm5C_associated_SNPs_102971 0 0 0 0 1 Endoplasmic reticulum 0.50023163982681 0.500231322023245 0.0500948000000001 0 hm5C_site_56116 DeepMRMD:0.0500948000000001;iRNA_m5C:0 56117 chr2 189871100 189871100 1 + T A LUAD 189871096 + 189871076 189871116 41 TCGTGGTGAAAATGGCTCTCCTGGTGCCCCTGGCGCTCCTG TCGTGGTGAAAATGGCTCTCCTGGAGCCCCTGGCGCTCCTG < 41bp 0.523858591767204 0.8114914206696 0.7967198 0.84854966 prediction 0.575265657804793 Functional Gain - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189871096 chr2:189871100 synonymous SNV . 0 25 hm5C_associated_SNPs_102972 0 0 0 0 0 Endoplasmic reticulum 0.500231643919753 0.500231643921058 0.10365972 2.61080046470852e-12 hm5C_site_56117 DeepMRMD:0.10365972;iRNA_m5C:2.61080046470852e-12 56118 chr1 74737359 74737359 1 + C A UCEC 74737355 + 74737335 74737375 41 GGTTGGATACGGTGGCCTCACTGCCCTCCATATTGCTACAA GGTTGGATACGGTGGCCTCACTGCACTCCATATTGCTACAA < 41bp 0.624659867311253 0.912289504572322 0.10154781 0.16818288 prediction 0.575259274522138 Functional Gain - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74737355 chr1:74737359 synonymous SNV . 0 25 hm5C_associated_SNPs_102973 0 0 0 0 2 unknown 0.500231643921209 0.500231643921114 0 0 hm5C_site_56118 DeepMRMD:0;iRNA_m5C:0 56119 chr5 10256161 10256161 1 + T A rs1042392 10256157 + 10256137 10256177 41 CGATGGCTATGAGCAGGCTGCTCGTGTTGCTATTGAACACC CGATGGCTATGAGCAGGCTGCTCGAGTTGCTATTGAACACC < 41bp 0.551174819737981 0.838803010327396 0.16965804 0.31038547 prediction 0.575256381178831 Functional Gain - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10256157 chr5:10256161 synonymous SNV . 0 25 hm5C_associated_SNPs_102974 0 0 1 0 1 Cytosol 0.500242926558217 0.500232051126291 0 0 hm5C_site_56119 DeepMRMD:0;iRNA_m5C:0 56120 chr15 79603747 79603747 1 + C G LUSC 79603746 + 79603726 79603766 41 GGAGCAGGGCGTGAAGTTCTCCCTGGATTACCAGGTGAGGC GGAGCAGGGCGTGAAGTTCTCGCTGGATTACCAGGTGAGGC < 41bp 0.507775745317802 0.795403642765582 0.08158517 0.13980046 prediction 0.57525579489556 Functional Gain - TMED3 ENSG00000166557 CDS Human protein_coding chr15:79603746 chr15:79603747 synonymous SNV . 0 22 hm5C_associated_SNPs_102975 0 0 1 2 1 Ribosome 0.500231643921216 0.500231643532498 0 0 hm5C_site_56120 DeepMRMD:0;iRNA_m5C:0 56121 chr3 52816058 52816058 1 + C A LUAD 52816054 + 52816034 52816074 41 TTCAAGGTGACCTACGATGTCAGTCGAGACAAGATCTGCGA TTCAAGGTGACCTACGATGTCAGTAGAGACAAGATCTGCGA < 41bp 0.384210689978254 0.787625375404404 0.25727612 0.34133035 prediction 0.575250750808807 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52816054 chr3:52816058 synonymous SNV . 0 25 hm5C_associated_SNPs_102976 0 0 0 0 1 Endoplasmic reticulum 0.500231364985016 0.500231649472894 0 5.68975756287671e-07 hm5C_site_56121 DeepMRMD:0;iRNA_m5C:5.68975756287671e-07 56122 chr7 102065641 102065641 1 + C A rs559937833 102065637 + 102065617 102065657 41 GCGGCTGTTTGGCTCTTTCTCCCCCGCAAGGACCCGCTGAC GCGGCTGTTTGGCTCTTTCTCCCCAGCAAGGACCCGCTGAC < 41bp 0.402153101897135 0.787609736440575 0.21140614 0.20330477 prediction 0.575219472881151 Functional Gain - LOC100630923 ENSG00000128563 CDS Human protein_coding chr7:102065637 chr7:102065641 synonymous SNV . 0 25 hm5C_associated_SNPs_102977 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_56122 DeepMRMD:0;iRNA_m5C:0 56123 chr17 30615952 30615952 1 + C G LUSC 30615951 + 30615931 30615971 41 GTGGCCTATGAGACCCTGCCCCGGGAAATTGACCGCAAGTG GTGGCCTATGAGACCCTGCCCGGGGAAATTGACCGCAAGTG < 41bp 0.486591017746214 0.787579398207189 0.5936375 0.93426704 prediction 0.575158796414378 Functional Gain - RHBDL3 ENSG00000141314 CDS Human protein_coding chr17:30615951 chr17:30615952 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_102978 0 0 1 0 0 cytosol 0.500231644621608 0.500231861226457 0.68125908 4.33209697892067e-07 hm5C_site_56123 DeepMRMD:0.68125908;iRNA_m5C:4.33209697892067e-07 56124 chr3 189608606 189608606 1 + T G UCEC 189608604 + 189608584 189608624 41 AGCGAGGTTGGGCTGTTCATCATGTCTGGACTATTTCACGA AGCGAGGTTGGGCTGTTCATCAGGTCTGGACTATTTCACGA < 41bp 0.477445099451564 0.787577772179005 0.17879808 0.89995533 prediction 0.575155544358011 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189608604 chr3:189608606 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_102979 1 0 0 0 2 chromatin 0.500231640241378 0.50023164392114 0.79991066 7.35952387920236e-09 hm5C_site_56124 DeepMRMD:0.79991066;iRNA_m5C:7.35952387920236e-09 Hay-Wells syndrome of ectodermal dysplasia Hay-Wells syndrome of ectodermal dysplasia 56125 chr15 90168446 90168446 1 + C A HNSC 90168442 + 90168422 90168462 41 CCGCCTCTCCCACAGCACACCTGGCAAGAGCAGGGGGCAAA CCGCCTCTCCCACAGCACACCTGGAAAGAGCAGGGGGCAAA < 41bp 0.379988439989582 0.787576001448893 0.17792916 0.2842137 prediction 0.575152002897785 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90168442 chr15:90168446 synonymous SNV . 0 25 hm5C_associated_SNPs_102980 0 0 0 0 0 chromatin 0.500231251557559 0.500231643638111 0 7.84161103606351e-07 hm5C_site_56125 DeepMRMD:0;iRNA_m5C:7.84161103606351e-07 56126 chr19 33605316 33605316 1 + C G rs148807065 33605315 + 33605295 33605335 41 AGAGCATGCACCAGAATTATCCGCAAATCAGGTATTTGGGG AGAGCATGCACCAGAATTATCGGCAAATCAGGTATTTGGGG < 41bp 0.502705508085768 0.790273618243776 0.20093188 0.90287703 prediction 0.575136220316015 Functional Gain - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33605315 chr19:33605316 synonymous SNV . 0 22 hm5C_associated_SNPs_102981 0 0 1 0 1 Cytosol 0.500231643912285 0.500231644813941 0.80575406 1.80331283239354e-09 hm5C_site_56126 DeepMRMD:0.80575406;iRNA_m5C:1.80331283239354e-09 56127 chr5 33938115 33938115 1 + C A LUSC 33938111 + 33938091 33938131 41 CGCCCCTTCACCGCCACTACCAAGCCGGAGCACGAGGATCA CGCCCCTTCACCGCCACTACCAAGACGGAGCACGAGGATCA < 41bp 0.604445151123092 0.891993378305962 0.56050354 0.6740288 prediction 0.57509645436574 Functional Gain - RXFP3 ENSG00000182631 CDS Human protein_coding chr5:33938111 chr5:33938115 nonsynonymous SNV 0.880 1 25 hm5C_associated_SNPs_102982 0 0 0 0 0 unknown 0.500231643921092 0.500231643921089 0.22705052 0 hm5C_site_56127 DeepMRMD:0.22705052;iRNA_m5C:0 56128 chr17 48618243 48618243 1 + C G rs145595403 48618242 + 48618222 48618262 41 CCCTCAGGAACCGTCCTGTCCCGAAGCCAGCCCTGGGATCT CCCTCAGGAACCGTCCTGTCCGGAAGCCAGCCCTGGGATCT < 41bp 0.532894119088717 0.820440896609505 0.64834785 0.57392204 prediction 0.575093555041575 Functional Gain - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48618242 chr17:48618243 nonsynonymous SNV 0.978 0 22 hm5C_associated_SNPs_102983 0 0 0 0 1 Nucleus 0.500231643921089 0.500231643921092 0 6.43929354282591e-15 hm5C_site_56128 DeepMRMD:0;iRNA_m5C:6.43929354282591e-15 56129 chr15 76019849 76019849 1 + C A UCEC 76019845 + 76019825 76019865 41 ATGGGCATCAAGCACTCACTCCACCTGTGCCCACTGGTCAT ATGGGCATCAAGCACTCACTCCACATGTGCCCACTGGTCAT < 41bp 0.391835137136144 0.787542163219225 0.02600038 0.039046973 prediction 0.575084326438449 Functional Gain - ODF3L1 ENSG00000182950 CDS Human protein_coding chr15:76019845 chr15:76019849 nonsynonymous SNV 0.753 4 25 hm5C_associated_SNPs_102984 0 0 0 0 0 exosome 0.500231643919197 0.500231729302068 0 1.70765740659107e-07 hm5C_site_56129 DeepMRMD:0;iRNA_m5C:1.70765740659107e-07 56130 chr12 121426788 121426788 1 + C A SKCM 121426784 + 121426764 121426804 41 CTCCCATGAAGACGCAGAAGCGGGCCGCCCTGTACACCTGG CTCCCATGAAGACGCAGAAGCGGGACGCCCTGTACACCTGG < 41bp 0.605252218240569 0.892782960411163 0.89098585 0.9020158 prediction 0.575061484341187 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121426784 chr12:121426788 nonsynonymous SNV 0.984 5 25 hm5C_associated_SNPs_102985 0 0 0 0 0 cytosol 0.500231643921093 0.500231425212631 0.0220599000000001 0 hm5C_site_56130 DeepMRMD:0.0220599000000001;iRNA_m5C:0 56131 chr14 23982470 23982470 1 + C A rs534173879 23982466 + 23982446 23982486 41 GGGCCATCGTCTGCCTCCATCACCCCTCCGCCCGCCCGCCT GGGCCATCGTCTGCCTCCATCACCACTCCGCCCGCCCGCCT < 41bp 0.442220273320196 0.787525246732598 0.08047491 0.14567778 prediction 0.575050493465196 Functional Gain - NGDN;ZFHX2 ENSG00000157306 ncRNA_exonic Human processed_transcript chr14:23982466 chr14:23982470 . . 0 25 hm5C_associated_SNPs_102986 0 0 1 0 2 unknown 0.50023163114332 0.500231641418667 0 2.05506942574374e-08 hm5C_site_56131 DeepMRMD:0;iRNA_m5C:2.05506942574374e-08 56132 chr9 26117204 26117204 1 + C A rs115678873 26117200 + 26117180 26117220 41 CACATCAAAGATTCTTCACTCGAGCTTTGCAAAGAAGAGAA CACATCAAAGATTCTTCACTCGAGATTTGCAAAGAAGAGAA < 41bp 0.573393210629037 0.860892849999841 0.37466928 0.5525178 prediction 0.574999278741609 Functional Gain - LOC100506422 ENSG00000270683;ENSG00000266429 intergenic Human other chr9:26117200 chr9:26117204 . . 0 25 hm5C_associated_SNPs_102987 0 0 0 0 0 unknown 0.500231643711347 0.500231643398124 0.1050356 0 hm5C_site_56132 DeepMRMD:0.1050356;iRNA_m5C:0 56133 chr11 4566964 4566964 1 + T A COAD 4566960 + 4566940 4566980 41 ACCCATGTTATCTCCCACTCCTACTGTGAGCACATGGCTGT ACCCATGTTATCTCCCACTCCTACAGTGAGCACATGGCTGT < 41bp 0.55003104420593 0.837514644502264 0.043108106 0.21065328 prediction 0.574967200592669 Functional Gain - OR52M1 ENSG00000197790 CDS Human protein_coding chr11:4566960 chr11:4566964 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_102988 0 0 0 0 0 unknown 0.500231643916703 0.500231643913879 0 0 hm5C_site_56133 DeepMRMD:0;iRNA_m5C:0 56134 chr16 1412245 1412245 1 + T A rs147109185 1412241 + 1412221 1412261 41 TGGAAAAAGCAACCGGCTGGCCCATGTGTCCGAGCCGAGCA TGGAAAAAGCAACCGGCTGGCCCAAGTGTCCGAGCCGAGCA < 41bp 0.478228516007597 0.787481398173243 0.01765725 0.016095221 prediction 0.574962796346486 Functional Gain - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412241 chr16:1412245 nonsynonymous SNV 0.959 1 25 hm5C_associated_SNPs_102989 0 0 1 0 2 Ribosome 0.500231643921096 0.500231643921092 0 0 hm5C_site_56134 DeepMRMD:0;iRNA_m5C:0 56135 chr4 189060954 189060954 1 + T A SKCM 189060950 + 189060930 189060970 41 GGCTGGCCAGCATCGCCAGGCAGCTCCGGTCCCAGGTGCTG GGCTGGCCAGCATCGCCAGGCAGCACCGGTCCCAGGTGCTG < 41bp 0.517164195493099 0.804642807978189 0.44532418 0.35976183 prediction 0.57495722497018 Functional Gain - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189060950 chr4:189060954 nonsynonymous SNV 0.022 2 25 hm5C_associated_SNPs_102990 0 0 0 0 0 nucleus 0.500231643919886 0.500231643919602 0 0 hm5C_site_56135 DeepMRMD:0;iRNA_m5C:0 56136 chr11 76507531 76507531 1 + C G LUSC 76507530 + 76507510 76507550 41 CTGGACCTTTCGGGCACCAACCTGGTGCCCCTGCCTGAGGC CTGGACCTTTCGGGCACCAACGTGGTGCCCCTGCCTGAGGC < 41bp 0.533111342742736 0.820587697470807 0.52848744 0.93232465 prediction 0.574952709456141 Functional Gain - TSKU ENSG00000182704 CDS Human protein_coding chr11:76507530 chr11:76507531 nonsynonymous SNV 0.017 1 22 hm5C_associated_SNPs_102991 0 0 1 0 0 Endoplasmic reticulum 0.500231643921089 0.500231643921067 0.80767442 0 hm5C_site_56136 DeepMRMD:0.80767442;iRNA_m5C:0 56137 chr7 150069006 150069006 1 + C G rs200191877 150069005 + 150068985 150069025 41 CGCCCCGCGGTGACCGCCCCCCGGCCCGGTGGAGATGCCGT CGCCCCGCGGTGACCGCCCCCGGGCCCGGTGGAGATGCCGT < 41bp 0.499087557650058 0.787470352824559 0.12713078 0.8070516 prediction 0.574940705649118 Functional Gain - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150069005 chr7:150069006 nonsynonymous SNV 0.355 0 22 hm5C_associated_SNPs_102992 0 0 1 0 0 Endoplasmic reticulum 0.5002318579435 0.500231644099339 0.6141032 0 hm5C_site_56137 DeepMRMD:0.6141032;iRNA_m5C:0 56138 chr19 15662732 15662732 1 + C A rs2280434 15662728 + 15662708 15662748 41 CCCCCCAACTGGCTGAACCCCTGGCAGGCTTCCAAACTGAG CCCCCCAACTGGCTGAACCCCTGGAAGGCTTCCAAACTGAG < 41bp 0.582613837846806 0.870079294080469 0.07522106 0.2048035 prediction 0.574930912467326 Functional Gain - CYP4F22 ENSG00000171954 UTR3 Human protein_coding chr19:15662728 chr19:15662732 . . 0 25 hm5C_associated_SNPs_102993 1 0 0 0 0 exosome 0.500231643923877 0.500302478607502 0 0.000141669367249797 hm5C_site_56138 DeepMRMD:0;iRNA_m5C:0.000141669367249797 Congenital ichthyosiform erythroderma Congenital ichthyosiform erythroderma 56139 chr1 183184629 183184629 1 + T A LIHC 183184625 + 183184605 183184645 41 TGTGACAACTCCGGACGGTGCAGCTGTAAACCAGGTGTGAC TGTGACAACTCCGGACGGTGCAGCAGTAAACCAGGTGTGAC < 41bp 0.469475291341536 0.78744573451255 0.1208643 0.39766064 prediction 0.5748914690251 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183184625 chr1:183184629 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_102994 0 0 0 0 2 exosome 0.500231643940193 0.500231644753018 0 1.62564828265488e-09 hm5C_site_56139 DeepMRMD:0;iRNA_m5C:1.62564828265488e-09 56140 chr19 51738913 51738913 1 + C A LUAD 51738909 + 51738889 51738929 41 GGGCAGGAATGACACCCACCCTACCACAGGGTCAGCCTCCC GGGCAGGAATGACACCCACCCTACAACAGGGTCAGCCTCCC < 41bp 0.370715991023608 0.787439421059543 0.018360436 0.85996 prediction 0.574878842119087 Functional Gain - CD33 ENSG00000105383 CDS Human protein_coding chr19:51738909 chr19:51738913 synonymous SNV . 0 25 hm5C_associated_SNPs_102995 0 0 0 0 1 exosome 0.500231643921092 0.50023164396213 0.71992 8.20761236752787e-11 hm5C_site_56140 DeepMRMD:0.71992;iRNA_m5C:8.20761236752787e-11 56141 chr11 55563282 55563282 1 + T A LUSC 55563278 + 55563258 55563298 41 CTTCCATTGTCACTCCCAAGCTGCTTGAGAACTTGGTAATG CTTCCATTGTCACTCCCAAGCTGCATGAGAACTTGGTAATG < 41bp 0.519732715249808 0.807158634980334 0.045561075 0.10078934 prediction 0.57485183946105 Functional Gain - OR5D14 ENSG00000186113 CDS Human protein_coding chr11:55563278 chr11:55563282 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_102996 0 0 0 0 0 unknown 0.500231643682516 0.500231626834659 0 0 hm5C_site_56141 DeepMRMD:0;iRNA_m5C:0 56142 chr4 147561225 147561225 1 + C A COAD 147561221 + 147561201 147561241 41 ATCGGTGCCCATCTCGCACCCTTCCGCGTTGGCGGGCACGC ATCGGTGCCCATCTCGCACCCTTCAGCGTTGGCGGGCACGC < 41bp 0.383591893097249 0.787401394007127 0.08023289 0.09558356 prediction 0.574802788014253 Functional Gain - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147561221 chr4:147561225 synonymous SNV . 0 25 hm5C_associated_SNPs_102997 0 0 0 0 0 unknown 0.500231643921092 0.500231643922014 0 1.84230408706298e-12 hm5C_site_56142 DeepMRMD:0;iRNA_m5C:1.84230408706298e-12 56143 chr6 25770337 25770337 1 + C G LUSC 25770336 + 25770316 25770356 41 CCTGAAATCCAGGGAATCATCCTCAGCTCCCTCAACTATGG CCTGAAATCCAGGGAATCATCGTCAGCTCCCTCAACTATGG < 41bp 0.487653331713774 0.787399533456512 0.04981172 0.18462285 prediction 0.574799066913024 Functional Gain - SLC17A4 ENSG00000146039 CDS Human protein_coding chr6:25770336 chr6:25770337 nonsynonymous SNV 0.979 4 22 hm5C_associated_SNPs_102998 0 0 0 0 1 exosome 0.500231643921089 0.500231643921092 0 6.43929354282591e-15 hm5C_site_56143 DeepMRMD:0;iRNA_m5C:6.43929354282591e-15 56144 chr1 155152292 155152292 1 + T G UCEC 155152289 + 155152269 155152309 41 CGGGAGGAGGTGAGGGGCACCAGTGCCCTGCTTGAGAACCC CGGGAGGAGGTGAGGGGCACCAGGGCCCTGCTTGAGAACCC < 41bp 0.591588917645393 0.878984428331416 0.44085392 0.91043943 prediction 0.574791021372045 Functional Gain - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155152289 chr1:155152292 nonsynonymous SNV 0.988 3 24 hm5C_associated_SNPs_102999 0 0 0 0 0 nucleolus 0.500231682037362 0.500231643814413 0.82087886 0 hm5C_site_56144 DeepMRMD:0.82087886;iRNA_m5C:0 56145 chr1 177250558 177250558 1 + T A OV 177250554 + 177250534 177250574 41 TCTCCTGCTTGCTCCGGCATCGGCTTAAGCTGGCCAACAAT TCTCCTGCTTGCTCCGGCATCGGCATAAGCTGGCCAACAAT < 41bp 0.538270523855115 0.825665339154499 0.7142679 0.9112244 prediction 0.574789630598768 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177250554 chr1:177250558 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103000 0 0 0 0 0 Nucleus 0.500231643921152 0.500231644046143 0.393913 2.49981146893674e-10 hm5C_site_56145 DeepMRMD:0.393913;iRNA_m5C:2.49981146893674e-10 56146 chr17 33454100 33454100 1 + T A rs541247303 33454096 + 33454076 33454116 41 AGAGGATTCAGACTGCAGCTCTGATGAGACCAGCATCTCTG AGAGGATTCAGACTGCAGCTCTGAAGAGACCAGCATCTCTG < 41bp 0.469626727944013 0.787383891536786 0.15458232 0.14175245 prediction 0.574767783073572 Functional Gain - FNDC8 ENSG00000073598 CDS Human protein_coding chr17:33454096 chr17:33454100 nonsynonymous SNV 0.462 2 25 hm5C_associated_SNPs_103001 0 0 0 0 1 exosome 0.500229991765408 0.500232197945799 0 4.41236078163598e-06 hm5C_site_56146 DeepMRMD:0;iRNA_m5C:4.41236078163598e-06 56147 chr8 125990004 125990004 1 + C A rs75150612 125990000 + 125989980 125990020 41 CGTAGAAAAGCCTTTTGAGTCTCCCGACGTTGGGGATTTTC CGTAGAAAAGCCTTTTGAGTCTCCAGACGTTGGGGATTTTC < 41bp 0.382669330676817 0.787383115680992 0.039042473 0.9388118 prediction 0.574766231361985 Functional Gain - ZNF572 ENSG00000180938 CDS Human protein_coding chr8:125990000 chr8:125990004 synonymous SNV . 0 25 hm5C_associated_SNPs_103002 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0.8776236 0 hm5C_site_56147 DeepMRMD:0.8776236;iRNA_m5C:0 56148 chr8 42179668 42179668 1 + T A UCEC 42179664 + 42179644 42179684 41 AAGTGCGAGTGATCTATACGCAGCTCAGGTATGAGCCCCGA AAGTGCGAGTGATCTATACGCAGCACAGGTATGAGCCCCGA < 41bp 0.486116354973312 0.787372038015702 0.27244937 0.22342885 prediction 0.574744076031404 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179664 chr8:42179668 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_103003 0 0 1 0 2 Nucleus 0.500231643927257 0.500231643921079 0 0 hm5C_site_56148 DeepMRMD:0;iRNA_m5C:0 56149 chr19 8117950 8117950 1 + T A LIHC 8117946 + 8117926 8117966 41 CCTGCAGCATGAACCTGTGGCTCCTGGCCTGCCTGGTGGCC CCTGCAGCATGAACCTGTGGCTCCAGGCCTGCCTGGTGGCC < 41bp 0.555416882441829 0.842786472000492 0.07596293 0.9101455 prediction 0.574739179117326 Functional Gain - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8117946 chr19:8117950 nonsynonymous SNV 0.842 3 25 hm5C_associated_SNPs_103004 0 0 0 0 1 Cytosol 0.500231624892897 0.500229577047695 0.820291 0 hm5C_site_56149 DeepMRMD:0.820291;iRNA_m5C:0 56150 chr20 5297197 5297197 1 + A C rs191193149 5297200 - 5297180 5297220 41 CCCGCCTGCGCCCAACCACACTGTGACTCTCGATCCGGCTT CCCGCCTGCGCCCAACCACACTGGGACTCTCGATCCGGCTT < 41bp 0.535154429184131 0.822517155363076 0.32564855 0.8839022 prediction 0.57472545235789 Functional Gain - PROKR2 ENSG00000101292 UTR5 Human protein_coding chr20:5297200 chr20:5297197 . . 0 24 hm5C_associated_SNPs_103005 0 0 1 0 1 exosome 0.500232874741972 0.500231643980964 0.7678044 0 hm5C_site_56150 DeepMRMD:0.7678044;iRNA_m5C:0 56151 chr4 4419093 4419093 1 + C A GBM 4419089 + 4419069 4419109 41 GAGCATCACGCGCTCCGTATCGCCCTGGATGTCAGTTCTGT GAGCATCACGCGCTCCGTATCGCCATGGATGTCAGTTCTGT < 41bp 0.381044591515548 0.787360313843691 0.3236282 0.6407275 prediction 0.574720627687382 Functional Gain - NSG1 ENSG00000168824 CDS Human protein_coding chr4:4419089 chr4:4419093 synonymous SNV . 0 25 hm5C_associated_SNPs_103006 0 0 0 0 0 exosome 0.500231639032664 0.500232193017933 0.281455 1.10797053776146e-06 hm5C_site_56151 DeepMRMD:0.281455;iRNA_m5C:1.10797053776146e-06 56152 chr15 81429058 81429058 1 + C G LUAD 81429057 + 81429037 81429077 41 AGCGCAGTTCAAGCCAAGACCCCAATTGGCAGAAACACTTT AGCGCAGTTCAAGCCAAGACCGCAATTGGCAGAAACACTTT < 41bp 0.507090279065141 0.794424516153127 0.037210435 0.0805842 prediction 0.574668474175972 Functional Gain - CFAP161 ENSG00000156206 CDS Human protein_coding chr15:81429057 chr15:81429058 nonsynonymous SNV 0.004 4 22 hm5C_associated_SNPs_103007 0 0 0 0 1 chromatin 0.500231408775422 0.5002295036369 0 0 hm5C_site_56152 DeepMRMD:0;iRNA_m5C:0 56153 chr3 46658712 46658712 1 + C A rs186252375 46658708 + 46658688 46658728 41 TACACCCGTCGGGAGGTCTTCTGCCGGAACACCTGCCATGA TACACCCGTCGGGAGGTCTTCTGCAGGAACACCTGCCATGA < 41bp 0.599930100680733 0.887263881419516 0.23944566 0.2169618 prediction 0.574667561477566 Functional Gain - FAM240A ENSG00000241186;ENSG00000256354 intergenic Human other chr3:46658708 chr3:46658712 . . 0 25 hm5C_associated_SNPs_103008 0 0 0 0 1 unknown 0.500231643921099 0.500231643921092 0 0 hm5C_site_56153 DeepMRMD:0;iRNA_m5C:0 56154 chr10 133769848 133769848 1 + C A rs7199 133769844 + 133769824 133769864 41 CTCCAACTTTCCCTCTTTCTCTGCCATCACACTTGGGCCTT CTCCAACTTTCCCTCTTTCTCTGCAATCACACTTGGGCCTT < 41bp 0.5978504966403 0.885183156571447 0.4474714 0.79891896 prediction 0.574665319862296 Functional Gain - PPP2R2D ENSG00000175470 UTR3 Human protein_coding chr10:133769844 chr10:133769848 . . 0 25 hm5C_associated_SNPs_103009 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921069 0.59783792 0 hm5C_site_56154 DeepMRMD:0.59783792;iRNA_m5C:0 56155 chr14 96730863 96730863 1 + C G rs145322761 96730862 + 96730842 96730882 41 TTATTCCAGGTGCAAGCAGTCCGAGGCTGCTTTTGGGAGGA TTATTCCAGGTGCAAGCAGTCGGAGGCTGCTTTTGGGAGGA < 41bp 0.522903375737542 0.810210967515475 0.7752944 0.92541564 prediction 0.574615183555865 Functional Gain - BDKRB1 ENSG00000100739 CDS Human protein_coding chr14:96730862 chr14:96730863 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_103010 0 0 0 0 0 nucleus 0.500231645431499 0.500231643921087 0.30024248 0 hm5C_site_56155 DeepMRMD:0.30024248;iRNA_m5C:0 56156 chr16 30593997 30593997 1 + T A HNSC 30593993 + 30593973 30594013 41 CCACGGCCTGCTGCCACGCGCGCCTCTCGCTGCAGGAGCGG CCACGGCCTGCTGCCACGCGCGCCACTCGCTGCAGGAGCGG < 41bp 0.509870768267089 0.797166479675849 0.026808798 0.0285739 prediction 0.574591422817521 Functional Gain - ZNF785 ENSG00000197162 CDS Human protein_coding chr16:30593993 chr16:30593997 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_103011 0 0 0 0 0 Nucleus 0.500231644646215 0.500231625202132 0 0 hm5C_site_56156 DeepMRMD:0;iRNA_m5C:0 56157 chr2 95947105 95947105 1 + C A UCEC 95947101 + 95947081 95947121 41 TGCCAGAGCTGGGAGAACGGCGAGCTCTTTGAGGTAGGCCT TGCCAGAGCTGGGAGAACGGCGAGATCTTTGAGGTAGGCCT < 41bp 0.400077504659373 0.787290548811438 0.6519464 0.77461755 prediction 0.574581097622876 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95947101 chr2:95947105 nonsynonymous SNV 0.272 0 25 hm5C_associated_SNPs_103012 0 0 0 0 1 Ribosome 0.500231645830487 0.500231642591696 0.2453423 0 hm5C_site_56157 DeepMRMD:0.2453423;iRNA_m5C:0 56158 chr15 31093586 31093586 1 + C A rs138754909 31093582 + 31093562 31093602 41 CCCAGCGTCTGAGCCCTGTCCTCCCGCAGGAAAATCCATCA CCCAGCGTCTGAGCCCTGTCCTCCAGCAGGAAAATCCATCA < 41bp 0.592766983545897 0.880054530305236 0.05313617 0.9248216 prediction 0.574575093518678 Functional Gain - LOC100288637;HERC2P10 ENSG00000221379 ncRNA_exonic Human other chr15:31093582 chr15:31093586 . . 0 25 hm5C_associated_SNPs_103013 0 0 0 0 0 unknown 0.500231285341828 0.500231643921504 0.8496432 7.17159351015795e-07 hm5C_site_56158 DeepMRMD:0.8496432;iRNA_m5C:7.17159351015795e-07 56159 chrX 99854535 99854535 1 + C A HNSC 99854531 + 99854511 99854551 41 AATGGAATAGAATTTGATCCCATGCTGGATGAGAGAGGTTA AATGGAATAGAATTTGATCCCATGATGGATGAGAGAGGTTA < 41bp 0.459210515503196 0.787283121418017 0.040518224 0.06718895 prediction 0.574566242836035 Functional Gain - TNMD ENSG00000000005 CDS Human protein_coding chrX:99854531 chrX:99854535 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_103014 0 0 0 0 1 exosome 0.50023164391808 0.500231643611618 0 0 hm5C_site_56159 DeepMRMD:0;iRNA_m5C:0 56160 chr11 44102794 44102794 1 + C A rs3213455 44102790 + 44102770 44102810 41 AGAAAACCAGGATGTGGCCACTGCCGTGGCTTCCCTCTGCC AGAAAACCAGGATGTGGCCACTGCAGTGGCTTCCCTCTGCC < 41bp 0.394678005072058 0.787276132288317 0.13000035 0.8157567 prediction 0.574552264576634 Functional Gain - ACCS ENSG00000110455 CDS Human protein_coding chr11:44102790 chr11:44102794 synonymous SNV . 0 25 hm5C_associated_SNPs_103015 0 0 0 0 2 chromatin 0.500231643921093 0.50023164392115 0.6315134 1.15019105351166e-13 hm5C_site_56160 DeepMRMD:0.6315134;iRNA_m5C:1.15019105351166e-13 56161 chr1 248652008 248652008 1 + T G SKCM 248652006 + 248651986 248652026 41 GTGGTCATCTTTGTGGTTTTCCTGAAGGCGTTGTCTGGAAA GTGGTCATCTTTGTGGTTTTCCGGAAGGCGTTGTCTGGAAA < 41bp 0.549005944738456 0.836270847737478 0.059661686 0.3614816 prediction 0.574529805998044 Functional Gain - OR2T5 ENSG00000203661 CDS Human protein_coding chr1:248652006 chr1:248652008 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_103016 0 0 0 0 0 exosome 0.500231643560472 0.500231616318696 0 0 hm5C_site_56161 DeepMRMD:0;iRNA_m5C:0 56162 chr5 140590532 140590532 1 + T A UCEC 140590528 + 140590508 140590548 41 GCCCCGGCCCAGGCCCAGGCCGACTCGCTCACTGTCTACCT GCCCCGGCCCAGGCCCAGGCCGACACGCTCACTGTCTACCT < 41bp 0.491655834034699 0.787263002971271 0.27969956 0.39572287 prediction 0.574526005942543 Functional Gain - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140590528 chr5:140590532 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_103017 0 0 0 0 0 exosome 0.500231643921141 0.50023164392218 0 2.07922568051799e-12 hm5C_site_56162 DeepMRMD:0;iRNA_m5C:2.07922568051799e-12 56163 chr1 101705367 101705367 1 + T A LUSC 101705363 + 101705343 101705383 41 GCTGGGCACCGCTCTTCATCCTGCTCCTGCTGGATGTGGGC GCTGGGCACCGCTCTTCATCCTGCACCTGCTGGATGTGGGC < 41bp 0.558802750325298 0.846060403662935 0.06912634 0.103260905 prediction 0.574515306675273 Functional Gain - S1PR1 ENSG00000170989 CDS Human protein_coding chr1:101705363 chr1:101705367 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_103018 0 0 1 0 0 Endoplasmic reticulum 0.500231643921037 0.500231643879121 0 0 hm5C_site_56163 DeepMRMD:0;iRNA_m5C:0 56164 chr5 137426742 137426742 1 + C G HNSC 137426741 + 137426721 137426761 41 TCCCCAGGCAGTGCCCAGTCCCTGGGTAAGGGCAGTGCCTG TCCCCAGGCAGTGCCCAGTCCGTGGGTAAGGGCAGTGCCTG < 41bp 0.527103018562149 0.814358042903836 0.22158152 0.38855323 prediction 0.574510048683374 Functional Gain - WNT8A ENSG00000061492 CDS Human protein_coding chr5:137426741 chr5:137426742 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_103019 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56164 DeepMRMD:0;iRNA_m5C:0 56165 chrX 142967242 142967242 1 + C A COAD 142967238 + 142967218 142967258 41 CACAGGATCATCAAGGAAACCCAGCGTTTGCTGGCAGAGCC CACAGGATCATCAAGGAAACCCAGAGTTTGCTGGCAGAGCC < 41bp 0.593784638962192 0.88102789459322 0.078410655 0.20357803 prediction 0.574486511262055 Functional Gain - UBE2NL ENSG00000102069 CDS Human other chrX:142967238 chrX:142967242 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_103020 0 0 1 0 0 unknown 0.500231710870024 0.50023164725188 0 0 hm5C_site_56165 DeepMRMD:0;iRNA_m5C:0 56166 chr9 100616406 100616406 1 + C G rs538551156 100616405 + 100616385 100616425 41 CATGGCCATCGCGCACGCGCCCGAGCGCCGCCTCACGCTGG CATGGCCATCGCGCACGCGCCGGAGCGCCGCCTCACGCTGG < 41bp 0.532566601079478 0.819793729385983 0.059693098 0.28123567 prediction 0.574454256613011 Functional Gain - FOXE1 ENSG00000178919 CDS Human protein_coding chr9:100616405 chr9:100616406 synonymous SNV . 0 22 hm5C_associated_SNPs_103021 0 0 0 0 0 exosome 0.500231627973393 0.500231642055734 0 2.81646832522853e-08 hm5C_site_56166 DeepMRMD:0;iRNA_m5C:2.81646832522853e-08 56167 chr3 66430799 66430799 1 + A T COAD 66430803 - 66430783 66430823 41 GCGCGGAAGCCCAGTACTTGCTTGTTTCCAATGGCCACCTC GCGCGGAAGCCCAGTACTTGCTTGATTCCAATGGCCACCTC < 41bp 0.532298246558976 0.819518571804833 0.022481829 0.16307065 prediction 0.574440650491713 Functional Gain - LRIG1 ENSG00000144749 CDS Human protein_coding chr3:66430803 chr3:66430799 nonsynonymous SNV 0.291 1 25 hm5C_associated_SNPs_103022 0 0 0 0 0 Ribosome 0.500231647681843 0.500231650377442 0 5.39119859865878e-09 hm5C_site_56167 DeepMRMD:0;iRNA_m5C:5.39119859865878e-09 56168 chr7 100187937 100187937 1 + G C OV 100187938 - 100187918 100187958 41 CCAGGGCCGGACTCCAGAACCCTGATCTTGGAGGCGCGGAC CCAGGGCCGGACTCCAGAACCGTGATCTTGGAGGCGCGGAC < 41bp 0.478649777434822 0.787203026861077 0.29818848 0.72427624 prediction 0.574406053722155 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187938 chr7:100187937 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_103023 0 0 0 0 2 exosome 0.500231643927002 0.500231609884851 0.44855248 0 hm5C_site_56168 DeepMRMD:0.44855248;iRNA_m5C:0 56169 chr5 161576257 161576257 1 + T A CESC 161576253 + 161576233 161576273 41 TCTGCTCTGGTGGAGTATGGCACCTTGCATTATTTTGTCAG TCTGCTCTGGTGGAGTATGGCACCATGCATTATTTTGTCAG < 41bp 0.459003373779408 0.787194109566809 0.2285186 0.27509156 prediction 0.574388219133618 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161576253 chr5:161576257 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_103024 0 0 0 0 1 exosome 0.500231643224487 0.500231598170142 0 0 hm5C_site_56169 DeepMRMD:0;iRNA_m5C:0 56170 chr16 56782311 56782311 1 + C A rs573467287 56782307 + 56782287 56782327 41 TGCGTTCCCGTACCCTAACACGCACGTCCCAGGAGACGGCA TGCGTTCCCGTACCCTAACACGCAAGTCCCAGGAGACGGCA < 41bp 0.39265856171506 0.787192771560695 0.18032372 0.16296232 prediction 0.57438554312139 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56782307 chr16:56782311 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_103025 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_56170 DeepMRMD:0;iRNA_m5C:0 56171 chr16 22826281 22826281 1 + C A LUAD 22826277 + 22826257 22826297 41 TGGGTACCAAGCGGTTGCCCCAAGCCCTCATTGTGGGCGTG TGGGTACCAAGCGGTTGCCCCAAGACCTCATTGTGGGCGTG < 41bp 0.407915424324751 0.787176948208763 0.86880535 0.8461874 prediction 0.574353896417527 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22826277 chr16:22826281 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_103026 0 0 0 1 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56171 DeepMRMD:0;iRNA_m5C:0 56172 chr2 233322328 233322328 1 + T G STAD 233322326 + 233322306 233322346 41 TTCCCATGGGGACCCCAGACCCTGAGTACCCAGCTGATGCC TTCCCATGGGGACCCCAGACCCGGAGTACCCAGCTGATGCC < 41bp 0.440110260896357 0.787170510190176 0.0569849 0.87273157 prediction 0.574341020380352 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322326 chr2:233322328 synonymous SNV . 0 23 hm5C_associated_SNPs_103027 0 0 0 0 2 Cytosol 0.500231643921092 0.500231671110015 0.74546314 5.43778457817723e-08 hm5C_site_56172 DeepMRMD:0.74546314;iRNA_m5C:5.43778457817723e-08 56173 chr12 102558286 102558286 1 + C A UCEC 102558282 + 102558262 102558302 41 TAGTGAATTCAAAGAATGACCTGGCTGTGGCTTATATTCTC TAGTGAATTCAAAGAATGACCTGGATGTGGCTTATATTCTC < 41bp 0.415088834220583 0.787164442536202 0.04232171 0.084237695 prediction 0.574328885072405 Functional Gain - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102558282 chr12:102558286 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_103028 0 0 1 0 1 chromatin 0.500073401464997 0.500231644260746 0 0.000316485591496551 hm5C_site_56173 DeepMRMD:0;iRNA_m5C:0.000316485591496551 56174 chr19 14070103 14070103 1 + C A LUAD 14070099 + 14070079 14070119 41 GCGGGGTCCCTGAGGAAGCCCGGCCTGCCCTGTGCCCAGGA GCGGGGTCCCTGAGGAAGCCCGGCATGCCCTGTGCCCAGGA < 41bp 0.621416732721471 0.908575503495873 0.72095865 0.85129213 prediction 0.574317541548804 Functional Gain - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14070099 chr19:14070103 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_103029 0 0 1 0 0 Cytosol 0.500231643921092 0.500231626253627 0.26066696 0 hm5C_site_56174 DeepMRMD:0.26066696;iRNA_m5C:0 56175 chrY 3447740 3447740 1 + C A STAD 3447736 + 3447716 3447756 41 CCAAGTCAGGGCCAGTGGTCCAGACAATGTACAAAGCCTGC CCAAGTCAGGGCCAGTGGTCCAGAAAATGTACAAAGCCTGC < 41bp 0.600865805225918 0.888019338471077 0.9166274 0.91738653 prediction 0.574307066490319 Functional Gain - TGIF2LY ENSG00000176679 CDS Human protein_coding chrY:3447736 chrY:3447740 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_103030 0 0 0 0 0 unknown 0.500231643892186 0.500231643920787 0.0015182600000001 5.72026870315767e-11 hm5C_site_56175 DeepMRMD:0.0015182600000001;iRNA_m5C:5.72026870315767e-11 56176 chr1 155178615 155178615 1 + C G LUSC 155178614 + 155178594 155178634 41 ACATGCTGCTCGGGGGACCCCCCCGCAGTCCCCGCTCGGGG ACATGCTGCTCGGGGGACCCCGCCGCAGTCCCCGCTCGGGG < 41bp 0.528438982844752 0.815583630098129 0.06486392 0.3935566 prediction 0.574289294506753 Functional Gain - MTX1 ENSG00000173171 CDS Human protein_coding chr1:155178614 chr1:155178615 nonsynonymous SNV 0.825 3 22 hm5C_associated_SNPs_103031 0 0 0 0 0 Ribosome 0.500231643921097 0.500231643940476 0 3.87587739680839e-11 hm5C_site_56176 DeepMRMD:0;iRNA_m5C:3.87587739680839e-11 56177 chr15 77941003 77941003 1 + T G rs115377917 77941000 + 77940980 77941020 41 CTCAGCCTCTGGCCTGACCTCTCTGGGCCTCAGAGGCCTTG CTCAGCCTCTGGCCTGACCTCTCGGGGCCTCAGAGGCCTTG < 41bp 0.563542178367711 0.850676215856746 0.31046474 0.4813249 prediction 0.574268074978069 Functional Gain - LINGO1-AS1 ENSG00000259666 ncRNA_exonic Human antisense chr15:77941000 chr15:77941003 . . 0 24 hm5C_associated_SNPs_103032 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_56177 DeepMRMD:0;iRNA_m5C:0 56178 chr11 3428820 3428820 1 + C G rs9704721 3428816 + 3428796 3428836 41 CAGGGGTCTGGTGTCTTCTCCAGGCAGCTCTCAGGCTCCCT CAGGGGTCTGGTGTCTTCTCCAGGGAGCTCTCAGGCTCCCT < 41bp 0.499884725907801 0.787131938249179 0.91379124 0.920902 prediction 0.574263876498358 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3428816 chr11:3428820 . . 0 25 hm5C_associated_SNPs_103033 0 0 0 0 0 unknown 0.500231643755295 0.500231643921093 0.01422152 3.31594751656894e-10 hm5C_site_56178 DeepMRMD:0.01422152;iRNA_m5C:3.31594751656894e-10 56179 chr22 29706927 29706927 1 + C A rs61737776 29706923 + 29706903 29706943 41 CCTGGGAGTGAGCGCCGGGGCTCCCGGCCTGAGATGACTCC CCTGGGAGTGAGCGCCGGGGCTCCAGGCCTGAGATGACTCC < 41bp 0.375652444791335 0.787131813795322 0.17290074 0.54520696 prediction 0.574263627590643 Functional Gain - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29706923 chr22:29706927 synonymous SNV . 0 25 hm5C_associated_SNPs_103034 0 0 0 0 1 Ribosome 0.500231642997305 0.500231643923454 0.09041392 1.85229742655224e-09 hm5C_site_56179 DeepMRMD:0.09041392;iRNA_m5C:1.85229742655224e-09 56180 chr19 30934635 30934635 1 + C G OV 30934634 + 30934614 30934654 41 GAGCTCCATCCCCGGCCCAACCCCGAGGAGAAGCCCCCCGC GAGCTCCATCCCCGGCCCAACGCCGAGGAGAAGCCCCCCGC < 41bp 0.482169452854351 0.787130686588991 0.10012913 0.20387381 prediction 0.574261373177981 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934634 chr19:30934635 nonsynonymous SNV 0.814 2 22 hm5C_associated_SNPs_103035 0 0 0 0 0 exosome 0.500231643921092 0.500231643921091 0 0 hm5C_site_56180 DeepMRMD:0;iRNA_m5C:0 56181 chr16 731823 731823 1 + G T GBM 731827 - 731807 731847 41 GACGTGGCTGTCGTCCTCATCACCCTCGTGGTTTCGCTGGC GACGTGGCTGTCGTCCTCATCACCATCGTGGTTTCGCTGGC < 41bp 0.583924389700003 0.871040314492149 0.11807725 0.12510243 prediction 0.574231849584293 Functional Gain - STUB1 ENSG00000103266 CDS Human protein_coding chr16:731827 chr16:731823 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_103036 0 0 1 0 0 Endoplasmic reticulum 0.500232960209753 0.500231643805515 0 0 hm5C_site_56181 DeepMRMD:0;iRNA_m5C:0 56182 chr5 156671418 156671418 1 + T A HNSC 156671414 + 156671394 156671434 41 GACTTTTTGCTGCAGAGACCCTGCTGGGCATGTGTCTGGAT GACTTTTTGCTGCAGAGACCCTGCAGGGCATGTGTCTGGAT < 41bp 0.461172482417381 0.787111522195425 0.036992818 0.13083667 prediction 0.57422304439085 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156671414 chr5:156671418 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_103037 0 0 0 0 1 exosome 0.500231647014999 0.500231677333605 0 6.06372121403354e-08 hm5C_site_56182 DeepMRMD:0;iRNA_m5C:6.06372121403354e-08 56183 chr5 140604449 140604449 1 + C A PRAD 140604445 + 140604425 140604465 41 ACCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAA ACCTTCACCCAAACCTCCTACACCATGTTCGTCCGCGAGAA < 41bp 0.383433812678029 0.787107272133113 0.031150341 0.051077902 prediction 0.574214544266227 Functional Gain - PCDHB14 ENSG00000120327 CDS Human protein_coding chr5:140604445 chr5:140604449 nonsynonymous SNV 0.068 0 25 hm5C_associated_SNPs_103038 0 0 0 0 0 exosome 0.500231630890631 0.500231643918526 0 2.6055789748014e-08 hm5C_site_56183 DeepMRMD:0;iRNA_m5C:2.6055789748014e-08 56184 chr9 42368601 42368601 1 + C A UCEC 42368597 + 42368577 42368617 41 CGCAGGAGCGGAGACCTGGACGCCCTGGACAAGCAGCACAG CGCAGGAGCGGAGACCTGGACGCCATGGACAAGCAGCACAG < 41bp 0.602882052397401 0.889984337168436 0.14842007 0.3520953 prediction 0.574204569542069 Functional Gain - ANKRD20A2;ANKRD20A3 ENSG00000183148 CDS Human protein_coding chr9:42368597 chr9:42368601 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_103039 0 0 0 0 1 unknown 0.500231643921092 0.500231641257925 0 0 hm5C_site_56184 DeepMRMD:0;iRNA_m5C:0 56185 chr11 55111383 55111383 1 + C A LUAD 55111379 + 55111359 55111399 41 AGGAAGAGAGGCATAAAGCCCTGCCTACCTGCATCTCCCAC AGGAAGAGAGGCATAAAGCCCTGCATACCTGCATCTCCCAC < 41bp 0.611690103689443 0.89878714798335 0.15358087 0.48080105 prediction 0.574194088587815 Functional Gain - OR4A16 ENSG00000181961 CDS Human protein_coding chr11:55111379 chr11:55111383 nonsynonymous SNV 0.353 1 25 hm5C_associated_SNPs_103040 0 0 0 0 0 unknown 0.5002316439211 0.500231643921092 0 0 hm5C_site_56185 DeepMRMD:0;iRNA_m5C:0 56186 chr1 155911986 155911986 1 + C A rs201538899 155911982 + 155911962 155912002 41 ACTCTTCTGGGCCCGAATAGCCACCCTGGCAGTGTGGGCGG ACTCTTCTGGGCCCGAATAGCCACACTGGCAGTGTGGGCGG < 41bp 0.596763316334427 0.883858427560862 0.021892577 0.13499394 prediction 0.574190222452871 Functional Gain - RXFP4 ENSG00000173080 CDS Human protein_coding chr1:155911982 chr1:155911986 synonymous SNV . 0 25 hm5C_associated_SNPs_103041 0 0 0 0 0 exosome 0.50023164382571 0.500231643740467 0 0 hm5C_site_56186 DeepMRMD:0;iRNA_m5C:0 56187 chr19 1207008 1207008 1 + C G rs79175212 1207007 + 1206987 1207027 41 CATCCACCGCATCGACTCCACCGAGGTCATCTACCAGCCGC CATCCACCGCATCGACTCCACGGAGGTCATCTACCAGCCGC < 41bp 0.513228374505518 0.800322371582512 0.04217449 0.2446917 prediction 0.574187994153989 Functional Gain - STK11 ENSG00000118046 CDS Human protein_coding chr19:1207007 chr19:1207008 synonymous SNV . 0 22 hm5C_associated_SNPs_103042 3 0 1 0 0 Ribosome 0.500231633299707 0.500231348580187 0 0 hm5C_site_56187 DeepMRMD:0;iRNA_m5C:0 Peutz-Jeghers syndrome Peutz-Jeghers syndrome 56188 chr22 21822362 21822362 1 + C A rs192833477 21822358 + 21822338 21822378 41 CAGGGTGGGGTGGGGCAGGGCGGGCGGAAGGGGGCAGGATC CAGGGTGGGGTGGGGCAGGGCGGGAGGAAGGGGGCAGGATC < 41bp 0.4751577134819 0.787080185997449 0.90747154 0.9074161 prediction 0.574160371994898 Functional Gain - TMEM191C ENSG00000206140 ncRNA_exonic Human protein_coding chr22:21822358 chr22:21822362 . . 0 25 hm5C_associated_SNPs_103043 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56188 DeepMRMD:0;iRNA_m5C:0 56189 chr12 15131042 15131042 1 + C A LUSC 15131038 + 15131018 15131058 41 CAAGTTCAAGCAGAGGCAGACTCGCCAATTCAAGAGTAAAC CAAGTTCAAGCAGAGGCAGACTCGACAATTCAAGAGTAAAC < 41bp 0.381198497402179 0.787074309525292 0.13862664 0.12799492 prediction 0.574148619050584 Functional Gain - PDE6H ENSG00000139053 CDS Human protein_coding chr12:15131038 chr12:15131042 synonymous SNV . 0 25 hm5C_associated_SNPs_103044 0 0 0 0 0 exosome 0.500231643909128 0.500231644819844 0 1.82143145011082e-09 hm5C_site_56189 DeepMRMD:0;iRNA_m5C:1.82143145011082e-09 56190 chr16 84224929 84224929 1 + C G rs200340222 84224928 + 84224908 84224948 41 GATCAGCCCCCAGCCCCGCCCCTGGCGACCGCTACCCGCCC GATCAGCCCCCAGCCCCGCCCGTGGCGACCGCTACCCGCCC < 41bp 0.485923268373158 0.787069913990182 0.51114255 0.8672445 prediction 0.574139827980365 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84224928 chr16:84224929 synonymous SNV . 0 22 hm5C_associated_SNPs_103045 0 0 0 0 0 exosome 0.500231643922221 0.500231626408232 0.7122039 0 hm5C_site_56190 DeepMRMD:0.7122039;iRNA_m5C:0 56191 chr3 113003370 113003370 1 + C G BLCA 113003369 + 113003349 113003389 41 CCCTCGGCTGCAGTGGGCTACCCGGGCATGAAGCCCCAGCA CCCTCGGCTGCAGTGGGCTACGCGGGCATGAAGCCCCAGCA < 41bp 0.485038497472835 0.787057750968965 0.9163554 0.9021629 prediction 0.57411550193793 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:113003369 chr3:113003370 nonsynonymous SNV 0.004 0 22 hm5C_associated_SNPs_103046 0 0 0 0 1 nucleoplasm 0.500231643921092 0.500231645436857 0 3.03152836167442e-09 hm5C_site_56191 DeepMRMD:0;iRNA_m5C:3.03152836167442e-09 56192 chr14 74823805 74823805 1 + C G BLCA 74823804 + 74823784 74823824 41 CTCAGCCTGGAGCTGCGGGCCCGCACCGTGGTAGAGATGCT CTCAGCCTGGAGCTGCGGGCCGGCACCGTGGTAGAGATGCT < 41bp 0.486088563215279 0.787054398265792 0.12565517 0.5125647 prediction 0.574108796531583 Functional Gain - VRTN ENSG00000133980 CDS Human protein_coding chr14:74823804 chr14:74823805 nonsynonymous SNV 0.949 2 22 hm5C_associated_SNPs_103047 0 0 0 0 0 unknown 0.500231643889379 0.500231643920983 0.0251294 6.32069951933545e-11 hm5C_site_56192 DeepMRMD:0.0251294;iRNA_m5C:6.32069951933545e-11 56193 chr7 141427142 141427142 1 + A T BRCA 141427146 - 141427126 141427166 41 AACTGTATTTCTGGCCAGAGCTGCTGCAGAAGGTCTCTGTT AACTGTATTTCTGGCCAGAGCTGCAGCAGAAGGTCTCTGTT < 41bp 0.473006788631775 0.78705134380709 0.26572344 0.38329405 prediction 0.57410268761418 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141427146 chr7:141427142 synonymous SNV . 0 25 hm5C_associated_SNPs_103048 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_56193 DeepMRMD:0;iRNA_m5C:0 56194 chr19 51825355 51825355 1 + C A rs61732615 51825351 + 51825331 51825371 41 GAGCCTGGAGTTCAACTCTCCTGCCGACAACTACACAGTGT GAGCCTGGAGTTCAACTCTCCTGCAGACAACTACACAGTGT < 41bp 0.379111973257574 0.787044616274213 0.3090385 0.5061148 prediction 0.574089232548425 Functional Gain - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51825351 chr19:51825355 synonymous SNV . 0 25 hm5C_associated_SNPs_103049 0 0 0 0 2 Cytosol 0.500231667832063 0.500501068485541 0.0122296 0.000538801306954717 hm5C_site_56194 DeepMRMD:0.0122296;iRNA_m5C:0.000538801306954717 56195 chr3 9506176 9506176 1 + T G rs147128913 9506174 + 9506154 9506194 41 AGCAGAATGTCACCAAGTTACTTCGGCCTCTGTCTCCAGTC AGCAGAATGTCACCAAGTTACTGCGGCCTCTGTCTCCAGTC < 41bp 0.460816997110444 0.7870354592793 0.2569738 0.35620868 prediction 0.574070918558599 Functional Gain - SETD5 ENSG00000168137 CDS Human protein_coding chr3:9506174 chr3:9506176 synonymous SNV . 0 23 hm5C_associated_SNPs_103050 0 0 1 0 1 Nucleus 0.500231643914246 0.50023164376121 0 0 hm5C_site_56195 DeepMRMD:0;iRNA_m5C:0 56196 chr1 74664011 74664011 1 + C A LUAD 74664007 + 74663987 74664027 41 GAAGTATCGCTGCGAGAAGCCACCCAGCGAAAATTGCGGAG GAAGTATCGCTGCGAGAAGCCACCAAGCGAAAATTGCGGAG < 41bp 0.609863992034468 0.896897479735878 0.25802475 0.5924974 prediction 0.57406697540282 Functional Gain - FPGT;FPGT-TNNI3K ENSG00000116783;ENSG00000254685;ENSG00000259030 CDS Human other chr1:74664007 chr1:74664011 nonsynonymous SNV 0.958 0 25 hm5C_associated_SNPs_103051 0 0 0 0 1 unknown 0.500231643921092 0.500231643921089 0.1849948 0 hm5C_site_56196 DeepMRMD:0.1849948;iRNA_m5C:0 56197 chr11 4566811 4566811 1 + C A rs151081997 4566807 + 4566787 4566827 41 GATCGCTACGTGGCCATCTGCAACCCACTACGTCATAGCAT GATCGCTACGTGGCCATCTGCAACACACTACGTCATAGCAT < 41bp 0.409023607851656 0.787032879333796 0.41555429 0.43787512 prediction 0.574065758667592 Functional Gain - OR52M1 ENSG00000197790 CDS Human protein_coding chr11:4566807 chr11:4566811 nonsynonymous SNV 0.205 3 25 hm5C_associated_SNPs_103052 0 0 0 0 0 unknown 0.500231643541604 0.500231639120782 0 0 hm5C_site_56197 DeepMRMD:0;iRNA_m5C:0 56198 chr7 128845065 128845065 1 + T A LUAD 128845061 + 128845041 128845081 41 CAGAATGAGGTGCAGAACATCAAGTTCAACAGTTCAGGCCA CAGAATGAGGTGCAGAACATCAAGATCAACAGTTCAGGCCA < 41bp 0.533181539336556 0.820205455484554 0.3442492 0.764843 prediction 0.574047832295997 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128845061 chr7:128845065 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103053 0 0 1 0 1 cytosol 0.500230934621472 0.500231451060913 0.529686 1.03287888353343e-06 hm5C_site_56198 DeepMRMD:0.529686;iRNA_m5C:1.03287888353343e-06 56199 chr1 161138933 161138933 1 + C G rs12735723 161138932 + 161138912 161138952 41 TCAGTGTTCTCAGAGGCCAGCCGGTCTGTGGGCTCAGCCTC TCAGTGTTCTCAGAGGCCAGCGGGTCTGTGGGCTCAGCCTC < 41bp 0.479627377669623 0.787017247902098 0.80561393 0.9175999 prediction 0.574034495804196 Functional Gain - PPOX ENSG00000143224 CDS Human protein_coding chr1:161138932 chr1:161138933 nonsynonymous SNV 0.767 3 22 hm5C_associated_SNPs_103054 1 0 1 0 1 Cytosol 0.500231643926771 0.500231643921245 0.22397194 0 hm5C_site_56199 DeepMRMD:0.22397194;iRNA_m5C:0 Variegate porphyria, homozygous Variegate porphyria, homozygous 56200 chr3 10188246 10188246 1 + T A KIRC 10188242 + 10188222 10188262 41 CAGGGACACACGATGGGCTTCTGGTTAACCAAACTGAATTA CAGGGACACACGATGGGCTTCTGGATAACCAAACTGAATTA < 41bp 0.550227592102503 0.83723310282437 0.20079407 0.42158568 prediction 0.574011021443734 Functional Gain - VHL ENSG00000134086 CDS Human protein_coding chr3:10188242 chr3:10188246 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103055 0 0 1 0 2 Ribosome 0.500231649568492 0.500231652095873 0 5.05476083212386e-09 hm5C_site_56200 DeepMRMD:0;iRNA_m5C:5.05476083212386e-09 56201 chr19 56114143 56114143 1 + C A rs547982572 56114139 + 56114119 56114159 41 GGCGCCATGCGAAGCGCAAGCACCCGGAGGCCATGGGGGTA GGCGCCATGCGAAGCGCAAGCACCAGGAGGCCATGGGGGTA < 41bp 0.614826115164396 0.90182513098492 0.19183603 0.2648335 prediction 0.573998031641049 Functional Gain - ZNF524 ENSG00000171443 CDS Human protein_coding chr19:56114139 chr19:56114143 nonsynonymous SNV 0.664 3 25 hm5C_associated_SNPs_103056 0 0 0 0 0 chromatin 0.50023164411305 0.500231643921633 0 0 hm5C_site_56201 DeepMRMD:0;iRNA_m5C:0 56202 chr5 80550975 80550975 1 + C A LUSC 80550971 + 80550951 80550991 41 TGGAGGGCCTCAAGGGGGACCTGGCTGGCCGCTACTACAAG TGGAGGGCCTCAAGGGGGACCTGGATGGCCGCTACTACAAG < 41bp 0.400279901556154 0.786993086968601 0.39380512 0.5614552 prediction 0.573986173937202 Functional Gain - CKMT2 ENSG00000131730 CDS Human protein_coding chr5:80550971 chr5:80550975 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_103057 0 0 0 0 1 Endoplasmic reticulum 0.500227139095376 0.500223315392319 0.1229104 0 hm5C_site_56202 DeepMRMD:0.1229104;iRNA_m5C:0 56203 chrX 48652484 48652484 1 + C G ESCA 48652483 + 48652463 48652503 41 CCTCATGCCTTTCCCTGGACCCCTACTGGGCTCACCCACGG CCTCATGCCTTTCCCTGGACCGCTACTGGGCTCACCCACGG < 41bp 0.527152642507762 0.814144673588881 0.015178204 0.047178864 prediction 0.573984062162238 Functional Gain - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48652483 chrX:48652484 synonymous SNV . 0 22 hm5C_associated_SNPs_103058 0 0 1 0 0 Cytosol 0.500231643921093 0.500231643895798 0 0 hm5C_site_56203 DeepMRMD:0;iRNA_m5C:0 56204 chr19 45567668 45567668 1 + C A rs71352251 45567664 + 45567644 45567684 41 ACCTCCAGCTCCCGCTCCAGCTCTCGCTCCAGCTCCCGCTC ACCTCCAGCTCCCGCTCCAGCTCTAGCTCCAGCTCCCGCTC < 41bp 0.368884587172583 0.786990767425357 0.3585677 0.84228384 prediction 0.573981534850714 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45567664 chr19:45567668 nonsynonymous SNV 0.761 0 25 hm5C_associated_SNPs_103059 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0.68456768 0 hm5C_site_56204 DeepMRMD:0.68456768;iRNA_m5C:0 56205 chr1 71512591 71512591 1 + T A COAD 71512587 + 71512567 71512607 41 AGGCGAAGAAAAGGTTGCCCCAGTTATGCGAAGAGCTAGTC AGGCGAAGAAAAGGTTGCCCCAGTAATGCGAAGAGCTAGTC < 41bp 0.491835974011536 0.786977215683658 0.4676052 0.8430332 prediction 0.573954431367316 Functional Gain - PTGER3 ENSG00000050628 CDS Human protein_coding chr1:71512587 chr1:71512591 nonsynonymous SNV 0.081 2 25 hm5C_associated_SNPs_103060 0 0 0 0 0 Endoplasmic reticulum 0.500231643920906 0.500231643921068 0.6860664 3.23296944770846e-13 hm5C_site_56205 DeepMRMD:0.6860664;iRNA_m5C:3.23296944770846e-13 56206 chr10 86008673 86008673 1 + C A LUAD 86008669 + 86008649 86008689 41 AGGTCACTGGTGCCCAGTGTCTCCCACAGGCGCTGGCCCTA AGGTCACTGGTGCCCAGTGTCTCCAACAGGCGCTGGCCCTA < 41bp 0.631015832269944 0.917988675184776 0.3980978 0.96449363 prediction 0.573945685829664 Functional Gain - RGR ENSG00000148604 CDS Human protein_coding chr10:86008669 chr10:86008673 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_103061 0 0 0 0 0 unknown 0.500231643921075 0.500231644040764 0.92898726 2.39378072919294e-10 hm5C_site_56206 DeepMRMD:0.92898726;iRNA_m5C:2.39378072919294e-10 56207 chr11 64081828 64081828 1 + C G rs541359948 64081827 + 64081807 64081847 41 CCCTGGCAGTCGCTGGAGGCCCCCGGAAGACAGGTGAGAGC CCCTGGCAGTCGCTGGAGGCCGCCGGAAGACAGGTGAGAGC < 41bp 0.483120888722143 0.786966704592607 0.58062994 0.827983 prediction 0.573933409185213 Functional Gain - ESRRA ENSG00000173153 CDS Human protein_coding chr11:64081827 chr11:64081828 nonsynonymous SNV 0.990 0 22 hm5C_associated_SNPs_103062 0 0 1 0 1 Cytosol 0.500231643921092 0.500231644565547 0.49470612 1.2889098677249e-09 hm5C_site_56207 DeepMRMD:0.49470612;iRNA_m5C:1.2889098677249e-09 56208 chr1 248059235 248059235 1 + C A LUSC 248059231 + 248059211 248059251 41 GTGGTGTGGAGTGCCTGCTTCTGGCTGTCATGGCCTATGAC GTGGTGTGGAGTGCCTGCTTCTGGATGTCATGGCCTATGAC < 41bp 0.612565794863154 0.899520930943689 0.86549914 0.8682022 prediction 0.57391027216107 Functional Gain - OR2W3 ENSG00000238243 CDS Human protein_coding chr1:248059231 chr1:248059235 nonsynonymous SNV 0.922 3 25 hm5C_associated_SNPs_103063 0 0 1 0 0 exosome 0.500232638687594 0.500231691793474 0.00540612000000018 0 hm5C_site_56208 DeepMRMD:0.00540612000000018;iRNA_m5C:0 56209 chr2 39009025 39009025 1 + T A rs149539286 39009021 + 39009001 39009041 41 TCTTATTGAAGGACATCTTACAGCTTCCCAATGAGAGGCCA TCTTATTGAAGGACATCTTACAGCATCCCAATGAGAGGCCA < 41bp 0.518764014429346 0.805712968651358 0.18168834 0.19321147 prediction 0.573897908444025 Functional Gain - GEMIN6 ENSG00000152147 CDS Human protein_coding chr2:39009021 chr2:39009025 synonymous SNV . 0 25 hm5C_associated_SNPs_103064 0 0 1 0 0 Ribosome 0.500231643921093 0.5002316439211 0 1.46549439250521e-14 hm5C_site_56209 DeepMRMD:0;iRNA_m5C:1.46549439250521e-14 56210 chr3 137717798 137717798 1 + T G SKCM 137717795 + 137717775 137717815 41 TTGCTGCCACCTGCATGGACCAGTGGAGCACCCAAGACTTG TTGCTGCCACCTGCATGGACCAGGGGAGCACCCAAGACTTG < 41bp 0.406345242274098 0.786948536880557 0.385769 0.8878994 prediction 0.573897073761115 Functional Gain - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137717795 chr3:137717798 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_103065 0 0 0 0 0 Endoplasmic reticulum 0.500231632327777 0.500231639692561 0.7757988 1.47295673436076e-08 hm5C_site_56210 DeepMRMD:0.7757988;iRNA_m5C:1.47295673436076e-08 56211 chr18 14339562 14339562 1 + C A rs113274851 14339558 + 14339538 14339578 41 ACTGTCAGGGGCCCTGTCCTCAACCCCGGGTCTGACACTTG ACTGTCAGGGGCCCTGTCCTCAACACCGGGTCTGACACTTG < 41bp 0.41969073309787 0.786942387091614 0.220606 0.25030905 prediction 0.573884774183228 Functional Gain - CYP4F35P ENSG00000265787 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr18:14339558 chr18:14339562 . . 0 25 hm5C_associated_SNPs_103066 0 0 0 0 2 unknown 0.500231643922002 0.500231643921093 0 0 hm5C_site_56211 DeepMRMD:0;iRNA_m5C:0 56212 chr20 62729409 62729409 1 + C A LUAD 62729405 + 62729385 62729425 41 CCATCCGTGCCCTCGACGTCCGCACGTCCAGCAAAGCCCAG CCATCCGTGCCCTCGACGTCCGCAAGTCCAGCAAAGCCCAG < 41bp 0.367770389156182 0.786940111989705 0.035875052 0.054692447 prediction 0.573880223979411 Functional Gain - OPRL1 ENSG00000125510 CDS Human protein_coding chr20:62729405 chr20:62729409 nonsynonymous SNV 0.200 3 25 hm5C_associated_SNPs_103067 0 0 0 0 0 exosome 0.500231715675413 0.500231643921092 0 0 hm5C_site_56212 DeepMRMD:0;iRNA_m5C:0 56213 chr10 65357838 65357838 1 + C A LIHC 65357834 + 65357814 65357854 41 TTTTGTCATATGGCTGCTTTCTCCCTATACCAAAGGAGCAA TTTTGTCATATGGCTGCTTTCTCCATATACCAAAGGAGCAA < 41bp 0.622300656244097 0.909240406868126 0.07986012 0.96094334 prediction 0.573879501248059 Functional Gain - REEP3 ENSG00000165476 CDS Human protein_coding chr10:65357834 chr10:65357838 synonymous SNV . 0 25 hm5C_associated_SNPs_103068 0 0 1 0 1 Endoplasmic reticulum 0.5002316439211 0.500231767622125 0.92188668 2.47402049735612e-07 hm5C_site_56213 DeepMRMD:0.92188668;iRNA_m5C:2.47402049735612e-07 56214 chr9 72785432 72785432 1 + G T SARC 72785436 - 72785416 72785456 41 CTGAGTAAATGTACATTCATCTTGCTCGAAAGTACACTCTC CTGAGTAAATGTACATTCATCTTGATCGAAAGTACACTCTC < 41bp 0.395638881036097 0.786920630414123 0.034101486 0.037236184 prediction 0.573841260828246 Functional Gain - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72785436 chr9:72785432 nonsynonymous SNV 0.993 0 25 hm5C_associated_SNPs_103069 0 0 0 0 0 nucleus 0.50021529316472 0.499559383993965 0 0 hm5C_site_56214 DeepMRMD:0;iRNA_m5C:0 56215 chr19 19645867 19645867 1 + C A THCA 19645863 + 19645843 19645883 41 GCGTTCCCGTTGCCCGCTCTCTCCCGGAAGCAGAGGACGGT GCGTTCCCGTTGCCCGCTCTCTCCAGGAAGCAGAGGACGGT < 41bp 0.56725643649882 0.854173367611004 0.1251888 0.9186684 prediction 0.573833862224367 Functional Gain - YJEFN3 ENSG00000250067;ENSG00000258674 CDS Human other chr19:19645863 chr19:19645867 synonymous SNV . 0 25 hm5C_associated_SNPs_103070 0 0 1 0 1 chromatin 0.500231643921031 0.500264680571134 0.8373368 6.60733002058045e-05 hm5C_site_56215 DeepMRMD:0.8373368;iRNA_m5C:6.60733002058045e-05 56216 chr11 66291352 66291352 1 + C G BLCA 66291351 + 66291331 66291371 41 TGCTCAATGTCATCCACACCCCGGTGAGCCCCATCTCCGGC TGCTCAATGTCATCCACACCCGGGTGAGCCCCATCTCCGGC < 41bp 0.529157146090476 0.816067345530136 0.25540692 0.91805184 prediction 0.573820398879319 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66291351 chr11:66291352 nonsynonymous SNV 0.841 1 22 hm5C_associated_SNPs_103071 0 0 1 0 1 membrane 0.500237971884259 0.500231549986892 0.83610368 0 hm5C_site_56216 DeepMRMD:0.83610368;iRNA_m5C:0 56217 chr2 198339216 198339216 1 + C A rs535817286 198339212 + 198339192 198339232 41 TTGAGGTCAGGAGTTCTAGACCAGCCTGGTCAACATGGCGA TTGAGGTCAGGAGTTCTAGACCAGACTGGTCAACATGGCGA < 41bp 0.432614541423622 0.786897831750774 0.10463971 0.12777492 prediction 0.573795663501548 Functional Gain - COQ10B ENSG00000115520 UTR3 Human protein_coding chr2:198339212 chr2:198339216 . . 0 25 hm5C_associated_SNPs_103072 0 0 0 0 0 Ribosome 0.500231643914303 0.500231643910174 0 0 hm5C_site_56217 DeepMRMD:0;iRNA_m5C:0 56218 chr19 39961032 39961032 1 + C A THCA 39961028 + 39961008 39961048 41 CCCTGGCAGCTGAAGGTGCTCCCCCGGGACCTGCAGCTCTG CCCTGGCAGCTGAAGGTGCTCCCCAGGGACCTGCAGCTCTG < 41bp 0.370070487120961 0.786886055512424 0.04687354 0.2832458 prediction 0.573772111024847 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39961028 chr19:39961032 synonymous SNV . 0 25 hm5C_associated_SNPs_103073 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_56218 DeepMRMD:0;iRNA_m5C:0 56219 chr1 79120770 79120770 1 + T A COAD 79120766 + 79120746 79120786 41 GATCCCTGGTTCAACAAATACGAATTCTGCTGCTGGGTCCA GATCCCTGGTTCAACAAATACGAAATCTGCTGCTGGGTCCA < 41bp 0.466124833513429 0.786841751731353 0.3858124 0.681335 prediction 0.573683503462706 Functional Gain - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79120766 chr1:79120770 nonsynonymous SNV 0.894 4 25 hm5C_associated_SNPs_103074 0 0 0 0 1 exosome 0.500231647592709 0.500231643921414 0.36267 0 hm5C_site_56219 DeepMRMD:0.36267;iRNA_m5C:0 56220 chr11 61404570 61404570 1 + C A ACC 61404566 + 61404546 61404586 41 CCGAGAAGACCTCCTTTTTCCAGGCTTTAGGTATCATCACT CCGAGAAGACCTCCTTTTTCCAGGATTTAGGTATCATCACT < 41bp 0.601238342803763 0.888038199107224 0.79965377 0.7649572 prediction 0.573599712606921 Functional Gain - RPLP0P2 ENSG00000243742 ncRNA_exonic Human transcribed_processed_pseudogene chr11:61404566 chr11:61404570 . . 0 25 hm5C_associated_SNPs_103075 0 0 0 0 0 unknown 0.50023164381477 0.500231643658758 0 0 hm5C_site_56220 DeepMRMD:0;iRNA_m5C:0 56221 chr19 17392483 17392483 1 + C G rs7246262 17392482 + 17392462 17392502 41 ACCCGGTGGCATCCTCCCACCCGGGCTCTTATCGGCGGTCC ACCCGGTGGCATCCTCCCACCGGGGCTCTTATCGGCGGTCC < 41bp 0.506256439691431 0.79305323078622 0.23062536 0.8748302 prediction 0.57359358218958 Functional Gain - ANKLE1 ENSG00000160117 UTR5 Human protein_coding chr19:17392482 chr19:17392483 . . 0 22 hm5C_associated_SNPs_103076 0 0 0 0 0 chromatin 0.500231643922463 0.50023164397591 0.7496604 1.0689360507854e-10 hm5C_site_56221 DeepMRMD:0.7496604;iRNA_m5C:1.0689360507854e-10 56222 chr12 69747417 69747417 1 + C A rs534565279 69747413 + 69747393 69747433 41 CGAGTAGCTGGGATTACGGGCGCCCGCCACCACGCCCGGCT CGAGTAGCTGGGATTACGGGCGCCAGCCACCACGCCCGGCT < 41bp 0.582981562466046 0.869752838553612 0.32699725 0.40670252 prediction 0.573542552175131 Functional Gain - LYZ ENSG00000257764 ncRNA_intronic Human antisense chr12:69747413 chr12:69747417 . . 0 25 hm5C_associated_SNPs_103077 1 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_56222 DeepMRMD:0;iRNA_m5C:0 Familial visceral amyloidosis, Ostertag type Familial visceral amyloidosis, Ostertag type 56223 chr10 124742959 124742959 1 + C G rs377253809 124742958 + 124742938 124742978 41 AACACAACAGCCTCACAATTCCGAGTCCAGCATGTGCTTCG AACACAACAGCCTCACAATTCGGAGTCCAGCATGTGCTTCG < 41bp 0.486845696975441 0.786767175961088 0.40851188 0.8747715 prediction 0.573534351922176 Functional Gain - PSTK ENSG00000179988 CDS Human protein_coding chr10:124742958 chr10:124742959 nonsynonymous SNV 0.049 0 22 hm5C_associated_SNPs_103078 0 0 1 0 1 nucleus 0.500231649213495 0.500231643920053 0.749543 0 hm5C_site_56223 DeepMRMD:0.749543;iRNA_m5C:0 56224 chr11 123886831 123886831 1 + C G LUSC 123886830 + 123886810 123886850 41 TTCTGTGACGCACCGCCCATCCTGAAACTGGCCTGTGCAGA TTCTGTGACGCACCGCCCATCGTGAAACTGGCCTGTGCAGA < 41bp 0.488322576225392 0.786766734881984 0.09631589 0.47166166 prediction 0.573533469763967 Functional Gain - OR10G4 ENSG00000254737 CDS Human protein_coding chr11:123886830 chr11:123886831 nonsynonymous SNV 0.784 2 22 hm5C_associated_SNPs_103079 0 0 0 0 0 unknown 0.500231644069538 0.500231645228866 0 2.31865593391944e-09 hm5C_site_56224 DeepMRMD:0;iRNA_m5C:2.31865593391944e-09 56225 chr18 29598847 29598847 1 + C G rs34097443 29598846 + 29598826 29598866 41 GATGGGCTCCGTGCTGAGCACCGACAGCGGCAAATCGGCGC GATGGGCTCCGTGCTGAGCACGGACAGCGGCAAATCGGCGC < 41bp 0.518268014561265 0.805032057037229 0.16926405 0.20322365 prediction 0.573528084951929 Functional Gain - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29598846 chr18:29598847 synonymous SNV . 0 22 hm5C_associated_SNPs_103080 0 0 1 0 0 Nucleus 0.500371439902479 0.500230784906869 0 0 hm5C_site_56225 DeepMRMD:0;iRNA_m5C:0 56226 chr21 30699657 30699657 1 + T G rs140585235 30699654 + 30699634 30699674 41 GTCATTAGCTTGGGAGACGACTCTGAGACGGACACCGAAGG GTCATTAGCTTGGGAGACGACTCGGAGACGGACACCGAAGG < 41bp 0.426189127384534 0.786754629979134 0.26138276 0.26150912 prediction 0.573509259958268 Functional Gain - BACH1 ENSG00000156273 CDS Human protein_coding chr21:30699654 chr21:30699657 synonymous SNV . 0 24 hm5C_associated_SNPs_103081 0 0 1 0 1 Cytosol 0.500210107995363 0.500231643921003 0 4.307185127983e-05 hm5C_site_56226 DeepMRMD:0;iRNA_m5C:4.307185127983e-05 56227 chr11 56127836 56127836 1 + C G LUAD 56127835 + 56127815 56127855 41 TCTGGTGCTCTATGGGCTGACCATGGCAGGGAACCTGGGCA TCTGGTGCTCTATGGGCTGACGATGGCAGGGAACCTGGGCA < 41bp 0.502742971781724 0.789493835977739 0.1541858 0.16898674 prediction 0.573501728392031 Functional Gain - OR8J1 ENSG00000172487 CDS Human protein_coding chr11:56127835 chr11:56127836 synonymous SNV . 0 22 hm5C_associated_SNPs_103082 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 1.11022302462516e-15 hm5C_site_56227 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 56228 chr19 55106574 55106574 1 + T G SARC 55106572 + 55106552 55106592 41 CCTTCTCTCCTAGGAGCCTACATCAAACCCACCCTCTCAGC CCTTCTCTCCTAGGAGCCTACAGCAAACCCACCCTCTCAGC < 41bp 0.445801829855411 0.786745293800622 0.036477953 0.051753968 prediction 0.573490587601244 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106572 chr19:55106574 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_103083 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 8.88178419700125e-16 hm5C_site_56228 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 56229 chr11 64359154 64359154 1 + C A rs148378818 64359150 + 64359130 64359170 41 GAGCATGCTGGAGAACTTCTCGGCCGCCGTGCCCAGCCACC GAGCATGCTGGAGAACTTCTCGGCAGCCGTGCCCAGCCACC < 41bp 0.608713343711531 0.895458172008947 0.9293314 0.94248825 prediction 0.57348965659483 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64359150 chr11:64359154 synonymous SNV . 0 25 hm5C_associated_SNPs_103084 0 0 0 0 1 unknown 0.500231643921093 0.500231333030391 0.0263137 0 hm5C_site_56229 DeepMRMD:0.0263137;iRNA_m5C:0 56230 chr8 22412044 22412044 1 + C G rs141486783 22412043 + 22412023 22412063 41 CAGGGCCCACCCCGCAGCCTCCGCGCTGGGCTCAGCCTGGA CAGGGCCCACCCCGCAGCCTCGGCGCTGGGCTCAGCCTGGA < 41bp 0.476755471067514 0.786719058162708 0.16559494 0.89182997 prediction 0.573438116325417 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22412043 chr8:22412044 nonsynonymous SNV 0.054 2 22 hm5C_associated_SNPs_103085 0 0 0 0 2 Cytosol 0.500231643918614 0.500231643920629 0.78365994 4.03166389162379e-12 hm5C_site_56230 DeepMRMD:0.78365994;iRNA_m5C:4.03166389162379e-12 56231 chr4 9784959 9784959 1 + C A KIRC 9784955 + 9784935 9784975 41 GACGAGGAGGAGGGTCCTTTCGATCGCATGTTCCAGATCTA GACGAGGAGGAGGGTCCTTTCGATAGCATGTTCCAGATCTA < 41bp 0.408334213596133 0.786718337045637 0.061019152 0.20791444 prediction 0.573436674091274 Functional Gain - DRD5 ENSG00000169676 CDS Human protein_coding chr4:9784955 chr4:9784959 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_103086 0 0 0 0 0 unknown 0.500231643915116 0.50023164407957 0 3.28909566249536e-10 hm5C_site_56231 DeepMRMD:0;iRNA_m5C:3.28909566249536e-10 56232 chr9 35801115 35801115 1 + T G LUSC 35801113 + 35801093 35801133 41 GCTCTGGGCACAGGAATCACCTTCATCATGTTTGGTGTTTC GCTCTGGGCACAGGAATCACCTGCATCATGTTTGGTGTTTC < 41bp 0.554779484642546 0.841493677096069 0.043724954 0.23305863 prediction 0.573428384907047 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35801113 chr9:35801115 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_103087 0 0 0 0 2 chromatin 0.500231643675666 0.500231642330483 0 0 hm5C_site_56232 DeepMRMD:0;iRNA_m5C:0 56233 chr16 27460382 27460382 1 + G T LUAD 27460386 - 27460366 27460406 41 GACCCCTCCAGGTGACCGGCCACCCCAGGGCAGTCCCCCAG GACCCCTCCAGGTGACCGGCCACCACAGGGCAGTCCCCCAG < 41bp 0.390614022916461 0.786681250105389 0.051680416 0.021790981 prediction 0.573362500210779 Functional Gain - IL21R ENSG00000103522 CDS Human protein_coding chr16:27460386 chr16:27460382 nonsynonymous SNV 0.092 2 25 hm5C_associated_SNPs_103088 0 0 0 0 0 nucleus 0.500231367905375 0.500231643880374 0 5.51949997262824e-07 hm5C_site_56233 DeepMRMD:0;iRNA_m5C:5.51949997262824e-07 56234 chr11 48238551 48238551 1 + C A COAD 48238547 + 48238527 48238567 41 CCCATGTACTTCTTCCTTAGCTGCCTGTCCTTGGTGGAGAT CCCATGTACTTCTTCCTTAGCTGCATGTCCTTGGTGGAGAT < 41bp 0.401915792508281 0.786673756361194 0.17733294 0.63570553 prediction 0.573347512722388 Functional Gain - OR4B1 ENSG00000175619 CDS Human protein_coding chr11:48238547 chr11:48238551 nonsynonymous SNV 0.008 4 25 hm5C_associated_SNPs_103089 0 0 0 0 0 unknown 0.500231643921092 0.500231643886508 0.27141106 0 hm5C_site_56234 DeepMRMD:0.27141106;iRNA_m5C:0 Multiple complex diseases 56235 chrX 14627263 14627263 1 + T G LUAD 14627260 + 14627240 14627280 41 TGCAGCCCCTGCCAGGGTCGCACTGGGCATCACCACAGTCT TGCAGCCCCTGCCAGGGTCGCACGGGGCATCACCACAGTCT < 41bp 0.402475893997021 0.786673703322408 0.19521162 0.83321166 prediction 0.573347406644817 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14627260 chrX:14627263 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_103090 0 0 0 0 1 nucleus 0.50023076021259 0.500231644089862 0.66642332 1.76775454319156e-06 hm5C_site_56235 DeepMRMD:0.66642332;iRNA_m5C:1.76775454319156e-06 56236 chr19 4969134 4969134 1 + C A rs542159835 4969130 + 4969110 4969150 41 GCGAGCGCTTGCGGAGGGCTCGGTCGCCAGCAACCGAGCGG GCGAGCGCTTGCGGAGGGCTCGGTAGCCAGCAACCGAGCGG < 41bp 0.56688315308662 0.85355600683962 0.5113368 0.79102194 prediction 0.573345707505999 Functional Gain - KDM4B ENSG00000127663 UTR5 Human protein_coding chr19:4969130 chr19:4969134 . . 0 25 hm5C_associated_SNPs_103091 0 0 1 0 0 Cytosol 0.500231643921093 0.500231643890513 0.55937028 0 hm5C_site_56236 DeepMRMD:0.55937028;iRNA_m5C:0 56237 chr1 202205106 202205106 1 + C G BLCA 202205102 + 202205082 202205122 41 CCGCAGAGGCGCTGTGGGAGCTGCCGAGCCTGCAGTCGCTG CCGCAGAGGCGCTGTGGGAGCTGCGGAGCCTGCAGTCGCTG < 41bp 0.509333674019301 0.795975331872721 0.38487878 0.5955696 prediction 0.57328331570684 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202205102 chr1:202205106 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_103092 0 0 0 0 2 nucleoplasm 0.50023156745296 0.500236233811444 0.1911392 9.33271696701432e-06 hm5C_site_56237 DeepMRMD:0.1911392;iRNA_m5C:9.33271696701432e-06 56238 chr1 40954798 40954798 1 + C G LUSC 40954797 + 40954777 40954817 41 GGACATATCTATTGACTTCACCCAGGAAGAGTGGGGGCAGC GGACATATCTATTGACTTCACGCAGGAAGAGTGGGGGCAGC < 41bp 0.507264092932252 0.793897279451222 0.027521014 0.077379584 prediction 0.573266373037939 Functional Gain - ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40954797 chr1:40954798 synonymous SNV . 0 22 hm5C_associated_SNPs_103093 0 0 1 0 2 insoluble cytoplasm 0.500231643921089 0.50023164394528 0 4.83826312347446e-11 hm5C_site_56238 DeepMRMD:0;iRNA_m5C:4.83826312347446e-11 56239 chr14 76642983 76642983 1 + T G HNSC 76642980 + 76642960 76643000 41 TTTTAGGAGACCAGCATAAACACTTTGGGGACTGAGAGGAT TTTTAGGAGACCAGCATAAACACGTTGGGGACTGAGAGGAT < 41bp 0.514834810537762 0.801467152030269 0.14639103 0.26433823 prediction 0.573264682985014 Functional Gain - GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76642980 chr14:76642983 synonymous SNV . 0 24 hm5C_associated_SNPs_103094 0 0 1 0 1 Nucleus 0.500231643828515 0.500231643921092 0 1.85155668575021e-10 hm5C_site_56239 DeepMRMD:0;iRNA_m5C:1.85155668575021e-10 56240 chr15 81295513 81295513 1 + C A ACC 81295509 + 81295489 81295529 41 ATGAGCGTGGTGTCGGCCTGCGTGCTCCTGACCCAGTGCCT ATGAGCGTGGTGTCGGCCTGCGTGATCCTGACCCAGTGCCT < 41bp 0.42418987275522 0.786628950907258 0.41258043 0.6139424 prediction 0.573257901814517 Functional Gain - TLNRD1 ENSG00000140406 CDS Human protein_coding chr15:81295509 chr15:81295513 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103095 0 0 1 0 0 unknown 0.50023153333238 0.500231582685385 0.2278848 9.87060100321457e-08 hm5C_site_56240 DeepMRMD:0.2278848;iRNA_m5C:9.87060100321457e-08 56241 chr1 231298699 231298699 1 + T G rs112692510 231298696 + 231298676 231298716 41 TCATCCCCAGCGCAGAGCAGCGCTGGCAGCCGGCGCCGCGA TCATCCCCAGCGCAGAGCAGCGCGGGCAGCCGGCGCCGCGA < 41bp 0.47207818359054 0.786622300062967 0.27445596 0.54645884 prediction 0.573244600125934 Functional Gain - TRIM67 ENSG00000119283 UTR5 Human protein_coding chr1:231298696 chr1:231298699 . . 0 24 hm5C_associated_SNPs_103096 0 0 0 0 0 exosome 0.500231632650981 0.50023164392114 0.09291768 2.2540317168307e-08 hm5C_site_56241 DeepMRMD:0.09291768;iRNA_m5C:2.2540317168307e-08 56242 chr12 31242219 31242219 1 + C A rs146376682 31242215 + 31242195 31242235 41 TGTGAGGAGCAGCCCCCTCCCTGACCTGGCCGGCCCAGCAC TGTGAGGAGCAGCCCCCTCCCTGAACTGGCCGGCCCAGCAC < 41bp 0.422661678351243 0.786616123427616 0.05134344 0.19824785 prediction 0.573232246855232 Functional Gain - DDX11 ENSG00000013573 intronic Human protein_coding chr12:31242215 chr12:31242219 . . 0 25 hm5C_associated_SNPs_103097 0 0 1 0 0 Cytosol 0.500231671281829 0.500231643921092 0 0 hm5C_site_56242 DeepMRMD:0;iRNA_m5C:0 56243 chr11 72946156 72946156 1 + C G rs559442375 72946155 + 72946135 72946175 41 CAGAGGCTCGTACGCTTTGCCCGAGATGCCAAGCCACCCAC CAGAGGCTCGTACGCTTTGCCGGAGATGCCAAGCCACCCAC < 41bp 0.47671892918102 0.786614333197228 0.3589641 0.9329732 prediction 0.573228666394456 Functional Gain - P2RY2 ENSG00000175591 CDS Human protein_coding chr11:72946155 chr11:72946156 nonsynonymous SNV 0.949 0 22 hm5C_associated_SNPs_103098 0 0 0 0 0 exosome 0.500231643932355 0.500231643921092 0.8659464 0 hm5C_site_56243 DeepMRMD:0.8659464;iRNA_m5C:0 56244 chr1 205241196 205241196 1 + T G UCEC 205241193 + 205241173 205241213 41 TGGTCCTCGTCCTGTTCCTCCTCTGGAAGCACTGGGACTCC TGGTCCTCGTCCTGTTCCTCCTCGGGAAGCACTGGGACTCC < 41bp 0.41310000504713 0.786605804145353 0.05606264 0.083215 prediction 0.573211608290705 Functional Gain - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205241193 chr1:205241196 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_103099 0 0 0 0 0 chromatin 0.500231643921234 0.500231643921092 0 0 hm5C_site_56244 DeepMRMD:0;iRNA_m5C:0 56245 chr12 57922962 57922962 1 + C G rs200717548 57922961 + 57922941 57922981 41 AGGCAGCTGTCCCTCTGCCTCCCCGGGCCCGCCCTGGCCGT AGGCAGCTGTCCCTCTGCCTCGCCGGGCCCGCCCTGGCCGT < 41bp 0.484067186448054 0.786598602447457 0.17200667 0.19895726 prediction 0.573197204894915 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57922961 chr12:57922962 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_103100 0 0 1 0 1 chromatin 0.500231643921092 0.500231644945765 0 2.04934536007784e-09 hm5C_site_56245 DeepMRMD:0;iRNA_m5C:2.04934536007784e-09 56246 chr22 45996361 45996361 1 + C G rs58806332 45996360 + 45996340 45996380 41 GCACAGCCGCAGGTGCACCTCCAGGCCAAATCATTGCTGCC GCACAGCCGCAGGTGCACCTCGAGGCCAAATCATTGCTGCC < 41bp 0.487810652919846 0.786590738848915 0.9160571 0.9182272 prediction 0.573181477697831 Functional Gain - FBLN1 ENSG00000077942 UTR3 Human protein_coding chr22:45996360 chr22:45996361 . . 0 22 hm5C_associated_SNPs_103101 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0.00434020000000013 0 hm5C_site_56246 DeepMRMD:0.00434020000000013;iRNA_m5C:0 56247 chr11 61249829 61249829 1 + C A LUAD 61249825 + 61249805 61249845 41 TGTGGGCAGTCACGTAGGCACCGGCTACAAATCAAATTTCC TGTGGGCAGTCACGTAGGCACCGGATACAAATCAAATTTCC < 41bp 0.392194551984264 0.786589875879241 0.1527729 0.27323747 prediction 0.573179751758483 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61249825 chr11:61249829 synonymous SNV . 0 25 hm5C_associated_SNPs_103102 0 0 0 0 2 exosome 0.500231643898483 0.500231643921065 0 4.51654269539858e-11 hm5C_site_56247 DeepMRMD:0;iRNA_m5C:4.51654269539858e-11 56248 chr16 88052199 88052199 1 + C A UCEC 88052195 + 88052175 88052215 41 ACCTCTTCCACCGCGAGGTGCAGGCTGTGTCCAACCTCTCG ACCTCTTCCACCGCGAGGTGCAGGATGTGTCCAACCTCTCG < 41bp 0.39516081619894 0.786566241349444 0.6431589 0.9050524 prediction 0.573132482698888 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88052195 chr16:88052199 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_103103 0 0 0 0 1 Cytosol 0.500231645546078 0.500231644227867 0.523787 0 hm5C_site_56248 DeepMRMD:0.523787;iRNA_m5C:0 56249 chr12 55714950 55714950 1 + C A LUAD 55714946 + 55714926 55714966 41 ACTGCTGCAACTTGCTTGTTCAGACACAAAATTCTTAGAGG ACTGCTGCAACTTGCTTGTTCAGAAACAAAATTCTTAGAGG < 41bp 0.423611417818364 0.786558119028321 0.33226836 0.33163053 prediction 0.573116238056642 Functional Gain - OR6C1 ENSG00000205330 CDS Human protein_coding chr12:55714946 chr12:55714950 nonsynonymous SNV 0.898 1 25 hm5C_associated_SNPs_103104 0 0 0 0 0 unknown 0.500231629619995 0.500235232728212 0 7.20621643468533e-06 hm5C_site_56249 DeepMRMD:0;iRNA_m5C:7.20621643468533e-06 56250 chr1 12835105 12835105 1 + C G OV 12835104 + 12835084 12835124 41 TCCCCACCCTGGAGGAGCTGCCCAGGGAGCTCTTTCCCCCA TCCCCACCCTGGAGGAGCTGCGCAGGGAGCTCTTTCCCCCA < 41bp 0.525721033982046 0.812256918422456 0.20701781 0.5843397 prediction 0.573071768880819 Functional Gain - PRAMEF12 ENSG00000116726 CDS Human protein_coding chr1:12835104 chr1:12835105 nonsynonymous SNV 0.138 4 22 hm5C_associated_SNPs_103105 0 0 0 0 0 unknown 0.500231643921093 0.500231643917438 0.1686794 0 hm5C_site_56250 DeepMRMD:0.1686794;iRNA_m5C:0 56251 chr11 60231776 60231776 1 + T A UCEC 60231772 + 60231752 60231792 41 TTTTTACAGTATATTATTTCCGGATCACTCCTGGCAGCAAC TTTTTACAGTATATTATTTCCGGAACACTCCTGGCAGCAAC < 41bp 0.498947652163905 0.786533884556942 0.25436646 0.16829738 prediction 0.573067769113884 Functional Gain - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60231772 chr11:60231776 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_103106 0 0 0 0 1 exosome 0.500231643920966 0.500231643921086 0 2.41140440948584e-13 hm5C_site_56251 DeepMRMD:0;iRNA_m5C:2.41140440948584e-13 56252 chr10 60936402 60936402 1 + C A rs532721197 60936398 + 60936378 60936418 41 CGCGCCGGGTCCTGCTCGGTCTCTCAGAGCCGCACACTCCG CGCGCCGGGTCCTGCTCGGTCTCTAAGAGCCGCACACTCCG < 41bp 0.435009227554255 0.786527228131162 0.08277935 0.9254763 prediction 0.573054456262323 Functional Gain - PHYHIPL ENSG00000165443 UTR5 Human protein_coding chr10:60936398 chr10:60936402 . . 0 25 hm5C_associated_SNPs_103107 0 0 0 0 0 cytosol 0.500227343142566 0.500231689180119 0.8509526 8.69207510678649e-06 hm5C_site_56252 DeepMRMD:0.8509526;iRNA_m5C:8.69207510678649e-06 56253 chr19 50906794 50906794 1 + C G HNSC 50906793 + 50906773 50906813 41 CATGGACCCCGACGTGATCACCGGTTACAACATCCAGAACT CATGGACCCCGACGTGATCACGGGTTACAACATCCAGAACT < 41bp 0.474636465269769 0.786522738695852 0.13650084 0.67324615 prediction 0.573045477391704 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50906793 chr19:50906794 synonymous SNV . 0 22 hm5C_associated_SNPs_103108 0 0 1 0 2 Nucleus 0.500231643921091 0.500231643921457 0.3464923 7.31636973227978e-13 hm5C_site_56253 DeepMRMD:0.3464923;iRNA_m5C:7.31636973227978e-13 56254 chr19 8121327 8121327 1 + T A LUAD 8121323 + 8121303 8121343 41 AGGTGCAGAGAGCCATGAAGCTCCTGGATGCTCGAAATAAG AGGTGCAGAGAGCCATGAAGCTCCAGGATGCTCGAAATAAG < 41bp 0.554832273888238 0.841337871671885 0.08585429 0.4081843 prediction 0.573011195567294 Functional Gain - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8121323 chr19:8121327 nonsynonymous SNV 0.024 3 25 hm5C_associated_SNPs_103109 0 0 0 0 2 Cytosol 0.500231649892249 0.500231414994165 0 0 hm5C_site_56254 DeepMRMD:0;iRNA_m5C:0 56255 chr19 35232821 35232821 1 + C A SARC 35232817 + 35232797 35232837 41 TTACCGTACATCAGAGAATTCACACTGGAGAAAAGCCATAT TTACCGTACATCAGAGAATTCACAATGGAGAAAAGCCATAT < 41bp 0.385004923348106 0.786495997667096 0.11285737 0.21669385 prediction 0.572991995334192 Functional Gain - ZNF181 ENSG00000197841 CDS Human protein_coding chr19:35232817 chr19:35232821 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_103110 0 0 0 0 0 nucleus 0.500231643921067 0.500231643872225 0 0 hm5C_site_56255 DeepMRMD:0;iRNA_m5C:0 56256 chr1 162769725 162769725 1 + C A COAD 162769721 + 162769701 162769741 41 GCTTTGAACAGGAACTTCAACCAGCAGGTAAGGCCTGTCTC GCTTTGAACAGGAACTTCAACCAGAAGGTAAGGCCTGTCTC < 41bp 0.392482070677146 0.78648315921903 0.2611969 0.30638403 prediction 0.572966318438059 Functional Gain - HSD17B7 ENSG00000132196 CDS Human protein_coding chr1:162769721 chr1:162769725 nonsynonymous SNV 0.329 0 25 hm5C_associated_SNPs_103111 0 0 1 2 1 Endoplasmic reticulum 0.500231643920945 0.500231643912554 0 0 hm5C_site_56256 DeepMRMD:0;iRNA_m5C:0 56257 chr17 41477150 41477150 1 + C G OV 41477149 + 41477129 41477169 41 CCACTGCCTCCTCCTTCTTGCCCCACTTCCAAGCCCTGCAT CCACTGCCTCCTCCTTCTTGCGCCACTTCCAAGCCCTGCAT < 41bp 0.526630313068372 0.813103833516665 0.029380232 0.21855345 prediction 0.572947040896585 Functional Gain - ARL4D ENSG00000175906 CDS Human protein_coding chr17:41477149 chr17:41477150 nonsynonymous SNV 0.975 3 22 hm5C_associated_SNPs_103112 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_56257 DeepMRMD:0;iRNA_m5C:0 56258 chr6 35745315 35745315 1 + T G UVM 35745313 + 35745293 35745333 41 GACTTGGACTCCGGTGGAGCCTTCTGTGCCCCCAGGGCCAG GACTTGGACTCCGGTGGAGCCTGCTGTGCCCCCAGGGCCAG < 41bp 0.571035764690372 0.857501599771656 0.0077856183 0.04766339 prediction 0.572931670162568 Functional Gain - CLPSL2 ENSG00000196748 CDS Human protein_coding chr6:35745313 chr6:35745315 nonsynonymous SNV 0.837 3 23 hm5C_associated_SNPs_103113 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56258 DeepMRMD:0;iRNA_m5C:0 56259 chr14 102028008 102028008 1 + C A UCEC 102028004 + 102027984 102028024 41 CGCTTCCTCGGCACGGCCTTCATGCTCTGGCTTCTCGATTT CGCTTCCTCGGCACGGCCTTCATGATCTGGCTTCTCGATTT < 41bp 0.412065476055591 0.786465810251551 0.15493265 0.07494366 prediction 0.572931620503101 Functional Gain - DIO3 ENSG00000197406 CDS Human protein_coding chr14:102028004 chr14:102028008 unknown 0.995 2 25 hm5C_associated_SNPs_103114 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_56259 DeepMRMD:0;iRNA_m5C:0 56260 chr16 66919297 66919297 1 + C G LUAD 66919296 + 66919276 66919316 41 TCTGGAGAGGGGCTTCAATACCGAGGCCCTCAACATTTACC TCTGGAGAGGGGCTTCAATACGGAGGCCCTCAACATTTACC < 41bp 0.50659254601423 0.793053708386717 0.42606854 0.39187533 prediction 0.572922324744973 Functional Gain - PDP2 ENSG00000172840 CDS Human protein_coding chr16:66919296 chr16:66919297 synonymous SNV . 0 22 hm5C_associated_SNPs_103115 0 0 1 0 0 nucleolus 0.500231643921092 0.500231643921092 0 0 hm5C_site_56260 DeepMRMD:0;iRNA_m5C:0 56261 chr10 124648214 124648214 1 + C A LUAD 124648210 + 124648190 124648230 41 GAGTGACAGGAAAACACCACCAAGCCTGATGAAGGCATTCT GAGTGACAGGAAAACACCACCAAGACTGATGAAGGCATTCT < 41bp 0.419381498841652 0.786458583534183 0.20498186 0.23730397 prediction 0.572917167068367 Functional Gain - LOC399815 ENSG00000255624 ncRNA_exonic Human transcribed_processed_pseudogene chr10:124648210 chr10:124648214 . . 0 25 hm5C_associated_SNPs_103116 0 0 0 1 0 unknown 0.500231643342127 0.500231643914136 0 1.14401843553935e-09 hm5C_site_56261 DeepMRMD:0;iRNA_m5C:1.14401843553935e-09 56262 chrX 47044935 47044935 1 + C A COAD 47044931 + 47044911 47044951 41 GCCCTGAGCGGGAGGAGAAGCTCACCGACTGGCAGAAGCTG GCCCTGAGCGGGAGGAGAAGCTCAACGACTGGCAGAAGCTG < 41bp 0.36848795775175 0.786458408191793 0.21608952 0.6258395 prediction 0.572916816383585 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47044931 chrX:47044935 nonsynonymous SNV 0.940 4 25 hm5C_associated_SNPs_103117 0 0 1 0 2 Ribosome 0.500222476585772 0.500231988750168 0.251679 1.90243287916392e-05 hm5C_site_56262 DeepMRMD:0.251679;iRNA_m5C:1.90243287916392e-05 56263 chr2 168725997 168725997 1 + C A HNSC 168725993 + 168725973 168726013 41 GTGGAGGACTTTATTGACTCCTACCATAACCTTACCCTCAA GTGGAGGACTTTATTGACTCCTACAATAACCTTACCCTCAA < 41bp 0.376163373004569 0.786458257840405 0.02246517 0.91109276 prediction 0.572916515680809 Functional Gain - B3GALT1 ENSG00000172318 CDS Human protein_coding chr2:168725993 chr2:168725997 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_103118 0 0 1 0 0 chromatin 0.500231643921092 0.50023164392113 0.82218552 7.50510764646606e-14 hm5C_site_56263 DeepMRMD:0.82218552;iRNA_m5C:7.50510764646606e-14 56264 chr1 202273743 202273743 1 + C A UCEC 202273739 + 202273719 202273759 41 CATCGGGGATGTGCCAACAGCTGCCCAGGCTCCGAGTCCTG CATCGGGGATGTGCCAACAGCTGCACAGGCTCCGAGTCCTG < 41bp 0.359614884584279 0.786456606108807 0.1114831 0.39033344 prediction 0.572913212217614 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273739 chr1:202273743 nonsynonymous SNV 0.944 4 25 hm5C_associated_SNPs_103119 0 0 0 0 2 nucleoplasm 0.500231643921463 0.500231643921272 0 0 hm5C_site_56264 DeepMRMD:0;iRNA_m5C:0 56265 chr1 164529123 164529123 1 + C A ESCA 164529119 + 164529099 164529139 41 GTCGGGATGGCCGGACACCCCGGCCTGTCCCAGCACTTGCA GTCGGGATGGCCGGACACCCCGGCATGTCCCAGCACTTGCA < 41bp 0.604045333901723 0.89049489266368 0.23500526 0.41963124 prediction 0.572899117523913 Functional Gain - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164529119 chr1:164529123 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103120 0 0 0 0 0 Ribosome 0.500231658233597 0.500231643921121 0 0 hm5C_site_56265 DeepMRMD:0;iRNA_m5C:0 56266 chr13 33591173 33591173 1 + C A rs200063460 33591169 + 33591149 33591189 41 CTGTACCACTGGGACCTGCCCCAGCGCCTGCAGGACGCCTA CTGTACCACTGGGACCTGCCCCAGAGCCTGCAGGACGCCTA < 41bp 0.421877100998262 0.786449284107001 0.7965598 0.8419662 prediction 0.572898568214001 Functional Gain - KL ENSG00000133116 CDS Human protein_coding chr13:33591169 chr13:33591173 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_103121 0 0 0 0 0 exosome 0.500231643921144 0.500231643922396 0.0908127999999999 2.50377496513465e-12 hm5C_site_56266 DeepMRMD:0.0908127999999999;iRNA_m5C:2.50377496513465e-12 56267 chrX 129059013 129059013 1 + C A LUAD 129059009 + 129058989 129059029 41 TTTCAAAATAAGGAGCTTCCCAGACCTGTGTTAGAAGGGCA TTTCAAAATAAGGAGCTTCCCAGAACTGTGTTAGAAGGGCA < 41bp 0.38888343741659 0.786441490967601 0.25042206 0.1776922 prediction 0.572882981935202 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129059009 chrX:129059013 nonsynonymous SNV 0.254 0 25 hm5C_associated_SNPs_103122 0 0 1 0 0 Cytosol 0.500231643921201 0.500231643911067 0 0 hm5C_site_56267 DeepMRMD:0;iRNA_m5C:0 56268 chr6 26021048 26021048 1 + T A LUAD 26021044 + 26021024 26021064 41 GGGCTATTTGAGGACACTAACCTGTGCGCCATCCACGCCAA GGGCTATTTGAGGACACTAACCTGAGCGCCATCCACGCCAA < 41bp 0.510800252403908 0.797240583932069 0.19190666 0.46875387 prediction 0.572880663056322 Functional Gain - HIST1H3A ENSG00000198366 CDS Human other chr6:26021044 chr6:26021048 nonsynonymous SNV 0.982 1 25 hm5C_associated_SNPs_103123 0 0 1 0 0 exosome 0.500231515431962 0.500231633010401 0 2.35156877081977e-07 hm5C_site_56268 DeepMRMD:0;iRNA_m5C:2.35156877081977e-07 56269 chr1 155108444 155108444 1 + C G HNSC 155108443 + 155108423 155108463 41 CGGAGCATGCGTGGTCTTCACCCTTGGCATGTTCTCCGCCG CGGAGCATGCGTGGTCTTCACGCTTGGCATGTTCTCCGCCG < 41bp 0.506151904438206 0.792582837471231 0.110729754 0.18220916 prediction 0.572861866066049 Functional Gain - SLC50A1 ENSG00000169241 CDS Human protein_coding chr1:155108443 chr1:155108444 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_103124 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921097 0 9.54791801177635e-15 hm5C_site_56269 DeepMRMD:0;iRNA_m5C:9.54791801177635e-15 56270 chr8 101225559 101225559 1 + C G rs2514681 101225558 + 101225538 101225578 41 GCAGGGCGCGGAGAACCCTGCCGGCCTGAAGAGCCAGGGCA GCAGGGCGCGGAGAACCCTGCGGGCCTGAAGAGCCAGGGCA < 41bp 0.525500535983129 0.811929995957418 0.41809428 0.8852401 prediction 0.572858919948577 Functional Gain - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101225558 chr8:101225559 synonymous SNV . 0 22 hm5C_associated_SNPs_103125 1 0 0 0 1 chromatin 0.500231592147412 0.500231643921072 0.7704802 1.03547321161912e-07 hm5C_site_56270 DeepMRMD:0.7704802;iRNA_m5C:1.03547321161912e-07 not specified not specified 56271 chr1 177247887 177247887 1 + C G BLCA 177247883 + 177247863 177247903 41 CTCTTCAACCTCTGCAAGCGCTGCCATCGCCAGCCTCGCTT CTCTTCAACCTCTGCAAGCGCTGCGATCGCCAGCCTCGCTT < 41bp 0.500838660987393 0.787264211375331 0.03986451 0.04763469 prediction 0.572851100775875 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177247883 chr1:177247887 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_103126 0 0 0 0 0 Nucleus 0.500231643920484 0.500231750486587 0 2.1313220699426e-07 hm5C_site_56271 DeepMRMD:0;iRNA_m5C:2.1313220699426e-07 56272 chr14 19553843 19553843 1 + C A rs575705167 19553839 + 19553819 19553859 41 GTCCGTCGAGAAGATCTGGACAAGCTCCACAGAGCTGCCTG GTCCGTCGAGAAGATCTGGACAAGATCCACAGAGCTGCCTG < 41bp 0.605321865228594 0.891744364011477 0.115801275 0.1928874 prediction 0.572844997565765 Functional Gain - POTEG ENSG00000222036 CDS Human protein_coding chr14:19553839 chr14:19553843 nonsynonymous SNV 0.663 2 25 hm5C_associated_SNPs_103127 0 0 0 0 1 exosome 0.500231643886213 0.500230179427828 0 0 hm5C_site_56272 DeepMRMD:0;iRNA_m5C:0 56273 chr4 944240 944240 1 + C A LIHC 944236 + 944216 944256 41 ACAGAAGTGTACAGAGGCTTCTGGCAACACGGATTGCCGTC ACAGAAGTGTACAGAGGCTTCTGGAAACACGGATTGCCGTC < 41bp 0.529269610342756 0.815685936340948 0.26433498 0.32381284 prediction 0.572832651996384 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:944236 chr4:944240 nonsynonymous SNV 0.471 1 25 hm5C_associated_SNPs_103128 0 0 0 0 2 chromatin 0.500231617186226 0.500231475276109 0 0 hm5C_site_56273 DeepMRMD:0;iRNA_m5C:0 56274 chr15 78805477 78805477 1 + C A UCEC 78805473 + 78805453 78805493 41 AGTCAGAGGCTCTTAGCAAACCCACTTTCAGTGAGGAACAA AGTCAGAGGCTCTTAGCAAACCCAATTTCAGTGAGGAACAA < 41bp 0.382311972253938 0.78638951418264 0.10233337 0.14813307 prediction 0.572779028365281 Functional Gain - HYKK ENSG00000188266 CDS Human protein_coding chr15:78805473 chr15:78805477 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_103129 0 0 0 0 1 nucleolus 0.500231644499873 0.50023164392361 0 0 hm5C_site_56274 DeepMRMD:0;iRNA_m5C:0 56275 chr2 112656268 112656268 1 + T G CHOL 112656266 + 112656246 112656286 41 CAGGACAGGTTCGGGACGTCCATCTGTCCATCCGTCCGGAG CAGGACAGGTTCGGGACGTCCAGCTGTCCATCCGTCCGGAG < 41bp 0.494510200099355 0.786386727479868 0.04549533 0.18225557 prediction 0.572773454959735 Functional Gain - MERTK ENSG00000153208 UTR5 Human protein_coding chr2:112656266 chr2:112656268 . . 0 23 hm5C_associated_SNPs_103130 0 0 1 0 0 Endoplasmic reticulum 0.500231643921553 0.50023164401747 0 1.91835658469586e-10 hm5C_site_56275 DeepMRMD:0;iRNA_m5C:1.91835658469586e-10 56276 chrX 78216351 78216351 1 + C A LUAD 78216347 + 78216327 78216367 41 GCCCTTTGCCTGCTCTGCTTCTACCTGAAGTATCTCAACAT GCCCTTTGCCTGCTCTGCTTCTACATGAAGTATCTCAACAT < 41bp 0.372117592087797 0.786345091553746 0.11754915 0.906927 prediction 0.572690183107492 Functional Gain - P2RY10 ENSG00000078589 CDS Human protein_coding chrX:78216347 chrX:78216351 nonsynonymous SNV 0.908 3 25 hm5C_associated_SNPs_103131 0 0 0 0 0 exosome 0.500231643921092 0.500231643921076 0.813854 0 hm5C_site_56276 DeepMRMD:0.813854;iRNA_m5C:0 56277 chrX 57619078 57619078 1 + C G BLCA 57619077 + 57619057 57619097 41 ACACGCCTGGGAGCCAGGGGCCGCTCCTGCCCAGCAGCCCG ACACGCCTGGGAGCCAGGGGCGGCTCCTGCCCAGCAGCCCG < 41bp 0.512468262278281 0.798802796839095 0.1867429 0.39525893 prediction 0.572669069121627 Functional Gain - ZXDB ENSG00000198455 CDS Human protein_coding chrX:57619077 chrX:57619078 synonymous SNV . 0 22 hm5C_associated_SNPs_103132 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_56277 DeepMRMD:0;iRNA_m5C:0 56278 chrX 136004487 136004487 1 + C G rs143009312 136004486 + 136004466 136004506 41 AAGGGAATAAAAGCAGGCTGCCGGACCCAGCAGTGGCAAGG AAGGGAATAAAAGCAGGCTGCGGGACCCAGCAGTGGCAAGG < 41bp 0.501356693517578 0.787680719632013 0.8061024 0.87993646 prediction 0.572648052228869 Functional Gain - RBMX;GPR101 ENSG00000234062 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:136004486 chrX:136004487 . . 0 22 hm5C_associated_SNPs_103133 0 0 1 0 0 unknown 0.500231643921093 0.500231643921092 0.14766812 0 hm5C_site_56278 DeepMRMD:0.14766812;iRNA_m5C:0 56279 chr21 34144506 34144506 1 + C G rs188054918 34144505 + 34144485 34144525 41 GCGGTAATGTGAGGAAGCCTCCCGCCAAACAGATGAGGGAG GCGGTAATGTGAGGAAGCCTCGCGCCAAACAGATGAGGGAG < 41bp 0.490340298993398 0.786308242964555 0.5535244 0.71137524 prediction 0.57261648592911 Functional Gain - C21orf62-AS1 ENSG00000205930 UTR5 Human antisense chr21:34144505 chr21:34144506 . . 0 22 hm5C_associated_SNPs_103134 0 0 0 0 1 unknown 0.50023164391982 0.500231644224318 0.31570168 6.08995964768155e-10 hm5C_site_56279 DeepMRMD:0.31570168;iRNA_m5C:6.08995964768155e-10 56280 chr10 708851 708851 1 + C A LIHC 708847 + 708827 708867 41 ACGTGGAAGAGGCGTGAACACTCTCGGGAGAGGTGGATGTA ACGTGGAAGAGGCGTGAACACTCTAGGGAGAGGTGGATGTA < 41bp 0.385384343020463 0.786303854951447 0.11369288 0.8994334 prediction 0.572607709902894 Functional Gain - PRR26 ENSG00000180525 CDS Human protein_coding chr10:708847 chr10:708851 synonymous SNV . 0 25 hm5C_associated_SNPs_103135 0 0 0 0 0 exosome 0.500231643921205 0.500231643921092 0.7988668 0 hm5C_site_56280 DeepMRMD:0.7988668;iRNA_m5C:0 56281 chr1 13933738 13933738 1 + C G SKCM 13933737 + 13933717 13933757 41 CGGCGTTGCCATGCCAGGTGCCGAAGATGATGTGGTGACTC CGGCGTTGCCATGCCAGGTGCGGAAGATGATGTGGTGACTC < 41bp 0.512358817221006 0.798659173972507 0.5327939 0.89420867 prediction 0.572600713503002 Functional Gain - PDPN ENSG00000162493 CDS Human protein_coding chr1:13933737 chr1:13933738 synonymous SNV . 0 22 hm5C_associated_SNPs_103136 0 0 0 0 2 Ribosome 0.500231707086541 0.500231643921081 0.72282954 0 hm5C_site_56281 DeepMRMD:0.72282954;iRNA_m5C:0 56282 chr19 55048205 55048205 1 + C A rs560993119 55048201 + 55048181 55048221 41 TTTGACCAGTACCATCTGTTCAGACACGGGGTTGCTCATGG TTTGACCAGTACCATCTGTTCAGAAACGGGGTTGCTCATGG < 41bp 0.399540350811507 0.78627599621068 0.09918222 0.23234579 prediction 0.57255199242136 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55048201 chr19:55048205 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103137 0 0 0 1 0 Nucleus 0.500231639957183 0.500231643925579 0 7.93679255650659e-09 hm5C_site_56282 DeepMRMD:0;iRNA_m5C:7.93679255650659e-09 56283 chr12 57883288 57883288 1 + C G SARC 57883287 + 57883267 57883307 41 CTTGGTTCAGTGCGGAGAGCCCTGACTCACATTGACCACAG CTTGGTTCAGTGCGGAGAGCCGTGACTCACATTGACCACAG < 41bp 0.491340302431952 0.78626371425217 0.11784732 0.30003646 prediction 0.57252742850434 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57883287 chr12:57883288 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_103138 0 0 1 0 2 Cytosol 0.500231643921044 0.500231643645473 0 0 hm5C_site_56283 DeepMRMD:0;iRNA_m5C:0 56284 chr17 18769234 18769234 1 + T G OV 18769232 + 18769212 18769252 41 GTTTTCAGCAAACTCGAATTCATCATGTATGGAGCTATCAA GTTTTCAGCAAACTCGAATTCAGCATGTATGGAGCTATCAA < 41bp 0.482804497444649 0.786263181449179 0.103390634 0.33249027 prediction 0.572526362898359 Functional Gain - PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18769232 chr17:18769234 nonsynonymous SNV 0.997 2 23 hm5C_associated_SNPs_103139 0 0 1 0 0 Ribosome 0.500231643915744 0.500231644279487 0 7.274856272943e-10 hm5C_site_56284 DeepMRMD:0;iRNA_m5C:7.274856272943e-10 56285 chrX 66765155 66765155 1 + T A KIRC 66765151 + 66765131 66765171 41 CACCTCCCGGCGCCAGTTTGCTGCTGCTGCAGCAGCAGCAG CACCTCCCGGCGCCAGTTTGCTGCAGCTGCAGCAGCAGCAG < 41bp 0.524116240952264 0.81037926359029 0.26449642 0.35740364 prediction 0.572526045276051 Functional Gain - AR ENSG00000169083 CDS Human protein_coding chrX:66765151 chrX:66765155 nonsynonymous SNV 0.424 2 25 hm5C_associated_SNPs_103140 0 0 0 0 0 Endoplasmic reticulum 0.500231643921093 0.500231643921095 0 4.21884749357559e-15 hm5C_site_56285 DeepMRMD:0;iRNA_m5C:4.21884749357559e-15 56286 chr18 61232795 61232795 1 + T A MESO 61232791 + 61232771 61232811 41 TACACCAAGGGGAAGCTCAGCATGTTCGTGCTGCTGCCATC TACACCAAGGGGAAGCTCAGCATGATCGTGCTGCTGCCATC < 41bp 0.488331353906273 0.786260970224035 0.32435906 0.13672194 prediction 0.572521940448069 Functional Gain - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61232791 chr18:61232795 nonsynonymous SNV 0.724 1 25 hm5C_associated_SNPs_103141 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_56286 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 56287 chr17 43224920 43224920 1 + C G rs140969056 43224919 + 43224899 43224939 41 CTCCACTCCCCCGCCCGCCCCCGGCCCCGGCTTTCCGATCT CTCCACTCCCCCGCCCGCCCCGGGCCCCGGCTTTCCGATCT < 41bp 0.499920680223665 0.786252145160214 0.12479454 0.80418885 prediction 0.572504290320428 Functional Gain - HEXIM1 ENSG00000186834 UTR5 Human protein_coding chr17:43224919 chr17:43224920 . . 0 22 hm5C_associated_SNPs_103142 0 0 0 0 0 Ribosome 0.500231643922015 0.500231643921092 0.6083777 0 hm5C_site_56287 DeepMRMD:0.6083777;iRNA_m5C:0 56288 chr10 88418390 88418390 1 + C A UCEC 88418386 + 88418366 88418406 41 AAGAGGCGTGCGGCATTTGTCCTGCTGGGCGTTTGGCTCTA AAGAGGCGTGCGGCATTTGTCCTGATGGGCGTTTGGCTCTA < 41bp 0.385842609202492 0.78625133476027 0.8360439 0.79402125 prediction 0.57250266952054 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88418386 chr10:88418390 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_103143 0 0 0 0 1 exosome 0.500231278662659 0.500231534417693 0 5.11510069634014e-07 hm5C_site_56288 DeepMRMD:0;iRNA_m5C:5.11510069634014e-07 56289 chr6 33883197 33883197 1 + C A rs112202236 33883193 + 33883173 33883213 41 GGGATGGGTGGAGGCAGTGACAGGCTCCATGTATTGGTCAT GGGATGGGTGGAGGCAGTGACAGGATCCATGTATTGGTCAT < 41bp 0.462425449062589 0.786246160452041 0.7479366 0.80517495 prediction 0.572492320904083 Functional Gain - MIR7159;MIR1275 ENSG00000233183 ncRNA_exonic Human lincRNA chr6:33883193 chr6:33883197 . . 0 25 hm5C_associated_SNPs_103144 0 0 0 0 0 unknown 0.500231643921299 0.500231643922962 0.1144767 3.32467386954249e-12 hm5C_site_56289 DeepMRMD:0.1144767;iRNA_m5C:3.32467386954249e-12 56290 chr17 51900754 51900754 1 + C G LUSC 51900753 + 51900733 51900773 41 GAAATGGGTTGCGATGATCCCCCAGAAAAACCAAACAGCCT GAAATGGGTTGCGATGATCCCGCAGAAAAACCAAACAGCCT < 41bp 0.488685524229979 0.786230272704439 0.063854784 0.19355243 prediction 0.572460545408879 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51900753 chr17:51900754 synonymous SNV . 0 22 hm5C_associated_SNPs_103145 0 0 0 0 0 exosome 0.5002316444683 0.500231643887425 0 0 hm5C_site_56290 DeepMRMD:0;iRNA_m5C:0 56291 chr17 40925538 40925538 1 + C A UCEC 40925534 + 40925514 40925554 41 GCCGTGGCAGTATCGCTTCCCACCCTTCTTTACGTGAGGCT GCCGTGGCAGTATCGCTTCCCACCATTCTTTACGTGAGGCT < 41bp 0.395013553439526 0.786212743605469 0.0044662654 0.011352241 prediction 0.572425487210937 Functional Gain - VPS25 ENSG00000131475 CDS Human protein_coding chr17:40925534 chr17:40925538 synonymous SNV . 0 25 hm5C_associated_SNPs_103146 0 0 1 0 1 Ribosome 0.500231644629936 0.500231643931126 0 0 hm5C_site_56291 DeepMRMD:0;iRNA_m5C:0 56292 chr2 234621782 234621782 1 + C A rs41270755 234621778 + 234621758 234621798 41 TGGCTCAGCATGCGGGAGGCCTTGCGGGACCTCCATGCGAG TGGCTCAGCATGCGGGAGGCCTTGAGGGACCTCCATGCGAG < 41bp 0.406530471761018 0.786204831357844 0.39563456 0.5897191 prediction 0.572409662715688 Functional Gain - UGT1A5 ENSG00000240224;ENSG00000241635 CDS Human other chr2:234621778 chr2:234621782 synonymous SNV . 0 25 hm5C_associated_SNPs_103147 0 0 0 0 0 exosome 0.500231715362644 0.50022472397624 0.1794382 0 hm5C_site_56292 DeepMRMD:0.1794382;iRNA_m5C:0 56293 chr10 15146039 15146039 1 + T G STAD 15146037 + 15146017 15146057 41 CATTTGAAGATCTGTCAAAACCTAAGAGAAAGCTTGCTGAC CATTTGAAGATCTGTCAAAACCGAAGAGAAAGCTTGCTGAC < 41bp 0.503861909232374 0.790065617728381 0.05998677 0.27967745 prediction 0.572407416992013 Functional Gain - RPP38 ENSG00000152464 CDS Human protein_coding chr10:15146037 chr10:15146039 synonymous SNV . 0 23 hm5C_associated_SNPs_103148 0 0 1 0 0 exosome 0.50023168444361 0.50023167797524 0 0 hm5C_site_56293 DeepMRMD:0;iRNA_m5C:0 56294 chr21 46047329 46047329 1 + C A LUSC 46047325 + 46047305 46047345 41 AGCTCCTGCACGCCCTCGTGCTGCCAGCAGTCTAGCTGCCA AGCTCCTGCACGCCCTCGTGCTGCAAGCAGTCTAGCTGCCA < 41bp 0.404718525114647 0.786145346242919 0.16661066 0.20975363 prediction 0.572290692485839 Functional Gain - KRTAP10-9 ENSG00000221837 CDS Human protein_coding chr21:46047325 chr21:46047329 nonsynonymous SNV 0.926 0 25 hm5C_associated_SNPs_103149 0 0 0 0 0 unknown 0.499993926009984 0.500248354403131 0 0.000496708806261514 hm5C_site_56294 DeepMRMD:0;iRNA_m5C:0.000496708806261514 56295 chr7 142829219 142829219 1 + C A UCEC 142829215 + 142829195 142829235 41 TCTGTTTTCTCCAGCATGCGCTTGCTCCAGCTCCTGTTCAG TCTGTTTTCTCCAGCATGCGCTTGATCCAGCTCCTGTTCAG < 41bp 0.422496612689405 0.786127432405565 0.10086876 0.18591169 prediction 0.57225486481113 Functional Gain - PIP ENSG00000159763 CDS Human protein_coding chr7:142829215 chr7:142829219 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_103150 0 0 0 0 1 exosome 0.500231614901586 0.500231642117492 0 5.44318123907317e-08 hm5C_site_56295 DeepMRMD:0;iRNA_m5C:5.44318123907317e-08 56296 chr7 23163426 23163426 1 + C G HNSC 23163425 + 23163405 23163445 41 TGTGACGTGATCCTCATGGTCCAGGAAAGAAAGATACCTGC TGTGACGTGATCCTCATGGTCGAGGAAAGAAAGATACCTGC < 41bp 0.502208454427606 0.788278086828404 0.17920545 0.8936746 prediction 0.572139264801596 Functional Gain - KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23163425 chr7:23163426 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_103151 0 0 1 0 2 cytosol 0.50023162283459 0.500230371202858 0.7873492 0 hm5C_site_56296 DeepMRMD:0.7873492;iRNA_m5C:0 56297 chr14 23304015 23304015 1 + C A rs143683198 23304011 + 23303991 23304031 41 AGGTTGCAGTGAGCCAAGGTCACACCATTGCACTCCAACCT AGGTTGCAGTGAGCCAAGGTCACAACATTGCACTCCAACCT < 41bp 0.428251092190554 0.786052576148941 0.45030698 0.56361663 prediction 0.572105152297882 Functional Gain - MRPL52 ENSG00000172590 UTR3 Human protein_coding chr14:23304011 chr14:23304015 . . 0 25 hm5C_associated_SNPs_103152 0 0 1 1 0 Ribosome 0.500232599510069 0.500261499980457 0.12723326 5.78009407754543e-05 hm5C_site_56297 DeepMRMD:0.12723326;iRNA_m5C:5.78009407754543e-05 56298 chrX 591471 591471 1 + T G STAD 591469 + 591449 591489 41 ATTGCACCAGACAGGCAGCGCATGGGGGGCTGGGCGAGGTC ATTGCACCAGACAGGCAGCGCAGGGGGGGCTGGGCGAGGTC < 41bp 0.50088751412306 0.78693536402843 0.8816517 0.887066 prediction 0.57209569981074 Functional Gain - SHOX ENSG00000185960 UTR5 Human protein_coding chrX:591469 chrX:591471 . . 0 23 hm5C_associated_SNPs_103153 0 0 0 0 0 Nucleus 0.50023164348162 0.500231643929192 0.0108286 8.95145069179648e-10 hm5C_site_56298 DeepMRMD:0.0108286;iRNA_m5C:8.95145069179648e-10 56299 chr1 159799841 159799841 1 + T G TGCT 159799838 + 159799818 159799858 41 TGGAGACTCTGTACCATTCCCGCTTCCTGGGCCGAGCCCAG TGGAGACTCTGTACCATTCCCGCGTCCTGGGCCGAGCCCAG < 41bp 0.389618752652964 0.786039959515321 0.3788494 0.6948119 prediction 0.572079919030642 Functional Gain - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159799838 chr1:159799841 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_103154 0 0 0 0 0 exosome 0.500231607046271 0.50023129460562 0.3896238 0 hm5C_site_56299 DeepMRMD:0.3896238;iRNA_m5C:0 56300 chr4 159092463 159092463 1 + C G BLCA 159092462 + 159092442 159092482 41 CTGCTCCAGAGCTTACGCACCCGCGGGACGCACAGGGAGCA CTGCTCCAGAGCTTACGCACCGGCGGGACGCACAGGGAGCA < 41bp 0.514018700533053 0.800057761605698 0.31185699 0.7251556 prediction 0.572078122145289 Functional Gain - FAM198B ENSG00000164125 CDS Human protein_coding chr4:159092462 chr4:159092463 nonsynonymous SNV 0.012 3 22 hm5C_associated_SNPs_103155 0 0 0 0 0 Cytosol 0.500233982980934 0.500231981794956 0.4503112 0 hm5C_site_56300 DeepMRMD:0.4503112;iRNA_m5C:0 56301 chr12 48359119 48359119 1 + C A UCEC 48359115 + 48359095 48359135 41 CACACAGTGATCAGAGATTGCGCCCTCAGCGAACGTGAGTT CACACAGTGATCAGAGATTGCGCCATCAGCGAACGTGAGTT < 41bp 0.36487381312323 0.786031006450645 0.2453317 0.36934215 prediction 0.57206201290129 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48359115 chr12:48359119 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_103156 0 0 1 0 2 Ribosome 0.500237405716747 0.500230530514014 0 0 hm5C_site_56301 DeepMRMD:0;iRNA_m5C:0 56302 chr9 139738943 139738943 1 + C A LUAD 139738939 + 139738919 139738959 41 TCAAGGTGGCGACCCCGGGACCCGCGTCCAAGTGCTCGCCA TCAAGGTGGCGACCCCGGGACCCGAGTCCAAGTGCTCGCCA < 41bp 0.428574269605797 0.786029384429011 0.10906139 0.12823427 prediction 0.572058768858023 Functional Gain - C9orf172 ENSG00000232434 CDS Human protein_coding chr9:139738939 chr9:139738943 nonsynonymous SNV 0.010 1 25 hm5C_associated_SNPs_103157 0 0 0 0 0 chromatin 0.500231643921092 0.500231643546949 0 0 hm5C_site_56302 DeepMRMD:0;iRNA_m5C:0 56303 chr2 132021902 132021902 1 + C G rs200269587 132021901 + 132021881 132021921 41 CAACGAGCGGTTCCGCTGCCCCGAGGCGCTCTTCCAGCCTT CAACGAGCGGTTCCGCTGCCCGGAGGCGCTCTTCCAGCCTT < 41bp 0.519429071655487 0.805454334610218 0.7461618 0.9017486 prediction 0.572050525909462 Functional Gain - POTEE ENSG00000188219 CDS Human protein_coding chr2:132021901 chr2:132021902 synonymous SNV . 0 22 hm5C_associated_SNPs_103158 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.3111736 0 hm5C_site_56303 DeepMRMD:0.3111736;iRNA_m5C:0 56304 chr5 140431651 140431651 1 + C G LUSC 140431650 + 140431630 140431670 41 CTGAGCTGGTGCTGAACAAACCCCTGGACCGAGAGGAGCAG CTGAGCTGGTGCTGAACAAACGCCTGGACCGAGAGGAGCAG < 41bp 0.485919492779227 0.785993867190617 0.101062834 0.12253249 prediction 0.571987734381235 Functional Gain - PCDHB1 ENSG00000171815 CDS Human protein_coding chr5:140431650 chr5:140431651 nonsynonymous SNV 0.957 2 22 hm5C_associated_SNPs_103159 0 0 0 0 0 unknown 0.500231645042386 0.500231623421159 0 0 hm5C_site_56304 DeepMRMD:0;iRNA_m5C:0 56305 chr11 123886351 123886351 1 + C A UCEC 123886347 + 123886327 123886367 41 CCCCATGCCCCAGGGCTGGACGCCCTCCTCTTTGGAATCTT CCCCATGCCCCAGGGCTGGACGCCATCCTCTTTGGAATCTT < 41bp 0.405911067415937 0.785986542788936 0.087566435 0.28527707 prediction 0.571973085577873 Functional Gain - OR10G4 ENSG00000254737 CDS Human protein_coding chr11:123886347 chr11:123886351 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103160 0 0 0 0 0 unknown 0.500231643921092 0.500231643921091 0 0 hm5C_site_56305 DeepMRMD:0;iRNA_m5C:0 56306 chrX 140995215 140995215 1 + T A STAD 140995211 + 140995191 140995231 41 TGAGGGGATGCACTCCCAATCTCCTCTCCAGAGTCCTGAGA TGAGGGGATGCACTCCCAATCTCCACTCCAGAGTCCTGAGA < 41bp 0.465116794740579 0.785970434591411 0.028349161 0.9341073 prediction 0.571940869182823 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140995211 chrX:140995215 synonymous SNV . 0 25 hm5C_associated_SNPs_103161 0 0 0 0 0 exosome 0.500231643457617 0.500231634965279 0.8682146 0 hm5C_site_56306 DeepMRMD:0.8682146;iRNA_m5C:0 56307 chr18 12254395 12254395 1 + C A rs141822984 12254391 + 12254371 12254411 41 GGGATCCGCGCCATGGAGGCCGCCCGGGACTATGCAGGAGC GGGATCCGCGCCATGGAGGCCGCCAGGGACTATGCAGGAGC < 41bp 0.411444853876789 0.785962165100759 0.32643124 0.63254285 prediction 0.571924330201518 Functional Gain - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12254391 chr18:12254395 synonymous SNV . 0 25 hm5C_associated_SNPs_103162 0 0 0 0 0 unknown 0.500231649702756 0.500231647515983 0.2650857 0 hm5C_site_56307 DeepMRMD:0.2650857;iRNA_m5C:0 56308 chr19 15839715 15839715 1 + C G LUAD 15839714 + 15839694 15839734 41 GTCCTCACGCCCTTCCTCAGCCCCATCATCTTCAGCCTCAG GTCCTCACGCCCTTCCTCAGCGCCATCATCTTCAGCCTCAG < 41bp 0.509456920028243 0.795409745336486 0.0904333 0.14892331 prediction 0.571905650616486 Functional Gain - OR10H2 ENSG00000171942 CDS Human protein_coding chr19:15839714 chr19:15839715 nonsynonymous SNV 0.969 2 22 hm5C_associated_SNPs_103163 0 0 0 0 0 unknown 0.50022966505502 0.500231643921095 0 3.95773215089434e-06 hm5C_site_56308 DeepMRMD:0;iRNA_m5C:3.95773215089434e-06 56309 chr19 51273984 51273984 1 + C G LUAD 51273983 + 51273963 51274003 41 TCTGAGGAGGTGGGGTCCCTCCGCCCACTGACTGTGGTTAT TCTGAGGAGGTGGGGTCCCTCGGCCCACTGACTGTGGTTAT < 41bp 0.507901921942013 0.793853345051078 0.3004502 0.75969374 prediction 0.57190284621813 Functional Gain - GPR32 ENSG00000142511 CDS Human protein_coding chr19:51273983 chr19:51273984 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_103164 0 0 0 0 0 unknown 0.500231643869922 0.500231641384127 0.51938748 0 hm5C_site_56309 DeepMRMD:0.51938748;iRNA_m5C:0 56310 chr11 72404357 72404357 1 + C A rs148697761 72404353 + 72404333 72404373 41 TGCCCACCCTGGGGCAGAACCCAGCGGGGCCACTTACCCGG TGCCCACCCTGGGGCAGAACCCAGAGGGGCCACTTACCCGG < 41bp 0.588759246466543 0.874706559976123 0.6097857 0.9242966 prediction 0.57189462701916 Functional Gain - ARAP1 ENSG00000256007 ncRNA_intronic Human antisense chr11:72404353 chr11:72404357 . . 0 25 hm5C_associated_SNPs_103165 0 0 0 0 0 Nucleus 0.500231643905963 0.500231644457263 0.6290218 1.10260023333808e-09 hm5C_site_56310 DeepMRMD:0.6290218;iRNA_m5C:1.10260023333808e-09 56311 chr5 140783117 140783117 1 + C A UCEC 140783113 + 140783093 140783133 41 CCAGAGCTGGTGCTGGAGCGCGCCCTGGACAGGGAGGAGGC CCAGAGCTGGTGCTGGAGCGCGCCATGGACAGGGAGGAGGC < 41bp 0.391241335158147 0.785922641538686 0.06385288 0.14899108 prediction 0.571845283077373 Functional Gain - PCDHGA9 ENSG00000261934 CDS Human protein_coding chr5:140783113 chr5:140783117 nonsynonymous SNV 0.855 2 25 hm5C_associated_SNPs_103166 0 0 0 0 0 exosome 0.500231643921092 0.500231643593065 0 0 hm5C_site_56311 DeepMRMD:0;iRNA_m5C:0 56312 chr1 152784960 152784960 1 + C A SKCM 152784956 + 152784936 152784976 41 AGAACCAGCAGCAGTGCCAGCCCCCTCCCAAGTGCATCCCC AGAACCAGCAGCAGTGCCAGCCCCATCCCAAGTGCATCCCC < 41bp 0.383642163805069 0.785916715963522 0.11501467 0.20854908 prediction 0.571833431927044 Functional Gain - LCE1B ENSG00000196734 CDS Human protein_coding chr1:152784956 chr1:152784960 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103167 0 0 0 0 0 unknown 0.500231643948989 0.500231643921072 0 0 hm5C_site_56312 DeepMRMD:0;iRNA_m5C:0 56313 chr17 9792877 9792877 1 + C A STAD 9792873 + 9792853 9792893 41 ACAGTGGGCGGCTCCTACATCTAGCCATGCGAGGTCTTGGG ACAGTGGGCGGCTCCTACATCTAGACATGCGAGGTCTTGGG < 41bp 0.613691465581165 0.899598464713309 0.4113297 0.5276318 prediction 0.571813998264286 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9792873 chr17:9792877 nonsynonymous SNV 0.033 1 25 hm5C_associated_SNPs_103168 0 0 0 0 0 nucleus 0.500231664479501 0.500231641247502 0.0552636 0 hm5C_site_56313 DeepMRMD:0.0552636;iRNA_m5C:0 56314 chr17 7919550 7919550 1 + C A ESCA 7919546 + 7919526 7919566 41 AAGGGCGCCGAGGACACTTTCTGGCTAGTGGGCAGACGCGG AAGGGCGCCGAGGACACTTTCTGGATAGTGGGCAGACGCGG < 41bp 0.621798317328734 0.90767994034921 0.4440392 0.6190403 prediction 0.571763246040952 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7919546 chr17:7919550 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_103169 0 0 0 0 2 exosome 0.500231644035075 0.500231646544023 0.2380806 5.0178967647696e-09 hm5C_site_56314 DeepMRMD:0.2380806;iRNA_m5C:5.0178967647696e-09 56315 chr1 47610318 47610318 1 + T A COAD 47610314 + 47610294 47610334 41 GACACCACAGCCAGTGGGATCTCCTGGATCCTCTATGCTCT GACACCACAGCCAGTGGGATCTCCAGGATCCTCTATGCTCT < 41bp 0.450805621866233 0.785881117328395 0.03389576 0.9536452 prediction 0.571762234656791 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610314 chr1:47610318 nonsynonymous SNV 0.129 3 25 hm5C_associated_SNPs_103170 0 0 0 0 2 exosome 0.500233408040944 0.500232154439564 0.9072904 0 hm5C_site_56315 DeepMRMD:0.9072904;iRNA_m5C:0 56316 chr7 26191946 26191946 1 + T G rs578183074 26191943 + 26191923 26191963 41 GCCGGCTGCCGAGGGAACGCCTTTGTGCCCGGTGCTGGGAA GCCGGCTGCCGAGGGAACGCCTTGGTGCCCGGTGCTGGGAA < 41bp 0.563053664098102 0.848928137907278 0.107305974 0.240192 prediction 0.571748947618353 Functional Gain - NFE2L3 ENSG00000050344 UTR5 Human protein_coding chr7:26191943 chr7:26191946 . . 0 24 hm5C_associated_SNPs_103171 0 0 1 0 0 Ribosome 0.500231644058295 0.500231643921092 0 0 hm5C_site_56316 DeepMRMD:0;iRNA_m5C:0 56317 chr20 57876486 57876486 1 + C G BLCA 57876482 + 57876462 57876502 41 CAGGATTCGTGCCTTGCTCCCAGTCTGGGGATGCTGGCAGG CAGGATTCGTGCCTTGCTCCCAGTGTGGGGATGCTGGCAGG < 41bp 0.500572880462753 0.786437601511924 0.5688775 0.7676481 prediction 0.571729442098341 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57876482 chr20:57876486 nonsynonymous SNV 0.903 2 25 hm5C_associated_SNPs_103172 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0.3975412 0 hm5C_site_56317 DeepMRMD:0.3975412;iRNA_m5C:0 56318 chr1 212799448 212799448 1 + G T KIRP 212799452 - 212799432 212799472 41 TCAGCGCTGGCCTGGGTTCGCTCCCTTCCATGCTGTCCACT TCAGCGCTGGCCTGGGTTCGCTCCATTCCATGCTGTCCACT < 41bp 0.410556043914753 0.785863184383802 0.20544389 0.91812384 prediction 0.571726368767605 Functional Gain - FAM71A ENSG00000162771 CDS Human protein_coding chr1:212799452 chr1:212799448 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103173 0 0 0 0 0 exosome 0.500231643917108 0.500231589062697 0.83624768 0 hm5C_site_56318 DeepMRMD:0.83624768;iRNA_m5C:0 56319 chr1 22141121 22141121 1 + C G LUAD 22141120 + 22141100 22141140 41 TCCTCCCCGGCCCCGGCCGACCCGTGCGCCCCCGGCTCCTA TCCTCCCCGGCCCCGGCCGACGCGTGCGCCCCCGGCTCCTA < 41bp 0.532048224118993 0.817892189746132 0.03756559 0.5117507 prediction 0.571687931254277 Functional Gain - LDLRAD2 ENSG00000187942 CDS Human protein_coding chr1:22141120 chr1:22141121 nonsynonymous SNV 0.110 0 22 hm5C_associated_SNPs_103174 0 0 0 0 0 chromatin 0.500231644852489 0.500231643999451 0.0235014 0 hm5C_site_56319 DeepMRMD:0.0235014;iRNA_m5C:0 56320 chr2 237489297 237489297 1 + C G rs35767135 237489296 + 237489276 237489316 41 CATCGGCATGATTGCCAACTCCGTGGTGGTCTGGGTGAATA CATCGGCATGATTGCCAACTCGGTGGTGGTCTGGGTGAATA < 41bp 0.528074291233151 0.813896869653271 0.39501408 0.7089378 prediction 0.571645156840239 Functional Gain - ACKR3 ENSG00000144476 CDS Human protein_coding chr2:237489296 chr2:237489297 synonymous SNV . 0 22 hm5C_associated_SNPs_103175 0 0 0 0 0 Nucleus 0.500231984201845 0.500231643217486 0.4178756 0 hm5C_site_56320 DeepMRMD:0.4178756;iRNA_m5C:0 56321 chr11 709566 709566 1 + C G BLCA 709565 + 709545 709585 41 CCCTGCAGTGGCAGCCTGGGCCGGTCCGACGGTGTGGCCAA CCCTGCAGTGGCAGCCTGGGCGGGTCCGACGGTGTGGCCAA < 41bp 0.49697599802364 0.785789809910624 0.12475374 0.7270545 prediction 0.571579619821248 Functional Gain - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:709565 chr11:709566 nonsynonymous SNV 0.987 2 22 hm5C_associated_SNPs_103176 0 0 1 0 2 Cytosol 0.500231653859967 0.500231643921241 0.454109 0 hm5C_site_56321 DeepMRMD:0.454109;iRNA_m5C:0 56322 chr16 20439186 20439186 1 + C A ESCA 20439182 + 20439162 20439202 41 GGCTGCTTGTGCAGGAGGATCTGACCAGGTACAGCCCGTCT GGCTGCTTGTGCAGGAGGATCTGAACAGGTACAGCCCGTCT < 41bp 0.374177509717557 0.785772234044451 0.32683092 0.38882446 prediction 0.571544468088902 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20439182 chr16:20439186 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103177 0 0 0 0 2 cytosol 0.500231661758194 0.500231643921092 0 0 hm5C_site_56322 DeepMRMD:0;iRNA_m5C:0 56323 chr17 32954025 32954025 1 + C A LUAD 32954021 + 32954001 32954041 41 TGCTCAGCATCCTCCTCTATCTGGCCCCCAACTCCTCCTCG TGCTCAGCATCCTCCTCTATCTGGACCCCAACTCCTCCTCG < 41bp 0.623186962327002 0.908949460307027 0.91200167 0.91674685 prediction 0.57152499596005 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32954021 chr17:32954025 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_103178 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.00949036000000003 0 hm5C_site_56323 DeepMRMD:0.00949036000000003;iRNA_m5C:0 56324 chr17 51901178 51901178 1 + C G LUAD 51901177 + 51901157 51901197 41 CTCACTCGCTACCTGCAGAACCAGACCTTCTGCTTCGACCA CTCACTCGCTACCTGCAGAACGAGACCTTCTGCTTCGACCA < 41bp 0.485109942626587 0.785753969142775 0.32511026 0.3740446 prediction 0.57150793828555 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901177 chr17:51901178 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_103179 0 0 0 0 0 exosome 0.500231643879163 0.50023164392061 0 8.28952462228472e-11 hm5C_site_56324 DeepMRMD:0;iRNA_m5C:8.28952462228472e-11 56325 chr9 35842531 35842531 1 + C G rs143767690 35842530 + 35842510 35842550 41 GCCTGGGACCACGTCCCCACCCGAGCACTGCTGGCCAGTGC GCCTGGGACCACGTCCCCACCGGAGCACTGCTGGCCAGTGC < 41bp 0.544275171178558 0.830023506058749 0.4330189 0.9129696 prediction 0.571496669760383 Functional Gain - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35842530 chr9:35842531 synonymous SNV . 0 22 hm5C_associated_SNPs_103180 0 0 1 0 0 cytosol 0.500231566897758 0.500231643921093 0.8259392 1.54046669198493e-07 hm5C_site_56325 DeepMRMD:0.8259392;iRNA_m5C:1.54046669198493e-07 56326 chrX 34961812 34961812 1 + C G LUAD 34961811 + 34961791 34961831 41 CCATCTCTGCCCGGAGCCTCCCGAGACTCGCGTATCTCATC CCATCTCTGCCCGGAGCCTCCGGAGACTCGCGTATCTCATC < 41bp 0.475755012802037 0.785737129838207 0.77407646 0.90271163 prediction 0.571474259676414 Functional Gain - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961811 chrX:34961812 synonymous SNV . 0 22 hm5C_associated_SNPs_103181 0 0 0 0 0 unknown 0.500231638283757 0.500231459804227 0.25727034 0 hm5C_site_56326 DeepMRMD:0.25727034;iRNA_m5C:0 56327 chr2 219000221 219000221 1 + T A LUAD 219000217 + 219000197 219000237 41 CTGATCATGCTGTTCTGCTACGGATTCACCCTGCGTACGCT CTGATCATGCTGTTCTGCTACGGAATCACCCTGCGTACGCT < 41bp 0.536298500102346 0.82203548563513 0.14739653 0.4346215 prediction 0.571473971065567 Functional Gain - CXCR2 ENSG00000180871 CDS Human protein_coding chr2:219000217 chr2:219000221 nonsynonymous SNV 0.018 0 25 hm5C_associated_SNPs_103182 0 0 0 0 0 exosome 0.500231643866966 0.500231643921075 0 1.08216990923893e-10 hm5C_site_56327 DeepMRMD:0;iRNA_m5C:1.08216990923893e-10 56328 chr20 21283980 21283980 1 + C A rs559843409 21283976 + 21283956 21283996 41 GCTGGTGCCCTCTGCCGCTGCTCCCGTCTCTTTGGTTACGC GCTGGTGCCCTCTGCCGCTGCTCCAGTCTCTTTGGTTACGC < 41bp 0.433863754583111 0.78573501708722 0.10254583 0.6321639 prediction 0.571470034174441 Functional Gain - XRN2 ENSG00000088930 UTR5 Human protein_coding chr20:21283976 chr20:21283980 . . 0 25 hm5C_associated_SNPs_103183 0 0 1 0 0 Cytosol 0.500231643999168 0.50023251977 0.2643278 1.75154166415226e-06 hm5C_site_56328 DeepMRMD:0.2643278;iRNA_m5C:1.75154166415226e-06 56329 chr14 69925177 69925177 1 + C A UCEC 69925173 + 69925153 69925193 41 ATGTTGCCACAGTACATGTCCTCCCTGAGGTGGGCGGAATA ATGTTGCCACAGTACATGTCCTCCATGAGGTGGGCGGAATA < 41bp 0.376648728461496 0.785730329480046 0.11261785 0.9236097 prediction 0.571460658960092 Functional Gain - SLC39A9 ENSG00000029364 CDS Human protein_coding chr14:69925173 chr14:69925177 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103184 0 0 1 0 1 Ribosome 0.500231643921077 0.500231643921117 0.8472194 7.92699239582362e-14 hm5C_site_56329 DeepMRMD:0.8472194;iRNA_m5C:7.92699239582362e-14 56330 chr11 60637235 60637235 1 + C G rs149325402 60637231 + 60637211 60637251 41 GGCTCTGGCCATGCCTTTCCCAGCCCACTGGACCCAGGGCA GGCTCTGGCCATGCCTTTCCCAGCGCACTGGACCCAGGGCA < 41bp 0.518614310829213 0.804342458514234 0.27894306 0.5498687 prediction 0.571456295370042 Functional Gain - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60637231 chr11:60637235 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_103185 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0997374 0 hm5C_site_56330 DeepMRMD:0.0997374;iRNA_m5C:0 56331 chr6 21594876 21594876 1 + C A UCEC 21594872 + 21594852 21594892 41 AATCGCCTCCTCCCCCACGCCCGGCTCCACCGCCTCCACGG AATCGCCTCCTCCCCCACGCCCGGATCCACCGCCTCCACGG < 41bp 0.567269904938552 0.852997705776182 0.14221305 0.28960374 prediction 0.571455601675261 Functional Gain - SOX4 ENSG00000124766 CDS Human protein_coding chr6:21594872 chr6:21594876 synonymous SNV . 0 25 hm5C_associated_SNPs_103186 0 0 1 0 0 Nucleus 0.500409886105304 0.500364173839268 0 0 hm5C_site_56331 DeepMRMD:0;iRNA_m5C:0 56332 chr7 114271723 114271723 1 + T A LUAD 114271719 + 114271699 114271739 41 TCAGGGACTCATCTCCATTCCACCTGGCCAGGCAGCACTTC TCAGGGACTCATCTCCATTCCACCAGGCCAGGCAGCACTTC < 41bp 0.514850172448442 0.800571551069324 0.44189858 0.821213 prediction 0.571442757241764 Functional Gain - FOXP2 ENSG00000128573 CDS Human protein_coding chr7:114271719 chr7:114271723 synonymous SNV . 0 25 hm5C_associated_SNPs_103187 0 0 0 0 0 Cytosol 0.500231784017562 0.500232115956571 0.642426 6.63878017892472e-07 hm5C_site_56332 DeepMRMD:0.642426;iRNA_m5C:6.63878017892472e-07 56333 chr20 13279806 13279806 1 + C A LUAD 13279802 + 13279782 13279822 41 GCTGGAGATCTACAAGCCCACTGCCCGGTACTGCATCCGCT GCTGGAGATCTACAAGCCCACTGCACGGTACTGCATCCGCT < 41bp 0.37948095386441 0.785715572938831 0.20101687 0.37091297 prediction 0.571431145877663 Functional Gain - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13279802 chr20:13279806 synonymous SNV . 0 25 hm5C_associated_SNPs_103188 0 0 0 0 0 exosome 0.500231662119353 0.50023164390797 0 0 hm5C_site_56333 DeepMRMD:0;iRNA_m5C:0 56334 chr19 57157140 57157140 1 + C G rs61749984 57157139 + 57157119 57157159 41 CTGGGAGAAGCCTCCTCATCCCGCCTGCACCAAAGACTGGG CTGGGAGAAGCCTCCTCATCCGGCCTGCACCAAAGACTGGG < 41bp 0.515419454256922 0.801132507812844 0.18279433 0.5107283 prediction 0.571426107111844 Functional Gain - SMIM17 ENSG00000268182 CDS Human protein_coding chr19:57157139 chr19:57157140 synonymous SNV . 0 22 hm5C_associated_SNPs_103189 0 0 0 1 1 exosome 0.500231643921093 0.500231643921092 0.0214566 0 hm5C_site_56334 DeepMRMD:0.0214566;iRNA_m5C:0 56335 chrX 56590814 56590814 1 + C G BLCA 56590813 + 56590793 56590833 41 AACTTCTCTGAGCTCCAGAGCCAGATGCAGCAGCAGCTTAT AACTTCTCTGAGCTCCAGAGCGAGATGCAGCAGCAGCTTAT < 41bp 0.524241702194712 0.809953869554243 0.90394205 0.92188334 prediction 0.571424334719062 Functional Gain - UBQLN2 ENSG00000188021 CDS Human protein_coding chrX:56590813 chrX:56590814 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_103190 0 0 1 0 0 nucleus 0.500222032960011 0.500235833653504 0.03588258 2.76013869842107e-05 hm5C_site_56335 DeepMRMD:0.03588258;iRNA_m5C:2.76013869842107e-05 56336 chr17 7577569 7577569 1 + A T HNSC 7577573 - 7577553 7577593 41 ACCACCATCCACTACAACTACATGTGTAACAGTTCCTGCAT ACCACCATCCACTACAACTACATGAGTAACAGTTCCTGCAT < 41bp 0.502805844193788 0.78851057995453 0.27352014 0.32132304 prediction 0.571409471521483 Functional Gain - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577573 chr17:7577569 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_103191 0 0 1 0 1 Ribosome 0.500231605993096 0.500231643746572 0 7.55069526903185e-08 hm5C_site_56336 DeepMRMD:0;iRNA_m5C:7.55069526903185e-08 56337 chr6 89794840 89794840 1 + T G rs567962968 89794837 + 89794817 89794857 41 ACTCCAGCCTGGGTAACAGACGCTGTCTCAAAAAAAAGGCC ACTCCAGCCTGGGTAACAGACGCGGTCTCAAAAAAAAGGCC < 41bp 0.504321082464467 0.790009496352179 0.23813832 0.44126457 prediction 0.571376827775425 Functional Gain - PNRC1 ENSG00000146278 UTR3 Human protein_coding chr6:89794837 chr6:89794840 . . 0 24 hm5C_associated_SNPs_103192 0 0 0 0 0 Cytosol 0.500231643912516 0.500231643921093 0 1.71545000426931e-11 hm5C_site_56337 DeepMRMD:0;iRNA_m5C:1.71545000426931e-11 56338 chr10 77161677 77161677 1 + C G rs376626822 77161676 + 77161656 77161696 41 CGCTGCCAGGACTCTCAGTGCCGGTTTTAATGGGCAGCTCC CGCTGCCAGGACTCTCAGTGCGGGTTTTAATGGGCAGCTCC < 41bp 0.497901699067094 0.785676017016942 0.46686307 0.8402147 prediction 0.571352034033884 Functional Gain - ZNF503-AS2 ENSG00000237149 ncRNA_exonic Human antisense chr10:77161676 chr10:77161677 . . 0 22 hm5C_associated_SNPs_103193 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0.6804294 0 hm5C_site_56338 DeepMRMD:0.6804294;iRNA_m5C:0 56339 chr16 67943314 67943314 1 + C G LAML 67943313 + 67943293 67943333 41 TCACACACCGAGACCTCAAACCTGAGAATCTGCTCTACTAC TCACACACCGAGACCTCAAACGTGAGAATCTGCTCTACTAC < 41bp 0.480935070650258 0.785671328018207 0.435006 0.75933254 prediction 0.571342656036414 Functional Gain - PSKH1 ENSG00000159792 CDS Human protein_coding chr16:67943313 chr16:67943314 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_103194 0 0 1 0 0 Cytosol 0.500272138103135 0.500232594105811 0.51866508 0 hm5C_site_56339 DeepMRMD:0.51866508;iRNA_m5C:0 56340 chr15 23811081 23811081 1 + C A HNSC 23811077 + 23811057 23811097 41 CTCCAGATTCAGCCCTGCCACATGCGGCAAGGGGCTGGGCC CTCCAGATTCAGCCCTGCCACATGAGGCAAGGGGCTGGGCC < 41bp 0.592300797521803 0.877969995549795 0.9015683 0.8995583 prediction 0.571338396055982 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811077 chr15:23811081 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103195 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921093 0 4.44089209850063e-16 hm5C_site_56340 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 56341 chr20 48491289 48491289 1 + C A PCPG 48491285 + 48491265 48491305 41 GGCATCGTGATGTCCCACTACACGCACCATAACCTCTCCCC GGCATCGTGATGTCCCACTACACGAACCATAACCTCTCCCC < 41bp 0.366976407308711 0.785643855658757 0.11361948 0.20882997 prediction 0.571287711317514 Functional Gain - SLC9A8 ENSG00000197818 CDS Human protein_coding chr20:48491285 chr20:48491289 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_103196 0 0 1 0 2 Nucleus 0.500231643921236 0.500231643921092 0 0 hm5C_site_56341 DeepMRMD:0;iRNA_m5C:0 56342 chr1 161127927 161127927 1 + C G OV 161127926 + 161127906 161127946 41 CATAGGGGTGGCAAAATATGCCTGACGGATCATTTCAAACC CATAGGGGTGGCAAAATATGCGTGACGGATCATTTCAAACC < 41bp 0.524516294663035 0.81015353762365 0.080147505 0.1968256 prediction 0.57127448592123 Functional Gain - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161127926 chr1:161127927 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_103197 0 0 1 0 2 Ribosome 0.500231643935178 0.50023164392197 0 0 hm5C_site_56342 DeepMRMD:0;iRNA_m5C:0 56343 chr1 47614377 47614377 1 + C G COAD 47614376 + 47614356 47614396 41 GATCCCACCAGGATCCCCATCCCCATGGCACGACTTGTGTT GATCCCACCAGGATCCCCATCGCCATGGCACGACTTGTGTT < 41bp 0.506233763242845 0.791860385444399 0.169052 0.7561574 prediction 0.571253244403107 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47614376 chr1:47614377 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_103198 0 0 0 0 0 exosome 0.500231643921108 0.500231643933238 0.5123148 2.42608155787138e-11 hm5C_site_56343 DeepMRMD:0.5123148;iRNA_m5C:2.42608155787138e-11 56344 chr1 111434082 111434082 1 + T A UCEC 111434078 + 111434058 111434098 41 AAGTATGTCCTGTTTTTCTTCAACTTGCTCTTTTGGGTAAG AAGTATGTCCTGTTTTTCTTCAACATGCTCTTTTGGGTAAG < 41bp 0.475705108193197 0.785619339473671 0.16312861 0.068525195 prediction 0.571238678947342 Functional Gain - CD53 ENSG00000143119 CDS Human protein_coding chr1:111434078 chr1:111434082 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103199 0 0 1 0 2 Endoplasmic reticulum 0.500231643887062 0.500231614984828 0 0 hm5C_site_56344 DeepMRMD:0;iRNA_m5C:0 56345 chr19 49920708 49920708 1 + T A rs377124890 49920704 + 49920684 49920724 41 CTCTCTGTCCTGCTGCTTGGCCCGTCCCCACCTCCCACCTG CTCTCTGTCCTGCTGCTTGGCCCGACCCCACCTCCCACCTG < 41bp 0.490468685573103 0.785589721051511 0.039118946 0.085950345 prediction 0.571179442103023 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49920704 chr19:49920708 nonsynonymous SNV 0.970 1 25 hm5C_associated_SNPs_103200 0 0 0 0 0 nucleolus 0.500231643917106 0.500231643895873 0 0 hm5C_site_56345 DeepMRMD:0;iRNA_m5C:0 56346 chr11 59245074 59245074 1 + C A LUAD 59245070 + 59245050 59245090 41 ACCTGTGAATCTCGCCTTCACACGCCCATGTATTTTTTGCT ACCTGTGAATCTCGCCTTCACACGACCATGTATTTTTTGCT < 41bp 0.405152579329794 0.785575583354952 0.018544972 0.062790215 prediction 0.571151166709903 Functional Gain - OR4D10 ENSG00000254466 CDS Human protein_coding chr11:59245070 chr11:59245074 nonsynonymous SNV 0.484 2 25 hm5C_associated_SNPs_103201 0 0 0 0 0 unknown 0.500231644704043 0.500231644281338 0 0 hm5C_site_56346 DeepMRMD:0;iRNA_m5C:0 56347 chr1 156255759 156255759 1 + T A LIHC 156255755 + 156255735 156255775 41 CTGCGCTGCGGGGTCTTTGCCACCTTCCCCATTGTGCTGGG CTGCGCTGCGGGGTCTTTGCCACCATCCCCATTGTGCTGGG < 41bp 0.556617183742048 0.842183515261216 0.30809736 0.15123639 prediction 0.571132663038335 Functional Gain - TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255755 chr1:156255759 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_103202 0 0 0 0 1 cytosol 0.500231643920787 0.50023164392081 0 4.57411886145564e-14 hm5C_site_56347 DeepMRMD:0;iRNA_m5C:4.57411886145564e-14 56348 chr1 1263084 1263084 1 + C A HNSC 1263080 + 1263060 1263100 41 GGCGAGGCCCTCCCCTTCATCCAGCGTGTCTACAACGTCTC GGCGAGGCCCTCCCCTTCATCCAGAGTGTCTACAACGTCTC < 41bp 0.412797961213593 0.785562944591759 0.57634634 0.66218644 prediction 0.571125889183518 Functional Gain - CPTP ENSG00000224051 CDS Human protein_coding chr1:1263080 chr1:1263084 nonsynonymous SNV 0.114 0 25 hm5C_associated_SNPs_103203 0 0 0 0 0 Ribosome 0.500231643785661 0.500231644008081 0.1716802 4.4483883243629e-10 hm5C_site_56348 DeepMRMD:0.1716802;iRNA_m5C:4.4483883243629e-10 56349 chr3 108572553 108572553 1 + T A UCEC 108572549 + 108572529 108572569 41 AAAGCCCAGGAAACAGAATACTCATTTCTCAGACAAGGATG AAAGCCCAGGAAACAGAATACTCAATTCTCAGACAAGGATG < 41bp 0.528547098347955 0.814105498777853 0.1826258 0.30875027 prediction 0.571116800859795 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108572549 chr3:108572553 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_103204 0 0 0 0 1 exosome 0.500231643828505 0.50023164393468 0 2.1234902725098e-10 hm5C_site_56349 DeepMRMD:0;iRNA_m5C:2.1234902725098e-10 56350 chr1 202991994 202991994 1 + T G CESC 202991991 + 202991971 202992011 41 TTTCCATTTCAGTTTACTATCAATGTGAGCACGGACATGCG TTTCCATTTCAGTTTACTATCAAGGTGAGCACGGACATGCG < 41bp 0.409556296431346 0.785533611287051 0.18052411 0.92251873 prediction 0.571067222574103 Functional Gain - TMEM183A;TMEM183B ENSG00000163444 CDS Human protein_coding chr1:202991991 chr1:202991994 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_103205 0 0 1 2 1 unknown 0.500234026508463 0.500231643926148 0.84503746 0 hm5C_site_56350 DeepMRMD:0.84503746;iRNA_m5C:0 56351 chr10 129845728 129845728 1 + C A UCEC 129845724 + 129845704 129845744 41 CCGCTGCTGCTCCTCCTCCTCGTGCTCCTTCTCGCCGCCTA CCGCTGCTGCTCCTCCTCCTCGTGATCCTTCTCGCCGCCTA < 41bp 0.613900194992383 0.899431925179864 0.19452775 0.4274421 prediction 0.57106346037496 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129845724 chr10:129845728 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_103206 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643800642 0 0 hm5C_site_56351 DeepMRMD:0;iRNA_m5C:0 56352 chr3 118905609 118905609 1 + T A SARC 118905605 + 118905585 118905625 41 GAAGATGGCCAAAGACAACTCAACTGTTCGTTGCTTCCAGG GAAGATGGCCAAAGACAACTCAACAGTTCGTTGCTTCCAGG < 41bp 0.484008979344722 0.785476262835123 0.12671196 0.16440904 prediction 0.570952525670247 Functional Gain - UPK1B ENSG00000114638 CDS Human protein_coding chr3:118905605 chr3:118905609 synonymous SNV . 0 25 hm5C_associated_SNPs_103207 0 0 0 0 1 exosome 0.500231644290041 0.500231648217217 0 7.85435139150081e-09 hm5C_site_56352 DeepMRMD:0;iRNA_m5C:7.85435139150081e-09 56353 chr5 35873713 35873713 1 + T A LUAD 35873709 + 35873689 35873729 41 CTTCTGGAGTGAATGGAGTCCAAGTTATTACTTCAGAACTC CTTCTGGAGTGAATGGAGTCCAAGATATTACTTCAGAACTC < 41bp 0.512875833677331 0.79832845613846 0.1848943 0.29839158 prediction 0.570905244922258 Functional Gain - IL7R ENSG00000168685 CDS Human protein_coding chr5:35873709 chr5:35873713 nonsynonymous SNV 0.468 3 25 hm5C_associated_SNPs_103208 0 0 0 0 1 Endoplasmic reticulum 0.500231644617969 0.500231645677629 0 2.11932071891852e-09 hm5C_site_56353 DeepMRMD:0;iRNA_m5C:2.11932071891852e-09 56354 chr1 19952903 19952903 1 + T A rs72959490 19952899 + 19952879 19952919 41 AGGAGCAGGAGCAGTGACTTCACCTGAGAACATCCCAGCGG AGGAGCAGGAGCAGTGACTTCACCAGAGAACATCCCAGCGG < 41bp 0.529243706293035 0.814692041807868 0.307244 0.446818 prediction 0.570896671029665 Functional Gain - MINOS1 ENSG00000270136;ENSG00000173436;ENSG00000270136 UTR5;UTR3 Human other chr1:19952899 chr1:19952903 . . 0 25 hm5C_associated_SNPs_103209 0 0 1 4 1 Nucleus 0.50023164390602 0.500231641775072 0 0 hm5C_site_56354 DeepMRMD:0;iRNA_m5C:0 56355 chr16 77896678 77896678 1 + C G LUAD 77896677 + 77896657 77896697 41 GCTCAGCTGTGTTCCACTGTCCCCAACGTGACTGTCTTTGG GCTCAGCTGTGTTCCACTGTCGCCAACGTGACTGTCTTTGG < 41bp 0.509800249679823 0.795211549564837 0.06763342 0.49425572 prediction 0.570822599770028 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77896677 chr16:77896678 nonsynonymous SNV 0.983 1 22 hm5C_associated_SNPs_103210 0 0 0 0 0 Endoplasmic reticulum 0.500231783802615 0.500820166131451 0 0.00117676465767169 hm5C_site_56355 DeepMRMD:0;iRNA_m5C:0.00117676465767169 56356 chr15 40675061 40675061 1 + C G rs200505100 40675060 + 40675040 40675080 41 GCGGCTCCCGAAGCCCCGCCCCTGGACAGAGTTTTCCGTAC GCGGCTCCCGAAGCCCCGCCCGTGGACAGAGTTTTCCGTAC < 41bp 0.485241059768716 0.785402629496417 0.40532207 0.83613414 prediction 0.570805258992835 Functional Gain - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40675060 chr15:40675061 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_103211 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.67226828 0 hm5C_site_56356 DeepMRMD:0.67226828;iRNA_m5C:0 56357 chr1 156621255 156621255 1 + C A UCEC 156621251 + 156621231 156621271 41 CTTTCCTCCTGCCACAGACTCGGCCCAGCCTTCTGCCATCC CTTTCCTCCTGCCACAGACTCGGCACAGCCTTCTGCCATCC < 41bp 0.368738759069782 0.785371682833041 0.4772732 0.3362339 prediction 0.570743365666082 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156621251 chr1:156621255 synonymous SNV . 0 25 hm5C_associated_SNPs_103212 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921094 0 2.88657986402541e-15 hm5C_site_56357 DeepMRMD:0;iRNA_m5C:2.88657986402541e-15 56358 chr17 28887662 28887662 1 + T G UCEC 28887659 + 28887639 28887679 41 CTCTCGGGCTCACCCCGTGCCTGTGGGATATGTATTTGCTG CTCTCGGGCTCACCCCGTGCCTGGGGGATATGTATTTGCTG < 41bp 0.394051603144557 0.785336649527712 0.074450135 0.25325692 prediction 0.570673299055424 Functional Gain - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28887659 chr17:28887662 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_103213 0 0 0 0 2 exosome 0.500231643920693 0.500231643921093 0 8.00470800754738e-13 hm5C_site_56358 DeepMRMD:0;iRNA_m5C:8.00470800754738e-13 56359 chr16 88807442 88807442 1 + C A rs529268736 88807438 + 88807418 88807458 41 CGAGGACAGAGGCCCTGCTTCAGGCCCGTCGCTCCTGGGGT CGAGGACAGAGGCCCTGCTTCAGGACCGTCGCTCCTGGGGT < 41bp 0.555472345150657 0.840803906191012 0.90377116 0.9030775 prediction 0.57066312208071 Functional Gain - LOC100289580 ENSG00000224888 ncRNA_exonic Human antisense chr16:88807438 chr16:88807442 . . 0 25 hm5C_associated_SNPs_103214 0 0 0 0 0 unknown 0.500231643921088 0.500231643921092 0 9.10382880192628e-15 hm5C_site_56359 DeepMRMD:0;iRNA_m5C:9.10382880192628e-15 56360 chr2 220371465 220371465 1 + T G UCEC 220371462 + 220371442 220371482 41 CGAGGTGCTCATCCTGAACTCGATTGTTCTGCCACACAAGG CGAGGTGCTCATCCTGAACTCGAGTGTTCTGCCACACAAGG < 41bp 0.404903259596313 0.785324610095662 0.3888055 0.81647706 prediction 0.570649220191324 Functional Gain - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220371462 chr2:220371465 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_103215 0 0 1 0 1 Ribosome 0.500231643921084 0.500231640149825 0.63295412 0 hm5C_site_56360 DeepMRMD:0.63295412;iRNA_m5C:0 56361 chr4 4543887 4543887 1 + C G rs368617827 4543886 + 4543866 4543906 41 TTCCGGCCTCAGCCGGCGCACCTGGCGGAGGAGGAACCTCG TTCCGGCCTCAGCCGGCGCACGTGGCGGAGGAGGAACCTCG < 41bp 0.509153329403641 0.794452107351981 0.47496983 0.85028136 prediction 0.570597555896681 Functional Gain - STX18-AS1 ENSG00000247708 ncRNA_exonic Human antisense chr4:4543886 chr4:4543887 . . 0 22 hm5C_associated_SNPs_103216 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.70056272 0 hm5C_site_56361 DeepMRMD:0.70056272;iRNA_m5C:0 56362 chr9 135102354 135102354 1 + C A KIRC 135102350 + 135102330 135102370 41 AAGTGCAAGAAGAATTTCCGCACCCGGTCCTGGCGGGCCGG AAGTGCAAGAAGAATTTCCGCACCAGGTCCTGGCGGGCCGG < 41bp 0.386866391338211 0.785297384245759 0.19224891 0.2361857 prediction 0.570594768491517 Functional Gain - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135102350 chr9:135102354 synonymous SNV . 0 25 hm5C_associated_SNPs_103217 0 0 0 0 1 exosome 0.500231643921092 0.500231643921104 0 2.37587727269783e-14 hm5C_site_56362 DeepMRMD:0;iRNA_m5C:2.37587727269783e-14 56363 chr6 29408136 29408136 1 + C A BLCA 29408132 + 29408112 29408152 41 GCGCCACGGAGTGCTGCCTCCTGGCAGCCATGGCCTATGAC GCGCCACGGAGTGCTGCCTCCTGGAAGCCATGGCCTATGAC < 41bp 0.609293767996562 0.894590845369864 0.15730777 0.22392425 prediction 0.570594154746606 Functional Gain - OR10C1 ENSG00000206474 CDS Human protein_coding chr6:29408132 chr6:29408136 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_103218 0 0 0 0 0 unknown 0.500231643917991 0.500231643975803 0 1.15623066676562e-10 hm5C_site_56363 DeepMRMD:0;iRNA_m5C:1.15623066676562e-10 56364 chr8 27396375 27396375 1 + C G rs115498379 27396371 + 27396351 27396391 41 CATAGGGCTGACTCTAACCCCAGGCCTGAGCACACAGCCTG CATAGGGCTGACTCTAACCCCAGGGCTGAGCACACAGCCTG < 41bp 0.502000821276265 0.787289697496663 0.47935292 0.91216743 prediction 0.570577752440796 Functional Gain - EPHX2 ENSG00000120915 intronic Human protein_coding chr8:27396371 chr8:27396375 . . 0 25 hm5C_associated_SNPs_103219 0 0 0 0 0 Cytosol 0.500231643917725 0.500231643921092 0.82433486 6.73439082277127e-12 hm5C_site_56364 DeepMRMD:0.82433486;iRNA_m5C:6.73439082277127e-12 56365 chr1 196882003 196882003 1 + T A KIRC 196881999 + 196881979 196882019 41 AACAGCAGATGGAAATTCTTCAGGTTCAATTACATGTTTGC AACAGCAGATGGAAATTCTTCAGGATCAATTACATGTTTGC < 41bp 0.499989671318794 0.785280311095713 0.7482312 0.6763364 prediction 0.570560622191426 Functional Gain - CFHR4 ENSG00000134365 CDS Human protein_coding chr1:196881999 chr1:196882003 synonymous SNV . 0 25 hm5C_associated_SNPs_103220 0 0 0 0 1 cytosol 0.500231643816585 0.500231643906636 0 1.80101267233113e-10 hm5C_site_56365 DeepMRMD:0;iRNA_m5C:1.80101267233113e-10 56366 chr15 90610546 90610546 1 + C G rs79991946 90610545 + 90610525 90610565 41 AGGGGCAGCCATGGGAGAGCCCGAGCCACCAGGCCCCGACG AGGGGCAGCCATGGGAGAGCCGGAGCCACCAGGCCCCGACG < 41bp 0.533717099993047 0.81896278519333 0.91483724 0.9255617 prediction 0.570491370400565 Functional Gain - ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90610545 chr15:90610546 synonymous SNV . 0 22 hm5C_associated_SNPs_103221 0 0 0 0 0 Endoplasmic reticulum 0.500231676775373 0.500234122620757 0.0214489200000001 4.89169076711704e-06 hm5C_site_56366 DeepMRMD:0.0214489200000001;iRNA_m5C:4.89169076711704e-06 56367 chr9 137735786 137735786 1 + C A rs148823980 137735782 + 137735762 137735802 41 CCCCTTTGGGGAACCCTTTCCTGGCCATCGAGGTCGGGGGG CCCCTTTGGGGAACCCTTTCCTGGACATCGAGGTCGGGGGG < 41bp 0.467920680887382 0.785231982845991 0.2802151 0.36554486 prediction 0.570463965691983 Functional Gain - LOC101448202 ENSG00000130635 UTR3 Human protein_coding chr9:137735782 chr9:137735786 . . 0 25 hm5C_associated_SNPs_103222 1 0 0 0 0 unknown 0.500231643923025 0.500231770839454 0 2.53832859398173e-07 hm5C_site_56367 DeepMRMD:0;iRNA_m5C:2.53832859398173e-07 Ehlers-Danlos syndrome, type 7A Ehlers-Danlos syndrome, type 7A 56368 chr2 120005377 120005377 1 + C G rs140126918 120005376 + 120005356 120005396 41 CTGGGAGGTGGAGGCCATGCCCCTGCGCCTCCTCCCGGCCT CTGGGAGGTGGAGGCCATGCCGCTGCGCCTCCTCCCGGCCT < 41bp 0.530058159508498 0.815277076236329 0.28069347 0.40656233 prediction 0.570437833455662 Functional Gain - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120005376 chr2:120005377 synonymous SNV . 0 22 hm5C_associated_SNPs_103223 0 0 1 0 0 Ribosome 0.500231643909603 0.50023164341919 0 0 hm5C_site_56368 DeepMRMD:0;iRNA_m5C:0 56369 chr2 234835196 234835196 1 + C A LUAD 234835192 + 234835172 234835212 41 TCACAGAAAAGATGTCCTTTCGGGCAGCCAGGCTCAGCATG TCACAGAAAAGATGTCCTTTCGGGAAGCCAGGCTCAGCATG < 41bp 0.61019437602352 0.895370813709874 0.84302247 0.9214164 prediction 0.570352875372709 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234835192 chr2:234835196 nonsynonymous SNV 0.162 0 25 hm5C_associated_SNPs_103224 0 0 0 0 1 exosome 0.50023164392062 0.500231643921093 0.15678786 9.44799793956008e-13 hm5C_site_56369 DeepMRMD:0.15678786;iRNA_m5C:9.44799793956008e-13 56370 chr1 167088532 167088532 1 + C A LUAD 167088528 + 167088508 167088548 41 AGGCTGAAGAGGCTGGGAATCACCCACATTCTGAATGCTGC AGGCTGAAGAGGCTGGGAATCACCAACATTCTGAATGCTGC < 41bp 0.364389669002609 0.785176120090894 0.27010182 0.8313508 prediction 0.570352240181788 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167088528 chr1:167088532 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_103225 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231655789844 0.6627016 2.37375026301834e-08 hm5C_site_56370 DeepMRMD:0.6627016;iRNA_m5C:2.37375026301834e-08 56371 chr19 10132418 10132418 1 + C A COAD 10132414 + 10132394 10132434 41 GCTGCCTCCCAACGCGGGTGCGGCCAAGATGAGCAGAACAG GCTGCCTCCCAACGCGGGTGCGGCAAAGATGAGCAGAACAG < 41bp 0.394961523987539 0.785164724674316 0.47254083 0.5750145 prediction 0.570329449348633 Functional Gain - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10132414 chr19:10132418 nonsynonymous SNV 0.005 4 25 hm5C_associated_SNPs_103226 0 0 0 0 0 unknown 0.50023154672841 0.500231643295578 0.150029 1.93134336079481e-07 hm5C_site_56371 DeepMRMD:0.150029;iRNA_m5C:1.93134336079481e-07 56372 chr7 76871034 76871034 1 + T A LUAD 76871030 + 76871010 76871050 41 CACAAGAGTCAGAGGTCCAACTGCTACAGAATGCCAAACGT CACAAGAGTCAGAGGTCCAACTGCAACAGAATGCCAAACGT < 41bp 0.465339562921425 0.7851501462941 0.07770735 0.11440754 prediction 0.570300292588199 Functional Gain - CCDC146 ENSG00000135205 CDS Human protein_coding chr7:76871030 chr7:76871034 nonsynonymous SNV 0.345 4 25 hm5C_associated_SNPs_103227 0 0 0 0 1 exosome 0.500231643921091 0.500231643921092 0 2.66453525910038e-15 hm5C_site_56372 DeepMRMD:0;iRNA_m5C:2.66453525910038e-15 56373 chr14 74706435 74706435 1 + C G rs201395979 74706434 + 74706414 74706454 41 GGCAGCGCTCGACGGCCTGGCCCCCGGGCACTTGCTGGCGG GGCAGCGCTCGACGGCCTGGCGCCCGGGCACTTGCTGGCGG < 41bp 0.49362989202765 0.785109954832388 0.0973928 0.14199337 prediction 0.570219909664777 Functional Gain - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74706434 chr14:74706435 synonymous SNV . 0 22 hm5C_associated_SNPs_103228 0 0 0 0 0 exosome 0.50023164392106 0.500231644097704 0 3.53287843424255e-10 hm5C_site_56373 DeepMRMD:0;iRNA_m5C:3.53287843424255e-10 56374 chr19 54515354 54515354 1 + C A UCEC 54515350 + 54515330 54515370 41 GGCGTGGGGGCCGGCCTGATCCTGCTGTTGGGGGCCGGCTG GGCGTGGGGGCCGGCCTGATCCTGATGTTGGGGGCCGGCTG < 41bp 0.601084067601257 0.88619211714104 0.30731857 0.4046785 prediction 0.570216099079565 Functional Gain - CACNG6 ENSG00000130433 CDS Human protein_coding chr19:54515350 chr19:54515354 nonsynonymous SNV 0.548 0 25 hm5C_associated_SNPs_103229 0 0 0 0 0 exosome 0.500231643921463 0.50023210225379 0 9.16664654404542e-07 hm5C_site_56374 DeepMRMD:0;iRNA_m5C:9.16664654404542e-07 56375 chr1 220970095 220970095 1 + T A rs17850677 220970091 + 220970071 220970111 41 GCCTGGTGCACTTCGAGCCTCACATGCGACCGAGACGTCCT GCCTGGTGCACTTCGAGCCTCACAAGCGACCGAGACGTCCT < 41bp 0.457815067035807 0.785083103673336 0.20526162 0.35059243 prediction 0.570166207346671 Functional Gain - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970091 chr1:220970095 nonsynonymous SNV 0.851 3 25 hm5C_associated_SNPs_103230 0 0 0 0 1 Ribosome 0.500231667188631 0.500231643966059 0 0 hm5C_site_56375 DeepMRMD:0;iRNA_m5C:0 56376 chr18 7231432 7231432 1 + T G STAD 7231430 + 7231410 7231450 41 AAACTGACCCGGATCGTGGTCCTGAACTTGTGCGGGAACCG AAACTGACCCGGATCGTGGTCCGGAACTTGTGCGGGAACCG < 41bp 0.454638492079574 0.785077783120173 0.35317943 0.7427434 prediction 0.570155566240346 Functional Gain - LRRC30 ENSG00000206422 CDS Human protein_coding chr18:7231430 chr18:7231432 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_103231 0 0 0 0 0 unknown 0.500231743753301 0.500231630799679 0.4854868 0 hm5C_site_56376 DeepMRMD:0.4854868;iRNA_m5C:0 56377 chr9 130566803 130566803 1 + T G UCEC 130566801 + 130566781 130566821 41 GAGGACTTGGACCGGCTGAACATCATCCACGTCACTGGGAC GAGGACTTGGACCGGCTGAACAGCATCCACGTCACTGGGAC < 41bp 0.566878713048348 0.851948920781248 0.24250373 0.3243956 prediction 0.5701404154658 Functional Gain - FPGS ENSG00000136877 CDS Human protein_coding chr9:130566801 chr9:130566803 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_103232 0 0 1 0 2 Cytosol 0.500232309622126 0.500231643920516 0 0 hm5C_site_56377 DeepMRMD:0;iRNA_m5C:0 56378 chr8 74894281 74894281 1 + T A rs149063225 74894277 + 74894257 74894297 41 GCGGAGCTGTGGTCCACCTGCTCCTGCTCCTGACTCACTGC GCGGAGCTGTGGTCCACCTGCTCCAGCTCCTGACTCACTGC < 41bp 0.542379183493307 0.827448620778845 0.2478874 0.9009446 prediction 0.570138874571074 Functional Gain - TMEM70 ENSG00000175606 UTR3 Human protein_coding chr8:74894277 chr8:74894281 . . 0 25 hm5C_associated_SNPs_103233 1 0 0 0 0 Ribosome 0.500231643921093 0.500231643921083 0.8018892 0 hm5C_site_56378 DeepMRMD:0.8018892;iRNA_m5C:0 Mitochondrial Complex V (ATP Synthase) Deficiency, Nuclear Type Mitochondrial Complex V (ATP Synthase) Deficiency, Nuclear Type 56379 chr6 72892264 72892264 1 + T G LIHC 72892261 + 72892241 72892281 41 GCAGCGACCCGAACCTAGCTCGGTACCCGGTGAAACCGCCG GCAGCGACCCGAACCTAGCTCGGGACCCGGTGAAACCGCCG < 41bp 0.473845715675612 0.785058773859439 0.82387257 0.9091941 prediction 0.570117547718877 Functional Gain - RIMS1 ENSG00000079841 CDS Human protein_coding chr6:72892261 chr6:72892264 nonsynonymous SNV 0.849 1 24 hm5C_associated_SNPs_103234 0 0 0 0 0 Endoplasmic reticulum 0.500231643920989 0.500231643919266 0.17064306 0 hm5C_site_56379 DeepMRMD:0.17064306;iRNA_m5C:0 56380 chr2 183943786 183943786 1 + T A GBM 183943782 + 183943762 183943802 41 CATGGAAAGATGCCAGAATTCATGTTGTGGAAGAAGTAGAG CATGGAAAGATGCCAGAATTCATGATGTGGAAGAAGTAGAG < 41bp 0.488790401491699 0.785058213176739 0.20348528 0.29715264 prediction 0.570116426353478 Functional Gain - DUSP19 ENSG00000162999 CDS Human protein_coding chr2:183943782 chr2:183943786 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_103235 0 0 0 0 0 Nucleus 0.500231642522736 0.500231165254096 0 0 hm5C_site_56380 DeepMRMD:0;iRNA_m5C:0 56381 chr6 160831778 160831778 1 + C G LUAD 160831777 + 160831757 160831797 41 CCAGGGTGGTCCCTGAGTCTCCCCGTTGGCTGATTACTCGG CCAGGGTGGTCCCTGAGTCTCGCCGTTGGCTGATTACTCGG < 41bp 0.543044463503403 0.828081276178398 0.07856336 0.53033805 prediction 0.570073625349989 Functional Gain - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160831777 chr6:160831778 nonsynonymous SNV 0.990 4 22 hm5C_associated_SNPs_103236 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.0606761 0 hm5C_site_56381 DeepMRMD:0.0606761;iRNA_m5C:0 56382 chr1 11561371 11561371 1 + T A BLCA 11561367 + 11561347 11561387 41 GACATTGACATCTCCTACAACGCCTTTGAGATCCGCAACCA GACATTGACATCTCCTACAACGCCATTGAGATCCGCAACCA < 41bp 0.446007332774627 0.785032964510843 0.015742958 0.024316698 prediction 0.570065929021686 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11561367 chr1:11561371 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_103237 0 0 0 0 0 exosome 0.500231644328666 0.500231644156214 0 0 hm5C_site_56382 DeepMRMD:0;iRNA_m5C:0 56383 chrX 136649486 136649486 1 + C A LUAD 136649482 + 136649462 136649502 41 CCCGCGCACGGACCCCTACGCGGCCGGCGCTCAGTTTCCTA CCCGCGCACGGACCCCTACGCGGCAGGCGCTCAGTTTCCTA < 41bp 0.620751453852822 0.905773091884112 0.4052022 0.49445978 prediction 0.570043276062578 Functional Gain - ZIC3 ENSG00000156925 CDS Human protein_coding chrX:136649482 chrX:136649486 synonymous SNV . 0 25 hm5C_associated_SNPs_103238 0 0 0 0 0 exosome 0.500231643937712 0.500231643922758 0 0 hm5C_site_56383 DeepMRMD:0;iRNA_m5C:0 56384 chr19 46997817 46997817 1 + C A LUSC 46997813 + 46997793 46997833 41 GTCGCTGTCCACCGGCTCCTCGTCCGGGGTGTCTCTCACAG GTCGCTGTCCACCGGCTCCTCGTCAGGGGTGTCTCTCACAG < 41bp 0.421236210004159 0.785017995743727 0.12799683 0.15915188 prediction 0.570035991487455 Functional Gain - PNMA8B ENSG00000204851 CDS Human protein_coding chr19:46997813 chr19:46997817 synonymous SNV . 0 25 hm5C_associated_SNPs_103239 0 0 0 0 0 unknown 0.500231643200811 0.500219489491642 0 0 hm5C_site_56384 DeepMRMD:0;iRNA_m5C:0 56385 chr15 59808884 59808884 1 + T A BLCA 59808880 + 59808860 59808900 41 ATATGGAGAAGAAGCTCAGCCAGATGTCAGCCAGGCTTGAC ATATGGAGAAGAAGCTCAGCCAGAAGTCAGCCAGGCTTGAC < 41bp 0.5331214714334 0.818138970083513 0.58899194 0.39575893 prediction 0.570034997300225 Functional Gain - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59808880 chr15:59808884 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_103240 0 0 0 0 1 Cytosol 0.500231888928592 0.50023164424909 0 0 hm5C_site_56385 DeepMRMD:0;iRNA_m5C:0 56386 chr19 51628390 51628390 1 + T G LUAD 51628388 + 51628368 51628408 41 CCTCGCATGGCTGGATTTACCCTGGCCCAGTAGTTCATGGC CCTCGCATGGCTGGATTTACCCGGGCCCAGTAGTTCATGGC < 41bp 0.432491146422473 0.784989300977979 0.77043414 0.9341636 prediction 0.569978601955959 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51628388 chr19:51628390 synonymous SNV . 0 23 hm5C_associated_SNPs_103241 0 0 0 0 0 exosome 0.500231644066127 0.50023164388743 0.32745892 0 hm5C_site_56386 DeepMRMD:0.32745892;iRNA_m5C:0 56387 chr7 143806846 143806846 1 + C A HNSC 143806842 + 143806822 143806862 41 CCTGGACTCTAAGCTTCACACACCCATGTACTTCTTCCTCT CCTGGACTCTAAGCTTCACACACCAATGTACTTCTTCCTCT < 41bp 0.617627031119057 0.902615779929964 0.008152187 0.018776149 prediction 0.569977497621815 Functional Gain - OR2A2 ENSG00000221989 CDS Human protein_coding chr7:143806842 chr7:143806846 synonymous SNV . 0 25 hm5C_associated_SNPs_103242 0 0 0 0 0 unknown 0.50023164386821 0.500231644811498 0 1.88657689470517e-09 hm5C_site_56387 DeepMRMD:0;iRNA_m5C:1.88657689470517e-09 56388 chr6 28317705 28317705 1 + C G rs564722467 28317704 + 28317684 28317724 41 GCCCGGAAGTGGCTTCTGTGCCCCGCCCTGCGGGTGGTTTG GCCCGGAAGTGGCTTCTGTGCGCCGCCCTGCGGGTGGTTTG < 41bp 0.493658147428742 0.78498592999561 0.055154026 0.11805725 prediction 0.569971859991221 Functional Gain - ZKSCAN3 ENSG00000189298 UTR5 Human protein_coding chr6:28317704 chr6:28317705 . . 0 22 hm5C_associated_SNPs_103243 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56388 DeepMRMD:0;iRNA_m5C:0 56389 chr1 20669084 20669084 1 + C G rs74056519 20669080 + 20669060 20669100 41 GTGAGAGAGCGGACTTCTGACAGCCGAAGCCCTGGAGATCT GTGAGAGAGCGGACTTCTGACAGCGGAAGCCCTGGAGATCT < 41bp 0.504675560016926 0.789653731675895 0.61307794 0.8954662 prediction 0.569956343317938 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20669080 chr1:20669084 nonsynonymous SNV 0.025 0 25 hm5C_associated_SNPs_103244 0 0 0 0 1 exosome 0.500231643750449 0.500231644092456 0.56477652 6.84014844765102e-10 hm5C_site_56389 DeepMRMD:0.56477652;iRNA_m5C:6.84014844765102e-10 56390 chr6 26156711 26156711 1 + C G rs141466409 26156710 + 26156690 26156730 41 CCGCAAGTCTGCAGGTGCGGCCAAGCGCAAAGCGTCTGGGC CCGCAAGTCTGCAGGTGCGGCGAAGCGCAAAGCGTCTGGGC < 41bp 0.492355858298895 0.784957727274557 0.4873313 0.37504926 prediction 0.569915454549114 Functional Gain - HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26156710 chr6:26156711 synonymous SNV . 0 22 hm5C_associated_SNPs_103245 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56390 DeepMRMD:0;iRNA_m5C:0 56391 chr19 14830041 14830041 1 + T G UCEC 14830038 + 14830018 14830058 41 TTCAGGCACAGCTCCTCACTCACTGTACACAAAAGAACCCA TTCAGGCACAGCTCCTCACTCACGGTACACAAAAGAACCCA < 41bp 0.403155112343379 0.784955406721762 0.044285536 0.359613 prediction 0.569910813443525 Functional Gain - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14830038 chr19:14830041 synonymous SNV . 0 24 hm5C_associated_SNPs_103246 0 0 1 0 0 Nucleus 0.500233072110809 0.500231643921078 0 0 hm5C_site_56391 DeepMRMD:0;iRNA_m5C:0 56392 chr7 141490297 141490297 1 + C G BRCA 141490296 + 141490276 141490316 41 TTCAACTGGTCCTCATATAACCTCATTATCCTGGGCCTGGC TTCAACTGGTCCTCATATAACGTCATTATCCTGGGCCTGGC < 41bp 0.517310885380727 0.80225294922925 0.07744059 0.1424177 prediction 0.569884127697046 Functional Gain - TAS2R5 ENSG00000127366 CDS Human protein_coding chr7:141490296 chr7:141490297 nonsynonymous SNV 0.712 3 22 hm5C_associated_SNPs_103247 0 0 1 0 0 nucleolus 0.500231643921092 0.500231643921092 0 0 hm5C_site_56392 DeepMRMD:0;iRNA_m5C:0 56393 chr14 76012890 76012890 1 + T G SKCM 76012887 + 76012867 76012907 41 GGAACTGAAGTACTTCACGTCGGTGCTGAACAGCCACGAGC GGAACTGAAGTACTTCACGTCGGGGCTGAACAGCCACGAGC < 41bp 0.614808919480332 0.899740536981913 0.26586396 0.91227186 prediction 0.569863235003161 Functional Gain - BATF ENSG00000156127 CDS Human protein_coding chr14:76012887 chr14:76012890 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_103248 0 0 0 0 1 exosome 0.500231643921093 0.500231643921115 0.82454372 4.41868763800812e-14 hm5C_site_56393 DeepMRMD:0.82454372;iRNA_m5C:4.41868763800812e-14 56394 chr17 72758264 72758264 1 + C A rs200926419 72758260 + 72758240 72758280 41 GTTCATCCGGTCAGTGGACCCAGACTCCCCGGCTGAGGCTT GTTCATCCGGTCAGTGGACCCAGAATCCCCGGCTGAGGCTT < 41bp 0.618620098210479 0.903537481592677 0.34268516 0.36098695 prediction 0.569834766764397 Functional Gain - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72758260 chr17:72758264 nonsynonymous SNV 0.890 1 25 hm5C_associated_SNPs_103249 0 0 1 0 1 Ribosome 0.500231643921017 0.500231643921092 0 1.50546242139171e-13 hm5C_site_56394 DeepMRMD:0;iRNA_m5C:1.50546242139171e-13 56395 chrX 69500667 69500667 1 + T A OV 69500663 + 69500643 69500683 41 CCTGATCCATCCGAAGCCATCTCATGGTGAGTGACCAGGTG CCTGATCCATCCGAAGCCATCTCAAGGTGAGTGACCAGGTG < 41bp 0.565808352755463 0.850712765902192 0.08443263 0.07613546 prediction 0.569808826293457 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500663 chrX:69500667 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_103250 0 0 0 0 2 Cytosol 0.500226582430028 0.500231643921095 0 1.01229821336535e-05 hm5C_site_56395 DeepMRMD:0;iRNA_m5C:1.01229821336535e-05 56396 chr1 1104442 1104442 1 + G T PRAD 1104446 - 1104426 1104466 41 CAGCGGATGGACGGTTTTACCAGACAGTATTAGACAGAGGG CAGCGGATGGACGGTTTTACCAGAAAGTATTAGACAGAGGG < 41bp 0.468809080054938 0.784896565003458 0.5275031 0.87905836 prediction 0.569793130006917 Functional Gain - MIR429 ENSG00000198976 ncRNA_exonic Human miRNA chr1:1104446 chr1:1104442 . . 0 25 hm5C_associated_SNPs_103251 0 0 0 0 0 unknown 0.500231643921184 0.500231643921092 0.70311052 0 hm5C_site_56396 DeepMRMD:0.70311052;iRNA_m5C:0 56397 chr4 17616277 17616277 1 + C A LUAD 17616273 + 17616253 17616293 41 GGATCTCTCTTGCGCCATTCCAAACATGGCGGCTCCACTAG GGATCTCTCTTGCGCCATTCCAAAAATGGCGGCTCCACTAG < 41bp 0.59809915519104 0.882987687495966 0.29249346 0.3436116 prediction 0.569777064609852 Functional Gain - MED28 ENSG00000118579 UTR5 Human protein_coding chr4:17616273 chr4:17616277 . . 0 25 hm5C_associated_SNPs_103252 0 0 1 0 0 Ribosome 0.50023164392795 0.500231643921093 0 0 hm5C_site_56397 DeepMRMD:0;iRNA_m5C:0 56398 chr1 156884472 156884472 1 + C A OV 156884468 + 156884448 156884488 41 CTGTGGGCTCCCAGCCCCCTCTGCCTCCGGGCCTACCCCCC CTGTGGGCTCCCAGCCCCCTCTGCATCCGGGCCTACCCCCC < 41bp 0.377274597730819 0.784875867378931 0.08658239 0.17055431 prediction 0.569751734757863 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156884468 chr1:156884472 nonsynonymous SNV 0.971 3 25 hm5C_associated_SNPs_103253 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_56398 DeepMRMD:0;iRNA_m5C:0 56399 chr1 238090458 238090458 1 + C G LUAD 238090457 + 238090437 238090477 41 TGCTGCTGATCGAGGCCTGCCCGAACCCCAAGGCCAACAGA TGCTGCTGATCGAGGCCTGCCGGAACCCCAAGGCCAACAGA < 41bp 0.526976384009914 0.811837297533906 0.37701547 0.88768375 prediction 0.569721827047985 Functional Gain - LOC100130331 ENSG00000237250;ENSG00000243781 ncRNA_exonic Human other chr1:238090457 chr1:238090458 . . 0 22 hm5C_associated_SNPs_103254 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0.7753675 0 hm5C_site_56399 DeepMRMD:0.7753675;iRNA_m5C:0 56400 chr17 61889361 61889361 1 + C G LUSC 61889360 + 61889340 61889380 41 AGTAAATGGAACTGGCTTACCCGGCGTCTGGTAGAATTTAC AGTAAATGGAACTGGCTTACCGGGCGTCTGGTAGAATTTAC < 41bp 0.514589971924876 0.799444873210448 0.7862781 0.90261555 prediction 0.569709802571144 Functional Gain - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61889360 chr17:61889361 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_103255 0 0 1 0 1 chromatin 0.500231644005805 0.50023164392713 0.2326749 0 hm5C_site_56400 DeepMRMD:0.2326749;iRNA_m5C:0 56401 chr22 40804844 40804844 1 + C A LUAD 40804840 + 40804820 40804860 41 CTGACCCCGGAGGAGCTGCTCTACCGGGTAAGGGGGCCTCC CTGACCCCGGAGGAGCTGCTCTACAGGGTAAGGGGGCCTCC < 41bp 0.367700027341807 0.784843565660901 0.14284739 0.6450587 prediction 0.569687131321801 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40804840 chr22:40804844 synonymous SNV . 0 25 hm5C_associated_SNPs_103256 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.2901174 0 hm5C_site_56401 DeepMRMD:0.2901174;iRNA_m5C:0 56402 chr2 25016218 25016218 1 + C G LUAD 25016217 + 25016197 25016237 41 GCCGCCATCTTCCTGACCACCCGAAAGGCCGGACCTACTCC GCCGCCATCTTCCTGACCACCGGAAAGGCCGGACCTACTCC < 41bp 0.522737553300887 0.807577100295712 0.2618186 0.77635765 prediction 0.56967909398965 Functional Gain - PTRHD1 ENSG00000184924 CDS Human protein_coding chr2:25016217 chr2:25016218 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_103257 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921093 0.5527153 2.22044604925031e-16 hm5C_site_56402 DeepMRMD:0.5527153;iRNA_m5C:2.22044604925031e-16 56403 chr16 19613003 19613003 1 + C G OV 19612999 + 19612979 19613019 41 CTCCCAGGAAAGCTCGTGTACGAGCGCATCTTTTCCATGTG CTCCCAGGAAAGCTCGTGTACGAGGGCATCTTTTCCATGTG < 41bp 0.496884628364456 0.784838599662787 0.33382028 0.9095123 prediction 0.569677199325573 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19612999 chr16:19613003 nonsynonymous SNV 0.948 4 25 hm5C_associated_SNPs_103258 0 0 1 0 2 Cytosol 0.500231643920721 0.50023164392109 0.8190246 7.38964445190504e-13 hm5C_site_56403 DeepMRMD:0.8190246;iRNA_m5C:7.38964445190504e-13 56404 chr2 120388409 120388409 1 + T G ESCA 120388407 + 120388387 120388427 41 AACTCAGCTCTCTGGCAAAACATCAGTCTTGAGCATGAAAC AACTCAGCTCTCTGGCAAAACAGCAGTCTTGAGCATGAAAC < 41bp 0.460424253536881 0.784808745935802 0.14777586 0.28596923 prediction 0.569617491871604 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120388407 chr2:120388409 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_103259 0 0 0 0 2 exosome 0.500231410734849 0.500231633810398 0 4.46151099176006e-07 hm5C_site_56404 DeepMRMD:0;iRNA_m5C:4.46151099176006e-07 56405 chr5 140563641 140563641 1 + C A BLCA 140563637 + 140563617 140563657 41 GACCCGCACCTGCCCCTCGCCTCCCTGGTCTCCATCAACGC GACCCGCACCTGCCCCTCGCCTCCATGGTCTCCATCAACGC < 41bp 0.365944604608012 0.784806159239881 0.116383106 0.96539044 prediction 0.569612318479761 Functional Gain - PCDHB16 ENSG00000196963 CDS Human other chr5:140563637 chr5:140563641 nonsynonymous SNV 0.021 2 25 hm5C_associated_SNPs_103260 0 0 0 0 0 Nucleus 0.500231644004349 0.500231430177775 0.93078088 0 hm5C_site_56405 DeepMRMD:0.93078088;iRNA_m5C:0 56406 chr7 44150544 44150544 1 + C A MESO 44150540 + 44150520 44150560 41 TGGGAACGTGGACAAGGACACACCCGTGCTGAGTGAGCTCC TGGGAACGTGGACAAGGACACACCAGTGCTGAGTGAGCTCC < 41bp 0.368876727689236 0.78479198679738 0.064293474 0.13571131 prediction 0.569583973594761 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44150540 chr7:44150544 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_103261 0 0 0 0 0 Endoplasmic reticulum 0.500235210875725 0.500231560135944 0 0 hm5C_site_56406 DeepMRMD:0;iRNA_m5C:0 56407 chr5 76028982 76028982 1 + C A LUSC 76028978 + 76028958 76028998 41 CCAACCGCAGCAAGAAGTCCCGGGCTTTGTTCCTGTCAGCT CCAACCGCAGCAAGAAGTCCCGGGATTTGTTCCTGTCAGCT < 41bp 0.415692435861615 0.784780756359889 0.8936657 0.9173058 prediction 0.569561512719777 Functional Gain - F2R ENSG00000181104 CDS Human protein_coding chr5:76028978 chr5:76028982 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103262 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643920631 0.0472801999999999 0 hm5C_site_56407 DeepMRMD:0.0472801999999999;iRNA_m5C:0 56408 chr6 161174871 161174871 1 + C A rs11902 161174867 + 161174847 161174887 41 GAAACAGTCTGCAGTACACACGGTCACAGGAGAATGACCTG GAAACAGTCTGCAGTACACACGGTAACAGGAGAATGACCTG < 41bp 0.460844010132997 0.784772044882594 0.16639832 0.17082295 prediction 0.569544089765188 Functional Gain - PLG ENSG00000122194 downstream Human protein_coding chr6:161174867 chr6:161174871 . . 0 25 hm5C_associated_SNPs_103263 0 0 0 0 0 exosome 0.500231643920653 0.500231643935721 0 3.01356717358203e-11 hm5C_site_56408 DeepMRMD:0;iRNA_m5C:3.01356717358203e-11 56409 chr10 70748846 70748846 1 + C G UCS 70748845 + 70748825 70748865 41 GGTGGTGGAGCCCGAGGGGCCCGTCGCCCAGCGAGCGGTGA GGTGGTGGAGCCCGAGGGGCCGGTCGCCCAGCGAGCGGTGA < 41bp 0.50126546568787 0.786021252265305 0.3633077 0.6495872 prediction 0.56951157315487 Functional Gain - KIF1BP ENSG00000198954 CDS Human protein_coding chr10:70748845 chr10:70748846 synonymous SNV . 0 22 hm5C_associated_SNPs_103264 0 0 1 0 0 chromatin 0.500231643950702 0.500231650738947 0.2991744 1.3576489710232e-08 hm5C_site_56409 DeepMRMD:0.2991744;iRNA_m5C:1.3576489710232e-08 56410 chr11 110327727 110327727 1 + T A rs186702065 110327723 + 110327703 110327743 41 TGAGAAGTTAGATGCAATCACTGATGAGGAGAATGACATGC TGAGAAGTTAGATGCAATCACTGAAGAGGAGAATGACATGC < 41bp 0.555453013382219 0.840194462015535 0.1389867 0.13353622 prediction 0.569482897266631 Functional Gain - FDX1 ENSG00000137714 CDS Human protein_coding chr11:110327723 chr11:110327727 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_103265 0 0 1 0 2 Cytosol 0.500235212242713 0.500231253242706 0 0 hm5C_site_56410 DeepMRMD:0;iRNA_m5C:0 56411 chr6 135524449 135524449 1 + C A rs114298899 135524445 + 135524425 135524465 41 CAGTACCTAAAAACAGGTCCCTGGCGAGCCCCTTGCAGGTA CAGTACCTAAAAACAGGTCCCTGGAGAGCCCCTTGCAGGTA < 41bp 0.443402695841218 0.784732016719753 0.07641989 0.13062724 prediction 0.569464033439505 Functional Gain - MYB ENSG00000118513 CDS Human protein_coding chr6:135524445 chr6:135524449 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_103266 0 0 1 0 2 Nucleus 0.500231674040114 0.500231899217506 0 4.50354785241913e-07 hm5C_site_56411 DeepMRMD:0;iRNA_m5C:4.50354785241913e-07 56412 chr1 109271482 109271482 1 + C A LUAD 109271478 + 109271458 109271498 41 AAACACAGGCAGGACGGAGCCTGCCCAGCTACAGTGTGCCC AAACACAGGCAGGACGGAGCCTGCACAGCTACAGTGTGCCC < 41bp 0.632743361104719 0.917472036646329 0.03518462 0.15737051 prediction 0.569457351083219 Functional Gain - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109271478 chr1:109271482 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_103267 0 0 0 0 1 exosome 0.500231438881671 0.500242571455837 0 2.22651483325897e-05 hm5C_site_56412 DeepMRMD:0;iRNA_m5C:2.22651483325897e-05 56413 chr19 1250353 1250353 1 + T G rs202070687 1250351 + 1250331 1250371 41 GCGCGGGGCCCCCGGCGGCGCCTGCGAGCTGGGCCCGGCGG GCGCGGGGCCCCCGGCGGCGCCGGCGAGCTGGGCCCGGCGG < 41bp 0.566047067990723 0.85076458203896 0.49492514 0.86955523 prediction 0.569435028096474 Functional Gain - MIDN ENSG00000167470 CDS Human protein_coding chr19:1250351 chr19:1250353 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_103268 0 0 1 0 0 chromatin 0.500231643921092 0.500231643878667 0.73911046 0 hm5C_site_56413 DeepMRMD:0.73911046;iRNA_m5C:0 56414 chr5 52211386 52211386 1 + T A HNSC 52211382 + 52211362 52211402 41 TTTAAATGGTGACGGTCTGACAGATGTGACTATTGGGGGCC TTTAAATGGTGACGGTCTGACAGAAGTGACTATTGGGGGCC < 41bp 0.534262891691181 0.818968968999109 0.8877616 0.89095825 prediction 0.569412154615855 Functional Gain - ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52211382 chr5:52211386 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_103269 0 0 0 0 1 chromatin 0.500231643921119 0.500231643921092 0.00639329999999982 0 hm5C_site_56414 DeepMRMD:0.00639329999999982;iRNA_m5C:0 56415 chr4 106858268 106858268 1 + C G LUAD 106858267 + 106858247 106858287 41 TCAACGGATATATGCTCATGCCGGATGGTTCCTGCTCAAGT TCAACGGATATATGCTCATGCGGGATGGTTCCTGCTCAAGT < 41bp 0.484022699091383 0.784674035571088 0.44173664 0.8979085 prediction 0.569348071142177 Functional Gain - NPNT ENSG00000168743 CDS Human protein_coding chr4:106858267 chr4:106858268 nonsynonymous SNV 0.915 4 22 hm5C_associated_SNPs_103270 0 0 0 0 1 exosome 0.500230890719421 0.500231643772671 0.795817 1.50610649995997e-06 hm5C_site_56415 DeepMRMD:0.795817;iRNA_m5C:1.50610649995997e-06 56416 chr10 75523334 75523334 1 + T G UCEC 75523331 + 75523311 75523351 41 GGCCAGGTGCCACCCTTAGTCACTACCAACTTCCTGGTGAA GGCCAGGTGCCACCCTTAGTCACGACCAACTTCCTGGTGAA < 41bp 0.60906119704428 0.893731020335351 0.13786677 0.5475583 prediction 0.569339646582143 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75523331 chr10:75523334 synonymous SNV . 0 24 hm5C_associated_SNPs_103271 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0.0951166000000001 0 hm5C_site_56416 DeepMRMD:0.0951166000000001;iRNA_m5C:0 56417 chr19 41622185 41622185 1 + C A UCEC 41622181 + 41622161 41622201 41 GCTCAAGAGATAAGGGAAAGCTGCCTCCGGGACCCAGACCC GCTCAAGAGATAAGGGAAAGCTGCATCCGGGACCCAGACCC < 41bp 0.624714975132642 0.909369935847535 0.29738542 0.22377548 prediction 0.569309921429787 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622181 chr19:41622185 nonsynonymous SNV 0.025 4 25 hm5C_associated_SNPs_103272 0 0 0 0 1 exosome 0.500231643921202 0.50023156107005 0 0 hm5C_site_56417 DeepMRMD:0;iRNA_m5C:0 56418 chr17 48703992 48703992 1 + C A KIRC 48703988 + 48703968 48704008 41 CCTCCGGAGGAGGGCTCCGTCCAGCGACTCCAAGGATCCCT CCTCCGGAGGAGGGCTCCGTCCAGAGACTCCAAGGATCCCT < 41bp 0.462744041541576 0.784653696975652 0.20501557 0.5881609 prediction 0.569307393951304 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48703988 chr17:48703992 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_103273 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.1763218 0 hm5C_site_56418 DeepMRMD:0.1763218;iRNA_m5C:0 56419 chr5 79366218 79366218 1 + C A LUAD 79366214 + 79366194 79366234 41 CGACGAAGAACTGCCATGCTCTGCCAGGAACTGTAAAAAGG CGACGAAGAACTGCCATGCTCTGCAAGGAACTGTAAAAAGG < 41bp 0.351546855748332 0.784649546562891 0.08747268 0.47425178 prediction 0.569299093125783 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79366214 chr5:79366218 synonymous SNV . 0 25 hm5C_associated_SNPs_103274 0 0 0 0 1 exosome 0.500233420354442 0.500231365996164 0 0 hm5C_site_56419 DeepMRMD:0;iRNA_m5C:0 56420 chr1 228238556 228238556 1 + C A rs61742275 228238552 + 228238532 228238572 41 GATGGTGTCTCGGGAGTTCGCCGACGCCCGGGAGAACCGGC GATGGTGTCTCGGGAGTTCGCCGAAGCCCGGGAGAACCGGC < 41bp 0.394268701785448 0.784647923199083 0.9327748 0.926221 prediction 0.569295846398167 Functional Gain - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228238552 chr1:228238556 nonsynonymous SNV 0.031 2 25 hm5C_associated_SNPs_103275 0 0 0 0 1 exosome 0.500231643586345 0.500231643920693 0 6.68696209515929e-10 hm5C_site_56420 DeepMRMD:0;iRNA_m5C:6.68696209515929e-10 56421 chr16 19041664 19041664 1 + C A SKCM 19041660 + 19041640 19041680 41 TGTTAAGCACAATCGCCTCCCTGGCCCTGAGCCTTCTTTGG TGTTAAGCACAATCGCCTCCCTGGACCTGAGCCTTCTTTGG < 41bp 0.367311823373944 0.784644841684615 0.059319198 0.10968247 prediction 0.56928968336923 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19041660 chr16:19041664 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_103276 0 0 0 0 1 chromatin 0.500231643920833 0.500231643889284 0 0 hm5C_site_56421 DeepMRMD:0;iRNA_m5C:0 56422 chr6 110300884 110300884 1 + C A PAAD 110300880 + 110300860 110300900 41 TGTTGGGCGTGCACCTCCTGCTTGCCGCCACTTGGACCGTG TGTTGGGCGTGCACCTCCTGCTTGACGCCACTTGGACCGTG < 41bp 0.388137168796521 0.784635380140769 0.13886192 0.25488442 prediction 0.569270760281539 Functional Gain - GPR6 ENSG00000146360 CDS Human protein_coding chr6:110300880 chr6:110300884 nonsynonymous SNV 0.736 3 25 hm5C_associated_SNPs_103277 0 0 0 0 0 unknown 0.500231643921072 0.500231644345143 0 8.48142889253722e-10 hm5C_site_56422 DeepMRMD:0;iRNA_m5C:8.48142889253722e-10 56423 chrX 153551630 153551630 1 + C A LUAD 153551626 + 153551606 153551646 41 ATTCCCAAGTGCACGATCTTCTACCCAACTGATGCCGTCTC ATTCCCAAGTGCACGATCTTCTACACAACTGATGCCGTCTC < 41bp 0.351142020764703 0.784633863852485 0.2134153 0.72199726 prediction 0.569267727704969 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153551626 chrX:153551630 nonsynonymous SNV 0.894 4 25 hm5C_associated_SNPs_103278 0 0 0 0 2 exosome 0.500231643761147 0.500139073064114 0.44399452 0 hm5C_site_56423 DeepMRMD:0.44399452;iRNA_m5C:0 56424 chr5 75428131 75428131 1 + C G LUAD 75428130 + 75428110 75428150 41 GCTGAGACAGACCTCTGCATCCCAAATTCAGGATCTGGATG GCTGAGACAGACCTCTGCATCGCAAATTCAGGATCTGGATG < 41bp 0.49512871271951 0.784609676955668 0.07892856 0.14032844 prediction 0.569219353911335 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75428130 chr5:75428131 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_103279 0 0 0 0 1 exosome 0.50023172372204 0.500231070008466 0 0 hm5C_site_56424 DeepMRMD:0;iRNA_m5C:0 56425 chr12 56532030 56532030 1 + C A SKCM 56532026 + 56532006 56532046 41 TTGCGCCTGGAGCGTCTCACCCCCCGTCCCACTGCTGCTGA TTGCGCCTGGAGCGTCTCACCCCCAGTCCCACTGCTGCTGA < 41bp 0.365655219001907 0.784608995859861 0.13444883 0.21806875 prediction 0.569217991719722 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532026 chr12:56532030 nonsynonymous SNV 0.095 0 25 hm5C_associated_SNPs_103280 0 0 1 0 2 Endoplasmic reticulum 0.500231643921092 0.500231632625052 0 0 hm5C_site_56425 DeepMRMD:0;iRNA_m5C:0 56426 chr8 55533794 55533794 1 + C G LIHC 55533790 + 55533770 55533810 41 AACATCAGCACCCCTCGGGGCAGGCACAGCATCACGCGCCT AACATCAGCACCCCTCGGGGCAGGGACAGCATCACGCGCCT < 41bp 0.492073498301282 0.784605480329727 0.37412676 0.89863783 prediction 0.569210960659453 Functional Gain - RP1 ENSG00000104237 CDS Human protein_coding chr8:55533790 chr8:55533794 nonsynonymous SNV 0.984 5 25 hm5C_associated_SNPs_103281 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.79727566 0 hm5C_site_56426 DeepMRMD:0.79727566;iRNA_m5C:0 56427 chr12 53450811 53450811 1 + T G COAD 53450808 + 53450788 53450828 41 TATCCCCAGGGCGGACCAGGCACTGGCCACTCTTACCATGC TATCCCCAGGGCGGACCAGGCACGGGCCACTCTTACCATGC < 41bp 0.397956591914222 0.784592940559204 0.42519474 0.75561357 prediction 0.569185881118407 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53450808 chr12:53450811 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_103282 0 0 1 0 2 cytosol 0.500231643921092 0.500231643924978 0.51122714 7.77111708316625e-12 hm5C_site_56427 DeepMRMD:0.51122714;iRNA_m5C:7.77111708316625e-12 56428 chr4 184931728 184931728 1 + C A STAD 184931724 + 184931704 184931744 41 CCTTTTGGAGCCAGGAAAACCACCCGAGAGTTTGCCATCCT CCTTTTGGAGCCAGGAAAACCACCAGAGAGTTTGCCATCCT < 41bp 0.359039891783567 0.784589239125424 0.16001734 0.28062016 prediction 0.569178478250847 Functional Gain - STOX2 ENSG00000173320 CDS Human protein_coding chr4:184931724 chr4:184931728 synonymous SNV . 0 25 hm5C_associated_SNPs_103283 0 0 1 0 0 exosome 0.500231643919968 0.500231577644721 0 0 hm5C_site_56428 DeepMRMD:0;iRNA_m5C:0 56429 chr3 119331936 119331936 1 + T A LUSC 119331932 + 119331912 119331952 41 GCTTGGATGCTGGAGATGCCCTCTTCGTGGAAGCCATCCAC GCTTGGATGCTGGAGATGCCCTCTACGTGGAAGCCATCCAC < 41bp 0.56662869073122 0.851211296991269 0.0142223835 0.06775963 prediction 0.569165212520096 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119331932 chr3:119331936 nonsynonymous SNV 0.986 5 25 hm5C_associated_SNPs_103284 0 0 0 2 2 exosome 0.500231636113759 0.500231641673438 0 1.11193578788971e-08 hm5C_site_56429 DeepMRMD:0;iRNA_m5C:1.11193578788971e-08 56430 chr12 125576014 125576014 1 + C G CESC 125576010 + 125575990 125576030 41 AGCACGCTGTCGAGGCGATGCTGGCTGCGGCAAGCATTGGT AGCACGCTGTCGAGGCGATGCTGGGTGCGGCAAGCATTGGT < 41bp 0.508017784110919 0.792562936462474 0.56224304 0.8937398 prediction 0.569090304703111 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125576010 chr12:125576014 nonsynonymous SNV 0.526 2 25 hm5C_associated_SNPs_103285 0 0 1 1 2 Ribosome 0.500218920398984 0.500200952023947 0.66299352 0 hm5C_site_56430 DeepMRMD:0.66299352;iRNA_m5C:0 56431 chr8 1497755 1497755 1 + C A OV 1497751 + 1497731 1497771 41 GGTCTACGCTGACGGTCAGCCAGGCCAAGGAGGCCTACCGC GGTCTACGCTGACGGTCAGCCAGGACAAGGAGGCCTACCGC < 41bp 0.615637026993695 0.900174426925649 0.56650096 0.48811325 prediction 0.569074799863909 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1497751 chr8:1497755 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_103286 0 0 0 0 1 nucleolus 0.50023078008558 0.500209607479138 0 0 hm5C_site_56431 DeepMRMD:0;iRNA_m5C:0 56432 chr8 146278737 146278737 1 + C G LUAD 146278736 + 146278716 146278756 41 GCAGCAAAAGAACGCCCTTGCCCCGGAAGAGGCAGCTGATG GCAGCAAAAGAACGCCCTTGCGCCGGAAGAGGCAGCTGATG < 41bp 0.536618959544957 0.821148574730979 0.15199766 0.49840397 prediction 0.569059230372044 Functional Gain - C8orf33 ENSG00000182307 CDS Human protein_coding chr8:146278736 chr8:146278737 nonsynonymous SNV 0.417 3 22 hm5C_associated_SNPs_103287 0 0 1 1 2 Ribosome 0.500231643901584 0.500232228179484 0 1.16855580167829e-06 hm5C_site_56432 DeepMRMD:0;iRNA_m5C:1.16855580167829e-06 56433 chr5 140581384 140581384 1 + C A STAD 140581380 + 140581360 140581400 41 GCCGCTCCCTGAGGCGGCACCGGCCCAGGCCCAGGCCGACT GCCGCTCCCTGAGGCGGCACCGGCACAGGCCCAGGCCGACT < 41bp 0.609460673489187 0.893978305406235 0.5304947 0.813545 prediction 0.569035263834096 Functional Gain - PCDHB11 ENSG00000197479 CDS Human protein_coding chr5:140581380 chr5:140581384 synonymous SNV . 0 25 hm5C_associated_SNPs_103288 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643834174 0.5661006 0 hm5C_site_56433 DeepMRMD:0.5661006;iRNA_m5C:0 56434 chr19 58992220 58992220 1 + T G rs3752112 58992217 + 58992197 58992237 41 GTGAACAAGGGGTCCCAAGCCAGTTCCCTGCCCCTGGTCTG GTGAACAAGGGGTCCCAAGCCAGGTCCCTGCCCCTGGTCTG < 41bp 0.583597040023653 0.868106465527749 0.14013872 0.8937468 prediction 0.569018851008191 Functional Gain - ZNF446 ENSG00000083838 UTR3 Human protein_coding chr19:58992217 chr19:58992220 . . 0 24 hm5C_associated_SNPs_103289 0 0 1 0 0 nucleolus 0.500231643921092 0.500231643921092 0.7874936 0 hm5C_site_56434 DeepMRMD:0.7874936;iRNA_m5C:0 56435 chr13 53603077 53603077 1 + T A rs35790097 53603073 + 53603053 53603093 41 CCAATTCCCAGCCCCGGCTTCAGCTCTTTCCCAGGTGTTGA CCAATTCCCAGCCCCGGCTTCAGCACTTTCCCAGGTGTTGA < 41bp 0.525380286470567 0.809882311397631 0.09219444 0.13935861 prediction 0.569004049854127 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53603073 chr13:53603077 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_103290 0 0 0 0 1 exosome 0.500231643921093 0.50023164392109 0 0 hm5C_site_56435 DeepMRMD:0;iRNA_m5C:0 56436 chr2 79253884 79253884 1 + C G LUAD 79253883 + 79253863 79253903 41 CCTCTCCACGGATCAGCTGTCCCAAAGGCTCCAAGGCCTAT CCTCTCCACGGATCAGCTGTCGCAAAGGCTCCAAGGCCTAT < 41bp 0.550374916060619 0.834876260967005 0.06780115 0.12592351 prediction 0.569002689812772 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253883 chr2:79253884 nonsynonymous SNV 0.127 4 22 hm5C_associated_SNPs_103291 0 0 0 0 2 unknown 0.500231643921092 0.500231644111878 0 3.81570552931976e-10 hm5C_site_56436 DeepMRMD:0;iRNA_m5C:3.81570552931976e-10 56437 chr7 156743023 156743023 1 + C A UCEC 156743019 + 156742999 156743039 41 GAGCGTTGCCTCGGTTTGAACAAGCGCAAAAAGAAGGACGG GAGCGTTGCCTCGGTTTGAACAAGAGCAAAAAGAAGGACGG < 41bp 0.608908262506714 0.893405897458227 0.8428553 0.8237265 prediction 0.568995269903026 Functional Gain - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156743019 chr7:156743023 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103292 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_56437 DeepMRMD:0;iRNA_m5C:0 56438 chr15 84759008 84759008 1 + T G rs140114591 84759005 + 84758985 84759025 41 GATGAACAGATCCGAGGGATCACTATGAAATCCAGTGCCAT GATGAACAGATCCGAGGGATCACGATGAAATCCAGTGCCAT < 41bp 0.514202202041449 0.79868682089312 0.13157746 0.8796671 prediction 0.568969237703343 Functional Gain - EFTUD1P1 ENSG00000259404 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:84759005 chr15:84759008 . . 0 24 hm5C_associated_SNPs_103293 0 0 0 0 2 unknown 0.500231643921096 0.500231643922123 0.7593342 2.05324646174176e-12 hm5C_site_56438 DeepMRMD:0.7593342;iRNA_m5C:2.05324646174176e-12 56439 chr6 132891886 132891886 1 + C A COAD 132891882 + 132891862 132891902 41 TACTGACCCCCTGGTCTATCCTACCAAGTTCACCGTATCTG TACTGACCCCCTGGTCTATCCTACAAAGTTCACCGTATCTG < 41bp 0.387872780476708 0.784464254136662 0.12511608 0.9186915 prediction 0.568928508273324 Functional Gain - TAAR6 ENSG00000146383 CDS Human protein_coding chr6:132891882 chr6:132891886 synonymous SNV . 0 25 hm5C_associated_SNPs_103294 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0.837383 4.44089209850063e-16 hm5C_site_56439 DeepMRMD:0.837383;iRNA_m5C:4.44089209850063e-16 56440 chr7 76140988 76140988 1 + C G HNSC 76140987 + 76140967 76141007 41 CCTGCAGCCTCCAGGGGCTTCCAGAACCCGGAGACACTGGC CCTGCAGCCTCCAGGGGCTTCGAGAACCCGGAGACACTGGC < 41bp 0.490611036606028 0.784453368356569 0.5979264 0.5839426 prediction 0.568906736713137 Functional Gain - UPK3B ENSG00000243566 CDS Human protein_coding chr7:76140987 chr7:76140988 nonsynonymous SNV 0.954 0 22 hm5C_associated_SNPs_103295 0 0 0 0 1 exosome 0.50023164392109 0.500231643919842 0 0 hm5C_site_56440 DeepMRMD:0;iRNA_m5C:0 56441 chr19 44352090 44352090 1 + T A LAML 44352086 + 44352066 44352106 41 AGGCCTTTAGTCGTGGCTATCACCTTTCTCAACATCAGAAA AGGCCTTTAGTCGTGGCTATCACCATTCTCAACATCAGAAA < 41bp 0.466200593418026 0.784451742258897 0.09039676 0.13527346 prediction 0.568903484517794 Functional Gain - ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44352086 chr19:44352090 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_103296 0 0 1 0 0 Nucleus 0.500231643921737 0.500231644094843 0 3.46211503909899e-10 hm5C_site_56441 DeepMRMD:0;iRNA_m5C:3.46211503909899e-10 56442 chr10 26986612 26986612 1 + C A rs537781419 26986608 + 26986588 26986628 41 ATCGCGGGCCAGAGGCGGAGCCGCCGCCCTGCCGCGACTTT ATCGCGGGCCAGAGGCGGAGCCGCAGCCCTGCCGCGACTTT < 41bp 0.434594437333909 0.784451578296258 0.8042371 0.8136641 prediction 0.568903156592516 Functional Gain - PDSS1 ENSG00000148459 UTR5 Human protein_coding chr10:26986608 chr10:26986612 . . 0 25 hm5C_associated_SNPs_103297 0 0 0 0 0 Ribosome 0.500231643921059 0.500231643906225 0.0188539999999999 0 hm5C_site_56442 DeepMRMD:0.0188539999999999;iRNA_m5C:0 56443 chr20 54824538 54824538 1 + T G SKCM 54824535 + 54824515 54824555 41 CTCTACGTGCACATGTTCCTCTTTGCGCGGCTGCACGTCAA CTCTACGTGCACATGTTCCTCTTGGCGCGGCTGCACGTCAA < 41bp 0.414222710847741 0.784445774049566 0.19410932 0.17073599 prediction 0.568891548099131 Functional Gain - MC3R ENSG00000124089 CDS Human protein_coding chr20:54824535 chr20:54824538 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_103298 0 0 0 0 0 unknown 0.500231643893031 0.500232669723323 0 2.05166058320216e-06 hm5C_site_56443 DeepMRMD:0;iRNA_m5C:2.05166058320216e-06 56444 chr7 142836666 142836666 1 + T G HNSC 142836664 + 142836644 142836684 41 TTCGGGAATTAGGCATCTGCCCTGATGATGCTGCTGTAATC TTCGGGAATTAGGCATCTGCCCGGATGATGCTGCTGTAATC < 41bp 0.552246227943052 0.836680495857764 0.096992046 0.39675277 prediction 0.568868535829425 Functional Gain - PIP ENSG00000159763 CDS Human protein_coding chr7:142836664 chr7:142836666 synonymous SNV . 0 23 hm5C_associated_SNPs_103299 0 0 0 0 1 exosome 0.500231144692154 0.500148481604614 0 0 hm5C_site_56444 DeepMRMD:0;iRNA_m5C:0 56445 chr5 140553182 140553182 1 + C G LUAD 140553181 + 140553161 140553201 41 GTGCAGGTGCCCGAAAATAGCCCCGTTGGTTCCATGGTTGT GTGCAGGTGCCCGAAAATAGCGCCGTTGGTTCCATGGTTGT < 41bp 0.491669702165785 0.784427649688672 0.29043284 0.7513122 prediction 0.568855299377343 Functional Gain - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140553181 chr5:140553182 nonsynonymous SNV 0.179 2 22 hm5C_associated_SNPs_103300 0 0 0 0 0 exosome 0.500231643921092 0.500231643453809 0.5026244 0 hm5C_site_56445 DeepMRMD:0.5026244;iRNA_m5C:0 56446 chr1 25628159 25628159 1 + C G rs188690303 25628158 + 25628138 25628178 41 AGGGTCATCCTTGGCTCACCCCCAAGGGAAGATCAGCAAGG AGGGTCATCCTTGGCTCACCCGCAAGGGAAGATCAGCAAGG < 41bp 0.519221689643942 0.80363465308893 0.06956801 0.1164234 prediction 0.568825926889975 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25628158 chr1:25628159 synonymous SNV . 0 22 hm5C_associated_SNPs_103301 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643922149 0 2.11231032665182e-12 hm5C_site_56446 DeepMRMD:0;iRNA_m5C:2.11231032665182e-12 56447 chr9 139820600 139820600 1 + C G rs146365735 139820599 + 139820579 139820619 41 AAGGGCTGTGGTGGCATTGGCCGAGGGTCTTCGGGTGCTTC AAGGGCTGTGGTGGCATTGGCGGAGGGTCTTCGGGTGCTTC < 41bp 0.496799287740828 0.784403951377213 0.9156377 0.92768 prediction 0.568807902754425 Functional Gain - TRAF2 ENSG00000127191 UTR3 Human protein_coding chr9:139820599 chr9:139820600 . . 0 22 hm5C_associated_SNPs_103302 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.0240845999999999 0 hm5C_site_56447 DeepMRMD:0.0240845999999999;iRNA_m5C:0 56448 chr1 20517261 20517261 1 + C A STAD 20517257 + 20517237 20517277 41 TCATATACCATCTCCGCCTCCAGCCATTCCCTATGAGTTGC TCATATACCATCTCCGCCTCCAGCAATTCCCTATGAGTTGC < 41bp 0.385547489888452 0.784403498939276 0.018742919 0.015713096 prediction 0.568806997878552 Functional Gain - UBXN10 ENSG00000162543 CDS Human protein_coding chr1:20517257 chr1:20517261 synonymous SNV . 0 25 hm5C_associated_SNPs_103303 0 0 0 0 0 Cytosol 0.500231643870481 0.500231610066306 0 0 hm5C_site_56448 DeepMRMD:0;iRNA_m5C:0 56449 chr6 150266578 150266578 1 + T A rs1555697 150266574 + 150266554 150266594 41 CTGTGGCAACAAGACAGTCACACCTGTCAGTCCCCTGGGGA CTGTGGCAACAAGACAGTCACACCAGTCAGTCCCCTGGGGA < 41bp 0.547622423825438 0.832011369830115 0.16744307 0.24065572 prediction 0.568777892009354 Functional Gain - ULBP2 ENSG00000131015 CDS Human protein_coding chr6:150266574 chr6:150266578 synonymous SNV . 0 25 hm5C_associated_SNPs_103304 0 0 0 0 0 Endoplasmic reticulum 0.500232477618159 0.500234634821334 0 4.31440635106917e-06 hm5C_site_56449 DeepMRMD:0;iRNA_m5C:4.31440635106917e-06 56450 chr12 31821464 31821464 1 + C A rs137891657 31821460 + 31821440 31821480 41 TTTGAGATGGAGTCTCAGCTCTGTCGTCCAGGCTGGAGTGC TTTGAGATGGAGTCTCAGCTCTGTAGTCCAGGCTGGAGTGC < 41bp 0.433644847421146 0.784387795412439 0.20259598 0.17084897 prediction 0.568775590824879 Functional Gain - ETFBKMT ENSG00000139160 UTR3 Human protein_coding chr12:31821460 chr12:31821464 . . 0 25 hm5C_associated_SNPs_103305 0 0 0 0 0 nucleoplasm 0.500231653810212 0.500231886511423 0 4.65402420379846e-07 hm5C_site_56450 DeepMRMD:0;iRNA_m5C:4.65402420379846e-07 56451 chr11 123886709 123886709 1 + T G rs558465945 123886707 + 123886687 123886727 41 AGTGGGAGCAGGTGTGCCCTCCTGGCCACCGGCACTTGGCT AGTGGGAGCAGGTGTGCCCTCCGGGCCACCGGCACTTGGCT < 41bp 0.58897819380856 0.873362216321351 0.1797893 0.9169525 prediction 0.568768045025581 Functional Gain - OR10G4 ENSG00000254737 CDS Human protein_coding chr11:123886707 chr11:123886709 nonsynonymous SNV 0.117 3 23 hm5C_associated_SNPs_103306 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.833905 0 hm5C_site_56451 DeepMRMD:0.833905;iRNA_m5C:0 56452 chr5 176304684 176304684 1 + T G COAD 176304681 + 176304661 176304701 41 GGAGCCTGCGCCTCAAAAAGCAGTCGTGCGAGGGCAGCTGG GGAGCCTGCGCCTCAAAAAGCAGGCGTGCGAGGGCAGCTGG < 41bp 0.390050246461174 0.78436753007933 0.7985747 0.91875535 prediction 0.56873506015866 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176304681 chr5:176304684 nonsynonymous SNV 0.992 1 24 hm5C_associated_SNPs_103307 0 0 0 0 1 exosome 0.500231643743333 0.50023164392121 0.2403613 3.55755869207997e-10 hm5C_site_56452 DeepMRMD:0.2403613;iRNA_m5C:3.55755869207997e-10 56453 chr16 89294577 89294577 1 + C G KIRC 89294576 + 89294556 89294596 41 AGTATGCGGAAAGGCCTTCACCACATCCTCACACCTTATCG AGTATGCGGAAAGGCCTTCACGACATCCTCACACCTTATCG < 41bp 0.505067839423603 0.789421827198988 0.037320226 0.024607718 prediction 0.56870797555077 Functional Gain - ZNF778 ENSG00000170100 CDS Human protein_coding chr16:89294576 chr16:89294577 synonymous SNV . 0 22 hm5C_associated_SNPs_103308 0 0 0 0 0 chromatin 0.500231643921172 0.50023164392107 0 0 hm5C_site_56453 DeepMRMD:0;iRNA_m5C:0 56454 chr5 128797410 128797410 1 + C A BRCA 128797406 + 128797386 128797426 41 ACACCGGAGCTGTGCTGCGGCACCCTGGCTCGCTGGCTTCT ACACCGGAGCTGTGCTGCGGCACCATGGCTCGCTGGCTTCT < 41bp 0.373991632573963 0.784350762766591 0.34496984 0.5896954 prediction 0.568701525533182 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128797406 chr5:128797410 nonsynonymous SNV 0.582 2 25 hm5C_associated_SNPs_103309 0 0 0 1 1 exosome 0.500231594191679 0.500216737133484 0.1793908 0 hm5C_site_56454 DeepMRMD:0.1793908;iRNA_m5C:0 56455 chr22 42290878 42290878 1 + C A COAD 42290874 + 42290854 42290894 41 TCTGCAAGAACCTGCTGGAGCGAGCTATAGAGTCCTTGGTG TCTGCAAGAACCTGCTGGAGCGAGATATAGAGTCCTTGGTG < 41bp 0.392678615817536 0.784316916855578 0.8282635 0.88250184 prediction 0.568633833711157 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42290874 chr22:42290878 nonsynonymous SNV 0.895 4 25 hm5C_associated_SNPs_103310 0 0 1 0 2 Ribosome 0.500231643919522 0.500231643547444 0.10847668 0 hm5C_site_56455 DeepMRMD:0.10847668;iRNA_m5C:0 56456 chr17 35297618 35297618 1 + C G GBM 35297614 + 35297594 35297634 41 GGTACCAAATGCGCAGGCTGCGCTCAGGGCATCTCCCCTAG GGTACCAAATGCGCAGGCTGCGCTGAGGGCATCTCCCCTAG < 41bp 0.515933214748808 0.800246247111423 0.05289957 0.37413955 prediction 0.56862606472523 Functional Gain - LHX1 ENSG00000132130 CDS Human other chr17:35297614 chr17:35297618 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_103311 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56456 DeepMRMD:0;iRNA_m5C:0 56457 chr13 100548329 100548329 1 + C A rs7322872 100548325 + 100548305 100548345 41 GCGGAGCCCCGAGGCCTCGTCGCCCGCGCCCCCGGTGCGCG GCGGAGCCCCGAGGCCTCGTCGCCAGCGCCCCCGGTGCGCG < 41bp 0.531978960586981 0.81628136229277 0.38497347 0.5408173 prediction 0.568604803411578 Functional Gain - LOC101927437 ENSG00000125246 UTR3 Human protein_coding chr13:100548325 chr13:100548329 . . 0 25 hm5C_associated_SNPs_103312 0 0 0 0 0 unknown 0.500231644278924 0.500231643916567 0.0816345999999999 0 hm5C_site_56457 DeepMRMD:0.0816345999999999;iRNA_m5C:0 56458 chr14 24884560 24884560 1 + C G HNSC 24884559 + 24884539 24884579 41 CTGATGAGGAGAGCCAGGGCCCCCAGTCAGGGGGTGACAGC CTGATGAGGAGAGCCAGGGCCGCCAGTCAGGGGGTGACAGC < 41bp 0.532351871989764 0.816643463749875 0.15527177 0.9159059 prediction 0.568583183520223 Functional Gain - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24884559 chr14:24884560 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_103313 0 0 0 0 0 Exosome 0.500230206466901 0.500231643860977 0.8318118 2.87478815330644e-06 hm5C_site_56458 DeepMRMD:0.8318118;iRNA_m5C:2.87478815330644e-06 56459 chr8 99961221 99961221 1 + C A LUAD 99961217 + 99961197 99961237 41 TGCCAGCGCCCATCCCGCTCCACCCGTCGCTGCAGCTCACC TGCCAGCGCCCATCCCGCTCCACCAGTCGCTGCAGCTCACC < 41bp 0.35752240473065 0.784284643010906 0.41599542 0.46369725 prediction 0.568569286021813 Functional Gain - OSR2 ENSG00000164920 CDS Human protein_coding chr8:99961217 chr8:99961221 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_103314 0 0 0 0 0 exosome 0.500231642916358 0.500231643919481 0 2.00624672430649e-09 hm5C_site_56459 DeepMRMD:0;iRNA_m5C:2.00624672430649e-09 56460 chr3 128532494 128532494 1 + C G rs147244704 128532493 + 128532473 128532513 41 AATCAAACTCCAGCCCTTGCCCGTGATGGCTCCTTGGGGTC AATCAAACTCCAGCCCTTGCCGGTGATGGCTCCTTGGGGTC < 41bp 0.489032564790848 0.784257095621777 0.081238866 0.3781498 prediction 0.568514191243555 Functional Gain - RAB7A ENSG00000075785 UTR3 Human protein_coding chr3:128532493 chr3:128532494 . . 0 22 hm5C_associated_SNPs_103315 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921093 0 4.44089209850063e-16 hm5C_site_56460 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 56461 chr10 134912182 134912182 1 + T A BLCA 134912178 + 134912158 134912198 41 GCCGCAAGGGCCGGCACACGCTCCTGAATTTCTGCTTCCAC GCCGCAAGGGCCGGCACACGCTCCAGAATTTCTGCTTCCAC < 41bp 0.574018353174795 0.858262888457319 0.18239826 0.8521904 prediction 0.568489070565049 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134912178 chr10:134912182 nonsynonymous SNV 0.493 3 25 hm5C_associated_SNPs_103316 0 0 0 0 2 Nucleus 0.500231629317031 0.500231609229486 0.7043808 0 hm5C_site_56461 DeepMRMD:0.7043808;iRNA_m5C:0 56462 chr18 61654457 61654457 1 + T G PRAD 61654455 + 61654435 61654475 41 GACCACCCTTTTCTTTTCTTCATCAGGCACCACAAAACCAA GACCACCCTTTTCTTTTCTTCAGCAGGCACCACAAAACCAA < 41bp 0.467100597090686 0.784239258944859 0.024525762 0.06278831 prediction 0.568478517889719 Functional Gain - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61654455 chr18:61654457 nonsynonymous SNV 0.361 4 23 hm5C_associated_SNPs_103317 0 0 1 0 0 nucleus 0.500231643918592 0.500231643921092 0 5.00133268133141e-12 hm5C_site_56462 DeepMRMD:0;iRNA_m5C:5.00133268133141e-12 56463 chr11 48285770 48285770 1 + C G rs79872488 48285769 + 48285749 48285789 41 CTGATGGTGATGGCCTATGACCGCTATGTGGCCATCTGCAA CTGATGGTGATGGCCTATGACGGCTATGTGGCCATCTGCAA < 41bp 0.522754127594343 0.80698792907581 0.05840364 0.32011592 prediction 0.568467602962933 Functional Gain - OR4X1 ENSG00000176567 CDS Human protein_coding chr11:48285769 chr11:48285770 nonsynonymous SNV 0.012 3 22 hm5C_associated_SNPs_103318 0 0 0 0 0 unknown 0.500231641018381 0.500231643581231 0 5.1256989763715e-09 hm5C_site_56463 DeepMRMD:0;iRNA_m5C:5.1256989763715e-09 56464 chr12 51785195 51785195 1 + G T SARC 51785199 - 51785179 51785219 41 GTAAAATGAAGGGGCTGGGCCAGGCTGGTCCCTCCTGCCTT GTAAAATGAAGGGGCTGGGCCAGGATGGTCCCTCCTGCCTT < 41bp 0.574288846512136 0.858516751450215 0.7247269 0.8391885 prediction 0.568455809876159 Functional Gain - GALNT6;SLC4A8 ENSG00000050438;ENSG00000139629 UTR5 Human other chr12:51785199 chr12:51785195 . . 0 25 hm5C_associated_SNPs_103319 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.2289232 0 hm5C_site_56464 DeepMRMD:0.2289232;iRNA_m5C:0 56465 chr1 167096275 167096275 1 + C A rs202017285 167096271 + 167096251 167096291 41 AGCTGCTGGAGAGAAGCCGGCAGACGCTGGAGGAGAGCCAG AGCTGCTGGAGAGAAGCCGGCAGAAGCTGGAGGAGAGCCAG < 41bp 0.38693468016783 0.784221789132311 0.82591355 0.7718008 prediction 0.568443578264623 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167096271 chr1:167096275 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_103320 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_56465 DeepMRMD:0;iRNA_m5C:0 56466 chr19 54485698 54485698 1 + C A rs577312704 54485694 + 54485674 54485714 41 GTCGCCGTCGCGGGACGCGTCTCCCGGCGGCCCCGGGGGCC GTCGCCGTCGCGGGACGCGTCTCCAGGCGGCCCCGGGGGCC < 41bp 0.624219162930597 0.908435542136439 0.4659229 0.96772516 prediction 0.568432758411685 Functional Gain - CACNG8 ENSG00000142408 CDS Human protein_coding chr19:54485694 chr19:54485698 synonymous SNV . 0 25 hm5C_associated_SNPs_103321 0 0 0 0 0 exosome 0.50122094336841 0.500348276677825 0.93545032 0 hm5C_site_56466 DeepMRMD:0.93545032;iRNA_m5C:0 56467 chr16 1291621 1291621 1 + C A rs372314315 1291617 + 1291597 1291637 41 CGTCTCCAGCCACGTCCACACGGTCACCCTGCCCCCTGCCT CGTCTCCAGCCACGTCCACACGGTAACCCTGCCCCCTGCCT < 41bp 0.392630801479711 0.784205479243391 0.36363775 0.5110342 prediction 0.568410958486782 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291617 chr16:1291621 synonymous SNV . 0 25 hm5C_associated_SNPs_103322 0 0 0 0 1 exosome 0.500231643934014 0.500231643867324 0.0220684 0 hm5C_site_56467 DeepMRMD:0.0220684;iRNA_m5C:0 56468 chr16 55539807 55539807 1 + C G rs562314074 55539803 + 55539783 55539823 41 GCATGGCCAGGTGGCCACTCCAGACCCCTGGCTTTTCACTG GCATGGCCAGGTGGCCACTCCAGAGCCCTGGCTTTTCACTG < 41bp 0.510190227370817 0.794394236858656 0.5010721 0.85401344 prediction 0.568408018975679 Functional Gain - MMP2 ENSG00000087245 UTR3 Human protein_coding chr16:55539803 chr16:55539807 . . 0 25 hm5C_associated_SNPs_103323 1 0 0 1 0 Endoplasmic reticulum 0.500231643916429 0.500231643920547 0.70588268 8.23763279811374e-12 hm5C_site_56468 DeepMRMD:0.70588268;iRNA_m5C:8.23763279811374e-12 Multicentric Osteolysis-Nodulosis-Arthropathy (MONA) Spectrum Disorders Multicentric Osteolysis-Nodulosis-Arthropathy (MONA) Spectrum Disorders 56469 chr19 51647734 51647734 1 + T A LUAD 51647730 + 51647710 51647750 41 GGCTGCTTCCAGAATCTGACCTGCTCTGTGCCCTGGGCCTG GGCTGCTTCCAGAATCTGACCTGCACTGTGCCCTGGGCCTG < 41bp 0.462463171655088 0.78420095157076 0.2230382 0.38965073 prediction 0.56840190314152 Functional Gain - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51647730 chr19:51647734 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_103324 0 0 0 0 1 exosome 0.500231525965108 0.500231610206958 0 1.68483700324629e-07 hm5C_site_56469 DeepMRMD:0;iRNA_m5C:1.68483700324629e-07 56470 chr1 223946078 223946078 1 + T G rs550376001 223946075 + 223946055 223946095 41 TCACAGCAAGGCAGTGCAACCGGTAGCACATCGGGCTCTTT TCACAGCAAGGCAGTGCAACCGGGAGCACATCGGGCTCTTT < 41bp 0.576624040601548 0.860822073948826 0.40602303 0.89810747 prediction 0.568396066694558 Functional Gain - CAPN2 ENSG00000162909 intronic Human protein_coding chr1:223946075 chr1:223946078 . . 0 24 hm5C_associated_SNPs_103325 0 0 1 0 0 Ribosome 0.500231625861794 0.500231644128384 0.79621494 3.65331782603562e-08 hm5C_site_56470 DeepMRMD:0.79621494;iRNA_m5C:3.65331782603562e-08 56471 chr5 176799113 176799113 1 + C G rs187869615 176799112 + 176799092 176799132 41 CCAGGACAGCTGCATGGCACCCGGCGGGCCGAGCATGCCAT CCAGGACAGCTGCATGGCACCGGGCGGGCCGAGCATGCCAT < 41bp 0.525462169581439 0.809658931769458 0.21212947 0.4624106 prediction 0.568393524376038 Functional Gain - RGS14 ENSG00000169220 UTR3 Human protein_coding chr5:176799112 chr5:176799113 . . 0 22 hm5C_associated_SNPs_103326 0 0 1 0 0 nucleolus 0.500230695974605 0.500231643921467 0 1.89589372445731e-06 hm5C_site_56471 DeepMRMD:0;iRNA_m5C:1.89589372445731e-06 56472 chr6 117246731 117246731 1 + C A LGG 117246727 + 117246707 117246747 41 GAATGAAAGCCACGTGGAGACAACCTATCTCCCTCTGCCAT GAATGAAAGCCACGTGGAGACAACATATCTCCCTCTGCCAT < 41bp 0.370317050568225 0.784186236234592 0.017507672 0.08105579 prediction 0.568372472469183 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117246727 chr6:117246731 synonymous SNV . 0 25 hm5C_associated_SNPs_103327 0 0 0 0 1 membrane 0.50023164399007 0.500231643131351 0 0 hm5C_site_56472 DeepMRMD:0;iRNA_m5C:0 56473 chr12 5021311 5021311 1 + T G SKCM 5021309 + 5021289 5021329 41 TTCTTCAAAAACATCATGAACTTCATAGACATTGTGGCCAT TTCTTCAAAAACATCATGAACTGCATAGACATTGTGGCCAT < 41bp 0.475387006187451 0.784185908611399 0.26446217 0.2678191 prediction 0.568371817222799 Functional Gain - KCNA1 ENSG00000111262 CDS Human protein_coding chr12:5021309 chr12:5021311 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_103328 0 0 0 0 0 unknown 0.500268748198788 0.500230739835613 0 0 hm5C_site_56473 DeepMRMD:0;iRNA_m5C:0 Parkinson's disease 56474 chr13 111372046 111372046 1 + C A UCEC 111372042 + 111372022 111372062 41 GAGCGAGAGGCGTCCCCTGCCGACCTCCCCATCGACCCCAA GAGCGAGAGGCGTCCCCTGCCGACATCCCCATCGACCCCAA < 41bp 0.624481018136839 0.9086569968078 0.11226112 0.08266285 prediction 0.568351957341923 Functional Gain - ING1 ENSG00000153487 CDS Human protein_coding chr13:111372042 chr13:111372046 nonsynonymous SNV 0.935 3 25 hm5C_associated_SNPs_103329 0 0 0 0 0 Endoplasmic reticulum 0.5002316439471 0.500233079238623 0 2.87058304571097e-06 hm5C_site_56474 DeepMRMD:0;iRNA_m5C:2.87058304571097e-06 56475 chr5 140595835 140595835 1 + T G rs199580863 140595832 + 140595812 140595852 41 TCCTGTTCGTGGCGGTGCGGCTGTGTAGGAGGAGCAGGGCG TCCTGTTCGTGGCGGTGCGGCTGGGTAGGAGGAGCAGGGCG < 41bp 0.605885537724243 0.890061378769527 0.13395673 0.35754108 prediction 0.568351682090568 Functional Gain - PCDHB13 ENSG00000187372 CDS Human protein_coding chr5:140595832 chr5:140595835 nonsynonymous SNV 0.535 1 24 hm5C_associated_SNPs_103330 0 0 0 0 0 exosome 0.500231643486993 0.500231643923646 0 8.73306538196061e-10 hm5C_site_56475 DeepMRMD:0;iRNA_m5C:8.73306538196061e-10 56476 chr1 202156432 202156432 1 + C A rs573486133 202156428 + 202156408 202156448 41 TCTCTGTGATGAACTTCGCACAGGCGTGTGCCAAGAGGGCA TCTCTGTGATGAACTTCGCACAGGAGTGTGCCAAGAGGGCA < 41bp 0.435304452938837 0.784174758953537 0.5171149 0.62104535 prediction 0.568349517907074 Functional Gain - PTPRVP ENSG00000243323 ncRNA_exonic Human processed_transcript chr1:202156428 chr1:202156432 . . 0 25 hm5C_associated_SNPs_103331 0 0 1 0 2 unknown 0.500227818311425 0.500231747398894 0.2078609 7.85817493764718e-06 hm5C_site_56476 DeepMRMD:0.2078609;iRNA_m5C:7.85817493764718e-06 56477 chr12 7080040 7080040 1 + C A COAD 7080036 + 7080016 7080056 41 GGAAATTTGTGATTAGAAGCCGCGCTGTTCTTATTTAAGAG GGAAATTTGTGATTAGAAGCCGCGATGTTCTTATTTAAGAG < 41bp 0.42163172279456 0.784165835342374 0.15575892 0.09589738 prediction 0.568331670684747 Functional Gain - EMG1 ENSG00000126749 UTR5 Human protein_coding chr12:7080036 chr12:7080040 . . 0 25 hm5C_associated_SNPs_103332 0 0 0 0 0 Cytosol 0.500231648466478 0.500231632182374 0 0 hm5C_site_56477 DeepMRMD:0;iRNA_m5C:0 56478 chr5 140553782 140553782 1 + T A CESC 140553778 + 140553758 140553798 41 GCTCCCGCCTTCACCCAAACCTCCTACACCCTGTTTGTCCG GCTCCCGCCTTCACCCAAACCTCCAACACCCTGTTTGTCCG < 41bp 0.567753019058734 0.851897568311604 0.097093344 0.9681559 prediction 0.56828909850574 Functional Gain - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140553778 chr5:140553782 nonsynonymous SNV 0.591 3 25 hm5C_associated_SNPs_103333 0 0 0 0 0 exosome 0.500231643921092 0.500231643921114 0.9363118 4.21884749357559e-14 hm5C_site_56478 DeepMRMD:0.9363118;iRNA_m5C:4.21884749357559e-14 Type 1 diabetes 56479 chr19 30935470 30935470 1 + C G STAD 30935469 + 30935449 30935489 41 AGTCGGCCCAGGGCCAGGGCCCCAACGGCGGTGGCGAGCAG AGTCGGCCCAGGGCCAGGGCCGCAACGGCGGTGGCGAGCAG < 41bp 0.545969583998623 0.83010502441981 0.3518885 0.47321695 prediction 0.568270880842373 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935469 chr19:30935470 nonsynonymous SNV 0.891 2 22 hm5C_associated_SNPs_103334 0 0 0 0 0 exosome 0.500231643919881 0.500231638723404 0 0 hm5C_site_56479 DeepMRMD:0;iRNA_m5C:0 56480 chr1 6646057 6646057 1 + T G STAD 6646055 + 6646035 6646075 41 GGAAGGAGAACCTCCTGGAGCATGAAGCCCGGAATTGCATG GGAAGGAGAACCTCCTGGAGCAGGAAGCCCGGAATTGCATG < 41bp 0.466099749874583 0.784132614005693 0.30084938 0.503697 prediction 0.568265228011385 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6646055 chr1:6646057 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103335 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921108 0.0073939999999999 3.08642000845794e-14 hm5C_site_56480 DeepMRMD:0.0073939999999999;iRNA_m5C:3.08642000845794e-14 56481 chr12 10342551 10342551 1 + C A LUSC 10342547 + 10342527 10342567 41 AGGATCCTGGCTGTGGCTCACTCCCACAGCTCCCTGGGCCA AGGATCCTGGCTGTGGCTCACTCCAACAGCTCCCTGGGCCA < 41bp 0.628564919074232 0.9126868387297 0.14917037 0.9690248 prediction 0.568243839310937 Functional Gain - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10342547 chr12:10342551 nonsynonymous SNV 0.869 1 25 hm5C_associated_SNPs_103336 0 0 0 0 1 nucleus 0.500231643921235 0.500231643920631 0.9380496 0 hm5C_site_56481 DeepMRMD:0.9380496;iRNA_m5C:0 56482 chr9 136405803 136405803 1 + C A MESO 136405799 + 136405779 136405819 41 CAGCGGCAGCTCATGGTCCCCGCCCGCGACGGCACATCCTG CAGCGGCAGCTCATGGTCCCCGCCAGCGACGGCACATCCTG < 41bp 0.366885664254027 0.784111860373229 0.016456455 0.060595423 prediction 0.568223720746458 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136405799 chr9:136405803 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_103337 0 0 0 0 2 exosome 0.500231643717698 0.500232168839396 0 1.05024339580595e-06 hm5C_site_56482 DeepMRMD:0;iRNA_m5C:1.05024339580595e-06 56483 chr19 14640495 14640495 1 + C A HNSC 14640491 + 14640471 14640511 41 CAGCAGCCGCGGAGCAGTAGCCGCCGTGGGAGGGAGCCATG CAGCAGCCGCGGAGCAGTAGCCGCAGTGGGAGGGAGCCATG < 41bp 0.498525605818427 0.784088493526979 0.4388242 0.4901504 prediction 0.568176987053958 Functional Gain - TECR ENSG00000099797;ENSG00000132002 UTR5 Human other chr19:14640491 chr19:14640495 . . 0 25 hm5C_associated_SNPs_103338 0 0 1 0 1 Ribosome 0.500231643921088 0.50023164392109 0 4.21884749357559e-15 hm5C_site_56483 DeepMRMD:0;iRNA_m5C:4.21884749357559e-15 56484 chr7 87563794 87563794 1 + T G rs201972241 87563791 + 87563771 87563811 41 CGGCAGCACCATGCAGGCGGCAGTGGCTGTGTCCGTGCCCT CGGCAGCACCATGCAGGCGGCAGGGGCTGTGTCCGTGCCCT < 41bp 0.430821107491005 0.784069833463659 0.7969959 0.9121959 prediction 0.568139666927318 Functional Gain - ADAM22 ENSG00000008277 CDS Human protein_coding chr7:87563791 chr7:87563794 nonsynonymous SNV 0.791 0 24 hm5C_associated_SNPs_103339 0 0 1 0 1 cytosol 0.50023164536774 0.500231643922769 0.2304 0 hm5C_site_56484 DeepMRMD:0.2304;iRNA_m5C:0 56485 chr12 644365 644365 1 + T G COAD 644362 + 644342 644382 41 CTGGAGAGAACTGGCCAAGGCTCTGGCCAGCAGGAACATTC CTGGAGAGAACTGGCCAAGGCTCGGGCCAGCAGGAACATTC < 41bp 0.396704917417713 0.784066147642171 0.29962486 0.32693666 prediction 0.568132295284342 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:644362 chr12:644365 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_103340 0 0 0 0 1 exosome 0.50023164392141 0.500231643921092 0 0 hm5C_site_56485 DeepMRMD:0;iRNA_m5C:0 56486 chr6 74073542 74073542 1 + C A STAD 74073538 + 74073518 74073558 41 GCTGCCAGCAAGGCAGTGACCCAGCGGTTTCGCGAGGATGC GCTGCCAGCAAGGCAGTGACCCAGAGGTTTCGCGAGGATGC < 41bp 0.602024232592755 0.886086782986563 0.58000004 0.84841716 prediction 0.568125100787615 Functional Gain - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74073538 chr6:74073542 synonymous SNV . 0 25 hm5C_associated_SNPs_103341 0 0 0 0 0 unknown 0.500231232689708 0.500231846346291 0.53683424 1.22731316687386e-06 hm5C_site_56486 DeepMRMD:0.53683424;iRNA_m5C:1.22731316687386e-06 56487 chr16 30593995 30593995 1 + C A BRCA 30593991 + 30593971 30594011 41 CACCACGGCCTGCTGCCACGCGCGCCTCTCGCTGCAGGAGC CACCACGGCCTGCTGCCACGCGCGACTCTCGCTGCAGGAGC < 41bp 0.59861777264477 0.882673562418629 0.041050762 0.06775066 prediction 0.568111579547718 Functional Gain - ZNF785 ENSG00000197162 CDS Human protein_coding chr16:30593991 chr16:30593995 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_103342 0 0 0 0 0 Nucleus 0.500231759211524 0.500231673580234 0 0 hm5C_site_56487 DeepMRMD:0;iRNA_m5C:0 56488 chr16 20429546 20429546 1 + C A rs144548629 20429542 + 20429522 20429562 41 GACAGAATGATGCTGGTACTCCCACGGCTCCCGGAGTGGTG GACAGAATGATGCTGGTACTCCCAAGGCTCCCGGAGTGGTG < 41bp 0.37553645354887 0.784048609714545 0.21491244 0.22457367 prediction 0.568097219429091 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20429542 chr16:20429546 synonymous SNV . 0 25 hm5C_associated_SNPs_103343 0 0 0 0 1 cytosol 0.500231643921044 0.500231643921092 0 9.76996261670138e-14 hm5C_site_56488 DeepMRMD:0;iRNA_m5C:9.76996261670138e-14 56489 chr1 33071249 33071249 1 + T G rs566663529 33071246 + 33071226 33071266 41 AACTCAGGAGGCGGAGGTTGCAGTGAGCCAAGATCACGCTA AACTCAGGAGGCGGAGGTTGCAGGGAGCCAAGATCACGCTA < 41bp 0.50681366972597 0.790861793025574 0.91567135 0.9455197 prediction 0.568096246599207 Functional Gain - ZBTB8A ENSG00000160062 UTR3 Human protein_coding chr1:33071246 chr1:33071249 . . 0 24 hm5C_associated_SNPs_103344 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.0596966999999999 0 hm5C_site_56489 DeepMRMD:0.0596966999999999;iRNA_m5C:0 56490 chr17 59477583 59477583 1 + T A HNSC 59477579 + 59477559 59477599 41 GCCAGCGCCATGGCTTACCACCCGTTCCACGCGCCACGGCC GCCAGCGCCATGGCTTACCACCCGATCCACGCGCCACGGCC < 41bp 0.488739327390287 0.784021951925173 0.050966352 0.20448619 prediction 0.568043903850346 Functional Gain - TBX2 ENSG00000121068 CDS Human protein_coding chr17:59477579 chr17:59477583 nonsynonymous SNV 0.986 3 25 hm5C_associated_SNPs_103345 0 0 1 0 0 Cytosol 0.500231643998025 0.500231643928153 0 0 hm5C_site_56490 DeepMRMD:0;iRNA_m5C:0 56491 chr14 77236320 77236320 1 + T A GBM 77236316 + 77236296 77236336 41 CTGTCCCCAGATCCCCATACCGAGTGTGCCTACGTTCCAGC CTGTCCCCAGATCCCCATACCGAGAGTGCCTACGTTCCAGC < 41bp 0.54458496198538 0.828597843965234 0.7454158 0.93829834 prediction 0.568025763959709 Functional Gain - VASH1 ENSG00000071246 CDS Human protein_coding chr14:77236316 chr14:77236320 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103346 0 0 1 0 2 Endoplasmic reticulum 0.500231643949758 0.500231643921096 0.38576508 0 hm5C_site_56491 DeepMRMD:0.38576508;iRNA_m5C:0 56492 chr2 198365925 198365925 1 + C A SARC 198365921 + 198365901 198365941 41 AATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTCGCTGTT AATCTCAAGGAAAAGTATTGCAAGAAACAGTAGTCGCTGTT < 41bp 0.384595167725572 0.783985287467417 0.2288306 0.7609597 prediction 0.567970574934834 Functional Gain - HSPE1;HSPE1-MOB4 ENSG00000115541;ENSG00000270757 CDS Human other chr2:198365921 chr2:198365925 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_103347 0 0 0 0 1 unknown 0.500227940679314 0.500231644227161 0.5219194 7.40709569391207e-06 hm5C_site_56492 DeepMRMD:0.5219194;iRNA_m5C:7.40709569391207e-06 56493 chr20 30412101 30412101 1 + C G rs41293106 30412100 + 30412080 30412120 41 CTGTACCTGCATGGAGAAAGCCACAGGCCTCAAGCTGGCAG CTGTACCTGCATGGAGAAAGCGACAGGCCTCAAGCTGGCAG < 41bp 0.548313112100733 0.832282400638133 0.36640936 0.38694856 prediction 0.567938577074799 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30412100 chr20:30412101 synonymous SNV . 0 22 hm5C_associated_SNPs_103348 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56493 DeepMRMD:0;iRNA_m5C:0 56494 chr11 64217040 64217040 1 + C A rs192715586 64217036 + 64217016 64217056 41 CATGGCTGGTCTGGCAGCTGCTGTCGGTGTCGCGACCCCAC CATGGCTGGTCTGGCAGCTGCTGTAGGTGTCGCGACCCCAC < 41bp 0.403779951553143 0.783952351445342 0.19336408 0.38237086 prediction 0.567904702890685 Functional Gain - LOC100996455 ENSG00000181908 CDS Human lincRNA chr11:64217036 chr11:64217040 synonymous SNV . 0 25 hm5C_associated_SNPs_103349 0 0 0 0 1 unknown 0.500231643921109 0.500231769772671 0 2.51703125009328e-07 hm5C_site_56494 DeepMRMD:0;iRNA_m5C:2.51703125009328e-07 56495 chr15 90168095 90168095 1 + T A LUAD 90168091 + 90168071 90168111 41 TCCTTCCTGTGGGCCTGGCTCTCCTCTGATGCCTTCCCGTG TCCTTCCTGTGGGCCTGGCTCTCCACTGATGCCTTCCCGTG < 41bp 0.443201023356405 0.783952004523618 0.12950954 0.9461728 prediction 0.567904009047237 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90168091 chr15:90168095 synonymous SNV . 0 25 hm5C_associated_SNPs_103350 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921093 0.8923456 6.66133814775094e-16 hm5C_site_56495 DeepMRMD:0.8923456;iRNA_m5C:6.66133814775094e-16 56496 chr5 176491739 176491739 1 + C G rs144050595 176491735 + 176491715 176491755 41 AGGCAGGATTGGGCCACAGACAGCCTCTCATTGGTCCGGGC AGGCAGGATTGGGCCACAGACAGCGTCTCATTGGTCCGGGC < 41bp 0.504104473998122 0.788055341651164 0.35675323 0.6252111 prediction 0.567901735306082 Functional Gain - ZNF346 ENSG00000113761 UTR3 Human protein_coding chr5:176491735 chr5:176491739 . . 0 25 hm5C_associated_SNPs_103351 0 0 0 1 0 chromatin 0.500231643921091 0.500231643973408 0.2504222 1.04632746911193e-10 hm5C_site_56496 DeepMRMD:0.2504222;iRNA_m5C:1.04632746911193e-10 56497 chr16 89627460 89627460 1 + T G rs2280370 89627458 + 89627438 89627478 41 CGTGGTTCAACCAGCCGGCCCGTAAGATCCGCAGGTGAGCC CGTGGTTCAACCAGCCGGCCCGGAAGATCCGCAGGTGAGCC < 41bp 0.454249773284514 0.783941179216596 0.17595801 0.5634047 prediction 0.567882358433192 Functional Gain - RPL13 ENSG00000167526 CDS Human protein_coding chr16:89627458 chr16:89627460 synonymous SNV . 0 23 hm5C_associated_SNPs_103352 0 0 1 0 1 Cytosol 0.500231643897587 0.500231643917857 0.1268094 4.05402378333974e-11 hm5C_site_56497 DeepMRMD:0.1268094;iRNA_m5C:4.05402378333974e-11 56498 chr12 38710774 38710774 1 + T A OV 38710770 + 38710750 38710790 41 GTGTCCTGCCTCCTCTTCTCCGCCTTCAGCCGGGCGCTGCG GTGTCCTGCCTCCTCTTCTCCGCCATCAGCCGGGCGCTGCG < 41bp 0.540814295148897 0.824754020029265 0.06717476 0.3467124 prediction 0.567879449760736 Functional Gain - ALG10B ENSG00000175548 CDS Human protein_coding chr12:38710770 chr12:38710774 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103353 0 0 1 0 1 Nucleus 0.500231643921093 0.500231643921179 0 1.738609256563e-13 hm5C_site_56498 DeepMRMD:0;iRNA_m5C:1.738609256563e-13 56499 chr11 55944267 55944267 1 + C A LUSC 55944263 + 55944243 55944283 41 AATCACCTCCAAACTCCACACACCCATGTACTTTTTACTCA AATCACCTCCAAACTCCACACACCAATGTACTTTTTACTCA < 41bp 0.389702388960572 0.783928683263056 0.0016708672 0.015282601 prediction 0.567857366526111 Functional Gain - OR5J2 ENSG00000174957 CDS Human protein_coding chr11:55944263 chr11:55944267 synonymous SNV . 0 25 hm5C_associated_SNPs_103354 0 0 0 0 0 unknown 0.500231674285648 0.500231640540377 0 0 hm5C_site_56499 DeepMRMD:0;iRNA_m5C:0 56500 chr1 204042338 204042338 1 + C G rs575414167 204042337 + 204042317 204042357 41 CCTGGAACCCGGGCCCAGAACCGGCGAGCCCAGGTCTGAGC CCTGGAACCCGGGCCCAGAACGGGCGAGCCCAGGTCTGAGC < 41bp 0.507682333307595 0.791605741230462 0.8527293 0.8829067 prediction 0.567846815845734 Functional Gain - SOX13 ENSG00000143842 upstream Human protein_coding chr1:204042337 chr1:204042338 . . 0 22 hm5C_associated_SNPs_103355 0 0 1 0 0 nucleus 0.500231643783277 0.500231643576198 0.0603548 0 hm5C_site_56500 DeepMRMD:0.0603548;iRNA_m5C:0 56501 chr19 54372742 54372742 1 + C G rs531350263 54372741 + 54372721 54372761 41 CAGCCGCCGCCCAGGGTTCTCCCGCCACTGCCGCCCGCACC CAGCCGCCGCCCAGGGTTCTCGCGCCACTGCCGCCCGCACC < 41bp 0.508973189766438 0.79288767995554 0.87842864 0.88720596 prediction 0.567828980378202 Functional Gain - MYADM ENSG00000179820 UTR5 Human protein_coding chr19:54372741 chr19:54372742 . . 0 22 hm5C_associated_SNPs_103356 0 0 0 0 0 Nucleus 0.500231643344283 0.500231643921089 0.01755464 1.15361342700737e-09 hm5C_site_56501 DeepMRMD:0.01755464;iRNA_m5C:1.15361342700737e-09 56502 chr2 74781871 74781871 1 + C G rs13416172 74781870 + 74781850 74781890 41 GCCAGGAAGCGCGGAAGGAACCGCCGGGGGCCATGGACGGA GCCAGGAAGCGCGGAAGGAACGGCCGGGGGCCATGGACGGA < 41bp 0.518962243931167 0.802869954405426 0.3535064 0.3786543 prediction 0.567815420948518 Functional Gain - DOK1 ENSG00000115325 UTR5 Human protein_coding chr2:74781870 chr2:74781871 . . 0 22 hm5C_associated_SNPs_103357 0 0 0 0 1 Cytosol 0.500231643943602 0.500231643921072 0 0 hm5C_site_56502 DeepMRMD:0;iRNA_m5C:0 56503 chr17 37826728 37826728 1 + C A rs5644 37826724 + 37826704 37826744 41 CCTAATAAAGAAATAATACCCTGCCGCTGCGGTCAGTGCTG CCTAATAAAGAAATAATACCCTGCAGCTGCGGTCAGTGCTG < 41bp 0.507056213428866 0.790954789720311 0.074885935 0.14732823 prediction 0.56779715258289 Functional Gain - PNMT ENSG00000141744 UTR3 Human protein_coding chr17:37826724 chr17:37826728 . . 0 25 hm5C_associated_SNPs_103358 0 0 0 0 0 Cytosol 0.500231643921081 0.500212063810721 0 0 hm5C_site_56503 DeepMRMD:0;iRNA_m5C:0 56504 chr5 50124193 50124193 1 + T A UCEC 50124189 + 50124169 50124209 41 ACTCCATCCTGAGGAATGGTCTGGTTGTTGCTTCTAATACA ACTCCATCCTGAGGAATGGTCTGGATGTTGCTTCTAATACA < 41bp 0.474092441827981 0.783891269885884 0.13462543 0.24452776 prediction 0.567782539771768 Functional Gain - PARP8 ENSG00000151883 CDS Human protein_coding chr5:50124189 chr5:50124193 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103359 0 0 0 0 2 Nucleus 0.500231643917087 0.500231643919442 0 4.71134242729931e-12 hm5C_site_56504 DeepMRMD:0;iRNA_m5C:4.71134242729931e-12 56505 chr2 155102434 155102434 1 + T G UCEC 155102431 + 155102411 155102451 41 TTAACTGGAAACTGAATTTCCGCTGGTATCCTGTTCCCCAA TTAACTGGAAACTGAATTTCCGCGGGTATCCTGTTCCCCAA < 41bp 0.575539408789243 0.859420845502737 0.12944591 0.8016691 prediction 0.567762873426988 Functional Gain - GALNT13 ENSG00000144278 CDS Human protein_coding chr2:155102431 chr2:155102434 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_103360 0 0 1 0 1 Nucleus 0.500231643921093 0.500231643921092 0.6033382 0 hm5C_site_56505 DeepMRMD:0.6033382;iRNA_m5C:0 56506 chr7 99051717 99051717 1 + C A rs139528752 99051713 + 99051693 99051733 41 GCAGAGTCAAAACAGCAGCGCGGGCAACCGGGGACCCCGGC GCAGAGTCAAAACAGCAGCGCGGGAAACCGGGGACCCCGGC < 41bp 0.622321664192294 0.906198225181046 0.8971172 0.90886635 prediction 0.567753121977503 Functional Gain - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99051713 chr7:99051717 nonsynonymous SNV 0.980 0 25 hm5C_associated_SNPs_103361 0 0 1 0 3 chromatin 0.500231643921092 0.500231643921092 0.0234983000000002 0 hm5C_site_56506 DeepMRMD:0.0234983000000002;iRNA_m5C:0 56507 chr16 20435283 20435283 1 + T A LUSC 20435279 + 20435259 20435299 41 ATCTGACATCTTCTGGAACACGACTGACACTGGCTGGGTGA ATCTGACATCTTCTGGAACACGACAGACACTGGCTGGGTGA < 41bp 0.551520389707111 0.835394653463886 0.06734374 0.1954532 prediction 0.56774852751355 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20435279 chr16:20435283 synonymous SNV . 0 25 hm5C_associated_SNPs_103362 0 0 1 0 1 cytosol 0.50023164392104 0.500231643921092 0 1.03472785895065e-13 hm5C_site_56507 DeepMRMD:0;iRNA_m5C:1.03472785895065e-13 Smoking status (ever vs never smokers) 56508 chr11 10500150 10500150 1 + C G rs369104893 10500149 + 10500129 10500169 41 AGCAAGATTGGAAGGGCCCCCCGGCAGCCAGTCCGGCCATG AGCAAGATTGGAAGGGCCCCCGGGCAGCCAGTCCGGCCATG < 41bp 0.485439157664517 0.783865378013242 0.36331928 0.89403 prediction 0.567730756026483 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10500149 chr11:10500150 nonsynonymous SNV 0.753 1 22 hm5C_associated_SNPs_103363 0 0 0 0 1 Cytosol 0.500231643921887 0.500231643921092 0.78806 0 hm5C_site_56508 DeepMRMD:0.78806;iRNA_m5C:0 56509 chr11 70007770 70007770 1 + T C rs2186797 70007768 + 70007748 70007788 41 AGCTTTGAGGAGAGGCTGATCTTCAAGGCTTTCCTGCTGAA AGCTTTGAGGAGAGGCTGATCTCCAAGGCTTTCCTGCTGAA < 41bp 0.490200050771282 0.783856751003728 0.13022497 0.9659138 prediction 0.567713502007457 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70007768 chr11:70007770 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_103364 0 0 0 1 2 Cytosol 0.500231645029558 0.500231648910856 0.9318276 7.76259656554146e-09 hm5C_site_56509 DeepMRMD:0.9318276;iRNA_m5C:7.76259656554146e-09 56510 chr19 53990010 53990010 1 + T G SKCM 53990008 + 53989988 53990028 41 AATTATAGGAACCTGGTCTCCCTGGGTGAGGATAACTTCCC AATTATAGGAACCTGGTCTCCCGGGGTGAGGATAACTTCCC < 41bp 0.571561469254128 0.855417505912034 0.31900823 0.92301357 prediction 0.567712073315814 Functional Gain - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53990008 chr19:53990010 nonsynonymous SNV 0.420 3 23 hm5C_associated_SNPs_103365 0 0 0 0 1 nucleolus 0.500231718515449 0.500231647972227 0.84602714 0 hm5C_site_56510 DeepMRMD:0.84602714;iRNA_m5C:0 Type II Diabetes Mellitus 56511 chr19 57804114 57804114 1 + T G rs138081768 57804111 + 57804091 57804131 41 CCTCATCCCCTTTATTTTCCCTGTGTATACATTCACTGCTG CCTCATCCCCTTTATTTTCCCTGGGTATACATTCACTGCTG < 41bp 0.435573061909982 0.783850242775808 0.10022086 0.36706722 prediction 0.567700485551616 Functional Gain - ZNF460 ENSG00000197714 UTR3 Human protein_coding chr19:57804111 chr19:57804114 . . 0 24 hm5C_associated_SNPs_103366 0 0 1 2 0 Nucleus 0.500231643920935 0.500231643921093 0 3.14193115968919e-13 hm5C_site_56511 DeepMRMD:0;iRNA_m5C:3.14193115968919e-13 56512 chr7 2646819 2646819 1 + C A rs200327205 2646815 + 2646795 2646835 41 AGGAGGAGATCGGCTTCAGCCACACACGGGGACGCCTCCTC AGGAGGAGATCGGCTTCAGCCACAAACGGGGACGCCTCCTC < 41bp 0.378883764530564 0.783845204521003 0.11233324 0.19442114 prediction 0.567690409042005 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2646815 chr7:2646819 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_103367 0 0 0 0 2 chromatin 0.500231906380696 0.500231644677727 0 0 hm5C_site_56512 DeepMRMD:0;iRNA_m5C:0 56513 chr10 101715524 101715524 1 + C A UCEC 101715520 + 101715500 101715540 41 AAAGTGGCGTAAAATTTTATCTGGCTCTGTGCCGGGCCCTG AAAGTGGCGTAAAATTTTATCTGGATCTGTGCCGGGCCCTG < 41bp 0.618961128239273 0.902806136122096 0.017866373 0.06787041 prediction 0.567690015765645 Functional Gain - DNMBP ENSG00000107554 CDS Human protein_coding chr10:101715520 chr10:101715524 nonsynonymous SNV 0.148 0 25 hm5C_associated_SNPs_103368 0 0 0 0 2 Nucleus 0.500231643921212 0.500231643921112 0 0 hm5C_site_56513 DeepMRMD:0;iRNA_m5C:0 56514 chr11 55587842 55587842 1 + T A LUAD 55587838 + 55587818 55587858 41 CCTTCTCCACCTGTGCCTCCCACCTGACTGCCATCACCATC CCTTCTCCACCTGTGCCTCCCACCAGACTGCCATCACCATC < 41bp 0.54079028492897 0.82462179657095 0.036404997 0.023068279 prediction 0.56766302328396 Functional Gain - OR5D18 ENSG00000186119 CDS Human protein_coding chr11:55587838 chr11:55587842 nonsynonymous SNV 0.915 3 25 hm5C_associated_SNPs_103369 0 0 0 0 0 unknown 0.50023138924165 0.500230701908266 0 0 hm5C_site_56514 DeepMRMD:0;iRNA_m5C:0 56515 chr5 178450888 178450888 1 + C A rs555317229 178450884 + 178450864 178450904 41 GTGCGGTGTGGAGCTGCGCGCCCCCCGCCGAGGCGGGCCCA GTGCGGTGTGGAGCTGCGCGCCCCACGCCGAGGCGGGCCCA < 41bp 0.517401839901512 0.801221290004823 0.049245328 0.045280665 prediction 0.567638900206623 Functional Gain - ZNF879 ENSG00000234284 UTR5 Human protein_coding chr5:178450884 chr5:178450888 . . 0 25 hm5C_associated_SNPs_103370 0 0 0 0 1 exosome 0.500233302094145 0.500231643921093 0 0 hm5C_site_56515 DeepMRMD:0;iRNA_m5C:0 56516 chr5 180661180 180661180 1 + T G STAD 180661178 + 180661158 180661198 41 CTCCCTCCCTCCCAAGTGGACCTGACGCTGGACCCTGACAC CTCCCTCCCTCCCAAGTGGACCGGACGCTGGACCCTGACAC < 41bp 0.48730049664681 0.783818420223331 0.28511494 0.4568342 prediction 0.567636840446662 Functional Gain - TRIM41 ENSG00000146063 CDS Human protein_coding chr5:180661178 chr5:180661180 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_103371 0 0 1 0 1 chromatin 0.500231642049068 0.500231643919483 0 3.74083009013759e-09 hm5C_site_56516 DeepMRMD:0;iRNA_m5C:3.74083009013759e-09 56517 chr17 39564954 39564954 1 + C A LUAD 39564950 + 39564930 39564970 41 CTCCAGCTGGGCCTCCAGGTCACACTTGGCGAGGGTGAGGT CTCCAGCTGGGCCTCCAGGTCACAATTGGCGAGGGTGAGGT < 41bp 0.407728952861456 0.783805643901816 0.07190341 0.046905547 prediction 0.567611287803633 Functional Gain - LOC100505782 ENSG00000225438;ENSG00000234859 ncRNA_exonic Human other chr17:39564950 chr17:39564954 . . 0 25 hm5C_associated_SNPs_103372 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_56517 DeepMRMD:0;iRNA_m5C:0 56518 chr7 135373726 135373726 1 + T G rs148576076 135373724 + 135373704 135373744 41 GCTCACTGCAGCTTTGAACTCCTGGGCTCAAGCGATCCTCT GCTCACTGCAGCTTTGAACTCCGGGGCTCAAGCGATCCTCT < 41bp 0.44915219773807 0.783789544723969 0.25769037 0.9045439 prediction 0.567579089447938 Functional Gain - SLC13A4 ENSG00000164707 intronic Human protein_coding chr7:135373724 chr7:135373726 . . 0 23 hm5C_associated_SNPs_103373 0 0 0 0 2 chromatin 0.500231643916291 0.500231643921747 0.8090878 1.09137143766702e-11 hm5C_site_56518 DeepMRMD:0.8090878;iRNA_m5C:1.09137143766702e-11 56519 chr14 69814677 69814677 1 + C G rs186654489 69814676 + 69814656 69814696 41 CTTAATGTCCTCCCCTGGATCCCCAGTCATACTGCAGATGT CTTAATGTCCTCCCCTGGATCGCCAGTCATACTGCAGATGT < 41bp 0.531311573367126 0.815071325156112 0.014965892 0.40274104 prediction 0.567519503577972 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69814676 chr14:69814677 synonymous SNV . 0 22 hm5C_associated_SNPs_103374 0 0 0 0 2 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_56519 DeepMRMD:0;iRNA_m5C:0 56520 chr4 134073619 134073619 1 + C A HNSC 134073615 + 134073595 134073635 41 GTTCGACCTGCTGTGGCCGCCAAGCCCGGGCGCGCAAGAAG GTTCGACCTGCTGTGGCCGCCAAGACCGGGCGCGCAAGAAG < 41bp 0.393680840256948 0.783745541725551 0.8744024 0.766136 prediction 0.567491083451102 Functional Gain - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134073615 chr4:134073619 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_103375 0 0 0 0 0 cytosol 0.500231643921093 0.500231643921092 0 0 hm5C_site_56520 DeepMRMD:0;iRNA_m5C:0 56521 chrX 19377810 19377810 1 + C G rs111666443 19377809 + 19377789 19377829 41 GTTATACCTTCAGGGGGCTACCAGACAGTGTTCTCAACTTG GTTATACCTTCAGGGGGCTACGAGACAGTGTTCTCAACTTG < 41bp 0.52908525199579 0.812818730280688 0.08917281 0.26490992 prediction 0.567466956569795 Functional Gain - PDHA1 ENSG00000131828 UTR3 Human protein_coding chrX:19377809 chrX:19377810 . . 0 22 hm5C_associated_SNPs_103376 0 0 1 2 0 Ribosome 0.500231643921092 0.500231643921001 0 0 hm5C_site_56521 DeepMRMD:0;iRNA_m5C:0 56522 chr10 134218296 134218296 1 + C A rs10747057 134218292 + 134218272 134218312 41 GGGGTTCAGCCCCCCGAGACCACCCGCCCCGAGCCACCCCC GGGGTTCAGCCCCCCGAGACCACCAGCCCCGAGCCACCCCC < 41bp 0.607309439906213 0.891035020349186 0.037989676 0.15138263 prediction 0.567451160885946 Functional Gain - PWWP2B ENSG00000171813 CDS Human protein_coding chr10:134218292 chr10:134218296 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103377 0 0 0 0 0 chromatin 0.500231643921099 0.500227596326446 0 0 hm5C_site_56522 DeepMRMD:0;iRNA_m5C:0 56523 chr2 138771422 138771422 1 + T A OV 138771418 + 138771398 138771438 41 GATGACCTCTGCCAGTATATCACATCAGATGACCTCACTCA GATGACCTCTGCCAGTATATCACAACAGATGACCTCACTCA < 41bp 0.544034647467411 0.82775912562364 0.29530656 0.27700207 prediction 0.567448956312457 Functional Gain - HNMT ENSG00000150540 CDS Human protein_coding chr2:138771418 chr2:138771422 nonsynonymous SNV 0.144 1 25 hm5C_associated_SNPs_103378 0 0 1 0 1 Cytosol 0.50023186047218 0.500232314998058 0 9.09051756980972e-07 hm5C_site_56523 DeepMRMD:0;iRNA_m5C:9.09051756980972e-07 56524 chr17 61611405 61611405 1 + C A rs35995591 61611401 + 61611381 61611421 41 GGCTGTCTTCACGCCCTACTCAGCCGCCTTCCTGCTCAGCG GGCTGTCTTCACGCCCTACTCAGCAGCCTTCCTGCTCAGCG < 41bp 0.632102656380303 0.915801388548479 0.9021646 0.91142917 prediction 0.567397464336351 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61611401 chr17:61611405 synonymous SNV . 0 25 hm5C_associated_SNPs_103379 0 0 0 0 0 unknown 0.500231643921091 0.500231643921093 0.0185291400000001 3.33066907387547e-15 hm5C_site_56524 DeepMRMD:0.0185291400000001;iRNA_m5C:3.33066907387547e-15 56525 chr9 124064328 124064328 1 + C A HNSC 124064324 + 124064304 124064344 41 ATCTGGCGTGTGGAGAAGTTCGATCTGGTGCCCGTGCCCAC ATCTGGCGTGTGGAGAAGTTCGATATGGTGCCCGTGCCCAC < 41bp 0.396604044741419 0.783693705471211 0.19191813 0.13677645 prediction 0.567387410942422 Functional Gain - GSN ENSG00000148180 CDS Human protein_coding chr9:124064324 chr9:124064328 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_103380 0 0 1 0 1 Cytosol 0.500231643921091 0.500231643921056 0 0 hm5C_site_56525 DeepMRMD:0;iRNA_m5C:0 56526 chr19 10370370 10370370 1 + C A rs202218040 10370366 + 10370346 10370386 41 ACCGTCGCCTTCCTGGAGGACAAGCTGCTCTGGCAGGACTC ACCGTCGCCTTCCTGGAGGACAAGATGCTCTGGCAGGACTC < 41bp 0.582729633190528 0.866409573510967 0.10284573 0.20279893 prediction 0.567359880640877 Functional Gain - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10370366 chr19:10370370 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_103381 0 0 1 0 1 Cytosol 0.500231643921093 0.500231650302512 0 1.27628381196843e-08 hm5C_site_56526 DeepMRMD:0;iRNA_m5C:1.27628381196843e-08 56527 chr4 7057415 7057415 1 + C A rs182873023 7057411 + 7057391 7057431 41 CCAGATGACCTTCCATTTCACCGGCGGCAGCAGTTTCAGCG CCAGATGACCTTCCATTTCACCGGAGGCAGCAGTTTCAGCG < 41bp 0.410694190575214 0.783669745979529 0.4808738 0.8181008 prediction 0.567339491959058 Functional Gain - TADA2B ENSG00000173011 UTR3 Human protein_coding chr4:7057411 chr4:7057415 . . 0 25 hm5C_associated_SNPs_103382 0 0 1 0 0 chromatin 0.500231643921313 0.500231643916725 0.6362016 0 hm5C_site_56527 DeepMRMD:0.6362016;iRNA_m5C:0 56528 chr9 37436696 37436696 1 + C G LUAD 37436695 + 37436675 37436715 41 GGCAGTGCCACCCACAGAACCCGCAACACCATGTCCTTGTT GGCAGTGCCACCCACAGAACCGGCAACACCATGTCCTTGTT < 41bp 0.524686044334596 0.808336331450432 0.080971 0.45141408 prediction 0.567300574231671 Functional Gain - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37436695 chr9:37436696 nonsynonymous SNV 0.566 4 22 hm5C_associated_SNPs_103383 0 0 1 0 1 Ribosome 0.500232670676921 0.500231647229761 0 0 hm5C_site_56528 DeepMRMD:0;iRNA_m5C:0 56529 chr17 1201795 1201795 1 + C A rs145861235 1201791 + 1201771 1201811 41 AATGGGTAACGTGGTTTACTCTCCCGGACGCGTCCTGGGAT AATGGGTAACGTGGTTTACTCTCCAGGACGCGTCCTGGGAT < 41bp 0.41136893315292 0.7836483706996 0.6969838 0.93426174 prediction 0.5672967413992 Functional Gain - TUSC5 ENSG00000184811 UTR3 Human protein_coding chr17:1201791 chr17:1201795 . . 0 25 hm5C_associated_SNPs_103384 0 0 0 0 0 exosome 0.500231643929384 0.500231643388855 0.47455588 0 hm5C_site_56529 DeepMRMD:0.47455588;iRNA_m5C:0 56530 chr10 30989187 30989187 1 + C G rs189784783 30989186 + 30989166 30989206 41 GGAGAATGCAATCCGCTTATCCGCAGGTACTACTGCCCCCA GGAGAATGCAATCCGCTTATCGGCAGGTACTACTGCCCCCA < 41bp 0.499893173048328 0.783646319914268 0.6440353 0.91317797 prediction 0.567292639828537 Functional Gain - SVILP1 ENSG00000234814 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:30989186 chr10:30989187 . . 0 22 hm5C_associated_SNPs_103385 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.53828534 0 hm5C_site_56530 DeepMRMD:0.53828534;iRNA_m5C:0 56531 chr16 88706717 88706717 1 + C A rs147491205 88706713 + 88706693 88706733 41 TAAAGCTGCAGAAAAGGTGTCACACGGCTGCCTGTACCTTG TAAAGCTGCAGAAAAGGTGTCACAAGGCTGCCTGTACCTTG < 41bp 0.426794617923665 0.783638815332284 0.15798771 0.24202248 prediction 0.567277630664568 Functional Gain - IL17C ENSG00000124391 UTR3 Human protein_coding chr16:88706713 chr16:88706717 . . 0 25 hm5C_associated_SNPs_103386 0 0 0 0 0 exosome 0.500241521619916 0.50023157779638 0 0 hm5C_site_56531 DeepMRMD:0;iRNA_m5C:0 56532 chr14 100847523 100847523 1 + T A rs2181170 100847519 + 100847499 100847539 41 TTGGCTCAGCTTGGGAGAAGCGATTGGGGATCTTGCCCCAG TTGGCTCAGCTTGGGAGAAGCGATAGGGGATCTTGCCCCAG < 41bp 0.487427310094426 0.783608773288027 0.35039088 0.47074845 prediction 0.567217546576054 Functional Gain - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100847519 chr14:100847523 nonsynonymous SNV 0.090 0 25 hm5C_associated_SNPs_103387 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_56532 DeepMRMD:0;iRNA_m5C:0 56533 chr22 40364155 40364155 1 + C G LUAD 40364151 + 40364131 40364171 41 TGAACCGGAAGCTGTCGGATCACCCCCCGACCCTTCCCCTG TGAACCGGAAGCTGTCGGATCACCGCCCGACCCTTCCCCTG < 41bp 0.517925169336612 0.801533712502375 0.027937204 0.08224431 prediction 0.567217086331524 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40364151 chr22:40364155 nonsynonymous SNV 0.018 1 25 hm5C_associated_SNPs_103388 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_56533 DeepMRMD:0;iRNA_m5C:0 56534 chr4 71114958 71114958 1 + C G LUAD 71114957 + 71114937 71114977 41 CCACCCACTGTGGTACGTCGCCCAAACCTGCATCCATCATT CCACCCACTGTGGTACGTCGCGCAAACCTGCATCCATCATT < 41bp 0.482524970618044 0.783608145816147 0.045351 0.05287212 prediction 0.567216291632294 Functional Gain - CSN3 ENSG00000171209 CDS Human protein_coding chr4:71114957 chr4:71114958 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_103389 0 0 0 0 0 unknown 0.500231643932173 0.500210372736914 0 0 hm5C_site_56534 DeepMRMD:0;iRNA_m5C:0 56535 chr5 156890242 156890242 1 + C G GBM 156890238 + 156890218 156890258 41 CAGAACTATGGCTTCTACATCGGCCTGGGCCTGGCATTCCT CAGAACTATGGCTTCTACATCGGCGTGGGCCTGGCATTCCT < 41bp 0.50862129681211 0.792207777233821 0.7237121 0.938033 prediction 0.567172960843422 Functional Gain - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156890238 chr5:156890242 nonsynonymous SNV 0.994 1 25 hm5C_associated_SNPs_103390 0 0 0 0 1 exosome 0.500231643921092 0.500231643924874 0.4286418 7.56306128835149e-12 hm5C_site_56535 DeepMRMD:0.4286418;iRNA_m5C:7.56306128835149e-12 56536 chr1 111778760 111778760 1 + C A rs180927880 111778756 + 111778736 111778776 41 GGGGTGGCAGGACAGAGGGCCAAGCTCCTACTACAATGTGG GGGGTGGCAGGACAGAGGGCCAAGATCCTACTACAATGTGG < 41bp 0.394019661130066 0.78357816530661 0.13043162 0.17503366 prediction 0.56715633061322 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111778756 chr1:111778760 nonsynonymous SNV 0.951 0 25 hm5C_associated_SNPs_103391 0 0 0 0 1 exosome 0.500231616700838 0.500231240086147 0 0 hm5C_site_56536 DeepMRMD:0;iRNA_m5C:0 56537 chr3 101571988 101571988 1 + T G LIHC 101571985 + 101571965 101572005 41 AGCATGGAAGATGTTCATCTCAATGAACCCAAACAGGAGAG AGCATGGAAGATGTTCATCTCAAGGAACCCAAACAGGAGAG < 41bp 0.401264775306659 0.783570270422853 0.21478474 0.60567087 prediction 0.567140540845705 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101571985 chr3:101571988 nonsynonymous SNV 0.170 1 24 hm5C_associated_SNPs_103392 0 0 1 0 2 Endoplasmic reticulum 0.500231643886311 0.500231643921092 0.21134174 6.95627999647286e-11 hm5C_site_56537 DeepMRMD:0.21134174;iRNA_m5C:6.95627999647286e-11 56538 chr8 123964349 123964349 1 + C G UCEC 123964348 + 123964328 123964368 41 AAGCGGATGCCAAGAAGGTGCCCAAGAAGCCCGAGGAGATC AAGCGGATGCCAAGAAGGTGCGCAAGAAGCCCGAGGAGATC < 41bp 0.494917859466543 0.783569685455925 0.054459512 0.23973653 prediction 0.567139370911851 Functional Gain - ZHX2 ENSG00000178764 CDS Human protein_coding chr8:123964348 chr8:123964349 nonsynonymous SNV 0.992 0 22 hm5C_associated_SNPs_103393 0 0 0 0 0 Nucleus 0.500231643921677 0.500231643921092 0 0 hm5C_site_56538 DeepMRMD:0;iRNA_m5C:0 56539 chr2 28814611 28814611 1 + C A UCEC 28814607 + 28814587 28814627 41 ATGCAGGGACAGAGCCCCTTCTGCCTTGCACCCTACCTCAG ATGCAGGGACAGAGCCCCTTCTGCATTGCACCCTACCTCAG < 41bp 0.377356139002248 0.783562468863648 0.1849572 0.20086053 prediction 0.567124937727295 Functional Gain - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28814607 chr2:28814611 synonymous SNV . 0 25 hm5C_associated_SNPs_103394 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56539 DeepMRMD:0;iRNA_m5C:0 56540 chrX 65393488 65393488 1 + C G LUSC 65393487 + 65393467 65393507 41 AAGCTGATGACTCTGTTCCCCCGGGGGGCAGCCATATCTAC AAGCTGATGACTCTGTTCCCCGGGGGGGCAGCCATATCTAC < 41bp 0.545736281452823 0.829276477488915 0.8773438 0.91790974 prediction 0.567080392072183 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65393487 chrX:65393488 nonsynonymous SNV 0.773 4 22 hm5C_associated_SNPs_103395 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643941627 0.08113188 4.10700362607486e-11 hm5C_site_56540 DeepMRMD:0.08113188;iRNA_m5C:4.10700362607486e-11 56541 chr17 6663737 6663737 1 + C G rs370468679 6663736 + 6663716 6663756 41 CTCCCACAGGCCAATGAGTGCCAGGAGCGCCCTGTTGAGTG CTCCCACAGGCCAATGAGTGCGAGGAGCGCCCTGTTGAGTG < 41bp 0.478571743998478 0.783536609666313 0.89209616 0.9365226 prediction 0.567073219332626 Functional Gain - XAF1 ENSG00000132530 CDS Human protein_coding chr17:6663736 chr17:6663737 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_103396 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.0888528799999999 0 hm5C_site_56541 DeepMRMD:0.0888528799999999;iRNA_m5C:0 56542 chr5 140554127 140554127 1 + C A LUSC 140554123 + 140554103 140554143 41 TACCCGCTGCAGAACAGCTCCGCGCCCTGCACCGAGCCGTT TACCCGCTGCAGAACAGCTCCGCGACCTGCACCGAGCCGTT < 41bp 0.617017600550496 0.90053812003342 0.22390482 0.3128842 prediction 0.567041038965848 Functional Gain - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140554123 chr5:140554127 nonsynonymous SNV 0.469 1 25 hm5C_associated_SNPs_103397 0 0 0 0 0 exosome 0.500231643793586 0.500231640064649 0 0 hm5C_site_56542 DeepMRMD:0;iRNA_m5C:0 56543 chr3 138153821 138153821 1 + T G UCEC 138153819 + 138153799 138153839 41 CTACCTGGGGCTCAGCATAACCTGGTTGCTGCTCGGCGCCC CTACCTGGGGCTCAGCATAACCGGGTTGCTGCTCGGCGCCC < 41bp 0.589485117342264 0.872994750725881 0.31155497 0.90868473 prediction 0.567019266767235 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138153819 chr3:138153821 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_103398 0 0 0 0 0 nucleoplasm 0.500231643921091 0.500231643921102 0.81736946 2.30926389122033e-14 hm5C_site_56543 DeepMRMD:0.81736946;iRNA_m5C:2.30926389122033e-14 56544 chr20 44486288 44486288 1 + C G rs531890542 44486287 + 44486267 44486307 41 ACACCCCCTTCCTCTTGTAACCCGGTCAGGCCTAGGGTTCC ACACCCCCTTCCTCTTGTAACGCGGTCAGGCCTAGGGTTCC < 41bp 0.523950866279642 0.807459756901307 0.1273242 0.3744063 prediction 0.567017781243331 Functional Gain - ZSWIM3 ENSG00000132801 UTR5 Human protein_coding chr20:44486287 chr20:44486288 . . 0 22 hm5C_associated_SNPs_103399 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_56544 DeepMRMD:0;iRNA_m5C:0 56545 chr2 31489094 31489094 1 + C A UCEC 31489090 + 31489070 31489110 41 AAGTTCCAGCCGCTGAAGAGCAAGCTGCTGGAGGTAGTGGA AAGTTCCAGCCGCTGAAGAGCAAGATGCTGGAGGTAGTGGA < 41bp 0.393630621823259 0.783506679287151 0.6780138 0.79967415 prediction 0.567013358574302 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489090 chr2:31489094 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103400 0 0 0 0 1 exosome 0.500210039296766 0.500224346370856 0.2433207 2.86141481802282e-05 hm5C_site_56545 DeepMRMD:0.2433207;iRNA_m5C:2.86141481802282e-05 56546 chr9 133553963 133553963 1 + C A LGG 133553959 + 133553939 133553979 41 GCTGGTGTGGTACGGAAACTCACACAACACCTTCCTGGGGA GCTGGTGTGGTACGGAAACTCACAAAACACCTTCCTGGGGA < 41bp 0.628737496431152 0.912240653820275 0.30479681 0.42584532 prediction 0.567006314778246 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133553959 chr9:133553963 nonsynonymous SNV 0.992 2 25 hm5C_associated_SNPs_103401 0 0 0 0 2 exosome 0.500231637863209 0.500231643921213 0 1.21160070865045e-08 hm5C_site_56546 DeepMRMD:0;iRNA_m5C:1.21160070865045e-08 56547 chr6 159052925 159052925 1 + C G rs189102191 159052924 + 159052904 159052944 41 AGTCAGATAGTGACTGAGCCCCGGCCAGCCCAGCGAGGCGA AGTCAGATAGTGACTGAGCCCGGGCCAGCCCAGCGAGGCGA < 41bp 0.52925979028692 0.81276150719307 0.290729 0.5867171 prediction 0.567003433812302 Functional Gain - TMEM181 ENSG00000146433 UTR3 Human protein_coding chr6:159052924 chr6:159052925 . . 0 22 hm5C_associated_SNPs_103402 0 0 1 0 1 Ribosome 0.500231643842843 0.500221980100071 0.1734342 0 hm5C_site_56547 DeepMRMD:0.1734342;iRNA_m5C:0 56548 chr11 7060966 7060966 1 + C G rs144648828 7060965 + 7060945 7060985 41 GGTCGGCCCAGACTATAGGACCAGATGATGCCAAGGCTGGA GGTCGGCCCAGACTATAGGACGAGATGATGCCAAGGCTGGA < 41bp 0.538423861040542 0.821923157001558 0.098219484 0.27446216 prediction 0.566998591922032 Functional Gain - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7060965 chr11:7060966 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_103403 0 0 0 0 1 cytosol 0.500231643907623 0.50023164301896 0 0 hm5C_site_56548 DeepMRMD:0;iRNA_m5C:0 56549 chr7 154862701 154862701 1 + C G LUAD 154862700 + 154862680 154862720 41 TCGGCAAAGACGACCTGCGCCCCAGCTCGCCCCTGCTCTCG TCGGCAAAGACGACCTGCGCCGCAGCTCGCCCCTGCTCTCG < 41bp 0.48186273468078 0.783493714714881 0.030524462 0.121509016 prediction 0.566987429429761 Functional Gain - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154862700 chr7:154862701 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_103404 0 0 0 0 0 exosome 0.500231643472683 0.500231643921092 0 8.96817953233153e-10 hm5C_site_56549 DeepMRMD:0;iRNA_m5C:8.96817953233153e-10 56550 chr19 579519 579519 1 + C A rs55713331 579515 + 579495 579535 41 TGCAGCCGGCACAGTCTTCACTACCGTAGAAGACCTTGGCT TGCAGCCGGCACAGTCTTCACTACAGTAGAAGACCTTGGCT < 41bp 0.387895185904734 0.783492762119098 0.21676657 0.87571716 prediction 0.566985524238196 Functional Gain - BSG ENSG00000172270 CDS Human protein_coding chr19:579515 chr19:579519 synonymous SNV . 0 25 hm5C_associated_SNPs_103405 0 0 1 0 1 Ribosome 0.50023164383279 0.500228198689864 0.75143432 0 hm5C_site_56550 DeepMRMD:0.75143432;iRNA_m5C:0 56551 chr21 46066709 46066709 1 + C A HNSC 46066705 + 46066685 46066725 41 TGCTGCAAGACTGTCTGCTGCAAGCCTGTGTGCTGTGTGCC TGCTGCAAGACTGTCTGCTGCAAGACTGTGTGCTGTGTGCC < 41bp 0.598770302597922 0.882262233310299 0.2413109 0.3473234 prediction 0.566983861424754 Functional Gain - KRTAP10-11 ENSG00000243489 CDS Human protein_coding chr21:46066705 chr21:46066709 nonsynonymous SNV 0.023 3 25 hm5C_associated_SNPs_103406 0 0 0 0 0 unknown 0.500232395156978 0.500231754091392 0 0 hm5C_site_56551 DeepMRMD:0;iRNA_m5C:0 56552 chr6 50682990 50682990 1 + C G OV 50682989 + 50682969 50683009 41 CTCCACTAACCACCAGTACACCCCGCTCCACCACCAGTCCT CTCCACTAACCACCAGTACACGCCGCTCCACCACCAGTCCT < 41bp 0.476142381124379 0.783475937601266 0.06849539 0.123688966 prediction 0.566951875202531 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50682989 chr6:50682990 synonymous SNV . 0 22 hm5C_associated_SNPs_103407 0 0 0 1 0 unknown 0.500231643921075 0.500231643921105 0 6.15063555642337e-14 hm5C_site_56552 DeepMRMD:0;iRNA_m5C:6.15063555642337e-14 56553 chr22 24837528 24837528 1 + T A rs200750556 24837524 + 24837504 24837544 41 TTCTGGTTGGCTTGACCAGTCACGTTGGGAGAAGAGAGAGA TTCTGGTTGGCTTGACCAGTCACGATGGGAGAAGAGAGAGA < 41bp 0.512000926953059 0.795455386142721 0.35035527 0.32321107 prediction 0.566908918379324 Functional Gain - SPECC1L-ADORA2A ENSG00000178803 ncRNA_intronic Human antisense chr22:24837524 chr22:24837528 . . 0 25 hm5C_associated_SNPs_103408 0 0 0 1 0 exosome 0.500231519998503 0.500231643825766 0 2.47654525553642e-07 hm5C_site_56553 DeepMRMD:0;iRNA_m5C:2.47654525553642e-07 56554 chr15 81598322 81598322 1 + T G PRAD 81598320 + 81598300 81598340 41 AAGGGCAATGAGGTTCTTTCCATCAACGGCAAGTCTCTCAA AAGGGCAATGAGGTTCTTTCCAGCAACGGCAAGTCTCTCAA < 41bp 0.551179133367825 0.834629349397788 0.2707388 0.44030267 prediction 0.566900432059927 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81598320 chr15:81598322 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103409 0 0 0 0 1 Nucleus 0.500231376395572 0.500231643889065 0 5.34986985600838e-07 hm5C_site_56554 DeepMRMD:0;iRNA_m5C:5.34986985600838e-07 56555 chr20 17446118 17446118 1 + T A LUSC 17446114 + 17446094 17446134 41 TGGCTACGGGGTCCTTGATGCAGGTGCCATGGTGAAAATGG TGGCTACGGGGTCCTTGATGCAGGAGCCATGGTGAAAATGG < 41bp 0.48004181996445 0.783449943065952 0.9110884 0.9093461 prediction 0.566899886131904 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17446114 chr20:17446118 synonymous SNV . 0 25 hm5C_associated_SNPs_103410 0 0 0 0 1 Endoplasmic reticulum 0.500231647470462 0.500231643925517 0 0 hm5C_site_56555 DeepMRMD:0;iRNA_m5C:0 56556 chr9 132636948 132636948 1 + C A UCEC 132636944 + 132636924 132636964 41 TCCTTCCCCCTCGAGGGGCTCGACCTGCGCCCCTTCCTTGC TCCTTCCCCCTCGAGGGGCTCGACATGCGCCCCTTCCTTGC < 41bp 0.374474926710771 0.783445896714216 0.019053161 0.11085078 prediction 0.566891793428433 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132636944 chr9:132636948 nonsynonymous SNV 0.459 1 25 hm5C_associated_SNPs_103411 0 0 1 0 2 chromatin 0.500231643922041 0.500231643920653 0 0 hm5C_site_56556 DeepMRMD:0;iRNA_m5C:0 56557 chr17 40717731 40717731 1 + C G rs201779417 40717730 + 40717710 40717750 41 AGTGAAGCCGCGGCTCAAAGCCGGCTGCAGAGCCAGATGAG AGTGAAGCCGCGGCTCAAAGCGGGCTGCAGAGCCAGATGAG < 41bp 0.531982461226528 0.815422296331512 0.85439676 0.9017 prediction 0.566879670209967 Functional Gain - COASY ENSG00000068120 CDS Human protein_coding chr17:40717730 chr17:40717731 nonsynonymous SNV 0.976 4 22 hm5C_associated_SNPs_103412 0 0 1 0 2 Ribosome 0.500231643975466 0.500231643573861 0.0946064799999999 0 hm5C_site_56557 DeepMRMD:0.0946064799999999;iRNA_m5C:0 56558 chrX 73289233 73289233 1 + T A rs182767628 73289229 + 73289209 73289249 41 CCCTGAGGGCGGAAGACAGCCTGATGACGGTGGTACAATCA CCCTGAGGGCGGAAGACAGCCTGAAGACGGTGGTACAATCA < 41bp 0.484713174045958 0.783431765931923 0.09548989 0.055717945 prediction 0.566863531863846 Functional Gain - JPX ENSG00000225470;ENSG00000230590;ENSG00000234969 ncRNA_exonic Human other chrX:73289229 chrX:73289233 . . 0 25 hm5C_associated_SNPs_103413 0 0 0 0 0 unknown 0.500231643929686 0.500222504882175 0 0 hm5C_site_56558 DeepMRMD:0;iRNA_m5C:0 56559 chr17 39240804 39240804 1 + C A PAAD 39240800 + 39240780 39240820 41 ACCTGCTGCCGCCCCAGCTGCTGCCGCCCCTGCTGCTGCCT ACCTGCTGCCGCCCCAGCTGCTGCAGCCCCTGCTGCTGCCT < 41bp 0.614480814713715 0.897902139823996 0.3792733 0.3486408 prediction 0.566842650220564 Functional Gain - KRTAP4-7 ENSG00000240871 CDS Human protein_coding chr17:39240800 chr17:39240804 nonsynonymous SNV 0.026 0 25 hm5C_associated_SNPs_103414 0 0 0 0 0 unknown 0.500231643921092 0.50023164524999 0 2.65779442898406e-09 hm5C_site_56559 DeepMRMD:0;iRNA_m5C:2.65779442898406e-09 56560 chrX 150912786 150912786 1 + T A LUAD 150912782 + 150912762 150912802 41 ACGTGCAGGAGAAGCTAGGGCAGCTGGAGACCAACATGGAA ACGTGCAGGAGAAGCTAGGGCAGCAGGAGACCAACATGGAA < 41bp 0.548357764345289 0.83177793934178 0.363964 0.5499624 prediction 0.566840349992981 Functional Gain - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150912782 chrX:150912786 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103415 0 0 0 0 0 unknown 0.500231643895911 0.50023163918526 0.0999247999999999 0 hm5C_site_56560 DeepMRMD:0.0999247999999999;iRNA_m5C:0 56561 chr20 20033177 20033177 1 + G C UCEC 20033178 - 20033158 20033198 41 GCCGCAAGGAGGACGCGCAGCCTGGTCACCATGGAAACGGT GCCGCAAGGAGGACGCGCAGCGTGGTCACCATGGAAACGGT < 41bp 0.52611616503384 0.809523850494384 0.027759999 0.23424178 prediction 0.56681537092109 Functional Gain - CRNKL1 ENSG00000101343 CDS Human protein_coding chr20:20033178 chr20:20033177 nonsynonymous SNV 0.062 1 22 hm5C_associated_SNPs_103416 0 0 0 0 0 nucleolus 0.500231643917094 0.500231643377301 0 0 hm5C_site_56561 DeepMRMD:0;iRNA_m5C:0 56562 chr6 168440832 168440832 1 + T A rs184677574 168440828 + 168440808 168440848 41 GCACCCCACCCTGGTGCACGCGGATTCCTCCAGGTCTCACC GCACCCCACCCTGGTGCACGCGGAATCCTCCAGGTCTCACC < 41bp 0.541404520183946 0.824805088279818 0.50677717 0.87652403 prediction 0.566801136191746 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168440828 chr6:168440832 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103417 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.73949372 0 hm5C_site_56562 DeepMRMD:0.73949372;iRNA_m5C:0 56563 chr19 33642110 33642110 1 + T A UCEC 33642106 + 33642086 33642126 41 GATCATCACACAAGGTCCATCACGTCATGCTGCTTTGACCC GATCATCACACAAGGTCCATCACGACATGCTGCTTTGACCC < 41bp 0.554373530968243 0.837770378547696 0.064389974 0.16187742 prediction 0.566793695158906 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33642106 chr19:33642110 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_103418 0 0 0 0 1 exosome 0.500231603471812 0.500231640936301 0 7.49289785773044e-08 hm5C_site_56563 DeepMRMD:0;iRNA_m5C:7.49289785773044e-08 56564 chr15 23811561 23811561 1 + C A HNSC 23811557 + 23811537 23811577 41 CCATTGAGTTTGTTCCAGGGCAGCCCTACCGGGGCCGCTGG CCATTGAGTTTGTTCCAGGGCAGCACTACCGGGGCCGCTGG < 41bp 0.618097916502091 0.901475593345742 0.22548124 0.14781934 prediction 0.566755353687303 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811557 chr15:23811561 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_103419 0 0 1 0 0 chromatin 0.500231643921093 0.500231643921095 0 4.21884749357559e-15 hm5C_site_56564 DeepMRMD:0;iRNA_m5C:4.21884749357559e-15 56565 chr12 104149122 104149122 1 + C A LUAD 104149118 + 104149098 104149138 41 TCAGCAGGCTGGCTGGAGACCGGGCGGGTTGCCTACCCCAC TCAGCAGGCTGGCTGGAGACCGGGAGGGTTGCCTACCCCAC < 41bp 0.590831184612983 0.874196233876803 0.91855097 0.9246011 prediction 0.566730098527641 Functional Gain - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104149118 chr12:104149122 synonymous SNV . 0 25 hm5C_associated_SNPs_103420 0 0 0 0 1 nucleoplasm 0.500231643921092 0.500231643921092 0.01210026 0 hm5C_site_56565 DeepMRMD:0.01210026;iRNA_m5C:0 56566 chrX 79698933 79698933 1 + C A LUAD 79698929 + 79698909 79698949 41 GAAGGAATGACCAAGTATGACTACCTTATGACCTTGCATGG GAAGGAATGACCAAGTATGACTACATTATGACCTTGCATGG < 41bp 0.377944460915038 0.783328426390977 0.18425485 0.68284464 prediction 0.566656852781954 Functional Gain - FAM46D ENSG00000174016 CDS Human protein_coding chrX:79698929 chrX:79698933 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_103421 0 0 0 0 0 unknown 0.500231643921079 0.500231643921094 0.36568928 2.99760216648792e-14 hm5C_site_56566 DeepMRMD:0.36568928;iRNA_m5C:2.99760216648792e-14 56567 chr7 43351380 43351380 1 + T A LUSC 43351376 + 43351356 43351396 41 CCACAGAATCTGTACCAGAACAGGTTTTTAGGCCTGGCCGC CCACAGAATCTGTACCAGAACAGGATTTTAGGCCTGGCCGC < 41bp 0.502826352696844 0.786134282700049 0.25279778 0.638811 prediction 0.566615860006409 Functional Gain - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43351376 chr7:43351380 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103422 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.277622 0 hm5C_site_56567 DeepMRMD:0.277622;iRNA_m5C:0 56568 chr8 104388131 104388131 1 + T A LIHC 104388127 + 104388107 104388147 41 TTTGAGGAGTCCTGGACACCCAACTACAAGCAGTGTTCATG TTTGAGGAGTCCTGGACACCCAACAACAAGCAGTGTTCATG < 41bp 0.549444462471202 0.832746526886584 0.23830304 0.23132297 prediction 0.566604128830763 Functional Gain - CTHRC1 ENSG00000164932 CDS Human protein_coding chr8:104388127 chr8:104388131 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103423 0 0 0 0 1 nucleus 0.500231643923808 0.500231643927201 0 6.78546108190403e-12 hm5C_site_56568 DeepMRMD:0;iRNA_m5C:6.78546108190403e-12 56569 chr2 242128114 242128114 1 + C G rs148609049 242128113 + 242128093 242128133 41 GTGAGGACGGGACTCTACTGCCGAGACCAGGCTCACGCTGA GTGAGGACGGGACTCTACTGCGGAGACCAGGCTCACGCTGA < 41bp 0.496863016732374 0.783293843438493 0.37714323 0.8929224 prediction 0.566587686876985 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242128113 chr2:242128114 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_103424 0 0 0 0 1 chromatin 0.500237574185645 0.500231642301083 0.7858448 0 hm5C_site_56569 DeepMRMD:0.7858448;iRNA_m5C:0 56570 chr8 53852521 53852521 1 + C A LUSC 53852517 + 53852497 53852537 41 GCCCGCCAACGCATCGGGCCCGGACCCGGCGCTGAGCTGCT GCCCGCCAACGCATCGGGCCCGGAACCGGCGCTGAGCTGCT < 41bp 0.579092476599356 0.86238544869768 0.8490923 0.9123537 prediction 0.566585944196648 Functional Gain - NPBWR1 ENSG00000183729 CDS Human protein_coding chr8:53852517 chr8:53852521 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103425 0 0 0 0 0 exosome 0.500231643921094 0.500231643921093 0.1265228 0 hm5C_site_56570 DeepMRMD:0.1265228;iRNA_m5C:0 56571 chr11 44069600 44069600 1 + C G BLCA 44069596 + 44069576 44069616 41 ATACCCGGAGTATGAGTCATCGGTCAGACACCCTTCCTGTG ATACCCGGAGTATGAGTCATCGGTGAGACACCCTTCCTGTG < 41bp 0.497127399021857 0.783287039704524 0.06639236 0.36162838 prediction 0.566574079409047 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44069596 chr11:44069600 stopgain 0.001 0 25 hm5C_associated_SNPs_103426 0 0 0 0 0 Exosome 0.500231643921092 0.500231643921092 0 1.33226762955019e-15 hm5C_site_56571 DeepMRMD:0;iRNA_m5C:1.33226762955019e-15 56572 chr20 31624312 31624312 1 + C G rs113787573 31624311 + 31624291 31624331 41 TCTGATGTCCGCACCAGCCACCACAGCCAGCTACATCCAAC TCTGATGTCCGCACCAGCCACGACAGCCAGCTACATCCAAC < 41bp 0.473327142725622 0.783270568739115 0.08697885 0.087451845 prediction 0.566541137478231 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31624311 chr20:31624312 synonymous SNV . 0 22 hm5C_associated_SNPs_103427 0 0 0 0 1 unknown 0.500641829075634 0.500231707338503 0 0 hm5C_site_56572 DeepMRMD:0;iRNA_m5C:0 56573 chr16 18584369 18584369 1 + T G UCEC 18584367 + 18584347 18584387 41 ACCTCCGGATGTTCCCCACTCTTCAAAGCCAAGATGGTAGC ACCTCCGGATGTTCCCCACTCTGCAAAGCCAAGATGGTAGC < 41bp 0.520778623361484 0.804042148309027 0.77283996 0.7717271 prediction 0.566527049895087 Functional Gain - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18584367 chr16:18584369 . . 0 23 hm5C_associated_SNPs_103428 0 0 1 0 1 unknown 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_56573 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 56574 chr12 113875843 113875843 1 + C A UCEC 113875839 + 113875819 113875859 41 TGTGGAGGCAACAACATCAACAGCCGAGAGCTGCAGGCTTT TGTGGAGGCAACAACATCAACAGCAGAGAGCTGCAGGCTTT < 41bp 0.622608802264095 0.905868351062072 0.260426 0.33745062 prediction 0.566519097595955 Functional Gain - SDSL ENSG00000139410 CDS Human protein_coding chr12:113875839 chr12:113875843 synonymous SNV . 0 25 hm5C_associated_SNPs_103429 0 0 0 0 0 Nucleus 0.500231643921102 0.500231642820858 0 0 hm5C_site_56574 DeepMRMD:0;iRNA_m5C:0 56575 chr19 20959133 20959133 1 + C G rs150438174 20959132 + 20959112 20959152 41 CTCTCCCTGCAGCTGGAGCTCCAGGTCGTCTGTTCACTGCT CTCTCCCTGCAGCTGGAGCTCGAGGTCGTCTGTTCACTGCT < 41bp 0.50515737007157 0.788413158639924 0.79676616 0.95060945 prediction 0.566511577136708 Functional Gain - ZNF626;ZNF85 ENSG00000160229 UTR5 Human protein_coding chr19:20959132 chr19:20959133 . . 0 22 hm5C_associated_SNPs_103430 0 0 0 1 0 unknown 0.500231640942594 0.50023164392257 0.30768658 5.95995319763176e-09 hm5C_site_56575 DeepMRMD:0.30768658;iRNA_m5C:5.95995319763176e-09 56576 chr14 38679188 38679188 1 + C G LGG 38679187 + 38679167 38679207 41 CATCGTGGTCTTCTCTCGCACCGCGGCCAACAGCGACGGCA CATCGTGGTCTTCTCTCGCACGGCGGCCAACAGCGACGGCA < 41bp 0.473151154345254 0.783249967784434 0.112900704 0.67408514 prediction 0.566499935568869 Functional Gain - SSTR1 ENSG00000139874 CDS Human protein_coding chr14:38679187 chr14:38679188 synonymous SNV . 0 22 hm5C_associated_SNPs_103431 0 0 0 0 0 nucleus 0.500231639633931 0.500231643971869 0.34817028 8.67587557351612e-09 hm5C_site_56576 DeepMRMD:0.34817028;iRNA_m5C:8.67587557351612e-09 56577 chr1 220863646 220863646 1 + C A rs550973161 220863642 + 220863622 220863662 41 ACGGCCAGGGGGCGCTGCGGCCCCCCCAATCCCCCGCCCCG ACGGCCAGGGGGCGCTGCGGCCCCACCAATCCCCCGCCCCG < 41bp 0.459537195938725 0.783240959246523 0.2263898 0.13077262 prediction 0.566481918493046 Functional Gain - C1orf115 ENSG00000162817 UTR5 Human protein_coding chr1:220863642 chr1:220863646 . . 0 25 hm5C_associated_SNPs_103432 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56577 DeepMRMD:0;iRNA_m5C:0 56578 chr7 141464431 141464431 1 + T G UCEC 141464429 + 141464409 141464449 41 GAGTTTAAGCTCTATTCTGTCTTTAGGGGAATTGAGGCCAC GAGTTTAAGCTCTATTCTGTCTGTAGGGGAATTGAGGCCAC < 41bp 0.542006571217306 0.825243551335131 0.24095124 0.2433607 prediction 0.56647396023565 Functional Gain - TAS2R3 ENSG00000127362 CDS Human protein_coding chr7:141464429 chr7:141464431 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_103433 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56578 DeepMRMD:0;iRNA_m5C:0 56579 chr15 45927179 45927179 1 + C A rs187335300 45927175 + 45927155 45927195 41 GGACCTTTCCTGGGGGGAGCCTCGCTTTCCCCGCCTCCAGC GGACCTTTCCTGGGGGGAGCCTCGATTTCCCCGCCTCCAGC < 41bp 0.536737501248672 0.819971340509668 0.56872946 0.9590776 prediction 0.566467678521992 Functional Gain - SQOR ENSG00000137767 UTR5 Human protein_coding chr15:45927175 chr15:45927179 . . 0 25 hm5C_associated_SNPs_103434 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.78069628 0 hm5C_site_56579 DeepMRMD:0.78069628;iRNA_m5C:0 56580 chr1 27721073 27721073 1 + C G rs2230880 27721072 + 27721052 27721092 41 CGTGGTGCTTGGAGCCTTTGCCGCCTGCTGGTTGCCCTTCA CGTGGTGCTTGGAGCCTTTGCGGCCTGCTGGTTGCCCTTCA < 41bp 0.531919773304655 0.815142977018001 0.89427996 0.9111678 prediction 0.566446407426692 Functional Gain - GPR3 ENSG00000181773 CDS Human protein_coding chr1:27721072 chr1:27721073 synonymous SNV . 0 22 hm5C_associated_SNPs_103435 0 0 1 0 0 nucleoplasm 0.500231643921092 0.500231643921093 0.03377568 2.22044604925031e-16 hm5C_site_56580 DeepMRMD:0.03377568;iRNA_m5C:2.22044604925031e-16 56581 chr2 95941749 95941749 1 + T G SKCM 95941746 + 95941726 95941766 41 CTCTACCTGCTGCTGGTGCCCACTGCCGGGCTTTGCTTCTG CTCTACCTGCTGCTGGTGCCCACGGCCGGGCTTTGCTTCTG < 41bp 0.618213122989802 0.901420440294305 0.086936325 0.46290585 prediction 0.566414634609006 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95941746 chr2:95941749 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_103436 0 0 0 0 1 Ribosome 0.500231643954879 0.500231643921088 0 0 hm5C_site_56581 DeepMRMD:0;iRNA_m5C:0 56582 chr1 186276508 186276508 1 + T G THCA 186276506 + 186276486 186276526 41 ACCCACCACTCCCAAGGAGCCTTCACCCACCACCACCAAGG ACCCACCACTCCCAAGGAGCCTGCACCCACCACCACCAAGG < 41bp 0.44153546610439 0.783201308636592 0.25905275 0.2739888 prediction 0.566402617273185 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276506 chr1:186276508 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_103437 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643921092 0 0 hm5C_site_56582 DeepMRMD:0;iRNA_m5C:0 56583 chr22 25010819 25010819 1 + C G LUAD 25010818 + 25010798 25010838 41 TGTGTGGGGCTCATGAATGCCCACAGCATGGGCATCGGGGG TGTGTGGGGCTCATGAATGCCGACAGCATGGGCATCGGGGG < 41bp 0.49203885507323 0.783197439535014 0.08137807 0.1720533 prediction 0.566394879070028 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25010818 chr22:25010819 nonsynonymous SNV 0.963 2 22 hm5C_associated_SNPs_103438 0 0 0 0 2 exosome 0.500232802654146 0.500258199972537 0 5.07946367807044e-05 hm5C_site_56583 DeepMRMD:0;iRNA_m5C:5.07946367807044e-05 56584 chr16 3063378 3063378 1 + C A STAD 3063374 + 3063354 3063394 41 GAGGGGCCAGATGGCTTCGACCGGCTTAGAACTGCTGGGCA GAGGGGCCAGATGGCTTCGACCGGATTAGAACTGCTGGGCA < 41bp 0.595851271457777 0.879037591246543 0.3938618 0.6952628 prediction 0.566372639577533 Functional Gain - CLDN9 ENSG00000213937 CDS Human protein_coding chr16:3063374 chr16:3063378 synonymous SNV . 0 25 hm5C_associated_SNPs_103439 0 0 0 0 0 exosome 0.500231643968153 0.500231643921139 0.3905256 0 hm5C_site_56584 DeepMRMD:0.3905256;iRNA_m5C:0 56585 chr8 67109033 67109033 1 + C A rs61742246 67109029 + 67109009 67109049 41 TCACAGCACCCTTTCTCCTCCTAGCCTAGGATCCAGTGCCT TCACAGCACCCTTTCTCCTCCTAGACTAGGATCCAGTGCCT < 41bp 0.437124572191769 0.783164420267629 0.19099513 0.18235078 prediction 0.566328840535257 Functional Gain - LINC00967 ENSG00000253138 ncRNA_exonic Human lincRNA chr8:67109029 chr8:67109033 . . 0 25 hm5C_associated_SNPs_103440 0 0 0 0 1 unknown 0.500231643920664 0.500231643634756 0 0 hm5C_site_56585 DeepMRMD:0;iRNA_m5C:0 56586 chr17 43183420 43183420 1 + C G rs16939858 43183419 + 43183399 43183439 41 TCTTTAATGAAAAGCTGAATCCAGATCATTCCTCAGAATGA TCTTTAATGAAAAGCTGAATCGAGATCATTCCTCAGAATGA < 41bp 0.4953198170987 0.783155557584803 0.39982605 0.8703817 prediction 0.566311115169607 Functional Gain - NMT1 ENSG00000136448 UTR3 Human protein_coding chr17:43183419 chr17:43183420 . . 0 22 hm5C_associated_SNPs_103441 0 0 1 0 0 Ribosome 0.500231643489518 0.500231747662499 0.7407634 2.08345961816292e-07 hm5C_site_56586 DeepMRMD:0.7407634;iRNA_m5C:2.08345961816292e-07 56587 chr1 173837516 173837516 1 + C A rs188282970 173837512 + 173837492 173837532 41 TCACTTCCGGGACGGTGTTCCGGCCCATTCCGGCCCATTTC TCACTTCCGGGACGGTGTTCCGGCACATTCCGGCCCATTTC < 41bp 0.587673311747082 0.870799399321952 0.9006723 0.90243185 prediction 0.566252175149739 Functional Gain - ZBTB37 ENSG00000234741 ncRNA_intronic Human processed_transcript chr1:173837512 chr1:173837516 . . 0 25 hm5C_associated_SNPs_103442 0 0 1 0 1 chromatin 0.500231643921093 0.500231643921093 0.00351910000000011 0 hm5C_site_56587 DeepMRMD:0.00351910000000011;iRNA_m5C:0 56588 chr7 123516961 123516961 1 + T G rs111907036 123516958 + 123516938 123516978 41 GGAACGCGCCCAGTTACCTTCACTTGAACCCTGCAAGTTAC GGAACGCGCCCAGTTACCTTCACGTGAACCCTGCAAGTTAC < 41bp 0.403326480193307 0.783123020132025 0.12023252 0.33608 prediction 0.566246040264049 Functional Gain - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123516958 chr7:123516961 nonsynonymous SNV 0.878 4 24 hm5C_associated_SNPs_103443 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_56588 DeepMRMD:0;iRNA_m5C:0 56589 chr1 161645092 161645092 1 + C A LUAD 161645088 + 161645068 161645108 41 GCAGGGAAATGGGAGAGACCCTCCCTGAGAAACCAGGTGAG GCAGGGAAATGGGAGAGACCCTCCATGAGAAACCAGGTGAG < 41bp 0.638813674289549 0.921916519190675 0.36516297 0.94184947 prediction 0.566205689802252 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161645088 chr1:161645092 nonsynonymous SNV 0.025 3 25 hm5C_associated_SNPs_103444 0 0 1 0 2 Endoplasmic reticulum 0.500231643917456 0.500231643919401 0.88369894 3.89022147828655e-12 hm5C_site_56589 DeepMRMD:0.88369894;iRNA_m5C:3.89022147828655e-12 56590 chr1 28880177 28880177 1 + T G UCEC 28880175 + 28880155 28880195 41 GAACCCTACATGGATGAGAACTTCATCTCCAGAGCCTTTGC GAACCCTACATGGATGAGAACTGCATCTCCAGAGCCTTTGC < 41bp 0.454213026613999 0.783086944199613 0.04215443 0.09182978 prediction 0.566173888399227 Functional Gain - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28880175 chr1:28880177 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103445 0 0 1 0 2 Ribosome 0.500231643723325 0.500231642856966 0 0 hm5C_site_56590 DeepMRMD:0;iRNA_m5C:0 56591 chr11 397119 397119 1 + C G LUAD 397115 + 397095 397135 41 GTCTGAGCAGCTGGAGCCCGCGGCCACCTCCACCTACAGGG GTCTGAGCAGCTGGAGCCCGCGGCGACCTCCACCTACAGGG < 41bp 0.505134957651748 0.788216751788984 0.88442314 0.93062043 prediction 0.566163588274472 Functional Gain - PKP3 ENSG00000184363 CDS Human protein_coding chr11:397115 chr11:397119 synonymous SNV . 0 25 hm5C_associated_SNPs_103446 0 0 1 0 0 Ribosome 0.500231643921092 0.50023164391985 0.0923945800000001 0 hm5C_site_56591 DeepMRMD:0.0923945800000001;iRNA_m5C:0 56592 chr15 25448252 25448252 1 + C A rs56991412 25448248 + 25448228 25448268 41 CCACATCAGTGTCCGTCATCCCGGCGTCCAGCCCCTGGTGT CCACATCAGTGTCCGTCATCCCGGAGTCCAGCCCCTGGTGT < 41bp 0.463249756697583 0.783078866298765 0.9125993 0.9125567 prediction 0.56615773259753 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25448248 chr15:25448252 . . 0 25 hm5C_associated_SNPs_103447 0 0 0 0 2 unknown 0.500234308885812 0.500229423616717 0 0 hm5C_site_56592 DeepMRMD:0;iRNA_m5C:0 56593 chr15 40764103 40764103 1 + C G OV 40764102 + 40764082 40764122 41 CGCAACAAGTTTGGCGAGATCCGAGAGTACCAGCAACGCTA CGCAACAAGTTTGGCGAGATCGGAGAGTACCAGCAACGCTA < 41bp 0.520917204926367 0.803992622264439 0.8965452 0.9096433 prediction 0.566150834676145 Functional Gain - CHST14 ENSG00000169105 CDS Human protein_coding chr15:40764102 chr15:40764103 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_103448 0 0 1 0 0 exosome 0.500231643921093 0.500231643921092 0.0261962 0 hm5C_site_56593 DeepMRMD:0.0261962;iRNA_m5C:0 56594 chr6 36976674 36976674 1 + C A LUAD 36976670 + 36976650 36976690 41 GTGCATCACCGCCCTGAGTGCAGGCCTCCCGAGTCCCCAGG GTGCATCACCGCCCTGAGTGCAGGACTCCCGAGTCCCCAGG < 41bp 0.599199654971328 0.882270988619091 0.2921224 0.36784688 prediction 0.566142667295526 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36976670 chr6:36976674 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103449 0 0 0 0 1 Endoplasmic reticulum 0.500231643106626 0.500231553776892 0 0 hm5C_site_56594 DeepMRMD:0;iRNA_m5C:0 56595 chr2 74043755 74043755 1 + C A UCEC 74043751 + 74043731 74043771 41 CCAGTTCAGCCAACCCTACCCAGCCTACTGTCCCTCAATCT CCAGTTCAGCCAACCCTACCCAGCATACTGTCCCTCAATCT < 41bp 0.388841345496468 0.783055748574789 0.2913611 0.23851836 prediction 0.566111497149577 Functional Gain - C2orf78 ENSG00000187833 CDS Human protein_coding chr2:74043751 chr2:74043755 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_103450 0 0 0 0 0 unknown 0.500231643921081 0.500231643921092 0 2.30926389122033e-14 hm5C_site_56595 DeepMRMD:0;iRNA_m5C:2.30926389122033e-14 56596 chr3 148459293 148459293 1 + C A PRAD 148459289 + 148459269 148459309 41 CATCATCATTTGGCTGCTGGCAGGCTTGGCCAGTTTGCCAG CATCATCATTTGGCTGCTGGCAGGATTGGCCAGTTTGCCAG < 41bp 0.60307071892392 0.886125196235444 0.5921067 0.8271349 prediction 0.566108954623049 Functional Gain - AGTR1 ENSG00000144891 CDS Human protein_coding chr3:148459289 chr3:148459293 synonymous SNV . 0 25 hm5C_associated_SNPs_103451 0 0 0 0 0 Endoplasmic reticulum 0.500231643884866 0.500231643730387 0.4700564 0 hm5C_site_56596 DeepMRMD:0.4700564;iRNA_m5C:0 56597 chr17 21217477 21217477 1 + T A LUAD 21217473 + 21217453 21217493 41 CCCCAGGAGCACCCCTTCTTCACCTTGCACAAAACCAAGAA CCCCAGGAGCACCCCTTCTTCACCATGCACAAAACCAAGAA < 41bp 0.565438000115264 0.848490660060744 0.03849125 0.05785024 prediction 0.566105319890962 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21217473 chr17:21217477 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_103452 0 0 0 0 1 Ribosome 0.5002316439208 0.500231643900026 0 0 hm5C_site_56597 DeepMRMD:0;iRNA_m5C:0 56598 chr10 115439087 115439087 1 + C G rs549850003 115439086 + 115439066 115439106 41 CAGTGGATGCCACAGCGGGCCCGAAGCGGATCAGCCTTGTG CAGTGGATGCCACAGCGGGCCGGAAGCGGATCAGCCTTGTG < 41bp 0.512942886196542 0.795967729109089 0.10926229 0.5740436 prediction 0.566049685825095 Functional Gain - CASP7 ENSG00000165806 UTR5 Human protein_coding chr10:115439086 chr10:115439087 . . 0 22 hm5C_associated_SNPs_103453 0 0 0 0 1 Ribosome 0.500231643921076 0.500231643921094 0.1480872 3.59712259978551e-14 hm5C_site_56598 DeepMRMD:0.1480872;iRNA_m5C:3.59712259978551e-14 56599 chr12 121437355 121437355 1 + C A UCEC 121437351 + 121437331 121437371 41 ACGCCGGCATCTCAGGCCACCACCCTCCACGTCCCCAGCCA ACGCCGGCATCTCAGGCCACCACCATCCACGTCCCCAGCCA < 41bp 0.369106160422856 0.783017107104986 0.013621658 0.03520626 prediction 0.566034214209971 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437351 chr12:121437355 nonsynonymous SNV 0.952 1 25 hm5C_associated_SNPs_103454 0 0 0 0 3 cytosol 0.50023168626997 0.500231643920365 0 0 hm5C_site_56599 DeepMRMD:0;iRNA_m5C:0 56600 chr11 33047436 33047436 1 + T G UCEC 33047433 + 33047413 33047453 41 AGTGGTGAGAGTGTGTCAAGCGCTTATGGACTACAAAGTAT AGTGGTGAGAGTGTGTCAAGCGCGTATGGACTACAAAGTAT < 41bp 0.407959508361273 0.78301704139674 0.040032625 0.06483865 prediction 0.566034082793479 Functional Gain - DEPDC7 ENSG00000121690 CDS Human protein_coding chr11:33047433 chr11:33047436 nonsynonymous SNV 0.878 4 24 hm5C_associated_SNPs_103455 0 0 1 0 0 Cytosol 0.500231187927217 0.500231643921299 0 9.11988162766164e-07 hm5C_site_56600 DeepMRMD:0;iRNA_m5C:9.11988162766164e-07 56601 chr11 14276139 14276139 1 + T G UCEC 14276137 + 14276117 14276157 41 CATTTAATGTCCTTCCTGACCATGATGGGCCCTAGTCCCGA CATTTAATGTCCTTCCTGACCAGGATGGGCCCTAGTCCCGA < 41bp 0.56613153486575 0.849147196085557 0.16825655 0.86530614 prediction 0.566031322439614 Functional Gain - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14276137 chr11:14276139 . 1.000 2 23 hm5C_associated_SNPs_103456 0 0 1 0 1 chromatin 0.500231637225199 0.500231643921092 0.73061228 1.33917852362941e-08 hm5C_site_56601 DeepMRMD:0.73061228;iRNA_m5C:1.33917852362941e-08 56602 chr1 186277294 186277294 1 + T A rs114237256 186277290 + 186277270 186277310 41 ACCAAGGGGCCCACATCCACCACCTCTGACAAGCCTGCTCC ACCAAGGGGCCCACATCCACCACCACTGACAAGCCTGCTCC < 41bp 0.544335007993136 0.827347455525515 0.09514272 0.13102251 prediction 0.566024895064759 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186277290 chr1:186277294 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103457 0 0 0 0 0 nucleoplasm 0.50023164396988 0.50023164392122 0 0 hm5C_site_56602 DeepMRMD:0;iRNA_m5C:0 56603 chr1 21889632 21889632 1 + C A STAD 21889628 + 21889608 21889648 41 CAACACCAATGCCCAGGTCCCTGACAGTGCCGGCACCGCCA CAACACCAATGCCCAGGTCCCTGAAAGTGCCGGCACCGCCA < 41bp 0.372211216291537 0.782985511380023 0.13528982 0.25266886 prediction 0.565971022760046 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21889628 chr1:21889632 nonsynonymous SNV 0.947 4 25 hm5C_associated_SNPs_103458 0 0 0 0 1 Endoplasmic reticulum 0.500231643526597 0.500231665286421 0 4.35196483294931e-08 hm5C_site_56603 DeepMRMD:0;iRNA_m5C:4.35196483294931e-08 56604 chr9 131898801 131898801 1 + C A rs17508881 131898797 + 131898777 131898817 41 GAAAACATACAGGATGGAGCCAGCCGGCAGCCAGGGAGTGT GAAAACATACAGGATGGAGCCAGCAGGCAGCCAGGGAGTGT < 41bp 0.388235852504538 0.782984488074702 0.23931918 0.2557401 prediction 0.565968976149405 Functional Gain - PTPA ENSG00000119383 CDS Human protein_coding chr9:131898797 chr9:131898801 synonymous SNV . 0 25 hm5C_associated_SNPs_103459 0 0 1 0 2 Nucleus 0.500231645892755 0.500231643356409 0 0 hm5C_site_56604 DeepMRMD:0;iRNA_m5C:0 56605 chr2 179444876 179444876 1 + T G UCEC 179444873 + 179444853 179444893 41 TATGATGGGGCTTCCGCCATCAATAATGGGAGGCTCCCAGG TATGATGGGGCTTCCGCCATCAAGAATGGGAGGCTCCCAGG < 41bp 0.432155452935803 0.782972781915285 0.16694707 0.42711028 prediction 0.56594556383057 Functional Gain - TTN ENSG00000155657 CDS Human protein_coding chr2:179444873 chr2:179444876 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_103460 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_56605 DeepMRMD:0;iRNA_m5C:0 56606 chr16 3406188 3406188 1 + T A UCEC 3406184 + 3406164 3406204 41 CTAGTTCAGTCCCCCAAATGCTGATCAATTTATGGGGACCA CTAGTTCAGTCCCCCAAATGCTGAACAATTTATGGGGACCA < 41bp 0.476561500520201 0.782965659320912 0.49355596 0.326912 prediction 0.565931318641824 Functional Gain - OR2C1 ENSG00000168158 CDS Human protein_coding chr16:3406184 chr16:3406188 nonsynonymous SNV 0.872 1 25 hm5C_associated_SNPs_103461 0 0 0 0 0 unknown 0.500231643921092 0.500231643921091 0 0 hm5C_site_56606 DeepMRMD:0;iRNA_m5C:0 56607 chr15 40558120 40558120 1 + C A OV 40558116 + 40558096 40558136 41 CAACGACATCCAGAAGTTGTCAGTCATCAGCTCCAACACCC CAACGACATCCAGAAGTTGTCAGTAATCAGCTCCAACACCC < 41bp 0.38668887640295 0.782957093647622 0.28794855 0.21956146 prediction 0.565914187295244 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40558116 chr15:40558120 synonymous SNV . 0 25 hm5C_associated_SNPs_103462 0 0 0 0 1 unknown 0.500266050820757 0.500231285740466 0 0 hm5C_site_56607 DeepMRMD:0;iRNA_m5C:0 56608 chr1 171765655 171765655 1 + T G LAML 171765653 + 171765633 171765673 41 CTCAACCTTGTGTGCCGAGACTTGGGGCTAAAAGACTCAGT CTCAACCTTGTGTGCCGAGACTGGGGGCTAAAAGACTCAGT < 41bp 0.463287820969455 0.782948327625538 0.25642538 0.56031835 prediction 0.565896655251076 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171765653 chr1:171765655 nonsynonymous SNV 0.719 1 23 hm5C_associated_SNPs_103463 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921093 0.1206367 2.22044604925031e-16 hm5C_site_56608 DeepMRMD:0.1206367;iRNA_m5C:2.22044604925031e-16 56609 chr19 5119802 5119802 1 + C G rs544905618 5119801 + 5119781 5119821 41 GGCTGGGCCGGAGGTTGACCCCGAGGAGGAGGAGGAGGAGC GGCTGGGCCGGAGGTTGACCCGGAGGAGGAGGAGGAGGAGC < 41bp 0.537306316071593 0.820253520229505 0.31162977 0.886583 prediction 0.565894408315824 Functional Gain - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5119801 chr19:5119802 synonymous SNV . 0 22 hm5C_associated_SNPs_103464 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.773166 0 hm5C_site_56609 DeepMRMD:0.773166;iRNA_m5C:0 56610 chr19 3736275 3736275 1 + C G SKCM 3736274 + 3736254 3736294 41 TCCGGGGTGCAGGCGGGCAGCCCGGCCGACGGGCAGGGCAT TCCGGGGTGCAGGCGGGCAGCGCGGCCGACGGGCAGGGCAT < 41bp 0.528035808222609 0.810980568064772 0.8297372 0.88038266 prediction 0.565889519684326 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3736274 chr19:3736275 nonsynonymous SNV 0.907 2 22 hm5C_associated_SNPs_103465 0 0 1 0 1 Ribosome 0.500231643921083 0.500231643921092 0.10129092 1.79856129989275e-14 hm5C_site_56610 DeepMRMD:0.10129092;iRNA_m5C:1.79856129989275e-14 56611 chr17 38244645 38244645 1 + C A PRAD 38244641 + 38244621 38244661 41 CGGGAGCAGCTCAAGAATGGCGGCCTGGGCGTAGTCTCCGA CGGGAGCAGCTCAAGAATGGCGGCATGGGCGTAGTCTCCGA < 41bp 0.629784470038075 0.912717510290349 0.31527233 0.4326596 prediction 0.565866080504547 Functional Gain - THRA ENSG00000126351 CDS Human protein_coding chr17:38244641 chr17:38244645 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_103466 0 0 0 0 0 Ribosome 0.500231643921093 0.500231643921093 0 2.22044604925031e-16 hm5C_site_56611 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 56612 chrX 55651049 55651049 1 + C A LUAD 55651045 + 55651025 55651065 41 GAATCCAAGAGTGCATGAGTCAGCCAGAGTTGTTGACCTCT GAATCCAAGAGTGCATGAGTCAGCAAGAGTTGTTGACCTCT < 41bp 0.389092147291142 0.782921268825961 0.22136724 0.26620322 prediction 0.565842537651922 Functional Gain - FOXR2 ENSG00000189299 CDS Human protein_coding chrX:55651045 chrX:55651049 nonsynonymous SNV 0.765 4 25 hm5C_associated_SNPs_103467 0 0 0 0 0 unknown 0.500231639513052 0.500236301477941 0 9.32392977825991e-06 hm5C_site_56612 DeepMRMD:0;iRNA_m5C:9.32392977825991e-06 56613 chr19 9362636 9362636 1 + T G MESO 9362634 + 9362614 9362654 41 GTCACCCCCATGCTGAACCCCTTCATCTACAGCCTGAGGAA GTCACCCCCATGCTGAACCCCTGCATCTACAGCCTGAGGAA < 41bp 0.552992853918877 0.835902559128329 0.04656309 0.23537719 prediction 0.565819410418904 Functional Gain - OR7E24 ENSG00000237521 CDS Human protein_coding chr19:9362634 chr19:9362636 nonsynonymous SNV 0.884 3 23 hm5C_associated_SNPs_103468 0 0 0 0 0 unknown 0.500231643928624 0.500231784022977 0 2.80188706014428e-07 hm5C_site_56613 DeepMRMD:0;iRNA_m5C:2.80188706014428e-07 56614 chr15 100246981 100246981 1 + C G rs3730283 100246980 + 100246960 100247000 41 AGCCACTCAACCTCTTGCTACCCCAGTCGTGTCTGTGACAA AGCCACTCAACCTCTTGCTACGCCAGTCGTGTCTGTGACAA < 41bp 0.485631507962102 0.782907405791117 0.013029933 0.035731226 prediction 0.565814811582234 Functional Gain - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100246980 chr15:100246981 synonymous SNV . 0 22 hm5C_associated_SNPs_103469 0 0 1 0 2 Endoplasmic reticulum 0.500231643921097 0.500231644255915 0 6.69636124328576e-10 hm5C_site_56614 DeepMRMD:0;iRNA_m5C:6.69636124328576e-10 56615 chr11 123894559 123894559 1 + C A rs562948945 123894555 + 123894535 123894575 41 CATTTTCTACACTGTGCTGACACCCCTTCTCAACCCTGTTG CATTTTCTACACTGTGCTGACACCACTTCTCAACCCTGTTG < 41bp 0.392985376510097 0.782898632731803 0.006204337 0.019104987 prediction 0.565797265463607 Functional Gain - OR10G9 ENSG00000236981 CDS Human protein_coding chr11:123894555 chr11:123894559 synonymous SNV . 0 25 hm5C_associated_SNPs_103470 0 0 0 0 0 unknown 0.500231643921052 0.500231357727978 0 0 hm5C_site_56615 DeepMRMD:0;iRNA_m5C:0 56616 chr7 30825451 30825451 1 + C G rs111491161 30825450 + 30825430 30825470 41 GTAAGCCCATGCAGACGGTCCCGGGTGAAACTCCTGTGTTG GTAAGCCCATGCAGACGGTCCGGGGTGAAACTCCTGTGTTG < 41bp 0.539784422465742 0.822680903852356 0.89875966 0.9032693 prediction 0.565792962773227 Functional Gain - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30825450 chr7:30825451 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_103471 0 0 0 0 1 unknown 0.500231643858615 0.500231643908686 0.00901928000000018 1.0014034046435e-10 hm5C_site_56616 DeepMRMD:0.00901928000000018;iRNA_m5C:1.0014034046435e-10 56617 chr16 816775 816775 1 + C G KIRC 816774 + 816754 816794 41 GTACCTGTGCTCCCTCAGCCCCGAGGAGCTGAGCTCCGTGC GTACCTGTGCTCCCTCAGCCCGGAGGAGCTGAGCTCCGTGC < 41bp 0.537021290737563 0.819900327884041 0.12100977 0.7196326 prediction 0.565758074292957 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:816774 chr16:816775 synonymous SNV . 0 22 hm5C_associated_SNPs_103472 0 0 0 0 1 nucleus 0.500231643308262 0.50023164391744 0.4392652 1.21835563859918e-09 hm5C_site_56617 DeepMRMD:0.4392652;iRNA_m5C:1.21835563859918e-09 56618 chr2 223423340 223423340 1 + C A COAD 223423336 + 223423316 223423356 41 TATCCAAGCCCGCTGAATCTCTCCCTGTTATTCAGAACATC TATCCAAGCCCGCTGAATCTCTCCATGTTATTCAGAACATC < 41bp 0.355458659185796 0.782877946153545 0.4230508 0.96923864 prediction 0.56575589230709 Functional Gain - SGPP2 ENSG00000163082 CDS Human protein_coding chr2:223423336 chr2:223423340 nonsynonymous SNV 0.962 3 25 hm5C_associated_SNPs_103473 0 0 0 0 0 Ribosome 0.500231643921092 0.500231647962767 0.93847728 8.08334887913986e-09 hm5C_site_56618 DeepMRMD:0.93847728;iRNA_m5C:8.08334887913986e-09 56619 chr2 219746963 219746963 1 + C G COAD 219746962 + 219746942 219746982 41 ACACAGTGTGCCTAACATTGCCAGGCCTGAGCCGGCGGCAG ACACAGTGTGCCTAACATTGCGAGGCCTGAGCCGGCGGCAG < 41bp 0.537085176832755 0.819958556702088 0.85274607 0.9004521 prediction 0.565746759738665 Functional Gain - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219746962 chr2:219746963 nonsynonymous SNV 0.990 2 22 hm5C_associated_SNPs_103474 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.0954120599999999 0 hm5C_site_56619 DeepMRMD:0.0954120599999999;iRNA_m5C:0 56620 chr16 58537789 58537789 1 + C A SKCM 58537785 + 58537765 58537805 41 AACCGCCCAGCCATCCTCACCTACCATGATGTGGGCCTCAA AACCGCCCAGCCATCCTCACCTACAATGATGTGGGCCTCAA < 41bp 0.359380097468113 0.782866958646413 0.050350904 0.9124166 prediction 0.565733917292826 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58537785 chr16:58537789 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_103475 0 0 0 0 3 Exosome 0.500231643921092 0.500231643921092 0.8248332 0 hm5C_site_56620 DeepMRMD:0.8248332;iRNA_m5C:0 56621 chr19 48342786 48342786 1 + C G LUAD 48342782 + 48342762 48342802 41 GCCCGGCCCCTCAGGCTCCCCAACCACGGCAGTGGCCACTG GCCCGGCCCCTCAGGCTCCCCAACGACGGCAGTGGCCACTG < 41bp 0.490472575291864 0.78283729967625 0.093627244 0.14022115 prediction 0.5656745993525 Functional Gain - CRX ENSG00000105392 CDS Human protein_coding chr19:48342782 chr19:48342786 synonymous SNV . 0 25 hm5C_associated_SNPs_103476 0 0 0 0 0 Nucleus 0.500231643917305 0.500231643921276 0 7.94009302751419e-12 hm5C_site_56621 DeepMRMD:0;iRNA_m5C:7.94009302751419e-12 56622 chr18 72999498 72999498 1 + C G LUSC 72999497 + 72999477 72999517 41 GGGACCGCTGGACGTTCACACCCCAAATGGCACAGAGCCTC GGGACCGCTGGACGTTCACACGCCAAATGGCACAGAGCCTC < 41bp 0.480820837891341 0.782836535662464 0.10319722 0.34693402 prediction 0.565673071324928 Functional Gain - TSHZ1 ENSG00000179981 CDS Human protein_coding chr18:72999497 chr18:72999498 synonymous SNV . 0 22 hm5C_associated_SNPs_103477 0 0 0 0 0 Cytosol 0.500231643921118 0.500231643913684 0 0 hm5C_site_56622 DeepMRMD:0;iRNA_m5C:0 56623 chr10 95931086 95931086 1 + C G HNSC 95931085 + 95931065 95931105 41 GAGCAAGAGCAGACTATTTACCGCAGGGTCTTGCCAGTCGA GAGCAAGAGCAGACTATTTACGGCAGGGTCTTGCCAGTCGA < 41bp 0.51927401957023 0.802109647992167 0.52973026 0.4709918 prediction 0.565671256843873 Functional Gain - PLCE1 ENSG00000138193 CDS Human protein_coding chr10:95931085 chr10:95931086 nonsynonymous SNV 0.960 2 22 hm5C_associated_SNPs_103478 0 0 0 0 0 nucleoplasm 0.500231220779867 0.500231643921077 0 8.46282419253441e-07 hm5C_site_56623 DeepMRMD:0;iRNA_m5C:8.46282419253441e-07 56624 chr11 10472521 10472521 1 + C A rs555347075 10472517 + 10472497 10472537 41 GCAGCCCCGCTCCGCTCTGCCCAGCGCGTCCCCTTTGCTCC GCAGCCCCGCTCCGCTCTGCCCAGAGCGTCCCCTTTGCTCC < 41bp 0.461500970628649 0.782832133656666 0.046764463 0.0790219 prediction 0.565664267313333 Functional Gain - AMPD3 ENSG00000133805 UTR5 Human protein_coding chr11:10472517 chr11:10472521 . . 0 25 hm5C_associated_SNPs_103479 0 0 0 0 1 Cytosol 0.500231643925126 0.500231643921189 0 0 hm5C_site_56624 DeepMRMD:0;iRNA_m5C:0 56625 chr19 32903610 32903610 1 + C A rs368349394 32903606 + 32903586 32903626 41 AGCACTTTGGGAGGTCGAGGCGGGCAGATCACTTGAAGTCA AGCACTTTGGGAGGTCGAGGCGGGAAGATCACTTGAAGTCA < 41bp 0.448273206503926 0.782830075721536 0.9110195 0.91326094 prediction 0.565660151443071 Functional Gain - DPY19L3 ENSG00000178904 UTR3 Human protein_coding chr19:32903606 chr19:32903610 . . 0 25 hm5C_associated_SNPs_103480 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0.00448288000000008 0 hm5C_site_56625 DeepMRMD:0.00448288000000008;iRNA_m5C:0 56626 chr12 108169032 108169032 1 + C A LUSC 108169028 + 108169008 108169048 41 AAACCGGCGGAACGGCTGGCCTTGCCATACTCGCTGCGCAC AAACCGGCGGAACGGCTGGCCTTGACATACTCGCTGCGCAC < 41bp 0.403865072230986 0.782828970558653 0.60630256 0.36833107 prediction 0.565657941117306 Functional Gain - ASCL4 ENSG00000187855 CDS Human protein_coding chr12:108169028 chr12:108169032 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_103481 0 0 0 0 0 exosome 0.500231657990047 0.500231656609198 0 0 hm5C_site_56626 DeepMRMD:0;iRNA_m5C:0 56627 chr11 113660650 113660650 1 + T G UCEC 113660647 + 113660627 113660667 41 TGGAGGCGCAGCTGTACTACCACTGGCAGGCCTTGCAGATC TGGAGGCGCAGCTGTACTACCACGGGCAGGCCTTGCAGATC < 41bp 0.436202661414942 0.78282410505968 0.2584467 0.8617 prediction 0.565648210119359 Functional Gain - CLDN25;USP28 ENSG00000255870;ENSG00000256167 ncRNA_exonic Human other chr11:113660647 chr11:113660650 . . 0 24 hm5C_associated_SNPs_103482 0 0 0 0 0 unknown 0.500231607895093 0.500231656125854 0.7234 9.64615225473864e-08 hm5C_site_56627 DeepMRMD:0.7234;iRNA_m5C:9.64615225473864e-08 56628 chr19 39909596 39909596 1 + C A UCEC 39909592 + 39909572 39909612 41 GAGAAGAGGCTGTGGATTCACTGTCTCCAGCGCCTCTTCTT GAGAAGAGGCTGTGGATTCACTGTATCCAGCGCCTCTTCTT < 41bp 0.366890173081597 0.782823082853905 0.05931306 0.09358704 prediction 0.56564616570781 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39909592 chr19:39909596 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_103483 0 0 0 0 2 Nucleus 0.500232536070382 0.500231643992298 0 0 hm5C_site_56628 DeepMRMD:0;iRNA_m5C:0 56629 chr5 140869424 140869424 1 + C G HNSC 140869420 + 140869400 140869440 41 AGCAGCTGGATCGTGAAGCCCAGGCAAGACATCAGCTGGTG AGCAGCTGGATCGTGAAGCCCAGGGAAGACATCAGCTGGTG < 41bp 0.49296065925638 0.782821801395264 0.54486597 0.86995745 prediction 0.565643602790528 Functional Gain - PCDHGC5 ENSG00000240764 CDS Human protein_coding chr5:140869420 chr5:140869424 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_103484 0 0 0 0 0 exosome 0.500231643801758 0.500231643922557 0.65018296 2.41598963057754e-10 hm5C_site_56629 DeepMRMD:0.65018296;iRNA_m5C:2.41598963057754e-10 56630 chr7 143807278 143807278 1 + C A UCEC 143807274 + 143807254 143807294 41 TAACCAAGTGGTCATATTTGCTACCTGTGTGTTTGTCTTAG TAACCAAGTGGTCATATTTGCTACATGTGTGTTTGTCTTAG < 41bp 0.391260339330867 0.782819686999805 0.2579769 0.8916083 prediction 0.56563937399961 Functional Gain - OR2A2 ENSG00000221989 CDS Human protein_coding chr7:143807274 chr7:143807278 synonymous SNV . 0 25 hm5C_associated_SNPs_103485 0 0 0 0 0 unknown 0.500231642410399 0.500215040073011 0.7832166 0 hm5C_site_56630 DeepMRMD:0.7832166;iRNA_m5C:0 56631 chr16 69496677 69496677 1 + T G rs546818684 69496675 + 69496655 69496695 41 TTCCTCTCTTCACTGGTTTCCATGAGTACCCTTATATTTCA TTCCTCTCTTCACTGGTTTCCAGGAGTACCCTTATATTTCA < 41bp 0.554687563448935 0.83750694389383 0.10287583 0.4439775 prediction 0.565638760889789 Functional Gain - CYB5B ENSG00000103018 UTR3 Human protein_coding chr16:69496675 chr16:69496677 . . 0 23 hm5C_associated_SNPs_103486 0 0 1 0 0 Ribosome 0.500231652804977 0.500231575854008 0 0 hm5C_site_56631 DeepMRMD:0;iRNA_m5C:0 56632 chr20 24646033 24646033 1 + C A rs146301956 24646029 + 24646009 24646049 41 TTGCACCAGGCCAGCACCAGCTCCCGGCGGGCCCTATTCCT TTGCACCAGGCCAGCACCAGCTCCAGGCGGGCCCTATTCCT < 41bp 0.37059954761335 0.782809296542629 0.16687343 0.8790499 prediction 0.565618593085258 Functional Gain - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24646029 chr20:24646033 synonymous SNV . 0 25 hm5C_associated_SNPs_103487 0 0 0 0 1 exosome 0.500231643921092 0.500231644127227 0.7580998 4.12269773875096e-10 hm5C_site_56632 DeepMRMD:0.7580998;iRNA_m5C:4.12269773875096e-10 56633 chrX 151869630 151869630 1 + C A OV 151869626 + 151869606 151869646 41 CTGACCTGGAGTCTGAGTTCCAAGCAGCACTCAGTAGGAAG CTGACCTGGAGTCTGAGTTCCAAGAAGCACTCAGTAGGAAG < 41bp 0.398241842464403 0.782802808767775 0.2512118 0.3048094 prediction 0.565605617535549 Functional Gain - MAGEA6 ENSG00000197172 CDS Human protein_coding chrX:151869626 chrX:151869630 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_103488 0 0 1 0 0 Ribosome 0.500251351195508 0.500230993238404 0 0 hm5C_site_56633 DeepMRMD:0;iRNA_m5C:0 56634 chr1 167097215 167097215 1 + T A LUSC 167097211 + 167097191 167097231 41 CCTCAGGACGGAGGAAAAACCTCCTTTCCAAAGTGACTGGT CCTCAGGACGGAGGAAAAACCTCCATTCCAAAGTGACTGGT < 41bp 0.568881186116288 0.851657624128827 0.2036843 0.9513756 prediction 0.565552876025077 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167097211 chr1:167097215 synonymous SNV . 0 25 hm5C_associated_SNPs_103489 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921036 0.9027512 0 hm5C_site_56634 DeepMRMD:0.9027512;iRNA_m5C:0 56635 chr1 248551384 248551384 1 + C G LUSC 248551383 + 248551363 248551403 41 GGGGCTTTGGACAGTTTTCTCCTCACCCCCATTACCATGAG GGGGCTTTGGACAGTTTTCTCGTCACCCCCATTACCATGAG < 41bp 0.516678418915754 0.799451146697089 0.049678862 0.05504009 prediction 0.565545455562669 Functional Gain - OR2T6 ENSG00000198104 CDS Human protein_coding chr1:248551383 chr1:248551384 nonsynonymous SNV 0.927 0 22 hm5C_associated_SNPs_103490 0 0 0 0 0 unknown 0.500231643921091 0.500231643921092 0 2.22044604925031e-15 hm5C_site_56635 DeepMRMD:0;iRNA_m5C:2.22044604925031e-15 56636 chr3 44938252 44938252 1 + C A UCEC 44938248 + 44938228 44938268 41 ATTTCCCTGCTGACTGAGAGCTCCCTCAAGCCCACAGATAG ATTTCCCTGCTGACTGAGAGCTCCATCAAGCCCACAGATAG < 41bp 0.35180992134237 0.782755639829131 0.03345707 0.804411 prediction 0.565511279658263 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44938248 chr3:44938252 nonsynonymous SNV 0.005 2 25 hm5C_associated_SNPs_103491 0 0 0 0 2 exosome 0.500213946695776 0.500231643921092 0.608822 3.53944506321646e-05 hm5C_site_56636 DeepMRMD:0.608822;iRNA_m5C:3.53944506321646e-05 56637 chr1 120056692 120056692 1 + T G UCEC 120056689 + 120056669 120056709 41 AAAAACGGCGGCACCCTGTACACTTGTGCCTTACGACCCAT AAAAACGGCGGCACCCTGTACACGTGTGCCTTACGACCCAT < 41bp 0.393156008175828 0.782751516369979 0.07221839 0.2409639 prediction 0.565503032739959 Functional Gain - HSD3B1 ENSG00000203857 CDS Human protein_coding chr1:120056689 chr1:120056692 synonymous SNV . 0 24 hm5C_associated_SNPs_103492 0 0 0 0 0 exosome 0.500231643921075 0.500231643662483 0 0 hm5C_site_56637 DeepMRMD:0;iRNA_m5C:0 56638 chr11 60637144 60637144 1 + C A LIHC 60637140 + 60637120 60637160 41 TCTGGACTCCCAGCTGGCACCACCCGCCATGTTCTCTGTCT TCTGGACTCCCAGCTGGCACCACCAGCCATGTTCTCTGTCT < 41bp 0.368552749111173 0.782748405447628 0.05023831 0.16158858 prediction 0.565496810895255 Functional Gain - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60637140 chr11:60637144 synonymous SNV . 0 25 hm5C_associated_SNPs_103493 0 0 0 0 0 exosome 0.500230311202477 0.500207559480074 0 0 hm5C_site_56638 DeepMRMD:0;iRNA_m5C:0 56639 chr2 3652013 3652013 1 + C A LUSC 3652009 + 3651989 3652029 41 TGCCATCTGGACATCCTCAGCCGGCTGGCGATGACGCCTGC TGCCATCTGGACATCCTCAGCCGGATGGCGATGACGCCTGC < 41bp 0.561660471816779 0.844401711450424 0.64191484 0.7068003 prediction 0.565482479267289 Functional Gain - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3652009 chr2:3652013 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_103494 0 0 0 0 1 membrane 0.50023164003756 0.500231643923562 0.12977092 7.77200415136292e-09 hm5C_site_56639 DeepMRMD:0.12977092;iRNA_m5C:7.77200415136292e-09 56640 chr12 18891312 18891312 1 + T A CESC 18891308 + 18891288 18891328 41 ATGCCTTTGATGATCTCTGTCTGCTTATCCGTGATGAAAAA ATGCCTTTGATGATCTCTGTCTGCATATCCGTGATGAAAAA < 41bp 0.548528052946456 0.831243143207285 0.058565408 0.8092584 prediction 0.565430180521656 Functional Gain - CAPZA3 ENSG00000177938 CDS Human protein_coding chr12:18891308 chr12:18891312 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103495 0 0 0 0 0 unknown 0.500231644960575 0.50023175311083 0.6185168 2.16300509947587e-07 hm5C_site_56640 DeepMRMD:0.6185168;iRNA_m5C:2.16300509947587e-07 56641 chr4 175896836 175896836 1 + T A HNSC 175896832 + 175896812 175896852 41 ATGACACCTCCAGGCTGGCTCTCCTATATCCTGCCCTTTGG ATGACACCTCCAGGCTGGCTCTCCAATATCCTGCCCTTTGG < 41bp 0.547817690407491 0.830527726080641 0.087928295 0.97389543 prediction 0.565420071346301 Functional Gain - ADAM29 ENSG00000168594 CDS Human protein_coding chr4:175896832 chr4:175896836 nonsynonymous SNV 0.042 3 25 hm5C_associated_SNPs_103496 0 0 0 0 0 exosome 0.500231643920961 0.500231643920705 0.94779086 0 hm5C_site_56641 DeepMRMD:0.94779086;iRNA_m5C:0 56642 chr1 62902820 62902820 1 + C A rs375113601 62902816 + 62902796 62902836 41 TGCTTGTTGCGCTCCTGGCTCTCCCGGGGCGGGCGCAGATG TGCTTGTTGCGCTCCTGGCTCTCCAGGGGCGGGCGCAGATG < 41bp 0.462549555669492 0.782700972905623 0.32138032 0.95387995 prediction 0.565401945811246 Functional Gain - USP1 ENSG00000162607 UTR5 Human protein_coding chr1:62902816 chr1:62902820 . . 0 25 hm5C_associated_SNPs_103497 0 0 1 0 0 Ribosome 0.500231643921095 0.500231643921094 0.9077599 0 hm5C_site_56642 DeepMRMD:0.9077599;iRNA_m5C:0 56643 chr1 152785001 152785001 1 + C G LIHC 152785000 + 152784980 152785020 41 TGCCCTCCCAAGTGCCTCACCCCTAGATGCCCCCCAAAGTG TGCCCTCCCAAGTGCCTCACCGCTAGATGCCCCCCAAAGTG < 41bp 0.54073234665496 0.82343126695543 0.05355084 0.13611764 prediction 0.565397840600941 Functional Gain - LCE1B ENSG00000196734 CDS Human protein_coding chr1:152785000 chr1:152785001 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_103498 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_56643 DeepMRMD:0;iRNA_m5C:0 56644 chr21 41137628 41137628 1 + C G BLCA 41137627 + 41137607 41137647 41 GCCCATGGAGCCCATCATCACCAATGACCGCTTCACCTCTC GCCCATGGAGCCCATCATCACGAATGACCGCTTCACCTCTC < 41bp 0.469684587832134 0.782693504270273 0.09423521 0.48652637 prediction 0.565387008540546 Functional Gain - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41137627 chr21:41137628 synonymous SNV . 0 22 hm5C_associated_SNPs_103499 0 0 0 0 0 exosome 0.500231643770634 0.497924038722687 0 0 hm5C_site_56644 DeepMRMD:0;iRNA_m5C:0 56645 chrX 48340805 48340805 1 + C A LUAD 48340801 + 48340781 48340821 41 TGTTCCTAAGACCCAGATTTCAACCAGCTGGATGGTCCCAC TGTTCCTAAGACCCAGATTTCAACAAGCTGGATGGTCCCAC < 41bp 0.368473990439499 0.782690248275393 0.082838595 0.22481576 prediction 0.565380496550785 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340801 chrX:48340805 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_103500 0 0 1 0 3 Ribosome 0.500231643917566 0.500231643921092 0 7.05369096465347e-12 hm5C_site_56645 DeepMRMD:0;iRNA_m5C:7.05369096465347e-12 56646 chr16 27454345 27454345 1 + C A rs146177564 27454341 + 27454321 27454361 41 TCAGGACAGTATAATATCTCCTGGCGCTCAGATTACGAAGA TCAGGACAGTATAATATCTCCTGGAGCTCAGATTACGAAGA < 41bp 0.364538200533874 0.782690053934173 0.046343982 0.10474908 prediction 0.565380107868345 Functional Gain - IL21R ENSG00000103522 CDS Human protein_coding chr16:27454341 chr16:27454345 nonsynonymous SNV 0.017 1 25 hm5C_associated_SNPs_103501 0 0 0 0 2 nucleus 0.50023139273865 0.500231643797037 0 5.02116774603323e-07 hm5C_site_56646 DeepMRMD:0;iRNA_m5C:5.02116774603323e-07 56647 chr20 19955917 19955917 1 + T G UCEC 19955914 + 19955894 19955934 41 ACAAGGGCCCCGCCGCCCAGCTCTGAATCACGGCCCCCGTG ACAAGGGCCCCGCCGCCCAGCTCGGAATCACGGCCCCCGTG < 41bp 0.61180825010364 0.894476032332917 0.03822592 0.03358382 prediction 0.565335564458553 Functional Gain - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19955914 chr20:19955917 synonymous SNV . 0 24 hm5C_associated_SNPs_103502 0 0 0 0 0 Nucleus 0.50023164389379 0.500231643904196 0 2.08122408196232e-11 hm5C_site_56647 DeepMRMD:0;iRNA_m5C:2.08122408196232e-11 56648 chr16 1816059 1816059 1 + C A UCEC 1816055 + 1816035 1816075 41 GATGGCGTGCTGGCCGGTATCACCCTGGTGGGCTGTGCCAC GATGGCGTGCTGGCCGGTATCACCATGGTGGGCTGTGCCAC < 41bp 0.633666876630319 0.916328800461084 0.7938212 0.89579314 prediction 0.56532384766153 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1816055 chr16:1816059 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103503 0 0 1 0 1 chromatin 0.500213209899456 0.500007875136851 0.20394388 0 hm5C_site_56648 DeepMRMD:0.20394388;iRNA_m5C:0 56649 chr2 105472172 105472172 1 + C A STAD 105472168 + 105472148 105472188 41 GGGCGCCTACCGGGGGGACCCGTCCTCTGTCAAGATGGTCC GGGCGCCTACCGGGGGGACCCGTCATCTGTCAAGATGGTCC < 41bp 0.416527265466175 0.782659946548767 0.4859606 0.5410465 prediction 0.565319893097535 Functional Gain - POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472168 chr2:105472172 synonymous SNV . 0 25 hm5C_associated_SNPs_103504 0 0 0 0 0 exosome 0.50023164390881 0.50023164336687 0.082093 0 hm5C_site_56649 DeepMRMD:0.082093;iRNA_m5C:0 56650 chr17 54431282 54431282 1 + C G BLCA 54431281 + 54431261 54431301 41 TCCTCCTGTATCAGTACACACCAGAAGAACTTGACCTCAAC TCCTCCTGTATCAGTACACACGAGAAGAACTTGACCTCAAC < 41bp 0.505532087861595 0.788187920952918 0.17461595 0.43092072 prediction 0.565311666182645 Functional Gain - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54431281 chr17:54431282 nonsynonymous SNV 0.813 0 22 hm5C_associated_SNPs_103505 0 0 0 0 1 nucleus 0.500223387233437 0.500231885602999 0 1.69967391248083e-05 hm5C_site_56650 DeepMRMD:0;iRNA_m5C:1.69967391248083e-05 56651 chr19 49055524 49055524 1 + C G rs16982141 49055523 + 49055503 49055543 41 ACCTGCCATGGACGGGCCCGCCGAGCCCCAGATCCCGGGCT ACCTGCCATGGACGGGCCCGCGGAGCCCCAGATCCCGGGCT < 41bp 0.533053034893948 0.815705834292759 0.52460825 0.8734982 prediction 0.565305598797623 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49055523 chr19:49055524 synonymous SNV . 0 22 hm5C_associated_SNPs_103506 0 0 0 0 1 exosome 0.500231643920637 0.500231643499859 0.6977799 0 hm5C_site_56651 DeepMRMD:0.6977799;iRNA_m5C:0 56652 chr19 2247812 2247812 1 + C G STAD 2247811 + 2247791 2247831 41 TGGAGAAGCCCCCGGCTCCACCCAGCCTCCCTGCTGGCCCC TGGAGAAGCCCCCGGCTCCACGCAGCCTCCCTGCTGGCCCC < 41bp 0.529457602614502 0.812101311521811 0.045555264 0.17926061 prediction 0.565287417814618 Functional Gain - SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2247811 chr19:2247812 nonsynonymous SNV 0.640 1 22 hm5C_associated_SNPs_103507 0 0 1 0 1 Cytosol 0.500231643547166 0.500231641991176 0 0 hm5C_site_56652 DeepMRMD:0;iRNA_m5C:0 56653 chr20 42695418 42695418 1 + C G LUAD 42695414 + 42695394 42695434 41 CCCAGCAGCTCGGGATCCTGCTCACCTGGCCCATCCAACCC CCCAGCAGCTCGGGATCCTGCTCAGCTGGCCCATCCAACCC < 41bp 0.501493041729489 0.784108466388208 0.055838495 0.13656628 prediction 0.565230849317438 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695414 chr20:42695418 nonsynonymous SNV 0.909 1 25 hm5C_associated_SNPs_103508 0 0 1 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56653 DeepMRMD:0;iRNA_m5C:0 56654 chr22 41903841 41903841 1 + C G rs141772938 41903840 + 41903820 41903860 41 GAGAAGATTGTGTATGGACACCTGGATGACCCCGCCAGCCA GAGAAGATTGTGTATGGACACGTGGATGACCCCGCCAGCCA < 41bp 0.540797267197274 0.82338744649811 0.32511285 0.73657274 prediction 0.565180358601671 Functional Gain - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41903840 chr22:41903841 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_103509 1 0 1 0 1 chromatin 0.500231643921093 0.500231643921092 0.47314548 0 hm5C_site_56654 DeepMRMD:0.47314548;iRNA_m5C:0 Optic atrophy 9 Optic atrophy 9 56655 chr19 2291467 2291467 1 + G T THYM 2291471 - 2291451 2291491 41 CGGCGCCTTCGCCAACCTGCCGCGCCTGCGCGTCCTGCGTC CGGCGCCTTCGCCAACCTGCCGCGACTGCGCGTCCTGCGTC < 41bp 0.61874932493262 0.901301738120078 0.18710503 0.27680278 prediction 0.565104826374916 Functional Gain - LINGO3 ENSG00000220008 CDS Human protein_coding chr19:2291471 chr19:2291467 synonymous SNV . 0 25 hm5C_associated_SNPs_103510 0 0 0 0 0 exosome 0.500232071640182 0.500232044839902 0 0 hm5C_site_56655 DeepMRMD:0;iRNA_m5C:0 56656 chr2 176965007 176965007 1 + C A LUAD 176965003 + 176964983 176965023 41 CTGCTCCAGGGGGCTCCCTGCGCCCCTGGCTTCAAGGACGA CTGCTCCAGGGGGCTCCCTGCGCCACTGGCTTCAAGGACGA < 41bp 0.621563206257724 0.904113973200489 0.18141603 0.22453171 prediction 0.565101533885531 Functional Gain - HOXD12 ENSG00000170178 CDS Human protein_coding chr2:176965003 chr2:176965007 nonsynonymous SNV 0.012 1 25 hm5C_associated_SNPs_103511 0 0 0 0 1 unknown 0.500231643921092 0.500231643921163 0 1.4210854715202e-13 hm5C_site_56656 DeepMRMD:0;iRNA_m5C:1.4210854715202e-13 56657 chr1 67155926 67155926 1 + C A LUAD 67155922 + 67155902 67155942 41 TTCCAGCCCTCCTCCAATAGCACCCTTAGCGCGGGCTGAAA TTCCAGCCCTCCTCCAATAGCACCATTAGCGCGGGCTGAAA < 41bp 0.359697533001821 0.782539780367091 0.01231721 0.091345996 prediction 0.565079560734182 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67155922 chr1:67155926 synonymous SNV . 0 25 hm5C_associated_SNPs_103512 0 0 0 0 2 Cytosol 0.500231643921092 0.50023164392036 0 0 hm5C_site_56657 DeepMRMD:0;iRNA_m5C:0 56658 chrX 48542809 48542809 1 + T G UCEC 48542807 + 48542787 48542827 41 ACTTCATCCGCCTTTACGGCCTTCAGGTGACCCCCCCACCC ACTTCATCCGCCTTTACGGCCTGCAGGTGACCCCCCCACCC < 41bp 0.559736395457528 0.842260870072293 0.37146306 0.23776832 prediction 0.56504894922953 Functional Gain - WAS ENSG00000015285 CDS Human protein_coding chrX:48542807 chrX:48542809 synonymous SNV . 0 23 hm5C_associated_SNPs_103513 0 0 0 0 1 Endoplasmic reticulum 0.500231643921115 0.500231643923026 0 3.82227582917949e-12 hm5C_site_56658 DeepMRMD:0;iRNA_m5C:3.82227582917949e-12 56659 chr6 151815183 151815183 1 + C A rs147911398 151815179 + 151815159 151815199 41 TTACCCGTTGCCCGAGGAGACACCCGCGCCACCCGCCGGCT TTACCCGTTGCCCGAGGAGACACCAGCGCCACCCGCCGGCT < 41bp 0.583683646134177 0.866202320498881 0.7432875 0.91369236 prediction 0.565037348729408 Functional Gain - CCDC170 ENSG00000120262 UTR5 Human protein_coding chr6:151815179 chr6:151815183 . . 0 25 hm5C_associated_SNPs_103514 0 0 0 0 0 Nucleus 0.500231643919851 0.500231643887807 0.34080972 0 hm5C_site_56659 DeepMRMD:0.34080972;iRNA_m5C:0 56660 chr3 156763461 156763461 1 + C G LUSC 156763460 + 156763440 156763480 41 TCTCCCCCAGCCACATCCTCCCAGGGGTGGAGCATCTTCAG TCTCCCCCAGCCACATCCTCCGAGGGGTGGAGCATCTTCAG < 41bp 0.533203076912106 0.815716658500809 0.8249981 0.89719486 prediction 0.565027163177407 Functional Gain - LEKR1 ENSG00000197980 CDS Human protein_coding chr3:156763460 chr3:156763461 synonymous SNV . 0 22 hm5C_associated_SNPs_103515 0 0 0 0 0 chromatin 0.500231642307285 0.500230924845173 0.14439352 0 hm5C_site_56660 DeepMRMD:0.14439352;iRNA_m5C:0 56661 chr20 21687575 21687575 1 + C G LUAD 21687574 + 21687554 21687594 41 CTACCCCAGTCCCGTGTCGCCCACGGGCGCCAAGATGGGCA CTACCCCAGTCCCGTGTCGCCGACGGGCGCCAAGATGGGCA < 41bp 0.538503549907319 0.821003031685622 0.06319246 0.27626014 prediction 0.564998963556606 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21687574 chr20:21687575 synonymous SNV . 0 22 hm5C_associated_SNPs_103516 0 0 0 0 0 unknown 0.500231643921484 0.500231630093836 0 0 hm5C_site_56661 DeepMRMD:0;iRNA_m5C:0 56662 chr14 52781631 52781631 1 + C A LUSC 52781627 + 52781607 52781647 41 TCGCCATGACCTTCTTCAGCCTGGCCACGATGCTCATGCTC TCGCCATGACCTTCTTCAGCCTGGACACGATGCTCATGCTC < 41bp 0.62229328465807 0.904791849926473 0.29728955 0.28509212 prediction 0.564997130536806 Functional Gain - PTGER2 ENSG00000125384 CDS Human protein_coding chr14:52781627 chr14:52781631 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103517 0 0 0 0 0 exosome 0.500375938068667 0.500242063393701 0 0 hm5C_site_56662 DeepMRMD:0;iRNA_m5C:0 56663 chr11 125267928 125267928 1 + C A COAD 125267924 + 125267904 125267944 41 TGATCTAGGGGGGCCCTACTCCCCCAACCAGCCCTCCATCA TGATCTAGGGGGGCCCTACTCCCCAAACCAGCCCTCCATCA < 41bp 0.350581888072829 0.782494549875128 0.039802194 0.13157591 prediction 0.564989099750256 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125267924 chr11:125267928 synonymous SNV . 0 25 hm5C_associated_SNPs_103518 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56663 DeepMRMD:0;iRNA_m5C:0 56664 chr19 45176160 45176160 1 + C G LUSC 45176156 + 45176136 45176176 41 GCTGCGCCGCGCCCAGCCTACAGACAGTGGCACCTACCAAG GCTGCGCCGCGCCCAGCCTACAGAGAGTGGCACCTACCAAG < 41bp 0.484579102783234 0.782492251214223 0.17093062 0.40909693 prediction 0.564984502428447 Functional Gain - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45176156 chr19:45176160 nonsynonymous SNV 0.629 5 25 hm5C_associated_SNPs_103519 0 0 0 0 1 Cytosol 0.500231643889859 0.500231643921068 0 6.24178486674509e-11 hm5C_site_56664 DeepMRMD:0;iRNA_m5C:6.24178486674509e-11 56665 chrX 150832794 150832794 1 + C G rs202217272 150832793 + 150832773 150832813 41 GATCCAGAGGACTCAGTGGACCTGGGGGCTGCTGGCGCAAG GATCCAGAGGACTCAGTGGACGTGGGGGCTGCTGGCGCAAG < 41bp 0.504377594493501 0.786865693243919 0.6843655 0.8657435 prediction 0.564976197500835 Functional Gain - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150832793 chrX:150832794 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_103520 0 0 0 0 1 cytosol 0.500231177873302 0.500231643921112 0.362756 9.32095618688678e-07 hm5C_site_56665 DeepMRMD:0.362756;iRNA_m5C:9.32095618688678e-07 56666 chr12 52452615 52452615 1 + C A BRCA 52452611 + 52452591 52452631 41 CGTCTGTTGGGCAAACTGCCCGAGCTGCGGACCCTGTGCAC CGTCTGTTGGGCAAACTGCCCGAGATGCGGACCCTGTGCAC < 41bp 0.608965800486233 0.891451407537814 0.7984544 0.916467 prediction 0.564971214103162 Functional Gain - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52452611 chr12:52452615 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103521 0 0 1 0 0 Endoplasmic reticulum 0.500231643540844 0.500231643820405 0.2360252 5.59122748100549e-10 hm5C_site_56666 DeepMRMD:0.2360252;iRNA_m5C:5.59122748100549e-10 56667 chr6 44274791 44274791 1 + C G rs111839169 44274787 + 44274767 44274807 41 GCCTAAAGGGGTTCAGAGCCCAGACATGAATCCCCAGCGGC GCCTAAAGGGGTTCAGAGCCCAGAGATGAATCCCCAGCGGC < 41bp 0.513752024540408 0.796228212173482 0.17128542 0.5203754 prediction 0.564952375266148 Functional Gain - AARS2 ENSG00000178233;ENSG00000272442 UTR3 Human other chr6:44274787 chr6:44274791 . . 0 25 hm5C_associated_SNPs_103522 0 0 0 0 1 Endoplasmic reticulum 0.500231645676307 0.500231643946575 0.0407508000000001 0 hm5C_site_56667 DeepMRMD:0.0407508000000001;iRNA_m5C:0 56668 chr11 74204727 74204727 1 + A C rs4944895 74204730 - 74204710 74204750 41 CGATGCGGCAACCCGCCGTTCGGTTGGTGCGCCTGGGTCGG CGATGCGGCAACCCGCCGTTCGGGTGGTGCGCCTGGGTCGG < 41bp 0.60285744457007 0.885305287526682 0.58102024 0.90631676 prediction 0.564895685913224 Functional Gain - LIPT2 ENSG00000175536 CDS Human protein_coding chr11:74204730 chr11:74204727 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_103523 0 0 1 0 0 exosome 0.500231643921092 0.500231643921087 0.65059304 0 hm5C_site_56668 DeepMRMD:0.65059304;iRNA_m5C:0 56669 chr22 45128218 45128218 1 + C G rs150104103 45128217 + 45128197 45128237 41 AAGCTAGAGGATGCGCTGGCCCGGGCCCATGCCCGTGTGCC AAGCTAGAGGATGCGCTGGCCGGGGCCCATGCCCGTGTGCC < 41bp 0.480488420323627 0.782442593866028 0.4189783 0.9064132 prediction 0.564885187732056 Functional Gain - PRR5 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45128217 chr22:45128218 nonsynonymous SNV 0.847 2 22 hm5C_associated_SNPs_103524 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.8128264 0 hm5C_site_56669 DeepMRMD:0.8128264;iRNA_m5C:0 56670 chr5 153054124 153054124 1 + T A LUAD 153054120 + 153054100 153054140 41 GCGCCAATGTGACAGGTTTCCAGCTGGTGAACTACACAGAC GCGCCAATGTGACAGGTTTCCAGCAGGTGAACTACACAGAC < 41bp 0.507860006585147 0.790294613599168 0.730146 0.87568367 prediction 0.564869214028042 Functional Gain - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153054120 chr5:153054124 nonsynonymous SNV 0.992 5 25 hm5C_associated_SNPs_103525 0 0 0 0 2 exosome 0.500231799491538 0.500231359707811 0.29107534 0 hm5C_site_56670 DeepMRMD:0.29107534;iRNA_m5C:0 56671 chr15 39877708 39877708 1 + T C KIRC 39877706 + 39877686 39877726 41 TGCAAAAAGGTGTCCTGCCCCATCATGCCCTGCTCCAATGC TGCAAAAAGGTGTCCTGCCCCACCATGCCCTGCTCCAATGC < 41bp 0.512177555201189 0.794610363681187 0.10483971 0.06659359 prediction 0.564865616959996 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39877706 chr15:39877708 nonsynonymous SNV 0.999 0 23 hm5C_associated_SNPs_103526 0 0 1 0 2 cytosol 0.50023166110459 0.500231648518016 0 0 hm5C_site_56671 DeepMRMD:0;iRNA_m5C:0 56672 chr15 55642961 55642961 1 + T A UCEC 55642957 + 55642937 55642977 41 TCTAAGTTTCCTGTTTTTATCAAATTTGTTCCTCGCCCTTT TCTAAGTTTCCTGTTTTTATCAAAATTGTTCCTCGCCCTTT < 41bp 0.538856683033683 0.821281480676634 0.41025975 0.86969036 prediction 0.564849595285902 Functional Gain - PIGB ENSG00000069943 CDS Human protein_coding chr15:55642957 chr15:55642961 nonsynonymous SNV 0.930 4 25 hm5C_associated_SNPs_103527 0 0 0 0 1 Endoplasmic reticulum 0.50023188293222 0.50023164406082 0.73938072 0 hm5C_site_56672 DeepMRMD:0.73938072;iRNA_m5C:0 56673 chr4 9784674 9784674 1 + T A LUSC 9784670 + 9784650 9784690 41 TTCCCCTGCGTCAGTGAGACCACCTTCGACGTCTTCGTCTG TTCCCCTGCGTCAGTGAGACCACCATCGACGTCTTCGTCTG < 41bp 0.558656694137436 0.841073918468214 0.05897644 0.08906451 prediction 0.564834448661556 Functional Gain - DRD5 ENSG00000169676 CDS Human protein_coding chr4:9784670 chr4:9784674 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_103528 0 0 0 0 0 unknown 0.500231643877732 0.500231644027529 0 2.99594793418123e-10 hm5C_site_56673 DeepMRMD:0;iRNA_m5C:2.99594793418123e-10 56674 chr10 64565078 64565078 1 + T A UCEC 64565074 + 64565054 64565094 41 CCGCCCAACCTGCCGCCAGTCACCTACATGCACATCTACGA CCGCCCAACCTGCCGCCAGTCACCAACATGCACATCTACGA < 41bp 0.561019075600625 0.843430588740354 0.03986001 0.11704105 prediction 0.564823026279457 Functional Gain - ADO ENSG00000181915 CDS Human protein_coding chr10:64565074 chr10:64565078 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103529 0 0 0 0 0 exosome 0.500230880026851 0.500231553305474 0 1.34655724548516e-06 hm5C_site_56674 DeepMRMD:0;iRNA_m5C:1.34655724548516e-06 56675 chr9 140510315 140510315 1 + G T UCEC 140510319 - 140510299 140510339 41 AAATGCTGTTCCACAGAACCCTGCCTTTCAGGCCTTGGAGA AAATGCTGTTCCACAGAACCCTGCATTTCAGGCCTTGGAGA < 41bp 0.390067702978398 0.782398379486549 0.10282263 0.16129401 prediction 0.564796758973097 Functional Gain - ARRDC1-AS1 ENSG00000203993 CDS Human antisense chr9:140510319 chr9:140510315 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_103530 0 0 1 0 0 unknown 0.500231643921363 0.500231643921092 0 0 hm5C_site_56675 DeepMRMD:0;iRNA_m5C:0 56676 chr20 36982743 36982743 1 + T A rs571584747 36982739 + 36982719 36982759 41 GCATCAGCATTTCGGTCAACCTCCTGTTGGGCAGCGAGTCC GCATCAGCATTTCGGTCAACCTCCAGTTGGGCAGCGAGTCC < 41bp 0.580538115852225 0.862930533678698 0.06864342 0.93865645 prediction 0.564784835652947 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36982739 chr20:36982743 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_103531 0 0 0 0 2 exosome 0.500249258871324 0.50033459513537 0.8773129 0.00017067252809122 hm5C_site_56676 DeepMRMD:0.8773129;iRNA_m5C:0.00017067252809122 56677 chr19 54198501 54198501 1 + T G STAD 54198498 + 54198478 54198518 41 CCTCTAGAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGAA CCTCTAGAGGGAAGCGCTTTCTGGTGTCTGAAAGAAAAGAA < 41bp 0.552008742355545 0.834400210677558 0.19773445 0.33429676 prediction 0.564782936644026 Functional Gain - MIR519B ENSG00000207825 ncRNA_exonic Human miRNA chr19:54198498 chr19:54198501 . . 0 24 hm5C_associated_SNPs_103532 0 0 1 0 0 unknown 0.500231643913624 0.500231643618978 0 0 hm5C_site_56677 DeepMRMD:0;iRNA_m5C:0 56678 chr6 37142034 37142034 1 + C A rs2070892 37142030 + 37142010 37142050 41 AGATCCCAGGCCCCTGGAGGCTGCCTCCCAACAGTGGGGAA AGATCCCAGGCCCCTGGAGGCTGCATCCCAACAGTGGGGAA < 41bp 0.385326824465849 0.782360405696562 0.10604039 0.14679879 prediction 0.564720811393123 Functional Gain - PIM1 ENSG00000137193 UTR3 Human protein_coding chr6:37142030 chr6:37142034 . . 0 25 hm5C_associated_SNPs_103533 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_56678 DeepMRMD:0;iRNA_m5C:0 56679 chr19 16060085 16060085 1 + C A KIRC 16060081 + 16060061 16060101 41 ATGCTGGCTGATCTGCTTTCCACCCATCATTCCATCACCTT ATGCTGGCTGATCTGCTTTCCACCAATCATTCCATCACCTT < 41bp 0.400512471171054 0.782354785062431 0.01758653 0.032167524 prediction 0.564709570124862 Functional Gain - OR10H4 ENSG00000176231 CDS Human protein_coding chr19:16060081 chr19:16060085 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_103534 0 0 0 0 0 unknown 0.500231644553398 0.500231643833549 0 0 hm5C_site_56679 DeepMRMD:0;iRNA_m5C:0 56680 chr19 57802628 57802628 1 + C A OV 57802624 + 57802604 57802644 41 ACTTCAACCGCAGGTCACACCTCACACGGCACCAGCGGACT ACTTCAACCGCAGGTCACACCTCAAACGGCACCAGCGGACT < 41bp 0.360081187269596 0.782348087574219 0.019907266 0.16415128 prediction 0.564696175148438 Functional Gain - ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57802624 chr19:57802628 nonsynonymous SNV 0.149 1 25 hm5C_associated_SNPs_103535 0 0 1 0 0 Nucleus 0.500106469072141 0.50015589889857 0 9.88596528572749e-05 hm5C_site_56680 DeepMRMD:0;iRNA_m5C:9.88596528572749e-05 56681 chr8 104153261 104153261 1 + C G rs372167132 104153260 + 104153240 104153280 41 GCCGCCGCCCCGGACAGCGGCCCCGAAGCGGGCGGCCTGCA GCCGCCGCCCCGGACAGCGGCGCCGAAGCGGGCGGCCTGCA < 41bp 0.518585090256141 0.80093000916396 0.14251593 0.7801771 prediction 0.564689837815637 Functional Gain - BAALC ENSG00000164929 CDS Human protein_coding chr8:104153260 chr8:104153261 nonsynonymous SNV 0.990 1 22 hm5C_associated_SNPs_103536 0 0 0 0 1 exosome 0.500231643921084 0.500231643921721 0.5603542 1.2738698984549e-12 hm5C_site_56681 DeepMRMD:0.5603542;iRNA_m5C:1.2738698984549e-12 56682 chr5 23524525 23524525 1 + C G LUSC 23524521 + 23524501 23524541 41 AGGCAGATCTTCTATAGAACCTGCCGAGTCATTAGGCCAGG AGGCAGATCTTCTATAGAACCTGCGGAGTCATTAGGCCAGG < 41bp 0.507406105702915 0.78973522905546 0.20862103 0.37684593 prediction 0.564658246705089 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23524521 chr5:23524525 nonsynonymous SNV 0.468 3 25 hm5C_associated_SNPs_103537 0 0 0 0 1 unknown 0.500231644754017 0.500231625539255 0 0 hm5C_site_56682 DeepMRMD:0;iRNA_m5C:0 56683 chr19 39395721 39395721 1 + C A LIHC 39395717 + 39395697 39395737 41 GGATTTTCTTCTAGGCTTCTCGGCCGGCACTGAGTACATGG GGATTTTCTTCTAGGCTTCTCGGCAGGCACTGAGTACATGG < 41bp 0.623093754888446 0.905419037968416 0.38678327 0.48411766 prediction 0.564650566159939 Functional Gain - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395717 chr19:39395721 synonymous SNV . 0 25 hm5C_associated_SNPs_103538 0 0 1 0 3 Ribosome 0.50023164391264 0.500231643907495 0 0 hm5C_site_56683 DeepMRMD:0;iRNA_m5C:0 56684 chr21 45711057 45711057 1 + T G UCEC 45711055 + 45711035 45711075 41 GGCTGCCCTCGGGCCTTCCACCTGGCCTGCCTGTCCCCTCC GGCTGCCCTCGGGCCTTCCACCGGGCCTGCCTGTCCCCTCC < 41bp 0.591323944628061 0.873646628386021 0.68634176 0.94247663 prediction 0.56464536751592 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45711055 chr21:45711057 nonsynonymous SNV 0.997 4 23 hm5C_associated_SNPs_103539 0 0 0 0 2 exosome 0.500231643921092 0.500231643921127 0.51226974 6.97220059464598e-14 hm5C_site_56684 DeepMRMD:0.51226974;iRNA_m5C:6.97220059464598e-14 56685 chr12 53514576 53514576 1 + T G UCEC 53514574 + 53514554 53514594 41 TGTCCCCAACCACCAGGCATCTTCATGCTGCTGCTCATCTT TGTCCCCAACCACCAGGCATCTGCATGCTGCTGCTCATCTT < 41bp 0.448495268095076 0.782322319153504 0.13614243 0.123702526 prediction 0.564644638307009 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53514574 chr12:53514576 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_103540 0 0 0 8 2 cytosol 0.500238390807118 0.500530877376397 0 0.00058497313855832 hm5C_site_56685 DeepMRMD:0;iRNA_m5C:0.00058497313855832 56686 chr5 5242192 5242192 1 + T A LUSC 5242188 + 5242168 5242208 41 GCTGTTTCAGGGAAGGAACCCGGGTGTTGCCTGGGAATACT GCTGTTTCAGGGAAGGAACCCGGGAGTTGCCTGGGAATACT < 41bp 0.529293607371439 0.811605658882196 0.92087483 0.92390704 prediction 0.564624103021514 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5242188 chr5:5242192 synonymous SNV . 0 25 hm5C_associated_SNPs_103541 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.00606441999999996 0 hm5C_site_56686 DeepMRMD:0.00606441999999996;iRNA_m5C:0 56687 chr5 175111077 175111077 1 + T A COAD 175111073 + 175111053 175111093 41 GTTCTGTGGCTGGGCTATGCCAACTCAGCCCTGAACCCCAT GTTCTGTGGCTGGGCTATGCCAACACAGCCCTGAACCCCAT < 41bp 0.549402365051133 0.831708560234225 0.021454245 0.033801228 prediction 0.564612390366184 Functional Gain - HRH2 ENSG00000113749 CDS Human protein_coding chr5:175111073 chr5:175111077 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_103542 0 0 0 0 0 nucleus 0.500231634490972 0.50023164627892 0 2.35758974564959e-08 hm5C_site_56687 DeepMRMD:0;iRNA_m5C:2.35758974564959e-08 56688 chr7 1132483 1132483 1 + T G rs138657567 1132480 + 1132460 1132500 41 CAGTCGGATGTGAGGTTCAGCAGTGCCGTGTAGACAGCCTT CAGTCGGATGTGAGGTTCAGCAGGGCCGTGTAGACAGCCTT < 41bp 0.393090815794901 0.782302591826291 0.28223664 0.8852494 prediction 0.564605183652583 Functional Gain - GPER1 ENSG00000164850 CDS Human protein_coding chr7:1132480 chr7:1132483 nonsynonymous SNV 0.423 1 24 hm5C_associated_SNPs_103543 0 0 0 0 0 Cytosol 0.500231643921065 0.500231643911786 0.7704988 0 hm5C_site_56688 DeepMRMD:0.7704988;iRNA_m5C:0 56689 chr5 23524542 23524542 1 + C A UCEC 23524538 + 23524518 23524558 41 AACCTGCCGAGTCATTAGGCCAGGCTGTGAACTGCTGGTCT AACCTGCCGAGTCATTAGGCCAGGATGTGAACTGCTGGTCT < 41bp 0.379816973963045 0.782290886459793 0.44560373 0.7295971 prediction 0.564581772919585 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23524538 chr5:23524542 synonymous SNV . 0 25 hm5C_associated_SNPs_103544 0 0 0 0 2 unknown 0.500231643914226 0.500231643919555 0.4591942 1.06579189917966e-11 hm5C_site_56689 DeepMRMD:0.4591942;iRNA_m5C:1.06579189917966e-11 56690 chr9 139641933 139641933 1 + C A rs73554091 139641929 + 139641909 139641949 41 TCTGGAGTGAGGGTCACCACCACCCCCACGACGTTCTTCAT TCTGGAGTGAGGGTCACCACCACCACCACGACGTTCTTCAT < 41bp 0.374706035777731 0.782283669698109 0.29699922 0.29870442 prediction 0.564567339396218 Functional Gain - LCN6 ENSG00000204003;ENSG00000267206 CDS Human other chr9:139641929 chr9:139641933 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_103545 0 0 0 0 0 exosome 0.500231635847804 0.500231643331472 0 1.49673355931412e-08 hm5C_site_56690 DeepMRMD:0;iRNA_m5C:1.49673355931412e-08 56691 chr10 99995881 99995881 1 + C G rs144632612 99995880 + 99995860 99995900 41 TCGAAGTAAGCAGAGCAAAACCGAACGAGAAGCAGAGCTCA TCGAAGTAAGCAGAGCAAAACGGAACGAGAAGCAGAGCTCA < 41bp 0.486252099216386 0.782281565079693 0.7049532 0.8730625 prediction 0.564563130159387 Functional Gain - R3HCC1L ENSG00000166024 CDS Human protein_coding chr10:99995880 chr10:99995881 synonymous SNV . 0 22 hm5C_associated_SNPs_103546 0 0 1 0 1 Nucleus 0.500231648030957 0.500231644017023 0.3362186 0 hm5C_site_56691 DeepMRMD:0.3362186;iRNA_m5C:0 56692 chr16 1826215 1826215 1 + T A PRAD 1826211 + 1826191 1826231 41 CTTCCTGACCACAGCCAACCCTGATCTCCTGCTGGACCTGG CTTCCTGACCACAGCCAACCCTGAACTCCTGCTGGACCTGG < 41bp 0.518618642617407 0.800899186857281 0.120951235 0.3699475 prediction 0.564561088479749 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1826211 chr16:1826215 nonsynonymous SNV 0.103 0 25 hm5C_associated_SNPs_103547 0 0 1 0 0 chromatin 0.500231643920382 0.500231643921092 0 1.42175160533498e-12 hm5C_site_56692 DeepMRMD:0;iRNA_m5C:1.42175160533498e-12 56693 chr13 58207784 58207784 1 + C A LUAD 58207780 + 58207760 58207800 41 GCTGAGCGAGGCCGCCCCTCCCGGCACCGTCATCGCCCTGG GCTGAGCGAGGCCGCCCCTCCCGGAACCGTCATCGCCCTGG < 41bp 0.617157232492755 0.899430200093973 0.876933 0.9053265 prediction 0.564545935202435 Functional Gain - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58207780 chr13:58207784 synonymous SNV . 0 25 hm5C_associated_SNPs_103548 0 0 0 0 0 exosome 0.500232802318001 0.500231797259931 0.0567870000000001 0 hm5C_site_56693 DeepMRMD:0.0567870000000001;iRNA_m5C:0 56694 chr7 53104211 53104211 1 + T A SARC 53104207 + 53104187 53104227 41 TGCGGCAGCTGCAGTAGGGTCTCCTTCGCCCTCGAGGTCAC TGCGGCAGCTGCAGTAGGGTCTCCATCGCCCTCGAGGTCAC < 41bp 0.552960592068978 0.835212926035838 0.039114177 0.94961333 prediction 0.56450466793372 Functional Gain - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53104207 chr7:53104211 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_103549 0 0 0 0 0 unknown 0.500231643921112 0.500231643921314 0.89922666 4.04565270173407e-13 hm5C_site_56694 DeepMRMD:0.89922666;iRNA_m5C:4.04565270173407e-13 56695 chr1 233463663 233463663 1 + C A rs544380092 233463659 + 233463639 233463679 41 GCCGTCACCGATCGCGATTCCTACCCCCTCGCCTTCCCCCG GCCGTCACCGATCGCGATTCCTACACCCTCGCCTTCCCCCG < 41bp 0.466494765224937 0.78224127315194 0.039441586 0.38152114 prediction 0.56448254630388 Functional Gain - MAP3K21 ENSG00000143674 UTR5 Human protein_coding chr1:233463659 chr1:233463663 . . 0 25 hm5C_associated_SNPs_103550 0 0 1 0 0 unknown 0.500231643921088 0.500231643921092 0 8.21565038222616e-15 hm5C_site_56695 DeepMRMD:0;iRNA_m5C:8.21565038222616e-15 56696 chr3 159482487 159482487 1 + C A rs77009616 159482483 + 159482463 159482503 41 GAGGAGGAGGAAGAGGAGGACGAGCGCGACCAGCGAGGGTA GAGGAGGAGGAAGAGGAGGACGAGAGCGACCAGCGAGGGTA < 41bp 0.568455496727132 0.850695028885025 0.89253736 0.8967596 prediction 0.564479064315786 Functional Gain - IQCJ-SCHIP1;SCHIP1 ENSG00000250588 CDS Human other chr3:159482483 chr3:159482487 nonsynonymous SNV 0.474 0 25 hm5C_associated_SNPs_103551 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0.00844448000000009 0 hm5C_site_56696 DeepMRMD:0.00844448000000009;iRNA_m5C:0 56697 chr11 62557581 62557581 1 + C A rs78079991 62557577 + 62557557 62557597 41 TGCCCAAGTGCCTGTAATCCCCCCCCTCAAGGCCCTGTTTA TGCCCAAGTGCCTGTAATCCCCCCACTCAAGGCCCTGTTTA < 41bp 0.396331417502868 0.782206304326525 0.02317065 0.056786478 prediction 0.564412608653051 Functional Gain - TMEM179B ENSG00000168569;ENSG00000185475 UTR3 Human other chr11:62557577 chr11:62557581 . . 0 25 hm5C_associated_SNPs_103552 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_56697 DeepMRMD:0;iRNA_m5C:0 56698 chr8 23428924 23428924 1 + C G rs79810688 23428923 + 23428903 23428943 41 CATCCGGACGGTGTGGAGGACCGAGGGGTTGGGGGCCTTCT CATCCGGACGGTGTGGAGGACGGAGGGGTTGGGGGCCTTCT < 41bp 0.532469064972576 0.814674413735965 0.8878937 0.9176776 prediction 0.564410697526779 Functional Gain - SLC25A37 ENSG00000147454 CDS Human protein_coding chr8:23428923 chr8:23428924 synonymous SNV . 0 22 hm5C_associated_SNPs_103553 0 0 1 0 1 Ribosome 0.500231644099565 0.500231683408227 0.0595677999999999 7.86173239841759e-08 hm5C_site_56698 DeepMRMD:0.0595677999999999;iRNA_m5C:7.86173239841759e-08 56699 chr4 187173218 187173218 1 + T G SKCM 187173216 + 187173196 187173236 41 CATTGTTGGAGGAACAAACTCTTCTTGGGGAGAGTGGCCCT CATTGTTGGAGGAACAAACTCTGCTTGGGGAGAGTGGCCCT < 41bp 0.56257143556437 0.844770573914022 0.27704683 0.41806132 prediction 0.564398276699305 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187173216 chr4:187173218 nonsynonymous SNV 0.966 1 23 hm5C_associated_SNPs_103554 0 0 0 0 1 Endoplasmic reticulum 0.500231643921032 0.500231643921093 0 1.20348175869367e-13 hm5C_site_56699 DeepMRMD:0;iRNA_m5C:1.20348175869367e-13 56700 chr18 29788190 29788190 1 + C G LIHC 29788189 + 29788169 29788209 41 GGCAACGGGTTTCACAGGTTCCCAGGGGGCCAGAGAGTGAT GGCAACGGGTTTCACAGGTTCGCAGGGGGCCAGAGAGTGAT < 41bp 0.539644820026267 0.821833473927221 0.10205904 0.3157643 prediction 0.564377307801907 Functional Gain - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29788189 chr18:29788190 nonsynonymous SNV 0.027 0 22 hm5C_associated_SNPs_103555 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56700 DeepMRMD:0;iRNA_m5C:0 56701 chrX 118151528 118151528 1 + T A COAD 118151524 + 118151504 118151544 41 CCGAATGGCCCAGCCTGGTGCTGGTGGATGTTAGCAGTTCT CCGAATGGCCCAGCCTGGTGCTGGAGGATGTTAGCAGTTCT < 41bp 0.479528273636942 0.782178836707251 0.36549217 0.54473925 prediction 0.564357673414503 Functional Gain - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118151524 chrX:118151528 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103556 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0.0894785 0 hm5C_site_56701 DeepMRMD:0.0894785;iRNA_m5C:0 56702 chr7 65217260 65217260 1 + C G rs567217501 65217259 + 65217239 65217279 41 ACTAAAAATACAAAAATTAGCCGGGCACGGTCCTGCACAGT ACTAAAAATACAAAAATTAGCGGGGCACGGTCCTGCACAGT < 41bp 0.496048391722695 0.782176801030928 0.6734909 0.9315538 prediction 0.564353602061856 Functional Gain - CCT6P1;LOC441242 ENSG00000228409 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:65217259 chr7:65217260 . . 0 22 hm5C_associated_SNPs_103557 0 0 1 0 1 unknown 0.500202258869509 0.500231195484146 0.5161258 5.78732292735307e-05 hm5C_site_56702 DeepMRMD:0.5161258;iRNA_m5C:5.78732292735307e-05 56703 chr4 89318075 89318075 1 + C A HNSC 89318071 + 89318051 89318091 41 TGGTCATGGACCAAGTGACACAAGCAAGCCAACTCATCCGG TGGTCATGGACCAAGTGACACAAGAAAGCCAACTCATCCGG < 41bp 0.382092713414185 0.7821452135435 0.06213057 0.120164424 prediction 0.564290427087001 Functional Gain - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89318071 chr4:89318075 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_103558 0 0 0 0 2 Cytosol 0.500231643921093 0.500231643921146 0 1.05249142734465e-13 hm5C_site_56703 DeepMRMD:0;iRNA_m5C:1.05249142734465e-13 56704 chr7 2472599 2472599 1 + C A rs17132395 2472595 + 2472575 2472615 41 GTGAGAGGCTACGACTGGTCCCCGCGCGACGCCCGGCGCAG GTGAGAGGCTACGACTGGTCCCCGAGCGACGCCCGGCGCAG < 41bp 0.609257031528574 0.891394601009328 0.050313085 0.14617619 prediction 0.564275138961508 Functional Gain - CHST12 ENSG00000136213 CDS Human protein_coding chr7:2472595 chr7:2472599 nonsynonymous SNV 0.035 0 25 hm5C_associated_SNPs_103559 0 0 0 0 0 nucleolus 0.50023164392113 0.500231645787193 0 3.73212705184756e-09 hm5C_site_56704 DeepMRMD:0;iRNA_m5C:3.73212705184756e-09 56705 chr9 27183515 27183515 1 + T G CESC 27183512 + 27183492 27183532 41 CCAGATCATATAGAAGTAAACAGTGGTAAATTTAATCCCAT CCAGATCATATAGAAGTAAACAGGGGTAAATTTAATCCCAT < 41bp 0.398626937601696 0.782136046058698 0.32759482 0.91028005 prediction 0.564272092117397 Functional Gain - TEK ENSG00000120156 CDS Human protein_coding chr9:27183512 chr9:27183515 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_103560 0 0 0 0 1 nucleoplasm 0.500231642271369 0.500231643668682 0.8205601 2.79462608610004e-09 hm5C_site_56705 DeepMRMD:0.8205601;iRNA_m5C:2.79462608610004e-09 56706 chr15 24921123 24921123 1 + C A LUSC 24921119 + 24921099 24921139 41 TCCCGGGACGCCTCCCCGCCCGGTCGGGCTCACTCTGTACC TCCCGGGACGCCTCCCCGCCCGGTAGGGCTCACTCTGTACC < 41bp 0.58455303900395 0.866688684163946 0.2184262 0.36056495 prediction 0.564271290319991 Functional Gain - NPAP1 ENSG00000185823 CDS Human protein_coding chr15:24921119 chr15:24921123 synonymous SNV . 0 25 hm5C_associated_SNPs_103561 0 0 0 0 0 Nucleus 0.500231647316565 0.500231643921103 0 0 hm5C_site_56706 DeepMRMD:0;iRNA_m5C:0 56707 chr20 54824829 54824829 1 + T G COAD 54824826 + 54824806 54824846 41 AGCCTGGAATTGCGCAACACCTTTAGGGAGATTCTCTGTGG AGCCTGGAATTGCGCAACACCTTGAGGGAGATTCTCTGTGG < 41bp 0.594543989922699 0.87667797844355 0.053299546 0.09677681 prediction 0.564267977041703 Functional Gain - MC3R ENSG00000124089 CDS Human protein_coding chr20:54824826 chr20:54824829 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_103562 0 0 0 0 0 unknown 0.500231643900716 0.500231643920271 0 3.91100485330753e-11 hm5C_site_56707 DeepMRMD:0;iRNA_m5C:3.91100485330753e-11 56708 chr1 234367264 234367264 1 + C A rs34032258 234367260 + 234367240 234367280 41 AGTCGCCGCTGCTGGACGTGCTCCCGGGCGCAACTCAAGAA AGTCGCCGCTGCTGGACGTGCTCCAGGGCGCAACTCAAGAA < 41bp 0.635002526312693 0.917128753826594 0.090684354 0.8777054 prediction 0.564252455027801 Functional Gain - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234367260 chr1:234367264 synonymous SNV . 0 25 hm5C_associated_SNPs_103563 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643954717 0.7554108 6.72482070029901e-11 hm5C_site_56708 DeepMRMD:0.7554108;iRNA_m5C:6.72482070029901e-11 56709 chr5 7521010 7521010 1 + C A STAD 7521006 + 7520986 7521026 41 GGAGGCAAGGAGCACCTGGTCTGGCAGGTGGGTGCACCTCC GGAGGCAAGGAGCACCTGGTCTGGAAGGTGGGTGCACCTCC < 41bp 0.615691593852783 0.897810229218598 0.44656277 0.4523977 prediction 0.564237270731629 Functional Gain - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7521006 chr5:7521010 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_103564 0 0 0 0 1 exosome 0.500231643920965 0.500231640946103 0 0 hm5C_site_56709 DeepMRMD:0;iRNA_m5C:0 56710 chr11 5510018 5510018 1 + T A UCEC 5510014 + 5509994 5510034 41 ATCCCAGGGCTGGAGGCTGCCCACTTCTGGATTGCCATCCC ATCCCAGGGCTGGAGGCTGCCCACATCTGGATTGCCATCCC < 41bp 0.496823166811916 0.782099273251157 0.059841752 0.032420725 prediction 0.564198546502315 Functional Gain - OR52D1 ENSG00000181609 CDS Human protein_coding chr11:5510014 chr11:5510018 nonsynonymous SNV 0.073 0 25 hm5C_associated_SNPs_103565 0 0 0 0 0 chromatin 0.500231643901527 0.500231641930456 0 0 hm5C_site_56710 DeepMRMD:0;iRNA_m5C:0 56711 chr2 187627333 187627333 1 + C G BRCA 187627332 + 187627312 187627352 41 GTGGAACCACCGTCTGTTCCCCTGAGGACCCAGCTTTAAGG GTGGAACCACCGTCTGTTCCCGTGAGGACCCAGCTTTAAGG < 41bp 0.483793684949679 0.782088525051141 0.09966153 0.29271987 prediction 0.564177050102282 Functional Gain - FAM171B ENSG00000144369 CDS Human protein_coding chr2:187627332 chr2:187627333 nonsynonymous SNV 0.980 4 22 hm5C_associated_SNPs_103566 0 0 1 0 0 nucleoplasm 0.500231643921092 0.500231643921093 0 2.66453525910038e-15 hm5C_site_56711 DeepMRMD:0;iRNA_m5C:2.66453525910038e-15 56712 chr15 25311351 25311351 1 + T G rs78962900 25311349 + 25311329 25311369 41 GGCACTGCCGTGGAGAGTCTCTTGATTTGGGATGCCTCCTC GGCACTGCCGTGGAGAGTCTCTGGATTTGGGATGCCTCCTC < 41bp 0.459421536307564 0.782086703505501 0.75654453 0.8559934 prediction 0.564173407011002 Functional Gain - SNHG14 ENSG00000224078 ncRNA_intronic Human processed_transcript chr15:25311349 chr15:25311351 . . 0 23 hm5C_associated_SNPs_103567 0 0 1 0 0 unknown 0.500231643923463 0.500231642630751 0.19889774 0 hm5C_site_56712 DeepMRMD:0.19889774;iRNA_m5C:0 56713 chr8 11627526 11627526 1 + C A rs553934634 11627522 + 11627502 11627542 41 TGGTCTTAGACCCCCCACCTCGGGCACTCGGAAGAGAACGG TGGTCTTAGACCCCCCACCTCGGGAACTCGGAAGAGAACGG < 41bp 0.563160888298414 0.845232878318487 0.46501 0.83728325 prediction 0.564143980040146 Functional Gain - NEIL2 ENSG00000154328 UTR5 Human protein_coding chr8:11627522 chr8:11627526 . . 0 25 hm5C_associated_SNPs_103568 0 0 0 0 0 Ribosome 0.500231643921041 0.500231643921039 0.6745665 0 hm5C_site_56713 DeepMRMD:0.6745665;iRNA_m5C:0 56714 chr19 6919585 6919585 1 + T A LUSC 6919581 + 6919561 6919601 41 ACCACTGGTGTGGCTTTTGTCTCCTTTGTGGGCATGGAATC ACCACTGGTGTGGCTTTTGTCTCCATTGTGGGCATGGAATC < 41bp 0.576888007604449 0.858949749521216 0.15257967 0.9556782 prediction 0.564123483833533 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6919581 chr19:6919585 nonsynonymous SNV 0.986 2 25 hm5C_associated_SNPs_103569 0 0 0 0 1 exosome 0.500231643921137 0.500231643921091 0.9113564 0 hm5C_site_56714 DeepMRMD:0.9113564;iRNA_m5C:0 56715 chr10 45869715 45869715 1 + C A rs377286166 45869711 + 45869691 45869731 41 GAGGCTCCCGGCGCTCGCTGCTCCCGCGGCCCGCGCCATGC GAGGCTCCCGGCGCTCGCTGCTCCAGCGGCCCGCGCCATGC < 41bp 0.501469401427027 0.783529985731952 0.22474846 0.9342052 prediction 0.564121168609849 Functional Gain - ALOX5 ENSG00000012779 UTR5 Human protein_coding chr10:45869711 chr10:45869715 . . 0 25 hm5C_associated_SNPs_103570 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921093 0.8684104 2.22044604925031e-16 hm5C_site_56715 DeepMRMD:0.8684104;iRNA_m5C:2.22044604925031e-16 56716 chr5 164028056 164028056 1 + C A COAD 164028052 + 164028032 164028072 41 GGAGTGGGTGGACCCAATGCCAGGCCGGCCGTGCTTCACGG GGAGTGGGTGGACCCAATGCCAGGACGGCCGTGCTTCACGG < 41bp 0.574924108037285 0.85697242027654 0.8386644 0.87628317 prediction 0.564096624478511 Functional Gain - LOC102546299;NONE ENSG00000241956;ENSG00000253600 ncRNA_exonic Human other chr5:164028052 chr5:164028056 . . 0 25 hm5C_associated_SNPs_103571 0 0 0 0 1 unknown 0.500231644243483 0.500231643921493 0.07523754 0 hm5C_site_56716 DeepMRMD:0.07523754;iRNA_m5C:0 56717 chr19 39905660 39905660 1 + C G rs144626871 39905659 + 39905639 39905679 41 AGCCCCCACCATGGCCTCCCCCCGAGGTTCTGGGAGCTCCA AGCCCCCACCATGGCCTCCCCGCGAGGTTCTGGGAGCTCCA < 41bp 0.474838172001039 0.782048080222052 0.392835 0.76543045 prediction 0.564096160444105 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39905659 chr19:39905660 synonymous SNV . 0 22 hm5C_associated_SNPs_103572 0 0 1 0 1 Nucleus 0.500231644343809 0.500231643829509 0.5308609 0 hm5C_site_56717 DeepMRMD:0.5308609;iRNA_m5C:0 56718 chr1 6647572 6647572 1 + C G OV 6647568 + 6647548 6647588 41 GTGCCAAGTGCTTCCTGTCTCGGACAGAGCTGCAGCTGCAT GTGCCAAGTGCTTCCTGTCTCGGAGAGAGCTGCAGCTGCAT < 41bp 0.505540051570433 0.787578510087001 0.36089408 0.90336657 prediction 0.564076917033136 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6647568 chr1:6647572 nonsynonymous SNV 0.967 1 25 hm5C_associated_SNPs_103573 0 0 0 0 1 Nucleus 0.500231819243443 0.500231427155101 0.80673314 0 hm5C_site_56718 DeepMRMD:0.80673314;iRNA_m5C:0 56719 chr10 21805245 21805245 1 + C G BRCA 21805244 + 21805224 21805264 41 TCTTGAGGTCGGGAAGTCTGCCGGCATCCTCGAAAGCAGCG TCTTGAGGTCGGGAAGTCTGCGGGCATCCTCGAAAGCAGCG < 41bp 0.519569138188728 0.801604388110775 0.5796589 0.9044205 prediction 0.564070499844093 Functional Gain - SKIDA1 ENSG00000180592 CDS Human protein_coding chr10:21805244 chr10:21805245 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_103574 0 0 0 0 0 Nucleus 0.500231643921101 0.500231643921105 0.6495232 7.99360577730113e-15 hm5C_site_56719 DeepMRMD:0.6495232;iRNA_m5C:7.99360577730113e-15 56720 chr2 200820552 200820552 1 + T A OV 200820548 + 200820528 200820568 41 CTGGCCGCTCGTTTGCTACCCCAGTTCCTGCACTCTCGGTC CTGGCCGCTCGTTTGCTACCCCAGATCCTGCACTCTCGGTC < 41bp 0.520267764617842 0.802294337555429 0.50157887 0.38759494 prediction 0.564053145875173 Functional Gain - MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200820548 chr2:200820552 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103575 0 0 1 0 0 unknown 0.500231734592094 0.500231676941152 0 0 hm5C_site_56720 DeepMRMD:0;iRNA_m5C:0 56721 chr11 63137548 63137548 1 + T A LAML 63137544 + 63137524 63137564 41 CCTCAATGGCCTTTCAGGACCTCCTGGGTCACGCTGGTGAC CCTCAATGGCCTTTCAGGACCTCCAGGGTCACGCTGGTGAC < 41bp 0.459065644219995 0.782004375991322 0.039509624 0.9280995 prediction 0.564008751982644 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63137544 chr11:63137548 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_103576 0 0 0 0 0 nucleus 0.50023164392208 0.50023164394263 0.856199 4.1098457970179e-11 hm5C_site_56721 DeepMRMD:0.856199;iRNA_m5C:4.1098457970179e-11 56722 chr19 16060202 16060202 1 + C A BRCA 16060198 + 16060178 16060218 41 TATGATCGCTATGTGGCCATCTGCCACCCACTGCGTTACAA TATGATCGCTATGTGGCCATCTGCAACCCACTGCGTTACAA < 41bp 0.62218351447156 0.904159645434548 0.069912344 0.10744938 prediction 0.563952261925977 Functional Gain - OR10H4 ENSG00000176231 CDS Human protein_coding chr19:16060198 chr19:16060202 nonsynonymous SNV 0.826 0 25 hm5C_associated_SNPs_103577 0 0 0 0 0 unknown 0.500232031682968 0.500232607502071 0 1.15163820413322e-06 hm5C_site_56722 DeepMRMD:0;iRNA_m5C:1.15163820413322e-06 56723 chr2 102446002 102446002 1 + C G SKCM 102446001 + 102445981 102446021 41 CACATTCATCATGTGATTCACCGGGATATCAAGGGCCAGAA CACATTCATCATGTGATTCACGGGGATATCAAGGGCCAGAA < 41bp 0.496616084416124 0.781964852376847 0.7874646 0.9371662 prediction 0.563929704753695 Functional Gain - MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102446001 chr2:102446002 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_103578 0 0 1 0 2 Ribosome 0.50023164392117 0.500231643921092 0.2994032 0 hm5C_site_56723 DeepMRMD:0.2994032;iRNA_m5C:0 56724 chr4 190989459 190989459 1 + C A rs572594088 190989455 + 190989435 190989475 41 GATCGCTTTCCAGGCATCGCCGCCCGGGAGGAGCTGGCCAG GATCGCTTTCCAGGCATCGCCGCCAGGGAGGAGCTGGCCAG < 41bp 0.433268461803175 0.781956574131695 0.1616731 0.5052238 prediction 0.56391314826339 Functional Gain - DBET ENSG00000250537 ncRNA_exonic Human other chr4:190989455 chr4:190989459 . . 0 25 hm5C_associated_SNPs_103579 0 0 0 0 0 unknown 0.500231643921091 0.500231643921092 0.0104476 3.10862446895044e-15 hm5C_site_56724 DeepMRMD:0.0104476;iRNA_m5C:3.10862446895044e-15 56725 chr1 43124576 43124576 1 + T G UCEC 43124574 + 43124554 43124594 41 GTGCCTAAGACGGCCGAGAACTTTAGGTAAGGACGTGCTCC GTGCCTAAGACGGCCGAGAACTGTAGGTAAGGACGTGCTCC < 41bp 0.498786092546308 0.781953989549975 0.3930661 0.3120039 prediction 0.56390797909995 Functional Gain - PPIH ENSG00000171960 CDS Human protein_coding chr1:43124574 chr1:43124576 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103580 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643883347 0 0 hm5C_site_56725 DeepMRMD:0;iRNA_m5C:0 56726 chr1 114442526 114442526 1 + C A UCEC 114442522 + 114442502 114442542 41 GAAGGAAAAGGAGCAGACACCTACCTATGGCAAAGATGGCA GAAGGAAAAGGAGCAGACACCTACATATGGCAAAGATGGCA < 41bp 0.373779217812297 0.78195106094102 0.043630242 0.5871954 prediction 0.563902121882039 Functional Gain - AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114442522 chr1:114442526 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_103581 0 0 0 0 1 chromatin 0.500231643920799 0.500231643393957 0.1743908 0 hm5C_site_56726 DeepMRMD:0.1743908;iRNA_m5C:0 56727 chr8 86356284 86356284 1 + C G OV 86356283 + 86356263 86356303 41 CTTCATTTGGTTCACTGGAACCCGAAGTATAACACTTTTAA CTTCATTTGGTTCACTGGAACGCGAAGTATAACACTTTTAA < 41bp 0.538518786669797 0.820453612335424 0.18530339 0.17209145 prediction 0.563869651331254 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86356283 chr8:86356284 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_103582 0 0 0 0 2 chromatin 0.500231638437576 0.500231643895439 0 1.09157252126124e-08 hm5C_site_56727 DeepMRMD:0;iRNA_m5C:1.09157252126124e-08 56728 chr1 20005822 20005822 1 + C G rs8192534 20005821 + 20005801 20005841 41 CAACATCGACCCCGCGGAGCCCGAGCTGCGGCCGCATCCAC CAACATCGACCCCGCGGAGCCGGAGCTGCGGCCGCATCCAC < 41bp 0.529575614654133 0.811506101331085 0.1662125 0.6617511 prediction 0.563860973353905 Functional Gain - HTR6 ENSG00000158748 CDS Human protein_coding chr1:20005821 chr1:20005822 synonymous SNV . 0 22 hm5C_associated_SNPs_103583 0 0 0 0 0 Cytosol 0.500231645614971 0.500232598403669 0.3235022 1.90557739454533e-06 hm5C_site_56728 DeepMRMD:0.3235022;iRNA_m5C:1.90557739454533e-06 56729 chr12 119943033 119943033 1 + C A COAD 119943029 + 119943009 119943049 41 GATGAGCCCCCAAGTGTGAACACCCAGGTGACCAGCAGCAA GATGAGCCCCCAAGTGTGAACACCAAGGTGACCAGCAGCAA < 41bp 0.365071928748129 0.781911614454333 0.045283288 0.10399455 prediction 0.563823228908666 Functional Gain - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119943029 chr12:119943033 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_103584 0 0 0 0 1 exosome 0.500231643921093 0.500231643920314 0 0 hm5C_site_56729 DeepMRMD:0;iRNA_m5C:0 56730 chr10 125426395 125426395 1 + C A LUAD 125426391 + 125426371 125426411 41 CACCAGCTGTACGCCTCGTGCACGCTGTGCAGCCGGCGGCC CACCAGCTGTACGCCTCGTGCACGATGTGCAGCCGGCGGCC < 41bp 0.610683254712188 0.892580031143316 0.33548748 0.48905146 prediction 0.563793552862256 Functional Gain - GPR26 ENSG00000154478 CDS Human protein_coding chr10:125426391 chr10:125426395 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_103585 0 0 0 0 0 exosome 0.500587882555096 0.500417370605375 0 0 hm5C_site_56730 DeepMRMD:0;iRNA_m5C:0 56731 chr19 48953686 48953686 1 + C A UCEC 48953682 + 48953662 48953702 41 GGAGGAGCCCCAGGCCCTGGCAGCCTTCCTCCGGGATGAGC GGAGGAGCCCCAGGCCCTGGCAGCATTCCTCCGGGATGAGC < 41bp 0.367490407390323 0.781885190314472 0.394257 0.37947342 prediction 0.563770380628944 Functional Gain - GRWD1 ENSG00000105447 CDS Human protein_coding chr19:48953682 chr19:48953686 synonymous SNV . 0 25 hm5C_associated_SNPs_103586 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56731 DeepMRMD:0;iRNA_m5C:0 56732 chr11 66613002 66613002 1 + T G BRCA 66612999 + 66612979 66613019 41 TTCTCCTACACAGCTGTCTTCGGTGCCTACACTGCTTTCCT TTCTCCTACACAGCTGTCTTCGGGGCCTACACTGCTTTCCT < 41bp 0.387826535560512 0.781881099824073 0.59905493 0.9430649 prediction 0.563762199648147 Functional Gain - RCE1 ENSG00000173653 CDS Human protein_coding chr11:66612999 chr11:66613002 synonymous SNV . 0 24 hm5C_associated_SNPs_103587 0 0 1 0 1 Ribosome 0.500231643921127 0.500231643921094 0.68801994 0 hm5C_site_56732 DeepMRMD:0.68801994;iRNA_m5C:0 56733 chr1 152733639 152733639 1 + C G BRCA 152733638 + 152733618 152733658 41 TAGTCCACACCGCCTAGACACCGAAGCTCCCTACTGTGGCC TAGTCCACACCGCCTAGACACGGAAGCTCCCTACTGTGGCC < 41bp 0.542897894914507 0.824755204806311 0.063595176 0.50887084 prediction 0.563714619783608 Functional Gain - KPRP ENSG00000203786 CDS Human protein_coding chr1:152733638 chr1:152733639 synonymous SNV . 0 22 hm5C_associated_SNPs_103588 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0.0177416800000001 0 hm5C_site_56733 DeepMRMD:0.0177416800000001;iRNA_m5C:0 56734 chr19 15757912 15757912 1 + C A COAD 15757908 + 15757888 15757928 41 TTCTACAGCTTCCTGAAGCCCTGGCTGGGTGAGTATCTGTA TTCTACAGCTTCCTGAAGCCCTGGATGGGTGAGTATCTGTA < 41bp 0.458499044414656 0.781853558821505 0.025313467 0.09152159 prediction 0.563707117643011 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15757908 chr19:15757912 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_103589 0 0 1 0 2 exosome 0.500231643921093 0.500231643921079 0 0 hm5C_site_56734 DeepMRMD:0;iRNA_m5C:0 56735 chr1 1961533 1961533 1 + T A LUAD 1961529 + 1961509 1961549 41 GTCCCGGGGAACCTGATGGGCTCCTACAGGTCGGTGGGGGT GTCCCGGGGAACCTGATGGGCTCCAACAGGTCGGTGGGGGT < 41bp 0.46172379963191 0.781843514004006 0.042353004 0.89132273 prediction 0.563687028008012 Functional Gain - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961529 chr1:1961533 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_103590 0 0 1 0 0 Cytosol 0.500225602450715 0.500231217882794 0.78264546 1.123086415733e-05 hm5C_site_56735 DeepMRMD:0.78264546;iRNA_m5C:1.123086415733e-05 56736 chr1 203452418 203452418 1 + C A rs138509179 203452414 + 203452394 203452434 41 CCCGGGACTGGGCCCGGGCGCAGACCCAGGCCCAGGCCCAG CCCGGGACTGGGCCCGGGCGCAGAACCAGGCCCAGGCCCAG < 41bp 0.611518335488323 0.893361750619522 0.33551192 0.3351653 prediction 0.563686830262399 Functional Gain - PRELP ENSG00000188783 CDS Human protein_coding chr1:203452414 chr1:203452418 nonsynonymous SNV 0.311 1 25 hm5C_associated_SNPs_103591 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56736 DeepMRMD:0;iRNA_m5C:0 56737 chr4 155665617 155665617 1 + C G HNSC 155665616 + 155665596 155665636 41 TATGAAACCAGCTCTTTCCACCGAGGCGACGTGCTGGAGGT TATGAAACCAGCTCTTTCCACGGAGGCGACGTGCTGGAGGT < 41bp 0.518792115174374 0.800627363193518 0.7831106 0.9094548 prediction 0.563670496038287 Functional Gain - LRAT ENSG00000121207 CDS Human protein_coding chr4:155665616 chr4:155665617 nonsynonymous SNV 0.918 4 22 hm5C_associated_SNPs_103592 0 0 0 0 0 Nucleus 0.500231643780374 0.500231643921093 0.2526884 2.81437539939589e-10 hm5C_site_56737 DeepMRMD:0.2526884;iRNA_m5C:2.81437539939589e-10 56738 chr10 24790396 24790396 1 + C A LUSC 24790392 + 24790372 24790412 41 GCCTCCACCTGTGGGCACCTCAGCCATCCACATGAGCCTGC GCCTCCACCTGTGGGCACCTCAGCAATCCACATGAGCCTGC < 41bp 0.433130288929854 0.781815009546583 0.14179847 0.13910279 prediction 0.563630019093166 Functional Gain - KIAA1217 ENSG00000120549 CDS Human protein_coding chr10:24790392 chr10:24790396 synonymous SNV . 0 25 hm5C_associated_SNPs_103593 0 0 1 0 2 Nucleus 0.500232105200085 0.500231644961423 0 0 hm5C_site_56738 DeepMRMD:0;iRNA_m5C:0 56739 chr1 45808095 45808095 1 + C G KIRP 45808094 + 45808074 45808114 41 CAGTCAGTACGGACCCTATTCCTGGAGCTAATCCGAGCCCG CAGTCAGTACGGACCCTATTCGTGGAGCTAATCCGAGCCCG < 41bp 0.478344598000704 0.781808340145296 0.22758898 0.37750965 prediction 0.563616680290592 Functional Gain - TOE1 ENSG00000132773 CDS Human protein_coding chr1:45808094 chr1:45808095 nonsynonymous SNV 0.966 1 22 hm5C_associated_SNPs_103594 0 0 1 0 0 Ribosome 0.500231643799711 0.500231643890214 0 1.81006765131997e-10 hm5C_site_56739 DeepMRMD:0;iRNA_m5C:1.81006765131997e-10 56740 chr1 29446108 29446108 1 + C A rs546641721 29446104 + 29446084 29446124 41 CCGTGACCCATCCCCGTCCCCACCCCCCCCTCCACCGCTGG CCGTGACCCATCCCCGTCCCCACCACCCCCTCCACCGCTGG < 41bp 0.479992716480676 0.781802792707694 0.015569836 0.020712376 prediction 0.563605585415388 Functional Gain - EPB41;TMEM200B ENSG00000159023;ENSG00000253304 UTR3 Human other chr1:29446104 chr1:29446108 . . 0 25 hm5C_associated_SNPs_103595 0 0 0 0 0 unknown 0.500231643946527 0.500231643921092 0 0 hm5C_site_56740 DeepMRMD:0;iRNA_m5C:0 56741 chr12 118456893 118456893 1 + C A HNSC 118456889 + 118456869 118456909 41 TATTTCAGGGTTGAAAAATACCGGCCACAGACCCTGAATGA TATTTCAGGGTTGAAAAATACCGGACACAGACCCTGAATGA < 41bp 0.396225573906396 0.781800023776032 0.21053645 0.2916484 prediction 0.563600047552063 Functional Gain - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118456889 chr12:118456893 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_103596 0 0 1 0 1 Ribosome 0.500231626551614 0.500231643915327 0 3.47274264900221e-08 hm5C_site_56741 DeepMRMD:0;iRNA_m5C:3.47274264900221e-08 56742 chr2 130940017 130940017 1 + C A rs201954757 130940013 + 130939993 130940033 41 GGCGGGCGGCGCTATCGACCCCGACGTGTTCAAGTGAGCGG GGCGGGCGGCGCTATCGACCCCGAAGTGTTCAAGTGAGCGG < 41bp 0.421970951388093 0.781792189112643 0.032125443 0.20881191 prediction 0.563584378225286 Functional Gain - MZT2B ENSG00000152082 CDS Human protein_coding chr2:130940013 chr2:130940017 nonsynonymous SNV 0.816 1 25 hm5C_associated_SNPs_103597 0 0 1 0 1 Ribosome 0.500231643921096 0.500231643921092 0 0 hm5C_site_56742 DeepMRMD:0;iRNA_m5C:0 56743 chr9 82323627 82323627 1 + C G OV 82323626 + 82323606 82323646 41 GGAGCGGCCTACGCTGGGCTCCACAACATCTCCCCTCAGAT GGAGCGGCCTACGCTGGGCTCGACAACATCTCCCCTCAGAT < 41bp 0.520863729250178 0.802654094767544 0.106232256 0.051163465 prediction 0.563580731034732 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323626 chr9:82323627 nonsynonymous SNV 0.867 4 22 hm5C_associated_SNPs_103598 0 0 0 0 1 Endoplasmic reticulum 0.500231643906103 0.500231645050645 0 2.28908536570316e-09 hm5C_site_56743 DeepMRMD:0;iRNA_m5C:2.28908536570316e-09 56744 chr19 56569695 56569695 1 + T A ACC 56569691 + 56569671 56569711 41 GGCATCTGACCAGTCTAAACCTGGTGCAGAATAACTTCAGT GGCATCTGACCAGTCTAAACCTGGAGCAGAATAACTTCAGT < 41bp 0.54296289007971 0.824746002424279 0.6938228 0.7334592 prediction 0.563566224689138 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56569691 chr19:56569695 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_103599 0 0 0 0 2 unknown 0.500230527662212 0.50023147811172 0.0792728 1.9008990159719e-06 hm5C_site_56744 DeepMRMD:0.0792728;iRNA_m5C:1.9008990159719e-06 56745 chr11 55111250 55111250 1 + T A HNSC 55111246 + 55111226 55111266 41 GAACTGTTGTGCCTTGACACCTACTTTATAGGACTCACTGT GAACTGTTGTGCCTTGACACCTACATTATAGGACTCACTGT < 41bp 0.537232671197615 0.819013097753178 0.23115239 0.8913357 prediction 0.563560853111127 Functional Gain - OR4A16 ENSG00000181961 CDS Human protein_coding chr11:55111246 chr11:55111250 nonsynonymous SNV 0.295 0 25 hm5C_associated_SNPs_103600 0 0 0 0 0 unknown 0.500231633261142 0.500231626552291 0.7826714 0 hm5C_site_56745 DeepMRMD:0.7826714;iRNA_m5C:0 56746 chr1 248059168 248059168 1 + T A OV 248059164 + 248059144 248059184 41 AATGGATGTGACAAGACCATCAGCTACATGGGCTGTGCCAT AATGGATGTGACAAGACCATCAGCAACATGGGCTGTGCCAT < 41bp 0.528320809918599 0.810100792773778 0.25085184 0.3210136 prediction 0.563559965710358 Functional Gain - OR2W3 ENSG00000238243 CDS Human protein_coding chr1:248059164 chr1:248059168 nonsynonymous SNV 0.859 2 25 hm5C_associated_SNPs_103601 0 0 0 0 0 exosome 0.500231643921093 0.500231643921152 0 1.19459997449667e-13 hm5C_site_56746 DeepMRMD:0;iRNA_m5C:1.19459997449667e-13 56747 chr1 162326913 162326913 1 + T A SKCM 162326909 + 162326889 162326929 41 AGCAGCAGCAGCAGCAGACACAAGTGGCTGTGGCCCAGGTT AGCAGCAGCAGCAGCAGACACAAGAGGCTGTGGCCCAGGTT < 41bp 0.506175613275324 0.787947557246919 0.177338 0.2993852 prediction 0.563543887943191 Functional Gain - NOS1AP ENSG00000198929 CDS Human protein_coding chr1:162326909 chr1:162326913 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103602 0 0 1 0 1 cytosol 0.500231643921089 0.500231643921092 0 7.32747196252603e-15 hm5C_site_56747 DeepMRMD:0;iRNA_m5C:7.32747196252603e-15 56748 chr16 3535505 3535505 1 + C G rs73489662 3535501 + 3535481 3535521 41 CTCCCTGCTTCTGGAAACCTCTGCCTGCTGCCCTGGCCCTG CTCCCTGCTTCTGGAAACCTCTGCGTGCTGCCCTGGCCCTG < 41bp 0.498197623971053 0.781765256418521 0.12938479 0.14559007 prediction 0.563530512837041 Functional Gain - NAA60 ENSG00000263212 ncRNA_intronic Human processed_transcript chr16:3535501 chr16:3535505 . . 0 25 hm5C_associated_SNPs_103603 0 0 1 0 1 chromatin 0.500231643921092 0.50023164392342 0 4.65449900843851e-12 hm5C_site_56748 DeepMRMD:0;iRNA_m5C:4.65449900843851e-12 56749 chr6 43484884 43484884 1 + C G PRAD 43484883 + 43484863 43484903 41 GCGGTGGAGGAAATGCGGAGCCGCGTGGTTCTGGGGGAGTT GCGGTGGAGGAAATGCGGAGCGGCGTGGTTCTGGGGGAGTT < 41bp 0.530507618668098 0.812266813369472 0.63325316 0.8666673 prediction 0.563518389402749 Functional Gain - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43484883 chr6:43484884 nonsynonymous SNV 0.960 3 22 hm5C_associated_SNPs_103604 0 0 1 0 1 Ribosome 0.500231644601085 0.500231643929951 0.46682828 0 hm5C_site_56749 DeepMRMD:0.46682828;iRNA_m5C:0 56750 chr17 7340140 7340140 1 + T G SKCM 7340137 + 7340117 7340157 41 GCTGGCGGCGGTCGCCGAGTCTCTGATCCCTGTCCCGGGTG GCTGGCGGCGGTCGCCGAGTCTCGGATCCCTGTCCCGGGTG < 41bp 0.616530900763104 0.898285644360524 0.26226997 0.80454075 prediction 0.56350948719484 Functional Gain - TMEM102 ENSG00000181284 CDS Human protein_coding chr17:7340137 chr17:7340140 nonsynonymous SNV 0.323 1 24 hm5C_associated_SNPs_103605 0 0 0 0 0 exosome 0.500231643915723 0.500215279174844 0.6090815 0 hm5C_site_56750 DeepMRMD:0.6090815;iRNA_m5C:0 56751 chr20 35060836 35060836 1 + C A LUAD 35060832 + 35060812 35060852 41 GCCGCCAGGCAGAACGCAGCCAGCCACGCTACTTCATGCAC GCCGCCAGGCAGAACGCAGCCAGCAACGCTACTTCATGCAC < 41bp 0.361919464584748 0.781746117637668 0.059170187 0.09257108 prediction 0.563492235275336 Functional Gain - DLGAP4 ENSG00000080845 CDS Human protein_coding chr20:35060832 chr20:35060836 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_103606 0 0 1 0 0 Cytosol 0.500231643921581 0.500231775648532 0 2.63453902693556e-07 hm5C_site_56751 DeepMRMD:0;iRNA_m5C:2.63453902693556e-07 56752 chr3 141497304 141497304 1 + T G BLCA 141497301 + 141497281 141497321 41 TGTCCCTGAACTTCCACAGCCTGTGTGAGCAGCAGCCCATC TGTCCCTGAACTTCCACAGCCTGGGTGAGCAGCAGCCCATC < 41bp 0.623549127585808 0.905291653671885 0.17611942 0.68565 prediction 0.563485052172154 Functional Gain - GRK7 ENSG00000114124 CDS Human protein_coding chr3:141497301 chr3:141497304 nonsynonymous SNV 0.975 4 24 hm5C_associated_SNPs_103607 0 0 0 0 0 exosome 0.500147769851367 0.500506256678584 0.3713 0.000716973654435238 hm5C_site_56752 DeepMRMD:0.3713;iRNA_m5C:0.000716973654435238 56753 chr1 52705135 52705135 1 + C G rs142234365 52705134 + 52705114 52705154 41 TGGTCAGTTTGGAATTTCTGCCAGAAAGCCATTCACCACTC TGGTCAGTTTGGAATTTCTGCGAGAAAGCCATTCACCACTC < 41bp 0.49837784231289 0.781738877735519 0.09019035 0.7958662 prediction 0.563477755471038 Functional Gain - ZFYVE9 ENSG00000157077 CDS Human protein_coding chr1:52705134 chr1:52705135 synonymous SNV . 0 22 hm5C_associated_SNPs_103608 0 0 1 0 0 Ribosome 0.500231641413688 0.500177611828069 0.5917324 0 hm5C_site_56753 DeepMRMD:0.5917324;iRNA_m5C:0 56754 chr11 67186278 67186278 1 + C G LUSC 67186277 + 67186257 67186297 41 GGCTGATGAAGGTGCCAGCACCCGGGCAGCCGGGTGAGGCA GGCTGATGAAGGTGCCAGCACGCGGGCAGCCGGGTGAGGCA < 41bp 0.543600477025722 0.825329885285315 0.35853553 0.6929924 prediction 0.563458816519187 Functional Gain - CARNS1 ENSG00000172508 CDS Human protein_coding chr11:67186277 chr11:67186278 nonsynonymous SNV 0.816 1 22 hm5C_associated_SNPs_103609 0 0 0 0 1 exosome 0.500231643921091 0.500231643900699 0.3859848 0 hm5C_site_56754 DeepMRMD:0.3859848;iRNA_m5C:0 56755 chrX 37027867 37027867 1 + C A COAD 37027863 + 37027843 37027883 41 CCTCCCAAGACTCGGGTGTCCAGTCTCCACCTGGAGCCTCC CCTCCCAAGACTCGGGTGTCCAGTATCCACCTGGAGCCTCC < 41bp 0.401729777872328 0.781723805984457 0.2145817 0.300788 prediction 0.563447611968914 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37027863 chrX:37027867 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_103610 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0 0 hm5C_site_56755 DeepMRMD:0;iRNA_m5C:0 56756 chr1 241912929 241912929 1 + C G rs200339413 241912925 + 241912905 241912945 41 GGGAAAGACTGGAAGGAGGACGAGCACTGCCTACGACGCCT GGGAAAGACTGGAAGGAGGACGAGGACTGCCTACGACGCCT < 41bp 0.494619880864976 0.781715979810061 0.32199278 0.58947545 prediction 0.563431959620123 Functional Gain - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241912925 chr1:241912929 nonsynonymous SNV 0.052 2 25 hm5C_associated_SNPs_103611 0 0 0 0 2 cytosol 0.500231643921092 0.500231643921092 0.1789509 0 hm5C_site_56756 DeepMRMD:0.1789509;iRNA_m5C:0 56757 chr11 116703588 116703588 1 + C A LUSC 116703584 + 116703564 116703604 41 CCCTGAGGTCAGACCAACTTCAGCCGTGGCTGCCTGAGACC CCCTGAGGTCAGACCAACTTCAGCAGTGGCTGCCTGAGACC < 41bp 0.621092402029161 0.902795802130947 0.38238165 0.43561482 prediction 0.56340680020357 Functional Gain - APOC3 ENSG00000110245 CDS Human protein_coding chr11:116703584 chr11:116703588 synonymous SNV . 0 25 hm5C_associated_SNPs_103612 0 0 1 0 0 exosome 0.500231643622573 0.500231644638859 0 2.03257299880022e-09 hm5C_site_56757 DeepMRMD:0;iRNA_m5C:2.03257299880022e-09 56758 chr6 36982747 36982747 1 + T A STAD 36982743 + 36982723 36982763 41 TAGTAGACCCCTCTAACACCCTGCTCCGTGAGGGCCCGGTC TAGTAGACCCCTCTAACACCCTGCACCGTGAGGGCCCGGTC < 41bp 0.563395351639535 0.845083306922121 0.08366743 0.09861335 prediction 0.563375910565172 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36982743 chr6:36982747 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_103613 0 0 0 0 1 Endoplasmic reticulum 0.500231643921142 0.500231644001963 0 1.61640922868855e-10 hm5C_site_56758 DeepMRMD:0;iRNA_m5C:1.61640922868855e-10 56759 chr9 113449410 113449410 1 + C G SKCM 113449409 + 113449389 113449429 41 ACCTGCAGACTCTTTGACACCCGGTACAGCATCCGGGAGAA ACCTGCAGACTCTTTGACACCGGGTACAGCATCCGGGAGAA < 41bp 0.47858865186131 0.78167697353357 0.45128676 0.8593136 prediction 0.563353947067139 Functional Gain - MUSK ENSG00000030304 CDS Human protein_coding chr9:113449409 chr9:113449410 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_103614 0 0 0 0 1 exosome 0.500231671198324 0.500231643922083 0.7186272 0 hm5C_site_56759 DeepMRMD:0.7186272;iRNA_m5C:0 56760 chr17 21909479 21909479 1 + C G LUAD 21909478 + 21909458 21909498 41 GCCCCACGGTAGCACATTGTCCGGCAGGAGAGGAGCAGACC GCCCCACGGTAGCACATTGTCGGGCAGGAGAGGAGCAGACC < 41bp 0.510590293237973 0.792244735443427 0.7970056 0.9255848 prediction 0.563308884410909 Functional Gain - FLJ36000 ENSG00000266795 ncRNA_exonic Human other chr17:21909478 chr17:21909479 . . 0 22 hm5C_associated_SNPs_103615 0 0 0 0 1 unknown 0.500231629917891 0.500231652284376 0.2571584 4.47329708830324e-08 hm5C_site_56760 DeepMRMD:0.2571584;iRNA_m5C:4.47329708830324e-08 56761 chr16 84812561 84812561 1 + T A COAD 84812557 + 84812537 84812577 41 ATTACACTACAGACGTCTTCCAGATCGGTCTGAATGGCTGG ATTACACTACAGACGTCTTCCAGAACGGTCTGAATGGCTGG < 41bp 0.530864266116074 0.812499633062683 0.113175064 0.057456344 prediction 0.563270733893218 Functional Gain - USP10 ENSG00000103194 CDS Human protein_coding chr16:84812557 chr16:84812561 nonsynonymous SNV 0.983 3 25 hm5C_associated_SNPs_103616 0 0 1 0 1 Cytosol 0.500231621690861 0.50023166207476 0 8.07677968950316e-08 hm5C_site_56761 DeepMRMD:0;iRNA_m5C:8.07677968950316e-08 56762 chr11 43877569 43877569 1 + C A rs533617306 43877565 + 43877545 43877585 41 ACCCTGACCCAGAAAAGTGGCTTGCTTGGACACCCAGCTGC ACCCTGACCCAGAAAAGTGGCTTGATTGGACACCCAGCTGC < 41bp 0.439588271995579 0.781618277741218 0.26730305 0.2692598 prediction 0.563236555482437 Functional Gain - HSD17B12 ENSG00000246250 ncRNA_intronic Human antisense chr11:43877565 chr11:43877569 . . 0 25 hm5C_associated_SNPs_103617 0 0 1 0 0 Ribosome 0.50023164392031 0.500231644190315 0 5.40008704419392e-10 hm5C_site_56762 DeepMRMD:0;iRNA_m5C:5.40008704419392e-10 56763 chr1 248201892 248201892 1 + T G rs73141397 248201889 + 248201869 248201909 41 TTTCTTCTTCTTGACTTTAGCAGTTGCAGAAGGGCTGCTCC TTTCTTCTTCTTGACTTTAGCAGGTGCAGAAGGGCTGCTCC < 41bp 0.398518210180842 0.78161793597188 0.31694305 0.91223705 prediction 0.56323587194376 Functional Gain - OR2L2 ENSG00000203663 CDS Human protein_coding chr1:248201889 chr1:248201892 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_103618 0 0 0 0 0 exosome 0.50023164339281 0.500231369441756 0.8244741 0 hm5C_site_56763 DeepMRMD:0.8244741;iRNA_m5C:0 56764 chr7 139655310 139655310 1 + C G rs138612126 139655306 + 139655286 139655326 41 GTTGCCAGCGTCGCCTTTGGCACCCCGGTGGACTCCTGGCA GTTGCCAGCGTCGCCTTTGGCACCGCGGTGGACTCCTGGCA < 41bp 0.505900308793768 0.787515898359 0.2496281 0.7034358 prediction 0.563231179130465 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139655306 chr7:139655310 nonsynonymous SNV 0.813 0 25 hm5C_associated_SNPs_103619 0 0 0 0 2 Endoplasmic reticulum 0.500231643921093 0.500231632112137 0.4068716 0 hm5C_site_56764 DeepMRMD:0.4068716;iRNA_m5C:0 56765 chr15 31234895 31234895 1 + A C rs3751643 31234898 - 31234878 31234918 41 GTCTGAGGCCCACAAAGTCTCAGTACCTGAGAGTGGGCAGA GTCTGAGGCCCACAAAGTCTCAGGACCTGAGAGTGGGCAGA < 41bp 0.415058542870105 0.781607350912053 0.7748269 0.92434967 prediction 0.563214701824106 Functional Gain - FAN1 ENSG00000166912;ENSG00000198690 UTR3 Human other chr15:31234898 chr15:31234895 . . 0 24 hm5C_associated_SNPs_103620 0 0 0 0 0 Cytosol 0.500232043852489 0.500231643921093 0.29904554 0 hm5C_site_56765 DeepMRMD:0.29904554;iRNA_m5C:0 56766 chr11 69466115 69466115 1 + C A rs7177 69466111 + 69466091 69466131 41 GGCGGAGCCGGCCCCAGGTGCTCCCCTGACAGTCCCTCCTC GGCGGAGCCGGCCCCAGGTGCTCCACTGACAGTCCCTCCTC < 41bp 0.621888164537088 0.903492744590485 0.030739218 0.45872563 prediction 0.563209160106793 Functional Gain - CCND1 ENSG00000110092 UTR3 Human protein_coding chr11:69466111 chr11:69466115 . . 0 25 hm5C_associated_SNPs_103621 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921107 0 2.93098878501041e-14 hm5C_site_56766 DeepMRMD:0;iRNA_m5C:2.93098878501041e-14 56767 chr10 102826237 102826237 1 + C A rs576643418 102826233 + 102826213 102826253 41 AAGCGGGCGGCCCTAGGAGCCGCGCACAACAGCGCAAGCGG AAGCGGGCGGCCCTAGGAGCCGCGAACAACAGCGCAAGCGG < 41bp 0.588902632817974 0.870501857321775 0.40524998 0.6409736 prediction 0.563198449007602 Functional Gain - KAZALD1 ENSG00000107821 downstream Human protein_coding chr10:102826233 chr10:102826237 . . 0 25 hm5C_associated_SNPs_103622 0 0 0 0 1 nucleus 0.500231643438849 0.500231643789774 0.2819472 7.01850577655705e-10 hm5C_site_56767 DeepMRMD:0.2819472;iRNA_m5C:7.01850577655705e-10 56768 chr7 6057570 6057570 1 + C G rs545201082 6057569 + 6057549 6057589 41 GTCCACGGTGCACACGCACTCCTCGGTCAAGAGCGTGCCTG GTCCACGGTGCACACGCACTCGTCGGTCAAGAGCGTGCCTG < 41bp 0.475329068527339 0.781582473777927 0.052149802 0.71288574 prediction 0.563164947555854 Functional Gain - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6057569 chr7:6057570 synonymous SNV . 0 22 hm5C_associated_SNPs_103623 0 0 1 0 0 Ribosome 0.500229117081746 0.500200236774357 0.42577148 0 hm5C_site_56768 DeepMRMD:0.42577148;iRNA_m5C:0 56769 chr5 131630361 131630361 1 + C G HNSC 131630360 + 131630340 131630380 41 CTGGGCGAGTGGGGGCCCTTCCAGCGCCTCATCTTCTTCCT CTGGGCGAGTGGGGGCCCTTCGAGCGCCTCATCTTCTTCCT < 41bp 0.475084582534957 0.781551836478748 0.8502978 0.8828037 prediction 0.563103672957495 Functional Gain - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131630360 chr5:131630361 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_103624 0 0 0 0 0 Endoplasmic reticulum 0.500231643921098 0.500231643921092 0.0650118 0 hm5C_site_56769 DeepMRMD:0.0650118;iRNA_m5C:0 56770 chr7 2473256 2473256 1 + C A UCEC 2473252 + 2473232 2473272 41 GAGCACTGGCGGCAGGTGTACCGCCTCTGCCACCCGTGCCA GAGCACTGGCGGCAGGTGTACCGCATCTGCCACCCGTGCCA < 41bp 0.386080073254563 0.781536601158685 0.24797705 0.28796798 prediction 0.563073202317369 Functional Gain - CHST12 ENSG00000136213 CDS Human protein_coding chr7:2473252 chr7:2473256 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103625 0 0 1 0 0 nucleolus 0.500230283972486 0.500231643921312 0 2.71989765132652e-06 hm5C_site_56770 DeepMRMD:0;iRNA_m5C:2.71989765132652e-06 56771 chr21 45858978 45858978 1 + C A UCEC 45858974 + 45858954 45858994 41 CCCGGGAGCCAGGGGAGATGCTACCTCGGAAGCTGAAGCGG CCCGGGAGCCAGGGGAGATGCTACATCGGAAGCTGAAGCGG < 41bp 0.367980249647295 0.781536553022542 0.87312615 0.93475604 prediction 0.563073106045083 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45858974 chr21:45858978 nonsynonymous SNV 0.762 4 25 hm5C_associated_SNPs_103626 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643921092 0.12325978 0 hm5C_site_56771 DeepMRMD:0.12325978;iRNA_m5C:0 56772 chr21 46057896 46057896 1 + T A LUAD 46057892 + 46057872 46057912 41 ACCGCCTCCTGCTGCAGACCCTCCTCCTCCGTGTCCCTCCT ACCGCCTCCTGCTGCAGACCCTCCACCTCCGTGTCCCTCCT < 41bp 0.455761669589227 0.781535285237639 0.037769586 0.95193684 prediction 0.563070570475279 Functional Gain - KRTAP10-10 ENSG00000221859 CDS Human protein_coding chr21:46057892 chr21:46057896 nonsynonymous SNV 0.336 3 25 hm5C_associated_SNPs_103627 0 0 0 0 0 unknown 0.500231643921093 0.500231643921096 0.90387368 7.54951656745106e-15 hm5C_site_56772 DeepMRMD:0.90387368;iRNA_m5C:7.54951656745106e-15 56773 chrX 140995179 140995179 1 + T G STAD 140995177 + 140995157 140995197 41 TCCAGTCTCCTCTCCATAGTCCTCAGAGCCCTCCTGAGGGG TCCAGTCTCCTCTCCATAGTCCGCAGAGCCCTCCTGAGGGG < 41bp 0.449393603521566 0.781532098937223 0.19633895 0.28597382 prediction 0.563064197874446 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140995177 chrX:140995179 synonymous SNV . 0 23 hm5C_associated_SNPs_103628 0 0 0 0 0 exosome 0.500230406000792 0.500183883534256 0 0 hm5C_site_56773 DeepMRMD:0;iRNA_m5C:0 56774 chr3 13679197 13679197 1 + C A GBM 13679193 + 13679173 13679213 41 CTTCCGCATTGGCCCCGCGCCAGCCTTCACGGGGGACACCA CTTCCGCATTGGCCCCGCGCCAGCATTCACGGGGGACACCA < 41bp 0.376491384324173 0.781528389372375 0.20974031 0.21133992 prediction 0.563056778744749 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13679193 chr3:13679197 synonymous SNV . 0 25 hm5C_associated_SNPs_103629 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_56774 DeepMRMD:0;iRNA_m5C:0 56775 chr16 20911758 20911758 1 + C A rs192628920 20911754 + 20911734 20911774 41 CATCATCACTTCCGGTAACCCCGCCGGCCGCCAGCTCCAGG CATCATCACTTCCGGTAACCCCGCAGGCCGCCAGCTCCAGG < 41bp 0.606836105799617 0.888356879590918 0.2779073 0.1628195 prediction 0.563041547582603 Functional Gain - LYRM1 ENSG00000102897 UTR5 Human protein_coding chr16:20911754 chr16:20911758 . . 0 25 hm5C_associated_SNPs_103630 0 0 0 0 1 Ribosome 0.50023164392113 0.500231643921093 0 0 hm5C_site_56775 DeepMRMD:0;iRNA_m5C:0 56776 chr11 56020319 56020319 1 + T A STAD 56020315 + 56020295 56020335 41 TCTTTTGTGATATGCCTCCTCTCCTTGCTATTTCTTGTTCT TCTTTTGTGATATGCCTCCTCTCCATGCTATTTCTTGTTCT < 41bp 0.470632197179982 0.781509302546405 0.28460398 0.95687866 prediction 0.56301860509281 Functional Gain - OR5T3 ENSG00000172489 CDS Human protein_coding chr11:56020315 chr11:56020319 nonsynonymous SNV 0.812 3 25 hm5C_associated_SNPs_103631 0 0 0 0 0 unknown 0.500231643920844 0.500231643921088 0.91375732 4.89164264649844e-13 hm5C_site_56776 DeepMRMD:0.91375732;iRNA_m5C:4.89164264649844e-13 56777 chr6 26022200 26022200 1 + T G CESC 26022198 + 26022178 26022218 41 TTAAGCGCCAGGGACGCACCCTTTATGGCTTTGGCGGTTAA TTAAGCGCCAGGGACGCACCCTGTATGGCTTTGGCGGTTAA < 41bp 0.477869403472367 0.781507781096221 0.04522845 0.05840242 prediction 0.563015562192443 Functional Gain - HIST1H4A ENSG00000196176 CDS Human other chr6:26022198 chr6:26022200 synonymous SNV . 0 23 hm5C_associated_SNPs_103632 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56777 DeepMRMD:0;iRNA_m5C:0 56778 chr19 19168318 19168318 1 + C A BRCA 19168314 + 19168294 19168334 41 CTGGGGGCTGAGGCACTCATCATGCAGGCCCGATCTGCCCA CTGGGGGCTGAGGCACTCATCATGAAGGCCCGATCTGCCCA < 41bp 0.615188149077061 0.89669063424129 0.2513091 0.38656664 prediction 0.563004970328458 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19168314 chr19:19168318 nonsynonymous SNV 0.017 0 25 hm5C_associated_SNPs_103633 0 0 1 0 1 Ribosome 0.50023164392096 0.500231643618507 0 0 hm5C_site_56778 DeepMRMD:0;iRNA_m5C:0 56779 chr12 101436184 101436184 1 + T A LUSC 101436180 + 101436160 101436200 41 GTACACCGGCATGCTCTTCCCAGCTGCCTTCATTGGATTGT GTACACCGGCATGCTCTTCCCAGCAGCCTTCATTGGATTGT < 41bp 0.472338304456818 0.781496459153532 0.5667995 0.574413 prediction 0.562992918307065 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101436180 chr12:101436184 synonymous SNV . 0 25 hm5C_associated_SNPs_103634 0 0 0 0 2 exosome 0.500231643921002 0.500231643921026 0.0152269999999999 4.84057238736568e-14 hm5C_site_56779 DeepMRMD:0.0152269999999999;iRNA_m5C:4.84057238736568e-14 56780 chr4 30722099 30722099 1 + T G rs375045514 30722096 + 30722076 30722116 41 ACCCAAACTTGGGCACCGCACGGTGCGCACTGCTCAGCCTT ACCCAAACTTGGGCACCGCACGGGGCGCACTGCTCAGCCTT < 41bp 0.419238952871307 0.78148712469192 0.4312782 0.9512987 prediction 0.56297424938384 Functional Gain - PCDH7 ENSG00000169851 UTR5 Human protein_coding chr4:30722096 chr4:30722099 . . 0 24 hm5C_associated_SNPs_103635 0 0 1 0 0 Ribosome 0.500231643920873 0.500231643918101 0.9025974 0 hm5C_site_56780 DeepMRMD:0.9025974;iRNA_m5C:0 56781 chr3 45942482 45942482 1 + C A PAAD 45942478 + 45942458 45942498 41 ATCGTGGGTGCCTTGGGCAACAGTCTTGTTATCCTTGTCTA ATCGTGGGTGCCTTGGGCAACAGTATTGTTATCCTTGTCTA < 41bp 0.387514027218207 0.781485190415983 0.20030707 0.27888006 prediction 0.562970380831965 Functional Gain - CCR9 ENSG00000173585 CDS Human protein_coding chr3:45942478 chr3:45942482 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_103636 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_56781 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 56782 chr1 9787519 9787519 1 + C G rs531510973 9787515 + 9787495 9787535 41 CGACAGGATGCCTTGATCCTCGTGCGACCCACCCTGTGTAT CGACAGGATGCCTTGATCCTCGTGGGACCCACCCTGTGTAT < 41bp 0.505317662897847 0.786771071291538 0.26812243 0.55995065 prediction 0.562906816787381 Functional Gain - PIK3CD ENSG00000171608 UTR3 Human protein_coding chr1:9787515 chr1:9787519 . . 0 25 hm5C_associated_SNPs_103637 0 0 1 0 0 Nucleus 0.500231643921001 0.500231643921093 0.1199013 1.83408843668076e-13 hm5C_site_56782 DeepMRMD:0.1199013;iRNA_m5C:1.83408843668076e-13 56783 chr21 45826547 45826547 1 + C A GBM 45826543 + 45826523 45826563 41 TGTCCTTCGGGGTGGCCAAGCAGGCCATCCTCATCCACAAC TGTCCTTCGGGGTGGCCAAGCAGGACATCCTCATCCACAAC < 41bp 0.614525286078753 0.895971858898983 0.8136578 0.7769923 prediction 0.56289314564046 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45826543 chr21:45826547 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103638 0 0 0 0 1 Ribosome 0.500231657015569 0.500227761948262 0 0 hm5C_site_56783 DeepMRMD:0;iRNA_m5C:0 56784 chr1 15766823 15766823 1 + C G rs533967597 15766822 + 15766802 15766842 41 GCTGTGGGGTGCCCAGCTTCCCGCCCAACCTATCCGCCCGA GCTGTGGGGTGCCCAGCTTCCGGCCCAACCTATCCGCCCGA < 41bp 0.53464138480221 0.816084309191802 0.14276528 0.39870924 prediction 0.562885848779182 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15766822 chr1:15766823 nonsynonymous SNV 0.360 1 22 hm5C_associated_SNPs_103639 0 0 0 0 2 exosome 0.500231643922116 0.500231643921091 0 0 hm5C_site_56784 DeepMRMD:0;iRNA_m5C:0 56785 chr5 169025560 169025560 1 + T G OV 169025558 + 169025538 169025578 41 ACACCTATTATACAGATTTACTTCAGATGAAGCTGGATAAC ACACCTATTATACAGATTTACTGCAGATGAAGCTGGATAAC < 41bp 0.546237830790503 0.827655279761013 0.07819641 0.113161 prediction 0.562834897941021 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169025558 chr5:169025560 synonymous SNV . 0 23 hm5C_associated_SNPs_103640 0 0 1 0 2 chromatin 0.499743055918388 0.500230043682579 0 0.000460087365157236 hm5C_site_56785 DeepMRMD:0;iRNA_m5C:0.000460087365157236 56786 chr20 4705274 4705274 1 + C A rs41279424 4705270 + 4705250 4705290 41 TCAGCCACCTCTCTGCGGTCCAGACGAGGGGCATCAAGCAC TCAGCCACCTCTCTGCGGTCCAGAAGAGGGGCATCAAGCAC < 41bp 0.615201940449818 0.896616228337637 0.28729945 0.34944648 prediction 0.562828575775639 Functional Gain - PRND ENSG00000171864 CDS Human protein_coding chr20:4705270 chr20:4705274 nonsynonymous SNV 0.027 2 25 hm5C_associated_SNPs_103641 0 0 0 0 1 Nucleus 0.500231643921178 0.500231643921094 0 0 hm5C_site_56786 DeepMRMD:0;iRNA_m5C:0 56787 chr10 79687701 79687701 1 + T G rs78485346 79687698 + 79687678 79687718 41 ACGTTGGAATGAGTGGATCTCGCTGGGGGTGAGAGGCACTT ACGTTGGAATGAGTGGATCTCGCGGGGGGTGAGAGGCACTT < 41bp 0.5947294424853 0.876115712790041 0.42170796 0.914863 prediction 0.562772540609482 Functional Gain - DLG5-AS1 ENSG00000233871 ncRNA_intronic Human processed_transcript chr10:79687698 chr10:79687701 . . 0 24 hm5C_associated_SNPs_103642 0 0 1 0 0 unknown 0.500231636851095 0.500231763699461 0.829726 2.5369673140041e-07 hm5C_site_56787 DeepMRMD:0.829726;iRNA_m5C:2.5369673140041e-07 56788 chr8 10555351 10555351 1 + T A LUAD 10555347 + 10555327 10555367 41 GCCGAGGGCATGGACAGGGACTTGTGGATCCACGAGCAGCA GCCGAGGGCATGGACAGGGACTTGAGGATCCACGAGCAGCA < 41bp 0.470976172608426 0.781380706889089 0.14385825 0.23345685 prediction 0.562761413778178 Functional Gain - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10555347 chr8:10555351 nonsynonymous SNV 0.018 4 25 hm5C_associated_SNPs_103643 0 0 0 1 0 unknown 0.50023164508767 0.500231643962714 0 0 hm5C_site_56788 DeepMRMD:0;iRNA_m5C:0 56789 chr2 9621568 9621568 1 + T G UCEC 9621566 + 9621546 9621586 41 ACAGCCTGGGAAGAACAGTGCATCATACAAGGTAAACAAAC ACAGCCTGGGAAGAACAGTGCAGCATACAAGGTAAACAAAC < 41bp 0.47399759500399 0.781377543133122 0.36323982 0.54915136 prediction 0.562755086266245 Functional Gain - IAH1 ENSG00000134330 CDS Human protein_coding chr2:9621566 chr2:9621568 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_103644 0 0 1 0 1 Ribosome 0.500231643910892 0.500231643921092 0.09830272 2.03987937652528e-11 hm5C_site_56789 DeepMRMD:0.09830272;iRNA_m5C:2.03987937652528e-11 56790 chr19 17394124 17394124 1 + T G rs2363956 17394122 + 17394102 17394142 41 GGTGACAACAGGGACATTGGCTTGGAGGCTGACCCAGGACC GGTGACAACAGGGACATTGGCTGGGAGGCTGACCCAGGACC < 41bp 0.564307650595965 0.84567833569232 0.093092054 0.6414243 prediction 0.56274137019271 Functional Gain - ANKLE1 ENSG00000160117 CDS Human protein_coding chr19:17394122 chr19:17394124 nonsynonymous SNV 0.002 2 23 hm5C_associated_SNPs_103645 0 1 0 0 1 chromatin 0.500231643921092 0.500231643921092 0.2828486 0 hm5C_site_56790 DeepMRMD:0.2828486;iRNA_m5C:0 56791 chr1 11586834 11586834 1 + C A rs374613319 11586830 + 11586810 11586850 41 ACGACCTTGGCCTGTGATGCCAAGCGGGGCTGGAAGTTTGA ACGACCTTGGCCTGTGATGCCAAGAGGGGCTGGAAGTTTGA < 41bp 0.377413023659855 0.781343844220686 0.16976345 0.36276072 prediction 0.562687688441371 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11586830 chr1:11586834 synonymous SNV . 0 25 hm5C_associated_SNPs_103646 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56791 DeepMRMD:0;iRNA_m5C:0 56792 chrX 34961524 34961524 1 + C G LUSC 34961523 + 34961503 34961543 41 GGAATCCTGCCCGCGGCCTCCCGAGACTCCGGTGTCCCGTC GGAATCCTGCCCGCGGCCTCCGGAGACTCCGGTGTCCCGTC < 41bp 0.552794559724444 0.834135434688163 0.6583592 0.91176784 prediction 0.562681749927438 Functional Gain - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961523 chrX:34961524 synonymous SNV . 0 22 hm5C_associated_SNPs_103647 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.50681728 0 hm5C_site_56792 DeepMRMD:0.50681728;iRNA_m5C:0 56793 chr1 33959192 33959192 1 + T G ESCA 33959190 + 33959170 33959210 41 GATGCTGTCAAACCTTCAACCTTGTGTCCTAAAGCCCCAGA GATGCTGTCAAACCTTCAACCTGGTGTCCTAAAGCCCCAGA < 41bp 0.445615484334701 0.781340394616105 0.07358816 0.22505182 prediction 0.562680789232211 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33959190 chr1:33959192 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_103648 0 0 1 0 1 exosome 0.500231643860533 0.500231643634753 0 0 hm5C_site_56793 DeepMRMD:0;iRNA_m5C:0 56794 chr1 149755799 149755799 1 + T A LIHC 149755795 + 149755775 149755815 41 CAGGGCGAAGTGACCCCATACAGCTGGAAATCCACAGAGGT CAGGGCGAAGTGACCCCATACAGCAGGAAATCCACAGAGGT < 41bp 0.548731037060439 0.830057087171938 0.4623405 0.4308265 prediction 0.562652100222999 Functional Gain - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149755795 chr1:149755799 nonsynonymous SNV 0.907 3 25 hm5C_associated_SNPs_103649 0 0 0 1 1 exosome 0.500231643386699 0.500231311384091 0 0 hm5C_site_56794 DeepMRMD:0;iRNA_m5C:0 56795 chr17 40996859 40996859 1 + C G SKCM 40996858 + 40996838 40996878 41 AGCTGTGATGCGCTTTCTGACCCAGCGGCTGGGGCCAGGGC AGCTGTGATGCGCTTTCTGACGCAGCGGCTGGGGCCAGGGC < 41bp 0.467870626985312 0.78132023808597 0.13569331 0.28593326 prediction 0.562640476171941 Functional Gain - AOC2 ENSG00000131480 CDS Human protein_coding chr17:40996858 chr17:40996859 synonymous SNV . 0 22 hm5C_associated_SNPs_103650 0 0 1 0 0 exosome 0.500231643923576 0.500231643921421 0 0 hm5C_site_56795 DeepMRMD:0;iRNA_m5C:0 56796 chr19 50979855 50979855 1 + G C rs371934738 50979856 - 50979836 50979876 41 GGCTCGACTGGGCGCTGCTACCGCCATCAGCAAGAGCAGGA GGCTCGACTGGGCGCTGCTACGGCCATCAGCAAGAGCAGGA < 41bp 0.51930643105202 0.800610047475538 0.39323515 0.39216894 prediction 0.562607232847036 Functional Gain - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50979856 chr19:50979855 synonymous SNV . 0 22 hm5C_associated_SNPs_103651 0 0 0 0 0 Cytosol 0.500231643922838 0.500231643921092 0 0 hm5C_site_56796 DeepMRMD:0;iRNA_m5C:0 56797 chr10 11912297 11912297 1 + C G rs116295162 11912296 + 11912276 11912316 41 GGACTGGCGCCGCGCAGACTCCCTGCCCCGGCCCCAGGGCA GGACTGGCGCCGCGCAGACTCGCTGCCCCGGCCCCAGGGCA < 41bp 0.523555340025802 0.804851841881641 0.14266896 0.25301588 prediction 0.562593003711677 Functional Gain - PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11912296 chr10:11912297 synonymous SNV . 0 22 hm5C_associated_SNPs_103652 0 0 0 0 0 chromatin 0.500231643921178 0.500231643921139 0 0 hm5C_site_56797 DeepMRMD:0;iRNA_m5C:0 56798 chr11 118827694 118827694 1 + C A UCEC 118827690 + 118827670 118827710 41 CACCTCACAGGAGGCAATGCCACACTGATGGTCCGGAGAGC CACCTCACAGGAGGCAATGCCACAATGATGGTCCGGAGAGC < 41bp 0.362644793393012 0.781288277109139 0.28914738 0.35235226 prediction 0.562576554218277 Functional Gain - UPK2 ENSG00000110375 CDS Human protein_coding chr11:118827690 chr11:118827694 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_103653 0 0 0 0 1 exosome 0.500231632976184 0.500231643993095 0 2.20338216561089e-08 hm5C_site_56798 DeepMRMD:0;iRNA_m5C:2.20338216561089e-08 56799 chr17 65027540 65027540 1 + C A rs150301909 65027536 + 65027516 65027556 41 TGTCGGGCCACCAGAAGGCTCTGCCGGACGCCAAGAAGACG TGTCGGGCCACCAGAAGGCTCTGCAGGACGCCAAGAAGACG < 41bp 0.397849978680278 0.781261398682295 0.17155918 0.2621031 prediction 0.562522797364591 Functional Gain - CACNG4 ENSG00000075461 UTR3 Human protein_coding chr17:65027536 chr17:65027540 . . 0 25 hm5C_associated_SNPs_103654 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_56799 DeepMRMD:0;iRNA_m5C:0 56800 chr12 18891956 18891956 1 + C G LUSC 18891955 + 18891935 18891975 41 CAGGAGTTATCCAATGAAGCCCTGAGAAAAATTCTACGAAG CAGGAGTTATCCAATGAAGCCGTGAGAAAAATTCTACGAAG < 41bp 0.506377070937623 0.787634365872491 0.18424147 0.34091192 prediction 0.562514589869736 Functional Gain - CAPZA3 ENSG00000177938 CDS Human protein_coding chr12:18891955 chr12:18891956 nonsynonymous SNV 0.993 2 22 hm5C_associated_SNPs_103655 0 0 0 0 0 unknown 0.500231643919618 0.5002316414255 0 0 hm5C_site_56800 DeepMRMD:0;iRNA_m5C:0 56801 chr4 159790382 159790382 1 + T G OV 159790380 + 159790360 159790400 41 GTCCAGCGGGGCCCTGGCCTCGTGGCTGGTGCGAATATCCC GTCCAGCGGGGCCCTGGCCTCGGGGCTGGTGCGAATATCCC < 41bp 0.580294652755247 0.861549102227904 0.8205997 0.9359946 prediction 0.562508898945314 Functional Gain - FNIP2 ENSG00000052795 CDS Human protein_coding chr4:159790380 chr4:159790382 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_103656 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921092 0.2307898 0 hm5C_site_56801 DeepMRMD:0.2307898;iRNA_m5C:0 56802 chr21 46032237 46032237 1 + C G LUSC 46032236 + 46032216 46032256 41 GCCCCAGCCCCCTGCCTGGCCCTGGTCTGTGCCCCAGTGAG GCCCCAGCCCCCTGCCTGGCCGTGGTCTGTGCCCCAGTGAG < 41bp 0.509428125809092 0.79067916323533 0.1433818 0.65436906 prediction 0.562502074852476 Functional Gain - KRTAP10-8 ENSG00000187766 CDS Human protein_coding chr21:46032236 chr21:46032237 nonsynonymous SNV 0.071 1 22 hm5C_associated_SNPs_103657 0 0 0 0 0 unknown 0.500231646062401 0.500231643920957 0.30873812 0 hm5C_site_56802 DeepMRMD:0.30873812;iRNA_m5C:0 56803 chr8 30969283 30969283 1 + T G rs2230011 30969281 + 30969261 30969301 41 GGCGAAAAACAGGGAATATCCTTCAGGATCTGCAGCCATTT GGCGAAAAACAGGGAATATCCTGCAGGATCTGCAGCCATTT < 41bp 0.544020244106751 0.825265651194574 0.07963386 0.16670987 prediction 0.562490814175647 Functional Gain - WRN ENSG00000165392 CDS Human protein_coding chr8:30969281 chr8:30969283 synonymous SNV . 0 23 hm5C_associated_SNPs_103658 1 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_56803 DeepMRMD:0;iRNA_m5C:0 Werner syndrome Werner syndrome 56804 chr14 73637738 73637738 1 + C G rs139863395 73637737 + 73637717 73637757 41 TAAGTCAGTCAGCTTTTATACCCGGAAGGATGGGCAGCTGT TAAGTCAGTCAGCTTTTATACGCGGAAGGATGGGCAGCTGT < 41bp 0.5194986096968 0.800740836352858 0.09214467 0.28384042 prediction 0.562484453312116 Functional Gain - PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637737 chr14:73637738 synonymous SNV . 0 22 hm5C_associated_SNPs_103659 0 0 1 1 1 Ribosome 0.500231643921092 0.500231643921165 0 1.45439216225896e-13 hm5C_site_56804 DeepMRMD:0;iRNA_m5C:1.45439216225896e-13 56805 chr9 133750392 133750392 1 + C G CESC 133750391 + 133750371 133750411 41 TCCCCATCAAATGGACTGCACCCGAGAGCCTGGCCTACAAC TCCCCATCAAATGGACTGCACGCGAGAGCCTGGCCTACAAC < 41bp 0.470257223712193 0.781240264335169 0.35860598 0.7576735 prediction 0.562480528670339 Functional Gain - ABL1 ENSG00000097007 CDS Human protein_coding chr9:133750391 chr9:133750392 nonsynonymous SNV 0.983 5 22 hm5C_associated_SNPs_103660 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.50023164392109 0.515347 0 hm5C_site_56805 DeepMRMD:0.515347;iRNA_m5C:0 56806 chr11 61724453 61724453 1 + C A rs74653691 61724449 + 61724429 61724469 41 GGTCGAATCCGGGACCCTATCCTGCTCCAGAGCCTGCTGAA GGTCGAATCCGGGACCCTATCCTGATCCAGAGCCTGCTGAA < 41bp 0.399811766823112 0.781228541491303 0.030604959 0.3380943 prediction 0.562457082982607 Functional Gain - BEST1 ENSG00000167995 CDS Human protein_coding chr11:61724449 chr11:61724453 nonsynonymous SNV 0.979 5 25 hm5C_associated_SNPs_103661 5 0 0 1 1 chromatin 0.500231643927407 0.50023164392111 0 0 hm5C_site_56806 DeepMRMD:0;iRNA_m5C:0 not provided not provided 56807 chr20 3804858 3804858 1 + T G rs200309763 3804855 + 3804835 3804875 41 GCATTGAGGGCATCCTCACCCGCTTCCTGCCACATGGTCAG GCATTGAGGGCATCCTCACCCGCGTCCTGCCACATGGTCAG < 41bp 0.396461603282867 0.781224150701074 0.067679286 0.22532848 prediction 0.562448301402148 Functional Gain - AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3804855 chr20:3804858 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_103662 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921083 0 0 hm5C_site_56807 DeepMRMD:0;iRNA_m5C:0 56808 chr10 54074421 54074421 1 + C A LIHC 54074417 + 54074397 54074437 41 ACCCGGGCGGGAATAAGTACCAGACCATTGACAACTACCAG ACCCGGGCGGGAATAAGTACCAGAACATTGACAACTACCAG < 41bp 0.616991156726915 0.898212507703693 0.6158917 0.8148296 prediction 0.562442701953555 Functional Gain - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074417 chr10:54074421 nonsynonymous SNV 0.619 0 25 hm5C_associated_SNPs_103663 0 0 1 0 1 exosome 0.500231643921093 0.500231643927921 0.3978758 1.36577416043338e-11 hm5C_site_56808 DeepMRMD:0.3978758;iRNA_m5C:1.36577416043338e-11 56809 chr18 61449736 61449736 1 + T A LGG 61449732 + 61449712 61449752 41 TTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGCTCAAGATGA TTCGCTGCCCTGGCCCTGGTCCGCATGGGCGCTCAAGATGA < 41bp 0.453980612716424 0.781201605688878 0.16817263 0.20396742 prediction 0.562403211377755 Functional Gain - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61449732 chr18:61449736 nonsynonymous SNV 0.357 2 25 hm5C_associated_SNPs_103664 0 0 0 0 1 exosome 0.500231643921095 0.500231643920837 0 0 hm5C_site_56809 DeepMRMD:0;iRNA_m5C:0 56810 chr11 64367861 64367861 1 + C A UCEC 64367857 + 64367837 64367877 41 AGAAATGGGGGCTCTGCGCTCAGCCTTGGCCGTGCTGGGGC AGAAATGGGGGCTCTGCGCTCAGCATTGGCCGTGCTGGGGC < 41bp 0.618955359653336 0.900151094405541 0.7420921 0.7352392 prediction 0.562391469504408 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64367857 chr11:64367861 synonymous SNV . 0 25 hm5C_associated_SNPs_103665 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_56810 DeepMRMD:0;iRNA_m5C:0 56811 chr3 186358472 186358472 1 + C A rs182506996 186358468 + 186358448 186358488 41 GTGAACGACGCCCAGGAATACAGACGGGCAAGTAGGGACAG GTGAACGACGCCCAGGAATACAGAAGGGCAAGTAGGGACAG < 41bp 0.618328219005168 0.899518859170292 0.47104034 0.44069594 prediction 0.562381280330248 Functional Gain - FETUB ENSG00000090512 CDS Human protein_coding chr3:186358468 chr3:186358472 synonymous SNV . 0 25 hm5C_associated_SNPs_103666 0 0 0 0 1 exosome 0.500231643921243 0.500231643921092 0 0 hm5C_site_56811 DeepMRMD:0;iRNA_m5C:0 56812 chr5 112228333 112228333 1 + T A STAD 112228329 + 112228309 112228349 41 TGTCCAAGAGGAAAACACTGCAACTTTCTTCATGTGTTCAG TGTCCAAGAGGAAAACACTGCAACATTCTTCATGTGTTCAG < 41bp 0.507262275270419 0.788452192927051 0.0758594 0.13114935 prediction 0.562379835313265 Functional Gain - SRP19 ENSG00000212643 CDS Human protein_coding chr5:112228329 chr5:112228333 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_103667 0 0 1 0 0 Ribosome 0.500231643819417 0.50023164385772 0 7.66045005207161e-11 hm5C_site_56812 DeepMRMD:0;iRNA_m5C:7.66045005207161e-11 56813 chr3 129247931 129247931 1 + C A LUAD 129247927 + 129247907 129247947 41 AATTTGGAGGGCTTCTTTGCCACCCTGGGCGGTATGAGCCG AATTTGGAGGGCTTCTTTGCCACCATGGGCGGTATGAGCCG < 41bp 0.618010664929939 0.899200056977572 0.3294243 0.50091153 prediction 0.562378784095267 Functional Gain - RHO ENSG00000163914 CDS Human protein_coding chr3:129247927 chr3:129247931 nonsynonymous SNV 0.983 2 25 hm5C_associated_SNPs_103668 0 0 0 0 1 Cytosol 0.500230147329893 0.500231634290857 0.00182305999999999 2.97392192716295e-06 hm5C_site_56813 DeepMRMD:0.00182305999999999;iRNA_m5C:2.97392192716295e-06 56814 chr10 43882176 43882176 1 + T G STAD 43882174 + 43882154 43882194 41 CTCCAGGCCACTGTAAGTGGCCTGGGCAGCAGACACCCCCA CTCCAGGCCACTGTAAGTGGCCGGGGCAGCAGACACCCCCA < 41bp 0.435113365929084 0.781185181491955 0.27816945 0.91743135 prediction 0.56237036298391 Functional Gain - HNRNPF ENSG00000169813 CDS Human protein_coding chr10:43882174 chr10:43882176 nonsynonymous SNV 0.540 2 23 hm5C_associated_SNPs_103669 0 0 0 0 0 Cytosol 0.500231643919752 0.500231643921295 0.8348627 3.08708614227271e-12 hm5C_site_56814 DeepMRMD:0.8348627;iRNA_m5C:3.08708614227271e-12 56815 chr13 96205164 96205164 1 + T G SKCM 96205162 + 96205142 96205182 41 TTGGGCCAACCTGTGGAAGGCGTGCGTTACCGACTCCACGG TTGGGCCAACCTGTGGAAGGCGGGCGTTACCGACTCCACGG < 41bp 0.574283469907319 0.8554674622158 0.4668326 0.9434403 prediction 0.562367984616962 Functional Gain - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96205162 chr13:96205164 nonsynonymous SNV 0.947 5 23 hm5C_associated_SNPs_103670 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.8868806 0 hm5C_site_56815 DeepMRMD:0.8868806;iRNA_m5C:0 56816 chr20 31628100 31628100 1 + T A rs73904431 31628096 + 31628076 31628116 41 AGTACTCAGTGCATGAGAACCAGCTGCAGATGGCCACTTCT AGTACTCAGTGCATGAGAACCAGCAGCAGATGGCCACTTCT < 41bp 0.55367614705844 0.834841517503492 0.8396039 0.61983347 prediction 0.562330740890103 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31628096 chr20:31628100 nonsynonymous SNV 0.988 3 25 hm5C_associated_SNPs_103671 0 0 0 0 2 unknown 0.500231644014088 0.500231643921611 0 0 hm5C_site_56816 DeepMRMD:0;iRNA_m5C:0 56817 chr7 12668813 12668813 1 + T G ESCA 12668810 + 12668790 12668830 41 GTGGTGACTGCTACATCATACTCTACACCTATCCCAGAGGA GTGGTGACTGCTACATCATACTCGACACCTATCCCAGAGGA < 41bp 0.412571747949139 0.781161697647874 0.50074863 0.34476954 prediction 0.562323395295748 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12668810 chr7:12668813 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_103672 0 0 1 2 2 nucleolus 0.500231643921092 0.500231643954355 0 6.65254518139591e-11 hm5C_site_56817 DeepMRMD:0;iRNA_m5C:6.65254518139591e-11 56818 chr2 27729424 27729424 1 + C A UCEC 27729420 + 27729400 27729440 41 AGCCAAAGCCCCAAGATTGCCACCCTGATGAAGAGTGTCAG AGCCAAAGCCCCAAGATTGCCACCATGATGAAGAGTGTCAG < 41bp 0.348969748410425 0.781141434365896 0.06354499 0.045356095 prediction 0.562282868731792 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27729420 chr2:27729424 nonsynonymous SNV 0.102 3 25 hm5C_associated_SNPs_103673 0 0 1 0 2 cytosol 0.500231643921092 0.500231643921061 0 0 hm5C_site_56818 DeepMRMD:0;iRNA_m5C:0 56819 chr7 2652226 2652226 1 + C A rs544013946 2652222 + 2652202 2652242 41 GGGGTGAGCTGTGGGCGGGGCGAGCTGTGGGTGGGGCCTAG GGGGTGAGCTGTGGGCGGGGCGAGATGTGGGTGGGGCCTAG < 41bp 0.583128077863458 0.864240400354419 0.85408616 0.89014566 prediction 0.562224644981922 Functional Gain - IQCE ENSG00000106012 UTR3 Human protein_coding chr7:2652222 chr7:2652226 . . 0 25 hm5C_associated_SNPs_103674 0 0 0 0 0 chromatin 0.500231643921092 0.500231644182998 0.0721189999999998 5.23811882757741e-10 hm5C_site_56819 DeepMRMD:0.0721189999999998;iRNA_m5C:5.23811882757741e-10 56820 chr1 160144478 160144478 1 + C A LUSC 160144474 + 160144454 160144494 41 CTGGCTCTGACGTCTCTAAGCAGGCAGCCGACATGATCCTG CTGGCTCTGACGTCTCTAAGCAGGAAGCCGACATGATCCTG < 41bp 0.626351789239627 0.907448963001643 0.838632 0.74766 prediction 0.562194347524032 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160144474 chr1:160144478 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_103675 0 0 0 1 0 exosome 0.500231630850563 0.500231643583382 0 2.54656367104644e-08 hm5C_site_56820 DeepMRMD:0;iRNA_m5C:2.54656367104644e-08 56821 chr1 11715921 11715921 1 + C A COAD 11715917 + 11715897 11715937 41 CTGTGGGGAACATCAACGAGCTGCCCGAGAACATCCTGCTG CTGTGGGGAACATCAACGAGCTGCACGAGAACATCCTGCTG < 41bp 0.371377340396037 0.781096291374183 0.083889455 0.21330231 prediction 0.562192582748366 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11715917 chr1:11715921 nonsynonymous SNV 0.973 5 25 hm5C_associated_SNPs_103676 0 0 0 0 1 Nucleus 0.500231643921111 0.500231640449399 0 0 hm5C_site_56821 DeepMRMD:0;iRNA_m5C:0 56822 chr7 2671695 2671695 1 + C A rs184558238 2671691 + 2671671 2671711 41 GAGCGCGCGGATGATGCGGGCGGCCAGGCGGGGGTCGACGG GAGCGCGCGGATGATGCGGGCGGCAAGGCGGGGGTCGACGG < 41bp 0.545117461703406 0.82620894407366 0.91764337 0.9147786 prediction 0.562182964740507 Functional Gain - TTYH3 ENSG00000136295 UTR5 Human protein_coding chr7:2671691 chr7:2671695 . . 0 25 hm5C_associated_SNPs_103677 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_56822 DeepMRMD:0;iRNA_m5C:0 56823 chr16 88780603 88780603 1 + C G rs73262673 88780602 + 88780582 88780622 41 CTTCATCCTCAGGCTGCAGACCCAGTTCCCCTCCACTGTCA CTTCATCCTCAGGCTGCAGACGCAGTTCCCCTCCACTGTCA < 41bp 0.471154202332558 0.781087698489016 0.044481993 0.2593413 prediction 0.562175396978033 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88780602 chr16:88780603 synonymous SNV . 0 22 hm5C_associated_SNPs_103678 0 0 1 0 2 Cytosol 0.50023164392112 0.500231643921113 0 0 hm5C_site_56823 DeepMRMD:0;iRNA_m5C:0 56824 chr11 57947633 57947633 1 + C A UCEC 57947629 + 57947609 57947649 41 AAGCCAGGCCAAGACCTTCTCCACCTGCACCTCCCACCTCA AAGCCAGGCCAAGACCTTCTCCACATGCACCTCCCACCTCA < 41bp 0.37864088302616 0.781084868933325 0.14405674 0.50650984 prediction 0.56216973786665 Functional Gain - OR9Q1 ENSG00000186509 CDS Human protein_coding chr11:57947629 chr11:57947633 synonymous SNV . 0 25 hm5C_associated_SNPs_103679 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0.01301968 0 hm5C_site_56824 DeepMRMD:0.01301968;iRNA_m5C:0 56825 chr19 3435102 3435102 1 + C G rs565638062 3435098 + 3435078 3435118 41 AAGGAGCAAGCGGCACAAATCGGGCTCGATGGAGGAAGACG AAGGAGCAAGCGGCACAAATCGGGGTCGATGGAGGAAGACG < 41bp 0.515053245943659 0.796126469011453 0.91007316 0.9354439 prediction 0.562146446135588 Functional Gain - NFIC ENSG00000141905 CDS Human protein_coding chr19:3435098 chr19:3435102 synonymous SNV . 0 25 hm5C_associated_SNPs_103680 0 0 1 0 1 Ribosome 0.500231643921047 0.500231643166284 0.0507414799999999 0 hm5C_site_56825 DeepMRMD:0.0507414799999999;iRNA_m5C:0 56826 chr3 50231296 50231296 1 + T G LUSC 50231294 + 50231274 50231314 41 ATCATCGAGACGCAGTTCTCCTTCAAGGATCTCAACTTCCG ATCATCGAGACGCAGTTCTCCTGCAAGGATCTCAACTTCCG < 41bp 0.451661356542809 0.781071819605604 0.016256303 0.038035482 prediction 0.562143639211207 Functional Gain - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50231294 chr3:50231296 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_103681 0 0 0 0 1 exosome 0.500231644423278 0.500231642014353 0 0 hm5C_site_56826 DeepMRMD:0;iRNA_m5C:0 56827 chr10 43615061 43615061 1 + C A LUAD 43615057 + 43615037 43615077 41 CGAGAGCCGCAAAGTGGGGCCTGGCTACCTGGGCAGTGGAG CGAGAGCCGCAAAGTGGGGCCTGGATACCTGGGCAGTGGAG < 41bp 0.378229081021385 0.781060172092204 0.23880616 0.40814412 prediction 0.562120344184409 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43615057 chr10:43615061 synonymous SNV . 0 25 hm5C_associated_SNPs_103682 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_56827 DeepMRMD:0;iRNA_m5C:0 56828 chr1 68150931 68150931 1 + T G rs3783460 68150929 + 68150909 68150949 41 GGCAGCGGCCCAATTAGTGTCGTGCGGCCCGTGGCGAGGCG GGCAGCGGCCCAATTAGTGTCGGGCGGCCCGTGGCGAGGCG < 41bp 0.4676276362682 0.781049207919615 0.3360685 0.71921253 prediction 0.562098415839231 Functional Gain - GADD45A ENSG00000116717 UTR5 Human protein_coding chr1:68150929 chr1:68150931 . . 0 23 hm5C_associated_SNPs_103683 0 0 1 0 0 Cytosol 0.500231643933199 0.50023164394393 0.43842506 2.14608331106092e-11 hm5C_site_56828 DeepMRMD:0.43842506;iRNA_m5C:2.14608331106092e-11 56829 chr22 26118334 26118334 1 + C G LUSC 26118333 + 26118313 26118353 41 CAGCGGCTATTGCGTCGTGCCCCGAAGTTCCTCAACAAACC CAGCGGCTATTGCGTCGTGCCGCGAAGTTCCTCAACAAACC < 41bp 0.481971663295721 0.781035601610559 0.12972498 0.51711404 prediction 0.562071203221118 Functional Gain - GRK3 ENSG00000100077 CDS Human protein_coding chr22:26118333 chr22:26118334 nonsynonymous SNV 0.290 1 22 hm5C_associated_SNPs_103684 0 0 1 0 0 chromatin 0.500231637437778 0.500231598753475 0.0342280800000001 0 hm5C_site_56829 DeepMRMD:0.0342280800000001;iRNA_m5C:0 56830 chr16 9185952 9185952 1 + C G KIRC 9185951 + 9185931 9185971 41 CGAGATCCAGGAGCACGGGCCCGAGCACTGGTTCTCCAAGT CGAGATCCAGGAGCACGGGCCGGAGCACTGGTTCTCCAAGT < 41bp 0.489224586112281 0.781029356499383 0.32166016 0.8739567 prediction 0.562058712998766 Functional Gain - C16orf72 ENSG00000182831 CDS Human protein_coding chr16:9185951 chr16:9185952 synonymous SNV . 0 22 hm5C_associated_SNPs_103685 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0.7479134 0 hm5C_site_56830 DeepMRMD:0.7479134;iRNA_m5C:0 56831 chr19 15791066 15791066 1 + C G rs61731193 15791065 + 15791045 15791085 41 TCATGTCAGCTGCCATTGCACCCAAGGATAATCTCTTCATC TCATGTCAGCTGCCATTGCACGCAAGGATAATCTCTTCATC < 41bp 0.551297849099009 0.832325920884927 0.022039503 0.047946602 prediction 0.562056143571838 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15791065 chr19:15791066 nonsynonymous SNV 0.008 3 22 hm5C_associated_SNPs_103686 0 0 1 0 2 exosome 0.500231644022883 0.50023164392126 0 0 hm5C_site_56831 DeepMRMD:0;iRNA_m5C:0 56832 chr17 28706011 28706011 1 + C A rs181199485 28706007 + 28705987 28706027 41 CGCTGCTGGAAGATGGCGAGCGGCCGGGACGAGCGGCCGCC CGCTGCTGGAAGATGGCGAGCGGCAGGGACGAGCGGCCGCC < 41bp 0.591113043624534 0.872121686914419 0.8312167 0.87212694 prediction 0.56201728657977 Functional Gain - CPD ENSG00000108582 CDS Human protein_coding chr17:28706007 chr17:28706011 synonymous SNV . 0 25 hm5C_associated_SNPs_103687 0 0 1 0 0 Nucleus 0.500231643137681 0.500231637595201 0.08182048 0 hm5C_site_56832 DeepMRMD:0.08182048;iRNA_m5C:0 56833 chr4 146576477 146576477 1 + C A STAD 146576473 + 146576453 146576493 41 TGTTAGAGCATTTCAGGACCCACCCCACAGTCCGGGAACAG TGTTAGAGCATTTCAGGACCCACCACACAGTCCGGGAACAG < 41bp 0.380765958962211 0.781002685183598 0.058582336 0.04910177 prediction 0.562005370367195 Functional Gain - MMAA ENSG00000151611 CDS Human protein_coding chr4:146576473 chr4:146576477 nonsynonymous SNV 0.936 5 25 hm5C_associated_SNPs_103688 0 0 0 0 0 nucleoplasm 0.500231643921093 0.500231643303556 0 0 hm5C_site_56833 DeepMRMD:0;iRNA_m5C:0 56834 chr5 140581385 140581385 1 + C G LUSC 140581384 + 140581364 140581404 41 CTCCCTGAGGCGGCACCGGCCCAGGCCCAGGCCGACTCGCT CTCCCTGAGGCGGCACCGGCCGAGGCCCAGGCCGACTCGCT < 41bp 0.482804447776769 0.780996946935514 0.77489823 0.91121984 prediction 0.561993893871029 Functional Gain - PCDHB11 ENSG00000197479 CDS Human protein_coding chr5:140581384 chr5:140581385 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_103689 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643916938 0.27264322 0 hm5C_site_56834 DeepMRMD:0.27264322;iRNA_m5C:0 56835 chr6 50791230 50791230 1 + C A LUAD 50791226 + 50791206 50791246 41 GCTGTCCCACACCCCGTCGTCGGACTTCCAGCCGCCCTACT GCTGTCCCACACCCCGTCGTCGGAATTCCAGCCGCCCTACT < 41bp 0.626409910832486 0.90739028714953 0.8974284 0.9263409 prediction 0.561960752634089 Functional Gain - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50791226 chr6:50791230 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_103690 0 0 0 0 0 Endoplasmic reticulum 0.500231643921089 0.50023164392113 0.057825 8.08242361927114e-14 hm5C_site_56835 DeepMRMD:0.057825;iRNA_m5C:8.08242361927114e-14 56836 chr20 57876637 57876637 1 + C A LUAD 57876633 + 57876613 57876653 41 CCCGACAGCACTGCAGGGTCCAAGCCCTGGAAGCCCTGGGC CCCGACAGCACTGCAGGGTCCAAGACCTGGAAGCCCTGGGC < 41bp 0.616581180618424 0.897557087473921 0.19297472 0.46177328 prediction 0.561951813710994 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57876633 chr20:57876637 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_103691 0 0 0 0 0 exosome 0.500232222474837 0.500231662502205 0 0 hm5C_site_56836 DeepMRMD:0;iRNA_m5C:0 56837 chr19 6534800 6534800 1 + T G UCEC 6534797 + 6534777 6534817 41 CGAGGGCTCAGGCTCCGTTTCACTTGCGCTGCACCTGCAGC CGAGGGCTCAGGCTCCGTTTCACGTGCGCTGCACCTGCAGC < 41bp 0.38922655611739 0.780974806578939 0.22750944 0.3042509 prediction 0.561949613157877 Functional Gain - TNFSF9 ENSG00000125657 CDS Human protein_coding chr19:6534797 chr19:6534800 nonsynonymous SNV 0.000 4 24 hm5C_associated_SNPs_103692 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921093 0 1.11022302462516e-15 hm5C_site_56837 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 56838 chr1 11249940 11249940 1 + T A rs532498579 11249936 + 11249916 11249956 41 CGGCTCACAGATGCTGAGAGCAAGTACTCCGAGATGAACAA CGGCTCACAGATGCTGAGAGCAAGAACTCCGAGATGAACAA < 41bp 0.477516518266761 0.780958013264183 0.91155434 0.82278395 prediction 0.561916026528367 Functional Gain - ANGPTL7 ENSG00000171819 CDS Human protein_coding chr1:11249936 chr1:11249940 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_103693 0 0 0 0 1 nucleoplasm 0.500231662746879 0.500231648474993 0 0 hm5C_site_56838 DeepMRMD:0;iRNA_m5C:0 56839 chr7 90894729 90894729 1 + C G COAD 90894728 + 90894708 90894748 41 CATGTACGCGCCCGTGTGCACCGTGCTAGAGCAGGCGCTGC CATGTACGCGCCCGTGTGCACGGTGCTAGAGCAGGCGCTGC < 41bp 0.478031655728864 0.780957287072788 0.26604515 0.4220109 prediction 0.561914574145576 Functional Gain - FZD1 ENSG00000157240 CDS Human protein_coding chr7:90894728 chr7:90894729 synonymous SNV . 0 22 hm5C_associated_SNPs_103694 0 0 0 0 0 Endoplasmic reticulum 0.500231643945882 0.500231644741245 0 1.59072621741529e-09 hm5C_site_56839 DeepMRMD:0;iRNA_m5C:1.59072621741529e-09 56840 chr10 25465155 25465155 1 + A T ESCA 25465159 - 25465139 25465179 41 TAACTCCCGTTCTCGCACTCCAGATAAGGCGGAGACCACTT TAACTCCCGTTCTCGCACTCCAGAAAAGGCGGAGACCACTT < 41bp 0.514084621047397 0.795027825701332 0.7591779 0.45366472 prediction 0.56188640930787 Functional Gain - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25465159 chr10:25465155 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_103695 0 0 0 0 0 Endoplasmic reticulum 0.50023171709941 0.500231643921275 0 0 hm5C_site_56840 DeepMRMD:0;iRNA_m5C:0 56841 chr2 226447479 226447479 1 + T G HNSC 226447477 + 226447457 226447497 41 ATGGGGAGGTCCCTGACTCCCCTGAGCCTCAAAAGGCCTCC ATGGGGAGGTCCCTGACTCCCCGGAGCCTCAAAAGGCCTCC < 41bp 0.583820858819895 0.864763022732766 0.0915606 0.5787571 prediction 0.561884327825742 Functional Gain - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226447477 chr2:226447479 nonsynonymous SNV 0.518 4 23 hm5C_associated_SNPs_103696 0 0 0 0 0 nucleus 0.500231643923496 0.500231644120552 0.1575142 3.94112742441166e-10 hm5C_site_56841 DeepMRMD:0.1575142;iRNA_m5C:3.94112742441166e-10 56842 chr8 146220352 146220352 1 + C A LUAD 146220348 + 146220328 146220368 41 GCTTTTGTTCCTGCTGGGCCCCAGCTTGGTCCTCGCCATCT GCTTTTGTTCCTGCTGGGCCCCAGATTGGTCCTCGCCATCT < 41bp 0.4400461787714 0.78092487482721 0.17723435 0.40019134 prediction 0.56184974965442 Functional Gain - TMED10P1 ENSG00000196922;ENSG00000254618 ncRNA_exonic Human other chr8:146220348 chr8:146220352 . . 0 25 hm5C_associated_SNPs_103697 0 0 0 0 0 unknown 0.500231643920341 0.500231643921097 0 1.51101353651484e-12 hm5C_site_56842 DeepMRMD:0;iRNA_m5C:1.51101353651484e-12 56843 chr8 11174295 11174295 1 + T G rs150773426 11174293 + 11174273 11174313 41 ACTGCGTGTGGCAGATCCTTCGTCAGTTTCCCTGTTCTTTT ACTGCGTGTGGCAGATCCTTCGGCAGTTTCCCTGTTCTTTT < 41bp 0.568773927541418 0.84969647067876 0.09751138 0.8589418 prediction 0.561845086274685 Functional Gain - MTMR9 ENSG00000104643 CDS Human protein_coding chr8:11174293 chr8:11174295 synonymous SNV . 0 23 hm5C_associated_SNPs_103698 0 0 0 0 0 Ribosome 0.500231607017638 0.500231643920334 0.7178836 7.3805391131998e-08 hm5C_site_56843 DeepMRMD:0.7178836;iRNA_m5C:7.3805391131998e-08 56844 chr8 120435207 120435207 1 + C A LUAD 120435203 + 120435183 120435223 41 CAGTGATGGCCGCTGCTGCACTCCCCACAATACCAAAACCA CAGTGATGGCCGCTGCTGCACTCCACACAATACCAAAACCA < 41bp 0.368469162287175 0.780921071294654 0.13166359 0.8776814 prediction 0.561842142589308 Functional Gain - NOV ENSG00000136999 CDS Human protein_coding chr8:120435203 chr8:120435207 synonymous SNV . 0 25 hm5C_associated_SNPs_103699 0 0 1 0 0 exosome 0.500231551386972 0.496144547316522 0.7553628 0 hm5C_site_56844 DeepMRMD:0.7553628;iRNA_m5C:0 56845 chr1 28861871 28861871 1 + C G SKCM 28861870 + 28861850 28861890 41 GTGCCTGAGTTATTTGCCAACCGTGGTGGCCGGCAAGGCCT GTGCCTGAGTTATTTGCCAACGGTGGTGGCCGGCAAGGCCT < 41bp 0.470249892687986 0.780914844882288 0.57508683 0.8852869 prediction 0.561829689764575 Functional Gain - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861870 chr1:28861871 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_103700 0 0 1 0 1 Ribosome 0.500231643913851 0.500231643907046 0.62040014 0 hm5C_site_56845 DeepMRMD:0.62040014;iRNA_m5C:0 56846 chr3 39373970 39373970 1 + C A STAD 39373966 + 39373946 39373986 41 TATTGCCTCCTGTTTGTATTCAGTCTTCTGGGAAACAGCCT TATTGCCTCCTGTTTGTATTCAGTATTCTGGGAAACAGCCT < 41bp 0.395039361564869 0.780908009423902 0.31597412 0.33773464 prediction 0.561816018847804 Functional Gain - CCR8 ENSG00000179934 CDS Human protein_coding chr3:39373966 chr3:39373970 nonsynonymous SNV 0.821 2 25 hm5C_associated_SNPs_103701 0 0 0 0 0 exosome 0.500231643921415 0.500231644149233 0 4.55636639529189e-10 hm5C_site_56846 DeepMRMD:0;iRNA_m5C:4.55636639529189e-10 56847 chr21 34602242 34602242 1 + C A rs188401375 34602238 + 34602218 34602258 41 GCGGCGGCGCGGCGCCCGCGCTTCCGTATCGCTCCTCGTAG GCGGCGGCGCGGCGCCCGCGCTTCAGTATCGCTCCTCGTAG < 41bp 0.580921675261139 0.861827217045553 0.40015915 0.41501293 prediction 0.561811083568828 Functional Gain - IFNAR2 ENSG00000159110 UTR5 Human protein_coding chr21:34602238 chr21:34602242 . . 0 25 hm5C_associated_SNPs_103702 0 0 1 0 0 Ribosome 0.500231643744064 0.500231641653002 0 0 hm5C_site_56847 DeepMRMD:0;iRNA_m5C:0 56848 chr17 30815055 30815055 1 + C A CESC 30815051 + 30815031 30815071 41 TGCCGTCACCTCCGCAGGGACGCCCAAACGGGTCATCGTCC TGCCGTCACCTCCGCAGGGACGCCAAAACGGGTCATCGTCC < 41bp 0.364775894161868 0.78090392804005 0.09975994 0.7399523 prediction 0.561807856080101 Functional Gain - CDK5R1 ENSG00000176749 CDS Human protein_coding chr17:30815051 chr17:30815055 synonymous SNV . 0 25 hm5C_associated_SNPs_103703 0 0 0 0 1 chromatin 0.500231643921132 0.500232001455357 0.4799046 7.15068449563816e-07 hm5C_site_56848 DeepMRMD:0.4799046;iRNA_m5C:7.15068449563816e-07 56849 chr14 65208573 65208573 1 + C A SARC 65208569 + 65208549 65208589 41 GGGAGCAAGAGACAGGTGGGCTCCCGGCCGACTTCGTGGGC GGGAGCAAGAGACAGGTGGGCTCCAGGCCGACTTCGTGGGC < 41bp 0.36014804183937 0.780897125620906 0.6780292 0.85770375 prediction 0.561794251241813 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65208569 chr14:65208573 synonymous SNV . 0 25 hm5C_associated_SNPs_103704 0 0 1 0 0 Nucleus 0.500231643924132 0.500231643720255 0.3593491 0 hm5C_site_56849 DeepMRMD:0.3593491;iRNA_m5C:0 56850 chr11 7531177 7531177 1 + T G UCEC 7531174 + 7531154 7531194 41 AGGATGCTGAAGCCTCATTCCTCTTGTGTGGGGTTCTCTAT AGGATGCTGAAGCCTCATTCCTCGTGTGTGGGGTTCTCTAT < 41bp 0.401634663236515 0.780895315544694 0.12524462 0.23072344 prediction 0.561790631089387 Functional Gain - OLFML1 ENSG00000183801 CDS Human protein_coding chr11:7531174 chr11:7531177 nonsynonymous SNV 0.893 1 24 hm5C_associated_SNPs_103705 0 0 0 0 0 exosome 0.500232156380698 0.500231643085889 0 0 hm5C_site_56850 DeepMRMD:0;iRNA_m5C:0 56851 chr13 95365145 95365145 1 + T G rs9301991 95365142 + 95365122 95365162 41 GTGGATGAGGCTTGAGCAAGCGTTGGTCGCCCGGCCTCAGA GTGGATGAGGCTTGAGCAAGCGTGGGTCGCCCGGCCTCAGA < 41bp 0.438554473675252 0.780869550383407 0.55655956 0.9020554 prediction 0.561739100766814 Functional Gain - SOX21-AS1 ENSG00000227640 ncRNA_exonic Human lincRNA chr13:95365142 chr13:95365145 . . 0 24 hm5C_associated_SNPs_103706 0 0 0 0 0 unknown 0.500059056015937 0.500231643909314 0.69099168 0.000345175786754082 hm5C_site_56851 DeepMRMD:0.69099168;iRNA_m5C:0.000345175786754082 56852 chr1 35260771 35260771 1 + C G THCA 35260770 + 35260750 35260790 41 CCCTCAGAATGGCCAAAAACCCCCAAGTCGTCCCAGCAGCT CCCTCAGAATGGCCAAAAACCGCCAAGTCGTCCCAGCAGCT < 41bp 0.536153924100697 0.817012468055073 0.10013622 0.20537353 prediction 0.561717087908753 Functional Gain - GJA4 ENSG00000187513 CDS Human protein_coding chr1:35260770 chr1:35260771 synonymous SNV . 0 22 hm5C_associated_SNPs_103707 0 0 0 0 0 cytosol 0.500231643921093 0.500231643975843 0 1.09501518963384e-10 hm5C_site_56852 DeepMRMD:0;iRNA_m5C:1.09501518963384e-10 56853 chr14 71109125 71109125 1 + C G rs374263347 71109124 + 71109104 71109144 41 GCTGAAGGGGCTGCTGCCGCCCCCCGGGGAACGGGAGCGGG GCTGAAGGGGCTGCTGCCGCCGCCCGGGGAACGGGAGCGGG < 41bp 0.515217236691484 0.79606730408478 0.3473395 0.8115614 prediction 0.561700134786592 Functional Gain - TTC9 ENSG00000133985 CDS Human protein_coding chr14:71109124 chr14:71109125 synonymous SNV . 0 22 hm5C_associated_SNPs_103708 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.6231228 0 hm5C_site_56853 DeepMRMD:0.6231228;iRNA_m5C:0 56854 chr2 219300110 219300110 1 + C A rs61733654 219300106 + 219300086 219300126 41 GGTGGAAGGGCAGGAGCCAGCCAACTTCTGGATGGCCCTGG GGTGGAAGGGCAGGAGCCAGCCAAATTCTGGATGGCCCTGG < 41bp 0.381601119330371 0.780832781794791 0.27320102 0.7230979 prediction 0.561665563589581 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219300106 chr2:219300110 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_103709 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0.4461958 0 hm5C_site_56854 DeepMRMD:0.4461958;iRNA_m5C:0 56855 chr11 126110771 126110771 1 + C G SKCM 126110770 + 126110750 126110790 41 CATTAGTGCTGCAGTTGCGCCCCAAGTTCCAGCCCTCAAAT CATTAGTGCTGCAGTTGCGCCGCAAGTTCCAGCCCTCAAAT < 41bp 0.537484214721387 0.818311272267007 0.058051765 0.20344171 prediction 0.56165411509124 Functional Gain - FAM118B ENSG00000197798 CDS Human protein_coding chr11:126110770 chr11:126110771 synonymous SNV . 0 22 hm5C_associated_SNPs_103710 0 0 0 0 1 Ribosome 0.500231643921065 0.500231643709946 0 0 hm5C_site_56855 DeepMRMD:0;iRNA_m5C:0 56856 chr2 113676187 113676187 1 + C A rs144279173 113676183 + 113676163 113676203 41 CCCAAAAGGAATCAGCACGCCGGCCCTTCATCTTTTATAGG CCCAAAAGGAATCAGCACGCCGGCACTTCATCTTTTATAGG < 41bp 0.385618871046162 0.7808181922492 0.033418775 0.05072698 prediction 0.5616363844984 Functional Gain - IL37 ENSG00000125571 CDS Human protein_coding chr2:113676183 chr2:113676187 nonsynonymous SNV 0.034 3 25 hm5C_associated_SNPs_103711 0 0 0 0 1 exosome 0.500231643921092 0.500231643920894 0 0 hm5C_site_56856 DeepMRMD:0;iRNA_m5C:0 56857 chr2 234737372 234737372 1 + C A rs7564261 234737368 + 234737348 234737388 41 GACCAGGAGGAAGACGAGGCCCTGCGGGTGCTGTCCCTGCG GACCAGGAGGAAGACGAGGCCCTGAGGGTGCTGTCCCTGCG < 41bp 0.438501717951723 0.780816935126207 0.40834224 0.3166002 prediction 0.561633870252414 Functional Gain - MROH2A ENSG00000185038 CDS Human protein_coding chr2:234737368 chr2:234737372 synonymous SNV . 0 25 hm5C_associated_SNPs_103712 0 0 0 0 1 exosome 0.500231643921429 0.500231643937198 0 3.15385495497367e-11 hm5C_site_56857 DeepMRMD:0;iRNA_m5C:3.15385495497367e-11 56858 chr9 97847872 97847872 1 + C A rs377435234 97847868 + 97847848 97847888 41 CGCTGGGGCAGAGGCCGTTGCTGACGGGCCGGCCGCTGCTG CGCTGGGGCAGAGGCCGTTGCTGAAGGGCCGGCCGCTGCTG < 41bp 0.419711814673896 0.780802834886271 0.2198987 0.8194462 prediction 0.561605669772542 Functional Gain - C9orf3 ENSG00000148120 intronic Human protein_coding chr9:97847868 chr9:97847872 . . 0 25 hm5C_associated_SNPs_103713 0 0 1 0 0 Cytosol 0.500230861971524 0.500231464421249 0.6388924 1.20489945043545e-06 hm5C_site_56858 DeepMRMD:0.6388924;iRNA_m5C:1.20489945043545e-06 56859 chr19 11558430 11558430 1 + C G LUSC 11558429 + 11558409 11558449 41 CGAGGTGCAGGGGGAGCAGCCCAAGGTCCGTGTTTGGGGGA CGAGGTGCAGGGGGAGCAGCCGAAGGTCCGTGTTTGGGGGA < 41bp 0.480312920985371 0.78079492256412 0.86380625 0.87077487 prediction 0.56158984512824 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11558429 chr19:11558430 synonymous SNV . 0 22 hm5C_associated_SNPs_103714 0 0 1 0 1 Nucleus 0.500231643876884 0.500231643921092 0.01393724 8.84163853243081e-11 hm5C_site_56859 DeepMRMD:0.01393724;iRNA_m5C:8.84163853243081e-11 56860 chr11 65617417 65617417 1 + C G rs370896235 65617416 + 65617396 65617436 41 CCTCCCTCACTTCGCCCAGACCGAGTTCTCAGTCGTGCGGC CCTCCCTCACTTCGCCCAGACGGAGTTCTCAGTCGTGCGGC < 41bp 0.465023051281918 0.780759903748271 0.2941644 0.8270347 prediction 0.561519807496541 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65617416 chr11:65617417 synonymous SNV . 0 22 hm5C_associated_SNPs_103715 0 0 0 2 2 nucleoplasm 0.500231644035722 0.500231643888601 0.6540694 0 hm5C_site_56860 DeepMRMD:0.6540694;iRNA_m5C:0 56861 chr3 108568089 108568089 1 + C G LUSC 108568088 + 108568068 108568108 41 AAATAAGATGCAGGAAGCCACCCCATCTGCACAGGTGAGTT AAATAAGATGCAGGAAGCCACGCCATCTGCACAGGTGAGTT < 41bp 0.499745633758425 0.780750219142252 0.012364984 0.056955576 prediction 0.561500438284504 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108568088 chr3:108568089 synonymous SNV . 0 22 hm5C_associated_SNPs_103716 0 0 0 0 2 exosome 0.500231643913583 0.500231119468945 0 0 hm5C_site_56861 DeepMRMD:0;iRNA_m5C:0 56862 chr19 1046335 1046335 1 + C A LUAD 1046331 + 1046311 1046351 41 GTGGAGCGTGCAGCCGTCCGCGTGCTCAGCGGCGCCAACCC GTGGAGCGTGCAGCCGTCCGCGTGATCAGCGGCGCCAACCC < 41bp 0.400050705225787 0.780740307682846 0.8585334 0.9024912 prediction 0.561480615365693 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1046331 chr19:1046335 nonsynonymous SNV 0.354 1 25 hm5C_associated_SNPs_103717 0 0 1 0 1 Endoplasmic reticulum 0.500230071224633 0.500368902947742 0.0879156000000001 0.000277663446218712 hm5C_site_56862 DeepMRMD:0.0879156000000001;iRNA_m5C:0.000277663446218712 56863 chr8 10383152 10383152 1 + T G LUAD 10383149 + 10383129 10383169 41 CTGGTCACGGGAACTCAGCTCGGTCCACGGACTCCTCTCCC CTGGTCACGGGAACTCAGCTCGGGCCACGGACTCCTCTCCC < 41bp 0.390891645052432 0.780734560684614 0.41160285 0.82862926 prediction 0.561469121369228 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10383149 chr8:10383152 synonymous SNV . 0 24 hm5C_associated_SNPs_103718 0 0 0 0 1 exosome 0.500231640557405 0.500231643905362 0.65725852 6.69591315727303e-09 hm5C_site_56863 DeepMRMD:0.65725852;iRNA_m5C:6.69591315727303e-09 56864 chr1 161736177 161736177 1 + C A HNSC 161736173 + 161736153 161736193 41 GGGGGAGCCGGCTGGGGTTGCCGGCACCATGGAGTCACCTT GGGGGAGCCGGCTGGGGTTGCCGGAACCATGGAGTCACCTT < 41bp 0.41768295560164 0.780729244383642 0.80017 0.89821947 prediction 0.561458488767283 Functional Gain - ATF6 ENSG00000118217 CDS Human protein_coding chr1:161736173 chr1:161736177 synonymous SNV . 0 25 hm5C_associated_SNPs_103719 0 0 1 0 1 Endoplasmic reticulum 0.500231643256471 0.500231780986537 0.19609894 2.7546013114943e-07 hm5C_site_56864 DeepMRMD:0.19609894;iRNA_m5C:2.7546013114943e-07 56865 chr1 2426346 2426346 1 + C G rs567604431 2426342 + 2426322 2426362 41 GGGGAGGATGCCGGGGCCAGCAGACGCAATGGCCGCCTCGT GGGGAGGATGCCGGGGCCAGCAGAGGCAATGGCCGCCTCGT < 41bp 0.490627188081784 0.780720945663119 0.9117203 0.92149514 prediction 0.561441891326237 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2426342 chr1:2426346 nonsynonymous SNV 0.015 1 25 hm5C_associated_SNPs_103720 0 0 0 0 2 nucleus 0.50023164392123 0.500231643921092 0.0195496799999999 0 hm5C_site_56865 DeepMRMD:0.0195496799999999;iRNA_m5C:0 56866 chr1 169076073 169076073 1 + C G BRCA 169076072 + 169076052 169076092 41 CTGACCCGCCATCGCCATGGCCCGCGGGAAAGCCAAGGAGG CTGACCCGCCATCGCCATGGCGCGCGGGAAAGCCAAGGAGG < 41bp 0.516594890771836 0.797306987032117 0.21766427 0.3161701 prediction 0.561424192520562 Functional Gain - ATP1B1 ENSG00000143153 CDS Human protein_coding chr1:169076072 chr1:169076073 synonymous SNV . 0 22 hm5C_associated_SNPs_103721 0 0 1 0 1 Ribosome 0.500231643921093 0.500231643921247 0 3.08197911635943e-13 hm5C_site_56866 DeepMRMD:0;iRNA_m5C:3.08197911635943e-13 56867 chr4 99982392 99982392 1 + T G LUSC 99982390 + 99982370 99982410 41 GCTCAGTTTGAGCACACCCTCCTGGTCACAGACACTGGCTG GCTCAGTTTGAGCACACCCTCCGGGTCACAGACACTGGCTG < 41bp 0.45113300781586 0.780708104177716 0.06584358 0.6500029 prediction 0.561416208355432 Functional Gain - METAP1 ENSG00000164024 CDS Human protein_coding chr4:99982390 chr4:99982392 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_103722 0 0 1 2 1 Cytosol 0.500231643499072 0.500231645300972 0.3000058 3.60380036923402e-09 hm5C_site_56867 DeepMRMD:0.3000058;iRNA_m5C:3.60380036923402e-09 56868 chr18 33263520 33263520 1 + T G COAD 33263517 + 33263497 33263537 41 GGATGCCCATTGTGAGTGTACAGTGGGATGGCTGGAGCCTC GGATGCCCATTGTGAGTGTACAGGGGGATGGCTGGAGCCTC < 41bp 0.61543197519929 0.896136833146453 0.22848862 0.91423774 prediction 0.561409715894326 Functional Gain - GALNT1 ENSG00000141429 CDS Human protein_coding chr18:33263517 chr18:33263520 nonsynonymous SNV 0.924 0 24 hm5C_associated_SNPs_103723 0 0 1 0 1 Endoplasmic reticulum 0.500231643921089 0.500231643921092 0.82847548 7.32747196252603e-15 hm5C_site_56868 DeepMRMD:0.82847548;iRNA_m5C:7.32747196252603e-15 56869 chr10 47380872 47380872 1 + T G rs545813111 47380869 + 47380849 47380889 41 GCTATTAAAAGAAGCTGTACCTCTGAAGATAAAGTGGCCCA GCTATTAAAAGAAGCTGTACCTCGGAAGATAAAGTGGCCCA < 41bp 0.442357074715493 0.780695982777038 0.12996873 0.14571911 prediction 0.561391965554076 Functional Gain - FAM35DP ENSG00000189014 ncRNA_exonic Human unprocessed_pseudogene chr10:47380869 chr10:47380872 . . 0 24 hm5C_associated_SNPs_103724 0 0 0 0 0 unknown 0.500231643921075 0.500231643920045 0 0 hm5C_site_56869 DeepMRMD:0;iRNA_m5C:0 56870 chr9 117038033 117038033 1 + C A rs62640054 117038029 + 117038009 117038049 41 GGACGGGCCCCCCGGCCCCCCTGGCGTCACTGGTGTCCGGG GGACGGGCCCCCCGGCCCCCCTGGAGTCACTGGTGTCCGGG < 41bp 0.395175272943304 0.78069072573877 0.27726611 0.44665107 prediction 0.561381451477541 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117038029 chr9:117038033 synonymous SNV . 0 25 hm5C_associated_SNPs_103725 0 0 1 0 2 Nucleus 0.50023164392122 0.500231643921772 0 1.10444986489711e-12 hm5C_site_56870 DeepMRMD:0;iRNA_m5C:1.10444986489711e-12 56871 chr12 10213792 10213792 1 + T A LUSC 10213788 + 10213768 10213808 41 TCATCCAACAAGAGAGGGCACTGCTAAACTTTACAGAATGG TCATCCAACAAGAGAGGGCACTGCAAAACTTTACAGAATGG < 41bp 0.460160239543804 0.780685432262723 0.117666215 0.26061496 prediction 0.561370864525447 Functional Gain - CLEC9A ENSG00000197992 CDS Human protein_coding chr12:10213788 chr12:10213792 nonsynonymous SNV 0.012 1 25 hm5C_associated_SNPs_103726 0 0 0 0 1 exosome 0.500231643920726 0.500231643921082 0 7.12097047994575e-13 hm5C_site_56871 DeepMRMD:0;iRNA_m5C:7.12097047994575e-13 56872 chr11 55322514 55322514 1 + T A LUAD 55322510 + 55322490 55322530 41 GTTACTGGAGCTTGCCTGCACTGATACTCACATCTTTGGCC GTTACTGGAGCTTGCCTGCACTGAAACTCACATCTTTGGCC < 41bp 0.486604291323407 0.780676918442377 0.1872764 0.2556727 prediction 0.561353836884753 Functional Gain - OR4C15 ENSG00000181939 CDS Human protein_coding chr11:55322510 chr11:55322514 nonsynonymous SNV 0.956 1 25 hm5C_associated_SNPs_103727 0 0 0 0 0 unknown 0.500231643921092 0.500231643906514 0 0 hm5C_site_56872 DeepMRMD:0;iRNA_m5C:0 56873 chr19 34263296 34263296 1 + C A LUAD 34263292 + 34263272 34263312 41 CTACTGCGAGGTGCCCAAGGCCGGCTGCTCCAATTGGAAGC CTACTGCGAGGTGCCCAAGGCCGGATGCTCCAATTGGAAGC < 41bp 0.393499637871098 0.780671290677593 0.84062654 0.9002443 prediction 0.561342581355186 Functional Gain - CHST8 ENSG00000124302 CDS Human protein_coding chr19:34263292 chr19:34263296 synonymous SNV . 0 25 hm5C_associated_SNPs_103728 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.11923552 0 hm5C_site_56873 DeepMRMD:0.11923552;iRNA_m5C:0 56874 chr2 71251540 71251540 1 + C A rs62145106 71251536 + 71251516 71251556 41 ACGGCAAAGGTATTGGGGATCACACGGAAACTGCATGCCGC ACGGCAAAGGTATTGGGGATCACAAGGAAACTGCATGCCGC < 41bp 0.43065028404957 0.780661690899359 0.11837152 0.24466398 prediction 0.561323381798719 Functional Gain - OR7E91P ENSG00000236469 ncRNA_intronic Human antisense chr2:71251536 chr2:71251540 . . 0 25 hm5C_associated_SNPs_103729 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_56874 DeepMRMD:0;iRNA_m5C:0 56875 chr20 37356771 37356771 1 + T G UCEC 37356768 + 37356748 37356788 41 CGTGCTCAAGGGCCTCTTCGCGCTCGTCGCCTACCTCACCT CGTGCTCAAGGGCCTCTTCGCGCGCGTCGCCTACCTCACCT < 41bp 0.622426998944933 0.903058946843508 0.37922108 0.884472 prediction 0.561263895797149 Functional Gain - SLC32A1 ENSG00000101438 CDS Human protein_coding chr20:37356768 chr20:37356771 nonsynonymous SNV 0.972 4 24 hm5C_associated_SNPs_103730 0 0 0 0 0 exosome 0.500231643919392 0.500231646403171 0.768944 4.96755903078849e-09 hm5C_site_56875 DeepMRMD:0.768944;iRNA_m5C:4.96755903078849e-09 56876 chr2 220112473 220112473 1 + T A UCS 220112469 + 220112449 220112489 41 CTGTGTCATCGATGAGCGGACTGATGTCTGGGTGAGGAGCA CTGTGTCATCGATGAGCGGACTGAAGTCTGGGTGAGGAGCA < 41bp 0.469845657896368 0.78063194671405 0.1267032 0.1724278 prediction 0.561263893428099 Functional Gain - STK16 ENSG00000115661 CDS Human protein_coding chr2:220112469 chr2:220112473 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103731 0 0 1 1 2 Ribosome 0.500231643163107 0.500231663351819 0 4.03774240709254e-08 hm5C_site_56876 DeepMRMD:0;iRNA_m5C:4.03774240709254e-08 56877 chr1 159778165 159778165 1 + T A rs140069687 159778161 + 159778141 159778181 41 CAGAGCCGTGGCCAGTACAGCTGCTCTGGGCAGGTGATGTA CAGAGCCGTGGCCAGTACAGCTGCACTGGGCAGGTGATGTA < 41bp 0.457397349901707 0.780621390017717 0.2647435 0.27331603 prediction 0.561242780035434 Functional Gain - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159778161 chr1:159778165 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_103732 0 0 0 0 1 exosome 0.5002316449304 0.500231639515493 0 0 hm5C_site_56877 DeepMRMD:0;iRNA_m5C:0 56878 chr15 52497116 52497116 1 + T G OV 52497113 + 52497093 52497133 41 TGTCCTTGCGCAGGAAGAGGCTGTTCAGCGTGACCGCCCCG TGTCCTTGCGCAGGAAGAGGCTGGTCAGCGTGACCGCCCCG < 41bp 0.403339187269817 0.780619784356607 0.5883517 0.8118848 prediction 0.561239568713213 Functional Gain - MYO5C ENSG00000128833 CDS Human protein_coding chr15:52497113 chr15:52497116 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_103733 0 0 0 0 1 Nucleus 0.500232668179544 0.500231643906215 0.4470662 0 hm5C_site_56878 DeepMRMD:0.4470662;iRNA_m5C:0 56879 chr6 26273208 26273208 1 + C G OV 26273207 + 26273187 26273227 41 TCACTTCGGCTGCGAACATGCCTGAACCAGCTAAGTCAGCT TCACTTCGGCTGCGAACATGCGTGAACCAGCTAAGTCAGCT < 41bp 0.527545609697548 0.80816304754393 0.14076158 0.27378613 prediction 0.561234875692764 Functional Gain - HIST1H2BI ENSG00000168242 CDS Human other chr6:26273207 chr6:26273208 nonsynonymous SNV 0.015 1 22 hm5C_associated_SNPs_103734 0 0 0 0 0 exosome 0.500231676938366 0.500233064610905 0 2.7753450784207e-06 hm5C_site_56879 DeepMRMD:0;iRNA_m5C:2.7753450784207e-06 56880 chr22 35813849 35813849 1 + T A UCEC 35813845 + 35813825 35813865 41 AGAAGTTTATTGCCTACTGCCGAGTGTGAGTCCTGGACGCA AGAAGTTTATTGCCTACTGCCGAGAGTGAGTCCTGGACGCA < 41bp 0.555789023274016 0.836404820493797 0.76890874 0.8885807 prediction 0.56123159443956 Functional Gain - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35813845 chr22:35813849 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_103735 0 0 1 0 1 Cytosol 0.500231643796627 0.500231643920362 0.23934392 2.47470932634997e-10 hm5C_site_56880 DeepMRMD:0.23934392;iRNA_m5C:2.47470932634997e-10 56881 chrX 150840929 150840929 1 + C A LUAD 150840925 + 150840905 150840945 41 AGAAGCAGCAGCTGCAAGAGCAGCCACTGAAGCATAATGTC AGAAGCAGCAGCTGCAAGAGCAGCAACTGAAGCATAATGTC < 41bp 0.373375409285686 0.780607510169494 0.3976165 0.70740026 prediction 0.561215020338988 Functional Gain - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150840925 chrX:150840929 nonsynonymous SNV 0.044 1 25 hm5C_associated_SNPs_103736 0 0 0 0 0 cytosol 0.500231643682486 0.500229366280771 0.41480052 0 hm5C_site_56881 DeepMRMD:0.41480052;iRNA_m5C:0 56882 chr21 41151124 41151124 1 + C A COAD 41151120 + 41151100 41151140 41 GGACTTGGACTAGCAGGCACCATGCTTCTGACGCCGACGTG GGACTTGGACTAGCAGGCACCATGATTCTGACGCCGACGTG < 41bp 0.383331194251897 0.780604959129236 0.117473125 0.124533325 prediction 0.561209918258471 Functional Gain - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41151120 chr21:41151124 nonsynonymous SNV 0.164 1 25 hm5C_associated_SNPs_103737 0 0 0 0 0 exosome 0.500231643822575 0.500231643920771 0 1.96393568074882e-10 hm5C_site_56882 DeepMRMD:0;iRNA_m5C:1.96393568074882e-10 Obesity-related traits 56883 chr1 17265550 17265550 1 + C A LUAD 17265546 + 17265526 17265566 41 CTCGCCCGGCCGAGGCCGTTCACCCCGCCGAGGCCCCTCCC CTCGCCCGGCCGAGGCCGTTCACCACGCCGAGGCCCCTCCC < 41bp 0.381502291565585 0.780603151754997 0.8395834 0.9162327 prediction 0.561206303509993 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17265546 chr1:17265550 synonymous SNV . 0 25 hm5C_associated_SNPs_103738 0 0 0 0 1 chromatin 0.500231643921093 0.500231643923012 0.1532986 3.83915121915379e-12 hm5C_site_56883 DeepMRMD:0.1532986;iRNA_m5C:3.83915121915379e-12 56884 chr6 109764953 109764953 1 + C A UCEC 109764949 + 109764929 109764969 41 GTGCTGTGGGCAGGTGCATTCTACCTCTTCCACGTACAGGA GTGCTGTGGGCAGGTGCATTCTACATCTTCCACGTACAGGA < 41bp 0.62438239547559 0.904983165437834 0.14825282 0.6153243 prediction 0.561201539924489 Functional Gain - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109764949 chr6:109764953 nonsynonymous SNV 0.945 0 25 hm5C_associated_SNPs_103739 0 0 1 0 0 chromatin 0.50023164392715 0.500231643921091 0.2306486 0 hm5C_site_56884 DeepMRMD:0.2306486;iRNA_m5C:0 56885 chrX 149639246 149639246 1 + C A BRCA 149639242 + 149639222 149639262 41 CCCAGAGAAGCTCTCTAGCCCAGGCTTGCCACAGCAGTCCT CCCAGAGAAGCTCTCTAGCCCAGGATTGCCACAGCAGTCCT < 41bp 0.626838207571877 0.907436540569625 0.52346766 0.7715081 prediction 0.561196665995497 Functional Gain - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149639242 chrX:149639246 synonymous SNV . 0 25 hm5C_associated_SNPs_103740 0 0 0 0 0 Nucleus 0.500231643920525 0.500231643921092 0.49608088 1.13509202037676e-12 hm5C_site_56885 DeepMRMD:0.49608088;iRNA_m5C:1.13509202037676e-12 56886 chr19 1081559 1081559 1 + C A COAD 1081555 + 1081535 1081575 41 CTGGCCGCCCCCAGTGCTGCCTGGCCTGCCACAAGAAATGT CTGGCCGCCCCCAGTGCTGCCTGGACTGCCACAAGAAATGT < 41bp 0.3853995355707 0.780597360255424 0.058793724 0.07533324 prediction 0.561194720510848 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1081555 chr19:1081559 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_103741 0 0 1 0 1 chromatin 0.500231643921207 0.50023164392107 0 0 hm5C_site_56886 DeepMRMD:0;iRNA_m5C:0 56887 chr11 61447942 61447942 1 + C A rs560610024 61447938 + 61447918 61447958 41 GGAGCCCAGGATGGAGGTGGCGGTCGCGGCGGCGGGCCGAG GGAGCCCAGGATGGAGGTGGCGGTAGCGGCGGCGGGCCGAG < 41bp 0.474308367868824 0.780576107271071 0.8918977 0.9115102 prediction 0.561152214542142 Functional Gain - DAGLA ENSG00000134780 UTR5 Human protein_coding chr11:61447938 chr11:61447942 . . 0 25 hm5C_associated_SNPs_103742 0 0 0 0 1 Endoplasmic reticulum 0.500231643921064 0.500231643921097 0.0392250000000001 6.61692922676593e-14 hm5C_site_56887 DeepMRMD:0.0392250000000001;iRNA_m5C:6.61692922676593e-14 56888 chr1 75596161 75596161 1 + C A LUAD 75596157 + 75596137 75596177 41 GCCAGTGGATTCCCGGGTGTCCCGCGTGGAGCAGGCTTGCC GCCAGTGGATTCCCGGGTGTCCCGAGTGGAGCAGGCTTGCC < 41bp 0.465175766921212 0.780573578732756 0.6878729 0.7885445 prediction 0.561147157465512 Functional Gain - LHX8 ENSG00000224149 ncRNA_exonic Human antisense chr1:75596157 chr1:75596161 . . 0 25 hm5C_associated_SNPs_103743 0 0 0 0 0 exosome 0.500231643921091 0.500231650164786 0.2013432 1.24873902329625e-08 hm5C_site_56888 DeepMRMD:0.2013432;iRNA_m5C:1.24873902329625e-08 56889 chr16 678264 678264 1 + C G rs11548189 678260 + 678240 678280 41 AGGGGAGAAAGGAGGTGCACCTGGCAGCCCACATTTTTGTT AGGGGAGAAAGGAGGTGCACCTGGGAGCCCACATTTTTGTT < 41bp 0.506652172063847 0.787224306606104 0.426783 0.67292976 prediction 0.561144269084515 Functional Gain - RAB40C ENSG00000197562 UTR3 Human protein_coding chr16:678260 chr16:678264 . . 0 25 hm5C_associated_SNPs_103744 0 0 1 1 0 Ribosome 0.500231643969638 0.500231643921186 0.34585952 0 hm5C_site_56889 DeepMRMD:0.34585952;iRNA_m5C:0 56890 chr12 12588662 12588662 1 + T C STAD 12588660 + 12588640 12588680 41 TCCGATATCAAGATCACCTGCATCAGTGTGCAGAGGCCGTT TCCGATATCAAGATCACCTGCACCAGTGTGCAGAGGCCGTT < 41bp 0.509627658417929 0.790192408145952 0.076601356 0.07176587 prediction 0.561129499456046 Functional Gain - BORCS5 ENSG00000165714 CDS Human protein_coding chr12:12588660 chr12:12588662 synonymous SNV . 0 23 hm5C_associated_SNPs_103745 0 0 1 0 1 insoluble cytoplasm 0.500231644759413 0.500231639089454 0 0 hm5C_site_56890 DeepMRMD:0;iRNA_m5C:0 56891 chr11 56756945 56756945 1 + C A SARC 56756941 + 56756921 56756961 41 TCTGTGATGTTCCCCCTATTCTTGCTCTTTCATGCTCCAAT TCTGTGATGTTCCCCCTATTCTTGATCTTTCATGCTCCAAT < 41bp 0.40452348571192 0.780561531104971 0.04059398 0.017858624 prediction 0.561123062209942 Functional Gain - OR5AK2 ENSG00000181273 CDS Human protein_coding chr11:56756941 chr11:56756945 nonsynonymous SNV 0.215 2 25 hm5C_associated_SNPs_103746 0 0 0 0 0 unknown 0.500231677346015 0.500231686634117 0 1.85762041304827e-08 hm5C_site_56891 DeepMRMD:0;iRNA_m5C:1.85762041304827e-08 56892 chr3 142840524 142840524 1 + C A rs200061252 142840520 + 142840500 142840540 41 AGAAGTGCCCGCCACAGCGCCTGGCGCGTTTCGAGGAGGAG AGAAGTGCCCGCCACAGCGCCTGGAGCGTTTCGAGGAGGAG < 41bp 0.376532633331135 0.780559135925502 0.29658347 0.345307 prediction 0.561118271851004 Functional Gain - CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840520 chr3:142840524 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_103747 0 0 0 0 0 cytosol 0.500231785926199 0.500231642515377 0 0 hm5C_site_56892 DeepMRMD:0;iRNA_m5C:0 56893 chr5 140559237 140559237 1 + C A UCEC 140559233 + 140559213 140559253 41 GCGCTTCAGACCGCGGCTCCCCGGCTTTGAGCAGCGAGGCG GCGCTTCAGACCGCGGCTCCCCGGATTTGAGCAGCGAGGCG < 41bp 0.613720755659759 0.894276658130764 0.33743733 0.63722163 prediction 0.56111180494201 Functional Gain - PCDHB8 ENSG00000120322 CDS Human protein_coding chr5:140559233 chr5:140559237 nonsynonymous SNV 0.003 3 25 hm5C_associated_SNPs_103748 0 0 0 0 0 exosome 0.50023164382951 0.500231538405212 0.27444326 0 hm5C_site_56893 DeepMRMD:0.27444326;iRNA_m5C:0 56894 chr21 46021677 46021677 1 + T G rs370520219 46021675 + 46021655 46021695 41 CTCCTTAAGATCATCCAAAGCCTGAGTGCTCACTGCCACCT CTCCTTAAGATCATCCAAAGCCGGAGTGCTCACTGCCACCT < 41bp 0.550866045387602 0.831404368972403 0.113711655 0.85619843 prediction 0.561076647169603 Functional Gain - KRTAP10-7 ENSG00000205441 UTR3 Human other chr21:46021675 chr21:46021677 . . 0 23 hm5C_associated_SNPs_103749 0 0 0 4 0 unknown 0.500231643921092 0.500231643921092 0.71239686 0 hm5C_site_56894 DeepMRMD:0.71239686;iRNA_m5C:0 56895 chr9 80921376 80921376 1 + C A SKCM 80921372 + 80921352 80921392 41 GTTTGTGACATGTCCTCAAACTTCCTGTCCAAGCCAGTGGA GTTTGTGACATGTCCTCAAACTTCATGTCCAAGCCAGTGGA < 41bp 0.35069057577371 0.78051600451102 0.028300405 0.05632183 prediction 0.56103200902204 Functional Gain - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80921372 chr9:80921376 nonsynonymous SNV 0.952 3 25 hm5C_associated_SNPs_103750 0 0 1 0 1 Ribosome 0.500231643924179 0.500231724938899 0 1.62029440309297e-07 hm5C_site_56895 DeepMRMD:0;iRNA_m5C:1.62029440309297e-07 56896 chr19 8431177 8431177 1 + C G LUSC 8431176 + 8431156 8431196 41 AGATGGCCCAGCCAGTTGACCCGGCTCACAATGTCAGCCGC AGATGGCCCAGCCAGTTGACCGGGCTCACAATGTCAGCCGC < 41bp 0.470682110495454 0.78050671917139 0.32514495 0.77016604 prediction 0.56101343834278 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8431176 chr19:8431177 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_103751 0 0 0 0 2 Cytosol 0.500240658336901 0.500231644191631 0.54033208 0 hm5C_site_56896 DeepMRMD:0.54033208;iRNA_m5C:0 56897 chr10 15091670 15091670 1 + T G GBM 15091668 + 15091648 15091688 41 TCAACTGCTTATACAAAAACCCTGAGGCAACTTTTAAGCTG TCAACTGCTTATACAAAAACCCGGAGGCAACTTTTAAGCTG < 41bp 0.45384940693902 0.780502009976793 0.101376235 0.32414412 prediction 0.561004019953587 Functional Gain - OLAH ENSG00000152463 CDS Human protein_coding chr10:15091668 chr10:15091670 synonymous SNV . 0 23 hm5C_associated_SNPs_103752 0 0 0 0 2 exosome 0.500231643921064 0.500231638330111 0 0 hm5C_site_56897 DeepMRMD:0;iRNA_m5C:0 56898 chr12 69145967 69145967 1 + T A UCEC 69145963 + 69145943 69145983 41 ATTTGGTCCCTGGTCAGTTTCTGCTTTGGTAAGTTCTAATT ATTTGGTCCCTGGTCAGTTTCTGCATTGGTAAGTTCTAATT < 41bp 0.575258784668499 0.855750122931559 0.06798428 0.2337228 prediction 0.560982676526121 Functional Gain - SLC35E3 ENSG00000175782 CDS Human protein_coding chr12:69145963 chr12:69145967 synonymous SNV . 0 25 hm5C_associated_SNPs_103753 0 0 1 0 1 nucleolus 0.500231643921092 0.500231643921089 0 0 hm5C_site_56898 DeepMRMD:0;iRNA_m5C:0 56899 chr1 57340647 57340647 1 + C G ESCA 57340643 + 57340623 57340663 41 ACCGACACCGGAGCCTCTTGCAGCCAAACAAGTTTGGGGGA ACCGACACCGGAGCCTCTTGCAGCGAAACAAGTTTGGGGGA < 41bp 0.496464477355958 0.780487982972838 0.88660777 0.8948544 prediction 0.560975965945677 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57340643 chr1:57340647 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_103754 0 0 1 0 1 cytosol 0.500231639605625 0.500231643923994 0.0164932600000001 8.63673754736283e-09 hm5C_site_56899 DeepMRMD:0.0164932600000001;iRNA_m5C:8.63673754736283e-09 56900 chr16 2868811 2868811 1 + C A STAD 2868807 + 2868787 2868827 41 AATATCTATCTGAGCCCTCGCTACCTGGGGAATTCACCCTA AATATCTATCTGAGCCCTCGCTACATGGGGAATTCACCCTA < 41bp 0.356744184024579 0.780474874944906 0.084112555 0.8919641 prediction 0.560949749889813 Functional Gain - PRSS21 ENSG00000007038 CDS Human protein_coding chr16:2868807 chr16:2868811 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_103755 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0.7839282 0 hm5C_site_56900 DeepMRMD:0.7839282;iRNA_m5C:0 56901 chr5 154397063 154397063 1 + C A LUAD 154397059 + 154397039 154397079 41 CTCCAGGGAAGAAAAAGAAACGAGCTCTGGCTAGCAACACC CTCCAGGGAAGAAAAAGAAACGAGATCTGGCTAGCAACACC < 41bp 0.396642161428085 0.780462166043307 0.19531775 0.5141096 prediction 0.560924332086615 Functional Gain - KIF4B ENSG00000226650 CDS Human protein_coding chr5:154397059 chr5:154397063 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_103756 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0282192000000001 0 hm5C_site_56901 DeepMRMD:0.0282192000000001;iRNA_m5C:0 56902 chr13 111806285 111806285 1 + C G rs139490439 111806284 + 111806264 111806304 41 CCCCGGAGCGAGAGCGAGTGCCTGAGCAACATCCGCGAGTT CCCCGGAGCGAGAGCGAGTGCGTGAGCAACATCCGCGAGTT < 41bp 0.493698815456019 0.780447565175641 0.6311648 0.7494279 prediction 0.560895130351282 Functional Gain - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111806284 chr13:111806285 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_103757 0 0 1 0 2 Nucleus 0.50023164394814 0.500231643921222 0.2365262 0 hm5C_site_56902 DeepMRMD:0.2365262;iRNA_m5C:0 56903 chr3 183882129 183882129 1 + T A rs142016012 183882125 + 183882105 183882145 41 TAACCCATCGGAGCTGCCACCACCTATGGAGCGCACGGGAG TAACCCATCGGAGCTGCCACCACCAATGGAGCGCACGGGAG < 41bp 0.449524788590964 0.780438356871035 0.34089974 0.5704305 prediction 0.56087671374207 Functional Gain - DVL3 ENSG00000161202 CDS Human protein_coding chr3:183882125 chr3:183882129 synonymous SNV . 0 25 hm5C_associated_SNPs_103758 0 0 1 0 2 Cytosol 0.500231642762023 0.500231642649288 0.140861 0 hm5C_site_56903 DeepMRMD:0.140861;iRNA_m5C:0 56904 chr2 71188076 71188076 1 + C A LIHC 71188072 + 71188052 71188092 41 TTGCCGCTCAGATCTGCCGCCAGGCGGGGCTGGTGAAGAAG TTGCCGCTCAGATCTGCCGCCAGGAGGGGCTGGTGAAGAAG < 41bp 0.37585412183188 0.780437465932581 0.8644347 0.8384944 prediction 0.560874931865162 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71188072 chr2:71188076 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_103759 0 0 0 0 2 Endoplasmic reticulum 0.500231643921931 0.500231643921567 0 0 hm5C_site_56904 DeepMRMD:0;iRNA_m5C:0 56905 chrX 117883649 117883649 1 + T G SARC 117883647 + 117883627 117883667 41 CTGAGTCTGCTGTGACTGAGCTTCAATGCATTTGGCACAAC CTGAGTCTGCTGTGACTGAGCTGCAATGCATTTGGCACAAC < 41bp 0.570218833636638 0.850652344492791 0.07562697 0.13714752 prediction 0.560867021712306 Functional Gain - IL13RA1 ENSG00000131724 CDS Human protein_coding chrX:117883647 chrX:117883649 synonymous SNV . 0 23 hm5C_associated_SNPs_103760 0 0 1 0 2 Endoplasmic reticulum 0.500236739064327 0.500151916006014 0 0 hm5C_site_56905 DeepMRMD:0;iRNA_m5C:0 56906 chr4 24802205 24802205 1 + C A rs800447 24802201 + 24802181 24802221 41 CCCCATAAGCCCTGAGACTCCCGCCTTTGACCTGACGATCT CCCCATAAGCCCTGAGACTCCCGCATTTGACCTGACGATCT < 41bp 0.433829814248406 0.780423766341192 0.052550793 0.12938294 prediction 0.560847532682384 Functional Gain - SOD3 ENSG00000109610 UTR3 Human protein_coding chr4:24802201 chr4:24802205 . . 0 25 hm5C_associated_SNPs_103761 0 0 0 0 0 Endoplasmic reticulum 0.500231710652428 0.500231640621648 0 0 hm5C_site_56906 DeepMRMD:0;iRNA_m5C:0 56907 chr5 180258113 180258113 1 + C A rs1872182 180258109 + 180258089 180258129 41 GGCTTTGGGCTGTGGAAACGCTGCCTCTGTGGAAGTCTCTC GGCTTTGGGCTGTGGAAACGCTGCATCTGTGGAAGTCTCTC < 41bp 0.416880537756117 0.780413560867234 0.29269758 0.35457456 prediction 0.560827121734469 Functional Gain - HEIH;LINC00847 ENSG00000245060 ncRNA_exonic Human lincRNA chr5:180258109 chr5:180258113 . . 0 25 hm5C_associated_SNPs_103762 0 0 1 0 0 unknown 0.500231638104413 0.500104296165932 0 0 hm5C_site_56907 DeepMRMD:0;iRNA_m5C:0 56908 chr10 88992622 88992622 1 + C G rs200484233 88992621 + 88992601 88992641 41 CCTCGGGGCCACGGGGGAGCCCGAGAAACAACGGGAAGAGG CCTCGGGGCCACGGGGGAGCCGGAGAAACAACGGGAAGAGG < 41bp 0.541460935588284 0.821868559876961 0.8331181 0.909307 prediction 0.560815248577355 Functional Gain - NUTM2A ENSG00000184923 CDS Human protein_coding chr10:88992621 chr10:88992622 synonymous SNV . 0 22 hm5C_associated_SNPs_103763 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.1523778 0 hm5C_site_56908 DeepMRMD:0.1523778;iRNA_m5C:0 56909 chr18 8793060 8793060 1 + T A PRAD 8793056 + 8793036 8793076 41 TAGAGGAGCTACAGGGTCAGCTCGTGCAGGCGGCCAGACTG TAGAGGAGCTACAGGGTCAGCTCGAGCAGGCGGCCAGACTG < 41bp 0.462062532944717 0.780399304065881 0.16077065 0.4416284 prediction 0.560798608131762 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8793056 chr18:8793060 nonsynonymous SNV 0.157 0 25 hm5C_associated_SNPs_103764 0 0 0 0 2 Nucleus 0.500231643885396 0.500231643886792 0 2.79176681772242e-12 hm5C_site_56909 DeepMRMD:0;iRNA_m5C:2.79176681772242e-12 56910 chr7 92078110 92078110 1 + T G UCEC 92078107 + 92078087 92078127 41 AGGTCTGCTCGGCTCAGAAACACTAAATACAAATCTGCTCC AGGTCTGCTCGGCTCAGAAACACGAAATACAAATCTGCTCC < 41bp 0.617331147723667 0.897726618995065 0.24464396 0.43249533 prediction 0.560790942542797 Functional Gain - GATAD1 ENSG00000157259 CDS Human protein_coding chr7:92078107 chr7:92078110 synonymous SNV . 0 24 hm5C_associated_SNPs_103765 0 0 1 0 1 Ribosome 0.500231643920865 0.500231640908264 0 0 hm5C_site_56910 DeepMRMD:0;iRNA_m5C:0 56911 chr17 7324852 7324852 1 + C G rs34333422 7324851 + 7324831 7324871 41 GGCCCTGTCCGGCTGCTACCCCCTAGCCTCTGGATCCAGCA GGCCCTGTCCGGCTGCTACCCGCTAGCCTCTGGATCCAGCA < 41bp 0.482297282298016 0.780394107265609 0.26313317 0.34248465 prediction 0.560788214531218 Functional Gain - SPEM1 ENSG00000181323 CDS Human protein_coding chr17:7324851 chr17:7324852 synonymous SNV . 0 22 hm5C_associated_SNPs_103766 0 0 0 0 0 exosome 0.500231643921096 0.500231643921092 0 0 hm5C_site_56911 DeepMRMD:0;iRNA_m5C:0 56912 chr6 74073397 74073397 1 + C G rs139884562 74073396 + 74073376 74073416 41 GGAGGTCCGGGAGGCCGGGACCCAGCGTTCGGTGGAAGTCC GGAGGTCCGGGAGGCCGGGACGCAGCGTTCGGTGGAAGTCC < 41bp 0.535187291135549 0.815572927600361 0.38627663 0.7149884 prediction 0.560771272929624 Functional Gain - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74073396 chr6:74073397 synonymous SNV . 0 22 hm5C_associated_SNPs_103767 0 0 0 0 0 unknown 0.500231643965985 0.50023172022973 0.4299768 1.52527489305498e-07 hm5C_site_56912 DeepMRMD:0.4299768;iRNA_m5C:1.52527489305498e-07 56913 chr3 13612327 13612327 1 + C G rs199776248 13612326 + 13612306 13612346 41 ACTGTTCACCTGCCGCCCTGCCGGGCCTGCCACTGCCCTGA ACTGTTCACCTGCCGCCCTGCGGGGCCTGCCACTGCCCTGA < 41bp 0.555089071400888 0.83546371087848 0.8522534 0.91050386 prediction 0.560749278955184 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13612326 chr3:13612327 nonsynonymous SNV 0.122 0 22 hm5C_associated_SNPs_103768 0 0 0 0 0 Endoplasmic reticulum 0.50023164392114 0.500231643921092 0.11650092 0 hm5C_site_56913 DeepMRMD:0.11650092;iRNA_m5C:0 56914 chr9 90501363 90501363 1 + T A LUAD 90501359 + 90501339 90501379 41 GATTGCAGGCATCTGGGGACCTGCTACAGCCTGATGGGGAA GATTGCAGGCATCTGGGGACCTGCAACAGCCTGATGGGGAA < 41bp 0.549194779801925 0.829552727663272 0.37326849 0.75633854 prediction 0.560715895722695 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90501359 chr9:90501363 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103769 0 0 0 0 0 exosome 0.500231643921094 0.500231643921126 0.51267708 6.43929354282591e-14 hm5C_site_56914 DeepMRMD:0.51267708;iRNA_m5C:6.43929354282591e-14 56915 chrX 37028594 37028594 1 + C A LUSC 37028590 + 37028570 37028610 41 AGACTGGAGTGTCCCGTCTCCACCCAGAGCCTCCCAAGACT AGACTGGAGTGTCCCGTCTCCACCAAGAGCCTCCCAAGACT < 41bp 0.371441262703648 0.780357209257547 0.14310896 0.109208256 prediction 0.560714418515093 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37028590 chrX:37028594 nonsynonymous SNV 0.025 2 25 hm5C_associated_SNPs_103770 0 0 0 0 0 unknown 0.500234675190566 0.500231643918659 0 0 hm5C_site_56915 DeepMRMD:0;iRNA_m5C:0 56916 chr1 161641338 161641338 1 + C A LUAD 161641334 + 161641314 161641354 41 ATCTCATTCCCACCCACACGCAGCCCAGCTACAGGTTCAAG ATCTCATTCCCACCCACACGCAGCACAGCTACAGGTTCAAG < 41bp 0.371677372646418 0.780342103612503 0.08034405 0.08919361 prediction 0.560684207225007 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161641334 chr1:161641338 nonsynonymous SNV 0.074 3 25 hm5C_associated_SNPs_103771 0 0 0 0 0 Endoplasmic reticulum 0.500231643921093 0.500231620296303 0 0 hm5C_site_56916 DeepMRMD:0;iRNA_m5C:0 56917 chr11 19170823 19170823 1 + T A LIHC 19170819 + 19170799 19170839 41 GAGAGGGATTCAGCAGCATCCACCTGGCAGTATTGTTTCAA GAGAGGGATTCAGCAGCATCCACCAGGCAGTATTGTTTCAA < 41bp 0.575351634087222 0.855677134675177 0.08205652 0.10424349 prediction 0.56065100117591 Functional Gain - ZDHHC13 ENSG00000177054 CDS Human protein_coding chr11:19170819 chr11:19170823 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_103772 0 0 1 0 2 Nucleus 0.500231185272781 0.500231608796761 0 8.47047959329217e-07 hm5C_site_56917 DeepMRMD:0;iRNA_m5C:8.47047959329217e-07 56918 chr1 44595708 44595708 1 + C G rs7524274 44595707 + 44595687 44595727 41 CCCATTTCTACCAGAGCAGCCCGGACCTGCTCCACAGACAG CCCATTTCTACCAGAGCAGCCGGGACCTGCTCCACAGACAG < 41bp 0.480764234905951 0.780305643028729 0.13578442 0.4027118 prediction 0.560611286057457 Functional Gain - KLF17 ENSG00000171872 CDS Human protein_coding chr1:44595707 chr1:44595708 synonymous SNV . 0 22 hm5C_associated_SNPs_103773 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_56918 DeepMRMD:0;iRNA_m5C:0 56919 chr10 18828215 18828215 1 + A T BRCA 18828219 - 18828199 18828239 41 TTCCACACTAGGTTCTTCTTCAGCTTGGGAAGCAGAACGGA TTCCACACTAGGTTCTTCTTCAGCATGGGAAGCAGAACGGA < 41bp 0.474716431736377 0.780295507709866 0.4147226 0.2960289 prediction 0.560591015419732 Functional Gain - CACNB2 ENSG00000165995 CDS Human protein_coding chr10:18828219 chr10:18828215 nonsynonymous SNV 0.976 2 25 hm5C_associated_SNPs_103774 0 0 1 0 2 chromatin 0.500231643940077 0.500231643921365 0 0 hm5C_site_56919 DeepMRMD:0;iRNA_m5C:0 56920 chr16 29096539 29096539 1 + C G LUSC 29096538 + 29096518 29096558 41 TTTTCTTTTTCCCTCAAAAGCCCGAGTGATCATTAAGGAAG TTTTCTTTTTCCCTCAAAAGCGCGAGTGATCATTAAGGAAG < 41bp 0.502605847682659 0.782858043850367 0.40942377 0.43371263 prediction 0.560504392335415 Functional Gain - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29096538 chr16:29096539 . . 0 22 hm5C_associated_SNPs_103775 0 0 0 0 2 unknown 0.500231643097433 0.500231572708081 0 0 hm5C_site_56920 DeepMRMD:0;iRNA_m5C:0 56921 chr20 49196284 49196284 1 + C A rs2230604 49196280 + 49196260 49196300 41 CCACGAGGACCTGGAGCCCCCACCCGAGCATATCCCCCCAC CCACGAGGACCTGGAGCCCCCACCAGAGCATATCCCCCCAC < 41bp 0.641006825654699 0.921232558184105 0.11233395 0.20895472 prediction 0.560451465058812 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49196280 chr20:49196284 synonymous SNV . 0 25 hm5C_associated_SNPs_103776 0 0 1 0 1 Ribosome 0.500231643921137 0.500231643920708 0 0 hm5C_site_56921 DeepMRMD:0;iRNA_m5C:0 56922 chrX 2670373 2670373 1 + C A BLCA 2670369 + 2670349 2670389 41 TTCCTGTGTTTTCTAATGCACGCCCGAGGTAAGAGGCATTT TTCCTGTGTTTTCTAATGCACGCCAGAGGTAAGAGGCATTT < 41bp 0.389800101010318 0.780223238510084 0.095472574 0.3435602 prediction 0.560446477020168 Functional Gain - XG ENSG00000124343 CDS Human protein_coding chrX:2670369 chrX:2670373 synonymous SNV . 0 25 hm5C_associated_SNPs_103777 0 0 0 0 1 exosome 0.500231643921092 0.500231673133852 0 5.84255190894112e-08 hm5C_site_56922 DeepMRMD:0;iRNA_m5C:5.84255190894112e-08 56923 chr1 175046673 175046673 1 + T A ACC 175046669 + 175046649 175046689 41 GCTGCAGCAACAAGGAGCAACAGGTCACTGTCAGCCACACC GCTGCAGCAACAAGGAGCAACAGGACACTGTCAGCCACACC < 41bp 0.541528295043439 0.821742810869414 0.4827477 0.5884325 prediction 0.560429031651949 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175046669 chr1:175046673 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_103778 0 0 0 0 0 exosome 0.500232615197011 0.500231751130759 0.176865 0 hm5C_site_56923 DeepMRMD:0.176865;iRNA_m5C:0 56924 chr11 125365389 125365389 1 + C A rs112564147 125365385 + 125365365 125365405 41 GCCGCCCCGGTCCCTTCTCCCGCCCGTCTGTAGTAAAACAA GCCGCCCCGGTCCCTTCTCCCGCCAGTCTGTAGTAAAACAA < 41bp 0.610617412727811 0.89082399383183 0.0887354 0.41857713 prediction 0.560413162208038 Functional Gain - LOC403312 ENSG00000255537 CDS Human antisense chr11:125365385 chr11:125365389 synonymous SNV . 0 25 hm5C_associated_SNPs_103779 0 0 0 0 0 unknown 0.500231643921096 0.500231644768016 0 1.69384084536262e-09 hm5C_site_56924 DeepMRMD:0;iRNA_m5C:1.69384084536262e-09 56925 chr16 21739682 21739682 1 + C A UCEC 21739678 + 21739658 21739698 41 GCTTGGGCGACTGCTCTACACGGCCTCAGAGACTGCCCAGA GCTTGGGCGACTGCTCTACACGGCATCAGAGACTGCCCAGA < 41bp 0.633090751384832 0.913289533910106 0.04146424 0.036123723 prediction 0.560397565050549 Functional Gain - OTOA ENSG00000155719 CDS Human protein_coding chr16:21739678 chr16:21739682 nonsynonymous SNV 0.313 1 25 hm5C_associated_SNPs_103780 0 0 0 0 1 exosome 0.500231644003127 0.500231643921092 0 0 hm5C_site_56925 DeepMRMD:0;iRNA_m5C:0 56926 chr7 139719913 139719913 1 + C G rs200404222 139719912 + 139719892 139719932 41 CCCGCTGACACAGAAGGCTGCCGGGTGGGGGGAGGGCACCC CCCGCTGACACAGAAGGCTGCGGGGTGGGGGGAGGGCACCC < 41bp 0.535599047926258 0.815794384915389 0.5698465 0.89347446 prediction 0.560390673978261 Functional Gain - TBXAS1 ENSG00000059377 UTR3 Human protein_coding chr7:139719912 chr7:139719913 . . 0 22 hm5C_associated_SNPs_103781 0 0 0 0 1 Endoplasmic reticulum 0.500231643921086 0.500231643921092 0.64725592 1.22124532708767e-14 hm5C_site_56926 DeepMRMD:0.64725592;iRNA_m5C:1.22124532708767e-14 56927 chr1 17657607 17657607 1 + C G rs35809521 17657603 + 17657583 17657623 41 ACCCTGGGGTAGAGGTGACCCTGACGATGAAAGTGGCCAGT ACCCTGGGGTAGAGGTGACCCTGAGGATGAAAGTGGCCAGT < 41bp 0.525410804733925 0.805601226709218 0.13612351 0.1493102 prediction 0.560380843950586 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17657603 chr1:17657607 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103782 0 0 0 0 1 exosome 0.50023176782544 0.500233714735166 0 3.89381945264944e-06 hm5C_site_56927 DeepMRMD:0;iRNA_m5C:3.89381945264944e-06 56928 chr16 67209221 67209221 1 + C A rs75280012 67209217 + 67209197 67209237 41 ATCCAGTCCTCAGCCCTAATCTGCCCTTAGGAGTCCAGGCT ATCCAGTCCTCAGCCCTAATCTGCACTTAGGAGTCCAGGCT < 41bp 0.40655975704485 0.780162189175248 0.3005141 0.30796355 prediction 0.560324378350497 Functional Gain - NOL3 ENSG00000140939 UTR3 Human protein_coding chr16:67209217 chr16:67209221 . . 0 25 hm5C_associated_SNPs_103783 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56928 DeepMRMD:0;iRNA_m5C:0 56929 chr15 31119964 31119964 1 + C A rs531136295 31119960 + 31119940 31119980 41 TGGAGGATGTGGCCACAAGACTTGCAGAGCGGCCGCCTCTC TGGAGGATGTGGCCACAAGACTTGAAGAGCGGCCGCCTCTC < 41bp 0.607679452186164 0.887839065439367 0.13636294 0.13158357 prediction 0.560319226506407 Functional Gain - HERC2P10 ENSG00000259845 ncRNA_splicing Human unprocessed_pseudogene chr15:31119960 chr15:31119964 . . 0 25 hm5C_associated_SNPs_103784 0 0 0 0 1 unknown 0.500231643921092 0.500231643920796 0 0 hm5C_site_56929 DeepMRMD:0;iRNA_m5C:0 56930 chr19 9650079 9650079 1 + C G rs140083868 9650078 + 9650058 9650098 41 TGTCACCTGCACGTATACATCCAGATGGCCTGGAGCAACTG TGTCACCTGCACGTATACATCGAGATGGCCTGGAGCAACTG < 41bp 0.494614063930693 0.780155456539973 0.9109981 0.92484653 prediction 0.560310913079947 Functional Gain - LOC101928238 ENSG00000130818 upstream Human protein_coding chr19:9650078 chr19:9650079 . . 0 22 hm5C_associated_SNPs_103785 0 0 0 0 0 unknown 0.500232112857736 0.499790844179686 0.0276968599999998 0 hm5C_site_56930 DeepMRMD:0.0276968599999998;iRNA_m5C:0 56931 chr7 30795436 30795436 1 + T G rs4720015 30795434 + 30795414 30795454 41 GCTGCCAACAATGGGGTCTGCTTCATTGTGGCTCGCAAGAA GCTGCCAACAATGGGGTCTGCTGCATTGTGGCTCGCAAGAA < 41bp 0.570636570765104 0.850791563460248 0.39171046 0.55367965 prediction 0.560309985390288 Functional Gain - INMT ENSG00000241644 CDS Human protein_coding chr7:30795434 chr7:30795436 nonsynonymous SNV 0.485 2 23 hm5C_associated_SNPs_103786 0 0 0 0 0 Nucleus 0.500231666376809 0.500231657033134 0.1073593 0 hm5C_site_56931 DeepMRMD:0.1073593;iRNA_m5C:0 56932 chr15 73832859 73832859 1 + T A OV 73832855 + 73832835 73832875 41 TCACTCATTGGTAGCAAGGACTGGTTGAAGATTGTAAGACG TCACTCATTGGTAGCAAGGACTGGATGAAGATTGTAAGACG < 41bp 0.462684453024825 0.780152653015579 0.29318523 0.37713653 prediction 0.560305306031158 Functional Gain - REC114 ENSG00000183324 CDS Human protein_coding chr15:73832855 chr15:73832859 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103787 0 0 0 0 1 Cytosol 0.500233372088362 0.500231738290271 0 0 hm5C_site_56932 DeepMRMD:0;iRNA_m5C:0 56933 chr11 4661904 4661904 1 + T A COAD 4661900 + 4661880 4661920 41 TTATGGCTAATACCTACTTGCTGCTACCACCTGTAGTCAAC TTATGGCTAATACCTACTTGCTGCAACCACCTGTAGTCAAC < 41bp 0.476999670304849 0.780128295548009 0.11222416 0.15790686 prediction 0.560256591096018 Functional Gain - OR51D1 ENSG00000197428 CDS Human protein_coding chr11:4661900 chr11:4661904 nonsynonymous SNV 0.230 3 25 hm5C_associated_SNPs_103788 0 0 0 0 0 unknown 0.500231643921104 0.500231643921281 0 3.54161144855425e-13 hm5C_site_56933 DeepMRMD:0;iRNA_m5C:3.54161144855425e-13 56934 chrX 40450585 40450585 1 + C G rs9014 40450584 + 40450564 40450604 41 GTGAACAAACTGGCTCTACCCCCAGGCAGTGTCATTTCGTA GTGAACAAACTGGCTCTACCCGCAGGCAGTGTCATTTCGTA < 41bp 0.510456176507021 0.790584073924963 0.27540165 0.6525952 prediction 0.560255794835884 Functional Gain - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40450584 chrX:40450585 nonsynonymous SNV 0.910 0 22 hm5C_associated_SNPs_103789 1 0 1 1 2 Ribosome 0.500231643921091 0.500231643827296 0.3051904 0 hm5C_site_56934 DeepMRMD:0.3051904;iRNA_m5C:0 not specified not specified 56935 chr5 150632814 150632814 1 + C A COAD 150632810 + 150632790 150632830 41 ATGCAGGCTCCCCTCCTGATCGCCCTGGGCTTGCTTCTCGC ATGCAGGCTCCCCTCCTGATCGCCATGGGCTTGCTTCTCGC < 41bp 0.623820233839963 0.903933190514206 0.14435732 0.8629136 prediction 0.560225913348486 Functional Gain - GM2A ENSG00000196743 CDS Human protein_coding chr5:150632810 chr5:150632814 nonsynonymous SNV 0.005 2 25 hm5C_associated_SNPs_103790 0 0 1 0 1 Endoplasmic reticulum 0.500231642292722 0.500231641956162 0.7258272 0 hm5C_site_56935 DeepMRMD:0.7258272;iRNA_m5C:0 56936 chr12 8672897 8672897 1 + T G OV 8672894 + 8672874 8672914 41 GAGATGAGAATGCCAAAGGTCAGTGGCGTTGGGTGGACCAG GAGATGAGAATGCCAAAGGTCAGGGGCGTTGGGTGGACCAG < 41bp 0.61946108647722 0.899565597751137 0.3558671 0.9365722 prediction 0.560209022547833 Functional Gain - CLEC4D ENSG00000166527 CDS Human protein_coding chr12:8672894 chr12:8672897 nonsynonymous SNV 0.137 3 24 hm5C_associated_SNPs_103791 0 0 0 0 1 exosome 0.500230872970325 0.500231643862587 0.8731444 1.54178452538289e-06 hm5C_site_56936 DeepMRMD:0.8731444;iRNA_m5C:1.54178452538289e-06 56937 chr6 127440410 127440410 1 + T A LUAD 127440406 + 127440386 127440426 41 GAATACATCGGCAGCCAAAACGCCTCCCGGGGAAGGCGCCA GAATACATCGGCAGCCAAAACGCCACCCGGGGAAGGCGCCA < 41bp 0.571439420778382 0.85152970003455 0.19581011 0.35340697 prediction 0.560180558512335 Functional Gain - RSPO3 ENSG00000146374 CDS Human protein_coding chr6:127440406 chr6:127440410 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_103792 0 0 0 0 1 exosome 0.500231647871754 0.500231741288868 0 1.86834227644539e-07 hm5C_site_56937 DeepMRMD:0;iRNA_m5C:1.86834227644539e-07 56938 chr7 1131451 1131451 1 + C G rs199734759 1131450 + 1131430 1131470 41 GGCCCCCAACACCACCTCCCCCGAGCTCAACCTGTCCCACC GGCCCCCAACACCACCTCCCCGGAGCTCAACCTGTCCCACC < 41bp 0.54105535762956 0.821143952983109 0.022093713 0.30657506 prediction 0.5601771907071 Functional Gain - GPER1 ENSG00000164850 CDS Human protein_coding chr7:1131450 chr7:1131451 synonymous SNV . 0 22 hm5C_associated_SNPs_103793 0 0 1 0 0 Cytosol 0.500231643921459 0.500231643921094 0 0 hm5C_site_56938 DeepMRMD:0;iRNA_m5C:0 56939 chr17 45376782 45376782 1 + T A LUAD 45376778 + 45376758 45376798 41 CCTGCATGTCCAGCAATGGGCTGCTGTGCAGCGGCCGCGGC CCTGCATGTCCAGCAATGGGCTGCAGTGCAGCGGCCGCGGC < 41bp 0.581900740805169 0.861983633091292 0.055396885 0.08719441 prediction 0.560165784572246 Functional Gain - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376778 chr17:45376782 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_103794 0 0 0 0 0 cytosol 0.500231645125639 0.500231889692051 0 4.89132824910143e-07 hm5C_site_56939 DeepMRMD:0;iRNA_m5C:4.89132824910143e-07 56940 chr15 22833544 22833544 1 + C G SKCM 22833543 + 22833523 22833563 41 ACATGGCGCGGCACGGGCCACCGTGGAGTCGGTTGGACGCG ACATGGCGCGGCACGGGCCACGGTGGAGTCGGTTGGACGCG < 41bp 0.529626092124667 0.809696669173513 0.40940365 0.7526813 prediction 0.560141154097691 Functional Gain - TUBGCP5 ENSG00000153575 CDS Human other chr15:22833543 chr15:22833544 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_103795 0 0 1 0 0 chromatin 0.50020966013102 0.500878243841632 0.5053626 0.00133716742122325 hm5C_site_56940 DeepMRMD:0.5053626;iRNA_m5C:0.00133716742122325 56941 chr15 40358313 40358313 1 + C G rs115835761 40358312 + 40358292 40358332 41 TTAAGAATAGGGAATACAGGCCGGGCACGGTGGCTCACACC TTAAGAATAGGGAATACAGGCGGGGCACGGTGGCTCACACC < 41bp 0.505710564431682 0.785767720795448 0.26630473 0.8512753 prediction 0.560114312727532 Functional Gain - SRP14-AS1 ENSG00000248508 ncRNA_exonic Human lincRNA chr15:40358312 chr15:40358313 . . 0 22 hm5C_associated_SNPs_103796 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.7025506 0 hm5C_site_56941 DeepMRMD:0.7025506;iRNA_m5C:0 56942 chr1 27662234 27662234 1 + C G rs190981142 27662233 + 27662213 27662253 41 TGTTGAAAGGCTTTGGCTTCCCGCTGTAGAGCTGCTCCCGC TGTTGAAAGGCTTTGGCTTCCGGCTGTAGAGCTGCTCCCGC < 41bp 0.514755849038504 0.79481185697732 0.40639454 0.9044517 prediction 0.560112015877633 Functional Gain - TMEM222 ENSG00000186501 UTR3 Human protein_coding chr1:27662233 chr1:27662234 . . 0 22 hm5C_associated_SNPs_103797 0 0 1 0 0 Ribosome 0.500231643921091 0.500231643920956 0.8089034 0 hm5C_site_56942 DeepMRMD:0.8089034;iRNA_m5C:0 56943 chr7 87459269 87459269 1 + T G STAD 87459266 + 87459246 87459286 41 GTCAGTGGCAAGTTACAAGTCTCTAACAAGCTTAAAATCTA GTCAGTGGCAAGTTACAAGTCTCGAACAAGCTTAAAATCTA < 41bp 0.439031302973257 0.780055655569302 0.93351823 0.3609138 prediction 0.560111311138604 Functional Gain - RUNDC3B ENSG00000105784 CDS Human protein_coding chr7:87459266 chr7:87459269 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_103798 0 0 0 0 1 chromatin 0.5002283777559 0.500232122494817 0 7.48947783302256e-06 hm5C_site_56943 DeepMRMD:0;iRNA_m5C:7.48947783302256e-06 56944 chr3 46621530 46621530 1 + A C LUSC 46621532 - 46621512 46621552 41 ACCACAGCCGGGTAGAAATGCCTGAGGAAAGCAGCGGAGCT ACCACAGCCGGGTAGAAATGCCGGAGGAAAGCAGCGGAGCT < 41bp 0.444692099588589 0.780031971262762 0.23124653 0.88827485 prediction 0.560063942525525 Functional Gain - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46621532 chr3:46621530 nonsynonymous SNV 0.556 5 23 hm5C_associated_SNPs_103799 0 0 0 0 0 Ribosome 0.500231643925727 0.500231643921095 0.7765497 0 hm5C_site_56944 DeepMRMD:0.7765497;iRNA_m5C:0 56945 chr20 45633610 45633610 1 + C A rs564717893 45633606 + 45633586 45633626 41 GCCCACGTGTCCTCCCCCGCCAGCCTTCCACAGCCATGGCA GCCCACGTGTCCTCCCCCGCCAGCATTCCACAGCCATGGCA < 41bp 0.367049655898751 0.780021470526274 0.083232045 0.18188992 prediction 0.560042941052549 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45633606 chr20:45633610 nonsynonymous SNV 0.022 2 25 hm5C_associated_SNPs_103800 0 0 0 0 1 Endoplasmic reticulum 0.500231643921013 0.500231650407072 0 1.29721167141383e-08 hm5C_site_56945 DeepMRMD:0;iRNA_m5C:1.29721167141383e-08 56946 chr19 10226051 10226051 1 + C A rs371268998 10226047 + 10226027 10226067 41 AAGGACTGTCCCCTCAAAACCAGCCGGGGGACTGTTAAATT AAGGACTGTCCCCTCAAAACCAGCAGGGGGACTGTTAAATT < 41bp 0.539054479067939 0.819075334063768 0.37886 0.5296289 prediction 0.560041709991657 Functional Gain - P2RY11;PPAN-P2RY11 ENSG00000130811 intronic Human protein_coding chr19:10226047 chr19:10226051 . . 0 25 hm5C_associated_SNPs_103801 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0.0592577999999999 0 hm5C_site_56946 DeepMRMD:0.0592577999999999;iRNA_m5C:0 56947 chr20 2732902 2732902 1 + C G rs2235813 2732901 + 2732881 2732921 41 CGGGGACGCCACCCCGGGGCCCGAGCCGGGTGCGTGGGCCG CGGGGACGCCACCCCGGGGCCGGAGCCGGGTGCGTGGGCCG < 41bp 0.501757732331722 0.781773569616798 0.20800078 0.92661357 prediction 0.560031674570152 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2732901 chr20:2732902 synonymous SNV . 0 22 hm5C_associated_SNPs_103802 0 0 0 0 1 exosome 0.500230406288859 0.50023171945561 0.85322714 2.62633350289754e-06 hm5C_site_56947 DeepMRMD:0.85322714;iRNA_m5C:2.62633350289754e-06 56948 chr12 16050876 16050876 1 + T G UCEC 16050874 + 16050854 16050894 41 TCAATTCTGCATCTCTTCATCCTGAGAAAGAATTTCTTGTT TCAATTCTGCATCTCTTCATCCGGAGAAAGAATTTCTTGTT < 41bp 0.469373698762725 0.780008930980618 0.18409577 0.9203881 prediction 0.560017861961237 Functional Gain - STRAP ENSG00000023734 CDS Human protein_coding chr12:16050874 chr12:16050876 synonymous SNV . 0 23 hm5C_associated_SNPs_103803 0 0 1 0 2 Ribosome 0.500231643928445 0.50023164294924 0.8407762 0 hm5C_site_56948 DeepMRMD:0.8407762;iRNA_m5C:0 56949 chr16 1034936 1034936 1 + C A rs112373912 1034932 + 1034912 1034952 41 GCCCCTGGGCGGCCCCGCCCCACCCGAGCCGGGCCAGGCCT GCCCCTGGGCGGCCCCGCCCCACCAGAGCCGGGCCAGGCCT < 41bp 0.626942833441168 0.906941788075791 0.2309964 0.21893713 prediction 0.559997909269246 Functional Gain - SOX8 ENSG00000005513 CDS Human protein_coding chr16:1034932 chr16:1034936 synonymous SNV . 0 25 hm5C_associated_SNPs_103804 0 0 0 0 0 exosome 0.500231643920592 0.500231643921092 0 9.99866855977416e-13 hm5C_site_56949 DeepMRMD:0;iRNA_m5C:9.99866855977416e-13 56950 chrX 140995680 140995680 1 + T A COAD 140995676 + 140995656 140995696 41 ATCGAGTCTTTCCCAGAGTTCTCCTGTGAGCTCCTTCCCCT ATCGAGTCTTTCCCAGAGTTCTCCAGTGAGCTCCTTCCCCT < 41bp 0.552423492346783 0.832418151537091 0.050815254 0.9428123 prediction 0.559989318380616 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140995676 chrX:140995680 synonymous SNV . 0 25 hm5C_associated_SNPs_103805 0 0 0 0 0 exosome 0.500231645598599 0.500231644210288 0.8856246 0 hm5C_site_56950 DeepMRMD:0.8856246;iRNA_m5C:0 56951 chr7 150217085 150217085 1 + C A BRCA 150217081 + 150217061 150217101 41 GCATGGCTGAGAGTGAGGACCGCTCCCTGAGGATCGTTCTG GCATGGCTGAGAGTGAGGACCGCTACCTGAGGATCGTTCTG < 41bp 0.386303409785572 0.779980068667091 0.17598185 0.3259995 prediction 0.559960137334181 Functional Gain - GIMAP7 ENSG00000179144 CDS Human protein_coding chr7:150217081 chr7:150217085 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_103806 0 0 0 0 1 exosome 0.500231647532875 0.500231637884571 0 0 hm5C_site_56951 DeepMRMD:0;iRNA_m5C:0 56952 chr4 48492546 48492546 1 + C A rs73144650 48492542 + 48492522 48492562 41 GCCGAGTACTTCGACAGCTACCAGCGGGAGCGGCTCATGGC GCCGAGTACTTCGACAGCTACCAGAGGGAGCGGCTCATGGC < 41bp 0.600769033683952 0.880735444080565 0.53977793 0.8927847 prediction 0.559932820793226 Functional Gain - ZAR1 ENSG00000182223 CDS Human protein_coding chr4:48492542 chr4:48492546 synonymous SNV . 0 25 hm5C_associated_SNPs_103807 0 0 0 0 0 unknown 0.50023164380638 0.500231643848404 0.70601354 8.40481018116179e-11 hm5C_site_56952 DeepMRMD:0.70601354;iRNA_m5C:8.40481018116179e-11 56953 chr19 7570448 7570448 1 + T G BLCA 7570446 + 7570426 7570466 41 CAGACTCCGGAGTCGCACATCCTGAAAGGAAATTGGTGCCC CAGACTCCGGAGTCGCACATCCGGAAAGGAAATTGGTGCCC < 41bp 0.438445479841044 0.779962948270993 0.12977552 0.37764624 prediction 0.559925896541986 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7570446 chr19:7570448 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_103808 0 0 0 0 1 unknown 0.500231643921076 0.500231643916786 0 0 hm5C_site_56953 DeepMRMD:0;iRNA_m5C:0 56954 chr1 171174690 171174690 1 + C A LUSC 171174686 + 171174666 171174706 41 CTCACCTGGACAAGTCAACCCTCGCGTGCATTGGTCTCATC CTCACCTGGACAAGTCAACCCTCGAGTGCATTGGTCTCATC < 41bp 0.636535065310672 0.916490546134245 0.08287349 0.39919677 prediction 0.559910961647146 Functional Gain - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171174686 chr1:171174690 nonsynonymous SNV 0.804 4 25 hm5C_associated_SNPs_103809 0 0 0 0 1 exosome 0.500231643921273 0.500231645375973 0 2.90940049829658e-09 hm5C_site_56954 DeepMRMD:0;iRNA_m5C:2.90940049829658e-09 56955 chr11 128680623 128680623 1 + C G CESC 128680622 + 128680602 128680642 41 TTTGACTTCCACGGCATTGCCCAGGCTCTGCAGCCACATCC TTTGACTTCCACGGCATTGCCGAGGCTCTGCAGCCACATCC < 41bp 0.47705890323106 0.779951007258285 0.2623041 0.8979522 prediction 0.55990201451657 Functional Gain - FLI1 ENSG00000151702 CDS Human protein_coding chr11:128680622 chr11:128680623 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_103810 0 0 0 0 0 Endoplasmic reticulum 0.500231643869663 0.500231643922687 0.7959044 1.06047171044565e-10 hm5C_site_56955 DeepMRMD:0.7959044;iRNA_m5C:1.06047171044565e-10 56956 chr4 169433261 169433261 1 + T G SKCM 169433258 + 169433238 169433278 41 GGGGAGTCCTCGTCACCAGACAGTGGGTACCTGTCTCCTAA GGGGAGTCCTCGTCACCAGACAGGGGGTACCTGTCTCCTAA < 41bp 0.408779949154422 0.779941476542646 0.31648102 0.90145594 prediction 0.559882953085292 Functional Gain - PALLD ENSG00000129116 CDS Human protein_coding chr4:169433258 chr4:169433261 nonsynonymous SNV 0.995 3 24 hm5C_associated_SNPs_103811 0 0 0 0 0 Cytosol 0.500231643949361 0.500231643921093 0.80291188 0 hm5C_site_56956 DeepMRMD:0.80291188;iRNA_m5C:0 56957 chr19 55494652 55494652 1 + C A rs113752373 55494648 + 55494628 55494668 41 AGGAAGAGGATAGGGACGGCCACACCTGGGACATTGGGGAC AGGAAGAGGATAGGGACGGCCACAACTGGGACATTGGGGAC < 41bp 0.366911541724706 0.779932088790574 0.57982904 0.24950504 prediction 0.559864177581149 Functional Gain - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55494648 chr19:55494652 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103812 0 0 0 0 0 Cytosol 0.500231643792968 0.50023164384902 0 1.1210454786692e-10 hm5C_site_56957 DeepMRMD:0;iRNA_m5C:1.1210454786692e-10 56958 chr21 27141470 27141470 1 + T A UCEC 27141466 + 27141446 27141486 41 AGAAGAAACTTGCAAAGATGCAGCTCCATGGAATTGCCCAG AGAAGAAACTTGCAAAGATGCAGCACCATGGAATTGCCCAG < 41bp 0.536122194376268 0.816042210406086 0.056209713 0.16181204 prediction 0.559840032059637 Functional Gain - GABPA ENSG00000154727 CDS Human protein_coding chr21:27141466 chr21:27141470 nonsynonymous SNV 0.939 2 25 hm5C_associated_SNPs_103813 0 0 0 0 0 Cytosol 0.500231643921093 0.500231643921092 0 0 hm5C_site_56958 DeepMRMD:0;iRNA_m5C:0 56959 chr2 171716263 171716263 1 + C A LUAD 171716259 + 171716239 171716279 41 CCTGATGATGGAGTCAGGTACGACCATGGTTGGCTACCAGC CCTGATGATGGAGTCAGGTACGACAATGGTTGGCTACCAGC < 41bp 0.379503713552361 0.779914557137565 0.28117493 0.35607785 prediction 0.559829114275129 Functional Gain - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171716259 chr2:171716263 synonymous SNV . 0 25 hm5C_associated_SNPs_103814 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921115 0 4.50750547997814e-14 hm5C_site_56959 DeepMRMD:0;iRNA_m5C:4.50750547997814e-14 56960 chr3 183954229 183954229 1 + C G rs73884900 183954228 + 183954208 183954248 41 GGACTGGGCCGTGGGGCAGCCCCAGCACAGGGCCTACCCTC GGACTGGGCCGTGGGGCAGCCGCAGCACAGGGCCTACCCTC < 41bp 0.468008091070148 0.779903551374236 0.19186151 0.25399846 prediction 0.559807102748471 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183954228 chr3:183954229 synonymous SNV . 0 22 hm5C_associated_SNPs_103815 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56960 DeepMRMD:0;iRNA_m5C:0 56961 chr1 12726497 12726497 1 + C A BLCA 12726493 + 12726473 12726513 41 TATGCTGGATGTAGAAAATTCACCCCTGATAGCAGATGATG TATGCTGGATGTAGAAAATTCACCACTGATAGCAGATGATG < 41bp 0.372113090171037 0.779889506856642 0.10722992 0.11411905 prediction 0.559779013713285 Functional Gain - AADACL4 ENSG00000204518 CDS Human protein_coding chr1:12726493 chr1:12726497 synonymous SNV . 0 25 hm5C_associated_SNPs_103816 0 0 0 0 0 chromatin 0.50023164392106 0.500231642184986 0 0 hm5C_site_56961 DeepMRMD:0;iRNA_m5C:0 56962 chr6 116600829 116600829 1 + C A UCEC 116600825 + 116600805 116600845 41 CGGTGGAGGCGGGAGCGCGACGGTCTCCGAGCCTCCCTCAC CGGTGGAGGCGGGAGCGCGACGGTATCCGAGCCTCCCTCAC < 41bp 0.424637110982564 0.779880201108294 0.78991574 0.8070972 prediction 0.559760402216588 Functional Gain - TSPYL1 ENSG00000189241 CDS Human protein_coding chr6:116600825 chr6:116600829 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_103817 0 0 0 0 1 Ribosome 0.50022986201405 0.500231643940365 0.03436292 3.56385263078351e-06 hm5C_site_56962 DeepMRMD:0.03436292;iRNA_m5C:3.56385263078351e-06 Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy) 56963 chr12 58018385 58018385 1 + C G rs540622978 58018384 + 58018364 58018404 41 ATGACTGTGGTCTGCCGCACCCGGAGGTGGGCATAGAGATG ATGACTGTGGTCTGCCGCACCGGGAGGTGGGCATAGAGATG < 41bp 0.546649102061725 0.82652399934887 0.81114995 0.8282974 prediction 0.559749794574289 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58018384 chr12:58018385 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_103818 0 0 0 0 1 chromatin 0.500231644365206 0.500231643462462 0.0342948999999999 0 hm5C_site_56963 DeepMRMD:0.0342948999999999;iRNA_m5C:0 56964 chr19 35760495 35760495 1 + C G LUAD 35760494 + 35760474 35760514 41 TCGGCCCCAGGCGGGGACGGCCCAGGAGCGGAGGAGCAGAC TCGGCCCCAGGCGGGGACGGCGCAGGAGCGGAGGAGCAGAC < 41bp 0.542088982678132 0.821962350442337 0.54937685 0.90011626 prediction 0.55974673552841 Functional Gain - USF2 ENSG00000105698 CDS Human protein_coding chr19:35760494 chr19:35760495 nonsynonymous SNV 0.957 1 22 hm5C_associated_SNPs_103819 0 0 1 0 0 Cytosol 0.500231649071765 0.500231643921092 0.70147882 0 hm5C_site_56964 DeepMRMD:0.70147882;iRNA_m5C:0 56965 chr10 104263972 104263972 1 + T A LUAD 104263968 + 104263948 104263988 41 CGCGCCCCCGGCCCCTGGCCCGACTGCCCCCCCGGCCTTCG CGCGCCCCCGGCCCCTGGCCCGACAGCCCCCCCGGCCTTCG < 41bp 0.546308565156403 0.826155625968294 0.25716352 0.23409918 prediction 0.559694121623781 Functional Gain - SUFU ENSG00000107882 CDS Human protein_coding chr10:104263968 chr10:104263972 synonymous SNV . 0 25 hm5C_associated_SNPs_103820 0 0 0 0 0 chromatin 0.500231643921087 0.50023164392047 0 0 hm5C_site_56965 DeepMRMD:0;iRNA_m5C:0 56966 chr13 113826178 113826178 1 + T G UCEC 113826175 + 113826155 113826195 41 GCTGACCACGCGGCCTGTCACACTTGTGGAGGGGGAGGAGT GCTGACCACGCGGCCTGTCACACGTGTGGAGGGGGAGGAGT < 41bp 0.623767370560674 0.903601638326182 0.21877334 0.31340498 prediction 0.559668535531016 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113826175 chr13:113826178 nonsynonymous SNV 0.011 1 24 hm5C_associated_SNPs_103821 0 0 0 0 0 exosome 0.500231654489547 0.500232183982368 0 1.05898564339846e-06 hm5C_site_56966 DeepMRMD:0;iRNA_m5C:1.05898564339846e-06 56967 chr15 102515245 102515245 1 + C G rs548605852 102515244 + 102515224 102515264 41 GCTCCCAGGGAAGTGGTTGACCCCTCCGGTGGCCGGGCCAC GCTCCCAGGGAAGTGGTTGACGCCTCCGGTGGCCGGGCCAC < 41bp 0.503871377978211 0.783665016774619 0.15509889 0.32535926 prediction 0.559587277592815 Functional Gain - WASH3P ENSG00000185596 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102515244 chr15:102515245 . . 0 22 hm5C_associated_SNPs_103822 0 0 1 3 2 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_56967 DeepMRMD:0;iRNA_m5C:0 56968 chr16 72050945 72050945 1 + C A rs61741731 72050941 + 72050921 72050961 41 AGGTATGGATTTAACAGTCACGGGCTTTCAGTGGTGGAACA AGGTATGGATTTAACAGTCACGGGATTTCAGTGGTGGAACA < 41bp 0.627232196898895 0.90702399780566 0.35101926 0.86393166 prediction 0.559583601813529 Functional Gain - DHODH ENSG00000102967 CDS Human protein_coding chr16:72050941 chr16:72050945 nonsynonymous SNV 0.604 1 25 hm5C_associated_SNPs_103823 1 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.72786332 0 hm5C_site_56968 DeepMRMD:0.72786332;iRNA_m5C:0 Miller syndrome Miller syndrome 56969 chr7 22611804 22611804 1 + C G rs184755363 22611803 + 22611783 22611823 41 GGGAAGTGCCTGAGGAGACCCCCAAATGAGGCCTGTGTCAA GGGAAGTGCCTGAGGAGACCCGCAAATGAGGCCTGTGTCAA < 41bp 0.498271982999347 0.779771071760439 0.71138084 0.69419074 prediction 0.559542143520877 Functional Gain - LOC100506178 ENSG00000225541;ENSG00000232759 ncRNA_exonic Human other chr7:22611803 chr7:22611804 . . 0 22 hm5C_associated_SNPs_103824 0 0 0 0 0 unknown 0.500231643921099 0.50023164335716 0 0 hm5C_site_56969 DeepMRMD:0;iRNA_m5C:0 56970 chr11 5602527 5602527 1 + C G rs114791744 5602526 + 5602506 5602546 41 CTGCTGGCCATGGCCTTTGACCGCTATGTGGCCATCTGCTC CTGCTGGCCATGGCCTTTGACGGCTATGTGGCCATCTGCTC < 41bp 0.534683425833817 0.814446978446203 0.07730228 0.40329614 prediction 0.559527105224771 Functional Gain - OR52B6 ENSG00000187747 CDS Human protein_coding chr11:5602526 chr11:5602527 nonsynonymous SNV 0.821 3 22 hm5C_associated_SNPs_103825 0 0 0 0 0 unknown 0.500218355767725 0.500218754310577 0 7.97085703219125e-07 hm5C_site_56970 DeepMRMD:0;iRNA_m5C:7.97085703219125e-07 56971 chr12 53800463 53800463 1 + T A LUSC 53800459 + 53800439 53800479 41 AGAGGAAGGAGAAAACAGCCCAGATGCCCAACCCCAAGCCG AGAGGAAGGAGAAAACAGCCCAGAAGCCCAACCCCAAGCCG < 41bp 0.465238712976177 0.779758842319156 0.5940587 0.5350113 prediction 0.559517684638311 Functional Gain - SP1 ENSG00000185591 CDS Human protein_coding chr12:53800459 chr12:53800463 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_103826 0 0 1 0 2 Nucleus 0.500231643921036 0.500231643921165 0 2.57793786317961e-13 hm5C_site_56971 DeepMRMD:0;iRNA_m5C:2.57793786317961e-13 56972 chr1 41482901 41482901 1 + C G rs141445707 41482900 + 41482880 41482920 41 CCACCCACTGGCCTCAGCTTCCGTACCTGCCTGCACCACTC CCACCCACTGGCCTCAGCTTCGGTACCTGCCTGCACCACTC < 41bp 0.490813619893708 0.779753375415129 0.25643915 0.8288519 prediction 0.559506750830257 Functional Gain - SLFNL1-AS1 ENSG00000171790 intronic Human protein_coding chr1:41482900 chr1:41482901 . . 0 22 hm5C_associated_SNPs_103827 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0.6577038 0 hm5C_site_56972 DeepMRMD:0.6577038;iRNA_m5C:0 56973 chr17 73124974 73124974 1 + T G rs200128989 73124972 + 73124952 73124992 41 CGCCCGTGGTGCAGTGCATGCTTCGCTTCTCCCTCTCGGCC CGCCCGTGGTGCAGTGCATGCTGCGCTTCTCCCTCTCGGCC < 41bp 0.444221199134382 0.779742800440543 0.021485507 0.050127745 prediction 0.559485600881086 Functional Gain - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73124972 chr17:73124974 synonymous SNV . 0 23 hm5C_associated_SNPs_103828 0 0 0 0 0 Cytosol 0.500231643928043 0.500231643925452 0 0 hm5C_site_56973 DeepMRMD:0;iRNA_m5C:0 56974 chr9 90388107 90388107 1 + C G LUAD 90388106 + 90388086 90388126 41 GAACCTCTGCTTCATGACATCCGCAAATCTGTGGATTGGAG GAACCTCTGCTTCATGACATCGGCAAATCTGTGGATTGGAG < 41bp 0.525234610648603 0.804972946743639 0.055123508 0.24839911 prediction 0.559476672190073 Functional Gain - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90388106 chr9:90388107 . . 0 22 hm5C_associated_SNPs_103829 0 0 0 0 2 unknown 0.500231659507456 0.500233091179407 0 2.86334390309229e-06 hm5C_site_56974 DeepMRMD:0;iRNA_m5C:2.86334390309229e-06 56975 chr11 123900548 123900548 1 + T G LUAD 123900545 + 123900525 123900565 41 TTCATTGACATGTGGTTCTCCACTGTCACGGTGCCCAAATT TTCATTGACATGTGGTTCTCCACGGTCACGGTGCCCAAATT < 41bp 0.396859754938601 0.779726586421558 0.014174432 0.14652216 prediction 0.559453172843116 Functional Gain - OR10G8 ENSG00000234560 CDS Human protein_coding chr11:123900545 chr11:123900548 synonymous SNV . 0 24 hm5C_associated_SNPs_103830 0 0 0 0 0 unknown 0.500231643715127 0.500231644138531 0 8.46809511401148e-10 hm5C_site_56975 DeepMRMD:0;iRNA_m5C:8.46809511401148e-10 56976 chr17 41181174 41181174 1 + C G rs150946719 41181173 + 41181153 41181193 41 AGCAAGGAGAAGCCCTTGCCCCCCATCAGTCCACCAGCCCT AGCAAGGAGAAGCCCTTGCCCGCCATCAGTCCACCAGCCCT < 41bp 0.541476687299683 0.821193701418446 0.016306609 0.065659285 prediction 0.559434028237528 Functional Gain - RND2 ENSG00000108830 UTR3 Human protein_coding chr17:41181173 chr17:41181174 . . 0 22 hm5C_associated_SNPs_103831 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643916728 0 0 hm5C_site_56976 DeepMRMD:0;iRNA_m5C:0 56977 chr1 209848746 209848746 1 + C A rs370602402 209848742 + 209848722 209848762 41 GAAAAGATATAAGCGGCCCCCGGACGCTAAAGCGGTGCCAG GAAAAGATATAAGCGGCCCCCGGAAGCTAAAGCGGTGCCAG < 41bp 0.589368240116857 0.869082645668686 0.44320342 0.75099504 prediction 0.559428811103658 Functional Gain - LOC101930114 ENSG00000227591 ncRNA_intronic Human antisense chr1:209848742 chr1:209848746 . . 0 25 hm5C_associated_SNPs_103832 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.50199008 0 hm5C_site_56977 DeepMRMD:0.50199008;iRNA_m5C:0 56978 chr5 140564304 140564304 1 + C G rs148547040 140564303 + 140564283 140564323 41 AGCAGGGCGGCCTCGGTGGGCCGCTGCTCGATGCCTGAGGG AGCAGGGCGGCCTCGGTGGGCGGCTGCTCGATGCCTGAGGG < 41bp 0.521262364889935 0.800974605375818 0.68738157 0.9016776 prediction 0.559424480971766 Functional Gain - PCDHB16 ENSG00000196963 CDS Human other chr5:140564303 chr5:140564304 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_103833 0 0 0 0 0 Nucleus 0.500231643921104 0.500231643921088 0.42859206 0 hm5C_site_56978 DeepMRMD:0.42859206;iRNA_m5C:0 56979 chrX 153459033 153459033 1 + C A BLCA 153459029 + 153459009 153459049 41 CTTCTTCGCATGCTTTGCTGCTGCCAACCCTGGCTACCCCT CTTCTTCGCATGCTTTGCTGCTGCAAACCCTGGCTACCCCT < 41bp 0.365566816715469 0.779701546240806 0.13121673 0.21352467 prediction 0.559403092481612 Functional Gain - OPN1MW;OPN1MW2;OPN1MW3 ENSG00000147380 CDS Human other chrX:153459029 chrX:153459033 synonymous SNV . 0 25 hm5C_associated_SNPs_103834 0 0 0 0 0 unknown 0.500231643921092 0.50023164392118 0 1.74527059471075e-13 hm5C_site_56979 DeepMRMD:0;iRNA_m5C:1.74527059471075e-13 56980 chr14 24675883 24675883 1 + C A COAD 24675879 + 24675859 24675899 41 CTTGCTGGCAAGTGGTTCTCCCAGCTGACCCTGGGCATTGC CTTGCTGGCAAGTGGTTCTCCCAGATGACCCTGGGCATTGC < 41bp 0.596537672317876 0.87623892323114 0.45590457 0.5294384 prediction 0.559402501826527 Functional Gain - TSSK4 ENSG00000139908 CDS Human protein_coding chr14:24675879 chr14:24675883 nonsynonymous SNV 0.984 0 25 hm5C_associated_SNPs_103835 0 0 0 0 1 nucleus 0.500231644100489 0.500231663975209 0.0588768 3.97494392956332e-08 hm5C_site_56980 DeepMRMD:0.0588768;iRNA_m5C:3.97494392956332e-08 56981 chr17 7579315 7579315 1 + G T BRCA 7579319 - 7579299 7579339 41 TGGGACAGCCAAGTCTGTGACTTGCACGGTCAGTTGCCCTG TGGGACAGCCAAGTCTGTGACTTGAACGGTCAGTTGCCCTG < 41bp 0.404475682532742 0.779679922739631 0.1779784 0.24482447 prediction 0.559359845479262 Functional Gain - TP53 ENSG00000141510 CDS Human protein_coding chr17:7579319 chr17:7579315 stopgain 0.953 1 25 hm5C_associated_SNPs_103836 0 0 1 0 0 Ribosome 0.500231643921089 0.500231643921094 0 9.32587340685131e-15 hm5C_site_56981 DeepMRMD:0;iRNA_m5C:9.32587340685131e-15 56982 chr19 55107336 55107336 1 + C G rs34058364 55107335 + 55107315 55107355 41 CGGGGGCCAGTACAGATGCTCCGGTGCATACAACCTCTCCT CGGGGGCCAGTACAGATGCTCGGGTGCATACAACCTCTCCT < 41bp 0.471791972257204 0.779675974724296 0.8695682 0.9369277 prediction 0.559351949448592 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55107335 chr19:55107336 synonymous SNV . 0 22 hm5C_associated_SNPs_103837 0 0 0 0 1 exosome 0.500231643925992 0.500231643932297 0.134719 1.26088028906679e-11 hm5C_site_56982 DeepMRMD:0.134719;iRNA_m5C:1.26088028906679e-11 56983 chr16 14755821 14755821 1 + C A STAD 14755817 + 14755797 14755837 41 TCCCCCAGGCTGAGTCTGCTCTACCTGTACCTGTTTGACTA TCCCCCAGGCTGAGTCTGCTCTACATGTACCTGTTTGACTA < 41bp 0.642863320062536 0.922523056993654 0.05938545 0.61397475 prediction 0.559319473862237 Functional Gain - BFAR ENSG00000103429 CDS Human protein_coding chr16:14755817 chr16:14755821 nonsynonymous SNV 0.959 3 25 hm5C_associated_SNPs_103838 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921059 0.2279495 0 hm5C_site_56983 DeepMRMD:0.2279495;iRNA_m5C:0 56984 chr6 33380056 33380056 1 + C G rs572492088 33380055 + 33380035 33380075 41 GATGCAATGGCGCAGCCCCCCCGGCTGAGCCGCTCTGGTGC GATGCAATGGCGCAGCCCCCCGGGCTGAGCCGCTCTGGTGC < 41bp 0.532695610086517 0.812337948443728 0.67748356 0.94147766 prediction 0.559284676714422 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380055 chr6:33380056 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_103839 0 0 0 0 1 Cytosol 0.500231644021311 0.500231644056681 0.5279882 7.0740302504646e-11 hm5C_site_56984 DeepMRMD:0.5279882;iRNA_m5C:7.0740302504646e-11 56985 chr15 23811410 23811410 1 + C A LUAD 23811406 + 23811386 23811426 41 ACTCAGGAAGTGGCGGAAGCCCCCCCGGCTGCATCCTCCCT ACTCAGGAAGTGGCGGAAGCCCCCACGGCTGCATCCTCCCT < 41bp 0.375435464946369 0.779635445741429 0.120553106 0.3361464 prediction 0.559270891482858 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811406 chr15:23811410 nonsynonymous SNV 0.509 1 25 hm5C_associated_SNPs_103840 0 0 0 0 0 chromatin 0.500231643548027 0.500231643801557 0 5.07059949583777e-10 hm5C_site_56985 DeepMRMD:0;iRNA_m5C:5.07059949583777e-10 56986 chr1 233802464 233802464 1 + T A UCEC 233802460 + 233802440 233802480 41 TGGTCCAGCGCATCACCGTGCACGTCACCCGCAGGCCGGTC TGGTCCAGCGCATCACCGTGCACGACACCCGCAGGCCGGTC < 41bp 0.557036077178068 0.836657935192765 0.13843107 0.120521456 prediction 0.559243716029394 Functional Gain - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233802460 chr1:233802464 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_103841 0 0 1 0 0 Endoplasmic reticulum 0.501238078952253 0.500251120810987 0 0 hm5C_site_56986 DeepMRMD:0;iRNA_m5C:0 56987 chr19 58578877 58578877 1 + C A ESCA 58578873 + 58578853 58578893 41 CCTTCCGGCAAAGCATCCACCTCACCCAGCATCTGCGAATC CCTTCCGGCAAAGCATCCACCTCAACCAGCATCTGCGAATC < 41bp 0.35136768098756 0.779617061478488 0.040213525 0.13013351 prediction 0.559234122956976 Functional Gain - ZNF135 ENSG00000176293 CDS Human protein_coding chr19:58578873 chr19:58578877 nonsynonymous SNV 0.979 0 25 hm5C_associated_SNPs_103842 0 0 0 0 0 exosome 0.50023164482489 0.500231643921158 0 0 hm5C_site_56987 DeepMRMD:0;iRNA_m5C:0 56988 chr16 28903656 28903656 1 + C A rs6565261 28903652 + 28903632 28903672 41 GCAGGGTCTTCCACTGACCTCAGGCCAAGAACCCCTGCCCT GCAGGGTCTTCCACTGACCTCAGGACAAGAACCCCTGCCCT < 41bp 0.412427337295274 0.779578274378237 0.91407347 0.9206593 prediction 0.559156548756473 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28903652 chr16:28903656 synonymous SNV . 0 25 hm5C_associated_SNPs_103843 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921093 0.0131716599999998 1.11022302462516e-15 hm5C_site_56988 DeepMRMD:0.0131716599999998;iRNA_m5C:1.11022302462516e-15 56989 chr1 18434635 18434635 1 + C A rs540719862 18434631 + 18434611 18434651 41 CTCCCGGGCACCATGCGAACCGCCCCGAGCCTCCGCCGCTG CTCCCGGGCACCATGCGAACCGCCACGAGCCTCCGCCGCTG < 41bp 0.615817064290786 0.895377988888633 0.13719815 0.1990233 prediction 0.559121849195695 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18434631 chr1:18434635 nonsynonymous SNV 0.300 1 25 hm5C_associated_SNPs_103844 0 0 0 0 1 Nucleus 0.500231643774766 0.500231600426837 0 0 hm5C_site_56989 DeepMRMD:0;iRNA_m5C:0 56990 chr11 75277757 75277757 1 + C G rs650241 75277756 + 75277736 75277776 41 GCTGCGCTCACTCAGCAACTCCACGGCGCGCAACGTGACCT GCTGCGCTCACTCAGCAACTCGACGGCGCGCAACGTGACCT < 41bp 0.470539500909466 0.779556356381093 0.18663886 0.32287169 prediction 0.559112712762186 Functional Gain - SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75277756 chr11:75277757 synonymous SNV . 0 22 hm5C_associated_SNPs_103845 2 0 1 0 0 Ribosome 0.500233479896374 0.500230987242829 0 0 hm5C_site_56990 DeepMRMD:0;iRNA_m5C:0 not specified not specified 56991 chr10 76970648 76970648 1 + T G rs556059717 76970646 + 76970626 76970666 41 ACCGCGAGCGTGCCAAGCGGCTTCAGCAGCTAGCGGAGCGG ACCGCGAGCGTGCCAAGCGGCTGCAGCAGCTAGCGGAGCGG < 41bp 0.503466156564341 0.783015004083105 0.16894391 0.494745 prediction 0.559097695037528 Functional Gain - VDAC2 ENSG00000165637 UTR5 Human protein_coding chr10:76970646 chr10:76970648 . . 0 23 hm5C_associated_SNPs_103846 0 0 1 0 1 Ribosome 0.500231643921154 0.500231644649932 0 1.45755696401295e-09 hm5C_site_56991 DeepMRMD:0;iRNA_m5C:1.45755696401295e-09 56992 chr1 248525461 248525461 1 + C A LUSC 248525457 + 248525437 248525477 41 AGTGGATGGCTTCACATTCACTCCCATCACCATGACCTTCC AGTGGATGGCTTCACATTCACTCCAATCACCATGACCTTCC < 41bp 0.632204520781908 0.911736762556737 0.07924974 0.9399365 prediction 0.559064483549657 Functional Gain - OR2T4 ENSG00000196944 CDS Human protein_coding chr1:248525457 chr1:248525461 synonymous SNV . 0 25 hm5C_associated_SNPs_103847 0 0 0 0 0 unknown 0.500231643923394 0.500231643921094 0.879873 0 hm5C_site_56992 DeepMRMD:0.879873;iRNA_m5C:0 56993 chr19 34263336 34263336 1 + C G LUSC 34263332 + 34263312 34263352 41 CGGGTGCTCATGGTGCTGGCCGGCCTGGCCTCGTCCACTGC CGGGTGCTCATGGTGCTGGCCGGCGTGGCCTCGTCCACTGC < 41bp 0.497702608956622 0.77952655019095 0.10375792 0.368691 prediction 0.559053100381899 Functional Gain - CHST8 ENSG00000124302 CDS Human protein_coding chr19:34263332 chr19:34263336 nonsynonymous SNV 0.131 0 25 hm5C_associated_SNPs_103848 0 0 0 0 0 exosome 0.500231643921107 0.500231643921078 0 0 hm5C_site_56993 DeepMRMD:0;iRNA_m5C:0 56994 chr5 140558825 140558825 1 + C A UCEC 140558821 + 140558801 140558841 41 TCTTCTGTGGGGAACTTTTACACCCTACTAACAGAGACACC TCTTCTGTGGGGAACTTTTACACCATACTAACAGAGACACC < 41bp 0.375440896110041 0.779525965074263 0.17305177 0.31704152 prediction 0.559051930148525 Functional Gain - PCDHB8 ENSG00000120322 CDS Human protein_coding chr5:140558821 chr5:140558825 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_103849 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_56994 DeepMRMD:0;iRNA_m5C:0 56995 chr2 113404469 113404469 1 + C A UCEC 113404465 + 113404445 113404485 41 GCTTCTGGTCCTTTGGTGGACTACCTATGGATGCTCATCCT GCTTCTGGTCCTTTGGTGGACTACATATGGATGCTCATCCT < 41bp 0.362988181464552 0.779500230176879 0.121067375 0.7293565 prediction 0.559000460353757 Functional Gain - SLC20A1 ENSG00000144136 CDS Human protein_coding chr2:113404465 chr2:113404469 nonsynonymous SNV 0.223 2 25 hm5C_associated_SNPs_103850 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921098 0.458713 1.06581410364015e-14 hm5C_site_56995 DeepMRMD:0.458713;iRNA_m5C:1.06581410364015e-14 56996 chr4 17600138 17600138 1 + C A OV 17600134 + 17600114 17600154 41 GGCTGATGCGCTCTGTTACGCACACACGTTTAACCCGAAGG GGCTGATGCGCTCTGTTACGCACAAACGTTTAACCCGAAGG < 41bp 0.368018928152792 0.779473357434069 0.09679735 0.11753321 prediction 0.558946714868137 Functional Gain - LAP3 ENSG00000002549 CDS Human protein_coding chr4:17600134 chr4:17600138 nonsynonymous SNV 0.880 1 25 hm5C_associated_SNPs_103851 0 0 1 0 2 Ribosome 0.500231643913312 0.500231643921093 0 1.55617740915659e-11 hm5C_site_56996 DeepMRMD:0;iRNA_m5C:1.55617740915659e-11 56997 chr19 30054857 30054857 1 + C G rs185075864 30054856 + 30054836 30054876 41 CATTGACAGACAAGACCAACCCGAGCATCTCAGAGGCCGCA CATTGACAGACAAGACCAACCGGAGCATCTCAGAGGCCGCA < 41bp 0.511102686229795 0.790566039284015 0.33645272 0.84946334 prediction 0.55892670610844 Functional Gain - VSTM2B ENSG00000187135 UTR3 Human protein_coding chr19:30054856 chr19:30054857 . . 0 22 hm5C_associated_SNPs_103852 0 0 0 0 0 exosome 0.499997069650276 0.500186212818441 0.69892668 0.000372425636881335 hm5C_site_56997 DeepMRMD:0.69892668;iRNA_m5C:0.000372425636881335 56998 chr12 13066220 13066220 1 + T A rs1061047 13066216 + 13066196 13066236 41 TCATCTCTCTAGTGCTGCCTCACATTGGGCCTCAGCAGCTC TCATCTCTCTAGTGCTGCCTCACAATGGGCCTCAGCAGCTC < 41bp 0.509380537812539 0.788834397176501 0.010307014 0.023791283 prediction 0.558907718727924 Functional Gain - GPRC5A ENSG00000013588 UTR3 Human protein_coding chr12:13066216 chr12:13066220 . . 0 25 hm5C_associated_SNPs_103853 0 0 1 0 0 Nucleus 0.500272318884645 0.500233947331808 0 0 hm5C_site_56998 DeepMRMD:0;iRNA_m5C:0 56999 chr19 47422158 47422158 1 + T A UCEC 47422154 + 47422134 47422174 41 GTCAATAATGACCACTTTCTCTACTGGGGAGAAGTTAGCCG GTCAATAATGACCACTTTCTCTACAGGGGAGAAGTTAGCCG < 41bp 0.466695240865282 0.779452583915967 0.29161185 0.876775 prediction 0.558905167831934 Functional Gain - ARHGAP35 ENSG00000160007 CDS Human protein_coding chr19:47422154 chr19:47422158 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_103854 0 0 1 0 0 Ribosome 0.500231643920836 0.500231643916047 0.75355 0 hm5C_site_56999 DeepMRMD:0.75355;iRNA_m5C:0 57000 chr7 150020625 150020625 1 + G T rs534922901 150020629 - 150020609 150020649 41 CTGAGGGGTGGAGCCGGCAGCCTGCGGAGCCACTGGCCAAG CTGAGGGGTGGAGCCGGCAGCCTGAGGAGCCACTGGCCAAG < 41bp 0.464450804276702 0.779445001121449 0.8791398 0.89033467 prediction 0.558890002242897 Functional Gain - ACTR3C;LRRC61 ENSG00000106526 CDS Human protein_coding chr7:150020629 chr7:150020625 nonsynonymous SNV 0.073 2 25 hm5C_associated_SNPs_103855 0 0 1 0 1 unknown 0.500231754768183 0.500231643923457 0.0223897399999999 0 hm5C_site_57000 DeepMRMD:0.0223897399999999;iRNA_m5C:0 57001 chr1 111441894 111441894 1 + T G rs151105416 111441892 + 111441872 111441912 41 ATTTATAGCATGAAGCCCTACATGATCACTGCAGGATGATC ATTTATAGCATGAAGCCCTACAGGATCACTGCAGGATGATC < 41bp 0.464451788932714 0.779442834008897 0.039186805 0.14950088 prediction 0.558885668017794 Functional Gain - CD53 ENSG00000143119 UTR3 Human protein_coding chr1:111441892 chr1:111441894 . . 0 23 hm5C_associated_SNPs_103856 0 0 1 0 0 Endoplasmic reticulum 0.500231643921098 0.500231643921095 0 0 hm5C_site_57001 DeepMRMD:0;iRNA_m5C:0 57002 chr4 165818089 165818089 1 + C A rs77925215 165818085 + 165818065 165818105 41 ACAGGCACTCACGGCCACACCTGACTAATTTTTGTATTTTT ACAGGCACTCACGGCCACACCTGAATAATTTTTGTATTTTT < 41bp 0.40594134833231 0.779429168386746 0.1661922 0.25575903 prediction 0.558858336773492 Functional Gain - APELA ENSG00000248329 ncRNA_exonic Human protein_coding chr4:165818085 chr4:165818089 . . 0 25 hm5C_associated_SNPs_103857 0 0 0 0 0 unknown 0.500231644259938 0.500231643921092 0 0 hm5C_site_57002 DeepMRMD:0;iRNA_m5C:0 57003 chr20 61959724 61959724 1 + C A LUAD 61959720 + 61959700 61959740 41 GACTCCTTCCACGAGAACACCAGGCCCCCCATGCCCATCTT GACTCCTTCCACGAGAACACCAGGACCCCCATGCCCATCTT < 41bp 0.386424837854346 0.779403855248466 0.6542045 0.85311836 prediction 0.558807710496932 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61959720 chr20:61959724 nonsynonymous SNV 0.074 4 25 hm5C_associated_SNPs_103858 0 0 0 0 1 exosome 0.500231643338788 0.500231641914588 0.39782772 0 hm5C_site_57003 DeepMRMD:0.39782772;iRNA_m5C:0 57004 chr19 1106615 1106615 1 + T A rs713041 1106611 + 1106591 1106631 41 CGCCCGAGCCCCTGCCCACGCCCTTGGAGCCTTCCACCGGC CGCCCGAGCCCCTGCCCACGCCCTAGGAGCCTTCCACCGGC < 41bp 0.476321083568727 0.77937685629884 0.1228064 0.12528896 prediction 0.558753712597681 Functional Gain - GPX4 ENSG00000167468 CDS Human protein_coding chr19:1106611 chr19:1106615 stopgain . 0 25 hm5C_associated_SNPs_103859 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_57004 DeepMRMD:0;iRNA_m5C:0 57005 chr1 1269661 1269661 1 + C A LUSC 1269657 + 1269637 1269677 41 TGTGCAGGTGGTCCTCAGGCCCGCCGTGCAGATGGGCGCCC TGTGCAGGTGGTCCTCAGGCCCGCAGTGCAGATGGGCGCCC < 41bp 0.403758017994684 0.77936057185812 0.13978997 0.25683105 prediction 0.55872114371624 Functional Gain - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1269657 chr1:1269661 synonymous SNV . 0 25 hm5C_associated_SNPs_103860 0 0 0 0 0 chromatin 0.50023164392195 0.500231643904554 0 0 hm5C_site_57005 DeepMRMD:0;iRNA_m5C:0 57006 chr9 21440600 21440600 1 + C A LUAD 21440596 + 21440576 21440616 41 TGTGATCTCCCTGAGACCCACAGCCTGGATAACAGGAGGAC TGTGATCTCCCTGAGACCCACAGCATGGATAACAGGAGGAC < 41bp 0.616024004826502 0.895377107991266 0.18379402 0.17565185 prediction 0.558706206329528 Functional Gain - IFNA1 ENSG00000197919 CDS Human protein_coding chr9:21440596 chr9:21440600 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_103861 0 0 0 0 0 unknown 0.500231643921133 0.500231634921428 0 0 hm5C_site_57006 DeepMRMD:0;iRNA_m5C:0 57007 chr14 42077369 42077369 1 + C G rs141251236 42077368 + 42077348 42077388 41 GTGAGAAGGACCGGTTCCCTCCGTGCTGCTTCCTCCCCGTG GTGAGAAGGACCGGTTCCCTCGGTGCTGCTTCCTCCCCGTG < 41bp 0.514780161501432 0.794123675005745 0.3911932 0.8171185 prediction 0.558687027008626 Functional Gain - LRFN5 ENSG00000165379 UTR5 Human protein_coding chr14:42077368 chr14:42077369 . . 0 22 hm5C_associated_SNPs_103862 0 0 0 0 0 Nucleus 0.500231643894214 0.500231643551505 0.634237 0 hm5C_site_57007 DeepMRMD:0.634237;iRNA_m5C:0 57008 chr12 96883406 96883406 1 + C A SARC 96883402 + 96883382 96883422 41 GTCAATATGGCGGCGCAGGGCTCCCCCTCGAGCTCTCCGTC GTCAATATGGCGGCGCAGGGCTCCACCTCGAGCTCTCCGTC < 41bp 0.391753085145721 0.779341553237601 0.12803328 0.24499074 prediction 0.558683106475202 Functional Gain - CFAP54 ENSG00000188596 CDS Human protein_coding chr12:96883402 chr12:96883406 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103863 0 0 0 0 0 exosome 0.500231643916493 0.500232581512377 0 1.8751917669757e-06 hm5C_site_57008 DeepMRMD:0;iRNA_m5C:1.8751917669757e-06 57009 chr15 78833166 78833166 1 + C A rs561451459 78833162 + 78833142 78833182 41 CCGAGAGTTGGGGTGGCTTCCGTCCTCAGGAGTTCGGTACG CCGAGAGTTGGGGTGGCTTCCGTCATCAGGAGTTCGGTACG < 41bp 0.439098193161024 0.779336113245034 0.33251143 0.21198031 prediction 0.558672226490069 Functional Gain - PSMA4 ENSG00000041357 UTR5 Human protein_coding chr15:78833162 chr15:78833166 . . 0 25 hm5C_associated_SNPs_103864 0 0 1 0 0 Ribosome 0.500231643921082 0.500231645382342 0 2.92252044786778e-09 hm5C_site_57009 DeepMRMD:0;iRNA_m5C:2.92252044786778e-09 57010 chr12 108910809 108910809 1 + C A LUAD 108910805 + 108910785 108910825 41 GACTGAACCGAAATGGGTCTCGGTCTGGAGCCGCTTCCTCT GACTGAACCGAAATGGGTCTCGGTATGGAGCCGCTTCCTCT < 41bp 0.38202969238238 0.77933491879831 0.32727987 0.5865722 prediction 0.558669837596621 Functional Gain - FICD ENSG00000198855 CDS Human protein_coding chr12:108910805 chr12:108910809 synonymous SNV . 0 25 hm5C_associated_SNPs_103865 0 0 0 0 0 chromatin 0.500231643683905 0.50023164397585 0.1731444 5.83890047423097e-10 hm5C_site_57010 DeepMRMD:0.1731444;iRNA_m5C:5.83890047423097e-10 57011 chr1 65830417 65830417 1 + T C UCEC 65830415 + 65830395 65830435 41 TTTAGTAACCTAAAGGACAACTTGAAAGACACCCTCAAAGA TTTAGTAACCTAAAGGACAACTCGAAAGACACCCTCAAAGA < 41bp 0.514918868255418 0.794241268318801 0.007892489 0.19878447 prediction 0.558644800126765 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65830415 chr1:65830417 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_103866 0 0 0 0 2 Cytosol 0.500231643921058 0.500231643921092 0 6.88338275267597e-14 hm5C_site_57011 DeepMRMD:0;iRNA_m5C:6.88338275267597e-14 57012 chr19 17000065 17000065 1 + C A rs575614575 17000061 + 17000041 17000081 41 TCAGCCTGTCTGGCGGCACCCAGACCCCCAGCGTCTACGAC TCAGCCTGTCTGGCGGCACCCAGAACCCCAGCGTCTACGAC < 41bp 0.417297656961114 0.77929387115567 0.75607586 0.87340415 prediction 0.558587742311341 Functional Gain - F2RL3 ENSG00000127533 CDS Human protein_coding chr19:17000061 chr19:17000065 nonsynonymous SNV 0.130 0 25 hm5C_associated_SNPs_103867 0 0 0 0 1 chromatin 0.500231643921047 0.50023164392105 0.23465658 5.77315972805081e-15 hm5C_site_57012 DeepMRMD:0.23465658;iRNA_m5C:5.77315972805081e-15 57013 chr10 92663014 92663014 1 + C A PAAD 92663010 + 92662990 92663030 41 AGAGATCATACTCCCAAGAACAGGCTTTGACCCTTCTTTAA AGAGATCATACTCCCAAGAACAGGATTTGACCCTTCTTTAA < 41bp 0.396481094387788 0.779286640761411 0.21069604 0.30003482 prediction 0.558573281522821 Functional Gain - RPP30 ENSG00000148688 CDS Human protein_coding chr10:92663010 chr10:92663014 nonsynonymous SNV 0.025 1 25 hm5C_associated_SNPs_103868 0 0 0 0 2 Cytosol 0.500231643921104 0.50023164392056 0 0 hm5C_site_57013 DeepMRMD:0;iRNA_m5C:0 57014 chr15 28901009 28901009 1 + C G LUSC 28901005 + 28900985 28901025 41 TGGGGGGCCTCATGGCGGTCCTGGCTGTGGTTGGAGGCATC TGGGGGGCCTCATGGCGGTCCTGGGTGTGGTTGGAGGCATC < 41bp 0.512920096814124 0.792200759940561 0.52629757 0.6934201 prediction 0.558561326252873 Functional Gain - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28901005 chr15:28901009 . . 0 25 hm5C_associated_SNPs_103869 0 0 0 0 1 unknown 0.5002315346058 0.500231643921093 0.33424506 2.1863058430327e-07 hm5C_site_57014 DeepMRMD:0.33424506;iRNA_m5C:2.1863058430327e-07 57015 chr12 9083485 9083485 1 + C A LIHC 9083481 + 9083461 9083501 41 ATGTGGGCATGAACCTGACACGGACAGCCACACCTGCGCCC ATGTGGGCATGAACCTGACACGGAAAGCCACACCTGCGCCC < 41bp 0.366035008691736 0.779279050883247 0.15396541 0.28883725 prediction 0.558558101766495 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9083481 chr12:9083485 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_103870 0 0 0 0 1 Endoplasmic reticulum 0.500231656695586 0.500231657965648 0 2.54012233469325e-09 hm5C_site_57015 DeepMRMD:0;iRNA_m5C:2.54012233469325e-09 57016 chr9 136305517 136305517 1 + T G CHOL 136305514 + 136305494 136305534 41 GCTGGGAAGATGAGCATCTCCCCTAACACCACCTACCCCTC GCTGGGAAGATGAGCATCTCCCCGAACACCACCTACCCCTC < 41bp 0.41141234809008 0.779261119002414 0.10590166 0.3038178 prediction 0.558522238004827 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136305514 chr9:136305517 synonymous SNV . 0 24 hm5C_associated_SNPs_103871 0 0 1 0 1 nucleus 0.500231643922575 0.500231595804925 0 0 hm5C_site_57016 DeepMRMD:0;iRNA_m5C:0 57017 chr22 21989038 21989038 1 + C A SARC 21989034 + 21989014 21989054 41 TGTGGGATTCGCTGGGTAGCCAGACCAGCTTTCAGTGGACA TGTGGGATTCGCTGGGTAGCCAGAACAGCTTTCAGTGGACA < 41bp 0.375270855420839 0.779254329359779 0.8410696 0.8018768 prediction 0.558508658719557 Functional Gain - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21989034 chr22:21989038 nonsynonymous SNV 0.880 2 25 hm5C_associated_SNPs_103872 0 0 0 0 1 nucleolus 0.500231253829994 0.500231643921145 0 7.80182302539956e-07 hm5C_site_57017 DeepMRMD:0;iRNA_m5C:7.80182302539956e-07 57018 chr19 54401870 54401870 1 + C A UCEC 54401866 + 54401846 54401886 41 CTTCCTCACCCAGCTCCACTCCACCTTCCAGACCCCGGTAA CTTCCTCACCCAGCTCCACTCCACATTCCAGACCCCGGTAA < 41bp 0.372717435553472 0.779210672503128 0.114629865 0.20517975 prediction 0.558421345006257 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54401866 chr19:54401870 synonymous SNV . 0 25 hm5C_associated_SNPs_103873 0 0 0 0 0 Cytosol 0.500231643921016 0.500231644085736 0 3.29439364676887e-10 hm5C_site_57018 DeepMRMD:0;iRNA_m5C:3.29439364676887e-10 57019 chr19 34263786 34263786 1 + C A LUAD 34263782 + 34263762 34263802 41 TTCTTCCTGAGCCTCATCCGCGCGCCGCGGAACCTGACCTT TTCTTCCTGAGCCTCATCCGCGCGACGCGGAACCTGACCTT < 41bp 0.629714799630657 0.908923354181308 0.12268406 0.23567659 prediction 0.558417109101303 Functional Gain - CHST8 ENSG00000124302 CDS Human protein_coding chr19:34263782 chr19:34263786 nonsynonymous SNV 0.406 4 25 hm5C_associated_SNPs_103874 0 0 0 0 0 exosome 0.500231642766392 0.500231643954264 0 2.37574471206869e-09 hm5C_site_57019 DeepMRMD:0;iRNA_m5C:2.37574471206869e-09 57020 chr19 17452053 17452053 1 + C G rs149578279 17452052 + 17452032 17452072 41 GTCCCGGTCCTGACCTGCCCCCGCACCTGCTGCTGTCCTGT GTCCCGGTCCTGACCTGCCCCGGCACCTGCTGCTGTCCTGT < 41bp 0.481852537027981 0.779170658747326 0.27309453 0.7205581 prediction 0.558341317494653 Functional Gain - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17452052 chr19:17452053 nonsynonymous SNV 0.020 0 22 hm5C_associated_SNPs_103875 0 0 1 0 0 Ribosome 0.50023164392269 0.50023171462185 0.4411162 1.41398318831421e-07 hm5C_site_57020 DeepMRMD:0.4411162;iRNA_m5C:1.41398318831421e-07 57021 chr1 203274801 203274801 1 + C A PAAD 203274797 + 203274777 203274817 41 GCCGCCGTGGGCTTCCTCTCCAGCCTCCTGAGGACCCGGGG GCCGCCGTGGGCTTCCTCTCCAGCATCCTGAGGACCCGGGG < 41bp 0.625833849821886 0.905003588756997 0.53911585 0.1756489 prediction 0.558339477870222 Functional Gain - BTG2 ENSG00000159388 CDS Human protein_coding chr1:203274797 chr1:203274801 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_103876 0 0 1 1 1 exosome 0.500231683572559 0.500231643921092 0 0 hm5C_site_57021 DeepMRMD:0;iRNA_m5C:0 57022 chr17 39411673 39411673 1 + C A COAD 39411669 + 39411649 39411689 41 TTGCTCCCCTTGCTGTCAGCCTACCTGCTGCAGGACCACCT TTGCTCCCCTTGCTGTCAGCCTACATGCTGCAGGACCACCT < 41bp 0.390821065591268 0.779168919790799 0.14561412 0.54424524 prediction 0.558337839581598 Functional Gain - KRTAP9-9 ENSG00000198083 CDS Human protein_coding chr17:39411669 chr17:39411673 synonymous SNV . 0 25 hm5C_associated_SNPs_103877 0 0 0 0 0 unknown 0.500231643920519 0.500231643313003 0.0884904799999999 0 hm5C_site_57022 DeepMRMD:0.0884904799999999;iRNA_m5C:0 57023 chr7 5633278 5633278 1 + C A PRAD 5633274 + 5633254 5633294 41 TTACCTGGCGCCGTCGGGGCCCAGCGGCACGCTCAAGGCGG TTACCTGGCGCCGTCGGGGCCCAGAGGCACGCTCAAGGCGG < 41bp 0.417578775899318 0.779168551443496 0.65821016 0.8179567 prediction 0.558337102886992 Functional Gain - FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5633274 chr7:5633278 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_103878 0 0 0 0 0 Ribosome 0.500231643921094 0.500231644163955 0.31949308 4.85723461451926e-10 hm5C_site_57023 DeepMRMD:0.31949308;iRNA_m5C:4.85723461451926e-10 57024 chr17 38249328 38249328 1 + C A HNSC 38249324 + 38249304 38249344 41 AGGGGGCAGCGGCAGAAGGCCGGCCGGGCGGGTCACTGGGC AGGGGGCAGCGGCAGAAGGCCGGCAGGGCGGGTCACTGGGC < 41bp 0.62829409384222 0.90745983382404 0.84754324 0.7601396 prediction 0.558331479963641 Functional Gain - THRA ENSG00000126351 CDS Human protein_coding chr17:38249324 chr17:38249328 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_103879 0 0 1 0 1 Ribosome 0.500231643921162 0.500231643916007 0 0 hm5C_site_57024 DeepMRMD:0;iRNA_m5C:0 White blood cell count 57025 chr11 55944827 55944827 1 + T G UCEC 55944825 + 55944805 55944845 41 TTCTCCACCTGTGCCTCTCACCTGACTGCTGTGACCATATT TTCTCCACCTGTGCCTCTCACCGGACTGCTGTGACCATATT < 41bp 0.453713455701182 0.779157479611522 0.059743047 0.30432135 prediction 0.558314959223044 Functional Gain - OR5J2 ENSG00000174957 CDS Human protein_coding chr11:55944825 chr11:55944827 nonsynonymous SNV 0.276 4 23 hm5C_associated_SNPs_103880 0 0 0 0 0 unknown 0.500273900214966 0.500231680260161 0 0 hm5C_site_57025 DeepMRMD:0;iRNA_m5C:0 57026 chr2 26676349 26676349 1 + C G rs200824609 26676348 + 26676328 26676368 41 GGAGGAGACCCCACCCTCCCCCTGGGTCATCCACCCCAATG GGAGGAGACCCCACCCTCCCCGTGGGTCATCCACCCCAATG < 41bp 0.467030406971788 0.779154810533137 0.19633958 0.8319285 prediction 0.558309621066274 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26676348 chr2:26676349 synonymous SNV . 0 22 hm5C_associated_SNPs_103881 0 0 0 0 1 exosome 0.500231643913565 0.500231643921805 0.663857 1.6479706488326e-11 hm5C_site_57026 DeepMRMD:0.663857;iRNA_m5C:1.6479706488326e-11 57027 chr12 55725700 55725700 1 + C A rs115313932 55725696 + 55725676 55725716 41 TTTCTTAGAAATCTCATTTACAACCGTATGCATCCCCAGAT TTTCTTAGAAATCTCATTTACAACAGTATGCATCCCCAGAT < 41bp 0.609001319974418 0.888151927295919 0.1585947 0.26644355 prediction 0.558301214643002 Functional Gain - OR6C3 ENSG00000205329 CDS Human protein_coding chr12:55725696 chr12:55725700 synonymous SNV . 0 25 hm5C_associated_SNPs_103882 0 0 0 0 0 unknown 0.500231643921092 0.500231661243387 0 3.46445885313074e-08 hm5C_site_57027 DeepMRMD:0;iRNA_m5C:3.46445885313074e-08 57028 chr16 20482481 20482481 1 + C G KIRP 20482480 + 20482460 20482500 41 CTAGTGGGACCAGTGGTCTTCCCAAGATGGCAGAACATTCC CTAGTGGGACCAGTGGTCTTCGCAAGATGGCAGAACATTCC < 41bp 0.467850096119855 0.779142703594551 0.21782395 0.29144847 prediction 0.558285407189101 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20482480 chr16:20482481 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_103883 0 0 0 0 2 exosome 0.500231643922298 0.500231643924482 0 4.36761737887537e-12 hm5C_site_57028 DeepMRMD:0;iRNA_m5C:4.36761737887537e-12 57029 chr6 167708143 167708143 1 + T A LUSC 167708139 + 167708119 167708159 41 AAGGGGACCATCATCCTCTCCATGTGTGGCTACGTGGCCTT AAGGGGACCATCATCCTCTCCATGAGTGGCTACGTGGCCTT < 41bp 0.556237373257375 0.835379427340239 0.26225966 0.21829206 prediction 0.558284108165729 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708139 chr6:167708143 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_103884 0 0 1 0 1 cytosol 0.500231643372127 0.500231642810768 0 0 hm5C_site_57029 DeepMRMD:0;iRNA_m5C:0 57030 chr10 25464639 25464639 1 + C A COAD 25464635 + 25464615 25464655 41 GGGACTCCCACCAGCTGAAGCGAGCCAACTGCTCCGGCCGC GGGACTCCCACCAGCTGAAGCGAGACAACTGCTCCGGCCGC < 41bp 0.421985858646221 0.779141293246597 0.9058814 0.92297846 prediction 0.558282586493194 Functional Gain - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25464635 chr10:25464639 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103885 0 0 0 0 0 Endoplasmic reticulum 0.500231643921123 0.500231643924546 0.03419412 6.84674539286334e-12 hm5C_site_57030 DeepMRMD:0.03419412;iRNA_m5C:6.84674539286334e-12 57031 chr16 90162233 90162233 1 + T G rs561075303 90162231 + 90162211 90162251 41 ATTTTCAGGGGTCGCATGCCCATGAGGGAGGTGGATGAACA ATTTTCAGGGGTCGCATGCCCAGGAGGGAGGTGGATGAACA < 41bp 0.553214940520369 0.832345123135173 0.50619876 0.8897518 prediction 0.558260365229609 Functional Gain - PRDM7;FAM157B ENSG00000261812 CDS Human transcribed_unprocessed_pseudogene chr16:90162231 chr16:90162233 unknown . 0 23 hm5C_associated_SNPs_103886 0 0 0 0 0 unknown 0.500231643920896 0.500231643984858 0.76710608 1.27923449610989e-10 hm5C_site_57031 DeepMRMD:0.76710608;iRNA_m5C:1.27923449610989e-10 57032 chr22 20196046 20196046 1 + C A rs17746115 20196042 + 20196022 20196062 41 CTGATGGATTAAAGTGGAACCAAGCGAATTGATTTTTCTCC CTGATGGATTAAAGTGGAACCAAGAGAATTGATTTTTCTCC < 41bp 0.505758966656857 0.784864844396043 0.46997237 0.5490948 prediction 0.558211755478372 Functional Gain - LINC00896 ENSG00000236499 ncRNA_exonic Human lincRNA chr22:20196042 chr22:20196046 . . 0 25 hm5C_associated_SNPs_103887 0 0 1 0 0 unknown 0.50023164392148 0.500231643920559 0.0981896 0 hm5C_site_57032 DeepMRMD:0.0981896;iRNA_m5C:0 57033 chr16 55361260 55361260 1 + C A LUAD 55361256 + 55361236 55361276 41 CAGGGAGTTTTACATCCAGCCTGGCACAACCAGGAGCCTAT CAGGGAGTTTTACATCCAGCCTGGAACAACCAGGAGCCTAT < 41bp 0.36319768378654 0.779091472124875 0.091115385 0.1700924 prediction 0.55818294424975 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361256 chr16:55361260 nonsynonymous SNV 0.937 3 25 hm5C_associated_SNPs_103888 0 0 0 0 2 exosome 0.500231643514884 0.500231569022231 0 0 hm5C_site_57033 DeepMRMD:0;iRNA_m5C:0 57034 chr1 41223953 41223953 1 + C A COAD 41223949 + 41223929 41223969 41 CTGGGCAGATCATCATCGCACAGCCTCAGCAGGGCCAGGTC CTGGGCAGATCATCATCGCACAGCATCAGCAGGGCCAGGTC < 41bp 0.629941474981979 0.909027232311875 0.08751887 0.114628226 prediction 0.558171514659792 Functional Gain - NFYC ENSG00000066136 CDS Human protein_coding chr1:41223949 chr1:41223953 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_103889 0 0 0 0 1 Ribosome 0.50023164392109 0.500231642549658 0 0 hm5C_site_57034 DeepMRMD:0;iRNA_m5C:0 57035 chr6 161134100 161134100 1 + T A LUAD 161134096 + 161134076 161134116 41 GACAACGATCCGCAGGGGCCCTGGTGCTATACTACTGATCC GACAACGATCCGCAGGGGCCCTGGAGCTATACTACTGATCC < 41bp 0.563178210735578 0.84225790379641 0.43024662 0.54133135 prediction 0.558159386121664 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161134096 chr6:161134100 nonsynonymous SNV 0.934 4 25 hm5C_associated_SNPs_103890 0 0 0 0 2 exosome 0.50023164392109 0.500231643921092 0.0826627 2.66453525910038e-15 hm5C_site_57035 DeepMRMD:0.0826627;iRNA_m5C:2.66453525910038e-15 57036 chr1 27189997 27189997 1 + C G UCEC 27189996 + 27189976 27190016 41 GCTCCAGGGCGTGTGCGACACCGTGCTGGGCCTGCTGGACA GCTCCAGGGCGTGTGCGACACGGTGCTGGGCCTGCTGGACA < 41bp 0.526016054776524 0.805087446722133 0.14156052 0.8505433 prediction 0.558142783891217 Functional Gain - SFN ENSG00000175793 CDS Human protein_coding chr1:27189996 chr1:27189997 synonymous SNV . 0 22 hm5C_associated_SNPs_103891 0 0 0 0 0 Ribosome 0.500231643945126 0.500231643960614 0.7010866 3.09769987438813e-11 hm5C_site_57036 DeepMRMD:0.7010866;iRNA_m5C:3.09769987438813e-11 57037 chr6 117591781 117591781 1 + C A rs200640805 117591777 + 117591757 117591797 41 GCGCGTACCAGGCGCCAGTGCCCCCGCCGCTGGGCAGCCCT GCGCGTACCAGGCGCCAGTGCCCCAGCCGCTGGGCAGCCCT < 41bp 0.373165778008926 0.779046523589807 0.34598905 0.2808454 prediction 0.558093047179613 Functional Gain - VGLL2 ENSG00000170162 CDS Human protein_coding chr6:117591777 chr6:117591781 nonsynonymous SNV 0.894 1 25 hm5C_associated_SNPs_103892 0 0 0 0 1 exosome 0.500231643921093 0.500231643921087 0 0 hm5C_site_57037 DeepMRMD:0;iRNA_m5C:0 57038 chr12 12510111 12510111 1 + C A rs184467411 12510107 + 12510087 12510127 41 TGCGGCAAAGCCAGTGTCATCTGCCGGTTCTCTTAGGGCTC TGCGGCAAAGCCAGTGTCATCTGCAGGTTCTCTTAGGGCTC < 41bp 0.597210325890027 0.876253255045406 0.36285114 0.4704766 prediction 0.558085858310758 Functional Gain - BORCS5 ENSG00000165714 UTR5 Human protein_coding chr12:12510107 chr12:12510111 . . 0 25 hm5C_associated_SNPs_103893 0 0 1 0 0 insoluble cytoplasm 0.500231643921109 0.500230582878164 0 0 hm5C_site_57038 DeepMRMD:0;iRNA_m5C:0 57039 chr19 47856690 47856690 1 + C G BLCA 47856686 + 47856666 47856706 41 GCGGAGAGAGTGGCTGAGTTCCGCCGAGCCCTGTTGCACTA GCGGAGAGAGTGGCTGAGTTCCGCGGAGCCCTGTTGCACTA < 41bp 0.509927594999348 0.788954344284597 0.31650847 0.50219643 prediction 0.558053498570498 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47856686 chr19:47856690 nonsynonymous SNV 0.670 0 25 hm5C_associated_SNPs_103894 0 0 1 0 0 Ribosome 0.500231643921099 0.500231644534192 0.00439286000000005 1.22618559750265e-09 hm5C_site_57039 DeepMRMD:0.00439286000000005;iRNA_m5C:1.22618559750265e-09 57040 chr2 1481174 1481174 1 + C G rs575126367 1481173 + 1481153 1481193 41 CTGCGGCCTGTGCGCCCGAGCCCGGCATCCCCGGAGAGACC CTGCGGCCTGTGCGCCCGAGCGCGGCATCCCCGGAGAGACC < 41bp 0.533524407400813 0.812550868458494 0.8447591 0.91319287 prediction 0.558052922115361 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1481173 chr2:1481174 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_103895 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.13686754 0 hm5C_site_57040 DeepMRMD:0.13686754;iRNA_m5C:0 57041 chr8 10388999 10388999 1 + C G KIRP 10388995 + 10388975 10389015 41 TGCCCATCTGCCTCCCCACGCAGCCCGGCCCTGCCACATGG TGCCCATCTGCCTCCCCACGCAGCGCGGCCCTGCCACATGG < 41bp 0.479544422067334 0.779015872206111 0.05160165 0.19783932 prediction 0.558031744412223 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10388995 chr8:10388999 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_103896 0 0 0 0 1 exosome 0.500231643920693 0.500231643326887 0 0 hm5C_site_57041 DeepMRMD:0;iRNA_m5C:0 57042 chr7 143048842 143048842 1 + T G OV 143048839 + 143048819 143048859 41 CCTGAGGACAGGCCTGGGGCCACTGGAACAGGGGATGTGAT CCTGAGGACAGGCCTGGGGCCACGGGAACAGGGGATGTGAT < 41bp 0.394945260416347 0.779008897750042 0.2617006 0.6505177 prediction 0.558017795500084 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143048839 chr7:143048842 synonymous SNV . 0 24 hm5C_associated_SNPs_103897 0 0 0 0 0 exosome 0.50023164929146 0.500612849996493 0.3010354 0.000762401410065783 hm5C_site_57042 DeepMRMD:0.3010354;iRNA_m5C:0.000762401410065783 57043 chr19 34710310 34710310 1 + T C UCEC 34710308 + 34710288 34710328 41 TATCATAGCTCCAGGTGCTCCTTCAGCTCCAAGGAGAGGGC TATCATAGCTCCAGGTGCTCCTCCAGCTCCAAGGAGAGGGC < 41bp 0.536569273330268 0.815576752349665 0.067208916 0.9316491 prediction 0.558014958038793 Functional Gain - LSM14A ENSG00000257103 CDS Human protein_coding chr19:34710308 chr19:34710310 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_103898 0 0 1 0 1 Cytosol 0.500231643190526 0.500231643923683 0.8632982 1.46631373709738e-09 hm5C_site_57043 DeepMRMD:0.8632982;iRNA_m5C:1.46631373709738e-09 57044 chr1 152785001 152785001 1 + C G LIHC 152784997 + 152784977 152785017 41 AAGTGCCCTCCCAAGTGCCTCACCCCTAGATGCCCCCCAAA AAGTGCCCTCCCAAGTGCCTCACCGCTAGATGCCCCCCAAA < 41bp 0.498988807434727 0.778995271695445 0.011675566 0.048197836 prediction 0.55799054339089 Functional Gain - LCE1B ENSG00000196734 CDS Human protein_coding chr1:152784997 chr1:152785001 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_103899 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_57044 DeepMRMD:0;iRNA_m5C:0 57045 chr3 161164794 161164794 1 + C A rs567574304 161164790 + 161164770 161164810 41 CAGCAGGAAGAATGGCAGGCCAGGCAGGCAGAGCCATGGCC CAGCAGGAAGAATGGCAGGCCAGGAAGGCAGAGCCATGGCC < 41bp 0.584384531198251 0.86336745180515 0.13357231 0.12331125 prediction 0.557965841213798 Functional Gain - LINC02067 ENSG00000240567 ncRNA_exonic Human lincRNA chr3:161164790 chr3:161164794 . . 0 25 hm5C_associated_SNPs_103900 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_57045 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 57046 chr6 117591772 117591772 1 + C G LUAD 117591771 + 117591751 117591791 41 GGAATAGCGCGTACCAGGCGCCAGTGCCCCCGCCGCTGGGC GGAATAGCGCGTACCAGGCGCGAGTGCCCCCGCCGCTGGGC < 41bp 0.471038547826821 0.778963819014862 0.108171195 0.4933073 prediction 0.557927638029724 Functional Gain - VGLL2 ENSG00000170162 CDS Human protein_coding chr6:117591771 chr6:117591772 nonsynonymous SNV 0.927 1 22 hm5C_associated_SNPs_103901 0 0 0 0 1 exosome 0.500234888498873 0.500231643922067 0 0 hm5C_site_57046 DeepMRMD:0;iRNA_m5C:0 57047 chr10 114045943 114045943 1 + T A HNSC 114045939 + 114045919 114045959 41 TCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGC TCCTGCACCTACCACTCCACCTACATGGTGAACCAGGCTGC < 41bp 0.434608795435651 0.778953929880001 0.05282113 0.2888033 prediction 0.557907859760002 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114045939 chr10:114045943 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_103902 0 0 0 0 1 unknown 0.500231571121774 0.500231617704536 0 9.31655235181239e-08 hm5C_site_57047 DeepMRMD:0;iRNA_m5C:9.31655235181239e-08 57048 chr19 48953672 48953672 1 + C G LGG 48953671 + 48953651 48953691 41 CTGCAGGTGGTGGAGGAGCCCCAGGCCCTGGCAGCCTTCCT CTGCAGGTGGTGGAGGAGCCCGAGGCCCTGGCAGCCTTCCT < 41bp 0.469627351556616 0.778949785484662 0.90730995 0.91989064 prediction 0.557899570969324 Functional Gain - GRWD1 ENSG00000105447 CDS Human protein_coding chr19:48953671 chr19:48953672 nonsynonymous SNV 0.901 0 22 hm5C_associated_SNPs_103903 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.0251613799999999 0 hm5C_site_57048 DeepMRMD:0.0251613799999999;iRNA_m5C:0 57049 chr12 110957688 110957688 1 + C G HNSC 110957687 + 110957667 110957707 41 AACAAAGTAGAGCATCTTCACCACAGTCACTGTGTCTTTCA AACAAAGTAGAGCATCTTCACGACAGTCACTGTGTCTTTCA < 41bp 0.486211455967416 0.778946104255853 0.17441073 0.39467114 prediction 0.557892208511705 Functional Gain - RAD9B ENSG00000151164 CDS Human protein_coding chr12:110957687 chr12:110957688 nonsynonymous SNV 0.600 2 22 hm5C_associated_SNPs_103904 0 0 0 0 2 exosome 0.498899866021298 0.50023478661149 0 0.000469573222980024 hm5C_site_57049 DeepMRMD:0;iRNA_m5C:0.000469573222980024 57050 chr22 39497284 39497284 1 + T A UCEC 39497280 + 39497260 39497300 41 ATTTGCTTTATTAACGAGATCAAGTCCATGGGACTGGACGA ATTTGCTTTATTAACGAGATCAAGACCATGGGACTGGACGA < 41bp 0.535541963517464 0.814471806481147 0.046186298 0.037801564 prediction 0.557859685927365 Functional Gain - APOBEC3H ENSG00000100298 CDS Human protein_coding chr22:39497280 chr22:39497284 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_103905 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_57050 DeepMRMD:0;iRNA_m5C:0 57051 chr3 97888236 97888236 1 + T A STAD 97888232 + 97888212 97888252 41 CACAGTCTTAGAAAAGAAATCTGATAAGGGTGTAAGGAAAG CACAGTCTTAGAAAAGAAATCTGAAAAGGGTGTAAGGAAAG < 41bp 0.506833145269423 0.785745152224249 0.09943625 0.0737662 prediction 0.557824013909652 Functional Gain - OR5H15 ENSG00000233412 CDS Human protein_coding chr3:97888232 chr3:97888236 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103906 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_57051 DeepMRMD:0;iRNA_m5C:0 57052 chr14 94640813 94640813 1 + C G rs114546840 94640812 + 94640792 94640832 41 CCCGGCGGTCCATGCATCCGCCGCCGCCCGCCGCCGCGATG CCCGGCGGTCCATGCATCCGCGGCCGCCCGCCGCCGCGATG < 41bp 0.491375504967411 0.778905992113491 0.19669104 0.4416225 prediction 0.557811984226982 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94640812 chr14:94640813 nonsynonymous SNV 0.611 0 22 hm5C_associated_SNPs_103907 0 0 1 0 0 cytosol 0.500231810046701 0.500231644497507 0 0 hm5C_site_57052 DeepMRMD:0;iRNA_m5C:0 57053 chrX 135291488 135291488 1 + C A OV 135291484 + 135291464 135291504 41 CACGGGAAACGCTTGCCTCTCACCCTGTTTCCCAGCGCCAA CACGGGAAACGCTTGCCTCTCACCATGTTTCCCAGCGCCAA < 41bp 0.38766918871351 0.778903738631012 0.08393836 0.14797238 prediction 0.557807477262024 Functional Gain - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291484 chrX:135291488 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_103908 0 0 0 0 1 chromatin 0.500231643921085 0.500231643921094 0 1.88737914186277e-14 hm5C_site_57053 DeepMRMD:0;iRNA_m5C:1.88737914186277e-14 57054 chr7 75517479 75517479 1 + C A UCEC 75517475 + 75517455 75517495 41 CCTCCGTACCAGCCTGCCTCCGGCCTGTGCTATGTGCAGAA CCTCCGTACCAGCCTGCCTCCGGCATGTGCTATGTGCAGAA < 41bp 0.628785280971304 0.907684477922792 0.23306647 0.3412705 prediction 0.557798393902976 Functional Gain - RHBDD2 ENSG00000005486 CDS Human protein_coding chr7:75517475 chr7:75517479 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_103909 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.50023164392109 0 0 hm5C_site_57054 DeepMRMD:0;iRNA_m5C:0 57055 chr1 16332528 16332528 1 + C A HNSC 16332524 + 16332504 16332544 41 CAGCAACCGCATCACCACCCCAAGCCCCCAGTCCCAATCGA CAGCAACCGCATCACCACCCCAAGACCCCAGTCCCAATCGA < 41bp 0.392313277802853 0.778875300051491 0.19532686 0.2895164 prediction 0.557750600102981 Functional Gain - C1orf64 ENSG00000183888 CDS Human protein_coding chr1:16332524 chr1:16332528 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_103910 0 0 0 0 0 Cytosol 0.500231654493505 0.500231680662455 0 5.23379000139101e-08 hm5C_site_57055 DeepMRMD:0;iRNA_m5C:5.23379000139101e-08 57056 chr1 215259724 215259724 1 + C A LUAD 215259720 + 215259700 215259740 41 GTTGTTGTCAGTGGCGGCACCTGACTTGCTGGATCCTAAAT GTTGTTGTCAGTGGCGGCACCTGAATTGCTGGATCCTAAAT < 41bp 0.385357271563913 0.778870152614478 0.090029925 0.4451248 prediction 0.557740305228955 Functional Gain - KCNK2 ENSG00000082482 CDS Human protein_coding chr1:215259720 chr1:215259724 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_103911 0 0 0 0 1 exosome 0.500231654590681 0.500231649304881 0 0 hm5C_site_57056 DeepMRMD:0;iRNA_m5C:0 57057 chr1 109474040 109474040 1 + C A LIHC 109474036 + 109474016 109474056 41 CCTGGAGTAACACTGGATCACAGACTGCAAAGGCCCACGCT CCTGGAGTAACACTGGATCACAGAATGCAAAGGCCCACGCT < 41bp 0.575771899361438 0.85462265881721 0.111530334 0.29262114 prediction 0.557701518911544 Functional Gain - CLCC1;GPSM2 ENSG00000121940 CDS Human protein_coding chr1:109474036 chr1:109474040 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_103912 0 0 0 0 0 unknown 0.500231643921093 0.500231643921093 0 0 hm5C_site_57057 DeepMRMD:0;iRNA_m5C:0 57058 chr16 30594496 30594496 1 + G C rs116446996 30594497 - 30594477 30594517 41 CTCCGGGGAGCGGCCCTTCTCCTGCGGCCAGTGTCAGGCGC CTCCGGGGAGCGGCCCTTCTCGTGCGGCCAGTGTCAGGCGC < 41bp 0.555311998372484 0.834161976909102 0.5864741 0.9276349 prediction 0.557699957073237 Functional Gain - ZNF785 ENSG00000197162 CDS Human protein_coding chr16:30594497 chr16:30594496 synonymous SNV . 0 22 hm5C_associated_SNPs_103913 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921093 0.6823216 2.22044604925031e-16 hm5C_site_57058 DeepMRMD:0.6823216;iRNA_m5C:2.22044604925031e-16 57059 chr1 55207175 55207175 1 + C G GBM 55207174 + 55207154 55207194 41 CTCCGGGGGAGAAAGGTGTACCAGATACGATGACTAAGCCA CTCCGGGGGAGAAAGGTGTACGAGATACGATGACTAAGCCA < 41bp 0.52902613463647 0.807862247402173 0.33805925 0.6429627 prediction 0.557672225531406 Functional Gain - TTC4 ENSG00000243725 CDS Human protein_coding chr1:55207174 chr1:55207175 nonsynonymous SNV 0.969 1 22 hm5C_associated_SNPs_103914 0 0 1 0 1 cytosol 0.500231643921179 0.500231652769472 0.2859254 1.76965850862132e-08 hm5C_site_57059 DeepMRMD:0.2859254;iRNA_m5C:1.76965850862132e-08 57060 chr9 134165737 134165737 1 + T G UCEC 134165735 + 134165715 134165755 41 TCCATGGTCAAGCTCATCGGCATCACGGGCCACGGCATCCC TCCATGGTCAAGCTCATCGGCAGCACGGGCCACGGCATCCC < 41bp 0.571761914611518 0.850587043792646 0.24551448 0.42187488 prediction 0.557650258362257 Functional Gain - PLPP7 ENSG00000160539 CDS Human protein_coding chr9:134165735 chr9:134165737 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_103915 0 0 0 0 1 exosome 0.500231637434729 0.500231643799197 0 1.27289370155381e-08 hm5C_site_57060 DeepMRMD:0;iRNA_m5C:1.27289370155381e-08 57061 chr8 143560847 143560847 1 + C G rs200224393 143560846 + 143560826 143560866 41 GTGCGGCACCCAGCGGTGTCCCGGTGAGGCCCCTCCTACCT GTGCGGCACCCAGCGGTGTCCGGGTGAGGCCCCTCCTACCT < 41bp 0.542148901133606 0.820968375182991 0.49019808 0.8906636 prediction 0.55763894809877 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143560846 chr8:143560847 synonymous SNV . 0 22 hm5C_associated_SNPs_103916 0 0 0 0 1 Nucleus 0.500231653830883 0.500231644481382 0.7813272 0 hm5C_site_57061 DeepMRMD:0.7813272;iRNA_m5C:0 57062 chr7 56564250 56564250 1 + C A LUAD 56564246 + 56564226 56564266 41 TTACCTCCACCTCCAGGGCACAGACAGGGGGAGCTCTGTCT TTACCTCCACCTCCAGGGCACAGAAAGGGGGAGCTCTGTCT < 41bp 0.429787051566405 0.778817519689017 0.04675868 0.17961603 prediction 0.557635039378034 Functional Gain - DKFZp434L192 ENSG00000261275 ncRNA_exonic Human lincRNA chr7:56564246 chr7:56564250 . . 0 25 hm5C_associated_SNPs_103917 0 0 0 1 0 unknown 0.500231643921092 0.500231643921239 0 2.93320923105966e-13 hm5C_site_57062 DeepMRMD:0;iRNA_m5C:2.93320923105966e-13 57063 chr16 90160820 90160820 1 + C A rs62052672 90160816 + 90160796 90160836 41 CCTACCACGGGGACAGCCACCTGCCGCTGGAGCGCGTCAAC CCTACCACGGGGACAGCCACCTGCAGCTGGAGCGCGTCAAC < 41bp 0.616002529683685 0.894817697052532 0.34128788 0.55822694 prediction 0.557630334737695 Functional Gain - PRDM7;FAM157B ENSG00000261812 CDS Human transcribed_unprocessed_pseudogene chr16:90160816 chr16:90160820 unknown . 0 25 hm5C_associated_SNPs_103918 0 0 0 0 2 unknown 0.500231643921092 0.500231643891898 0.11645388 0 hm5C_site_57063 DeepMRMD:0.11645388;iRNA_m5C:0 57064 chr12 6568066 6568066 1 + T A rs142002557 6568062 + 6568042 6568082 41 CTTACACCTGCCAGGTCACACACATCTCTCTGGAGGAGCCC CTTACACCTGCCAGGTCACACACAACTCTCTGGAGGAGCCC < 41bp 0.466579317336003 0.778814137921658 0.37445354 0.73868173 prediction 0.557628275843317 Functional Gain - TAPBPL ENSG00000139192 CDS Human protein_coding chr12:6568062 chr12:6568066 nonsynonymous SNV 0.954 0 25 hm5C_associated_SNPs_103919 0 0 0 0 1 chromatin 0.500231643949834 0.500231643921092 0.47736346 0 hm5C_site_57064 DeepMRMD:0.47736346;iRNA_m5C:0 57065 chr15 39544747 39544747 1 + T G HNSC 39544745 + 39544725 39544765 41 AGAACATGAGTTCAACAAAGCGTGTGTGCACTATATTGGCT AGAACATGAGTTCAACAAAGCGGGTGTGCACTATATTGGCT < 41bp 0.470316628779392 0.778806439995489 0.26207787 0.8150357 prediction 0.557612879990977 Functional Gain - C15orf54 ENSG00000175746 CDS Human lincRNA chr15:39544745 chr15:39544747 synonymous SNV . 0 23 hm5C_associated_SNPs_103920 0 0 0 0 0 unknown 0.500247608212498 0.50023164392109 0.6300714 0 hm5C_site_57065 DeepMRMD:0.6300714;iRNA_m5C:0 57066 chr16 3108229 3108229 1 + C A rs59807543 3108225 + 3108205 3108245 41 CCCTCCGGACAGCTGGTGTCCCCGCGACCCGCACGGCTGCA CCCTCCGGACAGCTGGTGTCCCCGAGACCCGCACGGCTGCA < 41bp 0.378223719734869 0.778804786894173 0.8028996 0.73956454 prediction 0.557609573788346 Functional Gain - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3108225 chr16:3108229 synonymous SNV . 0 25 hm5C_associated_SNPs_103921 0 0 1 0 1 chromatin 0.500231656995672 0.500231643921916 0 0 hm5C_site_57066 DeepMRMD:0;iRNA_m5C:0 57067 chr5 140589755 140589755 1 + T A STAD 140589751 + 140589731 140589771 41 AACATCACCATCACCGTCACCGACTTGGGGACCCCCAGGCT AACATCACCATCACCGTCACCGACATGGGGACCCCCAGGCT < 41bp 0.470632558494356 0.778777343081742 0.02861616 0.050991774 prediction 0.557554686163484 Functional Gain - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140589751 chr5:140589755 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103922 0 0 0 0 0 exosome 0.500238662623775 0.500238768730682 0 2.12213814743123e-07 hm5C_site_57067 DeepMRMD:0;iRNA_m5C:2.12213814743123e-07 57068 chr20 34487475 34487475 1 + C G rs553915565 34487474 + 34487454 34487494 41 CACTGGAGCCAGAAGAGAGCCCGGGAAAGAGGCATGTCCAA CACTGGAGCCAGAAGAGAGCCGGGGAAAGAGGCATGTCCAA < 41bp 0.531917496325819 0.810677321196161 0.5523232 0.9292669 prediction 0.557519649740684 Functional Gain - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34487474 chr20:34487475 nonsynonymous SNV 0.979 1 22 hm5C_associated_SNPs_103923 0 0 1 0 1 Nucleus 0.500231643921085 0.500231643921091 0.7538874 1.22124532708767e-14 hm5C_site_57068 DeepMRMD:0.7538874;iRNA_m5C:1.22124532708767e-14 57069 chr15 100340140 100340140 1 + G C PAAD 100340144 - 100340124 100340164 41 GGAGGAGTCGGCAGAGCAGGCAGACCAAGGAGTTCATCTTC GGAGGAGTCGGCAGAGCAGGCAGAGCAAGGAGTTCATCTTC < 41bp 0.494543477788631 0.77875242405294 0.9072627 0.9026381 prediction 0.55750484810588 Functional Gain - DNM1P46 ENSG00000182397 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:100340144 chr15:100340140 . . 0 25 hm5C_associated_SNPs_103924 0 0 0 0 1 unknown 0.50023164524101 0.500231644202409 0 0 hm5C_site_57069 DeepMRMD:0;iRNA_m5C:0 57070 chr5 78915478 78915478 1 + C G LUAD 78915477 + 78915457 78915497 41 CCAGTGAACAAGAGCATGTTCCCAAACTCAATTTTGGGTCG CCAGTGAACAAGAGCATGTTCGCAAACTCAATTTTGGGTCG < 41bp 0.521275522289198 0.800016041352172 0.06624183 0.18781304 prediction 0.557481038125948 Functional Gain - PAPD4 ENSG00000164329 CDS Human protein_coding chr5:78915477 chr5:78915478 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_103925 0 0 1 0 1 Ribosome 0.500231642314222 0.500231643892267 0 3.15609027801145e-09 hm5C_site_57070 DeepMRMD:0;iRNA_m5C:3.15609027801145e-09 57071 chr11 44951067 44951067 1 + T A rs73456446 44951063 + 44951043 44951083 41 AGCCAGACCCTGGGCCCTCTCTCCTCACTGCACCAGGACCT AGCCAGACCCTGGGCCCTCTCTCCACACTGCACCAGGACCT < 41bp 0.462136697737013 0.778712296449832 0.29203144 0.94263196 prediction 0.557424592899664 Functional Gain - TSPAN18 ENSG00000157570 UTR3 Human protein_coding chr11:44951063 chr11:44951067 . . 0 25 hm5C_associated_SNPs_103926 0 0 0 0 0 Cytosol 0.500231643921156 0.500231643923177 0.88526392 4.04121180963557e-12 hm5C_site_57071 DeepMRMD:0.88526392;iRNA_m5C:4.04121180963557e-12 57072 chrX 106845685 106845685 1 + C G rs773055381 106845684 + 106845664 106845704 41 GATGGCCGTGTTCTCACTGCCCGAGGAGGTGTACCGGAAGC GATGGCCGTGTTCTCACTGCCGGAGGAGGTGTACCGGAAGC < 41bp 0.545312222361007 0.824022081571253 0.6997843 0.9101874 prediction 0.557419718420491 Functional Gain - FRMPD3 ENSG00000147234 CDS Human protein_coding chrX:106845684 chrX:106845685 synonymous SNV . 0 22 hm5C_associated_SNPs_103927 0 0 0 0 0 exosome 0.500231643921191 0.500231643921092 0.4208062 0 hm5C_site_57072 DeepMRMD:0.4208062;iRNA_m5C:0 57073 chr12 54402923 54402923 1 + C A rs557911241 54402919 + 54402899 54402939 41 AGCACCGAGGCGCCCCCCAACCTGCCCAGCCCCCAGCCCAC AGCACCGAGGCGCCCCCCAACCTGACCAGCCCCCAGCCCAC < 41bp 0.450629519686747 0.778702150473369 0.16157317 0.33363536 prediction 0.557404300946738 Functional Gain - HOXC8 ENSG00000037965 UTR5 Human protein_coding chr12:54402919 chr12:54402923 . . 0 25 hm5C_associated_SNPs_103928 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0 1.11022302462516e-15 hm5C_site_57073 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 57074 chr4 74719119 74719119 1 + C G TGCT 74719118 + 74719098 74719138 41 TCCCGCCTCACCCGCGCCACCCGCCAGGAGATGCTGTTCTT TCCCGCCTCACCCGCGCCACCGGCCAGGAGATGCTGTTCTT < 41bp 0.527058749276783 0.805760762396584 0.07992783 0.15048122 prediction 0.557404026239601 Functional Gain - PF4V1 ENSG00000109272 CDS Human protein_coding chr4:74719118 chr4:74719119 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_103929 0 0 0 0 1 exosome 0.500231642490868 0.50023164407597 0 3.17020498741272e-09 hm5C_site_57074 DeepMRMD:0;iRNA_m5C:3.17020498741272e-09 57075 chrX 54578063 54578063 1 + C G BLCA 54578062 + 54578042 54578082 41 TGGATGCTCCAGGCATTGTCCCAGGGCCCAACTCAGAGGTG TGGATGCTCCAGGCATTGTCCGAGGGCCCAACTCAGAGGTG < 41bp 0.468220938130681 0.778698569884037 0.8915317 0.92635065 prediction 0.557397139768075 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54578062 chrX:54578063 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_103930 0 0 1 0 1 Nucleus 0.500231646034001 0.500231177964602 0.0696379 0 hm5C_site_57075 DeepMRMD:0.0696379;iRNA_m5C:0 57076 chr9 34343337 34343337 1 + C A rs143347739 34343333 + 34343313 34343353 41 CTCTCCCATGAGCACCAAGCCTACCGCTGGCTGGGGCTGGA CTCTCCCATGAGCACCAAGCCTACAGCTGGCTGGGGCTGGA < 41bp 0.640413985105215 0.919110198162429 0.211418 0.2235052 prediction 0.557392426114429 Functional Gain - NUDT2 ENSG00000164978 CDS Human protein_coding chr9:34343333 chr9:34343337 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_103931 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921128 0 6.81676937119846e-14 hm5C_site_57076 DeepMRMD:0;iRNA_m5C:6.81676937119846e-14 57077 chr18 63476993 63476993 1 + C A rs61741837 63476989 + 63476969 63477009 41 TTCCATCAAATACATCTTGTCAGGCGAAGGGGCAAGTTCCA TTCCATCAAATACATCTTGTCAGGAGAAGGGGCAAGTTCCA < 41bp 0.383635616797963 0.778689089963511 0.40647763 0.52508926 prediction 0.557378179927021 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63476989 chr18:63476993 synonymous SNV . 0 25 hm5C_associated_SNPs_103932 0 0 0 0 1 exosome 0.500231644471721 0.500226233057213 0.05017852 0 hm5C_site_57077 DeepMRMD:0.05017852;iRNA_m5C:0 57078 chr4 71068595 71068595 1 + T A STAD 71068591 + 71068571 71068611 41 CACAACCAATGTTTTCACTTCTGCTGTAGACCAAACTATTA CACAACCAATGTTTTCACTTCTGCAGTAGACCAAACTATTA < 41bp 0.457075083713921 0.778680785467444 0.0781503 0.13307175 prediction 0.557361570934889 Functional Gain - ODAM ENSG00000109205 CDS Human protein_coding chr4:71068591 chr4:71068595 synonymous SNV . 0 25 hm5C_associated_SNPs_103933 0 0 1 0 1 exosome 0.500230077531125 0.500231253162067 0 2.35126188385948e-06 hm5C_site_57078 DeepMRMD:0;iRNA_m5C:2.35126188385948e-06 57079 chr1 158450506 158450506 1 + T G OV 158450504 + 158450484 158450524 41 GGCTGTGCTTCCTTCATCTACCTGAGGCCTACAGCAAACTA GGCTGTGCTTCCTTCATCTACCGGAGGCCTACAGCAAACTA < 41bp 0.558301443146931 0.836973436382789 0.10679057 0.80558 prediction 0.557343986471717 Functional Gain - OR10R2 ENSG00000198965 CDS Human protein_coding chr1:158450504 chr1:158450506 nonsynonymous SNV 0.974 3 23 hm5C_associated_SNPs_103934 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.61116 0 hm5C_site_57079 DeepMRMD:0.61116;iRNA_m5C:0 57080 chr10 43600524 43600524 1 + C A UCEC 43600520 + 43600500 43600540 41 GTGCACCGTGCACGCCGGCGCGCGCGAGGAGGTGGTGATGG GTGCACCGTGCACGCCGGCGCGCGAGAGGAGGTGGTGATGG < 41bp 0.629638009686008 0.90830420452902 0.4301542 0.7445614 prediction 0.557332389686024 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43600520 chr10:43600524 synonymous SNV . 0 25 hm5C_associated_SNPs_103935 0 0 0 0 0 Cytosol 0.500231644474249 0.500230460271843 0.4891228 0 hm5C_site_57080 DeepMRMD:0.4891228;iRNA_m5C:0 57081 chrX 65414993 65414993 1 + C A LUSC 65414989 + 65414969 65415009 41 ACCATTCAGGTGGTCTTCTACAACCGTGCCTCCCAGCCATT ACCATTCAGGTGGTCTTCTACAACAGTGCCTCCCAGCCATT < 41bp 0.365905625105429 0.7786625286422 0.06491396 0.062109977 prediction 0.557325057284399 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65414989 chrX:65414993 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_103936 0 0 0 0 2 Nucleus 0.50023164392109 0.500231661298925 0 3.47556712299024e-08 hm5C_site_57081 DeepMRMD:0;iRNA_m5C:3.47556712299024e-08 57082 chr22 51183575 51183575 1 + C A rs531270968 51183571 + 51183551 51183591 41 CTTGAAGGGGAAGACCTATTCCGACGGAAAGAACCATTATG CTTGAAGGGGAAGACCTATTCCGAAGGAAAGAACCATTATG < 41bp 0.408525839678672 0.778657705929295 0.7323791 0.69319785 prediction 0.55731541185859 Functional Gain - ACR ENSG00000100312 CDS Human protein_coding chr22:51183571 chr22:51183575 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_103937 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57082 DeepMRMD:0;iRNA_m5C:0 57083 chr11 94731666 94731666 1 + T A OV 94731662 + 94731642 94731682 41 GAGCAGCGCTGGGCCTGAGACAACTCCCTTCCCACTGGGCC GAGCAGCGCTGGGCCTGAGACAACACCCTTCCCACTGGGCC < 41bp 0.473814550399894 0.778649107616462 0.106077164 0.1469014 prediction 0.557298215232925 Functional Gain - KDM4D ENSG00000186280 CDS Human protein_coding chr11:94731662 chr11:94731666 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_103938 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_57083 DeepMRMD:0;iRNA_m5C:0 57084 chr1 153941929 153941929 1 + C G PRAD 153941928 + 153941908 153941948 41 GCCCCAGTGCCCTGTACAACCCTGGTGAGTCTTGGTGTCAG GCCCCAGTGCCCTGTACAACCGTGGTGAGTCTTGGTGTCAG < 41bp 0.543341347742988 0.821989948737358 0.29748076 0.86985344 prediction 0.557297201988741 Functional Gain - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153941928 chr1:153941929 nonsynonymous SNV 0.832 0 22 hm5C_associated_SNPs_103939 0 0 0 1 1 exosome 0.500231643911147 0.500231643891494 0.73970688 0 hm5C_site_57084 DeepMRMD:0.73970688;iRNA_m5C:0 57085 chr19 7051491 7051491 1 + C G rs563715039 7051487 + 7051467 7051507 41 CCCCAGGAATGGGTTGTCAGCTCCCACCGCCCCTCTCTGGC CCCCAGGAATGGGTTGTCAGCTCCGACCGCCCCTCTCTGGC < 41bp 0.495703377619104 0.778645957618755 0.055445433 0.2175636 prediction 0.55729191523751 Functional Gain - MBD3L2 ENSG00000230522 CDS Human protein_coding chr19:7051487 chr19:7051491 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_103940 0 0 0 0 0 unknown 0.500231642103327 0.500231620698401 0 0 hm5C_site_57085 DeepMRMD:0;iRNA_m5C:0 57086 chr1 173735378 173735378 1 + T C rs7536773 173735376 + 173735356 173735396 41 TAGCAGTACTTGGAGGCTTTCTTTATGCTGTGGGTGGCCAG TAGCAGTACTTGGAGGCTTTCTCTATGCTGTGGGTGGCCAG < 41bp 0.47863244118069 0.778626801375031 0.14735919 0.92791957 prediction 0.557253602750063 Functional Gain - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173735376 chr1:173735378 synonymous SNV . 0 23 hm5C_associated_SNPs_103941 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.85583914 0 hm5C_site_57086 DeepMRMD:0.85583914;iRNA_m5C:0 57087 chr12 7473395 7473395 1 + T G BRCA 7473393 + 7473373 7473413 41 GGATGCTCGTGCAAAAAGACCTTAAGAGGTACTTGGGCAGA GGATGCTCGTGCAAAAAGACCTGAAGAGGTACTTGGGCAGA < 41bp 0.457930414122807 0.778608172783782 0.28754312 0.46544313 prediction 0.557216345567565 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7473393 chr12:7473395 synonymous SNV . 0 23 hm5C_associated_SNPs_103942 0 0 0 0 2 exosome 0.500231643921682 0.500231660894505 0 3.39456445175301e-08 hm5C_site_57087 DeepMRMD:0;iRNA_m5C:3.39456445175301e-08 57088 chr1 1420466 1420466 1 + T A COAD 1420462 + 1420442 1420482 41 ATGCGACAGCCGTCACTGGCCGCTTCATCGAGGCTCGGCTG ATGCGACAGCCGTCACTGGCCGCTACATCGAGGCTCGGCTG < 41bp 0.461980605683744 0.778602202652996 0.01788041 0.10414782 prediction 0.557204405305992 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1420462 chr1:1420466 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_103943 0 0 1 0 2 Ribosome 0.500231944199048 0.500231825121759 0 0 hm5C_site_57088 DeepMRMD:0;iRNA_m5C:0 57089 chr9 35733461 35733461 1 + T G UCEC 35733459 + 35733439 35733479 41 AGAAGGAGGGGCTTATTCTGCCTGAGACACTTCCTCTCACT AGAAGGAGGGGCTTATTCTGCCGGAGACACTTCCTCTCACT < 41bp 0.440896610616481 0.778599774113998 0.3379901 0.8898256 prediction 0.557199548227997 Functional Gain - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733459 chr9:35733461 synonymous SNV . 0 23 hm5C_associated_SNPs_103944 0 0 1 0 2 Endoplasmic reticulum 0.500232148327024 0.500231603558873 0.7796512 0 hm5C_site_57089 DeepMRMD:0.7796512;iRNA_m5C:0 57090 chr19 920642 920642 1 + T A rs350132 920638 + 920618 920658 41 CCGCAGCCCCACACGCGGAGCTGCTCCGCCTGGGGTCCCAC CCGCAGCCCCACACGCGGAGCTGCACCGCCTGGGGTCCCAC < 41bp 0.490483028211727 0.778582235121742 0.17543954 0.14806843 prediction 0.557164470243483 Functional Gain - KISS1R ENSG00000116014 CDS Human protein_coding chr19:920638 chr19:920642 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_103945 0 0 0 0 0 nucleus 0.500231643921103 0.500231643921085 0 0 hm5C_site_57090 DeepMRMD:0;iRNA_m5C:0 57091 chr2 97217964 97217964 1 + C A KIRC 97217960 + 97217940 97217980 41 TTCGACAGTGCCCTCCGCCACAGACTTTGCCCGGCCTCATC TTCGACAGTGCCCTCCGCCACAGAATTTGCCCGGCCTCATC < 41bp 0.39652865727403 0.778575907879759 0.43348357 0.44330397 prediction 0.557151815759518 Functional Gain - ARID5A ENSG00000196843 CDS Human protein_coding chr2:97217960 chr2:97217964 nonsynonymous SNV 0.873 2 25 hm5C_associated_SNPs_103946 0 0 1 0 0 Cytosol 0.500231645009743 0.500231657319573 0 2.46196607545102e-08 hm5C_site_57091 DeepMRMD:0;iRNA_m5C:2.46196607545102e-08 57092 chr4 71255436 71255436 1 + T A LUSC 71255432 + 71255412 71255452 41 ATATCCACCTGGACCGCTGGCTCCTCCTCAACCTTTTGGCC ATATCCACCTGGACCGCTGGCTCCACCTCAACCTTTTGGCC < 41bp 0.454126233535474 0.778575401810399 0.029642195 0.1962094 prediction 0.557150803620798 Functional Gain - SMR3B ENSG00000171201 CDS Human protein_coding chr4:71255432 chr4:71255436 synonymous SNV . 0 25 hm5C_associated_SNPs_103947 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_57092 DeepMRMD:0;iRNA_m5C:0 57093 chr8 9605665 9605665 1 + T A LUAD 9605661 + 9605641 9605681 41 GCTGTGCGCCCTCCTCCTAGCGCATGGTGCAGACCCCACCA GCTGTGCGCCCTCCTCCTAGCGCAAGGTGCAGACCCCACCA < 41bp 0.566392740153349 0.844962031899553 0.81657326 0.9122611 prediction 0.557138583492408 Functional Gain - TNKS ENSG00000173273 CDS Human protein_coding chr8:9605661 chr8:9605665 nonsynonymous SNV 0.814 3 25 hm5C_associated_SNPs_103948 0 0 1 0 1 Nucleus 0.500231643875741 0.500231643921093 0.19137568 9.07038888442457e-11 hm5C_site_57093 DeepMRMD:0.19137568;iRNA_m5C:9.07038888442457e-11 57094 chr16 57397950 57397950 1 + C G rs170360 57397949 + 57397929 57397969 41 TGCCTGGGATGTTGCTGACACCCAGAAAGTCCCACCACCTG TGCCTGGGATGTTGCTGACACGCAGAAAGTCCCACCACCTG < 41bp 0.532861296601914 0.811427131264089 0.045334637 0.1366936 prediction 0.55713166932435 Functional Gain - CCL22 ENSG00000102962 UTR3 Human protein_coding chr16:57397949 chr16:57397950 . . 0 22 hm5C_associated_SNPs_103949 0 0 0 0 0 Nucleus 0.500231643921088 0.500231643921094 0 1.19904086659517e-14 hm5C_site_57094 DeepMRMD:0;iRNA_m5C:1.19904086659517e-14 57095 chr12 107914391 107914391 1 + C A UCEC 107914387 + 107914367 107914407 41 CGAGCAGTCTTTGCTGGCCACGCGCGTAGGCAGCATCGCCG CGAGCAGTCTTTGCTGGCCACGCGAGTAGGCAGCATCGCCG < 41bp 0.371399881771087 0.778563534947952 0.27743536 0.6417136 prediction 0.557127069895905 Functional Gain - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:107914387 chr12:107914391 synonymous SNV . 0 25 hm5C_associated_SNPs_103950 0 0 0 0 1 cytosol 0.500260331272338 0.500232240291359 0.2834272 0 hm5C_site_57095 DeepMRMD:0.2834272;iRNA_m5C:0 57096 chr20 33762679 33762679 1 + C A LUSC 33762675 + 33762655 33762695 41 AGGAGCCCGAGAGCTGGGCGCGCACGCAGAGTGGCCTGCAG AGGAGCCCGAGAGCTGGGCGCGCAAGCAGAGTGGCCTGCAG < 41bp 0.630597152564819 0.909138381735156 0.277615 0.698735 prediction 0.557082458340674 Functional Gain - PROCR ENSG00000101000 CDS Human protein_coding chr20:33762675 chr20:33762679 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_103951 0 0 0 0 1 Endoplasmic reticulum 0.500231655193161 0.50023172529116 0.39747 1.40195997255788e-07 hm5C_site_57096 DeepMRMD:0.39747;iRNA_m5C:1.40195997255788e-07 57097 chr9 79118859 79118859 1 + C G rs142834264 79118858 + 79118838 79118878 41 GGCATTGTGGAAAGAGGGGACCAGGGTGGCTGGGGAAGAGG GGCATTGTGGAAAGAGGGGACGAGGGTGGCTGGGGAAGAGG < 41bp 0.490356673694677 0.778536980375082 0.74464357 0.82234514 prediction 0.557073960750164 Functional Gain - GCNT1 ENSG00000187210 UTR3 Human protein_coding chr9:79118858 chr9:79118859 . . 0 22 hm5C_associated_SNPs_103952 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.15540314 0 hm5C_site_57097 DeepMRMD:0.15540314;iRNA_m5C:0 57098 chr1 212799278 212799278 1 + G T UCEC 212799282 - 212799262 212799302 41 GCTCATGGATGCGCTGGAAACATGCTCTGAGGACTTGCCTG GCTCATGGATGCGCTGGAAACATGATCTGAGGACTTGCCTG < 41bp 0.59536585066929 0.873890332485498 0.15881884 0.24805897 prediction 0.557048963632416 Functional Gain - FAM71A ENSG00000162771 CDS Human protein_coding chr1:212799282 chr1:212799278 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_103953 0 0 0 0 0 exosome 0.500544978447468 0.50030882679909 0 0 hm5C_site_57098 DeepMRMD:0;iRNA_m5C:0 57099 chr12 125900095 125900095 1 + T A rs3809261 125900091 + 125900071 125900111 41 CCACAGAATTAAGGCGGCAGCAGGTGTGAAGATAACGGCAG CCACAGAATTAAGGCGGCAGCAGGAGTGAAGATAACGGCAG < 41bp 0.490862188503652 0.778521481085012 0.59777045 0.83471024 prediction 0.557042962170023 Functional Gain - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:125900091 chr12:125900095 synonymous SNV . 0 25 hm5C_associated_SNPs_103954 0 0 0 0 1 exosome 0.500231643932999 0.500231643921128 0.47387958 0 hm5C_site_57099 DeepMRMD:0.47387958;iRNA_m5C:0 57100 chr11 55944484 55944484 1 + C A LUAD 55944480 + 55944460 55944500 41 TATGTGGCCATTGTGAGTCCCTTGCTTTACACTGTAGCCAT TATGTGGCCATTGTGAGTCCCTTGATTTACACTGTAGCCAT < 41bp 0.399011846362143 0.778516620298833 0.014975131 0.11555907 prediction 0.557033240597667 Functional Gain - OR5J2 ENSG00000174957 CDS Human protein_coding chr11:55944480 chr11:55944484 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_103955 0 0 0 0 0 unknown 0.500231643856301 0.500231643921092 0 1.29582344854384e-10 hm5C_site_57100 DeepMRMD:0;iRNA_m5C:1.29582344854384e-10 57101 chr17 65028738 65028738 1 + C A rs139718973 65028734 + 65028714 65028754 41 GCCCCCAGGAAAGGACGCATCCACCGGTAGCGGCCCCAGCT GCCCCCAGGAAAGGACGCATCCACAGGTAGCGGCCCCAGCT < 41bp 0.41374098943874 0.778510700855672 0.06334278 0.17270693 prediction 0.557021401711343 Functional Gain - CACNG4 ENSG00000265664 ncRNA_intronic Human antisense chr17:65028734 chr17:65028738 . . 0 25 hm5C_associated_SNPs_103956 0 0 0 0 0 Endoplasmic reticulum 0.500231643920978 0.500231643921092 0 2.28261853862932e-13 hm5C_site_57101 DeepMRMD:0;iRNA_m5C:2.28261853862932e-13 57102 chr16 69373979 69373979 1 + C A GBM 69373975 + 69373955 69373995 41 TACTGTTTCCGTCTGCACAACGACCGGGTGTACTATGTGAG TACTGTTTCCGTCTGCACAACGACAGGGTGTACTATGTGAG < 41bp 0.374516427325966 0.778501836953121 0.047451317 0.066135764 prediction 0.557003673906242 Functional Gain - NIP7 ENSG00000132603 CDS Human protein_coding chr16:69373975 chr16:69373979 synonymous SNV . 0 25 hm5C_associated_SNPs_103957 0 0 1 0 2 Ribosome 0.500231643920892 0.500231643899096 0 0 hm5C_site_57102 DeepMRMD:0;iRNA_m5C:0 57103 chr1 1421933 1421933 1 + C A PCPG 1421929 + 1421909 1421949 41 ACTCTTCTTGTCCAGAAACTCGCCCTGCACTCAGGCATGGA ACTCTTCTTGTCCAGAAACTCGCCATGCACTCAGGCATGGA < 41bp 0.353272258116049 0.778499985298666 0.20743397 0.3457865 prediction 0.556999970597332 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1421929 chr1:1421933 nonsynonymous SNV 0.028 1 25 hm5C_associated_SNPs_103958 0 0 0 0 1 Ribosome 0.5002316423461 0.500115630858251 0 0 hm5C_site_57103 DeepMRMD:0;iRNA_m5C:0 57104 chr4 79793787 79793787 1 + C A UCEC 79793783 + 79793763 79793803 41 TTCAGATGCCGCAGTATCAGCAGGCTTTCTTTCAACAGCAG TTCAGATGCCGCAGTATCAGCAGGATTTCTTTCAACAGCAG < 41bp 0.383484133954571 0.778482245238206 0.8260691 0.81349653 prediction 0.556964490476412 Functional Gain - BMP2K ENSG00000138756 CDS Human protein_coding chr4:79793783 chr4:79793787 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_103959 0 0 1 0 1 Cytosol 0.500155601036488 0.500231643902926 0 0.000152085732876506 hm5C_site_57104 DeepMRMD:0;iRNA_m5C:0.000152085732876506 57105 chr10 114925710 114925710 1 + C A THCA 114925706 + 114925686 114925726 41 GACCCAGCCCCAGCCGCTGTCGCTCGTCACCAAGTCTTTAG GACCCAGCCCCAGCCGCTGTCGCTAGTCACCAAGTCTTTAG < 41bp 0.435842677065016 0.778475395743348 0.123894244 0.17409557 prediction 0.556950791486696 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114925706 chr10:114925710 synonymous SNV . 0 25 hm5C_associated_SNPs_103960 0 0 1 0 0 Nucleus 0.500231644812042 0.50026042545914 0 5.75612941964287e-05 hm5C_site_57105 DeepMRMD:0;iRNA_m5C:5.75612941964287e-05 57106 chr9 12821571 12821571 1 + C A UCEC 12821567 + 12821547 12821587 41 TCCTTACGTGGCAGCTACAACAGCCTACACGATGGCAGTGA TCCTTACGTGGCAGCTACAACAGCATACACGATGGCAGTGA < 41bp 0.627736036210529 0.906210829202398 0.554524 0.42933095 prediction 0.556949585983739 Functional Gain - LURAP1L ENSG00000153714 CDS Human protein_coding chr9:12821567 chr9:12821571 nonsynonymous SNV 0.859 3 25 hm5C_associated_SNPs_103961 0 0 0 0 0 nucleus 0.500231643921092 0.500230858150561 0 0 hm5C_site_57106 DeepMRMD:0;iRNA_m5C:0 57107 chr8 11222493 11222493 1 + C A rs183292602 11222489 + 11222469 11222509 41 ACAACGTGGATGCCGTTCGCCAGGCCATAGGTTCGTACCCG ACAACGTGGATGCCGTTCGCCAGGACATAGGTTCGTACCCG < 41bp 0.612569099771994 0.891039055302283 0.7962872 0.7359265 prediction 0.556939911060579 Functional Gain - TDH ENSG00000154316 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:11222489 chr8:11222493 . . 0 25 hm5C_associated_SNPs_103962 0 0 0 0 1 unknown 0.500231643913729 0.500231643921086 0 1.47140077899621e-11 hm5C_site_57107 DeepMRMD:0;iRNA_m5C:1.47140077899621e-11 57108 chr1 200017566 200017566 1 + C G rs201522628 200017565 + 200017545 200017585 41 AGAAGTCCCTTTGTAACATCCCCCATTAGCATGACAATGCC AGAAGTCCCTTTGTAACATCCGCCATTAGCATGACAATGCC < 41bp 0.473986609967873 0.778468572959432 0.004816234 0.12556794 prediction 0.556937145918864 Functional Gain - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200017565 chr1:200017566 nonsynonymous SNV 0.988 2 22 hm5C_associated_SNPs_103963 0 0 0 0 0 cytosol 0.500231643921074 0.500231624010824 0 0 hm5C_site_57108 DeepMRMD:0;iRNA_m5C:0 57109 chrX 102864085 102864085 1 + C A rs141018884 102864081 + 102864061 102864101 41 GCCTGATGATGAAGGAAAGTCAGACGAGGAAGAAAAGCCAG GCCTGATGATGAAGGAAAGTCAGAAGAGGAAGAAAAGCCAG < 41bp 0.627512615597946 0.905971172970611 0.53852767 0.71607625 prediction 0.556917114745329 Functional Gain - TCEAL3 ENSG00000196507 CDS Human protein_coding chrX:102864081 chrX:102864085 nonsynonymous SNV 0.968 0 25 hm5C_associated_SNPs_103964 0 0 0 0 0 exosome 0.500231558697241 0.500231643921093 0.35509716 1.7044770217467e-07 hm5C_site_57109 DeepMRMD:0.35509716;iRNA_m5C:1.7044770217467e-07 57110 chr11 110035954 110035954 1 + T G UCEC 110035951 + 110035931 110035971 41 TCTGCACCTGCCGCACTCCGCTGTGGGCGCCCGGTCCAGCT TCTGCACCTGCCGCACTCCGCTGGGGGCGCCCGGTCCAGCT < 41bp 0.617847351225031 0.896305174277856 0.6391207 0.91063344 prediction 0.55691564610565 Functional Gain - ZC3H12C ENSG00000149289 CDS Human protein_coding chr11:110035951 chr11:110035954 nonsynonymous SNV 0.909 1 24 hm5C_associated_SNPs_103965 0 0 0 0 0 Endoplasmic reticulum 0.500231643921026 0.500231643759517 0.54302548 0 hm5C_site_57110 DeepMRMD:0.54302548;iRNA_m5C:0 57111 chr9 43685064 43685064 1 + C A rs138609333 43685060 + 43685040 43685080 41 GGCGCCGCGCGGCCCCCAGGCTCCCGCGGGGCCGACCTCGG GGCGCCGCGCGGCCCCCAGGCTCCAGCGGGGCCGACCTCGG < 41bp 0.444751542622673 0.778451745898186 0.10764751 0.54462856 prediction 0.556903491796372 Functional Gain - CNTNAP3B ENSG00000154529 UTR5 Human protein_coding chr9:43685060 chr9:43685064 . . 0 25 hm5C_associated_SNPs_103966 0 0 0 0 0 Endoplasmic reticulum 0.500231643082058 0.500231643921112 0.0892571200000001 1.67810854101447e-09 hm5C_site_57111 DeepMRMD:0.0892571200000001;iRNA_m5C:1.67810854101447e-09 57112 chr19 46185005 46185005 1 + C G HNSC 46185004 + 46184984 46185024 41 CAGGTGCAGTCGGAGATCCGCCGTGGCTGGCACCACTGCCG CAGGTGCAGTCGGAGATCCGCGGTGGCTGGCACCACTGCCG < 41bp 0.475356845866229 0.778448059070036 0.74314857 0.8976917 prediction 0.556896118140071 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46185004 chr19:46185005 nonsynonymous SNV 0.929 1 22 hm5C_associated_SNPs_103967 0 0 1 0 1 chromatin 0.500633004234324 0.500231643758775 0.30908626 0 hm5C_site_57112 DeepMRMD:0.30908626;iRNA_m5C:0 57113 chr15 65218320 65218320 1 + C G rs74528237 65218316 + 65218296 65218336 41 AAAAAGGCCATGTGCCTGTGCTGGCGTTCATAATGGAGGAC AAAAAGGCCATGTGCCTGTGCTGGGGTTCATAATGGAGGAC < 41bp 0.495302293409329 0.778435583229876 0.3519029 0.6433914 prediction 0.556871166459753 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65218316 chr15:65218320 nonsynonymous SNV 0.951 1 25 hm5C_associated_SNPs_103968 0 0 0 1 2 nucleoplasm 0.500231746566305 0.500231980456077 0.2867828 4.67779543766866e-07 hm5C_site_57113 DeepMRMD:0.2867828;iRNA_m5C:4.67779543766866e-07 57114 chr2 26798927 26798927 1 + C G rs112873448 26798926 + 26798906 26798946 41 CCCACCATCTTCTCCACCAACCCCAACCTCCTGCTGATGGA CCCACCATCTTCTCCACCAACGCCAACCTCCTGCTGATGGA < 41bp 0.557323175607254 0.835746209648304 0.24619523 0.84831035 prediction 0.5568460680821 Functional Gain - C2orf70 ENSG00000173557 CDS Human protein_coding chr2:26798926 chr2:26798927 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_103969 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0.6966207 1.11022302462516e-15 hm5C_site_57114 DeepMRMD:0.6966207;iRNA_m5C:1.11022302462516e-15 57115 chrX 111697745 111697745 1 + T G LUAD 111697743 + 111697723 111697763 41 TGCAGACCATTGGCCTTTTCCATGAAGAAGAGGCAACATTG TGCAGACCATTGGCCTTTTCCAGGAAGAAGAGGCAACATTG < 41bp 0.51410938016694 0.792525158356698 0.16339001 0.899244 prediction 0.556831556379516 Functional Gain - RTL4 ENSG00000187823 UTR5 Human protein_coding chrX:111697743 chrX:111697745 . . 0 23 hm5C_associated_SNPs_103970 0 0 0 0 1 unknown 0.500231643901928 0.500231644641969 0.798488 1.48008294509339e-09 hm5C_site_57115 DeepMRMD:0.798488;iRNA_m5C:1.48008294509339e-09 57116 chr9 107267011 107267011 1 + C G BLCA 107267010 + 107266990 107267030 41 GATGACAGGCTGTCTCACTGCCATGGTGGAAATGATGTCTG GATGACAGGCTGTCTCACTGCGATGGTGGAAATGATGTCTG < 41bp 0.524939825208602 0.803345880764839 0.3618276 0.43710786 prediction 0.556812111112474 Functional Gain - OR13F1 ENSG00000186881 CDS Human protein_coding chr9:107267010 chr9:107267011 synonymous SNV . 0 22 hm5C_associated_SNPs_103971 0 0 0 0 0 unknown 0.500231094236406 0.500232018356193 0 1.84823957227742e-06 hm5C_site_57116 DeepMRMD:0;iRNA_m5C:1.84823957227742e-06 57117 chr1 17682562 17682562 1 + C G BLCA 17682558 + 17682538 17682578 41 GGCCCCTGTGAAGCTCTATTCTGACTGGCTGTCCGTGGGCC GGCCCCTGTGAAGCTCTATTCTGAGTGGCTGTCCGTGGGCC < 41bp 0.491923940996753 0.778389936862882 0.3522256 0.8475069 prediction 0.556779873725765 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17682558 chr1:17682562 nonsynonymous SNV 0.497 3 25 hm5C_associated_SNPs_103972 0 0 0 0 2 exosome 0.500231643920763 0.500231644302705 0.6950138 7.63883400978216e-10 hm5C_site_57117 DeepMRMD:0.6950138;iRNA_m5C:7.63883400978216e-10 57118 chr16 15110036 15110036 1 + T G STAD 15110033 + 15110013 15110053 41 AGATTGGGAGATTGAAAGAACTCTGTGAGCAGTATGGCATA AGATTGGGAGATTGAAAGAACTCGGTGAGCAGTATGGCATA < 41bp 0.397122150494891 0.77838473939517 0.15434128 0.16155595 prediction 0.556769478790341 Functional Gain - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15110033 chr16:15110036 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_103973 0 0 0 0 2 Cytosol 0.500231643921095 0.500231643927111 0 1.20319310070727e-11 hm5C_site_57118 DeepMRMD:0;iRNA_m5C:1.20319310070727e-11 57119 chr1 246729892 246729892 1 + C A rs193037102 246729888 + 246729868 246729908 41 CAAGCTCCGTGACAGCACGTCGGCCGCCATGTCGCCGAGTG CAAGCTCCGTGACAGCACGTCGGCAGCCATGTCGCCGAGTG < 41bp 0.48381076138092 0.778372015623 0.22516552 0.27715972 prediction 0.556744031246 Functional Gain - CNST ENSG00000162852 UTR5 Human protein_coding chr1:246729888 chr1:246729892 . . 0 25 hm5C_associated_SNPs_103974 0 0 1 0 1 Ribosome 0.500231643939679 0.500231643921102 0 0 hm5C_site_57119 DeepMRMD:0;iRNA_m5C:0 57120 chr19 7711497 7711497 1 + C G rs72994460 7711496 + 7711476 7711516 41 CTCTAGTCTGTTCCCCTGTCCCGCAGGAGTGCCCCTGAGCC CTCTAGTCTGTTCCCCTGTCCGGCAGGAGTGCCCCTGAGCC < 41bp 0.522344550794867 0.800708467104851 0.36042607 0.8214053 prediction 0.556727832619968 Functional Gain - STXBP2 ENSG00000076944 intronic Human protein_coding chr19:7711496 chr19:7711497 . . 0 22 hm5C_associated_SNPs_103975 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.6428106 0 hm5C_site_57120 DeepMRMD:0.6428106;iRNA_m5C:0 57121 chr11 33690957 33690957 1 + C A rs139312911 33690953 + 33690933 33690973 41 GCCTCACGGCACTGAGGCACCAGCCGCTGCCTACCCATCAA GCCTCACGGCACTGAGGCACCAGCAGCTGCCTACCCATCAA < 41bp 0.40780821919256 0.778354272334616 0.048482597 0.19980553 prediction 0.556708544669231 Functional Gain - KIAA1549L ENSG00000255202 ncRNA_intronic Human antisense chr11:33690953 chr11:33690957 . . 0 25 hm5C_associated_SNPs_103976 0 0 0 0 0 exosome 0.500231643557564 0.500231566245187 0 0 hm5C_site_57121 DeepMRMD:0;iRNA_m5C:0 57122 chr17 45913745 45913745 1 + C A LUSC 45913741 + 45913721 45913761 41 CCACTTCTCCTGGACCTGGACGGGCAGCCTGTGGTGGAGCG CCACTTCTCCTGGACCTGGACGGGAAGCCTGTGGTGGAGCG < 41bp 0.631297880537447 0.909647984298749 0.40774086 0.7360307 prediction 0.556700207522605 Functional Gain - LRRC46 ENSG00000141294 CDS Human protein_coding chr17:45913741 chr17:45913745 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_103977 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.4720614 0 hm5C_site_57122 DeepMRMD:0.4720614;iRNA_m5C:0 57123 chr19 54006948 54006948 1 + T G UCEC 54006946 + 54006926 54006966 41 TCCATTGGCAGCACCTGCCTCCTGAGTGTCTCCCAGGCCAT TCCATTGGCAGCACCTGCCTCCGGAGTGTCTCCCAGGCCAT < 41bp 0.575216624913699 0.853565160530177 0.5868142 0.91940945 prediction 0.556697071232957 Functional Gain - ZNF813;ZNF331 ENSG00000198346 CDS Human protein_coding chr19:54006946 chr19:54006948 stoploss . 0 23 hm5C_associated_SNPs_103978 0 0 0 0 0 unknown 0.500233025136968 0.500231646280859 0.6651905 0 hm5C_site_57123 DeepMRMD:0.6651905;iRNA_m5C:0 57124 chr19 1220443 1220443 1 + C G ACC 1220442 + 1220422 1220462 41 TTGTGCACAAGGACATCAAGCCGGGGAACCTGCTGCTCACC TTGTGCACAAGGACATCAAGCGGGGGAACCTGCTGCTCACC < 41bp 0.551788508858248 0.830133080168925 0.9471406 0.95618564 prediction 0.556689142621355 Functional Gain - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220442 chr19:1220443 nonsynonymous SNV 0.860 4 22 hm5C_associated_SNPs_103979 0 0 1 0 2 Ribosome 0.500231643907004 0.500231643913272 0.0180900799999999 1.25368604386722e-11 hm5C_site_57124 DeepMRMD:0.0180900799999999;iRNA_m5C:1.25368604386722e-11 57125 chr12 113346385 113346385 1 + C A SKCM 113346381 + 113346361 113346401 41 CACCACCCTCAGAGGCCGATCTGACGCTGACCTGGTTGTCT CACCACCCTCAGAGGCCGATCTGAAGCTGACCTGGTTGTCT < 41bp 0.366464572059931 0.778337843473516 0.12362379 0.16112146 prediction 0.556675686947032 Functional Gain - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113346381 chr12:113346385 nonsynonymous SNV 0.560 2 25 hm5C_associated_SNPs_103980 0 0 0 0 0 Ribosome 0.500231643921701 0.500231643233048 0 0 hm5C_site_57125 DeepMRMD:0;iRNA_m5C:0 57126 chr17 25628924 25628924 1 + T G SKCM 25628922 + 25628902 25628942 41 TCCAGATGGTTCATACTTTGCTTGGTCACAAGGACATCGCA TCCAGATGGTTCATACTTTGCTGGGTCACAAGGACATCGCA < 41bp 0.569237902438567 0.847561634030896 0.029960304 0.35461664 prediction 0.556647463184659 Functional Gain - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25628922 chr17:25628924 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_103981 0 0 1 0 2 Cytosol 0.500231637533658 0.500231664500262 0 5.39332087878819e-08 hm5C_site_57126 DeepMRMD:0;iRNA_m5C:5.39332087878819e-08 57127 chr16 25078284 25078284 1 + C G rs144241125 25078283 + 25078263 25078303 41 GTGGGAGCAGCGCTCGTCCGCCGTTGGGGCCCCCAGCCCGC GTGGGAGCAGCGCTCGTCCGCGGTTGGGGCCCCCAGCCCGC < 41bp 0.498847372751896 0.778314580435321 0.20213917 0.782236 prediction 0.556629160870643 Functional Gain - LINC02175 ENSG00000262155 ncRNA_exonic Human lincRNA chr16:25078283 chr16:25078284 . . 0 22 hm5C_associated_SNPs_103982 0 0 0 0 0 unknown 0.500231643921148 0.500231643921093 0.564472 0 hm5C_site_57127 DeepMRMD:0.564472;iRNA_m5C:0 57128 chr1 9711820 9711820 1 + C G rs369737325 9711819 + 9711799 9711839 41 AGCGCAGTCGCTCCGAGCGGCCGCGAGCAGAGCCGCCCAGC AGCGCAGTCGCTCCGAGCGGCGGCGAGCAGAGCCGCCCAGC < 41bp 0.518207425050488 0.796516223633064 0.6837038 0.90434283 prediction 0.556617597165151 Functional Gain - PIK3CD ENSG00000171608 UTR5 Human protein_coding chr1:9711819 chr1:9711820 . . 0 22 hm5C_associated_SNPs_103983 0 0 1 0 1 Nucleus 0.500231657791242 0.500231644160697 0.44127806 0 hm5C_site_57128 DeepMRMD:0.44127806;iRNA_m5C:0 57129 chr1 171308678 171308678 1 + C A PAAD 171308674 + 171308654 171308694 41 TTTCTTATAACCGTGCCAATCGAGCTGTTGCAATTCTTTGT TTTCTTATAACCGTGCCAATCGAGATGTTGCAATTCTTTGT < 41bp 0.43102619799394 0.778308695100727 0.82171714 0.8593012 prediction 0.556617390201454 Functional Gain - TOP1P1 ENSG00000076258 intronic Human protein_coding chr1:171308674 chr1:171308678 . . 0 25 hm5C_associated_SNPs_103984 0 0 0 2 0 unknown 0.500231644853798 0.500231643962013 0.0751681200000001 0 hm5C_site_57129 DeepMRMD:0.0751681200000001;iRNA_m5C:0 57130 chrX 70444261 70444261 1 + T G rs104894825 70444259 + 70444239 70444279 41 CCTTCCCGCAAGGGCTCGGGCTTCGGCCACCGCCTCTCACC CCTTCCCGCAAGGGCTCGGGCTGCGGCCACCGCCTCTCACC < 41bp 0.596042862468637 0.874345445283903 0.14182931 0.21874544 prediction 0.556605165630532 Functional Gain - GJB1 ENSG00000169562 CDS Human protein_coding chrX:70444259 chrX:70444261 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_103985 4 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0.500231643921007 0 0 hm5C_site_57130 DeepMRMD:0;iRNA_m5C:0 X-linked hereditary motor and sensory neuropathy X-linked hereditary motor and sensory neuropathy 57131 chr7 155251243 155251243 1 + C G rs199573836 155251242 + 155251222 155251262 41 GCCCGCGGTCCTGCAGGCGCCCGGCAACCACCAGCACCCGC GCCCGCGGTCCTGCAGGCGCCGGGCAACCACCAGCACCCGC < 41bp 0.556274617783604 0.834550957246342 0.28376508 0.6852503 prediction 0.556552678925475 Functional Gain - EN2 ENSG00000164778 CDS Human protein_coding chr7:155251242 chr7:155251243 synonymous SNV . 0 22 hm5C_associated_SNPs_103986 0 0 1 0 0 Cytosol 0.500231937880307 0.500231644040195 0.3705006 0 hm5C_site_57131 DeepMRMD:0.3705006;iRNA_m5C:0 57132 chr11 124750430 124750430 1 + C A UCEC 124750426 + 124750406 124750446 41 GGCTCCAGCAGCTCTAGGGGCTCCCGGGGCCCTGGCCGGAG GGCTCCAGCAGCTCTAGGGGCTCCAGGGGCCCTGGCCGGAG < 41bp 0.35601738712915 0.778271953150074 0.38433832 0.892623 prediction 0.556543906300148 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124750426 chr11:124750430 synonymous SNV . 0 25 hm5C_associated_SNPs_103987 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.785246 0 hm5C_site_57132 DeepMRMD:0.785246;iRNA_m5C:0 57133 chr17 3558559 3558559 1 + T G UCEC 3558557 + 3558537 3558577 41 ATCCGCAGCAGCGCCATTAGCATCATAAACCAGGTGATTGG ATCCGCAGCAGCGCCATTAGCAGCATAAACCAGGTGATTGG < 41bp 0.593161252349369 0.871431474238994 0.0781306 0.5353913 prediction 0.55654044377925 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3558557 chr17:3558559 nonsynonymous SNV 0.772 2 23 hm5C_associated_SNPs_103988 0 0 1 0 2 Endoplasmic reticulum 0.500231643921169 0.500231643921069 0.0707826 0 hm5C_site_57133 DeepMRMD:0.0707826;iRNA_m5C:0 57134 chr7 154862919 154862919 1 + G T BRCA 154862923 - 154862903 154862943 41 TCCGACCTAGCTGCCAGCGGCGCCCGGACAGCTCGTGCACC TCCGACCTAGCTGCCAGCGGCGCCAGGACAGCTCGTGCACC < 41bp 0.628237650320499 0.90648888423311 0.4228268 0.83985907 prediction 0.556502467825223 Functional Gain - HTR5A ENSG00000157219;ENSG00000220575 CDS Human other chr7:154862923 chr7:154862919 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_103989 0 0 0 0 0 exosome 0.500231643921092 0.500231643921114 0.67971814 4.2632564145606e-14 hm5C_site_57134 DeepMRMD:0.67971814;iRNA_m5C:4.2632564145606e-14 57135 chr15 40661535 40661535 1 + C A OV 40661531 + 40661511 40661551 41 GGCTGCAGCCCTGTTTGCGGCAGGCGTGCTCATGCTGCCTG GGCTGCAGCCCTGTTTGCGGCAGGAGTGCTCATGCTGCCTG < 41bp 0.614322710339683 0.892560899908581 0.9206692 0.92525935 prediction 0.556476379137796 Functional Gain - DISP2 ENSG00000140323 CDS Human protein_coding chr15:40661531 chr15:40661535 synonymous SNV . 0 25 hm5C_associated_SNPs_103990 0 0 0 0 0 nucleus 0.500231643931743 0.500231643921146 0.00918030000000014 0 hm5C_site_57135 DeepMRMD:0.00918030000000014;iRNA_m5C:0 57136 chr9 99252342 99252342 1 + C G rs12347119 99252341 + 99252321 99252361 41 AAGAGCCCTGTTTCCCAGCACCGCGGAGCTGCACTGCACAC AAGAGCCCTGTTTCCCAGCACGGCGGAGCTGCACTGCACAC < 41bp 0.54697435574119 0.825211762358307 0.38425854 0.7793336 prediction 0.556474813234235 Functional Gain - HABP4 ENSG00000130956 UTR3 Human protein_coding chr9:99252341 chr9:99252342 . . 0 22 hm5C_associated_SNPs_103991 0 0 1 0 1 chromatin 0.500586158106152 0.500233338336544 0.5586672 0 hm5C_site_57136 DeepMRMD:0.5586672;iRNA_m5C:0 57137 chr5 192439 192439 1 + C A rs369014987 192435 + 192415 192455 41 CCCCACCTACGCCTCCACTCCCGACGGCGAGGACCCCCTCC CCCCACCTACGCCTCCACTCCCGAAGGCGAGGACCCCCTCC < 41bp 0.395234205181231 0.778232397851755 0.94023144 0.9432085 prediction 0.556464795703511 Functional Gain - LRRC14B ENSG00000185028 CDS Human protein_coding chr5:192435 chr5:192439 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103992 0 0 0 0 0 exosome 0.500231658617078 0.500231643921023 0.00595411999999995 0 hm5C_site_57137 DeepMRMD:0.00595411999999995;iRNA_m5C:0 57138 chr6 26598831 26598831 1 + C A THCA 26598827 + 26598807 26598847 41 CAGGATCTTTGGAGCCCCGCCACCCTCAGAGAGCATGGAGG CAGGATCTTTGGAGCCCCGCCACCATCAGAGAGCATGGAGG < 41bp 0.378032902678027 0.778228305981202 0.16396648 0.1803484 prediction 0.556456611962403 Functional Gain - ABT1 ENSG00000146109 CDS Human protein_coding chr6:26598827 chr6:26598831 synonymous SNV . 0 25 hm5C_associated_SNPs_103993 0 0 1 0 0 Ribosome 0.500231643920755 0.500231643998512 0 1.55514712218974e-10 hm5C_site_57138 DeepMRMD:0;iRNA_m5C:1.55514712218974e-10 57139 chr7 150773473 150773473 1 + C G rs569148643 150773469 + 150773449 150773489 41 GTGTAGCCGCCACCGAGGGACAGCCGAGGGACCGATGGACG GTGTAGCCGCCACCGAGGGACAGCGGAGGGACCGATGGACG < 41bp 0.498243620896697 0.778226230678828 0.26975268 0.5062968 prediction 0.556452461357656 Functional Gain - SLC4A2 ENSG00000244151 ncRNA_exonic Human antisense chr7:150773469 chr7:150773473 . . 0 25 hm5C_associated_SNPs_103994 0 0 1 0 1 Ribosome 0.500236570622883 0.500231675478502 0.0125936 0 hm5C_site_57139 DeepMRMD:0.0125936;iRNA_m5C:0 57140 chr9 101597549 101597549 1 + T A rs201140510 101597545 + 101597525 101597565 41 TTTTAGGTCTCCAACAATGGCTGGTGGGCTGTTTGCTGTGA TTTTAGGTCTCCAACAATGGCTGGAGGGCTGTTTGCTGTGA < 41bp 0.566900218031705 0.84512617284102 0.047884613 0.14220113 prediction 0.556451909618631 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101597545 chr9:101597549 synonymous SNV . 0 25 hm5C_associated_SNPs_103995 0 0 1 0 1 Ribosome 0.500231643916328 0.500231643920799 0 8.94195828493594e-12 hm5C_site_57140 DeepMRMD:0;iRNA_m5C:8.94195828493594e-12 57141 chr7 89790581 89790581 1 + C G CESC 89790580 + 89790560 89790600 41 GCAATTTATAGTCTGTCTTACCCAATGAGGCGATCCTACAG GCAATTTATAGTCTGTCTTACGCAATGAGGCGATCCTACAG < 41bp 0.52722195631879 0.805445352810074 0.39462015 0.1766819 prediction 0.556446792982568 Functional Gain - STEAP1 ENSG00000164647 CDS Human protein_coding chr7:89790580 chr7:89790581 nonsynonymous SNV 0.764 3 22 hm5C_associated_SNPs_103996 0 0 0 0 1 Endoplasmic reticulum 0.500231645065207 0.500232457515965 0 1.62490151600636e-06 hm5C_site_57141 DeepMRMD:0;iRNA_m5C:1.62490151600636e-06 57142 chr8 48882479 48882479 1 + T C UCEC 48882477 + 48882457 48882497 41 ATGCAAAACGTCTGCATGGCCTTGATGAAGAAGCAGAACAG ATGCAAAACGTCTGCATGGCCTCGATGAAGAAGCAGAACAG < 41bp 0.531397695442071 0.809579511994182 0.047439873 0.36122313 prediction 0.556363633104222 Functional Gain - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48882477 chr8:48882479 synonymous SNV . 0 23 hm5C_associated_SNPs_103997 0 0 1 0 0 Cytosol 0.500262262952773 0.500241141981853 0 0 hm5C_site_57142 DeepMRMD:0;iRNA_m5C:0 57143 chr15 45694565 45694565 1 + C G rs562677253 45694564 + 45694544 45694584 41 CGGCCTGCGAGCTCGGTGTTCCGCTTTTTGTGGGCCGGGTG CGGCCTGCGAGCTCGGTGTTCGGCTTTTTGTGGGCCGGGTG < 41bp 0.529032887649824 0.807195340140529 0.3267424 0.6757977 prediction 0.556324904981409 Functional Gain - SPATA5L1 ENSG00000171763 UTR5 Human protein_coding chr15:45694564 chr15:45694565 . . 0 22 hm5C_associated_SNPs_103998 0 0 1 0 0 chromatin 0.500231643921155 0.500231643921092 0.3515954 0 hm5C_site_57143 DeepMRMD:0.3515954;iRNA_m5C:0 57144 chr10 124096076 124096076 1 + C G rs143717019 124096072 + 124096052 124096092 41 AGCACAACCACGTCAGCCTGCGAGCGGCACGCCTGGTGAAG AGCACAACCACGTCAGCCTGCGAGGGGCACGCCTGGTGAAG < 41bp 0.516485711534557 0.794645309429125 0.6263283 0.89482796 prediction 0.556319195789136 Functional Gain - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124096072 chr10:124096076 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_103999 0 0 0 0 1 cytosol 0.500231466033626 0.500231643447697 0.53699932 3.54828142201669e-07 hm5C_site_57144 DeepMRMD:0.53699932;iRNA_m5C:3.54828142201669e-07 57145 chr11 63994300 63994300 1 + C G STAD 63994299 + 63994279 63994319 41 AACCCTGGCTCTTCGACGCCCCCAAGTTCCGCCTGCACTCA AACCCTGGCTCTTCGACGCCCGCAAGTTCCGCCTGCACTCA < 41bp 0.550503004863529 0.828657743350233 0.03451982 0.16716579 prediction 0.556309476973408 Functional Gain - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63994299 chr11:63994300 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_104000 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921093 0 0 hm5C_site_57145 DeepMRMD:0;iRNA_m5C:0 57146 chr19 17641670 17641670 1 + C A STAD 17641666 + 17641646 17641686 41 AGAGCTGGGCCCTCAGGAGCCGACCGGAAGCCAGTTGCTAC AGAGCTGGGCCCTCAGGAGCCGACAGGAAGCCAGTTGCTAC < 41bp 0.400563855473854 0.778151049760444 0.24854025 0.1666973 prediction 0.556302099520887 Functional Gain - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17641666 chr19:17641670 synonymous SNV . 0 25 hm5C_associated_SNPs_104001 0 0 0 0 1 exosome 0.500231643914946 0.500231643903525 0 0 hm5C_site_57146 DeepMRMD:0;iRNA_m5C:0 57147 chr5 640669 640669 1 + C G rs138955347 640668 + 640648 640688 41 GAGCAGCAGCAGCAGCACGCCCGGGAGATGAGCGAGGTGAC GAGCAGCAGCAGCAGCACGCCGGGGAGATGAGCGAGGTGAC < 41bp 0.524627962922791 0.80276733909735 0.40422603 0.8915684 prediction 0.556278752349117 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:640668 chr5:640669 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_104002 0 0 1 0 1 chromatin 0.500195270847014 0.500231619707261 0.7831368 7.26977204936752e-05 hm5C_site_57147 DeepMRMD:0.7831368;iRNA_m5C:7.26977204936752e-05 57148 chr1 2938924 2938924 1 + T G rs72629486 2938922 + 2938902 2938942 41 AAGAAGCTGTGCTACGTGGCCTTGGAGCCCGAGAAGGAGCT AAGAAGCTGTGCTACGTGGCCTGGGAGCCCGAGAAGGAGCT < 41bp 0.444107878312211 0.778132728070108 0.028092772 0.22979692 prediction 0.556265456140216 Functional Gain - ACTRT2 ENSG00000169717 CDS Human protein_coding chr1:2938922 chr1:2938924 nonsynonymous SNV 0.832 4 23 hm5C_associated_SNPs_104003 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_57148 DeepMRMD:0;iRNA_m5C:0 57149 chr2 25377656 25377656 1 + C G rs571291364 25377655 + 25377635 25377675 41 GATGGGGATGGCTCTCTCCTCCCCAGCACTCCCCCTGCTCC GATGGGGATGGCTCTCTCCTCGCCAGCACTCCCCCTGCTCC < 41bp 0.531252208295232 0.809369556243485 0.21025246 0.12667778 prediction 0.556234695896507 Functional Gain - EFR3B ENSG00000084710 UTR3 Human protein_coding chr2:25377655 chr2:25377656 . . 0 22 hm5C_associated_SNPs_104004 0 0 0 0 0 Nucleus 0.500231644241416 0.500231653870926 0 1.92590208225596e-08 hm5C_site_57149 DeepMRMD:0;iRNA_m5C:1.92590208225596e-08 57150 chr11 62010815 62010815 1 + T G UCEC 62010813 + 62010793 62010833 41 GAGCTGTTAGACTTCTTCTTCATTAGTGAACCTCTGTTCAA GAGCTGTTAGACTTCTTCTTCAGTAGTGAACCTCTGTTCAA < 41bp 0.453273815829044 0.778115047688352 0.18771785 0.37079144 prediction 0.556230095376704 Functional Gain - SCGB1D2 ENSG00000124935 CDS Human protein_coding chr11:62010813 chr11:62010815 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_104005 0 0 0 0 1 unknown 0.500231663341045 0.500231406006673 0 0 hm5C_site_57150 DeepMRMD:0;iRNA_m5C:0 57151 chr11 63671476 63671476 1 + C G KIRP 63671475 + 63671455 63671495 41 TAGCCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTG TAGCCTAACCATGCCAGGGTCGCGGGCCTCCACGGCTTCTG < 41bp 0.468346142939993 0.778110721240551 0.4825989 0.89240444 prediction 0.556221442481102 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63671475 chr11:63671476 synonymous SNV . 0 22 hm5C_associated_SNPs_104006 0 0 1 0 1 Nucleus 0.500231644001515 0.500231643921775 0.78480888 0 hm5C_site_57151 DeepMRMD:0.78480888;iRNA_m5C:0 57152 chr1 248224543 248224543 1 + C A LUSC 248224539 + 248224519 248224559 41 ATGTCCCAGCAATGGTGACTCTGGCCTGCATGGACACCTGG ATGTCCCAGCAATGGTGACTCTGGACTGCATGGACACCTGG < 41bp 0.612577976035905 0.890687678622059 0.14376098 0.1979211 prediction 0.556219405172308 Functional Gain - OR2L3 ENSG00000198128 CDS Human protein_coding chr1:248224539 chr1:248224543 nonsynonymous SNV 0.040 3 25 hm5C_associated_SNPs_104007 0 0 0 0 0 unknown 0.500231643918274 0.500231643870305 0 0 hm5C_site_57152 DeepMRMD:0;iRNA_m5C:0 57153 chr1 1244599 1244599 1 + C G rs557118889 1244598 + 1244578 1244618 41 GCTCAGGCCGGCCGCCCTTCCCGCCCGAGGTCCTGGCCGAG GCTCAGGCCGGCCGCCCTTCCGGCCCGAGGTCCTGGCCGAG < 41bp 0.503479635092485 0.781588410573438 0.16265848 0.34504056 prediction 0.556217550961908 Functional Gain - PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1244598 chr1:1244599 nonsynonymous SNV 0.010 0 22 hm5C_associated_SNPs_104008 0 0 1 0 1 Ribosome 0.500231643921716 0.500231643921094 0 0 hm5C_site_57153 DeepMRMD:0;iRNA_m5C:0 57154 chr9 82323674 82323674 1 + T A UCEC 82323670 + 82323650 82323690 41 CGCAGCTGCTGCCGCCGCCGCTGCTGCTGCTGCCTATGGGA CGCAGCTGCTGCCGCCGCCGCTGCAGCTGCTGCCTATGGGA < 41bp 0.441790470910655 0.778098090502384 0.24376553 0.27519047 prediction 0.556196181004769 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323670 chr9:82323674 synonymous SNV . 0 25 hm5C_associated_SNPs_104009 0 0 0 0 1 Endoplasmic reticulum 0.500231644501885 0.500231643695786 0 0 hm5C_site_57154 DeepMRMD:0;iRNA_m5C:0 57155 chr9 110081111 110081111 1 + T C UCEC 110081109 + 110081089 110081129 41 CGAGAGCAAGTAATTGCAGCCCTGAGAGCCAGTTTCAACAA CGAGAGCAAGTAATTGCAGCCCCGAGAGCCAGTTTCAACAA < 41bp 0.49701786217255 0.778091644306293 0.02123189 0.08199391 prediction 0.556183288612586 Functional Gain - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110081109 chr9:110081111 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_104010 0 0 1 0 2 Ribosome 0.500140013976424 0.500231681456563 0 0.000183334960277781 hm5C_site_57155 DeepMRMD:0;iRNA_m5C:0.000183334960277781 57156 chr2 24236244 24236244 1 + C A UCEC 24236240 + 24236220 24236260 41 CCAGATAGCCTCCAGCGCCACAGCCTTTTACCTGCAGCTTT CCAGATAGCCTCCAGCGCCACAGCATTTTACCTGCAGCTTT < 41bp 0.371322196129653 0.778085113437463 0.14569336 0.24302089 prediction 0.556170226874926 Functional Gain - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24236240 chr2:24236244 synonymous SNV . 0 25 hm5C_associated_SNPs_104011 0 0 0 4 2 Endoplasmic reticulum 0.500231643918927 0.500231641064418 0 0 hm5C_site_57156 DeepMRMD:0;iRNA_m5C:0 57157 chr15 34355426 34355426 1 + C A LUAD 34355422 + 34355402 34355442 41 TGGGCCCCAGCAATCCTCTGCTGGCAGTACTTGGTTGGGAA TGGGCCCCAGCAATCCTCTGCTGGAAGTACTTGGTTGGGAA < 41bp 0.370521821627361 0.778084726397113 0.35318297 0.31539255 prediction 0.556169452794226 Functional Gain - CHRM5 ENSG00000184984 CDS Human protein_coding chr15:34355422 chr15:34355426 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104012 0 0 0 0 0 cytosol 0.500231644846892 0.500231643914168 0 0 hm5C_site_57157 DeepMRMD:0;iRNA_m5C:0 57158 chr8 120885921 120885921 1 + C A rs182616760 120885917 + 120885897 120885937 41 GTTTCTGGGGCCGGACTAGCCCAGCGCGTCTGCCTACCCAT GTTTCTGGGGCCGGACTAGCCCAGAGCGTCTGCCTACCCAT < 41bp 0.583687727797407 0.861771943956068 0.15940413 0.2922719 prediction 0.556168432317323 Functional Gain - DEPTOR ENSG00000245330 ncRNA_exonic Human lincRNA chr8:120885917 chr8:120885921 . . 0 25 hm5C_associated_SNPs_104013 0 0 0 0 0 exosome 0.500231643853861 0.500231643921092 0 1.34462441181427e-10 hm5C_site_57158 DeepMRMD:0;iRNA_m5C:1.34462441181427e-10 57159 chrX 103294730 103294730 1 + T A UCEC 103294726 + 103294706 103294746 41 AGCTTCGGGGACAGCTTCACCCCCTATTTCCCCCGGGTGCT AGCTTCGGGGACAGCTTCACCCCCAATTTCCCCCGGGTGCT < 41bp 0.451824574115028 0.778063142377373 0.0839248 0.16952336 prediction 0.556126284754746 Functional Gain - H2BFM ENSG00000101812 CDS Human protein_coding chrX:103294726 chrX:103294730 nonsynonymous SNV 0.008 3 25 hm5C_associated_SNPs_104014 0 0 0 0 0 unknown 0.500231643921093 0.500231643921093 0 0 hm5C_site_57159 DeepMRMD:0;iRNA_m5C:0 57160 chr1 243480092 243480092 1 + T G LGG 243480089 + 243480069 243480109 41 CTTGATGTCTGCACTAGTTTCCGTAAGGAGCAGCTTGGCAG CTTGATGTCTGCACTAGTTTCCGGAAGGAGCAGCTTGGCAG < 41bp 0.408325714119124 0.778035158820472 0.42273957 0.89764154 prediction 0.556070317640943 Functional Gain - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243480089 chr1:243480092 nonsynonymous SNV 0.364 2 24 hm5C_associated_SNPs_104015 0 0 1 0 1 chromatin 0.500231794743621 0.500284187674723 0.79528308 0.00010478586220386 hm5C_site_57160 DeepMRMD:0.79528308;iRNA_m5C:0.00010478586220386 Height 57161 chr6 26205024 26205024 1 + T A STAD 26205020 + 26205000 26205040 41 GTGTCAAGCGCATTTCTGGTCTCATCTACGAGGAGACTCGC GTGTCAAGCGCATTTCTGGTCTCAACTACGAGGAGACTCGC < 41bp 0.557485585563432 0.835519917975551 0.31786215 0.30673325 prediction 0.556068664824238 Functional Gain - HIST1H4E ENSG00000198518 CDS Human other chr6:26205020 chr6:26205024 nonsynonymous SNV 0.021 0 25 hm5C_associated_SNPs_104016 0 0 1 0 0 Nucleus 0.500231640413993 0.500231672456763 0 6.40855402078699e-08 hm5C_site_57161 DeepMRMD:0;iRNA_m5C:6.40855402078699e-08 57162 chr18 74208371 74208371 1 + T G rs561387578 74208368 + 74208348 74208388 41 TTACCTCAGCGGCGGCGTCTCTCTCTGCGCCTCACACTCGC TTACCTCAGCGGCGGCGTCTCTCGCTGCGCCTCACACTCGC < 41bp 0.623832685043047 0.901861229352206 0.02966401 0.07045531 prediction 0.556057088618317 Functional Gain - C18orf65 ENSG00000220032 CDS Human other chr18:74208368 chr18:74208371 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_104017 0 0 0 0 0 unknown 0.500231644371198 0.500231646976008 0 5.20961962457989e-09 hm5C_site_57162 DeepMRMD:0;iRNA_m5C:5.20961962457989e-09 57163 chr7 150105512 150105512 1 + C A rs546463327 150105508 + 150105488 150105528 41 CCTCCCTCGGGACCCTCTGGCTGGCTGCGCACAGCTGCTTC CCTCCCTCGGGACCCTCTGGCTGGATGCGCACAGCTGCTTC < 41bp 0.59474554664083 0.872769967280291 0.16261947 0.5289879 prediction 0.556048841278922 Functional Gain - LOC728743 ENSG00000196456;ENSG00000242258 intergenic Human other chr7:150105508 chr7:150105512 . . 0 25 hm5C_associated_SNPs_104018 0 0 0 0 1 unknown 0.500231645377233 0.500231643814817 0.0579757999999999 0 hm5C_site_57163 DeepMRMD:0.0579757999999999;iRNA_m5C:0 57164 chr19 13930269 13930269 1 + C G LUSC 13930268 + 13930248 13930288 41 ACCGCACTGCTGCCTCATGACCCGGACCTGGCCTATCGCCT ACCGCACTGCTGCCTCATGACGCGGACCTGGCCTATCGCCT < 41bp 0.466153970430955 0.778010594574357 0.18192944 0.65631485 prediction 0.556021189148715 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13930268 chr19:13930269 nonsynonymous SNV 0.958 0 22 hm5C_associated_SNPs_104019 0 0 0 0 2 chromatin 0.500231643920946 0.500231640019277 0.3126297 0 hm5C_site_57164 DeepMRMD:0.3126297;iRNA_m5C:0 57165 chr1 17706441 17706441 1 + C G SKCM 17706440 + 17706420 17706460 41 TCTCTAGAGGTAGACATCTACCGCAATGGGCAAGTTGAGAT TCTCTAGAGGTAGACATCTACGGCAATGGGCAAGTTGAGAT < 41bp 0.519127226650633 0.797110979958034 0.41967237 0.86834514 prediction 0.555967506614801 Functional Gain - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17706440 chr1:17706441 . 0.388 2 22 hm5C_associated_SNPs_104020 0 0 0 0 2 exosome 0.50023164389651 0.500231643921092 0.73669028 4.91646723332906e-11 hm5C_site_57165 DeepMRMD:0.73669028;iRNA_m5C:4.91646723332906e-11 57166 chr12 120427963 120427963 1 + C G rs540732478 120427962 + 120427942 120427982 41 GCCGCCGCCCTCCCAGGACCCCGAGCTGCTGTCGGTGATCC GCCGCCGCCCTCCCAGGACCCGGAGCTGCTGTCGGTGATCC < 41bp 0.54627016147277 0.824253745031979 0.10407022 0.8594094 prediction 0.555967167118418 Functional Gain - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120427962 chr12:120427963 synonymous SNV . 0 22 hm5C_associated_SNPs_104021 0 0 0 0 0 chromatin 0.500231643921108 0.500231643921446 0.7188188 6.7612582199672e-13 hm5C_site_57166 DeepMRMD:0.7188188;iRNA_m5C:6.7612582199672e-13 57167 chr1 161138933 161138933 1 + C G rs12735723 161138929 + 161138909 161138949 41 GGGTCAGTGTTCTCAGAGGCCAGCCGGTCTGTGGGCTCAGC GGGTCAGTGTTCTCAGAGGCCAGCGGGTCTGTGGGCTCAGC < 41bp 0.50890924871806 0.786887482871308 0.26623887 0.5124419 prediction 0.555956468306497 Functional Gain - PPOX ENSG00000143224 CDS Human protein_coding chr1:161138929 chr1:161138933 nonsynonymous SNV 0.767 3 25 hm5C_associated_SNPs_104022 1 0 1 0 1 Cytosol 0.500231643429523 0.500231692390579 0.0248838 9.79221126407026e-08 hm5C_site_57167 DeepMRMD:0.0248838;iRNA_m5C:9.79221126407026e-08 Variegate porphyria, homozygous Variegate porphyria, homozygous 57168 chr14 58831291 58831291 1 + T C SARC 58831289 + 58831269 58831309 41 CTCATATAGAAGCTCATAGTCTTGAATTGTCTTCATTAGAC CTCATATAGAAGCTCATAGTCTCGAATTGTCTTCATTAGAC < 41bp 0.491230542855311 0.777967570160916 0.11133677 0.53934586 prediction 0.555935140321833 Functional Gain - ARID4A ENSG00000032219 CDS Human protein_coding chr14:58831289 chr14:58831291 synonymous SNV . 0 23 hm5C_associated_SNPs_104023 0 0 1 0 0 chromatin 0.500231644220614 0.500233469097742 0.0786917199999999 3.64975425481973e-06 hm5C_site_57168 DeepMRMD:0.0786917199999999;iRNA_m5C:3.64975425481973e-06 57169 chr17 9480081 9480081 1 + T G LUSC 9480078 + 9480058 9480098 41 CTTGACGCCGTGATCGGCTTCAATGGTGAGGCCTCCAGCAT CTTGACGCCGTGATCGGCTTCAAGGGTGAGGCCTCCAGCAT < 41bp 0.57899091528567 0.856957833098372 0.10578978 0.8839324 prediction 0.555933835625406 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9480078 chr17:9480081 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_104024 0 0 0 0 1 nucleus 0.50023164393485 0.500231652379005 0.7678648 1.68883087514615e-08 hm5C_site_57169 DeepMRMD:0.7678648;iRNA_m5C:1.68883087514615e-08 57170 chr12 66696538 66696538 1 + T G STAD 66696536 + 66696516 66696556 41 GAGGAGCTCTGCAGTGGGGGCGTAAAGGCTGGCAGCCTCCC GAGGAGCTCTGCAGTGGGGGCGGAAAGGCTGGCAGCCTCCC < 41bp 0.588723156302368 0.866682710005345 0.8379899 0.8999784 prediction 0.555919107405955 Functional Gain - HELB ENSG00000127311 CDS Human protein_coding chr12:66696536 chr12:66696538 nonsynonymous SNV 0.006 0 23 hm5C_associated_SNPs_104025 0 0 1 0 1 nucleus 0.500231643921092 0.500231643921092 0.123977 0 hm5C_site_57170 DeepMRMD:0.123977;iRNA_m5C:0 57171 chr17 76235908 76235908 1 + C G BRCA 76235907 + 76235887 76235927 41 AGAGGGACCCACCCAGATCGCCTGGCGCCAGAGAGATGCCG AGAGGGACCCACCCAGATCGCGTGGCGCCAGAGAGATGCCG < 41bp 0.533874992997793 0.811833315466679 0.54982 0.87366503 prediction 0.555916644937773 Functional Gain - TMEM235 ENSG00000204278 CDS Human protein_coding chr17:76235907 chr17:76235908 synonymous SNV . 0 22 hm5C_associated_SNPs_104026 0 0 0 0 1 exosome 0.500231643921001 0.500231643921091 0.64769006 1.80966353013901e-13 hm5C_site_57171 DeepMRMD:0.64769006;iRNA_m5C:1.80966353013901e-13 57172 chr4 151153909 151153909 1 + T A LUSC 151153905 + 151153885 151153925 41 GATGGCAGTGCCATGGTGTACAACTTAGCCAATGCCCTCAG GATGGCAGTGCCATGGTGTACAACATAGCCAATGCCCTCAG < 41bp 0.455928833246755 0.777946919766977 0.14583483 0.25687003 prediction 0.555893839533954 Functional Gain - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151153905 chr4:151153909 nonsynonymous SNV 0.957 4 25 hm5C_associated_SNPs_104027 0 0 1 1 1 Nucleus 0.500231643920831 0.500231643919195 0 0 hm5C_site_57172 DeepMRMD:0;iRNA_m5C:0 57173 chr19 15905661 15905661 1 + C A rs67455341 15905657 + 15905637 15905677 41 ACCTGAAGCCCAAAGGTCCCCAGTCTCCGGAAGGAGACACC ACCTGAAGCCCAAAGGTCCCCAGTATCCGGAAGGAGACACC < 41bp 0.40208439254075 0.777944036010117 0.095465064 0.057839274 prediction 0.555888072020234 Functional Gain - OR10H5 ENSG00000172519 CDS Human protein_coding chr19:15905657 chr19:15905661 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_104028 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_57173 DeepMRMD:0;iRNA_m5C:0 57174 chr22 25016930 25016930 1 + C A HNSC 25016926 + 25016906 25016946 41 TGCTTCGGGAGGGGGAGAGACTGACCCTGCCGCAGCTGGCT TGCTTCGGGAGGGGGAGAGACTGAACCTGCCGCAGCTGGCT < 41bp 0.363368724385701 0.777940204508445 0.42059845 0.7922021 prediction 0.555880409016891 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25016926 chr22:25016930 nonsynonymous SNV 0.106 0 25 hm5C_associated_SNPs_104029 0 0 1 0 1 exosome 0.500231643861073 0.500231643921092 0.5844042 1.20038423645497e-10 hm5C_site_57174 DeepMRMD:0.5844042;iRNA_m5C:1.20038423645497e-10 57175 chr11 3846320 3846320 1 + C A UCEC 3846316 + 3846296 3846336 41 TCATCTCCTTCTTCTCGGCGCTGGCTGTCTACTTTCGGCAC TCATCTCCTTCTTCTCGGCGCTGGATGTCTACTTTCGGCAC < 41bp 0.411066250886328 0.777933785196004 0.02125755 0.04070744 prediction 0.555867570392009 Functional Gain - PGAP2 ENSG00000148985 CDS Human protein_coding chr11:3846316 chr11:3846320 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104030 0 0 1 1 2 Ribosome 0.500231655679935 0.500231643986769 0 0 hm5C_site_57175 DeepMRMD:0;iRNA_m5C:0 57176 chr19 58101420 58101420 1 + C G SKCM 58101419 + 58101399 58101439 41 GATGAAGAGACACCTTCTGACCAGAATGTTTCTGTAGGAGT GATGAAGAGACACCTTCTGACGAGAATGTTTCTGTAGGAGT < 41bp 0.534749346247046 0.812679901463728 0.021070272 0.2814605 prediction 0.555861110433365 Functional Gain - ZIK1 ENSG00000171649 CDS Human protein_coding chr19:58101419 chr19:58101420 nonsynonymous SNV 0.390 0 22 hm5C_associated_SNPs_104031 0 0 1 0 1 exosome 0.500231643921085 0.500231643921084 0 0 hm5C_site_57176 DeepMRMD:0;iRNA_m5C:0 57177 chr19 50549819 50549819 1 + T A LUSC 50549815 + 50549795 50549835 41 AAGAAGCCGTTGGTGTGTAACGAATGCGGGAAAACGTTCCG AAGAAGCCGTTGGTGTGTAACGAAAGCGGGAAAACGTTCCG < 41bp 0.483544896177964 0.777926630631541 0.3849053 0.681537 prediction 0.555853261263081 Functional Gain - ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50549815 chr19:50549819 nonsynonymous SNV 0.583 2 25 hm5C_associated_SNPs_104032 0 0 1 0 0 Cytosol 0.500231645654902 0.500231654386575 0.363074 1.74633461025309e-08 hm5C_site_57177 DeepMRMD:0.363074;iRNA_m5C:1.74633461025309e-08 57178 chr2 70131394 70131394 1 + T G UCEC 70131392 + 70131372 70131412 41 TCTTCTCATCATAGGCAGTACATGAATCGAAAAGGTGGATT TCTTCTCATCATAGGCAGTACAGGAATCGAAAAGGTGGATT < 41bp 0.524622070715335 0.802545015307662 0.23067045 0.191481 prediction 0.555845889184654 Functional Gain - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70131392 chr2:70131394 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_104033 0 0 1 0 1 Ribosome 0.500231644536093 0.500231643927139 0 0 hm5C_site_57178 DeepMRMD:0;iRNA_m5C:0 57179 chr16 1412532 1412532 1 + C A LUSC 1412528 + 1412508 1412548 41 CCTGGCCGATGAGCTGATCACCCCCCAGGTAAGCGTGCGCT CCTGGCCGATGAGCTGATCACCCCACAGGTAAGCGTGCGCT < 41bp 0.362153642943826 0.777910425902527 0.34962878 0.4102488 prediction 0.555820851805054 Functional Gain - GNPTG ENSG00000090581 CDS Human protein_coding chr16:1412528 chr16:1412532 synonymous SNV . 0 25 hm5C_associated_SNPs_104034 0 0 0 0 1 Ribosome 0.500231644462416 0.500231715117217 0 1.41309601131567e-07 hm5C_site_57179 DeepMRMD:0;iRNA_m5C:1.41309601131567e-07 57180 chrX 135638632 135638632 1 + T A OV 135638628 + 135638608 135638648 41 AGCTCTTTCAGAGTTAGAGACACCTGGGAAATACTCACTTA AGCTCTTTCAGAGTTAGAGACACCAGGGAAATACTCACTTA < 41bp 0.542401298780704 0.820303020338922 0.16092485 0.19964114 prediction 0.555803443116434 Functional Gain - VGLL1 ENSG00000102243 CDS Human protein_coding chrX:135638628 chrX:135638632 synonymous SNV . 0 25 hm5C_associated_SNPs_104035 0 0 0 0 1 unknown 0.500231643921093 0.500231643921093 0 0 hm5C_site_57180 DeepMRMD:0;iRNA_m5C:0 57181 chr12 57921968 57921968 1 + C A LIHC 57921964 + 57921944 57921984 41 GCCAGAAGCCCCCTGTCTACCCCCCGAGAGCCCTGCCTCAG GCCAGAAGCCCCCTGTCTACCCCCAGAGAGCCCTGCCTCAG < 41bp 0.351439391710846 0.7778925426538 0.053349733 0.14591911 prediction 0.5557850853076 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921964 chr12:57921968 synonymous SNV . 0 25 hm5C_associated_SNPs_104036 0 0 1 0 2 chromatin 0.500231643921092 0.500231643921078 0 0 hm5C_site_57181 DeepMRMD:0;iRNA_m5C:0 57182 chr9 90500145 90500145 1 + C G rs150375971 90500144 + 90500124 90500164 41 TTTTTCCTCCTTCACCACAGCCGCATGGTCCCCTGGCCTCC TTTTTCCTCCTTCACCACAGCGGCATGGTCCCCTGGCCTCC < 41bp 0.466447834826823 0.777883390038426 0.21380085 0.65530217 prediction 0.555766780076852 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90500144 chr9:90500145 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_104037 0 0 0 0 1 exosome 0.500231638778353 0.500231643917746 0.31060434 1.02787849343144e-08 hm5C_site_57182 DeepMRMD:0.31060434;iRNA_m5C:1.02787849343144e-08 57183 chrX 26212255 26212255 1 + C A HNSC 26212251 + 26212231 26212271 41 GATGAGAAAAGTCCAAGCACCTCCCGTGATGCCTCCGTTCC GATGAGAAAAGTCCAAGCACCTCCAGTGATGCCTCCGTTCC < 41bp 0.628800733927758 0.906650812107193 0.30278784 0.9541646 prediction 0.55570015635887 Functional Gain - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26212251 chrX:26212255 nonsynonymous SNV 0.039 0 25 hm5C_associated_SNPs_104038 0 0 0 0 0 unknown 0.5002316439211 0.500231643956743 0.9083292 7.12863101881567e-11 hm5C_site_57183 DeepMRMD:0.9083292;iRNA_m5C:7.12863101881567e-11 57184 chr14 55817153 55817153 1 + C G rs560778845 55817152 + 55817132 55817172 41 GCTCCAGAAGAAAGAGCACCCCCCGGAAGTCAGCAGGGAAA GCTCCAGAAGAAAGAGCACCCGCCGGAAGTCAGCAGGGAAA < 41bp 0.526711134196103 0.804551785344606 0.04723364 0.07292679 prediction 0.555681302297006 Functional Gain - FBXO34 ENSG00000178974 CDS Human protein_coding chr14:55817152 chr14:55817153 synonymous SNV . 0 22 hm5C_associated_SNPs_104039 0 0 1 0 1 Nucleus 0.500231643921092 0.5002316439211 0 1.4432899320127e-14 hm5C_site_57184 DeepMRMD:0;iRNA_m5C:1.4432899320127e-14 57185 chr16 83983071 83983071 1 + C G rs4782865 83983070 + 83983050 83983090 41 GTGGGATGGGGAAGTGGAGACCGAGAGGCTGCTGCCGGGGA GTGGGATGGGGAAGTGGAGACGGAGAGGCTGCTGCCGGGGA < 41bp 0.528372215504631 0.806207890945501 0.5526336 0.8393943 prediction 0.555671350881739 Functional Gain - MLYCD;OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83983070 chr16:83983071 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_104040 0 0 0 0 1 unknown 0.500231970036949 0.50023164393495 0.5735214 0 hm5C_site_57185 DeepMRMD:0.5735214;iRNA_m5C:0 57186 chr1 46978076 46978076 1 + C A rs11211298 46978072 + 46978052 46978092 41 AGGCCTGGCTCCTGCATCAGCTACCCTGAACAGTAAAACCA AGGCCTGGCTCCTGCATCAGCTACACTGAACAGTAAAACCA < 41bp 0.37155797439681 0.777762563793904 0.053753495 0.07248503 prediction 0.555525127587807 Functional Gain - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46978072 chr1:46978076 synonymous SNV . 0 25 hm5C_associated_SNPs_104041 0 0 0 0 0 nucleolus 0.500231643921041 0.500231643686154 0 0 hm5C_site_57186 DeepMRMD:0;iRNA_m5C:0 57187 chr9 129643102 129643102 1 + T G GBM 129643100 + 129643080 129643120 41 CCCGAGAGAACAGATGTGTACGTGGAACAGAAACTAGAAAA CCCGAGAGAACAGATGTGTACGGGGAACAGAAACTAGAAAA < 41bp 0.573363007728221 0.851116904983475 0.25379884 0.878163 prediction 0.555507794510508 Functional Gain - ZBTB34 ENSG00000177125 CDS Human protein_coding chr9:129643100 chr9:129643102 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_104042 0 0 1 0 0 nucleoplasm 0.500231643916228 0.500231643921092 0.756326 9.72955049860502e-12 hm5C_site_57187 DeepMRMD:0.756326;iRNA_m5C:9.72955049860502e-12 57188 chr19 58991801 58991801 1 + A T LUSC 58991805 - 58991785 58991825 41 GACTGCACACCTGGCCCACTCGTGTGTGTCCGGTGGTGGAT GACTGCACACCTGGCCCACTCGTGAGTGTCCGGTGGTGGAT < 41bp 0.498831817085369 0.777745706098807 0.7701174 0.8761697 prediction 0.555491412197614 Functional Gain - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58991805 chr19:58991801 nonsynonymous SNV 0.485 1 25 hm5C_associated_SNPs_104043 0 0 1 0 0 nucleolus 0.500231643921092 0.500231643921092 0.2121046 0 hm5C_site_57188 DeepMRMD:0.2121046;iRNA_m5C:0 57189 chr14 20711736 20711736 1 + T G STAD 20711733 + 20711713 20711753 41 TTGGTTGTGGTATCTCTTTTCTATGGGACAGTCATGGTAAT TTGGTTGTGGTATCTCTTTTCTAGGGGACAGTCATGGTAAT < 41bp 0.411288671924446 0.777741216339687 0.27195364 0.5748927 prediction 0.555482432679375 Functional Gain - OR11H4 ENSG00000176198 CDS Human protein_coding chr14:20711733 chr14:20711736 stopgain 0.993 1 24 hm5C_associated_SNPs_104044 0 0 0 0 0 unknown 0.500231643921093 0.500231645459763 0.1497854 3.07733971638413e-09 hm5C_site_57189 DeepMRMD:0.1497854;iRNA_m5C:3.07733971638413e-09 57190 chr9 131768571 131768571 1 + C A OV 131768567 + 131768547 131768587 41 GCTTCTACCTGCTCATCTCTCAGGCGATGCGGTACCTTAGG GCTTCTACCTGCTCATCTCTCAGGAGATGCGGTACCTTAGG < 41bp 0.626262679327702 0.903998525902891 0.9493181 0.9538663 prediction 0.555471693150377 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131768567 chr9:131768571 nonsynonymous SNV 0.572 4 25 hm5C_associated_SNPs_104045 0 0 1 0 2 Nucleus 0.50023164392099 0.500231643921093 0.00909639999999978 2.04947170345804e-13 hm5C_site_57190 DeepMRMD:0.00909639999999978;iRNA_m5C:2.04947170345804e-13 57191 chr2 16085989 16085989 1 + C G LUSC 16085988 + 16085968 16086008 41 CGTCGCAGAAACCACAACATCCTGGAGCGCCAGCGCCGCAA CGTCGCAGAAACCACAACATCGTGGAGCGCCAGCGCCGCAA < 41bp 0.471198832591706 0.777727801294699 0.056318402 0.35810184 prediction 0.555455602589398 Functional Gain - MYCN ENSG00000134323 CDS Human protein_coding chr2:16085988 chr2:16085989 nonsynonymous SNV 0.962 5 22 hm5C_associated_SNPs_104046 0 0 0 0 0 Cytosol 0.500231215600752 0.500231230086853 0 2.89722019708449e-08 hm5C_site_57191 DeepMRMD:0;iRNA_m5C:2.89722019708449e-08 57192 chr20 61733997 61733997 1 + C G rs536915045 61733996 + 61733976 61734016 41 GCCTCCCCAGGGCGGGGCTTCCGACTCGGGCGCCCGTGAGC GCCTCCCCAGGGCGGGGCTTCGGACTCGGGCGCCCGTGAGC < 41bp 0.502729799719499 0.780436713906535 0.5782166 0.9134892 prediction 0.555413828374072 Functional Gain - HAR1A ENSG00000225978 ncRNA_exonic Human lincRNA chr20:61733996 chr20:61733997 . . 0 22 hm5C_associated_SNPs_104047 0 0 0 0 0 unknown 0.500231653481566 0.500232946068798 0.6705452 2.58517446427575e-06 hm5C_site_57192 DeepMRMD:0.6705452;iRNA_m5C:2.58517446427575e-06 57193 chr8 9190682 9190682 1 + C G rs17149803 9190681 + 9190661 9190701 41 TATCCTACAAGAAGTAGTGGCCAGGTTGGACTTTCTGATAA TATCCTACAAGAAGTAGTGGCGAGGTTGGACTTTCTGATAA < 41bp 0.506824776200401 0.784531189355223 0.19538832 0.37878415 prediction 0.555412826309645 Functional Gain - LOC157273 ENSG00000254235 ncRNA_exonic Human lincRNA chr8:9190681 chr8:9190682 . . 0 22 hm5C_associated_SNPs_104048 0 0 0 1 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_57193 DeepMRMD:0;iRNA_m5C:0 57194 chr15 42695007 42695007 1 + C A BLCA 42695003 + 42694983 42695023 41 ATCTCTCAGATGCACGGGAACAAGCAGCACCTGCAGAAGGA ATCTCTCAGATGCACGGGAACAAGAAGCACCTGCAGAAGGA < 41bp 0.386069901912508 0.777704927336827 0.15735373 0.776228 prediction 0.555409854673655 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42695003 chr15:42695007 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_104049 0 0 1 0 1 Cytosol 0.500231643977062 0.500231643945314 0.552456 0 hm5C_site_57194 DeepMRMD:0.552456;iRNA_m5C:0 57195 chr7 6647738 6647738 1 + T A rs4416743 6647734 + 6647714 6647754 41 CGCCCACCCCGCCCTGCCCACGCATCCCGGCCACACCTTCA CGCCCACCCCGCCCTGCCCACGCAACCCGGCCACACCTTCA < 41bp 0.550314309742374 0.828018347685456 0.30224854 0.43693548 prediction 0.555408075886163 Functional Gain - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6647734 chr7:6647738 nonsynonymous SNV 0.673 2 25 hm5C_associated_SNPs_104050 0 0 1 0 0 chromatin 0.500231643920769 0.500231643921092 0 6.46815934146616e-13 hm5C_site_57195 DeepMRMD:0;iRNA_m5C:6.46815934146616e-13 57196 chr5 76171269 76171269 1 + C A COAD 76171265 + 76171245 76171285 41 GGCAAGGAAAGGAAGAGATTCAAGCTCAGCAAGGGGGAACT GGCAAGGAAAGGAAGAGATTCAAGATCAGCAAGGGGGAACT < 41bp 0.632398704037915 0.910099687378609 0.38797253 0.591164 prediction 0.555401966681389 Functional Gain - S100Z ENSG00000171643 CDS Human protein_coding chr5:76171265 chr5:76171269 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_104051 0 0 0 0 1 exosome 0.500231643921076 0.500231643921092 0.182328 3.30846461338297e-14 hm5C_site_57196 DeepMRMD:0.182328;iRNA_m5C:3.30846461338297e-14 57197 chr10 45430367 45430367 1 + C A LUAD 45430363 + 45430343 45430383 41 AGTGCCCTCCAGCCCCCCAACACCCTGATGGAGCTGAGCCT AGTGCCCTCCAGCCCCCCAACACCATGATGGAGCTGAGCCT < 41bp 0.357402170576586 0.777698184142179 0.20241478 0.18336725 prediction 0.555396368284357 Functional Gain - TMEM72 ENSG00000187783 CDS Human protein_coding chr10:45430363 chr10:45430367 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_104052 0 0 0 0 0 Nucleus 0.500231643921095 0.500231644108588 0 3.74986264262134e-10 hm5C_site_57197 DeepMRMD:0;iRNA_m5C:3.74986264262134e-10 57198 chr4 130023911 130023911 1 + C G KIRC 130023910 + 130023890 130023930 41 CTCCAGCCCCACTTGGAGAACCAGGAAAACCTTTCAATGAA CTCCAGCCCCACTTGGAGAACGAGGAAAACCTTTCAATGAA < 41bp 0.519379833496552 0.797067062291664 0.9432763 0.9400753 prediction 0.555374457590223 Functional Gain - C4orf33 ENSG00000151470 CDS Human protein_coding chr4:130023910 chr4:130023911 nonsynonymous SNV 0.983 3 22 hm5C_associated_SNPs_104053 0 0 1 0 1 nucleoplasm 0.500231643921092 0.500231643921092 0 0 hm5C_site_57198 DeepMRMD:0;iRNA_m5C:0 57199 chr14 103568614 103568614 1 + T A rs10131298 103568610 + 103568590 103568630 41 GGCGCGCTATGGACGTGTGCCTGCTTTACGACGGGCTGGCA GGCGCGCTATGGACGTGTGCCTGCATTACGACGGGCTGGCA < 41bp 0.570774665292848 0.84846166612274 0.21232113 0.27893892 prediction 0.555374001659785 Functional Gain - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103568610 chr14:103568614 nonsynonymous SNV 0.866 0 25 hm5C_associated_SNPs_104054 0 0 1 0 0 cytosol 0.50023166096409 0.500231900096884 0 4.78265588910176e-07 hm5C_site_57199 DeepMRMD:0;iRNA_m5C:4.78265588910176e-07 57200 chr11 33373268 33373268 1 + T C PRAD 33373266 + 33373246 33373286 41 GCACTTTTGTGGAGGACACTCATGAAAACACAGAATTGGTA GCACTTTTGTGGAGGACACTCACGAAAACACAGAATTGGTA < 41bp 0.498141177966019 0.777679797989324 0.27958593 0.16432455 prediction 0.555359595978649 Functional Gain - HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33373266 chr11:33373268 synonymous SNV . 0 23 hm5C_associated_SNPs_104055 0 0 1 0 0 Cytosol 0.50023208414626 0.500231968182329 0 0 hm5C_site_57200 DeepMRMD:0;iRNA_m5C:0 57201 chr2 74743535 74743535 1 + C A rs140437302 74743531 + 74743511 74743551 41 TCCCGCCATTTTTCACTTCACTGCCGTTACGCCCTCGCTGG TCCCGCCATTTTTCACTTCACTGCAGTTACGCCCTCGCTGG < 41bp 0.614450492104087 0.892127533089608 0.08475003 0.15185753 prediction 0.555354081971043 Functional Gain - TLX2 ENSG00000115297 UTR3 Human protein_coding chr2:74743531 chr2:74743535 . 0.000 0 25 hm5C_associated_SNPs_104056 0 0 0 4 0 exosome 0.500231643924163 0.500231643923361 0 0 hm5C_site_57201 DeepMRMD:0;iRNA_m5C:0 Hair color 57202 chr7 99017041 99017041 1 + G T LUSC 99017045 - 99017025 99017065 41 CTCAGCCAGAGCAGCCACGACAGCCACAGTGTGTGCACTCG CTCAGCCAGAGCAGCCACGACAGCAACAGTGTGTGCACTCG < 41bp 0.364093166715856 0.777671939649005 0.2758087 0.2808497 prediction 0.55534387929801 Functional Gain - BUD31 ENSG00000106245 CDS Human protein_coding chr7:99017045 chr7:99017041 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_104057 0 0 1 1 0 Ribosome 0.500231641990821 0.500233245527715 0 3.20707378831386e-06 hm5C_site_57202 DeepMRMD:0;iRNA_m5C:3.20707378831386e-06 57203 chr9 135962254 135962254 1 + C G UCEC 135962253 + 135962233 135962273 41 CAGCGGCTACCTGGAGATCACCAAGAAGATGGGCAGCAGCT CAGCGGCTACCTGGAGATCACGAAGAAGATGGGCAGCAGCT < 41bp 0.493764682923804 0.777668185401057 0.26137242 0.641974 prediction 0.555336370802114 Functional Gain - CELP ENSG00000170827 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:135962253 chr9:135962254 . . 0 22 hm5C_associated_SNPs_104058 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.283948 0 hm5C_site_57203 DeepMRMD:0.283948;iRNA_m5C:0 57204 chr11 88911891 88911891 1 + C A LUAD 88911887 + 88911867 88911907 41 ATGAGTACATGGGAGGTCAGCACCCCACAAATCCTAACTTA ATGAGTACATGGGAGGTCAGCACCACACAAATCCTAACTTA < 41bp 0.370559478942933 0.777640133109589 0.36603335 0.48869663 prediction 0.555280266219178 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:88911887 chr11:88911891 nonsynonymous SNV 0.163 5 25 hm5C_associated_SNPs_104059 0 0 0 0 1 unknown 0.500231643949907 0.500231643921093 0 0 hm5C_site_57204 DeepMRMD:0;iRNA_m5C:0 57205 chrX 37027909 37027909 1 + C G LUAD 37027905 + 37027885 37027925 41 GAGACTGGAGTGTCCCATCTCTGCCCGGAGCCTCCAGAGAA GAGACTGGAGTGTCCCATCTCTGCGCGGAGCCTCCAGAGAA < 41bp 0.51899335974176 0.79660883551634 0.18972978 0.44692987 prediction 0.555230951549159 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37027905 chrX:37027909 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_104060 0 0 0 0 0 unknown 0.500231641447569 0.500231250639561 0 0 hm5C_site_57205 DeepMRMD:0;iRNA_m5C:0 57206 chr2 99812127 99812127 1 + T G KIRC 99812124 + 99812104 99812144 41 GCACTGGGGAGTTAGTAGTGCAGTGGCATCTGAAACCTGTG GCACTGGGGAGTTAGTAGTGCAGGGGCATCTGAAACCTGTG < 41bp 0.394647725180809 0.777597774021614 0.09389773 0.53625286 prediction 0.555195548043227 Functional Gain - MRPL30 ENSG00000185414;ENSG00000241962 CDS Human other chr2:99812124 chr2:99812127 nonsynonymous SNV 0.998 0 24 hm5C_associated_SNPs_104061 0 0 1 0 2 Cytosol 0.500231649160924 0.500231643939967 0.0725057200000001 0 hm5C_site_57206 DeepMRMD:0.0725057200000001;iRNA_m5C:0 57207 chr3 42727163 42727163 1 + T G UCEC 42727160 + 42727140 42727180 41 GCAGCGGTTGTACCAGCAGACGCTCCTGCAAGACGGGCTCA GCAGCGGTTGTACCAGCAGACGCGCCTGCAAGACGGGCTCA < 41bp 0.402391113511126 0.777581805185138 0.3696317 0.28288096 prediction 0.555163610370275 Functional Gain - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42727160 chr3:42727163 nonsynonymous SNV 0.999 2 24 hm5C_associated_SNPs_104062 0 0 0 0 0 unknown 0.50023164390438 0.500231643833007 0 0 hm5C_site_57207 DeepMRMD:0;iRNA_m5C:0 57208 chr12 31116783 31116783 1 + C A LUAD 31116779 + 31116759 31116799 41 AGGTCGGGGGAGCAGCCGTCCTGGCTGTGGGCATCTGGACC AGGTCGGGGGAGCAGCCGTCCTGGATGTGGGCATCTGGACC < 41bp 0.634474681332965 0.912056017368645 0.20901528 0.26872113 prediction 0.555162672071361 Functional Gain - TSPAN11 ENSG00000110900 CDS Human protein_coding chr12:31116779 chr12:31116783 nonsynonymous SNV 0.914 4 25 hm5C_associated_SNPs_104063 0 0 0 0 1 Cytosol 0.500231643935323 0.500232458067798 0 1.62826494953805e-06 hm5C_site_57208 DeepMRMD:0;iRNA_m5C:1.62826494953805e-06 57209 chr15 59808891 59808891 1 + C A ESCA 59808887 + 59808867 59808907 41 GAAGAAGCTCAGCCAGATGTCAGCCAGGCTTGACAAAATAG GAAGAAGCTCAGCCAGATGTCAGCAAGGCTTGACAAAATAG < 41bp 0.363262849362996 0.777576384373073 0.0698992 0.28483158 prediction 0.555152768746145 Functional Gain - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59808887 chr15:59808891 synonymous SNV . 0 25 hm5C_associated_SNPs_104064 0 0 0 0 1 Cytosol 0.500231643920987 0.500230051258252 0 0 hm5C_site_57209 DeepMRMD:0;iRNA_m5C:0 57210 chr12 8248294 8248294 1 + C A UCEC 8248290 + 8248270 8248310 41 CTTGTGGGGAGACTTCAGCACTGCCTCCAGGTAATGGGCAT CTTGTGGGGAGACTTCAGCACTGCATCCAGGTAATGGGCAT < 41bp 0.364079275331662 0.777573707598711 0.027949423 0.23369792 prediction 0.555147415197423 Functional Gain - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8248290 chr12:8248294 synonymous SNV . 0 25 hm5C_associated_SNPs_104065 0 0 1 0 2 Ribosome 0.500231567408199 0.50023165259827 0 1.70380141550908e-07 hm5C_site_57210 DeepMRMD:0;iRNA_m5C:1.70380141550908e-07 57211 chr12 20769251 20769251 1 + T A BLCA 20769247 + 20769227 20769267 41 ACCTCGGCCACAGGTCTACCCACCTTGGAGCCTGCACCAGT ACCTCGGCCACAGGTCTACCCACCATGGAGCCTGCACCAGT < 41bp 0.445747805114068 0.777564139584881 0.13788718 0.21780765 prediction 0.555128279169762 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20769247 chr12:20769251 nonsynonymous SNV 0.987 2 25 hm5C_associated_SNPs_104066 0 0 0 0 2 Nucleus 0.500231643941771 0.500231644355401 0 8.27261148472758e-10 hm5C_site_57211 DeepMRMD:0;iRNA_m5C:8.27261148472758e-10 57212 chr6 152163816 152163816 1 + C A HNSC 152163812 + 152163792 152163832 41 GGGAAGTATGGCTATGGAATCTGCCAAGGAGACTCGCTACT GGGAAGTATGGCTATGGAATCTGCAAAGGAGACTCGCTACT < 41bp 0.427285320464221 0.777555001367565 0.11626744 0.42057365 prediction 0.555110002735129 Functional Gain - ESR1 ENSG00000091831 CDS Human protein_coding chr6:152163812 chr6:152163816 synonymous SNV . 0 25 hm5C_associated_SNPs_104067 0 0 0 0 1 exosome 0.500231645933701 0.500231643935458 0 0 hm5C_site_57212 DeepMRMD:0;iRNA_m5C:0 57213 chr8 11872837 11872837 1 + C A rs560172490 11872833 + 11872813 11872853 41 CCCCTGCCTGTGGCCAGGCCCGCTCTGGCCAGGCCCTGCAC CCCCTGCCTGTGGCCAGGCCCGCTATGGCCAGGCCCTGCAC < 41bp 0.420399975190858 0.777554956035566 0.11014718 0.0974952 prediction 0.555109912071133 Functional Gain - DEFB134;DEFB130B ENSG00000255098 intronic Human other chr8:11872833 chr8:11872837 . . 0 25 hm5C_associated_SNPs_104068 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_57213 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 57214 chr7 117307076 117307076 1 + C G rs4148725 117307075 + 117307055 117307095 41 AGGGTGAAGCTCTTTCCCCACCGGAACTCAAGCAAGTGCAA AGGGTGAAGCTCTTTCCCCACGGGAACTCAAGCAAGTGCAA < 41bp 0.526572318131501 0.804124965310534 0.41508412 0.7143894 prediction 0.555105294358066 Functional Gain - CFTR ENSG00000001626 CDS Human protein_coding chr7:117307075 chr7:117307076 nonsynonymous SNV 0.002 3 22 hm5C_associated_SNPs_104069 0 0 0 0 0 exosome 0.500231644087404 0.500231643926945 0.4287788 0 hm5C_site_57214 DeepMRMD:0.4287788;iRNA_m5C:0 57215 chr9 71820036 71820036 1 + C G rs375746056 71820035 + 71820015 71820055 41 GATGGAAATGGGTGAGCAGCCCGGAATGTAGGCGGTGGCCT GATGGAAATGGGTGAGCAGCCGGGAATGTAGGCGGTGGCCT < 41bp 0.499308140282332 0.777543535473502 0.41443712 0.8486384 prediction 0.555087070947005 Functional Gain - TJP2 ENSG00000119139 UTR5 Human protein_coding chr9:71820035 chr9:71820036 . . 0 22 hm5C_associated_SNPs_104070 0 0 1 0 0 Nucleus 0.500231643921107 0.500231643921092 0.6972768 0 hm5C_site_57215 DeepMRMD:0.6972768;iRNA_m5C:0 57216 chr22 50986472 50986472 1 + C A rs543721818 50986468 + 50986448 50986488 41 CCCTGCCCCAGCCCCCACCTCAGCCCCAACCCCAACCCCAG CCCTGCCCCAGCCCCCACCTCAGCACCAACCCCAACCCCAG < 41bp 0.446915607873298 0.777539436430661 0.2891099 0.20255682 prediction 0.555078872861323 Functional Gain - KLHDC7B ENSG00000130487 UTR5 Human protein_coding chr22:50986468 chr22:50986472 . . 0 25 hm5C_associated_SNPs_104071 0 0 0 0 0 nucleolus 0.500231643921092 0.500231643921092 0 0 hm5C_site_57216 DeepMRMD:0;iRNA_m5C:0 57217 chr1 227171472 227171472 1 + C G rs541611601 227171471 + 227171451 227171491 41 CCCTGGCCCAGGCCTGTTCCCCGAGCACCTGATCGACGTGC CCCTGGCCCAGGCCTGTTCCCGGAGCACCTGATCGACGTGC < 41bp 0.459421256867819 0.777520242378324 0.82847404 0.91538763 prediction 0.555040484756649 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171471 chr1:227171472 synonymous SNV . 0 22 hm5C_associated_SNPs_104072 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0.17382718 0 hm5C_site_57217 DeepMRMD:0.17382718;iRNA_m5C:0 57218 chr7 99971777 99971777 1 + T G KIRP 99971775 + 99971755 99971795 41 CCCCTTCTCCTTCTATTACCCCTGGGAGTTAGCCACAGCTC CCCCTTCTCCTTCTATTACCCCGGGGAGTTAGCCACAGCTC < 41bp 0.594149131863155 0.871665343583487 0.03424284 0.87777364 prediction 0.555032423440665 Functional Gain - PILRA ENSG00000085514 CDS Human protein_coding chr7:99971775 chr7:99971777 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_104073 0 0 1 0 0 Nucleus 0.500231643922008 0.500231643921093 0.75554728 0 hm5C_site_57218 DeepMRMD:0.75554728;iRNA_m5C:0 57219 chr1 76253189 76253189 1 + C G LUAD 76253188 + 76253168 76253208 41 CTTTATTTTGAAAGGGCACTCCACAGAAGGATGTTATTATC CTTTATTTTGAAAGGGCACTCGACAGAAGGATGTTATTATC < 41bp 0.49467750261197 0.777499850339758 0.2468018 0.23414728 prediction 0.554999700679515 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253188 chr1:76253189 nonsynonymous SNV 0.796 1 22 hm5C_associated_SNPs_104074 0 0 1 0 1 Nucleus 0.500231643200061 0.500231643742867 0 1.0856129328829e-09 hm5C_site_57219 DeepMRMD:0;iRNA_m5C:1.0856129328829e-09 57220 chr6 5086818 5086818 1 + C G rs7762427 5086817 + 5086797 5086837 41 GCCTGGAGAGTTTCGAAGAGCCGTGGGGCGGGGTTGATTAG GCCTGGAGAGTTTCGAAGAGCGGTGGGGCGGGGTTGATTAG < 41bp 0.502038905691863 0.779526311239223 0.52141017 0.5508922 prediction 0.554974811094718 Functional Gain - LYRM4-AS1 ENSG00000219607 UTR3 Human protein_coding chr6:5086817 chr6:5086818 . . 0 22 hm5C_associated_SNPs_104075 0 0 0 0 0 unknown 0.500231643921095 0.500231643921092 0.0589640600000001 0 hm5C_site_57220 DeepMRMD:0.0589640600000001;iRNA_m5C:0 57221 chr7 142920108 142920108 1 + C G LUAD 142920107 + 142920087 142920127 41 GCCTGGAAGCGGTTTCAGCACCAAGTTCCTCTTTACCTAAA GCCTGGAAGCGGTTTCAGCACGAAGTTCCTCTTTACCTAAA < 41bp 0.519057637684832 0.79654187087531 0.21984261 0.39200878 prediction 0.554968466380956 Functional Gain - TAS2R40 ENSG00000221937 CDS Human protein_coding chr7:142920107 chr7:142920108 nonsynonymous SNV 0.105 0 22 hm5C_associated_SNPs_104076 0 0 0 0 0 unknown 0.500231643480629 0.500231643921091 0 8.80924222457224e-10 hm5C_site_57221 DeepMRMD:0;iRNA_m5C:8.80924222457224e-10 57222 chr14 56585389 56585389 1 + C G LUAD 56585388 + 56585368 56585408 41 AGCGGGGCTCCATGTTTTCCCCTGGCCAGGAGGAACACTGC AGCGGGGCTCCATGTTTTCCCGTGGCCAGGAGGAACACTGC < 41bp 0.526422203309169 0.803897807308221 0.055363685 0.36262348 prediction 0.554951207998103 Functional Gain - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56585388 chr14:56585389 nonsynonymous SNV 0.988 1 22 hm5C_associated_SNPs_104077 0 0 1 0 1 nucleus 0.500231643921093 0.500231643921092 0 0 hm5C_site_57222 DeepMRMD:0;iRNA_m5C:0 57223 chr19 46376204 46376204 1 + C A LIHC 46376200 + 46376180 46376220 41 TCAACAACCTAATGTCAGAACAGACACCAGCACCTCCCAAA TCAACAACCTAATGTCAGAACAGAAACCAGCACCTCCCAAA < 41bp 0.37536756696539 0.777474237531284 0.014580369 0.03644061 prediction 0.554948475062567 Functional Gain - FOXA3 ENSG00000170608 CDS Human protein_coding chr19:46376200 chr19:46376204 nonsynonymous SNV 0.909 0 25 hm5C_associated_SNPs_104078 0 0 1 0 0 Cytosol 0.500138614018088 0.500180555783791 0 8.38835314067587e-05 hm5C_site_57223 DeepMRMD:0;iRNA_m5C:8.38835314067587e-05 57224 chr5 140553912 140553912 1 + C A BLCA 140553908 + 140553888 140553928 41 TGCCGTCCCAGGACCCGCACCTGCCCCTCGCCTCCCTGGTC TGCCGTCCCAGGACCCGCACCTGCACCTCGCCTCCCTGGTC < 41bp 0.365991289422723 0.777471591909147 0.10550961 0.13977596 prediction 0.554943183818295 Functional Gain - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140553908 chr5:140553912 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_104079 0 0 0 0 0 exosome 0.500231643923201 0.500231643942326 0 3.82505138674105e-11 hm5C_site_57224 DeepMRMD:0;iRNA_m5C:3.82505138674105e-11 57225 chr1 22852789 22852789 1 + C G LUSC 22852788 + 22852768 22852808 41 CGCAGGTGTTTGTGACGTTGCCAGATTCTCAGGCATCTCAG CGCAGGTGTTTGTGACGTTGCGAGATTCTCAGGCATCTCAG < 41bp 0.530742876753621 0.808213267564698 0.90943766 0.9240955 prediction 0.554940781622153 Functional Gain - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22852788 chr1:22852789 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_104080 0 0 1 0 1 Nucleus 0.500230839458665 0.50023164426191 0.0293156799999998 1.60960649031594e-06 hm5C_site_57225 DeepMRMD:0.0293156799999998;iRNA_m5C:1.60960649031594e-06 57226 chr11 4615815 4615815 1 + T A rs139291466 4615811 + 4615791 4615831 41 TCCAATGTGGTTGTCCACTCCTACTGTAAGCACATAGCTTT TCCAATGTGGTTGTCCACTCCTACAGTAAGCACATAGCTTT < 41bp 0.560058541330949 0.837521382558965 0.178139 0.88458145 prediction 0.554925682456033 Functional Gain - OR52I1 ENSG00000232268 CDS Human protein_coding chr11:4615811 chr11:4615815 nonsynonymous SNV 0.974 4 25 hm5C_associated_SNPs_104081 0 0 0 0 0 unknown 0.500231604306198 0.500231552696962 0.7691629 0 hm5C_site_57226 DeepMRMD:0.7691629;iRNA_m5C:0 57227 chr8 103573044 103573044 1 + C A rs200771536 103573040 + 103573020 103573060 41 TGCAGCCCCTGCAACCCGTGCAGCCCATATGATCCTTGCAA TGCAGCCCCTGCAACCCGTGCAGCACATATGATCCTTGCAA < 41bp 0.380399574346614 0.777440567747893 0.28623357 0.47745055 prediction 0.554881135495786 Functional Gain - ODF1 ENSG00000155087 CDS Human protein_coding chr8:103573040 chr8:103573044 nonsynonymous SNV 0.372 1 25 hm5C_associated_SNPs_104082 0 0 0 0 0 unknown 0.500231643921092 0.500231644284302 0 7.26420035235265e-10 hm5C_site_57227 DeepMRMD:0;iRNA_m5C:7.26420035235265e-10 57228 chr11 94038848 94038848 1 + C A LUSC 94038844 + 94038824 94038864 41 CTGCTAGAGCTGTGGACAGTCATGCCCACCTGGGCTGGGGA CTGCTAGAGCTGTGGACAGTCATGACCACCTGGGCTGGGGA < 41bp 0.403258905974881 0.777440124199775 0.5134494 0.5564381 prediction 0.55488024839955 Functional Gain - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94038844 chr11:94038848 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_104083 0 0 0 0 1 unknown 0.500231639706768 0.500231644138982 0.0859774000000002 8.86442941272492e-09 hm5C_site_57228 DeepMRMD:0.0859774000000002;iRNA_m5C:8.86442941272492e-09 57229 chr19 41725367 41725367 1 + T G OV 41725365 + 41725345 41725385 41 CTTGGCGCTGTGCGGCTGGGCGTGCATGGCCCCCAGGGGTG CTTGGCGCTGTGCGGCTGGGCGGGCATGGCCCCCAGGGGTG < 41bp 0.589539463602682 0.866956958737721 0.3500686 0.837396 prediction 0.554834990270078 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41725365 chr19:41725367 nonsynonymous SNV 0.122 0 23 hm5C_associated_SNPs_104084 0 0 1 0 1 Nucleus 0.500231643921093 0.500231643921092 0.674792 0 hm5C_site_57229 DeepMRMD:0.674792;iRNA_m5C:0 57230 chr1 229772136 229772136 1 + C G COAD 229772132 + 229772112 229772152 41 GGCCCTTCTCCCGGACACCCCAGGCCCAGAGCCAGAGCTGT GGCCCTTCTCCCGGACACCCCAGGGCCAGAGCCAGAGCTGT < 41bp 0.489491019626854 0.777390938372839 0.7655735 0.88654506 prediction 0.554781876745677 Functional Gain - URB2 ENSG00000135763 CDS Human protein_coding chr1:229772132 chr1:229772136 synonymous SNV . 0 25 hm5C_associated_SNPs_104085 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0.24194312 0 hm5C_site_57230 DeepMRMD:0.24194312;iRNA_m5C:0 57231 chr17 65040854 65040854 1 + C A LUAD 65040850 + 65040830 65040870 41 AGGCATCGTGCTGGCCATGACAGCCGTGGTAACCGACCACT AGGCATCGTGCTGGCCATGACAGCAGTGGTAACCGACCACT < 41bp 0.624995195677128 0.902384763523401 0.32059956 0.37595713 prediction 0.554779135692546 Functional Gain - CACNG1 ENSG00000108878 CDS Human protein_coding chr17:65040850 chr17:65040854 synonymous SNV . 0 25 hm5C_associated_SNPs_104086 0 0 0 0 0 unknown 0.500231643921093 0.500231643909441 0 0 hm5C_site_57231 DeepMRMD:0;iRNA_m5C:0 57232 chr16 30977133 30977133 1 + C G GBM 30977132 + 30977112 30977152 41 GACCTGATGGGCCGCCGCCCCCTGAGTACCCCCCACCTCCT GACCTGATGGGCCGCCGCCCCGTGAGTACCCCCCACCTCCT < 41bp 0.461857169083622 0.777388208661957 0.104846805 0.23724458 prediction 0.554776417323915 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30977132 chr16:30977133 nonsynonymous SNV 0.639 3 22 hm5C_associated_SNPs_104087 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921093 0 4.44089209850063e-16 hm5C_site_57232 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 57233 chr17 7317763 7317763 1 + C A PRAD 7317759 + 7317739 7317779 41 GTTCGATGGCTCAGTCCTGGCTGCCTATGGCAACGTCATTG GTTCGATGGCTCAGTCCTGGCTGCATATGGCAACGTCATTG < 41bp 0.354984309413687 0.777387553583458 0.08717099 0.5890981 prediction 0.554775107166917 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7317759 chr17:7317763 synonymous SNV . 0 25 hm5C_associated_SNPs_104088 0 0 0 0 1 chromatin 0.500231643921099 0.500231643927898 0.1781962 1.35988997840286e-11 hm5C_site_57233 DeepMRMD:0.1781962;iRNA_m5C:1.35988997840286e-11 57234 chr2 110373589 110373589 1 + C A UCEC 110373585 + 110373565 110373605 41 AGGAGGGAGTGGGGGAGGAACGACCTGTTAAAGGCCACTCG AGGAGGGAGTGGGGGAGGAACGACATGTTAAAGGCCACTCG < 41bp 0.626919150903671 0.904295444619229 0.7945771 0.58153075 prediction 0.554752587431116 Functional Gain - SOWAHC ENSG00000198142 CDS Human protein_coding chr2:110373585 chr2:110373589 nonsynonymous SNV 0.128 0 25 hm5C_associated_SNPs_104089 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57234 DeepMRMD:0;iRNA_m5C:0 57235 chr8 38034214 38034214 1 + C A rs77568784 38034210 + 38034190 38034230 41 TTCCCGAGACCCCAGAGTCACTGACCTCCGTCCCTCAGCTT TTCCCGAGACCCCAGAGTCACTGAACTCCGTCCCTCAGCTT < 41bp 0.589155519909323 0.866530107411835 0.46075672 0.8222428 prediction 0.554749175005024 Functional Gain - BAG4;LSM1 ENSG00000156735;ENSG00000175324 UTR5 Human other chr8:38034210 chr8:38034214 . . 0 25 hm5C_associated_SNPs_104090 0 0 0 0 0 unknown 0.500231643880193 0.500231643926088 0.6444856 9.17887987839094e-11 hm5C_site_57235 DeepMRMD:0.6444856;iRNA_m5C:9.17887987839094e-11 57236 chrX 149531751 149531751 1 + C G rs782493703 149531750 + 149531730 149531770 41 GCTGCCCGCGCCGGCGGCCGCCCGCCCCTCGGACACTGCCC GCTGCCCGCGCCGGCGGCCGCGCGCCCCTCGGACACTGCCC < 41bp 0.532131226432663 0.809501697880844 0.3205487 0.5685712 prediction 0.554740942896362 Functional Gain - MAMLD1 ENSG00000013619 UTR5 Human protein_coding chrX:149531750 chrX:149531751 . . 0 22 hm5C_associated_SNPs_104091 0 0 0 0 1 Nucleus 0.500231921199794 0.500231646851637 0.1371424 0 hm5C_site_57236 DeepMRMD:0.1371424;iRNA_m5C:0 57237 chr17 4488006 4488006 1 + C A rs145890865 4488002 + 4487982 4488022 41 GTGCGCGCGCTGCACGAGGACATGCGGGGGCTGCAGCGCGG GTGCGCGCGCTGCACGAGGACATGAGGGGGCTGCAGCGCGG < 41bp 0.597916081575076 0.875267206934163 0.6995465 0.8463309 prediction 0.554702250718175 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4488002 chr17:4488006 synonymous SNV . 0 25 hm5C_associated_SNPs_104092 0 0 0 0 0 insoluble cytoplasm 0.500231645137474 0.500231645305922 0.2935688 3.36895622510269e-10 hm5C_site_57237 DeepMRMD:0.2935688;iRNA_m5C:3.36895622510269e-10 57238 chr2 27804606 27804606 1 + C A LUSC 27804602 + 27804582 27804622 41 AAGAGAAGCCATCGCAGTCCCGCTCGGAGGAGCCATCGCAG AAGAGAAGCCATCGCAGTCCCGCTAGGAGGAGCCATCGCAG < 41bp 0.38556360287204 0.7773473368141 0.01610753 0.21461874 prediction 0.5546946736282 Functional Gain - C2orf16 ENSG00000221843 CDS Human protein_coding chr2:27804602 chr2:27804606 synonymous SNV . 0 25 hm5C_associated_SNPs_104093 0 0 0 0 0 chromatin 0.500231735500698 0.500231643921852 0 0 hm5C_site_57238 DeepMRMD:0;iRNA_m5C:0 57239 chr1 12853498 12853498 1 + T G LGG 12853496 + 12853476 12853516 41 GTGCTCTATCTCCCACTCTTCATGGAGGCCTTCAGCAGGAG GTGCTCTATCTCCCACTCTTCAGGGAGGCCTTCAGCAGGAG < 41bp 0.597646430191451 0.874984792712513 0.115002334 0.91348195 prediction 0.554676725042125 Functional Gain - PRAMEF1 ENSG00000116721 CDS Human protein_coding chr1:12853496 chr1:12853498 nonsynonymous SNV 0.004 1 23 hm5C_associated_SNPs_104094 0 0 0 0 0 unknown 0.50023162279123 0.500231643921054 0.8269639 4.22596486693294e-08 hm5C_site_57239 DeepMRMD:0.8269639;iRNA_m5C:4.22596486693294e-08 57240 chr19 35551550 35551550 1 + C G UCEC 35551549 + 35551529 35551569 41 AGGCGGAACCGGGTCCTGTCCCGATGGCGAGTGTTTGCCGG AGGCGGAACCGGGTCCTGTCCGGATGGCGAGTGTTTGCCGG < 41bp 0.467893774801989 0.777337897096802 0.17154485 0.5625905 prediction 0.554675794193604 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35551549 chr19:35551550 nonsynonymous SNV 0.988 2 22 hm5C_associated_SNPs_104095 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921092 0.125181 0 hm5C_site_57240 DeepMRMD:0.125181;iRNA_m5C:0 57241 chr20 57019226 57019226 1 + C A LAML 57019222 + 57019202 57019242 41 GGGAAGGAAGAAGGCCTTAGCACCCGGCTCTTGGCTCTGGT GGGAAGGAAGAAGGCCTTAGCACCAGGCTCTTGGCTCTGGT < 41bp 0.378514206171239 0.777334345443751 0.28442514 0.33461416 prediction 0.554668690887501 Functional Gain - VAPB ENSG00000124164 CDS Human protein_coding chr20:57019222 chr20:57019226 synonymous SNV . 0 25 hm5C_associated_SNPs_104096 0 0 1 1 1 Ribosome 0.500231643921092 0.500231643921131 0 7.72715225139109e-14 hm5C_site_57241 DeepMRMD:0;iRNA_m5C:7.72715225139109e-14 57242 chr19 46733560 46733560 1 + T G rs187146043 46733557 + 46733537 46733577 41 CCATGACTCCTTACCTGATGCTGTGCCAGCCACACAAGAGA CCATGACTCCTTACCTGATGCTGGGCCAGCCACACAAGAGA < 41bp 0.38082828032915 0.777333495696828 0.20494804 0.2985766 prediction 0.554666991393657 Functional Gain - IGFL1 ENSG00000188293 CDS Human protein_coding chr19:46733557 chr19:46733560 nonsynonymous SNV 0.023 3 24 hm5C_associated_SNPs_104097 0 0 0 0 1 exosome 0.500231643927584 0.500231384906877 0 0 hm5C_site_57242 DeepMRMD:0;iRNA_m5C:0 57243 chr5 140554031 140554031 1 + C A LUSC 140554027 + 140554007 140554047 41 GTGGGCGCCACAGACCGCGGCTCCCCCGCGCTGAGCAGCGA GTGGGCGCCACAGACCGCGGCTCCACCGCGCTGAGCAGCGA < 41bp 0.361508092952088 0.777321272624253 0.062360108 0.64375204 prediction 0.554642545248506 Functional Gain - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140554027 chr5:140554031 nonsynonymous SNV 0.180 3 25 hm5C_associated_SNPs_104098 0 0 0 0 0 exosome 0.500231643921092 0.500231674333884 0.28750408 6.08255836809235e-08 hm5C_site_57243 DeepMRMD:0.28750408;iRNA_m5C:6.08255836809235e-08 57244 chr6 1314099 1314099 1 + T G rs561503035 1314096 + 1314076 1314116 41 CGCAGCCCTGCAGGCGGCCTCAGTCCGCCGCCCTGGCCCGC CGCAGCCCTGCAGGCGGCCTCAGGCCGCCGCCCTGGCCCGC < 41bp 0.580128196408915 0.857446119026317 0.60518146 0.9204536 prediction 0.554635845234804 Functional Gain - FOXQ1 ENSG00000164379 CDS Human protein_coding chr6:1314096 chr6:1314099 nonsynonymous SNV 0.009 1 24 hm5C_associated_SNPs_104099 0 0 0 0 0 exosome 0.500231627845778 0.500231643911359 0.63054428 3.2131161065152e-08 hm5C_site_57244 DeepMRMD:0.63054428;iRNA_m5C:3.2131161065152e-08 57245 chr10 43604576 43604576 1 + C A UCEC 43604572 + 43604552 43604592 41 AGACTTCCAGGGCCCAGGAGCGGGCGTCCTCTTGCTCCACT AGACTTCCAGGGCCCAGGAGCGGGAGTCCTCTTGCTCCACT < 41bp 0.632469049063893 0.90978309939089 0.93282664 0.93877363 prediction 0.554628100653994 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43604572 chr10:43604576 synonymous SNV . 0 25 hm5C_associated_SNPs_104100 0 0 0 0 1 Cytosol 0.500231643922992 0.500231644969078 0.01189398 2.09217287938657e-09 hm5C_site_57245 DeepMRMD:0.01189398;iRNA_m5C:2.09217287938657e-09 57246 chr6 26156793 26156793 1 + T G UCEC 26156791 + 26156771 26156811 41 CAAGGAGCGCAGCGGCGTATCTTTGGCCGCTCTCAAGAAAG CAAGGAGCGCAGCGGCGTATCTGTGGCCGCTCTCAAGAAAG < 41bp 0.453751472479322 0.777313247137594 0.07819387 0.1943863 prediction 0.554626494275187 Functional Gain - HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26156791 chr6:26156793 nonsynonymous SNV 0.221 1 23 hm5C_associated_SNPs_104101 0 0 1 0 0 Ribosome 0.500261444325429 0.500238887214617 0 0 hm5C_site_57246 DeepMRMD:0;iRNA_m5C:0 57247 chr4 103534694 103534694 1 + C A HNSC 103534690 + 103534670 103534710 41 GCCCAGTGAAGACCACCTCTCAGGCCCACTCGCTGCCTCTC GCCCAGTGAAGACCACCTCTCAGGACCACTCGCTGCCTCTC < 41bp 0.633550562516975 0.910859233777471 0.93374705 0.94125646 prediction 0.554617342520992 Functional Gain - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103534690 chr4:103534694 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_104102 0 0 0 0 1 Ribosome 0.500231645136797 0.500231644021091 0.0150188199999999 0 hm5C_site_57247 DeepMRMD:0.0150188199999999;iRNA_m5C:0 57248 chr20 31601670 31601670 1 + C A rs45589833 31601666 + 31601646 31601686 41 TGTGGAACTGCTGGCTGACACCCGCGTGACCCAGAGCTCCA TGTGGAACTGCTGGCTGACACCCGAGTGACCCAGAGCTCCA < 41bp 0.633735703828309 0.911030643475164 0.31098223 0.8208331 prediction 0.554589879293711 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31601666 chr20:31601670 synonymous SNV . 0 25 hm5C_associated_SNPs_104103 0 0 1 0 2 cytosol 0.50023164391917 0.500231643921381 0.6416662 4.42335057471155e-12 hm5C_site_57248 DeepMRMD:0.6416662;iRNA_m5C:4.42335057471155e-12 57249 chr11 119206597 119206597 1 + C G TGCT 119206596 + 119206576 119206616 41 CTTCACCCTGAGGCTGGCTACCCAGGCACTCAGCCAGCTCC CTTCACCCTGAGGCTGGCTACGCAGGCACTCAGCCAGCTCC < 41bp 0.475104471405744 0.777269239472089 0.65275836 0.25204444 prediction 0.554538478944178 Functional Gain - RNF26 ENSG00000173456 CDS Human protein_coding chr11:119206596 chr11:119206597 synonymous SNV . 0 22 hm5C_associated_SNPs_104104 0 0 1 0 0 chromatin 0.500231643886247 0.500231656224738 0 2.46769820133608e-08 hm5C_site_57249 DeepMRMD:0;iRNA_m5C:2.46769820133608e-08 57250 chr11 126110771 126110771 1 + C G SKCM 126110767 + 126110747 126110787 41 AGGCATTAGTGCTGCAGTTGCGCCCCAAGTTCCAGCCCTCA AGGCATTAGTGCTGCAGTTGCGCCGCAAGTTCCAGCCCTCA < 41bp 0.496087886707649 0.777268676392328 0.13073266 0.33313972 prediction 0.554537352784657 Functional Gain - FAM118B ENSG00000197798 CDS Human protein_coding chr11:126110767 chr11:126110771 synonymous SNV . 0 25 hm5C_associated_SNPs_104105 0 0 0 0 1 Ribosome 0.500233297845204 0.500231642752348 0 0 hm5C_site_57250 DeepMRMD:0;iRNA_m5C:0 57251 chr22 21988641 21988641 1 + C G rs149779766 21988640 + 21988620 21988660 41 CCCAGCCTCAGCACCGTACACCGGCACCGTGTACGGCCGAC CCCAGCCTCAGCACCGTACACGGGCACCGTGTACGGCCGAC < 41bp 0.46969401872899 0.777266758291546 0.38400877 0.6029146 prediction 0.554533516583091 Functional Gain - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21988640 chr22:21988641 nonsynonymous SNV 0.500 3 22 hm5C_associated_SNPs_104106 0 0 0 0 0 nucleolus 0.500231643921337 0.500231643921211 0.2058292 0 hm5C_site_57251 DeepMRMD:0.2058292;iRNA_m5C:0 57252 chr16 67914579 67914579 1 + C G OV 67914575 + 67914555 67914595 41 TGTCATCTCCTCAGCTTCCACTGCCCTGTCCCAGGACATCC TGTCATCTCCTCAGCTTCCACTGCGCTGTCCCAGGACATCC < 41bp 0.512031942058337 0.789284316106709 0.07099965 0.14499524 prediction 0.554504748096744 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914575 chr16:67914579 synonymous SNV . 0 25 hm5C_associated_SNPs_104107 0 0 1 0 0 Cytosol 0.500231643921089 0.500231632007443 0 0 hm5C_site_57252 DeepMRMD:0;iRNA_m5C:0 57253 chr14 55510099 55510099 1 + T G GBM 55510097 + 55510077 55510117 41 GAATTGTAGTAGTCGGCACTCTTCAGGGCTTCCGTCTAAAA GAATTGTAGTAGTCGGCACTCTGCAGGGCTTCCGTCTAAAA < 41bp 0.532417646041081 0.809669785320162 0.077460915 0.10014936 prediction 0.554504278558161 Functional Gain - SOCS4 ENSG00000180008 CDS Human protein_coding chr14:55510097 chr14:55510099 nonsynonymous SNV 0.969 0 23 hm5C_associated_SNPs_104108 0 0 1 0 0 Cytosol 0.50023164392096 0.500231643920867 0 0 hm5C_site_57253 DeepMRMD:0;iRNA_m5C:0 57254 chr2 14775603 14775603 1 + C G UCEC 14775602 + 14775582 14775622 41 AGCTCTCCAGCCCCAGGTCTCCTGACATTGTGTTCCAGGCT AGCTCTCCAGCCCCAGGTCTCGTGACATTGTGTTCCAGGCT < 41bp 0.472187628515689 0.7772451467832 0.13286424 0.69173527 prediction 0.5544902935664 Functional Gain - FAM84A ENSG00000265629 CDS Human other chr2:14775602 chr2:14775603 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_104109 0 0 0 0 0 Ribosome 0.50023167017453 0.500232550561543 0.38347054 1.76077402591623e-06 hm5C_site_57254 DeepMRMD:0.38347054;iRNA_m5C:1.76077402591623e-06 57255 chr12 108098446 108098446 1 + T A SKCM 108098442 + 108098422 108098462 41 TTTGTATGACTGCCGAAGTCCAGATGAAAGCCATCGAATGT TTTGTATGACTGCCGAAGTCCAGAAGAAAGCCATCGAATGT < 41bp 0.460698890196193 0.777221350898812 0.32934773 0.20978165 prediction 0.554442701797623 Functional Gain - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108098442 chr12:108098446 nonsynonymous SNV 0.784 0 25 hm5C_associated_SNPs_104110 0 0 1 0 2 Ribosome 0.500234914469228 0.500231643957567 0 0 hm5C_site_57255 DeepMRMD:0;iRNA_m5C:0 57256 chr10 105128280 105128280 1 + C A BLCA 105128276 + 105128256 105128296 41 GGCCACGGTCGTCTCAGGTTCAGCCTCAGGTCCTGCGGCTC GGCCACGGTCGTCTCAGGTTCAGCATCAGGTCCTGCGGCTC < 41bp 0.622485323322713 0.899692028491496 0.072111756 0.07896721 prediction 0.554413410337567 Functional Gain - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128276 chr10:105128280 synonymous SNV . 0 25 hm5C_associated_SNPs_104111 0 0 1 0 1 cytosol 0.500231643921081 0.500231643921093 0 2.33146835171283e-14 hm5C_site_57256 DeepMRMD:0;iRNA_m5C:2.33146835171283e-14 57257 chr4 70156323 70156323 1 + C G LUAD 70156322 + 70156302 70156342 41 AATCCTAGGTCTTCCAAAAACCAGAGCTTTTATAACTCATG AATCCTAGGTCTTCCAAAAACGAGAGCTTTTATAACTCATG < 41bp 0.49031572758362 0.777201039226866 0.18334267 0.27774924 prediction 0.554402078453732 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70156322 chr4:70156323 synonymous SNV . 0 22 hm5C_associated_SNPs_104112 0 0 0 0 1 exosome 0.50022358276666 0.500231632486444 0 1.60994395670411e-05 hm5C_site_57257 DeepMRMD:0;iRNA_m5C:1.60994395670411e-05 57258 chr12 56031319 56031319 1 + T A SKCM 56031315 + 56031295 56031335 41 TCATTATGATCCCCTTCTCTCTGATTGTCACCTCTTACATC TCATTATGATCCCCTTCTCTCTGAATGTCACCTCTTACATC < 41bp 0.482193978107036 0.777195985352818 0.0138988495 0.03073442 prediction 0.554391970705636 Functional Gain - OR10P1 ENSG00000175398 CDS Human protein_coding chr12:56031315 chr12:56031319 nonsynonymous SNV 0.043 4 25 hm5C_associated_SNPs_104113 0 0 0 0 0 exosome 0.500231643921093 0.50023164392086 0 0 hm5C_site_57258 DeepMRMD:0;iRNA_m5C:0 57259 chr7 53103859 53103859 1 + C A LUAD 53103855 + 53103835 53103875 41 AGCCCGCCCCGCAGGCCGCCCCGCCGCCCAGGAGCTCCTGG AGCCCGCCCCGCAGGCCGCCCCGCAGCCCAGGAGCTCCTGG < 41bp 0.404293534553179 0.77718682071562 0.45035017 0.3641634 prediction 0.55437364143124 Functional Gain - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103855 chr7:53103859 synonymous SNV . 0 25 hm5C_associated_SNPs_104114 0 0 0 0 0 unknown 0.500231643921175 0.500231643921062 0 0 hm5C_site_57259 DeepMRMD:0;iRNA_m5C:0 57260 chr17 34893216 34893216 1 + T G BRCA 34893214 + 34893194 34893234 41 GAGCTTCTCGGTGTAATTATCTTTGGGGCAGGGCTGTTGTA GAGCTTCTCGGTGTAATTATCTGTGGGGCAGGGCTGTTGTA < 41bp 0.454927503787076 0.777177038673726 0.090584606 0.24616262 prediction 0.554354077347453 Functional Gain - PIGW ENSG00000184886 CDS Human other chr17:34893214 chr17:34893216 nonsynonymous SNV 0.688 0 23 hm5C_associated_SNPs_104115 0 0 1 0 0 Ribosome 0.500231643920978 0.500231643931391 0 2.08255634959187e-11 hm5C_site_57260 DeepMRMD:0;iRNA_m5C:2.08255634959187e-11 57261 chr7 36193946 36193946 1 + C G KIRC 36193945 + 36193925 36193965 41 TGGCGGACCATGGGGAGCACCCTGGGCTGCCACCGCTCCAT TGGCGGACCATGGGGAGCACCGTGGGCTGCCACCGCTCCAT < 41bp 0.462320936432165 0.777174926362944 0.9298306 0.9398949 prediction 0.554349852725889 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36193945 chr7:36193946 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_104116 0 0 1 0 0 cytosol 0.500231643920746 0.500231643916192 0.0201286000000001 0 hm5C_site_57261 DeepMRMD:0.0201286000000001;iRNA_m5C:0 57262 chr7 94293249 94293249 1 + C A LUSC 94293245 + 94293225 94293265 41 CTTCGTGACAAGCATGATGACCGGCCGTGCTGCCCGTTGGG CTTCGTGACAAGCATGATGACCGGACGTGCTGCCCGTTGGG < 41bp 0.375750015944523 0.777164970327884 0.114917725 0.4074005 prediction 0.554329940655768 Functional Gain - PEG10 ENSG00000242265 CDS Human protein_coding chr7:94293245 chr7:94293249 synonymous SNV . 0 25 hm5C_associated_SNPs_104117 0 0 1 0 0 Endoplasmic reticulum 0.500231642586934 0.500231704419026 0 1.2366418289389e-07 hm5C_site_57262 DeepMRMD:0;iRNA_m5C:1.2366418289389e-07 57263 chr20 62670791 62670791 1 + C G rs2427596 62670787 + 62670767 62670807 41 TGCCTCCGGAGGGGTGACCACGGCCTGGGCTCAGAGACTGC TGCCTCCGGAGGGGTGACCACGGCGTGGGCTCAGAGACTGC < 41bp 0.500167963100177 0.777318305123345 0.36329633 0.8452874 prediction 0.554300684046336 Functional Gain - C20orf204 ENSG00000196421 ncRNA_exonic Human protein_coding chr20:62670787 chr20:62670791 . . 0 25 hm5C_associated_SNPs_104118 0 0 1 0 0 unknown 0.500231741903469 0.500231641349428 0.6905748 0 hm5C_site_57263 DeepMRMD:0.6905748;iRNA_m5C:0 57264 chr2 219000292 219000292 1 + C G rs11574750 219000288 + 219000268 219000308 41 GGCCATGCGGGTCATCTTTGCTGTCGTCCTCATCTTCCTGC GGCCATGCGGGTCATCTTTGCTGTGGTCCTCATCTTCCTGC < 41bp 0.496083160917191 0.777149517992033 0.14679235 0.3246557 prediction 0.554299035984066 Functional Gain - CXCR2 ENSG00000180871 CDS Human protein_coding chr2:219000288 chr2:219000292 synonymous SNV . 0 25 hm5C_associated_SNPs_104119 0 0 0 0 0 exosome 0.500231610807551 0.500232125566852 0 1.02951860037059e-06 hm5C_site_57264 DeepMRMD:0;iRNA_m5C:1.02951860037059e-06 57265 chr5 40681879 40681879 1 + C A HNSC 40681875 + 40681855 40681895 41 TTTCGGCGCCGCCGGAGCTTCCGCCGCATCGCGGGCGCCGA TTTCGGCGCCGCCGGAGCTTCCGCAGCATCGCGGGCGCCGA < 41bp 0.627941954641195 0.905091345246493 0.8665674 0.87906337 prediction 0.554298781210596 Functional Gain - PTGER4 ENSG00000171522 CDS Human protein_coding chr5:40681875 chr5:40681879 nonsynonymous SNV 0.953 2 25 hm5C_associated_SNPs_104120 0 0 0 0 1 Cytosol 0.500231644328384 0.500231643921093 0.02499194 0 hm5C_site_57265 DeepMRMD:0.02499194;iRNA_m5C:0 57266 chr18 60242089 60242089 1 + C G LUAD 60242085 + 60242065 60242105 41 CTTACCAGGCTCTCCCCTTGCTGCCGGCGTGTTACCCAGCC CTTACCAGGCTCTCCCCTTGCTGCGGGCGTGTTACCCAGCC < 41bp 0.531584108078254 0.80872260820272 0.1826208 0.30696446 prediction 0.554277000248932 Functional Gain - ZCCHC2 ENSG00000141664 CDS Human protein_coding chr18:60242085 chr18:60242089 synonymous SNV . 0 25 hm5C_associated_SNPs_104121 0 0 1 0 0 chromatin 0.500231643901902 0.500231666150676 0 4.44975474245268e-08 hm5C_site_57266 DeepMRMD:0;iRNA_m5C:4.44975474245268e-08 57267 chr15 69452992 69452992 1 + C G rs372391353 69452991 + 69452971 69453011 41 CTCACACAAGCGCTTCCTTGCCGAGAGGCTGGAGCTGCGGC CTCACACAAGCGCTTCCTTGCGGAGAGGCTGGAGCTGCGGC < 41bp 0.499064870956138 0.777130304846643 0.47347233 0.9014838 prediction 0.554260609693285 Functional Gain - MIR548H4 ENSG00000266374 ncRNA_exonic Human other chr15:69452991 chr15:69452992 . . 0 22 hm5C_associated_SNPs_104122 0 0 1 0 0 unknown 0.500231694339223 0.500231975181494 0.8029676 5.61684541766638e-07 hm5C_site_57267 DeepMRMD:0.8029676;iRNA_m5C:5.61684541766638e-07 57268 chr17 21094308 21094308 1 + C G HNSC 21094307 + 21094287 21094327 41 CGAAGCCCTGTGGAGGTGGCCCAGGATGTTCTTGCTGCTGT CGAAGCCCTGTGGAGGTGGCCGAGGATGTTCTTGCTGCTGT < 41bp 0.476304168635129 0.777130025991744 0.4834271 0.87570286 prediction 0.554260051983487 Functional Gain - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21094307 chr17:21094308 nonsynonymous SNV 0.646 0 22 hm5C_associated_SNPs_104123 0 0 1 0 1 Endoplasmic reticulum 0.500231644271527 0.500231643912783 0.75140572 0 hm5C_site_57268 DeepMRMD:0.75140572;iRNA_m5C:0 57269 chr16 681374 681374 1 + C A UCEC 681370 + 681350 681390 41 TGCCCCAACCAGCTCAGCCCCAACCTGTGGGTGGACGCCCA TGCCCCAACCAGCTCAGCCCCAACATGTGGGTGGACGCCCA < 41bp 0.381648270833368 0.777121785556635 0.06602934 0.1537435 prediction 0.55424357111327 Functional Gain - WFIKKN1 ENSG00000127578 CDS Human protein_coding chr16:681370 chr16:681374 nonsynonymous SNV 0.990 4 25 hm5C_associated_SNPs_104124 0 0 1 0 1 exosome 0.500231643921093 0.500234574057943 0 5.86027370030884e-06 hm5C_site_57269 DeepMRMD:0;iRNA_m5C:5.86027370030884e-06 57270 chr17 39383275 39383275 1 + C G GBM 39383274 + 39383254 39383294 41 CAGAAGAACCTGCTACTACCCCACGACTGTCTGCCTGCCTG CAGAAGAACCTGCTACTACCCGACGACTGTCTGCCTGCCTG < 41bp 0.54265921286958 0.819772556315282 0.46511838 0.86962235 prediction 0.554226686891405 Functional Gain - KRTAP9-2 ENSG00000239886 CDS Human protein_coding chr17:39383274 chr17:39383275 synonymous SNV . 0 22 hm5C_associated_SNPs_104125 0 0 0 0 0 unknown 0.500231643921106 0.500231643824039 0.7392447 0 hm5C_site_57270 DeepMRMD:0.7392447;iRNA_m5C:0 57271 chr13 46287426 46287426 1 + C A HNSC 46287422 + 46287402 46287442 41 GCCGCAGGATGGCGAGCCAGCACTCCTATCCACTGAACCGC GCCGCAGGATGGCGAGCCAGCACTACTATCCACTGAACCGC < 41bp 0.374323187590387 0.777111962838092 0.8648762 0.6360606 prediction 0.554223925676184 Functional Gain - SPERT ENSG00000174015 CDS Human protein_coding chr13:46287422 chr13:46287426 nonsynonymous SNV 0.986 4 25 hm5C_associated_SNPs_104126 0 0 0 0 0 exosome 0.500231643917177 0.500231643921092 0 7.8301809480763e-12 hm5C_site_57271 DeepMRMD:0;iRNA_m5C:7.8301809480763e-12 57272 chr19 48908574 48908574 1 + C G LUAD 48908570 + 48908550 48908590 41 CTGAGCTCGGCCACGACTGTCGCGCCCAGAACCGCACCCAC CTGAGCTCGGCCACGACTGTCGCGGCCAGAACCGCACCCAC < 41bp 0.499215400823148 0.777105519639839 0.3514191 0.89980525 prediction 0.554211039279679 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48908570 chr19:48908574 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_104127 0 0 0 0 1 chromatin 0.50023164392132 0.500231643891748 0.7996105 0 hm5C_site_57272 DeepMRMD:0.7996105;iRNA_m5C:0 57273 chr15 42114174 42114174 1 + T A LUSC 42114170 + 42114150 42114190 41 GGAATCCTGACAGTGAGTTCCAAGTGCAGGCTCCAGCCCGG GGAATCCTGACAGTGAGTTCCAAGAGCAGGCTCCAGCCCGG < 41bp 0.479599903854442 0.777089006938898 0.22152701 0.3136003 prediction 0.554178013877795 Functional Gain - MAPKBP1 ENSG00000137802 CDS Human protein_coding chr15:42114170 chr15:42114174 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_104128 0 0 1 0 1 Endoplasmic reticulum 0.500231643357137 0.500231643852773 0 9.91270399097743e-10 hm5C_site_57273 DeepMRMD:0;iRNA_m5C:9.91270399097743e-10 57274 chr3 196315552 196315552 1 + C A rs145168273 196315548 + 196315528 196315568 41 CCTAAACTGGGACAGGATCTCTAACGGACTCATCTTTGTGC CCTAAACTGGGACAGGATCTCTAAAGGACTCATCTTTGTGC < 41bp 0.541869039379307 0.818956931886172 0.047765613 0.21864522 prediction 0.55417578501373 Functional Gain - FBXO45 ENSG00000174013 UTR3 Human protein_coding chr3:196315548 chr3:196315552 . . 0 25 hm5C_associated_SNPs_104129 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_57274 DeepMRMD:0;iRNA_m5C:0 57275 chr14 77844652 77844652 1 + T A LUAD 77844648 + 77844628 77844668 41 AGAGGAGATGCAAAGAAAGGCAACTGAGGAGAAAGGGACAG AGAGGAGATGCAAAGAAAGGCAACAGAGGAGAAAGGGACAG < 41bp 0.521729507282308 0.798816472195187 0.79293036 0.62196416 prediction 0.554173929825759 Functional Gain - SAMD15 ENSG00000100583 CDS Human protein_coding chr14:77844648 chr14:77844652 synonymous SNV . 0 25 hm5C_associated_SNPs_104130 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57275 DeepMRMD:0;iRNA_m5C:0 57276 chr1 175092651 175092651 1 + T A HNSC 175092647 + 175092627 175092667 41 GTACATGGTGCGCTACACCTCTGCTGACGGAGAGACCAGGG GTACATGGTGCGCTACACCTCTGCAGACGGAGAGACCAGGG < 41bp 0.583313269995024 0.8603956043918 0.11981937 0.29660767 prediction 0.554164668793553 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175092647 chr1:175092651 synonymous SNV . 0 25 hm5C_associated_SNPs_104131 0 0 0 0 0 exosome 0.500231644560253 0.500231848343315 0 4.07566125515402e-07 hm5C_site_57276 DeepMRMD:0;iRNA_m5C:4.07566125515402e-07 57277 chr15 65370134 65370134 1 + C G rs184130258 65370133 + 65370113 65370153 41 GGTGGAGTACGCAGTGCGGACCGACGCGTGGCTGCCAGTGG GGTGGAGTACGCAGTGCGGACGGACGCGTGGCTGCCAGTGG < 41bp 0.534100717472135 0.811180611418843 0.13281482 0.44977167 prediction 0.554159787893416 Functional Gain - KBTBD13 ENSG00000234438 CDS Human protein_coding chr15:65370133 chr15:65370134 synonymous SNV . 0 22 hm5C_associated_SNPs_104132 1 0 0 0 0 unknown 0.500231643831779 0.500231643929865 0 1.96171523469957e-10 hm5C_site_57277 DeepMRMD:0;iRNA_m5C:1.96171523469957e-10 Nemaline Myopathy, Dominant Nemaline Myopathy, Dominant 57278 chr2 105858688 105858688 1 + C A PRAD 105858684 + 105858664 105858704 41 TTTGTCCTGGAGGGCGTGGCCATCCTGCTCATCATCAGCGT TTTGTCCTGGAGGGCGTGGCCATCATGCTCATCATCAGCGT < 41bp 0.384364360930898 0.777070617666438 0.18661451 0.20459262 prediction 0.554141235332876 Functional Gain - GPR45 ENSG00000135973 CDS Human protein_coding chr2:105858684 chr2:105858688 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104133 0 0 1 0 0 unknown 0.500231644345789 0.500231005205911 0 0 hm5C_site_57278 DeepMRMD:0;iRNA_m5C:0 57279 chr19 50168913 50168913 1 + G C rs151315907 50168917 - 50168897 50168937 41 AAGACAGGGGTGGGTTCCAGCTGCCCGCACGCCCCGACCTT AAGACAGGGGTGGGTTCCAGCTGCGCGCACGCCCCGACCTT < 41bp 0.492525530976324 0.777070333108856 0.074766815 0.15067169 prediction 0.554140666217711 Functional Gain - BCL2L12;IRF3 ENSG00000126453;ENSG00000126456 UTR5 Human other chr19:50168917 chr19:50168913 . . 0 25 hm5C_associated_SNPs_104134 0 0 1 0 1 unknown 0.500231643921158 0.50023164392109 0 0 hm5C_site_57279 DeepMRMD:0;iRNA_m5C:0 57280 chr12 19282753 19282753 1 + T G HNSC 19282751 + 19282731 19282771 41 GACATGGCGGCGGATCTGAACCTGGAGTGGATCTCCCTGCC GACATGGCGGCGGATCTGAACCGGGAGTGGATCTCCCTGCC < 41bp 0.453407764636001 0.777059964919356 0.79713786 0.9096582 prediction 0.554119929838711 Functional Gain - PLEKHA5 ENSG00000052126 CDS Human protein_coding chr12:19282751 chr12:19282753 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_104135 0 0 1 0 1 Nucleus 0.500231625043501 0.5002316511254 0.22504068 5.21637968375899e-08 hm5C_site_57280 DeepMRMD:0.22504068;iRNA_m5C:5.21637968375899e-08 57281 chr8 22864373 22864373 1 + A T rs147473485 22864377 - 22864357 22864397 41 GTGGCGGCGGGAGATGAGTGCAGCTCGGATGGCGTTGTCAA GTGGCGGCGGGAGATGAGTGCAGCACGGATGGCGTTGTCAA < 41bp 0.482578477673518 0.777058741834891 0.2622736 0.17651853 prediction 0.554117483669782 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22864377 chr8:22864373 synonymous SNV . 0 25 hm5C_associated_SNPs_104136 0 0 0 0 0 cytosol 0.500230777502014 0.500233244045034 0 4.93308604010423e-06 hm5C_site_57281 DeepMRMD:0;iRNA_m5C:4.93308604010423e-06 57282 chr11 119044339 119044339 1 + C A LUSC 119044335 + 119044315 119044355 41 CCCTGATGAGCTACTTCGCCCACCCGCGGAGCTGGCCCTGG CCCTGATGAGCTACTTCGCCCACCAGCGGAGCTGGCCCTGG < 41bp 0.362587031765269 0.777053987994888 0.070976466 0.16925523 prediction 0.554107975989776 Functional Gain - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119044335 chr11:119044339 synonymous SNV . 0 25 hm5C_associated_SNPs_104137 0 0 0 0 0 exosome 0.500231643772744 0.500231643921092 0 2.96696445190037e-10 hm5C_site_57282 DeepMRMD:0;iRNA_m5C:2.96696445190037e-10 57283 chr19 36205655 36205655 1 + C G LUAD 36205654 + 36205634 36205674 41 GGGAGCCAGGAGTTCCCCGCCCACAGCCTGGTGCTAGCAGG GGGAGCCAGGAGTTCCCCGCCGACAGCCTGGTGCTAGCAGG < 41bp 0.552342477788156 0.829394816721743 0.14406589 0.37382898 prediction 0.554104677867174 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36205654 chr19:36205655 nonsynonymous SNV 0.827 4 22 hm5C_associated_SNPs_104138 0 0 0 3 0 nucleus 0.500231643939556 0.500231644998435 0 2.11775796898905e-09 hm5C_site_57283 DeepMRMD:0;iRNA_m5C:2.11775796898905e-09 57284 chr5 76249945 76249945 1 + C G rs34761141 76249944 + 76249924 76249964 41 AGCCTTCTTCATCAGCGAGCCCGAGGAGTTCATTACCATCC AGCCTTCTTCATCAGCGAGCCGGAGGAGTTCATTACCATCC < 41bp 0.463153584984409 0.777045056836249 0.20637786 0.88686585 prediction 0.554090113672499 Functional Gain - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249944 chr5:76249945 synonymous SNV . 0 22 hm5C_associated_SNPs_104139 0 0 0 0 1 Cytosol 0.500231675357923 0.500231643921093 0.7737317 0 hm5C_site_57284 DeepMRMD:0.7737317;iRNA_m5C:0 57285 chr1 248058983 248058983 1 + T G rs148037186 248058981 + 248058961 248059001 41 AGGATCCTCTTTGTGGTCATCCTGATCGCGTACCTCCTGAC AGGATCCTCTTTGTGGTCATCCGGATCGCGTACCTCCTGAC < 41bp 0.440321392474182 0.777044783113198 0.38068056 0.891438 prediction 0.554089566226396 Functional Gain - OR2W3 ENSG00000238243 CDS Human protein_coding chr1:248058981 chr1:248058983 nonsynonymous SNV 0.019 3 23 hm5C_associated_SNPs_104140 0 0 0 0 0 exosome 0.500231643920994 0.500231643844366 0.782876 0 hm5C_site_57285 DeepMRMD:0.782876;iRNA_m5C:0 57286 chr5 82373342 82373342 1 + C A rs113843419 82373338 + 82373318 82373358 41 GGGATTTAGATCACGTCCCGCAGGCCGGCGGAAGTAGCTGA GGGATTTAGATCACGTCCCGCAGGACGGCGGAAGTAGCTGA < 41bp 0.428944583696973 0.777033355923267 0.32065713 0.36952168 prediction 0.554066711846534 Functional Gain - XRCC4 ENSG00000152422 UTR5 Human protein_coding chr5:82373338 chr5:82373342 . . 0 25 hm5C_associated_SNPs_104141 0 0 0 0 1 Ribosome 0.500231643918229 0.500231622750843 0 0 hm5C_site_57286 DeepMRMD:0;iRNA_m5C:0 57287 chr9 135930675 135930675 1 + C G rs145199698 135930671 + 135930651 135930691 41 TTCCCACATTCAGGCTCCCGCAAGCCGCTCCACAGCCCTGG TTCCCACATTCAGGCTCCCGCAAGGCGCTCCACAGCCCTGG < 41bp 0.518006735486276 0.795023134575099 0.566676 0.8324714 prediction 0.554032798177647 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135930671 chr9:135930675 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_104142 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.5315908 0 hm5C_site_57287 DeepMRMD:0.5315908;iRNA_m5C:0 57288 chr19 19166101 19166101 1 + C G rs199554736 19166097 + 19166077 19166117 41 CTCGTGAAGCAAGTGCTGAGCACCCTGCGAGCCATCGCAGG CTCGTGAAGCAAGTGCTGAGCACCGTGCGAGCCATCGCAGG < 41bp 0.495864830549316 0.7770009978068 0.049223393 0.15654638 prediction 0.5540019956136 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166097 chr19:19166101 nonsynonymous SNV 0.674 3 25 hm5C_associated_SNPs_104143 0 0 1 0 1 Ribosome 0.500231643922252 0.500231643961268 0 7.8032469374989e-11 hm5C_site_57288 DeepMRMD:0;iRNA_m5C:7.8032469374989e-11 57289 chr18 13826139 13826139 1 + C G LUAD 13826138 + 13826118 13826158 41 TGACTCCATGATCTGCATTTCCGTGGTGGCATCCATGTGCA TGACTCCATGATCTGCATTTCGGTGGTGGCATCCATGTGCA < 41bp 0.468745471042754 0.776998802016714 0.54418325 0.3895474 prediction 0.553997604033427 Functional Gain - MC5R ENSG00000176136 CDS Human protein_coding chr18:13826138 chr18:13826139 synonymous SNV . 0 22 hm5C_associated_SNPs_104144 0 0 0 0 0 unknown 0.500253893911221 0.500231643702373 0 0 hm5C_site_57289 DeepMRMD:0;iRNA_m5C:0 57290 chr2 234237227 234237227 1 + C A OV 234237223 + 234237203 234237243 41 TGGCAGTTCTTCATGTCTGACAAGCCCCTGCACCTTGCGGT TGGCAGTTCTTCATGTCTGACAAGACCCTGCACCTTGCGGT < 41bp 0.373724643836378 0.776995723480586 0.2383421 0.2737006 prediction 0.553991446961171 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234237223 chr2:234237227 nonsynonymous SNV 0.981 3 25 hm5C_associated_SNPs_104145 0 0 0 0 1 Endoplasmic reticulum 0.50023164346962 0.500231645051505 0 3.16377146702962e-09 hm5C_site_57290 DeepMRMD:0;iRNA_m5C:3.16377146702962e-09 57291 chr9 139929869 139929869 1 + C G rs549580151 139929865 + 139929845 139929885 41 ATGCGTGTCTCGAGCGCTCCCTGGCGGCATGCTGCAAAGCT ATGCGTGTCTCGAGCGCTCCCTGGGGGCATGCTGCAAAGCT < 41bp 0.51189071156635 0.788869775537361 0.10844144 0.7378285 prediction 0.553958127942021 Functional Gain - C9orf139 ENSG00000180539 UTR3 Human antisense chr9:139929865 chr9:139929869 . . 0 25 hm5C_associated_SNPs_104146 0 0 0 0 0 unknown 0.500231642452507 0.500231643845357 0.475657 2.78570078116047e-09 hm5C_site_57291 DeepMRMD:0.475657;iRNA_m5C:2.78570078116047e-09 57292 chr5 140724206 140724206 1 + T G BLCA 140724204 + 140724184 140724224 41 TGCTGGAGCGGGCCCTGGACCGTGAGAAAAAAGAAATTCAC TGCTGGAGCGGGCCCTGGACCGGGAGAAAAAAGAAATTCAC < 41bp 0.586077920161925 0.863053531045217 0.39625758 0.9064435 prediction 0.553951221766583 Functional Gain - PCDHGA3 ENSG00000254245 CDS Human protein_coding chr5:140724204 chr5:140724206 synonymous SNV . 0 23 hm5C_associated_SNPs_104147 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.812887 0 hm5C_site_57292 DeepMRMD:0.812887;iRNA_m5C:0 57293 chr16 8740517 8740517 1 + C G rs116983616 8740513 + 8740493 8740533 41 TGAGAAGGAAGAGGCAGGAGCTGGCGCCAGGAATGGACTGG TGAGAAGGAAGAGGCAGGAGCTGGGGCCAGGAATGGACTGG < 41bp 0.499181248472499 0.776953418998214 0.767953 0.8577992 prediction 0.553906837996429 Functional Gain - METTL22 ENSG00000067365 downstream Human protein_coding chr16:8740513 chr16:8740517 . . 0 25 hm5C_associated_SNPs_104148 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.1796924 0 hm5C_site_57293 DeepMRMD:0.1796924;iRNA_m5C:0 57294 chr2 178407946 178407946 1 + C A rs148879448 178407942 + 178407922 178407962 41 TCTTTCTGGATGTTTGCTCACAGGCTCCCTGAGGAGCAGAA TCTTTCTGGATGTTTGCTCACAGGATCCCTGAGGAGCAGAA < 41bp 0.539761445190826 0.81671085427147 0.26112306 0.47349888 prediction 0.553898818161287 Functional Gain - AGPS ENSG00000018510 UTR3 Human protein_coding chr2:178407942 chr2:178407946 . . 0 25 hm5C_associated_SNPs_104149 1 0 1 0 0 Nucleus 0.500231645462858 0.50023165547731 0 2.00289043128521e-08 hm5C_site_57294 DeepMRMD:0;iRNA_m5C:2.00289043128521e-08 Rhizomelic chondrodysplasia punctata Rhizomelic chondrodysplasia punctata 57295 chr6 168228529 168228529 1 + T G rs6900911 168228526 + 168228506 168228546 41 CGGGGCCGCGAGGAAGGGCCCTCTGCGGCGGCCTCTGCCCG CGGGGCCGCGAGGAAGGGCCCTCGGCGGCGGCCTCTGCCCG < 41bp 0.481764078465768 0.776936064036653 0.47704566 0.7498887 prediction 0.553872128073306 Functional Gain - AFDN ENSG00000130396 intronic Human protein_coding chr6:168228526 chr6:168228529 . . 0 24 hm5C_associated_SNPs_104150 0 0 1 0 1 unknown 0.500231378289312 0.500254208788041 0.4997774 4.56609974583966e-05 hm5C_site_57295 DeepMRMD:0.4997774;iRNA_m5C:4.56609974583966e-05 57296 chr17 3324548 3324548 1 + T A rs200359863 3324544 + 3324524 3324564 41 CTTCATCAGTGTGTCCTATGCCCATGTGGTAGCTGCTGTGC CTTCATCAGTGTGTCCTATGCCCAAGTGGTAGCTGCTGTGC < 41bp 0.48209108860496 0.776917655083985 0.116882116 0.21608487 prediction 0.55383531016797 Functional Gain - OR3A3 ENSG00000159961 CDS Human protein_coding chr17:3324544 chr17:3324548 nonsynonymous SNV 0.020 1 25 hm5C_associated_SNPs_104151 0 0 0 0 0 exosome 0.500231644011137 0.500231643921092 0 0 hm5C_site_57296 DeepMRMD:0;iRNA_m5C:0 57297 chr6 20402810 20402810 1 + C A rs189058327 20402806 + 20402786 20402826 41 GCAGAGCCGGGCTGCTGCAGCAGCCACCAGCGCTGGGACGC GCAGAGCCGGGCTGCTGCAGCAGCAACCAGCGCTGGGACGC < 41bp 0.612108801339051 0.889021928081823 0.4703413 0.5389384 prediction 0.553826253485544 Functional Gain - E2F3 ENSG00000112242 CDS Human protein_coding chr6:20402806 chr6:20402810 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_104152 0 0 0 0 1 Cytosol 0.500231643896115 0.500231651957828 0.0778768000000001 1.61234261497611e-08 hm5C_site_57297 DeepMRMD:0.0778768000000001;iRNA_m5C:1.61234261497611e-08 57298 chr22 50962103 50962103 1 + C G rs200605042 50962099 + 50962079 50962119 41 CACACTGTCTGAGATCTGCTCAGCCGATCTGCTCCGGCCGT CACACTGTCTGAGATCTGCTCAGCGGATCTGCTCCGGCCGT < 41bp 0.494881415246474 0.776912089188538 0.5038174 0.8571264 prediction 0.553824178377077 Functional Gain - SCO2 ENSG00000130489 CDS Human protein_coding chr22:50962099 chr22:50962103 synonymous SNV . 0 25 hm5C_associated_SNPs_104153 2 0 1 0 0 Ribosome 0.500231643921206 0.500231643921094 0.706618 0 hm5C_site_57298 DeepMRMD:0.706618;iRNA_m5C:0 Fatal Infantile Cardioencephalomyopathy Fatal Infantile Cardioencephalomyopathy 57299 chr12 119632103 119632103 1 + C G rs13378054 119632102 + 119632082 119632122 41 CATGGTTTGGTTAATGAAACCCAGTAGCTAACCCCACTGTG CATGGTTTGGTTAATGAAACCGAGTAGCTAACCCCACTGTG < 41bp 0.512557287810657 0.789468080086801 0.1225602 0.55299056 prediction 0.553821584552286 Functional Gain - HSPB8 ENSG00000152137 UTR3 Human protein_coding chr12:119632102 chr12:119632103 . . 0 22 hm5C_associated_SNPs_104154 2 0 0 1 0 exosome 0.500231614558147 0.500231660648747 0.10598112 9.21812008947143e-08 hm5C_site_57299 DeepMRMD:0.10598112;iRNA_m5C:9.21812008947143e-08 Charcot-Marie-Tooth, Type 2 Charcot-Marie-Tooth, Type 2 57300 chr1 227954742 227954742 1 + C G rs34209229 227954738 + 227954718 227954758 41 CACAGCACTGCACCTGCAGACAAGCCTGCCAGCCCTTTCTG CACAGCACTGCACCTGCAGACAAGGCTGCCAGCCCTTTCTG < 41bp 0.498330634828437 0.776895225077798 0.2482959 0.79091513 prediction 0.553790450155595 Functional Gain - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227954738 chr1:227954742 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104155 0 0 1 0 2 Ribosome 0.500231643603153 0.500231643926413 0.58183026 6.46521058911276e-10 hm5C_site_57300 DeepMRMD:0.58183026;iRNA_m5C:6.46521058911276e-10 57301 chr16 69373944 69373944 1 + C G LUSC 69373940 + 69373920 69373960 41 ATCTTCAACTGCTGGTGGACCGGCCCGATGGCACCTACTGT ATCTTCAACTGCTGGTGGACCGGCGCGATGGCACCTACTGT < 41bp 0.520824423929597 0.797710042828076 0.16710836 0.54294896 prediction 0.553771237796959 Functional Gain - NIP7 ENSG00000132603 CDS Human protein_coding chr16:69373940 chr16:69373944 nonsynonymous SNV 0.847 2 25 hm5C_associated_SNPs_104156 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.0858979200000001 0 hm5C_site_57301 DeepMRMD:0.0858979200000001;iRNA_m5C:0 57302 chr1 44443709 44443709 1 + C A rs56842927 44443705 + 44443685 44443725 41 ATGTGTGGGTGGGGCCGTGCCTCACTTTTATTTATTGCTGG ATGTGTGGGTGGGGCCGTGCCTCAATTTTATTTATTGCTGG < 41bp 0.405941071628593 0.776877222335683 0.11501053 0.79804677 prediction 0.553754444671366 Functional Gain - ATP6V0B ENSG00000117410 UTR3 Human protein_coding chr1:44443705 chr1:44443709 . . 0 25 hm5C_associated_SNPs_104157 0 0 1 1 1 Ribosome 0.500231643921087 0.500231643921092 0.59609354 1.04360964314765e-14 hm5C_site_57302 DeepMRMD:0.59609354;iRNA_m5C:1.04360964314765e-14 57303 chr12 124081212 124081212 1 + T A BRCA 124081208 + 124081188 124081228 41 CCTTCTTTGAAGCTCTTGTTCTAGTTGCCATGACATTGGGA CCTTCTTTGAAGCTCTTGTTCTAGATGCCATGACATTGGGA < 41bp 0.555076841374393 0.831949756279509 0.12952492 0.100853354 prediction 0.553745829810232 Functional Gain - TMED2 ENSG00000086598 CDS Human protein_coding chr12:124081208 chr12:124081212 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104158 0 0 1 0 1 Ribosome 0.500231647313545 0.500231645546421 0 0 hm5C_site_57303 DeepMRMD:0;iRNA_m5C:0 57304 chr5 34826568 34826568 1 + T A UCEC 34826564 + 34826544 34826584 41 CGCTGCAGCAGCAAGTCAAACAGCTCCAGAACCAGCTGGCG CGCTGCAGCAGCAAGTCAAACAGCACCAGAACCAGCTGGCG < 41bp 0.456117323061224 0.776864846330235 0.10239875 0.27318302 prediction 0.55372969266047 Functional Gain - RAI14 ENSG00000039560 CDS Human protein_coding chr5:34826564 chr5:34826568 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_104159 0 0 0 0 1 Cytosol 0.500231643921104 0.500231643921092 0 0 hm5C_site_57304 DeepMRMD:0;iRNA_m5C:0 57305 chrX 49846431 49846431 1 + T G LGG 49846429 + 49846409 49846449 41 AAAGAGGGCCCTCTAGTGCACGTGGCTTGCTGCTGTGGGAA AAAGAGGGCCCTCTAGTGCACGGGGCTTGCTGCTGTGGGAA < 41bp 0.429609825007113 0.776863179634918 0.69018275 0.9289743 prediction 0.553726359269835 Functional Gain - CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49846429 chrX:49846431 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_104160 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0.4775831 0 hm5C_site_57305 DeepMRMD:0.4775831;iRNA_m5C:0 57306 chr7 148484096 148484096 1 + T A GBM 148484092 + 148484072 148484112 41 CTTTGCCAGATGGTTGTCTTCAAGTACATAGAAGACAAAGA CTTTGCCAGATGGTTGTCTTCAAGAACATAGAAGACAAAGA < 41bp 0.464219932081495 0.776859795065562 0.2808712 0.24808979 prediction 0.553719590131124 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148484092 chr7:148484096 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104161 0 0 1 0 1 Nucleus 0.500232472320177 0.50023169344623 0 0 hm5C_site_57306 DeepMRMD:0;iRNA_m5C:0 57307 chr10 75552442 75552442 1 + C G SKCM 75552441 + 75552421 75552461 41 TGGCAATGGGCTTCCCAAAACCAAAGAGGCAGCCCCTGCAG TGGCAATGGGCTTCCCAAAACGAAAGAGGCAGCCCCTGCAG < 41bp 0.541521632991553 0.818370774480405 0.11104712 0.32172436 prediction 0.553698282977704 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75552441 chr10:75552442 synonymous SNV . 0 22 hm5C_associated_SNPs_104162 0 0 0 1 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_57307 DeepMRMD:0;iRNA_m5C:0 57308 chrX 101971960 101971960 1 + C G rs112000579 101971959 + 101971939 101971979 41 ACTGATTGCCAACTATATGTCCGGGTTTCTCTCCTTATTAA ACTGATTGCCAACTATATGTCGGGGTTTCTCTCCTTATTAA < 41bp 0.533368912022444 0.810204262062614 0.8650589 0.9377133 prediction 0.553670700080341 Functional Gain - ARMCX5-GPRASP2;GPRASP2 ENSG00000158301 CDS Human protein_coding chrX:101971959 chrX:101971960 synonymous SNV . 0 22 hm5C_associated_SNPs_104163 0 0 0 0 0 unknown 0.500231643920843 0.500231643906778 0.1453088 0 hm5C_site_57308 DeepMRMD:0.1453088;iRNA_m5C:0 57309 chr16 332515 332515 1 + C A LUAD 332511 + 332491 332531 41 CTCAAGTGTCTGCACCACACCTACCGCCGGGGCCTGCGCGG CTCAAGTGTCTGCACCACACCTACAGCCGGGGCCTGCGCGG < 41bp 0.397326425906586 0.776835019333274 0.07508871 0.25982106 prediction 0.553670038666548 Functional Gain - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:332511 chr16:332515 nonsynonymous SNV 0.974 4 25 hm5C_associated_SNPs_104164 0 0 0 0 2 exosome 0.500231648634197 0.500231643920977 0 0 hm5C_site_57309 DeepMRMD:0;iRNA_m5C:0 57310 chr7 148485727 148485727 1 + C A GBM 148485723 + 148485703 148485743 41 GGCGTGAGCAAAGATCTGAACGAGCAATTCAAAAAGCACTT GGCGTGAGCAAAGATCTGAACGAGAAATTCAAAAAGCACTT < 41bp 0.369103447442005 0.77681894592282 0.26663372 0.25612694 prediction 0.553637891845641 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148485723 chr7:148485727 nonsynonymous SNV 0.986 1 25 hm5C_associated_SNPs_104165 0 0 1 0 2 Nucleus 0.500231643144449 0.500231643920975 0 1.55305168725306e-09 hm5C_site_57310 DeepMRMD:0;iRNA_m5C:1.55305168725306e-09 57311 chr21 46047799 46047799 1 + T G ACC 46047796 + 46047776 46047816 41 TCTGTGTCCCTCCTCTGCCGCCCTGTGTGCAGGCCCGCCTG TCTGTGTCCCTCCTCTGCCGCCCGGTGTGCAGGCCCGCCTG < 41bp 0.392518305855136 0.776816671135088 0.19271705 0.8309354 prediction 0.553633342270176 Functional Gain - KRTAP10-9 ENSG00000221837 CDS Human protein_coding chr21:46047796 chr21:46047799 synonymous SNV . 0 24 hm5C_associated_SNPs_104166 0 0 0 0 0 unknown 0.500231643921127 0.500231643921092 0.6618708 0 hm5C_site_57311 DeepMRMD:0.6618708;iRNA_m5C:0 57312 chr6 27806651 27806651 1 + T G PRAD 27806649 + 27806629 27806669 41 AACTCCTTCGTCAATGACATCTTCGAGCGCATCGCCGGCGA AACTCCTTCGTCAATGACATCTGCGAGCGCATCGCCGGCGA < 41bp 0.575516506034897 0.852332559586034 0.09344411 0.1217348 prediction 0.553632107102273 Functional Gain - HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806649 chr6:27806651 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_104167 0 0 1 0 0 Ribosome 0.500231643914965 0.500231638411037 0 0 hm5C_site_57312 DeepMRMD:0;iRNA_m5C:0 57313 chr20 18568586 18568586 1 + C G rs571807436 18568585 + 18568565 18568605 41 CGACGTGGGGTGGGTAGCAGCCGACCGAGTCGGACCGGCCA CGACGTGGGGTGGGTAGCAGCGGACCGAGTCGGACCGGCCA < 41bp 0.485849313291385 0.776812006046639 0.44227558 0.8634254 prediction 0.553624012093279 Functional Gain - DTD1 ENSG00000125821 UTR5 Human protein_coding chr20:18568585 chr20:18568586 . . 0 22 hm5C_associated_SNPs_104168 0 0 0 0 0 Ribosome 0.500231602239845 0.500231265431407 0.7268508 0 hm5C_site_57313 DeepMRMD:0.7268508;iRNA_m5C:0 57314 chr4 129770210 129770210 1 + C A THCA 129770206 + 129770186 129770226 41 CGTGTCATCAGGCTCTGAGCCTCCCGAGTTGGGCTATGTGG CGTGTCATCAGGCTCTGAGCCTCCAGAGTTGGGCTATGTGG < 41bp 0.3425531467839 0.776809429301871 0.19856235 0.95674324 prediction 0.553618858603741 Functional Gain - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129770206 chr4:129770210 synonymous SNV . 0 25 hm5C_associated_SNPs_104169 0 0 1 0 1 Ribosome 0.50023135994724 0.500231643921302 0.91348648 5.67948124752249e-07 hm5C_site_57314 DeepMRMD:0.91348648;iRNA_m5C:5.67948124752249e-07 57315 chr20 18507054 18507054 1 + T A UCEC 18507050 + 18507030 18507070 41 ACACAGGAGCCAGGATCATGCTGTTTACTGGAGGTCCCCCT ACACAGGAGCCAGGATCATGCTGTATACTGGAGGTCCCCCT < 41bp 0.449590502069028 0.776802375118445 0.13876459 0.20806018 prediction 0.553604750236891 Functional Gain - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18507050 chr20:18507054 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_104170 0 0 1 0 1 Cytosol 0.500231643921093 0.500231643921093 0 0 hm5C_site_57315 DeepMRMD:0;iRNA_m5C:0 57316 chr19 11135020 11135020 1 + T G STAD 11135018 + 11134998 11135038 41 CCCCTGCAGGTGGAGTACGTCATCAAGTGCGACATGTCTGC CCCCTGCAGGTGGAGTACGTCAGCAAGTGCGACATGTCTGC < 41bp 0.458418332317131 0.776798935697228 0.12779608 0.80219924 prediction 0.553597871394457 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11135018 chr19:11135020 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_104171 0 0 1 0 2 Nucleus 0.500231758738108 0.500266940620419 0.60439848 7.03637646226607e-05 hm5C_site_57316 DeepMRMD:0.60439848;iRNA_m5C:7.03637646226607e-05 57317 chr5 133481955 133481955 1 + C G rs141612090 133481954 + 133481934 133481974 41 CGGTACTTACCCGGAGAAGGCCGCTGCCCCAGCCCCGTTCC CGGTACTTACCCGGAGAAGGCGGCTGCCCCAGCCCCGTTCC < 41bp 0.482560550708332 0.776793790971931 0.16697294 0.896162 prediction 0.553587581943863 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133481954 chr5:133481955 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_104172 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.792324 0 hm5C_site_57317 DeepMRMD:0.792324;iRNA_m5C:0 57318 chr6 126080738 126080738 1 + C G LUAD 126080734 + 126080714 126080754 41 CTCTGCCACCGTCCACGCCGCAGCCGCAGCAGCCACCGCGG CTCTGCCACCGTCCACGCCGCAGCGGCAGCAGCCACCGCGG < 41bp 0.503407232472448 0.78019191130565 0.10589415 0.22289547 prediction 0.553569357666404 Functional Gain - HEY2 ENSG00000135547 CDS Human protein_coding chr6:126080734 chr6:126080738 synonymous SNV . 0 25 hm5C_associated_SNPs_104173 0 0 0 0 0 exosome 0.500231644577793 0.50023164392113 0 0 hm5C_site_57318 DeepMRMD:0;iRNA_m5C:0 57319 chr16 67208108 67208108 1 + C A UCEC 67208104 + 67208084 67208124 41 GCAGGAGCGGCCGTCAGAGACTATCGACCGCGAGCGGAAAC GCAGGAGCGGCCGTCAGAGACTATAGACCGCGAGCGGAAAC < 41bp 0.368235396957994 0.776774459570747 0.0135730505 0.07729173 prediction 0.553548919141494 Functional Gain - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208104 chr16:67208108 synonymous SNV . 0 25 hm5C_associated_SNPs_104174 0 0 0 0 1 Ribosome 0.500231643920961 0.500231643921093 0 2.62234678416462e-13 hm5C_site_57319 DeepMRMD:0;iRNA_m5C:2.62234678416462e-13 57320 chr19 35832701 35832701 1 + C G SKCM 35832700 + 35832680 35832720 41 GTGAGAGCGACGCCAACCCTCCCGTCTCCCACTACACCTGG GTGAGAGCGACGCCAACCCTCGCGTCTCCCACTACACCTGG < 41bp 0.458078520672004 0.776768982986304 0.12263489 0.35232827 prediction 0.553537965972609 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35832700 chr19:35832701 nonsynonymous SNV 0.438 2 22 hm5C_associated_SNPs_104175 0 0 0 0 1 Endoplasmic reticulum 0.500231644028337 0.500231643933375 0 0 hm5C_site_57320 DeepMRMD:0;iRNA_m5C:0 57321 chr16 88052077 88052077 1 + C G rs76505268 88052076 + 88052056 88052096 41 GCTGGGCGACGAGAACAACCCCGAGATGCGGGTACGCTGCG GCTGGGCGACGAGAACAACCCGGAGATGCGGGTACGCTGCG < 41bp 0.466051559406307 0.776760176130201 0.52109563 0.93040264 prediction 0.553520352260402 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88052076 chr16:88052077 synonymous SNV . 0 22 hm5C_associated_SNPs_104176 0 0 1 0 1 Cytosol 0.500231643876682 0.500231643882986 0.81861402 1.26092469798778e-11 hm5C_site_57321 DeepMRMD:0.81861402;iRNA_m5C:1.26092469798778e-11 57322 chr8 103572944 103572944 1 + T G ESCA 103572941 + 103572921 103572961 41 TACTCCTATGGGCTCGGCAGCTGTGTCAAGATCGAGTCTCC TACTCCTATGGGCTCGGCAGCTGGGTCAAGATCGAGTCTCC < 41bp 0.626298527489995 0.90303495639308 0.057684362 0.5600898 prediction 0.55347285780617 Functional Gain - ODF1 ENSG00000155087 CDS Human protein_coding chr8:103572941 chr8:103572944 nonsynonymous SNV 0.830 5 24 hm5C_associated_SNPs_104177 0 0 0 0 0 unknown 0.500231643921093 0.500231643921093 0.1201796 0 hm5C_site_57322 DeepMRMD:0.1201796;iRNA_m5C:0 57323 chr19 19606655 19606655 1 + C A UCEC 19606651 + 19606631 19606671 41 CTCGAAGCTGGGGCCACAGGCGAGCTCACAGGTCGTCATGC CTCGAAGCTGGGGCCACAGGCGAGATCACAGGTCGTCATGC < 41bp 0.629511795472127 0.906242567453911 0.9103617 0.89560187 prediction 0.55346154396357 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606651 chr19:19606655 nonsynonymous SNV 0.506 0 25 hm5C_associated_SNPs_104178 0 0 1 0 2 Cytosol 0.500231643810036 0.500231637398048 0 0 hm5C_site_57323 DeepMRMD:0;iRNA_m5C:0 57324 chr16 81957190 81957190 1 + C G SKCM 81957189 + 81957169 81957209 41 TCCACAATGTCTCCAAGGAGCCCGGGGGCTGGTAAGGCTGA TCCACAATGTCTCCAAGGAGCGCGGGGGCTGGTAAGGCTGA < 41bp 0.487570840197334 0.776725462742992 0.37877035 0.7396546 prediction 0.553450925485983 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81957189 chr16:81957190 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_104179 0 0 0 0 1 Cytosol 0.50023164392111 0.500231643921093 0.4793092 0 hm5C_site_57324 DeepMRMD:0.4793092;iRNA_m5C:0 57325 chr11 130011950 130011950 1 + T G LIHC 130011948 + 130011928 130011968 41 AGGAAGAGGCAGTATGGCACCATCAGCCACGGGATCGTGGA AGGAAGAGGCAGTATGGCACCAGCAGCCACGGGATCGTGGA < 41bp 0.581271056105164 0.85799019266871 0.042379826 0.18654165 prediction 0.553438273127092 Functional Gain - APLP2 ENSG00000084234 CDS Human protein_coding chr11:130011948 chr11:130011950 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_104180 0 0 1 0 1 Endoplasmic reticulum 0.500273923004238 0.500231643456523 0 0 hm5C_site_57325 DeepMRMD:0;iRNA_m5C:0 57326 chr22 32871363 32871363 1 + C G BLCA 32871359 + 32871339 32871379 41 CCTGGAGAACATGGCCCGGCCTCCCGGGGGCTCTGGTCCCC CCTGGAGAACATGGCCCGGCCTCCGGGGGGCTCTGGTCCCC < 41bp 0.501853613050702 0.778556291164529 0.21782473 0.704597 prediction 0.553405356227654 Functional Gain - FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32871359 chr22:32871363 synonymous SNV . 0 25 hm5C_associated_SNPs_104181 0 0 1 0 1 chromatin 0.500231643917135 0.50023164387607 0.409194 0 hm5C_site_57326 DeepMRMD:0.409194;iRNA_m5C:0 57327 chr1 155532525 155532525 1 + C G rs374122022 155532524 + 155532504 155532544 41 TCGTCCAGTCCCTCACTACCCCTCAGGCCCTGTCAAGCCGG TCGTCCAGTCCCTCACTACCCGTCAGGCCCTGTCAAGCCGG < 41bp 0.529263513611565 0.805946041840867 0.05904901 0.0725691 prediction 0.553365056458604 Functional Gain - ASH1L-AS1 ENSG00000235919 ncRNA_exonic Human antisense chr1:155532524 chr1:155532525 . . 0 22 hm5C_associated_SNPs_104182 0 0 0 0 0 unknown 0.50023164392107 0.500231643866948 0 0 hm5C_site_57327 DeepMRMD:0;iRNA_m5C:0 57328 chr11 4903313 4903313 1 + T A LIHC 4903309 + 4903289 4903329 41 AAGCGGAGACTCCACAAACCCATGTATTATTTCCTCTCCAT AAGCGGAGACTCCACAAACCCATGAATTATTTCCTCTCCAT < 41bp 0.484952425124978 0.776660754141623 0.17647788 0.76625675 prediction 0.553321508283247 Functional Gain - OR51T1 ENSG00000176900 CDS Human protein_coding chr11:4903309 chr11:4903313 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_104183 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0.5325135 0 hm5C_site_57328 DeepMRMD:0.5325135;iRNA_m5C:0 57329 chr12 132237891 132237891 1 + C G STAD 132237890 + 132237870 132237910 41 GACTAGCAGCGGGGCCACCTCCACAACCACCACCACAAGGT GACTAGCAGCGGGGCCACCTCGACAACCACCACCACAAGGT < 41bp 0.557329239258601 0.833984778790577 0.37992057 0.4049937 prediction 0.553311079063952 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132237890 chr12:132237891 synonymous SNV . 0 22 hm5C_associated_SNPs_104184 0 0 1 0 1 Nucleus 0.500231643921775 0.500234967811539 0 6.64777952730233e-06 hm5C_site_57329 DeepMRMD:0;iRNA_m5C:6.64777952730233e-06 57330 chr15 102292813 102292813 1 + T G STAD 102292811 + 102292791 102292831 41 TGCTGTCCAACCTGCACTCGCGTGGGAACGAGAAGACACTC TGCTGTCCAACCTGCACTCGCGGGGGAACGAGAAGACACTC < 41bp 0.567784869498457 0.844436646164457 0.9209788 0.9493953 prediction 0.553303553331999 Functional Gain - LOC100128108;OR4F6 ENSG00000259660 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102292811 chr15:102292813 . . 0 23 hm5C_associated_SNPs_104185 0 0 0 0 0 unknown 0.500230800312549 0.500231630289971 0.0568330000000001 1.65995484491255e-06 hm5C_site_57330 DeepMRMD:0.0568330000000001;iRNA_m5C:1.65995484491255e-06 57331 chr13 28494372 28494372 1 + C A rs192902098 28494368 + 28494348 28494388 41 GCGCCGGAGTTCAGCGCCAGCCCCCCTGCGTGCCTGTACAT GCGCCGGAGTTCAGCGCCAGCCCCACTGCGTGCCTGTACAT < 41bp 0.392344924280294 0.776642311457819 0.0856739 0.091938734 prediction 0.553284622915637 Functional Gain - PDX1 ENSG00000139515 CDS Human protein_coding chr13:28494368 chr13:28494372 nonsynonymous SNV 0.960 5 25 hm5C_associated_SNPs_104186 2 0 0 0 0 exosome 0.500141464417178 0.50023186420066 0 0.000180799566963374 hm5C_site_57331 DeepMRMD:0;iRNA_m5C:0.000180799566963374 Maturity-onset diabetes of the young, type 4 Maturity-onset diabetes of the young, type 4 57332 chr7 6630031 6630031 1 + C A KIRC 6630027 + 6630007 6630047 41 GCTGCAGAGCGCGCCGCTGCCCATCGTGGACAAGGGCCCCG GCTGCAGAGCGCGCCGCTGCCCATAGTGGACAAGGGCCCCG < 41bp 0.388374404101748 0.776637418855271 0.08854982 0.12143892 prediction 0.553274837710543 Functional Gain - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6630027 chr7:6630031 synonymous SNV . 0 25 hm5C_associated_SNPs_104187 0 0 1 0 1 chromatin 0.500231797826584 0.50023095418149 0 0 hm5C_site_57332 DeepMRMD:0;iRNA_m5C:0 57333 chr16 28847439 28847439 1 + C G LUSC 28847438 + 28847418 28847458 41 CTACCCCTACATCGGACACCCCCAAGGTGAGCAGCCTGGCC CTACCCCTACATCGGACACCCGCAAGGTGAGCAGCCTGGCC < 41bp 0.480631763322727 0.776616017993897 0.16354647 0.20589712 prediction 0.553232035987794 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847438 chr16:28847439 synonymous SNV . 0 22 hm5C_associated_SNPs_104188 0 0 1 0 2 Cytosol 0.500231643926564 0.500231643920981 0 0 hm5C_site_57333 DeepMRMD:0;iRNA_m5C:0 57334 chr9 135465539 135465539 1 + C A rs58476421 135465535 + 135465515 135465555 41 AAGGGGCCAAGGGGGCTTGCCCACCCACCCCGACCCCAGCC AAGGGGCCAAGGGGGCTTGCCCACACACCCCGACCCCAGCC < 41bp 0.471755057134311 0.776612947317186 0.102190465 0.14806151 prediction 0.553225894634372 Functional Gain - BARHL1 ENSG00000125492 UTR3 Human protein_coding chr9:135465535 chr9:135465539 . . 0 25 hm5C_associated_SNPs_104189 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_57334 DeepMRMD:0;iRNA_m5C:0 57335 chr5 58147162 58147162 1 + C A ESCA 58147158 + 58147138 58147178 41 AGGAAACTCCTCCTCCACCGCAGCCCAACTGTGCCTGCTAG AGGAAACTCCTCCTCCACCGCAGCACAACTGTGCCTGCTAG < 41bp 0.384236071222908 0.776600536426167 0.21767011 0.17673993 prediction 0.553201072852335 Functional Gain - RAB3C ENSG00000152932 CDS Human protein_coding chr5:58147158 chr5:58147162 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_104190 0 0 0 0 0 Endoplasmic reticulum 0.50023168090943 0.500231643925419 0 0 hm5C_site_57335 DeepMRMD:0;iRNA_m5C:0 57336 chr21 44592283 44592283 1 + C A UCEC 44592279 + 44592259 44592299 41 TGCTCCCTGTCTGCCGATGGCATGCTGACCTTCTGTGGCCC TGCTCCCTGTCTGCCGATGGCATGATGACCTTCTGTGGCCC < 41bp 0.389500019842908 0.776598473152418 0.17057288 0.11909494 prediction 0.553196946304837 Functional Gain - CRYAA;LOC102724652 ENSG00000160202 CDS Human protein_coding chr21:44592279 chr21:44592283 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_104191 0 0 0 0 0 unknown 0.500231644573434 0.500230826731582 0 0 hm5C_site_57336 DeepMRMD:0;iRNA_m5C:0 57337 chr16 80583497 80583497 1 + C A rs11866734 80583493 + 80583473 80583513 41 CGTGATATTGATCCTCAGAACGACCTGACTTTTCTTAGGAT CGTGATATTGATCCTCAGAACGACATGACTTTTCTTAGGAT < 41bp 0.380634412877031 0.776594367761484 0.0687767 0.09531611 prediction 0.553188735522969 Functional Gain - DYNLRB2 ENSG00000168589 CDS Human protein_coding chr16:80583493 chr16:80583497 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_104192 0 0 0 2 1 exosome 0.500231643921092 0.500231643921093 0 6.66133814775094e-16 hm5C_site_57337 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 57338 chr9 139564106 139564106 1 + C G rs114826929 139564102 + 139564082 139564122 41 CCGCAGCCCTGGGCTGGCCCCTGCCAGGCCTCGCTACGCGT CCGCAGCCCTGGGCTGGCCCCTGCGAGGCCTCGCTACGCGT < 41bp 0.508407921113284 0.784995340796755 0.1064513 0.29109323 prediction 0.553174839366942 Functional Gain - EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139564102 chr9:139564106 synonymous SNV . 0 25 hm5C_associated_SNPs_104193 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921091 0 0 hm5C_site_57338 DeepMRMD:0;iRNA_m5C:0 57339 chr7 100389710 100389710 1 + C A LUSC 100389706 + 100389686 100389726 41 GCACCCAGGCCTGTAGGGTGCTGGCAGACCCCCAGGGCCCC GCACCCAGGCCTGTAGGGTGCTGGAAGACCCCCAGGGCCCC < 41bp 0.609501478959794 0.886078570372187 0.4784697 0.38557348 prediction 0.553154182824786 Functional Gain - ZAN ENSG00000146839 CDS Human protein_coding chr7:100389706 chr7:100389710 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_104194 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_57339 DeepMRMD:0;iRNA_m5C:0 57340 chrX 149013355 149013355 1 + C A LUSC 149013351 + 149013331 149013371 41 AAGCACCTCCCCGGACCCAGCTCACCTGGAGTCCCTGTTCC AAGCACCTCCCCGGACCCAGCTCAACTGGAGTCCCTGTTCC < 41bp 0.367087515771504 0.77657654150529 0.15201744 0.19100082 prediction 0.55315308301058 Functional Gain - MAGEA8 ENSG00000156009 CDS Human protein_coding chrX:149013351 chrX:149013355 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104195 0 0 0 0 0 exosome 0.50023164392129 0.500231643921092 0 0 hm5C_site_57340 DeepMRMD:0;iRNA_m5C:0 57341 chr22 31829981 31829981 1 + C G rs115098936 31829977 + 31829957 31829997 41 AAACCTTTCCCTTTTCCCATCTGCCGGACGAACCACAACAG AAACCTTTCCCTTTTCCCATCTGCGGGACGAACCACAACAG < 41bp 0.510738220947282 0.787296392095852 0.17047802 0.265167 prediction 0.55311634229714 Functional Gain - DRG1 ENSG00000185721 UTR3 Human protein_coding chr22:31829977 chr22:31829981 . . 0 25 hm5C_associated_SNPs_104196 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921085 0 0 hm5C_site_57341 DeepMRMD:0;iRNA_m5C:0 57342 chr2 138033559 138033559 1 + C A ESCA 138033555 + 138033535 138033575 41 GTCTGTCTGGCAGGGAATAACGGGCAGCAGTGAAGCCTGTG GTCTGTCTGGCAGGGAATAACGGGAAGCAGTGAAGCCTGTG < 41bp 0.45604038784141 0.776544063873261 0.88263273 0.8965098 prediction 0.553088127746522 Functional Gain - THSD7B ENSG00000144229 CDS Human protein_coding chr2:138033555 chr2:138033559 synonymous SNV . 0 25 hm5C_associated_SNPs_104197 0 0 0 0 2 nucleoplasm 0.500232310280372 0.500231644761804 0.0277541400000001 0 hm5C_site_57342 DeepMRMD:0.0277541400000001;iRNA_m5C:0 57343 chr15 52472460 52472460 1 + C G rs556137433 52472459 + 52472439 52472479 41 TTCTGGGGAGACCGGTGAGGCCCCCGCGACATGGCCCTCCC TTCTGGGGAGACCGGTGAGGCGCCCGCGACATGGCCCTCCC < 41bp 0.531713004282231 0.80825256532217 0.24282935 0.37601775 prediction 0.553079122079878 Functional Gain - CERNA1 ENSG00000259577 ncRNA_exonic Human lincRNA chr15:52472459 chr15:52472460 . . 0 22 hm5C_associated_SNPs_104198 0 0 0 0 0 unknown 0.500231643921092 0.500231643920581 0 0 hm5C_site_57343 DeepMRMD:0;iRNA_m5C:0 57344 chr17 33454312 33454312 1 + T A LUAD 33454308 + 33454288 33454328 41 CCCAGATGGCCACAAGGGGCCTGCTGGACCTTGACAACCCT CCCAGATGGCCACAAGGGGCCTGCAGGACCTTGACAACCCT < 41bp 0.458560421710464 0.776483122503285 0.018744588 0.034139693 prediction 0.552966245006569 Functional Gain - FNDC8 ENSG00000073598 CDS Human protein_coding chr17:33454308 chr17:33454312 nonsynonymous SNV 0.781 3 25 hm5C_associated_SNPs_104199 0 0 0 0 0 exosome 0.500231643921102 0.50023164392196 0 1.71507252844094e-12 hm5C_site_57344 DeepMRMD:0;iRNA_m5C:1.71507252844094e-12 57345 chr11 65154544 65154544 1 + C G LUAD 65154540 + 65154520 65154560 41 GAAGGCAGTGCCGGGCAGCCCGGCCCCGCTGAGCGATCCCA GAAGGCAGTGCCGGGCAGCCCGGCGCCGCTGAGCGATCCCA < 41bp 0.49144549388392 0.776470269550534 0.21079761 0.755086 prediction 0.552940539101068 Functional Gain - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65154540 chr11:65154544 nonsynonymous SNV 0.226 2 25 hm5C_associated_SNPs_104200 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643891537 0.510172 0 hm5C_site_57345 DeepMRMD:0.510172;iRNA_m5C:0 57346 chr2 70131588 70131588 1 + T G rs564137993 70131585 + 70131565 70131605 41 AATCTTATTTATGATATATGCAGTTAACTTACCTTGCCTCA AATCTTATTTATGATATATGCAGGTAACTTACCTTGCCTCA < 41bp 0.432863816820474 0.77645866645001 0.17700315 0.8774749 prediction 0.552917332900021 Functional Gain - SNRNP27 ENSG00000124380 UTR3 Human protein_coding chr2:70131585 chr2:70131588 . . 0 24 hm5C_associated_SNPs_104201 0 0 1 3 0 Ribosome 0.500231643872832 0.500231642386064 0.7549498 0 hm5C_site_57346 DeepMRMD:0.7549498;iRNA_m5C:0 57347 chr1 240256802 240256802 1 + C A SKCM 240256798 + 240256778 240256818 41 ACTGCCCTGGCCTCCGTAGCCGCCCCGGCCAAGAAGCACCG ACTGCCCTGGCCTCCGTAGCCGCCACGGCCAAGAAGCACCG < 41bp 0.39195367850798 0.776449812187662 0.1756593 0.4046047 prediction 0.552899624375325 Functional Gain - FMN2 ENSG00000155816 CDS Human protein_coding chr1:240256798 chr1:240256802 nonsynonymous SNV 0.033 1 25 hm5C_associated_SNPs_104202 0 0 0 0 0 Endoplasmic reticulum 0.500231643920809 0.500231643926601 0 1.15840670389389e-11 hm5C_site_57347 DeepMRMD:0;iRNA_m5C:1.15840670389389e-11 57348 chr3 196388349 196388349 1 + C G SKCM 196388345 + 196388325 196388365 41 GGGGGGCCCTGCAGCATGGGCAGACGGTGGCCGACTGGGCC GGGGGGCCCTGCAGCATGGGCAGAGGGTGGCCGACTGGGCC < 41bp 0.51528860692528 0.791728916433372 0.7576901 0.883858 prediction 0.552880619016185 Functional Gain - NRROS ENSG00000174004 CDS Human protein_coding chr3:196388345 chr3:196388349 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_104203 0 0 1 0 0 chromatin 0.500231643921067 0.500231643920259 0.2523358 0 hm5C_site_57348 DeepMRMD:0.2523358;iRNA_m5C:0 57349 chr12 85677393 85677393 1 + C G HNSC 85677392 + 85677372 85677412 41 AGAAGGACAGCCCCTTCACACCGAACTGAATAGAGCTATGG AGAAGGACAGCCCCTTCACACGGAACTGAATAGAGCTATGG < 41bp 0.548765275462064 0.825201664304141 0.105116725 0.45653883 prediction 0.552872777684153 Functional Gain - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85677392 chr12:85677393 synonymous SNV . 0 22 hm5C_associated_SNPs_104204 0 0 1 0 1 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_57349 DeepMRMD:0;iRNA_m5C:0 57350 chr4 2916685 2916685 1 + C A COAD 2916681 + 2916661 2916701 41 CCACGTCATTGTGAGCACCACGGGCCCCAACCCCTTCACCA CCACGTCATTGTGAGCACCACGGGACCCAACCCCTTCACCA < 41bp 0.405888772514239 0.776429942013903 0.4217744 0.57590336 prediction 0.552859884027807 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2916681 chr4:2916685 synonymous SNV . 0 25 hm5C_associated_SNPs_104205 0 0 1 0 2 Ribosome 0.500231646294744 0.500231650449764 0.15180672 8.31003954537834e-09 hm5C_site_57350 DeepMRMD:0.15180672;iRNA_m5C:8.31003954537834e-09 57351 chr4 134084187 134084187 1 + T A STAD 134084183 + 134084163 134084203 41 ATGTAAAGCTCTGGGCCACTCAGATCGGTGCTGGATGCCTT ATGTAAAGCTCTGGGCCACTCAGAACGGTGCTGGATGCCTT < 41bp 0.467122175953389 0.77642970493269 0.06274158 0.17481369 prediction 0.55285940986538 Functional Gain - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134084183 chr4:134084187 nonsynonymous SNV 0.924 1 25 hm5C_associated_SNPs_104206 0 0 0 0 1 cytosol 0.500231643924473 0.50023164385961 0 0 hm5C_site_57351 DeepMRMD:0;iRNA_m5C:0 57352 chr17 8172467 8172467 1 + C A LUSC 8172463 + 8172443 8172483 41 CTGTCATGCCTCACCCTGAGCGGGCCGTTAGGCCTTGGCAG CTGTCATGCCTCACCCTGAGCGGGACGTTAGGCCTTGGCAG < 41bp 0.62036149130633 0.896771820747819 0.77358866 0.8323257 prediction 0.552820658882979 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8172463 chr17:8172467 nonsynonymous SNV 0.973 1 25 hm5C_associated_SNPs_104207 0 0 1 0 0 Nucleus 0.500231645551152 0.50023164751428 0.11747408 3.92625731926444e-09 hm5C_site_57352 DeepMRMD:0.11747408;iRNA_m5C:3.92625731926444e-09 57353 chr11 18195203 18195203 1 + C A LUAD 18195199 + 18195179 18195219 41 TGGCCCATCTGGTACCGCTGCCGCCGCCCCACACACCTGTC TGGCCCATCTGGTACCGCTGCCGCAGCCCCACACACCTGTC < 41bp 0.383149519594543 0.776402631905664 0.39182797 0.346721 prediction 0.552805263811328 Functional Gain - MRGPRX4 ENSG00000179817 CDS Human protein_coding chr11:18195199 chr11:18195203 nonsynonymous SNV 0.002 4 25 hm5C_associated_SNPs_104208 0 0 0 0 0 unknown 0.50023164391455 0.50023164392108 0 1.30613297955051e-11 hm5C_site_57353 DeepMRMD:0;iRNA_m5C:1.30613297955051e-11 57354 chrX 128927005 128927005 1 + T G HNSC 128927002 + 128926982 128927022 41 CCTGCTCAATGGCTACCAGACACTGGAAGACTTCAAAGAGC CCTGCTCAATGGCTACCAGACACGGGAAGACTTCAAAGAGC < 41bp 0.382949793477781 0.776387876060635 0.074928224 0.11528754 prediction 0.55277575212127 Functional Gain - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128927002 chrX:128927005 nonsynonymous SNV 0.965 5 24 hm5C_associated_SNPs_104209 0 0 0 0 1 exosome 0.500231589933578 0.500231667984134 0 1.56101111148388e-07 hm5C_site_57354 DeepMRMD:0;iRNA_m5C:1.56101111148388e-07 57355 chr1 205436110 205436110 1 + T G rs546172692 205436108 + 205436088 205436128 41 GTCTCGGCTGGCCCATAACTCCTGAGCTACACAGACCCCTA GTCTCGGCTGGCCCATAACTCCGGAGCTACACAGACCCCTA < 41bp 0.586773782802042 0.863161334132597 0.24269801 0.89230406 prediction 0.55277510266111 Functional Gain - BLACAT1;CDK18 ENSG00000224717 ncRNA_exonic Human lincRNA chr1:205436108 chr1:205436110 . . 0 23 hm5C_associated_SNPs_104210 0 0 0 0 0 unknown 0.500231643928853 0.500231643921477 0.78460812 0 hm5C_site_57355 DeepMRMD:0.78460812;iRNA_m5C:0 57356 chr1 156703828 156703828 1 + C A UCEC 156703824 + 156703804 156703844 41 GTCCAAACCAGCCCTCGTCACTCCCCACACCACGTGGTTAG GTCCAAACCAGCCCTCGTCACTCCACACACCACGTGGTTAG < 41bp 0.352946605893675 0.776379266229466 0.12633434 0.9443478 prediction 0.552758532458932 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156703824 chr1:156703828 nonsynonymous SNV 0.385 4 25 hm5C_associated_SNPs_104211 0 0 1 0 1 chromatin 0.500231643912726 0.500231640470262 0.8886956 0 hm5C_site_57356 DeepMRMD:0.8886956;iRNA_m5C:0 57357 chr18 76754334 76754334 1 + C G LUSC 76754333 + 76754313 76754353 41 CTTCCAGGATGCCATGGACTCCGAGCTGGCCTACGACGACA CTTCCAGGATGCCATGGACTCGGAGCTGGCCTACGACGACA < 41bp 0.471822405185249 0.77637810720858 0.44043702 0.92260706 prediction 0.552756214417161 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76754333 chr18:76754334 synonymous SNV . 0 22 hm5C_associated_SNPs_104212 0 0 0 0 0 exosome 0.500231643956527 0.5002316469479 0.84521412 5.98274563223811e-09 hm5C_site_57357 DeepMRMD:0.84521412;iRNA_m5C:5.98274563223811e-09 57358 chr8 105361658 105361658 1 + T G UCEC 105361656 + 105361636 105361676 41 ACTCCTAAAGAAAGGAAAAACCTGGGGCTGTTTTTCCTCCC ACTCCTAAAGAAAGGAAAAACCGGGGGCTGTTTTTCCTCCC < 41bp 0.593836428717961 0.870197667457299 0.57074195 0.9279198 prediction 0.552722477478676 Functional Gain - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361656 chr8:105361658 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_104213 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.7143557 0 hm5C_site_57358 DeepMRMD:0.7143557;iRNA_m5C:0 57359 chr12 8287251 8287251 1 + G T rs764509748 8287255 - 8287235 8287275 41 GGGGGATTCCCCCATGTCCCCCGCCGTATGAGTTCTGCGGG GGGGGATTCCCCCATGTCCCCCGCAGTATGAGTTCTGCGGG < 41bp 0.434764367308872 0.776361067335947 0.08361679 0.05548355 prediction 0.552722134671894 Functional Gain - POU5F1P3 ENSG00000235602 ncRNA_exonic Human processed_pseudogene chr12:8287255 chr12:8287251 . . 0 25 hm5C_associated_SNPs_104214 0 0 0 0 0 unknown 0.50023164531933 0.500231643921092 0 0 hm5C_site_57359 DeepMRMD:0;iRNA_m5C:0 57360 chr1 150121929 150121929 1 + C G rs76413654 150121928 + 150121908 150121948 41 CCGGAGCGAGGGTCCCTGCCCCCTGGGGAGCGGTCTCCAGC CCGGAGCGAGGGTCCCTGCCCGCTGGGGAGCGGTCTCCAGC < 41bp 0.518303353791472 0.794648046894106 0.31560683 0.5857567 prediction 0.552689386205267 Functional Gain - PLEKHO1 ENSG00000023902 UTR5 Human protein_coding chr1:150121928 chr1:150121929 . . 0 22 hm5C_associated_SNPs_104215 0 0 0 0 1 Ribosome 0.500231638922251 0.500230543127092 0.1715134 0 hm5C_site_57360 DeepMRMD:0.1715134;iRNA_m5C:0 57361 chr19 35775917 35775917 1 + C A UCEC 35775913 + 35775893 35775933 41 TCTGCTGCGGCTGCTGTCATCGATCAAAGTGTGGGATGTGC TCTGCTGCGGCTGCTGTCATCGATAAAAGTGTGGGATGTGC < 41bp 0.386689977225346 0.776331711099925 0.14624473 0.31650776 prediction 0.55266342219985 Functional Gain - HAMP ENSG00000105697 CDS Human protein_coding chr19:35775913 chr19:35775917 stopgain 0.001 0 25 hm5C_associated_SNPs_104216 0 0 1 0 1 Endoplasmic reticulum 0.500231644538511 0.500231643930117 0 0 hm5C_site_57361 DeepMRMD:0;iRNA_m5C:0 57362 chr2 128408553 128408553 1 + C G UCEC 128408549 + 128408529 128408569 41 GCCGTGGCCGACTTGTCGTGCGTGCTGGTCCTGCCCACCCG GCCGTGGCCGACTTGTCGTGCGTGGTGGTCCTGCCCACCCG < 41bp 0.535035081414625 0.811344248839743 0.53873307 0.8459871 prediction 0.552618334850236 Functional Gain - GPR17 ENSG00000144230 CDS Human protein_coding chr2:128408549 chr2:128408553 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_104217 0 0 0 0 0 Endoplasmic reticulum 0.500229256264769 0.500230143985312 0.61450806 1.77544108681538e-06 hm5C_site_57362 DeepMRMD:0.61450806;iRNA_m5C:1.77544108681538e-06 57363 chr9 136320513 136320513 1 + C G COAD 136320512 + 136320492 136320532 41 TCTGCCAGCACTTGCCCAAGCCGGTGACTGTGCGTGGCTGC TCTGCCAGCACTTGCCCAAGCGGGTGACTGTGCGTGGCTGC < 41bp 0.484897971958564 0.776308476743834 0.29829443 0.7795913 prediction 0.552616953487668 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136320512 chr9:136320513 nonsynonymous SNV 0.751 3 22 hm5C_associated_SNPs_104218 0 0 1 0 0 nucleus 0.500231643921093 0.500231643921079 0.5591826 0 hm5C_site_57363 DeepMRMD:0.5591826;iRNA_m5C:0 57364 chr1 101188742 101188742 1 + C G PRAD 101188738 + 101188718 101188758 41 TCAGGAATTTCTGGAGGATGCAGACAGGAAGTCCCTGGAAA TCAGGAATTTCTGGAGGATGCAGAGAGGAAGTCCCTGGAAA < 41bp 0.494090472552987 0.776308186211223 0.34567907 0.80042326 prediction 0.552616372422447 Functional Gain - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101188738 chr1:101188742 nonsynonymous SNV 0.041 0 25 hm5C_associated_SNPs_104219 0 0 0 0 0 exosome 0.500231643918972 0.500231644003978 0.60084652 1.70011560385319e-10 hm5C_site_57364 DeepMRMD:0.60084652;iRNA_m5C:1.70011560385319e-10 57365 chr11 55136114 55136114 1 + C A UCEC 55136110 + 55136090 55136130 41 TTTCCTATGGGGTCATATTACACTCTCTTAAGACTCAGAGT TTTCCTATGGGGTCATATTACACTATCTTAAGACTCAGAGT < 41bp 0.399993769589279 0.776297536227098 0.052066326 0.09910807 prediction 0.552595072454196 Functional Gain - OR4A15 ENSG00000181958 CDS Human protein_coding chr11:55136110 chr11:55136114 nonsynonymous SNV 0.672 2 25 hm5C_associated_SNPs_104220 0 0 0 0 0 unknown 0.500231643922184 0.50023164292004 0 0 hm5C_site_57365 DeepMRMD:0;iRNA_m5C:0 57366 chr11 55111166 55111166 1 + C A LUSC 55111162 + 55111142 55111182 41 GTTCAAATTGTCTTTCTGTACAGTCTACCAATCTGTGGCCC GTTCAAATTGTCTTTCTGTACAGTATACCAATCTGTGGCCC < 41bp 0.406071729001983 0.776292053378913 0.048272073 0.048686206 prediction 0.552584106757827 Functional Gain - OR4A16 ENSG00000181961 CDS Human protein_coding chr11:55111162 chr11:55111166 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_104221 0 0 0 0 0 unknown 0.500231643921092 0.500231643925952 0 9.72000258059325e-12 hm5C_site_57366 DeepMRMD:0;iRNA_m5C:9.72000258059325e-12 57367 chr11 48510590 48510590 1 + C A LUAD 48510586 + 48510566 48510606 41 CATTTCCCCCAGATTGATTTCAGGCTTGTTCTTTGGGAATA CATTTCCCCCAGATTGATTTCAGGATTGTTCTTTGGGAATA < 41bp 0.608547161084018 0.884836316558536 0.6692865 0.82251805 prediction 0.552578310949036 Functional Gain - OR4A47 ENSG00000237388 CDS Human protein_coding chr11:48510586 chr11:48510590 synonymous SNV . 0 25 hm5C_associated_SNPs_104222 0 0 0 0 0 unknown 0.500231644107773 0.500239637998828 0.3064631 1.59877821097609e-05 hm5C_site_57367 DeepMRMD:0.3064631;iRNA_m5C:1.59877821097609e-05 57368 chr20 35177614 35177614 1 + C A SKCM 35177610 + 35177590 35177630 41 AACTTCAACTACGTGGAGTTCACCCGCATCCTCAAACATGG AACTTCAACTACGTGGAGTTCACCAGCATCCTCAAACATGG < 41bp 0.365691908015584 0.776284965388707 0.018096477 0.06569952 prediction 0.552569930777414 Functional Gain - MYL9 ENSG00000101335 CDS Human protein_coding chr20:35177610 chr20:35177614 nonsynonymous SNV 0.984 1 25 hm5C_associated_SNPs_104223 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_57368 DeepMRMD:0;iRNA_m5C:0 57369 chr5 149213217 149213217 1 + C A rs12659862 149213213 + 149213193 149213233 41 GCGGGAGCTGGGCAGCCCCACGGACGAGGACAGTGGCCAAG GCGGGAGCTGGGCAGCCCCACGGAAGAGGACAGTGGCCAAG < 41bp 0.382255872997934 0.77627736348939 0.69417006 0.75867116 prediction 0.552554726978781 Functional Gain - PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149213213 chr5:149213217 nonsynonymous SNV 0.313 0 25 hm5C_associated_SNPs_104224 0 0 0 0 0 chromatin 0.500231853431842 0.500231644245996 0.1290022 0 hm5C_site_57369 DeepMRMD:0.1290022;iRNA_m5C:0 57370 chr20 1108109 1108109 1 + T C GBM 1108107 + 1108087 1108127 41 GTGGCAGACTTGACCCTGAACTTGGATGATTATATCGATGC GTGGCAGACTTGACCCTGAACTCGGATGATTATATCGATGC < 41bp 0.50878418115867 0.78505712499135 0.051392257 0.08347952 prediction 0.55254588766536 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1108107 chr20:1108109 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_104225 0 0 1 0 2 Ribosome 0.500231643921764 0.500231643921093 0 0 hm5C_site_57370 DeepMRMD:0;iRNA_m5C:0 57371 chr2 130737955 130737955 1 + T A rs6741303 130737951 + 130737931 130737971 41 GTACATCCGTGATTCTGCTGCAGCTGTAGTAGTTTACGATA GTACATCCGTGATTCTGCTGCAGCAGTAGTAGTTTACGATA < 41bp 0.548478852613205 0.82473276256637 0.31519213 0.38488942 prediction 0.55250781990633 Functional Gain - RAB6C ENSG00000222014 CDS Human protein_coding chr2:130737951 chr2:130737955 synonymous SNV . 0 25 hm5C_associated_SNPs_104226 0 0 0 0 0 exosome 0.500231661087626 0.500232017756182 0 7.13337111823975e-07 hm5C_site_57371 DeepMRMD:0;iRNA_m5C:7.13337111823975e-07 57372 chr6 46801013 46801013 1 + C A SARC 46801009 + 46800989 46801029 41 CTCCCAAGTCCTTGAGAACACCAGCAAAGGGGACAAGCTTC CTCCCAAGTCCTTGAGAACACCAGAAAAGGGGACAAGCTTC < 41bp 0.375829363394885 0.776240388270145 0.025662363 0.06257546 prediction 0.55248077654029 Functional Gain - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46801009 chr6:46801013 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104227 0 0 0 0 0 cytosol 0.500231617407955 0.500231641618207 0 4.84205036066498e-08 hm5C_site_57372 DeepMRMD:0;iRNA_m5C:4.84205036066498e-08 57373 chr10 75676767 75676767 1 + T A rs145634997 75676763 + 75676743 75676783 41 CTTAGCCAATGTGGGAGCAGCGGTTTGGGGAGCAGAGACAC CTTAGCCAATGTGGGAGCAGCGGTATGGGGAGCAGAGACAC < 41bp 0.486155880812688 0.776237119094833 0.9081213 0.8960526 prediction 0.552474238189667 Functional Gain - PLAU ENSG00000122861 UTR3 Human protein_coding chr10:75676763 chr10:75676767 . . 0 25 hm5C_associated_SNPs_104228 1 0 0 0 1 Endoplasmic reticulum 0.500231643913652 0.500231643918691 0 1.0079048706757e-11 hm5C_site_57373 DeepMRMD:0;iRNA_m5C:1.0079048706757e-11 Quebec platelet disorder Quebec platelet disorder 57374 chr12 107155035 107155035 1 + C A LGG 107155031 + 107155011 107155051 41 TGTTTGATGAGCAGTACTCCCAGACTGCATCCTACCCCAGT TGTTTGATGAGCAGTACTCCCAGAATGCATCCTACCCCAGT < 41bp 0.38746568566099 0.776233985790463 0.28527635 0.59489965 prediction 0.552467971580926 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107155031 chr12:107155035 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_104229 0 0 0 0 1 nucleoplasm 0.500234943609265 0.500231608314654 0.1897993 0 hm5C_site_57374 DeepMRMD:0.1897993;iRNA_m5C:0 57375 chr8 12888854 12888854 1 + C A rs543615043 12888850 + 12888830 12888870 41 CATTGTAGGGAGGAAGAGTCCCGGCCCTGGCTGATGGCTCT CATTGTAGGGAGGAAGAGTCCCGGACCTGGCTGATGGCTCT < 41bp 0.424271003324434 0.776218767774057 0.036671728 0.055568844 prediction 0.552437535548114 Functional Gain - KIAA1456;DLC1 ENSG00000250305 CDS Human protein_coding chr8:12888850 chr8:12888854 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_104230 0 0 0 0 0 unknown 0.500231643921036 0.500231643921092 0 1.13686837721616e-13 hm5C_site_57375 DeepMRMD:0;iRNA_m5C:1.13686837721616e-13 57376 chr17 38133100 38133100 1 + T A COAD 38133096 + 38133076 38133116 41 GCACGATGGAACAGAACTTCCTGCTGGATAAAGAGGGTGTT GCACGATGGAACAGAACTTCCTGCAGGATAAAGAGGGTGTT < 41bp 0.561301459056338 0.837516249877895 0.14363915 0.20623475 prediction 0.552429581643114 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38133096 chr17:38133100 nonsynonymous SNV 0.811 0 25 hm5C_associated_SNPs_104231 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_57376 DeepMRMD:0;iRNA_m5C:0 57377 chr9 133944379 133944379 1 + C A UCEC 133944375 + 133944355 133944395 41 CACCTGCCGCCCAGGTGTCACAGGCCAGGCCTGTGACAGGT CACCTGCCGCCCAGGTGTCACAGGACAGGCCTGTGACAGGT < 41bp 0.373255837231845 0.776204188633154 0.37138072 0.39605728 prediction 0.552408377266307 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133944375 chr9:133944379 synonymous SNV . 0 25 hm5C_associated_SNPs_104232 0 0 0 0 2 chromatin 0.500231643911912 0.500231643945339 0 6.68558541860875e-11 hm5C_site_57377 DeepMRMD:0;iRNA_m5C:6.68558541860875e-11 57378 chr17 76200752 76200752 1 + C A UCEC 76200748 + 76200728 76200768 41 TCTCTGCAGTAAGGATGAGTCTGCCTTCATGGTCCACCCGC TCTCTGCAGTAAGGATGAGTCTGCATTCATGGTCCACCCGC < 41bp 0.639915701480315 0.916118490928561 0.13996887 0.5103539 prediction 0.552405578896494 Functional Gain - AFMID ENSG00000183077 CDS Human protein_coding chr17:76200748 chr17:76200752 synonymous SNV . 0 25 hm5C_associated_SNPs_104233 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921095 0.0207078000000001 5.99520433297585e-15 hm5C_site_57378 DeepMRMD:0.0207078000000001;iRNA_m5C:5.99520433297585e-15 57379 chr10 73990180 73990180 1 + C A UCEC 73990176 + 73990156 73990196 41 TTTAGCTATCAAGTGGCATCCACGCTTAAACAGGTGAAACA TTTAGCTATCAAGTGGCATCCACGATTAAACAGGTGAAACA < 41bp 0.38244322084707 0.776183101601943 0.22735542 0.17516556 prediction 0.552366203203886 Functional Gain - ANAPC16 ENSG00000166295 CDS Human protein_coding chr10:73990176 chr10:73990180 nonsynonymous SNV 0.987 3 25 hm5C_associated_SNPs_104234 0 0 1 0 2 Ribosome 0.500231643961677 0.500231644188154 0 4.5295323047867e-10 hm5C_site_57379 DeepMRMD:0;iRNA_m5C:4.5295323047867e-10 57380 chr19 55048342 55048342 1 + C A LGG 55048338 + 55048318 55048358 41 CTATGGTTCCTTCAATGACTCTCCCTATAAGCCCCCAGTGA CTATGGTTCCTTCAATGACTCTCCATATAAGCCCCCAGTGA < 41bp 0.360995606234763 0.776162664028856 0.1451959 0.9526715 prediction 0.552325328057713 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55048338 chr19:55048342 synonymous SNV . 0 25 hm5C_associated_SNPs_104235 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921252 0.905343 3.2085445411667e-13 hm5C_site_57380 DeepMRMD:0.905343;iRNA_m5C:3.2085445411667e-13 57381 chr4 74318261 74318261 1 + T A LUAD 74318257 + 74318237 74318277 41 GGTGGATGAAACATATGTCCCTCCTGCATTCTCTGATGACA GGTGGATGAAACATATGTCCCTCCAGCATTCTCTGATGACA < 41bp 0.437025340973323 0.776152980870367 0.04272619 0.78050315 prediction 0.552305961740733 Functional Gain - AFP ENSG00000081051 CDS Human protein_coding chr4:74318257 chr4:74318261 synonymous SNV . 0 25 hm5C_associated_SNPs_104236 0 0 1 0 0 Endoplasmic reticulum 0.500231644206886 0.500231598830579 0.5610063 0 hm5C_site_57381 DeepMRMD:0.5610063;iRNA_m5C:0 57382 chr9 130865985 130865985 1 + C G HNSC 130865981 + 130865961 130866001 41 TCTTTGATGTGGGTGAGAATCTAACGGTCCCGGATGAGTTC TCTTTGATGTGGGTGAGAATCTAAGGGTCCCGGATGAGTTC < 41bp 0.491233808818979 0.776148566468913 0.030295968 0.0911302 prediction 0.552297132937827 Functional Gain - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130865981 chr9:130865985 nonsynonymous SNV 0.365 3 25 hm5C_associated_SNPs_104237 0 0 1 0 1 Ribosome 0.50023164624261 0.500231643984649 0 0 hm5C_site_57382 DeepMRMD:0;iRNA_m5C:0 57383 chr10 13684716 13684716 1 + T G rs574331673 13684714 + 13684694 13684734 41 ATTTACATGTAGAAGACTTACGTGAGGGCCCTTTGTCTTTT ATTTACATGTAGAAGACTTACGGGAGGGCCCTTTGTCTTTT < 41bp 0.559778253255735 0.8359258924977 0.34992212 0.90182924 prediction 0.552295278483931 Functional Gain - FRMD4A ENSG00000239665 intronic Human processed_transcript chr10:13684714 chr10:13684716 . . 0 23 hm5C_associated_SNPs_104238 0 0 1 0 0 Nucleus 0.500231643921349 0.500231643921093 0.80365848 0 hm5C_site_57383 DeepMRMD:0.80365848;iRNA_m5C:0 57384 chr9 35675543 35675543 1 + C G BRCA 35675542 + 35675522 35675562 41 TTCATTTATACAGGGGATGACCAGAGTCATTGGCGCTATGG TTCATTTATACAGGGGATGACGAGAGTCATTGGCGCTATGG < 41bp 0.552474910411084 0.828614229881618 0.72888094 0.8993104 prediction 0.552278638941067 Functional Gain - CA9 ENSG00000107159 CDS Human protein_coding chr9:35675542 chr9:35675543 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_104239 0 0 0 0 2 Endoplasmic reticulum 0.500231643920939 0.500231643921092 0.34085892 3.07531777821168e-13 hm5C_site_57384 DeepMRMD:0.34085892;iRNA_m5C:3.07531777821168e-13 57385 chr15 51201110 51201110 1 + C A UCEC 51201106 + 51201086 51201126 41 CAGCCTTGTCCGCGGCATCACAGCCCTCACCTCCAAGCACG CAGCCTTGTCCGCGGCATCACAGCACTCACCTCCAAGCACG < 41bp 0.559739755130851 0.835878722473795 0.087890446 0.1473243 prediction 0.552277934685887 Functional Gain - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51201106 chr15:51201110 synonymous SNV . 0 25 hm5C_associated_SNPs_104240 0 0 1 3 1 Nucleus 0.500228686312654 0.500231609451875 0 5.84627844157914e-06 hm5C_site_57385 DeepMRMD:0;iRNA_m5C:5.84627844157914e-06 57386 chrX 50653913 50653913 1 + C G PRAD 50653912 + 50653892 50653932 41 GCTGAGGCCCCTACTTTGCCCCTGATTGAGGAGCTGCTAGA GCTGAGGCCCCTACTTTGCCCGTGATTGAGGAGCTGCTAGA < 41bp 0.548683038632794 0.824817586675469 0.06784123 0.28546047 prediction 0.552269096085351 Functional Gain - BMP15 ENSG00000130385 CDS Human protein_coding chrX:50653912 chrX:50653913 nonsynonymous SNV 0.005 3 22 hm5C_associated_SNPs_104241 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57386 DeepMRMD:0;iRNA_m5C:0 57387 chr12 121132786 121132786 1 + T G LUAD 121132783 + 121132763 121132803 41 TGTCCACCTTCACAGGGAAACTCTACATTGAGTTTGTCAAG TGTCCACCTTCACAGGGAAACTCGACATTGAGTTTGTCAAG < 41bp 0.403031269511876 0.776129714990824 0.95533544 0.41376197 prediction 0.552259429981648 Functional Gain - MLEC ENSG00000110917 CDS Human protein_coding chr12:121132783 chr12:121132786 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_104242 0 0 1 0 1 Ribosome 0.500231643921093 0.500231477817111 0 0 hm5C_site_57387 DeepMRMD:0;iRNA_m5C:0 57388 chr17 47299571 47299571 1 + C A UCEC 47299567 + 47299547 47299587 41 TGATGAGCCCAGCTGGGTGCCTGCCTCATACTTGGAGAAAG TGATGAGCCCAGCTGGGTGCCTGCATCATACTTGGAGAAAG < 41bp 0.354275415681224 0.776128885687451 0.15460584 0.23169321 prediction 0.552257771374902 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47299567 chr17:47299571 synonymous SNV . 0 25 hm5C_associated_SNPs_104243 0 0 0 0 1 exosome 0.500231643921093 0.500231662285482 0 3.67287793512361e-08 hm5C_site_57388 DeepMRMD:0;iRNA_m5C:3.67287793512361e-08 57389 chr7 100212803 100212803 1 + C G OV 100212802 + 100212782 100212822 41 CACCATGGTGTTCCTCCGGACCTGAGCTCCGTGCTCAACCC CACCATGGTGTTCCTCCGGACGTGAGCTCCGTGCTCAACCC < 41bp 0.468079111598631 0.776127317319282 0.13069484 0.21191123 prediction 0.552254634638564 Functional Gain - MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100212802 chr7:100212803 synonymous SNV . 0 22 hm5C_associated_SNPs_104244 0 0 1 0 1 Cytosol 0.500231643932006 0.500229281978839 0 0 hm5C_site_57389 DeepMRMD:0;iRNA_m5C:0 57390 chr15 41672596 41672596 1 + T G rs58964563 41672594 + 41672574 41672614 41 ATTCTTTGGGATGGTTTTTACTTAAGTCCATTAACAATTCA ATTCTTTGGGATGGTTTTTACTGAAGTCCATTAACAATTCA < 41bp 0.481805703618816 0.776126131547102 0.0745703 0.24906579 prediction 0.552252263094204 Functional Gain - NUSAP1 ENSG00000137804 UTR3 Human protein_coding chr15:41672594 chr15:41672596 . . 0 23 hm5C_associated_SNPs_104245 0 0 1 0 0 Nucleus 0.500231643921192 0.500231643925287 0 8.189449118845e-12 hm5C_site_57390 DeepMRMD:0;iRNA_m5C:8.189449118845e-12 57391 chr19 57133979 57133979 1 + C G rs111496682 57133975 + 57133955 57133995 41 GGCGAGAAGCCGTACAGGTGCGGCCAGTGCGGGAAGTCCTT GGCGAGAAGCCGTACAGGTGCGGCGAGTGCGGGAAGTCCTT < 41bp 0.515079927571871 0.791201506163835 0.51402867 0.65930057 prediction 0.552243157183929 Functional Gain - ZNF71 ENSG00000197951 CDS Human protein_coding chr19:57133975 chr19:57133979 nonsynonymous SNV 0.966 0 25 hm5C_associated_SNPs_104246 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.2905438 0 hm5C_site_57391 DeepMRMD:0.2905438;iRNA_m5C:0 57392 chr4 1730215 1730215 1 + C A rs798757 1730211 + 1730191 1730231 41 AAGGAGACTGGGAGAGAGGTCCGGCCTCAAGCCTCCCTTGA AAGGAGACTGGGAGAGAGGTCCGGACTCAAGCCTCCCTTGA < 41bp 0.391039920882103 0.776115456967139 0.8263167 0.7953079 prediction 0.552230913934278 Functional Gain - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1730211 chr4:1730215 synonymous SNV . 0 25 hm5C_associated_SNPs_104247 0 0 1 0 0 Cytosol 0.500231643920925 0.500231643921092 0 3.35509398041722e-13 hm5C_site_57392 DeepMRMD:0;iRNA_m5C:3.35509398041722e-13 57393 chr8 67976657 67976657 1 + C G UCEC 67976656 + 67976636 67976676 41 GCTGTTCCCGCTCCAGGTGGCCGCTGTAACCTCTTCGGTCC GCTGTTCCCGCTCCAGGTGGCGGCTGTAACCTCTTCGGTCC < 41bp 0.520538821232016 0.796650716377658 0.2714082 0.37354827 prediction 0.552223790291284 Functional Gain - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:67976656 chr8:67976657 synonymous SNV . 0 22 hm5C_associated_SNPs_104248 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921023 0 0 hm5C_site_57393 DeepMRMD:0;iRNA_m5C:0 57394 chr12 53454545 53454545 1 + C G rs142497165 53454541 + 53454521 53454561 41 AGGCCTTGCCCCCTGTTTCCCAGGCAGGCACCGGAAAGGCC AGGCCTTGCCCCCTGTTTCCCAGGGAGGCACCGGAAAGGCC < 41bp 0.493781623842974 0.776077397699821 0.6464389 0.90564394 prediction 0.552154795399641 Functional Gain - TNS2 ENSG00000111077;ENSG00000111077 exonic;splicing Human other chr12:53454541 chr12:53454545 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_104249 0 0 0 0 1 cytosol 0.500231644849045 0.500231643920968 0.51841008 0 hm5C_site_57394 DeepMRMD:0.51841008;iRNA_m5C:0 57395 chr11 43515925 43515925 1 + T G rs35687112 43515923 + 43515903 43515943 41 GCAACGTTCTGCGCTCTCTCCGTTAGACCTCCATGCTGTCC GCAACGTTCTGCGCTCTCTCCGGTAGACCTCCATGCTGTCC < 41bp 0.458830703177266 0.776071982162649 0.0058605075 0.42413253 prediction 0.552143964325298 Functional Gain - TTC17 ENSG00000052841 UTR3 Human protein_coding chr11:43515923 chr11:43515925 . . 0 23 hm5C_associated_SNPs_104250 0 0 1 0 0 Nucleus 0.500231644314433 0.500231643924574 0 0 hm5C_site_57395 DeepMRMD:0;iRNA_m5C:0 57396 chr10 23728470 23728470 1 + C G rs147006133 23728469 + 23728449 23728489 41 CGCCCCCGCGCCACCCGCCGCCGCTACCCCCTTCAAGGTCT CGCCCCCGCGCCACCCGCCGCGGCTACCCCCTTCAAGGTCT < 41bp 0.511191506114743 0.787259123747518 0.19993842 0.40199885 prediction 0.552135235265551 Functional Gain - OTUD1 ENSG00000165312 CDS Human protein_coding chr10:23728469 chr10:23728470 synonymous SNV . 0 22 hm5C_associated_SNPs_104251 0 0 0 0 0 Cytosol 0.500231647857871 0.500231643921337 0 0 hm5C_site_57396 DeepMRMD:0;iRNA_m5C:0 57397 chr8 11644648 11644648 1 + C A rs2740439 11644644 + 11644624 11644664 41 TGGATACAGGCACCAAGAGGCGGTCGTGGAGCAGGGAGCTG TGGATACAGGCACCAAGAGGCGGTAGTGGAGCAGGGAGCTG < 41bp 0.565664197517388 0.841691992482459 0.44517967 0.79398173 prediction 0.552055589930142 Functional Gain - NEIL2 ENSG00000154328 UTR3 Human protein_coding chr8:11644644 chr8:11644648 . . 0 25 hm5C_associated_SNPs_104252 0 0 0 0 0 Ribosome 0.500231643921093 0.500231643921093 0.58796346 6.66133814775094e-16 hm5C_site_57397 DeepMRMD:0.58796346;iRNA_m5C:6.66133814775094e-16 57398 chr21 34399432 34399432 1 + T G BLCA 34399430 + 34399410 34399450 41 CAGCACCTCGTCGTCTACGTCGTCGGCGGCTGCGTCGTCCA CAGCACCTCGTCGTCTACGTCGGCGGCGGCTGCGTCGTCCA < 41bp 0.597935445066465 0.873948794656429 0.46273887 0.91657037 prediction 0.552026699179929 Functional Gain - OLIG2 ENSG00000205927 CDS Human protein_coding chr21:34399430 chr21:34399432 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_104253 0 0 0 0 0 exosome 0.500231639415162 0.500231683093227 0.83314074 8.73561305514414e-08 hm5C_site_57398 DeepMRMD:0.83314074;iRNA_m5C:8.73561305514414e-08 57399 chr8 7787954 7787954 1 + C A rs540627042 7787950 + 7787930 7787970 41 TCTTGGATGTCTGATACAAACAGCCTCAGGTAAGCTACAAG TCTTGGATGTCTGATACAAACAGCATCAGGTAAGCTACAAG < 41bp 0.488154180923005 0.776013253786397 0.17760786 0.10021809 prediction 0.552026507572794 Functional Gain - ZNF705B ENSG00000215356 UTR5 Human protein_coding chr8:7787950 chr8:7787954 . . 0 25 hm5C_associated_SNPs_104254 0 0 0 0 1 unknown 0.500231643921093 0.500231643921771 0 1.35735866990672e-12 hm5C_site_57399 DeepMRMD:0;iRNA_m5C:1.35735866990672e-12 57400 chr1 248551737 248551737 1 + C A HNSC 248551733 + 248551713 248551753 41 AATCAAAGATAAGGTCTTCTCTGCCTTTTATACCATCCTCA AATCAAAGATAAGGTCTTCTCTGCATTTTATACCATCCTCA < 41bp 0.623067685714389 0.899058973111465 0.082351565 0.21919215 prediction 0.551982574794153 Functional Gain - OR2T6 ENSG00000198104 CDS Human protein_coding chr1:248551733 chr1:248551737 synonymous SNV . 0 25 hm5C_associated_SNPs_104255 0 0 0 0 0 unknown 0.500231624400959 0.500231644090932 0 3.93799444164955e-08 hm5C_site_57400 DeepMRMD:0;iRNA_m5C:3.93799444164955e-08 57401 chr7 31747485 31747485 1 + C A rs115804369 31747481 + 31747461 31747501 41 AATGTATGAGCTGGGGGAGTCAACCCAGCCCACCATGCCTT AATGTATGAGCTGGGGGAGTCAACACAGCCCACCATGCCTT < 41bp 0.592951022118248 0.868937058289741 0.3381779 0.33579135 prediction 0.551972072342984 Functional Gain - PPP1R17 ENSG00000106341 UTR3 Human protein_coding chr7:31747481 chr7:31747485 . . 0 25 hm5C_associated_SNPs_104256 0 0 0 0 0 exosome 0.500231618482835 0.500231645979245 0 5.49928196313942e-08 hm5C_site_57401 DeepMRMD:0;iRNA_m5C:5.49928196313942e-08 57402 chr3 152553731 152553731 1 + C A UCEC 152553727 + 152553707 152553747 41 AAGACGGGCTTCCAGTTTTACTACCTGCCGGCTGTCTACAT AAGACGGGCTTCCAGTTTTACTACATGCCGGCTGTCTACAT < 41bp 0.361787584685372 0.775982345286503 0.13521767 0.88022125 prediction 0.551964690573005 Functional Gain - P2RY1 ENSG00000169860 CDS Human protein_coding chr3:152553727 chr3:152553731 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_104257 0 0 1 0 0 Endoplasmic reticulum 0.500231643921104 0.500231643921051 0.7604425 0 hm5C_site_57402 DeepMRMD:0.7604425;iRNA_m5C:0 57403 chr3 30691804 30691804 1 + T C COAD 30691802 + 30691782 30691822 41 TAACACTAGAGACAGTTTGCCATGACCCCAAGCTCCCCTAC TAACACTAGAGACAGTTTGCCACGACCCCAAGCTCCCCTAC < 41bp 0.504798492224571 0.780779690472029 0.07843825 0.08773637 prediction 0.551962396494917 Functional Gain - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30691802 chr3:30691804 synonymous SNV . 0 23 hm5C_associated_SNPs_104258 0 0 0 0 2 Cytosol 0.500231642001121 0.500231643687402 0 3.37256134130826e-09 hm5C_site_57403 DeepMRMD:0;iRNA_m5C:3.37256134130826e-09 57404 chr8 144681540 144681540 1 + C G rs565242910 144681539 + 144681519 144681559 41 GGCTGCCTTCGAGCCCCGGCCCGGCGAGGACAGTGCTGGGC GGCTGCCTTCGAGCCCCGGCCGGGCGAGGACAGTGCTGGGC < 41bp 0.484436906517616 0.775979404548275 0.66216254 0.8919446 prediction 0.55195880909655 Functional Gain - TIGD5 ENSG00000179886 CDS Human protein_coding chr8:144681539 chr8:144681540 synonymous SNV . 0 22 hm5C_associated_SNPs_104259 0 0 1 0 0 Ribosome 0.500231704052066 0.500231643943899 0.45956412 0 hm5C_site_57404 DeepMRMD:0.45956412;iRNA_m5C:0 57405 chr14 23847948 23847948 1 + C A LUAD 23847944 + 23847924 23847964 41 TCTCCCACTCAGCAAAGGTCCAGCCCCAGCCCTGGCCTGGC TCTCCCACTCAGCAAAGGTCCAGCACCAGCCCTGGCCTGGC < 41bp 0.375604059986107 0.775968655204078 0.060848176 0.1292254 prediction 0.551937310408155 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23847944 chr14:23847948 nonsynonymous SNV 0.004 2 25 hm5C_associated_SNPs_104260 0 0 0 0 1 exosome 0.500231643924912 0.500231651466087 0 1.50823507016895e-08 hm5C_site_57405 DeepMRMD:0;iRNA_m5C:1.50823507016895e-08 57406 chr7 143507907 143507907 1 + T G rs561752426 143507904 + 143507884 143507924 41 AGCTGTGAGCCGGGAAAATCCAGTTGCCAGTGACTCCTATG AGCTGTGAGCCGGGAAAATCCAGGTGCCAGTGACTCCTATG < 41bp 0.400169570562397 0.775967918666087 0.7780402 0.9024915 prediction 0.551935837332175 Functional Gain - TCAF2P1 ENSG00000159860 ncRNA_exonic Human unprocessed_pseudogene chr7:143507904 chr7:143507907 . . 0 24 hm5C_associated_SNPs_104261 0 0 0 0 0 unknown 0.500231642113644 0.500231643921007 0.2489026 3.61472518584094e-09 hm5C_site_57406 DeepMRMD:0.2489026;iRNA_m5C:3.61472518584094e-09 57407 chr16 1035497 1035497 1 + T A rs571955505 1035493 + 1035473 1035513 41 AGTGGCTGAGCTCCAAGTGCCTGCTGAAGTCTGCAGGGAAA AGTGGCTGAGCTCCAAGTGCCTGCAGAAGTCTGCAGGGAAA < 41bp 0.513347949314674 0.789297812542608 0.24779281 0.32683963 prediction 0.551899726455868 Functional Gain - SOX8 ENSG00000005513 UTR3 Human protein_coding chr16:1035493 chr16:1035497 . . 0 25 hm5C_associated_SNPs_104262 0 0 0 0 0 exosome 0.500231655846878 0.50023161051267 0 0 hm5C_site_57407 DeepMRMD:0;iRNA_m5C:0 57408 chr17 60526013 60526013 1 + C G rs528434306 60526012 + 60525992 60526032 41 GATCGCCGACTGCAGGTGAACCGAGGAAAGCAACTGACAAT GATCGCCGACTGCAGGTGAACGGAGGAAAGCAACTGACAAT < 41bp 0.52932468693544 0.80527131704845 0.89179003 0.8996546 prediction 0.551893260226019 Functional Gain - METTL2A ENSG00000087995 CDS Human protein_coding chr17:60526012 chr17:60526013 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_104263 0 0 1 0 1 Ribosome 0.500231642938204 0.500231665226712 0.0157291399999999 4.45770165224957e-08 hm5C_site_57408 DeepMRMD:0.0157291399999999;iRNA_m5C:4.45770165224957e-08 57409 chr11 63137809 63137809 1 + C G LUSC 63137808 + 63137788 63137828 41 AGTGTCGTCGCTTTGTTCATCCTCAGTGGCAGCTCCTTCAC AGTGTCGTCGCTTTGTTCATCGTCAGTGGCAGCTCCTTCAC < 41bp 0.536097615513279 0.812033802651774 0.04700944 0.23698509 prediction 0.55187237427699 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63137808 chr11:63137809 nonsynonymous SNV 0.003 4 22 hm5C_associated_SNPs_104264 0 0 0 3 0 nucleus 0.500231606289459 0.500230807337048 0 0 hm5C_site_57409 DeepMRMD:0;iRNA_m5C:0 57410 chr19 14034176 14034176 1 + T A UCEC 14034172 + 14034152 14034192 41 CCTGCCCCTGTCAACAAGGACGACTTTGCCCTGGTCCAGCG CCTGCCCCTGTCAACAAGGACGACATTGCCCTGGTCCAGCG < 41bp 0.459330262481053 0.775934236184095 0.043626666 0.099674284 prediction 0.55186847236819 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14034172 chr19:14034176 nonsynonymous SNV 0.957 2 25 hm5C_associated_SNPs_104265 0 0 1 0 2 chromatin 0.500231643921101 0.50023164392249 0 2.77888823063677e-12 hm5C_site_57410 DeepMRMD:0;iRNA_m5C:2.77888823063677e-12 57411 chr15 40558460 40558460 1 + C A rs35501648 40558456 + 40558436 40558476 41 CAGAGCTCCCCACCAGGAGCCTCGCCCCCCACGGGCACCAA CAGAGCTCCCCACCAGGAGCCTCGACCCCCACGGGCACCAA < 41bp 0.353129978927786 0.775918929784247 0.11688027 0.30578643 prediction 0.551837859568493 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40558456 chr15:40558460 nonsynonymous SNV 0.641 0 25 hm5C_associated_SNPs_104266 0 0 0 0 0 unknown 0.500231643921092 0.50023164391989 0 0 hm5C_site_57411 DeepMRMD:0;iRNA_m5C:0 57412 chr18 76753216 76753216 1 + C A OV 76753212 + 76753192 76753232 41 CCGCCCAATGTGTCGGTGTTCGAGCCCAAAGCCAGCGCCGA CCGCCCAATGTGTCGGTGTTCGAGACCAAAGCCAGCGCCGA < 41bp 0.623996791887255 0.899913099281075 0.4015262 0.5553309 prediction 0.551832614787639 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76753212 chr18:76753216 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_104267 0 0 0 0 0 exosome 0.500231643921101 0.50023164392168 0.1106618 1.15729648086926e-12 hm5C_site_57412 DeepMRMD:0.1106618;iRNA_m5C:1.15729648086926e-12 57413 chr17 56247483 56247483 1 + C A HNSC 56247479 + 56247459 56247499 41 CCTGGGTGGGAGGCTTTGTCCACTCTATTGTCCAGCTGGCT CCTGGGTGGGAGGCTTTGTCCACTATATTGTCCAGCTGGCT < 41bp 0.384776938087276 0.77590116016624 0.83955395 0.27042294 prediction 0.55180232033248 Functional Gain - OR4D2 ENSG00000255713 CDS Human protein_coding chr17:56247479 chr17:56247483 nonsynonymous SNV 0.560 4 25 hm5C_associated_SNPs_104268 0 0 0 0 0 unknown 0.500231643916776 0.500231643920969 0 8.38573654959873e-12 hm5C_site_57413 DeepMRMD:0;iRNA_m5C:8.38573654959873e-12 57414 chr22 24658477 24658477 1 + C G LUAD 24658473 + 24658453 24658493 41 TCACGGAAGTACAGCTTCAGCGTGCCTGCGATGGCGTTCAT TCACGGAAGTACAGCTTCAGCGTGGCTGCGATGGCGTTCAT < 41bp 0.511893380095083 0.787794270047037 0.23210987 0.51010513 prediction 0.551801779903909 Functional Gain - POM121L9P ENSG00000128262;ENSG00000225098 ncRNA_exonic Human other chr22:24658473 chr22:24658477 . . 0 25 hm5C_associated_SNPs_104269 0 0 0 0 1 unknown 0.500231657974489 0.500231646620514 0.02021026 0 hm5C_site_57414 DeepMRMD:0.02021026;iRNA_m5C:0 57415 chr10 115805333 115805333 1 + C A rs55637433 115805329 + 115805309 115805349 41 CGGAATCCAAGGTGTAGGGCCCGGCGCGGGGCGCGGACTCC CGGAATCCAAGGTGTAGGGCCCGGAGCGGGGCGCGGACTCC < 41bp 0.602993732472925 0.878873302015204 0.42211246 0.658021 prediction 0.551759139084557 Functional Gain - ADRB1 ENSG00000043591 UTR3 Human protein_coding chr10:115805329 chr10:115805333 . . 0 25 hm5C_associated_SNPs_104270 0 0 0 0 0 Nucleus 0.500231643921107 0.500231643921092 0.316042 0 hm5C_site_57415 DeepMRMD:0.316042;iRNA_m5C:0 57416 chr19 4497986 4497986 1 + T G UCEC 4497983 + 4497963 4498003 41 AGGTGGAGCGGACCCGGAAGCGGTCCGAGGGCTTCTCGATG AGGTGGAGCGGACCCGGAAGCGGGCCGAGGGCTTCTCGATG < 41bp 0.384702249168468 0.77587830839768 0.3714679 0.90998375 prediction 0.551756616795361 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4497983 chr19:4497986 nonsynonymous SNV 0.870 0 24 hm5C_associated_SNPs_104271 0 0 1 0 2 unknown 0.500231653188393 0.500231643921136 0.8199675 0 hm5C_site_57416 DeepMRMD:0.8199675;iRNA_m5C:0 57417 chrX 142121947 142121947 1 + C A LUAD 142121943 + 142121923 142121963 41 CAAATCAACTGGAGAATAACCAGCCTACAGAGAGCTCCACT CAAATCAACTGGAGAATAACCAGCATACAGAGAGCTCCACT < 41bp 0.628540914979105 0.904402252374246 0.71703255 0.25403553 prediction 0.551722674790283 Functional Gain - SPANXN4 ENSG00000189326 CDS Human protein_coding chrX:142121943 chrX:142121947 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_104272 0 0 0 0 0 exosome 0.500231643920931 0.500231630538673 0 0 hm5C_site_57417 DeepMRMD:0;iRNA_m5C:0 57418 chr17 51901021 51901021 1 + G C HNSC 51901025 - 51901005 51901045 41 GCAGACGCAGATGCGATGTTCTTGCGGGGGCTCCAGGACTG GCAGACGCAGATGCGATGTTCTTGGGGGGGCTCCAGGACTG < 41bp 0.511341205588406 0.787180093733105 0.15437329 0.3527341 prediction 0.551677776289398 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901025 chr17:51901021 synonymous SNV . 0 25 hm5C_associated_SNPs_104273 0 0 0 0 1 exosome 0.50023164391015 0.500231644148164 0 4.76028327867084e-10 hm5C_site_57418 DeepMRMD:0;iRNA_m5C:4.76028327867084e-10 57419 chr4 56230429 56230429 1 + G C LUAD 56230433 - 56230413 56230453 41 GCTGGATCCACTCACCATTCCTGCCATCCATTGGCACTTGG GCTGGATCCACTCACCATTCCTGCGATCCATTGGCACTTGG < 41bp 0.491204681893545 0.775833528764912 0.13457644 0.1324848 prediction 0.551667057529824 Functional Gain - SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56230433 chr4:56230429 nonsynonymous SNV 0.865 0 25 hm5C_associated_SNPs_104274 0 0 0 0 0 Ribosome 0.500231643921061 0.500231664835858 0 4.18295951210013e-08 hm5C_site_57419 DeepMRMD:0;iRNA_m5C:4.18295951210013e-08 57420 chr4 57340534 57340534 1 + T C STAD 57340532 + 57340512 57340552 41 CAAGGCCAGCTGAACCAGGCCATGAAAATCCTACAAAAAGC CAAGGCCAGCTGAACCAGGCCACGAAAATCCTACAAAAAGC < 41bp 0.502194679638178 0.777986844649626 0.01717621 0.0066018105 prediction 0.551584330022896 Functional Gain - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340532 chr4:57340534 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_104275 0 0 1 0 2 Cytosol 0.50023163992969 0.500231556770416 0 0 hm5C_site_57420 DeepMRMD:0;iRNA_m5C:0 57421 chr1 248059039 248059039 1 + C G LUAD 248059035 + 248059015 248059055 41 ACCACCATCATCCTGGTGTCCCGGCTGGACCCCCACCTCCA ACCACCATCATCCTGGTGTCCCGGGTGGACCCCCACCTCCA < 41bp 0.53400137230028 0.809787571299265 0.79736537 0.96394426 prediction 0.55157239799797 Functional Gain - OR2W3 ENSG00000238243 CDS Human protein_coding chr1:248059035 chr1:248059039 nonsynonymous SNV 0.590 0 25 hm5C_associated_SNPs_104276 0 0 0 0 0 exosome 0.500231722682411 0.500231556869989 0.33315778 0 hm5C_site_57421 DeepMRMD:0.33315778;iRNA_m5C:0 57422 chr1 151006539 151006539 1 + C A rs3738476 151006535 + 151006515 151006555 41 GGCAAGTAACTCCCTGATTTCTGGCCTGAGTCAAGATGAGG GGCAAGTAACTCCCTGATTTCTGGACTGAGTCAAGATGAGG < 41bp 0.622091903832911 0.897871661961573 0.12662438 0.1589166 prediction 0.551559516257324 Functional Gain - PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:151006535 chr1:151006539 synonymous SNV . 0 25 hm5C_associated_SNPs_104277 0 0 1 0 0 chromatin 0.500231643921813 0.500231644038143 0 2.32659669308077e-10 hm5C_site_57422 DeepMRMD:0;iRNA_m5C:2.32659669308077e-10 57423 chr4 8477562 8477562 1 + C G rs139858049 8477561 + 8477541 8477581 41 CACTGTGGAAGACAAAGCAACCGGAAGCGAAACAGAGACTG CACTGTGGAAGACAAAGCAACGGGAAGCGAAACAGAGACTG < 41bp 0.542305922377155 0.818084895782476 0.33367613 0.73643583 prediction 0.551557946810642 Functional Gain - TRMT44 ENSG00000155275 CDS Human protein_coding chr4:8477561 chr4:8477562 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_104278 0 0 0 0 1 Cytosol 0.50023164392177 0.500231643921092 0.47287166 0 hm5C_site_57423 DeepMRMD:0.47287166;iRNA_m5C:0 57424 chr11 64981837 64981837 1 + C A rs12420456 64981833 + 64981813 64981853 41 AGGCCCGCACTCTCCGAGACCTGGCGCAGTCCGTCTACATG AGGCCCGCACTCTCCGAGACCTGGAGCAGTCCGTCTACATG < 41bp 0.559855386617325 0.835629226940287 0.26128387 0.46285558 prediction 0.551547680645924 Functional Gain - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64981833 chr11:64981837 . . 0 25 hm5C_associated_SNPs_104279 0 0 0 0 2 unknown 0.500280941179116 0.500231644060636 0 0 hm5C_site_57424 DeepMRMD:0;iRNA_m5C:0 57425 chrX 38546900 38546900 1 + C A LUSC 38546896 + 38546876 38546916 41 CTGTCTGTCCCGGTTCATCACGGCCAATCAGTATGAGATGG CTGTCTGTCCCGGTTCATCACGGCAAATCAGTATGAGATGG < 41bp 0.640053801667103 0.915820513026313 0.5244485 0.4968378 prediction 0.55153342271842 Functional Gain - TSPAN7 ENSG00000156298;ENSG00000250349 CDS Human other chrX:38546896 chrX:38546900 synonymous SNV . 0 25 hm5C_associated_SNPs_104280 0 0 1 0 2 Ribosome 0.500231643920955 0.500231643921086 0 2.61124455391837e-13 hm5C_site_57425 DeepMRMD:0;iRNA_m5C:2.61124455391837e-13 57426 chr5 140531709 140531709 1 + C A HNSC 140531705 + 140531685 140531725 41 GGGCGCACAATGGCGAGGTGCGCACCGCCAGGCTGCTGAGC GGGCGCACAATGGCGAGGTGCGCAACGCCAGGCTGCTGAGC < 41bp 0.381822985299485 0.775765677451048 0.18179953 0.4324753 prediction 0.551531354902095 Functional Gain - PCDHB6 ENSG00000113211 CDS Human protein_coding chr5:140531705 chr5:140531709 nonsynonymous SNV 0.820 3 25 hm5C_associated_SNPs_104281 0 0 0 0 0 exosome 0.500231644010204 0.500231643921575 0 0 hm5C_site_57426 DeepMRMD:0;iRNA_m5C:0 57427 chr1 200996843 200996843 1 + C G rs10920097 200996842 + 200996822 200996862 41 GGCACGAGAATCGGTTGAACCCGGGAGGTGGAGATTTCAGT GGCACGAGAATCGGTTGAACCGGGGAGGTGGAGATTTCAGT < 41bp 0.490870651781504 0.775765072395025 0.9036677 0.92396665 prediction 0.55153014479005 Functional Gain - KIF21B;CACNA1S ENSG00000229191 ncRNA_exonic Human antisense chr1:200996842 chr1:200996843 . . 0 22 hm5C_associated_SNPs_104282 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.0405979000000001 0 hm5C_site_57427 DeepMRMD:0.0405979000000001;iRNA_m5C:0 57428 chrX 106456221 106456221 1 + T A SARC 106456217 + 106456197 106456237 41 CTCTGGAAGCCCTCTCTAAGCTACTTAATCCTGAAGAAGAG CTCTGGAAGCCCTCTCTAAGCTACATAATCCTGAAGAAGAG < 41bp 0.571957849327574 0.847705189701915 0.01793164 0.051212758 prediction 0.551494680748682 Functional Gain - PIH1D3 ENSG00000080572 CDS Human protein_coding chrX:106456217 chrX:106456221 nonsynonymous SNV 0.393 3 25 hm5C_associated_SNPs_104283 0 0 0 0 1 unknown 0.500231643921123 0.500231643921108 0 0 hm5C_site_57428 DeepMRMD:0;iRNA_m5C:0 57429 chr4 42403085 42403085 1 + C G HNSC 42403084 + 42403064 42403104 41 ATCTTCATTGCGTTCATCATCCTGGGCTCTGTAGTGGCTAT ATCTTCATTGCGTTCATCATCGTGGGCTCTGTAGTGGCTAT < 41bp 0.478023116507522 0.775745816193466 0.784516 0.9251313 prediction 0.551491632386933 Functional Gain - SHISA3 ENSG00000178343 CDS Human protein_coding chr4:42403084 chr4:42403085 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_104284 0 0 1 0 1 exosome 0.500231643921092 0.500231643921109 0.2812306 3.24185123190546e-14 hm5C_site_57429 DeepMRMD:0.2812306;iRNA_m5C:3.24185123190546e-14 57430 chr17 40818390 40818390 1 + T G PRAD 40818388 + 40818368 40818408 41 GAACGGAAGTTGGCCAACTTCATCCCGTGGGGCCCCGCCAG GAACGGAAGTTGGCCAACTTCAGCCCGTGGGGCCCCGCCAG < 41bp 0.438147330226956 0.775744648411741 0.26341712 0.5059795 prediction 0.551489296823481 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818388 chr17:40818390 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_104285 0 0 0 0 1 Cytosol 0.500231643934226 0.500231643921092 0.0119590000000001 0 hm5C_site_57430 DeepMRMD:0.0119590000000001;iRNA_m5C:0 57431 chr20 23472354 23472354 1 + C A LUAD 23472350 + 23472330 23472370 41 TGATCCTCCTCACCATTCCCCTGGCCCTGGTGGCCAGGAAA TGATCCTCCTCACCATTCCCCTGGACCTGGTGGCCAGGAAA < 41bp 0.376704511597095 0.775727206896657 0.34567225 0.49354756 prediction 0.551454413793314 Functional Gain - CST8 ENSG00000125815 CDS Human protein_coding chr20:23472350 chr20:23472354 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_104286 0 0 0 0 0 exosome 0.500231676044618 0.500240985810089 0 1.86195309419546e-05 hm5C_site_57431 DeepMRMD:0;iRNA_m5C:1.86195309419546e-05 57432 chr5 132150516 132150516 1 + C G rs372218297 132150515 + 132150495 132150535 41 GCACGGCCACGAGGACGCTGCCGTGCTGCTGGTGGTGCGTC GCACGGCCACGAGGACGCTGCGGTGCTGCTGGTGGTGCGTC < 41bp 0.471944936065529 0.775707704572026 0.35624906 0.58186525 prediction 0.551415409144052 Functional Gain - SOWAHA ENSG00000198944 CDS Human protein_coding chr5:132150515 chr5:132150516 synonymous SNV . 0 22 hm5C_associated_SNPs_104287 0 0 0 0 0 exosome 0.500231643445551 0.500221530124728 0.1637305 0 hm5C_site_57432 DeepMRMD:0.1637305;iRNA_m5C:0 57433 chr11 103907617 103907617 1 + C A STAD 103907613 + 103907593 103907633 41 GTCACCTTCTCTCTCCAGGTCAGCCCCGACTTTGAGCTCCG GTCACCTTCTCTCTCCAGGTCAGCACCGACTTTGAGCTCCG < 41bp 0.384000334290024 0.775702868803439 0.043878198 0.050634056 prediction 0.551405737606878 Functional Gain - DDI1 ENSG00000170962;ENSG00000170967 CDS Human other chr11:103907613 chr11:103907617 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_104288 0 0 0 0 0 exosome 0.500231643921092 0.500231643921098 0 1.17683640610267e-14 hm5C_site_57433 DeepMRMD:0;iRNA_m5C:1.17683640610267e-14 57434 chr13 43148546 43148546 1 + C G rs138818878 43148545 + 43148525 43148565 41 CCCTGCACGCCCCGCCGCCGCCTGCGCCGCACCAGCCCCCT CCCTGCACGCCCCGCCGCCGCGTGCGCCGCACCAGCCCCCT < 41bp 0.490473709224262 0.775702346344155 0.06905219 0.201848 prediction 0.551404692688309 Functional Gain - TNFSF11 ENSG00000120659 CDS Human protein_coding chr13:43148545 chr13:43148546 nonsynonymous SNV 0.014 0 22 hm5C_associated_SNPs_104289 1 1 0 0 0 exosome 0.500231643921026 0.500231643921076 0 1.00808250635964e-13 hm5C_site_57434 DeepMRMD:0;iRNA_m5C:1.00808250635964e-13 Osteopetrosis Osteopetrosis 57435 chr11 75438611 75438611 1 + T A LUAD 75438607 + 75438587 75438627 41 AGGCTTCTCTTCGATCTTCCCCGGTATCCGCCCCCATCTGA AGGCTTCTCTTCGATCTTCCCCGGAATCCGCCCCCATCTGA < 41bp 0.5643322506586 0.840024814236233 0.18451712 0.56572866 prediction 0.551385127155267 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75438607 chr11:75438611 synonymous SNV . 0 25 hm5C_associated_SNPs_104290 0 0 0 0 1 exosome 0.500231643921093 0.500231643921093 0.13145732 1.55431223447522e-15 hm5C_site_57435 DeepMRMD:0.13145732;iRNA_m5C:1.55431223447522e-15 57436 chr16 55703603 55703603 1 + T C UCEC 55703601 + 55703581 55703621 41 GTTTGGAAAATCTGCCCATTCTTCAAAGGTAAAGAAGGGGT GTTTGGAAAATCTGCCCATTCTCCAAAGGTAAAGAAGGGGT < 41bp 0.495876149328029 0.775667369672267 0.13869336 0.95549494 prediction 0.551334739344533 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55703601 chr16:55703603 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_104291 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.91098988 0 hm5C_site_57436 DeepMRMD:0.91098988;iRNA_m5C:0 57437 chr11 63994380 63994380 1 + T G LUSC 63994378 + 63994358 63994398 41 GCTCCTGCGCCTGGGCCTTACTTCCTACCGAGACTTCCTGG GCTCCTGCGCCTGGGCCTTACTGCCTACCGAGACTTCCTGG < 41bp 0.438345930107649 0.775660706059666 0.14395869 0.19231954 prediction 0.551321412119331 Functional Gain - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63994378 chr11:63994380 nonsynonymous SNV 0.938 1 23 hm5C_associated_SNPs_104292 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921089 0 0 hm5C_site_57437 DeepMRMD:0;iRNA_m5C:0 57438 chr15 85438181 85438181 1 + C G rs144931395 85438177 + 85438157 85438197 41 GTCTCATCCCCCAGGGCTCTCTGCCTTCCTGCTGGTGGCCT GTCTCATCCCCCAGGGCTCTCTGCGTTCCTGCTGGTGGCCT < 41bp 0.482061549489811 0.775659054294979 0.114307016 0.28920847 prediction 0.551318108589958 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85438177 chr15:85438181 synonymous SNV . 0 25 hm5C_associated_SNPs_104293 0 0 1 0 1 Endoplasmic reticulum 0.500231643713883 0.500231643769717 0 1.11667564084428e-10 hm5C_site_57438 DeepMRMD:0;iRNA_m5C:1.11667564084428e-10 57439 chrX 57405163 57405163 1 + T C rs4826543 57405161 + 57405141 57405181 41 TGTGCACTGGTCCTATGTGCCGTTATGCTGAAGACCTGGCC TGTGCACTGGTCCTATGTGCCGCTATGCTGAAGACCTGGCC < 41bp 0.497433400358187 0.775629151665165 0.036847085 0.03652647 prediction 0.551258303330329 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57405161 chrX:57405163 synonymous SNV . 0 23 hm5C_associated_SNPs_104294 0 0 0 0 2 nucleus 0.500231647148698 0.500232043117718 0 7.91938040256568e-07 hm5C_site_57439 DeepMRMD:0;iRNA_m5C:7.91938040256568e-07 57440 chr7 150069548 150069548 1 + C G rs187957325 150069547 + 150069527 150069567 41 GGAGCGGCCCTTCACCTGCGCCGAGTGCGGGAAGAACTTCG GGAGCGGCCCTTCACCTGCGCGGAGTGCGGGAAGAACTTCG < 41bp 0.534378953968018 0.810005455915422 0.34013134 0.7696005 prediction 0.551253003894808 Functional Gain - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150069547 chr7:150069548 synonymous SNV . 0 22 hm5C_associated_SNPs_104295 0 0 1 0 0 Endoplasmic reticulum 0.500231643921096 0.500231643921092 0.539201 0 hm5C_site_57440 DeepMRMD:0.539201;iRNA_m5C:0 57441 chr10 133983465 133983465 1 + C A rs114707888 133983461 + 133983441 133983481 41 GTGGTGGACGAGGCGGCGTCCTCGCGGGGTCGGGACCTGGG GTGGTGGACGAGGCGGCGTCCTCGAGGGGTCGGGACCTGGG < 41bp 0.419877658277877 0.775614872049804 0.30271745 0.4299128 prediction 0.551229744099607 Functional Gain - JAKMIP3 ENSG00000188385 UTR3 Human protein_coding chr10:133983461 chr10:133983465 . . 0 25 hm5C_associated_SNPs_104296 0 0 1 0 0 Cytosol 0.500447351965865 0.500340893674578 0 0 hm5C_site_57441 DeepMRMD:0;iRNA_m5C:0 57442 chr2 96933131 96933131 1 + C G OV 96933130 + 96933110 96933150 41 TGCGGAAGGTAGCCTGGTCCCCCTGCGGTAATTACCTGGCC TGCGGAAGGTAGCCTGGTCCCGCTGCGGTAATTACCTGGCC < 41bp 0.472337592945242 0.775613678330145 0.23726064 0.5802404 prediction 0.55122735666029 Functional Gain - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933130 chr2:96933131 nonsynonymous SNV 0.948 4 22 hm5C_associated_SNPs_104297 0 0 1 0 2 Ribosome 0.500231643921101 0.500231643962893 0.1604808 8.35835844981148e-11 hm5C_site_57442 DeepMRMD:0.1604808;iRNA_m5C:8.35835844981148e-11 57443 chr17 42254298 42254298 1 + C G rs141590219 42254297 + 42254277 42254317 41 GAACACGGCGTGCGCTGGGGCCGAGGGCCCAGGTAGCTGCA GAACACGGCGTGCGCTGGGGCGGAGGGCCCAGGTAGCTGCA < 41bp 0.471868647713386 0.775604040946781 0.54843885 0.90007985 prediction 0.551208081893563 Functional Gain - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42254297 chr17:42254298 synonymous SNV . 0 22 hm5C_associated_SNPs_104298 0 0 0 0 1 Nucleus 0.500231643911474 0.500231643921092 0.703282 1.92355020800505e-11 hm5C_site_57443 DeepMRMD:0.703282;iRNA_m5C:1.92355020800505e-11 57444 chr16 3187363 3187363 1 + T A UCEC 3187359 + 3187339 3187379 41 ATTGTGAAAGTGGAAGATTCCTCCTGGGAACAGGAATCTGC ATTGTGAAAGTGGAAGATTCCTCCAGGGAACAGGAATCTGC < 41bp 0.573434036843951 0.84903300636271 0.15473676 0.89376736 prediction 0.551197939037517 Functional Gain - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3187359 chr16:3187363 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_104299 0 0 0 0 0 chromatin 0.500231643920326 0.500231644090645 0.78753472 3.40638184326281e-10 hm5C_site_57444 DeepMRMD:0.78753472;iRNA_m5C:3.40638184326281e-10 57445 chrX 140995303 140995303 1 + C A STAD 140995299 + 140995279 140995319 41 AGTCCTCTTGAGGGAGAGGACTCCCTGTCTTCTCTCCATTT AGTCCTCTTGAGGGAGAGGACTCCATGTCTTCTCTCCATTT < 41bp 0.365813960768178 0.775598134635229 0.029377252 0.941826 prediction 0.551196269270459 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140995299 chrX:140995303 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_104300 0 0 1 0 0 exosome 0.500231643921093 0.500231643921093 0.883652 0 hm5C_site_57445 DeepMRMD:0.883652;iRNA_m5C:0 57446 chr20 61461738 61461738 1 + C G rs557569181 61461737 + 61461717 61461757 41 CCTCGGCCCACAAGGCCCTCCCGGAGCCCCTGGTGTCCGAG CCTCGGCCCACAAGGCCCTCCGGGAGCCCCTGGTGTCCGAG < 41bp 0.559755372727275 0.835342047338147 0.92136025 0.9243486 prediction 0.551173349221744 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61461737 chr20:61461738 synonymous SNV . 0 22 hm5C_associated_SNPs_104301 0 0 1 0 2 Cytosol 0.500231643918483 0.500231643921092 0.00597669999999995 5.21893639415794e-12 hm5C_site_57446 DeepMRMD:0.00597669999999995;iRNA_m5C:5.21893639415794e-12 57447 chr16 54966542 54966542 1 + C G ESCA 54966541 + 54966521 54966561 41 ACAAGGGACGCCACGGCTACCCTCAAGGCCTGGCTCAACGA ACAAGGGACGCCACGGCTACCGTCAAGGCCTGGCTCAACGA < 41bp 0.471249715505463 0.775586405178807 0.064967245 0.099963814 prediction 0.551172810357613 Functional Gain - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54966541 chr16:54966542 nonsynonymous SNV 0.628 5 22 hm5C_associated_SNPs_104302 0 0 0 0 0 exosome 0.500231643921096 0.500231643921153 0 1.15019105351166e-13 hm5C_site_57447 DeepMRMD:0;iRNA_m5C:1.15019105351166e-13 57448 chr18 55398906 55398906 1 + T G rs146599962 55398903 + 55398883 55398923 41 CCTCTGCTTCCCTGTTGACTCGGTTTTGTTCTGGTTCAACA CCTCTGCTTCCCTGTTGACTCGGGTTTGTTCTGGTTCAACA < 41bp 0.397478665945181 0.775572673704696 0.14054558 0.65076286 prediction 0.551145347409392 Functional Gain - ATP8B1 ENSG00000081923 CDS Human protein_coding chr18:55398903 chr18:55398906 nonsynonymous SNV 0.947 1 24 hm5C_associated_SNPs_104303 1 0 0 0 0 Ribosome 0.500231643921916 0.500231643918425 0.30152572 0 hm5C_site_57448 DeepMRMD:0.30152572;iRNA_m5C:0 not specified not specified 57449 chrX 144909468 144909468 1 + C A LUAD 144909464 + 144909444 144909484 41 TCAGCACAGCAAAATGGTTCCAGCCTACAGAATGCAGTCTC TCAGCACAGCAAAATGGTTCCAGCATACAGAATGCAGTCTC < 41bp 0.617671994846019 0.89324330360373 0.2132481 0.30229348 prediction 0.551142617515422 Functional Gain - TMEM257 ENSG00000221870 CDS Human protein_coding chrX:144909464 chrX:144909468 synonymous SNV . 0 25 hm5C_associated_SNPs_104304 0 0 0 0 0 unknown 0.500231036435234 0.500231656366194 0 1.2398619206877e-06 hm5C_site_57449 DeepMRMD:0;iRNA_m5C:1.2398619206877e-06 57450 chr12 55846071 55846071 1 + T A LUSC 55846067 + 55846047 55846087 41 GTGACCCACACCTGCAAGTTCTGCTTTTTATCTTTCTATTT GTGACCCACACCTGCAAGTTCTGCATTTTATCTTTCTATTT < 41bp 0.522838013122903 0.798407295152974 0.023991764 0.042580754 prediction 0.551138564060142 Functional Gain - OR6C2 ENSG00000179695 CDS Human protein_coding chr12:55846067 chr12:55846071 nonsynonymous SNV 0.037 2 25 hm5C_associated_SNPs_104305 0 0 0 0 0 unknown 0.500231643930538 0.500231643992528 0 1.23979937427521e-10 hm5C_site_57450 DeepMRMD:0;iRNA_m5C:1.23979937427521e-10 57451 chr16 84225198 84225198 1 + C G rs529653331 84225194 + 84225174 84225214 41 CCAGCCAGGCCGTGTCCTTGCTCACGGAGTACGCGGCCAGC CCAGCCAGGCCGTGTCCTTGCTCAGGGAGTACGCGGCCAGC < 41bp 0.50877593367036 0.784334079102117 0.039968878 0.052339286 prediction 0.551116290863513 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84225194 chr16:84225198 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_104306 0 0 0 0 1 exosome 0.500231643921093 0.500231643920713 0 0 hm5C_site_57451 DeepMRMD:0;iRNA_m5C:0 57452 chr2 71891424 71891424 1 + C A UCEC 71891420 + 71891400 71891440 41 TGTTCGAGCTGACCTGCACTCTGCCTCTGGAGAAGGACCTA TGTTCGAGCTGACCTGCACTCTGCATCTGGAGAAGGACCTA < 41bp 0.416523102273144 0.775557400846596 0.15579528 0.26180166 prediction 0.551114801693191 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71891420 chr2:71891424 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_104307 0 0 0 0 1 Nucleus 0.500231643921107 0.500231643934812 0 2.74114064779951e-11 hm5C_site_57452 DeepMRMD:0;iRNA_m5C:2.74114064779951e-11 57453 chr14 20692166 20692166 1 + C A LUAD 20692162 + 20692142 20692182 41 ATTTCCTCCACTGTCCCAAACATGCTAGTCAATATCCTCTC ATTTCCTCCACTGTCCCAAACATGATAGTCAATATCCTCTC < 41bp 0.393743443766926 0.775548198844367 0.050074846 0.06683716 prediction 0.551096397688734 Functional Gain - OR11H6 ENSG00000176219 CDS Human protein_coding chr14:20692162 chr14:20692166 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_104308 0 0 0 0 0 unknown 0.500231643998524 0.500231644618535 0 1.24002208501395e-09 hm5C_site_57453 DeepMRMD:0;iRNA_m5C:1.24002208501395e-09 57454 chr20 307691 307691 1 + C A rs531229417 307687 + 307667 307707 41 ATGCCCCTCCCCCGCAGACACACCCCAAGGCAGCCCAACCC ATGCCCCTCCCCCGCAGACACACCACAAGGCAGCCCAACCC < 41bp 0.398805018850089 0.775530481081755 0.005481869 0.032534868 prediction 0.551060962163509 Functional Gain - SOX12 ENSG00000225377 ncRNA_intronic Human antisense chr20:307687 chr20:307691 . . 0 25 hm5C_associated_SNPs_104309 0 0 1 0 0 Ribosome 0.500231652038008 0.50023164393529 0 0 hm5C_site_57454 DeepMRMD:0;iRNA_m5C:0 57455 chr4 52943089 52943089 1 + C A HNSC 52943085 + 52943065 52943105 41 GTCCAATGTGGCGCGCAAGGCTGCCCTCTTGTCCCGGTTCA GTCCAATGTGGCGCGCAAGGCTGCACTCTTGTCCCGGTTCA < 41bp 0.645727202026627 0.921255158593434 0.10618812 0.24094582 prediction 0.551055913133614 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52943085 chr4:52943089 synonymous SNV . 0 25 hm5C_associated_SNPs_104310 0 0 1 0 0 cytosol 0.500231643921092 0.500231643921063 0 0 hm5C_site_57455 DeepMRMD:0;iRNA_m5C:0 57456 chr7 30634661 30634661 1 + C A rs1049402 30634657 + 30634637 30634677 41 CGGTCCCTCAGCGCGGCCTCCTGCCCCCCGATCTCCTTGCC CGGTCCCTCAGCGCGGCCTCCTGCACCCCGATCTCCTTGCC < 41bp 0.628048206205945 0.903571338678933 0.46837783 0.26266056 prediction 0.551046264945975 Functional Gain - GARS ENSG00000106105 CDS Human protein_coding chr7:30634657 chr7:30634661 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_104311 0 0 1 0 1 Cytosol 0.50023241052291 0.500231643921093 0 0 hm5C_site_57456 DeepMRMD:0;iRNA_m5C:0 57457 chr16 89631176 89631176 1 + T G rs553927482 89631174 + 89631154 89631194 41 CAACCTGGCTGAAGACTGGCCGTGGGGGGTGCAGGGGTCTC CAACCTGGCTGAAGACTGGCCGGGGGGGGTGCAGGGGTCTC < 41bp 0.562883056007692 0.838401824924785 0.5219248 0.9095522 prediction 0.551037537834186 Functional Gain - RPL13 ENSG00000167526 downstream Human protein_coding chr16:89631174 chr16:89631176 . . 0 23 hm5C_associated_SNPs_104312 0 0 1 0 0 Cytosol 0.500231643920414 0.500231644042533 0.7752548 2.44237741142683e-10 hm5C_site_57457 DeepMRMD:0.7752548;iRNA_m5C:2.44237741142683e-10 57458 chr6 155578056 155578056 1 + A C GBM 155578059 - 155578039 155578079 41 TCTTGGTGCTGTTGGCTTTTCGTTTAATGGGGCAGAAGTGC TCTTGGTGCTGTTGGCTTTTCGTGTAATGGGGCAGAAGTGC < 41bp 0.414962115198746 0.775499962409429 0.20356432 0.35177886 prediction 0.550999924818858 Functional Gain - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155578059 chr6:155578056 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_104313 0 0 1 0 0 Cytosol 0.500231643536481 0.500234539916888 0 5.79276081458246e-06 hm5C_site_57458 DeepMRMD:0;iRNA_m5C:5.79276081458246e-06 57459 chr4 111398156 111398156 1 + C A LGG 111398152 + 111398132 111398172 41 CTGACCATGGAGTTCGCCGGCTGGCTGAACGGCTCCCTCGT CTGACCATGGAGTTCGCCGGCTGGATGAACGGCTCCCTCGT < 41bp 0.632776667997679 0.908270205302448 0.36873162 0.71814454 prediction 0.550987074609536 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111398152 chr4:111398156 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_104314 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.43628908 0 hm5C_site_57459 DeepMRMD:0.43628908;iRNA_m5C:0 57460 chr17 38420865 38420865 1 + C G rs201690626 38420864 + 38420844 38420884 41 ACAGCAGCCGGGCCTCACTCCCAGAACTGCCCCGGATGCAG ACAGCAGCCGGGCCTCACTCCGAGAACTGCCCCGGATGCAG < 41bp 0.5546399648154 0.830133279954478 0.44801685 0.83771145 prediction 0.550986630278157 Functional Gain - WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38420864 chr17:38420865 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_104315 0 0 0 0 0 Ribosome 0.500231643921212 0.500231643924782 0.6754229 7.13895609294468e-12 hm5C_site_57460 DeepMRMD:0.6754229;iRNA_m5C:7.13895609294468e-12 57461 chr8 10557880 10557880 1 + C A STAD 10557876 + 10557856 10557896 41 AAGAAGACTCTGAACCTCAACGCCCCCACCCCTATCCCGCC AAGAAGACTCTGAACCTCAACGCCACCACCCCTATCCCGCC < 41bp 0.359760562745548 0.775461528534911 0.0101056695 0.038456887 prediction 0.550923057069822 Functional Gain - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10557876 chr8:10557880 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_104316 0 0 0 0 0 unknown 0.500232000488076 0.500231643920587 0 0 hm5C_site_57461 DeepMRMD:0;iRNA_m5C:0 57462 chr16 31422791 31422791 1 + C G LUSC 31422787 + 31422767 31422807 41 CAGGAGAACCGGGGTGCTGTCTACCTGTTTCACGGAGCCTC CAGGAGAACCGGGGTGCTGTCTACGTGTTTCACGGAGCCTC < 41bp 0.517198965390263 0.792658725265829 0.2875697 0.7251073 prediction 0.550919519751133 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422787 chr16:31422791 nonsynonymous SNV 0.858 0 25 hm5C_associated_SNPs_104317 0 0 0 0 1 nucleolus 0.500231643921092 0.500231643921092 0.4502146 0 hm5C_site_57462 DeepMRMD:0.4502146;iRNA_m5C:0 57463 chr11 44952040 44952040 1 + C G rs4755919 44952039 + 44952019 44952059 41 TCTCTCCAGGCTAAAGAATCCCGAAGGCATCGAGGCCATTT TCTCTCCAGGCTAAAGAATCCGGAAGGCATCGAGGCCATTT < 41bp 0.523688481377668 0.799147824380869 0.8822804 0.92820406 prediction 0.550918686006403 Functional Gain - TSPAN18 ENSG00000157570 UTR3 Human protein_coding chr11:44952039 chr11:44952040 . . 0 22 hm5C_associated_SNPs_104318 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.0918473200000001 0 hm5C_site_57463 DeepMRMD:0.0918473200000001;iRNA_m5C:0 57464 chr2 69002401 69002401 1 + C A LUAD 69002397 + 69002377 69002417 41 GCGAGCAGATGGCTGCCTTCCATCCATCGTCCACCCCCAAC GCGAGCAGATGGCTGCCTTCCATCAATCGTCCACCCCCAAC < 41bp 0.359996806159031 0.775457682987441 0.02339974 0.008023471 prediction 0.550915365974881 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69002397 chr2:69002401 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_104319 0 0 0 0 2 chromatin 0.500231601605975 0.500231738542702 0 2.73873453249251e-07 hm5C_site_57464 DeepMRMD:0;iRNA_m5C:2.73873453249251e-07 57465 chr17 18140250 18140250 1 + C G COAD 18140246 + 18140226 18140266 41 GATGGTGGTGGCTGGCACTGCAGGCCAGGTAGGGCTGGGTG GATGGTGGTGGCTGGCACTGCAGGGCAGGTAGGGCTGGGTG < 41bp 0.491055893768079 0.775457495144725 0.7216588 0.8617784 prediction 0.55091499028945 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18140246 chr17:18140250 synonymous SNV . 0 25 hm5C_associated_SNPs_104320 0 0 1 0 1 Cytosol 0.50023164370485 0.500231643923031 0.2802392 4.36362057598672e-10 hm5C_site_57465 DeepMRMD:0.2802392;iRNA_m5C:4.36362057598672e-10 57466 chr11 59807962 59807962 1 + T G SKCM 59807959 + 59807939 59807979 41 TTAGAAGTCTTGATGCTCCTCGCTGTCTTGATTTGGACCGG TTAGAAGTCTTGATGCTCCTCGCGGTCTTGATTTGGACCGG < 41bp 0.613992215625898 0.889433101230723 0.22536409 0.85797966 prediction 0.550881771209649 Functional Gain - OOSP2 ENSG00000149507 CDS Human protein_coding chr11:59807959 chr11:59807962 synonymous SNV . 0 24 hm5C_associated_SNPs_104321 0 0 0 0 1 unknown 0.500231624809461 0.500231643247743 0.71595932 3.68765642466684e-08 hm5C_site_57466 DeepMRMD:0.71595932;iRNA_m5C:3.68765642466684e-08 57467 chr11 120856867 120856867 1 + C G SKCM 120856866 + 120856846 120856886 41 CACGCACATCCGCGTCTGCCCCGAGTGCCGCCGCTTCCAGG CACGCACATCCGCGTCTGCCCGGAGTGCCGCCGCTTCCAGG < 41bp 0.514357730776626 0.789793291933144 0.71911395 0.9234357 prediction 0.550871122313036 Functional Gain - GRIK4 ENSG00000149403 CDS Human protein_coding chr11:120856866 chr11:120856867 synonymous SNV . 0 22 hm5C_associated_SNPs_104322 0 0 0 0 0 membrane 0.500231644014367 0.500231643824725 0.4086435 0 hm5C_site_57467 DeepMRMD:0.4086435;iRNA_m5C:0 57468 chr2 191745582 191745582 1 + C A rs537934249 191745578 + 191745558 191745598 41 TTAGGCGGAGCGAAGAGAACCGGTCGCGGCAATCCTAGCGC TTAGGCGGAGCGAAGAGAACCGGTAGCGGCAATCCTAGCGC < 41bp 0.582430399977549 0.857862072862691 0.7629529 0.8003741 prediction 0.550863345770284 Functional Gain - GLS ENSG00000235852 ncRNA_exonic Human antisense chr2:191745578 chr2:191745582 . . 0 25 hm5C_associated_SNPs_104323 0 0 1 0 0 Endoplasmic reticulum 0.500231643922792 0.500231643921093 0.0748423999999999 0 hm5C_site_57468 DeepMRMD:0.0748423999999999;iRNA_m5C:0 57469 chr1 177242663 177242663 1 + T A LUAD 177242659 + 177242639 177242679 41 ACCGGTCCTCTGGGCTGCAGCAACTATGACAATCTGGACTC ACCGGTCCTCTGGGCTGCAGCAACAATGACAATCTGGACTC < 41bp 0.572400930851318 0.847831586825404 0.16177264 0.080245495 prediction 0.550861311948172 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177242659 chr1:177242663 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104324 0 0 0 0 2 Nucleus 0.500231643921692 0.500231644962231 0 2.08107842070149e-09 hm5C_site_57469 DeepMRMD:0;iRNA_m5C:2.08107842070149e-09 57470 chr20 49575877 49575877 1 + C G MESO 49575873 + 49575853 49575893 41 TCAGGCCCTTACGCCAGCCACTGCCCTAGACCTGGTCCGCC TCAGGCCCTTACGCCAGCCACTGCGCTAGACCTGGTCCGCC < 41bp 0.496098534317362 0.775418819339903 0.2744636 0.40233827 prediction 0.550837638679806 Functional Gain - MOCS3 ENSG00000124217 CDS Human protein_coding chr20:49575873 chr20:49575877 synonymous SNV . 0 25 hm5C_associated_SNPs_104325 0 0 1 0 0 Nucleus 0.500231643921376 0.500231643946827 0 5.0901949322224e-11 hm5C_site_57470 DeepMRMD:0;iRNA_m5C:5.0901949322224e-11 57471 chr19 30314969 30314969 1 + C G rs118142197 30314968 + 30314948 30314988 41 CTACTTGACCTAAGGGACTCCCACAACAACAAAAGCTTGAA CTACTTGACCTAAGGGACTCCGACAACAACAAAAGCTTGAA < 41bp 0.491800986903546 0.775407252101467 0.3028159 0.5842488 prediction 0.550814504202935 Functional Gain - CCNE1 ENSG00000105173 UTR3 Human protein_coding chr19:30314968 chr19:30314969 . . 0 22 hm5C_associated_SNPs_104326 0 0 1 0 0 Ribosome 0.500231643878805 0.50023164405924 0.1684976 3.6086955645942e-10 hm5C_site_57471 DeepMRMD:0.1684976;iRNA_m5C:3.6086955645942e-10 57472 chr19 50902659 50902659 1 + C G rs2228665 50902655 + 50902635 50902675 41 CCCACCATCAGCCATAGATCCTCGCTGGCTTCGGCCCACAC CCCACCATCAGCCATAGATCCTCGGTGGCTTCGGCCCACAC < 41bp 0.496671095537893 0.775379468148798 0.709865 0.8717084 prediction 0.550758936297596 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50902655 chr19:50902659 synonymous SNV . 0 25 hm5C_associated_SNPs_104327 2 0 1 0 2 Nucleus 0.500231643934023 0.500231643879536 0.3236868 0 hm5C_site_57472 DeepMRMD:0.3236868;iRNA_m5C:0 not specified not specified 57473 chr6 73332155 73332155 1 + C A UCEC 73332151 + 73332131 73332171 41 GGCGGTGGCCTGAGGGAGAGCCGCCGGGGCAAGCAGGGGGC GGCGGTGGCCTGAGGGAGAGCCGCAGGGGCAAGCAGGGGGC < 41bp 0.579920815683847 0.855298058825482 0.8914101 0.89585924 prediction 0.55075448628327 Functional Gain - KCNQ5 ENSG00000185760 CDS Human protein_coding chr6:73332151 chr6:73332155 synonymous SNV . 0 25 hm5C_associated_SNPs_104328 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.00889827999999993 0 hm5C_site_57473 DeepMRMD:0.00889827999999993;iRNA_m5C:0 57474 chr15 102358623 102358623 1 + C A LIHC 102358619 + 102358599 102358639 41 TATGGCATTTTGCTCAATTACAGCCCCTAAGATGATTTGTG TATGGCATTTTGCTCAATTACAGCACCTAAGATGATTTGTG < 41bp 0.398640802865709 0.775376761585945 0.14191645 0.12959203 prediction 0.55075352317189 Functional Gain - OR4F15 ENSG00000182854 CDS Human protein_coding chr15:102358619 chr15:102358623 synonymous SNV . 0 25 hm5C_associated_SNPs_104329 0 0 0 0 0 unknown 0.500231643921054 0.500231643924356 0 6.60405063968028e-12 hm5C_site_57474 DeepMRMD:0;iRNA_m5C:6.60405063968028e-12 57475 chr19 45411116 45411116 1 + T G LGG 45411113 + 45411093 45411133 41 CGGCCAGCGCTGGGAACTGGCACTGGGTCGCTTTTGGGATT CGGCCAGCGCTGGGAACTGGCACGGGGTCGCTTTTGGGATT < 41bp 0.629809040419263 0.905172592161272 0.34980902 0.9200759 prediction 0.550727103484018 Functional Gain - APOE ENSG00000130203 CDS Human protein_coding chr19:45411113 chr19:45411116 nonsynonymous SNV 0.008 2 24 hm5C_associated_SNPs_104330 0 0 1 0 2 Cytosol 0.500231643921088 0.500231643921092 0.8401518 8.65973959207622e-15 hm5C_site_57475 DeepMRMD:0.8401518;iRNA_m5C:8.65973959207622e-15 57476 chrX 103359419 103359419 1 + T A UCEC 103359415 + 103359395 103359435 41 TGTATGCAAATAAGCAGGAGCGGCTTCCCAATTTCCTGGAG TGTATGCAAATAAGCAGGAGCGGCATCCCAATTTCCTGGAG < 41bp 0.459460251385996 0.775363320406871 0.014754772 0.05785629 prediction 0.550726640813741 Functional Gain - ZCCHC18 ENSG00000166707 CDS Human protein_coding chrX:103359415 chrX:103359419 nonsynonymous SNV 0.164 2 25 hm5C_associated_SNPs_104331 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57476 DeepMRMD:0;iRNA_m5C:0 57477 chr6 7861712 7861712 1 + C A LUAD 7861708 + 7861688 7861728 41 TCTGACCTGTTTTTGTTGGACACCCGTGTAGTATGGGCCTC TCTGACCTGTTTTTGTTGGACACCAGTGTAGTATGGGCCTC < 41bp 0.356405054590416 0.775350065089033 0.14568073 0.3514955 prediction 0.550700130178067 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7861708 chr6:7861712 nonsynonymous SNV 0.847 3 25 hm5C_associated_SNPs_104332 0 0 0 0 1 Ribosome 0.500231644003999 0.500231644878085 0 1.74817227360791e-09 hm5C_site_57477 DeepMRMD:0;iRNA_m5C:1.74817227360791e-09 57478 chr2 185803540 185803540 1 + C G HNSC 185803539 + 185803519 185803559 41 TTCCCAAATCCCAGCTCTCACCAGAACCTCATTACCTCAGC TTCCCAAATCCCAGCTCTCACGAGAACCTCATTACCTCAGC < 41bp 0.486488808688972 0.775330609306287 0.29366237 0.82244337 prediction 0.550661218612575 Functional Gain - ZNF804A ENSG00000170396 CDS Human protein_coding chr2:185803539 chr2:185803540 synonymous SNV . 0 22 hm5C_associated_SNPs_104333 0 0 0 0 0 nucleoplasm 0.500231584770605 0.500231656721294 0.64488674 1.43901376814526e-07 hm5C_site_57478 DeepMRMD:0.64488674;iRNA_m5C:1.43901376814526e-07 57479 chr14 68008639 68008639 1 + C A COAD 68008635 + 68008615 68008655 41 AGCGTAGACTGGCAGAAACGCTGCCTGACCCTGGAAACTCA AGCGTAGACTGGCAGAAACGCTGCATGACCCTGGAAACTCA < 41bp 0.351027632706654 0.775320976447427 0.107181996 0.11270508 prediction 0.550641952894855 Functional Gain - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68008635 chr14:68008639 nonsynonymous SNV 0.583 0 25 hm5C_associated_SNPs_104334 0 0 0 0 2 Endoplasmic reticulum 0.500231643920207 0.500231643921092 0 1.77124981348697e-12 hm5C_site_57479 DeepMRMD:0;iRNA_m5C:1.77124981348697e-12 57480 chr15 90808992 90808992 1 + C A rs375518801 90808988 + 90808968 90809008 41 GCTGGGCGGGCGCGTTTGCGCCGCCGTCACTCGCTGTGGGT GCTGGGCGGGCGCGTTTGCGCCGCAGTCACTCGCTGTGGGT < 41bp 0.602948061624471 0.878264455101688 0.7417786 0.80017483 prediction 0.550632786954434 Functional Gain - NGRN ENSG00000182768 CDS Human protein_coding chr15:90808988 chr15:90808992 synonymous SNV . 0 25 hm5C_associated_SNPs_104335 0 0 1 0 0 Ribosome 0.500231643921065 0.500226932161509 0.11679246 0 hm5C_site_57480 DeepMRMD:0.11679246;iRNA_m5C:0 57481 chr17 33318105 33318105 1 + C G BRCA 33318104 + 33318084 33318124 41 GTCGCATTTTTAACTGCAACCCAGATGATATGGCACGGGAC GTCGCATTTTTAACTGCAACCGAGATGATATGGCACGGGAC < 41bp 0.55619246228539 0.831480086150686 0.30000824 0.48115075 prediction 0.550575247730593 Functional Gain - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33318104 chr17:33318105 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_104336 0 0 1 0 1 Cytosol 0.500231636572696 0.500231643842223 0 1.4539055293028e-08 hm5C_site_57481 DeepMRMD:0;iRNA_m5C:1.4539055293028e-08 57482 chr4 15826613 15826613 1 + C A COAD 15826609 + 15826589 15826629 41 TAGGCTACCTTGCTGATGACCTCACATGGTGTGGTGAATTC TAGGCTACCTTGCTGATGACCTCAAATGGTGTGGTGAATTC < 41bp 0.358563969131138 0.775277217823095 0.08010185 0.8974427 prediction 0.55055443564619 Functional Gain - CD38 ENSG00000004468 CDS Human protein_coding chr4:15826609 chr4:15826613 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_104337 0 0 0 0 1 exosome 0.500231642779829 0.500224348583809 0.7948854 0 hm5C_site_57482 DeepMRMD:0.7948854;iRNA_m5C:0 57483 chr5 41918809 41918809 1 + C G rs188633883 41918808 + 41918788 41918828 41 GGTGGCCTCTCTCCCATTTCCCGCTGTGGCTGAGCCAAACT GGTGGCCTCTCTCCCATTTCCGGCTGTGGCTGAGCCAAACT < 41bp 0.514687944189506 0.789953284072259 0.062247604 0.80166364 prediction 0.550530679765506 Functional Gain - C5orf51 ENSG00000205765 UTR3 Human protein_coding chr5:41918808 chr5:41918809 . 0.024 0 22 hm5C_associated_SNPs_104338 0 0 1 0 0 chromatin 0.500231643914571 0.500231643920567 0.60332728 1.19910747997665e-11 hm5C_site_57483 DeepMRMD:0.60332728;iRNA_m5C:1.19910747997665e-11 57484 chr12 57167880 57167880 1 + C G BRCA 57167879 + 57167859 57167899 41 GACAGGCTGGAGACGGTGACCCTGGATGTTACCAAGATGGA GACAGGCTGGAGACGGTGACCGTGGATGTTACCAAGATGGA < 41bp 0.555205687434402 0.830458667269046 0.10012731 0.37703785 prediction 0.550505959669287 Functional Gain - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57167879 chr12:57167880 nonsynonymous SNV 0.945 5 22 hm5C_associated_SNPs_104339 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.50023164392109 0 0 hm5C_site_57484 DeepMRMD:0;iRNA_m5C:0 57485 chr16 29708604 29708604 1 + C A UCEC 29708600 + 29708580 29708620 41 AGTGGGGGCATCACCCTGGACAACCTCCCCCAGTTCTGCGG AGTGGGGGCATCACCCTGGACAACATCCCCCAGTTCTGCGG < 41bp 0.369620709578258 0.775250977296744 0.045087993 0.034889013 prediction 0.550501954593487 Functional Gain - QPRT ENSG00000103485 CDS Human protein_coding chr16:29708600 chr16:29708604 nonsynonymous SNV 0.589 2 25 hm5C_associated_SNPs_104340 0 0 1 0 1 Endoplasmic reticulum 0.500231643921093 0.500231643921092 0 0 hm5C_site_57485 DeepMRMD:0;iRNA_m5C:0 57486 chr16 28508245 28508245 1 + C G rs13306186 28508241 + 28508221 28508261 41 TCCCAGGAGCCTGGGAAAACCGCACGAGAAAGGACATGGAG TCCCAGGAGCCTGGGAAAACCGCAGGAGAAAGGACATGGAG < 41bp 0.51183732286179 0.787085194398569 0.4399692 0.5960975 prediction 0.550495743073559 Functional Gain - APOBR ENSG00000184730 CDS Human protein_coding chr16:28508241 chr16:28508245 nonsynonymous SNV 0.037 0 25 hm5C_associated_SNPs_104341 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.192195 0 hm5C_site_57486 DeepMRMD:0.192195;iRNA_m5C:0 57487 chr1 206626692 206626692 1 + C A UCEC 206626688 + 206626668 206626708 41 GGCCGGCACAATGGCATCGACGGACTCATCCCCCATCAGTA GGCCGGCACAATGGCATCGACGGAATCATCCCCCATCAGTA < 41bp 0.36852603679328 0.77524032429469 0.44827816 0.48788932 prediction 0.550480648589379 Functional Gain - SRGAP2 ENSG00000163486 CDS Human other chr1:206626688 chr1:206626692 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_104342 0 0 1 0 1 chromatin 0.500231711566749 0.500231643921092 0 0 hm5C_site_57487 DeepMRMD:0;iRNA_m5C:0 57488 chr2 69015032 69015032 1 + C A rs146399222 69015028 + 69015008 69015048 41 ATGTCCTCATGGCCAGCTCTCAGGCGGAGATGGAGGAGTGG ATGTCCTCATGGCCAGCTCTCAGGAGGAGATGGAGGAGTGG < 41bp 0.631300293046526 0.906526858805425 0.9095979 0.9107356 prediction 0.550453131517799 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69015028 chr2:69015032 nonsynonymous SNV 0.953 0 25 hm5C_associated_SNPs_104343 0 0 0 0 2 chromatin 0.500231645926607 0.500231642177553 0.00227540000000004 0 hm5C_site_57488 DeepMRMD:0.00227540000000004;iRNA_m5C:0 57489 chr19 49459546 49459546 1 + C G LUAD 49459545 + 49459525 49459565 41 GACGGCAACTTCAACTGGGGCCGGGTTGTCGCCCTTTTCTA GACGGCAACTTCAACTGGGGCGGGGTTGTCGCCCTTTTCTA < 41bp 0.54669163485831 0.821903495876033 0.3496617 0.88724184 prediction 0.550423722035446 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459545 chr19:49459546 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_104344 0 0 1 0 2 Cytosol 0.500231643921074 0.500231643921092 0.77448368 3.66373598126302e-14 hm5C_site_57489 DeepMRMD:0.77448368;iRNA_m5C:3.66373598126302e-14 57490 chr5 131630460 131630460 1 + C G HNSC 131630456 + 131630436 131630476 41 GCGGGGACCCCGGAGCACCGCTGTCGAGTGCCGGACGCCGC GCGGGGACCCCGGAGCACCGCTGTGGAGTGCCGGACGCCGC < 41bp 0.509977072355797 0.785182527805917 0.0655185 0.1251624 prediction 0.550410910900241 Functional Gain - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131630456 chr5:131630460 nonsynonymous SNV 0.193 1 25 hm5C_associated_SNPs_104345 0 0 1 0 0 Endoplasmic reticulum 0.500349634694593 0.500230617545579 0 0 hm5C_site_57490 DeepMRMD:0;iRNA_m5C:0 57491 chr12 47629393 47629393 1 + C A LUAD 47629389 + 47629369 47629409 41 GGTTTTCTTCCGCCCAAGCTCCGGCGGCAGAAGGCCACCTT GGTTTTCTTCCGCCCAAGCTCCGGAGGCAGAAGGCCACCTT < 41bp 0.634713812846286 0.909918809001054 0.8967587 0.92589784 prediction 0.550409992309536 Functional Gain - PCED1B ENSG00000179715 CDS Human protein_coding chr12:47629389 chr12:47629393 synonymous SNV . 0 25 hm5C_associated_SNPs_104346 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.0582782799999999 0 hm5C_site_57491 DeepMRMD:0.0582782799999999;iRNA_m5C:0 57492 chr1 173794434 173794434 1 + C A UCEC 173794430 + 173794410 173794450 41 TCCAGACCCATCAGAAGGACCACCCAACCGATCTGGGGTTC TCCAGACCCATCAGAAGGACCACCAAACCGATCTGGGGTTC < 41bp 0.370736496237529 0.775203140248922 0.26562914 0.39697048 prediction 0.550406280497843 Functional Gain - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173794430 chr1:173794434 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_104347 0 0 1 0 1 chromatin 0.5002316439211 0.50023164391601 0 0 hm5C_site_57492 DeepMRMD:0;iRNA_m5C:0 57493 chr22 44968220 44968220 1 + C G rs186692592 44968216 + 44968196 44968236 41 GTCGCACAGTGCAGGCAAATCACACGGACCTCAGAGCAGGG GTCGCACAGTGCAGGCAAATCACAGGGACCTCAGAGCAGGG < 41bp 0.499338169679076 0.775203035204745 0.07122165 0.3353554 prediction 0.550406070409489 Functional Gain - LINC00207 ENSG00000187012 ncRNA_exonic Human lincRNA chr22:44968216 chr22:44968220 . . 0 25 hm5C_associated_SNPs_104348 0 0 0 0 0 unknown 0.500232710590947 0.500231642409076 0 0 hm5C_site_57493 DeepMRMD:0;iRNA_m5C:0 57494 chr14 24529189 24529189 1 + C A UCEC 24529185 + 24529165 24529205 41 CCTGTGTCCCACAGCAACCACACGCTGCGCTTCATGTCCTT CCTGTGTCCCACAGCAACCACACGATGCGCTTCATGTCCTT < 41bp 0.372721180275476 0.775192987907561 0.030700833 0.12280181 prediction 0.550385975815121 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24529185 chr14:24529189 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_104349 0 0 0 0 2 Endoplasmic reticulum 0.50023093226361 0.500231641017253 0 1.4175072857725e-06 hm5C_site_57494 DeepMRMD:0;iRNA_m5C:1.4175072857725e-06 57495 chr1 70032972 70032972 1 + C A rs114441367 70032968 + 70032948 70032988 41 ACAACCTGCAGCAGGCAAGGCGGGCGGGGGAGGAAACCCCG ACAACCTGCAGCAGGCAAGGCGGGAGGGGGAGGAAACCCCG < 41bp 0.572579821847493 0.847752929986798 0.8313824 0.85534716 prediction 0.55034621627861 Functional Gain - LRRC7 ENSG00000229639;ENSG00000033122 intergenic Human other chr1:70032968 chr1:70032972 . . 0 25 hm5C_associated_SNPs_104350 0 0 0 0 0 cytosol 0.500231643921498 0.500231643921013 0.0479295200000001 0 hm5C_site_57495 DeepMRMD:0.0479295200000001;iRNA_m5C:0 57496 chr20 60868864 60868864 1 + C G UVM 60868863 + 60868843 60868883 41 GGTTCTACCCAGGCAATAACCCCTACACTGGGACCCCCGAC GGTTCTACCCAGGCAATAACCGCTACACTGGGACCCCCGAC < 41bp 0.473496956726898 0.775171138319785 0.24887484 0.28569555 prediction 0.55034227663957 Functional Gain - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60868863 chr20:60868864 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_104351 0 0 1 0 1 Ribosome 0.500231643921092 0.500231642465387 0 0 hm5C_site_57496 DeepMRMD:0;iRNA_m5C:0 57497 chr8 71595773 71595773 1 + C A rs554978828 71595769 + 71595749 71595789 41 GCCTTGCTCTGTCACCCAGGCTGGCCTGCAGTGGCGCCTTC GCCTTGCTCTGTCACCCAGGCTGGACTGCAGTGGCGCCTTC < 41bp 0.531722681130231 0.806889709526385 0.09877214 0.09249815 prediction 0.550334056792307 Functional Gain - XKR9 ENSG00000221947 CDS Human protein_coding chr8:71595769 chr8:71595773 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_104352 0 0 0 0 1 exosome 0.500231643944664 0.50023165450206 0 2.11147908046883e-08 hm5C_site_57497 DeepMRMD:0;iRNA_m5C:2.11147908046883e-08 57498 chr7 47698695 47698695 1 + C A LUAD 47698691 + 47698671 47698711 41 TTGGAAGACACTGGATCTCACTGGCTCAGCTGGGCACGGTG TTGGAAGACACTGGATCTCACTGGATCAGCTGGGCACGGTG < 41bp 0.623536614975603 0.898703170117295 0.3663798 0.4791208 prediction 0.550333110283384 Functional Gain - C7orf65 ENSG00000221845 CDS Human lincRNA chr7:47698691 chr7:47698695 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_104353 0 0 0 0 0 unknown 0.500231643921093 0.500231643921093 0 0 hm5C_site_57498 DeepMRMD:0;iRNA_m5C:0 57499 chr5 6583526 6583526 1 + C G rs555016 6583522 + 6583502 6583542 41 GCCCCTTTCTGCAGCTCCTCCACCCGCGCGCTGTCGGCTCC GCCCCTTTCTGCAGCTCCTCCACCGGCGCGCTGTCGGCTCC < 41bp 0.50609788192607 0.78126040738247 0.34317172 0.32300907 prediction 0.5503250509128 Functional Gain - LINC01018 ENSG00000250056 ncRNA_exonic Human lincRNA chr5:6583522 chr5:6583526 . . 0 25 hm5C_associated_SNPs_104354 0 0 0 0 0 unknown 0.500231643921165 0.500231644446141 0 1.04995168115352e-09 hm5C_site_57499 DeepMRMD:0;iRNA_m5C:1.04995168115352e-09 57500 chr1 202843471 202843471 1 + C A rs144343309 202843467 + 202843447 202843487 41 GCTTCTAAATGGACTGCAAGCAGACGCGTGTCATGTGCTTC GCTTCTAAATGGACTGCAAGCAGAAGCGTGTCATGTGCTTC < 41bp 0.41273368038479 0.775155825410006 0.6410612 0.74618375 prediction 0.550311650820013 Functional Gain - LOC148709 ENSG00000234996 ncRNA_exonic Human transcribed_processed_pseudogene chr1:202843467 chr1:202843471 . . 0 25 hm5C_associated_SNPs_104355 0 0 0 0 0 unknown 0.500231642232721 0.500231644115798 0.2102451 3.76615405528469e-09 hm5C_site_57500 DeepMRMD:0.2102451;iRNA_m5C:3.76615405528469e-09 57501 chr11 55860845 55860845 1 + C G LUAD 55860844 + 55860824 55860864 41 TCTCTGGATTTGCAAATCACCCTGAATTACAAGTCAGTCTT TCTCTGGATTTGCAAATCACCGTGAATTACAAGTCAGTCTT < 41bp 0.502012581413059 0.77716746265973 0.018775105 0.068782836 prediction 0.550309762493341 Functional Gain - OR8I2 ENSG00000172154 CDS Human protein_coding chr11:55860844 chr11:55860845 nonsynonymous SNV 0.985 0 22 hm5C_associated_SNPs_104356 0 0 0 0 0 unknown 0.500232959891343 0.500231518024583 0 0 hm5C_site_57501 DeepMRMD:0;iRNA_m5C:0 57502 chr19 48789060 48789060 1 + C A LUAD 48789056 + 48789036 48789076 41 AAACCAAAGACGCAACCCCTCAGCCGGATATTCTTCCTAAA AAACCAAAGACGCAACCCCTCAGCAGGATATTCTTCCTAAA < 41bp 0.37875131354197 0.775145876385215 0.17159197 0.15237719 prediction 0.550291752770429 Functional Gain - ZNF114 ENSG00000178150 CDS Human protein_coding chr19:48789056 chr19:48789060 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_104357 0 0 0 0 1 chromatin 0.500231643918535 0.500231643923524 0 9.97824045612106e-12 hm5C_site_57502 DeepMRMD:0;iRNA_m5C:9.97824045612106e-12 57503 chr14 76967838 76967838 1 + C G rs73320346 76967837 + 76967817 76967857 41 GTGGGGGGGGCCTCCTTTCCCCATAGACTCTGCCCTCCCTC GTGGGGGGGGCCTCCTTTCCCGATAGACTCTGCCCTCCCTC < 41bp 0.492570347912967 0.775142038057929 0.14827156 0.41506767 prediction 0.550284076115858 Functional Gain - ESRRB ENSG00000259124 ncRNA_intronic Human lincRNA chr14:76967837 chr14:76967838 . . 0 22 hm5C_associated_SNPs_104358 0 0 0 0 0 Nucleus 0.500231643921093 0.500231643921092 0 0 hm5C_site_57503 DeepMRMD:0;iRNA_m5C:0 57504 chr15 43890406 43890406 1 + C G LGG 43890405 + 43890385 43890425 41 ACTCAGGTGGAGAGACTTATCCAAGAACGTGGCTGGGAGTT ACTCAGGTGGAGAGACTTATCGAAGAACGTGGCTGGGAGTT < 41bp 0.492583469617726 0.775124704106774 0.77130675 0.8902993 prediction 0.550249408213548 Functional Gain - CKMT1B ENSG00000237289 CDS Human protein_coding chr15:43890405 chr15:43890406 nonsynonymous SNV 0.896 2 22 hm5C_associated_SNPs_104359 0 0 0 0 1 Cytosol 0.500231643851062 0.500231643919929 0.2379851 1.37734490479602e-10 hm5C_site_57504 DeepMRMD:0.2379851;iRNA_m5C:1.37734490479602e-10 57505 chr16 89221923 89221923 1 + C G rs187126304 89221922 + 89221902 89221942 41 TTCCAGGACTGGTGGGTGCCCCAGTCCACGGCCCTGCCCCA TTCCAGGACTGGTGGGTGCCCGAGTCCACGGCCCTGCCCCA < 41bp 0.490966160386694 0.775122872877436 0.6549784 0.78970397 prediction 0.550245745754873 Functional Gain - ACSF3 ENSG00000176715 UTR3 Human protein_coding chr16:89221922 chr16:89221923 . . 0 22 hm5C_associated_SNPs_104360 0 0 1 0 0 chromatin 0.500231643921082 0.500231643921092 0.26945114 2.04281036531029e-14 hm5C_site_57505 DeepMRMD:0.26945114;iRNA_m5C:2.04281036531029e-14 57506 chr6 33380552 33380552 1 + T A LAML 33380548 + 33380528 33380568 41 GTCCCTGGGAACCGGCTGGTCAGCTGTGAGAAGTGTCGCCA GTCCCTGGGAACCGGCTGGTCAGCAGTGAGAAGTGTCGCCA < 41bp 0.543429189516441 0.818545964959077 0.433567 0.17647779 prediction 0.550233550885273 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380548 chr6:33380552 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_104361 0 0 1 2 2 Cytosol 0.50023164761043 0.500232094851521 0 8.94482181212908e-07 hm5C_site_57506 DeepMRMD:0;iRNA_m5C:8.94482181212908e-07 57507 chr14 105964187 105964187 1 + C G rs150385054 105964183 + 105964163 105964203 41 AGGTGCCTGCTGCAGCCTCACAGCCCACCTTCCTGCCCTGG AGGTGCCTGCTGCAGCCTCACAGCGCACCTTCCTGCCCTGG < 41bp 0.489101311031148 0.775098792815012 0.38635522 0.5891466 prediction 0.550197585630024 Functional Gain - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105964183 chr14:105964187 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_104362 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.1782932 0 hm5C_site_57507 DeepMRMD:0.1782932;iRNA_m5C:0 57508 chr19 58565156 58565156 1 + T G LUSC 58565154 + 58565134 58565174 41 TCGCGAGGAAGGGCCCTTTCCGTGCCCCGAGTGTGGCAAGG TCGCGAGGAAGGGCCCTTTCCGGGCCCCGAGTGTGGCAAGG < 41bp 0.425631029895919 0.775097974013574 0.1996949 0.894318 prediction 0.550195948027147 Functional Gain - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58565154 chr19:58565156 nonsynonymous SNV 0.163 4 23 hm5C_associated_SNPs_104363 0 0 0 0 0 exosome 0.500231643921172 0.500231643921092 0.788636 0 hm5C_site_57508 DeepMRMD:0.788636;iRNA_m5C:0 57509 chr10 18429624 18429624 1 + C A rs138094231 18429620 + 18429600 18429640 41 GGGGGCGAGGAGGAGGGGACCCGCCGCCGGGGGCTGGCTGC GGGGGCGAGGAGGAGGGGACCCGCAGCCGGGGGCTGGCTGC < 41bp 0.528965176488283 0.804063055062645 0.8100378 0.8925701 prediction 0.550195757148723 Functional Gain - CACNB2 ENSG00000165995 UTR5 Human protein_coding chr10:18429620 chr10:18429624 . . 0 25 hm5C_associated_SNPs_104364 1 0 0 0 0 chromatin 0.500231643921092 0.500231643920865 0.1650646 0 hm5C_site_57509 DeepMRMD:0.1650646;iRNA_m5C:0 not specified not specified 57510 chr10 73472448 73472448 1 + A C COAD 73472451 - 73472431 73472471 41 GACGAACACGGTGGCTGTGCCCGTGTGTCGCTTCCCTACAG GACGAACACGGTGGCTGTGCCCGGGTGTCGCTTCCCTACAG < 41bp 0.426214524598564 0.775093388204102 0.16625735 0.8993889 prediction 0.550186776408205 Functional Gain - CDH23 ENSG00000107736 CDS Human protein_coding chr10:73472451 chr10:73472448 nonsynonymous SNV 0.636 2 24 hm5C_associated_SNPs_104365 0 0 0 0 0 exosome 0.50023164305083 0.500231643921143 0.7987778 1.74062431135269e-09 hm5C_site_57510 DeepMRMD:0.7987778;iRNA_m5C:1.74062431135269e-09 57511 chr7 102579923 102579923 1 + T G KIRC 102579921 + 102579901 102579941 41 TCCCTCCAGATATTGTTAAACTTGACTTGTCATACAATAAA TCCCTCCAGATATTGTTAAACTGGACTTGTCATACAATAAA < 41bp 0.468925843423132 0.775083879841444 0.006237358 0.004857987 prediction 0.550167759682887 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102579921 chr7:102579923 synonymous SNV . 0 23 hm5C_associated_SNPs_104366 0 0 0 0 0 Cytosol 0.500231639552932 0.500231637748372 0 0 hm5C_site_57511 DeepMRMD:0;iRNA_m5C:0 57512 chr16 24788434 24788434 1 + C A READ 24788430 + 24788410 24788450 41 AGCAGCCACAGCAGCAGCCACAGCCGCAGCCGCAGCAGCAG AGCAGCCACAGCAGCAGCCACAGCAGCAGCCGCAGCAGCAG < 41bp 0.379127787969872 0.775083476379862 0.17700136 0.32067722 prediction 0.550166952759725 Functional Gain - TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24788430 chr16:24788434 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104367 0 0 0 0 0 Nucleus 0.500231644287937 0.500231643982356 0 0 hm5C_site_57512 DeepMRMD:0;iRNA_m5C:0 57513 chrX 55650944 55650944 1 + C A UCEC 55650940 + 55650920 55650960 41 ATGAAGATAATGCAAGACCTCGCTCTTGCCTTTGGAAGCTC ATGAAGATAATGCAAGACCTCGCTATTGCCTTTGGAAGCTC < 41bp 0.373902858365823 0.775079830680894 0.06361848 0.046971083 prediction 0.550159661361788 Functional Gain - FOXR2 ENSG00000189299 CDS Human protein_coding chrX:55650940 chrX:55650944 nonsynonymous SNV 0.010 4 25 hm5C_associated_SNPs_104368 0 0 0 0 0 unknown 0.500231642002212 0.500231644973719 0 5.94301363676664e-09 hm5C_site_57513 DeepMRMD:0;iRNA_m5C:5.94301363676664e-09 57514 chr15 76019523 76019523 1 + C G LUAD 76019522 + 76019502 76019542 41 ACAGAGTGATGGACCTCAACCCGGCTCCCAACCAGTACCAG ACAGAGTGATGGACCTCAACCGGGCTCCCAACCAGTACCAG < 41bp 0.560151867039008 0.835219415547194 0.4451048 0.8928187 prediction 0.550135097016371 Functional Gain - ODF3L1 ENSG00000182950 CDS Human protein_coding chr15:76019522 chr15:76019523 nonsynonymous SNV 0.121 4 22 hm5C_associated_SNPs_104369 0 0 0 0 0 exosome 0.500231643921112 0.500231643920634 0.7856374 0 hm5C_site_57514 DeepMRMD:0.7856374;iRNA_m5C:0 57515 chr12 55615466 55615466 1 + C A HNSC 55615462 + 55615442 55615482 41 TGTCTCATTTTGGTTTCCTACACCCGCATTATCATAACAAT TGTCTCATTTTGGTTTCCTACACCAGCATTATCATAACAAT < 41bp 0.385783148696658 0.77505746310273 0.017889112 0.029963523 prediction 0.550114926205461 Functional Gain - OR10A7 ENSG00000179919 CDS Human protein_coding chr12:55615462 chr12:55615466 nonsynonymous SNV 0.026 1 25 hm5C_associated_SNPs_104370 0 0 0 0 0 unknown 0.500231643921092 0.500231644096091 0 3.49997586468476e-10 hm5C_site_57515 DeepMRMD:0;iRNA_m5C:3.49997586468476e-10 57516 chr13 113817408 113817408 1 + C G rs186968607 113817407 + 113817387 113817427 41 CTACACCTGCACCTGCTCCCCCGGCTATGAGGGCAGCAACT CTACACCTGCACCTGCTCCCCGGGCTATGAGGGCAGCAACT < 41bp 0.470067966064834 0.775056999822094 0.18800777 0.88077116 prediction 0.550113999644188 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113817407 chr13:113817408 synonymous SNV . 0 22 hm5C_associated_SNPs_104371 0 0 0 0 2 exosome 0.500231643921079 0.50023164392132 0.76154232 4.82280881897168e-13 hm5C_site_57516 DeepMRMD:0.76154232;iRNA_m5C:4.82280881897168e-13 57517 chr10 20290841 20290841 1 + C A BLCA 20290837 + 20290817 20290857 41 GACACGAACCGAGCAAGCGTCGGCCAAGACTCTCCTGAGCC GACACGAACCGAGCAAGCGTCGGCAAAGACTCTCCTGAGCC < 41bp 0.37995729662599 0.775052144732998 0.54418963 0.48982194 prediction 0.550104289465996 Functional Gain - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20290837 chr10:20290841 nonsynonymous SNV 0.069 1 25 hm5C_associated_SNPs_104372 0 0 1 0 1 Nucleus 0.500231644034879 0.50023164395995 0 0 hm5C_site_57517 DeepMRMD:0;iRNA_m5C:0 57518 chr12 124172643 124172643 1 + C A rs144567556 124172639 + 124172619 124172659 41 CTTTGAAGTATATGTGGATACTGACGCAAAAGACTTTGCAG CTTTGAAGTATATGTGGATACTGAAGCAAAAGACTTTGCAG < 41bp 0.377060713841659 0.775030599167637 0.1554904 0.3590859 prediction 0.550061198335273 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124172639 chr12:124172643 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_104373 1 0 0 0 2 Nucleus 0.500169944788937 0.500231130055875 0 0.000122370533876426 hm5C_site_57518 DeepMRMD:0;iRNA_m5C:0.000122370533876426 not provided not provided 57519 chr4 159092037 159092037 1 + G C SKCM 159092038 - 159092018 159092058 41 GGGAAGCTGATGCTGTAGCACCTGGGTACGCTCAGGGAGCA GGGAAGCTGATGCTGTAGCACGTGGGTACGCTCAGGGAGCA < 41bp 0.466744817690663 0.775023076360073 0.26932532 0.68747807 prediction 0.550046152720146 Functional Gain - FAM198B ENSG00000164125 CDS Human protein_coding chr4:159092038 chr4:159092037 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_104374 0 0 1 0 0 Cytosol 0.500231643921099 0.500231643921093 0.37495614 0 hm5C_site_57519 DeepMRMD:0.37495614;iRNA_m5C:0 57520 chr22 39428331 39428331 1 + C A rs185523047 39428327 + 39428307 39428347 41 GAGATTCTCCAGTGAGGGGTCTCCCTGGGCCTCATGGTCTG GAGATTCTCCAGTGAGGGGTCTCCATGGGCCTCATGGTCTG < 41bp 0.376433905090551 0.775017592086816 0.2525587 0.9604989 prediction 0.550035184173632 Functional Gain - APOBEC3D ENSG00000243811 UTR3 Human protein_coding chr22:39428327 chr22:39428331 . . 0 25 hm5C_associated_SNPs_104375 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643920239 0.9209978 0 hm5C_site_57520 DeepMRMD:0.9209978;iRNA_m5C:0 57521 chr19 34297866 34297866 1 + T C STAD 34297864 + 34297844 34297884 41 GGGGAGATTTTCCGCTACGTCCTGAGCTTCCTGCGGACGTC GGGGAGATTTTCCGCTACGTCCCGAGCTTCCTGCGGACGTC < 41bp 0.514167175461494 0.789179813006423 0.13651195 0.17822826 prediction 0.550025275089859 Functional Gain - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34297864 chr19:34297866 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_104376 0 0 1 0 2 Cytosol 0.500231643989846 0.500231644055511 0 1.31329613850539e-10 hm5C_site_57521 DeepMRMD:0;iRNA_m5C:1.31329613850539e-10 57522 chr5 140710430 140710430 1 + C A LUAD 140710426 + 140710406 140710446 41 TAGGGCTGCAACCCCAGGAGCTGGCAGATGGCGGAGTCCGC TAGGGCTGCAACCCCAGGAGCTGGAAGATGGCGGAGTCCGC < 41bp 0.386478020811298 0.775005938183789 0.3703491 0.38797095 prediction 0.550011876367578 Functional Gain - PCDHGA1 ENSG00000204956 CDS Human protein_coding chr5:140710426 chr5:140710430 nonsynonymous SNV 0.058 0 25 hm5C_associated_SNPs_104377 0 0 0 0 0 exosome 0.500231643823098 0.500231643921093 0 1.95989668938523e-10 hm5C_site_57522 DeepMRMD:0;iRNA_m5C:1.95989668938523e-10 57523 chr10 50820230 50820230 1 + C A LUSC 50820226 + 50820206 50820246 41 CTCCTGACGCGCTCCCGTTCCGAGCGCGATGTGCTGCTTGA CTCCTGACGCGCTCCCGTTCCGAGAGCGATGTGCTGCTTGA < 41bp 0.615691782624794 0.890689184012635 0.44161236 0.69709253 prediction 0.549994802775682 Functional Gain - SLC18A3 ENSG00000187714 CDS Human protein_coding chr10:50820226 chr10:50820230 nonsynonymous SNV 0.993 0 25 hm5C_associated_SNPs_104378 0 0 0 0 0 exosome 0.500230148421311 0.500231650399752 0.39418506 3.00395688102029e-06 hm5C_site_57523 DeepMRMD:0.39418506;iRNA_m5C:3.00395688102029e-06 Blood protein levels 57524 chr20 4706714 4706714 1 + C G rs139058184 4706713 + 4706693 4706733 41 ACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCT ACAGGGTTTCACCATGTTGGCGAGGCTGGTCTTGAACTCCT < 41bp 0.505766430670032 0.780757373581225 0.28793845 0.862412 prediction 0.549981885822387 Functional Gain - PRND ENSG00000171864 UTR3 Human protein_coding chr20:4706713 chr20:4706714 . . 0 22 hm5C_associated_SNPs_104379 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.724824 2.22044604925031e-16 hm5C_site_57524 DeepMRMD:0.724824;iRNA_m5C:2.22044604925031e-16 57525 chr2 228337216 228337216 1 + C G HNSC 228337215 + 228337195 228337235 41 ATGACCGGCCTCCCGCACAACCGAAAGTGCTTCGACTGCGA ATGACCGGCCTCCCGCACAACGGAAAGTGCTTCGACTGCGA < 41bp 0.51552723382642 0.790515505997149 0.6854907 0.83814776 prediction 0.549976544341457 Functional Gain - AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228337215 chr2:228337216 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_104380 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643914922 0.30531412 0 hm5C_site_57525 DeepMRMD:0.30531412;iRNA_m5C:0 57526 chr11 101000370 101000370 1 + C G rs2008112 101000369 + 101000349 101000389 41 GGGTCGGACTTCTGCTGGCTCCGTACTGCGGGCGACAGTCA GGGTCGGACTTCTGCTGGCTCGGTACTGCGGGCGACAGTCA < 41bp 0.48722700253557 0.774987642133298 0.04056686 0.1724456 prediction 0.549975284266595 Functional Gain - PGR-AS1 ENSG00000082175 UTR5 Human protein_coding chr11:101000369 chr11:101000370 . . 0 22 hm5C_associated_SNPs_104381 0 0 0 0 0 unknown 0.500231643921088 0.500231643921093 0 8.43769498715119e-15 hm5C_site_57526 DeepMRMD:0;iRNA_m5C:8.43769498715119e-15 57527 chr19 39866417 39866417 1 + C G LUSC 39866413 + 39866393 39866433 41 GGCCCGGGCTGCTTTTACCACGCCCGATCACGCACCTCTCT GGCCCGGGCTGCTTTTACCACGCCGGATCACGCACCTCTCT < 41bp 0.519897718966061 0.794876011308874 0.35970995 0.77030826 prediction 0.549956584685626 Functional Gain - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39866413 chr19:39866417 synonymous SNV . 0 25 hm5C_associated_SNPs_104382 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643915541 0.54061652 0 hm5C_site_57527 DeepMRMD:0.54061652;iRNA_m5C:0 57528 chr2 133175422 133175422 1 + C G SKCM 133175421 + 133175401 133175441 41 GCCTCCGCAGCTGAGGAAGTCCGAGAGCGAAGAGAGCAGGA GCCTCCGCAGCTGAGGAAGTCGGAGAGCGAAGAGAGCAGGA < 41bp 0.54078410019123 0.815758483752316 0.4329262 0.9208879 prediction 0.549948767122173 Functional Gain - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133175421 chr2:133175422 synonymous SNV . 0 22 hm5C_associated_SNPs_104383 0 0 0 0 1 nucleus 0.500231643943326 0.500231643920032 0.8417758 0 hm5C_site_57528 DeepMRMD:0.8417758;iRNA_m5C:0 57529 chr19 39908646 39908646 1 + C G GBM 39908645 + 39908625 39908665 41 AGGAGGCGGAGGGGGTGGCCCCCGGCTACGAGGGGGTGAGC AGGAGGCGGAGGGGGTGGCCCGCGGCTACGAGGGGGTGAGC < 41bp 0.564244240560624 0.839205123729992 0.8583324 0.9078982 prediction 0.549921766338737 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39908645 chr19:39908646 synonymous SNV . 0 22 hm5C_associated_SNPs_104384 0 0 1 0 1 Nucleus 0.500231681176674 0.500231600630564 0.0991316 0 hm5C_site_57529 DeepMRMD:0.0991316;iRNA_m5C:0 57530 chr11 47587243 47587243 1 + C G rs143766862 47587242 + 47587222 47587262 41 CTACCCGACGCTGCTCTACACCCTGTTCCGCGGGAAGGTGC CTACCCGACGCTGCTCTACACGCTGTTCCGCGGGAAGGTGC < 41bp 0.527808252623476 0.802763400563932 0.0077039897 0.108878314 prediction 0.54991029588091 Functional Gain - PTPMT1 ENSG00000110536 CDS Human protein_coding chr11:47587242 chr11:47587243 synonymous SNV . 0 22 hm5C_associated_SNPs_104385 0 0 1 0 0 Ribosome 0.50023164392162 0.500231644771139 0 1.69903779934089e-09 hm5C_site_57530 DeepMRMD:0;iRNA_m5C:1.69903779934089e-09 57531 chr17 78013907 78013907 1 + T G HNSC 78013904 + 78013884 78013924 41 CTGCCTGGAGAGGAGGCATACGATAGTGTTAGCGGGGAGGC CTGCCTGGAGAGGAGGCATACGAGAGTGTTAGCGGGGAGGC < 41bp 0.624696388816871 0.899640872875155 0.27181256 0.789042 prediction 0.549888968116568 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78013904 chr17:78013907 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_104386 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.578084 0 hm5C_site_57531 DeepMRMD:0.578084;iRNA_m5C:0 57532 chr1 55518431 55518431 1 + C G HNSC 55518427 + 55518407 55518447 41 CGCAGCCTGCGCGTGCTCAACTGCCAAGGGAAGGGCACGGT CGCAGCCTGCGCGTGCTCAACTGCGAAGGGAAGGGCACGGT < 41bp 0.516215314055759 0.791156566120698 0.22953334 0.3804626 prediction 0.549882504129878 Functional Gain - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55518427 chr1:55518431 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_104387 0 0 1 0 0 Nucleus 0.50023164391573 0.500231372699872 0 0 hm5C_site_57532 DeepMRMD:0;iRNA_m5C:0 57533 chr14 21167642 21167642 1 + C G rs143247343 21167638 + 21167618 21167658 41 GATGGCATGTACCAGCGATTCCTGCGGCAACACGTGCACCC GATGGCATGTACCAGCGATTCCTGGGGCAACACGTGCACCC < 41bp 0.491835691516563 0.774941054192462 0.3416435 0.78029823 prediction 0.549882108384924 Functional Gain - RNASE4 ENSG00000258818 CDS Human protein_coding chr14:21167638 chr14:21167642 nonsynonymous SNV 0.789 2 25 hm5C_associated_SNPs_104388 0 0 1 0 0 cytosol 0.50023954842126 0.500231643921092 0.56059646 0 hm5C_site_57533 DeepMRMD:0.56059646;iRNA_m5C:0 57534 chr6 26413368 26413368 1 + T G rs6901245 26413366 + 26413346 26413386 41 AATCCAGGAAAAATGGTTGACCTCATGGACACTTCCTCAAA AATCCAGGAAAAATGGTTGACCGCATGGACACTTCCTCAAA < 41bp 0.482622828173642 0.774928278857098 0.023686975 0.02583155 prediction 0.549856557714197 Functional Gain - BTN3A1 ENSG00000026950 UTR3 Human protein_coding chr6:26413366 chr6:26413368 . . 0 23 hm5C_associated_SNPs_104389 0 0 0 0 0 Nucleus 0.5002316439211 0.500231643921162 0 1.23678844943242e-13 hm5C_site_57534 DeepMRMD:0;iRNA_m5C:1.23678844943242e-13 57535 chr1 43803901 43803901 1 + C A HNSC 43803897 + 43803877 43803917 41 TACCAGCTGCTGTATGCCTACCCGCGGTAGGTGCTGGACTG TACCAGCTGCTGTATGCCTACCCGAGGTAGGTGCTGGACTG < 41bp 0.373204283809059 0.774925240929291 0.14571029 0.20549333 prediction 0.549850481858582 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43803897 chr1:43803901 synonymous SNV . 0 25 hm5C_associated_SNPs_104390 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_57535 DeepMRMD:0;iRNA_m5C:0 57536 chr2 162279937 162279937 1 + C A LIHC 162279933 + 162279913 162279953 41 CCCCTCGCCCAACGACTCGCCGCGCTCGCAGATCGTGCCCG CCCCTCGCCCAACGACTCGCCGCGATCGCAGATCGTGCCCG < 41bp 0.63668193020287 0.911578936039877 0.054678977 0.09982711 prediction 0.549794011674014 Functional Gain - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162279933 chr2:162279937 synonymous SNV . 0 25 hm5C_associated_SNPs_104391 0 0 1 0 1 exosome 0.500231380689419 0.500191759246869 0 0 hm5C_site_57536 DeepMRMD:0;iRNA_m5C:0 57537 chr15 75042230 75042230 1 + C G BRCA 75042226 + 75042206 75042246 41 CCAGAGCCATGGGGCTGGCCCTTGCTCGGGCATGTGCTGAC CCAGAGCCATGGGGCTGGCCCTTGGTCGGGCATGTGCTGAC < 41bp 0.490480112315953 0.774891596048232 0.016675502 0.17726856 prediction 0.549783192096464 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75042226 chr15:75042230 nonsynonymous SNV 0.035 0 25 hm5C_associated_SNPs_104392 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643925362 0 8.5398355054167e-12 hm5C_site_57537 DeepMRMD:0;iRNA_m5C:8.5398355054167e-12 57538 chr1 169765069 169765069 1 + T G rs578208754 169765067 + 169765047 169765087 41 TCGTCCGGGTGCAGCACATTCTTGATTGGTCTCATGCCTTT TCGTCCGGGTGCAGCACATTCTGGATTGGTCTCATGCCTTT < 41bp 0.543015114090797 0.817897191998924 0.23967564 0.46937904 prediction 0.549764155816255 Functional Gain - C1orf112 ENSG00000000460 UTR5 Human protein_coding chr1:169765067 chr1:169765069 . . 0 23 hm5C_associated_SNPs_104393 0 0 1 0 1 Nucleus 0.500231643903779 0.500231508481203 0 0 hm5C_site_57538 DeepMRMD:0;iRNA_m5C:0 57539 chr17 21030299 21030299 1 + T A rs78159258 21030295 + 21030275 21030315 41 TTGATTGACTATGGTCTCTCCGGCTACCAGGTAGGGGCTGG TTGATTGACTATGGTCTCTCCGGCAACCAGGTAGGGGCTGG < 41bp 0.544690340829728 0.819557862780775 0.66983885 0.49413514 prediction 0.549735043902092 Functional Gain - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21030295 chr17:21030299 synonymous SNV . 0 25 hm5C_associated_SNPs_104394 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_57539 DeepMRMD:0;iRNA_m5C:0 57540 chr4 52780188 52780188 1 + T G rs17082071 52780186 + 52780166 52780206 41 AAACAAGAGAAAACTGTTACCATGAACAAACATTGCCAGAA AAACAAGAGAAAACTGTTACCAGGAACAAACATTGCCAGAA < 41bp 0.542747320188811 0.817602442750953 0.18950462 0.89620423 prediction 0.549710245124283 Functional Gain - DCUN1D4 ENSG00000109184 UTR3 Human protein_coding chr4:52780186 chr4:52780188 . . 0 23 hm5C_associated_SNPs_104395 0 0 1 0 0 Ribosome 0.500231647809836 0.50023164876393 0.79240846 1.90818671974569e-09 hm5C_site_57540 DeepMRMD:0.79240846;iRNA_m5C:1.90818671974569e-09 57541 chr9 103348604 103348604 1 + C G rs546031058 103348603 + 103348583 103348623 41 TGAACCAGAACACGAGGCAGCCAGGCCGGTGTATCCTCCCC TGAACCAGAACACGAGGCAGCGAGGCCGGTGTATCCTCCCC < 41bp 0.54726878632 0.822115136797186 0.37313062 0.66777927 prediction 0.549692700954373 Functional Gain - CAVIN4 ENSG00000170681 CDS Human protein_coding chr9:103348603 chr9:103348604 synonymous SNV . 0 22 hm5C_associated_SNPs_104396 0 0 1 0 0 unknown 0.500231643921089 0.500231643842247 0.33555854 0 hm5C_site_57541 DeepMRMD:0.33555854;iRNA_m5C:0 57542 chr9 136287582 136287582 1 + C G rs34024143 136287581 + 136287561 136287601 41 AGGATGCACCAGCGTCACCCCCGGGCAAGATGCCCTCCCCT AGGATGCACCAGCGTCACCCCGGGGCAAGATGCCCTCCCCT < 41bp 0.495715493998505 0.774845913434511 0.8136134 0.9293328 prediction 0.549691826869023 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136287581 chr9:136287582 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_104397 0 0 0 0 1 nucleus 0.500231643921195 0.500231643921092 0.2314388 0 hm5C_site_57542 DeepMRMD:0.2314388;iRNA_m5C:0 57543 chr15 45410043 45410043 1 + T G SKCM 45410041 + 45410021 45410061 41 AGAGGGGGCTCACCTCTTATCCTCGGCGACCCACTGCACAA AGAGGGGGCTCACCTCTTATCCGCGGCGACCCACTGCACAA < 41bp 0.443143618660071 0.77482757860912 0.59434116 0.9012344 prediction 0.549655157218239 Functional Gain - DUOXA2 ENSG00000140274 CDS Human protein_coding chr15:45410041 chr15:45410043 nonsynonymous SNV 0.002 1 23 hm5C_associated_SNPs_104398 0 0 0 0 0 unknown 0.500231642945249 0.500231643921092 0.61378648 1.95168770034115e-09 hm5C_site_57543 DeepMRMD:0.61378648;iRNA_m5C:1.95168770034115e-09 57544 chr5 1801556 1801556 1 + C A rs376509886 1801552 + 1801532 1801572 41 ATGGCGGCGGCGATGACCTTCTGCCGGCTGCTGAACCGGTG ATGGCGGCGGCGATGACCTTCTGCAGGCTGCTGAACCGGTG < 41bp 0.616469442324879 0.891296015791097 0.25062904 0.31972367 prediction 0.549653146932435 Functional Gain - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1801552 chr5:1801556 synonymous SNV . 0 25 hm5C_associated_SNPs_104399 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921115 0 4.48530101948563e-14 hm5C_site_57544 DeepMRMD:0;iRNA_m5C:4.48530101948563e-14 57545 chr4 128688282 128688282 1 + T A LUSC 128688278 + 128688258 128688298 41 TATTATGAAAATAGCAAAATCAGATGGAATTGCTGGTTTAT TATTATGAAAATAGCAAAATCAGAAGGAATTGCTGGTTTAT < 41bp 0.471288313004494 0.774812422151803 0.81973195 0.8383206 prediction 0.549624844303607 Functional Gain - SLC25A31 ENSG00000151475 CDS Human protein_coding chr4:128688278 chr4:128688282 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_104400 0 0 0 0 2 unknown 0.500231644012357 0.500231646248774 0.0371773 4.47283388105291e-09 hm5C_site_57545 DeepMRMD:0.0371773;iRNA_m5C:4.47283388105291e-09 57546 chr12 14976352 14976352 1 + C G BLCA 14976351 + 14976331 14976371 41 TGACTTCTATACAGAAGACACCAAAGAGCAATCAGATGTCA TGACTTCTATACAGAAGACACGAAAGAGCAATCAGATGTCA < 41bp 0.528111556445402 0.802919933004836 0.0514777 0.13951701 prediction 0.549616753118869 Functional Gain - C12orf60 ENSG00000182993 CDS Human protein_coding chr12:14976351 chr12:14976352 synonymous SNV . 0 22 hm5C_associated_SNPs_104401 0 0 0 0 0 exosome 0.500231593703613 0.500231643511945 0 9.96166644728902e-08 hm5C_site_57546 DeepMRMD:0;iRNA_m5C:9.96166644728902e-08 57547 chr7 64863433 64863433 1 + T G UCEC 64863430 + 64863410 64863450 41 GAGGTTATAATGGACTTAACCAGTGTTTGACAACTACTGAC GAGGTTATAATGGACTTAACCAGGGTTTGACAACTACTGAC < 41bp 0.604350764698607 0.879157031153921 0.13327196 0.9109565 prediction 0.549612532910628 Functional Gain - ZNF92 ENSG00000146757 CDS Human protein_coding chr7:64863430 chr7:64863433 nonsynonymous SNV 0.034 1 24 hm5C_associated_SNPs_104402 0 0 1 0 0 Cytosol 0.500231643926716 0.500230116989532 0.821913 0 hm5C_site_57547 DeepMRMD:0.821913;iRNA_m5C:0 57548 chr6 26217433 26217433 1 + C G rs529624501 26217432 + 26217412 26217452 41 GGCTCGCGACAATAAGAAGACCCGCATCATCCCGCGCCACC GGCTCGCGACAATAAGAAGACGCGCATCATCCCGCGCCACC < 41bp 0.477006752645869 0.774801474988418 0.18846947 0.25955373 prediction 0.549602949976837 Functional Gain - HIST1H2AE ENSG00000168274 CDS Human other chr6:26217432 chr6:26217433 synonymous SNV . 0 22 hm5C_associated_SNPs_104403 0 0 1 0 0 Nucleus 0.500231643928596 0.500231706607298 0 1.2535740445685e-07 hm5C_site_57548 DeepMRMD:0;iRNA_m5C:1.2535740445685e-07 57549 chr12 6554304 6554304 1 + C G BLCA 6554303 + 6554283 6554323 41 TGGCTGTGCGTTCTGGGGACCCTGGTGGGGCTCTCAGCTAC TGGCTGTGCGTTCTGGGGACCGTGGTGGGGCTCTCAGCTAC < 41bp 0.556530049201846 0.831329671528833 0.36814487 0.8434682 prediction 0.549599244653973 Functional Gain - CD27 ENSG00000139193 CDS Human protein_coding chr12:6554303 chr12:6554304 nonsynonymous SNV 0.991 2 22 hm5C_associated_SNPs_104404 0 0 0 0 1 exosome 0.500231649753161 0.50023164392114 0.6869364 0 hm5C_site_57549 DeepMRMD:0.6869364;iRNA_m5C:0 57550 chr16 69974448 69974448 1 + C A rs3748388 69974444 + 69974424 69974464 41 CCGGCCAGTTAATTCATTCTCAGCCAATGAAGGTTTGTCTA CCGGCCAGTTAATTCATTCTCAGCAAATGAAGGTTTGTCTA < 41bp 0.387968525132689 0.774790275707716 0.35097677 0.43085122 prediction 0.549580551415432 Functional Gain - WWP2 ENSG00000198373 UTR3 Human protein_coding chr16:69974444 chr16:69974448 . . 0 25 hm5C_associated_SNPs_104405 0 0 1 1 0 Ribosome 0.500231643918652 0.500231637360775 0 0 hm5C_site_57550 DeepMRMD:0;iRNA_m5C:0 57551 chr2 28627176 28627176 1 + T G SKCM 28627174 + 28627154 28627194 41 ATGGCCCTCCCAAGACCTGGCGTGATCAAGACCATTGGCAC ATGGCCCTCCCAAGACCTGGCGGGATCAAGACCATTGGCAC < 41bp 0.59944464602172 0.874232952851917 0.33624768 0.87971985 prediction 0.549576613660393 Functional Gain - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28627174 chr2:28627176 nonsynonymous SNV 0.915 3 23 hm5C_associated_SNPs_104406 0 0 1 0 1 Cytosol 0.500231650816724 0.500231643927172 0.7594397 0 hm5C_site_57551 DeepMRMD:0.7594397;iRNA_m5C:0 57552 chr11 113857403 113857403 1 + T G LGG 113857401 + 113857381 113857421 41 GGCTACTCGGTCTTCCTGATCATCGTTTCTGACACGCTGCC GGCTACTCGGTCTTCCTGATCAGCGTTTCTGACACGCTGCC < 41bp 0.423096541208317 0.774787414780646 0.2027393 0.90532756 prediction 0.549574829561293 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113857401 chr11:113857403 nonsynonymous SNV 0.977 3 23 hm5C_associated_SNPs_104407 0 0 0 1 1 Cytosol 0.500231610266311 0.500231638448089 0.81065512 5.63635567107923e-08 hm5C_site_57552 DeepMRMD:0.81065512;iRNA_m5C:5.63635567107923e-08 57553 chr1 192545020 192545020 1 + T G STAD 192545017 + 192544997 192545037 41 ATTGAAAGGAACCACTCATTCACTTCTAGACGACAAAATGC ATTGAAAGGAACCACTCATTCACGTCTAGACGACAAAATGC < 41bp 0.422950053466813 0.774776759489187 0.09557581 0.23373193 prediction 0.549553518978373 Functional Gain - RGS1 ENSG00000090104 CDS Human protein_coding chr1:192545017 chr1:192545020 nonsynonymous SNV 0.916 1 24 hm5C_associated_SNPs_104408 0 0 0 0 1 exosome 0.500231538673675 0.50023119289809 0 0 hm5C_site_57553 DeepMRMD:0;iRNA_m5C:0 57554 chr3 142841004 142841004 1 + C G LUSC 142841003 + 142840983 142841023 41 TTGTGGGACTGTTGGTGAGCCCCGAAATGGAGCAGTTTGCC TTGTGGGACTGTTGGTGAGCCGCGAAATGGAGCAGTTTGCC < 41bp 0.550253765281293 0.825026363562761 0.06423378 0.6668003 prediction 0.549545196562938 Functional Gain - CHST2 ENSG00000175040 CDS Human protein_coding chr3:142841003 chr3:142841004 nonsynonymous SNV 0.983 3 22 hm5C_associated_SNPs_104409 0 0 1 0 0 cytosol 0.500231637643402 0.500231644314016 0.3336006 1.33412276781542e-08 hm5C_site_57554 DeepMRMD:0.3336006;iRNA_m5C:1.33412276781542e-08 57555 chr10 102588225 102588225 1 + C A rs76281219 102588221 + 102588201 102588241 41 CTCAGCGTCTCTTCCACCTGCTGGCCTCCCAGTTTCCCCTC CTCAGCGTCTCTTCCACCTGCTGGACTCCCAGTTTCCCCTC < 41bp 0.411387671164612 0.774771320076171 0.09673384 0.48327643 prediction 0.549542640152341 Functional Gain - PAX2 ENSG00000075891 UTR3 Human protein_coding chr10:102588221 chr10:102588225 . . 0 25 hm5C_associated_SNPs_104410 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921029 0 0 hm5C_site_57555 DeepMRMD:0;iRNA_m5C:0 57556 chr1 150305652 150305652 1 + C A STAD 150305648 + 150305628 150305668 41 TGGTGGGCCTGGCTAATCTCCATGCCATGGGCATTGCTCCC TGGTGGGCCTGGCTAATCTCCATGACATGGGCATTGCTCCC < 41bp 0.367628641001448 0.774770102327979 0.60250056 0.23764852 prediction 0.549540204655957 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150305648 chr1:150305652 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_104411 0 0 0 2 1 Nucleus 0.500231643921102 0.500231643921092 0 0 hm5C_site_57556 DeepMRMD:0;iRNA_m5C:0 57557 chr20 34205139 34205139 1 + C G OV 34205138 + 34205118 34205158 41 TGAGGCAGGAGATGCCTCCCCCGCGGGTGTTCAAGAGCTTT TGAGGCAGGAGATGCCTCCCCGGCGGGTGTTCAAGAGCTTT < 41bp 0.552238243916031 0.827006009161956 0.54923755 0.84635454 prediction 0.549535530491851 Functional Gain - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34205138 chr20:34205139 nonsynonymous SNV 0.679 0 22 hm5C_associated_SNPs_104412 0 0 0 0 2 chromatin 0.500231643921102 0.500231643921092 0.59423398 0 hm5C_site_57557 DeepMRMD:0.59423398;iRNA_m5C:0 57558 chr12 5154427 5154427 1 + C A UCEC 5154423 + 5154403 5154443 41 GCCATCTTCCCCTACTTCATCACCCTGGGCACCGAACTGGC GCCATCTTCCCCTACTTCATCACCATGGGCACCGAACTGGC < 41bp 0.350356568722624 0.774767448437548 0.065250635 0.07861221 prediction 0.549534896875097 Functional Gain - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5154423 chr12:5154427 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_104413 0 0 0 0 0 exosome 0.500237561911837 0.500230904250819 0 0 hm5C_site_57558 DeepMRMD:0;iRNA_m5C:0 57559 chr17 39388789 39388789 1 + C A UCEC 39388785 + 39388765 39388805 41 TTGCTCCCCTTGCTGTCAGCCTACCTGCTGCAGGACCACCT TTGCTCCCCTTGCTGTCAGCCTACATGCTGCAGGACCACCT < 41bp 0.382000185552897 0.77476056892195 0.122529805 0.45153916 prediction 0.5495211378439 Functional Gain - KRTAP9-3;KRTAP9-9 ENSG00000204873 CDS Human protein_coding chr17:39388785 chr17:39388789 synonymous SNV . 0 25 hm5C_associated_SNPs_104414 0 0 0 0 0 unknown 0.500231643920519 0.500231643313003 0 0 hm5C_site_57559 DeepMRMD:0;iRNA_m5C:0 57560 chr2 242814968 242814968 1 + C A UCEC 242814964 + 242814944 242814984 41 CTCCCCTCCCAGGTCAAGGGCTCCCTTGCCCTCCCCTTCCC CTCCCCTCCCAGGTCAAGGGCTCCATTGCCCTCCCCTTCCC < 41bp 0.36414309201997 0.774751922036324 0.10133201 0.89876914 prediction 0.549503844072649 Functional Gain - RTP5 ENSG00000188011 CDS Human protein_coding chr2:242814964 chr2:242814968 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_104415 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0.79753828 2.22044604925031e-16 hm5C_site_57560 DeepMRMD:0.79753828;iRNA_m5C:2.22044604925031e-16 57561 chr16 20448669 20448669 1 + C A LUAD 20448665 + 20448645 20448685 41 CTGGAGTCGGCTGTGGTCAGCAGCCCAGACCCCATCAGGGG CTGGAGTCGGCTGTGGTCAGCAGCACAGACCCCATCAGGGG < 41bp 0.370445530211831 0.774751682669433 0.3467561 0.26999772 prediction 0.549503365338866 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20448665 chr16:20448669 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_104416 0 0 0 0 2 cytosol 0.500231643921092 0.500231643923148 0 4.11137790479188e-12 hm5C_site_57561 DeepMRMD:0;iRNA_m5C:4.11137790479188e-12 57562 chr8 30032679 30032679 1 + T A SKCM 30032675 + 30032655 30032695 41 TAGTGATTGGCGAAGGGAACCTAATAGAAGAACAGGCCCTT TAGTGATTGGCGAAGGGAACCTAAAAGAAGAACAGGCCCTT < 41bp 0.462796446712968 0.774736797823518 0.1980288 0.39288312 prediction 0.549473595647036 Functional Gain - DCTN6 ENSG00000104671 CDS Human protein_coding chr8:30032675 chr8:30032679 nonsynonymous SNV 0.989 3 25 hm5C_associated_SNPs_104417 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643915059 0 0 hm5C_site_57562 DeepMRMD:0;iRNA_m5C:0 57563 chr3 49569285 49569285 1 + C A COAD 49569281 + 49569261 49569301 41 TGACTCCACCACCACCACGACTCGCAGGCCAACCAAGAAAC TGACTCCACCACCACCACGACTCGAAGGCCAACCAAGAAAC < 41bp 0.359601978120434 0.774734983465989 0.11194238 0.3902201 prediction 0.549469966931979 Functional Gain - DAG1 ENSG00000173402 CDS Human protein_coding chr3:49569281 chr3:49569285 synonymous SNV . 0 25 hm5C_associated_SNPs_104418 0 0 1 0 0 Nucleus 0.500231643859472 0.500231676128789 0 6.45386342146281e-08 hm5C_site_57563 DeepMRMD:0;iRNA_m5C:6.45386342146281e-08 57564 chrX 89177650 89177650 1 + C G LUAD 89177649 + 89177629 89177669 41 AGCTCACCGGAATAGCCCAGCCGAAGAAAAAGGTCAAGGTT AGCTCACCGGAATAGCCCAGCGGAAGAAAAAGGTCAAGGTT < 41bp 0.553096400667923 0.827826059618243 0.3231998 0.38639504 prediction 0.549459317900639 Functional Gain - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177649 chrX:89177650 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_104419 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57564 DeepMRMD:0;iRNA_m5C:0 57565 chr1 223567176 223567176 1 + C A UCEC 223567172 + 223567152 223567192 41 AGACAGGAACCAAGCCCCGCCCGGCTTGGCAGCCGCAGACC AGACAGGAACCAAGCCCCGCCCGGATTGGCAGCCGCAGACC < 41bp 0.602508983770638 0.877216177951313 0.2768913 0.4019504 prediction 0.549414388361351 Functional Gain - CCDC185 ENSG00000178395 CDS Human protein_coding chr1:223567172 chr1:223567176 nonsynonymous SNV 0.017 1 25 hm5C_associated_SNPs_104420 0 0 0 0 0 unknown 0.500231643910956 0.50023164360241 0 0 hm5C_site_57565 DeepMRMD:0;iRNA_m5C:0 57566 chr4 166220778 166220778 1 + C G rs138582348 166220777 + 166220757 166220797 41 ATTAATGAAGAGTGTCCGGACCCGGCTGAGGACACCCATGA ATTAATGAAGAGTGTCCGGACGCGGCTGAGGACACCCATGA < 41bp 0.554920102188205 0.829613706096646 0.14700168 0.41133088 prediction 0.549387207816882 Functional Gain - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166220777 chr4:166220778 synonymous SNV . 0 22 hm5C_associated_SNPs_104421 0 0 0 0 1 chromatin 0.500231643894241 0.500315055089347 0 0.00016682239021093 hm5C_site_57566 DeepMRMD:0;iRNA_m5C:0.00016682239021093 57567 chr17 40948143 40948143 1 + A T LUSC 40948147 - 40948127 40948167 41 TGTAGTGTTTCCACCTCTGACAAGTGCCTGAGGATGCACGG TGTAGTGTTTCCACCTCTGACAAGAGCCTGAGGATGCACGG < 41bp 0.519194836651308 0.793881057240916 0.27110082 0.23957223 prediction 0.549372441179217 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40948147 chr17:40948143 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_104422 0 0 0 0 0 chromatin 0.500231716704179 0.50023205788512 0 6.82361880999238e-07 hm5C_site_57567 DeepMRMD:0;iRNA_m5C:6.82361880999238e-07 57568 chr11 7064522 7064522 1 + C A LUAD 7064518 + 7064498 7064538 41 GCTCTCCTAGTCTACCCAACCAAGCCCAGCTGAGAAGACTG GCTCTCCTAGTCTACCCAACCAAGACCAGCTGAGAAGACTG < 41bp 0.369461782092604 0.774677851080018 0.20817265 0.2754128 prediction 0.549355702160035 Functional Gain - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7064518 chr11:7064522 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_104423 0 0 0 0 0 cytosol 0.500231648199069 0.50023164392109 0 0 hm5C_site_57568 DeepMRMD:0;iRNA_m5C:0 57569 chr11 93754555 93754555 1 + T A LGG 93754551 + 93754531 93754571 41 ACAAATGCCTCGGAAGCAGCCAGCTGGCTGCATCTTTCTCC ACAAATGCCTCGGAAGCAGCCAGCAGGCTGCATCTTTCTCC < 41bp 0.533949147799114 0.808624065245082 0.17920995 0.13800642 prediction 0.549349834891936 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93754551 chr11:93754555 synonymous SNV . 0 25 hm5C_associated_SNPs_104424 0 0 0 0 0 exosome 0.500231643921347 0.500231643921094 0 0 hm5C_site_57569 DeepMRMD:0;iRNA_m5C:0 57570 chr4 83827665 83827665 1 + C G rs139976656 83827664 + 83827644 83827684 41 GTCCAAAAAAAGACTTATCTCCGTAAAGAACTACAGGATGA GTCCAAAAAAAGACTTATCTCGGTAAAGAACTACAGGATGA < 41bp 0.513671675330998 0.788343617591114 0.11874473 0.23583874 prediction 0.549343884520231 Functional Gain - THAP9 ENSG00000168152 CDS Human protein_coding chr4:83827664 chr4:83827665 synonymous SNV . 0 22 hm5C_associated_SNPs_104425 0 0 0 0 0 chromatin 0.50023164391287 0.500231643921093 0 1.64468438867971e-11 hm5C_site_57570 DeepMRMD:0;iRNA_m5C:1.64468438867971e-11 57571 chr7 142836665 142836665 1 + C G rs148216903 142836664 + 142836644 142836684 41 TTCGGGAATTAGGCATCTGCCCTGATGATGCTGCTGTAATC TTCGGGAATTAGGCATCTGCCGTGATGATGCTGCTGTAATC < 41bp 0.552246227943052 0.8268899849642 0.096992046 0.11576697 prediction 0.549287514042295 Functional Gain - PIP ENSG00000159763 CDS Human protein_coding chr7:142836664 chr7:142836665 nonsynonymous SNV 0.421 4 22 hm5C_associated_SNPs_104426 0 0 0 0 1 exosome 0.500231144692154 0.499866861561918 0 0 hm5C_site_57571 DeepMRMD:0;iRNA_m5C:0 57572 chr8 9577998 9577998 1 + T A KIRC 9577994 + 9577974 9578014 41 GGCTCTGACCCCTCCATCATCTCCTTACAAGGCTTCACAGC GGCTCTGACCCCTCCATCATCTCCATACAAGGCTTCACAGC < 41bp 0.416781183887723 0.774638394925971 0.24682233 0.96997607 prediction 0.549276789851942 Functional Gain - TNKS ENSG00000173273 CDS Human protein_coding chr8:9577994 chr8:9577998 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_104427 0 0 1 0 1 Nucleus 0.500231643907229 0.500231643505253 0.93995214 0 hm5C_site_57572 DeepMRMD:0.93995214;iRNA_m5C:0 57573 chr19 33077128 33077128 1 + T G rs75083136 33077125 + 33077105 33077145 41 AACACCAATTAAAATACTACCAGTGTAAGTAGAAGGTGTGT AACACCAATTAAAATACTACCAGGGTAAGTAGAAGGTGTGT < 41bp 0.604886209420477 0.87952382783136 0.16742459 0.8954834 prediction 0.549275236821766 Functional Gain - PDCD5 ENSG00000105185 UTR3 Human protein_coding chr19:33077125 chr19:33077128 . . 0 24 hm5C_associated_SNPs_104428 0 0 1 2 0 Ribosome 0.500231559788598 0.50023164392177 0.7909668 1.68266343525403e-07 hm5C_site_57573 DeepMRMD:0.7909668;iRNA_m5C:1.68266343525403e-07 57574 chr20 1099523 1099523 1 + T G rs1803415 1099521 + 1099501 1099541 41 GAAGTGGTGACACACGGTTACTTCGGCTTGGGTGTCGGTGA GAAGTGGTGACACACGGTTACTGCGGCTTGGGTGTCGGTGA < 41bp 0.436483091868581 0.774628655789892 0.6990649 0.7752503 prediction 0.549257311579784 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1099521 chr20:1099523 nonsynonymous SNV 0.165 0 23 hm5C_associated_SNPs_104429 0 0 1 0 1 Ribosome 0.500231643809889 0.500231639872386 0.1523708 0 hm5C_site_57574 DeepMRMD:0.1523708;iRNA_m5C:0 57575 chr10 105037187 105037187 1 + C A rs189225017 105037183 + 105037163 105037203 41 CTATCGCCGGCCGCCGGCGTCCGACGGGCTGGACCTGAGCC CTATCGCCGGCCGCCGGCGTCCGAAGGGCTGGACCTGAGCC < 41bp 0.619005578432043 0.893628290271041 0.6600812 0.75662774 prediction 0.549245423677997 Functional Gain - INA ENSG00000148798 CDS Human protein_coding chr10:105037183 chr10:105037187 nonsynonymous SNV 0.806 1 25 hm5C_associated_SNPs_104430 0 0 1 0 0 exosome 0.500231644294098 0.500231643129547 0.19309308 0 hm5C_site_57575 DeepMRMD:0.19309308;iRNA_m5C:0 57576 chr11 77774954 77774954 1 + C G BRCA 77774953 + 77774933 77774973 41 GGTGCTAACCAAGCGTTACCCCAAGAACTGCCTGCTGACCG GGTGCTAACCAAGCGTTACCCGAAGAACTGCCTGCTGACCG < 41bp 0.553421173485661 0.828027514232662 0.10435352 0.48677787 prediction 0.549212681494003 Functional Gain - THRSP ENSG00000151365 CDS Human protein_coding chr11:77774953 chr11:77774954 synonymous SNV . 0 22 hm5C_associated_SNPs_104431 0 0 0 0 0 nucleolus 0.500231643921093 0.500231643921092 0 0 hm5C_site_57576 DeepMRMD:0;iRNA_m5C:0 57577 chr4 68449311 68449311 1 + C G LUAD 68449310 + 68449290 68449330 41 AGATGTTTTTATACAGTGTCCCGGAAAGAGGCAACTGAGAT AGATGTTTTTATACAGTGTCCGGGAAAGAGGCAACTGAGAT < 41bp 0.479529328236277 0.774596465219311 0.1482375 0.3109153 prediction 0.549192930438621 Functional Gain - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68449310 chr4:68449311 nonsynonymous SNV 0.985 5 22 hm5C_associated_SNPs_104432 0 0 0 0 1 nucleus 0.500231657034804 0.500231643921093 0 0 hm5C_site_57577 DeepMRMD:0;iRNA_m5C:0 57578 chr6 129807650 129807650 1 + G T LUSC 129807654 - 129807634 129807674 41 CCTGTGGAGAGATGCACTTCCAGACGGCCCCTGTTGAGGAG CCTGTGGAGAGATGCACTTCCAGAAGGCCCCTGTTGAGGAG < 41bp 0.392890954154535 0.774581285635053 0.4495664 0.28966126 prediction 0.549162571270107 Functional Gain - LAMA2 ENSG00000196569 CDS Human protein_coding chr6:129807654 chr6:129807650 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_104433 0 0 0 0 1 cytosol 0.50023164392107 0.500231643921092 0 4.50750547997814e-14 hm5C_site_57578 DeepMRMD:0;iRNA_m5C:4.50750547997814e-14 57579 chr1 205033502 205033502 1 + C A BLCA 205033498 + 205033478 205033518 41 CGTGAGGCGTCTGATCCCCGCGGCCCGCGGGGGAGAGATCC CGTGAGGCGTCTGATCCCCGCGGCACGCGGGGGAGAGATCC < 41bp 0.363760508779356 0.774580306781807 0.31610695 0.7088829 prediction 0.549160613563614 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033498 chr1:205033502 synonymous SNV . 0 25 hm5C_associated_SNPs_104434 0 0 0 0 2 exosome 0.50023164392124 0.500231656063577 0.4177658 2.42846740494684e-08 hm5C_site_57579 DeepMRMD:0.4177658;iRNA_m5C:2.42846740494684e-08 57580 chr1 2519810 2519810 1 + C G rs78426182 2519806 + 2519786 2519826 41 AGGCTTCTCCGGAGTTTGGCCAAGCGACCTGGTGTCTTCGC AGGCTTCTCCGGAGTTTGGCCAAGGGACCTGGTGTCTTCGC < 41bp 0.509842611042147 0.784416966939208 0.851168 0.8972204 prediction 0.549148711794123 Functional Gain - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2519806 chr1:2519810 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104435 0 0 0 0 2 Ribosome 0.500231644850085 0.500231643921469 0.0921048 0 hm5C_site_57580 DeepMRMD:0.0921048;iRNA_m5C:0 57581 chr7 74114641 74114641 1 + G T BLCA 74114645 - 74114625 74114665 41 CGGAAGCCCCTGCACTACCACAGCCGACTGGTCTCGCAGCA CGGAAGCCCCTGCACTACCACAGCAGACTGGTCTCGCAGCA < 41bp 0.386001117470978 0.774572183219048 0.35555267 0.41538513 prediction 0.549144366438096 Functional Gain - GTF2I ENSG00000077809 CDS Human other chr7:74114645 chr7:74114641 synonymous SNV . 0 25 hm5C_associated_SNPs_104436 0 0 0 0 0 Cytosol 0.500231646056243 0.50023163061537 0 0 hm5C_site_57581 DeepMRMD:0;iRNA_m5C:0 57582 chr1 152671606 152671606 1 + T G LUAD 152671603 + 152671583 152671623 41 TGAGCCACCACAGGCCCCGTCTCTTCCACCGGCACCGGCAC TGAGCCACCACAGGCCCCGTCTCGTCCACCGGCACCGGCAC < 41bp 0.389958009315933 0.774570179540025 0.110009104 0.14749295 prediction 0.54914035908005 Functional Gain - LCE2A ENSG00000187173 CDS Human protein_coding chr1:152671603 chr1:152671606 nonsynonymous SNV 0.008 1 24 hm5C_associated_SNPs_104437 0 0 0 0 0 unknown 0.500231643920714 0.50023164392088 0 3.32178728967847e-13 hm5C_site_57582 DeepMRMD:0;iRNA_m5C:3.32178728967847e-13 57583 chr11 59857220 59857220 1 + C G rs149172443 59857216 + 59857196 59857236 41 CCCCAGGAAGTATCTTCAGGCAGACTATTGAAGTCGGCCTC CCCCAGGAAGTATCTTCAGGCAGAGTATTGAAGTCGGCCTC < 41bp 0.483102322581818 0.774564850595739 0.08044985 0.53241855 prediction 0.549129701191477 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59857216 chr11:59857220 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_104438 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.0648371000000001 0 hm5C_site_57583 DeepMRMD:0.0648371000000001;iRNA_m5C:0 57584 chr13 49281679 49281679 1 + C G rs61735169 49281675 + 49281655 49281695 41 AGAATCGGGGCTGCGGGTTTCTCACAGGAAGGCACTGACCA AGAATCGGGGCTGCGGGTTTCTCAGAGGAAGGCACTGACCA < 41bp 0.496266070657947 0.774551585077941 0.16993365 0.28400096 prediction 0.549103170155882 Functional Gain - CYSLTR2 ENSG00000152207 CDS Human protein_coding chr13:49281675 chr13:49281679 nonsynonymous SNV 0.634 0 25 hm5C_associated_SNPs_104439 0 0 0 0 0 exosome 0.500233195799227 0.500231643929063 0 0 hm5C_site_57584 DeepMRMD:0;iRNA_m5C:0 57585 chr10 25305513 25305513 1 + C A rs184042808 25305509 + 25305489 25305529 41 ACAGTGAGAAAGGAGAGTCACGTGCCCTGCGCGAGGCCGCT ACAGTGAGAAAGGAGAGTCACGTGACCTGCGCGAGGCCGCT < 41bp 0.435163090870072 0.774538543837008 0.21298555 0.32778347 prediction 0.549077087674015 Functional Gain - THNSL1 ENSG00000151023;ENSG00000185875 upstream Human other chr10:25305509 chr10:25305513 . . 0 25 hm5C_associated_SNPs_104440 0 0 0 0 0 Cytosol 0.500232351793927 0.500232119274335 0 0 hm5C_site_57585 DeepMRMD:0;iRNA_m5C:0 57586 chr6 50697004 50697004 1 + C A UCEC 50697000 + 50696980 50697020 41 AGACGGAAAGCAGCTAATGTCACCCTCCTTACTTCCTTGGT AGACGGAAAGCAGCTAATGTCACCATCCTTACTTCCTTGGT < 41bp 0.358060089153787 0.774536934066654 0.06740743 0.1329517 prediction 0.549073868133308 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50697000 chr6:50697004 nonsynonymous SNV 0.990 5 25 hm5C_associated_SNPs_104441 0 0 0 0 2 unknown 0.500231643921191 0.500231643921092 0 0 hm5C_site_57586 DeepMRMD:0;iRNA_m5C:0 57587 chr19 54515441 54515441 1 + T A LUAD 54515437 + 54515417 54515457 41 CCCAAGCGGGGGCACCGGGCCACCTAGAGCCACGCGTGAGA CCCAAGCGGGGGCACCGGGCCACCAAGAGCCACGCGTGAGA < 41bp 0.456678318833483 0.774531319497321 0.32571912 0.40433246 prediction 0.549062638994643 Functional Gain - CACNG6 ENSG00000130433 CDS Human protein_coding chr19:54515437 chr19:54515441 stoploss 0.533 0 25 hm5C_associated_SNPs_104442 0 0 0 0 0 exosome 0.500231644468639 0.500231698516731 0 1.08096185114093e-07 hm5C_site_57587 DeepMRMD:0;iRNA_m5C:1.08096185114093e-07 57588 chr18 71816260 71816260 1 + C A LIHC 71816256 + 71816236 71816276 41 ATCTGGACGCAGGGACCGAGCCCCCGAAAAGCAAAGGAGGA ATCTGGACGCAGGGACCGAGCCCCAGAAAAGCAAAGGAGGA < 41bp 0.368528195315597 0.774529674261784 0.09824684 0.18605515 prediction 0.549059348523568 Functional Gain - TIMM21 ENSG00000075336 CDS Human protein_coding chr18:71816256 chr18:71816260 synonymous SNV . 0 25 hm5C_associated_SNPs_104443 0 0 1 0 1 Endoplasmic reticulum 0.500231643837999 0.500231644002767 0 3.29535065901609e-10 hm5C_site_57588 DeepMRMD:0;iRNA_m5C:3.29535065901609e-10 57589 chr12 6647516 6647516 1 + T G rs552128740 6647513 + 6647493 6647533 41 CGCACCTTGTCATGTACCATCAATAAAGTACCCTGTGCTCA CGCACCTTGTCATGTACCATCAAGAAAGTACCCTGTGCTCA < 41bp 0.455189711293343 0.774517254730233 0.06984851 0.30977538 prediction 0.549034509460465 Functional Gain - GAPDH ENSG00000269968 ncRNA_exonic Human antisense chr12:6647513 chr12:6647516 . . 0 24 hm5C_associated_SNPs_104444 0 0 1 1 0 Ribosome 0.500231643920988 0.500231643921086 0 1.96287430753728e-13 hm5C_site_57589 DeepMRMD:0;iRNA_m5C:1.96287430753728e-13 57590 chr5 148733364 148733364 1 + C A rs168463 148733360 + 148733340 148733380 41 AGCTATAGTAGTAAGAATCTCAAGCTGAAGGGCTTTGGGGA AGCTATAGTAGTAAGAATCTCAAGATGAAGGGCTTTGGGGA < 41bp 0.5848793336678 0.859388420361417 0.2710697 0.3802213 prediction 0.549018173387234 Functional Gain - GRPEL2-AS1 ENSG00000253618 ncRNA_intronic Human antisense chr5:148733360 chr5:148733364 . . 0 25 hm5C_associated_SNPs_104445 0 0 1 0 0 unknown 0.500231683128576 0.500231642938339 0 0 hm5C_site_57590 DeepMRMD:0;iRNA_m5C:0 57591 chr16 68279444 68279444 1 + C G SKCM 68279443 + 68279423 68279463 41 CTCCCGGCCGGACGTCACCCCCCAGTGGTGCTGGGTGAGGC CTCCCGGCCGGACGTCACCCCGCAGTGGTGCTGGGTGAGGC < 41bp 0.469533726669832 0.774501862570954 0.06518978 0.12320474 prediction 0.549003725141909 Functional Gain - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68279443 chr16:68279444 nonsynonymous SNV 0.813 4 22 hm5C_associated_SNPs_104446 0 0 1 0 1 Ribosome 0.50023165078628 0.500231683764995 0 6.59574286299147e-08 hm5C_site_57591 DeepMRMD:0;iRNA_m5C:6.59574286299147e-08 57592 chr1 209951495 209951495 1 + T A LUAD 209951491 + 209951471 209951511 41 CAGAGGCAGAGAAACTCACCCTGGTGACCAGAGTACAGCAG CAGAGGCAGAGAAACTCACCCTGGAGACCAGAGTACAGCAG < 41bp 0.575905198624313 0.850402069525112 0.36083072 0.51790386 prediction 0.548993741801599 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209951491 chr1:209951495 nonsynonymous SNV 0.948 0 25 hm5C_associated_SNPs_104447 0 0 0 0 1 exosome 0.500231643921093 0.500231643921093 0.03580772 0 hm5C_site_57592 DeepMRMD:0.03580772;iRNA_m5C:0 57593 chr19 55105923 55105923 1 + C A rs10416264 55105919 + 55105899 55105939 41 CTTCCAGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGC CTTCCAGGGCTGAGTCTGGGCCCCAGGACCCACGTGCAGGC < 41bp 0.365343603839 0.774486031151595 0.10498169 0.13473105 prediction 0.548972062303191 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55105919 chr19:55105923 synonymous SNV . 0 25 hm5C_associated_SNPs_104448 0 0 0 0 2 exosome 0.500231643918701 0.500231643930239 0 2.30766517006487e-11 hm5C_site_57593 DeepMRMD:0;iRNA_m5C:2.30766517006487e-11 57594 chr8 110657533 110657533 1 + C G rs138417985 110657529 + 110657509 110657549 41 CTCTCGTACCGGAGCCCAGCCAAGCCAGTGCGTCAGGACCG CTCTCGTACCGGAGCCCAGCCAAGGCAGTGCGTCAGGACCG < 41bp 0.521588105185211 0.79607335671816 0.7369373 0.8678264 prediction 0.548970503065898 Functional Gain - LOC100132813 ENSG00000248050 CDS Human antisense chr8:110657529 chr8:110657533 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_104449 0 0 0 0 0 unknown 0.500231643922844 0.500231643921071 0.2617782 0 hm5C_site_57594 DeepMRMD:0.2617782;iRNA_m5C:0 57595 chr9 126140052 126140052 1 + C G rs180836322 126140048 + 126140028 126140068 41 ATGCGAGGGAACCACAGACCCACCCGCCCCCTCAGCCGGAG ATGCGAGGGAACCACAGACCCACCGGCCCCCTCAGCCGGAG < 41bp 0.50364462570708 0.778124023331976 0.0811902 0.14404443 prediction 0.548958795249791 Functional Gain - CRB2 ENSG00000148204 UTR3 Human protein_coding chr9:126140048 chr9:126140052 . . 0 25 hm5C_associated_SNPs_104450 0 0 0 0 0 exosome 0.500231571939809 0.500231643820419 0 1.43761219817407e-07 hm5C_site_57595 DeepMRMD:0;iRNA_m5C:1.43761219817407e-07 57596 chr2 128409306 128409306 1 + C A UCEC 128409302 + 128409282 128409322 41 GAAGGGAAAACCAACGAGAGCTCGCTGAGTGCCAAGTCAGA GAAGGGAAAACCAACGAGAGCTCGATGAGTGCCAAGTCAGA < 41bp 0.363965660644798 0.774478769479018 0.034122497 0.030923605 prediction 0.548957538958037 Functional Gain - GPR17 ENSG00000144230 CDS Human protein_coding chr2:128409302 chr2:128409306 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_104451 0 0 0 0 0 Endoplasmic reticulum 0.500231643917119 0.500231643921092 0 7.94653232105702e-12 hm5C_site_57596 DeepMRMD:0;iRNA_m5C:7.94653232105702e-12 57597 chr15 74467314 74467314 1 + C A rs199657194 74467310 + 74467290 74467330 41 TTCCAGATCGCCGACTGTGCCTACCGCGACCTAGAATCCGT TTCCAGATCGCCGACTGTGCCTACAGCGACCTAGAATCCGT < 41bp 0.37022287033618 0.77447837454412 0.043073386 0.8848501 prediction 0.548956749088239 Functional Gain - ISLR ENSG00000129009 CDS Human protein_coding chr15:74467310 chr15:74467314 nonsynonymous SNV 0.940 1 25 hm5C_associated_SNPs_104452 0 0 0 0 0 Cytosol 0.500231643921723 0.500231643923044 0.7697002 2.64321897702757e-12 hm5C_site_57597 DeepMRMD:0.7697002;iRNA_m5C:2.64321897702757e-12 57598 chr1 41236342 41236342 1 + C G LUSC 41236341 + 41236321 41236361 41 AGGGAGCTGCATGCCCCTCTCCCAGGGATGACCTCACTCTC AGGGAGCTGCATGCCCCTCTCGCAGGGATGACCTCACTCTC < 41bp 0.550996950160024 0.825460033719526 0.8682314 0.9374691 prediction 0.548926167119004 Functional Gain - NFYC ENSG00000066136 CDS Human protein_coding chr1:41236341 chr1:41236342 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_104453 0 0 1 0 0 Ribosome 0.500231643921972 0.500231644127307 0.1384754 4.10671496808845e-10 hm5C_site_57598 DeepMRMD:0.1384754;iRNA_m5C:4.10671496808845e-10 57599 chr20 34092171 34092171 1 + C G rs41290926 34092170 + 34092150 34092190 41 CTCGAGCAGGCAGAATTGAGCCGCAGTCTGGAGGCCAGCAC CTCGAGCAGGCAGAATTGAGCGGCAGTCTGGAGGCCAGCAC < 41bp 0.483169373128184 0.774457668871191 0.80005556 0.8994434 prediction 0.548915337742381 Functional Gain - CEP250 ENSG00000126001 CDS Human protein_coding chr20:34092170 chr20:34092171 nonsynonymous SNV 0.329 0 22 hm5C_associated_SNPs_104454 0 0 0 0 0 Cytosol 0.500231638241471 0.50023164193351 0.19877568 7.38407801570418e-09 hm5C_site_57599 DeepMRMD:0.19877568;iRNA_m5C:7.38407801570418e-09 57600 chr14 20216334 20216334 1 + C A HNSC 20216330 + 20216310 20216350 41 GCTTCTCACCTGACAGTGGTCAGCCTGATCTTCGTGCCATG GCTTCTCACCTGACAGTGGTCAGCATGATCTTCGTGCCATG < 41bp 0.62420672008325 0.898658625729566 0.32848155 0.29556862 prediction 0.548903811292633 Functional Gain - OR4Q3 ENSG00000182652 CDS Human protein_coding chr14:20216330 chr14:20216334 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_104455 0 0 0 0 0 unknown 0.500231635285176 0.500232066834123 0 8.63097894931997e-07 hm5C_site_57600 DeepMRMD:0;iRNA_m5C:8.63097894931997e-07 57601 chr21 35742928 35742928 1 + C A LUAD 35742924 + 35742904 35742944 41 GCTGAGAACTTCTACTATGTCATCCTGTACCTCATGGTGAT GCTGAGAACTTCTACTATGTCATCATGTACCTCATGGTGAT < 41bp 0.367477503479843 0.774419634497832 0.022497892 0.072491586 prediction 0.548839268995664 Functional Gain - KCNE2 ENSG00000159197 CDS Human protein_coding chr21:35742924 chr21:35742928 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_104456 0 0 0 0 0 exosome 0.500231643921092 0.50023167019049 0 5.25387953143053e-08 hm5C_site_57601 DeepMRMD:0;iRNA_m5C:5.25387953143053e-08 57602 chr2 201523899 201523899 1 + T G SKCM 201523897 + 201523877 201523917 41 TTAAAATTCAGGTGGTCAGCCGTGAATTAAGAATGCCAATG TTAAAATTCAGGTGGTCAGCCGGGAATTAAGAATGCCAATG < 41bp 0.451749901326966 0.774411467611347 0.3040133 0.899546 prediction 0.548822935222694 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201523897 chr2:201523899 synonymous SNV . 0 23 hm5C_associated_SNPs_104457 0 0 0 0 1 Endoplasmic reticulum 0.500231643931501 0.500231643921229 0.799092 0 hm5C_site_57602 DeepMRMD:0.799092;iRNA_m5C:0 57603 chr20 31805408 31805408 1 + C A rs73904636 31805404 + 31805384 31805424 41 GCTGGCCTTGCCCTTGGCACCACACAAGCAGCCTTGGCCTG GCTGGCCTTGCCCTTGGCACCACAAAAGCAGCCTTGGCCTG < 41bp 0.634570842940275 0.908980103641073 0.05390358 0.08627361 prediction 0.548818521401597 Functional Gain - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31805404 chr20:31805408 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_104458 0 0 0 0 1 unknown 0.500231617262352 0.500231643944647 0 5.33645896361179e-08 hm5C_site_57603 DeepMRMD:0;iRNA_m5C:5.33645896361179e-08 57604 chr3 32208467 32208467 1 + T G rs6791603 32208465 + 32208445 32208485 41 GGCGGTCCTCGGTGCAGCAGCATCAGCTTCACTTGTGGGGG GGCGGTCCTCGGTGCAGCAGCAGCAGCTTCACTTGTGGGGG < 41bp 0.572505718225659 0.846902694147707 0.15719497 0.42681244 prediction 0.548793951844096 Functional Gain - GPD1L ENSG00000152642 UTR3 Human protein_coding chr3:32208465 chr3:32208467 . . 0 23 hm5C_associated_SNPs_104459 1 0 1 0 0 Cytosol 0.500231643420119 0.500231650907667 0 1.49750951639049e-08 hm5C_site_57604 DeepMRMD:0;iRNA_m5C:1.49750951639049e-08 Brugada syndrome Brugada syndrome 57605 chr12 119563266 119563266 1 + C A LUAD 119563262 + 119563242 119563282 41 GGTCCCAGAGCTCGGAGTCCCGCCCCTCAAGCTGTGAGAGC GGTCCCAGAGCTCGGAGTCCCGCCACTCAAGCTGTGAGAGC < 41bp 0.352424086869885 0.774396612608569 0.12537786 0.8508543 prediction 0.548793225217137 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119563262 chr12:119563266 nonsynonymous SNV 0.605 1 25 hm5C_associated_SNPs_104460 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231924800089 0.7017086 5.61757993677858e-07 hm5C_site_57605 DeepMRMD:0.7017086;iRNA_m5C:5.61757993677858e-07 57606 chr9 40705798 40705798 1 + C A rs11261518 40705794 + 40705774 40705814 41 AGGATGAAGGCGTCCAGCTACTGCCATCAAAGAAACAGCCT AGGATGAAGGCGTCCAGCTACTGCAATCAAAGAAACAGCCT < 41bp 0.368658697442538 0.774379603799303 0.007518381 0.08235797 prediction 0.548759207598607 Functional Gain - SPATA31A3 ENSG00000147926 CDS Human other chr9:40705794 chr9:40705798 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_104461 0 0 0 0 0 unknown 0.500231644283434 0.500233204523799 0 3.12048073092264e-06 hm5C_site_57606 DeepMRMD:0;iRNA_m5C:3.12048073092264e-06 57607 chr12 5154720 5154720 1 + C A LUSC 5154716 + 5154696 5154736 41 AACCCATTTCTCTAGCATCCCTGACGCCTTCTGGTGGGCAG AACCCATTTCTCTAGCATCCCTGAAGCCTTCTGGTGGGCAG < 41bp 0.371794679193942 0.774373206110973 0.039428115 0.08100751 prediction 0.548746412221945 Functional Gain - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5154716 chr12:5154720 nonsynonymous SNV 0.985 2 25 hm5C_associated_SNPs_104462 0 0 0 0 0 exosome 0.500231643918648 0.500231643920734 0 4.17132994812164e-12 hm5C_site_57607 DeepMRMD:0;iRNA_m5C:4.17132994812164e-12 57608 chr22 21138494 21138494 1 + C G BRCA 21138493 + 21138473 21138513 41 CCCTCGAAGCGCAACTGACACCCCGGGTGGTGGAGAGATGG CCCTCGAAGCGCAACTGACACGCCGGGTGGTGGAGAGATGG < 41bp 0.473079654698407 0.774371882680107 0.024623603 0.057486683 prediction 0.548743765360215 Functional Gain - SERPIND1 ENSG00000099937 CDS Human protein_coding chr22:21138493 chr22:21138494 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_104463 0 0 1 0 1 cytosol 0.500231643921093 0.500231643920781 0 0 hm5C_site_57608 DeepMRMD:0;iRNA_m5C:0 57609 chr11 64893365 64893365 1 + T A rs11546366 64893361 + 64893341 64893381 41 CTGAGGCCCAGCCGAGCAGCCTGCTTGTCAGCATGCCCTGT CTGAGGCCCAGCCGAGCAGCCTGCATGTCAGCATGCCCTGT < 41bp 0.549276685415493 0.823644709115925 0.046172082 0.14367765 prediction 0.548736047400863 Functional Gain - MRPL49 ENSG00000149792 UTR3 Human protein_coding chr11:64893361 chr11:64893365 . . 0 25 hm5C_associated_SNPs_104464 0 0 1 0 0 Ribosome 0.500231643915991 0.50023164259863 0 0 hm5C_site_57609 DeepMRMD:0;iRNA_m5C:0 57610 chr6 27101203 27101203 1 + C A UCEC 27101199 + 27101179 27101219 41 CCAACATTCAGGCCGTGCTACTGCCCAAAAAGACTGAGAGC CCAACATTCAGGCCGTGCTACTGCACAAAAAGACTGAGAGC < 41bp 0.384106090802045 0.774361853214009 0.22175261 0.19615689 prediction 0.548723706428019 Functional Gain - HIST1H2AG ENSG00000196787 CDS Human protein_coding chr6:27101199 chr6:27101203 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_104465 0 0 1 0 0 Ribosome 0.500231643921108 0.500231643921092 0 0 hm5C_site_57610 DeepMRMD:0;iRNA_m5C:0 57611 chr2 219300070 219300070 1 + C A rs144276467 219300066 + 219300046 219300086 41 TGGTTGCTGACACCATCTCCCGGACGGAGAAGCAAGTGGTG TGGTTGCTGACACCATCTCCCGGAAGGAGAAGCAAGTGGTG < 41bp 0.373903268510356 0.774360653892205 0.7551991 0.822491 prediction 0.548721307784409 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219300066 chr2:219300070 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_104466 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0.1345838 0 hm5C_site_57611 DeepMRMD:0.1345838;iRNA_m5C:0 57612 chr16 2036361 2036361 1 + C A rs146752626 2036357 + 2036337 2036377 41 TACCCTGGCGCCTCACTCCTCACACGGGAAGACAGCGGGCC TACCCTGGCGCCTCACTCCTCACAAGGGAAGACAGCGGGCC < 41bp 0.393143319941527 0.774358197058153 0.15432495 0.31282127 prediction 0.548716394116305 Functional Gain - GFER ENSG00000261790 ncRNA_exonic Human lincRNA chr16:2036357 chr16:2036361 . . 0 25 hm5C_associated_SNPs_104467 0 0 1 0 0 Cytosol 0.500231487031047 0.500231643921093 0 3.13780091465432e-07 hm5C_site_57612 DeepMRMD:0;iRNA_m5C:3.13780091465432e-07 57613 chr11 125787060 125787060 1 + C A UCEC 125787056 + 125787036 125787076 41 AACAACATCCGGCAATATTACGTGCTGTGTGAGCACAGGAA AACAACATCCGGCAATATTACGTGATGTGTGAGCACAGGAA < 41bp 0.359144190737468 0.774351127921151 0.34373856 0.37827498 prediction 0.548702255842302 Functional Gain - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125787056 chr11:125787060 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_104468 0 0 0 0 1 exosome 0.500231662363982 0.500231640492463 0 0 hm5C_site_57613 DeepMRMD:0;iRNA_m5C:0 57614 chr5 177547344 177547344 1 + C G CESC 177547343 + 177547323 177547363 41 AGCCCCGGGCCCCGGGCCAGCCAGGCCCGGGCACAGCTGCT AGCCCCGGGCCCCGGGCCAGCGAGGCCCGGGCACAGCTGCT < 41bp 0.537922472916535 0.812258244969818 0.8978766 0.92194474 prediction 0.548671544106564 Functional Gain - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177547343 chr5:177547344 nonsynonymous SNV 0.946 0 22 hm5C_associated_SNPs_104469 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.04813628 0 hm5C_site_57614 DeepMRMD:0.04813628;iRNA_m5C:0 57615 chr15 45409319 45409319 1 + C G BLCA 45409315 + 45409295 45409335 41 GTTCTGCTTCTGGCTCCTCTCCAACGTGCTGCTCTCCACGC GTTCTGCTTCTGGCTCCTCTCCAAGGTGCTGCTCTCCACGC < 41bp 0.495153307252872 0.774334021193598 0.6063388 0.9425706 prediction 0.548668042387197 Functional Gain - DUOXA2 ENSG00000140274 CDS Human protein_coding chr15:45409315 chr15:45409319 nonsynonymous SNV 0.644 3 25 hm5C_associated_SNPs_104470 0 0 0 0 0 unknown 0.500231643967781 0.50023159797698 0.6724636 0 hm5C_site_57615 DeepMRMD:0.6724636;iRNA_m5C:0 57616 chrX 48547364 48547364 1 + C A UCEC 48547360 + 48547340 48547380 41 ATGGACCAGCCCCTCCCCCACTCCCTCCTGCTCTGGTGCCT ATGGACCAGCCCCTCCCCCACTCCATCCTGCTCTGGTGCCT < 41bp 0.353932015840865 0.774322861715503 0.7679859 0.9415779 prediction 0.548645723431006 Functional Gain - WAS ENSG00000015285 CDS Human protein_coding chrX:48547360 chrX:48547364 nonsynonymous SNV 0.784 4 25 hm5C_associated_SNPs_104471 0 0 0 0 1 Endoplasmic reticulum 0.500231657029376 0.50023164392868 0.347184 0 hm5C_site_57616 DeepMRMD:0.347184;iRNA_m5C:0 57617 chr18 72187612 72187612 1 + C G rs890336 72187611 + 72187591 72187631 41 CGGAAAGTTCTGGTTGTCGGCCGGGCACCACGGCTCACACC CGGAAAGTTCTGGTTGTCGGCGGGGCACCACGGCTCACACC < 41bp 0.546553554137025 0.820873351995437 0.6355901 0.91073126 prediction 0.548639595716824 Functional Gain - CNDP2 ENSG00000133313 UTR3 Human protein_coding chr18:72187611 chr18:72187612 . . 0 22 hm5C_associated_SNPs_104472 0 0 1 0 0 Ribosome 0.500231643892938 0.500231643921093 0.55028232 5.6310289764383e-11 hm5C_site_57617 DeepMRMD:0.55028232;iRNA_m5C:5.6310289764383e-11 57618 chr9 127115819 127115819 1 + A C rs556621249 127115822 - 127115802 127115842 41 AGGTGGTGAGCATTGAGGCCCAGTAAGACACTCATGTGGCT AGGTGGTGAGCATTGAGGCCCAGGAAGACACTCATGTGGCT < 41bp 0.407688668591632 0.77431401321465 0.83513945 0.8751936 prediction 0.5486280264293 Functional Gain - LOC100129034 ENSG00000136930 UTR3 Human protein_coding chr9:127115822 chr9:127115819 . . 0 24 hm5C_associated_SNPs_104473 0 0 1 0 0 unknown 0.500231643921092 0.500231643920184 0.0801083 0 hm5C_site_57618 DeepMRMD:0.0801083;iRNA_m5C:0 57619 chr16 319761 319761 1 + C G rs60300448 319760 + 319740 319780 41 CCAAGGCAGACGCAGGGAGACCTGGGCTCCCGTCTGCCTGG CCAAGGCAGACGCAGGGAGACGTGGGCTCCCGTCTGCCTGG < 41bp 0.519428349686287 0.793740798306917 0.88048947 0.9244015 prediction 0.548624897241262 Functional Gain - RGS11 ENSG00000167930;ENSG00000269881 UTR3 Human other chr16:319760 chr16:319761 . . 0 22 hm5C_associated_SNPs_104474 0 0 0 0 0 exosome 0.500231643919704 0.500231636893266 0.08782406 0 hm5C_site_57619 DeepMRMD:0.08782406;iRNA_m5C:0 57620 chr19 49842077 49842077 1 + T A STAD 49842073 + 49842053 49842093 41 TACAACTTGTCGGCGACCAACGACTCCACAATCCTAGATAA TACAACTTGTCGGCGACCAACGACACCACAATCCTAGATAA < 41bp 0.443280948234295 0.77430793976211 0.22342175 0.36747193 prediction 0.54861587952422 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49842073 chr19:49842077 nonsynonymous SNV 0.698 2 25 hm5C_associated_SNPs_104475 0 0 0 0 0 Endoplasmic reticulum 0.500231643900679 0.500231643580863 0 0 hm5C_site_57620 DeepMRMD:0;iRNA_m5C:0 57621 chr5 96237258 96237258 1 + T G BLCA 96237256 + 96237236 96237276 41 GGTCAAAGAGATGATGACTACATGGACTCTCCAGAAAGGAA GGTCAAAGAGATGATGACTACAGGGACTCTCCAGAAAGGAA < 41bp 0.433152242839786 0.774304804471907 0.033194005 0.1344899 prediction 0.548609608943813 Functional Gain - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96237256 chr5:96237258 nonsynonymous SNV 0.952 4 23 hm5C_associated_SNPs_104476 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57621 DeepMRMD:0;iRNA_m5C:0 57622 chrX 15552367 15552367 1 + T A LAML 15552363 + 15552343 15552383 41 AAGGAACTGTCAAACATTACCACGTGCATACAAATGCTGAG AAGGAACTGTCAAACATTACCACGAGCATACAAATGCTGAG < 41bp 0.462346396450428 0.774301923961333 0.26298463 0.11430153 prediction 0.548603847922667 Functional Gain - BMX ENSG00000102010 CDS Human protein_coding chrX:15552363 chrX:15552367 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_104477 0 0 0 0 2 cytosol 0.500229990613917 0.500231658513173 0 3.33579851008459e-06 hm5C_site_57622 DeepMRMD:0;iRNA_m5C:3.33579851008459e-06 57623 chr1 248309291 248309291 1 + T G COAD 248309289 + 248309269 248309309 41 GTGTCTGTATTCTACACCATCCTCACTCCCATGCTGAATCC GTGTCTGTATTCTACACCATCCGCACTCCCATGCTGAATCC < 41bp 0.456491625405923 0.77429921771935 0.02115354 0.021758825 prediction 0.5485984354387 Functional Gain - OR2M5 ENSG00000162727 CDS Human protein_coding chr1:248309289 chr1:248309291 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_104478 0 0 0 0 0 unknown 0.500231643920534 0.500230756472847 0 0 hm5C_site_57623 DeepMRMD:0;iRNA_m5C:0 57624 chr4 43032478 43032478 1 + T C LUSC 43032476 + 43032456 43032496 41 ATGTCCATGTTTCGAAACTGCTTCACAGACTCTTTCAAAGC ATGTCCATGTTTCGAAACTGCTCCACAGACTCTTTCAAAGC < 41bp 0.500733551731785 0.775031384394537 0.03949973 0.9021332 prediction 0.548595665325504 Functional Gain - GRXCR1 ENSG00000215203 CDS Human protein_coding chr4:43032476 chr4:43032478 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_104479 0 0 0 0 0 unknown 0.500231649174457 0.500231640085395 0.8042664 0 hm5C_site_57624 DeepMRMD:0.8042664;iRNA_m5C:0 57625 chr11 76507258 76507258 1 + C G LGG 76507254 + 76507234 76507274 41 GCCTGGAACCGGCTCCATGCCGTGCCCAACCTCCGAGACTT GCCTGGAACCGGCTCCATGCCGTGGCCAACCTCCGAGACTT < 41bp 0.5084127561969 0.782710535145352 0.08502498 0.4239761 prediction 0.548595557896903 Functional Gain - TSKU ENSG00000182704 CDS Human protein_coding chr11:76507254 chr11:76507258 nonsynonymous SNV 0.054 4 25 hm5C_associated_SNPs_104480 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921169 0 1.53654866608122e-13 hm5C_site_57625 DeepMRMD:0;iRNA_m5C:1.53654866608122e-13 57626 chrX 12904932 12904932 1 + T A LUAD 12904928 + 12904908 12904948 41 TCTTTCAGTGAATAAAATATCACCTTCAGGAGATTCAAGTG TCTTTCAGTGAATAAAATATCACCATCAGGAGATTCAAGTG < 41bp 0.452639644981241 0.774265830248168 0.01660949 0.0060103536 prediction 0.548531660496336 Functional Gain - TLR7 ENSG00000196664 CDS Human protein_coding chrX:12904928 chrX:12904932 synonymous SNV . 0 25 hm5C_associated_SNPs_104481 0 0 0 0 0 nucleoplasm 0.50023164403692 0.50023167799703 0 6.79202196707251e-08 hm5C_site_57626 DeepMRMD:0;iRNA_m5C:6.79202196707251e-08 57627 chr16 55794579 55794579 1 + C G rs377365773 55794575 + 55794555 55794595 41 TGTGGCTCCCTGCTCTTGTCCTGGCCACTCTCGCTGCTTCC TGTGGCTCCCTGCTCTTGTCCTGGGCACTCTCGCTGCTTCC < 41bp 0.530460978229975 0.804725379016265 0.7040176 0.7326554 prediction 0.548528801572579 Functional Gain - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55794575 chr16:55794579 . . 0 25 hm5C_associated_SNPs_104482 0 0 0 0 1 unknown 0.500231643921022 0.500231643920841 0.0572755999999999 0 hm5C_site_57627 DeepMRMD:0.0572755999999999;iRNA_m5C:0 57628 chr8 27394366 27394366 1 + C G rs13439459 27394362 + 27394342 27394382 41 TTTCAAAAGCCTCTTCAGAGCAAGCGATGAGGTGAGGGGTG TTTCAAAAGCCTCTTCAGAGCAAGGGATGAGGTGAGGGGTG < 41bp 0.508252687738256 0.7825053458584 0.81168854 0.8987418 prediction 0.548505316240287 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27394362 chr8:27394366 nonsynonymous SNV 0.593 1 25 hm5C_associated_SNPs_104483 0 0 1 0 2 Cytosol 0.500231643921158 0.500231643921332 0.17410652 3.46611628287974e-13 hm5C_site_57628 DeepMRMD:0.17410652;iRNA_m5C:3.46611628287974e-13 57629 chr7 72848629 72848629 1 + C A LUSC 72848625 + 72848605 72848645 41 TTCTTCCTGTGCTCGCTCTACGCGCCCATGTGCACCGACCA TTCTTCCTGTGCTCGCTCTACGCGACCATGTGCACCGACCA < 41bp 0.619842232898644 0.894089895100209 0.019542962 0.038796723 prediction 0.548495324403131 Functional Gain - FZD9 ENSG00000188763 CDS Human protein_coding chr7:72848625 chr7:72848629 nonsynonymous SNV 0.962 4 25 hm5C_associated_SNPs_104484 0 0 0 0 0 exosome 0.500231612703368 0.500231561398126 0 0 hm5C_site_57629 DeepMRMD:0;iRNA_m5C:0 57630 chr5 140531307 140531307 1 + C A LUAD 140531303 + 140531283 140531323 41 CCCAGGTCACCTACTCGCTGCTGCCGCCCCAGGACCCGCAC CCCAGGTCACCTACTCGCTGCTGCAGCCCCAGGACCCGCAC < 41bp 0.371484548728648 0.774240847854013 0.055791646 0.07090473 prediction 0.548481695708025 Functional Gain - PCDHB6 ENSG00000113211 CDS Human protein_coding chr5:140531303 chr5:140531307 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_104485 0 0 0 0 0 exosome 0.5002316439211 0.500231644166914 0 4.91627183407672e-10 hm5C_site_57630 DeepMRMD:0;iRNA_m5C:4.91627183407672e-10 57631 chr20 57766154 57766154 1 + C G CESC 57766153 + 57766133 57766173 41 CTCCTGGCCCTCCAGGGGCCCCAGGTGGCCAGGCCTCACCT CTCCTGGCCCTCCAGGGGCCCGAGGTGGCCAGGCCTCACCT < 41bp 0.540885481900721 0.815125481481426 0.92412806 0.9316231 prediction 0.54847999916141 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57766153 chr20:57766154 nonsynonymous SNV 0.368 2 22 hm5C_associated_SNPs_104486 0 0 0 0 0 exosome 0.500231643915794 0.500231638338024 0.01499008 0 hm5C_site_57631 DeepMRMD:0.01499008;iRNA_m5C:0 57632 chr4 1388724 1388724 1 + C G rs76728908 1388723 + 1388703 1388743 41 GCCCGCCTGCTCACACGTGCCCATGCGGAGTGCCCGCCTGC GCCCGCCTGCTCACACGTGCCGATGCGGAGTGCCCGCCTGC < 41bp 0.519874694758197 0.794114196451211 0.05504909 0.0921863 prediction 0.548479003386028 Functional Gain - CRIPAK ENSG00000179979 CDS Human protein_coding chr4:1388723 chr4:1388724 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_104487 0 0 0 0 0 chromatin 0.500231619645856 0.500231718277681 0 1.97263650525414e-07 hm5C_site_57632 DeepMRMD:0;iRNA_m5C:1.97263650525414e-07 57633 chr2 220110255 220110255 1 + C G rs3755052 220110251 + 220110231 220110271 41 CTGGCCCGAGCCAGGTCAGTCCGGCAGTGCAGATGGCCCAT CTGGCCCGAGCCAGGTCAGTCCGGGAGTGCAGATGGCCCAT < 41bp 0.528343206217355 0.802575662139388 0.75605404 0.89406145 prediction 0.548464911844065 Functional Gain - STK16 ENSG00000115661 UTR5 Human protein_coding chr2:220110251 chr2:220110255 . . 0 25 hm5C_associated_SNPs_104488 0 0 1 0 0 Ribosome 0.500231643856967 0.500231643921125 0.27601482 1.28316246517102e-10 hm5C_site_57633 DeepMRMD:0.27601482;iRNA_m5C:1.28316246517102e-10 57634 chr1 110086428 110086428 1 + C G LUAD 110086424 + 110086404 110086444 41 CAACGCTCCGAATCTCTCAGCAGCCGCTCCACGATGGTCAC CAACGCTCCGAATCTCTCAGCAGCGGCTCCACGATGGTCAC < 41bp 0.504310780553745 0.778534233931358 0.7517328 0.8847754 prediction 0.548446906755226 Functional Gain - GPR61 ENSG00000156097 CDS Human protein_coding chr1:110086424 chr1:110086428 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104489 0 0 0 0 0 exosome 0.500231643702699 0.500231644168698 0.2660852 9.3199847839287e-10 hm5C_site_57634 DeepMRMD:0.2660852;iRNA_m5C:9.3199847839287e-10 57635 chr22 21363404 21363404 1 + G T UCEC 21363408 - 21363388 21363428 41 GCAGATCGTGTCCTCCATCACGGCCTCCCTGTGATTCGATG GCAGATCGTGTCCTCCATCACGGCATCCCTGTGATTCGATG < 41bp 0.394620415009062 0.774215650838142 0.8620235 0.9319717 prediction 0.548431301676284 Functional Gain - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363408 chr22:21363404 . . 0 25 hm5C_associated_SNPs_104490 0 0 0 0 0 unknown 0.500231643927323 0.50023164343258 0.1398964 0 hm5C_site_57635 DeepMRMD:0.1398964;iRNA_m5C:0 Brain aging, MRI and cognition phenotypes 57636 chr5 169510020 169510020 1 + T G rs1045176 169510018 + 169509998 169510038 41 AGGCCAATCAGGTCCCAGAGCTTGAATGCTAACAAGCCCAG AGGCCAATCAGGTCCCAGAGCTGGAATGCTAACAAGCCCAG < 41bp 0.469203719991204 0.774215559631211 0.11023304 0.2478509 prediction 0.548431119262422 Functional Gain - DOCK2 ENSG00000134516 UTR3 Human protein_coding chr5:169510018 chr5:169510020 . . 0 23 hm5C_associated_SNPs_104491 0 0 1 0 0 Cytosol 0.500231643787301 0.500231643841952 0 1.09301012685137e-10 hm5C_site_57636 DeepMRMD:0;iRNA_m5C:1.09301012685137e-10 57637 chr12 78400486 78400486 1 + C A UCEC 78400482 + 78400462 78400502 41 AAATCCATGCTTGAGAAATTCAAGCTAGTCAATGCCCGGAC AAATCCATGCTTGAGAAATTCAAGATAGTCAATGCCCGGAC < 41bp 0.391298284402835 0.774207075204357 0.6026032 0.8943724 prediction 0.548414150408714 Functional Gain - NAV3 ENSG00000067798 CDS Human protein_coding chr12:78400482 chr12:78400486 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_104492 0 0 0 0 0 Nucleus 0.500231643921027 0.500231643921156 0.5835384 2.59348098552437e-13 hm5C_site_57637 DeepMRMD:0.5835384;iRNA_m5C:2.59348098552437e-13 57638 chr1 207649582 207649582 1 + T C UCEC 207649580 + 207649560 207649600 41 TTTCTTATTGGTGTCTAAGCCTTCATAGGGTGTCCACCTCC TTTCTTATTGGTGTCTAAGCCTCCATAGGGTGTCCACCTCC < 41bp 0.536832672735737 0.811029463065635 0.83904946 0.9758653 prediction 0.548393580659795 Functional Gain - CR2 ENSG00000117322 CDS Human protein_coding chr1:207649580 chr1:207649582 nonsynonymous SNV 0.782 0 23 hm5C_associated_SNPs_104493 0 0 0 0 1 Endoplasmic reticulum 0.500231643921093 0.500231643921003 0.27363168 0 hm5C_site_57638 DeepMRMD:0.27363168;iRNA_m5C:0 57639 chr4 41259007 41259007 1 + C G BLCA 41259006 + 41258986 41259026 41 CCGCGAAGATGCAGCTCAAGCCGATGGAGATCAACCCCGAG CCGCGAAGATGCAGCTCAAGCGGATGGAGATCAACCCCGAG < 41bp 0.480415396450884 0.774192641683254 0.38833338 0.5526122 prediction 0.548385283366509 Functional Gain - UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41259006 chr4:41259007 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_104494 0 0 1 0 1 Ribosome 0.500231643933834 0.500231643921093 0.1052244 0 hm5C_site_57639 DeepMRMD:0.1052244;iRNA_m5C:0 57640 chr20 57769516 57769516 1 + C G LUSC 57769512 + 57769492 57769532 41 CCTCAGGGTGTGCCCCCAGGCTGGCCAGAGCTGGCCTTGTC CCTCAGGGTGTGCCCCCAGGCTGGGCAGAGCTGGCCTTGTC < 41bp 0.497200760236915 0.774192268695688 0.11352661 0.24246839 prediction 0.548384537391376 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57769512 chr20:57769516 nonsynonymous SNV 0.006 2 25 hm5C_associated_SNPs_104495 0 0 0 0 0 exosome 0.500231643921081 0.500231643929402 0 1.66433533621557e-11 hm5C_site_57640 DeepMRMD:0;iRNA_m5C:1.66433533621557e-11 57641 chr3 50391305 50391305 1 + C G rs193294004 50391304 + 50391284 50391324 41 ACAGTTGGGCATTTGGAGGCCCGTGTGTGAATTCCTGCTCC ACAGTTGGGCATTTGGAGGCCGGTGTGTGAATTCCTGCTCC < 41bp 0.513322284140391 0.787503413534918 0.26147273 0.56990075 prediction 0.548362258789054 Functional Gain - CYB561D2 ENSG00000114395 UTR3 Human protein_coding chr3:50391304 chr3:50391305 . . 0 22 hm5C_associated_SNPs_104496 0 0 1 1 0 Ribosome 0.50023164392067 0.500231643921092 0.1398015 8.44879721739744e-13 hm5C_site_57641 DeepMRMD:0.1398015;iRNA_m5C:8.44879721739744e-13 57642 chr17 19999999 19999999 1 + T G rs146091398 19999997 + 19999977 20000017 41 GCCAAGCCCTGGAACCCAGCCATCAGAGCAGGGGGCCACGG GCCAAGCCCTGGAACCCAGCCAGCAGAGCAGGGGGCCACGG < 41bp 0.592192741016375 0.866371063634033 0.2885847 0.51575124 prediction 0.548356645235316 Functional Gain - SPECC1 ENSG00000128487 CDS Human protein_coding chr17:19999997 chr17:19999999 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_104497 0 0 1 0 1 Cytosol 0.500231643864227 0.500231643921092 0.0315024800000001 1.13731246642601e-10 hm5C_site_57642 DeepMRMD:0.0315024800000001;iRNA_m5C:1.13731246642601e-10 57643 chr22 41913629 41913629 1 + C G BLCA 41913625 + 41913605 41913645 41 AAGAAGTACCTGAGCAAGACCGGCCGGGAAGGTGAGCTGGC AAGAAGTACCTGAGCAAGACCGGCGGGGAAGGTGAGCTGGC < 41bp 0.494340221389429 0.774177872378893 0.8248092 0.89952505 prediction 0.548355744757787 Functional Gain - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41913625 chr22:41913629 nonsynonymous SNV 0.821 4 25 hm5C_associated_SNPs_104498 0 0 1 0 2 chromatin 0.50023164392109 0.500231643927083 0.1494317 1.19848575508286e-11 hm5C_site_57643 DeepMRMD:0.1494317;iRNA_m5C:1.19848575508286e-11 57644 chr1 34330200 34330200 1 + C G rs74067992 34330196 + 34330176 34330216 41 GAAGATGTGGTCAACAGCGACAGACCTGGAGAAGCACCCTT GAAGATGTGGTCAACAGCGACAGAGCTGGAGAAGCACCCTT < 41bp 0.497640870794403 0.774174288513292 0.16671073 0.29782528 prediction 0.548348577026585 Functional Gain - HMGB4 ENSG00000176256 CDS Human protein_coding chr1:34330196 chr1:34330200 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_104499 0 0 0 0 0 unknown 0.500231643921093 0.500231643920719 0 0 hm5C_site_57644 DeepMRMD:0;iRNA_m5C:0 57645 chr11 92715461 92715461 1 + C G LUSC 92715460 + 92715440 92715480 41 CCCATCATTGGTGTGCAGCACCAGGCAGATGCTCTCTAGCC CCCATCATTGGTGTGCAGCACGAGGCAGATGCTCTCTAGCC < 41bp 0.471873493541023 0.774171693165109 0.4674103 0.8196533 prediction 0.548343386330217 Functional Gain - MTNR1B ENSG00000134640 CDS Human protein_coding chr11:92715460 chr11:92715461 nonsynonymous SNV 0.036 1 22 hm5C_associated_SNPs_104500 0 0 0 0 0 unknown 0.500234202342528 0.500237298999059 0.6393066 6.19331306306314e-06 hm5C_site_57645 DeepMRMD:0.6393066;iRNA_m5C:6.19331306306314e-06 57646 chr6 73978198 73978198 1 + C G rs533069448 73978197 + 73978177 73978217 41 ACGGGTTGCCGCTGCTGGCTCCGGAAGCCTGCTTTTATTCT ACGGGTTGCCGCTGCTGGCTCGGGAAGCCTGCTTTTATTCT < 41bp 0.531132286728259 0.805290062164348 0.261415 0.88609636 prediction 0.548315550872177 Functional Gain - KHDC1 ENSG00000229852 ncRNA_exonic Human antisense chr6:73978197 chr6:73978198 . . 0 22 hm5C_associated_SNPs_104501 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.77219272 1.77635683940025e-15 hm5C_site_57646 DeepMRMD:0.77219272;iRNA_m5C:1.77635683940025e-15 57647 chr8 27373877 27373877 1 + T G LUAD 27373874 + 27373854 27373894 41 GGCAGGTTACCGGGTCCTAGCTATGGACATGAAAGGCTATG GGCAGGTTACCGGGTCCTAGCTAGGGACATGAAAGGCTATG < 41bp 0.37911289860751 0.774157221704639 0.06951347 0.6892747 prediction 0.548314443409277 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27373874 chr8:27373877 nonsynonymous SNV 0.886 1 24 hm5C_associated_SNPs_104502 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.3785494 0 hm5C_site_57647 DeepMRMD:0.3785494;iRNA_m5C:0 57648 chr14 20665955 20665955 1 + C A LUAD 20665951 + 20665931 20665971 41 GCTCTACAGAATGCTTTTTCCTGGCAGTTATGGCATTTGAT GCTCTACAGAATGCTTTTTCCTGGAAGTTATGGCATTTGAT < 41bp 0.624906493347654 0.899063284608997 0.27976316 0.34213173 prediction 0.548313582522685 Functional Gain - OR11G2 ENSG00000196832 CDS Human protein_coding chr14:20665951 chr14:20665955 nonsynonymous SNV 0.952 2 25 hm5C_associated_SNPs_104503 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_57648 DeepMRMD:0;iRNA_m5C:0 57649 chr8 104427350 104427350 1 + G C LUSC 104427351 - 104427331 104427371 41 CGTGACGTAGTGTCTGTGCCCCGTTCTTGCCCCCTCAGTAC CGTGACGTAGTGTCTGTGCCCGGTTCTTGCCCCCTCAGTAC < 41bp 0.523300494424847 0.797444529329842 0.13944718 0.36963227 prediction 0.54828806980999 Functional Gain - DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104427351 chr8:104427350 synonymous SNV . 0 22 hm5C_associated_SNPs_104504 0 0 0 0 0 Nucleus 0.500231643921492 0.500231643921092 0 0 hm5C_site_57649 DeepMRMD:0;iRNA_m5C:0 57650 chr2 48807793 48807793 1 + C G UCEC 48807789 + 48807769 48807809 41 AAAGATGTGCTCCACAAATCCAGGCAAATGGGTCACCTTTG AAAGATGTGCTCCACAAATCCAGGGAAATGGGTCACCTTTG < 41bp 0.519007931978669 0.793146712515117 0.74874836 0.8886431 prediction 0.548277561072896 Functional Gain - STON1;STON1-GTF2A1L ENSG00000068781;ENSG00000243244 CDS Human other chr2:48807789 chr2:48807793 synonymous SNV . 0 25 hm5C_associated_SNPs_104505 0 0 1 0 0 unknown 0.500231643238792 0.50023164392109 0.27978948 1.36459465949201e-09 hm5C_site_57650 DeepMRMD:0.27978948;iRNA_m5C:1.36459465949201e-09 57651 chr2 120439269 120439269 1 + C G rs116577552 120439268 + 120439248 120439288 41 ACCCAGCGGGAACATCGTCCCCAGACACTTGTTCCGAATCA ACCCAGCGGGAACATCGTCCCGAGACACTTGTTCCGAATCA < 41bp 0.476494151072881 0.774120031877098 0.06729105 0.33015627 prediction 0.548240063754195 Functional Gain - TMEM177 ENSG00000144120 CDS Human protein_coding chr2:120439268 chr2:120439269 synonymous SNV . 0 22 hm5C_associated_SNPs_104506 0 0 1 0 0 Ribosome 0.500231644175907 0.500231643921106 0 0 hm5C_site_57651 DeepMRMD:0;iRNA_m5C:0 57652 chr3 190120217 190120217 1 + C A BLCA 190120213 + 190120193 190120233 41 GTGATGAGTACGATTCCATACTTGCGGAGCATCCCTGTACG GTGATGAGTACGATTCCATACTTGAGGAGCATCCCTGTACG < 41bp 0.37343724164897 0.774115828825372 0.033955514 0.09480545 prediction 0.548231657650745 Functional Gain - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190120213 chr3:190120217 nonsynonymous SNV 0.034 5 25 hm5C_associated_SNPs_104507 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 1.55431223447522e-15 hm5C_site_57652 DeepMRMD:0;iRNA_m5C:1.55431223447522e-15 57653 chr20 39987094 39987094 1 + C A STAD 39987090 + 39987070 39987110 41 CTCCCACAGGATGTCTTTGCCTACCGGCAGGTGGGCCTGCC CTCCCACAGGATGTCTTTGCCTACAGGCAGGTGGGCCTGCC < 41bp 0.359564461611474 0.774110167705541 0.117412776 0.7841941 prediction 0.548220335411082 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39987090 chr20:39987094 synonymous SNV . 0 25 hm5C_associated_SNPs_104508 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0.5683882 0 hm5C_site_57653 DeepMRMD:0.5683882;iRNA_m5C:0 57654 chr8 21859696 21859696 1 + T A LUAD 21859692 + 21859672 21859712 41 ATACCTCTTCAAGCAGCTGTCACGTAGCACCAAGAAGAGGA ATACCTCTTCAAGCAGCTGTCACGAAGCACCAAGAAGAGGA < 41bp 0.582373865575764 0.856477870403543 0.20555195 0.25148535 prediction 0.548208009655559 Functional Gain - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859692 chr8:21859696 synonymous SNV . 0 25 hm5C_associated_SNPs_104509 0 0 0 0 2 Cytosol 0.500231643921275 0.500231643921114 0 0 hm5C_site_57654 DeepMRMD:0;iRNA_m5C:0 57655 chr17 7340751 7340751 1 + C G rs146078823 7340750 + 7340730 7340770 41 GGGGACCCGGCCCGGGCCCTCCGTGCCGCGGTGGAGGAGGC GGGGACCCGGCCCGGGCCCTCGGTGCCGCGGTGGAGGAGGC < 41bp 0.531559596824628 0.805659148773638 0.099482656 0.25424692 prediction 0.548199103898019 Functional Gain - TMEM102 ENSG00000181284 CDS Human protein_coding chr17:7340750 chr17:7340751 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_104510 0 0 0 0 0 exosome 0.500231644519208 0.500231643921092 0 0 hm5C_site_57655 DeepMRMD:0;iRNA_m5C:0 57656 chr10 111967482 111967482 1 + C A rs560254912 111967478 + 111967458 111967498 41 GCCCCGGCGCCTTCTCTGCTCCAGCCGGCCGGGTCTCCCTG GCCCCGGCGCCTTCTCTGCTCCAGACGGCCGGGTCTCCCTG < 41bp 0.555565760650121 0.829660831927419 0.38326836 0.85427153 prediction 0.548190142554595 Functional Gain - MXI1 ENSG00000119950 UTR5 Human protein_coding chr10:111967478 chr10:111967482 . . 0 25 hm5C_associated_SNPs_104511 0 0 1 0 0 Cytosol 0.500231610812139 0.500231643405871 0.70854306 6.5187464315386e-08 hm5C_site_57656 DeepMRMD:0.70854306;iRNA_m5C:6.5187464315386e-08 57657 chr6 150290418 150290418 1 + C G STAD 150290417 + 150290397 150290437 41 AGGGATGTGACCATGTTCTTCCAGAAGATTTCACTGGGGGA AGGGATGTGACCATGTTCTTCGAGAAGATTTCACTGGGGGA < 41bp 0.5177387526074 0.791824261871717 0.48242232 0.7901205 prediction 0.548171018528635 Functional Gain - ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150290417 chr6:150290418 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_104512 0 0 0 0 1 Nucleus 0.500231581094321 0.50023166961254 0.580241 1.77036439064082e-07 hm5C_site_57657 DeepMRMD:0.580241;iRNA_m5C:1.77036439064082e-07 57658 chr6 46803145 46803145 1 + C A rs536559356 46803141 + 46803121 46803161 41 CTGTCAGCCTGAGCCAGGGGCAGCCCAGCCGACAGAAGCGG CTGTCAGCCTGAGCCAGGGGCAGCACAGCCGACAGAAGCGG < 41bp 0.360172284829934 0.774071849261967 0.10178569 0.08569434 prediction 0.548143698523934 Functional Gain - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46803141 chr6:46803145 nonsynonymous SNV 0.116 2 25 hm5C_associated_SNPs_104513 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921093 0 8.88178419700125e-16 hm5C_site_57658 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 57659 chr11 5968812 5968812 1 + T G SKCM 5968810 + 5968790 5968830 41 CTGCTGGACATCGTGCTCTGCCTCACTGTCATCCCCAAGGT CTGCTGGACATCGTGCTCTGCCGCACTGTCATCCCCAAGGT < 41bp 0.438049389746846 0.774067784969586 0.040087372 0.06891349 prediction 0.548135569939171 Functional Gain - OR56A3 ENSG00000184478 CDS Human protein_coding chr11:5968810 chr11:5968812 nonsynonymous SNV 0.977 4 23 hm5C_associated_SNPs_104514 0 0 0 0 0 unknown 0.500996038242518 0.50024319058706 0 0 hm5C_site_57659 DeepMRMD:0;iRNA_m5C:0 57660 chr19 48343025 48343025 1 + T G HNSC 48343022 + 48343002 48343042 41 GCCCCAGCTAGGGGGCCCGGCTCTTAGCCCCCTCTCTGGCC GCCCCAGCTAGGGGGCCCGGCTCGTAGCCCCCTCTCTGGCC < 41bp 0.384182649819478 0.774066812124184 0.11369741 0.3259204 prediction 0.548133624248368 Functional Gain - CRX ENSG00000105392 CDS Human protein_coding chr19:48343022 chr19:48343025 nonsynonymous SNV 0.624 2 24 hm5C_associated_SNPs_104515 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_57660 DeepMRMD:0;iRNA_m5C:0 57661 chr6 42893229 42893229 1 + C A UCEC 42893225 + 42893205 42893245 41 CCCAGACCCCAGCCTCGGGACCGCCGCTGGGGTGACACCCC CCCAGACCCCAGCCTCGGGACCGCAGCTGGGGTGACACCCC < 41bp 0.38253143365606 0.774058794263155 0.08814877 0.11779317 prediction 0.54811758852631 Functional Gain - PTCRA ENSG00000171611 CDS Human protein_coding chr6:42893225 chr6:42893229 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104516 0 0 0 0 0 exosome 0.500231643921091 0.500231643922439 0 2.69584354839481e-12 hm5C_site_57661 DeepMRMD:0;iRNA_m5C:2.69584354839481e-12 57662 chr2 103121814 103121814 1 + T C UCEC 103121812 + 103121792 103121832 41 TTCATGAAGATGCTGAGCAGCGTCAGCGAGACCTTGATCTT TTCATGAAGATGCTGAGCAGCGCCAGCGAGACCTTGATCTT < 41bp 0.515863813757674 0.789911624027162 0.05591345 0.08224329 prediction 0.548095620538976 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103121812 chr2:103121814 nonsynonymous SNV 0.996 2 23 hm5C_associated_SNPs_104517 0 0 0 0 0 exosome 0.500237224710791 0.500231925650806 0 0 hm5C_site_57662 DeepMRMD:0;iRNA_m5C:0 57663 chr6 97562151 97562151 1 + C G LUAD 97562150 + 97562130 97562170 41 ACTGCCTGTCGCTATGACCCCCGCAGTAATTCCTGGGCAGA ACTGCCTGTCGCTATGACCCCGGCAGTAATTCCTGGGCAGA < 41bp 0.548608462858737 0.822650227566568 0.19629145 0.21593854 prediction 0.548083529415662 Functional Gain - KLHL32 ENSG00000186231 CDS Human protein_coding chr6:97562150 chr6:97562151 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_104518 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_57663 DeepMRMD:0;iRNA_m5C:0 57664 chr11 3418615 3418615 1 + T A rs550947983 3418611 + 3418591 3418631 41 TGAGAAGTGAGGAGCCCCTCCACCTGGCAGCCACCCCGTCT TGAGAAGTGAGGAGCCCCTCCACCAGGCAGCCACCCCGTCT < 41bp 0.490781133444211 0.774040776109443 0.31910253 0.39233837 prediction 0.548081552218887 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3418611 chr11:3418615 . . 0 25 hm5C_associated_SNPs_104519 0 0 1 0 1 unknown 0.500231643925131 0.500231646908956 0 5.96764992977228e-09 hm5C_site_57664 DeepMRMD:0;iRNA_m5C:5.96764992977228e-09 57665 chr8 23222156 23222156 1 + C G rs186297979 23222152 + 23222132 23222172 41 TGAGGCCAGGAGTTTGAGATCAGCCTGGCCAACGTGGGAAA TGAGGCCAGGAGTTTGAGATCAGCGTGGCCAACGTGGGAAA < 41bp 0.502655903687108 0.776688596032466 0.26422882 0.7696781 prediction 0.548065384690717 Functional Gain - LOC100507156 ENSG00000253837 ncRNA_exonic Human processed_transcript chr8:23222152 chr8:23222156 . . 0 25 hm5C_associated_SNPs_104520 0 0 0 0 0 unknown 0.50023164387938 0.500231646604233 0.5393562 5.44970690796731e-09 hm5C_site_57665 DeepMRMD:0.5393562;iRNA_m5C:5.44970690796731e-09 57666 chr19 36357273 36357273 1 + C G UCEC 36357269 + 36357249 36357289 41 ATCTCACCACACCCCACCCTCGAGCTTTCACCAGCTACATC ATCTCACCACACCCCACCCTCGAGGTTTCACCAGCTACATC < 41bp 0.504207883230787 0.778240291266868 0.8290515 0.9179066 prediction 0.548064816072161 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357269 chr19:36357273 nonsynonymous SNV 0.745 3 25 hm5C_associated_SNPs_104521 0 0 0 0 0 exosome 0.500232009366823 0.500231643919465 0.1777102 0 hm5C_site_57666 DeepMRMD:0.1777102;iRNA_m5C:0 57667 chr2 20870653 20870653 1 + C A LUSC 20870649 + 20870629 20870669 41 CGGTGCTAGTCGTCTCCTCCCGCACGCAGAGGAAAGAGAGC CGGTGCTAGTCGTCTCCTCCCGCAAGCAGAGGAAAGAGAGC < 41bp 0.384951688885265 0.774021908637077 0.1699225 0.39789966 prediction 0.548043817274155 Functional Gain - GDF7 ENSG00000143869 CDS Human protein_coding chr2:20870649 chr2:20870653 nonsynonymous SNV 0.956 1 25 hm5C_associated_SNPs_104522 0 0 0 0 0 exosome 0.5002316440114 0.500231643937232 0 0 hm5C_site_57667 DeepMRMD:0;iRNA_m5C:0 57668 chr19 55417989 55417989 1 + T A BLCA 55417985 + 55417965 55418005 41 ATTATGGGGCTGTTGAATACCAGCTGCACTTTGAAGGAAGC ATTATGGGGCTGTTGAATACCAGCAGCACTTTGAAGGAAGC < 41bp 0.535289203462308 0.809293812315697 0.8151336 0.53797585 prediction 0.548009217706778 Functional Gain - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55417985 chr19:55417989 nonsynonymous SNV 0.095 3 25 hm5C_associated_SNPs_104523 0 0 0 0 0 exosome 0.500231643912625 0.500231643882897 0 0 hm5C_site_57668 DeepMRMD:0;iRNA_m5C:0 57669 chr10 5416027 5416027 1 + C G rs201708420 5416026 + 5416006 5416046 41 GCCAGGACACGGCCAAGAGTCCCCACCGCACCAAGTTCACC GCCAGGACACGGCCAAGAGTCGCCACCGCACCAAGTTCACC < 41bp 0.561365679976302 0.835366975490521 0.024563968 0.063669294 prediction 0.548002591028439 Functional Gain - UCN3 ENSG00000178473 CDS Human protein_coding chr10:5416026 chr10:5416027 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_104524 0 0 0 0 0 unknown 0.500231644158648 0.500231643921092 0 0 hm5C_site_57669 DeepMRMD:0;iRNA_m5C:0 57670 chr11 46299309 46299309 1 + C G rs11038846 46299308 + 46299288 46299328 41 GGGAGCACTTAGCTCCCCCGCCCCGGCTCCCACCCTGTCCG GGGAGCACTTAGCTCCCCCGCGCCGGCTCCCACCCTGTCCG < 41bp 0.486340921372064 0.773939580819288 0.27061334 0.36247596 prediction 0.547879161638576 Functional Gain - CREB3L1 ENSG00000157613 UTR5 Human protein_coding chr11:46299308 chr11:46299309 . . 0 22 hm5C_associated_SNPs_104525 0 0 1 0 0 Endoplasmic reticulum 0.50023164312434 0.500231643921092 0 1.59350466155672e-09 hm5C_site_57670 DeepMRMD:0;iRNA_m5C:1.59350466155672e-09 57671 chr6 146136437 146136437 1 + T G rs150448177 146136434 + 146136414 146136454 41 CGGTGCTGTGACCCGTTATCCCCTGTCGGGTTTTACCTCCC CGGTGCTGTGACCCGTTATCCCCGGTCGGGTTTTACCTCCC < 41bp 0.401901637445546 0.773934785860944 0.023245752 0.5379148 prediction 0.547869571721889 Functional Gain - LOC100507557 ENSG00000235652 ncRNA_exonic Human antisense chr6:146136434 chr6:146136437 . . 0 24 hm5C_associated_SNPs_104526 0 0 0 0 0 unknown 0.500231643921077 0.500231643921092 0.0758296000000001 3.13082892944294e-14 hm5C_site_57671 DeepMRMD:0.0758296000000001;iRNA_m5C:3.13082892944294e-14 57672 chr12 120933914 120933914 1 + T A rs550315954 120933910 + 120933890 120933930 41 CGGCGGCGGCTGGCGTGGGGCTGCTTAGATGCGCCACGGTT CGGCGGCGGCTGGCGTGGGGCTGCATAGATGCGCCACGGTT < 41bp 0.519077673333508 0.792966371287583 0.5895274 0.3067134 prediction 0.54777739590815 Functional Gain - DYNLL1 ENSG00000088986 UTR5 Human protein_coding chr12:120933910 chr12:120933914 . . 0 25 hm5C_associated_SNPs_104527 0 0 1 0 0 Ribosome 0.500231643621346 0.500231625634486 0 0 hm5C_site_57672 DeepMRMD:0;iRNA_m5C:0 57673 chr19 42218935 42218935 1 + T G LUAD 42218933 + 42218913 42218953 41 TCCAGCAACAACTCCAAACCCGTGGAGGACAAGGATGCTGT TCCAGCAACAACTCCAAACCCGGGGAGGACAAGGATGCTGT < 41bp 0.591423992360117 0.865304853902534 0.22323662 0.93945646 prediction 0.547761723084834 Functional Gain - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42218933 chr19:42218935 nonsynonymous SNV 0.001 3 23 hm5C_associated_SNPs_104528 0 0 0 0 1 Cytosol 0.500231643540356 0.500231644828792 0.87891292 2.57687182703137e-09 hm5C_site_57673 DeepMRMD:0.87891292;iRNA_m5C:2.57687182703137e-09 57674 chr3 13976496 13976496 1 + C G rs535287146 13976492 + 13976472 13976512 41 GGGAGAGGATGCTGAGGAAGCCAGCGAGGAGGCCCCTGAGA GGGAGAGGATGCTGAGGAAGCCAGGGAGGAGGCCCCTGAGA < 41bp 0.514587648330803 0.788464840736628 0.6650986 0.8734331 prediction 0.547754384811651 Functional Gain - FGD5P1 ENSG00000250439 ncRNA_exonic Human other chr3:13976492 chr3:13976496 . . 0 25 hm5C_associated_SNPs_104529 0 0 0 0 0 unknown 0.500231643166037 0.500231643921092 0.416669 1.5101100370174e-09 hm5C_site_57674 DeepMRMD:0.416669;iRNA_m5C:1.5101100370174e-09 57675 chr17 79885729 79885729 1 + C A rs369622862 79885725 + 79885705 79885745 41 ATGCGCAACCCGCGCGCCGTCGTCCCTGGCAACACTGGCTG ATGCGCAACCCGCGCGCCGTCGTCACTGGCAACACTGGCTG < 41bp 0.418798233282737 0.773872520847168 0.16802242 0.17300785 prediction 0.547745041694335 Functional Gain - MAFG-AS1 ENSG00000265688 ncRNA_exonic Human antisense chr17:79885725 chr17:79885729 . . 0 25 hm5C_associated_SNPs_104530 0 0 0 0 0 unknown 0.500231643961873 0.500042370725508 0 0 hm5C_site_57675 DeepMRMD:0;iRNA_m5C:0 57676 chr12 65720631 65720631 1 + T G COAD 65720628 + 65720608 65720648 41 TCGTGTAGGGATAAAAAGAACTGTAAGGTGGTCTTTTCCCA TCGTGTAGGGATAAAAAGAACTGGAAGGTGGTCTTTTCCCA < 41bp 0.61921648088816 0.893082886877151 0.5501205 0.3401687 prediction 0.547732811977982 Functional Gain - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65720628 chr12:65720631 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_104531 0 0 1 0 1 Nucleus 0.500231643921092 0.500231644098952 0 3.55719675937394e-10 hm5C_site_57676 DeepMRMD:0;iRNA_m5C:3.55719675937394e-10 57677 chr5 38427169 38427169 1 + C A UCEC 38427165 + 38427145 38427185 41 TCTGAGATCTTACGCTGCAACTCCCTGGCCACTGGAGCCCC TCTGAGATCTTACGCTGCAACTCCATGGCCACTGGAGCCCC < 41bp 0.334075145934689 0.773852332758089 0.1258797 0.9694035 prediction 0.547704665516177 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38427165 chr5:38427169 synonymous SNV . 0 25 hm5C_associated_SNPs_104532 0 0 0 0 1 Cytosol 0.500231643921098 0.500231643919078 0.938807 0 hm5C_site_57677 DeepMRMD:0.938807;iRNA_m5C:0 57678 chr6 159029451 159029451 1 + C A PRAD 159029447 + 159029427 159029467 41 TTTCAGTCCATGTTCCTGTGCGCCCTGCTGCTCTTCTGGCT TTTCAGTCCATGTTCCTGTGCGCCATGCTGCTCTTCTGGCT < 41bp 0.348438831646971 0.773849658170753 0.023388118 0.013145 prediction 0.547699316341506 Functional Gain - TMEM181 ENSG00000146433 CDS Human protein_coding chr6:159029447 chr6:159029451 nonsynonymous SNV 0.238 4 25 hm5C_associated_SNPs_104533 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643103723 0 0 hm5C_site_57678 DeepMRMD:0;iRNA_m5C:0 57679 chr2 55096463 55096463 1 + C A UCEC 55096459 + 55096439 55096479 41 GGGCACGATGACGACATTCTCAGCCTGACCATCCATCCAGT GGGCACGATGACGACATTCTCAGCATGACCATCCATCCAGT < 41bp 0.371596112068018 0.773841916403566 0.9025883 0.8488246 prediction 0.547683832807132 Functional Gain - EML6 ENSG00000214595 CDS Human protein_coding chr2:55096459 chr2:55096463 nonsynonymous SNV 0.957 2 25 hm5C_associated_SNPs_104534 0 0 0 0 1 cytosol 0.500231708471842 0.500234092669328 0 4.76839497265402e-06 hm5C_site_57679 DeepMRMD:0;iRNA_m5C:4.76839497265402e-06 57680 chr16 57449110 57449110 1 + T G LUSC 57449108 + 57449088 57449128 41 GACTGCTCCAGGGATGCCATCGTGTAAGTCCCCCTGGCTCC GACTGCTCCAGGGATGCCATCGGGTAAGTCCCCCTGGCTCC < 41bp 0.602277232943713 0.876108546323466 0.6930182 0.9073567 prediction 0.547662626759505 Functional Gain - CCL17 ENSG00000102970 CDS Human protein_coding chr16:57449108 chr16:57449110 nonsynonymous SNV 0.419 4 23 hm5C_associated_SNPs_104535 0 0 0 0 1 exosome 0.500231643921375 0.500231643921094 0.428677 0 hm5C_site_57680 DeepMRMD:0.428677;iRNA_m5C:0 57681 chr1 248112719 248112719 1 + C A LUSC 248112715 + 248112695 248112735 41 ATGTCCCAGCAATGGTGACTCTGGCCTGCATGGACACCTGG ATGTCCCAGCAATGGTGACTCTGGACTGCATGGACACCTGG < 41bp 0.62113910961619 0.894965877054542 0.1409269 0.19509667 prediction 0.547653534876705 Functional Gain - OR2L8 ENSG00000196936 CDS Human other chr1:248112715 chr1:248112719 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_104536 0 0 0 0 0 unknown 0.500231643918274 0.500231643870305 0 0 hm5C_site_57681 DeepMRMD:0;iRNA_m5C:0 57682 chr3 11348463 11348463 1 + T G STAD 11348460 + 11348440 11348480 41 GCTGCCCAGCTATTGGAACACTGTATAACACCAACACACTC GCTGCCCAGCTATTGGAACACTGGATAACACCAACACACTC < 41bp 0.618441053317035 0.89226574309575 0.24474669 0.18623567 prediction 0.547649379557429 Functional Gain - ATG7 ENSG00000197548 CDS Human protein_coding chr3:11348460 chr3:11348463 nonsynonymous SNV 0.258 0 24 hm5C_associated_SNPs_104537 0 0 1 0 2 Cytosol 0.500231708216797 0.500231456922906 0 0 hm5C_site_57682 DeepMRMD:0;iRNA_m5C:0 57683 chr3 44442771 44442771 1 + T A LIHC 44442767 + 44442747 44442787 41 CTCTGTGATCCAGCAAATCTCCAGTGGTTTATTCTCACCAA CTCTGTGATCCAGCAAATCTCCAGAGGTTTATTCTCACCAA < 41bp 0.561910203270385 0.835728855897368 0.57532835 0.91858566 prediction 0.547637305253967 Functional Gain - TCAIM ENSG00000179152 CDS Human protein_coding chr3:44442767 chr3:44442771 nonsynonymous SNV 0.727 1 25 hm5C_associated_SNPs_104538 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921302 0.68651462 4.19442258703384e-13 hm5C_site_57683 DeepMRMD:0.68651462;iRNA_m5C:4.19442258703384e-13 57684 chr7 21940692 21940692 1 + G T SARC 21940696 - 21940676 21940716 41 GGTGGCTTTTGCAAAGATGACCGGCATAGGGCATGCCAGCT GGTGGCTTTTGCAAAGATGACCGGAATAGGGCATGCCAGCT < 41bp 0.594171541155752 0.867981780031466 0.37097365 0.61361176 prediction 0.547620477751428 Functional Gain - DNAH11 ENSG00000105877 CDS Human protein_coding chr7:21940696 chr7:21940692 nonsynonymous SNV 0.250 4 25 hm5C_associated_SNPs_104539 0 0 1 2 0 nucleolus 0.500231647187711 0.500231643936097 0.22722352 0 hm5C_site_57684 DeepMRMD:0.22722352;iRNA_m5C:0 57685 chr1 1269429 1269429 1 + C A LUSC 1269425 + 1269405 1269445 41 TGGTGACGGACTGGCACATGCTGCCCACGGAGGCGCTGGTG TGGTGACGGACTGGCACATGCTGCACACGGAGGCGCTGGTG < 41bp 0.630797156896906 0.904605990115777 0.060733676 0.16607508 prediction 0.547617666437742 Functional Gain - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1269425 chr1:1269429 nonsynonymous SNV 0.140 4 25 hm5C_associated_SNPs_104540 0 0 0 0 0 chromatin 0.500231643953442 0.500231783086825 0 2.78266765407764e-07 hm5C_site_57685 DeepMRMD:0;iRNA_m5C:2.78266765407764e-07 57686 chr1 196883752 196883752 1 + T A CESC 196883748 + 196883728 196883768 41 AATCAGTTATGGAAACACCACAGGTTCCATAGTGTGTGGTG AATCAGTTATGGAAACACCACAGGATCCATAGTGTGTGGTG < 41bp 0.535747635018718 0.809544763470191 0.3780121 0.5251285 prediction 0.547594256902945 Functional Gain - CFHR4 ENSG00000134365 CDS Human protein_coding chr1:196883748 chr1:196883752 synonymous SNV . 0 25 hm5C_associated_SNPs_104541 0 0 0 0 1 cytosol 0.500231643902171 0.500231643921091 0.050257 3.7840397482114e-11 hm5C_site_57686 DeepMRMD:0.050257;iRNA_m5C:3.7840397482114e-11 57687 chr17 32964910 32964910 1 + C G LUAD 32964906 + 32964886 32964926 41 GCAGGCAACCCGCTGGAAACCGTGCCCGCCTTCTGCCACGG GCAGGCAACCCGCTGGAAACCGTGGCCGCCTTCTGCCACGG < 41bp 0.495470238884547 0.773796631526952 0.24944541 0.794 prediction 0.547593263053905 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32964906 chr17:32964910 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_104542 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0.588 0 hm5C_site_57687 DeepMRMD:0.588;iRNA_m5C:0 57688 chr1 192548282 192548282 1 + C G HNSC 192548281 + 192548261 192548301 41 TTTTAGATCAATATTGACTTCCGCACTCGAGAATCTACAGC TTTTAGATCAATATTGACTTCGGCACTCGAGAATCTACAGC < 41bp 0.488944132611619 0.773790518532651 0.022718012 0.03856972 prediction 0.547581037065302 Functional Gain - RGS1 ENSG00000090104 CDS Human protein_coding chr1:192548281 chr1:192548282 nonsynonymous SNV 0.843 0 22 hm5C_associated_SNPs_104543 0 0 0 0 1 exosome 0.500234776065386 0.500232356575035 0 0 hm5C_site_57688 DeepMRMD:0;iRNA_m5C:0 57689 chr16 3198392 3198392 1 + C G rs73492472 3198391 + 3198371 3198411 41 CATCCTGACGGTCTACTCAGCCGCAGAGGGTAAGGAGATGG CATCCTGACGGTCTACTCAGCGGCAGAGGGTAAGGAGATGG < 41bp 0.553536722419483 0.827322842119588 0.19062322 0.35427672 prediction 0.54757223940021 Functional Gain - CASP16P ENSG00000228146 CDS Human transcribed_unprocessed_pseudogene chr16:3198391 chr16:3198392 synonymous SNV . 0 22 hm5C_associated_SNPs_104544 0 0 0 0 1 unknown 0.50023145567405 0.500231643921092 0 3.76494085685408e-07 hm5C_site_57689 DeepMRMD:0;iRNA_m5C:3.76494085685408e-07 57690 chr2 136537941 136537941 1 + C A rs2304602 136537937 + 136537917 136537957 41 ACCCCCAAACCCTGCATCATCTAGCAAATCAGAAAAAAGGT ACCCCCAAACCCTGCATCATCTAGAAAATCAGAAAAAAGGT < 41bp 0.362849659772213 0.773772499220542 0.07424909 0.07030055 prediction 0.547544998441083 Functional Gain - UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136537937 chr2:136537941 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104545 0 0 0 0 1 Endoplasmic reticulum 0.500231643921101 0.500231643928961 0 1.57216462071119e-11 hm5C_site_57690 DeepMRMD:0;iRNA_m5C:1.57216462071119e-11 57691 chr11 607560 607560 1 + C A rs202208436 607556 + 607536 607576 41 CGGGATGCGGCCCCGGCCCACGGGCAGAGCATTGAGATCCC CGGGATGCGGCCCCGGCCCACGGGAAGAGCATTGAGATCCC < 41bp 0.632197597337922 0.905952517673521 0.58334136 0.8731667 prediction 0.5475098406712 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:607556 chr11:607560 nonsynonymous SNV 0.003 2 25 hm5C_associated_SNPs_104546 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0.57965068 0 hm5C_site_57691 DeepMRMD:0.57965068;iRNA_m5C:0 57692 chr4 119553857 119553857 1 + C A rs574849654 119553853 + 119553833 119553873 41 CCTCCAAGTGCTGTGTAGGCCAAGCTAATGCCTCACAGCAC CCTCCAAGTGCTGTGTAGGCCAAGATAATGCCTCACAGCAC < 41bp 0.593622321271853 0.867374829283918 0.36365062 0.34636825 prediction 0.547505016024131 Functional Gain - LOC729218 ENSG00000225892;ENSG00000260404 ncRNA_exonic Human other chr4:119553853 chr4:119553857 . . 0 25 hm5C_associated_SNPs_104547 0 0 0 0 0 unknown 0.50023368915578 0.500231965658601 0 0 hm5C_site_57692 DeepMRMD:0;iRNA_m5C:0 57693 chr4 69973966 69973966 1 + T A LAML 69973962 + 69973942 69973982 41 TCACATGAAGGCCAGGGGAGCAGCTGTTAGAGTGGACTTCA TCACATGAAGGCCAGGGGAGCAGCAGTTAGAGTGGACTTCA < 41bp 0.555301057867999 0.829042044714831 0.9012422 0.45474592 prediction 0.547481973693664 Functional Gain - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69973962 chr4:69973966 synonymous SNV . 0 25 hm5C_associated_SNPs_104548 0 0 1 0 1 Endoplasmic reticulum 0.500231643921089 0.500231643920892 0 0 hm5C_site_57693 DeepMRMD:0;iRNA_m5C:0 57694 chr15 69652466 69652466 1 + C G BRCA 69652465 + 69652445 69652485 41 TGTTTAGCATAGACCAGATACCCCAGGTATGTGCTCTATTG TGTTTAGCATAGACCAGATACGCCAGGTATGTGCTCTATTG < 41bp 0.482141154849135 0.773738599743705 0.085974514 0.43775916 prediction 0.547477199487409 Functional Gain - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652465 chr15:69652466 nonsynonymous SNV 0.069 4 22 hm5C_associated_SNPs_104549 0 0 0 0 1 Cytosol 0.500231643921093 0.500230887910052 0 0 hm5C_site_57694 DeepMRMD:0;iRNA_m5C:0 57695 chr11 124857980 124857980 1 + C G LUAD 124857979 + 124857959 124857999 41 CTGCATGTTCTCTCCAACGACCAGAATATTCTACCCAAATG CTGCATGTTCTCTCCAACGACGAGAATATTCTACCCAAATG < 41bp 0.486342597139485 0.773711265499944 0.20371455 0.6450983 prediction 0.547422530999888 Functional Gain - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124857979 chr11:124857980 nonsynonymous SNV 0.052 1 22 hm5C_associated_SNPs_104550 0 0 1 0 1 chromatin 0.500810274898791 0.500227450955471 0.2901966 0 hm5C_site_57695 DeepMRMD:0.2901966;iRNA_m5C:0 57696 chr2 219267126 219267126 1 + C G HNSC 219267125 + 219267105 219267145 41 GAGATTGATGGGGTGGTCCACCAGGTGAGGGCCAGGAAGAG GAGATTGATGGGGTGGTCCACGAGGTGAGGGCCAGGAAGAG < 41bp 0.46499936975612 0.773709388123712 0.7720356 0.78699505 prediction 0.547418776247423 Functional Gain - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219267125 chr2:219267126 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_104551 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643995432 0.0299189 1.48679291100962e-10 hm5C_site_57696 DeepMRMD:0.0299189;iRNA_m5C:1.48679291100962e-10 57697 chr10 48370745 48370745 1 + T G COAD 48370742 + 48370722 48370762 41 AGGGCGGGCCGGGATGTGGGCAGTGCGGAGCTGGCACTGTT AGGGCGGGCCGGGATGTGGGCAGGGCGGAGCTGGCACTGTT < 41bp 0.632308215422915 0.906013127198216 0.48786443 0.88174665 prediction 0.547409823550602 Functional Gain - ZNF488 ENSG00000165388 CDS Human other chr10:48370742 chr10:48370745 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_104552 0 0 0 0 0 exosome 0.500231643921109 0.500231643921194 0.7634933 1.69642078162724e-13 hm5C_site_57697 DeepMRMD:0.7634933;iRNA_m5C:1.69642078162724e-13 57698 chr9 125281593 125281593 1 + C A SKCM 125281589 + 125281569 125281609 41 GCTGGACTCTCACCTTCACACCCCCATGTTCTTCTTCCTCA GCTGGACTCTCACCTTCACACCCCAATGTTCTTCTTCCTCA < 41bp 0.375487231067221 0.773691810682641 0.010171205 0.011551827 prediction 0.547383621365282 Functional Gain - OR1J4 ENSG00000239590 CDS Human protein_coding chr9:125281589 chr9:125281593 synonymous SNV . 0 25 hm5C_associated_SNPs_104553 0 0 0 0 0 exosome 0.500230873201689 0.500231643921089 0 1.54143879971258e-06 hm5C_site_57698 DeepMRMD:0;iRNA_m5C:1.54143879971258e-06 57699 chr21 38884593 38884593 1 + C A SKCM 38884589 + 38884569 38884609 41 GCAATCAGGCCTACCAGAATCGCCCAGTGGCTGCTAATACC GCAATCAGGCCTACCAGAATCGCCAAGTGGCTGCTAATACC < 41bp 0.366410110590224 0.773691444505896 0.099669576 0.91170216 prediction 0.547382889011793 Functional Gain - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38884589 chr21:38884593 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104554 0 0 1 0 0 Cytosol 0.500231643759563 0.50023164847096 0.82340432 9.42279476667807e-09 hm5C_site_57699 DeepMRMD:0.82340432;iRNA_m5C:9.42279476667807e-09 57700 chr1 150471056 150471056 1 + C G rs116476409 150471055 + 150471035 150471075 41 CTTTGGGGCTCTACACCGGGCCGAAGCCTCTGGTGGTCTGG CTTTGGGGCTCTACACCGGGCGGAAGCCTCTGGTGGTCTGG < 41bp 0.464118462131698 0.773678717113681 0.25827497 0.5480741 prediction 0.547357434227361 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150471055 chr1:150471056 synonymous SNV . 0 22 hm5C_associated_SNPs_104555 0 0 1 0 2 Ribosome 0.500231643921093 0.500231643921093 0.0961482 4.44089209850063e-16 hm5C_site_57700 DeepMRMD:0.0961482;iRNA_m5C:4.44089209850063e-16 57701 chr1 43665119 43665119 1 + T A LAML 43665115 + 43665095 43665135 41 CAGTCAATGGAAATGTGATTCACGTTTACACCACCACGAGC CAGTCAATGGAAATGTGATTCACGATTACACCACCACGAGC < 41bp 0.576274012637307 0.849914639651736 0.2305434 0.20935744 prediction 0.547281254028859 Functional Gain - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43665115 chr1:43665119 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_104556 0 0 0 0 1 exosome 0.500232258877863 0.500231741580255 0 0 hm5C_site_57701 DeepMRMD:0;iRNA_m5C:0 57702 chr3 44945443 44945443 1 + C A rs113204640 44945439 + 44945419 44945459 41 CTGCCCAAGGGCTACGACGGCTGGCAGGCTGTGGACGCAAC CTGCCCAAGGGCTACGACGGCTGGAAGGCTGTGGACGCAAC < 41bp 0.633625950842446 0.907252958819005 0.08830103 0.24108747 prediction 0.547254015953119 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44945439 chr3:44945443 nonsynonymous SNV 0.332 4 25 hm5C_associated_SNPs_104557 0 0 0 0 1 exosome 0.500231643921208 0.500231643921568 0 7.19424519957101e-13 hm5C_site_57702 DeepMRMD:0;iRNA_m5C:7.19424519957101e-13 57703 chr11 123893789 123893789 1 + C A LUSC 123893785 + 123893765 123893805 41 CCCCATGCCCCAGGGCTGGACGCCCCACTCTTTGGAATCTT CCCCATGCCCCAGGGCTGGACGCCACACTCTTTGGAATCTT < 41bp 0.386526938961784 0.77362603775799 0.15232903 0.41339803 prediction 0.54725207551598 Functional Gain - OR10G9 ENSG00000236981 CDS Human protein_coding chr11:123893785 chr11:123893789 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_104558 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_57703 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 57704 chr1 248512734 248512734 1 + T A LUSC 248512730 + 248512710 248512750 41 ATCATCAGGTCTTACATTCACATCTTTTCGACCGTGCTCGG ATCATCAGGTCTTACATTCACATCATTTCGACCGTGCTCGG < 41bp 0.470392438265967 0.773622876718932 0.111466914 0.15274075 prediction 0.547245753437863 Functional Gain - OR14C36 ENSG00000177174 CDS Human protein_coding chr1:248512730 chr1:248512734 nonsynonymous SNV 0.241 2 25 hm5C_associated_SNPs_104559 0 0 0 0 0 unknown 0.500231643915503 0.500231643886856 0 0 hm5C_site_57704 DeepMRMD:0;iRNA_m5C:0 57705 chr19 43867182 43867182 1 + T A rs117053000 43867178 + 43867158 43867198 41 CCCAGGATGGACGCTAGAGTCGACTGCTCCTAGGCTACAAG CCCAGGATGGACGCTAGAGTCGACAGCTCCTAGGCTACAAG < 41bp 0.55362972310156 0.827239400760706 0.20358834 0.28407022 prediction 0.547219355318292 Functional Gain - CD177 ENSG00000272396 ncRNA_intronic Human antisense chr19:43867178 chr19:43867182 . . 0 25 hm5C_associated_SNPs_104560 0 0 0 0 0 exosome 0.500231643921093 0.500231643921139 0 9.32587340685131e-14 hm5C_site_57705 DeepMRMD:0;iRNA_m5C:9.32587340685131e-14 57706 chr2 121744000 121744000 1 + C A STAD 121743996 + 121743976 121744016 41 CCTGACGGCACTGGATGACACACCCCCAGGGGCCGACACCT CCTGACGGCACTGGATGACACACCACCAGGGGCCGACACCT < 41bp 0.374096918405713 0.773607697756648 0.034701467 0.03995955 prediction 0.547215395513296 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121743996 chr2:121744000 synonymous SNV . 0 25 hm5C_associated_SNPs_104561 0 0 0 0 0 Endoplasmic reticulum 0.500231643921093 0.50023164175291 0 0 hm5C_site_57706 DeepMRMD:0;iRNA_m5C:0 57707 chr2 114356340 114356340 1 + C G BLCA 114356339 + 114356319 114356359 41 GGGCTCCATGACACCTTCCCCCCCAGACCCAGACTTGGGCC GGGCTCCATGACACCTTCCCCGCCAGACCCAGACTTGGGCC < 41bp 0.491985824141042 0.77360681489511 0.043200165 0.748714 prediction 0.547213629790219 Functional Gain - WASH2P ENSG00000146556 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:114356339 chr2:114356340 . . 0 22 hm5C_associated_SNPs_104562 0 0 0 0 0 unknown 0.500231644031842 0.500231641149002 0.497428 0 hm5C_site_57707 DeepMRMD:0.497428;iRNA_m5C:0 57708 chr1 247587724 247587724 1 + C G OV 247587720 + 247587700 247587740 41 TGCACTGACTGGCAGAAGGCCGAGCGGGGAGACATTCTCCT TGCACTGACTGGCAGAAGGCCGAGGGGGGAGACATTCTCCT < 41bp 0.475728128838292 0.773605860237527 0.8200632 0.9153341 prediction 0.547211720475053 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247587720 chr1:247587724 nonsynonymous SNV 0.861 1 25 hm5C_associated_SNPs_104563 0 0 0 0 0 Nucleus 0.500231661308198 0.500231643921092 0.1905418 0 hm5C_site_57708 DeepMRMD:0.1905418;iRNA_m5C:0 57709 chr16 3208988 3208988 1 + C A rs372301322 3208984 + 3208964 3209004 41 GAGGTCCCGGGTTCAAATCCCGGACGAGCCCGCTTTTTTTT GAGGTCCCGGGTTCAAATCCCGGAAGAGCCCGCTTTTTTTT < 41bp 0.423134594414572 0.773603393987153 0.6166431 0.772078 prediction 0.547206787974306 Functional Gain - CASP16P;OR1F1 ENSG00000261889;ENSG00000262521 intergenic Human other chr16:3208984 chr16:3208988 . . 0 25 hm5C_associated_SNPs_104564 0 0 1 0 0 unknown 0.500231643922701 0.500231643921188 0.3108698 0 hm5C_site_57709 DeepMRMD:0.3108698;iRNA_m5C:0 57710 chr1 207648374 207648374 1 + T A LUSC 207648370 + 207648350 207648390 41 CCCACAGTGCTTACGATCTCCTCCTGTGACTCGCTGCCCTA CCCACAGTGCTTACGATCTCCTCCAGTGACTCGCTGCCCTA < 41bp 0.591895990276327 0.865485481173061 0.12348032 0.96257144 prediction 0.547178981793467 Functional Gain - CR2 ENSG00000117322 CDS Human protein_coding chr1:207648370 chr1:207648374 synonymous SNV . 0 25 hm5C_associated_SNPs_104565 0 0 0 0 0 Endoplasmic reticulum 0.500231643908061 0.500231640166931 0.92514288 0 hm5C_site_57710 DeepMRMD:0.92514288;iRNA_m5C:0 57711 chr20 42972068 42972068 1 + T G UCEC 42972066 + 42972046 42972086 41 CCTGGTCTGAGGAGAAGTGGCATTACTTGTTTCCGGCCCCA CCTGGTCTGAGGAGAAGTGGCAGTACTTGTTTCCGGCCCCA < 41bp 0.424915265056976 0.773583409324826 0.30263248 0.5759919 prediction 0.547166818649652 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42972066 chr20:42972068 nonsynonymous SNV 0.033 2 23 hm5C_associated_SNPs_104566 0 0 0 0 2 cytosol 0.50023164392125 0.500231643921119 0.1519838 0 hm5C_site_57711 DeepMRMD:0.1519838;iRNA_m5C:0 57712 chr19 1468987 1468987 1 + C A COAD 1468983 + 1468963 1469003 41 GAAAGCGCCCCCCGGTCACCCAGGCTGCTGGGGCCCTGCCC GAAAGCGCCCCCCGGTCACCCAGGATGCTGGGGCCCTGCCC < 41bp 0.604365664550704 0.877946837320878 0.8994656 0.91941774 prediction 0.547162345540347 Functional Gain - APC2 ENSG00000115266 CDS Human protein_coding chr19:1468983 chr19:1468987 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_104567 0 0 0 0 0 nucleolus 0.500231643921092 0.500231643921092 0.03990428 0 hm5C_site_57712 DeepMRMD:0.03990428;iRNA_m5C:0 57713 chr10 88780132 88780132 1 + C G rs10219136 88780131 + 88780111 88780151 41 CGAAGGCCTGGCCCACCGCACCGAGAAGGCCACCGAGGGAG CGAAGGCCTGGCCCACCGCACGGAGAAGGCCACCGAGGGAG < 41bp 0.462285519189839 0.773568865311314 0.34530103 0.866257 prediction 0.547137730622628 Functional Gain - FAM25A ENSG00000188100 CDS Human protein_coding chr10:88780131 chr10:88780132 synonymous SNV . 0 22 hm5C_associated_SNPs_104568 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.732514 0 hm5C_site_57713 DeepMRMD:0.732514;iRNA_m5C:0 57714 chr18 72187612 72187612 1 + C G rs890336 72187608 + 72187588 72187628 41 CTGCGGAAAGTTCTGGTTGTCGGCCGGGCACCACGGCTCAC CTGCGGAAAGTTCTGGTTGTCGGCGGGGCACCACGGCTCAC < 41bp 0.526254705500152 0.799811634054119 0.51864743 0.93641555 prediction 0.547113857107933 Functional Gain - CNDP2 ENSG00000133313 UTR3 Human protein_coding chr18:72187608 chr18:72187612 . . 0 25 hm5C_associated_SNPs_104569 0 0 1 0 0 Ribosome 0.500231643921092 0.500231644490263 0.83553624 1.13834275339286e-09 hm5C_site_57714 DeepMRMD:0.83553624;iRNA_m5C:1.13834275339286e-09 57715 chr1 200008677 200008677 1 + C G rs551220303 200008676 + 200008656 200008696 41 AGAGGTCCTGCCCGGCAGCCCCGAGGAGGCGGAGGCACGCT AGAGGTCCTGCCCGGCAGCCCGGAGGAGGCGGAGGCACGCT < 41bp 0.48134820838013 0.773556690203992 0.53622895 0.8981226 prediction 0.547113380407985 Functional Gain - NR5A2 ENSG00000116833 intronic Human protein_coding chr1:200008676 chr1:200008677 . . 0 22 hm5C_associated_SNPs_104570 0 0 0 0 0 cytosol 0.500231643921131 0.500231644621042 0.7237873 1.39982203606337e-09 hm5C_site_57715 DeepMRMD:0.7237873;iRNA_m5C:1.39982203606337e-09 57716 chr15 101549251 101549251 1 + C G rs184008590 101549247 + 101549227 101549267 41 GCTGCCTGGCGTGCAGTCATCGGACGAAATCATCTGTTCCA GCTGCCTGGCGTGCAGTCATCGGAGGAAATCATCTGTTCCA < 41bp 0.487365781007487 0.773544400752102 0.9239582 0.9496617 prediction 0.547088801504204 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101549247 chr15:101549251 nonsynonymous SNV 0.363 1 25 hm5C_associated_SNPs_104571 0 0 0 0 1 Nucleus 0.500231610025765 0.500231643378657 0.0514070000000002 6.67057837855367e-08 hm5C_site_57716 DeepMRMD:0.0514070000000002;iRNA_m5C:6.67057837855367e-08 57717 chr12 56388173 56388173 1 + C G rs147229892 56388172 + 56388152 56388192 41 TTCCCCAGGCTTCTCCCTCCCCCCACCCCCATAGGAACAGG TTCCCCAGGCTTCTCCCTCCCGCCACCCCCATAGGAACAGG < 41bp 0.486723812782098 0.773533498880042 0.07354951 0.080441594 prediction 0.547066997760084 Functional Gain - RAB5B ENSG00000255990 ncRNA_exonic Human other chr12:56388172 chr12:56388173 . . 0 22 hm5C_associated_SNPs_104572 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_57717 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 57718 chr19 36640548 36640548 1 + C G SKCM 36640547 + 36640527 36640567 41 AACATCCAGGAGGTAAGGACCCCCATATTGGGGTATGGGTG AACATCCAGGAGGTAAGGACCGCCATATTGGGGTATGGGTG < 41bp 0.472071015438519 0.773533373886026 0.6031412 0.93581027 prediction 0.547066747772053 Functional Gain - CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36640547 chr19:36640548 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_104573 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.66533814 0 hm5C_site_57718 DeepMRMD:0.66533814;iRNA_m5C:0 57719 chr7 141443442 141443442 1 + T G OV 141443439 + 141443419 141443459 41 GGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTA GGAAGGAAAAAATCCAGTCACAAGATTTTCTCTAGCAACTA < 41bp 0.623566466039372 0.897098790320407 0.37272054 0.67258346 prediction 0.547064648562069 Functional Gain - SSBP1 ENSG00000106028 CDS Human protein_coding chr7:141443439 chr7:141443442 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_104574 0 0 1 0 2 Ribosome 0.500231643914282 0.500231642513076 0.34516692 0 hm5C_site_57719 DeepMRMD:0.34516692;iRNA_m5C:0 57720 chr7 2740257 2740257 1 + C G UVM 2740253 + 2740233 2740273 41 CCGCAGAGGACGCTCTTCTGCACCCTGCTCATCCGCACGGG CCGCAGAGGACGCTCTTCTGCACCGTGCTCATCCGCACGGG < 41bp 0.532467161041006 0.805950177068243 0.05362743 0.06884393 prediction 0.546966032054474 Functional Gain - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2740253 chr7:2740257 nonsynonymous SNV 0.549 1 25 hm5C_associated_SNPs_104575 0 0 0 0 0 nucleus 0.500231643919609 0.50023163464893 0 0 hm5C_site_57720 DeepMRMD:0;iRNA_m5C:0 57721 chr1 23853430 23853430 1 + T G rs554133265 23853427 + 23853407 23853447 41 ATTCTGCACTCCCAGGGTCCCAATGCGGCAAGTGTCCCCCT ATTCTGCACTCCCAGGGTCCCAAGGCGGCAAGTGTCCCCCT < 41bp 0.422069628544956 0.773481589653001 0.28502947 0.8598833 prediction 0.546963179306001 Functional Gain - LOC101928163 ENSG00000007968 intronic Human protein_coding chr1:23853427 chr1:23853430 . . 0 24 hm5C_associated_SNPs_104576 0 0 0 0 0 unknown 0.500231645831242 0.500231643921095 0.7197666 0 hm5C_site_57721 DeepMRMD:0.7197666;iRNA_m5C:0 57722 chr11 124120484 124120484 1 + C G rs545481117 124120483 + 124120463 124120503 41 TGGCTGGGCTCTCAGAACAGCCAGAGCTCCAGCTGCCCCTC TGGCTGGGCTCTCAGAACAGCGAGAGCTCCAGCTGCCCCTC < 41bp 0.518514898038626 0.791996288693922 0.90989697 0.9046052 prediction 0.546962781310593 Functional Gain - OR8G1 ENSG00000197849 CDS Human protein_coding chr11:124120483 chr11:124120484 nonsynonymous SNV 0.064 0 22 hm5C_associated_SNPs_104577 0 0 0 0 0 unknown 0.500231643857833 0.500231643043846 0 0 hm5C_site_57722 DeepMRMD:0;iRNA_m5C:0 57723 chr2 121747509 121747509 1 + T A COAD 121747505 + 121747485 121747525 41 TGAGCCAGGAGGGCTACCACCAGGTCCCCAGCCTTCTGCCT TGAGCCAGGAGGGCTACCACCAGGACCCCAGCCTTCTGCCT < 41bp 0.484771684520844 0.773474993317088 0.9391476 0.928262 prediction 0.546949986634176 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121747505 chr2:121747509 nonsynonymous SNV 0.913 0 25 hm5C_associated_SNPs_104578 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_57723 DeepMRMD:0;iRNA_m5C:0 57724 chr18 32682068 32682068 1 + T A rs111906099 32682064 + 32682044 32682084 41 TGCAATTCCTCCTCCTGACCCTGGTGAACAGATCTTCAACC TGCAATTCCTCCTCCTGACCCTGGAGAACAGATCTTCAACC < 41bp 0.578689400152314 0.852156460343285 0.185204 0.13826731 prediction 0.546934120381943 Functional Gain - MAPRE2 ENSG00000166974 CDS Human protein_coding chr18:32682064 chr18:32682068 synonymous SNV . 0 25 hm5C_associated_SNPs_104579 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57724 DeepMRMD:0;iRNA_m5C:0 57725 chr18 2885101 2885101 1 + C A LUSC 2885097 + 2885077 2885117 41 CCCGTGAAGACCCTCCGCCCCACGCCGGCTCGGCCTCGAAA CCCGTGAAGACCCTCCGCCCCACGACGGCTCGGCCTCGAAA < 41bp 0.352797313326442 0.7734667968459 0.020757645 0.023011476 prediction 0.546933593691799 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2885097 chr18:2885101 nonsynonymous SNV 0.026 0 25 hm5C_associated_SNPs_104580 0 0 0 0 1 Ribosome 0.500231643610928 0.500231637760106 0 0 hm5C_site_57725 DeepMRMD:0;iRNA_m5C:0 57726 chr3 183852828 183852828 1 + C A rs182073310 183852824 + 183852804 183852844 41 ATTACAGATTCCCGATGGAGCTGGCCCCTTCGTGGCGACCA ATTACAGATTCCCGATGGAGCTGGACCCTTCGTGGCGACCA < 41bp 0.593461685706996 0.866921233399214 0.13114902 0.25136405 prediction 0.546919095384436 Functional Gain - EIF2B5 ENSG00000272721 ncRNA_intronic Human antisense chr3:183852824 chr3:183852828 . . 0 25 hm5C_associated_SNPs_104581 0 0 0 0 0 Ribosome 0.500231644505961 0.500231644235865 0 0 hm5C_site_57726 DeepMRMD:0;iRNA_m5C:0 57727 chr12 120901496 120901496 1 + T G rs187091912 120901494 + 120901474 120901514 41 TCTCTCCAGGTTACAAATACCATGACCAAACTGTGTAATGT TCTCTCCAGGTTACAAATACCAGGACCAAACTGTGTAATGT < 41bp 0.464540237019356 0.773458343894641 0.031266212 0.35718772 prediction 0.546916687789283 Functional Gain - GATC ENSG00000111786 intronic Human protein_coding chr12:120901494 chr12:120901496 . . 0 23 hm5C_associated_SNPs_104582 0 0 1 0 0 Ribosome 0.500231643953217 0.500231647083945 0 6.26145668647382e-09 hm5C_site_57727 DeepMRMD:0;iRNA_m5C:6.26145668647382e-09 57728 chr6 26199903 26199903 1 + C G rs34961555 26199902 + 26199882 26199922 41 TAGCCGCAAGGAGAGCTATTCCGTGTACGTGTACAAGGTGC TAGCCGCAAGGAGAGCTATTCGGTGTACGTGTACAAGGTGC < 41bp 0.476846092443925 0.77345413227302 0.53562564 0.87626815 prediction 0.546908264546039 Functional Gain - HIST1H2BF ENSG00000197846 CDS Human other chr6:26199902 chr6:26199903 synonymous SNV . 0 22 hm5C_associated_SNPs_104583 0 1 1 0 0 exosome 0.500231643911176 0.500231643916422 0.68128502 1.04920516719176e-11 hm5C_site_57728 DeepMRMD:0.68128502;iRNA_m5C:1.04920516719176e-11 57729 chr14 20216220 20216220 1 + T A BLCA 20216216 + 20216196 20216236 41 AGTGGTCTGCTGTCTCTTGTCTGCTTCTTGGTCTTACTATT AGTGGTCTGCTGTCTCTTGTCTGCATCTTGGTCTTACTATT < 41bp 0.554684850092533 0.82810385233714 0.21824631 0.16438979 prediction 0.546838004489214 Functional Gain - OR4Q3 ENSG00000182652 CDS Human protein_coding chr14:20216216 chr14:20216220 nonsynonymous SNV 0.723 3 25 hm5C_associated_SNPs_104584 0 0 0 0 0 unknown 0.500231643955786 0.500231646171317 0 4.4310626279298e-09 hm5C_site_57729 DeepMRMD:0;iRNA_m5C:4.4310626279298e-09 57730 chr11 109294892 109294892 1 + C A HNSC 109294888 + 109294868 109294908 41 CCTCCAGTCCCCAAGGAGCACACGCAGCTTCCTCCTGTTTG CCTCCAGTCCCCAAGGAGCACACGAAGCTTCCTCCTGTTTG < 41bp 0.630195236127688 0.903607343028959 0.038966924 0.18240336 prediction 0.546824213802542 Functional Gain - C11orf87 ENSG00000185742 CDS Human protein_coding chr11:109294888 chr11:109294892 nonsynonymous SNV 0.988 0 25 hm5C_associated_SNPs_104585 0 0 0 0 0 exosome 0.500231643921087 0.500231643921092 0 1.08801856413265e-14 hm5C_site_57730 DeepMRMD:0;iRNA_m5C:1.08801856413265e-14 57731 chr6 73979082 73979082 1 + C G rs572907806 73979081 + 73979061 73979101 41 GAAGGGCTCCTCAAGTGCCGCCAAAGTGGGAGCCCAGGCAG GAAGGGCTCCTCAAGTGCCGCGAAAGTGGGAGCCCAGGCAG < 41bp 0.527886049083713 0.801295957851279 0.62154114 0.7578083 prediction 0.546819817535133 Functional Gain - KHDC1 ENSG00000229852 ncRNA_exonic Human antisense chr6:73979081 chr6:73979082 . . 0 22 hm5C_associated_SNPs_104586 0 0 0 0 0 Cytosol 0.500231624622888 0.500231643925461 0.27253432 3.86051457468284e-08 hm5C_site_57731 DeepMRMD:0.27253432;iRNA_m5C:3.86051457468284e-08 57732 chrX 105450493 105450493 1 + C A UCEC 105450489 + 105450469 105450509 41 TGAGGAAGAAGGTCAAGCCTCTGACAAGTCATTGCTTCCAA TGAGGAAGAAGGTCAAGCCTCTGAAAAGTCATTGCTTCCAA < 41bp 0.367551714776393 0.77340731947009 0.013983369 0.036592454 prediction 0.54681463894018 Functional Gain - MUM1L1 ENSG00000157502 CDS Human protein_coding chrX:105450489 chrX:105450493 nonsynonymous SNV 0.085 0 25 hm5C_associated_SNPs_104587 0 0 0 0 0 exosome 0.500231630897391 0.500231643018624 0 2.42424662566521e-08 hm5C_site_57732 DeepMRMD:0;iRNA_m5C:2.42424662566521e-08 57733 chr2 31489531 31489531 1 + C A SKCM 31489527 + 31489507 31489547 41 CGAGCTGCCCAACGAGCTGCCTGCCCACCTCCTGCCCCCGT CGAGCTGCCCAACGAGCTGCCTGCACACCTCCTGCCCCCGT < 41bp 0.355542727757294 0.773366873954212 0.04132086 0.016876698 prediction 0.546733747908425 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489527 chr2:31489531 synonymous SNV . 0 25 hm5C_associated_SNPs_104588 0 0 1 0 0 exosome 0.500231643921218 0.500231643331506 0 0 hm5C_site_57733 DeepMRMD:0;iRNA_m5C:0 57734 chr10 82126541 82126541 1 + C G rs36027713 82126540 + 82126520 82126560 41 CCTTGAAGCAGGAATTCCTGCCAGGTACTTCCAGTCTGATT CCTTGAAGCAGGAATTCCTGCGAGGTACTTCCAGTCTGATT < 41bp 0.542100782081688 0.815466376022982 0.76843107 0.900345 prediction 0.546731187882588 Functional Gain - DYDC2 ENSG00000133665 CDS Human protein_coding chr10:82126540 chr10:82126541 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_104589 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.26382786 0 hm5C_site_57734 DeepMRMD:0.26382786;iRNA_m5C:0 57735 chr17 9497556 9497556 1 + C G STAD 9497552 + 9497532 9497572 41 AAGAGAGATGCCATCTGTGGCAGCCCTGCAGCCGGCCTCAA AAGAGAGATGCCATCTGTGGCAGCGCTGCAGCCGGCCTCAA < 41bp 0.477935084351635 0.77335106937484 0.28220278 0.43939495 prediction 0.546702138749681 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9497552 chr17:9497556 nonsynonymous SNV 0.515 2 25 hm5C_associated_SNPs_104590 0 0 0 0 1 nucleus 0.500231643921428 0.500231643942593 0 4.2330361438303e-11 hm5C_site_57735 DeepMRMD:0;iRNA_m5C:4.2330361438303e-11 57736 chr19 56466446 56466446 1 + C A LUSC 56466442 + 56466422 56466462 41 TGATAAGATTTACCTCTTGGCAGACATGCAAGCCCTTGCTG TGATAAGATTTACCTCTTGGCAGAAATGCAAGCCCTTGCTG < 41bp 0.374990276149481 0.773343406848116 0.38387817 0.638242 prediction 0.546686813696232 Functional Gain - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56466442 chr19:56466446 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104591 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.276484 0 hm5C_site_57736 DeepMRMD:0.276484;iRNA_m5C:0 57737 chr2 70167996 70167996 1 + C G rs77021567 70167995 + 70167975 70168015 41 AGCCCAAGGCAGCTAATCCCCCCAACCCCATCCTCCGCGCC AGCCCAAGGCAGCTAATCCCCGCAACCCCATCCTCCGCGCC < 41bp 0.485302940014962 0.773339837297617 0.2992469 0.4120224 prediction 0.546679674595234 Functional Gain - MXD1 ENSG00000059728 UTR3 Human protein_coding chr2:70167995 chr2:70167996 . . 0 22 hm5C_associated_SNPs_104592 0 0 1 0 0 Cytosol 0.500231643921093 0.500231643921092 0 0 hm5C_site_57737 DeepMRMD:0;iRNA_m5C:0 57738 chr5 140772941 140772941 1 + T G rs11575958 140772938 + 140772918 140772958 41 CTGGACGTGCAGACTGGAGACAATGGAGCCATAAACCCAGA CTGGACGTGCAGACTGGAGACAAGGGAGCCATAAACCCAGA < 41bp 0.395725752386833 0.773337815351427 0.35746002 0.69236195 prediction 0.546675630702854 Functional Gain - PCDHGA8 ENSG00000253767 CDS Human protein_coding chr5:140772938 chr5:140772941 nonsynonymous SNV 0.549 1 24 hm5C_associated_SNPs_104593 0 0 0 0 0 exosome 0.500238720842646 0.500231643913829 0.3847239 0 hm5C_site_57738 DeepMRMD:0.3847239;iRNA_m5C:0 57739 chr7 143748067 143748067 1 + C A OV 143748063 + 143748043 143748083 41 TGTCCTCAAGTTGGCCTGTGCTGACACCTGGCTCAACCAGG TGTCCTCAAGTTGGCCTGTGCTGAAACCTGGCTCAACCAGG < 41bp 0.395762461958955 0.773334812572621 0.11859968 0.2696001 prediction 0.546669625145241 Functional Gain - OR2A5 ENSG00000221836 CDS Human protein_coding chr7:143748063 chr7:143748067 nonsynonymous SNV 0.348 1 25 hm5C_associated_SNPs_104594 0 0 0 0 0 unknown 0.500231654308112 0.500231644126491 0 0 hm5C_site_57739 DeepMRMD:0;iRNA_m5C:0 57740 chrX 118151522 118151522 1 + T A GBM 118151518 + 118151498 118151538 41 ATGAACCCGAATGGCCCAGCCTGGTGCTGGTGGATGTTAGC ATGAACCCGAATGGCCCAGCCTGGAGCTGGTGGATGTTAGC < 41bp 0.468757125312164 0.773333977670547 0.22158596 0.3767954 prediction 0.546667955341094 Functional Gain - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118151518 chrX:118151522 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_104595 0 0 0 0 1 chromatin 0.500231648633961 0.500231644248404 0 0 hm5C_site_57740 DeepMRMD:0;iRNA_m5C:0 57741 chr1 206856530 206856530 1 + T A rs139850891 206856526 + 206856506 206856546 41 CCTGAGCAGTTGGAGCCTTCCACCTTCCCACCCCTGCGTTC CCTGAGCAGTTGGAGCCTTCCACCATCCCACCCCTGCGTTC < 41bp 0.500191308353233 0.773516414166114 0.016263455 0.04396099 prediction 0.546650211625763 Functional Gain - DYRK3;MAPKAPK2 ENSG00000252853;ENSG00000162889 intergenic Human other chr1:206856526 chr1:206856530 . . 0 25 hm5C_associated_SNPs_104596 0 0 0 0 0 unknown 0.500223406087912 0.500222945573467 0 0 hm5C_site_57741 DeepMRMD:0;iRNA_m5C:0 57742 chr3 46415397 46415397 1 + C G rs1800944 46415393 + 46415373 46415413 41 TCCAGCAAGAGGCTCCCGAGCGAGCAAGCTCAGTTTACACC TCCAGCAAGAGGCTCCCGAGCGAGGAAGCTCAGTTTACACC < 41bp 0.523031541103379 0.796346568911485 0.3375443 0.8684957 prediction 0.546630055616213 Functional Gain - CCR5 ENSG00000160791 CDS Human protein_coding chr3:46415393 chr3:46415397 nonsynonymous SNV 0.013 1 25 hm5C_associated_SNPs_104597 0 0 0 0 0 exosome 0.500231643860564 0.500231642294527 0.7369914 0 hm5C_site_57742 DeepMRMD:0.7369914;iRNA_m5C:0 57743 chr5 178373429 178373429 1 + C A LUSC 178373425 + 178373405 178373445 41 GAGTGGGGGCAGCTGAGCCCCGCCCAGAGGGCCCTGTACAG GAGTGGGGGCAGCTGAGCCCCGCCAAGAGGGCCCTGTACAG < 41bp 0.6517789270079 0.925084395291866 0.02118811 0.62863386 prediction 0.546610936567932 Functional Gain - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178373425 chr5:178373429 nonsynonymous SNV 0.029 3 25 hm5C_associated_SNPs_104598 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.25726772 0 hm5C_site_57743 DeepMRMD:0.25726772;iRNA_m5C:0 57744 chr17 48610081 48610081 1 + T A rs566870748 48610077 + 48610057 48610097 41 CTGAGGCAGACCTGCCGGGCCAGCTGAGCAACTTTCCTCGG CTGAGGCAGACCTGCCGGGCCAGCAGAGCAACTTTCCTCGG < 41bp 0.53681239717741 0.810115808346227 0.78053796 0.5670027 prediction 0.546606822337633 Functional Gain - EPN3 ENSG00000049283 UTR5 Human protein_coding chr17:48610077 chr17:48610081 . . 0 25 hm5C_associated_SNPs_104599 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_57744 DeepMRMD:0;iRNA_m5C:0 57745 chr11 44148448 44148448 1 + C G SKCM 44148447 + 44148427 44148467 41 TGTTACAAGCTGGCTGTGTCCCGGTTGTCATTGCAGACTCC TGTTACAAGCTGGCTGTGTCCGGGTTGTCATTGCAGACTCC < 41bp 0.46838187481132 0.773280543127196 0.16078284 0.7304201 prediction 0.546561086254391 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148447 chr11:44148448 nonsynonymous SNV 0.909 5 22 hm5C_associated_SNPs_104600 0 0 1 0 2 Endoplasmic reticulum 0.500696590518311 0.500935489325601 0.4608402 0.000477797614580444 hm5C_site_57745 DeepMRMD:0.4608402;iRNA_m5C:0.000477797614580444 57746 chr10 38738922 38738922 1 + T G rs530698083 38738920 + 38738900 38738940 41 CCCACGCTGACAGAGGTCAGCCTGAGCCCCTTGCCTCACAC CCCACGCTGACAGAGGTCAGCCGGAGCCCCTTGCCTCACAC < 41bp 0.440875782657399 0.773276533578535 0.14169952 0.8978307 prediction 0.546553067157069 Functional Gain - LINC00999 ENSG00000225119;ENSG00000228882 intergenic Human other chr10:38738920 chr10:38738922 . . 0 23 hm5C_associated_SNPs_104601 0 0 0 0 0 nucleoplasm 0.500231554419443 0.500231458614013 0.7956614 0 hm5C_site_57746 DeepMRMD:0.7956614;iRNA_m5C:0 57747 chr16 29825970 29825970 1 + C G rs201814968 29825969 + 29825949 29825989 41 TGTATAAGTGAGGGGCTCTGCCCCGCATCCCAAGACTTTTC TGTATAAGTGAGGGGCTCTGCGCCGCATCCCAAGACTTTTC < 41bp 0.473473259014645 0.773273398294431 0.05758971 0.08829424 prediction 0.546546796588863 Functional Gain - PRRT2 ENSG00000261962 ncRNA_intronic Human other chr16:29825969 chr16:29825970 . . 0 22 hm5C_associated_SNPs_104602 0 0 0 0 1 nucleoplasm 0.500231643922299 0.500231643921092 0 0 hm5C_site_57747 DeepMRMD:0;iRNA_m5C:0 57748 chr22 37326508 37326508 1 + C A LUAD 37326504 + 37326484 37326524 41 GGAGGTGAGGAAGGAGGTGGCCAGCTCGGTCTCCTTTGGCC GGAGGTGAGGAAGGAGGTGGCCAGATCGGTCTCCTTTGGCC < 41bp 0.376863082035192 0.773266579752958 0.8386899 0.86244965 prediction 0.546533159505917 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37326504 chr22:37326508 nonsynonymous SNV 0.025 1 25 hm5C_associated_SNPs_104603 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921054 0.0475194999999999 0 hm5C_site_57748 DeepMRMD:0.0475194999999999;iRNA_m5C:0 57749 chr10 82126541 82126541 1 + C G rs36027713 82126537 + 82126517 82126557 41 AGGCCTTGAAGCAGGAATTCCTGCCAGGTACTTCCAGTCTG AGGCCTTGAAGCAGGAATTCCTGCGAGGTACTTCCAGTCTG < 41bp 0.506338661583995 0.779596935167203 0.14985958 0.4570704 prediction 0.546516547166416 Functional Gain - DYDC2 ENSG00000133665 CDS Human protein_coding chr10:82126537 chr10:82126541 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_104604 0 0 0 0 1 unknown 0.50023164286082 0.500231617650943 0 0 hm5C_site_57749 DeepMRMD:0;iRNA_m5C:0 57750 chr11 55594868 55594868 1 + C G BLCA 55594864 + 55594844 55594884 41 GGTCAGCTCTCGGCTCCACACCCCCGTGTACTTTTTCCTCA GGTCAGCTCTCGGCTCCACACCCCGGTGTACTTTTTCCTCA < 41bp 0.511829631182408 0.785087038781159 0.019951463 0.09667793 prediction 0.546514815197503 Functional Gain - OR5L2 ENSG00000205030 CDS Human protein_coding chr11:55594864 chr11:55594868 synonymous SNV . 0 25 hm5C_associated_SNPs_104605 0 0 0 0 0 unknown 0.500231643921092 0.500231640769585 0 0 hm5C_site_57750 DeepMRMD:0;iRNA_m5C:0 57751 chr14 101526154 101526154 1 + T G ESCA 101526151 + 101526131 101526171 41 TATTTGTGACGAATCATACACGGTTGACCTATTTTTCAGTA TATTTGTGACGAATCATACACGGGTGACCTATTTTTCAGTA < 41bp 0.449940310923528 0.773244766627192 0.17347124 0.5879647 prediction 0.546489533254383 Functional Gain - MIR154 ENSG00000207978 ncRNA_exonic Human miRNA chr14:101526151 chr14:101526154 . . 0 24 hm5C_associated_SNPs_104606 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0.1759294 0 hm5C_site_57751 DeepMRMD:0.1759294;iRNA_m5C:0 57752 chr11 125237779 125237779 1 + C A UCEC 125237775 + 125237755 125237795 41 CCCAGCCACCCTCCAAGGCCCAGGCTGTCCACATCTCTGCC CCCAGCCACCCTCCAAGGCCCAGGATGTCCACATCTCTGCC < 41bp 0.373798859041491 0.773242883497623 0.066012084 0.07785675 prediction 0.546485766995247 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125237775 chr11:125237779 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_104607 0 0 0 0 1 exosome 0.500231630839019 0.500231638498011 0 1.5317985546659e-08 hm5C_site_57752 DeepMRMD:0;iRNA_m5C:1.5317985546659e-08 57753 chr3 99513529 99513529 1 + C A LUSC 99513525 + 99513505 99513545 41 AAGGGGCCTCCAGGGATGCACGGCCCTCCCGGCCCTGTTGG AAGGGGCCTCCAGGGATGCACGGCACTCCCGGCCCTGTTGG < 41bp 0.633629580579694 0.906870753096087 0.89258224 0.87828404 prediction 0.546482345032786 Functional Gain - COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99513525 chr3:99513529 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_104608 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921121 0 5.79536418854332e-14 hm5C_site_57753 DeepMRMD:0;iRNA_m5C:5.79536418854332e-14 57754 chr2 95691579 95691579 1 + T A rs528873033 95691575 + 95691555 95691595 41 GACGGGGGGCAGCACCCTGCCCAGTGGCTTCTCGGTCTTCA GACGGGGGGCAGCACCCTGCCCAGAGGCTTCTCGGTCTTCA < 41bp 0.535093482456931 0.808333110591783 0.027798891 0.21977893 prediction 0.546479256269704 Functional Gain - MAL ENSG00000172005 CDS Human protein_coding chr2:95691575 chr2:95691579 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_104609 0 0 0 0 1 exosome 0.500231643921073 0.500231643921078 0 9.32587340685131e-15 hm5C_site_57754 DeepMRMD:0;iRNA_m5C:9.32587340685131e-15 57755 chr11 57799050 57799050 1 + C A HNSC 57799046 + 57799026 57799066 41 CTGTGGATTTCCTGGTGTCTCTGGCTGTGCTACTGGCCTCC CTGTGGATTTCCTGGTGTCTCTGGATGTGCTACTGGCCTCC < 41bp 0.626394811073772 0.899620455463346 0.27369827 0.589648 prediction 0.546451288779147 Functional Gain - OR6Q1 ENSG00000172381 CDS Human other chr11:57799046 chr11:57799050 nonsynonymous SNV 0.613 1 25 hm5C_associated_SNPs_104610 0 0 0 0 0 unknown 0.500251061677047 0.500231643251503 0.179296 0 hm5C_site_57755 DeepMRMD:0.179296;iRNA_m5C:0 57756 chr2 220095054 220095054 1 + C A GBM 220095050 + 220095030 220095070 41 TGACCTCAGCGCGGATGCTCCGGTCTTTCAGGGCCTGAGCC TGACCTCAGCGCGGATGCTCCGGTATTTCAGGGCCTGAGCC < 41bp 0.404325919578163 0.773223683250592 0.7692579 0.872337 prediction 0.546447366501183 Functional Gain - ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220095050 chr2:220095054 synonymous SNV . 0 25 hm5C_associated_SNPs_104611 0 0 1 0 2 chromatin 0.500231643921093 0.500231643921092 0.2061582 0 hm5C_site_57756 DeepMRMD:0.2061582;iRNA_m5C:0 57757 chr8 59494819 59494819 1 + T G rs117089964 59494816 + 59494796 59494836 41 CATTCCATGTAAGCATTAAACAGTGTATGTAGGTTTCAAGA CATTCCATGTAAGCATTAAACAGGGTATGTAGGTTTCAAGA < 41bp 0.485829410739545 0.773208594914638 0.08795953 0.9158073 prediction 0.546417189829276 Functional Gain - SDCBP ENSG00000137575 UTR3 Human protein_coding chr8:59494816 chr8:59494819 . . 0 24 hm5C_associated_SNPs_104612 0 0 1 0 0 Ribosome 0.50023164386811 0.500231643921092 0.8316146 1.05965236585348e-10 hm5C_site_57757 DeepMRMD:0.8316146;iRNA_m5C:1.05965236585348e-10 57758 chr22 37333555 37333555 1 + C A LUAD 37333551 + 37333531 37333571 41 CTACCCACAGAGCAGCCCCCCAGCCCCCAGCCAGGCCCGCC CTACCCACAGAGCAGCCCCCCAGCACCCAGCCAGGCCCGCC < 41bp 0.377243224778843 0.773199880821318 0.038810283 0.017719358 prediction 0.546399761642635 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37333551 chr22:37333555 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_104613 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921084 0 0 hm5C_site_57758 DeepMRMD:0;iRNA_m5C:0 57759 chr15 40498435 40498435 1 + C A UCEC 40498431 + 40498411 40498451 41 GAGCGAGGATGCCATTATCACAGGCTTCAGAAATGTAACAA GAGCGAGGATGCCATTATCACAGGATTCAGAAATGTAACAA < 41bp 0.636622395993218 0.909815511987537 0.9184467 0.91767335 prediction 0.546386231988639 Functional Gain - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40498431 chr15:40498435 synonymous SNV . 0 25 hm5C_associated_SNPs_104614 0 0 1 0 1 Nucleus 0.50023164605031 0.500233471045474 0 3.64999032842483e-06 hm5C_site_57759 DeepMRMD:0;iRNA_m5C:3.64999032842483e-06 57760 chr1 65614154 65614154 1 + T A rs17853973 65614150 + 65614130 65614170 41 CCCGGCTCGGGCAAGGGCACCGTGTGCCAGAGGATCGCCCA CCCGGCTCGGGCAAGGGCACCGTGAGCCAGAGGATCGCCCA < 41bp 0.472419825706163 0.773185022207393 0.13724062 0.08995339 prediction 0.546370044414786 Functional Gain - AK4 ENSG00000162433 CDS Human protein_coding chr1:65614150 chr1:65614154 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_104615 0 0 0 0 1 chromatin 0.500231643144068 0.500231644056142 0 1.82414816585208e-09 hm5C_site_57760 DeepMRMD:0;iRNA_m5C:1.82414816585208e-09 57761 chr20 45355518 45355518 1 + T C SKCM 45355516 + 45355496 45355536 41 ACCCTAGTGACCTGGCTTGTCCTCAGCGAGATCTACCCTGT ACCCTAGTGACCTGGCTTGTCCCCAGCGAGATCTACCCTGT < 41bp 0.495723476290282 0.773158285642817 0.05787313 0.04933557 prediction 0.546316571285635 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355516 chr20:45355518 nonsynonymous SNV 0.951 5 23 hm5C_associated_SNPs_104616 0 0 0 0 1 Nucleus 0.500231643921226 0.50023164391954 0 0 hm5C_site_57761 DeepMRMD:0;iRNA_m5C:0 57762 chr22 42422816 42422816 1 + C A rs569421612 42422812 + 42422792 42422832 41 TGCAGGATATGGAGCCCCACCTCCCGGATACGGAGCCCCAC TGCAGGATATGGAGCCCCACCTCCAGGATACGGAGCCCCAC < 41bp 0.646310566525783 0.919464580017542 0.16791523 0.9249238 prediction 0.546308026983519 Functional Gain - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42422812 chr22:42422816 synonymous SNV . 0 25 hm5C_associated_SNPs_104617 0 0 0 0 1 exosome 0.500231643878108 0.500231643920856 0.8498476 8.54945003680996e-11 hm5C_site_57762 DeepMRMD:0.8498476;iRNA_m5C:8.54945003680996e-11 57763 chr11 55594870 55594870 1 + T A GBM 55594866 + 55594846 55594886 41 TCAGCTCTCGGCTCCACACCCCCGTGTACTTTTTCCTCAGC TCAGCTCTCGGCTCCACACCCCCGAGTACTTTTTCCTCAGC < 41bp 0.55490923276222 0.828049351888592 0.117336094 0.19456136 prediction 0.546280238252744 Functional Gain - OR5L2 ENSG00000205030 CDS Human protein_coding chr11:55594866 chr11:55594870 nonsynonymous SNV 0.815 2 25 hm5C_associated_SNPs_104618 0 0 0 0 0 unknown 0.500231643942955 0.500231643938526 0 0 hm5C_site_57763 DeepMRMD:0;iRNA_m5C:0 57764 chr1 27660674 27660674 1 + C A MESO 27660670 + 27660650 27660690 41 CTGCTGTGACAACTGCCACTCGCACGTGGCATTGGCCCTGA CTGCTGTGACAACTGCCACTCGCAAGTGGCATTGGCCCTGA < 41bp 0.637015510179581 0.910151438855692 0.03486091 0.15464589 prediction 0.546271857352222 Functional Gain - TMEM222 ENSG00000186501 CDS Human protein_coding chr1:27660670 chr1:27660674 nonsynonymous SNV 0.584 4 25 hm5C_associated_SNPs_104619 0 0 1 0 2 Ribosome 0.500231633905506 0.500231643921067 0 2.00311212061877e-08 hm5C_site_57764 DeepMRMD:0;iRNA_m5C:2.00311212061877e-08 57765 chr1 39976918 39976918 1 + C G rs555934078 39976917 + 39976897 39976937 41 GCTTTGACCTGACCCAGATCCCGGCTGGGGAGGCGGTCACA GCTTTGACCTGACCCAGATCCGGGCTGGGGAGGCGGTCACA < 41bp 0.462479341525076 0.773133062356799 0.8731344 0.9098753 prediction 0.546266124713598 Functional Gain - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39976917 chr1:39976918 nonsynonymous SNV 0.535 1 22 hm5C_associated_SNPs_104620 0 0 0 0 1 Endoplasmic reticulum 0.500233792792761 0.500231645755314 0.0734818000000002 0 hm5C_site_57765 DeepMRMD:0.0734818000000002;iRNA_m5C:0 57766 chr17 4488207 4488207 1 + C G rs538037200 4488206 + 4488186 4488226 41 ACTCCCGGCACGCCCAGCCCCCCGCCCGCGCCCGGGGTTCC ACTCCCGGCACGCCCAGCCCCGCGCCCGCGCCCGGGGTTCC < 41bp 0.488726592129729 0.773115642672749 0.07259837 0.3057363 prediction 0.546231285345498 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4488206 chr17:4488207 nonsynonymous SNV 0.107 3 22 hm5C_associated_SNPs_104621 0 0 0 0 1 insoluble cytoplasm 0.500231643921092 0.500231643921084 0 0 hm5C_site_57766 DeepMRMD:0;iRNA_m5C:0 57767 chr18 28968887 28968887 1 + T C LAML 28968885 + 28968865 28968905 41 GTGAAGATTTAGAAAGGCCTCTTGAGCTTAGAGTCAAAGTT GTGAAGATTTAGAAAGGCCTCTCGAGCTTAGAGTCAAAGTT < 41bp 0.492879140991794 0.773108691272285 0.018288732 0.15133047 prediction 0.546217382544571 Functional Gain - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28968885 chr18:28968887 synonymous SNV . 0 23 hm5C_associated_SNPs_104622 0 0 0 0 2 exosome 0.500232141522201 0.500237880656799 0 1.14782691951199e-05 hm5C_site_57767 DeepMRMD:0;iRNA_m5C:1.14782691951199e-05 57768 chr11 123900556 123900556 1 + T G UCEC 123900553 + 123900533 123900573 41 CATGTGGTTCTCCACTGTCACGGTGCCCAAATTGCTGATGA CATGTGGTTCTCCACTGTCACGGGGCCCAAATTGCTGATGA < 41bp 0.629835714453539 0.902940604423394 0.91752493 0.9562609 prediction 0.546209779939711 Functional Gain - OR10G8 ENSG00000234560 CDS Human protein_coding chr11:123900553 chr11:123900556 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_104623 0 0 0 0 0 unknown 0.500231643913595 0.500231643921092 0.0774719399999999 1.49953383044021e-11 hm5C_site_57768 DeepMRMD:0.0774719399999999;iRNA_m5C:1.49953383044021e-11 57769 chr22 46693337 46693337 1 + C G rs201036893 46693333 + 46693313 46693353 41 GGCCGCGATGAGCCTTCAGCCTGCCGGGCAGGGGACGTGAA GGCCGCGATGAGCCTTCAGCCTGCGGGGCAGGGGACGTGAA < 41bp 0.535751191623935 0.808852227615256 0.13350305 0.3207606 prediction 0.546202071982643 Functional Gain - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46693333 chr22:46693337 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_104624 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57769 DeepMRMD:0;iRNA_m5C:0 57770 chr4 71232423 71232423 1 + T A UCEC 71232419 + 71232399 71232439 41 ACCTGGACCACTGGCTCCTCCTCCTCCACCATGTTTTCCTT ACCTGGACCACTGGCTCCTCCTCCACCACCATGTTTTCCTT < 41bp 0.451854928892718 0.773098148138164 0.13783354 0.9140565 prediction 0.546196296276327 Functional Gain - SMR3A ENSG00000109208 CDS Human protein_coding chr4:71232419 chr4:71232423 synonymous SNV . 0 25 hm5C_associated_SNPs_104625 0 0 0 0 1 unknown 0.500231643921089 0.500231643921079 0.828113 0 hm5C_site_57770 DeepMRMD:0.828113;iRNA_m5C:0 57771 chr2 26410484 26410484 1 + C A LIHC 26410480 + 26410460 26410500 41 CTCGGGTCCTGTGGCTACCTCTGGCCCTGCGTATTCCCCAG CTCGGGTCCTGTGGCTACCTCTGGACCTGCGTATTCCCCAG < 41bp 0.631766391537761 0.904863529086716 0.6145865 0.7019294 prediction 0.546194275097909 Functional Gain - GAREM2 ENSG00000157833 CDS Human protein_coding chr2:26410480 chr2:26410484 synonymous SNV . 0 25 hm5C_associated_SNPs_104626 0 0 1 0 0 Exosome 0.500231643921093 0.500231643922525 0.1746858 2.86326518050828e-12 hm5C_site_57771 DeepMRMD:0.1746858;iRNA_m5C:2.86326518050828e-12 57772 chr6 116757938 116757938 1 + C A COAD 116757934 + 116757914 116757954 41 GTCCCGAGTCCGGAACACAGCTAGCTTTAGGAAGACTGCTG GTCCCGAGTCCGGAACACAGCTAGATTTAGGAAGACTGCTG < 41bp 0.38118997083849 0.773092672441727 0.11198819 0.07248652 prediction 0.546185344883454 Functional Gain - DSE ENSG00000111817 CDS Human protein_coding chr6:116757934 chr6:116757938 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104627 0 0 1 0 0 nucleolus 0.500231900779232 0.500231644072511 0 0 hm5C_site_57772 DeepMRMD:0;iRNA_m5C:0 57773 chrX 105161622 105161622 1 + C A COAD 105161618 + 105161598 105161638 41 GCTCAGAAGCCCATTGACATCAGACAAAGGAGTTCGCAAAA GCTCAGAAGCCCATTGACATCAGAAAAAGGAGTTCGCAAAA < 41bp 0.36516180083308 0.773085629869776 0.10779965 0.19949579 prediction 0.546171259739551 Functional Gain - NRK ENSG00000123572 CDS Human protein_coding chrX:105161618 chrX:105161622 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_104628 0 0 0 0 1 exosome 0.500231644995819 0.500231643921442 0 0 hm5C_site_57773 DeepMRMD:0;iRNA_m5C:0 57774 chr21 35341600 35341600 1 + C G rs57661989 35341596 + 35341576 35341616 41 GACGCCCAGCTCAGCAGAGACTGGCTACGGCAATCACTCAG GACGCCCAGCTCAGCAGAGACTGGGTACGGCAATCACTCAG < 41bp 0.524028501317772 0.797111593450551 0.14066416 0.53354776 prediction 0.546166184265557 Functional Gain - LINC00649 ENSG00000237945 ncRNA_exonic Human antisense chr21:35341596 chr21:35341600 . . 0 25 hm5C_associated_SNPs_104629 0 0 0 0 1 unknown 0.500231643760432 0.500230160667064 0.0670955200000001 0 hm5C_site_57774 DeepMRMD:0.0670955200000001;iRNA_m5C:0 57775 chr2 33482545 33482545 1 + C G LUAD 33482544 + 33482524 33482564 41 GTGGAGGCCCTGACCTTCTCCCGGGAACACGGGCCAGGAGT GTGGAGGCCCTGACCTTCTCCGGGGAACACGGGCCAGGAGT < 41bp 0.530550112199 0.803617191025662 0.8782184 0.9165549 prediction 0.546134157653325 Functional Gain - LTBP1 ENSG00000049323 CDS Human protein_coding chr2:33482544 chr2:33482545 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_104630 0 0 0 0 2 Endoplasmic reticulum 0.500231643995838 0.500231643937272 0.076673 0 hm5C_site_57775 DeepMRMD:0.076673;iRNA_m5C:0 57776 chr2 220136173 220136173 1 + C A LUAD 220136169 + 220136149 220136189 41 TGCCACTGCAACCTAGACATCGAGCGCCCAACCTACACCAA TGCCACTGCAACCTAGACATCGAGAGCCCAACCTACACCAA < 41bp 0.623959298766608 0.897020542890287 0.47320282 0.90409136 prediction 0.546122488247357 Functional Gain - TUBA4B ENSG00000243910 ncRNA_exonic Human protein_coding chr2:220136169 chr2:220136173 . . 0 25 hm5C_associated_SNPs_104631 0 0 0 0 0 exosome 0.500231643921139 0.500231644714231 0.80818272 1.58618274070932e-09 hm5C_site_57776 DeepMRMD:0.80818272;iRNA_m5C:1.58618274070932e-09 57777 chr19 30102776 30102776 1 + C G LUAD 30102772 + 30102752 30102792 41 TTCTGACTTTGCTGCAGATACAGCCTTTTCCTCCCTCTCCA TTCTGACTTTGCTGCAGATACAGCGTTTTCCTCCCTCTCCA < 41bp 0.488551242960953 0.773049083468108 0.012382984 0.035058647 prediction 0.546098166936215 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30102772 chr19:30102776 nonsynonymous SNV 0.020 1 25 hm5C_associated_SNPs_104632 0 0 1 0 2 Ribosome 0.500231636019688 0.500231617848822 0 0 hm5C_site_57777 DeepMRMD:0;iRNA_m5C:0 57778 chr1 63789463 63789463 1 + T A LUAD 63789459 + 63789439 63789479 41 TCAAGCGCCACCAGCAGGAGCACCTGCGCGAGCAGACGGCG TCAAGCGCCACCAGCAGGAGCACCAGCGCGAGCAGACGGCG < 41bp 0.452347545723412 0.773038920282567 0.2915874 0.42148918 prediction 0.546077840565133 Functional Gain - FOXD3 ENSG00000187140 CDS Human protein_coding chr1:63789459 chr1:63789463 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_104633 0 0 0 0 0 exosome 0.500231643921062 0.500231643921077 0 2.99760216648792e-14 hm5C_site_57778 DeepMRMD:0;iRNA_m5C:2.99760216648792e-14 57779 chr16 67877120 67877120 1 + C A STAD 67877116 + 67877096 67877136 41 TGCTACCGCAGGGCTGGAGGCTGCCGAGTGCCCTATGGGCC TGCTACCGCAGGGCTGGAGGCTGCAGAGTGCCCTATGGGCC < 41bp 0.632652924205669 0.905685988575264 0.35348272 0.6672542 prediction 0.546066128739189 Functional Gain - THAP11 ENSG00000168286 CDS Human protein_coding chr16:67877116 chr16:67877120 synonymous SNV . 0 25 hm5C_associated_SNPs_104634 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.3345084 0 hm5C_site_57779 DeepMRMD:0.3345084;iRNA_m5C:0 57780 chr19 804074 804074 1 + C G SKCM 804070 + 804050 804090 41 AGCAAGAAGTTCAAAGGTGACAGCCGAAGTGCAGGCGTCCC AGCAAGAAGTTCAAAGGTGACAGCGGAAGTGCAGGCGTCCC < 41bp 0.485259775354064 0.773022097555104 0.16007015 0.27885926 prediction 0.546044195110209 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804070 chr19:804074 nonsynonymous SNV 0.418 2 25 hm5C_associated_SNPs_104635 0 0 1 0 1 Cytosol 0.50023164392105 0.500231643793137 0 0 hm5C_site_57780 DeepMRMD:0;iRNA_m5C:0 57781 chr4 159176039 159176039 1 + C A rs17037314 159176035 + 159176015 159176055 41 AGTTCCTAAGCCCTCTGTGTCAGGCCCCTCATTAACAAAAT AGTTCCTAAGCCCTCTGTGTCAGGACCCTCATTAACAAAAT < 41bp 0.463446525931652 0.773020853978583 0.44589233 0.7476944 prediction 0.546041707957166 Functional Gain - TMEM144 ENSG00000164124 UTR3 Human protein_coding chr4:159176035 chr4:159176039 . . 0 25 hm5C_associated_SNPs_104636 0 0 0 1 0 Ribosome 0.500231643921092 0.500231643921092 0.4953888 0 hm5C_site_57781 DeepMRMD:0.4953888;iRNA_m5C:0 57782 chr22 23465281 23465281 1 + T A LUSC 23465277 + 23465257 23465297 41 TACTTTCCTTTCCCCAGAGTCGGATGGCAGAGAGCTTGCGC TACTTTCCTTTCCCCAGAGTCGGAAGGCAGAGAGCTTGCGC < 41bp 0.470758929473954 0.773020310340714 0.50251454 0.4695907 prediction 0.546040620681428 Functional Gain - GNAZ ENSG00000128266 CDS Human protein_coding chr22:23465277 chr22:23465281 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_104637 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57782 DeepMRMD:0;iRNA_m5C:0 57783 chr9 137704471 137704471 1 + C A ESCA 137704467 + 137704447 137704487 41 CTAGGGCCCCCCGGGTCCCCCTGGCCCCCGAGGACCCTCCG CTAGGGCCCCCCGGGTCCCCCTGGACCCCGAGGACCCTCCG < 41bp 0.391283887675837 0.773001014737547 0.7716999 0.6828373 prediction 0.546002029475094 Functional Gain - COL5A1 ENSG00000130635 CDS Human protein_coding chr9:137704467 chr9:137704471 synonymous SNV . 0 25 hm5C_associated_SNPs_104638 0 0 0 0 2 Nucleus 0.500231646945903 0.500231643926165 0 0 hm5C_site_57783 DeepMRMD:0;iRNA_m5C:0 57784 chr19 50957291 50957291 1 + C G rs200073552 50957290 + 50957270 50957310 41 CGTTCAGGTATTCACGACCACCGAGGGCAGGACCCGCATCG CGTTCAGGTATTCACGACCACGGAGGGCAGGACCCGCATCG < 41bp 0.460184014137292 0.772987300960078 0.541162 0.847467 prediction 0.545974601920155 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957290 chr19:50957291 synonymous SNV . 0 22 hm5C_associated_SNPs_104639 0 0 0 0 1 exosome 0.50023164392125 0.500231643921093 0.61261 0 hm5C_site_57784 DeepMRMD:0.61261;iRNA_m5C:0 57785 chr11 60470880 60470880 1 + C A LUSC 60470876 + 60470856 60470896 41 CCAGATCATCATTGGCCTGGCTCACATCGGCCTCGGCTCCA CCAGATCATCATTGGCCTGGCTCAAATCGGCCTCGGCTCCA < 41bp 0.350360322556031 0.772978430047147 0.11980125 0.26716572 prediction 0.545956860094293 Functional Gain - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60470876 chr11:60470880 nonsynonymous SNV 0.158 3 25 hm5C_associated_SNPs_104640 0 0 0 0 2 Cytosol 0.500231592828217 0.500231642391099 0 9.91257640414744e-08 hm5C_site_57785 DeepMRMD:0;iRNA_m5C:9.91257640414744e-08 57786 chr17 9632044 9632044 1 + C A rs187085115 9632040 + 9632020 9632060 41 GGGCTGAGCCCTGCCATGGACGGGCAGGCTCCAGGCTCACC GGGCTGAGCCCTGCCATGGACGGGAAGGCTCCAGGCTCACC < 41bp 0.627835676074232 0.900812382498719 0.8924105 0.90449893 prediction 0.545953412848975 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9632040 chr17:9632044 nonsynonymous SNV 0.028 0 25 hm5C_associated_SNPs_104641 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0.0241768600000001 0 hm5C_site_57786 DeepMRMD:0.0241768600000001;iRNA_m5C:0 57787 chr19 19655270 19655270 1 + C A CESC 19655266 + 19655246 19655286 41 ACGGCGAGCTGGCTCCACTGCGCACCTACGGCATGTTCTCC ACGGCGAGCTGGCTCCACTGCGCAACTACGGCATGTTCTCC < 41bp 0.364340304245394 0.772966785011963 0.05055675 0.08144608 prediction 0.545933570023926 Functional Gain - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19655266 chr19:19655270 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_104642 0 0 0 0 0 exosome 0.500231650451764 0.500231643920916 0 0 hm5C_site_57787 DeepMRMD:0;iRNA_m5C:0 57788 chr19 1271648 1271648 1 + C A rs115311065 1271644 + 1271624 1271664 41 TATAGCAGGTGAGGGGGAGGCCGGCCCAAGCACAGGGGTGG TATAGCAGGTGAGGGGGAGGCCGGACCAAGCACAGGGGTGG < 41bp 0.411396566932063 0.772965742833144 0.89243877 0.88697326 prediction 0.545931485666287 Functional Gain - CIRBP ENSG00000099622 UTR3 Human protein_coding chr19:1271644 chr19:1271648 . . 0 25 hm5C_associated_SNPs_104643 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57788 DeepMRMD:0;iRNA_m5C:0 57789 chr15 45007681 45007681 1 + T G COAD 45007679 + 45007659 45007699 41 GAGAATGGAAAGTCAAATTTCCTGAATTGCTATGTGTCTGG GAGAATGGAAAGTCAAATTTCCGGAATTGCTATGTGTCTGG < 41bp 0.566085202993539 0.839045446766961 0.17098978 0.40755737 prediction 0.545920487546842 Functional Gain - B2M ENSG00000166710 CDS Human protein_coding chr15:45007679 chr15:45007681 nonsynonymous SNV 0.674 3 23 hm5C_associated_SNPs_104644 0 0 1 0 2 Ribosome 0.500231812458806 0.50023162616113 0 0 hm5C_site_57789 DeepMRMD:0;iRNA_m5C:0 57790 chr14 101539130 101539130 1 + C G rs148000032 101539129 + 101539109 101539149 41 TGGGGATGAGCGCCGAGTGGCCGTGGACTAAGTGAAGGAAA TGGGGATGAGCGCCGAGTGGCGGTGGACTAAGTGAAGGAAA < 41bp 0.484720270372751 0.772955369506713 0.043537974 0.355067 prediction 0.545910739013426 Functional Gain - MEG9 ENSG00000223403 ncRNA_exonic Human lincRNA chr14:101539129 chr14:101539130 . . 0 22 hm5C_associated_SNPs_104645 0 0 0 0 0 unknown 0.50023223516265 0.500231709566235 0 0 hm5C_site_57790 DeepMRMD:0;iRNA_m5C:0 57791 chr22 46202885 46202885 1 + T G UCEC 46202883 + 46202863 46202903 41 TTGATCCTGGACAACTGCAACATCAGTGACAGTAACCCCTG TTGATCCTGGACAACTGCAACAGCAGTGACAGTAACCCCTG < 41bp 0.577937691708043 0.850887095495399 0.14720637 0.48527583 prediction 0.545898807574711 Functional Gain - ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46202883 chr22:46202885 nonsynonymous SNV 0.636 2 23 hm5C_associated_SNPs_104646 0 0 1 0 2 Cytosol 0.500231540807657 0.5002392000817 0 1.53185480848972e-05 hm5C_site_57791 DeepMRMD:0;iRNA_m5C:1.53185480848972e-05 57792 chr9 124546745 124546745 1 + C G rs563239696 124546744 + 124546724 124546764 41 CAGGCGGGCTCGGAGGCTACCCGCTGTGGCCGGTGCCAGCT CAGGCGGGCTCGGAGGCTACCGGCTGTGGCCGGTGCCAGCT < 41bp 0.543075473032081 0.815995663136975 0.2577459 0.8682211 prediction 0.54584038020979 Functional Gain - DAB2IP ENSG00000136848 UTR3 Human protein_coding chr9:124546744 chr9:124546745 . . 0 22 hm5C_associated_SNPs_104647 0 0 0 0 0 Ribosome 0.500231643921117 0.50023163600853 0.7364422 0 hm5C_site_57792 DeepMRMD:0.7364422;iRNA_m5C:0 57793 chr14 74824495 74824495 1 + C G SKCM 74824494 + 74824474 74824514 41 GTGCCACTTCAGCAGTTCCTCCAGCGGTTCCCGGAGATCTC GTGCCACTTCAGCAGTTCCTCGAGCGGTTCCCGGAGATCTC < 41bp 0.460439740906956 0.772918757753038 0.30690393 0.8847699 prediction 0.545837515506076 Functional Gain - VRTN ENSG00000133980 CDS Human protein_coding chr14:74824494 chr14:74824495 nonsynonymous SNV 0.878 0 22 hm5C_associated_SNPs_104648 0 0 0 0 0 unknown 0.500231643925342 0.500231643958926 0.7695398 6.71680489006121e-11 hm5C_site_57793 DeepMRMD:0.7695398;iRNA_m5C:6.71680489006121e-11 57794 chr2 237489665 237489665 1 + T G UCEC 237489663 + 237489643 237489683 41 GACACCTACTACCTGAAGACCGTCACGTCTGCGTCCAACAA GACACCTACTACCTGAAGACCGGCACGTCTGCGTCCAACAA < 41bp 0.585902767122739 0.858808825143702 0.05542004 0.13895133 prediction 0.545812116041925 Functional Gain - ACKR3 ENSG00000144476 CDS Human protein_coding chr2:237489663 chr2:237489665 nonsynonymous SNV 0.982 1 23 hm5C_associated_SNPs_104649 0 0 0 0 0 Nucleus 0.50023195685777 0.500231643900318 0 0 hm5C_site_57794 DeepMRMD:0;iRNA_m5C:0 57795 chr19 11558533 11558533 1 + C G rs201537803 11558532 + 11558512 11558552 41 CCCCACCGCCACTGTCACCCCCGCAGCCGGCCAGCCCTGCT CCCCACCGCCACTGTCACCCCGGCAGCCGGCCAGCCCTGCT < 41bp 0.561495304586636 0.834393272368378 0.34685236 0.8276444 prediction 0.545795935563485 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11558532 chr19:11558533 nonsynonymous SNV 0.020 0 22 hm5C_associated_SNPs_104650 0 0 1 0 2 Nucleus 0.500231644604844 0.500231642363682 0.6552888 0 hm5C_site_57795 DeepMRMD:0.6552888;iRNA_m5C:0 57796 chr1 42922666 42922666 1 + T A COAD 42922662 + 42922642 42922682 41 CAGGAGGCTGCGGCTGCAGGCACCTTCCTGGCAGTAGAGTT CAGGAGGCTGCGGCTGCAGGCACCATCCTGGCAGTAGAGTT < 41bp 0.46422322739231 0.77289435319896 0.23297441 0.4177921 prediction 0.545788706397919 Functional Gain - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922662 chr1:42922666 nonsynonymous SNV 0.976 1 25 hm5C_associated_SNPs_104651 0 0 0 0 1 Ribosome 0.500231521570012 0.500231227106837 0 0 hm5C_site_57796 DeepMRMD:0;iRNA_m5C:0 57797 chr19 12781529 12781529 1 + C G rs534072360 12781528 + 12781508 12781548 41 GGCTCTATTGATTCCAGTATCCGCTGTTGGGATTGCCGCTC GGCTCTATTGATTCCAGTATCGGCTGTTGGGATTGCCGCTC < 41bp 0.571576313974677 0.844428771876917 0.35901403 0.9160388 prediction 0.54570491580448 Functional Gain - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12781528 chr19:12781529 nonsynonymous SNV 0.965 3 22 hm5C_associated_SNPs_104652 0 0 0 0 1 chromatin 0.500231644003873 0.500231643916311 0.8320776 0 hm5C_site_57797 DeepMRMD:0.8320776;iRNA_m5C:0 57798 chrX 14550407 14550407 1 + T C UCEC 14550405 + 14550385 14550425 41 CTCCAGGTCTGGAAAACAACCTTCACAGACCCTATCTCCTT CTCCAGGTCTGGAAAACAACCTCCACAGACCCTATCTCCTT < 41bp 0.477352100820912 0.772851680887173 0.123155 0.9327204 prediction 0.545703361774346 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14550405 chrX:14550407 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_104653 0 0 0 0 2 nucleus 0.500231643921092 0.500231643921092 0.8654408 0 hm5C_site_57798 DeepMRMD:0.8654408;iRNA_m5C:0 57799 chr19 18499422 18499422 1 + C G rs1058587 18499421 + 18499401 18499441 41 GCGCGTGCGCGCAACGGGGACCACTGTCCGCTCGGGCCCGG GCGCGTGCGCGCAACGGGGACGACTGTCCGCTCGGGCCCGG < 41bp 0.540973310254331 0.81382017228899 0.22458881 0.284122 prediction 0.545693724069316 Functional Gain - GDF15 ENSG00000130513 CDS Human protein_coding chr19:18499421 chr19:18499422 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_104654 0 0 1 0 0 Ribosome 0.500231643931658 0.500231643921139 0 0 hm5C_site_57799 DeepMRMD:0;iRNA_m5C:0 57800 chrX 100805631 100805631 1 + T G rs7055900 100805629 + 100805609 100805649 41 GGAAGGAGGACGAGGTTCTGCCTGGATCCCAGCAGGTTTGT GGAAGGAGGACGAGGTTCTGCCGGGATCCCAGCAGGTTTGT < 41bp 0.596115208254566 0.868958914958496 0.07026908 0.8565323 prediction 0.54568741340786 Functional Gain - ARMCX1 ENSG00000126947 UTR5 Human protein_coding chrX:100805629 chrX:100805631 . . 0 23 hm5C_associated_SNPs_104655 0 0 0 0 1 exosome 0.500231643921061 0.50023164392113 0.7130646 1.37667655053519e-13 hm5C_site_57800 DeepMRMD:0.7130646;iRNA_m5C:1.37667655053519e-13 57801 chr16 85691118 85691118 1 + C G rs149163248 85691117 + 85691097 85691137 41 GGACCGGCAGTCTCAGGTGTCCGAGTTCCGGCAGCAGGTGC GGACCGGCAGTCTCAGGTGTCGGAGTTCCGGCAGCAGGTGC < 41bp 0.561526250713232 0.834359356642912 0.8670444 0.92269313 prediction 0.545666211859361 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691117 chr16:85691118 synonymous SNV . 0 22 hm5C_associated_SNPs_104656 0 0 1 0 1 Cytosol 0.50023164392072 0.500231643921182 0.11129746 9.2414964569798e-13 hm5C_site_57801 DeepMRMD:0.11129746;iRNA_m5C:9.2414964569798e-13 57802 chr19 7032688 7032688 1 + T A rs546333992 7032684 + 7032664 7032704 41 GAGCTGGTGCTGAGCGTGTGCGCATCCCGCTTGAGCCCACC GAGCTGGTGCTGAGCGTGTGCGCAACCCGCTTGAGCCCACC < 41bp 0.545756332817235 0.818587443343186 0.19863048 0.33170903 prediction 0.545662221051902 Functional Gain - MBD3L5 ENSG00000237247 CDS Human protein_coding chr19:7032684 chr19:7032688 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_104657 0 0 0 0 0 unknown 0.500231571410254 0.500231643918634 0 1.45016760377814e-07 hm5C_site_57802 DeepMRMD:0;iRNA_m5C:1.45016760377814e-07 57803 chr5 140552558 140552558 1 + T A rs17096945 140552554 + 140552534 140552574 41 GAGAGAGGCACCTTTCTTACCAACTTGGCAAAAGACCTAGG GAGAGAGGCACCTTTCTTACCAACATGGCAAAAGACCTAGG < 41bp 0.545144067317988 0.817966319246351 0.22362718 0.141992 prediction 0.545644503856727 Functional Gain - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140552554 chr5:140552558 nonsynonymous SNV 0.148 1 25 hm5C_associated_SNPs_104658 0 0 0 0 0 exosome 0.500231643921092 0.50023164392111 0 3.530509218308e-14 hm5C_site_57803 DeepMRMD:0;iRNA_m5C:3.530509218308e-14 57804 chr17 48456193 48456193 1 + T C rs12450550 48456191 + 48456171 48456211 41 CTTCAGGGCTTTGTAACTGACATCACAGCAAAGACAGCAGG CTTCAGGGCTTTGTAACTGACACCACAGCAAAGACAGCAGG < 41bp 0.511149659307991 0.783953375689933 0.10138005 0.04144934 prediction 0.545607432763884 Functional Gain - EME1 ENSG00000154920 CDS Human protein_coding chr17:48456191 chr17:48456193 nonsynonymous SNV 0.607 0 23 hm5C_associated_SNPs_104659 0 0 1 0 2 membrane 0.500231643915265 0.500231643921313 0 1.20956578086862e-11 hm5C_site_57804 DeepMRMD:0;iRNA_m5C:1.20956578086862e-11 57805 chr16 129531 129531 1 + C G rs2259275 129527 + 129507 129547 41 TGCAGAGCAGCCACACAGCTCGTCCGATGCAGCCCAGGCAC TGCAGAGCAGCCACACAGCTCGTCGGATGCAGCCCAGGCAC < 41bp 0.494680679897898 0.772795678355367 0.14775032 0.30410558 prediction 0.545591356710734 Functional Gain - MPG ENSG00000103152 CDS Human protein_coding chr16:129527 chr16:129531 synonymous SNV . 0 25 hm5C_associated_SNPs_104660 0 0 1 0 0 Ribosome 0.500231631429218 0.500015695851713 0 0 hm5C_site_57805 DeepMRMD:0;iRNA_m5C:0 57806 chr15 29398963 29398963 1 + T A STAD 29398959 + 29398939 29398979 41 CTGAGCATCGGGGACCAGATCATGTCCATCAATGGCACCAG CTGAGCATCGGGGACCAGATCATGACCATCAATGGCACCAG < 41bp 0.457271641300118 0.772783182367231 0.5350647 0.4695823 prediction 0.545566364734462 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29398959 chr15:29398963 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104661 0 0 0 0 1 Cytosol 0.500231643921059 0.500231643921039 0 0 hm5C_site_57806 DeepMRMD:0;iRNA_m5C:0 57807 chr19 51728522 51728522 1 + T G MESO 51728519 + 51728499 51728539 41 CTGGCTGCAAGTGCAGGAGTCAGTGACGGTACAGGAGGGTT CTGGCTGCAAGTGCAGGAGTCAGGGACGGTACAGGAGGGTT < 41bp 0.382091882551757 0.772771361534085 0.20453164 0.85955846 prediction 0.54554272306817 Functional Gain - CD33 ENSG00000105383 CDS Human protein_coding chr19:51728519 chr19:51728522 nonsynonymous SNV 0.038 3 24 hm5C_associated_SNPs_104662 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.71911692 0 hm5C_site_57807 DeepMRMD:0.71911692;iRNA_m5C:0 57808 chr5 140433455 140433455 1 + T A LUAD 140433451 + 140433431 140433471 41 CTCCAGTTTGCCCCCAAATTCTGATAGGAATAAGTCTCAGA CTCCAGTTTGCCCCCAAATTCTGAAAGGAATAAGTCTCAGA < 41bp 0.459925275411367 0.772771047340257 0.28450778 0.3307606 prediction 0.545542094680515 Functional Gain - PCDHB1 ENSG00000171815 CDS Human protein_coding chr5:140433451 chr5:140433455 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_104663 0 0 0 0 0 unknown 0.500231643921061 0.500231643920716 0 0 hm5C_site_57808 DeepMRMD:0;iRNA_m5C:0 57809 chr22 44585003 44585003 1 + C G THCA 44584999 + 44584979 44585019 41 CTCTCCTGCCTCCAGAGAGGCTGGCGGCGCTCAAGCTGGAA CTCTCCTGCCTCCAGAGAGGCTGGGGGCGCTCAAGCTGGAA < 41bp 0.482426328543616 0.772769169047199 0.5243658 0.86963093 prediction 0.545538338094397 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44584999 chr22:44585003 nonsynonymous SNV 0.370 1 25 hm5C_associated_SNPs_104664 0 0 0 0 1 exosome 0.500231643936865 0.500231643440652 0.69053026 0 hm5C_site_57809 DeepMRMD:0.69053026;iRNA_m5C:0 57810 chr8 125559294 125559294 1 + T G STAD 125559292 + 125559272 125559312 41 CTTCTGAGAAGGCAATGTATCCTGATTACTTTGCCAAGAGA CTTCTGAGAAGGCAATGTATCCGGATTACTTTGCCAAGAGA < 41bp 0.587539107581052 0.860296632062845 0.38820556 0.87901866 prediction 0.545515048963587 Functional Gain - NDUFB9 ENSG00000147684 CDS Human protein_coding chr8:125559292 chr8:125559294 synonymous SNV . 0 23 hm5C_associated_SNPs_104665 0 0 1 0 2 Ribosome 0.500231643921827 0.500231643923812 0.75803732 3.97015753605956e-12 hm5C_site_57810 DeepMRMD:0.75803732;iRNA_m5C:3.97015753605956e-12 57811 chr19 49261405 49261405 1 + C A LUAD 49261401 + 49261381 49261421 41 CGGAATCCTGGCCCCCCAGCCCCCCGATGTGGGCTCCTCGG CGGAATCCTGGCCCCCCAGCCCCCAGATGTGGGCTCCTCGG < 41bp 0.359509593168846 0.772755529776505 0.20276582 0.584722 prediction 0.545511059553011 Functional Gain - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49261401 chr19:49261405 synonymous SNV . 0 25 hm5C_associated_SNPs_104666 0 0 0 0 0 unknown 0.500230351422254 0.500231643569326 0.169444 2.58429414334849e-06 hm5C_site_57811 DeepMRMD:0.169444;iRNA_m5C:2.58429414334849e-06 57812 chr18 42643746 42643746 1 + C A rs182854123 42643742 + 42643722 42643762 41 AGCCGGGGCGGGGGCGGAATCCCCCGCTGCAGGGACACCCA AGCCGGGGCGGGGGCGGAATCCCCAGCTGCAGGGACACCCA < 41bp 0.41638727677057 0.772754545524979 0.32268405 0.80608135 prediction 0.545509091049958 Functional Gain - SETBP1 ENSG00000152217 UTR3 Human protein_coding chr18:42643742 chr18:42643746 . . 0 25 hm5C_associated_SNPs_104667 0 0 0 0 0 nucleus 0.500231618421326 0.500231819829107 0.6121627 4.02815561129088e-07 hm5C_site_57812 DeepMRMD:0.6121627;iRNA_m5C:4.02815561129088e-07 57813 chr12 105380151 105380151 1 + C G SARC 105380150 + 105380130 105380170 41 CATGGAGGTCCATGGCAAGCCCAAGGCTAGCCCGAGTTGTT CATGGAGGTCCATGGCAAGCCGAAGGCTAGCCCGAGTTGTT < 41bp 0.524021183550159 0.796763084481346 0.2682331 0.4823559 prediction 0.545483801862374 Functional Gain - C12orf45 ENSG00000151131 CDS Human protein_coding chr12:105380150 chr12:105380151 synonymous SNV . 0 22 hm5C_associated_SNPs_104668 0 0 1 0 1 Ribosome 0.500231655527821 0.500231643920466 0 0 hm5C_site_57813 DeepMRMD:0;iRNA_m5C:0 57814 chr3 46307111 46307111 1 + C A STAD 46307107 + 46307087 46307127 41 TGTCACTTTTGGTGTCATCACCAGCATCGTCACCTGGGGCC TGTCACTTTTGGTGTCATCACCAGAATCGTCACCTGGGGCC < 41bp 0.376604253076708 0.772735044283151 0.25984132 0.64650476 prediction 0.545470088566302 Functional Gain - CCR3 ENSG00000183625 CDS Human protein_coding chr3:46307107 chr3:46307111 nonsynonymous SNV 0.012 4 25 hm5C_associated_SNPs_104669 0 0 0 0 0 exosome 0.5002461987479 0.500231646130256 0.29300952 0 hm5C_site_57814 DeepMRMD:0.29300952;iRNA_m5C:0 57815 chr4 71859352 71859352 1 + C A rs2306744 71859348 + 71859328 71859368 41 GCGGCTTGAGGAGGGCGGGGCCGCCCCGCAGGCCCGCCAGT GCGGCTTGAGGAGGGCGGGGCCGCACCGCAGGCCCGCCAGT < 41bp 0.425873495080776 0.772728308331413 0.73721635 0.83408564 prediction 0.545456616662826 Functional Gain - DCK ENSG00000156136 UTR5 Human protein_coding chr4:71859348 chr4:71859352 . . 0 25 hm5C_associated_SNPs_104670 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921096 0.19373858 7.105427357601e-15 hm5C_site_57815 DeepMRMD:0.19373858;iRNA_m5C:7.105427357601e-15 57816 chr11 6806907 6806907 1 + T A LUSC 6806903 + 6806883 6806923 41 CTTCCTGATTCCCTCTCTTGCTGCTATACTGGCCTCCTATA CTTCCTGATTCCCTCTCTTGCTGCAATACTGGCCTCCTATA < 41bp 0.561699163658918 0.834419909814572 0.08871794 0.056345373 prediction 0.545441492311309 Functional Gain - OR2AG1 ENSG00000170803 CDS Human other chr11:6806903 chr11:6806907 synonymous SNV . 0 25 hm5C_associated_SNPs_104671 0 0 0 0 0 unknown 0.500231641825224 0.500231637127159 0 0 hm5C_site_57816 DeepMRMD:0;iRNA_m5C:0 57817 chr9 135866446 135866446 1 + C G rs148238677 135866445 + 135866425 135866465 41 CAATCTCAAGTGAGGCTGCGCCGGCTCCCAGCTCCTGGCCA CAATCTCAAGTGAGGCTGCGCGGGCTCCCAGCTCCTGGCCA < 41bp 0.534408659745481 0.807128434956801 0.3015702 0.84212697 prediction 0.545439550422639 Functional Gain - GFI1B ENSG00000165702 UTR3 Human protein_coding chr9:135866445 chr9:135866446 . . 0 22 hm5C_associated_SNPs_104672 0 0 1 0 0 chromatin 0.500231645962686 0.50023164216065 0.68425394 0 hm5C_site_57817 DeepMRMD:0.68425394;iRNA_m5C:0 57818 chr11 64360331 64360331 1 + T A LUAD 64360327 + 64360307 64360347 41 GGCTGGGATTCTGGTGGGAGCTGCTGCGTGCGGCCCTGCCT GGCTGGGATTCTGGTGGGAGCTGCAGCGTGCGGCCCTGCCT < 41bp 0.570992802014933 0.843703474611764 0.55457795 0.78932905 prediction 0.545421345193661 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64360327 chr11:64360331 synonymous SNV . 0 25 hm5C_associated_SNPs_104673 0 0 0 0 2 unknown 0.500231643921067 0.500231643872549 0.4695022 0 hm5C_site_57818 DeepMRMD:0.4695022;iRNA_m5C:0 Estimated glomerular filtration rate 57819 chr11 56143261 56143261 1 + T A KIRC 56143257 + 56143237 56143277 41 CCTACTCATTAGAGCGGATACAAGTCTCAACACACCAATGT CCTACTCATTAGAGCGGATACAAGACTCAACACACCAATGT < 41bp 0.517206378187097 0.789914371495373 0.3095062 0.5457158 prediction 0.545415986616553 Functional Gain - OR8U1;OR8U8 ENSG00000172199 CDS Human protein_coding chr11:56143257 chr11:56143261 nonsynonymous SNV 0.062 0 25 hm5C_associated_SNPs_104674 0 0 0 0 0 unknown 0.500231643920274 0.500231643921177 0.0914315999999999 1.80655490567005e-12 hm5C_site_57819 DeepMRMD:0.0914315999999999;iRNA_m5C:1.80655490567005e-12 57820 chr1 26349285 26349285 1 + C A UCEC 26349281 + 26349261 26349301 41 GCTTCCCAAGGCTGGCCCCGCTGGCTGGATGCAGAGCTCCT GCTTCCCAAGGCTGGCCCCGCTGGATGGATGCAGAGCTCCT < 41bp 0.628962812484531 0.901670575103112 0.3520977 0.37284982 prediction 0.545415525237161 Functional Gain - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26349281 chr1:26349285 nonsynonymous SNV 0.979 3 25 hm5C_associated_SNPs_104675 0 0 0 0 0 chromatin 0.500231531938845 0.500231514671735 0 0 hm5C_site_57820 DeepMRMD:0;iRNA_m5C:0 57821 chr8 42025245 42025245 1 + T C UCEC 42025243 + 42025223 42025263 41 CTACCAAGTTTGAAGGGGACCATGAGTCTTCAGGCTGGAGC CTACCAAGTTTGAAGGGGACCACGAGTCTTCAGGCTGGAGC < 41bp 0.517083616677982 0.789773860513972 0.07883492 0.09759125 prediction 0.545380487671982 Functional Gain - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42025243 chr8:42025245 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_104676 0 0 1 0 2 Nucleus 0.500231644996567 0.500231657954281 0 2.5915428025769e-08 hm5C_site_57821 DeepMRMD:0;iRNA_m5C:2.5915428025769e-08 57822 chr15 90801295 90801295 1 + C A OV 90801291 + 90801271 90801311 41 AAGCTGTCGACACTCAACATCTGGCTGCAAGAGCACAGCTA AAGCTGTCGACACTCAACATCTGGATGCAAGAGCACAGCTA < 41bp 0.370307472647586 0.772684157831324 0.13178048 0.21979374 prediction 0.545368315662648 Functional Gain - TTLL13P ENSG00000213471 CDS Human protein_coding chr15:90801291 chr15:90801295 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_104677 0 0 0 0 1 unknown 0.500261420540273 0.500285746980046 0 4.86528795473617e-05 hm5C_site_57822 DeepMRMD:0;iRNA_m5C:4.86528795473617e-05 57823 chr20 30584698 30584698 1 + T A HNSC 30584694 + 30584674 30584714 41 CCCTCTACCACTGCATCGTCCTGCTGGAGAACGCCGCGCTC CCCTCTACCACTGCATCGTCCTGCAGGAGAACGCCGCGCTC < 41bp 0.575400482994483 0.848071929704977 0.46077523 0.8051093 prediction 0.545342893420987 Functional Gain - XKR7 ENSG00000260903 CDS Human protein_coding chr20:30584694 chr20:30584698 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_104678 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.6102186 0 hm5C_site_57823 DeepMRMD:0.6102186;iRNA_m5C:0 57824 chr9 140127698 140127698 1 + T A LIHC 140127694 + 140127674 140127714 41 TCGGCGGTGCACGGGATCTTCAACTGGCTCACAGTGCTGGT TCGGCGGTGCACGGGATCTTCAACAGGCTCACAGTGCTGGT < 41bp 0.568267632896072 0.840931403150157 0.64712894 0.46485102 prediction 0.545327540508171 Functional Gain - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140127694 chr9:140127698 nonsynonymous SNV 0.987 5 25 hm5C_associated_SNPs_104679 0 0 0 0 1 exosome 0.5002316440883 0.500231643925744 0 0 hm5C_site_57824 DeepMRMD:0;iRNA_m5C:0 57825 chr5 115298600 115298600 1 + C G KIRC 115298596 + 115298576 115298616 41 CGACCCCCGGGGCCCTGGGACCAGCTACGCCTGCCGCCCTG CGACCCCCGGGGCCCTGGGACCAGGTACGCCTGCCGCCCTG < 41bp 0.537537635195599 0.810194091038724 0.74069995 0.9200431 prediction 0.545312911686251 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115298596 chr5:115298600 nonsynonymous SNV 0.482 0 25 hm5C_associated_SNPs_104680 0 0 0 0 0 Cytosol 0.500231643921094 0.500231643921092 0.3586863 0 hm5C_site_57825 DeepMRMD:0.3586863;iRNA_m5C:0 57826 chr11 65632497 65632497 1 + C A COAD 65632493 + 65632473 65632513 41 CCCTTCTTCCCTCAGGGCCACACCCTACGCAGCCGCCCCTG CCCTTCTTCCCTCAGGGCCACACCATACGCAGCCGCCCCTG < 41bp 0.349479696493659 0.772655536178919 0.041089952 0.13706669 prediction 0.545311072357839 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65632493 chr11:65632497 nonsynonymous SNV 0.978 1 25 hm5C_associated_SNPs_104681 0 0 1 0 1 Ribosome 0.500231643921092 0.500231667099829 0 4.63574738596151e-08 hm5C_site_57826 DeepMRMD:0;iRNA_m5C:4.63574738596151e-08 57827 chr2 223559945 223559945 1 + C A rs150691945 223559941 + 223559921 223559961 41 GGTTTGCTTTGCCCCTGTTTCATGCCAGGGGAGTTTTTCAG GGTTTGCTTTGCCCCTGTTTCATGACAGGGGAGTTTTTCAG < 41bp 0.369770695680012 0.772651190519672 0.18372408 0.19023237 prediction 0.545302381039343 Functional Gain - MOGAT1 ENSG00000124003 CDS Human protein_coding chr2:223559941 chr2:223559945 nonsynonymous SNV 0.916 2 25 hm5C_associated_SNPs_104682 0 0 0 0 1 cytosol 0.500231643921078 0.500231643474333 0 0 hm5C_site_57827 DeepMRMD:0;iRNA_m5C:0 57828 chr3 3188150 3188150 1 + T C COAD 3188148 + 3188128 3188168 41 TTGTAGACAAACCTGGTGACCATGATCCTGAGACTTTGGAA TTGTAGACAAACCTGGTGACCACGATCCTGAGACTTTGGAA < 41bp 0.517699172926329 0.790337840302807 0.36702687 0.3268172 prediction 0.545277334752956 Functional Gain - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3188148 chr3:3188150 synonymous SNV . 0 23 hm5C_associated_SNPs_104683 0 0 1 0 2 Cytosol 0.5002316343101 0.50023164375504 0 1.88898805486559e-08 hm5C_site_57828 DeepMRMD:0;iRNA_m5C:1.88898805486559e-08 57829 chr16 30528336 30528336 1 + C A BRCA 30528332 + 30528312 30528352 41 ATCCACGACCACAACATACCCACCCTGGAGGCTGTGGTTGG ATCCACGACCACAACATACCCACCATGGAGGCTGTGGTTGG < 41bp 0.356559238190484 0.772631178518975 0.021660388 0.04165867 prediction 0.54526235703795 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30528332 chr16:30528336 nonsynonymous SNV 0.007 3 25 hm5C_associated_SNPs_104684 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643331751 0 0 hm5C_site_57829 DeepMRMD:0;iRNA_m5C:0 57830 chr1 202245610 202245610 1 + C G LUAD 202245609 + 202245589 202245629 41 TCAACCGCATCAGCCACATCCCCGACTACGCGTTCCAGAAT TCAACCGCATCAGCCACATCCGCGACTACGCGTTCCAGAAT < 41bp 0.5632324123377 0.835862005778401 0.048629016 0.4161876 prediction 0.5452591868814 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202245609 chr1:202245610 nonsynonymous SNV 0.986 3 22 hm5C_associated_SNPs_104685 0 0 0 0 1 nucleoplasm 0.500230827255221 0.500227649093882 0 0 hm5C_site_57830 DeepMRMD:0;iRNA_m5C:0 57831 chr5 134191112 134191112 1 + T G LUAD 134191110 + 134191090 134191130 41 TGATGCATGGCAGAGCAGTTCATGGGGTAGAGGAAACTAGC TGATGCATGGCAGAGCAGTTCAGGGGGTAGAGGAAACTAGC < 41bp 0.57514773072741 0.847777288925966 0.7064415 0.9338366 prediction 0.545259116397112 Functional Gain - C5orf24 ENSG00000181904 CDS Human protein_coding chr5:134191110 chr5:134191112 nonsynonymous SNV 0.953 3 23 hm5C_associated_SNPs_104686 0 0 1 0 0 chromatin 0.500232021835974 0.500231643921094 0.4547902 0 hm5C_site_57831 DeepMRMD:0.4547902;iRNA_m5C:0 57832 chr19 51628390 51628390 1 + T G LUAD 51628387 + 51628367 51628407 41 CCCTCGCATGGCTGGATTTACCCTGGCCCAGTAGTTCATGG CCCTCGCATGGCTGGATTTACCCGGGCCCAGTAGTTCATGG < 41bp 0.378112765710599 0.772611627297863 0.37190706 0.9270898 prediction 0.545223254595725 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51628387 chr19:51628390 synonymous SNV . 0 24 hm5C_associated_SNPs_104687 0 0 0 0 0 exosome 0.500231643921083 0.500231622626904 0.8541796 0 hm5C_site_57832 DeepMRMD:0.8541796;iRNA_m5C:0 57833 chr17 79423466 79423466 1 + C G UCEC 79423465 + 79423445 79423485 41 CCAGCAGAAGGAGGCTACCCCCGGGGGGCGCATCCGGGAGA CCAGCAGAAGGAGGCTACCCCGGGGGGGCGCATCCGGGAGA < 41bp 0.560049213361021 0.832657698886646 0.92712855 0.93885195 prediction 0.54521697105125 Functional Gain - BAHCC1 ENSG00000171282 CDS Human other chr17:79423465 chr17:79423466 synonymous SNV . 0 22 hm5C_associated_SNPs_104688 0 0 1 0 0 chromatin 0.500231643921093 0.500231643921093 0.0234467999999999 0 hm5C_site_57833 DeepMRMD:0.0234467999999999;iRNA_m5C:0 57834 chr3 192959289 192959289 1 + C G rs188693944 192959288 + 192959268 192959308 41 AGGACACACACAGCTGCCTCCCGGTGCGAGAAGAAGACCCC AGGACACACACAGCTGCCTCCGGGTGCGAGAAGAAGACCCC < 41bp 0.54170469435713 0.814296650497502 0.07290128 0.8904859 prediction 0.545183912280744 Functional Gain - HRASLS ENSG00000127252 CDS Human protein_coding chr3:192959288 chr3:192959289 synonymous SNV . 0 22 hm5C_associated_SNPs_104689 0 0 0 0 1 Cytosol 0.500231638153746 0.500231643941892 0.7809718 1.15762914809636e-08 hm5C_site_57834 DeepMRMD:0.7809718;iRNA_m5C:1.15762914809636e-08 57835 chr1 1132966 1132966 1 + C A rs2274790 1132962 + 1132942 1132982 41 GTGCAGCCTCCGCCGCTGGCCGCCCCTGCCCACCCGCCAGG GTGCAGCCTCCGCCGCTGGCCGCCACTGCCCACCCGCCAGG < 41bp 0.621797657660844 0.894367170030097 0.18055427 0.21835771 prediction 0.545139024738506 Functional Gain - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1132962 chr1:1132966 synonymous SNV . 0 25 hm5C_associated_SNPs_104690 0 0 0 0 0 exosome 0.500231643921683 0.500231650428807 0 1.30142485676998e-08 hm5C_site_57835 DeepMRMD:0;iRNA_m5C:1.30142485676998e-08 57836 chr7 141803169 141803169 1 + T A SKCM 141803165 + 141803145 141803185 41 TCTGGGGAGTGGGCAGTGTCCCCGTTACCAGTGTCAGCATC TCTGGGGAGTGGGCAGTGTCCCCGATACCAGTGTCAGCATC < 41bp 0.468541692459227 0.772547663336645 0.2412698 0.2789138 prediction 0.545095326673291 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141803165 chr7:141803169 nonsynonymous SNV 0.092 1 25 hm5C_associated_SNPs_104691 0 0 0 0 1 Cytosol 0.500231643921181 0.500231643928796 0 1.52284851395734e-11 hm5C_site_57836 DeepMRMD:0;iRNA_m5C:1.52284851395734e-11 57837 chr11 5372935 5372935 1 + T A LUSC 5372931 + 5372911 5372951 41 CTATTTCTTAGCTATGTTGGCAGCTACAGACCTCGGAGTGA CTATTTCTTAGCTATGTTGGCAGCAACAGACCTCGGAGTGA < 41bp 0.542719469803541 0.815263289940642 0.18957666 0.13073567 prediction 0.545087640274203 Functional Gain - OR51B6 ENSG00000176239 CDS Human protein_coding chr11:5372931 chr11:5372935 synonymous SNV . 0 25 hm5C_associated_SNPs_104692 0 0 0 0 0 unknown 0.500231643988029 0.50023164458496 0 1.19386145414069e-09 hm5C_site_57837 DeepMRMD:0;iRNA_m5C:1.19386145414069e-09 57838 chr16 3314210 3314210 1 + C A rs532231533 3314206 + 3314186 3314226 41 CCCGGCGCCCCAAAGGGAAGCGGCCTGGGGGAGGAGACGTG CCCGGCGCCCCAAAGGGAAGCGGCATGGGGGAGGAGACGTG < 41bp 0.408736558938958 0.772521865901766 0.7638749 0.8589767 prediction 0.545043731803533 Functional Gain - LINC00921 ENSG00000006194 intronic Human protein_coding chr16:3314206 chr16:3314210 . . 0 25 hm5C_associated_SNPs_104693 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.1902036 0 hm5C_site_57838 DeepMRMD:0.1902036;iRNA_m5C:0 57839 chr7 86781963 86781963 1 + C G rs542890455 86781962 + 86781942 86781982 41 CCCTTGCTGCCCGCTAGCTCCCGCCGGCTGGCGCAAGCTGT CCCTTGCTGCCCGCTAGCTCCGGCCGGCTGGCGCAAGCTGT < 41bp 0.51043690464557 0.782949269162535 0.4379776 0.6020881 prediction 0.545024729033929 Functional Gain - DMTF1 ENSG00000135164 UTR5 Human protein_coding chr7:86781962 chr7:86781963 . . 0 22 hm5C_associated_SNPs_104694 0 0 1 0 0 Nucleus 0.500231646368582 0.500231643921092 0.2041762 0 hm5C_site_57839 DeepMRMD:0.2041762;iRNA_m5C:0 57840 chr16 86602036 86602036 1 + C G rs74670039 86602035 + 86602015 86602055 41 CTCGGACCACCCGAGCGGCCCCACGTCGCCCCTGAGCGCTC CTCGGACCACCCGAGCGGCCCGACGTCGCCCCTGAGCGCTC < 41bp 0.482396250749704 0.77251190706376 0.046336323 0.17247725 prediction 0.545023814127519 Functional Gain - FOXC2 ENSG00000176692 CDS Human protein_coding chr16:86602035 chr16:86602036 synonymous SNV . 0 22 hm5C_associated_SNPs_104695 0 0 0 0 0 exosome 0.50023165619895 0.50025248198358 0 4.16515692598374e-05 hm5C_site_57840 DeepMRMD:0;iRNA_m5C:4.16515692598374e-05 57841 chr21 47550276 47550276 1 + C G rs183389132 47550275 + 47550255 47550295 41 GGAGCGGCAGGGATCACCATCCAAAGGGAGCGGCCCCCACG GGAGCGGCAGGGATCACCATCGAAAGGGAGCGGCCCCCACG < 41bp 0.561396735082915 0.833907972292573 0.45287052 0.87150127 prediction 0.545022474419314 Functional Gain - COL6A2 ENSG00000142173 intronic Human protein_coding chr21:47550275 chr21:47550276 . . 0 22 hm5C_associated_SNPs_104696 0 0 0 0 0 Cytosol 0.500231643920482 0.500231643920339 0.74300254 0 hm5C_site_57841 DeepMRMD:0.74300254;iRNA_m5C:0 57842 chr7 144060378 144060378 1 + C A rs115568093 144060374 + 144060354 144060394 41 GGCTCTGAAAGTGGGACTATCAGGCAGGGGGAAGAGCTGCC GGCTCTGAAAGTGGGACTATCAGGAAGGGGGAAGAGCTGCC < 41bp 0.633196460413718 0.905702135570992 0.77112514 0.8940846 prediction 0.545011350314548 Functional Gain - ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144060374 chr7:144060378 nonsynonymous SNV 0.126 1 25 hm5C_associated_SNPs_104697 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.24591892 0 hm5C_site_57842 DeepMRMD:0.24591892;iRNA_m5C:0 57843 chr19 50961863 50961863 1 + C G BLCA 50961859 + 50961839 50961879 41 TCCAGCCGAGGAATGGGTCCCTGCCAACACCGAGCCCGTGG TCCAGCCGAGGAATGGGTCCCTGCGAACACCGAGCCCGTGG < 41bp 0.48799328500268 0.772500607575761 0.041778862 0.10830459 prediction 0.545001215151523 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50961859 chr19:50961863 synonymous SNV . 0 25 hm5C_associated_SNPs_104698 0 0 0 0 1 exosome 0.500231643921092 0.500231643929537 0 1.68896008290176e-11 hm5C_site_57843 DeepMRMD:0;iRNA_m5C:1.68896008290176e-11 57844 chr11 123900714 123900714 1 + C A DLBC 123900710 + 123900690 123900730 41 CGCTACCTGGCCATCAGTTACCCGCTCAGGTACACCAGCAT CGCTACCTGGCCATCAGTTACCCGATCAGGTACACCAGCAT < 41bp 0.383185611208579 0.772499005409618 0.04823202 0.1613706 prediction 0.544998010819236 Functional Gain - OR10G8 ENSG00000234560 CDS Human protein_coding chr11:123900710 chr11:123900714 nonsynonymous SNV 0.917 3 25 hm5C_associated_SNPs_104699 0 0 0 0 0 unknown 0.500231643921807 0.500231643921069 0 0 hm5C_site_57844 DeepMRMD:0;iRNA_m5C:0 57845 chr1 238090364 238090364 1 + T A LUAD 238090360 + 238090340 238090380 41 ATTGAGCATGGCATCGTCACCAACTGGGACGACATGGAGAA ATTGAGCATGGCATCGTCACCAACAGGGACGACATGGAGAA < 41bp 0.473357860933451 0.772495629753674 0.1775482 0.15474743 prediction 0.544991259507348 Functional Gain - LOC100130331 ENSG00000237250;ENSG00000243781 ncRNA_exonic Human other chr1:238090360 chr1:238090364 . . 0 25 hm5C_associated_SNPs_104700 0 0 0 1 0 unknown 0.500231643996942 0.50023165018055 0 1.23672156959742e-08 hm5C_site_57845 DeepMRMD:0;iRNA_m5C:1.23672156959742e-08 57846 chr19 45130767 45130767 1 + C A UCEC 45130763 + 45130743 45130783 41 GAGCCCATGGAGCCAGACCCCACTCTGTCCCTGTCAGGAGG GAGCCCATGGAGCCAGACCCCACTATGTCCCTGTCAGGAGG < 41bp 0.364535126852554 0.772494505222333 0.08457911 0.047102958 prediction 0.544989010444666 Functional Gain - IGSF23 ENSG00000216588 CDS Human protein_coding chr19:45130763 chr19:45130767 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_104701 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_57846 DeepMRMD:0;iRNA_m5C:0 57847 chr2 3642508 3642508 1 + C A rs575365824 3642504 + 3642484 3642524 41 CCTGCCCCCCACCCCAAAGCCGGCCTCAGGGAGTTCCAGGC CCTGCCCCCCACCCCAAAGCCGGCATCAGGGAGTTCCAGGC < 41bp 0.608185181369786 0.880674497895645 0.5690474 0.5398166 prediction 0.544978633051717 Functional Gain - COLEC11 ENSG00000118004 upstream Human protein_coding chr2:3642504 chr2:3642508 . . 0 25 hm5C_associated_SNPs_104702 0 0 0 0 0 membrane 0.500231643921091 0.500231643921092 0 2.22044604925031e-15 hm5C_site_57847 DeepMRMD:0;iRNA_m5C:2.22044604925031e-15 57848 chr1 15988085 15988085 1 + C G LIHC 15988084 + 15988064 15988104 41 TCCACCATTGATTTTTCCTGCCACAGATATTGACCGCATTC TCCACCATTGATTTTTCCTGCGACAGATATTGACCGCATTC < 41bp 0.485578799376454 0.772483647208792 0.10563576 0.23616049 prediction 0.544967294417584 Functional Gain - RSC1A1 ENSG00000215695 CDS Human protein_coding chr1:15988084 chr1:15988085 synonymous SNV . 0 22 hm5C_associated_SNPs_104703 0 0 1 0 0 exosome 0.500231643829253 0.500231643913633 0 1.68759672902752e-10 hm5C_site_57848 DeepMRMD:0;iRNA_m5C:1.68759672902752e-10 57849 chr17 16120706 16120706 1 + T A STAD 16120702 + 16120682 16120722 41 GCGCACCCTGACGATGAAGCCATGTTTTTTGCTCCCACAGT GCGCACCCTGACGATGAAGCCATGATTTTTGCTCCCACAGT < 41bp 0.473250551080519 0.772470766448494 0.17123234 0.29385385 prediction 0.544941532896988 Functional Gain - PIGL ENSG00000108474 CDS Human protein_coding chr17:16120702 chr17:16120706 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104704 0 0 1 0 1 chromatin 0.500255593551078 0.500231730383525 0 0 hm5C_site_57849 DeepMRMD:0;iRNA_m5C:0 57850 chr16 1706740 1706740 1 + C G rs533832759 1706739 + 1706719 1706759 41 GACAGCCTGCCGCCAGGCCCCCGAAGGAGGTCCCCGCCAGC GACAGCCTGCCGCCAGGCCCCGGAAGGAGGTCCCCGCCAGC < 41bp 0.559154608639792 0.831599278498961 0.34019622 0.9152218 prediction 0.544889339718338 Functional Gain - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1706739 chr16:1706740 nonsynonymous SNV 0.143 0 22 hm5C_associated_SNPs_104705 0 0 0 0 1 chromatin 0.500231643768653 0.500231643921092 0.8304436 3.04878122747709e-10 hm5C_site_57850 DeepMRMD:0.8304436;iRNA_m5C:3.04878122747709e-10 57851 chr22 32464528 32464528 1 + C A SARC 32464524 + 32464504 32464544 41 CTGAGGAAGCGGTTTGGAGGCCAGCGGATCCAGGTCTACCT CTGAGGAAGCGGTTTGGAGGCCAGAGGATCCAGGTCTACCT < 41bp 0.373363380835625 0.772431108477502 0.9059534 0.92727005 prediction 0.544862216955003 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32464524 chr22:32464528 synonymous SNV . 0 25 hm5C_associated_SNPs_104706 0 0 0 0 2 Nucleus 0.500231643908626 0.500231643921075 0.0426332999999999 2.48989717732684e-11 hm5C_site_57851 DeepMRMD:0.0426332999999999;iRNA_m5C:2.48989717732684e-11 57852 chr17 73267533 73267533 1 + C A rs571418032 73267529 + 73267509 73267549 41 CCGGGCCCACGCCGGACCCGCCGGCACCTCGATCTTGCGCG CCGGGCCCACGCCGGACCCGCCGGAACCTCGATCTTGCGCG < 41bp 0.599697322357875 0.872125218006433 0.20452109 0.37404573 prediction 0.544855791297116 Functional Gain - LOC100287042 ENSG00000263843 ncRNA_exonic Human antisense chr17:73267529 chr17:73267533 . . 0 25 hm5C_associated_SNPs_104707 0 0 1 0 0 unknown 0.500455446308075 0.500231120828816 0 0 hm5C_site_57852 DeepMRMD:0;iRNA_m5C:0 57853 chr1 1168115 1168115 1 + C A rs142820961 1168111 + 1168091 1168131 41 GAGCACGTGGCCTTCGAGTTCGTGCTCAAGGCGGACGACGA GAGCACGTGGCCTTCGAGTTCGTGATCAAGGCGGACGACGA < 41bp 0.613967353326842 0.886385795806998 0.0676108 0.10239148 prediction 0.544836884960312 Functional Gain - B3GALT6 ENSG00000176022 CDS Human protein_coding chr1:1168111 chr1:1168115 nonsynonymous SNV 0.988 1 25 hm5C_associated_SNPs_104708 1 0 1 0 0 Ribosome 0.500231643921102 0.50023164387005 0 0 hm5C_site_57853 DeepMRMD:0;iRNA_m5C:0 not specified not specified 57854 chr11 69063136 69063136 1 + C G rs7117236 69063135 + 69063115 69063155 41 CTTCGTGGAGGGCTCCAAAGCCGGCAGATCCCGGGGCCGCC CTTCGTGGAGGGCTCCAAAGCGGGCAGATCCCGGGGCCGCC < 41bp 0.559829125319805 0.83224244597776 0.8953482 0.91415215 prediction 0.54482664131591 Functional Gain - MYEOV ENSG00000172927 CDS Human protein_coding chr11:69063135 chr11:69063136 synonymous SNV . 0 22 hm5C_associated_SNPs_104709 0 0 0 0 1 Ribosome 0.500231643884336 0.500231643824748 0.0376079 0 hm5C_site_57854 DeepMRMD:0.0376079;iRNA_m5C:0 Tonsillectomy 57855 chr11 55873120 55873120 1 + T G LUSC 55873118 + 55873098 55873138 41 AACACCGAAATCCTGATATTCATTATTGTTGGTTCCACCCT AACACCGAAATCCTGATATTCAGTATTGTTGGTTCCACCCT < 41bp 0.455343804120431 0.772411524369491 0.063028544 0.17737201 prediction 0.544823048738982 Functional Gain - OR8H2 ENSG00000181767 CDS Human protein_coding chr11:55873118 chr11:55873120 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_104710 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_57855 DeepMRMD:0;iRNA_m5C:0 57856 chr11 60971667 60971667 1 + C A LUSC 60971663 + 60971643 60971683 41 TTCCTGAAGAAGCACAACCTCAACCCAGCCAGAAAGTACTT TTCCTGAAGAAGCACAACCTCAACACAGCCAGAAAGTACTT < 41bp 0.352112521633032 0.772402004457934 0.08224478 0.035478443 prediction 0.544804008915867 Functional Gain - PGA3 ENSG00000229859 CDS Human protein_coding chr11:60971663 chr11:60971667 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_104711 0 0 0 0 1 Endoplasmic reticulum 0.500231643921121 0.500231618432435 0 0 hm5C_site_57856 DeepMRMD:0;iRNA_m5C:0 57857 chr7 150069612 150069612 1 + G T LUSC 150069616 - 150069596 150069636 41 ACTCCTCGCAGGCGAAGGGCCGCTCGCCGGAGTGCACGCGC ACTCCTCGCAGGCGAAGGGCCGCTAGCCGGAGTGCACGCGC < 41bp 0.612910675049544 0.885307192367946 0.13040346 0.11679906 prediction 0.544793034636805 Functional Gain - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150069616 chr7:150069612 stopgain 0.957 0 25 hm5C_associated_SNPs_104712 0 0 0 0 0 Endoplasmic reticulum 0.500231650612082 0.50023164401559 0 0 hm5C_site_57857 DeepMRMD:0;iRNA_m5C:0 57858 chr12 55968676 55968676 1 + C G rs56012703 55968675 + 55968655 55968695 41 GCTATTATACCAACAATCACCCTGATGAGTCAGCAGGACTT GCTATTATACCAACAATCACCGTGATGAGTCAGCAGGACTT < 41bp 0.481488668381768 0.772393368917373 0.046150625 0.22842136 prediction 0.544786737834747 Functional Gain - OR2AP1 ENSG00000179615 CDS Human protein_coding chr12:55968675 chr12:55968676 nonsynonymous SNV 0.288 0 22 hm5C_associated_SNPs_104713 0 0 0 0 0 unknown 0.500231643837589 0.500231637332619 0 0 hm5C_site_57858 DeepMRMD:0;iRNA_m5C:0 57859 chr7 100799899 100799899 1 + C G LUAD 100799895 + 100799875 100799915 41 ATGCGGTTCATGCTATTATTCAGCCGGCAGGGAAAACTGCG ATGCGGTTCATGCTATTATTCAGCGGGCAGGGAAAACTGCG < 41bp 0.486697840465544 0.772393072131782 0.76798177 0.9243554 prediction 0.544786144263563 Functional Gain - AP1S1 ENSG00000106367 CDS Human protein_coding chr7:100799895 chr7:100799899 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104714 0 0 1 0 1 Ribosome 0.500231643922743 0.500231643911899 0.31274726 0 hm5C_site_57859 DeepMRMD:0.31274726;iRNA_m5C:0 57860 chr3 26666799 26666799 1 + C G rs61731245 26666798 + 26666778 26666818 41 CAGGGCTCCCGGGAGAAATCCCGAGGTCAGTCCCTCCCATT CAGGGCTCCCGGGAGAAATCCGGAGGTCAGTCCCTCCCATT < 41bp 0.489320784456725 0.772390097450257 0.9296918 0.93901664 prediction 0.544780194900514 Functional Gain - LRRC3B ENSG00000179796 UTR5 Human protein_coding chr3:26666798 chr3:26666799 . . 0 22 hm5C_associated_SNPs_104715 0 0 0 0 0 exosome 0.500231630929478 0.500231643899386 0.01864968 2.59398178492631e-08 hm5C_site_57860 DeepMRMD:0.01864968;iRNA_m5C:2.59398178492631e-08 57861 chr7 1131728 1131728 1 + C A LGG 1131724 + 1131704 1131744 41 ATTGAGGTGTTCAACCTGCACGAGCGGTACTACGACATCGC ATTGAGGTGTTCAACCTGCACGAGAGGTACTACGACATCGC < 41bp 0.635092032452468 0.907473418237386 0.39144623 0.8658594 prediction 0.544762771569836 Functional Gain - GPER1 ENSG00000164850 CDS Human protein_coding chr7:1131724 chr7:1131728 synonymous SNV . 0 25 hm5C_associated_SNPs_104716 0 0 0 0 0 Cytosol 0.500231643913979 0.500231644200699 0.7317188 5.73440628315325e-10 hm5C_site_57861 DeepMRMD:0.7317188;iRNA_m5C:5.73440628315325e-10 57862 chr2 27887052 27887052 1 + C G SKCM 27887051 + 27887031 27887071 41 CCCCCGACAGCGGTTTCTTCCCCTGGCGGTCCAGCCCGGGC CCCCCGACAGCGGTTTCTTCCGCTGGCGGTCCAGCCCGGGC < 41bp 0.456825646099282 0.772377144664344 0.029978573 0.104595155 prediction 0.544754289328687 Functional Gain - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27887051 chr2:27887052 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_104717 0 0 1 0 0 nucleoplasm 0.500231643921092 0.50023164391927 0 0 hm5C_site_57862 DeepMRMD:0;iRNA_m5C:0 57863 chr9 72785543 72785543 1 + G C STAD 72785544 - 72785524 72785564 41 CACGTGGCATAACTCACCTACCCCAGTAGTGTGATCTCCCT CACGTGGCATAACTCACCTACGCCAGTAGTGTGATCTCCCT < 41bp 0.467861108602973 0.772371064923348 0.073880106 0.111213654 prediction 0.544742129846696 Functional Gain - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72785544 chr9:72785543 synonymous SNV . 0 22 hm5C_associated_SNPs_104718 0 0 0 0 0 nucleus 0.500231643924611 0.500231646473623 0 5.09802355885824e-09 hm5C_site_57863 DeepMRMD:0;iRNA_m5C:5.09802355885824e-09 57864 chr20 46589586 46589586 1 + C G rs376566512 46589585 + 46589565 46589605 41 CCAAGGGGGCTCACCCTGTCCCAGGAGGTTCTGCCTGATCC CCAAGGGGGCTCACCCTGTCCGAGGAGGTTCTGCCTGATCC < 41bp 0.522290096222028 0.794659868919145 0.21822864 0.7729447 prediction 0.544739545394234 Functional Gain - SULF2;LINC01522 ENSG00000228503;ENSG00000237423 intergenic Human other chr20:46589585 chr20:46589586 . . 0 22 hm5C_associated_SNPs_104719 0 0 0 0 0 unknown 0.500231643921715 0.500231643921092 0.5458894 0 hm5C_site_57864 DeepMRMD:0.5458894;iRNA_m5C:0 57865 chr5 6583526 6583526 1 + C G rs555016 6583525 + 6583505 6583545 41 CCTTTCTGCAGCTCCTCCACCCGCGCGCTGTCGGCTCCGGG CCTTTCTGCAGCTCCTCCACCGGCGCGCTGTCGGCTCCGGG < 41bp 0.480728137112058 0.772361510097471 0.55104864 0.9404017 prediction 0.544723020194941 Functional Gain - LINC01018 ENSG00000250056 ncRNA_exonic Human lincRNA chr5:6583525 chr5:6583526 . . 0 22 hm5C_associated_SNPs_104720 0 0 0 0 0 unknown 0.500231643921071 0.500231643921088 0.77870612 3.39728245535298e-14 hm5C_site_57865 DeepMRMD:0.77870612;iRNA_m5C:3.39728245535298e-14 57866 chr6 150285204 150285204 1 + C A COAD 150285200 + 150285180 150285220 41 TCTACAATGGCAGCGGCCGCCAGCCCCGCGTTCCTTCTGTG TCTACAATGGCAGCGGCCGCCAGCACCGCGTTCCTTCTGTG < 41bp 0.623054466028103 0.895414063256714 0.81744397 0.8005003 prediction 0.544719194457223 Functional Gain - ULBP1 ENSG00000111981 CDS Human protein_coding chr6:150285200 chr6:150285204 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104721 0 0 0 0 1 Nucleus 0.500231643919976 0.500231643921093 0 2.23376872554581e-12 hm5C_site_57866 DeepMRMD:0;iRNA_m5C:2.23376872554581e-12 57867 chr18 43204711 43204711 1 + C A HNSC 43204707 + 43204687 43204727 41 CTCTACGAGGCAGAGTTTACCAGCCCGAGCTGGCCCTCGAC CTCTACGAGGCAGAGTTTACCAGCACGAGCTGGCCCTCGAC < 41bp 0.379777282460797 0.772356442302221 0.82757056 0.6709887 prediction 0.544712884604442 Functional Gain - SLC14A2 ENSG00000132874 CDS Human protein_coding chr18:43204707 chr18:43204711 nonsynonymous SNV 0.037 0 25 hm5C_associated_SNPs_104722 0 0 0 0 1 Nucleus 0.500231629311601 0.500231632116517 0 5.60983259845216e-09 hm5C_site_57867 DeepMRMD:0;iRNA_m5C:5.60983259845216e-09 57868 chr6 43100368 43100368 1 + T A OV 43100364 + 43100344 43100384 41 GAAAGTGATGCTGGTGTCTACACCTGCCACGCGGCCAACCT GAAAGTGATGCTGGTGTCTACACCAGCCACGCGGCCAACCT < 41bp 0.444587840231171 0.772354458499552 0.14419141 0.41865766 prediction 0.544708916999104 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43100364 chr6:43100368 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_104723 0 0 1 0 1 Endoplasmic reticulum 0.500231643952214 0.500231643172314 0 0 hm5C_site_57868 DeepMRMD:0;iRNA_m5C:0 57869 chr2 71160076 71160076 1 + T G rs200923058 71160073 + 71160053 71160093 41 CCTAGCCTCCTGGCGCTGACCCCTAGCCTGCCAGGCCTACC CCTAGCCTCCTGGCGCTGACCCCGAGCCTGCCAGGCCTACC < 41bp 0.395129520942501 0.77233689581127 0.18669125 0.4051598 prediction 0.544673791622539 Functional Gain - VAX2 ENSG00000116035 CDS Human protein_coding chr2:71160073 chr2:71160076 synonymous SNV . 0 24 hm5C_associated_SNPs_104724 0 0 0 0 0 exosome 0.500231643921093 0.500231644048626 0 2.55066412435667e-10 hm5C_site_57869 DeepMRMD:0;iRNA_m5C:2.55066412435667e-10 57870 chr19 11486212 11486212 1 + C A UCEC 11486208 + 11486188 11486228 41 GAAGATCCGCTTCCAGTACCCACCCTCAACCCGAGAGCTTT GAAGATCCGCTTCCAGTACCCACCATCAACCCGAGAGCTTT < 41bp 0.372785516723109 0.772330432368444 0.029924512 0.041459084 prediction 0.544660864736888 Functional Gain - SWSAP1 ENSG00000173928 CDS Human protein_coding chr19:11486208 chr19:11486212 synonymous SNV . 0 25 hm5C_associated_SNPs_104725 0 0 1 0 1 exosome 0.500231643921092 0.500231643921008 0 0 hm5C_site_57870 DeepMRMD:0;iRNA_m5C:0 57871 chr1 1407165 1407165 1 + C G rs140699979 1407164 + 1407144 1407184 41 TGTTTCGCCTGCGCAGTGGTCCTGGCCACCGGCTCGCGGCG TGTTTCGCCTGCGCAGTGGTCGTGGCCACCGGCTCGCGGCG < 41bp 0.477425942399118 0.772320696736685 0.70514673 0.9034955 prediction 0.544641393473371 Functional Gain - ATAD3B ENSG00000160072 UTR5 Human protein_coding chr1:1407164 chr1:1407165 . . 0 22 hm5C_associated_SNPs_104726 0 0 1 0 0 Ribosome 0.500231667195548 0.500233258544354 0.39669754 3.18269761145906e-06 hm5C_site_57871 DeepMRMD:0.39669754;iRNA_m5C:3.18269761145906e-06 57872 chr4 189068235 189068235 1 + T A BRCA 189068231 + 189068211 189068251 41 AAAGGGGAATCTCCCCAAGCCACCTGGGGACCTGTTCTCAC AAAGGGGAATCTCCCCAAGCCACCAGGGGACCTGTTCTCAC < 41bp 0.584737880964434 0.857048813695768 0.18772924 0.2472158 prediction 0.544621865462667 Functional Gain - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189068231 chr4:189068235 synonymous SNV . 0 25 hm5C_associated_SNPs_104727 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_57872 DeepMRMD:0;iRNA_m5C:0 57873 chr7 141414139 141414139 1 + T C LIHC 141414137 + 141414117 141414157 41 GCTCTGGTCAATATTAATCCCTTCACTCCAGAGTCCTATAA GCTCTGGTCAATATTAATCCCTCCACTCCAGAGTCCTATAA < 41bp 0.53742205532892 0.809727627021764 0.009412944 0.93813866 prediction 0.544611143385688 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141414137 chr7:141414139 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_104728 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.87627732 0 hm5C_site_57873 DeepMRMD:0.87627732;iRNA_m5C:0 57874 chr11 64885138 64885138 1 + C G rs115738452 64885137 + 64885117 64885157 41 CGGCTCCATGGCAACTGGCACCGCGATCTACCTGCGAACGC CGGCTCCATGGCAACTGGCACGGCGATCTACCTGCGAACGC < 41bp 0.528483243431836 0.800785856950495 0.35496023 0.8222449 prediction 0.544605227037317 Functional Gain - ZNHIT2 ENSG00000174276 UTR5 Human protein_coding chr11:64885137 chr11:64885138 . . 0 22 hm5C_associated_SNPs_104729 0 0 0 0 0 Ribosome 0.500231644070009 0.500231643927752 0.6444898 0 hm5C_site_57874 DeepMRMD:0.6444898;iRNA_m5C:0 57875 chr12 58112867 58112867 1 + T C LIHC 58112865 + 58112845 58112885 41 ACATCCACTCTCAACAAACTCATCAAAAGACTGGAGGAAAA ACATCCACTCTCAACAAACTCACCAAAAGACTGGAGGAAAA < 41bp 0.511005559471647 0.783304072413717 0.44227272 0.33662465 prediction 0.544597025884138 Functional Gain - OS9 ENSG00000135506 CDS Human protein_coding chr12:58112865 chr12:58112867 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_104730 0 0 1 0 2 Nucleus 0.500231643801445 0.50023164390768 0 2.12470263605269e-10 hm5C_site_57875 DeepMRMD:0;iRNA_m5C:2.12470263605269e-10 57876 chr1 84876577 84876577 1 + T G UCEC 84876574 + 84876554 84876594 41 GGCTGATTCATTCCATCCCTCAGTTTCCTCCAATTCCGGAA GGCTGATTCATTCCATCCCTCAGGTTCCTCCAATTCCGGAA < 41bp 0.376849830525748 0.7722973315818 0.025996834 0.14219496 prediction 0.5445946631636 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84876574 chr1:84876577 nonsynonymous SNV 0.720 3 24 hm5C_associated_SNPs_104731 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57876 DeepMRMD:0;iRNA_m5C:0 57877 chr2 220379560 220379560 1 + C A rs3731909 220379556 + 220379536 220379576 41 CGGGGCTGTTGCCCCTGGAGCAGCCCCCCGAGACCTGGCCA CGGGGCTGTTGCCCCTGGAGCAGCACCCCGAGACCTGGCCA < 41bp 0.372132758335864 0.772286250009129 0.30313432 0.3378545 prediction 0.544572500018258 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220379556 chr2:220379560 synonymous SNV . 0 25 hm5C_associated_SNPs_104732 0 0 1 0 0 chromatin 0.500231643921085 0.50023164392109 0 1.02140518265514e-14 hm5C_site_57877 DeepMRMD:0;iRNA_m5C:1.02140518265514e-14 57878 chr15 40764195 40764195 1 + C G HNSC 40764194 + 40764174 40764214 41 AGGCGACGATGTCACATTCCCCGAGTTCCTGAGATACCTGG AGGCGACGATGTCACATTCCCGGAGTTCCTGAGATACCTGG < 41bp 0.468147858417487 0.772271914897545 0.26285887 0.9051993 prediction 0.544543829795089 Functional Gain - CHST14 ENSG00000169105 CDS Human protein_coding chr15:40764194 chr15:40764195 synonymous SNV . 0 22 hm5C_associated_SNPs_104733 0 0 0 0 0 exosome 0.500231643921093 0.500231643921087 0.8103986 0 hm5C_site_57878 DeepMRMD:0.8103986;iRNA_m5C:0 57879 chr9 133540056 133540056 1 + C A rs570756044 133540052 + 133540032 133540072 41 GGGCCGCCCATGATGGGCTCCGTGCTCCCGGCTGAGGCCCT GGGCCGCCCATGATGGGCTCCGTGATCCCGGCTGAGGCCCT < 41bp 0.409606100842955 0.77226190703124 0.31430325 0.3392041 prediction 0.544523814062481 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133540052 chr9:133540056 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_104734 0 0 0 0 0 exosome 0.50023164400033 0.500231643919681 0 0 hm5C_site_57879 DeepMRMD:0;iRNA_m5C:0 57880 chr11 55433015 55433015 1 + T A LUSC 55433011 + 55432991 55433031 41 GCCTATGACCGCTACGTGGCCATCTGTAAGCCCCTGCACTA GCCTATGACCGCTACGTGGCCATCAGTAAGCCCCTGCACTA < 41bp 0.535839651697314 0.808095680349125 0.15407851 0.10114819 prediction 0.544512057303622 Functional Gain - OR4C6 ENSG00000181903 CDS Human protein_coding chr11:55433011 chr11:55433015 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_104735 0 0 0 0 0 unknown 0.50023164392111 0.50023164392196 0 1.70086167372574e-12 hm5C_site_57880 DeepMRMD:0;iRNA_m5C:1.70086167372574e-12 57881 chr14 20296434 20296434 1 + C A rs147634932 20296430 + 20296410 20296450 41 ACAAGGTGGTTTCTCTCTTCCACACAGTGATTTTTCCTTTG ACAAGGTGGTTTCTCTCTTCCACAAAGTGATTTTTCCTTTG < 41bp 0.382204394581891 0.772252370256585 0.030520052 0.09445089 prediction 0.54450474051317 Functional Gain - OR4N2 ENSG00000176294 CDS Human protein_coding chr14:20296430 chr14:20296434 nonsynonymous SNV 0.987 4 25 hm5C_associated_SNPs_104736 0 0 0 0 0 unknown 0.500231523253413 0.500231227818542 0 0 hm5C_site_57881 DeepMRMD:0;iRNA_m5C:0 57882 chr16 55360337 55360337 1 + C G BLCA 55360333 + 55360313 55360353 41 GGCATCAGGCTCCACCCCAGCGCCCGCTCTCTGCTGCGCAC GGCATCAGGCTCCACCCCAGCGCCGGCTCTCTGCTGCGCAC < 41bp 0.516426092247605 0.788660507997032 0.061787933 0.13250387 prediction 0.544468831498855 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360333 chr16:55360337 synonymous SNV . 0 25 hm5C_associated_SNPs_104737 0 0 0 0 1 exosome 0.50023164042432 0.500231655088463 0 2.93282855778898e-08 hm5C_site_57882 DeepMRMD:0;iRNA_m5C:2.93282855778898e-08 57883 chrX 18646665 18646665 1 + C A LUAD 18646661 + 18646641 18646681 41 TCTGGCGGGAGCAGCAACATCCGGCAGGAACCCGCACCGAA TCTGGCGGGAGCAGCAACATCCGGAAGGAACCCGCACCGAA < 41bp 0.641472218981449 0.913704160398663 0.8250505 0.9088417 prediction 0.544463882834426 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18646661 chrX:18646665 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_104738 0 0 0 0 1 Endoplasmic reticulum 0.500231656642832 0.500231644420712 0.1675824 0 hm5C_site_57883 DeepMRMD:0.1675824;iRNA_m5C:0 57884 chr19 15807890 15807890 1 + C A LUSC 15807886 + 15807866 15807906 41 GTGGAGCCCCTGAATGTAAGCTTGCAGTGACTTTCTGACCC GTGGAGCCCCTGAATGTAAGCTTGAAGTGACTTTCTGACCC < 41bp 0.378898346774202 0.772217732652368 0.18528745 0.12296417 prediction 0.544435465304736 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15807886 chr19:15807890 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_104739 0 0 1 0 0 exosome 0.500231643921014 0.500231643921092 0 1.54765089632747e-13 hm5C_site_57884 DeepMRMD:0;iRNA_m5C:1.54765089632747e-13 57885 chr1 151131536 151131536 1 + C G rs76172995 151131535 + 151131515 151131555 41 TGTTCTGGCTGGCCTGCTGACCGAGTGCCGGGATGTGCTGC TGTTCTGGCTGGCCTGCTGACGGAGTGCCGGGATGTGCTGC < 41bp 0.465567352649051 0.7722123570346 0.90069664 0.9351516 prediction 0.544424714069199 Functional Gain - TNFAIP8L2 ENSG00000163154 CDS Human protein_coding chr1:151131535 chr1:151131536 synonymous SNV . 0 22 hm5C_associated_SNPs_104740 0 0 0 0 0 Cytosol 0.50023164335398 0.500231643921093 0.0689099199999998 1.13422560232834e-09 hm5C_site_57885 DeepMRMD:0.0689099199999998;iRNA_m5C:1.13422560232834e-09 57886 chr6 155578174 155578174 1 + G T SARC 155578178 - 155578158 155578198 41 TAAACTCTGGACACTGAATTCTCGCTCTAGAACAGAATTTA TAAACTCTGGACACTGAATTCTCGATCTAGAACAGAATTTA < 41bp 0.63359634949822 0.905783941169138 0.050549358 0.26567817 prediction 0.544375183341834 Functional Gain - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155578178 chr6:155578174 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_104741 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643885351 0 0 hm5C_site_57886 DeepMRMD:0;iRNA_m5C:0 57887 chr5 79950566 79950566 1 + C A LUAD 79950562 + 79950542 79950582 41 CTGCCATGTCTCGCCGGAAGCCTGCGTCGGGCGGCCTCGCT CTGCCATGTCTCGCCGGAAGCCTGAGTCGGGCGGCCTCGCT < 41bp 0.433316439347212 0.772181551441392 0.28928837 0.907362 prediction 0.544363102882785 Functional Gain - MSH3 ENSG00000113318 CDS Human protein_coding chr5:79950562 chr5:79950566 nonsynonymous SNV 0.286 1 25 hm5C_associated_SNPs_104742 0 0 1 0 0 chromatin 0.500232850025184 0.500231643927048 0.814724 0 hm5C_site_57887 DeepMRMD:0.814724;iRNA_m5C:0 57888 chr19 34263138 34263138 1 + C A LUSC 34263134 + 34263114 34263154 41 ACGCTGGATGGCCGCTGGGTCAGCCTGCACCGGAGCCAGCA ACGCTGGATGGCCGCTGGGTCAGCATGCACCGGAGCCAGCA < 41bp 0.629218598579022 0.901383420850115 0.077180475 0.050286233 prediction 0.544329644542186 Functional Gain - CHST8 ENSG00000124302 CDS Human protein_coding chr19:34263134 chr19:34263138 nonsynonymous SNV 0.977 2 25 hm5C_associated_SNPs_104743 0 0 1 0 0 exosome 0.500231643921092 0.500231643921133 0 8.14903700074865e-14 hm5C_site_57888 DeepMRMD:0;iRNA_m5C:8.14903700074865e-14 57889 chr2 133403010 133403010 1 + G T CESC 133403014 - 133402994 133403034 41 TCAGTTCTCCTTGCAGAGGACTGGCGCCGGGACGCGAAGAG TCAGTTCTCCTTGCAGAGGACTGGAGCCGGGACGCGAAGAG < 41bp 0.632631873714168 0.904786234278047 0.4406096 0.57854044 prediction 0.544308721127759 Functional Gain - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133403014 chr2:133403010 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_104744 0 0 0 0 0 nucleus 0.500231632119067 0.50023164571421 0.15708088 2.7190286466805e-08 hm5C_site_57889 DeepMRMD:0.15708088;iRNA_m5C:2.7190286466805e-08 57890 chr11 55944440 55944440 1 + C A LUAD 55944436 + 55944416 55944456 41 TCACCACAGAAGGCTTCTTACTGTCAGTGATGGCCTATGAC TCACCACAGAAGGCTTCTTACTGTAAGTGATGGCCTATGAC < 41bp 0.379627452529187 0.772151825320381 0.08339828 0.25011182 prediction 0.544303650640762 Functional Gain - OR5J2 ENSG00000174957 CDS Human protein_coding chr11:55944436 chr11:55944440 stopgain 0.000 0 25 hm5C_associated_SNPs_104745 0 0 0 0 0 unknown 0.500231643918366 0.500231643958663 0 8.05941979820091e-11 hm5C_site_57890 DeepMRMD:0;iRNA_m5C:8.05941979820091e-11 57891 chr19 4345774 4345774 1 + C G rs200526614 4345770 + 4345750 4345790 41 GTTCCTGGGCGACCTGCAGCCAGACGGAAGGATCATGTGGC GTTCCTGGGCGACCTGCAGCCAGAGGGAAGGATCATGTGGC < 41bp 0.519012131116886 0.791137858864159 0.87598014 0.90818024 prediction 0.544251455494547 Functional Gain - MPND ENSG00000008382 CDS Human protein_coding chr19:4345770 chr19:4345774 nonsynonymous SNV 0.523 4 25 hm5C_associated_SNPs_104746 0 0 1 0 1 Ribosome 0.500231643921093 0.500231643921092 0.0644001999999999 0 hm5C_site_57891 DeepMRMD:0.0644001999999999;iRNA_m5C:0 57892 chr10 105181309 105181309 1 + C G BRCA 105181305 + 105181285 105181325 41 GAGGAGCTGCAGGGCGTGCGCAGCCTTATGAGCAACCGAGG GAGGAGCTGCAGGGCGTGCGCAGCGTTATGAGCAACCGAGG < 41bp 0.518450802967735 0.790574421039675 0.3570119 0.7233369 prediction 0.544247236143881 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105181305 chr10:105181309 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_104747 0 0 1 0 1 Nucleus 0.500231643920267 0.500231643925076 0.4466738 9.61919432995728e-12 hm5C_site_57892 DeepMRMD:0.4466738;iRNA_m5C:9.61919432995728e-12 57893 chr1 171173031 171173031 1 + T A LUSC 171173027 + 171173007 171173047 41 TTTATCAGCACCAGGCATGGCACCTGGGTCATGAGCCGTAT TTTATCAGCACCAGGCATGGCACCAGGGTCATGAGCCGTAT < 41bp 0.574246666042206 0.84636111773332 0.10397977 0.2128563 prediction 0.544228903382227 Functional Gain - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171173027 chr1:171173031 nonsynonymous SNV 0.450 4 25 hm5C_associated_SNPs_104748 0 0 0 0 1 exosome 0.500231643928763 0.500231631381314 0 0 hm5C_site_57893 DeepMRMD:0;iRNA_m5C:0 57894 chr2 105472520 105472520 1 + T G rs570097332 105472518 + 105472498 105472538 41 CGCCCCCACACCAGGGCCACCCTGGGGGCTGGGGGGCGGCC CGCCCCCACACCAGGGCCACCCGGGGGGCTGGGGGGCGGCC < 41bp 0.583971976136579 0.856074572881991 0.3830948 0.917387 prediction 0.544205193490824 Functional Gain - POU3F3 ENSG00000198914 CDS Human protein_coding chr2:105472518 chr2:105472520 synonymous SNV . 0 23 hm5C_associated_SNPs_104749 0 0 0 0 0 exosome 0.500231643921091 0.500231643921093 0.834774 4.44089209850063e-15 hm5C_site_57894 DeepMRMD:0.834774;iRNA_m5C:4.44089209850063e-15 57895 chr10 81444239 81444239 1 + C G rs142822767 81444235 + 81444215 81444255 41 GGCAGCGAAGGCGAGCCCCCCACGCGACAACTGCTACAACT GGCAGCGAAGGCGAGCCCCCCACGGGACAACTGCTACAACT < 41bp 0.502096232046684 0.774193478494637 0.102755964 0.19564033 prediction 0.544194492895905 Functional Gain - BEND3P3 ENSG00000226381 ncRNA_intronic Human other chr10:81444235 chr10:81444239 . . 0 25 hm5C_associated_SNPs_104750 0 0 0 0 0 unknown 0.500231799075262 0.500231643921092 0 0 hm5C_site_57895 DeepMRMD:0;iRNA_m5C:0 57896 chr2 231101855 231101855 1 + T G rs115618178 231101853 + 231101833 231101873 41 ACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTC ACCTGCAGGAGCAGGTTTGCCCGGAGCCCATTTTCAGGTTC < 41bp 0.58969036979321 0.861758725610101 0.40979683 0.9055083 prediction 0.544136711633782 Functional Gain - SP140 ENSG00000079263 CDS Human protein_coding chr2:231101853 chr2:231101855 synonymous SNV . 0 23 hm5C_associated_SNPs_104751 0 0 0 0 1 exosome 0.500231641827711 0.5002316431264 0.8110166 2.59737853447461e-09 hm5C_site_57896 DeepMRMD:0.8110166;iRNA_m5C:2.59737853447461e-09 57897 chr6 155577880 155577880 1 + G T LUSC 155577884 - 155577864 155577904 41 AGTAGGGCTGCCCTGCTTCACAGTCTGACGGTGGTCATCAT AGTAGGGCTGCCCTGCTTCACAGTATGACGGTGGTCATCAT < 41bp 0.616372066811972 0.888439327887079 0.17901182 0.17689538 prediction 0.544134522150213 Functional Gain - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155577884 chr6:155577880 nonsynonymous SNV 0.220 0 25 hm5C_associated_SNPs_104752 0 0 1 0 0 Cytosol 0.500231643921628 0.50023164394625 0 4.9243498168039e-11 hm5C_site_57897 DeepMRMD:0;iRNA_m5C:4.9243498168039e-11 57898 chr11 4616094 4616094 1 + C A LUAD 4616090 + 4616070 4616110 41 TTGGGGCAGGATATAGTGCCCTTGCACACCCAAGTGCTGCT TTGGGGCAGGATATAGTGCCCTTGAACACCCAAGTGCTGCT < 41bp 0.390918745122523 0.772066505307193 0.07954928 0.12905502 prediction 0.544133010614385 Functional Gain - OR52I1 ENSG00000232268 CDS Human protein_coding chr11:4616090 chr11:4616094 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_104753 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_57898 DeepMRMD:0;iRNA_m5C:0 57899 chr6 117246757 117246757 1 + C A LUAD 117246753 + 117246733 117246773 41 ATCTCCCTCTGCCATCCAGTCAACCTGGAGGCCTAGGCCCT ATCTCCCTCTGCCATCCAGTCAACATGGAGGCCTAGGCCCT < 41bp 0.345149408961083 0.77205582770458 0.13571167 0.30501753 prediction 0.54411165540916 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117246753 chr6:117246757 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_104754 0 0 0 0 1 membrane 0.500231643921092 0.500313964237128 0 0.000164640632072111 hm5C_site_57899 DeepMRMD:0;iRNA_m5C:0.000164640632072111 57900 chr14 52782053 52782053 1 + C G ESCA 52782052 + 52782032 52782072 41 ATGGCGGAGGAGACGGACCACCTCATTCTCCTGGCTATCAT ATGGCGGAGGAGACGGACCACGTCATTCTCCTGGCTATCAT < 41bp 0.468564908391334 0.772055440082374 0.32419905 0.5196307 prediction 0.544110880164749 Functional Gain - PTGER2 ENSG00000125384 CDS Human protein_coding chr14:52782052 chr14:52782053 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_104755 0 0 0 0 1 exosome 0.500231643921092 0.500231643914948 0.0392614 0 hm5C_site_57900 DeepMRMD:0.0392614;iRNA_m5C:0 57901 chr5 478554 478554 1 + C A rs368434950 478550 + 478530 478570 41 CCACACCACTTCCCCTGCCCCTGCCGAGCCCTGCCGTGGGG CCACACCACTTCCCCTGCCCCTGCAGAGCCCTGCCGTGGGG < 41bp 0.596174459210115 0.868227695103152 0.07336959 0.08406761 prediction 0.544106471786074 Functional Gain - SLC9A3-AS1 ENSG00000225138 ncRNA_exonic Human processed_transcript chr5:478550 chr5:478554 . . 0 25 hm5C_associated_SNPs_104756 0 0 1 0 0 unknown 0.500231643926432 0.500214748521326 0 0 hm5C_site_57901 DeepMRMD:0;iRNA_m5C:0 57902 chr2 63282730 63282730 1 + T A KIRP 63282726 + 63282706 63282746 41 CAGCCAAGAAGAAGTCCTCTCCAGTGCGGGAGAGCTCGGGC CAGCCAAGAAGAAGTCCTCTCCAGAGCGGGAGAGCTCGGGC < 41bp 0.551867897414236 0.82391981115137 0.7845032 0.8754225 prediction 0.544103827474268 Functional Gain - OTX1 ENSG00000115507 CDS Human protein_coding chr2:63282726 chr2:63282730 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_104757 0 0 0 0 1 nucleoplasm 0.50023174764461 0.500231663518766 0.1818386 0 hm5C_site_57902 DeepMRMD:0.1818386;iRNA_m5C:0 57903 chr19 5778597 5778597 1 + C G rs2305926 5778593 + 5778573 5778613 41 GCTGTGTAGGAGATGCAAGACGGTCTGCCAGTTCAGGGCCT GCTGTGTAGGAGATGCAAGACGGTGTGCCAGTTCAGGGCCT < 41bp 0.494288260514829 0.772038600206066 0.13001662 0.53220123 prediction 0.544077200412131 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5778593 chr19:5778597 synonymous SNV . 0 25 hm5C_associated_SNPs_104758 0 0 0 0 0 nucleus 0.500231643920638 0.50023164745424 0.0644024599999999 7.06720326704158e-09 hm5C_site_57903 DeepMRMD:0.0644024599999999;iRNA_m5C:7.06720326704158e-09 57904 chr6 28239932 28239932 1 + T G LIHC 28239929 + 28239909 28239949 41 GGCTCCGGGAGCTCTGTCAACAGTGCTACAGCCCGAGACCC GGCTCCGGGAGCTCTGTCAACAGGGCTACAGCCCGAGACCC < 41bp 0.60546885664374 0.877490318089777 0.37659928 0.90077394 prediction 0.544042922892075 Functional Gain - ZSCAN26 ENSG00000197062;ENSG00000197062 ncRNA_exonic;splicing Human other chr6:28239929 chr6:28239932 . 0.019 0 24 hm5C_associated_SNPs_104759 0 0 0 0 0 Cytosol 0.500231643921102 0.500231643921092 0.80154788 0 hm5C_site_57904 DeepMRMD:0.80154788;iRNA_m5C:0 57905 chr3 101242262 101242262 1 + C A rs149777902 101242258 + 101242238 101242278 41 ACTACAGGCACATGCCACCACGCCCAGCTAATTTTTGTATT ACTACAGGCACATGCCACCACGCCAAGCTAATTTTTGTATT < 41bp 0.621032910874433 0.893052629924284 0.076670736 0.3704111 prediction 0.544039438099702 Functional Gain - FAM172BP ENSG00000175841 ncRNA_exonic Human processed_pseudogene chr3:101242258 chr3:101242262 . . 0 25 hm5C_associated_SNPs_104760 0 0 0 0 0 unknown 0.500231643995101 0.500231644731952 0 1.47370249337087e-09 hm5C_site_57905 DeepMRMD:0;iRNA_m5C:1.47370249337087e-09 57906 chr19 34833008 34833008 1 + C T SKCM 34833007 + 34832987 34833027 41 ACTGGCACCTCAGCAGCAGTCCCCAAAGCAGCAACAACCTC ACTGGCACCTCAGCAGCAGTCTCCAAAGCAGCAACAACCTC < 41bp 0.500160254031555 0.772178769523901 0.06834245 0.9661139 prediction 0.544037030984692 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34833007 chr19:34833008 synonymous SNV . 0 22 hm5C_associated_SNPs_104761 0 0 1 0 0 Cytosol 0.50023206505178 0.500258691358024 0.9322278 5.32526124883415e-05 hm5C_site_57906 DeepMRMD:0.9322278;iRNA_m5C:5.32526124883415e-05 57907 chr20 43836743 43836743 1 + C G HNSC 43836742 + 43836722 43836762 41 GTATATAACAAGAATCAACACCAGACAAAAAATCTCAATCA GTATATAACAAGAATCAACACGAGACAAAAAATCTCAATCA < 41bp 0.510825307244879 0.782841707873215 0.11585769 0.2095488 prediction 0.544032801256672 Functional Gain - SEMG1 ENSG00000124233 CDS Human protein_coding chr20:43836742 chr20:43836743 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_104762 0 0 0 0 0 exosome 0.500524018357272 0.500246985516593 0 0 hm5C_site_57907 DeepMRMD:0;iRNA_m5C:0 57908 chr2 171573769 171573769 1 + C A LUSC 171573765 + 171573745 171573785 41 TGCAGCGGCACCTGCGGACTCACACGGGCGAGAAGCGCTTT TGCAGCGGCACCTGCGGACTCACAAGGGCGAGAAGCGCTTT < 41bp 0.638762255016826 0.910774319796144 0.3197953 0.73237365 prediction 0.544024129558634 Functional Gain - SP5 ENSG00000204335 CDS Human protein_coding chr2:171573765 chr2:171573769 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_104763 0 0 0 0 0 insoluble cytoplasm 0.500231643917053 0.500231643921093 0.4647473 8.08042521782681e-12 hm5C_site_57908 DeepMRMD:0.4647473;iRNA_m5C:8.08042521782681e-12 57909 chr7 151684337 151684337 1 + C A COAD 151684333 + 151684313 151684353 41 AAAAGAGAGAGGGGCTGATTCGAGCAAGGCTGATTGGAGCT AAAAGAGAGAGGGGCTGATTCGAGAAAGGCTGATTGGAGCT < 41bp 0.636537344132513 0.908547922415699 0.8424562 0.8723018 prediction 0.54402115656637 Functional Gain - GALNTL5 ENSG00000106648 CDS Human protein_coding chr7:151684333 chr7:151684337 nonsynonymous SNV 0.281 1 25 hm5C_associated_SNPs_104764 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.0596912000000001 0 hm5C_site_57909 DeepMRMD:0.0596912000000001;iRNA_m5C:0 57910 chr11 129873927 129873927 1 + T G rs4936091 129873925 + 129873905 129873945 41 AGAATAGAAAACACCCACAGCGTGAAAAACTGTAAAATTAA AGAATAGAAAACACCCACAGCGGGAAAAACTGTAAAATTAA < 41bp 0.514519354316978 0.78652581380836 0.093518496 0.8339459 prediction 0.544012918982764 Functional Gain - LINC00167 ENSG00000233220 ncRNA_exonic Human lincRNA chr11:129873925 chr11:129873927 . . 0 23 hm5C_associated_SNPs_104765 0 0 0 1 0 unknown 0.50023243027401 0.500231643921092 0.6678918 0 hm5C_site_57910 DeepMRMD:0.6678918;iRNA_m5C:0 57911 chr18 77171379 77171379 1 + C G rs143180395 77171375 + 77171355 77171395 41 CCCGCCCCCGGCCGACTTCGCGCCCGAAGACTACTCCTCTT CCCGCCCCCGGCCGACTTCGCGCCGGAAGACTACTCCTCTT < 41bp 0.508673963903069 0.78064616441586 0.06385684 0.85824025 prediction 0.543944401025583 Functional Gain - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77171375 chr18:77171379 synonymous SNV . 0 25 hm5C_associated_SNPs_104766 0 0 0 0 0 Cytosol 0.500231619994612 0.500231606577016 0.7164805 0 hm5C_site_57911 DeepMRMD:0.7164805;iRNA_m5C:0 57912 chr3 49751566 49751566 1 + T A OV 49751562 + 49751542 49751582 41 GCTATACACGGCTGCCACATCTGCTGAAAACCAAACTTGAG GCTATACACGGCTGCCACATCTGCAGAAAACCAAACTTGAG < 41bp 0.430861469769588 0.771959998123526 0.24790585 0.3274101 prediction 0.543919996247052 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49751562 chr3:49751566 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_104767 0 0 1 0 1 Nucleus 0.500231607977826 0.50023153547159 0 0 hm5C_site_57912 DeepMRMD:0;iRNA_m5C:0 57913 chr20 4705447 4705447 1 + C A BRCA 4705443 + 4705423 4705463 41 AGGTACTACGAGGCCAACTACTGGCAGTTCCCCGATGGCAT AGGTACTACGAGGCCAACTACTGGAAGTTCCCCGATGGCAT < 41bp 0.644608385025242 0.916560244157104 0.8935817 0.91853523 prediction 0.543903718263724 Functional Gain - PRND ENSG00000171864 CDS Human protein_coding chr20:4705443 chr20:4705447 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_104768 0 0 0 0 0 Nucleus 0.500231775518112 0.500231638267135 0.04990706 0 hm5C_site_57913 DeepMRMD:0.04990706;iRNA_m5C:0 57914 chrX 140983061 140983061 1 + T A STAD 140983057 + 140983037 140983077 41 CGCTGCCTCTGCTGTCAGCCCTGGTCAGCCTTGGCAGGGTT CGCTGCCTCTGCTGTCAGCCCTGGACAGCCTTGGCAGGGTT < 41bp 0.564870071077092 0.836815023284778 0.16756502 0.3872582 prediction 0.543889904415372 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140983057 chrX:140983061 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_104769 0 0 0 0 1 exosome 0.500231643921049 0.500231643921092 0 8.70414851306123e-14 hm5C_site_57914 DeepMRMD:0;iRNA_m5C:8.70414851306123e-14 57915 chr5 180582181 180582181 1 + C G BLCA 180582180 + 180582160 180582200 41 TGTTGGTCTGTACCAATGTGCCAAAGATGGCAGCCAACTTC TGTTGGTCTGTACCAATGTGCGAAAGATGGCAGCCAACTTC < 41bp 0.559046914456875 0.830991561680575 0.12954378 0.32010007 prediction 0.543889294447399 Functional Gain - OR2V2 ENSG00000182613 CDS Human protein_coding chr5:180582180 chr5:180582181 nonsynonymous SNV 0.262 2 22 hm5C_associated_SNPs_104770 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_57915 DeepMRMD:0;iRNA_m5C:0 57916 chr3 108072388 108072388 1 + T C STAD 108072386 + 108072366 108072406 41 TTTGAGAGGGGATCCGAAGTCGTAATACACTGGAAGTATCA TTTGAGAGGGGATCCGAAGTCGCAATACACTGGAAGTATCA < 41bp 0.505186780669617 0.777129280619276 0.0602172 0.077385694 prediction 0.543884999899317 Functional Gain - HHLA2 ENSG00000114455 CDS Human protein_coding chr3:108072386 chr3:108072388 nonsynonymous SNV 0.131 2 23 hm5C_associated_SNPs_104771 0 0 0 0 0 exosome 0.500231643933192 0.500231643922067 0 0 hm5C_site_57916 DeepMRMD:0;iRNA_m5C:0 57917 chr7 37890032 37890032 1 + T G READ 37890030 + 37890010 37890050 41 GAGATGTTGCAGAACAAAGGCTTAACAGGTATAAGGACTCC GAGATGTTGCAGAACAAAGGCTGAACAGGTATAAGGACTCC < 41bp 0.456651767850908 0.77193572808527 0.06921193 0.23465022 prediction 0.54387145617054 Functional Gain - NME8 ENSG00000086288 CDS Human protein_coding chr7:37890030 chr7:37890032 stopgain 0.993 0 23 hm5C_associated_SNPs_104772 0 0 0 0 2 exosome 0.500231692975764 0.500231643943673 0 0 hm5C_site_57917 DeepMRMD:0;iRNA_m5C:0 57918 chr3 51690054 51690054 1 + C T GBM 51690053 + 51690033 51690073 41 CCTGTGCAGTCCACCCCCATCCCCATGATGCCCCGGCATGT CCTGTGCAGTCCACCCCCATCTCCATGATGCCCCGGCATGT < 41bp 0.522467120842861 0.794401899166278 0.070699334 0.9526924 prediction 0.543869556646836 Functional Gain - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51690053 chr3:51690054 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_104773 0 0 1 0 1 chromatin 0.500231643921077 0.500231643994436 0.9053848 1.46718415194869e-10 hm5C_site_57918 DeepMRMD:0.9053848;iRNA_m5C:1.46718415194869e-10 57919 chr18 77246444 77246444 1 + C A rs7233684 77246440 + 77246420 77246460 41 CACCCTGATGCCAGCGGCCCCTGGCGTGAGCCCCAAGCTCC CACCCTGATGCCAGCGGCCCCTGGAGTGAGCCCCAAGCTCC < 41bp 0.627970727339399 0.899903922314764 0.7023851 0.88136345 prediction 0.54386638995073 Functional Gain - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77246440 chr18:77246444 synonymous SNV . 0 25 hm5C_associated_SNPs_104774 0 0 0 0 0 Cytosol 0.500231643921098 0.500231643921092 0.3579567 0 hm5C_site_57919 DeepMRMD:0.3579567;iRNA_m5C:0 Reticulocyte fraction of red cells 57920 chr11 71507232 71507232 1 + C G rs113587125 71507228 + 71507208 71507248 41 GCTATGTGAGCCCCCACGCCCACCCGGGCCTGCATGGTCCC GCTATGTGAGCCCCCACGCCCACCGGGGCCTGCATGGTCCC < 41bp 0.487892243284177 0.771930842146857 0.05308017 0.46204343 prediction 0.543861684293715 Functional Gain - ALG1L9P ENSG00000158483 CDS Human protein_coding chr11:71507228 chr11:71507232 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_104775 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 8.88178419700125e-16 hm5C_site_57920 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 57921 chr20 57767683 57767683 1 + C A rs183636700 57767679 + 57767659 57767699 41 ACGCAGAAGCCTCTGAGCCCCAGGCCCGGCCCAGCCCGCCT ACGCAGAAGCCTCTGAGCCCCAGGACCGGCCCAGCCCGCCT < 41bp 0.625001100766453 0.896928175792558 0.25188726 0.58990675 prediction 0.54385415005221 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57767679 chr20:57767683 nonsynonymous SNV 0.027 0 25 hm5C_associated_SNPs_104776 0 0 0 0 0 exosome 0.500231643921093 0.500231643921228 0.1798135 2.71116462613463e-13 hm5C_site_57921 DeepMRMD:0.1798135;iRNA_m5C:2.71116462613463e-13 57922 chr10 88419195 88419195 1 + T C LIHC 88419193 + 88419173 88419213 41 ATCATCATCTACTGCTACATCTTCATCTTCAGGGCCATCCG ATCATCATCTACTGCTACATCTCCATCTTCAGGGCCATCCG < 41bp 0.531658637306974 0.803562963314184 0.049810946 0.9195094 prediction 0.54380865201442 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419193 chr10:88419195 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_104777 0 0 0 0 1 exosome 0.500231646164109 0.500231659083753 0.8390188 2.58392880425617e-08 hm5C_site_57922 DeepMRMD:0.8390188;iRNA_m5C:2.58392880425617e-08 57923 chr17 20744493 20744493 1 + C G rs534152850 20744492 + 20744472 20744512 41 TGCCTGAGCCCAAGCCGGGGCCTGGTGGGGCCGGGACCGCC TGCCTGAGCCCAAGCCGGGGCGTGGTGGGGCCGGGACCGCC < 41bp 0.527057556468403 0.798961672482261 0.69159865 0.84760725 prediction 0.543808232027717 Functional Gain - LOC100287072;CCDC144NL ENSG00000226981 ncRNA_exonic Human unprocessed_pseudogene chr17:20744492 chr17:20744493 . . 0 22 hm5C_associated_SNPs_104778 0 0 0 0 0 unknown 0.500590386938534 0.500231600988184 0.3120172 0 hm5C_site_57923 DeepMRMD:0.3120172;iRNA_m5C:0 57924 chr17 74076406 74076406 1 + C G LUAD 74076402 + 74076382 74076422 41 CAGGACGGCCACGTGAAGCTCAACCTGGCCCTCGCCACGGA CAGGACGGCCACGTGAAGCTCAACGTGGCCCTCGCCACGGA < 41bp 0.475654405398552 0.771898493172585 0.8045393 0.92387867 prediction 0.54379698634517 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74076402 chr17:74076406 nonsynonymous SNV 0.168 0 25 hm5C_associated_SNPs_104779 0 0 0 0 2 chromatin 0.500231644078371 0.500231643943196 0.23867874 0 hm5C_site_57924 DeepMRMD:0.23867874;iRNA_m5C:0 57925 chr5 180650537 180650537 1 + C A rs55879636 180650533 + 180650513 180650553 41 TCCCGCCCTGTTCTCTAGTGCGGACTAGAGCGTCTCCTCGC TCCCGCCCTGTTCTCTAGTGCGGAATAGAGCGTCTCCTCGC < 41bp 0.43251965080624 0.771868973072611 0.6136015 0.7110127 prediction 0.543737946145223 Functional Gain - TRIM41 ENSG00000146063 UTR5 Human protein_coding chr5:180650533 chr5:180650537 . . 0 25 hm5C_associated_SNPs_104780 0 0 1 0 0 chromatin 0.500231643915538 0.500231643916602 0.1948224 2.12674322597195e-12 hm5C_site_57925 DeepMRMD:0.1948224;iRNA_m5C:2.12674322597195e-12 57926 chr10 135369242 135369242 1 + C G rs377480395 135369241 + 135369221 135369261 41 CCAGTAGGGGGTGGTCAGCACCGGCCACTCCCTCCTCCCAC CCAGTAGGGGGTGGTCAGCACGGGCCACTCCCTCCTCCCAC < 41bp 0.477363342574367 0.771868481303628 0.58730304 0.914266 prediction 0.543736962607256 Functional Gain - SYCE1 ENSG00000171772;ENSG00000203772 intronic Human other chr10:135369241 chr10:135369242 . . 0 22 hm5C_associated_SNPs_104781 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.65392592 0 hm5C_site_57926 DeepMRMD:0.65392592;iRNA_m5C:0 57927 chrX 77373615 77373615 1 + T A KIRC 77373611 + 77373591 77373631 41 TTGATGAAGAAGGAGCTGAACTACTTTGCAAAGGCCTTGGA TTGATGAAGAAGGAGCTGAACTACATTGCAAAGGCCTTGGA < 41bp 0.59994199506846 0.871807465703838 0.08433035 0.45817 prediction 0.543730941270756 Functional Gain - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373611 chrX:77373615 nonsynonymous SNV 0.981 5 25 hm5C_associated_SNPs_104782 0 0 1 0 2 Ribosome 0.500231664304225 0.500231674598251 0 2.05880519299484e-08 hm5C_site_57927 DeepMRMD:0;iRNA_m5C:2.05880519299484e-08 57928 chr1 12836101 12836101 1 + C A rs41303871 12836097 + 12836077 12836117 41 GGCCAGATGAGGAATCTCCGCAAACTTGTTCTCTTCAACAT GGCCAGATGAGGAATCTCCGCAAAATTGTTCTCTTCAACAT < 41bp 0.371976511458843 0.771861192629412 0.19037473 0.28872335 prediction 0.543722385258824 Functional Gain - PRAMEF12 ENSG00000116726 CDS Human protein_coding chr1:12836097 chr1:12836101 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_104783 0 0 0 0 0 unknown 0.500231643921094 0.500231643921838 0 1.48880907602233e-12 hm5C_site_57928 DeepMRMD:0;iRNA_m5C:1.48880907602233e-12 57929 chr15 59064095 59064095 1 + T G PRAD 59064093 + 59064073 59064113 41 GTTGCAGCGACCCGAGCCCTCCTGGGGAATCTCCGAGCCTG GTTGCAGCGACCCGAGCCCTCCGGGGGAATCTCCGAGCCTG < 41bp 0.611230529883468 0.88308031498297 0.8719618 0.92687136 prediction 0.543699570199005 Functional Gain - MINDY2 ENSG00000128923 CDS Human protein_coding chr15:59064093 chr15:59064095 synonymous SNV . 0 23 hm5C_associated_SNPs_104784 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0.10981912 0 hm5C_site_57929 DeepMRMD:0.10981912;iRNA_m5C:0 57930 chr20 49199609 49199609 1 + C A rs543779641 49199605 + 49199585 49199625 41 CCAGGCGGGCGGCACGCCAACAGCCCCCCCCTTGAATCTGC CCAGGCGGGCGGCACGCCAACAGCACCCCCCTTGAATCTGC < 41bp 0.633764381667879 0.90561119279416 0.050718546 0.05217126 prediction 0.543693622252561 Functional Gain - PTPN1 ENSG00000196396 UTR3 Human protein_coding chr20:49199605 chr20:49199609 . . 0 25 hm5C_associated_SNPs_104785 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57930 DeepMRMD:0;iRNA_m5C:0 57931 chr17 59560884 59560884 1 + C G rs149961771 59560880 + 59560860 59560900 41 AACTGGACTGACGGATGACTCTCACGTCTCCTCCATAGCCC AACTGGACTGACGGATGACTCTCAGGTCTCCTCCATAGCCC < 41bp 0.521147503325304 0.792991025791151 0.0009925067 0.019566625 prediction 0.543687044931694 Functional Gain - TBX4 ENSG00000121075 UTR3 Human protein_coding chr17:59560880 chr17:59560884 . . 0 25 hm5C_associated_SNPs_104786 0 0 0 0 0 exosome 0.500231643907938 0.50023164391125 0 6.62514487714816e-12 hm5C_site_57931 DeepMRMD:0;iRNA_m5C:6.62514487714816e-12 57932 chr1 247752154 247752154 1 + C G LUAD 247752150 + 247752130 247752170 41 GCCACCACCCTGGTACAGTCCACCCTCACCCTGCAGCTGCC GCCACCACCCTGGTACAGTCCACCGTCACCCTGCAGCTGCC < 41bp 0.508664919860478 0.780505472995381 0.03921938 0.067203104 prediction 0.543681106269808 Functional Gain - OR2G2 ENSG00000177489 CDS Human protein_coding chr1:247752150 chr1:247752154 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_104787 0 0 0 0 0 unknown 0.500231643921092 0.500231643921082 0 0 hm5C_site_57932 DeepMRMD:0;iRNA_m5C:0 57933 chr3 101498114 101498114 1 + C A rs555572749 101498110 + 101498090 101498130 41 GCGGCCTGGCGCTGCGGCGACCGACCGGGGCGTCAGGATCC GCGGCCTGGCGCTGCGGCGACCGAACGGGGCGTCAGGATCC < 41bp 0.446787598764617 0.771814966841418 0.78219616 0.8965297 prediction 0.543629933682836 Functional Gain - NXPE3 ENSG00000144815 UTR5 Human protein_coding chr3:101498110 chr3:101498114 . . 0 25 hm5C_associated_SNPs_104788 0 0 1 0 1 Ribosome 0.50023164401005 0.500231641142708 0.22866708 0 hm5C_site_57933 DeepMRMD:0.22866708;iRNA_m5C:0 57934 chr9 33295166 33295166 1 + C A LAML 33295162 + 33295142 33295182 41 GGAGGGGGCCAGGCCACGACCAGGCAGAAATCCACCAAAAC GGAGGGGGCCAGGCCACGACCAGGAAGAAATCCACCAAAAC < 41bp 0.644453238154367 0.916266267238758 0.8972529 0.9122461 prediction 0.543626058168782 Functional Gain - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33295162 chr9:33295166 synonymous SNV . 0 25 hm5C_associated_SNPs_104789 0 0 1 0 0 Nucleus 0.500231643921089 0.500231643918134 0.0299863999999999 0 hm5C_site_57934 DeepMRMD:0.0299863999999999;iRNA_m5C:0 57935 chr12 10339129 10339129 1 + C A LUAD 10339125 + 10339105 10339145 41 ATGGGGAAGATGGGGGCCCACCACCCTGTGAAGTGACCGTC ATGGGGAAGATGGGGGCCCACCACACTGTGAAGTGACCGTC < 41bp 0.354390049856996 0.771760641032633 0.21220657 0.35448223 prediction 0.543521282065266 Functional Gain - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10339125 chr12:10339129 nonsynonymous SNV 0.080 4 25 hm5C_associated_SNPs_104790 0 0 0 0 1 nucleus 0.500231669449974 0.500231643873497 0 0 hm5C_site_57935 DeepMRMD:0;iRNA_m5C:0 57936 chr12 54338822 54338822 1 + C A OV 54338818 + 54338798 54338838 41 CAGCCCGAGGTGAGCAGCTACCGGCGCGGGCGCAAGAAACG CAGCCCGAGGTGAGCAGCTACCGGAGCGGGCGCAAGAAACG < 41bp 0.392688868372775 0.771740524698222 0.89194363 0.90918326 prediction 0.543481049396443 Functional Gain - HOXC13 ENSG00000123364 CDS Human protein_coding chr12:54338818 chr12:54338822 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_104791 0 0 0 0 1 nucleus 0.500231642916623 0.500231643921085 0.0344792600000001 2.00892324997426e-09 hm5C_site_57936 DeepMRMD:0.0344792600000001;iRNA_m5C:2.00892324997426e-09 57937 chr5 140622484 140622484 1 + T G rs149303360 140622481 + 140622461 140622501 41 GCAATGGCGCGATCTGGGCTCACTGCAACCTCGCCTCCCCG GCAATGGCGCGATCTGGGCTCACGGCAACCTCGCCTCCCCG < 41bp 0.595912416881598 0.867623429008476 0.22223559 0.6813512 prediction 0.543422024253757 Functional Gain - PCDHB19P ENSG00000262096 downstream Human transcribed_unprocessed_pseudogene chr5:140622481 chr5:140622484 . . 0 24 hm5C_associated_SNPs_104792 0 0 0 0 0 unknown 0.500231643921093 0.50023164849704 0.3627024 9.15189590777743e-09 hm5C_site_57937 DeepMRMD:0.3627024;iRNA_m5C:9.15189590777743e-09 57938 chr10 89264929 89264929 1 + T G SKCM 89264927 + 89264907 89264947 41 ACCCCGGTGCAGCTGGTCGCCCTCATTCGCCACGGCACCCG ACCCCGGTGCAGCTGGTCGCCCGCATTCGCCACGGCACCCG < 41bp 0.601635624159424 0.873344146401177 0.02657631 0.03838262 prediction 0.543417044483508 Functional Gain - MINPP1 ENSG00000107789 CDS Human protein_coding chr10:89264927 chr10:89264929 nonsynonymous SNV 0.939 3 23 hm5C_associated_SNPs_104793 0 0 1 0 0 Ribosome 0.500231637797083 0.500231642192877 0 8.79158834621308e-09 hm5C_site_57938 DeepMRMD:0;iRNA_m5C:8.79158834621308e-09 57939 chr5 40852635 40852635 1 + T G LUSC 40852632 + 40852612 40852652 41 AAGTCATGTCAAACATGTATCAGTGCCAGTTTGCTCTTCCC AAGTCATGTCAAACATGTATCAGGGCCAGTTTGCTCTTCCC < 41bp 0.381999338688127 0.771701305081753 0.26363826 0.9459721 prediction 0.543402610163507 Functional Gain - CARD6 ENSG00000132357 CDS Human protein_coding chr5:40852632 chr5:40852635 nonsynonymous SNV 0.975 4 24 hm5C_associated_SNPs_104794 0 0 0 0 0 exosome 0.500233919704177 0.500239753275976 0.8919442 1.16671435983484e-05 hm5C_site_57939 DeepMRMD:0.8919442;iRNA_m5C:1.16671435983484e-05 57940 chr1 155289612 155289612 1 + C T STAD 155289611 + 155289591 155289631 41 TACCTTGACCTCTTTGGGGACCCCAGTGTGACCGGCAAAAT TACCTTGACCTCTTTGGGGACTCCAGTGTGACCGGCAAAAT < 41bp 0.501264117023816 0.772959938220018 0.12546423 0.93026173 prediction 0.543391642392404 Functional Gain - FDPS ENSG00000160752 CDS Human protein_coding chr1:155289611 chr1:155289612 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_104795 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643919246 0.86052346 0 hm5C_site_57940 DeepMRMD:0.86052346;iRNA_m5C:0 57941 chr7 48092478 48092478 1 + C A GBM 48092474 + 48092454 48092494 41 GAAGGTCCCCAGGATGCAGCCAGGCTCCAGGATGCAGAGGC GAAGGTCCCCAGGATGCAGCCAGGATCCAGGATGCAGAGGC < 41bp 0.632337576502199 0.904031321231245 0.5138656 0.82941395 prediction 0.543387489458092 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48092474 chr7:48092478 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104796 0 0 0 0 1 exosome 0.500231644570927 0.500231644636931 0.6310967 1.3200818216319e-10 hm5C_site_57941 DeepMRMD:0.6310967;iRNA_m5C:1.3200818216319e-10 57942 chr16 19132702 19132702 1 + C A rs9933536 19132698 + 19132678 19132718 41 ACTGTGTTTTTGGTTGCAGTCTGGCGGCTGCAGGCATAGCG ACTGTGTTTTTGGTTGCAGTCTGGAGGCTGCAGGCATAGCG < 41bp 0.470870291070282 0.771689010257523 0.26449254 0.36533076 prediction 0.543378020515047 Functional Gain - ITPRIPL2 ENSG00000261759 ncRNA_exonic Human antisense chr16:19132698 chr16:19132702 . . 0 25 hm5C_associated_SNPs_104797 0 0 1 0 0 Ribosome 0.500243258818709 0.500237465326155 0 0 hm5C_site_57942 DeepMRMD:0;iRNA_m5C:0 57943 chr12 21680968 21680968 1 + C G rs7302146 21680967 + 21680947 21680987 41 CCAATGGTGGCAAGGGCGGCCCAGGCTGGCGCTGCGGCTCC CCAATGGTGGCAAGGGCGGCCGAGGCTGGCGCTGCGGCTCC < 41bp 0.53822468842288 0.809874825256016 0.78276694 0.9060426 prediction 0.543300273666272 Functional Gain - SPX ENSG00000134548 intronic Human protein_coding chr12:21680967 chr12:21680968 . . 0 22 hm5C_associated_SNPs_104798 0 0 0 0 0 exosome 0.500231643923816 0.500231643921092 0.24655132 0 hm5C_site_57943 DeepMRMD:0.24655132;iRNA_m5C:0 57944 chr11 55873014 55873014 1 + T A PRAD 55873010 + 55872990 55873030 41 GTCAACGTGGTTTCCATGAGCAGATTGCATTTCTACGACTC GTCAACGTGGTTTCCATGAGCAGAATGCATTTCTACGACTC < 41bp 0.527976050995392 0.799620228232056 0.48360723 0.4711223 prediction 0.543288354473327 Functional Gain - OR8H2 ENSG00000181767 CDS Human protein_coding chr11:55873010 chr11:55873014 nonsynonymous SNV 0.479 3 25 hm5C_associated_SNPs_104799 0 0 0 0 0 unknown 0.500231643921047 0.500231643921187 0 2.8022029141539e-13 hm5C_site_57944 DeepMRMD:0;iRNA_m5C:2.8022029141539e-13 57945 chr4 110415851 110415851 1 + T C COAD 110415849 + 110415829 110415869 41 TGCTTCTGCTCCAGCTCCAGCTTCAGCTCCAGCTCCTGTCG TGCTTCTGCTCCAGCTCCAGCTCCAGCTCCAGCTCCTGTCG < 41bp 0.491815598356781 0.771624045489264 0.0475519 0.47154006 prediction 0.543248090978528 Functional Gain - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110415849 chr4:110415851 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_104800 0 0 1 0 1 Cytosol 0.500231643921093 0.500231643921045 0 0 hm5C_site_57945 DeepMRMD:0;iRNA_m5C:0 57946 chr10 124740062 124740062 1 + C G BLCA 124740058 + 124740038 124740078 41 CCGCGGAAACGAGGCCTCTGCGTCCTCTGTGGCCTCCCCGC CCGCGGAAACGAGGCCTCTGCGTCGTCTGTGGCCTCCCCGC < 41bp 0.486860378253218 0.771610853156841 0.23586825 0.28698665 prediction 0.543221706313682 Functional Gain - PSTK ENSG00000179988 CDS Human protein_coding chr10:124740058 chr10:124740062 nonsynonymous SNV 0.810 0 25 hm5C_associated_SNPs_104801 0 0 0 0 0 nucleus 0.500231644717165 0.500231643921093 0 0 hm5C_site_57946 DeepMRMD:0;iRNA_m5C:0 57947 chr17 20059356 20059356 1 + C G rs373920002 20059352 + 20059332 20059372 41 GCGGGAGAGCAGCGGCTCCGCCGGCAGCTGCTGGGAACTGG GCGGGAGAGCAGCGGCTCCGCCGGGAGCTGCTGGGAACTGG < 41bp 0.489866136965661 0.771601106784277 0.38285175 0.8465241 prediction 0.543202213568555 Functional Gain - SPECC1 ENSG00000128487 UTR5 Human protein_coding chr17:20059352 chr17:20059356 . . 0 25 hm5C_associated_SNPs_104802 0 0 0 0 0 Cytosol 0.500231659380289 0.500231643921093 0.6930482 0 hm5C_site_57947 DeepMRMD:0.6930482;iRNA_m5C:0 57948 chr12 6554685 6554685 1 + C A KIRC 6554681 + 6554661 6554701 41 TCCTTCTCTCCTGACCACCACACCCGGCCCCACTGTGAGAG TCCTTCTCTCCTGACCACCACACCAGGCCCCACTGTGAGAG < 41bp 0.337524487064753 0.771584803967384 0.20068502 0.33536962 prediction 0.543169607934768 Functional Gain - CD27 ENSG00000139193 CDS Human protein_coding chr12:6554681 chr12:6554685 synonymous SNV . 0 25 hm5C_associated_SNPs_104803 0 0 0 0 2 exosome 0.500231643911854 0.500231650901262 0 1.39788167707877e-08 hm5C_site_57948 DeepMRMD:0;iRNA_m5C:1.39788167707877e-08 57949 chr3 138669852 138669852 1 + C G rs77164417 138669851 + 138669831 138669871 41 GTGTTTTCATGATGGGACTGCCGCACAGACCACAGAGAAGC GTGTTTTCATGATGGGACTGCGGCACAGACCACAGAGAAGC < 41bp 0.465944749795907 0.771578297068501 0.12278789 0.2922379 prediction 0.543156594137003 Functional Gain - FOXL2NB ENSG00000206262 UTR3 Human protein_coding chr3:138669851 chr3:138669852 . . 0 22 hm5C_associated_SNPs_104804 0 0 0 1 0 Nucleus 0.500231644016228 0.500231685996011 0 8.39595659662962e-08 hm5C_site_57949 DeepMRMD:0;iRNA_m5C:8.39595659662962e-08 57950 chr11 55595135 55595135 1 + C A ESCA 55595131 + 55595111 55595151 41 GCTGCGTGTGGAGCTGACCTCTTGCTGCTACTTCTGTGGGA GCTGCGTGTGGAGCTGACCTCTTGATGCTACTTCTGTGGGA < 41bp 0.629884789695125 0.901442281531463 0.15318671 0.21937633 prediction 0.543114983672677 Functional Gain - OR5L2 ENSG00000205030 CDS Human protein_coding chr11:55595131 chr11:55595135 stopgain 0.128 0 25 hm5C_associated_SNPs_104805 0 0 0 0 0 unknown 0.500233082234537 0.500231479091922 0 0 hm5C_site_57950 DeepMRMD:0;iRNA_m5C:0 57951 chr1 86913242 86913242 1 + C G UCEC 86913241 + 86913221 86913261 41 ACCCATCATTCTCTGCAAGCCCTGAAAGTGACAGTGACCTC ACCCATCATTCTCTGCAAGCCGTGAAAGTGACAGTGACCTC < 41bp 0.467680204840579 0.771548962894477 0.011532962 0.087187916 prediction 0.543097925788955 Functional Gain - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86913241 chr1:86913242 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_104806 0 0 0 0 1 exosome 0.500232865179128 0.500231637089853 0 0 hm5C_site_57951 DeepMRMD:0;iRNA_m5C:0 57952 chr19 42396861 42396861 1 + C A OV 42396857 + 42396837 42396877 41 TTGGGTTGGGCGGGACCGAGCCAGCTACGAGGCCCGGGAGC TTGGGTTGGGCGGGACCGAGCCAGATACGAGGCCCGGGAGC < 41bp 0.420105220957206 0.771541557762961 0.8928535 0.89570534 prediction 0.543083115525922 Functional Gain - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42396857 chr19:42396861 nonsynonymous SNV 0.137 3 25 hm5C_associated_SNPs_104807 0 0 1 0 1 Cytosol 0.500231643921086 0.500231643921092 0.0057036800000001 1.33226762955019e-14 hm5C_site_57952 DeepMRMD:0.0057036800000001;iRNA_m5C:1.33226762955019e-14 57953 chr1 26524503 26524503 1 + C A rs199601379 26524499 + 26524479 26524519 41 GTGGAGCCCCTCGCCCGGATCATCCGCGTCATCCTGCAGTC GTGGAGCCCCTCGCCCGGATCATCAGCGTCATCCTGCAGTC < 41bp 0.349773998845844 0.77153631897911 0.19637042 0.33127975 prediction 0.54307263795822 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524499 chr1:26524503 nonsynonymous SNV 0.323 3 25 hm5C_associated_SNPs_104808 0 0 0 0 2 exosome 0.500231643921137 0.500232169404745 0 1.05096721658704e-06 hm5C_site_57953 DeepMRMD:0;iRNA_m5C:1.05096721658704e-06 57954 chr12 5020972 5020972 1 + C A STAD 5020968 + 5020948 5020988 41 GCTTCATCAAGGAGGAGGAGCGCCCTCTGCCCGAGAAGGAG GCTTCATCAAGGAGGAGGAGCGCCATCTGCCCGAGAAGGAG < 41bp 0.36338391298032 0.771505053635776 0.31054324 0.3346578 prediction 0.543010107271553 Functional Gain - KCNA1 ENSG00000111262 CDS Human protein_coding chr12:5020968 chr12:5020972 nonsynonymous SNV 0.769 4 25 hm5C_associated_SNPs_104809 0 0 0 0 0 unknown 0.500231643921092 0.500231643923498 0 4.81170658872543e-12 hm5C_site_57954 DeepMRMD:0;iRNA_m5C:4.81170658872543e-12 57955 chr7 5112057 5112057 1 + C G rs182833256 5112056 + 5112036 5112076 41 TGCTGCTGCTCCCGGCCGCCCCGGTCCCCACCGCCAAAGCC TGCTGCTGCTCCCGGCCGCCCGGGTCCCCACCGCCAAAGCC < 41bp 0.459026855010991 0.771503460911471 0.36024272 0.8610438 prediction 0.543006921822941 Functional Gain - RBAK-RBAKDN ENSG00000272968 CDS Human protein_coding chr7:5112056 chr7:5112057 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_104810 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.7220876 0 hm5C_site_57955 DeepMRMD:0.7220876;iRNA_m5C:0 57956 chr11 118186305 118186305 1 + C A rs2231449 118186301 + 118186281 118186321 41 GCTGGCCCAGGTCTCCTCTCCAGTCCCCCTGCGACTCCCTG GCTGGCCCAGGTCTCCTCTCCAGTACCCCTGCGACTCCCTG < 41bp 0.397030943259881 0.771502483531462 0.32286742 0.07919791 prediction 0.543004967062924 Functional Gain - CD3E ENSG00000198851 UTR3 Human protein_coding chr11:118186301 chr11:118186305 . . 0 25 hm5C_associated_SNPs_104811 1 0 1 1 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_57956 DeepMRMD:0;iRNA_m5C:0 Severe Combined Immune Deficiency Severe Combined Immune Deficiency 57957 chr5 179260153 179260153 1 + C G rs4935 179260149 + 179260129 179260169 41 ACAGCCAAGCAGCTGCTGCTCTGACCCCAGCAAGCCGGGTG ACAGCCAAGCAGCTGCTGCTCTGAGCCCAGCAAGCCGGGTG < 41bp 0.475792328556797 0.771477461581898 0.25870246 0.28164572 prediction 0.542954923163797 Functional Gain - SQSTM1 ENSG00000161011 CDS Human protein_coding chr5:179260149 chr5:179260153 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_104812 0 0 1 0 0 Ribosome 0.500231551422096 0.500231643918845 0 1.84993498741903e-07 hm5C_site_57957 DeepMRMD:0;iRNA_m5C:1.84993498741903e-07 57958 chr1 120114316 120114316 1 + C G rs143884843 120114315 + 120114295 120114335 41 CCCAAGAAGGCCCCAAGTGTCCGAGGACAGTTCTACTATAT CCCAAGAAGGCCCCAAGTGTCGGAGGACAGTTCTACTATAT < 41bp 0.51369048468041 0.785163970372222 0.6210103 0.9358913 prediction 0.542946971383623 Functional Gain - HSD3BP4 ENSG00000203855 ncRNA_exonic Human unprocessed_pseudogene chr1:120114315 chr1:120114316 . . 0 22 hm5C_associated_SNPs_104813 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.629762 0 hm5C_site_57958 DeepMRMD:0.629762;iRNA_m5C:0 57959 chr2 228680239 228680239 1 + T C UCEC 228680237 + 228680217 228680257 41 CATCCTAAATTTATTGTGGGCTTCACACGGCAGCTGGCCAA CATCCTAAATTTATTGTGGGCTCCACACGGCAGCTGGCCAA < 41bp 0.533980737408967 0.805448713698032 0.054059327 0.20039806 prediction 0.542935952578129 Functional Gain - CCL20 ENSG00000115009 CDS Human protein_coding chr2:228680237 chr2:228680239 nonsynonymous SNV 0.793 4 23 hm5C_associated_SNPs_104814 0 0 1 0 3 nucleus 0.500231643921092 0.500231643921093 0 1.99840144432528e-15 hm5C_site_57959 DeepMRMD:0;iRNA_m5C:1.99840144432528e-15 57960 chr5 140857570 140857570 1 + T G UCEC 140857567 + 140857547 140857587 41 GGGCTGCACACTGGTCAAATCAGTACTGCCCGTCCAGTCCA GGGCTGCACACTGGTCAAATCAGGACTGCCCGTCCAGTCCA < 41bp 0.406939740939226 0.771448663300067 0.21196726 0.8705365 prediction 0.542897326600135 Functional Gain - PCDHGC3 ENSG00000240184 CDS Human protein_coding chr5:140857567 chr5:140857570 nonsynonymous SNV 0.997 0 24 hm5C_associated_SNPs_104815 0 0 0 0 0 Cytosol 0.500231643921158 0.500231643922717 0.741073 3.11639603012281e-12 hm5C_site_57960 DeepMRMD:0.741073;iRNA_m5C:3.11639603012281e-12 57961 chr16 4432235 4432235 1 + C G rs568102911 4432231 + 4432211 4432251 41 ATGGGGCAGGGGACACGGCCCAGCCCTACACCAGTCACGCC ATGGGGCAGGGGACACGGCCCAGCGCTACACCAGTCACGCC < 41bp 0.518617939024513 0.790066212773953 0.080488145 0.41575134 prediction 0.54289654749888 Functional Gain - VASN ENSG00000168140 CDS Human protein_coding chr16:4432231 chr16:4432235 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_104816 0 0 0 0 0 nucleus 0.500231641937301 0.500231643868751 0 3.86289955578434e-09 hm5C_site_57961 DeepMRMD:0;iRNA_m5C:3.86289955578434e-09 57962 chr11 101785787 101785787 1 + C G rs186513569 101785786 + 101785766 101785806 41 CGGCTGCAGGGTTGCTGCCGCCCCATCTGCTATTGCCCGGC CGGCTGCAGGGTTGCTGCCGCGCCATCTGCTATTGCCCGGC < 41bp 0.525002095554332 0.796442176302685 0.42335328 0.4159567 prediction 0.542880161496707 Functional Gain - CEP126 ENSG00000110318 UTR5 Human protein_coding chr11:101785786 chr11:101785787 . . 0 22 hm5C_associated_SNPs_104817 0 0 0 0 0 exosome 0.500231643979971 0.500231644164753 0 3.69564157054469e-10 hm5C_site_57962 DeepMRMD:0;iRNA_m5C:3.69564157054469e-10 57963 chr11 75280272 75280272 1 + T G rs143305212 75280270 + 75280250 75280290 41 CTTGGAGCCAGGGGGAGGTGCTTGGGGGACCCACTCACCAA CTTGGAGCCAGGGGGAGGTGCTGGGGGGACCCACTCACCAA < 41bp 0.589693797672366 0.861132883028907 0.85458034 0.9312264 prediction 0.542878170713084 Functional Gain - SERPINH1 ENSG00000149257 UTR3 Human protein_coding chr11:75280270 chr11:75280272 . . 0 23 hm5C_associated_SNPs_104818 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.15329212 0 hm5C_site_57963 DeepMRMD:0.15329212;iRNA_m5C:0 57964 chr14 96343204 96343204 1 + C A rs545575316 96343200 + 96343180 96343220 41 CGCGCTGCCTCTCCGAGGTCCTCCCGCCGAGCCCCGGCGCG CGCGCTGCCTCTCCGAGGTCCTCCAGCCGAGCCCCGGCGCG < 41bp 0.398815788234451 0.771424719718851 0.24623188 0.94949806 prediction 0.542849439437702 Functional Gain - TUNAR ENSG00000250366 ncRNA_exonic Human protein_coding chr14:96343200 chr14:96343204 . . 0 25 hm5C_associated_SNPs_104819 0 0 0 0 0 exosome 0.500231643929992 0.500231643928752 0.89899612 0 hm5C_site_57964 DeepMRMD:0.89899612;iRNA_m5C:0 57965 chr1 45092025 45092025 1 + C A rs76104973 45092021 + 45092001 45092041 41 AGGAGAGTCTCCAACGGCATCACCCCACTCATCTGCCACCG AGGAGAGTCTCCAACGGCATCACCACACTCATCTGCCACCG < 41bp 0.338420137108338 0.771405015405156 0.22797999 0.31394327 prediction 0.542810030810313 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45092021 chr1:45092025 synonymous SNV . 0 25 hm5C_associated_SNPs_104820 0 0 0 0 2 Ribosome 0.500231686972663 0.500231737441695 0 1.00938063907208e-07 hm5C_site_57965 DeepMRMD:0;iRNA_m5C:1.00938063907208e-07 57966 chr16 67685181 67685181 1 + C G rs181904109 67685177 + 67685157 67685197 41 AGGGTGAAGCCGCTGTGCGCCAGGCCGAGGATGCCATCCAA AGGGTGAAGCCGCTGTGCGCCAGGGCGAGGATGCCATCCAA < 41bp 0.529642922052291 0.801046142323474 0.57479525 0.8650905 prediction 0.542806440542365 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67685177 chr16:67685181 nonsynonymous SNV 0.228 3 25 hm5C_associated_SNPs_104821 0 0 0 0 1 chromatin 0.500231643349745 0.500231643921092 0.5805905 1.14269482764939e-09 hm5C_site_57966 DeepMRMD:0.5805905;iRNA_m5C:1.14269482764939e-09 57967 chr20 5296651 5296651 1 + T G rs910973 5296648 + 5296628 5296668 41 CCGCCCCATCAACGCGGCCGCACTGTCGGCGTCTAGAGGCG CCGCCCCATCAACGCGGCCGCACGGTCGGCGTCTAGAGGCG < 41bp 0.40260893836615 0.771390218551015 0.035354704 0.14009488 prediction 0.542780437102031 Functional Gain - PROKR2 ENSG00000101292 intronic Human protein_coding chr20:5296648 chr20:5296651 . . 0 24 hm5C_associated_SNPs_104822 0 0 0 0 0 exosome 0.500230634467503 0.500231643896968 0 2.01885893091891e-06 hm5C_site_57967 DeepMRMD:0;iRNA_m5C:2.01885893091891e-06 57968 chr1 93811787 93811787 1 + C G rs568293928 93811786 + 93811766 93811806 41 TCGGGCTCTATAGAGCCGAGCCCGCTGGGTACCCGCCCGGT TCGGGCTCTATAGAGCCGAGCGCGCTGGGTACCCGCCCGGT < 41bp 0.503914420486817 0.775295636511299 0.3384878 0.6915863 prediction 0.542762432048965 Functional Gain - DR1 ENSG00000117505 UTR5 Human protein_coding chr1:93811786 chr1:93811787 . . 0 22 hm5C_associated_SNPs_104823 0 0 1 0 0 Cytosol 0.500231643921171 0.500231643920806 0.3831726 0 hm5C_site_57968 DeepMRMD:0.3831726;iRNA_m5C:0 57969 chr14 20344841 20344841 1 + C G LUSC 20344840 + 20344820 20344860 41 TATGCTTCTGTCATTAGTCCCCAGGTGTGTGTTGCTCTCGT TATGCTTCTGTCATTAGTCCCGAGGTGTGTGTTGCTCTCGT < 41bp 0.546824191993059 0.818193941441853 0.8951384 0.93148005 prediction 0.542739498897587 Functional Gain - OR4K2 ENSG00000165762 CDS Human protein_coding chr14:20344840 chr14:20344841 nonsynonymous SNV 0.054 1 22 hm5C_associated_SNPs_104824 0 0 0 0 0 unknown 0.500231645058947 0.500231638923616 0.0726833 0 hm5C_site_57969 DeepMRMD:0.0726833;iRNA_m5C:0 57970 chr11 71249236 71249236 1 + T G STAD 71249233 + 71249213 71249253 41 GTGTGCTGCTGTGTGCCAGCCTGTTCCTGCTCCAGCTGTGG GTGTGCTGCTGTGTGCCAGCCTGGTCCTGCTCCAGCTGTGG < 41bp 0.385996037805763 0.77133998811437 0.20595956 0.41407293 prediction 0.542679976228741 Functional Gain - KRTAP5-8 ENSG00000241233 CDS Human protein_coding chr11:71249233 chr11:71249236 nonsynonymous SNV 0.993 1 24 hm5C_associated_SNPs_104825 0 0 0 0 0 unknown 0.500231642585499 0.500229967822107 0 0 hm5C_site_57970 DeepMRMD:0;iRNA_m5C:0 57971 chr20 54823914 54823914 1 + C A UCEC 54823910 + 54823890 54823930 41 TCTGACAGCAATGAATGCTTCGTGCTGCCTGCCCTCTGTTC TCTGACAGCAATGAATGCTTCGTGATGCCTGCCCTCTGTTC < 41bp 0.610121444918923 0.881443772176214 0.14756063 0.32811517 prediction 0.542644654514583 Functional Gain - MC3R ENSG00000124089 CDS Human protein_coding chr20:54823910 chr20:54823914 stopgain 0.584 0 25 hm5C_associated_SNPs_104826 0 0 0 0 0 unknown 0.50023270648361 0.500231644229179 0 0 hm5C_site_57971 DeepMRMD:0;iRNA_m5C:0 57972 chr21 45739585 45739585 1 + C G rs188068991 45739584 + 45739564 45739604 41 GCCCAGGACATGGGGTGGCCCCGCGGGGGCTGGGAAGGCTG GCCCAGGACATGGGGTGGCCCGGCGGGGGCTGGGAAGGCTG < 41bp 0.477663047708333 0.771310927633722 0.45475662 0.7806066 prediction 0.542621855267444 Functional Gain - PFKL ENSG00000141959 intronic Human protein_coding chr21:45739584 chr21:45739585 . . 0 22 hm5C_associated_SNPs_104827 0 0 1 0 0 Ribosome 0.500231643921135 0.500231643921092 0.5612132 0 hm5C_site_57972 DeepMRMD:0.5612132;iRNA_m5C:0 57973 chr8 30977881 30977881 1 + T C rs3087432 30977879 + 30977859 30977899 41 AGGAGATTGGTAGAGCTGGTCGTGATGGACTTCAAAGTTCT AGGAGATTGGTAGAGCTGGTCGCGATGGACTTCAAAGTTCT < 41bp 0.526917336867855 0.798209505395365 0.29781407 0.2971261 prediction 0.54258433705502 Functional Gain - WRN ENSG00000165392 CDS Human protein_coding chr8:30977879 chr8:30977881 synonymous SNV . 0 23 hm5C_associated_SNPs_104828 1 0 1 0 1 Cytosol 0.500231643467664 0.500231643915734 0 8.96140495143527e-10 hm5C_site_57973 DeepMRMD:0;iRNA_m5C:8.96140495143527e-10 Werner syndrome Werner syndrome 57974 chr8 133909927 133909927 1 + C G rs115936153 133909926 + 133909906 133909946 41 ATCAGAGACGCCGCTTTTCCCCGGACGACTCGGCTGGAGCA ATCAGAGACGCCGCTTTTCCCGGGACGACTCGGCTGGAGCA < 41bp 0.54011534772201 0.811403313715932 0.679465 0.9334533 prediction 0.542575931987844 Functional Gain - TG ENSG00000042832 CDS Human protein_coding chr8:133909926 chr8:133909927 nonsynonymous SNV 0.015 1 22 hm5C_associated_SNPs_104829 0 0 0 0 0 Nucleus 0.500231643920849 0.500231643920775 0.5079766 0 hm5C_site_57974 DeepMRMD:0.5079766;iRNA_m5C:0 57975 chrX 47045024 47045024 1 + C G BLCA 47045023 + 47045003 47045043 41 CACCAGCAGCTCTCAGGGCTCCACAAGGTAACAGCGGATGG CACCAGCAGCTCTCAGGGCTCGACAAGGTAACAGCGGATGG < 41bp 0.460824493885783 0.771287865880444 0.28825438 0.24411508 prediction 0.542575731760888 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47045023 chrX:47045024 nonsynonymous SNV 0.853 4 22 hm5C_associated_SNPs_104830 0 0 1 0 1 Ribosome 0.500231643824259 0.500231643921092 0 1.93666860326402e-10 hm5C_site_57975 DeepMRMD:0;iRNA_m5C:1.93666860326402e-10 57976 chr3 195636776 195636776 1 + C G rs79414530 195636775 + 195636755 195636795 41 CTCTCCCCGACTCCCCCGGGCCCGGCCTGCGCCTTCCTGCG CTCTCCCCGACTCCCCCGGGCGCGGCCTGCGCCTTCCTGCG < 41bp 0.490516208157788 0.771283802711563 0.19644058 0.38559067 prediction 0.542567605423126 Functional Gain - TNK2-AS1 ENSG00000224614 ncRNA_exonic Human antisense chr3:195636775 chr3:195636776 . . 0 22 hm5C_associated_SNPs_104831 0 0 0 0 1 unknown 0.500231643921092 0.500231643921095 0 4.21884749357559e-15 hm5C_site_57976 DeepMRMD:0;iRNA_m5C:4.21884749357559e-15 57977 chr2 131487166 131487166 1 + C G rs79683495 131487162 + 131487142 131487182 41 ACCGCCATTGTGCTGCACACCTACCTGGCAGTCATCCATCC ACCGCCATTGTGCTGCACACCTACGTGGCAGTCATCCATCC < 41bp 0.508830926220382 0.780102526362274 0.019250214 0.008246809 prediction 0.542543200283784 Functional Gain - GPR148 ENSG00000173302 CDS Human protein_coding chr2:131487162 chr2:131487166 nonsynonymous SNV 0.150 0 25 hm5C_associated_SNPs_104832 0 0 0 0 0 unknown 0.500231646320146 0.500231776099954 0 2.59559615134464e-07 hm5C_site_57977 DeepMRMD:0;iRNA_m5C:2.59559615134464e-07 57978 chr17 685846 685846 1 + C G rs75116507 685842 + 685822 685862 41 GGAGCAACGAGAGAAACAACCGCTCGAGGAGTCCGCATCCC GGAGCAACGAGAGAAACAACCGCTGGAGGAGTCCGCATCCC < 41bp 0.505103071430757 0.776362932876737 0.10498306 0.22061563 prediction 0.54251972289196 Functional Gain - MRM3 ENSG00000171861 CDS Human protein_coding chr17:685842 chr17:685846 synonymous SNV 0.002 0 25 hm5C_associated_SNPs_104833 0 0 0 0 1 chromatin 0.500231646628335 0.500245561391517 0 2.78295263631545e-05 hm5C_site_57978 DeepMRMD:0;iRNA_m5C:2.78295263631545e-05 57979 chr11 55563321 55563321 1 + T G COAD 55563319 + 55563299 55563339 41 GCAGATAAAAGCATCTTCTACTTTAGCTGCATGATGCAGTA GCAGATAAAAGCATCTTCTACTGTAGCTGCATGATGCAGTA < 41bp 0.45309799758045 0.771254747425007 0.20347932 0.26525044 prediction 0.542509494850014 Functional Gain - OR5D14 ENSG00000186113 CDS Human protein_coding chr11:55563319 chr11:55563321 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_104834 0 0 0 0 0 unknown 0.500231644232988 0.500235649860976 0 8.01125597615915e-06 hm5C_site_57979 DeepMRMD:0;iRNA_m5C:8.01125597615915e-06 57980 chr9 139880107 139880107 1 + C A rs182836102 139880103 + 139880083 139880123 41 TTGTTTTGCAGTGAGGGGTCCAGCCCCTGAGTGCCCGCAGG TTGTTTTGCAGTGAGGGGTCCAGCACCTGAGTGCCCGCAGG < 41bp 0.552630685066283 0.823884794148503 0.28568542 0.7994924 prediction 0.542508218164441 Functional Gain - LCNL1 ENSG00000214402 UTR3 Human protein_coding chr9:139880103 chr9:139880107 . . 0 25 hm5C_associated_SNPs_104835 0 0 0 0 0 exosome 0.500231643921092 0.500231643921103 0.5989848 2.1538326677728e-14 hm5C_site_57980 DeepMRMD:0.5989848;iRNA_m5C:2.1538326677728e-14 57981 chr16 69202770 69202770 1 + T G OV 69202767 + 69202747 69202787 41 GGATGAAAGAACACTCGTGGCAGTAGAACGGCCTCTGGATG GGATGAAAGAACACTCGTGGCAGGAGAACGGCCTCTGGATG < 41bp 0.624734230992438 0.895988237964893 0.22531688 0.7511436 prediction 0.542508013944911 Functional Gain - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69202767 chr16:69202770 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_104836 0 0 1 0 1 Cytosol 0.500231643924974 0.500231638190591 0.5022872 0 hm5C_site_57981 DeepMRMD:0.5022872;iRNA_m5C:0 57982 chr19 39423188 39423188 1 + C G OV 39423187 + 39423167 39423207 41 CGAGTGCGGCTCAGCACTGGCCGCGAGGCCGTCTGCTTCAT CGAGTGCGGCTCAGCACTGGCGGCGAGGCCGTCTGCTTCAT < 41bp 0.557833352983016 0.829083149891195 0.329131 0.87513417 prediction 0.54249959381636 Functional Gain - MRPS12 ENSG00000128626 CDS Human protein_coding chr19:39423187 chr19:39423188 nonsynonymous SNV 0.447 0 22 hm5C_associated_SNPs_104837 0 0 1 0 0 Ribosome 0.500231643388276 0.500231643920722 0.75026834 1.06489106421748e-09 hm5C_site_57982 DeepMRMD:0.75026834;iRNA_m5C:1.06489106421748e-09 57983 chr22 18065397 18065397 1 + C G LUAD 18065396 + 18065376 18065416 41 CTGGCGGCCAACGACTTTTTCCGGCGGCTGCTCATGGAAGA CTGGCGGCCAACGACTTTTTCGGGCGGCTGCTCATGGAAGA < 41bp 0.575978396762277 0.847225877431184 0.8691439 0.92619777 prediction 0.542494961337814 Functional Gain - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18065396 chr22:18065397 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_104838 0 0 0 0 2 exosome 0.500231643921677 0.500231643921172 0.11410774 0 hm5C_site_57983 DeepMRMD:0.11410774;iRNA_m5C:0 57984 chr5 95188399 95188399 1 + C G rs2546196 95188395 + 95188375 95188415 41 ACAGTCCAGGCCATGACAAGCTGGCACCCAGCTCTGCTTCA ACAGTCCAGGCCATGACAAGCTGGGACCCAGCTCTGCTTCA < 41bp 0.514351759621803 0.785593526407392 0.1771768 0.5673698 prediction 0.542483533571178 Functional Gain - LINC01554 ENSG00000251409 ncRNA_exonic Human lincRNA chr5:95188395 chr5:95188399 . . 0 25 hm5C_associated_SNPs_104839 0 0 0 0 1 unknown 0.50023164392173 0.500231616366293 0.1347396 0 hm5C_site_57984 DeepMRMD:0.1347396;iRNA_m5C:0 57985 chr14 20248828 20248828 1 + C A rs2635535 20248824 + 20248804 20248844 41 GGGCTTCGGAGATGTTCTTGCTCACAGTGATGGCCTATGAC GGGCTTCGGAGATGTTCTTGCTCAAAGTGATGGCCTATGAC < 41bp 0.373114674054554 0.771241260139854 0.53965795 0.9196869 prediction 0.542482520279707 Functional Gain - OR4M1 ENSG00000176299 CDS Human protein_coding chr14:20248824 chr14:20248828 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104840 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.7600579 0 hm5C_site_57985 DeepMRMD:0.7600579;iRNA_m5C:0 57986 chr7 102065581 102065581 1 + C G HNSC 102065577 + 102065557 102065597 41 GACAATGTTTGCCACAGCCTCTGCCTGGAACCTGGCTCGTG GACAATGTTTGCCACAGCCTCTGCGTGGAACCTGGCTCGTG < 41bp 0.513882332106936 0.785117317316261 0.13422656 0.24872875 prediction 0.54246997041865 Functional Gain - LOC100630923 ENSG00000128563 CDS Human protein_coding chr7:102065577 chr7:102065581 synonymous SNV . 0 25 hm5C_associated_SNPs_104841 0 0 1 0 0 unknown 0.500231645933911 0.500231651250775 0 1.06337281202684e-08 hm5C_site_57986 DeepMRMD:0;iRNA_m5C:1.06337281202684e-08 57987 chr1 43775130 43775130 1 + C G LUSC 43775126 + 43775106 43775146 41 GGTGCCCCGCTTGGTTCTTGCGGACAGTGGGTTCTGGGAGT GGTGCCCCGCTTGGTTCTTGCGGAGAGTGGGTTCTGGGAGT < 41bp 0.476315744291105 0.771228656141877 0.90027916 0.9269327 prediction 0.542457312283753 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43775126 chr1:43775130 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104842 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.0533070800000002 0 hm5C_site_57987 DeepMRMD:0.0533070800000002;iRNA_m5C:0 57988 chr1 205033503 205033503 1 + C G BLCA 205033502 + 205033482 205033522 41 AGGCGTCTGATCCCCGCGGCCCGCGGGGGAGAGATCCTTAT AGGCGTCTGATCCCCGCGGCCGGCGGGGGAGAGATCCTTAT < 41bp 0.456629188492898 0.771217412356096 0.2337293 0.8568383 prediction 0.542434824712192 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033502 chr1:205033503 nonsynonymous SNV 0.764 3 22 hm5C_associated_SNPs_104843 0 0 0 0 2 exosome 0.500231579453915 0.500231643317744 0.7136766 1.27727657783794e-07 hm5C_site_57988 DeepMRMD:0.7136766;iRNA_m5C:1.27727657783794e-07 57989 chr16 76482693 76482693 1 + C A LUSC 76482689 + 76482669 76482709 41 GCTAAACTGCCTTCCACTTCCACCCTGGTCAATCTCACCCT GCTAAACTGCCTTCCACTTCCACCATGGTCAATCTCACCCT < 41bp 0.351904786161556 0.771213562614935 0.18614516 0.39539924 prediction 0.54242712522987 Functional Gain - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76482689 chr16:76482693 nonsynonymous SNV 0.146 0 25 hm5C_associated_SNPs_104844 0 0 0 0 1 exosome 0.500231643926819 0.500045452020252 0 0 hm5C_site_57989 DeepMRMD:0;iRNA_m5C:0 57990 chr11 113934694 113934694 1 + C G rs35784831 113934693 + 113934673 113934713 41 TCTTCAGCCACCTGCAGGGCCCGAGGAGCCAACTCTGGCTG TCTTCAGCCACCTGCAGGGCCGGAGGAGCCAACTCTGGCTG < 41bp 0.576528582299945 0.847730585564436 0.3364674 0.8765461 prediction 0.542404006528983 Functional Gain - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:113934693 chr11:113934694 synonymous SNV . 0 22 hm5C_associated_SNPs_104845 0 0 0 0 0 Nucleus 0.500602714247938 0.500231644513806 0.7530922 0 hm5C_site_57990 DeepMRMD:0.7530922;iRNA_m5C:0 57991 chr1 202842966 202842966 1 + C A UCEC 202842962 + 202842942 202842982 41 ATGACTGGCACCTGACCAACCACCCCATGGAGATCTTCAGG ATGACTGGCACCTGACCAACCACCACATGGAGATCTTCAGG < 41bp 0.368678106449748 0.77119374784265 0.14865294 0.09828517 prediction 0.5423874956853 Functional Gain - LOC148709 ENSG00000234996;ENSG00000243113 ncRNA_exonic Human other chr1:202842962 chr1:202842966 . . 0 25 hm5C_associated_SNPs_104846 0 0 0 0 0 unknown 0.500231643811159 0.50023152811182 0 0 hm5C_site_57991 DeepMRMD:0;iRNA_m5C:0 57992 chr6 166402815 166402815 1 + C A rs73787126 166402811 + 166402791 166402831 41 CTACCCCAAGACCCGGGCTTCGCGCCAGGTGACAACAGACG CTACCCCAAGACCCGGGCTTCGCGACAGGTGACAACAGACG < 41bp 0.584003517481175 0.855196962120879 0.2514832 0.35594946 prediction 0.542386889279408 Functional Gain - LINC00602 ENSG00000223414;ENSG00000216624 intergenic Human other chr6:166402811 chr6:166402815 . . 0 25 hm5C_associated_SNPs_104847 0 0 0 0 0 unknown 0.500231643921028 0.500231643921056 0 5.55111512312578e-14 hm5C_site_57992 DeepMRMD:0;iRNA_m5C:5.55111512312578e-14 57993 chr7 102553545 102553545 1 + A C rs114626804 102553548 - 102553528 102553568 41 AAGCTCATCTATCTGGACCTCTCTGGCTGCACCCAGGTTTG AAGCTCATCTATCTGGACCTCTCGGGCTGCACCCAGGTTTG < 41bp 0.393124855559924 0.771191438774175 0.12779626 0.14664727 prediction 0.54238287754835 Functional Gain - FBXL13 ENSG00000161040 CDS Human protein_coding chr7:102553548 chr7:102553545 synonymous SNV . 0 24 hm5C_associated_SNPs_104848 0 0 1 0 1 chromatin 0.500231643056919 0.500231643920844 0 1.72784830887451e-09 hm5C_site_57993 DeepMRMD:0;iRNA_m5C:1.72784830887451e-09 57994 chr11 55798280 55798280 1 + C G LUAD 55798279 + 55798259 55798299 41 GCTATGCAGCCATCTGCAACCCACTGCTCTATACTACACTG GCTATGCAGCCATCTGCAACCGACTGCTCTATACTACACTG < 41bp 0.53984944732371 0.811022860142333 0.1622434 0.22725916 prediction 0.542346825637246 Functional Gain - OR5AS1 ENSG00000181785 CDS Human protein_coding chr11:55798279 chr11:55798280 nonsynonymous SNV 0.051 3 22 hm5C_associated_SNPs_104849 0 0 0 0 0 unknown 0.500232894027698 0.500231345809411 0 0 hm5C_site_57994 DeepMRMD:0;iRNA_m5C:0 57995 chr22 25627595 25627595 1 + C G OV 25627591 + 25627571 25627611 41 GTGGGTTGGCTACCAGTACCCCGGCTACCGTGGGCTGCAGT GTGGGTTGGCTACCAGTACCCCGGGTACCGTGGGCTGCAGT < 41bp 0.496168643855072 0.771171048042451 0.32338732 0.9149709 prediction 0.542342096084903 Functional Gain - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25627591 chr22:25627595 synonymous SNV . 0 25 hm5C_associated_SNPs_104850 0 0 1 0 1 exosome 0.50023163820599 0.500231643921093 0.8299418 1.14302045606252e-08 hm5C_site_57995 DeepMRMD:0.8299418;iRNA_m5C:1.14302045606252e-08 57996 chr16 85645089 85645089 1 + C A rs534569279 85645085 + 85645065 85645105 41 CCGCCGGTGAGCTGGCGGGTCGTGCGGGGAAGCAGCACCCC CCGCCGGTGAGCTGGCGGGTCGTGAGGGGAAGCAGCACCCC < 41bp 0.554195830668922 0.825349862343001 0.89980274 0.90782785 prediction 0.542308063348158 Functional Gain - GSE1 ENSG00000131149 UTR5 Human protein_coding chr16:85645085 chr16:85645089 . . 0 25 hm5C_associated_SNPs_104851 0 0 1 0 1 Cytosol 0.500231643921093 0.500231647169406 0.0160502199999999 6.49662701412979e-09 hm5C_site_57996 DeepMRMD:0.0160502199999999;iRNA_m5C:6.49662701412979e-09 57997 chr19 35232140 35232140 1 + T A STAD 35232136 + 35232116 35232156 41 GCTCATCCCTTACACGACATCTGATAAGCCATAGTGGAGAG GCTCATCCCTTACACGACATCTGAAAAGCCATAGTGGAGAG < 41bp 0.582032567610922 0.853175662733806 0.015391916 0.028352976 prediction 0.542286190245768 Functional Gain - ZNF181 ENSG00000197841 CDS Human protein_coding chr19:35232136 chr19:35232140 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_104852 0 0 0 0 0 nucleus 0.500231643920882 0.500231643639561 0 0 hm5C_site_57997 DeepMRMD:0;iRNA_m5C:0 57998 chr8 27530381 27530381 1 + C A rs146516200 27530377 + 27530357 27530397 41 CCCAACACGGACCCAGAGAGCAGCCCTTCCCTGCTCAAAGC CCCAACACGGACCCAGAGAGCAGCACTTCCCTGCTCAAAGC < 41bp 0.583248000456788 0.854374412352738 0.052648604 0.1036087 prediction 0.542252823791901 Functional Gain - SCARA3 ENSG00000168077 UTR3 Human protein_coding chr8:27530377 chr8:27530381 . . 0 25 hm5C_associated_SNPs_104853 0 0 1 0 0 Cytosol 0.500231643923852 0.500231643957909 0 6.81150691406174e-11 hm5C_site_57998 DeepMRMD:0;iRNA_m5C:6.81150691406174e-11 57999 chr11 43345053 43345053 1 + C A HNSC 43345049 + 43345029 43345069 41 TGTCTGGGTTAAAAAGCTTACAGACAGTGAGTGGAAGACAG TGTCTGGGTTAAAAAGCTTACAGAAAGTGAGTGGAAGACAG < 41bp 0.387625899106122 0.771120311103634 0.035488874 0.07969868 prediction 0.542240622207269 Functional Gain - API5 ENSG00000166181 CDS Human protein_coding chr11:43345049 chr11:43345053 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104854 0 0 1 0 1 Ribosome 0.50023459860958 0.500231779221207 0 0 hm5C_site_57999 DeepMRMD:0;iRNA_m5C:0 58000 chr16 28847312 28847312 1 + C A COAD 28847308 + 28847288 28847328 41 CCCCTCACCCTGGGGCTCCCCACCCGCCCCAGGTGATGCTG CCCCTCACCCTGGGGCTCCCCACCAGCCCCAGGTGATGCTG < 41bp 0.634721148887659 0.905835989991917 0.092215836 0.12887427 prediction 0.542229682208516 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847308 chr16:28847312 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_104855 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921215 0 2.4491519923231e-13 hm5C_site_58000 DeepMRMD:0;iRNA_m5C:2.4491519923231e-13 58001 chr4 186350559 186350559 1 + C A rs6856909 186350555 + 186350535 186350575 41 GGTATAGAGAGTACCACCACCAGACGCCACCATGCCTGCGG GGTATAGAGAGTACCACCACCAGAAGCCACCATGCCTGCGG < 41bp 0.568645371219311 0.839743191870385 0.2723475 0.6340106 prediction 0.542195641302148 Functional Gain - C4orf47 ENSG00000205129 UTR5 Human protein_coding chr4:186350555 chr4:186350559 . . 0 25 hm5C_associated_SNPs_104856 0 0 1 0 0 exosome 0.500231644019925 0.500231643324089 0.2680212 0 hm5C_site_58001 DeepMRMD:0.2680212;iRNA_m5C:0 58002 chr19 36206306 36206306 1 + C A LIHC 36206302 + 36206282 36206322 41 GCCCCTTGGTTGGTGGGGGGCCAGCCTGCCCTGTGGAGCAT GCCCCTTGGTTGGTGGGGGGCCAGACTGCCCTGTGGAGCAT < 41bp 0.371516291399101 0.771083037429956 0.4315327 0.7741804 prediction 0.542166074859911 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36206302 chr19:36206306 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_104857 0 0 0 2 0 nucleus 0.500231643813133 0.500231643974117 0.5483608 3.21968007810369e-10 hm5C_site_58002 DeepMRMD:0.5483608;iRNA_m5C:3.21968007810369e-10 58003 chr5 15937179 15937179 1 + T A LUAD 15937175 + 15937155 15937195 41 TTGCAGATCGTGGCCGCCAACTGCTTTGACCTCCAGACGCT TTGCAGATCGTGGCCGCCAACTGCATTGACCTCCAGACGCT < 41bp 0.568923253968862 0.84000591925381 0.14767721 0.46636158 prediction 0.542165330569897 Functional Gain - FBXL7 ENSG00000183580 CDS Human protein_coding chr5:15937175 chr5:15937179 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_104858 0 0 0 0 0 exosome 0.500231642999911 0.50023150977305 0 0 hm5C_site_58003 DeepMRMD:0;iRNA_m5C:0 58004 chr7 116146155 116146155 1 + C A GBM 116146151 + 116146131 116146171 41 GGACGATGCTTCTCTTCTGTCAGCCTGCAACTGAGCCAGGA GGACGATGCTTCTCTTCTGTCAGCATGCAACTGAGCCAGGA < 41bp 0.53112148182874 0.802200739094449 0.41492283 0.5619822 prediction 0.542158514531419 Functional Gain - CAV2 ENSG00000105971 CDS Human protein_coding chr7:116146151 chr7:116146155 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_104859 0 0 1 4 0 Ribosome 0.500231643921094 0.500232312482738 0.1239644 1.33712328942437e-06 hm5C_site_58004 DeepMRMD:0.1239644;iRNA_m5C:1.33712328942437e-06 58005 chr6 52055129 52055129 1 + C A rs17886754 52055125 + 52055105 52055145 41 CATATGGGGAAAATGAAACCCTCCCCAAAATACAAGAAGTT CATATGGGGAAAATGAAACCCTCCACAAAATACAAGAAGTT < 41bp 0.426725824772913 0.771077044789175 0.1444692 0.94249916 prediction 0.54215408957835 Functional Gain - IL17A ENSG00000112115 UTR3 Human protein_coding chr6:52055125 chr6:52055129 . . 0 25 hm5C_associated_SNPs_104860 0 0 0 1 0 unknown 0.500231643921092 0.500231643921092 0.88499832 0 hm5C_site_58005 DeepMRMD:0.88499832;iRNA_m5C:0 58006 chr19 57839579 57839579 1 + C A LUAD 57839575 + 57839555 57839595 41 TTCTTCAGCACCTCATCATCCACACTGGGGAGAAGCCCTAT TTCTTCAGCACCTCATCATCCACAATGGGGAGAAGCCCTAT < 41bp 0.353687278041652 0.771069309915548 0.014560312 0.014880657 prediction 0.542138619831097 Functional Gain - ZNF543 ENSG00000178229 CDS Human protein_coding chr19:57839575 chr19:57839579 nonsynonymous SNV 0.857 3 25 hm5C_associated_SNPs_104861 0 0 1 0 0 Nucleus 0.500231643912454 0.500231643921092 0 1.72766245754019e-11 hm5C_site_58006 DeepMRMD:0;iRNA_m5C:1.72766245754019e-11 58007 chr19 39592142 39592142 1 + C A LUAD 39592138 + 39592118 39592158 41 AGCCGAGAGATGCCCTACACCAACCCGCGAGGGCCTGTCCA AGCCGAGAGATGCCCTACACCAACACGCGAGGGCCTGTCCA < 41bp 0.346078141258724 0.771067248720594 0.024461389 0.024538875 prediction 0.542134497441189 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39592138 chr19:39592142 nonsynonymous SNV 0.387 2 25 hm5C_associated_SNPs_104862 0 0 0 0 2 exosome 0.500231643921092 0.500231643921123 0 6.19504447740837e-14 hm5C_site_58007 DeepMRMD:0;iRNA_m5C:6.19504447740837e-14 58008 chr15 23443558 23443558 1 + T G rs533352418 23443556 + 23443536 23443576 41 CTAACGGCCCAGCTGAGCCTCATGGCTCTCCCTGGGGAAGG CTAACGGCCCAGCTGAGCCTCAGGGCTCTCCCTGGGGAAGG < 41bp 0.430170822398454 0.771065517870612 0.3832541 0.9003947 prediction 0.542131035741224 Functional Gain - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23443556 chr15:23443558 . . 0 23 hm5C_associated_SNPs_104863 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0.8007894 0 hm5C_site_58008 DeepMRMD:0.8007894;iRNA_m5C:0 58009 chr9 130549811 130549811 1 + C A rs34238383 130549807 + 130549787 130549827 41 TCTCACCCAGTTCCCCATTACAGCCTTGCGGGAGATCAAGA TCTCACCCAGTTCCCCATTACAGCATTGCGGGAGATCAAGA < 41bp 0.35211620499472 0.771062462269803 0.121130705 0.16510132 prediction 0.542124924539607 Functional Gain - CDK9 ENSG00000136807 CDS Human protein_coding chr9:130549807 chr9:130549811 synonymous SNV . 0 25 hm5C_associated_SNPs_104864 0 0 1 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921088 0 0 hm5C_site_58009 DeepMRMD:0;iRNA_m5C:0 58010 chr16 3198392 3198392 1 + C G rs73492472 3198388 + 3198368 3198408 41 AGACATCCTGACGGTCTACTCAGCCGCAGAGGGTAAGGAGA AGACATCCTGACGGTCTACTCAGCGGCAGAGGGTAAGGAGA < 41bp 0.524638308021077 0.795700059895758 0.33283013 0.8707103 prediction 0.542123503749363 Functional Gain - CASP16P ENSG00000228146 CDS Human transcribed_unprocessed_pseudogene chr16:3198388 chr16:3198392 synonymous SNV . 0 25 hm5C_associated_SNPs_104865 0 0 0 0 1 unknown 0.500231643921092 0.500231643755113 0.7414206 0 hm5C_site_58010 DeepMRMD:0.7414206;iRNA_m5C:0 58011 chr10 12160849 12160849 1 + T A LAML 12160845 + 12160825 12160865 41 AGCATGACTTTGCCATCATCCGAGTAGAGGAACTCTGCCCC AGCATGACTTTGCCATCATCCGAGAAGAGGAACTCTGCCCC < 41bp 0.58418767447975 0.855247939982132 0.768007 0.84287167 prediction 0.542120531004764 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12160845 chr10:12160849 nonsynonymous SNV 0.908 1 25 hm5C_associated_SNPs_104866 0 0 1 0 1 Endoplasmic reticulum 0.500231643921102 0.500231643921093 0.14972934 0 hm5C_site_58011 DeepMRMD:0.14972934;iRNA_m5C:0 58012 chr7 119914843 119914843 1 + C G LUSC 119914842 + 119914822 119914862 41 AATGTGAGTGGCACCCGCTTCCAGACGTGGCAGGACACCCT AATGTGAGTGGCACCCGCTTCGAGACGTGGCAGGACACCCT < 41bp 0.492004794168173 0.771057880962148 0.4597865 0.31287402 prediction 0.542115761924295 Functional Gain - KCND2 ENSG00000184408 CDS Human protein_coding chr7:119914842 chr7:119914843 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_104867 0 0 0 0 0 exosome 0.500224334825624 0.500180696782412 0 0 hm5C_site_58012 DeepMRMD:0;iRNA_m5C:0 58013 chr19 39963891 39963891 1 + C A MESO 39963887 + 39963867 39963907 41 GACCTCGACCTATGGGAGGACGCCCATGTATGGCTCCCAGA GACCTCGACCTATGGGAGGACGCCAATGTATGGCTCCCAGA < 41bp 0.346601280160096 0.771055935760642 0.13110352 0.88115895 prediction 0.542111871521285 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39963887 chr19:39963891 synonymous SNV . 0 25 hm5C_associated_SNPs_104868 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643919485 0.7623179 0 hm5C_site_58013 DeepMRMD:0.7623179;iRNA_m5C:0 58014 chr6 159178409 159178409 1 + C A rs111645988 159178405 + 159178385 159178425 41 CCTTCCGCTGGCATCCGCTCCGGGCCAAGGTGATGTCTGGT CCTTCCGCTGGCATCCGCTCCGGGACAAGGTGATGTCTGGT < 41bp 0.359502732233292 0.771014881698305 0.86502755 0.89091766 prediction 0.54202976339661 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159178405 chr6:159178409 nonsynonymous SNV 0.970 0 25 hm5C_associated_SNPs_104869 0 0 0 0 1 exosome 0.500231643812645 0.500231580936394 0.0517802199999999 0 hm5C_site_58014 DeepMRMD:0.0517802199999999;iRNA_m5C:0 58015 chr5 72419495 72419495 1 + C G rs146940706 72419494 + 72419474 72419514 41 GGTCAGCAGATGGACCCCGACCGAGCCTTCATCTGTGGAGA GGTCAGCAGATGGACCCCGACGGAGCCTTCATCTGTGGAGA < 41bp 0.449878080922052 0.771009824890189 0.37454063 0.6728266 prediction 0.542019649780378 Functional Gain - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72419494 chr5:72419495 nonsynonymous SNV 0.300 0 22 hm5C_associated_SNPs_104870 0 0 0 0 0 Ribosome 0.500231348301498 0.50023164392116 0.3456532 5.91239323277648e-07 hm5C_site_58015 DeepMRMD:0.3456532;iRNA_m5C:5.91239323277648e-07 58016 chr1 112002182 112002182 1 + T C UCEC 112002180 + 112002160 112002200 41 TATCATATATCTGTGCAGAACATGATGCGTCGAAAGGAACA TATCATATATCTGTGCAGAACACGATGCGTCGAAAGGAACA < 41bp 0.506682111722412 0.777688497177721 0.055931717 0.02465108 prediction 0.542012770910619 Functional Gain - ATP5F1 ENSG00000116459 CDS Human protein_coding chr1:112002180 chr1:112002182 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_104871 0 0 1 0 0 Ribosome 0.500232010009626 0.500231670137786 0 0 hm5C_site_58016 DeepMRMD:0;iRNA_m5C:0 58017 chrX 37028810 37028810 1 + C A LUAD 37028806 + 37028786 37028826 41 AGACTGGAGTGTCCCATCTCCACCCAGAGCTTCCCAAGCCT AGACTGGAGTGTCCCATCTCCACCAAGAGCTTCCCAAGCCT < 41bp 0.357718394379311 0.7709985817965 0.13848376 0.067172945 prediction 0.541997163592999 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37028806 chrX:37028810 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104872 0 0 0 0 0 unknown 0.500231645018111 0.500231649168776 0 8.3013314000624e-09 hm5C_site_58017 DeepMRMD:0;iRNA_m5C:8.3013314000624e-09 58018 chr12 130648388 130648388 1 + C A STAD 130648384 + 130648364 130648404 41 GACAGCGGCCAGCTCTATGTCATCCAGGAGGGACTGGAGAG GACAGCGGCCAGCTCTATGTCATCAAGGAGGGACTGGAGAG < 41bp 0.367971771527932 0.770985130031746 0.20482355 0.21000978 prediction 0.541970260063493 Functional Gain - FZD10 ENSG00000111432 CDS Human protein_coding chr12:130648384 chr12:130648388 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_104873 0 0 0 0 0 exosome 0.500231649006654 0.500231643948035 0 0 hm5C_site_58018 DeepMRMD:0;iRNA_m5C:0 58019 chr1 154956225 154956225 1 + T G UCEC 154956222 + 154956202 154956242 41 AGAGGCAGGAACAAAGGAGTCGCTTGTCAAGGATCTGGTTA AGAGGCAGGAACAAAGGAGTCGCGTGTCAAGGATCTGGTTA < 41bp 0.397073263060574 0.770982777108444 0.12736449 0.39250717 prediction 0.541965554216888 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154956222 chr1:154956225 nonsynonymous SNV 0.114 1 24 hm5C_associated_SNPs_104874 0 0 1 0 0 Cytosol 0.500231602076069 0.500235554344326 0 7.90453651378087e-06 hm5C_site_58019 DeepMRMD:0;iRNA_m5C:7.90453651378087e-06 58020 chr10 47087622 47087622 1 + C A STAD 47087618 + 47087598 47087638 41 TGGCCTTTGCTGTGCTCTGGCTGCCTCTGCATGTGTTCAAC TGGCCTTTGCTGTGCTCTGGCTGCATCTGCATGTGTTCAAC < 41bp 0.356294220626348 0.770975768629246 0.062844485 0.1181916 prediction 0.541951537258491 Functional Gain - NPY4R;NPY4R2 ENSG00000204174 CDS Human protein_coding chr10:47087618 chr10:47087622 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_104875 0 0 0 0 0 unknown 0.500238071734918 0.500354002201766 0 0.000231860933695982 hm5C_site_58020 DeepMRMD:0;iRNA_m5C:0.000231860933695982 58021 chr13 31480912 31480912 1 + T G STAD 31480910 + 31480890 31480930 41 CTCGACGGGCAGCTCTACCGCCTCAGCAGCTACATCAAGAG CTCGACGGGCAGCTCTACCGCCGCAGCAGCTACATCAAGAG < 41bp 0.435649039815125 0.770974973346961 0.085170954 0.3047711 prediction 0.541949946693923 Functional Gain - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31480910 chr13:31480912 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_104876 0 0 0 0 1 exosome 0.50023164662062 0.500231643010426 0 0 hm5C_site_58021 DeepMRMD:0;iRNA_m5C:0 58022 chrX 40483177 40483177 1 + C A rs780374061 40483173 + 40483153 40483193 41 TAAAGCCCGCGACCCTCCGGCTACCGCCGCCGCTGCCACCA TAAAGCCCGCGACCCTCCGGCTACAGCCGCCGCTGCCACCA < 41bp 0.631202570476156 0.902157496098558 0.41377562 0.9024604 prediction 0.541909851244805 Functional Gain - MPC1L ENSG00000238205 downstream Human protein_coding chrX:40483173 chrX:40483177 . . 0 25 hm5C_associated_SNPs_104877 0 0 0 0 0 exosome 0.500231643921092 0.500231643921095 0.8049208 5.32907051820075e-15 hm5C_site_58022 DeepMRMD:0.8049208;iRNA_m5C:5.32907051820075e-15 58023 chr10 13151216 13151216 1 + C G LUAD 13151215 + 13151195 13151235 41 CCCCACCTGGCCCACCCAAACCTGGACACGTTTACCCCGGA CCCCACCTGGCCCACCCAAACGTGGACACGTTTACCCCGGA < 41bp 0.464346900075268 0.770948029044022 0.4043489 0.87444454 prediction 0.541896058088044 Functional Gain - OPTN ENSG00000123240 CDS Human protein_coding chr10:13151215 chr10:13151216 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_104878 0 0 1 0 1 nucleoplasm 0.500231643921098 0.500231643921092 0.74888908 0 hm5C_site_58023 DeepMRMD:0.74888908;iRNA_m5C:0 58024 chr11 280512 280512 1 + C G rs563626864 280508 + 280488 280528 41 CTGATCCTGGACCAGTGCCCCGACCGCGGCGCGCCGGTGCC CTGATCCTGGACCAGTGCCCCGACGGCGGCGCGCCGGTGCC < 41bp 0.491312250238389 0.770940683588146 0.1805881 0.5479844 prediction 0.541881367176293 Functional Gain - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:280508 chr11:280512 nonsynonymous SNV 0.019 2 25 hm5C_associated_SNPs_104879 0 0 0 0 0 chromatin 0.500231074972717 0.500231496677448 0.0959688000000001 8.43409461603883e-07 hm5C_site_58024 DeepMRMD:0.0959688000000001;iRNA_m5C:8.43409461603883e-07 58025 chr15 68118364 68118364 1 + C A UCEC 68118360 + 68118340 68118380 41 CTCCAAGCAGGAGCTGCAGCCGTACTCGGGCTCCAGCGCTC CTCCAAGCAGGAGCTGCAGCCGTAATCGGGCTCCAGCGCTC < 41bp 0.37610249256781 0.770939656519792 0.87098014 0.8061639 prediction 0.541879313039584 Functional Gain - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68118360 chr15:68118364 stopgain 0.994 1 25 hm5C_associated_SNPs_104880 0 0 0 0 1 exosome 0.498447596578496 0.500177409625322 0 0.000354819250643956 hm5C_site_58025 DeepMRMD:0;iRNA_m5C:0.000354819250643956 58026 chr5 138163226 138163226 1 + T C DLBC 138163224 + 138163204 138163244 41 AAACAAATCATTGTGGACCCCTTGAGCTTCAGCGAGGAGCG AAACAAATCATTGTGGACCCCTCGAGCTTCAGCGAGGAGCG < 41bp 0.538037186238995 0.808959852770044 0.08825612 0.4052881 prediction 0.541845333062098 Functional Gain - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138163224 chr5:138163226 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_104881 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921275 0 3.64375196681976e-13 hm5C_site_58026 DeepMRMD:0;iRNA_m5C:3.64375196681976e-13 58027 chr3 126916014 126916014 1 + C A LUAD 126916010 + 126915990 126916030 41 CCAGGTGGGATGCTGGACTCCAGCCAGCTCAGCCCCCAGGG CCAGGTGGGATGCTGGACTCCAGCAAGCTCAGCCCCCAGGG < 41bp 0.61890856727852 0.889828521286912 0.25798988 0.20163417 prediction 0.541839908016783 Functional Gain - C3orf56 ENSG00000214324 CDS Human lincRNA chr3:126916010 chr3:126916014 synonymous SNV . 0 25 hm5C_associated_SNPs_104882 0 0 0 0 0 unknown 0.500231643985485 0.500231644097829 0 2.24686713679034e-10 hm5C_site_58027 DeepMRMD:0;iRNA_m5C:2.24686713679034e-10 58028 chr6 10726190 10726190 1 + C A COAD 10726186 + 10726166 10726206 41 CTGCTCTTTGGCAGTCTAGCCGGCCTGGGTGCTTACCAGCT CTGCTCTTTGGCAGTCTAGCCGGCATGGGTGCTTACCAGCT < 41bp 0.644970709606658 0.915885948007007 0.6745941 0.8768221 prediction 0.541830476800698 Functional Gain - TMEM14C ENSG00000111843 CDS Human protein_coding chr6:10726186 chr6:10726190 nonsynonymous SNV 0.585 4 25 hm5C_associated_SNPs_104883 0 0 1 0 2 Ribosome 0.500231643921253 0.50023164392479 0.404456 7.07500724672627e-12 hm5C_site_58028 DeepMRMD:0.404456;iRNA_m5C:7.07500724672627e-12 58029 chr3 122003456 122003456 1 + C A LUAD 122003452 + 122003432 122003472 41 AGCTCACGCTTTCAAGGTGGCTGCCCGGGCCACGCTGCGCC AGCTCACGCTTTCAAGGTGGCTGCACGGGCCACGCTGCGCC < 41bp 0.362259781479214 0.770915128809084 0.57776 0.93218637 prediction 0.541830257618169 Functional Gain - CASR ENSG00000036828 CDS Human protein_coding chr3:122003452 chr3:122003456 synonymous SNV . 0 25 hm5C_associated_SNPs_104884 0 0 0 0 0 exosome 0.500231643921257 0.500231643921111 0.70885274 0 hm5C_site_58029 DeepMRMD:0.70885274;iRNA_m5C:0 58030 chr16 2278405 2278405 1 + C G LGG 2278404 + 2278384 2278424 41 GTGCACAGATGCGGCCGCTGCCAGGCAGAGTTCACCGCCTT GTGCACAGATGCGGCCGCTGCGAGGCAGAGTTCACCGCCTT < 41bp 0.567927681093786 0.838841146279342 0.5467209 0.765658 prediction 0.541826930371111 Functional Gain - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2278404 chr16:2278405 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_104885 0 0 1 0 1 chromatin 0.500231643917165 0.500231614336085 0.4378742 0 hm5C_site_58030 DeepMRMD:0.4378742;iRNA_m5C:0 58031 chr4 187078819 187078819 1 + C G rs2276923 187078815 + 187078795 187078835 41 CGATGGAGCCAGTGGCCCCCCGTCCGGACACGCCGAGGCTC CGATGGAGCCAGTGGCCCCCCGTCGGGACACGCCGAGGCTC < 41bp 0.523121428584844 0.79402672999794 0.20604602 0.08254489 prediction 0.541810602826191 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187078815 chr4:187078819 synonymous SNV . 0 25 hm5C_associated_SNPs_104886 0 0 0 0 1 Cytosol 0.500231643921668 0.500231643936393 0 2.94504420850217e-11 hm5C_site_58031 DeepMRMD:0;iRNA_m5C:2.94504420850217e-11 58032 chr9 134165467 134165467 1 + C A BLCA 134165463 + 134165443 134165483 41 CTGAGTTCCTGTCCCTGAACCAGCCCCCCAAGGGGGGCCCG CTGAGTTCCTGTCCCTGAACCAGCACCCCAAGGGGGGCCCG < 41bp 0.632332163183217 0.903237168576876 0.36857796 0.48515356 prediction 0.541810010787317 Functional Gain - PLPP7 ENSG00000160539 CDS Human protein_coding chr9:134165463 chr9:134165467 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_104887 0 0 0 0 0 exosome 0.500231643921088 0.500231643920727 0 0 hm5C_site_58032 DeepMRMD:0;iRNA_m5C:0 58033 chr3 137483941 137483941 1 + C G HNSC 137483937 + 137483917 137483957 41 CTACCTGGGCGACACGGACCCGCTCAAGGCGGCTGGCCTGC CTACCTGGGCGACACGGACCCGCTGAAGGCGGCTGGCCTGC < 41bp 0.504888122615633 0.775789361466947 0.3781031 0.8576666 prediction 0.541802477702628 Functional Gain - SOX14 ENSG00000168875 CDS Human protein_coding chr3:137483937 chr3:137483941 synonymous SNV . 0 25 hm5C_associated_SNPs_104888 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0.7153332 0 hm5C_site_58033 DeepMRMD:0.7153332;iRNA_m5C:0 58034 chr17 78093353 78093353 1 + C G rs8132 78093352 + 78093332 78093372 41 TCCCTAGATCGCACTGTGGGCCGGGGCCCTGGAGGGCTGCT TCCCTAGATCGCACTGTGGGCGGGGGCCCTGGAGGGCTGCT < 41bp 0.518071616178174 0.788964343716935 0.8742437 0.8991124 prediction 0.541785455077523 Functional Gain - GAA ENSG00000171298 UTR3 Human protein_coding chr17:78093352 chr17:78093353 . . 0 22 hm5C_associated_SNPs_104889 0 0 1 0 0 Endoplasmic reticulum 0.500231644085074 0.500231643921209 0.0497374000000002 0 hm5C_site_58034 DeepMRMD:0.0497374000000002;iRNA_m5C:0 58035 chr17 72305492 72305492 1 + A C BLCA 72305494 - 72305474 72305514 41 GTGGGATCGCACTGCTCGAACATGAAGTCCCAGATATCCAG GTGGGATCGCACTGCTCGAACAGGAAGTCCCAGATATCCAG < 41bp 0.595134123525201 0.866021264639332 0.13688946 0.5378037 prediction 0.541774282228261 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72305494 chr17:72305492 nonsynonymous SNV 0.942 0 23 hm5C_associated_SNPs_104890 0 0 0 0 1 exosome 0.500231646614781 0.500264921167647 0.0756074 6.65491057307843e-05 hm5C_site_58035 DeepMRMD:0.0756074;iRNA_m5C:6.65491057307843e-05 58036 chr9 5468155 5468155 1 + C G rs141270479 5468151 + 5468131 5468171 41 ACTTCTGAACAAGGAGCCTCCAAGCAAATCATCCATTGCTC ACTTCTGAACAAGGAGCCTCCAAGGAAATCATCCATTGCTC < 41bp 0.536811630597837 0.807676968167586 0.035140872 0.07320747 prediction 0.541730675139499 Functional Gain - CD274 ENSG00000120217 UTR3 Human protein_coding chr9:5468151 chr9:5468155 . . 0 25 hm5C_associated_SNPs_104891 0 0 0 0 0 exosome 0.500231642300495 0.500231643921093 0 3.24119664441014e-09 hm5C_site_58036 DeepMRMD:0;iRNA_m5C:3.24119664441014e-09 58037 chr4 1222589 1222589 1 + C G rs147730569 1222585 + 1222565 1222605 41 GCCAGGGAACCTGAGACCTGCAGGCCCGGGGATGCAGGTAG GCCAGGGAACCTGAGACCTGCAGGGCCGGGGATGCAGGTAG < 41bp 0.517967126672928 0.78881591120093 0.866622 0.9080992 prediction 0.541697569056004 Functional Gain - CTBP1 ENSG00000159692 intronic Human protein_coding chr4:1222585 chr4:1222589 . . 0 25 hm5C_associated_SNPs_104892 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643328533 0.0829544 0 hm5C_site_58037 DeepMRMD:0.0829544;iRNA_m5C:0 58038 chr12 56532198 56532198 1 + T A STAD 56532194 + 56532174 56532214 41 GTGCCCCTCCACAGGTGCTGCAGGTGAATAGTTTGATCCAG GTGCCCCTCCACAGGTGCTGCAGGAGAATAGTTTGATCCAG < 41bp 0.560067404164828 0.830912035394551 0.7798028 0.7195537 prediction 0.541689262459447 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532194 chr12:56532198 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_104893 0 0 0 0 2 Endoplasmic reticulum 0.500231632916281 0.500229837559294 0 0 hm5C_site_58038 DeepMRMD:0;iRNA_m5C:0 58039 chr11 55110733 55110733 1 + T G OV 55110731 + 55110711 55110751 41 TCCTGGGCCTCACTCAAGATCCTGATGTGAAAAAAACATTA TCCTGGGCCTCACTCAAGATCCGGATGTGAAAAAAACATTA < 41bp 0.469400025423564 0.770844001766312 0.039225996 0.22857523 prediction 0.541688003532623 Functional Gain - OR4A16 ENSG00000181961 CDS Human protein_coding chr11:55110731 chr11:55110733 synonymous SNV . 0 23 hm5C_associated_SNPs_104894 0 0 0 0 0 unknown 0.500231654894817 0.500237973613956 0 1.26374382771743e-05 hm5C_site_58039 DeepMRMD:0;iRNA_m5C:1.26374382771743e-05 58040 chr4 37592147 37592147 1 + T A CESC 37592143 + 37592123 37592163 41 TGCTGGCCTCAGAAGGGACCCAAGTCATGAGAAATGGAGAC TGCTGGCCTCAGAAGGGACCCAAGACATGAGAAATGGAGAC < 41bp 0.481297885657686 0.770829902451511 0.33912772 0.4275949 prediction 0.541659804903023 Functional Gain - C4orf19 ENSG00000154274 CDS Human protein_coding chr4:37592143 chr4:37592147 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_104895 0 0 0 0 0 Ribosome 0.500231643921083 0.500231643921081 0 0 hm5C_site_58040 DeepMRMD:0;iRNA_m5C:0 Atrial fibrillation 58041 chr3 36527679 36527679 1 + C A THCA 36527675 + 36527655 36527695 41 GAGACCCTCCGCTTCGGCACCTCCCTGGCCCAGAGGACAAA GAGACCCTCCGCTTCGGCACCTCCATGGCCCAGAGGACAAA < 41bp 0.327010330925805 0.77082868962565 0.01213634 0.968964 prediction 0.5416573792513 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36527675 chr3:36527679 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_104896 0 0 0 0 2 exosome 0.500231643921092 0.500231643893694 0.937928 0 hm5C_site_58041 DeepMRMD:0.937928;iRNA_m5C:0 58042 chr11 55944656 55944656 1 + C A HNSC 55944652 + 55944632 55944672 41 ACATTCCTTCACTGCTAAAGCTGTCATGTTCTGACACCTCC ACATTCCTTCACTGCTAAAGCTGTAATGTTCTGACACCTCC < 41bp 0.379799219868232 0.770802799270675 0.106013685 0.1420548 prediction 0.541605598541349 Functional Gain - OR5J2 ENSG00000174957 CDS Human protein_coding chr11:55944652 chr11:55944656 stopgain 0.006 0 25 hm5C_associated_SNPs_104897 0 0 0 0 0 unknown 0.500260898155501 0.500231645967507 0 0 hm5C_site_58042 DeepMRMD:0;iRNA_m5C:0 58043 chr2 232011036 232011036 1 + T C LIHC 232011034 + 232011014 232011054 41 GCACTCATAGCTTCAGCTCTCATCATGATCCAGCAGACTGA GCACTCATAGCTTCAGCTCTCACCATGATCCAGCAGACTGA < 41bp 0.534217002116242 0.805002830495775 0.026316226 0.028691173 prediction 0.541571656759067 Functional Gain - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232011034 chr2:232011036 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_104898 0 0 1 0 2 Nucleus 0.500231421113896 0.500231007980063 0 0 hm5C_site_58043 DeepMRMD:0;iRNA_m5C:0 58044 chr11 74915760 74915760 1 + C A rs575978601 74915756 + 74915736 74915776 41 ACTAAATTGCTGTGTGACTTCAGGCAAGACATTGATCCTCT ACTAAATTGCTGTGTGACTTCAGGAAAGACATTGATCCTCT < 41bp 0.416886910298355 0.770782217183676 0.88844895 0.9191998 prediction 0.541564434367352 Functional Gain - SLCO2B1 ENSG00000137491 UTR3 Human protein_coding chr11:74915756 chr11:74915760 . . 0 25 hm5C_associated_SNPs_104899 0 0 0 1 0 cytosol 0.500232161536281 0.500233775194487 0.0615017 3.22731641211327e-06 hm5C_site_58044 DeepMRMD:0.0615017;iRNA_m5C:3.22731641211327e-06 58045 chrX 86877351 86877351 1 + T C LUAD 86877349 + 86877329 86877369 41 CTCTAATGCAGTGGGTGGGGCATGATGTGCAGAATAGGCAA CTCTAATGCAGTGGGTGGGGCACGATGTGCAGAATAGGCAA < 41bp 0.522730205460032 0.793503624161318 0.38508552 0.14241982 prediction 0.541546837402571 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86877349 chrX:86877351 synonymous SNV . 0 23 hm5C_associated_SNPs_104900 0 0 0 0 1 chromatin 0.500231643921091 0.500231643912013 0 0 hm5C_site_58045 DeepMRMD:0;iRNA_m5C:0 58046 chr15 64422191 64422191 1 + T C UCEC 64422189 + 64422169 64422209 41 TTCAACAAAGCCACAGATGCCGTCAGCAAAATGACCATCAA TTCAACAAAGCCACAGATGCCGCCAGCAAAATGACCATCAA < 41bp 0.486416868798803 0.770769318136637 0.054855347 0.07719159 prediction 0.541538636273273 Functional Gain - SNX1 ENSG00000028528 CDS Human protein_coding chr15:64422189 chr15:64422191 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_104901 0 0 1 0 2 Ribosome 0.500231644186619 0.500231644221638 0 7.00390856422928e-11 hm5C_site_58046 DeepMRMD:0;iRNA_m5C:7.00390856422928e-11 58047 chr11 103908693 103908693 1 + C A rs144680864 103908689 + 103908669 103908709 41 AAGTGGGCAAGATGAGTCTTCGGACAAGGAAATTACACATT AAGTGGGCAAGATGAGTCTTCGGAAAAGGAAATTACACATT < 41bp 0.382724244403592 0.770768028933297 0.36031604 0.41006708 prediction 0.541536057866595 Functional Gain - DDI1 ENSG00000170967 CDS Human protein_coding chr11:103908689 chr11:103908693 nonsynonymous SNV 0.049 1 25 hm5C_associated_SNPs_104902 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58047 DeepMRMD:0;iRNA_m5C:0 58048 chr9 107457184 107457184 1 + C G LUAD 107457183 + 107457163 107457203 41 ACTATGTGGCCATCTGCAACCCACTGAGGTACTCCATCATC ACTATGTGGCCATCTGCAACCGACTGAGGTACTCCATCATC < 41bp 0.557361832030284 0.828124603184942 0.057815313 0.32709986 prediction 0.541525542309315 Functional Gain - OR13D1 ENSG00000179055 CDS Human protein_coding chr9:107457183 chr9:107457184 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_104903 0 0 0 0 0 unknown 0.500231643879611 0.500231643921092 0 8.29634139165591e-11 hm5C_site_58048 DeepMRMD:0;iRNA_m5C:8.29634139165591e-11 58049 chr7 44150570 44150570 1 + T A LUSC 44150566 + 44150546 44150586 41 TGCTGAGTGAGCTCCCAGAGCCGGTGGTGGCTCGTTTCATC TGCTGAGTGAGCTCCCAGAGCCGGAGGTGGCTCGTTTCATC < 41bp 0.450543626672273 0.770759791682154 0.5181603 0.8099475 prediction 0.541519583364308 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44150566 chr7:44150570 nonsynonymous SNV 0.900 3 25 hm5C_associated_SNPs_104904 0 0 0 0 1 Endoplasmic reticulum 0.500231643930494 0.500231643920909 0.5835744 0 hm5C_site_58049 DeepMRMD:0.5835744;iRNA_m5C:0 58050 chr11 59211213 59211213 1 + C A STAD 59211209 + 59211189 59211229 41 ACCTCCCACCAGTCCTGGCTCTGTCTTGCTCTGACACCTTC ACCTCCCACCAGTCCTGGCTCTGTATTGCTCTGACACCTTC < 41bp 0.368131528638976 0.770742601965516 0.04696095 0.034307152 prediction 0.541485203931032 Functional Gain - OR5A1 ENSG00000172320 CDS Human protein_coding chr11:59211209 chr11:59211213 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_104905 0 0 0 0 0 unknown 0.500231643921092 0.500231643920782 0 0 hm5C_site_58050 DeepMRMD:0;iRNA_m5C:0 58051 chr5 154193679 154193679 1 + T G rs548301464 154193677 + 154193657 154193697 41 AAAGCTCCTTAGCCCTGGGGCTTGAGGGGGGAAAGGGGTAG AAAGCTCCTTAGCCCTGGGGCTGGAGGGGGGAAAGGGGTAG < 41bp 0.448215880013726 0.770734322416389 0.74983746 0.7426561 prediction 0.541468644832777 Functional Gain - LARP1 ENSG00000155506 UTR3 Human protein_coding chr5:154193677 chr5:154193679 . . 0 23 hm5C_associated_SNPs_104906 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_58051 DeepMRMD:0;iRNA_m5C:0 58052 chr5 72419566 72419566 1 + C A UCEC 72419562 + 72419542 72419582 41 CTTTGGGTTTCTGTTCTTGACAAGCGGCATGCTCATCAGCG CTTTGGGTTTCTGTTCTTGACAAGAGGCATGCTCATCAGCG < 41bp 0.643722672708405 0.914455949630851 0.25663772 0.4952964 prediction 0.541466553844893 Functional Gain - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72419562 chr5:72419566 nonsynonymous SNV 0.922 4 25 hm5C_associated_SNPs_104907 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58052 DeepMRMD:0;iRNA_m5C:0 58053 chr7 154862988 154862988 1 + G T LUSC 154862992 - 154862972 154863012 41 TGGCCGTCACGTTCCAGATGCTGGCCGTGCAGCAAAGCACG TGGCCGTCACGTTCCAGATGCTGGACGTGCAGCAAAGCACG < 41bp 0.634048020647808 0.904769751634066 0.2689548 0.77986115 prediction 0.541443461972517 Functional Gain - HTR5A ENSG00000157219;ENSG00000220575 CDS Human other chr7:154862992 chr7:154862988 nonsynonymous SNV 0.949 3 25 hm5C_associated_SNPs_104908 0 0 0 0 0 exosome 0.500241078325417 0.500266176855003 0.5597223 5.01970591719747e-05 hm5C_site_58053 DeepMRMD:0.5597223;iRNA_m5C:5.01970591719747e-05 58054 chr19 8322868 8322868 1 + C G SKCM 8322864 + 8322844 8322884 41 ACCCGACTGGTCCTCTTTCCCACCCAGTGAGTCAGCCCTCC ACCCGACTGGTCCTCTTTCCCACCGAGTGAGTCAGCCCTCC < 41bp 0.529748961265979 0.800451897537955 0.09158319 0.22532383 prediction 0.541405872543951 Functional Gain - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8322864 chr19:8322868 nonsynonymous SNV 0.223 1 25 hm5C_associated_SNPs_104909 0 0 1 0 1 chromatin 0.500231644208217 0.500231644514698 0 6.12963013679746e-10 hm5C_site_58054 DeepMRMD:0;iRNA_m5C:6.12963013679746e-10 58055 chr19 8841592 8841592 1 + C A THCA 8841588 + 8841568 8841608 41 TACTTCCTGCTCAGCCAGCTCTCCCTGTTTGACATTGGCTG TACTTCCTGCTCAGCCAGCTCTCCATGTTTGACATTGGCTG < 41bp 0.361115922615155 0.770697266617196 0.2005625 0.96335125 prediction 0.541394533234392 Functional Gain - OR2Z1 ENSG00000181733 CDS Human protein_coding chr19:8841588 chr19:8841592 nonsynonymous SNV 0.019 3 25 hm5C_associated_SNPs_104910 0 0 0 0 0 unknown 0.50023164680351 0.500231645255458 0.9267025 0 hm5C_site_58055 DeepMRMD:0.9267025;iRNA_m5C:0 58056 chr7 142566360 142566360 1 + C A UCEC 142566356 + 142566336 142566376 41 GCCGAAAGCCTGCAGATGACCTTCCTGGGCCGGGCCGCAGT GCCGAAAGCCTGCAGATGACCTTCATGGGCCGGGCCGCAGT < 41bp 0.347577493951756 0.770696962642438 0.16515616 0.33759245 prediction 0.541393925284877 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566356 chr7:142566360 nonsynonymous SNV 0.868 2 25 hm5C_associated_SNPs_104911 0 0 0 0 0 Endoplasmic reticulum 0.500231643993126 0.50023164406197 0 1.37686084755728e-10 hm5C_site_58056 DeepMRMD:0;iRNA_m5C:1.37686084755728e-10 58057 chr15 100247002 100247002 1 + C A OV 100246998 + 100246978 100247018 41 TACCCCAGTCGTGTCTGTGACAACCCCAAGCTTGCCTCCGC TACCCCAGTCGTGTCTGTGACAACACCAAGCTTGCCTCCGC < 41bp 0.357710815247613 0.770696214239148 0.088893265 0.23528516 prediction 0.541392428478297 Functional Gain - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100246998 chr15:100247002 synonymous SNV . 0 25 hm5C_associated_SNPs_104912 0 0 1 0 2 Endoplasmic reticulum 0.500231643933277 0.500231643921092 0 0 hm5C_site_58057 DeepMRMD:0;iRNA_m5C:0 58058 chr2 220073248 220073248 1 + C G COAD 220073244 + 220073224 220073264 41 GTTGGATGGACAGAAACAAACACACAGAGAGTGAAGTCCAA GTTGGATGGACAGAAACAAACACAGAGAGAGTGAAGTCCAA < 41bp 0.522968218821763 0.793646657763394 0.04551044 0.16752455 prediction 0.541356877883262 Functional Gain - ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220073244 chr2:220073248 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104913 0 0 0 0 0 Ribosome 0.500230916675633 0.500231647889763 0 1.46242825893594e-06 hm5C_site_58058 DeepMRMD:0;iRNA_m5C:1.46242825893594e-06 58059 chr4 37246704 37246704 1 + C A rs554012646 37246700 + 37246680 37246720 41 CCAGAGGGCGATGTGGCCGGCCGGCGCGGGCACCAAGCTGC CCAGAGGGCGATGTGGCCGGCCGGAGCGGGCACCAAGCTGC < 41bp 0.59982866541844 0.870490494962708 0.68235147 0.8839849 prediction 0.541323659088536 Functional Gain - NWD2 ENSG00000174145 CDS Human protein_coding chr4:37246700 chr4:37246704 synonymous SNV . 0 25 hm5C_associated_SNPs_104914 0 0 0 0 0 exosome 0.500231479928174 0.500231654455539 0.40326686 3.49054730230947e-07 hm5C_site_58059 DeepMRMD:0.40326686;iRNA_m5C:3.49054730230947e-07 58060 chr12 109870782 109870782 1 + T C COAD 109870780 + 109870760 109870800 41 GTGGAACGGCTGATCAAGTACATCGGCTACAAACCCGAGGA GTGGAACGGCTGATCAAGTACACCGGCTACAAACCCGAGGA < 41bp 0.497388875467105 0.770652335240559 0.35006595 0.6073582 prediction 0.541304670481118 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109870780 chr12:109870782 nonsynonymous SNV 0.954 1 23 hm5C_associated_SNPs_104915 0 0 0 0 2 exosome 0.500231644202657 0.500231643686254 0.2147164 0 hm5C_site_58060 DeepMRMD:0.2147164;iRNA_m5C:0 58061 chr11 123777502 123777502 1 + C A rs61907183 123777498 + 123777478 123777518 41 ATGCTGGCAGCCATGGCCTGCGATCGCTACGTGGCCATCTG ATGCTGGCAGCCATGGCCTGCGATAGCTACGTGGCCATCTG < 41bp 0.400625646321849 0.770642562506773 0.2059153 0.2819626 prediction 0.541285125013547 Functional Gain - OR8D4 ENSG00000181518 CDS Human protein_coding chr11:123777498 chr11:123777502 nonsynonymous SNV 0.765 2 25 hm5C_associated_SNPs_104916 0 0 0 0 0 unknown 0.500242622965278 0.500231643917751 0 0 hm5C_site_58061 DeepMRMD:0;iRNA_m5C:0 58062 chr17 72764749 72764749 1 + C G rs199563744 72764748 + 72764728 72764768 41 AACGCAGCAGCAAACGGGCCCCGCAGATGGACTGGAGCAAG AACGCAGCAGCAAACGGGCCCGGCAGATGGACTGGAGCAAG < 41bp 0.47105220872949 0.770641741255377 0.07060683 0.39669177 prediction 0.541283482510754 Functional Gain - SLC9A3R1 ENSG00000109062 CDS Human protein_coding chr17:72764748 chr17:72764749 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_104917 0 0 1 0 0 Ribosome 0.500231643920385 0.500231643921092 0 1.41420208876752e-12 hm5C_site_58062 DeepMRMD:0;iRNA_m5C:1.41420208876752e-12 58063 chr11 86662538 86662538 1 + A G UCEC 86662540 - 86662520 86662560 41 TGTTCAAAATTCGGTCAAATCTTCAAAAGGATGGGACAAAG TGTTCAAAATTCGGTCAAATCTCCAAAAGGATGGGACAAAG < 41bp 0.482488204278226 0.770621281539432 0.3057412 0.975376 prediction 0.541242563078864 Functional Gain - FZD4 ENSG00000174804 CDS Human protein_coding chr11:86662540 chr11:86662538 synonymous SNV . 0 23 hm5C_associated_SNPs_104918 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921462 0.950752 7.39186489795429e-13 hm5C_site_58063 DeepMRMD:0.950752;iRNA_m5C:7.39186489795429e-13 58064 chr14 24025429 24025429 1 + C A rs116282655 24025425 + 24025405 24025445 41 ATGGCCGCTGGTGCCGGGACCTGCCGGGCGCGCGGAGGGTC ATGGCCGCTGGTGCCGGGACCTGCAGGGCGCGCGGAGGGTC < 41bp 0.605576994286171 0.876195737163737 0.41178957 0.7251352 prediction 0.541237485755131 Functional Gain - THTPA ENSG00000157306 ncRNA_exonic Human processed_transcript chr14:24025425 chr14:24025429 . . 0 25 hm5C_associated_SNPs_104919 0 0 0 0 0 Cytosol 0.500231644337018 0.500231643920974 0.4502704 0 hm5C_site_58064 DeepMRMD:0.4502704;iRNA_m5C:0 58065 chrX 153247910 153247910 1 + C G BLCA 153247906 + 153247886 153247926 41 TGGCCCGTGGCCTGGTGCCTCTACCTAGACCGCGGCTGGCG TGGCCCGTGGCCTGGTGCCTCTACGTAGACCGCGGCTGGCG < 41bp 0.482939009179933 0.770616065714909 0.2825244 0.5008798 prediction 0.541232131429818 Functional Gain - TMEM187 ENSG00000177854 CDS Human protein_coding chrX:153247906 chrX:153247910 nonsynonymous SNV 0.486 0 25 hm5C_associated_SNPs_104920 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.00175959999999997 0 hm5C_site_58065 DeepMRMD:0.00175959999999997;iRNA_m5C:0 58066 chr6 106553510 106553510 1 + C G LUAD 106553509 + 106553489 106553529 41 GGGAGGTGCTTGTCCCGGCGCCCCACAGTGCCTTCTCCTTT GGGAGGTGCTTGTCCCGGCGCGCCACAGTGCCTTCTCCTTT < 41bp 0.46023663103643 0.770615277070473 0.2867307 0.3050038 prediction 0.541230554140945 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106553509 chr6:106553510 nonsynonymous SNV 0.906 2 22 hm5C_associated_SNPs_104921 0 0 0 0 0 cytosol 0.500231643958271 0.500231643921114 0 0 hm5C_site_58066 DeepMRMD:0;iRNA_m5C:0 58067 chr6 135518403 135518403 1 + T G SKCM 135518401 + 135518381 135518421 41 AGCTCCTTCATATTTGCTGACGTCAGCAGTTCAACTCCCAA AGCTCCTTCATATTTGCTGACGGCAGCAGTTCAACTCCCAA < 41bp 0.514946792317029 0.785554391958122 0.28450388 0.5170445 prediction 0.541215199282185 Functional Gain - MYB ENSG00000118513 CDS Human protein_coding chr6:135518401 chr6:135518403 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_104922 0 0 0 0 0 Nucleus 0.500231643926995 0.500231643921092 0.034089 0 hm5C_site_58067 DeepMRMD:0.034089;iRNA_m5C:0 58068 chr12 51065097 51065097 1 + T G LUAD 51065095 + 51065075 51065115 41 AATTCAGGGATCGTCCACTTCTTCATCCGCATCTTCTACGC AATTCAGGGATCGTCCACTTCTGCATCCGCATCTTCTACGC < 41bp 0.576486980757367 0.847090292557604 0.17961085 0.5422057 prediction 0.541206623600474 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51065095 chr12:51065097 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_104923 0 0 1 0 1 Nucleus 0.500231643921541 0.500231644300658 0.0844114 7.58233253961293e-10 hm5C_site_58068 DeepMRMD:0.0844114;iRNA_m5C:7.58233253961293e-10 58069 chr7 143807116 143807116 1 + C A UCEC 143807112 + 143807092 143807132 41 GTGCACGATCCTGGTTCTCACGTCCTGGTCATGTGGGTTTG GTGCACGATCCTGGTTCTCACGTCATGGTCATGTGGGTTTG < 41bp 0.390233335860423 0.770598334603834 0.10821065 0.12874973 prediction 0.541196669207667 Functional Gain - OR2A2 ENSG00000221989 CDS Human protein_coding chr7:143807112 chr7:143807116 synonymous SNV . 0 25 hm5C_associated_SNPs_104924 0 0 0 0 0 unknown 0.50023495168771 0.500231968218879 0 0 hm5C_site_58069 DeepMRMD:0;iRNA_m5C:0 58070 chr12 113590684 113590684 1 + T A rs116586136 113590680 + 113590660 113590700 41 GGATCGTTCATCCGCTTTGACAAGTTTTTGCAGGTAGGTGG GGATCGTTCATCCGCTTTGACAAGATTTTGCAGGTAGGTGG < 41bp 0.565960134272962 0.836548406282603 0.19192895 0.15566966 prediction 0.541176544019282 Functional Gain - CFAP73 ENSG00000186710 CDS Human protein_coding chr12:113590680 chr12:113590684 nonsynonymous SNV 0.498 3 25 hm5C_associated_SNPs_104925 0 0 0 0 2 nucleoplasm 0.500231710007929 0.500231666466458 0 0 hm5C_site_58070 DeepMRMD:0;iRNA_m5C:0 58071 chr11 17741842 17741842 1 + C A LUSC 17741838 + 17741818 17741858 41 GCTGCGCGACCAGGACGCCGCGCCCCCTGGCGCCGCAGCCG GCTGCGCGACCAGGACGCCGCGCCACCTGGCGCCGCAGCCG < 41bp 0.63691742915821 0.907499108454115 0.18158224 0.3981284 prediction 0.541163358591809 Functional Gain - MYOD1 ENSG00000129152 CDS Human protein_coding chr11:17741838 chr11:17741842 synonymous SNV . 0 25 hm5C_associated_SNPs_104926 0 0 0 0 0 unknown 0.500230029209183 0.500231641616837 0 3.22481530856678e-06 hm5C_site_58071 DeepMRMD:0;iRNA_m5C:3.22481530856678e-06 58072 chr17 3324762 3324762 1 + C A UCEC 3324758 + 3324738 3324778 41 ATGCTGAACCCACTTATCTACAGCCTCAGAAATACTGATGT ATGCTGAACCCACTTATCTACAGCATCAGAAATACTGATGT < 41bp 0.381757760410848 0.770581014706983 0.12582451 0.08374742 prediction 0.541162029413967 Functional Gain - OR3A3 ENSG00000159961 CDS Human protein_coding chr17:3324758 chr17:3324762 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_104927 0 0 0 0 0 exosome 0.500231643921089 0.50023164391941 0 0 hm5C_site_58072 DeepMRMD:0;iRNA_m5C:0 58073 chr6 125584048 125584048 1 + C G PRAD 125584047 + 125584027 125584067 41 CCTCAGCTCCACGGCCCATGCCAGTGCCCAGAGCTTGGCAG CCTCAGCTCCACGGCCCATGCGAGTGCCCAGAGCTTGGCAG < 41bp 0.557451304145595 0.828014902211699 0.2984854 0.45824432 prediction 0.541127196132208 Functional Gain - TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125584047 chr6:125584048 synonymous SNV . 0 22 hm5C_associated_SNPs_104928 0 0 1 0 1 Ribosome 0.500231643798812 0.500231643921089 0 2.44554154704701e-10 hm5C_site_58073 DeepMRMD:0;iRNA_m5C:2.44554154704701e-10 58074 chr12 132635888 132635888 1 + C G rs150774836 132635887 + 132635867 132635907 41 TACCGCGCCCGCTTCTTCCACCTGGCTGACCTCTTCCTGTC TACCGCGCCCGCTTCTTCCACGTGGCTGACCTCTTCCTGTC < 41bp 0.459558193248738 0.770555415076919 0.71087795 0.8934889 prediction 0.541110830153837 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132635887 chr12:132635888 nonsynonymous SNV 0.340 4 22 hm5C_associated_SNPs_104929 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643921092 0.3652219 0 hm5C_site_58074 DeepMRMD:0.3652219;iRNA_m5C:0 58075 chr12 113314597 113314597 1 + C G BRCA 113314593 + 113314573 113314613 41 AAGCATCTGCAGCTGCCCCCCAGCCTGCTGCAGCCCGCCAG AAGCATCTGCAGCTGCCCCCCAGCGTGCTGCAGCCCGCCAG < 41bp 0.471548679193498 0.770552852181744 0.15580949 0.32062566 prediction 0.541105704363488 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113314593 chr12:113314597 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_104930 0 0 0 0 1 exosome 0.500231643921092 0.500231643922226 0 2.26729746088949e-12 hm5C_site_58075 DeepMRMD:0;iRNA_m5C:2.26729746088949e-12 58076 chr3 101283723 101283723 1 + T G GBM 101283721 + 101283701 101283741 41 CTTCATAGGAAGAGAAATAACTTAACAATTTTGCAGAGATA CTTCATAGGAAGAGAAATAACTGAACAATTTTGCAGAGATA < 41bp 0.556497364146272 0.827043397677779 0.048459977 0.3247258 prediction 0.541092067063014 Functional Gain - TRMT10C ENSG00000174173 CDS Human protein_coding chr3:101283721 chr3:101283723 stopgain 0.149 0 23 hm5C_associated_SNPs_104931 0 0 1 0 0 Ribosome 0.500231639946374 0.500231456151304 0 0 hm5C_site_58076 DeepMRMD:0;iRNA_m5C:0 58077 chr16 2548372 2548372 1 + C A UCEC 2548368 + 2548348 2548388 41 CAGCCCCTTCTGCTGTTCTCCTCCCTGCAGCACGGGTACAG CAGCCCCTTCTGCTGTTCTCCTCCATGCAGCACGGGTACAG < 41bp 0.339469417849571 0.770543548999261 0.29606357 0.9370377 prediction 0.541087097998522 Functional Gain - TBC1D24 ENSG00000162065 CDS Human protein_coding chr16:2548368 chr16:2548372 nonsynonymous SNV 0.827 0 25 hm5C_associated_SNPs_104932 0 0 1 1 1 Cytosol 0.500231643384556 0.50023164361377 0.8740754 4.58428850436121e-10 hm5C_site_58077 DeepMRMD:0.8740754;iRNA_m5C:4.58428850436121e-10 58078 chr3 184056750 184056750 1 + T G rs557011163 184056748 + 184056728 184056768 41 CTGGAGGCTACTGGCGCCACCCTGGGGGCCCTGTCAGCCAG CTGGAGGCTACTGGCGCCACCCGGGGGGCCCTGTCAGCCAG < 41bp 0.60514556668686 0.875684288103525 0.36335424 0.9298853 prediction 0.541077442833329 Functional Gain - FAM131A ENSG00000175182 UTR5 Human protein_coding chr3:184056748 chr3:184056750 . . 0 23 hm5C_associated_SNPs_104933 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921096 0.8597706 6.88338275267597e-15 hm5C_site_58078 DeepMRMD:0.8597706;iRNA_m5C:6.88338275267597e-15 58079 chr19 30934613 30934613 1 + C G LUAD 30934612 + 30934592 30934632 41 CCAGCTCAGCCATGCCTTCCCCGAGCTCCATCCCCGGCCCA CCAGCTCAGCCATGCCTTCCCGGAGCTCCATCCCCGGCCCA < 41bp 0.566671246616832 0.837197417199207 0.46919498 0.9098927 prediction 0.541052341164751 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934612 chr19:30934613 synonymous SNV . 0 22 hm5C_associated_SNPs_104934 0 0 0 0 0 exosome 0.500231643921095 0.500231643863175 0.8197854 0 hm5C_site_58079 DeepMRMD:0.8197854;iRNA_m5C:0 58080 chr15 23811185 23811185 1 + C A STAD 23811181 + 23811161 23811201 41 TCAGGAGGAGGAGCCTGGCCCAGTCCGTTGCCAAGCCGAAG TCAGGAGGAGGAGCCTGGCCCAGTACGTTGCCAAGCCGAAG < 41bp 0.39319340018902 0.770513678942978 0.38022444 0.4467944 prediction 0.541027357885956 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811181 chr15:23811185 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104935 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_58080 DeepMRMD:0;iRNA_m5C:0 58081 chr9 108210331 108210331 1 + C A rs556500246 108210327 + 108210307 108210347 41 GGGCCGCCCTTTCACCCTGGCAACCGCGGCGTGACTACGGC GGGCCGCCCTTTCACCCTGGCAACAGCGGCGTGACTACGGC < 41bp 0.408040859089217 0.770491283793251 0.1372272 0.11886999 prediction 0.540982567586502 Functional Gain - FSD1L ENSG00000106701 UTR5 Human protein_coding chr9:108210327 chr9:108210331 . . 0 25 hm5C_associated_SNPs_104936 0 0 0 0 0 membrane 0.500231643921084 0.500231643921092 0 1.77635683940025e-14 hm5C_site_58081 DeepMRMD:0;iRNA_m5C:1.77635683940025e-14 58082 chr15 71211475 71211475 1 + T C BRCA 71211473 + 71211453 71211493 41 TTTTAAGTCATGTTGATAATCTTAATGGGCTGGATTCACTA TTTTAAGTCATGTTGATAATCTCAATGGGCTGGATTCACTA < 41bp 0.476335180994206 0.770484048545854 0.19730294 0.7168179 prediction 0.540968097091709 Functional Gain - LRRC49 ENSG00000137821 CDS Human protein_coding chr15:71211473 chr15:71211475 synonymous SNV . 0 23 hm5C_associated_SNPs_104937 0 0 1 0 2 nucleus 0.500231643921136 0.500231643920632 0.4336358 0 hm5C_site_58082 DeepMRMD:0.4336358;iRNA_m5C:0 58083 chr7 76139940 76139940 1 + C A rs77544843 76139936 + 76139916 76139956 41 GCAGCCCGAAGCAGCCAGACCAGCCCCTGAGCCTCCCGGGT GCAGCCCGAAGCAGCCAGACCAGCACCTGAGCCTCCCGGGT < 41bp 0.523902628697284 0.794382778952108 0.29609483 0.48161986 prediction 0.540960300509648 Functional Gain - UPK3B ENSG00000243566 UTR5 Human protein_coding chr7:76139936 chr7:76139940 . . 0 25 hm5C_associated_SNPs_104938 0 0 0 0 0 exosome 0.50023164392114 0.500231643921092 0 0 hm5C_site_58083 DeepMRMD:0;iRNA_m5C:0 58084 chr11 94040439 94040439 1 + T A LIHC 94040435 + 94040415 94040455 41 ATGTCTTACACATGCAAATCCAACTGGCGTGGTGGCTGGGA ATGTCTTACACATGCAAATCCAACAGGCGTGGTGGCTGGGA < 41bp 0.446018652369188 0.770476367397769 0.3768027 0.27797768 prediction 0.540952734795537 Functional Gain - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94040435 chr11:94040439 nonsynonymous SNV 0.094 4 25 hm5C_associated_SNPs_104939 0 0 0 0 0 unknown 0.500231643913847 0.500231643893637 0 0 hm5C_site_58084 DeepMRMD:0;iRNA_m5C:0 58085 chr20 34022444 34022444 1 + C A GBM 34022440 + 34022420 34022460 41 GCTTCAGCTGGGCAGCCCGCCCGCCTCCGGGGGCCGCTGGC GCTTCAGCTGGGCAGCCCGCCCGCATCCGGGGGCCGCTGGC < 41bp 0.396457943729102 0.770461855989213 0.045308292 0.033563018 prediction 0.540923711978427 Functional Gain - GDF5;GDF5OS ENSG00000125965;ENSG00000204183 CDS Human other chr20:34022440 chr20:34022444 nonsynonymous SNV 0.409 0 25 hm5C_associated_SNPs_104940 0 0 0 0 0 unknown 0.500231643919174 0.50022900595205 0 0 hm5C_site_58085 DeepMRMD:0;iRNA_m5C:0 58086 chr17 80012452 80012452 1 + C G CESC 80012451 + 80012431 80012471 41 GCCCCCAGCCCTGGACACGGCCTGGGTGGAGGCCACGCGGA GCCCCCAGCCCTGGACACGGCGTGGGTGGAGGCCACGCGGA < 41bp 0.561299066662145 0.831759576898222 0.35094768 0.70356524 prediction 0.540921020472154 Functional Gain - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80012451 chr17:80012452 synonymous SNV . 0 22 hm5C_associated_SNPs_104941 0 0 1 0 2 Cytosol 0.500231643992453 0.500231643948081 0.40713048 0 hm5C_site_58086 DeepMRMD:0.40713048;iRNA_m5C:0 58087 chr20 5296549 5296549 1 + C A rs910972 5296545 + 5296525 5296565 41 ACCCAAGACAAGAGGGCGCGCGCCCGGGCTGGGACAGGTCC ACCCAAGACAAGAGGGCGCGCGCCAGGGCTGGGACAGGTCC < 41bp 0.407780711585835 0.770453292264232 0.41927516 0.68556213 prediction 0.540906584528463 Functional Gain - PROKR2 ENSG00000101292 intronic Human protein_coding chr20:5296545 chr20:5296549 . . 0 25 hm5C_associated_SNPs_104942 0 0 0 0 0 exosome 0.500231643921092 0.500231643960948 0.37112426 7.97102384098025e-11 hm5C_site_58087 DeepMRMD:0.37112426;iRNA_m5C:7.97102384098025e-11 58088 chr11 780358 780358 1 + C G rs540953394 780357 + 780337 780377 41 GCTCACCGCCTGCCCCTTGACCGTGGAGTTCGGACGCGTCT GCTCACCGCCTGCCCCTTGACGGTGGAGTTCGGACGCGTCT < 41bp 0.529049648459934 0.799500124809881 0.34289545 0.7414452 prediction 0.540900952699894 Functional Gain - LOC171391 ENSG00000177236 ncRNA_exonic Human other chr11:780357 chr11:780358 . . 0 22 hm5C_associated_SNPs_104943 0 0 0 0 0 unknown 0.500231643921093 0.500231643921124 0.4828904 6.28386231937839e-14 hm5C_site_58088 DeepMRMD:0.4828904;iRNA_m5C:6.28386231937839e-14 58089 chr16 56623867 56623867 1 + C G THCA 56623866 + 56623846 56623886 41 GAGTGAGTGCGGGGACCCTTCCCCTCTGCCGCCGCCCCCTC GAGTGAGTGCGGGGACCCTTCGCCTCTGCCGCCGCCCCCTC < 41bp 0.56965577412769 0.840099187706777 0.025960237 0.024686247 prediction 0.540886827158173 Functional Gain - MT3 ENSG00000087250 CDS Human protein_coding chr16:56623866 chr16:56623867 synonymous SNV . 0 22 hm5C_associated_SNPs_104944 0 0 0 0 2 exosome 0.500231643921093 0.500231641044445 0 0 hm5C_site_58089 DeepMRMD:0;iRNA_m5C:0 58090 chr15 102303525 102303525 1 + C A rs546310986 102303521 + 102303501 102303541 41 CTTGCGTGGGAACGAGAAGACACTCATGGAGGAGTCGGCAG CTTGCGTGGGAACGAGAAGACACTAATGGAGGAGTCGGCAG < 41bp 0.410007077092756 0.770438582145622 0.22323209 0.8634323 prediction 0.540877164291245 Functional Gain - LOC100128108;OR4F6 ENSG00000259660 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102303521 chr15:102303525 . . 0 25 hm5C_associated_SNPs_104945 0 0 0 0 0 unknown 0.500231634233338 0.500231649015255 0.7268646 2.95638344915972e-08 hm5C_site_58090 DeepMRMD:0.7268646;iRNA_m5C:2.95638344915972e-08 58091 chr21 47660785 47660785 1 + T A HNSC 47660781 + 47660761 47660801 41 GACAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCG GACAAACACTGCGCCAAGAGCTCCACAGCAGAAGCTCCTCG < 41bp 0.416102536724606 0.770436636907208 0.1803599 0.7860724 prediction 0.540873273814416 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660781 chr21:47660785 nonsynonymous SNV 0.119 0 25 hm5C_associated_SNPs_104946 0 0 1 4 1 Nucleus 0.500231643360903 0.500231643865517 0.5721448 1.00922781243185e-09 hm5C_site_58091 DeepMRMD:0.5721448;iRNA_m5C:1.00922781243185e-09 58092 chr19 57931180 57931180 1 + C G KIRC 57931179 + 57931159 57931199 41 CTGAGCATGACGGAACACACCCCAAGCGTACAGCCAAGCTT CTGAGCATGACGGAACACACCGCAAGCGTACAGCCAAGCTT < 41bp 0.559952954792171 0.830387525748286 0.018075794 0.08581671 prediction 0.540869141912231 Functional Gain - ZNF17 ENSG00000186272;ENSG00000269533 CDS Human other chr19:57931179 chr19:57931180 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_104947 0 0 0 0 0 nucleus 0.500231637966126 0.500230777432438 0 0 hm5C_site_58092 DeepMRMD:0;iRNA_m5C:0 58093 chr5 179193074 179193074 1 + C G KIRC 179193073 + 179193053 179193093 41 TTCCACACCTCTGGTCAGCCCCGGGCGGACAATCCCAGTCC TTCCACACCTCTGGTCAGCCCGGGGCGGACAATCCCAGTCC < 41bp 0.455221817784112 0.770422850815974 0.73558503 0.9134862 prediction 0.540845701631947 Functional Gain - MAML1 ENSG00000161021 CDS Human protein_coding chr5:179193073 chr5:179193074 nonsynonymous SNV 0.015 0 22 hm5C_associated_SNPs_104948 0 0 1 0 0 Ribosome 0.500231643908447 0.500231643921108 0.35580234 2.53201903888112e-11 hm5C_site_58093 DeepMRMD:0.35580234;iRNA_m5C:2.53201903888112e-11 58094 chr1 167095134 167095134 1 + C G rs141233283 167095130 + 167095110 167095150 41 ATCCTGGAGGCTTTGATGACCGTGCGTAAGAAGCGGGCCAT ATCCTGGAGGCTTTGATGACCGTGGGTAAGAAGCGGGCCAT < 41bp 0.48786316000753 0.77041751287574 0.3892839 0.6384445 prediction 0.54083502575148 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167095130 chr1:167095134 nonsynonymous SNV 0.558 4 25 hm5C_associated_SNPs_104949 0 0 0 0 0 Endoplasmic reticulum 0.50023135170793 0.500231643921089 0.276889 5.84426318672726e-07 hm5C_site_58094 DeepMRMD:0.276889;iRNA_m5C:5.84426318672726e-07 58095 chr5 94927278 94927278 1 + C A UCEC 94927274 + 94927254 94927294 41 ATGGGACCAGGAATTAAAGCCGGCCTACAAGTATCAAATGT ATGGGACCAGGAATTAAAGCCGGCATACAAGTATCAAATGT < 41bp 0.370013404134373 0.770405993936972 0.52800345 0.806224 prediction 0.540811987873945 Functional Gain - ARSK ENSG00000164291 CDS Human protein_coding chr5:94927274 chr5:94927278 nonsynonymous SNV 0.353 1 25 hm5C_associated_SNPs_104950 0 0 0 0 1 Ribosome 0.500231643921092 0.500230926818206 0.5564411 0 hm5C_site_58095 DeepMRMD:0.5564411;iRNA_m5C:0 58096 chr6 108882851 108882851 1 + C G UCEC 108882850 + 108882830 108882870 41 CGGCTGGGGGCTCCGGGCAGCCGAGGAAATGTTCGTCGCGG CGGCTGGGGGCTCCGGGCAGCGGAGGAAATGTTCGTCGCGG < 41bp 0.470933153188603 0.770395563031603 0.90896213 0.9223379 prediction 0.540791126063206 Functional Gain - FOXO3 ENSG00000118689 CDS Human protein_coding chr6:108882850 chr6:108882851 nonsynonymous SNV 0.953 2 22 hm5C_associated_SNPs_104951 0 0 0 0 0 Cytosol 0.500231643921119 0.500231643921092 0.02675154 0 hm5C_site_58096 DeepMRMD:0.02675154;iRNA_m5C:0 58097 chr5 140616088 140616088 1 + C A LUAD 140616084 + 140616064 140616104 41 CAATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCACG CAATGGCGAGCCTCCGCGCTCGGCAACCGCCACGCTGCACG < 41bp 0.618286249587803 0.888680329357803 0.58073443 0.8288188 prediction 0.540788159540001 Functional Gain - PCDHB18P ENSG00000146001 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:140616084 chr5:140616088 . . 0 25 hm5C_associated_SNPs_104952 0 0 0 0 0 unknown 0.500231638121765 0.50014719087648 0.49616874 0 hm5C_site_58097 DeepMRMD:0.49616874;iRNA_m5C:0 58098 chr14 24424292 24424292 1 + G T KIRC 24424296 - 24424276 24424316 41 CTGCTGCTTCCGGCTGCTGACGACCACATGGGCCCCGTCCT CTGCTGCTTCCGGCTGCTGACGACAACATGGGCCCCGTCCT < 41bp 0.631106144153653 0.90149713739604 0.039366037 0.30396682 prediction 0.540781986484773 Functional Gain - DHRS4 ENSG00000157326 CDS Human protein_coding chr14:24424296 chr14:24424292 synonymous SNV . 0 25 hm5C_associated_SNPs_104953 0 0 0 0 0 Ribosome 0.500231643921095 0.500231643984162 0 1.26133770095294e-10 hm5C_site_58098 DeepMRMD:0;iRNA_m5C:1.26133770095294e-10 58099 chr14 55529352 55529352 1 + C G UCEC 55529348 + 55529328 55529368 41 TGTTCCAGTTGGCAGATGCACTACCTGAACACTCCCCTGCC TGTTCCAGTTGGCAGATGCACTACGTGAACACTCCCCTGCC < 41bp 0.492834716602951 0.770388776683355 0.110839814 0.13953948 prediction 0.54077755336671 Functional Gain - MAPK1IP1L ENSG00000168175 CDS Human protein_coding chr14:55529348 chr14:55529352 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_104954 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921115 0 4.44089209850063e-14 hm5C_site_58099 DeepMRMD:0;iRNA_m5C:4.44089209850063e-14 58100 chr19 35505160 35505160 1 + C G KIRP 35505159 + 35505139 35505179 41 CCTCCAGCCAGACAGTGACCCCGGTGGCTGAACCCCCGAGC CCTCCAGCCAGACAGTGACCCGGGTGGCTGAACCCCCGAGC < 41bp 0.567478539546976 0.837863398554844 0.7484242 0.9320447 prediction 0.540769718015736 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35505159 chr19:35505160 nonsynonymous SNV 0.830 2 22 hm5C_associated_SNPs_104955 0 0 1 0 1 Endoplasmic reticulum 0.500230970840643 0.500231518121347 0.367241 1.09456140728881e-06 hm5C_site_58100 DeepMRMD:0.367241;iRNA_m5C:1.09456140728881e-06 58101 chr10 96612526 96612526 1 + T A PRAD 96612522 + 96612502 96612542 41 GTGTGGGAGAGGGCCTGGCCCGCATGGAGCTGTTTTTATTC GTGTGGGAGAGGGCCTGGCCCGCAAGGAGCTGTTTTTATTC < 41bp 0.460204586117219 0.770374099175096 0.026401222 0.056516945 prediction 0.540748198350192 Functional Gain - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96612522 chr10:96612526 nonsynonymous SNV 0.906 3 25 hm5C_associated_SNPs_104956 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58101 DeepMRMD:0;iRNA_m5C:0 58102 chr16 56660410 56660410 1 + T A rs138690474 56660406 + 56660386 56660426 41 TGCACGTGCGCCGGCTCCTGCAAGTGCAAAGAGTGCAAATG TGCACGTGCGCCGGCTCCTGCAAGAGCAAAGAGTGCAAATG < 41bp 0.548136796841303 0.818506467705786 0.79956675 0.8409518 prediction 0.540739341728967 Functional Gain - MT1E ENSG00000169715 CDS Human protein_coding chr16:56660406 chr16:56660410 nonsynonymous SNV 0.990 3 25 hm5C_associated_SNPs_104957 0 0 0 0 1 Ribosome 0.500231643922523 0.500231643920808 0.0827701000000001 0 hm5C_site_58102 DeepMRMD:0.0827701000000001;iRNA_m5C:0 58103 chr4 187130359 187130359 1 + C G rs35524919 187130358 + 187130338 187130378 41 CCAGCCTGAGCGGTTCTTCCCCGAGAATGCACAAGGGCGCC CCAGCCTGAGCGGTTCTTCCCGGAGAATGCACAAGGGCGCC < 41bp 0.5733264118488 0.843695201539992 0.55677843 0.93789554 prediction 0.540737579382384 Functional Gain - CYP4V2 ENSG00000145476;ENSG00000164344 CDS Human other chr4:187130358 chr4:187130359 synonymous SNV . 0 22 hm5C_associated_SNPs_104958 2 0 1 0 1 Nucleus 0.500231643920051 0.500231643921092 0.76223422 2.08366657261649e-12 hm5C_site_58103 DeepMRMD:0.76223422;iRNA_m5C:2.08366657261649e-12 Corneal Dystrophy, Recessive Corneal Dystrophy, Recessive 58104 chr8 128747888 128747888 1 + C G rs4645945 128747884 + 128747864 128747904 41 ATCAAAGCGCGGCCCTTTCCCCAGCCTTAGCGAGGCGCCCT ATCAAAGCGCGGCCCTTTCCCCAGGCTTAGCGAGGCGCCCT < 41bp 0.492175098933908 0.770367583796305 0.4119019 0.9067019 prediction 0.54073516759261 Functional Gain - MYC ENSG00000136997 UTR5 Human protein_coding chr8:128747884 chr8:128747888 . . 0 25 hm5C_associated_SNPs_104959 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.8134038 0 hm5C_site_58104 DeepMRMD:0.8134038;iRNA_m5C:0 58105 chr6 126278157 126278157 1 + C G rs568451027 126278156 + 126278136 126278176 41 CAGGTGAACCGCAGCGCCGGCCTGGCCCCCGACTGTGAGGC CAGGTGAACCGCAGCGCCGGCGTGGCCCCCGACTGTGAGGC < 41bp 0.477605472827158 0.770365202789805 0.8281685 0.8891747 prediction 0.540730405579609 Functional Gain - HINT3 ENSG00000111911 CDS Human protein_coding chr6:126278156 chr6:126278157 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_104960 0 0 1 0 0 Ribosome 0.500231643920645 0.500231643921092 0.1220124 8.95061802452801e-13 hm5C_site_58105 DeepMRMD:0.1220124;iRNA_m5C:8.95061802452801e-13 58106 chr19 22235307 22235307 1 + C G rs415291 22235306 + 22235286 22235326 41 ACTTTGTCTCTCGCTCTAGCCCGAGCTGCAGGTCTCGTCTT ACTTTGTCTCTCGCTCTAGCCGGAGCTGCAGGTCTCGTCTT < 41bp 0.504479008378216 0.774839614447905 0.368904 0.929494 prediction 0.540721212139378 Functional Gain - ZNF257 ENSG00000197134 UTR5 Human protein_coding chr19:22235306 chr19:22235307 . . 0 22 hm5C_associated_SNPs_104961 0 0 0 0 0 chromatin 0.500231365189608 0.500231643874307 0.858988 5.5736939752471e-07 hm5C_site_58106 DeepMRMD:0.858988;iRNA_m5C:5.5736939752471e-07 58107 chr14 105996058 105996058 1 + C G rs587728885 105996057 + 105996037 105996077 41 AGCGCAACTCGGTGCCGCCGCCGCCGCCGCCGCTGCACGGC AGCGCAACTCGGTGCCGCCGCGGCCGCCGCCGCTGCACGGC < 41bp 0.476532562979731 0.770359405519122 0.75732136 0.903222 prediction 0.540718811038244 Functional Gain - TMEM121 ENSG00000184986 CDS Human protein_coding chr14:105996057 chr14:105996058 nonsynonymous SNV 0.233 0 22 hm5C_associated_SNPs_104962 0 0 0 0 0 exosome 0.500231643923616 0.500231644529002 0.29180128 1.21077214920717e-09 hm5C_site_58107 DeepMRMD:0.29180128;iRNA_m5C:1.21077214920717e-09 58108 chr8 182450 182450 1 + C G rs564299626 182446 + 182426 182466 41 TCCGCTTTTTGTGGCCAAACCCAGCCACGCAGTTCCCTTCC TCCGCTTTTTGTGGCCAAACCCAGGCACGCAGTTCCCTTCC < 41bp 0.489381664146454 0.770356969144525 0.68337685 0.9340097 prediction 0.54071393828905 Functional Gain - ZNF596 ENSG00000172748 UTR5 Human protein_coding chr8:182446 chr8:182450 . . 0 25 hm5C_associated_SNPs_104963 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0.5012657 0 hm5C_site_58108 DeepMRMD:0.5012657;iRNA_m5C:0 58109 chr3 53892809 53892809 1 + T G PRAD 53892806 + 53892786 53892826 41 GACATAAAGGAACAGTTGTGCTCTGCCCACAAACAGGCGTC GACATAAAGGAACAGTTGTGCTCGGCCCACAAACAGGCGTC < 41bp 0.387044200795776 0.770341562946377 0.1622794 0.5575765 prediction 0.540683125892753 Functional Gain - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53892806 chr3:53892809 nonsynonymous SNV 0.618 4 24 hm5C_associated_SNPs_104964 0 0 0 0 2 Nucleus 0.500231682079564 0.500231643919635 0.115153 0 hm5C_site_58109 DeepMRMD:0.115153;iRNA_m5C:0 58110 chr21 46117332 46117332 1 + C A LUSC 46117328 + 46117308 46117348 41 AGTGACCTGTGAGCCCAGCCCCTGCCAATCAGGCTGCACCA AGTGACCTGTGAGCCCAGCCCCTGACAATCAGGCTGCACCA < 41bp 0.40651146870149 0.770328923131397 0.10769442 0.09992382 prediction 0.540657846262795 Functional Gain - KRTAP10-12 ENSG00000189169 CDS Human protein_coding chr21:46117328 chr21:46117332 stopgain 0.988 0 25 hm5C_associated_SNPs_104965 0 0 0 0 0 unknown 0.500231643920713 0.500231643899261 0 0 hm5C_site_58110 DeepMRMD:0;iRNA_m5C:0 58111 chr3 97983924 97983924 1 + T G UCEC 97983922 + 97983902 97983942 41 GGCTCATCTCTTATCTGTATCTTTATACTATGGCCCCCTCA GGCTCATCTCTTATCTGTATCTGTATACTATGGCCCCCTCA < 41bp 0.458295550270551 0.770323824005433 0.22582778 0.29027504 prediction 0.540647648010867 Functional Gain - OR5H6 ENSG00000230301 CDS Human protein_coding chr3:97983922 chr3:97983924 nonsynonymous SNV 0.304 1 23 hm5C_associated_SNPs_104966 0 0 0 0 0 unknown 0.500231643921092 0.500231643920727 0 0 hm5C_site_58111 DeepMRMD:0;iRNA_m5C:0 58112 chr1 233515102 233515102 1 + T A rs963981 233515098 + 233515078 233515118 41 CCTCCCACAAGCCTGCCATCCACCTGTGGGGAGGCCAGCAG CCTCCCACAAGCCTGCCATCCACCAGTGGGGAGGCCAGCAG < 41bp 0.590730864005209 0.861037311712145 0.14503163 0.19019079 prediction 0.540612895413874 Functional Gain - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233515098 chr1:233515102 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104967 0 0 0 0 0 unknown 0.500231643921091 0.50023164391788 0 0 hm5C_site_58112 DeepMRMD:0;iRNA_m5C:0 58113 chr7 97362024 97362024 1 + T A LUSC 97362020 + 97362000 97362040 41 GATGATCTGAATTACTGGTCCGACTGGTACGACAGCGACCA GATGATCTGAATTACTGGTCCGACAGGTACGACAGCGACCA < 41bp 0.576672379694704 0.846969006685065 0.037654907 0.2686571 prediction 0.540593253980722 Functional Gain - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97362020 chr7:97362024 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_104968 0 0 0 0 1 exosome 0.500231643622131 0.500231643397886 0 0 hm5C_site_58113 DeepMRMD:0;iRNA_m5C:0 58114 chr3 19479763 19479763 1 + C A STAD 19479759 + 19479739 19479779 41 TATATTGCCGCTCTGTACTTCACGCTGAGCAGCCTCACCAG TATATTGCCGCTCTGTACTTCACGATGAGCAGCCTCACCAG < 41bp 0.596986826212899 0.867273938306328 0.41515824 0.73176944 prediction 0.540574224186858 Functional Gain - KCNH8 ENSG00000183960 CDS Human protein_coding chr3:19479759 chr3:19479763 nonsynonymous SNV 0.984 3 25 hm5C_associated_SNPs_104969 0 0 0 0 1 exosome 0.500231644555583 0.500231607565315 0.46353888 0 hm5C_site_58114 DeepMRMD:0.46353888;iRNA_m5C:0 58115 chr17 7188459 7188459 1 + C G rs8192702 7188455 + 7188435 7188475 41 GGACGCTCCATCTCCTGGGCCTGGCGGGCATGTGTGGCTGT GGACGCTCCATCTCCTGGGCCTGGGGGGCATGTGTGGCTGT < 41bp 0.485391141221617 0.77024522438629 0.5064181 0.866521 prediction 0.540490448772581 Functional Gain - SLC2A4 ENSG00000181856 CDS Human protein_coding chr17:7188455 chr17:7188459 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_104970 0 0 1 0 2 Nucleus 0.500231644032629 0.500231643921109 0.7202058 0 hm5C_site_58115 DeepMRMD:0.7202058;iRNA_m5C:0 58116 chr1 28861871 28861871 1 + C G SKCM 28861867 + 28861847 28861887 41 CGTGTGCCTGAGTTATTTGCCAACCGTGGTGGCCGGCAAGG CGTGTGCCTGAGTTATTTGCCAACGGTGGTGGCCGGCAAGG < 41bp 0.520441836962075 0.79067559970055 0.4427111 0.8448862 prediction 0.54046752547695 Functional Gain - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861867 chr1:28861871 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_104971 0 0 1 0 1 Ribosome 0.500231643804742 0.500231683679865 0.6897724 7.97502461846733e-08 hm5C_site_58116 DeepMRMD:0.6897724;iRNA_m5C:7.97502461846733e-08 58117 chr10 124672393 124672393 1 + T A LUSC 124672389 + 124672369 124672409 41 ATGGAGTCTTGTCCATCTCTCCAGTGCTGTGAAGGTTGTAG ATGGAGTCTTGTCCATCTCTCCAGAGCTGTGAAGGTTGTAG < 41bp 0.532933554322024 0.803164337448623 0.15532526 0.70679885 prediction 0.540461566253198 Functional Gain - FAM24A ENSG00000203795 CDS Human protein_coding chr10:124672389 chr10:124672393 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_104972 0 0 0 0 0 unknown 0.500231643911836 0.500231643921092 0.4135977 1.851141462339e-11 hm5C_site_58117 DeepMRMD:0.4135977;iRNA_m5C:1.851141462339e-11 58118 chr19 53761997 53761997 1 + C G CESC 53761996 + 53761976 53762016 41 TAGGGGATACAAGCCAAGATCCACAGATTTGATTCTCAGGC TAGGGGATACAAGCCAAGATCGACAGATTTGATTCTCAGGC < 41bp 0.545033889205738 0.815238953798791 0.11575496 0.35717273 prediction 0.540410129186105 Functional Gain - VN1R2 ENSG00000196131 CDS Human protein_coding chr19:53761996 chr19:53761997 synonymous SNV . 0 22 hm5C_associated_SNPs_104973 0 0 0 0 0 unknown 0.500248218908229 0.5002316439946 0 0 hm5C_site_58118 DeepMRMD:0;iRNA_m5C:0 58119 chr11 123480981 123480981 1 + T C rs10893053 123480979 + 123480959 123480999 41 TCACCCACGACGTGCCCTACCATGACTACTTCTACACAATC TCACCCACGACGTGCCCTACCACGACTACTTCTACACAATC < 41bp 0.5262290757527 0.796431718189187 0.0115175545 0.01343134 prediction 0.540405284872973 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123480979 chr11:123480981 synonymous SNV . 0 23 hm5C_associated_SNPs_104974 0 0 0 0 2 Cytosol 0.500232168690058 0.500235761501063 0 7.18562200940909e-06 hm5C_site_58119 DeepMRMD:0;iRNA_m5C:7.18562200940909e-06 58120 chr4 120192569 120192569 1 + T C LIHC 120192567 + 120192547 120192587 41 AAGGAAAAGGATCATATAAACATGACCGAGTTGTACCTCAG AAGGAAAAGGATCATATAAACACGACCGAGTTGTACCTCAG < 41bp 0.502186356675895 0.772369671970463 0.04512286 0.10366121 prediction 0.540366630589137 Functional Gain - USP53 ENSG00000145390 CDS Human protein_coding chr4:120192567 chr4:120192569 synonymous SNV . 0 23 hm5C_associated_SNPs_104975 0 0 1 0 0 Nucleus 0.500231642714165 0.500231632633372 0 0 hm5C_site_58120 DeepMRMD:0;iRNA_m5C:0 58121 chr9 98638313 98638313 1 + C G rs78293324 98638312 + 98638292 98638332 41 AGCCGGGCTCGGCCCCTCCCCCTGGCCGGATGGATCCGTCG AGCCGGGCTCGGCCCCTCCCCGTGGCCGGATGGATCCGTCG < 41bp 0.540959855872608 0.811139386868529 0.15570101 0.42189506 prediction 0.540359061991842 Functional Gain - ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98638312 chr9:98638313 nonsynonymous SNV 0.016 2 22 hm5C_associated_SNPs_104976 0 0 0 0 1 Nucleus 0.500231642733746 0.500169842252844 0 0 hm5C_site_58121 DeepMRMD:0;iRNA_m5C:0 58122 chr8 143626018 143626018 1 + C G rs147430126 143626017 + 143625997 143626037 41 GGCCGAAGGTGCCTCAGACTCCGCCCTCCTCGGGCCGAGGC GGCCGAAGGTGCCTCAGACTCGGCCCTCCTCGGGCCGAGGC < 41bp 0.526086747438543 0.796256551678641 0.54217225 0.9048936 prediction 0.540339608480195 Functional Gain - ADGRB1 ENSG00000181790 UTR3 Human protein_coding chr8:143626017 chr8:143626018 . . 0 22 hm5C_associated_SNPs_104977 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.7254427 0 hm5C_site_58122 DeepMRMD:0.7254427;iRNA_m5C:0 58123 chr21 45717689 45717689 1 + C G rs72650681 45717685 + 45717665 45717705 41 CCTTCCTCAGTCCTGGAAGCCGGCCGGCTGGGATCAAGAAG CCTTCCTCAGTCCTGGAAGCCGGCGGGCTGGGATCAAGAAG < 41bp 0.488623135606726 0.770166062652256 0.2747862 0.46779877 prediction 0.540332125304511 Functional Gain - AIRE ENSG00000160224 UTR3 Human protein_coding chr21:45717685 chr21:45717689 . . 0 25 hm5C_associated_SNPs_104978 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58123 DeepMRMD:0;iRNA_m5C:0 58124 chr9 131873638 131873638 1 + T G rs3124501 131873635 + 131873615 131873655 41 GCACTGACATGGCCGTCGCCCGGTTCCGCGCGTCCGCCGCG GCACTGACATGGCCGTCGCCCGGGTCCGCGCGTCCGCCGCG < 41bp 0.621206530346412 0.891354815595921 0.7961196 0.91002303 prediction 0.540296570499019 Functional Gain - PTPA ENSG00000119383 UTR5 Human protein_coding chr9:131873635 chr9:131873638 . . 0 24 hm5C_associated_SNPs_104979 0 0 1 0 0 Nucleus 0.500231643918674 0.500218092235241 0.22780686 0 hm5C_site_58124 DeepMRMD:0.22780686;iRNA_m5C:0 58125 chrX 107097870 107097870 1 + T A OV 107097866 + 107097846 107097886 41 TGGAGATGAACCTCACCAACCTGGTTAAGCGCAACAGCGAA TGGAGATGAACCTCACCAACCTGGATAAGCGCAACAGCGAA < 41bp 0.444573639033817 0.77014744927252 0.15460747 0.12346643 prediction 0.54029489854504 Functional Gain - MID2 ENSG00000080561 CDS Human protein_coding chrX:107097866 chrX:107097870 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_104980 0 0 0 0 2 nucleus 0.500228216517758 0.500231106202929 0 5.77937034229592e-06 hm5C_site_58125 DeepMRMD:0;iRNA_m5C:5.77937034229592e-06 58126 chr1 36788023 36788023 1 + C A rs200217271 36788019 + 36787999 36788039 41 AGGATCCGTTCGCGCTCCTCCAGCCGCTGCGCCCGCTCCAG AGGATCCGTTCGCGCTCCTCCAGCAGCTGCGCCCGCTCCAG < 41bp 0.63480053205959 0.904935935869202 0.4359545 0.42082474 prediction 0.540270807619224 Functional Gain - EVA1B ENSG00000142694 CDS Human protein_coding chr1:36788019 chr1:36788023 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_104981 0 0 1 0 1 exosome 0.5002316439211 0.500231644161577 0 4.80954165382741e-10 hm5C_site_58126 DeepMRMD:0;iRNA_m5C:4.80954165382741e-10 58127 chr16 90109969 90109969 1 + C G rs116336371 90109968 + 90109948 90109988 41 GTCGCTCCCTTCCCTGGGTGCCGCACGTCCAGCCTGTGTCC GTCGCTCCCTTCCCTGGGTGCGGCACGTCCAGCCTGTGTCC < 41bp 0.468798025197154 0.770134197294512 0.21879554 0.56479394 prediction 0.540268394589024 Functional Gain - URAHP ENSG00000222019 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:90109968 chr16:90109969 . . 0 22 hm5C_associated_SNPs_104982 0 0 1 0 0 unknown 0.500231643924956 0.500231644027252 0.12958788 2.04591898977924e-10 hm5C_site_58127 DeepMRMD:0.12958788;iRNA_m5C:2.04591898977924e-10 58128 chr11 57509108 57509108 1 + T G COAD 57509105 + 57509085 57509125 41 GAAGCGTAAGGCTGAGGCCGCGGTGGTCGCCGTAGCCGAGA GAAGCGTAAGGCTGAGGCCGCGGGGGTCGCCGTAGCCGAGA < 41bp 0.629258144565767 0.89938678650529 0.79983413 0.9094503 prediction 0.540257283879046 Functional Gain - SELENOH ENSG00000211450 CDS Human protein_coding chr11:57509105 chr11:57509108 unknown 0.001 0 24 hm5C_associated_SNPs_104983 0 0 1 0 1 unknown 0.500231643928554 0.500231644114477 0.21923234 3.71846997637704e-10 hm5C_site_58128 DeepMRMD:0.21923234;iRNA_m5C:3.71846997637704e-10 58129 chr11 88911405 88911405 1 + T C GBM 88911403 + 88911383 88911423 41 ACCTGCCAGTGCTCTGGCAACTTCATGGGATTCAACTGTGG ACCTGCCAGTGCTCTGGCAACTCCATGGGATTCAACTGTGG < 41bp 0.490994042063081 0.770125020311543 0.22408897 0.96196425 prediction 0.540250040623086 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:88911403 chr11:88911405 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_104984 0 0 0 0 0 unknown 0.500231643493107 0.500219394819476 0.9239285 0 hm5C_site_58129 DeepMRMD:0.9239285;iRNA_m5C:0 58130 chr4 139966871 139966871 1 + C G rs149471540 139966870 + 139966850 139966890 41 TTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCT TTAGTAGAGACGGGGTTTCACGGTGTTAGCCAGGATGGTCT < 41bp 0.513480051511857 0.783593681328343 0.2522154 0.685868 prediction 0.540227259632971 Functional Gain - NOCT ENSG00000151014 UTR3 Human protein_coding chr4:139966870 chr4:139966871 . . 0 22 hm5C_associated_SNPs_104985 0 0 0 0 0 chromatin 0.500231643921898 0.500231643921093 0.371736 0 hm5C_site_58130 DeepMRMD:0.371736;iRNA_m5C:0 58131 chr8 101237454 101237454 1 + C A OV 101237450 + 101237430 101237470 41 GACCAAATTGGCGGGAGAAGCTGTCACCTATTCCTGCTGTG GACCAAATTGGCGGGAGAAGCTGTAACCTATTCCTGCTGTG < 41bp 0.35407945880507 0.770085239756462 0.3694213 0.60582405 prediction 0.540170479512925 Functional Gain - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101237450 chr8:101237454 stopgain 0.997 0 25 hm5C_associated_SNPs_104986 0 0 0 0 1 chromatin 0.500231667570452 0.500231643921094 0.2116481 0 hm5C_site_58131 DeepMRMD:0.2116481;iRNA_m5C:0 Highest math class taken (MTAG) 58132 chr11 46299687 46299687 1 + C G ESCA 46299686 + 46299666 46299706 41 GACGCCGTCTTGGAACCCTTCCCGGCCGACAGGCTGTTCCC GACGCCGTCTTGGAACCCTTCGCGGCCGACAGGCTGTTCCC < 41bp 0.559420822691839 0.829502396206338 0.73259205 0.8847545 prediction 0.540163147028998 Functional Gain - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46299686 chr11:46299687 nonsynonymous SNV 0.996 0 22 hm5C_associated_SNPs_104987 0 0 0 0 1 Endoplasmic reticulum 0.500231659955781 0.500231647832684 0.3043249 0 hm5C_site_58132 DeepMRMD:0.3043249;iRNA_m5C:0 58133 chr22 37329973 37329973 1 + C A UCEC 37329969 + 37329949 37329989 41 GCCAGGGTGAGGGTCAGGACCTCCCGCACCGGCTACAACGG GCCAGGGTGAGGGTCAGGACCTCCAGCACCGGCTACAACGG < 41bp 0.660026971232677 0.930106577372688 0.08958283 0.9380237 prediction 0.540159212280023 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37329969 chr22:37329973 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_104988 0 0 0 0 2 Endoplasmic reticulum 0.50022329255683 0.500231516946393 0.8760474 1.64487791269874e-05 hm5C_site_58133 DeepMRMD:0.8760474;iRNA_m5C:1.64487791269874e-05 58134 chr1 181027024 181027024 1 + T G rs139098615 181027021 + 181027001 181027041 41 CCGGGGATGGTGGCGCATGCCTATAATCCCAGCTACTCGGG CCGGGGATGGTGGCGCATGCCTAGAATCCCAGCTACTCGGG < 41bp 0.610225812490575 0.880286644739683 0.32180938 0.25252086 prediction 0.540121664498215 Functional Gain - MR1 ENSG00000153029 UTR3 Human protein_coding chr1:181027021 chr1:181027024 . . 0 24 hm5C_associated_SNPs_104989 0 0 0 0 0 Endoplasmic reticulum 0.500231643922676 0.500231643924989 0 4.6243009421687e-12 hm5C_site_58134 DeepMRMD:0;iRNA_m5C:4.6243009421687e-12 58135 chr19 57641807 57641807 1 + T A HNSC 57641803 + 57641783 57641823 41 AATGAAGCTGACCTCAGAATCCAGTGATTCCCTGGTTCTAC AATGAAGCTGACCTCAGAATCCAGAGATTCCCTGGTTCTAC < 41bp 0.537910394877129 0.80796650473172 0.37667924 0.59590465 prediction 0.540112219709181 Functional Gain - USP29 ENSG00000131864 CDS Human protein_coding chr19:57641803 chr19:57641807 nonsynonymous SNV 0.081 0 25 hm5C_associated_SNPs_104990 0 0 0 0 0 unknown 0.500231643918548 0.500231643925038 0.1918093 1.29793953362878e-11 hm5C_site_58135 DeepMRMD:0.1918093;iRNA_m5C:1.29793953362878e-11 58136 chr1 53925332 53925332 1 + T G rs376953028 53925330 + 53925310 53925350 41 GAGGAGGAGCAGGAGGCGGCCCTGTGTGCGCAGGGGCCCAA GAGGAGGAGCAGGAGGCGGCCCGGTGTGCGCAGGGGCCCAA < 41bp 0.605727066348549 0.875782635747037 0.7817862 0.89929867 prediction 0.540111138796976 Functional Gain - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53925330 chr1:53925332 nonsynonymous SNV 0.006 1 23 hm5C_associated_SNPs_104991 0 0 0 0 0 unknown 0.500231560289168 0.500231639476306 0.23502494 1.58374275027739e-07 hm5C_site_58136 DeepMRMD:0.23502494;iRNA_m5C:1.58374275027739e-07 58137 chr5 167850751 167850751 1 + C G LUAD 167850747 + 167850727 167850767 41 GGCCACCGGCTTCCGGCCCTCAGGCTGCATCACCACCATCC GGCCACCGGCTTCCGGCCCTCAGGGTGCATCACCACCATCC < 41bp 0.540395597340171 0.810449966398015 0.91615367 0.9458045 prediction 0.540108738115689 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167850747 chr5:167850751 synonymous SNV . 0 25 hm5C_associated_SNPs_104992 0 0 1 0 0 Ribosome 0.500231643921083 0.500231643897274 0.05930166 0 hm5C_site_58137 DeepMRMD:0.05930166;iRNA_m5C:0 58138 chr4 184827971 184827971 1 + C G UCEC 184827967 + 184827947 184827987 41 AAGAAGACCCGGAGCACAACCTTGCGGCGAGCCTGGCCTAG AAGAAGACCCGGAGCACAACCTTGGGGCGAGCCTGGCCTAG < 41bp 0.504147516164481 0.77420169762444 0.2805674 0.85543776 prediction 0.540108362919918 Functional Gain - STOX2 ENSG00000173320 CDS Human protein_coding chr4:184827967 chr4:184827971 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_104993 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.71087552 0 hm5C_site_58138 DeepMRMD:0.71087552;iRNA_m5C:0 58139 chr11 82877716 82877716 1 + T A PRAD 82877712 + 82877692 82877732 41 GTAGAAAACTGGCAAAGTTCCAAGTCTGCCAAAAGATGGAA GTAGAAAACTGGCAAAGTTCCAAGACTGCCAAAAGATGGAA < 41bp 0.454668242571851 0.770037135045862 0.3823567 0.33989936 prediction 0.540074270091724 Functional Gain - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82877712 chr11:82877716 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_104994 0 0 1 0 1 Nucleus 0.500231643922676 0.50023164392112 0 0 hm5C_site_58139 DeepMRMD:0;iRNA_m5C:0 58140 chr1 1225727 1225727 1 + C A rs578015493 1225723 + 1225703 1225743 41 GCTACTACCTCCACCCTCTGCCGGCGGGGGCTGAGTACTGC GCTACTACCTCCACCCTCTGCCGGAGGGGGCTGAGTACTGC < 41bp 0.377177493965456 0.770035396625045 0.40282178 0.63551307 prediction 0.540070793250091 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1225723 chr1:1225727 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_104995 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.27102614 6.66133814775094e-16 hm5C_site_58140 DeepMRMD:0.27102614;iRNA_m5C:6.66133814775094e-16 58141 chr10 103361018 103361018 1 + C G GBM 103361014 + 103360994 103361034 41 TCCAGTGGCGGATTCGAAACCTCCCCTATCCTAAGGATGTC TCCAGTGGCGGATTCGAAACCTCCGCTATCCTAAGGATGTC < 41bp 0.504432169071493 0.774449926533901 0.0488351 0.06353724 prediction 0.540035514924817 Functional Gain - DPCD ENSG00000166171 CDS Human protein_coding chr10:103361014 chr10:103361018 nonsynonymous SNV 0.941 4 25 hm5C_associated_SNPs_104996 0 0 0 0 2 Ribosome 0.500231643921093 0.500231643478851 0 0 hm5C_site_58141 DeepMRMD:0;iRNA_m5C:0 58142 chr22 21649227 21649227 1 + C G rs546217664 21649226 + 21649206 21649246 41 CCCCGGCTGGGAGGTCAGACCCGGTGTTGGTCCTGCCACCC CCCCGGCTGGGAGGTCAGACCGGGTGTTGGTCCTGCCACCC < 41bp 0.551837285837123 0.821853495387631 0.9077766 0.9166407 prediction 0.540032419101016 Functional Gain - POM121L8P ENSG00000169662 upstream Human unprocessed_pseudogene chr22:21649226 chr22:21649227 . . 0 22 hm5C_associated_SNPs_104997 0 0 0 0 0 unknown 0.500231644102594 0.50023164398374 0.0177281999999999 0 hm5C_site_58142 DeepMRMD:0.0177281999999999;iRNA_m5C:0 58143 chr9 116241803 116241803 1 + C G SKCM 116241802 + 116241782 116241822 41 CTGTCCATTGATGCCCAGGACCGGGTTCTGCTGCTTCACAG CTGTCCATTGATGCCCAGGACGGGGTTCTGCTGCTTCACAG < 41bp 0.48805322315072 0.770010072746976 0.7420807 0.87579715 prediction 0.540020145493952 Functional Gain - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116241802 chr9:116241803 nonsynonymous SNV 0.951 2 22 hm5C_associated_SNPs_104998 0 0 1 0 2 Nucleus 0.500231643204615 0.500231643886947 0.2674329 1.36466438149796e-09 hm5C_site_58143 DeepMRMD:0.2674329;iRNA_m5C:1.36466438149796e-09 58144 chr10 71266923 71266923 1 + T A rs11068 71266919 + 71266899 71266939 41 AGGGAGCAGAGCCTGGGCCTCCCCTAAGAGGCTTTCCCCGA AGGGAGCAGAGCCTGGGCCTCCCCAAAGAGGCTTTCCCCGA < 41bp 0.567048637386329 0.837058446540249 0.2712357 0.5510651 prediction 0.54001961830784 Functional Gain - TSPAN15 ENSG00000099282 UTR3 Human protein_coding chr10:71266919 chr10:71266923 . . 0 25 hm5C_associated_SNPs_104999 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0.1021302 0 hm5C_site_58144 DeepMRMD:0.1021302;iRNA_m5C:0 58145 chr6 42848633 42848633 1 + C G BLCA 42848632 + 42848612 42848652 41 CCTTTGGTTCCAGAAAATCTCCTGAAAAAGAGGAAGGCTTA CCTTTGGTTCCAGAAAATCTCGTGAAAAAGAGGAAGGCTTA < 41bp 0.470307502455374 0.769998206689159 0.14393252 0.5875007 prediction 0.539996413378317 Functional Gain - RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42848632 chr6:42848633 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_105000 0 0 0 0 2 Ribosome 0.500231643921067 0.500231643909855 0.1750014 0 hm5C_site_58145 DeepMRMD:0.1750014;iRNA_m5C:0 58146 chr14 100795821 100795821 1 + C G rs148360182 100795817 + 100795797 100795837 41 GACGGGCAGGGCCAGAGGCGCTACCGGGGTCTCCTGCACTG GACGGGCAGGGCCAGAGGCGCTACGGGGGTCTCCTGCACTG < 41bp 0.533104656696745 0.803099533364617 0.20765671 0.82052433 prediction 0.539989753335743 Functional Gain - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100795817 chr14:100795821 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_105001 0 0 0 0 0 exosome 0.5002316439193 0.500231637411955 0.64104866 0 hm5C_site_58146 DeepMRMD:0.64104866;iRNA_m5C:0 58147 chr15 74893993 74893993 1 + C A rs571268114 74893989 + 74893969 74894009 41 AGGTTGTGGTGAGCCGAGATCACGCCATTGCACTCCAGCCT AGGTTGTGGTGAGCCGAGATCACGACATTGCACTCCAGCCT < 41bp 0.416872861642261 0.769991485387678 0.31858042 0.3453048 prediction 0.539982970775355 Functional Gain - ARID3B;CLK3 ENSG00000179361;ENSG00000179335 intergenic Human other chr15:74893989 chr15:74893993 . . 0 25 hm5C_associated_SNPs_105002 0 0 0 0 1 unknown 0.500247404974376 0.500232459501345 0 0 hm5C_site_58147 DeepMRMD:0;iRNA_m5C:0 58148 chr12 55886964 55886964 1 + T G COAD 55886962 + 55886942 55886982 41 TCTGCAAAAGAAGAGGTAAACATTAATAAAGGTGTGTCAGT TCTGCAAAAGAAGAGGTAAACAGTAATAAAGGTGTGTCAGT < 41bp 0.565601928754105 0.835593114912651 0.75511587 0.8854394 prediction 0.539982372317092 Functional Gain - OR6C68 ENSG00000205327 CDS Human protein_coding chr12:55886962 chr12:55886964 nonsynonymous SNV 0.028 1 23 hm5C_associated_SNPs_105003 0 0 0 0 0 unknown 0.500231643671499 0.500231636635117 0.26064706 0 hm5C_site_58148 DeepMRMD:0.26064706;iRNA_m5C:0 58149 chr12 65672558 65672558 1 + C A rs182726780 65672554 + 65672534 65672574 41 CTGCCTGGCCTTTCCATGAGCCCGCGGCGGACCCTCCCGCG CTGCCTGGCCTTTCCATGAGCCCGAGGCGGACCCTCCCGCG < 41bp 0.618646782273235 0.888627813518592 0.34559357 0.44498372 prediction 0.539962062490713 Functional Gain - MSRB3 ENSG00000174099 CDS Human protein_coding chr12:65672554 chr12:65672558 synonymous SNV . 0 25 hm5C_associated_SNPs_105004 1 0 1 0 1 Nucleus 0.500231643921094 0.500231643937233 0 3.22766258165075e-11 hm5C_site_58149 DeepMRMD:0;iRNA_m5C:3.22766258165075e-11 not specified not specified 58150 chr17 13928881 13928881 1 + C A rs199532345 13928877 + 13928857 13928897 41 GCAAACAAAGCTTTTAACGACAGCCGTTGTGCCCCAGGCTC GCAAACAAAGCTTTTAACGACAGCAGTTGTGCCCCAGGCTC < 41bp 0.42685313839692 0.769966244326616 0.33078223 0.3453139 prediction 0.539932488653232 Functional Gain - CDRT15P1 ENSG00000236088 ncRNA_intronic Human processed_transcript chr17:13928877 chr17:13928881 . . 0 25 hm5C_associated_SNPs_105005 0 0 0 0 0 unknown 0.500231643882739 0.500231643901858 0 3.82389675479544e-11 hm5C_site_58150 DeepMRMD:0;iRNA_m5C:3.82389675479544e-11 58151 chr2 219232780 219232780 1 + T G rs564104543 219232777 + 219232757 219232797 41 CGGGTGCGCTTTCCGGGCTGCGGTTTTGGGGGAATAAATGG CGGGTGCGCTTTCCGGGCTGCGGGTTTGGGGGAATAAATGG < 41bp 0.5955076019047 0.865471276910057 0.8651947 0.91199815 prediction 0.539927350010714 Functional Gain - CATIP ENSG00000158428 UTR3 Human protein_coding chr2:219232777 chr2:219232780 . . 0 24 hm5C_associated_SNPs_105006 0 0 0 0 0 exosome 0.500231643921092 0.500231643921091 0.0936068999999999 0 hm5C_site_58151 DeepMRMD:0.0936068999999999;iRNA_m5C:0 58152 chr5 175110911 175110911 1 + C A UCEC 175110907 + 175110887 175110927 41 TCACATTAGCTCCTGGAAGGCAGCCACCATCAGGGAGCACA TCACATTAGCTCCTGGAAGGCAGCAACCATCAGGGAGCACA < 41bp 0.376268922807778 0.769957784818331 0.060024798 0.07651922 prediction 0.539915569636662 Functional Gain - HRH2 ENSG00000113749 CDS Human protein_coding chr5:175110907 chr5:175110911 synonymous SNV . 0 25 hm5C_associated_SNPs_105007 0 0 0 0 0 nucleus 0.500231639856568 0.500230401019011 0 0 hm5C_site_58152 DeepMRMD:0;iRNA_m5C:0 58153 chrX 106171752 106171752 1 + T G UCEC 106171749 + 106171729 106171769 41 TCCTCCCTGGCCTGCATTATCTCTGTGGTGGGCATGAGATG TCCTCCCTGGCCTGCATTATCTCGGTGGTGGGCATGAGATG < 41bp 0.642058912749015 0.912007405786476 0.1286835 0.32738182 prediction 0.539896986074923 Functional Gain - CLDN2 ENSG00000165376 CDS Human protein_coding chrX:106171749 chrX:106171752 synonymous SNV . 0 24 hm5C_associated_SNPs_105008 0 0 0 0 0 Ribosome 0.500231643477653 0.500231643680578 0 4.05848465945269e-10 hm5C_site_58153 DeepMRMD:0;iRNA_m5C:4.05848465945269e-10 58154 chr22 18846067 18846067 1 + C A LUAD 18846063 + 18846043 18846083 41 ATGTCTGCGGCCACCCCAGACATGCGGTAGATGCCCACCTC ATGTCTGCGGCCACCCCAGACATGAGGTAGATGCCCACCTC < 41bp 0.407316633764925 0.769948464935038 0.47149745 0.9116408 prediction 0.539896929870076 Functional Gain - LOC102725072 ENSG00000215544 ncRNA_exonic Human unprocessed_pseudogene chr22:18846063 chr22:18846067 . . 0 25 hm5C_associated_SNPs_105009 0 0 0 0 0 unknown 0.500231598384322 0.500231643912302 0.8232816 9.10559583289228e-08 hm5C_site_58154 DeepMRMD:0.8232816;iRNA_m5C:9.10559583289228e-08 58155 chr1 53074041 53074041 1 + C A STAD 53074037 + 53074017 53074057 41 ACTGTGTCAGTGGAGGAGGTCAGACCCCAGATCACAGCGCT ACTGTGTCAGTGGAGGAGGTCAGAACCCAGATCACAGCGCT < 41bp 0.382709092902663 0.769947438613472 0.5563606 0.68608433 prediction 0.539894877226944 Functional Gain - GPX7 ENSG00000116157 CDS Human protein_coding chr1:53074037 chr1:53074041 nonsynonymous SNV 0.583 2 25 hm5C_associated_SNPs_105010 0 0 0 0 0 exosome 0.500231609832513 0.500231295169701 0.25944746 0 hm5C_site_58155 DeepMRMD:0.25944746;iRNA_m5C:0 58156 chr15 42632043 42632043 1 + T G UCEC 42632040 + 42632020 42632060 41 TCCGAGAAGCCATCAGAGAGCGCTATGGCCTCCTGCCATAT TCCGAGAAGCCATCAGAGAGCGCGATGGCCTCCTGCCATAT < 41bp 0.634724985569851 0.90467172336807 0.14682898 0.44580907 prediction 0.539893475596436 Functional Gain - GANC ENSG00000214013 CDS Human protein_coding chr15:42632040 chr15:42632043 nonsynonymous SNV 0.990 5 24 hm5C_associated_SNPs_105011 0 0 0 0 1 chromatin 0.500231643920941 0.500229401267853 0 0 hm5C_site_58156 DeepMRMD:0;iRNA_m5C:0 58157 chr3 38158981 38158981 1 + C A rs114193883 38158977 + 38158957 38158997 41 TGGGGGCAGCCAGAAGGCCCCAGGCGCCCGGCTTGCCCCAA TGGGGGCAGCCAGAAGGCCCCAGGAGCCCGGCTTGCCCCAA < 41bp 0.427311103803635 0.769944954941593 0.87388605 0.8878477 prediction 0.539889909883186 Functional Gain - DLEC1 ENSG00000008226 intronic Human protein_coding chr3:38158977 chr3:38158981 . . 0 25 hm5C_associated_SNPs_105012 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.0279233000000001 0 hm5C_site_58157 DeepMRMD:0.0279233000000001;iRNA_m5C:0 58158 chr3 171569799 171569799 1 + T G UCEC 171569796 + 171569776 171569816 41 TCACAACTGGTGTGCTTCTACTGTTGGCTTACAGAGAGTGG TCACAACTGGTGTGCTTCTACTGGTGGCTTACAGAGAGTGG < 41bp 0.386268521995266 0.769941160705867 0.12674388 0.171668 prediction 0.539882321411735 Functional Gain - TMEM212 ENSG00000186329 CDS Human protein_coding chr3:171569796 chr3:171569799 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_105013 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_58158 DeepMRMD:0;iRNA_m5C:0 58159 chr1 34329957 34329957 1 + T G SKCM 34329955 + 34329935 34329975 41 AATGGAGATCCATCTCAAAGCATGAAAAGGCCAAATATGAA AATGGAGATCCATCTCAAAGCAGGAAAAGGCCAAATATGAA < 41bp 0.58442709752557 0.854367294483359 0.029549032 0.3244407 prediction 0.539880393915578 Functional Gain - HMGB4 ENSG00000176256 CDS Human protein_coding chr1:34329955 chr1:34329957 nonsynonymous SNV 0.993 0 23 hm5C_associated_SNPs_105014 0 0 0 0 1 unknown 0.500231643896618 0.500231631325239 0 0 hm5C_site_58159 DeepMRMD:0;iRNA_m5C:0 58160 chr1 3830619 3830619 1 + C A rs4073647 3830615 + 3830595 3830635 41 ATGGGGTTTCACCGCGTGGCCAGGCTGGTCTCAAACTCCTG ATGGGGTTTCACCGCGTGGCCAGGATGGTCTCAAACTCCTG < 41bp 0.420614710649373 0.769927007614559 0.22271645 0.30690932 prediction 0.539854015229117 Functional Gain - LINC01134 ENSG00000236423 ncRNA_exonic Human lincRNA chr1:3830615 chr1:3830619 . . 0 25 hm5C_associated_SNPs_105015 0 0 0 8 0 unknown 0.500231643879131 0.500231643925346 0 9.24291754245132e-11 hm5C_site_58160 DeepMRMD:0;iRNA_m5C:9.24291754245132e-11 58161 chr5 140581362 140581362 1 + C G rs140365279 140581358 + 140581338 140581378 41 ACGGCTTCTCCCAGCCCTACCTGCCGCTCCCTGAGGCGGCA ACGGCTTCTCCCAGCCCTACCTGCGGCTCCCTGAGGCGGCA < 41bp 0.495247330844562 0.76992034060514 0.16923076 0.24011266 prediction 0.539840681210281 Functional Gain - PCDHB11 ENSG00000197479 CDS Human protein_coding chr5:140581358 chr5:140581362 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_105016 0 0 0 0 0 Nucleus 0.500231643954958 0.500231672012857 0 5.61157977863047e-08 hm5C_site_58161 DeepMRMD:0;iRNA_m5C:5.61157977863047e-08 58162 chr17 74722939 74722939 1 + C G rs577498542 74722935 + 74722915 74722955 41 CCCATCACTTCCGGTCGCGCCAGCCGCCCGTTGCCAGTTCT CCCATCACTTCCGGTCGCGCCAGCGGCCCGTTGCCAGTTCT < 41bp 0.500657389037797 0.770574461749113 0.43716282 0.8492118 prediction 0.539834145422634 Functional Gain - METTL23 ENSG00000181038 UTR5 Human protein_coding chr17:74722935 chr17:74722939 . . 0 25 hm5C_associated_SNPs_105017 0 0 1 0 1 Ribosome 0.500231770979741 0.500231647055361 0.6984236 0 hm5C_site_58162 DeepMRMD:0.6984236;iRNA_m5C:0 58163 chr16 335373 335373 1 + C G rs2685127 335369 + 335349 335389 41 ACCTGCTGCTGTTTGTCAACCAGACGCTGGCTGCGCACCGG ACCTGCTGCTGTTTGTCAACCAGAGGCTGGCTGCGCACCGG < 41bp 0.546064332238385 0.815977935399766 0.40563047 0.9216564 prediction 0.53982720632276 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335369 chr16:335373 nonsynonymous SNV 0.025 1 25 hm5C_associated_SNPs_105018 0 0 0 0 2 nucleolus 0.500231720003191 0.500232228695776 0.8433128 1.0173851692219e-06 hm5C_site_58163 DeepMRMD:0.8433128;iRNA_m5C:1.0173851692219e-06 58164 chr1 10510348 10510348 1 + T G rs556873478 10510346 + 10510326 10510366 41 ACGGCCACCGCTGCCCTGCCCCTGGAGGGTGGCCCCACCGG ACGGCCACCGCTGCCCTGCCCCGGGAGGGTGGCCCCACCGG < 41bp 0.605171477141809 0.875079692902183 0.60380733 0.9198446 prediction 0.539816431520748 Functional Gain - CORT ENSG00000241563 CDS Human protein_coding chr1:10510346 chr1:10510348 nonsynonymous SNV 0.203 2 23 hm5C_associated_SNPs_105019 0 0 0 0 1 Cytosol 0.500231643921021 0.500231643921092 0.63207454 1.4344081478157e-13 hm5C_site_58164 DeepMRMD:0.63207454;iRNA_m5C:1.4344081478157e-13 58165 chr2 131521341 131521341 1 + C G BLCA 131521337 + 131521317 131521357 41 ACAGTTTGCTCAGCACCCAGCAGGCAGGAGCTGTGGGCACA ACAGTTTGCTCAGCACCCAGCAGGGAGGAGCTGTGGGCACA < 41bp 0.538933517361261 0.808831109436796 0.85229415 0.91860676 prediction 0.53979518415107 Functional Gain - AMER3 ENSG00000178171 CDS Human protein_coding chr2:131521337 chr2:131521341 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_105020 0 0 0 0 0 Nucleus 0.500234202404846 0.500129539045728 0.13262522 0 hm5C_site_58165 DeepMRMD:0.13262522;iRNA_m5C:0 58166 chr19 11547248 11547248 1 + C G LUSC 11547244 + 11547224 11547264 41 GATGAGTCCAAGCCTTTCACCTGCCTGGACGGTTCGGCCAC GATGAGTCCAAGCCTTTCACCTGCGTGGACGGTTCGGCCAC < 41bp 0.541963702778815 0.811860854374918 0.026226252 0.03182116 prediction 0.539794303192206 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11547244 chr19:11547248 nonsynonymous SNV 0.492 3 25 hm5C_associated_SNPs_105021 0 0 1 0 2 Nucleus 0.500231636934745 0.500231647283579 0 2.06976671357495e-08 hm5C_site_58166 DeepMRMD:0;iRNA_m5C:2.06976671357495e-08 58167 chr19 49376525 49376525 1 + C G OV 49376524 + 49376504 49376544 41 AAGCACCCCATCAGGCTACCCCGTGGAGGGATGCCCACCCT AAGCACCCCATCAGGCTACCCGGTGGAGGGATGCCCACCCT < 41bp 0.455311140914629 0.769890784923686 0.24753705 0.852702 prediction 0.539781569847372 Functional Gain - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49376524 chr19:49376525 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_105022 0 0 1 0 1 Cytosol 0.500231643916765 0.500231643920785 0.705404 8.03956901052061e-12 hm5C_site_58167 DeepMRMD:0.705404;iRNA_m5C:8.03956901052061e-12 58168 chr16 81040153 81040153 1 + C A rs563480587 81040149 + 81040129 81040169 41 CACCAGCGTGTTCCAGCGAGCGCCCAGCCACCTCGCTCGCA CACCAGCGTGTTCCAGCGAGCGCCAAGCCACCTCGCTCGCA < 41bp 0.40636172517283 0.769881645033281 0.4217363 0.442774 prediction 0.539763290066563 Functional Gain - CENPN ENSG00000166451 UTR5 Human protein_coding chr16:81040149 chr16:81040153 . . 0 25 hm5C_associated_SNPs_105023 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58168 DeepMRMD:0;iRNA_m5C:0 58169 chr22 40797677 40797677 1 + C A SKCM 40797673 + 40797653 40797693 41 CAGGAGATCTTGGCCAAGTACACGCAGGTATAGCAGTTAGC CAGGAGATCTTGGCCAAGTACACGAAGGTATAGCAGTTAGC < 41bp 0.362459936152479 0.769863381516605 0.1628057 0.30620342 prediction 0.53972676303321 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40797673 chr22:40797677 nonsynonymous SNV 0.156 2 25 hm5C_associated_SNPs_105024 0 0 0 0 2 Cytosol 0.500220261880992 0.500232057673879 0 2.35915857731417e-05 hm5C_site_58169 DeepMRMD:0;iRNA_m5C:2.35915857731417e-05 58170 chr2 231751544 231751544 1 + C G rs1866229 231751543 + 231751523 231751563 41 CGGAGGCAGAGACGTGGGAGCCGATGAAGGTCGCACGCCAG CGGAGGCAGAGACGTGGGAGCGGATGAAGGTCGCACGCCAG < 41bp 0.529685153039718 0.799548472943131 0.89509505 0.90385973 prediction 0.539726639806826 Functional Gain - LOC151484 ENSG00000232520 ncRNA_exonic Human antisense chr2:231751543 chr2:231751544 . . 0 22 hm5C_associated_SNPs_105025 0 0 0 0 0 unknown 0.500231643921092 0.500231644267206 0.0175293599999999 6.92226720389044e-10 hm5C_site_58170 DeepMRMD:0.0175293599999999;iRNA_m5C:6.92226720389044e-10 58171 chr6 26252211 26252211 1 + C G UCEC 26252210 + 26252190 26252230 41 TGGGGAACTGGCCAAGCACGCCGTGTCCGAGGGCACTAAGG TGGGGAACTGGCCAAGCACGCGGTGTCCGAGGGCACTAAGG < 41bp 0.484225707917945 0.769857343821439 0.7970928 0.90873134 prediction 0.539714687642878 Functional Gain - HIST1H2BH ENSG00000197459 CDS Human other chr6:26252210 chr6:26252211 synonymous SNV . 0 22 hm5C_associated_SNPs_105026 0 0 1 0 0 Nucleus 0.500231638608333 0.500231655190566 0.22327708 3.31644665063635e-08 hm5C_site_58171 DeepMRMD:0.22327708;iRNA_m5C:3.31644665063635e-08 58172 chr22 41077541 41077541 1 + T C STAD 41077539 + 41077519 41077559 41 TTTGCCCTGCCTTTTGTGGTCATCACAGCCGCATACGTGAG TTTGCCCTGCCTTTTGTGGTCACCACAGCCGCATACGTGAG < 41bp 0.502051143616526 0.771907158775444 0.34941798 0.24920326 prediction 0.539712030317836 Functional Gain - MCHR1 ENSG00000128285 CDS Human protein_coding chr22:41077539 chr22:41077541 nonsynonymous SNV 0.846 4 23 hm5C_associated_SNPs_105027 0 0 0 0 0 exosome 0.500230372949803 0.500231959193436 0 3.1724872662231e-06 hm5C_site_58172 DeepMRMD:0;iRNA_m5C:3.1724872662231e-06 58173 chr5 118691737 118691737 1 + C G rs3797340 118691736 + 118691716 118691756 41 AGAGCGAACTTGCGGCTCGTCCGAGTACATGTGAGCGGTAA AGAGCGAACTTGCGGCTCGTCGGAGTACATGTGAGCGGTAA < 41bp 0.486213491604527 0.769851792795701 0.064445585 0.73731625 prediction 0.539703585591402 Functional Gain - TNFAIP8 ENSG00000145779 UTR5 Human protein_coding chr5:118691736 chr5:118691737 . . 0 22 hm5C_associated_SNPs_105028 0 0 0 0 1 Cytosol 0.500231712536522 0.500231643963567 0.4746325 0 hm5C_site_58173 DeepMRMD:0.4746325;iRNA_m5C:0 58174 chr2 101186155 101186155 1 + T A COAD 101186151 + 101186131 101186171 41 GTTACCAAAGCTGGCGAGGGCTTGTGGGTCATCTTGCACCT GTTACCAAAGCTGGCGAGGGCTTGAGGGTCATCTTGCACCT < 41bp 0.583794655943345 0.853643351054528 0.14449847 0.23824993 prediction 0.539697390222366 Functional Gain - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101186151 chr2:101186155 nonsynonymous SNV 0.931 4 25 hm5C_associated_SNPs_105029 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58174 DeepMRMD:0;iRNA_m5C:0 58175 chr13 114292034 114292034 1 + C A UCEC 114292030 + 114292010 114292050 41 AGGATATCCGGAAGCTTCTACAGCCGTCTGTCCTGTGGAAC AGGATATCCGGAAGCTTCTACAGCAGTCTGTCCTGTGGAAC < 41bp 0.370839846598847 0.76983782517107 0.5277995 0.7400434 prediction 0.539675650342139 Functional Gain - TFDP1 ENSG00000198176 CDS Human protein_coding chr13:114292030 chr13:114292034 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105030 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643906209 0.4244878 0 hm5C_site_58175 DeepMRMD:0.4244878;iRNA_m5C:0 58176 chrX 152914771 152914771 1 + T G ESCA 152914768 + 152914748 152914788 41 TGCCGGCTCCAGCATGGCGCCGGTGCCCGGTCCAGTGCCCG TGCCGGCTCCAGCATGGCGCCGGGGCCCGGTCCAGTGCCCG < 41bp 0.369805796282963 0.769830566503505 0.36554444 0.73374164 prediction 0.53966113300701 Functional Gain - DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152914768 chrX:152914771 nonsynonymous SNV 0.005 0 24 hm5C_associated_SNPs_105031 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921093 0.46748328 2.22044604925031e-16 hm5C_site_58176 DeepMRMD:0.46748328;iRNA_m5C:2.22044604925031e-16 58177 chr2 128367562 128367562 1 + C G BLCA 128367561 + 128367541 128367581 41 CTGGGCAGGGAGCACGGTGCCCAGGTTCCACAGCACAGTAG CTGGGCAGGGAGCACGGTGCCGAGGTTCCACAGCACAGTAG < 41bp 0.477446262128741 0.769826705683625 0.19573143 0.59365404 prediction 0.539653411367249 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128367561 chr2:128367562 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_105032 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.18730808 0 hm5C_site_58177 DeepMRMD:0.18730808;iRNA_m5C:0 58178 chrX 106845567 106845567 1 + C G LUAD 106845563 + 106845543 106845583 41 CCAAGGAGGTAGAGGCAAGCCTCCCCATAGCCTTGGGTCCC CCAAGGAGGTAGAGGCAAGCCTCCGCATAGCCTTGGGTCCC < 41bp 0.500883066491257 0.770707105493479 0.46761113 0.2823329 prediction 0.539648078004445 Functional Gain - FRMPD3 ENSG00000147234 CDS Human protein_coding chrX:106845563 chrX:106845567 nonsynonymous SNV 0.033 1 25 hm5C_associated_SNPs_105033 0 0 0 0 0 exosome 0.500231643943213 0.500231643902329 0 0 hm5C_site_58178 DeepMRMD:0;iRNA_m5C:0 58179 chr22 25007196 25007196 1 + T G CESC 25007193 + 25007173 25007213 41 CCGTGGCCGCGGATGCCAAGCAGTGCTCGAAGATTGGGAGG CCGTGGCCGCGGATGCCAAGCAGGGCTCGAAGATTGGGAGG < 41bp 0.639623070192371 0.909446438770477 0.71571016 0.91037655 prediction 0.539646737156212 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25007193 chr22:25007196 nonsynonymous SNV 0.588 3 24 hm5C_associated_SNPs_105034 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.38933278 0 hm5C_site_58179 DeepMRMD:0.38933278;iRNA_m5C:0 58180 chr19 4231316 4231316 1 + T A LUAD 4231312 + 4231292 4231332 41 AGCCCCGTGTCCTTCATTGCCACGTACAGGTCGGAGAGCCT AGCCCCGTGTCCTTCATTGCCACGAACAGGTCGGAGAGCCT < 41bp 0.583935662078811 0.853756363068768 0.8702607 0.36470318 prediction 0.539641401979914 Functional Gain - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4231312 chr19:4231316 nonsynonymous SNV 0.957 3 25 hm5C_associated_SNPs_105035 0 0 0 0 1 Cytosol 0.500234558284523 0.50023176460189 0 0 hm5C_site_58180 DeepMRMD:0;iRNA_m5C:0 58181 chr1 107599898 107599898 1 + C A COAD 107599894 + 107599874 107599914 41 GGAGGGCGGTCTTCTCCTGCCGGCCTCCGCCGAGCTCTTCA GGAGGGCGGTCTTCTCCTGCCGGCATCCGCCGAGCTCTTCA < 41bp 0.638962926068923 0.908778391782509 0.26570773 0.33567736 prediction 0.539630931427173 Functional Gain - PRMT6 ENSG00000198890 CDS Human protein_coding chr1:107599894 chr1:107599898 synonymous SNV . 0 25 hm5C_associated_SNPs_105036 0 0 0 0 0 Ribosome 0.500231643921095 0.500231643921092 0 0 hm5C_site_58181 DeepMRMD:0;iRNA_m5C:0 58182 chr19 34949770 34949770 1 + C A SARC 34949766 + 34949746 34949786 41 AATTGTTATGTATGTGCCAGCAAGCCAGAGGTGACTGTGCG AATTGTTATGTATGTGCCAGCAAGACAGAGGTGACTGTGCG < 41bp 0.369328607645372 0.76980856595986 0.18713942 0.20798531 prediction 0.53961713191972 Functional Gain - UBA2 ENSG00000126261 CDS Human protein_coding chr19:34949766 chr19:34949770 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105037 0 0 1 0 2 Cytosol 0.500231643921125 0.500231643911272 0 0 hm5C_site_58182 DeepMRMD:0;iRNA_m5C:0 58183 chr10 103988708 103988708 1 + T C UCEC 103988706 + 103988686 103988726 41 GTGCCTGCAGGAGGCTGGTTCGTCACCATGAACTTTGGTGT GTGCCTGCAGGAGGCTGGTTCGCCACCATGAACTTTGGTGT < 41bp 0.505941070832392 0.77574855194546 0.022038251 0.047381043 prediction 0.539614962226136 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103988706 chr10:103988708 nonsynonymous SNV 0.962 1 23 hm5C_associated_SNPs_105038 0 0 0 0 0 exosome 0.500231639465486 0.500231643875293 0 8.81961459420211e-09 hm5C_site_58183 DeepMRMD:0;iRNA_m5C:8.81961459420211e-09 58184 chr17 39262039 39262039 1 + C G KIRP 39262035 + 39262015 39262055 41 TCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAAGCCCCAGT TCGCCCCAGCTGCTGTGTGTCCAGGTGCTGCAAGCCCCAGT < 41bp 0.510574196550927 0.780377256846703 0.2623703 0.857742 prediction 0.539606120591552 Functional Gain - KRTAP4-9 ENSG00000212722 CDS Human protein_coding chr17:39262035 chr17:39262039 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105039 0 0 0 0 0 unknown 0.500289213387451 0.500231657692299 0.715484 0 hm5C_site_58184 DeepMRMD:0.715484;iRNA_m5C:0 58185 chr4 3503058 3503058 1 + C A rs183827227 3503054 + 3503034 3503074 41 CACCATGCCCGCTCCTGAGACTGGCGGCTCAGACACTCCCG CACCATGCCCGCTCCTGAGACTGGAGGCTCAGACACTCCCG < 41bp 0.579736489870485 0.849515528675418 0.35737294 0.42184922 prediction 0.539558077609866 Functional Gain - DOK7 ENSG00000175920 downstream Human protein_coding chr4:3503054 chr4:3503058 . . 0 25 hm5C_associated_SNPs_105040 0 0 0 0 0 nucleus 0.500231643922346 0.500231643921114 0 0 hm5C_site_58185 DeepMRMD:0;iRNA_m5C:0 58186 chrX 24382024 24382024 1 + C A rs113589837 24382020 + 24382000 24382040 41 CAGAAGAGCCAGAAGTCTCCCTGGCAGCCCTTCCCAGATGA CAGAAGAGCCAGAAGTCTCCCTGGAAGCCCTTCCCAGATGA < 41bp 0.63920201323409 0.908979965517193 0.17248437 0.353109 prediction 0.539555904566206 Functional Gain - SUPT20HL1 ENSG00000223731 ncRNA_exonic Human processed_pseudogene chrX:24382020 chrX:24382024 . . 0 25 hm5C_associated_SNPs_105041 0 0 0 0 0 unknown 0.500231643921035 0.500231643920966 0 0 hm5C_site_58186 DeepMRMD:0;iRNA_m5C:0 58187 chr4 77228006 77228006 1 + C A rs1053464 77228002 + 77227982 77228022 41 TTGGCTGCTGCGGGGCGGCCCTGGCGACACCGGGAAGGACG TTGGCTGCTGCGGGGCGGCCCTGGAGACACCGGGAAGGACG < 41bp 0.623284164738381 0.893056511996971 0.77135456 0.78562117 prediction 0.53954469451718 Functional Gain - STBD1 ENSG00000118804 CDS Human protein_coding chr4:77228002 chr4:77228006 synonymous SNV . 0 25 hm5C_associated_SNPs_105042 0 0 1 0 0 exosome 0.500231644368769 0.500231661544897 0.0285332199999999 3.43522561507825e-08 hm5C_site_58187 DeepMRMD:0.0285332199999999;iRNA_m5C:3.43522561507825e-08 58188 chr11 126225632 126225632 1 + C G rs534154324 126225631 + 126225611 126225651 41 CCCGCGCCCGGGACAGGGACCCGGCCGAGTCGAGCCGTCGC CCCGCGCCCGGGACAGGGACCGGGCCGAGTCGAGCCGTCGC < 41bp 0.530654280892803 0.800409289765337 0.896191 0.91868913 prediction 0.539510017745068 Functional Gain - ST3GAL4 ENSG00000110080 UTR5 Human protein_coding chr11:126225631 chr11:126225632 . . 0 22 hm5C_associated_SNPs_105043 0 0 1 0 0 Ribosome 0.500231715962651 0.50023163316002 0.04499626 0 hm5C_site_58188 DeepMRMD:0.04499626;iRNA_m5C:0 58189 chr6 41621152 41621152 1 + T A HNSC 41621148 + 41621128 41621168 41 TGCGCCACCTGTGGCTCCTGCAGCTCGGAGGACTCGTGCCT TGCGCCACCTGTGGCTCCTGCAGCACGGAGGACTCGTGCCT < 41bp 0.450437364484575 0.769745132334123 0.29533234 0.30342954 prediction 0.539490264668246 Functional Gain - MDFI ENSG00000112559 CDS Human protein_coding chr6:41621148 chr6:41621152 nonsynonymous SNV 0.977 2 25 hm5C_associated_SNPs_105044 0 0 0 0 1 Cytosol 0.500232477838152 0.500231180457825 0 0 hm5C_site_58189 DeepMRMD:0;iRNA_m5C:0 58190 chr3 189526213 189526213 1 + C A HNSC 189526209 + 189526189 189526229 41 GCCCAGCTCCACCTTCGATGCTCTCTCTCCATCACCCGCCA GCCCAGCTCCACCTTCGATGCTCTATCTCCATCACCCGCCA < 41bp 0.360800091149213 0.769740775581298 0.05395776 0.87622213 prediction 0.539481551162595 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189526209 chr3:189526213 synonymous SNV . 0 25 hm5C_associated_SNPs_105045 0 0 0 0 0 chromatin 0.500231631693841 0.500231643920938 0.75244426 2.44541951133215e-08 hm5C_site_58190 DeepMRMD:0.75244426;iRNA_m5C:2.44541951133215e-08 58191 chr19 9361871 9361871 1 + C A LUAD 9361867 + 9361847 9361887 41 CGGTCCTCGCTGGGCTGTTCCTGTCCATGTACCTGGTCACG CGGTCCTCGCTGGGCTGTTCCTGTACATGTACCTGGTCACG < 41bp 0.383539959580692 0.769725477023683 0.12858558 0.16488469 prediction 0.539450954047365 Functional Gain - OR7E24 ENSG00000237521 CDS Human protein_coding chr19:9361867 chr19:9361871 nonsynonymous SNV 0.941 1 25 hm5C_associated_SNPs_105046 0 0 0 0 0 unknown 0.500059002751085 0.500231632336178 0 0.000345259170186463 hm5C_site_58191 DeepMRMD:0;iRNA_m5C:0.000345259170186463 58192 chr12 82792930 82792930 1 + T C COAD 82792928 + 82792908 82792948 41 TCAGAAACCAAATGGAAACCCTTCATTCTCAGCCACATCAA TCAGAAACCAAATGGAAACCCTCCATTCTCAGCCACATCAA < 41bp 0.526486394621334 0.796208718773814 0.14012569 0.95285904 prediction 0.53944464830496 Functional Gain - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82792928 chr12:82792930 synonymous SNV . 0 23 hm5C_associated_SNPs_105047 0 0 0 0 0 cytosol 0.500225835199071 0.500231620468819 0.90571808 1.15705394974075e-05 hm5C_site_58192 DeepMRMD:0.90571808;iRNA_m5C:1.15705394974075e-05 58193 chr18 52560108 52560108 1 + C A rs118175558 52560104 + 52560084 52560124 41 ACCTGTACAGGTAGATGAACCAGGCGAGAGTTTTAATCAGC ACCTGTACAGGTAGATGAACCAGGAGAGAGTTTTAATCAGC < 41bp 0.5714583162921 0.841179783374085 0.76382005 0.88383853 prediction 0.539442934163971 Functional Gain - RAB27B ENSG00000267112 ncRNA_intronic Human antisense chr18:52560104 chr18:52560108 . . 0 25 hm5C_associated_SNPs_105048 0 0 0 0 0 exosome 0.500231489011302 0.5002313953475 0.24003696 0 hm5C_site_58193 DeepMRMD:0.24003696;iRNA_m5C:0 58194 chr12 6884007 6884007 1 + T G SKCM 6884005 + 6883985 6884025 41 AGAGATGGCTTCAACGTCTCCATCATGTATAACCTCACTGT AGAGATGGCTTCAACGTCTCCAGCATGTATAACCTCACTGT < 41bp 0.433896760142721 0.769719037788486 0.03662771 0.09313336 prediction 0.539438075576971 Functional Gain - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6884005 chr12:6884007 nonsynonymous SNV 0.725 1 23 hm5C_associated_SNPs_105049 0 0 0 0 1 exosome 0.500231643951835 0.500231644310253 0 7.16836368042095e-10 hm5C_site_58194 DeepMRMD:0;iRNA_m5C:7.16836368042095e-10 58195 chr5 170736513 170736513 1 + C A KIRC 170736509 + 170736489 170736529 41 CGCCAGCTACCTGGGAGGGCCCCCCGGGGGCCGTCCGGGCG CGCCAGCTACCTGGGAGGGCCCCCAGGGGGCCGTCCGGGCG < 41bp 0.380971519237182 0.769698963319692 0.34039083 0.5126721 prediction 0.539397926639384 Functional Gain - TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736509 chr5:170736513 synonymous SNV . 0 25 hm5C_associated_SNPs_105050 0 0 0 0 0 exosome 0.500231643921509 0.500231696836412 0.0253441999999999 1.05829807139912e-07 hm5C_site_58195 DeepMRMD:0.0253441999999999;iRNA_m5C:1.05829807139912e-07 58196 chr2 169764111 169764111 1 + C G LUSC 169764110 + 169764090 169764130 41 CAGAGGCCTTTGAACACACTCCAGGCATCCAAACGGCCAGT CAGAGGCCTTTGAACACACTCGAGGCATCCAAACGGCCAGT < 41bp 0.458655951308063 0.76968330706089 0.17770803 0.8640076 prediction 0.539366614121781 Functional Gain - G6PC2 ENSG00000152254 CDS Human protein_coding chr2:169764110 chr2:169764111 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_105051 0 0 0 3 1 Nucleus 0.500231644008123 0.500231643921135 0.7280152 0 hm5C_site_58196 DeepMRMD:0.7280152;iRNA_m5C:0 58197 chr15 52005588 52005588 1 + T C LUSC 52005586 + 52005566 52005606 41 ATATTGAATGGTTGAAGAAACATGACAAAAAGGGAAATAAA ATATTGAATGGTTGAAGAAACACGACAAAAAGGGAAATAAA < 41bp 0.499875004540924 0.769678436007205 0.7218915 0.6627698 prediction 0.539356872014409 Functional Gain - SCG3 ENSG00000104112 CDS Human protein_coding chr15:52005586 chr15:52005588 synonymous SNV . 0 23 hm5C_associated_SNPs_105052 0 0 0 0 2 nucleolus 0.500231643921962 0.500231643921516 0 0 hm5C_site_58197 DeepMRMD:0;iRNA_m5C:0 58198 chr9 79634727 79634727 1 + C A LUAD 79634723 + 79634703 79634743 41 GAGCGCTTCCCCTACTACCGCGAGCACACACAGCGCTGGCA GAGCGCTTCCCCTACTACCGCGAGAACACACAGCGCTGGCA < 41bp 0.401244226842358 0.76967539727137 0.55320644 0.70573497 prediction 0.53935079454274 Functional Gain - FOXB2 ENSG00000204612 CDS Human protein_coding chr9:79634723 chr9:79634727 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105053 0 0 0 0 0 unknown 0.500231641387944 0.500208316970874 0.30505706 0 hm5C_site_58198 DeepMRMD:0.30505706;iRNA_m5C:0 58199 chr5 140595295 140595295 1 + T A rs142003231 140595291 + 140595271 140595311 41 GGGTTCCAGTTCCGCGTGGGCGCTTCAGACCACGGCTCCCC GGGTTCCAGTTCCGCGTGGGCGCTACAGACCACGGCTCCCC < 41bp 0.467214265279327 0.769646764776774 0.24760449 0.30856425 prediction 0.539293529553549 Functional Gain - PCDHB13 ENSG00000187372 CDS Human protein_coding chr5:140595291 chr5:140595295 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105054 0 0 0 0 0 exosome 0.500231643900901 0.500231643913997 0 2.61917154631419e-11 hm5C_site_58199 DeepMRMD:0;iRNA_m5C:2.61917154631419e-11 58200 chr1 109780612 109780612 1 + C G rs11547492 109780611 + 109780591 109780631 41 GCACCCATTCATCCCCCTGCCCCCATCTGACTGCGTAGCTG GCACCCATTCATCCCCCTGCCGCCATCTGACTGCGTAGCTG < 41bp 0.524770430519283 0.794414216597345 0.11746046 0.46881548 prediction 0.539287572156123 Functional Gain - SARS ENSG00000031698 UTR3 Human protein_coding chr1:109780611 chr1:109780612 . . 0 22 hm5C_associated_SNPs_105055 0 0 1 0 0 Ribosome 0.500231645246038 0.500405928254615 0 0.000348566017154495 hm5C_site_58200 DeepMRMD:0;iRNA_m5C:0.000348566017154495 58201 chr16 69965751 69965751 1 + T C COAD 69965749 + 69965729 69965769 41 CTGCGCCGCCGGCTCTACATCATCATGCGTGGCGAGGAGGG CTGCGCCGCCGGCTCTACATCACCATGCGTGGCGAGGAGGG < 41bp 0.549606704664153 0.819238729220981 0.065858155 0.08395165 prediction 0.539264049113657 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69965749 chr16:69965751 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105056 0 0 1 0 2 Ribosome 0.500230212157558 0.500231700269601 0 2.97622408451659e-06 hm5C_site_58201 DeepMRMD:0;iRNA_m5C:2.97622408451659e-06 58202 chr14 39650381 39650381 1 + T A SKCM 39650377 + 39650357 39650397 41 CCCCAGCTTCAGCTTCAATCCCAGTCCCAACCAGTACTCCA CCCCAGCTTCAGCTTCAATCCCAGACCCAACCAGTACTCCA < 41bp 0.462930728739467 0.769621269758564 0.34282577 0.31909612 prediction 0.539242539517128 Functional Gain - PNN ENSG00000100941 CDS Human protein_coding chr14:39650377 chr14:39650381 nonsynonymous SNV 0.342 0 25 hm5C_associated_SNPs_105057 0 0 1 0 0 Nucleus 0.500231477858517 0.500230699466107 0 0 hm5C_site_58202 DeepMRMD:0;iRNA_m5C:0 58203 chr1 228401265 228401265 1 + G C rs552489989 228401266 - 228401246 228401286 41 TACTTGGCGCTCGCCCACAACCGCGTCTCCTCCTTGAACCA TACTTGGCGCTCGCCCACAACGGCGTCTCCTCCTTGAACCA < 41bp 0.469890805161899 0.769608024894221 0.27583754 0.9165154 prediction 0.539216049788442 Functional Gain - OBSCN ENSG00000154358;ENSG00000162913 CDS Human other chr1:228401266 chr1:228401265 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_105058 0 0 0 0 0 Ribosome 0.500231660590053 0.500231643920039 0.8330308 0 hm5C_site_58203 DeepMRMD:0.8330308;iRNA_m5C:0 58204 chr12 69995119 69995119 1 + C A UCEC 69995115 + 69995095 69995135 41 ACCCCTGTTAAGCATTCCCACGTGCTGTCGATCTTTGGACC ACCCCTGTTAAGCATTCCCACGTGATGTCGATCTTTGGACC < 41bp 0.376706681207942 0.769605908822093 0.39126623 0.45579445 prediction 0.539211817644187 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69995115 chr12:69995119 nonsynonymous SNV 0.126 1 25 hm5C_associated_SNPs_105059 0 0 1 2 1 Nucleus 0.500231643921091 0.500231644124792 0 4.0740122386751e-10 hm5C_site_58204 DeepMRMD:0;iRNA_m5C:4.0740122386751e-10 58205 chr17 41064737 41064737 1 + C A rs161620 41064733 + 41064713 41064753 41 CTGGGCTCAAGCAGTCCTCCCACCCTACCACAGCGTCCCGC CTGGGCTCAAGCAGTCCTCCCACCATACCACAGCGTCCCGC < 41bp 0.404304479647493 0.769604568896523 0.10465816 0.21242282 prediction 0.539209137793045 Functional Gain - G6PC ENSG00000131482 UTR3 Human protein_coding chr17:41064733 chr17:41064737 . . 0 25 hm5C_associated_SNPs_105060 1 0 1 0 0 Nucleus 0.500231643921093 0.500231643920784 0 0 hm5C_site_58205 DeepMRMD:0;iRNA_m5C:0 Glycogen storage disease, type I Glycogen storage disease, type I 58206 chr19 58850153 58850153 1 + C A MESO 58850149 + 58850129 58850169 41 TTCAGCCGGAGCACTCACCTCGCCCAGCACCAGGTTGTCCA TTCAGCCGGAGCACTCACCTCGCCAAGCACCAGGTTGTCCA < 41bp 0.343283836422411 0.769599348095912 0.13599342 0.8914809 prediction 0.539198696191823 Functional Gain - ZSCAN22 ENSG00000182318 CDS Human protein_coding chr19:58850149 chr19:58850153 nonsynonymous SNV 0.449 0 25 hm5C_associated_SNPs_105061 0 0 0 0 0 Cytosol 0.500229982373691 0.50023168413356 0.7829618 3.40351973804331e-06 hm5C_site_58206 DeepMRMD:0.7829618;iRNA_m5C:3.40351973804331e-06 58207 chr1 152648605 152648605 1 + T A UCEC 152648601 + 152648581 152648621 41 CAAATGCCCACCACAGTGCCCAGCTCCATGTTTCCCTGCAG CAAATGCCCACCACAGTGCCCAGCACCATGTTTCCCTGCAG < 41bp 0.478281132621242 0.769597979677319 0.066390485 0.115918815 prediction 0.539195959354637 Functional Gain - LCE2C ENSG00000187180 CDS Human protein_coding chr1:152648601 chr1:152648605 synonymous SNV . 0 25 hm5C_associated_SNPs_105062 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58207 DeepMRMD:0;iRNA_m5C:0 58208 chr16 84224890 84224890 1 + C G rs200808724 84224886 + 84224866 84224906 41 CGACGGCAGTCGTAGGAAGCCCCGCCTGGCTGCATCGTTGC CGACGGCAGTCGTAGGAAGCCCCGGCTGGCTGCATCGTTGC < 41bp 0.496719020877616 0.769594594160661 0.090921104 0.2706602 prediction 0.539189188321323 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84224886 chr16:84224890 synonymous SNV . 0 25 hm5C_associated_SNPs_105063 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58208 DeepMRMD:0;iRNA_m5C:0 58209 chr6 43251485 43251485 1 + C G rs201098083 43251484 + 43251464 43251504 41 TCTGCCCTGTCTGGGGCCCCCCGGGAAACCCCCTCAGAGAT TCTGCCCTGTCTGGGGCCCCCGGGGAAACCCCCTCAGAGAT < 41bp 0.58045193584092 0.85003638470319 0.89774466 0.92528284 prediction 0.539168897724538 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43251484 chr6:43251485 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_105064 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0550763600000002 0 hm5C_site_58209 DeepMRMD:0.0550763600000002;iRNA_m5C:0 58210 chr22 30766362 30766362 1 + G T UCEC 30766366 - 30766346 30766386 41 TTCAGGGCTCCTGGCTGGCTCGCCCTTGGTGGTGGGCTTGG TTCAGGGCTCCTGGCTGGCTCGCCATTGGTGGTGGGCTTGG < 41bp 0.368915881437784 0.769580791336415 0.16258079 0.91929483 prediction 0.539161582672831 Functional Gain - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30766366 chr22:30766362 nonsynonymous SNV 0.959 1 25 hm5C_associated_SNPs_105065 0 0 1 0 0 exosome 0.500231643922438 0.500231643914395 0.83858966 0 hm5C_site_58210 DeepMRMD:0.83858966;iRNA_m5C:0 58211 chr10 26505269 26505269 1 + C A rs568851386 26505265 + 26505245 26505285 41 CGCACTTCCCGCCTCTGGCTCGCCCGAGGACGCGCTGGCAC CGCACTTCCCGCCTCTGGCTCGCCAGAGGACGCGCTGGCAC < 41bp 0.616084412825514 0.885664722965987 0.25060135 0.8568845 prediction 0.539160620280946 Functional Gain - GAD2 ENSG00000136750 UTR5 Human protein_coding chr10:26505265 chr10:26505269 . . 0 25 hm5C_associated_SNPs_105066 0 0 0 0 0 exosome 0.500231643889061 0.500231643921034 0.713769 6.39464037277548e-11 hm5C_site_58211 DeepMRMD:0.713769;iRNA_m5C:6.39464037277548e-11 58212 chr19 46375466 46375466 1 + C G UCEC 46375465 + 46375445 46375485 41 CCTCAGGACCCCTGGCACCCCCAGCACCTGCAGCCCCCCTG CCTCAGGACCCCTGGCACCCCGAGCACCTGCAGCCCCCCTG < 41bp 0.557891851450177 0.827468832920221 0.18338197 0.47648674 prediction 0.539153962940088 Functional Gain - FOXA3 ENSG00000170608 CDS Human protein_coding chr19:46375465 chr19:46375466 nonsynonymous SNV 0.664 1 22 hm5C_associated_SNPs_105067 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_58212 DeepMRMD:0;iRNA_m5C:0 58213 chr1 243480092 243480092 1 + T G LGG 243480090 + 243480070 243480110 41 TTGATGTCTGCACTAGTTTCCGTAAGGAGCAGCTTGGCAGA TTGATGTCTGCACTAGTTTCCGGAAGGAGCAGCTTGGCAGA < 41bp 0.444944586381148 0.769571237390094 0.28772318 0.891802 prediction 0.539142474780187 Functional Gain - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243480090 chr1:243480092 nonsynonymous SNV 0.364 2 23 hm5C_associated_SNPs_105068 0 0 1 0 1 chromatin 0.500231643921098 0.500231643921092 0.783604 0 hm5C_site_58213 DeepMRMD:0.783604;iRNA_m5C:0 58214 chr12 48579226 48579226 1 + C G rs146501167 48579225 + 48579205 48579245 41 GGGCTTAGAGAACAAAGAGCCCGGTTCACAGGCAGAGACTC GGGCTTAGAGAACAAAGAGCCGGGTTCACAGGCAGAGACTC < 41bp 0.496184849495016 0.769553864362371 0.5141123 0.9114832 prediction 0.539107728724743 Functional Gain - CCDC184 ENSG00000177875 UTR3 Human protein_coding chr12:48579225 chr12:48579226 . . 0 22 hm5C_associated_SNPs_105069 0 0 0 0 0 exosome 0.500231643921043 0.500231643717036 0.7947418 0 hm5C_site_58214 DeepMRMD:0.7947418;iRNA_m5C:0 58215 chr1 25627552 25627552 1 + C G rs1053355 25627548 + 25627528 25627568 41 AGGGAACGGAGGATAAAGATCAGACAGCAACGATACCCAGT AGGGAACGGAGGATAAAGATCAGAGAGCAACGATACCCAGT < 41bp 0.469757782123281 0.769544257588288 0.4286152 0.8873707 prediction 0.539088515176577 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25627548 chr1:25627552 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105070 2 0 0 0 1 Nucleus 0.500231643921121 0.500231643921122 0.7747414 1.99840144432528e-15 hm5C_site_58215 DeepMRMD:0.7747414;iRNA_m5C:1.99840144432528e-15 Weak RhD expression Weak RhD expression 58216 chr3 122128615 122128615 1 + C A UCEC 122128611 + 122128591 122128631 41 CCAAAGACACGAGACTTTAACAAGCTTGAACTTAGAAAAGA CCAAAGACACGAGACTTTAACAAGATTGAACTTAGAAAAGA < 41bp 0.623699149275604 0.893241376645208 0.76284873 0.87505174 prediction 0.539084454739207 Functional Gain - FAM162A ENSG00000114023 CDS Human protein_coding chr3:122128611 chr3:122128615 nonsynonymous SNV 0.834 0 25 hm5C_associated_SNPs_105071 0 0 1 0 1 Ribosome 0.500231633560127 0.500231643921983 0.22440602 2.07237123017734e-08 hm5C_site_58216 DeepMRMD:0.22440602;iRNA_m5C:2.07237123017734e-08 58217 chr16 2650389 2650389 1 + C G rs545819504 2650385 + 2650365 2650405 41 GCGGAGGGAGGCTGTGGTCGCTGCCGGCCTAGGTGTCCCAG GCGGAGGGAGGCTGTGGTCGCTGCGGGCCTAGGTGTCCCAG < 41bp 0.529214670209306 0.79875395336851 0.2189449 0.37030533 prediction 0.539078566318408 Functional Gain - PDPK1 ENSG00000140992 UTR3 Human protein_coding chr16:2650385 chr16:2650389 . . 0 25 hm5C_associated_SNPs_105072 0 0 1 0 0 Ribosome 0.500231643921068 0.500231643921092 0 4.9293902293357e-14 hm5C_site_58217 DeepMRMD:0;iRNA_m5C:4.9293902293357e-14 58218 chr1 4772050 4772050 1 + C A rs148753165 4772046 + 4772026 4772066 41 TCAGCTCGCCGTGGACCTGCCCGCCTGTGAGGCCCTGGGCC TCAGCTCGCCGTGGACCTGCCCGCATGTGAGGCCCTGGGCC < 41bp 0.3607799950548 0.769530824280072 0.085490674 0.13040033 prediction 0.539061648560144 Functional Gain - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4772046 chr1:4772050 synonymous SNV . 0 25 hm5C_associated_SNPs_105073 0 0 0 0 1 exosome 0.500231643915807 0.500231643921699 0 1.1785017406396e-11 hm5C_site_58218 DeepMRMD:0;iRNA_m5C:1.1785017406396e-11 58219 chr1 51435058 51435058 1 + C A rs566197908 51435054 + 51435034 51435074 41 AGCCGCAATGCTGCCGCGAGCTGCCCCAGCAGTCCGGGCTC AGCCGCAATGCTGCCGCGAGCTGCACCAGCAGTCCGGGCTC < 41bp 0.559359560414365 0.828878651167767 0.06793493 0.13765368 prediction 0.539038181506805 Functional Gain - CDKN2C ENSG00000123080 UTR5 Human protein_coding chr1:51435054 chr1:51435058 . . 0 25 hm5C_associated_SNPs_105074 0 0 1 0 0 Cytosol 0.500231643921092 0.500229165361488 0 0 hm5C_site_58219 DeepMRMD:0;iRNA_m5C:0 58220 chr2 10008516 10008516 1 + C G DLBC 10008515 + 10008495 10008535 41 GCGGAGTCTCAGTCTGACATCCACACTCGAAAACCTTTCCC GCGGAGTCTCAGTCTGACATCGACACTCGAAAACCTTTCCC < 41bp 0.551383439029361 0.820892496538788 0.047044337 0.09872621 prediction 0.539018115018853 Functional Gain - TAF1B ENSG00000115750 CDS Human protein_coding chr2:10008515 chr2:10008516 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_105075 0 0 1 0 1 Endoplasmic reticulum 0.500231643921009 0.500231643921092 0 1.65867319878998e-13 hm5C_site_58220 DeepMRMD:0;iRNA_m5C:1.65867319878998e-13 58221 chr22 41077879 41077879 1 + G C LUSC 41077883 - 41077863 41077903 41 CGTCAGCCGTCTGAGCGTTGCTGACAGCGCGAAGCTGCCCC CGTCAGCCGTCTGAGCGTTGCTGAGAGCGCGAAGCTGCCCC < 41bp 0.522139523687358 0.791646877208243 0.05000958 0.18408504 prediction 0.539014707041771 Functional Gain - MCHR1 ENSG00000128285 CDS Human protein_coding chr22:41077883 chr22:41077879 nonsynonymous SNV 0.715 0 25 hm5C_associated_SNPs_105076 0 0 0 0 0 exosome 0.500231765656465 0.500231643921093 0 0 hm5C_site_58221 DeepMRMD:0;iRNA_m5C:0 58222 chr4 158256905 158256905 1 + C A KIRC 158256901 + 158256881 158256921 41 ATGAGGGCTACTGTGTTGACCTGGCTGCAGAAATCGCCAAA ATGAGGGCTACTGTGTTGACCTGGATGCAGAAATCGCCAAA < 41bp 0.380177289148431 0.76949410397077 0.35313213 0.45147273 prediction 0.53898820794154 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158256901 chr4:158256905 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_105077 0 0 0 1 1 exosome 0.500231772902823 0.50023186001537 0 1.74225094129454e-07 hm5C_site_58222 DeepMRMD:0;iRNA_m5C:1.74225094129454e-07 58223 chr16 1815986 1815986 1 + C G rs200111591 1815985 + 1815965 1816005 41 CAGCGACAGCGACTACCCTCCCGGGGAGATGTTCCTGGACA CAGCGACAGCGACTACCCTCCGGGGGAGATGTTCCTGGACA < 41bp 0.455535500805861 0.769477238445016 0.9223206 0.9363693 prediction 0.538954476890031 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1815985 chr16:1815986 synonymous SNV . 0 22 hm5C_associated_SNPs_105078 0 0 0 0 1 chromatin 0.500233229437106 0.500231643921244 0.0280973999999998 0 hm5C_site_58223 DeepMRMD:0.0280973999999998;iRNA_m5C:0 58224 chrX 129545445 129545445 1 + C A UCEC 129545441 + 129545421 129545461 41 GGCTGTGGGGCTCGTACCCCCTCACCAAGTTTGTCTGAGAG GGCTGTGGGGCTCGTACCCCCTCAACAAGTTTGTCTGAGAG < 41bp 0.338537272474134 0.769475231243443 0.03999147 0.35688764 prediction 0.538950462486886 Functional Gain - RBMX2 ENSG00000134597 CDS Human protein_coding chrX:129545441 chrX:129545445 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_105079 0 0 0 0 1 exosome 0.500231642248582 0.500231643921092 0 3.34502048282559e-09 hm5C_site_58224 DeepMRMD:0;iRNA_m5C:3.34502048282559e-09 58225 chr7 158698750 158698750 1 + T C LIHC 158698748 + 158698728 158698768 41 ATTTTGCCTCAGCTTCACACCGTCAAAAGAGTCGGACTCAG ATTTTGCCTCAGCTTCACACCGCCAAAAGAGTCGGACTCAG < 41bp 0.484976992792888 0.769461188566935 0.057481438 0.55957544 prediction 0.538922377133869 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158698748 chr7:158698750 synonymous SNV . 0 23 hm5C_associated_SNPs_105080 0 0 0 0 2 Nucleus 0.500231643889334 0.500231643904419 0.11915088 3.01705327387936e-11 hm5C_site_58225 DeepMRMD:0.11915088;iRNA_m5C:3.01705327387936e-11 58226 chr16 68279354 68279354 1 + C G OV 68279353 + 68279333 68279373 41 GGCCTCCACCTCCGCCCCTACCGTGTGGGGCTGCTCCCGGA GGCCTCCACCTCCGCCCCTACGGTGTGGGGCTGCTCCCGGA < 41bp 0.46416962354409 0.769459817831786 0.4312517 0.7884613 prediction 0.538919635663571 Functional Gain - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68279353 chr16:68279354 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_105081 0 0 1 0 0 Ribosome 0.500231634278899 0.500231643347882 0.5769226 1.81379664621062e-08 hm5C_site_58226 DeepMRMD:0.5769226;iRNA_m5C:1.81379664621062e-08 58227 chr15 75045584 75045584 1 + T C LUAD 75045582 + 75045562 75045602 41 CCCAAGAAATGCTGTGTCTTCGTAAACCAGTGGCAGGTCAA CCCAAGAAATGCTGTGTCTTCGCAAACCAGTGGCAGGTCAA < 41bp 0.506428664188127 0.77588574288904 0.09285396 0.119125575 prediction 0.538914157401826 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75045582 chr15:75045584 nonsynonymous SNV 0.664 1 23 hm5C_associated_SNPs_105082 0 0 0 0 2 Nucleus 0.500234013095289 0.500434144395952 0 0.000400262601325085 hm5C_site_58227 DeepMRMD:0;iRNA_m5C:0.000400262601325085 58228 chr19 37975569 37975569 1 + C G OV 37975568 + 37975548 37975588 41 AGATCATCCATTGCTCAACACCAGAGAGTTCATACAGGAGA AGATCATCCATTGCTCAACACGAGAGAGTTCATACAGGAGA < 41bp 0.453097109150824 0.769453943887257 0.03202173 0.15634915 prediction 0.538907887774514 Functional Gain - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37975568 chr19:37975569 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_105083 0 0 0 0 0 exosome 0.500924714146601 0.500235468885879 0 0 hm5C_site_58228 DeepMRMD:0;iRNA_m5C:0 58229 chr7 53103706 53103706 1 + T G HNSC 53103703 + 53103683 53103723 41 GCTCTGGGGCGAGACCTCTCCTGTGCCTGGGAGGGTTGCAT GCTCTGGGGCGAGACCTCTCCTGGGCCTGGGAGGGTTGCAT < 41bp 0.632339470511987 0.901789616590474 0.75738883 0.9314641 prediction 0.538900292156972 Functional Gain - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103703 chr7:53103706 nonsynonymous SNV 0.000 2 24 hm5C_associated_SNPs_105084 0 0 0 0 0 unknown 0.500231643920667 0.500231643843812 0.34815054 0 hm5C_site_58229 DeepMRMD:0.34815054;iRNA_m5C:0 58230 chr10 134219126 134219126 1 + C G rs374025458 134219125 + 134219105 134219145 41 GCCCTGTGCGGACGGCCCTGCCGGTGGGCTGGCGGACTTGT GCCCTGTGCGGACGGCCCTGCGGGTGGGCTGGCGGACTTGT < 41bp 0.464460747503693 0.769433654811496 0.7836239 0.89662457 prediction 0.538867309622992 Functional Gain - PWWP2B ENSG00000171813 CDS Human protein_coding chr10:134219125 chr10:134219126 synonymous SNV . 0 22 hm5C_associated_SNPs_105085 0 0 1 0 0 chromatin 0.500231644652089 0.50023164392102 0.22600134 0 hm5C_site_58230 DeepMRMD:0.22600134;iRNA_m5C:0 58231 chr11 65124320 65124320 1 + C A GBM 65124316 + 65124296 65124336 41 CGCCCTGCACGTGGCGTCTGCCGCCTGGGCCAAGGTGCCTC CGCCCTGCACGTGGCGTCTGCCGCATGGGCCAAGGTGCCTC < 41bp 0.36539908942966 0.76941304491431 0.15225846 0.19416222 prediction 0.53882608982862 Functional Gain - TIGD3 ENSG00000173825 CDS Human protein_coding chr11:65124316 chr11:65124320 synonymous SNV . 0 25 hm5C_associated_SNPs_105086 0 0 0 0 0 Endoplasmic reticulum 0.500231643915909 0.500230466511017 0 0 hm5C_site_58231 DeepMRMD:0;iRNA_m5C:0 58232 chr3 32932471 32932471 1 + C G LIHC 32932467 + 32932447 32932487 41 GCAGCTACGTGGGCATTGGGCTCCCGGGCCTGAGCTTCGGC GCAGCTACGTGGGCATTGGGCTCCGGGGCCTGAGCTTCGGC < 41bp 0.517362906262543 0.786766136395176 0.24838462 0.3857381 prediction 0.538806460265266 Functional Gain - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32932467 chr3:32932471 nonsynonymous SNV 0.923 3 25 hm5C_associated_SNPs_105087 0 0 1 0 0 cytosol 0.500231559727556 0.50023157931826 0 3.91814067857155e-08 hm5C_site_58232 DeepMRMD:0;iRNA_m5C:3.91814067857155e-08 58233 chr3 41280772 41280772 1 + T C SKCM 41280770 + 41280750 41280790 41 GATCTGGGGCATGCCCAGGACCTCATGGATGGGCTGCCTCC GATCTGGGGCATGCCCAGGACCCCATGGATGGGCTGCCTCC < 41bp 0.516982829701158 0.786378641746836 0.2465558 0.26369417 prediction 0.538791624091357 Functional Gain - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41280770 chr3:41280772 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105088 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921228 0 2.71338507218388e-13 hm5C_site_58233 DeepMRMD:0;iRNA_m5C:2.71338507218388e-13 58234 chr1 55151962 55151962 1 + T G SARC 55151960 + 55151940 55151980 41 GGCCTGTGCGAGCTCCTGTCCGTCAACAGCTGCATGGGCCG GGCCTGTGCGAGCTCCTGTCCGGCAACAGCTGCATGGGCCG < 41bp 0.600980560166066 0.870359890443217 0.08318707 0.5617818 prediction 0.538758660554303 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55151960 chr1:55151962 nonsynonymous SNV 0.880 2 23 hm5C_associated_SNPs_105089 0 0 0 0 0 exosome 0.500231643932473 0.500231643921092 0.1235636 0 hm5C_site_58234 DeepMRMD:0.1235636;iRNA_m5C:0 58235 chr1 1334993 1334993 1 + C A rs185071634 1334989 + 1334969 1335009 41 GAGCGCCTGCCTGTGCGCCCCGAGCGGGGCTGGGACTCTTC GAGCGCCTGCCTGTGCGCCCCGAGAGGGGCTGGGACTCTTC < 41bp 0.620408114414684 0.889785001738163 0.2534482 0.87293684 prediction 0.538753774646957 Functional Gain - LOC148413 ENSG00000224870 CDS Human processed_transcript chr1:1334989 chr1:1334993 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105090 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.74587368 0 hm5C_site_58235 DeepMRMD:0.74587368;iRNA_m5C:0 Red blood cell count 58236 chr2 228190002 228190002 1 + C G rs7562498 228190001 + 228189981 228190021 41 CGCGCCTTTCGCGCTTCTGCCCTGGCCCTCTGCGGGCCGCT CGCGCCTTTCGCGCTTCTGCCGTGGCCCTCTGCGGGCCGCT < 41bp 0.519778759843011 0.789153451187382 0.3525221 0.848639 prediction 0.538749382688741 Functional Gain - MFF ENSG00000168958 UTR5 Human protein_coding chr2:228190001 chr2:228190002 . . 0 22 hm5C_associated_SNPs_105091 0 0 1 0 0 Cytosol 0.50023164392104 0.500231642113292 0.697278 0 hm5C_site_58236 DeepMRMD:0.697278;iRNA_m5C:0 58237 chr11 60700950 60700950 1 + C G rs616270 60700946 + 60700926 60700966 41 GACTACAGGCATGAGCCACCCACCCGGCCCAGCCTCACACC GACTACAGGCATGAGCCACCCACCGGGCCCAGCCTCACACC < 41bp 0.506171845997511 0.775538330330529 0.04475516 0.089131534 prediction 0.538732968666036 Functional Gain - TMEM132A ENSG00000006118 intronic Human protein_coding chr11:60700946 chr11:60700950 . . 0 25 hm5C_associated_SNPs_105092 0 0 0 0 0 Ribosome 0.500231643920085 0.500231643921289 0 2.40896191883166e-12 hm5C_site_58237 DeepMRMD:0;iRNA_m5C:2.40896191883166e-12 58238 chr3 12526197 12526197 1 + C G rs540294443 12526196 + 12526176 12526216 41 AGCCAGGCTTCCGAGTGCGCCCGGTCACTGACTCCTCCGCG AGCCAGGCTTCCGAGTGCGCCGGGTCACTGACTCCTCCGCG < 41bp 0.514852854957209 0.784211190474011 0.5217602 0.9092989 prediction 0.538716671033605 Functional Gain - TSEN2 ENSG00000154743 UTR5 Human protein_coding chr3:12526196 chr3:12526197 . . 0 22 hm5C_associated_SNPs_105093 0 0 0 0 0 Nucleus 0.500231642437477 0.500231643935007 0.7750774 2.9950584234939e-09 hm5C_site_58238 DeepMRMD:0.7750774;iRNA_m5C:2.9950584234939e-09 58239 chr11 74876920 74876920 1 + T A LUAD 74876916 + 74876896 74876936 41 TGATTGGCTATGGGGCTATCCTTGTGGCCCTGGCGGGCCTG TGATTGGCTATGGGGCTATCCTTGAGGCCCTGGCGGGCCTG < 41bp 0.45311307558982 0.769354927676845 0.19227052 0.46153763 prediction 0.53870985535369 Functional Gain - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74876916 chr11:74876920 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105094 0 0 0 0 2 cytosol 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_58239 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 58240 chr18 61449703 61449703 1 + C A LUAD 61449699 + 61449679 61449719 41 AATGGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGC AATGGAAATGTGTTCTTTTCCTCTATGAGCCTCTTCGCTGC < 41bp 0.651252489101144 0.920606726932525 0.26498395 0.94458777 prediction 0.538708475662762 Functional Gain - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61449699 chr18:61449703 nonsynonymous SNV 0.975 5 25 hm5C_associated_SNPs_105095 0 0 0 0 1 exosome 0.500231810247216 0.500229449887668 0.88917554 0 hm5C_site_58240 DeepMRMD:0.88917554;iRNA_m5C:0 58241 chr14 20404355 20404355 1 + T G LUSC 20404353 + 20404333 20404373 41 GGTCCCAATGAGGTGGATAGCTTCTTTTGTGACCTTCCCTT GGTCCCAATGAGGTGGATAGCTGCTTTTGTGACCTTCCCTT < 41bp 0.592344997627015 0.861698686771336 0.10927275 0.16444987 prediction 0.538707378288643 Functional Gain - OR4K1 ENSG00000155249 CDS Human protein_coding chr14:20404353 chr14:20404355 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_105096 0 0 0 0 0 unknown 0.500231643951187 0.500231647986092 0 8.06980904322074e-09 hm5C_site_58241 DeepMRMD:0;iRNA_m5C:8.06980904322074e-09 58242 chr12 3394331 3394331 1 + C G rs557677731 3394330 + 3394310 3394350 41 AGCCGCCTCCGCAGGAACCCCCAAAGTGCAGATTCCGGAGC AGCCGCCTCCGCAGGAACCCCGAAAGTGCAGATTCCGGAGC < 41bp 0.491002848669038 0.769350786563625 0.2611167 0.2083067 prediction 0.538701573127251 Functional Gain - TSPAN9 ENSG00000011105 UTR3 Human protein_coding chr12:3394330 chr12:3394331 . . 0 22 hm5C_associated_SNPs_105097 0 0 1 0 0 Nucleus 0.500231643921091 0.500231643921092 0 3.33066907387547e-15 hm5C_site_58242 DeepMRMD:0;iRNA_m5C:3.33066907387547e-15 58243 chr16 71675230 71675230 1 + C A rs12927320 71675226 + 71675206 71675246 41 AATCGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACT AATCGCCGGGCATGGTGGCTCACGACTGTAATCCCAGCACT < 41bp 0.398979662704088 0.769349892343563 0.082187414 0.17020667 prediction 0.538699784687126 Functional Gain - MARVELD3 ENSG00000140832 UTR3 Human protein_coding chr16:71675226 chr16:71675230 . . 0 25 hm5C_associated_SNPs_105098 0 0 0 7 0 Ribosome 0.500231647649022 0.500231643921501 0 0 hm5C_site_58243 DeepMRMD:0;iRNA_m5C:0 58244 chr9 116038032 116038032 1 + C A GBM 116038028 + 116038008 116038048 41 GGCTCCAGAGCCCAGCATGGCTTCCTCGCGAGCCTCTTCCA GGCTCCAGAGCCCAGCATGGCTTCATCGCGAGCCTCTTCCA < 41bp 0.371326608324059 0.76934794484021 0.11430004 0.09161252 prediction 0.538695889680419 Functional Gain - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116038028 chr9:116038032 synonymous SNV . 0 25 hm5C_associated_SNPs_105099 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58244 DeepMRMD:0;iRNA_m5C:0 58245 chrX 152686420 152686420 1 + C A BLCA 152686416 + 152686396 152686436 41 GCTGTTTCGCCGCAGCTTCGCGCTCCTGGAGCACCAGCGCA GCTGTTTCGCCGCAGCTTCGCGCTACTGGAGCACCAGCGCA < 41bp 0.386006301310196 0.769338779092803 0.12860104 0.2631195 prediction 0.538677558185606 Functional Gain - ZFP92 ENSG00000189420 CDS Human protein_coding chrX:152686416 chrX:152686420 synonymous SNV . 0 25 hm5C_associated_SNPs_105100 0 0 0 0 0 nucleolus 0.500231643900919 0.500231643805254 0 0 hm5C_site_58245 DeepMRMD:0;iRNA_m5C:0 58246 chr3 101311503 101311503 1 + T C UCEC 101311501 + 101311481 101311521 41 ACATCAGCTGGACCAAACTCCTTCAATAAAGGAAAGCATGG ACATCAGCTGGACCAAACTCCTCCAATAAAGGAAAGCATGG < 41bp 0.500651044190775 0.769986741563674 0.28178722 0.96668327 prediction 0.538671394745799 Functional Gain - PCNP ENSG00000081154 CDS Human protein_coding chr3:101311501 chr3:101311503 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_105101 0 0 1 0 1 chromatin 0.50023523897289 0.500231644609733 0.93336654 0 hm5C_site_58246 DeepMRMD:0.93336654;iRNA_m5C:0 58247 chr19 11660228 11660228 1 + C G LUSC 11660224 + 11660204 11660244 41 GACCCCAAGCTGGGCACAGACCAGCCTCTGGACCAGGCGAC GACCCCAAGCTGGGCACAGACCAGGCTCTGGACCAGGCGAC < 41bp 0.529904069974867 0.79923025882775 0.35707998 0.6109937 prediction 0.538652377705765 Functional Gain - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11660224 chr19:11660228 nonsynonymous SNV 0.967 2 25 hm5C_associated_SNPs_105102 0 0 0 0 2 Cytosol 0.500231643921129 0.500231647920959 0.2219874 7.99965893527599e-09 hm5C_site_58247 DeepMRMD:0.2219874;iRNA_m5C:7.99965893527599e-09 58248 chr1 1396160 1396160 1 + C G BLCA 1396159 + 1396139 1396179 41 GATCCTGGCCAGCTGCCACCCCGAGCAGTTCGACTGGGCCA GATCCTGGCCAGCTGCCACCCGGAGCAGTTCGACTGGGCCA < 41bp 0.574942865471074 0.844252755145339 0.35018373 0.90294194 prediction 0.53861977934853 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1396159 chr1:1396160 synonymous SNV . 0 22 hm5C_associated_SNPs_105103 0 0 0 0 1 Nucleus 0.500231636506194 0.50023164366106 0.80588388 1.43097309557305e-08 hm5C_site_58248 DeepMRMD:0.80588388;iRNA_m5C:1.43097309557305e-08 58249 chr11 94731384 94731384 1 + T C LIHC 94731382 + 94731362 94731402 41 CCCTATGGCTACCATGCTGGCTTCAACCATGGTTTCAACTG CCCTATGGCTACCATGCTGGCTCCAACCATGGTTTCAACTG < 41bp 0.522952161871179 0.792247285622813 0.025250793 0.48116693 prediction 0.538590247503269 Functional Gain - KDM4D ENSG00000186280 CDS Human protein_coding chr11:94731382 chr11:94731384 nonsynonymous SNV 0.831 3 23 hm5C_associated_SNPs_105104 0 0 0 0 0 chromatin 0.500231643921089 0.500230756538235 0 0 hm5C_site_58249 DeepMRMD:0;iRNA_m5C:0 58250 chr5 1217032 1217032 1 + C G LUSC 1217028 + 1217008 1217048 41 CCTACGCGCAGCTGGTGTTCCAGACCTGCGACATCAACGCC CCTACGCGCAGCTGGTGTTCCAGAGCTGCGACATCAACGCC < 41bp 0.470249193762844 0.769286940002704 0.4141894 0.7790834 prediction 0.538573880005408 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1217028 chr5:1217032 nonsynonymous SNV 0.939 0 25 hm5C_associated_SNPs_105105 0 0 0 0 1 cytosol 0.500231624063317 0.500231648221554 0.5581668 4.83164739328856e-08 hm5C_site_58250 DeepMRMD:0.5581668;iRNA_m5C:4.83164739328856e-08 58251 chr11 56949617 56949617 1 + C A UCEC 56949613 + 56949593 56949633 41 GATGCCGGCACCAGCTGCCCCGTCCTTTGCACATGCCGTAA GATGCCGGCACCAGCTGCCCCGTCATTTGCACATGCCGTAA < 41bp 0.358598869900752 0.769275069544662 0.1810863 0.29862064 prediction 0.538550139089325 Functional Gain - LRRC55 ENSG00000183908 CDS Human protein_coding chr11:56949613 chr11:56949617 nonsynonymous SNV 0.975 2 25 hm5C_associated_SNPs_105106 0 0 0 0 0 exosome 0.500231643921092 0.50023164392091 0 0 hm5C_site_58251 DeepMRMD:0;iRNA_m5C:0 58252 chr5 148207582 148207582 1 + C A BLCA 148207578 + 148207558 148207598 41 GGGCCATCAAGGTACTGTGCCTAGCGATAACATTGATTCAC GGGCCATCAAGGTACTGTGCCTAGAGATAACATTGATTCAC < 41bp 0.380039051288797 0.769274208219128 0.09859824 0.22021452 prediction 0.538548416438257 Functional Gain - ADRB2 ENSG00000169252 CDS Human protein_coding chr5:148207578 chr5:148207582 nonsynonymous SNV 0.027 0 25 hm5C_associated_SNPs_105107 0 0 0 0 0 Cytoplasm 0.500231643916017 0.50023161938164 0 0 hm5C_site_58252 DeepMRMD:0;iRNA_m5C:0 58253 chr14 105965446 105965446 1 + T A rs185093200 105965442 + 105965422 105965462 41 GGGGCTGGGCTGACTCTGGCCGGATCCCAGGCCTGTGGCTA GGGGCTGGGCTGACTCTGGCCGGAACCCAGGCCTGTGGCTA < 41bp 0.512935102081371 0.782205278284877 0.8744683 0.83476716 prediction 0.538540352407011 Functional Gain - C14orf80 ENSG00000185347 UTR3 Human protein_coding chr14:105965442 chr14:105965446 . . 0 25 hm5C_associated_SNPs_105108 0 0 1 0 0 Ribosome 0.500231644589152 0.500231643955575 0 0 hm5C_site_58253 DeepMRMD:0;iRNA_m5C:0 58254 chrX 37027118 37027118 1 + C G LUAD 37027114 + 37027094 37027134 41 AGACTCCGGTGTCCAGTCTCCGCCCGGAGCCTCCAGAGACT AGACTCCGGTGTCCAGTCTCCGCCGGGAGCCTCCAGAGACT < 41bp 0.533657447386949 0.80291462244829 0.06370339 0.11154264 prediction 0.538514350122681 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37027114 chrX:37027118 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_105109 0 0 0 0 0 unknown 0.500231643921074 0.500231643919807 0 0 hm5C_site_58254 DeepMRMD:0;iRNA_m5C:0 58255 chr11 4903549 4903549 1 + C G rs201593644 4903545 + 4903525 4903565 41 GAACTATGCTACTATCCTCACAGACAGGATGGTCCTGGTGA GAACTATGCTACTATCCTCACAGAGAGGATGGTCCTGGTGA < 41bp 0.491024362802977 0.769241069382719 0.03251174 0.1841617 prediction 0.538482138765437 Functional Gain - OR51T1 ENSG00000176900 CDS Human protein_coding chr11:4903545 chr11:4903549 nonsynonymous SNV 0.009 1 25 hm5C_associated_SNPs_105110 0 0 0 0 0 unknown 0.500277125707791 0.500236937751981 0 0 hm5C_site_58255 DeepMRMD:0;iRNA_m5C:0 58256 chr13 114150029 114150029 1 + C G rs200574898 114150025 + 114150005 114150045 41 CGCGGGCGAGGGGTGGCTGCCATGCAGAGCCGGCAGTGGGT CGCGGGCGAGGGGTGGCTGCCATGGAGAGCCGGCAGTGGGT < 41bp 0.52835415057933 0.797583259917379 0.07507011 0.14667931 prediction 0.538458218676098 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114150025 chr13:114150029 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_105111 0 0 1 0 0 Ribosome 0.500231643921094 0.500231643920473 0 0 hm5C_site_58256 DeepMRMD:0;iRNA_m5C:0 58257 chr9 115600856 115600856 1 + T C UCEC 115600854 + 115600834 115600874 41 GAGGGTGAGCTGGCTGAACCCCTGGAGGGTGTGTCAGCTTG GAGGGTGAGCTGGCTGAACCCCCGGAGGGTGTGTCAGCTTG < 41bp 0.518295181354514 0.787523830174332 0.29890355 0.34615773 prediction 0.538457297639637 Functional Gain - SNX30 ENSG00000148158 CDS Human protein_coding chr9:115600854 chr9:115600856 nonsynonymous SNV 0.994 4 23 hm5C_associated_SNPs_105112 0 0 1 0 1 Ribosome 0.500231643920358 0.500231640444829 0 0 hm5C_site_58257 DeepMRMD:0;iRNA_m5C:0 58258 chr8 145101585 145101585 1 + C A rs201925917 145101581 + 145101561 145101601 41 GAGAAGCTGTGCCAGAGGCTCACACAGCGCTATGTGAGCGT GAGAAGCTGTGCCAGAGGCTCACAAAGCGCTATGTGAGCGT < 41bp 0.36249355258506 0.769211143806833 0.028908253 0.071837455 prediction 0.538422287613666 Functional Gain - SPATC1 ENSG00000186583 CDS Human protein_coding chr8:145101581 chr8:145101585 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_105113 0 0 0 1 1 chromatin 0.500231630493226 0.500231644691835 0 2.83972179104808e-08 hm5C_site_58258 DeepMRMD:0;iRNA_m5C:2.83972179104808e-08 58259 chr7 102584809 102584809 1 + C A UCEC 102584805 + 102584785 102584825 41 AGATGTGACTACAACATTCACTACCTCTACTACTGGTTAAA AGATGTGACTACAACATTCACTACATCTACTACTGGTTAAA < 41bp 0.354342045355329 0.769207093808925 0.032775313 0.18141317 prediction 0.53841418761785 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102584805 chr7:102584809 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105114 0 0 1 14 0 Cytosol 0.500231643921094 0.500244575678471 0 2.58635147551978e-05 hm5C_site_58259 DeepMRMD:0;iRNA_m5C:2.58635147551978e-05 58260 chr2 133402872 133402872 1 + G T BLCA 133402876 - 133402856 133402896 41 CACAGCACCTGCACGAACACCCGCCGAAACTGCTGCGAGGA CACAGCACCTGCACGAACACCCGCAGAAACTGCTGCGAGGA < 41bp 0.377638654097407 0.76920541637736 0.2658636 0.40956137 prediction 0.538410832754719 Functional Gain - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133402876 chr2:133402872 nonsynonymous SNV 0.978 4 25 hm5C_associated_SNPs_105115 0 0 0 0 0 nucleus 0.500231643483936 0.500265125925868 0 6.69648838642622e-05 hm5C_site_58260 DeepMRMD:0;iRNA_m5C:6.69648838642622e-05 58261 chr5 33937538 33937538 1 + C G LUSC 33937537 + 33937517 33937557 41 GGCCGCGCTGGCCTCGCTGCCCAGTGCCATTTTCTCCACCA GGCCGCGCTGGCCTCGCTGCCGAGTGCCATTTTCTCCACCA < 41bp 0.457587662766913 0.769199904777164 0.15025559 0.81456614 prediction 0.538399809554329 Functional Gain - RXFP3 ENSG00000182631 CDS Human protein_coding chr5:33937537 chr5:33937538 synonymous SNV . 0 22 hm5C_associated_SNPs_105116 0 0 0 0 0 unknown 0.50023164392099 0.500231643921077 0.62913228 1.73416836446449e-13 hm5C_site_58261 DeepMRMD:0.62913228;iRNA_m5C:1.73416836446449e-13 58262 chr3 31674465 31674465 1 + T C HNSC 31674463 + 31674443 31674483 41 CCCCAGGTTTTGACCGAACACGTAATGCTGAGATTGGAAAT CCCCAGGTTTTGACCGAACACGCAATGCTGAGATTGGAAAT < 41bp 0.53297730191378 0.802163244172993 0.16600141 0.13011256 prediction 0.538371884518426 Functional Gain - STT3B ENSG00000163527 CDS Human protein_coding chr3:31674463 chr3:31674465 synonymous SNV . 0 23 hm5C_associated_SNPs_105117 0 0 1 0 1 Nucleus 0.500231265004973 0.500231788430318 0 1.04685069080013e-06 hm5C_site_58262 DeepMRMD:0;iRNA_m5C:1.04685069080013e-06 58263 chr6 41900375 41900375 1 + C G rs149587548 41900374 + 41900354 41900394 41 GCCCCATCCACAGCTATCGCCCGAAATCAGGCGTGAGCTTC GCCCCATCCACAGCTATCGCCGGAAATCAGGCGTGAGCTTC < 41bp 0.463671052271695 0.769168928526734 0.37600985 0.835091 prediction 0.538337857053468 Functional Gain - BYSL ENSG00000112578 CDS Human protein_coding chr6:41900374 chr6:41900375 synonymous SNV . 0 22 hm5C_associated_SNPs_105118 0 0 1 0 0 Ribosome 0.500231616522925 0.500231643921096 0.670182 5.47963412422803e-08 hm5C_site_58263 DeepMRMD:0.670182;iRNA_m5C:5.47963412422803e-08 58264 chr21 44153531 44153531 1 + T G UCEC 44153529 + 44153509 44153549 41 TTGGCTGTCCTAGAGAAACGCGTGGAATGTGAGTGACGTTT TTGGCTGTCCTAGAGAAACGCGGGGAATGTGAGTGACGTTT < 41bp 0.485826250785158 0.769162164305123 0.35569406 0.891266 prediction 0.538324328610245 Functional Gain - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44153529 chr21:44153531 nonsynonymous SNV 0.896 3 23 hm5C_associated_SNPs_105119 0 0 0 0 2 Nucleus 0.500231643921105 0.500231643923434 0.782532 4.65871785593208e-12 hm5C_site_58264 DeepMRMD:0.782532;iRNA_m5C:4.65871785593208e-12 58265 chr5 131409549 131409549 1 + T G LGG 131409546 + 131409526 131409566 41 CAGAGCCTGCTGCTCTTGGGCACTGTGGCCTGCAGCATCTC CAGAGCCTGCTGCTCTTGGGCACGGTGGCCTGCAGCATCTC < 41bp 0.631446799222132 0.900585609639799 0.16795969 0.2938127 prediction 0.538277620835332 Functional Gain - CSF2 ENSG00000164400 CDS Human protein_coding chr5:131409546 chr5:131409549 synonymous SNV . 0 24 hm5C_associated_SNPs_105120 0 0 0 0 0 exosome 0.500234025566856 0.500231644369306 0 0 hm5C_site_58265 DeepMRMD:0;iRNA_m5C:0 58266 chr16 20838467 20838467 1 + T C rs141772223 20838465 + 20838445 20838485 41 AGTTAAAAGCACTGCTTCCTCCTGATGCTGTGTTAGTGGGC AGTTAAAAGCACTGCTTCCTCCCGATGCTGTGTTAGTGGGC < 41bp 0.518512077724496 0.787645496198339 0.11234513 0.093972534 prediction 0.538266836947688 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20838465 chr16:20838467 synonymous SNV . 0 23 hm5C_associated_SNPs_105121 0 0 1 0 2 unknown 0.500231645766268 0.500185170209757 0 0 hm5C_site_58266 DeepMRMD:0;iRNA_m5C:0 58267 chr15 89386836 89386836 1 + C G LUSC 89386832 + 89386812 89386852 41 CTACGTGCATGCCAACCAGACGGGCTACCCCGACCCCTCAT CTACGTGCATGCCAACCAGACGGGGTACCCCGACCCCTCAT < 41bp 0.539784457780367 0.808909640938326 0.8726312 0.92077637 prediction 0.538250366315918 Functional Gain - ACAN ENSG00000157766 CDS Human protein_coding chr15:89386832 chr15:89386836 synonymous SNV . 0 25 hm5C_associated_SNPs_105122 0 0 0 0 1 exosome 0.50023164314433 0.500231643378167 0.0962903399999999 4.6767434369599e-10 hm5C_site_58267 DeepMRMD:0.0962903399999999;iRNA_m5C:4.6767434369599e-10 58268 chr1 158435408 158435408 1 + C G ACC 158435404 + 158435384 158435424 41 GTTCGTCGTCCTCGGCTTCTCATCCCTGGCCAGGCTGCAGC GTTCGTCGTCCTCGGCTTCTCATCGCTGGCCAGGCTGCAGC < 41bp 0.496217561477067 0.769123462198878 0.1681171 0.26987708 prediction 0.538246924397757 Functional Gain - OR10K1 ENSG00000173285 CDS Human protein_coding chr1:158435404 chr1:158435408 synonymous SNV . 0 25 hm5C_associated_SNPs_105123 0 0 0 0 0 unknown 0.500231643921101 0.500231643927529 0 1.2857270803579e-11 hm5C_site_58268 DeepMRMD:0;iRNA_m5C:1.2857270803579e-11 58269 chr11 1000480 1000480 1 + C A rs111435435 1000476 + 1000456 1000496 41 CTGCTGGGTCTCGGGGCTGCCCCCCCTGCCCCCGCGGGCCC CTGCTGGGTCTCGGGGCTGCCCCCACTGCCCCCGCGGGCCC < 41bp 0.362815060588716 0.769123287073104 0.2784389 0.61680984 prediction 0.538246574146207 Functional Gain - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:1000476 chr11:1000480 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105124 0 0 0 0 1 Nucleus 0.500231643921091 0.500231643921143 0.23361968 1.04805053524615e-13 hm5C_site_58269 DeepMRMD:0.23361968;iRNA_m5C:1.04805053524615e-13 58270 chr12 6954905 6954905 1 + A T ACC 6954909 - 6954889 6954929 41 GTTGAAGTCGTCGTAGCCAGCGAATAGTAGGCGGCCACTGA GTTGAAGTCGTCGTAGCCAGCGAAAAGTAGGCGGCCACTGA < 41bp 0.561265353067303 0.830383141143673 0.468519 0.27718443 prediction 0.53823557615274 Functional Gain - GNB3 ENSG00000111664 CDS Human protein_coding chr12:6954909 chr12:6954905 synonymous SNV . 0 25 hm5C_associated_SNPs_105125 0 0 1 0 0 nucleolus 0.500231643612793 0.500231643921089 0 6.16590112301196e-10 hm5C_site_58270 DeepMRMD:0;iRNA_m5C:6.16590112301196e-10 58271 chr6 150292646 150292646 1 + C G rs2181918 150292642 + 150292622 150292662 41 GCAAGCCCAGAGGCCCCCAGCAGACGATGAGGACATTGTCG GCAAGCCCAGAGGCCCCCAGCAGAGGATGAGGACATTGTCG < 41bp 0.539919985419098 0.80903683372288 0.5214359 0.8958378 prediction 0.538233696607564 Functional Gain - ULBP1 ENSG00000111981 UTR3 Human protein_coding chr6:150292642 chr6:150292646 . . 0 25 hm5C_associated_SNPs_105126 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921076 0.7488038 0 hm5C_site_58271 DeepMRMD:0.7488038;iRNA_m5C:0 58272 chr7 128509460 128509460 1 + C G rs115979874 128509459 + 128509439 128509479 41 CGCTAAGCTCGGCCCCTGCCCCGCGCAGGCTCCTTGTGGCC CGCTAAGCTCGGCCCCTGCCCGGCGCAGGCTCCTTGTGGCC < 41bp 0.556811783573595 0.825928387864681 0.4704322 0.8891885 prediction 0.538233208582171 Functional Gain - LOC100130705 ENSG00000135253 ncRNA_intronic Human protein_coding chr7:128509459 chr7:128509460 . . 0 22 hm5C_associated_SNPs_105127 0 0 1 0 0 unknown 0.500231643921053 0.500231643920831 0.778377 0 hm5C_site_58272 DeepMRMD:0.778377;iRNA_m5C:0 58273 chr9 125281954 125281954 1 + T A LUAD 125281950 + 125281930 125281970 41 GACAACACCATCCCCCATTTCTTCTGTGATCTTGTTGCCCT GACAACACCATCCCCCATTTCTTCAGTGATCTTGTTGCCCT < 41bp 0.44530705043957 0.769115412078531 0.11345774 0.103969604 prediction 0.538230824157061 Functional Gain - OR1J4 ENSG00000239590 CDS Human protein_coding chr9:125281950 chr9:125281954 nonsynonymous SNV 0.874 3 25 hm5C_associated_SNPs_105128 0 0 0 0 0 exosome 0.500231643920581 0.500231643920201 0 0 hm5C_site_58273 DeepMRMD:0;iRNA_m5C:0 58274 chr1 248570175 248570175 1 + C G LUAD 248570174 + 248570154 248570194 41 GCATTTGCCACTTGCTCATCCCACATGACTGTGGTGTCCTT GCATTTGCCACTTGCTCATCCGACATGACTGTGGTGTCCTT < 41bp 0.550230828732548 0.819343624295886 0.057380646 0.10168791 prediction 0.538225591126677 Functional Gain - OR2T1 ENSG00000175143 CDS Human protein_coding chr1:248570174 chr1:248570175 nonsynonymous SNV 0.005 1 22 hm5C_associated_SNPs_105129 0 0 0 0 0 unknown 0.500189642340916 0.500230238492872 0 8.11923039116813e-05 hm5C_site_58274 DeepMRMD:0;iRNA_m5C:8.11923039116813e-05 58275 chr11 76835517 76835517 1 + C G rs185212384 76835516 + 76835496 76835536 41 TAAACGACACCTTTGAGGCCCCAGGTGAAGCGGGGCCCTAC TAAACGACACCTTTGAGGCCCGAGGTGAAGCGGGGCCCTAC < 41bp 0.46480915887772 0.769111769776689 0.9068699 0.91636217 prediction 0.538223539553379 Functional Gain - CAPN5 ENSG00000149260 UTR3 Human protein_coding chr11:76835516 chr11:76835517 . . 0 22 hm5C_associated_SNPs_105130 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921142 0.0189845399999999 9.83657599817889e-14 hm5C_site_58275 DeepMRMD:0.0189845399999999;iRNA_m5C:9.83657599817889e-14 58276 chr21 42694953 42694953 1 + C A rs149569625 42694949 + 42694929 42694969 41 AGATGCACCCCTGTCCAGTGCTGCCTATAGCATCCGCAGCA AGATGCACCCCTGTCCAGTGCTGCATATAGCATCCGCAGCA < 41bp 0.361099551924526 0.769100839092676 0.11980766 0.08392027 prediction 0.538201678185352 Functional Gain - FAM3B ENSG00000183844 CDS Human protein_coding chr21:42694949 chr21:42694953 synonymous SNV . 0 25 hm5C_associated_SNPs_105131 0 0 1 0 1 Cytosol 0.500231643890499 0.500231655694001 0 2.36070052395121e-08 hm5C_site_58276 DeepMRMD:0;iRNA_m5C:2.36070052395121e-08 58277 chr1 154549742 154549742 1 + C A rs183661862 154549738 + 154549718 154549758 41 GGCCAGCAGATGGTGGGTTACAGACGGGTCAGCCTGCCAAG GGCCAGCAGATGGTGGGTTACAGAAGGGTCAGCCTGCCAAG < 41bp 0.449976605590101 0.769088053881215 0.17711574 0.41131046 prediction 0.538176107762431 Functional Gain - CHRNB2 ENSG00000160716 UTR3 Human protein_coding chr1:154549738 chr1:154549742 . . 0 25 hm5C_associated_SNPs_105132 0 0 0 0 0 nucleus 0.500231643920156 0.500231643897861 0 0 hm5C_site_58277 DeepMRMD:0;iRNA_m5C:0 58278 chr11 55418547 55418547 1 + C G LUAD 55418543 + 55418523 55418563 41 CCTGAGCAACCTGTTTAAGTCACCCATGTATTTCTTTCTCA CCTGAGCAACCTGTTTAAGTCACCGATGTATTTCTTTCTCA < 41bp 0.499270745245465 0.769086646217681 0.06527433 0.13091916 prediction 0.538173292435362 Functional Gain - OR4S2 ENSG00000174982 CDS Human protein_coding chr11:55418543 chr11:55418547 synonymous SNV . 0 25 hm5C_associated_SNPs_105133 0 0 0 0 0 unknown 0.499985976754323 0.500231564526709 0 0.000463129053418054 hm5C_site_58278 DeepMRMD:0;iRNA_m5C:0.000463129053418054 58279 chr10 5248320 5248320 1 + T C OV 5248318 + 5248298 5248338 41 TGCAGGCAGCTGGAGATGATCCTCAACAAGCCAGGACTCAA TGCAGGCAGCTGGAGATGATCCCCAACAAGCCAGGACTCAA < 41bp 0.48623379361045 0.769077828490374 0.027688622 0.030404747 prediction 0.538155656980748 Functional Gain - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5248318 chr10:5248320 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_105134 0 0 0 0 2 exosome 0.50023160882449 0.50023163921687 0 6.0784759670085e-08 hm5C_site_58279 DeepMRMD:0;iRNA_m5C:6.0784759670085e-08 58280 chr4 132650814 132650814 1 + C A rs150471002 132650810 + 132650790 132650830 41 CCTGGGGATCTTTCTGTGCCCCGGCGAGACCCTTTTCGCCT CCTGGGGATCTTTCTGTGCCCCGGAGAGACCCTTTTCGCCT < 41bp 0.448787371789081 0.76906356553737 0.67572486 0.8472109 prediction 0.538127131074741 Functional Gain - LINC02479;SNHG27 ENSG00000241392;ENSG00000252014 intergenic Human other chr4:132650810 chr4:132650814 . . 0 25 hm5C_associated_SNPs_105135 0 0 0 0 0 unknown 0.500231643199166 0.500231644127042 0.34297208 1.85575088629264e-09 hm5C_site_58280 DeepMRMD:0.34297208;iRNA_m5C:1.85575088629264e-09 58281 chr14 38679295 38679295 1 + T A HNSC 38679291 + 38679271 38679311 41 ACACATTTCTCATGGGCTTCCTGCTGCCCGTGGGGGCTATC ACACATTTCTCATGGGCTTCCTGCAGCCCGTGGGGGCTATC < 41bp 0.584048749876777 0.853093275865831 0.037318617 0.05228913 prediction 0.538089051978108 Functional Gain - SSTR1 ENSG00000139874 CDS Human protein_coding chr14:38679291 chr14:38679295 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_105136 0 0 0 0 0 nucleus 0.500231640400025 0.50023164390413 0 7.00821023436049e-09 hm5C_site_58281 DeepMRMD:0;iRNA_m5C:7.00821023436049e-09 58282 chr5 176307464 176307464 1 + C G rs115453693 176307463 + 176307443 176307483 41 ATCTCACACACACCCCCCTCCCGGGTCACGCAGACACCCCC ATCTCACACACACCCCCCTCCGGGGTCACGCAGACACCCCC < 41bp 0.542691738017675 0.811735880381055 0.86084795 0.9535996 prediction 0.53808828472676 Functional Gain - UNC5A ENSG00000113763 UTR3 Human protein_coding chr5:176307463 chr5:176307464 . . 0 22 hm5C_associated_SNPs_105137 0 0 1 0 0 exosome 0.500231643902374 0.500231643921092 0.1855033 3.743760856878e-11 hm5C_site_58282 DeepMRMD:0.1855033;iRNA_m5C:3.743760856878e-11 58283 chr17 78075384 78075384 1 + C G rs144639114 78075383 + 78075363 78075403 41 CTGCGCGCCCCCGGGCACGACCCCGGAGTCTCCGCGGGCGG CTGCGCGCCCCCGGGCACGACGCCGGAGTCTCCGCGGGCGG < 41bp 0.531820175243245 0.800859090541922 0.46434447 0.52669376 prediction 0.538077830597355 Functional Gain - GAA ENSG00000171298 UTR5 Human protein_coding chr17:78075383 chr17:78075384 . . 0 22 hm5C_associated_SNPs_105138 2 0 1 0 1 Endoplasmic reticulum 0.500231643920855 0.500222815426289 0.05338752 0 hm5C_site_58283 DeepMRMD:0.05338752;iRNA_m5C:0 Glycogen storage disease, type II Glycogen storage disease, type II 58284 chr19 55494355 55494355 1 + T G LUSC 55494353 + 55494333 55494373 41 CTCACCCGCACGGGGCTGTTCCTGCGTTTCCTCTGCAGCCG CTCACCCGCACGGGGCTGTTCCGGCGTTTCCTCTGCAGCCG < 41bp 0.405616604400233 0.769033224000953 0.15063706 0.9380466 prediction 0.538066448001907 Functional Gain - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55494353 chr19:55494355 nonsynonymous SNV 0.049 3 23 hm5C_associated_SNPs_105139 0 0 0 0 0 Cytosol 0.500231643957654 0.500231643966145 0.8760932 1.69821934292713e-11 hm5C_site_58284 DeepMRMD:0.8760932;iRNA_m5C:1.69821934292713e-11 58285 chr18 12431342 12431342 1 + C A rs12605427 12431338 + 12431318 12431358 41 GCAACAGGGAGCAGCCCCAGCCAGCCCCACCGCCGCCGTCT GCAACAGGGAGCAGCCCCAGCCAGACCCACCGCCGCCGTCT < 41bp 0.623866827895932 0.892898153407533 0.54132634 0.8157347 prediction 0.538062651023202 Functional Gain - PRELID3A ENSG00000141391 UTR3 Human protein_coding chr18:12431338 chr18:12431342 . . 0 25 hm5C_associated_SNPs_105140 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.54881672 0 hm5C_site_58285 DeepMRMD:0.54881672;iRNA_m5C:0 58286 chr7 141833944 141833944 1 + C G LUAD 141833943 + 141833923 141833963 41 ATCTTCACCCGGGACGCTACCCCCACCGAGGTGAGGTGGCT ATCTTCACCCGGGACGCTACCGCCACCGAGGTGAGGTGGCT < 41bp 0.565448351137145 0.834472597222121 0.0723764 0.59695446 prediction 0.538048492169953 Functional Gain - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141833943 chr7:141833944 nonsynonymous SNV 0.083 3 22 hm5C_associated_SNPs_105141 0 0 0 0 1 exosome 0.500231643921091 0.500231655875299 0.19390892 2.39084163577985e-08 hm5C_site_58286 DeepMRMD:0.19390892;iRNA_m5C:2.39084163577985e-08 58287 chr10 70661146 70661146 1 + T G UCEC 70661144 + 70661124 70661164 41 GGCGGCGGTGGCCAGTAATGCCTGGGAAACTCCTCTGGGGG GGCGGCGGTGGCCAGTAATGCCGGGGAAACTCCTCTGGGGG < 41bp 0.609224816754403 0.878242550447576 0.8563515 0.9373131 prediction 0.538035467386347 Functional Gain - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70661144 chr10:70661146 synonymous SNV . 0 23 hm5C_associated_SNPs_105142 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0.1619232 0 hm5C_site_58287 DeepMRMD:0.1619232;iRNA_m5C:0 58288 chr19 41523076 41523076 1 + T A rs28969414 41523072 + 41523052 41523092 41 ACTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGC ACTCTCCTGCCTCAGCCTCCCTAGAAGCTGGGATTACAGGC < 41bp 0.524274350336183 0.793280785153187 0.035122603 0.08329511 prediction 0.538012869634009 Functional Gain - CYP2B6 ENSG00000197408 UTR3 Human protein_coding chr19:41523072 chr19:41523076 . . 0 25 hm5C_associated_SNPs_105143 0 0 0 0 0 Nucleus 0.500231824292739 0.500231846536268 0 4.44870564830779e-08 hm5C_site_58288 DeepMRMD:0;iRNA_m5C:4.44870564830779e-08 58289 chr1 159931161 159931161 1 + C A rs113012919 159931157 + 159931137 159931177 41 GATCTGGAAAGCTGGGGACCCACACGGCAGAGCCATGGTAC GATCTGGAAAGCTGGGGACCCACAAGGCAGAGCCATGGTAC < 41bp 0.609182401963028 0.878186677257028 0.06239733 0.4244249 prediction 0.538008550588 Functional Gain - LINC01133 ENSG00000224259 ncRNA_exonic Human lincRNA chr1:159931157 chr1:159931161 . . 0 25 hm5C_associated_SNPs_105144 0 0 0 0 1 unknown 0.500231641811142 0.50022899689365 0 0 hm5C_site_58289 DeepMRMD:0;iRNA_m5C:0 58290 chr10 94109483 94109483 1 + T G KIRC 94109481 + 94109461 94109501 41 AGGCCAATCCTTTAGCAGATCATGTCTCTGCTACTCGAATC AGGCCAATCCTTTAGCAGATCAGGTCTCTGCTACTCGAATC < 41bp 0.430609357426901 0.769000116561175 0.081358254 0.25702757 prediction 0.53800023312235 Functional Gain - MARCH5 ENSG00000198060 CDS Human protein_coding chr10:94109481 chr10:94109483 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_105145 0 0 1 0 1 Ribosome 0.500231643921092 0.500231689956101 0 9.20700169437794e-08 hm5C_site_58290 DeepMRMD:0;iRNA_m5C:9.20700169437794e-08 58291 chr9 84533308 84533308 1 + T G UCEC 84533306 + 84533286 84533326 41 TTTCTGCCCCCCACATACAGCATCATAGACGAAGTCAGTCA TTTCTGCCCCCCACATACAGCAGCATAGACGAAGTCAGTCA < 41bp 0.515896216245432 0.784885373750537 0.015417308 0.1002408 prediction 0.537978315010211 Functional Gain - SPATA31D5P ENSG00000240632 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:84533306 chr9:84533308 . . 0 23 hm5C_associated_SNPs_105146 0 0 0 0 0 unknown 0.500231766017491 0.500230403464698 0 0 hm5C_site_58291 DeepMRMD:0;iRNA_m5C:0 58292 chrX 46332193 46332193 1 + C A BLCA 46332189 + 46332169 46332209 41 ATTCATTTTCTTCTAGAAGTCTGGCAAGTTGATGAGCAGAT ATTCATTTTCTTCTAGAAGTCTGGAAAGTTGATGAGCAGAT < 41bp 0.384586059419255 0.768988826795878 0.055107117 0.07869187 prediction 0.537977653591756 Functional Gain - KRBOX4 ENSG00000147121 CDS Human protein_coding chrX:46332189 chrX:46332193 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_105147 0 0 1 0 1 Cytosol 0.500241361718994 0.50023131586046 0 0 hm5C_site_58292 DeepMRMD:0;iRNA_m5C:0 58293 chr20 5904131 5904131 1 + T G OV 5904129 + 5904109 5904149 41 TCTTGGGTGAAGGACACCACCGTGTCCAAGAAAACCAGATG TCTTGGGTGAAGGACACCACCGGGTCCAAGAAAACCAGATG < 41bp 0.425060289328042 0.768987561802703 0.14767966 0.48084462 prediction 0.537975123605406 Functional Gain - CHGB ENSG00000089199 CDS Human protein_coding chr20:5904129 chr20:5904131 synonymous SNV . 0 23 hm5C_associated_SNPs_105148 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_58293 DeepMRMD:0;iRNA_m5C:0 58294 chr1 240176397 240176397 1 + C A rs16848846 240176393 + 240176373 240176413 41 ATCCACGTGAAACTGGATGGCAGCCGTCTCATAAAGGCTCA ATCCACGTGAAACTGGATGGCAGCAGTCTCATAAAGGCTCA < 41bp 0.61638323050926 0.885369974214157 0.17675892 0.2031323 prediction 0.537973487409793 Functional Gain - RPS7P5 ENSG00000217327 ncRNA_exonic Human processed_pseudogene chr1:240176393 chr1:240176397 . . 0 25 hm5C_associated_SNPs_105149 0 0 0 0 0 unknown 0.500231643921095 0.500231644193324 0 5.4445981056972e-10 hm5C_site_58294 DeepMRMD:0;iRNA_m5C:5.4445981056972e-10 58295 chr1 18152771 18152771 1 + C G rs201173044 18152770 + 18152750 18152790 41 CGTGGAGTCCTGCGAGATCTCCCTGCGCCCCCTGCTGGTCT CGTGGAGTCCTGCGAGATCTCGCTGCGCCCCCTGCTGGTCT < 41bp 0.564170737670287 0.833157326739358 0.22727746 0.39151898 prediction 0.537973178138142 Functional Gain - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18152770 chr1:18152771 synonymous SNV . 0 22 hm5C_associated_SNPs_105150 0 0 0 0 0 unknown 0.500231644991392 0.500231643921093 0 0 hm5C_site_58295 DeepMRMD:0;iRNA_m5C:0 58296 chrX 12817403 12817403 1 + T C LUSC 12817401 + 12817381 12817421 41 TGCGGGGAAATTAACGACAACCTGATGGAACTCCTCATCAT TGCGGGGAAATTAACGACAACCCGATGGAACTCCTCATCAT < 41bp 0.518227446082322 0.787205960156482 0.026609153 0.021639317 prediction 0.537957028148321 Functional Gain - PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12817401 chrX:12817403 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_105151 0 0 1 0 0 Ribosome 0.500231643920788 0.500231642782055 0 0 hm5C_site_58296 DeepMRMD:0;iRNA_m5C:0 58297 chr3 119452224 119452224 1 + T C LIHC 119452222 + 119452202 119452242 41 TTCCCATAGGATTAGTGGAACTTGAGTCATGTCTCCCAGAT TTCCCATAGGATTAGTGGAACTCGAGTCATGTCTCCCAGAT < 41bp 0.488831113965651 0.768974923353589 0.0955295 0.17721015 prediction 0.537949846707178 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119452222 chr3:119452224 synonymous SNV . 0 23 hm5C_associated_SNPs_105152 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58297 DeepMRMD:0;iRNA_m5C:0 58298 chr3 49209057 49209057 1 + T A rs34571182 49209053 + 49209033 49209073 41 AGCCCGACTTCAGCCCCAGCCAGATCCCGCGTCAACGGAGG AGCCCGACTTCAGCCCCAGCCAGAACCCGCGTCAACGGAGG < 41bp 0.493474843080566 0.768938459961679 0.28619426 0.26152492 prediction 0.537876919923357 Functional Gain - KLHDC8B ENSG00000185909 UTR5 Human protein_coding chr3:49209053 chr3:49209057 . . 0 25 hm5C_associated_SNPs_105153 0 0 1 0 1 Cytosol 0.500231643921107 0.500231644032236 0 2.22258433879574e-10 hm5C_site_58298 DeepMRMD:0;iRNA_m5C:2.22258433879574e-10 58299 chr4 187088243 187088243 1 + C A LUSC 187088239 + 187088219 187088259 41 TGTCAAGGCCCAGCACAACCCACACGTTCCGGGTGGGTTCT TGTCAAGGCCCAGCACAACCCACAAGTTCCGGGTGGGTTCT < 41bp 0.343923581898359 0.768934862705458 0.15391266 0.21250051 prediction 0.537869725410916 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187088239 chr4:187088243 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_105154 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_58299 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 58300 chr15 35529956 35529956 1 + T A rs142510218 35529952 + 35529932 35529972 41 TTCAAGCTCCTCCTGCAACTCACATATCTTGACGGCTATGA TTCAAGCTCCTCCTGCAACTCACAAATCTTGACGGCTATGA < 41bp 0.45860211188906 0.768928404508801 0.043523252 0.062232584 prediction 0.537856809017601 Functional Gain - ANP32AP1 ENSG00000259516 ncRNA_exonic Human transcribed_processed_pseudogene chr15:35529952 chr15:35529956 . . 0 25 hm5C_associated_SNPs_105155 0 0 0 2 0 unknown 0.500231643574174 0.500231643867666 0 5.86982462635888e-10 hm5C_site_58300 DeepMRMD:0;iRNA_m5C:5.86982462635888e-10 58301 chr14 52781562 52781562 1 + T G UCEC 52781559 + 52781539 52781579 41 TTCGTACGCGCGGAACCAGACCCTGGTGGCACTGGCGCCCG TTCGTACGCGCGGAACCAGACCCGGGTGGCACTGGCGCCCG < 41bp 0.640647939840938 0.909573863349762 0.17079708 0.15700132 prediction 0.537851847017648 Functional Gain - PTGER2 ENSG00000125384 CDS Human protein_coding chr14:52781559 chr14:52781562 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_105156 0 0 0 0 0 exosome 0.500214168120851 0.500231643925243 0 3.4951608784084e-05 hm5C_site_58301 DeepMRMD:0;iRNA_m5C:3.4951608784084e-05 58302 chr10 38740319 38740319 1 + C G rs558272097 38740318 + 38740298 38740338 41 CTAGGCCCAGCTTGGGCCTCCCGGCGGCCTCTGCAGGCCCA CTAGGCCCAGCTTGGGCCTCCGGGCGGCCTCTGCAGGCCCA < 41bp 0.485746817377009 0.768915106868287 0.8888234 0.9300004 prediction 0.537830213736574 Functional Gain - LINC00999 ENSG00000225119;ENSG00000228882 intergenic Human other chr10:38740318 chr10:38740319 . . 0 22 hm5C_associated_SNPs_105157 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643921092 0.0823539999999998 0 hm5C_site_58302 DeepMRMD:0.0823539999999998;iRNA_m5C:0 58303 chrX 30260839 30260839 1 + C A LUAD 30260835 + 30260815 30260855 41 ACCAGAGCAGTGCCTGGACCCTTCCAAGGAATGGGCTTCTG ACCAGAGCAGTGCCTGGACCCTTCAAAGGAATGGGCTTCTG < 41bp 0.363029679341286 0.768909471133927 0.050804734 0.6252096 prediction 0.537818942267854 Functional Gain - MAGEB4 ENSG00000120289 CDS Human protein_coding chrX:30260835 chrX:30260839 nonsynonymous SNV 0.006 3 25 hm5C_associated_SNPs_105158 0 0 0 0 0 Nucleus 0.500231643922543 0.500231653545088 0.2504192 1.92450897440466e-08 hm5C_site_58303 DeepMRMD:0.2504192;iRNA_m5C:1.92450897440466e-08 58304 chr16 24267221 24267221 1 + C G rs116450476 24267220 + 24267200 24267240 41 GTGGGCTTGACTGGGCAGAGCCGAGCCGGCTGGCTGACCCG GTGGGCTTGACTGGGCAGAGCGGAGCCGGCTGGCTGACCCG < 41bp 0.534127952523855 0.803034694210625 0.2654692 0.77530414 prediction 0.537813483373542 Functional Gain - CACNG3 ENSG00000006116 UTR5 Human protein_coding chr16:24267220 chr16:24267221 . . 0 22 hm5C_associated_SNPs_105159 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0.55060828 0 hm5C_site_58304 DeepMRMD:0.55060828;iRNA_m5C:0 58305 chr2 228197226 228197226 1 + T A LUSC 228197222 + 228197202 228197242 41 ACCCCTGGCACTGAAAACACCACCTCGTGTACTTACGCTGA ACCCCTGGCACTGAAAACACCACCACGTGTACTTACGCTGA < 41bp 0.441529007294809 0.768898492748136 0.070438385 0.08438897 prediction 0.537796985496271 Functional Gain - MFF ENSG00000168958 CDS Human protein_coding chr2:228197222 chr2:228197226 synonymous SNV . 0 25 hm5C_associated_SNPs_105160 0 0 1 0 2 Cytosol 0.500231643920597 0.500231643869576 0 0 hm5C_site_58305 DeepMRMD:0;iRNA_m5C:0 58306 chr19 46717496 46717496 1 + C G rs3745800 46717495 + 46717475 46717515 41 TGGACCTGAGTTCAACAAGCCCAGAGTCGGGGCTCTGGGTT TGGACCTGAGTTCAACAAGCCGAGAGTCGGGGCTCTGGGTT < 41bp 0.481600519876059 0.768896316978432 0.028157055 0.44903266 prediction 0.537792633956865 Functional Gain - LOC93429 ENSG00000268460 ncRNA_exonic Human processed_transcript chr19:46717495 chr19:46717496 . . 0 22 hm5C_associated_SNPs_105161 0 0 0 0 0 unknown 0.500231643936723 0.500232277074807 0 1.26627616769959e-06 hm5C_site_58306 DeepMRMD:0;iRNA_m5C:1.26627616769959e-06 58307 chr18 29784155 29784155 1 + T C ESCA 29784153 + 29784133 29784173 41 CTCTCCTGTAAGCTGCTGGTCTTCAGTAGGAAATAGGCGGG CTCTCCTGTAAGCTGCTGGTCTCCAGTAGGAAATAGGCGGG < 41bp 0.481290298807332 0.768889549323357 0.06935206 0.926419 prediction 0.537779098646713 Functional Gain - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29784153 chr18:29784155 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_105162 0 0 0 0 1 exosome 0.500231643912226 0.500231643950983 0.852838 7.75135511332792e-11 hm5C_site_58307 DeepMRMD:0.852838;iRNA_m5C:7.75135511332792e-11 58308 chr22 24237106 24237106 1 + G T ESCA 24237110 - 24237090 24237130 41 TGTCCGGGCTGATGCGCAGGCGCTCGGCCAGCAGGCCGCAC TGTCCGGGCTGATGCGCAGGCGCTAGGCCAGCAGGCCGCAC < 41bp 0.636459533741679 0.905331407342878 0.21864077 0.28892836 prediction 0.537743747202397 Functional Gain - MIF ENSG00000240972;ENSG00000251357 CDS Human other chr22:24237110 chr22:24237106 stopgain 0.973 1 25 hm5C_associated_SNPs_105163 0 0 1 0 0 Ribosome 0.500231643930202 0.500231643921092 0 0 hm5C_site_58308 DeepMRMD:0;iRNA_m5C:0 58309 chr4 186997801 186997801 1 + T A SARC 186997797 + 186997777 186997817 41 AGACAGACTTTGCCTTGTATCTACTTTTGGGGGGGCCTTTT AGACAGACTTTGCCTTGTATCTACATTTGGGGGGGCCTTTT < 41bp 0.468149582648328 0.768864951919545 0.050719142 0.8463985 prediction 0.53772990383909 Functional Gain - TLR3 ENSG00000164342 CDS Human protein_coding chr4:186997797 chr4:186997801 nonsynonymous SNV 0.067 0 25 hm5C_associated_SNPs_105164 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.692797 0 hm5C_site_58309 DeepMRMD:0.692797;iRNA_m5C:0 58310 chr4 119979907 119979907 1 + C A rs56383383 119979903 + 119979883 119979923 41 CTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACACCT CTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACCACACCT < 41bp 0.452695926181351 0.768854420481601 0.82826626 0.8633045 prediction 0.537708840963201 Functional Gain - SYNPO2 ENSG00000172403 UTR3 Human protein_coding chr4:119979903 chr4:119979907 . . 0 25 hm5C_associated_SNPs_105165 0 0 0 0 0 Nucleus 0.500234364221509 0.500231643742475 0.07007648 0 hm5C_site_58310 DeepMRMD:0.07007648;iRNA_m5C:0 58311 chr11 7065050 7065050 1 + C A LUAD 7065046 + 7065026 7065066 41 AAGATAAAGCGTTTATAAGCCAGGCAATGAGATGTTTCCCA AAGATAAAGCGTTTATAAGCCAGGAAATGAGATGTTTCCCA < 41bp 0.378834548527427 0.768852087016909 0.3162521 0.52987045 prediction 0.537704174033817 Functional Gain - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7065046 chr11:7065050 nonsynonymous SNV 0.925 3 25 hm5C_associated_SNPs_105166 0 0 0 0 0 cytosol 0.500231621825704 0.500231642926435 0.0597409 4.22014621026534e-08 hm5C_site_58311 DeepMRMD:0.0597409;iRNA_m5C:4.22014621026534e-08 58312 chr2 27435287 27435287 1 + C A SARC 27435283 + 27435263 27435303 41 TACGACCCTGGTGCCCTGGGCTGCCGCCCTGCTCCTCGCTC TACGACCCTGGTGCCCTGGGCTGCAGCCCTGCTCCTCGCTC < 41bp 0.392434628672772 0.768849247263793 0.17911807 0.25574026 prediction 0.537698494527586 Functional Gain - ATRAID ENSG00000138085 CDS Human protein_coding chr2:27435283 chr2:27435287 synonymous SNV . 0 25 hm5C_associated_SNPs_105167 0 0 1 0 1 Endoplasmic reticulum 0.500231643921094 0.500231644036545 0 2.3090329648312e-10 hm5C_site_58312 DeepMRMD:0;iRNA_m5C:2.3090329648312e-10 58313 chr16 27790365 27790365 1 + C G rs78113825 27790364 + 27790344 27790384 41 GTGGGAGACCAGACCCTACCCCGCAACTCCAGTAAGCAGGG GTGGGAGACCAGACCCTACCCGGCAACTCCAGTAAGCAGGG < 41bp 0.488077250244962 0.768847446044312 0.14304915 0.6266413 prediction 0.537694892088624 Functional Gain - KIAA0556 ENSG00000047578 UTR3 Human protein_coding chr16:27790364 chr16:27790365 . . 0 22 hm5C_associated_SNPs_105168 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.2532826 0 hm5C_site_58313 DeepMRMD:0.2532826;iRNA_m5C:0 58314 chr15 40751214 40751214 1 + C A UCEC 40751210 + 40751190 40751230 41 TTGGAGGAGGAAGTCGGGACCTGTCTCCAGAGCCAGCACCC TTGGAGGAGGAAGTCGGGACCTGTATCCAGAGCCAGCACCC < 41bp 0.360087341590302 0.768835614247545 0.20819154 0.5398928 prediction 0.53767122849509 Functional Gain - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40751210 chr15:40751214 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105169 0 0 1 0 0 chromatin 0.500231870841263 0.500231643921094 0.0797855999999999 0 hm5C_site_58314 DeepMRMD:0.0797855999999999;iRNA_m5C:0 58315 chr13 49794748 49794748 1 + C G rs202165616 49794744 + 49794724 49794764 41 ACCTACTCATCCTGCTCGGGCTGCCGTTCGACCTGTACCGC ACCTACTCATCCTGCTCGGGCTGCGGTTCGACCTGTACCGC < 41bp 0.511065878015465 0.779900078882541 0.27040097 0.3651741 prediction 0.537668401734153 Functional Gain - MLNR ENSG00000102539 CDS Human protein_coding chr13:49794744 chr13:49794748 nonsynonymous SNV 0.977 3 25 hm5C_associated_SNPs_105170 0 0 0 0 0 exosome 0.500231643916268 0.500231643921018 0 9.50062251092731e-12 hm5C_site_58315 DeepMRMD:0;iRNA_m5C:9.50062251092731e-12 58316 chr16 55719131 55719131 1 + C A LUAD 55719127 + 55719107 55719147 41 CCCCAGTGGCAGCTCTTGCTCTGTCTGATGGTCGTCGTCAT CCCCAGTGGCAGCTCTTGCTCTGTATGATGGTCGTCGTCAT < 41bp 0.348353390732666 0.768830208566075 0.08591583 0.046666026 prediction 0.537660417132151 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55719127 chr16:55719131 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_105171 0 0 0 0 1 exosome 0.500231643921122 0.500231643976648 0 1.11052056439576e-10 hm5C_site_58316 DeepMRMD:0;iRNA_m5C:1.11052056439576e-10 58317 chr3 53195400 53195400 1 + C A rs550252787 53195396 + 53195376 53195416 41 GCGCGCGCCGGGGAGCGGCGCCCCCGCCGCTGCCGCCGCGA GCGCGCGCCGGGGAGCGGCGCCCCAGCCGCTGCCGCCGCGA < 41bp 0.44781854661659 0.768825248617397 0.47885367 0.4051087 prediction 0.537650497234795 Functional Gain - PRKCD ENSG00000163932 UTR5 Human protein_coding chr3:53195396 chr3:53195400 . . 0 25 hm5C_associated_SNPs_105172 0 0 1 0 1 Cytosol 0.500231645443587 0.500231644076503 0 0 hm5C_site_58317 DeepMRMD:0;iRNA_m5C:0 58318 chr4 647648 647648 1 + T A LUAD 647644 + 647624 647664 41 TGTGCCCCTCCCTCCAGGTGCTGCTGTGGTCGGCCAACAAG TGTGCCCCTCCCTCCAGGTGCTGCAGTGGTCGGCCAACAAG < 41bp 0.435185992301756 0.768820205871357 0.19184572 0.3055908 prediction 0.537640411742715 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:647644 chr4:647648 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_105173 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_58318 DeepMRMD:0;iRNA_m5C:0 58319 chr3 134967263 134967263 1 + C A rs56317545 134967259 + 134967239 134967279 41 TGTTGGCAGAAGGACCGGAACAGCCGGCCCCGGTTTGCGGA TGTTGGCAGAAGGACCGGAACAGCAGGCCCCGGTTTGCGGA < 41bp 0.363612459932143 0.7688186018031 0.116941124 0.1350343 prediction 0.5376372036062 Functional Gain - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134967259 chr3:134967263 synonymous SNV . 0 25 hm5C_associated_SNPs_105174 0 0 0 0 1 exosome 0.500231643921079 0.500231643921092 0 2.77555756156289e-14 hm5C_site_58319 DeepMRMD:0;iRNA_m5C:2.77555756156289e-14 58320 chr17 48246665 48246665 1 + C G LUSC 48246664 + 48246644 48246684 41 GGGTGGGGCATGGCCCCCATCCCAGTCCCCCTTCCCTCCCA GGGTGGGGCATGGCCCCCATCGCAGTCCCCCTTCCCTCCCA < 41bp 0.454108245087747 0.768785623564466 0.4441998 0.92614967 prediction 0.537571247128932 Functional Gain - SGCA ENSG00000108823 CDS Human protein_coding chr17:48246664 chr17:48246665 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_105175 0 0 0 0 0 Cytosol 0.500231643921205 0.500231643921092 0.85229934 0 hm5C_site_58320 DeepMRMD:0.85229934;iRNA_m5C:0 58321 chr19 42585387 42585387 1 + C G rs561969622 42585386 + 42585366 42585406 41 ACTGCTGTGGAGGCGCTACCCCTGGTGGAAGCCATTGAGAT ACTGCTGTGGAGGCGCTACCCGTGGTGGAAGCCATTGAGAT < 41bp 0.537571447850885 0.806326315953135 0.08645618 0.45935634 prediction 0.5375097362045 Functional Gain - ZNF574 ENSG00000105732 CDS Human protein_coding chr19:42585386 chr19:42585387 nonsynonymous SNV 0.935 0 22 hm5C_associated_SNPs_105176 0 0 1 0 0 Cytosol 0.500231643917113 0.500231643920752 0 7.2784001048376e-12 hm5C_site_58321 DeepMRMD:0;iRNA_m5C:7.2784001048376e-12 58322 chr17 48562324 48562324 1 + T A rs116530870 48562320 + 48562300 48562340 41 GTTGTCGGGTGCCGTCTCTGCTCCTTGTGGTTATTGCTCAG GTTGTCGGGTGCCGTCTCTGCTCCATGTGGTTATTGCTCAG < 41bp 0.578266207171515 0.847021052746633 0.41767123 0.94248545 prediction 0.537509691150237 Functional Gain - RSAD1 ENSG00000136444 UTR3 Human protein_coding chr17:48562320 chr17:48562324 . . 0 25 hm5C_associated_SNPs_105177 0 0 1 0 0 Ribosome 0.500231643921203 0.500231643920642 0.8849709 0 hm5C_site_58322 DeepMRMD:0.8849709;iRNA_m5C:0 58323 chr5 175722149 175722149 1 + C A UCEC 175722145 + 175722125 175722165 41 GTTTTTGATGGACTTTGTGTCACCCCAGCATTACCCACCAA GTTTTTGATGGACTTTGTGTCACCACAGCATTACCCACCAA < 41bp 0.342123212244475 0.768749377742833 0.109062135 0.049417704 prediction 0.537498755485667 Functional Gain - SIMC1 ENSG00000170085 CDS Human protein_coding chr5:175722145 chr5:175722149 synonymous SNV . 0 25 hm5C_associated_SNPs_105178 0 0 0 2 0 chromatin 0.500231643921093 0.500231643423977 0 0 hm5C_site_58323 DeepMRMD:0;iRNA_m5C:0 58324 chr12 1940175 1940175 1 + C G UCEC 1940174 + 1940154 1940194 41 TTCTCCTGCAAGTGTGACAGCCGCAGCCTGGAGGTGGACTG TTCTCCTGCAAGTGTGACAGCGGCAGCCTGGAGGTGGACTG < 41bp 0.562554087365754 0.831302046320676 0.77791876 0.9069018 prediction 0.537495917909845 Functional Gain - LRTM2 ENSG00000166159 CDS Human protein_coding chr12:1940174 chr12:1940175 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_105179 0 0 0 0 1 exosome 0.50023196831386 0.500231643555884 0.25796608 0 hm5C_site_58324 DeepMRMD:0.25796608;iRNA_m5C:0 Amyotrophic lateral sclerosis 58325 chr19 34895654 34895654 1 + C G LUSC 34895653 + 34895633 34895673 41 ATTGCCCGCTGGAAGGCTCCCCGTTTCACCGTCTGCTGCAC ATTGCCCGCTGGAAGGCTCCCGGTTTCACCGTCTGCTGCAC < 41bp 0.463199124739264 0.768746089088652 0.32351926 0.81192327 prediction 0.537492178177305 Functional Gain - PDCD2L ENSG00000126249;ENSG00000266953 CDS Human other chr19:34895653 chr19:34895654 nonsynonymous SNV 0.462 3 22 hm5C_associated_SNPs_105180 0 0 1 0 1 Ribosome 0.500231643941556 0.500231643921093 0.62384654 0 hm5C_site_58325 DeepMRMD:0.62384654;iRNA_m5C:0 58326 chr4 4864535 4864535 1 + C A LUAD 4864531 + 4864511 4864551 41 CTGGCGCTGGAGCGCAAGTTCCGCCAGAAGCAGTACCTGTC CTGGCGCTGGAGCGCAAGTTCCGCAAGAAGCAGTACCTGTC < 41bp 0.364568334981101 0.768737323049749 0.43582687 0.23803088 prediction 0.537474646099498 Functional Gain - MSX1 ENSG00000163132 CDS Human protein_coding chr4:4864531 chr4:4864535 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105181 0 0 0 0 0 Cytosol 0.500231619044197 0.500234307584651 0 5.37708090875277e-06 hm5C_site_58326 DeepMRMD:0;iRNA_m5C:5.37708090875277e-06 58327 chr14 20529043 20529043 1 + C A rs1959628 20529039 + 20529019 20529059 41 CGTATTTTATACAGTTATCACACCCTTACTGAATCCGAGTA CGTATTTTATACAGTTATCACACCATTACTGAATCCGAGTA < 41bp 0.381058149098316 0.768735007233208 0.04417017 0.21826333 prediction 0.537470014466416 Functional Gain - OR4L1 ENSG00000176246 CDS Human protein_coding chr14:20529039 chr14:20529043 synonymous SNV . 0 25 hm5C_associated_SNPs_105182 0 0 0 0 0 unknown 0.500231626961967 0.500247923094538 0 3.25922651409627e-05 hm5C_site_58327 DeepMRMD:0;iRNA_m5C:3.25922651409627e-05 58328 chr3 3887829 3887829 1 + C G STAD 3887828 + 3887808 3887848 41 GGAAGATACACATGTGTTGCCCAGAATGTCCAAGGGGCAGA GGAAGATACACATGTGTTGCCGAGAATGTCCAAGGGGCAGA < 41bp 0.547294180625806 0.816021331716628 0.07840589 0.45326197 prediction 0.537454302181644 Functional Gain - LRRN1 ENSG00000175928 CDS Human protein_coding chr3:3887828 chr3:3887829 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_105183 0 0 1 0 0 Cytosol 0.500231643921422 0.500231643931927 0 2.10091943841917e-11 hm5C_site_58328 DeepMRMD:0;iRNA_m5C:2.10091943841917e-11 58329 chr18 2890828 2890828 1 + C A BRCA 2890824 + 2890804 2890844 41 GGGCTCAGCAGCCAGCACCCCAAGCCTGACACCACTGTTAG GGGCTCAGCAGCCAGCACCCCAAGACTGACACCACTGTTAG < 41bp 0.365004459430511 0.768719841877626 0.66878664 0.64618194 prediction 0.537439683755251 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2890824 chr18:2890828 nonsynonymous SNV 0.754 3 25 hm5C_associated_SNPs_105184 0 0 0 0 0 Ribosome 0.500231643921072 0.500231643921092 0 4.15223411209809e-14 hm5C_site_58329 DeepMRMD:0;iRNA_m5C:4.15223411209809e-14 58330 chr1 2235451 2235451 1 + C A UCEC 2235447 + 2235427 2235467 41 AAGCGGAAGCTGACTGTGGACACCCCAGGAGCCCCAGAGAC AAGCGGAAGCTGACTGTGGACACCACAGGAGCCCCAGAGAC < 41bp 0.349218670431654 0.768718241462379 0.10990247 0.28820166 prediction 0.537436482924758 Functional Gain - SKI ENSG00000157933 CDS Human protein_coding chr1:2235447 chr1:2235451 nonsynonymous SNV 0.008 1 25 hm5C_associated_SNPs_105185 0 0 1 0 1 Endoplasmic reticulum 0.500231647820206 0.500231684353137 0 7.30658618053326e-08 hm5C_site_58330 DeepMRMD:0;iRNA_m5C:7.30658618053326e-08 58331 chr10 73724266 73724266 1 + C G rs4148907 73724265 + 73724245 73724285 41 TTCCAGCGTGCCGACCGGCCCCGCAGCGCCTCCATCCCTCC TTCCAGCGTGCCGACCGGCCCGGCAGCGCCTCCATCCCTCC < 41bp 0.528545879372061 0.797250203140221 0.047200084 0.27689394 prediction 0.53740864753632 Functional Gain - CHST3 ENSG00000122863 UTR5 Human protein_coding chr10:73724265 chr10:73724266 . . 0 22 hm5C_associated_SNPs_105186 4 0 1 0 0 Ribosome 0.500231643921092 0.500231643921071 0 0 hm5C_site_58331 DeepMRMD:0;iRNA_m5C:0 Spondyloepiphyseal dysplasia with congenital joint dislocations Spondyloepiphyseal dysplasia with congenital joint dislocations 58332 chr20 23017238 23017238 1 + C A HNSC 23017234 + 23017214 23017254 41 CCTGCCAGCAGGAAGCCCTGCAACCAGAACCCGGCCGCAAG CCTGCCAGCAGGAAGCCCTGCAACAAGAACCCGGCCGCAAG < 41bp 0.396014427262836 0.768676447999709 0.072277635 0.07641211 prediction 0.537352895999418 Functional Gain - SSTR4 ENSG00000132671 CDS Human protein_coding chr20:23017234 chr20:23017238 nonsynonymous SNV 0.007 1 25 hm5C_associated_SNPs_105187 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58332 DeepMRMD:0;iRNA_m5C:0 58333 chr1 23696131 23696131 1 + C G LAML 23696130 + 23696110 23696150 41 CACAGGCTCATAGGCAGATCCCTGAGACCACAGAGGCTGGC CACAGGCTCATAGGCAGATCCGTGAGACCACAGAGGCTGGC < 41bp 0.455020546671207 0.768670920302288 0.27844298 0.34143886 prediction 0.537341840604575 Functional Gain - ZNF436-AS1 ENSG00000249087 CDS Human antisense chr1:23696130 chr1:23696131 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_105188 0 0 0 0 0 unknown 0.500231643859294 0.500231650733435 0 1.37482822903934e-08 hm5C_site_58333 DeepMRMD:0;iRNA_m5C:1.37482822903934e-08 58334 chr6 144510243 144510243 1 + C G rs182386797 144510239 + 144510219 144510259 41 GGCATAATCATGGCTTACTGCAGCCTTAAACTCCCAGGCTC GGCATAATCATGGCTTACTGCAGCGTTAAACTCCCAGGCTC < 41bp 0.517168090835527 0.785821187091278 0.6706178 0.85170996 prediction 0.537306192511503 Functional Gain - STX11 ENSG00000135604 downstream Human protein_coding chr6:144510239 chr6:144510243 . . 0 25 hm5C_associated_SNPs_105189 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643920476 0.36218432 0 hm5C_site_58334 DeepMRMD:0.36218432;iRNA_m5C:0 58335 chr4 1808592 1808592 1 + C G rs145020302 1808588 + 1808568 1808608 41 GCGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCT GCGGGAGTGCTGGCATGCCGCGCCGTCCCAGAGGCCCACCT < 41bp 0.487793857597876 0.768641041138008 0.029661804 0.05142954 prediction 0.537282082276016 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808588 chr4:1808592 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_105190 1 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58335 DeepMRMD:0;iRNA_m5C:0 not specified not specified 58336 chr11 55340324 55340324 1 + C A SKCM 55340320 + 55340300 55340340 41 AAAGCACTTTCCACATGTGTCTCCCACATCATTGTGGTCAT AAAGCACTTTCCACATGTGTCTCCAACATCATTGTGGTCAT < 41bp 0.3664402714414 0.768638411351879 0.034335434 0.94793344 prediction 0.537276822703757 Functional Gain - OR4C16 ENSG00000181935 CDS Human other chr11:55340320 chr11:55340324 nonsynonymous SNV 0.907 2 25 hm5C_associated_SNPs_105191 0 0 0 0 0 unknown 0.500231618183306 0.50023099217929 0.89586688 0 hm5C_site_58336 DeepMRMD:0.89586688;iRNA_m5C:0 58337 chrX 152228142 152228142 1 + C G rs184001061 152228141 + 152228121 152228161 41 AGGCTCTGCTCACTGCTGTCCCGCGTCATGAGCACCACCTC AGGCTCTGCTCACTGCTGTCCGGCGTCATGAGCACCACCTC < 41bp 0.50745194166523 0.77608892915154 0.13641226 0.89044046 prediction 0.537273974972619 Functional Gain - PNMA3 ENSG00000183837 UTR3 Human protein_coding chrX:152228141 chrX:152228142 . . 0 22 hm5C_associated_SNPs_105192 0 0 0 0 0 exosome 0.500241434224697 0.500231700322534 0.78088092 0 hm5C_site_58337 DeepMRMD:0.78088092;iRNA_m5C:0 58338 chr7 47698631 47698631 1 + C A LUAD 47698627 + 47698607 47698647 41 GGCAATCAGTGAGGCTGGACCTGCCCAGAATTCATGTGGAA GGCAATCAGTGAGGCTGGACCTGCACAGAATTCATGTGGAA < 41bp 0.373340950268012 0.768624025528571 0.15874091 0.14858165 prediction 0.537248051057142 Functional Gain - C7orf65 ENSG00000221845 CDS Human lincRNA chr7:47698627 chr7:47698631 synonymous SNV . 0 25 hm5C_associated_SNPs_105193 0 0 0 0 0 unknown 0.500227203574732 0.500231653111873 0 8.89907428036629e-06 hm5C_site_58338 DeepMRMD:0;iRNA_m5C:8.89907428036629e-06 58339 chr1 155289624 155289624 1 + G C LUAD 155289625 - 155289605 155289645 41 GGATGTCAGTGCCAATTTTGCCGGTCACACTGGGGTCCCCA GGATGTCAGTGCCAATTTTGCGGGTCACACTGGGGTCCCCA < 41bp 0.46364169310106 0.768608895818788 0.40780464 0.9159026 prediction 0.537217791637576 Functional Gain - FDPS ENSG00000160752 CDS Human protein_coding chr1:155289625 chr1:155289624 nonsynonymous SNV 0.966 4 22 hm5C_associated_SNPs_105194 0 0 0 0 1 Cytosol 0.50023259516595 0.500231643985371 0.8318052 0 hm5C_site_58339 DeepMRMD:0.8318052;iRNA_m5C:0 58340 chr11 74952733 74952733 1 + C G rs149491762 74952729 + 74952709 74952749 41 CGCGCTGGCCGGCCTGGACCCCGACGAGCTGCGCGCGCTGG CGCGCTGGCCGGCCTGGACCCCGAGGAGCTGCGCGCGCTGG < 41bp 0.498360364306858 0.76860003917318 0.7186516 0.8937894 prediction 0.537200078346361 Functional Gain - TPBGL ENSG00000261594 CDS Human protein_coding chr11:74952729 chr11:74952733 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_105195 0 0 0 0 0 exosome 0.500231897281984 0.500231646844509 0.3502756 0 hm5C_site_58340 DeepMRMD:0.3502756;iRNA_m5C:0 58341 chr17 66255332 66255332 1 + C G rs575566872 66255328 + 66255308 66255348 41 CGCGTCGCTGTCCCCGGCTGCGCCCAGGCCGGCGGGCCCAG CGCGTCGCTGTCCCCGGCTGCGCCGAGGCCGGCGGGCCCAG < 41bp 0.490926778062119 0.768584215503873 0.20828006 0.42165044 prediction 0.537168431007746 Functional Gain - ARSG ENSG00000141337 UTR5 Human protein_coding chr17:66255328 chr17:66255332 . . 0 25 hm5C_associated_SNPs_105196 0 0 0 0 0 chromatin 0.500231643914841 0.500231643304888 0 0 hm5C_site_58341 DeepMRMD:0;iRNA_m5C:0 58342 chr3 39433016 39433016 1 + C G CESC 39433015 + 39432995 39433035 41 TATTTCTTGCGAGGCCATCCCCCAACCGCCCTGGAGTCAGT TATTTCTTGCGAGGCCATCCCGCAACCGCCCTGGAGTCAGT < 41bp 0.568265935957939 0.836844835617815 0.1273242 0.30322608 prediction 0.537157799319752 Functional Gain - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39433015 chr3:39433016 nonsynonymous SNV 0.976 1 22 hm5C_associated_SNPs_105197 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643921093 0 8.88178419700125e-16 hm5C_site_58342 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 58343 chr6 42890948 42890948 1 + C A LUAD 42890944 + 42890924 42890964 41 CCTTCACCTATGGCCCTTCCCCAGCAACGGATGGCACCTGG CCTTCACCTATGGCCCTTCCCCAGAAACGGATGGCACCTGG < 41bp 0.366842848481459 0.768572793636026 0.12191248 0.2170817 prediction 0.537145587272052 Functional Gain - PTCRA ENSG00000171611 CDS Human protein_coding chr6:42890944 chr6:42890948 nonsynonymous SNV 0.017 0 25 hm5C_associated_SNPs_105198 0 0 0 0 1 exosome 0.500231643921092 0.500231643921094 0 3.33066907387547e-15 hm5C_site_58343 DeepMRMD:0;iRNA_m5C:3.33066907387547e-15 58344 chr13 88327910 88327910 1 + C G LUAD 88327909 + 88327889 88327929 41 AATCTACCACCTCTTGTTGTCCGGAAACCTTTTGAACCGTC AATCTACCACCTCTTGTTGTCGGGAAACCTTTTGAACCGTC < 41bp 0.462985810597811 0.768559102584841 0.4258082 0.9228051 prediction 0.537118205169683 Functional Gain - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88327909 chr13:88327910 synonymous SNV . 0 22 hm5C_associated_SNPs_105199 0 0 1 0 0 nucleus 0.50023164392109 0.500231643921092 0.8456102 4.88498130835069e-15 hm5C_site_58344 DeepMRMD:0.8456102;iRNA_m5C:4.88498130835069e-15 58345 chr12 105151256 105151256 1 + T A COAD 105151252 + 105151232 105151272 41 TCGAGGAGTTTGTGGCCTATCTCATCGACCCACACACCCAG TCGAGGAGTTTGTGGCCTATCTCAACGACCCACACACCCAG < 41bp 0.437623870159034 0.76854662291615 0.22364345 0.7457822 prediction 0.537093245832301 Functional Gain - CHST11 ENSG00000171310 CDS Human protein_coding chr12:105151252 chr12:105151256 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_105200 0 0 1 0 0 Nucleus 0.500231607604755 0.50023164953377 0.4915644 8.3858029409356e-08 hm5C_site_58345 DeepMRMD:0.4915644;iRNA_m5C:8.3858029409356e-08 58346 chr17 79203128 79203128 1 + G T STAD 79203132 - 79203112 79203152 41 CTGGGAGCCAGGTCTTCCTGCAGCCTCTGAGTTCAACCCCG CTGGGAGCCAGGTCTTCCTGCAGCATCTGAGTTCAACCCCG < 41bp 0.370937462858548 0.768541402704185 0.2774692 0.30672848 prediction 0.537082805408371 Functional Gain - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79203132 chr17:79203128 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_105201 0 0 1 0 0 chromatin 0.500231643921093 0.500231644118304 0 3.94420940352802e-10 hm5C_site_58346 DeepMRMD:0;iRNA_m5C:3.94420940352802e-10 58347 chr16 46964371 46964371 1 + C G rs182479770 46964370 + 46964350 46964390 41 TCTATGCTGTGATTTCCACACCGGGTCCGTGCAGAGGAAAC TCTATGCTGTGATTTCCACACGGGGTCCGTGCAGAGGAAAC < 41bp 0.509929221951767 0.778467379253119 0.12588525 0.88947666 prediction 0.537076314602703 Functional Gain - GPT2 ENSG00000166123 UTR3 Human protein_coding chr16:46964370 chr16:46964371 . . 0 22 hm5C_associated_SNPs_105202 0 0 1 0 0 Ribosome 0.500244175631235 0.50023164435148 0.77895332 0 hm5C_site_58347 DeepMRMD:0.77895332;iRNA_m5C:0 58348 chrX 54956525 54956525 1 + C G LUAD 54956524 + 54956504 54956544 41 CTGCTGACTTCGGTGGTACTCCCAGCAACAGCATTGGCTTT CTGCTGACTTCGGTGGTACTCGCAGCAACAGCATTGGCTTT < 41bp 0.470045578421974 0.768532575239837 0.28477988 0.69056964 prediction 0.537065150479675 Functional Gain - TRO ENSG00000067445 CDS Human protein_coding chrX:54956524 chrX:54956525 nonsynonymous SNV 0.004 2 22 hm5C_associated_SNPs_105203 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0.38113928 0 hm5C_site_58348 DeepMRMD:0.38113928;iRNA_m5C:0 58349 chr19 45561110 45561110 1 + C G rs77436067 45561109 + 45561089 45561129 41 AGAGGAGGAGGAGTCAGCGGCCGAGGAGGAGAGCAACTCGG AGAGGAGGAGGAGTCAGCGGCGGAGGAGGAGAGCAACTCGG < 41bp 0.456945833522108 0.768489858171496 0.84043 0.9038627 prediction 0.536979716342992 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561109 chr19:45561110 synonymous SNV . 0 22 hm5C_associated_SNPs_105204 0 0 1 0 2 chromatin 0.500231643921092 0.500231643921092 0.1268654 0 hm5C_site_58349 DeepMRMD:0.1268654;iRNA_m5C:0 58350 chr12 49666243 49666243 1 + C A UCEC 49666239 + 49666219 49666259 41 TCCATCCTCACCACCCACACCACCCTGGAGCACTCTGATTG TCCATCCTCACCACCCACACCACCATGGAGCACTCTGATTG < 41bp 0.332438646248818 0.768488920719831 0.014862806 0.01760292 prediction 0.536977841439662 Functional Gain - TUBA1C ENSG00000167553 CDS Human protein_coding chr12:49666239 chr12:49666243 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_105205 0 0 0 0 0 Cytosol 0.500232370580897 0.50024162816764 0 1.85151734846123e-05 hm5C_site_58350 DeepMRMD:0;iRNA_m5C:1.85151734846123e-05 58351 chr14 96706227 96706227 1 + C G rs2242966 96706226 + 96706206 96706246 41 AATACGATGCCACAGACTGTCCAGGAAGACAGAAACTAGGC AATACGATGCCACAGACTGTCGAGGAAGACAGAAACTAGGC < 41bp 0.491815276547721 0.768483597608362 0.14848912 0.90064615 prediction 0.536967195216724 Functional Gain - BDKRB2 ENSG00000168398 UTR5 Human protein_coding chr14:96706226 chr14:96706227 . . 0 22 hm5C_associated_SNPs_105206 0 0 0 0 0 exosome 0.50023164197608 0.500231643920122 0.8012923 3.88808429896415e-09 hm5C_site_58351 DeepMRMD:0.8012923;iRNA_m5C:3.88808429896415e-09 58352 chr12 121134240 121134240 1 + C A GBM 121134236 + 121134216 121134256 41 CAATAAGAACCGGGTGCAGTCAGGCCCCCGCACACCCAACC CAATAAGAACCGGGTGCAGTCAGGACCCCGCACACCCAACC < 41bp 0.636055149742623 0.904535830502968 0.9020737 0.900848 prediction 0.536961361520689 Functional Gain - MLEC ENSG00000110917 CDS Human protein_coding chr12:121134236 chr12:121134240 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_105207 0 0 1 0 0 Ribosome 0.500231593029447 0.50023164390602 0 1.01753145687056e-07 hm5C_site_58352 DeepMRMD:0;iRNA_m5C:1.01753145687056e-07 58353 chr2 211438123 211438123 1 + C G UCEC 211438119 + 211438099 211438139 41 TGGTGAAGTGGTTTTTAATACTGGCCTGGGAGGGTGAGTAA TGGTGAAGTGGTTTTTAATACTGGGCTGGGAGGGTGAGTAA < 41bp 0.513991118442157 0.782467285304652 0.31089783 0.42662847 prediction 0.53695233372499 Functional Gain - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211438119 chr2:211438123 synonymous SNV . 0 25 hm5C_associated_SNPs_105208 0 0 1 0 0 Nucleus 0.500231643921096 0.500231643921042 0 0 hm5C_site_58353 DeepMRMD:0;iRNA_m5C:0 58354 chr17 76167915 76167915 1 + C A UCEC 76167911 + 76167891 76167931 41 CCCCACTCCGGACCCCAACACTGCCTACGCCTCCTACCCAG CCCCACTCCGGACCCCAACACTGCATACGCCTCCTACCCAG < 41bp 0.648742283066347 0.91721390491832 0.14096212 0.58590156 prediction 0.536943243703946 Functional Gain - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167911 chr17:76167915 nonsynonymous SNV 0.416 0 25 hm5C_associated_SNPs_105209 0 0 1 4 1 Ribosome 0.500231644141034 0.500231643928347 0.17180312 0 hm5C_site_58354 DeepMRMD:0.17180312;iRNA_m5C:0 58355 chr3 14527633 14527633 1 + C G rs529102801 14527632 + 14527612 14527652 41 GTGGTGGGGAGGTGAGTGGACCAAAGGATATAGGCCCCAGG GTGGTGGGGAGGTGAGTGGACGAAAGGATATAGGCCCCAGG < 41bp 0.468494658325034 0.768451693565249 0.2628436 0.32632604 prediction 0.536903387130498 Functional Gain - SLC6A6 ENSG00000131389 UTR3 Human protein_coding chr3:14527632 chr3:14527633 . . 0 22 hm5C_associated_SNPs_105210 0 0 1 0 0 Nucleus 0.50023164676581 0.500231643921092 0 0 hm5C_site_58355 DeepMRMD:0;iRNA_m5C:0 58356 chr10 89604183 89604183 1 + C G rs576244292 89604179 + 89604159 89604199 41 ACTCCCTTCACCCCAATTGCCAAACAGCCCCCCAACTCCCT ACTCCCTTCACCCCAATTGCCAAAGAGCCCCCCAACTCCCT < 41bp 0.481982786224852 0.768447248345403 0.4576375 0.31544903 prediction 0.536894496690805 Functional Gain - CFL1P1 ENSG00000223820 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:89604179 chr10:89604183 . . 0 25 hm5C_associated_SNPs_105211 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_58356 DeepMRMD:0;iRNA_m5C:0 58357 chr19 5456238 5456238 1 + C G LUSC 5456234 + 5456214 5456254 41 CCCGACGACCCACCGTGCCACGACCTGGGCTGTCACCCCGT CCCGACGACCCACCGTGCCACGACGTGGGCTGTCACCCCGT < 41bp 0.481408953147919 0.76842862340296 0.21353829 0.5046232 prediction 0.53685724680592 Functional Gain - ZNRF4 ENSG00000105428 CDS Human protein_coding chr19:5456234 chr19:5456238 nonsynonymous SNV 0.008 0 25 hm5C_associated_SNPs_105212 0 0 0 0 0 unknown 0.500231643921092 0.500231643528375 0.0092464000000001 0 hm5C_site_58357 DeepMRMD:0.0092464000000001;iRNA_m5C:0 58358 chr3 88039965 88039965 1 + C G LUAD 88039964 + 88039944 88039984 41 ACTGTTAAACAGAATGCCATCCAAAATTCTGGTGTCCCTCA ACTGTTAAACAGAATGCCATCGAAAATTCTGGTGTCCCTCA < 41bp 0.525708915696334 0.794133816548006 0.28097838 0.4746972 prediction 0.536849801703345 Functional Gain - HTR1F ENSG00000179097 CDS Human protein_coding chr3:88039964 chr3:88039965 synonymous SNV . 0 22 hm5C_associated_SNPs_105213 0 0 0 0 0 exosome 0.500231643906911 0.500231641488368 0 0 hm5C_site_58358 DeepMRMD:0;iRNA_m5C:0 58359 chr6 26465629 26465629 1 + T A GBM 26465625 + 26465605 26465645 41 TGCAAAAAGAGGAAGAACTTCAAGTAAAAGGTAAAAGAGGC TGCAAAAAGAGGAAGAACTTCAAGAAAAAGGTAAAAGAGGC < 41bp 0.459622139659941 0.768420857124079 0.25570643 0.26484805 prediction 0.536841714248158 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26465625 chr6:26465629 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_105214 0 0 1 0 1 Endoplasmic reticulum 0.500231643895743 0.500231643920575 0 4.96642726943719e-11 hm5C_site_58359 DeepMRMD:0;iRNA_m5C:4.96642726943719e-11 58360 chr1 41483484 41483484 1 + C A UCEC 41483480 + 41483460 41483500 41 CACCAGGCCGCTGTCCTCTACTCCCACGAGCAGGCTGCCGC CACCAGGCCGCTGTCCTCTACTCCAACGAGCAGGCTGCCGC < 41bp 0.361573469414089 0.768415622040418 0.21144319 0.9346714 prediction 0.536831244080835 Functional Gain - SLFNL1 ENSG00000171790 CDS Human protein_coding chr1:41483480 chr1:41483484 synonymous SNV . 0 25 hm5C_associated_SNPs_105215 0 0 1 0 0 Endoplasmic reticulum 0.500231884245795 0.50023164389657 0.8693428 0 hm5C_site_58360 DeepMRMD:0.8693428;iRNA_m5C:0 58361 chr19 41903766 41903766 1 + C A rs34541442 41903762 + 41903742 41903782 41 GCGATCGCTGCAGCGAGGGTCTGGCGGCTAAACCGTGGTTT GCGATCGCTGCAGCGAGGGTCTGGAGGCTAAACCGTGGTTT < 41bp 0.397697455199699 0.768408602710124 0.88226104 0.8864641 prediction 0.536817205420248 Functional Gain - BCKDHA ENSG00000248098 CDS Human protein_coding chr19:41903762 chr19:41903766 synonymous SNV . 0 25 hm5C_associated_SNPs_105216 1 0 1 0 1 Cytosol 0.500228330992465 0.500231643710689 0.00840611999999985 6.62543644769364e-06 hm5C_site_58361 DeepMRMD:0.00840611999999985;iRNA_m5C:6.62543644769364e-06 not specified not specified 58362 chr20 62612640 62612640 1 + C G rs186249212 62612636 + 62612616 62612656 41 ACCGTTCCTAGGGATGCCCGCGCCCCTCGGCTACGTGCCGG ACCGTTCCTAGGGATGCCCGCGCCGCTCGGCTACGTGCCGG < 41bp 0.512370965756837 0.780776142457837 0.10243875 0.10061234 prediction 0.536810353402001 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62612636 chr20:62612640 synonymous SNV . 0 25 hm5C_associated_SNPs_105217 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643920935 0 0 hm5C_site_58362 DeepMRMD:0;iRNA_m5C:0 58363 chr17 2278872 2278872 1 + C G rs61739394 2278871 + 2278851 2278891 41 ACCTGAGCAGGAAGCAGGACCCGGGACTCCGGGCACCGCCG ACCTGAGCAGGAAGCAGGACCGGGGACTCCGGGCACCGCCG < 41bp 0.560235230860341 0.828629611356783 0.8891102 0.90489054 prediction 0.536788760992883 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2278871 chr17:2278872 synonymous SNV . 0 22 hm5C_associated_SNPs_105218 0 0 1 0 1 Cytosol 0.500231436844896 0.500231644333348 0.0315606800000001 4.14976902840536e-07 hm5C_site_58363 DeepMRMD:0.0315606800000001;iRNA_m5C:4.14976902840536e-07 58364 chr19 9362622 9362622 1 + C A LUAD 9362618 + 9362598 9362638 41 AGTGATGTACACTGTGGTCACCCCCATGCTGAACCCCTTCA AGTGATGTACACTGTGGTCACCCCAATGCTGAACCCCTTCA < 41bp 0.367572903866142 0.768393011841826 0.015461832 0.15133682 prediction 0.536786023683651 Functional Gain - OR7E24 ENSG00000237521 CDS Human protein_coding chr19:9362618 chr19:9362622 synonymous SNV . 0 25 hm5C_associated_SNPs_105219 0 0 0 0 0 unknown 0.500231717662324 0.500231626205001 0 0 hm5C_site_58364 DeepMRMD:0;iRNA_m5C:0 58365 chr12 52695760 52695760 1 + C G rs201694571 52695759 + 52695739 52695779 41 CTGCATCTCGGCCTGCGGGCCCCGGCCCGGCCGCTGCTGCA CTGCATCTCGGCCTGCGGGCCGCGGCCCGGCCGCTGCTGCA < 41bp 0.452880104933452 0.768389353669571 0.114878714 0.44207537 prediction 0.536778707339141 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695759 chr12:52695760 synonymous SNV . 0 22 hm5C_associated_SNPs_105220 0 0 0 0 1 nucleus 0.500231640227611 0.500231643961234 0 7.46724571065727e-09 hm5C_site_58365 DeepMRMD:0;iRNA_m5C:7.46724571065727e-09 58366 chr10 3189864 3189864 1 + T G UCEC 3189862 + 3189842 3189882 41 GTGCCCAGAGTCAGGAATTCCATTGGCGAGCTCCTGGGCGG GTGCCCAGAGTCAGGAATTCCAGTGGCGAGCTCCTGGGCGG < 41bp 0.601688925041604 0.870074736767221 0.47385752 0.87715125 prediction 0.536771623451234 Functional Gain - PITRM1 ENSG00000107959 CDS Human protein_coding chr10:3189862 chr10:3189864 nonsynonymous SNV 0.015 3 23 hm5C_associated_SNPs_105221 0 0 0 0 0 Endoplasmic reticulum 0.500230338671721 0.500231645997001 0.7543025 2.61465055984011e-06 hm5C_site_58366 DeepMRMD:0.7543025;iRNA_m5C:2.61465055984011e-06 58367 chr18 48256002 48256002 1 + C G rs553427170 48256001 + 48255981 48256021 41 CAGCCCGCCCGCCGACGACCCCGAGCGCCGCTTGTCTGCCT CAGCCCGCCCGCCGACGACCCGGAGCGCCGCTTGTCTGCCT < 41bp 0.469094717134881 0.768378012369298 0.32326218 0.89130723 prediction 0.536756024738595 Functional Gain - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48256001 chr18:48256002 synonymous SNV . 0 22 hm5C_associated_SNPs_105222 0 0 0 0 0 exosome 0.500232352679331 0.500231643567242 0.78261446 0 hm5C_site_58367 DeepMRMD:0.78261446;iRNA_m5C:0 58368 chrX 37027160 37027160 1 + C A LUSC 37027156 + 37027136 37027176 41 GAGTGTCCCATCTCCGCCCACAGCCTCCCAAGACTCAGGTG GAGTGTCCCATCTCCGCCCACAGCATCCCAAGACTCAGGTG < 41bp 0.375209480431473 0.768368514360899 0.31464964 0.4675625 prediction 0.536737028721797 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37027156 chrX:37027160 nonsynonymous SNV 0.007 1 25 hm5C_associated_SNPs_105223 0 0 0 0 0 unknown 0.500231643916894 0.500231643921151 0 8.5140783312454e-12 hm5C_site_58368 DeepMRMD:0;iRNA_m5C:8.5140783312454e-12 58369 chr4 1388970 1388970 1 + C A COAD 1388966 + 1388946 1388986 41 GGAGTGTTCGCCTGCTCACACGTGCCGATGCGGAGTGCCCG GGAGTGTTCGCCTGCTCACACGTGACGATGCGGAGTGCCCG < 41bp 0.614437886187775 0.882806241773712 0.26854497 0.16151321 prediction 0.536736711171874 Functional Gain - CRIPAK ENSG00000179979 CDS Human protein_coding chr4:1388966 chr4:1388970 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_105224 0 0 0 0 0 chromatin 0.500231614688173 0.500231641907988 0 5.44396281387804e-08 hm5C_site_58369 DeepMRMD:0;iRNA_m5C:5.44396281387804e-08 58370 chr1 3672074 3672074 1 + T G SKCM 3672072 + 3672052 3672092 41 GATTGACAACAGCTCGGAGACCTGGAGAGGCACCCAGGACC GATTGACAACAGCTCGGAGACCGGGAGAGGCACCCAGGACC < 41bp 0.42869074401043 0.768344797313405 0.24869063 0.6912251 prediction 0.536689594626811 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3672072 chr1:3672074 nonsynonymous SNV 0.001 1 23 hm5C_associated_SNPs_105225 0 0 0 0 2 exosome 0.500231643921086 0.500231643283022 0.3824502 0 hm5C_site_58370 DeepMRMD:0.3824502;iRNA_m5C:0 58371 chr6 29408057 29408057 1 + C A rs11755182 29408053 + 29408033 29408073 41 CTTCACCACCTCCTTACTGGCCGGCGCCACATCTCTCGCTC CTTCACCACCTCCTTACTGGCCGGAGCCACATCTCTCGCTC < 41bp 0.40607467845966 0.768342193688183 0.36103135 0.4480593 prediction 0.536684387376366 Functional Gain - OR10C1 ENSG00000206474 CDS Human protein_coding chr6:29408053 chr6:29408057 nonsynonymous SNV 0.012 0 25 hm5C_associated_SNPs_105226 0 0 0 0 0 unknown 0.500231643921077 0.500231643921092 0 2.97539770599542e-14 hm5C_site_58371 DeepMRMD:0;iRNA_m5C:2.97539770599542e-14 58372 chr11 94040418 94040418 1 + T A rs200855633 94040414 + 94040394 94040434 41 GAGTGGTGGGAAGACTGTCGCATGTCTTACACATGCAAATC GAGTGGTGGGAAGACTGTCGCATGACTTACACATGCAAATC < 41bp 0.458601675936016 0.768334533237019 0.21111578 0.83745897 prediction 0.536669066474038 Functional Gain - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94040414 chr11:94040418 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_105227 0 0 1 0 1 unknown 0.500231643894411 0.500231643913539 0.67491794 3.82571752055583e-11 hm5C_site_58372 DeepMRMD:0.67491794;iRNA_m5C:3.82571752055583e-11 58373 chr5 7895940 7895940 1 + C G OV 7895939 + 7895919 7895959 41 GGTCCAGGAACCGGCATAGCCCCGTTTATTGGGTTCCTACA GGTCCAGGAACCGGCATAGCCGCGTTTATTGGGTTCCTACA < 41bp 0.544626174318578 0.812952028445257 0.047632635 0.17856684 prediction 0.536651708253358 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7895939 chr5:7895940 nonsynonymous SNV 0.746 5 22 hm5C_associated_SNPs_105228 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921103 0 2.02060590481778e-14 hm5C_site_58373 DeepMRMD:0;iRNA_m5C:2.02060590481778e-14 58374 chr3 140397297 140397297 1 + T A LUAD 140397293 + 140397273 140397313 41 TGCTCTTGGGCCAATGATCCCAACTGTAAGTGCTGCTGCAC TGCTCTTGGGCCAATGATCCCAACAGTAAGTGCTGCTGCAC < 41bp 0.45458781821904 0.768323756388507 0.6792339 0.38674894 prediction 0.536647512777014 Functional Gain - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140397293 chr3:140397297 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_105229 0 0 0 0 0 exosome 0.50023164392114 0.50023164392325 0 4.21951362739037e-12 hm5C_site_58374 DeepMRMD:0;iRNA_m5C:4.21951362739037e-12 58375 chr2 220379549 220379549 1 + C G rs200285513 220379548 + 220379528 220379568 41 AGCCTCCTCGGGGCTGTTGCCCCTGGAGCAGCCCCCCGAGA AGCCTCCTCGGGGCTGTTGCCGCTGGAGCAGCCCCCCGAGA < 41bp 0.452014626311986 0.768321829249484 0.29429406 0.800622 prediction 0.536643658498969 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220379548 chr2:220379549 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_105230 0 0 1 0 0 chromatin 0.500231643922102 0.500231643921092 0.601244 0 hm5C_site_58375 DeepMRMD:0.601244;iRNA_m5C:0 58376 chr14 102606387 102606387 1 + C A LUSC 102606383 + 102606363 102606403 41 CCCAACCGGGTGCCCTTCAACTCGCAGGGATCCAACCCTGT CCCAACCGGGTGCCCTTCAACTCGAAGGGATCCAACCCTGT < 41bp 0.648855118538145 0.917166915677913 0.24641702 0.89489657 prediction 0.536623594279536 Functional Gain - WDR20 ENSG00000140153 CDS Human protein_coding chr14:102606383 chr14:102606387 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_105231 0 0 1 0 0 Cytosol 0.500231643920964 0.500231643921011 0.78979314 9.43689570931383e-14 hm5C_site_58376 DeepMRMD:0.78979314;iRNA_m5C:9.43689570931383e-14 58377 chr12 103353525 103353525 1 + T A rs1391682 103353521 + 103353501 103353541 41 TCTTGCTCGGGTCCCTTCACCTCCTCGCCCTTTCTTAAAGT TCTTGCTCGGGTCCCTTCACCTCCACGCCCTTTCTTAAAGT < 41bp 0.442290330998853 0.768310945195097 0.06859934 0.9467286 prediction 0.536621890390194 Functional Gain - ASCL1 ENSG00000139352 UTR3 Human protein_coding chr12:103353521 chr12:103353525 . . 0 25 hm5C_associated_SNPs_105232 0 0 0 0 0 Cytosol 0.500231643924318 0.500231643910553 0.8934572 0 hm5C_site_58377 DeepMRMD:0.8934572;iRNA_m5C:0 58378 chr22 49145928 49145928 1 + C A rs131959 49145924 + 49145904 49145944 41 AGTCTGTGGGAGCCCGGCCGCGCCCAGCCCCCGCCGACCGT AGTCTGTGGGAGCCCGGCCGCGCCAAGCCCCCGCCGACCGT < 41bp 0.640649992617558 0.90896073796645 0.0805625 0.21631113 prediction 0.536621490697783 Functional Gain - FAM19A5 ENSG00000219438 UTR3 Human protein_coding chr22:49145924 chr22:49145928 . . 0 25 hm5C_associated_SNPs_105233 0 0 1 0 0 membrane 0.500231644232997 0.500231643921093 0 0 hm5C_site_58378 DeepMRMD:0;iRNA_m5C:0 58379 chr12 94243772 94243772 1 + C A GBM 94243768 + 94243748 94243788 41 GACAGATTGACTGGGATCCCCTCGCACATCCTCAACAGCTC GACAGATTGACTGGGATCCCCTCGAACATCCTCAACAGCTC < 41bp 0.370996217618262 0.768296840413854 0.39546347 0.9228593 prediction 0.536593680827708 Functional Gain - CRADD ENSG00000169372 CDS Human protein_coding chr12:94243768 chr12:94243772 nonsynonymous SNV 0.096 1 25 hm5C_associated_SNPs_105234 0 0 0 0 1 Ribosome 0.500231638888389 0.500231644318037 0.8457186 1.0859297461252e-08 hm5C_site_58379 DeepMRMD:0.8457186;iRNA_m5C:1.0859297461252e-08 58380 chrX 51638241 51638241 1 + C G UCEC 51638240 + 51638220 51638260 41 TCCACCTACTAACCAGGCCACCGCAGCTGCTAGTCCCCAGA TCCACCTACTAACCAGGCCACGGCAGCTGCTAGTCCCCAGA < 41bp 0.577921947111336 0.846213974533462 0.31970063 0.31490314 prediction 0.536584054844252 Functional Gain - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51638240 chrX:51638241 synonymous SNV . 0 22 hm5C_associated_SNPs_105235 0 0 1 0 1 chromatin 0.500231681526656 0.5002324476593 0 1.53226528709638e-06 hm5C_site_58380 DeepMRMD:0;iRNA_m5C:1.53226528709638e-06 58381 chr4 134072817 134072817 1 + C G HNSC 134072816 + 134072796 134072836 41 TCTATCCTCGAGTGCCAGATCCAGGGCATGAGCGTCTTCAC TCTATCCTCGAGTGCCAGATCGAGGGCATGAGCGTCTTCAC < 41bp 0.571089767904374 0.839379046669888 0.94101727 0.9515933 prediction 0.536578557531029 Functional Gain - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134072816 chr4:134072817 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_105236 0 0 0 0 0 cytosol 0.500231643898855 0.500231643921093 0.0211520599999999 4.44746461880641e-11 hm5C_site_58381 DeepMRMD:0.0211520599999999;iRNA_m5C:4.44746461880641e-11 58382 chr15 91485730 91485730 1 + C G rs115978927 91485729 + 91485709 91485749 41 TCCATCCTGGGCGTGGAAAGCCAGGCTGTGTCCCTGGCTGC TCCATCCTGGGCGTGGAAAGCGAGGCTGTGTCCCTGGCTGC < 41bp 0.575962551748222 0.844241779146248 0.8988744 0.929211 prediction 0.536558454796052 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91485729 chr15:91485730 nonsynonymous SNV 0.988 0 22 hm5C_associated_SNPs_105237 0 0 1 0 1 Nucleus 0.500231653438278 0.500231643921136 0.0606732000000001 0 hm5C_site_58382 DeepMRMD:0.0606732000000001;iRNA_m5C:0 58383 chr14 23080487 23080487 1 + C A rs112626821 23080483 + 23080463 23080503 41 AGCTCTGTGTGATTCAAGTTCTGGCAGAGCTTGTAAGGCTA AGCTCTGTGTGATTCAAGTTCTGGAAGAGCTTGTAAGGCTA < 41bp 0.627255848622631 0.895528936865134 0.20650774 0.27824795 prediction 0.536546176485007 Functional Gain - ABHD4 ENSG00000100439 UTR3 Human protein_coding chr14:23080483 chr14:23080487 . . 0 25 hm5C_associated_SNPs_105238 0 0 1 0 0 cytosol 0.500238047951863 0.50023168643811 0 0 hm5C_site_58383 DeepMRMD:0;iRNA_m5C:0 58384 chr19 36033899 36033899 1 + G T TGCT 36033903 - 36033883 36033923 41 ACCCTTCCACGATCCCAAATCGCTCGTGGATGACTTTGGCG ACCCTTCCACGATCCCAAATCGCTAGTGGATGACTTTGGCG < 41bp 0.351725509054662 0.768266132854329 0.10886425 0.12319079 prediction 0.536532265708657 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033903 chr19:36033899 stopgain 0.616 1 25 hm5C_associated_SNPs_105239 0 0 1 0 1 chromatin 0.500231643921064 0.500231643921092 0 5.75095526755831e-14 hm5C_site_58384 DeepMRMD:0;iRNA_m5C:5.75095526755831e-14 58385 chr12 123741776 123741776 1 + T A rs1969354 123741772 + 123741752 123741792 41 CACGATTCAAGAATAAAACTCGGCTGGGCACGGTGGACGGT CACGATTCAAGAATAAAACTCGGCAGGGCACGGTGGACGGT < 41bp 0.480704698776626 0.768262838909771 0.62212425 0.7360733 prediction 0.536525677819541 Functional Gain - C12orf65 ENSG00000235423 ncRNA_intronic Human antisense chr12:123741772 chr12:123741776 . . 0 25 hm5C_associated_SNPs_105240 0 0 1 0 0 Cytosol 0.500231643962856 0.500231644617924 0.2278981 1.31013688786652e-09 hm5C_site_58385 DeepMRMD:0.2278981;iRNA_m5C:1.31013688786652e-09 58386 chr12 69202015 69202015 1 + T G rs3730492 69202012 + 69201992 69202032 41 CTTCTGGGGCCTGTGTGGCCCTGTGTGTCGGAAAGATGGAG CTTCTGGGGCCTGTGTGGCCCTGGGTGTCGGAAAGATGGAG < 41bp 0.530139339582502 0.798400506844613 0.18517593 0.41289282 prediction 0.536522334524222 Functional Gain - MDM2 ENSG00000135679 UTR5 Human protein_coding chr12:69202012 chr12:69202015 . . 0 24 hm5C_associated_SNPs_105241 0 0 1 0 0 Cytosol 0.500231643921072 0.500231643883638 0 0 hm5C_site_58386 DeepMRMD:0;iRNA_m5C:0 58387 chr20 3730722 3730722 1 + C A UCEC 3730718 + 3730698 3730738 41 CTTCAAAAGGCAACGGCCGGCAGCCTGGGTAGATCTGACCA CTTCAAAAGGCAACGGCCGGCAGCATGGGTAGATCTGACCA < 41bp 0.349571254625071 0.768256672703568 0.39018682 0.59497607 prediction 0.536513345407135 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3730718 chr20:3730722 synonymous SNV . 0 25 hm5C_associated_SNPs_105242 0 0 0 0 0 exosome 0.500231643921092 0.50023164380989 0.18995214 0 hm5C_site_58387 DeepMRMD:0.18995214;iRNA_m5C:0 58388 chr1 228033845 228033845 1 + C A UCEC 228033841 + 228033821 228033861 41 CTGCTCAGCCAGCCCCTGCTCTCTCTCCAGCTCTGGGGCCC CTGCTCAGCCAGCCCCTGCTCTCTATCCAGCTCTGGGGCCC < 41bp 0.366592465424454 0.768255600693409 0.10004136 0.90840596 prediction 0.536511201386819 Functional Gain - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228033841 chr1:228033845 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_105243 0 0 0 0 0 unknown 0.500226485318265 0.500231643921092 0.81681192 1.03172056558076e-05 hm5C_site_58388 DeepMRMD:0.81681192;iRNA_m5C:1.03172056558076e-05 58389 chr15 67786628 67786628 1 + T C UCEC 67786626 + 67786606 67786646 41 GAGGATCTCCAGGGGGTCCTCATGACCTTTGCTCGCCATCT GAGGATCTCCAGGGGGTCCTCACGACCTTTGCTCGCCATCT < 41bp 0.490250792177244 0.76823926933014 0.19481659 0.27871382 prediction 0.536478538660281 Functional Gain - IQCH ENSG00000103599 CDS Human protein_coding chr15:67786626 chr15:67786628 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_105244 0 0 0 0 2 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_58389 DeepMRMD:0;iRNA_m5C:0 58390 chr7 6187447 6187447 1 + T G UCEC 6187445 + 6187425 6187465 41 CAGTCCTCTCCCCGCCCCGTCATCAGTCAGCGGGTTGTCAC CAGTCCTCTCCCCGCCCCGTCAGCAGTCAGCGGGTTGTCAC < 41bp 0.415215111165751 0.768234322140579 0.018135816 0.053934723 prediction 0.536468644281158 Functional Gain - USP42 ENSG00000106346 CDS Human protein_coding chr7:6187445 chr7:6187447 nonsynonymous SNV 0.827 0 23 hm5C_associated_SNPs_105245 0 0 1 0 2 Ribosome 0.500231097669609 0.500231769752735 0 1.34416625141576e-06 hm5C_site_58390 DeepMRMD:0;iRNA_m5C:1.34416625141576e-06 58391 chr8 11189250 11189250 1 + C A COAD 11189246 + 11189226 11189266 41 CCCTGGGGCTTCTGGTCTATCGTTCTCTGCACTTTCCCTCC CCCTGGGGCTTCTGGTCTATCGTTATCTGCACTTTCCCTCC < 41bp 0.367856018179591 0.768233018178843 0.1285376 0.09807402 prediction 0.536466036357687 Functional Gain - SLC35G5 ENSG00000177710 CDS Human protein_coding chr8:11189246 chr8:11189250 nonsynonymous SNV 0.093 4 25 hm5C_associated_SNPs_105246 0 0 0 0 0 exosome 0.500231643898206 0.500231643921093 0 4.57749393945051e-11 hm5C_site_58391 DeepMRMD:0;iRNA_m5C:4.57749393945051e-11 58392 chr3 57542860 57542860 1 + C A MESO 57542856 + 57542836 57542876 41 CTAAGGCTCAAGCTTCACTGCACCCCAGGCGATGGGCAGCG CTAAGGCTCAAGCTTCACTGCACCACAGGCGATGGGCAGCG < 41bp 0.346866783215377 0.768231112136515 0.02116403 0.015122116 prediction 0.53646222427303 Functional Gain - PDE12 ENSG00000174840 CDS Human protein_coding chr3:57542856 chr3:57542860 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105247 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231644395256 0 9.48326306371428e-10 hm5C_site_58392 DeepMRMD:0;iRNA_m5C:9.48326306371428e-10 58393 chr19 50905129 50905129 1 + C G BLCA 50905125 + 50905105 50905145 41 GGTCACCGATGAGGGGTTCTCTGTCTGCTGCCACATCCACG GGTCACCGATGAGGGGTTCTCTGTGTGCTGCCACATCCACG < 41bp 0.532347961446868 0.800576574737381 0.18431386 0.3436668 prediction 0.536457226581024 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50905125 chr19:50905129 synonymous SNV . 0 25 hm5C_associated_SNPs_105248 0 0 1 0 2 Nucleus 0.500231643921079 0.500231643960252 0 7.83451081787234e-11 hm5C_site_58393 DeepMRMD:0;iRNA_m5C:7.83451081787234e-11 58394 chr1 15541674 15541674 1 + T A LIHC 15541670 + 15541650 15541690 41 GTCCTTGGGGTGATCATGGCCATGTGGAACCTGGTACCCGG GTCCTTGGGGTGATCATGGCCATGAGGAACCTGGTACCCGG < 41bp 0.561566737635993 0.829794427816765 0.37334192 0.31620532 prediction 0.536455380361544 Functional Gain - TMEM51 ENSG00000171729 CDS Human protein_coding chr1:15541670 chr1:15541674 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_105249 0 0 1 0 0 cytosol 0.500231643899218 0.500231643904406 0 1.03757002989369e-11 hm5C_site_58394 DeepMRMD:0;iRNA_m5C:1.03757002989369e-11 58395 chr9 125281507 125281507 1 + C A ESCA 125281503 + 125281483 125281523 41 GAGCAGCAGGCTGTGTTCTTCACCCTGTTCTTGGGCATGTA GAGCAGCAGGCTGTGTTCTTCACCATGTTCTTGGGCATGTA < 41bp 0.633752092105927 0.901975320648202 0.15268475 0.2083166 prediction 0.53644645708455 Functional Gain - OR1J4 ENSG00000239590 CDS Human protein_coding chr9:125281503 chr9:125281507 nonsynonymous SNV 0.027 1 25 hm5C_associated_SNPs_105250 0 0 0 0 0 exosome 0.50023164392109 0.500232165733584 0 1.0436249862078e-06 hm5C_site_58395 DeepMRMD:0;iRNA_m5C:1.0436249862078e-06 58396 chr14 102276303 102276303 1 + C G rs200109462 102276299 + 102276279 102276319 41 GATGTTGACATGTAATAAAGCGGGCAGCAGGATGGTGGTGG GATGTTGACATGTAATAAAGCGGGGAGCAGGATGGTGGTGG < 41bp 0.516612523155698 0.784829754311105 0.75735235 0.91786593 prediction 0.536434462310815 Functional Gain - PPP2R5C ENSG00000078304 CDS Human protein_coding chr14:102276299 chr14:102276303 synonymous SNV . 0 25 hm5C_associated_SNPs_105251 0 0 1 0 1 Cytosol 0.500231643921105 0.500231643921092 0.32102716 0 hm5C_site_58396 DeepMRMD:0.32102716;iRNA_m5C:0 58397 chr9 34489407 34489407 1 + T A GBM 34489403 + 34489383 34489423 41 GAACCTGATCCCCAAAGACTCAGATGAAGGACGGCGGCAGC GAACCTGATCCCCAAAGACTCAGAAGAAGGACGGCGGCAGC < 41bp 0.578268912351029 0.846479851929904 0.81350595 0.53387624 prediction 0.536421879157751 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34489403 chr9:34489407 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_105252 0 0 0 0 2 unknown 0.500231567252493 0.500231643923402 0 1.53341817465957e-07 hm5C_site_58397 DeepMRMD:0;iRNA_m5C:1.53341817465957e-07 58398 chr22 46685754 46685754 1 + C G rs182313981 46685750 + 46685730 46685770 41 TCTTCAACCAGCTGCTGATTCACGCGGCCTTAAACTGCACC TCTTCAACCAGCTGCTGATTCACGGGGCCTTAAACTGCACC < 41bp 0.528612145563492 0.796820610235107 0.4968623 0.8826825 prediction 0.53641692934323 Functional Gain - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46685750 chr22:46685754 nonsynonymous SNV 0.293 2 25 hm5C_associated_SNPs_105253 0 0 0 0 2 Ribosome 0.500231634571801 0.500231643925538 0.765365 1.87074737922899e-08 hm5C_site_58398 DeepMRMD:0.765365;iRNA_m5C:1.87074737922899e-08 58399 chr11 60692049 60692049 1 + C G rs559735404 60692048 + 60692028 60692068 41 CGGAGCGGGTGCGGGAGATGCCGTGCGGGACTGGGGCCACC CGGAGCGGGTGCGGGAGATGCGGTGCGGGACTGGGGCCACC < 41bp 0.548476731741778 0.816677946596608 0.8633364 0.89625114 prediction 0.536402429709659 Functional Gain - TMEM132A ENSG00000256196 ncRNA_intronic Human antisense chr11:60692048 chr11:60692049 . . 0 22 hm5C_associated_SNPs_105254 0 0 1 0 0 Ribosome 0.500231644050839 0.500231643921081 0.0658294799999999 0 hm5C_site_58399 DeepMRMD:0.0658294799999999;iRNA_m5C:0 58400 chr5 140515685 140515685 1 + C G LUSC 140515684 + 140515664 140515704 41 CGGTGGGGCTCCGCCCAGGTCCGGGACCACCACAATTCGCA CGGTGGGGCTCCGCCCAGGTCGGGGACCACCACAATTCGCA < 41bp 0.562612011878359 0.830809491267962 0.12348279 0.6601136 prediction 0.536394958779206 Functional Gain - PCDHB5 ENSG00000113209 CDS Human protein_coding chr5:140515684 chr5:140515685 synonymous SNV . 0 22 hm5C_associated_SNPs_105255 0 0 0 0 0 Endoplasmic reticulum 0.500231643871245 0.500231643921091 0.3202272 9.96918103624012e-11 hm5C_site_58400 DeepMRMD:0.3202272;iRNA_m5C:9.96918103624012e-11 58401 chr17 20347224 20347224 1 + C G rs549067966 20347223 + 20347203 20347243 41 CCAAATGAGGACCACATCTACCAGGAGGAGATGCTGGAGAT CCAAATGAGGACCACATCTACGAGGAGGAGATGCTGGAGAT < 41bp 0.530838099024236 0.799035344012901 0.17417842 0.8682752 prediction 0.53639448997733 Functional Gain - NOS2P3 ENSG00000230528 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:20347223 chr17:20347224 . . 0 22 hm5C_associated_SNPs_105256 0 0 0 0 2 unknown 0.500231643921067 0.500231643921037 0.7365504 0 hm5C_site_58401 DeepMRMD:0.7365504;iRNA_m5C:0 58402 chr16 1815986 1815986 1 + C G rs200111591 1815982 + 1815962 1816002 41 GGCCAGCGACAGCGACTACCCTCCCGGGGAGATGTTCCTGG GGCCAGCGACAGCGACTACCCTCCGGGGGAGATGTTCCTGG < 41bp 0.515830301987313 0.784027017598861 0.17058876 0.39195445 prediction 0.536393431223096 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1815982 chr16:1815986 synonymous SNV . 0 25 hm5C_associated_SNPs_105257 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_58402 DeepMRMD:0;iRNA_m5C:0 58403 chr12 81102631 81102631 1 + T A SKCM 81102627 + 81102607 81102647 41 GTTTTTTCGCTCAGGAGGAGCAAGTATTGATTCGTCAGCCT GTTTTTTCGCTCAGGAGGAGCAAGAATTGATTCGTCAGCCT < 41bp 0.547716838801486 0.815902142834284 0.8935416 0.8487752 prediction 0.536370608065596 Functional Gain - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81102627 chr12:81102631 nonsynonymous SNV 0.008 1 25 hm5C_associated_SNPs_105258 0 0 0 0 1 unknown 0.500231643956808 0.500231642990633 0 0 hm5C_site_58403 DeepMRMD:0;iRNA_m5C:0 58404 chr17 30621407 30621407 1 + C A SARC 30621403 + 30621383 30621423 41 TGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAG TGAAGAACTCCCTGGTTTACCACCAACAGCTGCGAGCACAG < 41bp 0.329565603151543 0.768177467691019 0.045082778 0.24257836 prediction 0.536354935382039 Functional Gain - RHBDL3 ENSG00000141314 CDS Human protein_coding chr17:30621403 chr17:30621407 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105259 0 0 0 0 1 cytosol 0.500231538970368 0.500231701128441 0 3.24316145938752e-07 hm5C_site_58404 DeepMRMD:0;iRNA_m5C:3.24316145938752e-07 58405 chr9 17793437 17793437 1 + T A LIHC 17793433 + 17793413 17793453 41 ACGAATGAGCCTGGAGTTTCCAACTGGAGACAGTACTCAGC ACGAATGAGCCTGGAGTTTCCAACAGGAGACAGTACTCAGC < 41bp 0.58041683920867 0.84859198748993 0.16159165 0.23647255 prediction 0.536350296562518 Functional Gain - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17793433 chr9:17793437 synonymous SNV . 0 25 hm5C_associated_SNPs_105260 0 0 0 0 2 nucleus 0.500231643860371 0.500231643221219 0 0 hm5C_site_58405 DeepMRMD:0;iRNA_m5C:0 58406 chr22 19119640 19119640 1 + G T rs143115966 19119644 - 19119624 19119664 41 CGGTAGATGAGGTCCTTGCACTCGCAGGTCAGGTTCTTGGA CGGTAGATGAGGTCCTTGCACTCGAAGGTCAGGTTCTTGGA < 41bp 0.636414247529856 0.904585816874238 0.061957836 0.19660094 prediction 0.536343138688765 Functional Gain - TSSK2 ENSG00000206203 CDS Human protein_coding chr22:19119644 chr22:19119640 nonsynonymous SNV 0.613 0 25 hm5C_associated_SNPs_105261 0 0 1 0 0 exosome 0.500231643931084 0.500231643912986 0 0 hm5C_site_58406 DeepMRMD:0;iRNA_m5C:0 58407 chrX 135741371 135741371 1 + C G STAD 135741367 + 135741347 135741387 41 GCTCCATTTATAGCCAGCCTCTGCCTAAAGTCCCCCGGTAG GCTCCATTTATAGCCAGCCTCTGCGTAAAGTCCCCCGGTAG < 41bp 0.523517686297727 0.791678340912605 0.14669618 0.26397353 prediction 0.536321309229756 Functional Gain - CD40LG ENSG00000102245 CDS Human protein_coding chrX:135741367 chrX:135741371 nonsynonymous SNV 0.467 5 25 hm5C_associated_SNPs_105262 0 0 0 0 0 exosome 0.500231678514418 0.500231641263318 0 0 hm5C_site_58407 DeepMRMD:0;iRNA_m5C:0 58408 chr19 42728829 42728829 1 + C G rs201702024 42728825 + 42728805 42728845 41 TCAGAGGAGGAGGCACTGACCACACAGAATGTTGGCCTGGA TCAGAGGAGGAGGCACTGACCACAGAGAATGTTGGCCTGGA < 41bp 0.512758424827171 0.780875885524654 0.13366267 0.3587734 prediction 0.536234921394966 Functional Gain - ZNF526 ENSG00000167625 CDS Human protein_coding chr19:42728825 chr19:42728829 nonsynonymous SNV 0.832 0 25 hm5C_associated_SNPs_105263 0 0 1 0 0 Cytosol 0.500231643938238 0.500231643611964 0 0 hm5C_site_58408 DeepMRMD:0;iRNA_m5C:0 58409 chrX 114425015 114425015 1 + C A SARC 114425011 + 114424991 114425031 41 CGAGGAGTACCAGGGCAACTCGCCCGATGCCTGCAGTGAAG CGAGGAGTACCAGGGCAACTCGCCAGATGCCTGCAGTGAAG < 41bp 0.643262752280622 0.911378405505323 0.6133417 0.9327724 prediction 0.536231306449403 Functional Gain - RBMXL3 ENSG00000175718 CDS Human protein_coding chrX:114425011 chrX:114425015 synonymous SNV . 0 25 hm5C_associated_SNPs_105264 0 0 0 0 0 exosome 0.500188410322681 0.500231643243069 0.6388614 8.64658407759844e-05 hm5C_site_58409 DeepMRMD:0.6388614;iRNA_m5C:8.64658407759844e-05 58410 chr17 61895495 61895495 1 + C G LUAD 61895491 + 61895471 61895511 41 TACCGCCATCCAGAAAGCAGCAGCCGTCATACTGATGGCCA TACCGCCATCCAGAAAGCAGCAGCGGTCATACTGATGGCCA < 41bp 0.525173140994636 0.793265633746841 0.22798643 0.3859787 prediction 0.536184985504409 Functional Gain - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61895491 chr17:61895495 nonsynonymous SNV 0.984 3 25 hm5C_associated_SNPs_105265 0 0 1 0 0 chromatin 0.500231667201693 0.500231645083758 0 0 hm5C_site_58410 DeepMRMD:0;iRNA_m5C:0 58411 chr3 38080913 38080913 1 + T A LUAD 38080909 + 38080889 38080929 41 GCTTCGCAGCCCGGCCCCGCCGCCTCACGCAGCTTGCGCTG GCTTCGCAGCCCGGCCCCGCCGCCACACGCAGCTTGCGCTG < 41bp 0.560186438900161 0.828274400614199 0.06743103 0.92772186 prediction 0.536175923428077 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38080909 chr3:38080913 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_105266 0 0 0 0 0 chromatin 0.500231643921091 0.500231643921087 0.85544372 0 hm5C_site_58411 DeepMRMD:0.85544372;iRNA_m5C:0 58412 chr1 171178027 171178027 1 + T A LIHC 171178023 + 171178003 171178043 41 ATAGGTGCGAAGCCAGATTTCTGCTCTCTCTTGTTCAAAGA ATAGGTGCGAAGCCAGATTTCTGCACTCTCTTGTTCAAAGA < 41bp 0.579535868522478 0.847619414881503 0.18185988 0.17941138 prediction 0.536167092718049 Functional Gain - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171178023 chr1:171178027 nonsynonymous SNV 0.030 0 25 hm5C_associated_SNPs_105267 0 0 0 0 1 exosome 0.500231643894539 0.50023164389707 0 5.06372721531534e-12 hm5C_site_58412 DeepMRMD:0;iRNA_m5C:5.06372721531534e-12 58413 chrX 38280311 38280311 1 + T A UCEC 38280307 + 38280287 38280327 41 GTCCCTGCTGACAGATTACTCACCTCAGCTCCAGAAGCCTA GTCCCTGCTGACAGATTACTCACCACAGCTCCAGAAGCCTA < 41bp 0.581947576693756 0.85002296105121 0.0809201 0.044068873 prediction 0.536150768714909 Functional Gain - OTC ENSG00000036473 CDS Human protein_coding chrX:38280307 chrX:38280311 synonymous SNV . 0 25 hm5C_associated_SNPs_105268 0 0 0 0 1 exosome 0.500231625282618 0.500231631198463 0 1.18316911823513e-08 hm5C_site_58413 DeepMRMD:0;iRNA_m5C:1.18316911823513e-08 58414 chr16 68564188 68564188 1 + C G rs541075295 68564187 + 68564167 68564207 41 ACTAGCCTGCCGCTTCCCTCCCGGCACCCCCGCCGCCAGCC ACTAGCCTGCCGCTTCCCTCCGGGCACCCCCGCCGCCAGCC < 41bp 0.541953281099944 0.810022842105866 0.3955959 0.9074399 prediction 0.536139122011845 Functional Gain - SMPD3;ZFP90 ENSG00000184939 UTR5 Human protein_coding chr16:68564187 chr16:68564188 . . 0 22 hm5C_associated_SNPs_105269 0 0 0 0 0 unknown 0.500231633158129 0.500231643901843 0.8148798 2.14874269488519e-08 hm5C_site_58414 DeepMRMD:0.8148798;iRNA_m5C:2.14874269488519e-08 58415 chr5 148730709 148730709 1 + T G UCEC 148730707 + 148730687 148730727 41 GACCCCCATGAGCATGAACTCATCTGTCATGTGCCAGCTGG GACCCCCATGAGCATGAACTCAGCTGTCATGTGCCAGCTGG < 41bp 0.454997538227284 0.768060596249832 0.28507468 0.69416535 prediction 0.536121192499663 Functional Gain - GRPEL2 ENSG00000164284 CDS Human protein_coding chr5:148730707 chr5:148730709 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_105270 0 0 1 0 0 Cytosol 0.50023164357162 0.500231643923666 0.3883307 7.04091673853213e-10 hm5C_site_58415 DeepMRMD:0.3883307;iRNA_m5C:7.04091673853213e-10 58416 chr2 73901983 73901983 1 + C G LUAD 73901982 + 73901962 73902002 41 TCCTTAGTCTTCCTGGCTGTCCAGAAGAACAAGCCTATCAG TCCTTAGTCTTCCTGGCTGTCGAGAAGAACAAGCCTATCAG < 41bp 0.557054398902678 0.825112266917537 0.66857374 0.8989636 prediction 0.536115736029717 Functional Gain - ALMS1P1 ENSG00000163016 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:73901982 chr2:73901983 . . 0 22 hm5C_associated_SNPs_105271 0 0 0 0 2 unknown 0.500231643920378 0.500231643920857 0.46077972 9.5856655946136e-13 hm5C_site_58416 DeepMRMD:0.46077972;iRNA_m5C:9.5856655946136e-13 58417 chr2 108999891 108999891 1 + T C UCEC 108999889 + 108999869 108999909 41 CAGTGTGCTGGGGCTCCTGGCATGAACATGTGAAAGGATGG CAGTGTGCTGGGGCTCCTGGCACGAACATGTGAAAGGATGG < 41bp 0.513404639767404 0.781448721679347 0.113082826 0.07813379 prediction 0.536088163823886 Functional Gain - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108999889 chr2:108999891 synonymous SNV . 0 23 hm5C_associated_SNPs_105272 0 0 0 0 1 exosome 0.500231647589749 0.500231646051744 0 0 hm5C_site_58417 DeepMRMD:0;iRNA_m5C:0 58418 chr1 201489272 201489272 1 + C G UCEC 201489271 + 201489251 201489291 41 CCAAGAAGGATGTCCACATGCCTAAGCACCCGGAGCTGGCA CCAAGAAGGATGTCCACATGCGTAAGCACCCGGAGCTGGCA < 41bp 0.472306852305532 0.768042357817681 0.06307024 0.25297683 prediction 0.536084715635362 Functional Gain - RPS10P7 ENSG00000223396;ENSG00000242150 ncRNA_exonic Human other chr1:201489271 chr1:201489272 . . 0 22 hm5C_associated_SNPs_105273 0 0 0 1 0 unknown 0.500231476130906 0.500231644716809 0 3.37171806252812e-07 hm5C_site_58418 DeepMRMD:0;iRNA_m5C:3.37171806252812e-07 58419 chr2 1546277 1546277 1 + T A BLCA 1546273 + 1546253 1546293 41 AGTGGCAGGACACTGCAGAACAGCTTCATGTTCCCAAAATC AGTGGCAGGACACTGCAGAACAGCATCATGTTCCCAAAATC < 41bp 0.547789311015946 0.815817637379821 0.3675893 0.3610999 prediction 0.53605665272775 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1546273 chr2:1546277 synonymous SNV . 0 25 hm5C_associated_SNPs_105274 0 0 0 0 1 exosome 0.500231643926233 0.500231644092148 0 3.31830785071929e-10 hm5C_site_58419 DeepMRMD:0;iRNA_m5C:3.31830785071929e-10 58420 chr1 24681126 24681126 1 + C A rs74060303 24681122 + 24681102 24681142 41 GCCCTTGAGTCACAGACCCACAGACGTCAGGGCCAGGGAGA GCCCTTGAGTCACAGACCCACAGAAGTCAGGGCCAGGGAGA < 41bp 0.405706236310249 0.767996244974353 0.59943146 0.46637043 prediction 0.535992489948705 Functional Gain - GRHL3 ENSG00000158055 UTR3 Human protein_coding chr1:24681122 chr1:24681126 . . 0 25 hm5C_associated_SNPs_105275 0 0 0 0 0 Nucleus 0.500267951323067 0.500233845914231 0 0 hm5C_site_58420 DeepMRMD:0;iRNA_m5C:0 58421 chr6 26384080 26384080 1 + C A UCEC 26384076 + 26384056 26384096 41 CCAGCTGCTGCTCTGCACTTCTCCCTGCCAGCCTCCCTCCT CCAGCTGCTGCTCTGCACTTCTCCATGCCAGCCTCCCTCCT < 41bp 0.342844728172504 0.767981445991079 0.4201225 0.96744347 prediction 0.535962891982157 Functional Gain - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26384076 chr6:26384080 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_105276 0 0 0 0 2 Endoplasmic reticulum 0.500231643921403 0.500231643921093 0.93488694 0 hm5C_site_58421 DeepMRMD:0.93488694;iRNA_m5C:0 58422 chr4 129035873 129035873 1 + T C SKCM 129035871 + 129035851 129035891 41 GGATAGAAGTTAAAAAAAGACATCAGCCAGCCCCAGTGAAA GGATAGAAGTTAAAAAAAGACACCAGCCAGCCCCAGTGAAA < 41bp 0.503669154321041 0.771636090580549 0.0856888 0.085008115 prediction 0.535933872519016 Functional Gain - LARP1B ENSG00000138709 CDS Human protein_coding chr4:129035871 chr4:129035873 synonymous SNV . 0 23 hm5C_associated_SNPs_105277 0 0 1 0 0 Nucleus 0.500231643922185 0.500231643881577 0 0 hm5C_site_58422 DeepMRMD:0;iRNA_m5C:0 58423 chr11 1999130 1999130 1 + C G rs217722 1999129 + 1999109 1999149 41 CTGGCTCTCTGGGAGGGGTTCCAGGCCTCCAGCCTCCCTGT CTGGCTCTCTGGGAGGGGTTCGAGGCCTCCAGCCTCCCTGT < 41bp 0.539230474858575 0.80718308830451 0.7054429 0.9298061 prediction 0.535905226891871 Functional Gain - MRPL23;MRPL23-AS1 ENSG00000214026 intronic Human protein_coding chr11:1999129 chr11:1999130 . . 0 22 hm5C_associated_SNPs_105278 0 0 0 0 0 unknown 0.500231643923586 0.500231643921092 0.4487264 0 hm5C_site_58423 DeepMRMD:0.4487264;iRNA_m5C:0 58424 chr11 45746051 45746051 1 + C A rs61884974 45746047 + 45746027 45746067 41 ACTGAGACCAGGGCTTGATCCTGGCCCCCTTGGCCTCCCTG ACTGAGACCAGGGCTTGATCCTGGACCCCTTGGCCTCCCTG < 41bp 0.630056581546542 0.897999866417716 0.7723901 0.8581402 prediction 0.535886569742349 Functional Gain - LOC100507384 ENSG00000254519 ncRNA_exonic Human processed_transcript chr11:45746047 chr11:45746051 . . 0 25 hm5C_associated_SNPs_105279 0 0 0 0 0 unknown 0.500231639880931 0.500231643674223 0.1715002 7.58658380561883e-09 hm5C_site_58424 DeepMRMD:0.1715002;iRNA_m5C:7.58658380561883e-09 58425 chr12 57619424 57619424 1 + T C LIHC 57619422 + 57619402 57619442 41 GCCTGGCTCTGTGCCAAGCCCTTCAAAGTCATCTGTATCTT GCCTGGCTCTGTGCCAAGCCCTCCAAAGTCATCTGTATCTT < 41bp 0.489927377172734 0.767942368028649 0.3339954 0.96464884 prediction 0.535884736057299 Functional Gain - NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619422 chr12:57619424 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105280 0 0 1 0 0 exosome 0.500231643921085 0.500231643921206 0.92929768 2.42916797787984e-13 hm5C_site_58425 DeepMRMD:0.92929768;iRNA_m5C:2.42916797787984e-13 58426 chr6 28251868 28251868 1 + T C LUSC 28251866 + 28251846 28251886 41 CTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCCAAGGA CTGCTGGTGCTGGAGCAGTTCCCGACCATCCTGCCCAAGGA < 41bp 0.491946779378907 0.767929316170195 0.12279108 0.12656596 prediction 0.53585863234039 Functional Gain - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28251866 chr6:28251868 nonsynonymous SNV 0.772 3 23 hm5C_associated_SNPs_105281 0 0 1 0 0 nucleoplasm 0.500232365183654 0.500231643929317 0 0 hm5C_site_58426 DeepMRMD:0;iRNA_m5C:0 58427 chr5 126145907 126145907 1 + C A UCEC 126145903 + 126145883 126145923 41 GACCAGAAGGAAGCATGAAACGCGCTTGGTAGAGGTGGATT GACCAGAAGGAAGCATGAAACGCGATTGGTAGAGGTGGATT < 41bp 0.646562960997634 0.914484291046551 0.406878 0.41572806 prediction 0.535842660097834 Functional Gain - LMNB1 ENSG00000113368 CDS Human protein_coding chr5:126145903 chr5:126145907 synonymous SNV . 0 25 hm5C_associated_SNPs_105282 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58427 DeepMRMD:0;iRNA_m5C:0 58428 chr11 60198329 60198329 1 + T A LUAD 60198325 + 60198305 60198345 41 TTTGGAGTTATCTTCCTTTTCACCTTGTTAAAACCATATCC TTTGGAGTTATCTTCCTTTTCACCATGTTAAAACCATATCC < 41bp 0.590637865926813 0.858550934853617 0.03801319 0.030723602 prediction 0.535826137853607 Functional Gain - MS4A5 ENSG00000166930 CDS Human protein_coding chr11:60198325 chr11:60198329 nonsynonymous SNV 0.677 0 25 hm5C_associated_SNPs_105283 0 0 0 0 2 unknown 0.500231643921093 0.500231643921093 0 1.11022302462516e-15 hm5C_site_58428 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 58429 chr8 144465283 144465283 1 + C G rs142559458 144465279 + 144465259 144465299 41 GCAGCCAGACACACCCACAGCACCCGCAGACCTCTAGGCCG GCAGCCAGACACACCCACAGCACCGGCAGACCTCTAGGCCG < 41bp 0.538313750947341 0.806218941729305 0.018789202 0.08121535 prediction 0.535810381563929 Functional Gain - RHPN1 ENSG00000158106 UTR3 Human protein_coding chr8:144465279 chr8:144465283 . . 0 25 hm5C_associated_SNPs_105284 0 0 0 0 0 Ribosome 0.500231643779819 0.500231718704561 0 1.49849484376574e-07 hm5C_site_58429 DeepMRMD:0;iRNA_m5C:1.49849484376574e-07 58430 chr22 51182579 51182579 1 + T A SKCM 51182575 + 51182555 51182595 41 CGACCCAGTGGTACAATGGGCGCGTTCAGCCAACCAATGTG CGACCCAGTGGTACAATGGGCGCGATCAGCCAACCAATGTG < 41bp 0.590452619171576 0.858346804505845 0.33754724 0.43334743 prediction 0.535788370668538 Functional Gain - ACR ENSG00000100312 CDS Human protein_coding chr22:51182575 chr22:51182579 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_105285 0 0 0 0 2 exosome 0.50023164344445 0.500231643919942 0 9.5098418029238e-10 hm5C_site_58430 DeepMRMD:0;iRNA_m5C:9.5098418029238e-10 58431 chr20 44333105 44333105 1 + C A rs75216546 44333101 + 44333081 44333121 41 AGAGTATATCTTGGAACCTCCACCCTGCATATCAGCACCTG AGAGTATATCTTGGAACCTCCACCATGCATATCAGCACCTG < 41bp 0.35221000211643 0.767892830935558 0.12830624 0.07011801 prediction 0.535785661871117 Functional Gain - WFDC13 ENSG00000168634 CDS Human protein_coding chr20:44333101 chr20:44333105 synonymous SNV . 0 25 hm5C_associated_SNPs_105286 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_58431 DeepMRMD:0;iRNA_m5C:0 58432 chr2 207508994 207508994 1 + C G STAD 207508990 + 207508970 207509010 41 CCTGGGAACAGAGGAGGGATCCACCGCCCCTTGAGCTTCAC CCTGGGAACAGAGGAGGGATCCACGGCCCCTTGAGCTTCAC < 41bp 0.495783738976265 0.767881636464361 0.063862205 0.2456786 prediction 0.535763272928722 Functional Gain - FAM237A ENSG00000235118 ncRNA_exonic Human protein_coding chr2:207508990 chr2:207508994 . . 0 25 hm5C_associated_SNPs_105287 0 0 0 0 1 unknown 0.500231643835683 0.500288856954389 0 0.000114426237413534 hm5C_site_58432 DeepMRMD:0;iRNA_m5C:0.000114426237413534 58433 chr12 53681945 53681945 1 + C G rs145892138 53681944 + 53681924 53681964 41 CCTGGCCTGAATGGCAGGAGCCGGAGGGCCAAGAAGGTGGC CCTGGCCTGAATGGCAGGAGCGGGAGGGCCAAGAAGGTGGC < 41bp 0.57056381672679 0.838445387145414 0.9103102 0.9071392 prediction 0.535763140837246 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53681944 chr12:53681945 nonsynonymous SNV 0.041 1 22 hm5C_associated_SNPs_105288 0 0 1 1 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_58433 DeepMRMD:0;iRNA_m5C:0 58434 chr5 126746208 126746208 1 + C G KIRC 126746204 + 126746184 126746224 41 TGTGAAGCAGGCTTTGCTGGCGAGCGCTGCGAAGCACGCCT TGTGAAGCAGGCTTTGCTGGCGAGGGCTGCGAAGCACGCCT < 41bp 0.545930545600603 0.813802405888805 0.52837205 0.9088893 prediction 0.535743720576404 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126746204 chr5:126746208 nonsynonymous SNV 0.135 0 25 hm5C_associated_SNPs_105289 0 0 0 0 1 exosome 0.500231470926703 0.500231647953828 0.7610345 3.54054250140123e-07 hm5C_site_58434 DeepMRMD:0.7610345;iRNA_m5C:3.54054250140123e-07 58435 chr16 11000892 11000892 1 + T A LUSC 11000888 + 11000868 11000908 41 CAAGATGGCTTCCTGCACAGCACGTGCGGACCGGCACCGGC CAAGATGGCTTCCTGCACAGCACGAGCGGACCGGCACCGGC < 41bp 0.579474399378046 0.847343783011088 0.21080121 0.10652432 prediction 0.535738767266085 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11000888 chr16:11000892 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105290 0 0 0 0 0 Nucleus 0.500231648332135 0.500231647678492 0 0 hm5C_site_58435 DeepMRMD:0;iRNA_m5C:0 58436 chr3 32208809 32208809 1 + T G rs529696104 32208806 + 32208786 32208826 41 AGCAAGTCCCAAACACATTACACTGAAGAGATTTTGGTGAG AGCAAGTCCCAAACACATTACACGGAAGAGATTTTGGTGAG < 41bp 0.421501777943203 0.767867067844237 0.048281997 0.23264563 prediction 0.535734135688474 Functional Gain - GPD1L ENSG00000152642 UTR3 Human protein_coding chr3:32208806 chr3:32208809 . . 0 24 hm5C_associated_SNPs_105291 0 0 1 1 0 Cytosol 0.500231643921093 0.500231643921092 0 0 hm5C_site_58436 DeepMRMD:0;iRNA_m5C:0 58437 chr1 164815937 164815937 1 + T A rs142359401 164815933 + 164815913 164815953 41 ATCTCCCAGCAATCGCATCCCGGCTGACCCTGTGCCCCAGT ATCTCCCAGCAATCGCATCCCGGCAGACCCTGTGCCCCAGT < 41bp 0.544382522607681 0.812237704744165 0.90054953 0.84497184 prediction 0.535710364272967 Functional Gain - PBX1 ENSG00000185630 UTR3 Human protein_coding chr1:164815933 chr1:164815937 . . 0 25 hm5C_associated_SNPs_105292 0 0 0 0 0 Ribosome 0.50023164351067 0.500231648156612 0 9.29188281872939e-09 hm5C_site_58437 DeepMRMD:0;iRNA_m5C:9.29188281872939e-09 58438 chr22 41077548 41077548 1 + C A rs137903389 41077544 + 41077524 41077564 41 CCTGCCTTTTGTGGTCATCACAGCCGCATACGTGAGGATCC CCTGCCTTTTGTGGTCATCACAGCAGCATACGTGAGGATCC < 41bp 0.650195373392111 0.918041992911569 0.8753163 0.8820845 prediction 0.535693239038916 Functional Gain - MCHR1 ENSG00000128285 CDS Human protein_coding chr22:41077544 chr22:41077548 synonymous SNV . 0 25 hm5C_associated_SNPs_105293 0 0 0 0 0 exosome 0.500231643944521 0.500231571199221 0.0135364 0 hm5C_site_58438 DeepMRMD:0.0135364;iRNA_m5C:0 58439 chr12 12870508 12870508 1 + C G rs3093728 12870507 + 12870487 12870527 41 GACGGGCTTTGCCACCCTCTCCGCTTGCCTGGTCCCCTCTC GACGGGCTTTGCCACCCTCTCGGCTTGCCTGGTCCCCTCTC < 41bp 0.524383856415686 0.792215582425163 0.40525272 0.92035043 prediction 0.535663452018955 Functional Gain - CDKN1B ENSG00000111276 UTR5 Human protein_coding chr12:12870507 chr12:12870508 . . 0 22 hm5C_associated_SNPs_105294 1 0 1 0 0 Cytosol 0.500231643921495 0.500231644456635 0.84070086 1.07027942064519e-09 hm5C_site_58439 DeepMRMD:0.84070086;iRNA_m5C:1.07027942064519e-09 Multiple endocrine neoplasia Multiple endocrine neoplasia 58440 chr7 142881421 142881421 1 + C A UCEC 142881417 + 142881397 142881437 41 TGCCAGATCATCATGGCTGCCTACCCTGCCAGCCACTCAAT TGCCAGATCATCATGGCTGCCTACACTGCCAGCCACTCAAT < 41bp 0.37280129438542 0.767829666508597 0.0076185465 0.060212582 prediction 0.535659333017194 Functional Gain - TAS2R39 ENSG00000236398 CDS Human protein_coding chr7:142881417 chr7:142881421 nonsynonymous SNV 0.430 3 25 hm5C_associated_SNPs_105295 0 0 0 0 0 unknown 0.500231643921093 0.500231644067178 0 2.9217006591864e-10 hm5C_site_58440 DeepMRMD:0;iRNA_m5C:2.9217006591864e-10 58441 chr3 195943476 195943476 1 + C A rs549080859 195943472 + 195943452 195943492 41 GGGAAGACTCTGCAATTCTGCTTGCCCCCCACCCCGGCCCA GGGAAGACTCTGCAATTCTGCTTGACCCCCACCCCGGCCCA < 41bp 0.428442365372342 0.767819969253717 0.06266242 0.08162698 prediction 0.535639938507434 Functional Gain - SLC51A ENSG00000163959 UTR5 Human protein_coding chr3:195943472 chr3:195943476 . . 0 25 hm5C_associated_SNPs_105296 0 0 0 0 0 exosome 0.500231643921006 0.500231643921072 0 1.31894495325469e-13 hm5C_site_58441 DeepMRMD:0;iRNA_m5C:1.31894495325469e-13 58442 chr11 63753920 63753920 1 + T G UCEC 63753917 + 63753897 63753937 41 GGAAGCGGTCGGTAGTGCGGCGCTGTTTAAAGATGGCGGCG GGAAGCGGTCGGTAGTGCGGCGCGGTTTAAAGATGGCGGCG < 41bp 0.488715344263337 0.76780830806185 0.13646701 0.4162285 prediction 0.5356166161237 Functional Gain - OTUB1 ENSG00000167770;ENSG00000256100 CDS Human other chr11:63753917 chr11:63753920 nonsynonymous SNV 0.999 0 24 hm5C_associated_SNPs_105297 0 0 1 0 1 Ribosome 0.500231644217588 0.500231642724319 0 0 hm5C_site_58442 DeepMRMD:0;iRNA_m5C:0 58443 chr6 37141962 37141962 1 + C A rs12197850 37141958 + 37141938 37141978 41 CCCGAGTACCAGTGACACGTCTCGCCAAGCAGGACAGTGCT CCCGAGTACCAGTGACACGTCTCGACAAGCAGGACAGTGCT < 41bp 0.359760542595921 0.76780665899382 0.23695919 0.93450254 prediction 0.535613317987639 Functional Gain - PIM1 ENSG00000137193 UTR3 Human protein_coding chr6:37141958 chr6:37141962 . . 0 25 hm5C_associated_SNPs_105298 0 0 1 0 0 Cytosol 0.500231641141488 0.500231643937695 0.86900508 5.59241475350802e-09 hm5C_site_58443 DeepMRMD:0.86900508;iRNA_m5C:5.59241475350802e-09 58444 chr21 44313401 44313401 1 + C G rs201202115 44313397 + 44313377 44313417 41 CGGCTGTTCAGGCGCGGGTGCGCGCGCAGCTGCTGTGGCCC CGGCTGTTCAGGCGCGGGTGCGCGGGCAGCTGCTGTGGCCC < 41bp 0.521404345631507 0.78919140557681 0.39242637 0.90847623 prediction 0.535574119890608 Functional Gain - NDUFV3 ENSG00000160194 UTR5 Human protein_coding chr21:44313397 chr21:44313401 . . 0 25 hm5C_associated_SNPs_105299 0 0 1 0 1 Nucleus 0.500231643924713 0.500231643921026 0.81695246 0 hm5C_site_58444 DeepMRMD:0.81695246;iRNA_m5C:0 58445 chr19 49843594 49843594 1 + C G rs201920299 49843590 + 49843570 49843610 41 CGCTCGATACCGTTAGGCCCCGCCCTCCCCAAAGTCCCGCC CGCTCGATACCGTTAGGCCCCGCCGTCCCCAAAGTCCCGCC < 41bp 0.479813532581332 0.767785039706658 0.119140774 0.15265962 prediction 0.535570079413316 Functional Gain - CD37 ENSG00000197813 ncRNA_exonic Human lincRNA chr19:49843590 chr19:49843594 . . 0 25 hm5C_associated_SNPs_105300 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643890756 0 0 hm5C_site_58445 DeepMRMD:0;iRNA_m5C:0 58446 chr7 100198208 100198208 1 + C G CESC 100198204 + 100198184 100198224 41 GCCACCAGGGAGTGCCTATACATCCTGTCCAGCCACGACAT GCCACCAGGGAGTGCCTATACATCGTGTCCAGCCACGACAT < 41bp 0.527370363390411 0.795145539187064 0.01060909 0.039041907 prediction 0.535550351593305 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100198204 chr7:100198208 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_105301 0 0 0 0 1 exosome 0.500231625300311 0.50023157719412 0 0 hm5C_site_58446 DeepMRMD:0;iRNA_m5C:0 58447 chr2 233899561 233899561 1 + C A LUSC 233899557 + 233899537 233899577 41 GCCGACCTGGGTGCCTACCTCAACCCGCGACCTCCAGCCCC GCCGACCTGGGTGCCTACCTCAACACGCGACCTCCAGCCCC < 41bp 0.6414877648119 0.909262683910829 0.37188855 0.48255098 prediction 0.535549838197859 Functional Gain - NEU2 ENSG00000115488 CDS Human protein_coding chr2:233899557 chr2:233899561 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_105302 0 0 0 0 0 exosome 0.500231643921092 0.500231643843673 0 0 hm5C_site_58447 DeepMRMD:0;iRNA_m5C:0 58448 chr14 29237686 29237686 1 + T A SKCM 29237682 + 29237662 29237702 41 TCGGTGCCCTGCTCTGGGACCTACTCCCTCAACCCCTGCTC TCGGTGCCCTGCTCTGGGACCTACACCCTCAACCCCTGCTC < 41bp 0.44200837696454 0.767774659840999 0.3698063 0.33457637 prediction 0.535549319681999 Functional Gain - FOXG1 ENSG00000176165 CDS Human protein_coding chr14:29237682 chr14:29237686 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_105303 0 0 1 0 0 Cytosol 0.50023164789344 0.500231643889899 0 0 hm5C_site_58448 DeepMRMD:0;iRNA_m5C:0 58449 chr7 99578430 99578430 1 + T A LUAD 99578426 + 99578406 99578446 41 TGGTGTCTGTCCTGCTGTCTCTGCTGCTGCTTCTGGGTCCT TGGTGTCTGTCCTGCTGTCTCTGCAGCTGCTTCTGGGTCCT < 41bp 0.567853743255373 0.83560345528711 0.25144416 0.37675208 prediction 0.535499424063473 Functional Gain - AZGP1P1 ENSG00000214313 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:99578426 chr7:99578430 . . 0 25 hm5C_associated_SNPs_105304 0 0 0 0 1 unknown 0.500239321890139 0.500252289070857 0 2.59343614363861e-05 hm5C_site_58449 DeepMRMD:0;iRNA_m5C:2.59343614363861e-05 58450 chr1 57333306 57333306 1 + C G LUAD 57333302 + 57333282 57333322 41 GAGAGTAAGACGGGCAGCTACACCCGCAGCAGTTACCTGCC GAGAGTAAGACGGGCAGCTACACCGGCAGCAGTTACCTGCC < 41bp 0.553296222058405 0.821042940424376 0.39499402 0.8834599 prediction 0.535493436731943 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57333302 chr1:57333306 synonymous SNV . 0 25 hm5C_associated_SNPs_105305 0 0 0 0 2 cytosol 0.500231643920831 0.500231642390932 0.7669198 0 hm5C_site_58450 DeepMRMD:0.7669198;iRNA_m5C:0 58451 chr6 25669793 25669793 1 + C G SKCM 25669792 + 25669772 25669812 41 TTTATATCAGCTGCTGAGCTCCGCGTGAGTGTCACTGGGTG TTTATATCAGCTGCTGAGCTCGGCGTGAGTGTCACTGGGTG < 41bp 0.459745833239433 0.767746618923316 0.40032068 0.8796631 prediction 0.535493237846633 Functional Gain - SCGN ENSG00000079689 CDS Human protein_coding chr6:25669792 chr6:25669793 nonsynonymous SNV 0.066 1 22 hm5C_associated_SNPs_105306 0 0 0 0 2 cytosol 0.500231643925107 0.500231643921096 0.7593262 0 hm5C_site_58451 DeepMRMD:0.7593262;iRNA_m5C:0 58452 chr5 150157947 150157947 1 + C G rs12653083 150157946 + 150157926 150157966 41 GAAACAGAGTGGCAAAGCCTCCGAAGGACCCTACACTTCGG GAAACAGAGTGGCAAAGCCTCGGAAGGACCCTACACTTCGG < 41bp 0.507257850808892 0.774996912760385 0.25484502 0.7106361 prediction 0.535478123902985 Functional Gain - SMIM3 ENSG00000256235;ENSG00000269636 UTR5 Human other chr5:150157946 chr5:150157947 . . 0 22 hm5C_associated_SNPs_105307 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.4212722 6.66133814775094e-16 hm5C_site_58452 DeepMRMD:0.4212722;iRNA_m5C:6.66133814775094e-16 58453 chr15 23811425 23811425 1 + C A LUAD 23811421 + 23811401 23811441 41 GAAGCCCCCCCGGCTGCATCCTCCCTTTCCTTGCCTGTGAT GAAGCCCCCCCGGCTGCATCCTCCATTTCCTTGCCTGTGAT < 41bp 0.34723692969682 0.767733124702667 0.0881359 0.94693744 prediction 0.535466249405333 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811421 chr15:23811425 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_105308 0 0 0 0 0 chromatin 0.500231631116032 0.500231642966519 0.89387488 2.37009749604056e-08 hm5C_site_58453 DeepMRMD:0.89387488;iRNA_m5C:2.37009749604056e-08 End stage renal disease x APOL1 genotype interaction 58454 chr5 173317642 173317642 1 + C G SKCM 173317638 + 173317618 173317658 41 ACCCTCCTCTTCCTGGAGCCCGGGCGGTGGTGGATATGGTG ACCCTCCTCTTCCTGGAGCCCGGGGGGTGGTGGATATGGTG < 41bp 0.50407531213593 0.771808037063908 0.89091337 0.9113517 prediction 0.535465449855957 Functional Gain - CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173317638 chr5:173317642 synonymous SNV . 0 25 hm5C_associated_SNPs_105309 0 0 1 0 0 Ribosome 0.500231643921093 0.500231644042544 0.0408766599999999 2.42902142844059e-10 hm5C_site_58454 DeepMRMD:0.0408766599999999;iRNA_m5C:2.42902142844059e-10 58455 chr20 56726068 56726068 1 + T G PRAD 56726066 + 56726046 56726086 41 CGGCGGCTGAACGCATGAACCTTGTGGGTCAGGATGAGATC CGGCGGCTGAACGCATGAACCTGGTGGGTCAGGATGAGATC < 41bp 0.60227551587286 0.870006289944708 0.037562072 0.35358998 prediction 0.535461548143696 Functional Gain - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56726066 chr20:56726068 synonymous SNV . 0 23 hm5C_associated_SNPs_105310 0 0 0 0 1 unknown 0.500227392067007 0.50022798280862 0 1.18148322592049e-06 hm5C_site_58455 DeepMRMD:0;iRNA_m5C:1.18148322592049e-06 58456 chr16 55608548 55608548 1 + T C UCEC 55608546 + 55608526 55608566 41 ATCCCATCCTTTCACAGAACCATGATGGCAGCATTGACTTC ATCCCATCCTTTCACAGAACCACGATGGCAGCATTGACTTC < 41bp 0.521480140031362 0.789208902156343 0.07682365 0.0836665 prediction 0.535457524249962 Functional Gain - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55608546 chr16:55608548 synonymous SNV . 0 23 hm5C_associated_SNPs_105311 0 0 0 0 2 Ribosome 0.500231643925645 0.500231643925519 0 0 hm5C_site_58456 DeepMRMD:0;iRNA_m5C:0 58457 chr12 112919948 112919948 1 + T G HNSC 112919946 + 112919926 112919966 41 GGCGTCATGCGTGTTAGGAACGTCAAAGAAAGCGCCGCTCA GGCGTCATGCGTGTTAGGAACGGCAAAGAAAGCGCCGCTCA < 41bp 0.581330787323873 0.849050172087383 0.18296868 0.36841255 prediction 0.535438769527021 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112919946 chr12:112919948 nonsynonymous SNV 0.993 2 23 hm5C_associated_SNPs_105312 0 0 0 0 1 Ribosome 0.50023164387922 0.500231643921765 0 8.50899350979262e-11 hm5C_site_58457 DeepMRMD:0;iRNA_m5C:8.50899350979262e-11 58458 chr8 122652154 122652154 1 + C G rs111529237 122652150 + 122652130 122652170 41 CGCCCCGTTCATCGGCTGGGCGCTCGAGACGGCGCCCCCAG CGCCCCGTTCATCGGCTGGGCGCTGGAGACGGCGCCCCCAG < 41bp 0.500699627774081 0.76841255546072 0.25779352 0.46022618 prediction 0.535425855373277 Functional Gain - HAS2-AS1 ENSG00000248690 ncRNA_exonic Human antisense chr8:122652150 chr8:122652154 . . 0 25 hm5C_associated_SNPs_105313 0 0 1 0 0 unknown 0.500232012793062 0.500231643921091 0 0 hm5C_site_58458 DeepMRMD:0;iRNA_m5C:0 58459 chrX 101971973 101971973 1 + T A UCEC 101971969 + 101971949 101971989 41 AACTATATGTCCGGGTTTCTCTCCTTATTAACCACAGCCAA AACTATATGTCCGGGTTTCTCTCCATATTAACCACAGCCAA < 41bp 0.597101001651112 0.864806300142626 0.12125087 0.9632767 prediction 0.535410596983028 Functional Gain - ARMCX5-GPRASP2;GPRASP2 ENSG00000158301 CDS Human protein_coding chrX:101971969 chrX:101971973 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105314 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0.9265534 0 hm5C_site_58459 DeepMRMD:0.9265534;iRNA_m5C:0 58460 chr12 131851405 131851405 1 + C G rs61934546 131851401 + 131851381 131851421 41 CTGCTGGGTCCCAGGGAGGCCATGCGGGGCACTCCACAGAA CTGCTGGGTCCCAGGGAGGCCATGGGGGGCACTCCACAGAA < 41bp 0.4946560691779 0.767694810968012 0.80315363 0.8991413 prediction 0.535389621936023 Functional Gain - LINC02370 ENSG00000230294 ncRNA_exonic Human lincRNA chr12:131851401 chr12:131851405 . . 0 25 hm5C_associated_SNPs_105315 0 0 0 0 0 unknown 0.500231643924803 0.5002316439211 0.19197534 0 hm5C_site_58460 DeepMRMD:0.19197534;iRNA_m5C:0 58461 chr11 6867317 6867317 1 + T G LUAD 6867314 + 6867294 6867334 41 CTGCAGTCCCTTGCACTACCCAGTCATCATGAACCAAAGGA CTGCAGTCCCTTGCACTACCCAGGCATCATGAACCAAAGGA < 41bp 0.373226591387711 0.767681518317796 0.09686926 0.5277513 prediction 0.535363036635592 Functional Gain - OR10A5 ENSG00000166363 CDS Human protein_coding chr11:6867314 chr11:6867317 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_105316 0 0 0 0 0 unknown 0.500231643921093 0.500231643921597 0.0555026000000001 1.00985886319904e-12 hm5C_site_58461 DeepMRMD:0.0555026000000001;iRNA_m5C:1.00985886319904e-12 58462 chrX 55650343 55650343 1 + C A UCS 55650339 + 55650319 55650359 41 ATGCCTCAGAAGAGGAGACCCAGTCCTGATGGAGATGGTCC ATGCCTCAGAAGAGGAGACCCAGTACTGATGGAGATGGTCC < 41bp 0.38229142578596 0.767676875466765 0.046432465 0.6006412 prediction 0.53535375093353 Functional Gain - FOXR2 ENSG00000189299 CDS Human protein_coding chrX:55650339 chrX:55650343 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_105317 0 0 0 0 0 unknown 0.500225892632663 0.500231643644895 0.2012824 1.15020244628727e-05 hm5C_site_58462 DeepMRMD:0.2012824;iRNA_m5C:1.15020244628727e-05 58463 chr10 104215165 104215165 1 + C G rs143449005 104215164 + 104215144 104215184 41 TGATCCTCCTACCTCAGCTTCCTGAGTAGCTAGGACCACAG TGATCCTCCTACCTCAGCTTCGTGAGTAGCTAGGACCACAG < 41bp 0.555765411272853 0.823433910206885 0.15189981 0.4186526 prediction 0.535336997868063 Functional Gain - RPARP-AS1 ENSG00000269609 ncRNA_exonic Human processed_transcript chr10:104215164 chr10:104215165 . . 0 22 hm5C_associated_SNPs_105318 0 0 1 0 1 unknown 0.500231643928164 0.500231510219418 0 0 hm5C_site_58463 DeepMRMD:0;iRNA_m5C:0 58464 chr1 13036643 13036643 1 + C G SARC 13036639 + 13036619 13036659 41 AGCCAGATGAGGAATCTTCGCAAACTCTTCATCTCCGATGG AGCCAGATGAGGAATCTTCGCAAAGTCTTCATCTCCGATGG < 41bp 0.477649147794391 0.767660030809444 0.15488431 0.34332365 prediction 0.535320061618889 Functional Gain - PRAMEF18;PRAMEF22 ENSG00000204508 CDS Human other chr1:13036639 chr1:13036643 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105319 0 0 0 0 0 unknown 0.500231643921098 0.500231643921125 0 5.32907051820075e-14 hm5C_site_58464 DeepMRMD:0;iRNA_m5C:5.32907051820075e-14 58465 chr11 120099671 120099671 1 + C A rs149920245 120099667 + 120099647 120099687 41 GGTGGGGGACCACGGGAAGCCCTGCGTCTGCCGCTATGGCC GGTGGGGGACCACGGGAAGCCCTGAGTCTGCCGCTATGGCC < 41bp 0.389143655040916 0.767658689862241 0.4717997 0.84245414 prediction 0.535317379724482 Functional Gain - OAF ENSG00000184232 CDS Human protein_coding chr11:120099667 chr11:120099671 stopgain 0.003 1 25 hm5C_associated_SNPs_105320 0 0 0 0 1 Endoplasmic reticulum 0.500231643921117 0.500231643921093 0.68490828 0 hm5C_site_58465 DeepMRMD:0.68490828;iRNA_m5C:0 58466 chr12 113724851 113724851 1 + T C UCEC 113724849 + 113724829 113724869 41 CTGCTGGCGCTGGCCCTCAACATGGAGCCCTTCTATTTCAT CTGCTGGCGCTGGCCCTCAACACGGAGCCCTTCTATTTCAT < 41bp 0.511243679836726 0.778891334014171 0.053029746 0.11365911 prediction 0.535295308354891 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113724849 chr12:113724851 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105321 0 0 1 0 2 chromatin 0.500231643865806 0.500231643650681 0 0 hm5C_site_58466 DeepMRMD:0;iRNA_m5C:0 58467 chr16 31500071 31500071 1 + C A LUAD 31500067 + 31500047 31500087 41 CGCCTGCGGCCACGCGCCGGCGACCGCGAGCTGCTGCTGGT CGCCTGCGGCCACGCGCCGGCGACAGCGAGCTGCTGCTGGT < 41bp 0.371979963628037 0.767641503812973 0.16442558 0.4423351 prediction 0.535283007625946 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500067 chr16:31500071 nonsynonymous SNV 0.235 2 25 hm5C_associated_SNPs_105322 0 0 0 0 1 exosome 0.500231643919612 0.500230505425852 0 0 hm5C_site_58467 DeepMRMD:0;iRNA_m5C:0 58468 chr19 42265883 42265883 1 + C G LUSC 42265882 + 42265862 42265902 41 TTCTCTTTCCTCCAGATGGCCCAGATGGCCCCACCATTTCC TTCTCTTTCCTCCAGATGGCCGAGATGGCCCCACCATTTCC < 41bp 0.457148417949227 0.767633044814438 0.0065131485 0.04964739 prediction 0.535266089628876 Functional Gain - CEACAM6 ENSG00000086548 CDS Human protein_coding chr19:42265882 chr19:42265883 nonsynonymous SNV 0.162 3 22 hm5C_associated_SNPs_105323 0 0 0 0 1 Ribosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_58468 DeepMRMD:0;iRNA_m5C:0 58469 chr17 73753534 73753534 1 + C G rs200199740 73753530 + 73753510 73753550 41 GGGGGCCCAGCACCTGGAGGCAGGCGGCTCCCTCACCCGGC GGGGGCCCAGCACCTGGAGGCAGGGGGCTCCCTCACCCGGC < 41bp 0.49791725241817 0.767629676863906 0.9369118 0.9498056 prediction 0.535259353727812 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73753530 chr17:73753534 synonymous SNV . 0 25 hm5C_associated_SNPs_105324 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.0257876000000001 0 hm5C_site_58469 DeepMRMD:0.0257876000000001;iRNA_m5C:0 58470 chr10 17451731 17451731 1 + C G rs112423057 17451730 + 17451710 17451750 41 TACTAAAAGTACAAAATTAGCCGGCATGGTGGTGCATGCCT TACTAAAAGTACAAAATTAGCGGGCATGGTGGTGCATGCCT < 41bp 0.529884467561969 0.797487080636844 0.2263932 0.526438 prediction 0.53520522614975 Functional Gain - ST8SIA6 ENSG00000204832 ncRNA_exonic Human antisense chr10:17451730 chr10:17451731 . . 0 22 hm5C_associated_SNPs_105325 0 0 0 0 0 chromatin 0.500231620955955 0.500231672010435 0.0528759999999999 1.02108960176039e-07 hm5C_site_58470 DeepMRMD:0.0528759999999999;iRNA_m5C:1.02108960176039e-07 58471 chr21 43963599 43963599 1 + T G SKCM 43963597 + 43963577 43963617 41 CACACCTCCGTGGGCAACATCTTGGGGTCATTGATCGCTGG CACACCTCCGTGGGCAACATCTGGGGGTCATTGATCGCTGG < 41bp 0.615121218011378 0.882722234748661 0.63822967 0.93136716 prediction 0.535202033474566 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43963597 chr21:43963599 nonsynonymous SNV 0.615 3 23 hm5C_associated_SNPs_105326 0 0 0 0 1 Nucleus 0.500231642227974 0.50023084600522 0.58627498 0 hm5C_site_58471 DeepMRMD:0.58627498;iRNA_m5C:0 58472 chr1 116670185 116670185 1 + C T UCEC 116670184 + 116670164 116670204 41 CTGGTCCCCGCAGTGGAGATCCCCACCACCTGGTCCAAGAA CTGGTCCCCGCAGTGGAGATCTCCACCACCTGGTCCAAGAA < 41bp 0.51817661308891 0.785758795658192 0.17584035 0.9408203 prediction 0.535164365138563 Functional Gain - MAB21L3 ENSG00000173212 CDS Human protein_coding chr1:116670184 chr1:116670185 nonsynonymous SNV 0.951 2 22 hm5C_associated_SNPs_105327 0 0 0 0 2 nucleus 0.500231643921092 0.500231643921092 0.8816406 0 hm5C_site_58472 DeepMRMD:0.8816406;iRNA_m5C:0 58473 chr2 131486823 131486823 1 + C A STAD 131486819 + 131486799 131486839 41 ACCCTGCATGCCCCAAGCAGCCAGCAACACTTCCTTGGGCC ACCCTGCATGCCCCAAGCAGCCAGAAACACTTCCTTGGGCC < 41bp 0.406545314084157 0.767577358140205 0.2876051 0.4131629 prediction 0.53515471628041 Functional Gain - GPR148 ENSG00000173302 CDS Human protein_coding chr2:131486819 chr2:131486823 nonsynonymous SNV 0.181 1 25 hm5C_associated_SNPs_105328 0 0 0 0 0 unknown 0.500231643921199 0.500231643922796 0 3.1934455080318e-12 hm5C_site_58473 DeepMRMD:0;iRNA_m5C:3.1934455080318e-12 58474 chr9 101894898 101894898 1 + C G SARC 101894897 + 101894877 101894917 41 ATGGTCTATATCTGCCACAACCGCACTGTCATTCACCATCG ATGGTCTATATCTGCCACAACGGCACTGTCATTCACCATCG < 41bp 0.466114055216166 0.767576063021581 0.30604064 0.20722935 prediction 0.535152126043162 Functional Gain - TGFBR1 ENSG00000106799 CDS Human protein_coding chr9:101894897 chr9:101894898 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_105329 0 0 1 0 0 Ribosome 0.500231644675242 0.500231643866997 0 0 hm5C_site_58474 DeepMRMD:0;iRNA_m5C:0 58475 chr20 37632409 37632409 1 + T A KIRC 37632405 + 37632385 37632425 41 TCTTTAGGAAGAGGTAGAAACTGTTGTGTCGATGCTCATCG TCTTTAGGAAGAGGTAGAAACTGTAGTGTCGATGCTCATCG < 41bp 0.444552710690975 0.767575788768846 0.27997622 0.38518175 prediction 0.535151577537693 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37632405 chr20:37632409 synonymous SNV . 0 25 hm5C_associated_SNPs_105330 0 0 1 0 1 Endoplasmic reticulum 0.500231643904348 0.500231643914162 0 1.96278548969531e-11 hm5C_site_58475 DeepMRMD:0;iRNA_m5C:1.96278548969531e-11 58476 chr11 125365351 125365351 1 + C G rs371596567 125365350 + 125365330 125365370 41 GCCCACCCGACGGCAGCGCGCCCCGCCACCGCGCAGCCGCC GCCCACCCGACGGCAGCGCGCGCCGCCACCGCGCAGCCGCC < 41bp 0.557490632117238 0.825065417137286 0.058744073 0.26470858 prediction 0.535149570040095 Functional Gain - LOC403312 ENSG00000255537 CDS Human antisense chr11:125365350 chr11:125365351 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_105331 0 0 0 0 0 unknown 0.500233386490557 0.500231646759432 0 0 hm5C_site_58476 DeepMRMD:0;iRNA_m5C:0 58477 chr14 86088433 86088433 1 + T A SKCM 86088429 + 86088409 86088449 41 AGCTGAGAGTGGATGAAAATCGAATTGCTGTCATATCCGAC AGCTGAGAGTGGATGAAAATCGAAATGCTGTCATATCCGAC < 41bp 0.451572884393483 0.767566938423554 0.22720411 0.24904492 prediction 0.535133876847108 Functional Gain - FLRT2 ENSG00000185070 CDS Human protein_coding chr14:86088429 chr14:86088433 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_105332 0 0 0 0 0 Ribosome 0.500231644127935 0.500231643925956 0 0 hm5C_site_58477 DeepMRMD:0;iRNA_m5C:0 58478 chr16 21261783 21261783 1 + C G OV 21261779 + 21261759 21261799 41 AGAGAGAGTTTGGTTTTAAACTGCCCAGTGAATTGCTTCAA AGAGAGAGTTTGGTTTTAAACTGCGCAGTGAATTGCTTCAA < 41bp 0.531630504981615 0.799194893051842 0.12071219 0.20686609 prediction 0.535128776140454 Functional Gain - ANKS4B ENSG00000175311 CDS Human protein_coding chr16:21261779 chr16:21261783 nonsynonymous SNV 0.914 0 25 hm5C_associated_SNPs_105333 0 0 0 0 0 exosome 0.500231652267157 0.500231832189152 0 3.59843990604958e-07 hm5C_site_58478 DeepMRMD:0;iRNA_m5C:3.59843990604958e-07 58479 chr1 40961605 40961605 1 + T C rs115043751 40961603 + 40961583 40961623 41 ATGATTCATCCTTTAAAAAACATCAGAGACATCACACTGGA ATGATTCATCCTTTAAAAAACACCAGAGACATCACACTGGA < 41bp 0.500279715154943 0.767840651342201 0.08274472 0.12461123 prediction 0.535121872374516 Functional Gain - ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40961603 chr1:40961605 synonymous SNV . 0 23 hm5C_associated_SNPs_105334 0 0 0 0 0 insoluble cytoplasm 0.500231644227462 0.500231643934978 0 0 hm5C_site_58479 DeepMRMD:0;iRNA_m5C:0 58480 chrX 150844668 150844668 1 + T A rs189018655 150844664 + 150844644 150844684 41 AAATGGGGGGAGGGGGCAGGCCAATGAGGTCTGCATGGCCA AAATGGGGGGAGGGGGCAGGCCAAAGAGGTCTGCATGGCCA < 41bp 0.4829274191954 0.767553078612782 0.7789935 0.77313495 prediction 0.535106157225564 Functional Gain - PASD1 ENSG00000166049 UTR3 Human protein_coding chrX:150844664 chrX:150844668 . . 0 25 hm5C_associated_SNPs_105335 0 0 1 0 0 cytosol 0.500231645746426 0.50023164392372 0 0 hm5C_site_58480 DeepMRMD:0;iRNA_m5C:0 58481 chr19 15905710 15905710 1 + C A HNSC 15905706 + 15905686 15905726 41 CATCACCTACACGGTCCTCACACCCTTCCTCAGCCCCATCA CATCACCTACACGGTCCTCACACCATTCCTCAGCCCCATCA < 41bp 0.642880189814528 0.910429214642512 0.009934992 0.03146091 prediction 0.535098049655968 Functional Gain - OR10H5 ENSG00000172519 CDS Human protein_coding chr19:15905706 chr19:15905710 synonymous SNV . 0 25 hm5C_associated_SNPs_105336 0 0 0 0 0 unknown 0.500211908581524 0.500231637317634 0 3.94574722200058e-05 hm5C_site_58481 DeepMRMD:0;iRNA_m5C:3.94574722200058e-05 58482 chr3 120321252 120321252 1 + C A rs145250470 120321248 + 120321228 120321268 41 ACACCCTAACAACACAGAAGCAGACGCAGCCCGTGTTGGGA ACACCCTAACAACACAGAAGCAGAAGCAGCCCGTGTTGGGA < 41bp 0.543655249561639 0.811197671541518 0.4014572 0.6730304 prediction 0.535084843959759 Functional Gain - NDUFB4 ENSG00000065518 UTR3 Human protein_coding chr3:120321248 chr3:120321252 . . 0 25 hm5C_associated_SNPs_105337 0 0 1 0 0 Ribosome 0.500231643921095 0.500231643921092 0.3460608 0 hm5C_site_58482 DeepMRMD:0.3460608;iRNA_m5C:0 58483 chr12 65088729 65088729 1 + C G rs147473484 65088728 + 65088708 65088748 41 CCGTGAGGCCCGGTGCAGGACCGATGTACAAAACAGCAGCA CCGTGAGGCCCGGTGCAGGACGGATGTACAAAACAGCAGCA < 41bp 0.558644315050931 0.826185974627091 0.7251214 0.55876714 prediction 0.535083319152318 Functional Gain - RASSF3 ENSG00000153179 UTR3 Human protein_coding chr12:65088728 chr12:65088729 . . 0 22 hm5C_associated_SNPs_105338 0 0 1 0 0 chromatin 0.500231643921119 0.500231643921096 0 0 hm5C_site_58483 DeepMRMD:0;iRNA_m5C:0 58484 chr2 231742826 231742826 1 + C G rs373905541 231742822 + 231742802 231742842 41 CGGGGTGGTGTGAGGCCCTCCTCCCCCAGAACCCCCTGCCG CGGGGTGGTGTGAGGCCCTCCTCCGCCAGAACCCCCTGCCG < 41bp 0.472559678324709 0.767526180408815 0.074484795 0.11301154 prediction 0.535052360817631 Functional Gain - ITM2C ENSG00000135916 UTR3 Human protein_coding chr2:231742822 chr2:231742826 . . 0 25 hm5C_associated_SNPs_105339 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58484 DeepMRMD:0;iRNA_m5C:0 58485 chr18 56585630 56585630 1 + T G SKCM 56585628 + 56585608 56585648 41 TTGAGTCTGGACACGATGACCATGAAAGCCACATGAAGCAG TTGAGTCTGGACACGATGACCAGGAAAGCCACATGAAGCAG < 41bp 0.568846327724486 0.836366928861477 0.22704029 0.88566744 prediction 0.535041202273982 Functional Gain - ZNF532 ENSG00000074657 CDS Human protein_coding chr18:56585628 chr18:56585630 nonsynonymous SNV 0.875 0 23 hm5C_associated_SNPs_105340 0 0 0 0 0 Cytosol 0.500231687388769 0.500231643912571 0.77133488 0 hm5C_site_58485 DeepMRMD:0.77133488;iRNA_m5C:0 58486 chr11 193139 193139 1 + C G BLCA 193135 + 193115 193155 41 GCCCTCCTGCTGGTGGCCCTCACCCTGTTCTGCATCTGCCG GCCCTCCTGCTGGTGGCCCTCACCGTGTTCTGCATCTGCCG < 41bp 0.481347972371059 0.767512593134566 0.15379691 0.2688981 prediction 0.535025186269132 Functional Gain - SCGB1C1;SCGB1C2 ENSG00000188076 CDS Human protein_coding chr11:193135 chr11:193139 nonsynonymous SNV 0.163 0 25 hm5C_associated_SNPs_105341 0 0 0 0 1 unknown 0.500231643921134 0.500232247029229 0 1.20621618981964e-06 hm5C_site_58486 DeepMRMD:0;iRNA_m5C:1.20621618981964e-06 58487 chr21 45876889 45876889 1 + C G BLCA 45876885 + 45876865 45876905 41 GGGGCCTGCGGCTGCTGGACCTGTCTTACAACCGCATCCAG GGGGCCTGCGGCTGCTGGACCTGTGTTACAACCGCATCCAG < 41bp 0.484710686176598 0.767506694720501 0.25363272 0.12744159 prediction 0.535013389441003 Functional Gain - LRRC3 ENSG00000160233 CDS Human protein_coding chr21:45876885 chr21:45876889 nonsynonymous SNV 0.266 5 25 hm5C_associated_SNPs_105342 0 0 0 0 0 exosome 0.500231643921092 0.500231643921097 0 8.21565038222616e-15 hm5C_site_58487 DeepMRMD:0;iRNA_m5C:8.21565038222616e-15 58488 chr3 64185816 64185816 1 + C G rs79655814 64185815 + 64185795 64185835 41 TTTCCCATATCCCTCTGCCCCCAGGCTCTAACAACCACTAA TTTCCCATATCCCTCTGCCCCGAGGCTCTAACAACCACTAA < 41bp 0.529832957889592 0.797337187441675 0.16967872 0.5475899 prediction 0.535008459104166 Functional Gain - PRICKLE2-AS3 ENSG00000226017 ncRNA_exonic Human antisense chr3:64185815 chr3:64185816 . . 0 22 hm5C_associated_SNPs_105343 0 0 0 0 0 unknown 0.500231643921076 0.500231643921092 0.0951797999999999 3.28626015289046e-14 hm5C_site_58488 DeepMRMD:0.0951797999999999;iRNA_m5C:3.28626015289046e-14 58489 chr18 30092385 30092385 1 + T A rs74656571 30092381 + 30092361 30092401 41 CTTCTTGGGACGTGGTGTTCCACATTTGCCTCCTGGCAGAA CTTCTTGGGACGTGGTGTTCCACAATTGCCTCCTGGCAGAA < 41bp 0.531973661539091 0.799466076844786 0.037501365 0.07027638 prediction 0.53498483061139 Functional Gain - WBP11P1 ENSG00000260389 ncRNA_exonic Human transcribed_processed_pseudogene chr18:30092381 chr18:30092385 . . 0 25 hm5C_associated_SNPs_105344 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_58489 DeepMRMD:0;iRNA_m5C:0 58490 chr16 22826174 22826174 1 + C A rs544648844 22826170 + 22826150 22826190 41 TGATCCCTCCGGGCCGACGCCCAGCGAGCCCAGCGCTCCCA TGATCCCTCCGGGCCGACGCCCAGAGAGCCCAGCGCTCCCA < 41bp 0.638988810220394 0.906469495539186 0.09037095 0.1479812 prediction 0.534961370637585 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22826170 chr16:22826174 nonsynonymous SNV 0.984 0 25 hm5C_associated_SNPs_105345 0 0 0 0 0 exosome 0.500231643921588 0.500231643923778 0 4.37894165372654e-12 hm5C_site_58490 DeepMRMD:0;iRNA_m5C:4.37894165372654e-12 58491 chr7 157129802 157129802 1 + C G rs551880529 157129798 + 157129778 157129818 41 AGGAGATTCGGGCCGTCACCCTGCCTCCCCTGCGTCCCGCC AGGAGATTCGGGCCGTCACCCTGCGTCCCCTGCGTCCCGCC < 41bp 0.485853427369013 0.767477282857076 0.70665985 0.8160224 prediction 0.534954565714152 Functional Gain - DNAJB6 ENSG00000105993 UTR5 Human protein_coding chr7:157129798 chr7:157129802 . . 0 25 hm5C_associated_SNPs_105346 0 0 0 0 1 Ribosome 0.500231639432623 0.500231643920611 0.2187251 8.97597640658887e-09 hm5C_site_58491 DeepMRMD:0.2187251;iRNA_m5C:8.97597640658887e-09 58492 chr18 7231610 7231610 1 + C A LUAD 7231606 + 7231586 7231626 41 CTGCCTGTCCCAGCTCCCTGCATGCTTCGCCGACCTCTCTA CTGCCTGTCCCAGCTCCCTGCATGATTCGCCGACCTCTCTA < 41bp 0.370110925448546 0.767476121043147 0.3021115 0.2954258 prediction 0.534952242086294 Functional Gain - LRRC30 ENSG00000206422 CDS Human protein_coding chr18:7231606 chr18:7231610 stopgain 0.062 1 25 hm5C_associated_SNPs_105347 0 0 0 0 0 unknown 0.500231643922111 0.500231646262467 0 4.68071292836214e-09 hm5C_site_58492 DeepMRMD:0;iRNA_m5C:4.68071292836214e-09 58493 chr2 219100532 219100532 1 + C G rs149708515 219100531 + 219100511 219100551 41 GTGTGAAAGTAGTGTCTCAACCAGGTGCAGTGGCTCACACC GTGTGAAAGTAGTGTCTCAACGAGGTGCAGTGGCTCACACC < 41bp 0.483269637253941 0.767473892168757 0.8622432 0.8850697 prediction 0.534947784337514 Functional Gain - ARPC2 ENSG00000163466 intronic Human protein_coding chr2:219100531 chr2:219100532 . . 0 22 hm5C_associated_SNPs_105348 0 0 0 0 0 Cytosol 0.500231641962835 0.500231643939405 0.0456529999999999 3.95314003753811e-09 hm5C_site_58493 DeepMRMD:0.0456529999999999;iRNA_m5C:3.95314003753811e-09 58494 chr1 207641950 207641950 1 + C G rs75282758 207641949 + 207641929 207641969 41 AGAATGTTGGCTCCATTGCTCCAGGATTGTCTGTGACTTAC AGAATGTTGGCTCCATTGCTCGAGGATTGTCTGTGACTTAC < 41bp 0.460971535289088 0.767472245181731 0.3417734 0.9179597 prediction 0.534944490363462 Functional Gain - CR2 ENSG00000117322 CDS Human protein_coding chr1:207641949 chr1:207641950 nonsynonymous SNV 0.019 2 22 hm5C_associated_SNPs_105349 0 0 0 0 1 Endoplasmic reticulum 0.500234869541178 0.500231637566482 0.8359194 0 hm5C_site_58494 DeepMRMD:0.8359194;iRNA_m5C:0 58495 chr15 76496340 76496340 1 + C G rs937733 76496336 + 76496316 76496356 41 CCTCTGAGCCCGGCCCTTCTCCCCCGCCGCTGCCATCCCAG CCTCTGAGCCCGGCCCTTCTCCCCGGCCGCTGCCATCCCAG < 41bp 0.542661339010068 0.810132901594681 0.16237402 0.8684152 prediction 0.534943125169225 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76496336 chr15:76496340 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_105350 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921093 0.7368304 2.22044604925031e-16 hm5C_site_58495 DeepMRMD:0.7368304;iRNA_m5C:2.22044604925031e-16 58496 chr20 18296539 18296539 1 + C A UCEC 18296535 + 18296515 18296555 41 TGTCGTGAGACACCAGAGGACACACTTGGAGGAGAAGACCA TGTCGTGAGACACCAGAGGACACAATTGGAGGAGAAGACCA < 41bp 0.356171047458696 0.76746312677475 0.031828016 0.04423967 prediction 0.5349262535495 Functional Gain - ZNF133 ENSG00000125846 CDS Human protein_coding chr20:18296535 chr20:18296539 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_105351 0 0 1 0 0 Cytosol 0.50023164393011 0.500231643725709 0 0 hm5C_site_58496 DeepMRMD:0;iRNA_m5C:0 58497 chr5 175798882 175798882 1 + T G OV 175798880 + 175798860 175798900 41 GTGCACATCTGGAAACTGCTCTTGGAGCTCCTCTCCTAGGC GTGCACATCTGGAAACTGCTCTGGGAGCTCCTCTCCTAGGC < 41bp 0.59963510239784 0.867089520323863 0.1898042 0.6872363 prediction 0.534908835852047 Functional Gain - ARL10 ENSG00000175414 CDS Human protein_coding chr5:175798880 chr5:175798882 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_105352 0 0 1 0 0 cytosol 0.500231641600936 0.500231594867884 0.3744726 0 hm5C_site_58497 DeepMRMD:0.3744726;iRNA_m5C:0 58498 chr15 83781578 83781578 1 + T C UCEC 83781576 + 83781556 83781596 41 ACTATTGTAGGGGTTGCTGCCCTCATCCTGTTCCTGGTAGC ACTATTGTAGGGGTTGCTGCCCCCATCCTGTTCCTGGTAGC < 41bp 0.543201895541051 0.810653173991756 0.08614865 0.22433197 prediction 0.53490255690141 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83781576 chr15:83781578 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105353 0 0 0 2 2 chromatin 0.500231631318663 0.500231643921125 0 2.52049243698593e-08 hm5C_site_58498 DeepMRMD:0;iRNA_m5C:2.52049243698593e-08 58499 chr16 88810162 88810162 1 + C G rs75125384 88810161 + 88810141 88810181 41 GGATGCCCAGGACTCCCTGTCCGCACCACCAGGCAGCCGAG GGATGCCCAGGACTCCCTGTCGGCACCACCAGGCAGCCGAG < 41bp 0.533284157628805 0.800732834804518 0.104812354 0.89932215 prediction 0.534897354351426 Functional Gain - LOC339059 ENSG00000182376 ncRNA_exonic Human antisense chr16:88810161 chr16:88810162 . . 0 22 hm5C_associated_SNPs_105354 0 0 0 0 0 unknown 0.500231643921293 0.500231643920747 0.7986443 0 hm5C_site_58499 DeepMRMD:0.7986443;iRNA_m5C:0 Endometriosis 58500 chr6 111196387 111196387 1 + C G rs199935766 111196386 + 111196366 111196406 41 CGGCAGCAGCCCGACGCAAACCAAGGATCTGGGGATCTTCG CGGCAGCAGCCCGACGCAAACGAAGGATCTGGGGATCTTCG < 41bp 0.550515908391838 0.817939204600873 0.09668383 0.4054622 prediction 0.534846592418071 Functional Gain - AMD1 ENSG00000123505 CDS Human protein_coding chr6:111196386 chr6:111196387 nonsynonymous SNV 0.735 0 22 hm5C_associated_SNPs_105355 0 0 1 0 1 Cytosol 0.500231643921099 0.500231643921011 0 0 hm5C_site_58500 DeepMRMD:0;iRNA_m5C:0 58501 chr17 9792953 9792953 1 + C G LUAD 9792952 + 9792932 9792972 41 GCCCCGGGGCAGCAGCCTGTCCGAGTGCAGTGAGGGGGATG GCCCCGGGGCAGCAGCCTGTCGGAGTGCAGTGAGGGGGATG < 41bp 0.569541784228463 0.836961314020175 0.15708694 0.89033675 prediction 0.534839059583423 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9792952 chr17:9792953 synonymous SNV . 0 22 hm5C_associated_SNPs_105356 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0.7806735 2.22044604925031e-16 hm5C_site_58501 DeepMRMD:0.7806735;iRNA_m5C:2.22044604925031e-16 58502 chr14 31091504 31091504 1 + C A rs200600178 31091500 + 31091480 31091520 41 GTAAGGGCAGCCACGTCATCCCCCCGCTCCGCTCCCCAGCC GTAAGGGCAGCCACGTCATCCCCCAGCTCCGCTCCCCAGCC < 41bp 0.419659482141229 0.767419204332949 0.024822712 0.047186077 prediction 0.534838408665898 Functional Gain - SCFD1 ENSG00000092108 UTR5 Human protein_coding chr14:31091500 chr14:31091504 . . 0 25 hm5C_associated_SNPs_105357 0 0 0 0 0 Cytosol 0.500231643921328 0.500231834212731 0 3.80582806602803e-07 hm5C_site_58502 DeepMRMD:0;iRNA_m5C:3.80582806602803e-07 58503 chr6 33652420 33652420 1 + C G TGCT 33652419 + 33652399 33652439 41 CTGCAAAACTACCTCCAGAACCGGAAGTCCACCTCGCGGGG CTGCAAAACTACCTCCAGAACGGGAAGTCCACCTCGCGGGG < 41bp 0.554040527260017 0.821434150984485 0.92413044 0.9031584 prediction 0.534787247448937 Functional Gain - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33652419 chr6:33652420 nonsynonymous SNV 0.916 1 22 hm5C_associated_SNPs_105358 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_58503 DeepMRMD:0;iRNA_m5C:0 58504 chr3 150877801 150877801 1 + C A SKCM 150877797 + 150877777 150877817 41 CAGCCCTGGCCCCCCCGGCCCTGGCATGAGCCCCGTGCAGC CAGCCCTGGCCCCCCCGGCCCTGGAATGAGCCCCGTGCAGC < 41bp 0.377891024496992 0.767391021742067 0.58805394 0.8892697 prediction 0.534782043484135 Functional Gain - MED12L ENSG00000144893 CDS Human protein_coding chr3:150877797 chr3:150877801 synonymous SNV . 0 25 hm5C_associated_SNPs_105359 0 0 1 0 1 exosome 0.500231643914835 0.500231643921144 0.60243152 1.261746263026e-11 hm5C_site_58504 DeepMRMD:0.60243152;iRNA_m5C:1.261746263026e-11 58505 chrX 22291653 22291653 1 + C G OV 22291652 + 22291632 22291672 41 ACCATCTAAGCTATATTCCACCAGAACAGCACACCATGGTG ACCATCTAAGCTATATTCCACGAGAACAGCACACCATGGTG < 41bp 0.55129989160971 0.818688192782529 0.061823815 0.23651496 prediction 0.534776602345639 Functional Gain - ZNF645 ENSG00000175809 CDS Human protein_coding chrX:22291652 chrX:22291653 nonsynonymous SNV 0.007 2 22 hm5C_associated_SNPs_105360 0 0 0 0 0 unknown 0.500231643611501 0.500231643916052 0 6.09101435955495e-10 hm5C_site_58505 DeepMRMD:0;iRNA_m5C:6.09101435955495e-10 58506 chr1 205538285 205538285 1 + C A UCEC 205538281 + 205538261 205538301 41 TGGAGCGTCTTCTTCAGCTTCGGCCTGTGCATCGCCTTCCT TGGAGCGTCTTCTTCAGCTTCGGCATGTGCATCGCCTTCCT < 41bp 0.644871449223714 0.912253995616527 0.5140402 0.57336694 prediction 0.534765092785625 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205538281 chr1:205538285 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105361 0 0 0 0 0 Nucleus 0.50009635124744 0.500299543250142 0.11865348 0.000406384005404048 hm5C_site_58506 DeepMRMD:0.11865348;iRNA_m5C:0.000406384005404048 58507 chr10 35897387 35897387 1 + C A rs370286081 35897383 + 35897363 35897403 41 AGACAGCCCCGGGGCAGGCCCCACCGAGAGGCCGCCCAGGA AGACAGCCCCGGGGCAGGCCCCACAGAGAGGCCGCCCAGGA < 41bp 0.377983134219758 0.767382310112581 0.1582452 0.26095986 prediction 0.534764620225162 Functional Gain - GJD4 ENSG00000177291 CDS Human protein_coding chr10:35897383 chr10:35897387 synonymous SNV . 0 25 hm5C_associated_SNPs_105362 0 0 0 0 0 exosome 0.500231643972592 0.500231644315583 0 6.85981271786318e-10 hm5C_site_58507 DeepMRMD:0;iRNA_m5C:6.85981271786318e-10 58508 chr20 34526642 34526642 1 + C A SARC 34526638 + 34526618 34526658 41 GAAGCCGGGAGCATCCTGATCTGCCGCTGTGGTGCCAGCCT GAAGCCGGGAGCATCCTGATCTGCAGCTGTGGTGCCAGCCT < 41bp 0.343297681016041 0.767373399439585 0.14591819 0.54772955 prediction 0.534746798879171 Functional Gain - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34526638 chr20:34526642 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_105363 0 0 1 0 1 Nucleus 0.500231643501735 0.500231747831766 0.0954591 2.08660063227839e-07 hm5C_site_58508 DeepMRMD:0.0954591;iRNA_m5C:2.08660063227839e-07 58509 chr2 233899524 233899524 1 + C A LUSC 233899520 + 233899500 233899540 41 GCTGCTCTACACTCACCCCACACACTCCTGGCAGAGGGCCG GCTGCTCTACACTCACCCCACACAATCCTGGCAGAGGGCCG < 41bp 0.376823899189052 0.767371278822007 0.07157695 0.13232353 prediction 0.534742557644013 Functional Gain - NEU2 ENSG00000115488 CDS Human protein_coding chr2:233899520 chr2:233899524 nonsynonymous SNV 0.006 1 25 hm5C_associated_SNPs_105364 0 0 0 0 0 exosome 0.50023166523025 0.500231640173098 0 0 hm5C_site_58509 DeepMRMD:0;iRNA_m5C:0 58510 chr15 75043592 75043592 1 + C A rs17861157 75043588 + 75043568 75043608 41 CAGCAAGAAGGGGCCTAGAGCCAGCGGCAACCTCATCCCAC CAGCAAGAAGGGGCCTAGAGCCAGAGGCAACCTCATCCCAC < 41bp 0.365352488676653 0.767370367662272 0.8520632 0.89885783 prediction 0.534740735324544 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75043588 chr15:75043592 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105365 0 0 0 0 2 Nucleus 0.500231643920962 0.500231643921085 0.0935892599999999 2.4624746686186e-13 hm5C_site_58510 DeepMRMD:0.0935892599999999;iRNA_m5C:2.4624746686186e-13 58511 chr17 29325811 29325811 1 + C G BLCA 29325810 + 29325790 29325830 41 TGTGAGAGGTTTTCTACCAGCCAGGTCTTATGTTCCCAGGC TGTGAGAGGTTTTCTACCAGCGAGGTCTTATGTTCCCAGGC < 41bp 0.56867231048679 0.836042145667048 0.22990066 0.6849325 prediction 0.534739670360516 Functional Gain - RNF135 ENSG00000181481 CDS Human protein_coding chr17:29325810 chr17:29325811 nonsynonymous SNV 0.939 4 22 hm5C_associated_SNPs_105366 0 0 1 1 0 Ribosome 0.500231643939556 0.500231644072019 0.369865 2.64925636983548e-10 hm5C_site_58511 DeepMRMD:0.369865;iRNA_m5C:2.64925636983548e-10 58512 chr1 163039295 163039295 1 + T A LIHC 163039291 + 163039271 163039311 41 TAAGATGTGCAAAGGGCTTGCAGGTCTGCCGGCTTCTTGCT TAAGATGTGCAAAGGGCTTGCAGGACTGCCGGCTTCTTGCT < 41bp 0.572572357112101 0.839938523381029 0.73621094 0.8612168 prediction 0.534732332537857 Functional Gain - RGS4 ENSG00000117152 CDS Human protein_coding chr1:163039291 chr1:163039295 synonymous SNV . 0 25 hm5C_associated_SNPs_105367 0 0 0 0 1 exosome 0.500231642441409 0.500231643914369 0.25001172 2.94591950833478e-09 hm5C_site_58512 DeepMRMD:0.25001172;iRNA_m5C:2.94591950833478e-09 58513 chr19 53957988 53957988 1 + T A STAD 53957984 + 53957964 53958004 41 TGTTCCATGCAGGGACATTGCAAATACATGAAAGTCATCAC TGTTCCATGCAGGGACATTGCAAAAACATGAAAGTCATCAC < 41bp 0.484265335738135 0.767362593477014 0.3312254 0.46799737 prediction 0.534725186954027 Functional Gain - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53957984 chr19:53957988 . 0.000 0 25 hm5C_associated_SNPs_105368 0 0 0 0 1 unknown 0.500231593753318 0.500231643921092 0 1.0033554809219e-07 hm5C_site_58513 DeepMRMD:0;iRNA_m5C:1.0033554809219e-07 58514 chr14 21467913 21467913 1 + T A rs2234632 21467909 + 21467889 21467929 41 GCTTTTTATTAGGTCATCACCGGCTAGTCCTCAGACTCCTG GCTTTTTATTAGGTCATCACCGGCAAGTCCTCAGACTCCTG < 41bp 0.581932607421863 0.849292320063419 0.3169116 0.3741522 prediction 0.534719425283111 Functional Gain - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21467909 chr14:21467913 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105369 0 0 0 0 1 exosome 0.500231643921102 0.500231643922069 0 1.9337864642921e-12 hm5C_site_58514 DeepMRMD:0;iRNA_m5C:1.9337864642921e-12 58515 chr3 140406900 140406900 1 + C A LUSC 140406896 + 140406876 140406916 41 ACCAGATCGAGGACGGCATCCAGACCACCTACAGGCCTGAC ACCAGATCGAGGACGGCATCCAGAACACCTACAGGCCTGAC < 41bp 0.34870082970944 0.767355507170933 0.77964437 0.7698674 prediction 0.534711014341866 Functional Gain - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140406896 chr3:140406900 nonsynonymous SNV 0.198 0 25 hm5C_associated_SNPs_105370 0 0 0 0 0 exosome 0.500231662870095 0.500231643921867 0 0 hm5C_site_58515 DeepMRMD:0;iRNA_m5C:0 58516 chrX 15721240 15721240 1 + C G rs745992808 15721239 + 15721219 15721259 41 CAACATCAGGCCTGATTTCTCCAAGGCTCCCCTGGCCTACG CAACATCAGGCCTGATTTCTCGAAGGCTCCCCTGGCCTACG < 41bp 0.568198941673461 0.83555425647334 0.91255873 0.94095063 prediction 0.53471062959976 Functional Gain - CA5BP1 ENSG00000186312 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:15721239 chrX:15721240 . . 0 22 hm5C_associated_SNPs_105371 0 0 1 0 0 unknown 0.500231643921092 0.500231643921089 0.0567838000000001 0 hm5C_site_58516 DeepMRMD:0.0567838000000001;iRNA_m5C:0 58517 chr16 87731308 87731308 1 + C G rs532248465 87731307 + 87731287 87731327 41 ACACCACAGTGGGCCTGGTCCCAGGACAGGAATGCGGTTCA ACACCACAGTGGGCCTGGTCCGAGGACAGGAATGCGGTTCA < 41bp 0.512611654494625 0.779959231929966 0.420822 0.87977207 prediction 0.534695154870682 Functional Gain - JPH3 ENSG00000154118 UTR3 Human protein_coding chr16:87731307 chr16:87731308 . . 0 22 hm5C_associated_SNPs_105372 0 0 0 0 0 chromatin 0.500231643711941 0.50023164392072 0.75954414 4.17557766141385e-10 hm5C_site_58517 DeepMRMD:0.75954414;iRNA_m5C:4.17557766141385e-10 58518 chr14 93401371 93401371 1 + C G rs530828278 93401367 + 93401347 93401387 41 CTGCCCAAGCCCAGGCCACCCTATCGCCCCCTACGCGCCTT CTGCCCAAGCCCAGGCCACCCTATGGCCCCCTACGCGCCTT < 41bp 0.480085468305629 0.767342915118256 0.09804177 0.14180842 prediction 0.534685830236512 Functional Gain - CHGA ENSG00000100604 UTR3 Human protein_coding chr14:93401367 chr14:93401371 . . 0 25 hm5C_associated_SNPs_105373 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58518 DeepMRMD:0;iRNA_m5C:0 58519 chr19 35842879 35842879 1 + T G STAD 35842877 + 35842857 35842897 41 CTGTGTCACCTGGGTCTGGTCTTTGGGTTGGAGGCTCCAGG CTGTGTCACCTGGGTCTGGTCTGTGGGTTGGAGGCTCCAGG < 41bp 0.432081626941884 0.76734142525495 0.23519513 0.34978738 prediction 0.534682850509899 Functional Gain - FFAR1 ENSG00000126266 CDS Human protein_coding chr19:35842877 chr19:35842879 nonsynonymous SNV 0.015 2 23 hm5C_associated_SNPs_105374 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58519 DeepMRMD:0;iRNA_m5C:0 58520 chr14 62120422 62120422 1 + C G rs113167783 62120418 + 62120398 62120438 41 TCTTCACCCAATCCCACAGCCACACGTGCCTGCTTGCTCAC TCTTCACCCAATCCCACAGCCACAGGTGCCTGCTTGCTCAC < 41bp 0.523753037041201 0.791088715611274 0.7186717 0.8478979 prediction 0.534671357140147 Functional Gain - FLJ22447 ENSG00000232774 CDS Human lincRNA chr14:62120418 chr14:62120422 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105375 0 0 0 2 1 unknown 0.500231353569928 0.500185950034978 0.2584524 0 hm5C_site_58520 DeepMRMD:0.2584524;iRNA_m5C:0 58521 chr4 124319665 124319665 1 + C G rs571675258 124319661 + 124319641 124319681 41 TTGGCCCCCGGCCACCGCTTCGGCCTAGGTGAGTGTGTGCG TTGGCCCCCGGCCACCGCTTCGGCGTAGGTGAGTGTGTGCG < 41bp 0.53105470185426 0.798378843552037 0.45899484 0.8389437 prediction 0.534648283395554 Functional Gain - SPRY1 ENSG00000164056 UTR5 Human protein_coding chr4:124319661 chr4:124319665 . . 0 25 hm5C_associated_SNPs_105376 0 0 1 0 1 nucleus 0.500231643921092 0.500231636874553 0.6778874 0 hm5C_site_58521 DeepMRMD:0.6778874;iRNA_m5C:0 58522 chr3 40433581 40433581 1 + A T HNSC 40433585 - 40433565 40433605 41 CTGGATGACAGTGATACTCACAAGTACCACAATACTCACAA CTGGATGACAGTGATACTCACAAGAACCACAATACTCACAA < 41bp 0.564003190943728 0.831326993512507 0.09927589 0.103465915 prediction 0.534647605137559 Functional Gain - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40433585 chr3:40433581 synonymous SNV . 0 25 hm5C_associated_SNPs_105377 0 0 0 0 0 chromatin 0.500278863875791 0.500231703497637 0 0 hm5C_site_58522 DeepMRMD:0;iRNA_m5C:0 58523 chr2 233404775 233404775 1 + C A THCA 233404774 + 233404754 233404794 41 CTACGACCCCAACCTGCGGCCCGCGGAACGAGACTCGGATG CTACGACCCCAACCTGCGGCCAGCGGAACGAGACTCGGATG < 41bp 0.500303186720484 0.767625764343723 0.3813492 0.8989874 prediction 0.534645155246479 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233404774 chr2:233404775 synonymous SNV . 0 22 hm5C_associated_SNPs_105378 0 0 0 0 2 chromatin 0.500224436444309 0.500231659432958 0.7979748 1.44459772981609e-05 hm5C_site_58523 DeepMRMD:0.7979748;iRNA_m5C:1.44459772981609e-05 58524 chr3 128780893 128780893 1 + C G HNSC 128780889 + 128780869 128780909 41 TGCGCCTCTGGCTGGAGGACCGCACGCCCGAGGCCCTGCTG TGCGCCTCTGGCTGGAGGACCGCAGGCCCGAGGCCCTGCTG < 41bp 0.531092795802561 0.7984101959946 0.1590777 0.66051316 prediction 0.534634800384077 Functional Gain - GP9 ENSG00000169704 CDS Human protein_coding chr3:128780889 chr3:128780893 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_105379 0 0 0 0 0 Endoplasmic reticulum 0.500231643899847 0.500231643921093 0.32102632 4.24915658214786e-11 hm5C_site_58524 DeepMRMD:0.32102632;iRNA_m5C:4.24915658214786e-11 58525 chr15 96875647 96875647 1 + C G PRAD 96875643 + 96875623 96875663 41 GAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAA GAGGGCTGCAAGAGCTTCTTCAAGGGCAGCGTGCGGAGGAA < 41bp 0.500971787915077 0.768285426776538 0.33465457 0.4548043 prediction 0.534627277722922 Functional Gain - NR2F2 ENSG00000185551 CDS Human protein_coding chr15:96875643 chr15:96875647 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_105380 0 0 1 0 0 Cytoplasm 0.500231643921093 0.500231643921099 0 1.15463194561016e-14 hm5C_site_58525 DeepMRMD:0;iRNA_m5C:1.15463194561016e-14 58526 chr1 41483537 41483537 1 + C A rs150541088 41483533 + 41483513 41483553 41 GGAAGGCGCACACGTAGCGCCGCACGTGGTGCTTGAAGGCC GGAAGGCGCACACGTAGCGCCGCAAGTGGTGCTTGAAGGCC < 41bp 0.374341081102986 0.767313448728291 0.088701636 0.13354674 prediction 0.534626897456581 Functional Gain - SLFNL1 ENSG00000171790 CDS Human protein_coding chr1:41483533 chr1:41483537 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_105381 0 0 1 0 0 Endoplasmic reticulum 0.500231625725082 0.500231643921093 0 3.63920211743363e-08 hm5C_site_58526 DeepMRMD:0;iRNA_m5C:3.63920211743363e-08 58527 chr12 53448212 53448212 1 + G C LUSC 53448213 - 53448193 53448233 41 CCCCTCACCAGGTACTTGTCCCGGTGCTTGGATTGCAGCAC CCCCTCACCAGGTACTTGTCCGGGTGCTTGGATTGCAGCAC < 41bp 0.560327621997705 0.827639163878211 0.8906957 0.9256567 prediction 0.534623083761013 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53448213 chr12:53448212 nonsynonymous SNV 0.957 2 22 hm5C_associated_SNPs_105382 0 0 0 0 0 cytosol 0.500231643922095 0.500231643921089 0.069922 0 hm5C_site_58527 DeepMRMD:0.069922;iRNA_m5C:0 58528 chr1 229795041 229795041 1 + C G LUSC 229795037 + 229795017 229795057 41 TGAAGGAGAGAAAAGATATACGGCCTAAGGCTATGGGACAG TGAAGGAGAGAAAAGATATACGGCGTAAGGCTATGGGACAG < 41bp 0.504756283063482 0.772066404620011 0.07102269 0.22419599 prediction 0.534620243113059 Functional Gain - URB2 ENSG00000135763 CDS Human protein_coding chr1:229795037 chr1:229795041 synonymous SNV . 0 25 hm5C_associated_SNPs_105383 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_58528 DeepMRMD:0;iRNA_m5C:0 58529 chr20 1115619 1115619 1 + C A rs73071642 1115615 + 1115595 1115635 41 CCCCCCTCACCCAGGTCCAGCAGGCGGCCTGTTCCCCCACT CCCCCCTCACCCAGGTCCAGCAGGAGGCCTGTTCCCCCACT < 41bp 0.415726540332106 0.767302144253893 0.63450074 0.83445805 prediction 0.534604288507786 Functional Gain - PSMF1 ENSG00000125818 intronic Human protein_coding chr20:1115615 chr20:1115619 . . 0 25 hm5C_associated_SNPs_105384 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921093 0.39991462 2.22044604925031e-16 hm5C_site_58529 DeepMRMD:0.39991462;iRNA_m5C:2.22044604925031e-16 58530 chr3 57303633 57303633 1 + G C MESO 57303637 - 57303617 57303657 41 CTACTGCTAAGGACAACAAACTGCCCCTCACTACTGGCTTG CTACTGCTAAGGACAACAAACTGCGCCTCACTACTGGCTTG < 41bp 0.5198834233591 0.787182444648679 0.19814837 0.84426486 prediction 0.534598042579159 Functional Gain - APPL1 ENSG00000157500 CDS Human protein_coding chr3:57303637 chr3:57303633 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_105385 0 0 0 0 1 Cytosol 0.50023132566735 0.500231239856546 0.68852972 0 hm5C_site_58530 DeepMRMD:0.68852972;iRNA_m5C:0 58531 chr8 120428631 120428631 1 + C A rs543998636 120428627 + 120428607 120428647 41 CCTCCTCCCTGCACTGCAGCCAACCGGCTTGTGCGCGTCCC CCTCCTCCCTGCACTGCAGCCAACAGGCTTGTGCGCGTCCC < 41bp 0.613032452653895 0.880328465416706 0.386743 0.4170156 prediction 0.534592025525622 Functional Gain - NOV ENSG00000136999 UTR5 Human protein_coding chr8:120428627 chr8:120428631 . . 0 25 hm5C_associated_SNPs_105386 0 0 0 0 0 exosome 0.500231643515022 0.500231643912919 0 7.95792987062782e-10 hm5C_site_58531 DeepMRMD:0;iRNA_m5C:7.95792987062782e-10 58532 chr17 42786723 42786723 1 + C G LAML 42786719 + 42786699 42786739 41 CCATGGCTGAGAGTAGGCTCCGGGCCCCGGACCTAGGTGGG CCATGGCTGAGAGTAGGCTCCGGGGCCCGGACCTAGGTGGG < 41bp 0.536287483522316 0.803577999821672 0.8682625 0.8981986 prediction 0.534581032598712 Functional Gain - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42786719 chr17:42786723 nonsynonymous SNV 0.906 1 25 hm5C_associated_SNPs_105387 0 0 1 0 2 chromatin 0.500231643921026 0.500231643921082 0.0598721999999998 1.12354570092066e-13 hm5C_site_58532 DeepMRMD:0.0598721999999998;iRNA_m5C:1.12354570092066e-13 58533 chr17 40947945 40947945 1 + G C HNSC 40947949 - 40947929 40947969 41 TGCTGTAGGAGTAGTTCATCCACACTGGGCTGGGATGGCTC TGCTGTAGGAGTAGTTCATCCACAGTGGGCTGGGATGGCTC < 41bp 0.525726959123081 0.793008459282039 0.15930721 0.23532397 prediction 0.534563000317914 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40947949 chr17:40947945 nonsynonymous SNV 0.984 1 25 hm5C_associated_SNPs_105388 0 0 0 0 0 chromatin 0.500237226837335 0.500231950113932 0 0 hm5C_site_58533 DeepMRMD:0;iRNA_m5C:0 58534 chr3 32859875 32859875 1 + C G rs554206017 32859874 + 32859854 32859894 41 CGACCAGAAAGTAGTGCTAGCCGAGGCGGCGGGTATGGACG CGACCAGAAAGTAGTGCTAGCGGAGGCGGCGGGTATGGACG < 41bp 0.470844737471634 0.767275165078897 0.7565239 0.9125534 prediction 0.534550330157793 Functional Gain - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32859874 chr3:32859875 synonymous SNV . 0 22 hm5C_associated_SNPs_105389 0 0 1 0 0 cytosol 0.500231643964223 0.500231643921223 0.312059 0 hm5C_site_58534 DeepMRMD:0.312059;iRNA_m5C:0 58535 chr7 116557939 116557939 1 + C G rs3173936 116557938 + 116557918 116557958 41 ATAAGATGAACATTGCATGACCGGATCATTTTAGTGTCTTT ATAAGATGAACATTGCATGACGGGATCATTTTAGTGTCTTT < 41bp 0.527952861792126 0.795205679782195 0.037799478 0.21820754 prediction 0.534505635980139 Functional Gain - CAPZA2 ENSG00000198898 UTR3 Human protein_coding chr7:116557938 chr7:116557939 . . 0 22 hm5C_associated_SNPs_105390 0 0 1 0 0 Ribosome 0.50023164393102 0.500231643919218 0 0 hm5C_site_58535 DeepMRMD:0;iRNA_m5C:0 58536 chr7 71177039 71177039 1 + C A HNSC 71177035 + 71177015 71177055 41 ATGAACAAGGGCACGGGACGCTGCCTGGAGGTGGAGAACCG ATGAACAAGGGCACGGGACGCTGCATGGAGGTGGAGAACCG < 41bp 0.390754817821205 0.767242868288235 0.176624 0.47948763 prediction 0.534485736576469 Functional Gain - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:71177035 chr7:71177039 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105391 0 0 0 0 1 unknown 0.500231643924053 0.500231618609084 0 0 hm5C_site_58536 DeepMRMD:0;iRNA_m5C:0 58537 chr4 169798978 169798978 1 + C A rs186421929 169798974 + 169798954 169798994 41 CGCGCAGCGCGCCGCCCTCGCCCCCCTTCCCGCCGCCGCCC CGCGCAGCGCGCCGCCCTCGCCCCACTTCCCGCCGCCGCCC < 41bp 0.407967350295605 0.767241550769622 0.08650741 0.07567045 prediction 0.534483101539243 Functional Gain - PALLD ENSG00000129116 CDS Human protein_coding chr4:169798974 chr4:169798978 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105392 0 0 0 0 0 Cytosol 0.500231643921783 0.500231644550226 0 1.25688748298103e-09 hm5C_site_58537 DeepMRMD:0;iRNA_m5C:1.25688748298103e-09 58538 chr22 29837559 29837559 1 + C G HNSC 29837555 + 29837535 29837575 41 TATGACCTTGGATGCCGACACAGCCAACAACTTCCTCCTCA TATGACCTTGGATGCCGACACAGCGAACAACTTCCTCCTCA < 41bp 0.551312418649885 0.818550595059998 0.09239033 0.41052195 prediction 0.534476352820227 Functional Gain - RFPL1 ENSG00000128250 CDS Human protein_coding chr22:29837555 chr22:29837559 synonymous SNV . 0 25 hm5C_associated_SNPs_105393 0 0 0 0 1 exosome 0.500231643921093 0.500231644377357 0 9.12527831076204e-10 hm5C_site_58538 DeepMRMD:0;iRNA_m5C:9.12527831076204e-10 58539 chr1 15793996 15793996 1 + T G SKCM 15793994 + 15793974 15794014 41 TACTACCACAAGCCCTCCGTCTTCACGCGGGTCTCCAATTA TACTACCACAAGCCCTCCGTCTGCACGCGGGTCTCCAATTA < 41bp 0.444741268155939 0.767236844765515 0.15711254 0.11406705 prediction 0.534473689531029 Functional Gain - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15793994 chr1:15793996 nonsynonymous SNV 0.181 4 23 hm5C_associated_SNPs_105394 0 0 0 0 1 unknown 0.50023164397366 0.500231665260537 0 4.25737527454118e-08 hm5C_site_58539 DeepMRMD:0;iRNA_m5C:4.25737527454118e-08 58540 chr19 49132655 49132655 1 + C G rs151205532 49132651 + 49132631 49132671 41 GCTGGGCACCCCGCTGCCCCCAGACTGGGTGACGCTGGAGG GCTGGGCACCCCGCTGCCCCCAGAGTGGGTGACGCTGGAGG < 41bp 0.519976462451186 0.787208434752176 0.52121174 0.85737824 prediction 0.534463944601978 Functional Gain - SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49132651 chr19:49132655 nonsynonymous SNV 0.852 0 25 hm5C_associated_SNPs_105395 0 0 1 0 0 chromatin 0.50023167130173 0.500231643921095 0.672333 0 hm5C_site_58540 DeepMRMD:0.672333;iRNA_m5C:0 58541 chr7 142829225 142829225 1 + C G LUAD 142829221 + 142829201 142829241 41 TTCTCCAGCATGCGCTTGCTCCAGCTCCTGTTCAGGGCCAG TTCTCCAGCATGCGCTTGCTCCAGGTCCTGTTCAGGGCCAG < 41bp 0.529526968685604 0.796756912849184 0.52036464 0.8840209 prediction 0.534459888327161 Functional Gain - PIP ENSG00000159763 CDS Human protein_coding chr7:142829221 chr7:142829225 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_105396 0 0 0 0 1 exosome 0.500231574200755 0.500231676414023 0.72731252 2.04426536365432e-07 hm5C_site_58541 DeepMRMD:0.72731252;iRNA_m5C:2.04426536365432e-07 58542 chr19 54378144 54378144 1 + C G rs532899262 54378140 + 54378120 54378160 41 CCTGGGTTCAAGCGATTCTCCTGCCCCAGCCTCCCAAGTAG CCTGGGTTCAAGCGATTCTCCTGCGCCAGCCTCCCAAGTAG < 41bp 0.549275213805146 0.816493575410545 0.085018516 0.12687457 prediction 0.534436723210798 Functional Gain - MYADM ENSG00000232220 ncRNA_intronic Human antisense chr19:54378140 chr19:54378144 . . 0 25 hm5C_associated_SNPs_105397 0 0 1 0 0 Nucleus 0.500231340846821 0.500231643919269 0 6.06144894943483e-07 hm5C_site_58542 DeepMRMD:0;iRNA_m5C:6.06144894943483e-07 58543 chr12 69140221 69140221 1 + C G rs61743809 69140217 + 69140197 69140237 41 ATCGCCGCCGGGCTCCTGTTCAACCTGCTGGTGTCCATCTG ATCGCCGCCGGGCTCCTGTTCAACGTGCTGGTGTCCATCTG < 41bp 0.488882767318442 0.767214996734074 0.21484885 0.4100262 prediction 0.534429993468148 Functional Gain - SLC35E3 ENSG00000175782 CDS Human protein_coding chr12:69140217 chr12:69140221 nonsynonymous SNV 0.930 0 25 hm5C_associated_SNPs_105398 0 0 1 0 0 nucleolus 0.500231643921092 0.500231643921025 0 0 hm5C_site_58543 DeepMRMD:0;iRNA_m5C:0 58544 chr20 44571836 44571836 1 + C A OV 44571832 + 44571812 44571852 41 GTTGCCCAGCAACTGTGAACCAGTCGTGTCACCTTCCATGT GTTGCCCAGCAACTGTGAACCAGTAGTGTCACCTTCCATGT < 41bp 0.355829498158391 0.76720122908953 0.15749973 0.15561005 prediction 0.53440245817906 Functional Gain - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44571832 chr20:44571836 synonymous SNV . 0 25 hm5C_associated_SNPs_105399 0 0 1 0 1 chromatin 0.500231599736588 0.50023164380202 0 8.81308643840839e-08 hm5C_site_58544 DeepMRMD:0;iRNA_m5C:8.81308643840839e-08 58545 chr11 123489427 123489427 1 + T C UCEC 123489425 + 123489405 123489445 41 GTGCTGCTGGTCATCCTTAACATGATGCTCTTCTACAAACT GTGCTGCTGGTCATCCTTAACACGATGCTCTTCTACAAACT < 41bp 0.537468102188976 0.804656481260612 0.06803596 0.051885843 prediction 0.534376758143272 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123489425 chr11:123489427 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105400 0 0 0 0 2 Cytosol 0.500231894362127 0.500234743605757 0 5.69848726006406e-06 hm5C_site_58545 DeepMRMD:0;iRNA_m5C:5.69848726006406e-06 58546 chr1 4715137 4715137 1 + C G rs76277841 4715136 + 4715116 4715156 41 GAGGGCGAAGCCGCGGCTCCCCAGCCCTTTGCTGCGCCGCG GAGGGCGAAGCCGCGGCTCCCGAGCCCTTTGCTGCGCCGCG < 41bp 0.516642671804151 0.78382188776218 0.33978787 0.88570124 prediction 0.534358431916059 Functional Gain - AJAP1 ENSG00000196581 UTR5 Human protein_coding chr1:4715136 chr1:4715137 . . 0 22 hm5C_associated_SNPs_105401 0 0 0 0 0 exosome 0.500231643920691 0.500231643920933 0.77140248 4.82724971107018e-13 hm5C_site_58546 DeepMRMD:0.77140248;iRNA_m5C:4.82724971107018e-13 58547 chr19 54416252 54416252 1 + C A LUSC 54416248 + 54416228 54416268 41 CCGAGGTCAAGATGGCCCTGCACGCCGGCCTCTGGCGAGTC CCGAGGTCAAGATGGCCCTGCACGACGGCCTCTGGCGAGTC < 41bp 0.360268496655102 0.767174021787681 0.06338978 0.12141499 prediction 0.534348043575362 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54416248 chr19:54416252 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_105402 0 0 0 0 1 unknown 0.500231644036522 0.500231643926079 0 0 hm5C_site_58547 DeepMRMD:0;iRNA_m5C:0 58548 chr22 42043068 42043068 1 + C G UCEC 42043064 + 42043044 42043084 41 TACAGGCGGTTTGCTTCTGCCTAGCGATACCAAGAGGTCTC TACAGGCGGTTTGCTTCTGCCTAGGGATACCAAGAGGTCTC < 41bp 0.504778209310859 0.771949831199214 0.0052987635 0.030353963 prediction 0.534343243776708 Functional Gain - XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42043064 chr22:42043068 nonsynonymous SNV 0.728 4 25 hm5C_associated_SNPs_105403 0 0 1 0 1 Cytosol 0.500231643939343 0.500231644727601 0 1.57651602883391e-09 hm5C_site_58548 DeepMRMD:0;iRNA_m5C:1.57651602883391e-09 58549 chr2 233245981 233245981 1 + C G rs548731032 233245980 + 233245960 233246000 41 GGGCTGGCCCCTGGCAAGGCCCGGGACAGGAAGGCCTACAC GGGCTGGCCCCTGGCAAGGCCGGGGACAGGAAGGCCTACAC < 41bp 0.578839024445287 0.846008211199404 0.4594517 0.89145464 prediction 0.534338373508232 Functional Gain - ALPP ENSG00000163283 CDS Human protein_coding chr2:233245980 chr2:233245981 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_105404 0 0 0 0 2 Endoplasmic reticulum 0.500231643908742 0.500231643925637 0.78290928 3.37900818436765e-11 hm5C_site_58549 DeepMRMD:0.78290928;iRNA_m5C:3.37900818436765e-11 58550 chr1 2433793 2433793 1 + C G rs566042621 2433792 + 2433772 2433812 41 CGATGTGGTGCCCCCCGGGCCCGGACCTGCTCCGGAAGCCC CGATGTGGTGCCCCCCGGGCCGGGACCTGCTCCGGAAGCCC < 41bp 0.561013142669433 0.828181312894928 0.20203215 0.45180386 prediction 0.534336340450989 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2433792 chr1:2433793 synonymous SNV . 0 22 hm5C_associated_SNPs_105405 0 0 0 0 1 nucleus 0.500231643871577 0.500231643907292 0 7.14313053151727e-11 hm5C_site_58550 DeepMRMD:0;iRNA_m5C:7.14313053151727e-11 58551 chrX 15794942 15794942 1 + T A SKCM 15794938 + 15794918 15794958 41 CTGACTACCCCACCCCTCTCCGAGTCTGTCACCTGGATCAT CTGACTACCCCACCCCTCTCCGAGACTGTCACCTGGATCAT < 41bp 0.441753025415345 0.767167511411169 0.85779345 0.86573803 prediction 0.534335022822339 Functional Gain - CA5B ENSG00000169239 CDS Human protein_coding chrX:15794938 chrX:15794942 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_105406 0 0 1 0 1 Nucleus 0.500231643924604 0.500231643934365 0.0158891600000002 1.95223837096137e-11 hm5C_site_58551 DeepMRMD:0.0158891600000002;iRNA_m5C:1.95223837096137e-11 58552 chr16 14755875 14755875 1 + C A LUSC 14755871 + 14755851 14755891 41 CTACCTTTCATCCACACCATCTGCCCTCTGCAAGAAGACAG CTACCTTTCATCCACACCATCTGCACTCTGCAAGAAGACAG < 41bp 0.33652236979827 0.767158600380114 0.09487286 0.110673875 prediction 0.534317200760229 Functional Gain - BFAR ENSG00000103429 CDS Human protein_coding chr16:14755871 chr16:14755875 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_105407 0 0 1 0 1 Ribosome 0.500231655554313 0.500232336026559 0 1.36094449310065e-06 hm5C_site_58552 DeepMRMD:0;iRNA_m5C:1.36094449310065e-06 58553 chr4 189060940 189060940 1 + C G LUAD 189060936 + 189060916 189060956 41 CGAGCGTCTGGGGAGGCTGGCCAGCATCGCCAGGCAGCTCC CGAGCGTCTGGGGAGGCTGGCCAGGATCGCCAGGCAGCTCC < 41bp 0.475071845245788 0.767151014344931 0.75066257 0.90302825 prediction 0.534302028689861 Functional Gain - TRIML1 ENSG00000184108 CDS Human protein_coding chr4:189060936 chr4:189060940 nonsynonymous SNV 0.083 0 25 hm5C_associated_SNPs_105408 0 0 0 0 0 nucleus 0.500231643921172 0.500231643917475 0.30473136 0 hm5C_site_58553 DeepMRMD:0.30473136;iRNA_m5C:0 58554 chr5 140559122 140559122 1 + T A UCEC 140559118 + 140559098 140559138 41 CAGGATCCGCACCTGCCCCTCGCCTCCCTGGTCTCCATCAA CAGGATCCGCACCTGCCCCTCGCCACCCTGGTCTCCATCAA < 41bp 0.439959114962968 0.767150183434685 0.0480707 0.078553826 prediction 0.534300366869371 Functional Gain - PCDHB8 ENSG00000120322 CDS Human protein_coding chr5:140559118 chr5:140559122 nonsynonymous SNV 0.108 3 25 hm5C_associated_SNPs_105409 0 0 0 0 0 exosome 0.500231643921533 0.500231643922498 0 1.9284573937739e-12 hm5C_site_58554 DeepMRMD:0;iRNA_m5C:1.9284573937739e-12 58555 chr10 13687075 13687075 1 + G T rs567837967 13687079 - 13687059 13687099 41 GAGTCGAGCTGGGGCACACACACACCTGGCCGGGACCCGGC GAGTCGAGCTGGGGCACACACACAACTGGCCGGGACCCGGC < 41bp 0.478245727093415 0.767140119413064 0.13504657 0.19158942 prediction 0.534280238826128 Functional Gain - FRMD4A ENSG00000151474 UTR3 Human protein_coding chr10:13687079 chr10:13687075 . . 0 25 hm5C_associated_SNPs_105410 0 0 1 0 0 Nucleus 0.500231644165826 0.500231643921092 0 0 hm5C_site_58555 DeepMRMD:0;iRNA_m5C:0 58556 chr5 140559020 140559020 1 + C G LUAD 140559016 + 140558996 140559036 41 GTCCGCGAGAACAACAGCCCCGCCCTGCACATCGGCAGCGT GTCCGCGAGAACAACAGCCCCGCCGTGCACATCGGCAGCGT < 41bp 0.490921555157918 0.767136691179051 0.033233583 0.120722264 prediction 0.534273382358103 Functional Gain - PCDHB8 ENSG00000120322 CDS Human protein_coding chr5:140559016 chr5:140559020 nonsynonymous SNV 0.979 2 25 hm5C_associated_SNPs_105411 0 0 0 0 0 exosome 0.500231631161832 0.500231554431542 0 0 hm5C_site_58556 DeepMRMD:0;iRNA_m5C:0 58557 chr10 105138066 105138066 1 + T C COAD 105138064 + 105138044 105138084 41 AGTCTTACCAAAAAGGAACACATGAAAGGGAATGAGACCAT AGTCTTACCAAAAAGGAACACACGAAAGGGAATGAGACCAT < 41bp 0.485344644142288 0.767135789908687 0.24928737 0.12766105 prediction 0.534271579817375 Functional Gain - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105138064 chr10:105138066 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105412 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921093 0 4.44089209850063e-16 hm5C_site_58557 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 58558 chr19 45540703 45540703 1 + C A HNSC 45540699 + 45540679 45540719 41 GTCAGCCCTGCTGCCAGACCCTGACTTCTTCTCTGGCACCG GTCAGCCCTGCTGCCAGACCCTGAATTCTTCTCTGGCACCG < 41bp 0.643178933927653 0.910308549748425 0.056697518 0.16284183 prediction 0.534259231641543 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45540699 chr19:45540703 nonsynonymous SNV 0.420 2 25 hm5C_associated_SNPs_105413 0 0 0 0 1 Cytosol 0.500231642733663 0.500231644157592 0 2.84785750537253e-09 hm5C_site_58558 DeepMRMD:0;iRNA_m5C:2.84785750537253e-09 58559 chr4 7774504 7774504 1 + C G rs60282676 7774500 + 7774480 7774520 41 TGGGTGCACTGGCCCTCGGCCACGCAAGGCCGCGCCAGCCT TGGGTGCACTGGCCCTCGGCCACGGAAGGCCGCGCCAGCCT < 41bp 0.535123991034434 0.802227954774717 0.45491594 0.72907615 prediction 0.534207927480565 Functional Gain - AFAP1-AS1 ENSG00000272620 ncRNA_exonic Human antisense chr4:7774500 chr4:7774504 . . 0 25 hm5C_associated_SNPs_105414 0 0 1 0 0 unknown 0.500231643921092 0.500231643373748 0.4581523 0 hm5C_site_58559 DeepMRMD:0.4581523;iRNA_m5C:0 58560 chr1 205240255 205240255 1 + C A HNSC 205240251 + 205240231 205240271 41 CTCTCTCCCTCCGCCAGGTACGAGCGGCTGGAGGAGCAGCT CTCTCTCCCTCCGCCAGGTACGAGAGGCTGGAGGAGCAGCT < 41bp 0.366139341345271 0.767099971278053 0.8903644 0.91354 prediction 0.534199942556105 Functional Gain - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205240251 chr1:205240255 synonymous SNV . 0 25 hm5C_associated_SNPs_105415 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921377 0.0463512000000001 5.6887827781793e-13 hm5C_site_58560 DeepMRMD:0.0463512000000001;iRNA_m5C:5.6887827781793e-13 58561 chr4 70152499 70152499 1 + T A rs41292341 70152495 + 70152475 70152515 41 GGAGGAATTTGTACAGAGCTCTGGTGAAAATGGTGTTGTGG GGAGGAATTTGTACAGAGCTCTGGAGAAAATGGTGTTGTGG < 41bp 0.569148933960611 0.836246033984067 0.47912866 0.7555219 prediction 0.534194200046914 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70152495 chr4:70152499 synonymous SNV . 0 25 hm5C_associated_SNPs_105416 0 0 0 0 1 exosome 0.500231643921398 0.50023164392147 0.5110438 1.4432899320127e-13 hm5C_site_58561 DeepMRMD:0.5110438;iRNA_m5C:1.4432899320127e-13 58562 chr19 549779 549779 1 + C G LIHC 549775 + 549755 549795 41 GTCCTGGATCAGGAAGGTCACCGGCCGATCGGCCTGATGCC GTCCTGGATCAGGAAGGTCACCGGGCGATCGGCCTGATGCC < 41bp 0.520451252871681 0.787546831167337 0.435888 0.88877493 prediction 0.534191156591312 Functional Gain - GZMM ENSG00000197540 CDS Human protein_coding chr19:549775 chr19:549779 synonymous SNV . 0 25 hm5C_associated_SNPs_105417 0 0 0 0 0 exosome 0.50023163932395 0.5002316441288 0.77754986 9.6097001467399e-09 hm5C_site_58562 DeepMRMD:0.77754986;iRNA_m5C:9.6097001467399e-09 58563 chr1 11724180 11724180 1 + C A rs537102623 11724176 + 11724156 11724196 41 TAGTGCGGAGGTCCGGGGAGCGGCCGCGCGTTCGGGAGCTT TAGTGCGGAGGTCCGGGGAGCGGCAGCGCGTTCGGGAGCTT < 41bp 0.586237440025795 0.853314168750351 0.49310744 0.83113647 prediction 0.534153457449112 Functional Gain - FBXO6 ENSG00000116663;ENSG00000132879 upstream;downstream Human other chr1:11724176 chr1:11724180 . . 0 25 hm5C_associated_SNPs_105418 0 0 0 0 0 Ribosome 0.500231643920906 0.500231645613326 0.66227294 3.384840185916e-09 hm5C_site_58563 DeepMRMD:0.66227294;iRNA_m5C:3.384840185916e-09 58564 chr7 2701789 2701789 1 + C G rs115868877 2701788 + 2701768 2701808 41 GTTCACAGGCACGGCTGGGGCCGCTCTGTGCTGGCGCCTGC GTTCACAGGCACGGCTGGGGCGGCTCTGTGCTGGCGCCTGC < 41bp 0.55767163950632 0.824738892858827 0.2897415 0.47518545 prediction 0.534134506705014 Functional Gain - TTYH3 ENSG00000136295 UTR3 Human protein_coding chr7:2701788 chr7:2701789 . . 0 22 hm5C_associated_SNPs_105419 0 0 1 0 0 Ribosome 0.500232152702846 0.500862296840607 0 0.00126028827552216 hm5C_site_58564 DeepMRMD:0;iRNA_m5C:0.00126028827552216 58565 chr19 55333103 55333103 1 + C A CESC 55333099 + 55333079 55333119 41 AGCGTGACCTTGTCCTGTAGCTCCCGGAGCTCCTATGACAT AGCGTGACCTTGTCCTGTAGCTCCAGGAGCTCCTATGACAT < 41bp 0.34467529523222 0.767066244401588 0.05000171 0.9228438 prediction 0.534132488803176 Functional Gain - KIR3DL1 ENSG00000167633 CDS Human protein_coding chr19:55333099 chr19:55333103 synonymous SNV . 0 25 hm5C_associated_SNPs_105420 0 0 0 0 1 exosome 0.500231644459709 0.50023164392117 0.8456876 0 hm5C_site_58565 DeepMRMD:0.8456876;iRNA_m5C:0 58566 chr16 90172858 90172858 1 + C A rs531984871 90172854 + 90172834 90172874 41 CCTCAAGAGGCGCCCGGGTTCCGGCACAGACGGCCTGCGGC CCTCAAGAGGCGCCCGGGTTCCGGAACAGACGGCCTGCGGC < 41bp 0.606545201075117 0.873610604273442 0.86151135 0.90298116 prediction 0.534130806396649 Functional Gain - FAM157B;FAM157C ENSG00000260528 ncRNA_exonic Human lincRNA chr16:90172854 chr16:90172858 . . 0 25 hm5C_associated_SNPs_105421 0 0 0 0 0 unknown 0.50023164392969 0.500231643921092 0.0829396199999999 0 hm5C_site_58566 DeepMRMD:0.0829396199999999;iRNA_m5C:0 58567 chr10 77167892 77167892 1 + C G rs570070537 77167891 + 77167871 77167911 41 GCGGCGCGCTCGGCCCCGGCCCTGAGAGGCTGCGCGGGTGG GCGGCGCGCTCGGCCCCGGCCGTGAGAGGCTGCGCGGGTGG < 41bp 0.546755049864675 0.813819657400579 0.078160495 0.32161945 prediction 0.534129215071808 Functional Gain - ZNF503-AS2 ENSG00000237149 ncRNA_exonic Human antisense chr10:77167891 chr10:77167892 . . 0 22 hm5C_associated_SNPs_105422 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_58567 DeepMRMD:0;iRNA_m5C:0 58568 chr12 111342496 111342496 1 + C A MESO 111342492 + 111342472 111342512 41 GAGATCCCGCCACCCTTCATCAACCCTTTCTGGGGTGGCTC GAGATCCCGCCACCCTTCATCAACACTTTCTGGGGTGGCTC < 41bp 0.348732917390228 0.76704972717524 0.31867337 0.43787786 prediction 0.53409945435048 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111342492 chr12:111342496 nonsynonymous SNV 0.794 3 25 hm5C_associated_SNPs_105423 0 0 0 0 1 exosome 0.500231900465281 0.500230557235438 0 0 hm5C_site_58568 DeepMRMD:0;iRNA_m5C:0 58569 chr10 81371626 81371626 1 + C A UCEC 81371622 + 81371602 81371642 41 CCTCAACCTCATCTTGATGGCAGCCTCTGGTGCTGTGTGCG CCTCAACCTCATCTTGATGGCAGCATCTGGTGCTGTGTGCG < 41bp 0.376922810663613 0.767048276307403 0.15720335 0.20429623 prediction 0.534096552614806 Functional Gain - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81371622 chr10:81371626 synonymous SNV . 0 25 hm5C_associated_SNPs_105424 0 0 0 0 1 unknown 0.500231643764709 0.500231647724937 0 7.92045695696686e-09 hm5C_site_58569 DeepMRMD:0;iRNA_m5C:7.92045695696686e-09 58570 chr1 210027723 210027723 1 + T A rs2205984 210027719 + 210027699 210027739 41 CTTCTCACAGCTGGCTGCACCACGTGCAGTGTTCAAAAAAC CTTCTCACAGCTGGCTGCACCACGAGCAGTGTTCAAAAAAC < 41bp 0.514135331539583 0.781177041947291 0.215399 0.27469242 prediction 0.534083420815417 Functional Gain - DIEXF ENSG00000117597 UTR3 Human protein_coding chr1:210027719 chr1:210027723 . . 0 25 hm5C_associated_SNPs_105425 0 0 0 0 0 Cytosol 0.500231463414367 0.500229527434311 0 0 hm5C_site_58570 DeepMRMD:0;iRNA_m5C:0 58571 chr19 55047064 55047064 1 + C A LGG 55047060 + 55047040 55047080 41 CTGTGGTTGTTTCAGTCACTCCCGCTATGAGTGGTCGGCTC CTGTGGTTGTTTCAGTCACTCCCGATATGAGTGGTCGGCTC < 41bp 0.372410670719848 0.767018778069915 0.25534457 0.2209926 prediction 0.534037556139831 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55047060 chr19:55047064 synonymous SNV . 0 25 hm5C_associated_SNPs_105426 0 0 0 0 1 Nucleus 0.500231643904501 0.500231643921092 0 3.31821237153918e-11 hm5C_site_58571 DeepMRMD:0;iRNA_m5C:3.31821237153918e-11 58572 chr2 26410254 26410254 1 + C G rs531671860 26410253 + 26410233 26410273 41 ACACAGCCCAGCCAGGCCTCCCGGGCCCTCACAGAGCCTCT ACACAGCCCAGCCAGGCCTCCGGGGCCCTCACAGAGCCTCT < 41bp 0.456306291918119 0.767018749042712 0.16574615 0.7465956 prediction 0.534037498085423 Functional Gain - GAREM2 ENSG00000157833 CDS Human protein_coding chr2:26410253 chr2:26410254 nonsynonymous SNV 0.054 0 22 hm5C_associated_SNPs_105427 0 0 1 0 0 Exosome 0.500231643921092 0.500231643921092 0.4931912 2.22044604925031e-16 hm5C_site_58572 DeepMRMD:0.4931912;iRNA_m5C:2.22044604925031e-16 58573 chr16 29853106 29853106 1 + C A LUSC 29853102 + 29853082 29853122 41 AACAAGACCCGTGTGGTCAGCTACCGCGTGCCCCACAACGC AACAAGACCCGTGTGGTCAGCTACAGCGTGCCCCACAACGC < 41bp 0.338079099885459 0.767017668177977 0.086977005 0.20888373 prediction 0.534035336355953 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29853102 chr16:29853106 nonsynonymous SNV 0.837 3 25 hm5C_associated_SNPs_105428 0 0 1 0 1 Nucleus 0.500231643921087 0.500231643935332 0 2.84883228118815e-11 hm5C_site_58573 DeepMRMD:0;iRNA_m5C:2.84883228118815e-11 58574 chr14 42356770 42356770 1 + T C STAD 42356768 + 42356748 42356788 41 GGTGCAAAGCCAGGGGAGACCCTGAGCCTGCAATTCACTGG GGTGCAAAGCCAGGGGAGACCCCGAGCCTGCAATTCACTGG < 41bp 0.513036906996336 0.780051230903501 0.34458134 0.2631325 prediction 0.534028647814331 Functional Gain - LRFN5 ENSG00000165379 CDS Human protein_coding chr14:42356768 chr14:42356770 synonymous SNV . 0 23 hm5C_associated_SNPs_105429 0 0 0 0 0 Nucleus 0.500231643919451 0.50023164387898 0 0 hm5C_site_58574 DeepMRMD:0;iRNA_m5C:0 58575 chr6 30619145 30619145 1 + T G rs35201959 30619143 + 30619123 30619163 41 TTTTACAGCTGACCCGCCACCCTGAGAACTGGACCCTGCAA TTTTACAGCTGACCCGCCACCCGGAGAACTGGACCCTGCAA < 41bp 0.524498895610464 0.791508389284591 0.18472657 0.93299717 prediction 0.534018987348254 Functional Gain - C6orf136 ENSG00000204564 CDS Human protein_coding chr6:30619143 chr6:30619145 stoploss . 0 23 hm5C_associated_SNPs_105430 0 0 1 0 1 Cytosol 0.500231643886787 0.500231643939476 0.86599434 1.05379260872951e-10 hm5C_site_58575 DeepMRMD:0.86599434;iRNA_m5C:1.05379260872951e-10 58576 chr11 69305571 69305571 1 + C A rs56408035 69305567 + 69305547 69305587 41 AGTGGTAGACCCCGGCACAGCAGGCGCTCAGCAGTGCAGCA AGTGGTAGACCCCGGCACAGCAGGAGCTCAGCAGTGCAGCA < 41bp 0.601359906802483 0.868366501611183 0.878963 0.89920044 prediction 0.5340131896174 Functional Gain - LINC01488 ENSG00000255774;ENSG00000110092 intergenic Human other chr11:69305567 chr11:69305571 . . 0 25 hm5C_associated_SNPs_105431 0 0 0 0 0 unknown 0.500231683202606 0.500231944057565 0.0404748799999999 5.21709916601054e-07 hm5C_site_58576 DeepMRMD:0.0404748799999999;iRNA_m5C:5.21709916601054e-07 58577 chr22 23466057 23466057 1 + C G rs147038488 23466056 + 23466036 23466076 41 GAGGAGGGCCAGCTCGCTGCCCGAGCTCTGGCCTAGGGACC GAGGAGGGCCAGCTCGCTGCCGGAGCTCTGGCCTAGGGACC < 41bp 0.468329958144719 0.76700592785128 0.79775393 0.9082767 prediction 0.534011855702559 Functional Gain - GNAZ ENSG00000128266 UTR3 Human protein_coding chr22:23466056 chr22:23466057 . . 0 22 hm5C_associated_SNPs_105432 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921091 0.22104554 0 hm5C_site_58577 DeepMRMD:0.22104554;iRNA_m5C:0 58578 chr7 53103566 53103566 1 + T A LUSC 53103562 + 53103542 53103582 41 CAGAGCCATATTCAGTACTTCCAGTGGGGGCGCCCGGTGCC CAGAGCCATATTCAGTACTTCCAGAGGGGGCGCCCGGTGCC < 41bp 0.532938118928581 0.799915891618141 0.74241126 0.888397 prediction 0.533955545379121 Functional Gain - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103562 chr7:53103566 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_105433 0 0 0 0 0 unknown 0.500231643920862 0.500231643916531 0.29197148 0 hm5C_site_58578 DeepMRMD:0.29197148;iRNA_m5C:0 58579 chr19 18977553 18977553 1 + C A rs567906682 18977549 + 18977529 18977569 41 GGGAGCGGAGGAGGGGCCGGCCCGCGGGAGCCGCGGCCACC GGGAGCGGAGGAGGGGCCGGCCCGAGGGAGCCGCGGCCACC < 41bp 0.627843668791234 0.894793070800817 0.7521968 0.8706393 prediction 0.533898804019166 Functional Gain - UPF1 ENSG00000005007 UTR3 Human protein_coding chr19:18977549 chr19:18977553 . . 0 25 hm5C_associated_SNPs_105434 0 0 1 0 0 Nucleus 0.500231643921002 0.500231643921807 0.236885 1.61115565333603e-12 hm5C_site_58579 DeepMRMD:0.236885;iRNA_m5C:1.61115565333603e-12 58580 chr1 151032163 151032163 1 + C G rs17838186 151032162 + 151032142 151032182 41 TCGGAGCCCGGCGCACTGCTCCCCTCTGGACTGCGGAGGCA TCGGAGCCCGGCGCACTGCTCGCCTCTGGACTGCGGAGGCA < 41bp 0.466073699241039 0.766946821044918 0.08577183 0.14086664 prediction 0.533893642089836 Functional Gain - MLLT11 ENSG00000197622;ENSG00000213190 UTR5 Human other chr1:151032162 chr1:151032163 . . 0 22 hm5C_associated_SNPs_105435 0 0 0 0 0 Cytosol 0.500231643931608 0.500231933839524 0 5.79815831347474e-07 hm5C_site_58580 DeepMRMD:0;iRNA_m5C:5.79815831347474e-07 58581 chr11 124489480 124489480 1 + T A LUSC 124489476 + 124489456 124489496 41 TTTCCAGATTGTTAGCCTCTCCAGTGTAGCAATATACACCA TTTCCAGATTGTTAGCCTCTCCAGAGTAGCAATATACACCA < 41bp 0.456616250940334 0.766930239682373 0.14928097 0.5400817 prediction 0.533860479364745 Functional Gain - PANX3 ENSG00000154143 CDS Human protein_coding chr11:124489476 chr11:124489480 nonsynonymous SNV 0.294 1 25 hm5C_associated_SNPs_105436 0 0 0 0 0 unknown 0.500230870419973 0.500231462696841 0.0801634 1.18455373665505e-06 hm5C_site_58581 DeepMRMD:0.0801634;iRNA_m5C:1.18455373665505e-06 58582 chr19 14143218 14143218 1 + T G BRCA 14143215 + 14143195 14143235 41 CAGGCAGCGCCGGGCCACTGCAGTGCTACGGAGTTGGACCC CAGGCAGCGCCGGGCCACTGCAGGGCTACGGAGTTGGACCC < 41bp 0.647830419430615 0.914759836629369 0.4048918 0.93766046 prediction 0.533858834397507 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14143215 chr19:14143218 nonsynonymous SNV 0.913 3 24 hm5C_associated_SNPs_105437 0 0 0 0 2 chromatin 0.500231643908242 0.500231643921092 0.87532092 2.57005527970477e-11 hm5C_site_58582 DeepMRMD:0.87532092;iRNA_m5C:2.57005527970477e-11 58583 chr1 152484128 152484128 1 + T A BLCA 152484124 + 152484104 152484144 41 TGTCCCCCAAAATGCCCTCCCCAGTGTTCAGCCCCATGCCC TGTCCCCCAAAATGCCCTCCCCAGAGTTCAGCCCCATGCCC < 41bp 0.542797469035307 0.809724246220354 0.20953554 0.2854252 prediction 0.533853554370093 Functional Gain - LCE5A ENSG00000186207 CDS Human protein_coding chr1:152484124 chr1:152484128 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105438 0 0 0 0 0 exosome 0.500231643929646 0.500231643923725 0 0 hm5C_site_58583 DeepMRMD:0;iRNA_m5C:0 58584 chr10 101295456 101295456 1 + T G rs151053941 101295454 + 101295434 101295474 41 GCCGCGTGCGCTCAGGGCACCTTGCAGGGCATCCGGGCCTG GCCGCGTGCGCTCAGGGCACCTGGCAGGGCATCCGGGCCTG < 41bp 0.603595979883279 0.870512976254306 0.069265455 0.27058423 prediction 0.533833992742055 Functional Gain - NKX2-3 ENSG00000119919 CDS Human protein_coding chr10:101295454 chr10:101295456 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_105439 0 0 0 0 0 exosome 0.500231426111024 0.500239286431982 0 1.57206419153511e-05 hm5C_site_58584 DeepMRMD:0;iRNA_m5C:1.57206419153511e-05 58585 chr14 94697003 94697003 1 + T G SKCM 94697000 + 94696980 94697020 41 GACCATTCTGCAGGACGAATCAGTGTCAATTCATGCATATA GACCATTCTGCAGGACGAATCAGGGTCAATTCATGCATATA < 41bp 0.375599210849965 0.76691500981098 0.014497608 0.93050754 prediction 0.533830019621959 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94697000 chr14:94697003 nonsynonymous SNV 0.996 1 24 hm5C_associated_SNPs_105440 0 0 0 0 2 cytosol 0.500231643921041 0.500231643921092 0.86101508 1.02584607475364e-13 hm5C_site_58585 DeepMRMD:0.86101508;iRNA_m5C:1.02584607475364e-13 58586 chr11 55419086 55419086 1 + C A LUAD 55419082 + 55419062 55419102 41 CAGAAGGCAGGCGCAAAGCCCTCTCCACCTGTGGCTCCCAC CAGAAGGCAGGCGCAAAGCCCTCTACACCTGTGGCTCCCAC < 41bp 0.37470642239868 0.766909420636758 0.30518198 0.8621359 prediction 0.533818841273515 Functional Gain - OR4S2 ENSG00000174982 CDS Human protein_coding chr11:55419082 chr11:55419086 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_105441 0 0 0 0 0 unknown 0.5002316439214 0.500231643910105 0.7242718 0 hm5C_site_58586 DeepMRMD:0.7242718;iRNA_m5C:0 58587 chr9 131909727 131909727 1 + C A KIRC 131909723 + 131909703 131909743 41 TCGGGAGCCTGCTGCCCATCCATCCTGTCACGTCGGGCTAG TCGGGAGCCTGCTGCCCATCCATCATGTCACGTCGGGCTAG < 41bp 0.389529515549496 0.766907412525927 0.15820125 0.10442713 prediction 0.533814825051855 Functional Gain - PTPA ENSG00000119383 CDS Human protein_coding chr9:131909723 chr9:131909727 nonsynonymous SNV 0.862 4 25 hm5C_associated_SNPs_105442 0 0 1 0 1 Nucleus 0.500231643921118 0.50024346033064 0 2.36328190441615e-05 hm5C_site_58587 DeepMRMD:0;iRNA_m5C:2.36328190441615e-05 58588 chr12 7310150 7310150 1 + C A UCEC 7310146 + 7310126 7310166 41 GGCTTCCTGGTGCTCATGGTCGTCCTGGGCCTGGTGCGCAT GGCTTCCTGGTGCTCATGGTCGTCATGGGCCTGGTGCGCAT < 41bp 0.347387556755805 0.766894798356014 0.15205318 0.27618372 prediction 0.533789596712028 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7310146 chr12:7310150 nonsynonymous SNV 0.986 3 25 hm5C_associated_SNPs_105443 0 0 1 0 1 Endoplasmic reticulum 0.500231643209077 0.500231643918071 0 1.4179879492815e-09 hm5C_site_58588 DeepMRMD:0;iRNA_m5C:1.4179879492815e-09 58589 chr9 140036576 140036576 1 + C G LUAD 140036575 + 140036555 140036595 41 CCCGTGCTGGGGCTGACCACCCGCATGTCCATCTACTCGGA CCCGTGCTGGGGCTGACCACCGGCATGTCCATCTACTCGGA < 41bp 0.539433270524132 0.806326127918095 0.027179927 0.1327202 prediction 0.533785714787927 Functional Gain - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140036575 chr9:140036576 nonsynonymous SNV 0.979 4 22 hm5C_associated_SNPs_105444 0 0 0 0 1 exosome 0.500231643481308 0.500231643921132 0 8.79646355755881e-10 hm5C_site_58589 DeepMRMD:0;iRNA_m5C:8.79646355755881e-10 58590 chr7 6194170 6194170 1 + C G rs367756775 6194169 + 6194149 6194189 41 CGACCGCCAGGACCGCCACGCCCCGGAGCACCACCCCGGCC CGACCGCCAGGACCGCCACGCGCCGGAGCACCACCCCGGCC < 41bp 0.463525876885418 0.76688648480992 0.34943497 0.6845057 prediction 0.53377296961984 Functional Gain - USP42 ENSG00000106346 CDS Human protein_coding chr7:6194169 chr7:6194170 synonymous SNV . 0 22 hm5C_associated_SNPs_105445 0 0 0 0 0 Ribosome 0.50023233533438 0.500231623185129 0.3690114 0 hm5C_site_58590 DeepMRMD:0.3690114;iRNA_m5C:0 58591 chr15 25448290 25448290 1 + T G rs530741018 25448288 + 25448268 25448308 41 TGCTGAAGCTCAGGCCCTTCCTTGTGCCCTAGTCTCCTGCA TGCTGAAGCTCAGGCCCTTCCTGGTGCCCTAGTCTCCTGCA < 41bp 0.440537761726672 0.766879223069792 0.06520793 0.3687212 prediction 0.533758446139584 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25448288 chr15:25448290 . . 0 23 hm5C_associated_SNPs_105446 0 0 0 0 1 unknown 0.500231643921079 0.500231643921145 0 1.31450406115619e-13 hm5C_site_58591 DeepMRMD:0;iRNA_m5C:1.31450406115619e-13 58592 chr1 24782721 24782721 1 + T C STAD 24782719 + 24782699 24782739 41 CTTGACTACCCCATCTTCTACGTGATGTTCGTGTGCATGGT CTTGACTACCCCATCTTCTACGCGATGTTCGTGTGCATGGT < 41bp 0.53759666633059 0.804463362934494 0.13841894 0.157163 prediction 0.533733393207809 Functional Gain - NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24782719 chr1:24782721 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105447 0 0 1 0 1 Endoplasmic reticulum 0.500231647528908 0.500231694913036 0 9.47682547991491e-08 hm5C_site_58592 DeepMRMD:0;iRNA_m5C:9.47682547991491e-08 58593 chr6 27222804 27222804 1 + C A SARC 27222800 + 27222780 27222820 41 GGCATGTGCTAAGTGTAACACAGGCTTTAGGATCCTCAGAA GGCATGTGCTAAGTGTAACACAGGATTTAGGATCCTCAGAA < 41bp 0.646523772628659 0.913372932235232 0.28511333 0.46505916 prediction 0.533698319213147 Functional Gain - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27222800 chr6:27222804 nonsynonymous SNV 0.053 0 25 hm5C_associated_SNPs_105448 0 0 1 0 1 Cytosol 0.500231572025221 0.500231390996263 0 0 hm5C_site_58593 DeepMRMD:0;iRNA_m5C:0 58594 chr17 38508212 38508212 1 + T A LUSC 38508208 + 38508188 38508228 41 AAGAAGGAGGTGCCCAAGCCCGAGTGCTCTGAGAGCTACAC AAGAAGGAGGTGCCCAAGCCCGAGAGCTCTGAGAGCTACAC < 41bp 0.575298510904999 0.84213697494443 0.62908727 0.85244805 prediction 0.533676928078863 Functional Gain - RARA ENSG00000131759 CDS Human protein_coding chr17:38508208 chr17:38508212 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_105449 0 0 1 0 1 chromatin 0.500231651726068 0.500231644511065 0.44672156 0 hm5C_site_58594 DeepMRMD:0.44672156;iRNA_m5C:0 58595 chr3 52521224 52521224 1 + C G BRCA 52521223 + 52521203 52521243 41 CCTGCACAGCCCAGAACATGCCGAGCCGGAGGTCCAGGTGG CCTGCACAGCCCAGAACATGCGGAGCCGGAGGTCCAGGTGG < 41bp 0.459035765455617 0.766829100039243 0.85134935 0.9277263 prediction 0.533658200078487 Functional Gain - NISCH ENSG00000010322 CDS Human protein_coding chr3:52521223 chr3:52521224 synonymous SNV . 0 22 hm5C_associated_SNPs_105450 0 0 1 0 0 Cytosol 0.500231643921263 0.500231716998597 0.1527539 1.46154668589915e-07 hm5C_site_58595 DeepMRMD:0.1527539;iRNA_m5C:1.46154668589915e-07 58596 chr12 54675243 54675243 1 + T C UCEC 54675241 + 54675221 54675261 41 TTTGAAACAACTGATGAGAGCCTGAGGAGCCATTTTGAGCA TTTGAAACAACTGATGAGAGCCCGAGGAGCCATTTTGAGCA < 41bp 0.524383163117182 0.791202486745078 0.36798185 0.2774541 prediction 0.533638647255791 Functional Gain - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675241 chr12:54675243 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_105451 0 0 0 0 2 Cytosol 0.500231644925673 0.500231643921092 0 0 hm5C_site_58596 DeepMRMD:0;iRNA_m5C:0 58597 chr11 4929129 4929129 1 + C A UCEC 4929125 + 4929105 4929145 41 GTCAAAAGAATCTTCTTTCTCACTCATACTGTCTTCATCAG GTCAAAAGAATCTTCTTTCTCACTAATACTGTCTTCATCAG < 41bp 0.375279094553731 0.766818007374523 0.054943085 0.1049974 prediction 0.533636014749046 Functional Gain - OR51A7 ENSG00000176895 CDS Human protein_coding chr11:4929125 chr11:4929129 stopgain 0.994 0 25 hm5C_associated_SNPs_105452 0 0 0 0 0 exosome 0.500231646869519 0.500231903189546 0 5.12640053518254e-07 hm5C_site_58597 DeepMRMD:0;iRNA_m5C:5.12640053518254e-07 58598 chr5 9546628 9546628 1 + C G rs2271220 9546627 + 9546607 9546647 41 GACGTGGCGCTCCCTCTCTGCCGGCCTCGGCTTCAGGTACG GACGTGGCGCTCCCTCTCTGCGGGCCTCGGCTTCAGGTACG < 41bp 0.547978125348994 0.814795406561579 0.592283 0.7071668 prediction 0.53363456242517 Functional Gain - SNHG18 ENSG00000250786 ncRNA_exonic Human lincRNA chr5:9546627 chr5:9546628 . . 0 22 hm5C_associated_SNPs_105453 0 0 0 0 1 unknown 0.500233635666001 0.500231635106808 0.2297676 0 hm5C_site_58598 DeepMRMD:0.2297676;iRNA_m5C:0 58599 chr21 46047094 46047094 1 + C G LUAD 46047093 + 46047073 46047113 41 TCCTCCCCACCCCAGCATGGCCGCGTCCACCATGTCCATCC TCCTCCCCACCCCAGCATGGCGGCGTCCACCATGTCCATCC < 41bp 0.55046977749868 0.817278562476833 0.03818032 0.42057604 prediction 0.533617569956304 Functional Gain - KRTAP10-9 ENSG00000221837 CDS Human protein_coding chr21:46047093 chr21:46047094 synonymous SNV . 0 22 hm5C_associated_SNPs_105454 0 0 0 0 0 unknown 0.500231098702162 0.500231592082629 0 9.8676093229777e-07 hm5C_site_58599 DeepMRMD:0;iRNA_m5C:9.8676093229777e-07 58600 chr19 45851943 45851943 1 + T C COAD 45851941 + 45851921 45851961 41 AAGAAGCCACAGACCTTCTCCATGATGCCCTGCAGATCCGG AAGAAGCCACAGACCTTCTCCACGATGCCCTGCAGATCCGG < 41bp 0.516930492608519 0.783736156537784 0.115980566 0.25601083 prediction 0.533611327858529 Functional Gain - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851941 chr19:45851943 synonymous SNV . 0 23 hm5C_associated_SNPs_105455 0 0 0 0 2 nucleolus 0.500231643921089 0.500231643920743 0 0 hm5C_site_58600 DeepMRMD:0;iRNA_m5C:0 58601 chr12 122691375 122691375 1 + C A UCEC 122691371 + 122691351 122691391 41 GACTTCACTGAGGACTTCTTCAACCTGACGCTCAAGGAGCT GACTTCACTGAGGACTTCTTCAACATGACGCTCAAGGAGCT < 41bp 0.34629397087692 0.766797188648509 0.24398848 0.13690022 prediction 0.533594377297019 Functional Gain - B3GNT4 ENSG00000176383 CDS Human protein_coding chr12:122691371 chr12:122691375 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105456 0 0 0 0 0 chromatin 0.500231643921092 0.500231643223442 0 0 hm5C_site_58601 DeepMRMD:0;iRNA_m5C:0 58602 chr4 129783067 129783067 1 + T A CESC 129783063 + 129783043 129783083 41 CTGAGTGTTCCCCCCGGAATCCGCTGGAGCCCTTTGCCAGC CTGAGTGTTCCCCCCGGAATCCGCAGGAGCCCTTTGCCAGC < 41bp 0.449861873166155 0.766788924180813 0.18925023 0.6372918 prediction 0.533577848361625 Functional Gain - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129783063 chr4:129783067 nonsynonymous SNV 0.342 0 25 hm5C_associated_SNPs_105457 0 0 1 0 0 Ribosome 0.500231643958491 0.50023164399624 0.2745836 7.54973861205599e-11 hm5C_site_58602 DeepMRMD:0.2745836;iRNA_m5C:7.54973861205599e-11 58603 chr2 177036984 177036984 1 + C G LUSC 177036983 + 177036963 177037003 41 GGGACGACTGCCGGAGGCTCCCAAACTGACGCATCTGTAGC GGGACGACTGCCGGAGGCTCCGAAACTGACGCATCTGTAGC < 41bp 0.455198888360595 0.766785930959762 0.21887937 0.4367711 prediction 0.533571861919524 Functional Gain - HOXD3 ENSG00000128652 CDS Human protein_coding chr2:177036983 chr2:177036984 synonymous SNV . 0 22 hm5C_associated_SNPs_105458 0 0 0 0 0 exosome 0.500231643853028 0.500231643904531 0 1.03004271778673e-10 hm5C_site_58603 DeepMRMD:0;iRNA_m5C:1.03004271778673e-10 58604 chr5 154179464 154179464 1 + C T STAD 154179463 + 154179443 154179483 41 TGGCTCTCCTCGTGCAGTCACCCCAGTGCCAACCAAAACAG TGGCTCTCCTCGTGCAGTCACTCCAGTGCCAACCAAAACAG < 41bp 0.491333480536688 0.766746063316687 0.07142165 0.9333576 prediction 0.533492126633374 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154179463 chr5:154179464 synonymous SNV . 0 22 hm5C_associated_SNPs_105459 0 0 1 0 0 Cytosol 0.500310475724683 0.500274142469978 0.8667152 0 hm5C_site_58604 DeepMRMD:0.8667152;iRNA_m5C:0 58605 chr1 1431178 1431178 1 + C G rs148302536 1431177 + 1431157 1431197 41 GCGGTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTGTAG GCGGTCGGCCGTTCTGCCCCCGAGGGCACCCCCTGTTGTAG < 41bp 0.467606366409202 0.766744594539766 0.20735833 0.80275 prediction 0.533489189079531 Functional Gain - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1431177 chr1:1431178 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_105460 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921267 0.6055 3.49498208151999e-13 hm5C_site_58605 DeepMRMD:0.6055;iRNA_m5C:3.49498208151999e-13 58606 chr10 72511899 72511899 1 + T G BLCA 72511897 + 72511877 72511917 41 CGGCGCAGACGAGACCACCACATGGTGCAGCGACACCTGTG CGGCGCAGACGAGACCACCACAGGGTGCAGCGACACCTGTG < 41bp 0.405769256850094 0.766741024170562 0.4379372 0.90303934 prediction 0.533482048341123 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72511897 chr10:72511899 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105461 0 0 0 0 2 chromatin 0.500231707040566 0.500231643645347 0.80607868 0 hm5C_site_58606 DeepMRMD:0.80607868;iRNA_m5C:0 58607 chr15 101597188 101597188 1 + C G ESCA 101597187 + 101597167 101597207 41 TCCGCCCGGTTCTGGGGCAGCCGGAGGAAGTGCAGTTCCGG TCCGCCCGGTTCTGGGGCAGCGGGAGGAAGTGCAGTTCCGG < 41bp 0.460056731621791 0.766721540766319 0.89858377 0.90007967 prediction 0.533443081532638 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101597187 chr15:101597188 nonsynonymous SNV 0.952 2 22 hm5C_associated_SNPs_105462 0 0 0 0 1 Nucleus 0.500231643926465 0.500231643921118 0.00299179999999999 0 hm5C_site_58607 DeepMRMD:0.00299179999999999;iRNA_m5C:0 58608 chr2 190532129 190532129 1 + T A rs149609177 190532125 + 190532105 190532145 41 TACAAGCTGTTAGCCCTTCCCGAATTTGGAATTTTGTTGAA TACAAGCTGTTAGCCCTTCCCGAAATTGGAATTTTGTTGAA < 41bp 0.580805279777943 0.847518511318462 0.35665584 0.52756643 prediction 0.533426463081037 Functional Gain - ASNSD1 ENSG00000138381 CDS Human protein_coding chr2:190532125 chr2:190532129 nonsynonymous SNV 0.971 0 25 hm5C_associated_SNPs_105463 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921093 0.0551328600000001 2.22044604925031e-16 hm5C_site_58608 DeepMRMD:0.0551328600000001;iRNA_m5C:2.22044604925031e-16 58609 chrX 84502615 84502615 1 + C G LUSC 84502611 + 84502591 84502631 41 GGTGGAAGTCTTGGATTGCACACGCCAGACTCTAGAATGGC GGTGGAAGTCTTGGATTGCACACGGCAGACTCTAGAATGGC < 41bp 0.499470713463034 0.766702856936546 0.13061267 0.16407192 prediction 0.533405713873093 Functional Gain - ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84502611 chrX:84502615 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_105464 0 0 1 0 2 cytosol 0.500231613099194 0.500231634220189 0 4.22419901280335e-08 hm5C_site_58609 DeepMRMD:0;iRNA_m5C:4.22419901280335e-08 58610 chr17 6939447 6939447 1 + C G rs541605044 6939446 + 6939426 6939466 41 CGGCTTGAACTAGCTCAGCTCCGAGCTCGCGGAACCACGCC CGGCTTGAACTAGCTCAGCTCGGAGCTCGCGGAACCACGCC < 41bp 0.531250445633266 0.79795264872133 0.840996 0.9228641 prediction 0.533404406176127 Functional Gain - SLC16A13 ENSG00000174327 UTR5 Human protein_coding chr17:6939446 chr17:6939447 . . 0 22 hm5C_associated_SNPs_105465 0 0 1 0 0 chromatin 0.50023164392088 0.500231643921733 0.1637362 1.70485847661439e-12 hm5C_site_58610 DeepMRMD:0.1637362;iRNA_m5C:1.70485847661439e-12 58611 chr2 170183527 170183527 1 + C G rs564748376 170183526 + 170183506 170183546 41 GAAGTGAGGAGCCCCTCCGCCCGGCAGCCACCCCGTCTGGG GAAGTGAGGAGCCCCTCCGCCGGGCAGCCACCCCGTCTGGG < 41bp 0.52395267198278 0.790653310144098 0.09264201 0.805528 prediction 0.533401276322636 Functional Gain - LRP2 ENSG00000081479 intronic Human protein_coding chr2:170183526 chr2:170183527 . . 0 22 hm5C_associated_SNPs_105466 0 0 0 0 0 exosome 0.500231643922389 0.500231644112757 0.611056 3.80734554994433e-10 hm5C_site_58611 DeepMRMD:0.611056;iRNA_m5C:3.80734554994433e-10 58612 chr6 146351103 146351103 1 + C A STAD 146351099 + 146351079 146351119 41 TGACGGCCAGTCCCTCCCCCCAGGCAGGACTAAGAAGCCCA TGACGGCCAGTCCCTCCCCCCAGGAAGGACTAAGAAGCCCA < 41bp 0.372854204343827 0.766699307802872 0.30305624 0.70501196 prediction 0.533398615605745 Functional Gain - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146351099 chr6:146351103 synonymous SNV . 0 25 hm5C_associated_SNPs_105467 0 0 0 0 0 exosome 0.500231643920601 0.500231643914731 0.41002392 0 hm5C_site_58612 DeepMRMD:0.41002392;iRNA_m5C:0 58613 chr1 149858887 149858887 1 + C G CESC 149858886 + 149858866 149858906 41 CGTTCTGTTACCAAAGAAAACCGAAAGCCACAAAGCCAAAA CGTTCTGTTACCAAAGAAAACGGAAAGCCACAAAGCCAAAA < 41bp 0.525071517745553 0.79176583156082 0.35461265 0.68325675 prediction 0.533388627630534 Functional Gain - HIST2H2AC ENSG00000184260 CDS Human protein_coding chr1:149858886 chr1:149858887 synonymous SNV . 0 22 hm5C_associated_SNPs_105468 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921092 0.3665135 0 hm5C_site_58613 DeepMRMD:0.3665135;iRNA_m5C:0 58614 chr20 43945628 43945628 1 + C G rs60565951 43945627 + 43945607 43945647 41 CGGTAGCCCCGGCTGCCCACCCTGGAGGGCTGCGCCCGCGC CGGTAGCCCCGGCTGCCCACCGTGGAGGGCTGCGCCCGCGC < 41bp 0.567154145841832 0.833843516650058 0.14692697 0.5984905 prediction 0.533378741616453 Functional Gain - RBPJL ENSG00000124232 UTR3 Human protein_coding chr20:43945627 chr20:43945628 . . 0 22 hm5C_associated_SNPs_105469 0 0 0 0 0 unknown 0.500231643926254 0.500161671036527 0.196981 0 hm5C_site_58614 DeepMRMD:0.196981;iRNA_m5C:0 58615 chr12 57921371 57921371 1 + C G BLCA 57921367 + 57921347 57921387 41 ACTACTGACCCGGGGGCCTCCTCTCTGGGCAAGGCCCCCTC ACTACTGACCCGGGGGCCTCCTCTGTGGGCAAGGCCCCCTC < 41bp 0.521884037089519 0.78856667205123 0.1751647 0.27874684 prediction 0.533365269923422 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57921367 chr12:57921371 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_105470 0 0 1 0 2 chromatin 0.500231643921089 0.500231643921091 0 5.10702591327572e-15 hm5C_site_58615 DeepMRMD:0;iRNA_m5C:5.10702591327572e-15 58616 chr16 15068908 15068908 1 + C G rs28418438 15068907 + 15068887 15068927 41 CAACCATCAGGTTCGGCAGCCCGCGGCGCCGCCTGGCAGCT CAACCATCAGGTTCGGCAGCCGGCGGCGCCGCCTGGCAGCT < 41bp 0.524041292155002 0.790715816824969 0.5566153 0.9285332 prediction 0.533349049339935 Functional Gain - PDXDC1 ENSG00000179889 UTR5 Human protein_coding chr16:15068907 chr16:15068908 . . 0 22 hm5C_associated_SNPs_105471 0 0 0 0 0 Cytosol 0.500231502650377 0.5002316476471 0.7438358 2.89993445701242e-07 hm5C_site_58616 DeepMRMD:0.7438358;iRNA_m5C:2.89993445701242e-07 58617 chr5 79616044 79616044 1 + T A LUAD 79616040 + 79616020 79616060 41 TTTCCTTCTGTCCTGATGGCCAGCTCTGCTAAGTCAGCTGA TTTCCTTCTGTCCTGATGGCCAGCACTGCTAAGTCAGCTGA < 41bp 0.532341041610173 0.799007277687335 0.207369 0.12616771 prediction 0.533332472154323 Functional Gain - SPZ1 ENSG00000164299 CDS Human protein_coding chr5:79616040 chr5:79616044 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_105472 0 0 0 0 0 unknown 0.500231643827524 0.500231643962203 0 2.69358535476272e-10 hm5C_site_58617 DeepMRMD:0;iRNA_m5C:2.69358535476272e-10 58618 chr11 44931287 44931287 1 + T C LIHC 44931285 + 44931265 44931305 41 GCCTGCCTGCTGGCCATCGGCATCTGGGTCATGGTGGACCC GCCTGCCTGCTGGCCATCGGCACCTGGGTCATGGTGGACCC < 41bp 0.504394229221888 0.771055538978186 0.72471154 0.6156175 prediction 0.533322619512596 Functional Gain - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44931285 chr11:44931287 nonsynonymous SNV 0.980 4 23 hm5C_associated_SNPs_105473 0 0 0 0 1 Cytosol 0.500231680657923 0.500231989942158 0 6.1856847000108e-07 hm5C_site_58618 DeepMRMD:0;iRNA_m5C:6.1856847000108e-07 58619 chr22 37266473 37266473 1 + C G BRCA 37266469 + 37266449 37266489 41 CCACACAGAGCCTGCTCAGCCTGCCGGTCTGGGTGCTGATG CCACACAGAGCCTGCTCAGCCTGCGGGTCTGGGTGCTGATG < 41bp 0.540221662797883 0.806878531535086 0.026877224 0.03976068 prediction 0.533313737474406 Functional Gain - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37266469 chr22:37266473 nonsynonymous SNV 0.305 4 25 hm5C_associated_SNPs_105474 0 0 0 0 1 exosome 0.500231643934461 0.500231644019497 0 1.70072844696278e-10 hm5C_site_58619 DeepMRMD:0;iRNA_m5C:1.70072844696278e-10 58620 chr17 40837398 40837398 1 + C A PAAD 40837394 + 40837374 40837414 41 CGCCCAGGGCGACTACGTGACGCTCGAGCTGGAGGGGGCAC CGCCCAGGGCGACTACGTGACGCTAGAGCTGGAGGGGGCAC < 41bp 0.35197150429091 0.7666369572804 0.13338742 0.26704067 prediction 0.533273914560801 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40837394 chr17:40837398 synonymous SNV . 0 25 hm5C_associated_SNPs_105475 0 0 0 0 1 Cytosol 0.500231627070227 0.500231643973993 0 3.38075312189545e-08 hm5C_site_58620 DeepMRMD:0;iRNA_m5C:3.38075312189545e-08 58621 chr10 6186952 6186952 1 + C G rs561120271 6186948 + 6186928 6186968 41 CGGGCCGGCCCCGCGGGGAGCGCCCCCGGCGCGATGCCCTT CGGGCCGGCCCCGCGGGGAGCGCCGCCGGCGCGATGCCCTT < 41bp 0.481017664206041 0.766631140439246 0.35865515 0.48350525 prediction 0.533262280878491 Functional Gain - PFKFB3 ENSG00000170525 UTR5 Human protein_coding chr10:6186948 chr10:6186952 . . 0 25 hm5C_associated_SNPs_105476 0 0 0 0 1 Ribosome 0.500231644259897 0.500231644003284 0 0 hm5C_site_58621 DeepMRMD:0;iRNA_m5C:0 58622 chr19 38810744 38810744 1 + C G rs142888784 38810740 + 38810720 38810760 41 CGGGCGCAGCTGCTTCAGCGCAGCCCGTGTGTGGCTGCCCC CGGGCGCAGCTGCTTCAGCGCAGCGCGTGTGTGGCTGCCCC < 41bp 0.535531335736921 0.802152183252478 0.35184658 0.69192713 prediction 0.533241695031113 Functional Gain - KCNK6 ENSG00000099337 CDS Human protein_coding chr19:38810740 chr19:38810744 nonsynonymous SNV 0.934 1 25 hm5C_associated_SNPs_105477 0 0 0 0 0 Ribosome 0.500231644997073 0.50023147164778 0.38385426 0 hm5C_site_58622 DeepMRMD:0.38385426;iRNA_m5C:0 58623 chr5 154179587 154179587 1 + C T LGG 154179586 + 154179566 154179606 41 GAAGAAGAGGCCTCGGCCATCCCCAGCACGGCCCAAGGTGG GAAGAAGAGGCCTCGGCCATCTCCAGCACGGCCCAAGGTGG < 41bp 0.508833955058177 0.77543745465734 0.24973342 0.9333942 prediction 0.533206999198326 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154179586 chr5:154179587 synonymous SNV . 0 22 hm5C_associated_SNPs_105478 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.8667884 0 hm5C_site_58623 DeepMRMD:0.8667884;iRNA_m5C:0 58624 chr9 72874005 72874005 1 + C G rs573569022 72874004 + 72873984 72874024 41 AGGAAGCCAGGATGGCGACTCCGAGCAAGAAGACGTCAACT AGGAAGCCAGGATGGCGACTCGGAGCAAGAAGACGTCAACT < 41bp 0.550106413902488 0.816699060234109 0.55793166 0.91223 prediction 0.533185292663241 Functional Gain - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72874004 chr9:72874005 nonsynonymous SNV 0.730 1 22 hm5C_associated_SNPs_105479 0 0 1 0 0 Cytosol 0.500231643920401 0.500231643921092 0.70859668 1.38355993328787e-12 hm5C_site_58624 DeepMRMD:0.70859668;iRNA_m5C:1.38355993328787e-12 58625 chr15 90286681 90286681 1 + C G rs78803093 90286677 + 90286657 90286697 41 TTTCAGCCACGAGGCAGCTGCTCCCAGGACACTGAGGCCAA TTTCAGCCACGAGGCAGCTGCTCCGAGGACACTGAGGCCAA < 41bp 0.50893318898951 0.775525824458161 0.029156804 0.28825808 prediction 0.533185270937302 Functional Gain - WDR93 ENSG00000140527 UTR3 Human protein_coding chr15:90286677 chr15:90286681 . . 0 25 hm5C_associated_SNPs_105480 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58625 DeepMRMD:0;iRNA_m5C:0 58626 chr22 21356316 21356316 1 + C G rs79461566 21356312 + 21356292 21356332 41 CTGGCCTGTCGGGTCCCCCCCGGCCCGTTGTCGCCCCAACC CTGGCCTGTCGGGTCCCCCCCGGCGCGTTGTCGCCCCAACC < 41bp 0.4862440063176 0.766586968530453 0.54089516 0.9021691 prediction 0.533173937060907 Functional Gain - THAP7-AS1 ENSG00000230513 ncRNA_exonic Human antisense chr22:21356312 chr22:21356316 . . 0 25 hm5C_associated_SNPs_105481 0 0 0 0 0 unknown 0.500231653416286 0.500231519404527 0.72254788 0 hm5C_site_58626 DeepMRMD:0.72254788;iRNA_m5C:0 58627 chr1 148932895 148932895 1 + C A UCEC 148932891 + 148932871 148932911 41 AGACGGGTGAGGTACAGGCTCAGTCTGCGGCCAAGACTCCG AGACGGGTGAGGTACAGGCTCAGTATGCGGCCAAGACTCCG < 41bp 0.375632233090572 0.766578398391032 0.18571737 0.17346591 prediction 0.533156796782064 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932891 chr1:148932895 . . 0 25 hm5C_associated_SNPs_105482 0 0 0 1 1 unknown 0.500231645126117 0.50023164392055 0 0 hm5C_site_58627 DeepMRMD:0;iRNA_m5C:0 58628 chr4 3441258 3441258 1 + C G BRCA 3441257 + 3441237 3441277 41 TCTTGTAACTGGCTCGGCGCCCGGGCGGGATGGTGGCATAG TCTTGTAACTGGCTCGGCGCCGGGGCGGGATGGTGGCATAG < 41bp 0.513470789424416 0.780046688335298 0.71742177 0.898254 prediction 0.533151797821764 Functional Gain - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3441257 chr4:3441258 synonymous SNV . 0 22 hm5C_associated_SNPs_105483 0 0 0 0 1 Nucleus 0.500231643922787 0.500231643921092 0.36166446 0 hm5C_site_58628 DeepMRMD:0.36166446;iRNA_m5C:0 58629 chr20 10015787 10015787 1 + C G rs375503444 10015783 + 10015763 10015803 41 CACCCAGCCCTGCTGTCCCGCGCGCCAGCTCACCAGCCCTA CACCCAGCCCTGCTGTCCCGCGCGGCAGCTCACCAGCCCTA < 41bp 0.53532737650064 0.801899652292334 0.14276135 0.64265776 prediction 0.533144551583388 Functional Gain - SNAP25-AS1 ENSG00000227906 ncRNA_intronic Human antisense chr20:10015783 chr20:10015787 . . 0 25 hm5C_associated_SNPs_105484 0 0 0 0 0 unknown 0.500231654104034 0.500231643921093 0.28531552 0 hm5C_site_58629 DeepMRMD:0.28531552;iRNA_m5C:0 58630 chr19 41829990 41829990 1 + C G rs558383992 41829989 + 41829969 41830009 41 GAGTCCACGGTTCCTGACCTCCGAGCCTCAGCTATGCCCTC GAGTCCACGGTTCCTGACCTCGGAGCCTCAGCTATGCCCTC < 41bp 0.509191352695941 0.775760091240647 0.8695239 0.92490155 prediction 0.533137477089412 Functional Gain - CCDC97 ENSG00000142039 UTR3 Human protein_coding chr19:41829989 chr19:41829990 . . 0 22 hm5C_associated_SNPs_105485 0 0 1 0 0 chromatin 0.500231643920347 0.500231643921092 0.1107553 1.49036338825681e-12 hm5C_site_58630 DeepMRMD:0.1107553;iRNA_m5C:1.49036338825681e-12 58631 chr2 26676226 26676226 1 + C A LUAD 26676222 + 26676202 26676242 41 TCAGGCGAGCATGGAGAAGGCGAGCATGGAGGAGACAAGCA TCAGGCGAGCATGGAGAAGGCGAGAATGGAGGAGACAAGCA < 41bp 0.643951777475718 0.910519908314928 0.4135463 0.4151861 prediction 0.53313626167842 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26676222 chr2:26676226 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105486 0 0 0 0 1 exosome 0.500231643921092 0.500231643926622 0 1.10584874590813e-11 hm5C_site_58631 DeepMRMD:0;iRNA_m5C:1.10584874590813e-11 58632 chr19 49132520 49132520 1 + C G SKCM 49132516 + 49132496 49132536 41 TCCCAAGGCAGCTCTACACTCACCCGTCTCCGAAGGGGCCC TCCCAAGGCAGCTCTACACTCACCGGTCTCCGAAGGGGCCC < 41bp 0.482743707881768 0.766568025668865 0.24248138 0.36866552 prediction 0.533136051337729 Functional Gain - SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49132516 chr19:49132520 synonymous SNV . 0 25 hm5C_associated_SNPs_105487 0 0 1 0 0 chromatin 0.500231643921093 0.500231643921092 0 0 hm5C_site_58632 DeepMRMD:0;iRNA_m5C:0 58633 chr20 36997655 36997655 1 + C G rs2232613 36997654 + 36997634 36997674 41 CCCAGTTAGCCAGGCTCTACCCCAACATGAACCTGGAACTC CCCAGTTAGCCAGGCTCTACCGCAACATGAACCTGGAACTC < 41bp 0.582187362519669 0.848754849021321 0.09445089 0.33944303 prediction 0.533134973003304 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36997654 chr20:36997655 nonsynonymous SNV 0.971 4 22 hm5C_associated_SNPs_105488 0 1 0 0 1 exosome 0.500231643921098 0.500231624194907 0 0 hm5C_site_58633 DeepMRMD:0;iRNA_m5C:0 58634 chr16 5083802 5083802 1 + C G rs376332816 5083798 + 5083778 5083818 41 GGAGGACAGGGGGGACCCCCCGAACCAGGCTGGCCCAGGGA GGAGGACAGGGGGGACCCCCCGAAGCAGGCTGGCCCAGGGA < 41bp 0.535822981662849 0.802382478714371 0.29981437 0.4478105 prediction 0.533118994103043 Functional Gain - NAGPA-AS1 ENSG00000267072 ncRNA_intronic Human lincRNA chr16:5083798 chr16:5083802 . . 0 25 hm5C_associated_SNPs_105489 0 0 0 0 0 unknown 0.500231642223529 0.500231645513448 0 6.57983911800386e-09 hm5C_site_58634 DeepMRMD:0;iRNA_m5C:6.57983911800386e-09 58635 chr11 64940209 64940209 1 + C G LUSC 64940208 + 64940188 64940228 41 ACTCGGGACCGGCGCCCCCACCATGGTGGGGTTCAGAGGGT ACTCGGGACCGGCGCCCCCACGATGGTGGGGTTCAGAGGGT < 41bp 0.579128393386491 0.845682299733516 0.26215792 0.4818747 prediction 0.533107812694051 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64940208 chr11:64940209 nonsynonymous SNV 0.316 4 22 hm5C_associated_SNPs_105490 0 0 0 0 1 nucleolus 0.50023164395908 0.500231641289226 0 0 hm5C_site_58635 DeepMRMD:0;iRNA_m5C:0 58636 chr1 46740259 46740259 1 + T C UCEC 46740257 + 46740237 46740277 41 AGCAAAGCTGGGGGCTGTGGCCTCAATCTCATTGGGGCTAA AGCAAAGCTGGGGGCTGTGGCCCCAATCTCATTGGGGCTAA < 41bp 0.480943737489579 0.766542455957652 0.824342 0.55681264 prediction 0.533084911915304 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46740257 chr1:46740259 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_105491 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58636 DeepMRMD:0;iRNA_m5C:0 58637 chr11 124959175 124959175 1 + C G rs6590129 124959171 + 124959151 124959191 41 GTCGGGGCTTGGCTTGGCAGCGAGCGAGGCTGGCATGGGGT GTCGGGGCTTGGCTTGGCAGCGAGGGAGGCTGGCATGGGGT < 41bp 0.488651775113633 0.766536457090002 0.8484708 0.94605565 prediction 0.533072914180003 Functional Gain - SLC37A2 ENSG00000203306 ncRNA_exonic Human other chr11:124959171 chr11:124959175 . . 0 25 hm5C_associated_SNPs_105492 0 0 1 0 0 nucleolus 0.500231643920826 0.500231642441494 0.1951697 0 hm5C_site_58637 DeepMRMD:0.1951697;iRNA_m5C:0 58638 chr21 48069603 48069603 1 + C G rs148075005 48069602 + 48069582 48069622 41 GGTGGAGGATGTGGTGCTGCCCGAGAAGGTGGACGTGCTGG GGTGGAGGATGTGGTGCTGCCGGAGAAGGTGGACGTGCTGG < 41bp 0.561641829336595 0.828167107815838 0.07319301 0.79769576 prediction 0.533050556958485 Functional Gain - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48069602 chr21:48069603 synonymous SNV . 0 22 hm5C_associated_SNPs_105493 0 0 1 0 1 Cytosol 0.500231643921093 0.500231643921092 0.59539152 0 hm5C_site_58638 DeepMRMD:0.59539152;iRNA_m5C:0 58639 chr20 372062 372062 1 + T G GBM 372060 + 372040 372080 41 ACGCCTTTTTCACTCGGACCCATGGGGACATGCACAGCCTG ACGCCTTTTTCACTCGGACCCAGGGGGACATGCACAGCCTG < 41bp 0.6240916750833 0.890607766054377 0.88282907 0.94984245 prediction 0.533032181942153 Functional Gain - TRIB3 ENSG00000101255 CDS Human protein_coding chr20:372060 chr20:372062 nonsynonymous SNV 0.018 1 23 hm5C_associated_SNPs_105494 0 0 1 0 0 Ribosome 0.500231643921101 0.500231643921092 0.13402676 0 hm5C_site_58639 DeepMRMD:0.13402676;iRNA_m5C:0 58640 chr16 56865830 56865830 1 + C A rs145146218 56865826 + 56865806 56865846 41 AGGAACAATACAGATCCCTACAAGCGGGCCGTGTACTGTAT AGGAACAATACAGATCCCTACAAGAGGGCCGTGTACTGTAT < 41bp 0.348620952204497 0.766509825195897 0.19367489 0.1805357 prediction 0.533019650391794 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56865826 chr16:56865830 synonymous SNV . 0 25 hm5C_associated_SNPs_105495 0 0 1 0 2 Nucleus 0.500231643921092 0.5002316439211 0 1.4210854715202e-14 hm5C_site_58640 DeepMRMD:0;iRNA_m5C:1.4210854715202e-14 58641 chr17 656454 656454 1 + C G rs555057649 656450 + 656430 656470 41 ACGCGGCCAAAGTGGAGGAGCTGACGAAGAAGGAAGTGGGG ACGCGGCCAAAGTGGAGGAGCTGAGGAAGAAGGAAGTGGGG < 41bp 0.53187824383016 0.798381044138247 0.5519197 0.8748735 prediction 0.533005600616175 Functional Gain - DBIL5P ENSG00000231784 ncRNA_exonic Human transcribed_unitary_pseudogene chr17:656450 chr17:656454 . . 0 25 hm5C_associated_SNPs_105496 0 0 0 0 0 unknown 0.500231644136303 0.500231643870406 0.6459076 0 hm5C_site_58641 DeepMRMD:0.6459076;iRNA_m5C:0 58642 chr17 9764496 9764496 1 + T A UCEC 9764492 + 9764472 9764512 41 TGTTGTACCCTGGGGTTTCGCCCGTGCACACCTGGAGAACA TGTTGTACCCTGGGGTTTCGCCCGAGCACACCTGGAGAACA < 41bp 0.450043113815999 0.766501595651274 0.34235635 0.53514874 prediction 0.533003191302548 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9764492 chr17:9764496 synonymous SNV . 0 25 hm5C_associated_SNPs_105497 0 0 0 0 1 nucleus 0.500231645176177 0.500231647303281 0.07029748 4.25420809690991e-09 hm5C_site_58642 DeepMRMD:0.07029748;iRNA_m5C:4.25420809690991e-09 58643 chr11 14280924 14280924 1 + T G SKCM 14280921 + 14280901 14280941 41 CCCGGGAGAGGTATGTGAAGCAGTTCCCGGAGGACGGCTCC CCCGGGAGAGGTATGTGAAGCAGGTCCCGGAGGACGGCTCC < 41bp 0.405917310914704 0.766488491374728 0.044769973 0.25716984 prediction 0.532976982749456 Functional Gain - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14280921 chr11:14280924 . 1.000 1 24 hm5C_associated_SNPs_105498 0 0 0 0 2 chromatin 0.500231643921092 0.500231644229422 0 6.16658502039513e-10 hm5C_site_58643 DeepMRMD:0;iRNA_m5C:6.16658502039513e-10 58644 chr16 25078414 25078414 1 + C G rs115576878 25078413 + 25078393 25078433 41 GGGGGCTGAGGCCCAGCGGCCCGAGACCAACTGGGCTGACC GGGGGCTGAGGCCCAGCGGCCGGAGACCAACTGGGCTGACC < 41bp 0.486788329165391 0.766481794538925 0.80538803 0.8975404 prediction 0.532963589077849 Functional Gain - LINC02175 ENSG00000262155 ncRNA_exonic Human lincRNA chr16:25078413 chr16:25078414 . . 0 22 hm5C_associated_SNPs_105499 0 0 0 0 0 unknown 0.500231643973632 0.500231643923152 0.18430474 0 hm5C_site_58644 DeepMRMD:0.18430474;iRNA_m5C:0 58645 chr6 106547387 106547387 1 + T C STAD 106547385 + 106547365 106547405 41 GTCGGGACTTTGCAGAAAGGCTTCACTACCCTTATCCCGGA GTCGGGACTTTGCAGAAAGGCTCCACTACCCTTATCCCGGA < 41bp 0.559928715444857 0.826409424610913 0.07973075 0.4219479 prediction 0.532961418332111 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106547385 chr6:106547387 synonymous SNV . 0 23 hm5C_associated_SNPs_105500 0 0 0 0 1 cytosol 0.500231643922289 0.500231643921092 0 0 hm5C_site_58645 DeepMRMD:0;iRNA_m5C:0 58646 chr3 122821308 122821308 1 + C G rs377598783 122821307 + 122821287 122821327 41 AGATGAAAGTTGACCTGAGCCCGAAGGACAAAAAGGTTGAA AGATGAAAGTTGACCTGAGCCGGAAGGACAAAAAGGTTGAA < 41bp 0.46271686459264 0.766475427509799 0.3096363 0.6593 prediction 0.532950855019599 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122821307 chr3:122821308 nonsynonymous SNV 0.994 1 22 hm5C_associated_SNPs_105501 0 0 1 1 2 Endoplasmic reticulum 0.500231643025186 0.500231660480406 0.3186 3.49104398722488e-08 hm5C_site_58646 DeepMRMD:0.3186;iRNA_m5C:3.49104398722488e-08 58647 chr9 70647733 70647733 1 + T G rs62551518 70647730 + 70647710 70647750 41 TGTACCCTGGGCAGAGTGGACAGTGACGACCCTGGTTCGAG TGTACCCTGGGCAGAGTGGACAGGGACGACCCTGGTTCGAG < 41bp 0.400865337079235 0.766475356667989 0.23275226 0.8860259 prediction 0.532950713335979 Functional Gain - CBWD5;CBWD5 ENSG00000269337 UTR3 Human other chr9:70647730 chr9:70647733 . . 0 24 hm5C_associated_SNPs_105502 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.7720518 0 hm5C_site_58647 DeepMRMD:0.7720518;iRNA_m5C:0 58648 chr16 23700057 23700057 1 + T A GBM 23700053 + 23700033 23700073 41 AAGTGGGTGGACTATTCGGACAAGTACGGCCTTGGTAGGTT AAGTGGGTGGACTATTCGGACAAGAACGGCCTTGGTAGGTT < 41bp 0.45329323767192 0.766471078612649 0.3691654 0.3828365 prediction 0.532942157225298 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700053 chr16:23700057 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_105503 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58648 DeepMRMD:0;iRNA_m5C:0 58649 chr5 195088 195088 1 + C G LUAD 195087 + 195067 195107 41 CTGGGCCTGAGCCCCTGCCACCGGCTGCGCCAGCTCAAGTT CTGGGCCTGAGCCCCTGCCACGGGCTGCGCCAGCTCAAGTT < 41bp 0.452016729171783 0.766469099451148 0.56457144 0.89531565 prediction 0.532938198902296 Functional Gain - LRRC14B ENSG00000185028 CDS Human protein_coding chr5:195087 chr5:195088 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_105504 0 0 0 0 0 exosome 0.500231797274694 0.500231643988165 0.66148842 0 hm5C_site_58649 DeepMRMD:0.66148842;iRNA_m5C:0 58650 chr19 17453371 17453371 1 + C A rs148120864 17453367 + 17453347 17453387 41 GGATCACAGGCGTGAGCTATCACACCTGGCCCCAGAAGTGT GGATCACAGGCGTGAGCTATCACAACTGGCCCCAGAAGTGT < 41bp 0.425936691374214 0.766447930629928 0.316117 0.2826132 prediction 0.532895861259856 Functional Gain - GTPBP3 ENSG00000130299 UTR3 Human protein_coding chr19:17453367 chr19:17453371 . . 0 25 hm5C_associated_SNPs_105505 0 0 1 0 0 Ribosome 0.500231643912709 0.500231643921089 0 1.67592606459266e-11 hm5C_site_58650 DeepMRMD:0;iRNA_m5C:1.67592606459266e-11 58651 chr22 37325485 37325485 1 + C A CESC 37325481 + 37325461 37325501 41 AGGGACCTGCAGATCAGCACCGACCAGGACCACTTCCTGCT AGGGACCTGCAGATCAGCACCGACAAGGACCACTTCCTGCT < 41bp 0.341516028599404 0.766432472084804 0.031115651 0.045246363 prediction 0.532864944169608 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37325481 chr22:37325485 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105506 0 0 0 0 1 Endoplasmic reticulum 0.500231678214086 0.500231643921119 0 0 hm5C_site_58651 DeepMRMD:0;iRNA_m5C:0 58652 chr7 79082460 79082460 1 + T G LIHC 79082457 + 79082437 79082477 41 AGCAGCAGCTCCTCCGACACCAATTTGCTGCCGCTCTCATA AGCAGCAGCTCCTCCGACACCAAGTTGCTGCCGCTCTCATA < 41bp 0.4057112343607 0.766431468382138 0.12642589 0.29958904 prediction 0.532862936764277 Functional Gain - MAGI2 ENSG00000187391 CDS Human protein_coding chr7:79082457 chr7:79082460 nonsynonymous SNV 0.997 2 24 hm5C_associated_SNPs_105507 0 0 0 0 1 cytosol 0.500231643921338 0.500231643877355 0 0 hm5C_site_58652 DeepMRMD:0;iRNA_m5C:0 58653 chr3 128060548 128060548 1 + T G COAD 128060546 + 128060526 128060566 41 CTGGTGGAGTTTGAGAAGCCCGTCACCTGCCCTCGGCTGTG CTGGTGGAGTTTGAGAAGCCCGGCACCTGCCCTCGGCTGTG < 41bp 0.451909250984694 0.76643096596437 0.20299298 0.524813 prediction 0.532861931928741 Functional Gain - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:128060546 chr3:128060548 nonsynonymous SNV 0.978 4 23 hm5C_associated_SNPs_105508 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921093 0.0496259999999999 6.66133814775094e-16 hm5C_site_58653 DeepMRMD:0.0496259999999999;iRNA_m5C:6.66133814775094e-16 58654 chr9 107331901 107331901 1 + T G LUAD 107331898 + 107331878 107331918 41 ATGGCAGCTGGGTCCTGGGTCACTGGGCTTGTGGACTCAGT ATGGCAGCTGGGTCCTGGGTCACGGGGCTTGTGGACTCAGT < 41bp 0.639761185484632 0.906188899647486 0.21087167 0.78212535 prediction 0.532855428325708 Functional Gain - OR13C8 ENSG00000186943 CDS Human protein_coding chr9:107331898 chr9:107331901 synonymous SNV . 0 24 hm5C_associated_SNPs_105509 0 0 0 0 0 unknown 0.50023164342746 0.50023164391516 0.5642507 9.75399983005332e-10 hm5C_site_58654 DeepMRMD:0.5642507;iRNA_m5C:9.75399983005332e-10 58655 chr10 28966845 28966845 1 + T A OV 28966841 + 28966821 28966861 41 GCGTCAATGGATCGCCACTCCAGCTACATCTTCATCTGGCT GCGTCAATGGATCGCCACTCCAGCAACATCTTCATCTGGCT < 41bp 0.559752927620518 0.826176740241792 0.012589604 0.010827452 prediction 0.532847625242548 Functional Gain - BAMBI ENSG00000095739 CDS Human protein_coding chr10:28966841 chr10:28966845 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105510 0 0 1 0 1 Ribosome 0.500231805292836 0.500232121937018 0 6.33288363971474e-07 hm5C_site_58655 DeepMRMD:0;iRNA_m5C:6.33288363971474e-07 58656 chr6 118228909 118228909 1 + C A BLCA 118228905 + 118228885 118228925 41 CCGCGATGATCCCCCCTGAGCAGCCGCAGCAGCAGCTGCAG CCGCGATGATCCCCCCTGAGCAGCAGCAGCAGCAGCTGCAG < 41bp 0.626481660375767 0.892902582291595 0.3145068 0.29931143 prediction 0.532841843831656 Functional Gain - SLC35F1 ENSG00000196376 CDS Human protein_coding chr6:118228905 chr6:118228909 nonsynonymous SNV 0.871 0 25 hm5C_associated_SNPs_105511 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921104 0 2.28705943072782e-14 hm5C_site_58656 DeepMRMD:0;iRNA_m5C:2.28705943072782e-14 58657 chr19 35741319 35741319 1 + C T UCEC 35741318 + 35741298 35741338 41 ACCTACCAGATGACCTCGACCCCCACGCAACCCATCGTCAT ACCTACCAGATGACCTCGACCTCCACGCAACCCATCGTCAT < 41bp 0.500117862591681 0.766535216259101 0.017440915 0.8877196 prediction 0.53283470733484 Functional Gain - LSR ENSG00000105699 CDS Human protein_coding chr19:35741318 chr19:35741319 nonsynonymous SNV 0.007 0 22 hm5C_associated_SNPs_105512 0 0 1 0 1 chromatin 0.500231640810462 0.500232510808202 0.7754392 1.73999547992132e-06 hm5C_site_58657 DeepMRMD:0.7754392;iRNA_m5C:1.73999547992132e-06 58658 chr16 89234948 89234948 1 + C A rs12922670 89234944 + 89234924 89234964 41 TAGATGGGCTGGTCTGTGCTCTGACGGCCCCAGGACTGGGT TAGATGGGCTGGTCTGTGCTCTGAAGGCCCCAGGACTGGGT < 41bp 0.407937852545332 0.766412118959003 0.25129175 0.24751005 prediction 0.532824237918006 Functional Gain - LINC02138 ENSG00000205015 ncRNA_exonic Human lincRNA chr16:89234944 chr16:89234948 . . 0 25 hm5C_associated_SNPs_105513 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_58658 DeepMRMD:0;iRNA_m5C:0 58659 chr1 77747969 77747969 1 + C A UCEC 77747965 + 77747945 77747985 41 CGCCGCAGCCCGGGAGCCTCCCCGCTTGCGCCCCAAGGCAC CGCCGCAGCCCGGGAGCCTCCCCGATTGCGCCCCAAGGCAC < 41bp 0.628001774743014 0.894412776944408 0.08554435 0.069508225 prediction 0.532822004402788 Functional Gain - AK5 ENSG00000154027 UTR5 Human protein_coding chr1:77747965 chr1:77747969 . . 0 25 hm5C_associated_SNPs_105514 0 0 0 0 1 Nucleus 0.500231643921094 0.500231643921092 0 0 hm5C_site_58659 DeepMRMD:0;iRNA_m5C:0 58660 chr11 113813798 113813798 1 + C A LUAD 113813794 + 113813774 113813814 41 TGGACCTGGGGAGCTTCTACCTGCCACCCAACTGCCGAGCC TGGACCTGGGGAGCTTCTACCTGCAACCCAACTGCCGAGCC < 41bp 0.660853135221251 0.927263958237199 0.26762122 0.32432175 prediction 0.532821646031896 Functional Gain - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113813794 chr11:113813798 nonsynonymous SNV 0.171 5 25 hm5C_associated_SNPs_105515 0 0 0 0 1 cytosol 0.500231643921184 0.500231629830246 0 0 hm5C_site_58660 DeepMRMD:0;iRNA_m5C:0 58661 chr21 46348693 46348693 1 + T A rs111883687 46348689 + 46348669 46348709 41 GGTTTCTGCCCAAACGGAGCCACGTGAGGACTTCTTTGGGG GGTTTCTGCCCAAACGGAGCCACGAGAGGACTTCTTTGGGG < 41bp 0.513415734580352 0.779826062517995 0.27886534 0.109675676 prediction 0.532820655875286 Functional Gain - ITGB2-AS1 ENSG00000227039 ncRNA_exonic Human antisense chr21:46348689 chr21:46348693 . . 0 25 hm5C_associated_SNPs_105516 0 0 0 0 0 unknown 0.500231643919868 0.500231643915413 0 0 hm5C_site_58661 DeepMRMD:0;iRNA_m5C:0 58662 chr16 57610696 57610696 1 + C G rs542194850 57610695 + 57610675 57610715 41 TTCGCTCTTGGGGGCTGCACCCCAGACATAGCTGGCACCAG TTCGCTCTTGGGGGCTGCACCGCAGACATAGCTGGCACCAG < 41bp 0.49419871719447 0.766405377942826 0.42119253 0.7964033 prediction 0.532810755885651 Functional Gain - ADGRG5 ENSG00000159618 UTR3 Human protein_coding chr16:57610695 chr16:57610696 . . 0 22 hm5C_associated_SNPs_105517 0 0 0 0 0 Ribosome 0.500231643918876 0.50023136531161 0.5928066 0 hm5C_site_58662 DeepMRMD:0.5928066;iRNA_m5C:0 58663 chr19 5456632 5456632 1 + C A KIRC 5456628 + 5456608 5456648 41 TCAGGGACGAGGACCCCTCCCTACCGGGCCACCGGCCCCCC TCAGGGACGAGGACCCCTCCCTACAGGGCCACCGGCCCCCC < 41bp 0.647977054821974 0.914379721233043 0.053577214 0.63501686 prediction 0.532805332822137 Functional Gain - ZNRF4 ENSG00000105428 CDS Human protein_coding chr19:5456628 chr19:5456632 nonsynonymous SNV 0.029 2 25 hm5C_associated_SNPs_105518 0 0 0 0 0 unknown 0.50023165102391 0.500231643921093 0.27003372 0 hm5C_site_58663 DeepMRMD:0.27003372;iRNA_m5C:0 58664 chr16 28909608 28909608 1 + C A STAD 28909604 + 28909584 28909624 41 AACTATGTGCGAGTTGGCACCACCCGGGTGCCACTGACGGG AACTATGTGCGAGTTGGCACCACCAGGGTGCCACTGACGGG < 41bp 0.346713370841782 0.766396423768835 0.020979643 0.08033463 prediction 0.53279284753767 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28909604 chr16:28909608 synonymous SNV . 0 25 hm5C_associated_SNPs_105519 0 0 1 0 0 chromatin 0.50023164392322 0.500231645449151 0 3.05186320659345e-09 hm5C_site_58664 DeepMRMD:0;iRNA_m5C:3.05186320659345e-09 58665 chr1 71512790 71512790 1 + C G CHOL 71512789 + 71512769 71512809 41 CCAGTGCGGCGCCCTGATGGCCAGCGCCCGCTCGACGGCCA CCAGTGCGGCGCCCTGATGGCGAGCGCCCGCTCGACGGCCA < 41bp 0.571758926085655 0.838138245786076 0.14604232 0.29360968 prediction 0.532758639400842 Functional Gain - PTGER3 ENSG00000050628 CDS Human protein_coding chr1:71512789 chr1:71512790 synonymous SNV . 0 22 hm5C_associated_SNPs_105520 0 0 0 0 0 Endoplasmic reticulum 0.500231642785537 0.500231644932626 0 4.29417768010865e-09 hm5C_site_58665 DeepMRMD:0;iRNA_m5C:4.29417768010865e-09 58666 chr3 14485310 14485310 1 + C G rs41284011 14485306 + 14485286 14485326 41 CGACTTTGTGCTCTCTGTGGCTGGCGGCTTCGTGGGCTTGG CGACTTTGTGCTCTCTGTGGCTGGGGGCTTCGTGGGCTTGG < 41bp 0.524853088053836 0.791198850134349 0.47860837 0.8922757 prediction 0.532691524161026 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14485306 chr3:14485310 synonymous SNV . 0 25 hm5C_associated_SNPs_105521 0 0 1 0 1 Nucleus 0.500231643920773 0.500231643921092 0.7845514 6.3815619455454e-13 hm5C_site_58666 DeepMRMD:0.7845514;iRNA_m5C:6.3815619455454e-13 58667 chr12 113534585 113534585 1 + C G LUAD 113534584 + 113534564 113534604 41 CACTATCGGCACGTCCAACACCACGGGCGAGTCGGACACCG CACTATCGGCACGTCCAACACGACGGGCGAGTCGGACACCG < 41bp 0.45619703232236 0.766341286659289 0.14713207 0.3404265 prediction 0.532682573318579 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113534584 chr12:113534585 synonymous SNV . 0 22 hm5C_associated_SNPs_105522 0 0 0 0 1 Endoplasmic reticulum 0.500231637644564 0.500231597018498 0 0 hm5C_site_58667 DeepMRMD:0;iRNA_m5C:0 58668 chr1 153177373 153177373 1 + C A rs150911051 153177369 + 153177349 153177389 41 CCCAAGTGCCTGCCCTGCCCCTCGCAGTCTCCTTCATCCTG CCCAAGTGCCTGCCCTGCCCCTCGAAGTCTCCTTCATCCTG < 41bp 0.649163383826214 0.915499470873715 0.20243534 0.4235408 prediction 0.532672174095002 Functional Gain - LELP1 ENSG00000203784 CDS Human protein_coding chr1:153177369 chr1:153177373 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_105523 0 0 0 0 0 unknown 0.500231643594072 0.500231643920282 0 6.52420117930319e-10 hm5C_site_58668 DeepMRMD:0;iRNA_m5C:6.52420117930319e-10 58669 chr5 140563395 140563395 1 + C A STAD 140563391 + 140563371 140563411 41 GCAAGAGCTGAATATAATATCACCCTCACCGTCACAGATAT GCAAGAGCTGAATATAATATCACCATCACCGTCACAGATAT < 41bp 0.354643150012307 0.766310470997563 0.032118708 0.03242743 prediction 0.532620941995125 Functional Gain - PCDHB16 ENSG00000196963 CDS Human other chr5:140563391 chr5:140563395 nonsynonymous SNV 0.024 0 25 hm5C_associated_SNPs_105524 0 0 0 0 0 Nucleus 0.500231644353511 0.500231644389013 0 7.10029812722723e-11 hm5C_site_58669 DeepMRMD:0;iRNA_m5C:7.10029812722723e-11 58670 chr2 176982255 176982255 1 + C A LUSC 176982251 + 176982231 176982271 41 GGCCTTCCCGAAGAGAGGAGCTGCCTGGCTGAGGTCTCCGT GGCCTTCCCGAAGAGAGGAGCTGCATGGCTGAGGTCTCCGT < 41bp 0.370196772018486 0.766294555579462 0.2311869 0.30360037 prediction 0.532589111158924 Functional Gain - HOXD10 ENSG00000128710 CDS Human protein_coding chr2:176982251 chr2:176982255 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105525 0 0 1 0 1 exosome 0.500231643921092 0.500231665892597 0 4.39430085652504e-08 hm5C_site_58670 DeepMRMD:0;iRNA_m5C:4.39430085652504e-08 58671 chr10 81682463 81682463 1 + T G rs45550832 81682461 + 81682441 81682481 41 ATGTCTGGGAAGAAGCTTTTCGTGACCAATGGTGAGCGGAT ATGTCTGGGAAGAAGCTTTTCGGGACCAATGGTGAGCGGAT < 41bp 0.446405947851652 0.766285654951678 0.1663911 0.9079562 prediction 0.532571309903356 Functional Gain - MBL1P ENSG00000242600 ncRNA_exonic Human transcribed_unitary_pseudogene chr10:81682461 chr10:81682463 . . 0 23 hm5C_associated_SNPs_105526 0 0 1 1 0 unknown 0.500231643921093 0.500231643921092 0.8159124 0 hm5C_site_58671 DeepMRMD:0.8159124;iRNA_m5C:0 58672 chr5 140559014 140559014 1 + C G LUAD 140559010 + 140558990 140559030 41 CTGTTCGTCCGCGAGAACAACAGCCCCGCCCTGCACATCGG CTGTTCGTCCGCGAGAACAACAGCGCCGCCCTGCACATCGG < 41bp 0.482878430849787 0.766284305712559 0.21833208 0.6820258 prediction 0.532568611425118 Functional Gain - PCDHB8 ENSG00000120322 CDS Human protein_coding chr5:140559010 chr5:140559014 nonsynonymous SNV 0.989 3 25 hm5C_associated_SNPs_105527 0 0 0 0 0 exosome 0.500231643830577 0.499910338789836 0.3640516 0 hm5C_site_58672 DeepMRMD:0.3640516;iRNA_m5C:0 58673 chr5 140503914 140503914 1 + C G LGG 140503913 + 140503893 140503933 41 TAATCTCTTGGTTCAGGACACCGGGAGGGAAGTTAAGGAAA TAATCTCTTGGTTCAGGACACGGGGAGGGAAGTTAAGGAAA < 41bp 0.54298373892731 0.809263093102447 0.41773972 0.8131303 prediction 0.532558708350275 Functional Gain - PCDHB4 ENSG00000081818 CDS Human protein_coding chr5:140503913 chr5:140503914 synonymous SNV . 0 22 hm5C_associated_SNPs_105528 0 0 0 0 0 exosome 0.500231643967477 0.500231643921116 0.6262606 0 hm5C_site_58673 DeepMRMD:0.6262606;iRNA_m5C:0 58674 chr6 7403056 7403056 1 + T G UCEC 7403054 + 7403034 7403074 41 ATTTTTCTTATTCAAGATTTCGTCATGGCTATTGTAAAGGA ATTTTTCTTATTCAAGATTTCGGCATGGCTATTGTAAAGGA < 41bp 0.469390232268048 0.766277650721327 0.07754189 0.33500886 prediction 0.532555301442654 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7403054 chr6:7403056 synonymous SNV . 0 23 hm5C_associated_SNPs_105529 0 0 1 0 1 Ribosome 0.500231658510837 0.500231643973939 0 0 hm5C_site_58674 DeepMRMD:0;iRNA_m5C:0 58675 chr19 2245452 2245452 1 + C A KIRP 2245448 + 2245428 2245468 41 CTCCATCCTGTCCGCAGGGCCCGGCGAGCAGCCAAGGAGGC CTCCATCCTGTCCGCAGGGCCCGGAGAGCAGCCAAGGAGGC < 41bp 0.392190227303545 0.766273477126813 0.50751126 0.54557985 prediction 0.532546954253626 Functional Gain - SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2245448 chr19:2245452 synonymous SNV . 0 25 hm5C_associated_SNPs_105530 0 0 1 0 1 Cytosol 0.50023164341282 0.500231643921089 0.0761371799999999 1.01653663264756e-09 hm5C_site_58675 DeepMRMD:0.0761371799999999;iRNA_m5C:1.01653663264756e-09 58676 chr1 169094257 169094257 1 + T G KIRP 169094255 + 169094235 169094275 41 GATTCAGCCCAGAGGGATGACATGATTTTTGAAGATTGTGG GATTCAGCCCAGAGGGATGACAGGATTTTTGAAGATTGTGG < 41bp 0.59227489147532 0.858541841958445 0.039584607 0.11555505 prediction 0.532533900966251 Functional Gain - ATP1B1 ENSG00000143153 CDS Human protein_coding chr1:169094255 chr1:169094257 nonsynonymous SNV 0.990 1 23 hm5C_associated_SNPs_105531 0 0 1 0 1 Ribosome 0.500231643921113 0.500231643921092 0 0 hm5C_site_58676 DeepMRMD:0;iRNA_m5C:0 58677 chr3 159706940 159706940 1 + C A UCEC 159706936 + 159706916 159706956 41 CGCCCTGTGTCCCTGCAGTGCCGGCTCAGCATGTGTCCAGC CGCCCTGTGTCCCTGCAGTGCCGGATCAGCATGTGTCCAGC < 41bp 0.626917042171303 0.893181819766593 0.14613333 0.36673653 prediction 0.53252955519058 Functional Gain - IL12A ENSG00000168811 CDS Human protein_coding chr3:159706936 chr3:159706940 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_105532 0 0 0 0 1 exosome 0.500231644566895 0.500232165571885 0 1.04200997963488e-06 hm5C_site_58677 DeepMRMD:0;iRNA_m5C:1.04200997963488e-06 58678 chr11 22363195 22363195 1 + C A LUAD 22363191 + 22363171 22363211 41 TGCACGTGCTTCGGCCTGCCCCGCCGCTACATTATCGCCAT TGCACGTGCTTCGGCCTGCCCCGCAGCTACATTATCGCCAT < 41bp 0.648441600307239 0.91469069177692 0.09131575 0.13648042 prediction 0.532498182939362 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363191 chr11:22363195 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105533 0 0 0 0 0 unknown 0.500231643910144 0.500231643904638 0 0 hm5C_site_58678 DeepMRMD:0;iRNA_m5C:0 58679 chr16 2757937 2757937 1 + C G rs74969856 2757936 + 2757916 2757956 41 CCAACCCCACCTGACCAAGCCCGGGACAGTCAAGGCTTCTC CCAACCCCACCTGACCAAGCCGGGGACAGTCAAGGCTTCTC < 41bp 0.55973192664149 0.825980634430443 0.6038097 0.9012949 prediction 0.532497415577906 Functional Gain - KCTD5 ENSG00000167977 UTR3 Human protein_coding chr16:2757936 chr16:2757937 . . 0 22 hm5C_associated_SNPs_105534 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.5949704 0 hm5C_site_58679 DeepMRMD:0.5949704;iRNA_m5C:0 58680 chr19 36277855 36277855 1 + C G rs199669285 36277854 + 36277834 36277874 41 CCCCAACACCAGCTCTCAGCCCCGGCCGGAGCCTGCGCCCC CCCCAACACCAGCTCTCAGCCGCGGCCGGAGCCTGCGCCCC < 41bp 0.574329809515484 0.840560614057476 0.10533208 0.49752286 prediction 0.532461609083984 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36277854 chr19:36277855 nonsynonymous SNV 0.511 0 22 hm5C_associated_SNPs_105535 0 0 1 0 1 chromatin 0.500231643921093 0.500231643921092 0 0 hm5C_site_58680 DeepMRMD:0;iRNA_m5C:0 58681 chr19 58117636 58117636 1 + T C UCEC 58117634 + 58117614 58117654 41 TGCAGTGAATGTGGGAAATCCTTTAGTCAAAGTTCTGGCTT TGCAGTGAATGTGGGAAATCCTCTAGTCAAAGTTCTGGCTT < 41bp 0.507694215696795 0.773915487803089 0.089946955 0.8846841 prediction 0.532442544212588 Functional Gain - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58117634 chr19:58117636 nonsynonymous SNV 0.012 3 23 hm5C_associated_SNPs_105536 0 0 1 0 0 Nucleus 0.500231637545937 0.500227457791169 0.7693682 0 hm5C_site_58681 DeepMRMD:0.7693682;iRNA_m5C:0 58682 chr5 140502272 140502272 1 + T A SKCM 140502268 + 140502248 140502288 41 GCACGGTCATGGTTCGAATCCTGATCATGGACATCAATGAC GCACGGTCATGGTTCGAATCCTGAACATGGACATCAATGAC < 41bp 0.453875799014924 0.766220129522401 0.0397107 0.068692625 prediction 0.532440259044802 Functional Gain - PCDHB4 ENSG00000081818 CDS Human protein_coding chr5:140502268 chr5:140502272 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_105537 0 0 0 0 0 exosome 0.500224044324619 0.500231629399841 0 1.51701504436108e-05 hm5C_site_58682 DeepMRMD:0;iRNA_m5C:1.51701504436108e-05 58683 chr18 77246359 77246359 1 + C G ESCA 77246355 + 77246335 77246375 41 GACCATACTACAGCCAGCAGCTCGCGATGCCACCCGACCCC GACCATACTACAGCCAGCAGCTCGGGATGCCACCCGACCCC < 41bp 0.518692152142653 0.784907230424356 0.114889115 0.38773978 prediction 0.532430156563406 Functional Gain - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77246355 chr18:77246359 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105538 0 0 0 0 0 Cytosol 0.500231643921092 0.50023164392252 0 2.85571566394083e-12 hm5C_site_58683 DeepMRMD:0;iRNA_m5C:2.85571566394083e-12 58684 chr6 149915654 149915654 1 + T A rs9765961 149915650 + 149915630 149915670 41 AGACCACAGGCTGCCGTGGCCGCATCGTGGGTGTGTCTAAG AGACCACAGGCTGCCGTGGCCGCAACGTGGGTGTGTCTAAG < 41bp 0.548031208081217 0.814243873007582 0.16481763 0.25510693 prediction 0.53242532985273 Functional Gain - RPS18P9 ENSG00000220848 ncRNA_exonic Human processed_pseudogene chr6:149915650 chr6:149915654 . . 0 25 hm5C_associated_SNPs_105539 0 0 1 0 0 unknown 0.500231643888704 0.50023164389679 0 1.61710644874802e-11 hm5C_site_58684 DeepMRMD:0;iRNA_m5C:1.61710644874802e-11 58685 chr7 16793471 16793471 1 + C A rs561850660 16793467 + 16793447 16793487 41 CTGCAGCCCCAGGCCCCGGCCCCCCACCCACGTCTGCGTTG CTGCAGCCCCAGGCCCCGGCCCCCAACCCACGTCTGCGTTG < 41bp 0.449078322696503 0.766202322113549 0.2307348 0.4218958 prediction 0.532404644227099 Functional Gain - TSPAN13 ENSG00000106537 UTR5 Human protein_coding chr7:16793467 chr7:16793471 . . 0 25 hm5C_associated_SNPs_105540 0 0 1 0 0 Ribosome 0.500231641899815 0.50023167692637 0 7.00531106456737e-08 hm5C_site_58685 DeepMRMD:0;iRNA_m5C:7.00531106456737e-08 58686 chr13 43136983 43136983 1 + C G rs116485194 43136982 + 43136962 43137002 41 ACAACAAGGCAGAATGTGTACCAGGGATGTGACGTGGGGAA ACAACAAGGCAGAATGTGTACGAGGGATGTGACGTGGGGAA < 41bp 0.491790379197047 0.766195648870144 0.51195806 0.86793816 prediction 0.532391297740287 Functional Gain - TNFSF11 ENSG00000120659 UTR5 Human protein_coding chr13:43136982 chr13:43136983 . . 0 22 hm5C_associated_SNPs_105541 0 0 0 0 0 exosome 0.500231643425133 0.500231643921033 0.7119602 9.91799753435885e-10 hm5C_site_58686 DeepMRMD:0.7119602;iRNA_m5C:9.91799753435885e-10 58687 chr8 144295154 144295154 1 + C A rs61747644 144295150 + 144295130 144295170 41 AGCGTCCGGCGAGATGAAGGCGCTCGGGGCTGTCCTGCTTG AGCGTCCGGCGAGATGAAGGCGCTAGGGGCTGTCCTGCTTG < 41bp 0.391850559469454 0.766179288282808 0.2942505 0.7276577 prediction 0.532358576565615 Functional Gain - GPIHBP1 ENSG00000182851 CDS Human other chr8:144295150 chr8:144295154 synonymous SNV . 0 25 hm5C_associated_SNPs_105542 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.4553154 0 hm5C_site_58687 DeepMRMD:0.4553154;iRNA_m5C:0 58688 chr8 144343999 144343999 1 + C A rs571715172 144343995 + 144343975 144344015 41 ACCCGCACCCCTGCACCTGCCACGCCTGTCTCCGGCAGCCC ACCCGCACCCCTGCACCTGCCACGACTGTCTCCGGCAGCCC < 41bp 0.456745403824349 0.766151739822514 0.11618808 0.14457077 prediction 0.532303479645029 Functional Gain - ZFP41 ENSG00000181638 UTR3 Human protein_coding chr8:144343995 chr8:144343999 . . 0 25 hm5C_associated_SNPs_105543 0 0 1 0 0 chromatin 0.500231643899211 0.500231596867822 0 0 hm5C_site_58688 DeepMRMD:0;iRNA_m5C:0 58689 chr8 11142190 11142190 1 + C G rs370839560 11142186 + 11142166 11142206 41 CGGGAGAGGCGCTTGGGCCTCGTCCAGCCCCAGCCCCTGTC CGGGAGAGGCGCTTGGGCCTCGTCGAGCCCCAGCCCCTGTC < 41bp 0.492451275239015 0.766145096139237 0.2809576 0.1211777 prediction 0.532290192278475 Functional Gain - MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142186 chr8:11142190 . . 0 25 hm5C_associated_SNPs_105544 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58689 DeepMRMD:0;iRNA_m5C:0 58690 chr6 31540548 31540548 1 + C A LUAD 31540544 + 31540524 31540564 41 CACCACCTGAACGTCTCTTCCTCCCAAGGGTGTGTGGCACC CACCACCTGAACGTCTCTTCCTCCAAAGGGTGTGTGGCACC < 41bp 0.396923224552322 0.766141593406788 0.20186764 0.9709858 prediction 0.532283186813576 Functional Gain - LTA ENSG00000226979 CDS Human protein_coding chr6:31540544 chr6:31540548 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105545 0 0 0 0 2 exosome 0.500231643525133 0.500231642237034 0.9419716 0 hm5C_site_58690 DeepMRMD:0.9419716;iRNA_m5C:0 58691 chr3 41266103 41266103 1 + G C ACC 41266104 - 41266084 41266124 41 TAGTGGCACCAGAATGGATTCCAGAGTCCAGGTAAGACTGT TAGTGGCACCAGAATGGATTCGAGAGTCCAGGTAAGACTGT < 41bp 0.561018360860774 0.827146678478385 0.68668604 0.8969135 prediction 0.532256635235221 Functional Gain - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41266104 chr3:41266103 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_105546 10 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0.42045492 8.88178419700125e-16 hm5C_site_58691 DeepMRMD:0.42045492;iRNA_m5C:8.88178419700125e-16 Adenocarcinoma of stomach Adenocarcinoma of stomach 58692 chr11 5373081 5373081 1 + C G HNSC 5373077 + 5373057 5373097 41 TCATGGAGTCAGGTGTCTTGCTTGCCATGGCTTATGACTGT TCATGGAGTCAGGTGTCTTGCTTGGCATGGCTTATGACTGT < 41bp 0.490296007808013 0.766123581708312 0.108220905 0.12479511 prediction 0.532247163416623 Functional Gain - OR51B6 ENSG00000176239 CDS Human protein_coding chr11:5373077 chr11:5373081 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_105547 0 0 0 0 0 unknown 0.50023164548574 0.500231643915796 0 0 hm5C_site_58692 DeepMRMD:0;iRNA_m5C:0 58693 chr20 5100551 5100551 1 + C G rs1131338 5100550 + 5100530 5100570 41 GCGGGCGAACGTCGCGACGACCGGCTGAGACCTAGAAAGAC GCGGGCGAACGTCGCGACGACGGGCTGAGACCTAGAAAGAC < 41bp 0.519147862032759 0.785264179905645 0.84666455 0.86163175 prediction 0.532232635745773 Functional Gain - PCNA-AS1 ENSG00000132646 UTR5 Human protein_coding chr20:5100550 chr20:5100551 . . 0 22 hm5C_associated_SNPs_105548 0 0 0 0 0 unknown 0.500231658810464 0.500231643934079 0.0299344000000001 0 hm5C_site_58693 DeepMRMD:0.0299344000000001;iRNA_m5C:0 58694 chr2 113832335 113832335 1 + C G LUAD 113832334 + 113832314 113832354 41 CTTCCTAACAGAGGCTTGGCCCGCACCAAGGTCCCCATTTT CTTCCTAACAGAGGCTTGGCCGGCACCAAGGTCCCCATTTT < 41bp 0.583146022061792 0.849259381456986 0.14229026 0.5633862 prediction 0.532226718790388 Functional Gain - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113832334 chr2:113832335 nonsynonymous SNV 0.968 1 22 hm5C_associated_SNPs_105549 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0.1267724 0 hm5C_site_58694 DeepMRMD:0.1267724;iRNA_m5C:0 58695 chr14 75762961 75762961 1 + C A rs185368128 75762957 + 75762937 75762977 41 GTTCTTGGAGTTACAGCAGCCCCGCGGCAGCTCTGCCCCCT GTTCTTGGAGTTACAGCAGCCCCGAGGCAGCTCTGCCCCCT < 41bp 0.633245316984089 0.899331719211227 0.41365364 0.2802913 prediction 0.532172804454277 Functional Gain - LINC01220 ENSG00000259687 ncRNA_exonic Human lincRNA chr14:75762957 chr14:75762961 . . 0 25 hm5C_associated_SNPs_105550 0 0 0 0 0 unknown 0.500231643928915 0.500231645310118 0 2.76240608165779e-09 hm5C_site_58695 DeepMRMD:0;iRNA_m5C:2.76240608165779e-09 58696 chr7 123264689 123264689 1 + C A STAD 123264685 + 123264665 123264705 41 AACATAACACTAGCCTAGACCAGCCCTGTGTCAAGCGATGG AACATAACACTAGCCTAGACCAGCACTGTGTCAAGCGATGG < 41bp 0.349047408826601 0.766083671912564 0.04978189 0.099742085 prediction 0.532167343825127 Functional Gain - ASB15 ENSG00000146809 CDS Human protein_coding chr7:123264685 chr7:123264689 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_105551 0 0 0 0 1 exosome 0.500231643935803 0.500231644323175 0 7.74743380560494e-10 hm5C_site_58696 DeepMRMD:0;iRNA_m5C:7.74743380560494e-10 58697 chr1 248524910 248524910 1 + C A LUSC 248524906 + 248524886 248524926 41 GACAACATCACCTGGATGGCCAGCCACACTGGATGGTCGGA GACAACATCACCTGGATGGCCAGCAACACTGGATGGTCGGA < 41bp 0.393875811245696 0.766073507028112 0.22274253 0.21636036 prediction 0.532147014056225 Functional Gain - OR2T4 ENSG00000196944 CDS Human protein_coding chr1:248524906 chr1:248524910 nonsynonymous SNV 0.033 1 25 hm5C_associated_SNPs_105552 0 0 0 0 0 unknown 0.500231219978989 0.500239815256041 0 1.7190554103319e-05 hm5C_site_58697 DeepMRMD:0;iRNA_m5C:1.7190554103319e-05 58698 chr6 50683050 50683050 1 + C G LUSC 50683046 + 50683026 50683066 41 GCACAGCCACCCGGCCGTCACCCCCGACGCCTACTCTCTGA GCACAGCCACCCGGCCGTCACCCCGGACGCCTACTCTCTGA < 41bp 0.481892057949934 0.766071286277543 0.10988781 0.2566761 prediction 0.532142572555086 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683046 chr6:50683050 synonymous SNV . 0 25 hm5C_associated_SNPs_105553 0 0 0 1 0 unknown 0.500231643921112 0.500231643921093 0 0 hm5C_site_58698 DeepMRMD:0;iRNA_m5C:0 58699 chr11 56949631 56949631 1 + T G UCEC 56949628 + 56949608 56949648 41 TGCCCCGTCCTTTGCACATGCCGTAACCAGGTGGTGGATTG TGCCCCGTCCTTTGCACATGCCGGAACCAGGTGGTGGATTG < 41bp 0.367689539831533 0.766069830490757 0.1724576 0.4093522 prediction 0.532139660981514 Functional Gain - LRRC55 ENSG00000183908 CDS Human protein_coding chr11:56949628 chr11:56949631 synonymous SNV . 0 24 hm5C_associated_SNPs_105554 0 0 0 0 0 exosome 0.500231651412521 0.500231651093811 0 0 hm5C_site_58699 DeepMRMD:0;iRNA_m5C:0 58700 chr2 26502945 26502945 1 + C A HNSC 26502941 + 26502921 26502961 41 AAACTAAAACCTGCATTCATCAAGCCCTACGGCACAGTGAC AAACTAAAACCTGCATTCATCAAGACCTACGGCACAGTGAC < 41bp 0.357573133739398 0.766065110043802 0.58022785 0.7624316 prediction 0.532130220087604 Functional Gain - HADHB ENSG00000138029 CDS Human protein_coding chr2:26502941 chr2:26502945 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_105555 0 0 1 0 2 Ribosome 0.500231766984994 0.500231643933111 0.3644075 0 hm5C_site_58700 DeepMRMD:0.3644075;iRNA_m5C:0 58701 chr19 2852732 2852732 1 + T G UCEC 2852729 + 2852709 2852749 41 AATCGGCATGTAAGGATTCACACTGCTGAGAAAACCTACGA AATCGGCATGTAAGGATTCACACGGCTGAGAAAACCTACGA < 41bp 0.397391721810939 0.766064240243913 0.11393222 0.25827354 prediction 0.532128480487825 Functional Gain - ZNF555 ENSG00000186300 CDS Human protein_coding chr19:2852729 chr19:2852732 synonymous SNV . 0 24 hm5C_associated_SNPs_105556 0 0 1 0 0 Cytosol 0.500231644998713 0.500231644408867 0 0 hm5C_site_58701 DeepMRMD:0;iRNA_m5C:0 58702 chr10 75542205 75542205 1 + C G UCEC 75542204 + 75542184 75542224 41 TGCCGCGAGGGCTCAGGTGACCGATGGCTCCTGGGGTGCTT TGCCGCGAGGGCTCAGGTGACGGATGGCTCCTGGGGTGCTT < 41bp 0.572890071526189 0.838947603277512 0.4723808 0.86304677 prediction 0.532115063502647 Functional Gain - CHCHD1 ENSG00000172586 CDS Human protein_coding chr10:75542204 chr10:75542205 synonymous SNV . 0 22 hm5C_associated_SNPs_105557 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921094 0.72609354 2.22044604925031e-15 hm5C_site_58702 DeepMRMD:0.72609354;iRNA_m5C:2.22044604925031e-15 Bipolar I disorder 58703 chr3 129043409 129043409 1 + C G rs10934880 129043408 + 129043388 129043428 41 CTAAAAATAAAAAAAATTAGCCGGGCGTGGTGGTGTGCGCC CTAAAAATAAAAAAAATTAGCGGGGCGTGGTGGTGTGCGCC < 41bp 0.529788956076584 0.795822249056922 0.61336845 0.90982664 prediction 0.532066585960677 Functional Gain - H1FX-AS1 ENSG00000206417 ncRNA_exonic Human antisense chr3:129043408 chr3:129043409 . . 0 22 hm5C_associated_SNPs_105558 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.59291638 0 hm5C_site_58703 DeepMRMD:0.59291638;iRNA_m5C:0 58704 chr11 17373464 17373464 1 + C A rs72865007 17373460 + 17373440 17373480 41 TCTCCCCCTGCCCTTGGTTTCTACCGGGCCGCCTGCTCCCA TCTCCCCCTGCCCTTGGTTTCTACAGGGCCGCCTGCTCCCA < 41bp 0.473466239120127 0.766025580900594 0.032815933 0.9347009 prediction 0.532051161801189 Functional Gain - NCR3LG1 ENSG00000188211 UTR5 Human protein_coding chr11:17373460 chr11:17373464 . . 0 25 hm5C_associated_SNPs_105559 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0.8694018 0 hm5C_site_58704 DeepMRMD:0.8694018;iRNA_m5C:0 58705 chr20 45644876 45644876 1 + T A OV 45644872 + 45644852 45644892 41 CCTGGCCAGAGTGGATTCCTCAGCTATGGCTCCAGCTTCAG CCTGGCCAGAGTGGATTCCTCAGCAATGGCTCCAGCTTCAG < 41bp 0.598319460767695 0.864339373465851 0.14620274 0.18646592 prediction 0.532039825396312 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45644872 chr20:45644876 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_105560 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643920802 0 0 hm5C_site_58705 DeepMRMD:0;iRNA_m5C:0 58706 chrX 142967530 142967530 1 + C G LUAD 142967529 + 142967509 142967549 41 CGCACAGTTCTGCTATCGATCCAGGCCTTGTTAAATGCTCC CGCACAGTTCTGCTATCGATCGAGGCCTTGTTAAATGCTCC < 41bp 0.465251745424269 0.766013315268218 0.8723639 0.93396425 prediction 0.532026630536435 Functional Gain - UBE2NL ENSG00000102069 CDS Human other chrX:142967529 chrX:142967530 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_105561 0 0 0 0 0 unknown 0.500231643927418 0.500231643921093 0.1232007 0 hm5C_site_58706 DeepMRMD:0.1232007;iRNA_m5C:0 58707 chr17 26861777 26861777 1 + C A BLCA 26861773 + 26861753 26861793 41 GAGAGAAAAGCTGGGCTCCCCACTCCTGGGCTGTCCGCCCC GAGAGAAAAGCTGGGCTCCCCACTACTGGGCTGTCCGCCCC < 41bp 0.34900757775331 0.765992757361412 0.24837357 0.28825474 prediction 0.531985514722825 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26861773 chr17:26861777 synonymous SNV . 0 25 hm5C_associated_SNPs_105562 0 0 0 0 1 exosome 0.500231643927786 0.500231643921172 0 0 hm5C_site_58707 DeepMRMD:0;iRNA_m5C:0 58708 chrX 153420204 153420204 1 + C G BLCA 153420200 + 153420180 153420220 41 TCTGCTACCTCCAAGTGTGGCTGGCCATCCGAGCGGTAAGC TCTGCTACCTCCAAGTGTGGCTGGGCATCCGAGCGGTAAGC < 41bp 0.483395781013575 0.76597302105143 0.11213541 0.16358218 prediction 0.53194604210286 Functional Gain - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153420200 chrX:153420204 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105563 0 0 0 0 1 unknown 0.500225987125885 0.500231643921092 0 1.13135904142858e-05 hm5C_site_58708 DeepMRMD:0;iRNA_m5C:1.13135904142858e-05 58709 chr16 681279 681279 1 + C G rs141017859 681275 + 681255 681295 41 TGCCCGCCCTACGTCCACTCCTGCCGCTCCTGCTCCTCCTC TGCCCGCCCTACGTCCACTCCTGCGGCTCCTGCTCCTCCTC < 41bp 0.489496067777769 0.765968520936037 0.39302033 0.54782027 prediction 0.531937041872074 Functional Gain - WFIKKN1 ENSG00000127578 CDS Human protein_coding chr16:681275 chr16:681279 nonsynonymous SNV 0.019 0 25 hm5C_associated_SNPs_105564 0 0 0 0 0 exosome 0.500231643248966 0.500231643920173 0.09564054 1.34241373572763e-09 hm5C_site_58709 DeepMRMD:0.09564054;iRNA_m5C:1.34241373572763e-09 58710 chr5 90676606 90676606 1 + C G rs138968758 90676605 + 90676585 90676625 41 GCCATCCAGCACCTGTAAGGCCGGCAGGAGCGTCTGCCCTC GCCATCCAGCACCTGTAAGGCGGGCAGGAGCGTCTGCCCTC < 41bp 0.55001642201487 0.815967610526019 0.16505632 0.3994956 prediction 0.531902377022298 Functional Gain - ARRDC3-AS1 ENSG00000113369 intronic Human protein_coding chr5:90676605 chr5:90676606 . . 0 22 hm5C_associated_SNPs_105565 0 0 1 0 0 unknown 0.50020336263815 0.500231644965917 0 5.65646555343857e-05 hm5C_site_58710 DeepMRMD:0;iRNA_m5C:5.65646555343857e-05 58711 chr11 55541505 55541505 1 + C A rs74548274 55541501 + 55541481 55541521 41 TCCTACTCAGACCCCTATATCAGCCAGAGGCTATGCTTTAT TCCTACTCAGACCCCTATATCAGCAAGAGGCTATGCTTTAT < 41bp 0.642560064008232 0.908493370423469 0.50481164 0.78200996 prediction 0.531866612830475 Functional Gain - OR5D13 ENSG00000198877 CDS Human other chr11:55541501 chr11:55541505 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105566 0 0 0 0 0 unknown 0.500231643921095 0.500231643921099 0.55439664 7.99360577730113e-15 hm5C_site_58711 DeepMRMD:0.55439664;iRNA_m5C:7.99360577730113e-15 58712 chr19 7978718 7978718 1 + C G rs184711481 7978717 + 7978697 7978737 41 CAACACCAAAGGCGCAGAAGCCGGCTGGCCGTGGTGGGGGC CAACACCAAAGGCGCAGAAGCGGGCTGGCCGTGGTGGGGGC < 41bp 0.497190344871802 0.765924860718762 0.39048755 0.87489885 prediction 0.531849721437524 Functional Gain - MAP2K7 ENSG00000076984 UTR3 Human protein_coding chr19:7978717 chr19:7978718 . . 0 22 hm5C_associated_SNPs_105567 0 0 1 0 0 Cytosol 0.500238041204576 0.500233079890655 0.7497977 0 hm5C_site_58712 DeepMRMD:0.7497977;iRNA_m5C:0 58713 chr3 142405191 142405191 1 + C A rs41265481 142405187 + 142405167 142405207 41 TAAAGGTGGGGAAGATGGACCTGCCATTGCCATTGACCTTT TAAAGGTGGGGAAGATGGACCTGCAATTGCCATTGACCTTT < 41bp 0.347709293315724 0.76592448000654 0.06440091 0.20759878 prediction 0.53184896001308 Functional Gain - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142405187 chr3:142405191 synonymous SNV . 0 25 hm5C_associated_SNPs_105568 0 0 0 0 2 Nucleus 0.500231643918757 0.500231643921094 0 4.67315075525221e-12 hm5C_site_58713 DeepMRMD:0;iRNA_m5C:4.67315075525221e-12 Platelet count 58714 chr1 101704599 101704599 1 + T C UCEC 101704597 + 101704577 101704617 41 CGCAGCTCGGTCTCTGACTACGTCAACTATGATATCATCGT CGCAGCTCGGTCTCTGACTACGCCAACTATGATATCATCGT < 41bp 0.496115544000177 0.765919614600302 0.1699352 0.11472538 prediction 0.531839229200604 Functional Gain - S1PR1 ENSG00000170989 CDS Human protein_coding chr1:101704597 chr1:101704599 nonsynonymous SNV 0.606 0 23 hm5C_associated_SNPs_105569 0 0 0 0 0 Endoplasmic reticulum 0.500231646960834 0.500231638606514 0 0 hm5C_site_58714 DeepMRMD:0;iRNA_m5C:0 58715 chr12 31754781 31754781 1 + C A rs145576859 31754777 + 31754757 31754797 41 AGTGATCTGCACTAGAGCTTCAGGCAGCTAAGGTAGGCTTT AGTGATCTGCACTAGAGCTTCAGGAAGCTAAGGTAGGCTTT < 41bp 0.409146844317932 0.765919003213351 0.8501844 0.8789398 prediction 0.531838006426702 Functional Gain - DENND5B-AS1 ENSG00000255867 ncRNA_exonic Human antisense chr12:31754777 chr12:31754781 . . 0 25 hm5C_associated_SNPs_105570 0 0 0 0 1 unknown 0.500231643921093 0.500231643921092 0.0575108000000002 0 hm5C_site_58715 DeepMRMD:0.0575108000000002;iRNA_m5C:0 58716 chr11 66330572 66330572 1 + C A OV 66330568 + 66330548 66330588 41 AAGCAGGCCGAGTACTGCATCCGCCGTATGGTGCCCTACAA AAGCAGGCCGAGTACTGCATCCGCAGTATGGTGCCCTACAA < 41bp 0.382437500610327 0.765916989551454 0.1683906 0.2086317 prediction 0.531833979102907 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66330568 chr11:66330572 unknown 0.829 2 25 hm5C_associated_SNPs_105571 0 0 0 0 1 Cytosol 0.500231837002581 0.500231935357968 0 1.96710774114095e-07 hm5C_site_58716 DeepMRMD:0;iRNA_m5C:1.96710774114095e-07 58717 chr19 48216657 48216657 1 + C G rs753269 48216656 + 48216636 48216676 41 TGTCCTCCCTCCCGTCCTCCCCGCTCCGGGCCCCACCCGGC TGTCCTCCCTCCCGTCCTCCCGGCTCCGGGCCCCACCCGGC < 41bp 0.475065712860428 0.765913995110562 0.12065905 0.2947482 prediction 0.531827990221124 Functional Gain - EHD2 ENSG00000268746 ncRNA_intronic Human lincRNA chr19:48216656 chr19:48216657 . . 0 22 hm5C_associated_SNPs_105572 0 0 0 0 0 Nucleus 0.500231643921118 0.500231643921092 0 0 hm5C_site_58717 DeepMRMD:0;iRNA_m5C:0 58718 chr20 29625891 29625891 1 + C G BLCA 29625887 + 29625867 29625907 41 GTACAGAATCGCCCTGAAATCTGGCTATGGAAAATATCTTG GTACAGAATCGCCCTGAAATCTGGGTATGGAAAATATCTTG < 41bp 0.512910976097434 0.778821919902406 0.24666002 0.5965749 prediction 0.531821887609944 Functional Gain - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29625887 chr20:29625891 synonymous SNV . 0 25 hm5C_associated_SNPs_105573 0 0 1 0 2 unknown 0.500238835489927 0.500231643801539 0.1931498 0 hm5C_site_58718 DeepMRMD:0.1931498;iRNA_m5C:0 58719 chr11 3658556 3658556 1 + T G UCEC 3658554 + 3658534 3658574 41 GTGCACAACAGCTTCCAGAACCTGGGGCCTCCCATCCCTGA GTGCACAACAGCTTCCAGAACCGGGGGCCTCCCATCCCTGA < 41bp 0.433626436314863 0.765910560479474 0.8146417 0.9368521 prediction 0.531821120958948 Functional Gain - TRPC2 ENSG00000182048 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3658554 chr11:3658556 . . 0 23 hm5C_associated_SNPs_105574 0 0 0 0 0 unknown 0.500231593577295 0.500231642604529 0.2444208 9.80544678785833e-08 hm5C_site_58719 DeepMRMD:0.2444208;iRNA_m5C:9.80544678785833e-08 58720 chr11 96074650 96074650 1 + T A UCEC 96074646 + 96074626 96074666 41 CCATTATTGCTACTGTTCAGCAGGTGCTGCTGGTGGTGATG CCATTATTGCTACTGTTCAGCAGGAGCTGCTGGTGGTGATG < 41bp 0.516915155517497 0.7828191655255 0.8470317 0.7632386 prediction 0.531808020016005 Functional Gain - MAML2 ENSG00000184384 CDS Human protein_coding chr11:96074646 chr11:96074650 nonsynonymous SNV 0.999 0 25 hm5C_associated_SNPs_105575 0 0 0 0 0 Nucleus 0.500231643739182 0.500231644132981 0 7.87599319096444e-10 hm5C_site_58720 DeepMRMD:0;iRNA_m5C:7.87599319096444e-10 58721 chr5 140626491 140626491 1 + C A COAD 140626487 + 140626467 140626507 41 GTGTCGGACGTCAATGACAACGCCCCCGCCTTCACCCAAAC GTGTCGGACGTCAATGACAACGCCACCGCCTTCACCCAAAC < 41bp 0.361439054611679 0.765899306439749 0.0961791 0.08654228 prediction 0.531798612879497 Functional Gain - PCDHB15 ENSG00000113248 CDS Human protein_coding chr5:140626487 chr5:140626491 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_105576 0 0 0 0 0 exosome 0.500229644832735 0.500231669090591 0 4.04851571045306e-06 hm5C_site_58721 DeepMRMD:0;iRNA_m5C:4.04851571045306e-06 58722 chr1 155011920 155011920 1 + T G LUAD 155011917 + 155011897 155011937 41 GGGGGACCTCCCCTCACATCCGCTGTGCCAGCCTCCTACTA GGGGGACCTCCCCTCACATCCGCGGTGCCAGCCTCCTACTA < 41bp 0.646565154753111 0.912456328850377 0.12569064 0.5114734 prediction 0.531782348194532 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155011917 chr1:155011920 nonsynonymous SNV 1.000 3 24 hm5C_associated_SNPs_105577 0 0 0 0 2 nucleus 0.500231643921111 0.500231643921092 0.0229467999999999 0 hm5C_site_58722 DeepMRMD:0.0229467999999999;iRNA_m5C:0 58723 chr17 33588006 33588006 1 + T C UCEC 33588004 + 33587984 33588024 41 CCTAAGACCTTTCCAGGTGTCCTGAGATGGTTCTCCAGTTG CCTAAGACCTTTCCAGGTGTCCCGAGATGGTTCTCCAGTTG < 41bp 0.500202647849491 0.766077215837083 0.23267934 0.2092855 prediction 0.531749135975184 Functional Gain - SLFN5 ENSG00000166750 CDS Human protein_coding chr17:33588004 chr17:33588006 synonymous SNV . 0 23 hm5C_associated_SNPs_105578 0 0 0 0 1 nucleus 0.500231643392764 0.500231643921095 0 1.05666098093593e-09 hm5C_site_58723 DeepMRMD:0;iRNA_m5C:1.05666098093593e-09 58724 chr7 116164939 116164939 1 + C A rs543259116 116164935 + 116164915 116164955 41 CCTAGACCCGGCGCAGCACACGTCCGGGCCAACCGCGAGCA CCTAGACCCGGCGCAGCACACGTCAGGGCCAACCGCGAGCA < 41bp 0.394305637966196 0.765868353424546 0.21492267 0.13317448 prediction 0.531736706849091 Functional Gain - CAV1 ENSG00000105974 UTR5 Human protein_coding chr7:116164935 chr7:116164939 . . 0 25 hm5C_associated_SNPs_105579 0 0 0 0 0 Ribosome 0.500231972337264 0.500314655912209 0 0.000165367149890461 hm5C_site_58724 DeepMRMD:0;iRNA_m5C:0.000165367149890461 58725 chr10 129705413 129705413 1 + C A rs559123679 129705409 + 129705389 129705429 41 CGGACAGCGGGCGGCAGGAGCCGGCGCGAGCGGCTTCAGGA CGGACAGCGGGCGGCAGGAGCCGGAGCGAGCGGCTTCAGGA < 41bp 0.600345431463919 0.866191986649521 0.88502437 0.91836673 prediction 0.531693110371203 Functional Gain - PTPRE ENSG00000132334 UTR5 Human protein_coding chr10:129705409 chr10:129705413 . . 0 25 hm5C_associated_SNPs_105580 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.06668472 0 hm5C_site_58725 DeepMRMD:0.06668472;iRNA_m5C:0 58726 chr15 29398898 29398898 1 + C A HNSC 29398894 + 29398874 29398914 41 CCATCCTGCCCACGGTGATCCTGGCCAACATGATGAATGGC CCATCCTGCCCACGGTGATCCTGGACAACATGATGAATGGC < 41bp 0.35810285232838 0.765835591683468 0.8289125 0.8267596 prediction 0.531671183366936 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29398894 chr15:29398898 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105581 0 0 1 0 1 Cytosol 0.500231643918945 0.500231643781923 0 0 hm5C_site_58726 DeepMRMD:0;iRNA_m5C:0 58727 chr2 71780979 71780979 1 + T G SKCM 71780976 + 71780956 71780996 41 ACCCTGGGGTAACGTGAAACCTGTGGTGGTGCTGTCATCCT ACCCTGGGGTAACGTGAAACCTGGGGTGGTGCTGTCATCCT < 41bp 0.59385338052602 0.859685603190479 0.31178468 0.7699622 prediction 0.531664445328918 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71780976 chr2:71780979 nonsynonymous SNV 0.998 5 24 hm5C_associated_SNPs_105582 0 0 0 0 1 Nucleus 0.500231644811955 0.500231643919852 0.5399244 0 hm5C_site_58727 DeepMRMD:0.5399244;iRNA_m5C:0 58728 chr2 242501798 242501798 1 + C A UCEC 242501794 + 242501774 242501814 41 GAGATGATCCGGCCCAGCGTCTACCGCAACGTGGCGCGTCA GAGATGATCCGGCCCAGCGTCTACAGCAACGTGGCGCGTCA < 41bp 0.341507153919417 0.765828498164231 0.332013 0.9201411 prediction 0.531656996328463 Functional Gain - BOK ENSG00000176720 CDS Human protein_coding chr2:242501794 chr2:242501798 nonsynonymous SNV 0.959 3 25 hm5C_associated_SNPs_105583 0 0 1 0 2 Ribosome 0.500231647804941 0.500231644296339 0.8402822 0 hm5C_site_58728 DeepMRMD:0.8402822;iRNA_m5C:0 58729 chr1 159779906 159779906 1 + C A THCA 159779902 + 159779882 159779922 41 AGGTTCTCAAGTCTTGTTCACTCCCGCCAGCAACTGGCTGG AGGTTCTCAAGTCTTGTTCACTCCAGCCAGCAACTGGCTGG < 41bp 0.363220719983986 0.765826130189005 0.084778875 0.9055776 prediction 0.531652260378009 Functional Gain - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159779902 chr1:159779906 synonymous SNV . 0 25 hm5C_associated_SNPs_105584 0 0 0 0 1 exosome 0.500231643921093 0.500231651660638 0.8111552 1.54790917861192e-08 hm5C_site_58729 DeepMRMD:0.8111552;iRNA_m5C:1.54790917861192e-08 58730 chr19 36394703 36394703 1 + C G BLCA 36394699 + 36394679 36394719 41 TGTTCCGGATGTGGGTCCCTCTCTCTGCCGCTCCTGGCAGG TGTTCCGGATGTGGGTCCCTCTCTGTGCCGCTCCTGGCAGG < 41bp 0.536098038864112 0.801922825585024 0.62884593 0.42250782 prediction 0.531649573441823 Functional Gain - HCST ENSG00000126264 CDS Human protein_coding chr19:36394699 chr19:36394703 nonsynonymous SNV 0.572 2 25 hm5C_associated_SNPs_105585 0 0 0 0 1 nucleus 0.500231643802087 0.500231643738721 0 0 hm5C_site_58730 DeepMRMD:0;iRNA_m5C:0 58731 chr1 114442706 114442706 1 + T A LUAD 114442702 + 114442682 114442722 41 AAAAAAACTTTTTGTAGTGGCTGCTAAAGTGACCTGGTAAA AAAAAAACTTTTTGTAGTGGCTGCAAAAGTGACCTGGTAAA < 41bp 0.448863454260377 0.765822961285576 0.032340348 0.042118907 prediction 0.531645922571151 Functional Gain - AP4B1 ENSG00000134262 CDS Human protein_coding chr1:114442702 chr1:114442706 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105586 0 0 0 0 0 chromatin 0.500231643923178 0.500231643768924 0 0 hm5C_site_58731 DeepMRMD:0;iRNA_m5C:0 58732 chr12 51449970 51449970 1 + T G KIRC 51449967 + 51449947 51449987 41 AGCAATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTA AGCAATACATGATATCTTGGCTCGGAGAGAGTGTTTCTCTA < 41bp 0.388750491270889 0.765818071484068 0.051724374 0.11347622 prediction 0.531636142968136 Functional Gain - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449967 chr12:51449970 nonsynonymous SNV 0.147 3 24 hm5C_associated_SNPs_105587 0 0 1 0 2 chromatin 0.500231643921093 0.500231643921092 0 0 hm5C_site_58732 DeepMRMD:0;iRNA_m5C:0 58733 chr11 5776527 5776527 1 + T G rs201548672 5776524 + 5776504 5776544 41 TACCTACTGTGACCACATGTCTGTAGCCAAATTGTCCTGTG TACCTACTGTGACCACATGTCTGGAGCCAAATTGTCCTGTG < 41bp 0.63386503883505 0.899681869059697 0.021626264 0.1767056 prediction 0.531633660449293 Functional Gain - OR52N4 ENSG00000181074 CDS Human protein_coding chr11:5776524 chr11:5776527 nonsynonymous SNV 0.891 4 24 hm5C_associated_SNPs_105588 0 0 0 0 0 exosome 0.500231644042345 0.500231646642148 0 5.19960563494237e-09 hm5C_site_58733 DeepMRMD:0;iRNA_m5C:5.19960563494237e-09 58734 chr15 102516714 102516714 1 + T G COAD 102516712 + 102516692 102516732 41 CTGCGCCACTGTGTTCTTCTCTTAAGAGGCTTCCAGAGAAA CTGCGCCACTGTGTTCTTCTCTGAAGAGGCTTCCAGAGAAA < 41bp 0.509242601904523 0.7750543666196 0.09488246 0.2353284 prediction 0.531623529430153 Functional Gain - WASH3P ENSG00000185596;ENSG00000185596 ncRNA_exonic;splicing Human other chr15:102516712 chr15:102516714 . . 0 23 hm5C_associated_SNPs_105589 0 0 0 0 0 unknown 0.500231644521728 0.500238657727393 0 1.40264113306365e-05 hm5C_site_58734 DeepMRMD:0;iRNA_m5C:1.40264113306365e-05 58735 chr10 18292181 18292181 1 + T C BLCA 18292179 + 18292159 18292199 41 TTTATAAGCTCCCTAACTGCCTTCATGGGATTATACATTGG TTTATAAGCTCCCTAACTGCCTCCATGGGATTATACATTGG < 41bp 0.460635761680288 0.765811300573287 0.17960823 0.9719417 prediction 0.531622601146574 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18292179 chr10:18292181 nonsynonymous SNV 0.043 4 23 hm5C_associated_SNPs_105590 0 0 0 0 1 exosome 0.500231643921092 0.50023164392803 0.9438834 1.38757894063701e-11 hm5C_site_58735 DeepMRMD:0.9438834;iRNA_m5C:1.38757894063701e-11 58736 chr10 43606878 43606878 1 + C G LUAD 43606874 + 43606854 43606894 41 CCGACCAGCAGACCTCTAGGCAGGCCCAGGCCCAGCTGCTT CCGACCAGCAGACCTCTAGGCAGGGCCAGGCCCAGCTGCTT < 41bp 0.4680746040462 0.765810560660754 0.41623855 0.8969176 prediction 0.531621121321508 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43606874 chr10:43606878 nonsynonymous SNV 0.175 1 25 hm5C_associated_SNPs_105591 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.7938352 0 hm5C_site_58736 DeepMRMD:0.7938352;iRNA_m5C:0 58737 chr22 30125642 30125642 1 + C G rs563687450 30125641 + 30125621 30125661 41 CCTGCAGACCTCTCCCTTGGCCGGCTCCCTGGGCCGCCATC CCTGCAGACCTCTCCCTTGGCGGGCTCCCTGGGCCGCCATC < 41bp 0.482763937729932 0.765809005749298 0.7579216 0.93147266 prediction 0.531618011498596 Functional Gain - CABP7 ENSG00000100314 UTR3 Human protein_coding chr22:30125641 chr22:30125642 . . 0 22 hm5C_associated_SNPs_105592 0 0 0 0 0 exosome 0.500231643920771 0.500231643921092 0.34710212 6.42819131257966e-13 hm5C_site_58737 DeepMRMD:0.34710212;iRNA_m5C:6.42819131257966e-13 58738 chr1 203276998 203276998 1 + C G rs12063729 203276997 + 203276977 203277017 41 GTTCAGAGCTCTCTGTCTCCCCCAGCCAGACACCTGCATCC GTTCAGAGCTCTCTGTCTCCCGCAGCCAGACACCTGCATCC < 41bp 0.553807764472606 0.819610595016298 0.038838595 0.23926693 prediction 0.531605661087384 Functional Gain - BTG2 ENSG00000159388 UTR3 Human protein_coding chr1:203276997 chr1:203276998 . . 0 22 hm5C_associated_SNPs_105593 0 0 0 0 0 exosome 0.500231644855625 0.500238288277465 0 1.32868436795164e-05 hm5C_site_58738 DeepMRMD:0;iRNA_m5C:1.32868436795164e-05 58739 chr13 25254564 25254564 1 + C A rs572183998 25254560 + 25254540 25254580 41 GGGGTCCTCAATCCTGGACTCTCCCGACCCCTAGCTGTCGG GGGGTCCTCAATCCTGGACTCTCCAGACCCCTAGCTGTCGG < 41bp 0.403090924805263 0.765801931867854 0.155249 0.9562136 prediction 0.531603863735708 Functional Gain - ATP12A ENSG00000075673 UTR5 Human protein_coding chr13:25254560 chr13:25254564 . . 0 25 hm5C_associated_SNPs_105594 0 0 0 0 0 Nucleus 0.500231643921093 0.500231643921092 0.9124272 0 hm5C_site_58739 DeepMRMD:0.9124272;iRNA_m5C:0 58740 chr13 45151258 45151258 1 + T G rs548048576 45151255 + 45151235 45151275 41 GGCGGCTCCTTTCTCCGCGGCGTTGGTGGCCAGACGGGCTG GGCGGCTCCTTTCTCCGCGGCGTGGGTGGCCAGACGGGCTG < 41bp 0.405851512787742 0.765789933490756 0.27885073 0.5143034 prediction 0.531579866981513 Functional Gain - TSC22D1-AS1 ENSG00000102804 UTR5 Human protein_coding chr13:45151255 chr13:45151258 . . 0 24 hm5C_associated_SNPs_105595 0 0 0 0 2 unknown 0.500231645190518 0.500231643921092 0.0286067999999999 0 hm5C_site_58740 DeepMRMD:0.0286067999999999;iRNA_m5C:0 58741 chr5 140604566 140604566 1 + C G UCEC 140604562 + 140604542 140604582 41 TCGCTGCTGCCGCCCCAGGACCGGCACCTGCCCCTCGCCTC TCGCTGCTGCCGCCCCAGGACCGGGACCTGCCCCTCGCCTC < 41bp 0.539314862651374 0.80510464161702 0.28616565 0.85017836 prediction 0.531579557931291 Functional Gain - PCDHB14 ENSG00000120327 CDS Human protein_coding chr5:140604562 chr5:140604566 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_105596 0 0 0 0 0 exosome 0.500231644654094 0.500251457090859 0.70035672 3.96248735283766e-05 hm5C_site_58741 DeepMRMD:0.70035672;iRNA_m5C:3.96248735283766e-05 58742 chr18 21739506 21739506 1 + T A rs143434314 21739502 + 21739482 21739522 41 GTGGACCCTTTATTGTCTAACTGATAAGAATCAACAAGGTC GTGGACCCTTTATTGTCTAACTGAAAAGAATCAACAAGGTC < 41bp 0.455714194979088 0.765782651686827 0.099279344 0.09806442 prediction 0.531565303373653 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739502 chr18:21739506 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_105597 0 0 0 2 1 Nucleus 0.500231643920652 0.500231643929082 0 1.68589586735379e-11 hm5C_site_58742 DeepMRMD:0;iRNA_m5C:1.68589586735379e-11 58743 chr3 189526178 189526178 1 + C G UCEC 189526174 + 189526154 189526194 41 CAGAACAGCGTCACGGCGCCCTCGCCCTACGCACAGCCCAG CAGAACAGCGTCACGGCGCCCTCGGCCTACGCACAGCCCAG < 41bp 0.511438436543772 0.777219098531283 0.096408516 0.32374394 prediction 0.531561323975023 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189526174 chr3:189526178 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_105598 0 0 0 0 0 chromatin 0.500231643921101 0.500231644177229 0 5.12255127205208e-10 hm5C_site_58743 DeepMRMD:0;iRNA_m5C:5.12255127205208e-10 58744 chr6 44148718 44148718 1 + T C COAD 44148716 + 44148696 44148736 41 GGCCTGGATGCTTGCCGCTGCATGATCAACCTCATGGATGT GGCCTGGATGCTTGCCGCTGCACGATCAACCTCATGGATGT < 41bp 0.498864219314466 0.765770142846253 0.058564365 0.10396686 prediction 0.531540285692506 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44148716 chr6:44148718 nonsynonymous SNV 0.242 5 23 hm5C_associated_SNPs_105599 0 0 0 0 2 exosome 0.500231503444542 0.500231611538428 0 2.16187770574194e-07 hm5C_site_58744 DeepMRMD:0;iRNA_m5C:2.16187770574194e-07 58745 chr8 11142157 11142157 1 + C G rs73537130 11142156 + 11142136 11142176 41 CGAGTCCTAGGCCTGGTGAACCGCGCGGTGCGGGAGAGGCG CGAGTCCTAGGCCTGGTGAACGGCGCGGTGCGGGAGAGGCG < 41bp 0.547488764944454 0.813257670328775 0.35238048 0.54407626 prediction 0.531537810768643 Functional Gain - MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142156 chr8:11142157 . . 0 22 hm5C_associated_SNPs_105600 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921092 0.08815252 0 hm5C_site_58745 DeepMRMD:0.08815252;iRNA_m5C:0 58746 chr2 74757856 74757856 1 + C G BLCA 74757855 + 74757835 74757875 41 GTGGCTGATCGGCGCAGAGTCCGTGTGAGACTGCTAAGCGG GTGGCTGATCGGCGCAGAGTCGGTGTGAGACTGCTAAGCGG < 41bp 0.572769424824412 0.838536442941863 0.10009354 0.30194044 prediction 0.531534036234903 Functional Gain - HTRA2 ENSG00000115317 CDS Human protein_coding chr2:74757855 chr2:74757856 nonsynonymous SNV 0.968 5 22 hm5C_associated_SNPs_105601 0 0 1 0 1 exosome 0.500231643921315 0.500231643927383 0 1.21354037929677e-11 hm5C_site_58746 DeepMRMD:0;iRNA_m5C:1.21354037929677e-11 58747 chr17 4837132 4837132 1 + A C rs12940222 4837135 - 4837115 4837155 41 GGGGCGGGCTCTGAGGTGGGCTCTGGGGTGGTCGGGCTTGG GGGGCGGGCTCTGAGGTGGGCTCGGGGGTGGTCGGGCTTGG < 41bp 0.62969655434983 0.895456744206386 0.2732958 0.3314787 prediction 0.531520379713112 Functional Gain - GP1BA ENSG00000185245 CDS Human protein_coding chr17:4837135 chr17:4837132 synonymous SNV . 0 24 hm5C_associated_SNPs_105602 0 0 1 0 1 exosome 0.500231643718241 0.500231661056482 0 3.46764819081358e-08 hm5C_site_58747 DeepMRMD:0;iRNA_m5C:3.46764819081358e-08 58748 chr19 35760495 35760495 1 + C G LUAD 35760491 + 35760471 35760511 41 TCCTCGGCCCCAGGCGGGGACGGCCCAGGAGCGGAGGAGCA TCCTCGGCCCCAGGCGGGGACGGCGCAGGAGCGGAGGAGCA < 41bp 0.487752746425647 0.765751268057611 0.63240033 0.89665043 prediction 0.531502536115222 Functional Gain - USF2 ENSG00000105698 CDS Human protein_coding chr19:35760491 chr19:35760495 nonsynonymous SNV 0.957 1 25 hm5C_associated_SNPs_105603 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921629 0.5285002 1.0733636202076e-12 hm5C_site_58748 DeepMRMD:0.5285002;iRNA_m5C:1.0733636202076e-12 58749 chr1 44437275 44437275 1 + T C STAD 44437273 + 44437253 44437293 41 GACCCAGACCTTGACCCAGACCTGAGTCGGCTGCTCTTGGG GACCCAGACCTTGACCCAGACCCGAGTCGGCTGCTCTTGGG < 41bp 0.518630197473965 0.784375044702475 0.43206167 0.3776028 prediction 0.53148969445702 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44437273 chr1:44437275 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_105604 0 0 1 0 0 nucleolus 0.50023164392477 0.500231642699226 0 0 hm5C_site_58749 DeepMRMD:0;iRNA_m5C:0 58750 chr16 30768724 30768724 1 + C G rs184619676 30768723 + 30768703 30768743 41 GTCTGGCTTGGGCAGGAAAGCCCAGAAGGTGCTCAGCAGGG GTCTGGCTTGGGCAGGAAAGCGCAGAAGGTGCTCAGCAGGG < 41bp 0.472823810016246 0.76573704095691 0.6157398 0.6841649 prediction 0.53147408191382 Functional Gain - PHKG2 ENSG00000156873 UTR3 Human protein_coding chr16:30768723 chr16:30768724 . . 0 22 hm5C_associated_SNPs_105605 0 0 0 0 0 Ribosome 0.500231643921093 0.500231643928137 0.1368502 1.40885081378883e-11 hm5C_site_58750 DeepMRMD:0.1368502;iRNA_m5C:1.40885081378883e-11 58751 chr14 64909059 64909059 1 + C G PRAD 64909058 + 64909038 64909078 41 GCCGGTATTCCGGCCTCTGCCCCCACGTGGTGGTGCTTGTT GCCGGTATTCCGGCCTCTGCCGCCACGTGGTGGTGCTTGTT < 41bp 0.457371511176488 0.765730825783734 0.21671358 0.84266925 prediction 0.531461651567467 Functional Gain - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64909058 chr14:64909059 nonsynonymous SNV 0.895 4 22 hm5C_associated_SNPs_105606 0 0 1 0 2 Nucleus 0.500231654394549 0.500231643934953 0.6853385 0 hm5C_site_58751 DeepMRMD:0.6853385;iRNA_m5C:0 58752 chr1 150131575 150131575 1 + T C LUAD 150131573 + 150131553 150131593 41 GGAACGGCTGCTGGGAGAGGCATCATCGAATTGGAGCCAGG GGAACGGCTGCTGGGAGAGGCACCATCGAATTGGAGCCAGG < 41bp 0.501094499839627 0.766806705631077 0.22925422 0.17106038 prediction 0.531424411582899 Functional Gain - PLEKHO1 ENSG00000023902 CDS Human protein_coding chr1:150131573 chr1:150131575 nonsynonymous SNV 0.321 0 23 hm5C_associated_SNPs_105607 0 0 1 0 0 Ribosome 0.500231643923204 0.500231643926821 0 7.23510140687722e-12 hm5C_site_58752 DeepMRMD:0;iRNA_m5C:7.23510140687722e-12 58753 chr19 47876076 47876076 1 + C G SKCM 47876072 + 47876052 47876092 41 CTTAGCGTCCAGTCGCCCTTCACCCGCAGCGCCCAGAGCAG CTTAGCGTCCAGTCGCCCTTCACCGGCAGCGCCCAGAGCAG < 41bp 0.484923532696021 0.76571089229861 0.109797746 0.17983967 prediction 0.53142178459722 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47876072 chr19:47876076 nonsynonymous SNV 0.970 4 25 hm5C_associated_SNPs_105608 0 0 0 0 1 Ribosome 0.500231643920793 0.500231639372767 0 0 hm5C_site_58753 DeepMRMD:0;iRNA_m5C:0 58754 chr11 71707755 71707755 1 + C G rs565286944 71707751 + 71707731 71707771 41 TCCCAGGTAGCTGAAGGCCTCAGCCCACCCACTCCCTTCTT TCCCAGGTAGCTGAAGGCCTCAGCGCACCCACTCCCTTCTT < 41bp 0.552711600934181 0.818422486268922 0.22227615 0.48088622 prediction 0.531421770669481 Functional Gain - RNF121 ENSG00000137522 UTR3 Human protein_coding chr11:71707751 chr11:71707755 . . 0 25 hm5C_associated_SNPs_105609 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921074 0 0 hm5C_site_58754 DeepMRMD:0;iRNA_m5C:0 58755 chr15 25492409 25492409 1 + C A rs567785202 25492405 + 25492385 25492425 41 CGCTGAAGCTCGGGCCCTTCCTCGCGCCCTGGTCTCCTGCA CGCTGAAGCTCGGGCCCTTCCTCGAGCCCTGGTCTCCTGCA < 41bp 0.621548823292567 0.887250899056602 0.16231143 0.85053194 prediction 0.531404151528071 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25492405 chr15:25492409 . . 0 25 hm5C_associated_SNPs_105610 0 0 0 0 1 unknown 0.500231643920943 0.500231643919419 0.70106388 0 hm5C_site_58755 DeepMRMD:0.70106388;iRNA_m5C:0 58756 chr19 49379025 49379025 1 + T G LUAD 49379023 + 49379003 49379043 41 CAGGAGGAGCTGAGCCCCTGCCTCACCCCTGCTGCCCGGGC CAGGAGGAGCTGAGCCCCTGCCGCACCCCTGCTGCCCGGGC < 41bp 0.435288035490305 0.765685174137881 0.098332286 0.13418695 prediction 0.531370348275762 Functional Gain - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49379023 chr19:49379025 nonsynonymous SNV 0.981 3 23 hm5C_associated_SNPs_105611 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_58756 DeepMRMD:0;iRNA_m5C:0 58757 chr15 56704567 56704567 1 + T G rs138888960 56704565 + 56704545 56704585 41 CAAAGTGCCACAGAGGTTCGCTTGAATAGAGCTCTAGAAGA CAAAGTGCCACAGAGGTTCGCTGGAATAGAGCTCTAGAAGA < 41bp 0.447058111430754 0.765684383773953 0.02050078 0.11611235 prediction 0.531368767547907 Functional Gain - TEX9 ENSG00000151575 CDS Human protein_coding chr15:56704565 chr15:56704567 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_105612 0 0 1 0 2 Nucleus 0.500232012333449 0.500231843807164 0 0 hm5C_site_58757 DeepMRMD:0;iRNA_m5C:0 58758 chr17 71166084 71166084 1 + T C UCEC 71166082 + 71166062 71166102 41 GGGGCTTGGTACACAGGGTTCATCATCTACACTTTCATTCT GGGGCTTGGTACACAGGGTTCACCATCTACACTTTCATTCT < 41bp 0.499134876080229 0.765683617445042 0.2565658 0.28181767 prediction 0.531367234890085 Functional Gain - SSTR2 ENSG00000180616 CDS Human protein_coding chr17:71166082 chr17:71166084 nonsynonymous SNV 0.952 1 23 hm5C_associated_SNPs_105613 0 0 0 0 0 nucleolus 0.500231643929322 0.500231644676265 0 1.49388545978013e-09 hm5C_site_58758 DeepMRMD:0;iRNA_m5C:1.49388545978013e-09 58759 chr2 220379755 220379755 1 + C G rs146925695 220379754 + 220379734 220379774 41 TCACCTGGTGGCAATGGACCCCGCTGCCCCAGCCCCAGTGG TCACCTGGTGGCAATGGACCCGGCTGCCCCAGCCCCAGTGG < 41bp 0.456768106102946 0.765677020775355 0.18171507 0.67180216 prediction 0.531354041550709 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220379754 chr2:220379755 synonymous SNV . 0 22 hm5C_associated_SNPs_105614 0 0 0 0 0 chromatin 0.500231643739077 0.500231634858476 0.34360432 0 hm5C_site_58759 DeepMRMD:0.34360432;iRNA_m5C:0 58760 chr6 27293219 27293219 1 + T G THCA 27293217 + 27293197 27293237 41 GGTTTCCTCTTCTTGTTCCTCATGATTTGGACTAGTTTCTA GGTTTCCTCTTCTTGTTCCTCAGGATTTGGACTAGTTTCTA < 41bp 0.543123201588867 0.808770854899543 0.065908134 0.5042193 prediction 0.531295306621351 Functional Gain - VN1R10P ENSG00000220758 ncRNA_exonic Human unprocessed_pseudogene chr6:27293217 chr6:27293219 . . 0 23 hm5C_associated_SNPs_105615 0 0 0 2 0 unknown 0.500231644508543 0.500231643921084 0.00843860000000007 0 hm5C_site_58760 DeepMRMD:0.00843860000000007;iRNA_m5C:0 58761 chr7 91972444 91972444 1 + C G UCEC 91972443 + 91972423 91972463 41 ACCACCAAGTGGGTATAATGCCTGGGACACGCTCCCATCTC ACCACCAAGTGGGTATAATGCGTGGGACACGCTCCCATCTC < 41bp 0.571891352065119 0.837538870218177 0.13072297 0.65251595 prediction 0.531295036306117 Functional Gain - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:91972443 chr7:91972444 synonymous SNV . 0 22 hm5C_associated_SNPs_105616 0 0 0 0 0 Cytosol 0.500231643921093 0.5002316436614 0.3050319 0 hm5C_site_58761 DeepMRMD:0.3050319;iRNA_m5C:0 58762 chr2 26801746 26801746 1 + C G rs61224296 26801745 + 26801725 26801765 41 AGTGACAGGCCTGGGGCAAGCCCCTCCCTCCCGGAATCCCC AGTGACAGGCCTGGGGCAAGCGCCTCCCTCCCGGAATCCCC < 41bp 0.529343632741353 0.794988039990422 0.102470994 0.10999575 prediction 0.531288814498139 Functional Gain - C2orf70 ENSG00000173557 intronic Human protein_coding chr2:26801745 chr2:26801746 . . 0 22 hm5C_associated_SNPs_105617 0 0 0 0 0 exosome 0.500231643920265 0.500231643922057 0 3.58357787888508e-12 hm5C_site_58762 DeepMRMD:0;iRNA_m5C:3.58357787888508e-12 58763 chr18 74962804 74962804 1 + C G LUSC 74962803 + 74962783 74962823 41 CACCGTGTACGCGCTGCCCACCTGGGTGCTGGGCGCCTTCA CACCGTGTACGCGCTGCCCACGTGGGTGCTGGGCGCCTTCA < 41bp 0.580892305089037 0.846524849557321 0.028606206 0.4367963 prediction 0.531265088936568 Functional Gain - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74962803 chr18:74962804 synonymous SNV . 0 22 hm5C_associated_SNPs_105618 0 0 0 0 0 exosome 0.50023163984358 0.500231395765167 0 0 hm5C_site_58763 DeepMRMD:0;iRNA_m5C:0 58764 chr12 133198711 133198711 1 + C A rs115653654 133198707 + 133198687 133198727 41 CCCTGTGCAAGGGCTGGGGGCACGCTCTGGCCCCAGGCTTG CCCTGTGCAAGGGCTGGGGGCACGATCTGGCCCCAGGCTTG < 41bp 0.59396498895609 0.859595963808731 0.20759353 0.31485087 prediction 0.531261949705283 Functional Gain - P2RX2 ENSG00000187848 UTR3 Human protein_coding chr12:133198707 chr12:133198711 . . 0 25 hm5C_associated_SNPs_105619 0 0 0 0 0 exosome 0.500231643868208 0.50023163696119 0 0 hm5C_site_58764 DeepMRMD:0;iRNA_m5C:0 58765 chr1 154241327 154241327 1 + C A UCEC 154241323 + 154241303 154241343 41 GAAGTGGGGGCCCCATCAATCCGGCCACAGCTGCTGCCTAC GAAGTGGGGGCCCCATCAATCCGGACACAGCTGCTGCCTAC < 41bp 0.642625002535597 0.908251550789409 0.9133182 0.89332396 prediction 0.531253096507624 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154241323 chr1:154241327 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105620 0 0 1 0 2 Nucleus 0.500231643921274 0.500231643921136 0 0 hm5C_site_58765 DeepMRMD:0;iRNA_m5C:0 58766 chr1 154296764 154296764 1 + T A LUSC 154296760 + 154296740 154296780 41 ACTGTCCTTCTTTTGCAGTGCTGGTAATGGCTGGTGGTGGG ACTGTCCTTCTTTTGCAGTGCTGGAAATGGCTGGTGGTGGG < 41bp 0.56850208549524 0.834127366323503 0.15103012 0.16852391 prediction 0.531250561656528 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296760 chr1:154296764 synonymous SNV . 0 25 hm5C_associated_SNPs_105621 0 0 1 0 1 Ribosome 0.500232904248915 0.500235066617621 0 4.32473741240891e-06 hm5C_site_58766 DeepMRMD:0;iRNA_m5C:4.32473741240891e-06 58767 chr9 136319591 136319591 1 + T A LIHC 136319587 + 136319567 136319607 41 GGCCAGCTGTGGCCTTGGCACTGCTAGACGCTCGGTGGCCT GGCCAGCTGTGGCCTTGGCACTGCAAGACGCTCGGTGGCCT < 41bp 0.573406031530795 0.839030673031585 0.2016764 0.276411 prediction 0.531249283001581 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136319587 chr9:136319591 synonymous SNV . 0 25 hm5C_associated_SNPs_105622 0 0 0 0 1 nucleus 0.500231643921092 0.500231643921044 0 0 hm5C_site_58767 DeepMRMD:0;iRNA_m5C:0 58768 chr8 56015435 56015435 1 + C A BLCA 56015431 + 56015411 56015451 41 GTACTTCGCGGACGTGGGCACAGACGTCTGGCTCGCCGTGG GTACTTCGCGGACGTGGGCACAGAAGTCTGGCTCGCCGTGG < 41bp 0.614633678265916 0.880256585040028 0.7669071 0.77444386 prediction 0.531245813548225 Functional Gain - XKR4 ENSG00000206579 CDS Human protein_coding chr8:56015431 chr8:56015435 nonsynonymous SNV 0.264 2 25 hm5C_associated_SNPs_105623 0 0 0 0 0 exosome 0.500236519602178 0.500231643908896 0.0150735200000001 0 hm5C_site_58768 DeepMRMD:0.0150735200000001;iRNA_m5C:0 58769 chr1 223178774 223178774 1 + C A BLCA 223178770 + 223178750 223178790 41 CCTGCAGGGCAGAGTAAAGCCAGCCGGAATGCAGAATTCTC CCTGCAGGGCAGAGTAAAGCCAGCAGGAATGCAGAATTCTC < 41bp 0.372579366363443 0.765620483071134 0.3839358 0.449349 prediction 0.531240966142269 Functional Gain - DISP1 ENSG00000154309 CDS Human protein_coding chr1:223178770 chr1:223178774 synonymous SNV . 0 25 hm5C_associated_SNPs_105624 0 0 0 0 0 Cytosol 0.500231643920951 0.500231643920176 0 0 hm5C_site_58769 DeepMRMD:0;iRNA_m5C:0 58770 chr4 4766042 4766042 1 + C G rs557293594 4766041 + 4766021 4766061 41 TCTCCGGGATGTGAGCTGTACCCAGGCCTAACTTACGTCCG TCTCCGGGATGTGAGCTGTACGCAGGCCTAACTTACGTCCG < 41bp 0.474525873897908 0.765615571709025 0.081226826 0.03637728 prediction 0.531231143418051 Functional Gain - LOC101928279 ENSG00000247708;ENSG00000273396 intergenic Human other chr4:4766041 chr4:4766042 . . 0 22 hm5C_associated_SNPs_105625 0 0 0 0 1 unknown 0.500231643401754 0.500231643921092 0 1.03867670020463e-09 hm5C_site_58770 DeepMRMD:0;iRNA_m5C:1.03867670020463e-09 58771 chr16 56485554 56485554 1 + C G rs11076155 56485550 + 56485530 56485570 41 TGGGAAGCGGCCAGCGGAGCCCGGCCCAGCCCGGGTGGGAA TGGGAAGCGGCCAGCGGAGCCCGGGCCAGCCCGGGTGGGAA < 41bp 0.532836186705461 0.798439983261128 0.36133948 0.7783195 prediction 0.531207593111334 Functional Gain - OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56485550 chr16:56485554 synonymous SNV . 0 25 hm5C_associated_SNPs_105626 0 0 1 0 0 Ribosome 0.500231649490509 0.500231643921092 0.556639 0 hm5C_site_58771 DeepMRMD:0.556639;iRNA_m5C:0 58772 chr11 59245659 59245659 1 + C A LUAD 59245655 + 59245635 59245675 41 ACTGTGGTGACCCTGCATTTCGTGCCCTGCATCTATGTCTA ACTGTGGTGACCCTGCATTTCGTGACCTGCATCTATGTCTA < 41bp 0.635598608312312 0.901201640689782 0.054953367 0.19375762 prediction 0.53120606475494 Functional Gain - OR4D10 ENSG00000254466 CDS Human protein_coding chr11:59245655 chr11:59245659 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_105627 0 0 0 0 0 unknown 0.500232029861121 0.500231643949398 0 0 hm5C_site_58772 DeepMRMD:0;iRNA_m5C:0 58773 chr11 123886954 123886954 1 + C A LUSC 123886950 + 123886930 123886970 41 TATGTGTCCATCGTCTGTTCCATCCTGCGGATCCGCACCTC TATGTGTCCATCGTCTGTTCCATCATGCGGATCCGCACCTC < 41bp 0.373603347932297 0.765596989769223 0.08995226 0.19406474 prediction 0.531193979538445 Functional Gain - OR10G4 ENSG00000254737 CDS Human protein_coding chr11:123886950 chr11:123886954 nonsynonymous SNV 0.975 2 25 hm5C_associated_SNPs_105628 0 0 0 0 0 unknown 0.500231756286555 0.500231751096122 0 0 hm5C_site_58773 DeepMRMD:0;iRNA_m5C:0 58774 chr1 151512898 151512898 1 + C A OV 151512894 + 151512874 151512914 41 TGGACGTGCACCCAGAGGACCAGGCGGCGGTAAGAAAAAGC TGGACGTGCACCCAGAGGACCAGGAGGCGGTAAGAAAAAGC < 41bp 0.469032556030501 0.765596476252481 0.7468848 0.8804102 prediction 0.531192952504963 Functional Gain - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151512894 chr1:151512898 nonsynonymous SNV 0.156 0 25 hm5C_associated_SNPs_105629 0 0 0 0 1 Ribosome 0.500231646096442 0.500231647575732 0.2670508 2.9585800476184e-09 hm5C_site_58774 DeepMRMD:0.2670508;iRNA_m5C:2.9585800476184e-09 58775 chr14 95030054 95030054 1 + C A LUAD 95030050 + 95030030 95030070 41 CCGGGGAAGAACATCTTTTTCTCCCCGCTGAGCATCTCGGC CCGGGGAAGAACATCTTTTTCTCCACGCTGAGCATCTCGGC < 41bp 0.665028576090556 0.930622107971848 0.08567363 0.8294492 prediction 0.531187063762586 Functional Gain - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95030050 chr14:95030054 nonsynonymous SNV 0.796 5 25 hm5C_associated_SNPs_105630 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.6588984 0 hm5C_site_58775 DeepMRMD:0.6588984;iRNA_m5C:0 58776 chrX 110366398 110366398 1 + C G UCEC 110366397 + 110366377 110366417 41 CTGAGGATGAATAGTAACAACCGGGATTCTTCAGCACTCAA CTGAGGATGAATAGTAACAACGGGGATTCTTCAGCACTCAA < 41bp 0.566242366959151 0.831831190573949 0.11191651 0.31353405 prediction 0.531177647229595 Functional Gain - PAK3 ENSG00000077264 CDS Human protein_coding chrX:110366397 chrX:110366398 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_105631 0 0 0 0 0 exosome 0.500231643921093 0.500231643921093 0 0 hm5C_site_58776 DeepMRMD:0;iRNA_m5C:0 58777 chr9 140777310 140777310 1 + A C LUSC 140777312 - 140777292 140777332 41 GTGAGGACGACCACGAAGTCCATGACGTTCCAGCCGTTCCG GTGAGGACGACCACGAAGTCCAGGACGTTCCAGCCGTTCCG < 41bp 0.610127891678204 0.875713304781475 0.06185171 0.36798695 prediction 0.531170826206543 Functional Gain - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140777312 chr9:140777310 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_105632 0 0 0 0 1 exosome 0.500140365968668 0.500231643920912 0 0.000182555904487902 hm5C_site_58777 DeepMRMD:0;iRNA_m5C:0.000182555904487902 58778 chr12 3129865 3129865 1 + C G HNSC 3129864 + 3129844 3129884 41 CCGGCACCCCCATGGCAGGGCCGCAGCGTGGCCAGCTCCAA CCGGCACCCCCATGGCAGGGCGGCAGCGTGGCCAGCTCCAA < 41bp 0.579311973622567 0.844892232297963 0.25589263 0.48071894 prediction 0.531160517350792 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3129864 chr12:3129865 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_105633 0 0 1 0 1 Cytosol 0.500231643921095 0.500231643921108 0 2.53130849614536e-14 hm5C_site_58778 DeepMRMD:0;iRNA_m5C:2.53130849614536e-14 58779 chr19 36912328 36912328 1 + C G rs192786610 36912324 + 36912304 36912344 41 TTTCTGGGACTGCTCAGCCACCGGCCGCTCCCGGCACCAGG TTTCTGGGACTGCTCAGCCACCGGGCGCTCCCGGCACCAGG < 41bp 0.491020089991984 0.765540029345027 0.16390416 0.8261436 prediction 0.531080058690054 Functional Gain - LOC644189 ENSG00000267142 upstream Human processed_pseudogene chr19:36912324 chr19:36912328 . . 0 25 hm5C_associated_SNPs_105634 0 0 0 0 0 unknown 0.500226390555081 0.50023164385464 0.6522872 1.0506599117388e-05 hm5C_site_58779 DeepMRMD:0.6522872;iRNA_m5C:1.0506599117388e-05 58780 chr8 121061961 121061961 1 + C A rs117391704 121061957 + 121061937 121061977 41 GTGCTGAGCTCCTGGGCCTCCCAGCCCTCCAGTGGCCTGTG GTGCTGAGCTCCTGGGCCTCCCAGACCTCCAGTGGCCTGTG < 41bp 0.375313918001303 0.765524224937733 0.035894245 0.103019565 prediction 0.531048449875465 Functional Gain - DEPTOR ENSG00000155792 UTR3 Human protein_coding chr8:121061957 chr8:121061961 . . 0 25 hm5C_associated_SNPs_105635 0 0 0 0 0 exosome 0.500231643921093 0.500231898450605 0 5.0905902360121e-07 hm5C_site_58780 DeepMRMD:0;iRNA_m5C:5.0905902360121e-07 58781 chr6 137243771 137243771 1 + C G SKCM 137243770 + 137243750 137243790 41 CTCGGGCTCATCGCCGTGCCCCCCTTCGGTCTGAGCCTGGC CTCGGGCTCATCGCCGTGCCCGCCTTCGGTCTGAGCCTGGC < 41bp 0.571474916590821 0.836992528033518 0.013380408 0.117082685 prediction 0.531035222885393 Functional Gain - SLC35D3 ENSG00000182747 CDS Human protein_coding chr6:137243770 chr6:137243771 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_105636 0 0 0 0 0 exosome 0.500231643921092 0.500231643921091 0 0 hm5C_site_58781 DeepMRMD:0;iRNA_m5C:0 58782 chr2 27280180 27280180 1 + T C STAD 27280178 + 27280158 27280198 41 CTTTATGTCTTAGCTACACACTTGAATGCAACTACAACACT CTTTATGTCTTAGCTACACACTCGAATGCAACTACAACACT < 41bp 0.53150958210045 0.797026448148935 0.10574561 0.46990594 prediction 0.531033732096971 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280178 chr2:27280180 synonymous SNV . 0 23 hm5C_associated_SNPs_105637 0 0 1 3 1 Cytosol 0.500231644530433 0.500231663413199 0 3.77655327010729e-08 hm5C_site_58782 DeepMRMD:0;iRNA_m5C:3.77655327010729e-08 58783 chr17 16593979 16593979 1 + C G rs185265343 16593978 + 16593958 16593998 41 GGCGAGCTCCACAGAGCTGCCCGGTCGGGCGACGTCCCTGG GGCGAGCTCCACAGAGCTGCCGGGTCGGGCGACGTCCCTGG < 41bp 0.566642298561339 0.832154592046971 0.27233112 0.81413436 prediction 0.531024586971265 Functional Gain - CCDC144A ENSG00000170160;ENSG00000266302 CDS Human other chr17:16593978 chr17:16593979 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_105638 0 0 0 0 1 exosome 0.50023159483812 0.500231644083077 0.62826872 9.84899142242313e-08 hm5C_site_58783 DeepMRMD:0.62826872;iRNA_m5C:9.84899142242313e-08 58784 chr2 46808710 46808710 1 + C A rs186205049 46808706 + 46808686 46808726 41 CACGTAGCCAAAGGTCGCTCCAAGCGTACAGGAGATGGGCC CACGTAGCCAAAGGTCGCTCCAAGAGTACAGGAGATGGGCC < 41bp 0.371957452036534 0.765512277252859 0.8930359 0.9023516 prediction 0.531024554505718 Functional Gain - PIGF ENSG00000151665 CDS Human protein_coding chr2:46808706 chr2:46808710 synonymous SNV . 0 25 hm5C_associated_SNPs_105639 0 0 0 1 0 Ribosome 0.500231613967907 0.500232116791121 0.0186314000000001 1.00564642724343e-06 hm5C_site_58784 DeepMRMD:0.0186314000000001;iRNA_m5C:1.00564642724343e-06 58785 chr20 31021672 31021672 1 + C G BLCA 31021671 + 31021651 31021691 41 CACAATTGAAAGTGTTCACACCGAAAAGCCACAGCCCACTA CACAATTGAAAGTGTTCACACGGAAAAGCCACAGCCCACTA < 41bp 0.456735100234204 0.765504411389283 0.08732656 0.45229912 prediction 0.531008822778565 Functional Gain - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31021671 chr20:31021672 synonymous SNV . 0 22 hm5C_associated_SNPs_105640 0 0 1 0 1 Nucleus 0.500231644848648 0.500231643921092 0 0 hm5C_site_58785 DeepMRMD:0;iRNA_m5C:0 58786 chr3 37555294 37555294 1 + T C UCEC 37555292 + 37555272 37555312 41 TCCTCCTTGTGCGCAGTTGACCTGAATGGGGACGGCCTCTC TCCTCCTTGTGCGCAGTTGACCCGAATGGGGACGGCCTCTC < 41bp 0.485184571898512 0.765500071974993 0.18881324 0.18351534 prediction 0.531000143949987 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37555292 chr3:37555294 nonsynonymous SNV 0.959 4 23 hm5C_associated_SNPs_105641 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921111 0 3.68594044175552e-14 hm5C_site_58786 DeepMRMD:0;iRNA_m5C:3.68594044175552e-14 58787 chr9 103115383 103115383 1 + C G rs371403404 103115382 + 103115362 103115402 41 AGGGAGGACAGCGCGAGGTCCCCGGACAAAGCGTGGCGCAT AGGGAGGACAGCGCGAGGTCCGCGGACAAAGCGTGGCGCAT < 41bp 0.548345510395009 0.8138414045628 0.8120166 0.8814508 prediction 0.530991788335583 Functional Gain - TEX10 ENSG00000136891 upstream Human protein_coding chr9:103115382 chr9:103115383 . . 0 22 hm5C_associated_SNPs_105642 0 0 0 0 0 Nucleus 0.500231643925679 0.500231644137205 0.1388684 4.2305203784565e-10 hm5C_site_58787 DeepMRMD:0.1388684;iRNA_m5C:4.2305203784565e-10 58788 chr10 105201628 105201628 1 + T C UCEC 105201626 + 105201606 105201646 41 AGCGCCCCGGCTGCAGCTGTCTTCAGGCTTCGCTTGGAATG AGCGCCCCGGCTGCAGCTGTCTCCAGGCTTCGCTTGGAATG < 41bp 0.470700602518415 0.765495332037589 0.12622273 0.9128132 prediction 0.530990664075178 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105201626 chr10:105201628 nonsynonymous SNV 0.015 1 23 hm5C_associated_SNPs_105643 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921093 0.8256264 2.22044604925031e-16 hm5C_site_58788 DeepMRMD:0.8256264;iRNA_m5C:2.22044604925031e-16 58789 chr7 123302963 123302963 1 + T A TGCT 123302959 + 123302939 123302979 41 TTCTTCCCAAAGGCTGCCACCACCTCCTCCTCCTCCCCCTC TTCTTCCCAAAGGCTGCCACCACCACCTCCTCCTCCCCCTC < 41bp 0.426011744906191 0.76549492720824 0.2085754 0.19300643 prediction 0.530989854416479 Functional Gain - LMOD2 ENSG00000170807 CDS Human protein_coding chr7:123302959 chr7:123302963 synonymous SNV . 0 25 hm5C_associated_SNPs_105644 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58789 DeepMRMD:0;iRNA_m5C:0 58790 chr1 148932802 148932802 1 + C G UCEC 148932801 + 148932781 148932821 41 TGCAGACTGCTGGCCAGACCCCCAAGCTAGCCCGCCAGGCC TGCAGACTGCTGGCCAGACCCGCAAGCTAGCCCGCCAGGCC < 41bp 0.571155682541577 0.836649114355579 0.37574393 0.4333483 prediction 0.530986863628002 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932801 chr1:148932802 . . 0 22 hm5C_associated_SNPs_105645 0 0 0 0 1 unknown 0.500231644205215 0.500231643922082 0 0 hm5C_site_58790 DeepMRMD:0;iRNA_m5C:0 58791 chr7 143807112 143807112 1 + C A rs61735905 143807108 + 143807088 143807128 41 GAGTGTGCACGATCCTGGTTCTCACGTCCTGGTCATGTGGG GAGTGTGCACGATCCTGGTTCTCAAGTCCTGGTCATGTGGG < 41bp 0.371100542836487 0.76549185405262 0.06901854 0.1290392 prediction 0.53098370810524 Functional Gain - OR2A2 ENSG00000221989 CDS Human protein_coding chr7:143807108 chr7:143807112 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105646 0 0 0 0 0 unknown 0.500231591681003 0.500231642049868 0 1.00737729491485e-07 hm5C_site_58791 DeepMRMD:0;iRNA_m5C:1.00737729491485e-07 58792 chr4 79697870 79697870 1 + C A rs149914551 79697866 + 79697846 79697886 41 AGGTCACCCTGGAAGAGTCGCTGGCCGAAGGTACGGGCGCC AGGTCACCCTGGAAGAGTCGCTGGACGAAGGTACGGGCGCC < 41bp 0.635633250412544 0.901122897223695 0.17804691 0.5385068 prediction 0.530979293622302 Functional Gain - BMP2K ENSG00000138756 CDS Human protein_coding chr4:79697866 chr4:79697870 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_105647 0 1 1 0 1 Cytosol 0.500231643921092 0.500231644664781 0.0770135999999999 1.48737622218675e-09 hm5C_site_58792 DeepMRMD:0.0770135999999999;iRNA_m5C:1.48737622218675e-09 58793 chr4 37445315 37445315 1 + C A rs4634233 37445311 + 37445291 37445331 41 CATGAAGAAGACAACTACATCGAGCTGATTCCCCGAGACAG CATGAAGAAGACAACTACATCGAGATGATTCCCCGAGACAG < 41bp 0.385800751237931 0.765483434640936 0.8768978 0.9150856 prediction 0.530966869281871 Functional Gain - NWD2 ENSG00000174145 CDS Human protein_coding chr4:37445311 chr4:37445315 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_105648 0 0 0 0 0 exosome 0.500231643921234 0.500231643941987 0.0763756000000002 4.15056877756115e-11 hm5C_site_58793 DeepMRMD:0.0763756000000002;iRNA_m5C:4.15056877756115e-11 58794 chr1 227920679 227920679 1 + G T TGCT 227920683 - 227920663 227920703 41 ACTGGGTCAATGGCTTCAACCTGGCCAACATGTGGCGCTTC ACTGGGTCAATGGCTTCAACCTGGACAACATGTGGCGCTTC < 41bp 0.650082730705447 0.915562324194449 0.29871798 0.20832524 prediction 0.530959186978004 Functional Gain - JMJD4 ENSG00000081692 CDS Human protein_coding chr1:227920683 chr1:227920679 nonsynonymous SNV 0.957 0 25 hm5C_associated_SNPs_105649 0 0 0 0 3 Ribosome 0.500231643528892 0.50023077453481 0 0 hm5C_site_58794 DeepMRMD:0;iRNA_m5C:0 58795 chr8 102661654 102661654 1 + T G COAD 102661652 + 102661632 102661672 41 TCTCTTCCAGTGCTCTTGTACGTGAGGAAGGAGACTGACGA TCTCTTCCAGTGCTCTTGTACGGGAGGAAGGAGACTGACGA < 41bp 0.60818669368346 0.873665456800415 0.34027368 0.8520424 prediction 0.530957526233911 Functional Gain - GRHL2 ENSG00000083307 CDS Human protein_coding chr8:102661652 chr8:102661654 nonsynonymous SNV 0.986 4 23 hm5C_associated_SNPs_105650 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921092 0.7040848 0 hm5C_site_58795 DeepMRMD:0.7040848;iRNA_m5C:0 58796 chr16 30199160 30199160 1 + T A rs529237177 30199156 + 30199136 30199176 41 TACCTCTGTGGCAAGGTGGCCTCGTCGGGCGGGGTGGGGGT TACCTCTGTGGCAAGGTGGCCTCGACGGGCGGGGTGGGGGT < 41bp 0.462231255865649 0.765470102728235 0.38049713 0.8146547 prediction 0.53094020545647 Functional Gain - CORO1A ENSG00000102879 intronic Human protein_coding chr16:30199156 chr16:30199160 . . 0 25 hm5C_associated_SNPs_105651 0 0 0 0 0 Cytosol 0.500231643921128 0.500231643921092 0.6293094 0 hm5C_site_58796 DeepMRMD:0.6293094;iRNA_m5C:0 58797 chr11 93819316 93819316 1 + C G SARC 93819315 + 93819295 93819335 41 GACTCCCTGGCCCTGTTTCCCCACATGGCCACAACAGCATT GACTCCCTGGCCCTGTTTCCCGACATGGCCACAACAGCATT < 41bp 0.463700442651172 0.765467152959565 0.24739432 0.23877156 prediction 0.530934305919129 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93819315 chr11:93819316 nonsynonymous SNV 0.523 5 22 hm5C_associated_SNPs_105652 0 0 0 0 1 exosome 0.50023164392127 0.500231643921117 0 0 hm5C_site_58797 DeepMRMD:0;iRNA_m5C:0 58798 chr12 2800309 2800309 1 + G T TGCT 2800313 - 2800293 2800333 41 GGAGCTCCTCCTCACTCGGTCGACCCCGCGCGCGCACACAG GGAGCTCCTCCTCACTCGGTCGACACCGCGCGCGCACACAG < 41bp 0.383816367885207 0.765455952424767 0.045853496 0.028509349 prediction 0.530911904849533 Functional Gain - CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2800313 chr12:2800309 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_105653 0 0 0 0 0 Cytosol 0.500231645708606 0.50023164278875 0 0 hm5C_site_58798 DeepMRMD:0;iRNA_m5C:0 58799 chr8 70517133 70517133 1 + C A UCEC 70517129 + 70517109 70517149 41 GGGTCAAAGAACTATGCCAGCAGGCCAGGTACCAGACAGCC GGGTCAAAGAACTATGCCAGCAGGACAGGTACCAGACAGCC < 41bp 0.362722378534694 0.765444710590569 0.3146993 0.39325476 prediction 0.530889421181139 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70517129 chr8:70517133 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_105654 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_58799 DeepMRMD:0;iRNA_m5C:0 58800 chr13 88329518 88329518 1 + C A UCEC 88329514 + 88329494 88329534 41 TGTAGTAGTTTCCACGCCCACACCCTCCTCTATCCAGGTCC TGTAGTAGTTTCCACGCCCACACCATCCTCTATCCAGGTCC < 41bp 0.343977455218204 0.765433923822983 0.016239345 0.026329726 prediction 0.530867847645966 Functional Gain - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88329514 chr13:88329518 synonymous SNV . 0 25 hm5C_associated_SNPs_105655 0 0 1 0 0 nucleus 0.500231643578255 0.500231643761665 0 3.66821018005226e-10 hm5C_site_58800 DeepMRMD:0;iRNA_m5C:3.66821018005226e-10 58801 chr1 153177281 153177281 1 + C A LUSC 153177277 + 153177257 153177297 41 AAAAGTGTGAGTCCAAATGCCAGCCCAGCTGTTTAAAGAAG AAAAGTGTGAGTCCAAATGCCAGCACAGCTGTTTAAAGAAG < 41bp 0.353753506390484 0.765425597594928 0.082154095 0.06861487 prediction 0.530851195189857 Functional Gain - LELP1 ENSG00000203784 CDS Human protein_coding chr1:153177277 chr1:153177281 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105656 0 0 0 0 0 unknown 0.500231643897255 0.50023177857018 0 2.69345850956171e-07 hm5C_site_58801 DeepMRMD:0;iRNA_m5C:2.69345850956171e-07 58802 chr16 2255787 2255787 1 + C A rs574093429 2255783 + 2255763 2255803 41 AGTGGCGCCCGCGCGTGACTCCCCCCTGCCGGCTGCGGAGG AGTGGCGCCCGCGCGTGACTCCCCACTGCCGGCTGCGGAGG < 41bp 0.442978401727753 0.76541598322476 0.16496441 0.11700824 prediction 0.530831966449519 Functional Gain - MLST8 ENSG00000167965 UTR5 Human protein_coding chr16:2255783 chr16:2255787 . . 0 25 hm5C_associated_SNPs_105657 0 0 1 0 1 chromatin 0.500231643587897 0.500231647498234 0 7.82067410831644e-09 hm5C_site_58802 DeepMRMD:0;iRNA_m5C:7.82067410831644e-09 58803 chr9 42467261 42467261 1 + T G rs12349885 42467258 + 42467238 42467278 41 CCTGGTCAGTGAGGCCTTGTCAGTGAGGTCCTTGTCAGTGG CCTGGTCAGTGAGGCCTTGTCAGGGAGGTCCTTGTCAGTGG < 41bp 0.41936433492282 0.765407277629551 0.31221628 0.9155628 prediction 0.530814555259103 Functional Gain - ANKRD20A3;LOC105379252 ENSG00000223839 ncRNA_exonic Human lincRNA chr9:42467258 chr9:42467261 . . 0 24 hm5C_associated_SNPs_105658 0 0 0 0 0 unknown 0.500231643921085 0.500231643921092 0.8311256 1.4432899320127e-14 hm5C_site_58803 DeepMRMD:0.8311256;iRNA_m5C:1.4432899320127e-14 58804 chr12 285479 285479 1 + C A rs146355193 285475 + 285455 285495 41 GGGAAGGGCCCCTCCCCAGCCAGACGAGAGGCAGCCACCCC GGGAAGGGCCCCTCCCCAGCCAGAAGAGAGGCAGCCACCCC < 41bp 0.413680041596713 0.765405957600548 0.76584 0.82668525 prediction 0.530811915201097 Functional Gain - IQSEC3 ENSG00000256540 ncRNA_intronic Human lincRNA chr12:285475 chr12:285479 . . 0 25 hm5C_associated_SNPs_105659 0 0 0 0 0 nucleolus 0.500231643920415 0.500231643919728 0.1216905 0 hm5C_site_58804 DeepMRMD:0.1216905;iRNA_m5C:0 58805 chrX 70444034 70444034 1 + C A UCEC 70444030 + 70444010 70444050 41 TGTCTTTTATCTGCTCTACCCTGGCTATGCCATGGTGCGGC TGTCTTTTATCTGCTCTACCCTGGATATGCCATGGTGCGGC < 41bp 0.654218738932326 0.919621463605077 0.43277755 0.48346725 prediction 0.530805449345501 Functional Gain - GJB1 ENSG00000169562 CDS Human protein_coding chrX:70444030 chrX:70444034 synonymous SNV . 0 25 hm5C_associated_SNPs_105660 0 0 1 0 0 Endoplasmic reticulum 0.50023164392093 0.500231643921396 0 9.30366894635881e-13 hm5C_site_58805 DeepMRMD:0;iRNA_m5C:9.30366894635881e-13 58806 chr1 33359734 33359734 1 + C A rs539582932 33359730 + 33359710 33359750 41 CAGGCCCCCTTACCCACCCACCAGCCCCAAGGCCCGACCCC CAGGCCCCCTTACCCACCCACCAGACCCAAGGCCCGACCCC < 41bp 0.398291176087259 0.765391082280996 0.10015336 0.12341556 prediction 0.530782164561991 Functional Gain - HPCA ENSG00000121905 UTR3 Human protein_coding chr1:33359730 chr1:33359734 . . 0 25 hm5C_associated_SNPs_105661 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_58806 DeepMRMD:0;iRNA_m5C:0 58807 chr3 185689545 185689545 1 + T A rs145408963 185689541 + 185689521 185689561 41 AAGGGCGAGGTGGAGGAGTACTTCTGGTCCATTGGCATCCC AAGGGCGAGGTGGAGGAGTACTTCAGGTCCATTGGCATCCC < 41bp 0.460888377590913 0.765381426773346 0.07221985 0.38165027 prediction 0.530762853546693 Functional Gain - NMRAL2P ENSG00000171658 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:185689541 chr3:185689545 . . 0 25 hm5C_associated_SNPs_105662 0 0 0 0 0 unknown 0.500231643921091 0.500231643948942 0 5.57025536807032e-11 hm5C_site_58807 DeepMRMD:0;iRNA_m5C:5.57025536807032e-11 58808 chr11 118849777 118849777 1 + C A OV 118849773 + 118849753 118849793 41 AAGAGGGAGGACCTGACAAGCACACTCCCCTCCTCTCAGCC AAGAGGGAGGACCTGACAAGCACAATCCCCTCCTCTCAGCC < 41bp 0.349892567314374 0.765365899958437 0.15085348 0.19455951 prediction 0.530731799916875 Functional Gain - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118849773 chr11:118849777 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_105663 0 0 0 1 0 unknown 0.500231643921095 0.500231643932931 0 2.36712871526379e-11 hm5C_site_58808 DeepMRMD:0;iRNA_m5C:2.36712871526379e-11 58809 chr1 17266514 17266514 1 + C A rs141271666 17266510 + 17266490 17266530 41 GCAGCGCCTGCGGGACAAGACCGACGGCGCCATGCAGGCCC GCAGCGCCTGCGGGACAAGACCGAAGGCGCCATGCAGGCCC < 41bp 0.381067923488678 0.76536168534076 0.60462236 0.7463412 prediction 0.53072337068152 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17266510 chr1:17266514 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105664 0 0 0 0 1 chromatin 0.50023164393451 0.500231643921092 0.28343768 0 hm5C_site_58809 DeepMRMD:0.28343768;iRNA_m5C:0 58810 chr16 66426177 66426177 1 + C T SKCM 66426176 + 66426156 66426196 41 ATCACAGATGTGGACGAGCCCCCCATTTTCCAGCAGCCTTT ATCACAGATGTGGACGAGCCCTCCATTTTCCAGCAGCCTTT < 41bp 0.497575428820445 0.76535667846697 0.060181588 0.927325 prediction 0.530713356933939 Functional Gain - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66426176 chr16:66426177 nonsynonymous SNV 0.495 3 22 hm5C_associated_SNPs_105665 0 0 1 0 0 Cytosol 0.500231647139831 0.500233011344751 0.85465 2.72840983961409e-06 hm5C_site_58810 DeepMRMD:0.85465;iRNA_m5C:2.72840983961409e-06 58811 chr8 92307857 92307857 1 + C A UCEC 92307853 + 92307833 92307873 41 ACCACACAGAGTAACACAAGCGTGCTGGGCTTATCCGACTT ACCACACAGAGTAACACAAGCGTGATGGGCTTATCCGACTT < 41bp 0.356882658204781 0.765352544395517 0.18523318 0.20203024 prediction 0.530705088791034 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92307853 chr8:92307857 nonsynonymous SNV 0.430 3 25 hm5C_associated_SNPs_105666 0 0 0 0 2 membrane 0.500363244948318 0.500231679809711 0 0 hm5C_site_58811 DeepMRMD:0;iRNA_m5C:0 58812 chr11 18344181 18344181 1 + C A rs532426961 18344177 + 18344157 18344197 41 AGAGGCGGTGGCTACTGCTGCGGCCACTGGGTTTCGGCCTC AGAGGCGGTGGCTACTGCTGCGGCAACTGGGTTTCGGCCTC < 41bp 0.599307554701381 0.864651180526813 0.8421534 0.87779385 prediction 0.530687251650865 Functional Gain - GTF2H1 ENSG00000110768 UTR5 Human protein_coding chr11:18344177 chr11:18344181 . . 0 25 hm5C_associated_SNPs_105667 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921093 0.0712808999999999 6.66133814775094e-16 hm5C_site_58812 DeepMRMD:0.0712808999999999;iRNA_m5C:6.66133814775094e-16 58813 chr2 64796343 64796343 1 + C G LUSC 64796342 + 64796322 64796362 41 GTCCTCCTTGGGAATAGACACCCGAAACATTGTGAGTTTGT GTCCTCCTTGGGAATAGACACGCGAAACATTGTGAGTTTGT < 41bp 0.471809661095743 0.765339500468482 0.3355438 0.836524 prediction 0.530679000936963 Functional Gain - AFTPH ENSG00000119844 CDS Human protein_coding chr2:64796342 chr2:64796343 synonymous SNV . 0 22 hm5C_associated_SNPs_105668 0 0 1 0 1 Ribosome 0.500233183880031 0.500231643883039 0.673048 0 hm5C_site_58813 DeepMRMD:0.673048;iRNA_m5C:0 58814 chr1 1961656 1961656 1 + C A LUAD 1961652 + 1961632 1961672 41 GCAGACACCATTGACATTTACGCCCGCGCTGTGTTCCCTGC GCAGACACCATTGACATTTACGCCAGCGCTGTGTTCCCTGC < 41bp 0.650499422096629 0.915835323179822 0.15883005 0.24076873 prediction 0.530671802166385 Functional Gain - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961652 chr1:1961656 nonsynonymous SNV 0.758 5 25 hm5C_associated_SNPs_105669 0 0 0 0 0 Cytosol 0.500230771302984 0.49987354790357 0 0 hm5C_site_58814 DeepMRMD:0;iRNA_m5C:0 58815 chr10 13246284 13246284 1 + T C rs2277221 13246282 + 13246262 13246302 41 AGCAGCATGAATACCACTGGCATGATGGTGTGAAGAGGTTT AGCAGCATGAATACCACTGGCACGATGGTGTGAAGAGGTTT < 41bp 0.487356480519544 0.765334430749722 0.14411098 0.09579897 prediction 0.530668861499444 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13246282 chr10:13246284 synonymous SNV . 0 23 hm5C_associated_SNPs_105670 0 0 1 0 2 Nucleus 0.500232355407338 0.500235368045101 0 6.02527552540089e-06 hm5C_site_58815 DeepMRMD:0;iRNA_m5C:6.02527552540089e-06 58816 chr12 52387845 52387845 1 + T G LUAD 52387843 + 52387823 52387863 41 GCCCGCCTGACGGCCCTGCGCATCAAGAAGACCCTCTCCCA GCCCGCCTGACGGCCCTGCGCAGCAAGAAGACCCTCTCCCA < 41bp 0.601057070039325 0.866379599385549 0.08928156 0.2822229 prediction 0.53064505869245 Functional Gain - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52387843 chr12:52387845 nonsynonymous SNV 0.997 5 23 hm5C_associated_SNPs_105671 0 0 0 0 1 Endoplasmic reticulum 0.500231643903392 0.500231643919356 0 3.19277937421703e-11 hm5C_site_58816 DeepMRMD:0;iRNA_m5C:3.19277937421703e-11 58817 chr11 57135876 57135876 1 + T C UCEC 57135874 + 57135854 57135894 41 TTCAACATCATCCCCACCATCATCAGCTCTGTGGCGGCCTT TTCAACATCATCCCCACCATCACCAGCTCTGTGGCGGCCTT < 41bp 0.534322810893659 0.799644752225477 0.1769799 0.18239477 prediction 0.530643882663637 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57135874 chr11:57135876 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105672 0 0 0 0 2 exosome 0.500231643934633 0.500231643938956 0 8.64752713880534e-12 hm5C_site_58817 DeepMRMD:0;iRNA_m5C:8.64752713880534e-12 58818 chr5 79373964 79373964 1 + C G LUAD 79373960 + 79373940 79373980 41 TGCCCAGAGAACGCAGAGGTCACCCTGACCGACTTCAGGGC TGCCCAGAGAACGCAGAGGTCACCGTGACCGACTTCAGGGC < 41bp 0.497712277856081 0.765314663507337 0.10486746 0.27811944 prediction 0.530629327014674 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79373960 chr5:79373964 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105673 0 0 0 0 2 exosome 0.500231666894524 0.500239798764333 0 1.62637396163845e-05 hm5C_site_58818 DeepMRMD:0;iRNA_m5C:1.62637396163845e-05 58819 chr21 27012088 27012088 1 + C A rs118115569 27012084 + 27012064 27012104 41 CCCGGCCTCCTGCGCTCCTGCCGCCGGGACCCTCGACCTCC CCCGGCCTCCTGCGCTCCTGCCGCAGGGACCCTCGACCTCC < 41bp 0.514054758536464 0.77936386045244 0.37467182 0.3447243 prediction 0.530618203831952 Functional Gain - JAM2 ENSG00000154721 UTR5 Human protein_coding chr21:27012084 chr21:27012088 . . 0 25 hm5C_associated_SNPs_105674 0 0 0 0 0 nucleus 0.500231675913614 0.500231643921092 0 0 hm5C_site_58819 DeepMRMD:0;iRNA_m5C:0 58820 chr8 125463428 125463428 1 + C G rs61752958 125463424 + 125463404 125463444 41 CCCCAGGCAGTCCCTGTATGCTCACGCAGCTCCCGGATCCT CCCCAGGCAGTCCCTGTATGCTCAGGCAGCTCCCGGATCCT < 41bp 0.527695125562827 0.793001563611911 0.04371929 0.14088333 prediction 0.530612876098168 Functional Gain - TRMT12 ENSG00000183665 CDS Human protein_coding chr8:125463424 chr8:125463428 nonsynonymous SNV 0.397 1 25 hm5C_associated_SNPs_105675 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_58820 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 58821 chr1 248512430 248512430 1 + T A LUAD 248512426 + 248512406 248512446 41 TCTGTTTCTCACCATTATGGCTCATGACCGCTATGTGGCTG TCTGTTTCTCACCATTATGGCTCAAGACCGCTATGTGGCTG < 41bp 0.446689799620955 0.765302124421905 0.21251807 0.28922278 prediction 0.530604248843811 Functional Gain - OR14C36 ENSG00000177174 CDS Human protein_coding chr1:248512426 chr1:248512430 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_105676 0 0 0 0 0 unknown 0.500231643922175 0.500231643921092 0 0 hm5C_site_58821 DeepMRMD:0;iRNA_m5C:0 58822 chr11 125365372 125365372 1 + C G rs185456739 125365371 + 125365351 125365391 41 CCCGCCACCGCGCAGCCGCCCCGGTCCCTTCTCCCGCCCGT CCCGCCACCGCGCAGCCGCCCGGGTCCCTTCTCCCGCCCGT < 41bp 0.568174938299198 0.833459591434686 0.37184012 0.8505162 prediction 0.530569306270976 Functional Gain - LOC403312 ENSG00000255537 CDS Human antisense chr11:125365371 chr11:125365372 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_105677 0 0 0 0 0 unknown 0.500231635033013 0.500231645172622 0.7010324 2.02792167502963e-08 hm5C_site_58822 DeepMRMD:0.7010324;iRNA_m5C:2.02792167502963e-08 58823 chr7 99204388 99204388 1 + C G rs182148364 99204387 + 99204367 99204407 41 GCAGTTTACATCATCCTCGGCCGGGTTTTCCTGCTCTCTGC GCAGTTTACATCATCCTCGGCGGGGTTTTCCTGCTCTCTGC < 41bp 0.570387485306981 0.835668924212401 0.8322757 0.9042928 prediction 0.530562877810839 Functional Gain - TMEM225B ENSG00000244219 ncRNA_exonic Human protein_coding chr7:99204387 chr7:99204388 . . 0 22 hm5C_associated_SNPs_105678 0 0 0 0 1 unknown 0.500231643986278 0.500231643921092 0.1440342 0 hm5C_site_58823 DeepMRMD:0.1440342;iRNA_m5C:0 58824 chr19 48255810 48255810 1 + C A rs113642899 48255806 + 48255786 48255826 41 CACCAAGCCGTCCCAGGCACCCGCCGTGGAGGTGGCGCCTG CACCAAGCCGTCCCAGGCACCCGCAGTGGAGGTGGCGCCTG < 41bp 0.35365410487136 0.765276397420013 0.10435721 0.1463257 prediction 0.530552794840025 Functional Gain - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48255806 chr19:48255810 synonymous SNV . 0 25 hm5C_associated_SNPs_105679 0 0 0 0 2 unknown 0.500231643921092 0.500231655863671 0 2.38851574074772e-08 hm5C_site_58824 DeepMRMD:0;iRNA_m5C:2.38851574074772e-08 58825 chr11 5602993 5602993 1 + T A LUAD 5602989 + 5602969 5603009 41 TCCCATGCTATGTCCATATTCTCCTGGCCAGCCTCTACGTT TCCCATGCTATGTCCATATTCTCCAGGCCAGCCTCTACGTT < 41bp 0.585313203716177 0.850584214765359 0.09638244 0.9200665 prediction 0.530542022098364 Functional Gain - OR52B6 ENSG00000187747 CDS Human protein_coding chr11:5602989 chr11:5602993 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_105680 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.840133 0 hm5C_site_58825 DeepMRMD:0.840133;iRNA_m5C:0 58826 chr2 138759693 138759693 1 + T C UCEC 138759691 + 138759671 138759711 41 GTTTGCTTGGCATAAGGAGACATCATCTGAATACCAAAGTA GTTTGCTTGGCATAAGGAGACACCATCTGAATACCAAAGTA < 41bp 0.539999599450828 0.805253224363552 0.04151559 0.028250992 prediction 0.530507249825448 Functional Gain - HNMT ENSG00000150540 CDS Human protein_coding chr2:138759691 chr2:138759693 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105681 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0 8.88178419700125e-16 hm5C_site_58826 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 58827 chr19 57832059 57832059 1 + C G rs139155349 57832058 + 57832038 57832078 41 TCCGCAGCCGCCCTCCGTCTCCTCAGCCCCGACGCTGCGCC TCCGCAGCCGCCCTCCGTCTCGTCAGCCCCGACGCTGCGCC < 41bp 0.496563088784774 0.765253472103916 0.100053936 0.29988098 prediction 0.530506944207832 Functional Gain - ZNF543 ENSG00000178229 UTR5 Human protein_coding chr19:57832058 chr19:57832059 . . 0 22 hm5C_associated_SNPs_105682 0 0 0 0 0 Nucleus 0.50023164395155 0.50023164649908 0 5.09506081769473e-09 hm5C_site_58827 DeepMRMD:0;iRNA_m5C:5.09506081769473e-09 58828 chr16 682746 682746 1 + C G rs147790380 682745 + 682725 682765 41 CGACATCTGGGACGGGCAGCCCGTGTGCCGCTGCCGCGACC CGACATCTGGGACGGGCAGCCGGTGTGCCGCTGCCGCGACC < 41bp 0.574978515397519 0.840230257734785 0.2324582 0.41758886 prediction 0.530503484674532 Functional Gain - WFIKKN1 ENSG00000127578 CDS Human protein_coding chr16:682745 chr16:682746 synonymous SNV . 0 22 hm5C_associated_SNPs_105683 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_58828 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 58829 chr2 47612313 47612313 1 + C G LUSC 47612312 + 47612292 47612332 41 TTCTTCCACTCAGGTTATTTCCAGAAAGAAGAGAATGGCAA TTCTTCCACTCAGGTTATTTCGAGAAAGAAGAGAATGGCAA < 41bp 0.564590199032928 0.829785028884813 0.19598532 0.7750562 prediction 0.53038965970377 Functional Gain - EPCAM ENSG00000119888 CDS Human protein_coding chr2:47612312 chr2:47612313 synonymous SNV . 0 22 hm5C_associated_SNPs_105684 0 0 1 0 2 Endoplasmic reticulum 0.500231621296987 0.500231643974435 0.5501124 4.53548949508331e-08 hm5C_site_58829 DeepMRMD:0.5501124;iRNA_m5C:4.53548949508331e-08 58830 chr13 113338758 113338758 1 + C A rs74820478 113338754 + 113338734 113338774 41 AGACCTGCCTGTCCTCCAGCCACCCAAGACCATGCTTCTGT AGACCTGCCTGTCCTCCAGCCACCAAAGACCATGCTTCTGT < 41bp 0.439915411369509 0.765193103172719 0.08699912 0.11567816 prediction 0.530386206345439 Functional Gain - ATP11AUN ENSG00000197595 UTR3 Human lincRNA chr13:113338754 chr13:113338758 . . 0 25 hm5C_associated_SNPs_105685 0 0 0 0 0 unknown 0.50023164357776 0.500231643922603 0 6.89686752153307e-10 hm5C_site_58830 DeepMRMD:0;iRNA_m5C:6.89686752153307e-10 58831 chr1 32936856 32936856 1 + C A UCEC 32936852 + 32936832 32936872 41 TTGGAACTGGTGGTGAGAGACAGCCTTGGCGGTGGCTCGGC TTGGAACTGGTGGTGAGAGACAGCATTGGCGGTGGCTCGGC < 41bp 0.653018210431947 0.918200645454705 0.17626935 0.3079711 prediction 0.530364870045515 Functional Gain - ZBTB8B ENSG00000254553;ENSG00000273274 CDS Human other chr1:32936852 chr1:32936856 nonsynonymous SNV 0.689 0 25 hm5C_associated_SNPs_105686 0 0 0 0 0 exosome 0.500231643921098 0.500231643921092 0 0 hm5C_site_58831 DeepMRMD:0;iRNA_m5C:0 58832 chrX 22291606 22291606 1 + C A rs5951426 22291602 + 22291582 22291622 41 TCCGCCACAAACTGAAATCTCTGACATCCCTAAAAGACTGC TCCGCCACAAACTGAAATCTCTGAAATCCCTAAAAGACTGC < 41bp 0.364095377809092 0.765177731839211 0.1275563 0.13210696 prediction 0.530355463678422 Functional Gain - ZNF645 ENSG00000175809 CDS Human protein_coding chrX:22291602 chrX:22291606 nonsynonymous SNV 0.012 0 25 hm5C_associated_SNPs_105687 0 0 0 0 0 unknown 0.500231848785342 0.500231644886787 0 0 hm5C_site_58832 DeepMRMD:0;iRNA_m5C:0 58833 chr2 219299377 219299377 1 + T G HNSC 219299374 + 219299354 219299394 41 CGGGCCAATTTCCTCAATTCCAATGATGTCTTTGTCCTCAA CGGGCCAATTTCCTCAATTCCAAGGATGTCTTTGTCCTCAA < 41bp 0.363110380198524 0.765174277237926 0.12481117 0.39581686 prediction 0.530348554475851 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219299374 chr2:219299377 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_105688 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643885419 0 0 hm5C_site_58833 DeepMRMD:0;iRNA_m5C:0 58834 chr21 45994549 45994549 1 + C A PRAD 45994545 + 45994525 45994565 41 GCTGCCAGCAGTCTAGCTGCCAGCCAGCTTGCTGCACCTCC GCTGCCAGCAGTCTAGCTGCCAGCAAGCTTGCTGCACCTCC < 41bp 0.628935036733002 0.894099826147143 0.10685766 0.16316342 prediction 0.530329578828282 Functional Gain - KRTAP10-4 ENSG00000215454 CDS Human protein_coding chr21:45994545 chr21:45994549 nonsynonymous SNV 0.260 3 25 hm5C_associated_SNPs_105689 0 0 0 0 0 unknown 0.500231134923926 0.500262526537896 0 6.27832279398444e-05 hm5C_site_58834 DeepMRMD:0;iRNA_m5C:6.27832279398444e-05 58835 chr17 40705550 40705550 1 + T G STAD 40705547 + 40705527 40705567 41 GGACGTGAATGTAGTAGGGACTGTGCGGATGCTGCAGGCCT GGACGTGAATGTAGTAGGGACTGGGCGGATGCTGCAGGCCT < 41bp 0.364021298814279 0.765159319830367 0.38328174 0.8444768 prediction 0.530318639660735 Functional Gain - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40705547 chr17:40705550 nonsynonymous SNV 0.081 3 24 hm5C_associated_SNPs_105690 0 0 1 0 1 chromatin 0.500231643921834 0.500231643921126 0.6889536 0 hm5C_site_58835 DeepMRMD:0.6889536;iRNA_m5C:0 58836 chr19 13875785 13875785 1 + T G rs186809439 13875783 + 13875763 13875803 41 GGACTCGCCGCGCTCGTGGCCTTCGTGCGCGACAAGCTGAG GGACTCGCCGCGCTCGTGGCCTGCGTGCGCGACAAGCTGAG < 41bp 0.609056155210139 0.87421345758145 0.4180831 0.6328874 prediction 0.530314604742623 Functional Gain - MRI1 ENSG00000037757 CDS Human protein_coding chr19:13875783 chr19:13875785 nonsynonymous SNV 0.015 5 23 hm5C_associated_SNPs_105691 0 0 0 0 0 Ribosome 0.500231643915508 0.500231841906176 0.2657748 3.9598133505514e-07 hm5C_site_58836 DeepMRMD:0.2657748;iRNA_m5C:3.9598133505514e-07 58837 chr14 63747840 63747840 1 + T C PRAD 63747838 + 63747818 63747858 41 ATGCCTCACGTGCCTTATGTCCTCATAGGGACCCAGGTTAA ATGCCTCACGTGCCTTATGTCCCCATAGGGACCCAGGTTAA < 41bp 0.473217827954432 0.765150712009627 0.16506284 0.23134032 prediction 0.530301424019255 Functional Gain - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63747838 chr14:63747840 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_105692 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921094 0 3.99680288865056e-15 hm5C_site_58837 DeepMRMD:0;iRNA_m5C:3.99680288865056e-15 58838 chr10 135340997 135340997 1 + C G UCEC 135340993 + 135340973 135341013 41 AGGTGCACAGCAGCTGGAATCTGCCCCCAGGCCCTTTCCCG AGGTGCACAGCAGCTGGAATCTGCGCCCAGGCCCTTTCCCG < 41bp 0.555119847871257 0.820268602960961 0.12611514 0.25507146 prediction 0.530297510179409 Functional Gain - CYP2E1 ENSG00000130649 CDS Human protein_coding chr10:135340993 chr10:135340997 nonsynonymous SNV 0.978 5 25 hm5C_associated_SNPs_105693 0 0 0 0 1 exosome 0.500231643921092 0.500231643920879 0 0 hm5C_site_58838 DeepMRMD:0;iRNA_m5C:0 58839 chr14 64989463 64989463 1 + T G STAD 64989460 + 64989440 64989480 41 GCCCCCTAACAACAGCAGTCCAGTACAAGAGGATGCTGAAA GCCCCCTAACAACAGCAGTCCAGGACAAGAGGATGCTGAAA < 41bp 0.391818009805524 0.765145793068253 0.21211773 0.4163041 prediction 0.530291586136505 Functional Gain - ZBTB1 ENSG00000126804 CDS Human protein_coding chr14:64989460 chr14:64989463 nonsynonymous SNV 0.978 0 24 hm5C_associated_SNPs_105694 0 0 1 0 0 Cytosol 0.500231650706294 0.500231583254438 0 0 hm5C_site_58839 DeepMRMD:0;iRNA_m5C:0 58840 chr19 53905376 53905376 1 + T G LUAD 53905374 + 53905354 53905394 41 TCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGAC TCTCAGGAGGAGTGGAAATGCCGGGACCCTGCTCAGAGGAC < 41bp 0.423972479854825 0.765132678479693 0.0856466 0.7964055 prediction 0.530265356959386 Functional Gain - ZNF765 ENSG00000196417 CDS Human protein_coding chr19:53905374 chr19:53905376 nonsynonymous SNV 0.017 3 23 hm5C_associated_SNPs_105695 0 0 0 0 1 Nucleus 0.500231646657081 0.500231643938802 0.592811 0 hm5C_site_58840 DeepMRMD:0.592811;iRNA_m5C:0 58841 chr22 41323248 41323248 1 + C A rs57486044 41323244 + 41323224 41323264 41 TCCCAGCACTTTGGGAGGTCCAGGCAGGTGGATCTCTTGAG TCCCAGCACTTTGGGAGGTCCAGGAAGGTGGATCTCTTGAG < 41bp 0.616369398177731 0.881495199193461 0.88668716 0.9089204 prediction 0.53025160203146 Functional Gain - XPNPEP3 ENSG00000196236 UTR3 Human protein_coding chr22:41323244 chr22:41323248 . . 0 25 hm5C_associated_SNPs_105696 1 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.0444664799999999 0 hm5C_site_58841 DeepMRMD:0.0444664799999999;iRNA_m5C:0 Nephronophthisis-Like Nephropathy Nephronophthisis-Like Nephropathy 58842 chr13 31480812 31480812 1 + C A LUAD 31480808 + 31480788 31480828 41 GGTGCCTTCCAGCTGAGCGGCGACCAGCTCGTGGTGGCCAG GGTGCCTTCCAGCTGAGCGGCGACAAGCTCGTGGTGGCCAG < 41bp 0.637741313075177 0.90286113474658 0.45402867 0.5862258 prediction 0.530239643342806 Functional Gain - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31480808 chr13:31480812 nonsynonymous SNV 0.800 0 25 hm5C_associated_SNPs_105697 0 0 0 0 0 exosome 0.500231643921092 0.50023164392109 0.1724516 0 hm5C_site_58842 DeepMRMD:0.1724516;iRNA_m5C:0 58843 chr10 25464486 25464486 1 + C A CESC 25464482 + 25464462 25464502 41 GGACCCCGAAGGGGAAGCCGCACGCCCAGCAGCCGGGTCGA GGACCCCGAAGGGGAAGCCGCACGACCAGCAGCCGGGTCGA < 41bp 0.630751982154935 0.89587001399261 0.11662111 0.20290369 prediction 0.530236063675349 Functional Gain - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25464482 chr10:25464486 nonsynonymous SNV 0.949 0 25 hm5C_associated_SNPs_105698 0 0 0 0 0 Endoplasmic reticulum 0.500231643921121 0.500231643921094 0 0 hm5C_site_58843 DeepMRMD:0;iRNA_m5C:0 58844 chrX 78010591 78010591 1 + T A BLCA 78010587 + 78010567 78010607 41 CATGAAAATGAGAAGTGAGACTGCTATTTTTATCACCAATC CATGAAAATGAGAAGTGAGACTGCAATTTTTATCACCAATC < 41bp 0.450732512783025 0.76510794109914 0.12412664 0.12465757 prediction 0.530215882198281 Functional Gain - LPAR4 ENSG00000147145 CDS Human protein_coding chrX:78010587 chrX:78010591 synonymous SNV . 0 25 hm5C_associated_SNPs_105699 0 0 0 0 0 exosome 0.500231644680926 0.500231647428727 0 5.49560374984992e-09 hm5C_site_58844 DeepMRMD:0;iRNA_m5C:5.49560374984992e-09 58845 chr6 26273356 26273356 1 + C G BLCA 26273355 + 26273335 26273375 41 GGTGCTGAAGCAGGTCCACCCCGACACCGGCATCTCGTCCA GGTGCTGAAGCAGGTCCACCCGGACACCGGCATCTCGTCCA < 41bp 0.461353356886526 0.765100230220024 0.070999354 0.1678662 prediction 0.530200460440048 Functional Gain - HIST1H2BI ENSG00000168242 CDS Human other chr6:26273355 chr6:26273356 synonymous SNV . 0 22 hm5C_associated_SNPs_105700 0 0 0 0 0 exosome 0.500231314387985 0.500231787479376 0 9.46182782124438e-07 hm5C_site_58845 DeepMRMD:0;iRNA_m5C:9.46182782124438e-07 58846 chr17 34941826 34941826 1 + T C UCEC 34941824 + 34941804 34941844 41 AATTGTTACCAATGAAAATACATCATGTACCTGTCCTAGCA AATTGTTACCAATGAAAATACACCATGTACCTGTCCTAGCA < 41bp 0.546573336635659 0.811645827048703 0.014350891 0.009677023 prediction 0.530144980826087 Functional Gain - GGNBP2 ENSG00000005955 CDS Human other chr17:34941824 chr17:34941826 nonsynonymous SNV 0.986 1 23 hm5C_associated_SNPs_105701 0 0 1 0 2 Nucleus 0.500231644035642 0.50023164393612 0 0 hm5C_site_58846 DeepMRMD:0;iRNA_m5C:0 58847 chrX 37026473 37026473 1 + C A rs61730912 37026469 + 37026449 37026489 41 GAAACTGGAGAGGTGGCACCCCAGCGAGGGCCACCATGGGG GAAACTGGAGAGGTGGCACCCCAGAGAGGGCCACCATGGGG < 41bp 0.540966771949809 0.80603766650515 0.46775612 0.84649396 prediction 0.530141789110682 Functional Gain - FAM47C ENSG00000198173 UTR5 Human protein_coding chrX:37026469 chrX:37026473 . . 0 25 hm5C_associated_SNPs_105702 0 0 0 0 0 unknown 0.500231643921092 0.500231643921185 0.69298792 1.85851334322251e-13 hm5C_site_58847 DeepMRMD:0.69298792;iRNA_m5C:1.85851334322251e-13 58848 chr1 241752098 241752098 1 + C G LUAD 241752094 + 241752074 241752114 41 GATTGAGAATCCCAGATGATCACGCGATTTCAGACCTATCC GATTGAGAATCCCAGATGATCACGGGATTTCAGACCTATCC < 41bp 0.496804911251965 0.765070369428549 0.8812728 0.91230255 prediction 0.530140738857097 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241752094 chr1:241752098 nonsynonymous SNV 0.091 4 25 hm5C_associated_SNPs_105703 0 0 0 0 2 Nucleus 0.500231643683347 0.500231643921092 0.0620595000000002 4.75489425610931e-10 hm5C_site_58848 DeepMRMD:0.0620595000000002;iRNA_m5C:4.75489425610931e-10 58849 chr15 81592440 81592440 1 + C G LGG 81592439 + 81592419 81592459 41 GGTGTGTCTGAGTCCCCTCCCCCAGGGCGGCAGCCCAATCA GGTGTGTCTGAGTCCCCTCCCGCAGGGCGGCAGCCCAATCA < 41bp 0.472679863775552 0.765070308853086 0.15749285 0.7167225 prediction 0.530140617706173 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81592439 chr15:81592440 nonsynonymous SNV 0.081 0 22 hm5C_associated_SNPs_105704 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.433445 0 hm5C_site_58849 DeepMRMD:0.433445;iRNA_m5C:0 58850 chr17 51901239 51901239 1 + T A LUAD 51901235 + 51901215 51901255 41 CCTCCAACGAGTTGGTGTACCAGTTCACCGCCCAGCCACTG CCTCCAACGAGTTGGTGTACCAGTACACCGCCCAGCCACTG < 41bp 0.574779560302745 0.839844670894664 0.1155386 0.08338764 prediction 0.530130221183837 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901235 chr17:51901239 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_105705 0 0 0 0 0 exosome 0.500231313934178 0.500231498827962 0 3.69787568343938e-07 hm5C_site_58850 DeepMRMD:0;iRNA_m5C:3.69787568343938e-07 58851 chr2 27275949 27275949 1 + C A ESCA 27275945 + 27275925 27275965 41 AGGGGTAGGAGGTGGGGCGTCAGCCCTGACCAGTGGCATTG AGGGGTAGGAGGTGGGGCGTCAGCACTGACCAGTGGCATTG < 41bp 0.651046293151638 0.91611108354787 0.80930114 0.7575926 prediction 0.530129580792464 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27275945 chr2:27275949 synonymous SNV . 0 25 hm5C_associated_SNPs_105706 0 0 1 0 1 Cytosol 0.500231643921092 0.500228909466829 0 0 hm5C_site_58851 DeepMRMD:0;iRNA_m5C:0 58852 chr21 45994266 45994266 1 + C A LUAD 45994262 + 45994242 45994282 41 TCCTGCACGCCCTCGTGCTGCCAGCAGTCTAGCTGCCAGCC TCCTGCACGCCCTCGTGCTGCCAGAAGTCTAGCTGCCAGCC < 41bp 0.393626412434285 0.765064765911632 0.24707475 0.39748123 prediction 0.530129531823264 Functional Gain - KRTAP10-4 ENSG00000215454 CDS Human protein_coding chr21:45994262 chr21:45994266 nonsynonymous SNV 0.990 0 25 hm5C_associated_SNPs_105707 0 0 0 0 0 unknown 0.500234310326308 0.50023164392111 0 0 hm5C_site_58852 DeepMRMD:0;iRNA_m5C:0 58853 chr11 51516002 51516002 1 + C A LUAD 51515998 + 51515978 51516018 41 AAAGCCCTCTCCACCTGTGTCTCCCACATCACGGTTGTCAT AAAGCCCTCTCCACCTGTGTCTCCAACATCACGGTTGTCAT < 41bp 0.347882436837816 0.765055673876827 0.0797964 0.96171355 prediction 0.530111347753654 Functional Gain - OR4C46 ENSG00000185926 CDS Human protein_coding chr11:51515998 chr11:51516002 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105708 0 0 0 0 0 unknown 0.500231152206449 0.500231628467802 0.9234271 9.52522704711356e-07 hm5C_site_58853 DeepMRMD:0.9234271;iRNA_m5C:9.52522704711356e-07 58854 chr1 207818592 207818592 1 + T G KIRP 207818590 + 207818570 207818610 41 GCGCCGCTCATGGCGCCTCCCGTCCGTCTCGAGCGTCCCTT GCGCCGCTCATGGCGCCTCCCGGCCGTCTCGAGCGTCCCTT < 41bp 0.41741611981027 0.765052935320786 0.052748263 0.5504298 prediction 0.530105870641572 Functional Gain - CR1L ENSG00000197721 CDS Human protein_coding chr1:207818590 chr1:207818592 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_105709 0 0 1 0 1 Endoplasmic reticulum 0.500231643920473 0.50023164392109 0.1008596 1.23256960193885e-12 hm5C_site_58854 DeepMRMD:0.1008596;iRNA_m5C:1.23256960193885e-12 58855 chr3 150176547 150176547 1 + T G rs144546551 150176544 + 150176524 150176564 41 GGTTGTGTGTTTGGCCTTTTCAGTATTAGACAATCATTCTA GGTTGTGTGTTTGGCCTTTTCAGGATTAGACAATCATTCTA < 41bp 0.421443616171317 0.765048422167868 0.29740876 0.91941845 prediction 0.530096844335736 Functional Gain - TSC22D2 ENSG00000196428 UTR3 Human protein_coding chr3:150176544 chr3:150176547 . . 0 24 hm5C_associated_SNPs_105710 0 0 1 4 0 Ribosome 0.500231643921092 0.500231643921103 0.8388369 2.1094237467878e-14 hm5C_site_58855 DeepMRMD:0.8388369;iRNA_m5C:2.1094237467878e-14 58856 chr10 75527635 75527635 1 + C G LUAD 75527631 + 75527611 75527651 41 AGACAGGTGCCTATCAGACCCTGGCCAAAGAGTGTGTGGCC AGACAGGTGCCTATCAGACCCTGGGCAAAGAGTGTGTGGCC < 41bp 0.532207636672783 0.797242957284541 0.07016006 0.34384584 prediction 0.530070641223517 Functional Gain - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75527631 chr10:75527635 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_105711 0 0 1 0 1 Nucleus 0.500231643979692 0.500231643921182 0 0 hm5C_site_58856 DeepMRMD:0;iRNA_m5C:0 58857 chr1 33945237 33945237 1 + T C COAD 33945235 + 33945215 33945255 41 CCTGGGTGCAGGCACGCCACCCTGAGAGTGGTGAGGAGGCT CCTGGGTGCAGGCACGCCACCCCGAGAGTGGTGAGGAGGCT < 41bp 0.489871664086996 0.765027555946473 0.031369805 0.038561225 prediction 0.530055111892946 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33945235 chr1:33945237 synonymous SNV . 0 23 hm5C_associated_SNPs_105712 0 0 0 0 1 exosome 0.500231643921092 0.500231643707683 0 0 hm5C_site_58857 DeepMRMD:0;iRNA_m5C:0 58858 chr9 140056475 140056475 1 + C A UCEC 140056471 + 140056451 140056491 41 GCGCCGCTAACCATAAACAACGAGCGCGCGCAGTACATCGA GCGCCGCTAACCATAAACAACGAGAGCGCGCAGTACATCGA < 41bp 0.355279337279744 0.765024981398324 0.38306305 0.27030516 prediction 0.530049962796647 Functional Gain - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140056471 chr9:140056475 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_105713 0 0 0 0 2 exosome 0.500231802346749 0.500231644980498 0 0 hm5C_site_58858 DeepMRMD:0;iRNA_m5C:0 58859 chr15 25444470 25444470 1 + C G rs113238127 25444469 + 25444449 25444489 41 CCCAGGCCAGTGGCCATCAGCCAGGTGCCCACCCTGGTGTG CCCAGGCCAGTGGCCATCAGCGAGGTGCCCACCCTGGTGTG < 41bp 0.551602081608484 0.816626330777347 0.8639916 0.93612564 prediction 0.530048498337727 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25444469 chr15:25444470 . . 0 22 hm5C_associated_SNPs_105714 0 0 0 0 2 unknown 0.500231643920691 0.500231643894701 0.14426808 0 hm5C_site_58859 DeepMRMD:0.14426808;iRNA_m5C:0 58860 chr12 82752386 82752386 1 + C G SARC 82752385 + 82752365 82752405 41 CCCGGTGACCCCGGACCTGCCCACGCTGCGTGCCAAGTTGC CCCGGTGACCCCGGACCTGCCGACGCTGCGTGCCAAGTTGC < 41bp 0.577377425414622 0.842398642353199 0.2898257 0.6033954 prediction 0.530042433877155 Functional Gain - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82752385 chr12:82752386 synonymous SNV . 0 22 hm5C_associated_SNPs_105715 0 0 1 0 0 cytosol 0.500231643899529 0.500231643921092 0.2067908 4.31259472577494e-11 hm5C_site_58860 DeepMRMD:0.2067908;iRNA_m5C:4.31259472577494e-11 58861 chr10 112270038 112270038 1 + T G LUSC 112270036 + 112270016 112270056 41 CCAAGGGGAGGCAGCAGGCTCTTCACTGATAGGCCATTTGC CCAAGGGGAGGCAGCAGGCTCTGCACTGATAGGCCATTTGC < 41bp 0.586213540407384 0.85123187305192 0.16101107 0.120687276 prediction 0.530036665289072 Functional Gain - DUSP5 ENSG00000138166 CDS Human protein_coding chr10:112270036 chr10:112270038 nonsynonymous SNV 0.019 0 23 hm5C_associated_SNPs_105716 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921103 0 2.17603712826531e-14 hm5C_site_58861 DeepMRMD:0;iRNA_m5C:2.17603712826531e-14 58862 chr21 46021232 46021232 1 + C G BLCA 46021228 + 46021208 46021248 41 CCAGCAGGCCTGCTGTGTGCCTGTCTGCTGCAAGCCCGTCT CCAGCAGGCCTGCTGTGTGCCTGTGTGCTGCAAGCCCGTCT < 41bp 0.484561220764452 0.765016800694792 0.033620596 0.05166787 prediction 0.530033601389583 Functional Gain - KRTAP10-7 ENSG00000205441 CDS Human other chr21:46021228 chr21:46021232 synonymous SNV . 0 25 hm5C_associated_SNPs_105717 0 0 0 0 0 unknown 0.500231643920722 0.500231643921044 0 6.44595488097366e-13 hm5C_site_58862 DeepMRMD:0;iRNA_m5C:6.44595488097366e-13 58863 chr1 240072077 240072077 1 + C G SKCM 240072073 + 240072053 240072093 41 CGTGGACACAGCTAAGACTTCTGACGTCAACTCCTCAGTGG CGTGGACACAGCTAAGACTTCTGAGGTCAACTCCTCAGTGG < 41bp 0.479720217975254 0.765014243859906 0.24437672 0.3295967 prediction 0.530028487719813 Functional Gain - CHRM3 ENSG00000133019 CDS Human protein_coding chr1:240072073 chr1:240072077 nonsynonymous SNV 0.018 0 25 hm5C_associated_SNPs_105718 0 0 0 0 0 exosome 0.500230270995022 0.500234922235614 0 9.30248118424792e-06 hm5C_site_58863 DeepMRMD:0;iRNA_m5C:9.30248118424792e-06 58864 chr9 71152371 71152371 1 + T A HNSC 71152367 + 71152347 71152387 41 GCAGGACAGCTCTGCTTTTCCACCTCAAGGCTCTCTTCATA GCAGGACAGCTCTGCTTTTCCACCACAAGGCTCTCTTCATA < 41bp 0.454749864733364 0.765009160284266 0.05224362 0.015126497 prediction 0.530018320568531 Functional Gain - TMEM252 ENSG00000181778 CDS Human protein_coding chr9:71152367 chr9:71152371 nonsynonymous SNV 0.056 1 25 hm5C_associated_SNPs_105719 0 0 0 0 0 exosome 0.500235298527907 0.500263197634191 0 5.57982125695133e-05 hm5C_site_58864 DeepMRMD:0;iRNA_m5C:5.57982125695133e-05 58865 chr8 10396253 10396253 1 + C G LUAD 10396249 + 10396229 10396269 41 GAGCCAGGCAGCCCCAGATCCTGGCTCCTGCTCTGTCCCCT GAGCCAGGCAGCCCCAGATCCTGGGTCCTGCTCTGTCCCCT < 41bp 0.569549709414824 0.834557684771876 0.8123831 0.8961096 prediction 0.530015950714104 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10396249 chr8:10396253 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_105720 0 0 0 0 0 exosome 0.500231643921092 0.500231643921085 0.167453 0 hm5C_site_58865 DeepMRMD:0.167453;iRNA_m5C:0 58866 chr6 26423283 26423283 1 + T G GBM 26423280 + 26423260 26423300 41 ACATGGAGGTGCGGTGGTTCCAGTCTCAGTTCTCCCCTGCA ACATGGAGGTGCGGTGGTTCCAGGCTCAGTTCTCCCCTGCA < 41bp 0.380475265193024 0.765000845472978 0.26421463 0.8922496 prediction 0.530001690945955 Functional Gain - BTN2A3P ENSG00000124549 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:26423280 chr6:26423283 . . 0 24 hm5C_associated_SNPs_105721 0 0 0 1 0 unknown 0.500231643920843 0.500231643751766 0.7844992 0 hm5C_site_58866 DeepMRMD:0.7844992;iRNA_m5C:0 58867 chr8 10388999 10388999 1 + C G KIRP 10388998 + 10388978 10389018 41 CCATCTGCCTCCCCACGCAGCCCGGCCCTGCCACATGGCGC CCATCTGCCTCCCCACGCAGCGCGGCCCTGCCACATGGCGC < 41bp 0.454174972623187 0.764999671111677 0.012499899 0.06597522 prediction 0.529999342223353 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10388998 chr8:10388999 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_105722 0 0 0 0 1 exosome 0.500231643921125 0.500231643921092 0 0 hm5C_site_58867 DeepMRMD:0;iRNA_m5C:0 58868 chr8 8086135 8086135 1 + C A rs184778446 8086131 + 8086111 8086151 41 CGGCCCCGCCCACATCATGACGCCCGAGGAGAACGCGGGTA CGGCCCCGCCCACATCATGACGCCAGAGGAGAACGCGGGTA < 41bp 0.392917983949178 0.764997728779605 0.19233438 0.44097406 prediction 0.529995457559211 Functional Gain - FAM86B3P ENSG00000173295 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr8:8086131 chr8:8086135 . . 0 25 hm5C_associated_SNPs_105723 0 0 0 0 1 unknown 0.500231643921092 0.500231643915446 0 0 hm5C_site_58868 DeepMRMD:0;iRNA_m5C:0 58869 chr2 106509686 106509686 1 + C G rs77936916 106509685 + 106509665 106509705 41 CCCACGGTGGAGCTGCCCGCCCGGCCTTGTGGCAGAGGCTC CCCACGGTGGAGCTGCCCGCCGGGCCTTGTGGCAGAGGCTC < 41bp 0.545306888575783 0.810296323097185 0.15039799 0.6800716 prediction 0.529978869042804 Functional Gain - NCK2 ENSG00000071051 UTR3 Human protein_coding chr2:106509685 chr2:106509686 . . 0 22 hm5C_associated_SNPs_105724 0 0 0 0 0 Ribosome 0.500231643920476 0.500231648530119 0.3601432 9.21928555719376e-09 hm5C_site_58869 DeepMRMD:0.3601432;iRNA_m5C:9.21928555719376e-09 58870 chr7 154863068 154863068 1 + C G rs141661272 154863067 + 154863047 154863087 41 CATGGAATACACGCTCCGCACCCGCAAGTGCGTCTCCAACG CATGGAATACACGCTCCGCACGCGCAAGTGCGTCTCCAACG < 41bp 0.453305190565702 0.764980193487082 0.030626267 0.10122019 prediction 0.529960386974165 Functional Gain - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154863067 chr7:154863068 synonymous SNV . 0 22 hm5C_associated_SNPs_105725 0 0 0 0 0 exosome 0.499767572547378 0.500231633814506 0 0.000463267629011499 hm5C_site_58870 DeepMRMD:0;iRNA_m5C:0.000463267629011499 58871 chr15 25444470 25444470 1 + C G rs113238127 25444466 + 25444446 25444486 41 GGACCCAGGCCAGTGGCCATCAGCCAGGTGCCCACCCTGGT GGACCCAGGCCAGTGGCCATCAGCGAGGTGCCCACCCTGGT < 41bp 0.480983218897769 0.764975159427944 0.30973044 0.8477719 prediction 0.529950318855887 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25444466 chr15:25444470 . . 0 25 hm5C_associated_SNPs_105726 0 0 0 0 2 unknown 0.500231643921092 0.500231640528305 0.6955438 0 hm5C_site_58871 DeepMRMD:0.6955438;iRNA_m5C:0 58872 chr12 56491687 56491687 1 + C A UCEC 56491683 + 56491663 56491703 41 ATTTTGGTGTGGCTGACCTGCTGCCTCCTGATGATAAGCAG ATTTTGGTGTGGCTGACCTGCTGCATCCTGATGATAAGCAG < 41bp 0.349084645854701 0.764970823052913 0.32947385 0.25411516 prediction 0.529941646105826 Functional Gain - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56491683 chr12:56491687 nonsynonymous SNV 0.870 1 25 hm5C_associated_SNPs_105727 0 0 1 0 1 Cytosol 0.500231645331399 0.500082184649209 0 0 hm5C_site_58872 DeepMRMD:0;iRNA_m5C:0 58873 chr10 90503075 90503075 1 + T C rs390152 90503073 + 90503053 90503093 41 ATCAGAACATGATGCACTTCCATCAGGTACAAAAATAATCC ATCAGAACATGATGCACTTCCACCAGGTACAAAAATAATCC < 41bp 0.51515115893473 0.780110580762611 0.06696266 0.11282405 prediction 0.529918843655762 Functional Gain - LIPK ENSG00000204021 CDS Human protein_coding chr10:90503073 chr10:90503075 synonymous SNV . 0 23 hm5C_associated_SNPs_105728 0 0 0 0 2 exosome 0.50023164392388 0.500231643938554 0 2.9348745655966e-11 hm5C_site_58873 DeepMRMD:0;iRNA_m5C:2.9348745655966e-11 58874 chr7 116380952 116380952 1 + C A SKCM 116380948 + 116380928 116380968 41 GCTTGGGCTGCAGACATTTCCAGTCCTGCAGTCAATGCCTC GCTTGGGCTGCAGACATTTCCAGTACTGCAGTCAATGCCTC < 41bp 0.387902538582189 0.764956713598001 0.25120687 0.1379905 prediction 0.529913427196002 Functional Gain - MET ENSG00000105976 CDS Human protein_coding chr7:116380948 chr7:116380952 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_105729 0 0 1 0 1 Cytosol 0.500231643921089 0.500231643898874 0 0 hm5C_site_58874 DeepMRMD:0;iRNA_m5C:0 58875 chr12 1895373 1895373 1 + T G rs758169 1895370 + 1895350 1895390 41 TCGTGGGCTTTGTGACGGCCCAGTGGCTCTGCGTGGTACAT TCGTGGGCTTTGTGACGGCCCAGGGGCTCTGCGTGGTACAT < 41bp 0.384362203347134 0.764945099173315 0.09164274 0.6094264 prediction 0.52989019834663 Functional Gain - ADIPOR2 ENSG00000006831 UTR3 Human protein_coding chr12:1895370 chr12:1895373 . . 0 24 hm5C_associated_SNPs_105730 0 0 1 0 0 chromatin 0.500231665546551 0.500231643920755 0.2188528 0 hm5C_site_58875 DeepMRMD:0.2188528;iRNA_m5C:0 58876 chrX 102864251 102864251 1 + C G rs12009847 102864247 + 102864227 102864267 41 CAAGGCGAGGGCAAGCCAGCCTCCCAGGCAAAGCCAGAGAG CAAGGCGAGGGCAAGCCAGCCTCCGAGGCAAAGCCAGAGAG < 41bp 0.541802981546306 0.806741028810834 0.21033847 0.34849763 prediction 0.529876094529057 Functional Gain - TCEAL3 ENSG00000196507 CDS Human protein_coding chrX:102864247 chrX:102864251 nonsynonymous SNV 0.546 0 25 hm5C_associated_SNPs_105731 0 0 0 0 0 exosome 0.500231643799579 0.500231638791729 0 0 hm5C_site_58876 DeepMRMD:0;iRNA_m5C:0 58877 chr7 72300022 72300022 1 + C G rs188621959 72300021 + 72300001 72300041 41 CATCGCTCACTTCTCCCCTCCCGGCTTCTGCTCCACCTGAC CATCGCTCACTTCTCCCCTCCGGGCTTCTGCTCCACCTGAC < 41bp 0.460844463197894 0.764928134124021 0.86305 0.9346107 prediction 0.529856268248041 Functional Gain - SBDSP1 ENSG00000225648 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:72300021 chr7:72300022 . . 0 22 hm5C_associated_SNPs_105732 0 0 0 0 0 unknown 0.500231654977549 0.500231643921124 0.1431214 0 hm5C_site_58877 DeepMRMD:0.1431214;iRNA_m5C:0 58878 chr19 7855496 7855496 1 + C G rs4387698 7855492 + 7855472 7855512 41 GATGAGAAGGCTGGCCGGATCTGTCAGCAGAGGCACGGTGC GATGAGAAGGCTGGCCGGATCTGTGAGCAGAGGCACGGTGC < 41bp 0.550242778844362 0.815168707093391 0.22823995 0.4695109 prediction 0.529851856498056 Functional Gain - CLEC4GP1 ENSG00000268297 ncRNA_exonic Human unprocessed_pseudogene chr19:7855492 chr19:7855496 . . 0 25 hm5C_associated_SNPs_105733 0 0 0 0 0 unknown 0.500231643929129 0.500231643977678 0 9.70974411984571e-11 hm5C_site_58878 DeepMRMD:0;iRNA_m5C:9.70974411984571e-11 58879 chr1 11775212 11775212 1 + C T COAD 11775211 + 11775191 11775231 41 TGCGGGAGCATCTCTGCACACCCCACAACCGAGGCCTCAAC TGCGGGAGCATCTCTGCACACTCCACAACCGAGGCCTCAAC < 41bp 0.530400758225608 0.795316968613554 0.006518036 0.89812726 prediction 0.529832420775891 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11775211 chr1:11775212 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_105734 0 0 0 0 2 exosome 0.500231645548528 0.500231870675227 0.79625452 4.50253398787126e-07 hm5C_site_58879 DeepMRMD:0.79625452;iRNA_m5C:4.50253398787126e-07 58880 chr15 80215370 80215370 1 + C A STAD 80215366 + 80215346 80215386 41 CAGAGCAAGACCACGAGTACCCGCCGAGAGCGGACCTGGCT CAGAGCAAGACCACGAGTACCCGCAGAGAGCGGACCTGGCT < 41bp 0.382929050521869 0.764911125737654 0.18714395 0.20995772 prediction 0.529822251475307 Functional Gain - ST20-AS1 ENSG00000259642 CDS Human antisense chr15:80215366 chr15:80215370 synonymous SNV . 0 25 hm5C_associated_SNPs_105735 0 0 0 0 0 unknown 0.500231644726301 0.500231643922277 0 0 hm5C_site_58880 DeepMRMD:0;iRNA_m5C:0 58881 chr17 56277106 56277106 1 + T A rs33955150 56277102 + 56277082 56277122 41 CCGGGCCTCCGCACCCAACTCGCATGTCCCACTTAGCTCTG CCGGGCCTCCGCACCCAACTCGCAAGTCCCACTTAGCTCTG < 41bp 0.601405902516918 0.86631072928178 0.07356349 0.12726673 prediction 0.529809653529725 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56277102 chr17:56277106 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_105736 0 0 0 0 1 chromatin 0.500231643920537 0.500231643921092 0 1.11133324764978e-12 hm5C_site_58881 DeepMRMD:0;iRNA_m5C:1.11133324764978e-12 58882 chr2 10091933 10091933 1 + T A COAD 10091929 + 10091909 10091949 41 ACTGTCCCAACCCGAAAGTCCAGTTCTGCGGCCCGGCAGCG ACTGTCCCAACCCGAAAGTCCAGTACTGCGGCCCGGCAGCG < 41bp 0.546693181976839 0.811595587060481 0.31695092 0.25769144 prediction 0.529804810167282 Functional Gain - GRHL1 ENSG00000134317 UTR5 Human protein_coding chr2:10091929 chr2:10091933 . . 0 25 hm5C_associated_SNPs_105737 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0 4.44089209850063e-16 hm5C_site_58882 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 58883 chrX 120181573 120181573 1 + C A LUAD 120181569 + 120181549 120181589 41 ACCTGGCCAAAGCGCTGCTGCCGTCCCGGGCCGGGCCCGCT ACCTGGCCAAAGCGCTGCTGCCGTACCGGGCCGGGCCCGCT < 41bp 0.405514425452033 0.764901095266716 0.12911856 0.16948432 prediction 0.529802190533432 Functional Gain - GLUD2 ENSG00000182890 CDS Human protein_coding chrX:120181569 chrX:120181573 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_105738 0 0 0 0 0 Ribosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_58883 DeepMRMD:0;iRNA_m5C:0 58884 chr2 162273300 162273300 1 + C G MESO 162273299 + 162273279 162273319 41 CCCAGTGCCATGTTCCCGTACCCCGGCCAGCACGGACCGGC CCCAGTGCCATGTTCCCGTACGCCGGCCAGCACGGACCGGC < 41bp 0.450349601042774 0.764896978004642 0.2021715 0.23512876 prediction 0.529793956009284 Functional Gain - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162273299 chr2:162273300 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_105739 0 0 0 0 0 exosome 0.500231660209622 0.500231643754769 0 0 hm5C_site_58884 DeepMRMD:0;iRNA_m5C:0 58885 chr22 21799327 21799327 1 + T C STAD 21799325 + 21799305 21799345 41 ACCAAGGGCTTCCTGTGTGACGTCATCATCATGGTGGAGAA ACCAAGGGCTTCCTGTGTGACGCCATCATCATGGTGGAGAA < 41bp 0.502748643203064 0.767640687536093 0.028270513 0.025562257 prediction 0.52978408866606 Functional Gain - HIC2 ENSG00000169635 CDS Human protein_coding chr22:21799325 chr22:21799327 nonsynonymous SNV 0.992 4 23 hm5C_associated_SNPs_105740 0 0 1 0 0 chromatin 0.500226395574894 0.500227905011834 0 3.01887388087785e-06 hm5C_site_58885 DeepMRMD:0;iRNA_m5C:3.01887388087785e-06 58886 chr9 21854717 21854717 1 + C G ESCA 21854713 + 21854693 21854733 41 ATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCAT ATCGAGGGACCTCGTTTTAGCTCCGGGGCAGAAAGCTTCAT < 41bp 0.504972539528922 0.769859265852411 0.03737676 0.120518744 prediction 0.529773452646979 Functional Gain - MTAP ENSG00000099810 CDS Human protein_coding chr9:21854713 chr9:21854717 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_105741 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921093 0 1.77635683940025e-15 hm5C_site_58886 DeepMRMD:0;iRNA_m5C:1.77635683940025e-15 58887 chr10 134944225 134944225 1 + C A rs116581040 134944221 + 134944201 134944241 41 AAACACATGTGCATATCACACACGCGCACACACCCAAACAC AAACACATGTGCATATCACACACGAGCACACACCCAAACAC < 41bp 0.417166668228016 0.764881445787818 0.052970648 0.03217247 prediction 0.529762891575637 Functional Gain - ADGRA1 ENSG00000197177 UTR3 Human protein_coding chr10:134944221 chr10:134944225 . . 0 25 hm5C_associated_SNPs_105742 0 0 0 0 0 Nucleus 0.500439619461593 0.500170763692551 0 0 hm5C_site_58887 DeepMRMD:0;iRNA_m5C:0 58888 chr11 49974685 49974685 1 + C G LUAD 49974681 + 49974661 49974701 41 GGCAAGGCACGAAGCCCTCTCTACCTGTGTCTCCCACATCA GGCAAGGCACGAAGCCCTCTCTACGTGTGTCTCCCACATCA < 41bp 0.531084723005319 0.795964751170164 0.14885578 0.3286006 prediction 0.529760056329689 Functional Gain - OR4C13 ENSG00000258817 CDS Human protein_coding chr11:49974681 chr11:49974685 synonymous SNV . 0 25 hm5C_associated_SNPs_105743 0 0 0 0 0 unknown 0.500231643921081 0.500231644300409 0 7.586573591567e-10 hm5C_site_58888 DeepMRMD:0;iRNA_m5C:7.586573591567e-10 58889 chr16 2580462 2580462 1 + T G BRCA 2580459 + 2580439 2580479 41 GGCTTCTGGAGCCCTCTTGGCTCTGAGGACAGCCACAGTGG GGCTTCTGGAGCCCTCTTGGCTCGGAGGACAGCCACAGTGG < 41bp 0.368171153156553 0.764872345938782 0.28567725 0.5244905 prediction 0.529744691877563 Functional Gain - AMDHD2;CEMP1 ENSG00000162066;ENSG00000205923 CDS Human other chr16:2580459 chr16:2580462 nonsynonymous SNV 0.001 1 24 hm5C_associated_SNPs_105744 0 0 1 0 0 unknown 0.500231643922652 0.50023164152289 0.0489809999999999 0 hm5C_site_58889 DeepMRMD:0.0489809999999999;iRNA_m5C:0 58890 chr6 143792536 143792536 1 + C G rs199781957 143792535 + 143792515 143792555 41 TACAGACAATTCTTGCTCCCCCAGATGTCCAACAGCAGTAT TACAGACAATTCTTGCTCCCCGAGATGTCCAACAGCAGTAT < 41bp 0.460166302130928 0.764855919728584 0.13664126 0.21701899 prediction 0.529711839457168 Functional Gain - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143792535 chr6:143792536 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_105745 2 0 0 0 2 chromatin 0.500231676469778 0.500232620872438 0 1.88880531970526e-06 hm5C_site_58890 DeepMRMD:0;iRNA_m5C:1.88880531970526e-06 not specified not specified 58891 chr7 128852025 128852025 1 + T G KIRC 128852022 + 128852002 128852042 41 CACCCCCCTGCCCCTGCCCCCAGTACCATTCCTCGACTGCC CACCCCCCTGCCCCTGCCCCCAGGACCATTCCTCGACTGCC < 41bp 0.369060715116406 0.764853786077305 0.27092797 0.8990303 prediction 0.529707572154611 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128852022 chr7:128852025 nonsynonymous SNV 0.029 5 24 hm5C_associated_SNPs_105746 0 0 0 0 0 cytosol 0.500231643921092 0.50023164392109 0.7980606 0 hm5C_site_58891 DeepMRMD:0.7980606;iRNA_m5C:0 58892 chr6 132874511 132874511 1 + C A BLCA 132874507 + 132874487 132874527 41 TTTTTCTTATAGCTAAACAACAAGCTATAAAAATTGAAACT TTTTTCTTATAGCTAAACAACAAGATATAAAAATTGAAACT < 41bp 0.398838351389843 0.764851990152978 0.44953153 0.35476878 prediction 0.529703980305957 Functional Gain - TAAR8 ENSG00000146385 CDS Human protein_coding chr6:132874507 chr6:132874511 nonsynonymous SNV 0.022 4 25 hm5C_associated_SNPs_105747 0 0 0 0 0 unknown 0.500215142970768 0.500231457922975 0 3.26299044148826e-05 hm5C_site_58892 DeepMRMD:0;iRNA_m5C:3.26299044148826e-05 58893 chr16 55516934 55516934 1 + T C STAD 55516932 + 55516912 55516952 41 GACTGCCCCAGACAGGTGATCTTGACCAGAATACCATCGAG GACTGCCCCAGACAGGTGATCTCGACCAGAATACCATCGAG < 41bp 0.481337857347926 0.764850760654297 0.21104857 0.28492993 prediction 0.529701521308594 Functional Gain - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55516932 chr16:55516934 synonymous SNV . 0 23 hm5C_associated_SNPs_105748 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921037 0 0 hm5C_site_58893 DeepMRMD:0;iRNA_m5C:0 58894 chr19 18684538 18684538 1 + C G BLCA 18684534 + 18684514 18684554 41 AGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAG AGCTGGAGGATGGCCGCACTCTCTGAGACTACAACATCCAG < 41bp 0.53547809779178 0.800323112711775 0.0420084 0.044707328 prediction 0.52969002983999 Functional Gain - UBA52 ENSG00000221983 CDS Human protein_coding chr19:18684534 chr19:18684538 stopgain 0.963 1 25 hm5C_associated_SNPs_105749 0 0 1 0 2 Ribosome 0.500231758182137 0.500231648499741 0 0 hm5C_site_58894 DeepMRMD:0;iRNA_m5C:0 58895 chr20 39986541 39986541 1 + T G STAD 39986538 + 39986518 39986558 41 TCAGAAATGGGTACAAGTTCCTGTACTGCTCGGCGCGGGCC TCAGAAATGGGTACAAGTTCCTGGACTGCTCGGCGCGGGCC < 41bp 0.644024511464239 0.908849198185351 0.11211771 0.49072996 prediction 0.529649373442223 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39986538 chr20:39986541 nonsynonymous SNV 0.997 5 24 hm5C_associated_SNPs_105750 0 0 0 1 2 Nucleus 0.500231643921092 0.500231643948798 0 5.54118972928563e-11 hm5C_site_58895 DeepMRMD:0;iRNA_m5C:5.54118972928563e-11 58896 chr1 150479482 150479482 1 + T G LUSC 150479479 + 150479459 150479499 41 GGAGTGGGACTTGCCTGAGGCTGTGCAGCGACTGGTGGAGC GGAGTGGGACTTGCCTGAGGCTGGGCAGCGACTGGTGGAGC < 41bp 0.375989236536813 0.764809017841133 0.057712346 0.24826378 prediction 0.529618035682265 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150479479 chr1:150479482 nonsynonymous SNV 0.685 3 24 hm5C_associated_SNPs_105751 0 0 1 0 1 Ribosome 0.50045880464685 0.500231643923948 0 0 hm5C_site_58896 DeepMRMD:0;iRNA_m5C:0 58897 chr2 11733133 11733133 1 + C G LUSC 11733129 + 11733109 11733149 41 TCATCGAGTGTGCTTACTCCCTGGCCGAGGGCCTCTCCGAG TCATCGAGTGTGCTTACTCCCTGGGCGAGGGCCTCTCCGAG < 41bp 0.547642047731587 0.812442902705952 0.1818994 0.84573615 prediction 0.52960170994873 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11733129 chr2:11733133 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_105752 0 0 1 0 0 Nucleus 0.500231643920018 0.500231643921092 0.6914723 2.14961382027923e-12 hm5C_site_58897 DeepMRMD:0.6914723;iRNA_m5C:2.14961382027923e-12 58898 chr11 31531364 31531364 1 + C G GBM 31531363 + 31531343 31531383 41 GGCAACCTGCGGTAGTGTTGCCGCGAGTACTGGGTCTGCAG GGCAACCTGCGGTAGTGTTGCGGCGAGTACTGGGTCTGCAG < 41bp 0.555151008012301 0.819949346771954 0.78860873 0.88800824 prediction 0.529596677519308 Functional Gain - ELP4 ENSG00000109911 CDS Human protein_coding chr11:31531363 chr11:31531364 synonymous SNV . 0 22 hm5C_associated_SNPs_105753 0 0 1 0 0 Nucleus 0.500231643931191 0.500231643921092 0.19879902 0 hm5C_site_58898 DeepMRMD:0.19879902;iRNA_m5C:0 58899 chr13 21720956 21720956 1 + C A rs4620 21720952 + 21720932 21720972 41 AAAAAAATCCAGGATGGATGCAACCTTGAAAGAACTGACAA AAAAAAATCCAGGATGGATGCAACATTGAAAGAACTGACAA < 41bp 0.367109937763293 0.764770298844271 0.033163935 0.07527909 prediction 0.529540597688542 Functional Gain - SAP18 ENSG00000150459 CDS Human protein_coding chr13:21720952 chr13:21720956 synonymous SNV . 0 25 hm5C_associated_SNPs_105754 0 0 1 0 1 Cytosol 0.500231643921457 0.500231643921093 0 0 hm5C_site_58899 DeepMRMD:0;iRNA_m5C:0 58900 chrX 24383090 24383090 1 + C A LIHC 24383086 + 24383066 24383106 41 TAGGTTTGAGCACGCAAGGGCAGGCCTTCCCTGCTCAGCAA TAGGTTTGAGCACGCAAGGGCAGGACTTCCCTGCTCAGCAA < 41bp 0.61557841619959 0.880344147385021 0.34307897 0.49930006 prediction 0.529531462370861 Functional Gain - SUPT20HL1 ENSG00000223731 ncRNA_exonic Human processed_pseudogene chrX:24383086 chrX:24383090 . . 0 25 hm5C_associated_SNPs_105755 0 0 0 0 0 unknown 0.500231643921087 0.500231643921092 0 1.11022302462516e-14 hm5C_site_58900 DeepMRMD:0;iRNA_m5C:1.11022302462516e-14 58901 chr14 105289037 105289037 1 + C G rs548542930 105289036 + 105289016 105289056 41 TGTTAAGGGGTGCAGTCTCCCCGCTGCAACCATTCCACCAG TGTTAAGGGGTGCAGTCTCCCGGCTGCAACCATTCCACCAG < 41bp 0.516671251985493 0.781432147626315 0.06753451 0.7773202 prediction 0.529521791281643 Functional Gain - LINC00638 ENSG00000258701 ncRNA_exonic Human lincRNA chr14:105289036 chr14:105289037 . . 0 22 hm5C_associated_SNPs_105756 0 0 0 0 0 unknown 0.500231643929071 0.500231643926411 0.5546404 0 hm5C_site_58901 DeepMRMD:0.5546404;iRNA_m5C:0 58902 chr1 118494980 118494980 1 + T C GBM 118494978 + 118494958 118494998 41 TCTTCACTGCCGGAAAAGATCATAAGATTAAACAGTGGGAT TCTTCACTGCCGGAAAAGATCACAAGATTAAACAGTGGGAT < 41bp 0.503053810269068 0.767810120432668 0.1533575 0.12773448 prediction 0.529512620327201 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118494978 chr1:118494980 synonymous SNV . 0 23 hm5C_associated_SNPs_105757 0 0 1 0 1 Nucleus 0.500234893969609 0.500369085166778 0 0.000268382394338573 hm5C_site_58902 DeepMRMD:0;iRNA_m5C:0.000268382394338573 58903 chr19 7743399 7743399 1 + C A rs144579994 7743395 + 7743375 7743415 41 AGTCTCAAACTCCGTACAAGCATGCGAAGAGAGACAGAAGA AGTCTCAAACTCCGTACAAGCATGAGAAGAGAGACAGAAGA < 41bp 0.374119375631899 0.764751802300096 0.21586737 0.36159807 prediction 0.529503604600193 Functional Gain - MCEMP1 ENSG00000183019;ENSG00000269711 CDS Human other chr19:7743395 chr19:7743399 stopgain 0.000 0 25 hm5C_associated_SNPs_105758 0 0 0 0 2 Endoplasmic reticulum 0.50022868809061 0.500223962715519 0 0 hm5C_site_58903 DeepMRMD:0;iRNA_m5C:0 58904 chr11 70450215 70450215 1 + T G rs7938947 70450213 + 70450193 70450233 41 CGGTGCCTTGGAGGGAGCAGCCTGGAGGGAGGGACAGCCCC CGGTGCCTTGGAGGGAGCAGCCGGGAGGGAGGGACAGCCCC < 41bp 0.422745564151043 0.7647403417369 0.90815294 0.921244 prediction 0.529480683473799 Functional Gain - SHANK2 ENSG00000162105 intronic Human protein_coding chr11:70450213 chr11:70450215 . . 0 23 hm5C_associated_SNPs_105759 0 0 0 0 0 cytosol 0.500231643920405 0.500231643747893 0.0261821199999999 0 hm5C_site_58904 DeepMRMD:0.0261821199999999;iRNA_m5C:0 58905 chr10 45430393 45430393 1 + C A UCEC 45430389 + 45430369 45430409 41 GATGGAGCTGAGCCTGGAGCCAGCCGACTCCCTGGCCAAGA GATGGAGCTGAGCCTGGAGCCAGCAGACTCCCTGGCCAAGA < 41bp 0.649488386033417 0.914205500706132 0.38493702 0.6401631 prediction 0.529434229345431 Functional Gain - TMEM72 ENSG00000187783 CDS Human protein_coding chr10:45430389 chr10:45430393 synonymous SNV . 0 25 hm5C_associated_SNPs_105760 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643920983 0.2803262 0 hm5C_site_58905 DeepMRMD:0.2803262;iRNA_m5C:0 58906 chr15 41145767 41145767 1 + C A LUSC 41145763 + 41145743 41145783 41 CCAGCTGACAGTGACTAGCTCAGACCACCCAGAGGACACGG CCAGCTGACAGTGACTAGCTCAGAACACCCAGAGGACACGG < 41bp 0.360070804638071 0.764714245955816 0.20103651 0.23648232 prediction 0.529428491911633 Functional Gain - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41145763 chr15:41145767 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_105761 0 0 0 0 2 Ribosome 0.500231643921042 0.500231643921092 0 1.00364161426114e-13 hm5C_site_58906 DeepMRMD:0;iRNA_m5C:1.00364161426114e-13 58907 chr16 5061153 5061153 1 + C A rs199905767 5061149 + 5061129 5061169 41 CTGCTCCAGTGGCAAATGCACAGCCCCCCCAGCAGCGTGGC CTGCTCCAGTGGCAAATGCACAGCACCCCCAGCAGCGTGGC < 41bp 0.354398452128445 0.764712861462526 0.14681941 0.09610161 prediction 0.529425722925051 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5061149 chr16:5061153 nonsynonymous SNV 0.255 0 25 hm5C_associated_SNPs_105762 0 0 0 0 1 exosome 0.500231643921453 0.500231643921136 0 0 hm5C_site_58907 DeepMRMD:0;iRNA_m5C:0 58908 chr10 50818874 50818874 1 + C A rs8187735 50818870 + 50818850 50818890 41 GGCGCGGCGCTGCAGGAGCCCCGGCGGCAGAGGCGCCTGGT GGCGCGGCGCTGCAGGAGCCCCGGAGGCAGAGGCGCCTGGT < 41bp 0.627938843381362 0.89265164798006 0.9226134 0.9268615 prediction 0.529425609197396 Functional Gain - SLC18A3 ENSG00000187714 CDS Human protein_coding chr10:50818870 chr10:50818874 synonymous SNV . 0 25 hm5C_associated_SNPs_105763 0 0 0 0 0 exosome 0.500231643925087 0.500231643923589 0.00849619999999995 0 hm5C_site_58908 DeepMRMD:0.00849619999999995;iRNA_m5C:0 58909 chr4 77661393 77661393 1 + C G rs547875955 77661392 + 77661372 77661412 41 GGGAACCCAGGAGGGTTACCCCGGGGGCAGGCCCACCTGTG GGGAACCCAGGAGGGTTACCCGGGGGGCAGGCCCACCTGTG < 41bp 0.555488779685175 0.820191128310107 0.93871903 0.9413911 prediction 0.529404697249865 Functional Gain - SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77661392 chr4:77661393 synonymous SNV . 0 22 hm5C_associated_SNPs_105764 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.00534414000000005 0 hm5C_site_58909 DeepMRMD:0.00534414000000005;iRNA_m5C:0 58910 chr20 43118132 43118132 1 + T G UCEC 43118129 + 43118109 43118149 41 AGGGCCTGACCTCAGATGCACAGTGTGACGACTCCTTGCGA AGGGCCTGACCTCAGATGCACAGGGTGACGACTCCTTGCGA < 41bp 0.369487892176925 0.764700062094767 0.12247315 0.9112436 prediction 0.529400124189534 Functional Gain - TTPAL ENSG00000124120 CDS Human protein_coding chr20:43118129 chr20:43118132 nonsynonymous SNV 1.000 0 24 hm5C_associated_SNPs_105765 0 0 1 0 0 Ribosome 0.500231676286267 0.500231643921092 0.8224872 0 hm5C_site_58910 DeepMRMD:0.8224872;iRNA_m5C:0 58911 chr4 165723445 165723445 1 + T G rs150617759 165723442 + 165723422 165723462 41 TTGTCACCGAGGCTGGAGTGCAGTGGTGTAATCATAGCTCA TTGTCACCGAGGCTGGAGTGCAGGGGTGTAATCATAGCTCA < 41bp 0.526746394359923 0.791445603189179 0.19966444 0.8773284 prediction 0.529398417658512 Functional Gain - LINC01207 ENSG00000248771 ncRNA_exonic Human protein_coding chr4:165723442 chr4:165723445 . . 0 24 hm5C_associated_SNPs_105766 0 0 0 0 0 exosome 0.500231643921064 0.500231643921092 0.7546568 5.77315972805081e-14 hm5C_site_58911 DeepMRMD:0.7546568;iRNA_m5C:5.77315972805081e-14 58912 chr9 98229366 98229366 1 + C G rs2066837 98229365 + 98229345 98229385 41 GAAGCTGAACACGCAAAAGACCGAAAGGACGAGAGCCTCCC GAAGCTGAACACGCAAAAGACGGAAAGGACGAGAGCCTCCC < 41bp 0.559091153246088 0.82376871021555 0.15769497 0.30614346 prediction 0.529355113938925 Functional Gain - LOC100507346 ENSG00000185920 intronic Human protein_coding chr9:98229365 chr9:98229366 . . 0 22 hm5C_associated_SNPs_105767 0 0 0 0 0 unknown 0.500231642441011 0.500231643921093 0 2.96016344769612e-09 hm5C_site_58912 DeepMRMD:0;iRNA_m5C:2.96016344769612e-09 58913 chr1 248366520 248366520 1 + C G LUAD 248366519 + 248366499 248366539 41 GTCATGGTTCTCCTCATCTACCTGGACACCCAGCTCCACAC GTCATGGTTCTCCTCATCTACGTGGACACCCAGCTCCACAC < 41bp 0.56823677041676 0.83291386001984 0.09992215 0.14984104 prediction 0.529354179206161 Functional Gain - OR2M3 ENSG00000228198 CDS Human protein_coding chr1:248366519 chr1:248366520 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_105768 0 0 0 0 0 exosome 0.500231643816569 0.500231643565986 0 0 hm5C_site_58913 DeepMRMD:0;iRNA_m5C:0 58914 chr19 43922432 43922432 1 + T A LUSC 43922428 + 43922408 43922448 41 GTTTGTGAGGGAAGCGTGCCCACATCAGCTGCTCACTCAAC GTTTGTGAGGGAAGCGTGCCCACAACAGCTGCTCACTCAAC < 41bp 0.568985611151247 0.83366044076259 0.54223144 0.24636215 prediction 0.529349659222686 Functional Gain - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43922428 chr19:43922432 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105769 0 0 0 0 0 unknown 0.500231644119374 0.500231645178457 0 2.11816608697291e-09 hm5C_site_58914 DeepMRMD:0;iRNA_m5C:2.11816608697291e-09 58915 chr5 140589970 140589970 1 + C A LUAD 140589966 + 140589946 140589986 41 GCTGCTGCCGTCCCAGGACCCGCACCTGCCCCTCGCCTCCC GCTGCTGCCGTCCCAGGACCCGCAACTGCCCCTCGCCTCCC < 41bp 0.647567933703276 0.91223620946986 0.09351486 0.24960941 prediction 0.529336551533167 Functional Gain - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140589966 chr5:140589970 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_105770 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_58915 DeepMRMD:0;iRNA_m5C:0 58916 chr1 166819279 166819279 1 + T C UCEC 166819277 + 166819257 166819297 41 GTGAAGAACTCCATGGAAAGCATGAACACTGACATGGTGAT GTGAAGAACTCCATGGAAAGCACGAACACTGACATGGTGAT < 41bp 0.520791457591897 0.785457766326831 0.07127008 0.10339001 prediction 0.529332617469866 Functional Gain - POGK ENSG00000143157 CDS Human protein_coding chr1:166819277 chr1:166819279 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105771 0 0 1 0 0 Nucleus 0.500231643921121 0.500231643921104 0 0 hm5C_site_58916 DeepMRMD:0;iRNA_m5C:0 58917 chr11 32851487 32851487 1 + T A rs61889487 32851483 + 32851463 32851503 41 TCCTCCCGTCCTCCGTCGGCCGCCTCCCCGGACCGAGGCAG TCCTCCCGTCCTCCGTCGGCCGCCACCCCGGACCGAGGCAG < 41bp 0.526690538954882 0.79135347438619 0.06480053 0.0892033 prediction 0.529325870862617 Functional Gain - PRRG4 ENSG00000135378 upstream Human protein_coding chr11:32851483 chr11:32851487 . . 0 25 hm5C_associated_SNPs_105772 0 0 0 0 0 Ribosome 0.500231643921093 0.500231643921093 0 0 hm5C_site_58917 DeepMRMD:0;iRNA_m5C:0 58918 chr13 51825732 51825732 1 + C G OV 51825731 + 51825711 51825751 41 GCGTGGATCCACCCCGACCTCCCGCTGTTCCGGGTGTCCGA GCGTGGATCCACCCCGACCTCGCGCTGTTCCGGGTGTCCGA < 41bp 0.573426289565871 0.838075055159579 0.15501168 0.271258 prediction 0.529297531187416 Functional Gain - FAM124A ENSG00000150510 CDS Human protein_coding chr13:51825731 chr13:51825732 nonsynonymous SNV 0.126 1 22 hm5C_associated_SNPs_105773 0 0 0 0 0 exosome 0.500231643921195 0.500231643921155 0 0 hm5C_site_58918 DeepMRMD:0;iRNA_m5C:0 58919 chr7 142880675 142880675 1 + T G UCEC 142880673 + 142880653 142880693 41 GGTATCATTGCAAATGGTTTCATCATGGCTATACATGCAGC GGTATCATTGCAAATGGTTTCAGCATGGCTATACATGCAGC < 41bp 0.582105399970845 0.84675103451923 0.6699195 0.89166105 prediction 0.529291269096771 Functional Gain - TAS2R39 ENSG00000236398 CDS Human protein_coding chr7:142880673 chr7:142880675 nonsynonymous SNV 0.919 3 23 hm5C_associated_SNPs_105774 0 0 0 0 0 unknown 0.500231674415899 0.500250913195084 0.4434831 3.84775583697206e-05 hm5C_site_58919 DeepMRMD:0.4434831;iRNA_m5C:3.84775583697206e-05 58920 chrX 68725795 68725795 1 + C G rs141000146 68725794 + 68725774 68725814 41 CTGGACTGTAGCCTGGACACCCTGATGGGGGACCTGCTGGC CTGGACTGTAGCCTGGACACCGTGATGGGGGACCTGCTGGC < 41bp 0.563481436291055 0.828121363777692 0.08353314 0.31649482 prediction 0.529279854973273 Functional Gain - FAM155B ENSG00000130054 CDS Human protein_coding chrX:68725794 chrX:68725795 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_105775 0 0 1 0 0 exosome 0.500231643921092 0.500231633710656 0 0 hm5C_site_58920 DeepMRMD:0;iRNA_m5C:0 58921 chr16 10841095 10841095 1 + C A THCA 10841091 + 10841071 10841111 41 GTTGGGAAAAGCACATTCAGCGCCCACCTTGCCCATGGCCT GTTGGGAAAAGCACATTCAGCGCCAACCTTGCCCATGGCCT < 41bp 0.338407417094301 0.764639481511608 0.16670617 0.27456355 prediction 0.529278963023216 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10841091 chr16:10841095 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_105776 0 0 1 0 2 Ribosome 0.500231643904378 0.500231565332665 0 0 hm5C_site_58921 DeepMRMD:0;iRNA_m5C:0 58922 chr16 30406475 30406475 1 + C G rs541614500 30406471 + 30406451 30406491 41 GTCGGAGTGGCTGGCGCTGTCGGCCGGCCGGGGAGGTCGGC GTCGGAGTGGCTGGCGCTGTCGGCGGGCCGGGGAGGTCGGC < 41bp 0.536372942272286 0.801011572988098 0.87891793 0.91556394 prediction 0.529277261431625 Functional Gain - ZNF48 ENSG00000180035 CDS Human protein_coding chr16:30406471 chr16:30406475 synonymous SNV . 0 25 hm5C_associated_SNPs_105777 0 0 0 0 0 Ribosome 0.500231643921592 0.50023164722708 0.07329202 6.6109766549971e-09 hm5C_site_58922 DeepMRMD:0.07329202;iRNA_m5C:6.6109766549971e-09 58923 chr9 84606027 84606027 1 + C A COAD 84606023 + 84606003 84606043 41 CACCTTAGCTGACTTATTTTCACCCTCACCACTGAGGGACC CACCTTAGCTGACTTATTTTCACCATCACCACTGAGGGACC < 41bp 0.354434197723533 0.764633144560995 0.2277303 0.11774206 prediction 0.529266289121991 Functional Gain - SPATA31D1 ENSG00000214929 CDS Human protein_coding chr9:84606023 chr9:84606027 synonymous SNV . 0 25 hm5C_associated_SNPs_105778 0 0 0 0 0 exosome 0.500231643921064 0.500231643921093 0 5.75095526755831e-14 hm5C_site_58923 DeepMRMD:0;iRNA_m5C:5.75095526755831e-14 58924 chr14 62541935 62541935 1 + C T SKCM 62541934 + 62541914 62541954 41 CATCCCTGCTCACTCACAGTCCCCATGTGAAAGAGGGGATG CATCCCTGCTCACTCACAGTCTCCATGTGAAAGAGGGGATG < 41bp 0.500767803404345 0.76538341798133 0.07328594 0.9447619 prediction 0.529231229153969 Functional Gain - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62541934 chr14:62541935 synonymous SNV . 0 22 hm5C_associated_SNPs_105779 0 0 0 0 1 exosome 0.500231643921767 0.500231646182664 0.8895238 4.52179538257269e-09 hm5C_site_58924 DeepMRMD:0.8895238;iRNA_m5C:4.52179538257269e-09 58925 chr1 110082551 110082551 1 + T A rs41279738 110082547 + 110082527 110082567 41 CATCAGCTGAGAGGAGCTATCACATGGGAGCCGGGACTGCT CATCAGCTGAGAGGAGCTATCACAAGGGAGCCGGGACTGCT < 41bp 0.540901781382467 0.805511633773924 0.4009999 0.59915376 prediction 0.529219704782913 Functional Gain - GPR61 ENSG00000254942 ncRNA_exonic Human antisense chr1:110082547 chr1:110082551 . . 0 25 hm5C_associated_SNPs_105780 0 1 1 0 1 exosome 0.500231643921603 0.500231643437841 0.19830752 0 hm5C_site_58925 DeepMRMD:0.19830752;iRNA_m5C:0 58926 chr5 50091025 50091025 1 + T C STAD 50091023 + 50091003 50091043 41 CGATGTGAGCACAACACAAACTTGAAGCCCCATAAACTGTT CGATGTGAGCACAACACAAACTCGAAGCCCCATAAACTGTT < 41bp 0.482252389787038 0.764607841103543 0.042228132 0.4838483 prediction 0.529215682207086 Functional Gain - PARP8 ENSG00000151883 CDS Human protein_coding chr5:50091023 chr5:50091025 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_105781 0 0 1 0 0 Nucleus 0.500231643769397 0.500231643920699 0 3.02604385993277e-10 hm5C_site_58926 DeepMRMD:0;iRNA_m5C:3.02604385993277e-10 58927 chr20 54824557 54824557 1 + C A rs61735259 54824553 + 54824533 54824573 41 CTCTTTGCGCGGCTGCACGTCAAGCGCATAGCAGCACTGCC CTCTTTGCGCGGCTGCACGTCAAGAGCATAGCAGCACTGCC < 41bp 0.635993512995384 0.900600497635403 0.52398545 0.5761098 prediction 0.529213969280039 Functional Gain - MC3R ENSG00000124089 CDS Human protein_coding chr20:54824553 chr20:54824557 nonsynonymous SNV 0.985 2 25 hm5C_associated_SNPs_105782 0 0 0 0 0 unknown 0.500231648264509 0.500231653602941 0.1042487 1.06768627272658e-08 hm5C_site_58927 DeepMRMD:0.1042487;iRNA_m5C:1.06768627272658e-08 58928 chr4 71628266 71628266 1 + T C CESC 71628264 + 71628244 71628284 41 TATCTCATGGCTAATGAACGCATGAACCTCATGAACATGGC TATCTCATGGCTAATGAACGCACGAACCTCATGAACATGGC < 41bp 0.531020671544052 0.795625858149691 0.37815738 0.34098113 prediction 0.529210373211277 Functional Gain - RUFY3 ENSG00000018189 CDS Human protein_coding chr4:71628264 chr4:71628266 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105783 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921093 0 8.88178419700125e-16 hm5C_site_58928 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 58929 chr5 170736729 170736729 1 + T G rs150863748 170736727 + 170736707 170736747 41 CCGTGCCCACGGTCTCCAGCCTTGGCGGTCTCAATTTCCCC CCGTGCCCACGGTCTCCAGCCTGGGCGGTCTCAATTTCCCC < 41bp 0.421369693777168 0.764599975987903 0.06537527 0.39942384 prediction 0.529199951975805 Functional Gain - TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736727 chr5:170736729 synonymous SNV . 0 23 hm5C_associated_SNPs_105784 0 0 0 0 1 exosome 0.500231643921093 0.500231643921129 0 7.28306304154103e-14 hm5C_site_58929 DeepMRMD:0;iRNA_m5C:7.28306304154103e-14 58930 chr1 231954127 231954127 1 + A T LUAD 231954131 - 231954111 231954151 41 TCCCTCCAGCCCTTCTCTCTCTGATGTTAATGATCTAATCT TCCCTCCAGCCCTTCTCTCTCTGAAGTTAATGATCTAATCT < 41bp 0.56597091796769 0.830568346869423 0.1277447 0.07773891 prediction 0.529194857803466 Functional Gain - DISC1 ENSG00000162946 CDS Human protein_coding chr1:231954131 chr1:231954127 synonymous SNV . 0 25 hm5C_associated_SNPs_105785 0 0 0 0 0 Nucleus 0.500231643921093 0.500231643857336 0 0 hm5C_site_58930 DeepMRMD:0;iRNA_m5C:0 58931 chrX 135592353 135592353 1 + C G LUAD 135592349 + 135592329 135592369 41 GTGGCCGTCAAATCACTGCCCAGGCATGGGATGGGACTACA GTGGCCGTCAAATCACTGCCCAGGGATGGGATGGGACTACA < 41bp 0.46976502046312 0.764589598944171 0.14455965 0.5966427 prediction 0.529179197888341 Functional Gain - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135592349 chrX:135592353 nonsynonymous SNV 0.981 0 25 hm5C_associated_SNPs_105786 0 0 1 0 1 Ribosome 0.50023164392123 0.500231643921091 0.1932854 0 hm5C_site_58931 DeepMRMD:0.1932854;iRNA_m5C:0 58932 chrX 37028054 37028054 1 + C A SKCM 37028050 + 37028030 37028070 41 AGACTGGAGTGTCCCATCTCCGCCCAGAGCCTCCCAAGATT AGACTGGAGTGTCCCATCTCCGCCAAGAGCCTCCCAAGATT < 41bp 0.349723161696916 0.76458171345686 0.17619988 0.24855247 prediction 0.529163426913719 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37028050 chrX:37028054 nonsynonymous SNV 0.018 1 25 hm5C_associated_SNPs_105787 0 0 0 0 0 unknown 0.500231643920797 0.500231642937313 0 0 hm5C_site_58932 DeepMRMD:0;iRNA_m5C:0 58933 chr6 89790771 89790771 1 + C A STAD 89790767 + 89790747 89790787 41 TCCCGGACCCCCGGGCACTGCCCCCGACCCTCTTCCTCCCT TCCCGGACCCCCGGGCACTGCCCCAGACCCTCTTCCTCCCT < 41bp 0.366838351673398 0.764565222790772 0.32726657 0.35241443 prediction 0.529130445581544 Functional Gain - PNRC1 ENSG00000146278 CDS Human protein_coding chr6:89790767 chr6:89790771 nonsynonymous SNV 0.952 2 25 hm5C_associated_SNPs_105788 0 0 1 0 0 Cytosol 0.500231887407247 0.500231643921111 0 0 hm5C_site_58933 DeepMRMD:0;iRNA_m5C:0 58934 chr4 84457880 84457880 1 + C G BLCA 84457879 + 84457859 84457899 41 CGGAGTGTCTCTGGGCATCTCCGAGATCTACATGAAGATCC CGGAGTGTCTCTGGGCATCTCGGAGATCTACATGAAGATCC < 41bp 0.575444776587703 0.840006140940871 0.38579592 0.91440976 prediction 0.529122728706336 Functional Gain - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84457879 chr4:84457880 synonymous SNV . 0 22 hm5C_associated_SNPs_105789 0 0 0 0 1 chromatin 0.500231571716357 0.500231643921975 0.82881952 1.44411234970221e-07 hm5C_site_58934 DeepMRMD:0.82881952;iRNA_m5C:1.44411234970221e-07 58935 chr1 42880516 42880516 1 + T A rs1055055 42880512 + 42880492 42880532 41 CATCAACAGTGGGTCTACCTCTAGTGAAAGTGAGCCTGAAC CATCAACAGTGGGTCTACCTCTAGAGAAAGTGAGCCTGAAC < 41bp 0.584816298627348 0.849373707028948 0.16987628 0.47310692 prediction 0.5291148168032 Functional Gain - RIMKLA ENSG00000177181 CDS Human protein_coding chr1:42880512 chr1:42880516 nonsynonymous SNV 0.899 3 25 hm5C_associated_SNPs_105790 0 1 1 0 0 Ribosome 0.500231643921469 0.500231643922071 0 1.20392584790352e-12 hm5C_site_58935 DeepMRMD:0;iRNA_m5C:1.20392584790352e-12 58936 chr6 88117779 88117779 1 + C A rs554840206 88117775 + 88117755 88117795 41 GGCCCCAGGACAGAAGCAGACAGACACGGCTCCTGCTGTCG GGCCCCAGGACAGAAGCAGACAGAAACGGCTCCTGCTGTCG < 41bp 0.556240456177947 0.820795620937326 0.0908829 0.103345245 prediction 0.529110329518758 Functional Gain - CFAP206 ENSG00000213204;ENSG00000272514 UTR5 Human other chr6:88117775 chr6:88117779 . . 0 25 hm5C_associated_SNPs_105791 0 0 0 0 1 Nucleus 0.500231643886224 0.500231646575116 0 5.37778288567381e-09 hm5C_site_58936 DeepMRMD:0;iRNA_m5C:5.37778288567381e-09 58937 chr15 79586361 79586361 1 + T C rs8038778 79586359 + 79586339 79586379 41 ATCTCAAAAGGGCCCGTTTGCCTCAACTGAAGAGGCTCCAG ATCTCAAAAGGGCCCGTTTGCCCCAACTGAAGAGGCTCCAG < 41bp 0.509358838018545 0.773906287502859 0.27464777 0.16782016 prediction 0.529094898968629 Functional Gain - ANKRD34C ENSG00000235711 CDS Human protein_coding chr15:79586359 chr15:79586361 synonymous SNV . 0 23 hm5C_associated_SNPs_105792 0 0 0 0 0 unknown 0.500231643918733 0.500231643921092 0 4.71933603307662e-12 hm5C_site_58937 DeepMRMD:0;iRNA_m5C:4.71933603307662e-12 58938 chr1 110038772 110038772 1 + T A rs114578308 110038768 + 110038748 110038788 41 ACTCAGTATGGTTCCAGGCCCAGATCAAAGGTGCGGCCTGG ACTCAGTATGGTTCCAGGCCCAGAACAAAGGTGCGGCCTGG < 41bp 0.555965794744876 0.820511017030685 0.2537682 0.5083179 prediction 0.529090444571617 Functional Gain - CYB561D1 ENSG00000174151 CDS Human protein_coding chr1:110038768 chr1:110038772 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_105793 0 0 1 0 0 Endoplasmic reticulum 0.500231643919732 0.500231703090901 0.0166358 1.1834233948349e-07 hm5C_site_58938 DeepMRMD:0.0166358;iRNA_m5C:1.1834233948349e-07 58939 chr19 33167237 33167237 1 + T A LIHC 33167233 + 33167213 33167253 41 AGACGACTGCGTGCTACCACCACCTGGTGCTGACCGTCGGT AGACGACTGCGTGCTACCACCACCAGGTGCTGACCGTCGGT < 41bp 0.586406639973455 0.850946609165016 0.4328857 0.49783757 prediction 0.529079938383123 Functional Gain - RGS9BP ENSG00000186326 CDS Human protein_coding chr19:33167233 chr19:33167237 nonsynonymous SNV 0.933 1 25 hm5C_associated_SNPs_105794 0 0 1 0 0 exosome 0.500231643921093 0.500231643921122 0 5.81756864903582e-14 hm5C_site_58939 DeepMRMD:0;iRNA_m5C:5.81756864903582e-14 58940 chr4 123342481 123342481 1 + T A rs191050990 123342477 + 123342457 123342497 41 GTAAGGCTGCAATGTTAAGTCGGTTTAACCTGCTTGCCAAA GTAAGGCTGCAATGTTAAGTCGGTATAACCTGCTTGCCAAA < 41bp 0.446973221446162 0.764529466811583 0.45997983 0.41260114 prediction 0.529058933623167 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123342477 chr4:123342481 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_105795 0 0 0 0 2 exosome 0.500231643915274 0.500231643918821 0 7.09454717195968e-12 hm5C_site_58940 DeepMRMD:0;iRNA_m5C:7.09454717195968e-12 58941 chr14 20528786 20528786 1 + C G LUSC 20528785 + 20528765 20528805 41 GCTTGCATTGAAACATACACCCTGGAATTATTTGTCATTGC GCTTGCATTGAAACATACACCGTGGAATTATTTGTCATTGC < 41bp 0.473213188242195 0.764524160203655 0.0063874125 0.036888897 prediction 0.529048320407309 Functional Gain - OR4L1 ENSG00000176246 CDS Human protein_coding chr14:20528785 chr14:20528786 nonsynonymous SNV 0.669 0 22 hm5C_associated_SNPs_105796 0 0 0 0 0 unknown 0.500231645314679 0.500231627266685 0 0 hm5C_site_58941 DeepMRMD:0;iRNA_m5C:0 58942 chr19 12921196 12921196 1 + T A rs62619782 12921192 + 12921172 12921212 41 GAAACTGCAGGACTTGGATACTGATTATGGCTCAGGCTACC GAAACTGCAGGACTTGGATACTGAATATGGCTCAGGCTACC < 41bp 0.440938105054559 0.76452136905639 0.14840609 0.3870543 prediction 0.529042738112781 Functional Gain - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12921192 chr19:12921196 nonsynonymous SNV 0.973 2 25 hm5C_associated_SNPs_105797 1 0 1 0 2 Ribosome 0.500231643920771 0.500231727657626 0 1.67473708678756e-07 hm5C_site_58942 DeepMRMD:0;iRNA_m5C:1.67473708678756e-07 Aicardi Goutieres syndrome Aicardi Goutieres syndrome 58943 chr1 111781398 111781398 1 + T C COAD 111781396 + 111781376 111781416 41 ATGCTGTGGGGTACTGGATACATAAGGGAATGCCATCAGAG ATGCTGTGGGGTACTGGATACACAAGGGAATGCCATCAGAG < 41bp 0.508530191638717 0.77302503126802 0.1040346 0.06310177 prediction 0.528989679258604 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111781396 chr1:111781398 synonymous SNV . 0 23 hm5C_associated_SNPs_105798 0 0 0 0 1 exosome 0.500231643921373 0.500231643928239 0 1.3731016323959e-11 hm5C_site_58943 DeepMRMD:0;iRNA_m5C:1.3731016323959e-11 58944 chr17 61886961 61886961 1 + T C KIRC 61886959 + 61886939 61886979 41 TGAAAAAGAAAGCTACCAATCTTCAAAGAGTCTCTTACCTT TGAAAAAGAAAGCTACCAATCTCCAAAGAGTCTCTTACCTT < 41bp 0.478613715808244 0.764488811355315 0.26108333 0.959252 prediction 0.52897762271063 Functional Gain - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61886959 chr17:61886961 synonymous SNV . 0 23 hm5C_associated_SNPs_105799 0 0 1 0 1 chromatin 0.500231567530439 0.500231644293975 0.918504 1.53527073054605e-07 hm5C_site_58944 DeepMRMD:0.918504;iRNA_m5C:1.53527073054605e-07 58945 chr5 33462080 33462080 1 + T A KIRC 33462076 + 33462056 33462096 41 GCAACCATCCAGCTGGATTTCCAGTTGCCCATCAGATTTAA GCAACCATCCAGCTGGATTTCCAGATGCCCATCAGATTTAA < 41bp 0.430226741156052 0.764487184439878 0.23590633 0.89377695 prediction 0.528974368879756 Functional Gain - TARS ENSG00000113407 CDS Human protein_coding chr5:33462076 chr5:33462080 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105800 0 0 1 0 2 Nucleus 0.500231644517823 0.500231644634612 0.7875539 2.33578045794047e-10 hm5C_site_58945 DeepMRMD:0.7875539;iRNA_m5C:2.33578045794047e-10 58946 chr19 22271703 22271703 1 + C A UCEC 22271699 + 22271679 22271719 41 AGTGTGGAAAAGCCTTTAACCGGTCTTCACACCTTACTAAA AGTGTGGAAAAGCCTTTAACCGGTATTCACACCTTACTAAA < 41bp 0.380317236337204 0.764486107307028 0.14316317 0.1292738 prediction 0.528972214614055 Functional Gain - ZNF257 ENSG00000197134 CDS Human protein_coding chr19:22271699 chr19:22271703 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105801 0 0 0 0 0 chromatin 0.500231643919787 0.500231643921092 0 2.61168864312822e-12 hm5C_site_58946 DeepMRMD:0;iRNA_m5C:2.61168864312822e-12 58947 chr22 24919646 24919646 1 + C A rs113975342 24919642 + 24919622 24919662 41 TATGTGGCAGCCCCTGACAGCAGCCGGACTCCTGGGCTGTC TATGTGGCAGCCCCTGACAGCAGCAGGACTCCTGGGCTGTC < 41bp 0.344661804216101 0.764477772563303 0.33543062 0.40628526 prediction 0.528955545126607 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919642 chr22:24919646 synonymous SNV . 0 25 hm5C_associated_SNPs_105802 2 0 0 0 2 exosome 0.500231847473274 0.500231715756864 0 0 hm5C_site_58947 DeepMRMD:0;iRNA_m5C:0 not provided not provided 58948 chr12 6562860 6562860 1 + C G LUSC 6562859 + 6562839 6562879 41 GCTGAACTTGCCACTGAGCCCCCAGGGGACTGTGCGAACTG GCTGAACTTGCCACTGAGCCCGCAGGGGACTGTGCGAACTG < 41bp 0.455838958207109 0.764473226937275 0.1325325 0.3198914 prediction 0.52894645387455 Functional Gain - TAPBPL ENSG00000139192 CDS Human protein_coding chr12:6562859 chr12:6562860 synonymous SNV . 0 22 hm5C_associated_SNPs_105803 0 0 0 0 1 chromatin 0.500231643923186 0.500231642202288 0 0 hm5C_site_58948 DeepMRMD:0;iRNA_m5C:0 58949 chr14 29237721 29237721 1 + C A LUAD 29237717 + 29237697 29237737 41 CTGCTCCGTCAACCTGCTCGCGGGCCAGACCAGTTACTTTT CTGCTCCGTCAACCTGCTCGCGGGACAGACCAGTTACTTTT < 41bp 0.641953345344238 0.906422257326841 0.83468455 0.94198817 prediction 0.528937823965206 Functional Gain - FOXG1 ENSG00000176165 CDS Human protein_coding chr14:29237717 chr14:29237721 synonymous SNV . 0 25 hm5C_associated_SNPs_105804 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0.21460724 1.11022302462516e-15 hm5C_site_58949 DeepMRMD:0.21460724;iRNA_m5C:1.11022302462516e-15 58950 chr7 92166627 92166627 1 + T A rs6951704 92166623 + 92166603 92166643 41 TTGGTCAGGCTGGTCTCGAACTCCTGACCTTGTGATACACC TTGGTCAGGCTGGTCTCGAACTCCAGACCTTGTGATACACC < 41bp 0.479212126765168 0.764467747780295 0.19882137 0.8974575 prediction 0.52893549556059 Functional Gain - RBM48 ENSG00000127993 UTR3 Human protein_coding chr7:92166623 chr7:92166627 . . 0 25 hm5C_associated_SNPs_105805 0 0 1 3 0 Nucleus 0.500231643920808 0.500231643323444 0.794915 0 hm5C_site_58950 DeepMRMD:0.794915;iRNA_m5C:0 58951 chr22 39078362 39078362 1 + T C COAD 39078360 + 39078340 39078380 41 CTGTCGGAGAGACTATGGGGCCTGACGGAGATGTTTCCGGA CTGTCGGAGAGACTATGGGGCCCGACGGAGATGTTTCCGGA < 41bp 0.505125799319525 0.769591369605911 0.12300384 0.08196348 prediction 0.528931140572774 Functional Gain - TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078360 chr22:39078362 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105806 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643920943 0 0 hm5C_site_58951 DeepMRMD:0;iRNA_m5C:0 58952 chr16 30012264 30012264 1 + C G rs138024392 30012263 + 30012243 30012283 41 TCTCCAGGAAGAGAAGCCCTCCGCTGGGGGGCGCCCCCTCT TCTCCAGGAAGAGAAGCCCTCGGCTGGGGGGCGCCCCCTCT < 41bp 0.454691916057667 0.764454526563413 0.41069052 0.8942504 prediction 0.528909053126827 Functional Gain - INO80E ENSG00000169592 CDS Human protein_coding chr16:30012263 chr16:30012264 nonsynonymous SNV 0.967 1 22 hm5C_associated_SNPs_105807 0 0 1 0 2 Cytosol 0.500231644153827 0.500231643921093 0.7885008 0 hm5C_site_58952 DeepMRMD:0.7885008;iRNA_m5C:0 58953 chr19 4233189 4233189 1 + C G LUSC 4233185 + 4233165 4233205 41 GCAGCAGACGCCAACGTCCACCAGCTGCACCATCACGGATG GCAGCAGACGCCAACGTCCACCAGGTGCACCATCACGGATG < 41bp 0.530047056303973 0.794501571282417 0.73066115 0.9189974 prediction 0.528909029956887 Functional Gain - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4233185 chr19:4233189 nonsynonymous SNV 0.172 0 25 hm5C_associated_SNPs_105808 0 0 0 0 1 Cytosol 0.500231656127118 0.500231643940405 0.3766725 0 hm5C_site_58953 DeepMRMD:0.3766725;iRNA_m5C:0 58954 chr15 23261774 23261774 1 + C A BLCA 23261770 + 23261750 23261790 41 CTTCCTTTCTCAGCTGAACCCTTGCCCCCGGAGCCCCCAGC CTTCCTTTCTCAGCTGAACCCTTGACCCCGGAGCCCCCAGC < 41bp 0.360578099698443 0.764454231144429 0.18637234 0.2964723 prediction 0.528908462288858 Functional Gain - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261770 chr15:23261774 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105809 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_58954 DeepMRMD:0;iRNA_m5C:0 58955 chr4 1389034 1389034 1 + C G rs527798572 1389033 + 1389013 1389053 41 GCCCGCCTGCTCACACGTGCCCATGTGGAGTGCCCGCCTGC GCCCGCCTGCTCACACGTGCCGATGTGGAGTGCCCGCCTGC < 41bp 0.474264406828716 0.764451838882411 0.017947674 0.032889515 prediction 0.528903677764822 Functional Gain - CRIPAK ENSG00000179979 CDS Human protein_coding chr4:1389033 chr4:1389034 synonymous SNV . 0 22 hm5C_associated_SNPs_105810 0 0 1 0 0 chromatin 0.500231463994787 0.500232012762946 0 1.09753631871712e-06 hm5C_site_58955 DeepMRMD:0;iRNA_m5C:1.09753631871712e-06 58956 chr1 236368452 236368452 1 + T C UCEC 236368450 + 236368430 236368470 41 ACCCTGGAATGGTCCCCAGCCATGGATTCAGTCCCAGATCT ACCCTGGAATGGTCCCCAGCCACGGATTCAGTCCCAGATCT < 41bp 0.516565241772716 0.781015674799602 0.17713737 0.15227231 prediction 0.528900866053773 Functional Gain - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236368450 chr1:236368452 synonymous SNV . 0 23 hm5C_associated_SNPs_105811 0 0 1 1 1 Ribosome 0.500231643790269 0.500231634943771 0 0 hm5C_site_58956 DeepMRMD:0;iRNA_m5C:0 58957 chr20 30602798 30602798 1 + C A UCEC 30602794 + 30602774 30602814 41 GCGTGAGCCGCCGGCCCCTGCACTCGATGCCCCTTTATCCC GCGTGAGCCGCCGGCCCCTGCACTAGATGCCCCTTTATCCC < 41bp 0.344433936832611 0.764446905584859 0.25569558 0.08471352 prediction 0.528893811169719 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602794 chr20:30602798 stopgain 0.886 1 25 hm5C_associated_SNPs_105812 0 0 0 0 2 exosome 0.500231643921084 0.500231643182582 0 0 hm5C_site_58957 DeepMRMD:0;iRNA_m5C:0 58958 chr17 656636 656636 1 + C G rs568462590 656632 + 656612 656652 41 ACGCGGCCAAAGTGGAGGAGCTGACGAAGAAGGAAGTGGGG ACGCGGCCAAAGTGGAGGAGCTGAGGAAGAAGGAAGTGGGG < 41bp 0.530758522979427 0.795197453061398 0.5014503 0.86410815 prediction 0.528877860163942 Functional Gain - DBIL5P ENSG00000231784 ncRNA_exonic Human transcribed_unitary_pseudogene chr17:656632 chr17:656636 . . 0 25 hm5C_associated_SNPs_105813 0 0 0 0 0 unknown 0.500231644136303 0.500231643870406 0.7253157 0 hm5C_site_58958 DeepMRMD:0.7253157;iRNA_m5C:0 58959 chr22 29688151 29688151 1 + T G COAD 29688149 + 29688129 29688169 41 CCATGGATGAAGGACCAGATCTTGATCTAGGTAATTTTGAA CCATGGATGAAGGACCAGATCTGGATCTAGGTAATTTTGAA < 41bp 0.451720245824195 0.76442338448965 0.18211159 0.26798028 prediction 0.5288467689793 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29688149 chr22:29688151 synonymous SNV . 0 23 hm5C_associated_SNPs_105814 0 0 1 0 2 Cytosol 0.500231643921093 0.500231643921078 0 0 hm5C_site_58959 DeepMRMD:0;iRNA_m5C:0 58960 chr4 16229072 16229072 1 + C G rs373330548 16229071 + 16229051 16229091 41 GGGGAAGGTGGAAACCTTTTCCCCGCTCCCCAAGTGATTGT GGGGAAGGTGGAAACCTTTTCGCCGCTCCCCAAGTGATTGT < 41bp 0.469847043635694 0.764419074500655 0.17486677 0.28721753 prediction 0.52883814900131 Functional Gain - TAPT1-AS1 ENSG00000263327 ncRNA_exonic Human antisense chr4:16229071 chr4:16229072 . . 0 22 hm5C_associated_SNPs_105815 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_58960 DeepMRMD:0;iRNA_m5C:0 Epithelial ovarian cancer 58961 chr1 153004983 153004983 1 + C G rs12195 153004982 + 153004962 153005002 41 GCCCTGCCACCCCAAAGTGCCCGAGCCCTGCCAGCCCAAGG GCCCTGCCACCCCAAAGTGCCGGAGCCCTGCCAGCCCAAGG < 41bp 0.584827269534954 0.849241724337995 0.16852432 0.8316614 prediction 0.528828909606081 Functional Gain - SPRR1B ENSG00000169469 CDS Human protein_coding chr1:153004982 chr1:153004983 synonymous SNV . 0 22 hm5C_associated_SNPs_105816 0 0 0 0 0 exosome 0.500231634668826 0.500231643921092 0.6633228 1.85045319067711e-08 hm5C_site_58961 DeepMRMD:0.6633228;iRNA_m5C:1.85045319067711e-08 58962 chr3 52444872 52444872 1 + C G rs566829817 52444871 + 52444851 52444891 41 CCCGGCCCTGCACTGGCCGCCCGGCAGGCGCGACATGAGCC CCCGGCCCTGCACTGGCCGCCGGGCAGGCGCGACATGAGCC < 41bp 0.466459453790507 0.764412012844165 0.13262671 0.7821351 prediction 0.528824025688331 Functional Gain - PHF7 ENSG00000010318 UTR5 Human protein_coding chr3:52444871 chr3:52444872 . . 0 22 hm5C_associated_SNPs_105817 0 0 1 0 0 cytosol 0.500231659994717 0.500231642369207 0.5642702 0 hm5C_site_58962 DeepMRMD:0.5642702;iRNA_m5C:0 58963 chr19 41758814 41758814 1 + T C STAD 41758812 + 41758792 41758832 41 CCTGTGGTCATCTTACCTTTCATGAAACATGGAGACCTACA CCTGTGGTCATCTTACCTTTCACGAAACATGGAGACCTACA < 41bp 0.477397148394443 0.764408937828974 0.08557576 0.08108854 prediction 0.528817875657949 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41758812 chr19:41758814 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105818 0 0 0 0 2 Nucleus 0.500231643952833 0.500231643928809 0 0 hm5C_site_58963 DeepMRMD:0;iRNA_m5C:0 58964 chr2 73452826 73452826 1 + T C STAD 73452824 + 73452804 73452844 41 CGCCACAGCCGCCACAAGATCCTCAGGTGCCAGCTGGGGAC CGCCACAGCCGCCACAAGATCCCCAGGTGCCAGCTGGGGAC < 41bp 0.486739049963533 0.764392896234256 0.10493052 0.21246082 prediction 0.528785792468512 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73452824 chr2:73452826 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_105819 0 0 1 2 2 Ribosome 0.500231643921121 0.500231643929355 0 1.64670499458452e-11 hm5C_site_58964 DeepMRMD:0;iRNA_m5C:1.64670499458452e-11 58965 chr3 183824114 183824114 1 + C A LUSC 183824110 + 183824090 183824130 41 AGGAAAATAAGGGCCCGGGTCTCACCCCCACCCACCTGCCC AGGAAAATAAGGGCCCGGGTCTCAACCCCACCCACCTGCCC < 41bp 0.35756956697233 0.764391626485646 0.15008256 0.20048538 prediction 0.528783252971293 Functional Gain - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183824110 chr3:183824114 nonsynonymous SNV 0.085 1 25 hm5C_associated_SNPs_105820 0 0 0 0 1 unknown 0.500231631684374 0.500231643921092 0 2.44734357224274e-08 hm5C_site_58965 DeepMRMD:0;iRNA_m5C:2.44734357224274e-08 58966 chr2 102626044 102626044 1 + T A BRCA 102626040 + 102626020 102626060 41 TCAGGGGCTGCCAGAAGCTGCCGGTTTCGTGGGAGGCATTA TCAGGGGCTGCCAGAAGCTGCCGGATTCGTGGGAGGCATTA < 41bp 0.566333485674803 0.830724856049362 0.8827021 0.9053315 prediction 0.528782740749118 Functional Gain - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102626040 chr2:102626044 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_105821 0 0 0 0 1 Endoplasmic reticulum 0.500231643911903 0.500231643948255 0.0452587999999998 7.27045090798129e-11 hm5C_site_58966 DeepMRMD:0.0452587999999998;iRNA_m5C:7.27045090798129e-11 58967 chr4 176987099 176987099 1 + C A rs1825234 176987095 + 176987075 176987115 41 GAGCCCGCGGGCCCGGCCGCCCCGCCCCCGGGCGCCCTGAG GAGCCCGCGGGCCCGGCCGCCCCGACCCCGGGCGCCCTGAG < 41bp 0.585503639445452 0.849882126201644 0.13199705 0.15418455 prediction 0.528756973512383 Functional Gain - WDR17 ENSG00000150627 UTR5 Human protein_coding chr4:176987095 chr4:176987099 . . 0 25 hm5C_associated_SNPs_105822 0 0 0 0 0 exosome 0.500231833685221 0.500231647944099 0 0 hm5C_site_58967 DeepMRMD:0;iRNA_m5C:0 58968 chr15 25462398 25462398 1 + C G rs138778105 25462397 + 25462377 25462417 41 AGATGTGTGGGACCCGCAGGCCGAGGGCCAGTGTCTCTCAG AGATGTGTGGGACCCGCAGGCGGAGGGCCAGTGTCTCTCAG < 41bp 0.478982233746949 0.764368890476961 0.89065266 0.9221419 prediction 0.528737780953922 Functional Gain - SNHG14 ENSG00000224078 ncRNA_exonic Human processed_transcript chr15:25462397 chr15:25462398 . . 0 22 hm5C_associated_SNPs_105823 0 0 0 0 2 unknown 0.500204262901836 0.500231643915705 0.0629784799999999 5.47620277373539e-05 hm5C_site_58968 DeepMRMD:0.0629784799999999;iRNA_m5C:5.47620277373539e-05 58969 chr7 89859252 89859252 1 + T A OV 89859248 + 89859228 89859268 41 TGGAGAATTGAAATGTATATCTCCTTTGGCATAATGAGCCT TGGAGAATTGAAATGTATATCTCCATTGGCATAATGAGCCT < 41bp 0.609344901324187 0.873710382650069 0.4360374 0.96682405 prediction 0.528730962651764 Functional Gain - STEAP2 ENSG00000157214 CDS Human protein_coding chr7:89859248 chr7:89859252 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_105824 0 0 0 0 2 Nucleus 0.500231708234623 0.500231647939604 0.9336481 0 hm5C_site_58969 DeepMRMD:0.9336481;iRNA_m5C:0 58970 chr1 45793415 45793415 1 + C A STAD 45793411 + 45793391 45793431 41 CTGAGCCCAGGTGAGGATCCCGAGCTGGGCCTCGAAATGAC CTGAGCCCAGGTGAGGATCCCGAGATGGGCCTCGAAATGAC < 41bp 0.64111268938169 0.905477971526537 0.8234277 0.90610325 prediction 0.528730564289694 Functional Gain - HPDL ENSG00000186603 CDS Human protein_coding chr1:45793411 chr1:45793415 nonsynonymous SNV 0.945 0 25 hm5C_associated_SNPs_105825 0 0 1 0 0 exosome 0.500231643910239 0.500231643917252 0.1653511 1.40254474700896e-11 hm5C_site_58970 DeepMRMD:0.1653511;iRNA_m5C:1.40254474700896e-11 58971 chr2 98349621 98349621 1 + C G LGG 98349617 + 98349597 98349637 41 TATCTGAAGCTGAAGGCGGACGGGCTCATCTACTGCCTGAA TATCTGAAGCTGAAGGCGGACGGGGTCATCTACTGCCTGAA < 41bp 0.547268205244102 0.811631942565886 0.8546208 0.9086462 prediction 0.528727474643569 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98349617 chr2:98349621 nonsynonymous SNV 0.911 4 25 hm5C_associated_SNPs_105826 0 0 1 0 2 exosome 0.500231643922546 0.500231643921092 0.1080508 0 hm5C_site_58971 DeepMRMD:0.1080508;iRNA_m5C:0 58972 chr10 115657951 115657951 1 + C G OV 115657947 + 115657927 115657967 41 ATGGGCACTCCTGCTGGACTCTGGCAAACTGCCAAAGAAAA ATGGGCACTCCTGCTGGACTCTGGGAAACTGCCAAAGAAAA < 41bp 0.490526617288794 0.764363538680856 0.07086137 0.23353514 prediction 0.528727077361711 Functional Gain - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115657947 chr10:115657951 synonymous SNV . 0 25 hm5C_associated_SNPs_105827 0 0 1 0 2 Nucleus 0.500231642082646 0.500231643920985 0 3.67667674083805e-09 hm5C_site_58972 DeepMRMD:0;iRNA_m5C:3.67667674083805e-09 58973 chr12 7031945 7031945 1 + T C UCEC 7031943 + 7031923 7031963 41 GCTTTGCCGGACATAACTTCCGTAATCCCAGTGTGCTGTGA GCTTTGCCGGACATAACTTCCGCAATCCCAGTGTGCTGTGA < 41bp 0.506012120647015 0.770371808011658 0.45634666 0.30449823 prediction 0.528719374729287 Functional Gain - ENO2 ENSG00000111674 CDS Human protein_coding chr12:7031943 chr12:7031945 synonymous SNV . 0 23 hm5C_associated_SNPs_105828 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_58973 DeepMRMD:0;iRNA_m5C:0 58974 chr6 109575765 109575765 1 + C G rs140450056 109575761 + 109575741 109575781 41 CGACGCCCGAGGTTTGATCTCAGCCACCCCTATTTCATTAA CGACGCCCGAGGTTTGATCTCAGCGACCCCTATTTCATTAA < 41bp 0.557420927213551 0.821763293160257 0.21564877 0.59646404 prediction 0.52868473189341 Functional Gain - C6orf183 ENSG00000243587;ENSG00000233908 intergenic Human other chr6:109575761 chr6:109575765 . . 0 25 hm5C_associated_SNPs_105829 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.19292808 0 hm5C_site_58974 DeepMRMD:0.19292808;iRNA_m5C:0 58975 chr5 132150484 132150484 1 + C G rs374565904 132150483 + 132150463 132150503 41 GGCGGCTACACGCCGCTGCACCTGGCTGCACTGCACGGCCA GGCGGCTACACGCCGCTGCACGTGGCTGCACTGCACGGCCA < 41bp 0.569824640439133 0.834151209123463 0.77999073 0.9058062 prediction 0.528653137368661 Functional Gain - SOWAHA ENSG00000198944 CDS Human protein_coding chr5:132150483 chr5:132150484 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_105830 0 0 0 0 0 exosome 0.500231643427299 0.500231560542056 0.25163094 0 hm5C_site_58975 DeepMRMD:0.25163094;iRNA_m5C:0 58976 chr5 150175100 150175100 1 + T C LIHC 150175098 + 150175078 150175118 41 ATCATCCTGGCCACCATTGTCATCATGACCTCGTTGTTGCT ATCATCCTGGCCACCATTGTCACCATGACCTCGTTGTTGCT < 41bp 0.489969476914535 0.764323321572183 0.043800324 0.12045914 prediction 0.528646643144365 Functional Gain - SMIM3 ENSG00000256235 CDS Human protein_coding chr5:150175098 chr5:150175100 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_105831 0 0 1 1 0 chromatin 0.500231540308897 0.500228721696126 0 0 hm5C_site_58976 DeepMRMD:0;iRNA_m5C:0 58977 chr1 192335281 192335281 1 + T G rs147881080 192335278 + 192335258 192335298 41 AGGTAAAAGTTAACTAATCACTATACTTCAGGGCTACAATA AGGTAAAAGTTAACTAATCACTAGACTTCAGGGCTACAATA < 41bp 0.438963245169066 0.76432152219901 0.04310906 0.3001747 prediction 0.528643044398021 Functional Gain - RGS21 ENSG00000253148 UTR3 Human protein_coding chr1:192335278 chr1:192335281 . . 0 24 hm5C_associated_SNPs_105832 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_58977 DeepMRMD:0;iRNA_m5C:0 58978 chr11 550192 550192 1 + C A rs61736743 550188 + 550168 550208 41 GACCTGGGGCAGGTGCGCTACTTGCAGCTGTGCCCACGCCT GACCTGGGGCAGGTGCGCTACTTGAAGCTGTGCCCACGCCT < 41bp 0.34489202012879 0.764318465884665 0.19519237 0.23767692 prediction 0.528636931769329 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:550188 chr11:550192 nonsynonymous SNV 0.555 0 25 hm5C_associated_SNPs_105833 0 0 0 0 1 Nucleus 0.500231643869828 0.50023164395804 0 1.76424652664764e-10 hm5C_site_58978 DeepMRMD:0;iRNA_m5C:1.76424652664764e-10 58979 chr12 6559495 6559495 1 + C A HNSC 6559491 + 6559471 6559511 41 AGGCCCTGAGCCCACACCCTCAGCCCACCCACTTACCTTAT AGGCCCTGAGCCCACACCCTCAGCACACCCACTTACCTTAT < 41bp 0.348968441619666 0.764309394860643 0.87135863 0.7714267 prediction 0.528618789721287 Functional Gain - CD27 ENSG00000139193 CDS Human protein_coding chr12:6559491 chr12:6559495 nonsynonymous SNV 0.848 3 25 hm5C_associated_SNPs_105834 0 0 0 0 1 exosome 0.500231643921092 0.500231643921088 0 0 hm5C_site_58979 DeepMRMD:0;iRNA_m5C:0 58980 chr9 131271255 131271255 1 + C G ACC 131271251 + 131271231 131271271 41 ATATGCAGGAGAACCAACCTCTGTCTGAGACTTCGCCATCC ATATGCAGGAGAACCAACCTCTGTGTGAGACTTCGCCATCC < 41bp 0.469656154768443 0.764308996085315 0.32229975 0.41114902 prediction 0.52861799217063 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131271251 chr9:131271255 nonsynonymous SNV 0.058 1 25 hm5C_associated_SNPs_105835 0 0 1 0 0 Cytosol 0.500231622739282 0.500232057366807 0 8.6925505016211e-07 hm5C_site_58980 DeepMRMD:0;iRNA_m5C:8.6925505016211e-07 58981 chr9 137997487 137997487 1 + C G rs145868455 137997486 + 137997466 137997506 41 CGAGGTCCGGGCGCACTCACCCGCAGTCTTCCCCCACACGT CGAGGTCCGGGCGCACTCACCGGCAGTCTTCCCCCACACGT < 41bp 0.468304096380519 0.76430702787685 0.40201253 0.8976519 prediction 0.5286140557537 Functional Gain - OLFM1 ENSG00000130558 intronic Human protein_coding chr9:137997486 chr9:137997487 . . 0 22 hm5C_associated_SNPs_105836 0 0 0 0 0 Endoplasmic reticulum 0.500231643918266 0.500231643921093 0.7953038 5.65258950757652e-12 hm5C_site_58981 DeepMRMD:0.7953038;iRNA_m5C:5.65258950757652e-12 58982 chr12 72666957 72666957 1 + G C LUSC 72666958 - 72666938 72666978 41 GCGCAGCTGCGTCCACGGCTCCCACGGCTCCCGCTCCTCCT GCGCAGCTGCGTCCACGGCTCGCACGGCTCCCGCTCCTCCT < 41bp 0.512858886234379 0.777164967117012 0.039850175 0.11591521 prediction 0.528612161765266 Functional Gain - TRHDE ENSG00000072657 CDS Human protein_coding chr12:72666958 chr12:72666957 nonsynonymous SNV 0.370 0 22 hm5C_associated_SNPs_105837 0 0 0 0 0 exosome 0.500231643921026 0.500231643912333 0 0 hm5C_site_58982 DeepMRMD:0;iRNA_m5C:0 58983 chr11 60785395 60785395 1 + T G rs148566267 60785393 + 60785373 60785413 41 TCCCAAAAGCAAGCTGCCTCCATGGAACCCCCAGGTGTTTT TCCCAAAAGCAAGCTGCCTCCAGGGAACCCCCAGGTGTTTT < 41bp 0.412146225689932 0.764304319422861 0.104475915 0.5212257 prediction 0.528608638845722 Functional Gain - CD6 ENSG00000013725 CDS Human protein_coding chr11:60785393 chr11:60785395 nonsynonymous SNV 0.371 3 23 hm5C_associated_SNPs_105838 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0.0424514 0 hm5C_site_58983 DeepMRMD:0.0424514;iRNA_m5C:0 58984 chr3 45637439 45637439 1 + T A rs267236 45637435 + 45637415 45637455 41 TGCCCCGTCATCCTCGCCAGCTGGTCTGGACGGTTCACAGC TGCCCCGTCATCCTCGCCAGCTGGACTGGACGGTTCACAGC < 41bp 0.588429288858652 0.85273341088292 0.21021268 0.53176373 prediction 0.528608244048537 Functional Gain - LIMD1 ENSG00000144791 CDS Human protein_coding chr3:45637435 chr3:45637439 synonymous SNV . 0 25 hm5C_associated_SNPs_105839 0 0 1 0 0 Ribosome 0.500231643921093 0.50023164392266 0.06352746 3.13438164312174e-12 hm5C_site_58984 DeepMRMD:0.06352746;iRNA_m5C:3.13438164312174e-12 58985 chr6 111587184 111587184 1 + C A HNSC 111587180 + 111587160 111587200 41 GTGCCTTTTTGGCTCCACTGCTAGCTAAACTGGCTTTGGGT GTGCCTTTTTGGCTCCACTGCTAGATAAACTGGCTTTGGGT < 41bp 0.361130061666326 0.764300603743796 0.50689214 0.4706436 prediction 0.528601207487593 Functional Gain - MFSD4B ENSG00000173214 CDS Human protein_coding chr6:111587180 chr6:111587184 nonsynonymous SNV 0.408 4 25 hm5C_associated_SNPs_105840 0 0 1 0 0 Nucleus 0.500231643921093 0.500231643921092 0 0 hm5C_site_58985 DeepMRMD:0;iRNA_m5C:0 58986 chr16 56966192 56966192 1 + C G CESC 56966188 + 56966168 56966208 41 GACCGAACCCGAGCCCGTCACGCTCCTGGTGAAGAGCCCCA GACCGAACCCGAGCCCGTCACGCTGCTGGTGAAGAGCCCCA < 41bp 0.515590001257027 0.779890282097351 0.23820964 0.30578104 prediction 0.528600561680649 Functional Gain - HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56966188 chr16:56966192 synonymous SNV . 0 25 hm5C_associated_SNPs_105841 0 0 1 0 0 Ribosome 0.500231643758095 0.500231637804105 0 0 hm5C_site_58986 DeepMRMD:0;iRNA_m5C:0 58987 chr7 100609871 100609871 1 + C A UCEC 100609867 + 100609847 100609887 41 GGAAGTCGTGGGCACTTTTTCAAACTGGGGTTTCGAGGACG GGAAGTCGTGGGCACTTTTTCAAAATGGGGTTTCGAGGACG < 41bp 0.386795997221295 0.764296081166681 0.8865952 0.8764402 prediction 0.528592162333362 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100609867 chr7:100609871 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105842 0 0 0 0 2 exosome 0.500231652288137 0.500231794219459 0 2.83862642058708e-07 hm5C_site_58987 DeepMRMD:0;iRNA_m5C:2.83862642058708e-07 58988 chr2 215440491 215440491 1 + T A LUAD 215440487 + 215440467 215440507 41 TGTCATTGTCACAACGGGGACTGGTGGAAGCCTGCTCAGTG TGTCATTGTCACAACGGGGACTGGAGGAAGCCTGCTCAGTG < 41bp 0.58271469304381 0.84700760390033 0.3664017 0.40038392 prediction 0.528585821713041 Functional Gain - VWC2L ENSG00000174453 CDS Human protein_coding chr2:215440487 chr2:215440491 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_105843 0 0 0 2 1 cytosol 0.500231634902966 0.500231628915321 0 0 hm5C_site_58988 DeepMRMD:0;iRNA_m5C:0 58989 chr14 74823592 74823592 1 + C G STAD 74823588 + 74823568 74823608 41 ATAGGTGCTTCCTTGGAGGCCAAGCAGGTCCTGTCTTCCTT ATAGGTGCTTCCTTGGAGGCCAAGGAGGTCCTGTCTTCCTT < 41bp 0.480046130458709 0.76428700745925 0.4221648 0.8378148 prediction 0.528574014918501 Functional Gain - VRTN ENSG00000133980 CDS Human protein_coding chr14:74823588 chr14:74823592 nonsynonymous SNV 0.915 1 25 hm5C_associated_SNPs_105844 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.6756296 0 hm5C_site_58989 DeepMRMD:0.6756296;iRNA_m5C:0 58990 chr14 77857396 77857396 1 + T G PAAD 77857394 + 77857374 77857414 41 GCTCCTGGAAATTGAAGAGCCATTATTCAAACGCTCCATCA GCTCCTGGAAATTGAAGAGCCAGTATTCAAACGCTCCATCA < 41bp 0.434755467224202 0.764284620625455 0.91644067 0.91012025 prediction 0.52856924125091 Functional Gain - SAMD15 ENSG00000100583 CDS Human protein_coding chr14:77857394 chr14:77857396 nonsynonymous SNV 0.833 0 23 hm5C_associated_SNPs_105845 0 0 0 0 1 exosome 0.500241309156646 0.500231643075322 0 0 hm5C_site_58990 DeepMRMD:0;iRNA_m5C:0 58991 chr18 67992064 67992064 1 + T A LUSC 67992060 + 67992040 67992080 41 TGCTATGGTAAAGATATGGCCAGCTGCGATATCAACGGTGA TGCTATGGTAAAGATATGGCCAGCAGCGATATCAACGGTGA < 41bp 0.461263092377522 0.764280428467984 0.40761328 0.2736351 prediction 0.528560856935969 Functional Gain - SOCS6 ENSG00000170677 CDS Human protein_coding chr18:67992060 chr18:67992064 nonsynonymous SNV 0.920 1 25 hm5C_associated_SNPs_105846 0 0 0 0 0 Ribosome 0.500231643921209 0.500231643912641 0 0 hm5C_site_58991 DeepMRMD:0;iRNA_m5C:0 58992 chr11 73681103 73681103 1 + C T SKCM 73681102 + 73681082 73681122 41 ATCTTCTTCGACATCCAGTTCCCCACCCGCCTCACACCCCA ATCTTCTTCGACATCCAGTTCTCCACCCGCCTCACACCCCA < 41bp 0.496780933527615 0.764272981285751 0.021033466 0.91406715 prediction 0.528545962571502 Functional Gain - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73681102 chr11:73681103 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_105847 0 0 0 0 1 exosome 0.500231643921092 0.500231643921061 0.8281343 0 hm5C_site_58992 DeepMRMD:0.8281343;iRNA_m5C:0 58993 chr17 34070252 34070252 1 + C A rs73990295 34070248 + 34070228 34070268 41 TGAAGGATGGCAGCATCTCACATGCCCCATCACCAACTCTG TGAAGGATGGCAGCATCTCACATGACCCATCACCAACTCTG < 41bp 0.442800488942999 0.764272248447938 0.36350298 0.37284964 prediction 0.528544496895875 Functional Gain - RASL10B ENSG00000141150 UTR3 Human other chr17:34070248 chr17:34070252 . . 0 25 hm5C_associated_SNPs_105848 0 0 1 0 0 insoluble cytoplasm 0.500231643859592 0.500231644716001 0 1.71281899774556e-09 hm5C_site_58993 DeepMRMD:0;iRNA_m5C:1.71281899774556e-09 58994 chr12 107712246 107712246 1 + C G rs547139410 107712242 + 107712222 107712262 41 TGCTGCGCTCCGGTGCAGGGCAGGCTGGCGCCGAGCGAACC TGCTGCGCTCCGGTGCAGGGCAGGGTGGCGCCGAGCGAACC < 41bp 0.493429431398368 0.764258798570748 0.7960012 0.89536095 prediction 0.528517597141496 Functional Gain - BTBD11 ENSG00000151136 UTR5 Human protein_coding chr12:107712242 chr12:107712246 . . 0 25 hm5C_associated_SNPs_105849 0 0 1 0 0 cytosol 0.500231643921048 0.50023164392731 0.1987195 1.2525536163821e-11 hm5C_site_58994 DeepMRMD:0.1987195;iRNA_m5C:1.2525536163821e-11 58995 chr4 71066250 71066250 1 + T G OV 71066248 + 71066228 71066268 41 TCCAGTTTACATGGTCCTACCCTGGGAACAACCTCAGCAAA TCCAGTTTACATGGTCCTACCCGGGGAACAACCTCAGCAAA < 41bp 0.4204835527757 0.764239859180366 0.14021629 0.925274 prediction 0.528479718360732 Functional Gain - ODAM ENSG00000109205 CDS Human protein_coding chr4:71066248 chr4:71066250 nonsynonymous SNV 0.985 2 23 hm5C_associated_SNPs_105850 0 0 1 0 2 exosome 0.500231643921043 0.500231643921218 0.850548 3.49276163547074e-13 hm5C_site_58995 DeepMRMD:0.850548;iRNA_m5C:3.49276163547074e-13 58996 chr2 32891790 32891790 1 + T A UCEC 32891786 + 32891766 32891806 41 AAGGGAAGGGGATGTCCTTTCAAATTGTGAATTCACTCCAG AAGGGAAGGGGATGTCCTTTCAAAATGTGAATTCACTCCAG < 41bp 0.580108618292434 0.844324002363044 0.38068935 0.47001815 prediction 0.528430768141219 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32891786 chr2:32891790 nonsynonymous SNV 0.655 0 25 hm5C_associated_SNPs_105851 0 0 1 0 1 Nucleus 0.500231643088186 0.500231643996151 0 1.81593073911301e-09 hm5C_site_58996 DeepMRMD:0;iRNA_m5C:1.81593073911301e-09 58997 chr17 48050587 48050587 1 + C A SARC 48050583 + 48050563 48050603 41 AGCACACGCAGTACCTGGCGCTGCCCGAGAGGGCCCAGCTG AGCACACGCAGTACCTGGCGCTGCACGAGAGGGCCCAGCTG < 41bp 0.339307810832092 0.764180838139602 0.15430856 0.2532493 prediction 0.528361676279205 Functional Gain - DLX4 ENSG00000108813 CDS Human protein_coding chr17:48050583 chr17:48050587 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_105852 0 0 0 0 1 Cytosol 0.500231642302885 0.500231326018305 0 0 hm5C_site_58997 DeepMRMD:0;iRNA_m5C:0 58998 chr11 134147681 134147681 1 + C A rs191037370 134147677 + 134147657 134147697 41 AAGCACAGGTCGGGGTAAGCCCCACTTCACACTGGAGGGCC AAGCACAGGTCGGGGTAAGCCCCAATTCACACTGGAGGGCC < 41bp 0.341694169433817 0.764176933838252 0.2063779 0.117486775 prediction 0.528353867676504 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134147677 chr11:134147681 nonsynonymous SNV 0.198 1 25 hm5C_associated_SNPs_105853 0 0 0 0 1 Nucleus 0.500231646209115 0.500231643921092 0 0 hm5C_site_58998 DeepMRMD:0;iRNA_m5C:0 58999 chr17 1675210 1675210 1 + T C HNSC 1675208 + 1675188 1675228 41 TGTGGCACCTCTGGAAAAGTCATATGGGACCAGGCCCAGAG TGTGGCACCTCTGGAAAAGTCACATGGGACCAGGCCCAGAG < 41bp 0.502497203587321 0.766638913288779 0.23028195 0.24208137 prediction 0.528283419402916 Functional Gain - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1675208 chr17:1675210 nonsynonymous SNV 0.825 5 23 hm5C_associated_SNPs_105854 0 0 1 0 1 cytosol 0.500231642051858 0.500231643920925 0 3.73813291432157e-09 hm5C_site_58999 DeepMRMD:0;iRNA_m5C:3.73813291432157e-09 59000 chr1 226026489 226026489 1 + C G PCPG 226026488 + 226026468 226026508 41 ATCATCCCACTCCTGACTGACCCCAAGAACCATGGCCTGAG ATCATCCCACTCCTGACTGACGCCAAGAACCATGGCCTGAG < 41bp 0.44310903572734 0.764128014892019 0.031326205 0.18392575 prediction 0.528256029784038 Functional Gain - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226026488 chr1:226026489 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_105855 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921056 0 0 hm5C_site_59000 DeepMRMD:0;iRNA_m5C:0 59001 chr20 21312419 21312419 1 + T C UCEC 21312417 + 21312397 21312437 41 CTTGTTTAGCCCAGCCTAACCATGACCCAAATACTCATCAT CTTGTTTAGCCCAGCCTAACCACGACCCAAATACTCATCAT < 41bp 0.494324193679538 0.764123268551391 0.09182575 0.11150196 prediction 0.528246537102781 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21312417 chr20:21312419 synonymous SNV . 0 23 hm5C_associated_SNPs_105856 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59001 DeepMRMD:0;iRNA_m5C:0 59002 chr16 28592408 28592408 1 + C G LUSC 28592404 + 28592384 28592424 41 GTAGACAATGGCCCTCGTGTCTGCCGATTCCCGCATTGCAG GTAGACAATGGCCCTCGTGTCTGCGGATTCCCGCATTGCAG < 41bp 0.483029909426518 0.764123136831411 0.20835835 0.22806859 prediction 0.528246273662822 Functional Gain - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28592404 chr16:28592408 synonymous SNV . 0 25 hm5C_associated_SNPs_105857 0 0 1 0 2 chromatin 0.500234241250729 0.500232761133525 0 0 hm5C_site_59002 DeepMRMD:0;iRNA_m5C:0 59003 chr15 91503669 91503669 1 + C A SKCM 91503665 + 91503645 91503685 41 CCTTCCCGGCATTACTGGATCTCCCCATGGGCTCAGATGCA CCTTCCCGGCATTACTGGATCTCCACATGGGCTCAGATGCA < 41bp 0.321280447031091 0.764122316192715 0.035774678 0.9450819 prediction 0.528244632385429 Functional Gain - RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91503665 chr15:91503669 nonsynonymous SNV 0.820 3 25 hm5C_associated_SNPs_105858 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643933876 0.8901638 2.55668819448829e-11 hm5C_site_59003 DeepMRMD:0.8901638;iRNA_m5C:2.55668819448829e-11 59004 chr2 185803671 185803671 1 + C A STAD 185803667 + 185803647 185803687 41 CCGTTCTTCATCCTAGCCATCTGGCTTTCCCATCTTTACCC CCGTTCTTCATCCTAGCCATCTGGATTTCCCATCTTTACCC < 41bp 0.380343902484943 0.764111173227477 0.18424949 0.38905683 prediction 0.528222346454954 Functional Gain - ZNF804A ENSG00000170396 CDS Human protein_coding chr2:185803667 chr2:185803671 nonsynonymous SNV 0.047 3 25 hm5C_associated_SNPs_105859 0 0 0 0 0 nucleoplasm 0.500231635825539 0.500230331523905 0 0 hm5C_site_59004 DeepMRMD:0;iRNA_m5C:0 59005 chr2 241513949 241513949 1 + C A UCEC 241513945 + 241513925 241513965 41 CATCCAGGTGCTGCCTTCACCTGCCTGGAGACTGCCTTCCG CATCCAGGTGCTGCCTTCACCTGCATGGAGACTGCCTTCCG < 41bp 0.657805270479278 0.9219151855419 0.43563402 0.6395654 prediction 0.528219830125244 Functional Gain - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241513945 chr2:241513949 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_105860 0 0 1 0 2 chromatin 0.500231643921093 0.500231643934092 0.2791308 2.59985366568571e-11 hm5C_site_59005 DeepMRMD:0.2791308;iRNA_m5C:2.59985366568571e-11 59006 chr5 175110281 175110281 1 + C A rs17065306 175110277 + 175110257 175110297 41 CTCTTCCTTTTGCCTGGACTCTACCGCATGCAAGATCACCA CTCTTCCTTTTGCCTGGACTCTACAGCATGCAAGATCACCA < 41bp 0.356464530886702 0.764106891369973 0.060660034 0.3317009 prediction 0.528213782739947 Functional Gain - HRH2 ENSG00000113749 CDS Human protein_coding chr5:175110277 chr5:175110281 synonymous SNV . 0 25 hm5C_associated_SNPs_105861 0 0 0 0 0 nucleus 0.500231643865272 0.500231621471649 0 0 hm5C_site_59006 DeepMRMD:0;iRNA_m5C:0 59007 chr2 217498169 217498169 1 + C A rs528830011 217498165 + 217498145 217498185 41 GGAAGAAGCGGAGGAGGCGGCTCCCGCGCTCGCAGGGCCGT GGAAGAAGCGGAGGAGGCGGCTCCAGCGCTCGCAGGGCCGT < 41bp 0.624041234655393 0.888139048811207 0.46784526 0.8918741 prediction 0.528195628311628 Functional Gain - IGFBP2 ENSG00000115457 UTR5 Human protein_coding chr2:217498165 chr2:217498169 . . 0 25 hm5C_associated_SNPs_105862 0 0 1 0 0 Endoplasmic reticulum 0.500231643934285 0.500231672766727 0.7837482 5.76648835348692e-08 hm5C_site_59007 DeepMRMD:0.7837482;iRNA_m5C:5.76648835348692e-08 59008 chr20 31673913 31673913 1 + T A LUSC 31673909 + 31673889 31673929 41 TGGACCGCACGGGTTATCCTCGGCTGGTCATTGAGCGATGT TGGACCGCACGGGTTATCCTCGGCAGGTCATTGAGCGATGT < 41bp 0.599374243020355 0.863468056825424 0.3505005 0.49137324 prediction 0.528187627610137 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31673909 chr20:31673913 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_105863 0 0 0 0 1 exosome 0.500231643914858 0.500231643671066 0 0 hm5C_site_59008 DeepMRMD:0;iRNA_m5C:0 59009 chr12 64825398 64825398 1 + C A PRAD 64825394 + 64825374 64825414 41 AAGTTTATCTGGACTGTTTACAGACATTCTTGCCAGCCCTC AAGTTTATCTGGACTGTTTACAGAAATTCTTGCCAGCCCTC < 41bp 0.360917072871844 0.764091103100579 0.5122695 0.4178269 prediction 0.528182206201158 Functional Gain - XPOT ENSG00000184575 CDS Human protein_coding chr12:64825394 chr12:64825398 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_105864 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643822455 0 0 hm5C_site_59009 DeepMRMD:0;iRNA_m5C:0 59010 chr21 45094963 45094963 1 + T C UCEC 45094961 + 45094941 45094981 41 TGATGAAGGAGGTCCTGTGTCCTGAGAGTCAGTCTCCTAAT TGATGAAGGAGGTCCTGTGTCCCGAGAGTCAGTCTCCTAAT < 41bp 0.527785465419799 0.79187555756426 0.22412938 0.25688243 prediction 0.52818018428892 Functional Gain - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45094961 chr21:45094963 synonymous SNV . 0 23 hm5C_associated_SNPs_105865 0 0 1 0 2 Cytosol 0.500224217591925 0.50023148172885 0 1.45282738497343e-05 hm5C_site_59010 DeepMRMD:0;iRNA_m5C:1.45282738497343e-05 59011 chr13 49854797 49854797 1 + T C COAD 49854795 + 49854775 49854815 41 AAGAAGGCAGACATCTCTTACATGAGGTTCGGGGAGCTTGA AAGAAGGCAGACATCTCTTACACGAGGTTCGGGGAGCTTGA < 41bp 0.5094992489426 0.773588783144715 0.7142871 0.7583307 prediction 0.52817906840423 Functional Gain - CDADC1 ENSG00000102543 CDS Human protein_coding chr13:49854795 chr13:49854797 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_105866 0 0 1 0 1 Endoplasmic reticulum 0.500231656020676 0.500231652255312 0.0880872000000001 0 hm5C_site_59011 DeepMRMD:0.0880872000000001;iRNA_m5C:0 59012 chr16 25078284 25078284 1 + C G rs144241125 25078280 + 25078260 25078300 41 GCGGTGGGAGCAGCGCTCGTCCGCCGTTGGGGCCCCCAGCC GCGGTGGGAGCAGCGCTCGTCCGCGGTTGGGGCCCCCAGCC < 41bp 0.538374796622965 0.802436429146925 0.4044035 0.8839608 prediction 0.52812326504792 Functional Gain - LINC02175 ENSG00000262155 ncRNA_exonic Human lincRNA chr16:25078280 chr16:25078284 . . 0 25 hm5C_associated_SNPs_105867 0 0 0 0 0 unknown 0.500231643921092 0.500231643921116 0.7679216 4.77395900588817e-14 hm5C_site_59012 DeepMRMD:0.7679216;iRNA_m5C:4.77395900588817e-14 59013 chr5 150843128 150843128 1 + T C UCEC 150843126 + 150843106 150843146 41 CACTTCAGATGGTTCCAGACCTTGATCCACCTGTTAAAAGG CACTTCAGATGGTTCCAGACCTCGATCCACCTGTTAAAAGG < 41bp 0.468587282747897 0.764058131493659 0.11811054 0.643774 prediction 0.528116262987319 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150843126 chr5:150843128 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105868 0 0 1 0 2 Endoplasmic reticulum 0.500231643921093 0.500231643921093 0.287548 0 hm5C_site_59013 DeepMRMD:0.287548;iRNA_m5C:0 59014 chr5 175110375 175110375 1 + C G LUAD 175110374 + 175110354 175110394 41 TGTCTGGCCGTGGGCTTGAACCGCCGGCTCCGCAACCTGAC TGTCTGGCCGTGGGCTTGAACGGCCGGCTCCGCAACCTGAC < 41bp 0.451515301531042 0.764056154797713 0.34412163 0.7923052 prediction 0.528112309595426 Functional Gain - HRH2 ENSG00000113749 CDS Human protein_coding chr5:175110374 chr5:175110375 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_105869 0 0 0 0 0 nucleus 0.50023164358775 0.500232465136685 0.5846104 1.64309786954142e-06 hm5C_site_59014 DeepMRMD:0.5846104;iRNA_m5C:1.64309786954142e-06 59015 chr20 43379242 43379242 1 + C G LUSC 43379238 + 43379218 43379258 41 GCGCTTCCTCGTTGCCAGCGCCGACTGGCCCGAGCGCGCTG GCGCTTCCTCGTTGCCAGCGCCGAGTGGCCCGAGCGCGCTG < 41bp 0.487051275262098 0.764044470910422 0.08286193 0.26484892 prediction 0.528088941820844 Functional Gain - KCNK15 ENSG00000124249 CDS Human protein_coding chr20:43379238 chr20:43379242 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105870 0 0 0 0 0 Nucleus 0.500231642584179 0.500231643920834 0 2.6733100177978e-09 hm5C_site_59015 DeepMRMD:0;iRNA_m5C:2.6733100177978e-09 59016 chr19 41430219 41430219 1 + C A rs146400592 41430215 + 41430195 41430235 41 CCTCTTCCTTGCACTCCTCACAGGCCTCTTGCTACTCCTGG CCTCTTCCTTGCACTCCTCACAGGACTCTTGCTACTCCTGG < 41bp 0.419480614215303 0.764037969280516 0.23537013 0.10943022 prediction 0.528075938561033 Functional Gain - CYP2B7P ENSG00000256612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:41430215 chr19:41430219 . . 0 25 hm5C_associated_SNPs_105871 0 0 0 0 0 unknown 0.500231642019049 0.500231643922576 0 3.80705489355648e-09 hm5C_site_59016 DeepMRMD:0;iRNA_m5C:3.80705489355648e-09 59017 chr3 47378198 47378198 1 + C T SKCM 47378197 + 47378177 47378217 41 AGCACTGTGGAGGCCTACAACCCGGAGACAGACACATGGAC AGCACTGTGGAGGCCTACAACTCGGAGACAGACACATGGAC < 41bp 0.501200640858664 0.765224172608584 0.41567558 0.7432828 prediction 0.528047063499839 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47378197 chr3:47378198 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_105872 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643920992 0.4865656 0 hm5C_site_59017 DeepMRMD:0.4865656;iRNA_m5C:0 59018 chr1 228353822 228353822 1 + T G DLBC 228353820 + 228353800 228353840 41 GGCTACGCCCACTTCCTGAACGTGCAGGGCCGGACGCTCTA GGCTACGCCCACTTCCTGAACGGGCAGGGCCGGACGCTCTA < 41bp 0.414751730355017 0.764011633471724 0.23031649 0.7245055 prediction 0.528023266943447 Functional Gain - IBA57 ENSG00000181873 CDS Human protein_coding chr1:228353820 chr1:228353822 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_105873 0 0 1 0 1 Ribosome 0.50023175708698 0.500231643920622 0.449011 0 hm5C_site_59018 DeepMRMD:0.449011;iRNA_m5C:0 59019 chr4 100756879 100756879 1 + C A rs199971263 100756875 + 100756855 100756895 41 TCTGAGGGACAGCAATGAGACCACCGGGCTGTACTCTCTCT TCTGAGGGACAGCAATGAGACCACAGGGCTGTACTCTCTCT < 41bp 0.350906627527093 0.764006073146433 0.09581402 0.18131602 prediction 0.528012146292865 Functional Gain - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100756875 chr4:100756879 synonymous SNV . 0 25 hm5C_associated_SNPs_105874 0 0 0 0 2 nucleus 0.500231643921089 0.50023164395354 0 6.49018616627473e-11 hm5C_site_59019 DeepMRMD:0;iRNA_m5C:6.49018616627473e-11 59020 chr14 24624527 24624527 1 + C A UCEC 24624523 + 24624503 24624543 41 ACAGTTGCTCAGCTACTTCTCTACCCTTGACATCCAGGTAC ACAGTTGCTCAGCTACTTCTCTACACTTGACATCCAGGTAC < 41bp 0.339352251580385 0.764005371708405 0.21449298 0.18133679 prediction 0.528010743416809 Functional Gain - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24624523 chr14:24624527 synonymous SNV . 0 25 hm5C_associated_SNPs_105875 0 0 1 1 1 Ribosome 0.500231643921097 0.500231645584345 0 3.32649596757051e-09 hm5C_site_59020 DeepMRMD:0;iRNA_m5C:3.32649596757051e-09 59021 chr20 17950744 17950744 1 + C G rs150656271 17950743 + 17950723 17950763 41 AAGATGCTTTGCTCTGTGGACCCGTGAGCAAGCATAAGCTG AAGATGCTTTGCTCTGTGGACGCGTGAGCAAGCATAAGCTG < 41bp 0.571965343355701 0.835957307054396 0.100393206 0.40272552 prediction 0.527983927397391 Functional Gain - MGME1 ENSG00000125871 CDS Human protein_coding chr20:17950743 chr20:17950744 nonsynonymous SNV 0.110 2 22 hm5C_associated_SNPs_105876 0 0 1 2 1 chromatin 0.500232075362952 0.5002312876548 0 0 hm5C_site_59021 DeepMRMD:0;iRNA_m5C:0 59022 chr1 159176175 159176175 1 + T G ESCA 159176172 + 159176152 159176192 41 GCCACCAGGCCACCCGCACCCTCTTGCCCTCTCTGCCCCTC GCCACCAGGCCACCCGCACCCTCGTGCCCTCTCTGCCCCTC < 41bp 0.640193742216763 0.904182442371092 0.08272588 0.10202956 prediction 0.527977400308658 Functional Gain - ACKR1 ENSG00000213088 CDS Human protein_coding chr1:159176172 chr1:159176175 nonsynonymous SNV 0.003 0 24 hm5C_associated_SNPs_105877 0 0 0 0 0 Endoplasmic reticulum 0.500231643913606 0.500231643921093 0 1.49740220223293e-11 hm5C_site_59022 DeepMRMD:0;iRNA_m5C:1.49740220223293e-11 59023 chr3 5229423 5229423 1 + C A rs191393999 5229419 + 5229399 5229439 41 AAGCGAGCCGGGCTACGGGGCGAGCGCGGGGTGCGGTGGTC AAGCGAGCCGGGCTACGGGGCGAGAGCGGGGTGCGGTGGTC < 41bp 0.591917993543462 0.855905485170543 0.90685916 0.9205245 prediction 0.527974983254161 Functional Gain - EDEM1 ENSG00000268509 CDS Human antisense chr3:5229419 chr3:5229423 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_105878 0 0 1 0 0 Ribosome 0.500231643921094 0.500231643299796 0.0273306799999999 0 hm5C_site_59023 DeepMRMD:0.0273306799999999;iRNA_m5C:0 59024 chr3 147130396 147130396 1 + C A LUAD 147130392 + 147130372 147130412 41 GAAGCACATGCACGTGCACACGAGCGACAAGCCCTATCTTT GAAGCACATGCACGTGCACACGAGAGACAAGCCCTATCTTT < 41bp 0.64905592881495 0.913016396731511 0.38158453 0.7830308 prediction 0.527920935833122 Functional Gain - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130392 chr3:147130396 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_105879 0 0 0 0 2 exosome 0.500231644307135 0.500231655281413 0.5660616 2.19485547514608e-08 hm5C_site_59024 DeepMRMD:0.5660616;iRNA_m5C:2.19485547514608e-08 59025 chr12 110924406 110924406 1 + T G rs146589900 110924403 + 110924383 110924423 41 CAGAAACAGCATTACCCTTGCACTACATGGCGACATCAACT CAGAAACAGCATTACCCTTGCACGACATGGCGACATCAACT < 41bp 0.381715433095086 0.763953242796532 0.37783125 0.11582336 prediction 0.527906485593064 Functional Gain - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110924403 chr12:110924406 synonymous SNV . 0 24 hm5C_associated_SNPs_105880 0 0 1 6 1 Cytosol 0.500231640722346 0.50023165850822 0 3.55717493238927e-08 hm5C_site_59025 DeepMRMD:0;iRNA_m5C:3.55717493238927e-08 59026 chr17 73746787 73746787 1 + C G rs141513851 73746786 + 73746766 73746806 41 GTACTGGATTCAGGGTGACTCCGAATCCGAAGCCCACCTGC GTACTGGATTCAGGGTGACTCGGAATCCGAAGCCCACCTGC < 41bp 0.455370249154898 0.763951877817987 0.8413031 0.941963 prediction 0.527903755635974 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73746786 chr17:73746787 synonymous SNV . 0 22 hm5C_associated_SNPs_105881 0 0 0 0 1 Cytosol 0.500231643841834 0.500231643970591 0.2013198 2.57514676249571e-10 hm5C_site_59026 DeepMRMD:0.2013198;iRNA_m5C:2.57514676249571e-10 59027 chr3 124464257 124464257 1 + C A rs2242249 124464253 + 124464233 124464273 41 GACAGAATCTCACTGTCGCCCAGGCTGGAGTTCAGTGGCAC GACAGAATCTCACTGTCGCCCAGGATGGAGTTCAGTGGCAC < 41bp 0.401676691395081 0.763940929221712 0.7409935 0.8419659 prediction 0.527881858443425 Functional Gain - UMPS ENSG00000114491 downstream Human protein_coding chr3:124464253 chr3:124464257 . . 0 25 hm5C_associated_SNPs_105882 1 0 1 0 0 Ribosome 0.500231644232571 0.500231643764989 0.2019448 0 hm5C_site_59027 DeepMRMD:0.2019448;iRNA_m5C:0 Orotic aciduria Orotic aciduria 59028 chrX 105179199 105179199 1 + T A LUAD 105179195 + 105179175 105179215 41 CGTAGAAGTACCTGAGGAATCACCTAAGCAACCCTCTGAAG CGTAGAAGTACCTGAGGAATCACCAAAGCAACCCTCTGAAG < 41bp 0.433920575368643 0.763939050603773 0.15099812 0.20125905 prediction 0.527878101207546 Functional Gain - NRK ENSG00000123572 CDS Human protein_coding chrX:105179195 chrX:105179199 synonymous SNV . 0 25 hm5C_associated_SNPs_105883 0 0 0 0 1 exosome 0.500231643919786 0.500231643917355 0 0 hm5C_site_59028 DeepMRMD:0;iRNA_m5C:0 59029 chr17 56344897 56344897 1 + C A CESC 56344893 + 56344873 56344913 41 GGAAAGGGGTCGGGTGGGGCCTCTCCTGGCCTGCCTCTTGG GGAAAGGGGTCGGGTGGGGCCTCTACTGGCCTGCCTCTTGG < 41bp 0.340287649558696 0.76392663436348 0.3873415 0.91591907 prediction 0.527853268726959 Functional Gain - LPO ENSG00000167419 CDS Human protein_coding chr17:56344893 chr17:56344897 synonymous SNV . 0 25 hm5C_associated_SNPs_105884 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0.83183814 0 hm5C_site_59029 DeepMRMD:0.83183814;iRNA_m5C:0 59030 chr9 137777172 137777172 1 + C A UCEC 137777168 + 137777148 137777188 41 ACCTGCCCGACTGCCGGCCCCTGACTGTGCTCTGTGACATG ACCTGCCCGACTGCCGGCCCCTGAATGTGCTCTGTGACATG < 41bp 0.342317722034754 0.763924896831819 0.008539498 0.10433841 prediction 0.527849793663638 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777168 chr9:137777172 nonsynonymous SNV 0.728 0 25 hm5C_associated_SNPs_105885 0 0 0 0 2 exosome 0.500234803130719 0.500231730834896 0 0 hm5C_site_59030 DeepMRMD:0;iRNA_m5C:0 59031 chr7 148427226 148427226 1 + C G LUAD 148427225 + 148427205 148427245 41 ATCCCTCACAATGTCGTCAACCCGGAGCCAGAACCCCCACG ATCCCTCACAATGTCGTCAACGCGGAGCCAGAACCCCCACG < 41bp 0.587613230807211 0.85151931675275 0.33785903 0.5856981 prediction 0.52781217189108 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148427225 chr7:148427226 synonymous SNV . 0 22 hm5C_associated_SNPs_105886 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921093 0.1713962 6.66133814775094e-16 hm5C_site_59031 DeepMRMD:0.1713962;iRNA_m5C:6.66133814775094e-16 59032 chr3 128623263 128623263 1 + T C LUAD 128623261 + 128623241 128623281 41 CTGATGGCTCAGAAGGCTTACGTCATGGAGAGTATGACCTA CTGATGGCTCAGAAGGCTTACGCCATGGAGAGTATGACCTA < 41bp 0.55108288754059 0.814988047331662 0.022086263 0.0131106675 prediction 0.527810319582145 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128623261 chr3:128623263 nonsynonymous SNV 0.924 1 23 hm5C_associated_SNPs_105887 0 0 1 3 2 Endoplasmic reticulum 0.500231643921228 0.500231644802245 0 1.76203251989193e-09 hm5C_site_59032 DeepMRMD:0;iRNA_m5C:1.76203251989193e-09 59033 chr1 244541927 244541927 1 + C A SKCM 244541923 + 244541903 244541943 41 CTTACCGACGAGACTATTCTCTGCCATTTTATGAGATTGGT CTTACCGACGAGACTATTCTCTGCAATTTTATGAGATTGGT < 41bp 0.351590157567394 0.76390118452275 0.2459735 0.40228993 prediction 0.5278023690455 Functional Gain - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244541923 chr1:244541927 nonsynonymous SNV 0.403 4 25 hm5C_associated_SNPs_105888 0 0 0 0 2 unknown 0.500231643921113 0.500230882423263 0 0 hm5C_site_59033 DeepMRMD:0;iRNA_m5C:0 59034 chr2 242128089 242128089 1 + C G PRAD 242128088 + 242128068 242128108 41 ACCCCTCCCCACCCTCTGTCCCGCAGTGAGGACGGGACTCT ACCCCTCCCCACCCTCTGTCCGGCAGTGAGGACGGGACTCT < 41bp 0.569800257591556 0.833700096634818 0.3098557 0.38458997 prediction 0.527799678086525 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242128088 chr2:242128089 synonymous SNV . 0 22 hm5C_associated_SNPs_105889 0 0 0 0 1 chromatin 0.500231706015263 0.500231643444155 0 0 hm5C_site_59034 DeepMRMD:0;iRNA_m5C:0 59035 chr10 94834785 94834785 1 + T G COAD 94834782 + 94834762 94834802 41 TCGAGGAAATGACCCGCAATCTCTTCTCGCTGCCCATCGAC TCGAGGAAATGACCCGCAATCTCGTCTCGCTGCCCATCGAC < 41bp 0.642151654263401 0.90602908968284 0.04647699 0.087388664 prediction 0.527754870838877 Functional Gain - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94834782 chr10:94834785 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_105890 0 0 0 0 1 Endoplasmic reticulum 0.500231605392516 0.50023164057425 0 7.03634674970033e-08 hm5C_site_59035 DeepMRMD:0;iRNA_m5C:7.03634674970033e-08 59036 chr1 152883976 152883976 1 + C A HNSC 152883972 + 152883952 152883992 41 CCACAAAGGGAGAAGTATTGCTTCCTGTAGAGCACCAGCAG CCACAAAGGGAGAAGTATTGCTTCATGTAGAGCACCAGCAG < 41bp 0.367928491566276 0.763875871856273 0.18414295 0.41719568 prediction 0.527751743712546 Functional Gain - IVL ENSG00000163207 CDS Human protein_coding chr1:152883972 chr1:152883976 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_105891 0 0 0 0 0 unknown 0.500231633362668 0.500231496823423 0 0 hm5C_site_59036 DeepMRMD:0;iRNA_m5C:0 59037 chr4 170634350 170634350 1 + T C STAD 170634348 + 170634328 170634368 41 AAGCTTCGAAGCATTCTTGACATGAGCCCTTTTACAGTGAC AAGCTTCGAAGCATTCTTGACACGAGCCCTTTTACAGTGAC < 41bp 0.475660915669641 0.763873869902944 0.14335313 0.117841065 prediction 0.527747739805889 Functional Gain - CLCN3 ENSG00000109572 CDS Human protein_coding chr4:170634348 chr4:170634350 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105892 0 0 1 0 1 Ribosome 0.500231643921093 0.500231643921093 0 1.55431223447522e-15 hm5C_site_59037 DeepMRMD:0;iRNA_m5C:1.55431223447522e-15 59038 chr6 25727195 25727195 1 + T G UCEC 25727192 + 25727172 25727212 41 CAAGAAGGGCTTTAAGAAAGCTGTCGTTAAGACCCAGAAAA CAAGAAGGGCTTTAAGAAAGCTGGCGTTAAGACCCAGAAAA < 41bp 0.390815694921475 0.763844567954807 0.09533858 0.3833169 prediction 0.527689135909614 Functional Gain - HIST1H2BA ENSG00000146047 CDS Human protein_coding chr6:25727192 chr6:25727195 nonsynonymous SNV 0.001 2 24 hm5C_associated_SNPs_105893 0 0 0 0 0 Cytosol 0.50023164392101 0.500231643849449 0 0 hm5C_site_59038 DeepMRMD:0;iRNA_m5C:0 59039 chr11 55321900 55321900 1 + C G LUSC 55321896 + 55321876 55321916 41 ATTTTCCTTTGTCCTAATTGCAGACTATACATGATCCCTGT ATTTTCCTTTGTCCTAATTGCAGAGTATACATGATCCCTGT < 41bp 0.493680119009489 0.763839811619469 0.091563106 0.5586311 prediction 0.527679623238938 Functional Gain - OR4C15 ENSG00000181939 CDS Human protein_coding chr11:55321896 chr11:55321900 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_105894 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0.1172622 3.10862446895044e-15 hm5C_site_59039 DeepMRMD:0.1172622;iRNA_m5C:3.10862446895044e-15 59040 chr9 35752830 35752830 1 + T A KIRC 35752826 + 35752806 35752846 41 CCTACTAGCCCCACCCTGGCCTCATATGCTGCCCCAGGCCC CCTACTAGCCCCACCCTGGCCTCAAATGCTGCCCCAGGCCC < 41bp 0.439397692434634 0.763820677464123 0.04417503 0.22641933 prediction 0.527641354928245 Functional Gain - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35752826 chr9:35752830 nonsynonymous SNV 0.978 1 25 hm5C_associated_SNPs_105895 0 0 1 0 0 Cytosol 0.500231643919913 0.500231643921118 0 2.41051623106614e-12 hm5C_site_59040 DeepMRMD:0;iRNA_m5C:2.41051623106614e-12 59041 chr19 9297310 9297310 1 + T A LAML 9297306 + 9297286 9297326 41 ATGTACACTGTGGTCACCCCCATGTTGAACCCCTTCATCTA ATGTACACTGTGGTCACCCCCATGATGAACCCCTTCATCTA < 41bp 0.461598210353438 0.763817558209743 0.026748925 0.0372234 prediction 0.527635116419485 Functional Gain - OR7D2 ENSG00000188000 CDS Human protein_coding chr19:9297306 chr19:9297310 nonsynonymous SNV 0.991 2 25 hm5C_associated_SNPs_105896 0 0 0 0 0 Nucleus 0.500231642070903 0.500231642539396 0 9.36986932487116e-10 hm5C_site_59041 DeepMRMD:0;iRNA_m5C:9.36986932487116e-10 59042 chr1 17714924 17714924 1 + C G OV 17714920 + 17714900 17714940 41 TGGTGCTGGGGCCCGACCAGCACGCCTATACCTTGGCCCTC TGGTGCTGGGGCCCGACCAGCACGGCTATACCTTGGCCCTC < 41bp 0.546732380407591 0.810534635543021 0.4182406 0.81224227 prediction 0.527604510270859 Functional Gain - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17714920 chr1:17714924 . 0.001 0 25 hm5C_associated_SNPs_105897 0 0 0 0 1 exosome 0.500231643957549 0.500231643806946 0.62448454 0 hm5C_site_59042 DeepMRMD:0.62448454;iRNA_m5C:0 59043 chr6 55128622 55128622 1 + T A LUSC 55128618 + 55128598 55128638 41 TTCGCAAACTCTGGTGTCGACAGGTATATAGTTTCAAATAT TTCGCAAACTCTGGTGTCGACAGGAATATAGTTTCAAATAT < 41bp 0.555270075752124 0.819070791510757 0.39574078 0.47601062 prediction 0.527601431517265 Functional Gain - HCRTR2 ENSG00000137252 splicing Human protein_coding chr6:55128618 chr6:55128622 . 0.999 0 25 hm5C_associated_SNPs_105898 0 0 0 0 0 unknown 0.500231643921104 0.500231643921092 0 0 hm5C_site_59043 DeepMRMD:0;iRNA_m5C:0 59044 chr12 56984606 56984606 1 + C G rs10450 56984605 + 56984585 56984625 41 GACAAAGCTCTCTAAACTGTCCAGAGCAACCTGCCCTGCCC GACAAAGCTCTCTAAACTGTCGAGAGCAACCTGCCCTGCCC < 41bp 0.552180747127893 0.815980496090147 0.65643626 0.90930676 prediction 0.527599497924509 Functional Gain - RBMS2 ENSG00000076067 UTR3 Human protein_coding chr12:56984605 chr12:56984606 . . 0 22 hm5C_associated_SNPs_105899 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643919499 0.505741 0 hm5C_site_59044 DeepMRMD:0.505741;iRNA_m5C:0 59045 chr13 45589616 45589616 1 + C G rs151309735 45589615 + 45589595 45589635 41 CATGGATGACTGAACTTCCTCCAGAAATGAAAGACTTTGGT CATGGATGACTGAACTTCCTCGAGAAATGAAAGACTTTGGT < 41bp 0.552507557259999 0.816295527536065 0.040456444 0.4679585 prediction 0.527575940552132 Functional Gain - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45589615 chr13:45589616 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_105900 0 0 1 0 1 cytosol 0.500231657707645 0.500231643542768 0 0 hm5C_site_59045 DeepMRMD:0;iRNA_m5C:0 59046 chr1 26604071 26604071 1 + T G rs11579354 26604069 + 26604049 26604089 41 TGTTCCCAGCCCTAGGCTGACATGAGAGACGAACAGGCTGT TGTTCCCAGCCCTAGGCTGACAGGAGAGACGAACAGGCTGT < 41bp 0.597175729180218 0.860962633076458 0.24162188 0.90326965 prediction 0.527573807792479 Functional Gain - CEP85 ENSG00000130695 UTR3 Human protein_coding chr1:26604069 chr1:26604071 . . 0 23 hm5C_associated_SNPs_105901 0 0 1 0 0 Nucleus 0.500231643922101 0.500231643921093 0.8065393 0 hm5C_site_59046 DeepMRMD:0.8065393;iRNA_m5C:0 59047 chr7 157205864 157205864 1 + C G rs73507230 157205863 + 157205843 157205883 41 GAGGCACCACCGGGAACCCACCGGATCCTCACTCAGGCTTT GAGGCACCACCGGGAACCCACGGGATCCTCACTCAGGCTTT < 41bp 0.568846572100012 0.832631970419352 0.8522018 0.92949104 prediction 0.527570796638681 Functional Gain - DNAJB6 ENSG00000105993 intronic Human protein_coding chr7:157205863 chr7:157205864 . . 0 22 hm5C_associated_SNPs_105902 0 0 0 0 0 Ribosome 0.500231643921093 0.500231643921092 0.15457848 0 hm5C_site_59047 DeepMRMD:0.15457848;iRNA_m5C:0 59048 chr1 248285719 248285719 1 + C G rs373362384 248285718 + 248285698 248285738 41 TGGAATCATTTATGCTGTAGCCACATTTTCCTTCTCCTACT TGGAATCATTTATGCTGTAGCGACATTTTCCTTCTCCTACT < 41bp 0.523250835860861 0.787011148366203 0.33773738 0.49489725 prediction 0.527520625010684 Functional Gain - OR2M1P ENSG00000177233 ncRNA_exonic Human unprocessed_pseudogene chr1:248285718 chr1:248285719 . . 0 22 hm5C_associated_SNPs_105903 0 0 0 0 0 unknown 0.500231640509759 0.500231644454469 0 7.88942045026886e-09 hm5C_site_59048 DeepMRMD:0;iRNA_m5C:7.88942045026886e-09 59049 chr11 66136939 66136939 1 + G T SARC 66136943 - 66136923 66136963 41 CCAGGATCCTGAGCACCAACCACACGGGTCCCGAGGATGCC CCAGGATCCTGAGCACCAACCACAAGGGTCCCGAGGATGCC < 41bp 0.345023317282961 0.763749110965105 0.27137434 0.30849874 prediction 0.527498221930211 Functional Gain - SLC29A2 ENSG00000174669 CDS Human protein_coding chr11:66136943 chr11:66136939 nonsynonymous SNV 0.584 0 25 hm5C_associated_SNPs_105904 0 0 1 0 2 Cytosol 0.500231644240557 0.500231653117934 0 1.77547538893208e-08 hm5C_site_59049 DeepMRMD:0;iRNA_m5C:1.77547538893208e-08 59050 chr4 122737590 122737590 1 + C G BRCA 122737589 + 122737569 122737609 41 TTTTGGAACCAGACAAGAATCCAAAGAAAATAAGGTAACAA TTTTGGAACCAGACAAGAATCGAAAGAAAATAAGGTAACAA < 41bp 0.484393150501878 0.763747852162775 0.36267498 0.8543769 prediction 0.52749570432555 Functional Gain - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122737589 chr4:122737590 nonsynonymous SNV 0.996 1 22 hm5C_associated_SNPs_105905 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0.7087538 0 hm5C_site_59050 DeepMRMD:0.7087538;iRNA_m5C:0 59051 chr13 113610475 113610475 1 + C G rs77787911 113610474 + 113610454 113610494 41 GCATCCCTGGTCCGCAGAGGCCGGTCTGTGCCGCAAAGCCT GCATCCCTGGTCCGCAGAGGCGGGTCTGTGCCGCAAAGCCT < 41bp 0.549420982972302 0.813165421443131 0.40471178 0.8955612 prediction 0.52748887694166 Functional Gain - ATP11A;MCF2L-AS1 ENSG00000126217 UTR3 Human protein_coding chr13:113610474 chr13:113610475 . . 0 22 hm5C_associated_SNPs_105906 0 0 0 0 0 unknown 0.500231643974625 0.500231643922745 0.7911224 0 hm5C_site_59051 DeepMRMD:0.7911224;iRNA_m5C:0 59052 chr22 21356316 21356316 1 + C G rs79461566 21356315 + 21356295 21356335 41 GCCTGTCGGGTCCCCCCCGGCCCGTTGTCGCCCCAACCCCG GCCTGTCGGGTCCCCCCCGGCGCGTTGTCGCCCCAACCCCG < 41bp 0.466745226378067 0.763742742991689 0.27694732 0.60781354 prediction 0.527485485983378 Functional Gain - THAP7-AS1 ENSG00000230513 ncRNA_exonic Human antisense chr22:21356315 chr22:21356316 . . 0 22 hm5C_associated_SNPs_105907 0 0 0 0 0 unknown 0.500231607810112 0.500231640984802 0.21562708 6.63493784358593e-08 hm5C_site_59052 DeepMRMD:0.21562708;iRNA_m5C:6.63493784358593e-08 59053 chr6 41753151 41753151 1 + C G GBM 41753147 + 41753127 41753167 41 GGGAACAGCGCTGCTGGCACCAGCCTTGCTTTGCCTGCCAG GGGAACAGCGCTGCTGGCACCAGCGTTGCTTTGCCTGCCAG < 41bp 0.556949766580494 0.820690755216067 0.3646472 0.8659872 prediction 0.527481977271146 Functional Gain - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41753147 chr6:41753151 nonsynonymous SNV 0.686 1 25 hm5C_associated_SNPs_105908 0 0 1 0 0 nucleolus 0.500231643921092 0.500231643838505 0.7319744 0 hm5C_site_59053 DeepMRMD:0.7319744;iRNA_m5C:0 59054 chr1 2435900 2435900 1 + C G LUAD 2435899 + 2435879 2435919 41 CTGCCCAGCCTGGGCCTGGGCCGCAGCCGTGAGAACCTCGC CTGCCCAGCCTGGGCCTGGGCGGCAGCCGTGAGAACCTCGC < 41bp 0.5336263833619 0.797348122726151 0.2574538 0.4709808 prediction 0.527443478728502 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2435899 chr1:2435900 nonsynonymous SNV 0.022 0 22 hm5C_associated_SNPs_105909 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921082 0 0 hm5C_site_59054 DeepMRMD:0;iRNA_m5C:0 59055 chr22 50639636 50639636 1 + C G rs6010201 50639635 + 50639615 50639655 41 CGACAACCGCGCCCTGCGCGCCCTGCCCGTGGAGGCGCCGC CGACAACCGCGCCCTGCGCGCGCTGCCCGTGGAGGCGCCGC < 41bp 0.474268874704147 0.763721006481661 0.044783503 0.39320275 prediction 0.527442012963321 Functional Gain - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50639635 chr22:50639636 unknown . 0 22 hm5C_associated_SNPs_105910 0 0 1 0 0 Nucleus 0.500231643816143 0.500231643751108 0 0 hm5C_site_59055 DeepMRMD:0;iRNA_m5C:0 59056 chr11 22363231 22363231 1 + T A SKCM 22363227 + 22363207 22363247 41 GCCATCATGAGCGGCCTGGGCTTCTGCATCTCCTTCGGTAT GCCATCATGAGCGGCCTGGGCTTCAGCATCTCCTTCGGTAT < 41bp 0.427867779051989 0.763708045643843 0.058689 0.07748273 prediction 0.527416091287686 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363227 chr11:22363231 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_105911 0 0 0 0 1 unknown 0.500231643921059 0.500231643921088 0 5.72875080706581e-14 hm5C_site_59056 DeepMRMD:0;iRNA_m5C:5.72875080706581e-14 59057 chr1 78280876 78280876 1 + C A COAD 78280872 + 78280852 78280892 41 TCTCCAAGAGGAGTTTGAAGCTACCCTTGGGGCATCTGATC TCTCCAAGAGGAGTTTGAAGCTACACTTGGGGCATCTGATC < 41bp 0.354406020212495 0.763694693734448 0.021249712 0.024710357 prediction 0.527389387468896 Functional Gain - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78280872 chr1:78280876 synonymous SNV . 0 25 hm5C_associated_SNPs_105912 0 0 1 0 2 unknown 0.500231641213405 0.500231643823023 0 5.21923593232998e-09 hm5C_site_59057 DeepMRMD:0;iRNA_m5C:5.21923593232998e-09 59058 chr4 40752778 40752778 1 + C A HNSC 40752774 + 40752754 40752794 41 ATCCCGAGATCATCTCCCAACTCACTTCCCTGCCTCTGTCC ATCCCGAGATCATCTCCCAACTCAATTCCCTGCCTCTGTCC < 41bp 0.341415296628702 0.763681953941929 0.10956526 0.104840785 prediction 0.527363907883859 Functional Gain - NSUN7 ENSG00000179299 CDS Human protein_coding chr4:40752774 chr4:40752778 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_105913 0 0 0 0 0 exosome 0.500231643919907 0.500231643921092 0 2.37077024678456e-12 hm5C_site_59058 DeepMRMD:0;iRNA_m5C:2.37077024678456e-12 59059 chr20 42695394 42695394 1 + C T SKCM 42695393 + 42695373 42695413 41 TTCCCGCACATCTCTGAGTTCCCCAGCAGCTCGGGATCCTG TTCCCGCACATCTCTGAGTTCTCCAGCAGCTCGGGATCCTG < 41bp 0.525438777128275 0.789109305531638 0.14896634 0.9515064 prediction 0.527341056806725 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42695393 chr20:42695394 nonsynonymous SNV 0.931 0 22 hm5C_associated_SNPs_105914 0 0 0 0 1 exosome 0.500231633078719 0.500231665403136 0.9030128 6.4648835174097e-08 hm5C_site_59059 DeepMRMD:0.9030128;iRNA_m5C:6.4648835174097e-08 59060 chr2 224824695 224824695 1 + T C rs35331337 224824693 + 224824673 224824713 41 CCCTGTTACAGAGCAGTGGACCTGAGAGGACTGCACTTTTC CCCTGTTACAGAGCAGTGGACCCGAGAGGACTGCACTTTTC < 41bp 0.505520055350335 0.76918830700946 0.58910143 0.52358276 prediction 0.52733650331825 Functional Gain - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824693 chr2:224824695 synonymous SNV . 0 23 hm5C_associated_SNPs_105915 1 0 1 0 0 Ribosome 0.500227338209187 0.500231643860145 0 8.61130191509574e-06 hm5C_site_59060 DeepMRMD:0;iRNA_m5C:8.61130191509574e-06 not specified not specified 59061 chr4 132651088 132651088 1 + C G rs28801718 132651084 + 132651064 132651104 41 CGCCGCCGCAACCTCCAGCACCGCCGCCCCAGTCCCGGCAG CGCCGCCGCAACCTCCAGCACCGCGGCCCCAGTCCCGGCAG < 41bp 0.50982309324894 0.773482912870418 0.41873214 0.89807117 prediction 0.527319639242957 Functional Gain - LINC02479;SNHG27 ENSG00000241392;ENSG00000252014 intergenic Human other chr4:132651084 chr4:132651088 . . 0 25 hm5C_associated_SNPs_105916 0 0 0 0 0 unknown 0.500231643921092 0.500231643920957 0.79614234 0 hm5C_site_59061 DeepMRMD:0.79614234;iRNA_m5C:0 59062 chr14 93282672 93282672 1 + T C STAD 93282670 + 93282650 93282690 41 GATAGCAGCACTGCCAGTAGCATGGAGCTGGAAGAACTTCG GATAGCAGCACTGCCAGTAGCACGGAGCTGGAAGAACTTCG < 41bp 0.516374994376561 0.780034178951488 0.77512676 0.62463033 prediction 0.527318369149855 Functional Gain - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93282670 chr14:93282672 nonsynonymous SNV 0.779 1 23 hm5C_associated_SNPs_105917 0 0 1 0 2 chromatin 0.50023164500367 0.500231671410757 0 5.28141739231103e-08 hm5C_site_59062 DeepMRMD:0;iRNA_m5C:5.28141739231103e-08 59063 chr16 77246517 77246517 1 + C A rs62049594 77246513 + 77246493 77246533 41 TTCGGGGAGCAGGTCCGGAGCGCCCCCGAGGTCGGGGCCGG TTCGGGGAGCAGGTCCGGAGCGCCACCGAGGTCGGGGCCGG < 41bp 0.64888537229651 0.912537179446012 0.1377672 0.27055797 prediction 0.527303614299004 Functional Gain - SYCE1L ENSG00000205078 CDS Human protein_coding chr16:77246513 chr16:77246517 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_105918 0 0 0 0 2 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_59063 DeepMRMD:0;iRNA_m5C:0 59064 chr15 41145816 41145816 1 + C A rs149720019 41145812 + 41145792 41145832 41 ACAGTCACTGTGCTGTCCACCAAGCAGACAGAAGGTGAGGG ACAGTCACTGTGCTGTCCACCAAGAAGACAGAAGGTGAGGG < 41bp 0.362080559023315 0.763651320247388 0.09296286 0.059714705 prediction 0.527302640494775 Functional Gain - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41145812 chr15:41145816 nonsynonymous SNV 0.974 4 25 hm5C_associated_SNPs_105919 0 0 0 0 1 Ribosome 0.500231642587709 0.500231643920933 0 2.66644839541641e-09 hm5C_site_59064 DeepMRMD:0;iRNA_m5C:2.66644839541641e-09 59065 chr7 143657580 143657580 1 + T A SKCM 143657576 + 143657556 143657596 41 CAGCTGCCCATGTGCAGAAACAAGTTTATTGATCACATATC CAGCTGCCCATGTGCAGAAACAAGATTATTGATCACATATC < 41bp 0.561854877838925 0.825501991075402 0.10978395 0.18957365 prediction 0.527294226472953 Functional Gain - OR2F1 ENSG00000213215 CDS Human polymorphic_pseudogene chr7:143657576 chr7:143657580 nonsynonymous SNV 0.297 0 25 hm5C_associated_SNPs_105920 0 0 0 0 0 unknown 0.500231637344046 0.50023164395027 0 1.32124475804574e-08 hm5C_site_59065 DeepMRMD:0;iRNA_m5C:1.32124475804574e-08 59066 chr4 90034311 90034311 1 + C A BLCA 90034307 + 90034287 90034327 41 CTATGCAAACAGTTCAGATCCTACCAGTGGAGTATCCAAAC CTATGCAAACAGTTCAGATCCTACAAGTGGAGTATCCAAAC < 41bp 0.359873361906207 0.76364683919465 0.019213796 0.52514684 prediction 0.5272936783893 Functional Gain - TIGD2 ENSG00000180346 CDS Human protein_coding chr4:90034307 chr4:90034311 synonymous SNV . 0 25 hm5C_associated_SNPs_105921 0 0 1 0 0 Cytosol 0.500231643985654 0.500231666621641 0.05029368 4.52719746135699e-08 hm5C_site_59066 DeepMRMD:0.05029368;iRNA_m5C:4.52719746135699e-08 59067 chr19 49261381 49261381 1 + C A LUSC 49261377 + 49261357 49261397 41 GCCCCCCGCACTCCCGGAGCCACCCGGAATCCTGGCCCCCC GCCCCCCGCACTCCCGGAGCCACCAGGAATCCTGGCCCCCC < 41bp 0.657044684175351 0.92068715059115 0.17319882 0.28875738 prediction 0.527284932831597 Functional Gain - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49261377 chr19:49261381 synonymous SNV . 0 25 hm5C_associated_SNPs_105922 0 0 0 0 0 unknown 0.500231643921092 0.500231643920827 0 0 hm5C_site_59067 DeepMRMD:0;iRNA_m5C:0 59068 chr1 18960982 18960982 1 + C G LUAD 18960981 + 18960961 18961001 41 TCCAAGATTCTTTGCCGCTACCAGGAGACCGGGTCCATCCG TCCAAGATTCTTTGCCGCTACGAGGAGACCGGGTCCATCCG < 41bp 0.447606347121375 0.763642352829821 0.9075954 0.86903924 prediction 0.527284705659642 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:18960981 chr1:18960982 nonsynonymous SNV 0.990 5 22 hm5C_associated_SNPs_105923 0 0 0 0 0 exosome 0.500231643921092 0.50023164392109 0 0 hm5C_site_59068 DeepMRMD:0;iRNA_m5C:0 59069 chr19 47858603 47858603 1 + T G rs542850010 47858601 + 47858581 47858621 41 GTGCCTGGGAGGCTGTTCCCCATCACGGTGAGTACTTCCCC GTGCCTGGGAGGCTGTTCCCCAGCACGGTGAGTACTTCCCC < 41bp 0.414931305471598 0.763624978707385 0.15406588 0.20969635 prediction 0.527249957414769 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47858601 chr19:47858603 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_105924 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59069 DeepMRMD:0;iRNA_m5C:0 59070 chr16 57722303 57722303 1 + C A THCA 57722299 + 57722279 57722319 41 GCTGGTTCACCATCCTTTACCTCCCAAGTCAGAGCACCACA GCTGGTTCACCATCCTTTACCTCCAAAGTCAGAGCACCACA < 41bp 0.335661979113311 0.763620422625066 0.0054450333 0.9420277 prediction 0.527240845250133 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57722299 chr16:57722303 nonsynonymous SNV 0.373 2 25 hm5C_associated_SNPs_105925 0 0 0 0 1 Nucleus 0.50022963614722 0.500254967315335 0.8840554 5.06623362293013e-05 hm5C_site_59070 DeepMRMD:0.8840554;iRNA_m5C:5.06623362293013e-05 59071 chr15 45410080 45410080 1 + C A KIRP 45410076 + 45410056 45410096 41 GCACAAGCAGGCCGCTCTCCCAGACTTAAAATGTATCACCA GCACAAGCAGGCCGCTCTCCCAGAATTAAAATGTATCACCA < 41bp 0.642426918574731 0.906047205497288 0.75479764 0.7280114 prediction 0.527240573845112 Functional Gain - DUOXA2 ENSG00000140274 CDS Human protein_coding chr15:45410076 chr15:45410080 nonsynonymous SNV 0.540 1 25 hm5C_associated_SNPs_105926 0 0 0 0 0 unknown 0.500231643940614 0.500231643921602 0 0 hm5C_site_59071 DeepMRMD:0;iRNA_m5C:0 59072 chr11 64884571 64884571 1 + C G rs200508022 64884567 + 64884547 64884587 41 GGGTACGACGGGCGTGCAGGCCCCCGGGACATCTCCAAGAA GGGTACGACGGGCGTGCAGGCCCCGGGGACATCTCCAAGAA < 41bp 0.487111205806392 0.763616578416319 0.3583091 0.69811094 prediction 0.527233156832638 Functional Gain - ZNHIT2 ENSG00000174276 CDS Human protein_coding chr11:64884567 chr11:64884571 synonymous SNV . 0 25 hm5C_associated_SNPs_105927 0 0 0 0 0 Ribosome 0.500231643921095 0.500231644564236 0.39622188 1.28628041551337e-09 hm5C_site_59072 DeepMRMD:0.39622188;iRNA_m5C:1.28628041551337e-09 59073 chr10 37430800 37430800 1 + T A BRCA 37430796 + 37430776 37430816 41 TGAAAGCTTGGTGGAAAAAACACCTGATGAGGCTGCATCCT TGAAAGCTTGGTGGAAAAAACACCAGATGAGGCTGCATCCT < 41bp 0.586947845406422 0.850554139896925 0.10383764 0.16223279 prediction 0.527212588981007 Functional Gain - ANKRD30A ENSG00000148513 CDS Human protein_coding chr10:37430796 chr10:37430800 synonymous SNV . 0 25 hm5C_associated_SNPs_105928 0 0 0 0 0 exosome 0.500231643926958 0.500231643951605 0 4.92947904717767e-11 hm5C_site_59073 DeepMRMD:0;iRNA_m5C:4.92947904717767e-11 59074 chr11 18362844 18362844 1 + T C COAD 18362842 + 18362822 18362862 41 GCAGAAAATGTTCCCCACAACATGACAGAGAAGGAATTCTG GCAGAAAATGTTCCCCACAACACGACAGAGAAGGAATTCTG < 41bp 0.531992025164645 0.795590203874131 0.034637034 0.05520922 prediction 0.527196357418972 Functional Gain - GTF2H1 ENSG00000110768 CDS Human protein_coding chr11:18362842 chr11:18362844 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_105929 0 0 1 0 1 Cytosol 0.50023164390882 0.500231643929657 0 4.16742196307496e-11 hm5C_site_59074 DeepMRMD:0;iRNA_m5C:4.16742196307496e-11 59075 chr6 26252226 26252226 1 + T G BRCA 26252223 + 26252203 26252243 41 AAGCACGCCGTGTCCGAGGGCACTAAGGCCGTCACCAAGTA AAGCACGCCGTGTCCGAGGGCACGAAGGCCGTCACCAAGTA < 41bp 0.626508536992084 0.890097344121924 0.52282745 0.53885984 prediction 0.52717761425968 Functional Gain - HIST1H2BH ENSG00000197459 CDS Human other chr6:26252223 chr6:26252226 synonymous SNV . 0 24 hm5C_associated_SNPs_105930 0 0 1 0 0 Nucleus 0.500231645057702 0.500231645025652 0.03206478 0 hm5C_site_59075 DeepMRMD:0.03206478;iRNA_m5C:0 59076 chr2 66691322 66691322 1 + T C COAD 66691320 + 66691300 66691340 41 CCCTTCCAGCGGTGGCCACACGTCACACAGTGGGGACAACA CCCTTCCAGCGGTGGCCACACGCCACACAGTGGGGACAACA < 41bp 0.479312532625326 0.763588085664325 0.021641284 0.032143414 prediction 0.52717617132865 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691320 chr2:66691322 nonsynonymous SNV 0.950 4 23 hm5C_associated_SNPs_105931 0 0 0 1 2 chromatin 0.500231643921087 0.500231644573408 0 1.30464217207305e-09 hm5C_site_59076 DeepMRMD:0;iRNA_m5C:1.30464217207305e-09 59077 chr13 27844913 27844913 1 + C A rs541666865 27844909 + 27844889 27844929 41 ACGAGGAGGAGCTGGGACGGCCGCCGCGCTCCCGGGCGCAC ACGAGGAGGAGCTGGGACGGCCGCAGCGCTCCCGGGCGCAC < 41bp 0.554453622892301 0.818040889074102 0.2927137 0.40625334 prediction 0.527174532363602 Functional Gain - RASL11A ENSG00000122035 UTR5 Human protein_coding chr13:27844909 chr13:27844913 . . 0 25 hm5C_associated_SNPs_105932 0 0 0 0 0 Ribosome 0.500231618591214 0.500231643921103 0 5.06597785943086e-08 hm5C_site_59077 DeepMRMD:0;iRNA_m5C:5.06597785943086e-08 59078 chr11 55861588 55861588 1 + C G LUSC 55861587 + 55861567 55861607 41 GATAACACATCATCGCTGACCCAGGCGCAGGTGGCATCTGT GATAACACATCATCGCTGACCGAGGCGCAGGTGGCATCTGT < 41bp 0.554679029632151 0.818265094123468 0.2786073 0.5393829 prediction 0.527172128982634 Functional Gain - OR8I2 ENSG00000172154 CDS Human protein_coding chr11:55861587 chr11:55861588 nonsynonymous SNV 0.012 0 22 hm5C_associated_SNPs_105933 0 0 0 0 0 unknown 0.50023164396155 0.500230333684884 0.0787658 0 hm5C_site_59078 DeepMRMD:0.0787658;iRNA_m5C:0 59079 chr2 241631698 241631698 1 + C A LUSC 241631694 + 241631674 241631714 41 CTGGCGGCACAGGGGCTGGGCATGCAGGCCGCCTGCACCCT CTGGCGGCACAGGGGCTGGGCATGAAGGCCGCCTGCACCCT < 41bp 0.381035461816174 0.763584472041749 0.49641308 0.61853844 prediction 0.527168944083497 Functional Gain - AQP12A ENSG00000184945 CDS Human protein_coding chr2:241631694 chr2:241631698 nonsynonymous SNV 0.057 0 25 hm5C_associated_SNPs_105934 0 0 0 0 1 unknown 0.500231643905469 0.500231643921092 0.23707688 3.12476711172849e-11 hm5C_site_59079 DeepMRMD:0.23707688;iRNA_m5C:3.12476711172849e-11 59080 chr20 30422215 30422215 1 + C G rs138885545 30422211 + 30422191 30422231 41 GCTGGCCCCCACCCACCTTCCTTGCGACCACCAACACACAG GCTGGCCCCCACCCACCTTCCTTGGGACCACCAACACACAG < 41bp 0.520225772402144 0.783805802248519 0.013570428 0.0038814247 prediction 0.527160059692751 Functional Gain - MYLK2 ENSG00000101306 UTR3 Human protein_coding chr20:30422211 chr20:30422215 . . 0 25 hm5C_associated_SNPs_105935 1 0 0 0 0 exosome 0.500231657983137 0.500231644057894 0 0 hm5C_site_59080 DeepMRMD:0;iRNA_m5C:0 Hypertrophic cardiomyopathy Hypertrophic cardiomyopathy 59081 chr1 11345737 11345737 1 + T C PRAD 11345735 + 11345715 11345755 41 TACGTGGCTCTGGGAGACCTCATCATCCTCATCACTTTTGG TACGTGGCTCTGGGAGACCTCACCATCCTCATCACTTTTGG < 41bp 0.516572621840038 0.780149830154342 0.089080274 0.15682769 prediction 0.527154416628608 Functional Gain - UBIAD1 ENSG00000120942 CDS Human protein_coding chr1:11345735 chr1:11345737 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_105936 0 0 1 0 1 Endoplasmic reticulum 0.500231643339548 0.500231640273562 0 0 hm5C_site_59081 DeepMRMD:0;iRNA_m5C:0 59082 chr19 41825598 41825598 1 + C T COAD 41825597 + 41825577 41825617 41 CGCACCCCAACCCACCAGCCCCCCAAGCCCGGGTCCCCCGG CGCACCCCAACCCACCAGCCCTCCAAGCCCGGGTCCCCCGG < 41bp 0.508955520038802 0.772527467521257 0.32155317 0.9616647 prediction 0.527143894964909 Functional Gain - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41825597 chr19:41825598 nonsynonymous SNV 0.025 0 22 hm5C_associated_SNPs_105937 0 0 0 0 0 chromatin 0.500231643921092 0.500231642671336 0.9233294 0 hm5C_site_59082 DeepMRMD:0.9233294;iRNA_m5C:0 59083 chr9 140135797 140135797 1 + C A rs556036177 140135793 + 140135773 140135813 41 GTCTACTTCCTCCTGCTTCCCCGCCGCCGCCGCCGCCATCA GTCTACTTCCTCCTGCTTCCCCGCAGCCGCCGCCGCCATCA < 41bp 0.411691195174464 0.763567468116158 0.123748094 0.18926468 prediction 0.527134936232316 Functional Gain - TUBB4B ENSG00000188229 UTR5 Human protein_coding chr9:140135793 chr9:140135797 . . 0 25 hm5C_associated_SNPs_105938 0 0 1 0 1 Cytosol 0.500231644115162 0.500231643919775 0 0 hm5C_site_59083 DeepMRMD:0;iRNA_m5C:0 59084 chrX 27766501 27766501 1 + T A LUAD 27766497 + 27766477 27766517 41 AGTGATTGCGGGCACATCTTCTTCTGGGAGAAATCATCCTG AGTGATTGCGGGCACATCTTCTTCAGGGAGAAATCATCCTG < 41bp 0.427974343076243 0.763561821040343 0.15188748 0.08838025 prediction 0.527123642080686 Functional Gain - DCAF8L2 ENSG00000189186 CDS Human protein_coding chrX:27766497 chrX:27766501 nonsynonymous SNV 0.983 2 25 hm5C_associated_SNPs_105939 0 0 0 0 0 exosome 0.500231643309788 0.50023164307966 0 0 hm5C_site_59084 DeepMRMD:0;iRNA_m5C:0 59085 chr13 31205414 31205414 1 + C A BRCA 31205410 + 31205390 31205430 41 GCAAATGTACATCATTTCCCCAGGCTTTATGTGTCCAGTGG GCAAATGTACATCATTTCCCCAGGATTTATGTGTCCAGTGG < 41bp 0.377328624014187 0.763549017153149 0.34441954 0.34634498 prediction 0.527098034306298 Functional Gain - USPL1 ENSG00000132952 CDS Human protein_coding chr13:31205410 chr13:31205414 nonsynonymous SNV 0.018 0 25 hm5C_associated_SNPs_105940 0 0 1 0 0 Cytosol 0.500231644763778 0.500232011118249 0 7.32708941297844e-07 hm5C_site_59085 DeepMRMD:0;iRNA_m5C:7.32708941297844e-07 59086 chrX 9862786 9862786 1 + C G LUAD 9862785 + 9862765 9862805 41 CCCGGTGACAGCGGCAAAGGCCCCAGGCCAGAGTACAATGC CCCGGTGACAGCGGCAAAGGCGCCAGGCCAGAGTACAATGC < 41bp 0.447537858566974 0.763541373176432 0.16347021 0.22733277 prediction 0.527082746352864 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9862785 chrX:9862786 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_105941 0 0 0 0 0 cytosol 0.500231651953826 0.500231593349953 0 0 hm5C_site_59086 DeepMRMD:0;iRNA_m5C:0 59087 chr2 235950322 235950322 1 + T C UCEC 235950320 + 235950300 235950340 41 CTTGCCACGACCTGGACTTGCTTGGCCAAAGCCCTGGTTGG CTTGCCACGACCTGGACTTGCTCGGCCAAAGCCCTGGTTGG < 41bp 0.503756723278322 0.767296823476189 0.38993993 0.41362292 prediction 0.527080200395736 Functional Gain - SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235950320 chr2:235950322 synonymous SNV . 0 23 hm5C_associated_SNPs_105942 0 0 1 0 0 cytosol 0.500231643921092 0.500231643921091 0 0 hm5C_site_59087 DeepMRMD:0;iRNA_m5C:0 59088 chr7 193291 193291 1 + C A UCEC 193287 + 193267 193307 41 TGCACATCGCCCTGGACCTGCTGCCCAGGCTGGAGCGACGC TGCACATCGCCCTGGACCTGCTGCACAGGCTGGAGCGACGC < 41bp 0.360753915862342 0.76352387674746 0.36870682 0.42460313 prediction 0.527047753494921 Functional Gain - FAM20C ENSG00000177706 CDS Human protein_coding chr7:193287 chr7:193291 nonsynonymous SNV 0.326 3 25 hm5C_associated_SNPs_105943 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921088 0 0 hm5C_site_59088 DeepMRMD:0;iRNA_m5C:0 59089 chr17 4995055 4995055 1 + C G rs141941256 4995054 + 4995034 4995074 41 TCACCCTCAAGTGAGAAAGACCGGGAGAATAATGAGAGTGA TCACCCTCAAGTGAGAAAGACGGGGAGAATAATGAGAGTGA < 41bp 0.463460681415021 0.763519893646057 0.34208015 0.90595204 prediction 0.527039787292114 Functional Gain - ZFP3 ENSG00000180787 CDS Human protein_coding chr17:4995054 chr17:4995055 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_105944 0 0 0 0 0 exosome 0.50023164389666 0.500231643921093 0.81190408 4.88655782504566e-11 hm5C_site_59089 DeepMRMD:0.81190408;iRNA_m5C:4.88655782504566e-11 59090 chr11 56113543 56113543 1 + C A LUSC 56113539 + 56113519 56113559 41 ATCATGTGGTAAAACACAATCACACGGCAGTGACCAAGGTG ATCATGTGGTAAAACACAATCACAAGGCAGTGACCAAGGTG < 41bp 0.394108642427065 0.763516529190923 0.10559195 0.14874747 prediction 0.527033058381847 Functional Gain - OR8K1 ENSG00000150261 CDS Human protein_coding chr11:56113539 chr11:56113543 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105945 0 0 0 0 0 unknown 0.500231652441527 0.500231643921092 0 0 hm5C_site_59090 DeepMRMD:0;iRNA_m5C:0 59091 chr11 71498591 71498591 1 + C A rs12270466 71498587 + 71498567 71498607 41 AGGCCCCGCCCCCGTCATGGCGCCCGAGGAGAACGCGGGGA AGGCCCCGCCCCCGTCATGGCGCCAGAGGAGAACGCGGGGA < 41bp 0.643740432223493 0.907253875145331 0.24733192 0.39479294 prediction 0.527026885843677 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71498587 chr11:71498591 synonymous SNV . 0 25 hm5C_associated_SNPs_105946 0 0 1 0 1 Ribosome 0.500231642840538 0.500231606085848 0 0 hm5C_site_59091 DeepMRMD:0;iRNA_m5C:0 59092 chr2 219301940 219301940 1 + C A BRCA 219301936 + 219301916 219301956 41 TACCTCAAGACCCATCCCAGCGGGCGTGACCCTGAGACCCC TACCTCAAGACCCATCCCAGCGGGAGTGACCCTGAGACCCC < 41bp 0.654324521045179 0.917837746344045 0.8783414 0.8898562 prediction 0.527026450597733 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219301936 chr2:219301940 nonsynonymous SNV 0.020 4 25 hm5C_associated_SNPs_105947 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0.0230295999999999 0 hm5C_site_59092 DeepMRMD:0.0230295999999999;iRNA_m5C:0 59093 chr5 76506843 76506843 1 + C G LUSC 76506839 + 76506819 76506859 41 CAGCTCGCCCCGCCAGACCACCAGCGTGTCGCAGGGCCCGG CAGCTCGCCCCGCCAGACCACCAGGGTGTCGCAGGGCCCGG < 41bp 0.496560155600392 0.763512863217631 0.24314362 0.50874394 prediction 0.527025726435262 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76506839 chr5:76506843 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_105948 0 0 0 0 0 Nucleus 0.500231646294815 0.500231643916945 0.01748788 0 hm5C_site_59093 DeepMRMD:0.01748788;iRNA_m5C:0 59094 chr17 7317995 7317995 1 + C G rs567010279 7317994 + 7317974 7318014 41 ACTCCCAGGTTTTCTCAGCACCGGGGACCAGGCTGCAAAAG ACTCCCAGGTTTTCTCAGCACGGGGGACCAGGCTGCAAAAG < 41bp 0.589921481345055 0.853430043060676 0.21432775 0.77207625 prediction 0.527017123431242 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7317994 chr17:7317995 synonymous SNV . 0 22 hm5C_associated_SNPs_105949 0 0 1 0 1 chromatin 0.500231643921094 0.50023164392106 0.5441525 0 hm5C_site_59094 DeepMRMD:0.5441525;iRNA_m5C:0 59095 chr2 239039151 239039151 1 + T A LUAD 239039147 + 239039127 239039167 41 TCTGGTGCAGCCACATCTCCCGCCTGGTACGCAGCCTGTCC TCTGGTGCAGCCACATCTCCCGCCAGGTACGCAGCCTGTCC < 41bp 0.589486569024453 0.852983403612424 0.057674944 0.28289503 prediction 0.526993669175943 Functional Gain - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239039147 chr2:239039151 nonsynonymous SNV 0.725 2 25 hm5C_associated_SNPs_105950 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0 4.44089209850063e-16 hm5C_site_59095 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 59096 chr1 64676469 64676469 1 + C A UCEC 64676465 + 64676445 64676485 41 CCCTGTATAGACTTTTTGGACAACCCTGAGAAGTGGAATAC CCCTGTATAGACTTTTTGGACAACACTGAGAAGTGGAATAC < 41bp 0.355399217162783 0.763496567067521 0.17839447 0.24530378 prediction 0.526993134135042 Functional Gain - UBE2U ENSG00000177414 CDS Human protein_coding chr1:64676465 chr1:64676469 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_105951 0 0 0 0 2 exosome 0.500231643990032 0.500231643921129 0 0 hm5C_site_59096 DeepMRMD:0;iRNA_m5C:0 59097 chr11 55861500 55861500 1 + C A UCEC 55861496 + 55861476 55861516 41 AGGCAGGCAGAAGGCCTTCTCCACCTGCGCATCCCACCTCA AGGCAGGCAGAAGGCCTTCTCCACATGCGCATCCCACCTCA < 41bp 0.644635417311578 0.908129302884084 0.09789711 0.34355122 prediction 0.526987771145011 Functional Gain - OR8I2 ENSG00000172154 CDS Human protein_coding chr11:55861496 chr11:55861500 synonymous SNV . 0 25 hm5C_associated_SNPs_105952 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0 1.33226762955019e-15 hm5C_site_59097 DeepMRMD:0;iRNA_m5C:1.33226762955019e-15 59098 chr17 42255693 42255693 1 + C G BLCA 42255689 + 42255669 42255709 41 AGCCGCTGCCGGCAGGGTGCCACCCGGCTGCCACTGCCCCC AGCCGCTGCCGGCAGGGTGCCACCGGGCTGCCACTGCCCCC < 41bp 0.522433281943419 0.78592115889327 0.20218834 0.40533182 prediction 0.526975753899703 Functional Gain - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42255689 chr17:42255693 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_105953 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643920787 0 0 hm5C_site_59098 DeepMRMD:0;iRNA_m5C:0 59099 chr5 137222944 137222944 1 + T A LUSC 137222940 + 137222920 137222960 41 TTCCAGCTCCTAAGCAGTTACGGGTTCGACCAACATTCAGC TTCCAGCTCCTAAGCAGTTACGGGATCGACCAACATTCAGC < 41bp 0.572553292147074 0.836033098586944 0.04654482 0.5001109 prediction 0.526959612879739 Functional Gain - MYOT ENSG00000120729 CDS Human protein_coding chr5:137222940 chr5:137222944 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_105954 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.00022180000000005 0 hm5C_site_59099 DeepMRMD:0.00022180000000005;iRNA_m5C:0 59100 chr11 94861790 94861790 1 + C G rs202118309 94861789 + 94861769 94861809 41 AATCTCCACAGCCTAATGGACCGGGCTTTGACCCCACAGTG AATCTCCACAGCCTAATGGACGGGGCTTTGACCCCACAGTG < 41bp 0.579889048218567 0.843366613657218 0.7923743 0.91456735 prediction 0.526955130877302 Functional Gain - ENDOD1 ENSG00000149218 CDS Human protein_coding chr11:94861789 chr11:94861790 nonsynonymous SNV 0.022 0 22 hm5C_associated_SNPs_105955 0 0 1 0 0 Ribosome 0.500231643920881 0.500231643921092 0.2443861 4.2366110619696e-13 hm5C_site_59100 DeepMRMD:0.2443861;iRNA_m5C:4.2366110619696e-13 59101 chr9 138441760 138441760 1 + C A rs7859414 138441756 + 138441736 138441776 41 GGACCACCTGGACCTACCCTCCAGCCATGACCCTTCCCTGC GGACCACCTGGACCTACCCTCCAGACATGACCCTTCCCTGC < 41bp 0.385843669609467 0.763472641228086 0.29847735 0.30813217 prediction 0.526945282456171 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138441756 chr9:138441760 nonsynonymous SNV 0.019 1 25 hm5C_associated_SNPs_105956 0 0 0 0 1 unknown 0.500231643921093 0.500231643921092 0 0 hm5C_site_59101 DeepMRMD:0;iRNA_m5C:0 59102 chr20 4680118 4680118 1 + T C rs62637686 4680116 + 4680096 4680136 41 ATGGTGGTGGCTGGGGACAGCCTCATGGTGGTGGCTGGGGT ATGGTGGTGGCTGGGGACAGCCCCATGGTGGTGGCTGGGGT < 41bp 0.496695971338244 0.763437848261705 0.17577133 0.24634749 prediction 0.526875696523411 Functional Gain - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680116 chr20:4680118 synonymous SNV . 0 23 hm5C_associated_SNPs_105957 1 0 1 0 1 Ribosome 0.500231643920033 0.500231643921093 0 2.11941575400942e-12 hm5C_site_59102 DeepMRMD:0;iRNA_m5C:2.11941575400942e-12 Genetic prion diseases Genetic prion diseases 59103 chr11 113651176 113651176 1 + T A LUAD 113651172 + 113651152 113651192 41 AGGAGTCAGATGGCTCCTTCCACCTCATGCTAAGACCTAGG AGGAGTCAGATGGCTCCTTCCACCACATGCTAAGACCTAGG < 41bp 0.461027974556503 0.763437544336665 0.18805337 0.15400755 prediction 0.526875088673329 Functional Gain - CLDN25 ENSG00000228607 CDS Human protein_coding chr11:113651172 chr11:113651176 nonsynonymous SNV 0.022 1 25 hm5C_associated_SNPs_105958 0 0 0 0 0 unknown 0.500231643934105 0.500231644243105 0 6.17998541230236e-10 hm5C_site_59103 DeepMRMD:0;iRNA_m5C:6.17998541230236e-10 59104 chr16 58546434 58546434 1 + C G rs3803581 58546430 + 58546410 58546450 41 GTGGTGTTTCAGGCAGAGCTCTGGCCAGGCTGTGCCAGTGT GTGGTGTTTCAGGCAGAGCTCTGGGCAGGCTGTGCCAGTGT < 41bp 0.480326862255712 0.76343155376381 0.3646574 0.8669048 prediction 0.52686310752762 Functional Gain - NDRG4 ENSG00000103034 UTR3 Human protein_coding chr16:58546430 chr16:58546434 . . 0 25 hm5C_associated_SNPs_105959 0 0 0 0 0 Exosome 0.500290795982837 0.500231489112218 0.7338096 0 hm5C_site_59104 DeepMRMD:0.7338096;iRNA_m5C:0 59105 chr16 85701871 85701871 1 + C T COAD 85701870 + 85701850 85701890 41 CACAATGGGCAGCAGGAGCCCCCCACTGCAAGGAAGGGCCC CACAATGGGCAGCAGGAGCCCTCCACTGCAAGGAAGGGCCC < 41bp 0.501535665146018 0.76496296797663 0.06231147 0.916232 prediction 0.526854605661224 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85701870 chr16:85701871 nonsynonymous SNV 0.100 0 22 hm5C_associated_SNPs_105960 0 0 0 0 0 Cytosol 0.50023164392155 0.500231643921222 0.832464 0 hm5C_site_59105 DeepMRMD:0.832464;iRNA_m5C:0 59106 chr3 50620517 50620517 1 + T A rs188127329 50620513 + 50620493 50620533 41 CTTGAGAGATGTGCCCACTGCCCGTGCAGCCTCCTTCAGCC CTTGAGAGATGTGCCCACTGCCCGAGCAGCCTCCTTCAGCC < 41bp 0.518882155080414 0.78230730963734 0.15154651 0.36733115 prediction 0.526850309113852 Functional Gain - HEMK1 ENSG00000114735 UTR3 Human protein_coding chr3:50620513 chr3:50620517 . . 0 25 hm5C_associated_SNPs_105961 0 0 0 0 0 Ribosome 0.500231643999515 0.5002316438821 0 0 hm5C_site_59106 DeepMRMD:0;iRNA_m5C:0 59107 chrX 12735195 12735195 1 + C A LGG 12735191 + 12735171 12735211 41 CTGGATAATGCCGTCGTCTCCACGCTGGGAGCTCTAGAGGC CTGGATAATGCCGTCGTCTCCACGATGGGAGCTCTAGAGGC < 41bp 0.399821411585642 0.763423114372845 0.8676912 0.5824135 prediction 0.526846228745689 Functional Gain - FRMPD4 ENSG00000169933 CDS Human protein_coding chrX:12735191 chrX:12735195 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_105962 0 0 1 0 1 exosome 0.500231643921092 0.500231643866763 0 0 hm5C_site_59107 DeepMRMD:0;iRNA_m5C:0 Heel bone mineral density 59108 chr19 10157078 10157078 1 + C G rs374079030 10157077 + 10157057 10157097 41 AAGTGCTGTGAGGCTGGGCTCCGGGAGAGCCCAGTGGGGCT AAGTGCTGTGAGGCTGGGCTCGGGGAGAGCCCAGTGGGGCT < 41bp 0.555546847605922 0.818958931526666 0.88281834 0.9164377 prediction 0.526824167841489 Functional Gain - C3P1 ENSG00000167798 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:10157077 chr19:10157078 . . 0 22 hm5C_associated_SNPs_105963 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.06723872 2.22044604925031e-16 hm5C_site_59108 DeepMRMD:0.06723872;iRNA_m5C:2.22044604925031e-16 59109 chr16 58426335 58426335 1 + C A rs537549248 58426331 + 58426311 58426351 41 TGCTTCTGCCTGGGCGGTACCGCCCGAATTGACTGCTCCTG TGCTTCTGCCTGGGCGGTACCGCCAGAATTGACTGCTCCTG < 41bp 0.645380040333786 0.908780322850116 0.29311264 0.7990119 prediction 0.52680056503266 Functional Gain - GINS3 ENSG00000181938 UTR5 Human protein_coding chr16:58426331 chr16:58426335 . . 0 25 hm5C_associated_SNPs_105964 0 0 0 0 0 Ribosome 0.500231643913304 0.500230179072118 0.5980238 0 hm5C_site_59109 DeepMRMD:0.5980238;iRNA_m5C:0 59110 chr19 17875233 17875233 1 + C G rs145154295 17875229 + 17875209 17875249 41 AAGGCGATGGCGAAACTCTCCAAGCTGGCCAGCAACGGGAC AAGGCGATGGCGAAACTCTCCAAGGTGGCCAGCAACGGGAC < 41bp 0.548139870802683 0.811532502171239 0.37643588 0.86531824 prediction 0.526785262737113 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17875229 chr19:17875233 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_105965 0 0 1 0 2 Cytosol 0.500231645735545 0.500231643921093 0.73063648 0 hm5C_site_59110 DeepMRMD:0.73063648;iRNA_m5C:0 59111 chr12 50367274 50367274 1 + C A LUAD 50367270 + 50367250 50367290 41 CCGTGCTGTGGCCTATGTGGCTGCCCAGCTGGTGGGGGCCA CCGTGCTGTGGCCTATGTGGCTGCACAGCTGGTGGGGGCCA < 41bp 0.353436788110914 0.763379018944948 0.13933086 0.19898856 prediction 0.526758037889896 Functional Gain - AQP6 ENSG00000086159 CDS Human protein_coding chr12:50367270 chr12:50367274 synonymous SNV . 0 25 hm5C_associated_SNPs_105966 0 0 0 0 1 Ribosome 0.500231650811622 0.501093259309911 0 0.00172321699657907 hm5C_site_59111 DeepMRMD:0;iRNA_m5C:0.00172321699657907 59112 chr6 160221773 160221773 1 + C G SKCM 160221772 + 160221752 160221792 41 GTGCTGGCGATGTTCTGCACCCGAGGACTGCTATTTTTTGC GTGCTGGCGATGTTCTGCACCGGAGGACTGCTATTTTTTGC < 41bp 0.450516387859965 0.763370291659401 0.33077526 0.82465196 prediction 0.526740583318803 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160221772 chr6:160221773 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_105967 0 0 1 0 2 exosome 0.500240421851317 0.500231678635313 0.64930392 0 hm5C_site_59112 DeepMRMD:0.64930392;iRNA_m5C:0 59113 chr7 99661799 99661799 1 + C A GBM 99661795 + 99661775 99661815 41 CCTCACCCTCCACTACAGAACACACTTGGTGGACCGGCCCT CCTCACCCTCCACTACAGAACACAATTGGTGGACCGGCCCT < 41bp 0.359408984191013 0.763368996459964 0.07997203 0.10956004 prediction 0.526737992919928 Functional Gain - ZSCAN21 ENSG00000166529 CDS Human protein_coding chr7:99661795 chr7:99661799 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_105968 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_59113 DeepMRMD:0;iRNA_m5C:0 59114 chr5 1242943 1242943 1 + C G STAD 1242942 + 1242922 1242962 41 AAGAGGGTGGCCCAGCTCCCCCTGAAGGCCTGCCTCCTGGA AAGAGGGTGGCCCAGCTCCCCGTGAAGGCCTGCCTCCTGGA < 41bp 0.580344503909912 0.843707937736355 0.059267968 0.28909165 prediction 0.526726867652887 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1242942 chr5:1242943 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_105969 0 0 0 0 1 unknown 0.500231643921076 0.500231643920306 0 0 hm5C_site_59114 DeepMRMD:0;iRNA_m5C:0 59115 chr13 70681734 70681734 1 + G T LUSC 70681738 - 70681718 70681758 41 CGTCTCCTTCCACCGGCGGCCCGGCGGGGGGAGGCTGCCTG CGTCTCCTTCCACCGGCGGCCCGGAGGGGGGAGGCTGCCTG < 41bp 0.393460439804427 0.763361712237783 0.49727607 0.82846737 prediction 0.526723424475567 Functional Gain - KLHL1 ENSG00000150361 CDS Human protein_coding chr13:70681738 chr13:70681734 nonsynonymous SNV 0.867 0 25 hm5C_associated_SNPs_105970 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.65693474 0 hm5C_site_59115 DeepMRMD:0.65693474;iRNA_m5C:0 59116 chr1 32098083 32098083 1 + C A ESCA 32098079 + 32098059 32098099 41 TCTGTCCTGCCCATCGTGCCCCGGCCATGACCCGCACCTTG TCTGTCCTGCCCATCGTGCCCCGGACATGACCCGCACCTTG < 41bp 0.39257153972587 0.763349650601313 0.59031993 0.78721565 prediction 0.526699301202626 Functional Gain - PEF1 ENSG00000121764 CDS Human protein_coding chr1:32098079 chr1:32098083 synonymous SNV . 0 25 hm5C_associated_SNPs_105971 0 0 0 0 0 Ribosome 0.500231439786347 0.500230298158935 0.39379144 0 hm5C_site_59116 DeepMRMD:0.39379144;iRNA_m5C:0 59117 chr14 19574244 19574244 1 + C G rs199722113 19574240 + 19574220 19574260 41 ATATGGGATTCCCAGAAAACCTGCCTAACGGTGCCACTGCT ATATGGGATTCCCAGAAAACCTGCGTAACGGTGCCACTGCT < 41bp 0.472821538236747 0.763348028672967 0.19638127 0.24396959 prediction 0.526696057345934 Functional Gain - POTEG ENSG00000222036 CDS Human protein_coding chr14:19574240 chr14:19574244 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_105972 0 0 0 2 1 exosome 0.500231643918662 0.500231643869366 0 0 hm5C_site_59117 DeepMRMD:0;iRNA_m5C:0 59118 chr16 682839 682839 1 + C G rs370646237 682838 + 682818 682858 41 CAACCGCTGCTATATGGACGCCGAGGCCTGCCTGCGGGGCC CAACCGCTGCTATATGGACGCGGAGGCCTGCCTGCGGGGCC < 41bp 0.582514754010548 0.845845845778712 0.88264334 0.94651 prediction 0.526662183536328 Functional Gain - WFIKKN1 ENSG00000127578 CDS Human protein_coding chr16:682838 chr16:682839 synonymous SNV . 0 22 hm5C_associated_SNPs_105973 0 0 0 0 0 exosome 0.500231643921094 0.500231643921118 0.12773332 4.9293902293357e-14 hm5C_site_59118 DeepMRMD:0.12773332;iRNA_m5C:4.9293902293357e-14 59119 chr4 169799163 169799163 1 + C G rs550499593 169799159 + 169799139 169799179 41 GGGCCCGCGTCGGGCCACGGCACGCCGGCCTCCAGCCCCAG GGGCCCGCGTCGGGCCACGGCACGGCGGCCTCCAGCCCCAG < 41bp 0.510085154436046 0.773409871560335 0.17470726 0.47191158 prediction 0.526649434248579 Functional Gain - PALLD ENSG00000129116 CDS Human protein_coding chr4:169799159 chr4:169799163 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_105974 1 0 0 0 0 Cytosol 0.500231643947486 0.500231549217989 0 0 hm5C_site_59119 DeepMRMD:0;iRNA_m5C:0 Pancreatic adenocarcinoma Pancreatic adenocarcinoma 59120 chr1 64680517 64680517 1 + T G BLCA 64680514 + 64680494 64680534 41 ATAGGTTATGCTTTCTAATCCAGTGCTAGAGAATCCAGTGA ATAGGTTATGCTTTCTAATCCAGGGCTAGAGAATCCAGTGA < 41bp 0.382913478085085 0.763320782899374 0.15126678 0.39601558 prediction 0.526641565798749 Functional Gain - UBE2U ENSG00000177414 CDS Human protein_coding chr1:64680514 chr1:64680517 nonsynonymous SNV 0.396 0 24 hm5C_associated_SNPs_105975 0 0 0 0 2 exosome 0.500231605314111 0.500231643921455 0 7.72146870886559e-08 hm5C_site_59120 DeepMRMD:0;iRNA_m5C:7.72146870886559e-08 59121 chr17 30781528 30781528 1 + T C STAD 30781526 + 30781506 30781546 41 CCTACAGAGCTTGGAGGACTCCTGAAGTATGTACGACCCTT CCTACAGAGCTTGGAGGACTCCCGAAGTATGTACGACCCTT < 41bp 0.526824111448971 0.790125119042577 0.62878454 0.58197784 prediction 0.526602015187212 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30781526 chr17:30781528 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_105976 0 0 1 0 1 Ribosome 0.500231643921084 0.500231643921092 0 1.62092561595273e-14 hm5C_site_59121 DeepMRMD:0;iRNA_m5C:1.62092561595273e-14 59122 chr11 5776890 5776890 1 + T G HNSC 5776888 + 5776868 5776908 41 AAACAGATACGAGACTGTGTCATAAGGATCCTTTCAGGTTC AAACAGATACGAGACTGTGTCAGAAGGATCCTTTCAGGTTC < 41bp 0.449285634934303 0.763295504632961 0.6746916 0.911935 prediction 0.526591009265922 Functional Gain - OR52N4 ENSG00000181074 CDS Human protein_coding chr11:5776888 chr11:5776890 nonsynonymous SNV 0.244 1 23 hm5C_associated_SNPs_105977 0 0 0 0 0 exosome 0.500231643893972 0.500231643915933 0.4744868 4.39235314786401e-11 hm5C_site_59122 DeepMRMD:0.4744868;iRNA_m5C:4.39235314786401e-11 59123 chr3 44700505 44700505 1 + T A COAD 44700501 + 44700481 44700521 41 CTGTTAAAAATCCAAAAACCCAGCTTGGACAAAAGCCTTTT CTGTTAAAAATCCAAAAACCCAGCATGGACAAAAGCCTTTT < 41bp 0.447623655562255 0.763291078525908 0.2422202 0.19249535 prediction 0.526582157051816 Functional Gain - ZNF35 ENSG00000169981 CDS Human protein_coding chr3:44700501 chr3:44700505 nonsynonymous SNV 0.778 1 25 hm5C_associated_SNPs_105978 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59123 DeepMRMD:0;iRNA_m5C:0 59124 chr12 55968676 55968676 1 + C G rs56012703 55968672 + 55968652 55968692 41 ATGGCTATTATACCAACAATCACCCTGATGAGTCAGCAGGA ATGGCTATTATACCAACAATCACCGTGATGAGTCAGCAGGA < 41bp 0.527120545499458 0.790409517634351 0.1413759 0.23901546 prediction 0.526577944269785 Functional Gain - OR2AP1 ENSG00000179615 CDS Human protein_coding chr12:55968672 chr12:55968676 nonsynonymous SNV 0.288 0 25 hm5C_associated_SNPs_105979 0 0 0 0 0 unknown 0.50023164391436 0.500231684170599 0 8.05124780178801e-08 hm5C_site_59124 DeepMRMD:0;iRNA_m5C:8.05124780178801e-08 59125 chr7 151575754 151575754 1 + C G rs183168820 151575753 + 151575733 151575773 41 ACCAAGCAGCCATCCTGGCCCCACAGGTGTGGGACTTCTGG ACCAAGCAGCCATCCTGGCCCGACAGGTGTGGGACTTCTGG < 41bp 0.546417117957342 0.809698331675388 0.10541439 0.19457653 prediction 0.526562427436092 Functional Gain - PRKAG2-AS1 ENSG00000239911 ncRNA_exonic Human antisense chr7:151575753 chr7:151575754 . . 0 22 hm5C_associated_SNPs_105980 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59125 DeepMRMD:0;iRNA_m5C:0 59126 chr7 143632476 143632476 1 + C A HNSC 143632472 + 143632452 143632492 41 TGTCTCATTGTCCTTCTGATCAGACTGGACAGCCGACTCCA TGTCTCATTGTCCTTCTGATCAGAATGGACAGCCGACTCCA < 41bp 0.639441908802389 0.902722144682016 0.74515545 0.8935982 prediction 0.526560471759255 Functional Gain - OR2F2 ENSG00000221910 CDS Human protein_coding chr7:143632472 chr7:143632476 nonsynonymous SNV 0.907 2 25 hm5C_associated_SNPs_105981 0 0 0 0 0 unknown 0.500231620492284 0.500231627348425 0.2968855 1.37122821985969e-08 hm5C_site_59126 DeepMRMD:0.2968855;iRNA_m5C:1.37122821985969e-08 59127 chr10 86012658 86012658 1 + T C UCEC 86012656 + 86012636 86012676 41 GCCGTCTCTCTGGTGCTCTTCGTGTGGCTGTCTTCTGCCTT GCCGTCTCTCTGGTGCTCTTCGCGTGGCTGTCTTCTGCCTT < 41bp 0.49703702487948 0.763278534442088 0.664932 0.68607926 prediction 0.526557068884176 Functional Gain - RGR ENSG00000148604 CDS Human protein_coding chr10:86012656 chr10:86012658 nonsynonymous SNV 0.995 0 23 hm5C_associated_SNPs_105982 0 0 0 0 1 unknown 0.500231644064719 0.500231692009736 0.04229452 9.5890035023416e-08 hm5C_site_59127 DeepMRMD:0.04229452;iRNA_m5C:9.5890035023416e-08 59128 chr17 77709217 77709217 1 + C A HNSC 77709213 + 77709193 77709233 41 ACCGTGGACAAACGGGCTGGCGACCTGGTTGAATTCCACAA ACCGTGGACAAACGGGCTGGCGACATGGTTGAATTCCACAA < 41bp 0.341388231055345 0.763258926727306 0.095318645 0.21754754 prediction 0.526517853454611 Functional Gain - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77709213 chr17:77709217 nonsynonymous SNV 0.839 2 25 hm5C_associated_SNPs_105983 0 0 0 0 0 exosome 0.500231643921093 0.500231643878018 0 0 hm5C_site_59128 DeepMRMD:0;iRNA_m5C:0 59129 chr18 77137316 77137316 1 + C A THCA 77137312 + 77137292 77137332 41 CGATCACCGTGGTCAGCTGCCTCCCGCTGTATGTCCTCAAG CGATCACCGTGGTCAGCTGCCTCCAGCTGTATGTCCTCAAG < 41bp 0.372930044115047 0.763252215705601 0.05790767 0.90541434 prediction 0.526504431411203 Functional Gain - ATP9B ENSG00000166377 CDS Human protein_coding chr18:77137312 chr18:77137316 nonsynonymous SNV 0.559 3 25 hm5C_associated_SNPs_105984 0 0 0 0 1 Endoplasmic reticulum 0.500231643921093 0.50023164554705 0.81082868 3.25191495953447e-09 hm5C_site_59129 DeepMRMD:0.81082868;iRNA_m5C:3.25191495953447e-09 59130 chr19 47844952 47844952 1 + T A SKCM 47844948 + 47844928 47844968 41 TCCTGTATTTTGGGAGGGCTCAACTCCGCCGGTCACTGCCA TCCTGTATTTTGGGAGGGCTCAACACCGCCGGTCACTGCCA < 41bp 0.584744161441952 0.847995544461608 0.50002927 0.46294257 prediction 0.526502766039311 Functional Gain - C5AR2 ENSG00000134830 CDS Human protein_coding chr19:47844948 chr19:47844952 nonsynonymous SNV 0.008 2 25 hm5C_associated_SNPs_105985 0 0 0 0 0 exosome 0.500231643921087 0.500231643921083 0 0 hm5C_site_59130 DeepMRMD:0;iRNA_m5C:0 59131 chr7 100263784 100263784 1 + C G rs10953300 100263783 + 100263763 100263803 41 TACCTGGGCCTCCTAAACTGCCGGGATTACAGGCGTGAGCC TACCTGGGCCTCCTAAACTGCGGGGATTACAGGCGTGAGCC < 41bp 0.473599352353076 0.763246858695622 0.90755975 0.91785514 prediction 0.526493717391244 Functional Gain - LOC105375429 ENSG00000077080;ENSG00000172354 intergenic Human other chr7:100263783 chr7:100263784 . . 0 22 hm5C_associated_SNPs_105986 0 0 0 0 1 unknown 0.500231643921111 0.500231643921092 0.02059078 0 hm5C_site_59131 DeepMRMD:0.02059078;iRNA_m5C:0 59132 chr2 109124356 109124356 1 + C A rs13386343 109124352 + 109124332 109124372 41 AACCACCAGGAATGAATTCACTCCCCACTTCTCTGGAACCT AACCACCAGGAATGAATTCACTCCACACTTCTCTGGAACCT < 41bp 0.360210642941954 0.76323494947684 0.19584605 0.92538 prediction 0.52646989895368 Functional Gain - GCC2-AS1 ENSG00000214184 ncRNA_intronic Human antisense chr2:109124352 chr2:109124356 . . 0 25 hm5C_associated_SNPs_105987 0 0 0 1 0 unknown 0.500231643980709 0.500231660402969 0.85076 3.28445193265026e-08 hm5C_site_59132 DeepMRMD:0.85076;iRNA_m5C:3.28445193265026e-08 59133 chr18 29125751 29125751 1 + A G UCEC 29125753 - 29125733 29125773 41 ATTCAGCGATTCAGTTTCTTCCTGAGAATAAACCAGAAGGC ATTCAGCGATTCAGTTTCTTCCCGAGAATAAACCAGAAGGC < 41bp 0.516747259679252 0.779978449895227 0.13386795 0.27160907 prediction 0.526462380431949 Functional Gain - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29125753 chr18:29125751 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_105988 0 0 0 0 0 Endoplasmic reticulum 0.500231643931194 0.500231644050904 0 2.39420039349625e-10 hm5C_site_59133 DeepMRMD:0;iRNA_m5C:2.39420039349625e-10 59134 chr7 19184555 19184555 1 + C A LUAD 19184551 + 19184531 19184571 41 AAGGAGATATAGACGATGGCCAGGCGGAGGGTCTCGATCCG AAGGAGATATAGACGATGGCCAGGAGGAGGGTCTCGATCCG < 41bp 0.636230578858031 0.899454190459605 0.8867936 0.9040452 prediction 0.526447223203147 Functional Gain - FERD3L ENSG00000146618 CDS Human protein_coding chr7:19184551 chr7:19184555 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_105989 0 0 0 0 1 unknown 0.500231643920291 0.500231642668182 0.0345032000000001 0 hm5C_site_59134 DeepMRMD:0.0345032000000001;iRNA_m5C:0 59135 chr1 154960749 154960749 1 + C T SKCM 154960748 + 154960728 154960768 41 CTCACAGCAGGGGGCATCGGCCCCACTCATGATGATGTGAC CTCACAGCAGGGGGCATCGGCTCCACTCATGATGATGTGAC < 41bp 0.505314014523875 0.768535226902582 0.03499213 0.478466 prediction 0.526442424757414 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154960748 chr1:154960749 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_105990 0 0 1 0 0 Cytosol 0.500231643921095 0.500231643922717 0 3.24318349953501e-12 hm5C_site_59135 DeepMRMD:0;iRNA_m5C:3.24318349953501e-12 59136 chr17 76137198 76137198 1 + T A rs369764 76137194 + 76137174 76137214 41 CCAGCGGCGCGGAGCTGTAACCCCTACCCCTGCCTCCCCGA CCAGCGGCGCGGAGCTGTAACCCCAACCCCTGCCTCCCCGA < 41bp 0.453407686567829 0.763220223915071 0.19397753 0.86245775 prediction 0.526440447830143 Functional Gain - TMC8 ENSG00000167895 UTR3 Human protein_coding chr17:76137194 chr17:76137198 . . 0 25 hm5C_associated_SNPs_105991 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0.7249155 0 hm5C_site_59136 DeepMRMD:0.7249155;iRNA_m5C:0 59137 chr9 22451231 22451231 1 + C A COAD 22451227 + 22451207 22451247 41 CCAACAAGCCTGATAGTATCCTGTCTCCTCATCCTGGAGAG CCAACAAGCCTGATAGTATCCTGTATCCTCATCCTGGAGAG < 41bp 0.356012233909342 0.763218145542555 0.057370067 0.06323978 prediction 0.526436291085111 Functional Gain - DMRTA1 ENSG00000176399 CDS Human protein_coding chr9:22451227 chr9:22451231 nonsynonymous SNV 0.030 3 25 hm5C_associated_SNPs_105992 0 0 0 0 0 exosome 0.500231643919763 0.500231643921092 0 2.65831801016247e-12 hm5C_site_59137 DeepMRMD:0;iRNA_m5C:2.65831801016247e-12 59138 chr7 2394536 2394536 1 + C A rs546597150 2394532 + 2394512 2394552 41 AAGCGCGGCGGCCGCGGAGCCCTGCGAGTAGGCAGCGTTGG AAGCGCGGCGGCCGCGGAGCCCTGAGAGTAGGCAGCGTTGG < 41bp 0.51734147819849 0.780559439522476 0.35908535 0.5091204 prediction 0.526435922647972 Functional Gain - EIF3B ENSG00000106263 UTR5 Human protein_coding chr7:2394532 chr7:2394536 . . 0 25 hm5C_associated_SNPs_105993 0 0 1 0 0 Ribosome 0.500231643872585 0.500231643910464 0.0182408000000001 7.57580664867419e-11 hm5C_site_59138 DeepMRMD:0.0182408000000001;iRNA_m5C:7.57580664867419e-11 59139 chr17 7560288 7560288 1 + C G rs556515657 7560284 + 7560264 7560304 41 GTTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTCAGT GTTGGGATTACAGGCGTGAGCCACGGCGCCCGGCCTTCAGT < 41bp 0.487485542213332 0.763203484368205 0.09486523 0.22829837 prediction 0.526406968736409 Functional Gain - ATP1B2 ENSG00000129244 UTR3 Human protein_coding chr17:7560284 chr17:7560288 . . 0 25 hm5C_associated_SNPs_105994 0 0 0 0 0 Nucleus 0.500231643923579 0.500231643921136 0 0 hm5C_site_59139 DeepMRMD:0;iRNA_m5C:0 59140 chr20 30607199 30607199 1 + C A COAD 30607195 + 30607175 30607215 41 CCTACTGCAACCTGGTCATCCTGGCTGTAGCCAACAGGGTG CCTACTGCAACCTGGTCATCCTGGATGTAGCCAACAGGGTG < 41bp 0.651904980479242 0.915107139825185 0.2156435 0.24737608 prediction 0.526404318691885 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30607195 chr20:30607199 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_105995 0 0 0 0 0 exosome 0.500231643600052 0.500231641016024 0 0 hm5C_site_59140 DeepMRMD:0;iRNA_m5C:0 59141 chr6 110300979 110300979 1 + C G PRAD 110300975 + 110300955 110300995 41 GCCGCCTGCAGCGTGGTGCGCCCGCTGGCGCGCAGCCACGT GCCGCCTGCAGCGTGGTGCGCCCGGTGGCGCGCAGCCACGT < 41bp 0.53165457258569 0.794854891486536 0.3214166 0.43591326 prediction 0.526400637801692 Functional Gain - GPR6 ENSG00000146360 CDS Human protein_coding chr6:110300975 chr6:110300979 nonsynonymous SNV 0.996 2 25 hm5C_associated_SNPs_105996 0 0 0 0 0 unknown 0.500231916701336 0.500232074942536 0 3.16482400064544e-07 hm5C_site_59141 DeepMRMD:0;iRNA_m5C:3.16482400064544e-07 59142 chr17 42635220 42635220 1 + C G OV 42635216 + 42635196 42635236 41 GCACGGACATCGCCTACAACCAGACCATCATGCCCAACCTT GCACGGACATCGCCTACAACCAGAGCATCATGCCCAACCTT < 41bp 0.527276222666736 0.790475586077412 0.41259176 0.91715246 prediction 0.526398726821352 Functional Gain - FZD2 ENSG00000180340 CDS Human protein_coding chr17:42635216 chr17:42635220 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_105997 0 0 1 0 0 exosome 0.500231643921093 0.500231643920885 0.83430492 0 hm5C_site_59142 DeepMRMD:0.83430492;iRNA_m5C:0 59143 chr10 135054153 135054153 1 + T G rs150261412 135054150 + 135054130 135054170 41 CTCCGCCTCCTGGGTTCAAGCGATTCTCCAGCCTCAGCCTC CTCCGCCTCCTGGGTTCAAGCGAGTCTCCAGCCTCAGCCTC < 41bp 0.392150454394553 0.763198893634447 0.09062311 0.44726124 prediction 0.526397787268894 Functional Gain - VENTX ENSG00000151650 UTR3 Human protein_coding chr10:135054150 chr10:135054153 . . 0 24 hm5C_associated_SNPs_105998 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_59143 DeepMRMD:0;iRNA_m5C:0 59144 chr15 69652438 69652438 1 + C T SKCM 69652437 + 69652417 69652457 41 AAGATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGA AAGATGCTGAGCCTGAAGCTCTCCAGGCTGTTTAGCATAGA < 41bp 0.511589950095203 0.774754148594326 0.013529211 0.9442109 prediction 0.526328396998246 Functional Gain - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69652437 chr15:69652438 nonsynonymous SNV 0.619 4 22 hm5C_associated_SNPs_105999 0 0 0 0 1 Cytosol 0.500231642192004 0.500230696513615 0.8884218 0 hm5C_site_59144 DeepMRMD:0.8884218;iRNA_m5C:0 59145 chr1 238090742 238090742 1 + T A GBM 238090738 + 238090718 238090758 41 GAGCGTGGCTACAGCTTCACCACCTCGGCCCAGCGGGAGAT GAGCGTGGCTACAGCTTCACCACCACGGCCCAGCGGGAGAT < 41bp 0.455970234954866 0.763162443795683 0.06864196 0.065616846 prediction 0.526324887591366 Functional Gain - LOC100130331 ENSG00000237250;ENSG00000243781 ncRNA_exonic Human other chr1:238090738 chr1:238090742 . . 0 25 hm5C_associated_SNPs_106000 0 0 0 0 0 unknown 0.500231643894894 0.500231643926284 0 6.27802254626886e-11 hm5C_site_59145 DeepMRMD:0;iRNA_m5C:6.27802254626886e-11 59146 chr12 106751671 106751671 1 + C G rs144172154 106751667 + 106751647 106751687 41 TCGTGAGCAGCATGGACGTGCTAGCGGAGGAGTTTGGGAAC TCGTGAGCAGCATGGACGTGCTAGGGGAGGAGTTTGGGAAC < 41bp 0.535784337592804 0.798929351758455 0.27727136 0.44236413 prediction 0.526290028331302 Functional Gain - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106751667 chr12:106751671 nonsynonymous SNV 0.798 0 25 hm5C_associated_SNPs_106001 0 0 1 0 1 chromatin 0.50023164555494 0.500231644233586 0 0 hm5C_site_59146 DeepMRMD:0;iRNA_m5C:0 59147 chr17 56234927 56234927 1 + T G rs56207505 56234925 + 56234905 56234945 41 ACGGAGACTCAGGTCAAAATCTTGTTCCAGAACCGAAGGGC ACGGAGACTCAGGTCAAAATCTGGTTCCAGAACCGAAGGGC < 41bp 0.502134455933736 0.765278404236768 0.25604472 0.43679193 prediction 0.526287896606064 Functional Gain - MSX2P1 ENSG00000229590 ncRNA_exonic Human processed_pseudogene chr17:56234925 chr17:56234927 . . 0 23 hm5C_associated_SNPs_106002 0 0 0 0 0 unknown 0.5002316835899 0.500231732781157 0 9.83825134692751e-08 hm5C_site_59147 DeepMRMD:0;iRNA_m5C:9.83825134692751e-08 59148 chr22 45255655 45255655 1 + C A rs114279873 45255651 + 45255631 45255671 41 GTCACTGGCTGCCGCCAGATCTTACGGAGCCTCCCAGAGCA GTCACTGGCTGCCGCCAGATCTTAAGGAGCCTCCCAGAGCA < 41bp 0.347297880053911 0.763139439856803 0.1877181 0.22626936 prediction 0.526278879713605 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45255651 chr22:45255655 synonymous SNV . 0 25 hm5C_associated_SNPs_106003 0 0 1 2 3 unknown 0.500231643921091 0.500231643921092 0 3.77475828372553e-15 hm5C_site_59148 DeepMRMD:0;iRNA_m5C:3.77475828372553e-15 59149 chr6 97000466 97000466 1 + C G HNSC 97000462 + 97000442 97000482 41 AGTCCTGTTGTTTCAGTTTTCAACCCACAGCATGCTCCATG AGTCCTGTTGTTTCAGTTTTCAACGCACAGCATGCTCCATG < 41bp 0.492937822574062 0.763137700760409 0.029007971 0.16698796 prediction 0.526275401520818 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:97000462 chr6:97000466 synonymous SNV . 0 25 hm5C_associated_SNPs_106004 0 0 1 0 1 Endoplasmic reticulum 0.500231554255648 0.500235250555804 0 7.39260031079603e-06 hm5C_site_59149 DeepMRMD:0;iRNA_m5C:7.39260031079603e-06 59150 chr8 22876345 22876345 1 + C G rs78010247 22876341 + 22876321 22876361 41 TAGTGAAAGGCCACAGGACACAGCCTTATTACTGCTGGGGT TAGTGAAAGGCCACAGGACACAGCGTTATTACTGCTGGGGT < 41bp 0.478878673500737 0.763130744743685 0.0133321285 0.08197051 prediction 0.52626148948737 Functional Gain - RHOBTB2 ENSG00000245025 ncRNA_intronic Human antisense chr8:22876341 chr8:22876345 . . 0 25 hm5C_associated_SNPs_106005 0 0 1 0 0 cytosol 0.500231643918652 0.500231643559825 0 0 hm5C_site_59150 DeepMRMD:0;iRNA_m5C:0 59151 chr19 1258042 1258042 1 + C G rs567549081 1258038 + 1258018 1258058 41 GGAAGGGAGAGGGGAACTACCCCCCCAGCCTGCCCTCCGCC GGAAGGGAGAGGGGAACTACCCCCGCAGCCTGCCCTCCGCC < 41bp 0.53425648678651 0.797379579989408 0.4607877 0.87364876 prediction 0.526246186405796 Functional Gain - MIDN ENSG00000167470 UTR3 Human protein_coding chr19:1258038 chr19:1258042 . . 0 25 hm5C_associated_SNPs_106006 0 0 1 0 0 chromatin 0.500231643921095 0.500231643921086 0.74729752 0 hm5C_site_59151 DeepMRMD:0.74729752;iRNA_m5C:0 59152 chr2 177034235 177034235 1 + C A BLCA 177034231 + 177034211 177034251 41 ACCGACCCTGCCCCCATCTTCACCCACCAATCCTGGAGGTG ACCGACCCTGCCCCCATCTTCACCAACCAATCCTGGAGGTG < 41bp 0.334691830039388 0.763122818169956 0.17971462 0.27302653 prediction 0.526245636339912 Functional Gain - HOXD3 ENSG00000128652 CDS Human protein_coding chr2:177034231 chr2:177034235 synonymous SNV . 0 25 hm5C_associated_SNPs_106007 0 0 0 0 0 exosome 0.500231644073416 0.500231643733849 0 0 hm5C_site_59152 DeepMRMD:0;iRNA_m5C:0 59153 chr1 248616141 248616141 1 + C A LUAD 248616137 + 248616117 248616157 41 CTCCAGAACTCCACTAACTTCGTCCTCACAGGCCTCATCAC CTCCAGAACTCCACTAACTTCGTCATCACAGGCCTCATCAC < 41bp 0.397411763015513 0.763117827266911 0.37862104 0.27344644 prediction 0.526235654533821 Functional Gain - OR2T2 ENSG00000196240 CDS Human protein_coding chr1:248616137 chr1:248616141 nonsynonymous SNV 0.009 1 25 hm5C_associated_SNPs_106008 0 0 0 0 0 exosome 0.500231643921653 0.500231643767084 0 0 hm5C_site_59153 DeepMRMD:0;iRNA_m5C:0 59154 chr11 66191487 66191487 1 + C T SKCM 66191486 + 66191466 66191506 41 GCTCCCAGAAGCACCAGCTTCCCCAGTGCTCCTGAACTGAG GCTCCCAGAAGCACCAGCTTCTCCAGTGCTCCTGAACTGAG < 41bp 0.494059753117683 0.763110569560532 0.3062638 0.95023394 prediction 0.526221139121065 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66191486 chr11:66191487 nonsynonymous SNV 0.987 0 22 hm5C_associated_SNPs_106009 0 0 0 0 0 unknown 0.500231643407775 0.500224064168351 0.90046788 0 hm5C_site_59154 DeepMRMD:0.90046788;iRNA_m5C:0 59155 chr19 56206694 56206694 1 + C G READ 56206690 + 56206670 56206710 41 CCATGATGCCCCCGGGCCCCCCGGCCCCCAACACTAATCCC CCATGATGCCCCCGGGCCCCCCGGGCCCCAACACTAATCCC < 41bp 0.508077177252053 0.771184774756698 0.012517959 0.028772801 prediction 0.526215195009289 Functional Gain - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56206690 chr19:56206694 nonsynonymous SNV 0.942 0 25 hm5C_associated_SNPs_106010 0 0 1 0 0 chromatin 0.50023164393735 0.500231643921091 0 0 hm5C_site_59155 DeepMRMD:0;iRNA_m5C:0 59156 chr17 38430097 38430097 1 + C T SKCM 38430096 + 38430076 38430116 41 TGCCAGGGATGCTCCCCCTCCCCCACCACCATACCGAATGC TGCCAGGGATGCTCCCCCTCCTCCACCACCATACCGAATGC < 41bp 0.54436697330758 0.807473288531477 0.064520955 0.91336167 prediction 0.526212630447793 Functional Gain - WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38430096 chr17:38430097 synonymous SNV . 0 22 hm5C_associated_SNPs_106011 0 0 1 0 1 Ribosome 0.500231643983871 0.500231659065926 0.82672334 3.01641098765515e-08 hm5C_site_59156 DeepMRMD:0.82672334;iRNA_m5C:3.01641098765515e-08 59157 chr3 189607202 189607202 1 + C G UCEC 189607201 + 189607181 189607221 41 CCCCACCCAGGCACTCCCTCCCCCACTCTCCATGCCATCCA CCCCACCCAGGCACTCCCTCCGCCACTCTCCATGCCATCCA < 41bp 0.460065002494547 0.763104601778124 0.021994025 0.15459615 prediction 0.526209203556247 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189607201 chr3:189607202 synonymous SNV . 0 22 hm5C_associated_SNPs_106012 0 0 0 0 2 chromatin 0.500231643920165 0.500231643921622 0 2.91389135043119e-12 hm5C_site_59157 DeepMRMD:0;iRNA_m5C:2.91389135043119e-12 59158 chr17 39388967 39388967 1 + C A HNSC 39388963 + 39388943 39388983 41 CCCATCTGTGTGACCAGCTGCTGCCAGCCTTCCTGCTGTAG CCCATCTGTGTGACCAGCTGCTGCAAGCCTTCCTGCTGTAG < 41bp 0.355331914772863 0.763102801698265 0.09684667 0.24588543 prediction 0.52620560339653 Functional Gain - KRTAP9-3 ENSG00000204873 CDS Human protein_coding chr17:39388963 chr17:39388967 nonsynonymous SNV 0.071 0 25 hm5C_associated_SNPs_106013 0 0 0 0 0 unknown 0.50023151474749 0.500231570570521 0 1.11646061728976e-07 hm5C_site_59158 DeepMRMD:0;iRNA_m5C:1.11646061728976e-07 59159 chr16 2757959 2757959 1 + T G rs115398997 2757956 + 2757936 2757976 41 CCGGGACAGTCAAGGCTTCTCAATTTGTATTTTCCAGGCAA CCGGGACAGTCAAGGCTTCTCAAGTTGTATTTTCCAGGCAA < 41bp 0.383819732171953 0.763095094019934 0.21396574 0.40903887 prediction 0.526190188039867 Functional Gain - KCTD5 ENSG00000167977 UTR3 Human protein_coding chr16:2757956 chr16:2757959 . . 0 24 hm5C_associated_SNPs_106014 0 0 1 0 0 Ribosome 0.500231646211435 0.500231644623398 0 0 hm5C_site_59159 DeepMRMD:0;iRNA_m5C:0 59160 chr11 65341027 65341027 1 + C A COAD 65341023 + 65341003 65341043 41 AGGAGCCTCCCGATGCCAGCCTGCCTCCTGACCCGCCACCC AGGAGCCTCCCGATGCCAGCCTGCATCCTGACCCGCCACCC < 41bp 0.655894001444323 0.918979909687111 0.20673338 0.16880399 prediction 0.526171816485577 Functional Gain - FAM89B ENSG00000176973 CDS Human protein_coding chr11:65341023 chr11:65341027 nonsynonymous SNV 0.965 2 25 hm5C_associated_SNPs_106015 0 0 1 0 0 Cytosol 0.500231701163909 0.500231665683551 0 0 hm5C_site_59160 DeepMRMD:0;iRNA_m5C:0 59161 chr17 42826844 42826844 1 + C G rs188198587 42826843 + 42826823 42826863 41 CAAAAGAGCTAGAAGGAGGCCCGGGCCTGGCCTTTGAAGTC CAAAAGAGCTAGAAGGAGGCCGGGGCCTGGCCTTTGAAGTC < 41bp 0.573999047934119 0.837079414742629 0.32173836 0.6678392 prediction 0.526160733617022 Functional Gain - DBF4B ENSG00000161692 UTR3 Human protein_coding chr17:42826843 chr17:42826844 . . 0 22 hm5C_associated_SNPs_106016 0 0 1 1 0 chromatin 0.500231643921093 0.500231643921092 0.3356784 0 hm5C_site_59161 DeepMRMD:0.3356784;iRNA_m5C:0 59162 chrX 37028233 37028233 1 + C A LUAD 37028229 + 37028209 37028249 41 GATACTGGAGTGTCCCATCTCTGCCCAGAGCCTCCCAAGAC GATACTGGAGTGTCCCATCTCTGCACAGAGCCTCCCAAGAC < 41bp 0.654001771489863 0.917080598698747 0.2593458 0.12793943 prediction 0.52615765441777 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37028229 chrX:37028233 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106017 0 0 0 0 0 unknown 0.50023164393412 0.500231643921033 0 0 hm5C_site_59162 DeepMRMD:0;iRNA_m5C:0 59163 chr22 19467482 19467482 1 + C A rs13447183 19467478 + 19467458 19467498 41 CAGCGCGAGCGCCAGGCGTCCGGCCGCCGTGGCTATGTTCG CAGCGCGAGCGCCAGGCGTCCGGCAGCCGTGGCTATGTTCG < 41bp 0.534838179932368 0.79790602243375 0.74089587 0.84932303 prediction 0.526135685002765 Functional Gain - CDC45 ENSG00000093009 UTR5 Human protein_coding chr22:19467478 chr22:19467482 . . 0 25 hm5C_associated_SNPs_106018 0 0 1 0 2 Ribosome 0.500231643921092 0.500231658751343 0.21685432 2.96605002780836e-08 hm5C_site_59163 DeepMRMD:0.21685432;iRNA_m5C:2.96605002780836e-08 59164 chr13 76123641 76123641 1 + C G rs7995889 76123637 + 76123617 76123657 41 GCGCATGCGTAGAACGCGAGCGCTCGGCAAGGCTCGGCTCG GCGCATGCGTAGAACGCGAGCGCTGGGCAAGGCTCGGCTCG < 41bp 0.511608083686988 0.774669490458087 0.09159225 0.29702356 prediction 0.526122813542199 Functional Gain - UCHL3 ENSG00000118939;ENSG00000261553 upstream Human other chr13:76123637 chr13:76123641 . . 0 25 hm5C_associated_SNPs_106019 0 0 0 0 0 Ribosome 0.500231642418988 0.500228623073685 0 0 hm5C_site_59164 DeepMRMD:0;iRNA_m5C:0 59165 chr14 103193131 103193131 1 + C A rs182606768 103193127 + 103193107 103193147 41 GACTCTGGGAACCGCCTCTCCCGCCGGAGCCCCCGAGCCCC GACTCTGGGAACCGCCTCTCCCGCAGGAGCCCCCGAGCCCC < 41bp 0.380469975284976 0.763052872812134 0.32254967 0.34995627 prediction 0.526105745624268 Functional Gain - RCOR1 ENSG00000089902 UTR3 Human protein_coding chr14:103193127 chr14:103193131 . . 0 25 hm5C_associated_SNPs_106020 0 0 1 0 0 Cytosol 0.500231643921092 0.500231648624882 0 9.40757938217018e-09 hm5C_site_59165 DeepMRMD:0;iRNA_m5C:9.40757938217018e-09 59166 chr3 186793423 186793423 1 + C A rs7629263 186793419 + 186793399 186793439 41 CCTCCCATCCAAGCGCAAGACTGACGTGTGCTACTACTACC CCTCCCATCCAAGCGCAAGACTGAAGTGTGCTACTACTACC < 41bp 0.351112277946566 0.76304340740556 0.009632587 0.04427281 prediction 0.52608681481112 Functional Gain - ST6GAL1 ENSG00000073849 CDS Human protein_coding chr3:186793419 chr3:186793423 nonsynonymous SNV 0.373 1 25 hm5C_associated_SNPs_106021 0 0 1 0 1 Ribosome 0.500231643919955 0.500231644061259 0 2.82606160695309e-10 hm5C_site_59166 DeepMRMD:0;iRNA_m5C:2.82606160695309e-10 59167 chr18 47101752 47101752 1 + C G SKCM 47101748 + 47101728 47101768 41 TTCTGCTGCAGGTTTGGATCCTGCCGGGCCCATGTTTGAAG TTCTGCTGCAGGTTTGGATCCTGCGGGGCCCATGTTTGAAG < 41bp 0.480389994422509 0.763026159203373 0.23699465 0.67043525 prediction 0.526052318406746 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47101748 chr18:47101752 synonymous SNV . 0 25 hm5C_associated_SNPs_106022 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0.3408705 0 hm5C_site_59167 DeepMRMD:0.3408705;iRNA_m5C:0 59168 chr5 1213683 1213683 1 + C G ESCA 1213679 + 1213659 1213699 41 AATGGCATCGTCTTCCTCTTCACGCCCAACGTAAGTCCCCG AATGGCATCGTCTTCCTCTTCACGGCCAACGTAAGTCCCCG < 41bp 0.551924618829945 0.814930144289933 0.05912435 0.19465142 prediction 0.526011050919978 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1213679 chr5:1213683 nonsynonymous SNV 0.492 4 25 hm5C_associated_SNPs_106023 0 0 0 0 1 cytosol 0.500231643367137 0.500231643921435 0 1.10859632584948e-09 hm5C_site_59168 DeepMRMD:0;iRNA_m5C:1.10859632584948e-09 59169 chr1 238090509 238090509 1 + T C BLCA 238090507 + 238090487 238090527 41 ACTCAGATCATGTTTGAGACCTTCAACTCCCCGGCCATGTA ACTCAGATCATGTTTGAGACCTCCAACTCCCCGGCCATGTA < 41bp 0.523228322878398 0.786231828390914 0.26964182 0.94692636 prediction 0.526007011025031 Functional Gain - LOC100130331 ENSG00000237250;ENSG00000243781 ncRNA_exonic Human other chr1:238090507 chr1:238090509 . . 0 23 hm5C_associated_SNPs_106024 0 0 0 0 0 unknown 0.500231669076444 0.500231648500389 0.89385272 0 hm5C_site_59169 DeepMRMD:0.89385272;iRNA_m5C:0 59170 chr9 138415126 138415126 1 + C G LUAD 138415122 + 138415102 138415142 41 GAAGGCCGTCCTGGAGAAAACTGACGAGCCGGGAAAATACA GAAGGCCGTCCTGGAGAAAACTGAGGAGCCGGGAAAATACA < 41bp 0.46871885803388 0.763003351670003 0.43272883 0.8667531 prediction 0.526006703340006 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415122 chr9:138415126 nonsynonymous SNV 0.005 0 25 hm5C_associated_SNPs_106025 0 0 0 0 2 Nucleus 0.500231643921093 0.500231643921092 0.7335062 0 hm5C_site_59170 DeepMRMD:0.7335062;iRNA_m5C:0 59171 chr3 57542935 57542935 1 + T A BLCA 57542931 + 57542911 57542951 41 GTGGTAGAGGCTGGGCCTGGCACCTGCACTTTTGACCACCG GTGGTAGAGGCTGGGCCTGGCACCAGCACTTTTGACCACCG < 41bp 0.591745796277413 0.854745855429253 0.33476216 0.42863464 prediction 0.52600011830368 Functional Gain - PDE12 ENSG00000174840 CDS Human protein_coding chr3:57542931 chr3:57542935 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106026 0 0 1 0 0 Endoplasmic reticulum 0.50023164389843 0.500231643934223 0 7.15847381371759e-11 hm5C_site_59171 DeepMRMD:0;iRNA_m5C:7.15847381371759e-11 59172 chr12 69783937 69783937 1 + T C rs315121 69783935 + 69783915 69783955 41 TGTTTTCTTTAGTTGCAGAGCTTGAAGTGAAAACCAGAGAA TGTTTTCTTTAGTTGCAGAGCTCGAAGTGAAAACCAGAGAA < 41bp 0.503712664172314 0.76670674593967 0.4604833 0.3338052 prediction 0.525988163534711 Functional Gain - YEATS4 ENSG00000127337 CDS Human protein_coding chr12:69783935 chr12:69783937 synonymous SNV . 0 23 hm5C_associated_SNPs_106027 0 0 1 0 1 Ribosome 0.500231641147604 0.500231644798268 0 7.30132976300979e-09 hm5C_site_59172 DeepMRMD:0;iRNA_m5C:7.30132976300979e-09 59173 chr5 3599702 3599702 1 + C G LUAD 3599701 + 3599681 3599721 41 GGCAGCGACACCGAGGGCGACCCGGAGAAGGCCGAGGACGA GGCAGCGACACCGAGGGCGACGCGGAGAAGGCCGAGGACGA < 41bp 0.452356870764295 0.762981049597874 0.88208604 0.85397696 prediction 0.525962099195749 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3599701 chr5:3599702 nonsynonymous SNV 0.995 0 22 hm5C_associated_SNPs_106028 0 0 0 0 0 exosome 0.500231643900121 0.500231889662695 0 4.9152514813855e-07 hm5C_site_59173 DeepMRMD:0;iRNA_m5C:4.9152514813855e-07 59174 chr7 143806688 143806688 1 + C A rs10230228 143806684 + 143806664 143806704 41 TGCCACAAGAGCATGGAAGGCAACCAGACATGGATCACAGA TGCCACAAGAGCATGGAAGGCAACAAGACATGGATCACAGA < 41bp 0.392750019034336 0.76297535938968 0.07458195 0.0482212 prediction 0.52595071877936 Functional Gain - OR2A2 ENSG00000221989 CDS Human protein_coding chr7:143806684 chr7:143806688 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_106029 0 0 0 0 0 unknown 0.500231643917786 0.500231680562139 0 7.3288707103103e-08 hm5C_site_59174 DeepMRMD:0;iRNA_m5C:7.3288707103103e-08 59175 chr19 42814808 42814808 1 + C G rs182146218 42814807 + 42814787 42814827 41 CCTGGACTGGAGCCCCAGCCCCCCTTCCCCACTGCCCAGCC CCTGGACTGGAGCCCCAGCCCGCCTTCCCCACTGCCCAGCC < 41bp 0.582766281297736 0.845741261582864 0.045763195 0.05645442 prediction 0.525949960570256 Functional Gain - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814807 chr19:42814808 synonymous SNV . 0 22 hm5C_associated_SNPs_106030 0 0 0 6 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59175 DeepMRMD:0;iRNA_m5C:0 59176 chr21 46020630 46020630 1 + T A ESCA 46020626 + 46020606 46020646 41 TCCGACTCCTGGCAGGTGGACGACTGCCCAGAGAGCTGCTG TCCGACTCCTGGCAGGTGGACGACAGCCCAGAGAGCTGCTG < 41bp 0.466838853530816 0.762973967589158 0.1487737 0.18696433 prediction 0.525947935178316 Functional Gain - KRTAP10-7 ENSG00000205441 CDS Human other chr21:46020626 chr21:46020630 nonsynonymous SNV 0.670 0 25 hm5C_associated_SNPs_106031 0 0 0 0 0 unknown 0.500231643923872 0.50023164392155 0 0 hm5C_site_59176 DeepMRMD:0;iRNA_m5C:0 59177 chr17 16335418 16335418 1 + T C UCEC 16335416 + 16335396 16335436 41 AGGGGTATCCTGGAAGCCTCCTTGGAGCTCTTCAAATTCAC AGGGGTATCCTGGAAGCCTCCTCGGAGCTCTTCAAATTCAC < 41bp 0.501604205208842 0.764577551167819 0.032354504 0.18024766 prediction 0.525946691917954 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16335416 chr17:16335418 nonsynonymous SNV 0.852 4 23 hm5C_associated_SNPs_106032 0 0 0 0 0 Endoplasmic reticulum 0.500231643933954 0.500231643921093 0 0 hm5C_site_59177 DeepMRMD:0;iRNA_m5C:0 59178 chr8 11142190 11142190 1 + C G rs370839560 11142189 + 11142169 11142209 41 GAGAGGCGCTTGGGCCTCGTCCAGCCCCAGCCCCTGTCTCC GAGAGGCGCTTGGGCCTCGTCGAGCCCCAGCCCCTGTCTCC < 41bp 0.541525707497428 0.804490667613664 0.5474655 0.6772348 prediction 0.525929920232471 Functional Gain - MTMR9 ENSG00000104643 UTR5 Human protein_coding chr8:11142189 chr8:11142190 . . 0 22 hm5C_associated_SNPs_106033 0 0 0 0 0 Ribosome 0.500231643619879 0.500231417509094 0.2595386 0 hm5C_site_59178 DeepMRMD:0.2595386;iRNA_m5C:0 59179 chr17 57744280 57744280 1 + T C STAD 57744278 + 57744258 57744298 41 TTCAGGTGGCTTCTAAATATCATGAACAACTGTCAACTCAG TTCAGGTGGCTTCTAAATATCACGAACAACTGTCAACTCAG < 41bp 0.526367422341893 0.78933028314166 0.02866584 0.04031983 prediction 0.525925721599533 Functional Gain - CLTC ENSG00000141367 CDS Human protein_coding chr17:57744278 chr17:57744280 synonymous SNV . 0 23 hm5C_associated_SNPs_106034 0 0 1 0 1 Nucleus 0.50023259321382 0.50023174449847 0 0 hm5C_site_59179 DeepMRMD:0;iRNA_m5C:0 59180 chr7 143826317 143826317 1 + C A LUSC 143826313 + 143826293 143826333 41 TTCTCTGCCTTCTATACACTCACCCTGCTGGGGAATGGGGT TTCTCTGCCTTCTATACACTCACCATGCTGGGGAATGGGGT < 41bp 0.368958056370562 0.762956482608363 0.08570081 0.12110633 prediction 0.525912965216726 Functional Gain - OR2A14 ENSG00000221938 CDS Human protein_coding chr7:143826313 chr7:143826317 nonsynonymous SNV 0.003 3 25 hm5C_associated_SNPs_106035 0 0 0 0 0 unknown 0.500231643921092 0.500231643974262 0 1.06338715610832e-10 hm5C_site_59180 DeepMRMD:0;iRNA_m5C:1.06338715610832e-10 59181 chr19 19344695 19344695 1 + C A ESCA 19344694 + 19344674 19344714 41 TAGCTGTGATCAGGGCTTCGCCGGGGAGAACTGTGAGATTG TAGCTGTGATCAGGGCTTCGCAGGGGAGAACTGTGAGATTG < 41bp 0.506290745228312 0.769243495561608 0.9454678 0.9460437 prediction 0.525905500666592 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19344694 chr19:19344695 synonymous SNV . 0 22 hm5C_associated_SNPs_106036 0 0 0 0 2 exosome 0.500231643936485 0.500231643921093 0.00115180000000015 0 hm5C_site_59181 DeepMRMD:0.00115180000000015;iRNA_m5C:0 59182 chr12 94542539 94542539 1 + C A rs562037235 94542535 + 94542515 94542555 41 GCCGGAGCGCGCAGGGCTTGCTGCCGCCACCGCCGCTGCAC GCCGGAGCGCGCAGGGCTTGCTGCAGCCACCGCCGCTGCAC < 41bp 0.60840155569285 0.871326586309478 0.41615924 0.48888552 prediction 0.525850061233257 Functional Gain - PLXNC1 ENSG00000136040 UTR5 Human protein_coding chr12:94542535 chr12:94542539 . . 0 25 hm5C_associated_SNPs_106037 0 0 1 0 0 chromatin 0.500231634626424 0.500231263524388 0 0 hm5C_site_59182 DeepMRMD:0;iRNA_m5C:0 59183 chr1 160054122 160054122 1 + T C UCEC 160054120 + 160054100 160054140 41 GACACCGCGTGGACGCCGTGCGTCAACAACCTCAACGGCTT GACACCGCGTGGACGCCGTGCGCCAACAACCTCAACGGCTT < 41bp 0.491926147316519 0.762921754333034 0.21949792 0.13622692 prediction 0.525843508666068 Functional Gain - KCNJ9 ENSG00000162728 CDS Human protein_coding chr1:160054120 chr1:160054122 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_106038 0 0 0 0 0 nucleus 0.500231643919438 0.500231643298434 0 0 hm5C_site_59183 DeepMRMD:0;iRNA_m5C:0 59184 chr12 3701496 3701496 1 + T C COAD 3701494 + 3701474 3701514 41 GAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAA GAAATCTACGGGACCATATCCACGAAGCCAAATGCCAAAAA < 41bp 0.54709791965624 0.810015960974221 0.25246644 0.4443303 prediction 0.525836082635962 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701494 chr12:3701496 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106039 0 0 0 4 2 unknown 0.500231274554892 0.500231542456498 0 5.35803212686758e-07 hm5C_site_59184 DeepMRMD:0;iRNA_m5C:5.35803212686758e-07 59185 chr19 7982423 7982423 1 + C G rs189917216 7982419 + 7982399 7982439 41 CAGCGCCGAGGGCCTGGCTGCTGACGGCCCCCACCTGCACA CAGCGCCGAGGGCCTGGCTGCTGAGGGCCCCCACCTGCACA < 41bp 0.504776522477177 0.767684316041033 0.226076 0.4491277 prediction 0.525815587127712 Functional Gain - TGFBR3L ENSG00000260001 CDS Human protein_coding chr19:7982419 chr19:7982423 nonsynonymous SNV 0.066 0 25 hm5C_associated_SNPs_106040 0 0 0 0 1 exosome 0.500231643940103 0.500231643921092 0 0 hm5C_site_59185 DeepMRMD:0;iRNA_m5C:0 59186 chr2 190526224 190526224 1 + C G rs1132360 190526223 + 190526203 190526243 41 TCCTTCAGGGCTGAGCCATCCCGCGTGTCTTGCGCTCGGTG TCCTTCAGGGCTGAGCCATCCGGCGTGTCTTGCGCTCGGTG < 41bp 0.533546275750578 0.796447207057987 0.6199872 0.9066527 prediction 0.525801862614818 Functional Gain - ASNSD1 ENSG00000138381 UTR5 Human protein_coding chr2:190526223 chr2:190526224 . . 0 22 hm5C_associated_SNPs_106041 0 0 1 0 0 chromatin 0.500231643630259 0.500231643910742 0.573331 5.60967494678266e-10 hm5C_site_59186 DeepMRMD:0.573331;iRNA_m5C:5.60967494678266e-10 59187 chr1 155837976 155837976 1 + T G HNSC 155837974 + 155837954 155837994 41 TGCGGAGAGACAAAGATGGTCCTGGGAGGGAAGGTGGACGT TGCGGAGAGACAAAGATGGTCCGGGGAGGGAAGGTGGACGT < 41bp 0.418510045652655 0.762899464176228 0.50169253 0.78587383 prediction 0.525798928352456 Functional Gain - SYT11 ENSG00000132718 CDS Human protein_coding chr1:155837974 chr1:155837976 synonymous SNV . 0 23 hm5C_associated_SNPs_106042 0 0 1 0 0 Nucleus 0.500231642108408 0.500231650848608 0.5683626 1.74804013486352e-08 hm5C_site_59187 DeepMRMD:0.5683626;iRNA_m5C:1.74804013486352e-08 59188 chr1 18152302 18152302 1 + C G LAML 18152298 + 18152278 18152318 41 TGCATGTCCCATCGGTCCTCCTGGCCGACCAGCTGCAGATG TGCATGTCCCATCGGTCCTCCTGGGCGACCAGCTGCAGATG < 41bp 0.476861792870987 0.762899304064251 0.76664335 0.92805177 prediction 0.525798608128502 Functional Gain - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18152298 chr1:18152302 nonsynonymous SNV 0.422 2 25 hm5C_associated_SNPs_106043 0 0 0 0 1 unknown 0.50023169184183 0.500231702709139 0.32281684 2.17346185493739e-08 hm5C_site_59188 DeepMRMD:0.32281684;iRNA_m5C:2.17346185493739e-08 59189 chr1 179033506 179033506 1 + C A rs143013339 179033502 + 179033482 179033522 41 GTCCCCTTATGACTCTGGCCCGCGCCTCTTGGACATCATTG GTCCCCTTATGACTCTGGCCCGCGACTCTTGGACATCATTG < 41bp 0.348323198611782 0.762896196749769 0.07998443 0.12655637 prediction 0.525792393499537 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179033502 chr1:179033506 synonymous SNV . 0 25 hm5C_associated_SNPs_106044 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59189 DeepMRMD:0;iRNA_m5C:0 59190 chr12 125609313 125609313 1 + C G LUAD 125609312 + 125609292 125609332 41 TGGAAGAGAAGGCCATGAAGCCGGGTGAGTGTGCCTCTTCA TGGAAGAGAAGGCCATGAAGCGGGGTGAGTGTGCCTCTTCA < 41bp 0.577548114791905 0.840437268866138 0.9285568 0.952111 prediction 0.525778308148466 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125609312 chr12:125609313 nonsynonymous SNV 0.984 4 22 hm5C_associated_SNPs_106045 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.0471084000000002 0 hm5C_site_59190 DeepMRMD:0.0471084000000002;iRNA_m5C:0 59191 chr15 41194898 41194898 1 + C G BRCA 41194894 + 41194874 41194914 41 AAGAAGCTGTGGCTGAAGATCGCACGGCACGTGGTGCAGGA AAGAAGCTGTGGCTGAAGATCGCAGGGCACGTGGTGCAGGA < 41bp 0.505008920533339 0.767892464489182 0.19470319 0.77139014 prediction 0.525767087911686 Functional Gain - VPS18 ENSG00000104142 CDS Human protein_coding chr15:41194894 chr15:41194898 nonsynonymous SNV 0.988 2 25 hm5C_associated_SNPs_106046 0 0 0 0 1 chromatin 0.499440371957026 0.500225171510968 0.54278028 0.000450343021935362 hm5C_site_59191 DeepMRMD:0.54278028;iRNA_m5C:0.000450343021935362 59192 chr16 71950482 71950482 1 + T C LUSC 71950480 + 71950460 71950500 41 GAAGACTACCTCGTGGAGGCCATGGAGATCCTGGAGCTGTA GAAGACTACCTCGTGGAGGCCACGGAGATCCTGGAGCTGTA < 41bp 0.513604253832951 0.77648109968031 0.33539385 0.3324445 prediction 0.525753691694717 Functional Gain - IST1 ENSG00000182149 CDS Human protein_coding chr16:71950480 chr16:71950482 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106047 0 0 1 0 1 Ribosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_59192 DeepMRMD:0;iRNA_m5C:0 59193 chr8 122652225 122652225 1 + C A rs574984917 122652221 + 122652201 122652241 41 GCTGAGGAGAGAAGCGCCGGCGTGCGCGGTGCCACGTCGGA GCTGAGGAGAGAAGCGCCGGCGTGAGCGGTGCCACGTCGGA < 41bp 0.619291219510297 0.882167267644346 0.3237258 0.6013775 prediction 0.525752096268098 Functional Gain - HAS2-AS1 ENSG00000248690 ncRNA_exonic Human antisense chr8:122652221 chr8:122652225 . . 0 25 hm5C_associated_SNPs_106048 0 0 0 0 0 unknown 0.500231643895738 0.500231643918851 0.202755 4.62248017640832e-11 hm5C_site_59193 DeepMRMD:0.202755;iRNA_m5C:4.62248017640832e-11 59194 chr3 44763161 44763161 1 + T C LIHC 44763159 + 44763139 44763179 41 ATCAGAATACACACCTTATTCATCATCAGAGAATTCACACT ATCAGAATACACACCTTATTCACCATCAGAGAATTCACACT < 41bp 0.496939952557027 0.762874771292612 0.003908038 0.005062014 prediction 0.525749542585224 Functional Gain - ZNF502 ENSG00000196653 CDS Human protein_coding chr3:44763159 chr3:44763161 synonymous SNV . 0 23 hm5C_associated_SNPs_106049 0 0 1 0 0 exosome 0.500231649341186 0.50023167297127 0 4.72601697776298e-08 hm5C_site_59194 DeepMRMD:0;iRNA_m5C:4.72601697776298e-08 59195 chr17 6799971 6799971 1 + T G OV 6799968 + 6799948 6799988 41 GCCAAGACCTGGGTCCGGAGCTCTGATTTCCAGCTGCAGCA GCCAAGACCTGGGTCCGGAGCTCGGATTTCCAGCTGCAGCA < 41bp 0.378478678291155 0.762867198873117 0.24840912 0.30570695 prediction 0.525734397746235 Functional Gain - ALOX12P2 ENSG00000262943 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:6799968 chr17:6799971 . . 0 24 hm5C_associated_SNPs_106050 0 0 0 0 1 unknown 0.500231643921092 0.500231643921059 0 0 hm5C_site_59195 DeepMRMD:0;iRNA_m5C:0 59196 chr11 6891528 6891528 1 + C G rs7117739 6891524 + 6891504 6891544 41 GCTGGTCTGTGCAGACACAGCACTCTTTGAGATCTACGCCA GCTGGTCTGTGCAGACACAGCACTGTTTGAGATCTACGCCA < 41bp 0.540013488065879 0.802876966892467 0.05638197 0.12735394 prediction 0.525726957653175 Functional Gain - OR10A2 ENSG00000170790 CDS Human protein_coding chr11:6891524 chr11:6891528 synonymous SNV . 0 25 hm5C_associated_SNPs_106051 0 0 0 0 0 unknown 0.500230533580956 0.50023773201087 0 1.43968598282918e-05 hm5C_site_59196 DeepMRMD:0;iRNA_m5C:1.43968598282918e-05 59197 chr10 101090463 101090463 1 + T C BLCA 101090461 + 101090441 101090481 41 CTGACCCCCCTGGGAGACTGCTTCATGCTGCGCTCAGACGC CTGACCCCCCTGGGAGACTGCTCCATGCTGCGCTCAGACGC < 41bp 0.476127809344959 0.762863295011 0.2097727 0.9347863 prediction 0.525726590022 Functional Gain - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101090461 chr10:101090463 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106052 0 0 1 0 0 cytosol 0.500231645104265 0.500231643981488 0.8695726 0 hm5C_site_59197 DeepMRMD:0.8695726;iRNA_m5C:0 59198 chr15 88814178 88814178 1 + T G rs73456799 88814176 + 88814156 88814196 41 ATGCATACTTCTGCCTCTATCCTGAACTCTAGGTTCCTTGA ATGCATACTTCTGCCTCTATCCGGAACTCTAGGTTCCTTGA < 41bp 0.441376499635958 0.76285935984536 0.28802872 0.9360745 prediction 0.525718719690719 Functional Gain - NTRK3-AS1 ENSG00000260305 ncRNA_exonic Human lincRNA chr15:88814176 chr15:88814178 . . 0 23 hm5C_associated_SNPs_106053 0 0 0 0 0 unknown 0.500231643899118 0.500231643920965 0.872149 4.36941594017526e-11 hm5C_site_59198 DeepMRMD:0.872149;iRNA_m5C:4.36941594017526e-11 59199 chr11 124564312 124564312 1 + T C UCEC 124564310 + 124564290 124564330 41 AGAAAATGAAAACAAATAGTCTTCAAAATGAGGAAAAAGAG AGAAAATGAAAACAAATAGTCTCCAAAATGAGGAAAAAGAG < 41bp 0.520988970119416 0.783844707878426 0.522348 0.943571 prediction 0.52571147551802 Functional Gain - SPA17 ENSG00000064199 CDS Human protein_coding chr11:124564310 chr11:124564312 synonymous SNV . 0 23 hm5C_associated_SNPs_106054 0 0 1 0 0 Ribosome 0.500231709428168 0.500233390425156 0.842446 3.36199397721337e-06 hm5C_site_59199 DeepMRMD:0.842446;iRNA_m5C:3.36199397721337e-06 59200 chr17 26821460 26821460 1 + T G SKCM 26821457 + 26821437 26821477 41 TGGCCTCCTCGACTGGAAGACGGTGAACCAGAAGATGCCGT TGGCCTCCTCGACTGGAAGACGGGGAACCAGAAGATGCCGT < 41bp 0.35870274362896 0.762854960334886 0.35851327 0.42243046 prediction 0.525709920669773 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26821457 chr17:26821460 nonsynonymous SNV 0.628 3 24 hm5C_associated_SNPs_106055 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59200 DeepMRMD:0;iRNA_m5C:0 59201 chr3 151148153 151148153 1 + C G HNSC 151148152 + 151148132 151148172 41 GCCGCCTTGGTGCGGCAGCTCCAGAAGCAGCTTTCCAGTAA GCCGCCTTGGTGCGGCAGCTCGAGAAGCAGCTTTCCAGTAA < 41bp 0.546357818815936 0.809208539988822 0.8087047 0.8852817 prediction 0.525701442345773 Functional Gain - MED12L ENSG00000144893 CDS Human protein_coding chr3:151148152 chr3:151148153 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_106056 0 0 0 0 2 exosome 0.500231434106822 0.500231549779761 0.153154 2.31345878454192e-07 hm5C_site_59201 DeepMRMD:0.153154;iRNA_m5C:2.31345878454192e-07 59202 chr8 11872044 11872044 1 + C A rs9694819 11872040 + 11872020 11872060 41 CCCAGACAGGATGCCCGGGGCAACCCCCGCCCCTTCCCCTG CCCAGACAGGATGCCCGGGGCAACACCCGCCCCTTCCCCTG < 41bp 0.415563836041486 0.76284680642937 0.08926976 0.13975507 prediction 0.525693612858739 Functional Gain - DEFB134;DEFB130B ENSG00000255098 intronic Human other chr8:11872040 chr8:11872044 . . 0 25 hm5C_associated_SNPs_106057 0 0 0 0 0 unknown 0.500231643919189 0.500231643921093 0 3.80739884064951e-12 hm5C_site_59202 DeepMRMD:0;iRNA_m5C:3.80739884064951e-12 59203 chr11 132204999 132204999 1 + C A COAD 132204995 + 132204975 132205015 41 TCGAGGAGGGCAGGCTGCGTCTGGCTGCTGCCTCTTCTGGT TCGAGGAGGGCAGGCTGCGTCTGGATGCTGCCTCTTCTGGT < 41bp 0.574486737027448 0.837330660917934 0.18666497 0.25651807 prediction 0.525687847780971 Functional Gain - NTM ENSG00000182667 CDS Human protein_coding chr11:132204995 chr11:132204999 nonsynonymous SNV 0.941 3 25 hm5C_associated_SNPs_106058 0 0 0 0 1 Cytosol 0.500231643921093 0.500231643372392 0 0 hm5C_site_59203 DeepMRMD:0;iRNA_m5C:0 59204 chr4 152021718 152021718 1 + C A PAAD 152021714 + 152021694 152021734 41 TATAAGAAATATTGGAAAGACGCTCGTCACCAGGACCCAAG TATAAGAAATATTGGAAAGACGCTAGTCACCAGGACCCAAG < 41bp 0.349139388227713 0.762840672312467 0.15430033 0.3303938 prediction 0.525681344624933 Functional Gain - RPS3A ENSG00000145425 CDS Human protein_coding chr4:152021714 chr4:152021718 synonymous SNV . 0 25 hm5C_associated_SNPs_106059 0 0 1 0 1 Cytosol 0.500231649874142 0.500231643921169 0 0 hm5C_site_59204 DeepMRMD:0;iRNA_m5C:0 59205 chr1 8021764 8021764 1 + C G rs566749983 8021760 + 8021740 8021780 41 GAGGCCGGACGGCGCGCGTGCGTGCTGGCGTGCGTTCATTT GAGGCCGGACGGCGCGCGTGCGTGGTGGCGTGCGTTCATTT < 41bp 0.532129507022668 0.794969238725487 0.42018306 0.8409363 prediction 0.525679463405637 Functional Gain - PARK7 ENSG00000116288 UTR5 Human protein_coding chr1:8021760 chr1:8021764 . . 0 25 hm5C_associated_SNPs_106060 0 0 1 0 2 Ribosome 0.500231790535626 0.500231653495799 0.6818726 0 hm5C_site_59205 DeepMRMD:0.6818726;iRNA_m5C:0 59206 chr2 233245591 233245591 1 + C G rs377376739 233245590 + 233245570 233245610 41 CATCATGAAAGCAGGGCTTACCGGGCACTGACTGAGACGAT CATCATGAAAGCAGGGCTTACGGGGCACTGACTGAGACGAT < 41bp 0.590223726589231 0.85305729875927 0.8724469 0.8828715 prediction 0.525667144340078 Functional Gain - ALPP ENSG00000163283 CDS Human protein_coding chr2:233245590 chr2:233245591 nonsynonymous SNV 0.146 2 22 hm5C_associated_SNPs_106061 0 0 0 0 1 Endoplasmic reticulum 0.500231643854189 0.500231643920428 0.0208492 1.32478250591817e-10 hm5C_site_59206 DeepMRMD:0.0208492;iRNA_m5C:1.32478250591817e-10 59207 chr8 104513173 104513173 1 + C A OV 104513169 + 104513149 104513189 41 CTCCCATCCCGGCGGCCTCTCAGCCGCCTCTGCAGCCCGAG CTCCCATCCCGGCGGCCTCTCAGCAGCCTCTGCAGCCCGAG < 41bp 0.560816863642233 0.823646335039421 0.5419558 0.47430098 prediction 0.525658942794375 Functional Gain - RIMS2 ENSG00000176406 CDS Human protein_coding chr8:104513169 chr8:104513173 nonsynonymous SNV 0.858 1 25 hm5C_associated_SNPs_106062 0 0 0 0 0 Cytosol 0.500231643920729 0.500231643925273 0 9.08695341195198e-12 hm5C_site_59207 DeepMRMD:0;iRNA_m5C:9.08695341195198e-12 59208 chr7 63809234 63809234 1 + T G LUSC 63809232 + 63809212 63809252 41 GGTTCTCGGCCCTTAGTAAACATAAGAGAATTCATACTGGA GGTTCTCGGCCCTTAGTAAACAGAAGAGAATTCATACTGGA < 41bp 0.590532180841843 0.85334769678544 0.20720753 0.56046873 prediction 0.525631031887193 Functional Gain - ZNF736 ENSG00000234444 CDS Human protein_coding chr7:63809232 chr7:63809234 nonsynonymous SNV 0.953 4 23 hm5C_associated_SNPs_106063 0 0 0 0 0 nucleus 0.500231643921101 0.50023164391498 0.12093746 0 hm5C_site_59208 DeepMRMD:0.12093746;iRNA_m5C:0 59209 chrX 17768243 17768243 1 + C G HNSC 17768239 + 17768219 17768259 41 AGGAGGACCCGATCCTCAGCCGCACTCCGAGTCCAGTGCAT AGGAGGACCCGATCCTCAGCCGCAGTCCGAGTCCAGTGCAT < 41bp 0.475411589112477 0.76280685235996 0.23609364 0.51599574 prediction 0.525613704719919 Functional Gain - SCML1 ENSG00000047634 CDS Human protein_coding chrX:17768239 chrX:17768243 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_106064 0 0 1 0 0 insoluble cytoplasm 0.500232045792872 0.500231663357434 0.0319914800000001 0 hm5C_site_59209 DeepMRMD:0.0319914800000001;iRNA_m5C:0 59210 chr16 679958 679958 1 + C G rs76999357 679954 + 679934 679974 41 GGGTCTCATTCTGACCAGACCAGGCTCCTGTTACCCTGCCT GGGTCTCATTCTGACCAGACCAGGGTCCTGTTACCCTGCCT < 41bp 0.478082958325638 0.762804252392055 0.67045784 0.90590036 prediction 0.525608504784109 Functional Gain - RAB40C ENSG00000127578;ENSG00000197562 upstream;downstream Human other chr16:679954 chr16:679958 . . 0 25 hm5C_associated_SNPs_106065 0 0 1 0 0 Ribosome 0.500231613274001 0.500231643921092 0.47088504 6.12941832844882e-08 hm5C_site_59210 DeepMRMD:0.47088504;iRNA_m5C:6.12941832844882e-08 59211 chr5 170736448 170736448 1 + C A LIHC 170736444 + 170736424 170736464 41 GGCATCGACCAGATCCTTAACAGCCCGGACCAGGACAGCGC GGCATCGACCAGATCCTTAACAGCACGGACCAGGACAGCGC < 41bp 0.643699402769321 0.906502396875878 0.20941752 0.17260972 prediction 0.525605988213114 Functional Gain - TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736444 chr5:170736448 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_106066 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0 1.33226762955019e-15 hm5C_site_59211 DeepMRMD:0;iRNA_m5C:1.33226762955019e-15 59212 chr8 1497519 1497519 1 + C A LUSC 1497515 + 1497495 1497535 41 CATGAGCAGCTGGTGGAGCTCGGACGACAACCTGGACAGCG CATGAGCAGCTGGTGGAGCTCGGAAGACAACCTGGACAGCG < 41bp 0.645904102504815 0.908700273459507 0.9375441 0.9424519 prediction 0.525592341909384 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1497515 chr8:1497519 nonsynonymous SNV 0.977 4 25 hm5C_associated_SNPs_106067 0 0 0 0 0 nucleolus 0.500231638207985 0.500231643922058 0.00981560000000004 1.14281455410037e-08 hm5C_site_59212 DeepMRMD:0.00981560000000004;iRNA_m5C:1.14281455410037e-08 59213 chr16 67200492 67200492 1 + C A LUSC 67200488 + 67200468 67200508 41 AGTGTCTCTTTGGGCCACTTCAGGCGGGGCCGAGCAATGCA AGTGTCTCTTTGGGCCACTTCAGGAGGGGCCGAGCAATGCA < 41bp 0.657713889563103 0.920507534470365 0.8941738 0.90106356 prediction 0.525587289814523 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67200488 chr16:67200492 nonsynonymous SNV 0.720 0 25 hm5C_associated_SNPs_106068 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.0137795199999999 0 hm5C_site_59213 DeepMRMD:0.0137795199999999;iRNA_m5C:0 59214 chr20 43851609 43851609 1 + T A COAD 43851605 + 43851585 43851625 41 ACTGAAGAGAAAATACATGGCAAGTCTCAAAACCAGGTAAC ACTGAAGAGAAAATACATGGCAAGACTCAAAACCAGGTAAC < 41bp 0.554425154359478 0.817210415928247 0.051747054 0.1077964 prediction 0.525570523137539 Functional Gain - SEMG2 ENSG00000124157 CDS Human protein_coding chr20:43851605 chr20:43851609 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_106069 0 0 0 0 0 Cytosol 0.500231643922252 0.500231643921318 0 0 hm5C_site_59214 DeepMRMD:0;iRNA_m5C:0 59215 chr22 43011303 43011303 1 + C G rs549604353 43011302 + 43011282 43011322 41 ATTCGGGGTGACGCCCGAATCCTCACTGCTAATGTGAGACG ATTCGGGGTGACGCCCGAATCGTCACTGCTAATGTGAGACG < 41bp 0.550293544417949 0.813076693420486 0.022140801 0.013613284 prediction 0.525566298005074 Functional Gain - RNU12 ENSG00000270022 ncRNA_exonic Human lincRNA chr22:43011302 chr22:43011303 . . 0 22 hm5C_associated_SNPs_106070 0 0 1 5 0 unknown 0.500236777875752 0.500216997647416 0 0 hm5C_site_59215 DeepMRMD:0;iRNA_m5C:0 59216 chr3 127771264 127771264 1 + C G rs547385728 127771260 + 127771240 127771280 41 CCCCGCGCCGCGCCGCGCCGCTTGCCGCCGGGCTAGCACTG CCCCGCGCCGCGCCGCGCCGCTTGGCGCCGGGCTAGCACTG < 41bp 0.499281301864016 0.762777251861 0.16728398 0.21593621 prediction 0.525554503721999 Functional Gain - SEC61A1 ENSG00000058262 UTR5 Human protein_coding chr3:127771260 chr3:127771264 . . 0 25 hm5C_associated_SNPs_106071 0 0 1 0 0 Ribosome 0.500231643921092 0.50023164391578 0 0 hm5C_site_59216 DeepMRMD:0;iRNA_m5C:0 59217 chr16 56709987 56709987 1 + C G rs530117196 56709983 + 56709963 56710003 41 GTGAGAAGGGTACTCTGCACCCGGCCCCCTCTTCTAACTAT GTGAGAAGGGTACTCTGCACCCGGGCCCCTCTTCTAACTAT < 41bp 0.485046674005793 0.762775777837476 0.034603506 0.3001119 prediction 0.525551555674952 Functional Gain - MT1IP ENSG00000205358;ENSG00000187193 intergenic Human other chr16:56709983 chr16:56709987 . . 0 25 hm5C_associated_SNPs_106072 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59217 DeepMRMD:0;iRNA_m5C:0 59218 chr15 23811566 23811566 1 + C G LUAD 23811562 + 23811542 23811582 41 GAGTTTGTTCCAGGGCAGCCCTACCGGGGCCGCTGGGTTGC GAGTTTGTTCCAGGGCAGCCCTACGGGGGCCGCTGGGTTGC < 41bp 0.539361985878261 0.802134227561089 0.124371916 0.4881738 prediction 0.525544483365655 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811562 chr15:23811566 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_106073 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_59218 DeepMRMD:0;iRNA_m5C:0 59219 chr2 27248569 27248569 1 + T C rs200184079 27248567 + 27248547 27248587 41 CATCAGCCCGAAATGGCGGCCATGAGACTGATGCCCAAATT CATCAGCCCGAAATGGCGGCCACGAGACTGATGCCCAAATT < 41bp 0.5339398600642 0.796708229895419 0.21590447 0.30827492 prediction 0.525536739662438 Functional Gain - MAPRE3 ENSG00000084764 CDS Human protein_coding chr2:27248567 chr2:27248569 synonymous SNV . 0 23 hm5C_associated_SNPs_106074 0 0 1 0 1 Cytosol 0.499954451362405 0.500015812323879 0 3.16246477582993e-05 hm5C_site_59219 DeepMRMD:0;iRNA_m5C:3.16246477582993e-05 59220 chr5 176873879 176873879 1 + C A rs111752154 176873875 + 176873855 176873895 41 CCCCCGGGCCGCCGCCGCCTCCCCCCGCAGGCCCGGGGCTC CCCCCGGGCCGCCGCCGCCTCCCCACGCAGGCCCGGGGCTC < 41bp 0.414482058439203 0.762765165509355 0.069556594 0.06344709 prediction 0.525530331018709 Functional Gain - PRR7-AS1 ENSG00000246334 ncRNA_intronic Human antisense chr5:176873875 chr5:176873879 . . 0 25 hm5C_associated_SNPs_106075 0 0 1 0 1 unknown 0.500231646639471 0.500231632219705 0 0 hm5C_site_59220 DeepMRMD:0;iRNA_m5C:0 59221 chr1 118501624 118501624 1 + C G LUSC 118501623 + 118501603 118501643 41 ATTTCAAAAGTCAGCCAAGTCCGGGTAAGTGTCTTTGTATA ATTTCAAAAGTCAGCCAAGTCGGGGTAAGTGTCTTTGTATA < 41bp 0.486704094255775 0.762763896606823 0.62019736 0.9226481 prediction 0.525527793213647 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118501623 chr1:118501624 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_106076 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0.60490148 1.33226762955019e-15 hm5C_site_59221 DeepMRMD:0.60490148;iRNA_m5C:1.33226762955019e-15 59222 chr1 156811947 156811947 1 + G T LUAD 156811951 - 156811931 156811971 41 GTTTGTGCACCGAGATCTAGCAGCCCGCAACTGCATGGTGT GTTTGTGCACCGAGATCTAGCAGCACGCAACTGCATGGTGT < 41bp 0.354040300271853 0.762761771459543 0.49352238 0.2676261 prediction 0.525523542919085 Functional Gain - INSRR;NTRK1 ENSG00000027644;ENSG00000198400 CDS Human other chr1:156811951 chr1:156811947 synonymous SNV . 0 25 hm5C_associated_SNPs_106077 0 0 0 0 1 unknown 0.500231591027758 0.500233659544437 0 4.13703335633286e-06 hm5C_site_59222 DeepMRMD:0;iRNA_m5C:4.13703335633286e-06 59223 chr14 57396151 57396151 1 + C A rs181975536 57396147 + 57396127 57396167 41 AGCTGGGATTACAGGCGCCACTCCCGGCTAAATTTTTGTAT AGCTGGGATTACAGGCGCCACTCCAGGCTAAATTTTTGTAT < 41bp 0.385031692763725 0.76274501432252 0.122662604 0.9155617 prediction 0.525490028645041 Functional Gain - OTX2-AS1 ENSG00000248550 ncRNA_exonic Human lincRNA chr14:57396147 chr14:57396151 . . 0 25 hm5C_associated_SNPs_106078 0 0 0 0 0 unknown 0.500231642809774 0.500231643921099 0.8311234 2.22264917582038e-09 hm5C_site_59223 DeepMRMD:0.8311234;iRNA_m5C:2.22264917582038e-09 59224 chr20 61303250 61303250 1 + C A rs76616864 61303246 + 61303226 61303266 41 AGCTCCAGAGCAGCGTCTGACCACCGCCCGCGCCCACCCGG AGCTCCAGAGCAGCGTCTGACCACAGCCCGCGCCCACCCGG < 41bp 0.377767720544078 0.762739492398934 0.11906195 0.10644695 prediction 0.525478984797867 Functional Gain - SLCO4A1 ENSG00000101187 UTR3 Human protein_coding chr20:61303246 chr20:61303250 . . 0 25 hm5C_associated_SNPs_106079 0 0 1 0 0 Endoplasmic reticulum 0.50023164392385 0.50023164143025 0 0 hm5C_site_59224 DeepMRMD:0;iRNA_m5C:0 59225 chr1 6631264 6631264 1 + C G rs140548974 6631263 + 6631243 6631283 41 GCCGCCCTGCTGAGCCCTTTCCTGGTGCCCATGGTAAGCTG GCCGCCCTGCTGAGCCCTTTCGTGGTGCCCATGGTAAGCTG < 41bp 0.59069519741488 0.853422289868353 0.35280162 0.90228677 prediction 0.525454184906946 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6631263 chr1:6631264 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_106080 0 0 0 0 1 membrane 0.500231643921493 0.50023164392115 0.80457354 0 hm5C_site_59225 DeepMRMD:0.80457354;iRNA_m5C:0 59226 chr1 248308608 248308608 1 + C G LUAD 248308607 + 248308587 248308627 41 TCTCCTCATCTACCTGGACACCCAGCTCCACACCCCCATGT TCTCCTCATCTACCTGGACACGCAGCTCCACACCCCCATGT < 41bp 0.575821137053004 0.838541294739761 0.04609227 0.08204216 prediction 0.525440315373513 Functional Gain - OR2M5 ENSG00000162727 CDS Human protein_coding chr1:248308607 chr1:248308608 synonymous SNV . 0 22 hm5C_associated_SNPs_106081 0 0 0 0 0 unknown 0.500231652145002 0.500231898985984 0 4.93681962421277e-07 hm5C_site_59226 DeepMRMD:0;iRNA_m5C:4.93681962421277e-07 59227 chr1 9416313 9416313 1 + C A SKCM 9416309 + 9416289 9416329 41 CGTGGTGGGGGTGGCGACGGCAGACGCCCCCCTGCACTCTG CGTGGTGGGGGTGGCGACGGCAGAAGCCCCCCTGCACTCTG < 41bp 0.653793423362143 0.916511893091212 0.5284682 0.8245568 prediction 0.525436939458138 Functional Gain - SPSB1 ENSG00000171621 CDS Human protein_coding chr1:9416309 chr1:9416313 nonsynonymous SNV 0.275 1 25 hm5C_associated_SNPs_106082 0 0 0 0 0 nucleus 0.500233718147668 0.500231643920847 0.5921772 0 hm5C_site_59227 DeepMRMD:0.5921772;iRNA_m5C:0 59228 chr19 55019214 55019214 1 + T A LUAD 55019210 + 55019190 55019230 41 CGGTTGGGGTTCAAACATTCCGCCTGGAGAGGGAGGATAGA CGGTTGGGGTTCAAACATTCCGCCAGGAGAGGGAGGATAGA < 41bp 0.444941620306585 0.762715689060155 0.17020088 0.36993086 prediction 0.52543137812031 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019210 chr19:55019214 nonsynonymous SNV 0.069 3 25 hm5C_associated_SNPs_106083 0 0 0 0 1 exosome 0.500231643921085 0.500231643918784 0 0 hm5C_site_59228 DeepMRMD:0;iRNA_m5C:0 59229 chr6 39824173 39824173 1 + C A UCEC 39824169 + 39824149 39824189 41 AAATCAACCTCCGGGACAACCACCCTCTGCAGTTCATGGAG AAATCAACCTCCGGGACAACCACCATCTGCAGTTCATGGAG < 41bp 0.326465440492919 0.762712670387687 0.034069747 0.046375483 prediction 0.525425340775374 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39824169 chr6:39824173 nonsynonymous SNV 0.994 3 25 hm5C_associated_SNPs_106084 0 0 0 0 1 exosome 0.500231645200396 0.500228792833832 0 0 hm5C_site_59229 DeepMRMD:0;iRNA_m5C:0 59230 chr3 54930788 54930788 1 + A T STAD 54930792 - 54930772 54930812 41 AAAAATGTTCTCCTTGTCGCCAGCTTTCAGGAAGTCCCTTG AAAAATGTTCTCCTTGTCGCCAGCATTCAGGAAGTCCCTTG < 41bp 0.454867173687127 0.762703939193278 0.33262628 0.105567336 prediction 0.525407878386555 Functional Gain - CACNA2D3 ENSG00000157445 CDS Human protein_coding chr3:54930792 chr3:54930788 nonsynonymous SNV 0.668 0 25 hm5C_associated_SNPs_106085 0 0 0 0 1 Nucleus 0.500231696760892 0.500231643943071 0 0 hm5C_site_59230 DeepMRMD:0;iRNA_m5C:0 59231 chr1 41285618 41285618 1 + C G BLCA 41285614 + 41285594 41285634 41 GCTGGGCAGGGTCCTGGCTGCTGGCTTCGCCTTACTGGGCA GCTGGGCAGGGTCCTGGCTGCTGGGTTCGCCTTACTGGGCA < 41bp 0.549705403474602 0.812408047244324 0.2966193 0.7636311 prediction 0.525405287539443 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41285614 chr1:41285618 synonymous SNV . 0 25 hm5C_associated_SNPs_106086 0 0 0 0 2 chromatin 0.500231643917029 0.500231643921097 0.5272622 8.13593636905807e-12 hm5C_site_59231 DeepMRMD:0.5272622;iRNA_m5C:8.13593636905807e-12 59232 chrX 118540544 118540544 1 + C A STAD 118540543 + 118540523 118540563 41 CCTACAGACCTCATCAAAACCCGGTTGATCATGCAGAACAT CCTACAGACCTCATCAAAACCAGGTTGATCATGCAGAACAT < 41bp 0.499014608900221 0.762691211601102 0.42751557 0.74418837 prediction 0.525382423202204 Functional Gain - SLC25A43 ENSG00000077713 CDS Human protein_coding chrX:118540543 chrX:118540544 synonymous SNV . 0 22 hm5C_associated_SNPs_106087 0 0 0 0 0 Cytosol 0.500231650746205 0.500231726283059 0.48837674 1.51073707321814e-07 hm5C_site_59232 DeepMRMD:0.48837674;iRNA_m5C:1.51073707321814e-07 59233 chr3 8788341 8788341 1 + C A rs181285740 8788337 + 8788317 8788357 41 AGCCCCTGAAATGCCCAGTACTGCCATTTGACATGAGGGTA AGCCCCTGAAATGCCCAGTACTGCAATTTGACATGAGGGTA < 41bp 0.594772008203358 0.857458227685226 0.10258144 0.16732535 prediction 0.525372438963736 Functional Gain - CAV3 ENSG00000182533 UTR3 Human protein_coding chr3:8788337 chr3:8788341 . . 0 25 hm5C_associated_SNPs_106088 5 0 0 0 0 exosome 0.500231643921092 0.500231643917656 0 0 hm5C_site_59233 DeepMRMD:0;iRNA_m5C:0 Hypertrophic cardiomyopathy Hypertrophic cardiomyopathy 59234 chr16 332518 332518 1 + C A LUAD 332514 + 332494 332534 41 AAGTGTCTGCACCACACCTACCGCCGGGGCCTGCGCGGTGA AAGTGTCTGCACCACACCTACCGCAGGGGCCTGCGCGGTGA < 41bp 0.388313594977837 0.762683328945629 0.31721818 0.24064404 prediction 0.525366657891258 Functional Gain - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:332514 chr16:332518 synonymous SNV . 0 25 hm5C_associated_SNPs_106089 0 0 0 0 2 exosome 0.500231643920869 0.500231641854604 0 0 hm5C_site_59234 DeepMRMD:0;iRNA_m5C:0 59235 chr7 43665285 43665285 1 + T A rs150675734 43665281 + 43665261 43665301 41 AGTGTGATCTGATCAACACTCTGGTTACCTTGGTCAGTGAA AGTGTGATCTGATCAACACTCTGGATACCTTGGTCAGTGAA < 41bp 0.574030694235028 0.836710673124545 0.4956885 0.8689687 prediction 0.525359957779033 Functional Gain - STK17A ENSG00000164543 UTR3 Human protein_coding chr7:43665281 chr7:43665285 . . 0 25 hm5C_associated_SNPs_106090 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.7379374 0 hm5C_site_59235 DeepMRMD:0.7379374;iRNA_m5C:0 59236 chr2 99995517 99995517 1 + C G rs11896520 99995516 + 99995496 99995536 41 ACATAGTAAAAATGTAAACACCGAAAAGCTAAGAGCCCCTA ACATAGTAAAAATGTAAACACGGAAAAGCTAAGAGCCCCTA < 41bp 0.467725068418925 0.76267795368346 0.056791186 0.32212582 prediction 0.52535590736692 Functional Gain - EIF5B ENSG00000158417 CDS Human protein_coding chr2:99995516 chr2:99995517 synonymous SNV . 0 22 hm5C_associated_SNPs_106091 0 0 1 0 2 Ribosome 0.500231643921107 0.500231643921096 0 0 hm5C_site_59236 DeepMRMD:0;iRNA_m5C:0 59237 chr5 173011616 173011616 1 + T A rs735058 173011612 + 173011592 173011632 41 TTGAAGATGGTCCCAAATTCCTTGTCACTCCCTGCATGGAG TTGAAGATGGTCCCAAATTCCTTGACACTCCCTGCATGGAG < 41bp 0.533660215710087 0.796336385685994 0.008283496 0.0061869323 prediction 0.525352339951813 Functional Gain - LOC285593 ENSG00000253955 ncRNA_exonic Human antisense chr5:173011612 chr5:173011616 . . 0 25 hm5C_associated_SNPs_106092 0 0 0 1 0 unknown 0.500231643924486 0.500231643970053 0 9.11339892439855e-11 hm5C_site_59237 DeepMRMD:0;iRNA_m5C:9.11339892439855e-11 59238 chr16 2086471 2086471 1 + C A CESC 2086467 + 2086447 2086487 41 GGACCCGGGCTCACCTGCCGCCCGCTCTGGCCTCCGCGCCC GGACCCGGGCTCACCTGCCGCCCGATCTGGCCTCCGCGCCC < 41bp 0.353110769281682 0.762674893861125 0.046626627 0.08661568 prediction 0.52534978772225 Functional Gain - SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2086467 chr16:2086471 synonymous SNV . 0 25 hm5C_associated_SNPs_106093 0 0 0 0 1 Ribosome 0.500231643924005 0.500231643923342 0 0 hm5C_site_59238 DeepMRMD:0;iRNA_m5C:0 59239 chr1 234367379 234367379 1 + T C BLCA 234367377 + 234367357 234367397 41 TTCAGGAAGTTCGACGCGCCCTTCACCCTCACGTGGTTTGC TTCAGGAAGTTCGACGCGCCCTCCACCCTCACGTGGTTTGC < 41bp 0.558052085284123 0.820721923388355 0.031457365 0.6586107 prediction 0.525339676208463 Functional Gain - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234367377 chr1:234367379 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_106094 0 0 0 0 0 nucleoplasm 0.500231643918642 0.500231643921093 0.3172214 4.90052443069544e-12 hm5C_site_59239 DeepMRMD:0.3172214;iRNA_m5C:4.90052443069544e-12 59240 chr14 105715530 105715530 1 + C G rs61743879 105715526 + 105715506 105715546 41 GTTCAACAACGAGCTCATGGCCGACGTGCACTTCGTCGTGG GTTCAACAACGAGCTCATGGCCGAGGTGCACTTCGTCGTGG < 41bp 0.533690481255445 0.796345091589061 0.1801914 0.38978633 prediction 0.525309220667233 Functional Gain - BTBD6 ENSG00000184887 CDS Human protein_coding chr14:105715526 chr14:105715530 nonsynonymous SNV 0.683 4 25 hm5C_associated_SNPs_106095 0 0 1 0 2 Cytosol 0.500231905000298 0.500235222750789 0 6.63550098178867e-06 hm5C_site_59240 DeepMRMD:0;iRNA_m5C:6.63550098178867e-06 59241 chr16 56866247 56866247 1 + C T SKCM 56866246 + 56866226 56866266 41 ACGACGATGGCACCAGCTCCCCACAAGACAGGCTCACTCTC ACGACGATGGCACCAGCTCCCTACAAGACAGGCTCACTCTC < 41bp 0.519223843247123 0.781867480416249 0.026884288 0.62297356 prediction 0.525287274338252 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56866246 chr16:56866247 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_106096 0 0 1 0 2 Nucleus 0.500231645552551 0.500231643921186 0.24594712 0 hm5C_site_59241 DeepMRMD:0.24594712;iRNA_m5C:0 59242 chr22 29885828 29885828 1 + C A UVM 29885827 + 29885807 29885847 41 GAAGGAAGAAGCAAAGACCCCCGAGAAGGCCAAGTCCCCAG GAAGGAAGAAGCAAAGACCCCAGAGAAGGCCAAGTCCCCAG < 41bp 0.498372966057863 0.762640391929032 0.054106146 0.30755398 prediction 0.525280783858064 Functional Gain - NEFH ENSG00000100285 CDS Human protein_coding chr22:29885827 chr22:29885828 synonymous SNV . 0 22 hm5C_associated_SNPs_106097 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59242 DeepMRMD:0;iRNA_m5C:0 59243 chr19 49513273 49513273 1 + C A rs1062708 49513269 + 49513249 49513289 41 AAGGCGACGGGCAAGATCTCCAAGCTGGGCCGCTCCTTCAC AAGGCGACGGGCAAGATCTCCAAGATGGGCCGCTCCTTCAC < 41bp 0.656222922646348 0.918861168289403 0.1789135 0.15174574 prediction 0.525276491286111 Functional Gain - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49513269 chr19:49513273 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_106098 0 0 1 0 2 chromatin 0.500231659720528 0.500231643921094 0 0 hm5C_site_59243 DeepMRMD:0;iRNA_m5C:0 59244 chr13 53603113 53603113 1 + T A LUAD 53603109 + 53603089 53603129 41 GTTGACTCCAGCTCCAGCTTCAGCTCCAGCTCCAGGTCGGG GTTGACTCCAGCTCCAGCTTCAGCACCAGCTCCAGGTCGGG < 41bp 0.577703866155745 0.840341701803771 0.010827363 0.025858998 prediction 0.525275671296053 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53603109 chr13:53603113 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_106099 0 0 0 0 1 exosome 0.500231643929227 0.500231645043657 0 2.22885998546474e-09 hm5C_site_59244 DeepMRMD:0;iRNA_m5C:2.22885998546474e-09 59245 chr6 26459791 26459791 1 + C G rs72500817 26459787 + 26459767 26459807 41 TACGTTACGCTGCCATCTGTCACCCGAGAAAAATGCTGAGG TACGTTACGCTGCCATCTGTCACCGGAGAAAAATGCTGAGG < 41bp 0.549981840269496 0.812619593443865 0.32520455 0.4766259 prediction 0.525275506348738 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26459787 chr6:26459791 synonymous SNV . 0 25 hm5C_associated_SNPs_106100 0 0 1 0 1 Endoplasmic reticulum 0.50022847307157 0.500230795757836 0 4.64537253175301e-06 hm5C_site_59245 DeepMRMD:0;iRNA_m5C:4.64537253175301e-06 59246 chr19 51831104 51831104 1 + C A COAD 51831100 + 51831080 51831120 41 AACTATACGTGTCGCGCCGCCAACCGACTGGGAGCGTCCAG AACTATACGTGTCGCGCCGCCAACAGACTGGGAGCGTCCAG < 41bp 0.356973388372171 0.762631691890206 0.72798145 0.5671211 prediction 0.525263383780411 Functional Gain - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51831100 chr19:51831104 synonymous SNV . 0 25 hm5C_associated_SNPs_106101 0 0 0 0 1 Cytosol 0.500231643920539 0.500231643921092 0 1.10733644476113e-12 hm5C_site_59246 DeepMRMD:0;iRNA_m5C:1.10733644476113e-12 59247 chr1 155699156 155699156 1 + C G HNSC 155699155 + 155699135 155699175 41 TGAAAAGAGAAGATAAAAGCCCGGTAGGAAAACTGGGTGTC TGAAAAGAGAAGATAAAAGCCGGGTAGGAAAACTGGGTGTC < 41bp 0.466553140681575 0.76262929105148 0.7701374 0.8897935 prediction 0.52525858210296 Functional Gain - DAP3 ENSG00000132676 CDS Human protein_coding chr1:155699155 chr1:155699156 nonsynonymous SNV 0.895 0 22 hm5C_associated_SNPs_106102 0 0 1 0 1 chromatin 0.50023164391833 0.500231643921092 0.2393122 5.52402568132493e-12 hm5C_site_59247 DeepMRMD:0.2393122;iRNA_m5C:5.52402568132493e-12 59248 chr10 1046704 1046704 1 + C G rs199736710 1046703 + 1046683 1046723 41 ATCACTGCCCTGGCCCACCTCCGTGCTGCGGTCCTGTATGT ATCACTGCCCTGGCCCACCTCGGTGCTGCGGTCCTGTATGT < 41bp 0.449215216529351 0.7626263504093 0.6312766 0.61795264 prediction 0.5252527008186 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1046703 chr10:1046704 nonsynonymous SNV 0.365 4 22 hm5C_associated_SNPs_106103 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59248 DeepMRMD:0;iRNA_m5C:0 59249 chr3 67054170 67054170 1 + C A COAD 67054166 + 67054146 67054186 41 AAATTCCACCTCAGTTTGCACAGGCTATAGCCAAAAGCTGT AAATTCCACCTCAGTTTGCACAGGATATAGCCAAAAGCTGT < 41bp 0.375391565764414 0.762625001242519 0.2080909 0.1777412 prediction 0.525250002485038 Functional Gain - KBTBD8 ENSG00000163376 CDS Human protein_coding chr3:67054166 chr3:67054170 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_106104 0 0 0 0 0 cytosol 0.50023260071221 0.500231650219114 0 0 hm5C_site_59249 DeepMRMD:0;iRNA_m5C:0 59250 chr9 84609748 84609748 1 + C G LUSC 84609747 + 84609727 84609767 41 CATGTCAGAGCAGAGCCTGTCCAGGGCTGTCCCTGCAACTA CATGTCAGAGCAGAGCCTGTCGAGGGCTGTCCCTGCAACTA < 41bp 0.566992538508668 0.829616709837068 0.88394415 0.94501257 prediction 0.525248342656799 Functional Gain - SPATA31D1 ENSG00000214929 CDS Human protein_coding chr9:84609747 chr9:84609748 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_106105 0 0 0 0 0 exosome 0.500231643963616 0.500231660597671 0.12213684 3.32681107106936e-08 hm5C_site_59250 DeepMRMD:0.12213684;iRNA_m5C:3.32681107106936e-08 59251 chr17 8215738 8215738 1 + C A UCEC 8215734 + 8215714 8215754 41 CCCACCCAAGCCGTCTGGGTCACCCTGCACGCCTCTGCTCC CCCACCCAAGCCGTCTGGGTCACCATGCACGCCTCTGCTCC < 41bp 0.330786898475405 0.762616971061732 0.07953784 0.38822752 prediction 0.525233942123464 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8215734 chr17:8215738 synonymous SNV . 0 25 hm5C_associated_SNPs_106106 0 0 0 0 0 exosome 0.500231643921092 0.500231642983584 0 0 hm5C_site_59251 DeepMRMD:0;iRNA_m5C:0 59252 chr21 31802993 31802993 1 + C A LIHC 31802989 + 31802969 31803009 41 AGTTACGGATCCAGATTCTGCTACCCAAACTACTTGGCTTC AGTTACGGATCCAGATTCTGCTACACAAACTACTTGGCTTC < 41bp 0.380895507085573 0.762616277416284 0.07902831 0.36669943 prediction 0.525232554832568 Functional Gain - KRTAP13-4 ENSG00000186971 CDS Human protein_coding chr21:31802989 chr21:31802993 nonsynonymous SNV 0.010 3 25 hm5C_associated_SNPs_106107 0 0 0 0 0 unknown 0.500231643921092 0.500231643921043 0 0 hm5C_site_59252 DeepMRMD:0;iRNA_m5C:0 59253 chr11 55563774 55563774 1 + C G SKCM 55563770 + 55563750 55563790 41 TCTCCACCTGGGCCTCCCACCTGACTTCTATCACCATCTTC TCTCCACCTGGGCCTCCCACCTGAGTTCTATCACCATCTTC < 41bp 0.533355327225364 0.795967283575397 0.047916174 0.055172533 prediction 0.525223912700065 Functional Gain - OR5D14 ENSG00000186113 CDS Human protein_coding chr11:55563770 chr11:55563774 nonsynonymous SNV 0.745 2 25 hm5C_associated_SNPs_106108 0 0 0 0 0 unknown 0.500231643923406 0.50023164392111 0 0 hm5C_site_59253 DeepMRMD:0;iRNA_m5C:0 59254 chr2 239360121 239360121 1 + T A rs10178728 239360117 + 239360097 239360137 41 CCTGCCCTGCCCTGCAGTGTCTGCTCAGCTCCCACTGCTTC CCTGCCCTGCCCTGCAGTGTCTGCACAGCTCCCACTGCTTC < 41bp 0.492907122669978 0.762606410902365 0.20205534 0.39609614 prediction 0.525212821804731 Functional Gain - ASB1 ENSG00000065802 UTR3 Human protein_coding chr2:239360117 chr2:239360121 . . 0 25 hm5C_associated_SNPs_106109 0 0 1 0 0 Ribosome 0.500232079183478 0.500231863106939 0 0 hm5C_site_59254 DeepMRMD:0;iRNA_m5C:0 59255 chr22 26706763 26706763 1 + C A OV 26706759 + 26706739 26706779 41 ATCCGCATCGAGTTCACGTCCGACCAGGCCCGGGCGGCCTC ATCCGCATCGAGTTCACGTCCGACAAGGCCCGGGCGGCCTC < 41bp 0.340687053829912 0.762602885053553 0.08542752 0.113054216 prediction 0.525205770107106 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26706759 chr22:26706763 nonsynonymous SNV 0.029 0 25 hm5C_associated_SNPs_106110 0 0 0 0 1 exosome 0.500231642176636 0.500231706117736 0 1.27882201494955e-07 hm5C_site_59255 DeepMRMD:0;iRNA_m5C:1.27882201494955e-07 59256 chr14 74825062 74825062 1 + T G UCEC 74825060 + 74825040 74825080 41 GGTGCTGAGTGGGCATCTCCCTTTCTGCCGCTTCCGCCTCC GGTGCTGAGTGGGCATCTCCCTGTCTGCCGCTTCCGCCTCC < 41bp 0.426555174167273 0.76260118202313 0.075024575 0.23219004 prediction 0.525202364046261 Functional Gain - VRTN ENSG00000133980 CDS Human protein_coding chr14:74825060 chr14:74825062 nonsynonymous SNV 0.988 3 23 hm5C_associated_SNPs_106111 0 0 0 0 0 unknown 0.500231643921089 0.500231643920922 0 0 hm5C_site_59256 DeepMRMD:0;iRNA_m5C:0 59257 chr2 10863028 10863028 1 + C A OV 10863024 + 10863004 10863044 41 CTGGCGATAAGGAAAATTTGCAAGCTCTGGAGAGGATGAAT CTGGCGATAAGGAAAATTTGCAAGATCTGGAGAGGATGAAT < 41bp 0.359464363691541 0.762600767562162 0.1895771 0.23343769 prediction 0.525201535124323 Functional Gain - ATP6V1C2 ENSG00000143882 CDS Human protein_coding chr2:10863024 chr2:10863028 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_106112 0 0 1 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_59257 DeepMRMD:0;iRNA_m5C:0 59258 chr6 146755842 146755842 1 + C A rs9373491 146755838 + 146755818 146755858 41 GGGCAGCTCGGTGCCCAGCTCCCCCGTGTCCGAGTCGGTGC GGGCAGCTCGGTGCCCAGCTCCCCAGTGTCCGAGTCGGTGC < 41bp 0.369122563986959 0.762599902743088 0.10231009 0.32768002 prediction 0.525199805486176 Functional Gain - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146755838 chr6:146755842 synonymous SNV . 0 25 hm5C_associated_SNPs_106113 1 0 0 2 0 exosome 0.500231643921093 0.500231644099841 0 3.57495366642979e-10 hm5C_site_59258 DeepMRMD:0;iRNA_m5C:3.57495366642979e-10 not specified not specified 59259 chr11 55653148 55653148 1 + C A COAD 55653144 + 55653124 55653164 41 GCTTTCATTGCCAGAAAAGCCAGCCTCCGGCAATTCCTTAG GCTTTCATTGCCAGAAAAGCCAGCATCCGGCAATTCCTTAG < 41bp 0.654648667031068 0.917242427321348 0.24906123 0.25817406 prediction 0.52518752058056 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653144 chr11:55653148 nonsynonymous SNV 0.018 0 25 hm5C_associated_SNPs_106114 0 0 0 0 0 unknown 0.500231643921092 0.500231644708337 0 1.57449009385857e-09 hm5C_site_59259 DeepMRMD:0;iRNA_m5C:1.57449009385857e-09 59260 chr20 34054828 34054828 1 + T A LUSC 34054824 + 34054804 34054844 41 ACCTGAAAGGGGAGCACGGTCGCCTTCTCAGTCTATGGCGG ACCTGAAAGGGGAGCACGGTCGCCATCTCAGTCTATGGCGG < 41bp 0.428180670301335 0.762588989015213 0.25639886 0.7041935 prediction 0.525177978030426 Functional Gain - CEP250 ENSG00000126001 CDS Human protein_coding chr20:34054824 chr20:34054828 nonsynonymous SNV 0.957 3 25 hm5C_associated_SNPs_106115 0 0 1 0 1 Cytosol 0.500230784526378 0.50022452670346 0.408387 0 hm5C_site_59260 DeepMRMD:0.408387;iRNA_m5C:0 59261 chr7 21470382 21470382 1 + T C UCEC 21470380 + 21470360 21470400 41 AGCTTGCATCAGTGCCTAACCTTCAGACAGTGAGCGTTGCC AGCTTGCATCAGTGCCTAACCTCCAGACAGTGAGCGTTGCC < 41bp 0.552626913488406 0.815214404315289 0.16058505 0.94156706 prediction 0.525174981653767 Functional Gain - SP4 ENSG00000105866 CDS Human protein_coding chr7:21470380 chr7:21470382 synonymous SNV . 0 23 hm5C_associated_SNPs_106116 0 0 1 0 1 chromatin 0.500231677026086 0.500243562364666 0.88313412 2.37706771588631e-05 hm5C_site_59261 DeepMRMD:0.88313412;iRNA_m5C:2.37706771588631e-05 59262 chr8 87439926 87439926 1 + C G rs60177164 87439925 + 87439905 87439945 41 TTATTATGTGGATCATAACACCAGAACAACAACGTGGCAGC TTATTATGTGGATCATAACACGAGAACAACAACGTGGCAGC < 41bp 0.560856301679118 0.823443539762218 0.2506652 0.51294154 prediction 0.5251744761662 Functional Gain - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87439925 chr8:87439926 synonymous SNV . 0 22 hm5C_associated_SNPs_106117 0 0 1 0 1 Cytosol 0.500231643914147 0.500231634614506 0.0258830800000001 0 hm5C_site_59262 DeepMRMD:0.0258830800000001;iRNA_m5C:0 59263 chrX 48687784 48687784 1 + T G CESC 48687781 + 48687761 48687801 41 TTCCTACTGGAAGGAGTTGACCCTGGACAGTGGGGACTGCA TTCCTACTGGAAGGAGTTGACCCGGGACAGTGGGGACTGCA < 41bp 0.38063092361202 0.762582708465075 0.057263494 0.19488397 prediction 0.52516541693015 Functional Gain - ERAS ENSG00000187682 CDS Human protein_coding chrX:48687781 chrX:48687784 nonsynonymous SNV 0.000 1 24 hm5C_associated_SNPs_106118 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59263 DeepMRMD:0;iRNA_m5C:0 59264 chr14 102904477 102904477 1 + C G rs147312456 102904476 + 102904456 102904496 41 GCCTGTTCTGCAGCGCGTTGCCGGGCGCCGGGCTGCGCTGG GCCTGTTCTGCAGCGCGTTGCGGGGCGCCGGGCTGCGCTGG < 41bp 0.444888042576826 0.762580867301796 0.9073143 0.9411828 prediction 0.525161734603591 Functional Gain - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102904476 chr14:102904477 nonsynonymous SNV 0.028 1 22 hm5C_associated_SNPs_106119 0 0 1 0 1 Cytosol 0.500231644392545 0.500231643929502 0.0677369999999999 0 hm5C_site_59264 DeepMRMD:0.0677369999999999;iRNA_m5C:0 59265 chr18 77798511 77798511 1 + C G BLCA 77798510 + 77798490 77798530 41 GGGGCGGGGTCTCAGGTTTCCCTGACTCCAGACTTCTCAGC GGGGCGGGGTCTCAGGTTTCCGTGACTCCAGACTTCTCAGC < 41bp 0.451847764853764 0.762580447866712 0.11774826 0.3107198 prediction 0.525160895733424 Functional Gain - RBFA ENSG00000101546 CDS Human protein_coding chr18:77798510 chr18:77798511 nonsynonymous SNV 0.933 0 22 hm5C_associated_SNPs_106120 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59265 DeepMRMD:0;iRNA_m5C:0 59266 chr3 128758633 128758633 1 + C A LUAD 128758629 + 128758609 128758649 41 CCTGCCAGCTGTTGCGGAGACAGCCCTCGGCACCAGCCTCT CCTGCCAGCTGTTGCGGAGACAGCACTCGGCACCAGCCTCT < 41bp 0.64600225349494 0.908575167995286 0.05112967 0.29589045 prediction 0.525145829000692 Functional Gain - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128758629 chr3:128758633 nonsynonymous SNV 0.034 1 25 hm5C_associated_SNPs_106121 0 0 0 0 1 exosome 0.500231643591974 0.500231643919273 0 6.54597931415424e-10 hm5C_site_59266 DeepMRMD:0;iRNA_m5C:6.54597931415424e-10 59267 chr12 120119183 120119183 1 + T G rs4213 120119181 + 120119161 120119201 41 CTTTGGACCAAAGCAGACTTCTTTATACGCAGCTCAGTTTC CTTTGGACCAAAGCAGACTTCTGTATACGCAGCTCAGTTTC < 41bp 0.514189262632811 0.776757077073281 0.30464873 0.4861247 prediction 0.525135628880939 Functional Gain - PRKAB1 ENSG00000111725 UTR3 Human protein_coding chr12:120119181 chr12:120119183 . . 0 23 hm5C_associated_SNPs_106122 0 0 1 1 0 Ribosome 0.500231646428572 0.5002316437964 0 0 hm5C_site_59267 DeepMRMD:0;iRNA_m5C:0 59268 chr1 156618614 156618614 1 + C T SKCM 156618613 + 156618593 156618633 41 TTCCCCAACCAGACTGGCTTCCCCAATAAGCACAGCCGCTT TTCCCCAACCAGACTGGCTTCTCCAATAAGCACAGCCGCTT < 41bp 0.491492792665998 0.762566796786794 0.4373751 0.95640516 prediction 0.525133593573587 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156618613 chr1:156618614 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_106123 0 0 0 0 1 chromatin 0.500231643914359 0.50023164392204 0.91281032 1.53632662147629e-11 hm5C_site_59268 DeepMRMD:0.91281032;iRNA_m5C:1.53632662147629e-11 59269 chr11 64360346 64360346 1 + C A KIRC 64360342 + 64360322 64360362 41 GGGAGCTGCTGCGTGCGGCCCTGCCTCAGACAGGTGAGTAC GGGAGCTGCTGCGTGCGGCCCTGCATCAGACAGGTGAGTAC < 41bp 0.343816627517811 0.762556692661772 0.24946994 0.35571608 prediction 0.525113385323544 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64360342 chr11:64360346 synonymous SNV . 0 25 hm5C_associated_SNPs_106124 0 0 0 0 2 unknown 0.500231645699725 0.500231643972027 0 0 hm5C_site_59269 DeepMRMD:0;iRNA_m5C:0 59270 chr17 44952701 44952701 1 + C A PCPG 44952697 + 44952677 44952717 41 GAAACAAGGACCTGCGGGCACGGGCAGACGCCCACAATACC GAAACAAGGACCTGCGGGCACGGGAAGACGCCCACAATACC < 41bp 0.656638467184414 0.919189383429037 0.85460734 0.8907552 prediction 0.525101832489246 Functional Gain - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44952697 chr17:44952701 nonsynonymous SNV 0.892 1 25 hm5C_associated_SNPs_106125 0 0 0 0 1 exosome 0.50023164392108 0.500231643921093 0.0722957199999998 2.59792187762287e-14 hm5C_site_59270 DeepMRMD:0.0722957199999998;iRNA_m5C:2.59792187762287e-14 59271 chr1 2333744 2333744 1 + T C COAD 2333742 + 2333722 2333762 41 CCGATTCTGGTGATGTACTTCATCATGCTCTTCTGTATCAC CCGATTCTGGTGATGTACTTCACCATGCTCTTCTGTATCAC < 41bp 0.524468038726547 0.786987078403391 0.09347671 0.076699555 prediction 0.52503807935369 Functional Gain - RER1 ENSG00000157916 CDS Human protein_coding chr1:2333742 chr1:2333744 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106126 0 0 1 1 2 Ribosome 0.5002316452865 0.500231663039081 0 3.55051628098124e-08 hm5C_site_59271 DeepMRMD:0;iRNA_m5C:3.55051628098124e-08 59272 chr12 54379618 54379618 1 + T A LIHC 54379614 + 54379594 54379634 41 CCGAACATCTGGAATCGCCTCAGCTGGGGGGCAAAGTGAGT CCGAACATCTGGAATCGCCTCAGCAGGGGGGCAAAGTGAGT < 41bp 0.592839463386664 0.855346383677939 0.57244164 0.5601741 prediction 0.52501384058255 Functional Gain - HOXC10 ENSG00000180818 CDS Human protein_coding chr12:54379614 chr12:54379618 nonsynonymous SNV 0.996 1 25 hm5C_associated_SNPs_106127 0 0 0 0 0 exosome 0.500231643921092 0.500231643920256 0 0 hm5C_site_59272 DeepMRMD:0;iRNA_m5C:0 59273 chr11 65004309 65004309 1 + C G rs564476 65004308 + 65004288 65004328 41 GCTGGCCGTCTGCGTCCTGACCGAGACCCGCAACATGCCCC GCTGGCCGTCTGCGTCCTGACGGAGACCCGCAACATGCCCC < 41bp 0.458950399985281 0.76250394792073 0.39173862 0.8430362 prediction 0.525007895841461 Functional Gain - SLC22A20;POLA2 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:65004308 chr11:65004309 . . 0 22 hm5C_associated_SNPs_106128 0 0 0 0 1 unknown 0.500231648790093 0.500231675239794 0.6860724 5.28994028581309e-08 hm5C_site_59273 DeepMRMD:0.6860724;iRNA_m5C:5.28994028581309e-08 59274 chr13 32527288 32527288 1 + C G rs149871428 32527284 + 32527264 32527304 41 CAAGCCTTGGGACGATGAGACGGACACGGCCCACCTGGAGG CAAGCCTTGGGACGATGAGACGGAGACGGCCCACCTGGAGG < 41bp 0.486745234203322 0.762503428317507 0.23002893 0.6675474 prediction 0.525006856635013 Functional Gain - EEF1DP3 ENSG00000229715 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr13:32527284 chr13:32527288 . . 0 25 hm5C_associated_SNPs_106129 0 0 0 0 0 unknown 0.500231643957258 0.500231643921025 0.3350948 0 hm5C_site_59274 DeepMRMD:0.3350948;iRNA_m5C:0 59275 chr9 109701298 109701298 1 + C T SARC 109701297 + 109701277 109701317 41 CACGGAAAAGCCCTGACCCTCCCCAGGCCACGGATCGTCAG CACGGAAAAGCCCTGACCCTCTCCAGGCCACGGATCGTCAG < 41bp 0.482453976759119 0.762502662863807 0.04694888 0.9432105 prediction 0.525005325727615 Functional Gain - ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109701297 chr9:109701298 nonsynonymous SNV 0.991 2 22 hm5C_associated_SNPs_106130 0 0 0 0 1 exosome 0.500231643916494 0.500231645196502 0.886421 2.5600161990269e-09 hm5C_site_59275 DeepMRMD:0.886421;iRNA_m5C:2.5600161990269e-09 59276 chr16 81743439 81743439 1 + C A rs542882672 81743435 + 81743415 81743455 41 TCAAGGCAGGAAGACGTTTGCAACCGCGACAAAATAACTCT TCAAGGCAGGAAGACGTTTGCAACAGCGACAAAATAACTCT < 41bp 0.365416308030671 0.762498893006386 0.14025134 0.1668978 prediction 0.524997786012772 Functional Gain - CMIP ENSG00000153815 UTR3 Human protein_coding chr16:81743435 chr16:81743439 . . 0 25 hm5C_associated_SNPs_106131 0 0 1 0 1 Cytosol 0.50023154837024 0.500231643839114 0 1.90937749611209e-07 hm5C_site_59276 DeepMRMD:0;iRNA_m5C:1.90937749611209e-07 59277 chr2 177016726 177016726 1 + C A LUAD 177016722 + 177016702 177016742 41 GTCAGTCCGACCCCAAGCAGCCGCCCTCCGGGACGGCACTC GTCAGTCCGACCCCAAGCAGCCGCACTCCGGGACGGCACTC < 41bp 0.376078572858355 0.762494200620075 0.17667872 0.114533484 prediction 0.52498840124015 Functional Gain - HOXD4 ENSG00000170166 CDS Human protein_coding chr2:177016722 chr2:177016726 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_106132 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59277 DeepMRMD:0;iRNA_m5C:0 59278 chr2 160035657 160035657 1 + C G PRAD 160035653 + 160035633 160035673 41 GAGAGCAGACGGGGAAAACACGGCCTTCCTGTGTGAGCCCA GAGAGCAGACGGGGAAAACACGGCGTTCCTGTGTGAGCCCA < 41bp 0.55168347057416 0.814174575082135 0.77847993 0.89988476 prediction 0.52498220901595 Functional Gain - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160035653 chr2:160035657 synonymous SNV . 0 25 hm5C_associated_SNPs_106133 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0.24280966 0 hm5C_site_59278 DeepMRMD:0.24280966;iRNA_m5C:0 59279 chr5 156991 156991 1 + C A BLCA 156990 + 156970 157010 41 CTCCAGCAGCTGGAGCACCTCCGGGAGCTGGCGTCACTCCT CTCCAGCAGCTGGAGCACCTCAGGGAGCTGGCGTCACTCCT < 41bp 0.500917939133285 0.763408884737444 0.91103005 0.92673564 prediction 0.524981891208319 Functional Gain - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:156990 chr5:156991 synonymous SNV . 0 22 hm5C_associated_SNPs_106134 0 0 0 0 1 exosome 0.500231653933301 0.50023164392206 0.0314111799999999 0 hm5C_site_59279 DeepMRMD:0.0314111799999999;iRNA_m5C:0 59280 chr3 151538217 151538217 1 + T C LUSC 151538215 + 151538195 151538235 41 CAAGATGGACAGCAGACAGACTTGATGCTGTCGTCGTATCA CAAGATGGACAGCAGACAGACTCGATGCTGTCGTCGTATCA < 41bp 0.480321792197609 0.762481675680712 0.20550537 0.41638762 prediction 0.524963351361424 Functional Gain - AADAC ENSG00000114771 CDS Human protein_coding chr3:151538215 chr3:151538217 synonymous SNV . 0 23 hm5C_associated_SNPs_106135 0 0 0 0 2 exosome 0.500229986835318 0.50023164431282 0 3.31495500338619e-06 hm5C_site_59280 DeepMRMD:0;iRNA_m5C:3.31495500338619e-06 59281 chr1 210267718 210267718 1 + C A LUAD 210267714 + 210267694 210267734 41 CACCCCCGCTGGATGAATTGCAGCCACCACCATATCAGGAT CACCCCCGCTGGATGAATTGCAGCAACCACCATATCAGGAT < 41bp 0.351082318879295 0.762470896150153 0.16012672 0.068109214 prediction 0.524941792300306 Functional Gain - SYT14 ENSG00000143469 CDS Human protein_coding chr1:210267714 chr1:210267718 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_106136 0 0 0 0 1 unknown 0.500231641918527 0.500231643832295 0 3.82753495564714e-09 hm5C_site_59281 DeepMRMD:0;iRNA_m5C:3.82753495564714e-09 59282 chr15 90320436 90320436 1 + C G HNSC 90320432 + 90320412 90320452 41 CCCAAGGCTGTCCCTGGACGCAGTCGTCCCCAGAGCCCCGG CCCAAGGCTGTCCCTGGACGCAGTGGTCCCCAGAGCCCCGG < 41bp 0.535190217422658 0.797652216952468 0.21509448 0.32557917 prediction 0.524923999059621 Functional Gain - MESP2 ENSG00000188095 CDS Human protein_coding chr15:90320432 chr15:90320436 nonsynonymous SNV 0.018 1 25 hm5C_associated_SNPs_106137 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_59282 DeepMRMD:0;iRNA_m5C:0 59283 chr4 139936967 139936967 1 + C G rs192413106 139936963 + 139936943 139936983 41 CCGACGCAGCGGTGTTGCACCTCCCTCTCCGGCTCTGCTGC CCGACGCAGCGGTGTTGCACCTCCGTCTCCGGCTCTGCTGC < 41bp 0.534777346127104 0.797239217232576 0.30878407 0.25432193 prediction 0.524923742210944 Functional Gain - NOCT ENSG00000151014 UTR5 Human protein_coding chr4:139936963 chr4:139936967 . . 0 25 hm5C_associated_SNPs_106138 0 0 1 0 0 chromatin 0.500231643921245 0.50023164392864 0 1.47888368218219e-11 hm5C_site_59283 DeepMRMD:0;iRNA_m5C:1.47888368218219e-11 59284 chr21 43833142 43833142 1 + C G BLCA 43833141 + 43833121 43833161 41 CTGTCCCCTTAGTGTGAAGACCAGAAGGTGGAATGCCTGTA CTGTCCCCTTAGTGTGAAGACGAGAAGGTGGAATGCCTGTA < 41bp 0.449259281702927 0.762455046211301 0.29239956 0.42780286 prediction 0.524910092422602 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43833141 chr21:43833142 nonsynonymous SNV 0.998 0 22 hm5C_associated_SNPs_106139 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_59284 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 59285 chr7 142962124 142962124 1 + T C rs147245180 142962122 + 142962102 142962142 41 CGTTTCCTCACCGCCGTGAACTTGGAGCATCCAGAGATGCT CGTTTCCTCACCGCCGTGAACTCGGAGCATCCAGAGATGCT < 41bp 0.495499028723916 0.762452192833608 0.17606884 0.16162616 prediction 0.524904385667216 Functional Gain - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142962122 chr7:142962124 nonsynonymous SNV 0.607 0 23 hm5C_associated_SNPs_106140 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921308 0 4.31876756579186e-13 hm5C_site_59285 DeepMRMD:0;iRNA_m5C:4.31876756579186e-13 59286 chrX 10176347 10176347 1 + C A UCEC 10176346 + 10176326 10176366 41 CCACCAGGCTGGGGAAGTACCCGGTGCTGGAGGTCATTGTG CCACCAGGCTGGGGAAGTACCAGGTGCTGGAGGTCATTGTG < 41bp 0.519976712927624 0.782428417788357 0.81839406 0.90588987 prediction 0.524903409721466 Functional Gain - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10176346 chrX:10176347 nonsynonymous SNV 0.989 5 22 hm5C_associated_SNPs_106141 0 0 0 0 0 Endoplasmic reticulum 0.500231643921986 0.500231643921092 0.17499162 0 hm5C_site_59286 DeepMRMD:0.17499162;iRNA_m5C:0 59287 chr11 5410875 5410875 1 + C G STAD 5410874 + 5410854 5410894 41 TCCTTGCTGGCCCTCACTGACCTGGGGCTGTGTGTGTCCAC TCCTTGCTGGCCCTCACTGACGTGGGGCTGTGTGTGTCCAC < 41bp 0.584795965275918 0.847241264305699 0.14668253 0.80815625 prediction 0.524890598059562 Functional Gain - OR51M1 ENSG00000184698 CDS Human protein_coding chr11:5410874 chr11:5410875 nonsynonymous SNV 0.195 2 22 hm5C_associated_SNPs_106142 0 0 0 0 0 nucleoplasm 0.500231643920808 0.500231643921092 0.6163125 5.69100322422855e-13 hm5C_site_59287 DeepMRMD:0.6163125;iRNA_m5C:5.69100322422855e-13 59288 chr19 13064354 13064354 1 + C A rs376322659 13064350 + 13064330 13064370 41 CCCAGTCTGGCCTTGGCCTCCAGCCTGGAGAAGGGCTAACA CCCAGTCTGGCCTTGGCCTCCAGCATGGAGAAGGGCTAACA < 41bp 0.616283363757148 0.878697314673996 0.8769077 0.46729353 prediction 0.524827901833696 Functional Gain - RAD23A ENSG00000179262 UTR3 Human protein_coding chr19:13064350 chr19:13064354 . . 0 25 hm5C_associated_SNPs_106143 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59288 DeepMRMD:0;iRNA_m5C:0 59289 chr19 34302347 34302347 1 + C T SKCM 34302346 + 34302326 34302366 41 GCCCTCATCGAGGAGGTCTTCCCCGAGACCGGAGACGTCAT GCCCTCATCGAGGAGGTCTTCTCCGAGACCGGAGACGTCAT < 41bp 0.518833226869556 0.781244250157332 0.12007934 0.22447532 prediction 0.524822046575551 Functional Gain - KCTD15 ENSG00000153885 CDS Human protein_coding chr19:34302346 chr19:34302347 nonsynonymous SNV 0.980 3 22 hm5C_associated_SNPs_106144 0 0 1 0 0 Cytosol 0.500231643907969 0.500231644377719 0 9.39500699459472e-10 hm5C_site_59289 DeepMRMD:0;iRNA_m5C:9.39500699459472e-10 59290 chrX 34961524 34961524 1 + C G LUSC 34961520 + 34961500 34961540 41 TGGGGAATCCTGCCCGCGGCCTCCCGAGACTCCGGTGTCCC TGGGGAATCCTGCCCGCGGCCTCCGGAGACTCCGGTGTCCC < 41bp 0.475916102523674 0.762405684660173 0.090717375 0.31916556 prediction 0.524811369320347 Functional Gain - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961520 chrX:34961524 synonymous SNV . 0 25 hm5C_associated_SNPs_106145 0 0 0 0 0 unknown 0.500231643919555 0.500231643824171 0 0 hm5C_site_59290 DeepMRMD:0;iRNA_m5C:0 59291 chr7 129909536 129909536 1 + C G LUAD 129909535 + 129909515 129909555 41 TTTTGGAAATCACCCACCACCCCAGGGGAGACAGCCCACGT TTTTGGAAATCACCCACCACCGCAGGGGAGACAGCCCACGT < 41bp 0.590895817402784 0.853293357549678 0.099035025 0.30701047 prediction 0.524795080293788 Functional Gain - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129909535 chr7:129909536 nonsynonymous SNV 0.441 1 22 hm5C_associated_SNPs_106146 0 0 0 0 1 exosome 0.500231643921092 0.500231646628064 0 5.41394351571967e-09 hm5C_site_59291 DeepMRMD:0;iRNA_m5C:5.41394351571967e-09 59292 chr8 28573759 28573759 1 + C G rs370320793 28573755 + 28573735 28573775 41 TCTGGATGAGGCTGATGAGGCAGGCAAGCGGATTTTTGGTC TCTGGATGAGGCTGATGAGGCAGGGAAGCGGATTTTTGGTC < 41bp 0.5392694185367 0.801665447191073 0.87713885 0.9071726 prediction 0.524792057308746 Functional Gain - EXTL3 ENSG00000012232 CDS Human protein_coding chr8:28573755 chr8:28573759 synonymous SNV . 0 25 hm5C_associated_SNPs_106147 0 0 0 0 0 Endoplasmic reticulum 0.500231643971429 0.500231643919673 0.0600674999999999 0 hm5C_site_59292 DeepMRMD:0.0600674999999999;iRNA_m5C:0 59293 chr11 109294845 109294845 1 + T G HNSC 109294842 + 109294822 109294862 41 GGCCTCCCGTGCCAGGGTCCCTGTGCTCCTCCGCCTCCACC GGCCTCCCGTGCCAGGGTCCCTGGGCTCCTCCGCCTCCACC < 41bp 0.649462834052811 0.911856323300976 0.1974617 0.904812 prediction 0.524786978496329 Functional Gain - C11orf87 ENSG00000185742 CDS Human protein_coding chr11:109294842 chr11:109294845 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_106148 0 0 0 0 0 exosome 0.500231643891258 0.500251300520011 0.809624 3.93132575067234e-05 hm5C_site_59293 DeepMRMD:0.809624;iRNA_m5C:3.93132575067234e-05 59294 chr19 804074 804074 1 + C G SKCM 804073 + 804053 804093 41 AAGAAGTTCAAAGGTGACAGCCGAAGTGCAGGCGTCCCCTC AAGAAGTTCAAAGGTGACAGCGGAAGTGCAGGCGTCCCCTC < 41bp 0.590143122948199 0.852536509121799 0.33644328 0.660872 prediction 0.5247867723472 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804073 chr19:804074 nonsynonymous SNV 0.418 2 22 hm5C_associated_SNPs_106149 0 0 1 0 1 Cytosol 0.500231643923924 0.500231643922057 0.321744 0 hm5C_site_59294 DeepMRMD:0.321744;iRNA_m5C:0 59295 chr12 70149324 70149324 1 + T G LIHC 70149322 + 70149302 70149342 41 TGTCATCTACCGGCCACACCCTTCAGCTTTATCCTCTGTAC TGTCATCTACCGGCCACACCCTGCAGCTTTATCCTCTGTAC < 41bp 0.5953175568154 0.857704976417199 0.025377035 0.09202331 prediction 0.524774839203598 Functional Gain - RAB3IP ENSG00000127328 CDS Human protein_coding chr12:70149322 chr12:70149324 nonsynonymous SNV 0.949 0 23 hm5C_associated_SNPs_106150 0 0 1 0 0 Cytosol 0.500231379226662 0.500231133266384 0 0 hm5C_site_59295 DeepMRMD:0;iRNA_m5C:0 59296 chr18 61264278 61264278 1 + C G ESCA 61264277 + 61264257 61264297 41 GAAAGGTGAATCTGCACTTGCCCCGGTTTGAGGTGGAGGAC GAAAGGTGAATCTGCACTTGCGCCGGTTTGAGGTGGAGGAC < 41bp 0.581014581449939 0.843399596459581 0.06667969 0.22608277 prediction 0.524770030019283 Functional Gain - SERPINB13 ENSG00000197641 CDS Human protein_coding chr18:61264277 chr18:61264278 nonsynonymous SNV 0.297 5 22 hm5C_associated_SNPs_106151 0 0 0 0 1 unknown 0.500231661567867 0.500231628398904 0 0 hm5C_site_59296 DeepMRMD:0;iRNA_m5C:0 59297 chr19 36351545 36351545 1 + C A rs73928337 36351541 + 36351521 36351561 41 AGCAACGCCGTGGGTAGCGCCAACCGCAGTACTGCGCTGGA AGCAACGCCGTGGGTAGCGCCAACAGCAGTACTGCGCTGGA < 41bp 0.342142240748785 0.762383887169568 0.27489245 0.4604112 prediction 0.524767774339135 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36351541 chr19:36351545 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_106152 0 0 0 0 1 exosome 0.500231643936934 0.500231706964832 0 1.26055796911828e-07 hm5C_site_59297 DeepMRMD:0;iRNA_m5C:1.26055796911828e-07 59298 chr1 152484310 152484310 1 + C G PRAD 152484306 + 152484286 152484326 41 TGGCCAGCAGTCTGGGGGCTCCAGCTGCTGCCACAGCTCTG TGGCCAGCAGTCTGGGGGCTCCAGGTGCTGCCACAGCTCTG < 41bp 0.537900234668153 0.800284114591191 0.8837874 0.89989173 prediction 0.524767759846076 Functional Gain - LCE5A ENSG00000186207 CDS Human protein_coding chr1:152484306 chr1:152484310 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_106153 0 0 0 0 0 exosome 0.500289343511711 0.500231652002915 0.03220866 0 hm5C_site_59298 DeepMRMD:0.03220866;iRNA_m5C:0 59299 chr17 55079432 55079432 1 + C A STAD 55079428 + 55079408 55079448 41 TGGCCAGAACTGCCTAAATTCAGTCAGCTGAAGTGGAAGGC TGGCCAGAACTGCCTAAATTCAGTAAGCTGAAGTGGAAGGC < 41bp 0.349045947502731 0.762382618580971 0.26675075 0.3648625 prediction 0.524765237161942 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55079428 chr17:55079432 nonsynonymous SNV 0.989 1 25 hm5C_associated_SNPs_106154 0 0 1 0 1 Ribosome 0.500231701326654 0.500231643887092 0 0 hm5C_site_59299 DeepMRMD:0;iRNA_m5C:0 59300 chrX 79286216 79286216 1 + C A rs141303126 79286212 + 79286192 79286232 41 AACAGCAACCTCTTGTTTTACCGGCTCCTGAAAGACTAGCA AACAGCAACCTCTTGTTTTACCGGATCCTGAAAGACTAGCA < 41bp 0.369049378244506 0.762375906060987 0.13163272 0.18300852 prediction 0.524751812121974 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79286212 chrX:79286216 nonsynonymous SNV 0.937 0 25 hm5C_associated_SNPs_106155 0 0 0 0 0 unknown 0.500229833340765 0.500231640715812 0 3.61475009591494e-06 hm5C_site_59300 DeepMRMD:0;iRNA_m5C:3.61475009591494e-06 59301 chr3 97887708 97887708 1 + T G COAD 97887706 + 97887686 97887726 41 TCATCTGGAAAGACCCTCACCTTCATATCCCAATGTACTTA TCATCTGGAAAGACCCTCACCTGCATATCCCAATGTACTTA < 41bp 0.582946047271748 0.845305664006201 0.12230605 0.33487952 prediction 0.524719233468907 Functional Gain - OR5H15 ENSG00000233412 CDS Human protein_coding chr3:97887706 chr3:97887708 synonymous SNV . 0 23 hm5C_associated_SNPs_106156 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59301 DeepMRMD:0;iRNA_m5C:0 59302 chr5 140563895 140563895 1 + C G LUSC 140563894 + 140563874 140563914 41 CGAGCCGGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACG CGAGCCGGGCTACCTGGTGACGAAGGTGGTGGCGGTGGACG < 41bp 0.462082166641528 0.762346389674132 0.479583 0.8367337 prediction 0.524692779348264 Functional Gain - PCDHB16 ENSG00000196963 CDS Human other chr5:140563894 chr5:140563895 synonymous SNV . 0 22 hm5C_associated_SNPs_106157 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.6734674 0 hm5C_site_59302 DeepMRMD:0.6734674;iRNA_m5C:0 59303 chr22 38046244 38046244 1 + C A UCEC 38046240 + 38046220 38046260 41 GCGCTGATCCAGAGCGCAGACACCCTCTTCCCTGGAGGTGA GCGCTGATCCAGAGCGCAGACACCATCTTCCCTGGAGGTGA < 41bp 0.330488801974725 0.762345487047054 0.14757472 0.22470537 prediction 0.524690974094108 Functional Gain - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046240 chr22:38046244 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_106158 0 0 1 0 2 cytosol 0.500231643922912 0.500231643920994 0 0 hm5C_site_59303 DeepMRMD:0;iRNA_m5C:0 59304 chr6 154412559 154412559 1 + T G SKCM 154412556 + 154412536 154412576 41 TCCACTCGAATTCGTCAGAACACTAGAGACCACCCCTCCAC TCCACTCGAATTCGTCAGAACACGAGAGACCACCCCTCCAC < 41bp 0.586472839994786 0.848815078390961 0.019038469 0.06577429 prediction 0.52468447679235 Functional Gain - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154412556 chr6:154412559 synonymous SNV . 0 24 hm5C_associated_SNPs_106159 0 0 0 0 1 exosome 0.500231643918259 0.500231644000325 0 1.64132263336114e-10 hm5C_site_59304 DeepMRMD:0;iRNA_m5C:1.64132263336114e-10 59305 chr8 71646066 71646066 1 + T C LGG 71646064 + 71646044 71646084 41 GGTCTCTTGCTGTGCTATTTCTTGGTCAACTGTTGATTATC GGTCTCTTGCTGTGCTATTTCTCGGTCAACTGTTGATTATC < 41bp 0.509171677132765 0.771513371017206 0.29692358 0.27657825 prediction 0.524683387768883 Functional Gain - XKR9 ENSG00000221947 CDS Human protein_coding chr8:71646064 chr8:71646066 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_106160 0 0 0 0 1 exosome 0.500231089516169 0.500231643966985 0 1.10890163163013e-06 hm5C_site_59305 DeepMRMD:0;iRNA_m5C:1.10890163163013e-06 59306 chr9 102595026 102595026 1 + T G LUAD 102595023 + 102595003 102595043 41 CCTGGCAAATAAAAACTGCCCAGTAGACAAGAGACGTCGAA CCTGGCAAATAAAAACTGCCCAGGAGACAAGAGACGTCGAA < 41bp 0.379656490232106 0.762337740262381 0.13846272 0.42724 prediction 0.524675480524762 Functional Gain - NR4A3 ENSG00000119508 CDS Human protein_coding chr9:102595023 chr9:102595026 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_106161 0 0 1 0 2 Cytosol 0.500231643918794 0.500231643921251 0 4.91273688396632e-12 hm5C_site_59306 DeepMRMD:0;iRNA_m5C:4.91273688396632e-12 59307 chr11 64126704 64126704 1 + C A rs547326193 64126700 + 64126680 64126720 41 CCGCGCGGGCCCCAGCGACCCGCCCGCCATGGGGGACGAGG CCGCGCGGGCCCCAGCGACCCGCCAGCCATGGGGGACGAGG < 41bp 0.520645516728189 0.782982322108175 0.06864318 0.2261338 prediction 0.524673610759972 Functional Gain - RPS6KA4 ENSG00000162302 UTR5 Human protein_coding chr11:64126700 chr11:64126704 . . 0 25 hm5C_associated_SNPs_106162 0 0 1 0 1 chromatin 0.500231643920814 0.500231653344247 0 1.88468662898345e-08 hm5C_site_59307 DeepMRMD:0;iRNA_m5C:1.88468662898345e-08 59308 chrX 13681107 13681107 1 + C G UCEC 13681103 + 13681083 13681123 41 GGATGGTGACCCTGAATCCACTGGCAAGAGATCGAGTGAGT GGATGGTGACCCTGAATCCACTGGGAAGAGATCGAGTGAGT < 41bp 0.54802634442796 0.810359693592571 0.18712932 0.42850447 prediction 0.524666698329222 Functional Gain - TCEANC ENSG00000176896 CDS Human protein_coding chrX:13681103 chrX:13681107 synonymous SNV . 0 25 hm5C_associated_SNPs_106163 0 0 0 0 0 Nucleus 0.500231643920078 0.500229929942246 0 0 hm5C_site_59308 DeepMRMD:0;iRNA_m5C:0 59309 chr1 2488119 2488119 1 + G T UCEC 2488123 - 2488103 2488143 41 ATCTCCAGGGAGGAGGCCCCCAGTCTCCAGGAGGCTCCATG ATCTCCAGGGAGGAGGCCCCCAGTATCCAGGAGGCTCCATG < 41bp 0.418947102013726 0.762326066710245 0.531283 0.5341241 prediction 0.52465213342049 Functional Gain - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2488123 chr1:2488119 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_106164 0 0 0 0 1 Ribosome 0.500231643921954 0.500231643921092 0.00568220000000008 0 hm5C_site_59309 DeepMRMD:0.00568220000000008;iRNA_m5C:0 59310 chr11 61533653 61533653 1 + C A LUAD 61533649 + 61533629 61533669 41 AAGCCCTTCCCGGGGGGCACCGGGCCCCCCATCAAGGCTGA AAGCCCTTCCCGGGGGGCACCGGGACCCCCATCAAGGCTGA < 41bp 0.647535285748083 0.909854171144678 0.9105513 0.91925734 prediction 0.524637770793192 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61533649 chr11:61533653 nonsynonymous SNV 0.900 1 25 hm5C_associated_SNPs_106165 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921093 0.0174120800000002 2.22044604925031e-16 hm5C_site_59310 DeepMRMD:0.0174120800000002;iRNA_m5C:2.22044604925031e-16 59311 chr21 46021391 46021391 1 + T A CESC 46021387 + 46021367 46021407 41 GCCTGTCTGCTCTGGGGCTTCCAGTTCATGCTGCCAGCAGT GCCTGTCTGCTCTGGGGCTTCCAGATCATGCTGCCAGCAGT < 41bp 0.472592971204187 0.762304162638233 0.123016 0.25069982 prediction 0.524608325276466 Functional Gain - KRTAP10-7 ENSG00000205441 CDS Human other chr21:46021387 chr21:46021391 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_106166 0 0 0 0 0 unknown 0.500231756420209 0.500231638021352 0 0 hm5C_site_59311 DeepMRMD:0;iRNA_m5C:0 59312 chr12 52307367 52307367 1 + C G LUAD 52307363 + 52307343 52307383 41 CCACCCAACCTCCTTCGGAGCAGCCGGGAACAGATGGCCAG CCACCCAACCTCCTTCGGAGCAGCGGGGAACAGATGGCCAG < 41bp 0.464767653697775 0.762302785004898 0.30702198 0.5765937 prediction 0.524605570009796 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52307363 chr12:52307367 nonsynonymous SNV 0.157 1 25 hm5C_associated_SNPs_106167 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921088 0.1531874 0 hm5C_site_59312 DeepMRMD:0.1531874;iRNA_m5C:0 59313 chr16 2132740 2132740 1 + C A rs560393153 2132736 + 2132716 2132756 41 GTTCCCACGCTGTGCGAGCACTCCCGGCCCAGCTTCAGGCC GTTCCCACGCTGTGCGAGCACTCCAGGCCCAGCTTCAGGCC < 41bp 0.369978168998248 0.762299260311435 0.15679029 0.9181144 prediction 0.52459852062287 Functional Gain - TSC2 ENSG00000103197 intronic Human protein_coding chr16:2132736 chr16:2132740 . . 0 25 hm5C_associated_SNPs_106168 0 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0.500231643921087 0.8362288 0 hm5C_site_59313 DeepMRMD:0.8362288;iRNA_m5C:0 59314 chr1 197890772 197890772 1 + T G rs183473436 197890770 + 197890750 197890790 41 AGCCCAGCGCTGGGAGTGGACATCGTCAATTACAACTCAGG AGCCCAGCGCTGGGAGTGGACAGCGTCAATTACAACTCAGG < 41bp 0.407025896479436 0.762298627569636 0.0469099 0.32835105 prediction 0.524597255139273 Functional Gain - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197890770 chr1:197890772 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106169 0 0 0 0 1 exosome 0.500231644517775 0.500407513328218 0 0.000351737620886361 hm5C_site_59314 DeepMRMD:0;iRNA_m5C:0.000351737620886361 59315 chr19 36207502 36207502 1 + C A OV 36207498 + 36207478 36207518 41 TGCTCCCTGTGCGGGGCCGGCTGTCCCAGCCTGGCCTCCAT TGCTCCCTGTGCGGGGCCGGCTGTACCAGCCTGGCCTCCAT < 41bp 0.370060281307779 0.762295578896489 0.29952085 0.53022414 prediction 0.524591157792978 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207498 chr19:36207502 nonsynonymous SNV 0.995 0 25 hm5C_associated_SNPs_106170 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0.0604482799999999 0 hm5C_site_59315 DeepMRMD:0.0604482799999999;iRNA_m5C:0 59316 chr1 51440093 51440093 1 + C A rs12855 51440089 + 51440069 51440109 41 CATAAGTGAAAATCTTACAACAGGCTTATGAATATATTTAA CATAAGTGAAAATCTTACAACAGGATTATGAATATATTTAA < 41bp 0.398213217788536 0.762286940112623 0.26719213 0.22347715 prediction 0.524573880225245 Functional Gain - CDKN2C ENSG00000123080 UTR3 Human protein_coding chr1:51440089 chr1:51440093 . . 0 25 hm5C_associated_SNPs_106171 0 1 1 4 0 Cytosol 0.500231678460618 0.500231700136774 0 4.33523121845525e-08 hm5C_site_59316 DeepMRMD:0;iRNA_m5C:4.33523121845525e-08 59317 chr17 73780975 73780975 1 + C G UCEC 73780974 + 73780954 73780994 41 ACAAGACCATGTCGAAGGGCCCCGGGCCCGGCGGCTCCGCA ACAAGACCATGTCGAAGGGCCGCGGGCCCGGCGGCTCCGCA < 41bp 0.57983726630898 0.842120565769399 0.30183074 0.56679565 prediction 0.524566598920837 Functional Gain - UNK ENSG00000132478 CDS Human protein_coding chr17:73780974 chr17:73780975 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_106172 0 0 1 0 1 Cytosol 0.500233497230191 0.500231816689243 0.1335913 0 hm5C_site_59317 DeepMRMD:0.1335913;iRNA_m5C:0 59318 chrX 21392788 21392788 1 + C G rs113862020 21392787 + 21392767 21392807 41 TTAGCGGGAACTGAGCAGACCCGGCGCGGAGCCACGACTCC TTAGCGGGAACTGAGCAGACCGGGCGCGGAGCCACGACTCC < 41bp 0.501747809747812 0.764027057620253 0.7219152 0.78996813 prediction 0.524558495744881 Functional Gain - CNKSR2 ENSG00000149970 UTR5 Human protein_coding chrX:21392787 chrX:21392788 . . 0 22 hm5C_associated_SNPs_106173 0 0 0 0 0 exosome 0.500231643921092 0.500231643921085 0.13610586 0 hm5C_site_59318 DeepMRMD:0.13610586;iRNA_m5C:0 59319 chr19 56125944 56125944 1 + C G rs2280254 56125943 + 56125923 56125963 41 CTCGGGCCCTCCAGCCACGCCCGTGGCGCCTGCCCCCTCCG CTCGGGCCCTCCAGCCACGCCGGTGGCGCCTGCCCCCTCCG < 41bp 0.472424725246565 0.762276115911756 0.16133693 0.43139434 prediction 0.524552231823512 Functional Gain - ZNF865 ENSG00000261221 CDS Human protein_coding chr19:56125943 chr19:56125944 synonymous SNV . 0 22 hm5C_associated_SNPs_106174 0 0 0 0 0 chromatin 0.500231643962455 0.50023165997085 0 3.20167885536904e-08 hm5C_site_59319 DeepMRMD:0;iRNA_m5C:3.20167885536904e-08 59320 chrX 48399815 48399815 1 + C A LUAD 48399811 + 48399791 48399831 41 TGTTGCAGCACATCCTCATCCGAGCCTTTGATTTGAGTGGG TGTTGCAGCACATCCTCATCCGAGACTTTGATTTGAGTGGG < 41bp 0.536802941447568 0.799074732637027 0.29837465 0.43036777 prediction 0.524543582378918 Functional Gain - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48399811 chrX:48399815 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106175 0 0 0 0 3 nucleolus 0.500231638843029 0.500231378246247 0 0 hm5C_site_59320 DeepMRMD:0;iRNA_m5C:0 59321 chr6 35196434 35196434 1 + T C UCEC 35196432 + 35196412 35196452 41 AGGATAATGCAGGTTGTGTGCATGACTGTGTCAACATCCCT AGGATAATGCAGGTTGTGTGCACGACTGTGTCAACATCCCT < 41bp 0.493189066369381 0.762271192511667 0.13396612 0.114084244 prediction 0.524542385023334 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35196432 chr6:35196434 synonymous SNV . 0 23 hm5C_associated_SNPs_106176 0 0 1 0 2 Nucleus 0.500226916474549 0.50022950046091 0 5.16797272176461e-06 hm5C_site_59321 DeepMRMD:0;iRNA_m5C:5.16797272176461e-06 59322 chr11 57947154 57947154 1 + C G BLCA 57947153 + 57947133 57947173 41 TACTCATCTATCACTGTCCCCCAGATGCTGGCAGTGCTGCT TACTCATCTATCACTGTCCCCGAGATGCTGGCAGTGCTGCT < 41bp 0.455727364268219 0.762256725017706 0.13188797 0.22525623 prediction 0.524513450035412 Functional Gain - OR9Q1 ENSG00000186509 CDS Human protein_coding chr11:57947153 chr11:57947154 nonsynonymous SNV 0.650 3 22 hm5C_associated_SNPs_106177 0 0 0 0 0 nucleus 0.500231689918305 0.500231643921737 0 0 hm5C_site_59322 DeepMRMD:0;iRNA_m5C:0 59323 chr19 17886898 17886898 1 + C A LUSC 17886894 + 17886874 17886914 41 GCCTGCCCCGGCCCGGGCTCCAGCCTGCAGCCCCGAGGCAG GCCTGCCCCGGCCCGGGCTCCAGCATGCAGCCCCGAGGCAG < 41bp 0.653139556013879 0.915394795903344 0.30141407 0.29743114 prediction 0.524510479778929 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17886894 chr19:17886898 synonymous SNV . 0 25 hm5C_associated_SNPs_106178 0 0 0 0 1 Cytosol 0.50023435396753 0.500231643921096 0 0 hm5C_site_59323 DeepMRMD:0;iRNA_m5C:0 59324 chr5 52405693 52405693 1 + C A rs62621806 52405689 + 52405669 52405709 41 AGCATGCGCACAACCAGCTCCGCCCCGCGCCGGGCTCTAGC AGCATGCGCACAACCAGCTCCGCCACGCGCCGGGCTCTAGC < 41bp 0.380574930940561 0.762252414583931 0.051246226 0.47281107 prediction 0.524504829167862 Functional Gain - LOC257396 ENSG00000247796 ncRNA_exonic Human antisense chr5:52405689 chr5:52405693 . . 0 25 hm5C_associated_SNPs_106179 0 0 0 0 0 unknown 0.500231643920774 0.500231639853159 0 0 hm5C_site_59324 DeepMRMD:0;iRNA_m5C:0 59325 chr8 104384794 104384794 1 + T A LUAD 104384790 + 104384770 104384810 41 GGGTCTTCATATGTGGCCGCCAGGTAGGAGCATCACAGTCA GGGTCTTCATATGTGGCCGCCAGGAAGGAGCATCACAGTCA < 41bp 0.478118935712924 0.762251347246815 0.3458201 0.20716178 prediction 0.52450269449363 Functional Gain - CTHRC1 ENSG00000164932 CDS Human protein_coding chr8:104384790 chr8:104384794 synonymous SNV . 0 25 hm5C_associated_SNPs_106180 0 0 0 0 1 nucleus 0.500231644036197 0.500231643909516 0 0 hm5C_site_59325 DeepMRMD:0;iRNA_m5C:0 59326 chr10 26789811 26789811 1 + T G COAD 26789809 + 26789789 26789829 41 ATGGCAGATCTGGTAGCAGACATAAGTGAGGCTGAGCAGAG ATGGCAGATCTGGTAGCAGACAGAAGTGAGGCTGAGCAGAG < 41bp 0.615344904931839 0.877587603971006 0.50859946 0.7591048 prediction 0.524485398078334 Functional Gain - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26789809 chr10:26789811 nonsynonymous SNV 0.959 4 23 hm5C_associated_SNPs_106181 0 0 0 0 0 nucleus 0.500232590165868 0.500231654244313 0.50101068 0 hm5C_site_59326 DeepMRMD:0.50101068;iRNA_m5C:0 59327 chr16 57398817 57398817 1 + C G rs223823 57398813 + 57398793 57398833 41 CAACCTCGACCTCCTGGGTTCAAGCGATTCTCCCACCCCAG CAACCTCGACCTCCTGGGTTCAAGGGATTCTCCCACCCCAG < 41bp 0.498054885343302 0.762234493744507 0.6602574 0.91781396 prediction 0.524468987489015 Functional Gain - CCL22 ENSG00000102962 UTR3 Human protein_coding chr16:57398813 chr16:57398817 . . 0 25 hm5C_associated_SNPs_106182 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.51511312 0 hm5C_site_59327 DeepMRMD:0.51511312;iRNA_m5C:0 59328 chr12 5153926 5153926 1 + C G COAD 5153922 + 5153902 5153942 41 GCGGACGAGATACGCTTCTACCAGCTGGGGGACGAGGCCAT GCGGACGAGATACGCTTCTACCAGGTGGGGGACGAGGCCAT < 41bp 0.485535629420638 0.762225026573274 0.33353323 0.7753727 prediction 0.524450053146547 Functional Gain - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5153922 chr12:5153926 nonsynonymous SNV 0.627 2 25 hm5C_associated_SNPs_106183 0 0 0 0 0 exosome 0.500231646149487 0.50023164022725 0.5507454 0 hm5C_site_59328 DeepMRMD:0.5507454;iRNA_m5C:0 59329 chr19 44653030 44653030 1 + T C GBM 44653028 + 44653008 44653048 41 CAAGATGTGATGCTGGAGAACTTCAGGAACCTGCTGTCAGT CAAGATGTGATGCTGGAGAACTCCAGGAACCTGCTGTCAGT < 41bp 0.483540346900997 0.762216557372498 0.17327744 0.93580234 prediction 0.524433114744997 Functional Gain - ZNF234 ENSG00000263002 CDS Human protein_coding chr19:44653028 chr19:44653030 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_106184 0 0 1 0 1 exosome 0.500231643921092 0.500231643921092 0.87160468 0 hm5C_site_59329 DeepMRMD:0.87160468;iRNA_m5C:0 59330 chr7 128851576 128851576 1 + C T LUAD 128851575 + 128851555 128851595 41 CTCGGAGAGGAGCCATACTGCCCCAGGATATTTCTGTCACC CTCGGAGAGGAGCCATACTGCTCCAGGATATTTCTGTCACC < 41bp 0.516201445592057 0.778415326248523 0.11832327 0.5061993 prediction 0.524427761312932 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128851575 chr7:128851576 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_106185 0 0 1 0 2 cytosol 0.500231589240146 0.500231619749677 0.0123986 6.10190620253803e-08 hm5C_site_59330 DeepMRMD:0.0123986;iRNA_m5C:6.10190620253803e-08 59331 chr21 47986544 47986544 1 + C T UCEC 47986543 + 47986523 47986563 41 CTCAGAGGCATGCGGTACCACCCCATCGACATTGAGACCTC CTCAGAGGCATGCGGTACCACTCCATCGACATTGAGACCTC < 41bp 0.518539830925545 0.780735764955615 0.017842352 0.95881164 prediction 0.524391868060139 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47986543 chr21:47986544 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_106186 0 0 0 0 2 Cytosol 0.500231642103453 0.500231632316227 0.91762328 0 hm5C_site_59331 DeepMRMD:0.91762328;iRNA_m5C:0 59332 chr7 158734715 158734715 1 + C A UCEC 158734711 + 158734691 158734731 41 ACGGACAGCCATGCGGTCACCGGCCTGCAGTGGTCCCCAAC ACGGACAGCCATGCGGTCACCGGCATGCAGTGGTCCCCAAC < 41bp 0.657116665621091 0.919308143507909 0.42253712 0.7236879 prediction 0.524382955773637 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158734711 chr7:158734715 nonsynonymous SNV 0.565 3 25 hm5C_associated_SNPs_106187 0 0 0 0 1 Nucleus 0.50023159166163 0.500231643903948 0.4473758 1.04484636276325e-07 hm5C_site_59332 DeepMRMD:0.4473758;iRNA_m5C:1.04484636276325e-07 59333 chr5 43616103 43616103 1 + C G HNSC 43616102 + 43616082 43616122 41 ACTACAGTTCTGGCAATGGACCAGGTTCCAAGAGTCACAAT ACTACAGTTCTGGCAATGGACGAGGTTCCAAGAGTCACAAT < 41bp 0.46119452348515 0.762185948191746 0.32680744 0.78242296 prediction 0.524371896383493 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43616102 chr5:43616103 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_106188 0 0 0 0 1 Endoplasmic reticulum 0.500231644352768 0.500231641273208 0.56484592 0 hm5C_site_59333 DeepMRMD:0.56484592;iRNA_m5C:0 59334 chr12 58190184 58190184 1 + C A rs62000432 58190180 + 58190160 58190200 41 CAGCATGTGGTGGGCATGGCCCCCCTCTCTGTTGGCTCCCT CAGCATGTGGTGGGCATGGCCCCCATCTCTGTTGGCTCCCT < 41bp 0.355844093869724 0.762183721582399 0.053237528 0.04327771 prediction 0.524367443164799 Functional Gain - TSFM ENSG00000123297 CDS Human protein_coding chr12:58190180 chr12:58190184 nonsynonymous SNV 0.981 0 25 hm5C_associated_SNPs_106189 2 0 1 0 0 Cytosol 0.500231643921092 0.500231643922348 0 2.51021425867748e-12 hm5C_site_59334 DeepMRMD:0;iRNA_m5C:2.51021425867748e-12 not provided not provided 59335 chr3 98251255 98251255 1 + C A READ 98251251 + 98251231 98251271 41 CTGCAGTGTCCTCCTGCTCACTTGCATGAGTGTTGACCGCT CTGCAGTGTCCTCCTGCTCACTTGAATGAGTGTTGACCGCT < 41bp 0.360762853559996 0.762181111558983 0.07528564 0.14845636 prediction 0.524362223117965 Functional Gain - GPR15 ENSG00000154165 CDS Human protein_coding chr3:98251251 chr3:98251255 stopgain 0.786 1 25 hm5C_associated_SNPs_106190 0 0 0 0 0 exosome 0.500231644752291 0.500231642709906 0 0 hm5C_site_59335 DeepMRMD:0;iRNA_m5C:0 59336 chr10 98714729 98714729 1 + C G rs61752726 98714725 + 98714705 98714745 41 ATTAGGCGACCTGGGAGACCCAGCCAGTACCGCCCAGACGG ATTAGGCGACCTGGGAGACCCAGCGAGTACCGCCCAGACGG < 41bp 0.485849905774938 0.762179799047217 0.114184886 0.3887851 prediction 0.524359598094434 Functional Gain - LCOR ENSG00000196233 CDS Human protein_coding chr10:98714725 chr10:98714729 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106191 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921094 0 3.77475828372553e-15 hm5C_site_59336 DeepMRMD:0;iRNA_m5C:3.77475828372553e-15 59337 chr17 73736913 73736913 1 + C G BRCA 73736909 + 73736889 73736929 41 AGGCAGATCTCCGGTGTACACAAGCTCCAGCAGACCAAGTT AGGCAGATCTCCGGTGTACACAAGGTCCAGCAGACCAAGTT < 41bp 0.551085902748053 0.813265179356 0.4074512 0.9011715 prediction 0.524358553215893 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73736909 chr17:73736913 nonsynonymous SNV 0.978 0 25 hm5C_associated_SNPs_106192 0 0 0 0 2 Cytosol 0.500231574081343 0.50023164392 0.802343 1.39677313715225e-07 hm5C_site_59337 DeepMRMD:0.802343;iRNA_m5C:1.39677313715225e-07 59338 chr16 19091074 19091074 1 + T A rs149280117 19091070 + 19091050 19091090 41 GCCCTGCATTTAATCAGCACCTGATGACTTGGCAGGACTTG GCCCTGCATTTAATCAGCACCTGAAGACTTGGCAGGACTTG < 41bp 0.514616524423952 0.776792463161246 0.06316668 0.065790474 prediction 0.524351877474588 Functional Gain - COQ7 ENSG00000167186 UTR3 Human protein_coding chr16:19091070 chr16:19091074 . . 0 25 hm5C_associated_SNPs_106193 0 0 1 0 0 Ribosome 0.500231646965444 0.500231986834541 0 6.79738192177481e-07 hm5C_site_59338 DeepMRMD:0;iRNA_m5C:6.79738192177481e-07 59339 chr4 100521877 100521877 1 + T G COAD 100521875 + 100521855 100521895 41 TCTCATCCCAATGAAGAACTCCTGAGAGCCCTCATTGTAAG TCTCATCCCAATGAAGAACTCCGGAGAGCCCTCATTGTAAG < 41bp 0.426380058047255 0.762174836955423 0.056795716 0.1346544 prediction 0.524349673910846 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100521875 chr4:100521877 nonsynonymous SNV 0.958 4 23 hm5C_associated_SNPs_106194 0 0 1 0 1 cytosol 0.500231643921092 0.50023164392046 0 0 hm5C_site_59339 DeepMRMD:0;iRNA_m5C:0 59340 chr16 87730939 87730939 1 + T A rs11859305 87730935 + 87730915 87730955 41 GAGAAGCCGACTCCCCACACCGAGTTTTAAAGCAAAGCCCT GAGAAGCCGACTCCCCACACCGAGATTTAAAGCAAAGCCCT < 41bp 0.544325613659549 0.806484563963515 0.085082114 0.30399337 prediction 0.524317900607931 Functional Gain - JPH3 ENSG00000154118 UTR3 Human protein_coding chr16:87730935 chr16:87730939 . . 0 25 hm5C_associated_SNPs_106195 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_59340 DeepMRMD:0;iRNA_m5C:0 59341 chr3 183855595 183855595 1 + T A LIHC 183855591 + 183855571 183855611 41 ACCAGAGCCCTTGAGGAACACAGGTCAGGATGGGAAAATGA ACCAGAGCCCTTGAGGAACACAGGACAGGATGGGAAAATGA < 41bp 0.505614579095588 0.767767071623751 0.123933434 0.19478771 prediction 0.524304985056326 Functional Gain - EIF2B5 ENSG00000145191 splicing Human protein_coding chr3:183855591 chr3:183855595 . 0.998 0 25 hm5C_associated_SNPs_106196 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59341 DeepMRMD:0;iRNA_m5C:0 59342 chr12 57881962 57881962 1 + T A KIRC 57881958 + 57881938 57881978 41 CCCGGGGCAGAGCAGAGGTGCTCATCAGCACTGTAGGCCCG CCCGGGGCAGAGCAGAGGTGCTCAACAGCACTGTAGGCCCG < 41bp 0.432945456859914 0.76214426067922 0.5767517 0.778434 prediction 0.52428852135844 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57881958 chr12:57881962 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_106197 0 0 1 0 1 Cytosol 0.50023164392227 0.500231643920967 0.4033646 0 hm5C_site_59342 DeepMRMD:0.4033646;iRNA_m5C:0 59343 chr1 201757670 201757670 1 + C A UCEC 201757666 + 201757646 201757686 41 CCCACCCACGAGGCGGCCTTCGAGCTGTACAGCGGCTCCCA CCCACCCACGAGGCGGCCTTCGAGATGTACAGCGGCTCCCA < 41bp 0.373689063806103 0.76213636113884 0.8938843 0.91772854 prediction 0.52427272227768 Functional Gain - NAV1 ENSG00000134369 CDS Human protein_coding chr1:201757666 chr1:201757670 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_106198 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921088 0.0476884800000001 0 hm5C_site_59343 DeepMRMD:0.0476884800000001;iRNA_m5C:0 59344 chr2 239140713 239140713 1 + C A SARC 239140709 + 239140689 239140729 41 GGTAGAAGGAATTCTGCATGCCCCCGATGCTGGCTGGAGAA GGTAGAAGGAATTCTGCATGCCCCAGATGCTGGCTGGAGAA < 41bp 0.378568486607035 0.762126319202573 0.017902076 0.03813377 prediction 0.524252638405146 Functional Gain - LOC643387 ENSG00000225057 ncRNA_exonic Human processed_transcript chr2:239140709 chr2:239140713 . . 0 25 hm5C_associated_SNPs_106199 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59344 DeepMRMD:0;iRNA_m5C:0 59345 chr3 179478937 179478937 1 + C G LUAD 179478936 + 179478916 179478956 41 GTCATCAGTGATGCAGCTGGCCGAGATGGGTTTCCCGCTGG GTCATCAGTGATGCAGCTGGCGGAGATGGGTTTCCCGCTGG < 41bp 0.451165638814 0.762121943357931 0.35079294 0.8837244 prediction 0.524243886715862 Functional Gain - USP13 ENSG00000058056 CDS Human protein_coding chr3:179478936 chr3:179478937 synonymous SNV . 0 22 hm5C_associated_SNPs_106200 0 0 0 0 1 Ribosome 0.500231643289333 0.500231643345119 0.7674488 1.11572306948915e-10 hm5C_site_59345 DeepMRMD:0.7674488;iRNA_m5C:1.11572306948915e-10 59346 chr7 150094834 150094834 1 + C A rs566052247 150094830 + 150094810 150094850 41 CGAGGCCGCGGAGCTCCCAACGGTCCCCGGGGGCCCGGGAC CGAGGCCGCGGAGCTCCCAACGGTACCCGGGGGCCCGGGAC < 41bp 0.631073123431867 0.893194002355426 0.48992878 0.7631806 prediction 0.524241757847117 Functional Gain - ZNF775 ENSG00000196456 CDS Human protein_coding chr7:150094830 chr7:150094834 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_106201 0 0 0 0 0 Cytosol 0.500231643921115 0.500231643921091 0.5263612 0 hm5C_site_59346 DeepMRMD:0.5263612;iRNA_m5C:0 59347 chr12 114846029 114846029 1 + C G rs148864662 114846025 + 114846005 114846045 41 GTCTGCGCAGCCACAGGTTCCGGACGTCTTGGCCCCGGGAA GTCTGCGCAGCCACAGGTTCCGGAGGTCTTGGCCCCGGGAA < 41bp 0.554377512306928 0.816496279851837 0.77903545 0.92144287 prediction 0.524237535089819 Functional Gain - TBX5-AS1 ENSG00000255399 ncRNA_exonic Human antisense chr12:114846025 chr12:114846029 . . 0 25 hm5C_associated_SNPs_106202 1 0 0 0 0 unknown 0.500231643921092 0.500231643907697 0.28481484 0 hm5C_site_59347 DeepMRMD:0.28481484;iRNA_m5C:0 Holt-Oram syndrome Holt-Oram syndrome 59348 chr12 57919750 57919750 1 + C T SKCM 57919749 + 57919729 57919769 41 AGCGGCCAAGGCACAGCATCCCCCACTACCCCCTCCCAGCA AGCGGCCAAGGCACAGCATCCTCCACTACCCCCTCCCAGCA < 41bp 0.515803648119923 0.777920269097599 0.020730585 0.8777594 prediction 0.524233241955351 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57919749 chr12:57919750 synonymous SNV . 0 22 hm5C_associated_SNPs_106203 0 0 1 0 0 chromatin 0.500231643896326 0.50023164398267 0.7555188 1.72688530142295e-10 hm5C_site_59348 DeepMRMD:0.7555188;iRNA_m5C:1.72688530142295e-10 59349 chr1 156880506 156880506 1 + C G LAML 156880502 + 156880482 156880522 41 CGAACGGGACCTGCTACTGCCTGGCTGGCTGGACAGGCCCC CGAACGGGACCTGCTACTGCCTGGGTGGCTGGACAGGCCCC < 41bp 0.552153118190876 0.81424009893308 0.054760158 0.3444401 prediction 0.524173961484409 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156880502 chr1:156880506 nonsynonymous SNV 0.995 1 25 hm5C_associated_SNPs_106204 0 0 0 0 1 cytosol 0.500231643919306 0.500231643921092 0 3.57203155942898e-12 hm5C_site_59349 DeepMRMD:0;iRNA_m5C:3.57203155942898e-12 59350 chr2 219492826 219492826 1 + C A BLCA 219492822 + 219492802 219492842 41 TCTAAGGATGGAGACATCTTCAACCCAGCCTGCCTCCCCAT TCTAAGGATGGAGACATCTTCAACACAGCCTGCCTCCCCAT < 41bp 0.339260601330703 0.762078716537207 0.31964648 0.07300523 prediction 0.524157433074413 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219492822 chr2:219492826 nonsynonymous SNV 0.885 1 25 hm5C_associated_SNPs_106205 0 0 0 0 1 chromatin 0.500231643902372 0.500231804414255 0 3.21023765348372e-07 hm5C_site_59350 DeepMRMD:0;iRNA_m5C:3.21023765348372e-07 59351 chr19 54647834 54647834 1 + C A LUAD 54647830 + 54647810 54647850 41 CCTGGCCCAGAAGGTAGATCCTGCCCAGAAGGAGAAGGAAG CCTGGCCCAGAAGGTAGATCCTGCACAGAAGGAGAAGGAAG < 41bp 0.339152223642028 0.762069347883976 0.07012877 0.1975756 prediction 0.524138695767952 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54647830 chr19:54647834 synonymous SNV . 0 25 hm5C_associated_SNPs_106206 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59351 DeepMRMD:0;iRNA_m5C:0 59352 chr7 148876129 148876129 1 + T A rs61732817 148876125 + 148876105 148876145 41 CCACAGGCGGACCTCAGCAGCACCTCCCAGGACCATGCCAG CCACAGGCGGACCTCAGCAGCACCACCCAGGACCATGCCAG < 41bp 0.44159593141791 0.762068345363032 0.06062773 0.06214243 prediction 0.524136690726065 Functional Gain - ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148876125 chr7:148876129 nonsynonymous SNV 0.852 0 25 hm5C_associated_SNPs_106207 0 0 1 0 0 chromatin 0.500231915055178 0.500232288267414 0 7.464244724531e-07 hm5C_site_59352 DeepMRMD:0;iRNA_m5C:7.464244724531e-07 59353 chr1 74665428 74665428 1 + C A LIHC 74665424 + 74665404 74665444 41 GAAAAACAGGAACTTGCTTACAACCAACAGCTGTCAGAAAA GAAAAACAGGAACTTGCTTACAACAAACAGCTGTCAGAAAA < 41bp 0.352184722226113 0.762066324044832 0.20163992 0.33222368 prediction 0.524132648089664 Functional Gain - FPGT;FPGT-TNNI3K ENSG00000116783;ENSG00000254685;ENSG00000259030 CDS Human other chr1:74665424 chr1:74665428 nonsynonymous SNV 0.993 0 25 hm5C_associated_SNPs_106208 0 0 1 0 2 unknown 0.500231643911362 0.50023164571527 0 3.60781560182488e-09 hm5C_site_59353 DeepMRMD:0;iRNA_m5C:3.60781560182488e-09 59354 chr19 4219596 4219596 1 + T C THYM 4219594 + 4219574 4219614 41 GGCTTGGGCCACAGGTGCAGCGTGAGGCCCTGTTCATGAAG GGCTTGGGCCACAGGTGCAGCGCGAGGCCCTGTTCATGAAG < 41bp 0.506395593288061 0.768450083537517 0.7497333 0.8256204 prediction 0.524108980498911 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4219594 chr19:4219596 synonymous SNV . 0 23 hm5C_associated_SNPs_106209 0 0 0 0 1 exosome 0.50023162629681 0.500231643922558 0.1517742 3.52514966106554e-08 hm5C_site_59354 DeepMRMD:0.1517742;iRNA_m5C:3.52514966106554e-08 59355 chr7 123303181 123303181 1 + C A UCEC 123303177 + 123303157 123303197 41 AGAAAATGGAAGACAGTTCCCGACCTTCTACCCCACAGAGA AGAAAATGGAAGACAGTTCCCGACATTCTACCCCACAGAGA < 41bp 0.35542995153472 0.762053630731734 0.08103576 0.11652064 prediction 0.524107261463467 Functional Gain - LMOD2 ENSG00000170807 CDS Human protein_coding chr7:123303177 chr7:123303181 nonsynonymous SNV 0.992 2 25 hm5C_associated_SNPs_106210 0 0 0 0 1 exosome 0.500231643876379 0.50023162151793 0 0 hm5C_site_59355 DeepMRMD:0;iRNA_m5C:0 59356 chr16 57417868 57417868 1 + C G rs2239350 57417867 + 57417847 57417887 41 ACAGACCCTGCCCTGTGGGCCCCCAAATGGAAATGGGCAGA ACAGACCCTGCCCTGTGGGCCGCCAAATGGAAATGGGCAGA < 41bp 0.481363475863812 0.762033851670205 0.040329486 0.59262973 prediction 0.52406770334041 Functional Gain - CX3CL1 ENSG00000006210 UTR3 Human protein_coding chr16:57417867 chr16:57417868 . . 0 22 hm5C_associated_SNPs_106211 0 0 1 0 0 nucleus 0.500231643921325 0.500231643932966 0.18525946 2.3282931138624e-11 hm5C_site_59356 DeepMRMD:0.18525946;iRNA_m5C:2.3282931138624e-11 59357 chr15 28901099 28901099 1 + T C rs200595789 28901097 + 28901077 28901117 41 GTCACCATGACTCGCATCACCCTGAAGGGCAAAATCACCGT GTCACCATGACTCGCATCACCCCGAAGGGCAAAATCACCGT < 41bp 0.498299317769552 0.76202608816965 0.14171427 0.16597414 prediction 0.5240521763393 Functional Gain - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28901097 chr15:28901099 . . 0 23 hm5C_associated_SNPs_106212 0 0 0 0 1 unknown 0.500231643932841 0.500231645570878 0 3.27607296846111e-09 hm5C_site_59357 DeepMRMD:0;iRNA_m5C:3.27607296846111e-09 59358 chr1 36788100 36788100 1 + G C rs550387297 36788101 - 36788081 36788121 41 CGACGACACGCTGCCGGGCCCCGAGCTGTCCGCAGAGCCGG CGACGACACGCTGCCGGGCCCGGAGCTGTCCGCAGAGCCGG < 41bp 0.58812446279699 0.850149552081731 0.05127099 0.40184167 prediction 0.524050178569482 Functional Gain - EVA1B ENSG00000142694 CDS Human protein_coding chr1:36788101 chr1:36788100 synonymous SNV . 0 22 hm5C_associated_SNPs_106213 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59358 DeepMRMD:0;iRNA_m5C:0 59359 chr8 6264139 6264139 1 + C G rs182865046 6264135 + 6264115 6264155 41 ATGCCCAGTGCCCGCGCGCGCCGCCAGGCTCGCAAGCACCG ATGCCCAGTGCCCGCGCGCGCCGCGAGGCTCGCAAGCACCG < 41bp 0.504420502045059 0.766444517713517 0.7333329 0.7980952 prediction 0.524048031336916 Functional Gain - MCPH1 ENSG00000246089 ncRNA_exonic Human antisense chr8:6264135 chr8:6264139 . . 0 25 hm5C_associated_SNPs_106214 0 0 0 0 1 Nucleus 0.500231643859116 0.500231643922229 0.1295246 1.26225030427918e-10 hm5C_site_59359 DeepMRMD:0.1295246;iRNA_m5C:1.26225030427918e-10 59360 chr17 9580068 9580068 1 + T C COAD 9580066 + 9580046 9580086 41 CCCTTCCTATTTTCCAGGTTCTTGAGTGTCACCTTGGTCTT CCCTTCCTATTTTCCAGGTTCTCGAGTGTCACCTTGGTCTT < 41bp 0.530563746463223 0.792587621151919 0.17219344 0.48200482 prediction 0.524047749377393 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9580066 chr17:9580068 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106215 0 0 0 0 1 cytosol 0.500231643921108 0.500231643921056 0 0 hm5C_site_59360 DeepMRMD:0;iRNA_m5C:0 59361 chr12 120639200 120639200 1 + T G rs377204353 120639197 + 120639177 120639217 41 GAATTCGGAGTCCCGGTTCCCTGTGCCACCTGGCGAGCTCA GAATTCGGAGTCCCGGTTCCCTGGGCCACCTGGCGAGCTCA < 41bp 0.639607304545851 0.90163078342614 0.5363595 0.9090446 prediction 0.524046957760577 Functional Gain - PXN-AS1 ENSG00000255857 ncRNA_exonic Human antisense chr12:120639197 chr12:120639200 . . 0 24 hm5C_associated_SNPs_106216 0 0 1 0 1 unknown 0.500231643921119 0.500231643921092 0.7453702 0 hm5C_site_59361 DeepMRMD:0.7453702;iRNA_m5C:0 59362 chr19 17581319 17581319 1 + C G rs527880623 17581318 + 17581298 17581338 41 GTGGGGCGGGGCTGGAGCGGCCCGCGGCCTCAGCTCTCTCT GTGGGGCGGGGCTGGAGCGGCGCGCGGCCTCAGCTCTCTCT < 41bp 0.553523508981394 0.815545714124415 0.4138887 0.71234345 prediction 0.524044410286042 Functional Gain - SLC27A1 ENSG00000130304 UTR5 Human protein_coding chr19:17581318 chr19:17581319 . . 0 22 hm5C_associated_SNPs_106217 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.4246869 0 hm5C_site_59362 DeepMRMD:0.4246869;iRNA_m5C:0 59363 chr5 140594237 140594237 1 + T A LUSC 140594233 + 140594213 140594253 41 TCAGCCCCAACTCCTATTTTCGGGTCCTCACCCGCAAACGC TCAGCCCCAACTCCTATTTTCGGGACCTCACCCGCAAACGC < 41bp 0.554769177278116 0.816786141452184 0.9266422 0.9376383 prediction 0.524033928348136 Functional Gain - PCDHB13 ENSG00000187372 CDS Human protein_coding chr5:140594233 chr5:140594237 nonsynonymous SNV 0.001 3 25 hm5C_associated_SNPs_106218 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0219922000000001 0 hm5C_site_59363 DeepMRMD:0.0219922000000001;iRNA_m5C:0 59364 chr11 82868552 82868552 1 + C G STAD 82868548 + 82868528 82868568 41 AGGACGCCTGTCGGGATTATCAGTCATCGCTCGAAGACCTG AGGACGCCTGTCGGGATTATCAGTGATCGCTCGAAGACCTG < 41bp 0.484424922214769 0.761992883456977 0.4232905 0.8716812 prediction 0.523985766913954 Functional Gain - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82868548 chr11:82868552 stopgain 0.998 0 25 hm5C_associated_SNPs_106219 0 0 1 0 0 Nucleus 0.500231643885378 0.500231643828749 0.7433624 0 hm5C_site_59364 DeepMRMD:0.7433624;iRNA_m5C:0 59365 chr2 20870237 20870237 1 + C A rs145064511 20870233 + 20870213 20870253 41 GTCCCCCGCAGACGAATCGGCAGCCGAAACAGGCCAGAGCT GTCCCCCGCAGACGAATCGGCAGCAGAAACAGGCCAGAGCT < 41bp 0.376600063627182 0.761992612163527 0.25464892 0.2296463 prediction 0.523985224327054 Functional Gain - GDF7 ENSG00000143869 CDS Human protein_coding chr2:20870233 chr2:20870237 synonymous SNV . 0 25 hm5C_associated_SNPs_106220 0 0 0 0 1 exosome 0.500231643923002 0.500231643921092 0 0 hm5C_site_59365 DeepMRMD:0;iRNA_m5C:0 59366 chr2 103095712 103095712 1 + T A UCEC 103095708 + 103095688 103095728 41 AGGAAGCGCGCGTGAACGAGCAGCTCTACATGATGATCTTT AGGAAGCGCGCGTGAACGAGCAGCACTACATGATGATCTTT < 41bp 0.441220073235508 0.761989742431594 0.17340845 0.3195323 prediction 0.523979484863187 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103095708 chr2:103095712 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_106221 0 0 0 0 1 exosome 0.500235364393778 0.500232230808818 0 0 hm5C_site_59366 DeepMRMD:0;iRNA_m5C:0 59367 chr17 59482042 59482042 1 + C A LUSC 59482038 + 59482018 59482058 41 CGAGCGCGATGGCGCGGAGTCAGACGCCTCGTCGTGCGACC CGAGCGCGATGGCGCGGAGTCAGAAGCCTCGTCGTGCGACC < 41bp 0.647031499766079 0.909013012674562 0.5517261 0.80069697 prediction 0.523963025816966 Functional Gain - TBX2 ENSG00000121068 CDS Human protein_coding chr17:59482038 chr17:59482042 nonsynonymous SNV 0.824 3 25 hm5C_associated_SNPs_106222 0 0 0 0 2 Cytosol 0.500246749683542 0.500231644807847 0.49794174 0 hm5C_site_59367 DeepMRMD:0.49794174;iRNA_m5C:0 59368 chr19 53958944 53958944 1 + T A CESC 53958940 + 53958920 53958960 41 TGTGGCAAGACCTTTAGTCACAAGTCATCCCTTACATGCCA TGTGGCAAGACCTTTAGTCACAAGACATCCCTTACATGCCA < 41bp 0.475005241872023 0.76197868943232 0.062998384 0.20708174 prediction 0.523957378864641 Functional Gain - ZNF761;ZNF765-ZNF761 ENSG00000160336 ncRNA_exonic Human protein_coding chr19:53958940 chr19:53958944 . 0.001 0 25 hm5C_associated_SNPs_106223 0 0 0 0 0 unknown 0.500231643920763 0.500231642996642 0 0 hm5C_site_59368 DeepMRMD:0;iRNA_m5C:0 59369 chr20 44506680 44506680 1 + C A UCEC 44506676 + 44506656 44506696 41 GTGCCGCCCTCGCAGGTTGGCATGCTGGACACCTTGCACCA GTGCCGCCCTCGCAGGTTGGCATGATGGACACCTTGCACCA < 41bp 0.359212892402629 0.761976699631212 0.5325684 0.54125637 prediction 0.523953399262425 Functional Gain - ZSWIM3 ENSG00000132801 CDS Human protein_coding chr20:44506676 chr20:44506680 nonsynonymous SNV 0.956 3 25 hm5C_associated_SNPs_106224 0 0 0 0 0 Cytosol 0.500231644059435 0.500231643921074 0.01737594 0 hm5C_site_59369 DeepMRMD:0.01737594;iRNA_m5C:0 59370 chr7 17378828 17378828 1 + T G COAD 17378826 + 17378806 17378846 41 CCTAGTTCCCTCCTGGCTGCCATGATGCAACAAGATGAGTC CCTAGTTCCCTCCTGGCTGCCAGGATGCAACAAGATGAGTC < 41bp 0.422963639320357 0.761965122339 0.021186769 0.16628456 prediction 0.523930244678 Functional Gain - AHR ENSG00000106546 CDS Human protein_coding chr7:17378826 chr7:17378828 nonsynonymous SNV 0.273 1 23 hm5C_associated_SNPs_106225 0 0 1 0 0 Endoplasmic reticulum 0.500231643909795 0.500231643921092 0 2.25943708187515e-11 hm5C_site_59370 DeepMRMD:0;iRNA_m5C:2.25943708187515e-11 59371 chr17 57047012 57047012 1 + C T CESC 57047011 + 57046991 57047031 41 TAGTCCGCCAGGAGATGTTCCCCCATGATCCTGCTGAGGCC TAGTCCGCCAGGAGATGTTCCTCCATGATCCTGCTGAGGCC < 41bp 0.52377803430619 0.785742297032229 0.5572388 0.97994065 prediction 0.523928525452077 Functional Gain - PPM1E ENSG00000175175 CDS Human protein_coding chr17:57047011 chr17:57047012 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_106226 0 0 1 0 1 Cytosol 0.500231606999437 0.500231644131957 0.8454037 7.4265038563226e-08 hm5C_site_59371 DeepMRMD:0.8454037;iRNA_m5C:7.4265038563226e-08 59372 chrX 55117804 55117804 1 + T A UCEC 55117800 + 55117780 55117820 41 CTTTTCAACAGGAACTGGCTCTGCTTAAGATAGAGGATGAG CTTTTCAACAGGAACTGGCTCTGCATAAGATAGAGGATGAG < 41bp 0.442334553114624 0.761963684379791 0.026348114 0.07741135 prediction 0.523927368759582 Functional Gain - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55117800 chrX:55117804 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_106227 0 0 0 0 2 Cytosol 0.500231643921091 0.500231643921092 0 2.88657986402541e-15 hm5C_site_59372 DeepMRMD:0;iRNA_m5C:2.88657986402541e-15 59373 chr6 146351097 146351097 1 + C G rs138794480 146351096 + 146351076 146351116 41 GCCTGACGGCCAGTCCCTCCCCCCAGGCAGGACTAAGAAGC GCCTGACGGCCAGTCCCTCCCGCCAGGCAGGACTAAGAAGC < 41bp 0.57679287043328 0.838754531345923 0.12988538 0.35857806 prediction 0.523923321825287 Functional Gain - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146351096 chr6:146351097 synonymous SNV . 0 22 hm5C_associated_SNPs_106228 0 0 0 0 0 exosome 0.500231643921092 0.500231643921481 0 7.7804429565731e-13 hm5C_site_59373 DeepMRMD:0;iRNA_m5C:7.7804429565731e-13 59374 chr9 35852855 35852855 1 + T C STAD 35852853 + 35852833 35852873 41 GCCTGTGACCAGCCAGGCATCGTGGTTTTCTGCATCATGGA GCCTGTGACCAGCCAGGCATCGCGGTTTTCTGCATCATGGA < 41bp 0.508500344053993 0.770454854192178 0.5263262 0.8453871 prediction 0.523909020276371 Functional Gain - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35852853 chr9:35852855 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_106229 0 0 0 0 1 cytosol 0.500231644585198 0.500231644109364 0.6381218 0 hm5C_site_59374 DeepMRMD:0.6381218;iRNA_m5C:0 59375 chr21 46600256 46600256 1 + C A rs114027650 46600252 + 46600232 46600272 41 GCTTCCCACACAGGTTTTAGCTGACGCTGTCTCACGCCTGG GCTTCCCACACAGGTTTTAGCTGAAGCTGTCTCACGCCTGG < 41bp 0.363327924351645 0.76193097344787 0.40080163 0.5305933 prediction 0.52386194689574 Functional Gain - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46600252 chr21:46600256 nonsynonymous SNV 0.140 3 25 hm5C_associated_SNPs_106230 0 0 1 0 1 Nucleus 0.500231660816584 0.500231643925033 0.0611866000000001 0 hm5C_site_59375 DeepMRMD:0.0611866000000001;iRNA_m5C:0 59376 chr4 147561806 147561806 1 + C A LUAD 147561802 + 147561782 147561822 41 CCATCGCTGCGCCAGAGAAGCGCTCGCTCGAAGCCTACTTT CCATCGCTGCGCCAGAGAAGCGCTAGCTCGAAGCCTACTTT < 41bp 0.350508965658631 0.761925659874113 0.1774146 0.26588923 prediction 0.523851319748226 Functional Gain - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147561802 chr4:147561806 stopgain 0.943 1 25 hm5C_associated_SNPs_106231 0 0 0 0 0 unknown 0.500230819038426 0.500231643921092 0 1.64976533345573e-06 hm5C_site_59376 DeepMRMD:0;iRNA_m5C:1.64976533345573e-06 59377 chr19 3746624 3746624 1 + C G rs34479626 3746620 + 3746600 3746640 41 CGCCAGTGGCTGGCGCCTGCCTCCCGCCGCAGCACCCGTCG CGCCAGTGGCTGGCGCCTGCCTCCGGCCGCAGCACCCGTCG < 41bp 0.542683095267991 0.804602086157829 0.20406413 0.7752806 prediction 0.523837981779676 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746620 chr19:3746624 nonsynonymous SNV 0.952 3 25 hm5C_associated_SNPs_106232 0 0 0 0 1 Ribosome 0.500231643925669 0.500231645826579 0.5505612 3.80181819359393e-09 hm5C_site_59377 DeepMRMD:0.5505612;iRNA_m5C:3.80181819359393e-09 59378 chr6 47763175 47763175 1 + C A LUSC 47763171 + 47763151 47763191 41 TCCTCTTCTTCTGCCTCTTGCTCCCAACGGCTGTGATCGTG TCCTCTTCTTCTGCCTCTTGCTCCAAACGGCTGTGATCGTG < 41bp 0.31972074720324 0.761916677046415 0.017442107 0.91510546 prediction 0.52383335409283 Functional Gain - OPN5 ENSG00000124818 CDS Human protein_coding chr6:47763171 chr6:47763175 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106233 0 0 0 0 0 exosome 0.500231649208532 0.500230919972846 0.83021092 0 hm5C_site_59378 DeepMRMD:0.83021092;iRNA_m5C:0 59379 chr11 67165577 67165577 1 + C G rs575670879 67165576 + 67165556 67165596 41 AGGGTTGCCCTGGCTGGGGCCCGGTGCCGAGACTCCCAAGC AGGGTTGCCCTGGCTGGGGCCGGGTGCCGAGACTCCCAAGC < 41bp 0.543771508866043 0.805680702986176 0.40061527 0.8843456 prediction 0.523818388240266 Functional Gain - RAD9A ENSG00000172613 UTR3 Human protein_coding chr11:67165576 chr11:67165577 . . 0 22 hm5C_associated_SNPs_106234 0 0 1 0 0 nucleus 0.500231643921092 0.500231643921092 0.7686912 0 hm5C_site_59379 DeepMRMD:0.7686912;iRNA_m5C:0 59380 chrX 149120634 149120634 1 + C G rs782189263 149120633 + 149120613 149120653 41 GCTTTCTGCAGCCTTGACTTCCGGGCTCAAGTGATCCTCCC GCTTTCTGCAGCCTTGACTTCGGGGCTCAAGTGATCCTCCC < 41bp 0.458894630659766 0.761905239654857 0.89629346 0.92055905 prediction 0.523810479309714 Functional Gain - LINC00894 ENSG00000235703 ncRNA_exonic Human antisense chrX:149120633 chrX:149120634 . . 0 22 hm5C_associated_SNPs_106235 0 0 0 0 0 unknown 0.500231643921091 0.500231643921092 0.0485311800000001 2.88657986402541e-15 hm5C_site_59380 DeepMRMD:0.0485311800000001;iRNA_m5C:2.88657986402541e-15 59381 chr14 102027984 102027984 1 + C A ESCA 102027980 + 102027960 102028000 41 GCCTCGTGCCTCGTGCTCTTCCCGCGCTTCCTCGGCACGGC GCCTCGTGCCTCGTGCTCTTCCCGAGCTTCCTCGGCACGGC < 41bp 0.6461265051191 0.908021198944555 0.20856676 0.5670891 prediction 0.523789387650911 Functional Gain - DIO3 ENSG00000197406 CDS Human protein_coding chr14:102027980 chr14:102027984 unknown 1.000 3 25 hm5C_associated_SNPs_106236 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921093 0.1341782 2.22044604925031e-16 hm5C_site_59381 DeepMRMD:0.1341782;iRNA_m5C:2.22044604925031e-16 59382 chr13 64313474 64313474 1 + C A rs532370988 64313470 + 64313450 64313490 41 GGCTGGCTCTCAATCCCCGCCTCGCGGGGGTGCCTCCCCCA GGCTGGCTCTCAATCCCCGCCTCGAGGGGGTGCCTCCCCCA < 41bp 0.634505552489606 0.896395256426705 0.06679052 0.24598485 prediction 0.523779407874199 Functional Gain - OR7E156P ENSG00000231061;ENSG00000215430 intergenic Human other chr13:64313470 chr13:64313474 . . 0 25 hm5C_associated_SNPs_106237 0 0 0 0 0 unknown 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_59382 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 59383 chr19 45567306 45567306 1 + C G LUAD 45567302 + 45567282 45567322 41 GTCCAGCTCAGAGTCCCGCTCCCGCTCCCGCTCCCCGACCC GTCCAGCTCAGAGTCCCGCTCCCGGTCCCGCTCCCCGACCC < 41bp 0.539438582863146 0.801326592360934 0.23758903 0.38636982 prediction 0.523776018995576 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45567302 chr19:45567306 synonymous SNV . 0 25 hm5C_associated_SNPs_106238 0 0 1 0 1 chromatin 0.500231643906348 0.500230789878405 0 0 hm5C_site_59383 DeepMRMD:0;iRNA_m5C:0 59384 chr1 26349661 26349661 1 + T A LUAD 26349657 + 26349637 26349677 41 CTCCCTGCCCCAGGACCTTCCAGCTGGGACAGGCTATGGTG CTCCCTGCCCCAGGACCTTCCAGCAGGGACAGGCTATGGTG < 41bp 0.586666714142988 0.848549991480873 0.39570776 0.50898045 prediction 0.523766554675769 Functional Gain - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26349657 chr1:26349661 nonsynonymous SNV 0.917 1 25 hm5C_associated_SNPs_106239 0 0 0 0 0 chromatin 0.500231643921093 0.500231643921096 0.0179609000000001 7.32747196252603e-15 hm5C_site_59384 DeepMRMD:0.0179609000000001;iRNA_m5C:7.32747196252603e-15 59385 chr4 69974002 69974002 1 + C A LUSC 69973998 + 69973978 69974018 41 CTTCAACACAATGTCGAGTACAGACTTGCTGAATGCATTGA CTTCAACACAATGTCGAGTACAGAATTGCTGAATGCATTGA < 41bp 0.363138046104284 0.761866644213989 0.041679382 0.06930226 prediction 0.523733288427978 Functional Gain - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69973998 chr4:69974002 nonsynonymous SNV 0.023 0 25 hm5C_associated_SNPs_106240 0 0 0 0 1 Endoplasmic reticulum 0.500231628717757 0.500235655117522 0 8.05279952964533e-06 hm5C_site_59385 DeepMRMD:0;iRNA_m5C:8.05279952964533e-06 59386 chr4 49005760 49005760 1 + T G LUAD 49005758 + 49005738 49005778 41 TCTCTCACAAACAGGAACAGCTTCAGCTGCGGGGCTCCTTT TCTCTCACAAACAGGAACAGCTGCAGCTGCGGGGCTCCTTT < 41bp 0.421715300752704 0.761860872851053 0.24278983 0.59845436 prediction 0.523721745702107 Functional Gain - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49005758 chr4:49005760 nonsynonymous SNV 0.017 0 23 hm5C_associated_SNPs_106241 0 0 0 0 1 unknown 0.500200453993545 0.500231572529987 0.19690872 6.2237072883331e-05 hm5C_site_59386 DeepMRMD:0.19690872;iRNA_m5C:6.2237072883331e-05 59387 chr5 158543594 158543594 1 + C A rs118091671 158543590 + 158543570 158543610 41 CTACTGAGTAGCTGGGATTACAGGCGCACGCCATCAGGCCG CTACTGAGTAGCTGGGATTACAGGAGCACGCCATCAGGCCG < 41bp 0.598514845350367 0.86036766077138 0.72740084 0.6635264 prediction 0.523705630842027 Functional Gain - LINC02202 ENSG00000245812 ncRNA_exonic Human lincRNA chr5:158543590 chr5:158543594 . . 0 25 hm5C_associated_SNPs_106242 0 0 0 0 0 unknown 0.500231757110181 0.500243947421188 0 2.43806220137088e-05 hm5C_site_59387 DeepMRMD:0;iRNA_m5C:2.43806220137088e-05 59388 chr11 64218191 64218191 1 + C G rs75947266 64218187 + 64218167 64218207 41 AGAGGAGTGGTGGGAGCAAGCCAGCAGGGACCAGCCGGGTC AGAGGAGTGGTGGGAGCAAGCCAGGAGGGACCAGCCGGGTC < 41bp 0.558518094946505 0.820359797115021 0.5023215 0.90124804 prediction 0.523683404337032 Functional Gain - LOC100996455 ENSG00000181908 UTR3 Human lincRNA chr11:64218187 chr11:64218191 . . 0 25 hm5C_associated_SNPs_106243 0 0 0 0 0 unknown 0.5002316441188 0.500231643921045 0.79785308 0 hm5C_site_59388 DeepMRMD:0.79785308;iRNA_m5C:0 59389 chr8 69104662 69104662 1 + T A LUSC 69104658 + 69104638 69104678 41 CACAGCTGCCTGTGCAAACACAGCTTGCAGTGCTTCTGGGG CACAGCTGCCTGTGCAAACACAGCATGCAGTGCTTCTGGGG < 41bp 0.430968376879329 0.761821926156805 0.29315633 0.19464171 prediction 0.523643852313609 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69104658 chr8:69104662 synonymous SNV . 0 25 hm5C_associated_SNPs_106244 0 0 0 0 2 Nucleus 0.500231713480099 0.500233678219463 0 3.92947872907001e-06 hm5C_site_59389 DeepMRMD:0;iRNA_m5C:3.92947872907001e-06 59390 chr8 65493532 65493532 1 + T A rs62519835 65493528 + 65493508 65493548 41 CGGCGTCCTCCTCCTCGTCGCCCCTGGGCTGCTTCGAGCCG CGGCGTCCTCCTCCTCGTCGCCCCAGGGCTGCTTCGAGCCG < 41bp 0.445340837541352 0.761817221599931 0.19616002 0.6314955 prediction 0.523634443199861 Functional Gain - BHLHE22 ENSG00000180828 CDS Human protein_coding chr8:65493528 chr8:65493532 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_106245 0 0 0 0 0 exosome 0.500231643921096 0.50023164392113 0.262991 6.75015598972095e-14 hm5C_site_59390 DeepMRMD:0.262991;iRNA_m5C:6.75015598972095e-14 59391 chr16 3714294 3714294 1 + A G UCEC 3714296 - 3714276 3714316 41 CACTCACCCTACTATGAGGCCATGAAGAAGAAAGACACAGA CACTCACCCTACTATGAGGCCACGAAGAAGAAAGACACAGA < 41bp 0.492327657870424 0.761816997080867 0.06343904 0.029789656 prediction 0.523633994161734 Functional Gain - TRAP1 ENSG00000126602 CDS Human protein_coding chr16:3714296 chr16:3714294 nonsynonymous SNV 0.983 2 23 hm5C_associated_SNPs_106246 0 0 1 0 1 Endoplasmic reticulum 0.50023164344835 0.500231639157413 0 0 hm5C_site_59391 DeepMRMD:0;iRNA_m5C:0 59392 chr9 79634859 79634859 1 + T A HNSC 79634855 + 79634835 79634875 41 CTGCACCCCGACTGCGGGGACATGTTCGAGAACGGCAGCTT CTGCACCCCGACTGCGGGGACATGATCGAGAACGGCAGCTT < 41bp 0.555760720205997 0.81757474346143 0.21694136 0.4028384 prediction 0.523628046510866 Functional Gain - FOXB2 ENSG00000204612 CDS Human protein_coding chr9:79634855 chr9:79634859 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_106247 0 0 0 0 0 unknown 0.500231654377689 0.500231898263777 0 4.87772175761236e-07 hm5C_site_59392 DeepMRMD:0;iRNA_m5C:4.87772175761236e-07 59393 chr1 2938265 2938265 1 + C G rs4576609 2938261 + 2938241 2938281 41 GGCTGCGGGCATGTTTAATCCGCACGCTTTAGACTCCCCGG GGCTGCGGGCATGTTTAATCCGCAGGCTTTAGACTCCCCGG < 41bp 0.545775091549558 0.807587310101428 0.097188205 0.40498936 prediction 0.523624437103741 Functional Gain - ACTRT2 ENSG00000169717 CDS Human protein_coding chr1:2938261 chr1:2938265 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_106248 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59393 DeepMRMD:0;iRNA_m5C:0 59394 chr7 120629731 120629731 1 + T C UCEC 120629729 + 120629709 120629749 41 CGATTTTGCCCCCGACCCTTCTTGGTGGGCTTAGTGGTGGC CGATTTTGCCCCCGACCCTTCTCGGTGGGCTTAGTGGTGGC < 41bp 0.482713511566845 0.761811101616977 0.20721152 0.2988532 prediction 0.523622203233953 Functional Gain - CPED1 ENSG00000106034 CDS Human protein_coding chr7:120629729 chr7:120629731 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_106249 0 0 0 0 0 chromatin 0.500231643919432 0.500231643921091 0 3.31823457599967e-12 hm5C_site_59394 DeepMRMD:0;iRNA_m5C:3.31823457599967e-12 59395 chr16 5136901 5136901 1 + C A rs4786596 5136897 + 5136877 5136917 41 AGGCTGGTCTTGAACTCGACCTCCCGTGATCTGCTCACCTC AGGCTGGTCTTGAACTCGACCTCCAGTGATCTGCTCACCTC < 41bp 0.416318080347159 0.761810847964933 0.107026756 0.90306103 prediction 0.523621695929866 Functional Gain - ALG1 ENSG00000118894 intronic Human protein_coding chr16:5136897 chr16:5136901 . . 0 25 hm5C_associated_SNPs_106250 0 0 0 0 0 Ribosome 0.500231877725628 0.5002316453205 0.80612206 0 hm5C_site_59395 DeepMRMD:0.80612206;iRNA_m5C:0 59396 chr9 124080957 124080957 1 + T C LIHC 124080955 + 124080935 124080975 41 CTCCCCAGGTCTCGGTCCTTCCTGAGGGCGGTGAGACCCCA CTCCCCAGGTCTCGGTCCTTCCCGAGGGCGGTGAGACCCCA < 41bp 0.488228077271966 0.761807585448199 0.21647856 0.38108432 prediction 0.523615170896398 Functional Gain - GSN ENSG00000148180 CDS Human protein_coding chr9:124080955 chr9:124080957 synonymous SNV . 0 23 hm5C_associated_SNPs_106251 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921088 0 0 hm5C_site_59396 DeepMRMD:0;iRNA_m5C:0 59397 chr16 31500027 31500027 1 + T C UCEC 31500025 + 31500005 31500045 41 TTCAACAGCAGCAGCACGCTCTTCACCATGGACATCTACAC TTCAACAGCAGCAGCACGCTCTCCACCATGGACATCTACAC < 41bp 0.489472008297177 0.761789293188811 0.15627569 0.9352482 prediction 0.523578586377621 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500025 chr16:31500027 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_106252 0 0 0 0 2 exosome 0.500231641335204 0.500231643952384 0.8704964 5.2343582801484e-09 hm5C_site_59397 DeepMRMD:0.8704964;iRNA_m5C:5.2343582801484e-09 59398 chr16 29819173 29819173 1 + C A rs150303738 29819169 + 29819149 29819189 41 GGTGTGCACGGGGCCTCGGCCGCCCGCTAGGCCGTGGGGAG GGTGTGCACGGGGCCTCGGCCGCCAGCTAGGCCGTGGGGAG < 41bp 0.642742277942268 0.904530762017167 0.18400615 0.27612883 prediction 0.523576968149797 Functional Gain - MAZ ENSG00000103495 CDS Human protein_coding chr16:29819169 chr16:29819173 nonsynonymous SNV 0.093 2 25 hm5C_associated_SNPs_106253 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643920483 0 0 hm5C_site_59398 DeepMRMD:0;iRNA_m5C:0 59399 chr20 61273845 61273845 1 + C A rs530768092 61273841 + 61273821 61273861 41 ATGAATGAAGCGGCGCGTGGCTGCCGGGGAGGCCAGAGCGT ATGAATGAAGCGGCGCGTGGCTGCAGGGGAGGCCAGAGCGT < 41bp 0.617791625110527 0.879577048056916 0.32068458 0.70635015 prediction 0.523570845892777 Functional Gain - SLCO4A1 ENSG00000101187 UTR5 Human protein_coding chr20:61273841 chr20:61273845 . . 0 25 hm5C_associated_SNPs_106254 0 0 1 0 1 Endoplasmic reticulum 0.500231643832166 0.500231834200589 0.4127003 3.80736847382934e-07 hm5C_site_59399 DeepMRMD:0.4127003;iRNA_m5C:3.80736847382934e-07 59400 chr1 179631398 179631398 1 + T G ESCA 179631396 + 179631376 179631416 41 TGGTGGAAAGAATCAGTATTCATCATGTAAAGAAATGCCAC TGGTGGAAAGAATCAGTATTCAGCATGTAAAGAAATGCCAC < 41bp 0.434111218754399 0.76177741571916 0.13268477 0.3260207 prediction 0.523554831438321 Functional Gain - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179631396 chr1:179631398 nonsynonymous SNV 0.748 1 23 hm5C_associated_SNPs_106255 0 0 0 0 1 cytosol 0.500231643971668 0.500231614351339 0 0 hm5C_site_59400 DeepMRMD:0;iRNA_m5C:0 59401 chr10 46998932 46998932 1 + C A UCEC 46998928 + 46998908 46998948 41 CCCTGGGCACCCCTGAGCCCCCGCCTTCAGCCCCTGTCCCA CCCTGGGCACCCCTGAGCCCCCGCATTCAGCCCCTGTCCCA < 41bp 0.374380768839215 0.761774173150923 0.050721258 0.022700131 prediction 0.523548346301845 Functional Gain - GPRIN2 ENSG00000204175 CDS Human protein_coding chr10:46998928 chr10:46998932 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_106256 0 0 0 0 1 exosome 0.500231642603001 0.500231643954981 0 2.70396061097244e-09 hm5C_site_59401 DeepMRMD:0;iRNA_m5C:2.70396061097244e-09 59402 chr14 76105721 76105721 1 + T C COAD 76105719 + 76105699 76105739 41 ACAACCCTGGTAGTCTATATCATGACACTGGTGGGCATGGT ACAACCCTGGTAGTCTATATCACGACACTGGTGGGCATGGT < 41bp 0.549951649294932 0.811721099142975 0.57564425 0.54961777 prediction 0.523538899696087 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76105719 chr14:76105721 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106257 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59402 DeepMRMD:0;iRNA_m5C:0 59403 chr18 21083604 21083604 1 + C G rs143953070 21083600 + 21083580 21083620 41 GCCATGGGCGAGGAGGACTACTATCTGGAGCTGTGCGAGCG GCCATGGGCGAGGAGGACTACTATGTGGAGCTGTGCGAGCG < 41bp 0.519214421860647 0.780982854747085 0.11117712 0.30320358 prediction 0.523536865772876 Functional Gain - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21083600 chr18:21083604 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_106258 0 0 1 0 1 Ribosome 0.50023164384307 0.500231643815588 0 0 hm5C_site_59403 DeepMRMD:0;iRNA_m5C:0 59404 chr17 53238380 53238380 1 + T A rs114578465 53238376 + 53238356 53238396 41 CAAGATGGAAGCCTAAAGCCCAAGTCGAGCAGCTCCCAGCA CAAGATGGAAGCCTAAAGCCCAAGACGAGCAGCTCCCAGCA < 41bp 0.530248525140192 0.792007632997675 0.36117554 0.40009904 prediction 0.523518215714967 Functional Gain - STXBP4 ENSG00000166263 UTR3 Human protein_coding chr17:53238376 chr17:53238380 . . 0 25 hm5C_associated_SNPs_106259 0 0 0 0 0 chromatin 0.500231643920545 0.500231643921082 0 1.07358566481253e-12 hm5C_site_59404 DeepMRMD:0;iRNA_m5C:1.07358566481253e-12 59405 chr2 71576384 71576384 1 + T G KIRP 71576382 + 71576362 71576402 41 AACAGAAGAAGGGGAAGCCTCATGGTAGCCGGTGGGATGAT AACAGAAGAAGGGGAAGCCTCAGGGTAGCCGGTGGGATGAT < 41bp 0.440215025186165 0.761755598273169 0.48027182 0.90089947 prediction 0.523511196546338 Functional Gain - ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71576382 chr2:71576384 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_106260 0 0 1 0 0 Nucleus 0.500231649390966 0.500231651762685 0.80179894 4.74343808676281e-09 hm5C_site_59405 DeepMRMD:0.80179894;iRNA_m5C:4.74343808676281e-09 59406 chr21 46021507 46021507 1 + C G LUAD 46021506 + 46021486 46021526 41 GCAGGCCCACCTGCTGCGTGCCCGTCCCCTCCTGCTGCGCC GCAGGCCCACCTGCTGCGTGCGCGTCCCCTCCTGCTGCGCC < 41bp 0.450088608763101 0.761739477123233 0.03054902 0.18066517 prediction 0.523478954246466 Functional Gain - KRTAP10-7 ENSG00000205441 CDS Human other chr21:46021506 chr21:46021507 nonsynonymous SNV 0.029 0 22 hm5C_associated_SNPs_106261 0 0 0 0 0 unknown 0.500231643290773 0.500231643921039 0 1.26053056881403e-09 hm5C_site_59406 DeepMRMD:0;iRNA_m5C:1.26053056881403e-09 59407 chr12 50352186 50352186 1 + T G rs1077521 50352183 + 50352163 50352203 41 AATCCTAGGCTCCTGGGAGGCCCTGGCAGAAGCCAGAACAC AATCCTAGGCTCCTGGGAGGCCCGGGCAGAAGCCAGAACAC < 41bp 0.452497071393539 0.761737085736568 0.4122777 0.4648733 prediction 0.523474171473135 Functional Gain - LOC101927318 ENSG00000257588 ncRNA_intronic Human antisense chr12:50352183 chr12:50352186 . . 0 24 hm5C_associated_SNPs_106262 1 0 0 0 0 unknown 0.50023164392109 0.500231643921092 0 4.44089209850063e-15 hm5C_site_59407 DeepMRMD:0;iRNA_m5C:4.44089209850063e-15 Nephrogenic diabetes insipidus Nephrogenic diabetes insipidus 59408 chr21 47536302 47536302 1 + C A COAD 47536298 + 47536278 47536318 41 CTCCTGCCCCCAGGGCGTTCCTGGCTTCAAAGGAGAGAAGG CTCCTGCCCCCAGGGCGTTCCTGGATTCAAAGGAGAGAAGG < 41bp 0.355200036718514 0.761734625201877 0.14981711 0.3886265 prediction 0.523469250403755 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47536298 chr21:47536302 synonymous SNV . 0 25 hm5C_associated_SNPs_106263 0 0 0 0 2 Cytosol 0.500231643921105 0.500231643920371 0 0 hm5C_site_59408 DeepMRMD:0;iRNA_m5C:0 59409 chr15 96877685 96877685 1 + C A CESC 96877681 + 96877661 96877701 41 GCCCCGCTCCTGGCCGCCGCCGGCCTGCATGCTTCGCCCAT GCCCCGCTCCTGGCCGCCGCCGGCATGCATGCTTCGCCCAT < 41bp 0.657909166064482 0.919629670794028 0.6161135 0.8915404 prediction 0.523441009459091 Functional Gain - NR2F2 ENSG00000185551 CDS Human protein_coding chr15:96877681 chr15:96877685 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_106264 0 0 1 0 0 Cytoplasm 0.500231643918822 0.500231643921085 0.5508538 4.52615722679184e-12 hm5C_site_59409 DeepMRMD:0.5508538;iRNA_m5C:4.52615722679184e-12 59410 chr5 145393551 145393551 1 + T C LUAD 145393549 + 145393529 145393569 41 GAGATCAGCACCCCAGTGCTCATCAGCTCCAGCAACCCCTC GAGATCAGCACCCCAGTGCTCACCAGCTCCAGCAACCCCTC < 41bp 0.520229815966486 0.781941245895783 0.25087667 0.20472178 prediction 0.523422859858594 Functional Gain - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145393549 chr5:145393551 nonsynonymous SNV 0.991 4 23 hm5C_associated_SNPs_106265 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59410 DeepMRMD:0;iRNA_m5C:0 59411 chr19 12921186 12921186 1 + T C rs7247284 12921184 + 12921164 12921204 41 TTCGTGGAGAAACTGCAGGACTTGGATACTGATTATGGCTC TTCGTGGAGAAACTGCAGGACTCGGATACTGATTATGGCTC < 41bp 0.508619513780624 0.770330516036291 0.24756059 0.27325714 prediction 0.523422004511335 Functional Gain - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12921184 chr19:12921186 nonsynonymous SNV 0.003 1 23 hm5C_associated_SNPs_106266 2 0 1 0 2 Ribosome 0.500231643924144 0.500231644074982 0 3.01676017500085e-10 hm5C_site_59411 DeepMRMD:0;iRNA_m5C:3.01676017500085e-10 not specified not specified 59412 chr17 8169597 8169597 1 + T C PAAD 8169595 + 8169575 8169615 41 GATGTCAGTGACGGAGGCCTCGTCACATGCCTGCTGGAGAT GATGTCAGTGACGGAGGCCTCGCCACATGCCTGCTGGAGAT < 41bp 0.537368450887634 0.79907620531287 0.33540922 0.92343384 prediction 0.523415508850474 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8169595 chr17:8169597 nonsynonymous SNV 0.616 0 23 hm5C_associated_SNPs_106267 0 0 1 0 2 Nucleus 0.500231592835134 0.500231642859417 0.84686768 1.00048567430733e-07 hm5C_site_59412 DeepMRMD:0.84686768;iRNA_m5C:1.00048567430733e-07 59413 chr3 12858739 12858739 1 + C A STAD 12858738 + 12858718 12858758 41 GCCCTGGTAGGGACCCGTCCCCCGTGTGTGGACTATGCCAA GCCCTGGTAGGGACCCGTCCCACGTGTGTGGACTATGCCAA < 41bp 0.49720797295447 0.761703388242548 0.085036725 0.35602564 prediction 0.523406776485097 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12858738 chr3:12858739 nonsynonymous SNV 0.393 0 22 hm5C_associated_SNPs_106268 0 0 0 0 0 chromatin 0.50023126830377 0.500226786260468 0 0 hm5C_site_59413 DeepMRMD:0;iRNA_m5C:0 59414 chr15 76633630 76633630 1 + C A ESCA 76633626 + 76633606 76633646 41 CCAGAGCGACCTGGACCAACCCGCCTTCCAACAGCTGGTGA CCAGAGCGACCTGGACCAACCCGCATTCCAACAGCTGGTGA < 41bp 0.35825388697984 0.761692395340983 0.19508556 0.31388894 prediction 0.523384790681966 Functional Gain - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76633626 chr15:76633630 synonymous SNV . 0 25 hm5C_associated_SNPs_106269 0 0 0 0 1 Cytosol 0.500231636631288 0.500231643921187 0 1.45797978134965e-08 hm5C_site_59414 DeepMRMD:0;iRNA_m5C:1.45797978134965e-08 59415 chr3 195453417 195453417 1 + C G rs73203948 195453413 + 195453393 195453433 41 CAGCCACGCCCACGACTGCCCGGACGAGGCCGACCACAGAC CAGCCACGCCCACGACTGCCCGGAGGAGGCCGACCACAGAC < 41bp 0.555899741187539 0.817583234834472 0.42379704 0.87177056 prediction 0.523366987293866 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195453413 chr3:195453417 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106270 0 0 0 0 0 Nucleus 0.500231643933239 0.500231644033689 0.74354112 2.0089974128723e-10 hm5C_site_59415 DeepMRMD:0.74354112;iRNA_m5C:2.0089974128723e-10 59416 chr10 96580365 96580365 1 + T A SKCM 96580361 + 96580341 96580381 41 GCACAACCCTGAGATATGCTCTCCTTCTCCTGCTGAAGCAC GCACAACCCTGAGATATGCTCTCCATCTCCTGCTGAAGCAC < 41bp 0.404900524511558 0.761663002486791 0.12691417 0.91849077 prediction 0.523326004973581 Functional Gain - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96580361 chr10:96580365 nonsynonymous SNV 0.007 3 25 hm5C_associated_SNPs_106271 0 0 0 0 1 exosome 0.500231643921009 0.500231643919295 0.83698154 0 hm5C_site_59416 DeepMRMD:0.83698154;iRNA_m5C:0 59417 chr6 27806787 27806787 1 + C G HNSC 27806786 + 27806766 27806806 41 GCACGCGGTGTCGGAGGGCACCAAGGCCGTCACCAAGTACA GCACGCGGTGTCGGAGGGCACGAAGGCCGTCACCAAGTACA < 41bp 0.557965593368234 0.819617280179042 0.6584977 0.8359293 prediction 0.523303373621614 Functional Gain - HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806786 chr6:27806787 synonymous SNV . 0 22 hm5C_associated_SNPs_106272 0 0 1 0 2 Ribosome 0.500231644736529 0.500231643921085 0.3548632 0 hm5C_site_59417 DeepMRMD:0.3548632;iRNA_m5C:0 59418 chr11 56019925 56019925 1 + T G rs17150243 56019923 + 56019903 56019943 41 TGTGTTGGTCATTGAGGATTCCTGGCTCCACAACCCCATGT TGTGTTGGTCATTGAGGATTCCGGGCTCCACAACCCCATGT < 41bp 0.601645995722889 0.863297272827523 0.2426075 0.41079172 prediction 0.523302554209267 Functional Gain - OR5T3 ENSG00000172489 CDS Human protein_coding chr11:56019923 chr11:56019925 nonsynonymous SNV 0.066 1 23 hm5C_associated_SNPs_106273 0 1 0 0 0 unknown 0.500231643947636 0.500231643928718 0 0 hm5C_site_59418 DeepMRMD:0;iRNA_m5C:0 59419 chr7 89874804 89874804 1 + C A rs17862129 89874800 + 89874780 89874820 41 ATCCGGCATCAGGAACAAGTCTAGCAGTTCCAGTCAAATCC ATCCGGCATCAGGAACAAGTCTAGAAGTTCCAGTCAAATCC < 41bp 0.649675582066999 0.911324150173281 0.2800237 0.2781483 prediction 0.523297136212564 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89874800 chr7:89874804 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_106274 0 0 1 0 1 cytosol 0.500231643921509 0.500231643921092 0 0 hm5C_site_59419 DeepMRMD:0;iRNA_m5C:0 59420 chr17 30800908 30800908 1 + C T GBM 30800907 + 30800887 30800927 41 GGTTATGACTCCATCGACAGCCCCAAGGCCATCACATCTCT GGTTATGACTCCATCGACAGCTCCAAGGCCATCACATCTCT < 41bp 0.48295772761667 0.761640845611325 0.018376023 0.5617387 prediction 0.523281691222649 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30800907 chr17:30800908 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_106275 0 0 1 0 2 Ribosome 0.500231643748192 0.500231645309964 0.1234774 3.12354520026759e-09 hm5C_site_59420 DeepMRMD:0.1234774;iRNA_m5C:3.12354520026759e-09 59421 chr1 160385911 160385911 1 + T G LUAD 160385908 + 160385888 160385928 41 TGGGGGCCGAGGGGACAAGTCGGTGACAATCCAGGCTCCCG TGGGGGCCGAGGGGACAAGTCGGGGACAATCCAGGCTCCCG < 41bp 0.653415311967487 0.915051516305245 0.88386387 0.93048203 prediction 0.523272408675515 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385908 chr1:160385911 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_106276 0 0 0 0 2 exosome 0.500231394825917 0.500231643980021 0.0932363199999999 4.98308209362364e-07 hm5C_site_59421 DeepMRMD:0.0932363199999999;iRNA_m5C:4.98308209362364e-07 59422 chr17 644841 644841 1 + C A rs3744735 644837 + 644817 644857 41 CTGGGAGTCAGGCGCAGCCTCACACCAGCTGCCTCCTCCAC CTGGGAGTCAGGCGCAGCCTCACAACAGCTGCCTCCTCCAC < 41bp 0.36044886591042 0.761621762625091 0.13697061 0.09806919 prediction 0.523243525250183 Functional Gain - FAM57A ENSG00000167695 UTR3 Human protein_coding chr17:644837 chr17:644841 . . 0 25 hm5C_associated_SNPs_106277 0 0 1 0 0 Ribosome 0.500231643903674 0.500231643922012 0 3.66759955738871e-11 hm5C_site_59422 DeepMRMD:0;iRNA_m5C:3.66759955738871e-11 59423 chr5 52344260 52344260 1 + T C COAD 52344258 + 52344238 52344278 41 ACAACGGGTGTGTGTTCTGACATCAGTCCTGATTTTCAGCT ACAACGGGTGTGTGTTCTGACACCAGTCCTGATTTTCAGCT < 41bp 0.523716655651537 0.78533124713516 0.24788976 0.20194292 prediction 0.523229182967245 Functional Gain - ITGA2 ENSG00000164171 CDS Human protein_coding chr5:52344258 chr5:52344260 nonsynonymous SNV 0.414 2 23 hm5C_associated_SNPs_106278 0 0 0 0 1 cytosol 0.500231673893495 0.500231771362697 0 1.94938403863532e-07 hm5C_site_59423 DeepMRMD:0;iRNA_m5C:1.94938403863532e-07 59424 chr19 9434955 9434955 1 + C G rs150129535 9434951 + 9434931 9434971 41 CGGTGGTGTCCCGGTGCAGCCACGCGAGAGTAGAAGGGTGG CGGTGGTGTCCCGGTGCAGCCACGGGAGAGTAGAAGGGTGG < 41bp 0.534540739411794 0.796138566857265 0.53520846 0.8616555 prediction 0.52319565489094 Functional Gain - ZNF559;ZNF559-ZNF177 ENSG00000188321 UTR5 Human protein_coding chr19:9434951 chr19:9434955 . . 0 25 hm5C_associated_SNPs_106279 0 0 0 0 0 unknown 0.500231647541156 0.500231643921054 0.65289408 0 hm5C_site_59424 DeepMRMD:0.65289408;iRNA_m5C:0 59425 chr17 43922672 43922672 1 + C G LUAD 43922668 + 43922648 43922688 41 GACCAACAGTGCTCAGACACCACCCTGGCACCCCAGGATCC GACCAACAGTGCTCAGACACCACCGTGGCACCCCAGGATCC < 41bp 0.553705596227819 0.815282775264944 0.043151975 0.15702647 prediction 0.523154358074251 Functional Gain - SPPL2C ENSG00000185294 CDS Human protein_coding chr17:43922668 chr17:43922672 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_106280 0 0 0 0 0 unknown 0.500316837055113 0.50023727117142 0 0 hm5C_site_59425 DeepMRMD:0;iRNA_m5C:0 59426 chr17 45286881 45286881 1 + T C UCEC 45286879 + 45286859 45286899 41 CACCAGCCCCTGCCCCAGCTCCTGAGGCTCCCAAGGAACCT CACCAGCCCCTGCCCCAGCTCCCGAGGCTCCCAAGGAACCT < 41bp 0.520697530193145 0.782272491579603 0.30251998 0.31640324 prediction 0.523149922772916 Functional Gain - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45286879 chr17:45286881 synonymous SNV . 0 23 hm5C_associated_SNPs_106281 0 0 1 0 1 Cytosol 0.500231643875141 0.500231643952576 0 1.54871226953901e-10 hm5C_site_59426 DeepMRMD:0;iRNA_m5C:1.54871226953901e-10 59427 chr20 56140980 56140980 1 + T G rs1042531 56140978 + 56140958 56140998 41 CATAATAATCATCACCACACCGTGAGCAGATCTGAAAGGCA CATAATAATCATCACCACACCGGGAGCAGATCTGAAAGGCA < 41bp 0.579617652776299 0.841185830384599 0.057575554 0.68743217 prediction 0.523136355216601 Functional Gain - PCK1 ENSG00000124253 UTR3 Human protein_coding chr20:56140978 chr20:56140980 . . 0 23 hm5C_associated_SNPs_106282 1 0 0 0 0 exosome 0.50023099130718 0.500231644226648 0.37486434 1.3058389367604e-06 hm5C_site_59427 DeepMRMD:0.37486434;iRNA_m5C:1.3058389367604e-06 Phosphoenolpyruvate carboxykinase (GTP) deficiency Phosphoenolpyruvate carboxykinase (GTP) deficiency 59428 chr4 187133384 187133384 1 + C A rs144839540 187133380 + 187133360 187133400 41 ATGGAACTCAGGGTGATGATCAGACGTGTCATTAGAACATG ATGGAACTCAGGGTGATGATCAGAAGTGTCATTAGAACATG < 41bp 0.421999028923163 0.761549205173283 0.9131375 0.8944566 prediction 0.523098410346565 Functional Gain - CYP4V2 ENSG00000164344 intronic Human protein_coding chr4:187133380 chr4:187133384 . . 0 25 hm5C_associated_SNPs_106283 0 0 1 1 0 Nucleus 0.500231643934417 0.500231643921002 0 0 hm5C_site_59428 DeepMRMD:0;iRNA_m5C:0 59429 chr11 56113695 56113695 1 + C A GBM 56113691 + 56113671 56113711 41 ATCTTGACCTACTTGGACTCCAAGCTACACACCCCCATGTA ATCTTGACCTACTTGGACTCCAAGATACACACCCCCATGTA < 41bp 0.64240470482429 0.903945137289646 0.0699209 0.14934516 prediction 0.523080864930713 Functional Gain - OR8K1 ENSG00000150261 CDS Human protein_coding chr11:56113691 chr11:56113695 nonsynonymous SNV 0.445 2 25 hm5C_associated_SNPs_106284 0 0 0 0 0 unknown 0.500231643921263 0.500231643921092 0 0 hm5C_site_59429 DeepMRMD:0;iRNA_m5C:0 59430 chr14 70171343 70171343 1 + T C UCEC 70171341 + 70171321 70171361 41 ATAAAGACACCCACACATCACTTGGGGTCCCCACGCTGTCT ATAAAGACACCCACACATCACTCGGGGTCCCCACGCTGTCT < 41bp 0.524079156746182 0.785603039361362 0.6437639 0.44523436 prediction 0.523047765230361 Functional Gain - SUSD6 ENSG00000100647 CDS Human protein_coding chr14:70171341 chr14:70171343 synonymous SNV . 0 23 hm5C_associated_SNPs_106285 0 0 1 0 1 Endoplasmic reticulum 0.500231641829415 0.500231624843634 0 0 hm5C_site_59430 DeepMRMD:0;iRNA_m5C:0 59431 chr6 7727734 7727734 1 + C G CESC 7727730 + 7727710 7727750 41 GCCCCCGGGCGCCGCGCACCCGCTCAACCGCAAGAGCCTTC GCCCCCGGGCGCCGCGCACCCGCTGAACCGCAAGAGCCTTC < 41bp 0.529195300078715 0.7907169482151 0.21317229 0.58993745 prediction 0.523043296272772 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7727730 chr6:7727734 synonymous SNV . 0 25 hm5C_associated_SNPs_106286 0 0 0 0 0 Ribosome 0.50023164392105 0.500231643921092 0.1798749 8.45989944764369e-14 hm5C_site_59431 DeepMRMD:0.1798749;iRNA_m5C:8.45989944764369e-14 59432 chr18 28986106 28986106 1 + T A LUAD 28986102 + 28986082 28986122 41 GATTTTATGAAATCCCAATCCTGGTGAAGGACAGCTATAAC GATTTTATGAAATCCCAATCCTGGAGAAGGACAGCTATAAC < 41bp 0.599582035780633 0.861103193887038 0.7464028 0.74197954 prediction 0.523042316212811 Functional Gain - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28986102 chr18:28986106 nonsynonymous SNV 0.957 3 25 hm5C_associated_SNPs_106287 0 0 0 0 1 exosome 0.500231710136422 0.500231697732536 0 0 hm5C_site_59432 DeepMRMD:0;iRNA_m5C:0 59433 chr16 81995714 81995714 1 + T G rs142941381 81995711 + 81995691 81995731 41 GATAGAGGAGGACCGGTCTTCGGTCAAGGGTATACGAGTAG GATAGAGGAGGACCGGTCTTCGGGCAAGGGTATACGAGTAG < 41bp 0.412918182539676 0.761519787621536 0.22686175 0.86385345 prediction 0.523039575243073 Functional Gain - PLCG2 ENSG00000260682 ncRNA_exonic Human misc_RNA chr16:81995711 chr16:81995714 . . 0 24 hm5C_associated_SNPs_106288 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0.7277069 0 hm5C_site_59433 DeepMRMD:0.7277069;iRNA_m5C:0 59434 chr8 39775455 39775455 1 + T A LUAD 39775451 + 39775431 39775471 41 TTGCTAAACATCTGCCTGATCTCATAGAGTCTGGCCAGCTT TTGCTAAACATCTGCCTGATCTCAAAGAGTCTGGCCAGCTT < 41bp 0.424880587868226 0.761504197105375 0.10573435 0.27589813 prediction 0.523008394210749 Functional Gain - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39775451 chr8:39775455 nonsynonymous SNV 0.063 4 25 hm5C_associated_SNPs_106289 0 0 0 0 2 Cytosol 0.500231643865958 0.500231665994286 0 4.42566545633127e-08 hm5C_site_59434 DeepMRMD:0;iRNA_m5C:4.42566545633127e-08 59435 chr5 153078626 153078626 1 + T A LUSC 153078622 + 153078602 153078642 41 GGAATGGCATGGTGGGAGAGCTGGTCTATGGAGTAAGTTCA GGAATGGCATGGTGGGAGAGCTGGACTATGGAGTAAGTTCA < 41bp 0.449057214477191 0.761498384769902 0.4848498 0.3687964 prediction 0.522996769539805 Functional Gain - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153078622 chr5:153078626 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106290 0 0 0 0 1 exosome 0.500231643921093 0.500231643921093 0 0 hm5C_site_59435 DeepMRMD:0;iRNA_m5C:0 59436 chr9 84609941 84609941 1 + C G rs73480308 84609940 + 84609920 84609960 41 AAAGCCATCCCCAATCCATGCCCCACAGGAAGCCTGTGCCA AAAGCCATCCCCAATCCATGCGCCACAGGAAGCCTGTGCCA < 41bp 0.557227142940956 0.818714667385067 0.021626472 0.17462331 prediction 0.522975048888222 Functional Gain - SPATA31D1 ENSG00000214929 CDS Human protein_coding chr9:84609940 chr9:84609941 nonsynonymous SNV 0.010 1 22 hm5C_associated_SNPs_106291 0 0 0 0 0 exosome 0.500231643921093 0.500388299607836 0 0.00031331137348789 hm5C_site_59436 DeepMRMD:0;iRNA_m5C:0.00031331137348789 59437 chr1 241959622 241959622 1 + T C UCEC 241959620 + 241959600 241959640 41 CGTAGAAGCCCAAAAGGACTCTTCAGATGGCATTACAGGAA CGTAGAAGCCCAAAAGGACTCTCCAGATGGCATTACAGGAA < 41bp 0.55992665614574 0.821413202877511 0.29645196 0.92460227 prediction 0.522973093463542 Functional Gain - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241959620 chr1:241959622 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_106292 0 0 0 0 1 cytosol 0.500231643921063 0.500231643921092 0.84920454 5.88418203051333e-14 hm5C_site_59437 DeepMRMD:0.84920454;iRNA_m5C:5.88418203051333e-14 59438 chr15 22873512 22873512 1 + T G rs548126431 22873510 + 22873490 22873530 41 AAATACAAAATGTATCCAGACATGGTGGTGTGTACCTGTAG AAATACAAAATGTATCCAGACAGGGTGGTGTGTACCTGTAG < 41bp 0.455597220902549 0.76147070426451 0.2709379 0.73118067 prediction 0.52294140852902 Functional Gain - TUBGCP5 ENSG00000153575 UTR3 Human other chr15:22873510 chr15:22873512 . . 0 23 hm5C_associated_SNPs_106293 0 0 1 2 0 chromatin 0.500231645483145 0.500231643724691 0.46236134 0 hm5C_site_59438 DeepMRMD:0.46236134;iRNA_m5C:0 59439 chr3 51977545 51977545 1 + C G rs536768535 51977544 + 51977524 51977564 41 ATGTCCACTCAGCAGCAACCCCGGGACCCAGGTGAGCTGCA ATGTCCACTCAGCAGCAACCCGGGGACCCAGGTGAGCTGCA < 41bp 0.56305020230448 0.824506862089254 0.47905183 0.93214786 prediction 0.522913319569549 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51977544 chr3:51977545 synonymous SNV . 0 22 hm5C_associated_SNPs_106294 0 0 0 0 1 nucleus 0.500231643921403 0.500231643922503 0.86429572 2.19935181178244e-12 hm5C_site_59439 DeepMRMD:0.86429572;iRNA_m5C:2.19935181178244e-12 59440 chr22 39883511 39883511 1 + T G SKCM 39883508 + 39883488 39883528 41 GTGTCCAGCTTTTTCTGGAACAATGCCCCGGTCACGCCCCA GTGTCCAGCTTTTTCTGGAACAAGGCCCCGGTCACGCCCCA < 41bp 0.36425299571622 0.761453264867255 0.1300154 0.4568825 prediction 0.52290652973451 Functional Gain - MGAT3 ENSG00000128268 CDS Human protein_coding chr22:39883508 chr22:39883511 nonsynonymous SNV 0.999 1 24 hm5C_associated_SNPs_106295 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_59440 DeepMRMD:0;iRNA_m5C:0 59441 chr5 135266048 135266048 1 + C G rs184869875 135266044 + 135266024 135266064 41 CGCGGACCCCCGTGCCTAGGCGCTCCTGTGCCTCCAGTGCG CGCGGACCCCCGTGCCTAGGCGCTGCTGTGCCTCCAGTGCG < 41bp 0.494762959804348 0.761452706149342 0.23222917 0.2823046 prediction 0.522905412298683 Functional Gain - FBXL21 ENSG00000145826 intronic Human protein_coding chr5:135266044 chr5:135266048 . . 0 25 hm5C_associated_SNPs_106296 0 0 1 0 0 unknown 0.500231643907449 0.500231643920215 0 2.55324650311195e-11 hm5C_site_59441 DeepMRMD:0;iRNA_m5C:2.55324650311195e-11 59442 chr1 247654603 247654603 1 + C A LUAD 247654599 + 247654579 247654619 41 CATGGATGTCAGGCTCCACACACCCATGTACTTCTTTCTTG CATGGATGTCAGGCTCCACACACCAATGTACTTCTTTCTTG < 41bp 0.412286283195451 0.761449989012426 0.025785029 0.11028227 prediction 0.522899978024852 Functional Gain - OR2W5 ENSG00000203664 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:247654599 chr1:247654603 . . 0 25 hm5C_associated_SNPs_106297 0 0 0 0 0 unknown 0.500232209746674 0.500673867147298 0 0.000883314801247037 hm5C_site_59442 DeepMRMD:0;iRNA_m5C:0.000883314801247037 59443 chr15 66782952 66782952 1 + A C SKCM 66782954 - 66782934 66782974 41 TCTTTGTTGCTTCCCAAACACTTAGACGCCAGCAGCATGGG TCTTTGTTGCTTCCCAAACACTGAGACGCCAGCAGCATGGG < 41bp 0.601779317866754 0.86321099807579 0.027083635 0.18183312 prediction 0.522863360418072 Functional Gain - MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66782954 chr15:66782952 stoploss 0.012 0 23 hm5C_associated_SNPs_106298 0 0 0 0 0 Ribosome 0.500231642929153 0.500231617047171 0 0 hm5C_site_59443 DeepMRMD:0;iRNA_m5C:0 59444 chrX 129305945 129305945 1 + C G rs190548497 129305941 + 129305921 129305961 41 CACACGCGCGCACACACACACGCACAGAGCTCGCTCGCCTC CACACGCGCGCACACACACACGCAGAGAGCTCGCTCGCCTC < 41bp 0.55376002508952 0.815185417600388 0.23437637 0.38952196 prediction 0.522850785021737 Functional Gain - RAB33A ENSG00000134594 UTR5 Human protein_coding chrX:129305941 chrX:129305945 . . 0 25 hm5C_associated_SNPs_106299 0 0 0 0 0 exosome 0.500231688700562 0.500231687997168 0 0 hm5C_site_59444 DeepMRMD:0;iRNA_m5C:0 59445 chr9 82187749 82187749 1 + C A LGG 82187745 + 82187725 82187765 41 AGATGTACCCGCAGACCAGACACCCAGTGAGTGCGGGCGGC AGATGTACCCGCAGACCAGACACCAAGTGAGTGCGGGCGGC < 41bp 0.386468609902594 0.761424533584168 0.04422003 0.10467154 prediction 0.522849067168335 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82187745 chr9:82187749 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_106300 0 0 0 0 1 Endoplasmic reticulum 0.500231644101724 0.500231643563245 0 0 hm5C_site_59445 DeepMRMD:0;iRNA_m5C:0 59446 chr17 27061954 27061954 1 + C T THCA 27061953 + 27061933 27061973 41 AACATCCTGCTTGACAAACACCGCATGGTCGTCAAGATCGG AACATCCTGCTTGACAAACACTGCATGGTCGTCAAGATCGG < 41bp 0.510794498525073 0.772196095633876 0.30674273 0.8231033 prediction 0.522803194217605 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27061953 chr17:27061954 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_106301 0 0 1 0 1 Nucleus 0.500231627116785 0.500231647960167 0.6462066 4.1686763374571e-08 hm5C_site_59446 DeepMRMD:0.6462066;iRNA_m5C:4.1686763374571e-08 59447 chr1 33745937 33745937 1 + C G rs138130115 33745936 + 33745916 33745956 41 GGCCACGGCCTGCTTGGCCCCCCCAAGTCCGAACGCGGCCG GGCCACGGCCTGCTTGGCCCCGCCAAGTCCGAACGCGGCCG < 41bp 0.583163749966071 0.844562199123691 0.028555483 0.19112796 prediction 0.522796898315239 Functional Gain - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33745936 chr1:33745937 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_106302 0 0 0 0 0 Nucleus 0.500231644157132 0.500231644684296 0 1.05432773622738e-09 hm5C_site_59447 DeepMRMD:0;iRNA_m5C:1.05432773622738e-09 59448 chr4 9784259 9784259 1 + C A UCEC 9784255 + 9784235 9784275 41 AAACAACCTGGCCAACTGGACGCCCTGGGAGGAGGACTTTT AAACAACCTGGCCAACTGGACGCCATGGGAGGAGGACTTTT < 41bp 0.355128387181026 0.761392249788743 0.04007411 0.3982631 prediction 0.522784499577486 Functional Gain - DRD5 ENSG00000169676 CDS Human protein_coding chr4:9784255 chr4:9784259 synonymous SNV . 0 25 hm5C_associated_SNPs_106303 0 0 0 0 0 unknown 0.500231643921962 0.500264828300513 0 6.63687571014204e-05 hm5C_site_59448 DeepMRMD:0;iRNA_m5C:6.63687571014204e-05 59449 chr9 136507441 136507441 1 + C G LGG 136507440 + 136507420 136507460 41 AGAGGGTGCAGCTCCTGAAGCCCAATATCCCCGAACCGGAG AGAGGGTGCAGCTCCTGAAGCGCAATATCCCCGAACCGGAG < 41bp 0.43725440578049 0.761391773642332 0.84018624 0.24114454 prediction 0.522783547284664 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136507440 chr9:136507441 nonsynonymous SNV 0.264 2 22 hm5C_associated_SNPs_106304 0 0 0 0 0 cytosol 0.500231643921092 0.500231643922024 0 1.86406445834564e-12 hm5C_site_59449 DeepMRMD:0;iRNA_m5C:1.86406445834564e-12 59450 chr17 48916922 48916922 1 + C A HNSC 48916918 + 48916898 48916938 41 TGGGACCAAGAGCTGCGTGGCGGCCCGCTACATGGACGTGA TGGGACCAAGAGCTGCGTGGCGGCACGCTACATGGACGTGA < 41bp 0.359117391493132 0.761391726783835 0.23426715 0.41309553 prediction 0.522783453567671 Functional Gain - WFIKKN2 ENSG00000173714 CDS Human protein_coding chr17:48916918 chr17:48916922 synonymous SNV . 0 25 hm5C_associated_SNPs_106305 0 0 0 0 1 exosome 0.500231643788806 0.500231646081086 0 4.58455939877922e-09 hm5C_site_59450 DeepMRMD:0;iRNA_m5C:4.58455939877922e-09 59451 chr12 69991488 69991488 1 + T C LIHC 69991486 + 69991466 69991506 41 ATGAAGCAGAAAGATCATTGCATGATGCTCTTTGTGTTCTT ATGAAGCAGAAAGATCATTGCACGATGCTCTTTGTGTTCTT < 41bp 0.550415359552314 0.811805950702354 0.17254794 0.13324371 prediction 0.522781182300079 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69991486 chr12:69991488 synonymous SNV . 0 23 hm5C_associated_SNPs_106306 0 0 1 0 2 Nucleus 0.500233600592786 0.500232078075582 0 0 hm5C_site_59451 DeepMRMD:0;iRNA_m5C:0 59452 chr9 37746718 37746718 1 + C A rs76149728 37746714 + 37746694 37746734 41 CCGTCAGTGCACGGCCCTCACGGCCGCCGTGTTCTGTTTGA CCGTCAGTGCACGGCCCTCACGGCAGCCGTGTTCTGTTTGA < 41bp 0.653401873177827 0.914786718464715 0.5276594 0.74620974 prediction 0.522769690573776 Functional Gain - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37746714 chr9:37746718 synonymous SNV . 0 25 hm5C_associated_SNPs_106307 0 0 0 0 0 exosome 0.500231643921093 0.500231643921306 0.43710068 4.2632564145606e-13 hm5C_site_59452 DeepMRMD:0.43710068;iRNA_m5C:4.2632564145606e-13 59453 chr1 19029612 19029612 1 + C G LUAD 19029608 + 19029588 19029628 41 ATGGGGGCAGCACTGTGCACCGGCCTCAGCCCCTGCCACCG ATGGGGGCAGCACTGTGCACCGGCGTCAGCCCCTGCCACCG < 41bp 0.459234298263761 0.761383926865256 0.22293228 0.8880458 prediction 0.522767853730512 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19029608 chr1:19029612 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_106308 0 0 0 0 1 exosome 0.500231633243933 0.500232003920314 0.7760916 7.41352763400371e-07 hm5C_site_59453 DeepMRMD:0.7760916;iRNA_m5C:7.41352763400371e-07 59454 chr12 120990388 120990388 1 + T G PRAD 120990385 + 120990365 120990405 41 CTGAACCACTTGTTGAATTTCACTTTTGAACCCCGTGGCCA CTGAACCACTTGTTGAATTTCACGTTTGAACCCCGTGGCCA < 41bp 0.372316986059628 0.76138071778909 0.08580193 0.08037579 prediction 0.522761435578179 Functional Gain - RNF10 ENSG00000022840 CDS Human protein_coding chr12:120990385 chr12:120990388 synonymous SNV . 0 24 hm5C_associated_SNPs_106309 0 0 1 0 1 Ribosome 0.500231644661134 0.500232193835197 0 1.09834812622722e-06 hm5C_site_59454 DeepMRMD:0;iRNA_m5C:1.09834812622722e-06 59455 chr19 58868926 58868926 1 + T A LUAD 58868922 + 58868902 58868942 41 CAGCCCCCTCAGAGAGGCCCCTCGTGGCAGTCTTCACATTG CAGCCCCCTCAGAGAGGCCCCTCGAGGCAGTCTTCACATTG < 41bp 0.56576209484655 0.827138387184745 0.052966952 0.40251815 prediction 0.52275258467639 Functional Gain - ZNF497 ENSG00000174586 CDS Human protein_coding chr19:58868922 chr19:58868926 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_106310 0 0 0 0 0 Nucleus 0.50023164393393 0.500231643921988 0 0 hm5C_site_59455 DeepMRMD:0;iRNA_m5C:0 59456 chr12 132281832 132281832 1 + C G HNSC 132281831 + 132281811 132281851 41 GCAGCGCCCCGGCCCGCGGCCCCCGCGGCCCACTCGGCGCA GCAGCGCCCCGGCCCGCGGCCGCCGCGGCCCACTCGGCGCA < 41bp 0.574933552025789 0.83630920780506 0.07613781 0.18051824 prediction 0.522751311558542 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132281831 chr12:132281832 nonsynonymous SNV 0.030 1 22 hm5C_associated_SNPs_106311 0 0 1 0 1 Nucleus 0.500231456187172 0.500231643921091 0 3.7546783770992e-07 hm5C_site_59456 DeepMRMD:0;iRNA_m5C:3.7546783770992e-07 59457 chr8 1497712 1497712 1 + T A LUSC 1497708 + 1497688 1497728 41 TTGGCGCTGACGCCCGACGCCAAGTACCTGAAGCGCAGCTC TTGGCGCTGACGCCCGACGCCAAGAACCTGAAGCGCAGCTC < 41bp 0.437691896003112 0.76136721533566 0.2017208 0.25086448 prediction 0.522734430671321 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1497708 chr8:1497712 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_106312 0 0 0 0 0 nucleolus 0.500231671816087 0.500231645048525 0 0 hm5C_site_59457 DeepMRMD:0;iRNA_m5C:0 59458 chr16 69599904 69599904 1 + C A rs569067217 69599900 + 69599880 69599920 41 AGCGGCGGCGGCGGTGGCGGCGACCGTCAGTTTTCGCTGAG AGCGGCGGCGGCGGTGGCGGCGACAGTCAGTTTTCGCTGAG < 41bp 0.416370919367122 0.761359292735733 0.47886696 0.63975865 prediction 0.522718585471466 Functional Gain - NFAT5 ENSG00000102908 UTR5 Human protein_coding chr16:69599900 chr16:69599904 . . 0 25 hm5C_associated_SNPs_106313 0 0 1 0 0 Nucleus 0.500231643325038 0.500231643825372 0.2795173 1.0006684370012e-09 hm5C_site_59458 DeepMRMD:0.2795173;iRNA_m5C:1.0006684370012e-09 59459 chr9 123614604 123614604 1 + C A rs13291203 123614600 + 123614580 123614620 41 GATCCAGAAAGTGGGTAGTGCAGGCTGTAGTGCTGATAACT GATCCAGAAAGTGGGTAGTGCAGGATGTAGTGCTGATAACT < 41bp 0.405218164010942 0.761349096372974 0.4689662 0.5289564 prediction 0.522698192745948 Functional Gain - PSMD5-AS1 ENSG00000226752 ncRNA_exonic Human transcribed_unitary_pseudogene chr9:123614600 chr9:123614604 . . 0 25 hm5C_associated_SNPs_106314 0 0 0 0 0 unknown 0.500231663787238 0.500231643922106 0.0579128 0 hm5C_site_59459 DeepMRMD:0.0579128;iRNA_m5C:0 59460 chr18 2913269 2913269 1 + T C LGG 2913267 + 2913247 2913287 41 GGGGGCCCGGGGGCATTCCACCTCATCGTGCACCTGAAGGC GGGGGCCCGGGGGCATTCCACCCCATCGTGCACCTGAAGGC < 41bp 0.516768610787016 0.778115754436234 0.119910836 0.22017491 prediction 0.522694287298436 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2913267 chr18:2913269 nonsynonymous SNV 0.442 4 23 hm5C_associated_SNPs_106315 0 0 1 0 0 Ribosome 0.500231643920869 0.500231643921092 0 4.47197834319013e-13 hm5C_site_59460 DeepMRMD:0;iRNA_m5C:4.47197834319013e-13 59461 chr9 131846992 131846992 1 + T G HNSC 131846989 + 131846969 131847009 41 TGCCTACCTGAGCCTCAGCCCTGTATTTGTCATCGTCGGTT TGCCTACCTGAGCCTCAGCCCTGGATTTGTCATCGTCGGTT < 41bp 0.648657617002447 0.910003065253097 0.0966557 0.17422137 prediction 0.5226908965013 Functional Gain - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131846989 chr9:131846992 nonsynonymous SNV 0.920 1 24 hm5C_associated_SNPs_106316 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59461 DeepMRMD:0;iRNA_m5C:0 59462 chr3 183858504 183858504 1 + C G BLCA 183858503 + 183858483 183858523 41 TCACCAACAGTGTCATTGGCCCCGGCTGCCACATTGGTGAG TCACCAACAGTGTCATTGGCCGCGGCTGCCACATTGGTGAG < 41bp 0.58463685237825 0.84597374124585 0.09667489 0.27455324 prediction 0.5226737777352 Functional Gain - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183858503 chr3:183858504 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_106317 0 0 1 0 1 Ribosome 0.500231643921359 0.500231643920234 0 0 hm5C_site_59462 DeepMRMD:0;iRNA_m5C:0 59463 chr8 21882646 21882646 1 + C A rs149954729 21882642 + 21882622 21882662 41 CGCGAGCGACCCCTCAGTACCTGCCGATGCCTGCTGGTCTC CGCGAGCGACCCCTCAGTACCTGCAGATGCCTGCTGGTCTC < 41bp 0.541205608671344 0.802539213077326 0.06436947 0.7732538 prediction 0.522667208811964 Functional Gain - NPM2 ENSG00000158806 UTR5 Human protein_coding chr8:21882642 chr8:21882646 . . 0 25 hm5C_associated_SNPs_106318 0 0 1 0 0 nucleus 0.500231162960025 0.500231643616225 0.5465076 9.61312399017089e-07 hm5C_site_59463 DeepMRMD:0.5465076;iRNA_m5C:9.61312399017089e-07 59464 chr4 77871016 77871016 1 + T G rs873090 77871014 + 77870994 77871034 41 CTAGCAGCAGCCGGAGTCGGCGTAAAGCACCCGGGCGCAGC CTAGCAGCAGCCGGAGTCGGCGGAAAGCACCCGGGCGCAGC < 41bp 0.598342464598945 0.859671307683284 0.85382795 0.90067476 prediction 0.522657686168676 Functional Gain - SEPT11 ENSG00000138758 UTR5 Human protein_coding chr4:77871014 chr4:77871016 . . 0 23 hm5C_associated_SNPs_106319 0 0 1 0 1 Ribosome 0.500231643952566 0.500231643921068 0.09369362 0 hm5C_site_59464 DeepMRMD:0.09369362;iRNA_m5C:0 59465 chr12 53677280 53677280 1 + T C STAD 53677278 + 53677258 53677298 41 AGTGAAGCCAAGGCCTTTTGCTTGGAGGCCCTAAAACTTAC AGTGAAGCCAAGGCCTTTTGCTCGGAGGCCCTAAAACTTAC < 41bp 0.516577994808866 0.777906447444216 0.045870155 0.038759083 prediction 0.522656905270699 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53677278 chr12:53677280 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106320 0 0 1 0 1 Nucleus 0.500231643919943 0.500231644024031 0 2.08174810722994e-10 hm5C_site_59465 DeepMRMD:0;iRNA_m5C:2.08174810722994e-10 59466 chr16 3705465 3705465 1 + C G rs77254040 3705464 + 3705444 3705484 41 AAGATCGCAGCCTTCAACATCCAGACATTTGGGGAGACCAA AAGATCGCAGCCTTCAACATCGAGACATTTGGGGAGACCAA < 41bp 0.44966940283 0.761327987626648 0.38552782 0.8881037 prediction 0.522655975253296 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3705464 chr16:3705465 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_106321 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921251 0.7762074 3.17523785042795e-13 hm5C_site_59466 DeepMRMD:0.7762074;iRNA_m5C:3.17523785042795e-13 59467 chr1 151811569 151811569 1 + A C rs187013576 151811572 - 151811552 151811592 41 GCATCACTCACCTCTGACTCCTCTGCGCTCCTCGCCCAGCC GCATCACTCACCTCTGACTCCTCGGCGCTCCTCGCCCAGCC < 41bp 0.543116806072786 0.804444542923937 0.43080604 0.9185535 prediction 0.522655473702301 Functional Gain - LOC100132111 ENSG00000225556 UTR5 Human protein_coding chr1:151811572 chr1:151811569 . . 0 24 hm5C_associated_SNPs_106322 0 0 0 0 0 unknown 0.500231643920805 0.500231638341982 0.837107 0 hm5C_site_59467 DeepMRMD:0.837107;iRNA_m5C:0 59468 chr4 139966122 139966122 1 + C G KIRC 139966121 + 139966101 139966141 41 GCCATGACATTGAAAACCAACCAGGTGGCCATTGCACAGAC GCCATGACATTGAAAACCAACGAGGTGGCCATTGCACAGAC < 41bp 0.58890100764555 0.850226890361032 0.24442065 0.9013693 prediction 0.522651765430965 Functional Gain - NOCT ENSG00000151014 CDS Human protein_coding chr4:139966121 chr4:139966122 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_106323 0 0 1 0 0 chromatin 0.500231640531689 0.500231562413721 0.8027386 0 hm5C_site_59468 DeepMRMD:0.8027386;iRNA_m5C:0 59469 chr21 46595935 46595935 1 + C G OV 46595931 + 46595911 46595951 41 TCCCAGACTGGGCCCGTGCACGCGCCTTTGTTTGTCATGTC TCCCAGACTGGGCCCGTGCACGCGGCTTTGTTTGTCATGTC < 41bp 0.479563546911405 0.761324627085133 0.17946881 0.46132812 prediction 0.522649254170265 Functional Gain - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46595931 chr21:46595935 nonsynonymous SNV 0.278 4 25 hm5C_associated_SNPs_106324 0 0 1 0 0 Nucleus 0.50023168890414 0.500231643921092 0 0 hm5C_site_59469 DeepMRMD:0;iRNA_m5C:0 59470 chr9 140136447 140136447 1 + T A LUAD 140136443 + 140136423 140136463 41 TGCGCTCGGGGCCCTTCGGGCAGATCTTCCGGCCGGACAAC TGCGCTCGGGGCCCTTCGGGCAGAACTTCCGGCCGGACAAC < 41bp 0.546843253378617 0.808154364850887 0.75268483 0.7000168 prediction 0.52262222294454 Functional Gain - TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140136443 chr9:140136447 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_106325 0 0 1 0 2 Cytosol 0.500232477554447 0.500231643921216 0 0 hm5C_site_59470 DeepMRMD:0;iRNA_m5C:0 59471 chr21 47660784 47660784 1 + C T SKCM 47660783 + 47660763 47660803 41 CAAACACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCA CAAACACTGCGCCAAGAGCTCTTCAGCAGAAGCTCCTCGCA < 41bp 0.495769624696701 0.761307545709262 0.118138015 0.13071012 prediction 0.522615091418524 Functional Gain - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660783 chr21:47660784 synonymous SNV . 0 22 hm5C_associated_SNPs_106326 0 0 1 4 1 Nucleus 0.500233415029616 0.500231656391248 0 0 hm5C_site_59471 DeepMRMD:0;iRNA_m5C:0 59472 chr14 21469496 21469496 1 + T G UCEC 21469493 + 21469473 21469513 41 GATGGGCAGTGTTCTCCATACTATTATTAGCTCTCATGTCC GATGGGCAGTGTTCTCCATACTAGTATTAGCTCTCATGTCC < 41bp 0.369143628467335 0.761297633384446 0.11887315 0.2974701 prediction 0.522595266768892 Functional Gain - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21469493 chr14:21469496 nonsynonymous SNV 0.917 0 24 hm5C_associated_SNPs_106327 0 0 0 0 0 exosome 0.5002314396767 0.500231644099328 0 4.08845256094637e-07 hm5C_site_59472 DeepMRMD:0;iRNA_m5C:4.08845256094637e-07 59473 chr8 195990 195990 1 + T C rs73521331 195988 + 195968 196008 41 AATCTTCTGTGCTTAAACGACATGAGAGAATTCACACTGGA AATCTTCTGTGCTTAAACGACACGAGAGAATTCACACTGGA < 41bp 0.528896224316577 0.790190943560756 0.20166743 0.10554123 prediction 0.522589438488357 Functional Gain - ZNF596 ENSG00000172748 CDS Human protein_coding chr8:195988 chr8:195990 synonymous SNV . 0 23 hm5C_associated_SNPs_106328 0 0 0 0 0 cytosol 0.500282800229069 0.500264567391337 0 0 hm5C_site_59473 DeepMRMD:0;iRNA_m5C:0 59474 chr2 30455541 30455541 1 + C G rs371038697 30455540 + 30455520 30455560 41 GGCGCAAGCCGCGGCGGGGTCCGGCCTGGCCCAAGAAGCGG GGCGCAAGCCGCGGCGGGGTCGGGCCTGGCCCAAGAAGCGG < 41bp 0.46559671493675 0.7612808170699 0.266892 0.8434913 prediction 0.522561634139801 Functional Gain - LBH ENSG00000213626 intronic Human protein_coding chr2:30455540 chr2:30455541 . . 0 22 hm5C_associated_SNPs_106329 0 0 0 0 0 Nucleus 0.500231643921038 0.500231643921094 0.6869826 1.10134124042816e-13 hm5C_site_59474 DeepMRMD:0.6869826;iRNA_m5C:1.10134124042816e-13 59475 chr6 83847436 83847436 1 + T G UCEC 83847434 + 83847414 83847454 41 CTGTGTCTGCAGAGGGAGGCCATGAGTGTGTGGCAAATGGA CTGTGTCTGCAGAGGGAGGCCAGGAGTGTGTGGCAAATGGA < 41bp 0.438432281711239 0.761271861036028 0.31119886 0.85557306 prediction 0.522543722072056 Functional Gain - DOPEY1 ENSG00000083097 CDS Human protein_coding chr6:83847434 chr6:83847436 nonsynonymous SNV 0.050 0 23 hm5C_associated_SNPs_106330 0 0 0 0 0 Cytosol 0.500231643921619 0.500231643934093 0.71114612 2.49467113633273e-11 hm5C_site_59475 DeepMRMD:0.71114612;iRNA_m5C:2.49467113633273e-11 59476 chr22 17517599 17517599 1 + C G rs372856608 17517598 + 17517578 17517618 41 GAGCCCGGTGACCCAGGCAGCCCTGGTGAGGCCGCAGGAGT GAGCCCGGTGACCCAGGCAGCGCTGGTGAGGCCGCAGGAGT < 41bp 0.477713284048271 0.761271394820883 0.6977108 0.70854723 prediction 0.522542789641765 Functional Gain - CECR7 ENSG00000237438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17517598 chr22:17517599 . . 0 22 hm5C_associated_SNPs_106331 0 0 0 0 0 unknown 0.500231643921098 0.500231643921182 0.02167286 1.66755498298699e-13 hm5C_site_59476 DeepMRMD:0.02167286;iRNA_m5C:1.66755498298699e-13 59477 chr7 150747925 150747925 1 + C G LUSC 150747924 + 150747904 150747944 41 TGAGCCAGAGCCCTCTGATCCCCTAGGCTCCCCCAGCCCCA TGAGCCAGAGCCCTCTGATCCGCTAGGCTCCCCCAGCCCCA < 41bp 0.445510589263852 0.761265102580575 0.33811504 0.34312242 prediction 0.52253020516115 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150747924 chr7:150747925 synonymous SNV . 0 22 hm5C_associated_SNPs_106332 0 0 1 0 1 exosome 0.500231643921086 0.500231643921092 0 1.33226762955019e-14 hm5C_site_59477 DeepMRMD:0;iRNA_m5C:1.33226762955019e-14 59478 chr1 171755160 171755160 1 + C G SARC 171755156 + 171755136 171755176 41 ATGAAAGCATGGACCACATCCAAGCTGAGCTGTCGGCTAGA ATGAAAGCATGGACCACATCCAAGGTGAGCTGTCGGCTAGA < 41bp 0.545581950971579 0.806846444616912 0.33457124 0.79015243 prediction 0.522528987290666 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171755156 chr1:171755160 nonsynonymous SNV 0.062 1 25 hm5C_associated_SNPs_106333 0 0 1 0 1 Ribosome 0.500231643921098 0.500231643921092 0.58030486 0 hm5C_site_59478 DeepMRMD:0.58030486;iRNA_m5C:0 59479 chr5 140537246 140537246 1 + C A LUAD 140537242 + 140537222 140537262 41 GCGTGCTGGTGTGCTGGACGCCAACGACAACTCGCCCTTCG GCGTGCTGGTGTGCTGGACGCCAAAGACAACTCGCCCTTCG < 41bp 0.388975063247036 0.761261780298427 0.019117683 0.0835273 prediction 0.522523560596853 Functional Gain - PCDHB17P ENSG00000255622 CDS Human transcribed_unprocessed_pseudogene chr5:140537242 chr5:140537246 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_106334 0 0 0 0 0 unknown 0.500234366347537 0.500231817546366 0 0 hm5C_site_59479 DeepMRMD:0;iRNA_m5C:0 59480 chr12 126137139 126137139 1 + C G LUSC 126137138 + 126137118 126137158 41 AGACAAAAGGGCCATCGTCTCCACAGCTGCTGCCCTGGATG AGACAAAAGGGCCATCGTCTCGACAGCTGCTGCCCTGGATG < 41bp 0.46012649237234 0.761253550072887 0.24957448 0.9036771 prediction 0.522507100145774 Functional Gain - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126137138 chr12:126137139 synonymous SNV . 0 22 hm5C_associated_SNPs_106335 0 0 0 0 1 exosome 0.500231109863619 0.500229529400492 0.8073542 0 hm5C_site_59480 DeepMRMD:0.8073542;iRNA_m5C:0 59481 chr10 11894124 11894124 1 + C G COAD 11894120 + 11894100 11894140 41 AGACGCATCTGACATGAACTCAGACACGTCCCCCAGCTGCA AGACGCATCTGACATGAACTCAGAGACGTCCCCCAGCTGCA < 41bp 0.471509906089062 0.761243706017311 0.5926588 0.8958478 prediction 0.522487412034621 Functional Gain - PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11894120 chr10:11894124 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_106336 0 0 1 0 1 chromatin 0.50023164381904 0.500231638592984 0.606378 0 hm5C_site_59481 DeepMRMD:0.606378;iRNA_m5C:0 59482 chrX 47035947 47035947 1 + C T SARC 47035946 + 47035926 47035966 41 GTGTCGATGCACTACAGTGACCCCAAGCCCAAGATCAATGA GTGTCGATGCACTACAGTGACTCCAAGCCCAAGATCAATGA < 41bp 0.529404592810056 0.790645433388734 0.15563595 0.9533839 prediction 0.522481681157356 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47035946 chrX:47035947 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_106337 0 0 1 0 2 Ribosome 0.500231643983536 0.500231685140898 0.9067678 8.2314723925947e-08 hm5C_site_59482 DeepMRMD:0.9067678;iRNA_m5C:8.2314723925947e-08 59483 chr22 38221351 38221351 1 + C A rs541627458 38221347 + 38221327 38221367 41 CTTGCGTCGCGTCCGCCCCGCGTCCTCGGGCCCACCCGGCT CTTGCGTCGCGTCCGCCCCGCGTCATCGGGCCCACCCGGCT < 41bp 0.408051647214718 0.761240540430259 0.18361294 0.08261797 prediction 0.522481080860518 Functional Gain - GALR3 ENSG00000128310 CDS Human protein_coding chr22:38221347 chr22:38221351 synonymous SNV . 0 25 hm5C_associated_SNPs_106338 0 0 0 0 0 nucleus 0.500231643921277 0.500231643921105 0 0 hm5C_site_59483 DeepMRMD:0;iRNA_m5C:0 59484 chr1 153963264 153963264 1 + C A rs71626798 153963260 + 153963240 153963280 41 TTTCCGGCGGTGACGACCTACGCACACGAGAACATGCCTGT TTTCCGGCGGTGACGACCTACGCAAACGAGAACATGCCTGT < 41bp 0.439877589582953 0.761210648800155 0.02899295 0.05455786 prediction 0.522421297600311 Functional Gain - RPS27 ENSG00000177954 UTR5 Human protein_coding chr1:153963260 chr1:153963264 . . 0 25 hm5C_associated_SNPs_106339 0 0 1 0 1 Cytosol 0.500231937307885 0.500231704103654 0 0 hm5C_site_59484 DeepMRMD:0;iRNA_m5C:0 59485 chr5 169129394 169129394 1 + T C COAD 169129392 + 169129372 169129412 41 ACACAGAGGAATGTGGAAGTCATCATGTGTGTGTGCGCGGA ACACAGAGGAATGTGGAAGTCACCATGTGTGTGTGCGCGGA < 41bp 0.51457451952151 0.775767653328084 0.10481945 0.13286579 prediction 0.522386267613148 Functional Gain - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169129392 chr5:169129394 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106340 0 0 1 0 2 Cytosol 0.500270008274862 0.500283234764192 0 2.64529786599965e-05 hm5C_site_59485 DeepMRMD:0;iRNA_m5C:2.64529786599965e-05 59486 chr20 39974584 39974584 1 + C G rs41277014 39974580 + 39974560 39974600 41 GGACGGCTCGTTCCGGTGCTCACCCTTCCACGTGCGTTTTG GGACGGCTCGTTCCGGTGCTCACCGTTCCACGTGCGTTTTG < 41bp 0.546697506081865 0.807879602454482 0.0330967 0.08266184 prediction 0.522364192745234 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39974580 chr20:39974584 synonymous SNV . 0 25 hm5C_associated_SNPs_106341 0 0 0 0 1 Nucleus 0.500231643921126 0.500231643921092 0 0 hm5C_site_59486 DeepMRMD:0;iRNA_m5C:0 59487 chr19 54385779 54385779 1 + T A HNSC 54385775 + 54385755 54385795 41 GGTCTGGGCCCCGGCGTAGGCGATTCAGAGGGGGGACCCCG GGTCTGGGCCCCGGCGTAGGCGATACAGAGGGGGGACCCCG < 41bp 0.574895186589545 0.83607265255574 0.42164743 0.44664496 prediction 0.522354931932389 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54385775 chr19:54385779 nonsynonymous SNV 0.982 0 25 hm5C_associated_SNPs_106342 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59487 DeepMRMD:0;iRNA_m5C:0 59488 chr1 152975898 152975898 1 + T G BRCA 152975896 + 152975876 152975916 41 AGCCAGGTGCCATCAAAGTTCCTGAGCAAGGATACACCAAA AGCCAGGTGCCATCAAAGTTCCGGAGCAAGGATACACCAAA < 41bp 0.611328462959504 0.872505307285074 0.06854954 0.3709627 prediction 0.522353688651139 Functional Gain - SPRR3 ENSG00000163209 CDS Human protein_coding chr1:152975896 chr1:152975898 synonymous SNV . 0 23 hm5C_associated_SNPs_106343 0 0 0 0 0 exosome 0.500231645606992 0.50023161172595 0 0 hm5C_site_59488 DeepMRMD:0;iRNA_m5C:0 59489 chr1 158435410 158435410 1 + T G LUAD 158435408 + 158435388 158435428 41 GTCGTCCTCGGCTTCTCATCCCTGGCCAGGCTGCAGCAGCT GTCGTCCTCGGCTTCTCATCCCGGGCCAGGCTGCAGCAGCT < 41bp 0.421281083689331 0.761166914947954 0.12499228 0.79241025 prediction 0.522333829895909 Functional Gain - OR10K1 ENSG00000173285 CDS Human protein_coding chr1:158435408 chr1:158435410 nonsynonymous SNV 0.825 2 23 hm5C_associated_SNPs_106344 0 0 0 0 0 unknown 0.500231644118201 0.500231358948432 0.5848205 0 hm5C_site_59489 DeepMRMD:0.5848205;iRNA_m5C:0 59490 chrX 38663490 38663490 1 + C A rs780738920 38663486 + 38663466 38663506 41 ACCAGGGGTGGCCCTGAGCGCCGGCGACACCTTTCCTGGAC ACCAGGGGTGGCCCTGAGCGCCGGAGACACCTTTCCTGGAC < 41bp 0.615096981465642 0.876255401036513 0.86169326 0.89952505 prediction 0.522316839141741 Functional Gain - MID1IP1 ENSG00000165175 UTR5 Human protein_coding chrX:38663486 chrX:38663490 . . 0 25 hm5C_associated_SNPs_106345 0 0 1 0 0 cytosol 0.500231643921038 0.500231643826881 0.0756635800000001 0 hm5C_site_59490 DeepMRMD:0.0756635800000001;iRNA_m5C:0 59491 chr12 65639551 65639551 1 + T C STAD 65639549 + 65639529 65639569 41 TTGCAGTAGACAAAAATTCACGTGAGGTAAAGTAACTTTTG TTGCAGTAGACAAAAATTCACGCGAGGTAAAGTAACTTTTG < 41bp 0.493771692023458 0.76115330028965 0.21708554 0.16007265 prediction 0.5223066005793 Functional Gain - LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65639549 chr12:65639551 synonymous SNV . 0 23 hm5C_associated_SNPs_106346 0 0 1 0 2 Endoplasmic reticulum 0.50023234792888 0.500240579139051 0 1.64624203411456e-05 hm5C_site_59491 DeepMRMD:0;iRNA_m5C:1.64624203411456e-05 59492 chr1 26153118 26153118 1 + C A LAML 26153114 + 26153094 26153134 41 TCCCTGGTCCAGGAGTGATACGCGCCCCCTGAGGCACACCT TCCCTGGTCCAGGAGTGATACGCGACCCCTGAGGCACACCT < 41bp 0.539627848145214 0.800771100177188 0.10318351 0.21576342 prediction 0.522286504063947 Functional Gain - MTFR1L ENSG00000117640 CDS Human protein_coding chr1:26153114 chr1:26153118 synonymous SNV . 0 25 hm5C_associated_SNPs_106347 0 0 1 0 1 Ribosome 0.500149868126639 0.500231634772839 0 0.000163533292399487 hm5C_site_59492 DeepMRMD:0;iRNA_m5C:0.000163533292399487 59493 chr16 67008285 67008285 1 + C G rs530069397 67008284 + 67008264 67008304 41 GCCCCACTCAGAGCAGCTGGCCGGCCCCAGGCAGTGAGGGC GCCCCACTCAGAGCAGCTGGCGGGCCCCAGGCAGTGAGGGC < 41bp 0.514909287818126 0.776029699415987 0.73303795 0.9217981 prediction 0.522240823195721 Functional Gain - CES3 ENSG00000172828 UTR3 Human protein_coding chr16:67008284 chr16:67008285 . . 0 22 hm5C_associated_SNPs_106348 0 0 0 0 0 nucleolus 0.500231644164688 0.500231643924338 0.3775203 0 hm5C_site_59493 DeepMRMD:0.3775203;iRNA_m5C:0 59494 chr5 108281869 108281869 1 + T C UCEC 108281867 + 108281847 108281887 41 TATCCAAATTTGAATCTATTCGTCATTCAATTGCTGGAATA TATCCAAATTTGAATCTATTCGCCATTCAATTGCTGGAATA < 41bp 0.535526986807159 0.796628718262433 0.010153055 0.040229708 prediction 0.522203462910547 Functional Gain - FER ENSG00000151422 CDS Human protein_coding chr5:108281867 chr5:108281869 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_106349 0 0 1 1 2 Nucleus 0.500231644118228 0.500231643948116 0 0 hm5C_site_59494 DeepMRMD:0;iRNA_m5C:0 59495 chrX 23685758 23685758 1 + C A LUSC 23685754 + 23685734 23685774 41 GCCACCGAAGGCTGCTTCTGCTGCCGCTACTGCTGTTCCTG GCCACCGAAGGCTGCTTCTGCTGCAGCTACTGCTGTTCCTG < 41bp 0.650928626126747 0.91202769061321 0.5237791 0.45665392 prediction 0.522198128972925 Functional Gain - PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23685754 chrX:23685758 nonsynonymous SNV 0.938 0 25 hm5C_associated_SNPs_106350 0 0 1 0 0 Endoplasmic reticulum 0.500231643921192 0.50023164644679 0 5.051196350081e-09 hm5C_site_59495 DeepMRMD:0;iRNA_m5C:5.051196350081e-09 59496 chr2 71753444 71753444 1 + T G UCEC 71753442 + 71753422 71753462 41 CTGCGAGGAGCCCACTTCTGCCTGAAGGTCTTCCGGGCCGA CTGCGAGGAGCCCACTTCTGCCGGAAGGTCTTCCGGGCCGA < 41bp 0.470389583693285 0.761091401298471 0.078279585 0.41234484 prediction 0.522182802596942 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71753442 chr2:71753444 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106351 0 0 0 0 1 Nucleus 0.500231647005539 0.500231821916954 0 3.49822830258972e-07 hm5C_site_59496 DeepMRMD:0;iRNA_m5C:3.49822830258972e-07 59497 chr15 40557097 40557097 1 + C T SKCM 40557096 + 40557076 40557116 41 AGGCAAGTTTGTGGGCCTCCCCCCACAATGGCAGAACATCC AGGCAAGTTTGTGGGCCTCCCTCCACAATGGCAGAACATCC < 41bp 0.523752014631704 0.784828518298143 0.11997488 0.9489467 prediction 0.522153007332878 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843;ENSG00000259288 CDS Human other chr15:40557096 chr15:40557097 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_106352 0 0 0 0 1 unknown 0.500231643921092 0.500231643920923 0.8978934 0 hm5C_site_59497 DeepMRMD:0.8978934;iRNA_m5C:0 59498 chr1 17597453 17597453 1 + C A LUAD 17597449 + 17597429 17597469 41 GGATCATGACGCCCAGCACTCTGCCACCCCTAGAGGTGTAT GGATCATGACGCCCAGCACTCTGCAACCCCTAGAGGTGTAT < 41bp 0.336760064911376 0.761053907060837 0.19772965 0.2207545 prediction 0.522107814121675 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17597449 chr1:17597453 nonsynonymous SNV 0.828 0 25 hm5C_associated_SNPs_106353 0 0 0 0 2 unknown 0.50023164392081 0.5001842779761 0 0 hm5C_site_59498 DeepMRMD:0;iRNA_m5C:0 59499 chr2 220371035 220371035 1 + C G rs1046474 220371034 + 220371014 220371054 41 GAGCACCGTGGGACGCTGGGCCCGCGTGGAGGGTACCCCCA GAGCACCGTGGGACGCTGGGCGCGCGTGGAGGGTACCCCCA < 41bp 0.580250622495409 0.841293247563735 0.07677752 0.37551966 prediction 0.522085250136652 Functional Gain - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220371034 chr2:220371035 synonymous SNV . 0 22 hm5C_associated_SNPs_106354 1 0 0 0 1 Ribosome 0.500231644161445 0.500231643921092 0 0 hm5C_site_59499 DeepMRMD:0;iRNA_m5C:0 not specified not specified 59500 chr1 221057646 221057646 1 + C G rs2738755 221057645 + 221057625 221057665 41 AGAAGCCATCAGGTGGAGCCCCGGCTGCGGATGGCGAGCAG AGAAGCCATCAGGTGGAGCCCGGGCTGCGGATGGCGAGCAG < 41bp 0.584142739452379 0.845180306761867 0.4330571 0.8928071 prediction 0.522075134618976 Functional Gain - HLX ENSG00000136630 CDS Human protein_coding chr1:221057645 chr1:221057646 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_106355 0 0 0 0 0 exosome 0.500231645067213 0.50023164392079 0.7856142 0 hm5C_site_59500 DeepMRMD:0.7856142;iRNA_m5C:0 59501 chr16 90238115 90238115 1 + C A rs150056384 90238111 + 90238091 90238131 41 CAGGCGCAGAACTTGATCTCCAGGCGGCCTTTGCAGGCCCG CAGGCGCAGAACTTGATCTCCAGGAGGCCTTTGCAGGCCCG < 41bp 0.621111261865212 0.882147774926268 0.932121 0.9108453 prediction 0.522073026122111 Functional Gain - FAM157C ENSG00000260528 ncRNA_intronic Human lincRNA chr16:90238111 chr16:90238115 . . 0 25 hm5C_associated_SNPs_106356 0 0 1 0 0 unknown 0.500231643921093 0.50023164392093 0 0 hm5C_site_59501 DeepMRMD:0;iRNA_m5C:0 59502 chr19 35739867 35739867 1 + C G HNSC 35739866 + 35739846 35739886 41 CCTCCTGGCCTTGGTGCGCGCCGCGCCCCCTAAGGTACTTT CCTCCTGGCCTTGGTGCGCGCGGCGCCCCCTAAGGTACTTT < 41bp 0.449683399377148 0.761015959332403 0.06155166 0.5695497 prediction 0.522031918664806 Functional Gain - LSR ENSG00000105699 CDS Human protein_coding chr19:35739866 chr19:35739867 nonsynonymous SNV 0.914 1 22 hm5C_associated_SNPs_106357 0 0 0 0 1 chromatin 0.500231643921093 0.500231643921092 0.1390994 0 hm5C_site_59502 DeepMRMD:0.1390994;iRNA_m5C:0 59503 chr2 26930105 26930105 1 + C G rs185530323 26930101 + 26930081 26930121 41 GAATGCAGGAGCCTCCCACCCGGACAGGGTCAGCTGCTCAC GAATGCAGGAGCCTCCCACCCGGAGAGGGTCAGCTGCTCAC < 41bp 0.546448716735457 0.807463587444259 0.3224339 0.8817743 prediction 0.522029741417603 Functional Gain - KCNK3 ENSG00000171303 intronic Human protein_coding chr2:26930101 chr2:26930105 . . 0 25 hm5C_associated_SNPs_106358 0 0 0 0 0 Cytosol 0.500231643967018 0.500231643940735 0.7635486 0 hm5C_site_59503 DeepMRMD:0.7635486;iRNA_m5C:0 59504 chr15 39544644 39544644 1 + T C HNSC 39544642 + 39544622 39544662 41 AACCAACTATATGGAGAAGTCATAAACAAAGAAACAGACAA AACCAACTATATGGAGAAGTCACAAACAAAGAAACAGACAA < 41bp 0.501288789367162 0.762300230081431 0.01127103 0.017397434 prediction 0.522022881428537 Functional Gain - C15orf54 ENSG00000175746 CDS Human lincRNA chr15:39544642 chr15:39544644 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_106359 0 0 0 0 0 unknown 0.500231643922335 0.500231644002763 0 1.60855329056631e-10 hm5C_site_59504 DeepMRMD:0;iRNA_m5C:1.60855329056631e-10 59505 chr20 57599126 57599126 1 + T C STAD 57599124 + 57599104 57599144 41 TATGACATCTGCTTCCGTACCCTGAAGCTGACGACACCCAC TATGACATCTGCTTCCGTACCCCGAAGCTGACGACACCCAC < 41bp 0.52026421362002 0.781261523761788 0.19484916 0.22365797 prediction 0.521994620283537 Functional Gain - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57599124 chr20:57599126 nonsynonymous SNV 0.919 4 23 hm5C_associated_SNPs_106360 0 0 0 0 0 Cytosol 0.50023164303329 0.500231643920671 0 1.77476233709228e-09 hm5C_site_59505 DeepMRMD:0;iRNA_m5C:1.77476233709228e-09 59506 chr8 31014958 31014958 1 + C G SARC 31014954 + 31014934 31014974 41 CTTATCCCAAGCGGTGAAAGCTGGCTGCCCCCTTGATTTGG CTTATCCCAAGCGGTGAAAGCTGGGTGCCCCCTTGATTTGG < 41bp 0.535079529286789 0.796075771098277 0.352589 0.86343086 prediction 0.521992483622975 Functional Gain - WRN ENSG00000165392 CDS Human protein_coding chr8:31014954 chr8:31014958 synonymous SNV . 0 25 hm5C_associated_SNPs_106361 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.72686172 0 hm5C_site_59506 DeepMRMD:0.72686172;iRNA_m5C:0 59507 chr2 36669816 36669816 1 + C G rs140450317 36669815 + 36669795 36669835 41 TGTTCAGCAGACCGCGTGTCCCCCGGACAGCTATGAAACTC TGTTCAGCAGACCGCGTGTCCGCCGGACAGCTATGAAACTC < 41bp 0.465691371565333 0.760987149334411 0.15250865 0.2523335 prediction 0.521974298668822 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36669815 chr2:36669816 synonymous SNV . 0 22 hm5C_associated_SNPs_106362 0 0 1 0 2 Nucleus 0.500231370313108 0.500232026965807 0 1.31330539909769e-06 hm5C_site_59507 DeepMRMD:0;iRNA_m5C:1.31330539909769e-06 59508 chr11 66191621 66191621 1 + T C LUSC 66191619 + 66191599 66191639 41 AAGCAGAACTAAGCAAGGATCTTGTGTGCACTCCACCTTAC AAGCAGAACTAAGCAAGGATCTCGTGTGCACTCCACCTTAC < 41bp 0.511381999226086 0.772357015347969 0.45897788 0.41808093 prediction 0.521950032243766 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66191619 chr11:66191621 synonymous SNV . 0 23 hm5C_associated_SNPs_106363 0 0 0 0 0 unknown 0.500251611861038 0.500231643921093 0 0 hm5C_site_59508 DeepMRMD:0;iRNA_m5C:0 59509 chr11 6261396 6261396 1 + C G OV 6261395 + 6261375 6261415 41 GGACCTGGCTTCCCTGATGCCCACAGATGTGGTCTACGTGC GGACCTGGCTTCCCTGATGCCGACAGATGTGGTCTACGTGC < 41bp 0.591814346326627 0.852787880662708 0.20773286 0.8625715 prediction 0.521947068672163 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261395 chr11:6261396 synonymous SNV . 0 22 hm5C_associated_SNPs_106364 0 0 0 0 0 exosome 0.50023168099302 0.500231641732298 0.725143 0 hm5C_site_59509 DeepMRMD:0.725143;iRNA_m5C:0 59510 chrX 140995432 140995432 1 + T A STAD 140995428 + 140995408 140995448 41 CTCCAGAGTCCTGTGAGTATCTGCTCCTCCTCCACTTCTTT CTCCAGAGTCCTGTGAGTATCTGCACCTCCTCCACTTCTTT < 41bp 0.438036192511883 0.760973229628864 0.13216153 0.3173979 prediction 0.521946459257729 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140995428 chrX:140995432 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_106365 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0 1.55431223447522e-15 hm5C_site_59510 DeepMRMD:0;iRNA_m5C:1.55431223447522e-15 59511 chr17 27077177 27077177 1 + T G rs182245314 27077174 + 27077154 27077194 41 ACTGAAGGCAAAGAAAGGACCAGTCAGAGAAGGGCCGCTGC ACTGAAGGCAAAGAAAGGACCAGGCAGAGAAGGGCCGCTGC < 41bp 0.648779963159411 0.909747901089822 0.066809386 0.33064795 prediction 0.521935875860821 Functional Gain - TRAF4 ENSG00000076604 UTR3 Human protein_coding chr17:27077174 chr17:27077177 . . 0 24 hm5C_associated_SNPs_106366 0 0 0 0 0 Ribosome 0.500231643570833 0.500231638564192 0 0 hm5C_site_59511 DeepMRMD:0;iRNA_m5C:0 59512 chr10 98744039 98744039 1 + T G SKCM 98744036 + 98744016 98744056 41 CAAGTGGAGCCAGAAGATGGCAGTGATGTCAGCCCCGGCCC CAAGTGGAGCCAGAAGATGGCAGGGATGTCAGCCCCGGCCC < 41bp 0.654660652388474 0.915624352727648 0.1836744 0.91127634 prediction 0.521927400678347 Functional Gain - LCOR ENSG00000155640 CDS Human other chr10:98744036 chr10:98744039 nonsynonymous SNV 0.784 0 24 hm5C_associated_SNPs_106367 0 0 1 0 0 Ribosome 0.500231643909587 0.500232823017584 0.82255268 2.35821599492425e-06 hm5C_site_59512 DeepMRMD:0.82255268;iRNA_m5C:2.35821599492425e-06 59513 chr16 88875283 88875283 1 + C A rs186930018 88875279 + 88875259 88875299 41 CCGGGTGTGGTGGTGGGCACCTGTCGTCCCAGCTACTAGGG CCGGGTGTGGTGGTGGGCACCTGTAGTCCCAGCTACTAGGG < 41bp 0.395221195862043 0.760955950297193 0.37740162 0.6218679 prediction 0.521911900594386 Functional Gain - CDT1 ENSG00000167513 UTR3 Human protein_coding chr16:88875279 chr16:88875283 . . 0 25 hm5C_associated_SNPs_106368 0 0 1 0 0 Cytosol 0.50023164391873 0.500231643921092 0.2437358 4.72466510359482e-12 hm5C_site_59513 DeepMRMD:0.2437358;iRNA_m5C:4.72466510359482e-12 59514 chr11 119044644 119044644 1 + T C PRAD 119044642 + 119044622 119044662 41 CCCCTGAAGGAGGTTCTGCCCCTGATGGCTGCTGCTGGGTC CCCCTGAAGGAGGTTCTGCCCCCGATGGCTGCTGCTGGGTC < 41bp 0.509782556918752 0.770738435824138 0.11438447 0.065926105 prediction 0.521911757810771 Functional Gain - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119044642 chr11:119044644 nonsynonymous SNV 0.012 2 23 hm5C_associated_SNPs_106369 0 0 0 0 0 exosome 0.500231644207549 0.50023164392124 0 0 hm5C_site_59514 DeepMRMD:0;iRNA_m5C:0 59515 chr20 61939936 61939936 1 + C A LUSC 61939932 + 61939912 61939952 41 TGCTGGGGCAGAACCTGCAGCCGGCGGCTGGCCTCCGTCCA TGCTGGGGCAGAACCTGCAGCCGGAGGCTGGCCTCCGTCCA < 41bp 0.374723608235651 0.760951744940676 0.88650864 0.89255965 prediction 0.521903489881351 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61939932 chr20:61939936 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_106370 0 0 0 0 1 exosome 0.50023164395113 0.500231643941803 0.0121020200000002 0 hm5C_site_59515 DeepMRMD:0.0121020200000002;iRNA_m5C:0 59516 chr19 1754615 1754615 1 + C G rs370471416 1754614 + 1754594 1754634 41 CCCCAGCGCGGGCGCAGCGGCCGAGGAGATCAACACCAAGG CCCCAGCGCGGGCGCAGCGGCGGAGGAGATCAACACCAAGG < 41bp 0.474189301130766 0.760927391592084 0.8003864 0.90846944 prediction 0.521854783184167 Functional Gain - ONECUT3 ENSG00000205922 CDS Human protein_coding chr19:1754614 chr19:1754615 synonymous SNV . 0 22 hm5C_associated_SNPs_106371 0 0 0 0 0 exosome 0.500231643889818 0.500231643920042 0.21616608 6.0447868932556e-11 hm5C_site_59516 DeepMRMD:0.21616608;iRNA_m5C:6.0447868932556e-11 59517 chr12 58016595 58016595 1 + C A UCEC 58016591 + 58016571 58016611 41 TTTCCCCAACCCCTCCTCCCCAACCTGGCTGAGCTGCCCAG TTTCCCCAACCCCTCCTCCCCAACATGGCTGAGCTGCCCAG < 41bp 0.335794544379871 0.760899314503206 0.23029855 0.17029464 prediction 0.521798629006411 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016591 chr12:58016595 nonsynonymous SNV 0.924 3 25 hm5C_associated_SNPs_106372 0 0 0 0 1 chromatin 0.500231643921092 0.500231643916737 0 0 hm5C_site_59517 DeepMRMD:0;iRNA_m5C:0 59518 chr14 74059005 74059005 1 + C G TGCT 74059004 + 74058984 74059024 41 GGTGCTGGACGGCCACGACCCCGAGCCTGGACGGCTGCTGT GGTGCTGGACGGCCACGACCCGGAGCCTGGACGGCTGCTGT < 41bp 0.576189524843369 0.837077826504817 0.84391654 0.89651215 prediction 0.521776603322897 Functional Gain - ACOT4 ENSG00000177465 CDS Human protein_coding chr14:74059004 chr14:74059005 synonymous SNV . 0 22 hm5C_associated_SNPs_106373 0 0 0 0 0 exosome 0.500231530658593 0.500231643921089 0.10519122 2.26524992985588e-07 hm5C_site_59518 DeepMRMD:0.10519122;iRNA_m5C:2.26524992985588e-07 59519 chr16 2881822 2881822 1 + T A LUAD 2881818 + 2881798 2881838 41 GTCCAGGTGAAACTTGGAGACTCCTGGGACGTGAAACTGGG GTCCAGGTGAAACTTGGAGACTCCAGGGACGTGAAACTGGG < 41bp 0.593426775508099 0.854314049002328 0.63428915 0.9635655 prediction 0.521774546988459 Functional Gain - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2881818 chr16:2881822 nonsynonymous SNV 0.002 3 25 hm5C_associated_SNPs_106374 0 0 1 0 0 exosome 0.500237749676718 0.50051520489383 0.6585527 0.000554910434222178 hm5C_site_59519 DeepMRMD:0.6585527;iRNA_m5C:0.000554910434222178 59520 chrX 152772005 152772005 1 + T G SKCM 152772002 + 152771982 152772022 41 CCTAGAGATGGGCGGGAACCCACTGGAGAACAGTGGCTTTG CCTAGAGATGGGCGGGAACCCACGGGAGAACAGTGGCTTTG < 41bp 0.649119718842054 0.909998400166143 0.46825704 0.8764752 prediction 0.521757362648179 Functional Gain - BGN ENSG00000182492 CDS Human protein_coding chrX:152772002 chrX:152772005 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_106375 0 0 1 0 2 Cytosol 0.500231643921093 0.500231643921081 0.7529504 0 hm5C_site_59520 DeepMRMD:0.7529504;iRNA_m5C:0 59521 chr4 1243329 1243329 1 + C G rs79746330 1243325 + 1243305 1243345 41 CTTCCCGCTCCGCCAGCTGCCGCCCTCCCGCGCTCGCTTCT CTTCCCGCTCCGCCAGCTGCCGCCGTCCCGCGCTCGCTTCT < 41bp 0.506855648444625 0.767730276225135 0.04477033 0.33954006 prediction 0.52174925556102 Functional Gain - CTBP1-AS2 ENSG00000196810 ncRNA_exonic Human antisense chr4:1243325 chr4:1243329 . . 0 25 hm5C_associated_SNPs_106376 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59521 DeepMRMD:0;iRNA_m5C:0 59522 chr3 147660724 147660724 1 + C G rs191387259 147660723 + 147660703 147660743 41 AGGCAGGACAATAACTTGAACCCGGGAGGCGAAGGTTGCAG AGGCAGGACAATAACTTGAACGCGGGAGGCGAAGGTTGCAG < 41bp 0.483097765901705 0.760870016021937 0.116812885 0.22337812 prediction 0.521740032043875 Functional Gain - LOC440982;LINC02032 ENSG00000239922 ncRNA_exonic Human lincRNA chr3:147660723 chr3:147660724 . . 0 22 hm5C_associated_SNPs_106377 0 0 0 0 0 unknown 0.500231643921093 0.500231644280714 0 7.19243331559483e-10 hm5C_site_59522 DeepMRMD:0;iRNA_m5C:7.19243331559483e-10 59523 chr11 114278311 114278311 1 + T C UCEC 114278309 + 114278289 114278329 41 CCAGTGGCGCCAAGGTACACCATCATCACAGCGTAAAGTCA CCAGTGGCGCCAAGGTACACCACCATCACAGCGTAAAGTCA < 41bp 0.50809625775259 0.768965461339873 0.007776439 0.051069856 prediction 0.521738407174565 Functional Gain - RBM7 ENSG00000076053 CDS Human protein_coding chr11:114278309 chr11:114278311 nonsynonymous SNV 0.824 0 23 hm5C_associated_SNPs_106378 0 0 0 0 0 Cytosol 0.500231790630371 0.500239107306932 0 1.46333531203524e-05 hm5C_site_59523 DeepMRMD:0;iRNA_m5C:1.46333531203524e-05 59524 chr3 14175262 14175262 1 + T C rs2340917 14175260 + 14175240 14175280 41 GCCATGGCAGTGGAGTCATTCATGGCAACAGCCCCCTTTGT GCCATGGCAGTGGAGTCATTCACGGCAACAGCCCCCTTTGT < 41bp 0.517027799568428 0.777888648142029 0.54293823 0.39245608 prediction 0.521721697147203 Functional Gain - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14175260 chr3:14175262 nonsynonymous SNV 0.297 0 23 hm5C_associated_SNPs_106379 3 0 1 0 2 Ribosome 0.500231643921089 0.500231643921092 0 5.99520433297585e-15 hm5C_site_59524 DeepMRMD:0;iRNA_m5C:5.99520433297585e-15 not specified not specified 59525 chr19 1924122 1924122 1 + C G BLCA 1924121 + 1924101 1924141 41 TTGCAGGTGCACAGGATCTACCGAGGGGCTGGCGGAAGCTT TTGCAGGTGCACAGGATCTACGGAGGGGCTGGCGGAAGCTT < 41bp 0.445853599631673 0.760856924208996 0.90901816 0.8406442 prediction 0.521713848417992 Functional Gain - SCAMP4 ENSG00000227500 CDS Human protein_coding chr19:1924121 chr19:1924122 nonsynonymous SNV 0.928 3 22 hm5C_associated_SNPs_106380 0 0 1 0 1 Ribosome 0.500231643828302 0.500231643921072 0 1.85538917563122e-10 hm5C_site_59525 DeepMRMD:0;iRNA_m5C:1.85538917563122e-10 59526 chr3 44673999 44673999 1 + T G GBM 44673997 + 44673977 44674017 41 TTCGAGGAGGTGTCAGTATGCTTCACTTCAGAGGAATGGGC TTCGAGGAGGTGTCAGTATGCTGCACTTCAGAGGAATGGGC < 41bp 0.607127244148433 0.867983039301795 0.3019045 0.22324276 prediction 0.521711590306726 Functional Gain - ZNF197;ZNF660-ZNF197 ENSG00000186448 CDS Human protein_coding chr3:44673997 chr3:44673999 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106381 0 0 0 0 2 unknown 0.500231644319597 0.500232329624437 0 1.37060967997371e-06 hm5C_site_59526 DeepMRMD:0;iRNA_m5C:1.37060967997371e-06 59527 chr1 110168300 110168300 1 + C A LUAD 110168296 + 110168276 110168316 41 CCCCCCAGGAGCTGTTCACCCGCTCACTGGCTGAGAGCGAG CCCCCCAGGAGCTGTTCACCCGCTAACTGGCTGAGAGCGAG < 41bp 0.350629148486147 0.760841739576231 0.129002 0.15312025 prediction 0.521683479152461 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168296 chr1:110168300 stopgain 0.978 0 25 hm5C_associated_SNPs_106382 0 0 1 0 1 Cytosol 0.500231652400865 0.500231643969838 0 0 hm5C_site_59527 DeepMRMD:0;iRNA_m5C:0 59528 chr2 113940295 113940295 1 + C G PCPG 113940294 + 113940274 113940314 41 CAGGACGGGCTGGAGCCTTGCCAGGAGCAAACCCGGGCCAC CAGGACGGGCTGGAGCCTTGCGAGGAGCAAACCCGGGCCAC < 41bp 0.570016643996916 0.830858374309166 0.89703226 0.912827 prediction 0.5216834606245 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113940294 chr2:113940295 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_106383 0 0 0 0 0 chromatin 0.500231643268885 0.500231643327224 0.0315894800000001 1.16677112416141e-10 hm5C_site_59528 DeepMRMD:0.0315894800000001;iRNA_m5C:1.16677112416141e-10 59529 chr4 134072049 134072049 1 + C G CESC 134072045 + 134072025 134072065 41 AATGACAATGTGCCCGCTTTCGACCAACCCGTCTACACTGT AATGACAATGTGCCCGCTTTCGACGAACCCGTCTACACTGT < 41bp 0.471049236519243 0.76083938600959 0.18393949 0.48283264 prediction 0.521678772019181 Functional Gain - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134072045 chr4:134072049 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_106384 0 0 0 0 0 cytosol 0.500231643918984 0.500231643921082 0 4.19619894387324e-12 hm5C_site_59529 DeepMRMD:0;iRNA_m5C:4.19619894387324e-12 59530 chr16 87636771 87636771 1 + T A SKCM 87636767 + 87636747 87636787 41 ACATGCATGTCCAGTGGGGGCAGGTTTAATTTTGACGACGG ACATGCATGTCCAGTGGGGGCAGGATTAATTTTGACGACGG < 41bp 0.557603245311689 0.818438461378697 0.7728616 0.8216342 prediction 0.521670432134015 Functional Gain - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87636767 chr16:87636771 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_106385 0 0 1 0 0 chromatin 0.500231643921094 0.500231643921093 0.0975451999999999 0 hm5C_site_59530 DeepMRMD:0.0975451999999999;iRNA_m5C:0 59531 chr6 126080842 126080842 1 + T G HNSC 126080840 + 126080820 126080860 41 GCAGTGGCCGCGGCCACAGCCATCAGCCCGCCCTTGTCAGT GCAGTGGCCGCGGCCACAGCCAGCAGCCCGCCCTTGTCAGT < 41bp 0.616391692728823 0.877210536040915 0.07376185 0.38094053 prediction 0.521637686624183 Functional Gain - HEY2 ENSG00000135547 CDS Human protein_coding chr6:126080840 chr6:126080842 nonsynonymous SNV 0.544 1 23 hm5C_associated_SNPs_106386 0 0 0 0 0 exosome 0.500230500234101 0.500231643718483 0 2.28696876392043e-06 hm5C_site_59531 DeepMRMD:0;iRNA_m5C:2.28696876392043e-06 59532 chr5 119816972 119816972 1 + T G rs142617593 119816969 + 119816949 119816989 41 TCTCCTGCCTCAGCCTGCCTCAGTGCGCCACTACGCCTGGG TCTCCTGCCTCAGCCTGCCTCAGGGCGCCACTACGCCTGGG < 41bp 0.64499690010848 0.9058139928381 0.75278336 0.9383046 prediction 0.521634185459242 Functional Gain - PRR16 ENSG00000184838 CDS Human protein_coding chr5:119816969 chr5:119816972 nonsynonymous SNV 0.003 2 24 hm5C_associated_SNPs_106387 0 0 0 0 1 Cytosol 0.500231643919782 0.500231643988848 0.37104248 1.38133504634652e-10 hm5C_site_59532 DeepMRMD:0.37104248;iRNA_m5C:1.38133504634652e-10 59533 chr11 82612842 82612842 1 + C G rs3763814 82612841 + 82612821 82612861 41 GTCACTGTGCGTCGCCTGGGCCCGTTCCTGGTCTTCTCCCC GTCACTGTGCGTCGCCTGGGCGCGTTCCTGGTCTTCTCCCC < 41bp 0.487475519929099 0.760813469516275 0.050621897 0.15050802 prediction 0.52162693903255 Functional Gain - DDIAS ENSG00000165490 UTR5 Human protein_coding chr11:82612841 chr11:82612842 . . 0 22 hm5C_associated_SNPs_106388 0 0 1 0 1 nucleus 0.500231644291835 0.500231611250154 0 0 hm5C_site_59533 DeepMRMD:0;iRNA_m5C:0 59534 chr15 85177517 85177517 1 + T A LUSC 85177513 + 85177493 85177533 41 AAGCCATGGCTGCTTGTTATCCGGTCAATGGAACGGGTTAT AAGCCATGGCTGCTTGTTATCCGGACAATGGAACGGGTTAT < 41bp 0.469198367542155 0.760810403076862 0.89398754 0.9092928 prediction 0.521620806153724 Functional Gain - SCAND2P ENSG00000176700;ENSG00000254779 ncRNA_exonic Human other chr15:85177513 chr15:85177517 . . 0 25 hm5C_associated_SNPs_106389 0 0 0 0 1 unknown 0.500231644050022 0.500231643838326 0.03061052 0 hm5C_site_59534 DeepMRMD:0.03061052;iRNA_m5C:0 59535 chr20 2297783 2297783 1 + C T SKCM 2297782 + 2297762 2297802 41 ACTTACACCGGTGGCCGGGACCCAAGGAGCTGGAACGGCAG ACTTACACCGGTGGCCGGGACTCAAGGAGCTGGAACGGCAG < 41bp 0.501626865165271 0.762436239341873 0.52994895 0.63201815 prediction 0.521618748353204 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2297782 chr20:2297783 nonsynonymous SNV 0.908 5 22 hm5C_associated_SNPs_106390 0 0 0 0 1 exosome 0.500231643921092 0.500231643921096 0.2041384 6.43929354282591e-15 hm5C_site_59535 DeepMRMD:0.2041384;iRNA_m5C:6.43929354282591e-15 59536 chr11 63960739 63960739 1 + C G BRCA 63960735 + 63960715 63960755 41 GAGGATGGCTGCAAGACTGTCGACCTAAAGCCTGACTGGGG GAGGATGGCTGCAAGACTGTCGACGTAAAGCCTGACTGGGG < 41bp 0.474431300495655 0.76080925083267 0.2904424 0.4567626 prediction 0.52161850166534 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63960735 chr11:63960739 nonsynonymous SNV 0.219 1 25 hm5C_associated_SNPs_106391 0 0 1 0 1 Ribosome 0.500231643921223 0.50023164392334 0 4.23416857131542e-12 hm5C_site_59536 DeepMRMD:0;iRNA_m5C:4.23416857131542e-12 59537 chr12 55759235 55759235 1 + C A LUAD 55759231 + 55759211 55759251 41 GGGTGACAGAATTTTACCTTCTGGCTGCCATGTCCTATGAC GGGTGACAGAATTTTACCTTCTGGATGCCATGTCCTATGAC < 41bp 0.648886659600796 0.909677785161981 0.45382598 0.6854026 prediction 0.52158225112237 Functional Gain - OR6C75 ENSG00000187857 CDS Human protein_coding chr12:55759231 chr12:55759235 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_106392 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.3708052 0 hm5C_site_59537 DeepMRMD:0.3708052;iRNA_m5C:0 59538 chr1 154296875 154296875 1 + T A OV 154296871 + 154296851 154296891 41 CCACCCTGAGGGCCCAGAGCCAGCTCAGGATCTGGTGTCTG CCACCCTGAGGGCCCAGAGCCAGCACAGGATCTGGTGTCTG < 41bp 0.454476436523482 0.760786113312341 0.30397448 0.29149768 prediction 0.521572226624683 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296871 chr1:154296875 synonymous SNV . 0 25 hm5C_associated_SNPs_106393 0 0 0 1 0 Ribosome 0.500231643920404 0.500231643921132 0 1.45705669751806e-12 hm5C_site_59538 DeepMRMD:0;iRNA_m5C:1.45705669751806e-12 59539 chr1 77093180 77093180 1 + C A rs1184626 77093176 + 77093156 77093196 41 CTCAGCACAGGGTGGTTTACCTTCCTTCTGGCCATGGACGC CTCAGCACAGGGTGGTTTACCTTCATTCTGGCCATGGACGC < 41bp 0.390260874189203 0.760785476897597 0.05356279 0.20683184 prediction 0.521570953795195 Functional Gain - ST6GALNAC3 ENSG00000184005 CDS Human protein_coding chr1:77093176 chr1:77093180 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_106394 0 0 0 0 1 nucleus 0.500231643921084 0.500231643920847 0 0 hm5C_site_59539 DeepMRMD:0;iRNA_m5C:0 59540 chr4 122725881 122725881 1 + T C UCEC 122725879 + 122725859 122725899 41 CCTTATGTCATTTCCGAAGACCTGATGTCTCTGTCCAAGGA CCTTATGTCATTTCCGAAGACCCGATGTCTCTGTCCAAGGA < 41bp 0.555513570931503 0.816296379629365 0.09862745 0.11739108 prediction 0.521565617395724 Functional Gain - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122725879 chr4:122725881 synonymous SNV . 0 23 hm5C_associated_SNPs_106395 0 0 1 0 1 Nucleus 0.500231235990737 0.500231643919202 0 8.15856930458381e-07 hm5C_site_59540 DeepMRMD:0;iRNA_m5C:8.15856930458381e-07 59541 chr9 4664516 4664516 1 + C G rs184013366 4664515 + 4664495 4664535 41 CTGTTCATCCATGGTGCCTCCCCAAATCATAAGACCAAAGA CTGTTCATCCATGGTGCCTCCGCAAATCATAAGACCAAAGA < 41bp 0.526149998167019 0.78693139986588 0.013239771 0.02694267 prediction 0.521562803397722 Functional Gain - PLPP6 ENSG00000205808 UTR3 Human protein_coding chr9:4664515 chr9:4664516 . . 0 22 hm5C_associated_SNPs_106396 0 0 1 1 0 Ribosome 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_59541 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 59542 chr1 1959083 1959083 1 + C A LUAD 1959079 + 1959059 1959099 41 CCCATGGACGAGCAGGAGTGCATGCTGGACCTGGAGAGCTG CCCATGGACGAGCAGGAGTGCATGATGGACCTGGAGAGCTG < 41bp 0.354622110456389 0.760770534970039 0.31864917 0.44407052 prediction 0.521541069940078 Functional Gain - GABRD ENSG00000187730 CDS Human protein_coding chr1:1959079 chr1:1959083 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_106397 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59542 DeepMRMD:0;iRNA_m5C:0 59543 chr21 15399772 15399772 1 + C G rs562526263 15399771 + 15399751 15399791 41 CGGCCTTTGTCTCACTTCAGCCAGAGAGCGGGGTTAGGGCT CGGCCTTTGTCTCACTTCAGCGAGAGAGCGGGGTTAGGGCT < 41bp 0.573209405387228 0.833978159659013 0.1844325 0.88630414 prediction 0.52153750854357 Functional Gain - ANKRD20A11P;LIPI ENSG00000224905 ncRNA_exonic Human antisense chr21:15399771 chr21:15399772 . . 0 22 hm5C_associated_SNPs_106398 0 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0.77260828 0 hm5C_site_59543 DeepMRMD:0.77260828;iRNA_m5C:0 59544 chr1 158226583 158226583 1 + C G rs138701701 158226582 + 158226562 158226602 41 TCTGTCCTTTGCAGTGAAGCCCGAGGCCTGGCTGTCCCATG TCTGTCCTTTGCAGTGAAGCCGGAGGCCTGGCTGTCCCATG < 41bp 0.579143075987185 0.839907064383438 0.57691795 0.89053184 prediction 0.521527976792506 Functional Gain - CD1A ENSG00000158477 CDS Human protein_coding chr1:158226582 chr1:158226583 synonymous SNV . 0 22 hm5C_associated_SNPs_106399 0 0 0 0 0 exosome 0.500231642383891 0.500229019805994 0.62722778 0 hm5C_site_59544 DeepMRMD:0.62722778;iRNA_m5C:0 59545 chr9 130425614 130425614 1 + C A BLCA 130425613 + 130425593 130425633 41 GTGCCACCCTGAAGGAGTACCCGGCTGTGCGGTATCGGGGG GTGCCACCCTGAAGGAGTACCAGGCTGTGCGGTATCGGGGG < 41bp 0.503814032975771 0.764572479283143 0.07580766 0.07355735 prediction 0.521516892614744 Functional Gain - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130425613 chr9:130425614 nonsynonymous SNV 0.954 5 22 hm5C_associated_SNPs_106400 0 0 0 0 1 Cytosol 0.500235892250884 0.500231644330242 0 0 hm5C_site_59545 DeepMRMD:0;iRNA_m5C:0 59546 chr11 48238421 48238421 1 + T A rs10769329 48238417 + 48238397 48238437 41 CACTGGCCTTTTCCAGGATCCAGCTGTGCAGAGTGTATGCT CACTGGCCTTTTCCAGGATCCAGCAGTGCAGAGTGTATGCT < 41bp 0.543263902096946 0.80401107824195 0.3554258 0.21813732 prediction 0.521494352290008 Functional Gain - OR4B1 ENSG00000175619 CDS Human protein_coding chr11:48238417 chr11:48238421 synonymous SNV . 0 25 hm5C_associated_SNPs_106401 0 0 0 0 0 unknown 0.500231643921092 0.500231643920881 0 0 hm5C_site_59546 DeepMRMD:0;iRNA_m5C:0 59547 chr1 3649657 3649657 1 + C A rs187293482 3649653 + 3649633 3649673 41 AGATCCACTGAGGGCCTCGCCTGGCTGCAGCCTGCGCCACC AGATCCACTGAGGGCCTCGCCTGGATGCAGCCTGCGCCACC < 41bp 0.623835574366371 0.884581901433941 0.78462917 0.9081341 prediction 0.521492654135141 Functional Gain - TP73 ENSG00000078900 UTR3 Human protein_coding chr1:3649653 chr1:3649657 . . 0 25 hm5C_associated_SNPs_106402 0 0 1 0 0 chromatin 0.500231672741454 0.500231643921132 0.24700986 0 hm5C_site_59547 DeepMRMD:0.24700986;iRNA_m5C:0 59548 chr12 56532009 56532009 1 + C A rs35075600 56532005 + 56531985 56532025 41 GTCCCATCTGGCCGCCTGCACTTGCGCCTGGAGCGTCTCAC GTCCCATCTGGCCGCCTGCACTTGAGCCTGGAGCGTCTCAC < 41bp 0.342502443285442 0.760740652010985 0.28947395 0.37590447 prediction 0.521481304021969 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532005 chr12:56532009 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106403 0 0 1 0 2 Endoplasmic reticulum 0.500231639679223 0.500231643902995 0 8.44754444173645e-09 hm5C_site_59548 DeepMRMD:0;iRNA_m5C:8.44754444173645e-09 59549 chr4 41984468 41984468 1 + C G BLCA 41984464 + 41984444 41984484 41 GCGTGGCGACGGGACACCAGCAGTCATTTGATACCAGCAGT GCGTGGCGACGGGACACCAGCAGTGATTTGATACCAGCAGT < 41bp 0.481021632836141 0.760740487514866 0.19832474 0.34096542 prediction 0.521480975029732 Functional Gain - DCAF4L1 ENSG00000182308 CDS Human protein_coding chr4:41984464 chr4:41984468 stopgain 0.511 0 25 hm5C_associated_SNPs_106404 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921106 0 2.77555756156289e-14 hm5C_site_59549 DeepMRMD:0;iRNA_m5C:2.77555756156289e-14 59550 chr19 55086249 55086249 1 + T C rs45523736 55086247 + 55086227 55086267 41 CTGCCCAGCCCTGTGGTGACCTTAGGAGGGAACGTGACCCT CTGCCCAGCCCTGTGGTGACCTCAGGAGGGAACGTGACCCT < 41bp 0.504991335357256 0.765728975201084 0.80451524 0.6954725 prediction 0.521475279687656 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086247 chr19:55086249 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_106405 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921082 0 0 hm5C_site_59550 DeepMRMD:0;iRNA_m5C:0 59551 chr10 104816663 104816663 1 + C T SKCM 104816662 + 104816642 104816682 41 ATGAGAAGAACAAGAAAGCCCCCGAATACTACCTCTACCAG ATGAGAAGAACAAGAAAGCCCTCGAATACTACCTCTACCAG < 41bp 0.497408274793124 0.760730304224792 0.27179348 0.8464383 prediction 0.521460608449584 Functional Gain - CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104816662 chr10:104816663 nonsynonymous SNV 0.917 2 22 hm5C_associated_SNPs_106406 0 0 0 0 1 Ribosome 0.500231643921093 0.500231643829206 0.6928766 0 hm5C_site_59551 DeepMRMD:0.6928766;iRNA_m5C:0 59552 chr6 155153514 155153514 1 + C A COAD 155153510 + 155153490 155153530 41 TTCGTCCGGGACTAATACCACAGGCACCTGGGCCAAGATTC TTCGTCCGGGACTAATACCACAGGAACCTGGGCCAAGATTC < 41bp 0.356521894070068 0.76072759222855 0.58023417 0.63394153 prediction 0.5214551844571 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155153510 chr6:155153514 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_106407 0 0 1 0 0 Nucleus 0.500231584397354 0.50023158481369 0.10741472 8.32672153450176e-10 hm5C_site_59552 DeepMRMD:0.10741472;iRNA_m5C:8.32672153450176e-10 59553 chrX 114424438 114424438 1 + C G rs62601527 114424437 + 114424417 114424457 41 ACCTGTGGCCCTACAGGGCCCCGATGCCCAGGAAGCGCGGG ACCTGTGGCCCTACAGGGCCCGGATGCCCAGGAAGCGCGGG < 41bp 0.463919696207268 0.760721115482983 0.26911157 0.9088901 prediction 0.521442230965967 Functional Gain - RBMXL3 ENSG00000175718 CDS Human protein_coding chrX:114424437 chrX:114424438 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_106408 0 0 0 0 0 exosome 0.500231643921092 0.500231643921085 0.8177802 0 hm5C_site_59553 DeepMRMD:0.8177802;iRNA_m5C:0 59554 chr16 27459874 27459874 1 + T C KIRP 27459872 + 27459852 27459892 41 CAGAAATGGGTGGGTGCACCCTTCACTGGCTCCAGCCTGGA CAGAAATGGGTGGGTGCACCCTCCACTGGCTCCAGCCTGGA < 41bp 0.544364426839911 0.805082615480888 0.13047907 0.9496332 prediction 0.521436377281955 Functional Gain - IL21R ENSG00000103522 CDS Human protein_coding chr16:27459872 chr16:27459874 nonsynonymous SNV 0.053 1 23 hm5C_associated_SNPs_106409 0 0 0 0 1 nucleus 0.500231643921092 0.500231643921114 0.8992664 4.21884749357559e-14 hm5C_site_59554 DeepMRMD:0.8992664;iRNA_m5C:4.21884749357559e-14 59555 chr5 140589987 140589987 1 + T G OV 140589985 + 140589965 140590005 41 CCGCACCTGCCCCTCGCCTCCCTGGTCTCCATCAACGCGGA CCGCACCTGCCCCTCGCCTCCCGGGTCTCCATCAACGCGGA < 41bp 0.412402477787202 0.760709006524877 0.010550916 0.1805681 prediction 0.521418013049754 Functional Gain - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140589985 chr5:140589987 nonsynonymous SNV 0.000 3 23 hm5C_associated_SNPs_106410 0 0 1 0 0 exosome 0.500231643853687 0.500231657839746 0 2.79721170670655e-08 hm5C_site_59555 DeepMRMD:0;iRNA_m5C:2.79721170670655e-08 59556 chr12 654081 654081 1 + C T SKCM 654080 + 654060 654100 41 CTGAGGAAGCTTGCTGTGTCCCCCAAATGGACCAACTATGG CTGAGGAAGCTTGCTGTGTCCTCCAAATGGACCAACTATGG < 41bp 0.49831573255145 0.760697079226745 0.0327453 0.9383458 prediction 0.521394158453491 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:654080 chr12:654081 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_106411 0 0 1 0 2 exosome 0.500231643921092 0.50023164390386 0.8766916 0 hm5C_site_59556 DeepMRMD:0.8766916;iRNA_m5C:0 59557 chr18 44013210 44013210 1 + T G rs563079733 44013208 + 44013188 44013228 41 ACCTCCTGCCGCCACTTCCACCTGGGCCCCCCGCAGCCGCA ACCTCCTGCCGCCACTTCCACCGGGGCCCCCCGCAGCCGCA < 41bp 0.448570369154139 0.760697007223352 0.27219152 0.91051424 prediction 0.521394014446704 Functional Gain - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44013208 chr18:44013210 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_106412 0 0 0 0 1 nucleus 0.500231643921093 0.500231643378839 0.82102848 0 hm5C_site_59557 DeepMRMD:0.82102848;iRNA_m5C:0 59558 chrX 591835 591835 1 + T A LUAD 591831 + 591811 591851 41 CGGAGGGCGGCGGCCACTGCCCGGTGCATTTGTTCAAGGAC CGGAGGGCGGCGGCCACTGCCCGGAGCATTTGTTCAAGGAC < 41bp 0.447716103707004 0.760696624598252 0.4070347 0.88758063 prediction 0.521393249196504 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:591831 chrX:591835 nonsynonymous SNV 0.813 1 25 hm5C_associated_SNPs_106413 0 0 0 0 1 Nucleus 0.500243127065857 0.500231682412841 0.77516126 0 hm5C_site_59558 DeepMRMD:0.77516126;iRNA_m5C:0 59559 chr6 26045939 26045939 1 + C G rs9461231 26045938 + 26045918 26045958 41 CAGGAGGCTTGTGAGGCCTACCTGGTGGGACTCTTCGAAGA CAGGAGGCTTGTGAGGCCTACGTGGTGGGACTCTTCGAAGA < 41bp 0.460360060358974 0.760675413616154 0.2094214 0.45012572 prediction 0.521350827232309 Functional Gain - HIST1H3C ENSG00000196532 CDS Human other chr6:26045938 chr6:26045939 nonsynonymous SNV 0.919 0 22 hm5C_associated_SNPs_106414 0 0 0 0 0 exosome 0.500231643921092 0.500231643921085 0 0 hm5C_site_59559 DeepMRMD:0;iRNA_m5C:0 59560 chr18 12325862 12325862 1 + C G rs139093890 12325858 + 12325838 12325878 41 GGTGGCCGTGTGCGACATCCCGCCCCGCGGCCTGAAGATGG GGTGGCCGTGTGCGACATCCCGCCGCGCGGCCTGAAGATGG < 41bp 0.537002211394763 0.797674551116727 0.07582873 0.3268727 prediction 0.521344679443928 Functional Gain - TUBB6 ENSG00000176014 CDS Human protein_coding chr18:12325858 chr18:12325862 synonymous SNV . 0 25 hm5C_associated_SNPs_106415 0 0 0 0 0 Endoplasmic reticulum 0.500231649630093 0.500231643966497 0 0 hm5C_site_59560 DeepMRMD:0;iRNA_m5C:0 59561 chr12 57911175 57911175 1 + T G SKCM 57911172 + 57911152 57911192 41 AGTGTCCCGAAGGAGAAAGGCAATGACTCAGCTGCCATCTC AGTGTCCCGAAGGAGAAAGGCAAGGACTCAGCTGCCATCTC < 41bp 0.366038282314542 0.76066875718305 0.23143518 0.87468493 prediction 0.5213375143661 Functional Gain - DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911172 chr12:57911175 synonymous SNV . 0 24 hm5C_associated_SNPs_106416 0 0 1 0 0 Cytosol 0.500231882607998 0.50023163935969 0.74936986 0 hm5C_site_59561 DeepMRMD:0.74936986;iRNA_m5C:0 59562 chr16 53878098 53878098 1 + T A LIHC 53878094 + 53878074 53878114 41 AGAGGAAAGTGAGGATGACTCTCATCTCGAAGGCAGGGATC AGAGGAAAGTGAGGATGACTCTCAACTCGAAGGCAGGGATC < 41bp 0.441156621521089 0.760653218726062 0.010984808 0.035553634 prediction 0.521306437452123 Functional Gain - FTO ENSG00000140718 CDS Human protein_coding chr16:53878094 chr16:53878098 nonsynonymous SNV 0.101 0 25 hm5C_associated_SNPs_106417 1 0 1 0 1 Nucleus 0.500231643916024 0.500231643921092 0 1.01358921256178e-11 hm5C_site_59562 DeepMRMD:0;iRNA_m5C:1.01358921256178e-11 Growth retardation, developmental delay, coarse facies, and early death Growth retardation, developmental delay, coarse facies, and early death 59563 chr14 57858194 57858194 1 + C G rs45583845 57858193 + 57858173 57858213 41 CAATGGACTGGCCGAGGGCACCGAGCAGGAGGAGGAGGAGG CAATGGACTGGCCGAGGGCACGGAGCAGGAGGAGGAGGAGG < 41bp 0.578794223997774 0.839440239663501 0.47881705 0.8944807 prediction 0.521292031331453 Functional Gain - NAA30 ENSG00000139977 CDS Human protein_coding chr14:57858193 chr14:57858194 synonymous SNV . 0 22 hm5C_associated_SNPs_106418 0 0 1 0 0 Ribosome 0.500231646580588 0.50023164392115 0.7889614 0 hm5C_site_59563 DeepMRMD:0.7889614;iRNA_m5C:0 59564 chr1 1458897 1458897 1 + C A UCEC 1458893 + 1458873 1458913 41 CCCCTTCCCCTCCGGCAGGTCAGCCGGCGGCTCCTCAGTCG CCCCTTCCCCTCCGGCAGGTCAGCAGGCGGCTCCTCAGTCG < 41bp 0.656048079730066 0.916688983893224 0.6921683 0.75150836 prediction 0.521281808326317 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1458893 chr1:1458897 synonymous SNV . 0 25 hm5C_associated_SNPs_106419 0 0 1 0 1 Ribosome 0.50023164392124 0.500231643915853 0.11868012 0 hm5C_site_59564 DeepMRMD:0.11868012;iRNA_m5C:0 59565 chr2 175265765 175265765 1 + T G COAD 175265763 + 175265743 175265783 41 GCTGAAAAAGCCCTCAATGTCATTGTTGACTTACTAGAAAA GCTGAAAAAGCCCTCAATGTCAGTGTTGACTTACTAGAAAA < 41bp 0.436029733145705 0.760640625148643 0.07215834 0.27238938 prediction 0.521281250297285 Functional Gain - SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175265763 chr2:175265765 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_106420 0 0 1 0 1 exosome 0.500231643640735 0.500231640655421 0 0 hm5C_site_59565 DeepMRMD:0;iRNA_m5C:0 59566 chr10 99512859 99512859 1 + T C COAD 99512857 + 99512837 99512877 41 GCCCTGCAGGACAACGGGTTCCTGAGCAAGAATGAGGTGCT GCCCTGCAGGACAACGGGTTCCCGAGCAAGAATGAGGTGCT < 41bp 0.497892537473271 0.760624060527295 0.24161655 0.3255493 prediction 0.521248121054589 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99512857 chr10:99512859 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_106421 0 0 1 1 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59566 DeepMRMD:0;iRNA_m5C:0 59567 chr6 106553146 106553146 1 + C A UCEC 106553145 + 106553125 106553165 41 GGCCCCGGCTCTCAAGAGCACCGGGACTCCTACGCTTACTT GGCCCCGGCTCTCAAGAGCACAGGGACTCCTACGCTTACTT < 41bp 0.497066052988263 0.760623985701161 0.92711556 0.9296136 prediction 0.521247971402322 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106553145 chr6:106553146 synonymous SNV . 0 22 hm5C_associated_SNPs_106422 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0.00499608000000018 0 hm5C_site_59567 DeepMRMD:0.00499608000000018;iRNA_m5C:0 59568 chr1 28661116 28661116 1 + C A STAD 28661112 + 28661092 28661132 41 GGGGCACCCTGGCATCTGCGCTACCTGGGACAGCCAGAAAT GGGGCACCCTGGCATCTGCGCTACATGGGACAGCCAGAAAT < 41bp 0.353590546350936 0.760622148594646 0.31619287 0.5842489 prediction 0.521244297189292 Functional Gain - MED18 ENSG00000130772 CDS Human protein_coding chr1:28661112 chr1:28661116 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106423 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643835405 0.1684978 0 hm5C_site_59568 DeepMRMD:0.1684978;iRNA_m5C:0 59569 chr17 27381604 27381604 1 + T C UCEC 27381602 + 27381582 27381622 41 GTTACTGGCGAGAGATGGTTCCTGGGAGCTATGGTGTGTCC GTTACTGGCGAGAGATGGTTCCCGGGAGCTATGGTGTGTCC < 41bp 0.516511109395337 0.777120750134166 0.14351287 0.41599846 prediction 0.521219281477658 Functional Gain - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27381602 chr17:27381604 synonymous SNV . 0 23 hm5C_associated_SNPs_106424 0 0 0 0 1 cytosol 0.500231643921088 0.500231643921092 0 8.65973959207622e-15 hm5C_site_59569 DeepMRMD:0;iRNA_m5C:8.65973959207622e-15 59570 chr16 3109081 3109081 1 + G T COAD 3109085 - 3109065 3109105 41 CCCCCATCAGCGGGAGGCTACACCCCCCACCAGCAGGGGCA CCCCCATCAGCGGGAGGCTACACCACCCACCAGCAGGGGCA < 41bp 0.376666164636227 0.760597467385128 0.29973215 0.4031601 prediction 0.521194934770256 Functional Gain - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3109085 chr16:3109081 synonymous SNV . 0 25 hm5C_associated_SNPs_106425 0 0 0 0 1 chromatin 0.500231643921093 0.500231643921092 0 0 hm5C_site_59570 DeepMRMD:0;iRNA_m5C:0 59571 chr11 65633313 65633313 1 + C T SKCM 65633312 + 65633292 65633332 41 GCCTATGATGCCTGTGCCACCCCCAAGGAACAAGAGACACT GCCTATGATGCCTGTGCCACCTCCAAGGAACAAGAGACACT < 41bp 0.512176756588906 0.772772199112642 0.030586362 0.95078516 prediction 0.521190885047473 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65633312 chr11:65633313 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_106426 0 0 1 0 2 Ribosome 0.500231658785255 0.500231604655797 0.90157032 0 hm5C_site_59571 DeepMRMD:0.90157032;iRNA_m5C:0 59572 chr20 9498830 9498830 1 + C T SKCM 9498829 + 9498809 9498849 41 ACCATGATCCTGTCTGCGGTCCACATCCAACCTTTTGACAT ACCATGATCCTGTCTGCGGTCTACATCCAACCTTTTGACAT < 41bp 0.507638124373876 0.768231976236243 0.022997916 0.50061953 prediction 0.521187703724734 Functional Gain - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9498829 chr20:9498830 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_106427 0 0 0 0 1 exosome 0.500167235982295 0.500227469420865 0.00123906000000007 0.000120466877139513 hm5C_site_59572 DeepMRMD:0.00123906000000007;iRNA_m5C:0.000120466877139513 59573 chr14 69927515 69927515 1 + T G rs577142821 69927512 + 69927492 69927532 41 GCCCTCTTAGCTCTCAGAAGCTATGTATGGGCTTTCCCAGA GCCCTCTTAGCTCTCAGAAGCTAGGTATGGGCTTTCCCAGA < 41bp 0.418409518374593 0.76058843537142 0.015565932 0.101346076 prediction 0.52117687074284 Functional Gain - SLC39A9 ENSG00000029364 UTR3 Human protein_coding chr14:69927512 chr14:69927515 . . 0 24 hm5C_associated_SNPs_106428 0 0 1 0 0 Ribosome 0.500231643912853 0.500231643921092 0 1.64790403545112e-11 hm5C_site_59573 DeepMRMD:0;iRNA_m5C:1.64790403545112e-11 59574 chr3 196387128 196387128 1 + C G UCEC 196387124 + 196387104 196387144 41 AGGGCGGCGCTTTCGACGGCCTGGCTGAGCTGAGGCACCTC AGGGCGGCGCTTTCGACGGCCTGGGTGAGCTGAGGCACCTC < 41bp 0.571704708537677 0.832291207308919 0.37930733 0.8783421 prediction 0.521172997542484 Functional Gain - NRROS ENSG00000174004 CDS Human protein_coding chr3:196387124 chr3:196387128 nonsynonymous SNV 0.058 0 25 hm5C_associated_SNPs_106429 0 0 1 0 0 chromatin 0.500232094146011 0.500231643921092 0.7566842 0 hm5C_site_59574 DeepMRMD:0.7566842;iRNA_m5C:0 59575 chr17 57287460 57287460 1 + C G rs375060156 57287456 + 57287436 57287476 41 AGACCTTCTAATGGGAGCATCAGCCTGGATGGGCTCTGAAA AGACCTTCTAATGGGAGCATCAGCGTGGATGGGCTCTGAAA < 41bp 0.53741797969405 0.797996636952401 0.2762453 0.7917366 prediction 0.521157314516702 Functional Gain - SMG8 ENSG00000167447 CDS Human protein_coding chr17:57287456 chr17:57287460 synonymous SNV . 0 25 hm5C_associated_SNPs_106430 0 0 1 0 0 chromatin 0.50023164392089 0.500231643886905 0.5834732 0 hm5C_site_59575 DeepMRMD:0.5834732;iRNA_m5C:0 59576 chr14 24885022 24885022 1 + C A LUSC 24885018 + 24884998 24885038 41 ACACGCCAACCTATGCCCACCTGGCAGCCGTGGCCTGCGGC ACACGCCAACCTATGCCCACCTGGAAGCCGTGGCCTGCGGC < 41bp 0.358271003073079 0.760554672530855 0.19725096 0.33959648 prediction 0.521109345061711 Functional Gain - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24885018 chr14:24885022 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_106431 0 0 1 0 0 Exosome 0.500231643921092 0.500231737448493 0 1.87054800759867e-07 hm5C_site_59576 DeepMRMD:0;iRNA_m5C:1.87054800759867e-07 59577 chr2 11052609 11052609 1 + C A LUAD 11052605 + 11052585 11052625 41 GCCGGGCAGCCAGAGCTCCGCTGCCAGCGACGACATAGAGA GCCGGGCAGCCAGAGCTCCGCTGCAAGCGACGACATAGAGA < 41bp 0.649129043550708 0.909664496376121 0.032249272 0.07611832 prediction 0.521070905650825 Functional Gain - KCNF1 ENSG00000162975 CDS Human protein_coding chr2:11052605 chr2:11052609 synonymous SNV . 0 25 hm5C_associated_SNPs_106432 0 0 0 0 0 exosome 0.500231643903393 0.500231645204843 0 2.60289989562068e-09 hm5C_site_59577 DeepMRMD:0;iRNA_m5C:2.60289989562068e-09 59578 chr16 227039 227039 1 + C A rs1060339 227035 + 227015 227055 41 GAAGGTGGCCGACGCGCTGACCAACGCCGTGGCGCACGTGG GAAGGTGGCCGACGCGCTGACCAAAGCCGTGGCGCACGTGG < 41bp 0.369792092916672 0.760533092356042 0.052032262 0.07618195 prediction 0.521066184712085 Functional Gain - HBA1 ENSG00000206172 CDS Human protein_coding chr16:227035 chr16:227039 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_106433 1 0 0 0 1 Ribosome 0.500231253078692 0.50023164718414 0 7.88210894997476e-07 hm5C_site_59578 DeepMRMD:0;iRNA_m5C:7.88210894997476e-07 alpha Thalassemia alpha Thalassemia 59579 chr4 39776523 39776523 1 + T A COAD 39776519 + 39776499 39776539 41 ACTATTGGCAGCTGCAGAGCCAGATGATCCACAGGATGCTG ACTATTGGCAGCTGCAGAGCCAGAAGATCCACAGGATGCTG < 41bp 0.580978369926935 0.841506072052415 0.9025941 0.6854531 prediction 0.521055404250959 Functional Gain - UBE2K ENSG00000078140 CDS Human protein_coding chr4:39776519 chr4:39776523 stoploss 0.979 2 25 hm5C_associated_SNPs_106434 0 0 1 0 2 Cytosol 0.500231696652643 0.500231643923296 0 0 hm5C_site_59579 DeepMRMD:0;iRNA_m5C:0 59580 chr2 73476181 73476181 1 + T C LUSC 73476179 + 73476159 73476199 41 ATGACAAGTTAGAGAAGATCCATCATTCTGGAGCCAAAGTT ATGACAAGTTAGAGAAGATCCACCATTCTGGAGCCAAAGTT < 41bp 0.566314769807159 0.826842451684544 0.050397217 0.040304333 prediction 0.521055363754772 Functional Gain - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476179 chr2:73476181 synonymous SNV . 0 23 hm5C_associated_SNPs_106435 0 0 1 0 1 Cytosol 0.500231643920691 0.50023164392086 0 3.37951888695898e-13 hm5C_site_59580 DeepMRMD:0;iRNA_m5C:3.37951888695898e-13 59581 chr7 143807515 143807515 1 + T G rs2961149 143807512 + 143807492 143807532 41 CTGTCCCTGTTTCACAGTGTCTTTAATCCAATGCTGAACCC CTGTCCCTGTTTCACAGTGTCTTGAATCCAATGCTGAACCC < 41bp 0.386065979994316 0.760526125119788 0.16697279 0.27011693 prediction 0.521052250239576 Functional Gain - OR2A2 ENSG00000221989 CDS Human protein_coding chr7:143807512 chr7:143807515 nonsynonymous SNV 0.012 0 24 hm5C_associated_SNPs_106436 0 0 0 0 0 unknown 0.500232521266144 0.500231482368559 0 0 hm5C_site_59581 DeepMRMD:0;iRNA_m5C:0 59582 chr12 85439884 85439884 1 + T C UCEC 85439882 + 85439862 85439902 41 TTGTTCCTGAGCCTAGTCCTCATGACTTGCCTATGGATGAA TTGTTCCTGAGCCTAGTCCTCACGACTTGCCTATGGATGAA < 41bp 0.515147945327543 0.775665141074948 0.24944842 0.07821417 prediction 0.521034391494809 Functional Gain - LRRIQ1 ENSG00000133640 CDS Human protein_coding chr12:85439882 chr12:85439884 synonymous SNV . 0 23 hm5C_associated_SNPs_106437 0 0 0 0 1 cytosol 0.500231643921014 0.500231643920473 0 0 hm5C_site_59582 DeepMRMD:0;iRNA_m5C:0 59583 chr1 33292001 33292001 1 + T G COAD 33291999 + 33291979 33292019 41 TACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAG TACTCCCCGAGAGAAAAATTCAGCGTACAGCCTGGGACCAG < 41bp 0.429268333997975 0.760514125642798 0.35946727 0.7473178 prediction 0.521028251285596 Functional Gain - S100PBP ENSG00000116497 CDS Human protein_coding chr1:33291999 chr1:33292001 nonsynonymous SNV 0.781 0 23 hm5C_associated_SNPs_106438 0 0 1 0 0 membrane 0.500231643921092 0.500231643921092 0.4946356 0 hm5C_site_59583 DeepMRMD:0.4946356;iRNA_m5C:0 59584 chr2 75081509 75081509 1 + T C COAD 75081507 + 75081487 75081527 41 GCAAGGAGATGGAGAAAGGGCTTGGAGCCACCACTCACCCT GCAAGGAGATGGAGAAAGGGCTCGGAGCCACCACTCACCCT < 41bp 0.521129402877486 0.78164327923846 0.025935352 0.06791592 prediction 0.521027752721949 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75081507 chr2:75081509 synonymous SNV . 0 23 hm5C_associated_SNPs_106439 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_59584 DeepMRMD:0;iRNA_m5C:0 59585 chr9 123911018 123911018 1 + T A LAML 123911014 + 123910994 123911034 41 CCTTAAGTACTCAGCCTCAACTCCTGTTAGAAAACCACGCC CCTTAAGTACTCAGCCTCAACTCCAGTTAGAAAACCACGCC < 41bp 0.609968183666801 0.870468130232707 0.17632797 0.8939522 prediction 0.520999893131811 Functional Gain - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123911014 chr9:123911018 synonymous SNV . 0 25 hm5C_associated_SNPs_106440 0 0 1 0 1 chromatin 0.500231643920637 0.500231643884881 0.7879044 0 hm5C_site_59585 DeepMRMD:0.7879044;iRNA_m5C:0 59586 chrX 64722857 64722857 1 + T C LUSC 64722855 + 64722835 64722875 41 CAACCATGTTATGAGCCAGTCATGGTACGGAGCGTGCCTGA CAACCATGTTATGAGCCAGTCACGGTACGGAGCGTGCCTGA < 41bp 0.502438031372845 0.762936601210857 0.1402643 0.06914917 prediction 0.520997139676026 Functional Gain - ZC3H12B ENSG00000102053 CDS Human protein_coding chrX:64722855 chrX:64722857 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106441 0 0 0 0 0 Endoplasmic reticulum 0.500232000166402 0.500231988955513 0 0 hm5C_site_59586 DeepMRMD:0;iRNA_m5C:0 59587 chr6 50682991 50682991 1 + C A LUSC 50682987 + 50682967 50683007 41 TTCTCCACTAACCACCAGTACACCCCGCTCCACCACCAGTC TTCTCCACTAACCACCAGTACACCACGCTCCACCACCAGTC < 41bp 0.328486542741592 0.760497066694422 0.07542315 0.21004355 prediction 0.520994133388843 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50682987 chr6:50682991 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_106442 0 0 0 1 0 unknown 0.500231643921093 0.500231643921092 0 0 hm5C_site_59587 DeepMRMD:0;iRNA_m5C:0 59588 chrX 110968219 110968219 1 + C A UCEC 110968215 + 110968195 110968235 41 TACCCAAGTGATGTCTGTTCCTGCCTGGAATGCTATGCCCA TACCCAAGTGATGTCTGTTCCTGCATGGAATGCTATGCCCA < 41bp 0.356453993312435 0.760487806608119 0.12009823 0.64557964 prediction 0.520975613216239 Functional Gain - ALG13 ENSG00000101901 CDS Human protein_coding chrX:110968215 chrX:110968219 synonymous SNV . 0 25 hm5C_associated_SNPs_106443 0 0 1 0 2 Cytosol 0.500231637123321 0.500231594939702 0.29115928 0 hm5C_site_59588 DeepMRMD:0.29115928;iRNA_m5C:0 59589 chr12 52309927 52309927 1 + C T CESC 52309926 + 52309906 52309946 41 GAGGTGCTGGACGAGCAGATCCGCACGGACTGCTTTGAGTC GAGGTGCTGGACGAGCAGATCTGCACGGACTGCTTTGAGTC < 41bp 0.51228941907736 0.772776857283611 0.34914106 0.53413737 prediction 0.520974876412503 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309926 chr12:52309927 nonsynonymous SNV 0.256 5 22 hm5C_associated_SNPs_106444 0 0 0 0 1 Endoplasmic reticulum 0.500231645094209 0.500231662038086 0.0682747399999999 3.38877530481341e-08 hm5C_site_59589 DeepMRMD:0.0682747399999999;iRNA_m5C:3.38877530481341e-08 59590 chr8 74209456 74209456 1 + C T SKCM 74209455 + 74209435 74209475 41 ATGGTGAGGAAGAAATTCTGCCCCACTGTAACTTGCAGGTT ATGGTGAGGAAGAAATTCTGCTCCACTGTAACTTGCAGGTT < 41bp 0.504658885688637 0.765142330107205 0.1499139 0.18547168 prediction 0.520966888837136 Functional Gain - RDH10 ENSG00000121039 CDS Human protein_coding chr8:74209455 chr8:74209456 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_106445 0 0 1 0 1 Ribosome 0.500231643920264 0.500231643908232 0 0 hm5C_site_59590 DeepMRMD:0;iRNA_m5C:0 59591 chr6 44364085 44364085 1 + T G rs549324401 44364083 + 44364063 44364103 41 TTTTAATTTTTGCAGATGAACTTGAGATGCTTTCTGAAGCC TTTTAATTTTTGCAGATGAACTGGAGATGCTTTCTGAAGCC < 41bp 0.593946985092705 0.854428305375401 0.29432845 0.5898278 prediction 0.520962640565392 Functional Gain - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44364083 chr6:44364085 synonymous SNV . 0 23 hm5C_associated_SNPs_106446 0 0 1 0 2 Nucleus 0.50023167728827 0.50023770981013 0.1796556 1.20650437194225e-05 hm5C_site_59591 DeepMRMD:0.1796556;iRNA_m5C:1.20650437194225e-05 59592 chr5 140755457 140755457 1 + T A LUAD 140755453 + 140755433 140755473 41 GACAGAGACTCGGGCCAGAACGCCTGGCTGTCCTACCGCCT GACAGAGACTCGGGCCAGAACGCCAGGCTGTCCTACCGCCT < 41bp 0.429808363211555 0.760474609823055 0.8777091 0.9237072 prediction 0.52094921964611 Functional Gain - PCDHGA6 ENSG00000253731 CDS Human protein_coding chr5:140755453 chr5:140755457 nonsynonymous SNV 0.991 3 25 hm5C_associated_SNPs_106447 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0919961999999999 0 hm5C_site_59592 DeepMRMD:0.0919961999999999;iRNA_m5C:0 59593 chr17 48761062 48761062 1 + C G rs41280128 48761061 + 48761041 48761081 41 ATTATTCTGTGCGCTACCGGCCGGGCCTAGACCTGGTGCTG ATTATTCTGTGCGCTACCGGCGGGGCCTAGACCTGGTGCTG < 41bp 0.443260713534954 0.760467468688252 0.8770642 0.9019468 prediction 0.520934937376504 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48761061 chr17:48761062 nonsynonymous SNV 0.792 2 22 hm5C_associated_SNPs_106448 0 0 1 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.0497652000000002 0 hm5C_site_59593 DeepMRMD:0.0497652000000002;iRNA_m5C:0 59594 chr12 57619127 57619127 1 + C A BLCA 57619123 + 57619103 57619143 41 GGCTGCCCGGGCCTGTCCCCCACCCTCTGCAGTCTACGCTC GGCTGCCCGGGCCTGTCCCCCACCATCTGCAGTCTACGCTC < 41bp 0.575798846970011 0.836265890805814 0.37217808 0.16306245 prediction 0.520934087671606 Functional Gain - NXPH4 ENSG00000182379 CDS Human protein_coding chr12:57619123 chr12:57619127 nonsynonymous SNV 0.183 1 25 hm5C_associated_SNPs_106449 0 0 1 0 0 exosome 0.50023164395197 0.500231643919144 0 0 hm5C_site_59594 DeepMRMD:0;iRNA_m5C:0 59595 chr22 39450528 39450528 1 + C G rs1985760 39450524 + 39450504 39450544 41 GGATTACAGGCGTGAGCCACCTGGCCAGGCTTAGGCTGGTC GGATTACAGGCGTGAGCCACCTGGGCAGGCTTAGGCTGGTC < 41bp 0.526812263013875 0.7872734122112 0.47260422 0.7805362 prediction 0.52092229839465 Functional Gain - APOBEC3F ENSG00000239713 intronic Human protein_coding chr22:39450524 chr22:39450528 . . 0 25 hm5C_associated_SNPs_106450 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.5610724 0 hm5C_site_59595 DeepMRMD:0.5610724;iRNA_m5C:0 59596 chr13 43148546 43148546 1 + C G rs138818878 43148542 + 43148522 43148562 41 GCCCCCTGCACGCCCCGCCGCCGCCTGCGCCGCACCAGCCC GCCCCCTGCACGCCCCGCCGCCGCGTGCGCCGCACCAGCCC < 41bp 0.539568928976966 0.800028374215849 0.17052755 0.4681383 prediction 0.520918890477767 Functional Gain - TNFSF11 ENSG00000120659 CDS Human protein_coding chr13:43148542 chr13:43148546 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_106451 1 1 0 0 0 exosome 0.500231671107255 0.500231643917416 0 0 hm5C_site_59596 DeepMRMD:0;iRNA_m5C:0 Osteopetrosis Osteopetrosis 59597 chr14 104472773 104472773 1 + T C UCEC 104472771 + 104472751 104472791 41 AGAGAGAAGATGAAAACCCCCATGATGGTGAATTGACCTTC AGAGAGAAGATGAAAACCCCCACGATGGTGAATTGACCTTC < 41bp 0.558005122118023 0.818458588609811 0.4217553 0.27970707 prediction 0.520906932983575 Functional Gain - TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104472771 chr14:104472773 synonymous SNV . 0 23 hm5C_associated_SNPs_106452 0 0 0 0 1 nucleus 0.500231644065512 0.500231643924411 0 0 hm5C_site_59597 DeepMRMD:0;iRNA_m5C:0 59598 chr3 196730634 196730634 1 + C A rs529093598 196730630 + 196730610 196730650 41 GCAGCCTCCTGGCCAAAATCCTCCCGGGACACCCCACCTGG GCAGCCTCCTGGCCAAAATCCTCCAGGGACACCCCACCTGG < 41bp 0.644535244838875 0.90498834056128 0.41380745 0.95125306 prediction 0.52090619144481 Functional Gain - MELTF-AS1 ENSG00000228109 ncRNA_exonic Human antisense chr3:196730630 chr3:196730634 . . 0 25 hm5C_associated_SNPs_106453 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.90250612 0 hm5C_site_59598 DeepMRMD:0.90250612;iRNA_m5C:0 59599 chr22 20195224 20195224 1 + C G rs529506407 20195220 + 20195200 20195240 41 TGTCCCCTTCTGCCCTTCCCCTGGCTCCCACCGTCCACATC TGTCCCCTTCTGCCCTTCCCCTGGGTCCCACCGTCCACATC < 41bp 0.530718217343516 0.791170359577101 0.23905775 0.62104845 prediction 0.520904284467169 Functional Gain - LINC00896 ENSG00000236499 ncRNA_exonic Human lincRNA chr22:20195220 chr22:20195224 . . 0 25 hm5C_associated_SNPs_106454 0 0 0 0 0 unknown 0.500231649366004 0.500231644107966 0.2420969 0 hm5C_site_59599 DeepMRMD:0.2420969;iRNA_m5C:0 59600 chr1 67147760 67147760 1 + C A LUSC 67147756 + 67147736 67147776 41 GGTGTCCCCACCAGCTACACCAGACAACCCAGCTGACTCCC GGTGTCCCCACCAGCTACACCAGAAAACCCAGCTGACTCCC < 41bp 0.346198909439862 0.760423130868193 0.48089537 0.7901305 prediction 0.520846261736386 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67147756 chr1:67147760 nonsynonymous SNV 0.991 0 25 hm5C_associated_SNPs_106455 0 0 0 0 0 Cytosol 0.500231643921088 0.500231643921092 0.580261 9.10382880192628e-15 hm5C_site_59600 DeepMRMD:0.580261;iRNA_m5C:9.10382880192628e-15 59601 chr17 19281359 19281359 1 + C A rs75007942 19281355 + 19281335 19281375 41 ATTCCCAGAGCTCCTGGGACCAAGCAAATGGCGGACACAAT ATTCCCAGAGCTCCTGGGACCAAGAAAATGGCGGACACAAT < 41bp 0.502071635916612 0.762492270321027 0.27796212 0.32589602 prediction 0.52084126880883 Functional Gain - B9D1;MAPK7 ENSG00000108641;ENSG00000166484 UTR5 Human other chr17:19281355 chr17:19281359 . . 0 25 hm5C_associated_SNPs_106456 0 0 0 0 1 unknown 0.500231643922039 0.500231643921149 0 0 hm5C_site_59601 DeepMRMD:0;iRNA_m5C:0 59602 chr3 3841483 3841483 1 + C G rs567775151 3841482 + 3841462 3841502 41 TGCGGGCTGGGAAGGAGGCGCCGCTCAGCTAGTCCTCCTCC TGCGGGCTGGGAAGGAGGCGCGGCTCAGCTAGTCCTCCTCC < 41bp 0.489629042362695 0.760420446058253 0.19203013 0.3392715 prediction 0.520840892116505 Functional Gain - LRRN1 ENSG00000175928 UTR5 Human protein_coding chr3:3841482 chr3:3841483 . . 0 22 hm5C_associated_SNPs_106457 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 2.22044604925031e-16 hm5C_site_59602 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 59603 chr15 50526114 50526114 1 + T C rs34984126 50526112 + 50526092 50526132 41 CCATCAAAATGAAAGAAAACCATGAATTTGATGGAAAGAAA CCATCAAAATGAAAGAAAACCACGAATTTGATGGAAAGAAA < 41bp 0.485131842985556 0.760419267419057 0.094872475 0.04834208 prediction 0.520838534838113 Functional Gain - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50526112 chr15:50526114 synonymous SNV . 0 23 hm5C_associated_SNPs_106458 0 0 1 0 2 Ribosome 0.500229988617004 0.500230322364237 0 6.67494465256269e-07 hm5C_site_59603 DeepMRMD:0;iRNA_m5C:6.67494465256269e-07 59604 chr9 139252760 139252760 1 + C G rs549254673 139252759 + 139252739 139252779 41 ACGTCCTCCCGAGGCCATTGCCGAGGACAGGCACTGGGCAT ACGTCCTCCCGAGGCCATTGCGGAGGACAGGCACTGGGCAT < 41bp 0.564675350261867 0.825087217613708 0.8918845 0.92245746 prediction 0.520823734703682 Functional Gain - GPSM1 ENSG00000160360 UTR3 Human protein_coding chr9:139252759 chr9:139252760 . . 0 22 hm5C_associated_SNPs_106459 0 0 1 0 0 Cytosol 0.500231644675849 0.500231642631304 0.06114592 0 hm5C_site_59604 DeepMRMD:0.06114592;iRNA_m5C:0 59605 chr4 84511401 84511401 1 + C T SKCM 84511400 + 84511380 84511420 41 TGTGTTGCCAACCATACTTCCCCCATTGATGTTTTAATCTT TGTGTTGCCAACCATACTTCCTCCATTGATGTTTTAATCTT < 41bp 0.522907023157032 0.783304805371896 0.010694504 0.9568778 prediction 0.520795564429728 Functional Gain - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84511400 chr4:84511401 nonsynonymous SNV 0.293 4 22 hm5C_associated_SNPs_106460 0 0 0 0 2 chromatin 0.500227284983392 0.500226082457018 0.9137556 0 hm5C_site_59605 DeepMRMD:0.9137556;iRNA_m5C:0 59606 chr14 101528419 101528419 1 + T G COAD 101528416 + 101528396 101528436 41 GGTTGCCCTTGGTGAATTCGCTTTATTTATGTTGAATCACA GGTTGCCCTTGGTGAATTCGCTTGATTTATGTTGAATCACA < 41bp 0.446312991207268 0.760385969506817 0.09083179 0.15050685 prediction 0.520771939013634 Functional Gain - MIR377 ENSG00000199015 ncRNA_exonic Human miRNA chr14:101528416 chr14:101528419 . . 0 24 hm5C_associated_SNPs_106461 0 0 0 0 0 unknown 0.50023164392298 0.500231643921092 0 0 hm5C_site_59606 DeepMRMD:0;iRNA_m5C:0 59607 chr7 101188710 101188710 1 + C G rs147296294 101188706 + 101188686 101188726 41 ACCCGGCCCAGCAGGCAACCCAGGCCCCTCACCAAACAGCC ACCCGGCCCAGCAGGCAACCCAGGGCCCTCACCAAACAGCC < 41bp 0.561223584704878 0.821608695108534 0.5707044 0.899104 prediction 0.520770220807312 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101188706 chr7:101188710 synonymous SNV . 0 25 hm5C_associated_SNPs_106462 0 0 0 0 2 exosome 0.500231643924393 0.500231643921092 0.6567992 0 hm5C_site_59607 DeepMRMD:0.6567992;iRNA_m5C:0 59608 chr1 152785042 152785042 1 + C A COAD 152785038 + 152785018 152785058 41 GTGTCCCCCTAAGTGTCCTCCAGTCTCTTCCTGCTGCAGTG GTGTCCCCCTAAGTGTCCTCCAGTATCTTCCTGCTGCAGTG < 41bp 0.371042697875933 0.760373214025154 0.19937152 0.039721996 prediction 0.520746428050307 Functional Gain - LCE1B ENSG00000196734 CDS Human protein_coding chr1:152785038 chr1:152785042 synonymous SNV . 0 25 hm5C_associated_SNPs_106463 0 0 0 0 0 unknown 0.500231643921276 0.500231643921092 0 0 hm5C_site_59608 DeepMRMD:0;iRNA_m5C:0 59609 chr8 38854608 38854608 1 + C A CESC 38854604 + 38854584 38854624 41 TGGGGTCTGGCGCGCGCTTTCCCTCGGGGACCCTTCGTGTC TGGGGTCTGGCGCGCGCTTTCCCTAGGGGACCCTTCGTGTC < 41bp 0.379392838026359 0.760372894939575 0.029551923 0.0809938 prediction 0.52074578987915 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38854604 chr8:38854608 stopgain 0.000 0 25 hm5C_associated_SNPs_106464 0 0 1 0 1 Ribosome 0.500231643884574 0.500231643921092 0 7.30366878087807e-11 hm5C_site_59609 DeepMRMD:0;iRNA_m5C:7.30366878087807e-11 59610 chr12 69995145 69995145 1 + C G OV 69995141 + 69995121 69995161 41 GTCGATCTTTGGACCAGTTTCTAGCAAAGTTGTGTTTGAAA GTCGATCTTTGGACCAGTTTCTAGGAAAGTTGTGTTTGAAA < 41bp 0.532854548375261 0.793226237731448 0.20682937 0.76770365 prediction 0.520743378712374 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69995141 chr12:69995145 nonsynonymous SNV 0.761 1 25 hm5C_associated_SNPs_106465 0 0 1 0 1 Nucleus 0.500231642223747 0.500231643921207 0.5354073 3.39491990075658e-09 hm5C_site_59610 DeepMRMD:0.5354073;iRNA_m5C:3.39491990075658e-09 59611 chr1 201252715 201252715 1 + C G rs149821471 201252714 + 201252694 201252734 41 GCGGACCACGCACTCTATGGCCGTAGGGAGCCGCTGAGAGC GCGGACCACGCACTCTATGGCGGTAGGGAGCCGCTGAGAGC < 41bp 0.524924199749672 0.785285180850359 0.54178894 0.89848834 prediction 0.520721962201375 Functional Gain - PKP1 ENSG00000081277 UTR5 Human protein_coding chr1:201252714 chr1:201252715 . . 0 22 hm5C_associated_SNPs_106466 1 0 0 0 0 exosome 0.500231628629319 0.500231643921182 0.7133988 3.05837248859575e-08 hm5C_site_59611 DeepMRMD:0.7133988;iRNA_m5C:3.05837248859575e-08 Ectodermal dysplasia skin fragility syndrome Ectodermal dysplasia skin fragility syndrome 59612 chr17 7758519 7758519 1 + C A PAAD 7758515 + 7758495 7758535 41 AATCTGCTGGTGGCTGCCTTCAATCTTCTCCTGCTGGTGCT AATCTGCTGGTGGCTGCCTTCAATATTCTCCTGCTGGTGCT < 41bp 0.363688083378495 0.760358726279008 0.16885433 0.097649425 prediction 0.520717452558016 Functional Gain - TMEM88 ENSG00000167874 CDS Human protein_coding chr17:7758515 chr17:7758519 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_106467 0 0 0 0 1 nucleoplasm 0.500231643921092 0.500231643921089 0 0 hm5C_site_59612 DeepMRMD:0;iRNA_m5C:0 59613 chr16 50664200 50664200 1 + C T SKCM 50664199 + 50664179 50664219 41 GGGTAAAGCTCACCGTGGCCCCCGATGGCAGCCAGAGCAAG GGGTAAAGCTCACCGTGGCCCTCGATGGCAGCCAGAGCAAG < 41bp 0.494675433127998 0.760353735244924 0.027597517 0.33928955 prediction 0.520707470489848 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50664199 chr16:50664200 nonsynonymous SNV 0.084 4 22 hm5C_associated_SNPs_106468 0 0 1 0 1 chromatin 0.500231643921061 0.500231643921194 0 2.66453525910038e-13 hm5C_site_59613 DeepMRMD:0;iRNA_m5C:2.66453525910038e-13 59614 chrX 117960386 117960386 1 + C A rs34318459 117960382 + 117960362 117960402 41 GGAGAGGTCAAGAGTGGCCCCTGGCGAATACAATGACTTCT GGAGAGGTCAAGAGTGGCCCCTGGAGAATACAATGACTTCT < 41bp 0.651915082641937 0.912260345199776 0.11938691 0.12504071 prediction 0.520690525115679 Functional Gain - ZCCHC12 ENSG00000174460 CDS Human protein_coding chrX:117960382 chrX:117960386 synonymous SNV . 0 25 hm5C_associated_SNPs_106469 0 0 1 0 0 exosome 0.50023164715872 0.500231643928279 0 0 hm5C_site_59614 DeepMRMD:0;iRNA_m5C:0 59615 chrX 69669255 69669255 1 + C T SKCM 69669254 + 69669234 69669274 41 TCGCAGGTGGCATCGACAATCCCCATGTCCCTGATGACCCT TCGCAGGTGGCATCGACAATCTCCATGTCCCTGATGACCCT < 41bp 0.531772337937339 0.792105328560957 0.16219983 0.9612843 prediction 0.520665981247236 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69669254 chrX:69669255 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_106470 0 0 0 0 2 Ribosome 0.500231645047019 0.500242316348029 0.9225686 2.13426020183594e-05 hm5C_site_59615 DeepMRMD:0.9225686;iRNA_m5C:2.13426020183594e-05 59616 chr10 43596062 43596062 1 + C T LUAD 43596061 + 43596041 43596081 41 CAGCATCTCTACGGCACGTACCGCACACGGCTGCATGAGAA CAGCATCTCTACGGCACGTACTGCACACGGCTGCATGAGAA < 41bp 0.500352206442527 0.76067621085369 0.12431294 0.18742931 prediction 0.520648008822326 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43596061 chr10:43596062 nonsynonymous SNV 0.006 3 22 hm5C_associated_SNPs_106471 0 0 0 0 0 Cytosol 0.500232129670383 0.50023240653283 0 5.53724894380991e-07 hm5C_site_59616 DeepMRMD:0;iRNA_m5C:5.53724894380991e-07 59617 chr14 22133982 22133982 1 + C G HNSC 22133978 + 22133958 22133998 41 TCCTGGTTTCTCTTCGAAAACACTCAGCTGAAGGGCGCCAG TCCTGGTTTCTCTTCGAAAACACTGAGCTGAAGGGCGCCAG < 41bp 0.485311307577594 0.76030797052245 0.05223894 0.11945522 prediction 0.520615941044901 Functional Gain - OR4E2 ENSG00000221977 CDS Human protein_coding chr14:22133978 chr14:22133982 stopgain 0.257 0 25 hm5C_associated_SNPs_106472 0 0 0 0 0 unknown 0.500231643921049 0.500231643921093 0 8.70414851306123e-14 hm5C_site_59617 DeepMRMD:0;iRNA_m5C:8.70414851306123e-14 59618 chr18 11851480 11851480 1 + C A rs16976750 11851476 + 11851456 11851496 41 TCTGCCTTCGGCGCGCTTCTCAGCCGGGCCGCCGACCCAAA TCTGCCTTCGGCGCGCTTCTCAGCAGGGCCGCCGACCCAAA < 41bp 0.551019218613208 0.811320097941986 0.908453 0.91342664 prediction 0.520601758657556 Functional Gain - CHMP1B ENSG00000267165 ncRNA_intronic Human antisense chr18:11851476 chr18:11851480 . . 0 25 hm5C_associated_SNPs_106473 0 0 1 0 0 Ribosome 0.500231643921095 0.500231643921092 0.00994728 0 hm5C_site_59618 DeepMRMD:0.00994728;iRNA_m5C:0 59619 chr6 138200116 138200116 1 + C G OV 138200115 + 138200095 138200135 41 CACGCCAGCCACGCCCCAGACCACACAAGGCACTTGGATCC CACGCCAGCCACGCCCCAGACGACACAAGGCACTTGGATCC < 41bp 0.44418413862513 0.760276835083779 0.06866372 0.07869801 prediction 0.520553670167558 Functional Gain - TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138200115 chr6:138200116 nonsynonymous SNV 0.020 0 22 hm5C_associated_SNPs_106474 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643905385 0 0 hm5C_site_59619 DeepMRMD:0;iRNA_m5C:0 59620 chr11 123894333 123894333 1 + T A LUSC 123894329 + 123894309 123894349 41 TCATCTTTGTGGACATTGGGCTAGTGGCCTCGGGCTGCTTT TCATCTTTGTGGACATTGGGCTAGAGGCCTCGGGCTGCTTT < 41bp 0.567796131267235 0.828070277106217 0.22937605 0.42562234 prediction 0.520548291677963 Functional Gain - OR10G9 ENSG00000236981 CDS Human protein_coding chr11:123894329 chr11:123894333 nonsynonymous SNV 0.504 4 25 hm5C_associated_SNPs_106475 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59620 DeepMRMD:0;iRNA_m5C:0 59621 chr8 126282910 126282910 1 + T G rs149307540 126282908 + 126282888 126282928 41 AGGTTGAGATGGGAGGATCGCTTGAGGCCGGCAATTCTGGG AGGTTGAGATGGGAGGATCGCTGGAGGCCGGCAATTCTGGG < 41bp 0.446810663686902 0.760270815284344 0.39512897 0.7793358 prediction 0.520541630568687 Functional Gain - NSMCE2 ENSG00000242170 ncRNA_exonic Human misc_RNA chr8:126282908 chr8:126282910 . . 0 23 hm5C_associated_SNPs_106476 0 0 1 0 0 Cytosol 0.500231643917651 0.500231635275243 0.5586716 0 hm5C_site_59621 DeepMRMD:0.5586716;iRNA_m5C:0 59622 chr19 57088680 57088680 1 + C G BLCA 57088679 + 57088659 57088699 41 GAATGTGGGAAAGCCTTCAGCCAGAATGCTCATCTTGTTCA GAATGTGGGAAAGCCTTCAGCGAGAATGCTCATCTTGTTCA < 41bp 0.459673954836086 0.760269120756786 0.2123028 0.4238534 prediction 0.520538241513572 Functional Gain - ZNF470 ENSG00000197016 CDS Human protein_coding chr19:57088679 chr19:57088680 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_106477 0 0 0 0 0 exosome 0.50023165977706 0.500232333454522 0 1.34735492429705e-06 hm5C_site_59622 DeepMRMD:0;iRNA_m5C:1.34735492429705e-06 59623 chr17 7916488 7916488 1 + C A rs140628227 7916484 + 7916464 7916504 41 GGAGCGCCGGGGAACGCTGGCCGGCGACGTCTTTAGCTTGG GGAGCGCCGGGGAACGCTGGCCGGAGACGTCTTTAGCTTGG < 41bp 0.361240088368811 0.760262990959056 0.88262266 0.90031266 prediction 0.520525981918112 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7916484 chr17:7916488 synonymous SNV . 0 25 hm5C_associated_SNPs_106478 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.03538 0 hm5C_site_59623 DeepMRMD:0.03538;iRNA_m5C:0 59624 chr22 41621037 41621037 1 + C A UCEC 41621033 + 41621013 41621053 41 ATGAAGCTGGAGGCCATTGACCCCCTGAATCTGGGCAACAT ATGAAGCTGGAGGCCATTGACCCCATGAATCTGGGCAACAT < 41bp 0.335644444996379 0.760251596225112 0.19624263 0.17124707 prediction 0.520503192450224 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41621033 chr22:41621037 nonsynonymous SNV 0.869 4 25 hm5C_associated_SNPs_106479 0 0 1 0 2 Ribosome 0.500231643921461 0.500231643921102 0 0 hm5C_site_59624 DeepMRMD:0;iRNA_m5C:0 59625 chr16 20796331 20796331 1 + T G UCEC 20796328 + 20796308 20796348 41 ATAAGTTTAAAAGCTTAAAGCACTGTGTGAGTGCTGGGGAA ATAAGTTTAAAAGCTTAAAGCACGGTGTGAGTGCTGGGGAA < 41bp 0.371087223217708 0.760230038657712 0.14391845 0.3496218 prediction 0.520460077315425 Functional Gain - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20796328 chr16:20796331 nonsynonymous SNV 0.997 4 24 hm5C_associated_SNPs_106480 0 0 1 0 2 Endoplasmic reticulum 0.500231646171587 0.500231558675539 0 0 hm5C_site_59625 DeepMRMD:0;iRNA_m5C:0 59626 chr19 48259787 48259787 1 + C G rs11538664 48259786 + 48259766 48259806 41 CTCCCTCTCTGTCCTGTAGCCCGAGGGCAACATCCTTCGAG CTCCCTCTCTGTCCTGTAGCCGGAGGGCAACATCCTTCGAG < 41bp 0.436235880780977 0.76022324053414 0.35573626 0.92182195 prediction 0.520446481068281 Functional Gain - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48259786 chr19:48259787 synonymous SNV . 0 22 hm5C_associated_SNPs_106481 0 0 1 0 2 unknown 0.500231643920966 0.500231643921092 0.8436439 2.53352894219461e-13 hm5C_site_59626 DeepMRMD:0.8436439;iRNA_m5C:2.53352894219461e-13 59627 chr3 32995445 32995445 1 + T G UCEC 32995442 + 32995422 32995462 41 CTTCCTGGCTTTCTGTTCAGCACTTGTTATACTGAGCGCAA CTTCCTGGCTTTCTGTTCAGCACGTGTTATACTGAGCGCAA < 41bp 0.360163818306416 0.760219589949042 0.058797956 0.18384042 prediction 0.520439179898084 Functional Gain - CCR4 ENSG00000183813 CDS Human protein_coding chr3:32995442 chr3:32995445 synonymous SNV . 0 24 hm5C_associated_SNPs_106482 0 0 0 0 0 exosome 0.5002315776361 0.50022707468141 0 0 hm5C_site_59627 DeepMRMD:0;iRNA_m5C:0 59628 chr11 55339704 55339704 1 + T G rs78612916 55339702 + 55339682 55339722 41 GTTATTTTTTTGCGTCTCTACTTGGGAACACTGTTGGGTAA GTTATTTTTTTGCGTCTCTACTGGGGAACACTGTTGGGTAA < 41bp 0.587356281332041 0.847568334398692 0.19709322 0.68692386 prediction 0.520424106133303 Functional Gain - OR4C16 ENSG00000181935 CDS Human other chr11:55339702 chr11:55339704 nonsynonymous SNV 0.023 3 23 hm5C_associated_SNPs_106483 0 0 0 0 0 unknown 0.500231643921433 0.500231643229143 0.37384772 0 hm5C_site_59628 DeepMRMD:0.37384772;iRNA_m5C:0 59629 chr12 52700002 52700002 1 + C G BRCA 52700001 + 52699981 52700021 41 GTACCAGGAGGTGATGAACTCCAAGCTGGGCCTGGACATCG GTACCAGGAGGTGATGAACTCGAAGCTGGGCCTGGACATCG < 41bp 0.442273578040041 0.760183351735291 0.35445178 0.9258223 prediction 0.520366703470582 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52700001 chr12:52700002 synonymous SNV . 0 22 hm5C_associated_SNPs_106484 0 0 0 0 1 nucleus 0.500231643689353 0.500231390044449 0.8516446 0 hm5C_site_59629 DeepMRMD:0.8516446;iRNA_m5C:0 59630 chr6 127471646 127471646 1 + T A STAD 127471642 + 127471622 127471662 41 GTAAAAGTGGATTTTACTTACACCTTGGAAAGTGCCTTGAC GTAAAAGTGGATTTTACTTACACCATGGAAAGTGCCTTGAC < 41bp 0.616307017235217 0.876488018676652 0.036896646 0.0407719 prediction 0.520362002882871 Functional Gain - RSPO3 ENSG00000146374 CDS Human protein_coding chr6:127471642 chr6:127471646 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_106485 0 0 0 0 2 exosome 0.500226369684312 0.500230860920309 0 8.9824719942122e-06 hm5C_site_59630 DeepMRMD:0;iRNA_m5C:8.9824719942122e-06 59631 chr1 33134689 33134689 1 + T C BLCA 33134687 + 33134667 33134707 41 ATGTTTCCTGGCATCTACTCCATGAGTCTCTGTTTGGGTCA ATGTTTCCTGGCATCTACTCCACGAGTCTCTGTTTGGGTCA < 41bp 0.548143169582428 0.808323832004919 0.104614705 0.36371738 prediction 0.520361324844982 Functional Gain - RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33134687 chr1:33134689 synonymous SNV . 0 23 hm5C_associated_SNPs_106486 0 0 1 0 1 Ribosome 0.500240320410158 0.500257362245395 0 3.40836704733061e-05 hm5C_site_59631 DeepMRMD:0;iRNA_m5C:3.40836704733061e-05 59632 chr1 1223363 1223363 1 + C A rs368294602 1223359 + 1223339 1223379 41 GAGCCCCTACGGCCACTGCACCGCCGGCGGGGAAGGCGTGG GAGCCCCTACGGCCACTGCACCGCAGGCGGGGAAGGCGTGG < 41bp 0.37100872742164 0.76017258709722 0.4163861 0.35750526 prediction 0.520345174194439 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1223359 chr1:1223363 synonymous SNV . 0 25 hm5C_associated_SNPs_106487 0 0 1 0 2 exosome 0.50023164452816 0.500231643922611 0 0 hm5C_site_59632 DeepMRMD:0;iRNA_m5C:0 59633 chr19 48185256 48185256 1 + C G rs575946170 48185255 + 48185235 48185275 41 GAGGAGCCAGCAGCCCCTCTCCGCAGAGGGCCCCCACCTCT GAGGAGCCAGCAGCCCCTCTCGGCAGAGGGCCCCCACCTCT < 41bp 0.596849142704696 0.857014088426869 0.52921 0.9166729 prediction 0.520329891444345 Functional Gain - BICRA ENSG00000063169 CDS Human protein_coding chr19:48185255 chr19:48185256 synonymous SNV . 0 22 hm5C_associated_SNPs_106488 0 0 0 0 1 unknown 0.500231643921314 0.500231643720011 0.7749258 0 hm5C_site_59633 DeepMRMD:0.7749258;iRNA_m5C:0 59634 chr11 63283152 63283152 1 + C A UCEC 63283148 + 63283128 63283168 41 GGGGCAGAAGAAACTGATCTCAGCCCCCTTCCTCTTTTACC GGGGCAGAAGAAACTGATCTCAGCACCCTTCCTCTTTTACC < 41bp 0.344469361507702 0.760156594291353 0.3443786 0.6042811 prediction 0.520313188582706 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63283148 chr11:63283152 synonymous SNV . 0 25 hm5C_associated_SNPs_106489 0 0 0 0 1 exosome 0.500231643921092 0.500231643921129 0.2085622 7.32747196252603e-14 hm5C_site_59634 DeepMRMD:0.2085622;iRNA_m5C:7.32747196252603e-14 59635 chr11 119025031 119025031 1 + C T HNSC 119025030 + 119025010 119025050 41 CCACGGGAGCTGAGGACCTTCCGCAAGATGTCCTGCTACAT CCACGGGAGCTGAGGACCTTCTGCAAGATGTCCTGCTACAT < 41bp 0.496186499484791 0.760151266560029 0.16302505 0.35656768 prediction 0.520302533120059 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025030 chr11:119025031 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_106490 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59635 DeepMRMD:0;iRNA_m5C:0 59636 chr16 85839515 85839515 1 + C G rs140124307 85839514 + 85839494 85839534 41 TGGGCGCCTGGACTGGGGCTCCAGCCTGCAGTGCCCATTGG TGGGCGCCTGGACTGGGGCTCGAGCCTGCAGTGCCCATTGG < 41bp 0.461087933713648 0.76015069247929 0.39170608 0.86597943 prediction 0.520301384958581 Functional Gain - COX4I1 ENSG00000131143 UTR3 Human protein_coding chr16:85839514 chr16:85839515 . . 0 22 hm5C_associated_SNPs_106491 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.73195886 0 hm5C_site_59636 DeepMRMD:0.73195886;iRNA_m5C:0 59637 chr2 119735455 119735455 1 + T A STAD 119735451 + 119735431 119735471 41 GCAGCAAAGGCGATGGGGGTCTCATTGGCCCAAAAGGGGAA GCAGCAAAGGCGATGGGGGTCTCAATGGCCCAAAAGGGGAA < 41bp 0.414815321646878 0.760147305045536 0.15565622 0.8108614 prediction 0.520294610091072 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735451 chr2:119735455 nonsynonymous SNV 0.026 1 25 hm5C_associated_SNPs_106492 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.6217228 0 hm5C_site_59637 DeepMRMD:0.6217228;iRNA_m5C:0 59638 chr16 69177169 69177169 1 + C G rs144266389 69177168 + 69177148 69177188 41 GTGGGGTGTCGCCTTCTTGTCCGATGGCACTATCATAAGTG GTGGGGTGTCGCCTTCTTGTCGGATGGCACTATCATAAGTG < 41bp 0.444307238961886 0.760144932597748 0.23320356 0.8551179 prediction 0.520289865195496 Functional Gain - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69177168 chr16:69177169 synonymous SNV . 0 22 hm5C_associated_SNPs_106493 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.7102358 0 hm5C_site_59638 DeepMRMD:0.7102358;iRNA_m5C:0 59639 chr1 165859539 165859539 1 + T C COAD 165859537 + 165859517 165859557 41 TGAGCCAGGATAGCTTCTACCGTGTCCTTACCTCGGAGCAG TGAGCCAGGATAGCTTCTACCGCGTCCTTACCTCGGAGCAG < 41bp 0.497722378661583 0.760132335870794 0.3395533 0.3234225 prediction 0.520264671741588 Functional Gain - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165859537 chr1:165859539 synonymous SNV . 0 23 hm5C_associated_SNPs_106494 0 0 1 0 2 Ribosome 0.500231643921154 0.500231643918421 0 0 hm5C_site_59639 DeepMRMD:0;iRNA_m5C:0 59640 chr1 111778692 111778692 1 + T C rs144428915 111778690 + 111778670 111778710 41 GTCCTTTGACTTCCATGGGTCTTGGGAAAAGCCCCTTATCA GTCCTTTGACTTCCATGGGTCTCGGGAAAAGCCCCTTATCA < 41bp 0.51286402290892 0.772987981749624 0.20679373 0.111742884 prediction 0.520247917681408 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111778690 chr1:111778692 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_106495 0 0 0 0 2 exosome 0.500231643921092 0.500231643916666 0 0 hm5C_site_59640 DeepMRMD:0;iRNA_m5C:0 59641 chr16 67672509 67672509 1 + C G rs117676849 67672505 + 67672485 67672525 41 GCAGAATGGCACCCAGACCACTGCCCACCAGTGACGGACAT GCAGAATGGCACCCAGACCACTGCGCACCAGTGACGGACAT < 41bp 0.492266063952008 0.760121654404492 0.06694335 0.054595858 prediction 0.520243308808984 Functional Gain - CTCF ENSG00000102974 UTR3 Human protein_coding chr16:67672505 chr16:67672509 . . 0 25 hm5C_associated_SNPs_106496 0 0 1 4 0 Nucleus 0.500231643927194 0.500232470684469 0 1.65351455061469e-06 hm5C_site_59641 DeepMRMD:0;iRNA_m5C:1.65351455061469e-06 59642 chr2 242758105 242758105 1 + C G HNSC 242758101 + 242758081 242758121 41 GCTCGGCTACACATGGGTATCCGCCTGAGCCAGTCCCCGCT GCTCGGCTACACATGGGTATCCGCGTGAGCCAGTCCCCGCT < 41bp 0.46615973090402 0.760117825265416 0.27905446 0.84648496 prediction 0.520235650530833 Functional Gain - NEU4 ENSG00000204099 CDS Human protein_coding chr2:242758101 chr2:242758105 nonsynonymous SNV 0.083 4 25 hm5C_associated_SNPs_106497 0 0 1 0 0 cytosol 0.500231620804812 0.500231649164719 0.69296992 5.67198132905844e-08 hm5C_site_59642 DeepMRMD:0.69296992;iRNA_m5C:5.67198132905844e-08 59643 chr19 32896716 32896716 1 + C G rs10405382 32896715 + 32896695 32896735 41 GCGGTTCTGCCCTCCTTGTACCCGCGGCGCGCTGCGGCCCG GCGGTTCTGCCCTCCTTGTACGCGCGGCGCGCTGCGGCCCG < 41bp 0.541326742321852 0.801443053824906 0.41024655 0.41743687 prediction 0.520232623006109 Functional Gain - DPY19L3 ENSG00000178904 UTR5 Human protein_coding chr19:32896715 chr19:32896716 . . 0 22 hm5C_associated_SNPs_106498 0 1 1 0 1 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59643 DeepMRMD:0;iRNA_m5C:0 59644 chr16 3254418 3254418 1 + C G rs61731432 3254417 + 3254397 3254437 41 ATAGACTCCTGCCTGCACACCCCCATGTACTTCTTCCTCAG ATAGACTCCTGCCTGCACACCGCCATGTACTTCTTCCTCAG < 41bp 0.581611405325296 0.841718079884734 0.026098013 0.24112916 prediction 0.520213349118877 Functional Gain - OR1F1 ENSG00000168124 CDS Human protein_coding chr16:3254417 chr16:3254418 nonsynonymous SNV 0.042 2 22 hm5C_associated_SNPs_106499 0 0 0 0 0 exosome 0.500231643921093 0.500231643948029 0 5.38731281807259e-11 hm5C_site_59644 DeepMRMD:0;iRNA_m5C:5.38731281807259e-11 59645 chr3 15089520 15089520 1 + T G rs189107315 15089517 + 15089497 15089537 41 AGAGCCAGGGCCTGGCCCAGCAGTAGTTGCTCATAGACCTG AGAGCCAGGGCCTGGCCCAGCAGGAGTTGCTCATAGACCTG < 41bp 0.602594362679772 0.862699282742086 0.5766398 0.9043342 prediction 0.520209840124628 Functional Gain - NR2C2 ENSG00000177463 intronic Human protein_coding chr3:15089517 chr3:15089520 . . 0 24 hm5C_associated_SNPs_106500 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921067 0.6553888 0 hm5C_site_59645 DeepMRMD:0.6553888;iRNA_m5C:0 59646 chr9 130579200 130579200 1 + C G rs41417551 130579199 + 130579179 130579219 41 CAGAGGCCTAGACTCCCACCCCACAGGGCGGTCCCGGGCAA CAGAGGCCTAGACTCCCACCCGACAGGGCGGTCCCGGGCAA < 41bp 0.571952893201988 0.832056040793872 0.12612587 0.31944877 prediction 0.520206295183769 Functional Gain - LOC102723566 ENSG00000225032 ncRNA_exonic Human antisense chr9:130579199 chr9:130579200 . . 0 22 hm5C_associated_SNPs_106501 0 0 1 0 0 unknown 0.50023154736079 0.500231643920293 0 1.93119006119957e-07 hm5C_site_59646 DeepMRMD:0;iRNA_m5C:1.93119006119957e-07 59647 chr1 236849931 236849931 1 + C G rs200003968 236849930 + 236849910 236849950 41 TTGCCAGTCAGCCCGTGCGTCCGAGCCCCTCGCGCCCCGCC TTGCCAGTCAGCCCGTGCGTCGGAGCCCCTCGCGCCCCGCC < 41bp 0.564456437518579 0.824544648277842 0.7913655 0.9165586 prediction 0.520176421518525 Functional Gain - ACTN2 ENSG00000077522 UTR5 Human protein_coding chr1:236849930 chr1:236849931 . . 0 22 hm5C_associated_SNPs_106502 0 0 0 0 0 chromatin 0.500231645471698 0.500231644419035 0.2503862 0 hm5C_site_59647 DeepMRMD:0.2503862;iRNA_m5C:0 59648 chr11 74876891 74876891 1 + C T SKCM 74876890 + 74876870 74876910 41 TGGCAGCCGGGTGCACCGACCCCGAATGATTGGCTATGGGG TGGCAGCCGGGTGCACCGACCTCGAATGATTGGCTATGGGG < 41bp 0.504267916398006 0.764355758040738 0.22470924 0.7621808 prediction 0.520175683285463 Functional Gain - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74876890 chr11:74876891 synonymous SNV . 0 22 hm5C_associated_SNPs_106503 0 0 1 0 1 cytosol 0.500231643914875 0.500231618334214 0.5243616 0 hm5C_site_59648 DeepMRMD:0.5243616;iRNA_m5C:0 59649 chr1 38265332 38265332 1 + T C COAD 38265330 + 38265310 38265350 41 ACGACTCATACCTGACGTCCCCTGAGGCCTGGGCCCACCTC ACGACTCATACCTGACGTCCCCCGAGGCCTGGGCCCACCTC < 41bp 0.500853274808246 0.760940645321131 0.15672004 0.11150339 prediction 0.520174741025769 Functional Gain - MANEAL ENSG00000185090 CDS Human protein_coding chr1:38265330 chr1:38265332 synonymous SNV . 0 23 hm5C_associated_SNPs_106504 0 0 1 0 1 Ribosome 0.500231643921092 0.500231644407564 0 9.72943281496441e-10 hm5C_site_59649 DeepMRMD:0;iRNA_m5C:9.72943281496441e-10 59650 chrX 100502129 100502129 1 + C T UCEC 100502128 + 100502108 100502148 41 TATCGCACTGCCATGAAACTCCGCAGAGTCCAGAAAGCCCT TATCGCACTGCCATGAAACTCTGCAGAGTCCAGAAAGCCCT < 41bp 0.497220216177396 0.760086529445422 0.3922645 0.37806168 prediction 0.520173058890843 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100502128 chrX:100502129 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_106505 0 0 0 0 2 nucleoplasm 0.500231643921094 0.500231643921092 0 0 hm5C_site_59650 DeepMRMD:0;iRNA_m5C:0 59651 chr12 551647 551647 1 + C A rs12317361 551643 + 551623 551663 41 ACCAGAGGGCGCTAGAGACTCAAACGAAATGTCCATCTGGA ACCAGAGGGCGCTAGAGACTCAAAAGAAATGTCCATCTGGA < 41bp 0.629187414396389 0.889266460537331 0.087082446 0.13995177 prediction 0.520158092281883 Functional Gain - CCDC77 ENSG00000120647 UTR3 Human protein_coding chr12:551643 chr12:551647 . . 0 25 hm5C_associated_SNPs_106506 0 0 0 0 0 cytosol 0.500231993527072 0.500231643934222 0 0 hm5C_site_59651 DeepMRMD:0;iRNA_m5C:0 59652 chr7 100470284 100470284 1 + T C UCEC 100470282 + 100470262 100470302 41 TGCTCAGTGTGCGGTGGGGCCATAATGCCTGAGCCAGGTCA TGCTCAGTGTGCGGTGGGGCCACAATGCCTGAGCCAGGTCA < 41bp 0.495712621445265 0.760077456518005 0.20294833 0.18680188 prediction 0.52015491303601 Functional Gain - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100470282 chr7:100470284 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_106507 0 0 1 0 2 Ribosome 0.500231643921191 0.500231643921457 0 5.33351141029925e-13 hm5C_site_59652 DeepMRMD:0;iRNA_m5C:5.33351141029925e-13 59653 chr1 238090337 238090337 1 + C G LUAD 238090336 + 238090316 238090356 41 GGCATCCTGACCCTGAAGTACCCCATTGAGCATGGCATCGT GGCATCCTGACCCTGAAGTACGCCATTGAGCATGGCATCGT < 41bp 0.581678936361049 0.841750804952703 0.015876472 0.18582883 prediction 0.520143737183309 Functional Gain - LOC100130331 ENSG00000237250;ENSG00000243781 ncRNA_exonic Human other chr1:238090336 chr1:238090337 . . 0 22 hm5C_associated_SNPs_106508 0 0 0 0 0 unknown 0.500231643921092 0.500231643921109 0 3.26405569239796e-14 hm5C_site_59653 DeepMRMD:0;iRNA_m5C:3.26405569239796e-14 59654 chr15 25488808 25488808 1 + T G LUSC 25488806 + 25488786 25488826 41 TTCCTGAAGAGAGGTGATGACTTAAAAATCATGCTCAATAG TTCCTGAAGAGAGGTGATGACTGAAAAATCATGCTCAATAG < 41bp 0.575943941917931 0.83600949157497 0.020050019 0.008639663 prediction 0.520131099314078 Functional Gain - SNORD115-40 ENSG00000272460 ncRNA_exonic Human snoRNA chr15:25488806 chr15:25488808 . . 0 23 hm5C_associated_SNPs_106509 0 0 0 0 0 unknown 0.500231643921199 0.500231643921117 0 0 hm5C_site_59654 DeepMRMD:0;iRNA_m5C:0 59655 chr8 91662190 91662190 1 + C G rs115631489 91662189 + 91662169 91662209 41 TGTTCTCTGGTGTCGTCTATCCAGGTTCAGTGTCTACCCTT TGTTCTCTGGTGTCGTCTATCGAGGTTCAGTGTCTACCCTT < 41bp 0.569588760418838 0.829636748685948 0.9435349 0.9626527 prediction 0.52009597653422 Functional Gain - TMEM64;NECAB1 ENSG00000246792 ncRNA_exonic Human antisense chr8:91662189 chr8:91662190 . . 0 22 hm5C_associated_SNPs_106510 0 0 0 0 0 unknown 0.500231643921638 0.500231643920443 0.0382356000000001 0 hm5C_site_59655 DeepMRMD:0.0382356000000001;iRNA_m5C:0 59656 chr9 139564106 139564106 1 + C G rs114826929 139564105 + 139564085 139564125 41 CAGCCCTGGGCTGGCCCCTGCCAGGCCTCGCTACGCGTGCT CAGCCCTGGGCTGGCCCCTGCGAGGCCTCGCTACGCGTGCT < 41bp 0.45320830443505 0.760047377333079 0.5012211 0.9081996 prediction 0.520094754666158 Functional Gain - EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139564105 chr9:139564106 synonymous SNV . 0 22 hm5C_associated_SNPs_106511 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.813957 0 hm5C_site_59656 DeepMRMD:0.813957;iRNA_m5C:0 59657 chr7 86415865 86415865 1 + C T UCEC 86415864 + 86415844 86415884 41 AAGGTGGGCCGCTCCAACATCCGCAAGTCCTACGACAGCGT AAGGTGGGCCGCTCCAACATCTGCAAGTCCTACGACAGCGT < 41bp 0.502125777777864 0.762166360589159 0.71414053 0.746126 prediction 0.520081165622591 Functional Gain - GRM3 ENSG00000198822 CDS Human protein_coding chr7:86415864 chr7:86415865 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_106512 0 0 0 0 0 Endoplasmic reticulum 0.500231633142317 0.500231996989458 0.0639709399999999 7.27694281721369e-07 hm5C_site_59657 DeepMRMD:0.0639709399999999;iRNA_m5C:7.27694281721369e-07 59658 chr9 124530806 124530806 1 + C T SKCM 124530805 + 124530785 124530825 41 TCCTGCTGGAGATCTCCAACCCCGAGACCCTCTCCAATACA TCCTGCTGGAGATCTCCAACCTCGAGACCCTCTCCAATACA < 41bp 0.527460859764136 0.787477775124814 0.19792122 0.9256507 prediction 0.520033830721356 Functional Gain - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124530805 chr9:124530806 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_106513 0 0 1 0 0 Ribosome 0.500231643909817 0.500231505819451 0.8513014 0 hm5C_site_59658 DeepMRMD:0.8513014;iRNA_m5C:0 59659 chr2 71894611 71894611 1 + C A STAD 71894607 + 71894587 71894627 41 TCCCGGAGCACGTGGAGTCACGGCCCCTCTACAGCCCCCTG TCCCGGAGCACGTGGAGTCACGGCACCTCTACAGCCCCCTG < 41bp 0.623980021682764 0.883990687785461 0.63184947 0.41594437 prediction 0.520021332205394 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71894607 chr2:71894611 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_106514 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921093 0 4.44089209850063e-16 hm5C_site_59659 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 59660 chr11 118869151 118869151 1 + C A rs34451365 118869147 + 118869127 118869167 41 CTCTCTGCGGCAGGTGGAGGCGGCCCGCAAGGCCATCCGCG CTCTCTGCGGCAGGTGGAGGCGGCACGCAAGGCCATCCGCG < 41bp 0.648636943964228 0.908645317947878 0.87074673 0.90185636 prediction 0.5200167479673 Functional Gain - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118869147 chr11:118869151 synonymous SNV . 0 25 hm5C_associated_SNPs_106515 0 0 1 0 1 Cytosol 0.500231643919582 0.50023164759395 0.06221926 7.34873606411668e-09 hm5C_site_59660 DeepMRMD:0.06221926;iRNA_m5C:7.34873606411668e-09 59661 chr16 30997777 30997777 1 + C A STAD 30997773 + 30997753 30997793 41 ACGTGATCGAGGCTTGTGTGCAGACCGGAACACGGTTCCTG ACGTGATCGAGGCTTGTGTGCAGAACGGAACACGGTTCCTG < 41bp 0.354563902010049 0.76000631427905 0.26933348 0.15033475 prediction 0.520012628558101 Functional Gain - HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30997773 chr16:30997777 nonsynonymous SNV 0.666 0 25 hm5C_associated_SNPs_106516 0 0 1 0 2 Ribosome 0.50023164482044 0.500231643918372 0 0 hm5C_site_59661 DeepMRMD:0;iRNA_m5C:0 59662 chr14 90923425 90923425 1 + C G rs1294529 90923424 + 90923404 90923444 41 CATCATAAAAAGATACATGGCCGGATATGATGTTCCTTCTG CATCATAAAAAGATACATGGCGGGATATGATGTTCCTTCTG < 41bp 0.544197963061767 0.804203828949049 0.33031583 0.69065785 prediction 0.520011731774564 Functional Gain - LINC00642 ENSG00000233208 ncRNA_exonic Human lincRNA chr14:90923424 chr14:90923425 . . 0 22 hm5C_associated_SNPs_106517 0 0 0 0 2 unknown 0.500231655186412 0.50023164393979 0.3813157 0 hm5C_site_59662 DeepMRMD:0.3813157;iRNA_m5C:0 59663 chr7 102715457 102715457 1 + C G rs7797786 102715456 + 102715436 102715476 41 GTGGGGCGCACCGTCCGACCCCCCCCTCCCGGTGTGCAGCG GTGGGGCGCACCGTCCGACCCGCCCCTCCCGGTGTGCAGCG < 41bp 0.528012765528638 0.788011250759904 0.038311332 0.048962027 prediction 0.519996970462532 Functional Gain - ARMC10 ENSG00000170632 UTR5 Human protein_coding chr7:102715456 chr7:102715457 . . 0 22 hm5C_associated_SNPs_106518 0 0 0 0 0 Ribosome 0.500231646444548 0.500231643921091 0 0 hm5C_site_59663 DeepMRMD:0;iRNA_m5C:0 59664 chr1 149858674 149858674 1 + C G COAD 149858670 + 149858650 149858690 41 GCGGGTGGGGGCCGGCGCGCCCGTCTACATGGCGGCGGTCC GCGGGTGGGGGCCGGCGCGCCCGTGTACATGGCGGCGGTCC < 41bp 0.520966064121835 0.780961122857688 0.19002965 0.13914397 prediction 0.519990117471707 Functional Gain - HIST2H2AC ENSG00000184260 CDS Human protein_coding chr1:149858670 chr1:149858674 synonymous SNV . 0 25 hm5C_associated_SNPs_106519 0 0 1 0 0 Ribosome 0.50023166777609 0.50023164392109 0 0 hm5C_site_59664 DeepMRMD:0;iRNA_m5C:0 59665 chr20 1918072 1918072 1 + C G STAD 1918068 + 1918048 1918088 41 ACACGGAGTATGCCAGCATTCAGACCAGCCCGCAGCCCGCG ACACGGAGTATGCCAGCATTCAGAGCAGCCCGCAGCCCGCG < 41bp 0.548749231562441 0.808741624996004 0.869882 0.92240417 prediction 0.519984786867125 Functional Gain - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1918068 chr20:1918072 nonsynonymous SNV 0.558 0 25 hm5C_associated_SNPs_106520 0 0 0 0 0 Nucleus 0.500231643921091 0.500231643921092 0.10504434 2.88657986402541e-15 hm5C_site_59665 DeepMRMD:0.10504434;iRNA_m5C:2.88657986402541e-15 59666 chr6 26446023 26446023 1 + C T CESC 26446022 + 26446002 26446042 41 CACTGGCTGGTACCCCCAACCCCAAATAAAGTGGAGCGACA CACTGGCTGGTACCCCCAACCTCAAATAAAGTGGAGCGACA < 41bp 0.501821574393087 0.76181106648508 0.2546994 0.90978664 prediction 0.519978984183986 Functional Gain - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26446022 chr6:26446023 synonymous SNV . 0 22 hm5C_associated_SNPs_106521 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.81957328 0 hm5C_site_59666 DeepMRMD:0.81957328;iRNA_m5C:0 59667 chr4 1206058 1206058 1 + C G rs532821312 1206057 + 1206037 1206077 41 GTCACTGGCGTGGTCTCTATCCGCCTCGGGCTTGACGGTTT GTCACTGGCGTGGTCTCTATCGGCCTCGGGCTTGACGGTTT < 41bp 0.58015270703307 0.840141381150025 0.6563176 0.9455934 prediction 0.519977348233909 Functional Gain - CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1206057 chr4:1206058 synonymous SNV . 0 22 hm5C_associated_SNPs_106522 0 0 0 0 0 Ribosome 0.500232152963348 0.500231643913839 0.5785516 0 hm5C_site_59667 DeepMRMD:0.5785516;iRNA_m5C:0 59668 chr1 17274918 17274918 1 + T G ACC 17274916 + 17274896 17274936 41 AGGCGCTGGAGCGAGCGGCCCGTGAGAAGGAGGCGCTAGCC AGGCGCTGGAGCGAGCGGCCCGGGAGAAGGAGGCGCTAGCC < 41bp 0.615516396925846 0.875497390493152 0.869354 0.9160073 prediction 0.519961987134611 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17274916 chr1:17274918 synonymous SNV . 0 23 hm5C_associated_SNPs_106523 0 0 0 0 1 chromatin 0.500231643921092 0.500231643938412 0.0933066 3.46405126805394e-11 hm5C_site_59668 DeepMRMD:0.0933066;iRNA_m5C:3.46405126805394e-11 59669 chr19 55087568 55087568 1 + T A LUAD 55087564 + 55087544 55087584 41 TCCCCAGTGACCCCCTGGAGCTCGTGGTCTCAGGTGAGGGC TCCCCAGTGACCCCCTGGAGCTCGAGGTCTCAGGTGAGGGC < 41bp 0.439312455593522 0.759978692068491 0.019898117 0.0656603 prediction 0.519957384136982 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55087564 chr19:55087568 nonsynonymous SNV 0.147 2 25 hm5C_associated_SNPs_106524 0 0 0 0 1 Cytosol 0.500231643871953 0.500231643906088 0 6.82696121856452e-11 hm5C_site_59669 DeepMRMD:0;iRNA_m5C:6.82696121856452e-11 59670 chr11 14276159 14276159 1 + T A BLCA 14276155 + 14276135 14276175 41 ACCATGATGGGCCCTAGTCCCGACTGGAACGTAGGCTTATC ACCATGATGGGCCCTAGTCCCGACAGGAACGTAGGCTTATC < 41bp 0.436096005157786 0.759977410146884 0.19103658 0.49694347 prediction 0.519954820293769 Functional Gain - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14276155 chr11:14276159 . 0.998 3 25 hm5C_associated_SNPs_106525 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_59670 DeepMRMD:0;iRNA_m5C:0 59671 chr4 41941219 41941219 1 + T C BLCA 41941217 + 41941197 41941237 41 CTCTGGTAATTTGCAGGTTGCATGAAGCAGCAAGCTTTTAC CTCTGGTAATTTGCAGGTTGCACGAAGCAGCAAGCTTTTAC < 41bp 0.491038932921147 0.759975875065996 0.32264125 0.1735627 prediction 0.519951750131992 Functional Gain - TMEM33 ENSG00000109133 CDS Human protein_coding chr4:41941217 chr4:41941219 synonymous SNV . 0 23 hm5C_associated_SNPs_106526 0 0 1 0 1 Ribosome 0.500231636969462 0.500231473393933 0 0 hm5C_site_59671 DeepMRMD:0;iRNA_m5C:0 59672 chr11 70281283 70281283 1 + C A rs200256430 70281279 + 70281259 70281299 41 GCGGCAGTAGGGCCCCCAGCCCCCCCCCGGAGCTGCGCCCT GCGGCAGTAGGGCCCCCAGCCCCCACCCGGAGCTGCGCCCT < 41bp 0.360380634826606 0.759966574472415 0.13966483 0.16200274 prediction 0.519933148944831 Functional Gain - CTTN ENSG00000085733 UTR3 Human protein_coding chr11:70281279 chr11:70281283 . . 0 25 hm5C_associated_SNPs_106527 0 0 1 0 0 Ribosome 0.500231643921197 0.500231643921092 0 0 hm5C_site_59672 DeepMRMD:0;iRNA_m5C:0 Multiple complex diseases 59673 chr22 28396607 28396607 1 + C A rs561461862 28396603 + 28396583 28396623 41 GGATGCTGCAAGTGGAGTGCCAGGCGGGTGCGGAGCCCTGT GGATGCTGCAAGTGGAGTGCCAGGAGGGTGCGGAGCCCTGT < 41bp 0.624520667510903 0.884481060897788 0.81693363 0.8580818 prediction 0.519920786773769 Functional Gain - TTC28-AS1 ENSG00000235954 ncRNA_exonic Human processed_transcript chr22:28396603 chr22:28396607 . . 0 25 hm5C_associated_SNPs_106528 0 0 0 0 0 unknown 0.500231644316717 0.500231652996237 0.0822963400000001 1.73590397611889e-08 hm5C_site_59673 DeepMRMD:0.0822963400000001;iRNA_m5C:1.73590397611889e-08 59674 chr14 21961062 21961062 1 + T A BLCA 21961058 + 21961038 21961078 41 GTCAGTGTTGCAGGCAGCAGCAGCTGCTGCTGCTGCTGCTT GTCAGTGTTGCAGGCAGCAGCAGCAGCTGCTGCTGCTGCTT < 41bp 0.605525408883724 0.86548267466605 0.74574924 0.76406014 prediction 0.519914531564652 Functional Gain - TOX4 ENSG00000092203 CDS Human protein_coding chr14:21961058 chr14:21961062 synonymous SNV . 0 25 hm5C_associated_SNPs_106529 0 0 1 0 0 Ribosome 0.500357640665477 0.500273935750465 0.0366218 0 hm5C_site_59674 DeepMRMD:0.0366218;iRNA_m5C:0 59675 chr6 35255546 35255546 1 + T C rs34368976 35255544 + 35255524 35255564 41 GCCGTACAGACAGAGGTGGGCTTGGAGGACCTGGCAGCAGA GCCGTACAGACAGAGGTGGGCTCGGAGGACCTGGCAGCAGA < 41bp 0.512481846293098 0.772432885008399 0.27286768 0.37489346 prediction 0.519902077430603 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35255544 chr6:35255546 nonsynonymous SNV 0.998 2 23 hm5C_associated_SNPs_106530 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643954847 0 6.75097755475917e-11 hm5C_site_59675 DeepMRMD:0;iRNA_m5C:6.75097755475917e-11 59676 chr12 52282078 52282078 1 + C G rs79384471 52282077 + 52282057 52282097 41 CCGCGGAGCCTGGGCTGTGCCCCGCGTTGACTGCCTCATAG CCGCGGAGCCTGGGCTGTGCCGCGCGTTGACTGCCTCATAG < 41bp 0.580687122248268 0.840632755091461 0.06258014 0.14529696 prediction 0.519891265686386 Functional Gain - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52282077 chr12:52282078 synonymous SNV . 0 22 hm5C_associated_SNPs_106531 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59676 DeepMRMD:0;iRNA_m5C:0 59677 chr16 22545276 22545276 1 + T C rs28582855 22545274 + 22545254 22545294 41 ATGATAATCTCAAGACACCTCCTGAGTGTCTGCTCACTCCC ATGATAATCTCAAGACACCTCCCGAGTGTCTGCTCACTCCC < 41bp 0.484624069869402 0.759928465526647 0.16733417 0.4134627 prediction 0.519856931053293 Functional Gain - NPIPB5 ENSG00000243716 CDS Human protein_coding chr16:22545274 chr16:22545276 synonymous SNV . 0 23 hm5C_associated_SNPs_106532 0 0 0 0 0 chromatin 0.500227099700145 0.500233918165938 0 1.36369315859586e-05 hm5C_site_59677 DeepMRMD:0;iRNA_m5C:1.36369315859586e-05 59678 chr13 79190249 79190249 1 + G T LIHC 79190253 - 79190233 79190273 41 GGATTCAATGATGTCAGAGTCAGACAACAGCAAGAGCCCTT GGATTCAATGATGTCAGAGTCAGAAAACAGCAAGAGCCCTT < 41bp 0.358085220609215 0.759927534594307 0.22755113 0.2043441 prediction 0.519855069188614 Functional Gain - RNF219 ENSG00000152193 CDS Human protein_coding chr13:79190253 chr13:79190249 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106533 0 0 1 0 0 Cytosol 0.500230626428741 0.500231639916018 0 2.0269745550916e-06 hm5C_site_59678 DeepMRMD:0;iRNA_m5C:2.0269745550916e-06 59679 chr20 57599165 57599165 1 + T A LIHC 57599161 + 57599141 57599181 41 CCACCTATGGGGATCTCAACCACCTAGTGTCCTTGACCATG CCACCTATGGGGATCTCAACCACCAAGTGTCCTTGACCATG < 41bp 0.612418477875588 0.872344356736288 0.17577055 0.10706353 prediction 0.5198517577214 Functional Gain - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57599161 chr20:57599165 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_106534 0 0 0 0 0 Cytosol 0.500231643923249 0.500231643921893 0 0 hm5C_site_59679 DeepMRMD:0;iRNA_m5C:0 59680 chrX 22056196 22056196 1 + C G rs750524981 22056195 + 22056175 22056215 41 TTGAGCATGTATCGGAATCACCTGGGGGGCTTGTTAAACCG TTGAGCATGTATCGGAATCACGTGGGGGGCTTGTTAAACCG < 41bp 0.461166517298007 0.759924772214322 0.30682072 0.39002812 prediction 0.519849544428643 Functional Gain - PHEX ENSG00000102174 UTR5 Human protein_coding chrX:22056195 chrX:22056196 . . 0 22 hm5C_associated_SNPs_106535 0 0 0 0 0 exosome 0.500231644456021 0.500230104581675 0 0 hm5C_site_59680 DeepMRMD:0;iRNA_m5C:0 59681 chr16 839599 839599 1 + C G rs540916853 839598 + 839578 839618 41 ACACGGGCCTCACCAGCTGCCCGCAATCCCGTCCTGAGGCG ACACGGGCCTCACCAGCTGCCGGCAATCCCGTCCTGAGGCG < 41bp 0.5686031877053 0.828527440353879 0.121193856 0.75931907 prediction 0.519848505297158 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:839598 chr16:839599 nonsynonymous SNV 0.013 2 22 hm5C_associated_SNPs_106536 0 0 1 0 0 Nucleus 0.500231643912993 0.500231643921093 0.51863814 1.61985980184909e-11 hm5C_site_59681 DeepMRMD:0.51863814;iRNA_m5C:1.61985980184909e-11 59682 chr8 98657041 98657041 1 + C G rs188271601 98657037 + 98657017 98657057 41 GTGCCGGCCGCGGCCCCCGACGACCTGGCCTTGCTGAAGAA GTGCCGGCCGCGGCCCCCGACGACGTGGCCTTGCTGAAGAA < 41bp 0.541966811639199 0.801888529286413 0.044894487 0.17563978 prediction 0.519843435294428 Functional Gain - MTDH ENSG00000147649 CDS Human protein_coding chr8:98657037 chr8:98657041 nonsynonymous SNV 0.112 0 25 hm5C_associated_SNPs_106537 0 0 1 0 1 Ribosome 0.500231643921051 0.50023164390627 0 0 hm5C_site_59682 DeepMRMD:0;iRNA_m5C:0 59683 chr22 29886906 29886906 1 + C G rs533220152 29886902 + 29886882 29886922 41 CCCTGCCCCCAGGCCCTCCCCAGGCGATGGACAATTATGAT CCCTGCCCCCAGGCCCTCCCCAGGGGATGGACAATTATGAT < 41bp 0.542001549237414 0.801892969916046 0.8961098 0.921368 prediction 0.519782841357265 Functional Gain - NEFH ENSG00000100285 UTR3 Human protein_coding chr22:29886902 chr22:29886906 . . 0 25 hm5C_associated_SNPs_106538 0 0 0 0 0 cytosol 0.500231643921054 0.500231643921092 0.0505164 7.61612994892857e-14 hm5C_site_59683 DeepMRMD:0.0505164;iRNA_m5C:7.61612994892857e-14 59684 chr10 47087498 47087498 1 + C A rs141186509 47087494 + 47087474 47087514 41 CTGGTCTGTTATGCACGCATCTACCGGCGCCTGCAGAGGCA CTGGTCTGTTATGCACGCATCTACAGGCGCCTGCAGAGGCA < 41bp 0.340866821771734 0.759889022171304 0.089580506 0.89455605 prediction 0.519778044342609 Functional Gain - NPY4R;NPY4R2 ENSG00000204174 CDS Human protein_coding chr10:47087494 chr10:47087498 synonymous SNV . 0 25 hm5C_associated_SNPs_106539 0 0 0 0 0 unknown 0.500231644634805 0.500231643911148 0.7891121 0 hm5C_site_59684 DeepMRMD:0.7891121;iRNA_m5C:0 59685 chr5 43653235 43653235 1 + C A UCEC 43653231 + 43653211 43653251 41 TGATTGGGGTTGCTGGAGGACTGGCAGCCACCCTCGGAGTC TGATTGGGGTTGCTGGAGGACTGGAAGCCACCCTCGGAGTC < 41bp 0.665705716733868 0.925594195836655 0.7609187 0.603647 prediction 0.519776958205574 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43653231 chr5:43653235 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_106540 0 0 1 0 1 Endoplasmic reticulum 0.500231643921444 0.500231643921093 0 0 hm5C_site_59685 DeepMRMD:0;iRNA_m5C:0 59686 chr19 17323266 17323266 1 + T A rs533395902 17323262 + 17323242 17323282 41 CGTGAGGTGGGCACCGGCCCCAAGTGCAGAGTCAAGGCAGG CGTGAGGTGGGCACCGGCCCCAAGAGCAGAGTCAAGGCAGG < 41bp 0.518589499335518 0.778476420919644 0.458754 0.3640074 prediction 0.519773843168251 Functional Gain - MYO9B ENSG00000099331 UTR3 Human protein_coding chr19:17323262 chr19:17323266 . . 0 25 hm5C_associated_SNPs_106541 0 0 0 0 0 Nucleus 0.500231643921093 0.500231643921093 0 0 hm5C_site_59686 DeepMRMD:0;iRNA_m5C:0 59687 chr7 39606101 39606101 1 + C G HNSC 39606097 + 39606077 39606117 41 TGACGAAGAAGCAGACGAGTCGCTCCTGGCGCAGCGGGAAT TGACGAAGAAGCAGACGAGTCGCTGCTGGCGCAGCGGGAAT < 41bp 0.512860169554645 0.772744191618326 0.1801956 0.1456356 prediction 0.519768044127361 Functional Gain - YAE1D1 ENSG00000241127 CDS Human protein_coding chr7:39606097 chr7:39606101 synonymous SNV . 0 25 hm5C_associated_SNPs_106542 0 0 1 0 1 Ribosome 0.500229004903051 0.500231688679982 0 5.36755386226773e-06 hm5C_site_59687 DeepMRMD:0;iRNA_m5C:5.36755386226773e-06 59688 chr17 4926964 4926964 1 + C G KIRC 4926960 + 4926940 4926980 41 CGTGGTCGTCTTCGCTGGCTCAAGCAGGAGCAGCTACGGCT CGTGGTCGTCTTCGCTGGCTCAAGGAGGAGCAGCTACGGCT < 41bp 0.485430744143293 0.759881686217201 0.6761012 0.9070448 prediction 0.519763372434402 Functional Gain - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926960 chr17:4926964 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106543 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921093 0.4618872 4.44089209850063e-16 hm5C_site_59688 DeepMRMD:0.4618872;iRNA_m5C:4.44089209850063e-16 59689 chr2 175289314 175289314 1 + T C rs17255817 175289312 + 175289292 175289332 41 AAAAGAAATCACATTTTAAGCCTGACAGAAGACACCCACTC AAAAGAAATCACATTTTAAGCCCGACAGAAGACACCCACTC < 41bp 0.488709635511139 0.759879107297636 0.0072004795 0.009863704 prediction 0.519758214595272 Functional Gain - SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175289312 chr2:175289314 synonymous SNV . 0 23 hm5C_associated_SNPs_106544 0 0 1 0 1 exosome 0.50023164384756 0.500231643921092 0 1.47063916600132e-10 hm5C_site_59689 DeepMRMD:0;iRNA_m5C:1.47063916600132e-10 59690 chr1 210016932 210016932 1 + C G LGG 210016931 + 210016911 210016951 41 AAGGAGGAATTGAATTTTACCCACATCTGCGAGTACACGCA AAGGAGGAATTGAATTTTACCGACATCTGCGAGTACACGCA < 41bp 0.467148108930611 0.759878388630528 0.09346777 0.34957424 prediction 0.519756777261055 Functional Gain - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210016931 chr1:210016932 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_106545 0 0 0 0 0 Cytosol 0.500231874801437 0.500231643957164 0 0 hm5C_site_59690 DeepMRMD:0;iRNA_m5C:0 59691 chr7 149578890 149578890 1 + C A rs114339336 149578886 + 149578866 149578906 41 GGTTGCAGGTAGCCGGAAGACAACCAGGTGAGTGTCACTCA GGTTGCAGGTAGCCGGAAGACAACAAGGTGAGTGTCACTCA < 41bp 0.629582006758326 0.889457436192726 0.2765746 0.32732037 prediction 0.5197508588688 Functional Gain - ACTR3C ENSG00000273293 upstream Human lincRNA chr7:149578886 chr7:149578890 . . 0 25 hm5C_associated_SNPs_106546 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_59691 DeepMRMD:0;iRNA_m5C:0 59692 chr20 53267111 53267111 1 + C G rs2023454 53267107 + 53267087 53267127 41 AATGACAGCAAGGGAAATGACGACCAAGAGAAGAAGCTTAA AATGACAGCAAGGGAAATGACGACGAAGAGAAGAAGCTTAA < 41bp 0.531642769048263 0.791515011897803 0.15532655 0.29430723 prediction 0.519744485699081 Functional Gain - DOK5 ENSG00000101134 UTR3 Human protein_coding chr20:53267107 chr20:53267111 . . 0 25 hm5C_associated_SNPs_106547 0 1 0 0 0 exosome 0.500231643921092 0.500231643921481 0 7.76934072632685e-13 hm5C_site_59692 DeepMRMD:0;iRNA_m5C:7.76934072632685e-13 59693 chr1 110882083 110882083 1 + C G BLCA 110882079 + 110882059 110882099 41 GGCGGAGTCCAAGATGGCGGCGTGCGGTTCCGCTGTGTGAA GGCGGAGTCCAAGATGGCGGCGTGGGGTTCCGCTGTGTGAA < 41bp 0.491570023264306 0.759869040267962 0.20924339 0.43124586 prediction 0.519738080535924 Functional Gain - RBM15 ENSG00000162775 CDS Human protein_coding chr1:110882079 chr1:110882083 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_106548 0 0 1 0 0 Nucleus 0.500231643906573 0.500231643909264 0 5.38102895575321e-12 hm5C_site_59693 DeepMRMD:0;iRNA_m5C:5.38102895575321e-12 59694 chr7 891069 891069 1 + C A STAD 891065 + 891045 891085 41 GCAGGATCGGAGCTGTGGGCCAGGCTGTGTCCAGGACGGCG GCAGGATCGGAGCTGTGGGCCAGGATGTGTCCAGGACGGCG < 41bp 0.633756198420517 0.893613511717002 0.29020894 0.37519455 prediction 0.519714626592972 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:891065 chr7:891069 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106549 0 0 1 0 2 Endoplasmic reticulum 0.500231643919242 0.500202753976209 0 0 hm5C_site_59694 DeepMRMD:0;iRNA_m5C:0 59695 chr19 56372857 56372857 1 + C A LIHC 56372853 + 56372833 56372873 41 GGACAGCACCCTCAGCGAGTCGACCTTTGTGACCTGGTGTA GGACAGCACCCTCAGCGAGTCGACATTTGTGACCTGGTGTA < 41bp 0.345672483591502 0.759854911057699 0.0302715 0.1697424 prediction 0.519709822115398 Functional Gain - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56372853 chr19:56372857 synonymous SNV . 0 25 hm5C_associated_SNPs_106550 0 0 0 0 1 exosome 0.500231643936143 0.500231643858764 0 0 hm5C_site_59695 DeepMRMD:0;iRNA_m5C:0 59696 chr19 20044841 20044841 1 + T C LUAD 20044839 + 20044819 20044859 41 CATCCTCAACCCTTAGTAGACATGAGTTCATTCATATGGGA CATCCTCAACCCTTAGTAGACACGAGTTCATTCATATGGGA < 41bp 0.492027310510222 0.75982954445285 0.22965074 0.21607977 prediction 0.5196590889057 Functional Gain - ZNF93 ENSG00000184635 CDS Human protein_coding chr19:20044839 chr19:20044841 synonymous SNV . 0 23 hm5C_associated_SNPs_106551 0 0 0 0 0 Cytosol 0.500231648646627 0.500231645629723 0 0 hm5C_site_59696 DeepMRMD:0;iRNA_m5C:0 59697 chr21 45993672 45993672 1 + C A OV 45993668 + 45993648 45993688 41 TCCAGCGACCTGAGCTACAGCAGCCGCGTCTGCCTTCCTGG TCCAGCGACCTGAGCTACAGCAGCAGCGTCTGCCTTCCTGG < 41bp 0.630315828847154 0.890143313933103 0.4802791 0.46097913 prediction 0.519654970171898 Functional Gain - KRTAP10-4 ENSG00000215454 CDS Human protein_coding chr21:45993668 chr21:45993672 nonsynonymous SNV 0.099 0 25 hm5C_associated_SNPs_106552 0 0 0 0 0 unknown 0.500231643886107 0.500231591177087 0 0 hm5C_site_59697 DeepMRMD:0;iRNA_m5C:0 59698 chrX 89177719 89177719 1 + C A LUSC 89177715 + 89177695 89177735 41 AACTTGTGTCTCCAGAGGAGCACGCCGACTTCAGCAGCTTC AACTTGTGTCTCCAGAGGAGCACGACGACTTCAGCAGCTTC < 41bp 0.370689531507917 0.759816918557215 0.44156155 0.42946854 prediction 0.51963383711443 Functional Gain - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177715 chrX:89177719 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106553 0 0 0 0 0 exosome 0.500231644966134 0.500231643919438 0 0 hm5C_site_59698 DeepMRMD:0;iRNA_m5C:0 59699 chr10 134788871 134788871 1 + T A UCEC 134788867 + 134788847 134788887 41 CCTCGGCCATGTCTGCGGCGCACGTCCCCGGTGCACATCCC CCTCGGCCATGTCTGCGGCGCACGACCCCGGTGCACATCCC < 41bp 0.513054677437414 0.772869450505313 0.23151907 0.150403 prediction 0.5196295461358 Functional Gain - LINC01168 ENSG00000240707 ncRNA_exonic Human lincRNA chr10:134788867 chr10:134788871 . . 0 25 hm5C_associated_SNPs_106554 0 0 0 0 0 unknown 0.500231723901581 0.500236134738122 0 8.82167308091653e-06 hm5C_site_59699 DeepMRMD:0;iRNA_m5C:8.82167308091653e-06 59700 chr17 76203060 76203060 1 + T G BLCA 76203058 + 76203038 76203078 41 CTGGTCCACGTGCATCCCACCTTGGGAAGCCTCTCCAAAGA CTGGTCCACGTGCATCCCACCTGGGGAAGCCTCTCCAAAGA < 41bp 0.61190097296684 0.871714529838833 0.093838036 0.7235879 prediction 0.519627113743987 Functional Gain - AFMID ENSG00000183077 CDS Human protein_coding chr17:76203058 chr17:76203060 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_106555 0 0 1 0 1 Nucleus 0.500231643921274 0.500231644047947 0.4471758 2.53347565148943e-10 hm5C_site_59700 DeepMRMD:0.4471758;iRNA_m5C:2.53347565148943e-10 59701 chr12 20522996 20522996 1 + C A STAD 20522992 + 20522972 20523012 41 GCCAGGTACGTGGAACAAATCTTGCCGCAGTCCGCGGAGGC GCCAGGTACGTGGAACAAATCTTGACGCAGTCCGCGGAGGC < 41bp 0.362960568695062 0.759810901781524 0.39429742 0.41836846 prediction 0.519621803563047 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20522992 chr12:20522996 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106556 0 0 0 0 0 Nucleus 0.500231643921075 0.500231643921138 0 1.26787469412193e-13 hm5C_site_59701 DeepMRMD:0;iRNA_m5C:1.26787469412193e-13 59702 chr22 39439011 39439011 1 + T G PRAD 39439009 + 39438989 39439029 41 ATAATAGACCCATCCTTTCTCGTCGGAATACCGTCTGGCTG ATAATAGACCCATCCTTTCTCGGCGGAATACCGTCTGGCTG < 41bp 0.418406715704288 0.75980868415455 0.8256685 0.9589319 prediction 0.5196173683091 Functional Gain - APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39439009 chr22:39439011 synonymous SNV . 0 23 hm5C_associated_SNPs_106557 0 0 1 0 2 Nucleus 0.500231663808819 0.50023164392119 0.2665268 0 hm5C_site_59702 DeepMRMD:0.2665268;iRNA_m5C:0 59703 chr20 1286156 1286156 1 + C G LUSC 1286155 + 1286135 1286175 41 TGCATGCAGGAGCGTGCCATCCAGACAGACTTCGTGCAGTA TGCATGCAGGAGCGTGCCATCGAGACAGACTTCGTGCAGTA < 41bp 0.59017455922083 0.849982314813124 0.24659646 0.86412275 prediction 0.519615511184589 Functional Gain - SNPH ENSG00000101298 CDS Human protein_coding chr20:1286155 chr20:1286156 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_106558 0 0 0 0 0 Endoplasmic reticulum 0.500231656361797 0.500231652810861 0.7282455 0 hm5C_site_59703 DeepMRMD:0.7282455;iRNA_m5C:0 59704 chr15 24922245 24922245 1 + C A LUSC 24922241 + 24922221 24922261 41 CAACCTGTGCAGACCACAGACTCCCTGCCCCTGACCACTTA CAACCTGTGCAGACCACAGACTCCATGCCCCTGACCACTTA < 41bp 0.350611753869309 0.759804313392874 0.03167051 0.9735096 prediction 0.519608626785748 Functional Gain - NPAP1 ENSG00000185823 CDS Human protein_coding chr15:24922241 chr15:24922245 nonsynonymous SNV 0.012 2 25 hm5C_associated_SNPs_106559 0 0 0 0 0 Nucleus 0.500231643920928 0.500231641904676 0.9470192 0 hm5C_site_59704 DeepMRMD:0.9470192;iRNA_m5C:0 59705 chr12 29423406 29423406 1 + T G STAD 29423403 + 29423383 29423423 41 ATGTCCACAATTGCAGCTTTCTATGGCGGCAAGTCCATTCT ATGTCCACAATTGCAGCTTTCTAGGGCGGCAAGTCCATTCT < 41bp 0.37542956283773 0.759788147191529 0.070346504 0.55432206 prediction 0.519576294383057 Functional Gain - FAR2 ENSG00000064763 CDS Human protein_coding chr12:29423403 chr12:29423406 stopgain 0.921 1 24 hm5C_associated_SNPs_106560 0 0 0 0 1 Cytosol 0.50023164393038 0.500231643921081 0.10864412 0 hm5C_site_59705 DeepMRMD:0.10864412;iRNA_m5C:0 59706 chr13 42877901 42877901 1 + C A rs201525107 42877897 + 42877877 42877917 41 GCTGAGCAGTACCAGCCTGGCAGCCGACAGTGGGATCGGAC GCTGAGCAGTACCAGCCTGGCAGCAGACAGTGGGATCGGAC < 41bp 0.367745264637382 0.759774534847466 0.387402 0.27145532 prediction 0.519549069694931 Functional Gain - AKAP11 ENSG00000023516 CDS Human protein_coding chr13:42877897 chr13:42877901 synonymous SNV . 0 25 hm5C_associated_SNPs_106561 0 0 1 0 1 Nucleus 0.500229606647979 0.500231171486486 0 3.1296770128808e-06 hm5C_site_59706 DeepMRMD:0;iRNA_m5C:3.1296770128808e-06 59707 chr16 70176252 70176252 1 + T C SKCM 70176250 + 70176230 70176270 41 GAGCCAGGTGGATGGAGAAACATGGATTTGAGAGGCCAAAG GAGCCAGGTGGATGGAGAAACACGGATTTGAGAGGCCAAAG < 41bp 0.513352786360004 0.773126407383924 0.27393538 0.33761495 prediction 0.519547242047838 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70176250 chr16:70176252 synonymous SNV . 0 23 hm5C_associated_SNPs_106562 0 0 1 0 0 Nucleus 0.500231643915688 0.500231643921659 0 1.19424470312879e-11 hm5C_site_59707 DeepMRMD:0;iRNA_m5C:1.19424470312879e-11 59708 chr1 161187847 161187847 1 + C A UCEC 161187843 + 161187823 161187863 41 TTTCTGTATGGAATTGTCCTCACCCTCCTCTACTGTCGACT TTTCTGTATGGAATTGTCCTCACCATCCTCTACTGTCGACT < 41bp 0.342439960233336 0.759771591985224 0.008204579 0.01868704 prediction 0.519543183970447 Functional Gain - FCER1G ENSG00000158869 CDS Human protein_coding chr1:161187843 chr1:161187847 nonsynonymous SNV 0.999 2 25 hm5C_associated_SNPs_106563 0 0 0 0 2 Endoplasmic reticulum 0.500231645942268 0.500231720577165 0 1.49269793858764e-07 hm5C_site_59708 DeepMRMD:0;iRNA_m5C:1.49269793858764e-07 59709 chr17 36912206 36912206 1 + C G UCEC 36912205 + 36912185 36912225 41 CGGCAGATCAAACCTTATACCCTCATGAGCATGGTGGCCAA CGGCAGATCAAACCTTATACCGTCATGAGCATGGTGGCCAA < 41bp 0.581956201950209 0.841726843010549 0.053315997 0.16361412 prediction 0.51954128212068 Functional Gain - PSMB3 ENSG00000108294 CDS Human other chr17:36912205 chr17:36912206 nonsynonymous SNV 0.987 1 22 hm5C_associated_SNPs_106564 0 0 1 0 2 Ribosome 0.500231645223706 0.500230684655236 0 0 hm5C_site_59709 DeepMRMD:0;iRNA_m5C:0 59710 chr11 113650928 113650928 1 + C A LGG 113650924 + 113650904 113650944 41 TTCAGCCACTACCCTCCTTCCAGTCTCCTGGGTGGCCCATG TTCAGCCACTACCCTCCTTCCAGTATCCTGGGTGGCCCATG < 41bp 0.365805756495158 0.759745151428162 0.26417133 0.3129208 prediction 0.519490302856325 Functional Gain - CLDN25 ENSG00000228607 CDS Human protein_coding chr11:113650924 chr11:113650928 synonymous SNV . 0 25 hm5C_associated_SNPs_106565 0 0 0 0 0 unknown 0.500231643921191 0.500231643921092 0 0 hm5C_site_59710 DeepMRMD:0;iRNA_m5C:0 59711 chr19 30313009 30313009 1 + C T SKCM 30313008 + 30312988 30313028 41 AAGTGCTACTGCCGCAGTATCCCCAGCAAATCTTTATACAG AAGTGCTACTGCCGCAGTATCTCCAGCAAATCTTTATACAG < 41bp 0.526334190802296 0.786076474303013 0.051812053 0.94261456 prediction 0.519484567001434 Functional Gain - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313008 chr19:30313009 nonsynonymous SNV 0.986 3 22 hm5C_associated_SNPs_106566 0 0 1 0 1 Ribosome 0.500234943025954 0.500231838117255 0.88522912 0 hm5C_site_59711 DeepMRMD:0.88522912;iRNA_m5C:0 59712 chr19 50436081 50436081 1 + C A LGG 50436077 + 50436057 50436097 41 CCCCTCCTCCTTCTCCACCTCAACCTTCTCGCCTGGCCCCC CCCCTCCTCCTTCTCCACCTCAACATTCTCGCCTGGCCCCC < 41bp 0.348822427602406 0.759729907065102 0.03988871 0.06730428 prediction 0.519459814130205 Functional Gain - ATF5 ENSG00000169136 CDS Human protein_coding chr19:50436077 chr19:50436081 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_106567 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59712 DeepMRMD:0;iRNA_m5C:0 59713 chr13 114149919 114149919 1 + T G HNSC 114149917 + 114149897 114149937 41 ATGAAGGTGTTGGGAAGAAGCTTCTTCTGGGTGCTGTTTCC ATGAAGGTGTTGGGAAGAAGCTGCTTCTGGGTGCTGTTTCC < 41bp 0.421874315114327 0.759727362388445 0.31781134 0.3773167 prediction 0.51945472477689 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114149917 chr13:114149919 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_106568 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_59713 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 59714 chr12 53837259 53837259 1 + C A UCEC 53837255 + 53837235 53837275 41 CCCACCCACCACCTATTAATCCACCCTTTCCCCCAGGCCCC CCCACCCACCACCTATTAATCCACACTTTCCCCCAGGCCCC < 41bp 0.353736200607224 0.75970359675545 0.23936188 0.12977937 prediction 0.5194071935109 Functional Gain - PRR13 ENSG00000205352 CDS Human protein_coding chr12:53837255 chr12:53837259 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_106569 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643920806 0 0 hm5C_site_59714 DeepMRMD:0;iRNA_m5C:0 59715 chr17 73489851 73489851 1 + T C STAD 73489849 + 73489829 73489869 41 TCTGCCTTCGCCTACAAGCCCATGAACTGCGCCCTGTCCTC TCTGCCTTCGCCTACAAGCCCACGAACTGCGCCCTGTCCTC < 41bp 0.485948912233192 0.759701032027864 0.16919395 0.26990575 prediction 0.519402064055728 Functional Gain - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73489849 chr17:73489851 nonsynonymous SNV 0.996 5 23 hm5C_associated_SNPs_106570 0 0 0 0 1 Cytosol 0.500231643920514 0.500231643920278 0 0 hm5C_site_59715 DeepMRMD:0;iRNA_m5C:0 59716 chr15 74573116 74573116 1 + C A LUSC 74573112 + 74573092 74573132 41 CTGACAGGGAAAGGCTTGGACGGGCTTCACGTGGAGCGGCT CTGACAGGGAAAGGCTTGGACGGGATTCACGTGGAGCGGCT < 41bp 0.657500129445144 0.917195861946541 0.84727293 0.8462416 prediction 0.519391465002794 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74573112 chr15:74573116 nonsynonymous SNV 0.017 3 25 hm5C_associated_SNPs_106571 0 0 0 0 1 exosome 0.500231643897031 0.500231643921092 0 4.81230610915873e-11 hm5C_site_59716 DeepMRMD:0;iRNA_m5C:4.81230610915873e-11 59717 chr11 1078666 1078666 1 + C G rs531204958 1078662 + 1078642 1078682 41 AACTGGAGGACCGCCACGCTCTGCCGTAAGCCCCGGCGCCT AACTGGAGGACCGCCACGCTCTGCGGTAAGCCCCGGCGCCT < 41bp 0.528049879797813 0.787736153431829 0.7379154 0.8776417 prediction 0.519372547268032 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1078662 chr11:1078666 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_106572 0 0 0 0 1 Endoplasmic reticulum 0.500230455356407 0.500231643118508 0.2794526 2.37552420179199e-06 hm5C_site_59717 DeepMRMD:0.2794526;iRNA_m5C:2.37552420179199e-06 59718 chr8 105361774 105361774 1 + C A LUSC 105361770 + 105361750 105361790 41 GTGAGCAAGCAGTTTCAAAGCTTGCCAGGGTTTGAGGTTCA GTGAGCAAGCAGTTTCAAAGCTTGACAGGGTTTGAGGTTCA < 41bp 0.347231402240463 0.759680336143117 0.12324667 0.108609855 prediction 0.519360672286234 Functional Gain - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361770 chr8:105361774 nonsynonymous SNV 0.907 4 25 hm5C_associated_SNPs_106573 0 0 0 0 1 exosome 0.500231643985471 0.50023164392149 0 0 hm5C_site_59718 DeepMRMD:0;iRNA_m5C:0 59719 chr12 124239052 124239052 1 + T G CESC 124239050 + 124239030 124239070 41 ATCTCCAACACCGCCTCCTACCTGAGGCTCTGGGCGCTTAG ATCTCCAACACCGCCTCCTACCGGAGGCTCTGGGCGCTTAG < 41bp 0.407932320266474 0.759677562230143 0.58057404 0.94714844 prediction 0.519355124460286 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239050 chr12:124239052 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_106574 0 0 1 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.7331488 0 hm5C_site_59719 DeepMRMD:0.7331488;iRNA_m5C:0 59720 chr18 8831778 8831778 1 + C A MESO 8831777 + 8831757 8831797 41 GCATGGTGGCGAGGAGCCGCCCGAGGAGCAGCCACACCGAG GCATGGTGGCGAGGAGCCGCCAGAGGAGCAGCCACACCGAG < 41bp 0.506392179810064 0.766065222935984 0.40863058 0.9118004 prediction 0.51934608625184 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8831777 chr18:8831778 synonymous SNV . 0 22 hm5C_associated_SNPs_106575 0 0 0 0 0 Nucleus 0.500231643921132 0.500231643921095 0.8236008 0 hm5C_site_59720 DeepMRMD:0.8236008;iRNA_m5C:0 59721 chrX 49103973 49103973 1 + C A rs183877705 49103969 + 49103949 49103989 41 CCCCTTAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGAT CCCCTTAGGAGCCCCAGGCCCAGGACACTCAGGTGTCAGAT < 41bp 0.654289996910209 0.913953393908134 0.75557244 0.9204824 prediction 0.519326793995852 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103969 chrX:49103973 nonsynonymous SNV 0.930 1 25 hm5C_associated_SNPs_106576 1 0 0 0 2 Cytosol 0.500231643921101 0.500231643922796 0.32981992 3.39062111720523e-12 hm5C_site_59721 DeepMRMD:0.32981992;iRNA_m5C:3.39062111720523e-12 not specified not specified 59722 chr21 46643323 46643323 1 + C G rs576523530 46643319 + 46643299 46643339 41 GGCCCCACGACAGAGGGAGTCAGCCCGGGAGGTCAGGAGCG GGCCCCACGACAGAGGGAGTCAGCGCGGGAGGTCAGGAGCG < 41bp 0.550477992252289 0.810135187134425 0.86192465 0.9003719 prediction 0.519314389764271 Functional Gain - ADARB1 ENSG00000197381 UTR3 Human protein_coding chr21:46643319 chr21:46643323 . . 0 25 hm5C_associated_SNPs_106577 0 0 1 0 0 Nucleus 0.500231643920642 0.500231642435712 0.0768945000000001 0 hm5C_site_59722 DeepMRMD:0.0768945000000001;iRNA_m5C:0 59723 chr19 21216970 21216970 1 + C A rs144051683 21216966 + 21216946 21216986 41 AGCCCTGGAATATGAAGAGACATGCGATGGTAGATCAACCC AGCCCTGGAATATGAAGAGACATGAGATGGTAGATCAACCC < 41bp 0.364928033932303 0.759641048154565 0.065063745 0.2132256 prediction 0.51928209630913 Functional Gain - ZNF430 ENSG00000118620 CDS Human protein_coding chr19:21216966 chr19:21216970 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106578 0 0 1 0 3 Nucleus 0.500231643921054 0.500231643917129 0 0 hm5C_site_59723 DeepMRMD:0;iRNA_m5C:0 59724 chr2 186603429 186603429 1 + G C rs193095579 186603433 - 186603413 186603453 41 CTCCTGAGGGGCGGCTCGCGCCAGCGCGTAGAGCGCCCGCA CTCCTGAGGGGCGGCTCGCGCCAGGGCGTAGAGCGCCCGCA < 41bp 0.548921220823067 0.808559507849511 0.85272825 0.92289674 prediction 0.519276574052886 Functional Gain - LOC101927196 ENSG00000188738 CDS Human protein_coding chr2:186603433 chr2:186603429 synonymous SNV . 0 25 hm5C_associated_SNPs_106579 0 0 0 0 0 unknown 0.500231643923159 0.500231643949632 0.14033698 5.29465360443737e-11 hm5C_site_59724 DeepMRMD:0.14033698;iRNA_m5C:5.29465360443737e-11 59725 chr3 125648210 125648210 1 + C A UCEC 125648209 + 125648189 125648229 41 CGCTGCTCAAAAGGGTTTGCCCTGAGACTCCGAGAAGAAGC CGCTGCTCAAAAGGGTTTGCCATGAGACTCCGAGAAGAAGC < 41bp 0.498931596311695 0.75963147600615 0.0502837 0.28899056 prediction 0.519262952012299 Functional Gain - ALG1L ENSG00000189366 CDS Human protein_coding chr3:125648209 chr3:125648210 nonsynonymous SNV 0.056 1 22 hm5C_associated_SNPs_106580 0 0 0 0 0 exosome 0.500231643919372 0.500231686628956 0 8.54191692933881e-08 hm5C_site_59725 DeepMRMD:0;iRNA_m5C:8.54191692933881e-08 59726 chr12 4920094 4920094 1 + T C UCEC 4920092 + 4920072 4920112 41 CCGGCCTTCTTCCGGAACATCATGAACATCATTGACTTGGT CCGGCCTTCTTCCGGAACATCACGAACATCATTGACTTGGT < 41bp 0.492733813593142 0.75960255663063 0.17109 0.26918903 prediction 0.51920511326126 Functional Gain - KCNA6 ENSG00000151079 CDS Human protein_coding chr12:4920092 chr12:4920094 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106581 0 0 0 0 0 exosome 0.500232099460144 0.500234337287172 0 4.47565405736761e-06 hm5C_site_59726 DeepMRMD:0;iRNA_m5C:4.47565405736761e-06 59727 chr4 1737512 1737512 1 + C T CESC 1737511 + 1737491 1737531 41 TACCTCAAGTTCGACCCCCTCCTGAGGGACAGTCCTGGTAG TACCTCAAGTTCGACCCCCTCTTGAGGGACAGTCCTGGTAG < 41bp 0.501046930578371 0.76064437220592 0.1270014 0.14370328 prediction 0.519194883255097 Functional Gain - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1737511 chr4:1737512 synonymous SNV . 0 22 hm5C_associated_SNPs_106582 0 0 1 0 2 Cytosol 0.500231643921088 0.500231643921093 0 9.54791801177635e-15 hm5C_site_59727 DeepMRMD:0;iRNA_m5C:9.54791801177635e-15 59728 chr18 50994318 50994318 1 + C A UCEC 50994314 + 50994294 50994334 41 TGTCCACTCTGGAGAGGTCGCTGGCTGCACGCCGAGCCCCC TGTCCACTCTGGAGAGGTCGCTGGATGCACGCCGAGCCCCC < 41bp 0.510723721512403 0.770319906370596 0.7483291 0.8979327 prediction 0.519192369716385 Functional Gain - DCC ENSG00000187323 CDS Human protein_coding chr18:50994314 chr18:50994318 nonsynonymous SNV 0.988 4 25 hm5C_associated_SNPs_106583 0 0 0 0 2 exosome 0.500231643924866 0.500231643921098 0.2992072 0 hm5C_site_59728 DeepMRMD:0.2992072;iRNA_m5C:0 59729 chr20 8609040 8609040 1 + C A LAML 8609036 + 8609016 8609056 41 GGGCCTGACCTCGTGAACATCTCCCATTTGAATCTCGTGGC GGGCCTGACCTCGTGAACATCTCCAATTTGAATCTCGTGGC < 41bp 0.379229675321663 0.7595939954079 0.3397321 0.95619285 prediction 0.5191879908158 Functional Gain - PLCB1 ENSG00000182621 CDS Human protein_coding chr20:8609036 chr20:8609040 nonsynonymous SNV 0.957 2 25 hm5C_associated_SNPs_106584 0 0 1 0 2 Nucleus 0.500231644223021 0.500197830740286 0.9123857 0 hm5C_site_59729 DeepMRMD:0.9123857;iRNA_m5C:0 59730 chr19 37742849 37742849 1 + C G rs139781852 37742848 + 37742828 37742868 41 GCACGGCGGGTATAGTGGTTCCGCAACCTTGGGATGTTCGG GCACGGCGGGTATAGTGGTTCGGCAACCTTGGGATGTTCGG < 41bp 0.467471140579929 0.75959020573806 0.56896335 0.88618445 prediction 0.51918041147612 Functional Gain - LINC01535 ENSG00000226686 ncRNA_exonic Human lincRNA chr19:37742848 chr19:37742849 . . 0 22 hm5C_associated_SNPs_106585 0 0 1 0 0 unknown 0.500231643922 0.500231643921092 0.6344422 0 hm5C_site_59730 DeepMRMD:0.6344422;iRNA_m5C:0 59731 chr7 150417427 150417427 1 + C T SKCM 150417426 + 150417406 150417446 41 ACCTGCTCTCGGCCCCCGGACCCCACGCGCTGCTCCTGGTG ACCTGCTCTCGGCCCCCGGACTCCACGCGCTGCTCCTGGTG < 41bp 0.520805005932735 0.780392893011492 0.05005163 0.92865634 prediction 0.519175774157514 Functional Gain - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417426 chr7:150417427 nonsynonymous SNV 0.233 1 22 hm5C_associated_SNPs_106586 0 0 0 0 1 unknown 0.500231643921085 0.500231643921283 0.85731268 3.96571664396106e-13 hm5C_site_59731 DeepMRMD:0.85731268;iRNA_m5C:3.96571664396106e-13 59732 chr1 236917339 236917339 1 + C A rs144680712 236917335 + 236917315 236917355 41 GCGTCTGAGGCGCCAGTTTGCTGCCCAAGCCAATGCCATTG GCGTCTGAGGCGCCAGTTTGCTGCACAAGCCAATGCCATTG < 41bp 0.666318903313179 0.925892083211254 0.19874209 0.22738749 prediction 0.51914635979615 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236917335 chr1:236917339 synonymous SNV . 0 25 hm5C_associated_SNPs_106587 3 0 0 0 2 chromatin 0.500231643921092 0.500231643869789 0 0 hm5C_site_59732 DeepMRMD:0;iRNA_m5C:0 not specified not specified 59733 chr1 177245469 177245469 1 + C T rs201590359 177245468 + 177245448 177245488 41 GCAAGTGCAGCCCCACCTTCCCTGAATGCAACTGCCCTGAT GCAAGTGCAGCCCCACCTTCCTTGAATGCAACTGCCCTGAT < 41bp 0.507034559888119 0.766606650079727 0.1320132 0.08878115 prediction 0.519144180383216 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177245468 chr1:177245469 nonsynonymous SNV 0.969 3 22 hm5C_associated_SNPs_106588 0 0 0 0 0 Nucleus 0.500231643737052 0.500231643909726 0 3.45347306307531e-10 hm5C_site_59733 DeepMRMD:0;iRNA_m5C:3.45347306307531e-10 59734 chr4 71232584 71232584 1 + C A UCEC 71232580 + 71232560 71232600 41 GTCCAGGGAGAATTCAATCACACTCTCTTCCTCCTCCTTAT GTCCAGGGAGAATTCAATCACACTATCTTCCTCCTCCTTAT < 41bp 0.363771267037247 0.759562999904128 0.11026096 0.108633995 prediction 0.519125999808255 Functional Gain - SMR3A ENSG00000109208 CDS Human protein_coding chr4:71232580 chr4:71232584 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_106589 0 0 0 0 0 unknown 0.500231643921097 0.500231643921092 0 0 hm5C_site_59734 DeepMRMD:0;iRNA_m5C:0 59735 chr8 68956773 68956773 1 + T C LGG 68956771 + 68956751 68956791 41 ATGGACATCGGTACCTTTTTCGTGGCCGGATCAACACGGAG ATGGACATCGGTACCTTTTTCGCGGCCGGATCAACACGGAG < 41bp 0.493555743573508 0.75956133702394 0.8576499 0.8191157 prediction 0.51912267404788 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68956771 chr8:68956773 synonymous SNV . 0 23 hm5C_associated_SNPs_106590 0 0 0 0 2 Nucleus 0.500231643909831 0.500231643918832 0 1.80022663442969e-11 hm5C_site_59735 DeepMRMD:0;iRNA_m5C:1.80022663442969e-11 59736 chr1 220970101 220970101 1 + C G rs150126154 220970097 + 220970077 220970117 41 TGCACTTCGAGCCTCACATGCGACCGAGACGTCCTCATCAA TGCACTTCGAGCCTCACATGCGACGGAGACGTCCTCATCAA < 41bp 0.555355189452678 0.814916204619694 0.31457093 0.65484524 prediction 0.519122030334032 Functional Gain - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220970097 chr1:220970101 nonsynonymous SNV 0.068 2 25 hm5C_associated_SNPs_106591 0 0 1 0 1 Ribosome 0.500232514481363 0.500278161934031 0.30969048 9.12949053351042e-05 hm5C_site_59736 DeepMRMD:0.30969048;iRNA_m5C:9.12949053351042e-05 59737 chr6 118823497 118823497 1 + T G rs549189300 118823495 + 118823475 118823515 41 TTCCAAGCAATTTCAGCAACCATGAGTTTCTGGCCCCATGC TTCCAAGCAATTTCAGCAACCAGGAGTTTCTGGCCCCATGC < 41bp 0.565599783510089 0.825160778458408 0.23386648 0.92531824 prediction 0.519121989896639 Functional Gain - BRD7P3 ENSG00000169075 ncRNA_exonic Human processed_pseudogene chr6:118823495 chr6:118823497 . . 0 23 hm5C_associated_SNPs_106592 0 0 0 0 0 unknown 0.500231637867131 0.50023164392386 0.85063648 1.21134586805738e-08 hm5C_site_59737 DeepMRMD:0.85063648;iRNA_m5C:1.21134586805738e-08 59738 chr4 103459077 103459077 1 + T G SKCM 103459074 + 103459054 103459094 41 CATGGTGGACTACCTGGTGCCTCTAGTGAAAAGAACAAGAA CATGGTGGACTACCTGGTGCCTCGAGTGAAAAGAACAAGAA < 41bp 0.399312171062938 0.759559710997126 0.690718 0.23931208 prediction 0.519119421994251 Functional Gain - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103459074 chr4:103459077 synonymous SNV . 0 24 hm5C_associated_SNPs_106593 0 0 1 0 2 Ribosome 0.500231640960443 0.50023168816266 0 9.4404432715578e-08 hm5C_site_59738 DeepMRMD:0;iRNA_m5C:9.4404432715578e-08 59739 chr3 137484109 137484109 1 + C A UCEC 137484105 + 137484085 137484125 41 CGAAGTGCCCCACACCTTGGCTACCGGCGCTCTGCCCTACG CGAAGTGCCCCACACCTTGGCTACAGGCGCTCTGCCCTACG < 41bp 0.35166843062733 0.75955921719821 0.06586477 0.7689463 prediction 0.51911843439642 Functional Gain - SOX14 ENSG00000168875 CDS Human protein_coding chr3:137484105 chr3:137484109 synonymous SNV . 0 25 hm5C_associated_SNPs_106594 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.5378926 0 hm5C_site_59739 DeepMRMD:0.5378926;iRNA_m5C:0 59740 chr3 53752764 53752764 1 + T G rs78911396 53752761 + 53752741 53752781 41 CGGGGCCCTCTGGGTGTCGGCGGTGGGGGTAAAGGCCTGAT CGGGGCCCTCTGGGTGTCGGCGGGGGGGGTAAAGGCCTGAT < 41bp 0.392153254827717 0.759555885184012 0.8993353 0.9267262 prediction 0.519111770368023 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53752761 chr3:53752764 nonsynonymous SNV 1.000 1 24 hm5C_associated_SNPs_106595 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231644418352 0.0547818000000002 9.94519133712402e-10 hm5C_site_59740 DeepMRMD:0.0547818000000002;iRNA_m5C:9.94519133712402e-10 59741 chr11 48510651 48510651 1 + C A LUAD 48510647 + 48510627 48510667 41 TGCATGGCCCAGCTCTTTATCGAGCACATTTTCGGTGGGTC TGCATGGCCCAGCTCTTTATCGAGAACATTTTCGGTGGGTC < 41bp 0.644251777852274 0.903803670287122 0.9104072 0.9161594 prediction 0.519103784869696 Functional Gain - OR4A47 ENSG00000237388 CDS Human protein_coding chr11:48510647 chr11:48510651 nonsynonymous SNV 0.008 4 25 hm5C_associated_SNPs_106596 0 0 0 0 0 unknown 0.500231643921077 0.500231643921069 0.0115044 0 hm5C_site_59741 DeepMRMD:0.0115044;iRNA_m5C:0 59742 chr3 152880293 152880293 1 + C A rs142864284 152880289 + 152880269 152880309 41 CGCACCCCAGGGATACGCTGCCGCCGCCGCCGGCCGGCCCG CGCACCCCAGGGATACGCTGCCGCAGCCGCCGGCCGGCCCG < 41bp 0.539004636442921 0.798552623326758 0.29854268 0.39814442 prediction 0.519095973767673 Functional Gain - RAP2B ENSG00000181467 UTR5 Human protein_coding chr3:152880289 chr3:152880293 . . 0 25 hm5C_associated_SNPs_106597 0 0 1 0 0 Ribosome 0.500231644226648 0.500231643920969 0 0 hm5C_site_59742 DeepMRMD:0;iRNA_m5C:0 59743 chr16 88017810 88017810 1 + C T HNSC 88017809 + 88017789 88017829 41 CAGCACAGCCCCATCCAGGTCCCCATGGTGGCCGGCTCCCC CAGCACAGCCCCATCCAGGTCTCCATGGTGGCCGGCTCCCC < 41bp 0.537551620898379 0.797067222545905 0.51545537 0.9670783 prediction 0.519031203295053 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88017809 chr16:88017810 nonsynonymous SNV 0.990 3 22 hm5C_associated_SNPs_106598 0 0 1 0 1 Cytosol 0.500231644162197 0.500231643921953 0.90324586 0 hm5C_site_59743 DeepMRMD:0.90324586;iRNA_m5C:0 59744 chr4 37863199 37863199 1 + C A PAAD 37863195 + 37863175 37863215 41 CTATTGAAGAACATTTTTTCCAGCCACAGAAGTACAATCTG CTATTGAAGAACATTTTTTCCAGCAACAGAAGTACAATCTG < 41bp 0.368877024106315 0.759506123335098 0.12315893 0.23248246 prediction 0.519012246670195 Functional Gain - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37863195 chr4:37863199 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_106599 0 0 1 0 1 Nucleus 0.500231643833442 0.500231008105302 0 0 hm5C_site_59744 DeepMRMD:0;iRNA_m5C:0 59745 chr16 55519270 55519270 1 + C A LUAD 55519266 + 55519246 55519286 41 GGACTCCTGGCTCATGCCTTCGCCCCAGGCACTGGTGTTGG GGACTCCTGGCTCATGCCTTCGCCACAGGCACTGGTGTTGG < 41bp 0.322616992038746 0.759503758093418 0.115566045 0.25222886 prediction 0.519007516186835 Functional Gain - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55519266 chr16:55519270 nonsynonymous SNV 0.949 4 25 hm5C_associated_SNPs_106600 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_59745 DeepMRMD:0;iRNA_m5C:0 59746 chr22 39884189 39884189 1 + C G SKCM 39884185 + 39884165 39884205 41 TGTCTTCCTGGACCACTTCCCGCCCGGCGGCCGGCAGGACG TGTCTTCCTGGACCACTTCCCGCCGGGCGGCCGGCAGGACG < 41bp 0.537278766084125 0.796762673102472 0.12738791 0.7059225 prediction 0.518967814036693 Functional Gain - MGAT3 ENSG00000128268 CDS Human protein_coding chr22:39884185 chr22:39884189 synonymous SNV . 0 25 hm5C_associated_SNPs_106601 0 0 0 0 0 Endoplasmic reticulum 0.500231643920997 0.500231643921092 0.411845 1.91624494050302e-13 hm5C_site_59746 DeepMRMD:0.411845;iRNA_m5C:1.91624494050302e-13 59747 chr19 33464132 33464132 1 + C A PRAD 33464128 + 33464108 33464148 41 AAAGAACCCCCCTGATGATACGGGCCCCGTGCACGTGCCTT AAAGAACCCCCCTGATGATACGGGACCCGTGCACGTGCCTT < 41bp 0.652498332638048 0.911979781743445 0.38322794 0.48684645 prediction 0.518962898210795 Functional Gain - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33464128 chr19:33464132 synonymous SNV . 0 25 hm5C_associated_SNPs_106602 0 0 1 0 2 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59747 DeepMRMD:0;iRNA_m5C:0 59748 chrX 47102986 47102986 1 + T C LIHC 47102984 + 47102964 47103004 41 TGGGAGGGCCTGTATAACGTCCTGATGTACCGGCTCTCGTA TGGGAGGGCCTGTATAACGTCCCGATGTACCGGCTCTCGTA < 41bp 0.54104408896489 0.800508509990524 0.33293042 0.35294527 prediction 0.518928842051269 Functional Gain - USP11 ENSG00000102226 CDS Human protein_coding chrX:47102984 chrX:47102986 nonsynonymous SNV 0.423 1 23 hm5C_associated_SNPs_106603 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59748 DeepMRMD:0;iRNA_m5C:0 59749 chr2 171572790 171572790 1 + C A SKCM 171572786 + 171572766 171572806 41 CAGGACCGCACCCCCAGCGCCTCCCCGGACCTGGGCAAGCA CAGGACCGCACCCCCAGCGCCTCCACGGACCTGGGCAAGCA < 41bp 0.343539775471434 0.759459127288616 0.12578598 0.9654692 prediction 0.518918254577232 Functional Gain - SP5 ENSG00000204335 CDS Human protein_coding chr2:171572786 chr2:171572790 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106604 0 0 1 0 1 insoluble cytoplasm 0.500231658955338 0.500231652419512 0.9309384 0 hm5C_site_59749 DeepMRMD:0.9309384;iRNA_m5C:0 59750 chr5 148206917 148206917 1 + C A rs1042718 148206916 + 148206896 148206936 41 CCCATTCAGATGCACTGGTACCGGGCCACCCACCAGGAAGC CCCATTCAGATGCACTGGTACAGGGCCACCCACCAGGAAGC < 41bp 0.499115018044664 0.759456795747887 0.32519355 0.8702313 prediction 0.518913591495775 Functional Gain - ADRB2 ENSG00000169252 CDS Human protein_coding chr5:148206916 chr5:148206917 synonymous SNV . 0 22 hm5C_associated_SNPs_106605 0 0 0 0 0 Cytoplasm 0.500231643921092 0.500231643921092 0.7404626 0 hm5C_site_59750 DeepMRMD:0.7404626;iRNA_m5C:0 59751 chr14 53240315 53240315 1 + C G rs144864228 53240314 + 53240294 53240334 41 GATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGG GATCCACCCACCTCGGCCTCCGAAAGTGCTGGGATTACAGG < 41bp 0.524115770322217 0.783571845546694 0.34912452 0.88781846 prediction 0.518912150448953 Functional Gain - STYX ENSG00000198252 UTR3 Human protein_coding chr14:53240314 chr14:53240315 . . 0 22 hm5C_associated_SNPs_106606 0 0 0 0 0 Nucleus 0.500232050882394 0.500229081841055 0.77563692 0 hm5C_site_59751 DeepMRMD:0.77563692;iRNA_m5C:0 59752 chr4 3487294 3487294 1 + C G LUAD 3487290 + 3487270 3487310 41 TGGCGTCTTCTTCCTGTCCTCGGCCGAGGGGGAGCAGATCA TGGCGTCTTCTTCCTGTCCTCGGCGGAGGGGGAGCAGATCA < 41bp 0.558248494998513 0.817701433960111 0.6158273 0.9000356 prediction 0.518905877923196 Functional Gain - DOK7 ENSG00000175920 CDS Human protein_coding chr4:3487290 chr4:3487294 nonsynonymous SNV 0.174 1 25 hm5C_associated_SNPs_106607 0 0 0 0 2 nucleus 0.500231643921093 0.500231643921021 0.5684166 0 hm5C_site_59752 DeepMRMD:0.5684166;iRNA_m5C:0 59753 chr19 34838929 34838929 1 + C T SKCM 34838928 + 34838908 34838948 41 CGCATCGGACCTGGCCCTTCCCCGAGTTCTTCACAGAAGGG CGCATCGGACCTGGCCCTTCCTCGAGTTCTTCACAGAAGGG < 41bp 0.506158058238315 0.765610721980156 0.50297123 0.72044665 prediction 0.518905327483682 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34838928 chr19:34838929 nonsynonymous SNV 0.970 4 22 hm5C_associated_SNPs_106608 0 0 1 0 0 Cytosol 0.500231643921098 0.500231643926021 0.43495084 9.84679005000544e-12 hm5C_site_59753 DeepMRMD:0.43495084;iRNA_m5C:9.84679005000544e-12 59754 chr4 2632748 2632748 1 + T A KIRP 2632744 + 2632724 2632764 41 TGCTGGAGATGAAGGTCCGCCTGCTCCGGCAGCTGTCGGCT TGCTGGAGATGAAGGTCCGCCTGCACCGGCAGCTGTCGGCT < 41bp 0.421196368261975 0.759452149649226 0.41172013 0.20962995 prediction 0.518904299298453 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2632744 chr4:2632748 nonsynonymous SNV 0.980 4 25 hm5C_associated_SNPs_106609 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59754 DeepMRMD:0;iRNA_m5C:0 59755 chr16 88052124 88052124 1 + T C SKCM 88052122 + 88052102 88052142 41 ATCCCCTCCGACATGCTGCACATCAGCACCAACTGCCGCAC ATCCCCTCCGACATGCTGCACACCAGCACCAACTGCCGCAC < 41bp 0.483497568430803 0.759446079056779 0.029457927 0.023201764 prediction 0.518892158113558 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88052122 chr16:88052124 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106610 0 0 0 0 1 Cytosol 0.500232132807263 0.500233067804649 0 1.86999477258531e-06 hm5C_site_59755 DeepMRMD:0;iRNA_m5C:1.86999477258531e-06 59756 chr17 61556390 61556390 1 + T C UCEC 61556388 + 61556368 61556408 41 TACAACGCCCTGCTAAGCAACATGAGCAGGATCTACTCCAC TACAACGCCCTGCTAAGCAACACGAGCAGGATCTACTCCAC < 41bp 0.495166594403184 0.759433669198981 0.2510379 0.24796167 prediction 0.518867338397962 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61556388 chr17:61556390 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_106611 0 0 0 0 2 cytosol 0.500231643898695 0.500231643793857 0 0 hm5C_site_59756 DeepMRMD:0;iRNA_m5C:0 59757 chr19 3747899 3747899 1 + C G rs368046150 3747895 + 3747875 3747915 41 CGTTAACAGCGACTACGAGACGGACGGCGAGGGCGGCGCGT CGTTAACAGCGACTACGAGACGGAGGGCGAGGGCGGCGCGT < 41bp 0.547352756450997 0.806781403728778 0.7279454 0.8895835 prediction 0.518857294555563 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3747895 chr19:3747899 nonsynonymous SNV 0.469 2 25 hm5C_associated_SNPs_106612 0 0 0 0 0 Ribosome 0.500231643950835 0.500231643935442 0.3232762 0 hm5C_site_59757 DeepMRMD:0.3232762;iRNA_m5C:0 59758 chr4 71255429 71255429 1 + T A LUAD 71255425 + 71255405 71255445 41 GGGGACCATATCCACCTGGACCGCTGGCTCCTCCTCAACCT GGGGACCATATCCACCTGGACCGCAGGCTCCTCCTCAACCT < 41bp 0.455388197141628 0.759415930272233 0.13113606 0.17970076 prediction 0.518831860544465 Functional Gain - SMR3B ENSG00000171201 CDS Human protein_coding chr4:71255425 chr4:71255429 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_106613 0 0 0 0 1 unknown 0.500231643918498 0.50023164391663 0 0 hm5C_site_59758 DeepMRMD:0;iRNA_m5C:0 59759 chr6 170190418 170190418 1 + T G rs3823467 170190416 + 170190396 170190436 41 CGGGGCACGGGGTGGCGCTCCCTGGTAAAGCAGCGGCCAGG CGGGGCACGGGGTGGCGCTCCCGGGTAAAGCAGCGGCCAGG < 41bp 0.415951216781316 0.759393629637816 0.17387664 0.91023684 prediction 0.518787259275632 Functional Gain - LINC00242;LINC00574 ENSG00000229214;ENSG00000231690 ncRNA_exonic Human other chr6:170190416 chr6:170190418 . . 0 23 hm5C_associated_SNPs_106614 0 0 0 0 1 unknown 0.500231643921091 0.50023164392092 0.82047368 0 hm5C_site_59759 DeepMRMD:0.82047368;iRNA_m5C:0 59760 chr16 74419267 74419267 1 + T A SKCM 74419263 + 74419243 74419283 41 TCTTTCCTGAAGACTATCTTCTGGTCTCGAAATGGACATGA TCTTTCCTGAAGACTATCTTCTGGACTCGAAATGGACATGA < 41bp 0.585971073307549 0.845362916815436 0.030722082 0.17459759 prediction 0.518783687015775 Functional Gain - NPIPB15 ENSG00000196436 CDS Human protein_coding chr16:74419263 chr16:74419267 nonsynonymous SNV 0.003 3 25 hm5C_associated_SNPs_106615 0 0 0 0 2 Endoplasmic reticulum 0.500231643415514 0.500231643676712 0 5.22396792490554e-10 hm5C_site_59760 DeepMRMD:0;iRNA_m5C:5.22396792490554e-10 59761 chr16 21964769 21964769 1 + T A ESCA 21964765 + 21964745 21964785 41 ATGAAGCTACTAACCAGAGCCGGCTCTTTCTCGGTGAGCTC ATGAAGCTACTAACCAGAGCCGGCACTTTCTCGGTGAGCTC < 41bp 0.466360492880033 0.759383246780865 0.07531485 0.08687839 prediction 0.51876649356173 Functional Gain - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21964765 chr16:21964769 nonsynonymous SNV 0.869 0 25 hm5C_associated_SNPs_106616 0 0 1 0 1 Ribosome 0.500231644011876 0.500231655238588 0 2.24534228987494e-08 hm5C_site_59761 DeepMRMD:0;iRNA_m5C:2.24534228987494e-08 59762 chr17 4905377 4905377 1 + C A rs138692366 4905373 + 4905353 4905393 41 GCTCTGTGAGGACCTCTTCTCTCGCGTTAGTGAGAACCAGA GCTCTGTGAGGACCTCTTCTCTCGAGTTAGTGAGAACCAGA < 41bp 0.34415493949698 0.759363750704032 0.17653209 0.38144347 prediction 0.518727501408065 Functional Gain - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4905373 chr17:4905377 synonymous SNV . 0 25 hm5C_associated_SNPs_106617 0 0 1 0 2 Ribosome 0.500229766508279 0.499176218026611 0 0 hm5C_site_59762 DeepMRMD:0;iRNA_m5C:0 59763 chr3 98251066 98251066 1 + C A LUAD 98251062 + 98251042 98251082 41 GGGAGCGTTGCATTTCAAACCCGGCAGCCGAAGACTGATCG GGGAGCGTTGCATTTCAAACCCGGAAGCCGAAGACTGATCG < 41bp 0.647478131813442 0.906839484318207 0.23907313 0.3162413 prediction 0.518722705009529 Functional Gain - GPR15 ENSG00000154165 CDS Human protein_coding chr3:98251062 chr3:98251066 synonymous SNV . 0 25 hm5C_associated_SNPs_106618 0 0 0 0 0 exosome 0.500231844005305 0.500231647481364 0 0 hm5C_site_59763 DeepMRMD:0;iRNA_m5C:0 59764 chr1 228675246 228675246 1 + C A rs536308340 228675242 + 228675222 228675262 41 CTGCGCCCTGTGCCAGCGCGCGCCCCGGGAACCGGTGCGCG CTGCGCCCTGTGCCAGCGCGCGCCACGGGAACCGGTGCGCG < 41bp 0.637140347629834 0.896500546636231 0.08712593 0.15642887 prediction 0.518720398012793 Functional Gain - RNF187 ENSG00000168159 UTR5 Human protein_coding chr1:228675242 chr1:228675246 . . 0 25 hm5C_associated_SNPs_106619 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921112 0 3.90798504668055e-14 hm5C_site_59764 DeepMRMD:0;iRNA_m5C:3.90798504668055e-14 59765 chr2 95540641 95540641 1 + C G LUAD 95540640 + 95540620 95540660 41 CTGCATCCTTCGCGACACCTCCGAGGACCTGCGGCTCCAGT CTGCATCCTTCGCGACACCTCGGAGGACCTGCGGCTCCAGT < 41bp 0.4464562481854 0.75934904189442 0.866351 0.93146396 prediction 0.51869808378884 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95540640 chr2:95540641 synonymous SNV . 0 22 hm5C_associated_SNPs_106620 0 0 0 0 0 chromatin 0.500231643172412 0.500231643946728 0.13022592 1.54863144530282e-09 hm5C_site_59765 DeepMRMD:0.13022592;iRNA_m5C:1.54863144530282e-09 59766 chr14 23848709 23848709 1 + C G rs139534097 23848708 + 23848688 23848728 41 CAGCAGTGACTCTGGGGCTACCTGGCTCCTAGGCCCAGCCA CAGCAGTGACTCTGGGGCTACGTGGCTCCTAGGCCCAGCCA < 41bp 0.565877353993425 0.825224936645328 0.75168395 0.9143727 prediction 0.518695165303807 Functional Gain - CMTM5 ENSG00000166091 UTR3 Human protein_coding chr14:23848708 chr14:23848709 . . 0 22 hm5C_associated_SNPs_106621 0 0 0 0 1 exosome 0.500231643921089 0.500231643921102 0.3253775 2.57571741713036e-14 hm5C_site_59766 DeepMRMD:0.3253775;iRNA_m5C:2.57571741713036e-14 59767 chr6 28333707 28333707 1 + C A UCS 28333703 + 28333683 28333723 41 TCCTTGAACATCACAGAATCCACACTGGGGAGAAGCCGTAT TCCTTGAACATCACAGAATCCACAATGGGGAGAAGCCGTAT < 41bp 0.338280914694863 0.759347285068475 0.034294933 0.037979633 prediction 0.51869457013695 Functional Gain - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28333703 chr6:28333707 nonsynonymous SNV 0.997 2 25 hm5C_associated_SNPs_106622 0 0 0 0 0 exosome 0.500231643285571 0.500231643918647 0 1.26615207207692e-09 hm5C_site_59767 DeepMRMD:0;iRNA_m5C:1.26615207207692e-09 59768 chr8 77690538 77690538 1 + T A LUSC 77690534 + 77690514 77690554 41 CCACCAAGGTCAAGTTGAATCTGGTACAACATGTCCGTTCG CCACCAAGGTCAAGTTGAATCTGGAACAACATGTCCGTTCG < 41bp 0.454187984191857 0.759346988605016 0.49844778 0.807945 prediction 0.518693977210032 Functional Gain - ZFHX4 ENSG00000091656 CDS Human protein_coding chr8:77690534 chr8:77690538 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_106623 0 0 1 0 1 Ribosome 0.500231643658681 0.500231643709423 0.61589 1.01483044190331e-10 hm5C_site_59768 DeepMRMD:0.61589;iRNA_m5C:1.01483044190331e-10 59769 chr10 72633215 72633215 1 + C T DLBC 72633214 + 72633194 72633234 41 GCAGGGTGGCATCTATGCTTCCCCAACCATCGCAGGCTCAC GCAGGGTGGCATCTATGCTTCTCCAACCATCGCAGGCTCAC < 41bp 0.53541484336432 0.794760135440735 0.111769885 0.9184272 prediction 0.51869058415283 Functional Gain - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72633214 chr10:72633215 synonymous SNV . 0 22 hm5C_associated_SNPs_106624 0 0 1 0 1 Ribosome 0.50023164453361 0.502595961346324 0.8368544 0.0047286336254273 hm5C_site_59769 DeepMRMD:0.8368544;iRNA_m5C:0.0047286336254273 59770 chr1 1269227 1269227 1 + C A UCEC 1269223 + 1269203 1269243 41 TCCCACCTCCCGCTCACGGGCTGCCTGAGCACACTCTTCCT TCCCACCTCCCGCTCACGGGCTGCATGAGCACACTCTTCCT < 41bp 0.348049615956538 0.759344344860283 0.20609951 0.2468997 prediction 0.518688689720566 Functional Gain - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1269223 chr1:1269227 nonsynonymous SNV 0.993 5 25 hm5C_associated_SNPs_106625 0 0 0 0 0 chromatin 0.500231643914995 0.500231540272915 0 0 hm5C_site_59770 DeepMRMD:0;iRNA_m5C:0 59771 chr9 116133183 116133183 1 + T G rs113842877 116133181 + 116133161 116133201 41 TTTCTAGCACACAAGAGCAACCTGAAAGGCTGCTCCTGGCC TTTCTAGCACACAAGAGCAACCGGAAAGGCTGCTCCTGGCC < 41bp 0.477685216163741 0.759336003519922 0.35877532 0.73889804 prediction 0.518672007039845 Functional Gain - BSPRY ENSG00000119411 UTR3 Human protein_coding chr9:116133181 chr9:116133183 . . 0 23 hm5C_associated_SNPs_106626 0 0 0 0 0 Ribosome 0.500231643922581 0.500231643921092 0.47779608 0 hm5C_site_59771 DeepMRMD:0.47779608;iRNA_m5C:0 59772 chr13 44466616 44466616 1 + T A rs548407129 44466612 + 44466592 44466632 41 ACTCTAAGATTTCTGCTTGGCTGCTTACCAAGATTGGCAAC ACTCTAAGATTTCTGCTTGGCTGCATACCAAGATTGGCAAC < 41bp 0.561747561107587 0.821075456986188 0.02490154 0.09314838 prediction 0.518655791757203 Functional Gain - LACC1 ENSG00000179630 UTR3 Human protein_coding chr13:44466612 chr13:44466616 . . 0 25 hm5C_associated_SNPs_106627 0 0 0 3 0 exosome 0.500231643921092 0.500231643921092 0 1.11022302462516e-15 hm5C_site_59772 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 59773 chr18 67365760 67365760 1 + T A LUAD 67365756 + 67365736 67365776 41 TCCACAATGCCAAGGTCAAACTGGTGATGTGGCCTCTCAGC TCCACAATGCCAAGGTCAAACTGGAGATGTGGCCTCTCAGC < 41bp 0.584143212030228 0.84346532949292 0.21025991 0.2118586 prediction 0.518644234925383 Functional Gain - DOK6 ENSG00000206052 CDS Human protein_coding chr18:67365756 chr18:67365760 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_106628 0 0 0 0 1 Endoplasmic reticulum 0.500233892583729 0.500231735997724 0 0 hm5C_site_59773 DeepMRMD:0;iRNA_m5C:0 59774 chr19 52795604 52795604 1 + C A rs530013877 52795600 + 52795580 52795620 41 CATGCTTATTGCAGTTAGCACACACTTTTCCTGACAGGCAC CATGCTTATTGCAGTTAGCACACAATTTTCCTGACAGGCAC < 41bp 0.433327780700774 0.759314043886628 0.13126296 0.20827144 prediction 0.518628087773255 Functional Gain - ZNF766 ENSG00000269102 ncRNA_intronic Human antisense chr19:52795600 chr19:52795604 . . 0 25 hm5C_associated_SNPs_106629 0 0 1 0 0 chromatin 0.500229728087913 0.500209938588788 0 0 hm5C_site_59774 DeepMRMD:0;iRNA_m5C:0 59775 chr20 34287591 34287591 1 + C A STAD 34287587 + 34287567 34287607 41 GTGGGTCCCTACGGACAGTCCCAGCCAAGCTGCTTCGACCG GTGGGTCCCTACGGACAGTCCCAGACAAGCTGCTTCGACCG < 41bp 0.370304261029036 0.759290543594109 0.05565837 0.09661493 prediction 0.518581087188217 Functional Gain - ROMO1 ENSG00000125995 CDS Human protein_coding chr20:34287587 chr20:34287591 nonsynonymous SNV 0.990 3 25 hm5C_associated_SNPs_106630 0 0 1 0 2 Ribosome 0.500231644066906 0.500231644731635 0 1.32945765507486e-09 hm5C_site_59775 DeepMRMD:0;iRNA_m5C:1.32945765507486e-09 59776 chr16 69964118 69964118 1 + C T STAD 69964117 + 69964097 69964137 41 TACTTTGTGGACCACAATACCCGCACCACCACCTTTAAGGA TACTTTGTGGACCACAATACCTGCACCACCACCTTTAAGGA < 41bp 0.502199685396534 0.761486279464804 0.088291734 0.0817655 prediction 0.518573188136539 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69964117 chr16:69964118 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_106631 0 0 0 0 2 Ribosome 0.500232142893029 0.500231643805419 0 0 hm5C_site_59776 DeepMRMD:0;iRNA_m5C:0 59777 chr12 549866 549866 1 + C T SKCM 549865 + 549845 549885 41 TTCCTTAGAAGAAGAACTTGCCCGAATTCGTGAGGAAGAGG TTCCTTAGAAGAAGAACTTGCTCGAATTCGTGAGGAAGAGG < 41bp 0.507486218384751 0.766764455847938 0.063530475 0.21104962 prediction 0.518556474926373 Functional Gain - CCDC77 ENSG00000120647 CDS Human protein_coding chr12:549865 chr12:549866 synonymous SNV . 0 22 hm5C_associated_SNPs_106632 0 0 1 0 2 cytosol 0.500231643921099 0.500231645457707 0 3.07321657011528e-09 hm5C_site_59777 DeepMRMD:0;iRNA_m5C:3.07321657011528e-09 59778 chr8 38854660 38854660 1 + C A rs148707472 38854656 + 38854636 38854676 41 GTTGCTTGGCCTGGTGGGCCCAGTCCTCGGTGCGGCGCGGC GTTGCTTGGCCTGGTGGGCCCAGTACTCGGTGCGGCGCGGC < 41bp 0.635514246080476 0.894788574826146 0.48233104 0.8330982 prediction 0.51854865749134 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38854656 chr8:38854660 synonymous SNV . 0 25 hm5C_associated_SNPs_106633 2 0 1 0 1 Ribosome 0.500231643921092 0.500231643921086 0.6661964 0 hm5C_site_59778 DeepMRMD:0.6661964;iRNA_m5C:0 not specified not specified 59779 chr16 55705990 55705990 1 + C T UCEC 55705989 + 55705969 55706009 41 TGTGGCCACACCTGGAACAGCCCCAACTGTACCGACCCCAA TGTGGCCACACCTGGAACAGCTCCAACTGTACCGACCCCAA < 41bp 0.487318178064893 0.759271675119428 0.18440023 0.8480065 prediction 0.518543350238856 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55705989 chr16:55705990 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_106634 0 0 0 0 1 exosome 0.500231643921097 0.500231643921092 0.696013 0 hm5C_site_59779 DeepMRMD:0.696013;iRNA_m5C:0 59780 chr11 7870631 7870631 1 + C A rs11041601 7870627 + 7870607 7870647 41 GACCGCTACGTGGCCATCTGCAACCCCCTGATTTACACAGC GACCGCTACGTGGCCATCTGCAACACCCTGATTTACACAGC < 41bp 0.411459597017882 0.759260172214206 0.30709332 0.2389062 prediction 0.518520344428413 Functional Gain - OR5E1P ENSG00000170688 ncRNA_exonic Human unprocessed_pseudogene chr11:7870627 chr11:7870631 . . 0 25 hm5C_associated_SNPs_106635 0 0 0 0 0 unknown 0.500231643920157 0.500193957566676 0 0 hm5C_site_59780 DeepMRMD:0;iRNA_m5C:0 59781 chr9 133333935 133333935 1 + C A rs143405567 133333931 + 133333911 133333951 41 CGCAAACAAGTGGAAATCGCCCAGCGGGAGGGGGCCAAGTA CGCAAACAAGTGGAAATCGCCCAGAGGGAGGGGGCCAAGTA < 41bp 0.34914633291681 0.759255734439451 0.24658948 0.18005529 prediction 0.518511468878903 Functional Gain - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133333931 chr9:133333935 synonymous SNV . 0 25 hm5C_associated_SNPs_106636 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59781 DeepMRMD:0;iRNA_m5C:0 59782 chr14 65054947 65054947 1 + T A rs149477152 65054943 + 65054923 65054963 41 TCTTTGAGAAAAAGTATCATCAAGTAGACGTCAGATTCCCA TCTTTGAGAAAAAGTATCATCAAGAAGACGTCAGATTCCCA < 41bp 0.591312194673447 0.850566015258668 0.05121243 0.0860405 prediction 0.518507641170443 Functional Gain - PPP1R36 ENSG00000165807 CDS Human protein_coding chr14:65054943 chr14:65054947 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_106637 0 0 0 0 1 exosome 0.500231690159057 0.50023165680329 0 0 hm5C_site_59782 DeepMRMD:0;iRNA_m5C:0 59783 chr3 147130317 147130317 1 + T G LUSC 147130315 + 147130295 147130335 41 TTGGCACCAGGGGAGAAGCCCTTCAAGTGCGAGTTTGAGGG TTGGCACCAGGGGAGAAGCCCTGCAAGTGCGAGTTTGAGGG < 41bp 0.419999178823599 0.759253552269055 0.458453 0.23487133 prediction 0.51850710453811 Functional Gain - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130315 chr3:147130317 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106638 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59783 DeepMRMD:0;iRNA_m5C:0 59784 chr18 61390631 61390631 1 + T G rs181708322 61390628 + 61390608 61390648 41 TCTGTGGCAAGCTTGCCTCTCCCTAATCAGATGGGGTTGAG TCTGTGGCAAGCTTGCCTCTCCCGAATCAGATGGGGTTGAG < 41bp 0.411788039622336 0.759248169998093 0.18729272 0.14793196 prediction 0.518496339996187 Functional Gain - SERPINB11 ENSG00000206072 CDS Human protein_coding chr18:61390628 chr18:61390631 stoploss 0.115 0 24 hm5C_associated_SNPs_106639 0 0 0 0 0 exosome 0.500231643917218 0.500231659454896 0 3.10753545118558e-08 hm5C_site_59784 DeepMRMD:0;iRNA_m5C:3.10753545118558e-08 59785 chr19 38817261 38817261 1 + T A LIHC 38817257 + 38817237 38817277 41 TGGGTACACAACGCCACTGACTGATGCGGGCAAGGCCTTCT TGGGTACACAACGCCACTGACTGAAGCGGGCAAGGCCTTCT < 41bp 0.423837543460788 0.759248051508418 0.10643089 0.46787965 prediction 0.518496103016837 Functional Gain - KCNK6 ENSG00000099337 CDS Human protein_coding chr19:38817257 chr19:38817261 nonsynonymous SNV 0.261 1 25 hm5C_associated_SNPs_106640 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59785 DeepMRMD:0;iRNA_m5C:0 59786 chr17 51900785 51900785 1 + C A LUAD 51900781 + 51900761 51900801 41 AACCAAACAGCCTCAGGGGACAGCCTGGATGTGAGGGTCCC AACCAAACAGCCTCAGGGGACAGCATGGATGTGAGGGTCCC < 41bp 0.356918725441123 0.759232215471637 0.12351775 0.21022087 prediction 0.518464430943274 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51900781 chr17:51900785 nonsynonymous SNV 0.046 0 25 hm5C_associated_SNPs_106641 0 0 0 0 0 exosome 0.500231643921188 0.500231643921083 0 0 hm5C_site_59786 DeepMRMD:0;iRNA_m5C:0 59787 chr21 47552532 47552532 1 + C G rs568256520 47552531 + 47552511 47552551 41 GTCCATGGTGCTAAGCGGGCCCGGGTCCCACACGGCCAGCA GTCCATGGTGCTAAGCGGGCCGGGGTCCCACACGGCCAGCA < 41bp 0.554819056099478 0.814049441474265 0.4075933 0.89620984 prediction 0.518460770749574 Functional Gain - COL6A2 ENSG00000142173 UTR3 Human protein_coding chr21:47552531 chr21:47552532 . . 0 22 hm5C_associated_SNPs_106642 2 0 0 0 0 Cytosol 0.500231644132975 0.500231645695754 0.79241968 3.125556480299e-09 hm5C_site_59787 DeepMRMD:0.79241968;iRNA_m5C:3.125556480299e-09 Myosclerosis Myosclerosis 59788 chr6 44390536 44390536 1 + T C UCEC 44390534 + 44390514 44390554 41 GACTATAGTGATCCCTCTTACGTGAAGCAGATGGTAAATGT GACTATAGTGATCCCTCTTACGCGAAGCAGATGGTAAATGT < 41bp 0.544584372192841 0.803794127879114 0.7848981 0.85824347 prediction 0.518419511372548 Functional Gain - CDC5L ENSG00000096401 CDS Human protein_coding chr6:44390534 chr6:44390536 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_106643 0 0 1 0 1 Nucleus 0.500231628940896 0.500219778017528 0.14669074 0 hm5C_site_59788 DeepMRMD:0.14669074;iRNA_m5C:0 59789 chr16 90162436 90162436 1 + C G rs149561183 90162432 + 90162412 90162452 41 GAGCAGTTTACAGCAATGTTCAGGCGCAAGGCCTTCCTCCA GAGCAGTTTACAGCAATGTTCAGGGGCAAGGCCTTCCTCCA < 41bp 0.534600647880618 0.793808789600728 0.9296106 0.9585498 prediction 0.518416283440221 Functional Gain - PRDM7;FAM157B ENSG00000261812 CDS Human transcribed_unprocessed_pseudogene chr16:90162432 chr16:90162436 unknown . 0 25 hm5C_associated_SNPs_106644 0 0 0 0 0 unknown 0.500231643649465 0.500231643921092 0.0578784000000001 5.43255440632606e-10 hm5C_site_59789 DeepMRMD:0.0578784000000001;iRNA_m5C:5.43255440632606e-10 59790 chr19 17970751 17970751 1 + C A rs549094579 17970747 + 17970727 17970767 41 CTTCCTTTTGCGGGTGGCGGCGAACGCGGAGAGCACGCCAT CTTCCTTTTGCGGGTGGCGGCGAAAGCGGAGAGCACGCCAT < 41bp 0.535131637877408 0.794337929228867 0.86506975 0.8992958 prediction 0.518412582702919 Functional Gain - RPL18A ENSG00000105640 UTR5 Human protein_coding chr19:17970747 chr19:17970751 . . 0 25 hm5C_associated_SNPs_106645 0 0 1 0 1 Cytosol 0.500231643942429 0.500231643921092 0.0684521 0 hm5C_site_59790 DeepMRMD:0.0684521;iRNA_m5C:0 59791 chr6 43100234 43100234 1 + C T UCEC 43100233 + 43100213 43100253 41 AGCGTGTGACCTGCCTTCCCCCCAAGGGTCTGCCAGAGCCC AGCGTGTGACCTGCCTTCCCCTCAAGGGTCTGCCAGAGCCC < 41bp 0.509390660748803 0.768592747387501 0.047102273 0.06318906 prediction 0.518404173277396 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43100233 chr6:43100234 nonsynonymous SNV 0.799 3 22 hm5C_associated_SNPs_106646 0 0 1 0 0 Endoplasmic reticulum 0.50023874504124 0.500236930727912 0 0 hm5C_site_59791 DeepMRMD:0;iRNA_m5C:0 59792 chrX 150869198 150869198 1 + C A KIRC 150869197 + 150869177 150869217 41 GTCGCGCCGGGCACACCCTCCCCCGGGTCATGGTGTACCGG GTCGCGCCGGGCACACCCTCCACCGGGTCATGGTGTACCGG < 41bp 0.499381524043619 0.759199000095895 0.21783617 0.48930585 prediction 0.51839800019179 Functional Gain - PRRG3 ENSG00000130032 CDS Human protein_coding chrX:150869197 chrX:150869198 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_106647 0 0 0 0 0 exosome 0.500230116574267 0.500231644149406 0 3.05515027831937e-06 hm5C_site_59792 DeepMRMD:0;iRNA_m5C:3.05515027831937e-06 59793 chr19 57910377 57910377 1 + T C STAD 57910375 + 57910355 57910395 41 TTTAAGTACAGTGCCAATTTCATGAAACATCAGACAGTTCA TTTAAGTACAGTGCCAATTTCACGAAACATCAGACAGTTCA < 41bp 0.504516531309777 0.763701138716159 0.093256146 0.050835133 prediction 0.518369214812763 Functional Gain - ZNF548 ENSG00000188785 CDS Human protein_coding chr19:57910375 chr19:57910377 nonsynonymous SNV 0.037 0 23 hm5C_associated_SNPs_106648 0 0 0 0 0 Nucleus 0.500221942443384 0.500129690064568 0 0 hm5C_site_59793 DeepMRMD:0;iRNA_m5C:0 59794 chr5 131728258 131728258 1 + C T SKCM 131728257 + 131728237 131728277 41 CATGGGTGTGGGAGTCAGCTCCACAGCATCCCGCCTGGGCA CATGGGTGTGGGAGTCAGCTCTACAGCATCCCGCCTGGGCA < 41bp 0.510503711891556 0.769683531134843 0.31363663 0.75953364 prediction 0.518359638486574 Functional Gain - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131728257 chr5:131728258 synonymous SNV . 0 22 hm5C_associated_SNPs_106649 0 0 1 0 1 chromatin 0.500231643990011 0.50023164392108 0.51906728 0 hm5C_site_59794 DeepMRMD:0.51906728;iRNA_m5C:0 59795 chr14 34270029 34270029 1 + C A ESCA 34270025 + 34270005 34270045 41 ACGCGCCCGCCGAGGTGACCCTGGCCATGCAGAGCAACCTG ACGCGCCCGCCGAGGTGACCCTGGACATGCAGAGCAACCTG < 41bp 0.449113768752884 0.759177727947081 0.16213655 0.2315126 prediction 0.518355455894162 Functional Gain - NPAS3 ENSG00000151322 CDS Human protein_coding chr14:34270025 chr14:34270029 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106650 0 0 0 0 0 Nucleus 0.500229969724524 0.500231609241379 0 3.27903370878069e-06 hm5C_site_59795 DeepMRMD:0;iRNA_m5C:3.27903370878069e-06 59796 chr16 681342 681342 1 + C A rs80030357 681338 + 681318 681358 41 TGCTGCCAGGGCTGGGGAGCCACCCGGGCGTGTGCCCCAAC TGCTGCCAGGGCTGGGGAGCCACCAGGGCGTGTGCCCCAAC < 41bp 0.653223365710371 0.912401055959426 0.44350672 0.87846184 prediction 0.51835538049811 Functional Gain - WFIKKN1 ENSG00000127578 CDS Human protein_coding chr16:681338 chr16:681342 nonsynonymous SNV 0.050 0 25 hm5C_associated_SNPs_106651 0 0 1 0 1 exosome 0.500229412041244 0.500231647731801 0.75692368 4.47138111336898e-06 hm5C_site_59796 DeepMRMD:0.75692368;iRNA_m5C:4.47138111336898e-06 59797 chr9 101812001 101812001 1 + C A rs141775032 101811997 + 101811977 101812017 41 ACCTGGCTTACCTGGCCCTCCAGGCCCCCCTGGGCCACCTG ACCTGGCTTACCTGGCCCTCCAGGACCCCCTGGGCCACCTG < 41bp 0.354321117609817 0.759169705008442 0.8665203 0.69373775 prediction 0.518339410016885 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101811997 chr9:101812001 synonymous SNV . 0 25 hm5C_associated_SNPs_106652 0 0 0 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_59797 DeepMRMD:0;iRNA_m5C:0 59798 chr2 218999787 218999787 1 + T A LIHC 218999783 + 218999763 218999803 41 GCTCCGTCACTGATGTCTACCTGCTGAACCTAGCCTTGGCC GCTCCGTCACTGATGTCTACCTGCAGAACCTAGCCTTGGCC < 41bp 0.606627941132397 0.86579753356994 0.067784995 0.102662235 prediction 0.518339184875086 Functional Gain - CXCR2 ENSG00000180871 CDS Human protein_coding chr2:218999783 chr2:218999787 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_106653 0 0 0 0 0 exosome 0.500231575065238 0.500231591919346 0 3.37082162182867e-08 hm5C_site_59798 DeepMRMD:0;iRNA_m5C:3.37082162182867e-08 59799 chr12 121154503 121154503 1 + T A BRCA 121154499 + 121154479 121154519 41 CAGGACGTTTTGTCCGCTATCAGTTCACACCGGCATTTCTC CAGGACGTTTTGTCCGCTATCAGTACACACCGGCATTTCTC < 41bp 0.439397680057477 0.759165255245873 0.27015334 0.36914718 prediction 0.518330510491747 Functional Gain - UNC119B ENSG00000175970 CDS Human protein_coding chr12:121154499 chr12:121154503 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_106654 0 0 1 0 2 Ribosome 0.500231643918574 0.500231643920443 0 3.73789887930798e-12 hm5C_site_59799 DeepMRMD:0;iRNA_m5C:3.73789887930798e-12 59800 chr16 23569566 23569566 1 + C A UCEC 23569562 + 23569542 23569582 41 GAAGTTCCCCCTGGACAGCACAGGCTCCGAGCTGAAACAGA GAAGTTCCCCCTGGACAGCACAGGATCCGAGCTGAAACAGA < 41bp 0.353684635702602 0.759159896739219 0.18013453 0.2945848 prediction 0.518319793478437 Functional Gain - UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23569562 chr16:23569566 synonymous SNV . 0 25 hm5C_associated_SNPs_106655 0 0 1 0 1 Ribosome 0.500231644169308 0.500231643910395 0 0 hm5C_site_59800 DeepMRMD:0;iRNA_m5C:0 59801 chr1 11884570 11884570 1 + T C SKCM 11884568 + 11884548 11884588 41 TTCGTGGAGAAGGAAGGCCCCATGATCCACAGTGGTTCGGT TTCGTGGAGAAGGAAGGCCCCACGATCCACAGTGGTTCGGT < 41bp 0.541244171234135 0.800392391010946 0.39278996 0.6323904 prediction 0.518296439553621 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11884568 chr1:11884570 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_106656 0 0 1 0 2 Endoplasmic reticulum 0.500231644160594 0.500231645130043 0.2647808 1.93889748700826e-09 hm5C_site_59801 DeepMRMD:0.2647808;iRNA_m5C:1.93889748700826e-09 59802 chr1 155719387 155719387 1 + C G rs554458598 155719386 + 155719366 155719406 41 TCTTCTCAAGCTGCAGTCCACCGGGTATGGTTCTGGATGGT TCTTCTCAAGCTGCAGTCCACGGGGTATGGTTCTGGATGGT < 41bp 0.593460800273281 0.852600740994742 0.4447679 0.9180327 prediction 0.518279881442921 Functional Gain - MSTO2P ENSG00000203761 ncRNA_exonic Human unprocessed_pseudogene chr1:155719386 chr1:155719387 . . 0 22 hm5C_associated_SNPs_106657 0 0 0 0 2 unknown 0.500276026321344 0.500233121604701 0.8360654 0 hm5C_site_59802 DeepMRMD:0.8360654;iRNA_m5C:0 59803 chr17 34958290 34958290 1 + C G rs150494595 34958289 + 34958269 34958309 41 GACCTGGGGTCGCCTCGTCACCCGTCATTTCTCCCATGCAG GACCTGGGGTCGCCTCGTCACGCGTCATTTCTCCCATGCAG < 41bp 0.576283472522061 0.835423323802 0.04183376 0.2155816 prediction 0.518279702559878 Functional Gain - MRM1 ENSG00000129282 CDS Human other chr17:34958289 chr17:34958290 synonymous SNV . 0 22 hm5C_associated_SNPs_106658 0 0 1 0 0 nucleolus 0.500234573440454 0.500231716121154 0 0 hm5C_site_59803 DeepMRMD:0;iRNA_m5C:0 59804 chrX 90690699 90690699 1 + T A LIHC 90690695 + 90690675 90690715 41 GCTCTATAAGAAGTTCAGGCCTGCTGGCCCTCTGCGATTCA GCTCTATAAGAAGTTCAGGCCTGCAGGCCCTCTGCGATTCA < 41bp 0.606021732630009 0.865160343038666 0.15028271 0.17176604 prediction 0.518277220817314 Functional Gain - PABPC5 ENSG00000174740 CDS Human protein_coding chrX:90690695 chrX:90690699 synonymous SNV . 0 25 hm5C_associated_SNPs_106659 0 0 0 0 0 exosome 0.500231642311323 0.50023164408542 0 3.54819240655502e-09 hm5C_site_59804 DeepMRMD:0;iRNA_m5C:3.54819240655502e-09 59805 chr7 129929521 129929521 1 + C G OV 129929520 + 129929500 129929540 41 GCCAGCCCGTCAGATCCTGCCCACAGCCGAGGAGACCTGGC GCCAGCCCGTCAGATCCTGCCGACAGCCGAGGAGACCTGGC < 41bp 0.592705543808515 0.851829662992094 0.027961433 0.29983157 prediction 0.518248238367158 Functional Gain - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129929520 chr7:129929521 synonymous SNV . 0 22 hm5C_associated_SNPs_106660 0 0 0 0 0 exosome 0.500231644076521 0.500231633534999 0 0 hm5C_site_59805 DeepMRMD:0;iRNA_m5C:0 59806 chr22 50962505 50962505 1 + C G HNSC 50962504 + 50962484 50962524 41 GAAGTCAGCCTTGCAGCGAGCCCGGCCTCTGTGATCCAGCA GAAGTCAGCCTTGCAGCGAGCGCGGCCTCTGTGATCCAGCA < 41bp 0.472197818188526 0.75911232919436 0.37959352 0.8624016 prediction 0.518224658388721 Functional Gain - SCO2 ENSG00000130489 CDS Human protein_coding chr22:50962504 chr22:50962505 synonymous SNV . 0 22 hm5C_associated_SNPs_106661 0 0 0 0 0 Ribosome 0.500231643219064 0.500231643921343 0.7248032 1.40455957975405e-09 hm5C_site_59806 DeepMRMD:0.7248032;iRNA_m5C:1.40455957975405e-09 59807 chr4 85888117 85888117 1 + C G rs551538903 85888116 + 85888096 85888136 41 AGACGCGCCTCTTCCCCGCCCCGCGCCCCTCTCTCCTCTCC AGACGCGCCTCTTCCCCGCCCGGCGCCCCTCTCTCCTCTCC < 41bp 0.560112601227217 0.819223792689429 0.05758664 0.28226855 prediction 0.518222382924426 Functional Gain - WDFY3-AS2 ENSG00000180769 ncRNA_exonic Human processed_transcript chr4:85888116 chr4:85888117 . . 0 22 hm5C_associated_SNPs_106662 0 0 0 0 0 unknown 0.500231643917294 0.500231643921093 0 7.5968120683001e-12 hm5C_site_59807 DeepMRMD:0;iRNA_m5C:7.5968120683001e-12 59808 chr1 28206557 28206557 1 + T C PAAD 28206555 + 28206535 28206575 41 CCCCAGTATGAGATCCAAGCCATCATGCACAGTGAGTTGCC CCCCAGTATGAGATCCAAGCCACCATGCACAGTGAGTTGCC < 41bp 0.494085781862919 0.759106208681936 0.09295541 0.055122435 prediction 0.518212417363873 Functional Gain - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28206555 chr1:28206557 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_106663 0 0 0 0 1 chromatin 0.500231643923006 0.500231643968962 0 9.19122555842478e-11 hm5C_site_59808 DeepMRMD:0;iRNA_m5C:9.19122555842478e-11 59809 chr20 44567730 44567730 1 + C G HNSC 44567729 + 44567709 44567749 41 ATCAGAGCCAGCCCTGTTCTCCAAAGCCAATCCGCCTGGTT ATCAGAGCCAGCCCTGTTCTCGAAAGCCAATCCGCCTGGTT < 41bp 0.594059592375726 0.853160150353443 0.59271693 0.9192686 prediction 0.518201115955434 Functional Gain - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44567729 chr20:44567730 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_106664 0 0 1 0 1 chromatin 0.500231644452561 0.500231643920274 0.65310334 0 hm5C_site_59809 DeepMRMD:0.65310334;iRNA_m5C:0 59810 chr11 5475467 5475467 1 + C A ACC 5475463 + 5475443 5475483 41 TGTCACATATCCTGGCTGTACTTGCATTTTATGTGCCAATG TGTCACATATCCTGGCTGTACTTGAATTTTATGTGCCAATG < 41bp 0.379585535813651 0.759091132692784 0.15213224 0.18982434 prediction 0.518182265385568 Functional Gain - OR51I2 ENSG00000187918 CDS Human protein_coding chr11:5475463 chr11:5475467 nonsynonymous SNV 0.555 1 25 hm5C_associated_SNPs_106665 0 0 0 0 0 nucleus 0.50023261257013 0.50027437122696 0 8.35173136590761e-05 hm5C_site_59810 DeepMRMD:0;iRNA_m5C:8.35173136590761e-05 59811 chr14 101138605 101138605 1 + C G rs11849923 101138604 + 101138584 101138624 41 TGGCCAAGGTCCTGCATGGGCCTGGGTGACCCCTGCAGAAG TGGCCAAGGTCCTGCATGGGCGTGGGTGACCCCTGCAGAAG < 41bp 0.568595070028719 0.82768084028008 0.27789468 0.41300613 prediction 0.518171540502722 Functional Gain - LINC00523 ENSG00000196273 ncRNA_exonic Human lincRNA chr14:101138604 chr14:101138605 . . 0 22 hm5C_associated_SNPs_106666 0 0 0 0 0 unknown 0.500231643927692 0.500231644709949 0 1.56451473998231e-09 hm5C_site_59811 DeepMRMD:0;iRNA_m5C:1.56451473998231e-09 59812 chr12 133197653 133197653 1 + C T COAD 133197652 + 133197632 133197672 41 CTGCCTGCATCGGAGTGCAACCCCAAGTACTCCTTCCGGAG CTGCCTGCATCGGAGTGCAACTCCAAGTACTCCTTCCGGAG < 41bp 0.492046143571387 0.75908515669642 0.5161412 0.96065867 prediction 0.51817031339284 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197652 chr12:133197653 nonsynonymous SNV 0.950 4 22 hm5C_associated_SNPs_106667 0 0 0 0 1 exosome 0.500231643925326 0.500232764952969 0.88903494 2.24205528565058e-06 hm5C_site_59812 DeepMRMD:0.88903494;iRNA_m5C:2.24205528565058e-06 59813 chr21 47321005 47321005 1 + T C STAD 47321003 + 47320983 47321023 41 GCCATCTTCAAGGCCTTTGCCATGATCGCATACAAGTTTGA GCCATCTTCAAGGCCTTTGCCACGATCGCATACAAGTTTGA < 41bp 0.477431882140076 0.759082191101893 0.31692624 0.36341372 prediction 0.518164382203785 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47321003 chr21:47321005 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_106668 0 0 0 0 1 nucleoplasm 0.500236992046078 0.500265147665093 0 5.63112380300712e-05 hm5C_site_59813 DeepMRMD:0;iRNA_m5C:5.63112380300712e-05 Systolic blood pressure 59814 chr15 78792487 78792487 1 + C G rs113739008 78792483 + 78792463 78792503 41 ATTACAGGTGTGAGCCACCACACCCGGCCTATATTGTTTTG ATTACAGGTGTGAGCCACCACACCGGGCCTATATTGTTTTG < 41bp 0.503728047295975 0.762807690160562 0.03198114 0.109134704 prediction 0.518159285729174 Functional Gain - IREB2 ENSG00000136381 UTR3 Human protein_coding chr15:78792483 chr15:78792487 . . 0 25 hm5C_associated_SNPs_106669 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59814 DeepMRMD:0;iRNA_m5C:0 59815 chr17 33454165 33454165 1 + C A LUAD 33454161 + 33454141 33454181 41 CCATCAAATTAGCTGTGACCCAGCCCAACAGCAGCTTCTTT CCATCAAATTAGCTGTGACCCAGCACAACAGCAGCTTCTTT < 41bp 0.34016052064038 0.759074062539986 0.26258385 0.38247782 prediction 0.518148125079971 Functional Gain - FNDC8 ENSG00000073598 CDS Human protein_coding chr17:33454161 chr17:33454165 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106670 0 0 0 0 0 exosome 0.500231643921014 0.500231644419603 0 9.97179228079403e-10 hm5C_site_59815 DeepMRMD:0;iRNA_m5C:9.97179228079403e-10 59816 chr1 212793940 212793940 1 + T G rs180985365 212793937 + 212793917 212793957 41 CAGCTGTGAGAAGTCACTCACACTGGCCACAAGGACGCTGG CAGCTGTGAGAAGTCACTCACACGGGCCACAAGGACGCTGG < 41bp 0.447463111327548 0.759070934368447 0.11295828 0.4144473 prediction 0.518141868736893 Functional Gain - ATF3 ENSG00000162772 UTR3 Human protein_coding chr1:212793937 chr1:212793940 . . 0 24 hm5C_associated_SNPs_106671 0 0 1 2 0 Cytoplasm 0.50049501093563 0.500231655464912 0 0 hm5C_site_59816 DeepMRMD:0;iRNA_m5C:0 59817 chr14 20612261 20612261 1 + T A LUAD 20612257 + 20612237 20612277 41 CTCGTTGTGATGGCCTTTGACCGCTACATCGCCATCTGCCG CTCGTTGTGATGGCCTTTGACCGCAACATCGCCATCTGCCG < 41bp 0.456345938505203 0.759050018068856 0.09095228 0.114693046 prediction 0.518100036137713 Functional Gain - OR4N5 ENSG00000184394 CDS Human protein_coding chr14:20612257 chr14:20612261 nonsynonymous SNV 0.833 3 25 hm5C_associated_SNPs_106672 0 0 0 0 0 unknown 0.500231263110345 0.500231642303953 0 7.58387217247858e-07 hm5C_site_59817 DeepMRMD:0;iRNA_m5C:7.58387217247858e-07 59818 chr4 119552101 119552101 1 + C G UCEC 119552097 + 119552077 119552117 41 ATGCTTCACAAGGGCCTTTCCAGGCCCAACTTTCGTCTCAT ATGCTTCACAAGGGCCTTTCCAGGGCCAACTTTCGTCTCAT < 41bp 0.563564585889373 0.822612370674161 0.75715375 0.92086565 prediction 0.518095569569576 Functional Gain - LOC729218 ENSG00000260404 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:119552097 chr4:119552101 . . 0 25 hm5C_associated_SNPs_106673 0 0 0 0 0 unknown 0.500231643921091 0.500231643921099 0.3274238 1.55431223447522e-14 hm5C_site_59818 DeepMRMD:0.3274238;iRNA_m5C:1.55431223447522e-14 59819 chr11 3428692 3428692 1 + T G UCEC 3428690 + 3428670 3428710 41 CCCCCCCAGGCCTTTATACCCTTCAGATGCCAAATCTAAGA CCCCCCCAGGCCTTTATACCCTGCAGATGCCAAATCTAAGA < 41bp 0.425772665185737 0.759046428876831 0.29623118 0.2712626 prediction 0.518092857753662 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3428690 chr11:3428692 . . 0 23 hm5C_associated_SNPs_106674 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59819 DeepMRMD:0;iRNA_m5C:0 59820 chr5 72286600 72286600 1 + C A COAD 72286596 + 72286576 72286616 41 AAACCATTCAGAGCATAACTCAGGCCCTCCAGAAATCCAAG AAACCATTCAGAGCATAACTCAGGACCTCCAGAAATCCAAG < 41bp 0.361735919465611 0.759043057187626 0.88375086 0.6843527 prediction 0.518086114375251 Functional Gain - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72286596 chr5:72286600 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_106675 0 0 1 0 2 chromatin 0.500231666985253 0.50023164392111 0 0 hm5C_site_59820 DeepMRMD:0;iRNA_m5C:0 59821 chr10 124273730 124273730 1 + T C UCEC 124273728 + 124273708 124273748 41 GGTGGTCTCAAGGAAAACGACGTCATAATCAGCATCAATGG GGTGGTCTCAAGGAAAACGACGCCATAATCAGCATCAATGG < 41bp 0.521877482562771 0.780916705992589 0.02328369 0.092250764 prediction 0.518078446859637 Functional Gain - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124273728 chr10:124273730 nonsynonymous SNV 0.922 4 23 hm5C_associated_SNPs_106676 0 0 0 0 1 Ribosome 0.500231653030844 0.500232074830667 0 8.43599645694582e-07 hm5C_site_59821 DeepMRMD:0;iRNA_m5C:8.43599645694582e-07 59822 chr19 58908283 58908283 1 + C G rs187505845 58908282 + 58908262 58908302 41 CTGACCTGGACACGGCCCTGCCAGGAACTGCAGAAGATGCG CTGACCTGGACACGGCCCTGCGAGGAACTGCAGAAGATGCG < 41bp 0.484315192156058 0.759038690243317 0.51585746 0.8757951 prediction 0.518077380486635 Functional Gain - RNF225 ENSG00000269855 CDS Human protein_coding chr19:58908282 chr19:58908283 nonsynonymous SNV 0.051 0 22 hm5C_associated_SNPs_106677 0 0 0 0 0 exosome 0.500231637519339 0.500231638713377 0.71987528 2.38807640329242e-09 hm5C_site_59822 DeepMRMD:0.71987528;iRNA_m5C:2.38807640329242e-09 59823 chr14 24844908 24844908 1 + T A LIHC 24844904 + 24844884 24844924 41 AGGAGGAGGCCACAGTGAACCGACTGCAGAGCAACGAGGTA AGGAGGAGGCCACAGTGAACCGACAGCAGAGCAACGAGGTA < 41bp 0.535787136979334 0.794824069124849 0.38236737 0.19373918 prediction 0.518073864291029 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24844904 chr14:24844908 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_106678 0 0 0 0 2 cytosol 0.500231643920539 0.500231643887109 0 0 hm5C_site_59823 DeepMRMD:0;iRNA_m5C:0 59824 chr19 17983302 17983302 1 + C G LUSC 17983301 + 17983281 17983321 41 CCGGCGCCTGGCGGCCCTGCCCGTGGGCCTGTCGCTGTCTG CCGGCGCCTGGCGGCCCTGCCGGTGGGCCTGTCGCTGTCTG < 41bp 0.591475063038973 0.850511197592676 0.8521787 0.9161289 prediction 0.518072269107405 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17983301 chr19:17983302 synonymous SNV . 0 22 hm5C_associated_SNPs_106679 0 0 0 0 0 Nucleus 0.500231643922144 0.500231643643075 0.1279004 0 hm5C_site_59824 DeepMRMD:0.1279004;iRNA_m5C:0 59825 chr5 140480321 140480321 1 + T A rs183428005 140480317 + 140480297 140480337 41 GGAGGGTCTCTGGCTGGGTCCGAGTCAAGACGCTATTCTGT GGAGGGTCTCTGGCTGGGTCCGAGACAAGACGCTATTCTGT < 41bp 0.552289342771583 0.811318801894357 0.49547052 0.71112525 prediction 0.518058918245547 Functional Gain - PCDHB3 ENSG00000113205 CDS Human protein_coding chr5:140480317 chr5:140480321 nonsynonymous SNV 0.022 0 25 hm5C_associated_SNPs_106680 0 0 0 0 0 exosome 0.500231644123452 0.500231653269507 0.4222505 1.82921098268451e-08 hm5C_site_59825 DeepMRMD:0.4222505;iRNA_m5C:1.82921098268451e-08 59826 chr6 147680410 147680410 1 + C T UCEC 147680409 + 147680389 147680429 41 TGTCATTGCACTGAACCTTCCCCCAGGGGGAGAGCAAAGAC TGTCATTGCACTGAACCTTCCTCCAGGGGGAGAGCAAAGAC < 41bp 0.481905517059608 0.759029457716355 0.06255856 0.93498266 prediction 0.51805891543271 Functional Gain - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147680409 chr6:147680410 synonymous SNV . 0 22 hm5C_associated_SNPs_106681 0 0 1 0 1 Nucleus 0.500231643973426 0.500231652062844 0.86996532 1.61788349384295e-08 hm5C_site_59826 DeepMRMD:0.86996532;iRNA_m5C:1.61788349384295e-08 59827 chr2 233246361 233246361 1 + C A LUAD 233246357 + 233246337 233246377 41 AGCGCACGTCATGGCCTTCGCCGCCTGCCTGGAGCCCTACA AGCGCACGTCATGGCCTTCGCCGCATGCCTGGAGCCCTACA < 41bp 0.367867003475602 0.759027814138132 0.26874644 0.41574666 prediction 0.518055628276264 Functional Gain - ALPP ENSG00000163283 CDS Human protein_coding chr2:233246357 chr2:233246361 synonymous SNV . 0 25 hm5C_associated_SNPs_106682 0 0 0 0 0 Endoplasmic reticulum 0.500231696689148 0.500231663240967 0 0 hm5C_site_59827 DeepMRMD:0;iRNA_m5C:0 59828 chr17 701461 701461 1 + C G rs95434 701460 + 701440 701480 41 ATCGTGCCACTGCACTCTAGCCGGGGCGACAGAGCGAGACT ATCGTGCCACTGCACTCTAGCGGGGGCGACAGAGCGAGACT < 41bp 0.468017202061087 0.759024122670044 0.90969753 0.94804144 prediction 0.518048245340088 Functional Gain - MRM3;NXN ENSG00000171861;ENSG00000167693 intergenic Human other chr17:701460 chr17:701461 . . 0 22 hm5C_associated_SNPs_106683 0 0 0 0 0 unknown 0.500236106698476 0.500231643967534 0.0766878200000001 0 hm5C_site_59828 DeepMRMD:0.0766878200000001;iRNA_m5C:0 59829 chr11 55873137 55873137 1 + C A LUAD 55873133 + 55873113 55873153 41 ATATTCATTATTGTTGGTTCCACCCTGATGGTGTCCCTTTT ATATTCATTATTGTTGGTTCCACCATGATGGTGTCCCTTTT < 41bp 0.372149297252387 0.759023626421182 0.005114436 0.029369414 prediction 0.518047252842364 Functional Gain - OR8H2 ENSG00000181767 CDS Human protein_coding chr11:55873133 chr11:55873137 nonsynonymous SNV 0.012 1 25 hm5C_associated_SNPs_106684 0 0 0 0 0 unknown 0.500231643920454 0.500231643846595 0 0 hm5C_site_59829 DeepMRMD:0;iRNA_m5C:0 59830 chr19 6857209 6857209 1 + C G rs55886724 6857205 + 6857185 6857225 41 GCCAGGGGCTGTGACAGCTCCCGGCGGGTGGAGACTTTGGG GCCAGGGGCTGTGACAGCTCCCGGGGGGTGGAGACTTTGGG < 41bp 0.544884894936945 0.803900132628066 0.8692092 0.91168594 prediction 0.518030475382242 Functional Gain - VAV1 ENSG00000141968 UTR3 Human protein_coding chr19:6857205 chr19:6857209 . . 0 25 hm5C_associated_SNPs_106685 0 0 1 0 0 Endoplasmic reticulum 0.500231643799811 0.500231643921469 0.08495348 2.43317144210664e-10 hm5C_site_59830 DeepMRMD:0.08495348;iRNA_m5C:2.43317144210664e-10 59831 chr10 51585083 51585083 1 + T C STAD 51585081 + 51585061 51585101 41 AGGATTGGCTTGTCCAGAACCATCAGGACCCATGTAAGGTA AGGATTGGCTTGTCCAGAACCACCAGGACCCATGTAAGGTA < 41bp 0.563382372720287 0.822392263338936 0.11337292 0.24578685 prediction 0.518019781237296 Functional Gain - NCOA4 ENSG00000138293 CDS Human other chr10:51585081 chr10:51585083 synonymous SNV . 0 23 hm5C_associated_SNPs_106686 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921076 0 0 hm5C_site_59831 DeepMRMD:0;iRNA_m5C:0 59832 chrX 54837460 54837460 1 + T A UCEC 54837456 + 54837436 54837476 41 AGCCTTGCTCTCCCTGAGATCACCTAAAGCCCGTAGGGGCA AGCCTTGCTCTCCCTGAGATCACCAAAAGCCCGTAGGGGCA < 41bp 0.621195497210813 0.880204041548717 0.23922771 0.32969746 prediction 0.518017088675808 Functional Gain - MAGED2 ENSG00000102316 CDS Human protein_coding chrX:54837456 chrX:54837460 synonymous SNV . 0 25 hm5C_associated_SNPs_106687 0 0 1 0 0 chromatin 0.500231643921093 0.500231643921092 0 0 hm5C_site_59832 DeepMRMD:0;iRNA_m5C:0 59833 chr11 7535337 7535337 1 + T G rs76560573 7535335 + 7535315 7535355 41 CTGAGCCGCCCGGAGAGGAGCCTCGGCCCCGTACCCAGGTC CTGAGCCGCCCGGAGAGGAGCCGCGGCCCCGTACCCAGGTC < 41bp 0.41152599302119 0.75900518963224 0.44387925 0.5691589 prediction 0.518010379264479 Functional Gain - PPFIBP2 ENSG00000166387 UTR5 Human protein_coding chr11:7535335 chr11:7535337 . . 0 23 hm5C_associated_SNPs_106688 0 0 0 0 1 Cytosol 0.5002316439214 0.500231643923271 0.1383178 3.74189568219663e-12 hm5C_site_59833 DeepMRMD:0.1383178;iRNA_m5C:3.74189568219663e-12 59834 chr9 100395904 100395904 1 + G C rs544887973 100395908 - 100395888 100395928 41 CCCCCTCGGGCTGCCTCCGCCTGCCGGCTACTTCTTTCTCC CCCCCTCGGGCTGCCTCCGCCTGCGGGCTACTTCTTTCTCC < 41bp 0.527882144354227 0.786854512927216 0.28156894 0.32108498 prediction 0.517944737145978 Functional Gain - NCBP1;TSTD2 ENSG00000136925 UTR5 Human protein_coding chr9:100395908 chr9:100395904 . . 0 25 hm5C_associated_SNPs_106689 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59834 DeepMRMD:0;iRNA_m5C:0 59835 chr17 55075815 55075815 1 + T C DLBC 55075813 + 55075793 55075833 41 AGCCAGCTCATGAATGGCCCCATCAGAAAGAAGCTCAAAAT AGCCAGCTCATGAATGGCCCCACCAGAAAGAAGCTCAAAAT < 41bp 0.476619735851119 0.758970262870852 0.007440537 0.013214856 prediction 0.517940525741704 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55075813 chr17:55075815 nonsynonymous SNV 0.999 5 23 hm5C_associated_SNPs_106690 0 0 0 0 3 Ribosome 0.500231645476921 0.50023165350489 0 1.6055937468451e-08 hm5C_site_59835 DeepMRMD:0;iRNA_m5C:1.6055937468451e-08 59836 chr16 55563839 55563839 1 + T C UCEC 55563837 + 55563817 55563857 41 TGAAATAATAAAGCGAACAACATCAGGAGGAGAATGGCCCC TGAAATAATAAAGCGAACAACACCAGGAGGAGAATGGCCCC < 41bp 0.475240160100309 0.7589699844726 0.3046679 0.585406 prediction 0.517939968945199 Functional Gain - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55563837 chr16:55563839 nonsynonymous SNV 0.829 3 23 hm5C_associated_SNPs_106691 0 0 0 0 2 Ribosome 0.500231643921102 0.500231643921098 0.170812 0 hm5C_site_59836 DeepMRMD:0.170812;iRNA_m5C:0 59837 chr1 204091106 204091106 1 + C A STAD 204091102 + 204091082 204091122 41 CTGGGGCCATGGCCACCCACCACCCCCTGCAGGTACCGCCC CTGGGGCCATGGCCACCCACCACCACCTGCAGGTACCGCCC < 41bp 0.328095151853001 0.758966157954722 0.20884672 0.17823923 prediction 0.517932315909443 Functional Gain - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204091102 chr1:204091106 nonsynonymous SNV 0.974 3 25 hm5C_associated_SNPs_106692 0 0 1 0 2 nucleus 0.500231643904332 0.500231643921092 0 3.35214078717172e-11 hm5C_site_59837 DeepMRMD:0;iRNA_m5C:3.35214078717172e-11 59838 chr18 54814375 54814375 1 + C G rs7237143 54814371 + 54814351 54814391 41 CGGTCTGGAGCTGGCCTCCCCCACCGCCGCCCCAACCACCG CGGTCTGGAGCTGGCCTCCCCCACGGCCGCCCCAACCACCG < 41bp 0.497228113363014 0.758950205637795 0.17954823 0.20014739 prediction 0.517900411275589 Functional Gain - BOD1L2 ENSG00000228075 UTR5 Human protein_coding chr18:54814371 chr18:54814375 . . 0 25 hm5C_associated_SNPs_106693 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59838 DeepMRMD:0;iRNA_m5C:0 59839 chr6 54735391 54735391 1 + T C STAD 54735389 + 54735369 54735409 41 CCATATGTGATGCCCGGACTCTTAGGGGGCACCCATATAGA CCATATGTGATGCCCGGACTCTCAGGGGGCACCCATATAGA < 41bp 0.521327627198206 0.780277789970557 0.080073655 0.03165829 prediction 0.517900325544701 Functional Gain - FAM83B ENSG00000168143 CDS Human protein_coding chr6:54735389 chr6:54735391 nonsynonymous SNV 0.969 0 23 hm5C_associated_SNPs_106694 0 0 0 0 1 exosome 0.500231643921092 0.500231643921084 0 0 hm5C_site_59839 DeepMRMD:0;iRNA_m5C:0 59840 chr6 153043343 153043343 1 + C T KIRC 153043342 + 153043322 153043362 41 AGTGGGCCTTTCAACACCGCCCCCACCTGCCTATGAGTCCA AGTGGGCCTTTCAACACCGCCTCCACCTGCCTATGAGTCCA < 41bp 0.507043498076041 0.765990346961871 0.007066846 0.90616536 prediction 0.517893697771659 Functional Gain - MYCT1 ENSG00000120279 CDS Human protein_coding chr6:153043342 chr6:153043343 synonymous SNV . 0 22 hm5C_associated_SNPs_106695 0 0 0 0 0 Cytosol 0.500231644585279 0.500231643924071 0.81233072 0 hm5C_site_59840 DeepMRMD:0.81233072;iRNA_m5C:0 59841 chr8 39840251 39840251 1 + C A LUAD 39840247 + 39840227 39840267 41 CCCTCCTATCCTGGTCCACTCAGACTTGGTGCTGACGAACT CCCTCCTATCCTGGTCCACTCAGAATTGGTGCTGACGAACT < 41bp 0.354162227187242 0.758943241539807 0.14176741 0.46745548 prediction 0.517886483079615 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39840247 chr8:39840251 nonsynonymous SNV 0.985 4 25 hm5C_associated_SNPs_106696 0 0 0 4 2 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_59841 DeepMRMD:0;iRNA_m5C:0 59842 chr16 1825152 1825152 1 + C A LUAD 1825148 + 1825128 1825168 41 CCTGTGGTACCGCTCACTCTCATGCCCACAGCAGGGCTGGC CCTGTGGTACCGCTCACTCTCATGACCACAGCAGGGCTGGC < 41bp 0.369642365849491 0.758924969355349 0.650116 0.7517178 prediction 0.517849938710698 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825148 chr16:1825152 stopgain . 0 25 hm5C_associated_SNPs_106697 0 0 0 0 1 chromatin 0.500226578752519 0.500231635045247 0.2032036 1.01125854559125e-05 hm5C_site_59842 DeepMRMD:0.2032036;iRNA_m5C:1.01125854559125e-05 59843 chr15 99572721 99572721 1 + C A rs7171069 99572717 + 99572697 99572737 41 GAGTCCCTGGAGGGAACATTCTGGCATCTGGCTGTGAGCTG GAGTCCCTGGAGGGAACATTCTGGAATCTGGCTGTGAGCTG < 41bp 0.41811727781442 0.75890701903392 0.5739951 0.48709285 prediction 0.517814038067839 Functional Gain - LUNAR1 ENSG00000259475 ncRNA_intronic Human antisense chr15:99572717 chr15:99572721 . . 0 25 hm5C_associated_SNPs_106698 0 0 0 0 0 unknown 0.50023164393375 0.500231643921109 0 0 hm5C_site_59843 DeepMRMD:0;iRNA_m5C:0 59844 chr2 99013400 99013400 1 + C G SARC 99013399 + 99013379 99013419 41 CGATCTCATGGAGGCCCTCACCGAGTACCCCGAAGCCAAGA CGATCTCATGGAGGCCCTCACGGAGTACCCCGAAGCCAAGA < 41bp 0.431033742933284 0.758882220537859 0.81685126 0.917611 prediction 0.517764441075718 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:99013399 chr2:99013400 synonymous SNV . 0 22 hm5C_associated_SNPs_106699 0 0 0 0 0 nucleus 0.500231643921094 0.500231643921092 0.20151948 0 hm5C_site_59844 DeepMRMD:0.20151948;iRNA_m5C:0 59845 chr22 24121476 24121476 1 + C A TGCT 24121472 + 24121452 24121492 41 CCTGCCACGCAGGAAGCCCCCCGGCCTGCCAGCAGCCTCAG CCTGCCACGCAGGAAGCCCCCCGGACTGCCAGCAGCCTCAG < 41bp 0.646353305019935 0.905194778566091 0.40979287 0.49760276 prediction 0.517682947092312 Functional Gain - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24121472 chr22:24121476 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_106700 0 0 1 0 1 Endoplasmic reticulum 0.500231643921093 0.500231643921092 0 0 hm5C_site_59845 DeepMRMD:0;iRNA_m5C:0 59846 chr5 154181877 154181877 1 + C A COAD 154181873 + 154181853 154181893 41 GTGCCAAGATGAGCGCCGAACTGGCCAAGGTCATTAATGAT GTGCCAAGATGAGCGCCGAACTGGACAAGGTCATTAATGAT < 41bp 0.334419541544025 0.758833669421426 0.18786249 0.2660848 prediction 0.517667338842851 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154181873 chr5:154181877 nonsynonymous SNV 0.983 2 25 hm5C_associated_SNPs_106701 0 0 1 0 1 Cytosol 0.500235500612207 0.500231630701676 0 0 hm5C_site_59846 DeepMRMD:0;iRNA_m5C:0 59847 chr12 53517601 53517601 1 + C A UCEC 53517600 + 53517580 53517620 41 CTGTTTCTAGGCCAGGGAATCCAGGTCAGCCTGTACTGCCA CTGTTTCTAGGCCAGGGAATCAAGGTCAGCCTGTACTGCCA < 41bp 0.501567083281379 0.760392987355124 0.91131294 0.9256803 prediction 0.51765180814749 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53517600 chr12:53517601 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_106702 0 0 0 0 2 cytosol 0.500231643921092 0.500231643921092 0.0287347200000001 0 hm5C_site_59847 DeepMRMD:0.0287347200000001;iRNA_m5C:0 59848 chr3 6903174 6903174 1 + C A rs116111799 6903170 + 6903150 6903190 41 GTGCGCGCTGGCGGCGGCGGCGCGCGGCCAGGAGATGTACG GTGCGCGCTGGCGGCGGCGGCGCGAGGCCAGGAGATGTACG < 41bp 0.54713559132455 0.805959596343314 0.8610333 0.9152987 prediction 0.517648010037528 Functional Gain - GRM7 ENSG00000196277 CDS Human protein_coding chr3:6903170 chr3:6903174 synonymous SNV . 0 25 hm5C_associated_SNPs_106703 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643921089 0.1085308 0 hm5C_site_59848 DeepMRMD:0.1085308;iRNA_m5C:0 59849 chr12 50157147 50157147 1 + T G rs3782324 50157144 + 50157124 50157164 41 GGAAAGAAGTTCAGTGGTCCCATTGTTAACTCAGCCTCAAA GGAAAGAAGTTCAGTGGTCCCATGGTTAACTCAGCCTCAAA < 41bp 0.365894116300423 0.758813228046218 0.041101277 0.27360433 prediction 0.517626456092436 Functional Gain - TMBIM6 ENSG00000139644 UTR3 Human protein_coding chr12:50157144 chr12:50157147 . . 0 24 hm5C_associated_SNPs_106704 0 0 1 1 0 Ribosome 0.500231740769875 0.5002316439336 0 0 hm5C_site_59849 DeepMRMD:0;iRNA_m5C:0 59850 chr7 73118368 73118368 1 + C G rs530041734 73118364 + 73118344 73118384 41 ACTCAGCAGCTGCCTCGGGCCACCCGCCTCGGGCCCCTAAC ACTCAGCAGCTGCCTCGGGCCACCGGCCTCGGGCCCCTAAC < 41bp 0.470080422389344 0.758811726673346 0.05385703 0.16086692 prediction 0.517623453346692 Functional Gain - STX1A ENSG00000071462 UTR3 Human protein_coding chr7:73118364 chr7:73118368 . . 0 25 hm5C_associated_SNPs_106705 0 0 1 0 0 Endoplasmic reticulum 0.500231643922102 0.500231643949865 0 5.5525362085973e-11 hm5C_site_59850 DeepMRMD:0;iRNA_m5C:5.5525362085973e-11 59851 chr12 120741693 120741693 1 + T C LGG 120741691 + 120741671 120741711 41 CAGCGGTACTGGGCGAGAAACTTCGTAGGCTGGCCTCAATT CAGCGGTACTGGGCGAGAAACTCCGTAGGCTGGCCTCAATT < 41bp 0.553153584475359 0.811947525424668 0.690811 0.9090122 prediction 0.517587881898617 Functional Gain - SIRT4 ENSG00000089163 CDS Human protein_coding chr12:120741691 chr12:120741693 nonsynonymous SNV 0.882 3 23 hm5C_associated_SNPs_106706 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.4364024 0 hm5C_site_59851 DeepMRMD:0.4364024;iRNA_m5C:0 59852 chr19 48965218 48965218 1 + C G ACC 48965217 + 48965197 48965237 41 CTACCTGAGCGACCTGTTCACCACATGCGTGGACGTGCGCT CTACCTGAGCGACCTGTTCACGACATGCGTGGACGTGCGCT < 41bp 0.591626403080061 0.850417235452944 0.41207653 0.6484742 prediction 0.517581664745767 Functional Gain - KCNJ14 ENSG00000182324 CDS Human protein_coding chr19:48965217 chr19:48965218 synonymous SNV . 0 22 hm5C_associated_SNPs_106707 0 0 1 0 0 chromatin 0.500268195914384 0.500306627159991 0.2969484 7.68624912139693e-05 hm5C_site_59852 DeepMRMD:0.2969484;iRNA_m5C:7.68624912139693e-05 59853 chr16 29845345 29845345 1 + C T COAD 29845344 + 29845324 29845364 41 CAGGCTCTGCGGCTCAGGGCCCGCAAGGAGTGCTGGGACCG CAGGCTCTGCGGCTCAGGGCCTGCAAGGAGTGCTGGGACCG < 41bp 0.497766409429554 0.758789383335064 0.13202319 0.2659198 prediction 0.517578766670128 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29845344 chr16:29845345 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_106708 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643937975 0 3.376499080332e-11 hm5C_site_59853 DeepMRMD:0;iRNA_m5C:3.376499080332e-11 59854 chr12 113629450 113629450 1 + C G SKCM 113629449 + 113629429 113629469 41 ATGTCCCCAGCACTGGTCATCCAGCCACCAGTGCCCCCCAC ATGTCCCCAGCACTGGTCATCGAGCCACCAGTGCCCCCCAC < 41bp 0.446489205098546 0.758780434385078 0.07966843 0.42511857 prediction 0.517560868770156 Functional Gain - RITA1 ENSG00000139405 CDS Human protein_coding chr12:113629449 chr12:113629450 nonsynonymous SNV 0.013 1 22 hm5C_associated_SNPs_106709 0 0 1 0 0 Ribosome 0.500231643920783 0.500231643920331 0 0 hm5C_site_59854 DeepMRMD:0;iRNA_m5C:0 59855 chrX 48459431 48459431 1 + C G rs141738766 48459430 + 48459410 48459450 41 GAGGTGGAGCTTGCAGTGAGCCGAGATGGCACCACTGGGCG GAGGTGGAGCTTGCAGTGAGCGGAGATGGCACCACTGGGCG < 41bp 0.449424114828213 0.758776950067257 0.87769043 0.90847826 prediction 0.517553900134514 Functional Gain - WDR13 ENSG00000101940 intronic Human protein_coding chrX:48459430 chrX:48459431 . . 0 22 hm5C_associated_SNPs_106710 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921098 0.0615756599999999 1.15463194561016e-14 hm5C_site_59855 DeepMRMD:0.0615756599999999;iRNA_m5C:1.15463194561016e-14 59856 chr7 54617843 54617843 1 + C T COAD 54617842 + 54617822 54617862 41 CTCAAGTGGTAGCCAAAATCCCCAAACAAAGTCCACAATCA CTCAAGTGGTAGCCAAAATCCTCAAACAAAGTCCACAATCA < 41bp 0.514129398575809 0.772898488657136 0.31499606 0.5543642 prediction 0.517538180162655 Functional Gain - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54617842 chr7:54617843 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_106711 0 0 0 0 1 exosome 0.500231640360894 0.500231459702468 0.1087284 0 hm5C_site_59856 DeepMRMD:0.1087284;iRNA_m5C:0 59857 chr1 248616358 248616358 1 + T A LUAD 248616354 + 248616334 248616374 41 TCCCCAAGATGCTCCAGGACCTCCTGTCCAAGGACAAGACC TCCCCAAGATGCTCCAGGACCTCCAGTCCAAGGACAAGACC < 41bp 0.592458313917212 0.85121848390285 0.033165395 0.8342351 prediction 0.517520339971276 Functional Gain - OR2T2 ENSG00000196240 CDS Human protein_coding chr1:248616354 chr1:248616358 nonsynonymous SNV 0.886 2 25 hm5C_associated_SNPs_106712 0 0 0 0 0 exosome 0.500231638358599 0.50023154265928 0.6684702 0 hm5C_site_59857 DeepMRMD:0.6684702;iRNA_m5C:0 59858 chr18 9887151 9887151 1 + C G rs146920118 9887150 + 9887130 9887170 41 GCCCAAGCTGGGCAATATTGCCAAGACCTCAGTGAAGCCCA GCCCAAGCTGGGCAATATTGCGAAGACCTCAGTGAAGCCCA < 41bp 0.450471492117024 0.758753321269644 0.17060432 0.7826839 prediction 0.517506642539288 Functional Gain - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9887150 chr18:9887151 synonymous SNV . 0 22 hm5C_associated_SNPs_106713 0 0 0 0 0 exosome 0.500231724752221 0.500231635650638 0.5653678 0 hm5C_site_59858 DeepMRMD:0.5653678;iRNA_m5C:0 59859 chr19 41630672 41630672 1 + C A LUSC 41630668 + 41630648 41630688 41 TCGTGGTGGGACGCGCGCGGCTGCCGGCGCTGAAGGACCGC TCGTGGTGGGACGCGCGCGGCTGCAGGCGCTGAAGGACCGC < 41bp 0.656675223895324 0.915424885414534 0.40635014 0.42014742 prediction 0.517499323038419 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630668 chr19:41630672 nonsynonymous SNV 0.006 3 25 hm5C_associated_SNPs_106714 0 0 0 0 1 exosome 0.500231641158878 0.500231643911968 0 5.50617906824868e-09 hm5C_site_59859 DeepMRMD:0;iRNA_m5C:5.50617906824868e-09 59860 chr16 71950431 71950431 1 + C G LUAD 71950427 + 71950407 71950447 41 TGGCTGCTGGGAAAGATGAACGAGCTCGGATCCGTGTGGAG TGGCTGCTGGGAAAGATGAACGAGGTCGGATCCGTGTGGAG < 41bp 0.533959096259932 0.792708666443309 0.3197735 0.4214708 prediction 0.517499140366754 Functional Gain - IST1 ENSG00000182149 CDS Human protein_coding chr16:71950427 chr16:71950431 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_106715 0 0 1 0 1 Ribosome 0.500231643921076 0.50023164383469 0 0 hm5C_site_59860 DeepMRMD:0;iRNA_m5C:0 59861 chr17 42427851 42427851 1 + T G BRCA 42427848 + 42427828 42427868 41 AGGGTGCACTGCTGTCCGCACGGTGCCTTCTGCGACCTGGT AGGGTGCACTGCTGTCCGCACGGGGCCTTCTGCGACCTGGT < 41bp 0.341940400724706 0.758742673344635 0.04665506 0.80405784 prediction 0.51748534668927 Functional Gain - GRN ENSG00000030582 CDS Human protein_coding chr17:42427848 chr17:42427851 nonsynonymous SNV . 0 24 hm5C_associated_SNPs_106716 0 0 1 0 2 Endoplasmic reticulum 0.500231643921049 0.500231643921093 0.60811568 8.68194405256872e-14 hm5C_site_59861 DeepMRMD:0.60811568;iRNA_m5C:8.68194405256872e-14 59862 chr7 111981074 111981074 1 + C T SKCM 111981073 + 111981053 111981093 41 CTAAACACACTTCGCTGCTCCCCGATAGAAAGACGTGGGAT CTAAACACACTTCGCTGCTCCTCGATAGAAAGACGTGGGAT < 41bp 0.499832309138342 0.75873492523091 0.26318443 0.90237415 prediction 0.517469850461821 Functional Gain - ZNF277 ENSG00000198839 CDS Human protein_coding chr7:111981073 chr7:111981074 nonsynonymous SNV 0.851 4 22 hm5C_associated_SNPs_106717 0 0 0 0 1 chromatin 0.500231643924882 0.500231640333864 0.8047483 0 hm5C_site_59862 DeepMRMD:0.8047483;iRNA_m5C:0 59863 chr7 139026191 139026191 1 + C G LUSC 139026187 + 139026167 139026207 41 GGACTTCTGCGGGAGTTGCGCTACCTGAGCGCGGCCACCGG GGACTTCTGCGGGAGTTGCGCTACGTGAGCGCGGCCACCGG < 41bp 0.540067553323976 0.798795200246869 0.48646778 0.4743207 prediction 0.517455293845786 Functional Gain - C7orf55-LUC7L2;FMC1 ENSG00000164898;ENSG00000269955 CDS Human other chr7:139026187 chr7:139026191 nonsynonymous SNV 0.957 0 25 hm5C_associated_SNPs_106718 0 0 1 0 1 unknown 0.500231643924484 0.50023164391642 0 0 hm5C_site_59863 DeepMRMD:0;iRNA_m5C:0 59864 chr10 50854662 50854662 1 + T A LUSC 50854658 + 50854638 50854678 41 ACACCCACAGGGCACTCCAGCTCCTTCACGGCGGAGGCTAC ACACCCACAGGGCACTCCAGCTCCATCACGGCGGAGGCTAC < 41bp 0.400200765133074 0.758724888929198 0.08700088 0.49727803 prediction 0.517449777858396 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50854658 chr10:50854662 nonsynonymous SNV 0.968 5 25 hm5C_associated_SNPs_106719 0 0 0 0 1 unknown 0.500231644517026 0.50023164593757 0 2.84108847559139e-09 hm5C_site_59864 DeepMRMD:0;iRNA_m5C:2.84108847559139e-09 59865 chr19 1300151 1300151 1 + C A rs189087659 1300147 + 1300127 1300167 41 AGGGGAAACGGCCGAGAGCCCCCCCCCGGAGGCCCGAGGGG AGGGGAAACGGCCGAGAGCCCCCCACCGGAGGCCCGAGGGG < 41bp 0.394658614502548 0.758715737993494 0.05144146 0.046631902 prediction 0.517431475986987 Functional Gain - EFNA2 ENSG00000099617 UTR3 Human protein_coding chr19:1300147 chr19:1300151 . . 0 25 hm5C_associated_SNPs_106720 0 0 0 0 0 exosome 0.500231643921101 0.500231643921092 0 0 hm5C_site_59865 DeepMRMD:0;iRNA_m5C:0 59866 chr1 156882111 156882111 1 + C T SKCM 156882110 + 156882090 156882130 41 ACCATGGTGGGACCTGCCATCCCCAGGATGGGAGCTGTATC ACCATGGTGGGACCTGCCATCTCCAGGATGGGAGCTGTATC < 41bp 0.490840742381579 0.75871564342055 0.19641188 0.9360066 prediction 0.517431286841099 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156882110 chr1:156882111 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_106721 0 0 0 0 2 cytosol 0.500231643281316 0.50023163200669 0.8720132 0 hm5C_site_59866 DeepMRMD:0.8720132;iRNA_m5C:0 59867 chr15 80460483 80460483 1 + C A UCEC 80460482 + 80460462 80460502 41 GGCCCATGGGACAGATGAAACCTGATGACTGTGAGTGACCG GGCCCATGGGACAGATGAAACATGATGACTGTGAGTGACCG < 41bp 0.504378558784403 0.763091485367634 0.16486368 0.17340049 prediction 0.517425853166462 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80460482 chr15:80460483 nonsynonymous SNV 0.755 4 22 hm5C_associated_SNPs_106722 0 0 1 0 2 Cytosol 0.500231643915726 0.500226640747839 0 0 hm5C_site_59867 DeepMRMD:0;iRNA_m5C:0 59868 chr16 3454589 3454589 1 + C G SKCM 3454588 + 3454568 3454608 41 GAGCTTATGACCGGCTGAGCCCCCATCATTGGGAGAAATCC GAGCTTATGACCGGCTGAGCCGCCATCATTGGGAGAAATCC < 41bp 0.567614125132002 0.826322028797015 0.03425291 0.30792233 prediction 0.517415807330027 Functional Gain - ZNF174 ENSG00000103343;ENSG00000262621 CDS Human other chr16:3454588 chr16:3454589 nonsynonymous SNV 0.722 0 22 hm5C_associated_SNPs_106723 0 0 0 0 1 Ribosome 0.500231643902572 0.500231643920361 0 3.55782070471378e-11 hm5C_site_59868 DeepMRMD:0;iRNA_m5C:3.55782070471378e-11 59869 chr1 162569129 162569129 1 + T C rs147708415 162569127 + 162569107 162569147 41 TCATCGATGAGAATGGAGTTCATGAGCTGGTGAAAAATGGT TCATCGATGAGAATGGAGTTCACGAGCTGGTGAAAAATGGT < 41bp 0.505304006182561 0.764011807580093 0.06437802 0.09796211 prediction 0.517415602795064 Functional Gain - UAP1 ENSG00000117143 CDS Human protein_coding chr1:162569127 chr1:162569129 synonymous SNV . 0 23 hm5C_associated_SNPs_106724 0 0 1 0 1 Ribosome 0.500231643909406 0.500231643914309 0 9.80593384269923e-12 hm5C_site_59869 DeepMRMD:0;iRNA_m5C:9.80593384269923e-12 59870 chr10 43610089 43610089 1 + C G rs567241943 43610085 + 43610065 43610105 41 GAGATGACCTTCCGGAGGCCCGCCCAGGCCTTCCCGGTCAG GAGATGACCTTCCGGAGGCCCGCCGAGGCCTTCCCGGTCAG < 41bp 0.472565325744497 0.758705577640871 0.031363875 0.23438758 prediction 0.517411155281742 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43610085 chr10:43610089 nonsynonymous SNV 0.895 3 25 hm5C_associated_SNPs_106725 0 0 0 0 1 Cytosol 0.50023164392117 0.500231644620057 0 1.39777300844912e-09 hm5C_site_59870 DeepMRMD:0;iRNA_m5C:1.39777300844912e-09 59871 chr6 107955660 107955660 1 + C T SKCM 107955659 + 107955639 107955679 41 GTGCCCCTACCGGTGCCCATCCCCATCCCCATCCCTATCCC GTGCCCCTACCGGTGCCCATCTCCATCCCCATCCCTATCCC < 41bp 0.530564542884635 0.789259556702693 0.30696177 0.9717873 prediction 0.517390027636117 Functional Gain - SOBP ENSG00000112320 CDS Human protein_coding chr6:107955659 chr6:107955660 nonsynonymous SNV 0.964 4 22 hm5C_associated_SNPs_106726 0 0 1 0 0 cytosol 0.500231643921092 0.500231643921092 0.9435746 0 hm5C_site_59871 DeepMRMD:0.9435746;iRNA_m5C:0 59872 chr5 36153040 36153040 1 + T G SKCM 36153038 + 36153018 36153058 41 CCCCAGGAACTGCTCTCAAACCTGGGCCACCCGGAGAGCCC CCCCAGGAACTGCTCTCAAACCGGGGCCACCCGGAGAGCCC < 41bp 0.623503057707449 0.882197768382367 0.43081275 0.90606093 prediction 0.517389421349835 Functional Gain - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36153038 chr5:36153040 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_106727 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921093 0.81212186 4.44089209850063e-16 hm5C_site_59872 DeepMRMD:0.81212186;iRNA_m5C:4.44089209850063e-16 59873 chrX 41586424 41586424 1 + T C STAD 41586422 + 41586402 41586442 41 AACAAAAATAGGTAAAAAAACATCAACGCACATCTACCTGT AACAAAAATAGGTAAAAAAACACCAACGCACATCTACCTGT < 41bp 0.523987872694527 0.782677965114532 0.06567678 0.09170461 prediction 0.51738018484001 Functional Gain - GPR82 ENSG00000171657 CDS Human protein_coding chrX:41586422 chrX:41586424 nonsynonymous SNV 0.997 0 23 hm5C_associated_SNPs_106728 0 0 0 3 0 nucleus 0.500231641913491 0.500231699687414 0 1.15547845735975e-07 hm5C_site_59873 DeepMRMD:0;iRNA_m5C:1.15547845735975e-07 59874 chr1 107600578 107600578 1 + C G SARC 107600577 + 107600557 107600597 41 GCAAGTAGGGGGAATATCTCCCCCTTTTCCCTCATAGCCTC GCAAGTAGGGGGAATATCTCCGCCTTTTCCCTCATAGCCTC < 41bp 0.573217194869294 0.831905308675251 0.023917377 0.047438085 prediction 0.517376227611912 Functional Gain - PRMT6 ENSG00000198890 UTR3 Human protein_coding chr1:107600577 chr1:107600578 . . 0 22 hm5C_associated_SNPs_106729 0 0 1 1 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59874 DeepMRMD:0;iRNA_m5C:0 59875 chr10 13234478 13234478 1 + T C UCEC 13234476 + 13234456 13234496 41 ATGGGGAGCCCAAAACCAGCCATCAAGTCCATCTCGGCCTC ATGGGGAGCCCAAAACCAGCCACCAAGTCCATCTCGGCCTC < 41bp 0.552576624664741 0.811259203772158 0.08716372 0.11318478 prediction 0.517365158214835 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13234476 chr10:13234478 nonsynonymous SNV 0.645 1 23 hm5C_associated_SNPs_106730 0 0 1 0 2 Nucleus 0.500231643921094 0.500231643921092 0 0 hm5C_site_59875 DeepMRMD:0;iRNA_m5C:0 59876 chr11 3829822 3829822 1 + C G rs558862497 3829821 + 3829801 3829841 41 GACCAGCCCGCAGAGCCAGCCCCCGACCCCGGGCCACCTGG GACCAGCCCGCAGAGCCAGCCGCCGACCCCGGGCCACCTGG < 41bp 0.48524286215735 0.758675756001641 0.274096 0.8798712 prediction 0.517351512003283 Functional Gain - PGAP2 ENSG00000148985 UTR5 Human protein_coding chr11:3829821 chr11:3829822 . . 0 22 hm5C_associated_SNPs_106731 0 0 1 0 1 Ribosome 0.500231643920837 0.500232878105027 0.7597424 2.46836837947129e-06 hm5C_site_59876 DeepMRMD:0.7597424;iRNA_m5C:2.46836837947129e-06 59877 chr1 52798480 52798480 1 + C A SARC 52798476 + 52798456 52798496 41 ACAAGTCCAATGAGCATGTCCTGGCAGGAGGTGCCTGCTTC ACAAGTCCAATGAGCATGTCCTGGAAGGAGGTGCCTGCTTC < 41bp 0.343640104036627 0.758669538283404 0.055726618 0.06336784 prediction 0.517339076566807 Functional Gain - ZFYVE9 ENSG00000157077 CDS Human protein_coding chr1:52798476 chr1:52798480 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106732 0 0 1 0 1 Ribosome 0.500231643923032 0.500231644160168 0 4.74272621175942e-10 hm5C_site_59877 DeepMRMD:0;iRNA_m5C:4.74272621175942e-10 59878 chr9 2039706 2039706 1 + C T SKCM 2039705 + 2039685 2039725 41 TGGCCCGAGGCCAGCCCCTCCCCGAAACGCTGCAGCTTGCA TGGCCCGAGGCCAGCCCCTCCTCGAAACGCTGCAGCTTGCA < 41bp 0.498721141170727 0.758664314997243 0.25845474 0.9183987 prediction 0.517328629994485 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2039705 chr9:2039706 nonsynonymous SNV 0.835 4 22 hm5C_associated_SNPs_106733 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0.8367974 0 hm5C_site_59878 DeepMRMD:0.8367974;iRNA_m5C:0 59879 chr1 55166120 55166120 1 + C G rs147744184 55166119 + 55166099 55166139 41 CGAGGCCTGGTCATCCTGGCCCGCAGGTCTGAGAAGGTGAG CGAGGCCTGGTCATCCTGGCCGGCAGGTCTGAGAAGGTGAG < 41bp 0.452414808782211 0.758663112413317 0.073596835 0.2936607 prediction 0.517326224826634 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55166119 chr1:55166120 nonsynonymous SNV 0.980 0 22 hm5C_associated_SNPs_106734 0 0 0 0 0 exosome 0.500231654471347 0.500231643924955 0 0 hm5C_site_59879 DeepMRMD:0;iRNA_m5C:0 59880 chr9 118950363 118950363 1 + T C LUSC 118950361 + 118950341 118950381 41 CACCTGCGCCACCCTGCCTTCGTGAAGAAGCAGCACAACGG CACCTGCGCCACCCTGCCTTCGCGAAGAAGCAGCACAACGG < 41bp 0.524884253856781 0.783532372406458 0.44944763 0.65113664 prediction 0.517296237099353 Functional Gain - PAPPA ENSG00000182752 CDS Human protein_coding chr9:118950361 chr9:118950363 nonsynonymous SNV 0.882 0 23 hm5C_associated_SNPs_106735 0 0 0 0 0 Endoplasmic reticulum 0.50023164392054 0.500231643921092 0.30227328 1.10400577568726e-12 hm5C_site_59880 DeepMRMD:0.30227328;iRNA_m5C:1.10400577568726e-12 59881 chr3 197882506 197882506 1 + T A rs2690956 197882502 + 197882482 197882522 41 CTCCGTGGCAGGTTCTCCGCCGGCTCTGGCTGCGGGCGGCC CTCCGTGGCAGGTTCTCCGCCGGCACTGGCTGCGGGCGGCC < 41bp 0.46747515483106 0.758635989666564 0.23216614 0.33982518 prediction 0.517271979333128 Functional Gain - FAM157A ENSG00000236438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:197882502 chr3:197882506 . . 0 25 hm5C_associated_SNPs_106736 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59881 DeepMRMD:0;iRNA_m5C:0 59882 chrX 14927087 14927087 1 + C A LUSC 14927083 + 14927063 14927103 41 ACTATGTCAGTGTAGAATACCTGCCTCCCCACATGGGTGGA ACTATGTCAGTGTAGAATACCTGCATCCCCACATGGGTGGA < 41bp 0.333422017778496 0.75863453302043 0.11016804 0.09992847 prediction 0.51726906604086 Functional Gain - MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14927083 chrX:14927087 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106737 0 0 0 0 1 Cytosol 0.500231643921067 0.500231643921068 0 2.22044604925031e-15 hm5C_site_59882 DeepMRMD:0;iRNA_m5C:2.22044604925031e-15 59883 chr20 23016445 23016445 1 + C A UCEC 23016441 + 23016421 23016461 41 CCCTTCGTGGCCTCGTCGGCCGCCCTGCGCCACTGGCCCTT CCCTTCGTGGCCTCGTCGGCCGCCATGCGCCACTGGCCCTT < 41bp 0.646763854882047 0.905384313056083 0.1953265 0.60963804 prediction 0.517240916348071 Functional Gain - SSTR4 ENSG00000132671 CDS Human protein_coding chr20:23016441 chr20:23016445 nonsynonymous SNV 0.822 1 25 hm5C_associated_SNPs_106738 0 0 0 0 0 exosome 0.500231514998059 0.50094579375716 0.21927608 0.00142855751820203 hm5C_site_59883 DeepMRMD:0.21927608;iRNA_m5C:0.00142855751820203 59884 chr2 131414640 131414640 1 + C A rs537219664 131414639 + 131414619 131414659 41 GGAGCACCCCATCCTGCTGACCGAGGCCCCCCTGAACCCCA GGAGCACCCCATCCTGCTGACAGAGGCCCCCCTGAACCCCA < 41bp 0.501378931404057 0.759995098233644 0.5553175 0.84601736 prediction 0.517232333659175 Functional Gain - POTEJ ENSG00000222038 CDS Human protein_coding chr2:131414639 chr2:131414640 synonymous SNV . 0 22 hm5C_associated_SNPs_106739 0 0 0 0 0 exosome 0.500232327375657 0.500231643921587 0.58139972 0 hm5C_site_59884 DeepMRMD:0.58139972;iRNA_m5C:0 59885 chr14 86089581 86089581 1 + C A COAD 86089577 + 86089557 86089597 41 CACAAAAAGGGGCGCTACACCTCCCAGAAGTGGAAATACAA CACAAAAAGGGGCGCTACACCTCCAAGAAGTGGAAATACAA < 41bp 0.329630350464024 0.758616083489936 0.16995886 0.9547114 prediction 0.517232166979872 Functional Gain - FLRT2 ENSG00000185070 CDS Human protein_coding chr14:86089577 chr14:86089581 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106740 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921107 0.9094228 2.90878432451791e-14 hm5C_site_59885 DeepMRMD:0.9094228;iRNA_m5C:2.90878432451791e-14 59886 chr20 13251388 13251388 1 + C G rs75146235 13251387 + 13251367 13251407 41 AATGGGCAGAATCCAAATATCCAGGTAATTCTTGGCACCTG AATGGGCAGAATCCAAATATCGAGGTAATTCTTGGCACCTG < 41bp 0.58297310560805 0.841576744925721 0.88096976 0.91883147 prediction 0.517207278635341 Functional Gain - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13251387 chr20:13251388 nonsynonymous SNV 0.992 3 22 hm5C_associated_SNPs_106741 0 0 1 0 1 exosome 0.500231643952289 0.50023164393139 0.0757234199999999 0 hm5C_site_59886 DeepMRMD:0.0757234199999999;iRNA_m5C:0 59887 chr14 89039278 89039278 1 + C G rs548038372 89039277 + 89039257 89039297 41 AAACAGGACGTTTGTGTGAACCAGAGGTGCTTAACAGCTTA AAACAGGACGTTTGTGTGAACGAGAGGTGCTTAACAGCTTA < 41bp 0.572901741612094 0.831497762503491 0.7036922 0.7324044 prediction 0.517192041782794 Functional Gain - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89039277 chr14:89039278 nonsynonymous SNV 0.985 1 22 hm5C_associated_SNPs_106742 0 0 1 0 1 Nucleus 0.500231643927893 0.500231643966841 0.0574243999999999 7.78954678537502e-11 hm5C_site_59887 DeepMRMD:0.0574243999999999;iRNA_m5C:7.78954678537502e-11 59888 chrX 34961267 34961267 1 + C A UCEC 34961263 + 34961243 34961283 41 AAGAAAGCGGCCCTATTTTCCGAGCTCTCGCCAGTACAGCC AAGAAAGCGGCCCTATTTTCCGAGATCTCGCCAGTACAGCC < 41bp 0.64326128199234 0.901855336818965 0.84356844 0.8871078 prediction 0.51718810965325 Functional Gain - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961263 chrX:34961267 nonsynonymous SNV 0.004 3 25 hm5C_associated_SNPs_106743 0 0 0 0 0 unknown 0.50023153233818 0.500231630060011 0.0870787200000001 1.95443662143191e-07 hm5C_site_59888 DeepMRMD:0.0870787200000001;iRNA_m5C:1.95443662143191e-07 59889 chrX 48682427 48682427 1 + T A LUAD 48682423 + 48682403 48682443 41 AGGCCTAGACGTGACCCAACCTTGTGGGGACTGTGGAACAA AGGCCTAGACGTGACCCAACCTTGAGGGGACTGTGGAACAA < 41bp 0.439246097248848 0.758586837486831 0.0651876 0.105122715 prediction 0.517173674973662 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48682423 chrX:48682427 stopgain 0.932 1 25 hm5C_associated_SNPs_106744 0 0 1 0 2 Cytosol 0.500231598986691 0.500231444892251 0 0 hm5C_site_59889 DeepMRMD:0;iRNA_m5C:0 59890 chr15 44695169 44695169 1 + T C PAAD 44695167 + 44695147 44695187 41 TATAATGGGGATGATGGTAACGTAGGTGAGTATGAGGCAGA TATAATGGGGATGATGGTAACGCAGGTGAGTATGAGGCAGA < 41bp 0.496049996017479 0.758584301588646 0.82146007 0.6573588 prediction 0.517168603177292 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44695167 chr15:44695169 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106745 0 0 1 0 2 Ribosome 0.500231638085048 0.500231642036202 0 7.90230725300489e-09 hm5C_site_59890 DeepMRMD:0;iRNA_m5C:7.90230725300489e-09 59891 chr1 152857052 152857052 1 + C G OV 152857048 + 152857028 152857068 41 CAGCCAAAAGGCAGTCAATGCTGCCCACCAAAACACAATCA CAGCCAAAAGGCAGTCAATGCTGCGCACCAAAACACAATCA < 41bp 0.563763787952984 0.822327000793767 0.22113892 0.2624346 prediction 0.517126425681566 Functional Gain - SMCP ENSG00000163206 CDS Human protein_coding chr1:152857048 chr1:152857052 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_106746 0 0 0 0 0 unknown 0.500231343411154 0.500232031209736 0 1.37559716528735e-06 hm5C_site_59891 DeepMRMD:0;iRNA_m5C:1.37559716528735e-06 59892 chr1 6280061 6280061 1 + T A rs569839496 6280057 + 6280037 6280077 41 AAGTAGAGAGGGGGTTTCTCCATGTTGGTCAGGCTGGCCTC AAGTAGAGAGGGGGTTTCTCCATGATGGTCAGGCTGGCCTC < 41bp 0.526538411919112 0.785088216706325 0.7410474 0.4923673 prediction 0.517099609574426 Functional Gain - RNF207 ENSG00000158286 UTR3 Human protein_coding chr1:6280057 chr1:6280061 . . 0 25 hm5C_associated_SNPs_106747 0 0 0 0 0 Nucleus 0.500231643934544 0.500231643929585 0 0 hm5C_site_59892 DeepMRMD:0;iRNA_m5C:0 59893 chr6 4892568 4892568 1 + C G LUSC 4892564 + 4892544 4892584 41 CCACTAGTGCCTCAGGTGCCCGGCCCTGTGACTGCAGCCAT CCACTAGTGCCTCAGGTGCCCGGCGCTGTGACTGCAGCCAT < 41bp 0.537570806344997 0.796119131862952 0.23470354 0.7756275 prediction 0.51709665103591 Functional Gain - CDYL ENSG00000153046 CDS Human protein_coding chr6:4892564 chr6:4892568 nonsynonymous SNV 0.066 1 25 hm5C_associated_SNPs_106748 0 0 1 0 1 Cytoplasm 0.500231643921093 0.500231643921092 0.551255 0 hm5C_site_59893 DeepMRMD:0.551255;iRNA_m5C:0 59894 chr2 98340508 98340508 1 + C A LIHC 98340504 + 98340484 98340524 41 GGGAGGCCCAGGGGCGATGCCAGACCCCGCGGCGCACCTGC GGGAGGCCCAGGGGCGATGCCAGAACCCGCGGCGCACCTGC < 41bp 0.650229657497982 0.908777473531891 0.8688707 0.88608634 prediction 0.517095632067819 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98340504 chr2:98340508 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_106749 0 0 0 0 1 exosome 0.50023164611519 0.50023185357862 0.03443128 4.14926860647924e-07 hm5C_site_59894 DeepMRMD:0.03443128;iRNA_m5C:4.14926860647924e-07 59895 chr9 35660929 35660929 1 + C G HNSC 35660925 + 35660905 35660945 41 AACTGGAACATTCCTGATCTCTCCCCACACAGAGGCCAGCA AACTGGAACATTCCTGATCTCTCCGCACACAGAGGCCAGCA < 41bp 0.484585063727341 0.758545814185793 0.077665 0.09695521 prediction 0.517091628371585 Functional Gain - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660925 chr9:35660929 synonymous SNV . 0 25 hm5C_associated_SNPs_106750 0 0 0 3 0 Endoplasmic reticulum 0.50023164365793 0.500231643799421 0 2.82981194033027e-10 hm5C_site_59895 DeepMRMD:0;iRNA_m5C:2.82981194033027e-10 59896 chr3 173322631 173322631 1 + T G LUSC 173322629 + 173322609 173322649 41 TGGGGCCTGTTATTCAATTTCTTGGGGTTCCATATGCAGCC TGGGGCCTGTTATTCAATTTCTGGGGGTTCCATATGCAGCC < 41bp 0.513105063246687 0.771643726227071 0.15217873 0.58728963 prediction 0.517077325960769 Functional Gain - NLGN1 ENSG00000169760 CDS Human protein_coding chr3:173322629 chr3:173322631 synonymous SNV . 0 23 hm5C_associated_SNPs_106751 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.17457926 0 hm5C_site_59896 DeepMRMD:0.17457926;iRNA_m5C:0 59897 chr17 57287460 57287460 1 + C G rs375060156 57287459 + 57287439 57287479 41 CCTTCTAATGGGAGCATCAGCCTGGATGGGCTCTGAAAGTC CCTTCTAATGGGAGCATCAGCGTGGATGGGCTCTGAAAGTC < 41bp 0.583998773788257 0.842529732458697 0.61791384 0.8381176 prediction 0.517061917340879 Functional Gain - SMG8 ENSG00000167447 CDS Human protein_coding chr17:57287459 chr17:57287460 synonymous SNV . 0 22 hm5C_associated_SNPs_106752 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.44040752 0 hm5C_site_59897 DeepMRMD:0.44040752;iRNA_m5C:0 59898 chr8 146228262 146228262 1 + A C rs7823346 146228264 - 146228244 146228284 41 GGCATTTCCGGCCCAGGGGGCTTGGCTCCCCGCGGCACGGG GGCATTTCCGGCCCAGGGGGCTGGGCTCCCCGCGGCACGGG < 41bp 0.435718739965496 0.758527875449382 0.676002 0.88158333 prediction 0.517055750898765 Functional Gain - ZNF252P;ZNF252P-AS1 ENSG00000196922;ENSG00000255559 ncRNA_exonic Human other chr8:146228264 chr8:146228262 . . 0 23 hm5C_associated_SNPs_106753 0 0 1 0 1 unknown 0.500231643921092 0.500231643921092 0.41116266 0 hm5C_site_59898 DeepMRMD:0.41116266;iRNA_m5C:0 59899 chr2 43871886 43871886 1 + T C SKCM 43871884 + 43871864 43871904 41 GTAGCTCTGGAGTCCCAACTCATGAAATTTAGAGTTCAAGC GTAGCTCTGGAGTCCCAACTCACGAAATTTAGAGTTCAAGC < 41bp 0.533752505958604 0.792279526660705 0.06777853 0.13648972 prediction 0.5170540414042 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43871884 chr2:43871886 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106754 0 0 0 0 2 Ribosome 0.500231643929698 0.50023164392719 0 0 hm5C_site_59899 DeepMRMD:0;iRNA_m5C:0 59900 chr19 19221578 19221578 1 + C A STAD 19221574 + 19221554 19221594 41 CGGGAGGAGGGCGCCGTGCGCGGCCTCTACAAAGGCTTGAG CGGGAGGAGGGCGCCGTGCGCGGCATCTACAAAGGCTTGAG < 41bp 0.651680259229586 0.910193909918109 0.24894428 0.8028716 prediction 0.517027301377047 Functional Gain - SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19221574 chr19:19221578 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_106755 0 0 0 0 0 Endoplasmic reticulum 0.500231643926781 0.500231643920892 0.6057432 0 hm5C_site_59900 DeepMRMD:0.6057432;iRNA_m5C:0 59901 chr10 50531606 50531606 1 + C A rs55780106 50531602 + 50531582 50531622 41 GCAGTCAGGAAGAGAACAGACTTGCAGCAGGGGCTCTGTCC GCAGTCAGGAAGAGAACAGACTTGAAGCAGGGGCTCTGTCC < 41bp 0.353383815487971 0.758506186903165 0.09497267 0.0898962 prediction 0.517012373806331 Functional Gain - C10orf71 ENSG00000177354 CDS Human protein_coding chr10:50531602 chr10:50531606 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_106756 0 0 0 0 0 chromatin 0.500231643921206 0.500231643921586 0 7.60502771868232e-13 hm5C_site_59901 DeepMRMD:0;iRNA_m5C:7.60502771868232e-13 59902 chr6 109578931 109578931 1 + C A SARC 109578927 + 109578907 109578947 41 AGCTGGCCCTGGACCTGTGGCTCACCCCAGCCACGCCTGAG AGCTGGCCCTGGACCTGTGGCTCAACCCAGCCACGCCTGAG < 41bp 0.325139064877726 0.758486350628799 0.051464766 0.47994924 prediction 0.516972701257597 Functional Gain - C6orf183 ENSG00000243587;ENSG00000233908 intergenic Human other chr6:109578927 chr6:109578931 . . 0 25 hm5C_associated_SNPs_106757 0 0 1 0 1 unknown 0.500231643829759 0.500231643921091 0 1.82664550152367e-10 hm5C_site_59902 DeepMRMD:0;iRNA_m5C:1.82664550152367e-10 59903 chr9 34241773 34241773 1 + C G KIRC 34241772 + 34241752 34241792 41 TGAAAAGATGTCACTGTCTTCCAAAGTGTCCCTCCCCCCTA TGAAAAGATGTCACTGTCTTCGAAAGTGTCCCTCCCCCCTA < 41bp 0.581742440571707 0.840226926673913 0.21081853 0.4530918 prediction 0.516968972204412 Functional Gain - UBAP1 ENSG00000165006 CDS Human protein_coding chr9:34241772 chr9:34241773 synonymous SNV . 0 22 hm5C_associated_SNPs_106758 0 0 1 0 0 Ribosome 0.500231643921091 0.500231644218533 0 5.9488325376833e-10 hm5C_site_59903 DeepMRMD:0;iRNA_m5C:5.9488325376833e-10 59904 chr2 128408720 128408720 1 + C G BLCA 128408716 + 128408696 128408736 41 TTTCCTGGCCATTGTGCACCCGGTCAAGTCCCTCAAGCTCC TTTCCTGGCCATTGTGCACCCGGTGAAGTCCCTCAAGCTCC < 41bp 0.469555187411861 0.758484083410767 0.19221264 0.33926064 prediction 0.516968166821534 Functional Gain - GPR17 ENSG00000144230 CDS Human protein_coding chr2:128408716 chr2:128408720 synonymous SNV . 0 25 hm5C_associated_SNPs_106759 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_59904 DeepMRMD:0;iRNA_m5C:0 59905 chr6 28253470 28253470 1 + C T SKCM 28253469 + 28253449 28253489 41 CACAGCGTCCTCAAGGGAACCCCCAAGAAGTGAGTGGTGAG CACAGCGTCCTCAAGGGAACCTCCAAGAAGTGAGTGGTGAG < 41bp 0.505440791124178 0.763919788347429 0.11152035 0.96371996 prediction 0.516957994446503 Functional Gain - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28253469 chr6:28253470 nonsynonymous SNV 0.016 1 22 hm5C_associated_SNPs_106760 0 0 0 0 1 nucleoplasm 0.500231643921093 0.500231643938956 0.92743992 3.57271989770425e-11 hm5C_site_59905 DeepMRMD:0.92743992;iRNA_m5C:3.57271989770425e-11 59906 chr14 24600969 24600969 1 + T G LAML 24600967 + 24600947 24600987 41 TGGCTGGCAGCAGTGGTCATCTTTGGGCCGCTTCTGCAGTT TGGCTGGCAGCAGTGGTCATCTGTGGGCCGCTTCTGCAGTT < 41bp 0.418372091473415 0.758473037983149 0.15883711 0.27849013 prediction 0.516946075966298 Functional Gain - FITM1 ENSG00000139914;ENSG00000259371 CDS Human other chr14:24600967 chr14:24600969 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_106761 0 0 0 0 1 insoluble cytoplasm 0.500231860259541 0.500231719315077 0 0 hm5C_site_59906 DeepMRMD:0;iRNA_m5C:0 59907 chr16 691854 691854 1 + C G rs563804891 691853 + 691833 691873 41 GTGTCCGGGGTCAGCCCGAGCCCGTGCGGGCCCTTTAAGGG GTGTCCGGGGTCAGCCCGAGCGCGTGCGGGCCCTTTAAGGG < 41bp 0.546736208295273 0.805205482672496 0.26393044 0.4691277 prediction 0.516938548754447 Functional Gain - MCRIP2 ENSG00000172366 UTR5 Human protein_coding chr16:691853 chr16:691854 . . 0 22 hm5C_associated_SNPs_106762 0 0 1 0 0 Cytosol 0.500231644187561 0.500231644394524 0 4.13926226627837e-10 hm5C_site_59907 DeepMRMD:0;iRNA_m5C:4.13926226627837e-10 59908 chr7 36339724 36339724 1 + C G rs13224824 36339723 + 36339703 36339743 41 CACTCACTCCAGTTTTTAGCCCGGAGCCTCCTGTGGTTGAC CACTCACTCCAGTTTTTAGCCGGGAGCCTCCTGTGGTTGAC < 41bp 0.585706668175221 0.844174099779537 0.79369146 0.93557596 prediction 0.516934863208632 Functional Gain - EEPD1 ENSG00000122547 UTR3 Human protein_coding chr7:36339723 chr7:36339724 . . 0 22 hm5C_associated_SNPs_106763 0 0 0 0 0 cytosol 0.500231640631214 0.500231643936743 0.283769 6.61105858945632e-09 hm5C_site_59908 DeepMRMD:0.283769;iRNA_m5C:6.61105858945632e-09 59909 chr19 52447841 52447841 1 + T G rs140416846 52447838 + 52447818 52447858 41 GGGGAGAAACCTCATGGATGCAGTATATGTGGGAAAGCCTT GGGGAGAAACCTCATGGATGCAGGATATGTGGGAAAGCCTT < 41bp 0.651922673610099 0.910386882683272 0.37022823 0.90219903 prediction 0.516928418146344 Functional Gain - ZNF613 ENSG00000176024 CDS Human protein_coding chr19:52447838 chr19:52447841 nonsynonymous SNV 0.995 1 24 hm5C_associated_SNPs_106764 0 0 1 0 0 nucleus 0.500231643920156 0.500231643921092 0.80439806 1.87316828714756e-12 hm5C_site_59909 DeepMRMD:0.80439806;iRNA_m5C:1.87316828714756e-12 59910 chr21 45502741 45502741 1 + T C COAD 45502739 + 45502719 45502759 41 CATTTTGATCCCTCCAATGCCGTGGTCCACGTGGGCGGCGT CATTTTGATCCCTCCAATGCCGCGGTCCACGTGGGCGGCGT < 41bp 0.506013175064855 0.764459172555646 0.5005946 0.71293443 prediction 0.516891994981582 Functional Gain - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45502739 chr21:45502741 nonsynonymous SNV 0.987 2 23 hm5C_associated_SNPs_106765 0 0 1 0 0 Cytosol 0.500231692162967 0.500231640178755 0.42467966 0 hm5C_site_59910 DeepMRMD:0.42467966;iRNA_m5C:0 59911 chr19 58868800 58868800 1 + C G rs202207008 58868799 + 58868779 58868819 41 CCAGCTCCCTGCCGGGGCCTCCCTGTTCGTCCGCCGCCCCC CCAGCTCCCTGCCGGGGCCTCGCTGTTCGTCCGCCGCCCCC < 41bp 0.574139595121809 0.832568262022106 0.2835218 0.36736658 prediction 0.516857333800594 Functional Gain - ZNF497 ENSG00000174586 CDS Human protein_coding chr19:58868799 chr19:58868800 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_106766 0 0 0 0 0 Nucleus 0.500231643921096 0.50023164583077 0 3.81934661675132e-09 hm5C_site_59911 DeepMRMD:0;iRNA_m5C:3.81934661675132e-09 59912 chr2 233321772 233321772 1 + C A KIRC 233321768 + 233321748 233321788 41 AGGTCATCTCCGTGATGAACCGGGCCAAGCAAGCAGGTGAG AGGTCATCTCCGTGATGAACCGGGACAAGCAAGCAGGTGAG < 41bp 0.654269412007153 0.912692049972246 0.87062275 0.8543392 prediction 0.516845275930184 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233321768 chr2:233321772 nonsynonymous SNV 0.968 5 25 hm5C_associated_SNPs_106767 0 0 1 0 1 Cytosol 0.500232125964366 0.500231640806224 0 0 hm5C_site_59912 DeepMRMD:0;iRNA_m5C:0 59913 chr12 113445545 113445545 1 + C T SKCM 113445544 + 113445524 113445564 41 GAAGCCAAAGGGGTCTTTGCCCCCAAAGTATGCCTTGGAGC GAAGCCAAAGGGGTCTTTGCCTCCAAAGTATGCCTTGGAGC < 41bp 0.536559088877176 0.794981645104264 0.026862174 0.9511044 prediction 0.516845112454176 Functional Gain - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113445544 chr12:113445545 synonymous SNV . 0 22 hm5C_associated_SNPs_106768 0 0 0 0 0 exosome 0.500231643921092 0.500231643921102 0.9022088 1.82076576038526e-14 hm5C_site_59913 DeepMRMD:0.9022088;iRNA_m5C:1.82076576038526e-14 59914 chr7 75508332 75508332 1 + C G rs550617756 75508328 + 75508308 75508348 41 TCTGCTGTTGCCAAGGGAAACTGCCGCGAGGAGGCGGAAGG TCTGCTGTTGCCAAGGGAAACTGCGGCGAGGAGGCGGAAGG < 41bp 0.490529808587157 0.758421425738598 0.29675668 0.65851676 prediction 0.516842851477196 Functional Gain - RHBDD2 ENSG00000005486 UTR5 Human protein_coding chr7:75508328 chr7:75508332 . . 0 25 hm5C_associated_SNPs_106769 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643920839 0.31703352 0 hm5C_site_59914 DeepMRMD:0.31703352;iRNA_m5C:0 59915 chr3 183860073 183860073 1 + T C GBM 183860071 + 183860051 183860091 41 GCCTGAGGGCTCGGTGATCTCTTTGCACCCTCCAGATGCAG GCCTGAGGGCTCGGTGATCTCTCTGCACCCTCCAGATGCAG < 41bp 0.482045920919622 0.758404246709521 0.061637282 0.11270869 prediction 0.516808493419042 Functional Gain - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860071 chr3:183860073 synonymous SNV . 0 23 hm5C_associated_SNPs_106770 0 0 0 0 2 Ribosome 0.500231643921077 0.500231643921115 0 7.52731210695856e-14 hm5C_site_59915 DeepMRMD:0;iRNA_m5C:7.52731210695856e-14 59916 chr2 98353986 98353986 1 + T C UCEC 98353984 + 98353964 98354004 41 GAGCTGCTGCACCAGGTGTCCATGGGGATGAAGTACCTGGA GAGCTGCTGCACCAGGTGTCCACGGGGATGAAGTACCTGGA < 41bp 0.523261026339171 0.781662873783966 0.6788578 0.7749543 prediction 0.516803694889589 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98353984 chr2:98353986 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106771 0 0 0 0 1 exosome 0.500231643898569 0.500231643933004 0.192193 6.88702428419674e-11 hm5C_site_59916 DeepMRMD:0.192193;iRNA_m5C:6.88702428419674e-11 59917 chr6 27791912 27791912 1 + C G THCA 27791911 + 27791891 27791931 41 CTCTTGCTCGTCATGTCTGGCCGCGGCAAAGGCGGGAAGGG CTCTTGCTCGTCATGTCTGGCGGCGGCAAAGGCGGGAAGGG < 41bp 0.56078106374464 0.819182265188445 0.40352535 0.83470416 prediction 0.51680240288761 Functional Gain - HIST1H4J ENSG00000197238 CDS Human protein_coding chr6:27791911 chr6:27791912 nonsynonymous SNV 0.345 1 22 hm5C_associated_SNPs_106772 0 0 0 0 0 Ribosome 0.500231643921093 0.500231643921092 0.66940832 0 hm5C_site_59917 DeepMRMD:0.66940832;iRNA_m5C:0 59918 chr2 69046350 69046350 1 + C T LGG 69046349 + 69046329 69046369 41 ATACCCCTGTCACCCCCTGCCCAGAAAAATGACCCCAAGAA ATACCCCTGTCACCCCCTGCCTAGAAAAATGACCCCAAGAA < 41bp 0.50799568933583 0.76639210444554 0.0280824 0.055374086 prediction 0.516792830219421 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046349 chr2:69046350 stopgain 0.816 0 22 hm5C_associated_SNPs_106773 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0 8.88178419700125e-16 hm5C_site_59918 DeepMRMD:0;iRNA_m5C:8.88178419700125e-16 59919 chr4 174292541 174292541 1 + C A LUSC 174292537 + 174292517 174292557 41 GGCCCCGGGCAACTGTGCTGCCTGCGGGAGGATGGTGAGCG GGCCCCGGGCAACTGTGCTGCCTGAGGGAGGATGGTGAGCG < 41bp 0.410284643361002 0.758392178078884 0.25305602 0.37787238 prediction 0.516784356157767 Functional Gain - SAP30 ENSG00000164105 CDS Human protein_coding chr4:174292537 chr4:174292541 synonymous SNV . 0 25 hm5C_associated_SNPs_106774 0 0 1 0 0 Cytosol 0.500231643921093 0.500231643921297 0 4.09228206876833e-13 hm5C_site_59919 DeepMRMD:0;iRNA_m5C:4.09228206876833e-13 59920 chr3 50683670 50683670 1 + T C STAD 50683668 + 50683648 50683688 41 GCCAGTACGGCTTCCCCAATCCTGAGTGGTCAGAAGTCTCT GCCAGTACGGCTTCCCCAATCCCGAGTGGTCAGAAGTCTCT < 41bp 0.540835062944055 0.799226527084861 0.08423573 0.08184314 prediction 0.516782928281613 Functional Gain - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683668 chr3:50683670 synonymous SNV . 0 23 hm5C_associated_SNPs_106775 0 0 1 0 2 Ribosome 0.500385467295114 0.500231643921092 0 0 hm5C_site_59920 DeepMRMD:0;iRNA_m5C:0 59921 chr4 651212 651212 1 + C T CESC 651211 + 651191 651231 41 AAGATGAACAAGCTGGAGAACCGCAAGGACATCGCACAGGA AAGATGAACAAGCTGGAGAACTGCAAGGACATCGCACAGGA < 41bp 0.514702284042357 0.773087467122609 0.25190234 0.46290144 prediction 0.516770366160504 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:651211 chr4:651212 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_106776 0 0 0 0 2 Nucleus 0.500231642969881 0.500231643604823 0 1.2698839757519e-09 hm5C_site_59921 DeepMRMD:0;iRNA_m5C:1.2698839757519e-09 59922 chr16 2284603 2284603 1 + T C UCEC 2284601 + 2284581 2284621 41 CAGAACGCACAGCAGGTGCACTTCAGGACACACCTGGAGGA CAGAACGCACAGCAGGTGCACTCCAGGACACACCTGGAGGA < 41bp 0.477228843393006 0.758383850787852 0.20414105 0.8801174 prediction 0.516767701575704 Functional Gain - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284601 chr16:2284603 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_106777 0 0 1 0 1 chromatin 0.500231643921144 0.500231643864457 0.7602348 0 hm5C_site_59922 DeepMRMD:0.7602348;iRNA_m5C:0 59923 chr10 124216494 124216494 1 + T G rs150019974 124216492 + 124216472 124216512 41 AAAAGCCAACTGGAGCTTCTCATCAGCATCAATGTGAAGCC AAAAGCCAACTGGAGCTTCTCAGCAGCATCAATGTGAAGCC < 41bp 0.590419163091333 0.848802210873917 0.10493189 0.8554505 prediction 0.516766095565168 Functional Gain - ARMS2 ENSG00000254636 UTR3 Human protein_coding chr10:124216492 chr10:124216494 . . 0 23 hm5C_associated_SNPs_106778 0 0 0 2 1 exosome 0.500225065473415 0.500231866915842 0.710901 1.36028848534142e-05 hm5C_site_59923 DeepMRMD:0.710901;iRNA_m5C:1.36028848534142e-05 59924 chr17 70120362 70120362 1 + C G UCEC 70120358 + 70120338 70120378 41 ACTCCAGCTCCTACTACAGCCACGCGGCAGGCCAGGGCACC ACTCCAGCTCCTACTACAGCCACGGGGCAGGCCAGGGCACC < 41bp 0.522232399804109 0.780608798931559 0.07431704 0.24757022 prediction 0.5167527982549 Functional Gain - SOX9 ENSG00000125398 CDS Human protein_coding chr17:70120358 chr17:70120362 nonsynonymous SNV 0.987 2 25 hm5C_associated_SNPs_106779 0 0 1 0 0 Cytosol 0.500231643921092 0.50023164392317 0 4.15467660275226e-12 hm5C_site_59924 DeepMRMD:0;iRNA_m5C:4.15467660275226e-12 59925 chr17 40914831 40914831 1 + T A STAD 40914827 + 40914807 40914847 41 CCTCATCCCCTTCCTCATCACTCTTGTAGTATGGAGGAGTA CCTCATCCCCTTCCTCATCACTCTAGTAGTATGGAGGAGTA < 41bp 0.426448129786635 0.758373441408111 0.040022194 0.7885536 prediction 0.516746882816223 Functional Gain - RAMP2 ENSG00000131477 CDS Human protein_coding chr17:40914827 chr17:40914831 synonymous SNV . 0 25 hm5C_associated_SNPs_106780 0 0 1 0 0 exosome 0.500231643921108 0.500231643921105 0.5771072 0 hm5C_site_59925 DeepMRMD:0.5771072;iRNA_m5C:0 59926 chr19 54483190 54483190 1 + T G BLCA 54483188 + 54483168 54483208 41 CTGCTGCTCGGGGGTGTGTGCGTGGCGGCCTCCCGCGTCTA CTGCTGCTCGGGGGTGTGTGCGGGGCGGCCTCCCGCGTCTA < 41bp 0.642310719297998 0.900682848907694 0.9071819 0.9544258 prediction 0.516744259219391 Functional Gain - CACNG8 ENSG00000142408 CDS Human protein_coding chr19:54483188 chr19:54483190 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106781 0 0 1 0 2 exosome 0.50023200358095 0.500231643940445 0.0944878 0 hm5C_site_59926 DeepMRMD:0.0944878;iRNA_m5C:0 59927 chr12 69234017 69234017 1 + C A rs528106904 69234013 + 69233993 69234033 41 TGGCTCACTGCAAGCTCTGCCTCCCGGGTTCGCACCATTCT TGGCTCACTGCAAGCTCTGCCTCCAGGGTTCGCACCATTCT < 41bp 0.416687045460192 0.758368434986939 0.037867367 0.89863 prediction 0.516736869973879 Functional Gain - MDM2 ENSG00000135679 UTR3 Human protein_coding chr12:69234013 chr12:69234017 . . 0 25 hm5C_associated_SNPs_106782 0 0 1 0 0 Cytosol 0.500226167974575 0.500228911885534 0.79726 5.48782191822639e-06 hm5C_site_59927 DeepMRMD:0.79726;iRNA_m5C:5.48782191822639e-06 59928 chr20 34575396 34575396 1 + T A LUSC 34575392 + 34575372 34575412 41 ATGGCGAAGATAGAGAGGTTCTCGTATGGGCAGCTGATCTC ATGGCGAAGATAGAGAGGTTCTCGAATGGGCAGCTGATCTC < 41bp 0.599866712982091 0.858234318850044 0.34142244 0.8343431 prediction 0.516735211735906 Functional Gain - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34575392 chr20:34575396 nonsynonymous SNV 0.073 0 25 hm5C_associated_SNPs_106783 0 0 0 0 2 exosome 0.500231643814884 0.500231643842411 0.6686862 5.50541834343221e-11 hm5C_site_59928 DeepMRMD:0.6686862;iRNA_m5C:5.50541834343221e-11 59929 chr9 33797979 33797979 1 + T C LGG 33797977 + 33797957 33797997 41 ATCAAACTCTCCTCACCTGCCGTCATCAATGCCCGCGTGTC ATCAAACTCTCCTCACCTGCCGCCATCAATGCCCGCGTGTC < 41bp 0.480135675002672 0.758366422101595 0.015902042 0.037048995 prediction 0.51673284420319 Functional Gain - PRSS3 ENSG00000010438 CDS Human protein_coding chr9:33797977 chr9:33797979 nonsynonymous SNV 0.048 1 23 hm5C_associated_SNPs_106784 0 0 0 0 0 Ribosome 0.500231643920859 0.500231643672981 0 0 hm5C_site_59929 DeepMRMD:0;iRNA_m5C:0 59930 chr20 56285655 56285655 1 + C G rs181867175 56285654 + 56285634 56285674 41 GGGAACTCGCGTAGACACGCCCGGAAGCCCTTGTCATGTAA GGGAACTCGCGTAGACACGCCGGGAAGCCCTTGTCATGTAA < 41bp 0.462552824780715 0.758362518501977 0.3396845 0.7388388 prediction 0.516725037003953 Functional Gain - NKILA ENSG00000124225 intronic Human protein_coding chr20:56285654 chr20:56285655 . . 0 22 hm5C_associated_SNPs_106785 0 0 0 0 0 unknown 0.500231565131062 0.500231793132014 0.4776776 4.56001905124737e-07 hm5C_site_59930 DeepMRMD:0.4776776;iRNA_m5C:4.56001905124737e-07 59931 chr17 4701662 4701662 1 + T A STAD 4701658 + 4701638 4701678 41 CAGAGTCAGGGGTAGAGCGGCAAGTACTTTTGGGAGACCAG CAGAGTCAGGGGTAGAGCGGCAAGAACTTTTGGGAGACCAG < 41bp 0.574928837762387 0.833282408118262 0.35208014 0.36597556 prediction 0.51670714071175 Functional Gain - PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701658 chr17:4701662 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_106786 0 0 1 0 1 Ribosome 0.500231643920843 0.500231643921087 0 4.88054041625219e-13 hm5C_site_59931 DeepMRMD:0;iRNA_m5C:4.88054041625219e-13 59932 chr14 24113702 24113702 1 + C G rs148351218 24113701 + 24113681 24113721 41 GAGCTGGCCCCCAAGGACATCCGGGTAAACTGCGTGGTTCC GAGCTGGCCCCCAAGGACATCGGGGTAAACTGCGTGGTTCC < 41bp 0.588390640376942 0.846740903526706 0.87844527 0.911582 prediction 0.516700526299528 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113701 chr14:24113702 nonsynonymous SNV 0.500 4 22 hm5C_associated_SNPs_106787 0 0 1 0 3 Ribosome 0.500231643921097 0.500231643921093 0.0662734600000001 0 hm5C_site_59932 DeepMRMD:0.0662734600000001;iRNA_m5C:0 59933 chr6 17507504 17507504 1 + C G rs146710056 17507500 + 17507480 17507520 41 TAACATGTTTAATCATCTTTCGGCCGTCAGCGAAAGCATCC TAACATGTTTAATCATCTTTCGGCGGTCAGCGAAAGCATCC < 41bp 0.470485156245676 0.758342867734826 0.68256825 0.9177648 prediction 0.516685735469653 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17507500 chr6:17507504 synonymous SNV . 0 25 hm5C_associated_SNPs_106788 0 0 1 0 1 exosome 0.500231643921092 0.500231643921092 0.4703931 0 hm5C_site_59933 DeepMRMD:0.4703931;iRNA_m5C:0 59934 chr4 22820531 22820531 1 + T G COAD 22820529 + 22820509 22820549 41 AGATCATCCGAAACAATGGCCTTGAAGCACATCTGTAGGCA AGATCATCCGAAACAATGGCCTGGAAGCACATCTGTAGGCA < 41bp 0.604533116698237 0.862874088982817 0.0873366 0.20518568 prediction 0.51668194456916 Functional Gain - GBA3 ENSG00000249948 CDS Human polymorphic_pseudogene chr4:22820529 chr4:22820531 unknown . 0 23 hm5C_associated_SNPs_106789 0 0 0 1 0 unknown 0.500231643921082 0.500231643921081 0 0 hm5C_site_59934 DeepMRMD:0;iRNA_m5C:0 59935 chr4 57861558 57861558 1 + C A KIRP 57861554 + 57861534 57861574 41 ACCAGTACTATATGGGTTAGCATGCTGGCAAGAGGAGGACA ACCAGTACTATATGGGTTAGCATGATGGCAAGAGGAGGACA < 41bp 0.355227242531949 0.758333041952215 0.36542803 0.34383482 prediction 0.51666608390443 Functional Gain - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57861554 chr4:57861558 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_106790 0 0 1 0 1 Nucleus 0.500231642131937 0.500231640468254 0 0 hm5C_site_59935 DeepMRMD:0;iRNA_m5C:0 59936 chr9 131767451 131767451 1 + C G UCEC 131767447 + 131767427 131767467 41 TCAACCTGGGTTACTTGTGCCAGGCATGTACCTCTCTCCTG TCAACCTGGGTTACTTGTGCCAGGGATGTACCTCTCTCCTG < 41bp 0.473557777482002 0.758331833079783 0.8647391 0.9198091 prediction 0.516663666159565 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131767447 chr9:131767451 nonsynonymous SNV 0.953 1 25 hm5C_associated_SNPs_106791 0 0 1 0 2 Nucleus 0.500231643921051 0.500231643921092 0.11014 8.21565038222616e-14 hm5C_site_59936 DeepMRMD:0.11014;iRNA_m5C:8.21565038222616e-14 59937 chr19 4207920 4207920 1 + C G LUAD 4207916 + 4207896 4207936 41 GCCCTGGCGGGGGACAAACTCATCCTGCACCTTCTGCAAGA GCCCTGGCGGGGGACAAACTCATCGTGCACCTTCTGCAAGA < 41bp 0.537396157574881 0.795714151675181 0.23968449 0.11179504 prediction 0.5166359882006 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4207916 chr19:4207920 nonsynonymous SNV 0.427 0 25 hm5C_associated_SNPs_106792 0 0 1 0 1 exosome 0.500231643921092 0.500231643943154 0 4.4122483444653e-11 hm5C_site_59937 DeepMRMD:0;iRNA_m5C:4.4122483444653e-11 59938 chr1 29070128 29070128 1 + T C STAD 29070126 + 29070106 29070146 41 CTGGATGCTGCTTATCGTTCCATGAACGGGAAAGGCCCCGT CTGGATGCTGCTTATCGTTCCACGAACGGGAAAGGCCCCGT < 41bp 0.529499821588904 0.787813703062069 0.053208828 0.04353136 prediction 0.516627762946331 Functional Gain - YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29070126 chr1:29070128 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_106793 0 0 1 0 0 Cytosol 0.500231655050422 0.50023208882724 0 8.6755363715163e-07 hm5C_site_59938 DeepMRMD:0;iRNA_m5C:8.6755363715163e-07 59939 chr10 118321055 118321055 1 + T A rs111319548 118321051 + 118321031 118321071 41 ATGTGGATGTTGGGGACTTGCAGATGGTTAAATTTATTTGG ATGTGGATGTTGGGGACTTGCAGAAGGTTAAATTTATTTGG < 41bp 0.575492250246287 0.833804358348151 0.492003 0.58138484 prediction 0.516624216203726 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118321051 chr10:118321055 nonsynonymous SNV 0.699 0 25 hm5C_associated_SNPs_106794 0 0 0 0 2 unknown 0.500222559965513 0.50023164392172 0.16276968 1.81679124142686e-05 hm5C_site_59939 DeepMRMD:0.16276968;iRNA_m5C:1.81679124142686e-05 59940 chr15 45427832 45427832 1 + C G rs202192396 45427831 + 45427811 45427851 41 CCCTGCTCATGTGGGCGGCGCCCGACCCCGCCACCGGGCAG CCCTGCTCATGTGGGCGGCGCGCGACCCCGCCACCGGGCAG < 41bp 0.592792346565334 0.851085119286485 0.8638752 0.88772786 prediction 0.516585545442302 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427831 chr15:45427832 nonsynonymous SNV 0.308 4 22 hm5C_associated_SNPs_106795 0 0 0 0 1 chromatin 0.500231643921085 0.500231643921013 0.0477053200000002 0 hm5C_site_59940 DeepMRMD:0.0477053200000002;iRNA_m5C:0 59941 chr10 81374061 81374061 1 + C G rs141848238 81374057 + 81374037 81374077 41 TCTTCCCCATAATCACTGACCAGCCTTGACACTCCCCTTGC TCTTCCCCATAATCACTGACCAGCGTTGACACTCCCCTTGC < 41bp 0.468242749511563 0.758291774350049 0.069851846 0.36657408 prediction 0.516583548700099 Functional Gain - SFTPA1 ENSG00000122852 UTR3 Human protein_coding chr10:81374057 chr10:81374061 . . 0 25 hm5C_associated_SNPs_106796 0 0 0 0 0 unknown 0.500231643918372 0.500231645231556 0 2.62636912218284e-09 hm5C_site_59941 DeepMRMD:0;iRNA_m5C:2.62636912218284e-09 59942 chr1 156169976 156169976 1 + T G PAAD 156169973 + 156169953 156169993 41 CCAGAGTAACACAGTCAAATCACTGGTGGCTGGTGGCTCAG CCAGAGTAACACAGTCAAATCACGGGTGGCTGGTGGCTCAG < 41bp 0.656525073263968 0.914802717830722 0.58590645 0.90374213 prediction 0.516555289133508 Functional Gain - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156169973 chr1:156169976 nonsynonymous SNV 0.999 4 24 hm5C_associated_SNPs_106797 0 0 1 0 1 chromatin 0.500231643948496 0.500231643921092 0.63567136 0 hm5C_site_59942 DeepMRMD:0.63567136;iRNA_m5C:0 59943 chr6 112671478 112671478 1 + C G LUSC 112671477 + 112671457 112671497 41 AGCATGAAGGCAGGAGCAATCCATGCTAACACCCACCTGGA AGCATGAAGGCAGGAGCAATCGATGCTAACACCCACCTGGA < 41bp 0.588532039411567 0.846808995879563 0.398821 0.81108165 prediction 0.516553912935994 Functional Gain - RFPL4B ENSG00000251258 CDS Human protein_coding chr6:112671477 chr6:112671478 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_106798 0 0 0 0 0 unknown 0.500231643921009 0.50023164240924 0.6221633 0 hm5C_site_59943 DeepMRMD:0.6221633;iRNA_m5C:0 59944 chr3 44926906 44926906 1 + C A rs148245944 44926905 + 44926885 44926925 41 CAAACGAGCAGTCCTGTGTTCCGGCGAGGACAGGTGTTTCA CAAACGAGCAGTCCTGTGTTCAGGCGAGGACAGGTGTTTCA < 41bp 0.498422003319031 0.758275349981876 0.73586345 0.8737911 prediction 0.516550699963752 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44926905 chr3:44926906 synonymous SNV . 0 22 hm5C_associated_SNPs_106799 0 0 0 0 2 exosome 0.50023164387462 0.500231875856433 0.2758553 4.63963624630637e-07 hm5C_site_59944 DeepMRMD:0.2758553;iRNA_m5C:4.63963624630637e-07 59945 chr3 136016911 136016911 1 + C A UCEC 136016910 + 136016890 136016930 41 CCGTCCGTGAGTGCCACGATCCCAGGTGGGTTGTAGGCCGG CCGTCCGTGAGTGCCACGATCACAGGTGGGTTGTAGGCCGG < 41bp 0.498555093429254 0.7582711952879 0.260965 0.6121859 prediction 0.516542390575801 Functional Gain - PCCB ENSG00000114054 CDS Human protein_coding chr3:136016910 chr3:136016911 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_106800 0 0 1 0 1 Ribosome 0.500231643162615 0.500231643813039 0.2243718 1.30084698568567e-09 hm5C_site_59945 DeepMRMD:0.2243718;iRNA_m5C:1.30084698568567e-09 Emphysema imaging phenotypes 59946 chr5 76714204 76714204 1 + C T UCEC 76714203 + 76714183 76714223 41 ACTGCTGTTCTGGAGAGTCACCACACCGCCCTGGCCTTCCA ACTGCTGTTCTGGAGAGTCACTACACCGCCCTGGCCTTCCA < 41bp 0.509459517589917 0.767728647518013 0.30086267 0.91162515 prediction 0.516538259856193 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76714203 chr5:76714204 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_106801 0 0 0 0 1 Nucleus 0.500230042387163 0.500231517380688 0.8232503 2.94998704952754e-06 hm5C_site_59946 DeepMRMD:0.8232503;iRNA_m5C:2.94998704952754e-06 59947 chr12 132241053 132241053 1 + T G LUSC 132241050 + 132241030 132241070 41 CCAGAAGAGGCTCCCACAGACTCTGCTCCCGAGAAGCCAAG CCAGAAGAGGCTCCCACAGACTCGGCTCCCGAGAAGCCAAG < 41bp 0.359975263574015 0.758266754123619 0.040130883 0.05509317 prediction 0.516533508247238 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132241050 chr12:132241053 synonymous SNV . 0 24 hm5C_associated_SNPs_106802 0 0 1 0 1 Nucleus 0.500231643896904 0.500231642244983 0 0 hm5C_site_59947 DeepMRMD:0;iRNA_m5C:0 59948 chr19 19606629 19606629 1 + T C STAD 19606627 + 19606607 19606647 41 GGTCCGAGGTGGGCAGCAGGCGTCCTCGAAGCTGGGGCCAC GGTCCGAGGTGGGCAGCAGGCGCCCTCGAAGCTGGGGCCAC < 41bp 0.501752469551986 0.760018730787966 0.5769452 0.4171575 prediction 0.51653252247196 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606627 chr19:19606629 nonsynonymous SNV 0.652 1 23 hm5C_associated_SNPs_106803 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59948 DeepMRMD:0;iRNA_m5C:0 59949 chr16 56866245 56866245 1 + C T LGG 56866244 + 56866224 56866264 41 TGACGACGATGGCACCAGCTCCCCACAAGACAGGCTCACTC TGACGACGATGGCACCAGCTCTCCACAAGACAGGCTCACTC < 41bp 0.555341879273685 0.813604872374483 0.05860862 0.92192936 prediction 0.516525986201597 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56866244 chr16:56866245 synonymous SNV . 0 22 hm5C_associated_SNPs_106804 0 0 1 0 2 Nucleus 0.50023232551526 0.500231747962372 0.84385872 0 hm5C_site_59949 DeepMRMD:0.84385872;iRNA_m5C:0 59950 chr7 54617721 54617721 1 + C G LUAD 54617717 + 54617697 54617737 41 AATGCAGGCCTTCGAAGCCTCGCCCATGTGGCTGCAGGATA AATGCAGGCCTTCGAAGCCTCGCCGATGTGGCTGCAGGATA < 41bp 0.551726722227873 0.809989595849661 0.02451548 0.20489445 prediction 0.516525747243576 Functional Gain - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54617717 chr7:54617721 synonymous SNV . 0 25 hm5C_associated_SNPs_106805 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59950 DeepMRMD:0;iRNA_m5C:0 59951 chr8 125015557 125015557 1 + C A LUAD 125015556 + 125015536 125015576 41 CTATGGCCTCCACCACTCACCCGGAGAAGCCACTGGTGACA CTATGGCCTCCACCACTCACCAGGAGAAGCCACTGGTGACA < 41bp 0.504996804868277 0.763256633338061 0.5847018 0.81512606 prediction 0.516519656939568 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125015556 chr8:125015557 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_106806 0 0 0 0 1 exosome 0.500230518797811 0.500231641590513 0.46084852 2.24558540384834e-06 hm5C_site_59951 DeepMRMD:0.46084852;iRNA_m5C:2.24558540384834e-06 59952 chr6 26021096 26021096 1 + C G LUSC 26021092 + 26021072 26021112 41 ACTATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCG ACTATCATGCCCAAGGACATCCAGGTCGCCCGCCGCATCCG < 41bp 0.52354380003422 0.781799080015453 0.13275382 0.47905174 prediction 0.516510559962466 Functional Gain - HIST1H3A ENSG00000198366 CDS Human other chr6:26021092 chr6:26021096 nonsynonymous SNV 0.751 2 25 hm5C_associated_SNPs_106807 0 0 1 0 0 exosome 0.500231643921092 0.500231643921122 0 6.15063555642337e-14 hm5C_site_59952 DeepMRMD:0;iRNA_m5C:6.15063555642337e-14 59953 chr11 57982598 57982598 1 + T G SKCM 57982595 + 57982575 57982615 41 TTGTCGTCATTGACAATTTGCTCTTGGGGACCATGGCCTAT TTGTCGTCATTGACAATTTGCTCGTGGGGACCATGGCCTAT < 41bp 0.376364051875425 0.758250828367974 0.050081104 0.025933295 prediction 0.516501656735947 Functional Gain - OR1S1 ENSG00000172774 CDS Human other chr11:57982595 chr11:57982598 nonsynonymous SNV 0.044 2 24 hm5C_associated_SNPs_106808 0 0 0 0 0 unknown 0.500231643859434 0.500231644237552 0 7.56234852516968e-10 hm5C_site_59953 DeepMRMD:0;iRNA_m5C:7.56234852516968e-10 59954 chr1 248525908 248525908 1 + C A UCEC 248525904 + 248525884 248525924 41 GAAAATGTTAACAGTGGAACCTGCCTTTCAAAAAGCTATGG GAAAATGTTAACAGTGGAACCTGCATTTCAAAAAGCTATGG < 41bp 0.378177745187075 0.758224305005457 0.090096205 0.34129387 prediction 0.516448610010913 Functional Gain - OR2T4 ENSG00000196944 CDS Human protein_coding chr1:248525904 chr1:248525908 synonymous SNV . 0 25 hm5C_associated_SNPs_106809 0 0 0 0 0 unknown 0.500233571032737 0.500231643999998 0 0 hm5C_site_59954 DeepMRMD:0;iRNA_m5C:0 59955 chr3 67048773 67048773 1 + T G rs374067910 67048771 + 67048751 67048791 41 AATAGCTGGAGTCGGGGCCCCATCGAGAAATGGCCGCGTCG AATAGCTGGAGTCGGGGCCCCAGCGAGAAATGGCCGCGTCG < 41bp 0.488514441047027 0.758208455003159 0.3534671 0.8353242 prediction 0.516416910006319 Functional Gain - KBTBD8 ENSG00000163376 UTR5 Human protein_coding chr3:67048771 chr3:67048773 . . 0 23 hm5C_associated_SNPs_106810 0 0 0 0 1 cytosol 0.5002316437922 0.500231643921532 0.6706484 2.58664423213872e-10 hm5C_site_59955 DeepMRMD:0.6706484;iRNA_m5C:2.58664423213872e-10 59956 chr3 150127539 150127539 1 + C G rs61734436 150127535 + 150127515 150127555 41 TTCGGCCCCCGCCCCCGGAGCACCCGGCGGCCCCCAGCTCG TTCGGCCCCCGCCCCCGGAGCACCGGGCGGCCCCCAGCTCG < 41bp 0.561761910094799 0.819970241743309 0.18858436 0.5732993 prediction 0.516416663297021 Functional Gain - TSC22D2 ENSG00000196428 CDS Human protein_coding chr3:150127535 chr3:150127539 synonymous SNV . 0 25 hm5C_associated_SNPs_106811 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.1465986 0 hm5C_site_59956 DeepMRMD:0.1465986;iRNA_m5C:0 59957 chr11 55135910 55135910 1 + C A LUAD 55135906 + 55135886 55135926 41 CCTGGATTGGAGGCTTTCTTCACTCATTGGTTCAATTTCTC CCTGGATTGGAGGCTTTCTTCACTAATTGGTTCAATTTCTC < 41bp 0.365141676441362 0.758205078808057 0.11875948 0.29055807 prediction 0.516410157616114 Functional Gain - OR4A15 ENSG00000181958 CDS Human protein_coding chr11:55135906 chr11:55135910 stopgain 0.728 1 25 hm5C_associated_SNPs_106812 0 0 0 0 0 unknown 0.500231643591818 0.50023164392118 0 6.58723964264141e-10 hm5C_site_59957 DeepMRMD:0;iRNA_m5C:6.58723964264141e-10 59958 chr11 640502 640502 1 + T G rs74991942 640500 + 640480 640520 41 GCGGCTGGTCAGCGCCGTCACCTGGCTGGGCTACGTCAACA GCGGCTGGTCAGCGCCGTCACCGGGCTGGGCTACGTCAACA < 41bp 0.601348403901099 0.859551530454452 0.15757579 0.86894274 prediction 0.516406253106705 Functional Gain - DRD4 ENSG00000069696 CDS Human protein_coding chr11:640500 chr11:640502 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106813 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0.73788548 0 hm5C_site_59958 DeepMRMD:0.73788548;iRNA_m5C:0 59959 chr9 90501393 90501393 1 + C G OV 90501392 + 90501372 90501412 41 ATGGGGAATTCCCAGGGAGGCCCCAGAGTCAGGCAGAAGAC ATGGGGAATTCCCAGGGAGGCGCCAGAGTCAGGCAGAAGAC < 41bp 0.587352410061172 0.845552849933801 0.85645235 0.9056451 prediction 0.51640087974526 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90501392 chr9:90501393 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_106814 0 0 0 0 0 exosome 0.5002316439211 0.500231643921092 0.0983855 0 hm5C_site_59959 DeepMRMD:0.0983855;iRNA_m5C:0 59960 chr5 78416261 78416261 1 + C A UCEC 78416257 + 78416237 78416277 41 TGGTAGCAGGAGGAGTGAGTCAGACACCTTCATACCTTAGC TGGTAGCAGGAGGAGTGAGTCAGAAACCTTCATACCTTAGC < 41bp 0.351515269298727 0.758198829930144 0.63117945 0.8587109 prediction 0.516397659860288 Functional Gain - BHMT ENSG00000145692 CDS Human protein_coding chr5:78416257 chr5:78416261 nonsynonymous SNV 0.957 4 25 hm5C_associated_SNPs_106815 0 0 0 0 1 exosome 0.500240478564604 0.500232780666627 0.4550629 0 hm5C_site_59960 DeepMRMD:0.4550629;iRNA_m5C:0 59961 chr22 29708230 29708230 1 + C G rs200682667 29708226 + 29708206 29708246 41 GGCTGCCTGGGCCCCGAAGCCAAGCCCTTTCCAGCTCCTCC GGCTGCCTGGGCCCCGAAGCCAAGGCCTTTCCAGCTCCTCC < 41bp 0.562638097850926 0.820831215275694 0.26069826 0.19450846 prediction 0.516386234849538 Functional Gain - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29708226 chr22:29708230 nonsynonymous SNV 0.969 1 25 hm5C_associated_SNPs_106816 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_59961 DeepMRMD:0;iRNA_m5C:0 59962 chr11 111385715 111385715 1 + C A LIHC 111385711 + 111385691 111385731 41 GTCAGCGTCTGCCGGTGGCGCGGCCCAGGAGGAGCAGAGGG GTCAGCGTCTGCCGGTGGCGCGGCACAGGAGGAGCAGAGGG < 41bp 0.654771653169081 0.912963408801685 0.88229847 0.8339219 prediction 0.516383511265207 Functional Gain - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111385711 chr11:111385715 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106817 0 0 0 0 1 Nucleus 0.500231643380263 0.500232088129146 0 8.89497765887981e-07 hm5C_site_59962 DeepMRMD:0;iRNA_m5C:8.89497765887981e-07 59963 chr17 79637319 79637319 1 + C A SKCM 79637315 + 79637295 79637335 41 GGGAGAGGAGCCCGACATCGCAGTCCCCAAGTTCAAACAGA GGGAGAGGAGCCCGACATCGCAGTACCCAAGTTCAAACAGA < 41bp 0.355495445153562 0.758184407024784 0.32471216 0.34128243 prediction 0.516368814049568 Functional Gain - CCDC137 ENSG00000185298 CDS Human protein_coding chr17:79637315 chr17:79637319 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_106818 0 0 1 0 1 Ribosome 0.500231755343755 0.500231643921092 0 0 hm5C_site_59963 DeepMRMD:0;iRNA_m5C:0 59964 chrX 70444443 70444443 1 + C A rs113014279 70444439 + 70444419 70444459 41 CCAGGCAACCTCCCATCCCACCCCCGACCCTGCCCTGGGCG CCAGGCAACCTCCCATCCCACCCCAGACCCTGCCCTGGGCG < 41bp 0.349386543049935 0.758182211752087 0.07312155 0.07888678 prediction 0.516364423504174 Functional Gain - BCYRN1 ENSG00000169562 UTR3 Human protein_coding chrX:70444439 chrX:70444443 . . 0 25 hm5C_associated_SNPs_106819 1 0 1 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_59964 DeepMRMD:0;iRNA_m5C:0 Charcot-Marie-Tooth, X-linked Charcot-Marie-Tooth, X-linked 59965 chr3 140281700 140281700 1 + T G LIHC 140281697 + 140281677 140281717 41 AGCAGGTGCTACATCACATCCGCTACCGCAACTGGCGTCCG AGCAGGTGCTACATCACATCCGCGACCGCAACTGGCGTCCG < 41bp 0.417122286159357 0.758179930796649 0.25859785 0.5694205 prediction 0.516359861593299 Functional Gain - CLSTN2 ENSG00000158258 CDS Human protein_coding chr3:140281697 chr3:140281700 nonsynonymous SNV 0.957 4 24 hm5C_associated_SNPs_106820 0 0 0 0 2 exosome 0.500231643921092 0.500231643920292 0.138841 0 hm5C_site_59965 DeepMRMD:0.138841;iRNA_m5C:0 59966 chr11 123810802 123810802 1 + T A UCEC 123810798 + 123810778 123810818 41 GCTTCATCCACTCCATAGTACAGATTGCATTGACTATCCAG GCTTCATCCACTCCATAGTACAGAATGCATTGACTATCCAG < 41bp 0.572733767798659 0.83090399114868 0.080604136 0.0773702 prediction 0.516340446700042 Functional Gain - OR4D5 ENSG00000171014 CDS Human protein_coding chr11:123810798 chr11:123810802 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_106821 0 0 0 0 0 exosome 0.500231643371853 0.500231643922575 0 1.10144537934787e-09 hm5C_site_59966 DeepMRMD:0;iRNA_m5C:1.10144537934787e-09 59967 chr20 34022225 34022225 1 + C A HNSC 34022221 + 34022201 34022241 41 CGTGGACCTGCCGGGCGGCGCGGTCGAAGCCCAGGCCACGG CGTGGACCTGCCGGGCGGCGCGGTAGAAGCCCAGGCCACGG < 41bp 0.640639909618233 0.89880158165729 0.6965079 0.87941056 prediction 0.516323344078114 Functional Gain - GDF5;GDF5OS ENSG00000125965;ENSG00000204183 CDS Human other chr20:34022221 chr20:34022225 stopgain 0.743 1 25 hm5C_associated_SNPs_106822 0 0 0 0 0 unknown 0.500231955436521 0.500231643921079 0.36580532 0 hm5C_site_59967 DeepMRMD:0.36580532;iRNA_m5C:0 59968 chr22 21991147 21991147 1 + C G rs150723794 21991143 + 21991123 21991163 41 CAGGACCAGGCCACAGAGCCCTGCCGCTCCCTCTACACCAA CAGGACCAGGCCACAGAGCCCTGCGGCTCCCTCTACACCAA < 41bp 0.559952188391578 0.818112471509292 0.022858799 0.025533348 prediction 0.516320566235427 Functional Gain - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21991143 chr22:21991147 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106823 0 0 0 0 0 nucleolus 0.500231643921092 0.500231643921092 0 0 hm5C_site_59968 DeepMRMD:0;iRNA_m5C:0 59969 chr10 65225490 65225490 1 + C A rs368446517 65225486 + 65225466 65225506 41 GAACCGATGAAACCTCACTCCTACCGGCCGCTCATGCTGAG GAACCGATGAAACCTCACTCCTACAGGCCGCTCATGCTGAG < 41bp 0.384636801761897 0.75815246254668 0.07172245 0.32399887 prediction 0.51630492509336 Functional Gain - JMJD1C-AS1 ENSG00000272767 ncRNA_exonic Human antisense chr10:65225486 chr10:65225490 . . 0 25 hm5C_associated_SNPs_106824 0 0 0 0 0 unknown 0.500231643981201 0.500231810330143 0 3.32697883909105e-07 hm5C_site_59969 DeepMRMD:0;iRNA_m5C:3.32697883909105e-07 59970 chr4 134073243 134073243 1 + C A STAD 134073239 + 134073219 134073259 41 CGCCGAGTCCCGGCCAAGCGCGACCCCCAGCGGCCTTATGA CGCCGAGTCCCGGCCAAGCGCGACACCCAGCGGCCTTATGA < 41bp 0.349557850384632 0.758149163146209 0.25857735 0.3466602 prediction 0.516298326292419 Functional Gain - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134073239 chr4:134073243 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_106825 0 0 0 0 0 cytosol 0.500231644070035 0.500231643920636 0 0 hm5C_site_59970 DeepMRMD:0;iRNA_m5C:0 59971 chr17 51900785 51900785 1 + C A LUAD 51900784 + 51900764 51900804 41 CAAACAGCCTCAGGGGACAGCCTGGATGTGAGGGTCCCCAG CAAACAGCCTCAGGGGACAGCATGGATGTGAGGGTCCCCAG < 41bp 0.497946286412894 0.758147613708891 0.3285623 0.49316627 prediction 0.516295227417783 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51900784 chr17:51900785 nonsynonymous SNV 0.046 0 22 hm5C_associated_SNPs_106826 0 0 0 0 0 exosome 0.500232004431639 0.500231644336089 0 0 hm5C_site_59971 DeepMRMD:0;iRNA_m5C:0 59972 chr2 209271823 209271823 1 + T A BLCA 209271819 + 209271799 209271839 41 TGGGGTTGGCTAATGCTCGGCAGCTGCCTCCTGGCCAGAGC TGGGGTTGGCTAATGCTCGGCAGCAGCCTCCTGGCCAGAGC < 41bp 0.483912979480855 0.75812659652873 0.8627054 0.7914189 prediction 0.51625319305746 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209271819 chr2:209271823 nonsynonymous SNV 0.011 1 25 hm5C_associated_SNPs_106827 0 0 0 0 1 exosome 0.500232040306442 0.500261264109996 0 5.84476071083806e-05 hm5C_site_59972 DeepMRMD:0;iRNA_m5C:5.84476071083806e-05 59973 chr15 27185194 27185194 1 + C G LUAD 27185193 + 27185173 27185213 41 CAGGTGTCCTTTTGGCTGAACCGGGAATCAGTCCCAGCCAG CAGGTGTCCTTTTGGCTGAACGGGGAATCAGTCCCAGCCAG < 41bp 0.586141581836381 0.844262786460895 0.92356765 0.9218162 prediction 0.516242409249029 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27185193 chr15:27185194 nonsynonymous SNV 0.975 5 22 hm5C_associated_SNPs_106828 0 0 0 0 1 unknown 0.500231643920616 0.500231643975121 0 1.09008801985055e-10 hm5C_site_59973 DeepMRMD:0;iRNA_m5C:1.09008801985055e-10 59974 chr16 20441054 20441054 1 + T C LUSC 20441052 + 20441032 20441072 41 CCGGAGGAGAGGCCCTCAACCCTGACGTGAGGGAGAAGTGG CCGGAGGAGAGGCCCTCAACCCCGACGTGAGGGAGAAGTGG < 41bp 0.478200767681861 0.758112833506777 0.046162367 0.05875948 prediction 0.516225667013554 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20441052 chr16:20441054 stoploss . 0 23 hm5C_associated_SNPs_106829 0 0 0 0 2 cytosol 0.500231645648019 0.500231643915789 0 0 hm5C_site_59974 DeepMRMD:0;iRNA_m5C:0 59975 chr7 142637531 142637531 1 + C A LUAD 142637530 + 142637510 142637550 41 ATGGCCCAGCAGGAAGAAGACCAGTCGTCCAAGACGGCAGC ATGGCCCAGCAGGAAGAAGACAAGTCGTCCAAGACGGCAGC < 41bp 0.498644609273799 0.758111672415918 0.25959772 0.1739273 prediction 0.516223344831836 Functional Gain - C7orf34 ENSG00000165131 CDS Human protein_coding chr7:142637530 chr7:142637531 nonsynonymous SNV 0.006 0 22 hm5C_associated_SNPs_106830 0 0 0 0 1 exosome 0.500231643924249 0.50023164391962 0 0 hm5C_site_59975 DeepMRMD:0;iRNA_m5C:0 59976 chr7 129944402 129944402 1 + C A rs3735051 129944398 + 129944378 129944418 41 ATTGGACATTCGTTTGAAAACCGGCCGATGTATGTACTGAA ATTGGACATTCGTTTGAAAACCGGACGATGTATGTACTGAA < 41bp 0.35247875858756 0.758101320025643 0.27638596 0.21006086 prediction 0.516202640051286 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129944398 chr7:129944402 nonsynonymous SNV 0.971 0 25 hm5C_associated_SNPs_106831 0 0 0 0 2 Endoplasmic reticulum 0.500231643960414 0.500231644850996 0 1.78116588145372e-09 hm5C_site_59976 DeepMRMD:0;iRNA_m5C:1.78116588145372e-09 59977 chr17 21826405 21826405 1 + C A LUAD 21826401 + 21826381 21826421 41 GCTCTGTCCTCCCTCTTACTCTGTCTCCCTTGTTTCTGAGG GCTCTGTCCTCCCTCTTACTCTGTATCCCTTGTTTCTGAGG < 41bp 0.418335870049152 0.75809666792213 0.34612083 0.3085363 prediction 0.51619333584426 Functional Gain - FAM27E5 ENSG00000178130 ncRNA_exonic Human lincRNA chr17:21826401 chr17:21826405 . . 0 25 hm5C_associated_SNPs_106832 0 0 0 0 0 unknown 0.500231643921092 0.500233427147494 0 3.56645280374934e-06 hm5C_site_59977 DeepMRMD:0;iRNA_m5C:3.56645280374934e-06 59978 chr20 21687575 21687575 1 + C G LUAD 21687571 + 21687551 21687591 41 CCCCTACCCCAGTCCCGTGTCGCCCACGGGCGCCAAGATGG CCCCTACCCCAGTCCCGTGTCGCCGACGGGCGCCAAGATGG < 41bp 0.550971939961999 0.80905218891245 0.007712394 0.11430976 prediction 0.516160497900902 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21687571 chr20:21687575 synonymous SNV . 0 25 hm5C_associated_SNPs_106833 0 0 0 0 0 unknown 0.50023164365478 0.500231643917792 0 5.26023891112004e-10 hm5C_site_59978 DeepMRMD:0;iRNA_m5C:5.26023891112004e-10 59979 chr7 98258393 98258393 1 + C A rs369029791 98258392 + 98258372 98258412 41 CTTGTGCATTGAGTGCATCCCCGCTGGTGACTAAGCTCGCA CTTGTGCATTGAGTGCATCCCAGCTGGTGACTAAGCTCGCA < 41bp 0.504269784726391 0.762341141839108 0.14238101 0.2861017 prediction 0.516142714225434 Functional Gain - NPTX2 ENSG00000106236 UTR3 Human protein_coding chr7:98258392 chr7:98258393 . . 0 22 hm5C_associated_SNPs_106834 0 0 0 0 0 exosome 0.500231643923534 0.500231626710217 0 0 hm5C_site_59979 DeepMRMD:0;iRNA_m5C:0 59980 chr11 66323637 66323637 1 + C G rs146294881 66323636 + 66323616 66323656 41 ACATTGTGAACACCCCAAAGCCGGATGAGAAGGCCATCATG ACATTGTGAACACCCCAAAGCGGGATGAGAAGGCCATCATG < 41bp 0.589742334612477 0.847810517541005 0.5045638 0.9271678 prediction 0.516136365857056 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66323636 chr11:66323637 unknown 0.987 2 22 hm5C_associated_SNPs_106835 0 0 0 0 2 Cytosol 0.500231643921092 0.500231643921092 0.845208 0 hm5C_site_59980 DeepMRMD:0.845208;iRNA_m5C:0 59981 chr16 57762401 57762401 1 + T C rs2923147 57762399 + 57762379 57762419 41 CCCGCCAGGAGAGAAACTAACATGCTGGCAGGCGGTGCGCC CCCGCCAGGAGAGAAACTAACACGCTGGCAGGCGGTGCGCC < 41bp 0.510090504573104 0.768156247725238 0.8822063 0.4903252 prediction 0.516131486304268 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57762399 chr16:57762401 nonsynonymous SNV 0.622 0 23 hm5C_associated_SNPs_106836 0 0 0 0 2 cytosol 0.500231643921093 0.500231643920822 0 0 hm5C_site_59981 DeepMRMD:0;iRNA_m5C:0 59982 chr6 28193085 28193085 1 + C G rs527628225 28193084 + 28193064 28193104 41 CTGCCCGGCCATTGTTCGTGCCGCGCTTCTAGCAACGCCGG CTGCCCGGCCATTGTTCGTGCGGCGCTTCTAGCAACGCCGG < 41bp 0.552848711916429 0.810904594188958 0.27136886 0.66591334 prediction 0.516111764545059 Functional Gain - ZSCAN9 ENSG00000137185 UTR5 Human protein_coding chr6:28193084 chr6:28193085 . . 0 22 hm5C_associated_SNPs_106837 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.33182668 0 hm5C_site_59982 DeepMRMD:0.33182668;iRNA_m5C:0 59983 chr1 23234557 23234557 1 + C T SKCM 23234556 + 23234536 23234576 41 GTTCACCGTGACCTGGCTGCCCGCAACATCCTCGTCAACAG GTTCACCGTGACCTGGCTGCCTGCAACATCCTCGTCAACAG < 41bp 0.494259617615366 0.758054812665158 0.10112187 0.20211732 prediction 0.516109625330315 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23234556 chr1:23234557 nonsynonymous SNV 0.981 5 22 hm5C_associated_SNPs_106838 0 0 0 0 0 Endoplasmic reticulum 0.500218102933132 0.50023036169357 0 2.45175208763992e-05 hm5C_site_59983 DeepMRMD:0;iRNA_m5C:2.45175208763992e-05 59984 chr17 4686436 4686436 1 + C G rs199835269 4686435 + 4686415 4686455 41 CCTCACTGAGGCTCCACTGACCGCCGGGTTACACCTGCTCC CCTCACTGAGGCTCCACTGACGGCCGGGTTACACCTGCTCC < 41bp 0.465780955419014 0.75804004920772 0.4053605 0.88538986 prediction 0.516080098415439 Functional Gain - TM4SF5 ENSG00000142484 UTR3 Human protein_coding chr17:4686435 chr17:4686436 . . 0 22 hm5C_associated_SNPs_106839 0 0 1 0 1 cytosol 0.500231643921359 0.500231643921669 0.77077972 6.20836715370388e-13 hm5C_site_59984 DeepMRMD:0.77077972;iRNA_m5C:6.20836715370388e-13 59985 chr3 52246435 52246435 1 + T C LAML 52246433 + 52246413 52246453 41 CCCAGATGATGAACTACTTCCTTGGTGAGTACCTGGGGAGC CCCAGATGATGAACTACTTCCTCGGTGAGTACCTGGGGAGC < 41bp 0.513984564118399 0.772011657717676 0.5235168 0.44819072 prediction 0.516054187198553 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52246433 chr3:52246435 synonymous SNV . 0 23 hm5C_associated_SNPs_106840 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_59985 DeepMRMD:0;iRNA_m5C:0 59986 chr19 44681557 44681557 1 + T C rs201536922 44681555 + 44681535 44681575 41 ACTTCAGTCAGGCCTCAAGTCTTCAACTTCATCAGAGTGTC ACTTCAGTCAGGCCTCAAGTCTCCAACTTCATCAGAGTGTC < 41bp 0.505533878786736 0.763559742528852 0.08716184 0.9416386 prediction 0.516051727484231 Functional Gain - ZNF226 ENSG00000167380 CDS Human protein_coding chr19:44681555 chr19:44681557 synonymous SNV . 0 23 hm5C_associated_SNPs_106841 0 0 0 0 0 Cytosol 0.500231641862102 0.500231698123368 0.8832772 1.12522532846882e-07 hm5C_site_59986 DeepMRMD:0.8832772;iRNA_m5C:1.12522532846882e-07 59987 chr12 104850993 104850993 1 + C A rs111635889 104850989 + 104850969 104851009 41 TCCACGCATCTCAGCACTTCCAGACCAACTCCGGCACCTTC TCCACGCATCTCAGCACTTCCAGAACAACTCCGGCACCTTC < 41bp 0.441674438566386 0.758019451076449 0.9027662 0.89847183 prediction 0.516038902152898 Functional Gain - CHST11 ENSG00000171310 UTR5 Human protein_coding chr12:104850989 chr12:104850993 . . 0 25 hm5C_associated_SNPs_106842 0 0 0 0 0 Nucleus 0.500228088647798 0.500232860135916 0 9.54297623612099e-06 hm5C_site_59987 DeepMRMD:0;iRNA_m5C:9.54297623612099e-06 59988 chr16 31435837 31435837 1 + T C LAML 31435835 + 31435815 31435855 41 GTCTACAATGCCATTCCCATCATCATGGGCAGCTCTGTGGG GTCTACAATGCCATTCCCATCACCATGGGCAGCTCTGTGGG < 41bp 0.488051228532326 0.758014488864511 0.41200852 0.51402694 prediction 0.516028977729023 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31435835 chr16:31435837 nonsynonymous SNV 0.013 2 23 hm5C_associated_SNPs_106843 0 0 0 0 1 nucleolus 0.500231643899581 0.500231643473556 0.0280538800000001 0 hm5C_site_59988 DeepMRMD:0.0280538800000001;iRNA_m5C:0 59989 chr6 33402968 33402968 1 + T G OV 33402966 + 33402946 33402986 41 GCTTTAAGGAGTCACACTCTCATGAGTCCTTGCTGAGTCCT GCTTTAAGGAGTCACACTCTCAGGAGTCCTTGCTGAGTCCT < 41bp 0.621734148909747 0.879746313382209 0.253647 0.9352283 prediction 0.516024328944924 Functional Gain - SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33402966 chr6:33402968 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_106844 0 0 1 0 1 chromatin 0.500232553079345 0.500231643920901 0.8704566 0 hm5C_site_59989 DeepMRMD:0.8704566;iRNA_m5C:0 59990 chr2 1418211 1418211 1 + C G OV 1418207 + 1418187 1418227 41 GCGCTCGCTGTGCTGTCTGTCACGCTGGTTATGGCCTGCAC GCGCTCGCTGTGCTGTCTGTCACGGTGGTTATGGCCTGCAC < 41bp 0.464176205849171 0.758012143984549 0.09227267 0.25929594 prediction 0.516024287969099 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1418207 chr2:1418211 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_106845 0 0 0 0 1 exosome 0.500252340751836 0.500231671015235 0 0 hm5C_site_59990 DeepMRMD:0;iRNA_m5C:0 59991 chr14 86089443 86089443 1 + C A LUAD 86089439 + 86089419 86089459 41 AACGGCAGCAACACAGCGTCCAGCCATGAGCAGACGACGTC AACGGCAGCAACACAGCGTCCAGCAATGAGCAGACGACGTC < 41bp 0.350700828630696 0.758004550597954 0.12641326 0.10772008 prediction 0.516009101195908 Functional Gain - FLRT2 ENSG00000185070 CDS Human protein_coding chr14:86089439 chr14:86089443 nonsynonymous SNV 0.874 1 25 hm5C_associated_SNPs_106846 0 0 0 0 0 Ribosome 0.500231716042911 0.500231414671631 0 0 hm5C_site_59991 DeepMRMD:0;iRNA_m5C:0 59992 chr7 129122857 129122857 1 + C T SKCM 129122856 + 129122836 129122876 41 ATTTACCAGAAAGTGCGTCACCGCATGAACGATGACTGGGC ATTTACCAGAAAGTGCGTCACTGCATGAACGATGACTGGGC < 41bp 0.516756579250602 0.774757065438072 0.22897497 0.44834378 prediction 0.51600097237494 Functional Gain - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129122856 chr7:129122857 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_106847 0 0 0 0 1 Nucleus 0.500245424028496 0.500234274323347 0 0 hm5C_site_59992 DeepMRMD:0;iRNA_m5C:0 59993 chr3 31674613 31674613 1 + C T SKCM 31674612 + 31674592 31674632 41 CCTCGAGTCACCAACATTTTCCCAAAACAGAAGTATTTGTC CCTCGAGTCACCAACATTTTCTCAAAACAGAAGTATTTGTC < 41bp 0.511900877120134 0.769900436224251 0.047498494 0.07950258 prediction 0.515999118208234 Functional Gain - STT3B ENSG00000163527 CDS Human protein_coding chr3:31674612 chr3:31674613 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_106848 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921095 0 5.10702591327572e-15 hm5C_site_59993 DeepMRMD:0;iRNA_m5C:5.10702591327572e-15 59994 chr11 61727485 61727485 1 + C A rs17854138 61727481 + 61727461 61727501 41 CTGCTTCCGCCCAGTTCCGTCGAGCCTCCTTTATGGGCTCC CTGCTTCCGCCCAGTTCCGTCGAGACTCCTTTATGGGCTCC < 41bp 0.37434490969422 0.75799425343724 0.15261322 0.2914576 prediction 0.51598850687448 Functional Gain - BEST1 ENSG00000167995 CDS Human protein_coding chr11:61727481 chr11:61727485 nonsynonymous SNV 0.094 1 25 hm5C_associated_SNPs_106849 0 0 0 0 1 chromatin 0.500231472756121 0.500231643921092 0 3.42329942171204e-07 hm5C_site_59994 DeepMRMD:0;iRNA_m5C:3.42329942171204e-07 59995 chr17 6026041 6026041 1 + C A rs189838938 6026037 + 6026017 6026057 41 TCTGGGGAGAGCAACAGCACCAGGCTTTTCCTGGTAGTTGG TCTGGGGAGAGCAACAGCACCAGGATTTTCCTGGTAGTTGG < 41bp 0.630416055827444 0.888402814300339 0.8484024 0.8738004 prediction 0.515973516945789 Functional Gain - WSCD1 ENSG00000179314 UTR3 Human protein_coding chr17:6026037 chr17:6026041 . . 0 25 hm5C_associated_SNPs_106850 0 0 0 0 0 exosome 0.500231643944071 0.50023164392281 0.0507960000000001 0 hm5C_site_59995 DeepMRMD:0.0507960000000001;iRNA_m5C:0 Hand grip strength 59996 chr1 159176132 159176132 1 + C G LIHC 159176128 + 159176108 159176148 41 AATTTTGCACTGTGTGGCTACGCCCCTGCTCCTCGCCCTAT AATTTTGCACTGTGTGGCTACGCCGCTGCTCCTCGCCCTAT < 41bp 0.550735682170355 0.808714882625001 0.21302631 0.24035788 prediction 0.515958400909293 Functional Gain - ACKR1 ENSG00000213088 CDS Human protein_coding chr1:159176128 chr1:159176132 synonymous SNV . 0 25 hm5C_associated_SNPs_106851 0 0 0 0 0 Endoplasmic reticulum 0.500231643543045 0.500231655174439 0 2.32627888063774e-08 hm5C_site_59996 DeepMRMD:0;iRNA_m5C:2.32627888063774e-08 59997 chr4 1374774 1374774 1 + C G rs28522910 1374773 + 1374753 1374793 41 AGCTGCAGAAGCAGGAGCGCCCGGGTAGGTCTGGGCAAGGC AGCTGCAGAAGCAGGAGCGCCGGGGTAGGTCTGGGCAAGGC < 41bp 0.587593668486198 0.845566967903763 0.7876622 0.8875164 prediction 0.515946598835129 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1374773 chr4:1374774 nonsynonymous SNV 0.008 2 22 hm5C_associated_SNPs_106852 0 0 1 0 1 Nucleus 0.50023164392111 0.500231643921092 0.1997084 0 hm5C_site_59997 DeepMRMD:0.1997084;iRNA_m5C:0 59998 chr17 46972655 46972655 1 + C A GBM 46972651 + 46972631 46972671 41 TGGTGTGGCTGGTTCAGGGGCTGGCATTGGAACCGTGTTTG TGGTGTGGCTGGTTCAGGGGCTGGAATTGGAACCGTGTTTG < 41bp 0.666037114734971 0.924008576980885 0.2754212 0.41895628 prediction 0.515942924491829 Functional Gain - ATP5G1 ENSG00000159199 CDS Human protein_coding chr17:46972651 chr17:46972655 synonymous SNV . 0 25 hm5C_associated_SNPs_106853 0 0 1 0 1 Ribosome 0.500231643762442 0.500230891598472 0 0 hm5C_site_59998 DeepMRMD:0;iRNA_m5C:0 59999 chr14 23239013 23239013 1 + C G LUAD 23239012 + 23238992 23239032 41 TTTTCCAGGTACAGTCTTTGCCCGCTGCCTGATTTTTCCTC TTTTCCAGGTACAGTCTTTGCGCGCTGCCTGATTTTTCCTC < 41bp 0.445556972041167 0.757963781025437 0.041772217 0.043050498 prediction 0.515927562050873 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239012 chr14:23239013 synonymous SNV . 0 22 hm5C_associated_SNPs_106854 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921913 0 1.64157576421076e-12 hm5C_site_59999 DeepMRMD:0;iRNA_m5C:1.64157576421076e-12 60000 chr16 88805282 88805282 1 + C G rs57044148 88805281 + 88805261 88805301 41 AGGGCCACAGGACAGCCTCCCCGGGCACAGGCCCCAGCCGT AGGGCCACAGGACAGCCTCCCGGGGCACAGGCCCCAGCCGT < 41bp 0.562604365761433 0.820563052449632 0.8913673 0.9360255 prediction 0.515917373376399 Functional Gain - LOC100289580 ENSG00000224888 ncRNA_exonic Human antisense chr16:88805281 chr16:88805282 . . 0 22 hm5C_associated_SNPs_106855 0 0 0 0 0 unknown 0.500231623425195 0.500229809522579 0.0893164 0 hm5C_site_60000 DeepMRMD:0.0893164;iRNA_m5C:0 60001 chr10 47756066 47756066 1 + C G rs142447427 47756065 + 47756045 47756085 41 GATGTGAGCAGCTTTGTGGACCCGGCACTGGCCCTCCAAGA GATGTGAGCAGCTTTGTGGACGCGGCACTGGCCCTCCAAGA < 41bp 0.597707916838719 0.85566647263767 0.29915428 0.52336127 prediction 0.515917111597902 Functional Gain - ANXA8L1 ENSG00000186807 CDS Human other chr10:47756065 chr10:47756066 nonsynonymous SNV 0.775 1 22 hm5C_associated_SNPs_106856 0 0 0 0 2 nucleus 0.500231643780692 0.500231643921094 0.04672254 2.80803158503318e-10 hm5C_site_60001 DeepMRMD:0.04672254;iRNA_m5C:2.80803158503318e-10 60002 chr3 183957289 183957289 1 + C A OV 183957288 + 183957268 183957308 41 AAACCAAGTCCCCGGCCGACCCCGGAAACCCTCTTTGGGTG AAACCAAGTCCCCGGCCGACCACGGAAACCCTCTTTGGGTG < 41bp 0.495100821911922 0.757958326867995 0.259593 0.3520585 prediction 0.51591665373599 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183957288 chr3:183957289 synonymous SNV . 0 22 hm5C_associated_SNPs_106857 0 0 0 0 1 exosome 0.500231643921687 0.500231643921609 0 0 hm5C_site_60002 DeepMRMD:0;iRNA_m5C:0 60003 chr16 90110304 90110304 1 + C G rs3743819 90110303 + 90110283 90110323 41 CGGGAACGGGCAGGCAGCCTCCCGCTGCCAGTCTTCGCTCT CGGGAACGGGCAGGCAGCCTCGCGCTGCCAGTCTTCGCTCT < 41bp 0.580965210040641 0.838913852302211 0.29902396 0.71498615 prediction 0.515897284523141 Functional Gain - URAHP ENSG00000222019 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:90110303 chr16:90110304 . . 0 22 hm5C_associated_SNPs_106858 0 0 1 0 0 unknown 0.500231643921092 0.500231643921433 0.4299723 6.82121026329696e-13 hm5C_site_60003 DeepMRMD:0.4299723;iRNA_m5C:6.82121026329696e-13 60004 chr5 179193073 179193073 1 + C A PAAD 179193072 + 179193052 179193092 41 ATTCCACACCTCTGGTCAGCCCCGGGCGGACAATCCCAGTC ATTCCACACCTCTGGTCAGCCACGGGCGGACAATCCCAGTC < 41bp 0.504052224888282 0.761995159717965 0.05053559 0.20472613 prediction 0.515885869659366 Functional Gain - MAML1 ENSG00000161021 CDS Human protein_coding chr5:179193072 chr5:179193073 synonymous SNV . 0 22 hm5C_associated_SNPs_106859 0 0 1 0 0 Ribosome 0.500231643921092 0.500231644606073 0 1.36996058941463e-09 hm5C_site_60004 DeepMRMD:0;iRNA_m5C:1.36996058941463e-09 60005 chr20 43246949 43246949 1 + C G BLCA 43246948 + 43246928 43246968 41 GGACAGGTGGAGGGAAGCGCCCCAGACAAGGAAGCTGGCAA GGACAGGTGGAGGGAAGCGCCGCAGACAAGGAAGCTGGCAA < 41bp 0.45756758955348 0.757930803845084 0.21725538 0.4285536 prediction 0.515861607690169 Functional Gain - PKIG ENSG00000168734 CDS Human protein_coding chr20:43246948 chr20:43246949 nonsynonymous SNV 0.252 0 22 hm5C_associated_SNPs_106860 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60005 DeepMRMD:0;iRNA_m5C:0 60006 chr3 69987151 69987151 1 + C T STAD 69987150 + 69987130 69987170 41 CGGTGCCGGGGAGCAGCGCACCCAACAGCCCCATGGCTATG CGGTGCCGGGGAGCAGCGCACTCAACAGCCCCATGGCTATG < 41bp 0.510954187343817 0.76888332714993 0.10324994 0.16477883 prediction 0.515858279612227 Functional Gain - MITF ENSG00000187098 CDS Human protein_coding chr3:69987150 chr3:69987151 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_106861 0 0 1 0 1 Cytosol 0.500231643921167 0.50023164391055 0 0 hm5C_site_60006 DeepMRMD:0;iRNA_m5C:0 60007 chr12 113402086 113402086 1 + T C UCEC 113402084 + 113402064 113402104 41 GCTGGGGACCTTGACAAGTTCATCAGTGAATTTCTCCAGCC GCTGGGGACCTTGACAAGTTCACCAGTGAATTTCTCCAGCC < 41bp 0.54381310800779 0.801739091621686 0.051415265 0.071626544 prediction 0.515851967227793 Functional Gain - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113402084 chr12:113402086 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106862 0 0 0 0 1 Nucleus 0.500231640317773 0.500231637180688 0 0 hm5C_site_60007 DeepMRMD:0;iRNA_m5C:0 60008 chr16 88061163 88061163 1 + C T COAD 88061162 + 88061142 88061182 41 CAGAGCATCGACTCCAAGTGCCGCACGGCGTGGCGGCGCAA CAGAGCATCGACTCCAAGTGCTGCACGGCGTGGCGGCGCAA < 41bp 0.501152176352119 0.759076625230876 0.10087192 0.144036 prediction 0.515848897757515 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88061162 chr16:88061163 nonsynonymous SNV 0.981 4 22 hm5C_associated_SNPs_106863 0 0 1 0 2 Cytosol 0.500231649541487 0.500231647313923 0 0 hm5C_site_60008 DeepMRMD:0;iRNA_m5C:0 60009 chr11 55653245 55653245 1 + C A LUAD 55653244 + 55653224 55653264 41 ACAAGAGCCTGCTCTGTTTGCCGTGCTCCAACTCTCAGGAG ACAAGAGCCTGCTCTGTTTGCAGTGCTCCAACTCTCAGGAG < 41bp 0.49966083971092 0.757923882916426 0.22487152 0.2745106 prediction 0.515847765832852 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653244 chr11:55653245 nonsynonymous SNV 0.065 0 22 hm5C_associated_SNPs_106864 0 0 0 0 1 unknown 0.500231643918543 0.500231643920592 0 4.09872136231115e-12 hm5C_site_60009 DeepMRMD:0;iRNA_m5C:4.09872136231115e-12 60010 chr7 29724813 29724813 1 + C G rs531589644 29724812 + 29724792 29724832 41 CTGCTTGGCGCTCATGTCCGCCCTGCTCCGGACCGGGCCGC CTGCTTGGCGCTCATGTCCGCGCTGCTCCGGACCGGGCCGC < 41bp 0.471934018696816 0.757916670600772 0.09118828 0.1576995 prediction 0.515833341201544 Functional Gain - DPY19L2P3;ZNRF2P2 ENSG00000225264;ENSG00000227855 ncRNA_exonic Human other chr7:29724812 chr7:29724813 . . 0 22 hm5C_associated_SNPs_106865 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_60010 DeepMRMD:0;iRNA_m5C:0 60011 chr12 104473259 104473259 1 + T C UCEC 104473257 + 104473237 104473277 41 TTTATGAGTTGGAGCTACAGCATGGCTCTGGTGTTGTGGGT TTTATGAGTTGGAGCTACAGCACGGCTCTGGTGTTGTGGGT < 41bp 0.49216563720658 0.757916506966344 0.0973168 0.11395216 prediction 0.515833013932688 Functional Gain - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104473257 chr12:104473259 synonymous SNV . 0 23 hm5C_associated_SNPs_106866 0 0 1 0 1 Cytosol 0.500231643886633 0.50023164388461 0 0 hm5C_site_60011 DeepMRMD:0;iRNA_m5C:0 60012 chr1 158450659 158450659 1 + T G PRAD 158450656 + 158450636 158450676 41 AGTGTTGGGCAAGAAAGGTTCTCTAAAACTATATAATTGAA AGTGTTGGGCAAGAAAGGTTCTCGAAAACTATATAATTGAA < 41bp 0.430755366995323 0.757915890516589 0.9289998 0.52269197 prediction 0.515831781033178 Functional Gain - OR10R2 ENSG00000198965 CDS Human protein_coding chr1:158450656 chr1:158450659 nonsynonymous SNV 0.026 1 24 hm5C_associated_SNPs_106867 0 0 0 0 0 unknown 0.500231643921325 0.500231655803416 0 2.37641832878666e-08 hm5C_site_60012 DeepMRMD:0;iRNA_m5C:2.37641832878666e-08 60013 chr19 51628287 51628287 1 + C G UCEC 51628283 + 51628263 51628303 41 GGAGGGAGAGGGCGGAAGGACAGACAAGTAAACTGCTGACG GGAGGGAGAGGGCGGAAGGACAGAGAAGTAAACTGCTGACG < 41bp 0.56741512340795 0.825330475862853 0.49170145 0.65288484 prediction 0.515830704909807 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51628283 chr19:51628287 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_106868 0 0 0 0 0 exosome 0.500231632056277 0.500231774752999 0.30576968 2.85393443988369e-07 hm5C_site_60013 DeepMRMD:0.30576968;iRNA_m5C:2.85393443988369e-07 60014 chrX 23398156 23398156 1 + T A CESC 23398152 + 23398132 23398172 41 AAGATTTCCAGAAGACCAGCCGCGTATCAGAACGTTACCTG AAGATTTCCAGAAGACCAGCCGCGAATCAGAACGTTACCTG < 41bp 0.421713404370335 0.757906610714831 0.15047458 0.90020305 prediction 0.515813221429662 Functional Gain - PTCHD1 ENSG00000165186 CDS Human protein_coding chrX:23398152 chrX:23398156 nonsynonymous SNV 0.979 4 25 hm5C_associated_SNPs_106869 0 0 0 0 0 exosome 0.500231647278413 0.500231643694478 0.8004061 0 hm5C_site_60014 DeepMRMD:0.8004061;iRNA_m5C:0 60015 chr16 28913653 28913653 1 + C T BLCA 28913652 + 28913632 28913672 41 ATGGACCGCCCCCCCCGGAGCCCCAAGGAGCCCCTCATCAG ATGGACCGCCCCCCCCGGAGCTCCAAGGAGCCCCTCATCAG < 41bp 0.480990654882647 0.757905314343888 0.12850744 0.8109748 prediction 0.515810628687776 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28913652 chr16:28913653 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_106870 0 0 0 0 1 chromatin 0.500231643921093 0.500231643921093 0.6219496 2.22044604925031e-16 hm5C_site_60015 DeepMRMD:0.6219496;iRNA_m5C:2.22044604925031e-16 60016 chr7 100662116 100662116 1 + C G rs60210838 100662115 + 100662095 100662135 41 GGGGCTGTAAGCCTCTCCATCCGGGAGCTTCCAGACTCCCA GGGGCTGTAAGCCTCTCCATCGGGGAGCTTCCAGACTCCCA < 41bp 0.488781863599955 0.757896033100335 0.94513905 0.96932995 prediction 0.51579206620067 Functional Gain - MUC12 ENSG00000205277 UTR3 Human protein_coding chr7:100662115 chr7:100662116 . . 0 22 hm5C_associated_SNPs_106871 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.0483818 0 hm5C_site_60016 DeepMRMD:0.0483818;iRNA_m5C:0 60017 chr11 6265533 6265533 1 + T G rs61746457 6265530 + 6265510 6265550 41 GTGGCAGACTCGAGAGTGGCCAATGCCCGAGGACCTGGCTG GTGGCAGACTCGAGAGTGGCCAAGGCCCGAGGACCTGGCTG < 41bp 0.610112438429741 0.868007730525601 0.3072167 0.7439543 prediction 0.515790584191719 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6265530 chr11:6265533 nonsynonymous SNV 0.877 1 24 hm5C_associated_SNPs_106872 0 0 0 0 0 exosome 0.500231643954396 0.500231643921092 0.4879086 0 hm5C_site_60017 DeepMRMD:0.4879086;iRNA_m5C:0 60018 chr16 76523688 76523688 1 + T C LIHC 76523686 + 76523666 76523706 41 TTTTTCGAGTATGTGGCCAGCATGGAGCAACTTCAGGCCAC TTTTTCGAGTATGTGGCCAGCACGGAGCAACTTCAGGCCAC < 41bp 0.498785332969162 0.757887076722804 0.6186476 0.65910846 prediction 0.515774153445607 Functional Gain - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76523686 chr16:76523688 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_106873 0 0 0 0 1 exosome 0.500231643922089 0.500231643921097 0.0809217200000001 0 hm5C_site_60018 DeepMRMD:0.0809217200000001;iRNA_m5C:0 60019 chr2 238434337 238434337 1 + C A HNSC 238434333 + 238434313 238434353 41 ACTGGGGCCTCTGGGTGCCACTCCCATCCGGAAGAGCAGCC ACTGGGGCCTCTGGGTGCCACTCCAATCCGGAAGAGCAGCC < 41bp 0.328457980025528 0.757887011706858 0.38481864 0.9572997 prediction 0.515774023413716 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238434333 chr2:238434337 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106874 0 0 0 0 1 Nucleus 0.500231644757045 0.500231643920326 0.9145994 0 hm5C_site_60019 DeepMRMD:0.9145994;iRNA_m5C:0 60020 chr3 138668400 138668400 1 + T G rs72976938 138668398 + 138668378 138668418 41 GAAGAAGAGGATGCCTGATGCGTGCACCCTGGGAAGGGCTG GAAGAAGAGGATGCCTGATGCGGGCACCCTGGGAAGGGCTG < 41bp 0.401095923354692 0.757880341345106 0.23660672 0.89534533 prediction 0.515760682690213 Functional Gain - FOXL2NB ENSG00000206262 CDS Human protein_coding chr3:138668398 chr3:138668400 nonsynonymous SNV 0.005 1 23 hm5C_associated_SNPs_106875 0 0 0 0 2 Nucleus 0.500231643921091 0.500231643925038 0.79069066 7.89368570508486e-12 hm5C_site_60020 DeepMRMD:0.79069066;iRNA_m5C:7.89368570508486e-12 60021 chr1 171250044 171250044 1 + C T rs742350 171250043 + 171250023 171250063 41 GTTGAGAAATTCCCTCCCAACCCCAATTGTGACTTGGTTGA GTTGAGAAATTCCCTCCCAACTCCAATTGTGACTTGGTTGA < 41bp 0.515094171527297 0.772964274299733 0.048010796 0.9561015 prediction 0.515740205544872 Functional Gain - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171250043 chr1:171250044 synonymous SNV . 0 22 hm5C_associated_SNPs_106876 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921053 0.912203 0 hm5C_site_60021 DeepMRMD:0.912203;iRNA_m5C:0 60022 chr6 43041648 43041648 1 + T C KIRP 43041646 + 43041626 43041666 41 GTTTTCCATTGTAGCAGCAACATGAAGCGAGCAGCCTCCTT GTTTTCCATTGTAGCAGCAACACGAAGCGAGCAGCCTCCTT < 41bp 0.510300693570148 0.768167900060207 0.09210494 0.110260874 prediction 0.515734412980118 Functional Gain - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43041646 chr6:43041648 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_106877 0 0 1 0 2 Cytosol 0.500231643924476 0.500231645717637 0 3.58632079588972e-09 hm5C_site_60022 DeepMRMD:0;iRNA_m5C:3.58632079588972e-09 60023 chr16 50733483 50733483 1 + T G CHOL 50733481 + 50733461 50733501 41 GTCTCAGGGTCCCTGGAAGGCTTCGAGAGTGTCCTGGACTG GTCTCAGGGTCCCTGGAAGGCTGCGAGAGTGTCCTGGACTG < 41bp 0.609825658555112 0.867685950202501 0.3120341 0.39535332 prediction 0.515720583294778 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50733481 chr16:50733483 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_106878 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60023 DeepMRMD:0;iRNA_m5C:0 60024 chr1 148932902 148932902 1 + C A HNSC 148932898 + 148932878 148932918 41 TGAGGTACAGGCTCAGTCTGCGGCCAAGACTCCGTCCTGCA TGAGGTACAGGCTCAGTCTGCGGCAAAGACTCCGTCCTGCA < 41bp 0.655190086971787 0.913048228573976 0.62449986 0.5513727 prediction 0.515716283204379 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932898 chr1:148932902 . . 0 25 hm5C_associated_SNPs_106879 0 0 0 1 1 unknown 0.500231643653006 0.500231643921749 0 5.37486499752049e-10 hm5C_site_60024 DeepMRMD:0;iRNA_m5C:5.37486499752049e-10 60025 chr10 99995212 99995212 1 + T C LUAD 99995210 + 99995190 99995230 41 GCGTTGGGTATTAAACACACCATGGTGAAGATTCGTCCCTT GCGTTGGGTATTAAACACACCACGGTGAAGATTCGTCCCTT < 41bp 0.509948898242823 0.767799762349526 0.036452204 0.038871914 prediction 0.515701728213405 Functional Gain - R3HCC1L ENSG00000166024 CDS Human protein_coding chr10:99995210 chr10:99995212 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_106880 0 0 1 0 2 Nucleus 0.500231643921418 0.500231643926306 0 9.7755137318245e-12 hm5C_site_60025 DeepMRMD:0;iRNA_m5C:9.7755137318245e-12 60026 chr11 6415726 6415726 1 + T G GBM 6415724 + 6415704 6415744 41 CGCCCTGCCGTCTGGCTACTCTTTGTGCCCAGCTCTCTGCC CGCCCTGCCGTCTGGCTACTCTGTGTGCCCAGCTCTCTGCC < 41bp 0.415218880061198 0.757848579998993 0.17650858 0.16317749 prediction 0.515697159997987 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6415724 chr11:6415726 synonymous SNV . 0 23 hm5C_associated_SNPs_106881 0 0 1 1 0 Endoplasmic reticulum 0.500231643920585 0.500231640576224 0 0 hm5C_site_60026 DeepMRMD:0;iRNA_m5C:0 60027 chr19 13928067 13928067 1 + C G rs139676736 13928066 + 13928046 13928086 41 CTCCACCTGCATCACCAACACCGAAGGATGGGTGGGGCACC CTCCACCTGCATCACCAACACGGAAGGATGGGTGGGGCACC < 41bp 0.601265052013974 0.859111880413623 0.34304506 0.7650157 prediction 0.515693656799297 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13928066 chr19:13928067 synonymous SNV . 0 22 hm5C_associated_SNPs_106882 0 0 0 0 1 chromatin 0.500231643921103 0.500231643921092 0.5300314 0 hm5C_site_60027 DeepMRMD:0.5300314;iRNA_m5C:0 60028 chr7 157657058 157657058 1 + C A rs573580551 157657054 + 157657034 157657074 41 CTGTATCAGGCAGATGTTTCCTCCCGGGCTCCACCTGGGGA CTGTATCAGGCAGATGTTTCCTCCAGGGCTCCACCTGGGGA < 41bp 0.391769025371736 0.757844728745563 0.15783435 0.9429885 prediction 0.515689457491127 Functional Gain - LOC100506585 ENSG00000233038 ncRNA_exonic Human antisense chr7:157657054 chr7:157657058 . . 0 25 hm5C_associated_SNPs_106883 0 0 0 0 0 unknown 0.500231643917074 0.500231643955378 0.885977 7.66071650559752e-11 hm5C_site_60028 DeepMRMD:0.885977;iRNA_m5C:7.66071650559752e-11 60029 chr17 14204888 14204888 1 + T A rs200257944 14204884 + 14204864 14204904 41 CTTGCCTCGATGTCCCCGGCCGGCTCCTACCGCAGCCGCCG CTTGCCTCGATGTCCCCGGCCGGCACCTACCGCAGCCGCCG < 41bp 0.580049656029207 0.837891179840444 0.35615718 0.14500299 prediction 0.515683047622474 Functional Gain - HS3ST3B1 ENSG00000125430 CDS Human protein_coding chr17:14204884 chr17:14204888 nonsynonymous SNV 0.979 1 25 hm5C_associated_SNPs_106884 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_60029 DeepMRMD:0;iRNA_m5C:0 60030 chr2 190531044 190531044 1 + C G LUAD 190531040 + 190531020 190531060 41 ACACTTGAGGGGTGTTTTGACTACCCAGCCTGTGGAAGATG ACACTTGAGGGGTGTTTTGACTACGCAGCCTGTGGAAGATG < 41bp 0.488664154428419 0.757838162657681 0.03798178 0.05429682 prediction 0.515676325315362 Functional Gain - ASNSD1 ENSG00000138381 CDS Human protein_coding chr2:190531040 chr2:190531044 synonymous SNV . 0 25 hm5C_associated_SNPs_106885 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921094 0 2.22044604925031e-15 hm5C_site_60030 DeepMRMD:0;iRNA_m5C:2.22044604925031e-15 60031 chr2 219879586 219879586 1 + C A rs115479175 219879582 + 219879562 219879602 41 ACCTGAAAGTGCGCAACACACACCCGAAGAGAATGCGCGCA ACCTGAAAGTGCGCAACACACACCAGAAGAGAATGCGCGCA < 41bp 0.643269014363527 0.901106325621081 0.0722878 0.07933402 prediction 0.515674622515109 Functional Gain - LOC100129175 ENSG00000224090 ncRNA_exonic Human antisense chr2:219879582 chr2:219879586 . . 0 25 hm5C_associated_SNPs_106886 0 0 0 0 0 unknown 0.500231636151999 0.500231629121037 0 0 hm5C_site_60031 DeepMRMD:0;iRNA_m5C:0 60032 chr4 184938814 184938814 1 + T G rs554939333 184938811 + 184938791 184938831 41 GCTCCCAGTCTGTGGTTAAACGGTGCCACAGAACTGATCCT GCTCCCAGTCTGTGGTTAAACGGGGCCACAGAACTGATCCT < 41bp 0.590133871301898 0.847966200260423 0.18505132 0.94246215 prediction 0.515664657917051 Functional Gain - STOX2 ENSG00000173320 UTR3 Human protein_coding chr4:184938811 chr4:184938814 . . 0 24 hm5C_associated_SNPs_106887 0 0 0 0 0 exosome 0.50023164390672 0.500231643921092 0.8849243 2.87441181967552e-11 hm5C_site_60032 DeepMRMD:0.8849243;iRNA_m5C:2.87441181967552e-11 60033 chr7 121650423 121650423 1 + T G UCEC 121650420 + 121650400 121650440 41 GGAAAAGACATTGAAGAAGGCGCTATTGTGAATCCTGGTAG GGAAAAGACATTGAAGAAGGCGCGATTGTGAATCCTGGTAG < 41bp 0.394410651493312 0.757821004157056 0.40419394 0.435157 prediction 0.515642008314111 Functional Gain - PTPRZ1 ENSG00000106278 CDS Human protein_coding chr7:121650420 chr7:121650423 synonymous SNV . 0 24 hm5C_associated_SNPs_106888 0 0 0 0 1 exosome 0.500231643843548 0.500231643849773 0 1.24493748643317e-11 hm5C_site_60033 DeepMRMD:0;iRNA_m5C:1.24493748643317e-11 60034 chr3 138153427 138153427 1 + C G rs114100179 138153426 + 138153406 138153446 41 GAGCTGCGGACTCACTGGAGCCGAGAACTGGGGCGGCGCGG GAGCTGCGGACTCACTGGAGCGGAGAACTGGGGCGGCGCGG < 41bp 0.568914360315169 0.826723372498223 0.8681695 0.9255848 prediction 0.515618024366109 Functional Gain - ESYT3 ENSG00000158220 upstream Human protein_coding chr3:138153426 chr3:138153427 . . 0 22 hm5C_associated_SNPs_106889 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643921093 0.1148306 2.22044604925031e-16 hm5C_site_60034 DeepMRMD:0.1148306;iRNA_m5C:2.22044604925031e-16 60035 chrX 34961595 34961595 1 + C G rs140552662 34961594 + 34961574 34961614 41 CCAGTCGCCGCCCAGAGCCTCCCAAGACTCGGGTGTCCAGT CCAGTCGCCGCCCAGAGCCTCGCAAGACTCGGGTGTCCAGT < 41bp 0.439430005761548 0.757808433653406 0.018388897 0.14580923 prediction 0.515616867306812 Functional Gain - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961594 chrX:34961595 nonsynonymous SNV 0.003 3 22 hm5C_associated_SNPs_106890 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_60035 DeepMRMD:0;iRNA_m5C:0 60036 chr19 18778984 18778984 1 + C G rs372570185 18778983 + 18778963 18779003 41 CTTCCCGCTCATGCAGTCGTCCGAGCTGGTGGACAGCGTGC CTTCCCGCTCATGCAGTCGTCGGAGCTGGTGGACAGCGTGC < 41bp 0.442334319422982 0.757800668118117 0.34141243 0.834625 prediction 0.515601336236233 Functional Gain - KLHL26 ENSG00000167487 CDS Human protein_coding chr19:18778983 chr19:18778984 synonymous SNV . 0 22 hm5C_associated_SNPs_106891 0 0 0 0 0 chromatin 0.500231635008682 0.500231643920798 0.66925 1.78242316462018e-08 hm5C_site_60036 DeepMRMD:0.66925;iRNA_m5C:1.78242316462018e-08 60037 chr5 29172338 29172338 1 + C A rs545932118 29172334 + 29172314 29172354 41 AAATTACACAGGCGCGGTGGCGGGCGCCTATAGTCCCAGCT AAATTACACAGGCGCGGTGGCGGGAGCCTATAGTCCCAGCT < 41bp 0.432319324769639 0.757797952586746 0.8443458 0.89964974 prediction 0.515595905173493 Functional Gain - LINC02109 ENSG00000259786 ncRNA_exonic Human lincRNA chr5:29172334 chr5:29172338 . . 0 25 hm5C_associated_SNPs_106892 0 0 0 0 0 unknown 0.500231600093359 0.500245078406874 0.11060788 2.69566270296728e-05 hm5C_site_60037 DeepMRMD:0.11060788;iRNA_m5C:2.69566270296728e-05 60038 chr12 113596723 113596723 1 + C G BLCA 113596722 + 113596702 113596742 41 TGCCCTTCTTGGAGCGGGCACCCCGGCCGAAGGCGCCCTGC TGCCCTTCTTGGAGCGGGCACGCCGGCCGAAGGCGCCCTGC < 41bp 0.570839334975992 0.828625758721853 0.525444 0.71669716 prediction 0.515572847491721 Functional Gain - DDX54 ENSG00000123064 CDS Human protein_coding chr12:113596722 chr12:113596723 nonsynonymous SNV 0.079 1 22 hm5C_associated_SNPs_106893 0 0 0 0 0 Ribosome 0.500231643921093 0.500231643921092 0.38250632 0 hm5C_site_60038 DeepMRMD:0.38250632;iRNA_m5C:0 60039 chr12 6436653 6436653 1 + C A rs147197027 6436649 + 6436629 6436669 41 GGGACATCCCTCTGCGTCCCCACCCTCCCGACCCCCAAGCT GGGACATCCCTCTGCGTCCCCACCATCCCGACCCCCAAGCT < 41bp 0.324849894680945 0.75777873163246 0.09280461 0.13817525 prediction 0.515557463264919 Functional Gain - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6436649 chr12:6436653 nonsynonymous SNV 0.448 4 25 hm5C_associated_SNPs_106894 0 0 0 0 0 Nucleus 0.500194846210101 0.500231643647415 0 7.35948746279913e-05 hm5C_site_60039 DeepMRMD:0;iRNA_m5C:7.35948746279913e-05 60040 chr8 124989778 124989778 1 + T G OV 124989776 + 124989756 124989796 41 CAGGTGTGGGATGAAGGCAGCATGAATGACGTAGCCCTGGC CAGGTGTGGGATGAAGGCAGCAGGAATGACGTAGCCCTGGC < 41bp 0.422806500055928 0.757775894363528 0.35169044 0.8837682 prediction 0.515551788727056 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:124989776 chr8:124989778 nonsynonymous SNV 0.815 1 23 hm5C_associated_SNPs_106895 0 0 0 0 1 exosome 0.500231641305362 0.500231653257075 0.7675364 2.39034250171244e-08 hm5C_site_60040 DeepMRMD:0.7675364;iRNA_m5C:2.39034250171244e-08 60041 chr3 45637154 45637154 1 + C A UCEC 45637150 + 45637130 45637170 41 CCGCAGCAGCGAGAAGCCAACAGGCCTTTGGTCCACTGCCT CCGCAGCAGCGAGAAGCCAACAGGACTTTGGTCCACTGCCT < 41bp 0.64928226688214 0.907051730220351 0.88605386 0.8927994 prediction 0.515538926676423 Functional Gain - LIMD1 ENSG00000144791 CDS Human protein_coding chr3:45637150 chr3:45637154 synonymous SNV . 0 25 hm5C_associated_SNPs_106896 0 0 1 0 0 Ribosome 0.500231643921037 0.500231643921092 0.0134910800000001 1.0946799022804e-13 hm5C_site_60041 DeepMRMD:0.0134910800000001;iRNA_m5C:1.0946799022804e-13 60042 chrX 49179719 49179719 1 + C G rs6520418 49179718 + 49179698 49179738 41 ATTATTGGCCTAGACCAAGACCCTATGTACAGCCTCCTGAA ATTATTGGCCTAGACCAAGACGCTATGTACAGCCTCCTGAA < 41bp 0.453000072709636 0.757767780294954 0.15779871 0.14298943 prediction 0.515535560589908 Functional Gain - GAGE12J ENSG00000224659 CDS Human protein_coding chrX:49179718 chrX:49179719 nonsynonymous SNV 0.009 0 22 hm5C_associated_SNPs_106897 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60042 DeepMRMD:0;iRNA_m5C:0 60043 chr19 54466532 54466532 1 + T G SARC 54466529 + 54466509 54466549 41 CCATCAGCACTGACTACTGGCTCTACACGCGCGCCCTCATC CCATCAGCACTGACTACTGGCTCGACACGCGCGCCCTCATC < 41bp 0.375007762326108 0.757765992148217 0.9053587 0.18417329 prediction 0.515531984296434 Functional Gain - CACNG8 ENSG00000142408 CDS Human protein_coding chr19:54466529 chr19:54466532 nonsynonymous SNV 0.998 4 24 hm5C_associated_SNPs_106898 0 0 0 0 0 exosome 0.500231643807964 0.500231643922689 0 2.29449792499281e-10 hm5C_site_60043 DeepMRMD:0;iRNA_m5C:2.29449792499281e-10 60044 chr15 67483039 67483039 1 + C G rs111695641 67483038 + 67483018 67483058 41 TCTGAAACACACGAGCAAACCCAGAGGTGGATGTTATGAAC TCTGAAACACACGAGCAAACCGAGAGGTGGATGTTATGAAC < 41bp 0.573817534590709 0.831579972710679 0.4176969 0.4550613 prediction 0.515524876239939 Functional Gain - SMAD3 ENSG00000166949 UTR3 Human protein_coding chr15:67483038 chr15:67483039 . . 0 22 hm5C_associated_SNPs_106899 0 0 1 0 0 Cytosol 0.500231668481759 0.500232968789225 0 2.60061493162489e-06 hm5C_site_60044 DeepMRMD:0;iRNA_m5C:2.60061493162489e-06 60045 chr11 59857211 59857211 1 + T C SARC 59857209 + 59857189 59857229 41 AATATCTCCCCAGGAAGTATCTTCAGGCAGACTATTGAAGT AATATCTCCCCAGGAAGTATCTCCAGGCAGACTATTGAAGT < 41bp 0.550523945228844 0.808285192662314 0.20146707 0.94567776 prediction 0.51552249486694 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59857209 chr11:59857211 nonsynonymous SNV 0.002 0 23 hm5C_associated_SNPs_106900 0 0 0 0 1 exosome 0.500231643921093 0.500232179252666 0.89135552 1.07066314702919e-06 hm5C_site_60045 DeepMRMD:0.89135552;iRNA_m5C:1.07066314702919e-06 60046 chr19 51633303 51633303 1 + C A LIHC 51633299 + 51633279 51633319 41 CTCGCGGGGACAGGAGGCCACTGACACCGAGTACTCGGAGA CTCGCGGGGACAGGAGGCCACTGAAACCGAGTACTCGGAGA < 41bp 0.360931024647174 0.757760565488864 0.49037725 0.86641955 prediction 0.515521130977729 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51633299 chr19:51633303 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106901 0 0 0 0 0 exosome 0.500231504620218 0.500231651687609 0.7328391 2.9413478186413e-07 hm5C_site_60046 DeepMRMD:0.7328391;iRNA_m5C:2.9413478186413e-07 60047 chr5 149357698 149357698 1 + T G UCEC 149357695 + 149357675 149357715 41 TTGGGTACCTCCCGTCACATCTCTGTGGGCATTTTTGGAGT TTGGGTACCTCCCGTCACATCTCGGTGGGCATTTTTGGAGT < 41bp 0.380904394141843 0.757754934825663 0.03937015 0.3770484 prediction 0.515509869651327 Functional Gain - SLC26A2 ENSG00000155850 CDS Human protein_coding chr5:149357695 chr5:149357698 synonymous SNV . 0 24 hm5C_associated_SNPs_106902 0 0 1 0 0 Endoplasmic reticulum 0.50023164399569 0.500257473104548 0 5.16582177156888e-05 hm5C_site_60047 DeepMRMD:0;iRNA_m5C:5.16582177156888e-05 60048 chr6 155153575 155153575 1 + C G LUSC 155153574 + 155153554 155153594 41 ACCCCAACGGGGAATCCCACCCCCATCGGTACTTGATTCAG ACCCCAACGGGGAATCCCACCGCCATCGGTACTTGATTCAG < 41bp 0.448037738460826 0.757754535373333 0.07420364 0.883654 prediction 0.515509070746665 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155153574 chr6:155153575 synonymous SNV . 0 22 hm5C_associated_SNPs_106903 0 0 1 0 0 Nucleus 0.500231643921 0.50023164392109 0.767308 1.8052226380405e-13 hm5C_site_60048 DeepMRMD:0.767308;iRNA_m5C:1.8052226380405e-13 60049 chr6 90604382 90604382 1 + T G UCEC 90604379 + 90604359 90604399 41 CAGCCAGGTTGCAACAATATCTGTTATGATGATGCATTCCC CAGCCAGGTTGCAACAATATCTGGTATGATGATGCATTCCC < 41bp 0.381066505194163 0.757733329544394 0.0765923 0.0958859 prediction 0.515466659088789 Functional Gain - GJA10 ENSG00000135355 CDS Human protein_coding chr6:90604379 chr6:90604382 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_106904 0 0 0 0 0 unknown 0.50023164415091 0.500231394228761 0 0 hm5C_site_60049 DeepMRMD:0;iRNA_m5C:0 60050 chr9 131262415 131262415 1 + C A rs144331164 131262411 + 131262391 131262431 41 CTGGAGCAGTCCGAGAGCACCAACCGCAGCATGCAGAACTA CTGGAGCAGTCCGAGAGCACCAACAGCAGCATGCAGAACTA < 41bp 0.376397519153319 0.757712637789297 0.19062072 0.16269335 prediction 0.515425275578594 Functional Gain - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131262411 chr9:131262415 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_106905 0 0 1 0 1 Cytosol 0.500231643921092 0.500231646708942 0 5.57569967973848e-09 hm5C_site_60050 DeepMRMD:0;iRNA_m5C:5.57569967973848e-09 60051 chr16 25703807 25703807 1 + C G rs559373623 25703806 + 25703786 25703826 41 TCTGGCCGCGCCGCCGCCGCCCGGCGCCTCTGCTAAGGGGC TCTGGCCGCGCCGCCGCCGCCGGGCGCCTCTGCTAAGGGGC < 41bp 0.564816330503395 0.822528119434735 0.8587194 0.92655766 prediction 0.515423577862681 Functional Gain - HS3ST4 ENSG00000182601 CDS Human protein_coding chr16:25703806 chr16:25703807 synonymous SNV . 0 22 hm5C_associated_SNPs_106906 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.13567652 0 hm5C_site_60051 DeepMRMD:0.13567652;iRNA_m5C:0 60052 chr19 38573187 38573187 1 + C G rs572885640 38573186 + 38573166 38573206 41 GCCGACGAGGGCCGGAGCCCCCCGGAAGCCAGCAGGCCGTG GCCGACGAGGGCCGGAGCCCCGCGGAAGCCAGCAGGCCGTG < 41bp 0.459521347807364 0.757708592816783 0.76215696 0.9017775 prediction 0.515417185633566 Functional Gain - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38573186 chr19:38573187 nonsynonymous SNV 0.879 1 22 hm5C_associated_SNPs_106907 0 0 1 0 0 Ribosome 0.500234681877605 0.500231644268347 0.27924108 0 hm5C_site_60052 DeepMRMD:0.27924108;iRNA_m5C:0 60053 chr17 48695601 48695601 1 + C A LUSC 48695597 + 48695577 48695617 41 CCCCAGAGTGTGACGAGACACACCCCTGTGAGGGCCTGGGC CCCCAGAGTGTGACGAGACACACCACTGTGAGGGCCTGGGC < 41bp 0.397676287926626 0.75770578222578 0.0051650405 0.024942249 prediction 0.51541156445156 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48695597 chr17:48695601 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_106908 0 0 0 0 0 exosome 0.500231644297895 0.500231616274792 0 0 hm5C_site_60053 DeepMRMD:0;iRNA_m5C:0 60054 chr12 124799642 124799642 1 + C A rs4765540 124799638 + 124799618 124799658 41 GAGCTGTGGCTGAGCCACCTCTGGCGGATGTTGAGCCAGGA GAGCTGTGGCTGAGCCACCTCTGGAGGATGTTGAGCCAGGA < 41bp 0.642660355526476 0.900362740308446 0.30578306 0.52373046 prediction 0.515404769563939 Functional Gain - RFLNA ENSG00000178882 UTR3 Human protein_coding chr12:124799638 chr12:124799642 . . 0 25 hm5C_associated_SNPs_106909 0 1 0 1 0 unknown 0.500231643942076 0.500231644539023 0.04746092 1.19389453878682e-09 hm5C_site_60054 DeepMRMD:0.04746092;iRNA_m5C:1.19389453878682e-09 60055 chr1 27720353 27720353 1 + C A rs11586015 27720349 + 27720329 27720369 41 GGCCTGGCTCTCAGCTGGCTCAGGCAACGTGAATGTAAGCA GGCCTGGCTCTCAGCTGGCTCAGGAAACGTGAATGTAAGCA < 41bp 0.648836057646593 0.906526684760397 0.6204571 0.8535758 prediction 0.515381254227607 Functional Gain - GPR3 ENSG00000181773 CDS Human protein_coding chr1:27720349 chr1:27720353 synonymous SNV . 0 25 hm5C_associated_SNPs_106910 0 0 0 0 1 nucleoplasm 0.500231643921092 0.500231643920748 0.4662374 0 hm5C_site_60055 DeepMRMD:0.4662374;iRNA_m5C:0 60056 chrX 79699998 79699998 1 + T A rs73223491 79699994 + 79699974 79700014 41 TTAAAACGAATGAAAATGACCAGCTCTGAATGTGAAAGCTT TTAAAACGAATGAAAATGACCAGCACTGAATGTGAAAGCTT < 41bp 0.473244042205842 0.75767997828998 0.24836984 0.10204619 prediction 0.515359956579961 Functional Gain - FAM46D ENSG00000174016 UTR3 Human protein_coding chrX:79699994 chrX:79699998 . . 0 25 hm5C_associated_SNPs_106911 0 0 0 6 0 unknown 0.50023165665579 0.500231680853435 0 4.83952899976714e-08 hm5C_site_60056 DeepMRMD:0;iRNA_m5C:4.83952899976714e-08 60057 chr12 662779 662779 1 + C G rs145300432 662778 + 662758 662798 41 AGGAAGACTCAGTGGCTGAACCAGGTGGAGTCGTACATCGC AGGAAGACTCAGTGGCTGAACGAGGTGGAGTCGTACATCGC < 41bp 0.445937750737929 0.757679196627025 0.9135088 0.92252034 prediction 0.51535839325405 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:662778 chr12:662779 nonsynonymous SNV 0.962 1 22 hm5C_associated_SNPs_106912 0 0 0 0 0 exosome 0.500236372218614 0.500232890930355 0.0180230800000001 0 hm5C_site_60057 DeepMRMD:0.0180230800000001;iRNA_m5C:0 60058 chr6 46802344 46802344 1 + C A LUAD 46802340 + 46802320 46802360 41 AATGACACTGTCATCTGGGACAGGCCGTCCAGGGTGGGAAC AATGACACTGTCATCTGGGACAGGACGTCCAGGGTGGGAAC < 41bp 0.357082200784491 0.757676727385504 0.097611785 0.21450797 prediction 0.515353454771007 Functional Gain - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46802340 chr6:46802344 nonsynonymous SNV 0.959 4 25 hm5C_associated_SNPs_106913 0 0 0 0 1 cytosol 0.50023164354437 0.500231643977389 0 8.66036131697001e-10 hm5C_site_60058 DeepMRMD:0;iRNA_m5C:8.66036131697001e-10 60059 chr1 46743900 46743900 1 + C A rs1048771 46743896 + 46743876 46743916 41 TGCCTGGGATGCTGCCTCCACTGCCATCACCTTCGTCTTCC TGCCTGGGATGCTGCCTCCACTGCAATCACCTTCGTCTTCC < 41bp 0.665684498661477 0.923359093274357 0.068822384 0.29249507 prediction 0.51534918922576 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46743896 chr1:46743900 synonymous SNV . 0 25 hm5C_associated_SNPs_106914 0 0 1 0 0 Ribosome 0.500231696256452 0.500231643157538 0 0 hm5C_site_60059 DeepMRMD:0;iRNA_m5C:0 60060 chr5 140553822 140553822 1 + C A rs202165393 140553818 + 140553798 140553838 41 GTGAGAACAACAGCCCCGCCCTGCCCATCGGCAGTGTCAGC GTGAGAACAACAGCCCCGCCCTGCACATCGGCAGTGTCAGC < 41bp 0.344324089233983 0.757674527476432 0.083808094 0.07609469 prediction 0.515349054952865 Functional Gain - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140553818 chr5:140553822 nonsynonymous SNV 0.992 0 25 hm5C_associated_SNPs_106915 0 0 0 0 0 exosome 0.500231377113804 0.500231643097053 0 5.31966497963055e-07 hm5C_site_60060 DeepMRMD:0;iRNA_m5C:5.31966497963055e-07 60061 chrX 47098764 47098764 1 + C G SKCM 47098760 + 47098740 47098780 41 CGCCCCACAGATGAGATAAACTGGCGCCTCAAGGAGGGACT CGCCCCACAGATGAGATAAACTGGGGCCTCAAGGAGGGACT < 41bp 0.56426281628002 0.821930418943902 0.90860736 0.93054986 prediction 0.515335205327764 Functional Gain - USP11 ENSG00000102226 CDS Human protein_coding chrX:47098760 chrX:47098764 nonsynonymous SNV 0.923 0 25 hm5C_associated_SNPs_106916 0 0 1 0 1 cytosol 0.500231646970336 0.500231643921092 0.043885 0 hm5C_site_60061 DeepMRMD:0.043885;iRNA_m5C:0 60062 chr17 18110256 18110256 1 + C T CESC 18110255 + 18110235 18110275 41 CTGAAACCCAAGCGGTCCCACCGCAAGGCAGACCCTGATGC CTGAAACCCAAGCGGTCCCACTGCAAGGCAGACCCTGATGC < 41bp 0.518619208248045 0.776282196892847 0.0645636 0.082157284 prediction 0.515325977289605 Functional Gain - ALKBH5 ENSG00000091542 CDS Human protein_coding chr17:18110255 chr17:18110256 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_106917 0 0 1 1 1 Cytosol 0.500231565790676 0.500231643448411 0 1.5531547137293e-07 hm5C_site_60062 DeepMRMD:0;iRNA_m5C:1.5531547137293e-07 60063 chr17 39261990 39261990 1 + C A LUAD 39261986 + 39261966 39262006 41 GCTGTGAGACGACCTGCTGCCACCCTAGGTGCTGCATCTCC GCTGTGAGACGACCTGCTGCCACCATAGGTGCTGCATCTCC < 41bp 0.654718552979745 0.912369104926554 0.2527188 0.6308146 prediction 0.515301103893618 Functional Gain - KRTAP4-9 ENSG00000212722 CDS Human protein_coding chr17:39261986 chr17:39261990 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_106918 0 0 0 0 0 unknown 0.50023164249624 0.500231622839635 0.2616292 0 hm5C_site_60063 DeepMRMD:0.2616292;iRNA_m5C:0 60064 chr1 158325653 158325653 1 + C G BRCA 158325652 + 158325632 158325672 41 GGCTGTCCTGTGGCCCCAGTCCTGGCCCTGGCCGTCTGCAG GGCTGTCCTGTGGCCCCAGTCGTGGCCCTGGCCGTCTGCAG < 41bp 0.55018539664833 0.807835693142338 0.69551426 0.9117236 prediction 0.515300592988017 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325652 chr1:158325653 nonsynonymous SNV 0.001 2 22 hm5C_associated_SNPs_106919 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.43241868 0 hm5C_site_60064 DeepMRMD:0.43241868;iRNA_m5C:0 60065 chr7 37780524 37780524 1 + T A BLCA 37780520 + 37780500 37780540 41 TTTCACAAAGAGCTTGCTTACACATATGTGAAAATCATCAA TTTCACAAAGAGCTTGCTTACACAAATGTGAAAATCATCAA < 41bp 0.458060168510067 0.757647636684317 0.09226075 0.12083799 prediction 0.515295273368635 Functional Gain - GPR141 ENSG00000187037 CDS Human protein_coding chr7:37780520 chr7:37780524 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_106920 0 0 0 0 0 exosome 0.500231644156833 0.500231643173925 0 0 hm5C_site_60065 DeepMRMD:0;iRNA_m5C:0 60066 chr1 3677983 3677983 1 + C G rs143408613 3677982 + 3677962 3678002 41 GGCCAAGAGACATCCATGTCCCCAGGCAGGAGGGTGAGCCA GGCCAAGAGACATCCATGTCCGCAGGCAGGAGGGTGAGCCA < 41bp 0.456021290412808 0.757646493758985 0.27843004 0.42548385 prediction 0.51529298751797 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3677982 chr1:3677983 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_106921 0 0 0 0 0 exosome 0.500231675938454 0.500231644121487 0 0 hm5C_site_60066 DeepMRMD:0;iRNA_m5C:0 60067 chr5 12575102 12575102 1 + C G rs377430425 12575101 + 12575081 12575121 41 GAGCCCAGGCAGAGGAGGCGCCGAGAGCGAGCGAGGGCTGC GAGCCCAGGCAGAGGAGGCGCGGAGAGCGAGCGAGGGCTGC < 41bp 0.473013446971104 0.757638211561572 0.27997643 0.5887407 prediction 0.515276423123143 Functional Gain - LINC01194 ENSG00000248131 ncRNA_exonic Human lincRNA chr5:12575101 chr5:12575102 . . 0 22 hm5C_associated_SNPs_106922 0 0 0 0 1 unknown 0.500231643920309 0.500231643921086 0.1774814 1.55475632368507e-12 hm5C_site_60067 DeepMRMD:0.1774814;iRNA_m5C:1.55475632368507e-12 60068 chr1 153946515 153946515 1 + T A rs142604008 153946511 + 153946491 153946531 41 CCAAGACCCAGTGGGCGCATCCGGTCCGTGCTGCATGCAGA CCAAGACCCAGTGGGCGCATCCGGACCGTGCTGCATGCAGA < 41bp 0.458435447216409 0.757637095092866 0.36774665 0.7165722 prediction 0.515274190185732 Functional Gain - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153946511 chr1:153946515 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106923 0 0 0 0 0 exosome 0.500231633669207 0.500231182615341 0.4331444 0 hm5C_site_60068 DeepMRMD:0.4331444;iRNA_m5C:0 60069 chr16 68087509 68087509 1 + T A BRCA 68087505 + 68087485 68087525 41 ACTTTGTCGCCCCTGATGATCGAGTTGTCTTCCGCACCTGT ACTTTGTCGCCCCTGATGATCGAGATGTCTTCCGCACCTGT < 41bp 0.608248628709252 0.865882404495058 0.90145147 0.93241894 prediction 0.515267551571612 Functional Gain - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68087505 chr16:68087509 nonsynonymous SNV 0.930 4 25 hm5C_associated_SNPs_106924 0 0 1 0 2 Ribosome 0.500231643921093 0.500231643921093 0.06193494 0 hm5C_site_60069 DeepMRMD:0.06193494;iRNA_m5C:0 60070 chr9 84606437 84606437 1 + T A LUSC 84606433 + 84606413 84606453 41 TCAAAGGCATTGACCATTCACACCTTGCATCTTCAGAATTC TCAAAGGCATTGACCATTCACACCATGCATCTTCAGAATTC < 41bp 0.437188377829021 0.757625035814047 0.009711415 0.010285765 prediction 0.515250071628094 Functional Gain - SPATA31D1 ENSG00000214929 CDS Human protein_coding chr9:84606433 chr9:84606437 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_106925 0 0 0 0 0 exosome 0.500232773166409 0.500236254496031 0 6.96265924315931e-06 hm5C_site_60070 DeepMRMD:0;iRNA_m5C:6.96265924315931e-06 60071 chr21 43562530 43562530 1 + C G rs552803082 43562526 + 43562506 43562546 41 CACCACCCGCGCGGCCCCCGCAGCCTAGACCTCCCAGGCCT CACCACCCGCGCGGCCCCCGCAGCGTAGACCTCCCAGGCCT < 41bp 0.54916060843283 0.806784399353005 0.22133318 0.45489 prediction 0.515247581840351 Functional Gain - UMODL1 ENSG00000177398 UTR3 Human protein_coding chr21:43562526 chr21:43562530 . . 0 25 hm5C_associated_SNPs_106926 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60071 DeepMRMD:0;iRNA_m5C:0 60072 chr17 7983166 7983166 1 + A T PRAD 7983170 - 7983150 7983190 41 GCCTGATCCGCCGCTGCACGCGGATCCCAGACAAGTTCCCC GCCTGATCCGCCGCTGCACGCGGAACCCAGACAAGTTCCCC < 41bp 0.597086023310246 0.854706107912155 0.23154402 0.36235026 prediction 0.515240169203817 Functional Gain - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7983170 chr17:7983166 nonsynonymous SNV 0.957 2 25 hm5C_associated_SNPs_106927 0 0 0 0 1 exosome 0.500231806198962 0.500231643920735 0 0 hm5C_site_60072 DeepMRMD:0;iRNA_m5C:0 60073 chr1 186276846 186276846 1 + T A SKCM 186276842 + 186276822 186276862 41 ACCCACCACCCCTGAGGAGCCTGCTCCCACCACTCCCAAGG ACCCACCACCCCTGAGGAGCCTGCACCCACCACTCCCAAGG < 41bp 0.592467652070156 0.850083723407726 0.06173259 0.076619804 prediction 0.515232142675139 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186276842 chr1:186276846 synonymous SNV . 0 25 hm5C_associated_SNPs_106928 0 0 0 0 0 nucleoplasm 0.500231643921049 0.500231643915194 0 0 hm5C_site_60073 DeepMRMD:0;iRNA_m5C:0 60074 chr8 10383089 10383089 1 + C G rs199930823 10383088 + 10383068 10383108 41 CCCCGGGCCCACAGCACAGCCCAGGGCCATGCTCCTGTTCT CCCCGGGCCCACAGCACAGCCGAGGGCCATGCTCCTGTTCT < 41bp 0.573431809372249 0.83103510827538 0.74070686 0.9096289 prediction 0.515206597806263 Functional Gain - PRSS55 ENSG00000253649 ncRNA_intronic Human protein_coding chr8:10383088 chr8:10383089 . . 0 22 hm5C_associated_SNPs_106929 0 0 0 0 0 exosome 0.500231648250767 0.500231643831266 0.33784408 0 hm5C_site_60074 DeepMRMD:0.33784408;iRNA_m5C:0 60075 chr20 61467564 61467564 1 + C G rs142066316 61467563 + 61467543 61467583 41 GCAGTCGAGGGGAGCTGGGCCCCAAAGGCACCCAGGGTCCC GCAGTCGAGGGGAGCTGGGCCGCAAAGGCACCCAGGGTCCC < 41bp 0.449918335601741 0.757594283656117 0.13736469 0.3616957 prediction 0.515188567312235 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61467563 chr20:61467564 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_106930 2 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_60075 DeepMRMD:0;iRNA_m5C:0 not specified not specified 60076 chr11 93530729 93530729 1 + T C STAD 93530727 + 93530707 93530747 41 AAACAGACCTTGAGTTCCATCATGATGCCTCATCCAGCAAG AAACAGACCTTGAGTTCCATCACGATGCCTCATCCAGCAAG < 41bp 0.55982529096971 0.817414469294052 0.11340773 0.096176416 prediction 0.515178356648683 Functional Gain - MED17 ENSG00000042429 CDS Human protein_coding chr11:93530727 chr11:93530729 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_106931 0 0 1 0 1 Cytosol 0.50023164394798 0.500231644207103 0 5.1824611269069e-10 hm5C_site_60076 DeepMRMD:0;iRNA_m5C:5.1824611269069e-10 60077 chr16 31426257 31426257 1 + C T LUSC 31426256 + 31426236 31426276 41 TGAGAGAGCCCATCCCCTCCCCCCAGAACCTGCGTCCTGTG TGAGAGAGCCCATCCCCTCCCTCCAGAACCTGCGTCCTGTG < 41bp 0.488655464659777 0.757583267378139 0.10023439 0.93562466 prediction 0.515166534756277 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31426256 chr16:31426257 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_106932 0 0 0 0 2 nucleolus 0.500231643922089 0.500231930675062 0.87124932 5.73505946066533e-07 hm5C_site_60077 DeepMRMD:0.87124932;iRNA_m5C:5.73505946066533e-07 60078 chr19 1227946 1227946 1 + C G rs554638416 1227942 + 1227922 1227962 41 GCCGTCCGGCGGCCCCGCCGCAGACCAGCTGGCGGGTGTGG GCCGTCCGGCGGCCCCGCCGCAGAGCAGCTGGCGGGTGTGG < 41bp 0.533873446851933 0.791451691642552 0.44038266 0.7768157 prediction 0.515156489581237 Functional Gain - STK11 ENSG00000118046 UTR3 Human protein_coding chr19:1227942 chr19:1227946 . . 0 25 hm5C_associated_SNPs_106933 0 0 1 0 0 Ribosome 0.500231643991729 0.500231643920947 0.5536314 0 hm5C_site_60078 DeepMRMD:0.5536314;iRNA_m5C:0 60079 chr3 20161148 20161148 1 + T G BLCA 20161146 + 20161126 20161166 41 ACAATTCAACCTCATCTTCCCTTGAGCAGCCAAACGCAGGG ACAATTCAACCTCATCTTCCCTGGAGCAGCCAAACGCAGGG < 41bp 0.622332220057154 0.879904751094425 0.06173134 0.18095133 prediction 0.515145062074542 Functional Gain - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20161146 chr3:20161148 synonymous SNV . 0 23 hm5C_associated_SNPs_106934 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921075 0 0 hm5C_site_60079 DeepMRMD:0;iRNA_m5C:0 60080 chr1 41012330 41012330 1 + C A UCEC 41012326 + 41012306 41012346 41 TGCTCACATTCAATAAAATTCTGACTATGGAGAGAATCCAC TGCTCACATTCAATAAAATTCTGAATATGGAGAGAATCCAC < 41bp 0.370531108256349 0.757566337277798 0.099822134 0.108635515 prediction 0.515132674555596 Functional Gain - ZNF684 ENSG00000117010 CDS Human protein_coding chr1:41012326 chr1:41012330 nonsynonymous SNV 0.221 0 25 hm5C_associated_SNPs_106935 0 0 1 0 1 nucleoplasm 0.500233202488843 0.500231643922353 0 0 hm5C_site_60080 DeepMRMD:0;iRNA_m5C:0 60081 chr1 1222503 1222503 1 + C A rs143433846 1222499 + 1222479 1222519 41 CCTCTCCCAGTGCAACAGCACGGGCGGCGACTGCTTTTACC CCTCTCCCAGTGCAACAGCACGGGAGGCGACTGCTTTTACC < 41bp 0.650540696384191 0.90810631495601 0.7717056 0.8696209 prediction 0.515131237143637 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222499 chr1:1222503 synonymous SNV . 0 25 hm5C_associated_SNPs_106936 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.1958306 0 hm5C_site_60081 DeepMRMD:0.1958306;iRNA_m5C:0 60082 chr19 56539652 56539652 1 + C G LUSC 56539648 + 56539628 56539668 41 AATGCCACCACCCCAGGAGACACCCTGGACGCCTTCCACTG AATGCCACCACCCCAGGAGACACCGTGGACGCCTTCCACTG < 41bp 0.458814114510413 0.757532696448979 0.018811405 0.08059764 prediction 0.515065392897958 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56539648 chr19:56539652 nonsynonymous SNV 0.012 3 25 hm5C_associated_SNPs_106937 0 0 0 0 0 unknown 0.500231643921092 0.500231643921581 0 9.77662395484913e-13 hm5C_site_60082 DeepMRMD:0;iRNA_m5C:9.77662395484913e-13 60083 chr12 4796133 4796133 1 + C A rs549509637 4796129 + 4796109 4796149 41 CATCACAGACATGAAATTGCCTCACCTGCCTGGCTTAGAAG CATCACAGACATGAAATTGCCTCAACTGCCTGGCTTAGAAG < 41bp 0.341252041367813 0.757521953876128 0.03903207 0.068908304 prediction 0.515043907752255 Functional Gain - NDUFA9 ENSG00000139180 CDS Human protein_coding chr12:4796129 chr12:4796133 nonsynonymous SNV 0.248 0 25 hm5C_associated_SNPs_106938 0 0 1 0 1 Ribosome 0.500231643931245 0.500234629991352 0 5.9721202152474e-06 hm5C_site_60083 DeepMRMD:0;iRNA_m5C:5.9721202152474e-06 60084 chr19 35758359 35758359 1 + T G BRCA 35758356 + 35758336 35758376 41 ACGACTCGAGGGACTTCCCACGCTCCCGGGACCCCCACTAC ACGACTCGAGGGACTTCCCACGCGCCCGGGACCCCCACTAC < 41bp 0.358827644957191 0.757507834140726 0.045986235 0.19476056 prediction 0.515015668281452 Functional Gain - LSR ENSG00000105699 CDS Human protein_coding chr19:35758356 chr19:35758359 nonsynonymous SNV 0.105 0 24 hm5C_associated_SNPs_106939 0 0 1 0 0 chromatin 0.500231645327812 0.500231643916466 0 0 hm5C_site_60084 DeepMRMD:0;iRNA_m5C:0 60085 chr8 125988733 125988733 1 + T G LUAD 125988731 + 125988711 125988751 41 TGCAAAAGAAATGCCACTGACATGGGTTCAAGATGAGATTT TGCAAAAGAAATGCCACTGACAGGGGTTCAAGATGAGATTT < 41bp 0.608915997895307 0.866423656355931 0.37209445 0.9188037 prediction 0.515015316921249 Functional Gain - ZNF572 ENSG00000180938 CDS Human protein_coding chr8:125988731 chr8:125988733 nonsynonymous SNV 0.040 0 23 hm5C_associated_SNPs_106940 0 0 0 0 0 exosome 0.500231669125782 0.500231643914992 0.8376074 0 hm5C_site_60085 DeepMRMD:0.8376074;iRNA_m5C:0 60086 chr3 97851703 97851703 1 + C A rs531502923 97851699 + 97851679 97851719 41 TGCTGTCATCTGGAAAGACCCTCACCTTCATATCCCAATGT TGCTGTCATCTGGAAAGACCCTCAACTTCATATCCCAATGT < 41bp 0.365596747539981 0.757507152525775 0.04150346 0.05511433 prediction 0.515014305051549 Functional Gain - OR5H1 ENSG00000231192 CDS Human protein_coding chr3:97851699 chr3:97851703 nonsynonymous SNV 0.218 0 25 hm5C_associated_SNPs_106941 0 0 0 0 0 unknown 0.50023164394914 0.500231643811863 0 0 hm5C_site_60086 DeepMRMD:0;iRNA_m5C:0 60087 chr9 140507480 140507480 1 + C G rs62622789 140507479 + 140507459 140507499 41 GTAAGTTTGGGAGCCAGTTCCCGAGTGGTGACCCCTGGGGG GTAAGTTTGGGAGCCAGTTCCGGAGTGGTGACCCCTGGGGG < 41bp 0.446110594070637 0.757505692337066 0.80389327 0.9358298 prediction 0.515011384674131 Functional Gain - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140507479 chr9:140507480 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_106942 0 0 1 0 1 Ribosome 0.500231643921138 0.500231643921094 0.26387306 0 hm5C_site_60087 DeepMRMD:0.26387306;iRNA_m5C:0 60088 chr9 95738957 95738957 1 + C T SKCM 95738956 + 95738936 95738976 41 AACCTGACTCTGAGAACACCCCCCAGAAGGCTGACAAGGAT AACCTGACTCTGAGAACACCCTCCAGAAGGCTGACAAGGAT < 41bp 0.492574882484992 0.757502335255693 0.07785964 0.94691926 prediction 0.515004670511386 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95738956 chr9:95738957 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_106943 0 0 0 0 1 exosome 0.500231643921092 0.500231643606302 0.89383852 0 hm5C_site_60088 DeepMRMD:0.89383852;iRNA_m5C:0 60089 chr3 107097172 107097172 1 + T G UCEC 107097169 + 107097149 107097189 41 ATTTACATTTACCCAGACTTCAGTACATGGATCAAGCTAAC ATTTACATTTACCCAGACTTCAGGACATGGATCAAGCTAAC < 41bp 0.635609981350465 0.893097890406852 0.09380263 0.14915404 prediction 0.514975818112774 Functional Gain - CCDC54 ENSG00000138483 CDS Human protein_coding chr3:107097169 chr3:107097172 nonsynonymous SNV 0.981 0 24 hm5C_associated_SNPs_106944 0 0 0 0 0 unknown 0.500231493444969 0.500231643920281 0 3.00950623310925e-07 hm5C_site_60089 DeepMRMD:0;iRNA_m5C:3.00950623310925e-07 60090 chr1 248344149 248344149 1 + C G HNSC 248344148 + 248344128 248344168 41 CTCACTCCCATGCTGAATCCCCTCATCTACAGCCTCCGCAA CTCACTCCCATGCTGAATCCCGTCATCTACAGCCTCCGCAA < 41bp 0.457880265707831 0.757485390632458 0.014689565 0.017576545 prediction 0.514970781264916 Functional Gain - OR2M2 ENSG00000198601 CDS Human protein_coding chr1:248344148 chr1:248344149 nonsynonymous SNV 0.013 3 22 hm5C_associated_SNPs_106945 0 0 0 0 0 exosome 0.500231643942184 0.500231656155715 0 2.44270617066888e-08 hm5C_site_60090 DeepMRMD:0;iRNA_m5C:2.44270617066888e-08 60091 chr11 123777207 123777207 1 + T G COAD 123777205 + 123777185 123777225 41 GATTAACTGAACAAGCAGAGCTTCAGCTGCCCCTCTTCTGC GATTAACTGAACAAGCAGAGCTGCAGCTGCCCCTCTTCTGC < 41bp 0.595465587338855 0.852949442128552 0.06540084 0.18959749 prediction 0.514967709579393 Functional Gain - OR8D4 ENSG00000181518 CDS Human protein_coding chr11:123777205 chr11:123777207 synonymous SNV . 0 23 hm5C_associated_SNPs_106946 0 0 0 0 0 unknown 0.500231643921092 0.500231643921076 0 0 hm5C_site_60091 DeepMRMD:0;iRNA_m5C:0 60092 chr19 56171939 56171939 1 + C T SKCM 56171938 + 56171918 56171958 41 TAAATACTGGGACGTGCCACCCCCAGGCTTTGAGCACATCA TAAATACTGGGACGTGCCACCTCCAGGCTTTGAGCACATCA < 41bp 0.526421136942516 0.783902529420775 0.009691089 0.927778 prediction 0.514962784956518 Functional Gain - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56171938 chr19:56171939 synonymous SNV . 0 22 hm5C_associated_SNPs_106947 0 0 1 0 2 Ribosome 0.500231644020772 0.50023173716314 0.855556 1.862847371914e-07 hm5C_site_60092 DeepMRMD:0.855556;iRNA_m5C:1.862847371914e-07 60093 chr9 130152978 130152978 1 + C T SKCM 130152977 + 130152957 130152997 41 GCCAAAGGCCAAATCAAAACCCCGGAAGCGGTTAGAAGAAA GCCAAAGGCCAAATCAAAACCTCGGAAGCGGTTAGAAGAAA < 41bp 0.496354897152797 0.757476745213676 0.2774071 0.25299862 prediction 0.514953490427352 Functional Gain - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130152977 chr9:130152978 synonymous SNV . 0 22 hm5C_associated_SNPs_106948 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_60093 DeepMRMD:0;iRNA_m5C:0 60094 chr6 348192 348192 1 + T G COAD 348189 + 348169 348209 41 CTGGGAGGATGCCCTGCACACCGTGCGTGCTGGGAGATCCT CTGGGAGGATGCCCTGCACACCGGGCGTGCTGGGAGATCCT < 41bp 0.352442481303963 0.757475471117808 0.08071214 0.47721046 prediction 0.514950942235616 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348189 chr6:348192 nonsynonymous SNV 0.806 5 24 hm5C_associated_SNPs_106949 0 0 1 0 2 Ribosome 0.500231644205119 0.500231643921107 0 0 hm5C_site_60094 DeepMRMD:0;iRNA_m5C:0 60095 chr3 128627091 128627091 1 + C T UCEC 128627090 + 128627070 128627110 41 CTGCAGCATGCCGGCCGCATCCTGACTACCAGGATCCAGTA CTGCAGCATGCCGGCCGCATCTTGACTACCAGGATCCAGTA < 41bp 0.507397974019958 0.764866686177127 0.061311096 0.11852285 prediction 0.514937424314339 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128627090 chr3:128627091 synonymous SNV . 0 22 hm5C_associated_SNPs_106950 0 0 1 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_60095 DeepMRMD:0;iRNA_m5C:0 60096 chr1 32050548 32050548 1 + C G SKCM 32050544 + 32050524 32050564 41 ACACATGACGCCTGTCCTGTCGCCCCAGAACCTGCTGTCTT ACACATGACGCCTGTCCTGTCGCCGCAGAACCTGCTGTCTT < 41bp 0.550440568080238 0.807889069170009 0.10016295 0.30372527 prediction 0.514897002179542 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32050544 chr1:32050548 synonymous SNV . 0 25 hm5C_associated_SNPs_106951 0 0 0 0 1 Ribosome 0.500230160460247 0.500221629225384 0 0 hm5C_site_60096 DeepMRMD:0;iRNA_m5C:0 60097 chr19 35523483 35523483 1 + T C BLCA 35523481 + 35523461 35523501 41 GTGGACTCGGAGACCGAGGCCGTGTATGGGATGACCTTCAA GTGGACTCGGAGACCGAGGCCGCGTATGGGATGACCTTCAA < 41bp 0.489923802189237 0.75744713308429 0.21911862 0.3237982 prediction 0.51489426616858 Functional Gain - SCN1B ENSG00000105711 CDS Human protein_coding chr19:35523481 chr19:35523483 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_106952 0 0 0 0 0 exosome 0.500231644536433 0.500231742693989 0 1.96315112610534e-07 hm5C_site_60097 DeepMRMD:0;iRNA_m5C:1.96315112610534e-07 60098 chr17 40716744 40716744 1 + C T LUSC 40716743 + 40716723 40716763 41 CCAGGAAAGGCCAGAGCTCCCCACATGTCTCTATGTAATTG CCAGGAAAGGCCAGAGCTCCCTACATGTCTCTATGTAATTG < 41bp 0.508284819738866 0.765730000469785 0.107346326 0.8311376 prediction 0.514890361461838 Functional Gain - COASY ENSG00000068120 CDS Human protein_coding chr17:40716743 chr17:40716744 synonymous SNV . 0 22 hm5C_associated_SNPs_106953 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.6622752 0 hm5C_site_60098 DeepMRMD:0.6622752;iRNA_m5C:0 60099 chr3 49012254 49012254 1 + C T SKCM 49012253 + 49012233 49012273 41 CCCTTCTGTCTCCTCAGTGTCCCAAGTGCAACATCTGCATT CCCTTCTGTCTCCTCAGTGTCTCAAGTGCAACATCTGCATT < 41bp 0.509155863370911 0.766599435553789 0.057480454 0.15754911 prediction 0.514887144365755 Functional Gain - ARIH2 ENSG00000177479 CDS Human protein_coding chr3:49012253 chr3:49012254 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_106954 0 0 1 0 1 Cytosol 0.500231643921014 0.500231643730462 0 0 hm5C_site_60099 DeepMRMD:0;iRNA_m5C:0 60100 chr3 148614363 148614363 1 + T A HNSC 148614359 + 148614339 148614379 41 TATGACCTGGGCATCAAACACACATTTGCCTTTGAGCTCCG TATGACCTGGGCATCAAACACACAATTGCCTTTGAGCTCCG < 41bp 0.604672483677709 0.862101970483791 0.109731466 0.14562303 prediction 0.514858973612163 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148614359 chr3:148614363 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106955 0 0 0 0 1 Endoplasmic reticulum 0.500231646886538 0.500231723543148 0 1.53313220563334e-07 hm5C_site_60100 DeepMRMD:0;iRNA_m5C:1.53313220563334e-07 60101 chr17 16203218 16203218 1 + C A UCEC 16203217 + 16203197 16203237 41 TGTAGGGATTTCCCAGATGACCCAGGCATGCAGTGGGACAC TGTAGGGATTTCCCAGATGACACAGGCATGCAGTGGGACAC < 41bp 0.494165267610052 0.757425499827709 0.27549464 0.36669844 prediction 0.514850999655418 Functional Gain - PIGL ENSG00000108474 CDS Human protein_coding chr17:16203217 chr17:16203218 nonsynonymous SNV 0.719 3 22 hm5C_associated_SNPs_106956 0 0 1 0 2 chromatin 0.500231643921079 0.500231643921048 0 0 hm5C_site_60101 DeepMRMD:0;iRNA_m5C:0 60102 chr1 84945027 84945027 1 + T G rs187004394 84945024 + 84945004 84945044 41 AAAAGTCTAAAACGGAAAGCCGCTGCCGAAGAACTTCAGGA AAAAGTCTAAAACGGAAAGCCGCGGCCGAAGAACTTCAGGA < 41bp 0.646644265175221 0.904063169602741 0.18651724 0.3441668 prediction 0.514837808855039 Functional Gain - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84945024 chr1:84945027 synonymous SNV . 0 24 hm5C_associated_SNPs_106957 0 0 1 0 0 Ribosome 0.500231648044561 0.500231643921059 0 0 hm5C_site_60102 DeepMRMD:0;iRNA_m5C:0 60103 chr9 38396719 38396719 1 + C A rs117820646 38396715 + 38396695 38396735 41 AGTGCTGCTGTGCTGGCTCCCGGACCTTCGTGGAAGAATCC AGTGCTGCTGTGCTGGCTCCCGGAACTTCGTGGAAGAATCC < 41bp 0.350878094141249 0.75740545272732 0.84265214 0.83349156 prediction 0.514810905454639 Functional Gain - ALDH1B1 ENSG00000137124 CDS Human protein_coding chr9:38396715 chr9:38396719 nonsynonymous SNV 0.605 3 25 hm5C_associated_SNPs_106958 0 0 1 0 0 Cytosol 0.500231643921121 0.500231643921092 0 0 hm5C_site_60103 DeepMRMD:0;iRNA_m5C:0 60104 chr3 38182689 38182689 1 + T C UCS 38182687 + 38182667 38182707 41 AAGAAAGAGTTCCCCAGCATCCTGAGGTTCATCACTGTCTG AAGAAAGAGTTCCCCAGCATCCCGAGGTTCATCACTGTCTG < 41bp 0.520063430282102 0.777460601449771 0.18272343 0.3120107 prediction 0.514794342335338 Functional Gain - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38182687 chr3:38182689 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_106959 0 0 1 0 1 Ribosome 0.500231608648253 0.500231645930904 0 7.45653023770387e-08 hm5C_site_60104 DeepMRMD:0;iRNA_m5C:7.45653023770387e-08 60105 chr8 99440915 99440915 1 + C A UCEC 99440914 + 99440894 99440934 41 CGTGGAGCACTTTGGCATTGCCTGGTTCACATTTGAGCTGG CGTGGAGCACTTTGGCATTGCATGGTTCACATTTGAGCTGG < 41bp 0.503916431201312 0.761311379566162 0.47311893 0.48847082 prediction 0.514789896729701 Functional Gain - KCNS2 ENSG00000156486 CDS Human protein_coding chr8:99440914 chr8:99440915 synonymous SNV . 0 22 hm5C_associated_SNPs_106960 0 0 0 0 0 exosome 0.500231643974847 0.500231715284872 0 1.42620049992104e-07 hm5C_site_60105 DeepMRMD:0;iRNA_m5C:1.42620049992104e-07 60106 chr4 30724748 30724748 1 + C G rs35709073 30724747 + 30724727 30724767 41 CGCAGACAGCGGTAAGAACGCCGAGATCGCCTACTCGCTGG CGCAGACAGCGGTAAGAACGCGGAGATCGCCTACTCGCTGG < 41bp 0.460373667746557 0.757394665330521 0.6987897 0.8379087 prediction 0.514789330661042 Functional Gain - PCDH7 ENSG00000169851 CDS Human protein_coding chr4:30724747 chr4:30724748 synonymous SNV . 0 22 hm5C_associated_SNPs_106961 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.278238 0 hm5C_site_60106 DeepMRMD:0.278238;iRNA_m5C:0 60107 chr11 128556493 128556493 1 + C A rs534901571 128556489 + 128556469 128556509 41 ACCGTCTCTCCCTCGCTCCACTCGCGGGTAACCGAGGCTTC ACCGTCTCTCCCTCGCTCCACTCGAGGGTAACCGAGGCTTC < 41bp 0.382608456212223 0.757389112139367 0.040059328 0.09992817 prediction 0.514778224278734 Functional Gain - LOC101929538 ENSG00000245008 ncRNA_exonic Human antisense chr11:128556489 chr11:128556493 . . 0 25 hm5C_associated_SNPs_106962 0 0 0 0 0 unknown 0.500231643877914 0.500231642004978 0 0 hm5C_site_60107 DeepMRMD:0;iRNA_m5C:0 60108 chr11 400353 400353 1 + C A CESC 400349 + 400329 400369 41 CCCAGGAACCTCAGCTCAGCCTCTCAGGCCACTCGCCAGAA CCCAGGAACCTCAGCTCAGCCTCTAAGGCCACTCGCCAGAA < 41bp 0.327757155166159 0.757384389762375 0.34596115 0.94051826 prediction 0.514768779524749 Functional Gain - PKP3 ENSG00000184363 CDS Human protein_coding chr11:400349 chr11:400353 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_106963 0 0 1 0 2 Ribosome 0.500231643921957 0.50023164392024 0.88103652 0 hm5C_site_60108 DeepMRMD:0.88103652;iRNA_m5C:0 60109 chr4 42403210 42403210 1 + C G HNSC 42403209 + 42403189 42403229 41 GCCCATGATCCTGACCTCCACCAGCCCCAGGGCACCCTCCC GCCCATGATCCTGACCTCCACGAGCCCCAGGGCACCCTCCC < 41bp 0.44671014079234 0.757368199967011 0.059016764 0.090103686 prediction 0.514736399934022 Functional Gain - SHISA3 ENSG00000178343 CDS Human protein_coding chr4:42403209 chr4:42403210 synonymous SNV . 0 22 hm5C_associated_SNPs_106964 0 0 0 0 0 exosome 0.500231643921126 0.500231643914485 0 0 hm5C_site_60109 DeepMRMD:0;iRNA_m5C:0 60110 chr2 234237186 234237186 1 + C T SKCM 234237185 + 234237165 234237205 41 CACTTGAGATGGGTCCCCAGCCCCGAGCTGAGGCGGCCTGG CACTTGAGATGGGTCCCCAGCTCCGAGCTGAGGCGGCCTGG < 41bp 0.509060422575349 0.766409623439151 0.12652728 0.15051284 prediction 0.514698401727603 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234237185 chr2:234237186 nonsynonymous SNV 0.723 4 22 hm5C_associated_SNPs_106965 0 0 0 0 2 Endoplasmic reticulum 0.500231643921248 0.500231643921127 0 0 hm5C_site_60110 DeepMRMD:0;iRNA_m5C:0 60111 chr3 12858760 12858760 1 + C A COAD 12858756 + 12858736 12858776 41 CCCCCGTGTGTGGACTATGCCAAACTCATCAGCCTGCTCAC CCCCCGTGTGTGGACTATGCCAAAATCATCAGCCTGCTCAC < 41bp 0.344177669689913 0.757345237816632 0.16097486 0.14772305 prediction 0.514690475633264 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12858756 chr3:12858760 nonsynonymous SNV 0.316 2 25 hm5C_associated_SNPs_106966 0 0 1 0 0 chromatin 0.500231657159673 0.500231630669091 0 0 hm5C_site_60111 DeepMRMD:0;iRNA_m5C:0 60112 chr11 108546440 108546440 1 + C A UCEC 108546436 + 108546416 108546456 41 AAACTGGATCTGGCAAGACTCTGGCTTTTCTTGTTCCAGTA AAACTGGATCTGGCAAGACTCTGGATTTTCTTGTTCCAGTA < 41bp 0.660633083215087 0.91795726887221 0.34493065 0.4047851 prediction 0.514648371314245 Functional Gain - DDX10 ENSG00000178105 CDS Human protein_coding chr11:108546436 chr11:108546440 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_106967 0 0 0 0 1 Nucleus 0.50022028886 0.500231173339088 0 2.17689581747393e-05 hm5C_site_60112 DeepMRMD:0;iRNA_m5C:2.17689581747393e-05 60113 chr16 31129108 31129108 1 + C G rs201871085 31129107 + 31129087 31129127 41 GCGGCCGCTGAGGGGACCGCCCCATCCCCGGGCCGCGTCTC GCGGCCGCTGAGGGGACCGCCGCATCCCCGGGCCGCGTCTC < 41bp 0.57138176159595 0.828690886615197 0.24694616 0.36801457 prediction 0.514618250038494 Functional Gain - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31129107 chr16:31129108 nonsynonymous SNV 0.950 0 22 hm5C_associated_SNPs_106968 0 0 1 0 0 Ribosome 0.500231643920802 0.500231643921245 0 8.85513884441025e-13 hm5C_site_60113 DeepMRMD:0;iRNA_m5C:8.85513884441025e-13 60114 chr7 150417951 150417951 1 + C G BLCA 150417950 + 150417930 150417970 41 CTGCTGCTGGGGGGCGCGCTCCTGTTCTGGGTGCTGCTCCA CTGCTGCTGGGGGGCGCGCTCGTGTTCTGGGTGCTGCTCCA < 41bp 0.456627879162156 0.757308889152778 0.18830076 0.63181835 prediction 0.514617778305556 Functional Gain - GIMAP1 ENSG00000213203 CDS Human protein_coding chr7:150417950 chr7:150417951 nonsynonymous SNV 0.002 2 22 hm5C_associated_SNPs_106969 0 0 0 0 0 exosome 0.500231643921093 0.500231643926516 0.2636367 1.08471009951927e-11 hm5C_site_60114 DeepMRMD:0.2636367;iRNA_m5C:1.08471009951927e-11 60115 chr3 169644483 169644483 1 + C A UCEC 169644479 + 169644459 169644499 41 GCTGCCTACCATGGCAGGAGCATGCTCCCTGCCGGTGACCT GCTGCCTACCATGGCAGGAGCATGATCCCTGCCGGTGACCT < 41bp 0.347588931978905 0.757306716807691 0.13840216 0.1940983 prediction 0.514613433615382 Functional Gain - SAMD7 ENSG00000187033 CDS Human protein_coding chr3:169644479 chr3:169644483 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_106970 0 0 0 0 0 membrane 0.500231643921115 0.500231643860181 0 0 hm5C_site_60115 DeepMRMD:0;iRNA_m5C:0 60116 chr1 168274383 168274383 1 + C A SKCM 168274382 + 168274362 168274402 41 TATTCGGGTCTCCGAGGACACCGGCAGGCTCCCTACCCTTC TATTCGGGTCTCCGAGGACACAGGCAGGCTCCCTACCCTTC < 41bp 0.500665949116418 0.757963499649951 0.41908693 0.39273134 prediction 0.514595101067066 Functional Gain - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168274382 chr1:168274383 synonymous SNV . 0 22 hm5C_associated_SNPs_106971 0 0 1 0 1 cytosol 0.500231643904113 0.500231643921094 0 3.39610561894688e-11 hm5C_site_60116 DeepMRMD:0;iRNA_m5C:3.39610561894688e-11 60117 chrX 65480022 65480022 1 + T C LUSC 65480020 + 65480000 65480040 41 TGGAGATGGTGGCCAGCAACCCTGGGACATGGCTGATGCAC TGGAGATGGTGGCCAGCAACCCCGGGACATGGCTGATGCAC < 41bp 0.483361552910911 0.757297524887482 0.5625789 0.86222076 prediction 0.514595049774964 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65480020 chrX:65480022 synonymous SNV . 0 23 hm5C_associated_SNPs_106972 0 0 1 0 2 Nucleus 0.500231735550463 0.500231643765554 0.59928372 0 hm5C_site_60117 DeepMRMD:0.59928372;iRNA_m5C:0 60118 chr1 79120723 79120723 1 + C A STAD 79120719 + 79120699 79120739 41 GCTCAGGAAGAGCTTACTGTCTGCCTTGAGAACTTATGAAC GCTCAGGAAGAGCTTACTGTCTGCATTGAGAACTTATGAAC < 41bp 0.66436965240929 0.921664052999372 0.07061565 0.1457988 prediction 0.514588801180165 Functional Gain - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79120719 chr1:79120723 synonymous SNV . 0 25 hm5C_associated_SNPs_106973 0 0 0 0 1 exosome 0.500231649473866 0.500231642647891 0 0 hm5C_site_60118 DeepMRMD:0;iRNA_m5C:0 60119 chr4 109088964 109088964 1 + C G rs374564051 109088963 + 109088943 109088983 41 CCGCTCCGCTGTGGGAGCACCCGCGCAACAGCAGGAAAGAC CCGCTCCGCTGTGGGAGCACCGGCGCAACAGCAGGAAAGAC < 41bp 0.458518070751698 0.757288133311826 0.5035035 0.7331645 prediction 0.514576266623652 Functional Gain - LEF1-AS1 ENSG00000232021 ncRNA_exonic Human processed_transcript chr4:109088963 chr4:109088964 . . 0 22 hm5C_associated_SNPs_106974 0 0 0 0 1 unknown 0.500231643958883 0.500231643920074 0.459322 0 hm5C_site_60119 DeepMRMD:0.459322;iRNA_m5C:0 60120 chr17 20140865 20140865 1 + T A rs145601167 20140861 + 20140841 20140881 41 TGCTCTTGAACTCCTGACCTCAGGTGATCCCCACCTCAGCC TGCTCTTGAACTCCTGACCTCAGGAGATCCCCACCTCAGCC < 41bp 0.491838699037203 0.757280575706839 0.9161825 0.9290468 prediction 0.514561151413678 Functional Gain - SPECC1 ENSG00000263494 ncRNA_intronic Human lincRNA chr17:20140861 chr17:20140865 . . 0 25 hm5C_associated_SNPs_106975 0 0 1 0 0 Cytosol 0.500231643901447 0.500231643920353 0.0257285999999999 3.78119757726836e-11 hm5C_site_60120 DeepMRMD:0.0257285999999999;iRNA_m5C:3.78119757726836e-11 60121 chr1 183196822 183196822 1 + C G SKCM 183196821 + 183196801 183196841 41 GGTGTGCAATAACTGCCCTCCCGGGGTCACCGGTAAGGCCA GGTGTGCAATAACTGCCCTCCGGGGGTCACCGGTAAGGCCA < 41bp 0.593360722689898 0.850633805697249 0.90423596 0.9073025 prediction 0.5145461660147 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183196821 chr1:183196822 synonymous SNV . 0 22 hm5C_associated_SNPs_106976 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.00613308000000012 0 hm5C_site_60121 DeepMRMD:0.00613308000000012;iRNA_m5C:0 60122 chr5 140595229 140595229 1 + C A BRCA 140595225 + 140595205 140595245 41 GTCTCCATCAACGCGGACAACGGCCACCTGTTCGCCCTCAG GTCTCCATCAACGCGGACAACGGCAACCTGTTCGCCCTCAG < 41bp 0.657132801406426 0.914403911675755 0.844288 0.9110656 prediction 0.514542220538657 Functional Gain - PCDHB13 ENSG00000187372 CDS Human protein_coding chr5:140595225 chr5:140595229 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_106977 0 0 0 0 0 exosome 0.500231643917276 0.500231643921678 0.1335552 8.80429062988242e-12 hm5C_site_60122 DeepMRMD:0.1335552;iRNA_m5C:8.80429062988242e-12 60123 chr16 57449107 57449107 1 + T C LUSC 57449105 + 57449085 57449125 41 GAGGACTGCTCCAGGGATGCCATCGTGTAAGTCCCCCTGGC GAGGACTGCTCCAGGGATGCCACCGTGTAAGTCCCCCTGGC < 41bp 0.503881496191253 0.761148964514834 0.4473456 0.42873943 prediction 0.514534936647162 Functional Gain - CCL17 ENSG00000102970 CDS Human protein_coding chr16:57449105 chr16:57449107 nonsynonymous SNV 0.158 4 23 hm5C_associated_SNPs_106978 0 0 0 0 1 exosome 0.500231643921093 0.500231643921698 0 1.2099210522365e-12 hm5C_site_60123 DeepMRMD:0;iRNA_m5C:1.2099210522365e-12 60124 chr12 124220151 124220151 1 + C G LUSC 124220147 + 124220127 124220167 41 GAGATCCAGGAGGGGCTGAACACCCGCATCCAGGATCTCTA GAGATCCAGGAGGGGCTGAACACCGGCATCCAGGATCTCTA < 41bp 0.55377850051121 0.811045895746667 0.104616046 0.22491026 prediction 0.514534790470913 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124220147 chr12:124220151 nonsynonymous SNV 0.082 5 25 hm5C_associated_SNPs_106979 0 0 1 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921094 0 3.33066907387547e-15 hm5C_site_60124 DeepMRMD:0;iRNA_m5C:3.33066907387547e-15 60125 chr11 66238762 66238762 1 + C G rs200291371 66238758 + 66238738 66238778 41 GACAAGGGCCGCCGGCGAAGCCGCCTGGCACTGAGCCGCCG GACAAGGGCCGCCGGCGAAGCCGCGTGGCACTGAGCCGCCG < 41bp 0.454857642064381 0.75726595725162 0.42967528 0.47050548 prediction 0.514531914503241 Functional Gain - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66238758 chr11:66238762 nonsynonymous SNV 0.999 3 25 hm5C_associated_SNPs_106980 0 0 0 0 1 Ribosome 0.500231643745985 0.50022941271811 0 0 hm5C_site_60125 DeepMRMD:0;iRNA_m5C:0 60126 chr19 46024625 46024625 1 + C A GBM 46024624 + 46024604 46024644 41 CACTTCCCACCTGGTCGGTCCCGAACGGCCCCTCCCCGGAG CACTTCCCACCTGGTCGGTCCAGAACGGCCCCTCCCCGGAG < 41bp 0.507135247204628 0.764396169208351 0.096737504 0.32782245 prediction 0.514521844007445 Functional Gain - VASP ENSG00000125753 CDS Human protein_coding chr19:46024624 chr19:46024625 nonsynonymous SNV 0.133 0 22 hm5C_associated_SNPs_106981 0 0 1 0 2 Ribosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_60126 DeepMRMD:0;iRNA_m5C:0 60127 chr1 152286118 152286118 1 + C G GBM 152286117 + 152286097 152286137 41 GCCTGACTACCGCTAGACCCCCGGTGTCCACGATCGCTGAC GCCTGACTACCGCTAGACCCCGGGTGTCCACGATCGCTGAC < 41bp 0.586061705255259 0.843320066134413 0.8336693 0.9305655 prediction 0.514516721758308 Functional Gain - FLG ENSG00000143631 CDS Human protein_coding chr1:152286117 chr1:152286118 nonsynonymous SNV 0.000 2 22 hm5C_associated_SNPs_106982 0 0 0 0 0 exosome 0.500231694354825 0.50023350594258 0.1937924 3.62317551050317e-06 hm5C_site_60127 DeepMRMD:0.1937924;iRNA_m5C:3.62317551050317e-06 60128 chr9 34506683 34506683 1 + C A UCEC 34506679 + 34506659 34506699 41 GCTCTACAGCCTGAAGAACCCCAGCTTCCCTGAGTACATGT GCTCTACAGCCTGAAGAACCCCAGATTCCCTGAGTACATGT < 41bp 0.344939216566706 0.75725761083671 0.26460803 0.3470642 prediction 0.514515221673419 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34506679 chr9:34506683 nonsynonymous SNV 0.972 2 25 hm5C_associated_SNPs_106983 0 0 0 0 1 unknown 0.500231645281953 0.500231643917907 0 0 hm5C_site_60128 DeepMRMD:0;iRNA_m5C:0 60129 chr5 72419495 72419495 1 + C G rs146940706 72419491 + 72419471 72419511 41 AGAGGTCAGCAGATGGACCCCGACCGAGCCTTCATCTGTGG AGAGGTCAGCAGATGGACCCCGACGGAGCCTTCATCTGTGG < 41bp 0.575362058788883 0.832608360144887 0.12061155 0.12044576 prediction 0.514492602712007 Functional Gain - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72419491 chr5:72419495 nonsynonymous SNV 0.300 0 25 hm5C_associated_SNPs_106984 0 0 0 0 0 Ribosome 0.500231643921117 0.500231643921579 0 9.2281737806843e-13 hm5C_site_60129 DeepMRMD:0;iRNA_m5C:9.2281737806843e-13 60130 chr5 68715269 68715269 1 + C G SKCM 68715265 + 68715245 68715285 41 CAGGCGCTACGATGAGGTCCCAAGCGACCTGCCCTATCAAG CAGGCGCTACGATGAGGTCCCAAGGGACCTGCCCTATCAAG < 41bp 0.469550532215383 0.75723986395374 0.1288507 0.598951 prediction 0.51447972790748 Functional Gain - MARVELD2 ENSG00000152939 CDS Human protein_coding chr5:68715265 chr5:68715269 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106985 0 0 1 0 0 Nucleus 0.500231641907663 0.50023164392707 0.197902 4.03881350585777e-09 hm5C_site_60130 DeepMRMD:0.197902;iRNA_m5C:4.03881350585777e-09 60131 chr3 128624975 128624975 1 + C A CESC 128624974 + 128624954 128624994 41 CACCCCACAGGTGTTCAGCTCCGAGGCCGCCTGGCAGTGTG CACCCCACAGGTGTTCAGCTCAGAGGCCGCCTGGCAGTGTG < 41bp 0.515424170027492 0.772659823646895 0.4637661 0.6506394 prediction 0.514471307238806 Functional Gain - ACAD9 ENSG00000177646 CDS Human protein_coding chr3:128624974 chr3:128624975 synonymous SNV . 0 22 hm5C_associated_SNPs_106986 0 0 1 0 1 Endoplasmic reticulum 0.500231447196737 0.50023209841975 0.3012788 1.30244602614127e-06 hm5C_site_60131 DeepMRMD:0.3012788;iRNA_m5C:1.30244602614127e-06 60132 chrX 601743 601743 1 + T C SKCM 601741 + 601721 601761 41 CCTTTGGACACAGGCGTCATCTTGGGCACAGCCAACCACCT CCTTTGGACACAGGCGTCATCTCGGGCACAGCCAACCACCT < 41bp 0.51468304315104 0.771906120353559 0.41269207 0.43662384 prediction 0.514446154405038 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:601741 chrX:601743 nonsynonymous SNV 0.078 4 23 hm5C_associated_SNPs_106987 0 0 0 0 2 Nucleus 0.500231643921092 0.500231871687983 0 4.55533781140716e-07 hm5C_site_60132 DeepMRMD:0;iRNA_m5C:4.55533781140716e-07 60133 chr5 137754692 137754692 1 + T G OV 137754689 + 137754669 137754709 41 TCTGGAAACGAAACTACCTTCTCTGGTGGAGGAGGACCGGC TCTGGAAACGAAACTACCTTCTCGGGTGGAGGAGGACCGGC < 41bp 0.37721505752288 0.757222355373962 0.22768325 0.17281911 prediction 0.514444710747925 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137754689 chr5:137754692 synonymous SNV . 0 24 hm5C_associated_SNPs_106988 0 0 1 0 1 Nucleus 0.500231643921092 0.5002316439178 0 0 hm5C_site_60133 DeepMRMD:0;iRNA_m5C:0 60134 chr5 140476285 140476285 1 + T G CESC 140476282 + 140476262 140476302 41 AGGCTGCTGAGGGAGCGCGACGCTGCCAAGCAGAGGCTGGT AGGCTGCTGAGGGAGCGCGACGCGGCCAAGCAGAGGCTGGT < 41bp 0.374581076155351 0.757216096949554 0.080046475 0.22127336 prediction 0.514432193899108 Functional Gain - PCDHB2 ENSG00000112852 CDS Human protein_coding chr5:140476282 chr5:140476285 synonymous SNV . 0 24 hm5C_associated_SNPs_106989 0 0 1 0 0 exosome 0.500231644510513 0.500231643603184 0 0 hm5C_site_60134 DeepMRMD:0;iRNA_m5C:0 60135 chr5 180591159 180591159 1 + C G rs547731362 180591158 + 180591138 180591178 41 CAGAAAACGCGTGCAAGTTTCCGTAGTGTAGTGGTTATCAC CAGAAAACGCGTGCAAGTTTCGGTAGTGTAGTGGTTATCAC < 41bp 0.479871050151556 0.757210450967747 0.37760574 0.34311122 prediction 0.514420901935493 Functional Gain - OR2V2;LINC01962 ENSG00000182613;ENSG00000248473 intergenic Human other chr5:180591158 chr5:180591159 . . 0 22 hm5C_associated_SNPs_106990 0 0 0 0 0 unknown 0.500222116413061 0.500231411414141 0 1.85900021607566e-05 hm5C_site_60135 DeepMRMD:0;iRNA_m5C:1.85900021607566e-05 60136 chr20 61455823 61455823 1 + C T rs150148851 61455822 + 61455802 61455842 41 AAGTATCTGCCCGCCAGGTCCCCCAGGGCCCCCTGGAATGC AAGTATCTGCCCGCCAGGTCCTCCAGGGCCCCCTGGAATGC < 41bp 0.535001126985632 0.792210622602748 0.05994287 0.9498712 prediction 0.514418991234233 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61455822 chr20:61455823 synonymous SNV . 0 22 hm5C_associated_SNPs_106991 2 0 1 0 2 Cytosol 0.500231643752805 0.500231643935774 0.8997424 3.65939056834463e-10 hm5C_site_60136 DeepMRMD:0.8997424;iRNA_m5C:3.65939056834463e-10 not specified not specified 60137 chr5 137682483 137682483 1 + C A STAD 137682479 + 137682459 137682499 41 GTTCATGGCCTGTAGCCCCCCACCCCTCTCTGCTTCCTGCA GTTCATGGCCTGTAGCCCCCCACCACTCTCTGCTTCCTGCA < 41bp 0.339946093123589 0.757207728905069 0.035502523 0.043928802 prediction 0.514415457810139 Functional Gain - FAM53C ENSG00000120709 CDS Human protein_coding chr5:137682479 chr5:137682483 synonymous SNV . 0 25 hm5C_associated_SNPs_106992 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921055 0 0 hm5C_site_60137 DeepMRMD:0;iRNA_m5C:0 60138 chr19 30101445 30101445 1 + C T ESCA 30101444 + 30101424 30101464 41 GTCCTGGAGTACTTCACCCGCCACAAGCGCAAGGAGAAGAA GTCCTGGAGTACTTCACCCGCTACAAGCGCAAGGAGAAGAA < 41bp 0.507593945615126 0.764793292713195 0.28459692 0.50173277 prediction 0.514398694196138 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30101444 chr19:30101445 nonsynonymous SNV 0.178 0 22 hm5C_associated_SNPs_106993 0 0 1 0 1 Ribosome 0.500231643929968 0.500231643921147 0.0034655400000001 0 hm5C_site_60138 DeepMRMD:0.0034655400000001;iRNA_m5C:0 60139 chrX 49029519 49029519 1 + C A LUAD 49029518 + 49029498 49029538 41 TCTGCTTCAGTGCCTCCACACCAGGCTACTCCTCCCTGTCG TCTGCTTCAGTGCCTCCACACAAGGCTACTCCTCCCTGTCG < 41bp 0.50496990802231 0.762168225255693 0.8375356 0.9363687 prediction 0.514396634466765 Functional Gain - PLP2 ENSG00000102007 CDS Human protein_coding chrX:49029518 chrX:49029519 nonsynonymous SNV 0.986 0 22 hm5C_associated_SNPs_106994 0 0 1 0 1 Ribosome 0.500235640607534 0.500231643950006 0.1976662 0 hm5C_site_60139 DeepMRMD:0.1976662;iRNA_m5C:0 60140 chr11 63963245 63963245 1 + C A SKCM 63963244 + 63963224 63963264 41 CTCCCAAAAAGGAGACCAAGCCAGAGCCAATGGAAGAAGAT CTCCCAAAAAGGAGACCAAGCAAGAGCCAATGGAAGAAGAT < 41bp 0.511474083291751 0.768662625615289 0.39001304 0.6422776 prediction 0.514377084647076 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63963244 chr11:63963245 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_106995 0 0 1 0 1 Ribosome 0.500231643921247 0.500231643921762 0.2845552 1.03006492224722e-12 hm5C_site_60140 DeepMRMD:0.2845552;iRNA_m5C:1.03006492224722e-12 60141 chr20 32336830 32336830 1 + C A UCEC 32336826 + 32336806 32336846 41 TGTGCTCATGTCTGCCATGTCAGCCTTCACATCCCTGGACC TGTGCTCATGTCTGCCATGTCAGCATTCACATCCCTGGACC < 41bp 0.669116778339214 0.926302673938091 0.15171754 0.26876682 prediction 0.514371791197753 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32336826 chr20:32336830 synonymous SNV . 0 25 hm5C_associated_SNPs_106996 0 0 0 0 1 chromatin 0.50023164493953 0.500231643705834 0 0 hm5C_site_60141 DeepMRMD:0;iRNA_m5C:0 60142 chrX 11783889 11783889 1 + C G LUSC 11783885 + 11783865 11783905 41 GTGCCCCAGGCCGGGGAGAGCCAGCGTGTACTTTGTGTTTA GTGCCCCAGGCCGGGGAGAGCCAGGGTGTACTTTGTGTTTA < 41bp 0.475873088385778 0.757184879705133 0.4262005 0.9115124 prediction 0.514369759410266 Functional Gain - MSL3 ENSG00000005302 CDS Human protein_coding chrX:11783885 chrX:11783889 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_106997 0 0 1 0 1 Cytosol 0.500231648725596 0.500231643921092 0.8230248 0 hm5C_site_60142 DeepMRMD:0.8230248;iRNA_m5C:0 60143 chr19 10578180 10578180 1 + C G LUAD 10578179 + 10578159 10578199 41 CACGGCGGCCGAGGTGGAGGCCCAACGAGAGCACCAGGCTG CACGGCGGCCGAGGTGGAGGCGCAACGAGAGCACCAGGCTG < 41bp 0.449624684012922 0.757168401233971 0.39482456 0.41490602 prediction 0.514336802467942 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10578179 chr19:10578180 synonymous SNV . 0 22 hm5C_associated_SNPs_106998 0 0 0 0 0 chromatin 0.500231642801363 0.500231644637646 0 3.67256669520089e-09 hm5C_site_60143 DeepMRMD:0;iRNA_m5C:3.67256669520089e-09 60144 chr12 131649768 131649768 1 + C A rs11061358 131649764 + 131649744 131649784 41 GTGTCCAGATGCAGGGAGCACTCGCCTGTGCTGTAAGTCTG GTGTCCAGATGCAGGGAGCACTCGACTGTGCTGTAAGTCTG < 41bp 0.635602598955873 0.892764675650259 0.34314752 0.80455065 prediction 0.514324153388773 Functional Gain - LINC01257 ENSG00000204603 ncRNA_exonic Human lincRNA chr12:131649764 chr12:131649768 . . 0 25 hm5C_associated_SNPs_106999 0 0 0 0 1 unknown 0.500231643911224 0.500231729760927 0.6091013 1.71699406026349e-07 hm5C_site_60144 DeepMRMD:0.6091013;iRNA_m5C:1.71699406026349e-07 60145 chr4 26585705 26585705 1 + C G rs369539403 26585704 + 26585684 26585724 41 TAACGCCCGCTGGAGGAGTCCCAGTGTAATAAGGTCCCGGA TAACGCCCGCTGGAGGAGTCCGAGTGTAATAAGGTCCCGGA < 41bp 0.541685061541368 0.798842354743179 0.23071751 0.31159055 prediction 0.514314586403622 Functional Gain - TBC1D19 ENSG00000109680 UTR5 Human protein_coding chr4:26585704 chr4:26585705 . . 0 22 hm5C_associated_SNPs_107000 0 0 1 0 0 Endoplasmic reticulum 0.500231643921094 0.500231642590722 0 0 hm5C_site_60145 DeepMRMD:0;iRNA_m5C:0 60146 chr3 107097304 107097304 1 + C G LUAD 107097303 + 107097283 107097323 41 TGAGGAACCCCAGGTCATAACCCAGAGATACTGTCCATTCA TGAGGAACCCCAGGTCATAACGCAGAGATACTGTCCATTCA < 41bp 0.581833398588192 0.8389861886987 0.43959153 0.7801665 prediction 0.514305580221016 Functional Gain - CCDC54 ENSG00000138483 CDS Human protein_coding chr3:107097303 chr3:107097304 synonymous SNV . 0 22 hm5C_associated_SNPs_107001 0 0 0 0 0 unknown 0.500231643946413 0.500231660325731 0.560333 3.27586342496744e-08 hm5C_site_60146 DeepMRMD:0.560333;iRNA_m5C:3.27586342496744e-08 60147 chr12 7286194 7286194 1 + T C UCEC 7286192 + 7286172 7286212 41 AGATCTGCGGCTTCCGGCTCCATGGGTCTGGGGTGCCCTTT AGATCTGCGGCTTCCGGCTCCACGGGTCTGGGGTGCCCTTT < 41bp 0.493016496879819 0.757148156895332 0.8757094 0.89264095 prediction 0.514296313790664 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7286192 chr12:7286194 synonymous SNV . 0 23 hm5C_associated_SNPs_107002 0 0 1 0 1 Endoplasmic reticulum 0.500231643921088 0.50023164392106 0.0338631 0 hm5C_site_60147 DeepMRMD:0.0338631;iRNA_m5C:0 60148 chr22 46693337 46693337 1 + C G rs201036893 46693336 + 46693316 46693356 41 CGCGATGAGCCTTCAGCCTGCCGGGCAGGGGACGTGAACAT CGCGATGAGCCTTCAGCCTGCGGGGCAGGGGACGTGAACAT < 41bp 0.595117855775037 0.852265811970637 0.0802671 0.40297836 prediction 0.514295912391199 Functional Gain - GTSE1 ENSG00000075218 CDS Human protein_coding chr22:46693336 chr22:46693337 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_107003 0 0 1 0 1 Ribosome 0.500231708037686 0.500231813044523 0 2.10013675783216e-07 hm5C_site_60148 DeepMRMD:0;iRNA_m5C:2.10013675783216e-07 60149 chr1 35223178 35223178 1 + C A BLCA 35223177 + 35223157 35223197 41 CTCTGGGCCCTGCAGCTTATCCTGGTGACATGCCCCTCACT CTCTGGGCCCTGCAGCTTATCATGGTGACATGCCCCTCACT < 41bp 0.497541358594634 0.757147620292583 0.870592 0.9097052 prediction 0.514295240585165 Functional Gain - GJB5 ENSG00000189280 CDS Human protein_coding chr1:35223177 chr1:35223178 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_107004 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.0782263999999999 0 hm5C_site_60149 DeepMRMD:0.0782263999999999;iRNA_m5C:0 60150 chrX 153627725 153627725 1 + C G LUSC 153627721 + 153627701 153627741 41 CCGTACCCAAAGTCTCGCTTCTGCCGAGGTGTCCCTGGTAA CCGTACCCAAAGTCTCGCTTCTGCGGAGGTGTCCCTGGTAA < 41bp 0.464071276016941 0.757140994471392 0.10429132 0.29828474 prediction 0.514281988942784 Functional Gain - RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627721 chrX:153627725 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_107005 0 0 1 0 1 Cytosol 0.500231643921099 0.500231643921423 0 6.48370246381091e-13 hm5C_site_60150 DeepMRMD:0;iRNA_m5C:6.48370246381091e-13 60151 chrX 54955517 54955517 1 + T G UCEC 54955515 + 54955495 54955535 41 ACACTGAGCACTAGCTCCAGCTTCAGCAGCGCAGCCAGCAT ACACTGAGCACTAGCTCCAGCTGCAGCAGCGCAGCCAGCAT < 41bp 0.427578591297118 0.757105756129611 0.040044278 0.15889913 prediction 0.514211512259222 Functional Gain - TRO ENSG00000067445 CDS Human protein_coding chrX:54955515 chrX:54955517 nonsynonymous SNV 0.004 2 23 hm5C_associated_SNPs_107006 0 0 1 0 0 exosome 0.500232381257959 0.500233157036627 0 1.55155733527756e-06 hm5C_site_60151 DeepMRMD:0;iRNA_m5C:1.55155733527756e-06 60152 chr20 62851173 62851173 1 + C A rs144837780 62851172 + 62851152 62851192 41 CAGCAGCTGCAGCAGCAGCCCCGGTGTGAAGTCTCCCGACG CAGCAGCTGCAGCAGCAGCCCAGGTGTGAAGTCTCCCGACG < 41bp 0.522301510763611 0.779404874667345 0.9066156 0.9314877 prediction 0.514206727807468 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62851172 chr20:62851173 synonymous SNV . 0 22 hm5C_associated_SNPs_107007 0 0 0 0 0 exosome 0.500231643923252 0.50023164393732 0.0497442000000001 2.81368262022852e-11 hm5C_site_60152 DeepMRMD:0.0497442000000001;iRNA_m5C:2.81368262022852e-11 60153 chr10 63212987 63212987 1 + C G rs541742422 63212986 + 63212966 63213006 41 CTCACCCTCAGCGCCCGATGCCGGTAGAACTGGTGCGCGGC CTCACCCTCAGCGCCCGATGCGGGTAGAACTGGTGCGCGGC < 41bp 0.451600545819722 0.757094757806976 0.85136616 0.90254736 prediction 0.514189515613951 Functional Gain - TMEM26-AS1 ENSG00000237233 ncRNA_exonic Human antisense chr10:63212986 chr10:63212987 . . 0 22 hm5C_associated_SNPs_107008 0 0 0 0 1 unknown 0.500231702185021 0.500231643985584 0.1023624 0 hm5C_site_60153 DeepMRMD:0.1023624;iRNA_m5C:0 60154 chr10 75533411 75533411 1 + T C UCEC 75533409 + 75533389 75533429 41 CTCAACGGCTTCGAGTGTTTCGTCTGTGACTACGAACTGGC CTCAACGGCTTCGAGTGTTTCGCCTGTGACTACGAACTGGC < 41bp 0.52473553832741 0.781823002297361 0.108225435 0.054242104 prediction 0.514174927939903 Functional Gain - FUT11 ENSG00000196968 CDS Human protein_coding chr10:75533409 chr10:75533411 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_107009 0 0 1 0 0 Endoplasmic reticulum 0.500231647089796 0.500231644642076 0 0 hm5C_site_60154 DeepMRMD:0;iRNA_m5C:0 60155 chr20 25187891 25187891 1 + C G LUAD 25187887 + 25187867 25187907 41 CTTCTTCAGCATCACCAGGGCAGCCCCGGGGGCCCGGTGGG CTTCTTCAGCATCACCAGGGCAGCGCCGGGGGCCCGGTGGG < 41bp 0.544145705323851 0.801230757986325 0.20195013 0.26724756 prediction 0.514170105324949 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25187887 chr20:25187891 synonymous SNV . 0 25 hm5C_associated_SNPs_107010 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_60155 DeepMRMD:0;iRNA_m5C:0 60156 chr1 111892811 111892811 1 + T A LUSC 111892807 + 111892787 111892827 41 TTGGATCTCCAGACTGGGCTCAGGTTCCATGTCTACAGAAA TTGGATCTCCAGACTGGGCTCAGGATCCATGTCTACAGAAA < 41bp 0.5978600137057 0.854941786109932 0.17002651 0.68340456 prediction 0.514163544808463 Functional Gain - PIFO ENSG00000173947 CDS Human protein_coding chr1:111892807 chr1:111892811 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_107011 0 0 0 0 2 exosome 0.500231643921237 0.500231643921092 0.36680912 0 hm5C_site_60156 DeepMRMD:0.36680912;iRNA_m5C:0 60157 chr2 232574963 232574963 1 + C G rs371087536 232574959 + 232574939 232574979 41 GAGCCCGGCCGACCGACGCGCGACCCGCGCGCGTGCCACTG GAGCCCGGCCGACCGACGCGCGACGCGCGCGCGTGCCACTG < 41bp 0.549488964031195 0.80657068960706 0.10427517 0.3301754 prediction 0.514163451151729 Functional Gain - PTMA ENSG00000187514 CDS Human protein_coding chr2:232574959 chr2:232574963 synonymous SNV . 0 25 hm5C_associated_SNPs_107012 0 0 1 0 0 Ribosome 0.500505706598124 0.501425239031023 0 0.00183906486579799 hm5C_site_60157 DeepMRMD:0;iRNA_m5C:0.00183906486579799 60158 chr19 36120454 36120454 1 + C G LUAD 36120453 + 36120433 36120473 41 AAGTTCTGGGGGCTCCAGTACCTGGAATCCCAACTGCTGTG AAGTTCTGGGGGCTCCAGTACGTGGAATCCCAACTGCTGTG < 41bp 0.444951467238424 0.757081472375478 0.33947432 0.4548653 prediction 0.514162944750955 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36120453 chr19:36120454 nonsynonymous SNV 0.980 1 22 hm5C_associated_SNPs_107013 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60158 DeepMRMD:0;iRNA_m5C:0 60159 chr12 121437273 121437273 1 + T A SKCM 121437269 + 121437249 121437289 41 CATCCCCCGGGCTCAGGAGGCTGCTCTGCTCCCCCAGGTCT CATCCCCCGGGCTCAGGAGGCTGCACTGCTCCCCCAGGTCT < 41bp 0.43911579242076 0.75708091327755 0.34111187 0.38420317 prediction 0.5141618265551 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437269 chr12:121437273 synonymous SNV . 0 25 hm5C_associated_SNPs_107014 0 0 0 0 1 cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_60159 DeepMRMD:0;iRNA_m5C:0 60160 chr1 248685079 248685079 1 + C A LUAD 248685075 + 248685055 248685095 41 CTTGAGCCTTCTGGGGAACACTGCCCTCATACTAGTATGTT CTTGAGCCTTCTGGGGAACACTGCACTCATACTAGTATGTT < 41bp 0.368461454160339 0.75707882794428 0.017095298 0.13131198 prediction 0.51415765588856 Functional Gain - OR2G6 ENSG00000188558 CDS Human protein_coding chr1:248685075 chr1:248685079 synonymous SNV . 0 25 hm5C_associated_SNPs_107015 0 0 0 0 0 unknown 0.500231643921093 0.50023164390749 0 0 hm5C_site_60160 DeepMRMD:0;iRNA_m5C:0 60161 chr12 122620165 122620165 1 + C A rs532135984 122620161 + 122620141 122620181 41 CAAGACCCCCTGGGGAAGGGCGAGCAGGTCCCGCTGCATGG CAAGACCCCCTGGGGAAGGGCGAGAAGGTCCCGCTGCATGG < 41bp 0.36624655670933 0.757059459572092 0.27558836 0.30528092 prediction 0.514118919144183 Functional Gain - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122620161 chr12:122620165 nonsynonymous SNV 0.992 1 25 hm5C_associated_SNPs_107016 0 0 1 0 1 chromatin 0.500231643921094 0.500231643868687 0 0 hm5C_site_60161 DeepMRMD:0;iRNA_m5C:0 60162 chr1 163044208 163044208 1 + T C UCEC 163044206 + 163044186 163044226 41 GCCCAGAAGAAGATTTTCAACCTGATGGAGAAGGATTCCTA GCCCAGAAGAAGATTTTCAACCCGATGGAGAAGGATTCCTA < 41bp 0.544655525489877 0.80169594490625 0.06759751 0.07176611 prediction 0.514080838832747 Functional Gain - RGS4 ENSG00000117152 CDS Human protein_coding chr1:163044206 chr1:163044208 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_107017 0 0 0 1 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60162 DeepMRMD:0;iRNA_m5C:0 60163 chr20 4155834 4155834 1 + T C UCEC 4155832 + 4155812 4155852 41 TGGCTGCAGCCAAAGCACTTCTTGAGCAGGGTTTCACGGAT TGGCTGCAGCCAAAGCACTTCTCGAGCAGGGTTTCACGGAT < 41bp 0.541119199419684 0.798148173063199 0.14690074 0.8065689 prediction 0.51405794728703 Functional Gain - SMOX ENSG00000088826 CDS Human protein_coding chr20:4155832 chr20:4155834 synonymous SNV . 0 23 hm5C_associated_SNPs_107018 0 0 0 0 1 Ribosome 0.500231915469592 0.500232244115997 0.6131378 6.57292809735921e-07 hm5C_site_60163 DeepMRMD:0.6131378;iRNA_m5C:6.57292809735921e-07 60164 chr8 26505233 26505233 1 + C T STAD 26505232 + 26505212 26505252 41 AACCTTTACCCCCGGAAAGGCCGCATTGCTGTGGGATCCGA AACCTTTACCCCCGGAAAGGCTGCATTGCTGTGGGATCCGA < 41bp 0.488010577553805 0.757024684902735 0.054781497 0.04930502 prediction 0.514049369805469 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26505232 chr8:26505233 nonsynonymous SNV 0.987 4 22 hm5C_associated_SNPs_107019 0 0 1 0 1 Nucleus 0.500231643921093 0.500231643921092 0 0 hm5C_site_60164 DeepMRMD:0;iRNA_m5C:0 60165 chr4 6718548 6718548 1 + C G rs35013424 6718547 + 6718527 6718567 41 AGCCCCCGTCCTGTTTCGGACCGAAGACTACTTCCCTTGTT AGCCCCCGTCCTGTTTCGGACGGAAGACTACTTCCCTTGTT < 41bp 0.591051053237707 0.848073970698512 0.23286483 0.7294119 prediction 0.51404583492161 Functional Gain - BLOC1S4 ENSG00000186222 CDS Human protein_coding chr4:6718547 chr4:6718548 synonymous SNV . 0 22 hm5C_associated_SNPs_107020 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921092 0.4588238 0 hm5C_site_60165 DeepMRMD:0.4588238;iRNA_m5C:0 60166 chr10 73115961 73115961 1 + T C UCEC 73115959 + 73115939 73115979 41 ACTGTCTTCCTCGTGCTCTGCATGGGACTCTACCTGCTGCT ACTGTCTTCCTCGTGCTCTGCACGGGACTCTACCTGCTGCT < 41bp 0.50899229779563 0.766009719980169 0.4372403 0.6427599 prediction 0.514034844369077 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115959 chr10:73115961 nonsynonymous SNV 0.061 1 23 hm5C_associated_SNPs_107021 0 0 0 0 2 chromatin 0.500231164853409 0.500231646497464 0.2855198 9.63288110167326e-07 hm5C_site_60166 DeepMRMD:0.2855198;iRNA_m5C:9.63288110167326e-07 60167 chr5 81267876 81267876 1 + C G rs543141983 81267875 + 81267855 81267895 41 TCCGACTCGGCCGTGGCGGACCTGACTGAAGGAGGCCGCGG TCCGACTCGGCCGTGGCGGACGTGACTGAAGGAGGCCGCGG < 41bp 0.5652449649462 0.82225553559661 0.37575945 0.866156 prediction 0.514021141300819 Functional Gain - ATG10 ENSG00000152348 UTR5 Human protein_coding chr5:81267875 chr5:81267876 . . 0 22 hm5C_associated_SNPs_107022 0 0 1 0 0 Nucleus 0.50023164800235 0.50023164613248 0.732312 0 hm5C_site_60167 DeepMRMD:0.732312;iRNA_m5C:0 60168 chr17 78022497 78022497 1 + C A PRAD 78022496 + 78022476 78022516 41 CATGGCAGAGAGAGTGGAGTCCGAGGGGAGTGACGAGGAAG CATGGCAGAGAGAGTGGAGTCAGAGGGGAGTGACGAGGAAG < 41bp 0.524555270439136 0.78156200321814 0.6836939 0.8292029 prediction 0.514013465558008 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022496 chr17:78022497 synonymous SNV . 0 22 hm5C_associated_SNPs_107023 0 0 1 0 1 exosome 0.500231643926637 0.500231660770227 0.291018 3.36871803785499e-08 hm5C_site_60168 DeepMRMD:0.291018;iRNA_m5C:3.36871803785499e-08 60169 chr19 35512755 35512755 1 + C A GBM 35512751 + 35512731 35512771 41 TCCTGACCCCTGTGCCCGGGCCGGCATTCACACCTCGGGTA TCCTGACCCCTGTGCCCGGGCCGGAATTCACACCTCGGGTA < 41bp 0.36166456665024 0.756988825161886 0.31266063 0.38162044 prediction 0.513977650323773 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35512751 chr19:35512755 synonymous SNV . 0 25 hm5C_associated_SNPs_107024 0 0 1 0 1 Endoplasmic reticulum 0.500231640772143 0.500229193978421 0 0 hm5C_site_60169 DeepMRMD:0;iRNA_m5C:0 60170 chr12 2932026 2932026 1 + C T UCEC 2932025 + 2932005 2932045 41 ACATATATCATTGATCACAACCGCACCGTCGTCCGCTTCCA ACATATATCATTGATCACAACTGCACCGTCGTCCGCTTCCA < 41bp 0.491365851853022 0.756981507189493 0.24520391 0.30519313 prediction 0.513963014378987 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2932025 chr12:2932026 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_107025 0 0 1 0 2 nucleoplasm 0.500231414998435 0.500230822376999 0 0 hm5C_site_60170 DeepMRMD:0;iRNA_m5C:0 60171 chr3 189612184 189612184 1 + C G SKCM 189612180 + 189612160 189612200 41 GTTATTGATGCTGTGCGATTCACCCTCCGCCAGACCATCTC GTTATTGATGCTGTGCGATTCACCGTCCGCCAGACCATCTC < 41bp 0.491614284735918 0.756981154424086 0.019912362 0.0518758 prediction 0.513962308848173 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189612180 chr3:189612184 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_107026 0 0 0 0 0 chromatin 0.500231643920327 0.500231644242993 0 6.45332232096507e-10 hm5C_site_60171 DeepMRMD:0;iRNA_m5C:6.45332232096507e-10 60172 chrY 6948806 6948806 1 + T C ACC 6948804 + 6948784 6948824 41 GATGTGGACTGGCAGAACAACATGACCTTTGCCTCCTGTAG GATGTGGACTGGCAGAACAACACGACCTTTGCCTCCTGTAG < 41bp 0.52616292299861 0.783142198622386 0.20905939 0.28026575 prediction 0.513958551247552 Functional Gain - TBL1Y ENSG00000092377 CDS Human protein_coding chrY:6948804 chrY:6948806 nonsynonymous SNV 0.916 0 23 hm5C_associated_SNPs_107027 0 0 0 0 2 membrane 0.500231641745698 0.500231606240968 0 0 hm5C_site_60172 DeepMRMD:0;iRNA_m5C:0 60173 chr5 74655889 74655889 1 + T C UCEC 74655887 + 74655867 74655907 41 GCCCGAATTGTGTGTGGGACCGTAATGGCTGGGGAATTGTC GCCCGAATTGTGTGTGGGACCGCAATGGCTGGGGAATTGTC < 41bp 0.554660949650175 0.811639016979858 0.2679339 0.18463272 prediction 0.513956134659367 Functional Gain - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74655887 chr5:74655889 nonsynonymous SNV 0.683 3 23 hm5C_associated_SNPs_107028 0 0 1 0 2 Nucleus 0.500231643918154 0.500231643920104 0 3.89976939629832e-12 hm5C_site_60173 DeepMRMD:0;iRNA_m5C:3.89976939629832e-12 60174 chr17 51900660 51900660 1 + C G LUAD 51900656 + 51900636 51900676 41 CAGCTCTGGACTCTGCTGAACACCCCATGCCGCCCCCGCCC CAGCTCTGGACTCTGCTGAACACCGCATGCCGCCCCCGCCC < 41bp 0.457701690579795 0.756977554697505 0.1856241 0.2914921 prediction 0.513955109395009 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51900656 chr17:51900660 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_107029 0 0 0 0 0 exosome 0.500231643920961 0.500231643920633 0 0 hm5C_site_60174 DeepMRMD:0;iRNA_m5C:0 60175 chr18 13643392 13643392 1 + C G rs202135989 13643391 + 13643371 13643411 41 GGCCTTCAGACAGCGCCGCACCGCGGCTGGGCGCCTCGGAG GGCCTTCAGACAGCGCCGCACGGCGGCTGGGCGCCTCGGAG < 41bp 0.460576135106324 0.756973682819104 0.2979771 0.60345674 prediction 0.513947365638208 Functional Gain - LDLRAD4 ENSG00000168675 CDS Human protein_coding chr18:13643391 chr18:13643392 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_107030 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921092 0.20691348 1.33226762955019e-15 hm5C_site_60175 DeepMRMD:0.20691348;iRNA_m5C:1.33226762955019e-15 60176 chr6 109575736 109575736 1 + T C ESCA 109575734 + 109575714 109575754 41 GCACAAGTGATGACGGACATCGTGCACCGACGCCCGAGGTT GCACAAGTGATGACGGACATCGCGCACCGACGCCCGAGGTT < 41bp 0.485415479004939 0.756969474207385 0.25474682 0.24696895 prediction 0.51393894841477 Functional Gain - C6orf183 ENSG00000243587;ENSG00000233908 intergenic Human other chr6:109575734 chr6:109575736 . . 0 23 hm5C_associated_SNPs_107031 0 0 0 0 1 unknown 0.500238717014269 0.500231942938712 0 0 hm5C_site_60176 DeepMRMD:0;iRNA_m5C:0 60177 chr3 97983503 97983503 1 + C G rs76896666 97983502 + 97983482 97983522 41 TTCCCTTGTAACCACTGTAACCACAGAATGTTTTCTCTTGG TTCCCTTGTAACCACTGTAACGACAGAATGTTTTCTCTTGG < 41bp 0.569516076787603 0.826480400462724 0.26346254 0.32950246 prediction 0.513928647350241 Functional Gain - OR5H6 ENSG00000230301 CDS Human protein_coding chr3:97983502 chr3:97983503 synonymous SNV . 0 22 hm5C_associated_SNPs_107032 0 0 0 0 0 unknown 0.500231644344942 0.500231643921094 0 0 hm5C_site_60177 DeepMRMD:0;iRNA_m5C:0 60178 chr10 103190141 103190141 1 + C G LUSC 103190137 + 103190117 103190157 41 TCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCC TCTCTGTGGCTGGGCTGCTCCAGCGTGGCGGACAGCATGCC < 41bp 0.471454943336547 0.756964228328987 0.4778318 0.59435725 prediction 0.513928456657974 Functional Gain - BTRC ENSG00000166167 CDS Human protein_coding chr10:103190137 chr10:103190141 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_107033 0 0 0 0 2 chromatin 0.500231643921093 0.500231643923643 0.1887145 5.09992048591812e-12 hm5C_site_60178 DeepMRMD:0.1887145;iRNA_m5C:5.09992048591812e-12 60179 chr11 113848577 113848577 1 + C T SKCM 113848576 + 113848556 113848596 41 ACTACAGGAAGGGTGTGCGCCCCGTGAGGGACTGGAGGAAG ACTACAGGAAGGGTGTGCGCCTCGTGAGGGACTGGAGGAAG < 41bp 0.502858864101879 0.759822591677157 0.22730204 0.2997414 prediction 0.513927455150556 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113848576 chr11:113848577 nonsynonymous SNV 0.910 5 22 hm5C_associated_SNPs_107034 0 0 0 0 2 Cytosol 0.500231643920216 0.500231643910179 0 0 hm5C_site_60179 DeepMRMD:0;iRNA_m5C:0 60180 chr9 129595457 129595457 1 + C G rs77338315 129595456 + 129595436 129595476 41 GGAGGGCGCCAGCGACAGCGCCGAGTTCCACTACACCCGGC GGAGGGCGCCAGCGACAGCGCGGAGTTCCACTACACCCGGC < 41bp 0.598443947970552 0.855401181989587 0.36143532 0.89945066 prediction 0.513914468038069 Functional Gain - ZBTB43 ENSG00000169155 CDS Human protein_coding chr9:129595456 chr9:129595457 synonymous SNV . 0 22 hm5C_associated_SNPs_107035 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643904229 0.79890132 0 hm5C_site_60180 DeepMRMD:0.79890132;iRNA_m5C:0 60181 chr12 118469037 118469037 1 + T A OV 118469033 + 118469013 118469053 41 AGAAGATCCAGCTGAGCTCCCTCATTGCTGCATTTCAAGTC AGAAGATCCAGCTGAGCTCCCTCAATGCTGCATTTCAAGTC < 41bp 0.429516965799767 0.75695058953926 0.27550954 0.8292642 prediction 0.513901179078521 Functional Gain - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118469033 chr12:118469037 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_107036 0 0 1 0 1 Ribosome 0.500231623130957 0.500231897637733 0.6585284 5.49013551731647e-07 hm5C_site_60181 DeepMRMD:0.6585284;iRNA_m5C:5.49013551731647e-07 60182 chr4 88036209 88036209 1 + C G BLCA 88036208 + 88036188 88036228 41 GTGGTGGTCCAGGAGGACAGCCGCAAAGACAGACTCCCATT GTGGTGGTCCAGGAGGACAGCGGCAAAGACAGACTCCCATT < 41bp 0.561353736837668 0.818302941312217 0.2056582 0.28069282 prediction 0.513898408949097 Functional Gain - AFF1 ENSG00000172493 CDS Human protein_coding chr4:88036208 chr4:88036209 nonsynonymous SNV 0.066 0 22 hm5C_associated_SNPs_107037 0 0 1 0 0 Nucleus 0.500231643956141 0.500231643921092 0 0 hm5C_site_60182 DeepMRMD:0;iRNA_m5C:0 60183 chr15 60297434 60297434 1 + C G OV 60297433 + 60297413 60297453 41 GCAGCTTCTGGGCGCTGCACCCAAGCTGCGGGGACATGTTC GCAGCTTCTGGGCGCTGCACCGAAGCTGCGGGGACATGTTC < 41bp 0.445634080247887 0.756946331164563 0.16129717 0.34428287 prediction 0.513892662329127 Functional Gain - FOXB1 ENSG00000171956 CDS Human protein_coding chr15:60297433 chr15:60297434 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_107038 0 0 0 0 0 exosome 0.500231642868746 0.500231644641199 0 3.54490747866976e-09 hm5C_site_60183 DeepMRMD:0;iRNA_m5C:3.54490747866976e-09 60184 chr12 124146048 124146048 1 + C G rs115048185 124146044 + 124146024 124146064 41 CTAAAAATAGAAAAATTAGCCATGCGAAGTAGCAGGTGCCT CTAAAAATAGAAAAATTAGCCATGGGAAGTAGCAGGTGCCT < 41bp 0.52237972010603 0.779318620003232 0.30851096 0.56747204 prediction 0.513877799794405 Functional Gain - GTF2H3 ENSG00000111358 UTR3 Human protein_coding chr12:124146044 chr12:124146048 . . 0 25 hm5C_associated_SNPs_107039 0 0 1 0 0 Cytosol 0.500231652138313 0.500221083882222 0.13494408 0 hm5C_site_60184 DeepMRMD:0.13494408;iRNA_m5C:0 60185 chrX 153416161 153416161 1 + C A UCEC 153416160 + 153416140 153416180 41 GCCCGAATTACCACATCGCTCCCAGATGGGTGTACCACCTC GCCCGAATTACCACATCGCTCACAGATGGGTGTACCACCTC < 41bp 0.504016071933573 0.760933510313306 0.06439325 0.054027766 prediction 0.513834876759465 Functional Gain - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153416160 chrX:153416161 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107040 0 0 0 0 1 unknown 0.500231643921502 0.500231643921807 0 6.10622663543836e-13 hm5C_site_60185 DeepMRMD:0;iRNA_m5C:6.10622663543836e-13 60186 chr16 67116228 67116228 1 + T A BLCA 67116224 + 67116204 67116244 41 AAATGGAGGTGAGAGTTTCACAGCTGCTGGCAGTAACTGGT AAATGGAGGTGAGAGTTTCACAGCAGCTGGCAGTAACTGGT < 41bp 0.599755830059854 0.856668416737664 0.66405386 0.59471166 prediction 0.51382517335562 Functional Gain - CBFB ENSG00000067955 CDS Human protein_coding chr16:67116224 chr16:67116228 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_107041 0 0 1 0 1 Ribosome 0.500231643103897 0.500231590722969 0 0 hm5C_site_60186 DeepMRMD:0;iRNA_m5C:0 60187 chr10 72500888 72500888 1 + C A STAD 72500884 + 72500864 72500904 41 TACTATGTGCACCAGAATGCCAAGCACAGCTGGGTGCCCTA TACTATGTGCACCAGAATGCCAAGAACAGCTGGGTGCCCTA < 41bp 0.340595670570235 0.756911026559845 0.116455704 0.27484262 prediction 0.513822053119691 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72500884 chr10:72500888 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_107042 0 0 0 0 1 chromatin 0.500231644472904 0.500231647411507 0 5.87720538902659e-09 hm5C_site_60187 DeepMRMD:0;iRNA_m5C:5.87720538902659e-09 60188 chr20 23350890 23350890 1 + C A UCEC 23350886 + 23350866 23350906 41 GCAGAAAATGGCCATTTCCACAACCTGGCTGCAGTCCAAGA GCAGAAAATGGCCATTTCCACAACATGGCTGCAGTCCAAGA < 41bp 0.35732124348643 0.756908007130083 0.24132568 0.19065496 prediction 0.513816014260167 Functional Gain - GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350886 chr20:23350890 nonsynonymous SNV 0.227 3 25 hm5C_associated_SNPs_107043 0 0 1 0 0 Cytosol 0.500231643987951 0.500235506029792 0 7.72408368265864e-06 hm5C_site_60188 DeepMRMD:0;iRNA_m5C:7.72408368265864e-06 60189 chr17 5280440 5280440 1 + T C rs3026101 5280438 + 5280418 5280458 41 GGGAGTTGGTATTAAAATACCGTGAGGACATCATTAATGTG GGGAGTTGGTATTAAAATACCGCGAGGACATCATTAATGTG < 41bp 0.556059847105171 0.812967510878362 0.11844146 0.15585873 prediction 0.513815327546382 Functional Gain - RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5280438 chr17:5280440 synonymous SNV . 0 23 hm5C_associated_SNPs_107044 0 1 1 0 1 Ribosome 0.500231641936614 0.500231642442236 0 1.01124397744456e-09 hm5C_site_60189 DeepMRMD:0;iRNA_m5C:1.01124397744456e-09 60190 chr1 205496967 205496967 1 + C T COAD 205496966 + 205496946 205496986 41 GGCCTCGCCTACTGTCACCACCGCAAGATCCTGCACCGGGA GGCCTCGCCTACTGTCACCACTGCAAGATCCTGCACCGGGA < 41bp 0.51151913193643 0.768422419397777 0.2925086 0.47861746 prediction 0.513806574922694 Functional Gain - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205496966 chr1:205496967 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_107045 0 0 1 0 2 nucleus 0.500231492858081 0.500231741421942 0 4.97127721876822e-07 hm5C_site_60190 DeepMRMD:0;iRNA_m5C:4.97127721876822e-07 60191 chr2 11284725 11284725 1 + T A rs6717010 11284721 + 11284701 11284741 41 TCTTACAGCTCTGAAGATCACAACTCTGACATGGGTGACAT TCTTACAGCTCTGAAGATCACAACACTGACATGGGTGACAT < 41bp 0.471178792915974 0.756902882713038 0.13372159 0.14325494 prediction 0.513805765426076 Functional Gain - C2orf50 ENSG00000150873 UTR3 Human protein_coding chr2:11284721 chr2:11284725 . . 0 25 hm5C_associated_SNPs_107046 0 0 0 0 0 Nucleus 0.500231651261297 0.500231741088474 0 1.79654354282022e-07 hm5C_site_60191 DeepMRMD:0;iRNA_m5C:1.79654354282022e-07 60192 chr11 12247770 12247770 1 + T A rs146600661 12247766 + 12247746 12247786 41 GCTGTGGAGAACAACCAGCTCGCATTTGATGTGGCCGAGCG GCTGTGGAGAACAACCAGCTCGCAATTGATGTGGCCGAGCG < 41bp 0.420701853150748 0.7568987163431 0.04367307 0.07686055 prediction 0.5137974326862 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12247766 chr11:12247770 nonsynonymous SNV 0.860 3 25 hm5C_associated_SNPs_107047 0 0 0 0 1 Ribosome 0.500231644446382 0.500231643921107 0 0 hm5C_site_60192 DeepMRMD:0;iRNA_m5C:0 60193 chr18 7231835 7231835 1 + C A LUSC 7231831 + 7231811 7231851 41 GAGGTCGCTTTGCCTGGTCACCAGCCTGGAGCTGCTGAACC GAGGTCGCTTTGCCTGGTCACCAGACTGGAGCTGCTGAACC < 41bp 0.37191861178196 0.756891442948508 0.06287092 0.21011403 prediction 0.513782885897016 Functional Gain - LRRC30 ENSG00000206422 CDS Human protein_coding chr18:7231831 chr18:7231835 nonsynonymous SNV 0.952 0 25 hm5C_associated_SNPs_107048 0 0 0 0 0 unknown 0.50023164391801 0.500231643923065 0 1.01105790406564e-11 hm5C_site_60193 DeepMRMD:0;iRNA_m5C:1.01105790406564e-11 60194 chr19 11032116 11032116 1 + C G SKCM 11032115 + 11032095 11032135 41 ATAATGAGCACGGGGATTGTCCAAGGTAACGAGGGTGGCGG ATAATGAGCACGGGGATTGTCGAAGGTAACGAGGGTGGCGG < 41bp 0.454432347706906 0.756885815843064 0.8534013 0.9202556 prediction 0.513771631686129 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11032115 chr19:11032116 nonsynonymous SNV 0.999 2 22 hm5C_associated_SNPs_107049 0 0 0 0 2 Ribosome 0.500231643900837 0.500231644453182 0.1337086 1.10469033920424e-09 hm5C_site_60194 DeepMRMD:0.1337086;iRNA_m5C:1.10469033920424e-09 60195 chr8 1496976 1496976 1 + C G rs140370936 1496972 + 1496952 1496992 41 CCACGGGCCCGACGCGCGGCCGCCCTACCTGCTGAGCCCCG CCACGGGCCCGACGCGCGGCCGCCGTACCTGCTGAGCCCCG < 41bp 0.480547208039426 0.756882340311999 0.057650477 0.8637585 prediction 0.513764680623999 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1496972 chr8:1496976 synonymous SNV . 0 25 hm5C_associated_SNPs_107050 0 0 0 0 0 nucleolus 0.50023164394651 0.500231643921093 0.727517 0 hm5C_site_60195 DeepMRMD:0.727517;iRNA_m5C:0 60196 chr5 97674918 97674918 1 + C G rs530536318 97674914 + 97674894 97674934 41 ACTCTGGTAACGGGGTCACCCACACTGCCCATCTACGAGTG ACTCTGGTAACGGGGTCACCCACAGTGCCCATCTACGAGTG < 41bp 0.510533841326892 0.767413477607723 0.06198266 0.16653731 prediction 0.513759272561661 Functional Gain - LINC01846;RGMB ENSG00000176183 ncRNA_exonic Human processed_pseudogene chr5:97674914 chr5:97674918 . . 0 25 hm5C_associated_SNPs_107051 0 0 0 0 0 unknown 0.500231650320637 0.500231633375882 0 0 hm5C_site_60196 DeepMRMD:0;iRNA_m5C:0 60197 chr8 81399318 81399318 1 + C G rs559378427 81399317 + 81399297 81399337 41 CGCCGGCGCCGCCGAGGAAGCCAAGGAGTTGCTGCTCCCCC CGCCGGCGCCGCCGAGGAAGCGAAGGAGTTGCTGCTCCCCC < 41bp 0.57953029992225 0.836408657202953 0.66297674 0.9215714 prediction 0.513756714561407 Functional Gain - ZBTB10 ENSG00000205189 CDS Human protein_coding chr8:81399317 chr8:81399318 synonymous SNV . 0 22 hm5C_associated_SNPs_107052 0 0 1 0 0 Endoplasmic reticulum 0.500231644025173 0.500231901357002 0.51718932 5.14663659689774e-07 hm5C_site_60197 DeepMRMD:0.51718932;iRNA_m5C:5.14663659689774e-07 60198 chr1 236711387 236711387 1 + T A UCEC 236711383 + 236711363 236711403 41 CACAGCCTGGAGTACAAACACAGATTTAAAGAGCTCAGCAG CACAGCCTGGAGTACAAACACAGAATTAAAGAGCTCAGCAG < 41bp 0.452899697922187 0.756877291544017 0.29901528 0.78695273 prediction 0.513754583088035 Functional Gain - LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236711383 chr1:236711387 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_107053 0 0 1 1 1 Cytosol 0.50023164342194 0.500231660280841 0.57390546 3.37178007736583e-08 hm5C_site_60198 DeepMRMD:0.57390546;iRNA_m5C:3.37178007736583e-08 60199 chr15 59911580 59911580 1 + C G HNSC 59911576 + 59911556 59911596 41 CGATAAGGGTGCTCCTTATGCTCCCTGCTCTGGAATCCACC CGATAAGGGTGCTCCTTATGCTCCGTGCTCTGGAATCCACC < 41bp 0.567421841630932 0.824297209907731 0.15768477 0.20447412 prediction 0.513750736553597 Functional Gain - GCNT3 ENSG00000140297 CDS Human protein_coding chr15:59911576 chr15:59911580 synonymous SNV . 0 25 hm5C_associated_SNPs_107054 0 0 1 0 0 exosome 0.50023164341639 0.500230678399525 0 0 hm5C_site_60199 DeepMRMD:0;iRNA_m5C:0 60200 chr3 186358315 186358315 1 + C A rs76555921 186358311 + 186358291 186358331 41 GTGCTGCGGAGCAATGTCTCCACCCCAGCTGGCCCTCAACC GTGCTGCGGAGCAATGTCTCCACCACAGCTGGCCCTCAACC < 41bp 0.343439321298864 0.756872628521043 0.170977 0.09132019 prediction 0.513745257042085 Functional Gain - FETUB ENSG00000090512 CDS Human protein_coding chr3:186358311 chr3:186358315 synonymous SNV . 0 25 hm5C_associated_SNPs_107055 0 0 0 0 0 exosome 0.500231643941418 0.50023273169707 0 2.17551130488047e-06 hm5C_site_60200 DeepMRMD:0;iRNA_m5C:2.17551130488047e-06 60201 chr18 56892886 56892886 1 + C T SKCM 56892885 + 56892865 56892905 41 GAAACCACCAGCCACCTCAACCCAAGGCCCTGGGCAATCAG GAAACCACCAGCCACCTCAACTCAAGGCCCTGGGCAATCAG < 41bp 0.507278492680631 0.764150712052462 0.24103358 0.435941 prediction 0.513744438743662 Functional Gain - GRP ENSG00000134443 CDS Human protein_coding chr18:56892885 chr18:56892886 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_107056 0 0 0 0 2 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_60201 DeepMRMD:0;iRNA_m5C:0 60202 chr2 74757336 74757336 1 + C G LIHC 74757335 + 74757315 74757355 41 TGTCTGTTGGGGTCACTGAACCCCGAGCATGCCTGACGTCT TGTCTGTTGGGGTCACTGAACGCCGAGCATGCCTGACGTCT < 41bp 0.527805777425795 0.78467200822121 0.3360265 0.33851713 prediction 0.513732461590829 Functional Gain - HTRA2 ENSG00000115317 CDS Human protein_coding chr2:74757335 chr2:74757336 nonsynonymous SNV 0.057 0 22 hm5C_associated_SNPs_107057 0 0 1 0 0 exosome 0.500231633507679 0.500231643370921 0 1.97264844459255e-08 hm5C_site_60202 DeepMRMD:0;iRNA_m5C:1.97264844459255e-08 60203 chrX 133594186 133594186 1 + C G rs193054558 133594182 + 133594162 133594202 41 GGGGCGGGCAGAGGGCGGGGCCTGCTTCTCCTCAGCTTCAG GGGGCGGGCAGAGGGCGGGGCCTGGTTCTCCTCAGCTTCAG < 41bp 0.488242115004005 0.756865845467907 0.533002 0.44684812 prediction 0.513731690935813 Functional Gain - HPRT1 ENSG00000165704 UTR5 Human protein_coding chrX:133594182 chrX:133594186 . . 0 25 hm5C_associated_SNPs_107058 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_60203 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 60204 chr11 55944170 55944170 1 + T G LUSC 55944167 + 55944147 55944187 41 AGATCATGCTGAACTAAAAGCTGTGCTTTTTGTGGTGTTCC AGATCATGCTGAACTAAAAGCTGGGCTTTTTGTGGTGTTCC < 41bp 0.379468401996594 0.756855655880623 0.28601253 0.42834395 prediction 0.513711311761246 Functional Gain - OR5J2 ENSG00000174957 CDS Human protein_coding chr11:55944167 chr11:55944170 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_107059 0 0 0 0 0 unknown 0.500231643932378 0.500231643921092 0 0 hm5C_site_60204 DeepMRMD:0;iRNA_m5C:0 60205 chr11 33053107 33053107 1 + C A rs966191 33053103 + 33053083 33053123 41 ACCTCTGTTAAATCACTTATCTGACGTTCATAATGGAATTG ACCTCTGTTAAATCACTTATCTGAAGTTCATAATGGAATTG < 41bp 0.353810653102691 0.756850463815624 0.2891074 0.30376482 prediction 0.513700927631248 Functional Gain - DEPDC7 ENSG00000121690 CDS Human protein_coding chr11:33053103 chr11:33053107 nonsynonymous SNV 0.152 1 25 hm5C_associated_SNPs_107060 0 0 0 0 1 Cytosol 0.500231693423109 0.500231324987444 0 0 hm5C_site_60205 DeepMRMD:0;iRNA_m5C:0 60206 chr1 161931049 161931049 1 + C G rs41271953 161931048 + 161931028 161931068 41 TAGCAGGGCCGGCAGCTCTGCCACAGAGCTAGGGGTGCCTG TAGCAGGGCCGGCAGCTCTGCGACAGAGCTAGGGGTGCCTG < 41bp 0.510982188387271 0.767827603782207 0.49332568 0.47338238 prediction 0.513690830789873 Functional Gain - ATF6 ENSG00000118217 UTR3 Human protein_coding chr1:161931048 chr1:161931049 . . 0 22 hm5C_associated_SNPs_107061 0 0 1 0 0 Endoplasmic reticulum 0.500232077401804 0.500231643846873 0 0 hm5C_site_60206 DeepMRMD:0;iRNA_m5C:0 60207 chr20 36954734 36954734 1 + C A LUAD 36954730 + 36954710 36954750 41 CAGCCTCCACCCCGCCACACCTGTCTGTGCAGCCCACCGGC CAGCCTCCACCCCGCCACACCTGTATGTGCAGCCCACCGGC < 41bp 0.339688716704176 0.756843254531697 0.07193464 0.115638375 prediction 0.513686509063394 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36954730 chr20:36954734 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_107062 0 0 0 0 1 Nucleus 0.500231646431204 0.500231643920941 0 0 hm5C_site_60207 DeepMRMD:0;iRNA_m5C:0 60208 chrX 23353202 23353202 1 + T G LGG 23353199 + 23353179 23353219 41 GCCAAGATCGAGCGCAACCTCGTTAACAGCCTCTTCCCGGT GCCAAGATCGAGCGCAACCTCGTGAACAGCCTCTTCCCGGT < 41bp 0.653562955624763 0.910403056231464 0.0630115 0.29540473 prediction 0.513680201213401 Functional Gain - PTCHD1 ENSG00000165186 CDS Human protein_coding chrX:23353199 chrX:23353202 synonymous SNV . 0 24 hm5C_associated_SNPs_107063 0 0 0 0 0 exosome 0.500231143405044 0.500234998250208 0 7.70969032859448e-06 hm5C_site_60208 DeepMRMD:0;iRNA_m5C:7.70969032859448e-06 60209 chr7 29689158 29689158 1 + C G rs17136535 29689157 + 29689137 29689177 41 GAAGCGTGGAGGCGGGGGTGCCGCGTGCACTGGGGAGCACG GAAGCGTGGAGGCGGGGGTGCGGCGTGCACTGGGGAGCACG < 41bp 0.555038192483133 0.811873402181116 0.8933386 0.9018972 prediction 0.513670419395966 Functional Gain - LOC646762 ENSG00000225264 ncRNA_intronic Human transcribed_processed_pseudogene chr7:29689157 chr7:29689158 . . 0 22 hm5C_associated_SNPs_107064 0 0 0 0 0 unknown 0.500231643913392 0.500231643921353 0.0171171999999999 1.59225965745691e-11 hm5C_site_60209 DeepMRMD:0.0171171999999999;iRNA_m5C:1.59225965745691e-11 60210 chr8 43046629 43046629 1 + C G BRCA 43046625 + 43046605 43046645 41 GCCCCCACTCAGGAGAGGAGCTGCCTTTCTCTTCGAGACAT GCCCCCACTCAGGAGAGGAGCTGCGTTTCTCTTCGAGACAT < 41bp 0.463909356678209 0.756832744372547 0.09337747 0.15813756 prediction 0.513665488745094 Functional Gain - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43046625 chr8:43046629 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_107065 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.50023164392108 0 0 hm5C_site_60210 DeepMRMD:0;iRNA_m5C:0 60211 chr1 196977770 196977770 1 + C A COAD 196977766 + 196977746 196977786 41 TGATATCATCACCACCATTTCGAGCAATCTGTCAGGAAGGG TGATATCATCACCACCATTTCGAGAAATCTGTCAGGAAGGG < 41bp 0.373164781673542 0.756822955823211 0.17243111 0.3030051 prediction 0.513645911646423 Functional Gain - CFHR5 ENSG00000134389 CDS Human protein_coding chr1:196977766 chr1:196977770 nonsynonymous SNV 0.002 2 25 hm5C_associated_SNPs_107066 0 0 0 0 0 exosome 0.500231452102426 0.500231643887129 0 3.83569406237072e-07 hm5C_site_60211 DeepMRMD:0;iRNA_m5C:3.83569406237072e-07 60212 chr11 56949546 56949546 1 + C A LUSC 56949542 + 56949522 56949562 41 CCTGGCCCGGGCCACCCCACCCAGCAATGCTGCTGATCTCC CCTGGCCCGGGCCACCCCACCCAGAAATGCTGCTGATCTCC < 41bp 0.356187053355562 0.756820403389858 0.8727629 0.91332203 prediction 0.513640806779716 Functional Gain - LRRC55 ENSG00000183908 CDS Human protein_coding chr11:56949542 chr11:56949546 nonsynonymous SNV 0.035 0 25 hm5C_associated_SNPs_107067 0 0 0 0 0 exosome 0.500231644228975 0.500231643998935 0.08111826 0 hm5C_site_60212 DeepMRMD:0.08111826;iRNA_m5C:0 60213 chr16 70506907 70506907 1 + T C rs7192865 70506905 + 70506885 70506925 41 GAGCCTGGGACCTGTGGGACCCTGAGACGCTGCCCGCAGAG GAGCCTGGGACCTGTGGGACCCCGAGACGCTGCCCGCAGAG < 41bp 0.484811580058682 0.756819041491814 0.3683725 0.30959874 prediction 0.513638082983628 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70506905 chr16:70506907 synonymous SNV . 0 23 hm5C_associated_SNPs_107068 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921088 0 0 hm5C_site_60213 DeepMRMD:0;iRNA_m5C:0 60214 chr3 121573611 121573611 1 + T C UCEC 121573609 + 121573589 121573629 41 AATGCATTTTGATTATTAACCATGATACTGGAGAATGTCGG AATGCATTTTGATTATTAACCACGATACTGGAGAATGTCGG < 41bp 0.527038431712011 0.783847435697029 0.13553205 0.1351139 prediction 0.513618007970035 Functional Gain - EAF2 ENSG00000145088 CDS Human protein_coding chr3:121573609 chr3:121573611 synonymous SNV . 0 23 hm5C_associated_SNPs_107069 0 0 0 0 1 exosome 0.500229591246589 0.500231030903341 0 2.87931350428927e-06 hm5C_site_60214 DeepMRMD:0;iRNA_m5C:2.87931350428927e-06 60215 chr17 17942970 17942970 1 + C A rs545188753 17942966 + 17942946 17942986 41 CCCCGCCACCCTCCTCGGCTCCCGCGCGGCGGCGGCGGTTC CCCCGCCACCCTCCTCGGCTCCCGAGCGGCGGCGGCGGTTC < 41bp 0.651186505355136 0.907985036861192 0.16766205 0.3438546 prediction 0.513597063012114 Functional Gain - GID4 ENSG00000141034 CDS Human protein_coding chr17:17942966 chr17:17942970 synonymous SNV . 0 25 hm5C_associated_SNPs_107070 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_60215 DeepMRMD:0;iRNA_m5C:0 60216 chr11 1651250 1651250 1 + C G LGG 1651249 + 1651229 1651269 41 GGGCTGTGGGGGATGTGGCTCCGGCTGCTGTGTGCCTGTCT GGGCTGTGGGGGATGTGGCTCGGGCTGCTGTGTGCCTGTCT < 41bp 0.58871504694665 0.845505727203223 0.83285046 0.926371 prediction 0.513581360513146 Functional Gain - KRTAP5-5 ENSG00000185940 CDS Human protein_coding chr11:1651249 chr11:1651250 synonymous SNV . 0 22 hm5C_associated_SNPs_107071 0 0 0 0 0 unknown 0.500231643921594 0.500231643921092 0.18704108 0 hm5C_site_60216 DeepMRMD:0.18704108;iRNA_m5C:0 60217 chr20 30556401 30556401 1 + C A UCEC 30556400 + 30556380 30556420 41 CGGCGGAGCCGCCATCAGCACCAAGGACAGCGCCGGCGCCT CGGCGGAGCCGCCATCAGCACAAAGGACAGCGCCGGCGCCT < 41bp 0.501414494190208 0.75820348210405 0.39535755 0.46266276 prediction 0.513577975827684 Functional Gain - XKR7 ENSG00000260903 CDS Human protein_coding chr20:30556400 chr20:30556401 synonymous SNV . 0 22 hm5C_associated_SNPs_107072 0 0 0 0 0 exosome 0.500231643929415 0.500231643923977 0 0 hm5C_site_60217 DeepMRMD:0;iRNA_m5C:0 60218 chr18 72593032 72593032 1 + C G rs34940122 72593028 + 72593008 72593048 41 GTGTGACCTCTGCGGCTTTGCCGGCGGGACCCGCCACGCCC GTGTGACCTCTGCGGCTTTGCCGGGGGGACCCGCCACGCCC < 41bp 0.545735207229435 0.802519454547979 0.913412 0.9538634 prediction 0.513568494637088 Functional Gain - ZNF407 ENSG00000215421 CDS Human protein_coding chr18:72593028 chr18:72593032 synonymous SNV . 0 25 hm5C_associated_SNPs_107073 1 0 0 0 2 Cytosol 0.500231646943529 0.500231643921896 0.0809028000000001 0 hm5C_site_60218 DeepMRMD:0.0809028000000001;iRNA_m5C:0 not specified not specified 60219 chr17 48755222 48755222 1 + C A rs34620384 48755221 + 48755201 48755241 41 AGTGTCATCCGGGCCTACAACCGCAGCCGGGATTTTGAGAT AGTGTCATCCGGGCCTACAACAGCAGCCGGGATTTTGAGAT < 41bp 0.504610792910426 0.76139239209164 0.91190696 0.83743674 prediction 0.513563198362428 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48755221 chr17:48755222 nonsynonymous SNV 0.030 4 22 hm5C_associated_SNPs_107074 0 0 1 0 1 Endoplasmic reticulum 0.500231643921096 0.500231643921093 0 0 hm5C_site_60219 DeepMRMD:0;iRNA_m5C:0 60220 chr1 212209261 212209261 1 + C G PAAD 212209260 + 212209240 212209280 41 TCAATTCGGTGCTCCGCCAGCCCCAGCTTGGCGTCCTGAGA TCAATTCGGTGCTCCGCCAGCGCCAGCTTGGCGTCCTGAGA < 41bp 0.581082792630894 0.837860273283843 0.1221399 0.24483216 prediction 0.513554961305899 Functional Gain - DTL ENSG00000143476 CDS Human protein_coding chr1:212209260 chr1:212209261 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107075 0 0 1 0 1 Cytosol 0.500231646107631 0.500231643921093 0 0 hm5C_site_60220 DeepMRMD:0;iRNA_m5C:0 60221 chr19 51671510 51671510 1 + T G BLCA 51671508 + 51671488 51671528 41 GGGCCCCAGGACCCTCCACTCCTCAGTGCTCACGATCATCC GGGCCCCAGGACCCTCCACTCCGCAGTGCTCACGATCATCC < 41bp 0.423481979473542 0.7567760254087 0.17053428 0.48798376 prediction 0.513552050817401 Functional Gain - SIGLEC17P ENSG00000171101 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:51671508 chr19:51671510 . . 0 23 hm5C_associated_SNPs_107076 0 0 0 0 0 unknown 0.500231643921399 0.500306285235131 0 0.000149282627464054 hm5C_site_60221 DeepMRMD:0;iRNA_m5C:0.000149282627464054 60222 chr6 43251880 43251880 1 + C G rs45564136 43251876 + 43251856 43251896 41 CACGGGCTCTGAGGAGGACACGCCCGCCTCTGAGCCGGCAG CACGGGCTCTGAGGAGGACACGCCGGCCTCTGAGCCGGCAG < 41bp 0.546097394402685 0.802872732802587 0.08945623 0.343777 prediction 0.513550676799803 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43251876 chr6:43251880 synonymous SNV . 0 25 hm5C_associated_SNPs_107077 0 0 0 0 0 exosome 0.500231643921092 0.500231643924458 0 6.73261446593187e-12 hm5C_site_60222 DeepMRMD:0;iRNA_m5C:6.73261446593187e-12 60223 chr7 128494176 128494176 1 + C G LUAD 128494175 + 128494155 128494195 41 GGTGCGGGTGGAGGAGTCCACCCAGGTCGGCGGGGACCCCT GGTGCGGGTGGAGGAGTCCACGCAGGTCGGCGGGGACCCCT < 41bp 0.460397899228144 0.756772859063563 0.27803046 0.562396 prediction 0.513545718127125 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128494175 chr7:128494176 synonymous SNV . 0 22 hm5C_associated_SNPs_107078 0 0 0 0 0 chromatin 0.500231643921092 0.500231643921095 0.124792 5.55111512312578e-15 hm5C_site_60223 DeepMRMD:0.124792;iRNA_m5C:5.55111512312578e-15 60224 chr15 66618704 66618704 1 + T G OV 66618701 + 66618681 66618721 41 AAGGCTTCTTCATAGATACACGGTATTCCTCTTTTGAGGGG AAGGCTTCTTCATAGATACACGGGATTCCTCTTTTGAGGGG < 41bp 0.373363584081222 0.756771236134337 0.23189431 0.66680825 prediction 0.513542472268674 Functional Gain - DIS3L ENSG00000166938 splicing Human protein_coding chr15:66618701 chr15:66618704 . 0.946 0 24 hm5C_associated_SNPs_107079 0 0 0 0 0 chromatin 0.500231643921093 0.500231643921091 0.3336165 0 hm5C_site_60224 DeepMRMD:0.3336165;iRNA_m5C:0 60225 chr15 83781599 83781599 1 + T G rs79470022 83781596 + 83781576 83781616 41 CCTCATCCTGTTCCTGGTAGCACTGCTGGCTCGTGTCCTCG CCTCATCCTGTTCCTGGTAGCACGGCTGGCTCGTGTCCTCG < 41bp 0.656905412085869 0.913676159678357 0.059400946 0.2450878 prediction 0.513541495184976 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83781596 chr15:83781599 nonsynonymous SNV 0.867 2 24 hm5C_associated_SNPs_107080 0 0 0 3 2 chromatin 0.50023164425387 0.500231766301697 0 2.44095655244081e-07 hm5C_site_60225 DeepMRMD:0;iRNA_m5C:2.44095655244081e-07 60226 chr14 45475275 45475275 1 + C T SKCM 45475274 + 45475254 45475294 41 CTTGGTGAGATCGCCATCTTCCCGACGAGGTCTAAATGGGA CTTGGTGAGATCGCCATCTTCTCGACGAGGTCTAAATGGGA < 41bp 0.523875795850987 0.780646509409026 0.085133255 0.5044362 prediction 0.513541427116077 Functional Gain - TOGARAM1 ENSG00000198718 CDS Human protein_coding chr14:45475274 chr14:45475275 synonymous SNV . 0 22 hm5C_associated_SNPs_107081 0 0 0 0 1 unknown 0.500231644746888 0.500231824535012 0.0088724 3.59576249664428e-07 hm5C_site_60226 DeepMRMD:0.0088724;iRNA_m5C:3.59576249664428e-07 Carotid atherosclerosis in HIV infection 60227 chr7 75508332 75508332 1 + C G rs550617756 75508331 + 75508311 75508351 41 GCTGTTGCCAAGGGAAACTGCCGCGAGGAGGCGGAAGGAGC GCTGTTGCCAAGGGAAACTGCGGCGAGGAGGCGGAAGGAGC < 41bp 0.579702455986442 0.836463604738341 0.36726952 0.7883276 prediction 0.513522297503799 Functional Gain - RHBDD2 ENSG00000005486 UTR5 Human protein_coding chr7:75508331 chr7:75508332 . . 0 22 hm5C_associated_SNPs_107082 0 0 0 0 0 Endoplasmic reticulum 0.500231694318468 0.500231643922161 0.5766552 0 hm5C_site_60227 DeepMRMD:0.5766552;iRNA_m5C:0 60228 chr19 55048266 55048266 1 + C A LUAD 55048262 + 55048242 55048282 41 AGAGACACAGGGAAGCATTCCAGGCCAACTTTTCTGTGGGC AGAGACACAGGGAAGCATTCCAGGACAACTTTTCTGTGGGC < 41bp 0.65369495128692 0.910447119155458 0.86913216 0.89532816 prediction 0.513504335737077 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55048262 chr19:55048266 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_107083 0 0 0 0 0 Nucleus 0.500146532766329 0.500233214218199 0.052392 0.000173362903739926 hm5C_site_60228 DeepMRMD:0.052392;iRNA_m5C:0.000173362903739926 60229 chr10 74035068 74035068 1 + T A rs541358689 74035064 + 74035044 74035084 41 GGTTGGAAAACTGAGGCAGCCACCTAAGGTGGAGGTGGGGG GGTTGGAAAACTGAGGCAGCCACCAAAGGTGGAGGTGGGGG < 41bp 0.584420190870189 0.841169595009829 0.34342027 0.15817827 prediction 0.513498808279279 Functional Gain - DDIT4 ENSG00000269926 ncRNA_exonic Human antisense chr10:74035064 chr10:74035068 . . 0 25 hm5C_associated_SNPs_107084 0 0 1 0 0 Ribosome 0.500231643798643 0.500231641797145 0 0 hm5C_site_60229 DeepMRMD:0;iRNA_m5C:0 60230 chr15 99796162 99796162 1 + C A BLCA 99796158 + 99796138 99796178 41 CGTGCCTGATGGGATATATTCAGTCATGGCGTCCGAACTTT CGTGCCTGATGGGATATATTCAGTAATGGCGTCCGAACTTT < 41bp 0.482229972851061 0.756744128829001 0.24312639 0.26613826 prediction 0.513488257658002 Functional Gain - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99796158 chr15:99796162 stopgain 0.997 0 25 hm5C_associated_SNPs_107085 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_60230 DeepMRMD:0;iRNA_m5C:0 60231 chrX 102943097 102943097 1 + C A rs185804384 102943093 + 102943073 102943113 41 GATTCTGGGATTTTGTTTCCCTCCCCCCTCCCCTTTCTGAT GATTCTGGGATTTTGTTTCCCTCCACCCTCCCCTTTCTGAT < 41bp 0.350669667882381 0.756719871655758 0.035992146 0.91531765 prediction 0.513439743311515 Functional Gain - MORF4L2-AS1 ENSG00000231154 ncRNA_exonic Human antisense chrX:102943093 chrX:102943097 . . 0 25 hm5C_associated_SNPs_107086 0 0 0 0 0 unknown 0.500231643921098 0.500231643921092 0.8306353 0 hm5C_site_60231 DeepMRMD:0.8306353;iRNA_m5C:0 60232 chr6 27513542 27513542 1 + C G rs142077479 27513538 + 27513518 27513558 41 TCCCCGCGCAGGTTCGAATCCTGCCGACTACGGTTTTACCA TCCCCGCGCAGGTTCGAATCCTGCGGACTACGGTTTTACCA < 41bp 0.487639873960146 0.756716696662043 0.5217362 0.46367502 prediction 0.513433393324086 Functional Gain - ZNF184;LINC01012 ENSG00000218347;ENSG00000219738 intergenic Human other chr6:27513538 chr6:27513542 . . 0 25 hm5C_associated_SNPs_107087 0 0 1 0 0 unknown 0.500231643947734 0.500231643928375 0 0 hm5C_site_60232 DeepMRMD:0;iRNA_m5C:0 60233 chr17 73102104 73102104 1 + T A SKCM 73102100 + 73102080 73102120 41 GGTACTGCAGGCCAAGCAAACGGCTCTGGGCTGGAATAGCC GGTACTGCAGGCCAAGCAAACGGCACTGGGCTGGAATAGCC < 41bp 0.58882331258108 0.845539599689496 0.89060235 0.90591127 prediction 0.513432574216832 Functional Gain - SLC16A5 ENSG00000170190 CDS Human protein_coding chr17:73102100 chr17:73102104 synonymous SNV . 0 25 hm5C_associated_SNPs_107088 0 0 1 0 0 Cytosol 0.500231643921093 0.500231643921092 0.0306178400000001 0 hm5C_site_60233 DeepMRMD:0.0306178400000001;iRNA_m5C:0 60234 chr20 45355517 45355517 1 + C T COAD 45355516 + 45355496 45355536 41 ACCCTAGTGACCTGGCTTGTCCTCAGCGAGATCTACCCTGT ACCCTAGTGACCTGGCTTGTCTTCAGCGAGATCTACCCTGT < 41bp 0.495723476290282 0.756713033070369 0.05787313 0.09938902 prediction 0.513426066140737 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355516 chr20:45355517 nonsynonymous SNV 0.955 5 22 hm5C_associated_SNPs_107089 0 0 0 0 1 Nucleus 0.500231643921226 0.500231643921099 0 0 hm5C_site_60234 DeepMRMD:0;iRNA_m5C:0 60235 chr6 159173058 159173058 1 + T C UCEC 159173056 + 159173036 159173076 41 GACCCGACCTTTCAGGAGACCTTGAAGGTACTTGCTGGACA GACCCGACCTTTCAGGAGACCTCGAAGGTACTTGCTGGACA < 41bp 0.564263640664122 0.820971755745183 0.041455388 0.3866351 prediction 0.513416230162121 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159173056 chr6:159173058 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_107090 0 0 0 0 2 exosome 0.500231643921955 0.500231643918187 0 0 hm5C_site_60235 DeepMRMD:0;iRNA_m5C:0 60236 chr9 125315992 125315992 1 + C G SKCM 125315991 + 125315971 125316011 41 ATGCACACACTGTTGCTGACCCGCGTGGCTTTCTGTGCCCA ATGCACACACTGTTGCTGACCGGCGTGGCTTTCTGTGCCCA < 41bp 0.59200434266837 0.848704406711084 0.11802098 0.8178265 prediction 0.513400128085428 Functional Gain - OR1N2 ENSG00000171501 CDS Human protein_coding chr9:125315991 chr9:125315992 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_107091 0 0 0 0 0 unknown 0.500231643868899 0.500231673100918 0.635653 5.84640384992952e-08 hm5C_site_60236 DeepMRMD:0.635653;iRNA_m5C:5.84640384992952e-08 60237 chr20 35060146 35060146 1 + C A LUSC 35060142 + 35060122 35060162 41 TGAAAGGCCTCGGTGACAGCCGCCCCCGCCACCTCTCCGAC TGAAAGGCCTCGGTGACAGCCGCCACCGCCACCTCTCCGAC < 41bp 0.333035528367605 0.756697392074699 0.18238884 0.22654098 prediction 0.513394784149398 Functional Gain - DLGAP4 ENSG00000080845 CDS Human protein_coding chr20:35060142 chr20:35060146 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_107092 0 0 0 0 1 Cytosol 0.500233684865262 0.500239038278937 0 1.07068273496047e-05 hm5C_site_60237 DeepMRMD:0;iRNA_m5C:1.07068273496047e-05 60238 chr16 74339290 74339290 1 + C A UCEC 74339286 + 74339266 74339306 41 AAGCTTCTGGATATCAGGAGCTACCTGGAAAAAGTCGCCAC AAGCTTCTGGATATCAGGAGCTACATGGAAAAAGTCGCCAC < 41bp 0.342476608409422 0.756696571016819 0.056666702 0.08979955 prediction 0.513393142033638 Functional Gain - PSMD7 ENSG00000103035 CDS Human protein_coding chr16:74339286 chr16:74339290 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_107093 0 0 1 0 0 Ribosome 0.5002316439126 0.500231643921054 0 1.6909140754251e-11 hm5C_site_60238 DeepMRMD:0;iRNA_m5C:1.6909140754251e-11 60239 chr10 106118238 106118238 1 + T C CHOL 106118236 + 106118216 106118256 41 TATGAGAGGCTTCATGCTGTCATGAAAAAGTCTTATGACAA TATGAGAGGCTTCATGCTGTCACGAAAAAGTCTTATGACAA < 41bp 0.548639446249207 0.805331253826136 0.25658077 0.20363605 prediction 0.513383615153859 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106118236 chr10:106118238 nonsynonymous SNV 0.995 2 23 hm5C_associated_SNPs_107094 0 0 0 0 0 nucleolus 0.500231637084572 0.500231621747331 0 0 hm5C_site_60239 DeepMRMD:0;iRNA_m5C:0 60240 chr16 88926026 88926026 1 + C A rs3826063 88926025 + 88926005 88926045 41 GGCCCACAGAGGGCCCTCCACCGGCAGTCCCTGTGTTACGA GGCCCACAGAGGGCCCTCCACAGGCAGTCCCTGTGTTACGA < 41bp 0.499713346211959 0.75668787343682 0.27966014 0.21672595 prediction 0.513375746873639 Functional Gain - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926025 chr16:88926026 synonymous SNV . 0 22 hm5C_associated_SNPs_107095 0 0 0 0 1 Ribosome 0.500231640068163 0.50023162014183 0 0 hm5C_site_60240 DeepMRMD:0;iRNA_m5C:0 60241 chr12 113725993 113725993 1 + C T UCEC 113725992 + 113725972 113726012 41 TTTAAGTTGAAGGAGCGCTACCGCAACGTGCTGGACACCAT TTTAAGTTGAAGGAGCGCTACTGCAACGTGCTGGACACCAT < 41bp 0.505900253294093 0.76258234213608 0.24227455 0.21385169 prediction 0.513364177683974 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113725992 chr12:113725993 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_107096 0 0 1 0 2 chromatin 0.500231643913497 0.500231618469847 0 0 hm5C_site_60241 DeepMRMD:0;iRNA_m5C:0 60242 chr1 180217588 180217588 1 + T C UCEC 180217586 + 180217566 180217606 41 GTCTACTGCAAGGAGGACTTCTTCAAGTAAGTCAGAACGGT GTCTACTGCAAGGAGGACTTCTCCAAGTAAGTCAGAACGGT < 41bp 0.466629690497346 0.756681701820331 0.31506518 0.96368194 prediction 0.513363403640662 Functional Gain - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180217586 chr1:180217588 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107097 0 0 0 0 1 chromatin 0.500231643920178 0.500231643921113 0.92736388 1.87028170728354e-12 hm5C_site_60242 DeepMRMD:0.92736388;iRNA_m5C:1.87028170728354e-12 60243 chr12 53666575 53666575 1 + T G PRAD 53666572 + 53666552 53666592 41 TATGCCGAGGCCTGTGCCATCTCTGAGCCGCTCTGTCAGCA TATGCCGAGGCCTGTGCCATCTCGGAGCCGCTCTGTCAGCA < 41bp 0.368620394422678 0.756674924414146 0.14876008 0.20948991 prediction 0.513349848828292 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53666572 chr12:53666575 synonymous SNV . 0 24 hm5C_associated_SNPs_107098 0 0 1 0 2 Nucleus 0.500231588564566 0.500231643921293 0 1.10713452849964e-07 hm5C_site_60243 DeepMRMD:0;iRNA_m5C:1.10713452849964e-07 60244 chr7 143747691 143747691 1 + C A LUSC 143747687 + 143747667 143747707 41 TGTACTTCTTTCTCTCACACCTGGCCATCATTGATATTTCG TGTACTTCTTTCTCTCACACCTGGACATCATTGATATTTCG < 41bp 0.36842675385534 0.756673872625431 0.054060906 0.06369448 prediction 0.513347745250862 Functional Gain - OR2A5 ENSG00000221836 CDS Human protein_coding chr7:143747687 chr7:143747691 nonsynonymous SNV 0.902 1 25 hm5C_associated_SNPs_107099 0 0 0 0 0 unknown 0.500236857491992 0.500233847365263 0 0 hm5C_site_60244 DeepMRMD:0;iRNA_m5C:0 60245 chr5 180338425 180338425 1 + C A COAD 180338421 + 180338401 180338441 41 TGTCAGTCCTCGGGCTGGTTCCCCCGGCCCACAGCGAAGTG TGTCAGTCCTCGGGCTGGTTCCCCAGGCCCACAGCGAAGTG < 41bp 0.329894426657152 0.75666710373462 0.14628261 0.23877975 prediction 0.51333420746924 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180338421 chr5:180338425 synonymous SNV . 0 25 hm5C_associated_SNPs_107100 0 0 0 0 1 chromatin 0.500231643921092 0.500231643907382 0 0 hm5C_site_60245 DeepMRMD:0;iRNA_m5C:0 60246 chr11 55563358 55563358 1 + T A LUAD 55563354 + 55563334 55563374 41 GCAGTACTTCCTGTCCTGCACTGCTGTGGTGACAGAGTCTT GCAGTACTTCCTGTCCTGCACTGCAGTGGTGACAGAGTCTT < 41bp 0.599995001000729 0.856657570855008 0.030469388 0.053202033 prediction 0.513325139708558 Functional Gain - OR5D14 ENSG00000186113 CDS Human protein_coding chr11:55563354 chr11:55563358 synonymous SNV . 0 25 hm5C_associated_SNPs_107101 0 0 0 0 0 unknown 0.50023164473776 0.500231657712846 0 2.59501717891908e-08 hm5C_site_60246 DeepMRMD:0;iRNA_m5C:2.59501717891908e-08 60247 chr17 21205553 21205553 1 + T C rs529768181 21205551 + 21205531 21205571 41 TGACAATTCCAGAGGACATCCTTGGGGAGATTGCTGTGTCT TGACAATTCCAGAGGACATCCTCGGGGAGATTGCTGTGTCT < 41bp 0.531863829317212 0.788521834070159 0.098139375 0.052021295 prediction 0.513316009505894 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21205551 chr17:21205553 synonymous SNV . 0 23 hm5C_associated_SNPs_107102 0 0 1 0 2 Ribosome 0.500231644019726 0.500231643921094 0 0 hm5C_site_60247 DeepMRMD:0;iRNA_m5C:0 60248 chr19 39898406 39898406 1 + C G CESC 39898402 + 39898382 39898422 41 GAGCCTCCTGTCGCTGAGCCCTGACGTGCCCGTGCCATCCG GAGCCTCCTGTCGCTGAGCCCTGAGGTGCCCGTGCCATCCG < 41bp 0.568264566272889 0.824922025098349 0.044565916 0.2312856 prediction 0.51331491765092 Functional Gain - ZFP36 ENSG00000128016 CDS Human protein_coding chr19:39898402 chr19:39898406 nonsynonymous SNV 0.285 0 25 hm5C_associated_SNPs_107103 0 0 1 0 1 nucleus 0.500231214471756 0.500231643554028 0 8.58164544537132e-07 hm5C_site_60248 DeepMRMD:0;iRNA_m5C:8.58164544537132e-07 60249 chr11 59282819 59282819 1 + T A UCEC 59282815 + 59282795 59282835 41 GTAGGGGGCGATGCACAGGCCTCATCGTGGCTTCCTGGGTG GTAGGGGGCGATGCACAGGCCTCAACGTGGCTTCCTGGGTG < 41bp 0.601342244438895 0.857972236808516 0.04380247 0.10899946 prediction 0.513259984739241 Functional Gain - OR4D9 ENSG00000172742 CDS Human protein_coding chr11:59282815 chr11:59282819 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_107104 0 0 0 0 0 unknown 0.500231643912543 0.500230853699516 0 0 hm5C_site_60249 DeepMRMD:0;iRNA_m5C:0 60250 chr17 40932955 40932955 1 + C A rs61754326 40932951 + 40932931 40932971 41 CTTGGTCCCTGCCAGCCTCACCCGCTCCGGACCCCCCCGAT CTTGGTCCCTGCCAGCCTCACCCGATCCGGACCCCCCCGAT < 41bp 0.355468477580676 0.756618860067401 0.26803014 0.27068633 prediction 0.513237720134803 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40932951 chr17:40932955 nonsynonymous SNV 0.008 1 25 hm5C_associated_SNPs_107105 1 0 0 0 0 chromatin 0.500231643933493 0.500231643921126 0 0 hm5C_site_60250 DeepMRMD:0;iRNA_m5C:0 Pseudohypoaldosteronism, type 2 Pseudohypoaldosteronism, type 2 60251 chr2 95542383 95542383 1 + C A LUSC 95542379 + 95542359 95542399 41 GAAGCGGAGCAGTCCCTGCGCAACCTCGAGGACATCCACAT GAAGCGGAGCAGTCCCTGCGCAACATCGAGGACATCCACAT < 41bp 0.350354928793077 0.756613926397077 0.04730636 0.046901762 prediction 0.513227852794154 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95542379 chr2:95542383 nonsynonymous SNV 0.596 4 25 hm5C_associated_SNPs_107106 0 0 0 0 1 chromatin 0.500233200674592 0.500271668016683 0 7.69346841820173e-05 hm5C_site_60251 DeepMRMD:0;iRNA_m5C:7.69346841820173e-05 60252 chr15 62533693 62533693 1 + C A rs11637498 62533689 + 62533669 62533709 41 GGGTGCTGGTACCTGCCTTCCCGGCCACCGCTAGATCAGGA GGGTGCTGGTACCTGCCTTCCCGGACACCGCTAGATCAGGA < 41bp 0.430962822252888 0.756613361573172 0.09150821 0.0795047 prediction 0.513226723146345 Functional Gain - C2CD4B;GOLGA2P11 ENSG00000166104 ncRNA_intronic Human transcribed_unprocessed_pseudogene chr15:62533689 chr15:62533693 . . 0 25 hm5C_associated_SNPs_107107 0 0 0 0 0 unknown 0.500231644053269 0.500231645069034 0 2.03152894506786e-09 hm5C_site_60252 DeepMRMD:0;iRNA_m5C:2.03152894506786e-09 60253 chr15 29406136 29406136 1 + C T STAD 29406135 + 29406115 29406155 41 GGGGGCGTCCGTGTGGGCCACCGCATCATCGAGATCAACGG GGGGGCGTCCGTGTGGGCCACTGCATCATCGAGATCAACGG < 41bp 0.502735705798484 0.759337250909933 0.12752345 0.42070997 prediction 0.513203090222899 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29406135 chr15:29406136 nonsynonymous SNV 0.997 3 22 hm5C_associated_SNPs_107108 0 0 1 0 2 Cytosol 0.500231643356824 0.50023159735402 0 0 hm5C_site_60253 DeepMRMD:0;iRNA_m5C:0 60254 chr15 59499436 59499436 1 + T C LUAD 59499434 + 59499414 59499454 41 GCTTGAGTGATGAACTTGCCCTTGTGGATCTTGATGAAGAC GCTTGAGTGATGAACTTGCCCTCGTGGATCTTGATGAAGAC < 41bp 0.497057352424827 0.756599426966106 0.026015192 0.06786138 prediction 0.513198853932212 Functional Gain - LDHAL6B ENSG00000171989 CDS Human protein_coding chr15:59499434 chr15:59499436 synonymous SNV . 0 23 hm5C_associated_SNPs_107109 0 0 0 0 0 unknown 0.500231643915141 0.500231664767221 0 4.17041596811885e-08 hm5C_site_60254 DeepMRMD:0;iRNA_m5C:4.17041596811885e-08 60255 chr11 124013276 124013276 1 + C A rs140075877 124013272 + 124013252 124013292 41 AGAAATAATGGCTGCACAGCCTGCCGAGGTAAGATTCAATG AGAAATAATGGCTGCACAGCCTGCAGAGGTAAGATTCAATG < 41bp 0.336502750307525 0.75659663303176 0.037306637 0.09307128 prediction 0.513193266063519 Functional Gain - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124013272 chr11:124013276 synonymous SNV . 0 25 hm5C_associated_SNPs_107110 0 0 0 0 1 nucleus 0.500231622151137 0.500231643506153 0 4.27100321775953e-08 hm5C_site_60255 DeepMRMD:0;iRNA_m5C:4.27100321775953e-08 60256 chr3 10320651 10320651 1 + C A COAD 10320647 + 10320627 10320667 41 AGATTGCCAGAGTCAAAGATCAGCCACTCTCCCTCACCTTG AGATTGCCAGAGTCAAAGATCAGCAACTCTCCCTCACCTTG < 41bp 0.343481767247206 0.756593903686924 0.34914976 0.17370573 prediction 0.513187807373847 Functional Gain - TATDN2 ENSG00000157014 CDS Human protein_coding chr3:10320647 chr3:10320651 nonsynonymous SNV 0.741 0 25 hm5C_associated_SNPs_107111 0 0 1 0 3 Cytosol 0.500231643921127 0.50023441140028 0 5.53495830746265e-06 hm5C_site_60256 DeepMRMD:0;iRNA_m5C:5.53495830746265e-06 60257 chr1 71512701 71512701 1 + G T STAD 71512705 - 71512685 71512725 41 TCGGCGTGTGGCTGGCCGTGCTCGCCTTCGCCCTGCTGCCG TCGGCGTGTGGCTGGCCGTGCTCGACTTCGCCCTGCTGCCG < 41bp 0.639176959319076 0.895770507205849 0.06489387 0.08121821 prediction 0.513187095773546 Functional Gain - PTGER3 ENSG00000050628 CDS Human protein_coding chr1:71512705 chr1:71512701 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_107112 0 0 1 0 0 Endoplasmic reticulum 0.500232665844227 0.502445901550371 0 0.00442647141228747 hm5C_site_60257 DeepMRMD:0;iRNA_m5C:0.00442647141228747 60258 chr19 55106225 55106225 1 + C G LUAD 55106224 + 55106204 55106244 41 TGTCAGGGGATCCTGGAGACCCAGGAGTACCGTCTGTATAG TGTCAGGGGATCCTGGAGACCGAGGAGTACCGTCTGTATAG < 41bp 0.590717482490816 0.847307176122954 0.84646386 0.90427005 prediction 0.513179387264276 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106224 chr19:55106225 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_107113 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.11561238 0 hm5C_site_60258 DeepMRMD:0.11561238;iRNA_m5C:0 60259 chr8 27645446 27645446 1 + T C COAD 27645444 + 27645424 27645464 41 TCTGTGGGATCTGTCAACTTCATGAAACAGACCAATATCCA TCTGTGGGATCTGTCAACTTCACGAAACAGACCAATATCCA < 41bp 0.471969707289895 0.75658004306776 0.21026126 0.18613863 prediction 0.51316008613552 Functional Gain - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27645444 chr8:27645446 nonsynonymous SNV 0.879 0 23 hm5C_associated_SNPs_107114 0 0 1 0 2 Cytosol 0.500231643887713 0.500231643479931 0 0 hm5C_site_60259 DeepMRMD:0;iRNA_m5C:0 60260 chr1 179520401 179520401 1 + G T LUSC 179520405 - 179520385 179520425 41 CCTACTGAATTGCCTGTCTTCTCCCAGCAACAGAACTCAGG CCTACTGAATTGCCTGTCTTCTCCAAGCAACAGAACTCAGG < 41bp 0.329453400888556 0.756579292217384 0.11330706 0.9562206 prediction 0.513158584434768 Functional Gain - NPHS2 ENSG00000116218 CDS Human protein_coding chr1:179520405 chr1:179520401 synonymous SNV . 0 25 hm5C_associated_SNPs_107115 0 0 0 0 0 exosome 0.500231643921092 0.500232968490488 0.9124412 2.64913879166606e-06 hm5C_site_60260 DeepMRMD:0.9124412;iRNA_m5C:2.64913879166606e-06 60261 chr2 241631311 241631311 1 + T A rs543118545 241631307 + 241631287 241631327 41 CCTCAGGTGTCCTGCAGGCACAGCTCCTCGGGGGGCCCAGG CCTCAGGTGTCCTGCAGGCACAGCACCTCGGGGGGCCCAGG < 41bp 0.540698612641025 0.797276589995937 0.2646075 0.30796722 prediction 0.513155954709823 Functional Gain - AQP12A ENSG00000184945 UTR5 Human protein_coding chr2:241631307 chr2:241631311 . . 0 25 hm5C_associated_SNPs_107116 0 0 0 0 1 unknown 0.500231643921093 0.500231643921126 0 6.63913368725844e-14 hm5C_site_60261 DeepMRMD:0;iRNA_m5C:6.63913368725844e-14 60262 chr11 55419087 55419087 1 + C G BRCA 55419086 + 55419066 55419106 41 AGGCAGGCGCAAAGCCCTCTCCACCTGTGGCTCCCACATTG AGGCAGGCGCAAAGCCCTCTCGACCTGTGGCTCCCACATTG < 41bp 0.457485946834488 0.756572202667147 0.25185126 0.49566838 prediction 0.513144405334295 Functional Gain - OR4S2 ENSG00000174982 CDS Human protein_coding chr11:55419086 chr11:55419087 synonymous SNV . 0 22 hm5C_associated_SNPs_107117 0 0 0 0 0 unknown 0.500231601858986 0.500231639278395 0 7.48388184756976e-08 hm5C_site_60262 DeepMRMD:0;iRNA_m5C:7.48388184756976e-08 60263 chr8 128428255 128428255 1 + G T LUSC 128428259 - 128428239 128428279 41 CTCAGAGCCTGGCCCAACCCCCGGCCCGATTCCTGGCCCTC CTCAGAGCCTGGCCCAACCCCCGGACCGATTCCTGGCCCTC < 41bp 0.392593373046512 0.756562955612876 0.8056204 0.8167571 prediction 0.513125911225752 Functional Gain - POU5F1B ENSG00000212993 CDS Human protein_coding chr8:128428259 chr8:128428255 synonymous SNV . 0 25 hm5C_associated_SNPs_107118 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0222734 0 hm5C_site_60263 DeepMRMD:0.0222734;iRNA_m5C:0 60264 chr17 43174523 43174523 1 + C A PAAD 43174522 + 43174502 43174542 41 CCGGCCACCCGGCTGGCTCCCCCAGTGGCACTGTGGGGTTC CCGGCCACCCGGCTGGCTCCCACAGTGGCACTGTGGGGTTC < 41bp 0.514762243607955 0.771320157101731 0.37864292 0.38143486 prediction 0.513115826987551 Functional Gain - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43174522 chr17:43174523 synonymous SNV . 0 22 hm5C_associated_SNPs_107119 0 0 1 0 2 Ribosome 0.500231644039779 0.500231643921093 0 0 hm5C_site_60264 DeepMRMD:0;iRNA_m5C:0 60265 chr20 26061960 26061960 1 + T C LIHC 26061958 + 26061938 26061978 41 ATCCCGGAGGGGTCTCTGCGCCTCAGTCGGCATCGCAGCTG ATCCCGGAGGGGTCTCTGCGCCCCAGTCGGCATCGCAGCTG < 41bp 0.500819491376279 0.757375972620512 0.10680702 0.05314824 prediction 0.513112962488466 Functional Gain - FAM182A ENSG00000125804 ncRNA_exonic Human processed_transcript chr20:26061958 chr20:26061960 . . 0 23 hm5C_associated_SNPs_107120 0 0 0 0 1 unknown 0.500231643065133 0.500231647311079 0 8.49189230045511e-09 hm5C_site_60265 DeepMRMD:0;iRNA_m5C:8.49189230045511e-09 60266 chr1 46807117 46807117 1 + C A rs72885163 46807113 + 46807093 46807133 41 CTCGAGCTGCCTCTGGCGACCGGGCAAGGTTACAGCGACCA CTCGAGCTGCCTCTGGCGACCGGGAAAGGTTACAGCGACCA < 41bp 0.414347318060846 0.756554479910639 0.29596114 0.7067002 prediction 0.513108959821278 Functional Gain - NSUN4 ENSG00000117481 UTR5 Human protein_coding chr1:46807113 chr1:46807117 . . 0 25 hm5C_associated_SNPs_107121 0 0 0 0 1 Cytosol 0.500231643485457 0.500231643923245 0.4134004 8.75577610415235e-10 hm5C_site_60266 DeepMRMD:0.4134004;iRNA_m5C:8.75577610415235e-10 60267 chr4 88928835 88928835 1 + C G rs562972225 88928831 + 88928811 88928851 41 AAGGAACATGGCTCCTGAGGCGCACAGCGCCGAGCGCGGCG AAGGAACATGGCTCCTGAGGCGCAGAGCGCCGAGCGCGGCG < 41bp 0.531530285780873 0.788079450807656 0.28021586 0.613516 prediction 0.513098330053566 Functional Gain - PKD2 ENSG00000118762 UTR5 Human protein_coding chr4:88928831 chr4:88928835 . . 0 25 hm5C_associated_SNPs_107122 0 0 0 0 0 Endoplasmic reticulum 0.50023151491122 0.499972244554413 0.227032 0 hm5C_site_60267 DeepMRMD:0.227032;iRNA_m5C:0 60268 chr1 161576227 161576227 1 + C G rs3754052 161576226 + 161576206 161576246 41 CTACGTGGCCTTCACCGACACCGAGCGGCTGGTCGGGGACG CTACGTGGCCTTCACCGACACGGAGCGGCTGGTCGGGGACG < 41bp 0.554040443283482 0.810584616486005 0.31580094 0.6450095 prediction 0.513088346405046 Functional Gain - HSPA7 ENSG00000225217 ncRNA_exonic Human unprocessed_pseudogene chr1:161576226 chr1:161576227 . . 0 22 hm5C_associated_SNPs_107123 0 0 0 0 0 unknown 0.500231539757266 0.50026070633601 0.290019 5.83331574897095e-05 hm5C_site_60268 DeepMRMD:0.290019;iRNA_m5C:5.83331574897095e-05 60269 chr18 60036539 60036539 1 + C T SKCM 60036538 + 60036518 60036558 41 CTGTGAACCCCTCGTGGGTTCCCCAAAACGTGGACCCTTGC CTGTGAACCCCTCGTGGGTTCTCCAAAACGTGGACCCTTGC < 41bp 0.492738411148862 0.756544172187457 0.25546968 0.9652223 prediction 0.513088344374914 Functional Gain - TNFRSF11A ENSG00000141655 CDS Human protein_coding chr18:60036538 chr18:60036539 synonymous SNV . 0 22 hm5C_associated_SNPs_107124 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0.9304446 0 hm5C_site_60269 DeepMRMD:0.9304446;iRNA_m5C:0 60270 chr5 3600743 3600743 1 + C A rs6884950 3600739 + 3600719 3600759 41 GCAGAGAGAGACCTCGTCCCCAGGCCAGATTCGCCGGCACA GCAGAGAGAGACCTCGTCCCCAGGACAGATTCGCCGGCACA < 41bp 0.65598597382396 0.912528713993879 0.771292 0.88376033 prediction 0.513085480339838 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600739 chr5:3600743 nonsynonymous SNV 0.979 0 25 hm5C_associated_SNPs_107125 0 0 0 0 2 exosome 0.500231643921092 0.500231643921093 0.22493666 2.22044604925031e-16 hm5C_site_60270 DeepMRMD:0.22493666;iRNA_m5C:2.22044604925031e-16 60271 chr8 8889428 8889428 1 + C G rs117334265 8889424 + 8889404 8889444 41 ATTACAGGCGCGTGCCACCACACCCGCCTAATTTTTGTATT ATTACAGGCGCGTGCCACCACACCGGCCTAATTTTTGTATT < 41bp 0.509251198271707 0.765772183124044 0.12275809 0.3060871 prediction 0.513041969704674 Functional Gain - ERI1 ENSG00000104626 UTR3 Human protein_coding chr8:8889424 chr8:8889428 . . 0 25 hm5C_associated_SNPs_107126 0 0 0 0 0 Ribosome 0.500231643923376 0.500231644124036 0 4.01319644183218e-10 hm5C_site_60271 DeepMRMD:0;iRNA_m5C:4.01319644183218e-10 60272 chr1 3649652 3649652 1 + C A rs368763879 3649648 + 3649628 3649668 41 GGCCGAGATCCACTGAGGGCCTCGCCTGGCTGCAGCCTGCG GGCCGAGATCCACTGAGGGCCTCGACTGGCTGCAGCCTGCG < 41bp 0.39165564416554 0.75650921543183 0.12884343 0.79823196 prediction 0.513018430863659 Functional Gain - TP73 ENSG00000078900 UTR3 Human protein_coding chr1:3649648 chr1:3649652 . . 0 25 hm5C_associated_SNPs_107127 0 0 1 0 0 chromatin 0.500231638002048 0.50023164392123 0.59646392 1.18383653990861e-08 hm5C_site_60272 DeepMRMD:0.59646392;iRNA_m5C:1.18383653990861e-08 60273 chr8 2040298 2040298 1 + C G rs2235122 2040297 + 2040277 2040317 41 CTACGTGGACTGCTGTGTGGCCGGAACCAACCTCTGGGAGC CTACGTGGACTGCTGTGTGGCGGGAACCAACCTCTGGGAGC < 41bp 0.594554779370604 0.851060601923615 0.77877223 0.91136795 prediction 0.513011645106021 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2040297 chr8:2040298 synonymous SNV . 0 22 hm5C_associated_SNPs_107128 0 0 1 0 1 exosome 0.500231635504715 0.500231643890114 0.26519144 1.67707980835985e-08 hm5C_site_60273 DeepMRMD:0.26519144;iRNA_m5C:1.67707980835985e-08 60274 chr20 20051575 20051575 1 + C T SARC 20051574 + 20051554 20051594 41 AGGCCACCTTCCTGGACTACCCCAACTGGAATGTTGCCAAG AGGCCACCTTCCTGGACTACCTCAACTGGAATGTTGCCAAG < 41bp 0.493873987189332 0.756504093093774 0.110224426 0.40895087 prediction 0.513008186187549 Functional Gain - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20051574 chr20:20051575 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107129 0 0 0 0 2 nucleus 0.500231643921092 0.500231643919229 0 0 hm5C_site_60274 DeepMRMD:0;iRNA_m5C:0 60275 chr16 4559505 4559505 1 + T C GBM 4559503 + 4559483 4559523 41 ACGATGGGAAAGGAGACATGCGTAAATGCCCTTTCTACGCT ACGATGGGAAAGGAGACATGCGCAAATGCCCTTTCTACGCT < 41bp 0.550951725156004 0.807445650957796 0.16749221 0.09407371 prediction 0.512987851603585 Functional Gain - HMOX2 ENSG00000103415 CDS Human protein_coding chr16:4559503 chr16:4559505 synonymous SNV . 0 23 hm5C_associated_SNPs_107130 0 0 1 0 2 Cytosol 0.500231643884838 0.500231643967419 0 1.65162550302966e-10 hm5C_site_60275 DeepMRMD:0;iRNA_m5C:1.65162550302966e-10 60276 chr4 48490487 48490487 1 + T C ESCA 48490485 + 48490465 48490505 41 GTGACTCTGGTGGTCCTTTTCATAATGACCGGCACTATGTT GTGACTCTGGTGGTCCTTTTCACAATGACCGGCACTATGTT < 41bp 0.554638763054296 0.811126002232151 0.39870292 0.41825223 prediction 0.51297447835571 Functional Gain - SLC10A4 ENSG00000145248 CDS Human protein_coding chr4:48490485 chr4:48490487 nonsynonymous SNV 0.985 1 23 hm5C_associated_SNPs_107131 0 0 0 0 1 exosome 0.500231643921069 0.500231643918878 0 0 hm5C_site_60276 DeepMRMD:0;iRNA_m5C:0 60277 chr9 77249576 77249576 1 + T G SKCM 77249573 + 77249553 77249593 41 TTTAGGAGGAGCCAGCAGAACAATGCTTCTTATTCCTGCCC TTTAGGAGGAGCCAGCAGAACAAGGCTTCTTATTCCTGCCC < 41bp 0.365547866372149 0.756482095975204 0.2704941 0.8905857 prediction 0.512964191950408 Functional Gain - RORB ENSG00000198963 CDS Human protein_coding chr9:77249573 chr9:77249576 nonsynonymous SNV 1.000 5 24 hm5C_associated_SNPs_107132 0 0 0 0 1 exosome 0.50023164301459 0.500231643921066 0.7811714 1.81295134460413e-09 hm5C_site_60277 DeepMRMD:0.7811714;iRNA_m5C:1.81295134460413e-09 60278 chr14 90429760 90429760 1 + C G rs35455108 90429759 + 90429739 90429779 41 ATGAGCTGCAACCAGAAATGCCGCAGAAGCAGGCTGAGAAA ATGAGCTGCAACCAGAAATGCGGCAGAAGCAGGCTGAGAAA < 41bp 0.577774317701739 0.834248409498815 0.7228105 0.90106595 prediction 0.512948183594152 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90429759 chr14:90429760 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_107133 0 0 1 0 0 chromatin 0.500231600221004 0.500231643921898 0.3565109 8.74017886953737e-08 hm5C_site_60278 DeepMRMD:0.3565109;iRNA_m5C:8.74017886953737e-08 60279 chr10 120879962 120879962 1 + C G BLCA 120879961 + 120879941 120879981 41 AGAAGCGGTCCAGGAGTTCACCAGGTATCACCTCTAATTAT AGAAGCGGTCCAGGAGTTCACGAGGTATCACCTCTAATTAT < 41bp 0.45996781919459 0.756467932829309 0.77700865 0.8924466 prediction 0.512935865658618 Functional Gain - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120879961 chr10:120879962 synonymous SNV 0.991 0 22 hm5C_associated_SNPs_107134 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921126 0.2308759 6.72795152922845e-14 hm5C_site_60279 DeepMRMD:0.2308759;iRNA_m5C:6.72795152922845e-14 60280 chr18 10485517 10485517 1 + C A UCEC 10485513 + 10485493 10485533 41 TCTATCGGTCAGACGAGCACCACCCTCCCATCCTGCCCCCA TCTATCGGTCAGACGAGCACCACCATCCCATCCTGCCCCCA < 41bp 0.317627522779912 0.756464676706673 0.11942455 0.16317064 prediction 0.512929353413346 Functional Gain - APCDD1 ENSG00000154856 CDS Human protein_coding chr18:10485513 chr18:10485517 nonsynonymous SNV 0.875 4 25 hm5C_associated_SNPs_107135 0 0 0 0 1 Cytosol 0.50023173402549 0.500224166788401 0 0 hm5C_site_60280 DeepMRMD:0;iRNA_m5C:0 60281 chr1 151206870 151206870 1 + C T rs61744400 151206869 + 151206849 151206889 41 AGAGCGAGAGAAGCCTCTTCCCACATTTAAAGACCTAGACT AGAGCGAGAGAAGCCTCTTCCTACATTTAAAGACCTAGACT < 41bp 0.501179957665359 0.757632986492208 0.059375197 0.23891959 prediction 0.512906057653697 Functional Gain - PIP5K1A ENSG00000143398 CDS Human protein_coding chr1:151206869 chr1:151206870 synonymous SNV . 0 22 hm5C_associated_SNPs_107136 0 0 0 0 0 Ribosome 0.500231643920426 0.500231643921092 0 1.33226762955019e-12 hm5C_site_60281 DeepMRMD:0;iRNA_m5C:1.33226762955019e-12 60282 chr7 150439371 150439371 1 + T C LUSC 150439369 + 150439349 150439389 41 GTGCCACAGGGAACAGCATCCTTGGCCAGCCCGTGTTTGAG GTGCCACAGGGAACAGCATCCTCGGCCAGCCCGTGTTTGAG < 41bp 0.524940779415651 0.781393592598637 0.2542106 0.2592102 prediction 0.512905626365971 Functional Gain - GIMAP1-GIMAP5;GIMAP5 ENSG00000196329 CDS Human protein_coding chr7:150439369 chr7:150439371 synonymous SNV . 0 23 hm5C_associated_SNPs_107137 0 0 0 0 0 unknown 0.500231644712563 0.500231643939135 0 0 hm5C_site_60282 DeepMRMD:0;iRNA_m5C:0 60283 chr17 56232573 56232573 1 + C G UCEC 56232569 + 56232549 56232589 41 TTGTCCTCTTAGGGTTTTCACAGACCCAAGAGCTCCAGAAA TTGTCCTCTTAGGGTTTTCACAGAGCCAAGAGCTCCAGAAA < 41bp 0.542286540273089 0.798734929244643 0.7022613 0.9085643 prediction 0.512896777943107 Functional Gain - OR4D1 ENSG00000141194 CDS Human protein_coding chr17:56232569 chr17:56232573 nonsynonymous SNV 0.910 0 25 hm5C_associated_SNPs_107138 0 0 0 0 0 unknown 0.500231643921092 0.500231643921097 0.412606 8.65973959207622e-15 hm5C_site_60283 DeepMRMD:0.412606;iRNA_m5C:8.65973959207622e-15 60284 chr9 84533335 84533335 1 + C A ACC 84533331 + 84533311 84533351 41 TAGACGAAGTCAGTCAGAAACAGACTATACTTGCCAGTAGA TAGACGAAGTCAGTCAGAAACAGAATATACTTGCCAGTAGA < 41bp 0.41947550909196 0.756444295378986 0.26564234 0.36662507 prediction 0.512888590757973 Functional Gain - SPATA31D5P ENSG00000240632 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:84533331 chr9:84533335 . . 0 25 hm5C_associated_SNPs_107139 0 0 0 0 0 unknown 0.50023167760369 0.500176000715884 0 0 hm5C_site_60284 DeepMRMD:0;iRNA_m5C:0 60285 chrX 66765344 66765344 1 + C A LUAD 66765340 + 66765320 66765360 41 ATGAGGAACAGCAACCTTCACAGCCGCAGTCGGCCCTGGAG ATGAGGAACAGCAACCTTCACAGCAGCAGTCGGCCCTGGAG < 41bp 0.361728479628252 0.7564389390753 0.23398194 0.26012185 prediction 0.5128778781506 Functional Gain - AR ENSG00000169083 CDS Human protein_coding chrX:66765340 chrX:66765344 nonsynonymous SNV 0.691 0 25 hm5C_associated_SNPs_107140 0 0 0 0 0 Endoplasmic reticulum 0.500231643921095 0.500231643921092 0 0 hm5C_site_60285 DeepMRMD:0;iRNA_m5C:0 60286 chrX 64721903 64721903 1 + C A UCEC 64721899 + 64721879 64721919 41 GCCAATCAGATCCCAGCATCCGGTCTGTGGCTATGGAGCCT GCCAATCAGATCCCAGCATCCGGTATGTGGCTATGGAGCCT < 41bp 0.354417806815108 0.756436179764151 0.28614837 0.33628407 prediction 0.512872359528303 Functional Gain - ZC3H12B ENSG00000102053 CDS Human protein_coding chrX:64721899 chrX:64721903 nonsynonymous SNV 0.981 4 25 hm5C_associated_SNPs_107141 0 0 0 0 0 Endoplasmic reticulum 0.500231644482791 0.500231643921092 0 0 hm5C_site_60286 DeepMRMD:0;iRNA_m5C:0 60287 chr4 90757615 90757615 1 + C G rs34742750 90757611 + 90757591 90757631 41 AGAGAAAAGTTGGATGCTCACGCTCCATGGAGCATCCTCGC AGAGAAAAGTTGGATGCTCACGCTGCATGGAGCATCCTCGC < 41bp 0.488186052342732 0.756414514275623 0.14788347 0.095060915 prediction 0.512829028551247 Functional Gain - SNCA-AS1 ENSG00000247775 ncRNA_exonic Human antisense chr4:90757611 chr4:90757615 . . 0 25 hm5C_associated_SNPs_107142 0 0 0 0 0 unknown 0.500231651080805 0.500232156793832 0 1.01142605446469e-06 hm5C_site_60287 DeepMRMD:0;iRNA_m5C:1.01142605446469e-06 60288 chr12 125621341 125621341 1 + T C CESC 125621339 + 125621319 125621359 41 CTGACTTGGTTAAGAGGATCCGTGACGCCATCCGCATGGGC CTGACTTGGTTAAGAGGATCCGCGACGCCATCCGCATGGGC < 41bp 0.537681924264802 0.794093547561309 0.29976505 0.2985087 prediction 0.512823246593013 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125621339 chr12:125621341 synonymous SNV . 0 23 hm5C_associated_SNPs_107143 0 0 0 1 1 Ribosome 0.500231652526626 0.500231662832431 0 2.06116099743525e-08 hm5C_site_60288 DeepMRMD:0;iRNA_m5C:2.06116099743525e-08 60289 chr1 248616159 248616159 1 + C G LUSC 248616155 + 248616135 248616175 41 TTCGTCCTCACAGGCCTCATCACCCATCCTGCCTTCCCCGG TTCGTCCTCACAGGCCTCATCACCGATCCTGCCTTCCCCGG < 41bp 0.530677297689139 0.787085000368813 0.23009613 0.5297871 prediction 0.512815405359349 Functional Gain - OR2T2 ENSG00000196240 CDS Human protein_coding chr1:248616155 chr1:248616159 nonsynonymous SNV 0.070 0 25 hm5C_associated_SNPs_107144 0 0 0 0 0 exosome 0.500230698748177 0.500231536674738 0.0595741999999999 1.67585312293994e-06 hm5C_site_60289 DeepMRMD:0.0595741999999999;iRNA_m5C:1.67585312293994e-06 60290 chrX 41333780 41333780 1 + C A LUSC 41333779 + 41333759 41333799 41 GGAGGGCTCCGGACGTGTCACCGACGTGCCGTGCGCCTCCC GGAGGGCTCCGGACGTGTCACAGACGTGCCGTGCGCCTCCC < 41bp 0.505146153724373 0.761552499012502 0.37212536 0.75773376 prediction 0.512812690576257 Functional Gain - NYX ENSG00000188937 CDS Human protein_coding chrX:41333779 chrX:41333780 synonymous SNV . 0 22 hm5C_associated_SNPs_107145 0 0 0 0 0 unknown 0.500231632727169 0.500231659893906 0.51546752 5.43334757185931e-08 hm5C_site_60290 DeepMRMD:0.51546752;iRNA_m5C:5.43334757185931e-08 60291 chr4 2695381 2695381 1 + C T SKCM 2695380 + 2695360 2695400 41 CCAGCCGCCCCGAGGAATAGCCCCACGGGCTTGGCCCCCCT CCAGCCGCCCCGAGGAATAGCTCCACGGGCTTGGCCCCCCT < 41bp 0.531418605855526 0.787821936821331 0.4771365 0.94281507 prediction 0.512806661931609 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2695380 chr4:2695381 nonsynonymous SNV 0.897 1 22 hm5C_associated_SNPs_107146 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643944426 0.88563014 4.66677807509086e-11 hm5C_site_60291 DeepMRMD:0.88563014;iRNA_m5C:4.66677807509086e-11 60292 chr5 75428132 75428132 1 + C G BLCA 75428131 + 75428111 75428151 41 CTGAGACAGACCTCTGCATCCCAAATTCAGGATCTGGATGG CTGAGACAGACCTCTGCATCCGAAATTCAGGATCTGGATGG < 41bp 0.449692998765733 0.756389047788237 0.14275831 0.266791 prediction 0.512778095576474 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75428131 chr5:75428132 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_107147 0 0 0 0 1 exosome 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_60292 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 60293 chr8 55370910 55370910 1 + C A LUAD 55370906 + 55370886 55370926 41 AGGGCGAGTCCCGTATCCGGCGGCCGATGAACGCTTTCATG AGGGCGAGTCCCGTATCCGGCGGCAGATGAACGCTTTCATG < 41bp 0.653850458848432 0.910227262196921 0.8227504 0.88581294 prediction 0.512753606696977 Functional Gain - SOX17 ENSG00000164736 CDS Human protein_coding chr8:55370906 chr8:55370910 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_107148 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921194 0.12612508 2.03836947321179e-13 hm5C_site_60293 DeepMRMD:0.12612508;iRNA_m5C:2.03836947321179e-13 60294 chr22 32880005 32880005 1 + C T UCEC 32880004 + 32879984 32880024 41 AATCGGTGGAAGGGCAAGTGCCACATTCATTAGAGACCTTG AATCGGTGGAAGGGCAAGTGCTACATTCATTAGAGACCTTG < 41bp 0.503679722881374 0.760054391000245 0.032366216 0.31790194 prediction 0.512749336237742 Functional Gain - FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32880004 chr22:32880005 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_107149 0 0 1 0 0 chromatin 0.500231650014634 0.500231644006347 0 0 hm5C_site_60294 DeepMRMD:0;iRNA_m5C:0 60295 chr14 37641880 37641880 1 + C A rs1403 37641876 + 37641856 37641896 41 TTGTCTCCTAGATTGGCGCCCACGCCCTTCTCTATCAGGAG TTGTCTCCTAGATTGGCGCCCACGACCTTCTCTATCAGGAG < 41bp 0.391905143157313 0.756358517012695 0.074604005 0.08491534 prediction 0.51271703402539 Functional Gain - SLC25A21-AS1 ENSG00000183032;ENSG00000258708 UTR5;UTR3 Human other chr14:37641876 chr14:37641880 . . 0 25 hm5C_associated_SNPs_107150 0 0 1 0 0 unknown 0.500231643920411 0.500231643918745 0 0 hm5C_site_60295 DeepMRMD:0;iRNA_m5C:0 60296 chr11 130343371 130343371 1 + C G LUAD 130343367 + 130343347 130343387 41 CTCCAACCAGGTGGAGCAGCCGGACGACAGGCCCCCTGCAC CTCCAACCAGGTGGAGCAGCCGGAGGACAGGCCCCCTGCAC < 41bp 0.558864153391302 0.815219684397947 0.94071925 0.95152795 prediction 0.512711062013291 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130343367 chr11:130343371 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_107151 0 0 0 0 0 exosome 0.500231643921506 0.500231643921092 0.0216174 0 hm5C_site_60296 DeepMRMD:0.0216174;iRNA_m5C:0 60297 chr11 43350323 43350323 1 + C T UCEC 43350322 + 43350302 43350342 41 AGAATGCTGGTAATGAAGAACCCAAGCTACAGTTCAGTTAT AGAATGCTGGTAATGAAGAACTCAAGCTACAGTTCAGTTAT < 41bp 0.49479489424589 0.756354311058304 0.07811642 0.14825803 prediction 0.512708622116609 Functional Gain - API5 ENSG00000166181 CDS Human protein_coding chr11:43350322 chr11:43350323 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107152 0 0 1 0 1 Ribosome 0.500231643863646 0.50023164370801 0 0 hm5C_site_60297 DeepMRMD:0;iRNA_m5C:0 60298 chr6 44144631 44144631 1 + C A PRAD 44144627 + 44144607 44144647 41 CGCTCCTGGAGATCTGCAACCTCACGCCTGATACACTCTCT CGCTCCTGGAGATCTGCAACCTCAAGCCTGATACACTCTCT < 41bp 0.319136546507927 0.756349872348887 0.010930121 0.052349567 prediction 0.512699744697773 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44144627 chr6:44144631 nonsynonymous SNV 0.734 4 25 hm5C_associated_SNPs_107153 0 0 0 0 1 exosome 0.50029848729762 0.500231643919932 0 0 hm5C_site_60298 DeepMRMD:0;iRNA_m5C:0 60299 chr9 91150599 91150599 1 + C A LUAD 91150595 + 91150575 91150615 41 TCCCAGGAGATGCTGGACTTCATGCGCGAGCTGCATGGCGC TCCCAGGAGATGCTGGACTTCATGAGCGAGCTGCATGGCGC < 41bp 0.655276166316025 0.911621468361658 0.680642 0.62166107 prediction 0.512690604091266 Functional Gain - NXNL2 ENSG00000130045 CDS Human protein_coding chr9:91150595 chr9:91150599 nonsynonymous SNV 0.998 0 25 hm5C_associated_SNPs_107154 0 0 0 0 1 Nucleus 0.500231644410963 0.50023164391298 0 0 hm5C_site_60299 DeepMRMD:0;iRNA_m5C:0 60300 chr4 47427841 47427841 1 + C G LUAD 47427840 + 47427820 47427860 41 TACCGCAAGCCCCTGAGCAGCCGCGAGGCCTACGGGCGCGC TACCGCAAGCCCCTGAGCAGCGGCGAGGCCTACGGGCGCGC < 41bp 0.453346579328894 0.756340347194013 0.3809244 0.6541834 prediction 0.512680694388026 Functional Gain - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47427840 chr4:47427841 nonsynonymous SNV 0.882 1 22 hm5C_associated_SNPs_107155 0 0 0 0 0 Cytosol 0.500231643820538 0.500231643921093 0.3083668 2.0110979548349e-10 hm5C_site_60300 DeepMRMD:0.3083668;iRNA_m5C:2.0110979548349e-10 60301 chr4 2673963 2673963 1 + C G rs146511820 2673962 + 2673942 2673982 41 CTGGCCATCAGTTCTTGAGCCCAGAGAAGCCCACACACCCT CTGGCCATCAGTTCTTGAGCCGAGAGAAGCCCACACACCCT < 41bp 0.439997237501392 0.756332830410744 0.21569577 0.57953835 prediction 0.512665660821489 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2673962 chr4:2673963 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_107156 0 0 0 2 0 Cytosol 0.500231643921113 0.500231643921184 0.1590767 1.4255263636187e-13 hm5C_site_60301 DeepMRMD:0.1590767;iRNA_m5C:1.4255263636187e-13 60302 chr19 50209263 50209263 1 + C T SKCM 50209262 + 50209242 50209282 41 CTCCCGAAACAGCCTGCTTTCCCCGAGAGCCCTGGAGCAGC CTCCCGAAACAGCCTGCTTTCTCCGAGAGCCCTGGAGCAGC < 41bp 0.491175908861287 0.756331363469825 0.49989983 0.7995975 prediction 0.51266272693965 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50209262 chr19:50209263 synonymous SNV . 0 22 hm5C_associated_SNPs_107157 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.599195 0 hm5C_site_60302 DeepMRMD:0.599195;iRNA_m5C:0 60303 chr1 28081734 28081734 1 + C A KIRC 28081730 + 28081710 28081750 41 TCCCCAGACCTGGCTCTGGACTCACCAGGCACTGACCACTT TCCCCAGACCTGGCTCTGGACTCAACAGGCACTGACCACTT < 41bp 0.321051415150472 0.756321971646493 0.019162834 0.09382254 prediction 0.512643943292986 Functional Gain - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28081730 chr1:28081734 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_107158 0 0 1 0 1 chromatin 0.500231644399105 0.500231643921092 0 0 hm5C_site_60303 DeepMRMD:0;iRNA_m5C:0 60304 chr10 50819686 50819686 1 + C A UCEC 50819682 + 50819662 50819702 41 CGTGGTGGCCGGCGCGCTCACCACCTGTAACATTCCCCTCG CGTGGTGGCCGGCGCGCTCACCACATGTAACATTCCCCTCG < 41bp 0.357951245036226 0.756321061477062 0.24007717 0.9016711 prediction 0.512642122954123 Functional Gain - SLC18A3 ENSG00000187714 CDS Human protein_coding chr10:50819682 chr10:50819686 synonymous SNV . 0 25 hm5C_associated_SNPs_107159 0 0 0 0 0 exosome 0.500231999376358 0.500231643911896 0.8033422 0 hm5C_site_60304 DeepMRMD:0.8033422;iRNA_m5C:0 60305 chr19 56467088 56467088 1 + T A ACC 56467084 + 56467064 56467104 41 GAAGCAAAAGCTATCTCTCTCACATGGGACTTTTCTTATTC GAAGCAAAAGCTATCTCTCTCACAAGGGACTTTTCTTATTC < 41bp 0.436626730508518 0.756319665875386 0.24680647 0.3460167 prediction 0.512639331750772 Functional Gain - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56467084 chr19:56467088 nonsynonymous SNV 0.212 4 25 hm5C_associated_SNPs_107160 0 0 0 0 0 unknown 0.500231643918808 0.500231643921092 0 4.56923388014729e-12 hm5C_site_60305 DeepMRMD:0;iRNA_m5C:4.56923388014729e-12 60306 chr11 48166425 48166425 1 + T G GBM 48166422 + 48166402 48166442 41 TTACAATGGGAAGCTGGAACCTCTGGGCTCCTACCGGTAAT TTACAATGGGAAGCTGGAACCTCGGGGCTCCTACCGGTAAT < 41bp 0.374850388473292 0.756319198595535 0.20205072 0.835888 prediction 0.51263839719107 Functional Gain - PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48166422 chr11:48166425 nonsynonymous SNV 0.983 2 24 hm5C_associated_SNPs_107161 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231621510407 0.671776 0 hm5C_site_60306 DeepMRMD:0.671776;iRNA_m5C:0 60307 chr19 30935740 30935740 1 + C A UCEC 30935736 + 30935716 30935756 41 GCGGCATGTCCCAGGAGGCCCACGCCAACCTGTACTCCAGG GCGGCATGTCCCAGGAGGCCCACGACAACCTGTACTCCAGG < 41bp 0.340885385069165 0.756315655061629 0.1954917 0.21562591 prediction 0.512631310123258 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935736 chr19:30935740 nonsynonymous SNV 0.973 4 25 hm5C_associated_SNPs_107162 0 0 1 0 0 exosome 0.500231643921123 0.500231643940262 0 3.82784914876311e-11 hm5C_site_60307 DeepMRMD:0;iRNA_m5C:3.82784914876311e-11 60308 chr7 155532539 155532539 1 + C T BRCA 155532538 + 155532518 155532558 41 CGCCCCAGCACCAGCCCCCACCCCAGCACCCACCACAGCAC CGCCCCAGCACCAGCCCCCACTCCAGCACCCACCACAGCAC < 41bp 0.526439274514844 0.782747918412131 0.11235267 0.93388116 prediction 0.512617287794573 Functional Gain - RBM33 ENSG00000184863 CDS Human protein_coding chr7:155532538 chr7:155532539 nonsynonymous SNV 0.034 0 22 hm5C_associated_SNPs_107163 0 0 0 0 0 Nucleus 0.500231643726173 0.500231643921046 0.86776232 3.89745791196106e-10 hm5C_site_60308 DeepMRMD:0.86776232;iRNA_m5C:3.89745791196106e-10 60309 chr15 102516492 102516492 1 + C G LUSC 102516491 + 102516471 102516511 41 GGGCTCCATGACACCTTCCCCCCCAGACCCAGACTTGGGCC GGGCTCCATGACACCTTCCCCGCCAGACCCAGACTTGGGCC < 41bp 0.557550779093345 0.813848829438026 0.044223666 0.7534697 prediction 0.512596100689362 Functional Gain - WASH3P ENSG00000185596 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102516491 chr15:102516492 . . 0 22 hm5C_associated_SNPs_107164 0 0 0 0 0 unknown 0.500231644031842 0.500231641149002 0.5069394 0 hm5C_site_60309 DeepMRMD:0.5069394;iRNA_m5C:0 60310 chr6 3114664 3114664 1 + C G rs559968143 3114663 + 3114643 3114683 41 CTTTCAAAGCCCACCTGAAACCTGGGGGTGGATGAAAGAAC CTTTCAAAGCCCACCTGAAACGTGGGGGTGGATGAAAGAAC < 41bp 0.545931657377858 0.802222543172767 0.3030344 0.71776867 prediction 0.512581771589817 Functional Gain - RIPK1 ENSG00000137275 UTR3 Human protein_coding chr6:3114663 chr6:3114664 . . 0 22 hm5C_associated_SNPs_107165 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921076 0.43553734 0 hm5C_site_60310 DeepMRMD:0.43553734;iRNA_m5C:0 60311 chr2 241500134 241500134 1 + C G rs577759509 241500133 + 241500113 241500153 41 AGAAGCTGGGCGCCGCGGGGCCGCCTCGCCCGTACCTCCAC AGAAGCTGGGCGCCGCGGGGCGGCCTCGCCCGTACCTCCAC < 41bp 0.452411805854962 0.756277941469064 0.19268036 0.8505706 prediction 0.512555882938129 Functional Gain - DUSP28 ENSG00000188542 CDS Human protein_coding chr2:241500133 chr2:241500134 synonymous SNV . 0 22 hm5C_associated_SNPs_107166 0 0 0 0 0 exosome 0.500231643921146 0.500231643921074 0.7011412 0 hm5C_site_60311 DeepMRMD:0.7011412;iRNA_m5C:0 60312 chr12 14927594 14927594 1 + C G KIRP 14927593 + 14927573 14927613 41 GAGTACCTTACGGCGGAGATCCTGGAGCTGGCTGGCAACGC GAGTACCTTACGGCGGAGATCGTGGAGCTGGCTGGCAACGC < 41bp 0.595832955818311 0.852101596568897 0.9149715 0.93137753 prediction 0.512537281501173 Functional Gain - H2AFJ ENSG00000246705 CDS Human protein_coding chr12:14927593 chr12:14927594 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_107167 0 0 1 0 0 Ribosome 0.500231643921091 0.500231643921093 0.0328120599999999 3.33066907387547e-15 hm5C_site_60312 DeepMRMD:0.0328120599999999;iRNA_m5C:3.33066907387547e-15 60313 chr19 50880053 50880053 1 + T G rs76217494 50880050 + 50880030 50880070 41 GCCATGAGCCCCGCCCCCCGCTGTTGCTTGGAGAGGGGCGG GCCATGAGCCCCGCCCCCCGCTGGTGCTTGGAGAGGGGCGG < 41bp 0.375391286255353 0.75626424555409 0.24425605 0.37001845 prediction 0.512528491108179 Functional Gain - NR1H2 ENSG00000131408 UTR5 Human protein_coding chr19:50880050 chr19:50880053 . . 0 24 hm5C_associated_SNPs_107168 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60313 DeepMRMD:0;iRNA_m5C:0 60314 chr6 31802804 31802804 1 + C G rs11548074 31802800 + 31802780 31802820 41 CTTGCGCTGCCTTTGCGCAGCAGCCGGCGGGCGGCCACGTC CTTGCGCTGCCTTTGCGCAGCAGCGGGCGGGCGGCCACGTC < 41bp 0.490718013954073 0.756256677070375 0.37023914 0.7647601 prediction 0.512513354140751 Functional Gain - C6orf48 ENSG00000204387 UTR5 Human protein_coding chr6:31802800 chr6:31802804 . . 0 25 hm5C_associated_SNPs_107169 0 0 1 0 0 Ribosome 0.500231643923589 0.500231643985409 0.5295202 1.23639321003566e-10 hm5C_site_60314 DeepMRMD:0.5295202;iRNA_m5C:1.23639321003566e-10 60315 chr8 11644438 11644438 1 + C G rs535687631 11644437 + 11644417 11644457 41 GGGACCACGGGTGTGAGCCACCGCGCCCAGCTAGCTCCTGT GGGACCACGGGTGTGAGCCACGGCGCCCAGCTAGCTCCTGT < 41bp 0.551551185743944 0.80779477306436 0.3791276 0.7141006 prediction 0.512487174640831 Functional Gain - NEIL2 ENSG00000154328 UTR3 Human protein_coding chr8:11644437 chr8:11644438 . . 0 22 hm5C_associated_SNPs_107170 0 0 1 2 0 Ribosome 0.500231644228313 0.500231643921635 0.4282012 0 hm5C_site_60315 DeepMRMD:0.4282012;iRNA_m5C:0 60316 chr17 6023803 6023803 1 + T A KIRC 6023799 + 6023779 6023819 41 ACGTGTCTGTGAGCGAGGAGCGGCTGCTCTGCGTGGAGAAC ACGTGTCTGTGAGCGAGGAGCGGCAGCTCTGCGTGGAGAAC < 41bp 0.443198593424007 0.756230357306789 0.42903167 0.59919643 prediction 0.512460714613579 Functional Gain - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6023799 chr17:6023803 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_107171 0 0 0 0 0 exosome 0.50023165477056 0.500231659506457 0.19839286 9.47179357169148e-09 hm5C_site_60316 DeepMRMD:0.19839286;iRNA_m5C:9.47179357169148e-09 60317 chr4 169108548 169108548 1 + T G SKCM 169108545 + 169108525 169108565 41 TTCAGGGCATTATAAGAAAGCACTGCTTGCCATCTGTGCTG TTCAGGGCATTATAAGAAAGCACGGCTTGCCATCTGTGCTG < 41bp 0.383747887474691 0.756209880747403 0.055329084 0.13191089 prediction 0.512419761494806 Functional Gain - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169108545 chr4:169108548 nonsynonymous SNV 0.926 4 24 hm5C_associated_SNPs_107172 0 0 0 0 1 exosome 0.50023219193192 0.50023164343536 0 0 hm5C_site_60317 DeepMRMD:0;iRNA_m5C:0 60318 chr2 216176791 216176791 1 + C G rs117281478 216176790 + 216176770 216176810 41 GCTTCCTGAGCCGCCACATCCCGGCAGCCCTCCTACCTGCG GCTTCCTGAGCCGCCACATCCGGGCAGCCCTCCTACCTGCG < 41bp 0.580813677385314 0.837019354428176 0.9165548 0.93699515 prediction 0.512411354085724 Functional Gain - ATIC ENSG00000138363 UTR5 Human protein_coding chr2:216176790 chr2:216176791 . . 0 22 hm5C_associated_SNPs_107173 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0.0408807 0 hm5C_site_60318 DeepMRMD:0.0408807;iRNA_m5C:0 60319 chr19 55889220 55889220 1 + C A UCEC 55889216 + 55889196 55889236 41 GCGCTGGTCTGGACGTGCAGCGGCCTCCTCCTCCTGAGCTG GCGCTGGTCTGGACGTGCAGCGGCATCCTCCTCCTGAGCTG < 41bp 0.66197586812891 0.918175816947225 0.16269198 0.31337336 prediction 0.512399897636629 Functional Gain - TMEM190 ENSG00000160472 CDS Human protein_coding chr19:55889216 chr19:55889220 nonsynonymous SNV 0.018 2 25 hm5C_associated_SNPs_107174 0 0 0 0 1 exosome 0.50023165828631 0.500231662013028 0 7.45343542440935e-09 hm5C_site_60319 DeepMRMD:0;iRNA_m5C:7.45343542440935e-09 60320 chr6 43026993 43026993 1 + A T UCEC 43026997 - 43026977 43027017 41 CATCTTACCCGGGAAGAAGGCTGCTTCCATTCGGGCTGCCG CATCTTACCCGGGAAGAAGGCTGCATCCATTCGGGCTGCCG < 41bp 0.451782337628159 0.756196598275977 0.19665945 0.1312108 prediction 0.512393196551953 Functional Gain - MRPL2 ENSG00000112651 CDS Human protein_coding chr6:43026997 chr6:43026993 nonsynonymous SNV 0.006 0 25 hm5C_associated_SNPs_107175 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_60320 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 60321 chr1 179013161 179013161 1 + T C UCEC 179013159 + 179013139 179013179 41 GCACCCAAGCTGGACCATACCTTGCAGTCTCCCTGGGAGAT GCACCCAAGCTGGACCATACCTCGCAGTCTCCCTGGGAGAT < 41bp 0.541457697389402 0.797637196142844 0.031835616 0.1702227 prediction 0.512358997506884 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179013159 chr1:179013161 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_107176 0 0 1 0 0 Ribosome 0.500231643925558 0.500231637838803 0 0 hm5C_site_60321 DeepMRMD:0;iRNA_m5C:0 60322 chr2 202712121 202712121 1 + T G UCEC 202712119 + 202712099 202712139 41 GCTAGGGGTGCAGGCTGCATCTTTATTGAAATGTTCCAGGG GCTAGGGGTGCAGGCTGCATCTGTATTGAAATGTTCCAGGG < 41bp 0.440081163544593 0.75617739248831 0.10355097 0.27230498 prediction 0.512354784976619 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202712119 chr2:202712121 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107177 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60322 DeepMRMD:0;iRNA_m5C:0 60323 chr2 226447444 226447444 1 + C A HNSC 226447440 + 226447420 226447460 41 CCCTAAAAGTCACTCCACCTCTCCCTCCCCCGTCAGCATGG CCCTAAAAGTCACTCCACCTCTCCATCCCCCGTCAGCATGG < 41bp 0.322182811041972 0.756175943173631 0.2713008 0.9553541 prediction 0.512351886347262 Functional Gain - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226447440 chr2:226447444 synonymous SNV . 0 25 hm5C_associated_SNPs_107178 0 0 0 0 0 nucleus 0.500231643921092 0.500231643011074 0.9107082 0 hm5C_site_60323 DeepMRMD:0.9107082;iRNA_m5C:0 60324 chr11 6898490 6898490 1 + T G LUAD 6898487 + 6898467 6898507 41 GAACTGGAGGCTCTGACAGCCACTGTCCTATTCATTCTCTT GAACTGGAGGCTCTGACAGCCACGGTCCTATTCATTCTCTT < 41bp 0.370352405788344 0.756157915837801 0.05149883 0.12464774 prediction 0.512315831675602 Functional Gain - OR10A4 ENSG00000170782 CDS Human protein_coding chr11:6898487 chr11:6898490 synonymous SNV . 0 24 hm5C_associated_SNPs_107179 0 0 0 0 0 exosome 0.500228747341562 0.500231664569232 0 5.83445534019233e-06 hm5C_site_60324 DeepMRMD:0;iRNA_m5C:5.83445534019233e-06 60325 chr6 158448470 158448470 1 + C G rs115964439 158448469 + 158448449 158448489 41 GCACGGCGCCACCAGGCACCCCCGATACGCAGCGTGTTGTG GCACGGCGCCACCAGGCACCCGCGATACGCAGCGTGTTGTG < 41bp 0.469337548946272 0.756154412384941 0.25883976 0.90894914 prediction 0.512308824769881 Functional Gain - SYNJ2 ENSG00000078269 intronic Human protein_coding chr6:158448469 chr6:158448470 . . 0 22 hm5C_associated_SNPs_107180 0 0 0 0 0 Cytosol 0.500231616182436 0.500231643772562 0.81789828 5.51802519233036e-08 hm5C_site_60325 DeepMRMD:0.81789828;iRNA_m5C:5.51802519233036e-08 60326 chrX 37028191 37028191 1 + C A UCEC 37028187 + 37028167 37028207 41 CCTCCCAAGACTCGGATGTACAGTCTCCGCCCGGAGCCTCC CCTCCCAAGACTCGGATGTACAGTATCCGCCCGGAGCCTCC < 41bp 0.362916828443418 0.756145829443967 0.11145604 0.12125409 prediction 0.512291658887934 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37028187 chrX:37028191 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_107181 0 0 0 0 0 unknown 0.500231643920867 0.500231643921092 0 4.49862369578113e-13 hm5C_site_60326 DeepMRMD:0;iRNA_m5C:4.49862369578113e-13 60327 chr7 98895561 98895561 1 + T A rs559525001 98895557 + 98895537 98895577 41 GAATTCAGTTGGAACTGGCTCAGGTTAAAGCTGACATCGAC GAATTCAGTTGGAACTGGCTCAGGATAAAGCTGACATCGAC < 41bp 0.562417493348019 0.818558838742676 0.8823862 0.8895584 prediction 0.512282690789313 Functional Gain - MYH16 ENSG00000002079 ncRNA_exonic Human transcribed_unitary_pseudogene chr7:98895557 chr7:98895561 . . 0 25 hm5C_associated_SNPs_107182 0 0 0 0 1 unknown 0.500231643911838 0.500231643919939 0.0143443999999999 1.62025948213795e-11 hm5C_site_60327 DeepMRMD:0.0143443999999999;iRNA_m5C:1.62025948213795e-11 60328 chr12 7064102 7064102 1 + C T UCEC 7064101 + 7064081 7064121 41 TTTCTGTGCTCAGTGACCAGCCCAAGGCTGGCCCAGGCTCC TTTCTGTGCTCAGTGACCAGCTCAAGGCTGGCCCAGGCTCC < 41bp 0.51119722662372 0.767337493569488 0.3873052 0.47889316 prediction 0.512280533891535 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7064101 chr12:7064102 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_107183 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921091 0 0 hm5C_site_60328 DeepMRMD:0;iRNA_m5C:0 60329 chr1 11849472 11849472 1 + G C rs553811159 11849473 - 11849453 11849493 41 AGCTGGGCCCCATGCTCTGCCCCAAGCCCCCAACCCCGCGG AGCTGGGCCCCATGCTCTGCCGCAAGCCCCCAACCCCGCGG < 41bp 0.447463366797037 0.756134684975471 0.16930017 0.14295724 prediction 0.512269369950942 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11849473 chr1:11849472 nonsynonymous SNV 0.281 0 22 hm5C_associated_SNPs_107184 0 0 1 0 0 chromatin 0.500231643920613 0.500231644066046 0 2.90866442043125e-10 hm5C_site_60329 DeepMRMD:0;iRNA_m5C:2.90866442043125e-10 60330 chr9 77277478 77277478 1 + T C UCEC 77277476 + 77277456 77277496 41 TTTGCAAAGCGGATAACAGGCTTCATGGAGCTCTGTCAAAA TTTGCAAAGCGGATAACAGGCTCCATGGAGCTCTGTCAAAA < 41bp 0.583399168938594 0.839532441408556 0.05507511 0.78474945 prediction 0.512266544939924 Functional Gain - RORB ENSG00000198963 CDS Human protein_coding chr9:77277476 chr9:77277478 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_107185 0 0 0 0 2 exosome 0.500231643882609 0.500231643921093 0.5694989 7.69677654943735e-11 hm5C_site_60330 DeepMRMD:0.5694989;iRNA_m5C:7.69677654943735e-11 60331 chr2 98341683 98341683 1 + T C rs115846138 98341681 + 98341661 98341701 41 GTGAGGAGGCCGAGCGCAAACTTTACTCTGGGGCGCAGACC GTGAGGAGGCCGAGCGCAAACTCTACTCTGGGGCGCAGACC < 41bp 0.535837975682765 0.791960557416072 0.26950938 0.7145475 prediction 0.512245163466615 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98341681 chr2:98341683 synonymous SNV . 0 23 hm5C_associated_SNPs_107186 0 0 0 0 1 exosome 0.500231644421452 0.500231643921092 0.429095 0 hm5C_site_60331 DeepMRMD:0.429095;iRNA_m5C:0 60332 chr5 122515882 122515882 1 + C A UCEC 122515878 + 122515858 122515898 41 ACTGCTCCCAGTCCTTTTCCCAGCCTTCAGAACTGAGGAAC ACTGCTCCCAGTCCTTTTCCCAGCATTCAGAACTGAGGAAC < 41bp 0.35002010289924 0.756121507286754 0.85234725 0.8663315 prediction 0.512243014573509 Functional Gain - PRDM6 ENSG00000061455 CDS Human protein_coding chr5:122515878 chr5:122515882 nonsynonymous SNV 0.873 4 25 hm5C_associated_SNPs_107187 0 0 0 0 1 exosome 0.500231643921093 0.500231643904226 0.0279685000000001 0 hm5C_site_60332 DeepMRMD:0.0279685000000001;iRNA_m5C:0 60333 chr7 44153370 44153370 1 + T C rs551347012 44153368 + 44153348 44153388 41 CGCATCCGGGAGATCATGGCCATGAACGGGAACCGGCCTAT CGCATCCGGGAGATCATGGCCACGAACGGGAACCGGCCTAT < 41bp 0.544030698313057 0.800150142945039 0.18845472 0.12110418 prediction 0.512238889263964 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44153368 chr7:44153370 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_107188 0 0 0 0 0 Endoplasmic reticulum 0.500231724693076 0.500231941084847 0 4.327835414486e-07 hm5C_site_60333 DeepMRMD:0;iRNA_m5C:4.327835414486e-07 60334 chr10 71851628 71851628 1 + C A LUAD 71851627 + 71851607 71851647 41 AAACGATCCTCTCCCCACCCCCAGAGAAAAGAGGCAGGAAG AAACGATCCTCTCCCCACCCCAAGAGAAAAGAGGCAGGAAG < 41bp 0.491910639292811 0.756111653368533 0.19001201 0.2550624 prediction 0.512223306737065 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71851627 chr10:71851628 nonsynonymous SNV 0.995 2 22 hm5C_associated_SNPs_107189 0 0 0 2 1 Ribosome 0.500231643920736 0.500231643923864 0 6.25655083297261e-12 hm5C_site_60334 DeepMRMD:0;iRNA_m5C:6.25655083297261e-12 60335 chr16 88496595 88496595 1 + C G rs77951481 88496594 + 88496574 88496614 41 CCCCGCTCCCAGCAGCCACGCCGGACCCCCAAACCCCCCGC CCCCGCTCCCAGCAGCCACGCGGGACCCCCAAACCCCCCGC < 41bp 0.474319849263919 0.756110135414617 0.41068926 0.71045995 prediction 0.512220270829235 Functional Gain - ZNF469 ENSG00000225614 CDS Human protein_coding chr16:88496594 chr16:88496595 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_107190 0 0 0 0 0 exosome 0.500231676737644 0.500231643921103 0.4209199 0 hm5C_site_60335 DeepMRMD:0.4209199;iRNA_m5C:0 60336 chr17 1733324 1733324 1 + C A rs184577713 1733320 + 1733300 1733340 41 TCGGGCCAATAACTGCGCAGCGCGCGGGACCCGGGTGGGGA TCGGGCCAATAACTGCGCAGCGCGAGGGACCCGGGTGGGGA < 41bp 0.622945328641965 0.879055450866349 0.42319047 0.7970928 prediction 0.512220244448769 Functional Gain - RPA1 ENSG00000132383 UTR5 Human protein_coding chr17:1733320 chr17:1733324 . . 0 25 hm5C_associated_SNPs_107191 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0.5941856 0 hm5C_site_60336 DeepMRMD:0.5941856;iRNA_m5C:0 60337 chr19 49839538 49839538 1 + C A rs189157379 49839534 + 49839514 49839554 41 CTCAAAATGACCCTAGGGGCCGGGCGCGGTGGCTCACACCT CTCAAAATGACCCTAGGGGCCGGGAGCGGTGGCTCACACCT < 41bp 0.62952878189814 0.885634406298926 0.41997713 0.73871 prediction 0.51221124880157 Functional Gain - CD37 ENSG00000197813 ncRNA_intronic Human lincRNA chr19:49839534 chr19:49839538 . . 0 25 hm5C_associated_SNPs_107192 0 0 0 0 0 Endoplasmic reticulum 0.500231644232425 0.500231644436478 0.47742 4.08106437532751e-10 hm5C_site_60337 DeepMRMD:0.47742;iRNA_m5C:4.08106437532751e-10 60338 chr15 24921093 24921093 1 + C A LGG 24921089 + 24921069 24921109 41 GGGCCAGGGCGTGGCGCCCCCGCTCCCCTGTCCCGGGACGC GGGCCAGGGCGTGGCGCCCCCGCTACCCTGTCCCGGGACGC < 41bp 0.63127427947719 0.887365690534388 0.3702169 0.45264333 prediction 0.512182822114396 Functional Gain - NPAP1 ENSG00000185823 CDS Human protein_coding chr15:24921089 chr15:24921093 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_107193 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_60338 DeepMRMD:0;iRNA_m5C:0 60339 chr16 27374274 27374274 1 + C G rs577232756 27374273 + 27374253 27374293 41 AACCCGAGATGCCCTGTGTCCCCCAGCTCTCTGAGCCAACC AACCCGAGATGCCCTGTGTCCGCCAGCTCTCTGAGCCAACC < 41bp 0.440624817958998 0.756091392791711 0.15975285 0.26158932 prediction 0.512182785583422 Functional Gain - IL4R ENSG00000077238 CDS Human protein_coding chr16:27374273 chr16:27374274 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_107194 0 0 1 0 0 Endoplasmic reticulum 0.500231643921063 0.500231643921092 0 5.88418203051333e-14 hm5C_site_60339 DeepMRMD:0;iRNA_m5C:5.88418203051333e-14 60340 chr8 99963976 99963976 1 + C G rs142318455 99963972 + 99963952 99963992 41 GCCGCCGCTGCTCCCCTCCCCAGACACCTCTCCACGTCTCC GCCGCCGCTGCTCCCCTCCCCAGAGACCTCTCCACGTCTCC < 41bp 0.460891224936431 0.756086143673985 0.28595805 0.89214814 prediction 0.51217228734797 Functional Gain - OSR2 ENSG00000164920 UTR3 Human protein_coding chr8:99963972 chr8:99963976 . . 0 25 hm5C_associated_SNPs_107195 0 0 0 0 0 exosome 0.500231705541892 0.500231652038106 0.78429628 0 hm5C_site_60340 DeepMRMD:0.78429628;iRNA_m5C:0 60341 chr4 77033594 77033594 1 + C A STAD 77033590 + 77033570 77033610 41 AAGCCATCCTTCTGCATCCTCGGGCAAACTGCTGCTTCCAC AAGCCATCCTTCTGCATCCTCGGGAAAACTGCTGCTTCCAC < 41bp 0.633979250838983 0.890062363291353 0.90943635 0.8977616 prediction 0.512166224904741 Functional Gain - ART3 ENSG00000156219 CDS Human protein_coding chr4:77033590 chr4:77033594 synonymous SNV . 0 25 hm5C_associated_SNPs_107196 0 0 0 6 1 membrane 0.500231645120457 0.500231645190978 0 1.41041622825355e-10 hm5C_site_60341 DeepMRMD:0;iRNA_m5C:1.41041622825355e-10 60342 chr11 48146663 48146663 1 + C A LGG 48146659 + 48146639 48146679 41 CTTGTCGGGTTAGAGCCTGGCACCCGATACAATGCCACCGT CTTGTCGGGTTAGAGCCTGGCACCAGATACAATGCCACCGT < 41bp 0.333848468943609 0.756061751201047 0.027916044 0.06557864 prediction 0.512123502402094 Functional Gain - PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48146659 chr11:48146663 synonymous SNV . 0 25 hm5C_associated_SNPs_107197 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231642686195 0 0 hm5C_site_60342 DeepMRMD:0;iRNA_m5C:0 60343 chr16 68390607 68390607 1 + C G rs373518587 68390606 + 68390586 68390626 41 CCCCCCTCTCCTTGACAGGCCCGGGCAGAGCCACGCAGCGG CCCCCCTCTCCTTGACAGGCCGGGGCAGAGCCACGCAGCGG < 41bp 0.438788920068346 0.756052878845707 0.10675138 0.3726992 prediction 0.512105757691415 Functional Gain - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68390606 chr16:68390607 synonymous SNV . 0 22 hm5C_associated_SNPs_107198 0 0 1 0 1 Nucleus 0.500231644100178 0.500231643921092 0 0 hm5C_site_60343 DeepMRMD:0;iRNA_m5C:0 60344 chr19 45411026 45411026 1 + C A UCEC 45411022 + 45411002 45411042 41 ACTTGTTCCACACAGGATGCCAGGCCAAGGTGGAGCAAGCG ACTTGTTCCACACAGGATGCCAGGACAAGGTGGAGCAAGCG < 41bp 0.367846981195658 0.756051057992854 0.32637227 0.23419872 prediction 0.512102115985708 Functional Gain - APOE ENSG00000130203 CDS Human protein_coding chr19:45411022 chr19:45411026 nonsynonymous SNV 0.014 2 25 hm5C_associated_SNPs_107199 0 0 1 0 1 Cytosol 0.500231643825998 0.500231643921093 0 1.90189641813276e-10 hm5C_site_60344 DeepMRMD:0;iRNA_m5C:1.90189641813276e-10 60345 chr16 86601105 86601105 1 + C G BLCA 86601101 + 86601081 86601121 41 AGTACAGCGCGGGGATGGGCCGCTCCTACGCGCCCTACCAC AGTACAGCGCGGGGATGGGCCGCTGCTACGCGCCCTACCAC < 41bp 0.493620101026159 0.756046103690247 0.3013781 0.25203696 prediction 0.512092207380495 Functional Gain - FOXC2 ENSG00000176692 CDS Human protein_coding chr16:86601101 chr16:86601105 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_107200 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60345 DeepMRMD:0;iRNA_m5C:0 60346 chr18 61471728 61471728 1 + C A LUAD 61471727 + 61471707 61471747 41 AGAGGTCACTGAGGAGGGCACCGAGGCTACTGCTGCCACAG AGAGGTCACTGAGGAGGGCACAGAGGCTACTGCTGCCACAG < 41bp 0.501671407496224 0.757712102131308 0.33729428 0.38209185 prediction 0.512081389270168 Functional Gain - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61471727 chr18:61471728 synonymous SNV . 0 22 hm5C_associated_SNPs_107201 0 0 0 0 0 exosome 0.500231644237368 0.500231643921095 0 0 hm5C_site_60346 DeepMRMD:0;iRNA_m5C:0 60347 chr1 203032982 203032982 1 + T C UCEC 203032980 + 203032960 203033000 41 TGGCCTATGGGGACATGAACCATGAGTGGATTGGGAATGAA TGGCCTATGGGGACATGAACCACGAGTGGATTGGGAATGAA < 41bp 0.555666658378781 0.811702262883335 0.161309 0.22111642 prediction 0.512071209009108 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203032980 chr1:203032982 synonymous SNV . 0 23 hm5C_associated_SNPs_107202 0 0 1 0 1 chromatin 0.500231176447546 0.500253370508006 0 4.43881209206687e-05 hm5C_site_60347 DeepMRMD:0;iRNA_m5C:4.43881209206687e-05 60348 chr9 27524410 27524410 1 + C A UCEC 27524406 + 27524386 27524426 41 ATGGGTATATTCATTGCTGGCACCCTATCCCTGGACTGTAA ATGGGTATATTCATTGCTGGCACCATATCCCTGGACTGTAA < 41bp 0.3639675821893 0.756025753955656 0.17284817 0.5068469 prediction 0.512051507911312 Functional Gain - IFNK ENSG00000147896 CDS Human protein_coding chr9:27524406 chr9:27524410 nonsynonymous SNV 0.007 0 25 hm5C_associated_SNPs_107203 0 0 0 0 0 unknown 0.500231644634685 0.500231641223134 0.0136938 0 hm5C_site_60348 DeepMRMD:0.0136938;iRNA_m5C:0 60349 chr15 26371032 26371032 1 + C A rs140733494 26371028 + 26371008 26371048 41 CTGGCTCTGCATCCTGCTTGCAGGCGCTGGCAAGCTGGAAC CTGGCTCTGCATCCTGCTTGCAGGAGCTGGCAAGCTGGAAC < 41bp 0.425019467207986 0.756016333705872 0.89856315 0.90466845 prediction 0.512032667411743 Functional Gain - LINC00929 ENSG00000259150 ncRNA_exonic Human lincRNA chr15:26371028 chr15:26371032 . . 0 25 hm5C_associated_SNPs_107204 0 0 0 0 0 unknown 0.500231643868484 0.500231643667818 0.0122106 0 hm5C_site_60349 DeepMRMD:0.0122106;iRNA_m5C:0 60350 chr17 3627754 3627754 1 + C G rs142224121 3627750 + 3627730 3627770 41 CCTGTTCAGCTCTCTGGCCTCGCCCTGCCCCGGGTCCCCAA CCTGTTCAGCTCTCTGGCCTCGCCGTGCCCCGGGTCCCCAA < 41bp 0.568287295941101 0.824303540474994 0.18264753 0.53476715 prediction 0.512032489067787 Functional Gain - HASPIN ENSG00000177602 CDS Human protein_coding chr17:3627750 chr17:3627754 synonymous SNV . 0 25 hm5C_associated_SNPs_107205 0 0 1 0 0 unknown 0.500231643920152 0.500231643915228 0.0695342999999999 0 hm5C_site_60350 DeepMRMD:0.0695342999999999;iRNA_m5C:0 60351 chr9 84547851 84547851 1 + C G LUSC 84547850 + 84547830 84547870 41 AGGATGCTGTGGGGCCTTCCCCGCAAGATCCGTGAACCCAT AGGATGCTGTGGGGCCTTCCCGGCAAGATCCGTGAACCCAT < 41bp 0.470513860300149 0.756007928820862 0.23050576 0.4393225 prediction 0.512015857641724 Functional Gain - SPATA31D4 ENSG00000189357 ncRNA_exonic Human protein_coding chr9:84547850 chr9:84547851 . . 0 22 hm5C_associated_SNPs_107206 0 0 0 0 0 exosome 0.500231643923405 0.500231643921092 0 0 hm5C_site_60351 DeepMRMD:0;iRNA_m5C:0 60352 chr8 22458457 22458457 1 + C G rs145988500 22458453 + 22458433 22458473 41 CCTGGAGTCACCAGCACCTACAGACGGATCCCCGACGCTGC CCTGGAGTCACCAGCACCTACAGAGGGATCCCCGACGCTGC < 41bp 0.580458857940118 0.836464176987699 0.73109907 0.8969376 prediction 0.512010638095162 Functional Gain - C8orf58 ENSG00000241852;ENSG00000248235 CDS Human other chr8:22458453 chr8:22458457 nonsynonymous SNV 0.985 3 25 hm5C_associated_SNPs_107207 0 0 0 0 1 exosome 0.500231643921096 0.500231643921144 0.33167706 9.76996261670138e-14 hm5C_site_60352 DeepMRMD:0.33167706;iRNA_m5C:9.76996261670138e-14 60353 chr5 140554466 140554466 1 + C A COAD 140554462 + 140554442 140554482 41 GCGGCCCCGGACCAGGCCAACTCGCTCACCGTCTACCTGGT GCGGCCCCGGACCAGGCCAACTCGATCACCGTCTACCTGGT < 41bp 0.660908687823592 0.916903185231749 0.5585048 0.8092181 prediction 0.511988994816314 Functional Gain - PCDHB7 ENSG00000113212 CDS Human protein_coding chr5:140554462 chr5:140554466 nonsynonymous SNV 0.221 3 25 hm5C_associated_SNPs_107208 0 0 0 0 0 exosome 0.50023164392117 0.500231643927308 0.5014266 1.22759580278853e-11 hm5C_site_60353 DeepMRMD:0.5014266;iRNA_m5C:1.22759580278853e-11 60354 chr9 34646774 34646774 1 + C A STAD 34646770 + 34646750 34646790 41 GCGGACGCCGCAGCAGCAACCTTCCGGGCAAACGGTAACTG GCGGACGCCGCAGCAGCAACCTTCAGGGCAAACGGTAACTG < 41bp 0.353507399134289 0.755989674904685 0.06789106 0.059182346 prediction 0.511979349809371 Functional Gain - GALT ENSG00000213930;ENSG00000258728 CDS Human other chr9:34646770 chr9:34646774 synonymous SNV . 0 25 hm5C_associated_SNPs_107209 0 0 1 0 2 Cytosol 0.500231643947576 0.500231640622067 0 0 hm5C_site_60354 DeepMRMD:0;iRNA_m5C:0 60355 chr3 9786133 9786133 1 + C T SKCM 9786132 + 9786112 9786152 41 AGCGCAAGCGGGGTAGGAGCCCCCGGCCCAGTTCGAGCTCA AGCGCAAGCGGGGTAGGAGCCTCCGGCCCAGTTCGAGCTCA < 41bp 0.498561422946357 0.755988995044951 0.3748995 0.6137541 prediction 0.511977990089902 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9786132 chr3:9786133 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_107210 0 0 1 0 1 Nucleus 0.500231644222664 0.500231642655029 0.2275082 0 hm5C_site_60355 DeepMRMD:0.2275082;iRNA_m5C:0 60356 chr19 30935396 30935396 1 + T A HNSC 30935392 + 30935372 30935412 41 GTGCACGTTGTGCGACTTCGCGGCTTCGCAGGAGGAGGAGC GTGCACGTTGTGCGACTTCGCGGCATCGCAGGAGGAGGAGC < 41bp 0.608678133477751 0.864665739401301 0.28235936 0.77092373 prediction 0.5119752118471 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30935392 chr19:30935396 synonymous SNV . 0 25 hm5C_associated_SNPs_107211 0 0 1 0 0 exosome 0.500231679981507 0.500231262031661 0.54184746 0 hm5C_site_60356 DeepMRMD:0.54184746;iRNA_m5C:0 60357 chr1 156622260 156622260 1 + C A STAD 156622256 + 156622236 156622276 41 GCCAGCAGCCCAGGAGGAGTCACTCTCCCAGGCGCCAGCAA GCCAGCAGCCCAGGAGGAGTCACTATCCCAGGCGCCAGCAA < 41bp 0.343722516699563 0.75597056801683 0.43458903 0.45498982 prediction 0.51194113603366 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156622256 chr1:156622260 synonymous SNV . 0 25 hm5C_associated_SNPs_107212 0 0 0 0 0 chromatin 0.500231643906255 0.500225368859002 0 0 hm5C_site_60357 DeepMRMD:0;iRNA_m5C:0 60358 chr1 158324176 158324176 1 + C A COAD 158324172 + 158324152 158324192 41 TTCCCTCTCTCTCAGCTCCCCAGGCTCTACAATCCTATCAT TTCCCTCTCTCTCAGCTCCCCAGGATCTACAATCCTATCAT < 41bp 0.419372031899006 0.755942906320667 0.4077167 0.7321908 prediction 0.511885812641334 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158324172 chr1:158324176 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_107213 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.4643816 0 hm5C_site_60358 DeepMRMD:0.4643816;iRNA_m5C:0 60359 chr3 47451454 47451454 1 + C T BRCA 47451453 + 47451433 47451473 41 GCCGCCGCCACGGCCCACAGCCCCAAAGCCGCTGCTGCCCC GCCGCCGCCACGGCCCACAGCTCCAAAGCCGCTGCTGCCCC < 41bp 0.490054796890586 0.75594155429437 0.12950286 0.9257005 prediction 0.51188310858874 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47451453 chr3:47451454 synonymous SNV . 0 22 hm5C_associated_SNPs_107214 0 0 0 0 1 chromatin 0.50023163365817 0.500231643920681 0.851401 2.05250223483944e-08 hm5C_site_60359 DeepMRMD:0.851401;iRNA_m5C:2.05250223483944e-08 60360 chr11 128782002 128782002 1 + T C rs7118833 128782000 + 128781980 128782020 41 TGTCTCCTCTGATCATCTCCCATGAGATCAACCAGAAGAGC TGTCTCCTCTGATCATCTCCCACGAGATCAACCAGAAGAGC < 41bp 0.536362634997985 0.792302016784917 0.1309698 0.14353946 prediction 0.511878763573863 Functional Gain - KCNJ5 ENSG00000120457 CDS Human protein_coding chr11:128782000 chr11:128782002 synonymous SNV . 0 23 hm5C_associated_SNPs_107215 3 0 0 0 0 Ribosome 0.500231643920827 0.500231643919978 0 0 hm5C_site_60360 DeepMRMD:0;iRNA_m5C:0 not specified not specified 60361 chr17 56429737 56429737 1 + C G rs549204874 56429736 + 56429716 56429756 41 GCGCGTCGCAGCCACCTGAGCCCGCCGAGGGCGCGGCGGAG GCGCGTCGCAGCCACCTGAGCGCGCCGAGGGCGCGGCGGAG < 41bp 0.561009619214721 0.816941057048933 0.6518974 0.7170112 prediction 0.511862875668423 Functional Gain - TSPOAP1-AS1 ENSG00000265148 ncRNA_exonic Human antisense chr17:56429736 chr17:56429737 . . 0 22 hm5C_associated_SNPs_107216 0 0 0 0 0 unknown 0.500231643921092 0.500231611305131 0.1302276 0 hm5C_site_60361 DeepMRMD:0.1302276;iRNA_m5C:0 60362 chr1 247587856 247587856 1 + C A PRAD 247587855 + 247587835 247587875 41 CATCCTCGGCATGTGGAGATCCTGGGTTTCTCCGAGGCCAA CATCCTCGGCATGTGGAGATCATGGGTTTCTCCGAGGCCAA < 41bp 0.499656662723079 0.755916736416712 0.49828583 0.7583638 prediction 0.511833472833425 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247587855 chr1:247587856 nonsynonymous SNV 0.946 3 22 hm5C_associated_SNPs_107217 0 0 0 0 0 Nucleus 0.500231643921027 0.500231643921092 0.5167276 1.31450406115619e-13 hm5C_site_60362 DeepMRMD:0.5167276;iRNA_m5C:1.31450406115619e-13 60363 chr1 4772050 4772050 1 + C A rs148753165 4772049 + 4772029 4772069 41 GCTCGCCGTGGACCTGCCCGCCTGTGAGGCCCTGGGCCCGG GCTCGCCGTGGACCTGCCCGCATGTGAGGCCCTGGGCCCGG < 41bp 0.507561714795915 0.763472751690724 0.055372506 0.38892227 prediction 0.511822073789618 Functional Gain - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4772049 chr1:4772050 synonymous SNV . 0 22 hm5C_associated_SNPs_107218 0 0 0 0 1 exosome 0.500231643921089 0.500231643650604 0 0 hm5C_site_60363 DeepMRMD:0;iRNA_m5C:0 60364 chr10 11797517 11797517 1 + C G rs145453628 11797513 + 11797493 11797533 41 CAGCTGCGACATTGCCGTGGCGAGCGACAAGTCCTCTTTTG CAGCTGCGACATTGCCGTGGCGAGGGACAAGTCCTCTTTTG < 41bp 0.555958324312894 0.811845654533982 0.8399114 0.9221337 prediction 0.511774660442177 Functional Gain - ECHDC3 ENSG00000134463 CDS Human protein_coding chr10:11797513 chr10:11797517 nonsynonymous SNV 0.943 4 25 hm5C_associated_SNPs_107219 0 0 0 0 1 Cytosol 0.500231658848108 0.500231643921092 0.1644446 0 hm5C_site_60364 DeepMRMD:0.1644446;iRNA_m5C:0 60365 chr12 11084051 11084051 1 + C G rs149577929 11084047 + 11084027 11084067 41 AGGCTCAGTCCTGCCTCACACTAGCATTTCAAGTCCAGTAT AGGCTCAGTCCTGCCTCACACTAGGATTTCAAGTCCAGTAT < 41bp 0.480039843321192 0.755874282475821 0.107468724 0.052393347 prediction 0.511748564951642 Functional Gain - PRH1-PRR4 ENSG00000134551 intronic Human protein_coding chr12:11084047 chr12:11084051 . . 0 25 hm5C_associated_SNPs_107220 0 0 0 3 0 exosome 0.50023335952965 0.500231645248092 0 0 hm5C_site_60365 DeepMRMD:0;iRNA_m5C:0 60366 chr10 25464825 25464825 1 + C A UCEC 25464821 + 25464801 25464841 41 AGGACGACCTGGATTGGTACCAGGCGCTGGTGTGGAGCCTT AGGACGACCTGGATTGGTACCAGGAGCTGGTGTGGAGCCTT < 41bp 0.641794217491161 0.897660697967527 0.8805725 0.89514613 prediction 0.511732960952731 Functional Gain - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25464821 chr10:25464825 nonsynonymous SNV 0.993 4 25 hm5C_associated_SNPs_107221 0 0 0 0 0 Endoplasmic reticulum 0.500234081061154 0.500231645171487 0.02914726 0 hm5C_site_60366 DeepMRMD:0.02914726;iRNA_m5C:0 60367 chr3 148601523 148601523 1 + T C PRAD 148601521 + 148601501 148601541 41 CTGAATGAAATCAAGGTTTACATCACCTTCCATTCCTACTC CTGAATGAAATCAAGGTTTACACCACCTTCCATTCCTACTC < 41bp 0.469659967518936 0.755860158939863 0.019010663 0.008859783 prediction 0.511720317879727 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148601521 chr3:148601523 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_107222 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_60367 DeepMRMD:0;iRNA_m5C:0 60368 chr16 30680217 30680217 1 + T C COAD 30680215 + 30680195 30680235 41 TTCCTGCCTGGGTCCGGCCCCCTGAGGCCGCCCGGACTCCA TTCCTGCCTGGGTCCGGCCCCCCGAGGCCGCCCGGACTCCA < 41bp 0.53262437372995 0.788484025555405 0.26798055 0.1570195 prediction 0.511719303650911 Functional Gain - FBRS ENSG00000156860 CDS Human protein_coding chr16:30680215 chr16:30680217 synonymous SNV . 0 23 hm5C_associated_SNPs_107223 0 0 1 0 1 chromatin 0.500231647869826 0.500231643798574 0 0 hm5C_site_60368 DeepMRMD:0;iRNA_m5C:0 60369 chr14 65209938 65209938 1 + C G ACC 65209937 + 65209917 65209957 41 GCTCTGCTCCAAGTATGCCTCCCGCGATGAGGCACGCCGAG GCTCTGCTCCAAGTATGCCTCGCGCGATGAGGCACGCCGAG < 41bp 0.447131423272651 0.755858999055923 0.25735223 0.5115219 prediction 0.511717998111847 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65209937 chr14:65209938 synonymous SNV . 0 22 hm5C_associated_SNPs_107224 0 0 0 0 0 Nucleus 0.500231643921092 0.500231645382628 0.0230437999999999 2.92307245075563e-09 hm5C_site_60369 DeepMRMD:0.0230437999999999;iRNA_m5C:2.92307245075563e-09 60370 chr7 36193946 36193946 1 + C G KIRC 36193942 + 36193922 36193962 41 TCCTGGCGGACCATGGGGAGCACCCTGGGCTGCCACCGCTC TCCTGGCGGACCATGGGGAGCACCGTGGGCTGCCACCGCTC < 41bp 0.458488486458644 0.755854020364925 0.49403656 0.79802823 prediction 0.51170804072985 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36193942 chr7:36193946 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_107225 0 0 1 0 0 cytosol 0.500231643921088 0.500231643944117 0.59605646 4.60578242211795e-11 hm5C_site_60370 DeepMRMD:0.59605646;iRNA_m5C:4.60578242211795e-11 60371 chr4 119631352 119631352 1 + T A THCA 119631348 + 119631328 119631368 41 AGGTGGAGGAAGAGGTGGAACTTCTGCTGGCCGTGGACGAG AGGTGGAGGAAGAGGTGGAACTTCAGCTGGCCGTGGACGAG < 41bp 0.430067229610814 0.755838385994156 0.3654955 0.42516702 prediction 0.511676771988312 Functional Gain - METTL14 ENSG00000145388 CDS Human protein_coding chr4:119631348 chr4:119631352 synonymous SNV . 0 25 hm5C_associated_SNPs_107226 0 0 1 0 0 Nucleus 0.500237741680068 0.500231972387741 0 0 hm5C_site_60371 DeepMRMD:0;iRNA_m5C:0 60372 chr1 92789806 92789806 1 + T G rs143344868 92789803 + 92789783 92789823 41 TTTAGGGGCTCAGGTACAGCCATTAAACCACTGCCAAGTTA TTTAGGGGCTCAGGTACAGCCATGAAACCACTGCCAAGTTA < 41bp 0.392423928205187 0.755825333188824 0.81000054 0.51315176 prediction 0.511650666377648 Functional Gain - RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92789803 chr1:92789806 nonsynonymous SNV 0.985 0 24 hm5C_associated_SNPs_107227 0 0 1 5 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_60372 DeepMRMD:0;iRNA_m5C:0 60373 chr5 140615413 140615413 1 + C G rs3733683 140615412 + 140615392 140615432 41 CGTGACCGACTTGGGGACACCCAGGCTGAAAACCGAGCACA CGTGACCGACTTGGGGACACCGAGGCTGAAAACCGAGCACA < 41bp 0.546638788560232 0.802446548062494 0.35691 0.8513894 prediction 0.511615519004526 Functional Gain - PCDHB18P ENSG00000146001 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:140615412 chr5:140615413 . . 0 22 hm5C_associated_SNPs_107228 0 0 0 0 0 unknown 0.500231656387386 0.500231644043058 0.7027788 0 hm5C_site_60373 DeepMRMD:0.7027788;iRNA_m5C:0 60374 chr12 56515331 56515331 1 + C A COAD 56515327 + 56515307 56515347 41 CTACAGCCTCGTCCAGTGTCCCAGCAAGAACTGGTGGCCCC CTACAGCCTCGTCCAGTGTCCCAGAAAGAACTGGTGGCCCC < 41bp 0.352216319910105 0.755801958481327 0.31892574 0.26194942 prediction 0.511603916962654 Functional Gain - ZC3H10 ENSG00000135482 CDS Human protein_coding chr12:56515327 chr12:56515331 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_107229 0 0 1 0 0 Ribosome 0.500231643923409 0.500231643931182 0 1.55464530138261e-11 hm5C_site_60374 DeepMRMD:0;iRNA_m5C:1.55464530138261e-11 60375 chr10 11908739 11908739 1 + C A rs149002089 11908735 + 11908715 11908755 41 CGACTTAGTGCAGCCAGCACCTGGCGCCGGGGAAGCCGAGG CGACTTAGTGCAGCCAGCACCTGGAGCCGGGGAAGCCGAGG < 41bp 0.668187127829354 0.923985489121312 0.24106482 0.55266356 prediction 0.511596722583916 Functional Gain - PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11908735 chr10:11908739 synonymous SNV . 0 25 hm5C_associated_SNPs_107230 0 0 0 0 1 chromatin 0.500228860950724 0.500231462933071 0.10532712 5.20396469338991e-06 hm5C_site_60375 DeepMRMD:0.10532712;iRNA_m5C:5.20396469338991e-06 60376 chr17 27075086 27075086 1 + C G LUSC 27075085 + 27075065 27075105 41 ATTCCCTGCCCTAATCGCTGCCCCATGAAGCTGAGCCGCCG ATTCCCTGCCCTAATCGCTGCGCCATGAAGCTGAGCCGCCG < 41bp 0.435440472237425 0.755794967050414 0.16221377 0.12295732 prediction 0.511589934100828 Functional Gain - TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27075085 chr17:27075086 nonsynonymous SNV 0.978 0 22 hm5C_associated_SNPs_107231 0 0 1 0 1 Ribosome 0.5002316439221 0.500231723548321 0 1.59252442566427e-07 hm5C_site_60376 DeepMRMD:0;iRNA_m5C:1.59252442566427e-07 60377 chr17 40001888 40001888 1 + C A LUSC 40001884 + 40001864 40001904 41 ATGGGAGGATTTGATGGCTACGTGCGTCTAAACACTGCTGA ATGGGAGGATTTGATGGCTACGTGAGTCTAAACACTGCTGA < 41bp 0.356931085184569 0.755772697641921 0.026925087 0.085231274 prediction 0.511545395283842 Functional Gain - KLHL10 ENSG00000161594 CDS Human protein_coding chr17:40001884 chr17:40001888 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_107232 0 0 0 0 0 exosome 0.500231643930825 0.500231670375662 0 5.28896737517215e-08 hm5C_site_60377 DeepMRMD:0;iRNA_m5C:5.28896737517215e-08 60378 chr19 35940974 35940974 1 + T G LIHC 35940971 + 35940951 35940991 41 CTTTCCCCGTGCAGTACAAGCTCTCCCGCCGGCCTCTGTAT CTTTCCCCGTGCAGTACAAGCTCGCCCGCCGGCCTCTGTAT < 41bp 0.354817144360859 0.755765844756859 0.13335311 0.19305748 prediction 0.511531689513718 Functional Gain - FFAR2 ENSG00000126262 CDS Human protein_coding chr19:35940971 chr19:35940974 nonsynonymous SNV 0.801 0 24 hm5C_associated_SNPs_107233 0 0 0 0 0 exosome 0.500231690518909 0.500231655540482 0 0 hm5C_site_60378 DeepMRMD:0;iRNA_m5C:0 60379 chr17 75525973 75525973 1 + C A rs114007449 75525969 + 75525949 75525989 41 TATATTAAATCCCTAAGCCCCTGGCTGGGCGTGGTGGCGAG TATATTAAATCCCTAAGCCCCTGGATGGGCGTGGTGGCGAG < 41bp 0.406761116665689 0.755764552115735 0.1744977 0.49783537 prediction 0.51152910423147 Functional Gain - SEPT9;LOC100507351 ENSG00000267665 ncRNA_exonic Human lincRNA chr17:75525969 chr17:75525973 . . 0 25 hm5C_associated_SNPs_107234 0 0 0 0 0 unknown 0.500231643921092 0.500231643921091 0 0 hm5C_site_60379 DeepMRMD:0;iRNA_m5C:0 60380 chr15 24921968 24921968 1 + C G BLCA 24921967 + 24921947 24921987 41 TCCAAGGAGCGCTGCTCCTCCCAGAGCTGCCCGCAACAGGC TCCAAGGAGCGCTGCTCCTCCGAGAGCTGCCCGCAACAGGC < 41bp 0.592880670921165 0.84863954880678 0.86852896 0.91217613 prediction 0.511517755771229 Functional Gain - NPAP1 ENSG00000185823 CDS Human protein_coding chr15:24921967 chr15:24921968 synonymous SNV . 0 22 hm5C_associated_SNPs_107235 0 0 0 0 0 Nucleus 0.5002316471861 0.500231643982631 0.0872943399999999 0 hm5C_site_60380 DeepMRMD:0.0872943399999999;iRNA_m5C:0 60381 chr7 5112810 5112810 1 + C G rs141207342 5112809 + 5112789 5112829 41 GTGCCCTCTCCAGACCCCACCCCCAGATGCATTTATTAGAA GTGCCCTCTCCAGACCCCACCGCCAGATGCATTTATTAGAA < 41bp 0.487281757014794 0.755751432705377 0.09523103 0.87705636 prediction 0.511502865410754 Functional Gain - RBAKDN ENSG00000272968 CDS Human protein_coding chr7:5112809 chr7:5112810 synonymous SNV . 0 22 hm5C_associated_SNPs_107236 0 0 0 0 0 unknown 0.500231643921092 0.500231643919954 0.75411272 0 hm5C_site_60381 DeepMRMD:0.75411272;iRNA_m5C:0 60382 chr20 55966699 55966699 1 + C G rs371553583 55966698 + 55966678 55966718 41 TCCCGCGGCCCCTGGCCGCCCCCGGCGCCATGCACGGCTCG TCCCGCGGCCCCTGGCCGCCCGCGGCGCCATGCACGGCTCG < 41bp 0.581307518391379 0.837053985281292 0.7838008 0.88213855 prediction 0.511492933779825 Functional Gain - RBM38 ENSG00000132819 CDS Human protein_coding chr20:55966698 chr20:55966699 nonsynonymous SNV 0.612 0 22 hm5C_associated_SNPs_107237 0 0 1 0 0 Ribosome 0.500231212606075 0.500231643921092 0.1966755 8.62630034959011e-07 hm5C_site_60382 DeepMRMD:0.1966755;iRNA_m5C:8.62630034959011e-07 60383 chr19 5684914 5684914 1 + C G BLCA 5684913 + 5684893 5684933 41 ATTGGGATGACAACTTCGACCCAGGTGAGCACCTGGGGTTG ATTGGGATGACAACTTCGACCGAGGTGAGCACCTGGGGTTG < 41bp 0.575524338880268 0.831263521562854 0.8388785 0.9123388 prediction 0.511478365365171 Functional Gain - HSD11B1L ENSG00000167733 CDS Human protein_coding chr19:5684913 chr19:5684914 nonsynonymous SNV 0.229 3 22 hm5C_associated_SNPs_107238 0 0 0 0 2 exosome 0.500231643921004 0.500231643921092 0.1469206 1.774136393351e-13 hm5C_site_60383 DeepMRMD:0.1469206;iRNA_m5C:1.774136393351e-13 60384 chr1 161069201 161069201 1 + C A UCEC 161069200 + 161069180 161069220 41 GTGCGGCCCTGCTCCAAACTCCTGGACCCCATCCAGGTCAT GTGCGGCCCTGCTCCAAACTCATGGACCCCATCCAGGTCAT < 41bp 0.49342356832443 0.75573548341229 0.22881788 0.36556274 prediction 0.511470966824581 Functional Gain - KLHDC9 ENSG00000162755 CDS Human protein_coding chr1:161069200 chr1:161069201 nonsynonymous SNV 0.708 2 22 hm5C_associated_SNPs_107239 0 0 1 0 2 chromatin 0.500231640926817 0.500231643450654 0 5.04767316833465e-09 hm5C_site_60384 DeepMRMD:0;iRNA_m5C:5.04767316833465e-09 60385 chrX 34961704 34961704 1 + C A LUAD 34961703 + 34961683 34961723 41 TCATCTCCGCGTGGATCCTCCCGAGACTGGAGTGTCCCATC TCATCTCCGCGTGGATCCTCCAGAGACTGGAGTGTCCCATC < 41bp 0.526273509562293 0.782006711071314 0.88063914 0.88597333 prediction 0.511466403018041 Functional Gain - FAM47B ENSG00000189132 CDS Human protein_coding chrX:34961703 chrX:34961704 synonymous SNV . 0 22 hm5C_associated_SNPs_107240 0 0 0 0 0 unknown 0.500231558900156 0.50023181754404 0.01066838 5.17287768397878e-07 hm5C_site_60385 DeepMRMD:0.01066838;iRNA_m5C:5.17287768397878e-07 60386 chr19 11486219 11486219 1 + C G HNSC 11486218 + 11486198 11486238 41 TTCCAGTACCCACCCTCAACCCGAGAGCTTTTCCGGCTCCT TTCCAGTACCCACCCTCAACCGGAGAGCTTTTCCGGCTCCT < 41bp 0.435105618679741 0.755708610683485 0.3149783 0.8728851 prediction 0.511417221366971 Functional Gain - SWSAP1 ENSG00000173928 CDS Human protein_coding chr19:11486218 chr19:11486219 nonsynonymous SNV 0.553 0 22 hm5C_associated_SNPs_107241 0 0 1 0 1 exosome 0.500231643921054 0.500231643898019 0.7457702 0 hm5C_site_60386 DeepMRMD:0.7457702;iRNA_m5C:0 60387 chr7 72419442 72419442 1 + C A rs77088979 72419441 + 72419421 72419461 41 CGCCCTGTACCTGAAGGCGCCCGGGTTCTGCTGCAGCGCAT CGCCCTGTACCTGAAGGCGCCAGGGTTCTGCTGCAGCGCAT < 41bp 0.49873437282565 0.755704879259765 0.9159738 0.9387684 prediction 0.51140975851953 Functional Gain - NSUN5P2 ENSG00000106133 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:72419441 chr7:72419442 . . 0 22 hm5C_associated_SNPs_107242 0 0 0 0 0 unknown 0.500231643920504 0.500231645677863 0.0455892 3.51471740600573e-09 hm5C_site_60387 DeepMRMD:0.0455892;iRNA_m5C:3.51471740600573e-09 60388 chr12 56548603 56548603 1 + T A COAD 56548599 + 56548579 56548619 41 TGCTTTTTTCTTCCACAGATCGAGTTTAACAAGGACCAGCT TGCTTTTTTCTTCCACAGATCGAGATTAACAAGGACCAGCT < 41bp 0.438444543343075 0.755701749608414 0.45861837 0.904093 prediction 0.511403499216827 Functional Gain - MYL6B ENSG00000196465 CDS Human protein_coding chr12:56548599 chr12:56548603 nonsynonymous SNV 1.000 3 25 hm5C_associated_SNPs_107243 0 0 0 0 1 Cytosol 0.500231643921095 0.500231643921093 0.808186 0 hm5C_site_60388 DeepMRMD:0.808186;iRNA_m5C:0 60389 chr3 138174129 138174129 1 + C A HNSC 138174128 + 138174108 138174148 41 ATCCGAGAGAAGAGCATCCACCTGAGGACCTTTACCTTTAC ATCCGAGAGAAGAGCATCCACATGAGGACCTTTACCTTTAC < 41bp 0.520030063946985 0.775725698916713 0.100130886 0.12633803 prediction 0.511391269939457 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138174128 chr3:138174129 nonsynonymous SNV 0.707 5 22 hm5C_associated_SNPs_107244 0 0 0 0 2 nucleoplasm 0.500231643921093 0.500231643921085 0 0 hm5C_site_60389 DeepMRMD:0;iRNA_m5C:0 60390 chr20 30530919 30530919 1 + T A rs181933010 30530915 + 30530895 30530935 41 GCACAGCACCTCACAGCATTCGCCTCCCCACCTCCAGCCTG GCACAGCACCTCACAGCATTCGCCACCCCACCTCCAGCCTG < 41bp 0.477044942176283 0.755691735250202 0.06919491 0.11387205 prediction 0.511383470500404 Functional Gain - TTLL9 ENSG00000131044 intronic Human protein_coding chr20:30530915 chr20:30530919 . . 0 25 hm5C_associated_SNPs_107245 0 0 0 0 0 exosome 0.500231643921093 0.500231643921094 0 1.11022302462516e-15 hm5C_site_60390 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 60391 chr16 20497948 20497948 1 + C A STAD 20497944 + 20497924 20497964 41 CTGTCACAGGGAAAATTCAACGAGCCAAGCTTCGAGACAAG CTGTCACAGGGAAAATTCAACGAGACAAGCTTCGAGACAAG < 41bp 0.372141326074555 0.755679051465084 0.3776998 0.53566134 prediction 0.511358102930167 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20497944 chr16:20497948 nonsynonymous SNV 0.035 0 25 hm5C_associated_SNPs_107246 0 0 0 0 1 exosome 0.500218790576277 0.500231643991403 0.07132268 2.57068302504937e-05 hm5C_site_60391 DeepMRMD:0.07132268;iRNA_m5C:2.57068302504937e-05 60392 chr6 35773664 35773664 1 + C A STAD 35773660 + 35773640 35773680 41 TTCTCCTACTGCGTGGGTAACGTGCTGTCCTCCGAGCTCAT TTCTCCTACTGCGTGGGTAACGTGATGTCCTCCGAGCTCAT < 41bp 0.355382112137336 0.755678340807132 0.4395664 0.7817582 prediction 0.511356681614264 Functional Gain - LHFPL5 ENSG00000197753 CDS Human protein_coding chr6:35773660 chr6:35773664 nonsynonymous SNV 0.973 3 25 hm5C_associated_SNPs_107247 0 0 0 0 0 exosome 0.50023164392098 0.500231643814413 0.5635164 0 hm5C_site_60392 DeepMRMD:0.5635164;iRNA_m5C:0 60393 chr19 35524595 35524595 1 + C A OV 35524591 + 35524571 35524611 41 CTGCTCTTCTTCGAAAACTACGAGCACAACACCAGCGTCGT CTGCTCTTCTTCGAAAACTACGAGAACAACACCAGCGTCGT < 41bp 0.343310777570258 0.755673971937342 0.31473216 0.3556564 prediction 0.511347943874685 Functional Gain - SCN1B ENSG00000105711 CDS Human protein_coding chr19:35524591 chr19:35524595 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_107248 0 0 1 0 1 exosome 0.500231643850489 0.500231643927905 0 1.54831258925014e-10 hm5C_site_60393 DeepMRMD:0;iRNA_m5C:1.54831258925014e-10 60394 chr2 85361161 85361161 1 + T C rs544262877 85361159 + 85361139 85361179 41 GCGGAGAGGCGCCCGCAGCCCGTCCGGGACACTTTCCAGAA GCGGAGAGGCGCCCGCAGCCCGCCCGGGACACTTTCCAGAA < 41bp 0.511704005108802 0.767371846511658 0.17100328 0.20956376 prediction 0.511335682805711 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85361159 chr2:85361161 nonsynonymous SNV 0.997 1 23 hm5C_associated_SNPs_107249 0 0 0 0 2 Endoplasmic reticulum 0.500231643921093 0.500231643921092 0 0 hm5C_site_60394 DeepMRMD:0;iRNA_m5C:0 60395 chr1 14142943 14142943 1 + C T SKCM 14142942 + 14142922 14142962 41 CTACAGCCTCCGCTTGGCGTCCCGATGCTCTCCACCAGCGG CTACAGCCTCCGCTTGGCGTCTCGATGCTCTCCACCAGCGG < 41bp 0.496460910221476 0.755665045353948 0.049291223 0.8205901 prediction 0.511330090707895 Functional Gain - PRDM2 ENSG00000116731 CDS Human protein_coding chr1:14142942 chr1:14142943 nonsynonymous SNV 0.709 1 22 hm5C_associated_SNPs_107250 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921084 0.6411802 0 hm5C_site_60395 DeepMRMD:0.6411802;iRNA_m5C:0 60396 chr14 23844979 23844979 1 + C A rs1124053 23844978 + 23844958 23844998 41 CACAACCAGACTGTCTTCTACCGGCGGCCATGCCATGGCGA CACAACCAGACTGTCTTCTACAGGCGGCCATGCCATGGCGA < 41bp 0.506583083984581 0.762243596482523 0.91018045 0.83425176 prediction 0.511321024995883 Functional Gain - IL25 ENSG00000166090 CDS Human protein_coding chr14:23844978 chr14:23844979 synonymous SNV . 0 22 hm5C_associated_SNPs_107251 0 0 0 0 0 exosome 0.500231643837633 0.500229927925181 0 0 hm5C_site_60396 DeepMRMD:0;iRNA_m5C:0 60397 chr11 61537745 61537745 1 + C A UCEC 61537744 + 61537724 61537764 41 ACCTCCTGCGCACGATAACCCCTGAGACACTGTGCCACGTG ACCTCCTGCGCACGATAACCCATGAGACACTGTGCCACGTG < 41bp 0.507348194347923 0.763002080789721 0.23784158 0.30494517 prediction 0.511307772883597 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61537744 chr11:61537745 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_107252 0 0 0 0 1 chromatin 0.500231643921438 0.500200670063342 0 0 hm5C_site_60397 DeepMRMD:0;iRNA_m5C:0 60398 chr1 183205648 183205648 1 + C G LUSC 183205644 + 183205624 183205664 41 AGTTGACAAGGGAGGCCACTCAAGCGGAAATTGAAGCAGAT AGTTGACAAGGGAGGCCACTCAAGGGGAAATTGAAGCAGAT < 41bp 0.467228273817637 0.755646130464261 0.8547205 0.9296291 prediction 0.511292260928522 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183205644 chr1:183205648 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_107253 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.1498172 0 hm5C_site_60398 DeepMRMD:0.1498172;iRNA_m5C:0 60399 chr8 79515931 79515931 1 + T G rs535816752 79515929 + 79515909 79515949 41 CCCTGGTAAACTGTTTAAACCATCAAACCCCTACAGTCAGT CCCTGGTAAACTGTTTAAACCAGCAAACCCCTACAGTCAGT < 41bp 0.47409355618063 0.755646090015338 0.039703935 0.08992192 prediction 0.511292180030676 Functional Gain - PKIA ENSG00000171033 UTR3 Human protein_coding chr8:79515929 chr8:79515931 . . 0 23 hm5C_associated_SNPs_107254 0 0 1 0 0 Ribosome 0.500231643921096 0.500231643921093 0 0 hm5C_site_60399 DeepMRMD:0;iRNA_m5C:0 60400 chr19 11560203 11560203 1 + C G rs368935929 11560202 + 11560182 11560222 41 GCCACCGCCTGAAGCACCCACCGAAGACGACCATGACGAGC GCCACCGCCTGAAGCACCCACGGAAGACGACCATGACGAGC < 41bp 0.595110379134439 0.850753966544214 0.13975564 0.40077496 prediction 0.511287174819548 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11560202 chr19:11560203 synonymous SNV . 0 22 hm5C_associated_SNPs_107255 0 0 1 0 1 Nucleus 0.50021753221567 0.50023164469425 0 2.8224957159706e-05 hm5C_site_60400 DeepMRMD:0;iRNA_m5C:2.8224957159706e-05 60401 chr1 35251748 35251748 1 + C G rs142162514 35251747 + 35251727 35251767 41 GACTAGAGGTTCTGGAGATACCCAGAGGTCCCCCAGGTCAT GACTAGAGGTTCTGGAGATACGCAGAGGTCCCCCAGGTCAT < 41bp 0.496872528812994 0.755643365786782 0.021393508 0.07380217 prediction 0.511286731573564 Functional Gain - GJB3 ENSG00000255811 ncRNA_intronic Human antisense chr1:35251747 chr1:35251748 . . 0 22 hm5C_associated_SNPs_107256 0 0 0 2 0 Ribosome 0.500231643921101 0.500231643921094 0 0 hm5C_site_60401 DeepMRMD:0;iRNA_m5C:0 60402 chr19 48342644 48342644 1 + C G HNSC 48342640 + 48342620 48342660 41 AGCAGCAGAAACAGCAGCAGCAGCCCCCAGGGGGCCAGGCC AGCAGCAGAAACAGCAGCAGCAGCGCCCAGGGGGCCAGGCC < 41bp 0.459822502504087 0.755639662793803 0.30118397 0.4622147 prediction 0.511279325587606 Functional Gain - CRX ENSG00000105392 CDS Human protein_coding chr19:48342640 chr19:48342644 nonsynonymous SNV 0.922 3 25 hm5C_associated_SNPs_107257 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_60402 DeepMRMD:0;iRNA_m5C:0 60403 chr12 58015593 58015593 1 + C A STAD 58015589 + 58015569 58015609 41 TTGAACGTGAGATTCCGAGACCGGCTACCCACGCCGATCCC TTGAACGTGAGATTCCGAGACCGGATACCCACGCCGATCCC < 41bp 0.34148497337789 0.755628826426967 0.6165312 0.8557062 prediction 0.511257652853935 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58015589 chr12:58015593 nonsynonymous SNV 0.816 3 25 hm5C_associated_SNPs_107258 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0.47835 0 hm5C_site_60403 DeepMRMD:0.47835;iRNA_m5C:0 60404 chr14 24880346 24880346 1 + C A STAD 24880345 + 24880325 24880365 41 GCAGTGCAGTTTTTCTGGAACCGGGGACACCGAGAGGTCAC GCAGTGCAGTTTTTCTGGAACAGGGGACACCGAGAGGTCAC < 41bp 0.507974385799728 0.763600694326505 0.8512089 0.83731747 prediction 0.511252617053553 Functional Gain - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24880345 chr14:24880346 synonymous SNV . 0 22 hm5C_associated_SNPs_107259 0 0 0 0 2 Exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_60404 DeepMRMD:0;iRNA_m5C:0 60405 chr7 148311348 148311348 1 + C A UCEC 148311344 + 148311324 148311364 41 GTTACCTAGATCTGCTAACTCTCTCTTACAAGCCTGGGAGG GTTACCTAGATCTGCTAACTCTCTATTACAAGCCTGGGAGG < 41bp 0.334142315172408 0.755620154034988 0.10579601 0.91499454 prediction 0.511240308069976 Functional Gain - C7orf33 ENSG00000170279 CDS Human protein_coding chr7:148311344 chr7:148311348 nonsynonymous SNV 0.002 1 25 hm5C_associated_SNPs_107260 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.82998908 0 hm5C_site_60405 DeepMRMD:0.82998908;iRNA_m5C:0 60406 chr8 21961066 21961066 1 + C A rs115250794 21961062 + 21961042 21961082 41 CCCAAAGCATGTTCCGCACCCAGGCGGGGGCCCCTGCTAAT CCCAAAGCATGTTCCGCACCCAGGAGGGGGCCCCTGCTAAT < 41bp 0.64912512490962 0.904731983077922 0.36000818 0.72792953 prediction 0.511213716336604 Functional Gain - FAM160B2 ENSG00000256586 ncRNA_exonic Human other chr8:21961062 chr8:21961066 . . 0 25 hm5C_associated_SNPs_107261 0 0 1 0 0 chromatin 0.500231643919623 0.500231643920488 0.45585906 1.72839520473644e-12 hm5C_site_60406 DeepMRMD:0.45585906;iRNA_m5C:1.72839520473644e-12 60407 chr10 47087389 47087389 1 + C A rs145691368 47087388 + 47087368 47087408 41 GGCGGATAAGGTGGTCTGTACCGAGTCCTGGCCACTGGCTC GGCGGATAAGGTGGTCTGTACAGAGTCCTGGCCACTGGCTC < 41bp 0.520261018413526 0.775864498563424 0.38403395 0.27062523 prediction 0.511206960299796 Functional Gain - NPY4R;NPY4R2 ENSG00000204174 CDS Human protein_coding chr10:47087388 chr10:47087389 synonymous SNV . 0 22 hm5C_associated_SNPs_107262 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_60407 DeepMRMD:0;iRNA_m5C:0 60408 chr15 38591666 38591666 1 + T C LGG 38591664 + 38591644 38591684 41 GGAGGGAGTGGACTAAGCAGCGTCACTGTCTTCAAAGTCCC GGAGGGAGTGGACTAAGCAGCGCCACTGTCTTCAAAGTCCC < 41bp 0.557593418077033 0.81318920007374 0.1341247 0.12279409 prediction 0.511191563993413 Functional Gain - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38591664 chr15:38591666 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_107263 0 0 1 0 2 Ribosome 0.500231644066756 0.500231643921576 0 0 hm5C_site_60408 DeepMRMD:0;iRNA_m5C:0 60409 chr7 137689557 137689557 1 + T A rs73729542 137689553 + 137689533 137689573 41 GCCAGAGGACCCAGCTAAGCCACGTTCAACTTCCTGACCTG GCCAGAGGACCCAGCTAAGCCACGATCAACTTCCTGACCTG < 41bp 0.53126062773025 0.786832091466523 0.34554493 0.41391197 prediction 0.511142927472546 Functional Gain - CREB3L2;AKR1D1 ENSG00000182158;ENSG00000234639 intergenic Human other chr7:137689553 chr7:137689557 . . 0 25 hm5C_associated_SNPs_107264 0 0 0 0 1 unknown 0.500231642531956 0.500231643506487 0 1.9490613567541e-09 hm5C_site_60409 DeepMRMD:0;iRNA_m5C:1.9490613567541e-09 60410 chr16 3707293 3707293 1 + C T rs34186031 3707292 + 3707272 3707312 41 CCCACCTTCCAGTGGCTGATCCCCGACAGCGCTGACACCAC CCCACCTTCCAGTGGCTGATCTCCGACAGCGCTGACACCAC < 41bp 0.518069835411609 0.773639577511151 0.087765515 0.8327613 prediction 0.511139484199085 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707292 chr16:3707293 nonsynonymous SNV 0.330 1 22 hm5C_associated_SNPs_107265 0 0 1 0 1 Cytosol 0.500231643921083 0.500231643918889 0.6655226 0 hm5C_site_60410 DeepMRMD:0.6655226;iRNA_m5C:0 60411 chr12 122689161 122689161 1 + C A rs12827843 122689157 + 122689137 122689177 41 AGCACGGAGACAGTCTCCAGCTGCCGTTCATGCTTCCTCCC AGCACGGAGACAGTCTCCAGCTGCAGTTCATGCTTCCTCCC < 41bp 0.521767163844852 0.777335724077778 0.20939305 0.22721252 prediction 0.511137120465852 Functional Gain - B3GNT4 ENSG00000176383 UTR5 Human protein_coding chr12:122689157 chr12:122689161 . . 0 25 hm5C_associated_SNPs_107266 0 0 0 0 2 chromatin 0.500231733248464 0.500231643921067 0 0 hm5C_site_60411 DeepMRMD:0;iRNA_m5C:0 60412 chr19 42730344 42730344 1 + C G GBM 42730343 + 42730323 42730363 41 CTGCATCAGCGGGTCCATGCCCGAGCTCGGACTTTGACGCT CTGCATCAGCGGGTCCATGCCGGAGCTCGGACTTTGACGCT < 41bp 0.587376957620765 0.842944913751867 0.23632884 0.92468065 prediction 0.511135912262203 Functional Gain - ZNF526 ENSG00000167625 CDS Human protein_coding chr19:42730343 chr19:42730344 nonsynonymous SNV 0.997 0 22 hm5C_associated_SNPs_107267 0 0 1 0 0 Cytosol 0.500231599879417 0.500231643920875 0.8493613 8.80829145177842e-08 hm5C_site_60412 DeepMRMD:0.8493613;iRNA_m5C:8.80829145177842e-08 60413 chr20 61917752 61917752 1 + T C rs544748417 61917750 + 61917730 61917770 41 GGTAGTAAGGGATGGCGGGACGTCACCACCTTTTTTTCGGG GGTAGTAAGGGATGGCGGGACGCCACCACCTTTTTTTCGGG < 41bp 0.523370257997084 0.778926373137746 0.19722289 0.23664346 prediction 0.511112230281324 Functional Gain - ARFGAP1 ENSG00000101199 CDS Human protein_coding chr20:61917750 chr20:61917752 nonsynonymous SNV 0.973 0 23 hm5C_associated_SNPs_107268 0 0 1 0 3 Nucleus 0.500231643921092 0.500231643921093 0 4.44089209850063e-16 hm5C_site_60413 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 60414 chr9 135374905 135374905 1 + C T OV 135374904 + 135374884 135374924 41 TACCGTCAGCTCAATGACATCCGCATCAGTGACCAGGATGA TACCGTCAGCTCAATGACATCTGCATCAGTGACCAGGATGA < 41bp 0.502584920710963 0.758137534593356 0.185906 0.1670666 prediction 0.511105227764785 Functional Gain - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135374904 chr9:135374905 nonsynonymous SNV 0.783 4 22 hm5C_associated_SNPs_107269 0 0 0 0 1 nucleus 0.500231609732317 0.500219333688699 0 0 hm5C_site_60414 DeepMRMD:0;iRNA_m5C:0 60415 chr9 84532651 84532651 1 + T A BRCA 84532647 + 84532627 84532667 41 GCCAAATTAAACATCAAAATCTGGTAGCATTGGTGAGTGAG GCCAAATTAAACATCAAAATCTGGAAGCATTGGTGAGTGAG < 41bp 0.476724432658492 0.755551334577171 0.2247099 0.40471512 prediction 0.511102669154341 Functional Gain - SPATA31D5P ENSG00000240632 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:84532647 chr9:84532651 . . 0 25 hm5C_associated_SNPs_107270 0 0 0 0 0 unknown 0.500231637249335 0.50023164257227 0 1.06458697413103e-08 hm5C_site_60415 DeepMRMD:0;iRNA_m5C:1.06458697413103e-08 60416 chr4 88533730 88533730 1 + T C rs61731009 88533728 + 88533708 88533748 41 ATACATGGGAAAGAAGAAAACATCACAGCAAATGGCATCCA ATACATGGGAAAGAAGAAAACACCACAGCAAATGGCATCCA < 41bp 0.536703952503908 0.792254821761255 0.12775677 0.15310717 prediction 0.511101738514693 Functional Gain - DSPP ENSG00000152591 CDS Human protein_coding chr4:88533728 chr4:88533730 nonsynonymous SNV 0.148 1 23 hm5C_associated_SNPs_107271 0 0 0 0 0 exosome 0.500231669541417 0.500231650900778 0 0 hm5C_site_60416 DeepMRMD:0;iRNA_m5C:0 60417 chr5 180691405 180691405 1 + C G rs149955558 180691404 + 180691384 180691424 41 ACTAAAAATACAAAAATTAGCCAGGCGTGGCGGCAGGTGCC ACTAAAAATACAAAAATTAGCGAGGCGTGGCGGCAGGTGCC < 41bp 0.580603243405004 0.83613658144311 0.6672805 0.9061142 prediction 0.511066676076211 Functional Gain - TRIM52-AS1 ENSG00000233937;ENSG00000248275 ncRNA_intronic Human other chr5:180691404 chr5:180691405 . . 0 22 hm5C_associated_SNPs_107272 0 0 0 0 0 unknown 0.500231643922336 0.500231643921952 0.4776674 0 hm5C_site_60417 DeepMRMD:0.4776674;iRNA_m5C:0 60418 chr19 52091119 52091119 1 + T C UCEC 52091117 + 52091097 52091137 41 TGCAGTGACTGTGGAAAAACCTTCACCCAAAAGTCACACCT TGCAGTGACTGTGGAAAAACCTCCACCCAAAAGTCACACCT < 41bp 0.476157843649707 0.755526600025689 0.01581785 0.8564872 prediction 0.511053200051377 Functional Gain - ZNF175 ENSG00000105497 CDS Human protein_coding chr19:52091117 chr19:52091119 nonsynonymous SNV 0.626 3 23 hm5C_associated_SNPs_107273 0 0 1 0 0 chromatin 0.500224000857675 0.500231643922672 0.7129744 1.52861299929086e-05 hm5C_site_60418 DeepMRMD:0.7129744;iRNA_m5C:1.52861299929086e-05 60419 chr2 241992606 241992606 1 + C A BLCA 241992602 + 241992582 241992622 41 GCCCCCCGGAGGAGGTGAAGCACGCCACACTGCGCTTCAAC GCCCCCCGGAGGAGGTGAAGCACGACACACTGCGCTTCAAC < 41bp 0.349254186636974 0.755520114624876 0.41617742 0.55174935 prediction 0.511040229249751 Functional Gain - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241992602 chr2:241992606 nonsynonymous SNV 0.786 1 25 hm5C_associated_SNPs_107274 0 0 0 0 1 nucleus 0.500232804822828 0.50023164388628 0.1034987 0 hm5C_site_60419 DeepMRMD:0.1034987;iRNA_m5C:0 60420 chr10 25464812 25464812 1 + G T UCEC 25464816 - 25464796 25464836 41 TCCACACCAGCGCCTGGTACCAATCCAGGTCGTCCTGCAAG TCCACACCAGCGCCTGGTACCAATACAGGTCGTCCTGCAAG < 41bp 0.36620762333097 0.755519727961404 0.17640659 0.19308344 prediction 0.511039455922809 Functional Gain - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25464816 chr10:25464812 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_107275 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921093 0 1.11022302462516e-15 hm5C_site_60420 DeepMRMD:0;iRNA_m5C:1.11022302462516e-15 60421 chr3 131080839 131080839 1 + C A UCEC 131080835 + 131080815 131080855 41 CGCTGGGGCCAGGCTAGAGGCATGCCTGCTATGCGCTCCTG CGCTGGGGCCAGGCTAGAGGCATGACTGCTATGCGCTCCTG < 41bp 0.64434603224971 0.899846574747879 0.29901177 0.44852722 prediction 0.511001084996338 Functional Gain - NUDT16P1 ENSG00000246082 ncRNA_exonic Human transcribed_unitary_pseudogene chr3:131080835 chr3:131080839 . . 0 25 hm5C_associated_SNPs_107276 0 0 1 0 1 unknown 0.500231643921023 0.500231643921065 0 8.26005930321116e-14 hm5C_site_60421 DeepMRMD:0;iRNA_m5C:8.26005930321116e-14 60422 chr14 74823606 74823606 1 + C A UCEC 74823602 + 74823582 74823622 41 GGAGGCCAAGCAGGTCCTGTCTTCCTTCACTCTCCCCACCT GGAGGCCAAGCAGGTCCTGTCTTCATTCACTCTCCCCACCT < 41bp 0.340839008812424 0.755491410858432 0.12900388 0.885023 prediction 0.510982821716863 Functional Gain - VRTN ENSG00000133980 CDS Human protein_coding chr14:74823602 chr14:74823606 synonymous SNV . 0 25 hm5C_associated_SNPs_107277 0 0 0 0 0 unknown 0.500231643923571 0.500231643921201 0.770046 0 hm5C_site_60422 DeepMRMD:0.770046;iRNA_m5C:0 60423 chr1 35223031 35223031 1 + C A LUSC 35223027 + 35223007 35223047 41 TCTCTGGTCTTCATCTTCCGCGTGCTGGTGTACCTGGTGAC TCTCTGGTCTTCATCTTCCGCGTGATGGTGTACCTGGTGAC < 41bp 0.365763344023614 0.755484961150732 0.08245593 0.13894868 prediction 0.510969922301465 Functional Gain - GJB5 ENSG00000189280 CDS Human protein_coding chr1:35223027 chr1:35223031 nonsynonymous SNV 0.908 1 25 hm5C_associated_SNPs_107278 0 0 0 0 0 Ribosome 0.500069494181035 0.500237182496946 0 0.000335376631822815 hm5C_site_60423 DeepMRMD:0;iRNA_m5C:0.000335376631822815 60424 chr2 207509074 207509074 1 + C A UCEC 207509070 + 207509050 207509090 41 TTTCTTCTGCCATAGCCAGACAGACTTGCTGGCTCTTAGCC TTTCTTCTGCCATAGCCAGACAGAATTGCTGGCTCTTAGCC < 41bp 0.378568412600194 0.755473295128761 0.8050585 0.8769964 prediction 0.510946590257523 Functional Gain - FAM237A ENSG00000235118 ncRNA_exonic Human protein_coding chr2:207509070 chr2:207509074 . . 0 25 hm5C_associated_SNPs_107279 0 0 0 0 0 unknown 0.500227085753755 0.50020748336915 0.1438758 0 hm5C_site_60424 DeepMRMD:0.1438758;iRNA_m5C:0 60425 chr10 101464242 101464242 1 + T C LGG 101464240 + 101464220 101464260 41 AGGAAGGTGTCCGACAAGCCCATGGTAGCTGGTTCCGTCTC AGGAAGGTGTCCGACAAGCCCACGGTAGCTGGTTCCGTCTC < 41bp 0.511634478462367 0.767104315636185 0.3984537 0.4199776 prediction 0.510939674347634 Functional Gain - ENTPD7 ENSG00000198018 CDS Human protein_coding chr10:101464240 chr10:101464242 synonymous SNV . 0 23 hm5C_associated_SNPs_107280 0 0 1 0 1 Endoplasmic reticulum 0.50023164392109 0.500231643921073 0 0 hm5C_site_60425 DeepMRMD:0;iRNA_m5C:0 60426 chr7 139655310 139655310 1 + C G rs138612126 139655309 + 139655289 139655329 41 GCCAGCGTCGCCTTTGGCACCCCGGTGGACTCCTGGCAGGC GCCAGCGTCGCCTTTGGCACCGCGGTGGACTCCTGGCAGGC < 41bp 0.606823834528228 0.862291821616269 0.62489116 0.89015615 prediction 0.510935974176083 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139655309 chr7:139655310 nonsynonymous SNV 0.813 0 22 hm5C_associated_SNPs_107281 0 0 0 0 2 Endoplasmic reticulum 0.500231643921093 0.50023394781149 0.53052998 4.60778079403035e-06 hm5C_site_60426 DeepMRMD:0.53052998;iRNA_m5C:4.60778079403035e-06 60427 chr7 5959528 5959528 1 + T C rs143251519 5959526 + 5959506 5959546 41 TGCCGAAGACTGGACAGCATCGTTGGGCCCCAGCTCACAGT TGCCGAAGACTGGACAGCATCGCTGGGCCCCAGCTCACAGT < 41bp 0.54404817265731 0.799515381380548 0.14081275 0.17151305 prediction 0.510934417446476 Functional Gain - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5959526 chr7:5959528 nonsynonymous SNV 0.997 3 23 hm5C_associated_SNPs_107282 0 0 0 0 2 Ribosome 0.500231730868702 0.500231643382648 0 0 hm5C_site_60427 DeepMRMD:0;iRNA_m5C:0 60428 chr2 122485894 122485894 1 + A G SKCM 122485896 - 122485876 122485916 41 AGAAAAAAGTTTCAGGTACTCTTGACACTCCTGAGAAGACT AGAAAAAAGTTTCAGGTACTCTCGACACTCCTGAGAAGACT < 41bp 0.54205032528109 0.797513745637283 0.11383495 0.58371526 prediction 0.510926840712387 Functional Gain - NIFK ENSG00000155438 CDS Human protein_coding chr2:122485896 chr2:122485894 synonymous SNV . 0 23 hm5C_associated_SNPs_107283 0 0 1 0 2 Ribosome 0.500231643921069 0.500231643921082 0.16743052 2.62012633811537e-14 hm5C_site_60428 DeepMRMD:0.16743052;iRNA_m5C:2.62012633811537e-14 60429 chr16 67917918 67917918 1 + T C CESC 67917916 + 67917896 67917936 41 GACCCCATCACTCGGGACCACATGGGCTCCGTTATGGCCCA GACCCCATCACTCGGGACCACACGGGCTCCGTTATGGCCCA < 41bp 0.510267495723387 0.765719611778119 0.2745518 0.2980989 prediction 0.510904232109463 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917916 chr16:67917918 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_107284 0 0 1 0 1 Cytosol 0.500231643903752 0.500231643924103 0 4.07012201719681e-11 hm5C_site_60429 DeepMRMD:0;iRNA_m5C:4.07012201719681e-11 60430 chr19 39589701 39589701 1 + C A STAD 39589700 + 39589680 39589720 41 CGTCTGGCTGTGTTTGGAGACCTGGGGGCTGACAACCCGAA CGTCTGGCTGTGTTTGGAGACATGGGGGCTGACAACCCGAA < 41bp 0.512164912716005 0.767611548884153 0.62458444 0.8505401 prediction 0.510893272336296 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39589700 chr19:39589701 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_107285 0 0 0 0 1 exosome 0.5002316507531 0.500231722897183 0.45191132 1.44288165193629e-07 hm5C_site_60430 DeepMRMD:0.45191132;iRNA_m5C:1.44288165193629e-07 60431 chr13 115091726 115091726 1 + T G rs149344812 115091724 + 115091704 115091744 41 ATAAAAAGCTAATGGAAGCTCTTGAACCGCCACTGGAGGAG ATAAAAAGCTAATGGAAGCTCTGGAACCGCCACTGGAGGAG < 41bp 0.595845528846294 0.851290036534532 0.26621586 0.46249774 prediction 0.510889015376476 Functional Gain - CHAMP1 ENSG00000198824 CDS Human protein_coding chr13:115091724 chr13:115091726 synonymous SNV . 0 23 hm5C_associated_SNPs_107286 0 0 1 0 0 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_60431 DeepMRMD:0;iRNA_m5C:0 60432 chr6 88362867 88362867 1 + T C LUSC 88362865 + 88362845 88362885 41 AGGATGAACTGATGACCATACTTGAGAAATGTTTCAAGGTT AGGATGAACTGATGACCATACTCGAGAAATGTTTCAAGGTT < 41bp 0.482205730292593 0.755440948780338 0.16988379 0.43746543 prediction 0.510881897560675 Functional Gain - ORC3 ENSG00000135336 CDS Human protein_coding chr6:88362865 chr6:88362867 synonymous SNV . 0 23 hm5C_associated_SNPs_107287 0 0 0 4 1 Cytosol 0.500231643921092 0.500231643921091 0 0 hm5C_site_60432 DeepMRMD:0;iRNA_m5C:0 60433 chr21 46117387 46117387 1 + C A SKCM 46117383 + 46117363 46117403 41 TCGTGCTGCCAGCAGTCTAGCTGCCAGCCGGCTTGCTGCAC TCGTGCTGCCAGCAGTCTAGCTGCAAGCCGGCTTGCTGCAC < 41bp 0.655590116189115 0.911017704046392 0.25666183 0.34338957 prediction 0.510855175714553 Functional Gain - KRTAP10-12 ENSG00000189169 CDS Human protein_coding chr21:46117383 chr21:46117387 nonsynonymous SNV 0.994 0 25 hm5C_associated_SNPs_107288 0 0 0 0 0 unknown 0.500231643940892 0.500231634432882 0 0 hm5C_site_60433 DeepMRMD:0;iRNA_m5C:0 60434 chr7 6617262 6617262 1 + C G rs182391055 6617261 + 6617241 6617281 41 CTCGCCCGAGTCCGGGGCGGCCCCGGTGTCCCCTCCGAGCC CTCGCCCGAGTCCGGGGCGGCGCCGGTGTCCCCTCCGAGCC < 41bp 0.535041294698478 0.790468631222349 0.47924557 0.6111922 prediction 0.510854673047741 Functional Gain - ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617261 chr7:6617262 . . 0 22 hm5C_associated_SNPs_107289 0 0 1 0 2 Cytosol 0.500231638995167 0.500231643053092 0.2223844 8.11584999205195e-09 hm5C_site_60434 DeepMRMD:0.2223844;iRNA_m5C:8.11584999205195e-09 60435 chr17 38350730 38350730 1 + C G rs7221536 38350726 + 38350706 38350746 41 GCATGCCCAGGCTTGTGAGCCAAGCTGCTTTTTGGGGCAGG GCATGCCCAGGCTTGTGAGCCAAGGTGCTTTTTGGGGCAGG < 41bp 0.561489268141682 0.816913990546655 0.4039721 0.85375774 prediction 0.510849444809947 Functional Gain - RAPGEFL1 ENSG00000108352 UTR3 Human protein_coding chr17:38350726 chr17:38350730 . . 0 25 hm5C_associated_SNPs_107290 0 0 1 0 0 chromatin 0.500231646019981 0.500231643921093 0.70751548 0 hm5C_site_60435 DeepMRMD:0.70751548;iRNA_m5C:0 60436 chr9 91926133 91926133 1 + C G rs564186726 91926132 + 91926112 91926152 41 TAGTCTCCGGCGAGTTGTTGCCTGGGCTGGACGTGGTTTTG TAGTCTCCGGCGAGTTGTTGCGTGGGCTGGACGTGGTTTTG < 41bp 0.477748043675258 0.75541964105213 0.3865415 0.85695267 prediction 0.510839282104259 Functional Gain - CKS2 ENSG00000123975 UTR5 Human protein_coding chr9:91926132 chr9:91926133 . . 0 22 hm5C_associated_SNPs_107291 0 0 1 0 0 Ribosome 0.500231643946968 0.500231643516772 0.71390534 0 hm5C_site_60436 DeepMRMD:0.71390534;iRNA_m5C:0 60437 chr13 58207325 58207325 1 + C A LUAD 58207321 + 58207301 58207341 41 TCACCATACGCTCGTGCTGACTGCCCTGGACGGTGGCGAGC TCACCATACGCTCGTGCTGACTGCACTGGACGGTGGCGAGC < 41bp 0.337963732922402 0.755412733098476 0.09227145 0.23308659 prediction 0.510825466196952 Functional Gain - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58207321 chr13:58207325 synonymous SNV . 0 25 hm5C_associated_SNPs_107292 0 0 0 0 0 exosome 0.500231643895277 0.500231637566444 0 0 hm5C_site_60437 DeepMRMD:0;iRNA_m5C:0 60438 chr7 100732051 100732051 1 + C G LUAD 100732047 + 100732027 100732067 41 GGGGCCGAATCTGGACGGCTCTGGCCTCCTCCCCAGACCCA GGGGCCGAATCTGGACGGCTCTGGGCTCCTCCCCAGACCCA < 41bp 0.579167593621923 0.834578615203018 0.20854995 0.49920636 prediction 0.510822043162191 Functional Gain - TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100732047 chr7:100732051 synonymous SNV . 0 25 hm5C_associated_SNPs_107293 0 0 1 0 0 nucleus 0.500231643921115 0.500231643921095 0 0 hm5C_site_60438 DeepMRMD:0;iRNA_m5C:0 60439 chrX 51637766 51637766 1 + C A OV 51637762 + 51637742 51637782 41 CAGTCTGTCACCCCCTCCCCCAGCCTCCTGCCTCCACCCTC CAGTCTGTCACCCCCTCCCCCAGCATCCTGCCTCCACCCTC < 41bp 0.346160448782519 0.755408368596955 0.07211107 0.12842947 prediction 0.510816737193911 Functional Gain - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51637762 chrX:51637766 nonsynonymous SNV 0.149 1 25 hm5C_associated_SNPs_107294 0 0 1 0 1 chromatin 0.500231643927524 0.500231643921093 0 0 hm5C_site_60439 DeepMRMD:0;iRNA_m5C:0 60440 chr6 26156726 26156726 1 + T A LGG 26156722 + 26156702 26156742 41 AGGTGCGGCCAAGCGCAAAGCGTCTGGGCCCCCGGTGTCCG AGGTGCGGCCAAGCGCAAAGCGTCAGGGCCCCCGGTGTCCG < 41bp 0.599273334678634 0.854662575637607 0.16772997 0.17478669 prediction 0.510778481917947 Functional Gain - HIST1H1E ENSG00000168298 CDS Human protein_coding chr6:26156722 chr6:26156726 synonymous SNV . 0 25 hm5C_associated_SNPs_107295 0 0 1 0 0 Ribosome 0.500231643975655 0.500231644512275 0 1.07323949727345e-09 hm5C_site_60440 DeepMRMD:0;iRNA_m5C:1.07323949727345e-09 60441 chr19 50208005 50208005 1 + C T SKCM 50208004 + 50207984 50208024 41 GGAATTTGTGTACCTGCGCTCCCGAAATCCGCTGATGGTGA GGAATTTGTGTACCTGCGCTCTCGAAATCCGCTGATGGTGA < 41bp 0.520712149548628 0.776098900593948 0.22776434 0.9076997 prediction 0.510773502090641 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208004 chr19:50208005 synonymous SNV . 0 22 hm5C_associated_SNPs_107296 0 0 0 0 2 exosome 0.50023164392109 0.500231643700999 0.8153994 0 hm5C_site_60441 DeepMRMD:0.8153994;iRNA_m5C:0 60442 chr3 183906908 183906908 1 + C G LUAD 183906904 + 183906884 183906924 41 CAGGTGGCTGGAGGATGAGGCTGGCCCTGGCCCGGGCCCTC CAGGTGGCTGGAGGATGAGGCTGGGCCTGGCCCGGGCCCTC < 41bp 0.584798431867148 0.840184293481201 0.8931129 0.93001586 prediction 0.510771723228107 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906904 chr3:183906908 nonsynonymous SNV 0.992 5 25 hm5C_associated_SNPs_107297 0 0 1 0 2 Cytosol 0.500231643935777 0.50023164622964 0.0738059200000001 4.58772619893466e-09 hm5C_site_60442 DeepMRMD:0.0738059200000001;iRNA_m5C:4.58772619893466e-09 60443 chr11 45926374 45926374 1 + C A HNSC 45926373 + 45926353 45926393 41 GGCGTCAAGGCCGATGACTCCCAGGAGGCCAAGGTGACTTC GGCGTCAAGGCCGATGACTCCAAGGAGGCCAAGGTGACTTC < 41bp 0.514301968623003 0.769686040497955 0.30347335 0.39490402 prediction 0.510768143749903 Functional Gain - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926373 chr11:45926374 nonsynonymous SNV 0.993 0 22 hm5C_associated_SNPs_107298 0 0 0 0 1 Endoplasmic reticulum 0.500231644542303 0.500231643953381 0 0 hm5C_site_60443 DeepMRMD:0;iRNA_m5C:0 60444 chr19 39963553 39963553 1 + C T SKCM 39963552 + 39963532 39963572 41 CGGCCAGACCGTGCGCATCTCCCAGGGGCCCTACAAAGGTG CGGCCAGACCGTGCGCATCTCTCAGGGGCCCTACAAAGGTG < 41bp 0.499046280738318 0.755380460846804 0.17731881 0.057542205 prediction 0.510760921693607 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39963552 chr19:39963553 synonymous SNV . 0 22 hm5C_associated_SNPs_107299 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_60444 DeepMRMD:0;iRNA_m5C:0 60445 chr11 49580154 49580154 1 + C G rs538325809 49580153 + 49580133 49580173 41 AGCCGTTCTGCCTGCTGTCACCGCTGCCTCCATCGCCGACA AGCCGTTCTGCCTGCTGTCACGGCTGCCTCCATCGCCGACA < 41bp 0.475325354518212 0.755380120175147 0.5732509 0.9377083 prediction 0.510760240350293 Functional Gain - LOC440040 ENSG00000205035 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:49580153 chr11:49580154 . . 0 22 hm5C_associated_SNPs_107300 0 0 0 0 0 unknown 0.500231643844369 0.500231643921077 0.7289148 1.53416390702432e-10 hm5C_site_60445 DeepMRMD:0.7289148;iRNA_m5C:1.53416390702432e-10 60446 chr11 55607038 55607038 1 + C A BLCA 55607034 + 55607014 55607054 41 GTACCCAACTCCAAAAACTCCAGGCACACAGTCAAAGTGGC GTACCCAACTCCAAAAACTCCAGGAACACAGTCAAAGTGGC < 41bp 0.650390922412635 0.905763151231709 0.37567466 0.19110444 prediction 0.510744457638148 Functional Gain - OR5D16 ENSG00000205029 CDS Human protein_coding chr11:55607034 chr11:55607038 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_107301 0 0 0 0 0 unknown 0.500231643919061 0.500231643921093 0 4.0654146715724e-12 hm5C_site_60446 DeepMRMD:0;iRNA_m5C:4.0654146715724e-12 60447 chr1 22846616 22846616 1 + C T UCEC 22846615 + 22846595 22846635 41 TTCCCCACTCTTCAGGATCACCGGAAGCACATCCATGAGGT TTCCCCACTCTTCAGGATCACTGGAAGCACATCCATGAGGT < 41bp 0.500167185698129 0.755533566404968 0.6138717 0.5966767 prediction 0.510732761413678 Functional Gain - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22846615 chr1:22846616 nonsynonymous SNV 0.998 4 22 hm5C_associated_SNPs_107302 0 0 1 0 1 Nucleus 0.500231200636821 0.500225799169408 0 0 hm5C_site_60447 DeepMRMD:0;iRNA_m5C:0 60448 chr5 126732295 126732295 1 + C T SARC 126732294 + 126732274 126732314 41 AAAAATGGGGCTCTGTGCAACCCCATCACCGGGGCTTGCCA AAAAATGGGGCTCTGTGCAACTCCATCACCGGGGCTTGCCA < 41bp 0.520495624979751 0.775848067304162 0.095788 0.9574406 prediction 0.510704884648822 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126732294 chr5:126732295 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107303 0 0 0 0 1 exosome 0.500231643921117 0.500231643921092 0.9148812 0 hm5C_site_60448 DeepMRMD:0.9148812;iRNA_m5C:0 60449 chr1 6631153 6631153 1 + C A rs114926762 6631152 + 6631132 6631172 41 CTCTCCCTGCCAGGGCAACACCACATAGAGCTCCAAGGAGA CTCTCCCTGCCAGGGCAACACAACATAGAGCTCCAAGGAGA < 41bp 0.522049352501096 0.777400367490781 0.24058467 0.23393726 prediction 0.510702029979371 Functional Gain - TAS1R1 ENSG00000173662 CDS Human protein_coding chr1:6631152 chr1:6631153 nonsynonymous SNV 0.410 2 22 hm5C_associated_SNPs_107304 0 0 0 0 0 membrane 0.500231639704621 0.500231645751975 0 1.20947079018663e-08 hm5C_site_60449 DeepMRMD:0;iRNA_m5C:1.20947079018663e-08 60450 chr6 32612982 32612982 1 + T A rs9273148 32612978 + 32612958 32612998 41 ATTATAGCAAATGTACCACTCAGATGGGAGATGTTGCTAAT ATTATAGCAAATGTACCACTCAGAAGGGAGATGTTGCTAAT < 41bp 0.491654047559093 0.755344844938053 0.30803168 0.5193356 prediction 0.510689689876107 Functional Gain - HLA-DQA1;HLA-DQB1 ENSG00000196735;ENSG00000179344 intergenic Human other chr6:32612978 chr6:32612982 . . 0 25 hm5C_associated_SNPs_107305 0 0 0 0 0 unknown 0.500231643921528 0.500231643921092 0.0386712 0 hm5C_site_60450 DeepMRMD:0.0386712;iRNA_m5C:0 60451 chr15 99670265 99670265 1 + C A rs3743244 99670264 + 99670244 99670284 41 AGGCTAAGGAGAAGGACTCACCGAAGGAGAAGAGCGTGCGA AGGCTAAGGAGAAGGACTCACAGAAGGAGAAGAGCGTGCGA < 41bp 0.524634554504508 0.779979118071867 0.41088873 0.5496843 prediction 0.510689127134719 Functional Gain - SYNM ENSG00000182253 CDS Human protein_coding chr15:99670264 chr15:99670265 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_107306 0 0 0 0 0 exosome 0.5002316440805 0.5002316449052 0.0993686 1.64939972790989e-09 hm5C_site_60451 DeepMRMD:0.0993686;iRNA_m5C:1.64939972790989e-09 60452 chr12 124189157 124189157 1 + T C UCEC 124189155 + 124189135 124189175 41 TGCCTGGATATTCCTGCTCACCTGAGCATCCGCATCCTCAT TGCCTGGATATTCCTGCTCACCCGAGCATCCGCATCCTCAT < 41bp 0.547318315770099 0.802647380166668 0.02416411 0.038268536 prediction 0.510658128793139 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124189155 chr12:124189157 nonsynonymous SNV 0.013 4 23 hm5C_associated_SNPs_107307 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_60452 DeepMRMD:0;iRNA_m5C:0 60453 chr6 43146124 43146124 1 + C T SKCM 43146123 + 43146103 43146143 41 CCGCATGCGGTGATGTATGCCCCCACCTCGGGCCTGGGTGA CCGCATGCGGTGATGTATGCCTCCACCTCGGGCCTGGGTGA < 41bp 0.516652024645315 0.771978242262341 0.034556895 0.9116952 prediction 0.510652435234053 Functional Gain - SRF ENSG00000112658 CDS Human protein_coding chr6:43146123 chr6:43146124 nonsynonymous SNV 0.998 2 22 hm5C_associated_SNPs_107308 0 0 1 0 2 Ribosome 0.500231662704815 0.500232567442775 0.8233904 1.80947591976732e-06 hm5C_site_60453 DeepMRMD:0.8233904;iRNA_m5C:1.80947591976732e-06 60454 chr8 22745201 22745201 1 + C G rs139754395 22745200 + 22745180 22745220 41 AGGCAGGAGGATCGCTTGAGCCCAGGAAGTCGAGGCTGCAG AGGCAGGAGGATCGCTTGAGCGCAGGAAGTCGAGGCTGCAG < 41bp 0.469572178623786 0.755324292483076 0.10048419 0.3390286 prediction 0.510648584966151 Functional Gain - LOC101929237 ENSG00000248738 ncRNA_exonic Human antisense chr8:22745200 chr8:22745201 . . 0 22 hm5C_associated_SNPs_107309 0 0 0 0 1 unknown 0.500231643921092 0.500231643921093 0 4.44089209850063e-16 hm5C_site_60454 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 60455 chr11 114182868 114182868 1 + C T SKCM 114182867 + 114182847 114182887 41 CACTGGGGGCCGTCCCCTTACCCCCGGCTGACTGCGTGCTC CACTGGGGGCCGTCCCCTTACTCCCGGCTGACTGCGTGCTC < 41bp 0.497622759742344 0.75532406242608 0.25333896 0.17223153 prediction 0.51064812485216 Functional Gain - NNMT ENSG00000166741 CDS Human protein_coding chr11:114182867 chr11:114182868 nonsynonymous SNV 0.001 3 22 hm5C_associated_SNPs_107310 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643920393 0 0 hm5C_site_60455 DeepMRMD:0;iRNA_m5C:0 60456 chr11 285235 285235 1 + T A KIRC 285231 + 285211 285251 41 GGCTGTGAAGAGAGCAAAGCCGGATCTGGTCATCACACACC GGCTGTGAAGAGAGCAAAGCCGGAACTGGTCATCACACACC < 41bp 0.591525523047622 0.846835354363138 0.41184103 0.54172945 prediction 0.510619662631033 Functional Gain - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:285231 chr11:285235 nonsynonymous SNV 0.066 0 25 hm5C_associated_SNPs_107311 0 0 0 0 1 chromatin 0.500231643936571 0.500231643922719 0.0834588999999999 0 hm5C_site_60456 DeepMRMD:0.0834588999999999;iRNA_m5C:0 60457 chr15 41794328 41794328 1 + C G rs150465612 41794324 + 41794304 41794344 41 CACGCGCAGCGCGCCGTCACCAAGCCGCGCTACATGCAGTG CACGCGCAGCGCGCCGTCACCAAGGCGCGCTACATGCAGTG < 41bp 0.565052369985338 0.820352541460088 0.8002151 0.8975371 prediction 0.510600342949501 Functional Gain - ITPKA ENSG00000137825 CDS Human protein_coding chr15:41794324 chr15:41794328 nonsynonymous SNV 0.948 3 25 hm5C_associated_SNPs_107312 0 0 1 0 1 chromatin 0.500231644342535 0.500221143386047 0.194644 0 hm5C_site_60457 DeepMRMD:0.194644;iRNA_m5C:0 60458 chr16 679557 679557 1 + C G rs144198679 679556 + 679536 679576 41 CAGTCCCCGGCAGCAGATGGCCTGGGGCGGACTGTCCCCAA CAGTCCCCGGCAGCAGATGGCGTGGGGCGGACTGTCCCCAA < 41bp 0.568734985402512 0.824029754129963 0.8044281 0.89772105 prediction 0.510589537454902 Functional Gain - RAB40C ENSG00000197562 downstream Human protein_coding chr16:679556 chr16:679557 . . 0 22 hm5C_associated_SNPs_107313 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.1865859 0 hm5C_site_60458 DeepMRMD:0.1865859;iRNA_m5C:0 60459 chr12 3104024 3104024 1 + T G BRCA 3104021 + 3104001 3104041 41 CGCCTCTGGGGGCAGTCAGGCACTGGACAAGCCCATCGACA CGCCTCTGGGGGCAGTCAGGCACGGGACAAGCCCATCGACA < 41bp 0.361885064752505 0.755293956448579 0.15833533 0.29110068 prediction 0.510587912897159 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3104021 chr12:3104024 nonsynonymous SNV 0.998 3 24 hm5C_associated_SNPs_107314 0 0 0 0 0 Cytosol 0.500231643921138 0.500231643848033 0 0 hm5C_site_60459 DeepMRMD:0;iRNA_m5C:0 60460 chr16 70500150 70500150 1 + T C UCEC 70500148 + 70500128 70500168 41 CTGGACTGCCTGCTGGACATCATGACCTATCGGGTGAGGCT CTGGACTGCCTGCTGGACATCACGACCTATCGGGTGAGGCT < 41bp 0.49292186951745 0.755288020307424 0.26573566 0.16699451 prediction 0.510576040614849 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70500148 chr16:70500150 nonsynonymous SNV 0.989 2 23 hm5C_associated_SNPs_107315 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_60460 DeepMRMD:0;iRNA_m5C:0 60461 chr11 66190315 66190315 1 + C A LUAD 66190314 + 66190294 66190334 41 CCTCTGGAGCCGAGACCCCGCCCAGGTCCTGGCCCTGGCCC CCTCTGGAGCCGAGACCCCGCACAGGTCCTGGCCCTGGCCC < 41bp 0.490115867106378 0.755287526049585 0.11617032 0.12076908 prediction 0.51057505209917 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190314 chr11:66190315 nonsynonymous SNV 0.992 1 22 hm5C_associated_SNPs_107316 0 0 0 0 1 unknown 0.500231639119744 0.500047766777419 0 0 hm5C_site_60461 DeepMRMD:0;iRNA_m5C:0 60462 chr9 125424164 125424164 1 + C A rs111803762 125424160 + 125424140 125424180 41 TCCGCTCAGACACTCGTCTCCAGACGCCCATGTACTTCTTT TCCGCTCAGACACTCGTCTCCAGAAGCCCATGTACTTCTTT < 41bp 0.373460736092777 0.755286568016133 0.5666327 0.26105934 prediction 0.510573136032265 Functional Gain - OR1L1 ENSG00000173679 CDS Human protein_coding chr9:125424160 chr9:125424164 nonsynonymous SNV 0.018 1 25 hm5C_associated_SNPs_107317 0 0 0 0 0 unknown 0.500231643919075 0.500231643920115 0 2.07878159130814e-12 hm5C_site_60462 DeepMRMD:0;iRNA_m5C:2.07878159130814e-12 60463 chr11 89774363 89774363 1 + C A rs565885142 89774359 + 89774339 89774379 41 GTTTTCTTGCATGGGGTGTTCAGACTTTCACCTCGGGCAAA GTTTTCTTGCATGGGGTGTTCAGAATTTCACCTCGGGCAAA < 41bp 0.65314600934121 0.908420255973897 0.79704195 0.72110415 prediction 0.510548493265375 Functional Gain - TRIM49C ENSG00000204449 CDS Human protein_coding chr11:89774359 chr11:89774363 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_107318 0 0 0 0 0 unknown 0.500231643999564 0.500231643921092 0 0 hm5C_site_60463 DeepMRMD:0;iRNA_m5C:0 60464 chrX 148797543 148797543 1 + C A KIRC 148797542 + 148797522 148797562 41 CTTCAGGCCCAAGAAGAAGACCTGGGCCTGGTGGGTGCACA CTTCAGGCCCAAGAAGAAGACATGGGCCTGGTGGGTGCACA < 41bp 0.513089487862345 0.768361769809356 0.58592093 0.4428134 prediction 0.510544563894021 Functional Gain - MAGEA11 ENSG00000185247 CDS Human protein_coding chrX:148797542 chrX:148797543 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_107319 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60464 DeepMRMD:0;iRNA_m5C:0 60465 chr9 35751973 35751973 1 + C G rs570413538 35751972 + 35751952 35751992 41 GTTTTCAGTCAGCTTACAGACCGAGGAGCGTGTACAGCCTG GTTTTCAGTCAGCTTACAGACGGAGGAGCGTGTACAGCCTG < 41bp 0.597728595512027 0.852999641343407 0.38589537 0.890422 prediction 0.510542091662761 Functional Gain - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35751972 chr9:35751973 synonymous SNV . 0 22 hm5C_associated_SNPs_107320 0 0 1 0 1 Cytosol 0.500231644117836 0.500231644125572 0.780844 1.5472512160386e-11 hm5C_site_60465 DeepMRMD:0.780844;iRNA_m5C:1.5472512160386e-11 60466 chr11 4661635 4661635 1 + C G LUAD 4661634 + 4661614 4661654 41 GAAGCTGTCCTGTACTGACACCAGGGTCAATGTGGTTTATG GAAGCTGTCCTGTACTGACACGAGGGTCAATGTGGTTTATG < 41bp 0.44987712499593 0.755265386595596 0.18003851 0.37167585 prediction 0.510530773191193 Functional Gain - OR51D1 ENSG00000197428 CDS Human protein_coding chr11:4661634 chr11:4661635 synonymous SNV . 0 22 hm5C_associated_SNPs_107321 0 0 0 0 0 unknown 0.500231643921091 0.500231643921092 0 2.66453525910038e-15 hm5C_site_60466 DeepMRMD:0;iRNA_m5C:2.66453525910038e-15 60467 chr16 67859872 67859872 1 + T C READ 67859870 + 67859850 67859890 41 GTTCGCAAGGAGCATGAGATCCTCATGCAGCTGCACATGAG GTTCGCAAGGAGCATGAGATCCCCATGCAGCTGCACATGAG < 41bp 0.547966705930648 0.803228893952871 0.24935988 0.10442436 prediction 0.510524376044446 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859870 chr16:67859872 nonsynonymous SNV 0.410 4 23 hm5C_associated_SNPs_107322 0 0 0 0 1 exosome 0.500242062063448 0.500228692873261 0 0 hm5C_site_60467 DeepMRMD:0;iRNA_m5C:0 60468 chr15 75189518 75189518 1 + C A UCEC 75189514 + 75189494 75189534 41 TCAGGAAGACCCCTACCTCTCAATCTATGACCCCCCTGTAC TCAGGAAGACCCCTACCTCTCAATATATGACCCCCCTGTAC < 41bp 0.344731966708656 0.755257956889164 0.07722902 0.06444663 prediction 0.510515913778328 Functional Gain - MPI ENSG00000178802 CDS Human protein_coding chr15:75189514 chr15:75189518 synonymous SNV . 0 25 hm5C_associated_SNPs_107323 0 0 1 0 1 Ribosome 0.500231645214254 0.500231643901364 0 0 hm5C_site_60468 DeepMRMD:0;iRNA_m5C:0 60469 chr7 99912179 99912179 1 + C A rs185181307 99912178 + 99912158 99912198 41 CTGGGGTAGATCCCAGCCCCCCGCGTAGGTCCCTTGGCTGC CTGGGGTAGATCCCAGCCCCCAGCGTAGGTCCCTTGGCTGC < 41bp 0.502216235556306 0.757465027129709 0.35463488 0.8318658 prediction 0.510497583146806 Functional Gain - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99912178 chr7:99912179 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_107324 0 0 0 0 1 nucleoplasm 0.500231643921092 0.500231643921092 0.6637316 0 hm5C_site_60469 DeepMRMD:0.6637316;iRNA_m5C:0 60470 chr19 56671700 56671700 1 + T G rs147321718 56671698 + 56671678 56671718 41 CCTCCTCCACCTGCGCCTCCCTTGTCTGAACTTCCCAACGC CCTCCTCCACCTGCGCCTCCCTGGTCTGAACTTCCCAACGC < 41bp 0.428874341954624 0.755244080424418 0.020964593 0.12210122 prediction 0.510488160848837 Functional Gain - ZNF444 ENSG00000167685 UTR3 Human protein_coding chr19:56671698 chr19:56671700 . . 0 23 hm5C_associated_SNPs_107325 0 0 1 0 0 Cytosol 0.50023134696907 0.500196440742246 0 0 hm5C_site_60470 DeepMRMD:0;iRNA_m5C:0 60471 chr11 4608496 4608496 1 + C A LUAD 4608495 + 4608475 4608515 41 CTGCTGACCATGGCTTTTGACCGCTATGTAGCCATCTGCAA CTGCTGACCATGGCTTTTGACAGCTATGTAGCCATCTGCAA < 41bp 0.49915264539196 0.755232255294533 0.07313293 0.4311815 prediction 0.510464510589066 Functional Gain - OR52I2 ENSG00000226288 CDS Human protein_coding chr11:4608495 chr11:4608496 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_107326 0 0 0 0 0 unknown 0.500231494694194 0.500231586161817 0 1.82935247394767e-07 hm5C_site_60471 DeepMRMD:0;iRNA_m5C:1.82935247394767e-07 60472 chrX 8433568 8433568 1 + C A LUAD 8433567 + 8433547 8433587 41 AGAGGAAGTCCTCCTCTCAGCCGAGCCCCAGTGACCCGAAG AGAGGAAGTCCTCCTCTCAGCAGAGCCCCAGTGACCCGAAG < 41bp 0.498151663793327 0.755231543025704 0.38160944 0.6579149 prediction 0.510463086051408 Functional Gain - VCX3B ENSG00000205642 CDS Human protein_coding chrX:8433567 chrX:8433568 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_107327 0 0 0 0 1 exosome 0.50023164392038 0.500231643921082 0.3158298 1.4033219031262e-12 hm5C_site_60472 DeepMRMD:0.3158298;iRNA_m5C:1.4033219031262e-12 60473 chr19 17654171 17654171 1 + T G LUSC 17654168 + 17654148 17654188 41 CCTTCCTGCAGCTGGCTGACCAGTGTCTGACGACGGCCCTC CCTTCCTGCAGCTGGCTGACCAGGGTCTGACGACGGCCCTC < 41bp 0.666055667651486 0.921279233915303 0.13879457 0.914866 prediction 0.510447132527634 Functional Gain - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17654168 chr19:17654171 nonsynonymous SNV 0.969 0 24 hm5C_associated_SNPs_107328 0 0 0 0 2 exosome 0.500231643407311 0.500231643922486 0.829732 1.03035002751994e-09 hm5C_site_60473 DeepMRMD:0.829732;iRNA_m5C:1.03035002751994e-09 60474 chr17 72945525 72945525 1 + C G rs186094674 72945524 + 72945504 72945544 41 GGGCCTGAGGCTGCCCACCCCCGGCAGAACCTCGAAGTGCC GGGCCTGAGGCTGCCCACCCCGGGCAGAACCTCGAAGTGCC < 41bp 0.581392917130646 0.836614123583393 0.18692678 0.89957684 prediction 0.510442412905496 Functional Gain - OTOP3 ENSG00000182938 UTR3 Human protein_coding chr17:72945524 chr17:72945525 . . 0 22 hm5C_associated_SNPs_107329 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.79915368 2.22044604925031e-16 hm5C_site_60474 DeepMRMD:0.79915368;iRNA_m5C:2.22044604925031e-16 60475 chr12 120995448 120995448 1 + C T STAD 120995447 + 120995427 120995467 41 GTTGGTGGCTTTGCCCAAATCCAAATGGATGAATGTAGACC GTTGGTGGCTTTGCCCAAATCTAAATGGATGAATGTAGACC < 41bp 0.506982656897715 0.762187946124789 0.22745144 0.19723183 prediction 0.510410578454147 Functional Gain - RNF10 ENSG00000022840 CDS Human protein_coding chr12:120995447 chr12:120995448 synonymous SNV . 0 22 hm5C_associated_SNPs_107330 0 0 1 4 1 Ribosome 0.500231643921569 0.500231643921327 0 0 hm5C_site_60475 DeepMRMD:0;iRNA_m5C:0 60476 chr15 78730689 78730689 1 + C A LUAD 78730685 + 78730665 78730705 41 ATATGGTCTCCGGCGATGGACGCCCCAAAAGCAGGTCAGTT ATATGGTCTCCGGCGATGGACGCCACAAAAGCAGGTCAGTT < 41bp 0.368545688294632 0.755201210691488 0.22249213 0.14474851 prediction 0.510402421382977 Functional Gain - IREB2 ENSG00000136381 CDS Human protein_coding chr15:78730685 chr15:78730689 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_107331 0 0 1 0 1 Cytosol 0.500231643919929 0.500231644271542 0 7.03226143983215e-10 hm5C_site_60476 DeepMRMD:0;iRNA_m5C:7.03226143983215e-10 60477 chr21 44452219 44452219 1 + C G rs111320868 44452215 + 44452195 44452235 41 CCCGACCTCAGGTGATCTGCCTGCCTCAGCCTCCCAAAGTG CCCGACCTCAGGTGATCTGCCTGCGTCAGCCTCCCAAAGTG < 41bp 0.564261094778613 0.819451565271347 0.14110917 0.4212297 prediction 0.510380940985468 Functional Gain - PKNOX1 ENSG00000160199 UTR3 Human protein_coding chr21:44452215 chr21:44452219 . . 0 25 hm5C_associated_SNPs_107332 0 0 0 0 0 Ribosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_60477 DeepMRMD:0;iRNA_m5C:0 60478 chr2 241808313 241808313 1 + C G BRCA 241808312 + 241808292 241808332 41 CACAAGCTGCTGGTGACCCCCCCCAAGGCCCTGCTCAAGCC CACAAGCTGCTGGTGACCCCCGCCAAGGCCCTGCTCAAGCC < 41bp 0.60243732091636 0.857624160300986 0.21116781 0.894471 prediction 0.510373678769251 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241808312 chr2:241808313 nonsynonymous SNV 0.009 5 22 hm5C_associated_SNPs_107333 0 0 0 0 0 Cytosol 0.500231643921093 0.500231643921092 0.788942 0 hm5C_site_60478 DeepMRMD:0.788942;iRNA_m5C:0 60479 chr11 128782012 128782012 1 + C A rs7102584 128782008 + 128781988 128782028 41 CTGATCATCTCCCATGAGATCAACCAGAAGAGCCCTTTCTG CTGATCATCTCCCATGAGATCAACAAGAAGAGCCCTTTCTG < 41bp 0.331436801804725 0.755186468251914 0.10805863 0.11274254 prediction 0.510372936503828 Functional Gain - KCNJ5 ENSG00000120457 CDS Human protein_coding chr11:128782008 chr11:128782012 nonsynonymous SNV 0.990 2 25 hm5C_associated_SNPs_107334 0 0 0 0 1 Ribosome 0.500231643921099 0.500231643921092 0 0 hm5C_site_60479 DeepMRMD:0;iRNA_m5C:0 60480 chr12 6494204 6494204 1 + T A OV 6494200 + 6494180 6494220 41 CGTTCTAGGCACCTATGTCTCAGCTAAATGTAGCCGCATCC CGTTCTAGGCACCTATGTCTCAGCAAAATGTAGCCGCATCC < 41bp 0.594257151789213 0.849435753062652 0.26614487 0.4125241 prediction 0.510357202546877 Functional Gain - LTBR ENSG00000111321 CDS Human protein_coding chr12:6494200 chr12:6494204 synonymous SNV . 0 25 hm5C_associated_SNPs_107335 0 0 0 0 2 Endoplasmic reticulum 0.500231992986244 0.500247702188847 0 3.14184052045974e-05 hm5C_site_60480 DeepMRMD:0;iRNA_m5C:3.14184052045974e-05 60481 chr10 12200045 12200045 1 + C G SKCM 12200044 + 12200024 12200064 41 TCCAACCTGTATGTTATTTCCCAGATGCTGTCTGTTCGATT TCCAACCTGTATGTTATTTCCGAGATGCTGTCTGTTCGATT < 41bp 0.597166536485271 0.852345130312461 0.12745413 0.45509568 prediction 0.510357187654381 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12200044 chr10:12200045 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_107336 0 0 1 1 1 Ribosome 0.500231643917988 0.500231643913498 0 0 hm5C_site_60481 DeepMRMD:0;iRNA_m5C:0 60482 chr12 123346044 123346044 1 + C T rs34167842 123346043 + 123346023 123346063 41 GCCCAGAAGCCCAGCGTGGCCCCCAGACAGGACCACCAGGT GCCCAGAAGCCCAGCGTGGCCTCCAGACAGGACCACCAGGT < 41bp 0.504707739113727 0.759882978069797 0.09232977 0.940071 prediction 0.510350477912141 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123346043 chr12:123346044 nonsynonymous SNV 0.145 2 22 hm5C_associated_SNPs_107337 0 0 0 0 0 Nucleus 0.500231643921244 0.50023164323434 0.880142 0 hm5C_site_60482 DeepMRMD:0.880142;iRNA_m5C:0 60483 chr7 106508576 106508576 1 + C A LUAD 106508572 + 106508552 106508592 41 CCCGCGCATGGCGGAGGTGGCCAGCCGCGACCCCAAGCTCT CCCGCGCATGGCGGAGGTGGCCAGACGCGACCCCAAGCTCT < 41bp 0.363196635132495 0.755158396435516 0.90022904 0.92803806 prediction 0.510316792871032 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106508572 chr7:106508576 nonsynonymous SNV 0.086 0 25 hm5C_associated_SNPs_107338 0 0 1 0 0 Cytosol 0.500231643495567 0.50023097809787 0.0556180399999999 0 hm5C_site_60483 DeepMRMD:0.0556180399999999;iRNA_m5C:0 60484 chr15 77324734 77324734 1 + C G rs149195362 77324733 + 77324713 77324753 41 GAGCACGGGCACAGAGCCCCCCGGTGAGGTCCGGCTTGCGG GAGCACGGGCACAGAGCCCCCGGGTGAGGTCCGGCTTGCGG < 41bp 0.597226410037591 0.852382022410975 0.20740786 0.8420017 prediction 0.510311224746768 Functional Gain - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77324733 chr15:77324734 synonymous SNV . 0 22 hm5C_associated_SNPs_107339 1 0 1 0 2 exosome 0.500231643921093 0.500231643921092 0.6840034 0 hm5C_site_60484 DeepMRMD:0.6840034;iRNA_m5C:0 not specified not specified 60485 chr4 89574052 89574052 1 + C G LUSC 89574048 + 89574028 89574068 41 TTCTTCACCTGGGGAAAGAACAGCCATGGGCAGCTTGGCTT TTCTTCACCTGGGGAAAGAACAGCGATGGGCAGCTTGGCTT < 41bp 0.57871964923469 0.833874911243384 0.48035896 0.8279419 prediction 0.510310524017388 Functional Gain - HERC3 ENSG00000138641 CDS Human protein_coding chr4:89574048 chr4:89574052 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_107340 0 0 1 0 1 Ribosome 0.500231643921097 0.500231643921093 0.6558838 0 hm5C_site_60485 DeepMRMD:0.6558838;iRNA_m5C:0 60486 chr22 32352435 32352435 1 + T G STAD 32352432 + 32352412 32352452 41 AAATGAAGGGTGATTACTACCGCTACTTAGCAGAGGTCGCT AAATGAAGGGTGATTACTACCGCGACTTAGCAGAGGTCGCT < 41bp 0.649441872951591 0.90459382622674 0.03630939 0.2379401 prediction 0.510303906550297 Functional Gain - YWHAH ENSG00000128245 CDS Human protein_coding chr22:32352432 chr22:32352435 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_107341 0 0 1 0 0 Ribosome 0.500231627697068 0.500231757520366 0 2.59646596223462e-07 hm5C_site_60486 DeepMRMD:0;iRNA_m5C:2.59646596223462e-07 60487 chr17 4645075 4645075 1 + C A BRCA 4645074 + 4645054 4645094 41 GCTCTGGGGATCCCCGAAAGCCCCGACAGCTTACTGTGGGA GCTCTGGGGATCCCCGAAAGCACCGACAGCTTACTGTGGGA < 41bp 0.499998960834341 0.755150014383221 0.069695115 0.06832522 prediction 0.510300028766441 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4645074 chr17:4645075 nonsynonymous SNV 0.982 4 22 hm5C_associated_SNPs_107342 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921236 0 2.87547763377916e-13 hm5C_site_60487 DeepMRMD:0;iRNA_m5C:2.87547763377916e-13 60488 chr6 97561863 97561863 1 + C A LUAD 97561859 + 97561839 97561879 41 AGCATCTATGCACAGCCTGTCTGGCAGACTCGCAGGACCAA AGCATCTATGCACAGCCTGTCTGGAAGACTCGCAGGACCAA < 41bp 0.336684202794566 0.755145730728069 0.2694829 0.5471354 prediction 0.510291461456138 Functional Gain - KLHL32 ENSG00000186231 CDS Human protein_coding chr6:97561859 chr6:97561863 nonsynonymous SNV 0.997 4 25 hm5C_associated_SNPs_107343 0 0 0 0 0 chromatin 0.500232246582879 0.500231643874116 0.0942708000000001 0 hm5C_site_60488 DeepMRMD:0.0942708000000001;iRNA_m5C:0 60489 chr22 48972368 48972368 1 + C A HNSC 48972364 + 48972344 48972384 41 TTCCTCGTCCTAGTGATCCACGCGCAGTTCCTCAAAGAAGG TTCCTCGTCCTAGTGATCCACGCGAAGTTCCTCAAAGAAGG < 41bp 0.362170097523246 0.755144459278723 0.010497898 0.07836896 prediction 0.510288918557446 Functional Gain - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:48972364 chr22:48972368 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_107344 0 0 0 0 1 membrane 0.500231643921092 0.50023164392109 0 0 hm5C_site_60489 DeepMRMD:0;iRNA_m5C:0 60490 chr1 200877931 200877931 1 + T G BLCA 200877929 + 200877909 200877949 41 GGCCTCTCCCACCCCAAACCCTTGAGGGTCTGCAGCCAACA GGCCTCTCCCACCCCAAACCCTGGAGGGTCTGCAGCCAACA < 41bp 0.628232458230495 0.883368277378392 0.035918683 0.40435866 prediction 0.510271638295793 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200877929 chr1:200877931 synonymous SNV . 0 23 hm5C_associated_SNPs_107345 0 0 0 0 1 cytosol 0.500231643922082 0.500231660169248 0 3.24943332241645e-08 hm5C_site_60490 DeepMRMD:0;iRNA_m5C:3.24943332241645e-08 60491 chr17 43922500 43922500 1 + C A SARC 43922496 + 43922476 43922516 41 CTGGTGCCCGGGTGAGGATTCCCCCCACCAGGCCCAGCTCC CTGGTGCCCGGGTGAGGATTCCCCACACCAGGCCCAGCTCC < 41bp 0.363924443202169 0.755130849435526 0.22404042 0.24675524 prediction 0.510261698871052 Functional Gain - SPPL2C ENSG00000185294 CDS Human protein_coding chr17:43922496 chr17:43922500 synonymous SNV . 0 25 hm5C_associated_SNPs_107346 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_60491 DeepMRMD:0;iRNA_m5C:0 60492 chrX 37026709 37026709 1 + T A SKCM 37026705 + 37026685 37026725 41 ACGCTTGTTTGTCGCCGTGACGAGTTTTTACTCCCCAAAAT ACGCTTGTTTGTCGCCGTGACGAGATTTTACTCCCCAAAAT < 41bp 0.565248561369654 0.820376404399178 0.19705987 0.7852644 prediction 0.510255686059048 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37026705 chrX:37026709 nonsynonymous SNV 0.001 2 25 hm5C_associated_SNPs_107347 0 0 0 0 0 unknown 0.500231807878814 0.500231644834015 0.5705288 0 hm5C_site_60492 DeepMRMD:0.5705288;iRNA_m5C:0 60493 chr3 46620747 46620747 1 + T A OV 46620743 + 46620723 46620763 41 GCTGGGCCATCAGGAATTTGCTCGTCCATCTCGGGGATACC GCTGGGCCATCAGGAATTTGCTCGACCATCTCGGGGATACC < 41bp 0.60326719348777 0.85838942673632 0.12287319 0.17323941 prediction 0.5102444664971 Functional Gain - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46620743 chr3:46620747 synonymous SNV . 0 25 hm5C_associated_SNPs_107348 0 0 0 0 1 Ribosome 0.500231643921093 0.500231643921093 0 1.33226762955019e-15 hm5C_site_60493 DeepMRMD:0;iRNA_m5C:1.33226762955019e-15 60494 chr7 108214930 108214930 1 + T A rs138263970 108214926 + 108214906 108214946 41 TATAAGCTATGGGACATATGCTGATCACAGGCTATATTCAT TATAAGCTATGGGACATATGCTGAACACAGGCTATATTCAT < 41bp 0.552817091303555 0.807937786098475 0.13481084 0.10772291 prediction 0.510241389589841 Functional Gain - DNAJB9 ENSG00000128590 UTR3 Human protein_coding chr7:108214926 chr7:108214930 . . 0 25 hm5C_associated_SNPs_107349 0 0 1 0 0 Endoplasmic reticulum 0.500226136140045 0.500231643892374 0 1.10155046579852e-05 hm5C_site_60494 DeepMRMD:0;iRNA_m5C:1.10155046579852e-05 60495 chr4 38051410 38051410 1 + C T SKCM 38051409 + 38051389 38051429 41 GCAAACACCCTGAGTCACTTCCCCATCGAATGCCAGGAACC GCAAACACCCTGAGTCACTTCTCCATCGAATGCCAGGAACC < 41bp 0.534659971329084 0.789775237043591 0.47437215 0.9612213 prediction 0.510230531429013 Functional Gain - TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38051409 chr4:38051410 nonsynonymous SNV 0.048 4 22 hm5C_associated_SNPs_107350 0 0 1 0 0 Nucleus 0.500231603569897 0.500229917255714 0.9224426 0 hm5C_site_60495 DeepMRMD:0.9224426;iRNA_m5C:0 60496 chr19 4217037 4217037 1 + C A LUSC 4217033 + 4217013 4217053 41 AAACTAAGCCCACAGGAGCTCAGGCCACAGACACAGAGACC AAACTAAGCCCACAGGAGCTCAGGACACAGACACAGAGACC < 41bp 0.359462764958271 0.755113784485848 0.7235064 0.77366614 prediction 0.510227568971695 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4217033 chr19:4217037 nonsynonymous SNV 0.079 1 25 hm5C_associated_SNPs_107351 0 0 0 0 0 exosome 0.500231652116936 0.500231643921485 0.10031948 0 hm5C_site_60496 DeepMRMD:0.10031948;iRNA_m5C:0 60497 chr14 65878622 65878622 1 + C A rs569537470 65878618 + 65878598 65878638 41 TGGGGCGGCGCGCTCCGGTCCTCCCGCTCAGCTGGCGGTCT TGGGGCGGCGCGCTCCGGTCCTCCAGCTCAGCTGGCGGTCT < 41bp 0.462195016081723 0.755108396207638 0.13717255 0.89094317 prediction 0.510216792415275 Functional Gain - FUT8-AS1 ENSG00000033170 UTR5 Human protein_coding chr14:65878618 chr14:65878622 . . 0 25 hm5C_associated_SNPs_107352 0 0 0 0 1 unknown 0.500230295854322 0.500231638264491 0.78188634 2.68482033827233e-06 hm5C_site_60497 DeepMRMD:0.78188634;iRNA_m5C:2.68482033827233e-06 60498 chr17 19555037 19555037 1 + T C CESC 19555035 + 19555015 19555055 41 AGTGGTGCTGATAATCGGAGCTTGGAATTACCCCTTCGTTC AGTGGTGCTGATAATCGGAGCTCGGAATTACCCCTTCGTTC < 41bp 0.502283545491548 0.757389862987359 0.10156658 0.15682161 prediction 0.510212634991622 Functional Gain - ALDH3A2 ENSG00000072210 CDS Human protein_coding chr17:19555035 chr17:19555037 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_107353 0 0 1 0 1 Ribosome 0.500231643921092 0.50023164388628 0 0 hm5C_site_60498 DeepMRMD:0;iRNA_m5C:0 60499 chr22 35782786 35782786 1 + C G rs141730669 35782785 + 35782765 35782805 41 TACTTCCCAGAAGAGCTGCACCGCAAGGCTGCCCTGGAGCA TACTTCCCAGAAGAGCTGCACGGCAAGGCTGCCCTGGAGCA < 41bp 0.601253777510752 0.856353584106616 0.2681244 0.35329616 prediction 0.510199613191729 Functional Gain - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35782785 chr22:35782786 nonsynonymous SNV 0.779 4 22 hm5C_associated_SNPs_107354 0 0 1 0 0 exosome 0.500231643920776 0.500231643921092 0 6.32383034826489e-13 hm5C_site_60499 DeepMRMD:0;iRNA_m5C:6.32383034826489e-13 60500 chr2 97019092 97019092 1 + C G BRCA 97019088 + 97019068 97019108 41 ATCGCCAGATCTGCCCTTCCCTGGCCGGGTTCCAGTTTACA ATCGCCAGATCTGCCCTTCCCTGGGCGGGTTCCAGTTTACA < 41bp 0.453841436781646 0.75508513879145 0.1091916 0.20397148 prediction 0.510170277582901 Functional Gain - NCAPH ENSG00000121152 CDS Human protein_coding chr2:97019088 chr2:97019092 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_107355 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0 6.66133814775094e-16 hm5C_site_60500 DeepMRMD:0;iRNA_m5C:6.66133814775094e-16 60501 chr1 35250931 35250931 1 + T A STAD 35250927 + 35250907 35250947 41 ACCGAGAAGAAAATCTTCACCTACTTCATGGTGGGCGCCTC ACCGAGAAGAAAATCTTCACCTACATCATGGTGGGCGCCTC < 41bp 0.418861969988061 0.755072644590254 0.06598422 0.17472577 prediction 0.510145289180508 Functional Gain - GJB3 ENSG00000188910 CDS Human protein_coding chr1:35250927 chr1:35250931 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_107356 0 0 0 0 0 Ribosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_60501 DeepMRMD:0;iRNA_m5C:0 60502 chr20 43120352 43120352 1 + C A rs552475771 43120348 + 43120328 43120368 41 CACACACTGCTGAAAAGGCCCAAGCAGGGCAAGTGGGATGG CACACACTGCTGAAAAGGCCCAAGAAGGGCAAGTGGGATGG < 41bp 0.387399136121543 0.755070109786967 0.031297415 0.09435183 prediction 0.510140219573934 Functional Gain - TTPAL ENSG00000124120 UTR3 Human protein_coding chr20:43120348 chr20:43120352 . . 0 25 hm5C_associated_SNPs_107357 0 0 1 0 0 Ribosome 0.500231643921089 0.500231643921091 0 3.5527136788005e-15 hm5C_site_60502 DeepMRMD:0;iRNA_m5C:3.5527136788005e-15 60503 chr2 16080806 16080806 1 + C G rs188129461 16080805 + 16080785 16080825 41 TCCGAGGACACCCCCGCCCCCCCGGCCCACCCGGAGACACC TCCGAGGACACCCCCGCCCCCGCGGCCCACCCGGAGACACC < 41bp 0.477203368556263 0.755068812666086 0.0769864 0.23820275 prediction 0.510137625332173 Functional Gain - MYCN ENSG00000233718 ncRNA_intronic Human protein_coding chr2:16080805 chr2:16080806 . . 0 22 hm5C_associated_SNPs_107358 0 0 0 0 1 Cytosol 0.500231643922132 0.500231648380648 0 8.91703111349784e-09 hm5C_site_60503 DeepMRMD:0;iRNA_m5C:8.91703111349784e-09 60504 chr2 234545179 234545179 1 + C A LUSC 234545175 + 234545155 234545195 41 GCTGCAGTTCTCTCATGGCTCGCGCAGGGTGGACCAGCCCC GCTGCAGTTCTCTCATGGCTCGCGAAGGGTGGACCAGCCCC < 41bp 0.644909160275858 0.89997613024049 0.054540426 0.37100366 prediction 0.510133939929264 Functional Gain - UGT1A10 ENSG00000242515 CDS Human protein_coding chr2:234545175 chr2:234545179 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_107359 0 0 0 0 0 exosome 0.500231643938162 0.500231643921025 0 0 hm5C_site_60504 DeepMRMD:0;iRNA_m5C:0 60505 chr5 82373399 82373399 1 + C A rs28383113 82373395 + 82373375 82373415 41 AAAACCTTGATCTGTGAAAGCGGGCGTTTTGGAAGATACCG AAAACCTTGATCTGTGAAAGCGGGAGTTTTGGAAGATACCG < 41bp 0.60678218864849 0.861848029839871 0.89162946 0.89442736 prediction 0.510131682382762 Functional Gain - XRCC4 ENSG00000152422 UTR5 Human protein_coding chr5:82373395 chr5:82373399 . . 0 25 hm5C_associated_SNPs_107360 0 0 1 0 2 Ribosome 0.500231652337808 0.50023191925626 0.00559580000000004 5.33836902905094e-07 hm5C_site_60505 DeepMRMD:0.00559580000000004;iRNA_m5C:5.33836902905094e-07 60506 chr11 3405445 3405445 1 + C A LUAD 3405444 + 3405424 3405464 41 CTACAGTTCCTGTCCCATGACCAGGGCCAGATCACCAAGGA CTACAGTTCCTGTCCCATGACAAGGGCCAGATCACCAAGGA < 41bp 0.509587899991754 0.764651051482822 0.55319065 0.2990973 prediction 0.510126302982135 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3405444 chr11:3405445 . . 0 22 hm5C_associated_SNPs_107361 0 0 1 2 2 unknown 0.500232020984635 0.50023164396529 0 0 hm5C_site_60506 DeepMRMD:0;iRNA_m5C:0 60507 chr1 161130715 161130715 1 + C T LIHC 161130714 + 161130694 161130734 41 TCCCCTGCCTGGCTCACCACCCCCAACAGTGGCTTTGCCTC TCCCCTGCCTGGCTCACCACCTCCAACAGTGGCTTTGCCTC < 41bp 0.548161180941203 0.803194725763438 0.22779676 0.97660536 prediction 0.51006708964447 Functional Gain - USP21 ENSG00000143258 CDS Human protein_coding chr1:161130714 chr1:161130715 synonymous SNV . 0 22 hm5C_associated_SNPs_107362 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643921125 0.95321072 6.50590692430342e-14 hm5C_site_60507 DeepMRMD:0.95321072;iRNA_m5C:6.50590692430342e-14 60508 chr12 57969038 57969038 1 + C G HNSC 57969034 + 57969014 57969054 41 ACCGGGCGGGAGCTCTCATCCTGCCAGCTCCTCATCTCTCA ACCGGGCGGGAGCTCTCATCCTGCGAGCTCCTCATCTCTCA < 41bp 0.580879905267769 0.835896441021221 0.17364919 0.37133798 prediction 0.510033071506905 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57969034 chr12:57969038 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_107363 0 0 1 0 1 Cytosol 0.500231643827252 0.500231643921035 0 1.87566628895297e-10 hm5C_site_60508 DeepMRMD:0;iRNA_m5C:1.87566628895297e-10 60509 chr1 206331137 206331137 1 + C A UCEC 206331133 + 206331113 206331153 41 CTTCATTCGACAGTTTTACTCAGTCTTTGACCGTGGGAATA CTTCATTCGACAGTTTTACTCAGTATTTGACCGTGGGAATA < 41bp 0.367028012904593 0.75500794721084 0.51143205 0.57117176 prediction 0.510015894421681 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206331133 chr1:206331137 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_107364 0 0 0 0 0 Endoplasmic reticulum 0.500240993177319 0.500231643763772 0.11947942 0 hm5C_site_60509 DeepMRMD:0.11947942;iRNA_m5C:0 60510 chr17 76228019 76228019 1 + C A rs576298174 76228015 + 76227995 76228035 41 GCGCCGCCGCGCCCGCCCGCCCCCCGTCCCCCGGCTCCCGG GCGCCGCCGCGCCCGCCCGCCCCCAGTCCCCCGGCTCCCGG < 41bp 0.541997411468616 0.797003516067095 0.10154462 0.11251068 prediction 0.510012209196957 Functional Gain - TMEM235 ENSG00000204278 CDS Human protein_coding chr17:76228015 chr17:76228019 synonymous SNV . 0 25 hm5C_associated_SNPs_107365 0 0 0 0 0 exosome 0.500231643920647 0.500231643920872 0 4.49640324973188e-13 hm5C_site_60510 DeepMRMD:0;iRNA_m5C:4.49640324973188e-13 60511 chr17 41571178 41571178 1 + C T SKCM 41571177 + 41571157 41571197 41 ACTTGTCCCTTGTCAGTGCTCCTGAAGTAGAGGACGACTCA ACTTGTCCCTTGTCAGTGCTCTTGAAGTAGAGGACGACTCA < 41bp 0.507218873145082 0.762214111062253 0.07857719 0.084349364 prediction 0.509990475834341 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41571177 chr17:41571178 nonsynonymous SNV 0.995 1 22 hm5C_associated_SNPs_107366 0 0 1 0 1 Cytosol 0.500231643900453 0.500231643885407 0 0 hm5C_site_60511 DeepMRMD:0;iRNA_m5C:0 60512 chr5 42801313 42801313 1 + C G KIRP 42801309 + 42801289 42801329 41 GATTCTCTGAAAGCTCACTGCTGCCAAGGTGCTGATGTCCA GATTCTCTGAAAGCTCACTGCTGCGAAGGTGCTGATGTCCA < 41bp 0.520852663260657 0.775844707246132 0.060524106 0.12410155 prediction 0.509984087970949 Functional Gain - SELENOP ENSG00000250722 CDS Human protein_coding chr5:42801309 chr5:42801313 unknown 0.073 0 25 hm5C_associated_SNPs_107367 0 0 0 0 0 unknown 0.50023164361198 0.50023092114348 0 0 hm5C_site_60512 DeepMRMD:0;iRNA_m5C:0 60513 chr1 1336372 1336372 1 + C G rs551796448 1336371 + 1336351 1336391 41 CTGTTGTCCAGGACTGTTTACCAAGGGCTGACAGGCACTGA CTGTTGTCCAGGACTGTTTACGAAGGGCTGACAGGCACTGA < 41bp 0.466908738287305 0.754988007254936 0.88536674 0.8837679 prediction 0.509976014509872 Functional Gain - LOC148413 ENSG00000224870 UTR3 Human processed_transcript chr1:1336371 chr1:1336372 . . 0 22 hm5C_associated_SNPs_107368 0 0 1 0 0 Ribosome 0.500231643921088 0.500231643921092 0 9.76996261670138e-15 hm5C_site_60513 DeepMRMD:0;iRNA_m5C:9.76996261670138e-15 60514 chr2 18112727 18112727 1 + T G HNSC 18112724 + 18112704 18112744 41 CTCCTCGTTTGAAGAGTCGTCTCTGTTTGAGAAAGAGCTGG CTCCTCGTTTGAAGAGTCGTCTCGGTTTGAGAAAGAGCTGG < 41bp 0.366894435907859 0.754985805432264 0.033194005 0.17709315 prediction 0.509971610864528 Functional Gain - KCNS3 ENSG00000170745 CDS Human protein_coding chr2:18112724 chr2:18112727 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_107369 0 0 1 0 0 Cytosol 0.500239535709953 0.500231643921093 0 0 hm5C_site_60514 DeepMRMD:0;iRNA_m5C:0 60515 chr19 35831819 35831819 1 + C T UCEC 35831818 + 35831798 35831838 41 GTGACCACAGTGATTCAAAACCCCATGCCGATTCGAGAAGG GTGACCACAGTGATTCAAAACTCCATGCCGATTCGAGAAGG < 41bp 0.520051092053961 0.775032628548749 0.08041206 0.9548533 prediction 0.509963072989576 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35831818 chr19:35831819 nonsynonymous SNV 0.022 0 22 hm5C_associated_SNPs_107370 0 0 0 0 1 Endoplasmic reticulum 0.500231643594133 0.500231643979088 0.9097066 7.69911023823511e-10 hm5C_site_60515 DeepMRMD:0.9097066;iRNA_m5C:7.69911023823511e-10 60516 chr17 8215754 8215754 1 + C T SKCM 8215753 + 8215733 8215773 41 TCACCCTGCACGCCTCTGCTCCCCATGGCTGGAGTCCTGGC TCACCCTGCACGCCTCTGCTCTCCATGGCTGGAGTCCTGGC < 41bp 0.516465032409961 0.77144436427933 0.14291051 0.9622786 prediction 0.509958663738738 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8215753 chr17:8215754 nonsynonymous SNV 0.030 1 22 hm5C_associated_SNPs_107371 0 0 0 0 0 exosome 0.500231611511451 0.500230886195232 0.9245572 0 hm5C_site_60516 DeepMRMD:0.9245572;iRNA_m5C:0 60517 chr3 47448093 47448093 1 + C G HNSC 47448089 + 47448069 47448109 41 GATGAAGATCTACTACTTCGCAGCCGTGGCTCATGTGAGGG GATGAAGATCTACTACTTCGCAGCGGTGGCTCATGTGAGGG < 41bp 0.461861086917888 0.754976482987087 0.30999976 0.8515073 prediction 0.509952965974174 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47448089 chr3:47448093 synonymous SNV . 0 25 hm5C_associated_SNPs_107372 0 0 1 0 1 chromatin 0.500231640156995 0.500231643921093 0.7030146 7.52819562244156e-09 hm5C_site_60517 DeepMRMD:0.7030146;iRNA_m5C:7.52819562244156e-09 60518 chr2 71187158 71187158 1 + C A STAD 71187157 + 71187137 71187177 41 GACGTCATGAACAGCATTGCCCGCGGCCAGAAGATCCCCAT GACGTCATGAACAGCATTGCCAGCGGCCAGAAGATCCCCAT < 41bp 0.51998370756441 0.774952075481217 0.28306034 0.88050663 prediction 0.509936735833614 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187157 chr2:71187158 nonsynonymous SNV 0.693 4 22 hm5C_associated_SNPs_107373 0 0 0 0 2 Endoplasmic reticulum 0.50023164394035 0.500231643804496 0.76101326 0 hm5C_site_60518 DeepMRMD:0.76101326;iRNA_m5C:0 60519 chr21 47552201 47552201 1 + C G rs117725825 47552200 + 47552180 47552220 41 TCAATGCCATCGTGCGCAGCCCGCGTGGCGGGGCCCGGAGG TCAATGCCATCGTGCGCAGCCGGCGTGGCGGGGCCCGGAGG < 41bp 0.58405124495533 0.839017432802003 0.26232797 0.6792917 prediction 0.509932375693346 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47552200 chr21:47552201 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_107374 0 0 1 0 0 Cytosol 0.500231636442401 0.500231643921447 0.3585834 1.49580916541936e-08 hm5C_site_60519 DeepMRMD:0.3585834;iRNA_m5C:1.49580916541936e-08 60520 chr17 6930071 6930071 1 + C G PRAD 6930067 + 6930047 6930087 41 ATCTGCGGAGCCCGTTTTAACCGGCCAGCAAACCTGAAAAC ATCTGCGGAGCCCGTTTTAACCGGGCAGCAAACCTGAAAAC < 41bp 0.561910209986489 0.816875674444731 0.50239027 0.93710876 prediction 0.509930928916484 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6930067 chr17:6930071 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_107375 0 0 0 0 2 Endoplasmic reticulum 0.500231643924053 0.500231643921093 0.86943698 0 hm5C_site_60520 DeepMRMD:0.86943698;iRNA_m5C:0 60521 chr19 41725258 41725258 1 + C A rs369717581 41725254 + 41725234 41725274 41 ACAGCCCGGCCCTGCCCCCTCCCCCGCTGGGAGCCCAACAA ACAGCCCGGCCCTGCCCCCTCCCCAGCTGGGAGCCCAACAA < 41bp 0.436162013123214 0.754961656785552 0.19663492 0.22647691 prediction 0.509923313571104 Functional Gain - AXL ENSG00000167601 UTR5 Human protein_coding chr19:41725254 chr19:41725258 . . 0 25 hm5C_associated_SNPs_107376 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_60521 DeepMRMD:0;iRNA_m5C:0 60522 chr1 167095752 167095752 1 + C A LUAD 167095751 + 167095731 167095771 41 CTGGAGCTGAACCGCCCGGACCACGGCAGGAGGCGCCGCGC CTGGAGCTGAACCGCCCGGACAACGGCAGGAGGCGCCGCGC < 41bp 0.517860525820654 0.772811461279878 0.5479286 0.36675173 prediction 0.509901870918447 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167095751 chr1:167095752 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_107377 0 0 0 0 0 Endoplasmic reticulum 0.500231643921098 0.500231643921092 0 0 hm5C_site_60522 DeepMRMD:0;iRNA_m5C:0 60523 chr1 16974657 16974657 1 + C G KIRP 16974656 + 16974636 16974676 41 ATGCGCGTGGGCTTTTGCTACCAGATCCGGCGTTGTACAGA ATGCGCGTGGGCTTTTGCTACGAGATCCGGCGTTGTACAGA < 41bp 0.597307562690432 0.852256059435141 0.41896197 0.61223775 prediction 0.50989699348942 Functional Gain - MST1P2 ENSG00000186301 ncRNA_exonic Human unprocessed_pseudogene chr1:16974656 chr1:16974657 . . 0 22 hm5C_associated_SNPs_107378 0 0 0 0 0 unknown 0.500231643922983 0.500231654397436 0.2244755 2.09489041669286e-08 hm5C_site_60523 DeepMRMD:0.2244755;iRNA_m5C:2.09489041669286e-08 60524 chr5 434306 434306 1 + C T SKCM 434305 + 434285 434325 41 ACCCTCCCCTCTGCCACTTTCCCCAGAGGAGCCTGCAGCAC ACCCTCCCCTCTGCCACTTTCTCCAGAGGAGCCTGCAGCAC < 41bp 0.520203804224124 0.775147676523724 0.30563506 0.95718515 prediction 0.509887744599199 Functional Gain - AHRR ENSG00000063438 CDS Human protein_coding chr5:434305 chr5:434306 nonsynonymous SNV 0.003 1 22 hm5C_associated_SNPs_107379 0 0 1 0 0 chromatin 0.500231643921092 0.50023164391965 0.9143703 0 hm5C_site_60524 DeepMRMD:0.9143703;iRNA_m5C:0 60525 chr8 76471075 76471075 1 + T C DLBC 76471073 + 76471053 76471093 41 GATCCAGTAAAAATTAAGAACATGAGGTTCCAAGTGCAGAT GATCCAGTAAAAATTAAGAACACGAGGTTCCAAGTGCAGAT < 41bp 0.471611148109146 0.754917661601028 0.1603097 0.12223542 prediction 0.509835323202056 Functional Gain - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76471073 chr8:76471075 nonsynonymous SNV 0.999 2 23 hm5C_associated_SNPs_107380 0 0 0 0 1 cytosol 0.500231643921091 0.500231643921092 0 3.5527136788005e-15 hm5C_site_60525 DeepMRMD:0;iRNA_m5C:3.5527136788005e-15 60526 chr22 43559152 43559152 1 + C G rs373324032 43559151 + 43559131 43559171 41 AGAGGTGGCCCCACCTGAGCCCCCACCCGGGAGCAGTGTCC AGAGGTGGCCCCACCTGAGCCGCCACCCGGGAGCAGTGTCC < 41bp 0.535598353659761 0.79050842360347 0.09864536 0.8442532 prediction 0.509820139887419 Functional Gain - TSPO ENSG00000100300 UTR3 Human protein_coding chr22:43559151 chr22:43559152 . . 0 22 hm5C_associated_SNPs_107381 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643932129 0.6885064 2.20725659971777e-11 hm5C_site_60526 DeepMRMD:0.6885064;iRNA_m5C:2.20725659971777e-11 60527 chr16 30980721 30980721 1 + C T LUSC 30980720 + 30980700 30980740 41 GGCAAGACCCAGGGCAAGCACCGCAAGTCCTTTGCTCTGGA GGCAAGACCCAGGGCAAGCACTGCAAGTCCTTTGCTCTGGA < 41bp 0.523360101033975 0.778253673710311 0.30311337 0.2631122 prediction 0.509787145352672 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30980720 chr16:30980721 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_107382 0 0 1 0 2 Cytosol 0.500231643921093 0.500231629748602 0 0 hm5C_site_60527 DeepMRMD:0;iRNA_m5C:0 60528 chr16 23366760 23366760 1 + C G UCS 23366756 + 23366736 23366776 41 GCTAGTAGAGATGAGCTACCCCGGCGAGCAGATGATCCTGG GCTAGTAGAGATGAGCTACCCCGGGGAGCAGATGATCCTGG < 41bp 0.57171352656199 0.826602556250287 0.92153734 0.920593 prediction 0.509778059376595 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23366756 chr16:23366760 synonymous SNV . 0 25 hm5C_associated_SNPs_107383 0 0 0 0 1 exosome 0.500231643921107 0.500231643921092 0 0 hm5C_site_60528 DeepMRMD:0;iRNA_m5C:0 60529 chr3 93761945 93761945 1 + T C COAD 93761943 + 93761923 93761963 41 ACCTGAAACATAAAATGGAGCATGAGCAAATAGAGACACAA ACCTGAAACATAAAATGGAGCACGAGCAAATAGAGACACAA < 41bp 0.517051711847122 0.771930268699474 0.07766563 0.09297764 prediction 0.509757113704704 Functional Gain - ARL13B ENSG00000169379 CDS Human protein_coding chr3:93761943 chr3:93761945 synonymous SNV . 0 23 hm5C_associated_SNPs_107384 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921087 0 0 hm5C_site_60529 DeepMRMD:0;iRNA_m5C:0 60530 chr1 15702189 15702189 1 + C G rs140832655 15702188 + 15702168 15702208 41 AAATACTACTGGATGCAAAACCGGATTTGCCAACTCTCTCA AAATACTACTGGATGCAAAACGGGATTTGCCAACTCTCTCA < 41bp 0.462276712896563 0.75487573695709 0.5826057 0.8215531 prediction 0.509751473914181 Functional Gain - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15702188 chr1:15702189 nonsynonymous SNV 0.965 3 22 hm5C_associated_SNPs_107385 0 0 0 0 2 cytosol 0.500231643921092 0.500231643921092 0.4778948 8.88178419700125e-16 hm5C_site_60530 DeepMRMD:0.4778948;iRNA_m5C:8.88178419700125e-16 60531 chr7 44080026 44080026 1 + C A rs529666467 44080022 + 44080002 44080042 41 CCCCAGACCAGGGCTCCTGGCAGCCCCCTCCCCTTAGGCTC CCCCAGACCAGGGCTCCTGGCAGCACCCTCCCCTTAGGCTC < 41bp 0.370669311820909 0.754873490184206 0.27699843 0.37834847 prediction 0.509746980368413 Functional Gain - LINC00957 ENSG00000235314 ncRNA_exonic Human lincRNA chr7:44080022 chr7:44080026 . . 0 25 hm5C_associated_SNPs_107386 0 0 0 0 0 unknown 0.50023164392048 0.50023163505405 0 0 hm5C_site_60531 DeepMRMD:0;iRNA_m5C:0 60532 chr16 25083104 25083104 1 + C G rs111441133 25083103 + 25083083 25083123 41 GGAAGCATGATGGGTACCACCCGAATGGAGGGGATGCAGTG GGAAGCATGATGGGTACCACCGGAATGGAGGGGATGCAGTG < 41bp 0.564715132352811 0.819588354312196 0.17391229 0.59943295 prediction 0.509746443918768 Functional Gain - LINC02175;LCMT1-AS1 ENSG00000263326 ncRNA_exonic Human unprocessed_pseudogene chr16:25083103 chr16:25083104 . . 0 22 hm5C_associated_SNPs_107387 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.1988659 0 hm5C_site_60532 DeepMRMD:0.1988659;iRNA_m5C:0 60533 chrX 144910113 144910113 1 + C G rs2748590 144910112 + 144910092 144910132 41 TCTTCACCCTCCACGCCACCCCCTACTACTCACTCTCACCC TCTTCACCCTCCACGCCACCCGCTACTACTCACTCTCACCC < 41bp 0.578744439387723 0.833609987655516 0.015762419 0.08484936 prediction 0.509731096535586 Functional Gain - TMEM257 ENSG00000221870 UTR3 Human protein_coding chrX:144910112 chrX:144910113 . . 0 22 hm5C_associated_SNPs_107388 0 0 0 0 0 unknown 0.500231643281647 0.500231643922935 0 1.28257426901257e-09 hm5C_site_60533 DeepMRMD:0;iRNA_m5C:1.28257426901257e-09 Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy) 60534 chr2 216176824 216176824 1 + C G rs28366035 216176823 + 216176803 216176843 41 TACCTGCGCACGTGGTGCCGCCGCTGCTGCCTCCCGCTCGC TACCTGCGCACGTGGTGCCGCGGCTGCTGCCTCCCGCTCGC < 41bp 0.456731105040543 0.754863401147868 0.5386634 0.871122 prediction 0.509726802295735 Functional Gain - ATIC ENSG00000138363 UTR5 Human protein_coding chr2:216176823 chr2:216176824 . . 0 22 hm5C_associated_SNPs_107389 0 0 1 0 1 chromatin 0.500231643907624 0.500231643326048 0.6649172 0 hm5C_site_60534 DeepMRMD:0.6649172;iRNA_m5C:0 60535 chr7 150069034 150069034 1 + C A LUSC 150069030 + 150069010 150069050 41 CCGGTGGAGATGCCGTCGACCGCCCCTTCCAGTGTGCCTGT CCGGTGGAGATGCCGTCGACCGCCACTTCCAGTGTGCCTGT < 41bp 0.661097353172213 0.915947287163012 0.14101979 0.6595962 prediction 0.509699867981599 Functional Gain - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150069030 chr7:150069034 nonsynonymous SNV 0.604 3 25 hm5C_associated_SNPs_107390 0 0 1 0 0 Endoplasmic reticulum 0.500237197922022 0.500550577771121 0.3191924 0.000626759698197477 hm5C_site_60535 DeepMRMD:0.3191924;iRNA_m5C:0.000626759698197477 60536 chr11 119059235 119059235 1 + C A UCEC 119059234 + 119059214 119059254 41 TCTCCCTCACTGTCGTCGACCCTGAGGCGGACCGCTTCTTC TCTCCCTCACTGTCGTCGACCATGAGGCGGACCGCTTCTTC < 41bp 0.495783253182739 0.754848231194799 0.043614745 0.06922519 prediction 0.509696462389598 Functional Gain - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119059234 chr11:119059235 nonsynonymous SNV 0.478 3 22 hm5C_associated_SNPs_107391 0 0 0 0 1 exosome 0.500231643431667 0.50023164617294 0 5.48254486254507e-09 hm5C_site_60536 DeepMRMD:0;iRNA_m5C:5.48254486254507e-09 60537 chr10 45430462 45430462 1 + C A rs17417442 45430461 + 45430441 45430481 41 CCGCATAGTCCCCTCCCTCGCCGAAGGTCTGGATGATGGGG CCGCATAGTCCCCTCCCTCGCAGAAGGTCTGGATGATGGGG < 41bp 0.522470335168301 0.777311883438914 0.3637997 0.46098506 prediction 0.509683096541227 Functional Gain - TMEM72 ENSG00000187783 CDS Human protein_coding chr10:45430461 chr10:45430462 synonymous SNV . 0 22 hm5C_associated_SNPs_107392 0 0 0 0 0 Nucleus 0.500231655459893 0.500231643921093 0 0 hm5C_site_60537 DeepMRMD:0;iRNA_m5C:0 60538 chr4 71232504 71232504 1 + C A LUAD 71232500 + 71232480 71232520 41 TGGTCCAGGGAGATTTCCACCACCCCTTTCTCCACCCTATG TGGTCCAGGGAGATTTCCACCACCACTTTCTCCACCCTATG < 41bp 0.354277652889614 0.754841065980573 0.20275679 0.24332774 prediction 0.509682131961146 Functional Gain - SMR3A ENSG00000109208 CDS Human protein_coding chr4:71232500 chr4:71232504 synonymous SNV . 0 25 hm5C_associated_SNPs_107393 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_60538 DeepMRMD:0;iRNA_m5C:0 60539 chr19 44531259 44531259 1 + C G SKCM 44531258 + 44531238 44531278 41 CCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTTGAGAA CCTGCCCAGAGGAAGCTGTACGGAGATGTGATGCTTGAGAA < 41bp 0.56142238329387 0.816263152288221 0.18437004 0.8915193 prediction 0.509681537988703 Functional Gain - ZNF222 ENSG00000159885;ENSG00000267022 CDS Human other chr19:44531258 chr19:44531259 nonsynonymous SNV 0.927 2 22 hm5C_associated_SNPs_107394 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.7830386 0 hm5C_site_60539 DeepMRMD:0.7830386;iRNA_m5C:0 60540 chr2 170591661 170591661 1 + T G LUAD 170591659 + 170591639 170591679 41 ACTCTTCAGTGTCCTTCAGGCATAATTTTCCATTGTCACCG ACTCTTCAGTGTCCTTCAGGCAGAATTTTCCATTGTCACCG < 41bp 0.425583571175147 0.754837905520248 0.07085425 0.15174165 prediction 0.509675811040495 Functional Gain - KLHL23;PHOSPHO2-KLHL23 ENSG00000213160 CDS Human protein_coding chr2:170591659 chr2:170591661 nonsynonymous SNV 1.000 0 23 hm5C_associated_SNPs_107395 0 0 1 0 0 unknown 0.5002316439211 0.500231643921093 0 0 hm5C_site_60540 DeepMRMD:0;iRNA_m5C:0 60541 chr5 149011705 149011705 1 + T C UCEC 149011703 + 149011683 149011723 41 GGTTATGTGCCTTCTGGCTTCTTGGCCAGGGCTCGGAGCCC GGTTATGTGCCTTCTGGCTTCTCGGCCAGGGCTCGGAGCCC < 41bp 0.52668460678991 0.781519081062746 0.15985426 0.24729642 prediction 0.509668948545672 Functional Gain - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149011703 chr5:149011705 nonsynonymous SNV 0.582 4 23 hm5C_associated_SNPs_107396 0 0 0 0 0 Endoplasmic reticulum 0.500231643930729 0.500231643924971 0 0 hm5C_site_60541 DeepMRMD:0;iRNA_m5C:0 60542 chr8 24321436 24321436 1 + T C UCEC 24321434 + 24321414 24321454 41 TACAGTGAAACATTCTACTCCATGAAAGGAGAAGCGTTCAC TACAGTGAAACATTCTACTCCACGAAAGGAGAAGCGTTCAC < 41bp 0.482356002098061 0.754832121496153 0.011183262 0.020350724 prediction 0.509664242992305 Functional Gain - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24321434 chr8:24321436 nonsynonymous SNV 0.032 0 23 hm5C_associated_SNPs_107397 0 0 0 0 2 exosome 0.5002316447041 0.500231643881839 0 0 hm5C_site_60542 DeepMRMD:0;iRNA_m5C:0 60543 chr8 11644438 11644438 1 + C G rs535687631 11644434 + 11644414 11644454 41 GTTGGGACCACGGGTGTGAGCCACCGCGCCCAGCTAGCTCC GTTGGGACCACGGGTGTGAGCCACGGCGCCCAGCTAGCTCC < 41bp 0.479798029920999 0.75483072032563 0.082710326 0.30802536 prediction 0.509661440651261 Functional Gain - NEIL2 ENSG00000154328 UTR3 Human protein_coding chr8:11644434 chr8:11644438 . . 0 25 hm5C_associated_SNPs_107398 0 0 1 2 0 Ribosome 0.50023164391875 0.500231643868252 0 0 hm5C_site_60543 DeepMRMD:0;iRNA_m5C:0 60544 chr11 77919935 77919935 1 + C T UCEC 77919934 + 77919914 77919954 41 TTCCCCAGAGAACTTCCTCTCCGCATCCTGGACGCCCTGGT TTCCCCAGAGAACTTCCTCTCTGCATCCTGGACGCCCTGGT < 41bp 0.510979825890568 0.765806508845815 0.44339073 0.3354459 prediction 0.509653365910493 Functional Gain - USP35 ENSG00000118369 CDS Human protein_coding chr11:77919934 chr11:77919935 synonymous SNV . 0 22 hm5C_associated_SNPs_107399 0 0 0 0 2 nucleolus 0.500231649331147 0.50023164392148 0 0 hm5C_site_60544 DeepMRMD:0;iRNA_m5C:0 60545 chr5 54720592 54720592 1 + T G COAD 54720589 + 54720569 54720609 41 ATATTGTGTTTGCTGCCAGCCTCTACTTGTAGAGTCAGCTA ATATTGTGTTTGCTGCCAGCCTCGACTTGTAGAGTCAGCTA < 41bp 0.399523460617832 0.754826131179285 0.26344025 0.1773333 prediction 0.509652262358569 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54720589 chr5:54720592 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_107400 0 0 1 0 1 Nucleus 0.500233332579512 0.500231650804795 0 0 hm5C_site_60545 DeepMRMD:0;iRNA_m5C:0 60546 chr7 48080992 48080992 1 + C T BRCA 48080991 + 48080971 48081011 41 CGTGGATGCCCCACCAGCGTCCCAGATCCCAGGTCTCAGCA CGTGGATGCCCCACCAGCGTCTCAGATCCCAGGTCTCAGCA < 41bp 0.500413542022522 0.755234023953261 0.41982976 0.3119061 prediction 0.509640963861479 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48080991 chr7:48080992 synonymous SNV . 0 22 hm5C_associated_SNPs_107401 0 0 0 0 1 exosome 0.500269261467468 0.500334935051833 0 0.000131347168730089 hm5C_site_60546 DeepMRMD:0;iRNA_m5C:0.000131347168730089 60547 chr2 131521381 131521381 1 + C A BLCA 131521377 + 131521357 131521397 41 ACCCGGGCACCACAGGCCTGCTCGCCGGAGAGAGCAAGGCC ACCCGGGCACCACAGGCCTGCTCGACGGAGAGAGCAAGGCC < 41bp 0.348713674124903 0.754817170702806 0.472588 0.7323556 prediction 0.509634341405611 Functional Gain - AMER3 ENSG00000178171 CDS Human protein_coding chr2:131521377 chr2:131521381 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_107402 0 0 0 0 0 Nucleus 0.500231643921094 0.500231643919748 0.4647112 0 hm5C_site_60547 DeepMRMD:0.4647112;iRNA_m5C:0 60548 chr7 94038704 94038704 1 + C G HNSC 94038703 + 94038683 94038723 41 CCCGTGGTGAAGTGGGTCTTCCAGGCCTCTCCGGCCCCGTT CCCGTGGTGAAGTGGGTCTTCGAGGCCTCTCCGGCCCCGTT < 41bp 0.445925665787714 0.754810038463793 0.91111135 0.9340135 prediction 0.509620076927586 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94038703 chr7:94038704 nonsynonymous SNV 0.995 3 22 hm5C_associated_SNPs_107403 0 0 0 0 1 Endoplasmic reticulum 0.500231644135293 0.500231643921093 0.0458043000000001 0 hm5C_site_60548 DeepMRMD:0.0458043000000001;iRNA_m5C:0 60549 chr1 4772157 4772157 1 + C A LUAD 4772153 + 4772133 4772173 41 GTGGACAGCCAGCGCGGGTCCCGGCCCCGGTGTGGAGCCCC GTGGACAGCCAGCGCGGGTCCCGGACCCGGTGTGGAGCCCC < 41bp 0.655315782343511 0.910124779014305 0.34044766 0.40792412 prediction 0.509617993341587 Functional Gain - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4772153 chr1:4772157 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_107404 0 0 0 0 0 exosome 0.500231643076222 0.500231415417824 0 0 hm5C_site_60549 DeepMRMD:0;iRNA_m5C:0 60550 chr14 95030285 95030285 1 + C A LUSC 95030284 + 95030264 95030304 41 CTGAAGTTCCTTGCAAAATTCCTGAATGACACCATGGCCGT CTGAAGTTCCTTGCAAAATTCATGAATGACACCATGGCCGT < 41bp 0.524092702313935 0.778893559222083 0.19257867 0.32768112 prediction 0.509601713816296 Functional Gain - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95030284 chr14:95030285 nonsynonymous SNV 0.000 3 22 hm5C_associated_SNPs_107405 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60550 DeepMRMD:0;iRNA_m5C:0 60551 chr13 46092966 46092966 1 + T C SKCM 46092964 + 46092944 46092984 41 AGGCTGAATAGCAACAATGCCTTGATAGAGTTCTTGTTGGA AGGCTGAATAGCAACAATGCCTCGATAGAGTTCTTGTTGGA < 41bp 0.583746465233759 0.838526071032536 0.103628516 0.8298319 prediction 0.509559211597555 Functional Gain - COG3 ENSG00000136152 CDS Human protein_coding chr13:46092964 chr13:46092966 nonsynonymous SNV 1.000 5 23 hm5C_associated_SNPs_107406 0 0 1 0 2 Nucleus 0.500231644131033 0.500769856213239 0.6596638 0.00107642416441123 hm5C_site_60551 DeepMRMD:0.6596638;iRNA_m5C:0.00107642416441123 60552 chr4 41258978 41258978 1 + C A rs9321 41258974 + 41258954 41258994 41 TCGTCTTCCCTAGGCTATTTCTGCCGGGCGCTCCGCGAAGA TCGTCTTCCCTAGGCTATTTCTGCAGGGCGCTCCGCGAAGA < 41bp 0.65003029139548 0.90479987817315 0.14496532 0.18754143 prediction 0.509539173555339 Functional Gain - UCHL1 ENSG00000154277 UTR5 Human protein_coding chr4:41258974 chr4:41258978 . . 0 25 hm5C_associated_SNPs_107407 0 0 1 0 1 Ribosome 0.500231643921093 0.500231643921066 0 0 hm5C_site_60552 DeepMRMD:0;iRNA_m5C:0 60553 chr11 55432767 55432767 1 + T A GBM 55432763 + 55432743 55432783 41 TAGCCACAGTGCTGGAAAATCTACTTATTGTGGTAACTATT TAGCCACAGTGCTGGAAAATCTACATATTGTGGTAACTATT < 41bp 0.448863861909853 0.754763649352694 0.1592842 0.90376043 prediction 0.509527298705388 Functional Gain - OR4C6 ENSG00000181903 CDS Human protein_coding chr11:55432763 chr11:55432767 nonsynonymous SNV 0.010 2 25 hm5C_associated_SNPs_107408 0 0 0 0 0 unknown 0.500231643920887 0.500231643921103 0.80752086 4.30322444344711e-13 hm5C_site_60553 DeepMRMD:0.80752086;iRNA_m5C:4.30322444344711e-13 60554 chr19 41903699 41903699 1 + T G rs45500792 41903697 + 41903677 41903717 41 GCAGCCCCGAATCTAGCCTACGTGAGTGCCGGACCGCTGAG GCAGCCCCGAATCTAGCCTACGGGAGTGCCGGACCGCTGAG < 41bp 0.629974971249393 0.884734176507165 0.73535174 0.8823391 prediction 0.509518410515543 Functional Gain - BCKDHA ENSG00000248098 UTR5 Human protein_coding chr19:41903697 chr19:41903699 . . 0 23 hm5C_associated_SNPs_107409 2 0 0 0 0 Cytosol 0.500231643921545 0.500231643921092 0.29397472 0 hm5C_site_60554 DeepMRMD:0.29397472;iRNA_m5C:0 not specified not specified 60555 chr1 240072501 240072501 1 + C A LUAD 240072497 + 240072477 240072517 41 AGACAGTCGGTCATTTTTCACAAGCGCGCACCCGAGCAGGC AGACAGTCGGTCATTTTTCACAAGAGCGCACCCGAGCAGGC < 41bp 0.374084166009013 0.754755203347788 0.57137054 0.7196981 prediction 0.509510406695575 Functional Gain - CHRM3 ENSG00000133019 CDS Human protein_coding chr1:240072497 chr1:240072501 nonsynonymous SNV 0.878 1 25 hm5C_associated_SNPs_107410 0 0 0 0 0 exosome 0.500231635802313 0.500231643929606 0.29665512 1.62545850113105e-08 hm5C_site_60555 DeepMRMD:0.29665512;iRNA_m5C:1.62545850113105e-08 60556 chr15 81436160 81436160 1 + C A THCA 81436159 + 81436139 81436179 41 AATATGAAGGCTTCCCCGTCCCGGTGAGTGCAGCATCGGGA AATATGAAGGCTTCCCCGTCCAGGTGAGTGCAGCATCGGGA < 41bp 0.507328669414498 0.762081074732839 0.41660786 0.8927008 prediction 0.50950481063668 Functional Gain - CFAP161 ENSG00000156206 CDS Human protein_coding chr15:81436159 chr15:81436160 nonsynonymous SNV 0.034 0 22 hm5C_associated_SNPs_107411 0 0 0 0 0 chromatin 0.500231643922499 0.5002316439233 0.7854016 1.60227386913903e-12 hm5C_site_60556 DeepMRMD:0.7854016;iRNA_m5C:1.60227386913903e-12 60557 chr11 1857200 1857200 1 + T A rs34141314 1857196 + 1857176 1857216 41 CTGCAGCTCTCCCTGGAGTTCGACTTTGGAAGCCAGGAGGT CTGCAGCTCTCCCTGGAGTTCGACATTGGAAGCCAGGAGGT < 41bp 0.60169583495109 0.856443741390945 0.31809703 0.55405354 prediction 0.509495812879711 Functional Gain - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1857196 chr11:1857200 nonsynonymous SNV 0.674 2 25 hm5C_associated_SNPs_107412 0 0 0 0 2 exosome 0.500231643921093 0.500231643921092 0.10810708 0 hm5C_site_60557 DeepMRMD:0.10810708;iRNA_m5C:0 60558 chr10 47086862 47086862 1 + C A UCEC 47086858 + 47086838 47086878 41 AACAGAAGCAAACCCCTGGGCACCCCATACAACTTCTCTGA AACAGAAGCAAACCCCTGGGCACCACATACAACTTCTCTGA < 41bp 0.340364114378816 0.754745254986186 0.058727264 0.08307895 prediction 0.509490509972372 Functional Gain - NPY4R;NPY4R2 ENSG00000204174 CDS Human protein_coding chr10:47086858 chr10:47086862 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_107413 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_60558 DeepMRMD:0;iRNA_m5C:0 60559 chr11 61563621 61563621 1 + T A BRCA 61563617 + 61563597 61563637 41 GCATCGAGGAGATCGTGCGGCGACTTGACCCCAACAAGTAC GCATCGAGGAGATCGTGCGGCGACATGACCCCAACAAGTAC < 41bp 0.418412087796006 0.754742769382832 0.18579674 0.17409831 prediction 0.509485538765665 Functional Gain - FEN1 ENSG00000168496 CDS Human protein_coding chr11:61563617 chr11:61563621 nonsynonymous SNV 0.779 3 25 hm5C_associated_SNPs_107414 0 0 1 0 0 Cytosol 0.500209811235103 0.500220467876074 0 2.13132819417705e-05 hm5C_site_60559 DeepMRMD:0;iRNA_m5C:2.13132819417705e-05 60560 chr5 140626625 140626625 1 + C G BLCA 140626621 + 140626601 140626641 41 GGTCACCTACTCGCTGCTGCCGCCCCGGGACCCGCACCTGC GGTCACCTACTCGCTGCTGCCGCCGCGGGACCCGCACCTGC < 41bp 0.54890164384136 0.80363962030866 0.13817152 0.62753 prediction 0.5094759529346 Functional Gain - PCDHB15 ENSG00000113248 CDS Human protein_coding chr5:140626621 chr5:140626625 synonymous SNV . 0 25 hm5C_associated_SNPs_107415 0 0 0 0 0 exosome 0.500231643919052 0.500231644617263 0.25506 1.39642142293894e-09 hm5C_site_60560 DeepMRMD:0.25506;iRNA_m5C:1.39642142293894e-09 60561 chr16 3314124 3314124 1 + C A rs183184512 3314120 + 3314100 3314140 41 CCCCTCCCGCCGACGCCCCACGGACCCCACGCCCGAGCGGA CCCCTCCCGCCGACGCCCCACGGAACCCACGCCCGAGCGGA < 41bp 0.402078133337187 0.754735618604374 0.3840323 0.8639009 prediction 0.509471237208748 Functional Gain - LINC00921 ENSG00000006194 intronic Human protein_coding chr16:3314120 chr16:3314124 . . 0 25 hm5C_associated_SNPs_107416 0 0 0 0 0 unknown 0.500232758232287 0.500231558995841 0.7278018 0 hm5C_site_60561 DeepMRMD:0.7278018;iRNA_m5C:0 60562 chr20 34203979 34203979 1 + C A LUSC 34203975 + 34203955 34203995 41 CTCGTCCTCGCGCAAGCACACGCCCAACTTTTTCAGCGAGA CTCGTCCTCGCGCAAGCACACGCCAAACTTTTTCAGCGAGA < 41bp 0.347315994207309 0.754733108898691 0.14934757 0.40511206 prediction 0.509466217797383 Functional Gain - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34203975 chr20:34203979 synonymous SNV . 0 25 hm5C_associated_SNPs_107417 0 0 1 0 0 chromatin 0.500231643679181 0.500231662475241 0 3.75921198614293e-08 hm5C_site_60562 DeepMRMD:0;iRNA_m5C:3.75921198614293e-08 60563 chr17 78978200 78978200 1 + C G rs368730664 78978199 + 78978179 78978219 41 CCGGGATCACCAGGGACCACCCGGCGCGCTCCCCGGGAATC CCGGGATCACCAGGGACCACCGGGCGCGCTCCCCGGGAATC < 41bp 0.585139645244125 0.839870921232922 0.92723346 0.93347675 prediction 0.509462551977593 Functional Gain - CHMP6;BAIAP2-AS1 ENSG00000175911 CDS Human other chr17:78978199 chr17:78978200 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_107418 0 0 0 0 0 unknown 0.500231643018276 0.500231353977898 0.01248658 0 hm5C_site_60563 DeepMRMD:0.01248658;iRNA_m5C:0 60564 chr17 49338178 49338178 1 + T G COAD 49338176 + 49338156 49338196 41 CGGCTCCGGCAGCGGAACCGCCTGAGGCTGGAGGAGGACAA CGGCTCCGGCAGCGGAACCGCCGGAGGCTGGAGGAGGACAA < 41bp 0.636036612158893 0.890761690447275 0.6485858 0.8959992 prediction 0.509450156576763 Functional Gain - UTP18 ENSG00000011260 CDS Human protein_coding chr17:49338176 chr17:49338178 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_107419 0 0 1 0 0 Ribosome 0.500231642886295 0.500231439416417 0.4948268 0 hm5C_site_60564 DeepMRMD:0.4948268;iRNA_m5C:0 60565 chr10 102822575 102822575 1 + T G rs11547671 102822573 + 102822553 102822593 41 GGCGGGCAGGGTGCGCGACGCGTGCGGCTGCTGCTGGGAAT GGCGGGCAGGGTGCGCGACGCGGGCGGCTGCTGCTGGGAAT < 41bp 0.633560533508525 0.888280580188084 0.5084068 0.9023846 prediction 0.509440093359117 Functional Gain - KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102822573 chr10:102822575 nonsynonymous SNV 0.998 5 23 hm5C_associated_SNPs_107420 0 0 1 0 0 nucleus 0.50023167432366 0.500231643920346 0.7879556 0 hm5C_site_60565 DeepMRMD:0.7879556;iRNA_m5C:0 60566 chr20 3782684 3782684 1 + C G rs61746575 3782680 + 3782660 3782700 41 GCGGCCCCAGGACAGGGACACGCCCGTGCAGAATAAGCGGA GCGGCCCCAGGACAGGGACACGCCGGTGCAGAATAAGCGGA < 41bp 0.475493358412616 0.754715304291525 0.1394172 0.2770778 prediction 0.50943060858305 Functional Gain - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3782680 chr20:3782684 synonymous SNV . 0 25 hm5C_associated_SNPs_107421 0 0 1 0 1 Ribosome 0.500231637552823 0.5002316439211 0 1.27365538116209e-08 hm5C_site_60566 DeepMRMD:0;iRNA_m5C:1.27365538116209e-08 60567 chr18 59221438 59221438 1 + T A LUSC 59221434 + 59221414 59221454 41 TCCTGGCAGTGCTGGTGTTGCTCATTTTGTCCATGAGGCGG TCCTGGCAGTGCTGGTGTTGCTCAATTTGTCCATGAGGCGG < 41bp 0.420849903931075 0.754710202245678 0.034295827 0.040878654 prediction 0.509420404491356 Functional Gain - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59221434 chr18:59221438 nonsynonymous SNV 0.961 2 25 hm5C_associated_SNPs_107422 0 0 0 0 1 nucleus 0.500230622472933 0.500231762829666 0 2.28071346564107e-06 hm5C_site_60567 DeepMRMD:0;iRNA_m5C:2.28071346564107e-06 60568 chr19 50209265 50209265 1 + C A HNSC 50209264 + 50209244 50209284 41 CCCGAAACAGCCTGCTTTCCCCGAGAGCCCTGGAGCAGCAG CCCGAAACAGCCTGCTTTCCCAGAGAGCCCTGGAGCAGCAG < 41bp 0.50694525979855 0.761647182498713 0.4977774 0.8791065 prediction 0.509403845400326 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50209264 chr19:50209265 nonsynonymous SNV 0.990 5 22 hm5C_associated_SNPs_107423 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.758213 0 hm5C_site_60568 DeepMRMD:0.758213;iRNA_m5C:0 60569 chr2 95539334 95539334 1 + C A UCEC 95539333 + 95539313 95539353 41 ATGCAAGCAGTGAGCCAGATCCGGTGGGTAGAGGGCTGCCC ATGCAAGCAGTGAGCCAGATCAGGTGGGTAGAGGGCTGCCC < 41bp 0.517504803473073 0.772203840233949 0.79396534 0.856541 prediction 0.509398073521752 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95539333 chr2:95539334 synonymous SNV . 0 22 hm5C_associated_SNPs_107424 0 0 0 0 2 chromatin 0.500231643921038 0.500231643911202 0.12515132 0 hm5C_site_60569 DeepMRMD:0.12515132;iRNA_m5C:0 60570 chr19 55889085 55889085 1 + C G STAD 55889081 + 55889061 55889101 41 GGTCTGCTACCACCAGCGTCCAGACGGTGAGGGCTCCTGGC GGTCTGCTACCACCAGCGTCCAGAGGGTGAGGGCTCCTGGC < 41bp 0.558172945349272 0.812871695522555 0.8901632 0.9080601 prediction 0.509397500346567 Functional Gain - TMEM190 ENSG00000160472 CDS Human protein_coding chr19:55889081 chr19:55889085 nonsynonymous SNV 0.554 4 25 hm5C_associated_SNPs_107425 0 0 0 0 1 exosome 0.500231643921091 0.500231643921093 0.0357938 2.66453525910038e-15 hm5C_site_60570 DeepMRMD:0.0357938;iRNA_m5C:2.66453525910038e-15 60571 chr19 3282169 3282169 1 + C G CESC 3282168 + 3282148 3282188 41 CTGTCCACCTCGGGCAGCTACCTGAGTCCCGGCGTGGCCTT CTGTCCACCTCGGGCAGCTACGTGAGTCCCGGCGTGGCCTT < 41bp 0.609012378765141 0.86371014894758 0.8600656 0.70618844 prediction 0.509395540364877 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3282168 chr19:3282169 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_107426 0 0 0 0 2 exosome 0.500231643921099 0.500231643921093 0 0 hm5C_site_60571 DeepMRMD:0;iRNA_m5C:0 60572 chr2 226447108 226447108 1 + C A COAD 226447104 + 226447084 226447124 41 GCTGCTTTGCGACATCCCTCCGCCCTTCCCCAACCTGCTTT GCTGCTTTGCGACATCCCTCCGCCATTCCCCAACCTGCTTT < 41bp 0.335669687410238 0.754695209048886 0.33283186 0.6646861 prediction 0.509390418097771 Functional Gain - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226447104 chr2:226447108 synonymous SNV . 0 25 hm5C_associated_SNPs_107427 0 0 0 0 0 nucleus 0.500231647428127 0.500231643921103 0.3293722 0 hm5C_site_60572 DeepMRMD:0.3293722;iRNA_m5C:0 60573 chr3 9691417 9691417 1 + C A HNSC 9691413 + 9691393 9691433 41 GGCCAAGGATGGCAGCGGGACCGGCGGCTCTAAGGTGAGAT GGCCAAGGATGGCAGCGGGACCGGAGGCTCTAAGGTGAGAT < 41bp 0.369283802393154 0.754694964769606 0.76269627 0.8627933 prediction 0.509389929539211 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9691413 chr3:9691417 synonymous SNV . 0 25 hm5C_associated_SNPs_107428 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.20019406 0 hm5C_site_60573 DeepMRMD:0.20019406;iRNA_m5C:0 60574 chr15 23261859 23261859 1 + C A LUAD 23261855 + 23261835 23261875 41 AGAGAGTGGCAGGAGCGCTCCAGGCCCAGGTCAAAAACAAT AGAGAGTGGCAGGAGCGCTCCAGGACCAGGTCAAAAACAAT < 41bp 0.337765429453182 0.754691013226396 0.15828988 0.18008986 prediction 0.509382026452793 Functional Gain - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261855 chr15:23261859 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_107429 0 0 0 0 1 unknown 0.500231202683619 0.500231586994185 0 7.68621131630454e-07 hm5C_site_60574 DeepMRMD:0;iRNA_m5C:7.68621131630454e-07 60575 chr5 156712439 156712439 1 + C T LUSC 156712438 + 156712418 156712458 41 TGCTTGAAGAGCTTCCCCTCCCCGACCAGCAGCCATGCATC TGCTTGAAGAGCTTCCCCTCCTCGACCAGCAGCCATGCATC < 41bp 0.532807160807937 0.787495939806175 0.38641226 0.80316794 prediction 0.509377557996475 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156712438 chr5:156712439 nonsynonymous SNV 0.940 3 22 hm5C_associated_SNPs_107430 0 0 1 0 2 Cytosol 0.500231643922086 0.500231643921092 0.60633588 0 hm5C_site_60575 DeepMRMD:0.60633588;iRNA_m5C:0 60576 chr10 50819545 50819545 1 + C A LUSC 50819541 + 50819521 50819561 41 CTTGGTGCTAGCTGCCGTGTCGCTCTTTGACGCGCTGTTGC CTTGGTGCTAGCTGCCGTGTCGCTATTTGACGCGCTGTTGC < 41bp 0.362140631005932 0.754677474435501 0.14914653 0.14127153 prediction 0.509354948871002 Functional Gain - SLC18A3 ENSG00000187714 CDS Human protein_coding chr10:50819541 chr10:50819545 synonymous SNV . 0 25 hm5C_associated_SNPs_107431 0 0 0 0 0 exosome 0.500283476508872 0.500231510884997 0 0 hm5C_site_60576 DeepMRMD:0;iRNA_m5C:0 60577 chr10 124380754 124380754 1 + C G LAML 124380753 + 124380733 124380773 41 CATGTCGGCCCCAGGAAATGCCCGGTTTGGCCAGGGCTCAG CATGTCGGCCCCAGGAAATGCGCGGTTTGGCCAGGGCTCAG < 41bp 0.46553068360532 0.754674726816714 0.11154553 0.43806016 prediction 0.509349453633427 Functional Gain - DMBT1 ENSG00000187908 CDS Human protein_coding chr10:124380753 chr10:124380754 synonymous SNV . 0 22 hm5C_associated_SNPs_107432 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60577 DeepMRMD:0;iRNA_m5C:0 60578 chr19 42222061 42222061 1 + C A SKCM 42222057 + 42222037 42222077 41 TTTGCTCCAGATGGCCCAGACGACCCCACCATTTCCCCCTC TTTGCTCCAGATGGCCCAGACGACACCACCATTTCCCCCTC < 41bp 0.340738057677579 0.754661122203696 0.03518024 0.058685154 prediction 0.509322244407393 Functional Gain - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42222057 chr19:42222061 nonsynonymous SNV 0.005 4 25 hm5C_associated_SNPs_107433 0 0 0 0 1 Cytosol 0.500231643907022 0.500231643923977 0 3.39104300195459e-11 hm5C_site_60578 DeepMRMD:0;iRNA_m5C:3.39104300195459e-11 60579 chr7 89854697 89854697 1 + C A UCEC 89854693 + 89854673 89854713 41 ATACACAGAGAACATTATACCTCCCTGTGGGACCTGAGACA ATACACAGAGAACATTATACCTCCATGTGGGACCTGAGACA < 41bp 0.323814707229942 0.754657544981084 0.059499145 0.9657254 prediction 0.509315089962167 Functional Gain - STEAP2 ENSG00000157214 CDS Human protein_coding chr7:89854693 chr7:89854697 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_107434 0 0 1 0 0 Nucleus 0.500231610721589 0.500303487503991 0.9314508 0.000143753564804561 hm5C_site_60579 DeepMRMD:0.9314508;iRNA_m5C:0.000143753564804561 60580 chr2 3660939 3660939 1 + C A rs148207876 3660935 + 3660915 3660955 41 AAGGGAGACAAAGGCGCCCCCGGACGGCCTGGAAGAGTCGG AAGGGAGACAAAGGCGCCCCCGGAAGGCCTGGAAGAGTCGG < 41bp 0.449519939474661 0.754652645381358 0.4330658 0.8446126 prediction 0.509305290762715 Functional Gain - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3660935 chr2:3660939 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_107435 0 0 0 0 2 membrane 0.500231643921093 0.500231643921092 0.6892252 0 hm5C_site_60580 DeepMRMD:0.6892252;iRNA_m5C:0 60581 chr11 109294862 109294862 1 + C A LIHC 109294858 + 109294838 109294878 41 GTCCCTGTGCTCCTCCGCCTCCACCGCCAGCCTCCAGTCCC GTCCCTGTGCTCCTCCGCCTCCACAGCCAGCCTCCAGTCCC < 41bp 0.355664540344643 0.754650963705951 0.09421125 0.17382267 prediction 0.509301927411902 Functional Gain - C11orf87 ENSG00000185742 CDS Human protein_coding chr11:109294858 chr11:109294862 nonsynonymous SNV 0.785 0 25 hm5C_associated_SNPs_107436 0 0 0 0 0 exosome 0.500231639692899 0.50023164315467 0 6.92354262810113e-09 hm5C_site_60581 DeepMRMD:0;iRNA_m5C:6.92354262810113e-09 60582 chr21 35247781 35247781 1 + C A STAD 35247777 + 35247757 35247797 41 CGGGAGAAGGAGAACTCTGACCGGCTGGAGTGGATCCAGGC CGGGAGAAGGAGAACTCTGACCGGATGGAGTGGATCCAGGC < 41bp 0.418010413271854 0.754646532830163 0.5461784 0.83766854 prediction 0.509293065660325 Functional Gain - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35247777 chr21:35247781 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_107437 0 0 0 0 1 Nucleus 0.500231643921574 0.500231643914332 0.58298028 0 hm5C_site_60582 DeepMRMD:0.58298028;iRNA_m5C:0 60583 chr17 78939517 78939517 1 + C G rs548067095 78939513 + 78939493 78939533 41 TCTTCTGGGTGGATGGAACCCTGCCTGGTCACATTTGGCCA TCTTCTGGGTGGATGGAACCCTGCGTGGTCACATTTGGCCA < 41bp 0.494415450556769 0.754641790016259 0.04274103 0.19666165 prediction 0.509283580032518 Functional Gain - RPTOR ENSG00000141564 UTR3 Human protein_coding chr17:78939513 chr17:78939517 . . 0 25 hm5C_associated_SNPs_107438 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_60583 DeepMRMD:0;iRNA_m5C:0 60584 chr3 193355797 193355797 1 + C G KIRC 193355796 + 193355776 193355816 41 TAGTGTGTTGGAAATGATTGCCCAAGCTCGAATATTCCCAA TAGTGTGTTGGAAATGATTGCGCAAGCTCGAATATTCCCAA < 41bp 0.458927972658608 0.754639134681976 0.15572083 0.21115103 prediction 0.509278269363952 Functional Gain - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193355796 chr3:193355797 synonymous SNV . 0 22 hm5C_associated_SNPs_107439 0 0 1 0 2 Nucleus 0.50023164698526 0.501051572033938 0 0.00163985009735512 hm5C_site_60584 DeepMRMD:0;iRNA_m5C:0.00163985009735512 60585 chr5 167835539 167835539 1 + C T rs17551608 167835538 + 167835518 167835558 41 GCCATGTTGAAGGACGGCTTCCGCACTGACAGGGGGTCTCA GCCATGTTGAAGGACGGCTTCTGCACTGACAGGGGGTCTCA < 41bp 0.492919168699857 0.754633720478223 0.4052502 0.560098 prediction 0.509267440956446 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167835538 chr5:167835539 nonsynonymous SNV 0.821 1 22 hm5C_associated_SNPs_107440 0 0 0 0 1 Ribosome 0.500232765829107 0.500255600398261 0.120196 4.56691383083907e-05 hm5C_site_60585 DeepMRMD:0.120196;iRNA_m5C:4.56691383083907e-05 60586 chr4 90816212 90816212 1 + T C STAD 90816210 + 90816190 90816230 41 GTAAGCATTCTTGGACTATACCTGAGGATGGGAACTCTCAG GTAAGCATTCTTGGACTATACCCGAGGATGGGAACTCTCAG < 41bp 0.500661806816529 0.755292967781897 0.33110008 0.6933841 prediction 0.509262321930735 Functional Gain - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90816210 chr4:90816212 synonymous SNV . 0 23 hm5C_associated_SNPs_107441 0 0 0 0 0 cytosol 0.500231643919074 0.500231643921092 0.3867682 4.03721500674692e-12 hm5C_site_60586 DeepMRMD:0.3867682;iRNA_m5C:4.03721500674692e-12 60587 chr3 11067249 11067249 1 + C T GBM 11067248 + 11067228 11067268 41 TTCTACATCACACCCAACTTCCGCAAGCTGTCTGACTCCGA TTCTACATCACACCCAACTTCTGCAAGCTGTCTGACTCCGA < 41bp 0.515571638799562 0.770192319265803 0.08517486 0.19559577 prediction 0.509241360932482 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11067248 chr3:11067249 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_107442 0 0 0 0 1 Endoplasmic reticulum 0.500231644690879 0.500231643922519 0 0 hm5C_site_60587 DeepMRMD:0;iRNA_m5C:0 60588 chr10 135488008 135488008 1 + T A rs546876664 135488004 + 135487984 135488024 41 GGATTTCGCCTACGCCGCCCCGGCTCCTCCGGACGGGGCGC GGATTTCGCCTACGCCGCCCCGGCACCTCCGGACGGGGCGC < 41bp 0.486847511663843 0.754619587781926 0.27029526 0.29422933 prediction 0.509239175563851 Functional Gain - FRG2B;NONE ENSG00000259139 ncRNA_exonic Human other chr10:135488004 chr10:135488008 . . 0 25 hm5C_associated_SNPs_107443 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_60588 DeepMRMD:0;iRNA_m5C:0 60589 chr3 39180226 39180226 1 + C T SKCM 39180225 + 39180205 39180245 41 CTCAGGGAGCACCCCGACTACCCCAAGATCAGGGAGGAAAT CTCAGGGAGCACCCCGACTACTCCAAGATCAGGGAGGAAAT < 41bp 0.486590378869955 0.754611312752891 0.121273845 0.94208616 prediction 0.509222625505782 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39180225 chr3:39180226 nonsynonymous SNV 0.993 3 22 hm5C_associated_SNPs_107444 0 0 0 0 1 nucleus 0.500231643921041 0.500231643922229 0.88417232 2.37632136190769e-12 hm5C_site_60589 DeepMRMD:0.88417232;iRNA_m5C:2.37632136190769e-12 60590 chr1 156145003 156145003 1 + C A THCA 156145002 + 156144982 156145022 41 TGTGCCTGGGACCCTGAGTCCCGAACCTGTTGCCTCCTGTC TGTGCCTGGGACCCTGAGTCCAGAACCTGTTGCCTCCTGTC < 41bp 0.506097500424091 0.760692771264784 0.14839777 0.26590556 prediction 0.509190541681386 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156145002 chr1:156145003 synonymous SNV . 0 22 hm5C_associated_SNPs_107445 0 0 0 0 1 exosome 0.500231643920317 0.500231643922248 0 3.86157772425122e-12 hm5C_site_60590 DeepMRMD:0;iRNA_m5C:3.86157772425122e-12 60591 chr6 88128009 88128009 1 + C A rs149134342 88128008 + 88127988 88128028 41 ACTGCCCGGAGCCAGGTATACCGCTACACAGCCATCCTTGA ACTGCCCGGAGCCAGGTATACAGCTACACAGCCATCCTTGA < 41bp 0.497029315231912 0.754583506072026 0.06425369 0.25473267 prediction 0.509167012144052 Functional Gain - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88128008 chr6:88128009 nonsynonymous SNV 0.253 0 22 hm5C_associated_SNPs_107446 0 0 0 0 1 Nucleus 0.500231643921096 0.500231643921092 0 0 hm5C_site_60591 DeepMRMD:0;iRNA_m5C:0 60592 chr19 54697191 54697191 1 + T A SKCM 54697187 + 54697167 54697207 41 CCTGATGGTAAGGTGGTCTACACCTCCCTGCAATGGGCCAG CCTGATGGTAAGGTGGTCTACACCACCCTGCAATGGGCCAG < 41bp 0.615532584004834 0.870115548354213 0.015846848 0.03671801 prediction 0.509165928698758 Functional Gain - TSEN34 ENSG00000170892 CDS Human protein_coding chr19:54697187 chr19:54697191 nonsynonymous SNV 0.998 3 25 hm5C_associated_SNPs_107447 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60592 DeepMRMD:0;iRNA_m5C:0 60593 chr17 76137754 76137754 1 + C G rs375098771 76137753 + 76137733 76137773 41 GGCCAGAGCTGGGATTTGAACCCAGGCACTCGGGCTCCAGA GGCCAGAGCTGGGATTTGAACGCAGGCACTCGGGCTCCAGA < 41bp 0.45591472981855 0.754576384058575 0.21250522 0.4639471 prediction 0.50915276811715 Functional Gain - TMC8 ENSG00000167895 UTR3 Human protein_coding chr17:76137753 chr17:76137754 . . 0 22 hm5C_associated_SNPs_107448 0 0 0 0 0 chromatin 0.500231643921092 0.500231644032473 0 2.2276047673131e-10 hm5C_site_60593 DeepMRMD:0;iRNA_m5C:2.2276047673131e-10 60594 chr11 105804547 105804547 1 + C G LUAD 105804546 + 105804526 105804566 41 GCTGAGGGAGTAGCTCGTGTCCGCAAATCCAAGGGCAAATT GCTGAGGGAGTAGCTCGTGTCGGCAAATCCAAGGGCAAATT < 41bp 0.583638289329948 0.838210925335881 0.20423102 0.8291497 prediction 0.509145272011866 Functional Gain - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804546 chr11:105804547 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107449 0 0 0 1 0 nucleoplasm 0.500231644164789 0.500231643928134 0.6582994 0 hm5C_site_60594 DeepMRMD:0.6582994;iRNA_m5C:0 60595 chr7 150773473 150773473 1 + C G rs569148643 150773472 + 150773452 150773492 41 TAGCCGCCACCGAGGGACAGCCGAGGGACCGATGGACGAGG TAGCCGCCACCGAGGGACAGCGGAGGGACCGATGGACGAGG < 41bp 0.447159204107021 0.754563910423295 0.72659534 0.8468629 prediction 0.50912782084659 Functional Gain - SLC4A2 ENSG00000244151 ncRNA_exonic Human antisense chr7:150773472 chr7:150773473 . . 0 22 hm5C_associated_SNPs_107450 0 0 1 0 1 Ribosome 0.500231654660882 0.500231643934461 0.24053512 0 hm5C_site_60595 DeepMRMD:0.24053512;iRNA_m5C:0 60596 chr6 10935330 10935330 1 + C A COAD 10935326 + 10935306 10935346 41 CCATCAGAGAAAGAAATACCCGAGCAAAATAACACCACATC CCATCAGAGAAAGAAATACCCGAGAAAAATAACACCACATC < 41bp 0.360405851221131 0.754563880979694 0.6372702 0.784762 prediction 0.509127761959389 Functional Gain - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10935326 chr6:10935330 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_107451 0 0 0 0 2 chromatin 0.500231643922809 0.500231643956933 0.2949836 6.82480738589675e-11 hm5C_site_60596 DeepMRMD:0.2949836;iRNA_m5C:6.82480738589675e-11 60597 chr1 235505468 235505468 1 + T C UCEC 235505466 + 235505446 235505486 41 GTCATCAATTCTGCCAATTACGTGTATTTCCTTGGCTTGGA GTCATCAATTCTGCCAATTACGCGTATTTCCTTGGCTTGGA < 41bp 0.524110335156342 0.778663220876807 0.274832 0.22871533 prediction 0.50910577144093 Functional Gain - GGPS1 ENSG00000152904 CDS Human protein_coding chr1:235505466 chr1:235505468 nonsynonymous SNV 0.571 1 23 hm5C_associated_SNPs_107452 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921094 0 2.66453525910038e-15 hm5C_site_60597 DeepMRMD:0;iRNA_m5C:2.66453525910038e-15 60598 chr2 159481558 159481558 1 + C T SKCM 159481557 + 159481537 159481577 41 ACCGACCCCCGACCTCTGAACCCCAGTGCATATTCCTCCAC ACCGACCCCCGACCTCTGAACTCCAGTGCATATTCCTCCAC < 41bp 0.538391947125879 0.792943973247648 0.2484084 0.9094682 prediction 0.509104052243539 Functional Gain - PKP4 ENSG00000144283 CDS Human protein_coding chr2:159481557 chr2:159481558 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107453 0 0 1 0 1 Cytosol 0.500231883406979 0.500231660034312 0.8189364 0 hm5C_site_60598 DeepMRMD:0.8189364;iRNA_m5C:0 60599 chr2 207834057 207834057 1 + T C UCEC 207834055 + 207834035 207834075 41 ATGGAGGCTGTGCTGTCAGTCCTGGATGATGTGTATGCGAA ATGGAGGCTGTGCTGTCAGTCCCGGATGATGTGTATGCGAA < 41bp 0.531088505977945 0.785631726935152 0.08607611 0.08684817 prediction 0.509086441914414 Functional Gain - CPO ENSG00000144410 CDS Human protein_coding chr2:207834055 chr2:207834057 nonsynonymous SNV 0.883 3 23 hm5C_associated_SNPs_107454 0 0 0 0 0 exosome 0.500231644357976 0.500231231895599 0 0 hm5C_site_60599 DeepMRMD:0;iRNA_m5C:0 60600 chr1 1469944 1469944 1 + C G rs537109895 1469943 + 1469923 1469963 41 ATCTTTCACACACTGGTGACCCTGAGAGAGGAGGGAGGAGG ATCTTTCACACACTGGTGACCGTGAGAGAGGAGGGAGGAGG < 41bp 0.500442265139356 0.754983639451783 0.18470576 0.32424426 prediction 0.509082748624852 Functional Gain - ATAD3A ENSG00000197785 UTR3 Human protein_coding chr1:1469943 chr1:1469944 . . 0 22 hm5C_associated_SNPs_107455 0 0 1 0 0 Ribosome 0.500231643921092 0.50023164392061 0 0 hm5C_site_60600 DeepMRMD:0;iRNA_m5C:0 60601 chr3 127379873 127379873 1 + C T SKCM 127379872 + 127379852 127379892 41 CTCTAGAACCTCAGCCTCTTCCCCACTGGCCCCTGGAGACA CTCTAGAACCTCAGCCTCTTCTCCACTGGCCCCTGGAGACA < 41bp 0.494971874353626 0.75454048613127 0.05683735 0.9565455 prediction 0.50908097226254 Functional Gain - PODXL2 ENSG00000114631 CDS Human protein_coding chr3:127379872 chr3:127379873 synonymous SNV . 0 22 hm5C_associated_SNPs_107456 0 0 1 0 0 chromatin 0.500231643921093 0.500231643921092 0.913091 0 hm5C_site_60601 DeepMRMD:0.913091;iRNA_m5C:0 60602 chr1 11204742 11204742 1 + C G BRCA 11204738 + 11204718 11204758 41 CACCAGATCTGGCGGATGATCTCTCGTCGCTCGGGGACAAG CACCAGATCTGGCGGATGATCTCTGGTCGCTCGGGGACAAG < 41bp 0.53807035624481 0.792608938045022 0.12659699 0.08302313 prediction 0.509077163600425 Functional Gain - MTOR ENSG00000198793 CDS Human protein_coding chr1:11204738 chr1:11204742 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_107457 0 0 0 0 1 Nucleus 0.500231643918477 0.500231643759271 0 0 hm5C_site_60602 DeepMRMD:0;iRNA_m5C:0 60603 chr18 22006963 22006963 1 + T G rs112940179 22006960 + 22006940 22006980 41 CGGCGGCTCCTCGGCGGCCGCGGTCTCGGCCTGTCTCGGAC CGGCGGCTCCTCGGCGGCCGCGGGCTCGGCCTGTCTCGGAC < 41bp 0.654363726148882 0.908898401985231 0.7838795 0.9130343 prediction 0.509069351672699 Functional Gain - IMPACT ENSG00000154059 intronic Human protein_coding chr18:22006960 chr18:22006963 . . 0 24 hm5C_associated_SNPs_107458 0 0 0 0 0 Ribosome 0.50023164382719 0.500231643921092 0.2583096 1.87803550488752e-10 hm5C_site_60603 DeepMRMD:0.2583096;iRNA_m5C:1.87803550488752e-10 60604 chr20 61296383 61296383 1 + C T SKCM 61296382 + 61296362 61296402 41 ACCGGCATGTCCACGTTCAGCCCCAAGTTCTTGGAGTCCCA ACCGGCATGTCCACGTTCAGCTCCAAGTTCTTGGAGTCCCA < 41bp 0.533241371593883 0.787774632098552 0.06948307 0.4368627 prediction 0.509066521009339 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61296382 chr20:61296383 nonsynonymous SNV 0.316 2 22 hm5C_associated_SNPs_107459 0 0 1 0 2 Endoplasmic reticulum 0.50023164541805 0.500231644174915 0 0 hm5C_site_60604 DeepMRMD:0;iRNA_m5C:0 60605 chr1 2433900 2433900 1 + C G rs12736998 2433899 + 2433879 2433919 41 GCCCTGTGCGAGTGCGGCCCCCGCGTGTCCTGGACGGCCCC GCCCTGTGCGAGTGCGGCCCCGGCGTGTCCTGGACGGCCCC < 41bp 0.593030312717376 0.847559588621025 0.3967944 0.80738956 prediction 0.509058551807297 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2433899 chr1:2433900 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_107460 0 0 0 0 0 nucleus 0.500231643921126 0.500231643924298 0.61477912 6.34492458573277e-12 hm5C_site_60605 DeepMRMD:0.61477912;iRNA_m5C:6.34492458573277e-12 60606 chr22 21403375 21403375 1 + C A rs28504593 21403371 + 21403351 21403391 41 AGGAGCAGGCGGCCCAGCACCTTGCCGAACTCCTGCTGGCC AGGAGCAGGCGGCCCAGCACCTTGACGAACTCCTGCTGGCC < 41bp 0.335167410974431 0.754517063195958 0.39460045 0.5348189 prediction 0.509034126391916 Functional Gain - LRRC74B ENSG00000187905 CDS Human protein_coding chr22:21403371 chr22:21403375 nonsynonymous SNV 0.070 1 25 hm5C_associated_SNPs_107461 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.0696378 0 hm5C_site_60606 DeepMRMD:0.0696378;iRNA_m5C:0 60607 chr1 170695491 170695491 1 + C A LUAD 170695487 + 170695467 170695507 41 TGGAGCAGCCCATCGTACCTCGTCCTGCTCCGAGACCCACC TGGAGCAGCCCATCGTACCTCGTCATGCTCCGAGACCCACC < 41bp 0.331023223187516 0.754514940855534 0.2226918 0.19002593 prediction 0.509029881711067 Functional Gain - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170695487 chr1:170695491 nonsynonymous SNV 0.996 5 25 hm5C_associated_SNPs_107462 0 0 0 0 1 Cytoplasm 0.500232011968854 0.500231644526205 0 0 hm5C_site_60607 DeepMRMD:0;iRNA_m5C:0 60608 chr15 96876611 96876611 1 + T A rs7173047 96876607 + 96876587 96876627 41 AGCCTGGGCCCGAGCCTCGCCGGCTTTCCCCGGCCCTTACA AGCCTGGGCCCGAGCCTCGCCGGCATTCCCCGGCCCTTACA < 41bp 0.465070564851144 0.754514768769066 0.5214586 0.7650548 prediction 0.509029537538132 Functional Gain - NR2F2 ENSG00000185551 UTR5 Human protein_coding chr15:96876607 chr15:96876611 . . 0 25 hm5C_associated_SNPs_107463 0 0 0 0 0 Cytoplasm 0.500231643921092 0.500231643921092 0.4871924 0 hm5C_site_60608 DeepMRMD:0.4871924;iRNA_m5C:0 60609 chr2 233396344 233396344 1 + T A LUSC 233396340 + 233396320 233396360 41 ACTTCCGAACACCCAGCACCCATGTGCTGTCTGAGGGGGTC ACTTCCGAACACCCAGCACCCATGAGCTGTCTGAGGGGGTC < 41bp 0.444378059279342 0.754510610407004 0.1475066 0.17570469 prediction 0.509021220814007 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233396340 chr2:233396344 nonsynonymous SNV 0.992 3 25 hm5C_associated_SNPs_107464 0 0 0 0 1 unknown 0.500231643921134 0.500231643921093 0 0 hm5C_site_60609 DeepMRMD:0;iRNA_m5C:0 60610 chr6 3154871 3154871 1 + A C rs17849443 3154874 - 3154854 3154894 41 GAGCCCTACAACGCCACCCTCTCTGTCCACCAGCTGGTGGA GAGCCCTACAACGCCACCCTCTCGGTCCACCAGCTGGTGGA < 41bp 0.362485186732801 0.754506321724981 0.04330027 0.260579 prediction 0.509012643449962 Functional Gain - TUBB2A ENSG00000137267 CDS Human protein_coding chr6:3154874 chr6:3154871 synonymous SNV . 0 24 hm5C_associated_SNPs_107465 1 0 0 0 0 Ribosome 0.500231643921072 0.500231643921092 0 3.99680288865056e-14 hm5C_site_60610 DeepMRMD:0;iRNA_m5C:3.99680288865056e-14 not specified not specified 60611 chr14 21460308 21460308 1 + T G UCEC 21460306 + 21460286 21460326 41 TATCTCAGACAGAGGAGAAACTTCGTGGAGCAGTGCTACAC TATCTCAGACAGAGGAGAAACTGCGTGGAGCAGTGCTACAC < 41bp 0.612210571443304 0.866716888201167 0.17013392 0.26307496 prediction 0.509012633515726 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21460306 chr14:21460308 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_107466 0 0 1 0 3 Ribosome 0.500242455309882 0.50023165411745 0 0 hm5C_site_60611 DeepMRMD:0;iRNA_m5C:0 60612 chr19 16952676 16952676 1 + T C UCEC 16952674 + 16952654 16952694 41 GTGCCCCTGGAGTCCGATTCCGTGGAATTCAACAACGCCAT GTGCCCCTGGAGTCCGATTCCGCGGAATTCAACAACGCCAT < 41bp 0.5396096172062 0.794115224475749 0.3413056 0.39389393 prediction 0.509011214539098 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16952674 chr19:16952676 nonsynonymous SNV 0.832 2 23 hm5C_associated_SNPs_107467 0 0 1 0 1 Cytosol 0.500231643921241 0.500231643921092 0 0 hm5C_site_60612 DeepMRMD:0;iRNA_m5C:0 60613 chr3 186442900 186442900 1 + C A BLCA 186442899 + 186442879 186442919 41 GAGGGCCCTGTGGTGACAGCCCAGTACGACTGCCTCGGCTG GAGGGCCCTGTGGTGACAGCCAAGTACGACTGCCTCGGCTG < 41bp 0.505524143849051 0.760026891054707 0.28731182 0.90489554 prediction 0.509005494411313 Functional Gain - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186442899 chr3:186442900 nonsynonymous SNV 0.215 0 22 hm5C_associated_SNPs_107468 0 0 0 0 1 Cytosol 0.500231643184733 0.500231643919968 0.80979108 1.47046996801237e-09 hm5C_site_60613 DeepMRMD:0.80979108;iRNA_m5C:1.47046996801237e-09 60614 chr1 43353379 43353379 1 + C G rs368677256 43353375 + 43353355 43353395 41 GCATGGCCGCCTGCCGCAGCCTCCCGCACACGCTCCTGGGG GCATGGCCGCCTGCCGCAGCCTCCGGCACACGCTCCTGGGG < 41bp 0.520733029699301 0.775231426845411 0.17600048 0.37496394 prediction 0.50899679429222 Functional Gain - LOC339539 ENSG00000233708 ncRNA_exonic Human processed_pseudogene chr1:43353375 chr1:43353379 . . 0 25 hm5C_associated_SNPs_107469 0 0 0 0 0 unknown 0.500231643921092 0.500231643849124 0 0 hm5C_site_60614 DeepMRMD:0;iRNA_m5C:0 60615 chr9 139642918 139642918 1 + C A UCEC 139642914 + 139642894 139642934 41 CGAGACCAAAGCCAGAAAAGCAGCCAGCAGCAGGCCGCCCA CGAGACCAAAGCCAGAAAAGCAGCAAGCAGCAGGCCGCCCA < 41bp 0.655929702844471 0.910423230470264 0.71603143 0.6379045 prediction 0.508987055251585 Functional Gain - LCN6 ENSG00000267206 CDS Human protein_coding chr9:139642914 chr9:139642918 synonymous SNV . 0 25 hm5C_associated_SNPs_107470 0 0 0 0 0 exosome 0.500231643645195 0.500231746187349 0 2.05084308424475e-07 hm5C_site_60615 DeepMRMD:0;iRNA_m5C:2.05084308424475e-07 60616 chr19 40276455 40276455 1 + T C LIHC 40276453 + 40276433 40276473 41 AGTGAAGAAGGAGGAGACTCCCTCAGCCATAACTACTGCAA AGTGAAGAAGGAGGAGACTCCCCCAGCCATAACTACTGCAA < 41bp 0.493165313196309 0.754490393731857 0.011620969 0.03411892 prediction 0.508980787463714 Functional Gain - LEUTX ENSG00000213921 CDS Human protein_coding chr19:40276453 chr19:40276455 nonsynonymous SNV 0.000 2 23 hm5C_associated_SNPs_107471 0 0 0 0 0 unknown 0.500231610352122 0.50023164428801 0 6.78717766433579e-08 hm5C_site_60616 DeepMRMD:0;iRNA_m5C:6.78717766433579e-08 60617 chr6 108616295 108616295 1 + C G LUAD 108616294 + 108616274 108616314 41 GGAGTTCAAGATGGCGGCCTCCTGGTCGCTCTTGGTTACCC GGAGTTCAAGATGGCGGCCTCGTGGTCGCTCTTGGTTACCC < 41bp 0.448147151501697 0.754478798316962 0.2730151 0.79129285 prediction 0.508957596633924 Functional Gain - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108616294 chr6:108616295 synonymous SNV . 0 22 hm5C_associated_SNPs_107472 0 0 1 0 0 unknown 0.500231643921092 0.500231644027854 0.5825857 2.13524087300243e-10 hm5C_site_60617 DeepMRMD:0.5825857;iRNA_m5C:2.13524087300243e-10 60618 chr17 78011930 78011930 1 + C A LGG 78011929 + 78011909 78011949 41 TCTCTAAAACCAGGTCCCATCCGGAAGATGGATCGGCTTCT TCTCTAAAACCAGGTCCCATCAGGAAGATGGATCGGCTTCT < 41bp 0.504748264713215 0.759225154166579 0.885273 0.90676093 prediction 0.50895377890673 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78011929 chr17:78011930 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_107473 0 0 0 0 2 exosome 0.500231642321345 0.500231643921092 0.0429758600000001 3.19949400306996e-09 hm5C_site_60618 DeepMRMD:0.0429758600000001;iRNA_m5C:3.19949400306996e-09 60619 chrX 101971015 101971015 1 + C G HNSC 101971011 + 101970991 101971031 41 TTTGGAGGGTGGAGCTTCAGCAATCTGTGAATCTGAGCCAG TTTGGAGGGTGGAGCTTCAGCAATGTGTGAATCTGAGCCAG < 41bp 0.449893214204704 0.754476621276976 0.21669748 0.43860674 prediction 0.508953242553952 Functional Gain - ARMCX5-GPRASP2;GPRASP2 ENSG00000158301 CDS Human protein_coding chrX:101971011 chrX:101971015 nonsynonymous SNV 0.989 0 25 hm5C_associated_SNPs_107474 0 0 1 0 0 unknown 0.50023164474191 0.500231643921118 0 0 hm5C_site_60619 DeepMRMD:0;iRNA_m5C:0 60620 chr17 7984215 7984215 1 + G C rs143010639 7984219 - 7984199 7984239 41 CCTCCGGTGCGGAGGCATCGCAACCCCAACCGGCCTGAGTA CCTCCGGTGCGGAGGCATCGCAACGCCAACCGGCCTGAGTA < 41bp 0.457858978541323 0.754476251774067 0.50149864 0.546655 prediction 0.508952503548133 Functional Gain - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7984219 chr17:7984215 nonsynonymous SNV 0.447 2 25 hm5C_associated_SNPs_107475 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.09031272 0 hm5C_site_60620 DeepMRMD:0.09031272;iRNA_m5C:0 60621 chr1 149871871 149871871 1 + C G rs113958238 149871870 + 149871850 149871890 41 CTGAGCCCCCTACAACGACACCGGCTGGTCCACGCAGCGCT CTGAGCCCCCTACAACGACACGGGCTGGTCCACGCAGCGCT < 41bp 0.434933222830535 0.754475483163197 0.23040512 0.8769326 prediction 0.508950966326393 Functional Gain - BOLA1 ENSG00000178096 CDS Human protein_coding chr1:149871870 chr1:149871871 nonsynonymous SNV 0.823 4 22 hm5C_associated_SNPs_107476 0 0 0 0 0 Ribosome 0.500231643921393 0.500231643921067 0.7538652 0 hm5C_site_60621 DeepMRMD:0.7538652;iRNA_m5C:0 60622 chr11 55110736 55110736 1 + T A BLCA 55110732 + 55110712 55110752 41 CCTGGGCCTCACTCAAGATCCTGATGTGAAAAAAACATTAT CCTGGGCCTCACTCAAGATCCTGAAGTGAAAAAAACATTAT < 41bp 0.567281983088102 0.821755162529435 0.067255944 0.067864716 prediction 0.508946358882665 Functional Gain - OR4A16 ENSG00000181961 CDS Human protein_coding chr11:55110732 chr11:55110736 nonsynonymous SNV 0.096 0 25 hm5C_associated_SNPs_107477 0 0 0 0 0 unknown 0.500231644482775 0.500231643901536 0 0 hm5C_site_60622 DeepMRMD:0;iRNA_m5C:0 60623 chr16 29706325 29706325 1 + C G BRCA 29706321 + 29706301 29706341 41 CTGCAGTGGCATTGCCAGTGCTGCCGCCGCTGCAGTGGAGG CTGCAGTGGCATTGCCAGTGCTGCGGCCGCTGCAGTGGAGG < 41bp 0.554758797787393 0.809227771005925 0.21426606 0.31616887 prediction 0.508937946437063 Functional Gain - QPRT ENSG00000103485 CDS Human protein_coding chr16:29706321 chr16:29706325 synonymous SNV . 0 25 hm5C_associated_SNPs_107478 0 0 1 0 0 Endoplasmic reticulum 0.50023164392109 0.500231643921038 0 0 hm5C_site_60623 DeepMRMD:0;iRNA_m5C:0 60624 chr1 84543879 84543879 1 + T A rs112683800 84543875 + 84543855 84543895 41 GCCCGGTCTTCGCGCCCGGACTCCTGGCGCCAGCGCTAGGC GCCCGGTCTTCGCGCCCGGACTCCAGGCGCCAGCGCTAGGC < 41bp 0.488085782151354 0.754468066706899 0.2535096 0.93546265 prediction 0.508936133413798 Functional Gain - PRKACB ENSG00000142875 UTR5 Human protein_coding chr1:84543875 chr1:84543879 . . 0 25 hm5C_associated_SNPs_107479 0 0 1 0 0 cytosol 0.500231643921094 0.500231643921197 0.8709253 2.07389660999979e-13 hm5C_site_60624 DeepMRMD:0.8709253;iRNA_m5C:2.07389660999979e-13 60625 chr6 36927113 36927113 1 + C A rs144353254 36927109 + 36927089 36927129 41 AACCTCAGCGCCGCCACCTGCAGCCCAGGCCAGATGTGCGG AACCTCAGCGCCGCCACCTGCAGCACAGGCCAGATGTGCGG < 41bp 0.352710175239783 0.754461126460249 0.41321546 0.4781322 prediction 0.508922252920498 Functional Gain - PI16 ENSG00000164530 CDS Human protein_coding chr6:36927109 chr6:36927113 nonsynonymous SNV 0.150 1 25 hm5C_associated_SNPs_107480 0 0 0 0 1 exosome 0.500231643921092 0.500231643781901 0 0 hm5C_site_60625 DeepMRMD:0;iRNA_m5C:0 60626 chr20 42965841 42965841 1 + T G rs11699901 42965839 + 42965819 42965859 41 GTGGGCCTGGCAGGCCTGCTCTTCTGGGCTGGCCAGGCAGT GTGGGCCTGGCAGGCCTGCTCTGCTGGGCTGGCCAGGCAGT < 41bp 0.41409894059314 0.754460552585298 0.19934809 0.26395875 prediction 0.508921105170597 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42965839 chr20:42965841 nonsynonymous SNV 0.526 0 23 hm5C_associated_SNPs_107481 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921099 0 1.31006316905768e-14 hm5C_site_60626 DeepMRMD:0;iRNA_m5C:1.31006316905768e-14 60627 chr17 31322548 31322548 1 + C G UCEC 31322544 + 31322524 31322564 41 TGGTGGCTCCACCTCTGCCGCCGGCATAGAAGCCAGGAGCA TGGTGGCTCCACCTCTGCCGCCGGGATAGAAGCCAGGAGCA < 41bp 0.449876299430327 0.754459816071801 0.69901514 0.87846047 prediction 0.508919632143602 Functional Gain - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31322544 chr17:31322548 synonymous SNV . 0 25 hm5C_associated_SNPs_107482 0 0 0 0 0 unknown 0.500231644520869 0.500231644181577 0.35889066 0 hm5C_site_60627 DeepMRMD:0.35889066;iRNA_m5C:0 60628 chrX 100240811 100240811 1 + C A UCEC 100240810 + 100240790 100240830 41 GCCCATGGGCTTGTTTTCGTCCTGGATTCCAGTGACATAAG GCCCATGGGCTTGTTTTCGTCATGGATTCCAGTGACATAAG < 41bp 0.500916093873937 0.755365462251299 0.2056736 0.4003467 prediction 0.508898736754724 Functional Gain - ARL13A ENSG00000174225 CDS Human protein_coding chrX:100240810 chrX:100240811 nonsynonymous SNV 0.967 3 22 hm5C_associated_SNPs_107483 0 0 0 0 1 unknown 0.500231643921092 0.500231643920421 0 0 hm5C_site_60628 DeepMRMD:0;iRNA_m5C:0 60629 chr19 9296619 9296619 1 + C A ESCA 9296615 + 9296595 9296635 41 CCTGGCCATCAGCTCTGACTCCCACCTCCACACCCCCATGT CCTGGCCATCAGCTCTGACTCCCAACTCCACACCCCCATGT < 41bp 0.357250852190594 0.754443294698503 0.0059254467 0.014041275 prediction 0.508886589397006 Functional Gain - OR7D2 ENSG00000188000 CDS Human protein_coding chr19:9296615 chr19:9296619 nonsynonymous SNV 0.248 1 25 hm5C_associated_SNPs_107484 0 0 0 0 0 Nucleus 0.500231466332955 0.500231643704851 0 3.54743792119194e-07 hm5C_site_60629 DeepMRMD:0;iRNA_m5C:3.54743792119194e-07 60630 chr5 140475832 140475832 1 + C G BLCA 140475831 + 140475811 140475851 41 CAGAGACTCGGGCACCAACGCCCAGGTCACCTACTCGCTGC CAGAGACTCGGGCACCAACGCGCAGGTCACCTACTCGCTGC < 41bp 0.592582686966935 0.847019382575524 0.22815028 0.6529202 prediction 0.508873391217178 Functional Gain - PCDHB2 ENSG00000112852 CDS Human protein_coding chr5:140475831 chr5:140475832 synonymous SNV . 0 22 hm5C_associated_SNPs_107485 0 0 0 0 0 exosome 0.500231643921308 0.500231643934314 0.3058404 2.60114152439428e-11 hm5C_site_60630 DeepMRMD:0.3058404;iRNA_m5C:2.60114152439428e-11 60631 chr1 111824376 111824376 1 + T A LUAD 111824372 + 111824352 111824392 41 GCTTTCAATGGCCTGAAAAACAAGTAAATGACGGAAAACCT GCTTTCAATGGCCTGAAAAACAAGAAAATGACGGAAAACCT < 41bp 0.49405169759198 0.754412252276326 0.63650566 0.4288237 prediction 0.508824504552652 Functional Gain - CHIAP2 ENSG00000203878;ENSG00000203878 ncRNA_exonic;splicing Human other chr1:111824372 chr1:111824376 . . 0 25 hm5C_associated_SNPs_107486 0 0 0 0 0 unknown 0.500231643866728 0.500231643880325 0 2.71933586759587e-11 hm5C_site_60631 DeepMRMD:0;iRNA_m5C:2.71933586759587e-11 60632 chr15 48063473 48063473 1 + C G LUAD 48063472 + 48063452 48063492 41 GGAGACATCCAGATGGCACACCAGAACTTAATGCTGGATCC GGAGACATCCAGATGGCACACGAGAACTTAATGCTGGATCC < 41bp 0.471325120698244 0.754411634267587 0.14008734 0.3965454 prediction 0.508823268535174 Functional Gain - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48063472 chr15:48063473 nonsynonymous SNV 0.972 3 22 hm5C_associated_SNPs_107487 0 0 0 1 0 Cytosol 0.500231643938093 0.500231643921311 0 0 hm5C_site_60632 DeepMRMD:0;iRNA_m5C:0 60633 chr12 65564510 65564510 1 + C A UCEC 65564506 + 65564486 65564526 41 GCCACTTACTGACATGGACTCAACCTTGGATTCGTCAACAG GCCACTTACTGACATGGACTCAACATTGGATTCGTCAACAG < 41bp 0.350850108416078 0.754401845310393 0.023276448 0.06450102 prediction 0.508803690620786 Functional Gain - LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65564506 chr12:65564510 synonymous SNV . 0 25 hm5C_associated_SNPs_107488 0 0 1 0 0 Endoplasmic reticulum 0.500231644339212 0.500231646194691 0 3.71095776330321e-09 hm5C_site_60633 DeepMRMD:0;iRNA_m5C:3.71095776330321e-09 60634 chr2 241812546 241812546 1 + C A rs114721034 241812542 + 241812522 241812562 41 GCAGGAAGCCCTGCTGGAAGCGTGCGTCCAGCAGCCGATGC GCAGGAAGCCCTGCTGGAAGCGTGAGTCCAGCAGCCGATGC < 41bp 0.413233029118264 0.754392199279425 0.344981 0.46680075 prediction 0.50878439855885 Functional Gain - AGXT ENSG00000172482 intronic Human protein_coding chr2:241812542 chr2:241812546 . . 0 25 hm5C_associated_SNPs_107489 0 0 0 0 0 Cytosol 0.500231625426524 0.500231491750732 0 0 hm5C_site_60634 DeepMRMD:0;iRNA_m5C:0 Endometriosis 60635 chr17 43227163 43227163 1 + C G rs146567854 43227159 + 43227139 43227179 41 CGCCAAGGGCCAGCCGGTCGCGCCCTATAACACCACGCAGT CGCCAAGGGCCAGCCGGTCGCGCCGTATAACACCACGCAGT < 41bp 0.550335211579022 0.804724263093086 0.14629826 0.29048705 prediction 0.508778103028127 Functional Gain - HEXIM1 ENSG00000186834 CDS Human protein_coding chr17:43227159 chr17:43227163 synonymous SNV . 0 25 hm5C_associated_SNPs_107490 0 0 1 0 0 Ribosome 0.500231643921223 0.500231643920242 0 0 hm5C_site_60635 DeepMRMD:0;iRNA_m5C:0 60636 chr19 1393357 1393357 1 + G T THYM 1393361 - 1393341 1393381 41 GGCGCTGGCCCTGTCTCCAGCTCCCTCGTGGGCGGTGCGGT GGCGCTGGCCCTGTCTCCAGCTCCATCGTGGGCGGTGCGGT < 41bp 0.358592414848829 0.754376054352625 0.067569554 0.7640929 prediction 0.50875210870525 Functional Gain - NDUFS7 ENSG00000115286 CDS Human protein_coding chr19:1393361 chr19:1393357 nonsynonymous SNV 0.003 1 25 hm5C_associated_SNPs_107491 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921012 0.5281858 0 hm5C_site_60636 DeepMRMD:0.5281858;iRNA_m5C:0 60637 chr20 13107341 13107341 1 + T C STAD 13107339 + 13107319 13107359 41 ATCAGATCACTAAAACTTATCATGGGACTGGATGGGACCAC ATCAGATCACTAAAACTTATCACGGGACTGGATGGGACCAC < 41bp 0.484307988265523 0.754367319246636 0.89644176 0.87889826 prediction 0.508734638493273 Functional Gain - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13107339 chr20:13107341 nonsynonymous SNV 0.915 2 23 hm5C_associated_SNPs_107492 0 0 1 0 1 cytosol 0.500231643926087 0.500231643921188 0 0 hm5C_site_60637 DeepMRMD:0;iRNA_m5C:0 60638 chr2 219757616 219757616 1 + C G rs563548971 219757615 + 219757595 219757635 41 GTGGGGGCGCTGCTGCGCAGCCGCTTCCACCGCGCCACGCT GTGGGGGCGCTGCTGCGCAGCGGCTTCCACCGCGCCACGCT < 41bp 0.443928899598407 0.754365241585795 0.08330929 0.62081677 prediction 0.50873048317159 Functional Gain - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219757615 chr2:219757616 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_107493 0 0 0 0 0 exosome 0.500231643920963 0.500231643917703 0.24163354 0 hm5C_site_60638 DeepMRMD:0.24163354;iRNA_m5C:0 60639 chr7 27227864 27227864 1 + C G rs539335959 27227863 + 27227843 27227883 41 TGCCCGGAGGGACTTGCCGCCCGGAAGGGGGTGTGTGGGGG TGCCCGGAGGGACTTGCCGCCGGGAAGGGGGTGTGTGGGGG < 41bp 0.573759426955346 0.828122158038363 0.15813583 0.8874087 prediction 0.508725462166033 Functional Gain - HOXA11-AS ENSG00000240990;ENSG00000253508 ncRNA_intronic Human other chr7:27227863 chr7:27227864 . . 0 22 hm5C_associated_SNPs_107494 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.7748174 0 hm5C_site_60639 DeepMRMD:0.7748174;iRNA_m5C:0 60640 chr11 73964702 73964702 1 + C G rs80199049 73964698 + 73964678 73964718 41 ACGGGCACCCCGAGATGTACCAACCTTTTCATGTATTCTGC ACGGGCACCCCGAGATGTACCAACGTTTTCATGTATTCTGC < 41bp 0.452623196363315 0.754358478170641 0.22959438 0.59555924 prediction 0.508716956341282 Functional Gain - PPME1 ENSG00000214517 UTR3 Human protein_coding chr11:73964698 chr11:73964702 . . 0 25 hm5C_associated_SNPs_107495 0 0 1 3 0 Ribosome 0.500231643739562 0.500231534061778 0.19111848 0 hm5C_site_60640 DeepMRMD:0.19111848;iRNA_m5C:0 60641 chr1 11718605 11718605 1 + C A PAAD 11718604 + 11718584 11718624 41 CCCCAGCACCTGCCTCAAGTCCCAGGTGGTGGACCTCAAGG CCCCAGCACCTGCCTCAAGTCACAGGTGGTGGACCTCAAGG < 41bp 0.503388883587851 0.757740628215199 0.19430804 0.41762435 prediction 0.508703489254694 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718604 chr1:11718605 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107496 0 0 1 2 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_60641 DeepMRMD:0;iRNA_m5C:0 60642 chr4 75973602 75973602 1 + C G rs140145727 75973601 + 75973581 75973621 41 AAAAAAAGGGCAGCAAATGACCAAGGGCGCCCCTTCTGGCC AAAAAAAGGGCAGCAAATGACGAAGGGCGCCCCTTCTGGCC < 41bp 0.556987401521657 0.811335061530496 0.22542357 0.8152715 prediction 0.508695320017679 Functional Gain - PARM1 ENSG00000169116 UTR3 Human protein_coding chr4:75973601 chr4:75973602 . . 0 22 hm5C_associated_SNPs_107497 0 0 1 0 0 exosome 0.500231643921092 0.500231643921093 0.630543 4.44089209850063e-16 hm5C_site_60642 DeepMRMD:0.630543;iRNA_m5C:4.44089209850063e-16 60643 chr2 27521526 27521526 1 + T C COAD 27521524 + 27521504 27521544 41 TCGTGCAGGCATGAGGTTGTCCTGGACAGACACGGTGTCTA TCGTGCAGGCATGAGGTTGTCCCGGACAGACACGGTGTCTA < 41bp 0.532690965560853 0.787036386737142 0.2610312 0.2962222 prediction 0.508690842352578 Functional Gain - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27521524 chr2:27521526 nonsynonymous SNV 0.931 4 23 hm5C_associated_SNPs_107498 0 0 0 0 2 Nucleus 0.500231643921093 0.500231643921093 0 2.22044604925031e-16 hm5C_site_60643 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 60644 chr9 137779081 137779081 1 + C G rs144393630 137779080 + 137779060 137779100 41 CCAGGACAATGATCTTAACACCGGAAATTGTGCTGTGATGT CCAGGACAATGATCTTAACACGGGAAATTGTGCTGTGATGT < 41bp 0.601405594857615 0.855745950388127 0.30030882 0.878979 prediction 0.508680711061024 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137779080 chr9:137779081 synonymous SNV . 0 22 hm5C_associated_SNPs_107499 0 0 0 0 1 exosome 0.500192698520763 0.500231643888252 0.757958 7.78907349783253e-05 hm5C_site_60644 DeepMRMD:0.757958;iRNA_m5C:7.78907349783253e-05 60645 chr15 43477481 43477481 1 + C G rs552195161 43477480 + 43477460 43477500 41 CGGGAGGAGGCGGGGCCAGGCCTGGTCTCTGATAACGGGAT CGGGAGGAGGCGGGGCCAGGCGTGGTCTCTGATAACGGGAT < 41bp 0.572170964360244 0.82647524752605 0.2964602 0.53766024 prediction 0.508608566331613 Functional Gain - CCNDBP1 ENSG00000166946 UTR5 Human protein_coding chr15:43477480 chr15:43477481 . . 0 22 hm5C_associated_SNPs_107500 0 0 0 1 0 Cytosol 0.500231636616691 0.500227871557028 0.07532048 0 hm5C_site_60645 DeepMRMD:0.07532048;iRNA_m5C:0 60646 chr1 238090465 238090465 1 + C A LUAD 238090464 + 238090444 238090484 41 GATCGAGGCCTGCCCGAACCCCAAGGCCAACAGAGAGAAGA GATCGAGGCCTGCCCGAACCCAAAGGCCAACAGAGAGAAGA < 41bp 0.504909157786349 0.759208890270159 0.2586932 0.43098634 prediction 0.50859946496762 Functional Gain - LOC100130331 ENSG00000237250;ENSG00000243781 ncRNA_exonic Human other chr1:238090464 chr1:238090465 . . 0 22 hm5C_associated_SNPs_107501 0 0 1 0 0 unknown 0.500231643921093 0.500231643921092 0 0 hm5C_site_60646 DeepMRMD:0;iRNA_m5C:0 60647 chr20 55841957 55841957 1 + C A rs78808049 55841953 + 55841933 55841973 41 CCCTCTCGGCACTCGCGGTCCGGACCAGGAAGGCGGCCCGA CCCTCTCGGCACTCGCGGTCCGGAACAGGAAGGCGGCCCGA < 41bp 0.626231475129345 0.88052614353795 0.39509156 0.8663369 prediction 0.508589336817209 Functional Gain - BMP7 ENSG00000226308 ncRNA_exonic Human lincRNA chr20:55841953 chr20:55841957 . . 0 25 hm5C_associated_SNPs_107502 0 0 0 0 0 Ribosome 0.50023162586214 0.500231643921084 0.7326738 3.61178886798541e-08 hm5C_site_60647 DeepMRMD:0.7326738;iRNA_m5C:3.61178886798541e-08 60648 chr22 45929715 45929715 1 + C T COAD 45929714 + 45929694 45929734 41 ATCAACACAGTGGGCTCTTTCCGCTGCCAGCGGGACAGCAG ATCAACACAGTGGGCTCTTTCTGCTGCCAGCGGGACAGCAG < 41bp 0.513710109665114 0.768004435617586 0.51321006 0.2744525 prediction 0.508588651904945 Functional Gain - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45929714 chr22:45929715 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_107503 0 0 1 0 2 cytosol 0.500231642385073 0.500231667766677 0 5.07632078594611e-08 hm5C_site_60648 DeepMRMD:0;iRNA_m5C:5.07632078594611e-08 60649 chr12 110024578 110024578 1 + T C BLCA 110024576 + 110024556 110024596 41 TAGGAGGAGCCCTCCGATACCATCAAGGGAAGATTTCATCC TAGGAGGAGCCCTCCGATACCACCAAGGGAAGATTTCATCC < 41bp 0.560612566309925 0.814905922759598 0.109994054 0.23332375 prediction 0.508586712899348 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110024576 chr12:110024578 synonymous SNV . 0 23 hm5C_associated_SNPs_107504 0 0 1 1 2 Ribosome 0.500231643921029 0.500231643921091 0 1.25011112572793e-13 hm5C_site_60649 DeepMRMD:0;iRNA_m5C:1.25011112572793e-13 60650 chr9 100395904 100395904 1 + G C rs544887973 100395905 - 100395885 100395925 41 CCTCGGGCTGCCTCCGCCTGCCGGCTACTTCTTTCTCCCGC CCTCGGGCTGCCTCCGCCTGCGGGCTACTTCTTTCTCCCGC < 41bp 0.56968981319558 0.823982791750784 0.62540674 0.92642945 prediction 0.508585957110409 Functional Gain - NCBP1;TSTD2 ENSG00000136925 UTR5 Human protein_coding chr9:100395905 chr9:100395904 . . 0 22 hm5C_associated_SNPs_107505 0 0 0 0 0 unknown 0.500231643965695 0.500231643923446 0.60204542 0 hm5C_site_60650 DeepMRMD:0.60204542;iRNA_m5C:0 60651 chr17 35299637 35299637 1 + C A rs199823149 35299636 + 35299616 35299656 41 GGAGCCGGGCGAGCTCATCCCCAATGGTCCCTTCTCCTTCT GGAGCCGGGCGAGCTCATCCCAAATGGTCCCTTCTCCTTCT < 41bp 0.499201020356745 0.754288118960912 0.31643575 0.8122637 prediction 0.508576237921824 Functional Gain - LHX1 ENSG00000132130 CDS Human other chr17:35299636 chr17:35299637 synonymous SNV . 0 22 hm5C_associated_SNPs_107506 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0.6245274 0 hm5C_site_60651 DeepMRMD:0.6245274;iRNA_m5C:0 60652 chr19 19212614 19212614 1 + T A STAD 19212610 + 19212590 19212630 41 CGTGACCACAGGCAAGTGCTCAGCTCCCTGCTGTCTGGGGC CGTGACCACAGGCAAGTGCTCAGCACCCTGCTGTCTGGGGC < 41bp 0.4259610562774 0.754284188968048 0.68058044 0.49508122 prediction 0.508568377936095 Functional Gain - SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19212610 chr19:19212614 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_107507 0 0 1 0 1 Endoplasmic reticulum 0.500231643839124 0.500231643858321 0 3.83943987714019e-11 hm5C_site_60652 DeepMRMD:0;iRNA_m5C:3.83943987714019e-11 60653 chr6 26045939 26045939 1 + C G rs9461231 26045935 + 26045915 26045955 41 CTGCAGGAGGCTTGTGAGGCCTACCTGGTGGGACTCTTCGA CTGCAGGAGGCTTGTGAGGCCTACGTGGTGGGACTCTTCGA < 41bp 0.502475998458594 0.756748188648548 0.06132555 0.09403244 prediction 0.508544380379908 Functional Gain - HIST1H3C ENSG00000196532 CDS Human other chr6:26045935 chr6:26045939 nonsynonymous SNV 0.919 0 25 hm5C_associated_SNPs_107508 0 0 0 0 0 exosome 0.500231644062442 0.500231648006241 0 7.88759768610703e-09 hm5C_site_60653 DeepMRMD:0;iRNA_m5C:7.88759768610703e-09 60654 chr1 203025967 203025967 1 + C A CESC 203025963 + 203025943 203025983 41 AGCAGCAACAGCAGCCAGGACTCCCTGCACAAGGGCGCCAA AGCAGCAACAGCAGCCAGGACTCCATGCACAAGGGCGCCAA < 41bp 0.313931026517176 0.7542589640688 0.27493724 0.9387175 prediction 0.508517928137599 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203025963 chr1:203025967 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_107509 0 0 0 0 0 chromatin 0.500231640801284 0.500231643775955 0.877435 5.9493421300516e-09 hm5C_site_60654 DeepMRMD:0.877435;iRNA_m5C:5.9493421300516e-09 60655 chr14 64909115 64909115 1 + C T UCEC 64909114 + 64909094 64909134 41 CTCAAGATGCACGGGGGCGGCCCCACGGTGAGTGGTGGGTT CTCAAGATGCACGGGGGCGGCTCCACGGTGAGTGGTGGGTT < 41bp 0.537395612787774 0.791654349260988 0.821502 0.9252401 prediction 0.508517472946429 Functional Gain - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64909114 chr14:64909115 nonsynonymous SNV 0.970 2 22 hm5C_associated_SNPs_107510 0 0 1 0 1 Nucleus 0.50023164391648 0.500231509822291 0.2074762 0 hm5C_site_60655 DeepMRMD:0.2074762;iRNA_m5C:0 60656 chr12 118575944 118575944 1 + C T SKCM 118575943 + 118575923 118575963 41 ATGCTCCCAGCAGGAAGGATCCCAAATACAGGTGAGAGGTG ATGCTCCCAGCAGGAAGGATCTCAAATACAGGTGAGAGGTG < 41bp 0.51400971267938 0.768259742662405 0.15740398 0.69359887 prediction 0.50850005996605 Functional Gain - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118575943 chr12:118575944 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107511 0 0 1 0 1 Ribosome 0.500231643922386 0.500231643922435 0.38719774 9.70334923522387e-14 hm5C_site_60656 DeepMRMD:0.38719774;iRNA_m5C:9.70334923522387e-14 60657 chr17 40460389 40460389 1 + C G rs144829445 40460388 + 40460368 40460408 41 GACCCTGCCGGCTGACTCCCCCGGGCTCTTCCCCAGCCCAT GACCCTGCCGGCTGACTCCCCGGGGCTCTTCCCCAGCCCAT < 41bp 0.450085656521527 0.754240064302038 0.9149008 0.9360522 prediction 0.508480128604077 Functional Gain - STAT5A ENSG00000126561 intronic Human protein_coding chr17:40460388 chr17:40460389 . . 0 22 hm5C_associated_SNPs_107512 0 0 1 0 0 Ribosome 0.500231643927056 0.500231643921095 0.0423028000000001 0 hm5C_site_60657 DeepMRMD:0.0423028000000001;iRNA_m5C:0 60658 chr1 175052996 175052996 1 + C G COAD 175052995 + 175052975 175053015 41 TACTACAAGCTGCGATATGGCCCCATGACAGGACAGGAGGT TACTACAAGCTGCGATATGGCGCCATGACAGGACAGGAGGT < 41bp 0.452825406003218 0.754235929043016 0.056359112 0.21613616 prediction 0.508471858086032 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175052995 chr1:175052996 nonsynonymous SNV 0.413 1 22 hm5C_associated_SNPs_107513 0 0 0 0 1 exosome 0.500231643920922 0.500231643985802 0 1.29759980538324e-10 hm5C_site_60658 DeepMRMD:0;iRNA_m5C:1.29759980538324e-10 60659 chr19 22786295 22786295 1 + T A UCEC 22786291 + 22786271 22786311 41 GGTGGGAGGCTCCGCCCCCCCATGTCCCTCCCACCCCTTTG GGTGGGAGGCTCCGCCCCCCCATGACCCTCCCACCCCTTTG < 41bp 0.546451823608587 0.80068276392816 0.18155056 0.24239182 prediction 0.508461880639147 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22786291 chr19:22786295 . . 0 25 hm5C_associated_SNPs_107514 0 0 0 0 0 unknown 0.500231645034963 0.500231659982285 0 2.98946447596649e-08 hm5C_site_60659 DeepMRMD:0;iRNA_m5C:2.98946447596649e-08 60660 chrX 68058642 68058642 1 + C A DLBC 68058641 + 68058621 68058661 41 TGTTGGTCACCTGCAATAGGCCAGAGCAGGAAATACGCTTT TGTTGGTCACCTGCAATAGGCAAGAGCAGGAAATACGCTTT < 41bp 0.507685119640361 0.761904495491397 0.22930804 0.41700673 prediction 0.508438751702073 Functional Gain - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68058641 chrX:68058642 nonsynonymous SNV 0.993 5 22 hm5C_associated_SNPs_107515 0 0 0 0 1 Endoplasmic reticulum 0.500231643920857 0.50023086316222 0 0 hm5C_site_60660 DeepMRMD:0;iRNA_m5C:0 60661 chr19 9297131 9297131 1 + T C COAD 9297129 + 9297109 9297149 41 TATTCACGAATTGCTTCATCCATAAGGAAGATGTCCTCATC TATTCACGAATTGCTTCATCCACAAGGAAGATGTCCTCATC < 41bp 0.501675071773736 0.755893246181923 0.12305501 0.088558584 prediction 0.508436348816374 Functional Gain - OR7D2 ENSG00000188000 CDS Human protein_coding chr19:9297129 chr19:9297131 nonsynonymous SNV 0.079 1 23 hm5C_associated_SNPs_107516 0 0 0 0 0 Nucleus 0.500231643920206 0.500231643888777 0 0 hm5C_site_60661 DeepMRMD:0;iRNA_m5C:0 60662 chr1 46650664 46650664 1 + T A UCEC 46650660 + 46650640 46650680 41 CTGTGGCTTCACCAACTATACGGATTTTGAGGACTCACCCT CTGTGGCTTCACCAACTATACGGAATTTGAGGACTCACCCT < 41bp 0.597129115780175 0.851342536094304 0.22601524 0.45695475 prediction 0.508426840628258 Functional Gain - TSPAN1 ENSG00000117472 CDS Human protein_coding chr1:46650660 chr1:46650664 nonsynonymous SNV 0.882 5 25 hm5C_associated_SNPs_107517 0 0 0 0 1 Ribosome 0.50023164391912 0.500231643921092 0 3.94506649570303e-12 hm5C_site_60662 DeepMRMD:0;iRNA_m5C:3.94506649570303e-12 60663 chr1 11766571 11766571 1 + C A LUSC 11766567 + 11766547 11766587 41 GGGGCTGTGGTCACCGCCACCAGGCAGGCCTCCAGGCTGCC GGGGCTGTGGTCACCGCCACCAGGAAGGCCTCCAGGCTGCC < 41bp 0.664932252579059 0.919131126271773 0.9034147 0.9097837 prediction 0.508397747385428 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11766567 chr1:11766571 nonsynonymous SNV 0.049 0 25 hm5C_associated_SNPs_107518 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.0127379999999999 0 hm5C_site_60663 DeepMRMD:0.0127379999999999;iRNA_m5C:0 60664 chr12 7290621 7290621 1 + T C STAD 7290619 + 7290599 7290639 41 CCTTCCTCTACTGGCCCCTGCTTGAGAGTGCCCGCCCAGTC CCTTCCTCTACTGGCCCCTGCTCGAGAGTGCCCGCCCAGTC < 41bp 0.571769774524398 0.825965420310056 0.067599624 0.16824642 prediction 0.508391291571315 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7290619 chr12:7290621 synonymous SNV . 0 23 hm5C_associated_SNPs_107519 0 0 1 0 2 Endoplasmic reticulum 0.500231643921092 0.500231642837458 0 0 hm5C_site_60664 DeepMRMD:0;iRNA_m5C:0 60665 chr18 13826321 13826321 1 + T C PRAD 13826319 + 13826299 13826339 41 CTGTACTCAGAATCCACCTACGTCATCCTGTGCCTCATCTC CTGTACTCAGAATCCACCTACGCCATCCTGTGCCTCATCTC < 41bp 0.506120915755336 0.760306157622542 0.13905105 0.11687052 prediction 0.508370483734411 Functional Gain - MC5R ENSG00000176136 CDS Human protein_coding chr18:13826319 chr18:13826321 nonsynonymous SNV 0.105 2 23 hm5C_associated_SNPs_107520 0 0 0 0 0 unknown 0.500231647876076 0.500231627162048 0 0 hm5C_site_60665 DeepMRMD:0;iRNA_m5C:0 60666 chr10 88930319 88930319 1 + C A UCEC 88930318 + 88930298 88930338 41 CCTACCTCAGAGATCTTCCTCCGAGGCAGCCTCAGAGGGTG CCTACCTCAGAGATCTTCCTCAGAGGCAGCCTCAGAGGGTG < 41bp 0.511388247659923 0.765568350358746 0.59617084 0.8730879 prediction 0.508360205397645 Functional Gain - FAM35A ENSG00000122376 CDS Human protein_coding chr10:88930318 chr10:88930319 nonsynonymous SNV 0.736 0 22 hm5C_associated_SNPs_107521 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.55383412 0 hm5C_site_60666 DeepMRMD:0.55383412;iRNA_m5C:0 60667 chr12 50349765 50349765 1 + C G rs467323 50349764 + 50349744 50349784 41 AGACCCCTGCCTTGGGGGTTCCGGGAATGATGCAACTGGTT AGACCCCTGCCTTGGGGGTTCGGGGAATGATGCAACTGGTT < 41bp 0.584588575727204 0.838768258088288 0.70234764 0.82090825 prediction 0.508359364722169 Functional Gain - LOC101927318 ENSG00000257378 ncRNA_exonic Human antisense chr12:50349764 chr12:50349765 . . 0 22 hm5C_associated_SNPs_107522 0 0 0 2 0 unknown 0.500231643921092 0.500231643921092 0.23712122 0 hm5C_site_60667 DeepMRMD:0.23712122;iRNA_m5C:0 60668 chr6 47775918 47775918 1 + T C UCEC 47775916 + 47775896 47775936 41 ATGTTGATTTGTGCTGGATTCCTGATTGCCTGGATTCCTTA ATGTTGATTTGTGCTGGATTCCCGATTGCCTGGATTCCTTA < 41bp 0.562949912684861 0.817125409768521 0.025069416 0.40423432 prediction 0.50835099416732 Functional Gain - OPN5 ENSG00000124818 CDS Human protein_coding chr6:47775916 chr6:47775918 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_107523 0 0 0 0 1 exosome 0.500233388354565 0.500231643959925 0 0 hm5C_site_60668 DeepMRMD:0;iRNA_m5C:0 60669 chr11 82879770 82879770 1 + T A LUAD 82879766 + 82879746 82879786 41 GGTTTGATGGGTCACCAGGACAAATGGGGGGAGGAGGCCCT GGTTTGATGGGTCACCAGGACAAAAGGGGGGAGGAGGCCCT < 41bp 0.429042288455174 0.754175044670454 0.66317016 0.41680008 prediction 0.508350089340909 Functional Gain - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82879766 chr11:82879770 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_107524 0 0 1 0 0 Nucleus 0.500231643921093 0.500231643921092 0 0 hm5C_site_60669 DeepMRMD:0;iRNA_m5C:0 60670 chr16 11275085 11275085 1 + T G rs201853338 11275083 + 11275063 11275103 41 GCTATGTCTTCAGGAGCTCCCGTCAAACCTCATAGCTGGGG GCTATGTCTTCAGGAGCTCCCGGCAAACCTCATAGCTGGGG < 41bp 0.561877854621194 0.816040078727263 0.15918112 0.40845737 prediction 0.508324448212139 Functional Gain - CLEC16A ENSG00000038532 UTR3 Human protein_coding chr16:11275083 chr16:11275085 . . 0 23 hm5C_associated_SNPs_107525 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_60670 DeepMRMD:0;iRNA_m5C:0 60671 chr10 3151656 3151656 1 + T A rs202105167 3151652 + 3151632 3151672 41 ACCACGCCGTGCGCCTGCCGCTGATGGAGTGCGTGCAGATG ACCACGCCGTGCGCCTGCCGCTGAAGGAGTGCGTGCAGATG < 41bp 0.441990792866648 0.754158318619798 0.20544016 0.18770552 prediction 0.508316637239595 Functional Gain - PFKP ENSG00000067057 CDS Human protein_coding chr10:3151652 chr10:3151656 nonsynonymous SNV 0.764 2 25 hm5C_associated_SNPs_107526 0 0 1 0 1 Nucleus 0.50023163788202 0.500230430141947 0 0 hm5C_site_60671 DeepMRMD:0;iRNA_m5C:0 60672 chr12 113349021 113349021 1 + T A LUSC 113349017 + 113348997 113349037 41 AGCTCAAGAGCCTCATCCGCCTAGTCAAGCACTGGTACCAA AGCTCAAGAGCCTCATCCGCCTAGACAAGCACTGGTACCAA < 41bp 0.620883966152601 0.875037501230851 0.19989917 0.26073384 prediction 0.508307070156501 Functional Gain - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113349017 chr12:113349021 nonsynonymous SNV 0.993 3 25 hm5C_associated_SNPs_107527 0 0 0 0 1 Ribosome 0.500231627174304 0.500231094669169 0 0 hm5C_site_60672 DeepMRMD:0;iRNA_m5C:0 60673 chr19 31039962 31039962 1 + C T SKCM 31039961 + 31039941 31039981 41 GCCCACTCTGAAGAGGATGTCCCCATCCTGATCCCCGAAAC GCCCACTCTGAAGAGGATGTCTCCATCCTGATCCCCGAAAC < 41bp 0.518070324634215 0.772223373448214 0.21955529 0.94046414 prediction 0.508306097627999 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:31039961 chr19:31039962 nonsynonymous SNV 0.677 0 22 hm5C_associated_SNPs_107528 0 0 1 0 0 exosome 0.500230711572702 0.500143325176944 0.88092828 0 hm5C_site_60673 DeepMRMD:0.88092828;iRNA_m5C:0 60674 chr15 45671337 45671337 1 + T G rs189328721 45671335 + 45671315 45671355 41 CTTTGGCCATATGCCCCTGGCTTGAGAAACTCCGTCATGAA CTTTGGCCATATGCCCCTGGCTGGAGAAACTCCGTCATGAA < 41bp 0.60581040903215 0.85996188261184 0.050612807 0.19874355 prediction 0.508302947159381 Functional Gain - GATM ENSG00000171766 intronic Human protein_coding chr15:45671335 chr15:45671337 . . 0 23 hm5C_associated_SNPs_107529 0 0 0 0 0 Endoplasmic reticulum 0.500231550650772 0.500231646155904 0 1.91010263828062e-07 hm5C_site_60674 DeepMRMD:0;iRNA_m5C:1.91010263828062e-07 60675 chr11 45949008 45949008 1 + C G rs185951842 45949004 + 45948984 45949024 41 GCTGCCCGGCAGGACGTGGCCTACCATGTGGTGTACCGTGA GCTGCCCGGCAGGACGTGGCCTACGATGTGGTGTACCGTGA < 41bp 0.469345873203085 0.754145872268325 0.0137556195 0.03688115 prediction 0.508291744536651 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949004 chr11:45949008 nonsynonymous SNV 0.992 4 25 hm5C_associated_SNPs_107530 0 0 1 0 0 chromatin 0.50023164390801 0.500231643450965 0 0 hm5C_site_60675 DeepMRMD:0;iRNA_m5C:0 60676 chr19 36124064 36124064 1 + T G LUSC 36124062 + 36124042 36124082 41 CCCTCGTGGGCCCCCCTCTGCCTGGGCCCCCTGGACCACCC CCCTCGTGGGCCCCCCTCTGCCGGGGCCCCCTGGACCACCC < 41bp 0.643395962935587 0.897529263430982 0.15108341 0.92896765 prediction 0.508266600990791 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124062 chr19:36124064 synonymous SNV . 0 23 hm5C_associated_SNPs_107531 0 0 1 0 4 Ribosome 0.500231643921056 0.500231643920898 0.8579353 0 hm5C_site_60676 DeepMRMD:0.8579353;iRNA_m5C:0 60677 chr19 4217922 4217922 1 + T A LUSC 4217918 + 4217898 4217938 41 TGCCGGCCTCTGAGCACCGCCGGCTGCAGGAGGAGGCCCTG TGCCGGCCTCTGAGCACCGCCGGCAGCAGGAGGAGGCCCTG < 41bp 0.588113789701438 0.842245797535317 0.8782164 0.78525835 prediction 0.508264015667759 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4217918 chr19:4217922 nonsynonymous SNV 0.900 1 25 hm5C_associated_SNPs_107532 0 0 0 0 0 exosome 0.500231643921092 0.500231643921072 0 0 hm5C_site_60677 DeepMRMD:0;iRNA_m5C:0 60678 chr6 4079581 4079581 1 + C G rs10080424 4079580 + 4079560 4079600 41 GCCCTGTCCCTGCGCCCCGCCCGGCCTCCCCCGCGGGGCTG GCCCTGTCCCTGCGCCCCGCCGGGCCTCCCCCGCGGGGCTG < 41bp 0.557391850343908 0.811522287139724 0.5088171 0.9034458 prediction 0.508260873591631 Functional Gain - C6orf201 ENSG00000185689 UTR5 Human protein_coding chr6:4079580 chr6:4079581 . . 0 22 hm5C_associated_SNPs_107533 0 0 0 0 0 chromatin 0.500231643921059 0.500231643921092 0.7892574 6.72795152922845e-14 hm5C_site_60678 DeepMRMD:0.7892574;iRNA_m5C:6.72795152922845e-14 60679 chr16 5065918 5065918 1 + C A rs533380330 5065914 + 5065894 5065934 41 CCTGGGTTTCTGCTAAGTTCCAGGCAGTGATGGGGTGACTG CCTGGGTTTCTGCTAAGTTCCAGGAAGTGATGGGGTGACTG < 41bp 0.389865269346475 0.754097433741064 0.3541244 0.5144395 prediction 0.508194867482129 Functional Gain - SEC14L5 ENSG00000267072 ncRNA_intronic Human lincRNA chr16:5065914 chr16:5065918 . . 0 25 hm5C_associated_SNPs_107534 0 0 0 0 0 exosome 0.500231643914758 0.500231643929734 0.0288790000000001 2.99527069813621e-11 hm5C_site_60679 DeepMRMD:0.0288790000000001;iRNA_m5C:2.99527069813621e-11 60680 chr11 710154 710154 1 + C G rs185291412 710153 + 710133 710173 41 CCCTCCGGGACAGAAACCCCCCGGGCACAGGCTGCTGGTCC CCCTCCGGGACAGAAACCCCCGGGGCACAGGCTGCTGGTCC < 41bp 0.546544794358292 0.800637581035855 0.8503909 0.93518376 prediction 0.508185573355126 Functional Gain - EPS8L2 ENSG00000269915 ncRNA_intronic Human antisense chr11:710153 chr11:710154 . . 0 22 hm5C_associated_SNPs_107535 0 0 1 0 0 Cytosol 0.500231643921096 0.500231644173359 0.16958572 5.04525532463163e-10 hm5C_site_60680 DeepMRMD:0.16958572;iRNA_m5C:5.04525532463163e-10 60681 chr3 51749276 51749276 1 + C G BRCA 51749272 + 51749252 51749292 41 CCTCACCCTCAGCCGGCCCCCTGCCCGCCTCTCGCTGCAGT CCTCACCCTCAGCCGGCCCCCTGCGCGCCTCTCGCTGCAGT < 41bp 0.456664803997539 0.754089263976482 0.03588897 0.030650765 prediction 0.508178527952965 Functional Gain - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51749272 chr3:51749276 nonsynonymous SNV 0.349 5 25 hm5C_associated_SNPs_107536 0 0 0 0 0 Endoplasmic reticulum 0.500232237986743 0.500145731632562 0 0 hm5C_site_60681 DeepMRMD:0;iRNA_m5C:0 60682 chr16 27375239 27375239 1 + C G rs2234924 27375235 + 27375215 27375255 41 GCCACCTCCTGGAAGGCAGCCAGGCTGGCAGATTTCCAAAA GCCACCTCCTGGAAGGCAGCCAGGGTGGCAGATTTCCAAAA < 41bp 0.571141513478156 0.825226397113716 0.4504259 0.88619864 prediction 0.50816976727112 Functional Gain - IL4R ENSG00000077238 UTR3 Human protein_coding chr16:27375235 chr16:27375239 . . 0 25 hm5C_associated_SNPs_107537 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.77239728 0 hm5C_site_60682 DeepMRMD:0.77239728;iRNA_m5C:0 60683 chr12 24365402 24365402 1 + C A LUSC 24365398 + 24365378 24365418 41 GATGTGTAGGAGCTAAGACACACTCCAGGGGAGCTGTGGAA GATGTGTAGGAGCTAAGACACACTACAGGGGAGCTGTGGAA < 41bp 0.410723751498926 0.7540751231075 0.19286636 0.31728455 prediction 0.508150246215 Functional Gain - MIR920 ENSG00000216192 ncRNA_exonic Human miRNA chr12:24365398 chr12:24365402 . . 0 25 hm5C_associated_SNPs_107538 0 0 0 0 0 unknown 0.50023164392545 0.500231643921092 0 0 hm5C_site_60683 DeepMRMD:0;iRNA_m5C:0 60684 chr8 105361083 105361083 1 + T A LUAD 105361079 + 105361059 105361099 41 AGGCAGGAATGCTTTGATTGCAGCTGGCACAGGGATCGTCA AGGCAGGAATGCTTTGATTGCAGCAGGCACAGGGATCGTCA < 41bp 0.610385016739146 0.864457749273345 0.6485784 0.8614402 prediction 0.508145465068399 Functional Gain - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361079 chr8:105361083 synonymous SNV . 0 25 hm5C_associated_SNPs_107539 0 0 0 0 0 exosome 0.50023179267852 0.500231691043067 0.4257236 0 hm5C_site_60684 DeepMRMD:0.4257236;iRNA_m5C:0 60685 chr17 7983633 7983633 1 + C A LUAD 7983629 + 7983609 7983649 41 CACGAATGTTTGCAGTCCAACAGGCCGCGGACTTTGAAAGC CACGAATGTTTGCAGTCCAACAGGACGCGGACTTTGAAAGC < 41bp 0.379142007194188 0.754063483040238 0.47147918 0.6662353 prediction 0.508126966080477 Functional Gain - ALOX12B ENSG00000179477;ENSG00000214999 CDS Human other chr17:7983629 chr17:7983633 nonsynonymous SNV 0.999 5 25 hm5C_associated_SNPs_107540 0 0 0 0 0 exosome 0.50023163964146 0.500231639204864 0.3324706 0 hm5C_site_60685 DeepMRMD:0.3324706;iRNA_m5C:0 60686 chr4 8443034 8443034 1 + C A rs61733546 8443030 + 8443010 8443050 41 CCCGTGGCAATTCGGAGTTGCTGGCCTTCCTCACCAGCTCC CCCGTGGCAATTCGGAGTTGCTGGACTTCCTCACCAGCTCC < 41bp 0.362538622185719 0.754053248623799 0.1635148 0.8008977 prediction 0.508106497247597 Functional Gain - TRMT44 ENSG00000155275 CDS Human protein_coding chr4:8443030 chr4:8443034 nonsynonymous SNV 0.752 0 25 hm5C_associated_SNPs_107541 0 0 1 0 0 Cytosol 0.500231643919043 0.500231643975771 0.6017954 1.13456355421704e-10 hm5C_site_60686 DeepMRMD:0.6017954;iRNA_m5C:1.13456355421704e-10 60687 chr3 195953863 195953863 1 + C A LUSC 195953859 + 195953839 195953879 41 TGGGCCCTGTGGAACTTGCCCTCACTAGCATCCTGACCTTG TGGGCCCTGTGGAACTTGCCCTCAATAGCATCCTGACCTTG < 41bp 0.32379407081067 0.754046275784704 0.0704841 0.036477953 prediction 0.508092551569409 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195953859 chr3:195953863 nonsynonymous SNV 0.596 0 25 hm5C_associated_SNPs_107542 0 0 1 0 1 exosome 0.500231643921088 0.500231643921092 0 8.65973959207622e-15 hm5C_site_60687 DeepMRMD:0;iRNA_m5C:8.65973959207622e-15 60688 chr17 32953250 32953250 1 + C A UCEC 32953246 + 32953226 32953266 41 TCGCACACGCGGCTGGCCTTCTTCCTGCGGGAGGCGCGGCC TCGCACACGCGGCTGGCCTTCTTCATGCGGGAGGCGCGGCC < 41bp 0.336758127419955 0.754044956098393 0.3838734 0.9023385 prediction 0.508089912196786 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32953246 chr17:32953250 nonsynonymous SNV 0.996 4 25 hm5C_associated_SNPs_107543 0 0 0 0 0 exosome 0.500231642606298 0.500231647913702 0.804677 1.06148090317504e-08 hm5C_site_60688 DeepMRMD:0.804677;iRNA_m5C:1.06148090317504e-08 60689 chr4 100521862 100521862 1 + C T UCEC 100521861 + 100521841 100521881 41 CCTGTGGATTTGCTTCTCATCCCAATGAAGAACTCCTGAGA CCTGTGGATTTGCTTCTCATCTCAATGAAGAACTCCTGAGA < 41bp 0.500003020688637 0.754044064218108 0.0662823 0.053893596 prediction 0.508082087058941 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100521861 chr4:100521862 nonsynonymous SNV 0.941 4 22 hm5C_associated_SNPs_107544 0 0 1 0 1 cytosol 0.500231867530976 0.500247247539467 0 3.07600169813238e-05 hm5C_site_60689 DeepMRMD:0;iRNA_m5C:3.07600169813238e-05 60690 chr15 40711270 40711270 1 + C G rs2075625 40711266 + 40711246 40711286 41 AATTACTTGAACCCAGGAGGCGGACGTTGCAGTGAGCCGAG AATTACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAG < 41bp 0.564773652375691 0.818809815343552 0.9091654 0.93673563 prediction 0.508072325935722 Functional Gain - IVD ENSG00000128928 UTR3 Human protein_coding chr15:40711266 chr15:40711270 . . 0 25 hm5C_associated_SNPs_107545 1 0 1 0 0 Cytosol 0.500231643023299 0.500231645041594 0.0551404600000001 4.03658906300564e-09 hm5C_site_60690 DeepMRMD:0.0551404600000001;iRNA_m5C:4.03658906300564e-09 Isovaleryl-CoA dehydrogenase deficiency Small cell lung carcinoma Isovaleryl-CoA dehydrogenase deficiency 60691 chr13 50204744 50204744 1 + C A UCEC 50204743 + 50204723 50204763 41 ACGTGGAGCCTCTGAAAGCTCCTGGGCACGTGTCACTGACT ACGTGGAGCCTCTGAAAGCTCATGGGCACGTGTCACTGACT < 41bp 0.505921855048093 0.759956835367724 0.48786256 0.5393222 prediction 0.508069960639261 Functional Gain - ARL11 ENSG00000152213 CDS Human protein_coding chr13:50204743 chr13:50204744 nonsynonymous SNV 0.219 3 22 hm5C_associated_SNPs_107546 0 0 0 0 0 Nucleus 0.500231643922874 0.500232150970813 0.0786443999999999 1.01409587749401e-06 hm5C_site_60691 DeepMRMD:0.0786443999999999;iRNA_m5C:1.01409587749401e-06 60692 chr20 61598796 61598796 1 + C A UCEC 61598795 + 61598775 61598815 41 AACCTGGGGCTGTGCACCTTCCTGGTGTTTGGACAGGCTCA AACCTGGGGCTGTGCACCTTCATGGTGTTTGGACAGGCTCA < 41bp 0.50026104340875 0.754289355627094 0.21717441 0.3302058 prediction 0.508056624436689 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61598795 chr20:61598796 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_107547 0 0 1 0 0 Ribosome 0.500231640956045 0.500231643921092 0 5.93009419347368e-09 hm5C_site_60692 DeepMRMD:0;iRNA_m5C:5.93009419347368e-09 60693 chr19 9204695 9204695 1 + T A COAD 9204691 + 9204671 9204711 41 TTCTATGGGACCACCATTGGCGTCTATCTGTGTCCCTCCTC TTCTATGGGACCACCATTGGCGTCAATCTGTGTCCCTCCTC < 41bp 0.456362999348094 0.754013328170973 0.1648249 0.26888 prediction 0.508026656341946 Functional Gain - OR1M1 ENSG00000170929 CDS Human protein_coding chr19:9204691 chr19:9204695 nonsynonymous SNV 0.002 4 25 hm5C_associated_SNPs_107548 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_60693 DeepMRMD:0;iRNA_m5C:0 60694 chr5 54329636 54329636 1 + C A UCEC 54329632 + 54329612 54329652 41 TGATCTGTAAAGGTGTCTTCCACGCTATAGTCTCTGGAGGT TGATCTGTAAAGGTGTCTTCCACGATATAGTCTCTGGAGGT < 41bp 0.652937202729646 0.906948092023361 0.13258636 0.09853828 prediction 0.50802177858743 Functional Gain - GZMK ENSG00000113088 CDS Human protein_coding chr5:54329632 chr5:54329636 nonsynonymous SNV 0.173 4 25 hm5C_associated_SNPs_107549 0 0 0 0 0 exosome 0.50023175782476 0.500231643921123 0 0 hm5C_site_60694 DeepMRMD:0;iRNA_m5C:0 60695 chr1 100740390 100740390 1 + C T GBM 100740389 + 100740369 100740409 41 ACTTTTCATAGGGGATATTACCCAAAAGGGGGTGGTGAAGT ACTTTTCATAGGGGATATTACTCAAAAGGGGGTGGTGAAGT < 41bp 0.505452393495692 0.759448726049401 0.12814516 0.27063572 prediction 0.507992665107418 Functional Gain - RTCA ENSG00000137996 CDS Human protein_coding chr1:100740389 chr1:100740390 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107550 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60695 DeepMRMD:0;iRNA_m5C:0 60696 chr17 56247563 56247563 1 + C G CESC 56247562 + 56247542 56247582 41 AACTTCTACTGTGATGTTCCCCAAGTACTGAGACTTGCCTG AACTTCTACTGTGATGTTCCCGAAGTACTGAGACTTGCCTG < 41bp 0.441207092763364 0.753985645819032 0.09520027 0.8093604 prediction 0.507971291638064 Functional Gain - OR4D2 ENSG00000255713 CDS Human protein_coding chr17:56247562 chr17:56247563 nonsynonymous SNV 0.735 4 22 hm5C_associated_SNPs_107551 0 0 0 0 0 unknown 0.500231643886738 0.500231643921005 0.6187208 6.85351775331355e-11 hm5C_site_60696 DeepMRMD:0.6187208;iRNA_m5C:6.85351775331355e-11 60697 chr9 118068269 118068269 1 + T G rs75825293 118068266 + 118068246 118068286 41 CTTGAAGGGCTATTGAAGGCCGCTAGAAAGGTATTGTTTAC CTTGAAGGGCTATTGAAGGCCGCGAGAAAGGTATTGTTTAC < 41bp 0.415034496333828 0.753984515801825 0.17487037 0.3000587 prediction 0.50796903160365 Functional Gain - DEC1 ENSG00000173077 UTR5 Human protein_coding chr9:118068266 chr9:118068269 . . 0 24 hm5C_associated_SNPs_107552 0 0 0 0 2 unknown 0.50023165120104 0.500232393596598 0 1.48479111650168e-06 hm5C_site_60697 DeepMRMD:0;iRNA_m5C:1.48479111650168e-06 60698 chr10 134219536 134219536 1 + T C UCEC 134219534 + 134219514 134219554 41 TGGCCGGCGCGTGTTCTTGACATCAGTCTCGGCCAGAAGGA TGGCCGGCGCGTGTTCTTGACACCAGTCTCGGCCAGAAGGA < 41bp 0.531747916330051 0.785725649032905 0.27817175 0.334812 prediction 0.507955465405706 Functional Gain - PWWP2B ENSG00000171813 CDS Human protein_coding chr10:134219534 chr10:134219536 nonsynonymous SNV 0.987 1 23 hm5C_associated_SNPs_107553 0 0 1 0 0 chromatin 0.500231955246102 0.500231764241779 0 0 hm5C_site_60698 DeepMRMD:0;iRNA_m5C:0 60699 chr3 101574609 101574609 1 + C T SKCM 101574608 + 101574588 101574628 41 CTTCACTGTGCAGTCATAGCCCACAATGCTGTGGTCCATGA CTTCACTGTGCAGTCATAGCCTACAATGCTGTGGTCCATGA < 41bp 0.535666086760905 0.789640774172488 0.029360324 0.88752294 prediction 0.507949374823167 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101574608 chr3:101574609 nonsynonymous SNV 0.955 4 22 hm5C_associated_SNPs_107554 0 0 1 0 1 Endoplasmic reticulum 0.500248050866683 0.500231658214274 0.77504588 0 hm5C_site_60699 DeepMRMD:0.77504588;iRNA_m5C:0 60700 chr9 90534188 90534188 1 + C A LUAD 90534184 + 90534164 90534204 41 TCCCAGCGTCATCTTGTCTCCCAGCGTCATCTTGTCTCCCA TCCCAGCGTCATCTTGTCTCCCAGAGTCATCTTGTCTCCCA < 41bp 0.399450570478575 0.753971336088191 0.08821106 0.22825778 prediction 0.507942672176382 Functional Gain - SPATA31C1 ENSG00000230246 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90534184 chr9:90534188 . . 0 25 hm5C_associated_SNPs_107555 0 0 0 0 2 unknown 0.500231633381392 0.500231242943823 0 0 hm5C_site_60700 DeepMRMD:0;iRNA_m5C:0 60701 chr7 64349871 64349871 1 + T A rs884103 64349867 + 64349847 64349887 41 CCCCGCGGGACGCCAGGTTCCCGGTTTCTTCTAGGTCGCCC CCCCGCGGGACGCCAGGTTCCCGGATTCTTCTAGGTCGCCC < 41bp 0.520677644258306 0.774648976118782 0.66226363 0.8696922 prediction 0.507942663720953 Functional Gain - ZNF138;ZNF273 ENSG00000189316 ncRNA_exonic Human antisense chr7:64349867 chr7:64349871 . . 0 25 hm5C_associated_SNPs_107556 0 0 0 0 0 unknown 0.500231643920963 0.500231643921092 0.41485714 2.59348098552437e-13 hm5C_site_60701 DeepMRMD:0.41485714;iRNA_m5C:2.59348098552437e-13 60702 chr2 36737231 36737231 1 + C G SKCM 36737230 + 36737210 36737250 41 TCTGTGAGTGCCGCCCAAGGCCCAAGAAGTGCAGACCCATA TCTGTGAGTGCCGCCCAAGGCGCAAGAAGTGCAGACCCATA < 41bp 0.452822993965951 0.753968870861277 0.013660818 0.055920184 prediction 0.507937741722555 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36737230 chr2:36737231 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_107557 0 0 1 0 1 Nucleus 0.500231643921102 0.500231643921102 0 0 hm5C_site_60702 DeepMRMD:0;iRNA_m5C:0 60703 chr3 142496483 142496483 1 + T G UCEC 142496481 + 142496461 142496501 41 AATTTTATCACAGGTTTCGTCTTGATATATATCGATGTTTG AATTTTATCACAGGTTTCGTCTGGATATATATCGATGTTTG < 41bp 0.440451250730255 0.753957890255774 0.1361306 0.30386734 prediction 0.507915780511548 Functional Gain - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142496481 chr3:142496483 synonymous SNV . 0 23 hm5C_associated_SNPs_107558 0 0 0 0 1 Ribosome 0.500251318136283 0.500233113115119 0 0 hm5C_site_60703 DeepMRMD:0;iRNA_m5C:0 60704 chr1 37940207 37940207 1 + C A rs555847817 37940203 + 37940183 37940223 41 GACTCGGCCCCATGGAGACGCCGCCGGCCGCCGCTGGCGCA GACTCGGCCCCATGGAGACGCCGCAGGCCGCCGCTGGCGCA < 41bp 0.432957292768433 0.75394982052505 0.27420413 0.33429307 prediction 0.5078996410501 Functional Gain - ZC3H12A ENSG00000163874 UTR5 Human protein_coding chr1:37940203 chr1:37940207 . . 0 25 hm5C_associated_SNPs_107559 0 0 1 0 1 Nucleus 0.50023421286008 0.500258996582652 0 4.95674451443939e-05 hm5C_site_60704 DeepMRMD:0;iRNA_m5C:4.95674451443939e-05 60705 chr1 228327999 228327999 1 + C G rs4653908 228327998 + 228327978 228328018 41 TCAGTGGGCGGAAGAGGTGGCCCCGGATGCTGCGGCGCCCG TCAGTGGGCGGAAGAGGTGGCGCCGGATGCTGCGGCGCCCG < 41bp 0.556611760445542 0.810559017330265 0.8610865 0.8801372 prediction 0.507894513769447 Functional Gain - GUK1 ENSG00000143774 UTR5 Human protein_coding chr1:228327998 chr1:228327999 . . 0 22 hm5C_associated_SNPs_107560 0 0 1 0 1 Endoplasmic reticulum 0.500231643921108 0.50023164392109 0.0381014 0 hm5C_site_60705 DeepMRMD:0.0381014;iRNA_m5C:0 60706 chr17 73812971 73812971 1 + C T CESC 73812970 + 73812950 73812990 41 TGCCTGTGAGCCCCTCCAGCCCGCATGCCCCTGACCTCAGT TGCCTGTGAGCCCCTCCAGCCTGCATGCCCCTGACCTCAGT < 41bp 0.483792284019509 0.753938829965413 0.114346 0.48039213 prediction 0.507877659930825 Functional Gain - UNK ENSG00000132478 CDS Human protein_coding chr17:73812970 chr17:73812971 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_107561 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921093 0 1.55431223447522e-15 hm5C_site_60706 DeepMRMD:0;iRNA_m5C:1.55431223447522e-15 60707 chr19 14676612 14676612 1 + C A LIHC 14676608 + 14676588 14676628 41 ATGACCATCTGGGCCAAGGGCAAGCACCGCAGCTACCTGAA ATGACCATCTGGGCCAAGGGCAAGAACCGCAGCTACCTGAA < 41bp 0.663368908496127 0.917291631395 0.13756487 0.36496538 prediction 0.507845445797747 Functional Gain - TECR ENSG00000099797 CDS Human protein_coding chr19:14676608 chr19:14676612 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_107562 0 0 0 1 1 Ribosome 0.500231643921092 0.500231643921066 0 0 hm5C_site_60707 DeepMRMD:0;iRNA_m5C:0 60708 chr16 5050737 5050737 1 + T A LIHC 5050733 + 5050713 5050753 41 AGGCCGTGGGGGAGGAGGCGCTGCTGCGGCATGTGAGTCAG AGGCCGTGGGGGAGGAGGCGCTGCAGCGGCATGTGAGTCAG < 41bp 0.61961381230742 0.87352732547625 0.34739077 0.5404556 prediction 0.50782702633766 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5050733 chr16:5050737 nonsynonymous SNV 0.998 4 25 hm5C_associated_SNPs_107563 0 0 0 0 2 exosome 0.500231643926042 0.500231644054313 0.0809112000000001 2.56542342924604e-10 hm5C_site_60708 DeepMRMD:0.0809112000000001;iRNA_m5C:2.56542342924604e-10 60709 chr9 35673918 35673918 1 + C G rs147829414 35673917 + 35673897 35673937 41 GTTTCCAATGCACGTACAGCCCGTACACACCGTGTGCTGGG GTTTCCAATGCACGTACAGCCGGTACACACCGTGTGCTGGG < 41bp 0.463348490185633 0.753902765838583 0.044341385 0.35655648 prediction 0.507805531677166 Functional Gain - CA9 ENSG00000107159;ENSG00000137135 UTR5 Human other chr9:35673917 chr9:35673918 . . 0 22 hm5C_associated_SNPs_107564 0 0 0 0 0 Endoplasmic reticulum 0.500231643920983 0.500231643921092 0 2.18491891246231e-13 hm5C_site_60709 DeepMRMD:0;iRNA_m5C:2.18491891246231e-13 60710 chr9 130428533 130428533 1 + C G BRCA 130428529 + 130428509 130428549 41 TGCTCCATGAATTGACTTTTCAGGCTATGAGTTATGATCTG TGCTCCATGAATTGACTTTTCAGGGTATGAGTTATGATCTG < 41bp 0.567529701707349 0.82143101825026 0.47996986 0.8968749 prediction 0.507802633085823 Functional Gain - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130428529 chr9:130428533 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_107565 0 0 1 0 2 Cytosol 0.500231643920412 0.500231643918077 0.7937498 0 hm5C_site_60710 DeepMRMD:0.7937498;iRNA_m5C:0 60711 chr7 27209296 27209296 1 + C G rs577697542 27209295 + 27209275 27209315 41 CTGGCCCGGCCCAGCCCAGCCCCTAGGCAACCTGCGCCCGC CTGGCCCGGCCCAGCCCAGCCGCTAGGCAACCTGCGCCCGC < 41bp 0.579573793132624 0.833470035528919 0.42152193 0.8705002 prediction 0.507792484792589 Functional Gain - HOXA10-AS ENSG00000253187 ncRNA_exonic Human antisense chr7:27209295 chr7:27209296 . . 0 22 hm5C_associated_SNPs_107566 0 0 0 0 1 unknown 0.500231643921092 0.500231643889182 0.7410004 0 hm5C_site_60711 DeepMRMD:0.7410004;iRNA_m5C:0 60712 chr5 10262641 10262641 1 + C A UCEC 10262637 + 10262617 10262657 41 CTTCACGATGCTTTGTGTGTCATCCGGAACCTCATCCGCGA CTTCACGATGCTTTGTGTGTCATCAGGAACCTCATCCGCGA < 41bp 0.340535024325741 0.753890816628778 0.053955287 0.065222085 prediction 0.507781633257556 Functional Gain - CCT5 ENSG00000150753 CDS Human protein_coding chr5:10262637 chr5:10262641 synonymous SNV . 0 25 hm5C_associated_SNPs_107567 0 0 1 0 2 Cytosol 0.500233571883407 0.500231643920997 0 0 hm5C_site_60712 DeepMRMD:0;iRNA_m5C:0 60713 chr1 22987744 22987744 1 + C A LUAD 22987743 + 22987723 22987763 41 CAACACCTTCCAGGTCACCACCGGTGGCATGGTCCTCAAGC CAACACCTTCCAGGTCACCACAGGTGGCATGGTCCTCAAGC < 41bp 0.524839031600133 0.778716735549079 0.32523862 0.9211368 prediction 0.50775540789789 Functional Gain - C1QB ENSG00000173369 CDS Human protein_coding chr1:22987743 chr1:22987744 synonymous SNV . 0 22 hm5C_associated_SNPs_107568 0 0 0 0 0 exosome 0.500231643893845 0.500231643920904 0.8422736 5.41182654245631e-11 hm5C_site_60713 DeepMRMD:0.8422736;iRNA_m5C:5.41182654245631e-11 60714 chr9 120474822 120474822 1 + C G OV 120474818 + 120474798 120474838 41 TGGTGGCTGTGGAGACAAATCTAGCATCTCTAGAGAACTTC TGGTGGCTGTGGAGACAAATCTAGGATCTCTAGAGAACTTC < 41bp 0.545122169344474 0.798999325805663 0.07900655 0.42002785 prediction 0.507754312922378 Functional Gain - TLR4 ENSG00000136869 CDS Human protein_coding chr9:120474818 chr9:120474822 nonsynonymous SNV 0.007 1 25 hm5C_associated_SNPs_107569 0 0 0 0 0 cytosol 0.500231643919286 0.500231643915715 0 0 hm5C_site_60714 DeepMRMD:0;iRNA_m5C:0 60715 chr2 121742179 121742179 1 + C T UCEC 121742178 + 121742158 121742198 41 CAGCGCAATGACGTGCACCTCCGCACACCGCTGCTCAAAGA CAGCGCAATGACGTGCACCTCTGCACACCGCTGCTCAAAGA < 41bp 0.506023404362919 0.759898823810759 0.3802641 0.37727654 prediction 0.50775083889568 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121742178 chr2:121742179 nonsynonymous SNV 0.019 4 22 hm5C_associated_SNPs_107570 0 0 0 0 0 Endoplasmic reticulum 0.500242395473009 0.500231647453573 0 0 hm5C_site_60715 DeepMRMD:0;iRNA_m5C:0 60716 chr6 130381246 130381246 1 + T C rs7451021 130381244 + 130381224 130381264 41 TGAAATTAGAAGGCGTGGATCCTGAGCATCAGTCTGTGTAC TGAAATTAGAAGGCGTGGATCCCGAGCATCAGTCTGTGTAC < 41bp 0.469261196482101 0.753871348764679 0.06954396 0.22648314 prediction 0.507742697529357 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130381244 chr6:130381246 synonymous SNV . 0 23 hm5C_associated_SNPs_107571 0 0 1 0 2 nucleoplasm 0.500231759220663 0.500231632911207 0 0 hm5C_site_60716 DeepMRMD:0;iRNA_m5C:0 60717 chr5 64867906 64867906 1 + T A STAD 64867902 + 64867882 64867922 41 GATTGAATACTGGACTGGGCCTCCTCATGAATATAAATTCC GATTGAATACTGGACTGGGCCTCCACATGAATATAAATTCC < 41bp 0.401742234344549 0.753868815929456 0.052414536 0.899706 prediction 0.507737631858913 Functional Gain - PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64867902 chr5:64867906 synonymous SNV . 0 25 hm5C_associated_SNPs_107572 0 0 1 0 0 chromatin 0.500231643998314 0.500231647150394 0.799412 6.30415919466998e-09 hm5C_site_60717 DeepMRMD:0.799412;iRNA_m5C:6.30415919466998e-09 60718 chr8 145730772 145730772 1 + C A UCEC 145730771 + 145730751 145730791 41 CTACCTGGACGAGGAGCGTGCCTGGGCGCTGGACGTGGCCG CTACCTGGACGAGGAGCGTGCATGGGCGCTGGACGTGGCCG < 41bp 0.502333041060126 0.75620097216685 0.55451447 0.74365497 prediction 0.507735862213449 Functional Gain - GPT ENSG00000167701 CDS Human protein_coding chr8:145730771 chr8:145730772 synonymous SNV . 0 22 hm5C_associated_SNPs_107573 0 0 1 0 0 Cytosol 0.500231653651755 0.500231644919975 0.378281 0 hm5C_site_60718 DeepMRMD:0.378281;iRNA_m5C:0 60719 chr12 113515241 113515241 1 + C A LUAD 113515237 + 113515217 113515257 41 TTTCGAGTACAGGCACCATGCGGCCCGTGCGGCGCAACTTC TTTCGAGTACAGGCACCATGCGGCACGTGCGGCGCAACTTC < 41bp 0.666134095164476 0.919999492815318 0.48455095 0.7968411 prediction 0.507730795301684 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113515237 chr12:113515241 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_107574 0 0 0 0 1 Endoplasmic reticulum 0.500231647273027 0.500240918832851 0.5936822 1.85431196477737e-05 hm5C_site_60719 DeepMRMD:0.5936822;iRNA_m5C:1.85431196477737e-05 60720 chr4 83822022 83822022 1 + C A PAAD 83822018 + 83821998 83822038 41 ACCGTGCTCAGCCGGGAGCGCGGCCTCTCCTTCCACCAGTG ACCGTGCTCAGCCGGGAGCGCGGCATCTCCTTCCACCAGTG < 41bp 0.656357378442463 0.910220964527187 0.6224171 0.83088803 prediction 0.507727172169448 Functional Gain - THAP9 ENSG00000168152 CDS Human protein_coding chr4:83822018 chr4:83822022 nonsynonymous SNV 0.951 1 25 hm5C_associated_SNPs_107575 0 0 0 0 1 chromatin 0.500231643921092 0.500249887437706 0.41694186 3.64870332265621e-05 hm5C_site_60720 DeepMRMD:0.41694186;iRNA_m5C:3.64870332265621e-05 60721 chr11 33369523 33369523 1 + C A UCEC 33369519 + 33369499 33369539 41 TTGCACATGTTGTCTGGCCTCAGCCTGCCACTACCAAGAAA TTGCACATGTTGTCTGGCCTCAGCATGCCACTACCAAGAAA < 41bp 0.336261170110624 0.753856115253508 0.2755844 0.40807486 prediction 0.507712230507016 Functional Gain - HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33369519 chr11:33369523 nonsynonymous SNV 0.746 4 25 hm5C_associated_SNPs_107576 0 0 0 0 1 Cytosol 0.500231643921093 0.500231643915194 0 0 hm5C_site_60721 DeepMRMD:0;iRNA_m5C:0 60722 chr12 50453612 50453612 1 + C T OV 50453611 + 50453591 50453631 41 CTGCAGGACAAAGCCAACTTCCGCAGCTTCAAACCCAAACC CTGCAGGACAAAGCCAACTTCTGCAGCTTCAAACCCAAACC < 41bp 0.491157003251433 0.753853711066198 0.24677789 0.11371848 prediction 0.507707422132396 Functional Gain - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50453611 chr12:50453612 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_107577 0 0 1 0 0 exosome 0.500231523374592 0.500231642024711 0 2.37300236793914e-07 hm5C_site_60722 DeepMRMD:0;iRNA_m5C:2.37300236793914e-07 60723 chr16 14755800 14755800 1 + C G KIRP 14755799 + 14755779 14755819 41 CTATACGCCCTCAAGAGCTCCCCCAGGCTGAGTCTGCTCTA CTATACGCCCTCAAGAGCTCCGCCAGGCTGAGTCTGCTCTA < 41bp 0.600096346946624 0.853946105033582 0.11641693 0.24802989 prediction 0.507699516173916 Functional Gain - BFAR ENSG00000103429 CDS Human protein_coding chr16:14755799 chr16:14755800 nonsynonymous SNV 0.349 4 22 hm5C_associated_SNPs_107578 0 0 1 0 1 Ribosome 0.5002316439173 0.500231643931237 0 2.78743694792638e-11 hm5C_site_60723 DeepMRMD:0;iRNA_m5C:2.78743694792638e-11 60724 chr21 43979198 43979198 1 + C A LIHC 43979197 + 43979177 43979217 41 TCACAGGGGCCTTGAAAATTCCAGTAAGTAAACGTGCCCAG TCACAGGGGCCTTGAAAATTCAAGTAAGTAAACGTGCCCAG < 41bp 0.520727100021082 0.774574740752866 0.38384202 0.50601417 prediction 0.507695281463567 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979197 chr21:43979198 nonsynonymous SNV 0.012 4 22 hm5C_associated_SNPs_107579 0 0 0 0 1 Nucleus 0.500231643933046 0.500231643919337 0.0120283400000001 0 hm5C_site_60724 DeepMRMD:0.0120283400000001;iRNA_m5C:0 60725 chr6 112375585 112375585 1 + C G BLCA 112375581 + 112375561 112375601 41 ATGCAGGGGCTCCTCTTCTCCACTCTTCTGCTTGCTGGCCT ATGCAGGGGCTCCTCTTCTCCACTGTTCTGCTTGCTGGCCT < 41bp 0.466935882901265 0.753842840404714 0.1816149 0.122179806 prediction 0.507685680809429 Functional Gain - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112375581 chr6:112375585 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_107580 0 0 0 0 2 unknown 0.500231643338939 0.500248664824725 0 3.4042971572168e-05 hm5C_site_60725 DeepMRMD:0;iRNA_m5C:3.4042971572168e-05 60726 chr7 23221735 23221735 1 + C G PAAD 23221734 + 23221714 23221754 41 TGTCAATTCTTCCTTCAAGGCCGGTGCCGCTTTGGAGATCG TGTCAATTCTTCCTTCAAGGCGGGTGCCGCTTTGGAGATCG < 41bp 0.592063676884803 0.845905526397982 0.10089421 0.5935543 prediction 0.507683699026358 Functional Gain - NUPL2 ENSG00000136243 CDS Human protein_coding chr7:23221734 chr7:23221735 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107581 0 0 1 0 1 Cytosol 0.500088936679186 0.500231586419218 0.1871086 0.000285299480064394 hm5C_site_60726 DeepMRMD:0.1871086;iRNA_m5C:0.000285299480064394 60727 chr16 90033255 90033255 1 + C G rs4303487 90033254 + 90033234 90033274 41 ATTTCTTGGAACCAGATTTACCTGAGGAGCTCTGTCCTGCT ATTTCTTGGAACCAGATTTACGTGAGGAGCTCTGTCCTGCT < 41bp 0.563085362845207 0.816917470420085 0.41599628 0.6848232 prediction 0.507664215149756 Functional Gain - DEF8 ENSG00000140995 UTR3 Human protein_coding chr16:90033254 chr16:90033255 . . 0 22 hm5C_associated_SNPs_107582 0 0 1 0 0 Ribosome 0.500231643924517 0.500231643921096 0.3696464 0 hm5C_site_60727 DeepMRMD:0.3696464;iRNA_m5C:0 60728 chr20 2730134 2730134 1 + C A LIHC 2730133 + 2730113 2730153 41 CACAACAACTCCAAGCATGGCCGCAGGGCGCGCCGCCTGGA CACAACAACTCCAAGCATGGCAGCAGGGCGCGCCGCCTGGA < 41bp 0.511395065573708 0.765220883666169 0.060181856 0.1137647 prediction 0.507651636184921 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2730133 chr20:2730134 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_107583 0 0 0 0 2 exosome 0.500231643921054 0.500231643895015 0 0 hm5C_site_60728 DeepMRMD:0;iRNA_m5C:0 60729 chr1 97235320 97235320 1 + T C LIHC 97235318 + 97235298 97235338 41 AAATGGATGGTGCTCCTTCTCGTGTACTTCATATTCGAAAA AAATGGATGGTGCTCCTTCTCGCGTACTTCATATTCGAAAA < 41bp 0.518320837025518 0.772139509269438 0.19648379 0.1408425 prediction 0.507637344487839 Functional Gain - PTBP2 ENSG00000117569 CDS Human protein_coding chr1:97235318 chr1:97235320 synonymous SNV . 0 23 hm5C_associated_SNPs_107584 0 0 1 0 1 Cytosol 0.500231643921089 0.500231643921092 0 7.54951656745106e-15 hm5C_site_60729 DeepMRMD:0;iRNA_m5C:7.54951656745106e-15 60730 chr11 6221336 6221336 1 + C A LUSC 6221332 + 6221312 6221352 41 TTGCTGCTGCCACCTGCCCTCAACCCCCTCATCTATGGGGC TTGCTGCTGCCACCTGCCCTCAACACCCTCATCTATGGGGC < 41bp 0.366026012079024 0.753813478242717 0.053583622 0.046692103 prediction 0.507626956485434 Functional Gain - OR52W1 ENSG00000175485 CDS Human protein_coding chr11:6221332 chr11:6221336 nonsynonymous SNV 0.985 1 25 hm5C_associated_SNPs_107585 0 0 0 0 0 unknown 0.500231643925181 0.500231643921119 0 0 hm5C_site_60730 DeepMRMD:0;iRNA_m5C:0 60731 chr7 55468954 55468954 1 + C T LUAD 55468953 + 55468933 55468973 41 CCGCTGTTGTACCAGTGGCACCGGAAGCAGTACGTTGGAGC CCGCTGTTGTACCAGTGGCACTGGAAGCAGTACGTTGGAGC < 41bp 0.502654144913202 0.756461183982283 0.2949046 0.26425707 prediction 0.507614078138163 Functional Gain - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55468953 chr7:55468954 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107586 0 0 1 0 2 Ribosome 0.500245638031255 0.500242240425022 0 0 hm5C_site_60731 DeepMRMD:0;iRNA_m5C:0 60732 chr5 156887389 156887389 1 + C G rs180845128 156887388 + 156887368 156887408 41 GCGTACGGCAGGGCTGGGGACCAGGCGGGCTCCGCGCTTCG GCGTACGGCAGGGCTGGGGACGAGGCGGGCTCCGCGCTTCG < 41bp 0.586854945046184 0.840653615615029 0.8839344 0.9115302 prediction 0.507597341137689 Functional Gain - NIPAL4 ENSG00000135074;ENSG00000172548 intronic Human other chr5:156887388 chr5:156887389 . . 0 22 hm5C_associated_SNPs_107587 0 0 0 0 0 exosome 0.500231616598536 0.500231643921135 0.0551915999999999 5.46451983662877e-08 hm5C_site_60732 DeepMRMD:0.0551915999999999;iRNA_m5C:5.46451983662877e-08 60733 chr6 35285722 35285722 1 + C T STAD 35285721 + 35285701 35285741 41 TTCTGTGTGAAGACAGCCAACCGCACGTATGAGATGAGCGC TTCTGTGTGAAGACAGCCAACTGCACGTATGAGATGAGCGC < 41bp 0.495897937053797 0.753795640302223 0.018645972 0.07771841 prediction 0.507591280604446 Functional Gain - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35285721 chr6:35285722 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_107588 0 0 0 0 2 Ribosome 0.500231643920991 0.500231642213274 0 0 hm5C_site_60733 DeepMRMD:0;iRNA_m5C:0 60734 chr8 134225321 134225321 1 + C T KIRP 134225320 + 134225300 134225340 41 CGGAGGCTGCCATCTGTGACCCCCACCGGGGCCTCTACTGT CGGAGGCTGCCATCTGTGACCTCCACCGGGGCCTCTACTGT < 41bp 0.514460291155748 0.768242419003676 0.009201229 0.9287699 prediction 0.507564255695858 Functional Gain - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134225320 chr8:134225321 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_107589 0 0 0 0 2 nucleus 0.500231643921059 0.500231643921089 0.8575398 6.10622663543836e-14 hm5C_site_60734 DeepMRMD:0.8575398;iRNA_m5C:6.10622663543836e-14 60735 chr3 52514271 52514271 1 + C T rs71297399 52514270 + 52514250 52514290 41 CTCCCCTCCCACTGTGGCTCCCGCATCTGCCTCCCTGCCCC CTCCCCTCCCACTGTGGCTCCTGCATCTGCCTCCCTGCCCC < 41bp 0.488523359062773 0.753781786757212 0.06619036 0.10210419 prediction 0.507563573514423 Functional Gain - NISCH ENSG00000010322 CDS Human protein_coding chr3:52514270 chr3:52514271 synonymous SNV . 0 22 hm5C_associated_SNPs_107590 0 0 1 0 1 Cytosol 0.500231652834095 0.500231643925243 0 0 hm5C_site_60735 DeepMRMD:0;iRNA_m5C:0 60736 chr12 122691733 122691733 1 + T C SKCM 122691731 + 122691711 122691751 41 GATGTCTTTGTGGGTATGTGCCTGAGGCGGCTGGGGCTGAG GATGTCTTTGTGGGTATGTGCCCGAGGCGGCTGGGGCTGAG < 41bp 0.529839267478397 0.783616009965751 0.342691 0.47953436 prediction 0.507553484974709 Functional Gain - B3GNT4 ENSG00000176383 CDS Human protein_coding chr12:122691731 chr12:122691733 nonsynonymous SNV 0.948 4 23 hm5C_associated_SNPs_107591 0 0 0 0 0 chromatin 0.500231643921091 0.500231643921092 0 3.5527136788005e-15 hm5C_site_60736 DeepMRMD:0;iRNA_m5C:3.5527136788005e-15 60737 chr5 81268070 81268070 1 + C G rs111549985 81268069 + 81268049 81268089 41 CCAGCTCTCCTCCCCCTGGCCCCGTCGCCCCGCCCTCGCCG CCAGCTCTCCTCCCCCTGGCCGCGTCGCCCCGCCCTCGCCG < 41bp 0.491234724334391 0.753769496505105 0.24226618 0.24028146 prediction 0.507538993010211 Functional Gain - ATG10 ENSG00000152348 UTR5 Human protein_coding chr5:81268069 chr5:81268070 . . 0 22 hm5C_associated_SNPs_107592 0 1 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_60737 DeepMRMD:0;iRNA_m5C:0 60738 chr3 183955109 183955109 1 + C T rs843334 183955108 + 183955088 183955128 41 TGTGGAGGCACTGCTGACCCCCCGGGAGATCCCAGCACTCT TGTGGAGGCACTGCTGACCCCTCGGGAGATCCCAGCACTCT < 41bp 0.505648607537603 0.759407096787393 0.18504882 0.09701982 prediction 0.50751697849958 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183955108 chr3:183955109 synonymous SNV . 0 22 hm5C_associated_SNPs_107593 0 0 0 0 2 exosome 0.500231643935851 0.500231674880535 0 6.18893678527854e-08 hm5C_site_60738 DeepMRMD:0;iRNA_m5C:6.18893678527854e-08 60739 chr3 196387637 196387637 1 + C A LIHC 196387636 + 196387616 196387656 41 CACATTCGGGAGCACGAGCCCCCCGGAGCGCTCACCGAGCT CACATTCGGGAGCACGAGCCCACCGGAGCGCTCACCGAGCT < 41bp 0.496762138980312 0.75375713645165 0.19350547 0.31343627 prediction 0.507514272903301 Functional Gain - NRROS ENSG00000174004 CDS Human protein_coding chr3:196387636 chr3:196387637 nonsynonymous SNV 0.123 0 22 hm5C_associated_SNPs_107594 0 0 0 0 0 chromatin 0.500231643921093 0.500231663062079 0 3.82819738131701e-08 hm5C_site_60739 DeepMRMD:0;iRNA_m5C:3.82819738131701e-08 60740 chr19 36727458 36727458 1 + C G LUSC 36727454 + 36727434 36727474 41 TCACTGAGCATGAGCATTTTCACACGAGAGAGAAACCTTTT TCACTGAGCATGAGCATTTTCACAGGAGAGAGAAACCTTTT < 41bp 0.555490754062872 0.809244336499233 0.1676876 0.15382174 prediction 0.507507164872723 Functional Gain - ZNF146 ENSG00000167635 CDS Human protein_coding chr19:36727454 chr19:36727458 nonsynonymous SNV 0.970 1 25 hm5C_associated_SNPs_107595 0 0 1 0 0 Ribosome 0.50023170094505 0.500231644349993 0 0 hm5C_site_60740 DeepMRMD:0;iRNA_m5C:0 60741 chr1 152692020 152692020 1 + C A UCEC 152692016 + 152691996 152692036 41 CAATGTGTGACCAGCAGAAGCAGCCACAGTTCCCTCCATCT CAATGTGTGACCAGCAGAAGCAGCAACAGTTCCCTCCATCT < 41bp 0.366767321772024 0.753746625820792 0.05293435 0.029126108 prediction 0.507493251641583 Functional Gain - C1orf68 ENSG00000198854 CDS Human protein_coding chr1:152692016 chr1:152692020 nonsynonymous SNV 0.997 0 25 hm5C_associated_SNPs_107596 0 0 0 0 0 exosome 0.500231643921092 0.500231643778963 0 0 hm5C_site_60741 DeepMRMD:0;iRNA_m5C:0 60742 chrX 37665661 37665661 1 + C A LUAD 37665660 + 37665640 37665680 41 ATCTACTTCTACTGGCTGTGCCGGGACACACATGCCTTTGA ATCTACTTCTACTGGCTGTGCAGGGACACACATGCCTTTGA < 41bp 0.500209973956306 0.753945728763951 0.56391966 0.8742832 prediction 0.507471509615291 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37665660 chrX:37665661 synonymous SNV . 0 22 hm5C_associated_SNPs_107597 0 0 0 0 1 Endoplasmic reticulum 0.500231609738205 0.5001895882232 0.62072708 0 hm5C_site_60742 DeepMRMD:0.62072708;iRNA_m5C:0 60743 chr5 161128647 161128647 1 + C A GBM 161128643 + 161128623 161128663 41 CACACCCCCACCACTCTCGCCAGCCTTTGGAGGCACCAGTA CACACCCCCACCACTCTCGCCAGCATTTGGAGGCACCAGTA < 41bp 0.347992741309552 0.753725775033836 0.18811038 0.27431318 prediction 0.507451550067672 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161128643 chr5:161128647 synonymous SNV . 0 25 hm5C_associated_SNPs_107598 0 0 0 0 0 unknown 0.500231643921092 0.500231643920924 0 0 hm5C_site_60743 DeepMRMD:0;iRNA_m5C:0 60744 chr9 90501448 90501448 1 + C A rs4076795 90501444 + 90501424 90501464 41 CCTCTTGCCCTCCCAGCCTTCTGACTTTGCAGGGAAGGGCA CCTCTTGCCCTCCCAGCCTTCTGAATTTGCAGGGAAGGGCA < 41bp 0.348104774808724 0.753711787141562 0.21029022 0.23276174 prediction 0.507423574283125 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90501444 chr9:90501448 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_107599 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_60744 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 60745 chr4 38869387 38869387 1 + C G rs543856924 38869386 + 38869366 38869406 41 CCCGCCCTCCGGCCGCGTCCCCGCCGGCCCTGCAGACGTGG CCCGCCCTCCGGCCGCGTCCCGGCCGGCCCTGCAGACGTGG < 41bp 0.573608965203361 0.827310750413752 0.5100152 0.8629746 prediction 0.507403570420784 Functional Gain - FAM114A1 ENSG00000197712 UTR5 Human protein_coding chr4:38869386 chr4:38869387 . . 0 22 hm5C_associated_SNPs_107600 0 0 0 0 1 Cytosol 0.500231643906932 0.500231643750432 0.7059188 0 hm5C_site_60745 DeepMRMD:0.7059188;iRNA_m5C:0 60746 chr11 3819156 3819156 1 + C G UCEC 3819155 + 3819135 3819175 41 CCGCCCCCTTCCTTGGAGCGCCGCGACTCGGGCTGAGGGAG CCGCCCCCTTCCTTGGAGCGCGGCGACTCGGGCTGAGGGAG < 41bp 0.473687455613969 0.75369901128827 0.68810594 0.92666346 prediction 0.50739802257654 Functional Gain - PGAP2 ENSG00000148985 CDS Human protein_coding chr11:3819155 chr11:3819156 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_107601 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.47711504 0 hm5C_site_60746 DeepMRMD:0.47711504;iRNA_m5C:0 60747 chr18 47101752 47101752 1 + C G SKCM 47101751 + 47101731 47101771 41 TGCTGCAGGTTTGGATCCTGCCGGGCCCATGTTTGAAGGGG TGCTGCAGGTTTGGATCCTGCGGGGCCCATGTTTGAAGGGG < 41bp 0.606820589801748 0.860519135944865 0.31751668 0.8795395 prediction 0.507397092286234 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47101751 chr18:47101752 synonymous SNV . 0 22 hm5C_associated_SNPs_107602 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0.759079 0 hm5C_site_60747 DeepMRMD:0.759079;iRNA_m5C:0 60748 chr10 112838248 112838248 1 + T C UCEC 112838246 + 112838226 112838266 41 CTGAAGCGCACGCCGCGCCGCATCAAGGCCATCATCATCAC CTGAAGCGCACGCCGCGCCGCACCAAGGCCATCATCATCAC < 41bp 0.516534952791985 0.770224344070148 0.031535685 0.009139687 prediction 0.507378782556327 Functional Gain - ADRA2A ENSG00000150594 CDS Human protein_coding chr10:112838246 chr10:112838248 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_107603 0 0 0 0 0 exosome 0.500235576742059 0.500284024517951 0 9.68955517846037e-05 hm5C_site_60748 DeepMRMD:0;iRNA_m5C:9.68955517846037e-05 60749 chr1 18808885 18808885 1 + C G LUSC 18808881 + 18808861 18808901 41 CCTGCAGGTGCTGCGCAGCCCGGACATCTACGGGTGCCTGA CCTGCAGGTGCTGCGCAGCCCGGAGATCTACGGGTGCCTGA < 41bp 0.568877298252123 0.822560200477031 0.4763092 0.8877816 prediction 0.507365804449815 Functional Gain - KLHDC7A ENSG00000179023 CDS Human protein_coding chr1:18808881 chr1:18808885 nonsynonymous SNV 0.865 0 25 hm5C_associated_SNPs_107604 0 0 0 0 0 Cytosol 0.500231656856805 0.500231643921075 0.7755632 0 hm5C_site_60749 DeepMRMD:0.7755632;iRNA_m5C:0 60750 chr16 2134519 2134519 1 + C G KIRC 2134515 + 2134495 2134535 41 CGGGGAAAGTGCTGCCTGGTCGGCCTCGGGCGAAGACAGTC CGGGGAAAGTGCTGCCTGGTCGGCGTCGGGCGAAGACAGTC < 41bp 0.579696375124526 0.833358782174164 0.29294127 0.88961875 prediction 0.507324814099275 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2134515 chr16:2134519 synonymous SNV . 0 25 hm5C_associated_SNPs_107605 0 0 1 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921068 0.7792375 0 hm5C_site_60750 DeepMRMD:0.7792375;iRNA_m5C:0 60751 chrX 150907049 150907049 1 + C A LUAD 150907048 + 150907028 150907068 41 AAGGCCAATGGCAAAGATGACCACAGGACAAGCAGCAGGTG AAGGCCAATGGCAAAGATGACAACAGGACAAGCAGCAGGTG < 41bp 0.526439533855964 0.780092872747992 0.020691544 0.01703155 prediction 0.507306677784057 Functional Gain - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150907048 chrX:150907049 nonsynonymous SNV 0.769 1 22 hm5C_associated_SNPs_107606 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_60751 DeepMRMD:0;iRNA_m5C:0 60752 chr12 109522791 109522791 1 + T A SARC 109522787 + 109522767 109522807 41 AGCCAGGGGCCCCCAAAACACAGATTTTTATGAATGGCGCC AGCCAGGGGCCCCCAAAACACAGAATTTTATGAATGGCGCC < 41bp 0.605988301550073 0.859633535913353 0.4962529 0.32666934 prediction 0.50729046872656 Functional Gain - USP30 ENSG00000135093 CDS Human protein_coding chr12:109522787 chr12:109522791 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_107607 0 0 1 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_60752 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 60753 chr2 219269089 219269089 1 + C G rs199987970 219269085 + 219269065 219269105 41 CACGACCTCCTCCCCTTCTTCGAGCAACTCAGCCGTGTGGA CACGACCTCCTCCCCTTCTTCGAGGAACTCAGCCGTGTGGA < 41bp 0.470690628105462 0.753637847318907 0.8633382 0.9285774 prediction 0.507275694637814 Functional Gain - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219269085 chr2:219269089 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_107608 0 0 1 0 1 Cytosol 0.500231643920721 0.500231643770249 0.1304784 0 hm5C_site_60753 DeepMRMD:0.1304784;iRNA_m5C:0 60754 chr11 130586121 130586121 1 + T G rs112789600 130586119 + 130586099 130586139 41 AATTAGCAGTCTCTGCCTCCCTTGGAAACAAGAGTGGATAT AATTAGCAGTCTCTGCCTCCCTGGGAAACAAGAGTGGATAT < 41bp 0.474866413058974 0.753629899239266 0.03278923 0.1976136 prediction 0.507259798478531 Functional Gain - C11orf44 ENSG00000175728 UTR3 Human lincRNA chr11:130586119 chr11:130586121 . . 0 23 hm5C_associated_SNPs_107609 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 1.77635683940025e-15 hm5C_site_60754 DeepMRMD:0;iRNA_m5C:1.77635683940025e-15 60755 chr9 117038046 117038046 1 + C G rs143724625 117038045 + 117038025 117038065 41 CCCCCTGGCGTCACTGGTGTCCGGGTGAGTGTGCAGGCCCC CCCCCTGGCGTCACTGGTGTCGGGGTGAGTGTGCAGGCCCC < 41bp 0.574049636597618 0.827679166766675 0.90967417 0.9309793 prediction 0.507259060338112 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117038045 chr9:117038046 nonsynonymous SNV 0.989 0 22 hm5C_associated_SNPs_107610 0 0 1 0 1 Nucleus 0.500231556874582 0.500231643920515 0.04261026 1.74091867144455e-07 hm5C_site_60755 DeepMRMD:0.04261026;iRNA_m5C:1.74091867144455e-07 60756 chr5 131705431 131705431 1 + C G rs4646300 131705427 + 131705407 131705447 41 CGCCGGCGCCGCTCTGCCTGCCAGCGGGGCGCGCCTTGCGG CGCCGGCGCCGCTCTGCCTGCCAGGGGGGCGCGCCTTGCGG < 41bp 0.550978503028482 0.804599823541242 0.5036794 0.9153773 prediction 0.50724264102552 Functional Gain - MIR3936HG ENSG00000233006 ncRNA_intronic Human processed_transcript chr5:131705427 chr5:131705431 . . 0 25 hm5C_associated_SNPs_107611 0 0 0 0 0 unknown 0.500231641492925 0.50023266044874 0.8233958 2.03791163055911e-06 hm5C_site_60756 DeepMRMD:0.8233958;iRNA_m5C:2.03791163055911e-06 60757 chr9 37503332 37503332 1 + T G rs187119512 37503329 + 37503309 37503349 41 TCACACCTGAAATCCCAGCACTTTGGGAGGCCGAGGCAGGA TCACACCTGAAATCCCAGCACTTGGGGAGGCCGAGGCAGGA < 41bp 0.373877130915026 0.753615051161656 0.7626559 0.7518164 prediction 0.507230102323311 Functional Gain - POLR1E ENSG00000137054 UTR3 Human protein_coding chr9:37503329 chr9:37503332 . . 0 24 hm5C_associated_SNPs_107612 0 0 1 0 0 Ribosome 0.500231660632203 0.50023121128724 0 0 hm5C_site_60757 DeepMRMD:0;iRNA_m5C:0 60758 chr12 121670288 121670288 1 + T G UCEC 121670286 + 121670266 121670306 41 ATCAAGGCCTATGGCATCCGCTTCGACATCATTGTGTTTGG ATCAAGGCCTATGGCATCCGCTGCGACATCATTGTGTTTGG < 41bp 0.410072383498034 0.753614297920352 0.13249889 0.1139299 prediction 0.507228595840705 Functional Gain - P2RX4 ENSG00000135124 CDS Human protein_coding chr12:121670286 chr12:121670288 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107613 0 0 0 0 2 Endoplasmic reticulum 0.500231643921093 0.500231643919007 0 0 hm5C_site_60758 DeepMRMD:0;iRNA_m5C:0 60759 chr22 44581720 44581720 1 + C T GBM 44581719 + 44581699 44581739 41 AAATACCTGCCACCCACTTCCCGGAAGGACCCCAAATTTGA AAATACCTGCCACCCACTTCCTGGAAGGACCCCAAATTTGA < 41bp 0.51182718110474 0.765439905436202 0.24511275 0.113740385 prediction 0.507225448662925 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44581719 chr22:44581720 nonsynonymous SNV 0.416 2 22 hm5C_associated_SNPs_107614 0 0 0 0 2 exosome 0.500231647075726 0.500231644322913 0 0 hm5C_site_60759 DeepMRMD:0;iRNA_m5C:0 60760 chr9 138395863 138395863 1 + C G LGG 138395859 + 138395839 138395879 41 AGGCTCTTCCAGACGGCCATCACCCGGGCCAAGGAGAAGCG AGGCTCTTCCAGACGGCCATCACCGGGGCCAAGGAGAAGCG < 41bp 0.547011818544271 0.800623643539576 0.25778574 0.40825623 prediction 0.507223649990609 Functional Gain - MRPS2 ENSG00000122140 CDS Human protein_coding chr9:138395859 chr9:138395863 nonsynonymous SNV 0.193 4 25 hm5C_associated_SNPs_107615 0 0 1 0 0 Cytosol 0.500231643921124 0.5002316439403 0 3.83515441626514e-11 hm5C_site_60760 DeepMRMD:0;iRNA_m5C:3.83515441626514e-11 60761 chr19 53856300 53856300 1 + C A KICH 53856296 + 53856276 53856316 41 CTTTTGGGCGTGATTCACACCTGGCACAACATACTAGAATT CTTTTGGGCGTGATTCACACCTGGAACAACATACTAGAATT < 41bp 0.364741453992405 0.753609508822834 0.0041690767 0.019431978 prediction 0.507219017645667 Functional Gain - ZNF845 ENSG00000213799 CDS Human protein_coding chr19:53856296 chr19:53856300 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_107616 0 0 0 0 0 chromatin 0.500234702409711 0.50023168325415 0 0 hm5C_site_60761 DeepMRMD:0;iRNA_m5C:0 60762 chr1 26527516 26527516 1 + C G BLCA 26527515 + 26527495 26527535 41 CTGAGGCAGTACAAGGAGATCCGAGATGAACTCAACATGTA CTGAGGCAGTACAAGGAGATCGGAGATGAACTCAACATGTA < 41bp 0.437398304341438 0.753607064304563 0.5083029 0.83118623 prediction 0.507214128609127 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26527515 chr1:26527516 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_107617 0 0 0 0 2 exosome 0.500231643849256 0.500231643921092 0.64576666 1.43673295482927e-10 hm5C_site_60762 DeepMRMD:0.64576666;iRNA_m5C:1.43673295482927e-10 60763 chr1 248263495 248263495 1 + T G rs74153072 248263493 + 248263473 248263513 41 TCACCAGCTGAAGACAAGATCCTGGCAGTCTTCTACACCAT TCACCAGCTGAAGACAAGATCCGGGCAGTCTTCTACACCAT < 41bp 0.408811019064177 0.753606671895694 0.099395305 0.30509928 prediction 0.507213343791388 Functional Gain - OR2L13 ENSG00000196071 CDS Human protein_coding chr1:248263493 chr1:248263495 nonsynonymous SNV 0.602 3 23 hm5C_associated_SNPs_107618 0 0 0 0 0 Nucleus 0.500220464145949 0.500275686588946 0 0.000110444885994765 hm5C_site_60763 DeepMRMD:0;iRNA_m5C:0.000110444885994765 Multiple complex diseases 60764 chr20 35507522 35507522 1 + C A CESC 35507521 + 35507501 35507541 41 ACGTCAAGGGACGGTTTCAGCCTGCAGAGCCTGTACCGGCG ACGTCAAGGGACGGTTTCAGCATGCAGAGCCTGTACCGGCG < 41bp 0.501642759947067 0.755246676063806 0.14085749 0.2210128 prediction 0.507207832233479 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35507521 chr20:35507522 nonsynonymous SNV 0.968 4 22 hm5C_associated_SNPs_107619 0 0 0 0 2 membrane 0.500231643913306 0.500231643936387 0 4.61626292747042e-11 hm5C_site_60764 DeepMRMD:0;iRNA_m5C:4.61626292747042e-11 60765 chr2 27730568 27730568 1 + C T HNSC 27730567 + 27730547 27730587 41 GGGTCCCCAGTTCACCTTCTCCCAGGAGGACTTCCTGACTT GGGTCCCCAGTTCACCTTCTCTCAGGAGGACTTCCTGACTT < 41bp 0.500122532879803 0.753721802299318 0.10562989 0.04501432 prediction 0.50719853883903 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27730567 chr2:27730568 synonymous SNV . 0 22 hm5C_associated_SNPs_107620 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921095 0 5.32907051820075e-15 hm5C_site_60765 DeepMRMD:0;iRNA_m5C:5.32907051820075e-15 60766 chr13 48807588 48807588 1 + C A rs150336652 48807584 + 48807564 48807604 41 GCGAGGAGGCGCTCATCATCCCCCCCGACGCCGTCGCGGTG GCGAGGAGGCGCTCATCATCCCCCACGACGCCGTCGCGGTG < 41bp 0.665025569699507 0.918618028072081 0.063584715 0.05923882 prediction 0.507184916745148 Functional Gain - ITM2B ENSG00000136156 CDS Human protein_coding chr13:48807584 chr13:48807588 nonsynonymous SNV 0.975 0 25 hm5C_associated_SNPs_107621 0 0 1 0 1 Ribosome 0.500291496931255 0.500231643226007 0 0 hm5C_site_60766 DeepMRMD:0;iRNA_m5C:0 60767 chr4 951970 951970 1 + C G LUSC 951969 + 951949 951989 41 TGGACCACGGCGCTGCTGCACCAGGCGGAGACGCTGCAGCC TGGACCACGGCGCTGCTGCACGAGGCGGAGACGCTGCAGCC < 41bp 0.597759089227463 0.851346300475919 0.8707173 0.89279854 prediction 0.507174422496911 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:951969 chr4:951970 nonsynonymous SNV 0.005 0 22 hm5C_associated_SNPs_107622 0 0 0 0 0 chromatin 0.500231643922571 0.500231643921093 0.04416248 0 hm5C_site_60767 DeepMRMD:0.04416248;iRNA_m5C:0 Response to platinum-based chemotherapy (carboplatin) 60768 chr3 49042542 49042542 1 + C G UCEC 49042538 + 49042518 49042558 41 GACCAGGAACACCCATGACACAGGCACAGCCCTGCACTGTG GACCAGGAACACCCATGACACAGGGACAGCCCTGCACTGTG < 41bp 0.583744652289587 0.837331351306254 0.27042687 0.8966975 prediction 0.507173398033334 Functional Gain - P4HTM ENSG00000178467 CDS Human protein_coding chr3:49042538 chr3:49042542 nonsynonymous SNV 0.001 0 25 hm5C_associated_SNPs_107623 0 0 0 0 1 Ribosome 0.500231644087377 0.500231644157642 0.793395 1.40530920234028e-10 hm5C_site_60768 DeepMRMD:0.793395;iRNA_m5C:1.40530920234028e-10 60769 chr3 47374728 47374728 1 + C T LAML 47374727 + 47374707 47374747 41 CCTGAGCTGCTGTCCAATATCCGCCTGCCCCTCTGTCGGCC CCTGAGCTGCTGTCCAATATCTGCCTGCCCCTCTGTCGGCC < 41bp 0.520315887543769 0.773901976656938 0.5003243 0.19679826 prediction 0.507172178226337 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374727 chr3:47374728 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107624 0 0 1 0 2 Cytosol 0.500234743939749 0.500231890289643 0 0 hm5C_site_60769 DeepMRMD:0;iRNA_m5C:0 60770 chr14 75200809 75200809 1 + C A SKCM 75200808 + 75200788 75200828 41 TACATTGTGGCCACAGTTGACCGGGACCTGAAAAGAAGAAT TACATTGTGGCCACAGTTGACAGGGACCTGAAAAGAAGAAT < 41bp 0.500139515092059 0.753720843724056 0.42958438 0.780097 prediction 0.507162657263995 Functional Gain - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75200808 chr14:75200809 synonymous SNV . 0 22 hm5C_associated_SNPs_107625 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0.560194 0 hm5C_site_60770 DeepMRMD:0.560194;iRNA_m5C:0 Psoriasis 60771 chr5 157181082 157181082 1 + T G PRAD 157181079 + 157181059 157181099 41 AGCATATGAACGGGATTCTTCACTGACTCTCACTAGGGTAG AGCATATGAACGGGATTCTTCACGGACTCTCACTAGGGTAG < 41bp 0.354963210016323 0.753576471196267 0.10095003 0.42616907 prediction 0.507152942392534 Functional Gain - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157181079 chr5:157181082 nonsynonymous SNV 0.996 4 24 hm5C_associated_SNPs_107626 0 0 1 0 1 Ribosome 0.500231644008666 0.500231655831408 0 2.36454835711442e-08 hm5C_site_60771 DeepMRMD:0;iRNA_m5C:2.36454835711442e-08 60772 chr1 160385688 160385688 1 + C T LGG 160385687 + 160385667 160385707 41 TCGGGCCACTCCCGCAGCTCCCGCAAGCACAGGTGGGCAGG TCGGGCCACTCCCGCAGCTCCTGCAAGCACAGGTGGGCAGG < 41bp 0.504002136805695 0.75757815598346 0.41458008 0.54363495 prediction 0.507152038355529 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385687 chr1:160385688 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_107627 0 0 0 0 1 exosome 0.500231643424798 0.50023163927908 0.0872698999999999 0 hm5C_site_60772 DeepMRMD:0.0872698999999999;iRNA_m5C:0 60773 chr11 82880514 82880514 1 + C G LUSC 82880510 + 82880490 82880530 41 GGTTTGATGGGCAGCCAGGTCAGCCGTCACTCTTGCCAAGA GGTTTGATGGGCAGCCAGGTCAGCGGTCACTCTTGCCAAGA < 41bp 0.552373310396908 0.805949206374527 0.5815646 0.813173 prediction 0.507151791955238 Functional Gain - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82880510 chr11:82880514 nonsynonymous SNV 0.997 1 25 hm5C_associated_SNPs_107628 0 0 1 0 0 Nucleus 0.500231643826728 0.500231622824983 0.4632168 0 hm5C_site_60773 DeepMRMD:0.4632168;iRNA_m5C:0 60774 chr12 9997275 9997275 1 + C G rs7980232 9997271 + 9997251 9997291 41 CCTCCATCATCGACACTGGTCTAGCCTCAGAGTAACCCCTG CCTCCATCATCGACACTGGTCTAGGCTCAGAGTAACCCCTG < 41bp 0.509114098862239 0.762688554573216 0.048438787 0.14453426 prediction 0.507148911421953 Functional Gain - KLRF1 ENSG00000150045 UTR3 Human protein_coding chr12:9997271 chr12:9997275 . . 0 25 hm5C_associated_SNPs_107629 0 0 0 0 0 exosome 0.500231643875025 0.500231631705452 0 0 hm5C_site_60774 DeepMRMD:0;iRNA_m5C:0 60775 chr1 84878181 84878181 1 + C A LUAD 84878180 + 84878160 84878200 41 CTCACCACACTTCAGTCGGCCCAGGGACAAAAATTCCTCCA CTCACCACACTTCAGTCGGCCAAGGGACAAAAATTCCTCCA < 41bp 0.516073680870771 0.769648036023985 0.3025722 0.31477052 prediction 0.507148710306428 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84878180 chr1:84878181 nonsynonymous SNV 0.937 0 22 hm5C_associated_SNPs_107630 0 0 0 0 1 exosome 0.500231644068945 0.500231645978747 0 3.81960374440382e-09 hm5C_site_60775 DeepMRMD:0;iRNA_m5C:3.81960374440382e-09 60776 chr11 4661190 4661190 1 + C G rs138224979 4661186 + 4661166 4661206 41 CCTTGGCCACCCTGGGTAACCTGACCATTGTCCTCATCATT CCTTGGCCACCCTGGGTAACCTGAGCATTGTCCTCATCATT < 41bp 0.45861091661216 0.753558281759141 0.15531841 0.32553118 prediction 0.507116563518282 Functional Gain - OR51D1 ENSG00000197428 CDS Human protein_coding chr11:4661186 chr11:4661190 nonsynonymous SNV 0.777 0 25 hm5C_associated_SNPs_107631 0 0 0 0 0 unknown 0.500230937991422 0.500231654298414 0 1.43261398388717e-06 hm5C_site_60776 DeepMRMD:0;iRNA_m5C:1.43261398388717e-06 60777 chr6 74104701 74104701 1 + C G rs199696558 74104700 + 74104680 74104720 41 CGGCGAAGCTCGACAGTGTCCCGAGCGCCAGAGAGGAGGCC CGGCGAAGCTCGACAGTGTCCGGAGCGCCAGAGAGGAGGCC < 41bp 0.596561313461165 0.850114363685863 0.17960614 0.6262878 prediction 0.507106100449395 Functional Gain - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74104700 chr6:74104701 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_107632 0 0 0 0 0 exosome 0.500231643923334 0.500231643921364 0.2525756 0 hm5C_site_60777 DeepMRMD:0.2525756;iRNA_m5C:0 60778 chr1 26607289 26607289 1 + C A PAAD 26607288 + 26607268 26607308 41 CAGAGCGAGGTGACCCGAATCCTGGATGGGAAGCGCATCCA CAGAGCGAGGTGACCCGAATCATGGATGGGAAGCGCATCCA < 41bp 0.498554547545853 0.753548566641759 0.3417177 0.65394497 prediction 0.507097133283518 Functional Gain - SH3BGRL3 ENSG00000142669 CDS Human protein_coding chr1:26607288 chr1:26607289 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_107633 0 0 1 0 1 Ribosome 0.500231644520245 0.500234470941689 0.30788994 5.65284288844836e-06 hm5C_site_60778 DeepMRMD:0.30788994;iRNA_m5C:5.65284288844836e-06 60779 chr18 61602471 61602471 1 + C A GBM 61602467 + 61602447 61602487 41 CTTTTTTATGGAAGATTATGCTCCCCCTAAATCCTGCATAT CTTTTTTATGGAAGATTATGCTCCACCTAAATCCTGCATAT < 41bp 0.363333565746014 0.753548001325132 0.02908647 0.033785194 prediction 0.507096002650265 Functional Gain - SERPINB10 ENSG00000242550 CDS Human protein_coding chr18:61602467 chr18:61602471 nonsynonymous SNV 0.920 5 25 hm5C_associated_SNPs_107634 0 0 0 0 0 exosome 0.500231643921094 0.500231646685937 0 5.52968670852749e-09 hm5C_site_60779 DeepMRMD:0;iRNA_m5C:5.52968670852749e-09 60780 chr11 64358491 64358491 1 + C G rs562384398 64358487 + 64358467 64358507 41 CACAGGGGCACCGAAGGGAGCAGGCAGCCCTGGCATCCCAC CACAGGGGCACCGAAGGGAGCAGGGAGCCCTGGCATCCCAC < 41bp 0.5699764269364 0.823510023732285 0.90755564 0.932006 prediction 0.507067193591769 Functional Gain - SLC22A12 ENSG00000197891 UTR5 Human protein_coding chr11:64358487 chr11:64358491 . . 0 25 hm5C_associated_SNPs_107635 0 0 0 0 0 unknown 0.500231643921079 0.500231643920738 0.04890072 0 hm5C_site_60780 DeepMRMD:0.04890072;iRNA_m5C:0 60781 chr1 11333542 11333542 1 + T G rs72856992 11333539 + 11333519 11333559 41 CTTCCTCCTTCCCGGGCGGTCACTGTGCGTGGCTCACTTTT CTTCCTCCTTCCCGGGCGGTCACGGTGCGTGGCTCACTTTT < 41bp 0.466556930912652 0.753530768488815 0.10683814 0.6845044 prediction 0.507061536977631 Functional Gain - UBIAD1 ENSG00000120942 UTR5 Human protein_coding chr1:11333539 chr1:11333542 . . 0 24 hm5C_associated_SNPs_107636 1 0 1 0 0 Endoplasmic reticulum 0.500231643910856 0.500231636633244 0.3690088 0 hm5C_site_60781 DeepMRMD:0.3690088;iRNA_m5C:0 Schnyder crystalline corneal dystrophy Schnyder crystalline corneal dystrophy 60782 chr16 732411 732411 1 + A C GBM 732414 - 732394 732434 41 ATAGCCAAGTTGGGGATGAGCTGTTCCTGGGTCAGGGGGCT ATAGCCAAGTTGGGGATGAGCTGGTCCTGGGTCAGGGGGCT < 41bp 0.364777565391735 0.753529070350536 0.3166505 0.34620184 prediction 0.507058140701071 Functional Gain - STUB1 ENSG00000103266 CDS Human protein_coding chr16:732414 chr16:732411 nonsynonymous SNV 0.991 1 24 hm5C_associated_SNPs_107637 0 0 1 1 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_60782 DeepMRMD:0;iRNA_m5C:0 60783 chr19 58967037 58967037 1 + C A UCEC 58967033 + 58967013 58967053 41 CCTCGGTGGCCAGGAGCCCTCGACCTGGGACGAGCTGGGCG CCTCGGTGGCCAGGAGCCCTCGACATGGGACGAGCTGGGCG < 41bp 0.661923143555183 0.915447051885513 0.5043644 0.5964468 prediction 0.50704781666066 Functional Gain - ZNF324B ENSG00000249471 CDS Human protein_coding chr19:58967033 chr19:58967037 synonymous SNV . 0 25 hm5C_associated_SNPs_107638 0 0 0 0 0 exosome 0.500231642760142 0.500231643921092 0.1841648 2.32189978355279e-09 hm5C_site_60783 DeepMRMD:0.1841648;iRNA_m5C:2.32189978355279e-09 60784 chr19 17449927 17449927 1 + C G HNSC 17449926 + 17449906 17449946 41 CTCTGCCTGCCTTCTCTCACCCACAGCCGACATCGAAGTAC CTCTGCCTGCCTTCTCTCACCGACAGCCGACATCGAAGTAC < 41bp 0.43894697444945 0.753521348888322 0.032588214 0.16977948 prediction 0.507042697776643 Functional Gain - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17449926 chr19:17449927 synonymous SNV . 0 22 hm5C_associated_SNPs_107639 0 0 1 0 0 Ribosome 0.500216242122626 0.500243212661204 0 5.39410771562832e-05 hm5C_site_60784 DeepMRMD:0;iRNA_m5C:5.39410771562832e-05 60785 chr19 40149108 40149108 1 + C A LUAD 40149107 + 40149087 40149127 41 GCTTTGCCCTCAGCAACGAACCACAGCTGCAGGTGGATTTC GCTTTGCCCTCAGCAACGAACAACAGCTGCAGGTGGATTTC < 41bp 0.498515251738932 0.753518623058116 0.05413142 0.35633755 prediction 0.507037246116233 Functional Gain - LGALS16 ENSG00000249861 CDS Human protein_coding chr19:40149107 chr19:40149108 nonsynonymous SNV 0.007 3 22 hm5C_associated_SNPs_107640 0 0 0 0 1 unknown 0.50019899739001 0.500073900948206 0 0 hm5C_site_60785 DeepMRMD:0;iRNA_m5C:0 60786 chr6 106552753 106552753 1 + C A GBM 106552749 + 106552729 106552769 41 AGCACTGAGAAAAATGAACTCTGCCCAAAGAATGTCCCAAA AGCACTGAGAAAAATGAACTCTGCACAAAGAATGTCCCAAA < 41bp 0.326137258452093 0.753504304764184 0.022088587 0.032888055 prediction 0.507008609528368 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106552749 chr6:106552753 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_107641 0 0 0 0 1 cytosol 0.500231643920979 0.500231643882016 0 0 hm5C_site_60786 DeepMRMD:0;iRNA_m5C:0 60787 chr6 148664346 148664346 1 + T C UCEC 148664344 + 148664324 148664364 41 TTCTCCCGACTCTGGACCGACGTGATGGGTATCCTGGTAAG TTCTCCCGACTCTGGACCGACGCGATGGGTATCCTGGTAAG < 41bp 0.52204722959865 0.775546847704514 0.7862503 0.47829747 prediction 0.506999236211727 Functional Gain - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148664344 chr6:148664346 nonsynonymous SNV 0.996 1 23 hm5C_associated_SNPs_107642 0 0 0 0 1 Cytosol 0.500231641032296 0.500231643922169 0 5.77974534898829e-09 hm5C_site_60787 DeepMRMD:0;iRNA_m5C:5.77974534898829e-09 60788 chr3 10102063 10102063 1 + T C LIHC 10102061 + 10102041 10102081 41 GGGATTATTGGTGCTGTGACCATGGCTGGCATCATGGCGGC GGGATTATTGGTGCTGTGACCACGGCTGGCATCATGGCGGC < 41bp 0.540095072667426 0.79359387487835 0.69337034 0.82260877 prediction 0.506997604421849 Functional Gain - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10102061 chr3:10102063 nonsynonymous SNV 0.994 3 23 hm5C_associated_SNPs_107643 0 0 1 0 2 Cytosol 0.500231643920381 0.500231646182747 0.25847686 4.52473281065124e-09 hm5C_site_60788 DeepMRMD:0.25847686;iRNA_m5C:4.52473281065124e-09 60789 chr1 214099909 214099909 1 + C A rs76359950 214099905 + 214099885 214099925 41 TATGCCTCAGGAAATCTTCACAGGCAGATTGAAATAGGGAG TATGCCTCAGGAAATCTTCACAGGAAGATTGAAATAGGGAG < 41bp 0.617298028351673 0.870794058272026 0.417338 0.40177274 prediction 0.506992059840706 Functional Gain - LINC00538 ENSG00000230461 ncRNA_intronic Human processed_transcript chr1:214099905 chr1:214099909 . . 0 25 hm5C_associated_SNPs_107644 0 0 0 0 0 unknown 0.500231638934073 0.500231640152005 0 2.43586284476294e-09 hm5C_site_60789 DeepMRMD:0;iRNA_m5C:2.43586284476294e-09 60790 chr2 98996706 98996706 1 + C A rs114108462 98996705 + 98996685 98996725 41 TGCACCACCAGGACCAGGGACCGGACTCTTTTCCTGATCGT TGCACCACCAGGACCAGGGACAGGACTCTTTTCCTGATCGT < 41bp 0.519781216623137 0.773275444759499 0.3926075 0.43064278 prediction 0.506988456272723 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98996705 chr2:98996706 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_107645 0 0 0 0 1 nucleus 0.500221921098553 0.500231642171523 0 1.94421459391858e-05 hm5C_site_60790 DeepMRMD:0;iRNA_m5C:1.94421459391858e-05 60791 chr19 51981876 51981876 1 + C A UCEC 51981875 + 51981855 51981895 41 TCTCTGGAGGGACCCCTCCTCCTGGAGGACCCCAGGCAGCT TCTCTGGAGGGACCCCTCCTCATGGAGGACCCCAGGCAGCT < 41bp 0.52330133653081 0.776795015897125 0.26282486 0.7730892 prediction 0.50698735873263 Functional Gain - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51981875 chr19:51981876 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_107646 0 0 0 0 1 unknown 0.500231643921092 0.500231643921085 0.5461784 0 hm5C_site_60791 DeepMRMD:0.5461784;iRNA_m5C:0 60792 chr11 73007592 73007592 1 + C G PRAD 73007588 + 73007568 73007608 41 AATGGGACAATGGCACAGGCCAGGCTCTGGGCTTGCCACCC AATGGGACAATGGCACAGGCCAGGGTCTGGGCTTGCCACCC < 41bp 0.589928550304919 0.843418908846478 0.39591056 0.90173954 prediction 0.50698071708312 Functional Gain - P2RY6 ENSG00000171631 CDS Human protein_coding chr11:73007588 chr11:73007592 nonsynonymous SNV 0.982 0 25 hm5C_associated_SNPs_107647 0 0 0 0 1 exosome 0.500231643921097 0.500231643977122 0.80347908 1.12051701250948e-10 hm5C_site_60792 DeepMRMD:0.80347908;iRNA_m5C:1.12051701250948e-10 60793 chr17 75524749 75524749 1 + C G rs545631876 75524748 + 75524728 75524768 41 CCCGGCGCTGCTCCTCCTTCCCCAGCTCCGCGCCTTCCCCT CCCGGCGCTGCTCCTCCTTCCGCAGCTCCGCGCCTTCCCCT < 41bp 0.460607470175805 0.753479640172039 0.28381538 0.825597 prediction 0.506959280344078 Functional Gain - SEPT9;LOC100507351 ENSG00000267665 ncRNA_exonic Human lincRNA chr17:75524748 chr17:75524749 . . 0 22 hm5C_associated_SNPs_107648 0 0 0 0 0 unknown 0.500231643921059 0.50023164392104 0.651194 0 hm5C_site_60793 DeepMRMD:0.651194;iRNA_m5C:0 60794 chr1 245006620 245006620 1 + G C rs189065914 245006624 - 245006604 245006644 41 AGACACAGGGCCAGAATAAACTGGCAAGTTTTCATTCCACA AGACACAGGGCCAGAATAAACTGGGAAGTTTTCATTCCACA < 41bp 0.536717837072625 0.790196721711516 0.21214217 0.4291994 prediction 0.506957769277782 Functional Gain - COX20 ENSG00000188206 ncRNA_exonic Human other chr1:245006624 chr1:245006620 . . 0 25 hm5C_associated_SNPs_107649 0 0 1 0 0 Ribosome 0.500231652534809 0.500231643921085 0 0 hm5C_site_60794 DeepMRMD:0;iRNA_m5C:0 60795 chr16 24046832 24046832 1 + C G rs199648786 24046831 + 24046811 24046851 41 CGCCGCGGCCGCATCTACATCCAGGCCCACATCGACAGGGA CGCCGCGGCCGCATCTACATCGAGGCCCACATCGACAGGGA < 41bp 0.449720545552194 0.753465224575645 0.448929 0.91691315 prediction 0.50693044915129 Functional Gain - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24046831 chr16:24046832 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107650 0 0 1 0 2 Ribosome 0.500231643914119 0.500231643917493 0.8338263 6.74682532064708e-12 hm5C_site_60795 DeepMRMD:0.8338263;iRNA_m5C:6.74682532064708e-12 60796 chr11 118277757 118277757 1 + T C LIHC 118277755 + 118277735 118277775 41 ATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTCAATAG ATCCCTAGAGCTATTCAGAGCCCGAAAAAAATAGTCAATAG < 41bp 0.531689658825758 0.785153610188366 0.10356775 0.15190518 prediction 0.506927902725216 Functional Gain - ATP5L ENSG00000167283 CDS Human protein_coding chr11:118277755 chr11:118277757 nonsynonymous SNV 0.998 1 23 hm5C_associated_SNPs_107651 0 0 1 0 1 Ribosome 0.500231643921715 0.500231643926178 0 8.92619311798626e-12 hm5C_site_60796 DeepMRMD:0;iRNA_m5C:8.92619311798626e-12 60797 chr21 47706297 47706297 1 + C A rs2298699 47706293 + 47706273 47706313 41 GGCTTCCGGTCGGGAGGGTCCGCCCGCTCTCGCGTCCTTTG GGCTTCCGGTCGGGAGGGTCCGCCAGCTCTCGCGTCCTTTG < 41bp 0.639527634261497 0.892980968128196 0.26264238 0.71091783 prediction 0.506906667733397 Functional Gain - YBEY ENSG00000182362 UTR5 Human protein_coding chr21:47706293 chr21:47706297 . . 0 25 hm5C_associated_SNPs_107652 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921098 0.42183566 1.08801856413265e-14 hm5C_site_60797 DeepMRMD:0.42183566;iRNA_m5C:1.08801856413265e-14 60798 chr16 3169388 3169388 1 + C G rs201598677 3169384 + 3169364 3169404 41 TGCGCGCAGGAAGCAGCCTGCGGCCGGAGCTCAGGGCCGGC TGCGCGCAGGAAGCAGCCTGCGGCGGGAGCTCAGGGCCGGC < 41bp 0.559163266430342 0.812606795871048 0.8431318 0.91153276 prediction 0.506887058881412 Functional Gain - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3169384 chr16:3169388 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_107653 0 0 0 0 0 chromatin 0.500231639404745 0.500231643921092 0.13680192 9.03269503638171e-09 hm5C_site_60798 DeepMRMD:0.13680192;iRNA_m5C:9.03269503638171e-09 60799 chr5 122425877 122425877 1 + C G rs537520863 122425873 + 122425853 122425893 41 GCCTCTTCAGCCGCCGCCGCCGCCCCCGCCCCCGGAGCGCG GCCTCTTCAGCCGCCGCCGCCGCCGCCGCCCCCGGAGCGCG < 41bp 0.555295276010109 0.808728971067004 0.33444667 0.42219266 prediction 0.50686739011379 Functional Gain - PRDM6 ENSG00000061455 CDS Human protein_coding chr5:122425873 chr5:122425877 synonymous SNV . 0 25 hm5C_associated_SNPs_107654 0 0 1 0 0 exosome 0.500231644007595 0.500231643912816 0 0 hm5C_site_60799 DeepMRMD:0;iRNA_m5C:0 60800 chr1 247582313 247582313 1 + T A LUSC 247582309 + 247582289 247582329 41 GAGAAGGCGTGGGCCATGGCCGTGTGGATCTTCGCTGCGAT GAGAAGGCGTGGGCCATGGCCGTGAGGATCTTCGCTGCGAT < 41bp 0.454940432818302 0.753427102218134 0.4452244 0.41146755 prediction 0.506854204436268 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247582309 chr1:247582313 nonsynonymous SNV 0.960 0 25 hm5C_associated_SNPs_107655 0 0 0 0 1 Nucleus 0.500231638271683 0.500231641353883 0 6.16439921330425e-09 hm5C_site_60800 DeepMRMD:0;iRNA_m5C:6.16439921330425e-09 60801 chr9 90500018 90500018 1 + C A COAD 90500017 + 90499997 90500037 41 GCCTCCACCCTGTCACCAGGCCCGATGACCTTCTCAGAGCC GCCTCCACCCTGTCACCAGGCACGATGACCTTCTCAGAGCC < 41bp 0.49975124134208 0.753425272758833 0.13999158 0.1692217 prediction 0.506850545517666 Functional Gain - SPATA31E1 ENSG00000177992 CDS Human protein_coding chr9:90500017 chr9:90500018 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_107656 0 0 0 0 0 exosome 0.500251839471558 0.500231471614774 0 0 hm5C_site_60801 DeepMRMD:0;iRNA_m5C:0 60802 chr11 93088587 93088587 1 + T C HNSC 93088585 + 93088565 93088605 41 GAATTAATGGAACAAATTGACATCATGGTAAGCAACAAGAA GAATTAATGGAACAAATTGACACCATGGTAAGCAACAAGAA < 41bp 0.56983466535994 0.82325530452755 0.042580605 0.017453074 prediction 0.506841278335219 Functional Gain - DEUP1 ENSG00000165325 CDS Human protein_coding chr11:93088585 chr11:93088587 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107657 0 0 0 0 1 unknown 0.5002293416242 0.500214458259344 0 0 hm5C_site_60802 DeepMRMD:0;iRNA_m5C:0 60803 chr17 39346595 39346595 1 + T A READ 39346591 + 39346571 39346611 41 AGGAACACCTCTTGCCAGCCCACCTGCTGTGGGTCCAGCTG AGGAACACCTCTTGCCAGCCCACCAGCTGTGGGTCCAGCTG < 41bp 0.611374210106906 0.8647940496858 0.21414205 0.29337317 prediction 0.506839679157788 Functional Gain - KRTAP9-1 ENSG00000240542 CDS Human protein_coding chr17:39346591 chr17:39346595 nonsynonymous SNV 0.033 0 25 hm5C_associated_SNPs_107658 0 0 0 0 0 unknown 0.500231643921092 0.50023164392105 0 0 hm5C_site_60803 DeepMRMD:0;iRNA_m5C:0 60804 chr2 71591136 71591136 1 + C T SKCM 71591135 + 71591115 71591155 41 CCACGAAGACGTTCTCATTCCCCCAGTCCTAGGCGTTCTAG CCACGAAGACGTTCTCATTCCTCCAGTCCTAGGCGTTCTAG < 41bp 0.511562675502413 0.76497912449415 0.14975688 0.93489635 prediction 0.506832897983473 Functional Gain - ZNF638 ENSG00000075292 CDS Human protein_coding chr2:71591135 chr2:71591136 nonsynonymous SNV 1.000 1 22 hm5C_associated_SNPs_107659 0 0 1 0 1 Nucleus 0.500232627196493 0.500231743813922 0.8697927 0 hm5C_site_60804 DeepMRMD:0.8697927;iRNA_m5C:0 60805 chrX 69500109 69500109 1 + C A UCEC 69500108 + 69500088 69500128 41 TCCTACAAAGTCAGAGTCAACCTGATGGTGTCCTGTGGTGG TCCTACAAAGTCAGAGTCAACATGATGGTGTCCTGTGGTGG < 41bp 0.490375777904554 0.753415800472849 0.21246725 0.16418603 prediction 0.506831600945698 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500108 chrX:69500109 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_107660 0 0 0 0 2 Cytosol 0.500231661196006 0.500232254400488 0 1.18640896573652e-06 hm5C_site_60805 DeepMRMD:0;iRNA_m5C:1.18640896573652e-06 60806 chr3 9971783 9971783 1 + T G COAD 9971780 + 9971760 9971800 41 GCCCCCAGGACAACAGATCCCTCTGTGCCTTGGAACCCAGT GCCCCCAGGACAACAGATCCCTCGGTGCCTTGGAACCCAGT < 41bp 0.389803516790284 0.753414846387412 0.15031439 0.49972078 prediction 0.506829692774823 Functional Gain - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9971780 chr3:9971783 nonsynonymous SNV 0.997 3 24 hm5C_associated_SNPs_107661 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60806 DeepMRMD:0;iRNA_m5C:0 60807 chr15 41774564 41774564 1 + C G rs192490973 41774563 + 41774543 41774583 41 ACAGCTGAGAGCTCCGATCTCCACGAGAGACTAATCTAAAA ACAGCTGAGAGCTCCGATCTCGACGAGAGACTAATCTAAAA < 41bp 0.481652859365415 0.753414486197538 0.7457005 0.8957588 prediction 0.506828972395076 Functional Gain - RTF1 ENSG00000137815 UTR3 Human protein_coding chr15:41774563 chr15:41774564 . . 0 22 hm5C_associated_SNPs_107662 0 0 1 0 0 Cytosol 0.500221653790795 0.500231643707543 0.3001166 1.99798334961088e-05 hm5C_site_60807 DeepMRMD:0.3001166;iRNA_m5C:1.99798334961088e-05 60808 chr11 120198227 120198227 1 + T C UCEC 120198225 + 120198205 120198245 41 CTCTATATTTCTTTCTGCCACCTGAATAAGCACCGAAGCTA CTCTATATTTCTTTCTGCCACCCGAATAAGCACCGAAGCTA < 41bp 0.519223259374398 0.772635206175326 0.35246557 0.20896208 prediction 0.506823893601857 Functional Gain - TMEM136 ENSG00000181264 CDS Human protein_coding chr11:120198225 chr11:120198227 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_107663 0 0 0 0 3 Endoplasmic reticulum 0.500231511242417 0.500230305241144 0 0 hm5C_site_60808 DeepMRMD:0;iRNA_m5C:0 60809 chr16 70497604 70497604 1 + T A HNSC 70497600 + 70497580 70497620 41 CCGTGGAGGACCCAGAGAAGCGTGTGGGCAGCGGAGGAGCC CCGTGGAGGACCCAGAGAAGCGTGAGGGCAGCGGAGGAGCC < 41bp 0.445582734607489 0.753407825365856 0.3913834 0.49638203 prediction 0.506815650731712 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70497600 chr16:70497604 nonsynonymous SNV 0.785 4 25 hm5C_associated_SNPs_107664 0 0 1 0 2 chromatin 0.500231644064472 0.500231646118958 0 4.10897182945291e-09 hm5C_site_60809 DeepMRMD:0;iRNA_m5C:4.10897182945291e-09 60810 chr10 71851564 71851564 1 + C T STAD 71851563 + 71851543 71851583 41 GGCGTCCTGCCCAGAATTCACCCCGAACTGCTGGCCAAAAA GGCGTCCTGCCCAGAATTCACTCCGAACTGCTGGCCAAAAA < 41bp 0.540443750915112 0.793850075863935 0.37181115 0.47239938 prediction 0.506812649897646 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71851563 chr10:71851564 nonsynonymous SNV 0.986 1 22 hm5C_associated_SNPs_107665 0 0 0 1 1 Ribosome 0.500231643921092 0.500231643921142 0 9.9475983006414e-14 hm5C_site_60810 DeepMRMD:0;iRNA_m5C:9.9475983006414e-14 60811 chr19 52856992 52856992 1 + C G rs115821660 52856991 + 52856971 52857011 41 TCTCAGGAGGAGTGGAAATCCCTGGACCCTGGACAGAGGGC TCTCAGGAGGAGTGGAAATCCGTGGACCCTGGACAGAGGGC < 41bp 0.446748321275549 0.753399283439901 0.15425545 0.32975212 prediction 0.506798566879803 Functional Gain - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52856991 chr19:52856992 nonsynonymous SNV 0.024 3 22 hm5C_associated_SNPs_107666 0 0 0 0 2 exosome 0.500231637804536 0.500232392409466 0 1.50920986063952e-06 hm5C_site_60811 DeepMRMD:0;iRNA_m5C:1.50920986063952e-06 60812 chr7 66415947 66415947 1 + C T COAD 66415946 + 66415926 66415966 41 TCTTCTCCTGCAGACAGCCACCGCACTGTGTTCCTGACACG TCTTCTCCTGCAGACAGCCACTGCACTGTGTTCCTGACACG < 41bp 0.504877200855131 0.758276234819376 0.08570266 0.17921144 prediction 0.50679806792849 Functional Gain - TMEM248 ENSG00000106609 CDS Human protein_coding chr7:66415946 chr7:66415947 nonsynonymous SNV 0.915 1 22 hm5C_associated_SNPs_107667 0 0 1 0 1 Ribosome 0.500230403189352 0.500231641871915 0 2.47736512704044e-06 hm5C_site_60812 DeepMRMD:0;iRNA_m5C:2.47736512704044e-06 60813 chr10 95326706 95326706 1 + C A HNSC 95326702 + 95326682 95326722 41 CGACGCCGCGGCGCGACTGCCTGCCTGGTACTCAACCTCTT CGACGCCGCGGCGCGACTGCCTGCATGGTACTCAACCTCTT < 41bp 0.674557451115259 0.927956306947146 0.14669693 0.69961643 prediction 0.506797711663774 Functional Gain - FFAR4 ENSG00000186188 CDS Human protein_coding chr10:95326702 chr10:95326706 nonsynonymous SNV 0.890 2 25 hm5C_associated_SNPs_107668 0 0 0 0 0 cytosol 0.500231643921088 0.500231547392537 0.39923286 0 hm5C_site_60813 DeepMRMD:0.39923286;iRNA_m5C:0 60814 chr16 28847336 28847336 1 + C G COAD 28847332 + 28847312 28847352 41 CGCCCCAGGTGATGCTGCTGCACCCACCCCAGAGTCATGGG CGCCCCAGGTGATGCTGCTGCACCGACCCCAGAGTCATGGG < 41bp 0.52678535980436 0.780178682009484 0.10673219 0.1251617 prediction 0.506786644410248 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847332 chr16:28847336 nonsynonymous SNV 0.999 4 25 hm5C_associated_SNPs_107669 0 0 1 0 1 Cytosol 0.500231643979467 0.500231688137439 0 8.8315944113404e-08 hm5C_site_60814 DeepMRMD:0;iRNA_m5C:8.8315944113404e-08 60815 chr3 127325478 127325478 1 + C A KIRC 127325477 + 127325457 127325497 41 CTGCATCTGAACCAGCTGATCCGCACCAGTGGGGTGGTGAC CTGCATCTGAACCAGCTGATCAGCACCAGTGGGGTGGTGAC < 41bp 0.507564210971191 0.760944476486393 0.36490038 0.8627258 prediction 0.506760531030404 Functional Gain - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127325477 chr3:127325478 nonsynonymous SNV 0.996 4 22 hm5C_associated_SNPs_107670 0 0 1 0 1 Cytosol 0.500231648832338 0.500234879159341 0.7254516 6.46065400511375e-06 hm5C_site_60815 DeepMRMD:0.7254516;iRNA_m5C:6.46065400511375e-06 60816 chr13 101707741 101707741 1 + T C UCEC 101707739 + 101707719 101707759 41 TTCAGAACCGCAGGAAGCCGCGTCAGTCATGGGGTTCATTT TTCAGAACCGCAGGAAGCCGCGCCAGTCATGGGGTTCATTT < 41bp 0.476202954562233 0.75336652683825 0.15505993 0.27658522 prediction 0.506733053676501 Functional Gain - NALCN ENSG00000102452 CDS Human protein_coding chr13:101707739 chr13:101707741 nonsynonymous SNV 0.743 2 23 hm5C_associated_SNPs_107671 0 0 0 0 1 exosome 0.500369148979523 0.500118442605535 0 0 hm5C_site_60816 DeepMRMD:0;iRNA_m5C:0 60817 chr19 19655201 19655201 1 + C A LIHC 19655197 + 19655177 19655217 41 CGTTCGTGGACCCCCGAGACCTCACCTCGGCGGCGTCTGCC CGTTCGTGGACCCCCGAGACCTCAACTCGGCGGCGTCTGCC < 41bp 0.32949780619063 0.753364474837023 0.38061756 0.3609389 prediction 0.506728949674047 Functional Gain - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19655197 chr19:19655201 nonsynonymous SNV 0.065 1 25 hm5C_associated_SNPs_107672 0 0 1 0 0 exosome 0.50023163134357 0.500231661890893 0 6.10946457868522e-08 hm5C_site_60817 DeepMRMD:0;iRNA_m5C:6.10946457868522e-08 60818 chr20 48504682 48504682 1 + C G rs185204675 48504678 + 48504658 48504698 41 ACTTCTTGGGAAACTGTCATCTCCCGACTCCTCCCTGAGCC ACTTCTTGGGAAACTGTCATCTCCGGACTCCTCCCTGAGCC < 41bp 0.458602795655923 0.753363471278134 0.21688169 0.8115267 prediction 0.506726942556267 Functional Gain - SLC9A8 ENSG00000197818 UTR3 Human protein_coding chr20:48504678 chr20:48504682 . . 0 25 hm5C_associated_SNPs_107673 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921079 0.6230534 0 hm5C_site_60818 DeepMRMD:0.6230534;iRNA_m5C:0 60819 chr6 6725271 6725271 1 + C G rs77893266 6725267 + 6725247 6725287 41 CAGCGCCTAGAGCCCATTCGCAGACAGCGCGCTGAGGCGGC CAGCGCCTAGAGCCCATTCGCAGAGAGCGCGCTGAGGCGGC < 41bp 0.554408388202078 0.807758910801512 0.7201232 0.9267136 prediction 0.506701045198867 Functional Gain - LY86;RREB1 ENSG00000226281;ENSG00000224532 intergenic Human other chr6:6725267 chr6:6725271 . . 0 25 hm5C_associated_SNPs_107674 0 0 0 0 0 unknown 0.50023164487249 0.500231643762153 0.4131808 0 hm5C_site_60819 DeepMRMD:0.4131808;iRNA_m5C:0 60820 chr11 57947407 57947407 1 + T C UCEC 57947405 + 57947385 57947425 41 TTGGTGCGGACAGTCTCAGCCTTCACTCTCTCCTTCTGTGG TTGGTGCGGACAGTCTCAGCCTCCACTCTCTCCTTCTGTGG < 41bp 0.470660661384643 0.753348336858386 0.030244946 0.901211 prediction 0.506696673716772 Functional Gain - OR9Q1 ENSG00000186509 CDS Human protein_coding chr11:57947405 chr11:57947407 nonsynonymous SNV 0.143 4 23 hm5C_associated_SNPs_107675 0 0 0 0 0 nucleus 0.500231643174131 0.500231589801215 0.802422 0 hm5C_site_60820 DeepMRMD:0.802422;iRNA_m5C:0 60821 chr13 77566320 77566320 1 + C G rs138037471 77566319 + 77566299 77566339 41 ACGCGCTTCCTGGTGCTGGGCCCTGGCGCTGCTTTGGCTCG ACGCGCTTCCTGGTGCTGGGCGCTGGCGCTGCTTTGGCTCG < 41bp 0.461681948787391 0.753337184162327 0.2196314 0.3342575 prediction 0.506674368324654 Functional Gain - CLN5 ENSG00000102805 CDS Human protein_coding chr13:77566319 chr13:77566320 synonymous SNV . 0 22 hm5C_associated_SNPs_107676 3 0 1 0 1 Endoplasmic reticulum 0.500230665185389 0.500231646524133 0 1.96267748675538e-06 hm5C_site_60821 DeepMRMD:0;iRNA_m5C:1.96267748675538e-06 not specified not specified 60822 chr19 47844248 47844248 1 + C G rs377057595 47844247 + 47844227 47844267 41 CTGGGTGGCTGGGAAGGTGGCCCGCCGGAGGGTGGGTGCCA CTGGGTGGCTGGGAAGGTGGCGCGCCGGAGGGTGGGTGCCA < 41bp 0.591666284276075 0.84500254521353 0.4664 0.7299178 prediction 0.506672521874909 Functional Gain - C5AR2 ENSG00000134830 CDS Human protein_coding chr19:47844247 chr19:47844248 synonymous SNV . 0 22 hm5C_associated_SNPs_107677 0 0 0 0 0 exosome 0.500231643921093 0.500231643299275 0.4598356 0 hm5C_site_60822 DeepMRMD:0.4598356;iRNA_m5C:0 60823 chr6 26205013 26205013 1 + T G UCEC 26205010 + 26204990 26205030 41 CGTCGCGGGGGTGTCAAGCGCATTTCTGGTCTCATCTACGA CGTCGCGGGGGTGTCAAGCGCATGTCTGGTCTCATCTACGA < 41bp 0.364917696555944 0.753333448876006 0.44699907 0.44655937 prediction 0.506666897752011 Functional Gain - HIST1H4E ENSG00000198518 CDS Human other chr6:26205010 chr6:26205013 nonsynonymous SNV 0.011 0 24 hm5C_associated_SNPs_107678 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643921124 0 6.30606677987089e-14 hm5C_site_60823 DeepMRMD:0;iRNA_m5C:6.30606677987089e-14 60824 chr1 156314453 156314453 1 + C T SKCM 156314452 + 156314432 156314472 41 TATTAATCTTCAAGCAAGTTCCCCACCAGCCACTTTTCTGA TATTAATCTTCAAGCAAGTTCTCCACCAGCCACTTTTCTGA < 41bp 0.479185901749831 0.7533274223481 0.01273188 0.9357793 prediction 0.5066548446962 Functional Gain - TSACC ENSG00000163467 CDS Human protein_coding chr1:156314452 chr1:156314453 synonymous SNV . 0 22 hm5C_associated_SNPs_107679 0 0 0 0 2 chromatin 0.500231643921092 0.500231643921093 0.8715586 1.33226762955019e-15 hm5C_site_60824 DeepMRMD:0.8715586;iRNA_m5C:1.33226762955019e-15 60825 chr21 43716393 43716393 1 + T C LUAD 43716391 + 43716371 43716411 41 GCCATCCTGCGGGAGCTGGACGTGGAAAATGCCAAGCTGTA GCCATCCTGCGGGAGCTGGACGCGGAAAATGCCAAGCTGTA < 41bp 0.493202065032213 0.753308148596618 0.83579856 0.886572 prediction 0.506616297193236 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43716391 chr21:43716393 nonsynonymous SNV 0.994 2 23 hm5C_associated_SNPs_107680 0 0 0 0 0 Cytosol 0.500231643919829 0.500231643920066 0.10154688 4.72955008490317e-13 hm5C_site_60825 DeepMRMD:0.10154688;iRNA_m5C:4.72955008490317e-13 60826 chr1 29606120 29606120 1 + C A rs117122029 29606116 + 29606096 29606136 41 GTTCTCCGTGCGGGCCCGCACAGGCAAAGGCTTCGGCCAGG GTTCTCCGTGCGGGCCCGCACAGGAAAAGGCTTCGGCCAGG < 41bp 0.666976838842342 0.92028020680174 0.43437272 0.76993346 prediction 0.506606735918796 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29606116 chr1:29606120 synonymous SNV . 0 25 hm5C_associated_SNPs_107681 0 0 0 0 1 Endoplasmic reticulum 0.500231643946403 0.500231643921081 0.53986692 0 hm5C_site_60826 DeepMRMD:0.53986692;iRNA_m5C:0 60827 chr19 1036456 1036456 1 + C G rs1064410 1036452 + 1036432 1036472 41 CGCCAGCCAGTCGGGCATGACTGCCTACGGCACGAGAAGGC CGCCAGCCAGTCGGGCATGACTGCGTACGGCACGAGAAGGC < 41bp 0.476392418232304 0.753302838467531 0.28984258 0.4366116 prediction 0.506605676935063 Functional Gain - CNN2 ENSG00000064666 CDS Human protein_coding chr19:1036452 chr19:1036456 synonymous SNV . 0 25 hm5C_associated_SNPs_107682 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_60827 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 60828 chr11 209797 209797 1 + C T UCEC 209796 + 209776 209816 41 CTCTTCCTGCTAACGGCACTCCGCACCGATGTGCGCCAGCA CTCTTCCTGCTAACGGCACTCTGCACCGATGTGCGCCAGCA < 41bp 0.518997204623386 0.772299500659367 0.13041043 0.29827785 prediction 0.506604592071961 Functional Gain - RIC8A ENSG00000177963 CDS Human protein_coding chr11:209796 chr11:209797 nonsynonymous SNV 0.554 3 22 hm5C_associated_SNPs_107683 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60828 DeepMRMD:0;iRNA_m5C:0 60829 chr2 70485032 70485032 1 + C G rs112193204 70485028 + 70485008 70485048 41 ATTACAGGCTTGAGCCACCGCGCCCGGCCAGCTTCTGCCTT ATTACAGGCTTGAGCCACCGCGCCGGGCCAGCTTCTGCCTT < 41bp 0.507091161223183 0.760393176616307 0.19850573 0.4402953 prediction 0.506604030786248 Functional Gain - PCYOX1 ENSG00000116005 UTR5 Human protein_coding chr2:70485028 chr2:70485032 . . 0 25 hm5C_associated_SNPs_107684 0 0 0 0 0 Ribosome 0.500231739241726 0.500231670279713 0 0 hm5C_site_60829 DeepMRMD:0;iRNA_m5C:0 60830 chr14 62598018 62598018 1 + T A rs77061959 62598014 + 62597994 62598034 41 TGTCCACCTAGCCTAAAAGCCAAGTGAAGAAGAACATAAAA TGTCCACCTAGCCTAAAAGCCAAGAGAAGAAGAACATAAAA < 41bp 0.506041372227346 0.75934318181726 0.89877105 0.8268812 prediction 0.506603619179827 Functional Gain - LINC00643 ENSG00000186369;ENSG00000259142 intergenic Human other chr14:62598014 chr14:62598018 . . 0 25 hm5C_associated_SNPs_107685 0 0 0 0 0 unknown 0.500231640927584 0.500231643916236 0 5.97730398510521e-09 hm5C_site_60830 DeepMRMD:0;iRNA_m5C:5.97730398510521e-09 60831 chr21 46021179 46021179 1 + C A rs363877 46021175 + 46021155 46021195 41 TCGTGCTGCCAGCAGTCTAGCTGCCAGCCGGCTTGCTGCAC TCGTGCTGCCAGCAGTCTAGCTGCAAGCCGGCTTGCTGCAC < 41bp 0.66410872230102 0.917406864908741 0.24217212 0.32518128 prediction 0.506596285215442 Functional Gain - KRTAP10-7 ENSG00000205441 CDS Human other chr21:46021175 chr21:46021179 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_107686 0 0 0 0 0 unknown 0.500231643940892 0.500231634432882 0 0 hm5C_site_60831 DeepMRMD:0;iRNA_m5C:0 60832 chr19 36027886 36027886 1 + T G UCEC 36027884 + 36027864 36027904 41 GCCCGGGAGCTGACTGTGGGCATCAATGGGTGAGTCTACTC GCCCGGGAGCTGACTGTGGGCAGCAATGGGTGAGTCTACTC < 41bp 0.626520334104808 0.879815265922951 0.17454475 0.37475425 prediction 0.506589863636285 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36027884 chr19:36027886 nonsynonymous SNV 0.880 4 23 hm5C_associated_SNPs_107687 0 0 0 0 1 chromatin 0.500231608273674 0.500231643921177 0 7.12950067871532e-08 hm5C_site_60832 DeepMRMD:0;iRNA_m5C:7.12950067871532e-08 60833 chr4 7774715 7774715 1 + C A BLCA 7774714 + 7774694 7774734 41 CAGCTGCTTCAGCTTCTCCTCCAGGATCGCCTGCGGCTTCC CAGCTGCTTCAGCTTCTCCTCAAGGATCGCCTGCGGCTTCC < 41bp 0.499149405219726 0.753293695839211 0.45836002 0.52397126 prediction 0.506587391678422 Functional Gain - AFAP1 ENSG00000196526 CDS Human protein_coding chr4:7774714 chr4:7774715 synonymous SNV . 0 22 hm5C_associated_SNPs_107688 0 0 1 0 0 Ribosome 0.500231395923488 0.500231641567151 0.0479425200000001 4.91287326154222e-07 hm5C_site_60833 DeepMRMD:0.0479425200000001;iRNA_m5C:4.91287326154222e-07 60834 chr6 3015727 3015727 1 + C G rs146751537 3015726 + 3015706 3015746 41 ACTAGGAAACCTGAGGCGAGCCGCAGCCTCAGTTTCTCTTT ACTAGGAAACCTGAGGCGAGCGGCAGCCTCAGTTTCTCTTT < 41bp 0.459800621271978 0.753289042372892 0.26697916 0.76725024 prediction 0.506578084745784 Functional Gain - NQO2 ENSG00000124588 intronic Human protein_coding chr6:3015726 chr6:3015727 . . 0 22 hm5C_associated_SNPs_107689 0 0 0 0 0 Ribosome 0.500231646492579 0.500231643921879 0.53450048 0 hm5C_site_60834 DeepMRMD:0.53450048;iRNA_m5C:0 60835 chr22 29885744 29885744 1 + T C BLCA 29885742 + 29885722 29885762 41 TGAAGGAAGAAGCAAAGTCCCCTGAGAAGGCCAAGTCCCCA TGAAGGAAGAAGCAAAGTCCCCCGAGAAGGCCAAGTCCCCA < 41bp 0.49614706783644 0.753285607868363 0.07150823 0.04274285 prediction 0.506571215736725 Functional Gain - NEFH ENSG00000100285 CDS Human protein_coding chr22:29885742 chr22:29885744 synonymous SNV . 0 23 hm5C_associated_SNPs_107690 0 0 0 0 0 cytosol 0.500231643918739 0.50023164392111 0 4.74176253817404e-12 hm5C_site_60835 DeepMRMD:0;iRNA_m5C:4.74176253817404e-12 60836 chr1 220791762 220791762 1 + C A UCEC 220791758 + 220791738 220791778 41 GGACACATTTTGTGGAAGCCCACCCTATGCTGCTCCCGAGC GGACACATTTTGTGGAAGCCCACCATATGCTGCTCCCGAGC < 41bp 0.32289197105011 0.753283950188387 0.08007732 0.17336363 prediction 0.506567900376774 Functional Gain - MARK1 ENSG00000116141 CDS Human protein_coding chr1:220791758 chr1:220791762 synonymous SNV . 0 25 hm5C_associated_SNPs_107691 0 0 0 0 0 exosome 0.500231643921094 0.500231651230726 0 1.46192626893082e-08 hm5C_site_60836 DeepMRMD:0;iRNA_m5C:1.46192626893082e-08 60837 chr20 39729898 39729898 1 + C A SKCM 39729897 + 39729877 39729917 41 GGACATAAGTGGAAAGAAGTCCGGCATGATAACAAGGTTAC GGACATAAGTGGAAAGAAGTCAGGCATGATAACAAGGTTAC < 41bp 0.498519386624208 0.753282701541586 0.41198036 0.50685 prediction 0.506565403083171 Functional Gain - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39729897 chr20:39729898 synonymous SNV . 0 22 hm5C_associated_SNPs_107692 0 0 1 0 2 Nucleus 0.500231643921092 0.500231643921092 0.0137 0 hm5C_site_60837 DeepMRMD:0.0137;iRNA_m5C:0 60838 chr2 233274474 233274474 1 + C A LUSC 233274470 + 233274450 233274490 41 CTACACCGCCTGCGACCTGGCGCCCCGCGCCGGCACCACCG CTACACCGCCTGCGACCTGGCGCCACGCGCCGGCACCACCG < 41bp 0.660648029204215 0.91392591837532 0.46167904 0.6792378 prediction 0.50655577834221 Functional Gain - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233274470 chr2:233274474 synonymous SNV . 0 25 hm5C_associated_SNPs_107693 0 0 0 0 0 exosome 0.500231548852457 0.500228652427565 0.3584756 0 hm5C_site_60838 DeepMRMD:0.3584756;iRNA_m5C:0 60839 chr6 398857 398857 1 + T C LUAD 398855 + 398835 398875 41 GGTGACAGGAACCTTTTATGCTTGTGCCCCACCTGAGTCCC GGTGACAGGAACCTTTTATGCTCGTGCCCCACCTGAGTCCC < 41bp 0.477176468916248 0.753274822710587 0.19189504 0.2821737 prediction 0.506549645421173 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:398855 chr6:398857 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_107694 0 0 0 0 2 exosome 0.500231643928775 0.50023164067525 0 0 hm5C_site_60839 DeepMRMD:0;iRNA_m5C:0 60840 chr16 1705975 1705975 1 + T G UCEC 1705972 + 1705952 1705992 41 GTTCCCAGGCGAGAACTGTACACTGACACCGCTGCCGGGCG GTTCCCAGGCGAGAACTGTACACGGACACCGCTGCCGGGCG < 41bp 0.349266645900057 0.753261126021303 0.37464452 0.71490026 prediction 0.506522252042606 Functional Gain - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1705972 chr16:1705975 nonsynonymous SNV 0.853 3 24 hm5C_associated_SNPs_107695 0 0 1 0 1 chromatin 0.500231644787172 0.500231603431252 0.42980052 0 hm5C_site_60840 DeepMRMD:0.42980052;iRNA_m5C:0 60841 chr16 69184590 69184590 1 + C A UCEC 69184589 + 69184569 69184609 41 GTGCGCACTGTGGCCCACAGCCCAACAGCGCTGATATCTGG GTGCGCACTGTGGCCCACAGCACAACAGCGCTGATATCTGG < 41bp 0.51545742298578 0.768718040522082 0.07573584 0.11341554 prediction 0.506521235072603 Functional Gain - UTP4 ENSG00000141076 CDS Human protein_coding chr16:69184589 chr16:69184590 nonsynonymous SNV 0.817 0 22 hm5C_associated_SNPs_107696 0 0 1 0 1 Cytosol 0.50023164392079 0.500231576241121 0 0 hm5C_site_60841 DeepMRMD:0;iRNA_m5C:0 60842 chr7 157172597 157172597 1 + C G rs9297108 157172596 + 157172576 157172616 41 GCTCACTGTATCCTCCACCTCCGGGGTTCAAGCAATTTTCG GCTCACTGTATCCTCCACCTCGGGGGTTCAAGCAATTTTCG < 41bp 0.460376622586136 0.753259766944881 0.8960862 0.9260645 prediction 0.506519533889762 Functional Gain - DNAJB6 ENSG00000105993 intronic Human protein_coding chr7:157172596 chr7:157172597 . . 0 22 hm5C_associated_SNPs_107697 0 0 1 0 0 Ribosome 0.50023164391615 0.500231643921092 0.0599565999999998 9.88475967744762e-12 hm5C_site_60842 DeepMRMD:0.0599565999999998;iRNA_m5C:9.88475967744762e-12 60843 chr4 40752059 40752059 1 + C G rs114806571 40752058 + 40752038 40752078 41 GCGCTCACCCCTCTTCGCCGCCACGTCCGCGAAGGCCTCAC GCGCTCACCCCTCTTCGCCGCGACGTCCGCGAAGGCCTCAC < 41bp 0.469196617589166 0.753251764660905 0.14241272 0.34918755 prediction 0.50650352932181 Functional Gain - NSUN7 ENSG00000179299 UTR5 Human protein_coding chr4:40752058 chr4:40752059 . . 0 22 hm5C_associated_SNPs_107698 0 0 0 0 0 exosome 0.500231643916907 0.500231646237044 0 4.64027372082398e-09 hm5C_site_60843 DeepMRMD:0;iRNA_m5C:4.64027372082398e-09 60844 chr5 43628327 43628327 1 + T A LUSC 43628323 + 43628303 43628343 41 GCTGCAGCTTTGGAACAGTTCAAGTCTCTTGGTGCTGAGCC GCTGCAGCTTTGGAACAGTTCAAGACTCTTGGTGCTGAGCC < 41bp 0.429744420792076 0.75324949150292 0.40888435 0.6484639 prediction 0.506498983005841 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43628323 chr5:43628327 nonsynonymous SNV 0.996 3 25 hm5C_associated_SNPs_107699 0 0 1 0 1 Endoplasmic reticulum 0.500231627724721 0.500231643786146 0.2969278 3.21228492694559e-08 hm5C_site_60844 DeepMRMD:0.2969278;iRNA_m5C:3.21228492694559e-08 60845 chr20 19956226 19956226 1 + C A rs372947881 19956225 + 19956205 19956245 41 GCGGATGGTCCGCAGGATCGCCGAGCTTTCCCGGGACAAAT GCGGATGGTCCGCAGGATCGCAGAGCTTTCCCGGGACAAAT < 41bp 0.502437735613481 0.755686869908256 0.60878694 0.86707294 prediction 0.50649826858955 Functional Gain - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19956225 chr20:19956226 synonymous SNV . 0 22 hm5C_associated_SNPs_107700 0 0 0 0 0 Nucleus 0.500231606794218 0.500231643913487 0.516572 7.42385395380296e-08 hm5C_site_60845 DeepMRMD:0.516572;iRNA_m5C:7.42385395380296e-08 60846 chr16 31765100 31765100 1 + T C LIHC 31765098 + 31765078 31765118 41 ATCTTTCAGATATCTTTTCTCATGATACTCAAGGCCTCTTA ATCTTTCAGATATCTTTTCTCACGATACTCAAGGCCTCTTA < 41bp 0.5093919488569 0.76263872859849 0.35150948 0.2709049 prediction 0.50649355948318 Functional Gain - ZNF720 ENSG00000197302 CDS Human protein_coding chr16:31765098 chr16:31765100 synonymous SNV . 0 23 hm5C_associated_SNPs_107701 0 0 1 1 1 Endoplasmic reticulum 0.50023164407318 0.500231654239062 0 2.03317633840072e-08 hm5C_site_60846 DeepMRMD:0;iRNA_m5C:2.03317633840072e-08 60847 chr19 55672547 55672547 1 + C A UCEC 55672543 + 55672523 55672563 41 CCAGTACCCGCGCGCTGCCACGCGCTCCCCACGCTGGAAAA CCAGTACCCGCGCGCTGCCACGCGATCCCCACGCTGGAAAA < 41bp 0.659559621453179 0.912802170411097 0.47117278 0.82724583 prediction 0.506485097915835 Functional Gain - DNAAF3 ENSG00000167646 CDS Human protein_coding chr19:55672543 chr19:55672547 nonsynonymous SNV 0.662 2 25 hm5C_associated_SNPs_107702 0 0 0 0 1 nucleolus 0.500231643924038 0.50023164365741 0.65449166 0 hm5C_site_60847 DeepMRMD:0.65449166;iRNA_m5C:0 60848 chr8 106456593 106456593 1 + C A LUAD 106456589 + 106456569 106456609 41 GGGGCAACCTGGAGTTGAGACAGACGACTGGGATGGACCAG GGGGCAACCTGGAGTTGAGACAGAAGACTGGGATGGACCAG < 41bp 0.371972472816563 0.753239400454927 0.729598 0.7707784 prediction 0.506478800909854 Functional Gain - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106456589 chr8:106456593 nonsynonymous SNV 0.816 0 25 hm5C_associated_SNPs_107703 0 0 1 0 2 chromatin 0.500231643920865 0.500231643921092 0.0823608 4.54969395491389e-13 hm5C_site_60848 DeepMRMD:0.0823608;iRNA_m5C:4.54969395491389e-13 60849 chr1 205437503 205437503 1 + C G rs566222206 205437499 + 205437479 205437519 41 TGCTATAAGAGGGACAGAGCCAGGCCGGAGAGGATAAAGAG TGCTATAAGAGGGACAGAGCCAGGGCGGAGAGGATAAAGAG < 41bp 0.473483094972743 0.753238136970455 0.563487 0.883626 prediction 0.50647627394091 Functional Gain - BLACAT1;CDK18 ENSG00000224717 ncRNA_exonic Human lincRNA chr1:205437499 chr1:205437503 . . 0 25 hm5C_associated_SNPs_107704 0 0 0 1 0 unknown 0.500231643920393 0.500231643921308 0.640278 1.82986958918718e-12 hm5C_site_60849 DeepMRMD:0.640278;iRNA_m5C:1.82986958918718e-12 60850 chr15 45879699 45879699 1 + C A UCEC 45879695 + 45879675 45879715 41 GCCCTGACACGGCCACCCTACTGCCTGGAGGCCGGGGAGCC GCCCTGACACGGCCACCCTACTGCATGGAGGCCGGGGAGCC < 41bp 0.65983935390312 0.913074109218963 0.23323682 0.36366868 prediction 0.506469510631686 Functional Gain - BLOC1S6 ENSG00000104164 CDS Human protein_coding chr15:45879695 chr15:45879699 nonsynonymous SNV 0.053 1 25 hm5C_associated_SNPs_107705 0 0 1 0 1 Cytosol 0.500231643925682 0.500231643921093 0 0 hm5C_site_60850 DeepMRMD:0;iRNA_m5C:0 60851 chr19 57640930 57640930 1 + T G COAD 57640928 + 57640908 57640948 41 AATTTGGGAAACACCTGTTACATGAATGCAGTTTTACAATC AATTTGGGAAACACCTGTTACAGGAATGCAGTTTTACAATC < 41bp 0.616410932073892 0.869641710299655 0.16398287 0.34118256 prediction 0.506461556451526 Functional Gain - USP29 ENSG00000131864 CDS Human protein_coding chr19:57640928 chr19:57640930 nonsynonymous SNV 0.995 3 23 hm5C_associated_SNPs_107706 0 0 0 0 0 unknown 0.500231643921018 0.500231640043151 0 0 hm5C_site_60851 DeepMRMD:0;iRNA_m5C:0 60852 chr22 17517599 17517599 1 + C G rs372856608 17517595 + 17517575 17517615 41 GGGGAGCCCGGTGACCCAGGCAGCCCTGGTGAGGCCGCAGG GGGGAGCCCGGTGACCCAGGCAGCGCTGGTGAGGCCGCAGG < 41bp 0.550273123543194 0.803501662318524 0.429561 0.6083427 prediction 0.50645707755066 Functional Gain - CECR7 ENSG00000237438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17517595 chr22:17517599 . . 0 25 hm5C_associated_SNPs_107707 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0.2166854 0 hm5C_site_60852 DeepMRMD:0.2166854;iRNA_m5C:0 60853 chr18 54694713 54694713 1 + T A rs1787474 54694709 + 54694689 54694729 41 CCAGAGATGGCAGGGGAAAGCCAGTGGTTCCTGGGAACGCT CCAGAGATGGCAGGGGAAAGCCAGAGGTTCCTGGGAACGCT < 41bp 0.487292589689511 0.753222593436882 0.83565533 0.90411305 prediction 0.506445186873765 Functional Gain - WDR7 ENSG00000091157 UTR3 Human protein_coding chr18:54694709 chr18:54694713 . . 0 25 hm5C_associated_SNPs_107708 0 0 0 0 0 chromatin 0.50023164392075 0.500231643921092 0.13691544 6.84119427774021e-13 hm5C_site_60853 DeepMRMD:0.13691544;iRNA_m5C:6.84119427774021e-13 60854 chr21 45994278 45994278 1 + C A OV 45994274 + 45994254 45994294 41 TCGTGCTGCCAGCAGTCTAGCTGCCAGCCGGCTTGCTGCAC TCGTGCTGCCAGCAGTCTAGCTGCAAGCCGGCTTGCTGCAC < 41bp 0.657535545161398 0.910758082444775 0.24927256 0.33259982 prediction 0.506445074566753 Functional Gain - KRTAP10-4 ENSG00000215454 CDS Human protein_coding chr21:45994274 chr21:45994278 nonsynonymous SNV 0.942 0 25 hm5C_associated_SNPs_107709 0 0 0 0 0 unknown 0.500231643940892 0.500231634432882 0 0 hm5C_site_60854 DeepMRMD:0;iRNA_m5C:0 60855 chr1 202276000 202276000 1 + C A STAD 202275996 + 202275976 202276016 41 AGCCTCTCTTGCTGCCCTAGCGGCCTCCAACACAACCGCAT AGCCTCTCTTGCTGCCCTAGCGGCATCCAACACAACCGCAT < 41bp 0.347048399910434 0.75321982837392 0.40743378 0.48894802 prediction 0.50643965674784 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202275996 chr1:202276000 nonsynonymous SNV 0.907 4 25 hm5C_associated_SNPs_107710 0 0 0 0 1 nucleoplasm 0.500231643924085 0.500231643923103 0 0 hm5C_site_60855 DeepMRMD:0;iRNA_m5C:0 60856 chr14 62547848 62547848 1 + C A UCEC 62547844 + 62547824 62547864 41 GCTGGAGCCCAGAGATGTGGCTGCCTGTGCTGTCCGCTTCC GCTGGAGCCCAGAGATGTGGCTGCATGTGCTGTCCGCTTCC < 41bp 0.677669621681467 0.930885458672312 0.14702877 0.9034412 prediction 0.506431673981689 Functional Gain - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62547844 chr14:62547848 synonymous SNV . 0 25 hm5C_associated_SNPs_107711 0 0 0 0 0 exosome 0.500231643915897 0.500231642858592 0.8068824 0 hm5C_site_60856 DeepMRMD:0.8068824;iRNA_m5C:0 60857 chr11 6867280 6867280 1 + C A LUSC 6867279 + 6867259 6867299 41 CTGGCTACCATGGCATATGACCGCTATGTGGCCATCTGCAG CTGGCTACCATGGCATATGACAGCTATGTGGCCATCTGCAG < 41bp 0.504242819553393 0.757454839551749 0.10640019 0.19811106 prediction 0.506424039996711 Functional Gain - OR10A5 ENSG00000166363 CDS Human protein_coding chr11:6867279 chr11:6867280 nonsynonymous SNV 0.987 3 22 hm5C_associated_SNPs_107712 0 0 0 0 0 unknown 0.500231643905281 0.50023164392109 0 3.16173753844851e-11 hm5C_site_60857 DeepMRMD:0;iRNA_m5C:3.16173753844851e-11 60858 chr22 44322843 44322843 1 + T C rs147412464 44322841 + 44322821 44322861 41 CTCTGCAGGTCCTCTCAGATCTTGTGCGGAAGGCCAGGAGT CTCTGCAGGTCCTCTCAGATCTCGTGCGGAAGGCCAGGAGT < 41bp 0.526230702105507 0.779439872741746 0.46765822 0.7275839 prediction 0.506418341272477 Functional Gain - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44322841 chr22:44322843 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_107713 1 0 1 0 2 cytosol 0.500231643920799 0.500231598376001 0.4551678 0 hm5C_site_60858 DeepMRMD:0.4551678;iRNA_m5C:0 Susceptibility to Nonalcoholic Fatty Liver Disease Susceptibility to Nonalcoholic Fatty Liver Disease 60859 chr17 78055787 78055787 1 + T C STAD 78055785 + 78055765 78055805 41 CGGGAGAAGCTGCAGGAGCACATGACCTCCAACAAGACCAC CGGGAGAAGCTGCAGGAGCACACGACCTCCAACAAGACCAC < 41bp 0.557786851088039 0.81099220092679 0.07913834 0.099318445 prediction 0.506410699677502 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78055785 chr17:78055787 nonsynonymous SNV 0.950 0 23 hm5C_associated_SNPs_107714 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60859 DeepMRMD:0;iRNA_m5C:0 60860 chr6 36927113 36927113 1 + C A rs144353254 36927112 + 36927092 36927132 41 CTCAGCGCCGCCACCTGCAGCCCAGGCCAGATGTGCGGCCA CTCAGCGCCGCCACCTGCAGCACAGGCCAGATGTGCGGCCA < 41bp 0.501673531594426 0.754869992512395 0.100462765 0.15491998 prediction 0.506392921835938 Functional Gain - PI16 ENSG00000164530 CDS Human protein_coding chr6:36927112 chr6:36927113 nonsynonymous SNV 0.150 1 22 hm5C_associated_SNPs_107715 0 0 0 0 1 exosome 0.500230223655213 0.500231787666946 0 3.12802346602581e-06 hm5C_site_60860 DeepMRMD:0;iRNA_m5C:3.12802346602581e-06 60861 chr12 55714602 55714602 1 + C A SKCM 55714598 + 55714578 55714618 41 CATATTAGAAATTTCGTTCACAACCGTCAGTATACCCAAGT CATATTAGAAATTTCGTTCACAACAGTCAGTATACCCAAGT < 41bp 0.377485262400566 0.753193000756762 0.06349981 0.17620891 prediction 0.506386001513524 Functional Gain - OR6C1 ENSG00000205330 CDS Human protein_coding chr12:55714598 chr12:55714602 synonymous SNV . 0 25 hm5C_associated_SNPs_107716 0 0 0 0 0 unknown 0.500231643972464 0.500231669956482 0 5.19680367627728e-08 hm5C_site_60861 DeepMRMD:0;iRNA_m5C:5.19680367627728e-08 60862 chr4 89527178 89527178 1 + T C UCEC 89527176 + 89527156 89527196 41 ACACCAAGGGGCAACTGGGCCATGAGAGGGAAGGAAACAAG ACACCAAGGGGCAACTGGGCCACGAGAGGGAAGGAAACAAG < 41bp 0.55473769636071 0.807926612404895 0.37092024 0.33754855 prediction 0.506377832088371 Functional Gain - HERC3 ENSG00000138641 CDS Human protein_coding chr4:89527176 chr4:89527178 synonymous SNV . 0 23 hm5C_associated_SNPs_107717 0 0 0 0 1 Ribosome 0.500231643921975 0.500231644346278 0 8.48606740433411e-10 hm5C_site_60862 DeepMRMD:0;iRNA_m5C:8.48606740433411e-10 60863 chr12 96255061 96255061 1 + T C UCEC 96255059 + 96255039 96255079 41 CTGGTATCTGTAGATGGCTACATGAACATGCAGGTAAGCTA CTGGTATCTGTAGATGGCTACACGAACATGCAGGTAAGCTA < 41bp 0.555457255362936 0.808646105274842 0.2981305 0.111097425 prediction 0.506377699823811 Functional Gain - SNRPF ENSG00000139343 CDS Human protein_coding chr12:96255059 chr12:96255061 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107718 0 0 1 0 1 Ribosome 0.50023164390748 0.500231643920931 0 2.69029243327168e-11 hm5C_site_60863 DeepMRMD:0;iRNA_m5C:2.69029243327168e-11 60864 chr11 55798631 55798631 1 + T A rs74669373 55798627 + 55798607 55798647 41 TCTCCACTTGTGCTTCCCACCTCATAGCAGTCACCTTATTC TCTCCACTTGTGCTTCCCACCTCAAAGCAGTCACCTTATTC < 41bp 0.43628748803014 0.75318741046412 0.015515327 0.03257391 prediction 0.506374820928241 Functional Gain - OR5AS1 ENSG00000181785 CDS Human protein_coding chr11:55798627 chr11:55798631 nonsynonymous SNV 0.125 1 25 hm5C_associated_SNPs_107719 0 0 0 0 0 unknown 0.500231649492781 0.500231643921102 0 0 hm5C_site_60864 DeepMRMD:0;iRNA_m5C:0 60865 chr11 70200478 70200478 1 + C T HNSC 70200477 + 70200457 70200497 41 TGAAACCTCCCCGCCTTCCTCCCCGAGAGCCCTTCGGTTAG TGAAACCTCCCCGCCTTCCTCTCCGAGAGCCCTTCGGTTAG < 41bp 0.517411423297265 0.770597963724372 0.30295506 0.86570156 prediction 0.506373080854213 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70200477 chr11:70200478 synonymous SNV . 0 22 hm5C_associated_SNPs_107720 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.73140312 0 hm5C_site_60865 DeepMRMD:0.73140312;iRNA_m5C:0 60866 chr3 9711141 9711141 1 + T A rs189614064 9711137 + 9711117 9711157 41 GGGTGCAGATGATGCCTGGGCAGATGTGGAGGACGTCACGG GGGTGCAGATGATGCCTGGGCAGAAGTGGAGGACGTCACGG < 41bp 0.594817838173022 0.848000900197622 0.8852225 0.7935111 prediction 0.506366124049201 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9711137 chr3:9711141 nonsynonymous SNV 0.575 0 25 hm5C_associated_SNPs_107721 0 0 1 0 2 Ribosome 0.500231639784554 0.500231633671572 0 0 hm5C_site_60866 DeepMRMD:0;iRNA_m5C:0 60867 chr7 97363054 97363054 1 + T G COAD 97363052 + 97363032 97363072 41 CAGGAGGAACTGCCGGAGCCCTTTGAGCATCTTCTGCAGAG CAGGAGGAACTGCCGGAGCCCTGTGAGCATCTTCTGCAGAG < 41bp 0.414682872689933 0.753182853761293 0.107014745 0.12776282 prediction 0.506365707522587 Functional Gain - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97363052 chr7:97363054 nonsynonymous SNV 0.996 4 23 hm5C_associated_SNPs_107722 0 0 0 0 2 exosome 0.500231643921092 0.500231643921002 0 0 hm5C_site_60867 DeepMRMD:0;iRNA_m5C:0 60868 chr7 143421548 143421548 1 + C G rs557106200 143421547 + 143421527 143421567 41 AGGAGCAGGGGTGTGTGGGGCCCCATCCATGAGCTGGGCCA AGGAGCAGGGGTGTGTGGGGCGCCATCCATGAGCTGGGCCA < 41bp 0.454147379338436 0.753181351412569 0.39229184 0.58350515 prediction 0.506362702825138 Functional Gain - TCAF2 ENSG00000170379 CDS Human protein_coding chr7:143421547 chr7:143421548 nonsynonymous SNV 0.988 0 22 hm5C_associated_SNPs_107723 0 0 0 0 1 nucleolus 0.500231643921686 0.500231643921231 0.1670103 0 hm5C_site_60868 DeepMRMD:0.1670103;iRNA_m5C:0 60869 chrX 102968670 102968670 1 + C G LUSC 102968669 + 102968649 102968689 41 CTACTGAGTGGATTTTCAACCCCTATCGATTGCCTGCTCTT CTACTGAGTGGATTTTCAACCGCTATCGATTGCCTGCTCTT < 41bp 0.447459338137546 0.753167730734961 0.04725015 0.08069691 prediction 0.506335461469921 Functional Gain - TMEM31 ENSG00000179363 CDS Human protein_coding chrX:102968669 chrX:102968670 nonsynonymous SNV 0.036 1 22 hm5C_associated_SNPs_107724 0 0 0 0 0 exosome 0.500231643909522 0.500231647199835 0 6.58062671021753e-09 hm5C_site_60869 DeepMRMD:0;iRNA_m5C:6.58062671021753e-09 60870 chr15 76629156 76629156 1 + C G rs548934477 76629155 + 76629135 76629175 41 AGGAGTTAGTTAGCAAAGAGCCGAGGCCGGGCGCGCGACCC AGGAGTTAGTTAGCAAAGAGCGGAGGCCGGGCGCGCGACCC < 41bp 0.583343157513133 0.836505799829488 0.6816536 0.89762723 prediction 0.506325284632711 Functional Gain - ISL2 ENSG00000159556 UTR5 Human protein_coding chr15:76629155 chr15:76629156 . . 0 22 hm5C_associated_SNPs_107725 0 0 1 0 0 Cytosol 0.500231643922115 0.500231643921092 0.43194726 0 hm5C_site_60870 DeepMRMD:0.43194726;iRNA_m5C:0 60871 chr1 46976759 46976759 1 + C T BLCA 46976758 + 46976738 46976778 41 CCAGCTGGACACTGAGCAGCCCCCACGTCTGCCTGGCAGCG CCAGCTGGACACTGAGCAGCCTCCACGTCTGCCTGGCAGCG < 41bp 0.527894295155033 0.781052732667842 0.21004978 0.9401636 prediction 0.506316875025619 Functional Gain - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976758 chr1:46976759 synonymous SNV . 0 22 hm5C_associated_SNPs_107726 0 0 0 0 0 nucleolus 0.500231643900685 0.500231633193343 0.8803272 0 hm5C_site_60871 DeepMRMD:0.8803272;iRNA_m5C:0 60872 chr12 52309905 52309905 1 + C A LUSC 52309901 + 52309881 52309921 41 GGGCACCAAGCGGTACATGGCACCCGAGGTGCTGGACGAGC GGGCACCAAGCGGTACATGGCACCAGAGGTGCTGGACGAGC < 41bp 0.318545600971719 0.753154338243328 0.1450026 0.24478137 prediction 0.506308676486656 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309901 chr12:52309905 synonymous SNV . 0 25 hm5C_associated_SNPs_107727 0 0 0 0 1 Endoplasmic reticulum 0.500231841147256 0.500231619774444 0 0 hm5C_site_60872 DeepMRMD:0;iRNA_m5C:0 60873 chr1 248343508 248343508 1 + T A ACC 248343504 + 248343484 248343524 41 TGTCCCTCATGGACCTCATGCTCATCTGCACCACCGTACCC TGTCCCTCATGGACCTCATGCTCAACTGCACCACCGTACCC < 41bp 0.603780250500635 0.856929467910809 0.05492106 0.026584357 prediction 0.506298434820348 Functional Gain - OR2M2 ENSG00000198601 CDS Human protein_coding chr1:248343504 chr1:248343508 nonsynonymous SNV 0.021 1 25 hm5C_associated_SNPs_107728 0 0 0 0 0 exosome 0.500231644219643 0.500231643921093 0 0 hm5C_site_60873 DeepMRMD:0;iRNA_m5C:0 60874 chrX 117959292 117959292 1 + C A UCEC 117959291 + 117959271 117959311 41 GCCCATTCCATGCTGAGGTCCCTGGGGAGAAGTCTCGGTCC GCCCATTCCATGCTGAGGTCCATGGGGAGAAGTCTCGGTCC < 41bp 0.504263777429404 0.757411477082024 0.72835296 0.73627687 prediction 0.506295399305241 Functional Gain - ZCCHC12 ENSG00000174460 CDS Human protein_coding chrX:117959291 chrX:117959292 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107729 0 0 0 0 0 exosome 0.500231643921092 0.50023164392109 0.0158478199999998 0 hm5C_site_60874 DeepMRMD:0.0158478199999998;iRNA_m5C:0 60875 chr1 117618146 117618146 1 + C G ACC 117618145 + 117618125 117618165 41 AGCCTGCCTCAGGGGCATTTCCAAGAGCGGCCGGAGACCCA AGCCTGCCTCAGGGGCATTTCGAAGAGCGGCCGGAGACCCA < 41bp 0.445806916058223 0.753146584705266 0.91311955 0.91265684 prediction 0.506293169410533 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117618145 chr1:117618146 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_107730 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643997759 0 1.533337901094e-10 hm5C_site_60875 DeepMRMD:0;iRNA_m5C:1.533337901094e-10 60876 chr16 30594536 30594536 1 + G T LUSC 30594540 - 30594520 30594560 41 ACTTCAGCTACCCTTCCCTCCTGGCCAGCCACCAGCGGGTC ACTTCAGCTACCCTTCCCTCCTGGACAGCCACCAGCGGGTC < 41bp 0.666147885900321 0.919293944765708 0.14240226 0.14445055 prediction 0.506292117730774 Functional Gain - ZNF785 ENSG00000197162 CDS Human protein_coding chr16:30594540 chr16:30594536 nonsynonymous SNV 0.007 1 25 hm5C_associated_SNPs_107731 0 0 0 0 0 Nucleus 0.500231643921106 0.500231643981555 0 1.20897514221951e-10 hm5C_site_60876 DeepMRMD:0;iRNA_m5C:1.20897514221951e-10 60877 chrX 585201 585201 1 + C G rs540696315 585197 + 585177 585217 41 AACAGAAATGGGAGGGTGGACAGGCGGGTAGGAGCGGATCA AACAGAAATGGGAGGGTGGACAGGGGGGTAGGAGCGGATCA < 41bp 0.555604167580748 0.80874636682902 0.8523409 0.906476 prediction 0.506284398496543 Functional Gain - SHOX ENSG00000185960 UTR5 Human protein_coding chrX:585197 chrX:585201 . . 0 25 hm5C_associated_SNPs_107732 0 0 0 0 0 Nucleus 0.500231643913205 0.500231643921092 0.1082702 1.57740487338742e-11 hm5C_site_60877 DeepMRMD:0.1082702;iRNA_m5C:1.57740487338742e-11 60878 chr11 7669667 7669667 1 + T C KIRP 7669665 + 7669645 7669685 41 GAGCACAGAGCGTGTGTGTGCATGGCTGGAGGACTTTGGCC GAGCACAGAGCGTGTGTGTGCACGGCTGGAGGACTTTGGCC < 41bp 0.523659112328418 0.776791678515375 0.32120195 0.32523018 prediction 0.506265132373913 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7669665 chr11:7669667 nonsynonymous SNV 0.737 4 23 hm5C_associated_SNPs_107733 0 0 1 0 1 Cytosol 0.500231644156532 0.500231644418972 0 5.2488080548585e-10 hm5C_site_60878 DeepMRMD:0;iRNA_m5C:5.2488080548585e-10 60879 chr1 158435408 158435408 1 + C G ACC 158435407 + 158435387 158435427 41 CGTCGTCCTCGGCTTCTCATCCCTGGCCAGGCTGCAGCAGC CGTCGTCCTCGGCTTCTCATCGCTGGCCAGGCTGCAGCAGC < 41bp 0.444652892466756 0.753131667632103 0.13161021 0.37253875 prediction 0.506263335264206 Functional Gain - OR10K1 ENSG00000173285 CDS Human protein_coding chr1:158435407 chr1:158435408 synonymous SNV . 0 22 hm5C_associated_SNPs_107734 0 0 0 0 0 unknown 0.500231643920754 0.50023164391995 0 0 hm5C_site_60879 DeepMRMD:0;iRNA_m5C:0 60880 chr11 73679453 73679453 1 + C T UCEC 73679452 + 73679432 73679472 41 GAGAAGCTACACCCTCGCTTCCGCAGGGAGAATGACAACCT GAGAAGCTACACCCTCGCTTCTGCAGGGAGAATGACAACCT < 41bp 0.540543200155298 0.793673165360541 0.16562593 0.09462768 prediction 0.506259930410486 Functional Gain - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73679452 chr11:73679453 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_107735 0 0 0 0 2 exosome 0.500231643920419 0.500231643920836 0 8.33777491493493e-13 hm5C_site_60880 DeepMRMD:0;iRNA_m5C:8.33777491493493e-13 60881 chr15 66332624 66332624 1 + C G rs529303660 66332623 + 66332603 66332643 41 GGAGCAGCTCAGGAGGGCTTCCTGGGTGAGGTGGCAGGTTA GGAGCAGCTCAGGAGGGCTTCGTGGGTGAGGTGGCAGGTTA < 41bp 0.54955876426223 0.802684630274052 0.8853917 0.8997245 prediction 0.506251732023643 Functional Gain - MIR4311 ENSG00000263512 ncRNA_exonic Human miRNA chr15:66332623 chr15:66332624 . . 0 22 hm5C_associated_SNPs_107736 0 0 0 0 0 unknown 0.500231643921097 0.500231643921155 0.0286656000000001 1.14797060746241e-13 hm5C_site_60881 DeepMRMD:0.0286656000000001;iRNA_m5C:1.14797060746241e-13 60882 chr13 111160463 111160463 1 + G T rs59395531 111160467 - 111160447 111160487 41 GATGGCGATGGCCGGGGCCTCACACACAGAACAGCGGCTGA GATGGCGATGGCCGGGGCCTCACAAACAGAACAGCGGCTGA < 41bp 0.664082747141755 0.91720177461444 0.11614138 0.19915342 prediction 0.506238054945371 Functional Gain - COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111160467 chr13:111160463 synonymous SNV . 0 25 hm5C_associated_SNPs_107737 1 0 0 0 1 Cytosol 0.500231662899955 0.500231643932462 0 0 hm5C_site_60882 DeepMRMD:0;iRNA_m5C:0 Porencephaly Porencephaly 60883 chr12 69140053 69140053 1 + C A rs115175079 69140049 + 69140029 69140069 41 TGTGCATGCCACTCCTGGGTCAGACGGTGAGGTCGGCGTCT TGTGCATGCCACTCCTGGGTCAGAAGGTGAGGTCGGCGTCT < 41bp 0.456201969245646 0.753112928763448 0.73810035 0.8211862 prediction 0.506225857526895 Functional Gain - SLC35E3 ENSG00000175782 UTR5 Human protein_coding chr12:69140049 chr12:69140053 . . 0 25 hm5C_associated_SNPs_107738 0 0 1 0 0 nucleolus 0.500231628434464 0.500231643920488 0.1661717 3.09720480373699e-08 hm5C_site_60883 DeepMRMD:0.1661717;iRNA_m5C:3.09720480373699e-08 60884 chr17 39845139 39845139 1 + C G rs563193891 39845135 + 39845115 39845155 41 TAAACACAGGCACCGCCCCTCTGCCCCAGTCACTGAGCCGC TAAACACAGGCACCGCCCCTCTGCGCCAGTCACTGAGCCGC < 41bp 0.528013393958612 0.781121666726546 0.16056934 0.20790514 prediction 0.506216545535869 Functional Gain - EIF1 ENSG00000173812 UTR5 Human protein_coding chr17:39845135 chr17:39845139 . . 0 25 hm5C_associated_SNPs_107739 0 0 1 2 0 Endoplasmic reticulum 0.50023164391507 0.500231684941637 0 8.20531340650632e-08 hm5C_site_60884 DeepMRMD:0;iRNA_m5C:8.20531340650632e-08 60885 chr11 55657435 55657435 1 + T A LUAD 55657431 + 55657411 55657451 41 CTTGCAGGTATGAGTCTCTGCTGCTGCAAGTGTCTGAGCCT CTTGCAGGTATGAGTCTCTGCTGCAGCAAGTGTCTGAGCCT < 41bp 0.599833866653608 0.85293595904636 0.0921042 0.29157126 prediction 0.506204184785504 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55657431 chr11:55657435 nonsynonymous SNV 0.009 0 25 hm5C_associated_SNPs_107740 0 0 0 0 2 unknown 0.50023152973735 0.500221801680636 0 0 hm5C_site_60885 DeepMRMD:0;iRNA_m5C:0 60886 chr21 43543040 43543040 1 + C T SKCM 43543039 + 43543019 43543059 41 TGCAAGGCACCAGCCCCACCCCCCAAGGCCTGCCCCAGCGG TGCAAGGCACCAGCCCCACCCTCCAAGGCCTGCCCCAGCGG < 41bp 0.527534435285485 0.780634706123313 0.21683434 0.96637297 prediction 0.506200541675656 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43543039 chr21:43543040 nonsynonymous SNV 0.001 1 22 hm5C_associated_SNPs_107741 0 0 0 0 1 exosome 0.500231643895727 0.500231643567247 0.93274594 0 hm5C_site_60886 DeepMRMD:0.93274594;iRNA_m5C:0 60887 chrX 140994913 140994913 1 + C A GBM 140994909 + 140994889 140994929 41 AGCCCTCCTCAGGGGGAGGACTCCCTGTCTCCTCACTACTT AGCCCTCCTCAGGGGGAGGACTCCATGTCTCCTCACTACTT < 41bp 0.328505040771083 0.753098828481704 0.40147424 0.9566786 prediction 0.506197656963408 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140994909 chrX:140994913 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_107742 0 0 0 0 0 exosome 0.500231643920892 0.500231642753689 0.9133572 0 hm5C_site_60887 DeepMRMD:0.9133572;iRNA_m5C:0 60888 chr9 92279909 92279909 1 + T A rs149429012 92279905 + 92279885 92279925 41 CTCTGGGTCACGCTTGGGGACACATGAAGGATACGCCCTCC CTCTGGGTCACGCTTGGGGACACAAGAAGGATACGCCCTCC < 41bp 0.491272631467127 0.753098343647617 0.28325647 0.23555803 prediction 0.506196687295235 Functional Gain - UNQ6494 ENSG00000130222;ENSG00000237372 intergenic Human other chr9:92279905 chr9:92279909 . . 0 25 hm5C_associated_SNPs_107743 0 0 0 1 1 unknown 0.500231643922156 0.500223575049437 0 0 hm5C_site_60888 DeepMRMD:0;iRNA_m5C:0 60889 chr6 43127577 43127577 1 + C A rs55921533 43127573 + 43127553 43127593 41 GGTGCCGCTGCGCTGGATGTCCCCCGAGGCCATCCTGGAGG GGTGCCGCTGCGCTGGATGTCCCCAGAGGCCATCCTGGAGG < 41bp 0.334314370654201 0.753096169356422 0.1438357 0.43647283 prediction 0.506192338712845 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43127573 chr6:43127577 synonymous SNV . 0 25 hm5C_associated_SNPs_107744 0 0 1 0 1 Endoplasmic reticulum 0.500231647110169 0.500231655545397 0 1.68704554770471e-08 hm5C_site_60889 DeepMRMD:0;iRNA_m5C:1.68704554770471e-08 60890 chr10 27444284 27444284 1 + T G rs531122141 27444282 + 27444262 27444302 41 GCGGCGTGGGCGGAGCCTCACTTTGAACCCAGTTGGCGGGA GCGGCGTGGGCGGAGCCTCACTGTGAACCCAGTTGGCGGGA < 41bp 0.534399684765221 0.78749413501114 0.029722333 0.069505244 prediction 0.506188900491839 Functional Gain - MASTL ENSG00000120539 UTR5 Human protein_coding chr10:27444282 chr10:27444284 . . 0 23 hm5C_associated_SNPs_107745 0 0 1 0 0 Cytosol 0.500231643960406 0.500231643923563 0 0 hm5C_site_60890 DeepMRMD:0;iRNA_m5C:0 60891 chr5 54461579 54461579 1 + T A rs138949806 54461575 + 54461555 54461595 41 AGATGAGTGTGTCAGAAAGCCTGCTCCTACCTCTCGCCAGC AGATGAGTGTGTCAGAAAGCCTGCACCTACCTCTCGCCAGC < 41bp 0.576240618785223 0.829331460844833 0.08156997 0.0893417 prediction 0.506181684119221 Functional Gain - GPX8 ENSG00000164294 UTR3 Human protein_coding chr5:54461575 chr5:54461579 . . 0 25 hm5C_associated_SNPs_107746 0 0 1 0 0 Endoplasmic reticulum 0.500231663673393 0.500231679905066 0 3.2463345345235e-08 hm5C_site_60891 DeepMRMD:0;iRNA_m5C:3.2463345345235e-08 60892 chr4 89311943 89311943 1 + C A LUAD 89311939 + 89311919 89311959 41 TCAGGTGGCTGCCGGAGGGGCTCACAGCTTTGCCCTGTCTC TCAGGTGGCTGCCGGAGGGGCTCAAAGCTTTGCCCTGTCTC < 41bp 0.324810060917549 0.753088805010732 0.22046185 0.58699155 prediction 0.506177610021465 Functional Gain - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89311939 chr4:89311943 nonsynonymous SNV 0.967 4 25 hm5C_associated_SNPs_107747 0 0 0 0 1 Cytosol 0.500231643921489 0.500231643921092 0.1739831 0 hm5C_site_60892 DeepMRMD:0.1739831;iRNA_m5C:0 60893 chr6 147648354 147648354 1 + T G COAD 147648351 + 147648331 147648371 41 GGCACTATTGAATTATATGGCTCTAATGATCCTTATCGGAG GGCACTATTGAATTATATGGCTCGAATGATCCTTATCGGAG < 41bp 0.395695883710359 0.753085341998832 0.30672774 0.03254676 prediction 0.506170683997665 Functional Gain - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147648351 chr6:147648354 synonymous SNV . 0 24 hm5C_associated_SNPs_107748 0 0 1 0 1 Nucleus 0.500231643919791 0.500231643921091 0 2.60080845748689e-12 hm5C_site_60893 DeepMRMD:0;iRNA_m5C:2.60080845748689e-12 60894 chr1 17559377 17559377 1 + T A SKCM 17559373 + 17559353 17559393 41 CCTGGTCCCTCCAGCCTTGACTCCTTCGGCAACCTGGACGT CCTGGTCCCTCCAGCCTTGACTCCATCGGCAACCTGGACGT < 41bp 0.642187425511108 0.895271427293967 0.16620502 0.9705415 prediction 0.506168003565717 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17559373 chr1:17559377 nonsynonymous SNV 0.370 3 25 hm5C_associated_SNPs_107749 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.941083 0 hm5C_site_60894 DeepMRMD:0.941083;iRNA_m5C:0 60895 chr19 10908073 10908073 1 + C G TGCT 10908072 + 10908052 10908092 41 CCAGGACGGGGCTCTTCACCCCCGACATGGCCTTTGAAGCC CCAGGACGGGGCTCTTCACCCGCGACATGGCCTTTGAAGCC < 41bp 0.45126167189333 0.753083450165924 0.019321918 0.57913905 prediction 0.506166900331847 Functional Gain - DNM2 ENSG00000079805 CDS Human protein_coding chr19:10908072 chr19:10908073 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107750 0 0 1 0 1 Nucleus 0.500231637292868 0.5002315438687 0.1582781 0 hm5C_site_60895 DeepMRMD:0.1582781;iRNA_m5C:0 60896 chr2 11273694 11273694 1 + C A rs115108896 11273693 + 11273673 11273713 41 GTGGCGGGAGCTCCTGGAGGCCGAGCGGCGGGGCCAGCAGC GTGGCGGGAGCTCCTGGAGGCAGAGCGGCGGGGCCAGCAGC < 41bp 0.502470087533579 0.755545674541161 0.82102823 0.9251674 prediction 0.506151174015165 Functional Gain - C2orf50 ENSG00000150873 CDS Human protein_coding chr2:11273693 chr2:11273694 synonymous SNV . 0 22 hm5C_associated_SNPs_107751 0 0 0 0 1 Nucleus 0.5002316439213 0.500231643921092 0.20827834 0 hm5C_site_60896 DeepMRMD:0.20827834;iRNA_m5C:0 60897 chr11 67190856 67190856 1 + T C ESCA 67190854 + 67190834 67190874 41 TGGCTTCTGCAGCTGCACCTCGTGGAGTCAGACCCCAACCA TGGCTTCTGCAGCTGCACCTCGCGGAGTCAGACCCCAACCA < 41bp 0.499105460646194 0.753072987495844 0.6900737 0.86771005 prediction 0.506145974991688 Functional Gain - CARNS1 ENSG00000172508 CDS Human protein_coding chr11:67190854 chr11:67190856 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_107752 0 0 0 0 1 exosome 0.500231643960693 0.500231644077605 0.3552727 2.33822738948675e-10 hm5C_site_60897 DeepMRMD:0.3552727;iRNA_m5C:2.33822738948675e-10 60898 chr16 72110738 72110738 1 + C G LUAD 72110737 + 72110717 72110757 41 AAATGGAAGGCACCGAAGAGCCCTGTAGGGGTGCAGCCCAT AAATGGAAGGCACCGAAGAGCGCTGTAGGGGTGCAGCCCAT < 41bp 0.43510720178898 0.753067897356582 0.053078413 0.14008412 prediction 0.506135794713164 Functional Gain - HPR ENSG00000261701 CDS Human protein_coding chr16:72110737 chr16:72110738 nonsynonymous SNV 0.051 3 22 hm5C_associated_SNPs_107753 0 0 1 0 0 nucleus 0.500231643921092 0.500231643921064 0 0 hm5C_site_60898 DeepMRMD:0;iRNA_m5C:0 60899 chr16 28943864 28943864 1 + C A LUSC 28943863 + 28943843 28943883 41 CAACAGATGGGGGGCTTCTACCTGTGCCAGCCGGGGCCCCC CAACAGATGGGGGGCTTCTACATGTGCCAGCCGGGGCCCCC < 41bp 0.486733800840054 0.753061091957864 0.32984257 0.5898032 prediction 0.506122183915727 Functional Gain - CD19 ENSG00000177455 CDS Human protein_coding chr16:28943863 chr16:28943864 nonsynonymous SNV 0.992 3 22 hm5C_associated_SNPs_107754 0 0 0 0 1 exosome 0.500231643921092 0.500231643926716 0.1796064 1.12465592394528e-11 hm5C_site_60899 DeepMRMD:0.1796064;iRNA_m5C:1.12465592394528e-11 60900 chr14 37667138 37667138 1 + C G rs560338567 37667137 + 37667117 37667157 41 CCCCTGCGGCGCGCCGCCGCCCCGTAGGCCCCACGCGCCGC CCCCTGCGGCGCGCCGCCGCCGCGTAGGCCCCACGCGCCGC < 41bp 0.533110388827475 0.786149407686895 0.38709274 0.8351619 prediction 0.50607803771884 Functional Gain - MIPOL1 ENSG00000151338 UTR5 Human protein_coding chr14:37667137 chr14:37667138 . . 0 22 hm5C_associated_SNPs_107755 0 0 0 0 0 chromatin 0.500231643921092 0.500231643949977 0.6703238 5.77684566849257e-11 hm5C_site_60900 DeepMRMD:0.6703238;iRNA_m5C:5.77684566849257e-11 60901 chr9 137734418 137734418 1 + C A rs372857096 137734414 + 137734394 137734434 41 CCCCACGCTCTGTCCACACCCACGCGCCCCGGGAGCGGGGC CCCCACGCTCTGTCCACACCCACGAGCCCCGGGAGCGGGGC < 41bp 0.396001429986919 0.753029062820737 0.25254667 0.2600378 prediction 0.506058125641475 Functional Gain - LOC101448202 ENSG00000130635 UTR3 Human protein_coding chr9:137734414 chr9:137734418 . . 0 25 hm5C_associated_SNPs_107756 0 0 0 0 0 unknown 0.500231643893727 0.500231643709647 0 0 hm5C_site_60901 DeepMRMD:0;iRNA_m5C:0 60902 chrX 138530574 138530574 1 + C G rs779820521 138530570 + 138530550 138530590 41 CATCTGGACTTGTTCCAGCCCAGCCCACCGGGTGACATCAC CATCTGGACTTGTTCCAGCCCAGCGCACCGGGTGACATCAC < 41bp 0.573750753712025 0.826778583052924 0.10819611 0.13543451 prediction 0.506055658681798 Functional Gain - SRD5A1P1 ENSG00000232549 downstream Human processed_pseudogene chrX:138530570 chrX:138530574 . . 0 25 hm5C_associated_SNPs_107757 0 0 0 0 0 unknown 0.500231643908833 0.500231643920577 0 2.34883223981797e-11 hm5C_site_60902 DeepMRMD:0;iRNA_m5C:2.34883223981797e-11 60903 chr17 56280504 56280504 1 + C A LUAD 56280503 + 56280483 56280523 41 CGGAATTTGGCACAGCTTAGCCGGGTGCTGAAAAACCAGGA CGGAATTTGGCACAGCTTAGCAGGGTGCTGAAAAACCAGGA < 41bp 0.49111912031413 0.753023140382148 0.8980423 0.9110309 prediction 0.506046280764296 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56280503 chr17:56280504 synonymous SNV . 0 22 hm5C_associated_SNPs_107758 0 0 0 0 0 chromatin 0.500231643925111 0.500231643921105 0.0259772 0 hm5C_site_60903 DeepMRMD:0.0259772;iRNA_m5C:0 60904 chr4 184431707 184431707 1 + T C COAD 184431705 + 184431685 184431725 41 TTCCAGCCAACCAGAAAGATCTTCAAGAAGACCCCGCAGGC TTCCAGCCAACCAGAAAGATCTCCAAGAAGACCCCGCAGGC < 41bp 0.567531968108233 0.820548171931069 0.053411186 0.9489715 prediction 0.506032407645673 Functional Gain - ING2 ENSG00000168556 CDS Human protein_coding chr4:184431705 chr4:184431707 nonsynonymous SNV 0.996 0 23 hm5C_associated_SNPs_107759 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.897943 0 hm5C_site_60904 DeepMRMD:0.897943;iRNA_m5C:0 60905 chr19 5915155 5915155 1 + C A rs201938368 5915151 + 5915131 5915171 41 TTCGACTCCTCTGAGAAGGACGGGCAGGTGGGTGGCTGCGC TTCGACTCCTCTGAGAAGGACGGGAAGGTGGGTGGCTGCGC < 41bp 0.661658926883192 0.914672655380403 0.6350848 0.8440541 prediction 0.506027456994421 Functional Gain - CAPS ENSG00000105519 CDS Human protein_coding chr19:5915151 chr19:5915155 nonsynonymous SNV 0.983 1 25 hm5C_associated_SNPs_107760 0 0 0 0 1 chromatin 0.500231645726821 0.500231644218435 0.4179386 0 hm5C_site_60905 DeepMRMD:0.4179386;iRNA_m5C:0 60906 chr14 55241680 55241680 1 + C T UCEC 55241679 + 55241659 55241699 41 TTTGGGCAATCCAACTCCCTCCCGACGGCTGGCTCTGTGGG TTTGGGCAATCCAACTCCCTCTCGACGGCTGGCTCTGTGGG < 41bp 0.486837549461902 0.753010456931416 0.11230108 0.35475957 prediction 0.506020913862832 Functional Gain - SAMD4A ENSG00000020577 CDS Human protein_coding chr14:55241679 chr14:55241680 nonsynonymous SNV 0.891 4 22 hm5C_associated_SNPs_107761 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921085 0 0 hm5C_site_60906 DeepMRMD:0;iRNA_m5C:0 60907 chr3 13655645 13655645 1 + C A rs61731211 13655644 + 13655624 13655664 41 GGTTCGCCGACCTCCAGAGCCCGCAGCTGCACCACGGAGAG GGTTCGCCGACCTCCAGAGCCAGCAGCTGCACCACGGAGAG < 41bp 0.516391199522392 0.769401116910199 0.6168443 0.9217262 prediction 0.506019834775616 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13655644 chr3:13655645 synonymous SNV . 0 22 hm5C_associated_SNPs_107762 0 0 0 0 1 Endoplasmic reticulum 0.500231701628542 0.500231653696698 0.6097638 0 hm5C_site_60907 DeepMRMD:0.6097638;iRNA_m5C:0 60908 chr17 27580752 27580752 1 + T C LUSC 27580750 + 27580730 27580770 41 GACTACCCCTCCTTGCAAGCCATGGGCTGGTTCAACAACGA GACTACCCCTCCTTGCAAGCCACGGGCTGGTTCAACAACGA < 41bp 0.541046341038827 0.794050491525701 0.097091615 0.19344944 prediction 0.506008300973749 Functional Gain - CRYBA1 ENSG00000108255 CDS Human protein_coding chr17:27580750 chr17:27580752 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_107763 0 0 0 0 2 Cytosol 0.500231647024795 0.500231643210866 0 0 hm5C_site_60908 DeepMRMD:0;iRNA_m5C:0 60909 chr17 4645324 4645324 1 + T C rs3826517 4645322 + 4645302 4645342 41 CCCTTCGTGCTCGAACCTGCCATGTGTGTCACAGGCACAGC CCCTTCGTGCTCGAACCTGCCACGTGTGTCACAGGCACAGC < 41bp 0.53492778937894 0.787930350508547 0.18828142 0.30189925 prediction 0.506005122259214 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4645322 chr17:4645324 synonymous SNV . 0 23 hm5C_associated_SNPs_107764 0 0 0 0 1 Cytosol 0.500232622271207 0.500243214971173 0 2.11853999330103e-05 hm5C_site_60909 DeepMRMD:0;iRNA_m5C:2.11853999330103e-05 60910 chr17 61904820 61904820 1 + G C rs374477572 61904821 - 61904801 61904841 41 TCAGCAGAGACCGCCGGCATCCGAGCCGTCTTGGCGCGCAA TCAGCAGAGACCGCCGGCATCGGAGCCGTCTTGGCGCGCAA < 41bp 0.584466402334817 0.837468173371643 0.8581773 0.91948515 prediction 0.506003542073652 Functional Gain - FTSJ3;PSMC5 ENSG00000087191;ENSG00000108592 UTR5 Human other chr17:61904821 chr17:61904820 . . 0 22 hm5C_associated_SNPs_107765 0 0 0 0 0 unknown 0.500231735611524 0.500231645299491 0.1226157 0 hm5C_site_60910 DeepMRMD:0.1226157;iRNA_m5C:0 60911 chr22 41076992 41076992 1 + T C UCEC 41076990 + 41076970 41077010 41 GGGAGCATCTCCTACATCAACATCATCATGCCTTCGGTGTT GGGAGCATCTCCTACATCAACACCATCATGCCTTCGGTGTT < 41bp 0.524349042062946 0.777348826702478 0.005533844 0.005432695 prediction 0.505999569279064 Functional Gain - MCHR1 ENSG00000128285 CDS Human protein_coding chr22:41076990 chr22:41076992 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_107766 0 0 0 0 1 exosome 0.500231643921138 0.500231643923718 0 5.15876230622325e-12 hm5C_site_60911 DeepMRMD:0;iRNA_m5C:5.15876230622325e-12 60912 chr3 38151608 38151608 1 + C A COAD 38151604 + 38151584 38151624 41 TTTCAGCACAGAGCAGTGGCCAGGCCACCCAAAGGAGCTCC TTTCAGCACAGAGCAGTGGCCAGGACACCCAAAGGAGCTCC < 41bp 0.359786934853156 0.752999391083285 0.3697924 0.3511241 prediction 0.505998782166569 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38151604 chr3:38151608 synonymous SNV . 0 25 hm5C_associated_SNPs_107767 0 0 0 0 1 chromatin 0.500231643924171 0.500231643921093 0 0 hm5C_site_60912 DeepMRMD:0;iRNA_m5C:0 60913 chr9 125512586 125512586 1 + C A LUSC 125512582 + 125512562 125512602 41 CTATTGGGTTCTTGCAGCATCTCCCACCTACATTCCCTGTT CTATTGGGTTCTTGCAGCATCTCCAACCTACATTCCCTGTT < 41bp 0.336032679047803 0.752994272519103 0.019768 0.95087355 prediction 0.505988545038205 Functional Gain - OR1L6 ENSG00000171459 CDS Human protein_coding chr9:125512582 chr9:125512586 nonsynonymous SNV 0.661 2 25 hm5C_associated_SNPs_107768 0 0 0 0 0 unknown 0.500231648876957 0.500231644336321 0.9017471 0 hm5C_site_60913 DeepMRMD:0.9017471;iRNA_m5C:0 60914 chr17 61615786 61615786 1 + C T UCEC 61615785 + 61615765 61615805 41 TTGCAGGTGCTGAAGGGCTTCCCCGAGTGCCTGCAGGCTGA TTGCAGGTGCTGAAGGGCTTCTCCGAGTGCCTGCAGGCTGA < 41bp 0.507181626436958 0.760157636857569 0.39126813 0.87655306 prediction 0.505952020841223 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61615785 chr17:61615786 nonsynonymous SNV 0.987 5 22 hm5C_associated_SNPs_107769 0 0 0 0 1 unknown 0.500231643921092 0.500231643921093 0.75310612 2.22044604925031e-16 hm5C_site_60914 DeepMRMD:0.75310612;iRNA_m5C:2.22044604925031e-16 60915 chr12 5603935 5603935 1 + C G rs10849277 5603931 + 5603911 5603951 41 GGAGATCAAAACGGGCAACTCTCCCGTCAAACAATATTTTT GGAGATCAAAACGGGCAACTCTCCGGTCAAACAATATTTTT < 41bp 0.55111266472233 0.804083162653986 0.07950634 0.118534654 prediction 0.505940995863313 Functional Gain - NTF3 ENSG00000185652 CDS Human protein_coding chr12:5603931 chr12:5603935 synonymous SNV . 0 25 hm5C_associated_SNPs_107770 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60915 DeepMRMD:0;iRNA_m5C:0 60916 chr21 27088675 27088675 1 + C G rs76149981 27088674 + 27088654 27088694 41 AAGCAAATCCCCAGGATTCACCGAACAAATGGATTAAGCAC AAGCAAATCCCCAGGATTCACGGAACAAATGGATTAAGCAC < 41bp 0.535488861685101 0.788457551867137 0.03171572 0.0966962 prediction 0.505937380364073 Functional Gain - JAM2 ENSG00000154721 UTR3 Human protein_coding chr21:27088674 chr21:27088675 . . 0 22 hm5C_associated_SNPs_107771 0 0 0 0 0 nucleus 0.500231656594534 0.500231643852367 0 0 hm5C_site_60916 DeepMRMD:0;iRNA_m5C:0 60917 chr19 4409533 4409533 1 + T G BLCA 4409531 + 4409511 4409551 41 ATGGTGGTCTTGCAGGACATCTTGGCTGTGAGACCACCGCA ATGGTGGTCTTGCAGGACATCTGGGCTGTGAGACCACCGCA < 41bp 0.632188641985209 0.885149262566217 0.061466694 0.8652793 prediction 0.505921241162017 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4409531 chr19:4409533 nonsynonymous SNV 0.398 3 23 hm5C_associated_SNPs_107772 0 0 1 0 0 Nucleus 0.50023157900993 0.500231421078206 0.7305586 0 hm5C_site_60917 DeepMRMD:0.7305586;iRNA_m5C:0 60918 chr6 7390077 7390077 1 + C G rs6597266 7390073 + 7390053 7390093 41 GGGGTGGCAGGGTGGTGGATCTGTCGGTCCCGTTTTCCCGT GGGGTGGCAGGGTGGTGGATCTGTGGGTCCCGTTTTCCCGT < 41bp 0.557788389697562 0.810742362723936 0.20599797 0.17874846 prediction 0.505907946052748 Functional Gain - RIOK1 ENSG00000124784 UTR5 Human protein_coding chr6:7390073 chr6:7390077 . . 0 25 hm5C_associated_SNPs_107773 0 0 1 0 0 Ribosome 0.500231644724158 0.500231640294359 0 0 hm5C_site_60918 DeepMRMD:0;iRNA_m5C:0 60919 chr11 55890015 55890015 1 + T A COAD 55890011 + 55889991 55890031 41 TGATAATCCGCCTGGACCTCCAGCTTCACACTCCCATGTAT TGATAATCCGCCTGGACCTCCAGCATCACACTCCCATGTAT < 41bp 0.588111656305486 0.841060884402921 0.041298807 0.026085705 prediction 0.505898456194869 Functional Gain - OR8H3 ENSG00000181761 CDS Human protein_coding chr11:55890011 chr11:55890015 nonsynonymous SNV 0.185 4 25 hm5C_associated_SNPs_107774 0 0 0 0 0 unknown 0.500231643922013 0.500231643921951 0 0 hm5C_site_60919 DeepMRMD:0;iRNA_m5C:0 60920 chrX 46898410 46898410 1 + C A UCEC 46898406 + 46898386 46898426 41 CACGAAGATCTCCCACATCCCACCCAGTCGGTGGGCCTTAG CACGAAGATCTCCCACATCCCACCAAGTCGGTGGGCCTTAG < 41bp 0.317317262328238 0.752946569106912 0.0060387254 0.05736512 prediction 0.505893138213825 Functional Gain - JADE3 ENSG00000102221 CDS Human protein_coding chrX:46898406 chrX:46898410 synonymous SNV . 0 25 hm5C_associated_SNPs_107775 0 0 0 0 2 chromatin 0.500231644565227 0.500231807022436 0 3.24914419591593e-07 hm5C_site_60920 DeepMRMD:0;iRNA_m5C:3.24914419591593e-07 60921 chr3 112993283 112993283 1 + C A LUAD 112993279 + 112993259 112993299 41 TACTGGCACACCTCCTGTATCACCCTCCAAACTCGGCAACC TACTGGCACACCTCCTGTATCACCATCCAAACTCGGCAACC < 41bp 0.329670725096691 0.752944386820675 0.0115197 0.040935457 prediction 0.50588877364135 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112993279 chr3:112993283 synonymous SNV . 0 25 hm5C_associated_SNPs_107776 0 0 0 0 1 nucleoplasm 0.50023164389046 0.500231643921092 0 6.12638828556555e-11 hm5C_site_60921 DeepMRMD:0;iRNA_m5C:6.12638828556555e-11 60922 chr3 130368298 130368298 1 + C G LUAD 130368297 + 130368277 130368317 41 ATTTTTCAGCAGCGGTCAGTCCGCGGATGCCCACTCCATCA ATTTTTCAGCAGCGGTCAGTCGGCGGATGCCCACTCCATCA < 41bp 0.589796428904967 0.842737180476279 0.15468135 0.8917476 prediction 0.505881503142623 Functional Gain - COL6A6 ENSG00000206384 CDS Human protein_coding chr3:130368297 chr3:130368298 synonymous SNV . 0 22 hm5C_associated_SNPs_107777 0 0 0 0 0 exosome 0.500231632906025 0.500231643881261 0.7834952 2.1950473438892e-08 hm5C_site_60922 DeepMRMD:0.7834952;iRNA_m5C:2.1950473438892e-08 60923 chr19 57168201 57168201 1 + T A rs372528474 57168197 + 57168177 57168217 41 ACACAGAATGTGGCCTATAACACATCTGCTTCCAAAACTTT ACACAGAATGTGGCCTATAACACAACTGCTTCCAAAACTTT < 41bp 0.496654917035951 0.752938862728416 0.11071339 0.094956666 prediction 0.505877725456833 Functional Gain - SMIM17 ENSG00000268182;ENSG00000127903 intergenic Human other chr19:57168197 chr19:57168201 . . 0 25 hm5C_associated_SNPs_107778 0 0 1 0 0 exosome 0.500231643921301 0.500231643934182 0 2.57613930187972e-11 hm5C_site_60923 DeepMRMD:0;iRNA_m5C:2.57613930187972e-11 60924 chrX 48545194 48545194 1 + T G GBM 48545192 + 48545172 48545212 41 CCTCCAGTGGGTCCGCTCTCCCTGGGGCTGGCGACAGTGGA CCTCCAGTGGGTCCGCTCTCCCGGGGGCTGGCGACAGTGGA < 41bp 0.387009633801279 0.752920465188355 0.27824804 0.94417065 prediction 0.505840930376711 Functional Gain - WAS ENSG00000015285 CDS Human protein_coding chrX:48545192 chrX:48545194 nonsynonymous SNV 0.623 3 23 hm5C_associated_SNPs_107779 0 0 1 0 1 Endoplasmic reticulum 0.500231644038878 0.500231642114597 0.8883413 0 hm5C_site_60924 DeepMRMD:0.8883413;iRNA_m5C:0 60925 chr1 27158956 27158956 1 + C A rs190999121 27158952 + 27158932 27158972 41 TTCTAGCTGTCCCTACCTGGCTCGCAAGCTGACCCTTGCCA TTCTAGCTGTCCCTACCTGGCTCGAAAGCTGACCCTTGCCA < 41bp 0.326001836180378 0.752920242272849 0.041399002 0.14431876 prediction 0.505840484545698 Functional Gain - ZDHHC18 ENSG00000204160 CDS Human protein_coding chr1:27158952 chr1:27158956 synonymous SNV . 0 25 hm5C_associated_SNPs_107780 0 0 1 0 1 Ribosome 0.500231643943294 0.500231643921221 0 0 hm5C_site_60925 DeepMRMD:0;iRNA_m5C:0 60926 chr13 37007295 37007295 1 + C T SKCM 37007294 + 37007274 37007314 41 AGCCCCGCTGGGCCAGGATCCCCCGCAGAGGACAGTGCTAG AGCCCCGCTGGGCCAGGATCCTCCGCAGAGGACAGTGCTAG < 41bp 0.506080658637355 0.759000894295673 0.17714739 0.2716173 prediction 0.505840471316636 Functional Gain - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37007294 chr13:37007295 synonymous SNV . 0 22 hm5C_associated_SNPs_107781 0 0 0 0 1 exosome 0.50023164392104 0.500231643920534 0 0 hm5C_site_60926 DeepMRMD:0;iRNA_m5C:0 60927 chr12 71898435 71898435 1 + C T SKCM 71898434 + 71898414 71898454 41 TCAGTCAGCTGCTCCCGAATCCCCTGCCCAGTCTCCGCTTC TCAGTCAGCTGCTCCCGAATCTCCTGCCCAGTCTCCGCTTC < 41bp 0.505362471694633 0.758270133901419 0.093535185 0.108474046 prediction 0.505815324413571 Functional Gain - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71898434 chr12:71898435 nonsynonymous SNV 0.064 0 22 hm5C_associated_SNPs_107782 0 0 1 0 2 Nucleus 0.500231644623617 0.500231644002129 0 0 hm5C_site_60927 DeepMRMD:0;iRNA_m5C:0 60928 chr9 110081110 110081110 1 + C A UCEC 110081109 + 110081089 110081129 41 CGAGAGCAAGTAATTGCAGCCCTGAGAGCCAGTTTCAACAA CGAGAGCAAGTAATTGCAGCCATGAGAGCCAGTTTCAACAA < 41bp 0.49701786217255 0.752901848017247 0.02123189 0.20414817 prediction 0.505803696034495 Functional Gain - RAD23B ENSG00000119318 CDS Human protein_coding chr9:110081109 chr9:110081110 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_107783 0 0 1 0 2 Ribosome 0.500140013976424 0.50023310636693 0 0.000186184781012066 hm5C_site_60928 DeepMRMD:0;iRNA_m5C:0.000186184781012066 60929 chr19 31025796 31025796 1 + C A LUAD 31025792 + 31025772 31025812 41 GGAGATCTGCCGGCGTCCAGCAACCAGCGCTGCTTCGCGAC GGAGATCTGCCGGCGTCCAGCAACAAGCGCTGCTTCGCGAC < 41bp 0.328947497680628 0.752884391061193 0.30549332 0.3601082 prediction 0.505768782122387 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:31025792 chr19:31025796 nonsynonymous SNV 0.905 0 25 hm5C_associated_SNPs_107784 0 0 0 0 1 exosome 0.500231638422733 0.500231644507871 0 1.21702772304388e-08 hm5C_site_60929 DeepMRMD:0;iRNA_m5C:1.21702772304388e-08 60930 chr4 41984484 41984484 1 + T G SKCM 41984481 + 41984461 41984501 41 CAGCAGTCATTTGATACCAGCAGTGATGTCTTGGCCCAGCA CAGCAGTCATTTGATACCAGCAGGGATGTCTTGGCCCAGCA < 41bp 0.363212551813004 0.752879872003173 0.24630815 0.9037865 prediction 0.505759744006346 Functional Gain - DCAF4L1 ENSG00000182308 CDS Human protein_coding chr4:41984481 chr4:41984484 nonsynonymous SNV 0.327 3 24 hm5C_associated_SNPs_107785 0 0 1 0 0 Nucleus 0.500231645920642 0.500231643920558 0.807573 0 hm5C_site_60930 DeepMRMD:0.807573;iRNA_m5C:0 60931 chr19 58991638 58991638 1 + C A rs36095067 58991634 + 58991614 58991654 41 GAGGGCTTGTCTGGGGCTGCCACTCCTGCCCCCACTGTGCG GAGGGCTTGTCTGGGGCTGCCACTACTGCCCCCACTGTGCG < 41bp 0.373267183752325 0.752876942488873 0.32351887 0.35819957 prediction 0.505753884977746 Functional Gain - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58991634 chr19:58991638 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_107786 0 0 0 0 1 nucleolus 0.500231643921092 0.500231643921092 0 4.44089209850063e-16 hm5C_site_60931 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 60932 chr9 990228 990228 1 + C G LUSC 990227 + 990207 990247 41 CCAGAAAAACGGAGGCAACCCCGAGAGCCGCCCTGACAGCC CCAGAAAAACGGAGGCAACCCGGAGAGCCGCCCTGACAGCC < 41bp 0.616785954285551 0.869653664240009 0.8078056 0.9137956 prediction 0.505735419908916 Functional Gain - DMRT3 ENSG00000064218 CDS Human protein_coding chr9:990227 chr9:990228 synonymous SNV . 0 22 hm5C_associated_SNPs_107787 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.21198 0 hm5C_site_60932 DeepMRMD:0.21198;iRNA_m5C:0 60933 chr17 8215391 8215391 1 + C T COAD 8215390 + 8215370 8215410 41 TCCCTTCCTGCAGCAACACCCCCCACGCAGAAGCCCCCTCG TCCCTTCCTGCAGCAACACCCTCCACGCAGAAGCCCCCTCG < 41bp 0.533496561607431 0.786363379201106 0.029792666 0.9169477 prediction 0.50573363518735 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8215390 chr17:8215391 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107788 0 0 0 0 0 exosome 0.500231643878515 0.500231645386397 0.8338954 3.01576230654632e-09 hm5C_site_60933 DeepMRMD:0.8338954;iRNA_m5C:3.01576230654632e-09 60934 chr14 20389324 20389324 1 + C G GBM 20389320 + 20389300 20389340 41 TGTGATCTTCCTCGAGTCACCAAACTTGCCTGCCTGGACTC TGTGATCTTCCTCGAGTCACCAAAGTTGCCTGCCTGGACTC < 41bp 0.475924380289328 0.752864791255447 0.15985695 0.41883326 prediction 0.505729582510895 Functional Gain - OR4K5 ENSG00000176281 CDS Human protein_coding chr14:20389320 chr14:20389324 nonsynonymous SNV 0.121 4 25 hm5C_associated_SNPs_107789 0 0 0 0 0 unknown 0.500231619286605 0.50023164395804 0 4.93428706782595e-08 hm5C_site_60934 DeepMRMD:0;iRNA_m5C:4.93428706782595e-08 60935 chr6 170627542 170627542 1 + T C rs572714192 170627540 + 170627520 170627560 41 GAATCCAGGCAAGAAGTTCCCATGTGTACAGGCCCTGAATC GAATCCAGGCAAGAAGTTCCCACGTGTACAGGCCCTGAATC < 41bp 0.50048357540245 0.75332397577522 0.548869 0.7476629 prediction 0.505680800745541 Functional Gain - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170627540 chr6:170627542 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_107790 0 0 1 0 0 Cytosol 0.500231644459993 0.500231661111199 0.3975878 3.33024117171732e-08 hm5C_site_60935 DeepMRMD:0.3975878;iRNA_m5C:3.33024117171732e-08 60936 chr11 60689319 60689319 1 + C G ESCA 60689318 + 60689298 60689338 41 CCTGCTGTGGGGAGCAGGGGCCCTGGTCGTCTACTGGCTGC CCTGCTGTGGGGAGCAGGGGCGCTGGTCGTCTACTGGCTGC < 41bp 0.595881542290775 0.84871955060299 0.69888777 0.8660546 prediction 0.505676016624431 Functional Gain - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60689318 chr11:60689319 synonymous SNV . 0 22 hm5C_associated_SNPs_107791 0 0 1 0 1 Ribosome 0.500231643921095 0.500231643921092 0.33433366 0 hm5C_site_60936 DeepMRMD:0.33433366;iRNA_m5C:0 60937 chr20 39974594 39974594 1 + C A COAD 39974590 + 39974570 39974610 41 TTCCGGTGCTCACCCTTCCACGTGCGTTTTGGCAAGCTGGG TTCCGGTGCTCACCCTTCCACGTGAGTTTTGGCAAGCTGGG < 41bp 0.352220709685542 0.75283643211899 0.13571331 0.26270777 prediction 0.50567286423798 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39974590 chr20:39974594 nonsynonymous SNV 0.988 5 25 hm5C_associated_SNPs_107792 0 0 0 0 1 Nucleus 0.500231652264721 0.500231644146761 0 0 hm5C_site_60937 DeepMRMD:0;iRNA_m5C:0 60938 chr11 46726189 46726189 1 + T A STAD 46726185 + 46726165 46726205 41 GGCCAAGAAGTTACACAGCCCCAGTGATCAGTGCCCACCCA GGCCAAGAAGTTACACAGCCCCAGAGATCAGTGCCCACCCA < 41bp 0.457530292245023 0.752833573292755 0.7066238 0.87168133 prediction 0.505667146585509 Functional Gain - ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46726185 chr11:46726189 nonsynonymous SNV 0.005 1 25 hm5C_associated_SNPs_107793 0 0 0 0 0 cytosol 0.500231643919694 0.500231643920194 0.33011506 1.00075503439712e-12 hm5C_site_60938 DeepMRMD:0.33011506;iRNA_m5C:1.00075503439712e-12 60939 chr1 17668876 17668876 1 + C T MESO 17668875 + 17668855 17668895 41 TGACCCCCAACACCCAGCCCCCGCAGGAGGTGTACGCGTGC TGACCCCCAACACCCAGCCCCTGCAGGAGGTGTACGCGTGC < 41bp 0.507562152350101 0.760382684392712 0.06596333 0.20921475 prediction 0.505641064085222 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668875 chr1:17668876 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_107794 0 0 0 0 2 exosome 0.500231644064879 0.500231643911299 0 0 hm5C_site_60939 DeepMRMD:0;iRNA_m5C:0 60940 chr14 24887238 24887238 1 + T A rs74036632 24887234 + 24887214 24887254 41 CAAGCCAGGTGTGGCCTGCACAGCTCTCAGGGCAGGGCTGG CAAGCCAGGTGTGGCCTGCACAGCACTCAGGGCAGGGCTGG < 41bp 0.561823212013467 0.814640574587133 0.07666361 0.08043647 prediction 0.505634725147332 Functional Gain - NYNRIN ENSG00000205978 UTR3 Human protein_coding chr14:24887234 chr14:24887238 . . 0 25 hm5C_associated_SNPs_107795 0 0 0 0 0 Exosome 0.500231643928594 0.500231644345049 0 8.32908408909816e-10 hm5C_site_60940 DeepMRMD:0;iRNA_m5C:8.32908408909816e-10 60941 chr9 101778346 101778346 1 + C A rs35529307 101778345 + 101778325 101778365 41 AAGAGTCCGGCAGCCCTCCCCCTGATGGGCCACCGCTGCCC AAGAGTCCGGCAGCCCTCCCCATGATGGGCCACCGCTGCCC < 41bp 0.513760546142488 0.766575948963302 0.18095103 0.57274514 prediction 0.505630805641628 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101778345 chr9:101778346 nonsynonymous SNV 0.011 3 22 hm5C_associated_SNPs_107796 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643924036 0.14549028 5.88662452116751e-12 hm5C_site_60941 DeepMRMD:0.14549028;iRNA_m5C:5.88662452116751e-12 60942 chr7 27194314 27194314 1 + C A rs17472084 27194310 + 27194290 27194330 41 GAGGCAGAGGGAATCCAAGGCGACCCAGTCTCTGCGGCCGC GAGGCAGAGGGAATCCAAGGCGACACAGTCTCTGCGGCCGC < 41bp 0.371596102830528 0.752811317011468 0.11967826 0.14005566 prediction 0.505622634022937 Functional Gain - HOXA-AS3 ENSG00000254369 ncRNA_exonic Human antisense chr7:27194310 chr7:27194314 . . 0 25 hm5C_associated_SNPs_107797 0 0 1 0 0 unknown 0.500231642426424 0.500231643920023 0 2.98719804447956e-09 hm5C_site_60942 DeepMRMD:0;iRNA_m5C:2.98719804447956e-09 60943 chr8 38089500 38089500 1 + C G rs151043937 38089499 + 38089479 38089519 41 GGCTCCCGGGAAGCCCCGAGCCTGGGGGAACCCTGGGCACC GGCTCCCGGGAAGCCCCGAGCGTGGGGGAACCCTGGGCACC < 41bp 0.456041916203081 0.752805274979274 0.8981584 0.91836214 prediction 0.505610549958547 Functional Gain - DDHD2 ENSG00000085788 UTR5 Human protein_coding chr8:38089499 chr8:38089500 . . 0 22 hm5C_associated_SNPs_107798 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.0404074800000001 0 hm5C_site_60943 DeepMRMD:0.0404074800000001;iRNA_m5C:0 60944 chr5 126113479 126113479 1 + C G rs74362780 126113475 + 126113455 126113495 41 GCTGGCCGACGCGCGACGCGCGCTCGACGACACGGCCCGCG GCTGGCCGACGCGCGACGCGCGCTGGACGACACGGCCCGCG < 41bp 0.560657070627468 0.813461994231148 0.0839023 0.14776894 prediction 0.50560984720736 Functional Gain - LMNB1 ENSG00000113368 CDS Human protein_coding chr5:126113475 chr5:126113479 synonymous SNV . 0 25 hm5C_associated_SNPs_107799 0 0 1 0 1 Ribosome 0.500231644551603 0.500231695820754 0 1.02538300517097e-07 hm5C_site_60944 DeepMRMD:0;iRNA_m5C:1.02538300517097e-07 60945 chr1 45224990 45224990 1 + T C rs139346428 45224988 + 45224968 45225008 41 GTTAACTCTGCTGATGATGTCATCAAGATGATCGACATGGG GTTAACTCTGCTGATGATGTCACCAAGATGATCGACATGGG < 41bp 0.562867585695493 0.815663490437875 0.08492836 0.20112795 prediction 0.505591809484764 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45224988 chr1:45224990 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_107800 0 0 1 0 1 Nucleus 0.500231673878442 0.500231663277418 0 0 hm5C_site_60945 DeepMRMD:0;iRNA_m5C:0 60946 chr11 44640229 44640229 1 + C A UCEC 44640228 + 44640208 44640248 41 CAGGCGTGGCTGCAGGAGAACCTGGGCATCATCCTCGGCGT CAGGCGTGGCTGCAGGAGAACATGGGCATCATCCTCGGCGT < 41bp 0.515629383026528 0.768424719589134 0.265813 0.24554002 prediction 0.505590673125211 Functional Gain - CD82 ENSG00000085117 CDS Human protein_coding chr11:44640228 chr11:44640229 nonsynonymous SNV 0.481 2 22 hm5C_associated_SNPs_107801 0 0 0 0 2 Nucleus 0.500231643921093 0.500231643921092 0 0 hm5C_site_60946 DeepMRMD:0;iRNA_m5C:0 60947 chr16 58426569 58426569 1 + T G COAD 58426567 + 58426547 58426587 41 GCCTGAGGAGAACTTTCTTTCTTTGGACGACATCCTGATGT GCCTGAGGAGAACTTTCTTTCTGTGGACGACATCCTGATGT < 41bp 0.4139114503375 0.752790026159452 0.28325748 0.37922668 prediction 0.505580052318904 Functional Gain - GINS3 ENSG00000181938 CDS Human protein_coding chr16:58426567 chr16:58426569 nonsynonymous SNV 0.974 3 23 hm5C_associated_SNPs_107802 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921634 0 1.08357767203415e-12 hm5C_site_60947 DeepMRMD:0;iRNA_m5C:1.08357767203415e-12 60948 chr15 85787980 85787980 1 + T G rs201352385 85787978 + 85787958 85787998 41 AGGAGGAGAGGCTACGTGAACATGAGGAGAGGCTGTGTGAA AGGAGGAGAGGCTACGTGAACAGGAGGAGAGGCTGTGTGAA < 41bp 0.568701145281283 0.821486818747189 0.15282252 0.73918843 prediction 0.505571346931812 Functional Gain - GOLGA6L3 ENSG00000188388 ncRNA_exonic Human unprocessed_pseudogene chr15:85787978 chr15:85787980 . . 0 23 hm5C_associated_SNPs_107803 0 0 0 0 0 unknown 0.500231643921098 0.500231643921093 0.47837686 0 hm5C_site_60948 DeepMRMD:0.47837686;iRNA_m5C:0 60949 chr3 44607114 44607114 1 + C A STAD 44607113 + 44607093 44607133 41 CACCTGGAGCCTCCTTATGACCCAGGGACACACCACCTCCC CACCTGGAGCCTCCTTATGACACAGGGACACACCACCTCCC < 41bp 0.494336619724211 0.752780400281256 0.023407668 0.12964636 prediction 0.505560800562513 Functional Gain - ZKSCAN7 ENSG00000196345;ENSG00000273303 CDS Human other chr3:44607113 chr3:44607114 nonsynonymous SNV 0.011 0 22 hm5C_associated_SNPs_107804 0 0 0 0 1 exosome 0.500231643949883 0.50023167619557 0 6.44913753511389e-08 hm5C_site_60949 DeepMRMD:0;iRNA_m5C:6.44913753511389e-08 60950 chr1 150997270 150997270 1 + T C UCEC 150997268 + 150997248 150997288 41 GGCAAACTGCAGCCCTTCTGCATGGTAAGGGTGGCTTTTGG GGCAAACTGCAGCCCTTCTGCACGGTAAGGGTGGCTTTTGG < 41bp 0.527054938818183 0.779831666457254 0.44715187 0.38891983 prediction 0.505553455278142 Functional Gain - PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:150997268 chr1:150997270 synonymous SNV . 0 23 hm5C_associated_SNPs_107805 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_60950 DeepMRMD:0;iRNA_m5C:0 60951 chr2 234526562 234526562 1 + T G UCEC 234526559 + 234526539 234526579 41 GAGTTGGCAACTGGGAAAATCACTGAATTGCACAGTGAAGA GAGTTGGCAACTGGGAAAATCACGGAATTGCACAGTGAAGA < 41bp 0.361561508266438 0.752757635310732 0.14941284 0.37215614 prediction 0.505515270621464 Functional Gain - UGT1A8 ENSG00000241635 CDS Human protein_coding chr2:234526559 chr2:234526562 nonsynonymous SNV 0.620 0 24 hm5C_associated_SNPs_107806 0 0 0 0 0 exosome 0.500231596244723 0.500231643921932 0 9.5354419471505e-08 hm5C_site_60951 DeepMRMD:0;iRNA_m5C:9.5354419471505e-08 60952 chr1 26511613 26511613 1 + C A rs375307370 26511612 + 26511592 26511632 41 CACCGGGCGGCTTCATGGGCCCGCGCTGGCGCCGCCGCTGG CACCGGGCGGCTTCATGGGCCAGCGCTGGCGCCGCCGCTGG < 41bp 0.498564150069265 0.75275158315076 0.20188916 0.36802602 prediction 0.505503166301519 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26511612 chr1:26511613 nonsynonymous SNV 0.997 1 22 hm5C_associated_SNPs_107807 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_60952 DeepMRMD:0;iRNA_m5C:0 60953 chr17 1202140 1202140 1 + T G rs560349122 1202137 + 1202117 1202157 41 GGACCTCCCCCGGCAGGCACCTGTGGGGGGTGCAGCTCCCG GGACCTCCCCCGGCAGGCACCTGGGGGGGGTGCAGCTCCCG < 41bp 0.655967026028344 0.908717214822213 0.79758036 0.9104291 prediction 0.505500377587738 Functional Gain - TUSC5 ENSG00000184811 UTR3 Human protein_coding chr17:1202137 chr17:1202140 . . 0 24 hm5C_associated_SNPs_107808 0 0 0 0 0 exosome 0.500231643921099 0.500231647109443 0.22569748 6.37668762237809e-09 hm5C_site_60953 DeepMRMD:0.22569748;iRNA_m5C:6.37668762237809e-09 60954 chr19 9271969 9271969 1 + C A rs9305035 9271965 + 9271945 9271985 41 GGCTCCAACCTGAATGTGCACAGGCGGATCCACACCGGGGA GGCTCCAACCTGAATGTGCACAGGAGGATCCACACCGGGGA < 41bp 0.660840853139701 0.913589559970577 0.7608452 0.7722664 prediction 0.505497413661753 Functional Gain - ZNF317 ENSG00000130803 CDS Human protein_coding chr19:9271965 chr19:9271969 synonymous SNV . 0 25 hm5C_associated_SNPs_107809 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643912843 0.0228424 0 hm5C_site_60954 DeepMRMD:0.0228424;iRNA_m5C:0 60955 chr16 29848100 29848100 1 + C T UCEC 29848099 + 29848079 29848119 41 GACTTCAGGGGAGTGTCCCGCCGCACTGGGGAGGAGTGGCT GACTTCAGGGGAGTGTCCCGCTGCACTGGGGAGGAGTGGCT < 41bp 0.504892929871295 0.757640961589828 0.86554563 0.86030257 prediction 0.505496063437064 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29848099 chr16:29848100 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_107810 0 0 0 0 1 Nucleus 0.500231643914599 0.500231644034801 0 2.40404141038653e-10 hm5C_site_60955 DeepMRMD:0;iRNA_m5C:2.40404141038653e-10 60956 chrX 105452456 105452456 1 + C A rs753129636 105452452 + 105452432 105452472 41 GATATAAACTGTAGAAAAGGCAAGCACTTTGTTCTGAGTCT GATATAAACTGTAGAAAAGGCAAGAACTTTGTTCTGAGTCT < 41bp 0.40633248505268 0.752746610300965 0.29307216 0.45469323 prediction 0.505493220601931 Functional Gain - MUM1L1 ENSG00000157502 UTR3 Human protein_coding chrX:105452452 chrX:105452456 . . 0 25 hm5C_associated_SNPs_107811 0 0 0 20 0 exosome 0.500231643794311 0.500231643928371 0 2.68121969071444e-10 hm5C_site_60956 DeepMRMD:0;iRNA_m5C:2.68121969071444e-10 60957 chr20 21687042 21687042 1 + C G rs146191505 21687038 + 21687018 21687058 41 GCTAACCCGCCGGGTGTTTTCTCCCCCTCCGGCTCACTCTT GCTAACCCGCCGGGTGTTTTCTCCGCCTCCGGCTCACTCTT < 41bp 0.45652969355217 0.752741763480564 0.6188531 0.84082377 prediction 0.505483526961128 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21687038 chr20:21687042 nonsynonymous SNV 0.459 1 25 hm5C_associated_SNPs_107812 0 0 0 0 0 unknown 0.500231643915672 0.500231643921448 0.44394134 1.15520926158297e-11 hm5C_site_60957 DeepMRMD:0.44394134;iRNA_m5C:1.15520926158297e-11 60958 chr11 55032762 55032762 1 + C A LUAD 55032761 + 55032741 55032781 41 ACCGGTATCACAGACACTGTCCCGCTGAGTGGGCTGCTGAG ACCGGTATCACAGACACTGTCACGCTGAGTGGGCTGCTGAG < 41bp 0.509702124100996 0.7624388381586 0.21450004 0.35147378 prediction 0.505473428115207 Functional Gain - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55032761 chr11:55032762 nonsynonymous SNV 0.038 3 22 hm5C_associated_SNPs_107813 0 0 0 0 1 unknown 0.500229942877045 0.500294722720048 0 0.000129559686004699 hm5C_site_60958 DeepMRMD:0;iRNA_m5C:0.000129559686004699 60959 chr1 99771917 99771917 1 + C T COAD 99771916 + 99771896 99771936 41 AGGAAAACATAAGCACCTCCCCCAAAAGCAGCTCTGCTCGG AGGAAAACATAAGCACCTCCCTCAAAAGCAGCTCTGCTCGG < 41bp 0.501333439342364 0.754069335837222 0.28459042 0.44620594 prediction 0.505471792989716 Functional Gain - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99771916 chr1:99771917 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107814 0 0 0 0 0 exosome 0.500231643921092 0.500231643921111 0 3.66373598126302e-14 hm5C_site_60959 DeepMRMD:0;iRNA_m5C:3.66373598126302e-14 60960 chr7 53103862 53103862 1 + C A LUAD 53103858 + 53103838 53103878 41 CCGCCCCGCAGGCCGCCCCGCCGCCCAGGAGCTCCTGGACC CCGCCCCGCAGGCCGCCCCGCCGCACAGGAGCTCCTGGACC < 41bp 0.369185289306428 0.752720571978398 0.38822168 0.3125064 prediction 0.505441143956797 Functional Gain - POM121L12 ENSG00000221900 CDS Human protein_coding chr7:53103858 chr7:53103862 synonymous SNV . 0 25 hm5C_associated_SNPs_107815 0 0 0 0 0 unknown 0.500231643920737 0.500231643921092 0 7.10764780365025e-13 hm5C_site_60960 DeepMRMD:0;iRNA_m5C:7.10764780365025e-13 60961 chr3 97851685 97851685 1 + C A UCEC 97851681 + 97851661 97851701 41 GGGGAATCTTGGTCTGATTGCTGTCATCTGGAAAGACCCTC GGGGAATCTTGGTCTGATTGCTGTAATCTGGAAAGACCCTC < 41bp 0.379882005030266 0.752717386022311 0.16493735 0.2566339 prediction 0.505434772044622 Functional Gain - OR5H1 ENSG00000231192 CDS Human protein_coding chr3:97851681 chr3:97851685 synonymous SNV . 0 25 hm5C_associated_SNPs_107816 0 0 0 0 0 unknown 0.500231642918862 0.500231643921092 0 2.00446015341527e-09 hm5C_site_60961 DeepMRMD:0;iRNA_m5C:2.00446015341527e-09 60962 chr12 27175494 27175494 1 + T A rs3963548 27175490 + 27175470 27175510 41 CGGAAGAGCAGCTGTTTTGGCGTCTGTTTGCTGCGGTAGGA CGGAAGAGCAGCTGTTTTGGCGTCAGTTTGCTGCGGTAGGA < 41bp 0.561065629997615 0.813769186350589 0.33173844 0.3424925 prediction 0.505407112705949 Functional Gain - MED21 ENSG00000152944 UTR5 Human protein_coding chr12:27175490 chr12:27175494 . . 0 25 hm5C_associated_SNPs_107817 0 0 1 0 1 Cytosol 0.50023403604347 0.500234941180297 0 1.81027365320219e-06 hm5C_site_60962 DeepMRMD:0;iRNA_m5C:1.81027365320219e-06 60963 chr8 91013752 91013752 1 + T G STAD 91013749 + 91013729 91013769 41 ACCGGCCAGGGTTTTCTTTACTCTGGGGTCCCGGCTGCCCT ACCGGCCAGGGTTTTCTTTACTCGGGGGTCCCGGCTGCCCT < 41bp 0.658137813271837 0.910840606054914 0.38741255 0.670138 prediction 0.505405585566154 Functional Gain - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91013749 chr8:91013752 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_107818 0 0 1 0 0 Cytosol 0.500231643921109 0.500231643921092 0.340276 0 hm5C_site_60963 DeepMRMD:0.340276;iRNA_m5C:0 60964 chr6 27356783 27356783 1 + C G rs188001937 27356782 + 27356762 27356802 41 TTCCGCTCCAAGTGCGGGACCCGCCCGGGGTGTGTCGGGGG TTCCGCTCCAAGTGCGGGACCGGCCCGGGGTGTGTCGGGGG < 41bp 0.492900588276327 0.752699709519656 0.06224665 0.17979431 prediction 0.505399419039311 Functional Gain - ZNF391 ENSG00000124613 UTR5 Human protein_coding chr6:27356782 chr6:27356783 . . 0 22 hm5C_associated_SNPs_107819 0 0 0 0 1 nucleolus 0.500231639964353 0.500237301486866 0 1.13230450244917e-05 hm5C_site_60964 DeepMRMD:0;iRNA_m5C:1.13230450244917e-05 60965 chr14 24675174 24675174 1 + C A UCEC 24675170 + 24675150 24675190 41 AGAGGCAGCACCAACCACCACAGCCTACCATTCCCTCATGG AGAGGCAGCACCAACCACCACAGCATACCATTCCCTCATGG < 41bp 0.351047112155201 0.752695046069777 0.12321693 0.10029641 prediction 0.505390092139554 Functional Gain - TSSK4 ENSG00000139908 CDS Human protein_coding chr14:24675170 chr14:24675174 synonymous SNV . 0 25 hm5C_associated_SNPs_107820 0 0 0 0 0 nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_60965 DeepMRMD:0;iRNA_m5C:0 60966 chr8 145065447 145065447 1 + C A UCEC 145065446 + 145065426 145065466 41 ACAACTATCCTCCCCCCAACCCTGGATATCCGGGGGGGCCC ACAACTATCCTCCCCCCAACCATGGATATCCGGGGGGGCCC < 41bp 0.49930650982916 0.752691381561325 0.2817061 0.24530303 prediction 0.505382763122651 Functional Gain - GRINA ENSG00000178719 CDS Human protein_coding chr8:145065446 chr8:145065447 nonsynonymous SNV 0.748 1 22 hm5C_associated_SNPs_107821 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500232396797155 0 1.50575212454207e-06 hm5C_site_60966 DeepMRMD:0;iRNA_m5C:1.50575212454207e-06 60967 chr22 26709777 26709777 1 + C T SARC 26709776 + 26709756 26709796 41 GTGGCTGGGGTGGTATTGTCCCCAAACTGGCCCGAGCCCTA GTGGCTGGGGTGGTATTGTCCTCAAACTGGCCCGAGCCCTA < 41bp 0.494381855187868 0.752686755163158 0.27599186 0.07841098 prediction 0.505373510326317 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26709776 chr22:26709777 nonsynonymous SNV 0.992 4 22 hm5C_associated_SNPs_107822 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60967 DeepMRMD:0;iRNA_m5C:0 60968 chr2 203130554 203130554 1 + T A LUSC 203130550 + 203130530 203130570 41 TCTTTGCGGGACGGCGAGCGCATTTGTGCTTTGCCCGCCGC TCTTTGCGGGACGGCGAGCGCATTAGTGCTTTGCCCGCCGC < 41bp 0.499711759571079 0.752681689944972 0.19518802 0.41495395 prediction 0.505363379889944 Functional Gain - NOP58 ENSG00000055044 UTR5 Human protein_coding chr2:203130550 chr2:203130554 . . 0 25 hm5C_associated_SNPs_107823 0 0 1 0 0 Nucleus 0.500231643921085 0.500231643921089 0 6.88338275267597e-15 hm5C_site_60968 DeepMRMD:0;iRNA_m5C:6.88338275267597e-15 60969 chr20 3785499 3785499 1 + T C BRCA 3785497 + 3785477 3785517 41 GAACCCCAGGACTACCGGCCCATGAACCACGAGGCCTTCAA GAACCCCAGGACTACCGGCCCACGAACCACGAGGCCTTCAA < 41bp 0.522264216002746 0.774941753118341 0.08426899 0.13418987 prediction 0.50535507423119 Functional Gain - CDC25B ENSG00000101224 CDS Human protein_coding chr20:3785497 chr20:3785499 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107824 0 0 1 0 1 Ribosome 0.500231658751932 0.500231644046262 0 0 hm5C_site_60969 DeepMRMD:0;iRNA_m5C:0 60970 chr9 103348604 103348604 1 + C G rs546031058 103348600 + 103348580 103348620 41 CAGTGAACCAGAACACGAGGCAGCCAGGCCGGTGTATCCTC CAGTGAACCAGAACACGAGGCAGCGAGGCCGGTGTATCCTC < 41bp 0.574012775047547 0.826689695070592 0.16424134 0.35074052 prediction 0.50535384004609 Functional Gain - CAVIN4 ENSG00000170681 CDS Human protein_coding chr9:103348600 chr9:103348604 synonymous SNV . 0 25 hm5C_associated_SNPs_107825 0 0 1 0 0 unknown 0.500231456357928 0.500234110029183 0 5.30734250925313e-06 hm5C_site_60970 DeepMRMD:0;iRNA_m5C:5.30734250925313e-06 60971 chr19 15839715 15839715 1 + C G LUAD 15839711 + 15839691 15839731 41 GCAGTCCTCACGCCCTTCCTCAGCCCCATCATCTTCAGCCT GCAGTCCTCACGCCCTTCCTCAGCGCCATCATCTTCAGCCT < 41bp 0.564998751642101 0.817668387706224 0.27968755 0.85370106 prediction 0.505339272128247 Functional Gain - OR10H2 ENSG00000171942 CDS Human protein_coding chr19:15839711 chr19:15839715 nonsynonymous SNV 0.969 2 25 hm5C_associated_SNPs_107826 0 0 0 0 0 unknown 0.500231643835735 0.500231643821409 0.70740212 0 hm5C_site_60971 DeepMRMD:0.70740212;iRNA_m5C:0 60972 chr16 67943500 67943500 1 + T G LUSC 67943497 + 67943477 67943517 41 CAACTCAGTGGACATGTGGGCGCTGGGCGTCATTGCCTACA CAACTCAGTGGACATGTGGGCGCGGGGCGTCATTGCCTACA < 41bp 0.361483846902569 0.752669430084659 0.12702781 0.43862987 prediction 0.505338860169318 Functional Gain - PSKH1 ENSG00000159792 CDS Human protein_coding chr16:67943497 chr16:67943500 nonsynonymous SNV 0.977 4 24 hm5C_associated_SNPs_107827 0 0 1 0 0 Cytosol 0.500231643924117 0.500231643918199 0 0 hm5C_site_60972 DeepMRMD:0;iRNA_m5C:0 60973 chr4 123350870 123350870 1 + C A STAD 123350866 + 123350846 123350886 41 TGGATCCTGGATTGTGAAATCTCCCTGCATAGAGCAATTTA TGGATCCTGGATTGTGAAATCTCCATGCATAGAGCAATTTA < 41bp 0.336264994996678 0.752660584723603 0.080007166 0.94791734 prediction 0.505321169447205 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123350866 chr4:123350870 synonymous SNV . 0 25 hm5C_associated_SNPs_107828 0 0 0 0 0 exosome 0.500233247510088 0.500231646474127 0.89583468 0 hm5C_site_60973 DeepMRMD:0.89583468;iRNA_m5C:0 60974 chr3 127771241 127771241 1 + C G rs571322395 127771237 + 127771217 127771257 41 TCCGAGGCCCGGCCCCGGCCCCGCCCCGCGCCGCGCCGCGC TCCGAGGCCCGGCCCCGGCCCCGCGCCGCGCCGCGCCGCGC < 41bp 0.531709898113199 0.784365367829124 0.14426082 0.2966497 prediction 0.50531093943185 Functional Gain - SEC61A1 ENSG00000058262 UTR5 Human protein_coding chr3:127771237 chr3:127771241 . . 0 25 hm5C_associated_SNPs_107829 0 0 0 0 0 Ribosome 0.500231924171239 0.500231643925235 0 0 hm5C_site_60974 DeepMRMD:0;iRNA_m5C:0 60975 chr1 44437261 44437261 1 + C G COAD 44437257 + 44437237 44437277 41 CTCTAAGGCCAGCCCTGACCCAGACCTTGACCCAGACCTGA CTCTAAGGCCAGCCCTGACCCAGAGCTTGACCCAGACCTGA < 41bp 0.459302785473888 0.752652559507962 0.5693281 0.8959471 prediction 0.505305119015924 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44437257 chr1:44437261 nonsynonymous SNV 0.560 0 25 hm5C_associated_SNPs_107830 0 0 1 0 0 nucleolus 0.500231643921092 0.500231643921092 0.653238 0 hm5C_site_60975 DeepMRMD:0.653238;iRNA_m5C:0 60976 chr2 224824694 224824694 1 + C A BLCA 224824693 + 224824673 224824713 41 CCCTGTTACAGAGCAGTGGACCTGAGAGGACTGCACTTTTC CCCTGTTACAGAGCAGTGGACATGAGAGGACTGCACTTTTC < 41bp 0.505520055350335 0.758171302815678 0.58910143 0.8261967 prediction 0.505302494930686 Functional Gain - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224824693 chr2:224824694 nonsynonymous SNV 0.981 2 22 hm5C_associated_SNPs_107831 0 0 1 0 0 Ribosome 0.500227338209187 0.500231644175534 0.47419054 8.61193269363625e-06 hm5C_site_60976 DeepMRMD:0.47419054;iRNA_m5C:8.61193269363625e-06 60977 chr4 110789053 110789053 1 + C A BRCA 110789052 + 110789032 110789072 41 TGATGCCACTGGCTTCCCCACCCCACAGATCACATGGACCA TGATGCCACTGGCTTCCCCACACCACAGATCACATGGACCA < 41bp 0.506299682609139 0.758950140862402 0.131679 0.09875214 prediction 0.505300916506526 Functional Gain - LRIT3 ENSG00000183423 CDS Human protein_coding chr4:110789052 chr4:110789053 synonymous SNV . 0 22 hm5C_associated_SNPs_107832 0 0 1 0 1 Nucleus 0.500229758308707 0.500231643418026 0 3.77021863728899e-06 hm5C_site_60977 DeepMRMD:0;iRNA_m5C:3.77021863728899e-06 60978 chr20 55093441 55093441 1 + T G rs543178075 55093438 + 55093418 55093458 41 TATAGTTCTGTGTCATAAAGCTGTCCTGGCCAGCCTTCAAG TATAGTTCTGTGTCATAAAGCTGGCCTGGCCAGCCTTCAAG < 41bp 0.371510998265552 0.752643813366911 0.36678717 0.8118063 prediction 0.505287626733821 Functional Gain - RTFDC1 ENSG00000022277 UTR3 Human protein_coding chr20:55093438 chr20:55093441 . . 0 24 hm5C_associated_SNPs_107833 0 0 1 0 0 Ribosome 0.500231643921672 0.500231643921102 0.6236126 0 hm5C_site_60978 DeepMRMD:0.6236126;iRNA_m5C:0 60979 chr1 203472722 203472722 1 + C A LUAD 203472721 + 203472701 203472741 41 GAGAGACGTCTTCTGTGACCCCGAGGAGCACAAACACACCC GAGAGACGTCTTCTGTGACCCAGAGGAGCACAAACACACCC < 41bp 0.504995133793344 0.757637456207576 0.15812474 0.6797692 prediction 0.505284644828466 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472721 chr1:203472722 synonymous SNV . 0 22 hm5C_associated_SNPs_107834 0 0 0 0 1 unknown 0.500231643921315 0.500231643919503 0.3595384 0 hm5C_site_60979 DeepMRMD:0.3595384;iRNA_m5C:0 60980 chr10 71665558 71665558 1 + C G rs200902481 71665557 + 71665537 71665577 41 TCCCAGGGAGACCCAGGGATCCAGGGCTACCACGGCCGGAA TCCCAGGGAGACCCAGGGATCGAGGGCTACCACGGCCGGAA < 41bp 0.462021378557798 0.752640012204117 0.93180484 0.94529593 prediction 0.505280024408234 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71665557 chr10:71665558 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_107835 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.0269821800000001 0 hm5C_site_60980 DeepMRMD:0.0269821800000001;iRNA_m5C:0 60981 chr12 113704138 113704138 1 + C T SKCM 113704137 + 113704117 113704157 41 CTGTGCGAGGCCCCCGCCGTCCCCGCACTCCGGCTTGGCAT CTGTGCGAGGCCCCCGCCGTCTCCGCACTCCGGCTTGGCAT < 41bp 0.512314533769764 0.764948679671816 0.071529955 0.3067904 prediction 0.505268291804104 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113704137 chr12:113704138 nonsynonymous SNV 0.145 4 22 hm5C_associated_SNPs_107836 0 0 0 0 1 chromatin 0.500231644505397 0.500231645303621 0 1.59644675257198e-09 hm5C_site_60981 DeepMRMD:0;iRNA_m5C:1.59644675257198e-09 60982 chr5 167898017 167898017 1 + C G rs569842078 167898013 + 167897993 167898033 41 GAGTGAAACCCAGGCAGAGACAGGCAAAATGGTGAGGCCCG GAGTGAAACCCAGGCAGAGACAGGGAAAATGGTGAGGCCCG < 41bp 0.484808196380001 0.752627799499177 0.48281643 0.9093559 prediction 0.505255598998354 Functional Gain - WWC1 ENSG00000113645 UTR3 Human protein_coding chr5:167898013 chr5:167898017 . . 0 25 hm5C_associated_SNPs_107837 0 0 0 0 0 Ribosome 0.500231643855738 0.500231643920581 0.8187118 1.2968448537265e-10 hm5C_site_60982 DeepMRMD:0.8187118;iRNA_m5C:1.2968448537265e-10 60983 chr12 104324182 104324182 1 + C G rs2070908 104324178 + 104324158 104324198 41 GTGAAAAGCGGCCCGACCTGCTTGCGGTGTAGTGGGCGGAC GTGAAAAGCGGCCCGACCTGCTTGGGGTGTAGTGGGCGGAC < 41bp 0.522302606133164 0.774930380080895 0.25968125 0.43259287 prediction 0.505255547895462 Functional Gain - HSP90B1 ENSG00000166598 UTR5 Human protein_coding chr12:104324178 chr12:104324182 . . 0 25 hm5C_associated_SNPs_107838 0 0 1 0 0 Nucleus 0.500231643947188 0.500231643921092 0 0 hm5C_site_60983 DeepMRMD:0;iRNA_m5C:0 60984 chr5 140944251 140944251 1 + C A rs534625840 140944247 + 140944227 140944267 41 GAATGAAACTCAGACCAAAACAAACAAAATAACAAAAGGAC GAATGAAACTCAGACCAAAACAAAAAAAATAACAAAAGGAC < 41bp 0.431172329899539 0.752624369478077 0.09622255 0.7965815 prediction 0.505248738956155 Functional Gain - LOC100505658 ENSG00000246422 ncRNA_exonic Human antisense chr5:140944247 chr5:140944251 . . 0 25 hm5C_associated_SNPs_107839 0 0 0 0 0 unknown 0.50023164111693 0.500231643922884 0.593163 5.61190893755281e-09 hm5C_site_60984 DeepMRMD:0.593163;iRNA_m5C:5.61190893755281e-09 60985 chr16 20432665 20432665 1 + C A rs150645471 20432664 + 20432644 20432684 41 ACCAGCGGAACCACCGGGGCCCCCAAGATGGTCGAGCACTC ACCAGCGGAACCACCGGGGCCACCAAGATGGTCGAGCACTC < 41bp 0.511357001091475 0.763973265652535 0.12803486 0.2979598 prediction 0.505232529122119 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432664 chr16:20432665 nonsynonymous SNV 0.842 5 22 hm5C_associated_SNPs_107840 0 0 0 0 2 cytosol 0.500231645766113 0.500251342257266 0 3.93929823052641e-05 hm5C_site_60985 DeepMRMD:0;iRNA_m5C:3.93929823052641e-05 60986 chr19 36357124 36357124 1 + T C HNSC 36357122 + 36357102 36357142 41 GCCTGAGCCTTGGCGAAGCCCCTGGAGGAGGTCTCTTCCTG GCCTGAGCCTTGGCGAAGCCCCCGGAGGAGGTCTCTTCCTG < 41bp 0.496211529299315 0.752608051627324 0.33644348 0.30108207 prediction 0.505216103254648 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357122 chr19:36357124 synonymous SNV . 0 23 hm5C_associated_SNPs_107841 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_60986 DeepMRMD:0;iRNA_m5C:0 60987 chr3 9490166 9490166 1 + C A BRCA 9490162 + 9490142 9490182 41 TCACAACGGATCCAACTGTACTGGCAACGACCCTAAACATG TCACAACGGATCCAACTGTACTGGAAACGACCCTAAACATG < 41bp 0.334193098102749 0.752607029012388 0.1240854 0.13192296 prediction 0.505214058024776 Functional Gain - SETD5 ENSG00000168137 CDS Human protein_coding chr3:9490162 chr3:9490166 nonsynonymous SNV 1.000 5 25 hm5C_associated_SNPs_107842 0 0 1 0 1 Nucleus 0.500231868815478 0.500231643939756 0 0 hm5C_site_60987 DeepMRMD:0;iRNA_m5C:0 60988 chr16 56686917 56686917 1 + C A rs77377595 56686916 + 56686896 56686936 41 TTGCTGCCCCGTGGGCTGTGCCAAGTGTGCCCAGGGCTGTG TTGCTGCCCCGTGGGCTGTGCAAAGTGTGCCCAGGGCTGTG < 41bp 0.502834780566548 0.755441039610422 0.5599987 0.27397966 prediction 0.505212518087747 Functional Gain - MT1B ENSG00000169688 CDS Human protein_coding chr16:56686916 chr16:56686917 nonsynonymous SNV 0.982 0 22 hm5C_associated_SNPs_107843 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_60988 DeepMRMD:0;iRNA_m5C:0 60989 chr3 97356779 97356779 1 + C A LUAD 97356775 + 97356755 97356795 41 AATGCTCCGAGGCATTGCATCAGGCATGAAGTATCTTTCTG AATGCTCCGAGGCATTGCATCAGGAATGAAGTATCTTTCTG < 41bp 0.411340217438257 0.75260588728806 0.88494617 0.9054551 prediction 0.50521177457612 Functional Gain - EPHA6 ENSG00000080224 CDS Human protein_coding chr3:97356775 chr3:97356779 synonymous SNV . 0 25 hm5C_associated_SNPs_107844 0 0 0 1 1 exosome 0.500231644051979 0.500231643922037 0.04101786 0 hm5C_site_60989 DeepMRMD:0.04101786;iRNA_m5C:0 60990 chr1 164790850 164790850 1 + C T UCEC 164790849 + 164790829 164790869 41 CAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGTGTAAGA CAGCCAGTCAGATGTACAGTCTGCAGGGCATCAGTGTAAGA < 41bp 0.516932554993376 0.769519584623998 0.12297708 0.23453858 prediction 0.505174059261243 Functional Gain - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164790849 chr1:164790850 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_107845 0 0 0 0 1 Ribosome 0.500207005005583 0.500203355185806 0 0 hm5C_site_60990 DeepMRMD:0;iRNA_m5C:0 60991 chr1 149858580 149858580 1 + C A LUAD 149858576 + 149858556 149858596 41 CCCGCGCCAAGGCCAAGTCGCGCTCGTCCCGCGCTGGCCTC CCCGCGCCAAGGCCAAGTCGCGCTAGTCCCGCGCTGGCCTC < 41bp 0.646764715271711 0.899342673235521 0.29200196 0.43807614 prediction 0.50515591592762 Functional Gain - HIST2H2AC ENSG00000184260 CDS Human protein_coding chr1:149858576 chr1:149858580 stopgain 0.831 0 25 hm5C_associated_SNPs_107846 0 0 1 0 0 Ribosome 0.500231644128997 0.500231643921071 0 0 hm5C_site_60991 DeepMRMD:0;iRNA_m5C:0 60992 chr16 30533607 30533607 1 + C A rs570552605 30533603 + 30533583 30533623 41 CACCAGCCTTTCTCCCAGGCCAGGCTCCTTCCTGTCTTCCT CACCAGCCTTTCTCCCAGGCCAGGATCCTTCCTGTCTTCCT < 41bp 0.374774190495795 0.752569100952471 0.18278801 0.27514657 prediction 0.505138201904942 Functional Gain - ITGAL ENSG00000005844 UTR3 Human protein_coding chr16:30533603 chr16:30533607 . . 0 25 hm5C_associated_SNPs_107847 0 0 0 1 0 Cytosol 0.50022684484059 0.500231643868429 0 9.59805567668504e-06 hm5C_site_60992 DeepMRMD:0;iRNA_m5C:9.59805567668504e-06 60993 chr15 102312431 102312431 1 + T G UCEC 102312429 + 102312409 102312449 41 TCTTCCTTGTCCTGGACCAGCCTGATGATGTCCTCCTCCAG TCTTCCTTGTCCTGGACCAGCCGGATGATGTCCTCCTCCAG < 41bp 0.432651628502738 0.75254811433721 0.31688565 0.93979627 prediction 0.505096228674419 Functional Gain - LOC100128108;OR4F6 ENSG00000259236;ENSG00000259660 ncRNA_exonic Human other chr15:102312429 chr15:102312431 . . 0 23 hm5C_associated_SNPs_107848 0 0 0 0 0 unknown 0.500231643921092 0.500231643907678 0.87959254 0 hm5C_site_60993 DeepMRMD:0.87959254;iRNA_m5C:0 60994 chr10 70928377 70928377 1 + T C COAD 70928375 + 70928355 70928395 41 GATGAGGAAGACCGGAGGTACTTCAAACAGCAGGTATGGTG GATGAGGAAGACCGGAGGTACTCCAAACAGCAGGTATGGTG < 41bp 0.470800411482817 0.752543759747543 0.19335273 0.94805133 prediction 0.505087519495087 Functional Gain - VPS26A ENSG00000122958 CDS Human protein_coding chr10:70928375 chr10:70928377 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_107849 0 0 1 0 1 Ribosome 0.500231643921235 0.500231643921095 0.89610266 0 hm5C_site_60994 DeepMRMD:0.89610266;iRNA_m5C:0 60995 chr11 68700858 68700858 1 + C T UCEC 68700857 + 68700837 68700877 41 CGGACACTGACGGTGCAGTACCGCATGCACCAGGCTATCAT CGGACACTGACGGTGCAGTACTGCATGCACCAGGCTATCAT < 41bp 0.548397631649071 0.800936718362344 0.17660022 0.1643587 prediction 0.505078173426547 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68700857 chr11:68700858 nonsynonymous SNV 0.983 5 22 hm5C_associated_SNPs_107850 0 0 0 0 2 chromatin 0.500208340921876 0.500221861297851 0 2.70407519484817e-05 hm5C_site_60995 DeepMRMD:0;iRNA_m5C:2.70407519484817e-05 60996 chr16 28878700 28878700 1 + C G BLCA 28878699 + 28878679 28878719 41 TGCTCTTCTATCACAGACGTCCGGACAACCACAGCCCTGGA TGCTCTTCTATCACAGACGTCGGGACAACCACAGCCCTGGA < 41bp 0.432624638000059 0.752535442093362 0.29796404 0.8648813 prediction 0.505070884186725 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28878699 chr16:28878700 nonsynonymous SNV 0.998 3 22 hm5C_associated_SNPs_107851 0 0 1 0 3 Cytosol 0.500236503801457 0.500231718076524 0.7297626 0 hm5C_site_60996 DeepMRMD:0.7297626;iRNA_m5C:0 60997 chr15 75942203 75942203 1 + C A COAD 75942199 + 75942179 75942219 41 ATCAAAAGCTACATCTCCTACAAGCTCACACCCACCCATGC ATCAAAAGCTACATCTCCTACAAGATCACACCCACCCATGC < 41bp 0.344330566626295 0.752535333642435 0.04474497 0.028837591 prediction 0.50507066728487 Functional Gain - SNX33 ENSG00000173548 CDS Human protein_coding chr15:75942199 chr15:75942203 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_107852 0 0 1 0 0 membrane 0.500231655231511 0.500231061094324 0 0 hm5C_site_60997 DeepMRMD:0;iRNA_m5C:0 60998 chr3 11059650 11059650 1 + T A LUAD 11059646 + 11059626 11059666 41 GCTAGGGGTATGGAAGCTGGCTCCTATGTTCAAGGGTAAGT GCTAGGGGTATGGAAGCTGGCTCCAATGTTCAAGGGTAAGT < 41bp 0.408150757161127 0.752533857705796 0.048213273 0.30915922 prediction 0.505067715411592 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11059646 chr3:11059650 synonymous SNV . 0 25 hm5C_associated_SNPs_107853 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_60998 DeepMRMD:0;iRNA_m5C:0 60999 chr4 132650916 132650916 1 + C G rs547118762 132650915 + 132650895 132650935 41 CGCGCAGCCCAGCCAGCACCCCGAAGGTCCTCCTTCACCGG CGCGCAGCCCAGCCAGCACCCGGAAGGTCCTCCTTCACCGG < 41bp 0.570770804460967 0.823302914564229 0.26141047 0.8485843 prediction 0.505064220206525 Functional Gain - LINC02479;SNHG27 ENSG00000241392;ENSG00000252014 intergenic Human other chr4:132650915 chr4:132650916 . . 0 22 hm5C_associated_SNPs_107854 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.6971686 0 hm5C_site_60999 DeepMRMD:0.6971686;iRNA_m5C:0 61000 chr8 98943201 98943201 1 + C G BLCA 98943197 + 98943177 98943217 41 CCAGAGAGTTCCTGTGAGAACAAGCGGGCAGACCTGGTTTT CCAGAGAGTTCCTGTGAGAACAAGGGGGCAGACCTGGTTTT < 41bp 0.575951612034979 0.828478763075764 0.30591708 0.89131844 prediction 0.505054302081571 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:98943197 chr8:98943201 nonsynonymous SNV 0.987 1 25 hm5C_associated_SNPs_107855 0 0 0 0 0 Cytosol 0.500231643921093 0.50023164392112 0.78263688 5.55111512312578e-14 hm5C_site_61000 DeepMRMD:0.78263688;iRNA_m5C:5.55111512312578e-14 61001 chr18 28934998 28934998 1 + C T SKCM 28934997 + 28934977 28935017 41 CACCCCGAGTTAGCCAATGCCCACAATGTCATTGTGACAGA CACCCCGAGTTAGCCAATGCCTACAATGTCATTGTGACAGA < 41bp 0.48920644889432 0.752522767886972 0.024820805 0.91590196 prediction 0.505045535773943 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28934997 chr18:28934998 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_107856 0 0 0 0 0 unknown 0.500231630702273 0.500231660906876 0.83180392 6.04092045275451e-08 hm5C_site_61001 DeepMRMD:0.83180392;iRNA_m5C:6.04092045275451e-08 61002 chr2 108910250 108910250 1 + C T COAD 108910249 + 108910229 108910269 41 GAGGCCAAACCAGATGATCTCCTCATCTGCACCTACCCTAA GAGGCCAAACCAGATGATCTCTTCATCTGCACCTACCCTAA < 41bp 0.510217019016854 0.762734627043402 0.072037846 0.13811642 prediction 0.505035216053096 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910249 chr2:108910250 nonsynonymous SNV 0.855 4 22 hm5C_associated_SNPs_107857 0 0 0 0 1 exosome 0.500227070756958 0.500236405467412 0 1.86694209078908e-05 hm5C_site_61002 DeepMRMD:0;iRNA_m5C:1.86694209078908e-05 61003 chr22 23637323 23637323 1 + T C COAD 23637321 + 23637301 23637341 41 GGCGAGAGCACGGACAGACTCATGGGGAAGGGCCAGGTCCA GGCGAGAGCACGGACAGACTCACGGGGAAGGGCCAGGTCCA < 41bp 0.522742444767012 0.775252539866996 0.7725233 0.7956047 prediction 0.505020190199968 Functional Gain - BCR ENSG00000186716 CDS Human protein_coding chr22:23637321 chr22:23637323 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_107858 0 0 1 0 1 Ribosome 0.500231643921089 0.500231643920995 0.0461628000000001 0 hm5C_site_61003 DeepMRMD:0.0461628000000001;iRNA_m5C:0 61004 chr9 130891884 130891884 1 + C A rs536307775 130891883 + 130891863 130891903 41 CTACCACCAATGCGCGGAGACCGGTAGTGGCCCCGAATGTC CTACCACCAATGCGCGGAGACAGGTAGTGGCCCCGAATGTC < 41bp 0.499112724339188 0.752508680332888 0.43235028 0.5011777 prediction 0.505017360665776 Functional Gain - PTGES2-AS1 ENSG00000232850 downstream Human lincRNA chr9:130891883 chr9:130891884 . . 0 22 hm5C_associated_SNPs_107859 0 0 0 0 0 unknown 0.500231563612647 0.500231643896987 0.0023553999999999 1.60568679685724e-07 hm5C_site_61004 DeepMRMD:0.0023553999999999;iRNA_m5C:1.60568679685724e-07 61005 chr2 99169339 99169339 1 + C T LUAD 99169338 + 99169318 99169358 41 CCAGATCAACACCCTGAAAACCCAAGTGAGTTACTACGCAG CCAGATCAACACCCTGAAAACTCAAGTGAGTTACTACGCAG < 41bp 0.525941854715938 0.778450259865086 0.2648108 0.659691 prediction 0.505016810298295 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99169338 chr2:99169339 synonymous SNV . 0 22 hm5C_associated_SNPs_107860 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921041 0.319382 0 hm5C_site_61005 DeepMRMD:0.319382;iRNA_m5C:0 61006 chr22 46671226 46671226 1 + T C STAD 46671224 + 46671204 46671244 41 TGTTGGCCCTGAAATTTTCCCATGATGCTTATTTTTACCTG TGTTGGCCCTGAAATTTTCCCACGATGCTTATTTTTACCTG < 41bp 0.564501359900623 0.817002601406163 0.106040746 0.026004255 prediction 0.505002483011079 Functional Gain - TTC38 ENSG00000075234 CDS Human protein_coding chr22:46671224 chr22:46671226 synonymous SNV . 0 23 hm5C_associated_SNPs_107861 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61006 DeepMRMD:0;iRNA_m5C:0 61007 chr1 40879873 40879873 1 + C T SKCM 40879872 + 40879852 40879892 41 CAGCTACCTCGGAAAAGCTCCCCGAAATCCACAGCGCCTGT CAGCTACCTCGGAAAAGCTCCTCGAAATCCACAGCGCCTGT < 41bp 0.482062171677888 0.752497707375143 0.13048929 0.690806 prediction 0.504995414750286 Functional Gain - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40879872 chr1:40879873 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_107862 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.381612 0 hm5C_site_61007 DeepMRMD:0.381612;iRNA_m5C:0 61008 chr12 122405975 122405975 1 + C T SKCM 122405974 + 122405954 122405994 41 ACATCTGCTATTGTTTGCCACCCGAACGGGGTGGCCGGCAT ACATCTGCTATTGTTTGCCACTCGAACGGGGTGGCCGGCAT < 41bp 0.483936837820382 0.752493606971446 0.07451898 0.93029916 prediction 0.504987213942893 Functional Gain - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122405974 chr12:122405975 nonsynonymous SNV 0.255 3 22 hm5C_associated_SNPs_107863 0 0 0 0 1 chromatin 0.500231614748487 0.500231683339891 0.86059832 1.37182808446212e-07 hm5C_site_61008 DeepMRMD:0.86059832;iRNA_m5C:1.37182808446212e-07 61009 chr4 71232648 71232648 1 + T A LUAD 71232644 + 71232624 71232664 41 TTCCCAACCAAGACCCTATCCACCTGGACCTCCATTTTTCC TTCCCAACCAAGACCCTATCCACCAGGACCTCCATTTTTCC < 41bp 0.433634011456854 0.752488098292841 0.002791196 0.0045447946 prediction 0.504976196585681 Functional Gain - SMR3A ENSG00000109208 CDS Human protein_coding chr4:71232644 chr4:71232648 synonymous SNV . 0 25 hm5C_associated_SNPs_107864 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_61009 DeepMRMD:0;iRNA_m5C:0 61010 chr22 18073043 18073043 1 + T G rs60550410 18073040 + 18073020 18073060 41 GTCCCTGCGCTTGCCGCCCTCTCTCTAGCTGTTTCACTTAG GTCCCTGCGCTTGCCGCCCTCTCGCTAGCTGTTTCACTTAG < 41bp 0.361549607090649 0.75248710871565 0.25150216 0.25799993 prediction 0.5049742174313 Functional Gain - SLC25A18 ENSG00000182902 UTR3 Human protein_coding chr22:18073040 chr22:18073043 . . 0 24 hm5C_associated_SNPs_107865 0 0 0 0 0 exosome 0.500231643921791 0.500231643921093 0 0 hm5C_site_61010 DeepMRMD:0;iRNA_m5C:0 61011 chr19 57999333 57999333 1 + C G rs113628862 57999332 + 57999312 57999352 41 GGCTCCGATGGCGGCGGCCGCCCTGAGGGACCCCGCTCAGG GGCTCCGATGGCGGCGGCCGCGCTGAGGGACCCCGCTCAGG < 41bp 0.456475835849824 0.752485775321464 0.15168151 0.33130902 prediction 0.504971550642928 Functional Gain - ZNF419 ENSG00000105136;ENSG00000268107 CDS Human other chr19:57999332 chr19:57999333 synonymous SNV . 0 22 hm5C_associated_SNPs_107866 0 0 1 0 1 exosome 0.500231643920367 0.500231643921096 0 1.45905509896238e-12 hm5C_site_61011 DeepMRMD:0;iRNA_m5C:1.45905509896238e-12 61012 chr13 33628097 33628097 1 + C T SKCM 33628096 + 33628076 33628116 41 TATTTATTGATGGTGACTATCCCGAGAGCATGAAGAATAAC TATTTATTGATGGTGACTATCTCGAGAGCATGAAGAATAAC < 41bp 0.523675884918722 0.776160995136146 0.20932892 0.21877563 prediction 0.504970220434848 Functional Gain - KL ENSG00000133116 CDS Human protein_coding chr13:33628096 chr13:33628097 nonsynonymous SNV 0.947 4 22 hm5C_associated_SNPs_107867 0 0 0 0 0 exosome 0.500231643925544 0.500231644023356 0 1.95624627608026e-10 hm5C_site_61012 DeepMRMD:0;iRNA_m5C:1.95624627608026e-10 61013 chr7 150217337 150217337 1 + C T SKCM 150217336 + 150217316 150217356 41 TCATCTCCTCCTGCCCAGGGCCCCATGCTATTGTCCTAGTT TCATCTCCTCCTGCCCAGGGCTCCATGCTATTGTCCTAGTT < 41bp 0.522267858694186 0.774732923082905 0.039547652 0.2510909 prediction 0.504930128777438 Functional Gain - GIMAP7 ENSG00000179144 CDS Human protein_coding chr7:150217336 chr7:150217337 nonsynonymous SNV 0.407 4 22 hm5C_associated_SNPs_107868 0 0 0 0 0 exosome 0.500231643921092 0.500231643908222 0 0 hm5C_site_61013 DeepMRMD:0;iRNA_m5C:0 61014 chr11 61563566 61563566 1 + C G COAD 61563562 + 61563542 61563582 41 AGTATCCGGGGTATTGGGCCCAAGCGGGCTGTGGACCTCAT AGTATCCGGGGTATTGGGCCCAAGGGGGCTGTGGACCTCAT < 41bp 0.544952529934719 0.797416469475823 0.60692 0.9041797 prediction 0.504927879082208 Functional Gain - FEN1 ENSG00000168496 CDS Human protein_coding chr11:61563562 chr11:61563566 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_107869 0 0 1 0 0 Cytosol 0.500231643910803 0.500232044078089 0.5945194 8.00334572614858e-07 hm5C_site_61014 DeepMRMD:0.5945194;iRNA_m5C:8.00334572614858e-07 61015 chr12 8995829 8995829 1 + C T UCEC 8995828 + 8995808 8995848 41 CGACCCTTCTACAGCACAACCCGCAGCTTCCTTGGCATCCA CGACCCTTCTACAGCACAACCTGCAGCTTCCTTGGCATCCA < 41bp 0.510309462785099 0.762766834273507 0.22605631 0.18147296 prediction 0.504914742976815 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:8995828 chr12:8995829 nonsynonymous SNV 0.180 2 22 hm5C_associated_SNPs_107870 1 0 0 0 0 exosome 0.500231633644878 0.500231499970535 0 0 hm5C_site_61015 DeepMRMD:0;iRNA_m5C:0 not specified not specified 61016 chr7 72301284 72301284 1 + T C rs138480824 72301282 + 72301262 72301302 41 CCCTCACAAGGGAAAAAGACCTTGATGAAGTTCTGCAGACC CCCTCACAAGGGAAAAAGACCTCGATGAAGTTCTGCAGACC < 41bp 0.488839247329243 0.752452739298897 0.17302674 0.4624551 prediction 0.504905478597794 Functional Gain - SBDSP1 ENSG00000225648 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:72301282 chr7:72301284 . . 0 23 hm5C_associated_SNPs_107871 0 0 1 0 1 unknown 0.500232993376934 0.500231643891774 0 0 hm5C_site_61016 DeepMRMD:0;iRNA_m5C:0 61017 chr9 104079699 104079699 1 + C T SKCM 104079698 + 104079678 104079718 41 CGCAAGGATCTCCTTCCAAACCCAAGCCTGAGGATCCCCGT CGCAAGGATCTCCTTCCAAACTCAAGCCTGAGGATCCCCGT < 41bp 0.531413064444167 0.783855870726423 0.052444905 0.07273775 prediction 0.50488561256451 Functional Gain - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104079698 chr9:104079699 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_107872 0 0 0 0 2 cytosol 0.500231643920634 0.500231643921094 0 9.2015284280933e-13 hm5C_site_61017 DeepMRMD:0;iRNA_m5C:9.2015284280933e-13 61018 chr1 28599254 28599254 1 + C T SKCM 28599253 + 28599233 28599273 41 GCCCCCCAGGCACCTACACCCCCTAGTGAACAGAGCAGCCC GCCCCCCAGGCACCTACACCCTCTAGTGAACAGAGCAGCCC < 41bp 0.534033087678681 0.786473400074852 0.009419769 0.827762 prediction 0.504880624792343 Functional Gain - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28599253 chr1:28599254 nonsynonymous SNV 0.874 0 22 hm5C_associated_SNPs_107873 0 0 1 0 1 Ribosome 0.500231644011422 0.500231642090616 0.655524 0 hm5C_site_61018 DeepMRMD:0.655524;iRNA_m5C:0 61019 chr19 55899415 55899415 1 + T C ESCA 55899413 + 55899393 55899433 41 AAGTACCGCCCCGACCTGCGCATGGTGAGCTGGGGTTTGGG AAGTACCGCCCCGACCTGCGCACGGTGAGCTGGGGTTTGGG < 41bp 0.496313066248662 0.752434414058902 0.41057217 0.25429255 prediction 0.504868828117803 Functional Gain - RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899413 chr19:55899415 nonsynonymous SNV 0.815 3 23 hm5C_associated_SNPs_107874 0 0 1 0 1 Cytosol 0.500231643925448 0.500231644463835 0 1.07677444738385e-09 hm5C_site_61019 DeepMRMD:0;iRNA_m5C:1.07677444738385e-09 61020 chr2 234235820 234235820 1 + C G rs2304773 234235819 + 234235799 234235839 41 CGCCACAGACAGCACCGATGCCGAAGAGGACAAAATCCCCA CGCCACAGACAGCACCGATGCGGAAGAGGACAAAATCCCCA < 41bp 0.605537067601055 0.857971431288877 0.14775273 0.528179 prediction 0.504868727375642 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234235819 chr2:234235820 synonymous SNV . 0 22 hm5C_associated_SNPs_107875 0 0 0 0 2 Endoplasmic reticulum 0.500231643919303 0.500231643921054 0.0563579999999999 3.50208750887759e-12 hm5C_site_61020 DeepMRMD:0.0563579999999999;iRNA_m5C:3.50208750887759e-12 61021 chr16 68108047 68108047 1 + C T SKCM 68108046 + 68108026 68108066 41 GCTCCATGCTGCCCAGTCTTCCCGGGAAATTTGGTAAGAGG GCTCCATGCTGCCCAGTCTTCTCGGGAAATTTGGTAAGAGG < 41bp 0.505180640972397 0.757605276441369 0.8059978 0.38970944 prediction 0.504849270937943 Functional Gain - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68108046 chr16:68108047 synonymous SNV . 0 22 hm5C_associated_SNPs_107876 0 0 0 0 1 Ribosome 0.500231644168378 0.500231629957002 0 0 hm5C_site_61021 DeepMRMD:0;iRNA_m5C:0 61022 chr8 82644768 82644768 1 + C G rs79561719 82644767 + 82644747 82644787 41 CGCCTTTCCGGTCTGGGTCCCCGAGAGGACTGCCTTGCTCA CGCCTTTCCGGTCTGGGTCCCGGAGAGGACTGCCTTGCTCA < 41bp 0.549430279526383 0.801849517563632 0.7750568 0.91778016 prediction 0.504838476074497 Functional Gain - CHMP4C ENSG00000164695 UTR5 Human protein_coding chr8:82644767 chr8:82644768 . . 0 22 hm5C_associated_SNPs_107877 0 0 1 0 0 Ribosome 0.5002316439211 0.500231643905404 0.28544672 0 hm5C_site_61022 DeepMRMD:0.28544672;iRNA_m5C:0 61023 chr12 5154349 5154349 1 + T A BRCA 5154345 + 5154325 5154365 41 GAGCTGCTCGTGCGCTTCTTCGCCTGCCCCAGCAAGGCAGG GAGCTGCTCGTGCGCTTCTTCGCCAGCCCCAGCAAGGCAGG < 41bp 0.622168963045256 0.874582918120444 0.14710438 0.23779318 prediction 0.504827910150375 Functional Gain - KCNA5 ENSG00000130037 CDS Human protein_coding chr12:5154345 chr12:5154349 nonsynonymous SNV 0.998 2 25 hm5C_associated_SNPs_107878 0 0 0 0 0 exosome 0.500231643921211 0.500231643921121 0 0 hm5C_site_61023 DeepMRMD:0;iRNA_m5C:0 61024 chrX 117959293 117959293 1 + T C UCEC 117959291 + 117959271 117959311 41 GCCCATTCCATGCTGAGGTCCCTGGGGAGAAGTCTCGGTCC GCCCATTCCATGCTGAGGTCCCCGGGGAGAAGTCTCGGTCC < 41bp 0.504263777429404 0.756674890377462 0.72835296 0.8021637 prediction 0.504822225896117 Functional Gain - ZCCHC12 ENSG00000174460 CDS Human protein_coding chrX:117959291 chrX:117959293 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_107879 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.14762148 0 hm5C_site_61024 DeepMRMD:0.14762148;iRNA_m5C:0 61025 chr12 96653588 96653588 1 + C A BRCA 96653587 + 96653567 96653607 41 GCAGCCTTAGTCCAGTTGCTCCGCTGAGTCCTGCCAGGCTG GCAGCCTTAGTCCAGTTGCTCAGCTGAGTCCTGCCAGGCTG < 41bp 0.520037390416592 0.7724430648449 0.05561644 0.5320569 prediction 0.504811348856616 Functional Gain - ELK3 ENSG00000111145 CDS Human protein_coding chr12:96653587 chr12:96653588 nonsynonymous SNV 0.083 4 22 hm5C_associated_SNPs_107880 0 0 0 0 2 Nucleus 0.500228731436474 0.500224089469492 0.0641138000000001 0 hm5C_site_61025 DeepMRMD:0.0641138000000001;iRNA_m5C:0 61026 chr16 70500097 70500097 1 + C A UCEC 70500096 + 70500076 70500116 41 CTGCCTCCCCGTGGAGAACCCCGAGGCCCCCGTGGAAGCCT CTGCCTCCCCGTGGAGAACCCAGAGGCCCCCGTGGAAGCCT < 41bp 0.519114595056794 0.771519403829291 0.59513915 0.84485996 prediction 0.504809617544995 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70500096 chr16:70500097 synonymous SNV . 0 22 hm5C_associated_SNPs_107881 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0.49944162 0 hm5C_site_61026 DeepMRMD:0.49944162;iRNA_m5C:0 61027 chr5 178293284 178293284 1 + T C rs567321883 178293282 + 178293262 178293302 41 GGACGTGGCTGTGCTCTTTACCTGGGATGAGTGGAGAAAGC GGACGTGGCTGTGCTCTTTACCCGGGATGAGTGGAGAAAGC < 41bp 0.526111027374413 0.778513033455611 0.75203294 0.9213813 prediction 0.504804012162395 Functional Gain - ZNF354B ENSG00000178338 CDS Human protein_coding chr5:178293282 chr5:178293284 nonsynonymous SNV 0.116 0 23 hm5C_associated_SNPs_107882 0 0 1 0 2 nucleoplasm 0.500231643920972 0.50023164392108 0.33869672 2.16715534406831e-13 hm5C_site_61027 DeepMRMD:0.33869672;iRNA_m5C:2.16715534406831e-13 61028 chr3 73024219 73024219 1 + C G LUSC 73024218 + 73024198 73024238 41 ACACTTTATGTGGACGAATCCCGCAAGTTTTTCTGAAGCAA ACACTTTATGTGGACGAATCCGGCAAGTTTTTCTGAAGCAA < 41bp 0.447372390094668 0.75240003816016 0.17643726 0.78920496 prediction 0.50480007632032 Functional Gain - GXYLT2 ENSG00000172986 CDS Human protein_coding chr3:73024218 chr3:73024219 nonsynonymous SNV 0.996 2 22 hm5C_associated_SNPs_107883 0 0 1 0 1 cytosol 0.500237528665624 0.500231643961761 0.57840992 0 hm5C_site_61028 DeepMRMD:0.57840992;iRNA_m5C:0 61029 chr19 35753487 35753487 1 + C G OV 35753486 + 35753466 35753506 41 GTGGTATGCCTGGCTGCCTTCCTCATCTTCCTCCTCCTGGG GTGGTATGCCTGGCTGCCTTCGTCATCTTCCTCCTCCTGGG < 41bp 0.432914177306181 0.752393482961327 0.12864637 0.14932266 prediction 0.504786965922654 Functional Gain - LSR ENSG00000105699 CDS Human protein_coding chr19:35753486 chr19:35753487 nonsynonymous SNV 0.880 3 22 hm5C_associated_SNPs_107884 0 0 1 0 1 chromatin 0.500231643921011 0.500231643921092 0 1.62092561595273e-13 hm5C_site_61029 DeepMRMD:0;iRNA_m5C:1.62092561595273e-13 61030 chr6 154360642 154360642 1 + C A rs9282815 154360638 + 154360618 154360658 41 CCCGAAAAGTCTCGGTGCTCCTGGCTACCTCGCACAGCGGT CCCGAAAAGTCTCGGTGCTCCTGGATACCTCGCACAGCGGT < 41bp 0.619638747051431 0.872031414125482 0.3615693 0.41786945 prediction 0.504785334148103 Functional Gain - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154360638 chr6:154360642 nonsynonymous SNV 0.000 1 25 hm5C_associated_SNPs_107885 0 0 0 0 0 exosome 0.500231631185197 0.500231632021347 0 1.67230052028344e-09 hm5C_site_61030 DeepMRMD:0;iRNA_m5C:1.67230052028344e-09 61031 chr2 172953167 172953167 1 + C G rs3821186 172953163 + 172953143 172953183 41 AACTTCCCGGCATCCGCGCTCTAGCCTGAACCCTGGCCTGG AACTTCCCGGCATCCGCGCTCTAGGCTGAACCCTGGCCTGG < 41bp 0.572165627161243 0.82455669045755 0.1476278 0.54939 prediction 0.504782126592615 Functional Gain - DLX1 ENSG00000144355 UTR3 Human protein_coding chr2:172953163 chr2:172953167 . . 0 25 hm5C_associated_SNPs_107886 0 0 0 0 0 exosome 0.500231643920982 0.500231643921108 0.0987800000000001 2.52020626589911e-13 hm5C_site_61031 DeepMRMD:0.0987800000000001;iRNA_m5C:2.52020626589911e-13 61032 chr1 177247763 177247763 1 + C T BLCA 177247762 + 177247742 177247782 41 CCTGAACTCCACAGCTATCTCCCAGTTCTGGGCCATGGACA CCTGAACTCCACAGCTATCTCTCAGTTCTGGGCCATGGACA < 41bp 0.51546600276445 0.767853651968195 0.07737544 0.086375505 prediction 0.50477529840749 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177247762 chr1:177247763 synonymous SNV . 0 22 hm5C_associated_SNPs_107887 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_61032 DeepMRMD:0;iRNA_m5C:0 61033 chr14 97321568 97321568 1 + T C GBM 97321566 + 97321546 97321586 41 CTTGGAAATTTATAGGTGTACTTGGTAGATTATGGCCTTGC CTTGGAAATTTATAGGTGTACTCGGTAGATTATGGCCTTGC < 41bp 0.477096880593068 0.75237804639442 0.3079744 0.31517684 prediction 0.504756092788841 Functional Gain - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97321566 chr14:97321568 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_107888 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_61033 DeepMRMD:0;iRNA_m5C:0 61034 chr10 134218210 134218210 1 + C A rs539073500 134218206 + 134218186 134218226 41 CTGTCAACGACAGCCATGGCCGGGCTCCCGAGGAGGGGGAT CTGTCAACGACAGCCATGGCCGGGATCCCGAGGAGGGGGAT < 41bp 0.652285296699693 0.904651828812563 0.9108609 0.91227144 prediction 0.504733064225741 Functional Gain - PWWP2B ENSG00000171813 CDS Human protein_coding chr10:134218206 chr10:134218210 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_107889 0 0 1 0 1 chromatin 0.500231643942132 0.500231644117689 0.00282108000000014 3.51114692875854e-10 hm5C_site_61034 DeepMRMD:0.00282108000000014;iRNA_m5C:3.51114692875854e-10 61035 chr2 99013541 99013541 1 + C A LUSC 99013540 + 99013520 99013560 41 AGTGGAGCAGCTGGGGTCCTCCCTGGACACCCTGCAGACCA AGTGGAGCAGCTGGGGTCCTCACTGGACACCCTGCAGACCA < 41bp 0.502951654643293 0.755315564618913 0.21376699 0.1812056 prediction 0.504727819951239 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:99013540 chr2:99013541 synonymous SNV . 0 22 hm5C_associated_SNPs_107890 0 0 0 0 0 nucleus 0.500231643921093 0.500231643921094 0 3.5527136788005e-15 hm5C_site_61035 DeepMRMD:0;iRNA_m5C:3.5527136788005e-15 61036 chr9 95872979 95872979 1 + C G LUSC 95872975 + 95872955 95872995 41 ATCCATGCCCAGCCCCTGCACAGCCGCCTGCCCAGCCGCCA ATCCATGCCCAGCCCCTGCACAGCGGCCTGCCCAGCCGCCA < 41bp 0.582432573318179 0.834785783386213 0.24006844 0.71351814 prediction 0.504706420136067 Functional Gain - CARD19 ENSG00000165233 CDS Human protein_coding chr9:95872975 chr9:95872979 nonsynonymous SNV 0.423 0 25 hm5C_associated_SNPs_107891 0 0 1 0 1 Ribosome 0.500231643650328 0.5002316711789 0.42703628 5.50571435109504e-08 hm5C_site_61036 DeepMRMD:0.42703628;iRNA_m5C:5.50571435109504e-08 61037 chr16 10995377 10995377 1 + C A HNSC 10995376 + 10995356 10995396 41 ATGTTTTCTCTGCAGCCTTCCCAGAGGAGCTTCCGGCAGAC ATGTTTTCTCTGCAGCCTTCCAAGAGGAGCTTCCGGCAGAC < 41bp 0.506425382488481 0.758765643954819 0.5526931 0.682179 prediction 0.504680522932676 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:10995376 chr16:10995377 nonsynonymous SNV 0.945 3 22 hm5C_associated_SNPs_107892 0 0 0 0 2 Nucleus 0.5002316408787 0.500231393108829 0.2589718 0 hm5C_site_61037 DeepMRMD:0.2589718;iRNA_m5C:0 61038 chr6 31431420 31431420 1 + C G SKCM 31431419 + 31431399 31431439 41 CCATCACCCGCTGGGAACAGCCTGAGAGAAGTAGGGCCTCT CCATCACCCGCTGGGAACAGCGTGAGAGAAGTAGGGCCTCT < 41bp 0.457028375281584 0.752337453522903 0.19617552 0.32712385 prediction 0.504674907045806 Functional Gain - HCP5 ENSG00000206337 ncRNA_exonic Human sense_overlapping chr6:31431419 chr6:31431420 . . 0 22 hm5C_associated_SNPs_107893 0 0 0 0 0 unknown 0.500231643920863 0.500231643921092 0 4.58300064565265e-13 hm5C_site_61038 DeepMRMD:0;iRNA_m5C:4.58300064565265e-13 61039 chr10 13682137 13682137 1 + T A rs3949884 13682133 + 13682113 13682153 41 TACCAGGAGAGTGGTGTCCACGCCTGAGAGGTTTCACTCCC TACCAGGAGAGTGGTGTCCACGCCAGAGAGGTTTCACTCCC < 41bp 0.544060373697851 0.796396463220115 0.07135618 0.26851296 prediction 0.504672179044528 Functional Gain - PRPF18;FRMD4A ENSG00000239665 intronic Human processed_transcript chr10:13682133 chr10:13682137 . . 0 25 hm5C_associated_SNPs_107894 0 0 0 0 0 unknown 0.50023164366829 0.500231643770146 0 2.03711714164001e-10 hm5C_site_61039 DeepMRMD:0;iRNA_m5C:2.03711714164001e-10 61040 chr5 79366562 79366562 1 + C A UCEC 79366561 + 79366541 79366581 41 GATGCTGACGGAGATGGGATCCTGAATGAGCAGGTACCTGC GATGCTGACGGAGATGGGATCATGAATGAGCAGGTACCTGC < 41bp 0.525600233457357 0.777936318475226 0.22912174 0.33357567 prediction 0.504672170035738 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79366561 chr5:79366562 nonsynonymous SNV 0.991 1 22 hm5C_associated_SNPs_107895 0 0 0 0 2 exosome 0.500231643922003 0.500231671474568 0 5.51051289043869e-08 hm5C_site_61040 DeepMRMD:0;iRNA_m5C:5.51051289043869e-08 61041 chr13 33590903 33590903 1 + C G HNSC 33590899 + 33590879 33590919 41 CCGGGAGACTCCCGGAACGCCAGTCTGCCGTTGGGCGCCCC CCGGGAGACTCCCGGAACGCCAGTGTGCCGTTGGGCGCCCC < 41bp 0.462219831932659 0.752336007498208 0.17592904 0.22598502 prediction 0.504672014996416 Functional Gain - KL ENSG00000133116 CDS Human protein_coding chr13:33590899 chr13:33590903 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_107896 0 0 0 0 0 exosome 0.500231644020884 0.500231725225601 0 1.62409434567579e-07 hm5C_site_61041 DeepMRMD:0;iRNA_m5C:1.62409434567579e-07 61042 chr20 30358241 30358241 1 + T C OV 30358239 + 30358219 30358259 41 AGATGTGCCACTCCTGTAATCATCGATGAAATTCTACCCTC AGATGTGCCACTCCTGTAATCACCGATGAAATTCTACCCTC < 41bp 0.520173643701746 0.772500710012186 0.33727482 0.4233619 prediction 0.50465413262088 Functional Gain - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30358239 chr20:30358241 nonsynonymous SNV 0.000 0 23 hm5C_associated_SNPs_107897 0 0 1 0 1 Cytosol 0.500231643921053 0.500231643921045 0 0 hm5C_site_61042 DeepMRMD:0;iRNA_m5C:0 61043 chr4 1222190 1222190 1 + T G rs572808854 1222188 + 1222168 1222208 41 TGAAGACCCTCGGGCTTGGCCTTCGGGGGTGGGGCTGCCCC TGAAGACCCTCGGGCTTGGCCTGCGGGGGTGGGGCTGCCCC < 41bp 0.425990442531984 0.752326781439734 0.56148434 0.7989837 prediction 0.504653562879467 Functional Gain - CTBP1 ENSG00000159692 intronic Human protein_coding chr4:1222188 chr4:1222190 . . 0 23 hm5C_associated_SNPs_107898 0 0 0 0 0 Ribosome 0.500231643921092 0.500231643921092 0.47499872 0 hm5C_site_61043 DeepMRMD:0.47499872;iRNA_m5C:0 61044 chr6 36654524 36654524 1 + C G rs74801436 36654520 + 36654500 36654540 41 AGAAGAAGGGCACCCTAGTTCTACCTCAGGCAGCTCAAGCA AGAAGAAGGGCACCCTAGTTCTACGTCAGGCAGCTCAAGCA < 41bp 0.484294704103573 0.752310064830785 0.13243508 0.1725893 prediction 0.50462012966157 Functional Gain - CDKN1A ENSG00000124762 UTR3 Human protein_coding chr6:36654520 chr6:36654524 . . 0 25 hm5C_associated_SNPs_107899 0 0 1 11 0 Cytosol 0.500231643920999 0.500231643921038 0 7.7715611723761e-14 hm5C_site_61044 DeepMRMD:0;iRNA_m5C:7.7715611723761e-14 61045 chr9 140147732 140147732 1 + C G rs570548330 140147731 + 140147711 140147751 41 CAACCTGCTTGGCCCGGCCACCGAGTGGAACCATGGCCTCC CAACCTGCTTGGCCCGGCCACGGAGTGGAACCATGGCCTCC < 41bp 0.601794941044498 0.854103942704404 0.8303635 0.9097829 prediction 0.504618003319812 Functional Gain - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140147731 chr9:140147732 synonymous SNV . 0 22 hm5C_associated_SNPs_107900 0 0 0 0 0 chromatin 0.50023164133167 0.500231637838843 0.1588388 0 hm5C_site_61045 DeepMRMD:0.1588388;iRNA_m5C:0 61046 chr20 31889103 31889103 1 + C A COAD 31889099 + 31889079 31889119 41 TCAATAACTCTGCAGCTTCCCTGACAATGCCCACCCTGGAC TCAATAACTCTGCAGCTTCCCTGAAAATGCCCACCCTGGAC < 41bp 0.329512240130863 0.752298609797128 0.032040417 0.09219462 prediction 0.504597219594255 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31889099 chr20:31889103 nonsynonymous SNV 0.004 1 25 hm5C_associated_SNPs_107901 0 0 0 0 1 exosome 0.500231643921155 0.500231643921092 0 0 hm5C_site_61046 DeepMRMD:0;iRNA_m5C:0 61047 chrX 144904543 144904543 1 + C A LIHC 144904539 + 144904519 144904559 41 GCTAAAAGTAATGCCTTTTGCTGGCGTCCTTGAACATATTG GCTAAAAGTAATGCCTTTTGCTGGAGTCCTTGAACATATTG < 41bp 0.662998888474719 0.915295248373306 0.23420513 0.21140468 prediction 0.504592719797174 Functional Gain - SLITRK2 ENSG00000185985 CDS Human protein_coding chrX:144904539 chrX:144904543 synonymous SNV . 0 25 hm5C_associated_SNPs_107902 0 0 0 0 0 Cytosol 0.50023164580703 0.500231643922478 0 0 hm5C_site_61047 DeepMRMD:0;iRNA_m5C:0 61048 chr4 1374774 1374774 1 + C G rs28522910 1374770 + 1374750 1374790 41 GGCAGCTGCAGAAGCAGGAGCGCCCGGGTAGGTCTGGGCAA GGCAGCTGCAGAAGCAGGAGCGCCGGGGTAGGTCTGGGCAA < 41bp 0.548072611575253 0.800363998867558 0.6090539 0.8156955 prediction 0.50458277458461 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1374770 chr4:1374774 nonsynonymous SNV 0.008 2 25 hm5C_associated_SNPs_107903 0 0 1 0 1 Nucleus 0.500231643921164 0.500231644824692 0.4132832 1.80705694852179e-09 hm5C_site_61048 DeepMRMD:0.4132832;iRNA_m5C:1.80705694852179e-09 61049 chr4 156135350 156135350 1 + T A rs144160377 156135346 + 156135326 156135366 41 AAGAGCATGCGCACAGTAACCAACTTTTTCATTGCCAATCT AAGAGCATGCGCACAGTAACCAACATTTTCATTGCCAATCT < 41bp 0.603979400405556 0.856261588389348 0.20022127 0.16226733 prediction 0.504564375967583 Functional Gain - NPY2R ENSG00000185149 CDS Human protein_coding chr4:156135346 chr4:156135350 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_107904 0 0 0 0 0 unknown 0.50023550978004 0.500259015194756 0 4.70108294321481e-05 hm5C_site_61049 DeepMRMD:0;iRNA_m5C:4.70108294321481e-05 Blood protein levels 61050 chr4 5529187 5529187 1 + C A rs77138388 5529183 + 5529163 5529203 41 GGATGAAAGGCTGCCTTTTCCCCCCCTTCTGAGCGTTTCTG GGATGAAAGGCTGCCTTTTCCCCCACTTCTGAGCGTTTCTG < 41bp 0.37479977182985 0.752277542433666 0.1381729 0.1499224 prediction 0.504555084867333 Functional Gain - LINC01587 ENSG00000082929 UTR3 Human processed_transcript chr4:5529183 chr4:5529187 . . 0 25 hm5C_associated_SNPs_107905 0 0 0 0 1 unknown 0.500231643921097 0.500231646584481 0 5.32676835973689e-09 hm5C_site_61050 DeepMRMD:0;iRNA_m5C:5.32676835973689e-09 61051 chr7 99689103 99689103 1 + C G SKCM 99689099 + 99689079 99689119 41 CCTATGCTCTGTGTCACTGTCTCCCGGTGCTCAGCACAGAC CCTATGCTCTGTGTCACTGTCTCCGGGTGCTCAGCACAGAC < 41bp 0.541929223899607 0.794198080316652 0.22974116 0.5655411 prediction 0.50453771283409 Functional Gain - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99689099 chr7:99689103 nonsynonymous SNV 0.886 4 25 hm5C_associated_SNPs_107906 0 0 1 0 2 Ribosome 0.500231643920754 0.500231668889928 0.1310822 4.99383472352122e-08 hm5C_site_61051 DeepMRMD:0.1310822;iRNA_m5C:4.99383472352122e-08 61052 chr11 64853932 64853932 1 + C T SKCM 64853931 + 64853911 64853951 41 ATGAACGTGCTGCCCAGCTACCCCGAAACACGGCACCTGCC ATGAACGTGCTGCCCAGCTACTCCGAAACACGGCACCTGCC < 41bp 0.532304650867887 0.784567379835479 0.22850159 0.47430995 prediction 0.504525457935183 Functional Gain - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64853931 chr11:64853932 nonsynonymous SNV 0.995 5 22 hm5C_associated_SNPs_107907 0 0 1 0 1 Ribosome 0.500231643921102 0.500231643921047 0 0 hm5C_site_61052 DeepMRMD:0;iRNA_m5C:0 61053 chr14 89069204 89069204 1 + C T UCEC 89069203 + 89069183 89069223 41 AACCAGATAAACCTGCAAGTCCCAAGTTTATAGTGACGCTG AACCAGATAAACCTGCAAGTCTCAAGTTTATAGTGACGCTG < 41bp 0.510709250237812 0.76296986731944 0.41543806 0.713051 prediction 0.504521234163255 Functional Gain - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89069203 chr14:89069204 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107908 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643829456 0.426102 0 hm5C_site_61053 DeepMRMD:0.426102;iRNA_m5C:0 61054 chr1 18152822 18152822 1 + C A LUSC 18152818 + 18152798 18152838 41 GATGGCCTGCGGGGGCAACACCCTCTATCCCGGGTTCACAA GATGGCCTGCGGGGGCAACACCCTATATCCCGGGTTCACAA < 41bp 0.339899740740049 0.752258360952179 0.6669379 0.58829993 prediction 0.504516721904358 Functional Gain - ACTL8 ENSG00000117148 CDS Human protein_coding chr1:18152818 chr1:18152822 synonymous SNV . 0 25 hm5C_associated_SNPs_107909 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_61054 DeepMRMD:0;iRNA_m5C:0 61055 chr6 31379068 31379068 1 + C A UCEC 31379064 + 31379044 31379084 41 TGAAGACCAAGACACACTATCACGCTATGCATGCAGACTGC TGAAGACCAAGACACACTATCACGATATGCATGCAGACTGC < 41bp 0.409115786899503 0.752252441733768 0.21742669 0.42615202 prediction 0.504504883467536 Functional Gain - MICA ENSG00000204520 CDS Human protein_coding chr6:31379064 chr6:31379068 nonsynonymous SNV 0.000 3 25 hm5C_associated_SNPs_107910 0 0 1 0 2 Ribosome 0.500231643365494 0.500231643585012 0 4.39035474641969e-10 hm5C_site_61055 DeepMRMD:0;iRNA_m5C:4.39035474641969e-10 61056 chr22 26839957 26839957 1 + C G rs117704397 26839956 + 26839936 26839976 41 TCAGCCACGGAACGTGTGATCCGCTTACCTCACTGCCTACA TCAGCCACGGAACGTGTGATCGGCTTACCTCACTGCCTACA < 41bp 0.450125880433138 0.752252334136073 0.11493838 0.44794264 prediction 0.504504668272146 Functional Gain - ASPHD2;HPS4 ENSG00000128203 UTR3 Human protein_coding chr22:26839956 chr22:26839957 . . 0 22 hm5C_associated_SNPs_107911 0 0 0 4 0 unknown 0.500231643921094 0.500231643921092 0 0 hm5C_site_61056 DeepMRMD:0;iRNA_m5C:0 61057 chr12 101381432 101381432 1 + C A HNSC 101381428 + 101381408 101381448 41 GACTGCTACACTGCCCCTTTCAGCCAGCAAAGGATCCATCA GACTGCTACACTGCCCCTTTCAGCAAGCAAAGGATCCATCA < 41bp 0.337746672256163 0.752247061924237 0.77795136 0.86937374 prediction 0.504494123848474 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101381428 chr12:101381432 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_107912 0 0 0 1 1 exosome 0.500231581331703 0.500231644026231 0.18284476 1.25389055805059e-07 hm5C_site_61057 DeepMRMD:0.18284476;iRNA_m5C:1.25389055805059e-07 61058 chr20 48600475 48600475 1 + C A rs34261470 48600471 + 48600451 48600491 41 TGCTCATCTGGGACTCTGTCCTGGCGCCCCAAGCCCAGCCA TGCTCATCTGGGACTCTGTCCTGGAGCCCCAAGCCCAGCCA < 41bp 0.670698813348985 0.922942216026026 0.58402777 0.82936627 prediction 0.504486805354083 Functional Gain - SNAI1 ENSG00000124216 CDS Human protein_coding chr20:48600471 chr20:48600475 nonsynonymous SNV 0.537 0 25 hm5C_associated_SNPs_107913 0 0 1 0 0 Cytosol 0.500229878348809 0.500212474154441 0.490677 0 hm5C_site_61058 DeepMRMD:0.490677;iRNA_m5C:0 61059 chr14 100795375 100795375 1 + C G rs149283899 100795371 + 100795351 100795391 41 TGGCTCAGCCCCGCTGGCCACAGCCGGCCAGGTGAGCAGGG TGGCTCAGCCCCGCTGGCCACAGCGGGCCAGGTGAGCAGGG < 41bp 0.565178440009208 0.81741711407823 0.9098635 0.9089111 prediction 0.504477348138044 Functional Gain - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100795371 chr14:100795375 nonsynonymous SNV 0.574 0 25 hm5C_associated_SNPs_107914 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61059 DeepMRMD:0;iRNA_m5C:0 61060 chr8 125072475 125072475 1 + C A LUSC 125072474 + 125072454 125072494 41 GTTGAGCCACCAGACATCACCCAGATCTACCCGGTTCCTGC GTTGAGCCACCAGACATCACCAAGATCTACCCGGTTCCTGC < 41bp 0.498540265131049 0.752234549309051 0.14625403 0.21501625 prediction 0.504469098618102 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125072474 chr8:125072475 nonsynonymous SNV 0.826 0 22 hm5C_associated_SNPs_107915 0 0 0 0 2 exosome 0.500231646182791 0.500231643921093 0 0 hm5C_site_61060 DeepMRMD:0;iRNA_m5C:0 61061 chr14 64935338 64935338 1 + C A LUAD 64935334 + 64935314 64935354 41 GCTTCTGATCAGCCAGAGCCCACACGGGGGGCCTGGGCCTC GCTTCTGATCAGCCAGAGCCCACAAGGGGGGCCTGGGCCTC < 41bp 0.665211396117303 0.917444838102178 0.26178852 0.39788997 prediction 0.50446688396975 Functional Gain - AKAP5 ENSG00000179841 CDS Human protein_coding chr14:64935334 chr14:64935338 synonymous SNV . 0 25 hm5C_associated_SNPs_107916 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_61061 DeepMRMD:0;iRNA_m5C:0 61062 chr22 30766905 30766905 1 + T C rs150773011 30766908 - 30766888 30766928 41 TGCTGTTTGTCGTGCTCCCACTCAGACAGGCACTGCTCATC TGCTGTTTGTCGTGCTCCCACTCGGACAGGCACTGCTCATC < 41bp 0.501299110008241 0.753529439836118 0.05701843 0.08910075 prediction 0.504460659655753 Functional Gain - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30766908 chr22:30766905 synonymous SNV . 0 24 hm5C_associated_SNPs_107917 0 0 0 0 0 exosome 0.500231639295886 0.500231634755213 0 0 hm5C_site_61062 DeepMRMD:0;iRNA_m5C:0 61063 chr10 12875507 12875507 1 + C G rs78091588 12875506 + 12875486 12875526 41 CCCTCACCTCTCCCTCTCCCCCAGAACCTTGGCCAGAATTG CCCTCACCTCTCCCTCTCCCCGAGAACCTTGGCCAGAATTG < 41bp 0.447526815522779 0.75222436310079 0.083013445 0.40214354 prediction 0.504448726201581 Functional Gain - CAMK1D ENSG00000183049 UTR3 Human protein_coding chr10:12875506 chr10:12875507 . . 0 22 hm5C_associated_SNPs_107918 0 0 0 0 0 Ribosome 0.500231643921045 0.50023164382096 0 0 hm5C_site_61063 DeepMRMD:0;iRNA_m5C:0 61064 chr16 30199278 30199278 1 + C A COAD 30199277 + 30199257 30199297 41 CTACAGGGTGACAGCTCAATCCGGTACTTTGAGATCACTTC CTACAGGGTGACAGCTCAATCAGGTACTTTGAGATCACTTC < 41bp 0.538675504493063 0.790897194312296 0.70692235 0.91867864 prediction 0.504443379638466 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199277 chr16:30199278 synonymous SNV . 0 22 hm5C_associated_SNPs_107919 0 0 0 0 1 Cytosol 0.500231602485527 0.500228598126659 0.42351258 0 hm5C_site_61064 DeepMRMD:0.42351258;iRNA_m5C:0 61065 chr5 131670586 131670586 1 + G A SKCM 131670587 - 131670567 131670607 41 TGAAGAGAAGCACACCTCCTCCCCAGAACAGTACTGCAGCT TGAAGAGAAGCACACCTCCTCTCCAGAACAGTACTGCAGCT < 41bp 0.518443552393291 0.770660640466463 0.0713141 0.9441602 prediction 0.504434176146345 Functional Gain - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131670587 chr5:131670586 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107920 0 0 0 0 1 Endoplasmic reticulum 0.500231643921186 0.500231644019034 0.8883204 1.95696125970812e-10 hm5C_site_61065 DeepMRMD:0.8883204;iRNA_m5C:1.95696125970812e-10 61066 chr1 246810817 246810817 1 + C G UCEC 246810813 + 246810793 246810833 41 GACAGAGCCGTTGATTTCACCAGGCTGTGACCGTATACCTC GACAGAGCCGTTGATTTCACCAGGGTGTGACCGTATACCTC < 41bp 0.462744427313087 0.752213080510666 0.46885747 0.8641499 prediction 0.504426161021332 Functional Gain - CNST ENSG00000162852 CDS Human protein_coding chr1:246810813 chr1:246810817 synonymous SNV . 0 25 hm5C_associated_SNPs_107921 0 0 1 0 0 Ribosome 0.500231644099118 0.500231625239164 0.7282998 0 hm5C_site_61066 DeepMRMD:0.7282998;iRNA_m5C:0 61067 chr8 90933391 90933391 1 + T A LAML 90933387 + 90933367 90933407 41 TAAATTTAAGGACTGGGTATCAAGTAAACGAAGGTAAAGAT TAAATTTAAGGACTGGGTATCAAGAAAACGAAGGTAAAGAT < 41bp 0.439629013502014 0.752205412732323 0.40284002 0.86154926 prediction 0.504410825464647 Functional Gain - OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90933387 chr8:90933391 nonsynonymous SNV 0.999 1 25 hm5C_associated_SNPs_107922 0 0 1 0 2 Cytosol 0.500231643900663 0.500231643920462 0.72309852 3.95989907531202e-11 hm5C_site_61067 DeepMRMD:0.72309852;iRNA_m5C:3.95989907531202e-11 61068 chr5 71616321 71616321 1 + C G OV 71616317 + 71616297 71616337 41 GGAGGCTCCGGCTCTGTCAGCTGCCGCTGCCCTCTCGGAGG GGAGGCTCCGGCTCTGTCAGCTGCGGCTGCCCTCTCGGAGG < 41bp 0.582764188329218 0.834964663643115 0.5479069 0.8129606 prediction 0.504400950627793 Functional Gain - PTCD2 ENSG00000049883 CDS Human protein_coding chr5:71616317 chr5:71616321 nonsynonymous SNV 0.782 0 25 hm5C_associated_SNPs_107923 0 0 0 0 1 chromatin 0.500231643921091 0.500231643919882 0.5301074 0 hm5C_site_61068 DeepMRMD:0.5301074;iRNA_m5C:0 61069 chr21 47409530 47409530 1 + C G SKCM 47409529 + 47409509 47409549 41 TCCTGTGTTCCAGGGAAGACCCGGGGACCTCGGACCTGTTG TCCTGTGTTCCAGGGAAGACCGGGGGACCTCGGACCTGTTG < 41bp 0.610695999448081 0.862893406988047 0.92184126 0.94366336 prediction 0.50439481507993 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47409529 chr21:47409530 synonymous SNV . 0 22 hm5C_associated_SNPs_107924 0 0 1 0 2 exosome 0.500231645541614 0.500231645311285 0.0436441999999999 0 hm5C_site_61069 DeepMRMD:0.0436441999999999;iRNA_m5C:0 61070 chr3 44929214 44929214 1 + T A LUAD 44929210 + 44929190 44929230 41 CTAGCATCGCCAAACACACCCTGGTGGTGCTCGACCCGAGG CTAGCATCGCCAAACACACCCTGGAGGTGCTCGACCCGAGG < 41bp 0.595954638576125 0.848151251941915 0.34044272 0.69329673 prediction 0.504393226731579 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44929210 chr3:44929214 nonsynonymous SNV 0.238 3 25 hm5C_associated_SNPs_107925 0 0 0 0 2 exosome 0.50023165066494 0.500231644143133 0.38659346 0 hm5C_site_61070 DeepMRMD:0.38659346;iRNA_m5C:0 61071 chr19 12800595 12800595 1 + C A LUSC 12800591 + 12800571 12800611 41 AGACCCGGATAAGCTGGAAGCAGCCGTTGCGGTTGGCGAAG AGACCCGGATAAGCTGGAAGCAGCAGTTGCGGTTGGCGAAG < 41bp 0.65903999013569 0.911219616775567 0.34041548 0.44295534 prediction 0.504359253279754 Functional Gain - FBXW9 ENSG00000132004 CDS Human protein_coding chr19:12800591 chr19:12800595 nonsynonymous SNV 0.179 4 25 hm5C_associated_SNPs_107926 0 0 0 0 0 Cytosol 0.500231644327798 0.500231643924861 0 0 hm5C_site_61071 DeepMRMD:0;iRNA_m5C:0 61072 chr22 20939299 20939299 1 + T C UCEC 20939297 + 20939277 20939317 41 ACCGCCATTCACGGCCCACCCATCACGTATGTCCAGCTGGG ACCGCCATTCACGGCCCACCCACCACGTATGTCCAGCTGGG < 41bp 0.518916707542944 0.771092335557441 0.10042071 0.16733295 prediction 0.504351256028995 Functional Gain - MED15 ENSG00000099917 CDS Human protein_coding chr22:20939297 chr22:20939299 nonsynonymous SNV 0.961 3 23 hm5C_associated_SNPs_107927 0 0 1 0 1 Cytosol 0.5002316438222 0.500231643915839 0 1.87278859087314e-10 hm5C_site_61072 DeepMRMD:0;iRNA_m5C:1.87278859087314e-10 61073 chr18 76755287 76755287 1 + C A PRAD 76755283 + 76755263 76755303 41 AGACAGTGATGGGCCCGGGCCTGGCGCCCATGCTGGCCCCC AGACAGTGATGGGCCCGGGCCTGGAGCCCATGCTGGCCCCC < 41bp 0.657478982358967 0.909649525919926 0.4250258 0.60188305 prediction 0.504341087121919 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76755283 chr18:76755287 nonsynonymous SNV 0.058 0 25 hm5C_associated_SNPs_107928 0 0 0 0 0 exosome 0.500231643921082 0.500231643921169 0.2037661 1.74082970261225e-13 hm5C_site_61073 DeepMRMD:0.2037661;iRNA_m5C:1.74082970261225e-13 61074 chr5 153432624 153432624 1 + T C LUAD 153432622 + 153432602 153432642 41 GTTATCTTCACCTCGGGAGACATGAGTGTCTATTACATGAT GTTATCTTCACCTCGGGAGACACGAGTGTCTATTACATGAT < 41bp 0.553430387650803 0.805600483823935 0.2517996 0.29571563 prediction 0.504340192346264 Functional Gain - MFAP3 ENSG00000037749 CDS Human protein_coding chr5:153432622 chr5:153432624 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_107929 0 0 1 0 0 Endoplasmic reticulum 0.500231643897055 0.500231643757174 0 0 hm5C_site_61074 DeepMRMD:0;iRNA_m5C:0 61075 chr15 23811409 23811409 1 + C A LUSC 23811405 + 23811385 23811425 41 GACTCAGGAAGTGGCGGAAGCCCCCCCGGCTGCATCCTCCC GACTCAGGAAGTGGCGGAAGCCCCACCGGCTGCATCCTCCC < 41bp 0.344715368940851 0.752169213697539 0.15623498 0.7567142 prediction 0.504338427395077 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811405 chr15:23811409 synonymous SNV . 0 25 hm5C_associated_SNPs_107930 0 0 0 0 0 chromatin 0.5002316439212 0.500231643921262 0.5134284 1.24789067967868e-13 hm5C_site_61075 DeepMRMD:0.5134284;iRNA_m5C:1.24789067967868e-13 61076 chr19 1924653 1924653 1 + C A rs3810415 1924652 + 1924632 1924672 41 TCGGCCGCCCTCCCGTCCTCCCAGAGCTGCTGGCGCTGAGG TCGGCCGCCCTCCCGTCCTCCAAGAGCTGCTGGCGCTGAGG < 41bp 0.521220726002213 0.773383198442068 0.45507473 0.2245959 prediction 0.504324944879711 Functional Gain - SCAMP4 ENSG00000227500 UTR3 Human protein_coding chr19:1924652 chr19:1924653 . . 0 22 hm5C_associated_SNPs_107931 0 0 1 0 0 Ribosome 0.500231643920891 0.500231643921093 0 4.04565270173407e-13 hm5C_site_61076 DeepMRMD:0;iRNA_m5C:4.04565270173407e-13 61077 chr15 99874230 99874230 1 + C A UCEC 99874226 + 99874206 99874246 41 TGTGCCTTTCTCTGCAGTACCTCACTGTGGACCGAAATCGT TGTGCCTTTCTCTGCAGTACCTCAATGTGGACCGAAATCGT < 41bp 0.318699427371634 0.752160173037377 0.021891356 0.8376912 prediction 0.504320346074754 Functional Gain - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99874226 chr15:99874230 nonsynonymous SNV 0.995 3 25 hm5C_associated_SNPs_107932 0 0 0 1 1 Cytosol 0.500226956701011 0.500231501473693 0.6753824 9.08954536438245e-06 hm5C_site_61077 DeepMRMD:0.6753824;iRNA_m5C:9.08954536438245e-06 61078 chr19 5623138 5623138 1 + C A rs143563020 5623134 + 5623114 5623154 41 CGACTGGAGCGGTTCCCTCGCAGGCGGCGCCATTTTGTGCT CGACTGGAGCGGTTCCCTCGCAGGAGGCGCCATTTTGTGCT < 41bp 0.618926780183185 0.871080934303061 0.9166477 0.9252555 prediction 0.504308308239753 Functional Gain - SAFB ENSG00000160633 UTR5 Human protein_coding chr19:5623134 chr19:5623138 . . 0 25 hm5C_associated_SNPs_107933 0 0 1 0 0 chromatin 0.500231643910452 0.500231643921072 0.0172156000000001 2.12390105502891e-11 hm5C_site_61078 DeepMRMD:0.0172156000000001;iRNA_m5C:2.12390105502891e-11 61079 chr4 2901077 2901077 1 + C A UCEC 2901076 + 2901056 2901096 41 AGTCCCGTTCCCCAGGGTCTCCGGTAGGGGAAGGCACTGGA AGTCCCGTTCCCCAGGGTCTCAGGTAGGGGAAGGCACTGGA < 41bp 0.508747003863393 0.760896762040469 0.598567 0.89630735 prediction 0.504299516354152 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2901076 chr4:2901077 nonsynonymous SNV 0.207 3 22 hm5C_associated_SNPs_107934 0 0 1 0 2 Ribosome 0.500231643888672 0.500231643920912 0.5954807 6.44799769133897e-11 hm5C_site_61079 DeepMRMD:0.5954807;iRNA_m5C:6.44799769133897e-11 61080 chr1 113659009 113659009 1 + T C UCEC 113659007 + 113658987 113659027 41 GCAACTCTGAGGCAGGCAGTCATCAGCAACTTATGCCTCCT GCAACTCTGAGGCAGGCAGTCACCAGCAACTTATGCCTCCT < 41bp 0.577274620806039 0.829413870693864 0.10263708 0.1294502 prediction 0.50427849977565 Functional Gain - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113659007 chr1:113659009 synonymous SNV . 0 23 hm5C_associated_SNPs_107935 0 0 1 0 1 Nucleus 0.500231642708488 0.500231644271236 0 3.12549763847869e-09 hm5C_site_61080 DeepMRMD:0;iRNA_m5C:3.12549763847869e-09 61081 chrX 140993515 140993515 1 + C A UCEC 140993511 + 140993491 140993531 41 AGTTCTCCTGAGGGGAAGGACTCCCTGTCTCCTCTAGAGAT AGTTCTCCTGAGGGGAAGGACTCCATGTCTCCTCTAGAGAT < 41bp 0.33413566487813 0.75213556602419 0.2797855 0.95233977 prediction 0.504271132048381 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140993511 chrX:140993515 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_107936 0 0 0 0 0 exosome 0.500231641038549 0.50023164349023 0.90467954 4.9033630489248e-09 hm5C_site_61081 DeepMRMD:0.90467954;iRNA_m5C:4.9033630489248e-09 61082 chr1 171086394 171086394 1 + T G ESCA 171086391 + 171086371 171086411 41 TTGGCCCTTGTAGTCCCTACCAGTTTAGGCTGGTGGGCCCA TTGGCCCTTGTAGTCCCTACCAGGTTAGGCTGGTGGGCCCA < 41bp 0.355458284319428 0.752133908224355 0.42465824 0.8950131 prediction 0.50426781644871 Functional Gain - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171086391 chr1:171086394 nonsynonymous SNV 0.994 3 24 hm5C_associated_SNPs_107937 0 0 0 0 0 exosome 0.500231643921092 0.50023164392021 0.7900262 0 hm5C_site_61082 DeepMRMD:0.7900262;iRNA_m5C:0 61083 chr19 14578588 14578588 1 + C A ESCA 14578587 + 14578567 14578607 41 AAGTTCCTGGCGGTGCTGGGCCGGGGTCATTTTGGGAAGGT AAGTTCCTGGCGGTGCTGGGCAGGGGTCATTTTGGGAAGGT < 41bp 0.519539832694875 0.771670619803159 0.6487496 0.83836603 prediction 0.504261574216568 Functional Gain - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578587 chr19:14578588 synonymous SNV . 0 22 hm5C_associated_SNPs_107938 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0.37923286 0 hm5C_site_61083 DeepMRMD:0.37923286;iRNA_m5C:0 61084 chr12 113629445 113629445 1 + T A OV 113629441 + 113629421 113629461 41 CCACCTGAATGTCCCCAGCACTGGTCATCCAGCCACCAGTG CCACCTGAATGTCCCCAGCACTGGACATCCAGCCACCAGTG < 41bp 0.60763635592483 0.859764899695125 0.21474081 0.4141584 prediction 0.504257087540589 Functional Gain - RITA1 ENSG00000139405 CDS Human protein_coding chr12:113629441 chr12:113629445 synonymous SNV . 0 25 hm5C_associated_SNPs_107939 0 0 1 0 0 Ribosome 0.50023164392111 0.500231643921093 0 0 hm5C_site_61084 DeepMRMD:0;iRNA_m5C:0 61085 chr11 55322437 55322437 1 + C A UCEC 55322433 + 55322413 55322453 41 ATACAAATTCTTTTTACTTTCCAGCTTCCCTTTTGTGGCCC ATACAAATTCTTTTTACTTTCCAGATTCCCTTTTGTGGCCC < 41bp 0.368454504633184 0.752124047825574 0.09456563 0.2953912 prediction 0.504248095651148 Functional Gain - OR4C15 ENSG00000181939 CDS Human protein_coding chr11:55322433 chr11:55322437 nonsynonymous SNV 0.885 3 25 hm5C_associated_SNPs_107940 0 0 0 0 0 unknown 0.500231660476516 0.500231643964039 0 0 hm5C_site_61085 DeepMRMD:0;iRNA_m5C:0 61086 chr19 2247848 2247848 1 + C A PAAD 2247844 + 2247824 2247864 41 CTGGCCCCCCTGGGGTGAAGCGGCCTCCACCCCCGCTGATG CTGGCCCCCCTGGGGTGAAGCGGCATCCACCCCCGCTGATG < 41bp 0.656241746036616 0.908363736597614 0.6377219 0.86480725 prediction 0.504243981121996 Functional Gain - SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2247844 chr19:2247848 nonsynonymous SNV 0.645 4 25 hm5C_associated_SNPs_107941 0 0 1 0 1 Cytosol 0.500231643955576 0.500231643921099 0.4541707 0 hm5C_site_61086 DeepMRMD:0.4541707;iRNA_m5C:0 61087 chr19 41726681 41726681 1 + C A CESC 41726680 + 41726660 41726700 41 TGGCTTCGGGATGGACAGATCCTGGAGCTCGCGGACAGCAC TGGCTTCGGGATGGACAGATCATGGAGCTCGCGGACAGCAC < 41bp 0.512457174510398 0.764578448743546 0.25082862 0.5248578 prediction 0.504242548466295 Functional Gain - AXL ENSG00000167601 CDS Human protein_coding chr19:41726680 chr19:41726681 nonsynonymous SNV 0.037 4 22 hm5C_associated_SNPs_107942 0 0 0 0 1 Nucleus 0.50023164398013 0.500231643898476 0.0497156000000001 0 hm5C_site_61087 DeepMRMD:0.0497156000000001;iRNA_m5C:0 61088 chr10 51769427 51769427 1 + C T SKCM 51769426 + 51769406 51769446 41 CAGTCTTGGCCCCCACCTTTCCCGTGTGCGATCTCTGGAGC CAGTCTTGGCCCCCACCTTTCTCGTGTGCGATCTCTGGAGC < 41bp 0.511552013208077 0.763672125103414 0.064947456 0.066628516 prediction 0.504240223790674 Functional Gain - AGAP6 ENSG00000204149 CDS Human protein_coding chr10:51769426 chr10:51769427 synonymous SNV . 0 22 hm5C_associated_SNPs_107943 0 0 1 0 0 chromatin 0.500231623692697 0.500231643765115 0 4.01448352338463e-08 hm5C_site_61088 DeepMRMD:0;iRNA_m5C:4.01448352338463e-08 61089 chr9 107267011 107267011 1 + C G BLCA 107267007 + 107266987 107267027 41 CTGGATGACAGGCTGTCTCACTGCCATGGTGGAAATGATGT CTGGATGACAGGCTGTCTCACTGCGATGGTGGAAATGATGT < 41bp 0.572786886387133 0.824905236424378 0.171076 0.3747272 prediction 0.504236700074489 Functional Gain - OR13F1 ENSG00000186881 CDS Human protein_coding chr9:107267007 chr9:107267011 synonymous SNV . 0 25 hm5C_associated_SNPs_107944 0 0 0 0 0 unknown 0.500231643921095 0.500235848322739 0 8.40880328900617e-06 hm5C_site_61089 DeepMRMD:0;iRNA_m5C:8.40880328900617e-06 61090 chr1 2121850 2121850 1 + C G rs145881709 2121846 + 2121826 2121866 41 AGGGGTGGCAGGAGAAAACCCATCCGAGTCCTGCAGGTCAG AGGGGTGGCAGGAGAAAACCCATCGGAGTCCTGCAGGTCAG < 41bp 0.473355581455877 0.752115114383489 0.405054 0.5546729 prediction 0.504230228766978 Functional Gain - FAAP20 ENSG00000269554 CDS Human other chr1:2121846 chr1:2121850 nonsynonymous SNV . 0 25 hm5C_associated_SNPs_107945 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.1093458 0 hm5C_site_61090 DeepMRMD:0.1093458;iRNA_m5C:0 61091 chr2 113940052 113940052 1 + C A OV 113940048 + 113940028 113940068 41 CAGTGGATGATGGGTGACTACAGACTCCCTGACCACCCCCA CAGTGGATGATGGGTGACTACAGAATCCCTGACCACCCCCA < 41bp 0.355344086866691 0.75211443804035 0.48284692 0.5012075 prediction 0.504228876080701 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113940048 chr2:113940052 nonsynonymous SNV 0.057 1 25 hm5C_associated_SNPs_107946 0 0 0 0 0 chromatin 0.500231644010517 0.500231793733257 0.00241500000000006 2.9944548041172e-07 hm5C_site_61091 DeepMRMD:0.00241500000000006;iRNA_m5C:2.9944548041172e-07 61092 chr22 18640461 18640461 1 + A G LUAD 18640458 + 18640438 18640478 41 AGGCGTTTGGGCTCCTGAGGCAAATCTGTCAGTCCATCCTG AGGCGTTTGGGCTCCTGAGGCAAGTCTGTCAGTCCATCCTG < 41bp 0.498000206670494 0.752106347522276 0.40013725 0.76783705 prediction 0.504212695044553 Functional Gain - USP18 ENSG00000184979 CDS Human protein_coding chr22:18640458 chr22:18640461 nonsynonymous SNV 0.000 0 24 hm5C_associated_SNPs_107947 0 0 1 0 0 Ribosome 0.50023164392146 0.500231643921095 0.5356741 0 hm5C_site_61092 DeepMRMD:0.5356741;iRNA_m5C:0 61093 chr5 68555730 68555730 1 + C G PRAD 68555729 + 68555709 68555749 41 TGGCCAAATCTTTTGGGAGCCCCAATAGAGCTTATACACAT TGGCCAAATCTTTTGGGAGCCGCAATAGAGCTTATACACAT < 41bp 0.45338177566536 0.752105794808514 0.41821176 0.36875248 prediction 0.504211589617028 Functional Gain - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68555729 chr5:68555730 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107948 0 0 1 0 2 Cytosol 0.500231643921092 0.500231644025325 0 2.08464356887816e-10 hm5C_site_61093 DeepMRMD:0;iRNA_m5C:2.08464356887816e-10 61094 chr3 15064822 15064822 1 + T A rs2230441 15064818 + 15064798 15064838 41 CCTGAGAAGTCCCCTGATAGCTACTCCCACGTTTGTGGCAG CCTGAGAAGTCCCCTGATAGCTACACCCACGTTTGTGGCAG < 41bp 0.402258902361453 0.752102278341595 0.08881742 0.22085702 prediction 0.50420455668319 Functional Gain - NR2C2 ENSG00000177463 CDS Human protein_coding chr3:15064818 chr3:15064822 synonymous SNV . 0 25 hm5C_associated_SNPs_107949 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_61094 DeepMRMD:0;iRNA_m5C:0 61095 chr19 35633635 35633635 1 + C G rs61753924 35633634 + 35633614 35633654 41 TTCCCCCCAGGTCTGTCCACCCGCAGGCGGTAGAAACACCT TTCCCCCCAGGTCTGTCCACCGGCAGGCGGTAGAAACACCT < 41bp 0.429323228163384 0.752095505934418 0.019670397 0.26289183 prediction 0.504191011868837 Functional Gain - FXYD1 ENSG00000266964 CDS Human protein_coding chr19:35633634 chr19:35633635 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_107950 0 0 1 0 2 Cytosol 0.500231643933321 0.50023164389329 0 0 hm5C_site_61095 DeepMRMD:0;iRNA_m5C:0 61096 chr12 57843705 57843705 1 + C A BLCA 57843701 + 57843681 57843721 41 GAGGGGGCTCATGCTGTGTACCCACGGCCCGGCGCCCCCTG GAGGGGGCTCATGCTGTGTACCCAAGGCCCGGCGCCCCCTG < 41bp 0.336243658848488 0.752084679923995 0.07489428 0.20340762 prediction 0.504169359847989 Functional Gain - INHBC ENSG00000175189 CDS Human protein_coding chr12:57843701 chr12:57843705 nonsynonymous SNV 0.911 5 25 hm5C_associated_SNPs_107951 0 0 0 0 0 exosome 0.500231644905098 0.500231643921095 0 0 hm5C_site_61096 DeepMRMD:0;iRNA_m5C:0 61097 chr12 131687328 131687328 1 + C G rs139397384 131687327 + 131687307 131687347 41 CATTTTCAGGTGAGGGACGGCCGGTGTCATCGTTGGAGCTT CATTTTCAGGTGAGGGACGGCGGGTGTCATCGTTGGAGCTT < 41bp 0.460205149778409 0.752080724045794 0.7943009 0.91321707 prediction 0.504161448091588 Functional Gain - LINC01257 ENSG00000204603 ncRNA_exonic Human lincRNA chr12:131687327 chr12:131687328 . . 0 22 hm5C_associated_SNPs_107952 0 0 0 0 1 unknown 0.500231643922628 0.500231643921093 0.23783234 0 hm5C_site_61097 DeepMRMD:0.23783234;iRNA_m5C:0 61098 chr19 17607293 17607293 1 + C A rs114645429 17607289 + 17607269 17607309 41 TGGGCACCTGGGGCTCAGTCCAGACGCAGCGCAGCCTAGTG TGGGCACCTGGGGCTCAGTCCAGAAGCAGCGCAGCCTAGTG < 41bp 0.421088066306693 0.752076867122789 0.3934397 0.42697203 prediction 0.504153734245579 Functional Gain - SLC27A1 ENSG00000269439 ncRNA_intronic Human lincRNA chr19:17607289 chr19:17607293 . . 0 25 hm5C_associated_SNPs_107953 0 0 0 0 0 Endoplasmic reticulum 0.500231643704645 0.500231643920746 0 4.32200941702376e-10 hm5C_site_61098 DeepMRMD:0;iRNA_m5C:4.32200941702376e-10 61099 chr19 9271853 9271853 1 + T C LIHC 9271851 + 9271831 9271871 41 TGTAGGCAGTGTGGCAAGGCCTTCAGGAACCAGTCAACGCT TGTAGGCAGTGTGGCAAGGCCTCCAGGAACCAGTCAACGCT < 41bp 0.563999685649254 0.816075466808986 0.081626534 0.9237784 prediction 0.504151562319463 Functional Gain - ZNF317 ENSG00000130803 CDS Human protein_coding chr19:9271851 chr19:9271853 nonsynonymous SNV 0.985 4 23 hm5C_associated_SNPs_107954 0 0 1 0 0 Nucleus 0.500231643921093 0.500231643922382 0.8475568 2.57860399699439e-12 hm5C_site_61099 DeepMRMD:0.8475568;iRNA_m5C:2.57860399699439e-12 61100 chr4 57397196 57397196 1 + C G rs28565512 57397195 + 57397175 57397215 41 ACTCCTCAAGGCCCGTGAACCCCGCCAGCTCCGCCACACCC ACTCCTCAAGGCCCGTGAACCGCGCCAGCTCCGCCACACCC < 41bp 0.600319601072533 0.85237343161202 0.15872318 0.23458084 prediction 0.504107661078973 Functional Gain - THEGL ENSG00000249693 CDS Human protein_coding chr4:57397195 chr4:57397196 synonymous SNV . 0 22 hm5C_associated_SNPs_107955 0 0 0 0 0 cytosol 0.500232309716139 0.500232016030651 0 0 hm5C_site_61100 DeepMRMD:0;iRNA_m5C:0 61101 chr1 177199053 177199053 1 + C A LUAD 177199052 + 177199032 177199072 41 CTCGGTTTAGAGGGCTTCGGCCGGCGGTGGCCCCATGGACA CTCGGTTTAGAGGGCTTCGGCAGGCGGTGGCCCCATGGACA < 41bp 0.513399672286681 0.765450449666102 0.9052297 0.9015418 prediction 0.504101554758842 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177199052 chr1:177199053 nonsynonymous SNV 0.066 0 22 hm5C_associated_SNPs_107956 0 0 0 0 0 Nucleus 0.500231643679583 0.500231643921093 0 4.83018514074729e-10 hm5C_site_61101 DeepMRMD:0;iRNA_m5C:4.83018514074729e-10 61102 chr22 35783041 35783041 1 + C T BLCA 35783040 + 35783020 35783060 41 GGCCTGGCCTTCTTCACCTTCCCCAACATTGCCAGTGCCAC GGCCTGGCCTTCTTCACCTTCTCCAACATTGCCAGTGCCAC < 41bp 0.472682078165752 0.752049624736607 0.047098428 0.960781 prediction 0.504099249473215 Functional Gain - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35783040 chr22:35783041 nonsynonymous SNV 0.973 4 22 hm5C_associated_SNPs_107957 0 0 1 0 0 exosome 0.500231643921092 0.500231643921092 0.921562 2.22044604925031e-16 hm5C_site_61102 DeepMRMD:0.921562;iRNA_m5C:2.22044604925031e-16 61103 chr19 9745191 9745191 1 + C A rs116808915 9745187 + 9745167 9745207 41 TCCCGCAGAAACTGTCTTTCCCGCCGACCAAAACTGCCCTT TCCCGCAGAAACTGTCTTTCCCGCAGACCAAAACTGCCCTT < 41bp 0.634712363360214 0.886761959052556 0.22812599 0.29827806 prediction 0.504099191384684 Functional Gain - ZNF561-AS1 ENSG00000267106 UTR3 Human processed_transcript chr19:9745187 chr19:9745191 . . 0 25 hm5C_associated_SNPs_107958 0 0 0 0 0 unknown 0.500231643921092 0.500231649742778 0 1.16433729324683e-08 hm5C_site_61103 DeepMRMD:0;iRNA_m5C:1.16433729324683e-08 61104 chr6 16295482 16295482 1 + C A rs77813716 16295481 + 16295461 16295501 41 ACCTGCTTTTCCCATCTCCCCCCAAGTCTGTTCCGTCAGAG ACCTGCTTTTCCCATCTCCCCACAAGTCTGTTCCGTCAGAG < 41bp 0.512908819888548 0.764954628450447 0.12333241 0.24009281 prediction 0.504091617123797 Functional Gain - GMPR ENSG00000137198 UTR3 Human protein_coding chr6:16295481 chr6:16295482 . . 0 22 hm5C_associated_SNPs_107959 0 0 1 0 0 Cytosol 0.500231643870716 0.500231651668114 0 1.55947950108981e-08 hm5C_site_61104 DeepMRMD:0;iRNA_m5C:1.55947950108981e-08 61105 chr22 38055211 38055211 1 + C G LUSC 38055210 + 38055190 38055230 41 GCGCGGGGGACGGCGCGGCCCCGCGCGTGCGCGCCGTGCTT GCGCGGGGGACGGCGCGGCCCGGCGCGTGCGCGCCGTGCTT < 41bp 0.576949466227888 0.828993103448036 0.27076113 0.7353448 prediction 0.504087274440295 Functional Gain - PDXP ENSG00000241360 CDS Human protein_coding chr22:38055210 chr22:38055211 nonsynonymous SNV 0.508 1 22 hm5C_associated_SNPs_107960 0 0 1 0 0 Ribosome 0.500231643779198 0.500231643921092 0.4706896 2.83788104127325e-10 hm5C_site_61105 DeepMRMD:0.4706896;iRNA_m5C:2.83788104127325e-10 61106 chr16 28507639 28507639 1 + A G COAD 28507636 + 28507616 28507656 41 GGCTGAGGTGAGCCCTTTCCCCAAACAGCCCCAGGTCCTGG GGCTGAGGTGAGCCCTTTCCCCAGACAGCCCCAGGTCCTGG < 41bp 0.500555150679152 0.752595380293198 0.22368062 0.38631707 prediction 0.504080459228091 Functional Gain - APOBR ENSG00000184730 CDS Human protein_coding chr16:28507636 chr16:28507639 nonsynonymous SNV 0.004 0 24 hm5C_associated_SNPs_107961 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61106 DeepMRMD:0;iRNA_m5C:0 61107 chrX 48340877 48340877 1 + C T COAD 48340876 + 48340856 48340896 41 CTGAGCTCCTATGATTCGGACCGCAGTTACCCACTGGACGT CTGAGCTCCTATGATTCGGACTGCAGTTACCCACTGGACGT < 41bp 0.502966415794981 0.755002502510259 0.21878597 0.16019452 prediction 0.504072173430555 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48340876 chrX:48340877 nonsynonymous SNV 0.858 0 22 hm5C_associated_SNPs_107962 1 0 1 0 3 Ribosome 0.500231643921088 0.500231643942146 0 4.21160883945504e-11 hm5C_site_61107 DeepMRMD:0;iRNA_m5C:4.21160883945504e-11 Mental retardation 9, X-linked Mental retardation 9, X-linked 61108 chr1 12854133 12854133 1 + C A LUSC 12854132 + 12854112 12854152 41 CTGGGCCAGATGGCCTGGAGCCTGGGCCCTGTCCTGCTTCC CTGGGCCAGATGGCCTGGAGCATGGGCCCTGTCCTGCTTCC < 41bp 0.509834710140821 0.761859372396898 0.8155399 0.77709734 prediction 0.504049324512154 Functional Gain - PRAMEF1 ENSG00000116721 CDS Human protein_coding chr1:12854132 chr1:12854133 synonymous SNV . 0 22 hm5C_associated_SNPs_107963 0 0 0 0 1 unknown 0.500231643570054 0.500231643921092 0 7.02075952929704e-10 hm5C_site_61108 DeepMRMD:0;iRNA_m5C:7.02075952929704e-10 61109 chr2 233899040 233899040 1 + C A LUAD 233899039 + 233899019 233899059 41 ACGGGAGGACCTGGAGCTCCCCCAGAGACCTCACTGATGCG ACGGGAGGACCTGGAGCTCCCACAGAGACCTCACTGATGCG < 41bp 0.497127839653891 0.752018444604092 0.3264123 0.38501525 prediction 0.504036889208184 Functional Gain - NEU2 ENSG00000115488 CDS Human protein_coding chr2:233899039 chr2:233899040 nonsynonymous SNV 0.445 4 22 hm5C_associated_SNPs_107964 0 0 0 0 0 exosome 0.50023167486532 0.500231585424716 0 0 hm5C_site_61109 DeepMRMD:0;iRNA_m5C:0 61110 chrX 89177650 89177650 1 + C G LUAD 89177646 + 89177626 89177666 41 AGAAGCTCACCGGAATAGCCCAGCCGAAGAAAAAGGTCAAG AGAAGCTCACCGGAATAGCCCAGCGGAAGAAAAAGGTCAAG < 41bp 0.55469503149128 0.806708812761751 0.21172899 0.2864138 prediction 0.504027562540942 Functional Gain - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177646 chrX:89177650 nonsynonymous SNV 0.001 1 25 hm5C_associated_SNPs_107965 0 0 0 0 0 exosome 0.500231643921275 0.500231643926854 0 1.11586295759025e-11 hm5C_site_61110 DeepMRMD:0;iRNA_m5C:1.11586295759025e-11 61111 chr11 120998805 120998805 1 + C T SKCM 120998804 + 120998784 120998824 41 GACGGCTACCAGGGCTGCTTCCCCAAGCGGGAGACCGTGTG GACGGCTACCAGGGCTGCTTCTCCAAGCGGGAGACCGTGTG < 41bp 0.540980735380085 0.792991631502203 0.7567146 0.968119 prediction 0.504021792244237 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:120998804 chr11:120998805 nonsynonymous SNV 0.996 3 22 hm5C_associated_SNPs_107966 0 0 0 0 0 exosome 0.500231643949965 0.500240568106007 0.4228088 1.78483120827355e-05 hm5C_site_61111 DeepMRMD:0.4228088;iRNA_m5C:1.78483120827355e-05 61112 chr10 38499714 38499714 1 + T C UCEC 38499712 + 38499692 38499732 41 TGTATTCGCTAGTTTATCTTCTTGACAGAGAAAGAGCATGG TGTATTCGCTAGTTTATCTTCTCGACAGAGAAAGAGCATGG < 41bp 0.517688836618068 0.769695226936149 0.060762644 0.24135426 prediction 0.50401278063616 Functional Gain - LOC100129055 ENSG00000224761 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38499712 chr10:38499714 . . 0 23 hm5C_associated_SNPs_107967 0 0 0 0 1 unknown 0.500231643921093 0.500231644073597 0 3.050084629308e-10 hm5C_site_61112 DeepMRMD:0;iRNA_m5C:3.050084629308e-10 61113 chr17 59489303 59489303 1 + C A rs199694628 59489299 + 59489279 59489319 41 CCGGGACTCTCACGCTCAAGCGCCCCGGCTTGAGGCCGGGA CCGGGACTCTCACGCTCAAGCGCCACGGCTTGAGGCCGGGA < 41bp 0.486122946528421 0.752005449296444 0.2690016 0.24373987 prediction 0.504010898592889 Functional Gain - C17orf82 ENSG00000187013 UTR5 Human lincRNA chr17:59489299 chr17:59489303 . . 0 25 hm5C_associated_SNPs_107968 0 0 0 0 0 unknown 0.500231643921249 0.500231643921013 0 0 hm5C_site_61113 DeepMRMD:0;iRNA_m5C:0 61114 chr1 156255562 156255562 1 + C A UCEC 156255558 + 156255538 156255578 41 GGGCTGAGGCAGTGGTGAGGCCGCCTGGCTGTTCCTGTGGG GGGCTGAGGCAGTGGTGAGGCCGCATGGCTGTTCCTGTGGG < 41bp 0.348085818158703 0.751995476123459 0.4057028 0.4254665 prediction 0.503990952246919 Functional Gain - TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156255558 chr1:156255562 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_107969 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_61114 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 61115 chr17 20884969 20884969 1 + T G rs55714915 20884966 + 20884946 20884986 41 TGGGACCTGAGCCCAGGGGACAGTGTGATCACCCCCAACGC TGGGACCTGAGCCCAGGGGACAGGGTGATCACCCCCAACGC < 41bp 0.651995586631884 0.903982440799287 0.30789763 0.9323287 prediction 0.503973708334805 Functional Gain - LOC339260 ENSG00000264660 ncRNA_exonic Human antisense chr17:20884966 chr17:20884969 . . 0 24 hm5C_associated_SNPs_107970 0 0 0 0 0 unknown 0.500231643921096 0.500231643922382 0.8646574 2.57194265884664e-12 hm5C_site_61115 DeepMRMD:0.8646574;iRNA_m5C:2.57194265884664e-12 61116 chr16 4382440 4382440 1 + C G PAAD 4382436 + 4382416 4382456 41 CAGCCCCACACCTGGCTCTCCAGGCTCCCCGCCCTCAGGTA CAGCCCCACACCTGGCTCTCCAGGGTCCCCGCCCTCAGGTA < 41bp 0.570987165793527 0.822969559320253 0.92743033 0.9305328 prediction 0.503964787053452 Functional Gain - GLIS2 ENSG00000126603 CDS Human protein_coding chr16:4382436 chr16:4382440 synonymous SNV . 0 25 hm5C_associated_SNPs_107971 0 0 0 0 1 Endoplasmic reticulum 0.500231643923148 0.500231643921092 0.00620494000000016 0 hm5C_site_61116 DeepMRMD:0.00620494000000016;iRNA_m5C:0 61117 chr5 177549749 177549749 1 + C G rs151163363 177549748 + 177549728 177549768 41 CTTGGTGGGAAGGCTGGGCCCCAGGAGTATCCACAGGCTCA CTTGGTGGGAAGGCTGGGCCCGAGGAGTATCCACAGGCTCA < 41bp 0.583015163453653 0.834988306945556 0.25906837 0.7172538 prediction 0.503946286983805 Functional Gain - N4BP3 ENSG00000145911 UTR3 Human protein_coding chr5:177549748 chr5:177549749 . . 0 22 hm5C_associated_SNPs_107972 0 0 0 0 0 chromatin 0.500231643921093 0.500231643921092 0.4345076 0 hm5C_site_61117 DeepMRMD:0.4345076;iRNA_m5C:0 61118 chr20 34487474 34487474 1 + C T SKCM 34487473 + 34487453 34487493 41 TCACTGGAGCCAGAAGAGAGCCCGGGAAAGAGGCATGTCCA TCACTGGAGCCAGAAGAGAGCTCGGGAAAGAGGCATGTCCA < 41bp 0.501239305891405 0.753206416635121 0.6745042 0.49750674 prediction 0.503934221487431 Functional Gain - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34487473 chr20:34487474 nonsynonymous SNV 0.976 0 22 hm5C_associated_SNPs_107973 0 0 1 0 1 Nucleus 0.500231646506385 0.500231652518239 0 1.20237086953523e-08 hm5C_site_61118 DeepMRMD:0;iRNA_m5C:1.20237086953523e-08 61119 chr16 1578782 1578782 1 + C G rs549157048 1578781 + 1578761 1578801 41 GACCAGCCGCCCACAGAGCCCCGAGCCCGTGGTCCCGGTGA GACCAGCCGCCCACAGAGCCCGGAGCCCGTGGTCCCGGTGA < 41bp 0.56780708038926 0.819773928039114 0.271875 0.82649577 prediction 0.503933695299708 Functional Gain - TMEM204 ENSG00000131634 UTR5 Human protein_coding chr16:1578781 chr16:1578782 . . 0 22 hm5C_associated_SNPs_107974 0 0 0 0 1 nucleolus 0.500231648994693 0.500231643921084 0.65299154 0 hm5C_site_61119 DeepMRMD:0.65299154;iRNA_m5C:0 61120 chr19 33600768 33600768 1 + C T SKCM 33600767 + 33600747 33600787 41 GAGCAGCAGAGCCCAGCTCTCCCCTGCAGCGGCTGCTGGGC GAGCAGCAGAGCCCAGCTCTCTCCTGCAGCGGCTGCTGGGC < 41bp 0.519685069328478 0.771648500941232 0.10014823 0.25272712 prediction 0.503926863225508 Functional Gain - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33600767 chr19:33600768 synonymous SNV . 0 22 hm5C_associated_SNPs_107975 0 0 1 0 0 Cytosol 0.500231643935334 0.500231640306623 0 0 hm5C_site_61120 DeepMRMD:0;iRNA_m5C:0 61121 chr3 52719980 52719980 1 + C G rs78053665 52719976 + 52719956 52719996 41 GCTCCGCGCGACACTGCGTGCCCGCGCACGCAGAGAGGCGG GCTCCGCGCGACACTGCGTGCCCGGGCACGCAGAGAGGCGG < 41bp 0.532457525858177 0.784409041925225 0.15724126 0.15866762 prediction 0.503903032134097 Functional Gain - GNL3 ENSG00000163938 UTR5 Human protein_coding chr3:52719976 chr3:52719980 . . 0 25 hm5C_associated_SNPs_107976 0 0 0 0 0 Ribosome 0.500231643320077 0.500231643938108 0 1.23606236357432e-09 hm5C_site_61121 DeepMRMD:0;iRNA_m5C:1.23606236357432e-09 61122 chr11 71507220 71507220 1 + C T UCEC 71507219 + 71507199 71507239 41 CACCACCGAGCTATGTGAGCCCCCACGCCCACCCGGGCCTG CACCACCGAGCTATGTGAGCCTCCACGCCCACCCGGGCCTG < 41bp 0.509967703662502 0.761912107365654 0.2369523 0.9604731 prediction 0.503888807406304 Functional Gain - ALG1L9P ENSG00000158483 CDS Human protein_coding chr11:71507219 chr11:71507220 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_107977 0 0 0 0 0 unknown 0.500231644050651 0.500231643921073 0.9209462 0 hm5C_site_61122 DeepMRMD:0.9209462;iRNA_m5C:0 61123 chr1 177247912 177247912 1 + C A LUAD 177247911 + 177247891 177247931 41 GCCAGCCTCGCTTCCGCCTGCCCAAGGAGAGGTGAGCACCC GCCAGCCTCGCTTCCGCCTGCACAAGGAGAGGTGAGCACCC < 41bp 0.513606391317905 0.765544389523298 0.33404619 0.39160395 prediction 0.503875996410787 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177247911 chr1:177247912 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_107978 0 0 0 0 0 Nucleus 0.500231643921093 0.500231643921287 0 3.8968828164343e-13 hm5C_site_61123 DeepMRMD:0;iRNA_m5C:3.8968828164343e-13 61124 chr10 89624228 89624228 1 + T C COAD 89624226 + 89624206 89624246 41 TTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGA TTCAGCCACAGGCTCCCAGACACGACAGCCATCATCAAAGA < 41bp 0.523032162811321 0.774966026106226 0.06020102 0.050652474 prediction 0.503867726589811 Functional Gain - PTEN ENSG00000171862 CDS Human protein_coding chr10:89624226 chr10:89624228 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_107979 0 0 1 0 1 Ribosome 0.500231641728207 0.500231679133342 0 7.4810270422887e-08 hm5C_site_61124 DeepMRMD:0;iRNA_m5C:7.4810270422887e-08 61125 chr13 113772793 113772793 1 + C G SKCM 113772792 + 113772772 113772812 41 GGGTGGCGCAGGTCATCATCCCCAGCACGTACGTCCCGGGC GGGTGGCGCAGGTCATCATCCGCAGCACGTACGTCCCGGGC < 41bp 0.426966372303333 0.751932945943821 0.20244405 0.42656913 prediction 0.503865891887642 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113772792 chr13:113772793 nonsynonymous SNV 0.010 4 22 hm5C_associated_SNPs_107980 0 0 0 0 1 insoluble cytoplasm 0.500231643929686 0.500231643302074 0 0 hm5C_site_61125 DeepMRMD:0;iRNA_m5C:0 61126 chr4 129764136 129764136 1 + C T SKCM 129764135 + 129764115 129764155 41 AACTACTTGGTCCCAGAATTCCCGATCCCAGCATAGGAGAA AACTACTTGGTCCCAGAATTCTCGATCCCAGCATAGGAGAA < 41bp 0.530686231949256 0.78260768426607 0.12658334 0.3727952 prediction 0.503842904633629 Functional Gain - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129764135 chr4:129764136 synonymous SNV . 0 22 hm5C_associated_SNPs_107981 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61126 DeepMRMD:0;iRNA_m5C:0 61127 chr1 29649912 29649912 1 + C A rs566780533 29649908 + 29649888 29649928 41 CCTGCAGTACTGGCCAGAGCCAGGCCGGCAGCAATATGGCC CCTGCAGTACTGGCCAGAGCCAGGACGGCAGCAATATGGCC < 41bp 0.351291922761128 0.751920481776793 0.51442254 0.83878326 prediction 0.503840963553587 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29649908 chr1:29649912 synonymous SNV . 0 25 hm5C_associated_SNPs_107982 0 0 0 0 2 Endoplasmic reticulum 0.500229188375256 0.50023157562034 0.64872144 4.77449016922371e-06 hm5C_site_61127 DeepMRMD:0.64872144;iRNA_m5C:4.77449016922371e-06 61128 chr12 132401566 132401566 1 + C G rs11546871 132401565 + 132401545 132401585 41 TTGGGACACAAGCCCCGGACCCGGGCAGCACGGAGAGCCTG TTGGGACACAAGCCCCGGACCGGGGCAGCACGGAGAGCCTG < 41bp 0.431002331824139 0.751913861929042 0.74248564 0.89322984 prediction 0.503827723858085 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132401565 chr12:132401566 nonsynonymous SNV 0.043 0 22 hm5C_associated_SNPs_107983 0 0 1 0 2 Cytosol 0.500231643921095 0.500231643921093 0.3014884 0 hm5C_site_61128 DeepMRMD:0.3014884;iRNA_m5C:0 61129 chr11 123777933 123777933 1 + C A LUSC 123777929 + 123777909 123777949 41 CATGTATCTCAAACCTGCTTCTAGCAGTTCACTCACCCAGG CATGTATCTCAAACCTGCTTCTAGAAGTTCACTCACCCAGG < 41bp 0.367236291197546 0.751912532281908 0.38715443 0.44070098 prediction 0.503825064563816 Functional Gain - OR8D4 ENSG00000181518 CDS Human protein_coding chr11:123777929 chr11:123777933 nonsynonymous SNV 0.081 0 25 hm5C_associated_SNPs_107984 0 0 0 0 0 unknown 0.50023164392069 0.500231643921169 0 9.5767838104166e-13 hm5C_site_61129 DeepMRMD:0;iRNA_m5C:9.5767838104166e-13 61130 chr5 145643075 145643075 1 + T G GBM 145643073 + 145643053 145643093 41 GATGATGAGCAAACCACAGACATCAGGTGCATATGTTCTTA GATGATGAGCAAACCACAGACAGCAGGTGCATATGTTCTTA < 41bp 0.433750201303336 0.751905466230622 0.22257295 0.37491876 prediction 0.503810932461243 Functional Gain - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145643073 chr5:145643075 nonsynonymous SNV 0.980 0 23 hm5C_associated_SNPs_107985 0 0 1 0 1 Nucleus 0.500231643921206 0.500231644174836 0 5.07259123594395e-10 hm5C_site_61130 DeepMRMD:0;iRNA_m5C:5.07259123594395e-10 61131 chr7 6617247 6617247 1 + C G rs11559147 6617246 + 6617226 6617266 41 CCGTCCCACCCCCACCTCGCCCGAGTCCGGGGCGGCCCCGG CCGTCCCACCCCCACCTCGCCGGAGTCCGGGGCGGCCCCGG < 41bp 0.545515065903221 0.79741872691268 0.17098242 0.9303057 prediction 0.503807322018918 Functional Gain - ZDHHC4 ENSG00000136247 UTR5 Human protein_coding chr7:6617246 chr7:6617247 . . 0 22 hm5C_associated_SNPs_107986 0 0 1 0 1 Cytosol 0.500231643957022 0.500231643923963 0.8606114 0 hm5C_site_61131 DeepMRMD:0.8606114;iRNA_m5C:0 61132 chr19 52206224 52206224 1 + C G UCEC 52206223 + 52206203 52206243 41 TCTCAAATGGGCCAAGGGCCCCGGGCTTGGAAGGGCAGGTG TCTCAAATGGGCCAAGGGCCCGGGGCTTGGAAGGGCAGGTG < 41bp 0.58711586752804 0.839018508407977 0.49457476 0.8886139 prediction 0.503805281759873 Functional Gain - SPACA6 ENSG00000182310 ncRNA_exonic Human protein_coding chr19:52206223 chr19:52206224 . . 0 22 hm5C_associated_SNPs_107987 0 0 1 0 0 chromatin 0.500231643921091 0.500231643921086 0.7772278 0 hm5C_site_61132 DeepMRMD:0.7772278;iRNA_m5C:0 61133 chr15 65945014 65945014 1 + T C COAD 65945012 + 65944992 65945032 41 ATAGGGATTTCTGAAGAGATCATGGGCCTGACAATCCTTGC ATAGGGATTTCTGAAGAGATCACGGGCCTGACAATCCTTGC < 41bp 0.4937570452801 0.75189665507703 0.21708637 0.34485066 prediction 0.503793310154059 Functional Gain - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65945012 chr15:65945014 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_107988 0 0 0 1 1 Endoplasmic reticulum 0.500231643297379 0.500231641790502 0 0 hm5C_site_61133 DeepMRMD:0;iRNA_m5C:0 61134 chr5 34956113 34956113 1 + C G rs553237802 34956112 + 34956092 34956132 41 AGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCT AGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCT < 41bp 0.575529610008497 0.82742507159116 0.36571372 0.84725165 prediction 0.503790923165327 Functional Gain - DNAJC21 ENSG00000168724 UTR3 Human protein_coding chr5:34956112 chr5:34956113 . . 0 22 hm5C_associated_SNPs_107989 0 0 0 0 0 Cytosol 0.500231653595756 0.500253992862468 0.6945033 4.46785334240474e-05 hm5C_site_61134 DeepMRMD:0.6945033;iRNA_m5C:4.46785334240474e-05 61135 chr5 156746874 156746874 1 + C A UCEC 156746873 + 156746853 156746893 41 CGCGGCATTGCAGGACTTCGCCCAGGTGACGCTGCGTGAGC CGCGGCATTGCAGGACTTCGCACAGGTGACGCTGCGTGAGC < 41bp 0.496540215593287 0.751895163861254 0.13692757 0.5062205 prediction 0.503790327722508 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156746873 chr5:156746874 synonymous SNV . 0 22 hm5C_associated_SNPs_107990 0 0 1 0 1 Cytosol 0.500231644520405 0.500234152527914 0.0124409999999999 5.01601501801119e-06 hm5C_site_61135 DeepMRMD:0.0124409999999999;iRNA_m5C:5.01601501801119e-06 61136 chr17 16318972 16318972 1 + C G rs77272400 16318971 + 16318951 16318991 41 GCCAGGTGGGCTGAGGGTGACCGAGAGACCAGAACCTGCTT GCCAGGTGGGCTGAGGGTGACGGAGAGACCAGAACCTGCTT < 41bp 0.461688123376984 0.751889268332002 0.42551413 0.88115764 prediction 0.503778536664003 Functional Gain - TRPV2 ENSG00000264739 ncRNA_exonic Human antisense chr17:16318971 chr17:16318972 . . 0 22 hm5C_associated_SNPs_107991 0 0 1 0 0 Endoplasmic reticulum 0.500232135495132 0.50023164391489 0.76231528 0 hm5C_site_61136 DeepMRMD:0.76231528;iRNA_m5C:0 61137 chr5 140080460 140080460 1 + C G rs145640336 140080459 + 140080439 140080479 41 AGATGAATATGAGAAACTCGCCGAGAAGAGGCTCACGGAAG AGATGAATATGAGAAACTCGCGGAGAAGAGGCTCACGGAAG < 41bp 0.580151252635674 0.8320257528295 0.4750633 0.90319014 prediction 0.503749000387652 Functional Gain - ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140080459 chr5:140080460 synonymous SNV . 0 22 hm5C_associated_SNPs_107992 0 0 1 0 2 Ribosome 0.500231643921092 0.50023164392106 0.80638028 0 hm5C_site_61137 DeepMRMD:0.80638028;iRNA_m5C:0 61138 chr17 66042012 66042012 1 + T C UCEC 66042010 + 66041990 66042030 41 GTGTATAAGGCTTCGTTAAGCTTAATTGAGAAGTATTTCTC GTGTATAAGGCTTCGTTAAGCTCAATTGAGAAGTATTTCTC < 41bp 0.469022910011941 0.751858297621103 0.045048147 0.07068542 prediction 0.503716595242205 Functional Gain - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66042010 chr17:66042012 nonsynonymous SNV 0.996 3 23 hm5C_associated_SNPs_107993 0 0 1 0 1 Cytosol 0.500231644422851 0.500231631467664 0 0 hm5C_site_61138 DeepMRMD:0;iRNA_m5C:0 61139 chr2 27745432 27745432 1 + C G LUAD 27745428 + 27745408 27745448 41 ATTCGGGCTGCTCCCATCTCCTGCCATGTCCAGGTTGCACA ATTCGGGCTGCTCCCATCTCCTGCGATGTCCAGGTTGCACA < 41bp 0.460872523925143 0.751857701802287 0.067302555 0.18721256 prediction 0.503715403604573 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27745428 chr2:27745432 nonsynonymous SNV 0.794 4 25 hm5C_associated_SNPs_107994 0 0 1 0 1 cytosol 0.500236129487753 0.500231687304044 0 0 hm5C_site_61139 DeepMRMD:0;iRNA_m5C:0 61140 chr14 100405567 100405567 1 + T C UCEC 100405565 + 100405545 100405585 41 GAAGGCTCGGACGGAACCGACATCAATGCCGTCTGTCGGGC GAAGGCTCGGACGGAACCGACACCAATGCCGTCTGTCGGGC < 41bp 0.455183085925841 0.751857423378754 0.31948593 0.30689728 prediction 0.503714846757508 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100405565 chr14:100405567 nonsynonymous SNV 0.955 2 23 hm5C_associated_SNPs_107995 0 0 0 0 1 Nucleus 0.500231643921044 0.500231643916317 0 0 hm5C_site_61140 DeepMRMD:0;iRNA_m5C:0 61141 chr19 36142225 36142225 1 + C G GBM 36142221 + 36142201 36142241 41 GCCGCTTCCCCAACCAGAACCAGACTAGAAACTGCTGGCAG GCCGCTTCCCCAACCAGAACCAGAGTAGAAACTGCTGGCAG < 41bp 0.522355359330157 0.774208666051741 0.31031856 0.90038 prediction 0.503706613443169 Functional Gain - COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142221 chr19:36142225 nonsynonymous SNV 0.914 5 25 hm5C_associated_SNPs_107996 0 0 1 0 2 Ribosome 0.500231643924511 0.500231643921816 0.80076 0 hm5C_site_61141 DeepMRMD:0.80076;iRNA_m5C:0 61142 chr10 134219126 134219126 1 + C G rs374025458 134219122 + 134219102 134219142 41 GGCGCCCTGTGCGGACGGCCCTGCCGGTGGGCTGGCGGACT GGCGCCCTGTGCGGACGGCCCTGCGGGTGGGCTGGCGGACT < 41bp 0.561305159282718 0.813158172988641 0.47886384 0.86611676 prediction 0.503706027411846 Functional Gain - PWWP2B ENSG00000171813 CDS Human protein_coding chr10:134219122 chr10:134219126 synonymous SNV . 0 25 hm5C_associated_SNPs_107997 0 0 1 0 0 chromatin 0.500231643913556 0.500233497710346 0.73223352 3.70759358037098e-06 hm5C_site_61142 DeepMRMD:0.73223352;iRNA_m5C:3.70759358037098e-06 61143 chr19 36357372 36357372 1 + C A COAD 36357371 + 36357351 36357391 41 CCTTCCCCACACCTAGCCACCCGCGTCTCCAGACTCACGTG CCTTCCCCACACCTAGCCACCAGCGTCTCCAGACTCACGTG < 41bp 0.494272025454623 0.751850102391063 0.020676196 0.04885456 prediction 0.503700204782125 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357371 chr19:36357372 nonsynonymous SNV 0.519 0 22 hm5C_associated_SNPs_107998 0 0 0 0 1 exosome 0.500231643774262 0.50023779807521 0 1.23086018954943e-05 hm5C_site_61143 DeepMRMD:0;iRNA_m5C:1.23086018954943e-05 61144 chr17 7385742 7385742 1 + C G LUSC 7385738 + 7385718 7385758 41 ACCGTCTGCTCCGCCGTCCTCACCCTCTGCCTTGAGAGCCA ACCGTCTGCTCCGCCGTCCTCACCGTCTGCCTTGAGAGCCA < 41bp 0.576422545706527 0.828270779700311 0.010368377 0.05349937 prediction 0.503696467987567 Functional Gain - SLC35G6 ENSG00000259224 CDS Human protein_coding chr17:7385738 chr17:7385742 nonsynonymous SNV 0.866 1 25 hm5C_associated_SNPs_107999 0 0 0 0 0 exosome 0.500231643921092 0.50023164034796 0 0 hm5C_site_61144 DeepMRMD:0;iRNA_m5C:0 61145 chr22 32215150 32215150 1 + C A LUSC 32215146 + 32215126 32215166 41 AGCACTGATTAACCCCTTCGCTCCCTCTCGGATGCCCATGA AGCACTGATTAACCCCTTCGCTCCATCTCGGATGCCCATGA < 41bp 0.333221828917262 0.751839578890676 0.043803513 0.79839915 prediction 0.503679157781351 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32215146 chr22:32215150 synonymous SNV . 0 25 hm5C_associated_SNPs_108000 0 0 0 0 1 chromatin 0.500231643921092 0.500231643921091 0.5967983 0 hm5C_site_61145 DeepMRMD:0.5967983;iRNA_m5C:0 61146 chr7 48092405 48092405 1 + C T COAD 48092404 + 48092384 48092424 41 AGCTGACTCAGACAAGAGGACCCCGAAGACCTCCAGGGCAT AGCTGACTCAGACAAGAGGACTCCGAAGACCTCCAGGGCAT < 41bp 0.510978628315892 0.762816188486052 0.011287391 0.029952407 prediction 0.503675120340318 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48092404 chr7:48092405 synonymous SNV . 0 22 hm5C_associated_SNPs_108001 0 0 0 0 1 exosome 0.500231643919644 0.500231645688487 0 3.53768614402838e-09 hm5C_site_61146 DeepMRMD:0;iRNA_m5C:3.53768614402838e-09 61147 chr17 57684530 57684530 1 + C G LUAD 57684526 + 57684506 57684546 41 CAGTGACACACGAAAGGAAACAGGCTAAGGTGGTGAACCCT CAGTGACACACGAAAGGAAACAGGGTAAGGTGGTGAACCCT < 41bp 0.559101615020398 0.810935105186649 0.28495413 0.8594067 prediction 0.503666980332502 Functional Gain - DHX40 ENSG00000108406 CDS Human protein_coding chr17:57684526 chr17:57684530 synonymous SNV . 0 25 hm5C_associated_SNPs_108002 0 0 1 0 0 Ribosome 0.500231643921329 0.500231643921092 0.7188134 0 hm5C_site_61147 DeepMRMD:0.7188134;iRNA_m5C:0 61148 chr5 121787029 121787029 1 + C A LUSC 121787025 + 121787005 121787045 41 TGTGGTGCAGATGGAGCAGCCTAGCCTTGAACTGAATGGAG TGTGGTGCAGATGGAGCAGCCTAGACTTGAACTGAATGGAG < 41bp 0.354871751002792 0.75183318331425 0.35446328 0.36738384 prediction 0.5036663666285 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121787025 chr5:121787029 nonsynonymous SNV 0.280 0 25 hm5C_associated_SNPs_108003 0 0 0 1 0 exosome 0.500232359162005 0.500231650461872 0 0 hm5C_site_61148 DeepMRMD:0;iRNA_m5C:0 61149 chr19 54656240 54656240 1 + C T SKCM 54656239 + 54656219 54656259 41 AGCTGTCAGAGGTGAACATACCGCTGTCGCTGGGTGTCTGT AGCTGTCAGAGGTGAACATACTGCTGTCGCTGGGTGTCTGT < 41bp 0.504584284516064 0.756412026321834 0.35805008 0.32210267 prediction 0.50365548361154 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656239 chr19:54656240 nonsynonymous SNV 0.969 4 22 hm5C_associated_SNPs_108004 0 0 1 0 1 Ribosome 0.500249013235822 0.500316512477756 0 0.000134998483867443 hm5C_site_61149 DeepMRMD:0;iRNA_m5C:0.000134998483867443 61150 chr2 74757613 74757613 1 + C G rs2231248 74757609 + 74757589 74757629 41 TGTGGTGGAGAAGACAGCACCTGCCGTGGTCTATATCGAGA TGTGGTGGAGAAGACAGCACCTGCGGTGGTCTATATCGAGA < 41bp 0.476360069961324 0.751823489779991 0.09313175 0.22066742 prediction 0.503646979559982 Functional Gain - HTRA2 ENSG00000115317 CDS Human protein_coding chr2:74757609 chr2:74757613 synonymous SNV . 0 25 hm5C_associated_SNPs_108005 1 0 0 0 1 exosome 0.500231634160553 0.500231643915237 0 1.95093676769176e-08 hm5C_site_61150 DeepMRMD:0;iRNA_m5C:1.95093676769176e-08 Parkinson Disease, Dominant Parkinson Disease, Dominant 61151 chr19 55333193 55333193 1 + C A rs201694260 55333192 + 55333172 55333212 41 CGCAAGGTCAACAGAACATTCCAGGCAGATTTCCCTCTGGG CGCAAGGTCAACAGAACATTCAAGGCAGATTTCCCTCTGGG < 41bp 0.493969848709542 0.751821365576833 0.8201864 0.90963143 prediction 0.503642731153666 Functional Gain - KIR3DL1 ENSG00000167633 CDS Human protein_coding chr19:55333192 chr19:55333193 nonsynonymous SNV 0.035 1 22 hm5C_associated_SNPs_108006 0 0 0 0 0 exosome 0.500231643921102 0.500231643921095 0.17889006 0 hm5C_site_61151 DeepMRMD:0.17889006;iRNA_m5C:0 61152 chr6 106960432 106960432 1 + C A rs146137130 106960431 + 106960411 106960451 41 CCTCGACGGGGGCGTTGCCTCCGCTGCGAGCCCAGAGTCCA CCTCGACGGGGGCGTTGCCTCAGCTGCGAGCCCAGAGTCCA < 41bp 0.497294897731347 0.751820962197726 0.18322834 0.3274366 prediction 0.503641924395453 Functional Gain - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:106960431 chr6:106960432 synonymous SNV . 0 22 hm5C_associated_SNPs_108007 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0 0 hm5C_site_61152 DeepMRMD:0;iRNA_m5C:0 61153 chr4 38701177 38701177 1 + C G rs142698924 38701176 + 38701156 38701196 41 GATCTGGGATCAGCTTTGAGCCTGAGTTCAGTGAATAGCCT GATCTGGGATCAGCTTTGAGCGTGAGTTCAGTGAATAGCCT < 41bp 0.478102409362365 0.751815774779324 0.12264833 0.32271063 prediction 0.503631549558649 Functional Gain - KLF3 ENSG00000109787 UTR3 Human protein_coding chr4:38701176 chr4:38701177 . . 0 22 hm5C_associated_SNPs_108008 0 0 1 0 0 Cytosol 0.500231643921093 0.500231643921092 0 0 hm5C_site_61153 DeepMRMD:0;iRNA_m5C:0 61154 chr8 55060069 55060069 1 + C G LUAD 55060068 + 55060048 55060088 41 TGGGTACCTGGCGGATCCTGCCAAATTTCCTGAAGCACGAC TGGGTACCTGGCGGATCCTGCGAAATTTCCTGAAGCACGAC < 41bp 0.439382911783103 0.751813059011821 0.22859633 0.2559948 prediction 0.503626118023643 Functional Gain - MRPL15 ENSG00000137547 CDS Human protein_coding chr8:55060068 chr8:55060069 synonymous SNV . 0 22 hm5C_associated_SNPs_108009 0 0 1 0 0 Cytosol 0.5002316440127 0.50023164480813 0 1.59085900008904e-09 hm5C_site_61154 DeepMRMD:0;iRNA_m5C:1.59085900008904e-09 61155 chr12 9720951 9720951 1 + C G rs758090428 9720947 + 9720927 9720967 41 CGTGGGAGAGGAGGATATGACACGCGATATCGCAGGGAGTA CGTGGGAGAGGAGGATATGACACGGGATATCGCAGGGAGTA < 41bp 0.478259214215168 0.751806048180325 0.19598743 0.4667957 prediction 0.50361209636065 Functional Gain - DDX12P;KLRB1 ENSG00000214776 ncRNA_exonic Human protein_coding chr12:9720947 chr12:9720951 . . 0 25 hm5C_associated_SNPs_108010 0 0 0 0 0 unknown 0.50023163047495 0.500231643920816 0 2.68917319523609e-08 hm5C_site_61155 DeepMRMD:0;iRNA_m5C:2.68917319523609e-08 61156 chr10 13213187 13213187 1 + C T CESC 13213186 + 13213166 13213206 41 AACAGATGAAGAAGAAGTTCCCGCATCACAGTCAACTGAAA AACAGATGAAGAAGAAGTTCCTGCATCACAGTCAACTGAAA < 41bp 0.508429112261955 0.76023470480356 0.12785 0.2525488 prediction 0.50361118508321 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13213186 chr10:13213187 synonymous SNV . 0 22 hm5C_associated_SNPs_108011 0 0 1 0 1 Nucleus 0.500231619164302 0.500231643843669 0 4.93587333227907e-08 hm5C_site_61156 DeepMRMD:0;iRNA_m5C:4.93587333227907e-08 61157 chr20 61734057 61734057 1 + C G rs576701364 61734056 + 61734036 61734076 41 GGCAGAGTCCGCGTTTCTAACCAGCCCCCGGGTGGGCGGTG GGCAGAGTCCGCGTTTCTAACGAGCCCCCGGGTGGGCGGTG < 41bp 0.466727541000188 0.751803039662153 0.28145903 0.8837789 prediction 0.503606079324306 Functional Gain - HAR1A ENSG00000225978 ncRNA_exonic Human lincRNA chr20:61734056 chr20:61734057 . . 0 22 hm5C_associated_SNPs_108012 0 0 0 0 0 unknown 0.500231643921091 0.500231643921092 0.7675578 3.10862446895044e-15 hm5C_site_61157 DeepMRMD:0.7675578;iRNA_m5C:3.10862446895044e-15 61158 chr14 20216056 20216056 1 + C G CESC 20216052 + 20216032 20216072 41 GCTGGTGTGGGGGTTTTATCCACTCTATCATGCAGGTCATA GCTGGTGTGGGGGTTTTATCCACTGTATCATGCAGGTCATA < 41bp 0.558340962114739 0.810140211914829 0.87800443 0.19413024 prediction 0.503598499600179 Functional Gain - OR4Q3 ENSG00000182652 CDS Human protein_coding chr14:20216052 chr14:20216056 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_108013 0 0 0 0 0 unknown 0.500231625706566 0.500231643794747 0 3.61763621281597e-08 hm5C_site_61158 DeepMRMD:0;iRNA_m5C:3.61763621281597e-08 61159 chr11 55322871 55322871 1 + T A LUAD 55322867 + 55322847 55322887 41 GAACAGACTGATGGTGGTTTCTGATGAGAAAGAAAATATTA GAACAGACTGATGGTGGTTTCTGAAGAGAAAGAAAATATTA < 41bp 0.569146545666142 0.820945022078405 0.07484141 0.08721006 prediction 0.503596952824527 Functional Gain - OR4C15 ENSG00000181939 CDS Human protein_coding chr11:55322867 chr11:55322871 nonsynonymous SNV 0.004 0 25 hm5C_associated_SNPs_108014 0 0 0 0 0 unknown 0.500231643921085 0.500231643920286 0 0 hm5C_site_61159 DeepMRMD:0;iRNA_m5C:0 61160 chr2 97217262 97217262 1 + C G BLCA 97217261 + 97217241 97217281 41 AGAGAGGAGGCGCAGGCAGGCCCCTGCCCGGCAGCCCCCAT AGAGAGGAGGCGCAGGCAGGCGCCTGCCCGGCAGCCCCCAT < 41bp 0.442421554208994 0.751795190430206 0.48269638 0.46466273 prediction 0.503590380860411 Functional Gain - ARID5A ENSG00000196843 CDS Human protein_coding chr2:97217261 chr2:97217262 nonsynonymous SNV 0.022 0 22 hm5C_associated_SNPs_108015 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0 0 hm5C_site_61160 DeepMRMD:0;iRNA_m5C:0 61161 chr12 9086993 9086993 1 + C T SKCM 9086992 + 9086972 9087012 41 ACAAATGGGTGACTCAAAACCCCCACAGGCCATCGTGAAGC ACAAATGGGTGACTCAAAACCTCCACAGGCCATCGTGAAGC < 41bp 0.568401014690099 0.820190611713612 0.019108951 0.95714897 prediction 0.503579194047026 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9086992 chr12:9086993 synonymous SNV . 0 22 hm5C_associated_SNPs_108016 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231644075631 0.91429794 3.09077874405261e-10 hm5C_site_61161 DeepMRMD:0.91429794;iRNA_m5C:3.09077874405261e-10 61162 chr10 14880174 14880174 1 + T G rs569870289 14880171 + 14880151 14880191 41 GGTTGCGCGTGCGCACTGTGCAGTTTCCGCGGAGCGCAGAG GGTTGCGCGTGCGCACTGTGCAGGTTCCGCGGAGCGCAGAG < 41bp 0.388361747996539 0.751782932385504 0.40864617 0.86400306 prediction 0.503565864771009 Functional Gain - HSPA14 ENSG00000187522 UTR5 Human protein_coding chr10:14880171 chr10:14880174 . . 0 24 hm5C_associated_SNPs_108017 0 0 0 0 0 Cytosol 0.500231645204818 0.50023165171867 0.72800612 1.30277040266691e-08 hm5C_site_61162 DeepMRMD:0.72800612;iRNA_m5C:1.30277040266691e-08 61163 chr8 118184886 118184886 1 + C T rs139999213 118184885 + 118184865 118184905 41 AATCTCCAGTTGACCAGGACCCCGACTGCCTTTTCTGTGAA AATCTCCAGTTGACCAGGACCTCGACTGCCTTTTCTGTGAA < 41bp 0.499534023333343 0.751781174302369 0.14455318 0.68010765 prediction 0.503562348604738 Functional Gain - SLC30A8 ENSG00000164756 CDS Human protein_coding chr8:118184885 chr8:118184886 nonsynonymous SNV 0.698 1 22 hm5C_associated_SNPs_108018 0 0 0 0 0 membrane 0.500236913261451 0.500440726062324 0.3602153 0.000407625601746675 hm5C_site_61163 DeepMRMD:0.3602153;iRNA_m5C:0.000407625601746675 61164 chr6 27222836 27222836 1 + C T LGG 27222835 + 27222815 27222855 41 TCAGAATCAACTCTTCTTATCCGCACTGGCTCCCACTGCTT TCAGAATCAACTCTTCTTATCTGCACTGGCTCCCACTGCTT < 41bp 0.514769699813892 0.766548956018657 0.42613184 0.2925558 prediction 0.50355851240953 Functional Gain - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27222835 chr6:27222836 nonsynonymous SNV 0.063 2 22 hm5C_associated_SNPs_108019 0 0 1 0 2 Cytosol 0.500231643921086 0.500231643912714 0 0 hm5C_site_61164 DeepMRMD:0;iRNA_m5C:0 61165 chr19 41633919 41633919 1 + C A THCA 41633915 + 41633895 41633935 41 CTGGGTGCGCCCGAGGACATCGACCTGACCCCACTCAGCTC CTGGGTGCGCCCGAGGACATCGACATGACCCCACTCAGCTC < 41bp 0.660658666899883 0.912436726946377 0.105145544 0.09693557 prediction 0.503556120092988 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41633915 chr19:41633919 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_108020 0 0 0 0 0 exosome 0.500231640225619 0.500231640980581 0 1.50992485181689e-09 hm5C_site_61165 DeepMRMD:0;iRNA_m5C:1.50992485181689e-09 61166 chr5 14664833 14664833 1 + C G rs181297196 14664832 + 14664812 14664852 41 GCTCTGCGGGCCCTCGGAAACCGCCCCGGCGGCTGAGAGGC GCTCTGCGGGCCCTCGGAAACGGCCCCGGCGGCTGAGAGGC < 41bp 0.556965565963227 0.808725601266611 0.2628194 0.4740793 prediction 0.50352007060677 Functional Gain - OTULIN ENSG00000154124 UTR5 Human protein_coding chr5:14664832 chr5:14664833 . . 0 22 hm5C_associated_SNPs_108021 0 0 1 0 0 Ribosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_61166 DeepMRMD:0;iRNA_m5C:0 61167 chr11 55135423 55135423 1 + C G HNSC 55135422 + 55135402 55135442 41 TTTGTTTGTAGGCTCCGACACCTGAGTCCAACACCTTCAGA TTTGTTTGTAGGCTCCGACACGTGAGTCCAACACCTTCAGA < 41bp 0.467670434651876 0.751743125980425 0.1342018 0.32370663 prediction 0.50348625196085 Functional Gain - OR4A15 ENSG00000181958 CDS Human protein_coding chr11:55135422 chr11:55135423 nonsynonymous SNV 0.008 0 22 hm5C_associated_SNPs_108022 0 0 0 0 0 unknown 0.500231643921094 0.500231643921092 0 0 hm5C_site_61167 DeepMRMD:0;iRNA_m5C:0 61168 chr12 53670563 53670563 1 + C A rs61760168 53670562 + 53670542 53670582 41 GAGCCCCGAGGAGACACCAGCCGGGGCCTGGGCACGAGCCA GAGCCCCGAGGAGACACCAGCAGGGGCCTGGGCACGAGCCA < 41bp 0.526658033438451 0.778399276756968 0.9245558 0.9377581 prediction 0.503482486637034 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53670562 chr12:53670563 synonymous SNV . 0 22 hm5C_associated_SNPs_108023 0 0 1 0 1 Nucleus 0.500231643921092 0.500231643921092 0.0264046 0 hm5C_site_61168 DeepMRMD:0.0264046;iRNA_m5C:0 61169 chr8 99440431 99440431 1 + C A LUAD 99440430 + 99440410 99440450 41 AGTTCTACTTCGACCGCAACCCTGAGCTCTTCCCCTACGTG AGTTCTACTTCGACCGCAACCATGAGCTCTTCCCCTACGTG < 41bp 0.497833431242549 0.751738263945872 0.14081496 0.27725416 prediction 0.503476527891743 Functional Gain - KCNS2 ENSG00000156486 CDS Human protein_coding chr8:99440430 chr8:99440431 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_108024 0 0 0 0 0 exosome 0.500231660390132 0.500231633369584 0 0 hm5C_site_61169 DeepMRMD:0;iRNA_m5C:0 61170 chr17 68129132 68129132 1 + C A SKCM 68129131 + 68129111 68129151 41 TCTAGAAGCTCCTATGTTCCCCGAGAAATTCTCTGGGGCCA TCTAGAAGCTCCTATGTTCCCAGAGAAATTCTCTGGGGCCA < 41bp 0.511884534631551 0.763618895677461 0.42338988 0.867503 prediction 0.50346872209182 Functional Gain - KCNJ16 ENSG00000153822 CDS Human protein_coding chr17:68129131 chr17:68129132 synonymous SNV . 0 22 hm5C_associated_SNPs_108025 0 0 1 0 0 chromatin 0.500231643921092 0.500231643920621 0.735006 0 hm5C_site_61170 DeepMRMD:0.735006;iRNA_m5C:0 61171 chr1 12837422 12837422 1 + C G rs559723328 12837418 + 12837398 12837438 41 CCTGCCCTGAGCCGCTGCTCCCAGCTCAGCACCTTCAGCTT CCTGCCCTGAGCCGCTGCTCCCAGGTCAGCACCTTCAGCTT < 41bp 0.45404056641786 0.751730204397004 0.329679 0.7134221 prediction 0.503460408794008 Functional Gain - PRAMEF12 ENSG00000116726 CDS Human protein_coding chr1:12837418 chr1:12837422 nonsynonymous SNV 0.008 4 25 hm5C_associated_SNPs_108026 0 0 0 0 0 unknown 0.500231643878175 0.500231643920061 0.4268442 8.37721003676961e-11 hm5C_site_61171 DeepMRMD:0.4268442;iRNA_m5C:8.37721003676961e-11 61172 chr1 203472112 203472112 1 + T C rs79523790 203472110 + 203472090 203472130 41 TCTATCCCGGGGCCTTTGCCCCTGAGCCTGCGCTCTGTACA TCTATCCCGGGGCCTTTGCCCCCGAGCCTGCGCTCTGTACA < 41bp 0.479190280860318 0.75172388388676 0.2619394 0.28667638 prediction 0.503447767773521 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472110 chr1:203472112 nonsynonymous SNV 0.860 0 23 hm5C_associated_SNPs_108027 0 0 0 0 2 unknown 0.500231643920202 0.500231643921092 0 1.78013159768398e-12 hm5C_site_61172 DeepMRMD:0;iRNA_m5C:1.78013159768398e-12 61173 chrX 37028325 37028325 1 + C G SKCM 37028321 + 37028301 37028341 41 CTGCCCGGAGCCTCCAGAGACTCGCGTATCTCATCTCCGCC CTGCCCGGAGCCTCCAGAGACTCGGGTATCTCATCTCCGCC < 41bp 0.582767419998718 0.834490241081471 0.50993675 0.9010803 prediction 0.503445642165506 Functional Gain - FAM47C ENSG00000198173 CDS Human protein_coding chrX:37028321 chrX:37028325 synonymous SNV . 0 25 hm5C_associated_SNPs_108028 0 0 0 0 0 unknown 0.500231514218987 0.500231643917682 0.7822871 2.59397388902016e-07 hm5C_site_61173 DeepMRMD:0.7822871;iRNA_m5C:2.59397388902016e-07 61174 chr17 21201777 21201777 1 + C G LUAD 21201776 + 21201756 21201796 41 ATCCTGCATGTCCAAGCCACCCGCACCCAACCCCACGTGAG ATCCTGCATGTCCAAGCCACCGGCACCCAACCCCACGTGAG < 41bp 0.4341617694351 0.751715949488045 0.04475087 0.16740647 prediction 0.50343189897609 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21201776 chr17:21201777 synonymous SNV . 0 22 hm5C_associated_SNPs_108029 0 0 0 0 2 Ribosome 0.500231586282561 0.500231644034922 0 1.15504722453252e-07 hm5C_site_61174 DeepMRMD:0;iRNA_m5C:1.15504722453252e-07 61175 chr6 35196408 35196408 1 + C A HNSC 35196404 + 35196384 35196424 41 CCCACAGACGTGGATGAGTGCGAGCGAGAGGATAATGCAGG CCCACAGACGTGGATGAGTGCGAGAGAGAGGATAATGCAGG < 41bp 0.352066541432203 0.751713712282612 0.6361033 0.856074 prediction 0.503427424565224 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35196404 chr6:35196408 synonymous SNV . 0 25 hm5C_associated_SNPs_108030 0 0 0 0 1 Nucleus 0.500231513140543 0.500231630719773 0.4399414 2.35158459371831e-07 hm5C_site_61175 DeepMRMD:0.4399414;iRNA_m5C:2.35158459371831e-07 61176 chr1 32050549 32050549 1 + C T SKCM 32050548 + 32050528 32050568 41 ATGACGCCTGTCCTGTCGCCCCAGAACCTGCTGTCTTGTGA ATGACGCCTGTCCTGTCGCCCTAGAACCTGCTGTCTTGTGA < 41bp 0.516391869765254 0.768101634202176 0.43958142 0.27063623 prediction 0.503419528873846 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32050548 chr1:32050549 stopgain 0.927 1 22 hm5C_associated_SNPs_108031 0 0 0 0 1 Ribosome 0.500227555219782 0.500231243303281 0 7.37616699608701e-06 hm5C_site_61176 DeepMRMD:0;iRNA_m5C:7.37616699608701e-06 61177 chr6 4892381 4892381 1 + C T rs734783 4892380 + 4892360 4892400 41 AAGCCCCGTTAAGAGCAGGACCGCAGTGGACGGCTTTCAGA AAGCCCCGTTAAGAGCAGGACTGCAGTGGACGGCTTTCAGA < 41bp 0.49732944744843 0.751709539587114 0.38343826 0.74641776 prediction 0.503419079174228 Functional Gain - CDYL ENSG00000153046 CDS Human protein_coding chr6:4892380 chr6:4892381 synonymous SNV . 0 22 hm5C_associated_SNPs_108032 0 0 1 0 0 Cytoplasm 0.500231643922085 0.500231643922769 0.49283552 1.36690658791849e-12 hm5C_site_61177 DeepMRMD:0.49283552;iRNA_m5C:1.36690658791849e-12 61178 chr3 196381500 196381500 1 + C T SKCM 196381499 + 196381479 196381519 41 CGGAACAGCCACAGCAGCCTCCCAAGGAGTCTGCAAGTTGG CGGAACAGCCACAGCAGCCTCTCAAGGAGTCTGCAAGTTGG < 41bp 0.504456464583402 0.756164710249246 0.05754733 0.16319075 prediction 0.503416491331688 Functional Gain - NRROS ENSG00000174004 CDS Human protein_coding chr3:196381499 chr3:196381500 synonymous SNV . 0 22 hm5C_associated_SNPs_108033 0 0 0 0 1 chromatin 0.500231643921089 0.500231644921176 0 2.00017336027258e-09 hm5C_site_61178 DeepMRMD:0;iRNA_m5C:2.00017336027258e-09 61179 chrY 6958154 6958154 1 + C A HNSC 6958150 + 6958130 6958170 41 AGTGGAAGTCTCGTCCACAGCTACCAAGGCACTGGCGGTAT AGTGGAAGTCTCGTCCACAGCTACAAAGGCACTGGCGGTAT < 41bp 0.327253407759198 0.751707973141048 0.22350618 0.6474728 prediction 0.503415946282095 Functional Gain - TBL1Y ENSG00000092377 CDS Human protein_coding chrY:6958150 chrY:6958154 nonsynonymous SNV 0.434 0 25 hm5C_associated_SNPs_108034 0 0 0 0 1 membrane 0.500231643921092 0.500231643921091 0.2949456 0 hm5C_site_61179 DeepMRMD:0.2949456;iRNA_m5C:0 61180 chr2 47278945 47278945 1 + C A UCEC 47278941 + 47278921 47278961 41 TGGAGGAGGCCATGTCAGAGCTGACTATGCCCTCTTCGGTC TGGAGGAGGCCATGTCAGAGCTGAATATGCCCTCTTCGGTC < 41bp 0.340667303547574 0.751706582837047 0.1883282 0.35740492 prediction 0.503413165674093 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47278941 chr2:47278945 nonsynonymous SNV 0.087 3 25 hm5C_associated_SNPs_108035 0 0 0 0 2 Nucleus 0.50023164392105 0.500231643922938 0 3.77609055135508e-12 hm5C_site_61180 DeepMRMD:0;iRNA_m5C:3.77609055135508e-12 61181 chr1 12203872 12203872 1 + C G rs11569956 12203871 + 12203851 12203891 41 CTTACCGCCTGGAGGCAGGCCCGGGAAGGCTGCTGTTTACT CTTACCGCCTGGAGGCAGGCCGGGGAAGGCTGCTGTTTACT < 41bp 0.549020255737352 0.800726823499998 0.8542219 0.88808244 prediction 0.503413135525292 Functional Gain - TNFRSF8 ENSG00000120949 UTR3 Human protein_coding chr1:12203871 chr1:12203872 . . 0 22 hm5C_associated_SNPs_108036 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0.0677210800000001 0 hm5C_site_61181 DeepMRMD:0.0677210800000001;iRNA_m5C:0 61182 chr6 99283761 99283761 1 + T A LUSC 99283757 + 99283737 99283777 41 AAGTGGTTGGAGGAGGCGGACTCGTCCTCGGGCAGCCCCAC AAGTGGTTGGAGGAGGCGGACTCGACCTCGGGCAGCCCCAC < 41bp 0.620062060896267 0.871767290021205 0.33415008 0.56388015 prediction 0.503410458249875 Functional Gain - POU3F2 ENSG00000184486 CDS Human protein_coding chr6:99283757 chr6:99283761 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_108037 0 0 0 0 0 exosome 0.500231643920895 0.500231643606581 0.1277603 0 hm5C_site_61182 DeepMRMD:0.1277603;iRNA_m5C:0 61183 chr11 62550237 62550237 1 + T G rs139505440 62550235 + 62550215 62550255 41 TGCAGAAGATCCTGGCAGATCCTGTGCGGCCGCTCTGCTGC TGCAGAAGATCCTGGCAGATCCGGTGCGGCCGCTCTGCTGC < 41bp 0.396010503729348 0.751704009659723 0.057902485 0.2954212 prediction 0.503408019319447 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550235 chr11:62550237 synonymous SNV . 0 23 hm5C_associated_SNPs_108038 0 0 1 0 2 Ribosome 0.500236462086122 0.500231659095658 0 0 hm5C_site_61183 DeepMRMD:0;iRNA_m5C:0 61184 chr15 76430183 76430183 1 + C A PRAD 76430182 + 76430162 76430202 41 CCTGGCTGCTGTCGATCTCTCCACGGCGGGCTCGCAGCTCC CCTGGCTGCTGTCGATCTCTCAACGGCGGGCTCGCAGCTCC < 41bp 0.519090975398878 0.770783837318249 0.42868313 0.8247285 prediction 0.503385723838741 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76430182 chr15:76430183 synonymous SNV . 0 22 hm5C_associated_SNPs_108039 0 0 0 0 0 Nucleus 0.500231643920991 0.500231643921092 0.649457 2.03836947321179e-13 hm5C_site_61184 DeepMRMD:0.649457;iRNA_m5C:2.03836947321179e-13 61185 chr15 40564552 40564552 1 + C T KIRC 40564551 + 40564531 40564571 41 CCACTTCGGATACCAGCAGCCCCCAGAAGTCCCTCCGCACA CCACTTCGGATACCAGCAGCCTCCAGAAGTCCCTCCGCACA < 41bp 0.557271570449928 0.808943716456042 0.15058678 0.94292414 prediction 0.503344292012228 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40564551 chr15:40564552 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_108040 0 0 0 0 0 unknown 0.500231643920278 0.500231629672918 0.88584828 0 hm5C_site_61185 DeepMRMD:0.88584828;iRNA_m5C:0 61186 chr14 100847882 100847882 1 + C T SKCM 100847881 + 100847861 100847901 41 GGGGCCCCCTGCAGGGCGTGCCCCAGCCCCTCTCTACGTGG GGGGCCCCCTGCAGGGCGTGCTCCAGCCCCTCTCTACGTGG < 41bp 0.506939841659132 0.758604355747679 0.112876385 0.77321744 prediction 0.503329028177095 Functional Gain - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100847881 chr14:100847882 synonymous SNV . 0 22 hm5C_associated_SNPs_108041 0 0 0 0 0 chromatin 0.500231643921118 0.500231643921092 0.54643488 0 hm5C_site_61186 DeepMRMD:0.54643488;iRNA_m5C:0 61187 chr1 248343551 248343551 1 + C A LUSC 248343547 + 248343527 248343567 41 GATGGCCTTCAACTACCTGTCTGGCAGCAAGTCCATTTCTA GATGGCCTTCAACTACCTGTCTGGAAGCAAGTCCATTTCTA < 41bp 0.656097007222883 0.907753561690923 0.06471917 0.119719386 prediction 0.50331310893608 Functional Gain - OR2M2 ENSG00000198601 CDS Human protein_coding chr1:248343547 chr1:248343551 synonymous SNV . 0 25 hm5C_associated_SNPs_108042 0 0 0 0 0 exosome 0.500233039180347 0.500231518234292 0 0 hm5C_site_61187 DeepMRMD:0;iRNA_m5C:0 61188 chr7 89841032 89841032 1 + C G rs536298306 89841028 + 89841008 89841048 41 CGAGCTCCCCGACTCCTCCCCGCGCTCCACGGCTCTTCCCG CGAGCTCCCCGACTCCTCCCCGCGGTCCACGGCTCTTCCCG < 41bp 0.554243714453921 0.805896014734593 0.14243966 0.4891293 prediction 0.503304600561344 Functional Gain - STEAP2 ENSG00000157214 UTR5 Human protein_coding chr7:89841028 chr7:89841032 . . 0 25 hm5C_associated_SNPs_108043 0 0 0 0 0 Nucleus 0.500231643921653 0.500231643921092 0 0 hm5C_site_61188 DeepMRMD:0;iRNA_m5C:0 61189 chr10 51748683 51748683 1 + C A KIRC 51748682 + 51748662 51748702 41 CACATGCACCACGTTCGTGACCGGGAGATGCCTGAAGGTGA CACATGCACCACGTTCGTGACAGGGAGATGCCTGAAGGTGA < 41bp 0.527349828242325 0.77900200796575 0.7091003 0.68057674 prediction 0.50330435944685 Functional Gain - AGAP6 ENSG00000204149 CDS Human protein_coding chr10:51748682 chr10:51748683 synonymous SNV . 0 22 hm5C_associated_SNPs_108044 0 0 0 0 1 chromatin 0.500264940756777 0.500231643845969 0 0 hm5C_site_61189 DeepMRMD:0;iRNA_m5C:0 61190 chr1 6693072 6693072 1 + C G rs142247203 6693068 + 6693048 6693088 41 CTGGTGATGCGAAGGATGTCCAGCCGCCTCCGTGCTTGCAA CTGGTGATGCGAAGGATGTCCAGCGGCCTCCGTGCTTGCAA < 41bp 0.459891065314371 0.751651837983732 0.3352782 0.8942946 prediction 0.503303675967464 Functional Gain - THAP3 ENSG00000041988 CDS Human protein_coding chr1:6693068 chr1:6693072 nonsynonymous SNV 0.038 2 25 hm5C_associated_SNPs_108045 0 0 0 0 0 Ribosome 0.500231645858578 0.500231643157437 0.7885892 0 hm5C_site_61190 DeepMRMD:0.7885892;iRNA_m5C:0 61191 chr14 74004577 74004577 1 + C A LUSC 74004573 + 74004553 74004593 41 GGGTGCGAGGCACGCTCTTCCTGCCGCCAGGTGACTCACCT GGGTGCGAGGCACGCTCTTCCTGCAGCCAGGTGACTCACCT < 41bp 0.667210735874358 0.918862023816888 0.34562492 0.5904808 prediction 0.503302575885061 Functional Gain - ACOT1 ENSG00000184227 CDS Human protein_coding chr14:74004573 chr14:74004577 nonsynonymous SNV 0.414 4 25 hm5C_associated_SNPs_108046 0 0 0 0 1 nucleus 0.500281727039435 0.500231621566983 0.1809616 0 hm5C_site_61191 DeepMRMD:0.1809616;iRNA_m5C:0 61192 chr3 111795792 111795792 1 + C A rs61729755 111795791 + 111795771 111795811 41 GGGGAATGCCAAGTTTGTCTCCCCGGTGAGAAGAATTGTGG GGGGAATGCCAAGTTTGTCTCACCGGTGAGAAGAATTGTGG < 41bp 0.506640539842069 0.758290919265423 0.6337786 0.8599547 prediction 0.503300758846709 Functional Gain - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111795791 chr3:111795792 synonymous SNV . 0 22 hm5C_associated_SNPs_108047 0 0 0 0 1 exosome 0.500231666525548 0.500231675667614 0.4523522 1.82841333185024e-08 hm5C_site_61192 DeepMRMD:0.4523522;iRNA_m5C:1.82841333185024e-08 61193 chr10 45878095 45878095 1 + C A LUSC 45878094 + 45878074 45878114 41 CCCCTGCTACCGCTGGATCACCGGCGATGTCGAGGTTGTCC CCCCTGCTACCGCTGGATCACAGGCGATGTCGAGGTTGTCC < 41bp 0.540277007919013 0.79192677253522 0.52120095 0.78190887 prediction 0.503299529232414 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45878094 chr10:45878095 synonymous SNV . 0 22 hm5C_associated_SNPs_108048 0 0 1 0 1 Cytosol 0.500231643988131 0.500231643921092 0.52141584 0 hm5C_site_61193 DeepMRMD:0.52141584;iRNA_m5C:0 61194 chr1 6649173 6649173 1 + C G rs1804904 6649172 + 6649152 6649192 41 CGGCCTGGCCTCCCAGCTCCCCGGCCAGAGACTGTGTGCAG CGGCCTGGCCTCCCAGCTCCCGGGCCAGAGACTGTGTGCAG < 41bp 0.602318610828688 0.853962529453679 0.11909199 0.9026636 prediction 0.503287837249983 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6649172 chr1:6649173 synonymous SNV . 0 22 hm5C_associated_SNPs_108049 0 0 1 0 0 Nucleus 0.500231541010322 0.500231643921092 0.8053272 2.05821540921747e-07 hm5C_site_61194 DeepMRMD:0.8053272;iRNA_m5C:2.05821540921747e-07 61195 chr18 46387816 46387816 1 + C A rs369661095 46387812 + 46387792 46387832 41 CAGCCTGGGAACACAGATGCCCCGCGGGTAGGAGGCCTCGA CAGCCTGGGAACACAGATGCCCCGAGGGTAGGAGGCCTCGA < 41bp 0.380905698086117 0.751636023310633 0.083783716 0.06389508 prediction 0.503272046621265 Functional Gain - CTIF ENSG00000134030 UTR3 Human protein_coding chr18:46387812 chr18:46387816 . . 0 25 hm5C_associated_SNPs_108050 0 0 0 0 0 Cytosol 0.500231643921059 0.500231643921087 0 5.6399329650958e-14 hm5C_site_61195 DeepMRMD:0;iRNA_m5C:5.6399329650958e-14 61196 chr1 71512482 71512482 1 + C G CESC 71512478 + 71512458 71512498 41 TGAGATGCCGTGGCCTTGGCCCGGCAGCGGGACACCAGGGC TGAGATGCCGTGGCCTTGGCCCGGGAGCGGGACACCAGGGC < 41bp 0.575111512998486 0.826739319749887 0.80228007 0.9193491 prediction 0.503255613502802 Functional Gain - PTGER3 ENSG00000050628 CDS Human protein_coding chr1:71512478 chr1:71512482 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_108051 0 0 0 0 0 Endoplasmic reticulum 0.500231558817115 0.500231079770246 0.23413806 0 hm5C_site_61196 DeepMRMD:0.23413806;iRNA_m5C:0 61197 chr20 45947806 45947806 1 + C A UCEC 45947805 + 45947785 45947825 41 CCGGATCCTCAGCGGCCTCTCCCAGGGGGAGGAGGAAGAAG CCGGATCCTCAGCGGCCTCTCACAGGGGGAGGAGGAAGAAG < 41bp 0.510830687299193 0.76245796229988 0.36259338 0.83960485 prediction 0.503254550001375 Functional Gain - LOC100131496 ENSG00000267882 CDS Human antisense chr20:45947805 chr20:45947806 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_108052 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0.6792097 0 hm5C_site_61197 DeepMRMD:0.6792097;iRNA_m5C:0 61198 chr20 35173375 35173375 1 + C T OV 35173374 + 35173354 35173394 41 TTCGCAATGTTTGACCAGTCCCAGATCCAGGAGTTTAAGGA TTCGCAATGTTTGACCAGTCCTAGATCCAGGAGTTTAAGGA < 41bp 0.50017332322642 0.751789909680599 0.18599847 0.1509465 prediction 0.503233172908358 Functional Gain - MYL9 ENSG00000101335 CDS Human protein_coding chr20:35173374 chr20:35173375 stopgain 1.000 1 22 hm5C_associated_SNPs_108053 0 0 0 0 1 Cytosol 0.50023164392216 0.500231643921092 0 0 hm5C_site_61198 DeepMRMD:0;iRNA_m5C:0 61199 chr17 65026898 65026898 1 + C G HNSC 65026894 + 65026874 65026914 41 CTCAAGGTCCACCGAGGCCTCGCCCTCCAGGGACGTGTCGC CTCAAGGTCCACCGAGGCCTCGCCGTCCAGGGACGTGTCGC < 41bp 0.551578422558093 0.803182850803955 0.102485836 0.3325886 prediction 0.503208856491723 Functional Gain - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65026894 chr17:65026898 synonymous SNV . 0 25 hm5C_associated_SNPs_108054 0 0 0 0 0 Endoplasmic reticulum 0.50023168767907 0.500231643923711 0 0 hm5C_site_61199 DeepMRMD:0;iRNA_m5C:0 61200 chr15 65152171 65152171 1 + C A SKCM 65152170 + 65152150 65152190 41 GCCCTCAATGAAGGGATTAACCGAGGCAAAAACAAGGCTTT GCCCTCAATGAAGGGATTAACAGAGGCAAAAACAAGGCTTT < 41bp 0.479114895442096 0.751603753887426 0.9085825 0.91581774 prediction 0.503207507774851 Functional Gain - PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65152170 chr15:65152171 synonymous SNV . 0 22 hm5C_associated_SNPs_108055 0 0 0 0 2 chromatin 0.500231632614109 0.500231643021649 0.0144704800000002 2.0815081436254e-08 hm5C_site_61200 DeepMRMD:0.0144704800000002;iRNA_m5C:2.0815081436254e-08 61201 chr2 27666273 27666273 1 + C A OV 27666269 + 27666249 27666289 41 CCTTCTTGCTTTTCAGGATACAGCCTTGGCTCTCTGGATCC CCTTCTTGCTTTTCAGGATACAGCATTGGCTCTCTGGATCC < 41bp 0.350088935763155 0.75160072795834 0.008412689 0.010998219 prediction 0.50320145591668 Functional Gain - KRTCAP3 ENSG00000157992 CDS Human protein_coding chr2:27666269 chr2:27666273 synonymous SNV . 0 25 hm5C_associated_SNPs_108056 0 0 1 0 1 Endoplasmic reticulum 0.500231643921092 0.500231642712343 0 0 hm5C_site_61201 DeepMRMD:0;iRNA_m5C:0 61202 chr1 179013215 179013215 1 + C A COAD 179013214 + 179013194 179013234 41 TGGTTCCCCGGGAAGTGTACCCTGAAGAGACACCAGAGCTG TGGTTCCCCGGGAAGTGTACCATGAAGAGACACCAGAGCTG < 41bp 0.51130031695708 0.762897536916781 0.06541708 0.14940014 prediction 0.503194439919401 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179013214 chr1:179013215 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_108057 0 0 1 0 0 Ribosome 0.500231643703729 0.500231666643967 0 4.58804774172705e-08 hm5C_site_61202 DeepMRMD:0;iRNA_m5C:4.58804774172705e-08 61203 chr12 100707294 100707294 1 + C T SKCM 100707293 + 100707273 100707313 41 ATGTAACTCCGACTGTAAGACCAGATGCAGATCAAATGACA ATGTAACTCCGACTGTAAGACTAGATGCAGATCAAATGACA < 41bp 0.504552649343154 0.756147364867496 0.3485812 0.07430178 prediction 0.503189431048684 Functional Gain - SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100707293 chr12:100707294 nonsynonymous SNV 0.999 1 22 hm5C_associated_SNPs_108058 0 0 1 0 2 chromatin 0.500230525510496 0.500231364125582 0 1.67723017319155e-06 hm5C_site_61203 DeepMRMD:0;iRNA_m5C:1.67723017319155e-06 61204 chr1 16070920 16070920 1 + C A LUAD 16070916 + 16070896 16070936 41 TGCTGGCCCATGCACATGGCCTCCCCCAGCTGCTGGGCCGT TGCTGGCCCATGCACATGGCCTCCACCAGCTGCTGGGCCGT < 41bp 0.31489186124955 0.751593116919092 0.09961194 0.9372822 prediction 0.503186233838184 Functional Gain - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16070916 chr1:16070920 nonsynonymous SNV 0.012 4 25 hm5C_associated_SNPs_108059 0 0 0 0 0 exosome 0.500231643921092 0.500231642802396 0.8745644 0 hm5C_site_61204 DeepMRMD:0.8745644;iRNA_m5C:0 61205 chr1 6688666 6688666 1 + C T HNSC 6688665 + 6688645 6688685 41 TCTGCTCCGAGCACTTCCGGCCAGAGTGCTTCAGCGCCTTT TCTGCTCCGAGCACTTCCGGCTAGAGTGCTTCAGCGCCTTT < 41bp 0.51017714580954 0.761766322000843 0.18593684 0.20809898 prediction 0.503178352382606 Functional Gain - THAP3 ENSG00000041988 CDS Human protein_coding chr1:6688665 chr1:6688666 nonsynonymous SNV 0.400 5 22 hm5C_associated_SNPs_108060 0 0 1 0 1 Ribosome 0.500231643920889 0.500231643921092 0 4.05675493198032e-13 hm5C_site_61205 DeepMRMD:0;iRNA_m5C:4.05675493198032e-13 61206 chr16 70219854 70219854 1 + C T SKCM 70219853 + 70219833 70219873 41 GAACAACCAGCGCTGCAAAACCCGAAACCGTTACATCTGCC GAACAACCAGCGCTGCAAAACTCGAAACCGTTACATCTGCC < 41bp 0.520334958022278 0.771914312089178 0.15913585 0.85626495 prediction 0.5031587081338 Functional Gain - CLEC18C ENSG00000157335 CDS Human protein_coding chr16:70219853 chr16:70219854 synonymous SNV . 0 22 hm5C_associated_SNPs_108061 0 0 0 0 2 exosome 0.500231643921106 0.500231643921088 0.7125299 0 hm5C_site_61206 DeepMRMD:0.7125299;iRNA_m5C:0 61207 chr12 123463804 123463804 1 + C G KIRP 123463800 + 123463780 123463820 41 AACAGCCTCTGTCCCATGTGCTGCCGTGAGCCCGACCTGGT AACAGCCTCTGTCCCATGTGCTGCGGTGAGCCCGACCTGGT < 41bp 0.551168232948391 0.802744046568065 0.108214825 0.28270793 prediction 0.503151627239349 Functional Gain - OGFOD2 ENSG00000111325 CDS Human protein_coding chr12:123463800 chr12:123463804 nonsynonymous SNV 0.010 2 25 hm5C_associated_SNPs_108062 0 0 1 0 0 Cytosol 0.5002316194602 0.500232608596005 0 1.97827161074748e-06 hm5C_site_61207 DeepMRMD:0;iRNA_m5C:1.97827161074748e-06 61208 chr19 16178404 16178404 1 + C A rs111263118 16178400 + 16178380 16178420 41 GCAGCCCCCACAGAGCCCGCCGCGCACCCCACGTCCCCCAC GCAGCCCCCACAGAGCCCGCCGCGAACCCCACGTCCCCCAC < 41bp 0.644960005903303 0.896533753971389 0.2662185 0.6252229 prediction 0.50314749613617 Functional Gain - TPM4 ENSG00000167460 UTR5 Human protein_coding chr19:16178400 chr19:16178404 . . 0 25 hm5C_associated_SNPs_108063 0 0 0 0 0 Ribosome 0.500231643921096 0.500231643921302 0.2504458 4.13225009765483e-13 hm5C_site_61208 DeepMRMD:0.2504458;iRNA_m5C:4.13225009765483e-13 61209 chr14 75894945 75894945 1 + C G rs113661747 75894941 + 75894921 75894961 41 CCGGGGGCGCCGCCTCCCCCCGCACCTTCTGCACGGTGGGT CCGGGGGCGCCGCCTCCCCCCGCAGCTTCTGCACGGTGGGT < 41bp 0.490506174951195 0.751569833743069 0.1970107 0.33952552 prediction 0.503139667486138 Functional Gain - JDP2 ENSG00000140044 UTR5 Human protein_coding chr14:75894941 chr14:75894945 . . 0 25 hm5C_associated_SNPs_108064 0 0 1 0 1 Ribosome 0.500231642718764 0.500231643843831 0 2.25013541133023e-09 hm5C_site_61209 DeepMRMD:0;iRNA_m5C:2.25013541133023e-09 61210 chr15 22940792 22940792 1 + C T OV 22940791 + 22940771 22940811 41 TGCGAGCAGATGATCCAGATCCGCGAGGACCACATGCGCTT TGCGAGCAGATGATCCAGATCTGCGAGGACCACATGCGCTT < 41bp 0.502287604260402 0.753849749668484 0.85030305 0.79915583 prediction 0.503124290816165 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22940791 chr15:22940792 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_108065 0 0 1 0 2 Cytosol 0.500231489889389 0.500231644002638 0 3.08226496548158e-07 hm5C_site_61210 DeepMRMD:0;iRNA_m5C:3.08226496548158e-07 61211 chr5 178373424 178373424 1 + C A COAD 178373423 + 178373403 178373443 41 AAGAGTGGGGGCAGCTGAGCCCCGCCCAGAGGGCCCTGTAC AAGAGTGGGGGCAGCTGAGCCACGCCCAGAGGGCCCTGTAC < 41bp 0.502964375910766 0.754511936576416 0.03787154 0.061041713 prediction 0.5030951213313 Functional Gain - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178373423 chr5:178373424 nonsynonymous SNV 0.023 2 22 hm5C_associated_SNPs_108066 0 0 0 0 2 exosome 0.500231643921093 0.500231643921139 0 9.2148511043888e-14 hm5C_site_61211 DeepMRMD:0;iRNA_m5C:9.2148511043888e-14 61212 chr19 47880446 47880446 1 + C T rs187504350 47880445 + 47880425 47880465 41 CCGTACCTGGTGAACTGCGTCCGCATCCCTGCCCTCCAGGT CCGTACCTGGTGAACTGCGTCTGCATCCCTGCCCTCCAGGT < 41bp 0.492618383463191 0.751545033155445 0.21820709 0.2607977 prediction 0.503090066310889 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47880445 chr19:47880446 nonsynonymous SNV 0.989 3 22 hm5C_associated_SNPs_108067 0 0 1 0 2 Ribosome 0.500231597634135 0.500231643921007 0 9.25737437817986e-08 hm5C_site_61212 DeepMRMD:0;iRNA_m5C:9.25737437817986e-08 61213 chr9 139740174 139740174 1 + C A rs565217311 139740170 + 139740150 139740190 41 CGGCGGCACCGGCACCAGTCCGCCCCGGCTGGCCACCGACA CGGCGGCACCGGCACCAGTCCGCCACGGCTGGCCACCGACA < 41bp 0.347027351793266 0.751542188193379 0.13295224 0.14919975 prediction 0.503084376386759 Functional Gain - C9orf172 ENSG00000232434 CDS Human protein_coding chr9:139740170 chr9:139740174 synonymous SNV . 0 25 hm5C_associated_SNPs_108068 0 0 0 0 0 chromatin 0.500231643913116 0.500231643921092 0 1.5952350551629e-11 hm5C_site_61213 DeepMRMD:0;iRNA_m5C:1.5952350551629e-11 61214 chr16 20838466 20838466 1 + C A LGG 20838465 + 20838445 20838485 41 AGTTAAAAGCACTGCTTCCTCCTGATGCTGTGTTAGTGGGC AGTTAAAAGCACTGCTTCCTCATGATGCTGTGTTAGTGGGC < 41bp 0.518512077724496 0.770049645320515 0.11234513 0.1818594 prediction 0.503075135192038 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20838465 chr16:20838466 nonsynonymous SNV 0.999 0 22 hm5C_associated_SNPs_108069 0 0 1 0 2 unknown 0.500231645766268 0.500227280118299 0 0 hm5C_site_61214 DeepMRMD:0;iRNA_m5C:0 61215 chr8 19253202 19253202 1 + C G rs77716156 19253198 + 19253178 19253218 41 ACACCAAGGATCTCCGGCCACCAGCAGAAGCCAGCAGAGAG ACACCAAGGATCTCCGGCCACCAGGAGAAGCCAGCAGAGAG < 41bp 0.491881752340475 0.751533600182523 0.25080764 0.6097855 prediction 0.503067200365046 Functional Gain - SH2D4A ENSG00000104611 UTR3 Human protein_coding chr8:19253198 chr8:19253202 . . 0 25 hm5C_associated_SNPs_108070 0 0 0 0 0 Nucleus 0.5003180451644 0.500239894622481 0.219571 0 hm5C_site_61215 DeepMRMD:0.219571;iRNA_m5C:0 61216 chr22 29445508 29445508 1 + C T UCEC 29445507 + 29445487 29445527 41 TACTCCCCAGCCCACCCCTTCCGCAGGCCCAAGTTGAGTGG TACTCCCCAGCCCACCCCTTCTGCAGGCCCAAGTTGAGTGG < 41bp 0.532460918284179 0.783990463037365 0.13598844 0.22183567 prediction 0.503059089506372 Functional Gain - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29445507 chr22:29445508 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108071 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61216 DeepMRMD:0;iRNA_m5C:0 61217 chr3 183994288 183994288 1 + C G LUAD 183994284 + 183994264 183994304 41 GGCAGATGGTGGAGTACAAACGGGCCACGCTTCGGGATGAA GGCAGATGGTGGAGTACAAACGGGGCACGCTTCGGGATGAA < 41bp 0.583315041848483 0.834835179348532 0.8930809 0.9165884 prediction 0.503040275000097 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:183994284 chr3:183994288 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_108072 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.047015 0 hm5C_site_61217 DeepMRMD:0.047015;iRNA_m5C:0 61218 chr4 7055826 7055826 1 + C T SKCM 7055825 + 7055805 7055845 41 ACGTTGGTGCTTCCCGGACTCCCCAAGAGGTGATGGAGCAT ACGTTGGTGCTTCCCGGACTCTCCAAGAGGTGATGGAGCAT < 41bp 0.494081982203575 0.751519979352226 0.15500611 0.9666296 prediction 0.503039958704451 Functional Gain - TADA2B ENSG00000173011 CDS Human protein_coding chr4:7055825 chr4:7055826 nonsynonymous SNV 0.735 2 22 hm5C_associated_SNPs_108073 0 0 1 0 1 chromatin 0.500233280955167 0.500291415246044 0.9332592 0.000116268581754175 hm5C_site_61218 DeepMRMD:0.9332592;iRNA_m5C:0.000116268581754175 61219 chr15 69747556 69747556 1 + C G rs78395337 69747555 + 69747535 69747575 41 CCTCATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAG CCTCATCTGCAATGTAGGGGCGGGTGGACCTGCTCCAGCAG < 41bp 0.614029678367405 0.865545888312261 0.8597373 0.8893248 prediction 0.503032419889712 Functional Gain - RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747555 chr15:69747556 synonymous SNV . 0 22 hm5C_associated_SNPs_108074 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921092 0.059175 0 hm5C_site_61219 DeepMRMD:0.059175;iRNA_m5C:0 61220 chr16 69375484 69375484 1 + C T OV 69375483 + 69375463 69375503 41 CAAGACTGCAGAAAAGTAGACCCCATGGCGATTGTGGTATT CAAGACTGCAGAAAAGTAGACTCCATGGCGATTGTGGTATT < 41bp 0.50269268548636 0.754192343549216 0.12111947 0.9298459 prediction 0.502999316125712 Functional Gain - NIP7 ENSG00000132603 CDS Human protein_coding chr16:69375483 chr16:69375484 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_108075 0 0 1 0 0 Ribosome 0.500231643918144 0.500231644477188 0.8596918 1.11808828862081e-09 hm5C_site_61220 DeepMRMD:0.8596918;iRNA_m5C:1.11808828862081e-09 61221 chr19 48216659 48216659 1 + C A rs187650881 48216655 + 48216635 48216675 41 CTGTCCTCCCTCCCGTCCTCCCCGCTCCGGGCCCCACCCGG CTGTCCTCCCTCCCGTCCTCCCCGATCCGGGCCCCACCCGG < 41bp 0.39472639207578 0.751495327920374 0.0522981 0.027322173 prediction 0.502990655840747 Functional Gain - EHD2 ENSG00000268746 ncRNA_intronic Human lincRNA chr19:48216655 chr19:48216659 . . 0 25 hm5C_associated_SNPs_108076 0 0 0 0 0 Nucleus 0.50023165360234 0.500222305861262 0 0 hm5C_site_61221 DeepMRMD:0;iRNA_m5C:0 61222 chr20 57769218 57769218 1 + C A ACC 57769217 + 57769197 57769237 41 CATCTCAGCACCAGGGGCTCCCAGGGAGGCTACCTCCTCCC CATCTCAGCACCAGGGGCTCCAAGGGAGGCTACCTCCTCCC < 41bp 0.505057414774926 0.756551536171825 0.92972016 0.9109271 prediction 0.502988242793797 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57769217 chr20:57769218 synonymous SNV . 0 22 hm5C_associated_SNPs_108077 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61222 DeepMRMD:0;iRNA_m5C:0 61223 chr2 85510662 85510662 1 + C T rs111816159 85510661 + 85510641 85510681 41 CCTCGATGTCCCCTCCAGCGCCACAGTCAAGGACACGAGGT CCTCGATGTCCCCTCCAGCGCTACAGTCAAGGACACGAGGT < 41bp 0.495675721739429 0.751482091090817 0.09398782 0.10977891 prediction 0.502964182181634 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85510661 chr2:85510662 synonymous SNV . 0 22 hm5C_associated_SNPs_108078 0 0 0 0 2 Endoplasmic reticulum 0.500231643921096 0.500231643921092 0 0 hm5C_site_61223 DeepMRMD:0;iRNA_m5C:0 61224 chrX 82763752 82763752 1 + C A LUSC 82763751 + 82763731 82763771 41 GTACTCGCAGCCTGGCTTCACCGTGAGCGGCATGCTGGAAC GTACTCGCAGCCTGGCTTCACAGTGAGCGGCATGCTGGAAC < 41bp 0.514245692714983 0.765725935550074 0.8696095 0.90894425 prediction 0.502960485670181 Functional Gain - POU3F4 ENSG00000196767 CDS Human protein_coding chrX:82763751 chrX:82763752 synonymous SNV . 0 22 hm5C_associated_SNPs_108079 0 0 0 0 0 unknown 0.50024343697596 0.500235001294302 0.0786694999999999 0 hm5C_site_61224 DeepMRMD:0.0786694999999999;iRNA_m5C:0 61225 chr7 27868376 27868376 1 + T G UCEC 27868374 + 27868354 27868394 41 TGTGCAGCGAGCAGTTCCCTCCTGACTATGACCAGCAGGTG TGTGCAGCGAGCAGTTCCCTCCGGACTATGACCAGCAGGTG < 41bp 0.430398330069924 0.751479373831442 0.040960193 0.41183975 prediction 0.502958747662884 Functional Gain - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27868374 chr7:27868376 synonymous SNV . 0 23 hm5C_associated_SNPs_108080 0 0 1 0 0 Ribosome 0.500231643921233 0.500231643921093 0 0 hm5C_site_61225 DeepMRMD:0;iRNA_m5C:0 61226 chr16 89661901 89661901 1 + T A BLCA 89661897 + 89661877 89661917 41 ATCGTGGGCGTGGGCAACGCCGACTTCACCGACATGCAGGT ATCGTGGGCGTGGGCAACGCCGACATCACCGACATGCAGGT < 41bp 0.420920816737736 0.751463739749216 0.08801326 0.1331132 prediction 0.502927479498432 Functional Gain - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89661897 chr16:89661901 nonsynonymous SNV 0.966 4 25 hm5C_associated_SNPs_108081 0 0 1 0 0 Nucleus 0.500229251288449 0.50019931522895 0 0 hm5C_site_61226 DeepMRMD:0;iRNA_m5C:0 61227 chr6 43106668 43106668 1 + C A UCEC 43106664 + 43106644 43106684 41 GCTACTTGGATTGCCTGACCCAGGCCACACCAAAACCTACA GCTACTTGGATTGCCTGACCCAGGACACACCAAAACCTACA < 41bp 0.342864686584861 0.751456379721667 0.51147425 0.4073432 prediction 0.502912759443334 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43106664 chr6:43106668 nonsynonymous SNV 0.989 4 25 hm5C_associated_SNPs_108082 0 0 1 0 2 Endoplasmic reticulum 0.500231643921094 0.500231643921093 0 0 hm5C_site_61227 DeepMRMD:0;iRNA_m5C:0 61228 chr19 13868275 13868275 1 + C T SKCM 13868274 + 13868254 13868294 41 TGGTGCGATGGCTGCAAGAACCACATCGGCATGGGTGAGCC TGGTGCGATGGCTGCAAGAACTACATCGGCATGGGTGAGCC < 41bp 0.525786921190616 0.777242780515685 0.07022998 0.8256378 prediction 0.502911718650138 Functional Gain - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13868274 chr19:13868275 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108083 0 0 1 0 2 Cytosol 0.500206454051384 0.500231433229452 0.6512756 4.99583561350825e-05 hm5C_site_61228 DeepMRMD:0.6512756;iRNA_m5C:4.99583561350825e-05 61229 chr22 21044595 21044595 1 + A G COAD 21044592 + 21044572 21044612 41 TGCCCGGGCCCGGGCCTCTGCAGACAGACCTCCATGCCCAG TGCCCGGGCCCGGGCCTCTGCAGGCAGACCTCCATGCCCAG < 41bp 0.505593220506696 0.757039361815582 0.536131 0.9216127 prediction 0.502892282617772 Functional Gain - POM121L4P ENSG00000217261 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:21044592 chr22:21044595 . . 0 24 hm5C_associated_SNPs_108084 0 0 0 0 0 unknown 0.500231643919111 0.500231643905008 0.7709634 0 hm5C_site_61229 DeepMRMD:0.7709634;iRNA_m5C:0 61230 chr10 88418410 88418410 1 + C A LUAD 88418409 + 88418389 88418429 41 GCTGGGCGTTTGGCTCTATGCCCTGGCCTGGAGTCTGCCAC GCTGGGCGTTTGGCTCTATGCACTGGCCTGGAGTCTGCCAC < 41bp 0.522382963083981 0.773825784190444 0.1813893 0.1939202 prediction 0.502885642212927 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88418409 chr10:88418410 synonymous SNV . 0 22 hm5C_associated_SNPs_108085 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61230 DeepMRMD:0;iRNA_m5C:0 61231 chr9 136505055 136505055 1 + C A UCEC 136505054 + 136505034 136505074 41 GTGCAGAGGACCCCAGAAGGCCTGACCCTGCTTTTCAAGAG GTGCAGAGGACCCCAGAAGGCATGACCCTGCTTTTCAAGAG < 41bp 0.521365467813754 0.772806385406647 0.05301991 0.14246255 prediction 0.502881835185786 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136505054 chr9:136505055 nonsynonymous SNV 0.209 2 22 hm5C_associated_SNPs_108086 0 0 0 0 2 cytosol 0.500231643919899 0.500231643921108 0 2.41739961381882e-12 hm5C_site_61231 DeepMRMD:0;iRNA_m5C:2.41739961381882e-12 61232 chr7 100732085 100732085 1 + C T SKCM 100732084 + 100732064 100732104 41 CCCATCTTTTACTGCAGTTTCCCCACGCGGATGCCTGGAGA CCCATCTTTTACTGCAGTTTCTCCACGCGGATGCCTGGAGA < 41bp 0.489448509597416 0.751433598025294 0.20504934 0.94767034 prediction 0.502867196050588 Functional Gain - TRIM56 ENSG00000169871 CDS Human protein_coding chr7:100732084 chr7:100732085 nonsynonymous SNV 0.965 1 22 hm5C_associated_SNPs_108087 0 0 1 0 0 nucleus 0.500231643921093 0.500231643931619 0.89534068 2.10524930821521e-11 hm5C_site_61232 DeepMRMD:0.89534068;iRNA_m5C:2.10524930821521e-11 61233 chr11 105774688 105774688 1 + T C HNSC 105774686 + 105774666 105774706 41 CCATGGGGCCAGGGAATTGACATGGAGAGGACACTCAAACA CCATGGGGCCAGGGAATTGACACGGAGAGGACACTCAAACA < 41bp 0.514454448762354 0.765887090017962 0.58218867 0.562935 prediction 0.502865282511216 Functional Gain - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105774686 chr11:105774688 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_108088 0 0 0 0 1 nucleoplasm 0.500231645140839 0.50023164392114 0 0 hm5C_site_61233 DeepMRMD:0;iRNA_m5C:0 61234 chr17 3628255 3628255 1 + T G UCEC 3628253 + 3628233 3628273 41 GATCAAGCCGGAAGAGCAAACATCAGGAGGCAACGGAAACC GATCAAGCCGGAAGAGCAAACAGCAGGAGGCAACGGAAACC < 41bp 0.62307114997424 0.874493272770206 0.07312578 0.16874945 prediction 0.502844245591932 Functional Gain - HASPIN ENSG00000177602 CDS Human protein_coding chr17:3628253 chr17:3628255 nonsynonymous SNV 0.013 0 23 hm5C_associated_SNPs_108089 0 0 0 0 0 unknown 0.500231643921093 0.500231643921108 0 3.15303338993544e-14 hm5C_site_61234 DeepMRMD:0;iRNA_m5C:3.15303338993544e-14 61235 chr1 111862952 111862952 1 + T G rs2256721 111862949 + 111862929 111862969 41 GGGAGGCAGTGGATTCTGTGCTGTCAGAGCCAACGGCCTCT GGGAGGCAGTGGATTCTGTGCTGGCAGAGCCAACGGCCTCT < 41bp 0.357512385269533 0.751407828372736 0.08538082 0.30437934 prediction 0.502815656745473 Functional Gain - CHIA ENSG00000134216 CDS Human protein_coding chr1:111862949 chr1:111862952 nonsynonymous SNV 0.295 0 24 hm5C_associated_SNPs_108090 0 0 0 0 0 exosome 0.500231647384918 0.500231645197925 0 0 hm5C_site_61235 DeepMRMD:0;iRNA_m5C:0 61236 chr5 140564192 140564192 1 + C G BLCA 140564188 + 140564168 140564208 41 CGGCCAGACCCAGGCCAACTCGCTCACTGTCTACCTGGTGG CGGCCAGACCCAGGCCAACTCGCTGACTGTCTACCTGGTGG < 41bp 0.555632068281121 0.80703700094613 0.30518 0.36442113 prediction 0.502809865330018 Functional Gain - PCDHB16 ENSG00000196963 CDS Human other chr5:140564188 chr5:140564192 synonymous SNV . 0 25 hm5C_associated_SNPs_108091 0 0 0 0 0 Nucleus 0.500231626993551 0.500231650262818 0 4.65385343595415e-08 hm5C_site_61236 DeepMRMD:0;iRNA_m5C:4.65385343595415e-08 61237 chr19 34832424 34832424 1 + T C COAD 34832422 + 34832402 34832442 41 TTCTGGAAATGGAAACAAATCTTCAGGTGGCCTGCAGAAGA TTCTGGAAATGGAAACAAATCTCCAGGTGGCCTGCAGAAGA < 41bp 0.457442316086876 0.751400989209297 0.8012124 0.9621738 prediction 0.502801978418595 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34832422 chr19:34832424 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_108092 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643921092 0.3219228 0 hm5C_site_61237 DeepMRMD:0.3219228;iRNA_m5C:0 61238 chr20 31606541 31606541 1 + C A ESCA 31606540 + 31606520 31606560 41 TACCGAGGGCTCCATGGCCACCGTGGGCCTCTCCCAGCAGC TACCGAGGGCTCCATGGCCACAGTGGGCCTCTCCCAGCAGC < 41bp 0.484698973991558 0.751396631137277 0.40783286 0.6473112 prediction 0.502793262274553 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31606540 chr20:31606541 synonymous SNV . 0 22 hm5C_associated_SNPs_108093 0 0 1 0 2 cytosol 0.500231643673734 0.500231643909697 0.2946224 4.71924721523465e-10 hm5C_site_61238 DeepMRMD:0.2946224;iRNA_m5C:4.71924721523465e-10 61239 chr1 15541680 15541680 1 + C A PAAD 15541679 + 15541659 15541699 41 GTGATCATGGCCATGTGGAACCTGGTACCCGGCTTCAGCGC GTGATCATGGCCATGTGGAACATGGTACCCGGCTTCAGCGC < 41bp 0.499612525841419 0.75139302565131 0.31578925 0.42235404 prediction 0.50278605130262 Functional Gain - TMEM51 ENSG00000171729 CDS Human protein_coding chr1:15541679 chr1:15541680 nonsynonymous SNV 0.949 4 22 hm5C_associated_SNPs_108094 0 0 1 0 0 cytosol 0.500231643920394 0.500231643881689 0 0 hm5C_site_61239 DeepMRMD:0;iRNA_m5C:0 61240 chr10 85973846 85973846 1 + C T SKCM 85973845 + 85973825 85973865 41 CTTTCTCTTTCAGACCCTCTCCCGGAGCCCCATGGCTGCCT CTTTCTCTTTCAGACCCTCTCTCGGAGCCCCATGGCTGCCT < 41bp 0.498615165875416 0.751392240640659 0.87025094 0.51723135 prediction 0.502784481281318 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85973845 chr10:85973846 synonymous SNV . 0 22 hm5C_associated_SNPs_108095 0 0 0 0 1 cytosol 0.500231643921093 0.500231643938131 0 3.40760752948199e-11 hm5C_site_61240 DeepMRMD:0;iRNA_m5C:3.40760752948199e-11 61241 chr20 25656657 25656657 1 + G T LIHC 25656658 - 25656638 25656678 41 AAGTCAACTCTTGTCTACCACCAGAGAACACACTCAGGGGA AAGTCAACTCTTGTCTACCACAAGAGAACACACTCAGGGGA < 41bp 0.524309735863239 0.775686863668221 0.41129193 0.5394956 prediction 0.502754255609965 Functional Gain - ZNF337 ENSG00000130684 CDS Human protein_coding chr20:25656658 chr20:25656657 nonsynonymous SNV 0.110 2 22 hm5C_associated_SNPs_108096 0 0 1 0 0 Cytosol 0.500237464144414 0.500231763736343 0.0789911999999999 0 hm5C_site_61241 DeepMRMD:0.0789911999999999;iRNA_m5C:0 61242 chr2 97217854 97217854 1 + T A BRCA 97217850 + 97217830 97217870 41 CTGCACTCCCCTTCAGCCCCCTGGTCATCCCGGCCTTCCCG CTGCACTCCCCTTCAGCCCCCTGGACATCCCGGCCTTCCCG < 41bp 0.59979544441702 0.85116946224246 0.30864558 0.5980759 prediction 0.50274803565088 Functional Gain - ARID5A ENSG00000196843 CDS Human protein_coding chr2:97217850 chr2:97217854 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_108097 0 0 0 0 0 Cytosol 0.500231643921092 0.500231643921092 0.1961518 0 hm5C_site_61242 DeepMRMD:0.1961518;iRNA_m5C:0 61243 chr3 142840553 142840553 1 + C G LUAD 142840552 + 142840532 142840572 41 GAGGAGGAGTGCCGCAAGTACCGCACACTAGTCATAAAGGG GAGGAGGAGTGCCGCAAGTACGGCACACTAGTCATAAAGGG < 41bp 0.606071033216482 0.857444749418389 0.050887614 0.16575673 prediction 0.502747432403812 Functional Gain - CHST2 ENSG00000175040 CDS Human protein_coding chr3:142840552 chr3:142840553 nonsynonymous SNV 0.998 1 22 hm5C_associated_SNPs_108098 0 0 0 0 0 cytosol 0.500231643919624 0.500231643920563 0 1.87960758069039e-12 hm5C_site_61243 DeepMRMD:0;iRNA_m5C:1.87960758069039e-12 61244 chr22 35796450 35796450 1 + C G BLCA 35796446 + 35796426 35796466 41 GCAGTCATGTCGGGATTCGACGATCCTGGCATTTTCTACAG GCAGTCATGTCGGGATTCGACGATGCTGGCATTTTCTACAG < 41bp 0.464185266681557 0.751373355277558 0.4273547 0.65721506 prediction 0.502746710555115 Functional Gain - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35796446 chr22:35796450 nonsynonymous SNV 0.979 1 25 hm5C_associated_SNPs_108099 0 0 1 0 1 Cytosol 0.500231643921543 0.500231643924142 0.31443012 5.19873033510976e-12 hm5C_site_61244 DeepMRMD:0.31443012;iRNA_m5C:5.19873033510976e-12 61245 chr19 17597444 17597444 1 + C A SKCM 17597440 + 17597420 17597460 41 GCGTGCCGGCCACACCATCCCGCGCATCTTTCAGGCGGTAG GCGTGCCGGCCACACCATCCCGCGAATCTTTCAGGCGGTAG < 41bp 0.660698832941444 0.912064477353382 0.3327495 0.5650019 prediction 0.502731288823876 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17597440 chr19:17597444 synonymous SNV . 0 25 hm5C_associated_SNPs_108100 0 0 0 0 1 Endoplasmic reticulum 0.500231643923786 0.500231644401814 0.1300038 9.56055234979658e-10 hm5C_site_61245 DeepMRMD:0.1300038;iRNA_m5C:9.56055234979658e-10 61246 chr11 1651762 1651762 1 + T A LUSC 1651758 + 1651738 1651778 41 GCCAGTCCAGCTGCTGTGTCCCCGTGTGCTGCCAGTGTAAG GCCAGTCCAGCTGCTGTGTCCCCGAGTGCTGCCAGTGTAAG < 41bp 0.444267958722442 0.751359811324507 0.065235525 0.14867699 prediction 0.502719622649014 Functional Gain - KRTAP5-5 ENSG00000185940 CDS Human protein_coding chr11:1651758 chr11:1651762 nonsynonymous SNV 0.563 1 25 hm5C_associated_SNPs_108101 0 0 0 0 0 unknown 0.500231882470276 0.500231595055201 0 0 hm5C_site_61246 DeepMRMD:0;iRNA_m5C:0 61247 chr12 57485593 57485593 1 + C T SKCM 57485592 + 57485572 57485612 41 GAGAGGATCTTCCGGAGCTTCCCAAGGGGGGATGCTGGGGA GAGAGGATCTTCCGGAGCTTCTCAAGGGGGGATGCTGGGGA < 41bp 0.537169022341581 0.788515593362172 0.40444967 0.60014313 prediction 0.502693142041184 Functional Gain - NAB2 ENSG00000166886 CDS Human protein_coding chr12:57485592 chr12:57485593 nonsynonymous SNV 0.994 2 22 hm5C_associated_SNPs_108102 0 0 1 0 0 Cytosol 0.500231624291857 0.500231643921139 0.20028626 3.92585637332132e-08 hm5C_site_61247 DeepMRMD:0.20028626;iRNA_m5C:3.92585637332132e-08 61248 chr15 81294022 81294022 1 + C G rs190004178 81294021 + 81294001 81294041 41 GCCGCCGTCGCGGGGAAGTGCCGCCTGGTGGGGTCACGGCG GCCGCCGTCGCGGGGAAGTGCGGCCTGGTGGGGTCACGGCG < 41bp 0.488306111939801 0.751344604586307 0.9022683 0.9116787 prediction 0.502689209172615 Functional Gain - TLNRD1 ENSG00000140406 UTR5 Human protein_coding chr15:81294021 chr15:81294022 . . 0 22 hm5C_associated_SNPs_108103 0 0 1 0 0 unknown 0.500231642885648 0.500231643921085 0.0188207999999999 2.07087325065913e-09 hm5C_site_61248 DeepMRMD:0.0188207999999999;iRNA_m5C:2.07087325065913e-09 61249 chr11 22296233 22296233 1 + T G rs146136277 22296231 + 22296211 22296251 41 AATAATAGCCTGTCAGTATTCCTGATAGCTGATTTTCCAAA AATAATAGCCTGTCAGTATTCCGGATAGCTGATTTTCCAAA < 41bp 0.416591534408897 0.751336263536889 0.24097213 0.79641163 prediction 0.502672527073778 Functional Gain - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22296231 chr11:22296233 nonsynonymous SNV 0.999 1 23 hm5C_associated_SNPs_108104 2 0 0 0 1 chromatin 0.50023164392039 0.500231643920656 0.59282326 5.32907051820075e-13 hm5C_site_61249 DeepMRMD:0.59282326;iRNA_m5C:5.32907051820075e-13 not specified not specified 61250 chr11 15197518 15197518 1 + C A LUAD 15197517 + 15197497 15197537 41 CAGGATCGGGCAGAAGCTGGCCCAGGACCGCTGGGCACGGG CAGGATCGGGCAGAAGCTGGCACAGGACCGCTGGGCACGGG < 41bp 0.489796070310966 0.751331141843019 0.21321845 0.34164503 prediction 0.502662283686039 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15197517 chr11:15197518 synonymous SNV . 0 22 hm5C_associated_SNPs_108105 0 0 0 0 0 exosome 0.500231643921094 0.500231643949681 0 5.71740432775414e-11 hm5C_site_61250 DeepMRMD:0;iRNA_m5C:5.71740432775414e-11 61251 chr2 43934621 43934621 1 + C G BRCA 43934620 + 43934600 43934640 41 GACAGCTCCAGATCCAGCTCCCGGACGTCAGAGTCAGACTC GACAGCTCCAGATCCAGCTCCGGGACGTCAGAGTCAGACTC < 41bp 0.433173611463912 0.751330876637254 0.61383814 0.7222557 prediction 0.502661753274507 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43934620 chr2:43934621 nonsynonymous SNV 0.784 0 22 hm5C_associated_SNPs_108106 0 0 0 0 2 Ribosome 0.50023164202499 0.500231648997348 0.21683512 1.39447162705864e-08 hm5C_site_61251 DeepMRMD:0.21683512;iRNA_m5C:1.39447162705864e-08 61252 chr11 134153721 134153721 1 + C G rs147078049 134153720 + 134153700 134153740 41 GTATTTTGACCACCTGATTCCCAGAGTGATTCCTCTCCAGG GTATTTTGACCACCTGATTCCGAGAGTGATTCCTCTCCAGG < 41bp 0.438105373681589 0.751326199278914 0.4279153 0.8462733 prediction 0.502652398557827 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134153720 chr11:134153721 synonymous SNV . 0 22 hm5C_associated_SNPs_108107 0 0 0 0 2 Nucleus 0.500215690425947 0.500174850224927 0.6925466 0 hm5C_site_61252 DeepMRMD:0.6925466;iRNA_m5C:0 61253 chr7 117876881 117876881 1 + T C LUSC 117876879 + 117876859 117876899 41 TGCTGTCAGTGGTGAACCACCATGTTTAGTAAAGCTTCTTC TGCTGTCAGTGGTGAACCACCACGTTTAGTAAAGCTTCTTC < 41bp 0.521848515316507 0.773154914748773 0.0507119 0.055894524 prediction 0.502612798864533 Functional Gain - ANKRD7 ENSG00000106013 CDS Human protein_coding chr7:117876879 chr7:117876881 nonsynonymous SNV 0.001 0 23 hm5C_associated_SNPs_108108 0 0 0 0 2 nucleus 0.500231644843267 0.500231644223627 0 0 hm5C_site_61253 DeepMRMD:0;iRNA_m5C:0 61254 chr7 150746080 150746080 1 + C A ACC 150746076 + 150746056 150746096 41 GCTGGGCCACGTCTTCGGGCCAGGCAGCCTGAGCCTGCGCC GCTGGGCCACGTCTTCGGGCCAGGAAGCCTGAGCCTGCGCC < 41bp 0.65990087239469 0.91118742099185 0.177522 0.30493945 prediction 0.502573097194321 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150746076 chr7:150746080 synonymous SNV . 0 25 hm5C_associated_SNPs_108109 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61254 DeepMRMD:0;iRNA_m5C:0 61255 chr14 35591581 35591581 1 + G C rs192137584 35591582 - 35591562 35591602 41 TCAGGGGACCTGGAAGGCTTCCAGATATCCGCAATGAACAA TCAGGGGACCTGGAAGGCTTCGAGATATCCGCAATGAACAA < 41bp 0.471790551022896 0.751281405414386 0.78487146 0.86667824 prediction 0.502562810828771 Functional Gain - KIAA0391;PPP2R3C ENSG00000092020;ENSG00000100890 UTR5 Human other chr14:35591582 chr14:35591581 . . 0 22 hm5C_associated_SNPs_108110 0 0 0 0 0 unknown 0.500231642753647 0.500231620170716 0.16361356 0 hm5C_site_61255 DeepMRMD:0.16361356;iRNA_m5C:0 61256 chr3 101540541 101540541 1 + C T SKCM 101540540 + 101540520 101540560 41 GTTCGGCTCCTCGATCGAAGCCCAAAGACCGTGGTGGTCAT GTTCGGCTCCTCGATCGAAGCTCAAAGACCGTGGTGGTCAT < 41bp 0.514933744323467 0.766211590080008 0.25499707 0.79775906 prediction 0.502555691513081 Functional Gain - NXPE3 ENSG00000144815 CDS Human protein_coding chr3:101540540 chr3:101540541 nonsynonymous SNV 0.993 4 22 hm5C_associated_SNPs_108111 0 0 0 0 0 Ribosome 0.500231643880342 0.500231643906651 0.59551812 5.26190202521093e-11 hm5C_site_61256 DeepMRMD:0.59551812;iRNA_m5C:5.26190202521093e-11 61257 chr4 1388600 1388600 1 + C G LUAD 1388596 + 1388576 1388616 41 GAGTGCCACCTGCTCACACACGTGCCCATGTGGAGTGCCCG GAGTGCCACCTGCTCACACACGTGGCCATGTGGAGTGCCCG < 41bp 0.474875686545035 0.751273183426349 0.25811377 0.5344654 prediction 0.502546366852697 Functional Gain - CRIPAK ENSG00000179979 CDS Human protein_coding chr4:1388596 chr4:1388600 nonsynonymous SNV 0.003 0 25 hm5C_associated_SNPs_108112 0 0 0 0 0 chromatin 0.500229870228763 0.500231643229827 0.0689308 3.54600212815193e-06 hm5C_site_61257 DeepMRMD:0.0689308;iRNA_m5C:3.54600212815193e-06 61258 chr19 42795782 42795782 1 + T A ACC 42795778 + 42795758 42795798 41 AGCTGCTGCCTGGGAAGGTCCTAGTGCCTCTGGCCGCCCCT AGCTGCTGCCTGGGAAGGTCCTAGAGCCTCTGGCCGCCCCT < 41bp 0.608623363378834 0.859892834670125 0.47993132 0.73902845 prediction 0.502538942582582 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42795778 chr19:42795782 nonsynonymous SNV 0.993 2 25 hm5C_associated_SNPs_108113 0 0 1 0 1 Cytosol 0.500231643921093 0.500231643921092 0.4780569 0 hm5C_site_61258 DeepMRMD:0.4780569;iRNA_m5C:0 61259 chr7 127238546 127238546 1 + C T COAD 127238545 + 127238525 127238565 41 CTGGAGTCTGACACGTTCTTCCGAATGCACTGGAACTGTGG CTGGAGTCTGACACGTTCTTCTGAATGCACTGGAACTGTGG < 41bp 0.502148480285109 0.753417616356558 0.4582926 0.33516288 prediction 0.502538272142898 Functional Gain - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127238545 chr7:127238546 stopgain 0.717 0 22 hm5C_associated_SNPs_108114 0 0 0 0 1 exosome 0.500231644433136 0.500231645601094 0 2.33591612719408e-09 hm5C_site_61259 DeepMRMD:0;iRNA_m5C:2.33591612719408e-09 61260 chr8 145247317 145247317 1 + C G rs373072073 145247313 + 145247293 145247333 41 CTGCACTCCCAGGTAGGAGGCGGGCGTCAGGGGGCGGGTCC CTGCACTCCCAGGTAGGAGGCGGGGGTCAGGGGGCGGGTCC < 41bp 0.45553056758284 0.7512690375591 0.92772305 0.94054615 prediction 0.5025380751182 Functional Gain - MROH1 ENSG00000179832 intronic Human protein_coding chr8:145247313 chr8:145247317 . . 0 25 hm5C_associated_SNPs_108115 0 0 1 0 0 chromatin 0.500231643921467 0.50023164393694 0.0256462 3.09461345437967e-11 hm5C_site_61260 DeepMRMD:0.0256462;iRNA_m5C:3.09461345437967e-11 61261 chr2 69046383 69046383 1 + C A COAD 69046382 + 69046362 69046402 41 CCCAAGAAAGCTCCAGTGGCCCGAAGCTCTGTAGGCTGGGA CCCAAGAAAGCTCCAGTGGCCAGAAGCTCTGTAGGCTGGGA < 41bp 0.490248732797227 0.751267838470024 0.14171672 0.37799194 prediction 0.502535676940049 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046382 chr2:69046383 synonymous SNV . 0 22 hm5C_associated_SNPs_108116 0 0 0 0 1 chromatin 0.500231643921094 0.500231643921092 0 0 hm5C_site_61261 DeepMRMD:0;iRNA_m5C:0 61262 chr3 32931919 32931919 1 + T C ESCA 32931917 + 32931897 32931937 41 GTGGAGAAGCTGCGGCAAAACCTCAACAAGCTTGAGAGCAC GTGGAGAAGCTGCGGCAAAACCCCAACAAGCTTGAGAGCAC < 41bp 0.469756965560718 0.751265641494924 0.30447254 0.34823403 prediction 0.502531282989849 Functional Gain - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32931917 chr3:32931919 nonsynonymous SNV 0.871 5 23 hm5C_associated_SNPs_108117 0 0 0 0 1 cytosol 0.500231643981505 0.500231644055522 0 1.48032475166815e-10 hm5C_site_61262 DeepMRMD:0;iRNA_m5C:1.48032475166815e-10 61263 chr10 118354355 118354355 1 + C A LUAD 118354354 + 118354334 118354374 41 AGTGGTGGGCGCCCAGGTGGCCCAGATGCTCGACATCCTCT AGTGGTGGGCGCCCAGGTGGCACAGATGCTCGACATCCTCT < 41bp 0.525217928331643 0.776481633986449 0.58011484 0.6510457 prediction 0.502527411309613 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118354354 chr10:118354355 synonymous SNV . 0 22 hm5C_associated_SNPs_108118 0 0 0 0 1 unknown 0.500231643921919 0.500231643586241 0.14186172 0 hm5C_site_61263 DeepMRMD:0.14186172;iRNA_m5C:0 61264 chr12 133287459 133287459 1 + C A rs7486453 133287455 + 133287435 133287475 41 TGCGCGGGCCGGCGCGGGAGCAAGCGGCATGGCGTTCCGGC TGCGCGGGCCGGCGCGGGAGCAAGAGGCATGGCGTTCCGGC < 41bp 0.616687981357856 0.867951532417652 0.882639 0.90764034 prediction 0.502527102119592 Functional Gain - PGAM5 ENSG00000247077 UTR5 Human protein_coding chr12:133287455 chr12:133287459 . . 0 25 hm5C_associated_SNPs_108119 0 0 1 0 0 Cytosol 0.500231643918229 0.500231643134046 0.0500026800000002 0 hm5C_site_61264 DeepMRMD:0.0500026800000002;iRNA_m5C:0 61265 chr11 88911129 88911129 1 + T A LIHC 88911125 + 88911105 88911145 41 TGAGGACTAGAGGAAGAATGCTCCTGGCTGTTTTGTACTGC TGAGGACTAGAGGAAGAATGCTCCAGGCTGTTTTGTACTGC < 41bp 0.608788429897462 0.860049085714578 0.24831745 0.73366326 prediction 0.502521311634231 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:88911125 chr11:88911129 nonsynonymous SNV 0.966 2 25 hm5C_associated_SNPs_108120 0 0 0 0 0 unknown 0.500231645953648 0.500231644016902 0.46732652 0 hm5C_site_61265 DeepMRMD:0.46732652;iRNA_m5C:0 61266 chr12 4853790 4853790 1 + C A rs138133023 4853789 + 4853769 4853809 41 AGGAAAGGTCTTGCTCAAGCCCGCAACACTGGCTGGGAAGC AGGAAAGGTCTTGCTCAAGCCAGCAACACTGGCTGGGAAGC < 41bp 0.527701501988996 0.778962023198965 0.048005432 0.09767118 prediction 0.50252104241994 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4853789 chr12:4853790 nonsynonymous SNV 0.965 4 22 hm5C_associated_SNPs_108121 0 0 0 0 1 cytosol 0.500231643946907 0.500231643915008 0 0 hm5C_site_61266 DeepMRMD:0;iRNA_m5C:0 61267 chrX 27766653 27766653 1 + C A LUAD 27766649 + 27766629 27766669 41 CTGGACACCCACAGCTAAAGCTGCCACTGAGCTTACTGGGT CTGGACACCCACAGCTAAAGCTGCAACTGAGCTTACTGGGT < 41bp 0.334466624784652 0.751253427175063 0.077412605 0.09005934 prediction 0.502506854350127 Functional Gain - DCAF8L2 ENSG00000189186 CDS Human protein_coding chrX:27766649 chrX:27766653 synonymous SNV . 0 25 hm5C_associated_SNPs_108122 0 0 0 0 0 exosome 0.500231643921092 0.50023164375745 0 0 hm5C_site_61267 DeepMRMD:0;iRNA_m5C:0 61268 chr2 219754840 219754840 1 + C A rs116998555 219754836 + 219754816 219754856 41 CGGCGAGGGGACGAGGAGGCCTTCCGTAGGAAGCTGCACCG CGGCGAGGGGACGAGGAGGCCTTCAGTAGGAAGCTGCACCG < 41bp 0.327071580910397 0.751253390470816 0.72752494 0.79992604 prediction 0.502506780941631 Functional Gain - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219754836 chr2:219754840 nonsynonymous SNV 0.991 1 25 hm5C_associated_SNPs_108123 0 0 0 0 0 exosome 0.500231643921093 0.500231657571768 0.1448022 2.73013505136532e-08 hm5C_site_61268 DeepMRMD:0.1448022;iRNA_m5C:2.73013505136532e-08 61269 chr9 133967386 133967386 1 + T G rs114207313 133967384 + 133967364 133967404 41 GCGTACCCAGTTCACCTGGACATGAGTGCACACTCTCACCC GCGTACCCAGTTCACCTGGACAGGAGTGCACACTCTCACCC < 41bp 0.631452597616687 0.882703517778619 0.20037717 0.81972235 prediction 0.502501840323864 Functional Gain - LAMC3 ENSG00000050555 UTR3 Human protein_coding chr9:133967384 chr9:133967386 . . 0 23 hm5C_associated_SNPs_108124 0 0 0 0 0 chromatin 0.500206628255323 0.500226737122335 0.6394447 4.021773402485e-05 hm5C_site_61269 DeepMRMD:0.6394447;iRNA_m5C:4.021773402485e-05 61270 chr17 80685602 80685602 1 + C G rs57335410 80685598 + 80685578 80685618 41 TCCTGCATGATCCCTGGGCCCTCCCGCAGGCTGAGCAAGTC TCCTGCATGATCCCTGGGCCCTCCGGCAGGCTGAGCAAGTC < 41bp 0.487450769319675 0.751246052800109 0.00483498 0.0391784 prediction 0.502492105600219 Functional Gain - FN3KRP ENSG00000141560 UTR3 Human protein_coding chr17:80685598 chr17:80685602 . . 0 25 hm5C_associated_SNPs_108125 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921094 0 3.77475828372553e-15 hm5C_site_61270 DeepMRMD:0;iRNA_m5C:3.77475828372553e-15 61271 chr1 110042088 110042088 1 + C A rs7520465 110042084 + 110042064 110042104 41 CAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAG CAACCTCTGCCTCCCAGGTTCAAGAGATTCTCCTGCCTCAG < 41bp 0.438433797359549 0.751242119424379 0.48649535 0.5785742 prediction 0.502484238848758 Functional Gain - CYB561D1 ENSG00000174151 UTR3 Human protein_coding chr1:110042084 chr1:110042088 . . 0 25 hm5C_associated_SNPs_108126 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921091 0.1571484 0 hm5C_site_61271 DeepMRMD:0.1571484;iRNA_m5C:0 61272 chr13 20532865 20532865 1 + T A rs528228893 20532861 + 20532841 20532881 41 GGCCGCGCCGCCGCCTCCTCCGCCTCCTCCTCCTCACCAGC GGCCGCGCCGCCGCCTCCTCCGCCACCTCCTCCTCACCAGC < 41bp 0.478811801358238 0.751235074538419 0.45902896 0.81511843 prediction 0.502470149076839 Functional Gain - ZMYM2 ENSG00000121741 UTR5 Human protein_coding chr13:20532861 chr13:20532865 . . 0 25 hm5C_associated_SNPs_108127 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0.63023686 0 hm5C_site_61272 DeepMRMD:0.63023686;iRNA_m5C:0 61273 chr5 140503614 140503614 1 + C A LUAD 140503610 + 140503590 140503630 41 GCCTCTCCCTGAGGCGGCCCCGGCCCAGGCCCAGGCCGACT GCCTCTCCCTGAGGCGGCCCCGGCACAGGCCCAGGCCGACT < 41bp 0.663289796177756 0.914522324164275 0.7600002 0.7586798 prediction 0.50246505597304 Functional Gain - PCDHB4 ENSG00000081818 CDS Human protein_coding chr5:140503610 chr5:140503614 synonymous SNV . 0 25 hm5C_associated_SNPs_108128 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61273 DeepMRMD:0;iRNA_m5C:0 61274 chrX 89177261 89177261 1 + C A HNSC 89177260 + 89177240 89177280 41 GCGCAAGGGAAACTTGCCAGCCGAGTCCGTTAAGATCCTCC GCGCAAGGGAAACTTGCCAGCAGAGTCCGTTAAGATCCTCC < 41bp 0.508441432216372 0.759673115989464 0.3488445 0.7819457 prediction 0.502463367546183 Functional Gain - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177260 chrX:89177261 synonymous SNV . 0 22 hm5C_associated_SNPs_108129 0 0 0 0 0 exosome 0.5002316439211 0.500231643915817 0.5638914 0 hm5C_site_61274 DeepMRMD:0.5638914;iRNA_m5C:0 61275 chr11 124502023 124502023 1 + C A UCEC 124502019 + 124501999 124502039 41 CCTCCCAGAGCTTCAGCCTGCAGCCTTTGTGTCTTCTTACC CCTCCCAGAGCTTCAGCCTGCAGCATTTGTGTCTTCTTACC < 41bp 0.349763984587218 0.751223503411559 0.16550657 0.26132 prediction 0.502447006823118 Functional Gain - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124502019 chr11:124502023 synonymous SNV . 0 25 hm5C_associated_SNPs_108130 0 0 1 0 1 Ribosome 0.500231643921071 0.500231643921092 0 4.32986979603811e-14 hm5C_site_61275 DeepMRMD:0;iRNA_m5C:4.32986979603811e-14 61276 chr7 5336621 5336621 1 + C G LIHC 5336620 + 5336600 5336640 41 TCCTCACGAAGCTGCTGCTGCCCGACGAGCGCGCCAGCACG TCCTCACGAAGCTGCTGCTGCGCGACGAGCGCGCCAGCACG < 41bp 0.605354287608263 0.856577084807291 0.17243236 0.2779864 prediction 0.502445594398056 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5336620 chr7:5336621 nonsynonymous SNV 0.994 0 22 hm5C_associated_SNPs_108131 0 0 1 0 1 Endoplasmic reticulum 0.500231710973563 0.500240115537476 0 1.68091278263116e-05 hm5C_site_61276 DeepMRMD:0;iRNA_m5C:1.68091278263116e-05 61277 chr4 3495030 3495030 1 + C G rs16844467 3495029 + 3495009 3495049 41 GGACTCAGGCGGCCAGACGTCCGCCGGGTGTCCCTCTGGCT GGACTCAGGCGGCCAGACGTCGGCCGGGTGTCCCTCTGGCT < 41bp 0.443820140521098 0.751222767614657 0.17436439 0.3682626 prediction 0.502445535229314 Functional Gain - DOK7 ENSG00000175920 CDS Human protein_coding chr4:3495029 chr4:3495030 synonymous SNV . 0 22 hm5C_associated_SNPs_108132 0 0 0 0 0 nucleus 0.500231622507574 0.500231643921096 0 4.28270445773649e-08 hm5C_site_61277 DeepMRMD:0;iRNA_m5C:4.28270445773649e-08 61278 chr3 40429586 40429586 1 + C A rs78588637 40429582 + 40429562 40429602 41 TGACCCGCCAACCATGTGAGCAAGCAGGTTAGTATCTCTCA TGACCCGCCAACCATGTGAGCAAGAAGGTTAGTATCTCTCA < 41bp 0.347133262966763 0.751216022981977 0.26979268 0.35116878 prediction 0.502432045963954 Functional Gain - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40429582 chr3:40429586 nonsynonymous SNV 0.977 0 25 hm5C_associated_SNPs_108133 0 0 0 0 2 chromatin 0.500249920664295 0.499589930375088 0 0 hm5C_site_61278 DeepMRMD:0;iRNA_m5C:0 61279 chr10 135487200 135487200 1 + C A rs530058012 135487196 + 135487176 135487216 41 CACCTGCCGCAGTGCACAGTCCGGCTGAGGTGCACGGGAGC CACCTGCCGCAGTGCACAGTCCGGATGAGGTGCACGGGAGC < 41bp 0.446166610730099 0.75121594506119 0.8406751 0.8585252 prediction 0.502431890122381 Functional Gain - FRG2B;NONE ENSG00000258434 ncRNA_intronic Human other chr10:135487196 chr10:135487200 . . 0 25 hm5C_associated_SNPs_108134 0 0 0 0 0 unknown 0.500231634342542 0.500231604687453 0.0357002 0 hm5C_site_61279 DeepMRMD:0.0357002;iRNA_m5C:0 61280 chr6 34738120 34738120 1 + C T SKCM 34738119 + 34738099 34738139 41 ACCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGGCC ACCCCATATGGGGGGCCCTCCTATGATGCCAATGATGGGCC < 41bp 0.512370203089029 0.763581344205099 0.36790246 0.31085604 prediction 0.502422282232139 Functional Gain - SNRPC ENSG00000124562 CDS Human protein_coding chr6:34738119 chr6:34738120 synonymous SNV . 0 22 hm5C_associated_SNPs_108135 0 0 1 0 2 Ribosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_61280 DeepMRMD:0;iRNA_m5C:0 61281 chr10 95326706 95326706 1 + C A HNSC 95326705 + 95326685 95326725 41 CGCCGCGGCGCGACTGCCTGCCTGGTACTCAACCTCTTCTG CGCCGCGGCGCGACTGCCTGCATGGTACTCAACCTCTTCTG < 41bp 0.524200483962288 0.775403574810931 0.4415552 0.7825513 prediction 0.502406181697288 Functional Gain - FFAR4 ENSG00000186188 CDS Human protein_coding chr10:95326705 chr10:95326706 nonsynonymous SNV 0.890 2 22 hm5C_associated_SNPs_108136 0 0 0 0 0 cytosol 0.500231643921092 0.500231643921092 0.5651026 0 hm5C_site_61281 DeepMRMD:0.5651026;iRNA_m5C:0 61282 chr2 74781883 74781883 1 + T G UCEC 74781881 + 74781861 74781901 41 CGGAAGGAACCGCCGGGGGCCATGGACGGAGCAGTGATGGA CGGAAGGAACCGCCGGGGGCCAGGGACGGAGCAGTGATGGA < 41bp 0.407158951497456 0.751202100509775 0.70859283 0.8940549 prediction 0.50240420101955 Functional Gain - DOK1 ENSG00000115325 CDS Human protein_coding chr2:74781881 chr2:74781883 nonsynonymous SNV 0.998 4 23 hm5C_associated_SNPs_108137 0 0 0 0 1 Cytosol 0.500232332752624 0.500231643770977 0.37092414 0 hm5C_site_61282 DeepMRMD:0.37092414;iRNA_m5C:0 61283 chr11 94232280 94232280 1 + T G rs186824531 94232277 + 94232257 94232297 41 ACAGACCATTTTCAGGAAAGCAGTTAGCTAAGTGTTTAATT ACAGACCATTTTCAGGAAAGCAGGTAGCTAAGTGTTTAATT < 41bp 0.442304900769914 0.751198859161639 0.22202384 0.86353743 prediction 0.502397718323277 Functional Gain - ANKRD49 ENSG00000168876 UTR3 Human protein_coding chr11:94232277 chr11:94232280 . . 0 24 hm5C_associated_SNPs_108138 0 0 0 0 0 exosome 0.50023129410498 0.500231633595524 0.72707486 6.7898108868647e-07 hm5C_site_61283 DeepMRMD:0.72707486;iRNA_m5C:6.7898108868647e-07 61284 chr9 131271228 131271228 1 + C T COAD 131271227 + 131271207 131271247 41 GGGTGGTAGAGCACGTCCTACCCCATATGCAGGAGAACCAA GGGTGGTAGAGCACGTCCTACTCCATATGCAGGAGAACCAA < 41bp 0.543504851860343 0.794695212986437 0.08542925 0.9387675 prediction 0.502380722252188 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131271227 chr9:131271228 nonsynonymous SNV 0.058 1 22 hm5C_associated_SNPs_108139 0 0 0 0 1 Cytosol 0.500231643921092 0.500231643921092 0.877535 0 hm5C_site_61284 DeepMRMD:0.877535;iRNA_m5C:0 61285 chr14 23847994 23847994 1 + C A rs148470106 23847993 + 23847973 23848013 41 CCCGGGCTGGCATACTCCAGCCGCTGTCCCCTGGGTTCCAG CCCGGGCTGGCATACTCCAGCAGCTGTCCCCTGGGTTCCAG < 41bp 0.497386407827856 0.751189914523176 0.44200903 0.8931531 prediction 0.502379829046352 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23847993 chr14:23847994 synonymous SNV . 0 22 hm5C_associated_SNPs_108140 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.7863062 0 hm5C_site_61285 DeepMRMD:0.7863062;iRNA_m5C:0 61286 chr10 12203088 12203088 1 + T C STAD 12203086 + 12203066 12203106 41 ATGTGCATTCTTCTCTAAGACATGGATTGAAGTGTCTGGTT ATGTGCATTCTTCTCTAAGACACGGATTGAAGTGTCTGGTT < 41bp 0.481395416100621 0.75118672504939 0.01695028 0.010368466 prediction 0.502373450098781 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12203086 chr10:12203088 nonsynonymous SNV 0.999 4 23 hm5C_associated_SNPs_108141 0 0 1 2 1 Ribosome 0.500231643921085 0.500231643921081 0 0 hm5C_site_61286 DeepMRMD:0;iRNA_m5C:0 61287 chr16 67913992 67913992 1 + C T SKCM 67913991 + 67913971 67914011 41 CTGAGGAGCTGACCTTGAGCCCCAAGCTGCAGCTGGATGGC CTGAGGAGCTGACCTTGAGCCTCAAGCTGCAGCTGGATGGC < 41bp 0.52646603674782 0.777650057314265 0.0643616 0.14258888 prediction 0.502368041132889 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67913991 chr16:67913992 nonsynonymous SNV 0.983 3 22 hm5C_associated_SNPs_108142 0 0 1 0 1 Cytosol 0.500231643921188 0.500231643924344 0 6.31095176117924e-12 hm5C_site_61287 DeepMRMD:0;iRNA_m5C:6.31095176117924e-12 61288 chr1 21902329 21902329 1 + C A LUAD 21902328 + 21902308 21902348 41 GCAGGCAGGCAGCTTGACCTCCTCGGAAGACACTCTGACCG GCAGGCAGGCAGCTTGACCTCATCGGAAGACACTCTGACCG < 41bp 0.503160577650206 0.754343265474788 0.2522235 0.3370511 prediction 0.502365375649164 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21902328 chr1:21902329 synonymous SNV . 0 22 hm5C_associated_SNPs_108143 0 0 0 0 1 Endoplasmic reticulum 0.500231652935834 0.500231643956829 0 0 hm5C_site_61288 DeepMRMD:0;iRNA_m5C:0 61289 chr1 11561768 11561768 1 + C A LUAD 11561764 + 11561744 11561784 41 ACCAGCCCAGCATCCCGCCCCACGCGGCAGTCGCGGCCAAT ACCAGCCCAGCATCCCGCCCCACGAGGCAGTCGCGGCCAAT < 41bp 0.335613450550497 0.751182291909768 0.41181567 0.8508707 prediction 0.502364583819537 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11561764 chr1:11561768 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_108144 0 0 0 0 0 exosome 0.500231599511016 0.500229019030416 0.7017414 0 hm5C_site_61289 DeepMRMD:0.7017414;iRNA_m5C:0 61290 chr4 119951179 119951179 1 + C A UCEC 119951175 + 119951155 119951195 41 CTAGTTAGCTACGGTACTGGCGAGCTTGAGCGAGAGGCGGA CTAGTTAGCTACGGTACTGGCGAGATTGAGCGAGAGGCGGA < 41bp 0.376344488456936 0.751180320211014 0.5927489 0.8233997 prediction 0.502360640422028 Functional Gain - SYNPO2 ENSG00000172403 CDS Human protein_coding chr4:119951175 chr4:119951179 nonsynonymous SNV 0.344 4 25 hm5C_associated_SNPs_108145 0 0 0 0 0 Nucleus 0.500231643813253 0.500231643993343 0.4613016 3.60180552050338e-10 hm5C_site_61290 DeepMRMD:0.4613016;iRNA_m5C:3.60180552050338e-10 61291 chr17 41004801 41004801 1 + C T SKCM 41004800 + 41004780 41004820 41 GTGTGGGATACGGTCTTCCACCCCAGTGGGGCCATAGAAAT GTGTGGGATACGGTCTTCCACTCCAGTGGGGCCATAGAAAT < 41bp 0.513687586282289 0.764867735742833 0.046421766 0.9278176 prediction 0.502360298921087 Functional Gain - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41004800 chr17:41004801 nonsynonymous SNV 0.991 0 22 hm5C_associated_SNPs_108146 0 0 1 0 0 Cytosol 0.500231632866121 0.500231300015782 0.8556352 0 hm5C_site_61291 DeepMRMD:0.8556352;iRNA_m5C:0 61292 chr19 36357429 36357429 1 + C A UCEC 36357425 + 36357405 36357445 41 ATGGAAGAGTCCTGGGATCTCCAACTTGCCATAATGGATTG ATGGAAGAGTCCTGGGATCTCCAAATTGCCATAATGGATTG < 41bp 0.355182719087685 0.751179170706664 0.05449605 0.13475373 prediction 0.502358341413327 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36357425 chr19:36357429 nonsynonymous SNV 0.010 1 25 hm5C_associated_SNPs_108147 0 0 0 0 1 exosome 0.500231643921108 0.500231643921083 0 0 hm5C_site_61292 DeepMRMD:0;iRNA_m5C:0 61293 chr9 91963110 91963110 1 + C A THCA 91963109 + 91963089 91963129 41 TGGTGGTGATGACCAGTTTCCCGAGCAGGCAGAGCTGTCAG TGGTGGTGATGACCAGTTTCCAGAGCAGGCAGAGCTGTCAG < 41bp 0.522590638862703 0.773763553196328 0.48815513 0.9010569 prediction 0.50234582866725 Functional Gain - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91963109 chr9:91963110 synonymous SNV . 0 22 hm5C_associated_SNPs_108148 0 0 1 0 1 Cytosol 0.500231643921102 0.500231643921199 0.8021138 1.94289029309402e-13 hm5C_site_61293 DeepMRMD:0.8021138;iRNA_m5C:1.94289029309402e-13 61294 chr6 26452497 26452497 1 + C G LAML 26452496 + 26452476 26452516 41 CCCTGGAGACACCACTGACCCCGGGCTTAGCTAATGAAAGT CCCTGGAGACACCACTGACCCGGGGCTTAGCTAATGAAAGT < 41bp 0.59214770666677 0.843316564781979 0.35806063 0.9022672 prediction 0.502337716230417 Functional Gain - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26452496 chr6:26452497 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_108149 0 0 0 0 0 Endoplasmic reticulum 0.500231642836126 0.500231643921037 0.8045344 2.16982276590727e-09 hm5C_site_61294 DeepMRMD:0.8045344;iRNA_m5C:2.16982276590727e-09 61295 chr9 138395500 138395500 1 + C T COAD 138395499 + 138395479 138395519 41 TTCACCGCCCACATGGCCTACCGCAAGGGCATCATCTTGTT TTCACCGCCCACATGGCCTACTGCAAGGGCATCATCTTGTT < 41bp 0.51201794089714 0.763181172724374 0.01837939 0.09944907 prediction 0.502326463654468 Functional Gain - MRPS2 ENSG00000122140 CDS Human protein_coding chr9:138395499 chr9:138395500 nonsynonymous SNV 0.957 4 22 hm5C_associated_SNPs_108150 0 0 1 0 0 Cytosol 0.500231700086633 0.500231643921117 0 0 hm5C_site_61295 DeepMRMD:0;iRNA_m5C:0 61296 chr19 4950704 4950704 1 + C A ACC 4950700 + 4950680 4950720 41 GGACTGGCGGTCGGGGAAGCCGGTCAGGGTGGTGCGCAATG GGACTGGCGGTCGGGGAAGCCGGTAAGGGTGGTGCGCAATG < 41bp 0.337761916607573 0.751162576060568 0.8607297 0.8896453 prediction 0.502325152121136 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950700 chr19:4950704 . . 0 25 hm5C_associated_SNPs_108151 0 0 0 0 2 chromatin 0.500231643918225 0.500231643909623 0.0578311999999999 0 hm5C_site_61296 DeepMRMD:0.0578311999999999;iRNA_m5C:0 61297 chr16 89784192 89784192 1 + C G rs534653422 89784188 + 89784168 89784208 41 AATCTTGGAGCGCCAGAGCTCAGCCGAGCTCACCGGCTCCC AATCTTGGAGCGCCAGAGCTCAGCGGAGCTCACCGGCTCCC < 41bp 0.580298839390915 0.831458478105321 0.7538034 0.9079946 prediction 0.502319277428812 Functional Gain - VPS9D1-AS1 ENSG00000261373 ncRNA_exonic Human antisense chr16:89784188 chr16:89784192 . . 0 25 hm5C_associated_SNPs_108152 0 0 1 0 0 unknown 0.500231643921114 0.500231643921141 0.3083824 5.52891066263328e-14 hm5C_site_61297 DeepMRMD:0.3083824;iRNA_m5C:5.52891066263328e-14 61298 chr1 112998647 112998647 1 + T A STAD 112998643 + 112998623 112998663 41 AGGAGCGCTCCCGCCACAAGCAGCTCTCATCCATGCTAGTG AGGAGCGCTCCCGCCACAAGCAGCACTCATCCATGCTAGTG < 41bp 0.43376170010152 0.751159268315402 0.4813768 0.73947537 prediction 0.502318536630804 Functional Gain - CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112998643 chr1:112998647 nonsynonymous SNV 0.953 4 25 hm5C_associated_SNPs_108153 0 0 0 0 1 Ribosome 0.500231725802084 0.500231706930762 0.47895074 0 hm5C_site_61298 DeepMRMD:0.47895074;iRNA_m5C:0 61299 chr22 31829985 31829985 1 + C G rs374964620 31829981 + 31829961 31830001 41 CTTTCCCTTTTCCCATCTGCCGGACGAACCACAACAGCGTT CTTTCCCTTTTCCCATCTGCCGGAGGAACCACAACAGCGTT < 41bp 0.585445349466149 0.836602385899172 0.60506994 0.92156506 prediction 0.502314072866046 Functional Gain - DRG1 ENSG00000185721 UTR3 Human protein_coding chr22:31829981 chr22:31829985 . . 0 25 hm5C_associated_SNPs_108154 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.63299024 0 hm5C_site_61299 DeepMRMD:0.63299024;iRNA_m5C:0 61300 chr4 56236098 56236098 1 + T C SKCM 56236096 + 56236076 56236116 41 GAGCTGATGATCTACGTTTCCATGGCCGTCACCTTTGGGTT GAGCTGATGATCTACGTTTCCACGGCCGTCACCTTTGGGTT < 41bp 0.538903294217767 0.790059025970018 0.61193985 0.5515719 prediction 0.502311463504501 Functional Gain - SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56236096 chr4:56236098 nonsynonymous SNV 0.849 2 23 hm5C_associated_SNPs_108155 0 0 1 0 1 Ribosome 0.500231642436611 0.500231412284761 0 0 hm5C_site_61300 DeepMRMD:0;iRNA_m5C:0 61301 chr3 130290136 130290136 1 + T G LIHC 130290134 + 130290114 130290154 41 AATCCCGTGGAGCTGTTAGCCATGGCAGGATCAAGCGACAA AATCCCGTGGAGCTGTTAGCCAGGGCAGGATCAAGCGACAA < 41bp 0.400929661865727 0.751155666542723 0.2726846 0.8837575 prediction 0.502311333085447 Functional Gain - COL6A6 ENSG00000206384 CDS Human protein_coding chr3:130290134 chr3:130290136 nonsynonymous SNV 0.234 3 23 hm5C_associated_SNPs_108156 0 0 0 0 0 exosome 0.500231643921093 0.500231643921092 0.767515 0 hm5C_site_61301 DeepMRMD:0.767515;iRNA_m5C:0 61302 chr7 47805539 47805539 1 + T A rs75131981 47805535 + 47805515 47805555 41 TGTCACAGCTAAAGCAATGGCCAGTGTCAGTGTATTTGCAC TGTCACAGCTAAAGCAATGGCCAGAGTCAGTGTATTTGCAC < 41bp 0.482924551436042 0.751140233318373 0.03138125 0.332932 prediction 0.502280466636746 Functional Gain - LINC00525 ENSG00000146666 ncRNA_exonic Human antisense chr7:47805535 chr7:47805539 . . 0 25 hm5C_associated_SNPs_108157 0 0 0 4 0 unknown 0.500231708609101 0.500232390099794 0 1.36298138775359e-06 hm5C_site_61302 DeepMRMD:0;iRNA_m5C:1.36298138775359e-06 61303 chr1 172414292 172414292 1 + C A UCEC 172414291 + 172414271 172414311 41 AGCCATTAGTGCTCAGCCTTCCCAGAAGGTAACCTCTCAGC AGCCATTAGTGCTCAGCCTTCACAGAAGGTAACCTCTCAGC < 41bp 0.491019016736335 0.751139427914066 0.2480261 0.4376635 prediction 0.502278855828131 Functional Gain - C1orf105 ENSG00000180999 CDS Human protein_coding chr1:172414291 chr1:172414292 nonsynonymous SNV 0.926 3 22 hm5C_associated_SNPs_108158 0 0 0 0 2 chromatin 0.500231643925694 0.500231643921092 0 0 hm5C_site_61303 DeepMRMD:0;iRNA_m5C:0 61304 chr22 35948709 35948709 1 + T A rs552877901 35948705 + 35948685 35948725 41 CCCACCACTTAGACCACGCCCACCTCCTGACCGCGTTCCTC CCCACCACTTAGACCACGCCCACCACCTGACCGCGTTCCTC < 41bp 0.425735693745604 0.751136626681655 0.096826404 0.0409877 prediction 0.502273253363309 Functional Gain - RASD2 ENSG00000100302 UTR3 Human protein_coding chr22:35948705 chr22:35948709 . . 0 25 hm5C_associated_SNPs_108159 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61304 DeepMRMD:0;iRNA_m5C:0 61305 chr16 31500071 31500071 1 + C A LUAD 31500070 + 31500050 31500090 41 CTGCGGCCACGCGCCGGCGACCGCGAGCTGCTGCTGGTGGG CTGCGGCCACGCGCCGGCGACAGCGAGCTGCTGCTGGTGGG < 41bp 0.49905762390337 0.751133486222325 0.2321012 0.4414056 prediction 0.502266972444649 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500070 chr16:31500071 nonsynonymous SNV 0.235 2 22 hm5C_associated_SNPs_108160 0 0 0 0 1 exosome 0.500231623346043 0.500231647889696 0 4.9087306219775e-08 hm5C_site_61305 DeepMRMD:0;iRNA_m5C:4.9087306219775e-08 61306 chr20 37634873 37634873 1 + C A UCS 37634872 + 37634852 37634892 41 GACTGTGGCTTTGTGAAACTCCGAGCCTACAATCCCAGGAC GACTGTGGCTTTGTGAAACTCAGAGCCTACAATCCCAGGAC < 41bp 0.518518543555846 0.769646698273495 0.33501843 0.654546 prediction 0.502256309435298 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37634872 chr20:37634873 synonymous SNV . 0 22 hm5C_associated_SNPs_108161 0 0 1 0 1 Endoplasmic reticulum 0.500231643921078 0.500231643921092 0.309092 2.88657986402541e-14 hm5C_site_61306 DeepMRMD:0.309092;iRNA_m5C:2.88657986402541e-14 61307 chr5 161580318 161580318 1 + C T SKCM 161580317 + 161580297 161580337 41 TCCTATGCTCGGATCTTCTTCCCCACTGCCTTCTGCCTGTT TCCTATGCTCGGATCTTCTTCTCCACTGCCTTCTGCCTGTT < 41bp 0.530089794087322 0.781212627838755 0.14196053 0.92358124 prediction 0.502245667502867 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161580317 chr5:161580318 nonsynonymous SNV 0.983 5 22 hm5C_associated_SNPs_108162 0 0 0 0 0 exosome 0.500231643921095 0.500231648423583 0.84716248 9.00497587608129e-09 hm5C_site_61307 DeepMRMD:0.84716248;iRNA_m5C:9.00497587608129e-09 61308 chr17 78196524 78196524 1 + T G KIRC 78196521 + 78196501 78196541 41 GGGCACCTCCCGGGATGTGACTCTGGGCCCCACCGCCATTA GGGCACCTCCCGGGATGTGACTCGGGGCCCCACCGCCATTA < 41bp 0.665900945631264 0.917022754572155 0.29332185 0.7878685 prediction 0.502243617881781 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78196521 chr17:78196524 nonsynonymous SNV 0.994 4 24 hm5C_associated_SNPs_108163 0 0 1 0 1 chromatin 0.500231643922848 0.500231649478995 0.575737 1.11122930857022e-08 hm5C_site_61308 DeepMRMD:0.575737;iRNA_m5C:1.11122930857022e-08 61309 chr7 123269064 123269064 1 + C A UCEC 123269060 + 123269040 123269080 41 GTTTTGATGTCAACACTCTACTTGCTGACCACATTTCCCAG GTTTTGATGTCAACACTCTACTTGATGACCACATTTCCCAG < 41bp 0.327919260791323 0.751101778553693 0.04254225 0.061413318 prediction 0.502203557107386 Functional Gain - ASB15 ENSG00000146809 CDS Human protein_coding chr7:123269060 chr7:123269064 nonsynonymous SNV 0.694 1 25 hm5C_associated_SNPs_108164 0 0 0 0 0 exosome 0.500231641777935 0.500231618444756 0 0 hm5C_site_61309 DeepMRMD:0;iRNA_m5C:0 61310 chr8 105360934 105360934 1 + T A LUSC 105360930 + 105360910 105360950 41 GTGGGCCTCCTGTCTGTGGCCGCCTGCTGGTTTCTGCCATC GTGGGCCTCCTGTCTGTGGCCGCCAGCTGGTTTCTGCCATC < 41bp 0.610351836854215 0.861445059521762 0.29019165 0.6900857 prediction 0.502186445335093 Functional Gain - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105360930 chr8:105360934 nonsynonymous SNV 0.100 0 25 hm5C_associated_SNPs_108165 0 0 0 0 0 exosome 0.500269618021835 0.500239124458781 0.3801714 0 hm5C_site_61310 DeepMRMD:0.3801714;iRNA_m5C:0 61311 chr2 112725805 112725805 1 + C T LUSC 112725804 + 112725784 112725824 41 TCCTGGTTTTGATGGATACTCCCCGTTCAGGAATTGCAGCA TCCTGGTTTTGATGGATACTCTCCGTTCAGGAATTGCAGCA < 41bp 0.496738492451931 0.751092637932912 0.044419795 0.082007945 prediction 0.502185275865825 Functional Gain - MERTK ENSG00000153208 CDS Human protein_coding chr2:112725804 chr2:112725805 synonymous SNV . 0 22 hm5C_associated_SNPs_108166 0 0 1 0 2 Endoplasmic reticulum 0.500231643921092 0.500231643921089 0 0 hm5C_site_61311 DeepMRMD:0;iRNA_m5C:0 61312 chr16 67006828 67006828 1 + C A LIHC 67006827 + 67006807 67006847 41 AACAATATCTGGAGATCAACCCAGTGCCACGGGCCGGACAG AACAATATCTGGAGATCAACCAAGTGCCACGGGCCGGACAG < 41bp 0.491242123855116 0.751088297037781 0.7090554 0.73248154 prediction 0.502176594075562 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:67006827 chr16:67006828 nonsynonymous SNV 0.000 1 22 hm5C_associated_SNPs_108167 0 0 1 0 1 nucleolus 0.500231643785979 0.500231643921162 0.04685228 2.70365507759607e-10 hm5C_site_61312 DeepMRMD:0.04685228;iRNA_m5C:2.70365507759607e-10 61313 chrX 150349702 150349702 1 + C A UCEC 150349698 + 150349678 150349718 41 CTCCCATTGCCCCGAGATCCCTGCCATTGCCCACCCTGTGT CTCCCATTGCCCCGAGATCCCTGCAATTGCCCACCCTGTGT < 41bp 0.669687473344236 0.920774524694625 0.1740376 0.35003722 prediction 0.502174102700778 Functional Gain - GPR50 ENSG00000102195 CDS Human protein_coding chrX:150349698 chrX:150349702 synonymous SNV . 0 25 hm5C_associated_SNPs_108168 0 0 0 0 0 exosome 0.500231643904168 0.50023161803496 0 0 hm5C_site_61313 DeepMRMD:0;iRNA_m5C:0 61314 chr4 159568032 159568032 1 + T G UCEC 159568029 + 159568009 159568049 41 AATACAATAAGCATGCGCAGCTGTGGATGGAGAGTACTCAT AATACAATAAGCATGCGCAGCTGGGGATGGAGAGTACTCAT < 41bp 0.386393263227359 0.75108263625302 0.03321746 0.22737366 prediction 0.50216527250604 Functional Gain - RXFP1 ENSG00000171509 CDS Human protein_coding chr4:159568029 chr4:159568032 nonsynonymous SNV 1.000 4 24 hm5C_associated_SNPs_108169 0 0 0 0 1 exosome 0.500233675352858 0.500231631145608 0 0 hm5C_site_61314 DeepMRMD:0;iRNA_m5C:0 61315 chr20 306756 306756 1 + C G PRAD 306755 + 306735 306775 41 GGAAGATCATGGACCAGTGGCCCGACATGCACAACGCCGAG GGAAGATCATGGACCAGTGGCGCGACATGCACAACGCCGAG < 41bp 0.603213986512809 0.854287694939839 0.28958714 0.41215235 prediction 0.50214741685406 Functional Gain - SOX12 ENSG00000177732 CDS Human protein_coding chr20:306755 chr20:306756 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_108170 0 0 1 0 0 Ribosome 0.500231644238223 0.50023165564495 0 2.28134546809144e-08 hm5C_site_61315 DeepMRMD:0;iRNA_m5C:2.28134546809144e-08 61316 chr2 5833205 5833205 1 + T A LUAD 5833201 + 5833181 5833221 41 ATGGCCGACTACCCCGACTACAAGTACCGGCCCCGGAAAAA ATGGCCGACTACCCCGACTACAAGAACCGGCCCCGGAAAAA < 41bp 0.604190173220319 0.855256996852694 0.21790373 0.2602573 prediction 0.50213364726475 Functional Gain - SOX11 ENSG00000176887 CDS Human protein_coding chr2:5833201 chr2:5833205 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_108171 0 0 0 0 0 exosome 0.500231643921075 0.500231643920791 0 0 hm5C_site_61316 DeepMRMD:0;iRNA_m5C:0 61317 chr6 7568069 7568069 1 + T C COAD 7568067 + 7568047 7568087 41 CTGAAGGGGCTCCAGGACTCCATCAGGAAGAAGTACCCCTG CTGAAGGGGCTCCAGGACTCCACCAGGAAGAAGTACCCCTG < 41bp 0.459577732043814 0.751064204888022 0.1008732 0.19276878 prediction 0.502128409776044 Functional Gain - DSP ENSG00000096696 CDS Human protein_coding chr6:7568067 chr6:7568069 nonsynonymous SNV 0.998 3 23 hm5C_associated_SNPs_108172 0 0 1 0 2 Nucleus 0.500209794877129 0.500231185908213 0 4.27820621669017e-05 hm5C_site_61317 DeepMRMD:0;iRNA_m5C:4.27820621669017e-05 61318 chr11 61490364 61490364 1 + T C UCEC 61490362 + 61490342 61490382 41 ATCGAGTTCATCTACGCCATCGTGGGCATCGTCTGGCTCAC ATCGAGTTCATCTACGCCATCGCGGGCATCGTCTGGCTCAC < 41bp 0.513118330459479 0.764173562328336 0.8274336 0.7623782 prediction 0.502110463737714 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61490362 chr11:61490364 nonsynonymous SNV 1.000 3 23 hm5C_associated_SNPs_108173 0 0 0 0 2 Endoplasmic reticulum 0.500231643952797 0.500231643915541 0 0 hm5C_site_61318 DeepMRMD:0;iRNA_m5C:0 61319 chr22 41527608 41527608 1 + C T SKCM 41527607 + 41527587 41527627 41 ATCAGCAGCCTGGGCAGTCTCCCCAAGGCATGCGGCCCATG ATCAGCAGCCTGGGCAGTCTCTCCAAGGCATGCGGCCCATG < 41bp 0.556308713559396 0.807358868168791 0.09594473 0.9616643 prediction 0.502100309218791 Functional Gain - EP300 ENSG00000100393 CDS Human protein_coding chr22:41527607 chr22:41527608 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_108174 0 0 1 0 1 Cytosol 0.500231643921093 0.500231645448802 0.9233286 3.0554181407183e-09 hm5C_site_61319 DeepMRMD:0.9233286;iRNA_m5C:3.0554181407183e-09 61320 chr19 50909490 50909490 1 + C A UCEC 50909489 + 50909469 50909509 41 GCCGGCCTTTGCTCCAACATCCGGGACTCTTCATTCCAGTC GCCGGCCTTTGCTCCAACATCAGGGACTCTTCATTCCAGTC < 41bp 0.486255332012095 0.751047706039604 0.35304207 0.871279 prediction 0.502095412079208 Functional Gain - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50909489 chr19:50909490 synonymous SNV . 0 22 hm5C_associated_SNPs_108175 0 0 1 0 2 Nucleus 0.500231643935632 0.500231645104713 0.742558 2.33816122019448e-09 hm5C_site_61320 DeepMRMD:0.742558;iRNA_m5C:2.33816122019448e-09 61321 chr20 56285316 56285316 1 + C A rs575637685 56285312 + 56285292 56285332 41 GGTCAGCTTGGAACGCCTGCCCGGCGCACGCCCGGGGCCGG GGTCAGCTTGGAACGCCTGCCCGGAGCACGCCCGGGGCCGG < 41bp 0.620649283633534 0.871695393728441 0.8321842 0.8905549 prediction 0.502092220189814 Functional Gain - NKILA ENSG00000124225 intronic Human protein_coding chr20:56285312 chr20:56285316 . . 0 25 hm5C_associated_SNPs_108176 0 0 0 0 0 unknown 0.500231634977614 0.500231578307113 0.1167414 0 hm5C_site_61321 DeepMRMD:0.1167414;iRNA_m5C:0 61322 chr19 41889820 41889820 1 + C G rs536286607 41889816 + 41889796 41889836 41 ACTGTGAACCCTGAGGCCGGCAGCCCAGCAAATCTGTGGGC ACTGTGAACCCTGAGGCCGGCAGCGCAGCAAATCTGTGGGC < 41bp 0.511167604281199 0.762201752026532 0.5749143 0.5694078 prediction 0.502068295490667 Functional Gain - TMEM91 ENSG00000142046 UTR3 Human protein_coding chr19:41889816 chr19:41889820 . . 0 25 hm5C_associated_SNPs_108177 0 0 1 0 3 chromatin 0.500231643921092 0.500231643921093 0 4.44089209850063e-16 hm5C_site_61322 DeepMRMD:0;iRNA_m5C:4.44089209850063e-16 61323 chr6 28251702 28251702 1 + C T SKCM 28251701 + 28251681 28251721 41 AACTCACAGGAGGGCAGCTCCCACACTCAGGAGATTTGCCG AACTCACAGGAGGGCAGCTCCTACACTCAGGAGATTTGCCG < 41bp 0.507125554216424 0.758150576477261 0.44888362 0.90774655 prediction 0.502050044521674 Functional Gain - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28251701 chr6:28251702 nonsynonymous SNV 0.002 1 22 hm5C_associated_SNPs_108178 0 0 0 0 0 nucleoplasm 0.500231643921092 0.500231643921092 0.8154931 0 hm5C_site_61323 DeepMRMD:0.8154931;iRNA_m5C:0 61324 chr3 113342323 113342323 1 + C A COAD 113342319 + 113342299 113342339 41 CCCAGGGACTTTGCTTCCTACATGCTGGGCATCTTCATCTG CCCAGGGACTTTGCTTCCTACATGATGGGCATCTTCATCTG < 41bp 0.329995099886155 0.751008964134587 0.13222721 0.18638274 prediction 0.502017928269174 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113342319 chr3:113342323 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_108179 0 0 0 0 2 exosome 0.500231643921104 0.500231643921093 0 0 hm5C_site_61324 DeepMRMD:0;iRNA_m5C:0 61325 chr15 80452205 80452205 1 + C A rs567587933 80452204 + 80452184 80452224 41 AGCCAGGCTCAGAGATGACACCGAACTTCGGAAGTGGTGAG AGCCAGGCTCAGAGATGACACAGAACTTCGGAAGTGGTGAG < 41bp 0.525695733695002 0.776702907510804 0.07088953 0.16526556 prediction 0.502014347631603 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80452204 chr15:80452205 synonymous SNV . 0 22 hm5C_associated_SNPs_108180 0 0 0 0 1 Cytosol 0.500231643879518 0.500156305353896 0 0 hm5C_site_61325 DeepMRMD:0;iRNA_m5C:0 61326 chr1 150477121 150477121 1 + C A UCEC 150477120 + 150477100 150477140 41 CTTTCAAGGCAGGCGGGTGCCCTGGAGCGTCCAGTCCTCAT CTTTCAAGGCAGGCGGGTGCCATGGAGCGTCCAGTCCTCAT < 41bp 0.508800686449449 0.759800853028357 0.14909351 0.38106713 prediction 0.502000333157817 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477120 chr1:150477121 nonsynonymous SNV 0.186 0 22 hm5C_associated_SNPs_108181 0 0 1 0 2 Ribosome 0.500231643963429 0.500231642719071 0 0 hm5C_site_61326 DeepMRMD:0;iRNA_m5C:0 61327 chr16 30770515 30770515 1 + C G UCEC 30770511 + 30770491 30770531 41 TCCCTTACCCGTCTCACTCTCTGGCCACAGTTTGGGTGGCT TCCCTTACCCGTCTCACTCTCTGGGCACAGTTTGGGTGGCT < 41bp 0.465085887990556 0.75099521444525 0.84587944 0.9233123 prediction 0.501990428890499 Functional Gain - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30770511 chr16:30770515 nonsynonymous SNV 0.920 2 25 hm5C_associated_SNPs_108182 0 0 1 0 0 chromatin 0.500231833132229 0.500231643921098 0.15486572 0 hm5C_site_61327 DeepMRMD:0.15486572;iRNA_m5C:0 61328 chr11 67658465 67658465 1 + C G rs187023268 67658464 + 67658444 67658484 41 CAAACCTGTTAACCCACAGGCCGGAGAGAGAGAGAAGTCAG CAAACCTGTTAACCCACAGGCGGGAGAGAGAGAGAAGTCAG < 41bp 0.468707141399385 0.750993034712793 0.17858529 0.78628606 prediction 0.501986069425586 Functional Gain - FAM86C2P;UNC93B1 ENSG00000251637 ncRNA_exonic Human lincRNA chr11:67658464 chr11:67658465 . . 0 22 hm5C_associated_SNPs_108183 0 0 0 0 0 unknown 0.500231643919833 0.500231643921093 0.57257212 2.51909604287448e-12 hm5C_site_61328 DeepMRMD:0.57257212;iRNA_m5C:2.51909604287448e-12 61329 chr10 124402861 124402861 1 + C G rs576815460 124402860 + 124402840 124402880 41 CAGGAAAAGGTGGACGTCGTCCTGGGTCCCATCCAGCTGCA CAGGAAAAGGTGGACGTCGTCGTGGGTCCCATCCAGCTGCA < 41bp 0.462829156145289 0.750984337745257 0.63510656 0.89780635 prediction 0.501968675490514 Functional Gain - DMBT1 ENSG00000187908 CDS Human protein_coding chr10:124402860 chr10:124402861 nonsynonymous SNV 0.981 0 22 hm5C_associated_SNPs_108184 0 0 0 0 0 exosome 0.500231643846616 0.500231643891199 0.52539958 8.91668960889547e-11 hm5C_site_61329 DeepMRMD:0.52539958;iRNA_m5C:8.91668960889547e-11 61330 chr2 26407195 26407195 1 + C A UCEC 26407194 + 26407174 26407214 41 CTTATGGGCCAGGCGGAGATCCTGTGCGCCAAGACCACCAA CTTATGGGCCAGGCGGAGATCATGTGCGCCAAGACCACCAA < 41bp 0.514656727907919 0.765633564152754 0.22939223 0.73329026 prediction 0.50195367248967 Functional Gain - GAREM2 ENSG00000157833 CDS Human protein_coding chr2:26407194 chr2:26407195 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_108185 0 0 0 0 1 Exosome 0.500231643957505 0.5002323436516 0.46658052 1.39938819088137e-06 hm5C_site_61330 DeepMRMD:0.46658052;iRNA_m5C:1.39938819088137e-06 61331 chr2 86718161 86718161 1 + C A THCA 86718160 + 86718140 86718180 41 TTGGGGATGTGGTGTTTATCCCGGCAGGAGCTCCACATCAG TTGGGGATGTGGTGTTTATCCAGGCAGGAGCTCCACATCAG < 41bp 0.508107527343586 0.759081719654195 0.91075385 0.91371894 prediction 0.501948384621217 Functional Gain - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86718160 chr2:86718161 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_108186 0 0 1 0 0 chromatin 0.500231644035461 0.500231647762617 0.00593018000000001 7.45431183446499e-09 hm5C_site_61331 DeepMRMD:0.00593018000000001;iRNA_m5C:7.45431183446499e-09 61332 chr17 38172768 38172768 1 + C G LUSC 38172764 + 38172744 38172784 41 TGCTTGAGCCAACTCCATAGCGGCCTTTTCCTCTACCAGGG TGCTTGAGCCAACTCCATAGCGGCGTTTTCCTCTACCAGGG < 41bp 0.595333828237579 0.84630644859609 0.8814182 0.96082604 prediction 0.501945240717022 Functional Gain - CSF3 ENSG00000108342 CDS Human protein_coding chr17:38172764 chr17:38172768 nonsynonymous SNV 0.089 3 25 hm5C_associated_SNPs_108187 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.15881568 0 hm5C_site_61332 DeepMRMD:0.15881568;iRNA_m5C:0 61333 chrX 129059059 129059059 1 + C G BLCA 129059055 + 129059035 129059075 41 CAGAGAGGACCCCAAATAATCGCCCTGATGCCCCTAAGGAG CAGAGAGGACCCCAAATAATCGCCGTGATGCCCCTAAGGAG < 41bp 0.580688530288824 0.831659572186022 0.7121699 0.6943137 prediction 0.501942083794396 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129059055 chrX:129059059 nonsynonymous SNV 0.014 0 25 hm5C_associated_SNPs_108188 0 0 1 0 0 Cytosol 0.500231643920381 0.500231648382903 0 8.92504381511117e-09 hm5C_site_61333 DeepMRMD:0;iRNA_m5C:8.92504381511117e-09 61334 chr6 42141362 42141362 1 + T C COAD 42141360 + 42141340 42141380 41 AAGGCCTGAGCAATGGGCAACGTGATGGAGGGAAAGTCAGT AAGGCCTGAGCAATGGGCAACGCGATGGAGGGAAAGTCAGT < 41bp 0.486220065516648 0.750969896300001 0.21600825 0.1432882 prediction 0.501939792600002 Functional Gain - GUCA1A ENSG00000048545 CDS Human protein_coding chr6:42141360 chr6:42141362 nonsynonymous SNV 0.162 0 23 hm5C_associated_SNPs_108189 0 0 0 0 0 Cytosol 0.500231643921096 0.500231643921548 0 9.03499497439952e-13 hm5C_site_61334 DeepMRMD:0;iRNA_m5C:9.03499497439952e-13 61335 chr17 56345247 56345247 1 + C G LUSC 56345246 + 56345226 56345266 41 CTGTGACAACACCCGCATCACCAAGGTCCCACGGGACCCAT CTGTGACAACACCCGCATCACGAAGGTCCCACGGGACCCAT < 41bp 0.437863813304057 0.750967282276988 0.18527275 0.7824851 prediction 0.501934564553976 Functional Gain - LPO ENSG00000167419 CDS Human protein_coding chr17:56345246 chr17:56345247 synonymous SNV . 0 22 hm5C_associated_SNPs_108190 0 0 0 0 1 cytosol 0.500266880908762 0.500277352033044 0.5649702 2.09422485624167e-05 hm5C_site_61335 DeepMRMD:0.5649702;iRNA_m5C:2.09422485624167e-05 61336 chr19 56544077 56544077 1 + C T SKCM 56544076 + 56544056 56544096 41 CTGGACCTGGGCAGCAGCATCCTGACAGAGCGGGCCATGAA CTGGACCTGGGCAGCAGCATCTTGACAGAGCGGGCCATGAA < 41bp 0.503961057497084 0.754925785188577 0.12479484 0.2050465 prediction 0.501929455382985 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56544076 chr19:56544077 synonymous SNV . 0 22 hm5C_associated_SNPs_108191 0 0 0 0 1 unknown 0.500157174777484 0.500231593110976 0 0.00014883666698351 hm5C_site_61336 DeepMRMD:0;iRNA_m5C:0.00014883666698351 61337 chr7 142749605 142749605 1 + C G LUAD 142749601 + 142749581 142749621 41 AGCTGACACCCACCTACATACACCCATGTACTTCTTCCTGG AGCTGACACCCACCTACATACACCGATGTACTTCTTCCTGG < 41bp 0.461098087759777 0.750957185688751 0.001311779 0.011840314 prediction 0.501914371377502 Functional Gain - OR6V1 ENSG00000225781 CDS Human protein_coding chr7:142749601 chr7:142749605 synonymous SNV . 0 25 hm5C_associated_SNPs_108192 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_61337 DeepMRMD:0;iRNA_m5C:0 61338 chr11 66291309 66291309 1 + C T STAD 66291308 + 66291288 66291328 41 GGGCTGGCCAATGGAGAGGTCCGCATTTATCGTGACAAGGC GGGCTGGCCAATGGAGAGGTCTGCATTTATCGTGACAAGGC < 41bp 0.516599313485905 0.767550023266095 0.113235176 0.2078737 prediction 0.50190141956038 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66291308 chr11:66291309 nonsynonymous SNV 0.989 2 22 hm5C_associated_SNPs_108193 0 0 0 0 1 membrane 0.500231643921089 0.50023164391563 0 0 hm5C_site_61338 DeepMRMD:0;iRNA_m5C:0 61339 chr19 18305894 18305894 1 + C A THCA 18305893 + 18305873 18305913 41 TACCTGTCCTACTTGAAGTACCGGGTGAGTGTGGAGGGCAT TACCTGTCCTACTTGAAGTACAGGGTGAGTGTGGAGGGCAT < 41bp 0.521684434466455 0.772624123200879 0.5309118 0.36753553 prediction 0.501879377468847 Functional Gain - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18305893 chr19:18305894 synonymous SNV . 0 22 hm5C_associated_SNPs_108194 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61339 DeepMRMD:0;iRNA_m5C:0 61340 chr13 24242166 24242166 1 + C T rs35041805 24242165 + 24242145 24242185 41 TGCTGTGAGGAGGCCTGCAGCCCCAACCCGGCGACTCTTGG TGCTGTGAGGAGGCCTGCAGCTCCAACCCGGCGACTCTTGG < 41bp 0.556806286822923 0.807745253854486 0.35927376 0.9129635 prediction 0.501877934063126 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24242165 chr13:24242166 nonsynonymous SNV 0.003 0 22 hm5C_associated_SNPs_108195 0 0 1 0 2 cytosol 0.500231643849938 0.500231643921124 0.825927 1.42371003875041e-10 hm5C_site_61340 DeepMRMD:0.825927;iRNA_m5C:1.42371003875041e-10 61341 chr19 55177320 55177320 1 + T A SKCM 55177316 + 55177296 55177336 41 GGGTCTTGGTGGTCTCCATCCTGCTTCTCTCCCTCCTCCTC GGGTCTTGGTGGTCTCCATCCTGCATCTCTCCCTCCTCCTC < 41bp 0.62407086056986 0.875009566636075 0.07007429 0.07745752 prediction 0.50187741213243 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177316 chr19:55177320 nonsynonymous SNV 0.062 2 25 hm5C_associated_SNPs_108196 0 0 0 0 2 exosome 0.500232952166063 0.500238770652756 0 1.16369733864641e-05 hm5C_site_61341 DeepMRMD:0;iRNA_m5C:1.16369733864641e-05 61342 chr22 37964344 37964344 1 + C T LUAD 37964343 + 37964323 37964363 41 TCCAGCCCCCGCTGCAAACCCCCCAGCCCCTACTGCAAACC TCCAGCCCCCGCTGCAAACCCTCCAGCCCCTACTGCAAACC < 41bp 0.512343328233051 0.763281783015539 0.13355139 0.9405483 prediction 0.501876909564974 Functional Gain - CDC42EP1 ENSG00000128283 CDS Human protein_coding chr22:37964343 chr22:37964344 synonymous SNV . 0 22 hm5C_associated_SNPs_108197 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.8810966 0 hm5C_site_61342 DeepMRMD:0.8810966;iRNA_m5C:0 61343 chr1 183200165 183200165 1 + C A rs62640907 183200164 + 183200144 183200184 41 ATGGCACCTGTGTTTGCAAGCCAGGATTTGGTGGCCCCAAC ATGGCACCTGTGTTTGCAAGCAAGGATTTGGTGGCCCCAAC < 41bp 0.491004682358054 0.750936838299488 0.5405312 0.7736535 prediction 0.501873676598976 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183200164 chr1:183200165 nonsynonymous SNV 1.000 0 22 hm5C_associated_SNPs_108198 0 0 0 0 2 exosome 0.500231643923789 0.500231643921093 0.4662446 0 hm5C_site_61343 DeepMRMD:0.4662446;iRNA_m5C:0 61344 chr19 35760579 35760579 1 + C T UCEC 35760578 + 35760558 35760598 41 CACAACATCCAGTACCAGTTCCGCACAGAGACAAATGGAGG CACAACATCCAGTACCAGTTCTGCACAGAGACAAATGGAGG < 41bp 0.502293882428547 0.753228220270909 0.23133183 0.38687956 prediction 0.501868675684723 Functional Gain - USF2 ENSG00000105698 CDS Human protein_coding chr19:35760578 chr19:35760579 nonsynonymous SNV 0.995 4 22 hm5C_associated_SNPs_108199 0 0 1 0 1 Cytosol 0.500231643922739 0.500231646308237 0 4.77099515450163e-09 hm5C_site_61344 DeepMRMD:0;iRNA_m5C:4.77099515450163e-09 61345 chr12 32137852 32137852 1 + C G rs3759297 32137851 + 32137831 32137871 41 TGAACAAGCTTCTCAGGAAACCCGACAGAAGAAACATGTAA TGAACAAGCTTCTCAGGAAACGCGACAGAAGAAACATGTAA < 41bp 0.511790087550656 0.762719596916423 0.13793012 0.12561762 prediction 0.501859018731534 Functional Gain - KIAA1551 ENSG00000174718 CDS Human protein_coding chr12:32137851 chr12:32137852 synonymous SNV . 0 22 hm5C_associated_SNPs_108200 0 0 1 0 0 Cytosol 0.500231644075886 0.500231735482627 0 1.82813482130229e-07 hm5C_site_61345 DeepMRMD:0;iRNA_m5C:1.82813482130229e-07 61346 chr22 29445697 29445697 1 + C T SKCM 29445696 + 29445676 29445716 41 GGCAGTGGCAGCCTGCTCTTCCCCACCGTGGTGCACGTGGC GGCAGTGGCAGCCTGCTCTTCTCCACCGTGGTGCACGTGGC < 41bp 0.53103478607722 0.781963426713022 0.17372894 0.95231897 prediction 0.501857281271605 Functional Gain - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29445696 chr22:29445697 nonsynonymous SNV 0.907 2 22 hm5C_associated_SNPs_108201 0 0 1 0 0 Ribosome 0.5002316439221 0.500231645465752 0.90463794 3.08730441211935e-09 hm5C_site_61346 DeepMRMD:0.90463794;iRNA_m5C:3.08730441211935e-09 61347 chr1 159778983 159778983 1 + T C rs12083967 159778981 + 159778961 159779001 41 TTTACTGGTGTGAGGTGGCCCCTGAGGGTGGCCAGGTCCAG TTTACTGGTGTGAGGTGGCCCCCGAGGGTGGCCAGGTCCAG < 41bp 0.492312695294798 0.750928395803216 0.3434574 0.38269943 prediction 0.501856791606432 Functional Gain - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159778981 chr1:159778983 synonymous SNV . 0 23 hm5C_associated_SNPs_108202 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61347 DeepMRMD:0;iRNA_m5C:0 61348 chr10 115340448 115340448 1 + C G PCPG 115340447 + 115340427 115340467 41 GATGTCTCAGCCTGCTCAGCCCAGGGTAAAGGCCATGGCTG GATGTCTCAGCCTGCTCAGCCGAGGGTAAAGGCCATGGCTG < 41bp 0.60174196104447 0.852669088529026 0.37545714 0.8860787 prediction 0.501854254969113 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115340447 chr10:115340448 nonsynonymous SNV 0.272 0 22 hm5C_associated_SNPs_108203 0 0 0 0 1 exosome 0.500230533261584 0.500231485466032 0.7721574 1.90440889591414e-06 hm5C_site_61348 DeepMRMD:0.7721574;iRNA_m5C:1.90440889591414e-06 61349 chr3 9757025 9757025 1 + C T LUSC 9757024 + 9757004 9757044 41 TACCGGGAGCTGAGCAAGGCCCAGAACCAGTTCACAGTATA TACCGGGAGCTGAGCAAGGCCTAGAACCAGTTCACAGTATA < 41bp 0.519151955683728 0.770078550307779 0.40843248 0.38199857 prediction 0.501853189248102 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9757024 chr3:9757025 stopgain 1.000 1 22 hm5C_associated_SNPs_108204 0 0 0 0 2 exosome 0.500231612638484 0.500231634909033 0 4.45410976990246e-08 hm5C_site_61349 DeepMRMD:0;iRNA_m5C:4.45410976990246e-08 61350 chr2 27245168 27245168 1 + C A UCEC 27245164 + 27245144 27245184 41 ATGCTTGCATGGGTCAACGACTCCCTGCACCTCAACTATAC ATGCTTGCATGGGTCAACGACTCCATGCACCTCAACTATAC < 41bp 0.307448566613866 0.750924588545823 0.27043417 0.9642017 prediction 0.501849177091646 Functional Gain - MAPRE3 ENSG00000084764 CDS Human protein_coding chr2:27245164 chr2:27245168 nonsynonymous SNV 0.998 5 25 hm5C_associated_SNPs_108205 0 0 1 0 2 Cytosol 0.500231643921092 0.500231561080421 0.9284034 0 hm5C_site_61350 DeepMRMD:0.9284034;iRNA_m5C:0 61351 chr4 48993541 48993541 1 + C T SKCM 48993540 + 48993520 48993560 41 TCTTGCGCTTGGGGTGTCTTCCTCACTGATAGTGCAAGCTG TCTTGCGCTTGGGGTGTCTTCTTCACTGATAGTGCAAGCTG < 41bp 0.493335279433027 0.750920471784307 0.19491497 0.16957721 prediction 0.501840943568614 Functional Gain - CWH43 ENSG00000109182 CDS Human protein_coding chr4:48993540 chr4:48993541 synonymous SNV . 0 22 hm5C_associated_SNPs_108206 0 0 0 0 2 unknown 0.500231646829648 0.500231644303924 0 0 hm5C_site_61351 DeepMRMD:0;iRNA_m5C:0 61352 chr18 77929265 77929265 1 + C G rs114992248 77929264 + 77929244 77929284 41 CATCCAGGCCCCATCCCTCCCCGAATTCACGGGCAGCCAGC CATCCAGGCCCCATCCCTCCCGGAATTCACGGGCAGCCAGC < 41bp 0.59562064169655 0.846540266743637 0.30012298 0.8803866 prediction 0.501839250094174 Functional Gain - PARD6G-AS1 ENSG00000267270 UTR3 Human antisense chr18:77929264 chr18:77929265 . . 0 22 hm5C_associated_SNPs_108207 0 0 0 0 0 unknown 0.500231643921093 0.500231643921379 0.7607732 5.73097125311506e-13 hm5C_site_61352 DeepMRMD:0.7607732;iRNA_m5C:5.73097125311506e-13 Metabolic traits 61353 chr4 81967791 81967791 1 + C T SKCM 81967790 + 81967770 81967810 41 TGCTCTGGAGCATGCCAGTTCCCCATGCCAAAGGTAGCCAT TGCTCTGGAGCATGCCAGTTCTCCATGCCAAAGGTAGCCAT < 41bp 0.528584348040452 0.779501262879171 0.22896266 0.9399431 prediction 0.501833829677439 Functional Gain - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81967790 chr4:81967791 nonsynonymous SNV 0.999 3 22 hm5C_associated_SNPs_108208 0 0 0 0 1 Nucleus 0.500231643922878 0.500231643915786 0.8798862 0 hm5C_site_61353 DeepMRMD:0.8798862;iRNA_m5C:0 61354 chr5 41904484 41904484 1 + C G HNSC 41904480 + 41904460 41904500 41 GATTGTGGCCATGGCGGCCGCAGTCTCTAGTGTGGTGAGAC GATTGTGGCCATGGCGGCCGCAGTGTCTAGTGTGGTGAGAC < 41bp 0.487368940417863 0.750909746141356 0.41860843 0.41141564 prediction 0.501819492282712 Functional Gain - C5orf51 ENSG00000205765 CDS Human protein_coding chr5:41904480 chr5:41904484 synonymous SNV . 0 25 hm5C_associated_SNPs_108209 0 0 1 0 1 chromatin 0.500235656489732 0.500245736993915 0 2.01610083658821e-05 hm5C_site_61354 DeepMRMD:0;iRNA_m5C:2.01610083658821e-05 61355 chr1 155058678 155058678 1 + C A UCEC 155058674 + 155058654 155058694 41 GGCCCCAATGTGAAGATCAACGTGCTGGGTGAGTCTGCGCA GGCCCCAATGTGAAGATCAACGTGATGGGTGAGTCTGCGCA < 41bp 0.351614134123252 0.750905574409466 0.11532572 0.27239984 prediction 0.501811148818931 Functional Gain - EFNA3 ENSG00000143590;ENSG00000251246 CDS Human other chr1:155058674 chr1:155058678 nonsynonymous SNV 0.997 3 25 hm5C_associated_SNPs_108210 0 0 0 0 2 chromatin 0.500231643984991 0.500231643922779 0 0 hm5C_site_61355 DeepMRMD:0;iRNA_m5C:0 61356 chr2 176982041 176982041 1 + C A LUAD 176982040 + 176982020 176982060 41 ACTGAGTCAGACCTACGCCACCGGGAAAACCCAAGAGTACA ACTGAGTCAGACCTACGCCACAGGGAAAACCCAAGAGTACA < 41bp 0.511242994636863 0.762148152878116 0.3863699 0.8095014 prediction 0.501810316482505 Functional Gain - HOXD10 ENSG00000128710 CDS Human protein_coding chr2:176982040 chr2:176982041 synonymous SNV . 0 22 hm5C_associated_SNPs_108211 0 0 1 0 0 exosome 0.500231649100639 0.500231632004086 0.6190028 0 hm5C_site_61356 DeepMRMD:0.6190028;iRNA_m5C:0 61357 chr1 29639170 29639170 1 + T C STAD 29639168 + 29639148 29639188 41 CTGCTGGCTTTCATCCGGCGCGTGAAGGCCTCCACCCCACC CTGCTGGCTTTCATCCGGCGCGCGAAGGCCTCCACCCCACC < 41bp 0.501569763795089 0.752474487828565 0.28872293 0.25624257 prediction 0.501809448066952 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29639168 chr1:29639170 nonsynonymous SNV 0.993 4 23 hm5C_associated_SNPs_108212 0 0 0 0 1 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_61357 DeepMRMD:0;iRNA_m5C:0 61358 chr2 102849516 102849516 1 + C T SKCM 102849515 + 102849495 102849535 41 CCCTGGTGTTGAATATCCTGCCCGAGGTGTTGGAGAGACAA CCCTGGTGTTGAATATCCTGCTCGAGGTGTTGGAGAGACAA < 41bp 0.490339489229928 0.750902440282237 0.045484245 0.07137188 prediction 0.501804880564473 Functional Gain - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102849515 chr2:102849516 nonsynonymous SNV 0.883 4 22 hm5C_associated_SNPs_108213 0 0 0 0 2 exosome 0.500231643921092 0.500231642828973 0 0 hm5C_site_61358 DeepMRMD:0;iRNA_m5C:0 61359 chr3 52457190 52457190 1 + T A COAD 52457186 + 52457166 52457206 41 GAACATTTCTGCAGAGACAACACCTTGGAAGAGAATCCGGG GAACATTTCTGCAGAGACAACACCATGGAAGAGAATCCGGG < 41bp 0.42422756293223 0.750899252769261 0.095752865 0.17679235 prediction 0.501798505538521 Functional Gain - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52457186 chr3:52457190 nonsynonymous SNV 0.589 2 25 hm5C_associated_SNPs_108214 0 0 0 0 1 cytosol 0.500231643428044 0.500231607466482 0 0 hm5C_site_61359 DeepMRMD:0;iRNA_m5C:0 61360 chr5 140720516 140720516 1 + C G rs35592458 140720512 + 140720492 140720532 41 CCCCCTCTCTCCGCCACTGTCACGCTCACCGTGGCCGTGGC CCCCCTCTCTCCGCCACTGTCACGGTCACCGTGGCCGTGGC < 41bp 0.464666853946309 0.750897364430538 0.5162575 0.89467585 prediction 0.501794728861075 Functional Gain - PCDHGA2 ENSG00000081853 CDS Human protein_coding chr5:140720512 chr5:140720516 nonsynonymous SNV 0.002 0 25 hm5C_associated_SNPs_108215 0 0 0 0 0 exosome 0.500231640003372 0.500231643921133 0.7568367 7.83552267513699e-09 hm5C_site_61360 DeepMRMD:0.7568367;iRNA_m5C:7.83552267513699e-09 61361 chr16 19127325 19127325 1 + C A OV 19127321 + 19127301 19127341 41 TCTCCGGGCCTACGGGGGTCCCCGCTACCTTGCCAGGTGCC TCTCCGGGCCTACGGGGGTCCCCGATACCTTGCCAGGTGCC < 41bp 0.358905351538605 0.750893788220366 0.17556006 0.35290706 prediction 0.501787576440732 Functional Gain - ITPRIPL2 ENSG00000205730 CDS Human protein_coding chr16:19127321 chr16:19127325 synonymous SNV . 0 25 hm5C_associated_SNPs_108216 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61361 DeepMRMD:0;iRNA_m5C:0 61362 chr11 557618 557618 1 + A T LUSC 557622 - 557602 557642 41 AGGTAGTGACGGCAGAGACTCTGATGGACCCAAGCGACCTC AGGTAGTGACGGCAGAGACTCTGAAGGACCCAAGCGACCTC < 41bp 0.603916616199473 0.854808098148638 0.24247298 0.22851193 prediction 0.501782963898328 Functional Gain - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:557622 chr11:557618 nonsynonymous SNV 0.020 0 25 hm5C_associated_SNPs_108217 0 0 0 0 2 chromatin 0.500231643920347 0.500231643352561 0 0 hm5C_site_61362 DeepMRMD:0;iRNA_m5C:0 61363 chr19 19334875 19334875 1 + C A COAD 19334871 + 19334851 19334891 41 CAGCCCGGGACCGCTATGCACTGACCTTCGCTGAGGCCCAG CAGCCCGGGACCGCTATGCACTGAACTTCGCTGAGGCCCAG < 41bp 0.331516861658242 0.750891144533491 0.09491098 0.0817301 prediction 0.501782289066981 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19334871 chr19:19334875 nonsynonymous SNV 0.898 2 25 hm5C_associated_SNPs_108218 0 0 0 0 1 exosome 0.500231643092155 0.500231643919814 0 1.65531766072036e-09 hm5C_site_61363 DeepMRMD:0;iRNA_m5C:1.65531766072036e-09 61364 chr2 131520178 131520178 1 + C G rs77687733 131520174 + 131520154 131520194 41 AGACTGAGGACTTGGCCTCGCTGGCGGCCGAGGGGAAAAGC AGACTGAGGACTTGGCCTCGCTGGGGGCCGAGGGGAAAAGC < 41bp 0.59540167410409 0.84629227218857 0.6751046 0.8811581 prediction 0.50178119616896 Functional Gain - AMER3 ENSG00000178171 CDS Human protein_coding chr2:131520174 chr2:131520178 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_108219 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921093 0.412107 1.55431223447522e-15 hm5C_site_61364 DeepMRMD:0.412107;iRNA_m5C:1.55431223447522e-15 61365 chr2 108626830 108626830 1 + C T SKCM 108626829 + 108626809 108626849 41 TTGTTTACATCGTTATCTTCCCCCAGCTGCTTTGTGTACTC TTGTTTACATCGTTATCTTCCTCCAGCTGCTTTGTGTACTC < 41bp 0.523009201363475 0.773896257395283 0.013327599 0.8865158 prediction 0.501774112063616 Functional Gain - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108626829 chr2:108626830 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_108220 0 0 0 0 0 unknown 0.500231644953095 0.500231788401748 0.7730316 2.86897305690204e-07 hm5C_site_61365 DeepMRMD:0.7730316;iRNA_m5C:2.86897305690204e-07 61366 chr2 71190710 71190710 1 + C A CESC 71190706 + 71190686 71190726 41 GTGAGTTTTCTTGTAGATATCACCCACCCTATCCCAGACTT GTGAGTTTTCTTGTAGATATCACCAACCCTATCCCAGACTT < 41bp 0.329370177572911 0.75088204345478 0.024761826 0.081115514 prediction 0.501764086909559 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71190706 chr2:71190710 nonsynonymous SNV 0.991 4 25 hm5C_associated_SNPs_108221 0 0 0 0 2 Endoplasmic reticulum 0.500231643921138 0.500231643550043 0 0 hm5C_site_61366 DeepMRMD:0;iRNA_m5C:0 61367 chr9 100840602 100840602 1 + T C STAD 100840600 + 100840580 100840620 41 CCAGCGCATACCCGCTCCAGCCTGAGGACGTCAACCTGCGG CCAGCGCATACCCGCTCCAGCCCGAGGACGTCAACCTGCGG < 41bp 0.505587423839005 0.756462547667408 0.4247873 0.3900537 prediction 0.501750247656804 Functional Gain - NANS ENSG00000095380 CDS Human protein_coding chr9:100840600 chr9:100840602 synonymous SNV . 0 23 hm5C_associated_SNPs_108222 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643920866 0 0 hm5C_site_61367 DeepMRMD:0;iRNA_m5C:0 61368 chr15 41865552 41865552 1 + C A THCA 41865551 + 41865531 41865571 41 GTGGCTGACTTCGGACTCTCCCGGAAGATCTACAGTGGGGA GTGGCTGACTTCGGACTCTCCAGGAAGATCTACAGTGGGGA < 41bp 0.522870669112915 0.773743478221528 0.81363213 0.49050623 prediction 0.501745618217225 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865551 chr15:41865552 synonymous SNV . 0 22 hm5C_associated_SNPs_108223 0 0 1 0 1 Ribosome 0.500231643921095 0.500231643921092 0 0 hm5C_site_61368 DeepMRMD:0;iRNA_m5C:0 61369 chr8 6699329 6699329 1 + C G rs116743361 6699325 + 6699305 6699345 41 CTAGAGTGATGGTTATTTGGCAGACAGCATGCCCCGCCTGG CTAGAGTGATGGTTATTTGGCAGAGAGCATGCCCCGCCTGG < 41bp 0.585497258893694 0.836367965751463 0.18146333 0.7345644 prediction 0.501741413715539 Functional Gain - GS1-24F4.2 ENSG00000245857 ncRNA_exonic Human lincRNA chr8:6699325 chr8:6699329 . . 0 25 hm5C_associated_SNPs_108224 0 0 0 0 0 unknown 0.500231643921093 0.500231643921092 0.4691288 0 hm5C_site_61369 DeepMRMD:0.4691288;iRNA_m5C:0 61370 chr19 40480725 40480725 1 + T C BLCA 40480723 + 40480703 40480743 41 TGTTGGCAAAGGCGGTGGCACATCACACAACAGGTGAGCCC TGTTGGCAAAGGCGGTGGCACACCACACAACAGGTGAGCCC < 41bp 0.55100673707177 0.801877369285554 0.89509046 0.85010976 prediction 0.501741264427568 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480723 chr19:40480725 synonymous SNV . 0 23 hm5C_associated_SNPs_108225 0 0 1 0 2 Ribosome 0.500231648363244 0.500231644850404 0 0 hm5C_site_61370 DeepMRMD:0;iRNA_m5C:0 61371 chr7 143079980 143079980 1 + C G THYM 143079976 + 143079956 143079996 41 GCCTGCAGCCGGGGGCACAGCACCCCTGCCTCCTTGGAAGT GCCTGCAGCCGGGGGCACAGCACCGCTGCCTCCTTGGAAGT < 41bp 0.454708631376005 0.75084019734746 0.17501462 0.20439881 prediction 0.50168039469492 Functional Gain - ZYX ENSG00000159840 CDS Human protein_coding chr7:143079976 chr7:143079980 synonymous SNV . 0 25 hm5C_associated_SNPs_108226 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61371 DeepMRMD:0;iRNA_m5C:0 61372 chr16 57610696 57610696 1 + C G rs542194850 57610692 + 57610672 57610712 41 ACTTTCGCTCTTGGGGGCTGCACCCCAGACATAGCTGGCAC ACTTTCGCTCTTGGGGGCTGCACCGCAGACATAGCTGGCAC < 41bp 0.540282839200234 0.79112132860611 0.32879168 0.3344084 prediction 0.501676978811752 Functional Gain - ADGRG5 ENSG00000159618 UTR3 Human protein_coding chr16:57610692 chr16:57610696 . . 0 25 hm5C_associated_SNPs_108227 0 0 0 0 0 Ribosome 0.500231645824374 0.500231154213412 0 0 hm5C_site_61372 DeepMRMD:0;iRNA_m5C:0 61373 chr6 29275181 29275181 1 + T A LUAD 29275177 + 29275157 29275197 41 GGCCGGACCAAGGTCTTCTCCACCTGCCTACCACACCTATT GGCCGGACCAAGGTCTTCTCCACCAGCCTACCACACCTATT < 41bp 0.436176138888014 0.750834965856239 0.14333367 0.1285043 prediction 0.501669931712479 Functional Gain - OR14J1 ENSG00000204695 CDS Human protein_coding chr6:29275177 chr6:29275181 nonsynonymous SNV 0.615 4 25 hm5C_associated_SNPs_108228 0 0 0 0 0 unknown 0.500231643921091 0.50023164392108 0 0 hm5C_site_61373 DeepMRMD:0;iRNA_m5C:0 61374 chr19 15852507 15852507 1 + T A LGG 15852503 + 15852483 15852523 41 CCTTTGTGGCTTGTGCCATTCAGATGTTCTTCTCCTTCATG CCTTTGTGGCTTGTGCCATTCAGAAGTTCTTCTCCTTCATG < 41bp 0.573554376911232 0.824387781243292 0.3252625 0.4333776 prediction 0.501666808664121 Functional Gain - OR10H3 ENSG00000171936 CDS Human protein_coding chr19:15852503 chr19:15852507 nonsynonymous SNV 0.926 2 25 hm5C_associated_SNPs_108229 0 0 0 0 0 unknown 0.500217111759629 0.500231643920183 0 2.90643211067199e-05 hm5C_site_61374 DeepMRMD:0;iRNA_m5C:2.90643211067199e-05 61375 chr7 44146316 44146316 1 + C T COAD 44146315 + 44146295 44146335 41 CACCTAAGGCCACCAAGAAGCCCAAGGAGAAGCCACCCAAG CACCTAAGGCCACCAAGAAGCTCAAGGAGAAGCCACCCAAG < 41bp 0.491884888111935 0.750819251568717 0.18870655 0.23499626 prediction 0.501638503137433 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44146315 chr7:44146316 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108230 0 0 0 0 0 Endoplasmic reticulum 0.500231643921092 0.500231643921092 0 0 hm5C_site_61375 DeepMRMD:0;iRNA_m5C:0 61376 chr1 248551426 248551426 1 + C A LUAD 248551425 + 248551405 248551445 41 CTCCCGTTCTGTGCCTCTCACCAAATCAATCACTTTTTCTG CTCCCGTTCTGTGCCTCTCACAAAATCAATCACTTTTTCTG < 41bp 0.522035366889703 0.772849454131751 0.3651681 0.4988652 prediction 0.501628174484097 Functional Gain - OR2T6 ENSG00000198104 CDS Human protein_coding chr1:248551425 chr1:248551426 nonsynonymous SNV 0.049 0 22 hm5C_associated_SNPs_108231 0 0 0 0 0 unknown 0.500231613415911 0.500231643662941 0 6.04940602055848e-08 hm5C_site_61376 DeepMRMD:0;iRNA_m5C:6.04940602055848e-08 61377 chr20 44638688 44638688 1 + C G COAD 44638687 + 44638667 44638707 41 GTCCCAGACCTGGGCAGATTCCAAACCTTTGAGGGCGACCT GTCCCAGACCTGGGCAGATTCGAAACCTTTGAGGGCGACCT < 41bp 0.43554661727507 0.750812306844396 0.45404047 0.7908945 prediction 0.501624613688791 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44638687 chr20:44638688 nonsynonymous SNV 0.633 1 22 hm5C_associated_SNPs_108232 0 0 0 0 1 Endoplasmic reticulum 0.500231614433311 0.500231643921092 0.581789 5.89755624336163e-08 hm5C_site_61377 DeepMRMD:0.581789;iRNA_m5C:5.89755624336163e-08 61378 chr1 78001598 78001598 1 + C T SKCM 78001597 + 78001577 78001617 41 ACCATGACCAACCGCCTTCTCCAAAGGAGCCGGAGCAGCCT ACCATGACCAACCGCCTTCTCTAAAGGAGCCGGAGCAGCCT < 41bp 0.523181905837478 0.773982207399178 0.5353167 0.36392182 prediction 0.501600603123399 Functional Gain - AK5 ENSG00000154027 CDS Human protein_coding chr1:78001597 chr1:78001598 stopgain 0.625 0 22 hm5C_associated_SNPs_108233 0 0 0 0 1 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_61378 DeepMRMD:0;iRNA_m5C:0 61379 chr12 53453445 53453445 1 + C A UCEC 53453444 + 53453424 53453464 41 GGCTACCGCGCCCCAGGCTACCGGGAGGTGGTCATCCTGGA GGCTACCGCGCCCCAGGCTACAGGGAGGTGGTCATCCTGGA < 41bp 0.51708237024162 0.767879639439648 0.9099536 0.880939 prediction 0.501594538396056 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53453444 chr12:53453445 synonymous SNV . 0 22 hm5C_associated_SNPs_108234 0 0 1 0 0 cytosol 0.500231643921535 0.500231643921093 0 0 hm5C_site_61379 DeepMRMD:0;iRNA_m5C:0 61380 chr1 203452366 203452366 1 + C T LUSC 203452365 + 203452345 203452385 41 TCTCATCTTGGCCTCAGTGGCCCAAGGCCAGCCAACAAGAC TCTCATCTTGGCCTCAGTGGCTCAAGGCCAGCCAACAAGAC < 41bp 0.509283938268663 0.760079239336297 0.22295257 0.60089254 prediction 0.501590602135268 Functional Gain - PRELP ENSG00000188783 CDS Human protein_coding chr1:203452365 chr1:203452366 synonymous SNV . 0 22 hm5C_associated_SNPs_108235 0 0 0 0 1 exosome 0.500231646009576 0.500231644933306 0.20178508 0 hm5C_site_61380 DeepMRMD:0.20178508;iRNA_m5C:0 61381 chr1 158813136 158813136 1 + T G SARC 158813134 + 158813114 158813154 41 TAAACCAGGAAGAAGTGGGTCTTGCGGCACCTGCACCCACC TAAACCAGGAAGAAGTGGGTCTGGCGGCACCTGCACCCACC < 41bp 0.422442964533842 0.750786496100796 0.32168624 0.7569472 prediction 0.501572992201591 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813134 chr1:158813136 synonymous SNV . 0 23 hm5C_associated_SNPs_108236 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.5138944 0 hm5C_site_61381 DeepMRMD:0.5138944;iRNA_m5C:0 61382 chr19 11024627 11024627 1 + C A GBM 11024626 + 11024606 11024646 41 GGTGGAGGAGGTGTCACTCCCCGAGCAGGTGGACATCATCA GGTGGAGGAGGTGTCACTCCCAGAGCAGGTGGACATCATCA < 41bp 0.502249302822852 0.753031377152167 0.4704883 0.89210826 prediction 0.50156414865863 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11024626 chr19:11024627 synonymous SNV . 0 22 hm5C_associated_SNPs_108237 0 0 1 0 1 Ribosome 0.500231644678167 0.500231643920704 0.78421652 0 hm5C_site_61382 DeepMRMD:0.78421652;iRNA_m5C:0 61383 chr11 4470939 4470939 1 + C A rs11032296 4470938 + 4470918 4470958 41 CTGCTGGCCATGGCCTTTGACCGCTATGTGGCTATCTGCAA CTGCTGGCCATGGCCTTTGACAGCTATGTGGCTATCTGCAA < 41bp 0.514249224924051 0.765028860046796 0.024862677 0.20119229 prediction 0.501559270245489 Functional Gain - OR52K2 ENSG00000181963 CDS Human protein_coding chr11:4470938 chr11:4470939 nonsynonymous SNV 0.498 1 22 hm5C_associated_SNPs_108238 0 0 0 0 0 exosome 0.500231644127349 0.500231646563092 0 4.87148543726335e-09 hm5C_site_61383 DeepMRMD:0;iRNA_m5C:4.87148543726335e-09 61384 chr1 99470042 99470042 1 + G C STAD 99470043 - 99470023 99470063 41 GGGCCCGGAGGACAGCAGCGCCGTGCCCCCCGTGCTCCTCT GGGCCCGGAGGACAGCAGCGCGGTGCCCCCCGTGCTCCTCT < 41bp 0.457994022542562 0.750775317003328 0.35246533 0.7099215 prediction 0.501550634006655 Functional Gain - PLPPR5 ENSG00000117598 CDS Human protein_coding chr1:99470043 chr1:99470042 synonymous SNV . 0 22 hm5C_associated_SNPs_108239 0 0 0 0 1 unknown 0.500231643921092 0.500231643921092 0.419843 0 hm5C_site_61384 DeepMRMD:0.419843;iRNA_m5C:0 61385 chr16 25175976 25175976 1 + C T GBM 25175975 + 25175955 25175995 41 TTACATGACTCCAGAGCAGTCCGCAAACCTCCTGAAGTGGG TTACATGACTCCAGAGCAGTCTGCAAACCTCCTGAAGTGGG < 41bp 0.532287254827956 0.783060346175935 0.25627106 0.45353723 prediction 0.501546182695957 Functional Gain - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25175975 chr16:25175976 synonymous SNV . 0 22 hm5C_associated_SNPs_108240 0 0 0 0 2 Cytosol 0.500231643919565 0.500231643921058 0 2.98450153479735e-12 hm5C_site_61385 DeepMRMD:0;iRNA_m5C:2.98450153479735e-12 61386 chr1 171761229 171761229 1 + C T SKCM 171761228 + 171761208 171761248 41 TCTTTGTCCACGATCATTTTCCAAAGTCCTGCATTGATGCT TCTTTGTCCACGATCATTTTCTAAAGTCCTGCATTGATGCT < 41bp 0.497725230696186 0.750765921041122 0.8925916 0.25262746 prediction 0.501531842082243 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171761228 chr1:171761229 nonsynonymous SNV 0.894 1 22 hm5C_associated_SNPs_108241 0 0 1 0 1 Ribosome 0.500231842779176 0.500231672326433 0 0 hm5C_site_61386 DeepMRMD:0;iRNA_m5C:0 61387 chr7 143018575 143018575 1 + C T SKCM 143018574 + 143018554 143018594 41 TCTTCTGCCACCTCATCTCTCCCCAGGCTGTTGGTGAGAAC TCTTCTGCCACCTCATCTCTCTCCAGGCTGTTGGTGAGAAC < 41bp 0.5490652176741 0.799826435811229 0.26732716 0.92709875 prediction 0.501522436274258 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143018574 chr7:143018575 nonsynonymous SNV 0.998 5 22 hm5C_associated_SNPs_108242 0 0 0 1 1 exosome 0.500231643921092 0.500231643921092 0.8541975 0 hm5C_site_61387 DeepMRMD:0.8541975;iRNA_m5C:0 61388 chr3 127396057 127396057 1 + C T SARC 127396056 + 127396036 127396076 41 GAAGGTGCTGACCATCGAGCCCCCACCTGCAGACCCCCGCC GAAGGTGCTGACCATCGAGCCTCCACCTGCAGACCCCCGCC < 41bp 0.535823144260355 0.786576351632654 0.096200675 0.9340291 prediction 0.501506414744597 Functional Gain - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396056 chr3:127396057 synonymous SNV . 0 22 hm5C_associated_SNPs_108243 0 0 1 0 2 exosome 0.500233823297229 0.500243528519868 0.8680582 1.94104452784227e-05 hm5C_site_61388 DeepMRMD:0.8680582;iRNA_m5C:1.94104452784227e-05 61389 chr19 3730080 3730080 1 + C T SKCM 3730079 + 3730059 3730099 41 TTCCATGGAGAATGCCACCTCCGCGTTTGCCATTCAGATAC TTCCATGGAGAATGCCACCTCTGCGTTTGCCATTCAGATAC < 41bp 0.507967044875165 0.758719844666995 0.25237054 0.30826217 prediction 0.50150559958366 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3730079 chr19:3730080 synonymous SNV . 0 22 hm5C_associated_SNPs_108244 0 0 0 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61389 DeepMRMD:0;iRNA_m5C:0 61390 chr22 39884906 39884906 1 + C G rs202126201 39884905 + 39884885 39884925 41 CGGGTGGCGCCACAGGGGTCCCGAGGGAAGGCCGCCCGCCC CGGGTGGCGCCACAGGGGTCCGGAGGGAAGGCCGCCCGCCC < 41bp 0.603462764418979 0.854214330468515 0.8989359 0.90457606 prediction 0.501503132099072 Functional Gain - MGAT3 ENSG00000128268 CDS Human protein_coding chr22:39884905 chr22:39884906 synonymous SNV . 0 22 hm5C_associated_SNPs_108245 0 0 0 0 0 Endoplasmic reticulum 0.500231643921096 0.500231643921092 0.01128032 0 hm5C_site_61390 DeepMRMD:0.01128032;iRNA_m5C:0 61391 chr6 10557298 10557298 1 + C T SKCM 10557297 + 10557277 10557317 41 ATTTAAAGGTAAAAATATCACCCCAGGGGTGCTGCCCCCAG ATTTAAAGGTAAAAATATCACTCCAGGGGTGCTGCCCCCAG < 41bp 0.506264796999704 0.757014446007819 0.07030001 0.91454417 prediction 0.50149929801623 Functional Gain - GCNT2 ENSG00000111846 CDS Human protein_coding chr6:10557297 chr6:10557298 synonymous SNV . 0 22 hm5C_associated_SNPs_108246 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921092 0.82908834 0 hm5C_site_61391 DeepMRMD:0.82908834;iRNA_m5C:0 61392 chr8 101237493 101237493 1 + C A STAD 101237489 + 101237469 101237509 41 TGCCTGCTTCTGTGCCACTGCAAGCTTGGCATCCGGCAAAA TGCCTGCTTCTGTGCCACTGCAAGATTGGCATCCGGCAAAA < 41bp 0.673912242275485 0.924654826044145 0.30016357 0.74941564 prediction 0.501485167537321 Functional Gain - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101237489 chr8:101237493 nonsynonymous SNV 0.010 0 25 hm5C_associated_SNPs_108247 0 0 0 0 2 chromatin 0.500231643908482 0.500231503171104 0.49883128 0 hm5C_site_61392 DeepMRMD:0.49883128;iRNA_m5C:0 61393 chr7 37780137 37780137 1 + C G LUAD 37780136 + 37780116 37780156 41 CTCCTGGTGAAAATGAACACCCGGTCAGTGACCACCATGGC CTCCTGGTGAAAATGAACACCGGGTCAGTGACCACCATGGC < 41bp 0.443160102446602 0.750741310687898 0.067474216 0.52507657 prediction 0.501482621375796 Functional Gain - GPR141 ENSG00000187037 CDS Human protein_coding chr7:37780136 chr7:37780137 nonsynonymous SNV 0.939 3 22 hm5C_associated_SNPs_108248 0 0 0 0 0 exosome 0.500231758389092 0.500232615629402 0.0501531399999999 1.7144806196967e-06 hm5C_site_61393 DeepMRMD:0.0501531399999999;iRNA_m5C:1.7144806196967e-06 61394 chrX 153459019 153459019 1 + T A COAD 153459015 + 153458995 153459035 41 TGGGGACCATACGCCTTCTTCGCATGCTTTGCTGCTGCCAA TGGGGACCATACGCCTTCTTCGCAAGCTTTGCTGCTGCCAA < 41bp 0.618389879838571 0.869127699967042 0.33472311 0.31106597 prediction 0.501475640256943 Functional Gain - OPN1MW;OPN1MW2;OPN1MW3 ENSG00000147380 CDS Human other chrX:153459015 chrX:153459019 nonsynonymous SNV 0.955 1 25 hm5C_associated_SNPs_108249 0 0 0 0 0 unknown 0.500231643934403 0.500231723492548 0 1.59116288589445e-07 hm5C_site_61394 DeepMRMD:0;iRNA_m5C:1.59116288589445e-07 61395 chr6 30037008 30037008 1 + C G GBM 30037004 + 30036984 30037024 41 CCGCAAAGGACGGCGTCGTGCAACCCTAGGACCGACCCCCA CCGCAAAGGACGGCGTCGTGCAACGCTAGGACCGACCCCCA < 41bp 0.497803944103782 0.750736771398176 0.068674356 0.1336141 prediction 0.501473542796352 Functional Gain - PPP1R11 ENSG00000204619 CDS Human protein_coding chr6:30037004 chr6:30037008 synonymous SNV . 0 25 hm5C_associated_SNPs_108250 0 0 1 1 0 Ribosome 0.500231643923902 0.500231643921029 0 0 hm5C_site_61395 DeepMRMD:0;iRNA_m5C:0 61396 chr1 89835170 89835170 1 + C A LUAD 89835166 + 89835146 89835186 41 ATCTGGATGTGGTGCGTGCCCCACCCATCCAAGCCAAACCA ATCTGGATGTGGTGCGTGCCCCACACATCCAAGCCAAACCA < 41bp 0.331423422109028 0.750735742889506 0.028143585 0.035634786 prediction 0.501471485779011 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89835166 chr1:89835170 nonsynonymous SNV 0.148 2 25 hm5C_associated_SNPs_108251 0 0 0 0 2 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_61396 DeepMRMD:0;iRNA_m5C:0 61397 chr19 17837806 17837806 1 + C A rs7252905 17837802 + 17837782 17837822 41 AACCGAGTGTCTCCCGGACCCAGCCGCGGGAGGTGCGCCGG AACCGAGTGTCTCCCGGACCCAGCAGCGGGAGGTGCGCCGG < 41bp 0.672996452970412 0.923731816251318 0.35630834 0.7305317 prediction 0.501470726561812 Functional Gain - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17837802 chr19:17837806 nonsynonymous SNV 0.459 3 25 hm5C_associated_SNPs_108252 0 0 1 0 0 Cytosol 0.500231643921092 0.500231643918867 0.4610634 0 hm5C_site_61397 DeepMRMD:0.4610634;iRNA_m5C:0 61398 chr6 42992825 42992825 1 + C G rs3749903 42992821 + 42992801 42992841 41 CTGGAAATAGTCCTAAGAAACAAGCTTCTAGACCACCTATC CTGGAAATAGTCCTAAGAAACAAGGTTCTAGACCACCTATC < 41bp 0.563519678723414 0.814253365942422 0.3433732 0.8048114 prediction 0.501467374438015 Functional Gain - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42992821 chr6:42992825 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_108253 0 0 1 0 1 Ribosome 0.500231643920114 0.500231643921092 0.6096228 1.9568791032043e-12 hm5C_site_61398 DeepMRMD:0.6096228;iRNA_m5C:1.9568791032043e-12 61399 chr19 42085771 42085771 1 + C A OV 42085770 + 42085750 42085790 41 ACAGAGAAGGGCTCCGTGGTCCTGACCTGCCACACAAATAA ACAGAGAAGGGCTCCGTGGTCATGACCTGCCACACAAATAA < 41bp 0.498354297189224 0.750733107903531 0.0808776 0.13012743 prediction 0.501466215807061 Functional Gain - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42085770 chr19:42085771 nonsynonymous SNV 0.009 3 22 hm5C_associated_SNPs_108254 0 0 0 0 1 exosome 0.50023164311662 0.500237797905739 0 1.23095782385008e-05 hm5C_site_61399 DeepMRMD:0;iRNA_m5C:1.23095782385008e-05 61400 chr13 24234610 24234610 1 + T C UCEC 24234608 + 24234588 24234628 41 GAGCCTGCTGCCAGTGCCGCCGTGACTCAGTGCAGACCTGC GAGCCTGCTGCCAGTGCCGCCGCGACTCAGTGCAGACCTGC < 41bp 0.56055611484275 0.811288947630972 0.12116173 0.16790974 prediction 0.501465665576444 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24234608 chr13:24234610 synonymous SNV . 0 23 hm5C_associated_SNPs_108255 0 0 1 0 1 cytosol 0.500231643803069 0.500231635756915 0 0 hm5C_site_61400 DeepMRMD:0;iRNA_m5C:0 61401 chr22 21363642 21363642 1 + A C BRCA 21363645 - 21363625 21363665 41 TCTGCTCATGAAGCGGCTCTCGGTGGACTACGGGAAGAAGT TCTGCTCATGAAGCGGCTCTCGGGGGACTACGGGAAGAAGT < 41bp 0.653702587715819 0.904433691141501 0.90005195 0.9555489 prediction 0.501462206851363 Functional Gain - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363645 chr22:21363642 . . 0 24 hm5C_associated_SNPs_108256 0 0 1 0 1 unknown 0.500231682660792 0.500231643921092 0.1109939 0 hm5C_site_61401 DeepMRMD:0.1109939;iRNA_m5C:0 61402 chr1 32560458 32560458 1 + T C STAD 32560456 + 32560436 32560476 41 TCCATCAGCACCTCCGTGATCCTCATGCAGCACCTGCTGCC TCCATCAGCACCTCCGTGATCCCCATGCAGCACCTGCTGCC < 41bp 0.456663572781291 0.750725292563386 0.088831455 0.06978634 prediction 0.501450585126771 Functional Gain - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32560456 chr1:32560458 nonsynonymous SNV 1.000 4 23 hm5C_associated_SNPs_108257 0 0 0 2 1 chromatin 0.500264327793897 0.500231643919046 0 0 hm5C_site_61402 DeepMRMD:0;iRNA_m5C:0 61403 chr3 147131266 147131266 1 + C A HNSC 147131262 + 147131242 147131282 41 CCCGACCACAAGCTCCTTATCGCCCTCCTCCTCCGCAGTCC CCCGACCACAAGCTCCTTATCGCCATCCTCCTCCGCAGTCC < 41bp 0.676099202317658 0.926815566703861 0.32676938 0.5625299 prediction 0.501432728772406 Functional Gain - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147131262 chr3:147131266 synonymous SNV . 0 25 hm5C_associated_SNPs_108258 0 0 0 0 0 exosome 0.500231644108924 0.50023187780147 0.1250598 4.67385091740269e-07 hm5C_site_61403 DeepMRMD:0.1250598;iRNA_m5C:4.67385091740269e-07 61404 chr19 5667104 5667104 1 + C T UCEC 5667103 + 5667083 5667123 41 AGAGCGCCACGGCCGGGACTCCCGCGATGGCTGGGGGGGCT AGAGCGCCACGGCCGGGACTCTCGCGATGGCTGGGGGGGCT < 41bp 0.514042179040019 0.764750030924899 0.39164534 0.18600073 prediction 0.501415703769759 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667103 chr19:5667104 synonymous SNV . 0 22 hm5C_associated_SNPs_108259 0 0 1 0 2 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_61404 DeepMRMD:0;iRNA_m5C:0 61405 chr12 55523908 55523908 1 + T G UCEC 55523906 + 55523886 55523926 41 TCTGAAAACAAGTCTATCTCCTTTGCAGGCTGTGTGGCCCA TCTGAAAACAAGTCTATCTCCTGTGCAGGCTGTGTGGCCCA < 41bp 0.416721307634185 0.750704909529336 0.078252286 0.11272356 prediction 0.501409819058672 Functional Gain - OR9K2 ENSG00000170605 CDS Human protein_coding chr12:55523906 chr12:55523908 nonsynonymous SNV 0.990 3 23 hm5C_associated_SNPs_108260 0 0 0 0 0 unknown 0.500231645185293 0.500231742767099 0 1.95163613492255e-07 hm5C_site_61405 DeepMRMD:0;iRNA_m5C:1.95163613492255e-07 61406 chr15 42057138 42057138 1 + C T PAAD 42057137 + 42057117 42057157 41 CTGCCAACCTTGTGATGACTCCGCAAGGGCAATTGCTCACC CTGCCAACCTTGTGATGACTCTGCAAGGGCAATTGCTCACC < 41bp 0.510572590088764 0.761273360089752 0.043598235 0.34539264 prediction 0.501401540001976 Functional Gain - MGA ENSG00000174197 CDS Human protein_coding chr15:42057137 chr15:42057138 nonsynonymous SNV 0.999 5 22 hm5C_associated_SNPs_108261 0 0 1 0 1 Cytosol 0.500231883664072 0.500231643937704 0 0 hm5C_site_61406 DeepMRMD:0;iRNA_m5C:0 61407 chrX 82763567 82763567 1 + C A LUAD 82763563 + 82763543 82763583 41 CTGGCCACCAGCCCCCTGGACCAGCAGGACGTGAAGCCCGG CTGGCCACCAGCCCCCTGGACCAGAAGGACGTGAAGCCCGG < 41bp 0.355815216904648 0.750691697045027 0.098813295 0.28722954 prediction 0.501383394090054 Functional Gain - POU3F4 ENSG00000196767 CDS Human protein_coding chrX:82763563 chrX:82763567 nonsynonymous SNV 1.000 2 25 hm5C_associated_SNPs_108262 0 0 0 0 0 unknown 0.500231643921092 0.500231643921092 0 0 hm5C_site_61407 DeepMRMD:0;iRNA_m5C:0 61408 chr16 57714456 57714456 1 + C A BLCA 57714452 + 57714432 57714472 41 CAGTCCACGGTGCATATCCTCACACGCATCTCCCAGGCGGG CAGTCCACGGTGCATATCCTCACAAGCATCTCCCAGGCGGG < 41bp 0.332016509948576 0.750689723618398 0.092186034 0.08770692 prediction 0.501379447236796 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714452 chr16:57714456 nonsynonymous SNV 0.724 0 25 hm5C_associated_SNPs_108263 0 0 0 0 2 Nucleus 0.500231643921092 0.500231643921092 0 0 hm5C_site_61408 DeepMRMD:0;iRNA_m5C:0 61409 chr12 21370112 21370112 1 + C A COAD 21370108 + 21370088 21370128 41 TCTCCAGAACAGAAATTACTCAGCCCATTTGGGTGAATGCC TCTCCAGAACAGAAATTACTCAGCACATTTGGGTGAATGCC < 41bp 0.343688954370368 0.750680832943954 0.93566084 0.94089484 prediction 0.501361665887909 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21370108 chr12:21370112 synonymous SNV . 0 25 hm5C_associated_SNPs_108264 0 0 0 0 1 exosome 0.500231643921092 0.500231643921095 0.0104679999999999 4.66293670342566e-15 hm5C_site_61409 DeepMRMD:0.0104679999999999;iRNA_m5C:4.66293670342566e-15 61410 chr7 74005258 74005258 1 + C T STAD 74005257 + 74005237 74005277 41 CTGCCTGATGACATCCCCTTCCGGAACCCCAACACGTACGA CTGCCTGATGACATCCCCTTCTGGAACCCCAACACGTACGA < 41bp 0.534577596006781 0.785257896106648 0.65733564 0.2544334 prediction 0.501360600199735 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74005257 chr7:74005258 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_108265 0 0 1 0 1 Nucleus 0.50023164613868 0.500228166545896 0 0 hm5C_site_61410 DeepMRMD:0;iRNA_m5C:0 61411 chr11 66249785 66249785 1 + C T SKCM 66249784 + 66249764 66249804 41 CCTCTATGCCTACCACCTGTCCCGTGCCGCCTGGTACGGAG CCTCTATGCCTACCACCTGTCTCGTGCCGCCTGGTACGGAG < 41bp 0.516217080741189 0.766893674540311 0.06681004 0.1478549 prediction 0.501353187598244 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249784 chr11:66249785 synonymous SNV . 0 22 hm5C_associated_SNPs_108266 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643920504 0 0 hm5C_site_61411 DeepMRMD:0;iRNA_m5C:0 61412 chr5 167841564 167841564 1 + C A rs200207821 167841563 + 167841543 167841583 41 GAAAAGGACCTGCAGGCAGCCCGGGACACCCAGAGCAAGGC GAAAAGGACCTGCAGGCAGCCAGGGACACCCAGAGCAAGGC < 41bp 0.49218250295064 0.750676108588433 0.5937497 0.7954664 prediction 0.501352217176866 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167841563 chr5:167841564 synonymous SNV . 0 22 hm5C_associated_SNPs_108267 0 0 0 0 1 Ribosome 0.500231643921109 0.500231643921091 0.4034334 0 hm5C_site_61412 DeepMRMD:0.4034334;iRNA_m5C:0 61413 chr17 16285476 16285476 1 + C G KIRP 16285475 + 16285455 16285495 41 GATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGG GATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGG < 41bp 0.612957708417589 0.863633787039418 0.20432737 0.8121319 prediction 0.501352157243659 Functional Gain - UBB ENSG00000170315 CDS Human protein_coding chr17:16285475 chr17:16285476 synonymous SNV . 0 22 hm5C_associated_SNPs_108268 0 0 1 0 0 Ribosome 0.500231643921092 0.500231643921092 0.6242638 0 hm5C_site_61413 DeepMRMD:0.6242638;iRNA_m5C:0 61414 chr8 125487415 125487415 1 + T G MESO 125487412 + 125487392 125487432 41 CCATCAGCAGGTCTGGGCGGCGCTCGAAGTGGCGCTCCGGG CCATCAGCAGGTCTGGGCGGCGCGCGAAGTGGCGCTCCGGG < 41bp 0.373087955352563 0.750671911393202 0.49705863 0.80085707 prediction 0.501343822786405 Functional Gain - RNF139 ENSG00000170881 CDS Human protein_coding chr8:125487412 chr8:125487415 nonsynonymous SNV 1.000 2 24 hm5C_associated_SNPs_108269 0 0 1 0 0 Ribosome 0.50023164391357 0.50023164392041 0.60171414 1.36801681094312e-11 hm5C_site_61414 DeepMRMD:0.60171414;iRNA_m5C:1.36801681094312e-11 61415 chr12 100795591 100795591 1 + C A PRAD 100795587 + 100795567 100795607 41 GGGCAGTGGTTGCCATGCCCCTGGCTGGGGTGTTGGTGCAG GGGCAGTGGTTGCCATGCCCCTGGATGGGGTGTTGGTGCAG < 41bp 0.675117377913126 0.925786732953965 0.12653974 0.3001731 prediction 0.50133871008168 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100795587 chr12:100795591 nonsynonymous SNV 0.579 4 25 hm5C_associated_SNPs_108270 0 0 0 0 2 exosome 0.500231643819362 0.500230270288227 0 0 hm5C_site_61415 DeepMRMD:0;iRNA_m5C:0 61416 chr11 65294436 65294436 1 + C T SKCM 65294435 + 65294415 65294455 41 CTGACCCCTCCCCTACAGATCCCCAAAACGCTGGTGCCCCA CTGACCCCTCCCCTACAGATCTCCAAAACGCTGGTGCCCCA < 41bp 0.477955315697273 0.750666326595121 0.078632295 0.95723236 prediction 0.501332653190241 Functional Gain - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65294435 chr11:65294436 nonsynonymous SNV 0.997 4 22 hm5C_associated_SNPs_108271 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643917625 0.91446472 0 hm5C_site_61416 DeepMRMD:0.91446472;iRNA_m5C:0 61417 chr3 186572051 186572051 1 + A G COAD 186572053 - 186572033 186572073 41 TCCAGGTTCTCCTTTCCTGCCTTGGATTCCCGGAAAGCCTC TCCAGGTTCTCCTTTCCTGCCTCGGATTCCCGGAAAGCCTC < 41bp 0.499900172185387 0.75066167768747 0.03264016 0.06076494 prediction 0.50132335537494 Functional Gain - ADIPOQ ENSG00000181092 CDS Human protein_coding chr3:186572053 chr3:186572051 nonsynonymous SNV 0.549 1 23 hm5C_associated_SNPs_108272 0 0 0 0 0 exosome 0.500231643921092 0.500231643921856 0 1.52855506030392e-12 hm5C_site_61417 DeepMRMD:0;iRNA_m5C:1.52855506030392e-12 61418 chr5 50683541 50683541 1 + C A rs200172777 50683540 + 50683520 50683560 41 GCCAGTCTAGGCGCTGGCGACCCGCTCAGTCCCCTGCATCC GCCAGTCTAGGCGCTGGCGACACGCTCAGTCCCCTGCATCC < 41bp 0.509431806847266 0.760088694202851 0.19848731 0.1410467 prediction 0.501313774711171 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683540 chr5:50683541 nonsynonymous SNV 0.984 2 22 hm5C_associated_SNPs_108273 0 0 0 0 1 exosome 0.50023164345873 0.50023165029346 0 1.36694597863141e-08 hm5C_site_61418 DeepMRMD:0;iRNA_m5C:1.36694597863141e-08 61419 chr17 18144126 18144126 1 + C A rs575121495 18144122 + 18144102 18144142 41 CCTACGAGGCCTCACGGGACCTGGCGCAGGCACCTGACATG CCTACGAGGCCTCACGGGACCTGGAGCAGGCACCTGACATG < 41bp 0.674307321916239 0.924958516164912 0.27507162 0.8192793 prediction 0.501302388497347 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18144122 chr17:18144126 nonsynonymous SNV 0.917 3 25 hm5C_associated_SNPs_108274 0 0 1 0 1 Cytosol 0.500231644580106 0.500231644595221 0.6385586 3.02307068267282e-11 hm5C_site_61419 DeepMRMD:0.6385586;iRNA_m5C:3.02307068267282e-11 61420 chrX 41586602 41586602 1 + T C STAD 41586600 + 41586580 41586620 41 GCAAGTATGTTTGTCAGTCTCTTAATTTTAAGTTGGATTGC GCAAGTATGTTTGTCAGTCTCTCAATTTTAAGTTGGATTGC < 41bp 0.553666261629074 0.804315335596843 0.30444223 0.322622 prediction 0.501298147935538 Functional Gain - GPR82 ENSG00000171657 CDS Human protein_coding chrX:41586600 chrX:41586602 nonsynonymous SNV 1.000 1 23 hm5C_associated_SNPs_108275 0 0 0 0 0 nucleus 0.500231775955713 0.500229887754684 0 0 hm5C_site_61420 DeepMRMD:0;iRNA_m5C:0 61421 chr7 144015687 144015687 1 + C G rs62483833 144015683 + 144015663 144015703 41 CGTGTGGCTCCCTCCTGGCTCTGGCCCATGTGGTTCTCATC CGTGTGGCTCCCTCCTGGCTCTGGGCCATGTGGTTCTCATC < 41bp 0.586359028848625 0.837007142260435 0.26700395 0.84345335 prediction 0.501296226823619 Functional Gain - OR2A1;OR2A42 ENSG00000221970 CDS Human protein_coding chr7:144015683 chr7:144015687 nonsynonymous SNV 0.691 1 25 hm5C_associated_SNPs_108276 0 0 0 0 0 unknown 0.500231643921108 0.500231643921092 0.6869067 0 hm5C_site_61421 DeepMRMD:0.6869067;iRNA_m5C:0 61422 chr7 31009417 31009417 1 + C A COAD 31009413 + 31009393 31009433 41 CCAGGGTCACTTGATGGTCCCTGGCACCCCCAGCCCCCTCC CCAGGGTCACTTGATGGTCCCTGGAACCCCCAGCCCCCTCC < 41bp 0.663090604503877 0.913733528803086 0.16887605 0.7307042 prediction 0.501285848598418 Functional Gain - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31009413 chr7:31009417 synonymous SNV . 0 25 hm5C_associated_SNPs_108277 0 0 0 0 0 unknown 0.50023164392078 0.50023164412821 0.4614084 4.14860146236151e-10 hm5C_site_61422 DeepMRMD:0.4614084;iRNA_m5C:4.14860146236151e-10 61423 chr4 70146308 70146308 1 + C A LUAD 70146307 + 70146287 70146327 41 TGGAAAGGTGCTGGTGTGGACCGGTGAATACAGCCATTGGA TGGAAAGGTGCTGGTGTGGACAGGTGAATACAGCCATTGGA < 41bp 0.502026821119782 0.75266956950169 0.39235738 0.6735352 prediction 0.501285496763816 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70146307 chr4:70146308 synonymous SNV . 0 22 hm5C_associated_SNPs_108278 0 0 0 0 0 exosome 0.500231643918636 0.500231640563444 0.3470704 0 hm5C_site_61423 DeepMRMD:0.3470704;iRNA_m5C:0 61424 chr6 52269685 52269685 1 + C A rs3180068 52269681 + 52269661 52269701 41 TCTACACCTGGCAGTTTTCTCTGACGTGCTGTTCACTCACA TCTACACCTGGCAGTTTTCTCTGAAGTGCTGTTCACTCACA < 41bp 0.369769341856685 0.750641997653021 0.31614643 0.16057128 prediction 0.501283995306041 Functional Gain - PAQR8 ENSG00000170915 UTR3 Human protein_coding chr6:52269681 chr6:52269685 . . 0 25 hm5C_associated_SNPs_108279 0 0 1 0 0 Ribosome 0.500231662220384 0.500233206751525 0 3.08906228285721e-06 hm5C_site_61424 DeepMRMD:0;iRNA_m5C:3.08906228285721e-06 61425 chr20 21687302 21687302 1 + C A BRCA 21687298 + 21687278 21687318 41 GGCCATCGGGGGGAGCAAGCCCCGCGTCACCACTCCCAACG GGCCATCGGGGGGAGCAAGCCCCGAGTCACCACTCCCAACG < 41bp 0.679036513510064 0.929676213904372 0.5669464 0.61036205 prediction 0.501279400788615 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21687298 chr20:21687302 synonymous SNV . 0 25 hm5C_associated_SNPs_108280 0 0 0 0 0 unknown 0.500231651170357 0.500231643921188 0.0868313000000001 0 hm5C_site_61425 DeepMRMD:0.0868313000000001;iRNA_m5C:0 61426 chr11 86123497 86123497 1 + C T SKCM 86123496 + 86123476 86123516 41 TCTTAAGCAAGAGGAATATTCCCGGAGTCTCCTGAAACAAA TCTTAAGCAAGAGGAATATTCTCGGAGTCTCCTGAAACAAA < 41bp 0.511279699446096 0.761919219198798 0.68583226 0.4482981 prediction 0.501279039505403 Functional Gain - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86123496 chr11:86123497 synonymous SNV . 0 22 hm5C_associated_SNPs_108281 0 0 1 0 1 cytosol 0.500231643921092 0.500231643921087 0 0 hm5C_site_61426 DeepMRMD:0;iRNA_m5C:0 61427 chr16 71417284 71417284 1 + C A LUAD 71417280 + 71417260 71417300 41 TGTGTTGCAGGGATTCCTGTCAGACCTGCTGAAGAAGGCGA TGTGTTGCAGGGATTCCTGTCAGAACTGCTGAAGAAGGCGA < 41bp 0.338304870177855 0.750639137896141 0.4483738 0.43186995 prediction 0.501278275792283 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71417280 chr16:71417284 nonsynonymous SNV 0.995 2 25 hm5C_associated_SNPs_108282 0 0 0 1 2 Ribosome 0.500231145257354 0.500231656687599 0 1.02286048830891e-06 hm5C_site_61427 DeepMRMD:0;iRNA_m5C:1.02286048830891e-06 61428 chr12 108959146 108959146 1 + T G UCEC 108959143 + 108959123 108959163 41 TGTGGATGCTAGGTTTAAAACATTTGGCTGTGGTTCCGCAA TGTGGATGCTAGGTTTAAAACATGTGGCTGTGGTTCCGCAA < 41bp 0.360213191382944 0.750634617007116 0.20707363 0.2704798 prediction 0.501269234014233 Functional Gain - ISCU ENSG00000136003 CDS Human protein_coding chr12:108959143 chr12:108959146 nonsynonymous SNV 0.988 4 24 hm5C_associated_SNPs_108283 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921121 0 5.81756864903582e-14 hm5C_site_61428 DeepMRMD:0;iRNA_m5C:5.81756864903582e-14 61429 chr11 55872919 55872919 1 + T G STAD 55872916 + 55872896 55872936 41 CTGCAGTCCTCTACACTACACAGTTATTATGTCCAAAAGGC CTGCAGTCCTCTACACTACACAGGTATTATGTCCAAAAGGC < 41bp 0.361310499458811 0.750633053051226 0.0352045 0.16236547 prediction 0.501266106102452 Functional Gain - OR8H2 ENSG00000181767 CDS Human protein_coding chr11:55872916 chr11:55872919 nonsynonymous SNV 0.002 1 24 hm5C_associated_SNPs_108284 0 0 0 0 0 unknown 0.500207736931825 0.500232702873426 0 4.99318832025697e-05 hm5C_site_61429 DeepMRMD:0;iRNA_m5C:4.99318832025697e-05 61430 chr19 44661740 44661740 1 + C A OV 44661736 + 44661716 44661756 41 AGTGTGGGAAGGTCTTCAGTCAGGCCTCGCATCTTCTAACC AGTGTGGGAAGGTCTTCAGTCAGGACTCGCATCTTCTAACC < 41bp 0.667004927934646 0.917636400203208 0.55862826 0.64103 prediction 0.501262944537124 Functional Gain - ZNF234 ENSG00000263002 CDS Human protein_coding chr19:44661736 chr19:44661740 nonsynonymous SNV 0.072 1 25 hm5C_associated_SNPs_108285 0 0 1 0 0 exosome 0.500231646892892 0.500231643926781 0.16480348 0 hm5C_site_61430 DeepMRMD:0.16480348;iRNA_m5C:0 61431 chr1 9661186 9661186 1 + C T SKCM 9661185 + 9661165 9661205 41 CTTCTCCTCCGCCGTGAAGTCCCCGGTCCAGGTCATCCTGC CTTCTCCTCCGCCGTGAAGTCTCCGGTCCAGGTCATCCTGC < 41bp 0.526769404054529 0.777400718288851 0.28003493 0.75739837 prediction 0.501262628468646 Functional Gain - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9661185 chr1:9661186 synonymous SNV . 0 22 hm5C_associated_SNPs_108286 0 0 0 0 1 Ribosome 0.500231556732275 0.500231274767413 0.51479674 0 hm5C_site_61431 DeepMRMD:0.51479674;iRNA_m5C:0 61432 chr1 158450441 158450441 1 + T A SKCM 158450437 + 158450417 158450457 41 AGCTGAGGGCAGACGGAAAGCGTTTTCCACCTGCGCCTCTC AGCTGAGGGCAGACGGAAAGCGTTATCCACCTGCGCCTCTC < 41bp 0.445171402045772 0.750616791528511 0.09173757 0.17196205 prediction 0.501233583057022 Functional Gain - OR10R2 ENSG00000198965 CDS Human protein_coding chr1:158450437 chr1:158450441 nonsynonymous SNV 0.698 3 25 hm5C_associated_SNPs_108287 0 0 0 0 0 unknown 0.500231643921084 0.50023164392109 0 1.13242748511766e-14 hm5C_site_61432 DeepMRMD:0;iRNA_m5C:1.13242748511766e-14 61433 chr7 43846646 43846646 1 + T A UCEC 43846642 + 43846622 43846662 41 AGATATTTAAGCTTCCATTTCAAGTCTGGGTCCTTGGAGAA AGATATTTAAGCTTCCATTTCAAGACTGGGTCCTTGGAGAA < 41bp 0.419700404321534 0.750616790164966 0.15197277 0.24026942 prediction 0.501233580329932 Functional Gain - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43846642 chr7:43846646 nonsynonymous SNV 0.993 1 25 hm5C_associated_SNPs_108288 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61433 DeepMRMD:0;iRNA_m5C:0 61434 chr16 30681278 30681278 1 + C A rs563822289 30681277 + 30681257 30681297 41 CCCTGTAAGGGCCTCTAGGCCCTGGGCCTGCCTCCCCAAGG CCCTGTAAGGGCCTCTAGGCCATGGGCCTGCCTCCCCAAGG < 41bp 0.515803422929325 0.766418433104322 0.32797256 0.29697353 prediction 0.501230020349993 Functional Gain - FBRS ENSG00000156860 UTR3 Human protein_coding chr16:30681277 chr16:30681278 . . 0 22 hm5C_associated_SNPs_108289 0 0 1 0 0 chromatin 0.500231643921093 0.500231643922049 0 1.91335836063899e-12 hm5C_site_61434 DeepMRMD:0;iRNA_m5C:1.91335836063899e-12 61435 chr14 20404551 20404551 1 + C A LUSC 20404547 + 20404527 20404567 41 TAAGGCTCTTTCTACATTAACTGCCCACATCACAGTGGTCA TAAGGCTCTTTCTACATTAACTGCACACATCACAGTGGTCA < 41bp 0.346956696910999 0.750607207600634 0.18796203 0.25044936 prediction 0.501214415201269 Functional Gain - OR4K1 ENSG00000155249 CDS Human protein_coding chr14:20404547 chr14:20404551 synonymous SNV . 0 25 hm5C_associated_SNPs_108290 0 0 0 0 0 unknown 0.500230426864054 0.500233852378739 0 6.85102937025839e-06 hm5C_site_61435 DeepMRMD:0;iRNA_m5C:6.85102937025839e-06 61436 chr11 64026685 64026685 1 + C G rs28395882 64026684 + 64026664 64026704 41 TTCTGCCCTGAGCGAGAGCTCCGCGGCCACCGAGCCCTCCT TTCTGCCCTGAGCGAGAGCTCGGCGGCCACCGAGCCCTCCT < 41bp 0.447032007894929 0.750589960325265 0.83792675 0.91633546 prediction 0.501179920650531 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64026684 chr11:64026685 synonymous SNV . 0 22 hm5C_associated_SNPs_108291 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921092 0.15681742 0 hm5C_site_61436 DeepMRMD:0.15681742;iRNA_m5C:0 61437 chr5 140559230 140559230 1 + T A SKCM 140559226 + 140559206 140559246 41 CGGGTGGGCGCTTCAGACCGCGGCTCCCCGGCTTTGAGCAG CGGGTGGGCGCTTCAGACCGCGGCACCCCGGCTTTGAGCAG < 41bp 0.604956607045514 0.8555325929847 0.39894688 0.7628801 prediction 0.501151971878372 Functional Gain - PCDHB8 ENSG00000120322 CDS Human protein_coding chr5:140559226 chr5:140559230 nonsynonymous SNV 0.006 3 25 hm5C_associated_SNPs_108292 0 0 0 0 0 exosome 0.500231644209668 0.500231644224894 0.5257602 3.04507530302089e-11 hm5C_site_61437 DeepMRMD:0.5257602;iRNA_m5C:3.04507530302089e-11 61438 chr4 109571901 109571901 1 + C A GBM 109571897 + 109571877 109571917 41 GCCCTGGTTGCACATGCCGTCGGCCATGACTGTGTATGCTC GCCCTGGTTGCACATGCCGTCGGCAATGACTGTGTATGCTC < 41bp 0.66662447295349 0.917192493580996 0.092998475 0.1486207 prediction 0.501136041255012 Functional Gain - OSTC ENSG00000198856 CDS Human protein_coding chr4:109571897 chr4:109571901 synonymous SNV . 0 25 hm5C_associated_SNPs_108293 0 0 1 0 1 Ribosome 0.500231670590699 0.500231643921998 0 0 hm5C_site_61438 DeepMRMD:0;iRNA_m5C:0 61439 chr17 21825473 21825473 1 + C A LGG 21825469 + 21825449 21825489 41 GGGGTACACAGGAACGTCTCCGGACGCCAGGACCTGAAATG GGGGTACACAGGAACGTCTCCGGAAGCCAGGACCTGAAATG < 41bp 0.484201456745902 0.750556095837272 0.93260896 0.9106628 prediction 0.501112191674544 Functional Gain - FAM27E5 ENSG00000178130 ncRNA_exonic Human lincRNA chr17:21825469 chr17:21825473 . . 0 25 hm5C_associated_SNPs_108294 0 0 0 0 0 unknown 0.500231643920376 0.500231643921092 0 1.43218770176645e-12 hm5C_site_61439 DeepMRMD:0;iRNA_m5C:1.43218770176645e-12 61440 chr2 75104394 75104394 1 + C T SKCM 75104393 + 75104373 75104413 41 TCTTTGGGGGGAAGCTCAGCCCAGAGCTTCTCAACACCGGT TCTTTGGGGGGAAGCTCAGCCTAGAGCTTCTCAACACCGGT < 41bp 0.51081981124591 0.761375285376011 0.36907804 0.26227707 prediction 0.501110948260201 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75104393 chr2:75104394 nonsynonymous SNV 0.907 2 22 hm5C_associated_SNPs_108295 0 0 1 0 0 Nucleus 0.500231643921071 0.500231643921077 0 1.13242748511766e-14 hm5C_site_61440 DeepMRMD:0;iRNA_m5C:1.13242748511766e-14 61441 chr1 180904714 180904714 1 + C T rs200728905 180904713 + 180904693 180904733 41 CAGGGGAAGGCGCCCCCCGTCCCCAGGACCCTCCAGGAGCT CAGGGGAAGGCGCCCCCCGTCTCCAGGACCCTCCAGGAGCT < 41bp 0.505547615556261 0.756099648411017 0.030468851 0.9348198 prediction 0.501104065709511 Functional Gain - KIAA1614 ENSG00000135835 CDS Human protein_coding chr1:180904713 chr1:180904714 nonsynonymous SNV 0.001 0 22 hm5C_associated_SNPs_108296 0 0 0 0 0 nucleus 0.500231643801719 0.500231653070561 0.8696396 1.85376831662865e-08 hm5C_site_61441 DeepMRMD:0.8696396;iRNA_m5C:1.85376831662865e-08 61442 chr11 128786320 128786320 1 + C A LUAD 128786319 + 128786299 128786339 41 CCCAGGCATGACCTGCCAAGCCCGGAGCTCCTACATGGATA CCCAGGCATGACCTGCCAAGCACGGAGCTCCTACATGGATA < 41bp 0.5200858026283 0.770632129227494 0.026196033 0.06880671 prediction 0.501092653198387 Functional Gain - KCNJ5 ENSG00000120457 CDS Human protein_coding chr11:128786319 chr11:128786320 synonymous SNV . 0 22 hm5C_associated_SNPs_108297 0 0 0 0 1 Ribosome 0.500231643920802 0.500231643760259 0 0 hm5C_site_61442 DeepMRMD:0;iRNA_m5C:0 61443 chr17 27076587 27076587 1 + C T SKCM 27076586 + 27076566 27076606 41 GTTGAACTGCCCCGGAAGATCCTCAGCTGAGTGCAGGTGGG GTTGAACTGCCCCGGAAGATCTTCAGCTGAGTGCAGGTGGG < 41bp 0.501591309042372 0.752131267762988 0.19690925 0.72616076 prediction 0.501079917441232 Functional Gain - TRAF4 ENSG00000076604 CDS Human protein_coding chr17:27076586 chr17:27076587 nonsynonymous SNV 0.997 2 22 hm5C_associated_SNPs_108298 0 0 1 0 0 Ribosome 0.500231643954908 0.500231643922144 0.45232152 0 hm5C_site_61443 DeepMRMD:0.45232152;iRNA_m5C:0 61444 chr16 27078939 27078939 1 + C G rs114570071 27078938 + 27078918 27078958 41 GCCAGCAGCCGTCAGAGCGTCCGGCTGGATGGCAGTGCCCA GCCAGCAGCCGTCAGAGCGTCGGGCTGGATGGCAGTGCCCA < 41bp 0.583684574369029 0.834223503933634 0.72951925 0.9230412 prediction 0.501077859129209 Functional Gain - C16orf82 ENSG00000234186;ENSG00000261482 ncRNA_exonic Human other chr16:27078938 chr16:27078939 . . 0 22 hm5C_associated_SNPs_108299 0 0 0 0 0 unknown 0.50023164598699 0.500231645032654 0.3870439 0 hm5C_site_61444 DeepMRMD:0.3870439;iRNA_m5C:0 61445 chr4 660381 660381 1 + T C COAD 660379 + 660359 660399 41 CTGCAAGTGGGCTTCATCGACTTCGTGTGCACATTCGTGTA CTGCAAGTGGGCTTCATCGACTCCGTGTGCACATTCGTGTA < 41bp 0.468429164384358 0.750538133333246 0.09637323 0.18811339 prediction 0.501076266666492 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:660379 chr4:660381 nonsynonymous SNV 0.999 3 23 hm5C_associated_SNPs_108300 0 0 0 0 1 Nucleus 0.50016001265459 0.50024097421612 0 0.000161923123059848 hm5C_site_61445 DeepMRMD:0;iRNA_m5C:0.000161923123059848 61446 chr12 6940469 6940469 1 + T G rs202164451 6940466 + 6940446 6940486 41 CTGCCAAGAGGGCTCTGAACCAGTACCAGGCCCAGCTGGGA CTGCCAAGAGGGCTCTGAACCAGGACCAGGCCCAGCTGGGA < 41bp 0.669590781438331 0.92011698732574 0.22805518 0.7321856 prediction 0.501052411774818 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6940466 chr12:6940469 nonsynonymous SNV 0.980 2 24 hm5C_associated_SNPs_108301 0 0 1 0 2 membrane 0.500231643921092 0.500231643921092 0.4643712 0 hm5C_site_61446 DeepMRMD:0.4643712;iRNA_m5C:0 61447 chr19 35516926 35516926 1 + C G rs55783009 35516925 + 35516905 35516945 41 CCCAGCCTCCAGCGTTCACCCCCGACCCTGCTCACCTCCTC CCCAGCCTCCAGCGTTCACCCGCGACCCTGCTCACCTCCTC < 41bp 0.607648702676257 0.858174349749423 0.045202196 0.105564475 prediction 0.501051294146332 Functional Gain - GRAMD1A ENSG00000089351 intronic Human protein_coding chr19:35516925 chr19:35516926 . . 0 22 hm5C_associated_SNPs_108302 0 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0.500231640523631 0 0 hm5C_site_61447 DeepMRMD:0;iRNA_m5C:0 61448 chr7 66147178 66147178 1 + C G rs3800820 66147174 + 66147154 66147194 41 GACCTGCCGAGCGACGTGGGCGAGCGGTGACCTGGACCACG GACCTGCCGAGCGACGTGGGCGAGGGGTGACCTGGACCACG < 41bp 0.479628372508297 0.75052072036186 0.87961376 0.9052716 prediction 0.50104144072372 Functional Gain - RABGEF1 ENSG00000154710 UTR5 Human protein_coding chr7:66147174 chr7:66147178 . . 0 25 hm5C_associated_SNPs_108303 0 0 1 0 1 Cytosol 0.500229385012448 0.500232177961824 0.0513156799999999 5.58589875199189e-06 hm5C_site_61448 DeepMRMD:0.0513156799999999;iRNA_m5C:5.58589875199189e-06 61449 chr11 63987053 63987053 1 + C T GBM 63987052 + 63987032 63987072 41 GGGGAGCCGGCTGGCACAGACCCAGGGCTGGACGACCTGGA GGGGAGCCGGCTGGCACAGACTCAGGGCTGGACGACCTGGA < 41bp 0.508800263024431 0.759320869153469 0.77815986 0.12858066 prediction 0.501041212258076 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63987052 chr11:63987053 nonsynonymous SNV 0.571 0 22 hm5C_associated_SNPs_108304 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_61449 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 61450 chr1 151372164 151372164 1 + C A OV 151372163 + 151372143 151372183 41 CTCCCGATTCCTTCATGGATCCGGCGTCTGCACTTTACAGA CTCCCGATTCCTTCATGGATCAGGCGTCTGCACTTTACAGA < 41bp 0.513250060926439 0.763766640278856 0.516337 0.8270153 prediction 0.501033158704835 Functional Gain - PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151372163 chr1:151372164 nonsynonymous SNV 0.010 1 22 hm5C_associated_SNPs_108305 0 0 1 0 1 Ribosome 0.500231647777428 0.500231643921093 0.6213566 0 hm5C_site_61450 DeepMRMD:0.6213566;iRNA_m5C:0 61451 chr19 10157219 10157219 1 + T G rs11883054 10157216 + 10157196 10157236 41 CTCGAGAGGATCAATTGCATCTGTGGACAAGTGAGGGGGCT CTCGAGAGGATCAATTGCATCTGGGGACAAGTGAGGGGGCT < 41bp 0.395972640770676 0.750514596994867 0.33241445 0.5995139 prediction 0.501029193989733 Functional Gain - C3P1 ENSG00000167798 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:10157216 chr19:10157219 . . 0 24 hm5C_associated_SNPs_108306 0 0 0 0 1 unknown 0.500231643921092 0.500231429437399 0.1990278 0 hm5C_site_61451 DeepMRMD:0.1990278;iRNA_m5C:0 61452 chr2 219736369 219736369 1 + C G rs141494427 219736368 + 219736348 219736388 41 TGCCCGGCACCCCCGGACCCCCTGGCCCCGCGGGCTCCCCG TGCCCGGCACCCCCGGACCCCGTGGCCCCGCGGGCTCCCCG < 41bp 0.45171882122087 0.750513924399285 0.41416958 0.7750145 prediction 0.50102784879857 Functional Gain - WNT6 ENSG00000115596 CDS Human protein_coding chr2:219736368 chr2:219736369 nonsynonymous SNV 0.002 0 22 hm5C_associated_SNPs_108307 0 0 0 0 0 exosome 0.500231643926245 0.500231644024825 0.550029 1.97159177872663e-10 hm5C_site_61452 DeepMRMD:0.550029;iRNA_m5C:1.97159177872663e-10 61453 chr10 50819954 50819954 1 + C A UCEC 50819950 + 50819930 50819970 41 CCGCTAGTGGTCTCACTATGCGGCCTCTGTTTTGGCATAGC CCGCTAGTGGTCTCACTATGCGGCATCTGTTTTGGCATAGC < 41bp 0.366921045921921 0.750512475361128 0.23352331 0.35779244 prediction 0.501024950722257 Functional Gain - SLC18A3 ENSG00000187714 CDS Human protein_coding chr10:50819950 chr10:50819954 nonsynonymous SNV 0.996 0 25 hm5C_associated_SNPs_108308 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61453 DeepMRMD:0;iRNA_m5C:0 61454 chr6 53659736 53659736 1 + C G rs188558122 53659732 + 53659712 53659752 41 GCCGGGAAACGCCCTCGGCGCGCACCCACTGGCGCGCATGC GCCGGGAAACGCCCTCGGCGCGCAGCCACTGGCGCGCATGC < 41bp 0.541040773869309 0.791543564690447 0.014598161 0.063572496 prediction 0.501005581642277 Functional Gain - LRRC1 ENSG00000137269 UTR5 Human protein_coding chr6:53659732 chr6:53659736 . . 0 25 hm5C_associated_SNPs_108309 0 0 0 0 0 Ribosome 0.50023164392377 0.500231643921092 0 0 hm5C_site_61454 DeepMRMD:0;iRNA_m5C:0 61455 chr3 38045751 38045751 1 + C A COAD 38045750 + 38045730 38045770 41 TGTCCGTGCTGGCCAGGCTCCCTGAGGAGGTCCCCAGCTTC TGTCCGTGCTGGCCAGGCTCCATGAGGAGGTCCCCAGCTTC < 41bp 0.492647309973534 0.750492199046991 0.27889013 0.27511153 prediction 0.500984398093983 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38045750 chr3:38045751 nonsynonymous SNV 0.698 1 22 hm5C_associated_SNPs_108310 0 0 1 0 1 chromatin 0.500231643921092 0.500231643921092 0 0 hm5C_site_61455 DeepMRMD:0;iRNA_m5C:0 61456 chrX 55651167 55651167 1 + C A rs7884414 55651163 + 55651143 55651183 41 CATTAATCTCTAAACTTACCCAGCCTGGTTGGTGCCAAGTC CATTAATCTCTAAACTTACCCAGCATGGTTGGTGCCAAGTC < 41bp 0.362490555452947 0.750487371460788 0.12924477 0.17233396 prediction 0.500974742921576 Functional Gain - FOXR2 ENSG00000189299 UTR3 Human protein_coding chrX:55651163 chrX:55651167 . . 0 25 hm5C_associated_SNPs_108311 0 0 0 2 0 unknown 0.500231643942332 0.500231643926772 0 0 hm5C_site_61456 DeepMRMD:0;iRNA_m5C:0 61457 chr19 10369957 10369957 1 + T G UCEC 10369955 + 10369935 10369975 41 CCCAAGTCATCAGGGTGGCACGTCAGGCCCTGCACGATGTG CCCAAGTCATCAGGGTGGCACGGCAGGCCCTGCACGATGTG < 41bp 0.609814160907775 0.860300745789442 0.5888802 0.9259404 prediction 0.500973169763334 Functional Gain - MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10369955 chr19:10369957 synonymous SNV . 0 23 hm5C_associated_SNPs_108312 0 0 1 0 0 Cytosol 0.499771311793883 0.500231728006687 0.6741204 0.000463456013374053 hm5C_site_61457 DeepMRMD:0.6741204;iRNA_m5C:0.000463456013374053 61458 chr12 132426506 132426506 1 + C A rs149378338 132426502 + 132426482 132426522 41 ACAACTTCAGTGCCACCGCTCTCACGGCAGGTGGCACGGGC ACAACTTCAGTGCCACCGCTCTCAAGGCAGGTGGCACGGGC < 41bp 0.339454535504362 0.750486267977292 0.07478607 0.24136937 prediction 0.500972535954583 Functional Gain - PUS1 ENSG00000177192 CDS Human protein_coding chr12:132426502 chr12:132426506 nonsynonymous SNV 0.000 0 25 hm5C_associated_SNPs_108313 0 0 1 0 1 Cytosol 0.500231643920982 0.500231642034852 0 0 hm5C_site_61458 DeepMRMD:0;iRNA_m5C:0 61459 chr10 37430978 37430978 1 + T C rs144539033 37430976 + 37430956 37430996 41 AGGAAGACCTAGGAAGATCGCATGGGAGAAAAAAGAAGACA AGGAAGACCTAGGAAGATCGCACGGGAGAAAAAAGAAGACA < 41bp 0.527913979314942 0.778395803934835 0.56328946 0.45237398 prediction 0.500963649239787 Functional Gain - ANKRD30A ENSG00000148513 CDS Human protein_coding chr10:37430976 chr10:37430978 nonsynonymous SNV 0.014 1 23 hm5C_associated_SNPs_108314 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_61459 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 61460 chr16 27078742 27078742 1 + C A rs139385102 27078738 + 27078718 27078758 41 CTCTCTAAAGAGCCGGCTGACTGGCCCCGCCCACAGCACCA CTCTCTAAAGAGCCGGCTGACTGGACCCGCCCACAGCACCA < 41bp 0.653194247084911 0.903672815248219 0.24797946 0.30238855 prediction 0.500957136326615 Functional Gain - C16orf82 ENSG00000234186;ENSG00000261482 ncRNA_exonic;splicing Human other chr16:27078738 chr16:27078742 . . 0 25 hm5C_associated_SNPs_108315 0 0 0 0 0 unknown 0.500231643921097 0.500231643921093 0 0 hm5C_site_61460 DeepMRMD:0;iRNA_m5C:0 61461 chr22 32253488 32253488 1 + C A rs373166302 32253484 + 32253464 32253504 41 TGGGAAGAGCTCCGCCCAGTCAGCCGAGAGCAGCAGCGTTG TGGGAAGAGCTCCGCCCAGTCAGCAGAGAGCAGCAGCGTTG < 41bp 0.658477801554956 0.908950324452403 0.3539346 0.6509292 prediction 0.500945045794894 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32253484 chr22:32253488 synonymous SNV . 0 25 hm5C_associated_SNPs_108316 0 0 1 0 2 chromatin 0.500231643921095 0.500231643919569 0.3018584 0 hm5C_site_61461 DeepMRMD:0.3018584;iRNA_m5C:0 61462 chr20 31601738 31601738 1 + C A LUAD 31601734 + 31601714 31601754 41 CCTGCTCTTTATTCTCGGGCCACGCCAACGAGTTTGATGGC CCTGCTCTTTATTCTCGGGCCACGACAACGAGTTTGATGGC < 41bp 0.331267977157931 0.750471508930071 0.0699524 0.072969556 prediction 0.500943017860142 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31601734 chr20:31601738 nonsynonymous SNV 0.000 2 25 hm5C_associated_SNPs_108317 0 0 0 0 1 cytosol 0.500231641415694 0.500231419933579 0 0 hm5C_site_61462 DeepMRMD:0;iRNA_m5C:0 61463 chrX 55757849 55757849 1 + C T UCEC 55757848 + 55757828 55757868 41 AGCCAACGGGACAACATCTTCCGAAATGTGGAGGTTCTGAT AGCCAACGGGACAACATCTTCTGAAATGTGGAGGTTCTGAT < 41bp 0.495663146399609 0.75046303649564 0.17189878 0.12638238 prediction 0.50092607299128 Functional Gain - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55757848 chrX:55757849 stopgain 0.998 1 22 hm5C_associated_SNPs_108318 0 0 1 0 1 Cytosol 0.500231643921092 0.500231643842745 0 0 hm5C_site_61463 DeepMRMD:0;iRNA_m5C:0 61464 chr12 121132914 121132914 1 + C T SKCM 121132913 + 121132893 121132933 41 CCTAGGGGTACTATGACAATCCCAAGGTCTGTGCACTCTAC CCTAGGGGTACTATGACAATCTCAAGGTCTGTGCACTCTAC < 41bp 0.541853233496237 0.792309183315201 0.13870427 0.10757667 prediction 0.500911899637928 Functional Gain - MLEC ENSG00000110917 CDS Human protein_coding chr12:121132913 chr12:121132914 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108319 0 0 1 0 2 Ribosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_61464 DeepMRMD:0;iRNA_m5C:0 61465 chr21 43979120 43979120 1 + C A THCA 43979119 + 43979099 43979139 41 ATGGGAAGGGCTCCATCCACCCGAACCACGTCGTCATTCTC ATGGGAAGGGCTCCATCCACCAGAACCACGTCGTCATTCTC < 41bp 0.487297862219519 0.750454995025508 0.39813617 0.6347039 prediction 0.500909990051015 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979119 chr21:43979120 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_108320 0 0 0 0 2 Nucleus 0.500231643911545 0.500231643916921 0.2694078 1.07507336366552e-11 hm5C_site_61465 DeepMRMD:0.2694078;iRNA_m5C:1.07507336366552e-11 61466 chr12 5021623 5021623 1 + C G LAML 5021622 + 5021602 5021642 41 AGTCGCACTTCTCCAGTATCCCCGATGCTTTCTGGTGGGCG AGTCGCACTTCTCCAGTATCCGCGATGCTTTCTGGTGGGCG < 41bp 0.602688832500525 0.853139668344733 0.08561006 0.8437081 prediction 0.500901671688416 Functional Gain - KCNA1 ENSG00000111262 CDS Human protein_coding chr12:5021622 chr12:5021623 nonsynonymous SNV 1.000 5 22 hm5C_associated_SNPs_108321 0 0 0 0 0 unknown 0.500231644011099 0.500231643921214 0.6874162 0 hm5C_site_61466 DeepMRMD:0.6874162;iRNA_m5C:0 61467 chr7 100198206 100198206 1 + T C SKCM 100198204 + 100198184 100198224 41 GCCACCAGGGAGTGCCTATACATCCTGTCCAGCCACGACAT GCCACCAGGGAGTGCCTATACACCCTGTCCAGCCACGACAT < 41bp 0.527370363390411 0.77781895123712 0.01060909 0.017620891 prediction 0.500897175693418 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100198204 chr7:100198206 nonsynonymous SNV 1.000 2 23 hm5C_associated_SNPs_108322 0 0 0 0 1 exosome 0.500231625300311 0.500231617235689 0 0 hm5C_site_61467 DeepMRMD:0;iRNA_m5C:0 61468 chr19 3282363 3282363 1 + C T rs570394805 3282362 + 3282342 3282382 41 CTCTGCAGGGCTGCACTCACCCCCGCTGCTGGGCACCACCG CTCTGCAGGGCTGCACTCACCTCCGCTGCTGGGCACCACCG < 41bp 0.526553642735891 0.776998095530564 0.26153994 0.6386125 prediction 0.500888905589345 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3282362 chr19:3282363 synonymous SNV . 0 22 hm5C_associated_SNPs_108323 0 0 0 0 1 exosome 0.500232024259747 0.500230615572654 0.277225 0 hm5C_site_61468 DeepMRMD:0.277225;iRNA_m5C:0 61469 chr11 64940204 64940204 1 + C T SKCM 64940203 + 64940183 64940223 41 CTTGGACTCGGGACCGGCGCCCCCACCATGGTGGGGTTCAG CTTGGACTCGGGACCGGCGCCTCCACCATGGTGGGGTTCAG < 41bp 0.518537838266727 0.768979491179818 0.315574 0.9267672 prediction 0.500883305826183 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64940203 chr11:64940204 nonsynonymous SNV 0.152 0 22 hm5C_associated_SNPs_108324 0 0 0 0 1 nucleolus 0.50023164374563 0.500231641192234 0.8535344 0 hm5C_site_61469 DeepMRMD:0.8535344;iRNA_m5C:0 61470 chr1 112020367 112020367 1 + C G THCA 112020366 + 112020346 112020386 41 AGATCACTCCAAGCCCCAGGCCCCAGATCCTCACTCAGATC AGATCACTCCAAGCCCCAGGCGCCAGATCCTCACTCAGATC < 41bp 0.602223631358821 0.852661802041785 0.3260728 0.2904247 prediction 0.500876341365928 Functional Gain - C1orf162 ENSG00000143110 CDS Human protein_coding chr1:112020366 chr1:112020367 synonymous SNV . 0 22 hm5C_associated_SNPs_108325 0 0 0 0 2 nucleus 0.500231643921092 0.500231643921146 0 1.0813572259849e-13 hm5C_site_61470 DeepMRMD:0;iRNA_m5C:1.0813572259849e-13 61471 chr19 45971880 45971880 1 + C A TGCT 45971876 + 45971856 45971896 41 TTTCCCCGGAGACTACGACTCCGGCTCCCGGTGCAGCTCCT TTTCCCCGGAGACTACGACTCCGGATCCCGGTGCAGCTCCT < 41bp 0.366706109292094 0.750431942132943 0.47373995 0.59247077 prediction 0.500863884265886 Functional Gain - FOSB ENSG00000125740 CDS Human protein_coding chr19:45971876 chr19:45971880 synonymous SNV . 0 25 hm5C_associated_SNPs_108326 0 0 1 0 1 Cytosol 0.500231643923156 0.500231643921414 0.18494154 0 hm5C_site_61471 DeepMRMD:0.18494154;iRNA_m5C:0 61472 chr13 37007278 37007278 1 + C A COAD 37007277 + 37007257 37007297 41 TGTCAGATACTCACCAGAGCCCCGCTGGGCCAGGATCCCCC TGTCAGATACTCACCAGAGCCACGCTGGGCCAGGATCCCCC < 41bp 0.501009001346552 0.751433966698607 0.027298987 0.020432293 prediction 0.500849930704111 Functional Gain - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37007277 chr13:37007278 nonsynonymous SNV 0.524 0 22 hm5C_associated_SNPs_108327 0 0 0 0 1 exosome 0.500201066857624 0.50022421983792 0 4.63059605930738e-05 hm5C_site_61472 DeepMRMD:0;iRNA_m5C:4.63059605930738e-05 61473 chr17 71228443 71228443 1 + C A LUAD 71228439 + 71228419 71228459 41 TCCGGCGTCTGCTCCGCGCCCCCCCATGTCGCTGCCGCCGT TCCGGCGTCTGCTCCGCGCCCCCCAATGTCGCTGCCGCCGT < 41bp 0.352143116148687 0.750424217554887 0.09050989 0.13537896 prediction 0.500848435109773 Functional Gain - FAM104A ENSG00000133193 CDS Human protein_coding chr17:71228439 chr17:71228443 nonsynonymous SNV 1.000 1 25 hm5C_associated_SNPs_108328 0 0 0 0 0 Ribosome 0.500231601539917 0.50023164505005 0 8.70202678804333e-08 hm5C_site_61473 DeepMRMD:0;iRNA_m5C:8.70202678804333e-08 61474 chr12 57853954 57853954 1 + C G rs377330434 57853953 + 57853933 57853973 41 GCCCAGACTCCAGCCCTGGACCGCGCATCCCGAGCCCAGCG GCCCAGACTCCAGCCCTGGACGGCGCATCCCGAGCCCAGCG < 41bp 0.576027028563137 0.826450910756484 0.12608153 0.32751003 prediction 0.500847764386692 Functional Gain - GLI1 ENSG00000111087 UTR5 Human protein_coding chr12:57853953 chr12:57853954 . . 0 22 hm5C_associated_SNPs_108329 0 0 0 0 1 nucleoplasm 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_61474 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 61475 chr3 57542130 57542130 1 + C A CESC 57542126 + 57542106 57542146 41 CATGTGGAGGCTCCCAGGCGCCCGCGCCGCGCTTCGGGTGA CATGTGGAGGCTCCCAGGCGCCCGAGCCGCGCTTCGGGTGA < 41bp 0.653418479680951 0.90384116113743 0.045218617 0.12257391 prediction 0.500845362912959 Functional Gain - PDE12 ENSG00000174840 CDS Human protein_coding chr3:57542126 chr3:57542130 synonymous SNV . 0 25 hm5C_associated_SNPs_108330 0 0 1 0 0 Endoplasmic reticulum 0.500231840025522 0.500231642254012 0 0 hm5C_site_61475 DeepMRMD:0;iRNA_m5C:0 61476 chr15 65917020 65917020 1 + T G rs559502671 65917018 + 65916998 65917038 41 GGTAGAAGAGTAGGCACTTACGTGCCGTCCACATTCATGAC GGTAGAAGAGTAGGCACTTACGGGCCGTCCACATTCATGAC < 41bp 0.411881218458242 0.750420258364379 0.13454682 0.8626646 prediction 0.500840516728758 Functional Gain - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65917018 chr15:65917020 nonsynonymous SNV 0.000 1 23 hm5C_associated_SNPs_108331 0 0 0 0 0 Endoplasmic reticulum 0.500231643913794 0.500231643930167 0.7253292 3.27462501559239e-11 hm5C_site_61476 DeepMRMD:0.7253292;iRNA_m5C:3.27462501559239e-11 61477 chr9 96407983 96407983 1 + C G rs9695734 96407982 + 96407962 96408002 41 CATGGAGGAGCACGGCTTCACCGAGCCCATCCTCGTCCCTA CATGGAGGAGCACGGCTTCACGGAGCCCATCCTCGTCCCTA < 41bp 0.611846860306273 0.862251935773002 0.43206388 0.8957615 prediction 0.500810150933458 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407982 chr9:96407983 synonymous SNV . 0 22 hm5C_associated_SNPs_108332 0 0 1 0 2 chromatin 0.500231643919976 0.500231643916657 0.791523 0 hm5C_site_61477 DeepMRMD:0.791523;iRNA_m5C:0 61478 chr11 60201389 60201389 1 + T C UCEC 60201387 + 60201367 60201407 41 AAGGCTGTTACTGTCCTGTTCTTGGTAAGTATGTTGCATTT AAGGCTGTTACTGTCCTGTTCTCGGTAAGTATGTTGCATTT < 41bp 0.498804653729405 0.750404005875406 0.2515241 0.3370214 prediction 0.500808011750812 Functional Gain - MS4A5 ENSG00000166930 CDS Human protein_coding chr11:60201387 chr11:60201389 nonsynonymous SNV 0.557 1 23 hm5C_associated_SNPs_108333 0 0 0 0 1 unknown 0.500231643921092 0.500231644228598 0 6.15010931070969e-10 hm5C_site_61478 DeepMRMD:0;iRNA_m5C:6.15010931070969e-10 61479 chr1 43638051 43638051 1 + C G UCEC 43638050 + 43638030 43638070 41 GCTACGGCGTTTGAAAGTGTCCGGGTTGCTTAGGATCCCTA GCTACGGCGTTTGAAAGTGTCGGGGTTGCTTAGGATCCCTA < 41bp 0.579462068815946 0.82986290560827 0.905756 0.9449575 prediction 0.500801673584649 Functional Gain - EBNA1BP2 ENSG00000117395 CDS Human protein_coding chr1:43638050 chr1:43638051 synonymous SNV . 0 22 hm5C_associated_SNPs_108334 0 0 0 0 1 Ribosome 0.500227482472398 0.500231643920957 0.078403 8.32289711727441e-06 hm5C_site_61479 DeepMRMD:0.078403;iRNA_m5C:8.32289711727441e-06 61480 chrX 67937280 67937280 1 + C A LUAD 67937279 + 67937259 67937299 41 AGCCAGCAGACTTGCCCTTGCCAGGCCGTGCCCCCAGCTCG AGCCAGCAGACTTGCCCTTGCAAGGCCGTGCCCCCAGCTCG < 41bp 0.525399817791071 0.775800013897315 0.72740483 0.89112973 prediction 0.500800392212489 Functional Gain - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67937279 chrX:67937280 nonsynonymous SNV 0.000 0 22 hm5C_associated_SNPs_108335 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.3274498 8.88178419700125e-16 hm5C_site_61480 DeepMRMD:0.3274498;iRNA_m5C:8.88178419700125e-16 61481 chr16 3535857 3535857 1 + C A rs369683370 3535853 + 3535833 3535873 41 GCAGCCTGGGGGAGGCTTTCCTCGCAAGCACAGAGCTCTGA GCAGCCTGGGGGAGGCTTTCCTCGAAAGCACAGAGCTCTGA < 41bp 0.656454778090941 0.906845006735694 0.58018565 0.9242908 prediction 0.500780457289505 Functional Gain - NAA60 ENSG00000263212 ncRNA_intronic Human processed_transcript chr16:3535853 chr16:3535857 . . 0 25 hm5C_associated_SNPs_108336 0 0 1 0 0 chromatin 0.500231643921083 0.500231643920916 0.6882103 0 hm5C_site_61481 DeepMRMD:0.6882103;iRNA_m5C:0 61482 chr11 117152717 117152717 1 + C T LAML 117152716 + 117152696 117152736 41 GGTTATGCCCAGTGCAGATCCCCGCTCCTTGTCTTTCCCAA GGTTATGCCCAGTGCAGATCCTCGCTCCTTGTCTTTCCCAA < 41bp 0.517586059593759 0.767958326719138 0.09518036 0.058240592 prediction 0.500744534250757 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152716 chr11:117152717 synonymous SNV . 0 22 hm5C_associated_SNPs_108337 0 0 1 0 0 chromatin 0.5002316439229 0.500231643920916 0 0 hm5C_site_61482 DeepMRMD:0;iRNA_m5C:0 61483 chr18 9887106 9887106 1 + C A LUSC 9887105 + 9887085 9887125 41 GCCCAAAGAGGGTGACATCCCCAAGTCCTCAGCAAAACCCA GCCCAAAGAGGGTGACATCCCAAAGTCCTCAGCAAAACCCA < 41bp 0.534391537030237 0.784758385367736 0.11253363 0.17497268 prediction 0.500733696674998 Functional Gain - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9887105 chr18:9887106 synonymous SNV . 0 22 hm5C_associated_SNPs_108338 0 0 0 0 0 exosome 0.500231643923495 0.500231643921462 0 0 hm5C_site_61483 DeepMRMD:0;iRNA_m5C:0 61484 chrX 48341100 48341100 1 + C A LUAD 48341099 + 48341079 48341119 41 AGCTGGCCAAGGAGATCCGCCCCCAGGACTGCCCCATCAGC AGCTGGCCAAGGAGATCCGCCACCAGGACTGCCCCATCAGC < 41bp 0.523170171008972 0.773532309540305 0.08423495 0.11601052 prediction 0.500724277062666 Functional Gain - FTSJ1 ENSG00000068438 CDS Human protein_coding chrX:48341099 chrX:48341100 nonsynonymous SNV 0.993 1 22 hm5C_associated_SNPs_108339 0 0 1 0 1 Ribosome 0.500231643921092 0.500231643921104 0 2.37587727269783e-14 hm5C_site_61484 DeepMRMD:0;iRNA_m5C:2.37587727269783e-14 61485 chr12 100612246 100612246 1 + T C UCEC 100612244 + 100612224 100612264 41 ACAAATCTGGGGAACAAATTCTTCGTTTGGCCAATGAGAGA ACAAATCTGGGGAACAAATTCTCCGTTTGGCCAATGAGAGA < 41bp 0.458566836456501 0.750359741948881 0.08271429 0.06616861 prediction 0.500719483897762 Functional Gain - ACTR6 ENSG00000075089 CDS Human protein_coding chr12:100612244 chr12:100612246 synonymous SNV . 0 23 hm5C_associated_SNPs_108340 0 0 1 0 1 Ribosome 0.500231643913732 0.500231674941359 0 6.20552529362328e-08 hm5C_site_61485 DeepMRMD:0;iRNA_m5C:6.20552529362328e-08 61486 chr11 63965419 63965419 1 + C A rs375422757 63965418 + 63965398 63965438 41 GTCTCTGGCAGAGCACCGAACCCCAGATGTGCTCAAGAAAT GTCTCTGGCAGAGCACCGAACACCAGATGTGCTCAAGAAAT < 41bp 0.510315822923833 0.760671075372178 0.31852567 0.19220975 prediction 0.500710504896689 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63965418 chr11:63965419 synonymous SNV . 0 22 hm5C_associated_SNPs_108341 0 0 1 0 2 Ribosome 0.500231643643813 0.500231647023639 0 6.75965150520597e-09 hm5C_site_61486 DeepMRMD:0;iRNA_m5C:6.75965150520597e-09 61487 chr1 226413217 226413217 1 + C A LUAD 226413216 + 226413196 226413236 41 CCCCTCTTCCAGGTATGGTTCCAGAACAGGCGTGCCAAGTC CCCCTCTTCCAGGTATGGTTCAAGAACAGGCGTGCCAAGTC < 41bp 0.509301294151717 0.759642483396595 0.2787271 0.21164224 prediction 0.500682378489757 Functional Gain - MIXL1 ENSG00000185155 CDS Human protein_coding chr1:226413216 chr1:226413217 nonsynonymous SNV 0.004 4 22 hm5C_associated_SNPs_108342 0 0 0 0 1 exosome 0.500231643921093 0.500231643921092 0 0 hm5C_site_61487 DeepMRMD:0;iRNA_m5C:0 61488 chr10 43600465 43600465 1 + C T STAD 43600464 + 43600444 43600484 41 AGCACGCGCTGGGCCCTGGACCGCGAGCAGCGGGAGAAGTA AGCACGCGCTGGGCCCTGGACTGCGAGCAGCGGGAGAAGTA < 41bp 0.502102347333552 0.752443350011706 0.17285207 0.13398072 prediction 0.500682005356308 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43600464 chr10:43600465 nonsynonymous SNV 0.994 4 22 hm5C_associated_SNPs_108343 0 0 0 0 1 Cytosol 0.500231643932629 0.500231644798315 0 1.73137193471007e-09 hm5C_site_61488 DeepMRMD:0;iRNA_m5C:1.73137193471007e-09 61489 chr3 87147061 87147061 1 + C A rs567070791 87147057 + 87147037 87147077 41 TCCACCCAGTTCGAGCTTCTCGGCCGCTTTGTTTACCTACT TCCACCCAGTTCGAGCTTCTCGGCAGCTTTGTTTACCTACT < 41bp 0.405400413284173 0.750334407893899 0.32605284 0.6092267 prediction 0.500668815787798 Functional Gain - LINC00506 ENSG00000241293;ENSG00000264119 intergenic Human other chr3:87147057 chr3:87147061 . . 0 25 hm5C_associated_SNPs_108344 0 0 0 0 0 unknown 0.50023164540836 0.500231643920729 0.2184534 0 hm5C_site_61489 DeepMRMD:0.2184534;iRNA_m5C:0 61490 chr1 11576215 11576215 1 + C A LUSC 11576214 + 11576194 11576234 41 CTACGCAGCTAACGTCTTCTCCCAGGTGCGGACCTGTCCTC CTACGCAGCTAACGTCTTCTCACAGGTGCGGACCTGTCCTC < 41bp 0.541871299496657 0.792202766383101 0.7274668 0.94055474 prediction 0.500662933772888 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11576214 chr1:11576215 synonymous SNV . 0 22 hm5C_associated_SNPs_108345 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0.42617588 0 hm5C_site_61490 DeepMRMD:0.42617588;iRNA_m5C:0 61491 chr12 108169133 108169133 1 + C A LUSC 108169129 + 108169109 108169149 41 CGCCCTGCGTCTGGACGCCGCGTGCTGGGAGTGGGCGCGCA CGCCCTGCGTCTGGACGCCGCGTGATGGGAGTGGGCGCGCA < 41bp 0.658710794463723 0.909040028161597 0.15738267 0.22147533 prediction 0.500658467395746 Functional Gain - ASCL4 ENSG00000187855 CDS Human protein_coding chr12:108169129 chr12:108169133 stopgain 0.224 0 25 hm5C_associated_SNPs_108346 0 0 0 0 0 exosome 0.500231643884125 0.500231643916186 0 6.41224850994604e-11 hm5C_site_61491 DeepMRMD:0;iRNA_m5C:6.41224850994604e-11 61492 chrX 150911715 150911715 1 + T C rs201870506 150911713 + 150911693 150911733 41 ATCCACAGCCCTGAGGTGCGCTTCAACCGCCTGCTGCACTT ATCCACAGCCCTGAGGTGCGCTCCAACCGCCTGCTGCACTT < 41bp 0.581393619399307 0.831718514729394 0.123625726 0.8944425 prediction 0.500649790660173 Functional Gain - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150911713 chrX:150911715 nonsynonymous SNV 0.989 3 23 hm5C_associated_SNPs_108347 0 0 0 0 0 unknown 0.500231643996691 0.500231655175592 0.788885 2.23578011659953e-08 hm5C_site_61492 DeepMRMD:0.788885;iRNA_m5C:2.23578011659953e-08 61493 chr11 63993764 63993764 1 + C A rs367699671 63993760 + 63993740 63993780 41 AGGGGCGGAGCCTGAGGGACCCGGCGGCTGGTGAGCGCCCG AGGGGCGGAGCCTGAGGGACCCGGAGGCTGGTGAGCGCCCG < 41bp 0.628061453957299 0.87838488449603 0.9094341 0.91512847 prediction 0.500646861077462 Functional Gain - NUDT22 ENSG00000149761 UTR5 Human protein_coding chr11:63993760 chr11:63993764 . . 0 25 hm5C_associated_SNPs_108348 0 0 0 0 1 Ribosome 0.500231643921092 0.500231643921092 0.0113887399999999 0 hm5C_site_61493 DeepMRMD:0.0113887399999999;iRNA_m5C:0 61494 chr12 9002848 9002848 1 + C A COAD 9002844 + 9002824 9002864 41 CGCCAGTACTTCCCAGAGACCTGGCTCTGGGATCTGTTTCC CGCCAGTACTTCCCAGAGACCTGGATCTGGGATCTGTTTCC < 41bp 0.333419350394815 0.750322602188395 0.11628419 0.28412008 prediction 0.50064520437679 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9002844 chr12:9002848 nonsynonymous SNV 1.000 0 25 hm5C_associated_SNPs_108349 0 0 0 0 2 exosome 0.500231643921093 0.500231643921766 0 1.34514621663584e-12 hm5C_site_61494 DeepMRMD:0;iRNA_m5C:1.34514621663584e-12 Obesity 61495 chr16 90110056 90110056 1 + C A UCEC 90110055 + 90110035 90110075 41 CTCAGAGTGCCCCGCACTCACCTGGGGGTTGGGGCAGTGCC CTCAGAGTGCCCCGCACTCACATGGGGGTTGGGGCAGTGCC < 41bp 0.51827984767907 0.768599750239558 0.7540549 0.93160677 prediction 0.500639805120977 Functional Gain - URAHP ENSG00000222019 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:90110055 chr16:90110056 . . 0 22 hm5C_associated_SNPs_108350 0 0 1 0 0 unknown 0.500231643921024 0.500231637915442 0.35510374 0 hm5C_site_61495 DeepMRMD:0.35510374;iRNA_m5C:0 61496 chr2 234873391 234873391 1 + C A STAD 234873390 + 234873370 234873410 41 GCTGGCTAATGAGTACGAGACCCGGGCTGTTGGTGAGTCCA GCTGGCTAATGAGTACGAGACACGGGCTGTTGGTGAGTCCA < 41bp 0.491885663302261 0.750315746252478 0.3534486 0.3090882 prediction 0.500631492504956 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234873390 chr2:234873391 synonymous SNV . 0 22 hm5C_associated_SNPs_108351 0 0 0 0 1 exosome 0.500231648535383 0.500231642986189 0 0 hm5C_site_61496 DeepMRMD:0;iRNA_m5C:0 61497 chr6 158448559 158448559 1 + C G rs9456988 158448558 + 158448538 158448578 41 AGCGACAGCGAGGTGGTGCCCCAGAGAGGGCTGCCTCATTC AGCGACAGCGAGGTGGTGCCCGAGAGAGGGCTGCCTCATTC < 41bp 0.578207563074586 0.828522964631897 0.8736049 0.90095437 prediction 0.500630803114621 Functional Gain - SYNJ2 ENSG00000078269 intronic Human protein_coding chr6:158448558 chr6:158448559 . . 0 22 hm5C_associated_SNPs_108352 0 0 0 0 0 Cytosol 0.500231642599949 0.500231640780827 0.05469894 0 hm5C_site_61497 DeepMRMD:0.05469894;iRNA_m5C:0 61498 chr17 73124956 73124956 1 + C A MESO 73124955 + 73124935 73124975 41 CCCAGAGCTGACCGCCACGCCCGTGGTGCAGTGCATGCTTC CCCAGAGCTGACCGCCACGCCAGTGGTGCAGTGCATGCTTC < 41bp 0.506579588851266 0.756892881688492 0.14837229 0.20078278 prediction 0.500626585674451 Functional Gain - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73124955 chr17:73124956 synonymous SNV . 0 22 hm5C_associated_SNPs_108353 0 0 0 0 0 Cytosol 0.500236654800096 0.50023769657743 0 2.08355466857491e-06 hm5C_site_61498 DeepMRMD:0;iRNA_m5C:2.08355466857491e-06 61499 chr16 57764957 57764957 1 + C T rs149394680 57764956 + 57764936 57764976 41 TCTCAGGCCATGTTCCGCATCCGCATCCTGGAGCAGCGCCT TCTCAGGCCATGTTCCGCATCTGCATCCTGGAGCAGCGCCT < 41bp 0.513343382248478 0.763648932885277 0.17773604 0.3315171 prediction 0.500611101273599 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57764956 chr16:57764957 nonsynonymous SNV 0.994 3 22 hm5C_associated_SNPs_108354 0 0 0 0 1 cytosol 0.500231560240529 0.500231571827507 0 2.31739571976419e-08 hm5C_site_61499 DeepMRMD:0;iRNA_m5C:2.31739571976419e-08 61500 chr3 97806797 97806797 1 + T A LUSC 97806793 + 97806773 97806813 41 TACTACGGAACTCTGATCTTCATGTATGTGCGTCCTGCATC TACTACGGAACTCTGATCTTCATGAATGTGCGTCCTGCATC < 41bp 0.579958538286629 0.83024901900361 0.66739815 0.38996482 prediction 0.500580961433962 Functional Gain - OR5AC2 ENSG00000196578 CDS Human protein_coding chr3:97806793 chr3:97806797 nonsynonymous SNV 0.571 3 25 hm5C_associated_SNPs_108355 0 0 0 0 0 unknown 0.500231625915897 0.50023164382798 0 3.58241667441916e-08 hm5C_site_61500 DeepMRMD:0;iRNA_m5C:3.58241667441916e-08 61501 chr19 51919204 51919204 1 + T A COAD 51919200 + 51919180 51919220 41 CTGGGAGCCAAGCCTGTTCTCCGCTCGGCAGGTGTAGCGCC CTGGGAGCCAAGCCTGTTCTCCGCACGGCAGGTGTAGCGCC < 41bp 0.569813827426237 0.820087742131058 0.3059709 0.7399984 prediction 0.50054782940964 Functional Gain - SIGLEC10 ENSG00000142512 CDS Human protein_coding chr19:51919200 chr19:51919204 synonymous SNV . 0 25 hm5C_associated_SNPs_108356 0 0 0 0 0 exosome 0.500231643980968 0.500231669792535 0.4799968 5.16231335456752e-08 hm5C_site_61501 DeepMRMD:0.4799968;iRNA_m5C:5.16231335456752e-08 61502 chr1 92415219 92415219 1 + C G rs143341279 92415218 + 92415198 92415238 41 GGGCAGTTGAGAAGGCCACCCCGCTTCGTGCCTGCAGCCCA GGGCAGTTGAGAAGGCCACCCGGCTTCGTGCCTGCAGCCCA < 41bp 0.483315705936741 0.750270313719245 0.07225558 0.23305875 prediction 0.50054062743849 Functional Gain - BRDT ENSG00000137948 UTR5 Human protein_coding chr1:92415218 chr1:92415219 . . 0 22 hm5C_associated_SNPs_108357 0 0 0 0 1 exosome 0.500231674367033 0.500231643921371 0 0 hm5C_site_61502 DeepMRMD:0;iRNA_m5C:0 61503 chr19 55112268 55112268 1 + C G SKCM 55112267 + 55112247 55112287 41 CTATTTGAGGCTCAGCACAGCCAGAGAAGCCTCTGAGATGC CTATTTGAGGCTCAGCACAGCGAGAGAAGCCTCTGAGATGC < 41bp 0.598661297305137 0.848931473859229 0.820106 0.88168025 prediction 0.500540353108184 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55112267 chr19:55112268 nonsynonymous SNV 0.011 0 22 hm5C_associated_SNPs_108358 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.1231485 0 hm5C_site_61503 DeepMRMD:0.1231485;iRNA_m5C:0 61504 chr6 96969791 96969791 1 + C A HNSC 96969787 + 96969767 96969807 41 AGAGATTAGGCGGTTGGCGGCCGACTTCCAGCGGGCGCAGT AGAGATTAGGCGGTTGGCGGCCGAATTCCAGCGGGCGCAGT < 41bp 0.389772768077627 0.750268176012716 0.8323177 0.6429323 prediction 0.500536352025432 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96969787 chr6:96969791 nonsynonymous SNV 0.998 1 25 hm5C_associated_SNPs_108359 0 0 1 0 1 Endoplasmic reticulum 0.500231643878163 0.500231658984342 0 3.02123570605772e-08 hm5C_site_61504 DeepMRMD:0;iRNA_m5C:3.02123570605772e-08 61505 chr4 71464112 71464112 1 + C A UCEC 71464108 + 71464088 71464128 41 GGAAGTCTGCAGAGATTAAACACACTTTCTCAGGTAATCAT GGAAGTCTGCAGAGATTAAACACAATTTCTCAGGTAATCAT < 41bp 0.346733003426089 0.750264512633457 0.22916374 0.16497889 prediction 0.500529025266913 Functional Gain - AMBN ENSG00000178522 CDS Human protein_coding chr4:71464108 chr4:71464112 nonsynonymous SNV 0.995 4 25 hm5C_associated_SNPs_108360 0 0 0 0 2 exosome 0.500231653486069 0.500232200574089 0 1.09417603888495e-06 hm5C_site_61505 DeepMRMD:0;iRNA_m5C:1.09417603888495e-06 61506 chr17 56247633 56247633 1 + T A LUAD 56247629 + 56247609 56247649 41 TCAAGATCTCCAACAGTGGGCTGCTGGATGTCGTCTGGTTC TCAAGATCTCCAACAGTGGGCTGCAGGATGTCGTCTGGTTC < 41bp 0.436180369764355 0.750257348460776 0.086282104 0.08870411 prediction 0.500514696921552 Functional Gain - OR4D2 ENSG00000255713 CDS Human protein_coding chr17:56247629 chr17:56247633 nonsynonymous SNV 0.824 4 25 hm5C_associated_SNPs_108361 0 0 0 0 0 unknown 0.500231523521485 0.500229716880918 0 0 hm5C_site_61506 DeepMRMD:0;iRNA_m5C:0 61507 chr1 76262726 76262726 1 + C A BLCA 76262722 + 76262702 76262742 41 CTTCTGCCCCGGCGGTTTCCCCGTCGTCGGGAGAAACCCGC CTTCTGCCCCGGCGGTTTCCCCGTAGTCGGGAGAAACCCGC < 41bp 0.37463268940483 0.750253698318985 0.2145012 0.071284145 prediction 0.500507396637971 Functional Gain - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76262722 chr1:76262726 stopgain 0.000 0 25 hm5C_associated_SNPs_108362 0 0 1 0 0 exosome 0.500231643921425 0.500231643921078 0 0 hm5C_site_61507 DeepMRMD:0;iRNA_m5C:0 61508 chr14 21961130 21961130 1 + C T UCEC 21961129 + 21961109 21961149 41 CCCCTCCATTACAACAGATGCCACAGCCCCCGACTCAGCAG CCCCTCCATTACAACAGATGCTACAGCCCCCGACTCAGCAG < 41bp 0.51890418997307 0.76915260003182 0.007287711 0.44986877 prediction 0.5004968201175 Functional Gain - TOX4 ENSG00000092203 CDS Human protein_coding chr14:21961129 chr14:21961130 nonsynonymous SNV 1.000 2 22 hm5C_associated_SNPs_108363 0 0 1 0 0 Ribosome 0.500231643921089 0.500231643921092 0 5.99520433297585e-15 hm5C_site_61508 DeepMRMD:0;iRNA_m5C:5.99520433297585e-15 61509 chr9 137271301 137271301 1 + C G rs551317612 137271300 + 137271280 137271320 41 CCAGGCATCTGTGTCTGTGTCCGGGAAGTGGAGGAGGGCCC CCAGGCATCTGTGTCTGTGTCGGGGAAGTGGAGGAGGGCCC < 41bp 0.464014708971999 0.750247587154822 0.8739983 0.9309568 prediction 0.500495174309643 Functional Gain - MIR4669 ENSG00000263897 ncRNA_exonic Human miRNA chr9:137271300 chr9:137271301 . . 0 22 hm5C_associated_SNPs_108364 0 0 0 0 0 unknown 0.500231643921093 0.50023164973176 0.113917 1.16213352274741e-08 hm5C_site_61509 DeepMRMD:0.113917;iRNA_m5C:1.16213352274741e-08 61510 chr17 8215755 8215755 1 + C A rs115065009 8215751 + 8215731 8215771 41 GGTCACCCTGCACGCCTCTGCTCCCCATGGCTGGAGTCCTG GGTCACCCTGCACGCCTCTGCTCCACATGGCTGGAGTCCTG < 41bp 0.317840163377886 0.75024353114278 0.15199375 0.9053034 prediction 0.500487062285559 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8215751 chr17:8215755 nonsynonymous SNV 0.034 1 25 hm5C_associated_SNPs_108365 0 0 0 0 0 exosome 0.500231751739682 0.500330493954602 0.8106068 0.000197484429841133 hm5C_site_61510 DeepMRMD:0.8106068;iRNA_m5C:0.000197484429841133 61511 chr8 110131437 110131437 1 + C A LUAD 110131436 + 110131416 110131456 41 ATCTCAACAGTGCCATCAACCCGGTGATTTACAATCTCATG ATCTCAACAGTGCCATCAACCAGGTGATTTACAATCTCATG < 41bp 0.526775205196861 0.777016068307113 0.7827755 0.9162113 prediction 0.500481726220504 Functional Gain - TRHR ENSG00000174417 CDS Human protein_coding chr8:110131436 chr8:110131437 nonsynonymous SNV 0.992 5 22 hm5C_associated_SNPs_108366 0 0 0 0 0 exosome 0.500231647800957 0.500230803775179 0.2668716 0 hm5C_site_61511 DeepMRMD:0.2668716;iRNA_m5C:0 61512 chr2 79350029 79350029 1 + C A LUAD 79350028 + 79350008 79350048 41 CAAGTCCTGGGGCATTGGAGCCCCAAGCAGTGTTAATCCTG CAAGTCCTGGGGCATTGGAGCACCAAGCAGTGTTAATCCTG < 41bp 0.513346526650377 0.763585406318181 0.7031073 0.46114033 prediction 0.500477759335608 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350028 chr2:79350029 synonymous SNV . 0 22 hm5C_associated_SNPs_108367 0 0 0 0 2 Ribosome 0.500231643921012 0.500231642466804 0 0 hm5C_site_61512 DeepMRMD:0;iRNA_m5C:0 61513 chr7 90894946 90894946 1 + C A BLCA 90894942 + 90894922 90894962 41 CTTCCAGAGTTCTGGACCAGCAACCCTCAGCACGGCGGCGG CTTCCAGAGTTCTGGACCAGCAACACTCAGCACGGCGGCGG < 41bp 0.66257414484276 0.91280425459249 0.20335388 0.33347446 prediction 0.50046021949946 Functional Gain - FZD1 ENSG00000157240 CDS Human protein_coding chr7:90894942 chr7:90894946 nonsynonymous SNV 0.990 1 25 hm5C_associated_SNPs_108368 0 0 0 0 0 Endoplasmic reticulum 0.500231643919931 0.500231643983249 0 1.26636923170054e-10 hm5C_site_61513 DeepMRMD:0;iRNA_m5C:1.26636923170054e-10 61514 chr8 22426700 22426700 1 + C A LUAD 22426699 + 22426679 22426719 41 ATCCCTAAGCCCATCAAGCCCCCGACCTACCAGGTGCTGGA ATCCCTAAGCCCATCAAGCCCACGACCTACCAGGTGCTGGA < 41bp 0.516059846830267 0.766281429582715 0.25867686 0.19127959 prediction 0.500443165504895 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22426699 chr8:22426700 nonsynonymous SNV 0.832 0 22 hm5C_associated_SNPs_108369 0 0 1 0 2 Cytosol 0.500231643921092 0.500231643919688 0 0 hm5C_site_61514 DeepMRMD:0;iRNA_m5C:0 61515 chr19 10818212 10818212 1 + T C COAD 10818210 + 10818190 10818230 41 TGGACCGGTGCATTGCAGCCCATCAGCGGCCGGACAAGCAG TGGACCGGTGCATTGCAGCCCACCAGCGGCCGGACAAGCAG < 41bp 0.565134893874828 0.815351606379747 0.411464 0.3475737 prediction 0.500433425009839 Functional Gain - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10818210 chr19:10818212 nonsynonymous SNV . 0 23 hm5C_associated_SNPs_108370 0 0 1 0 2 Ribosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61515 DeepMRMD:0;iRNA_m5C:0 61516 chr17 18005286 18005286 1 + C T STAD 18005285 + 18005265 18005305 41 GAAGAGGTGGACCGCCTGGCCCGAAAACCCAACAGTGTGGT GAAGAGGTGGACCGCCTGGCCTGAAAACCCAACAGTGTGGT < 41bp 0.496941592860729 0.750213467767998 0.06909227 0.07844007 prediction 0.500426935535996 Functional Gain - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18005285 chr17:18005286 stopgain 0.511 1 22 hm5C_associated_SNPs_108371 0 0 1 0 2 Cytosol 0.500185576490398 0.500231643738958 0 9.21344971203109e-05 hm5C_site_61516 DeepMRMD:0;iRNA_m5C:9.21344971203109e-05 61517 chrX 99854700 99854700 1 + C A ACC 99854696 + 99854676 99854716 41 TGTAACTGGTGGGTGGCCCGCATGCTGGGGAGGGTCTAATA TGTAACTGGTGGGTGGCCCGCATGATGGGGAGGGTCTAATA < 41bp 0.627987364934356 0.87819866833124 0.36551625 0.359008 prediction 0.500422606793768 Functional Gain - TNMD ENSG00000000005 CDS Human protein_coding chrX:99854696 chrX:99854700 nonsynonymous SNV 1.000 4 25 hm5C_associated_SNPs_108372 0 0 0 0 0 exosome 0.500231643921092 0.500231643921093 0 2.22044604925031e-16 hm5C_site_61517 DeepMRMD:0;iRNA_m5C:2.22044604925031e-16 61518 chr17 57270975 57270975 1 + C A HNSC 57270971 + 57270951 57270991 41 AGACTCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAG AGACTCCAAAGCTGTGCTTCCTCCAACACTGCCACAGCCAG < 41bp 0.313776307624176 0.750207690205336 0.15459114 0.9596409 prediction 0.500415380410672 Functional Gain - PRR11 ENSG00000068489 CDS Human protein_coding chr17:57270971 chr17:57270975 synonymous SNV . 0 25 hm5C_associated_SNPs_108373 0 0 1 4 0 Cytoplasm 0.500276128852927 0.500231700020899 0.9192818 0 hm5C_site_61518 DeepMRMD:0.9192818;iRNA_m5C:0 61519 chr9 74533416 74533416 1 + C G rs373558784 74533415 + 74533395 74533435 41 GGGTCCCCAGCCCCCGACCCCCGCATCGGTCCATGGCCTGT GGGTCCCCAGCCCCCGACCCCGGCATCGGTCCATGGCCTGT < 41bp 0.591529695919027 0.841724566944566 0.18837565 0.6252076 prediction 0.500389742051078 Functional Gain - C9orf85 ENSG00000155621 UTR3 Human protein_coding chr9:74533415 chr9:74533416 . . 0 22 hm5C_associated_SNPs_108374 0 0 0 0 2 Cytosol 0.500231287327764 0.500231639382096 0.2504152 7.04108663596159e-07 hm5C_site_61519 DeepMRMD:0.2504152;iRNA_m5C:7.04108663596159e-07 61520 chr5 140720216 140720216 1 + C A LUAD 140720212 + 140720192 140720232 41 GTGCTGGACCAGAACGACAACGCGCCCGAGATCCTGTACCC GTGCTGGACCAGAACGACAACGCGACCGAGATCCTGTACCC < 41bp 0.337866101785906 0.750188228521146 0.05425331 0.11154005 prediction 0.500376457042293 Functional Gain - PCDHGA2 ENSG00000081853 CDS Human protein_coding chr5:140720212 chr5:140720216 nonsynonymous SNV 0.008 4 25 hm5C_associated_SNPs_108375 0 0 0 0 0 exosome 0.500231640525722 0.500231643921092 0 6.79074152465375e-09 hm5C_site_61520 DeepMRMD:0;iRNA_m5C:6.79074152465375e-09 61521 chr7 86468832 86468832 1 + C T SKCM 86468831 + 86468811 86468851 41 ACCAAGACAAACTGCATTGCCCGCATCTTCGATGGGGTCAA ACCAAGACAAACTGCATTGCCTGCATCTTCGATGGGGTCAA < 41bp 0.493871834836126 0.750182337245043 0.28237754 0.21925569 prediction 0.500364674490087 Functional Gain - GRM3 ENSG00000198822 CDS Human protein_coding chr7:86468831 chr7:86468832 nonsynonymous SNV 0.997 5 22 hm5C_associated_SNPs_108376 0 0 0 0 0 Endoplasmic reticulum 0.500231621532444 0.500231648231166 0 5.33974426897288e-08 hm5C_site_61521 DeepMRMD:0;iRNA_m5C:5.33974426897288e-08 61522 chr22 25264409 25264409 1 + C T SKCM 25264408 + 25264388 25264428 41 AGAGGCCGCCCTTCCGCTTCCCCAAGGGCGGGCACCTCCTG AGAGGCCGCCCTTCCGCTTCCTCAAGGGCGGGCACCTCCTG < 41bp 0.555124141089702 0.805302468550956 0.49037915 0.6273808 prediction 0.500356654922508 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264408 chr22:25264409 nonsynonymous SNV 1.000 4 22 hm5C_associated_SNPs_108377 0 0 0 0 2 exosome 0.500231643921092 0.500231643921092 0.2547616 0 hm5C_site_61522 DeepMRMD:0.2547616;iRNA_m5C:0 61523 chr16 48396114 48396114 1 + G T ACC 48396115 - 48396095 48396135 41 CTCACATGTTGTCCAACTTGCCGGGGCCCTTTGGGATCCAT CTCACATGTTGTCCAACTTGCAGGGGCCCTTTGGGATCCAT < 41bp 0.52336897761734 0.773540338801083 0.60138655 0.8732047 prediction 0.500342722367487 Functional Gain - SIAH1 ENSG00000196470 CDS Human protein_coding chr16:48396115 chr16:48396114 synonymous SNV . 0 22 hm5C_associated_SNPs_108378 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.5436363 0 hm5C_site_61523 DeepMRMD:0.5436363;iRNA_m5C:0 61524 chr11 65403915 65403915 1 + C A COAD 65403911 + 65403891 65403931 41 CCTGGCTGGGGGCCGCGGTCCTCCCTGAGTGGCTCTGGTGA CCTGGCTGGGGGCCGCGGTCCTCCATGAGTGGCTCTGGTGA < 41bp 0.329485560897651 0.750168153859256 0.2924895 0.9656416 prediction 0.500336307718512 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403911 chr11:65403915 nonsynonymous SNV 0.918 0 25 hm5C_associated_SNPs_108379 0 0 1 0 1 Ribosome 0.500231644303553 0.500231643921533 0.9312832 0 hm5C_site_61524 DeepMRMD:0.9312832;iRNA_m5C:0 61525 chr9 131910683 131910683 1 + C G rs376025897 131910679 + 131910659 131910699 41 CTTTGCGCTGCTGTGAGCCTCACCCTGGGCCCCTGGGCCCT CTTTGCGCTGCTGTGAGCCTCACCGTGGGCCCCTGGGCCCT < 41bp 0.485762772121533 0.750161978421335 0.021435916 0.28434467 prediction 0.50032395684267 Functional Gain - PTPA ENSG00000119383 UTR3 Human protein_coding chr9:131910679 chr9:131910683 . . 0 25 hm5C_associated_SNPs_108380 0 0 1 0 0 Nucleus 0.500231643921092 0.500231643920801 0 0 hm5C_site_61525 DeepMRMD:0;iRNA_m5C:0 61526 chr17 80544992 80544992 1 + C T GBM 80544991 + 80544971 80545011 41 GCCACGCTCGGCACTGCCAGCCGGATCATTCAGACGGCACA GCCACGCTCGGCACTGCCAGCTGGATCATTCAGACGGCACA < 41bp 0.510654760477315 0.760805336947737 0.9051984 0.5027793 prediction 0.500301152940845 Functional Gain - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80544991 chr17:80544992 nonsynonymous SNV 0.335 5 22 hm5C_associated_SNPs_108381 0 0 1 0 1 Cytosol 0.500231643028366 0.500230348003865 0 0 hm5C_site_61526 DeepMRMD:0;iRNA_m5C:0 61527 chr11 55798480 55798480 1 + C G UCEC 55798476 + 55798456 55798496 41 TCATGTACAGACACTCAGATCAACCAGCTTCTGCTCTTTGC TCATGTACAGACACTCAGATCAACGAGCTTCTGCTCTTTGC < 41bp 0.479547232933673 0.750145562950055 0.046673715 0.2385903 prediction 0.50029112590011 Functional Gain - OR5AS1 ENSG00000181785 CDS Human protein_coding chr11:55798476 chr11:55798480 nonsynonymous SNV 0.255 0 25 hm5C_associated_SNPs_108382 0 0 0 0 0 unknown 0.500231646790564 0.500231857003085 0 4.20425043001771e-07 hm5C_site_61527 DeepMRMD:0;iRNA_m5C:4.20425043001771e-07 61528 chr11 119206690 119206690 1 + C A rs141362166 119206689 + 119206669 119206709 41 CCTAGCACTGGGCTCAGAGGCCTGGCGCCGAGTCTGGAGCC CCTAGCACTGGGCTCAGAGGCATGGCGCCGAGTCTGGAGCC < 41bp 0.502766127498712 0.752895918218122 0.60733473 0.86702746 prediction 0.500259581438822 Functional Gain - RNF26 ENSG00000173456 CDS Human protein_coding chr11:119206689 chr11:119206690 synonymous SNV . 0 22 hm5C_associated_SNPs_108383 0 0 1 0 0 chromatin 0.500231643921092 0.500231643921092 0.51938546 0 hm5C_site_61528 DeepMRMD:0.51938546;iRNA_m5C:0 61529 chr3 185434316 185434316 1 + C A UCEC 185434315 + 185434295 185434335 41 GGGGAAGTGGGCTGCTTTATCCTGTAGCCCTCCTCAGATGC GGGGAAGTGGGCTGCTTTATCATGTAGCCCTCCTCAGATGC < 41bp 0.503003579876792 0.753129045316616 0.24044254 0.7187252 prediction 0.500250930879647 Functional Gain - IGF2BP2-AS1 ENSG00000163915 CDS Human antisense chr3:185434315 chr3:185434316 nonsynonymous SNV . 0 22 hm5C_associated_SNPs_108384 0 0 0 0 2 unknown 0.500231643921796 0.500231643921101 0.4374504 0 hm5C_site_61529 DeepMRMD:0.4374504;iRNA_m5C:0 61530 chr19 50549146 50549146 1 + C A UCEC 50549145 + 50549125 50549165 41 GCGACATCAGGCCATTCACACCGCAGAAAAGCCCTATAGCT GCGACATCAGGCCATTCACACAGCAGAAAAGCCCTATAGCT < 41bp 0.528559299566221 0.778682127303703 0.34446186 0.84402204 prediction 0.500245655474963 Functional Gain - ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50549145 chr19:50549146 synonymous SNV . 0 22 hm5C_associated_SNPs_108385 0 0 1 0 0 Cytosol 0.500231638821252 0.500231058515665 0.68804408 0 hm5C_site_61530 DeepMRMD:0.68804408;iRNA_m5C:0 61531 chr4 38016254 38016254 1 + T C UCEC 38016252 + 38016232 38016272 41 GAGGTGCTCTTCTGCGGCCGCGTGACGGTGGCGCACAAGAA GAGGTGCTCTTCTGCGGCCGCGCGACGGTGGCGCACAAGAA < 41bp 0.530991324069809 0.781109954850582 0.4594226 0.47376642 prediction 0.500237261561546 Functional Gain - TBC1D1 ENSG00000065882 CDS Human protein_coding chr4:38016252 chr4:38016254 nonsynonymous SNV 0.740 2 23 hm5C_associated_SNPs_108386 0 0 1 0 0 Nucleus 0.500231642075133 0.500231641246505 0 0 hm5C_site_61531 DeepMRMD:0;iRNA_m5C:0 61532 chr16 2569311 2569311 1 + C T SKCM 2569310 + 2569290 2569330 41 CAGATCATGAAGTCCATCATCCCAGTGGTCATGGCTGGCAT CAGATCATGAAGTCCATCATCTCAGTGGTCATGGCTGGCAT < 41bp 0.516597055589884 0.766709910145407 0.34579018 0.2650957 prediction 0.500225709111046 Functional Gain - ATP6V0C ENSG00000185883;ENSG00000260272 CDS Human other chr16:2569310 chr16:2569311 nonsynonymous SNV 0.999 4 22 hm5C_associated_SNPs_108387 0 0 1 0 2 Endoplasmic reticulum 0.50032896723981 0.503592339777543 0 0.00652674507546602 hm5C_site_61532 DeepMRMD:0;iRNA_m5C:0.00652674507546602 61533 chr20 31671246 31671246 1 + T G COAD 31671244 + 31671224 31671264 41 TATATACCAACGGCAAAAAACTTGATGGTATTTACCAGTAT TATATACCAACGGCAAAAAACTGGATGGTATTTACCAGTAT < 41bp 0.625726404443273 0.875838093188767 0.1615645 0.53368556 prediction 0.500223377490989 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31671244 chr20:31671246 synonymous SNV . 0 23 hm5C_associated_SNPs_108388 0 0 0 0 1 exosome 0.500231644041546 0.500231643922481 0.06737112 0 hm5C_site_61533 DeepMRMD:0.06737112;iRNA_m5C:0 61534 chrX 150869197 150869197 1 + C T SKCM 150869196 + 150869176 150869216 41 AGTCGCGCCGGGCACACCCTCCCCCGGGTCATGGTGTACCG AGTCGCGCCGGGCACACCCTCTCCCGGGTCATGGTGTACCG < 41bp 0.50949348645479 0.759604788662567 0.12961057 0.38886747 prediction 0.500222604415554 Functional Gain - PRRG3 ENSG00000130032 CDS Human protein_coding chrX:150869196 chrX:150869197 nonsynonymous SNV 0.996 5 22 hm5C_associated_SNPs_108389 0 0 0 0 0 exosome 0.500231561463246 0.500231646939598 0 1.70952703326677e-07 hm5C_site_61534 DeepMRMD:0;iRNA_m5C:1.70952703326677e-07 61535 chr8 38827105 38827105 1 + C T SKCM 38827104 + 38827084 38827124 41 GGCAGCCCTGGACACCTGTCCCCCAGGCTGGGGAGAAGCTG GGCAGCCCTGGACACCTGTCCTCCAGGCTGGGGAGAAGCTG < 41bp 0.556854004455481 0.806965217685636 0.049355716 0.9144905 prediction 0.500222426460311 Functional Gain - PLEKHA2 ENSG00000169499 CDS Human protein_coding chr8:38827104 chr8:38827105 nonsynonymous SNV 0.977 2 22 hm5C_associated_SNPs_108390 0 0 0 0 0 Ribosome 0.500231647014249 0.500231643925296 0.828981 0 hm5C_site_61535 DeepMRMD:0.828981;iRNA_m5C:0 61536 chr9 129265612 129265612 1 + C A rs3814128 129265608 + 129265588 129265628 41 TGACGGCAGGGGCTGCTGCCCCCGCCTCCTCCTGCCGCCTC TGACGGCAGGGGCTGCTGCCCCCGACTCCTCCTGCCGCCTC < 41bp 0.378938520561158 0.750106944197766 0.18978393 0.099101335 prediction 0.500213888395532 Functional Gain - MVB12B ENSG00000196814 UTR3 Human protein_coding chr9:129265608 chr9:129265612 . . 0 25 hm5C_associated_SNPs_108391 0 0 0 0 0 Cytosol 0.500231643921094 0.500231643919464 0 0 hm5C_site_61536 DeepMRMD:0;iRNA_m5C:0 61537 chr9 1056458 1056458 1 + C G rs372851397 1056454 + 1056434 1056474 41 TACAAAAGTGCCTACAGCCCCAGCCCAGTGGAACCACCAAG TACAAAAGTGCCTACAGCCCCAGCGCAGTGGAACCACCAAG < 41bp 0.462204728267469 0.750095590768452 0.055579334 0.08438352 prediction 0.500191181536905 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1056454 chr9:1056458 nonsynonymous SNV 0.013 0 25 hm5C_associated_SNPs_108392 0 0 0 0 0 Cytosol 0.50023164392144 0.500231643904102 0 0 hm5C_site_61537 DeepMRMD:0;iRNA_m5C:0 61538 chr10 102894117 102894117 1 + C A UCEC 102894116 + 102894096 102894136 41 GTCAAAACCTGGTTCCAGAACCGGCGGACAAAGTGGAGGTG GTCAAAACCTGGTTCCAGAACAGGCGGACAAAGTGGAGGTG < 41bp 0.51947337628271 0.769565856282684 0.89923847 0.88257515 prediction 0.500184959999948 Functional Gain - TLX1 ENSG00000107807 CDS Human protein_coding chr10:102894116 chr10:102894117 synonymous SNV . 0 22 hm5C_associated_SNPs_108393 0 0 0 0 1 exosome 0.500231643921092 0.500231643921092 0 0 hm5C_site_61538 DeepMRMD:0;iRNA_m5C:0 61539 chr2 120194680 120194680 1 + C G rs72833259 120194679 + 120194659 120194699 41 CTTCAGAGACCTGGGCCAGGCCCATGTGCCCGGGCTGGCCG CTTCAGAGACCTGGGCCAGGCGCATGTGCCCGGGCTGGCCG < 41bp 0.43573342654107 0.750083295167062 0.14263734 0.29469416 prediction 0.500166590334123 Functional Gain - TMEM37 ENSG00000171227 CDS Human protein_coding chr2:120194679 chr2:120194680 synonymous SNV . 0 22 hm5C_associated_SNPs_108394 0 0 1 0 0 Endoplasmic reticulum 0.500231643921093 0.500231643921002 0 0 hm5C_site_61539 DeepMRMD:0;iRNA_m5C:0 61540 chr3 138170899 138170899 1 + C T SKCM 138170898 + 138170878 138170918 41 CTTCTTTCCTAGATCCACTTCCCGGACGTGGAGCGGGTCGA CTTCTTTCCTAGATCCACTTCTCGGACGTGGAGCGGGTCGA < 41bp 0.498105390975117 0.750080612636634 0.1523537 0.101388305 prediction 0.500161225273267 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138170898 chr3:138170899 nonsynonymous SNV 0.972 3 22 hm5C_associated_SNPs_108395 0 0 0 0 2 nucleoplasm 0.500231634249249 0.500231643915523 0 1.9332547784856e-08 hm5C_site_61540 DeepMRMD:0;iRNA_m5C:1.9332547784856e-08 61541 chr11 5757862 5757862 1 + C A ESCA 5757858 + 5757838 5757878 41 GCTGGCAACACTGGCTATCTCTGCCCCTGGCACTACTGTAT GCTGGCAACACTGGCTATCTCTGCACCTGGCACTACTGTAT < 41bp 0.669966695746094 0.920037341983941 0.3367132 0.30028385 prediction 0.500141292475694 Functional Gain - OR56B1 ENSG00000181023 CDS Human protein_coding chr11:5757858 chr11:5757862 nonsynonymous SNV 0.010 3 25 hm5C_associated_SNPs_108396 0 0 0 0 0 exosome 0.500231643632063 0.500231498147935 0 0 hm5C_site_61541 DeepMRMD:0;iRNA_m5C:0 61542 chr15 24921761 24921761 1 + C A COAD 24921760 + 24921740 24921780 41 ACACAGCCAGGCCGGATGTGCCCGGCATCTTGGAAAGCCTG ACACAGCCAGGCCGGATGTGCACGGCATCTTGGAAAGCCTG < 41bp 0.509292975171521 0.759355282444588 0.49013066 0.5059961 prediction 0.500124614546134 Functional Gain - NPAP1 ENSG00000185823 CDS Human protein_coding chr15:24921760 chr15:24921761 synonymous SNV . 0 22 hm5C_associated_SNPs_108397 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921093 0.0119921999999999 2.22044604925031e-16 hm5C_site_61542 DeepMRMD:0.0119921999999999;iRNA_m5C:2.22044604925031e-16 61543 chr14 20296334 20296334 1 + C A BLCA 20296330 + 20296310 20296350 41 AAGGCCATGTCCACGTGCATCACCCATATCATTGTTATATT AAGGCCATGTCCACGTGCATCACCAATATCATTGTTATATT < 41bp 0.344560468756487 0.75006033028742 0.05267611 0.1564354 prediction 0.500120660574841 Functional Gain - OR4N2 ENSG00000176294 CDS Human protein_coding chr14:20296330 chr14:20296334 nonsynonymous SNV 0.772 3 25 hm5C_associated_SNPs_108398 0 0 0 0 0 unknown 0.500231648172018 0.500231643921093 0 0 hm5C_site_61543 DeepMRMD:0;iRNA_m5C:0 61544 chr2 234526955 234526955 1 + T C UCEC 234526953 + 234526933 234526973 41 CTCTTAGGGTTCTCAGATGCCATGACTTTCAAGGAGAGAGT CTCTTAGGGTTCTCAGATGCCACGACTTTCAAGGAGAGAGT < 41bp 0.52243643779572 0.772494459509372 0.14483914 0.097730756 prediction 0.500116043427304 Functional Gain - UGT1A8 ENSG00000241635 CDS Human protein_coding chr2:234526953 chr2:234526955 nonsynonymous SNV 0.643 1 23 hm5C_associated_SNPs_108399 0 0 0 0 0 exosome 0.500231643921057 0.500231643934214 0 2.63149502188753e-11 hm5C_site_61544 DeepMRMD:0;iRNA_m5C:2.63149502188753e-11 61545 chr1 11561200 11561200 1 + C G rs3738159 11561199 + 11561179 11561219 41 TGTTGCTGGCGGCACTGGCCCCTGGCTTCCCGACCCCCAGC TGTTGCTGGCGGCACTGGCCCGTGGCTTCCCGACCCCCAGC < 41bp 0.433591897895808 0.750057700598443 0.3219683 0.8673614 prediction 0.500115401196886 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11561199 chr1:11561200 nonsynonymous SNV 0.070 1 22 hm5C_associated_SNPs_108400 0 0 0 0 0 exosome 0.500231643921092 0.500231643921092 0.7347228 0 hm5C_site_61545 DeepMRMD:0.7347228;iRNA_m5C:0 61546 chr9 136419613 136419613 1 + C A rs370480318 136419612 + 136419592 136419632 41 GAGCCAGGGCCTGGACGGGGCCGGGCTGATGGGCTTCGTCC GAGCCAGGGCCTGGACGGGGCAGGGCTGATGGGCTTCGTCC < 41bp 0.521067144655288 0.771121769361546 0.67019033 0.7336133 prediction 0.500109249412514 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136419612 chr9:136419613 synonymous SNV . 0 22 hm5C_associated_SNPs_108401 0 0 0 0 0 exosome 0.500231638782434 0.500231643921087 0.12684594 1.02773056731564e-08 hm5C_site_61546 DeepMRMD:0.12684594;iRNA_m5C:1.02773056731564e-08 61547 chr11 70281285 70281285 1 + C G rs185470349 70281281 + 70281261 70281301 41 GGCAGTAGGGCCCCCAGCCCCCCCCCGGAGCTGCGCCCTGG GGCAGTAGGGCCCCCAGCCCCCCCGCGGAGCTGCGCCCTGG < 41bp 0.458603588072545 0.750054152830055 0.08123317 0.21540847 prediction 0.50010830566011 Functional Gain - CTTN ENSG00000085733 UTR3 Human protein_coding chr11:70281281 chr11:70281285 . . 0 25 hm5C_associated_SNPs_108402 0 0 1 0 0 Ribosome 0.500231643924083 0.500231643921138 0 0 hm5C_site_61547 DeepMRMD:0;iRNA_m5C:0 61548 chr1 1451459 1451459 1 + C G BLCA 1451458 + 1451438 1451478 41 GCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGTGAGTGGGG GCTGCAGTTGGAGCAACAGTCGAAGCTCAAAGTGAGTGGGG < 41bp 0.444409240904828 0.750052602551149 0.3297152 0.89400375 prediction 0.500105205102299 Functional Gain - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1451458 chr1:1451459 synonymous SNV . 0 22 hm5C_associated_SNPs_108403 0 0 0 0 2 Ribosome 0.500231662721137 0.500231701255569 0.7880075 7.70688655116203e-08 hm5C_site_61548 DeepMRMD:0.7880075;iRNA_m5C:7.70688655116203e-08 61549 chr21 33371107 33371107 1 + C T UCEC 33371106 + 33371086 33371126 41 TCACTACAGGATTCTGAACTCCCCGGTCAGCTTGGCTCGCA TCACTACAGGATTCTGAACTCTCCGGTCAGCTTGGCTCGCA < 41bp 0.518038689920917 0.768090201236498 0.29868138 0.5633543 prediction 0.500103022631163 Functional Gain - HUNK ENSG00000142149 CDS Human protein_coding chr21:33371106 chr21:33371107 synonymous SNV . 0 22 hm5C_associated_SNPs_108404 0 0 0 0 0 Nucleus 0.500231643921092 0.500231643921101 0.1267086 1.62092561595273e-14 hm5C_site_61549 DeepMRMD:0.1267086;iRNA_m5C:1.62092561595273e-14 61550 chr3 183353477 183353477 1 + C A rs570951177 183353473 + 183353453 183353493 41 GCGCTGGAGAGTGCGCTGCGCCGCCCGCCGCTGAGGGACCG GCGCTGGAGAGTGCGCTGCGCCGCACGCCGCTGAGGGACCG < 41bp 0.3860270724061 0.75004922727006 0.13440248 0.1697377 prediction 0.500098454540121 Functional Gain - KLHL24 ENSG00000114796 UTR5 Human protein_coding chr3:183353473 chr3:183353477 . . 0 25 hm5C_associated_SNPs_108405 0 0 1 0 0 Ribosome 0.500231644040203 0.500226722518008 0 0 hm5C_site_61550 DeepMRMD:0;iRNA_m5C:0 61551 chr2 9616161 9616161 1 + C G rs61732203 9616157 + 9616137 9616177 41 TGGGGAGCATCGCTGGCTGACAGGCTGGTCAGGTGAGAATG TGGGGAGCATCGCTGGCTGACAGGGTGGTCAGGTGAGAATG < 41bp 0.583621690650706 0.833667270179293 0.75250846 0.907238 prediction 0.500091159057175 Functional Gain - IAH1 ENSG00000134330 CDS Human protein_coding chr2:9616157 chr2:9616161 nonsynonymous SNV 0.976 2 25 hm5C_associated_SNPs_108406 0 0 1 0 2 Ribosome 0.500231643921092 0.500231661539786 0.30945908 3.52373874523693e-08 hm5C_site_61551 DeepMRMD:0.30945908;iRNA_m5C:3.52373874523693e-08 61552 chr16 30406475 30406475 1 + C G rs541614500 30406474 + 30406454 30406494 41 GGAGTGGCTGGCGCTGTCGGCCGGCCGGGGAGGTCGGCGCG GGAGTGGCTGGCGCTGTCGGCGGGCCGGGGAGGTCGGCGCG < 41bp 0.446964291214999 0.750045115728136 0.85447943 0.908401 prediction 0.500090231456273 Functional Gain - ZNF48 ENSG00000180035 CDS Human protein_coding chr16:30406474 chr16:30406475 synonymous SNV . 0 22 hm5C_associated_SNPs_108407 0 0 0 0 0 Ribosome 0.500231643976558 0.500231647169148 0.10784314 6.38517927420423e-09 hm5C_site_61552 DeepMRMD:0.10784314;iRNA_m5C:6.38517927420423e-09 61553 chr3 137484093 137484093 1 + C G LUSC 137484092 + 137484072 137484112 41 TCCAGAAGATGGGCGAAGTGCCCCACACCTTGGCTACCGGC TCCAGAAGATGGGCGAAGTGCGCCACACCTTGGCTACCGGC < 41bp 0.604825762386478 0.854869251244708 0.14074829 0.3006704 prediction 0.500086977716458 Functional Gain - SOX14 ENSG00000168875 CDS Human protein_coding chr3:137484092 chr3:137484093 nonsynonymous SNV 1.000 3 22 hm5C_associated_SNPs_108408 0 0 0 0 0 exosome 0.500231643921091 0.500231643921092 0 1.77635683940025e-15 hm5C_site_61553 DeepMRMD:0;iRNA_m5C:1.77635683940025e-15 61554 chr9 27524461 27524461 1 + C A SKCM 27524457 + 27524437 27524477 41 GTTCACCTGAGAAGAGTCACCTGGCAAAATCTGAGACATCT GTTCACCTGAGAAGAGTCACCTGGAAAAATCTGAGACATCT < 41bp 0.6640187816056 0.914057716619487 0.34617117 0.27473804 prediction 0.500077870027774 Functional Gain - IFNK ENSG00000147896 CDS Human protein_coding chr9:27524457 chr9:27524461 nonsynonymous SNV 0.971 0 25 hm5C_associated_SNPs_108409 0 0 0 0 0 unknown 0.500231643927697 0.50023164403748 0 2.19566809178673e-10 hm5C_site_61554 DeepMRMD:0;iRNA_m5C:2.19566809178673e-10 61555 chr11 45826700 45826700 1 + C A rs150274138 45826696 + 45826676 45826716 41 GGGCCCGCCTCCCGGGGAGTCGGCCTCGGATGTCCGGAGGC GGGCCCGCCTCCCGGGGAGTCGGCATCGGATGTCCGGAGGC < 41bp 0.653706441662471 0.90373092699347 0.91919386 0.92570394 prediction 0.500048970661998 Functional Gain - SLC35C1 ENSG00000181830 UTR5 Human protein_coding chr11:45826696 chr11:45826700 . . 0 25 hm5C_associated_SNPs_108410 0 0 1 0 0 Endoplasmic reticulum 0.500231643964935 0.50023172135322 0.0130201599999999 1.54776570671089e-07 hm5C_site_61555 DeepMRMD:0.0130201599999999;iRNA_m5C:1.54776570671089e-07 61556 chr1 248309323 248309323 1 + C G rs142148433 248309319 + 248309299 248309339 41 ATGCTGAATCCCCTCATCTACAGCCTCCGCAACAAGGAGGT ATGCTGAATCCCCTCATCTACAGCGTCCGCAACAAGGAGGT < 41bp 0.547952687672106 0.797973934578134 0.11073148 0.18053973 prediction 0.500042493812057 Functional Gain - OR2M5 ENSG00000162727 CDS Human protein_coding chr1:248309319 chr1:248309323 nonsynonymous SNV 0.011 0 25 hm5C_associated_SNPs_108411 0 0 0 0 0 unknown 0.500231643921378 0.500231644239838 0 6.36920294283527e-10 hm5C_site_61556 DeepMRMD:0;iRNA_m5C:6.36920294283527e-10 61557 chr9 100615614 100615614 1 + C G rs376060243 100615613 + 100615593 100615633 41 TCGCCCCGCCTGGGCCCGCGCCCCGACCTCGCTGCCCCCGC TCGCCCCGCCTGGGCCCGCGCGCCGACCTCGCTGCCCCCGC < 41bp 0.580562489519588 0.830580836397435 0.2141965 0.64647686 prediction 0.500036693755693 Functional Gain - FOXE1 ENSG00000178919 UTR5 Human protein_coding chr9:100615613 chr9:100615614 . . 0 22 hm5C_associated_SNPs_108412 0 0 0 0 0 exosome 0.500231643917358 0.500231651830371 0.29295372 1.58260260452181e-08 hm5C_site_61557 DeepMRMD:0.29295372;iRNA_m5C:1.58260260452181e-08 61558 chr5 131607046 131607046 1 + T C BLCA 131607044 + 131607024 131607064 41 AGCCGGGACTGCAGAGTCGACCTGGGCTCCGAGGTGTACAG AGCCGGGACTGCAGAGTCGACCCGGGCTCCGAGGTGTACAG < 41bp 0.496025306712235 0.750018014391713 0.60910416 0.87706685 prediction 0.500036028783426 Functional Gain - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607044 chr5:131607046 nonsynonymous SNV 0.998 0 23 hm5C_associated_SNPs_108413 0 0 0 0 1 chromatin 0.50023165011483 0.500231671717453 0.53592538 4.32052456034171e-08 hm5C_site_61558 DeepMRMD:0.53592538;iRNA_m5C:4.32052456034171e-08 61559 chr5 178369801 178369801 1 + C A HNSC 178369797 + 178369777 178369817 41 CATCGGAGAAGAAAGAATGGCTGTCAGCCACCTGCCAACCA CATCGGAGAAGAAAGAATGGCTGTAAGCCACCTGCCAACCA < 41bp 0.328821075966122 0.750013004023866 0.09580809 0.1387018 prediction 0.500026008047732 Functional Gain - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178369797 chr5:178369801 synonymous SNV . 0 25 hm5C_associated_SNPs_108414 0 0 0 0 1 exosome 0.500237698211017 0.50023164392108 0 0 hm5C_site_61559 DeepMRMD:0;iRNA_m5C:0 61560 chr12 2797893 2797893 1 + C A PAAD 2797889 + 2797869 2797909 41 TCTCCCTCATGGTGCCCAGCCAGGCTGGGGCCCCAGGGAGG TCTCCCTCATGGTGCCCAGCCAGGATGGGGCCCCAGGGAGG < 41bp 0.477599783173488 0.75001094662528 0.6593307 0.7769089 prediction 0.500021893250561 Functional Gain - CACNA1C ENSG00000151067 CDS Human protein_coding chr12:2797889 chr12:2797893 nonsynonymous SNV 0.473 0 25 hm5C_associated_SNPs_108415 0 0 0 0 1 Cytosol 0.500231643921095 0.500231643921092 0.2351564 0 hm5C_site_61560 DeepMRMD:0.2351564;iRNA_m5C:0 61561 chr14 67770269 67770269 1 + C T UCEC 67770268 + 67770248 67770288 41 CATGGTACTTTGACTTTTGTCCTGATTCCCAGTCAACAGAT CATGGTACTTTGACTTTTGTCTTGATTCCCAGTCAACAGAT < 41bp 0.497911937338845 0.750003924725656 0.10948253 0.21056837 prediction 0.500007849451312 Functional Gain - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67770268 chr14:67770269 synonymous SNV . 0 22 hm5C_associated_SNPs_108416 0 0 1 0 2 Ribosome 0.50023187420324 0.500233678491235 0 3.60857599024378e-06 hm5C_site_61561 DeepMRMD:0;iRNA_m5C:3.60857599024378e-06 61562 chr8 145235425 145235425 1 + C A rs199893550 145235424 + 145235404 145235444 41 GGTGCGCGTGGCCTTCTGCTCCGGTAAGAGGCGGCCTCGTC GGTGCGCGTGGCCTTCTGCTCAGGTAAGAGGCGGCCTCGTC < 41bp 0.496222299977535 0.750002971370601 0.6350361 0.85080826 prediction 0.500005942741202 Functional Gain - MROH1 ENSG00000179832 CDS Human protein_coding chr8:145235424 chr8:145235425 synonymous SNV . 0 22 hm5C_associated_SNPs_108417 0 0 1 0 1 chromatin 0.500231643921097 0.500231644401676 0.43154432 9.61158708179255e-10 hm5C_site_61562 DeepMRMD:0.43154432;iRNA_m5C:9.61158708179255e-10 61563 chr17 8215627 8215627 1 + C T LUSC 8215626 + 8215606 8215646 41 CAGCCTCGACTCCCAGACTTCCCCAGACTCACCTTCCAGCA CAGCCTCGACTCCCAGACTTCTCCAGACTCACCTTCCAGCA < 41bp 0.558573878395692 0.808574206100184 0.058936357 0.9329608 prediction 0.500000655408983 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8215626 chr17:8215627 synonymous SNV . 0 22 hm5C_associated_SNPs_108418 0 0 0 0 0 exosome 0.500231643921083 0.500231643921092 0.8659216 1.84297022087776e-14 hm5C_site_61563 DeepMRMD:0.8659216;iRNA_m5C:1.84297022087776e-14